# hmmscan :: search sequence(s) against a profile database
# HMMER 3.0 (March 2010); http://hmmer.org/
# Copyright (C) 2010 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file:             peptides/protein_motifs.faa
# target HMM database:             /home/analysis/reflibs/hmmer3/tigrfams/12.0/tigrfams.hmm
# output directed to file:         tigr/tigrfam.hits
# per-seq hits tabular output:     tigr/tigrfam.hits.tbl
# prefer accessions over names:    yes
# max ASCII text line length:      unlimited
# number of worker threads:        4
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query:       MMETSP1137-20121227|1_1  [L=377]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (377 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        39  (0.00950756); expected 82.0 (0.02)
Passed bias filter:                       34  (0.00828864); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.54u 0.59s 00:00:01.12 Elapsed: 00:00:31.51
# Mc/sec: 15.79
//
Query:       MMETSP1137-20121227|3_1  [L=215]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (215 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        69  (0.0168211); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.47u 0.60s 00:00:01.06 Elapsed: 00:00:16.26
# Mc/sec: 17.45
//
Query:       MMETSP1137-20121227|4_1  [L=259]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (259 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        84  (0.0204778); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.57u 0.87s 00:00:01.44 Elapsed: 00:00:08.36
# Mc/sec: 40.84
//
Query:       MMETSP1137-20121227|6_1  [L=289]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (289 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       120  (0.029254); expected 82.0 (0.02)
Passed bias filter:                       97  (0.023647); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.51u 0.82s 00:00:01.33 Elapsed: 00:00:08.48
# Mc/sec: 44.98
//
Query:       MMETSP1137-20121227|7_1  [L=567]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (567 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        88  (0.0214529); expected 82.0 (0.02)
Passed bias filter:                       44  (0.0107265); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.80u 0.45s 00:00:01.25 Elapsed: 00:00:02.62
# Mc/sec: 285.64
//
Query:       MMETSP1137-20121227|8_1  [L=945]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (945 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        69  (0.0168211); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 1.17u 0.49s 00:00:01.66 Elapsed: 00:00:04.32
# Mc/sec: 288.73
//
Query:       MMETSP1137-20121227|9_1  [L=455]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (455 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        54  (0.0131643); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.73u 0.85s 00:00:01.58 Elapsed: 00:00:03.04
# Mc/sec: 197.55
//
Query:       MMETSP1137-20121227|10_1  [L=195]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.7e-29   98.1   0.0    8.2e-14   49.3   0.0    2.1  2  TIGR00149 TIGR00149_YbjQ: secondary thiamine-phosphate synthase enzyme


Domain annotation for each model (and alignments):
>> TIGR00149  TIGR00149_YbjQ: secondary thiamine-phosphate synthase enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.3   0.0     2e-17   8.2e-14       7      78 ..      38     108 ..      33     122 .. 0.92
   2 !   47.4   0.0   7.8e-17   3.2e-13      81     131 ..     143     193 ..     110     194 .. 0.89

  Alignments for each domain:
  == domain 1    score: 49.3 bits;  conditional E-value: 2e-17
  TIGR00149   7 takrkeliditseveavleesgvkdGlllvyvrHttaslvinEnadPdvkkDllrfleklvPedkeyerdel 78 
                 a++++l+dit  + ++++e g++dG l++ +rHtt++l+inE +  ++ +D+   l +l P  + y++++l
   MMETSP1137-20121227|10_1  38 PAQQVSLHDITPALRHFIAEVGIRDGTLNLVSRHTTTALTINEMET-RLVDDVRDWLLRLAPPSEPYKHNDL 108
                68999***************************************99.**********************954 PP

  == domain 2    score: 47.4 bits;  conditional E-value: 7.8e-17
  TIGR00149  81 nadaHlkssllgtsqvvpvenGrlalGtWqgiflaEfdgprtrrvivkvlG 131
                na +Hl + llg+s+++p+ +G l +G Wq++ l+E+dgpr+r+v ++v+G
   MMETSP1137-20121227|10_1 143 NAHSHLLAMLLGASETIPIADGELCIGQWQSVILVELDGPRERTVGAQVVG 193
                899******************************************999988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (195 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        68  (0.0165773); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.87s 00:00:01.40 Elapsed: 00:00:04.37
# Mc/sec: 58.90
//
Query:       MMETSP1137-20121227|11_1  [L=375]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.014   12.4   0.0       0.02   11.9   0.0    1.1  1  TIGR01628 PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family


Domain annotation for each model (and alignments):
>> TIGR01628  PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   4.8e-06      0.02     182     282 ..     147     264 ..     143     270 .. 0.83

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 4.8e-06
  TIGR01628 182 YvKnlddsvtedklrelFak.fGeitSaivkkdeknrkrgfafvnyekaedAkkAveelngkkit...................laatgkilyVgraqkraeReaelkakfeelkqerkek 282
                 vK l+ + t+ ++r+l +   Ge     v++ ++ +  g ++v y+   +A+ A+e+++g+ ++                   +a+ g+ l    +q+ ++R++  ++ +e+l+ e  ++
   MMETSP1137-20121227|11_1 147 LVKGLPRDATQREVRQLLQTaMGEWG-ELVRTWSAAQP-GSGYVRYKWRSSAQFALEAMHGRPLSpedatpcelswalhdpemeMAQAGSALALRSMQEAKRRREAQQRMYEQLELE-ARR 264
                58888999999988888754155544.44555556664.89******************************************87889***************99999*99999988.344 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (375 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       104  (0.0253535); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.70u 0.79s 00:00:01.49 Elapsed: 00:00:04.61
# Mc/sec: 107.37
//
Query:       MMETSP1137-20121227|12_1  [L=332]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00013   18.0   0.1       0.14    8.0   0.0    2.2  2  TIGR00870 trp: transient-receptor-potential calcium channel protein


Domain annotation for each model (and alignments):
>> TIGR00870  trp: transient-receptor-potential calcium channel protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.0   0.0   3.3e-05      0.14     132     162 ..     165     195 ..     129     206 .. 0.84
   2 !    7.8   0.0   3.9e-05      0.16     193     228 ..     217     252 ..     213     260 .. 0.90

  Alignments for each domain:
  == domain 1    score: 8.0 bits;  conditional E-value: 3.3e-05
  TIGR00870 132 italilAihkqnyeivklLlekgasvearak 162
                 t+++ A+h +++ ++klL   g +v+a   
   MMETSP1137-20121227|12_1 165 PTPIHRAVHSRSVDVLKLLASHGGDVNASVD 195
                59************************97654 PP

  == domain 2    score: 7.8 bits;  conditional E-value: 3.9e-05
  TIGR00870 193 ivsllsedpAdiltadslgntllhllviesefkaey 228
                 ++ l+e +Ad++  d+ gntl hl+v + +f+a y
   MMETSP1137-20121227|12_1 217 TIAALVELGADVKVLDENGNTLMHLAVNQVNFTALY 252
                578899**********************99999855 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (332 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       306  (0.0745978); expected 82.0 (0.02)
Passed bias filter:                      174  (0.0424183); expected 82.0 (0.02)
Passed Vit filter:                        24  (0.0058508); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.72u 0.91s 00:00:01.63 Elapsed: 00:00:06.34
# Mc/sec: 69.12
//
Query:       MMETSP1137-20121227|13_1  [L=562]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (562 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        61  (0.0148708); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.96u 0.81s 00:00:01.77 Elapsed: 00:00:01.96
# Mc/sec: 378.46
//
Query:       MMETSP1137-20121227|14_1  [L=459]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (459 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        58  (0.0141394); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.55u 0.59s 00:00:01.14 Elapsed: 00:00:01.69
# Mc/sec: 358.48
//
Query:       MMETSP1137-20121227|15_1  [L=171]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.037   12.0   0.0      0.063   11.3   0.0    1.4  1  TIGR01799 CM_T: chorismate mutase


Domain annotation for each model (and alignments):
>> TIGR01799  CM_T: chorismate mutase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   1.5e-05     0.063      29      58 ..      93     124 ..      89     139 .. 0.81

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 1.5e-05
  TIGR01799  29 vGkvkhraGlPiyaPerea..amlakrreeae 58 
                + + k+++G+Piy P+ ++  a la+ r+e  
   MMETSP1137-20121227|15_1  93 LANGKSKYGVPIYLPNGNInpAYLAAERNEMA 124
                56779**********99875578999888853 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (171 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       116  (0.0282789); expected 82.0 (0.02)
Passed bias filter:                      100  (0.0243784); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.27u 0.40s 00:00:00.67 Elapsed: 00:00:02.16
# Mc/sec: 104.49
//
Query:       MMETSP1137-20121227|16_1  [L=79]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (79 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        62  (0.0151146); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.38s 00:00:00.59 Elapsed: 00:00:01.02
# Mc/sec: 102.23
//
Query:       MMETSP1137-20121227|17_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        31  (0.00755729); expected 82.0 (0.02)
Passed bias filter:                       29  (0.00706972); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.28s 00:00:00.44 Elapsed: 00:00:00.51
# Mc/sec: 137.17
//
Query:       MMETSP1137-20121227|19_1  [L=285]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (285 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        29  (0.00706972); expected 82.0 (0.02)
Passed bias filter:                       28  (0.00682594); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.35s 00:00:00.59 Elapsed: 00:00:00.94
# Mc/sec: 400.18
//
Query:       MMETSP1137-20121227|20_1  [L=335]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.7e-08   31.3   1.3    3.5e-07   28.8   0.9    2.1  1  TIGR01571 A_thal_Cys_rich: uncharacterized Cys-rich domain


Domain annotation for each model (and alignments):
>> TIGR01571  A_thal_Cys_rich: uncharacterized Cys-rich domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.8   0.9   8.6e-11   3.5e-07       2      90 ..      41     193 ..      40     203 .. 0.86

  Alignments for each domain:
  == domain 1    score: 28.8 bits;  conditional E-value: 8.6e-11
  TIGR01571   2 eWetglldcleDislcllglfcpcvlfgkiaerlgtfaeecllaglllililallge..................................................................igllytgavRkklrkkyklqgaiceDflvhlf 90 
                 W++gl++c+ D ++ +  lfc  ++ ++ ++r+++  ++ +  +l+l+l+l llg+                                                                  ++ll+ + vR k+r + +++++ c  +   l+
   MMETSP1137-20121227|20_1  41 AWSSGLFSCTADWCSLFTVLFCAPITTAQLYTRFSSHRGKTV-LFLSLALFL-LLGQilpsfaptpiksnstneyadsdeevrsilvtddavyveyesyteafkyqmtplraffaawafiaslCTLLVVCQVRRKIRVRDQIPEEQCGGCEDXLL 193
                6**********************************4444433.344555544.444458889************************************************************99999*****************99985544444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (335 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       116  (0.0282789); expected 82.0 (0.02)
Passed bias filter:                       99  (0.0241346); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.43s 00:00:00.82 Elapsed: 00:00:02.16
# Mc/sec: 204.71
//
Query:       MMETSP1137-20121227|21_1  [L=101]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       100  (0.0243784); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.45s 00:00:00.70 Elapsed: 00:00:01.54
# Mc/sec: 86.56
//
Query:       MMETSP1137-20121227|22_1  [L=112]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (112 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        53  (0.0129205); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.36s 00:00:00.55 Elapsed: 00:00:00.56
# Mc/sec: 259.35
//
Query:       MMETSP1137-20121227|23_1  [L=173]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (173 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        64  (0.0156021); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.36s 00:00:00.59 Elapsed: 00:00:00.92
# Mc/sec: 248.20
//
Query:       MMETSP1137-20121227|24_1  [L=113]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (113 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        53  (0.0129205); expected 82.0 (0.02)
Passed bias filter:                       44  (0.0107265); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.32s 00:00:00.53 Elapsed: 00:00:00.87
# Mc/sec: 171.43
//
Query:       MMETSP1137-20121227|25_1  [L=151]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (151 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        90  (0.0219405); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.35s 00:00:00.55 Elapsed: 00:00:01.03
# Mc/sec: 193.50
//
Query:       MMETSP1137-20121227|26_1  [L=385]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (385 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        89  (0.0216967); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.46s 00:00:00.84 Elapsed: 00:00:01.13
# Mc/sec: 445.75
//
Query:       MMETSP1137-20121227|27_1  [L=93]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (93 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        77  (0.0187713); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.30s 00:00:00.50 Elapsed: 00:00:00.96
# Mc/sec: 127.86
//
Query:       MMETSP1137-20121227|28_1  [L=155]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.028   12.7   4.3      0.059   11.7   3.0    1.5  1  TIGR01841 phasin: phasin family protein
      0.033   11.7   0.8      0.042   11.4   0.6    1.2  1  TIGR00421 ubiX_pad: polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases


Domain annotation for each model (and alignments):
>> TIGR01841  phasin: phasin family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   3.0   2.9e-05     0.059      33      83 ..      36      87 ..      29      89 .. 0.92

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 2.9e-05
  TIGR01841 33 agdpqellalqtefakpaaeklleysrelyEiaaktqaealk...llrrriaeg 83
               a+d++e++a+   +a++a+e + e+++ ++E++a + aea+    l+++r +++
   MMETSP1137-20121227|28_1 36 AKDAAEAIAAA--VAEAATEAVAEAGTAATEVVAEVVAEAATeepLASQRYDQS 87
               89*******99..89999**********************99999999999886 PP

>> TIGR00421  ubiX_pad: polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.6   2.1e-05     0.042      34      95 ..      58     119 ..      36     137 .. 0.69

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 2.1e-05
  TIGR00421  34 skaakkiikeeldyeekeveelatktydeddlaaaiasGsfkfdamvvvPcsmktlsaianG 95 
                + +a++ + +e+  e  + e la++ yd++d++ ++ +G     a v +  +  ++++   G
   MMETSP1137-20121227|28_1  58 AGTAATEVVAEVVAEAATEEPLASQRYDQSDVTDCVGTGVAPVSAEVAASVAPAAAASASSG 119
                234555566888899999999******************99998877555444444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (155 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       337  (0.082155); expected 82.0 (0.02)
Passed bias filter:                      153  (0.0372989); expected 82.0 (0.02)
Passed Vit filter:                        22  (0.00536324); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.24u 0.38s 00:00:00.62 Elapsed: 00:00:01.02
# Mc/sec: 200.57
//
Query:       MMETSP1137-20121227|30_1  [L=529]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        6.6    2.9  12.5         11    2.3   8.7    1.2  1  TIGR01348 PDHac_trf_long: dihydrolipoyllysine-residue acetyltransferase


Domain annotation for each model (and alignments):
>> TIGR01348  PDHac_trf_long: dihydrolipoyllysine-residue acetyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   8.7    0.0026        11      68     157 ..     270     363 ..     265     379 .. 0.63

  Alignments for each domain:
  == domain 1    score: 2.3 bits;  conditional E-value: 0.0026
  TIGR01348  68 avilllevadgaad..daeekaeaasaaagaa...daakdveaeqalisveadkaaqevqdafketvkageagaaadaakkeaaPaeaqasgvke 157
                +v++  +  d+a++   +++k+ aa aa+ aa   daa++ e +  +++ ++   + ++ ++++ tv ++ ag  a+ a ++aaPa++ +++ ++
   MMETSP1137-20121227|30_1 270 GVVVDRGQRDAAEKtsMSQAKRAAALAAEHAAqhpDAANQTERHAPTDNINTTADTTSQTACQTTTVSTAGAGHNASVATAPAAPAATLTAT-EQ 363
                55555555444443222333333333333222111566668888778877777777788999999999999999999999999999986553.33 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (529 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       184  (0.0448562); expected 82.0 (0.02)
Passed bias filter:                       98  (0.0238908); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.60s 00:00:01.10 Elapsed: 00:00:00.84
# Mc/sec: 831.22
//
Query:       MMETSP1137-20121227|31_1  [L=43]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (43 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       110  (0.0268162); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.52s 00:00:00.73 Elapsed: 00:00:00.71
# Mc/sec: 79.94
//
Query:       MMETSP1137-20121227|32_1  [L=239]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (239 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        74  (0.01804); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.50s 00:00:00.81 Elapsed: 00:00:00.82
# Mc/sec: 384.70
//
Query:       MMETSP1137-20121227|33_1  [L=168]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.3e-42  139.6   0.0    8.2e-42  139.2   0.0    1.1  1  TIGR00365 TIGR00365: monothiol glutaredoxin, Grx4 family
    4.5e-13   47.1   0.0    7.9e-13   46.3   0.0    1.4  1  TIGR02181 GRX_bact: glutaredoxin 3
    1.6e-12   45.3   0.0      3e-12   44.5   0.0    1.5  1  TIGR02180 GRX_euk: glutaredoxin
    1.3e-06   26.1   0.0    1.9e-06   25.6   0.0    1.3  1  TIGR02189 GlrX-like_plant: glutaredoxin-like family
    1.7e-05   22.5   0.0    3.3e-05   21.6   0.0    1.5  1  TIGR02190 GlrX-dom: glutaredoxin-family domain
    2.2e-05   22.7   0.0      4e-05   21.9   0.0    1.5  1  TIGR02196 GlrX_YruB: glutaredoxin-like protein, YruB-family
  ------ inclusion threshold ------
      0.031   12.3   0.0      0.056   11.5   0.0    1.6  1  TIGR02183 GRXA: glutaredoxin, GrxA family


Domain annotation for each model (and alignments):
>> TIGR00365  TIGR00365: monothiol glutaredoxin, Grx4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  139.2   0.0   1.4e-44   8.2e-42       2      98 ..      66     162 ..      65     163 .. 0.98

  Alignments for each domain:
  == domain 1    score: 139.2 bits;  conditional E-value: 1.4e-44
  TIGR00365   2 kekikeqvkenkvvlymkGtpelpqCGfsakavqilkalgvefatvnvledeeireelkeysnWPtiPqlyvkgelvGGcdivlelyesgelkkllk 98 
                + +i ++++enkv ++mkG pe+p+CGfs+++vqil+a +vef+ +nvl+d+++re++k+ysnWPtiPq+yv+ge++GGcd  +e+y+sgel++llk
   MMETSP1137-20121227|33_1  66 HAQIAKDIAENKVTVFMKGVPEAPMCGFSNTVVQILRAENVEFKGFNVLADPDLREGIKSYSNWPTIPQVYVNGEFIGGCDTTMEMYKSGELSRLLK 162
                6799*****************************************************************************************9997 PP

>> TIGR02181  GRX_bact: glutaredoxin 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.3   0.0   1.3e-15   7.9e-13       7      80 .]      89     161 ..      85     161 .. 0.97

  Alignments for each domain:
  == domain 1    score: 46.3 bits;  conditional E-value: 1.3e-15
  TIGR02181   7 ksCpycsrAkalLeekgvefeeievdkdkeareemierskgrrtvPQifigdvhvGGcddLlaleregkLdkLL 80 
                ++C+++++  ++L++++vef+ ++v +d+++re + + s+   t+PQ++++ + +GGcd  +++ ++g+L++LL
   MMETSP1137-20121227|33_1  89 PMCGFSNTVVQILRAENVEFKGFNVLADPDLREGIKSYSN-WPTIPQVYVNGEFIGGCDTTMEMYKSGELSRLL 161
                68*************************************6.******************************998 PP

>> TIGR02180  GRX_euk: glutaredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.5   0.0   5.1e-15     3e-12       7      83 ..      89     160 ..      78     161 .. 0.83

  Alignments for each domain:
  == domain 1    score: 44.5 bits;  conditional E-value: 5.1e-15
  TIGR02180   7 syCpYckkakelLkklkvkkalevveldklengselqdyLkeltgqrtVPrifingkfiGGsddlkklekkgkleel 83 
                ++C +++ + ++L+ ++v+  ++  ++       +l++ +k++++  t+P++++ng+fiGG+d++++++k+g+l  l
   MMETSP1137-20121227|33_1  89 PMCGFSNTVVQILRAENVE--FKGFNVLA---DPDLREGIKSYSNWPTIPQVYVNGEFIGGCDTTMEMYKSGELSRL 160
                68************99888..55555544...489**************************************9876 PP

>> TIGR02189  GlrX-like_plant: glutaredoxin-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.6   0.0   3.2e-09   1.9e-06       5      96 ..      73     166 ..      69     168 .] 0.81

  Alignments for each domain:
  == domain 1    score: 25.6 bits;  conditional E-value: 3.2e-09
  TIGR02189   5 vsekavvifskss.....CClshvvkrLllelGvnPavveldkeaeakeiekallelgskeavPvvfvGGklvGgleevmalhlsgsLvpllkkaga 96 
                ++e+ v +f k       C +s +v ++l    v+   +++  +++ +e  k +++    +++P v+v G+++Gg ++ m ++ sg+L  llk+ag 
   MMETSP1137-20121227|33_1  73 IAENKVTVFMKGVpeapmCGFSNTVVQILRAENVEFKGFNVLADPDLREGIKSYSN---WPTIPQVYVNGEFIGGCDTTMEMYKSGELSRLLKDAGV 166
                67888888877422224488888888888888888888888888777777777776...99********************************9985 PP

>> TIGR02190  GlrX-dom: glutaredoxin-family domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.6   0.0   5.7e-08   3.3e-05       7      74 ..      75     148 ..      69     153 .. 0.76

  Alignments for each domain:
  == domain 1    score: 21.6 bits;  conditional E-value: 5.7e-08
  TIGR02190   7 kesvsvftk.....pGCPfCakakavLkekGldfe..eivLgkdirtrslravtGattvPqvfinGkliGgsdel 74 
                +++v+vf k     p C f     + L+++ ++f+  ++  + d+r   +++ +   t+Pqv++nG++iGg d  
   MMETSP1137-20121227|33_1  75 ENKVTVFMKgvpeaPMCGFSNTVVQILRAENVEFKgfNVLADPDLR-EGIKSYSNWPTIPQVYVNGEFIGGCDTT 148
                5778888876544456777788889999999999732455666666.57999*******************9974 PP

>> TIGR02196  GlrX_YruB: glutaredoxin-like protein, YruB-family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.9   0.0   6.8e-08     4e-05       8      64 ..      89     145 ..      77     150 .. 0.91

  Alignments for each domain:
  == domain 1    score: 21.9 bits;  conditional E-value: 6.8e-08
  TIGR02196   8 pwCppCkkakeyLkskgiafeeidvekdsaaaeellkklgqrsvPvivigekivvGF 64 
                p C+  + + + L++++++f+ ++v +d+  +e + + ++   +P++ ++++ + G 
   MMETSP1137-20121227|33_1  89 PMCGFSNTVVQILRAENVEFKGFNVLADPDLREGIKSYSNWPTIPQVYVNGEFIGGC 145
                789999********************************************9988775 PP

>> TIGR02183  GRXA: glutaredoxin, GrxA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   9.6e-05     0.056      56      74 ..     130     148 ..      78     158 .. 0.73

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 9.6e-05
  TIGR02183  56 etvpqifvdekavGGctdf 74 
                 t+pq++v+ + +GGc   
   MMETSP1137-20121227|33_1 130 PTIPQVYVNGEFIGGCDTT 148
                59**************543 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (168 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       114  (0.0277913); expected 82.0 (0.02)
Passed bias filter:                      111  (0.02706); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.29u 0.45s 00:00:00.74 Elapsed: 00:00:00.89
# Mc/sec: 249.15
//
Query:       MMETSP1137-20121227|34_1  [L=112]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.011   13.3   0.0      0.045   11.4   0.0    1.8  1  TIGR02742 TrbC_Ftype: type-F conjugative transfer system pilin assembly protein TrbC


Domain annotation for each model (and alignments):
>> TIGR02742  TrbC_Ftype: type-F conjugative transfer system pilin assembly protein TrbC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   1.1e-05     0.045       4      82 ..      13      86 ..      11     103 .. 0.77

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 1.1e-05
  TIGR02742  4 FvSlsmp.eellkqllkqaeklgvplvlrGllensfketvtaiqsllkkekksgvqidPelFkqfditaVPalvvvkdea 82
               F  ls+p  +ll ++l++++++  p vlr +  + f     ++++l   ++     +  ++ k++ i++ Pa+v+++ + 
   MMETSP1137-20121227|34_1 13 FQRLSIPgAKLLLAVLNKSRAAATPPVLRAVSVDFFDDGL-QVAELRPYNA-----LYGKFIKEYSIQHLPAVVMIHGGD 86
               6678888346788999999999999999999887776655.5677777766.....6778889************99875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (112 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        75  (0.0182838); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.21u 0.32s 00:00:00.53 Elapsed: 00:00:00.73
# Mc/sec: 202.50
//
Query:       MMETSP1137-20121227|35_1  [L=1044]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00011   17.9   3.2    0.00016   17.4   2.2    1.1  1  TIGR02168 SMC_prok_B: chromosome segregation protein SMC
    0.00061   15.4   3.1    0.00084   14.9   2.1    1.1  1  TIGR02169 SMC_prok_A: chromosome segregation protein SMC
     0.0092   12.4   1.7      0.013   11.8   1.2    1.1  1  TIGR03545 TIGR03545: TIGR03545 family protein
  ------ inclusion threshold ------
       0.13    9.0   6.9       0.22    8.2   1.7    2.0  2  TIGR01843 type_I_hlyD: type I secretion membrane fusion protein, HlyD family


Domain annotation for each model (and alignments):
>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   2.2   1.5e-07   0.00016     367     496 ..     158     288 ..     128     318 .. 0.65

  Alignments for each domain:
  == domain 1    score: 17.4 bits;  conditional E-value: 1.5e-07
  TIGR02168 367 leelesrleeleeeleelrsevaeleeqlaslnaelerleaeleqleerrerlkqeieelekkleeae..aelkelqeeleeleeeleeleeelerleealeeleeeleeaeqalqkaeeelaqlqarlesl 496
                 ++le ++++lee ++el++++a+l+++++++++++e++e+++ ++ee+ ++ ++  e+++ +l +++   + ++l++e++ l+ee++ l   ++ +  +++ +e+el   +q+l+ ++++l q+q+ l+  
   MMETSP1137-20121227|35_1 158 SAMLEGEVAALEELVTELSQDIANLNKEKQKIEKDIENVERQIRDVEEEMKKCSSALEAASGALLNTTdpDQSHTLRGEINFLREEKKRLPXXDRXAPGEEQFAEKELV-PQQRLDLLSRRLYQAQSDLAGA 288
                5567777778888888888888888888888888888888888888888888888777777776654312466677777777777777766655544444444444333.3444444444444444444433 PP

>> TIGR02169  SMC_prok_A: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   2.1   8.2e-07   0.00084     860     922 ..     161     223 ..     147     305 .. 0.68

  Alignments for each domain:
  == domain 1    score: 14.9 bits;  conditional E-value: 8.2e-07
  TIGR02169 860 lkakleeleeeleeleaavreLeeelkdLkkereeleaelrelekkkeeleaeiekkrkrlke 922
                l++++++lee + el + +++L++e+++++k++e++e ++r +e++ ++ ++++e +   l +
   MMETSP1137-20121227|35_1 161 LEGEVAALEELVTELSQDIANLNKEKQKIEKDIENVERQIRDVEEEMKKCSSALEAASGALLN 223
                556666677777777777777777777777777777777777777777766666665544433 PP

>> TIGR03545  TIGR03545: TIGR03545 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.8   1.2   1.3e-05     0.013     214     264 ..     161     211 ..     153     226 .. 0.87

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 1.3e-05
  TIGR03545 214 lqkaleeldkvkkeikadkqkiksakndlqkdlkqlkaqlaelkkapqkDl 264
                l+  +++l++++ e+ +d + ++++k++++kd++++++q++++++  +k  
   MMETSP1137-20121227|35_1 161 LEGEVAALEELVTELSQDIANLNKEKQKIEKDIENVERQIRDVEEEMKKCS 211
                6678999*************************************9998755 PP

>> TIGR01843  type_I_hlyD: type I secretion membrane fusion protein, HlyD family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   1.7   0.00022      0.22     125     182 ..     159     216 ..     141     224 .. 0.65
   2 ?    2.3   0.1     0.014        14     167     224 ..     241     298 ..     228     312 .. 0.82

  Alignments for each domain:
  == domain 1    score: 8.2 bits;  conditional E-value: 0.00022
  TIGR01843 125 elvkeqeslfesrksalraqlesleaqikqleaeleglqaqlqalrqqleliseelea 182
                ++++++++ +e+  ++l++ +++l+++ ++ e+ +e++++q++ ++++++  s+ lea
   MMETSP1137-20121227|35_1 159 AMLEGEVAALEELVTELSQDIANLNKEKQKIEKDIENVERQIRDVEEEMKKCSSALEA 216
                4556666666666666666666666666666666666666666666666666665554 PP

  == domain 2    score: 2.3 bits;  conditional E-value: 0.014
  TIGR01843 167 qalrqqleliseelealrkLkekglvsrlelLelereraelqgelaeleaeleklkae 224
                ++ +++l   ++ +   ++ +ek+lv++++l  l r + ++q++la ++ ++    +e
   MMETSP1137-20121227|35_1 241 REEKKRLPXXDRXAPGEEQFAEKELVPQQRLDLLSRRLYQAQSDLAGAKRRIPWSFEE 298
                66678888889999999****************************9999887655555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1044 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       252  (0.0614334); expected 82.0 (0.02)
Passed bias filter:                      195  (0.0475378); expected 82.0 (0.02)
Passed Vit filter:                        36  (0.00877621); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 1.06u 0.60s 00:00:01.66 Elapsed: 00:00:01.55
# Mc/sec: 889.01
//
Query:       MMETSP1137-20121227|37_1  [L=120]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.9e-09   34.9   0.0    3.6e-09   34.6   0.0    1.1  1  TIGR01068 thioredoxin: thioredoxin
     0.0015   16.7   0.0     0.0018   16.4   0.0    1.1  1  TIGR01126 pdi_dom: protein disulfide-isomerase domain
     0.0033   14.8   0.0     0.0037   14.7   0.0    1.0  1  TIGR01130 ER_PDI_fam: protein disulfide isomerases


Domain annotation for each model (and alignments):
>> TIGR01068  thioredoxin: thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.6   0.0   2.6e-12   3.6e-09       4      92 ..      18     109 ..      15     117 .. 0.80

  Alignments for each domain:
  == domain 1    score: 34.6 bits;  conditional E-value: 2.6e-12
  TIGR01068   4 enfeetvassd.klvlvDfwAeWCgpCkmlaPvleelakele..ekvkvvKlnvdeeqeiaakygirsiPtlllfkngkevkrvvGakpkaa 92 
                e++e+ v ++   l ++D + +  gpCkml   + +   e++  + +++++ + ++ +e++++++ +++P  l++ +g++++ v G +  a 
   MMETSP1137-20121227|37_1  18 ESWESXVLQNMgVLLIIDVYSTCWGPCKMLDNHFSNTFYEMAedHALTFCRADCEKVPELSKEFQGNAMPNFLFYLDGNRKELVTGPNMPAI 109
                56666666654156789*****99******999998776665115699**********************************9999776544 PP

>> TIGR01126  pdi_dom: protein disulfide-isomerase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0   1.3e-06    0.0018       8      84 ..      22      98 ..      16     114 .. 0.83

  Alignments for each domain:
  == domain 1    score: 16.4 bits;  conditional E-value: 1.3e-06
  TIGR01126  8 elvldenk.dvlvefyaPWCGhCkklaPeyeklakelkkeeekvkiakvdataekelaskfkvsgfPtlkffkkgkke 84
               + vl++    ++++ y+   G Ck l  ++ +   e+++++  ++  + d+++  el+++f+ ++ P   f+ +g+++
   MMETSP1137-20121227|37_1 22 SXVLQNMGvLLIIDVYSTCWGPCKMLDNHFSNTFYEMAEDH-ALTFCRADCEKVPELSKEFQGNAMPNFLFYLDGNRK 98
               55554433045678999988*****************9876.7*************************9999988864 PP

>> TIGR01130  ER_PDI_fam: protein disulfide isomerases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0   2.7e-06    0.0037      21      94 ..      32     104 ..      12     118 .. 0.83

  Alignments for each domain:
  == domain 1    score: 14.7 bits;  conditional E-value: 2.7e-06
  TIGR01130  21 vLveFYAPWCGHCksLaPeYekAAeelkkkspkvklakvDateekelaqkygvsGyPtLkifrngesssdYnGp 94 
                +++  Y    G Ck L   ++++  e+++++ +++  + D+ +  el+++++ +  P   ++ +g++++  +Gp
   MMETSP1137-20121227|37_1  32 LIIDVYSTCWGPCKMLDNHFSNTFYEMAEDH-ALTFCRADCEKVPELSKEFQGNAMPNFLFYLDGNRKELVTGP 104
                3467788777******************999.9********************************988878887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (120 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        70  (0.0170648); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.22u 0.35s 00:00:00.56 Elapsed: 00:00:00.56
# Mc/sec: 277.87
//
Query:       MMETSP1137-20121227|38_1  [L=496]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.7e-11   41.6   0.0    2.7e-06   24.5   0.0    3.0  3  TIGR03364 HpnW_proposed: FAD dependent oxidoreductase TIGR03364
    4.5e-10   37.0   0.0      8e-10   36.1   0.0    1.4  1  TIGR02352 thiamin_ThiO: glycine oxidase ThiO
    0.00013   19.6   0.1    0.00021   18.9   0.0    1.3  1  TIGR02032 GG-red-SF: geranylgeranyl reductase family
    0.00055   17.0   0.2     0.0016   15.5   0.0    1.7  2  TIGR01790 carotene-cycl: lycopene cyclase family protein
     0.0015   15.0   0.0     0.0021   14.5   0.0    1.1  1  TIGR00562 proto_IX_ox: protoporphyrinogen oxidase
     0.0023   14.9   0.0      0.003   14.5   0.0    1.2  1  TIGR03197 MnmC_Cterm: tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain
     0.0047   13.6   0.0      0.014   12.0   0.0    1.7  2  TIGR01373 soxB: sarcosine oxidase, beta subunit family
  ------ inclusion threshold ------
      0.013   12.5   0.0      0.019   11.9   0.0    1.2  1  TIGR01789 lycopene_cycl: lycopene cyclase
      0.021   11.2   0.1       0.03   10.7   0.0    1.1  1  TIGR03140 AhpF: alkyl hydroperoxide reductase, F subunit
       0.03   11.2   0.0      0.054   10.3   0.0    1.4  1  TIGR02023 BchP-ChlP: geranylgeranyl reductase
       0.04   10.4   0.0      0.058    9.9   0.0    1.2  1  TIGR01320 mal_quin_oxido: malate dehydrogenase (acceptor)
      0.045   10.3   0.0      0.061    9.9   0.0    1.1  1  TIGR03385 CoA_CoA_reduc: CoA-disulfide reductase
      0.049   10.2   0.1      0.079    9.5   0.1    1.5  1  TIGR01377 soxA_mon: sarcosine oxidase, monomeric form


Domain annotation for each model (and alignments):
>> TIGR03364  HpnW_proposed: FAD dependent oxidoreductase TIGR03364
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.5   0.0   8.5e-09   2.7e-06       1      39 [.      64     104 ..      64     106 .. 0.89
   2 !   11.3   0.0   8.7e-05     0.027      74     131 ..     147     204 ..     141     227 .. 0.79
   3 ?    1.9   0.0     0.065        20     315     347 ..     439     471 ..     415     488 .. 0.75

  Alignments for each domain:
  == domain 1    score: 24.5 bits;  conditional E-value: 8.5e-09
  TIGR03364   1 tdvvvvGaGivGlahAlaa..arrGlkVtvierssraaGAs 39 
                +dv++vG+G++G ++A++    r G++V+v+er+++   As
   MMETSP1137-20121227|38_1  64 YDVLIVGGGVMGASIAYHTklLRPGMRVCVVERDPQYIHAS 104
                79***************9622699***********988887 PP

  == domain 2    score: 11.3 bits;  conditional E-value: 8.7e-05
  TIGR03364  74 aglsvrenGslvlarteeelavleefaavreeae.ysvelLspaevaaklpalrldgll 131
                 ++++re+G l+la+++ e +vl+e +++++    + + lL+++e+a+++p l+ dg+ 
   MMETSP1137-20121227|38_1 147 PDIQFREQGYLFLASDKGE-KVLRENHETQRSRGvDWMSLLTQDELARQFPWLNVDGIS 204
                489***********98776.688888887777765889*************99999875 PP

  == domain 3    score: 1.9 bits;  conditional E-value: 0.065
  TIGR03364 315 lkelevverWqGvYasskeaeilveeiddgvtv 347
                + +l+v+++W+G Y   +  +  +++  + +++
   MMETSP1137-20121227|38_1 439 FGSLKVQSSWAGFYEYNTFDQNAIKAHIHMCQI 471
                56789*********9999666666655555555 PP

>> TIGR02352  thiamin_ThiO: glycine oxidase ThiO
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.1   0.0   2.5e-12     8e-10       1     172 [.      66     240 ..      66     263 .. 0.74

  Alignments for each domain:
  == domain 1    score: 36.1 bits;  conditional E-value: 2.5e-12
  TIGR02352   1 vlviGgGviGlsvAv..eLakrghkvtllekdevgsgAsk.aAaGmLapvaEveiaeeallrLaleSlrlypelleelk..eltgldveykeeGilvvaadeddaeklreladlqsktg.leleslskealrelePels.eeirga.vflpedaqvdprellkaLvkaleklGveiieev 172
                vl++GgGv+G s+A+  +L++ g++v ++e+d+   +As+   aG L  +  +     a ++L+l+  +  + +   l+       d++++e+G l +a d+ + + lre +++q+  g + ++ l++++l+++ P l+ ++i+ + +   +++  dp +ll+a++++ + +Gv  i+  
   MMETSP1137-20121227|38_1  66 VLIVGGGVMGASIAYhtKLLRPGMRVCVVERDPQYIHASAmLSAGGLRQQFSLA----ANIDLSLYGIDFLRRVPTDLRlpGEDAPDIQFREQGYLFLASDKGE-KVLRENHETQRSRGvDWMSLLTQDELARQFPWLNvDGISLGsLGEANEGWFDPWALLTAMRAKSAAMGVAYIKGA 240
                79************844699************5444444414555555555554....446666666666666665553004455689**********988766.68999999**999945556789*********9993455555155678999*******************998843 PP

>> TIGR02032  GG-red-SF: geranylgeranyl reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.0   6.5e-07   0.00021       1      32 [.      64      97 ..      64     124 .. 0.84

  Alignments for each domain:
  == domain 1    score: 18.9 bits;  conditional E-value: 6.5e-07
  TIGR02032  1 yDvvvvGaGpaGssaAlrla..kkGlrVlllekk 32
               yDv++vG+G  G+s+A++++  + G+rV ++e+ 
   MMETSP1137-20121227|38_1 64 YDVLIVGGGVMGASIAYHTKllRPGMRVCVVERD 97
               9****************9643399********97 PP

>> TIGR01790  carotene-cycl: lycopene cyclase family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   5.1e-06    0.0016       1      35 [.      65     101 ..      65     106 .. 0.90
   2 ?   -1.5   0.0      0.73   2.3e+02     352     376 ..     445     469 ..     422     476 .. 0.76

  Alignments for each domain:
  == domain 1    score: 15.5 bits;  conditional E-value: 5.1e-06
  TIGR01790   1 DliviGgGlAglaiAlela..kpglrvqlieaapklp 35 
                D++++GgG  g  iA + +  +pg+rv+++e  p+ +
   MMETSP1137-20121227|38_1  65 DVLIVGGGVMGASIAYHTKllRPGMRVCVVERDPQYI 101
                9**************998888**********988865 PP

  == domain 2    score: -1.5 bits;  conditional E-value: 0.73
  TIGR01790 352 kelierFlaarlsladllrvllrlf 376
                ++ +++F+  +++ ++ +++ +++ 
   MMETSP1137-20121227|38_1 445 QSSWAGFYEYNTFDQNAIKAHIHMC 469
                5679999998888888888888775 PP

>> TIGR00562  proto_IX_ox: protoporphyrinogen oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.0   6.8e-06    0.0021       3      37 ..      64      98 ..      62     100 .. 0.93

  Alignments for each domain:
  == domain 1    score: 14.5 bits;  conditional E-value: 6.8e-06
  TIGR00562  3 kkvvvvGgGisGLciayalekerpdvelvlvEakd 37
                +v +vGgG+ G +iay  + +rp++ + +vE ++
   MMETSP1137-20121227|38_1 64 YDVLIVGGGVMGASIAYHTKLLRPGMRVCVVERDP 98
               689*****************************986 PP

>> TIGR03197  MnmC_Cterm: tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.0   9.6e-06     0.003       1     127 [.      65     194 ..      65     254 .. 0.59

  Alignments for each domain:
  == domain 1    score: 14.5 bits;  conditional E-value: 9.6e-06
  TIGR03197   1 kvavIGaGiAgaalal..sLarrGvqvtllekdeklaqgASgnrqGalypllsaddnalsrfllaaflyarrlleql...aeagvefdhelcgvlqlavdekeaerlqklleqlklpeellravdaeeasel 127
                +v+++G+G+ ga++a+  +L r G++v ++e+d++  +      +G l  + s   n    ++l +  + rr+ + l    e+  +++++ +g l la d+ e+   ++  +q     + ++ ++++e +++
   MMETSP1137-20121227|38_1  65 DVLIVGGGVMGASIAYhtKLLRPGMRVCVVERDPQYIHASAMLSAGGLRQQFSLAAN--IDLSLYGIDFLRRVPTDLrlpGEDAPDIQFREQGYLFLASDKGEKVLRENHETQRSRGVDWMSLLTQDELARQ 194
                599******99999974479*************998844444455556655555443..3445555555555555543332334455666666666666555555555555544555555555555555555 PP

>> TIGR01373  soxB: sarcosine oxidase, beta subunit family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.0   0.0   4.5e-05     0.014      29     161 ..      62     201 ..      50     205 .. 0.76
   2 ?   -4.2   0.0       3.9   1.2e+03     324     341 ..     437     454 ..     425     464 .. 0.75

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 4.5e-05
  TIGR01373  29 peydviivGgGGhGlatayylakehGitnvavlekg..wlGgGnvgrnttivrsnylydesaelyelalklweGlskdlny......nvmlsqrGvlnlahstadlevlarrvnamrlnGvd.aellspeqvkkliplldvs 161
                ++ydv+ivGgG  G + ay+        +v v+e++  ++ +  +   +  +r  + + ++ +l  + + +   +  dl        ++ + ++G l la  +   +vl+ + +++r +Gvd   ll+++++++  p l+v+
   MMETSP1137-20121227|38_1  62 ATYDVLIVGGGVMGASIAYHTKLLRPGMRVCVVERDpqYIHASAM-LSAGGLRQQFSLAANIDLSLYGIDFLRRVPTDLRLpgedapDIQFREQGYLFLASDK-GEKVLRENHETQRSRGVDwMSLLTQDELARQFPWLNVD 201
                79******************999888899****985437776655.456678999999998888777777777777777653333336888889988887554.44666677788899999944788889999999999987 PP

  == domain 2    score: -4.2 bits;  conditional E-value: 3.9
  TIGR01373 324 pilsrvrllrswgGivdv 341
                 +++ +++  sw+G  + 
   MMETSP1137-20121227|38_1 437 EAFGSLKVQSSWAGFYEY 454
                578899999999998764 PP

>> TIGR01789  lycopene_cycl: lycopene cyclase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0     6e-05     0.019       1      35 [.      65      99 ..      65     105 .. 0.93

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 6e-05
  TIGR01789  1 dvivvGgGlagglialrlqdarPdlrilvieaaas 35
               dv++vGgG+ g+ ia   +  rP +r+ v+e  ++
   MMETSP1137-20121227|38_1 65 DVLIVGGGVMGASIAYHTKLLRPGMRVCVVERDPQ 99
               89****************************98765 PP

>> TIGR03140  AhpF: alkyl hydroperoxide reductase, F subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   9.4e-05      0.03     207     241 ..      58      94 ..      42      97 .. 0.80

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 9.4e-05
  TIGR03140 207 eeekekydvlvvGgGPagaaaaiya..arkGlkvalv 241
                ++  ++ydvl+vGgG  ga+ a ++   r G++v++v
   MMETSP1137-20121227|38_1  58 SNLGATYDVLIVGGGVMGASIAYHTklLRPGMRVCVV 94 
                445578****************99844599*999998 PP

>> TIGR02023  BchP-ChlP: geranylgeranyl reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   0.00017     0.054       1      32 [.      64      97 ..      64     105 .. 0.87

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 0.00017
  TIGR02023  1 ydvlviGggpsGaaaa..etLakagievillere 32
               ydvl++Ggg+ Ga+ a   +L + g++v ++er+
   MMETSP1137-20121227|38_1 64 YDVLIVGGGVMGASIAyhTKLLRPGMRVCVVERD 97
               89************99334699**********97 PP

>> TIGR01320  mal_quin_oxido: malate dehydrogenase (acceptor)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.0   0.00018     0.058       2      36 ..      65      99 ..      64     111 .. 0.88

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 0.00018
  TIGR01320  2 dvvlvGaGimsatlgvllkelePsweitlierlea 36
               dv++vG+G+m a+++   k l P +++ ++er  +
   MMETSP1137-20121227|38_1 65 DVLIVGGGVMGASIAYHTKLLRPGMRVCVVERDPQ 99
               9******************************9654 PP

>> TIGR03385  CoA_CoA_reduc: CoA-disulfide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.0   0.00019     0.061       2      40 ..      66     104 ..      65     108 .. 0.91

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 0.00019
  TIGR03385   2 ivivGgvaaGasaAsrvrRLkkesdiivfekteivsfan 40 
                ++ivGg+  Gas+A + + L++ + + v+e++    +a+
   MMETSP1137-20121227|38_1  66 VLIVGGGVMGASIAYHTKLLRPGMRVCVVERDPQYIHAS 104
                78*****************************98888876 PP

>> TIGR01377  soxA_mon: sarcosine oxidase, monomeric form
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   0.1   0.00025     0.079       1      30 [.      64      95 ..      64     240 .. 0.85

  Alignments for each domain:
  == domain 1    score: 9.5 bits;  conditional E-value: 0.00025
  TIGR01377  1 fDvivvGaGvmGsaaayq..LakrgkkvLLle 30
               +Dv++vG GvmG++ ay+  L + g +v ++e
   MMETSP1137-20121227|38_1 64 YDVLIVGGGVMGASIAYHtkLLRPGMRVCVVE 95
               8****************844566677776666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (496 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       135  (0.0329108); expected 82.0 (0.02)
Passed bias filter:                      123  (0.0299854); expected 82.0 (0.02)
Passed Vit filter:                        42  (0.0102389); expected 4.1 (0.001)
Passed Fwd filter:                        13  (0.00316919); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.53u 0.39s 00:00:00.92 Elapsed: 00:00:00.98
# Mc/sec: 668.03
//
Query:       MMETSP1137-20121227|39_1  [L=250]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (250 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       107  (0.0260848); expected 82.0 (0.02)
Passed bias filter:                      107  (0.0260848); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.30s 00:00:00.58 Elapsed: 00:00:00.65
# Mc/sec: 507.65
//
Query:       MMETSP1137-20121227|40_1  [L=506]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (506 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       116  (0.0282789); expected 82.0 (0.02)
Passed bias filter:                       99  (0.0241346); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.27s 00:00:00.64 Elapsed: 00:00:00.69
# Mc/sec: 967.92
//
Query:       MMETSP1137-20121227|41_1  [L=88]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (88 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        92  (0.0224281); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.29s 00:00:00.46 Elapsed: 00:00:00.45
# Mc/sec: 258.11
//
Query:       MMETSP1137-20121227|42_1  [L=80]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (80 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       106  (0.0258411); expected 82.0 (0.02)
Passed bias filter:                      100  (0.0243784); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.23s 00:00:00.41 Elapsed: 00:00:00.60
# Mc/sec: 175.99
//
Query:       MMETSP1137-20121227|43_1  [L=464]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (464 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       301  (0.0733788); expected 82.0 (0.02)
Passed bias filter:                       98  (0.0238908); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.33s 00:00:00.69 Elapsed: 00:00:00.49
# Mc/sec: 1249.86
//
Query:       MMETSP1137-20121227|44_1  [L=65]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (65 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        26  (0.00633837); expected 82.0 (0.02)
Passed bias filter:                       25  (0.00609459); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.20s 00:00:00.34 Elapsed: 00:00:00.34
# Mc/sec: 252.33
//
Query:       MMETSP1137-20121227|45_1  [L=115]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (115 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        97  (0.023647); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.24s 00:00:00.41 Elapsed: 00:00:00.39
# Mc/sec: 389.20
//
Query:       MMETSP1137-20121227|46_1  [L=241]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.2e-06   25.7   0.0    1.5e-06   25.3   0.0    1.1  1  TIGR00225 prc: C-terminal processing peptidase
    8.8e-06   22.7   0.0    1.2e-05   22.3   0.0    1.1  1  TIGR01941 nqrF: NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit


Domain annotation for each model (and alignments):
>> TIGR00225  prc: C-terminal processing peptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.3   0.0   7.4e-10   1.5e-06      65     155 ..      59     149 ..      30     161 .. 0.89

  Alignments for each domain:
  == domain 1    score: 25.3 bits;  conditional E-value: 7.4e-10
  TIGR00225  65 vivsplegsPAekag.ikpgDkIikvdgksvagmelddavelirGkkgtkvkleieragkkktlelelkrekieletvkaevkkvegkkvgy 155
                 ++s+  ++ Ae +g +++gD++++v+g+ v g+ + da+ ++    g+++ l   r+ ++++l+ +l  +     +v+++v ++++ ++  
   MMETSP1137-20121227|46_1  59 YVMSLTPNGAAECSGqVQVGDQLVAVGGQGVLGLTVADAMTKMAAATGSQIDLVFFRG-TREELQSQLAASIETPASVQITVAQEGKPNITF 149
                58999999*************************************************7.788899888866556678999999998888765 PP

>> TIGR01941  nqrF: NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.3   0.0   5.7e-09   1.2e-05      30     124 ..     135     236 ..     124     241 .] 0.79

  Alignments for each domain:
  == domain 1    score: 22.3 bits;  conditional E-value: 5.7e-09
  TIGR01941  30 gdvtikinddeeksltveaGdkllntlaskgifis......sacGGggscgqcrvrvvegggeilptekshis.kreakegwrlscqvkvkedleleleeev 124
                 ++t+  + + + ++ ++ G +l + l ++ i +       + c G+  cg c v v++g ++     ++  s  re+   ++l+c ++v  d+ ++l+ ev
   MMETSP1137-20121227|46_1 135 VQITVAQEGKPNITFMAPYGANLRDELVARKINVYqsvtrwTNCNGKQLCGTCIVDVKDGLDNCTRRSLDESStLRENPATYKLACITNVYGDVAVQLHPEV 236
                4566666677788888999999999999998877422222257********************99988776551689999*****************99886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (241 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       145  (0.0353486); expected 82.0 (0.02)
Passed bias filter:                      123  (0.0299854); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.28u 0.30s 00:00:00.58 Elapsed: 00:00:00.56
# Mc/sec: 568.02
//
Query:       MMETSP1137-20121227|47_1  [L=274]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (274 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        85  (0.0207216); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.23s 00:00:00.47 Elapsed: 00:00:00.46
# Mc/sec: 786.20
//
Query:       MMETSP1137-20121227|48_1  [L=678]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.1e-14   48.8   0.1    1.2e-13   48.2   0.1    1.1  1  TIGR03788 marine_srt_targ: marine proteobacterial sortase target protein


Domain annotation for each model (and alignments):
>> TIGR03788  marine_srt_targ: marine proteobacterial sortase target protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.2   0.1   2.9e-17   1.2e-13     266     440 ..     260     450 ..     254     454 .. 0.83

  Alignments for each domain:
  == domain 1    score: 48.2 bits;  conditional E-value: 2.9e-17
  TIGR03788 266 aaqslkRevvfviDtsGsmagesieqAksalllalsqLkpkDrfnvieFdsdvellfkk.....avpAtaenlerArqfvagLqAdGGtEmaeaLeaale....daasee.sgalrqvvFltDG.......avgnEealfklietklgdsRlftvgiGsaPnsyfmrkAAelGrGsftqigdtdevqeklse 440
                aa s +++vv ++D sGsm g+    A +al++ ++ L+  D f v+ F sd++++++      +  At++n e+  + v++L   G t+ ++a +++++    ++a+e  sg    v+FltDG       +v+  +al+ + + ++g   +ft ++G    +   ++ A +  G +t+i d  + ++ + +
   MMETSP1137-20121227|48_1 260 AASSGPKDVVIILDISGSMLGARFDRAVEALEQVINSLTVADYFAVVPFSSDTSKFSELnagnfMQQATTSNKEKVLEGVRSLLIGGSTNFYSAFNTTFDllarSRATEFtSGCRTAVLFLTDGemtgtayTVADVQALIASSNVNIGA-TIFTYSLGRDSDRTTPKEIACAAGGIYTYIPDGTDLRDAMGA 450
                5667789********************************************99998864112224579999**************************9998888666665155555799*****4444444466677777777777775.599*****9999999999999999*****9999998888865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (678 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       144  (0.0351048); expected 82.0 (0.02)
Passed bias filter:                      125  (0.0304729); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.28s 00:00:00.78 Elapsed: 00:00:00.99
# Mc/sec: 903.93
//
Query:       MMETSP1137-20121227|49_1  [L=390]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (390 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        61  (0.0148708); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.21s 00:00:00.53 Elapsed: 00:00:00.84
# Mc/sec: 612.81
//
Query:       MMETSP1137-20121227|50_1  [L=308]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.023   10.6   0.0       0.59    5.9   0.0    2.0  2  TIGR00870 trp: transient-receptor-potential calcium channel protein


Domain annotation for each model (and alignments):
>> TIGR00870  trp: transient-receptor-potential calcium channel protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.0   0.00054       2.2     178     211 ..     172     205 ..     170     207 .. 0.92
   2 ?    5.9   0.0   0.00014      0.59     130     158 ..     204     232 ..     202     239 .. 0.92

  Alignments for each domain:
  == domain 1    score: 4.0 bits;  conditional E-value: 0.00054
  TIGR00870 178 gespLnlaaclasesivsllsedpAdiltadslg 211
                g+ pL + a+++ +    ll++++Adi++ d +g
   MMETSP1137-20121227|50_1 172 GRTPLHFMAGVGLAPACVLLIQFGADIEAIDGQG 205
                89***************************99877 PP

  == domain 2    score: 5.9 bits;  conditional E-value: 0.00014
  TIGR00870 130 kgitalilAihkqnyeivklLlekgasve 158
                +g t++++A+   n +++k+L++ ga++ 
   MMETSP1137-20121227|50_1 204 QGLTPVHMAAGYANAQTLKVLIAAGADLT 232
                589***********************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (308 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       129  (0.0314481); expected 82.0 (0.02)
Passed bias filter:                      113  (0.0275475); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.36s 00:00:00.69 Elapsed: 00:00:00.90
# Mc/sec: 451.70
//
Query:       MMETSP1137-20121227|51_1  [L=226]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (226 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       131  (0.0319356); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.17s 00:00:00.38 Elapsed: 00:00:00.49
# Mc/sec: 608.77
//
Query:       MMETSP1137-20121227|52_1  [L=367]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (367 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       162  (0.0394929); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.27s 00:00:00.59 Elapsed: 00:00:00.76
# Mc/sec: 637.37
//
Query:       MMETSP1137-20121227|53_1  [L=287]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (287 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        62  (0.0151146); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.21s 00:00:00.46 Elapsed: 00:00:00.54
# Mc/sec: 701.50
//
Query:       MMETSP1137-20121227|54_1  [L=584]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (584 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       100  (0.0243784); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.31s 00:00:00.72 Elapsed: 00:00:00.88
# Mc/sec: 875.93
//
Query:       MMETSP1137-20121227|55_1  [L=174]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (174 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       100  (0.0243784); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.22s 00:00:00.42 Elapsed: 00:00:00.47
# Mc/sec: 488.64
//
Query:       MMETSP1137-20121227|56_1  [L=107]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (107 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        59  (0.0143832); expected 82.0 (0.02)
Passed bias filter:                       39  (0.00950756); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.30s 00:00:00.48 Elapsed: 00:00:00.54
# Mc/sec: 261.53
//
Query:       MMETSP1137-20121227|57_1  [L=252]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (252 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       160  (0.0390054); expected 82.0 (0.02)
Passed bias filter:                      123  (0.0299854); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.28s 00:00:00.56 Elapsed: 00:00:00.52
# Mc/sec: 639.64
//
Query:       MMETSP1137-20121227|58_1  [L=122]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (122 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        97  (0.023647); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.31s 00:00:00.50 Elapsed: 00:00:00.45
# Mc/sec: 357.84
//
Query:       MMETSP1137-20121227|59_1  [L=517]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (517 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       151  (0.0368113); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.38s 00:00:00.76 Elapsed: 00:00:00.57
# Mc/sec: 1176.52
//
Query:       MMETSP1137-20121227|61_1  [L=395]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (395 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       128  (0.0312043); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.21s 00:00:00.51 Elapsed: 00:00:00.56
# Mc/sec: 930.99
//
Query:       MMETSP1137-20121227|62_1  [L=106]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (106 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        54  (0.0131643); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.28s 00:00:00.46 Elapsed: 00:00:00.50
# Mc/sec: 279.82
//
Query:       MMETSP1137-20121227|63_1  [L=318]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (318 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       147  (0.0358362); expected 82.0 (0.02)
Passed bias filter:                      110  (0.0268162); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.27s 00:00:00.58 Elapsed: 00:00:00.45
# Mc/sec: 932.72
//
Query:       MMETSP1137-20121227|64_1  [L=236]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (236 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        36  (0.00877621); expected 82.0 (0.02)
Passed bias filter:                       36  (0.00877621); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.17s 00:00:00.40 Elapsed: 00:00:00.43
# Mc/sec: 724.41
//
Query:       MMETSP1137-20121227|65_1  [L=211]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.4e-52  173.6   0.0    9.6e-52  173.3   0.0    1.1  1  TIGR00401 msrA: peptide-methionine (S)-S-oxide reductase


Domain annotation for each model (and alignments):
>> TIGR00401  msrA: peptide-methionine (S)-S-oxide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  173.3   0.0   2.3e-55   9.6e-52       3     148 ..      52     195 ..      50     199 .. 0.95

  Alignments for each domain:
  == domain 1    score: 173.3 bits;  conditional E-value: 2.3e-55
  TIGR00401   3 itfalGCfWgveklfrkidgvektkvGylngktenPtyeevCsgdtghaevvkveydpkvvsleeLldvffevidPttanrqgnDkGtqyrsgiyalsdedekaaeaskerlqesakykkkivteiekaenfyeaeeyhqqylkkn 148
                +++a+GCfWgve +f +i+gv  t vGy++g+  + ty+ v  g+tghae+v++ ydp +vs+ eLl vff+++dPtt nrqgnD+Gtqyrs+i++ +++++ +a+a   +  es + +kk++t ie+++ fy ae yhq+yl+k 
   MMETSP1137-20121227|65_1  52 MIIAAGCFWGVELAFARIPGVLFTDVGYTGGHAADATYRAVSRGTTGHAEAVRIGYDPTQVSYAELLGVFFDIHDPTTLNRQGNDVGTQYRSAIFVADEAERSIAQAAIAA--ESMRLSKKVATTIEELDVFYPAESYHQHYLEKG 195
                689************************************************************************************************999999887765..4569***************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (211 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       125  (0.0304729); expected 82.0 (0.02)
Passed bias filter:                      113  (0.0275475); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.23u 0.18s 00:00:00.41 Elapsed: 00:00:00.30
# Mc/sec: 928.32
//
Query:       MMETSP1137-20121227|66_1  [L=463]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (463 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        54  (0.0131643); expected 82.0 (0.02)
Passed bias filter:                       44  (0.0107265); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.21s 00:00:00.55 Elapsed: 00:00:00.38
# Mc/sec: 1608.18
//
Query:       MMETSP1137-20121227|67_1  [L=90]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (90 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        47  (0.0114578); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.17s 00:00:00.32 Elapsed: 00:00:00.31
# Mc/sec: 383.19
//
Query:       MMETSP1137-20121227|68_1  [L=396]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (396 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       121  (0.0294978); expected 82.0 (0.02)
Passed bias filter:                      102  (0.0248659); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.28s 00:00:00.62 Elapsed: 00:00:00.64
# Mc/sec: 816.68
//
Query:       MMETSP1137-20121227|70_1  [L=192]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (192 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       162  (0.0394929); expected 82.0 (0.02)
Passed bias filter:                      102  (0.0248659); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.23s 00:00:00.47 Elapsed: 00:00:00.46
# Mc/sec: 550.91
//
Query:       MMETSP1137-20121227|71_1  [L=163]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00041   17.3   0.1    0.00052   17.0   0.0    1.1  1  TIGR01574 miaB-methiolase: tRNA-i(6)A37 thiotransferase enzyme MiaB
    0.00059   16.5   0.1    0.00078   16.1   0.0    1.1  1  TIGR00089 TIGR00089: radical SAM methylthiotransferase, MiaB/RimO family
     0.0081   12.8   0.1      0.012   12.2   0.0    1.2  1  TIGR01578 MiaB-like-B: MiaB-like tRNA modifying enzyme, archaeal-type


Domain annotation for each model (and alignments):
>> TIGR01574  miaB-methiolase: tRNA-i(6)A37 thiotransferase enzyme MiaB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.0   3.8e-07   0.00052       2      21 ..     134     153 ..     133     161 .. 0.86

  Alignments for each domain:
  == domain 1    score: 17.0 bits;  conditional E-value: 3.8e-07
  TIGR01574   2 lfiktyGCqmnvadsekmad 21 
                ++i+tyGCqmnv d+e++ +
   MMETSP1137-20121227|71_1 134 VYIETYGCQMNVSDTEVIFA 153
                69*************99865 PP

>> TIGR00089  TIGR00089: radical SAM methylthiotransferase, MiaB/RimO family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0   5.7e-07   0.00078       2      19 ..     134     151 ..     133     158 .. 0.91

  Alignments for each domain:
  == domain 1    score: 16.1 bits;  conditional E-value: 5.7e-07
  TIGR00089   2 vyietyGCqmNeadsevm 19 
                vyietyGCqmN+ d+ev+
   MMETSP1137-20121227|71_1 134 VYIETYGCQMNVSDTEVI 151
                89**************98 PP

>> TIGR01578  MiaB-like-B: MiaB-like tRNA modifying enzyme, archaeal-type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.2   0.0   8.9e-06     0.012       2      20 ..     134     152 ..     133     157 .. 0.90

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 8.9e-06
  TIGR01578   2 vyvetyGCalnkadseiik 20 
                vy+etyGC +n +d+e+i 
   MMETSP1137-20121227|71_1 134 VYIETYGCQMNVSDTEVIF 152
                9***************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (163 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        82  (0.0199902); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.19u 0.29s 00:00:00.48 Elapsed: 00:00:00.68
# Mc/sec: 316.39
//
Query:       MMETSP1137-20121227|72_1  [L=188]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (188 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        54  (0.0131643); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.24s 00:00:00.44 Elapsed: 00:00:00.42
# Mc/sec: 590.81
//
Query:       MMETSP1137-20121227|73_1  [L=417]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (417 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       184  (0.0448562); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.27s 00:00:00.57 Elapsed: 00:00:00.42
# Mc/sec: 1310.46
//
Query:       MMETSP1137-20121227|74_1  [L=159]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (159 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        95  (0.0231594); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.18s 00:00:00.37 Elapsed: 00:00:00.30
# Mc/sec: 699.54
//
Query:       MMETSP1137-20121227|77_1  [L=526]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.016   12.2  11.4       0.42    7.6   0.0    2.2  2  TIGR00601 rad23: UV excision repair protein Rad23
        5.9    3.1  17.3        9.2    2.5  12.0    1.2  1  TIGR01348 PDHac_trf_long: dihydrolipoyllysine-residue acetyltransferase


Domain annotation for each model (and alignments):
>> TIGR00601  rad23: UV excision repair protein Rad23
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   0.0   0.00021      0.42       2      88 ..       8      92 ..       7     173 .. 0.78
   2 ?    1.3   8.8     0.017        34      75     124 ..     389     439 ..     358     461 .. 0.56

  Alignments for each domain:
  == domain 1    score: 7.6 bits;  conditional E-value: 0.00021
  TIGR00601  2 kltlKtlkqqkfkidlepdetvkelKekiesekgkdayevaqqkLi.yaGkiLsDdktvkeykikekdfvvvmvskkKavkakaaePa 88
               ++t+K  kq+   + l+ d  v e K  ++s  g   ++ ++qk++   G + +Dd t +  ++k+++ +++m + +K  +    +P 
   MMETSP1137-20121227|77_1  8 TVTVKWGKQKLEAVPLQLDAPVIEFKAVLQSLTG---VPAERQKIMgVKGGLPKDDATWEGLGVKQGQALMLMGTAEKVPEPPPDAPV 92
               7899998888888999******************...*******9846899***********************99998874333333 PP

  == domain 2    score: 1.3 bits;  conditional E-value: 0.017
  TIGR00601  75 skkKavkakaaePaatpesaptptp.satpasvaekksaaPasaveeessa 124
                +k+ a++ ++ + +a+p++a++p+  +a++a+ a+++++a +s++++ s +
   MMETSP1137-20121227|77_1 389 TKPDAQTDASMDVDAAPAAAAAPAApAAPAAAAAAAPAEAASSSAAPASAP 439
                344444444444455555555554433333333333333333333333333 PP

>> TIGR01348  PDHac_trf_long: dihydrolipoyllysine-residue acetyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5  12.0    0.0045       9.2      80     154 ..     369     442 ..     354     472 .. 0.68

  Alignments for each domain:
  == domain 1    score: 2.5 bits;  conditional E-value: 0.0045
  TIGR01348  80 addaeekaeaasaaagaadaakdveaeqalisveadkaaqevqdafketvkageagaaadaakkeaaPaeaqasg 154
                + +ae+kaeaa aa++ a+ +k    ++a + v+a  aa + ++a +  + a+ a+a+a+aa+ +aaPa a+   
   MMETSP1137-20121227|77_1 369 EAEAEAKAEAAKAAKAEAEGTKPDAQTDASMDVDAAPAAAAAPAAPAAPA-AAAAAAPAEAASSSAAPASAPVED 442
                33788888888888877777766555666666666666666666555544.445778888889999998885443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (526 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       159  (0.0387616); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                        19  (0.00463189); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.28s 00:00:00.69 Elapsed: 00:00:00.51
# Mc/sec: 1361.30
//
Query:       MMETSP1137-20121227|78_1  [L=208]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (208 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       133  (0.0324232); expected 82.0 (0.02)
Passed bias filter:                      130  (0.0316919); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.33s 00:00:00.58 Elapsed: 00:00:00.51
# Mc/sec: 538.31
//
Query:       MMETSP1137-20121227|79_1  [L=301]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.6e-31  105.9   0.1      5e-31  105.4   0.1    1.2  1  TIGR01292 TRX_reduct: thioredoxin-disulfide reductase
    2.3e-22   77.1   1.3    3.6e-22   76.5   0.9    1.4  1  TIGR03143 AhpF_homolog: putative alkyl hydroperoxide reductase F subunit
    2.8e-18   63.6   0.6    4.7e-18   62.8   0.1    1.6  2  TIGR03140 AhpF: alkyl hydroperoxide reductase, F subunit
    2.4e-13   48.0   0.0    4.8e-13   47.0   0.0    1.4  1  TIGR01068 thioredoxin: thioredoxin
    4.8e-12   43.9   0.0    8.3e-12   43.2   0.0    1.4  1  TIGR01126 pdi_dom: protein disulfide-isomerase domain
    4.4e-09   34.2   0.0    6.9e-09   33.6   0.0    1.3  1  TIGR01130 ER_PDI_fam: protein disulfide isomerases
    4.5e-06   23.4   1.2    2.3e-05   21.1   0.1    2.0  2  TIGR01350 lipoamide_DH: dihydrolipoyl dehydrogenase
    0.00031   18.6   0.0    0.00087   17.2   0.0    1.8  1  TIGR00411 redox_disulf_1: redox-active disulfide protein 1
     0.0013   14.1   0.1     0.0014   13.9   0.1    1.2  1  TIGR03315 Se_ygfK: putative selenate reductase, YgfK subunit
     0.0019   14.9   0.5     0.0032   14.1   0.3    1.4  1  TIGR01316 gltA: glutamate synthase (NADPH), homotetrameric
     0.0028   14.7   0.1     0.0056   13.7   0.0    1.5  2  TIGR03169 Nterm_to_SelD: pyridine nucleotide-disulfide oxidoreductase family protein
     0.0043   13.8   0.0      0.006   13.3   0.0    1.3  1  TIGR01317 GOGAT_sm_gam: glutamate synthase, NADH/NADPH, small subunit
     0.0054   13.4   0.1      0.012   12.3   0.0    1.6  1  TIGR04018 Bthiol_YpdA: putative bacillithiol system oxidoreductase, YpdA family
  ------ inclusion threshold ------
      0.026   12.1   0.0      0.046   11.3   0.0    1.4  1  TIGR02187 GlrX_arch: glutaredoxin-like domain protein


Domain annotation for each model (and alignments):
>> TIGR01292  TRX_reduct: thioredoxin-disulfide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  105.4   0.1   1.7e-33     5e-31     145     276 ..       1     139 [.       1     149 [. 0.88

  Alignments for each domain:
  == domain 1    score: 105.4 bits;  conditional E-value: 1.7e-33
  TIGR01292 145 avvGggdsAveealyLskiakkVt.lvhrrdklraekillerlkknekievllnstv.......eeikGdekvesvkikntktkeeeelkvdgvFiaiGhepntellkelleldeegyivvdee.mrTsveGvfaaGDvrd 276
                avvGggdsA+eealyL+++a+kV+ lv   d   a+++++er+k+n+++ev+++++v       e ++G++ ++ + +++++t++ +el v g+F+aiG  pnt      +e+d+ +yiv+++  + Tsv+GvfaaGDv+d
   MMETSP1137-20121227|79_1   1 AVVGGGDSACEEALYLTRYASKVYqLVYTSDFDTASQVMQERVKANSDVEVIYSTKVadvlpmtESVSGESPIRALLLEDVNTGDRTELPVRGLFYAIGNVPNTRA--XXVEVDRLNYIVTHKDgVATSVDGVFAAGDVMD 139
                69*********************945555566689********************9822223324578999*********************************86..56999********9988**************98 PP

>> TIGR03143  AhpF_homolog: putative alkyl hydroperoxide reductase F subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.5   0.9   1.2e-24   3.6e-22     148     340 ..       2     185 ..       1     272 [. 0.75

  Alignments for each domain:
  == domain 1    score: 76.5 bits;  conditional E-value: 1.2e-24
  TIGR03143 148 viGgGfaaaeeavfltkyakkvtvivrepdf.tcakaiaekvkanPkievkfnvelkev.......tGddvlreakfvnnatGeeteykakkdegtfGvfvfvGyvPsselfkgkvelderGyvvtned.letnveGvyaaGdlrvkelrqvvtavadGaiaateleryvkelkeklGieea..yeeeeakekeekseeektpv 340
                v+GgG +a eea++lt+ya+kv  +v   df t ++++ e+vkan  +ev + + + +v       +G++ +r+  + + +tG++te          G+f  +G+vP++      ve+d   y+vt++d + t+v+Gv+aaGd+             dG  aa  +ery+ e+   + ++ +  + e  ++++ee+s+   +p+
   MMETSP1137-20121227|79_1   2 VVGGGDSACEEALYLTRYASKVYQLVYTSDFdTASQVMQERVKANSDVEVIYSTKVADVlpmtesvSGESPIRALLLEDVNTGDRTELP------VRGLFYAIGNVPNTRA--XXVEVDRLNYIVTHKDgVATSVDGVFAAGDV------------MDGGGAALAAERYLAEKGLAVQVKPEpaMVEAAEEAAEEASAPAAEPA 185
                9******************************455677789**************99765222222158888888888888888888877......559**********985..689**********86549************5............799999999999999887666655430033333344444444444444 PP

>> TIGR03140  AhpF: alkyl hydroperoxide reductase, F subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.8   0.1   1.6e-20   4.7e-18     356     488 ..       1     139 [.       1     141 [. 0.86
   2 ?   -1.3   0.0      0.44   1.3e+02     217     239 ..     137     159 ..     137     161 .. 0.86

  Alignments for each domain:
  == domain 1    score: 62.8 bits;  conditional E-value: 1.6e-20
  TIGR03140 356 aviGGGnsGieaaidlaGivehvtvlefadel.kadkvlveklkslsnvdiltsaktkeivgdg......dkvtglkykdrsseeekkleldGvfvqiGlvpnteflkdavelnrrGeividerg.rtsvkGifaaGdvtt 488
                av+GGG+s  e a+ l+   ++v  l +++++  a +v++e++k  s+v+++ s+k  +++         + +++l ++d +++++ +l + G+f  iG vpnt      ve++r   iv+ + g +tsv+G+faaGdv +
   MMETSP1137-20121227|79_1   1 AVVGGGDSACEEALYLTRYASKVYQLVYTSDFdTASQVMQERVKANSDVEVIYSTKVADVLPMTesvsgeSPIRALLLEDVNTGDRTELPVRGLFYAIGNVPNTRA--XXVEVDRLNYIVTHKDGvATSVDGVFAAGDVMD 139
                8***********************999998873699****************9998666654440000006677899***************************96..5799999999*999987479**********975 PP

  == domain 2    score: -1.3 bits;  conditional E-value: 0.44
  TIGR03140 217 vvGgGPagaaaaiyaarkGlkva 239
                v+ gG a+ aa  y a kGl v 
   MMETSP1137-20121227|79_1 137 VMDGGGAALAAERYLAEKGLAVQ 159
                5678999999**********986 PP

>> TIGR01068  thioredoxin: thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.0   0.0   1.7e-15   4.8e-13       7      98 ..     198     291 ..     193     293 .. 0.88

  Alignments for each domain:
  == domain 1    score: 47.0 bits;  conditional E-value: 1.7e-15
  TIGR01068   7 eetvassdklvlvDfwAeWCgpCkmlaPvleelakel..eekvkvvKlnvdeeqeiaakygirsiPtlllfkngkevkrvvGakpkaalkelie 98 
                ++ v+  + ++lv f  + Cg+C++laP+l  l k++   + v+v+ ++vd++ e a+++ ++  Pt+ +++ g+ ++++ G++p+a+  ++++
   MMETSP1137-20121227|79_1 198 ASYVSGVEGVALVKFVSPTCGACRALAPMLTRLLKKEfaPDAVTVLEVDVDSQVEWAKEAXVEGTPTVQVYRAGELAQSIRGVEPRATYISALK 291
                56666677789********************987654225789******************************************999887776 PP

>> TIGR01126  pdi_dom: protein disulfide-isomerase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.2   0.0   2.8e-14   8.3e-12       5      83 ..     196     273 ..     192     291 .. 0.86

  Alignments for each domain:
  == domain 1    score: 43.2 bits;  conditional E-value: 2.8e-14
  TIGR01126   5 nfdelvldenkdvlvefyaPWCGhCkklaPeyeklakelkkeeekvkiakvdataekelaskfkvsgfPtlkffkkgkk 83 
                 f + v+  + ++lv+f +P CG C++laP   +l k+  + ++ v++ +vd +++ e a++  v+g Pt++++++g+ 
   MMETSP1137-20121227|79_1 196 GFASYVSGVEGVALVKFVSPTCGACRALAPMLTRLLKKEFA-PDAVTVLEVDVDSQVEWAKEAXVEGTPTVQVYRAGEL 273
                5777788888899********************98776443.568******************************9985 PP

>> TIGR01130  ER_PDI_fam: protein disulfide isomerases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.6   0.0   2.3e-11   6.9e-09      11     110 ..     197     296 ..     192     300 .. 0.80

  Alignments for each domain:
  == domain 1    score: 33.6 bits;  conditional E-value: 2.3e-11
  TIGR01130  11 fddlikene.lvLveFYAPWCGHCksLaPeYekAAeelkkkspkvklakvDateekelaqkygvsGyPtLkifrngesssdYnGpReaegivkylkkqsgP 110
                f+++++  e ++Lv+F  P CG C++LaP   +  ++  + + +v++ +vD  ++ e a++  v+G Pt++++r ge ++   G    ++ ++ lk+   P
   MMETSP1137-20121227|79_1 197 FASYVSGVEgVALVKFVSPTCGACRALAPMLTRLLKKEFAPD-AVTVLEVDVDSQVEWAKEAXVEGTPTVQVYRAGELAQSIRGVEPRATYISALKEAGAP 296
                666666544278*****************9988766544444.6*********************************999988876666666666665555 PP

>> TIGR01350  lipoamide_DH: dihydrolipoyl dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1   0.1   7.9e-08   2.3e-05     175     318 ..       2     147 ..       1     154 [. 0.77
   2 ?    2.5   0.1     0.035        10     421     456 ..     144     179 ..     141     183 .. 0.84

  Alignments for each domain:
  == domain 1    score: 21.1 bits;  conditional E-value: 7.9e-08
  TIGR01350 175 ivGgGviGvEfasifaklGvkvtvielldrilpaldae.vskvlkkklkkkg.vkiltnakvtevekeedevv.........veakkk.evetleaekvLvavGrkpnleelgleklgveldergaikvd.eelrtnvpgiyaiGDvigklmLAhvA 318
                +vGgG   +E a  ++++ +kv       +++ + d +  s+v+++++k++  v+++ ++kv  v    ++v+         +e  ++ + ++l +  ++ a+G  pn++     +  ve+d+ ++i++  + + t+v+g++a GDv+++   A  A
   MMETSP1137-20121227|79_1   2 VVGGGDSACEEALYLTRYASKVY------QLVYTSDFDtASQVMQERVKANSdVEVIYSTKVADVLPMTESVSgespirallLEDVNTgDRTELPVRGLFYAIGNVPNTR-----AXXVEVDRLNYIVTHkDGVATSVDGVFAAGDVMDGGGAALAA 147
                89999999999999999999985......445555544168889999987766**********87777777766667677765555555889999999***********9.....6667777777887774779*************9876555555 PP

  == domain 2    score: 2.5 bits;  conditional E-value: 0.035
  TIGR01350 421 alaveleltveelaktihpHPtlsEaikeaalaalg 456
                ala e  l ++ la  + p P++ Ea +eaa++a+ 
   MMETSP1137-20121227|79_1 144 ALAAERYLAEKGLAVQVKPEPAMVEAAEEAAEEASA 179
                567777778889999****************99875 PP

>> TIGR00411  redox_disulf_1: redox-active disulfide protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.0     3e-06   0.00087       4      59 ..     210     267 ..     207     279 .. 0.83

  Alignments for each domain:
  == domain 1    score: 17.2 bits;  conditional E-value: 3e-06
  TIGR00411   4 elftsPtCPyCPkakkvv.eevakee.gdkvevekinvmedlkkaleyGimavPaivi 59 
                  f sPtC  C +   +     +ke+ +d+v v++++v+ + + a e  + + P++ +
   MMETSP1137-20121227|79_1 210 VKFVSPTCGACRALAPMLtRLLKKEFaPDAVTVLEVDVDSQVEWAKEAXVEGTPTVQV 267
                569********87655550557888658************************999865 PP

>> TIGR03315  Se_ygfK: putative selenate reductase, YgfK subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.1   4.9e-06    0.0014     754     822 ..      80     145 ..       1     163 [. 0.89

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 4.9e-06
  TIGR03315 754 pvetgelveleadaviaavGeqvdtellkklgieldekgkvvvneetketsvtnvfviGdakkGPativ 822
                 v+tg+  el++  +  a+G+  +t    +  +e+d+ +++v +++   tsv++vf +Gd+  G  + +
   MMETSP1137-20121227|79_1  80 DVNTGDRTELPVRGLFYAIGNVPNTR---AXXVEVDRLNYIVTHKDGVATSVDGVFAAGDVMDGGGAAL 145
                699*****************998875...678*****************************99876544 PP

>> TIGR01316  gltA: glutamate synthase (NADPH), homotetrameric
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.3   1.1e-05    0.0032     277     432 ..       2     145 ..       1     154 [. 0.71

  Alignments for each domain:
  == domain 1    score: 14.1 bits;  conditional E-value: 1.1e-05
  TIGR01316 277 viGgGntavdaartalrlGae.vhvvyrrtredmtareeeikhaeeeGvkfefllqpveviGdeeGevkavkfektelqeerdsgekrkvpvtdeevkleadavivaiGqeankiiaedsslktskrGtivvded.letsieGvfaGGdvirGeatvi 432
                v+GgG  a + a    r   +  ++vy    ++++   +e  +a+   v++ + ++  +v+   e  v +   ++  l+e+ ++g++ ++pv           +  aiG+ +n    +   +++ +   iv ++d   ts++Gvfa Gdv+ G+   +
   MMETSP1137-20121227|79_1   2 VVGGGDSACEEALYLTRYASKvYQLVYTSDFDTASQVMQERVKAN-SDVEVIYSTKVADVLPMTE-SVSGESPIRALLLEDVNTGDRTELPVR---------GLFYAIGNVPNT---RAXXVEVDRLNYIVTHKDgVATSVDGVFAAGDVMDGGGAAL 145
                677777777777777777777335667666666665555555443.3467777777777776544.566777777777777777777777765.........467899*99995...566889999999988765379**************987655 PP

>> TIGR03169  Nterm_to_SelD: pyridine nucleotide-disulfide oxidoreductase family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   0.0   1.9e-05    0.0056     149     281 ..       1     138 [.       1     147 [. 0.84
   2 ?   -2.4   0.0       1.5   4.4e+02     110     141 ..     148     179 ..     138     193 .. 0.67

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 1.9e-05
  TIGR03169 149 avvGgGaagvElalalrkrlkkrglk.aevslaseakllqalsakvrklvkrllakrgievlekeevtevede.......alllaegetleadavllatgakapawLaesglsldedGflavkktLqslshpevFaaGDca 281
                avvGgG  + E al l++   k  +   + ++ ++++++q+   k+++ v+ + + +  +vl  +e  ++e+         + ++++++l++   + a+g+ + +  ++  +++d+   + ++k    +s + vFaaGD++
   MMETSP1137-20121227|79_1   1 AVVGGGDSACEEALYLTRYASKVYQLvYTSDFDTASQVMQE-RVKANSDVEVIYSTKVADVLPMTESVSGESPirallleDVNTGDRTELPVRGLFYAIGNVPNT--RAXXVEVDRLNYIVTHKDGVATSVDGVFAAGDVM 138
                69*************99888887766244444466666655.566788888888888888888888888886589999989999******************997..78899999999*********************96 PP

  == domain 2    score: -2.4 bits;  conditional E-value: 1.5
  TIGR03169 110 sevegaadkavpvKPleellaaweellekaka 141
                ++  +++  av vKP   +++a ee  e+a+a
   MMETSP1137-20121227|79_1 148 ERYLAEKGLAVQVKPEPAMVEAAEEAAEEASA 179
                34446667788888877777777777776644 PP

>> TIGR01317  GOGAT_sm_gam: glutamate synthase, NADH/NADPH, small subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   0.0     2e-05     0.006     419     456 ..     103     140 ..      76     186 .. 0.88

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 2e-05
  TIGR01317 419 llddlgvdkdergnikaeldesetsidGvfaaGdarrG 456
                +  +  v+ d+ + i +++d   ts+dGvfaaGd+  G
   MMETSP1137-20121227|79_1 103 NTRAXXVEVDRLNYIVTHKDGVATSVDGVFAAGDVMDG 140
                5567788999999*********************9876 PP

>> TIGR04018  Bthiol_YpdA: putative bacillithiol system oxidoreductase, YpdA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.3   0.0     4e-05     0.012     156     292 ..       1     141 [.       1     155 [. 0.69

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 4e-05
  TIGR04018 156 vvvGgknsavdaalelyrkgaevtlvvrgeels.......ekvkyWvkpdlenrikegkikalfesevkeieeesvtletp.egeveeiendfvlaltGyrpdlelleklgveleedekipvydeetmEtnveglylaGvvaagl 292
                +vvGg +sa++ al l+r  ++v  +v  ++++       e+vk     ++    k   +  + es   e   +++ le+  +g+ +e++   ++  +G  p+++   +  ve+++  +  v++++ + t+v+g++ aG v+ g 
   MMETSP1137-20121227|79_1   1 AVVGGGDSACEEALYLTRYASKVYQLVYTSDFDtasqvmqERVKANSDVEVIYSTKVADVLPMTESVSGESPIRALLLEDVnTGDRTELPVRGLFYAIGNVPNTR---AXXVEVDRL-NYIVTHKDGVATSVDGVFAAGDVMDGG 141
                59********************9866666555400000003333333333333333333333334433444445666776658999999*************986...678999988.5778888999***********998875 PP

>> TIGR02187  GlrX_arch: glutaredoxin-like domain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   0.00016     0.046     136     214 ..     207     291 ..     198     293 .. 0.54

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 0.00016
  TIGR02187 136 vkievfvtptCpYCPrAvllAhklAlead...kilgevieAlEfqdlaekyqvssvPkivinkdve...efvGaqpeeeFleavl 214
                v +  fv ptC+ C   + +  +l  +      ++   ++     ++a +  v + P++ + +  e   ++ G++p  +++ a++
   MMETSP1137-20121227|79_1 207 VALVKFVSPTCGACRALAPMLTRLLKKEFapdAVTVLEVDVDSQVEWAKEAXVEGTPTVQVYRAGElaqSIRGVEPRATYISALK 291
                4555566666666655554444433222122244444555556666666666666666666665554445566666666666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (301 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       181  (0.0441248); expected 82.0 (0.02)
Passed bias filter:                      126  (0.0307167); expected 82.0 (0.02)
Passed Vit filter:                        24  (0.0058508); expected 4.1 (0.001)
Passed Fwd filter:                        14  (0.00341297); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.42u 0.21s 00:00:00.63 Elapsed: 00:00:00.74
# Mc/sec: 536.87
//
Query:       MMETSP1137-20121227|80_1  [L=397]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (397 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        75  (0.0182838); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.24s 00:00:00.56 Elapsed: 00:00:00.48
# Mc/sec: 1091.66
//
Query:       MMETSP1137-20121227|83_1  [L=385]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (385 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        61  (0.0148708); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.21s 00:00:00.50 Elapsed: 00:00:00.56
# Mc/sec: 907.43
//
Query:       MMETSP1137-20121227|84_1  [L=244]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (244 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        94  (0.0229157); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.24s 00:00:00.47 Elapsed: 00:00:00.51
# Mc/sec: 631.48
//
Query:       MMETSP1137-20121227|85_1  [L=454]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.2e-42  139.4   0.0    4.9e-05   21.1   0.0   10.9 11  TIGR00756 PPR: pentatricopeptide repeat domain


Domain annotation for each model (and alignments):
>> TIGR00756  PPR: pentatricopeptide repeat domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.0     0.016        64      12      25 ..      62      75 ..      57      75 .. 0.85
   2 !    6.8   0.0   0.00042       1.7       3      32 ..      83     112 ..      81     115 .. 0.87
   3 !    6.6   0.0   0.00049         2       2      34 ..     117     149 ..     116     150 .. 0.87
   4 !   19.5   0.0   3.9e-08   0.00016       2      34 ..     152     184 ..     151     185 .. 0.97
   5 !   14.6   0.0   1.4e-06    0.0059       1      28 [.     186     213 ..     186     214 .. 0.94
   6 !   14.0   0.0   2.2e-06     0.009       1      28 [.     219     246 ..     219     249 .. 0.95
   7 !   21.1   0.0   1.2e-08   4.9e-05       3      35 .]     253     285 ..     251     285 .. 0.97
   8 !   20.0   0.0   2.7e-08   0.00011       2      34 ..     287     319 ..     286     320 .. 0.96
   9 ?    1.1   0.0     0.027   1.1e+02       1      19 [.     321     339 ..     321     341 .. 0.89
  10 !   16.6   0.0   3.3e-07    0.0014       3      26 ..     363     386 ..     363     390 .. 0.95
  11 ?    0.7   0.0     0.036   1.5e+02       6      24 ..     400     418 ..     397     420 .. 0.87

  Alignments for each domain:
  == domain 1    score: 1.9 bits;  conditional E-value: 0.016
  TIGR00756 12 kagrveeAlelfde 25
                ++r+ eAl lf+e
   MMETSP1137-20121227|85_1 62 SEKRWGEALALFEE 75
               689*********97 PP

  == domain 2    score: 6.8 bits;  conditional E-value: 0.00042
  TIGR00756   3 yntlisglckagrveeAlelfdeMkergiv 32 
                y   i++++ +g+   Al  +++M+++g+ 
   MMETSP1137-20121227|85_1  83 YLQAIRAHSGRGDGPQALATLQRMQSNGFN 112
                6667999999******************96 PP

  == domain 3    score: 6.6 bits;  conditional E-value: 0.00049
  TIGR00756   2 tyntlisglckagrveeAlelfdeMkergivPd 34 
                +y++ i++++ a ++  Al+l+ +M ++giv d
   MMETSP1137-20121227|85_1 117 VYTATIRACATALHWPIALSLLADMSSDGIVAD 149
                57777888888888999**************98 PP

  == domain 4    score: 19.5 bits;  conditional E-value: 3.9e-08
  TIGR00756   2 tyntlisglckagrveeAlelfdeMkergivPd 34 
                +yn+ +s++ ++g++eeAl l ++M+++g++Pd
   MMETSP1137-20121227|85_1 152 CYNAALSACDRSGQWEEALPLVQQMQDEGLRPD 184
                8*******************************9 PP

  == domain 5    score: 14.6 bits;  conditional E-value: 1.4e-06
  TIGR00756   1 vtyntlisglckagrveeAlelfdeMke 28 
                vt ntlis+ ++ag++   l+l+++M e
   MMETSP1137-20121227|85_1 186 VTLNTLISAASRAGQWQVSLRLLESMDE 213
                799***********************65 PP

  == domain 6    score: 14.0 bits;  conditional E-value: 2.2e-06
  TIGR00756   1 vtyntlisglckagrveeAlelfdeMke 28 
                +ty + + ++ + g+++ Al lf++M++
   MMETSP1137-20121227|85_1 219 YTYASALAACERGGQPKRALALFQQMQA 246
                79************************96 PP

  == domain 7    score: 21.1 bits;  conditional E-value: 1.2e-08
  TIGR00756   3 yntlisglckagrveeAlelfdeMkergivPda 35 
                yn+ i++++ +  +  Al+l+ +M+++g+vPd+
   MMETSP1137-20121227|85_1 253 YNAAIRACASESLWPVALSLLADMQSDGLVPDV 285
                9******************************96 PP

  == domain 8    score: 20.0 bits;  conditional E-value: 2.7e-08
  TIGR00756   2 tyntlisglckagrveeAlelfdeMkergivPd 34 
                +yn+ + ++ + g++ee+  l++eM ++++ P+
   MMETSP1137-20121227|85_1 287 SYNAAMVACERVGEWEEVDALLREMSDSNVAPT 319
                8*****************************997 PP

  == domain 9    score: 1.1 bits;  conditional E-value: 0.027
  TIGR00756   1 vtyntlisglckagrveeA 19 
                v++ t +s++ +a+r+  A
   MMETSP1137-20121227|85_1 321 VSFHTALSACRRAKRPTRA 339
                6899***********9877 PP

  == domain 10    score: 16.6 bits;  conditional E-value: 3.3e-07
  TIGR00756   3 yntlisglckagrveeAlelfdeM 26 
                y+t +++l++ g+++ A+ +f++M
   MMETSP1137-20121227|85_1 363 YTTAMNALSRGGCFRAAVAVFERM 386
                9*********************** PP

  == domain 11    score: 0.7 bits;  conditional E-value: 0.036
  TIGR00756   6 lisglckagrveeAlelfd 24 
                 +++++  g ++ Al l +
   MMETSP1137-20121227|85_1 400 ALRACADGGLWRAALGLIE 418
                689***********99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (454 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        79  (0.0192589); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.24s 00:00:00.58 Elapsed: 00:00:00.81
# Mc/sec: 739.79
//
Query:       MMETSP1137-20121227|86_1  [L=75]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.1e-20   69.1   0.6    1.1e-19   68.9   0.4    1.0  1  TIGR02349 DnaJ_bact: chaperone protein DnaJ
    1.8e-14   50.9   0.5    2.1e-14   50.7   0.4    1.0  1  TIGR03835 termin_org_DnaJ: terminal organelle assembly protein TopJ


Domain annotation for each model (and alignments):
>> TIGR02349  DnaJ_bact: chaperone protein DnaJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.9   0.4   5.1e-23   1.1e-19       2      64 ..       9      70 ..       8      74 .. 0.97

  Alignments for each domain:
  == domain 1    score: 68.9 bits;  conditional E-value: 5.1e-23
  TIGR02349  2 YYeiLgvskdAseeeikkAYrklakkyHPDrnkgekeaeekfkeineAyevLsdeekraqYDq 64
               +Ye Lgv  dA++++ikkA+ ++a k HPD+n+ ++ ae+ fk++++A+ vLsd   r+ YD 
   MMETSP1137-20121227|86_1  9 HYEALGVRVDADAADIKKAFHRMALKLHPDKNQ-QELAEDAFKRVQHAHAVLSDGAARRLYDM 70
               6********************************.999*************************6 PP

>> TIGR03835  termin_org_DnaJ: terminal organelle assembly protein TopJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.7   0.4     1e-17   2.1e-14       4      64 ..       9      69 ..       6      71 .. 0.96

  Alignments for each domain:
  == domain 1    score: 50.7 bits;  conditional E-value: 1e-17
  TIGR03835  4 yyevLgidrDadeqeikkafrkLakkyhPDrnkaadaakifaeineandvLsnPkkraryD 64
               +ye Lg+  Dad  +ikkaf ++a k hPD+n++  a++ f+ +  a+ vLs+   r  yD
   MMETSP1137-20121227|86_1  9 HYEALGVRVDADAADIKKAFHRMALKLHPDKNQQELAEDAFKRVQHAHAVLSDGAARRLYD 69
               7*******************************************************99999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (75 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       163  (0.0397367); expected 82.0 (0.02)
Passed bias filter:                      134  (0.032667); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.18u 0.20s 00:00:00.38 Elapsed: 00:00:00.46
# Mc/sec: 215.20
//
Query:       MMETSP1137-20121227|88_1  [L=159]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (159 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        79  (0.0192589); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.18s 00:00:00.36 Elapsed: 00:00:00.55
# Mc/sec: 381.57
//
Query:       MMETSP1137-20121227|89_1  [L=228]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (228 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        65  (0.0158459); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.19s 00:00:00.41 Elapsed: 00:00:00.44
# Mc/sec: 683.94
//
Query:       MMETSP1137-20121227|90_1  [L=324]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.011   12.9   0.0      0.048   10.8   0.0    1.8  2  TIGR01762 chlorin-enz: chlorinating enzymes
      0.023   11.8   0.0      0.036   11.2   0.0    1.3  1  TIGR02408 ectoine_ThpD: ectoine hydroxylase


Domain annotation for each model (and alignments):
>> TIGR01762  chlorin-enz: chlorinating enzymes
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0     0.072   1.5e+02      93     120 ..     190     218 ..     153     224 .. 0.72
   2 ?   10.8   0.0   2.4e-05     0.048     218     251 ..     249     283 ..     243     293 .. 0.83

  Alignments for each domain:
  == domain 1    score: -0.7 bits;  conditional E-value: 0.072
  TIGR01762  93 teffpkypGdeG.tdwhqadtfaeasGkp 120
                 + f k pG    t wh+  ++   +Gk 
   MMETSP1137-20121227|90_1 190 DQLFVKEPGTSApTPWHNDTSYWPLEGKQ 218
                467889999764399***99999999985 PP

  == domain 2    score: 10.8 bits;  conditional E-value: 2.4e-05
  TIGR01762 218 fiiftsrlmhaslpnsses.kirlGyaaryvpsdv 251
                ++if s  mh+   nss++ + r Gya+r+   dv
   MMETSP1137-20121227|90_1 249 ILIFYSATMHGGPGNSSSKgQRRRGYATRWCGDDV 283
                689********999887651699*******98776 PP

>> TIGR02408  ectoine_ThpD: ectoine hydroxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   1.8e-05     0.036      12     170 ..      89     243 ..      81     248 .. 0.72

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 1.8e-05
  TIGR02408  12 eaagalaakdlqsyerdGflvlenlvaddevaalraelerliadpavdrdeeaiveeqsnavrsifevhllsevlarlvrdervvnaarqilGs.dvyvhqsrinvkpGfkgtgfywhsdfetwhaedGlpalravsvsialt.enyetnGslmvvpGshk 170
                +a+  ++  d  + e+dG +vl + + + +v +lra  er  ++p    de+a  + +++         +  + +   vr    ++ a + +Gs    +   ++ vk   ++    wh d   w  e          +si l+ +  +   +l  v Gshk
   MMETSP1137-20121227|90_1  89 DAQSLVSHADAAQLEEDGAIVLRDAFPNVWVQTLRAAAERNLSNPGPLCDEHARAQGSGGRFHDDQFLWRRHPEFEAYVRRSGAAQIAARAMGSrSANILYDQLFVKEPGTSAPTPWHNDTSYWPLEGK------QICSIWLAlDMVPAGRGLCYVRGSHK 243
                5667788999999*********************************99999998888888777654455555556666677777776666677624567777777765556667789999999988753......23455444133344445666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (324 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.26u 0.16s 00:00:00.42 Elapsed: 00:00:00.57
# Mc/sec: 737.32
//
Query:       MMETSP1137-20121227|91_1  [L=141]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.8e-25   86.6   0.1      1e-24   85.5   0.1    1.5  1  TIGR00401 msrA: peptide-methionine (S)-S-oxide reductase


Domain annotation for each model (and alignments):
>> TIGR00401  msrA: peptide-methionine (S)-S-oxide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.5   0.1   2.5e-28     1e-24      13     147 ..      19     138 ..      12     140 .. 0.87

  Alignments for each domain:
  == domain 1    score: 85.5 bits;  conditional E-value: 2.5e-28
  TIGR00401  13 veklfrkidgvektkvGylngktenPtyeevCsgdtghaevvkveydpkvvsleeLldvffevidPttanrqgnDkGtqyrsgiyalsdedekaaeaskerlqesakykkkivteiekaenfyeaeeyhqqylkk 147
                 +  f++++gv++ +vGy++g+t++Pty++vC+gd gh+e++++e+dp+v+s+eeL+ ++f+          g     qy s+++a+sde+ ++a+++ ++ ++     ++i   + + +++++ae+yhq+yl+k
   MMETSP1137-20121227|91_1  19 PQARFDRVPGVVSSSVGYVGGTTPSPTYRSVCAGD-GHTEALRLEFDPNVISYEELMRLYFSEAY-------GGRSKPQYMSAVWAQSDEQAATANKIARASAK-----EDI--PVLATSQWHDAEDYHQKYLSK 138
                5778******************************8.89***********************8754.......4444569************9999998887666.....344..3567789************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (141 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        67  (0.0163335); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.18u 0.26s 00:00:00.44 Elapsed: 00:00:00.50
# Mc/sec: 372.21
//
Query:       MMETSP1137-20121227|92_1  [L=631]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0055   13.9   0.3     0.0098   13.1   0.2    1.3  1  TIGR02349 DnaJ_bact: chaperone protein DnaJ


Domain annotation for each model (and alignments):
>> TIGR02349  DnaJ_bact: chaperone protein DnaJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.1   0.2   2.4e-06    0.0098      12      51 ..      69     113 ..      66     162 .. 0.80

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 2.4e-06
  TIGR02349  12 AseeeikkAYrklakkyHPDrnkg.....ekeaeekfkeineAye 51 
                 +++e+ kAY++ + + HPDr +      + eaee +k+ ++Ay 
   MMETSP1137-20121227|92_1  69 ITHSEVSKAYKRASLRLHPDRMRRrdvavRLEAEEVLKQLTQAYS 113
                5789*****************987556667799999999999994 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (631 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        99  (0.0241346); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.22s 00:00:00.64 Elapsed: 00:00:00.47
# Mc/sec: 1772.02
//
Query:       MMETSP1137-20121227|93_1  [L=545]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (545 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        81  (0.0197465); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.22s 00:00:00.60 Elapsed: 00:00:00.53
# Mc/sec: 1357.25
//
Query:       MMETSP1137-20121227|95_1  [L=247]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (247 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       103  (0.0251097); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.23s 00:00:00.47 Elapsed: 00:00:00.53
# Mc/sec: 615.12
//
Query:       MMETSP1137-20121227|96_1  [L=590]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   2.6e-179  594.5   0.0   3.4e-179  594.2   0.0    1.1  1  TIGR02731 phytoene_desat: phytoene desaturase
    1.4e-72  242.9   0.0    6.8e-50  168.1   0.0    2.6  2  TIGR02732 zeta_caro_desat: carotene 7,8-desaturase
    9.5e-56  187.7   0.0    3.8e-55  185.7   0.0    1.9  1  TIGR03467 HpnE: squalene-associated FAD-dependent desaturase
    2.9e-12   43.7   0.0    4.5e-12   43.1   0.0    1.3  1  TIGR00562 proto_IX_ox: protoporphyrinogen oxidase
    1.1e-09   35.4   0.0    2.1e-08   31.1   0.0    2.2  2  TIGR02734 crtI_fam: phytoene desaturase
    1.3e-06   25.2   0.0    1.9e-05   21.3   0.0    2.1  2  TIGR02733 desat_CrtD: C-3',4' desaturase CrtD
    5.1e-06   23.6   0.2    8.2e-06   22.9   0.1    1.3  1  TIGR03197 MnmC_Cterm: tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain
    5.2e-06   23.3   0.0    8.5e-06   22.6   0.0    1.2  1  TIGR01316 gltA: glutamate synthase (NADPH), homotetrameric
    7.4e-06   22.9   0.1    1.2e-05   22.2   0.1    1.2  1  TIGR01317 GOGAT_sm_gam: glutamate synthase, NADH/NADPH, small subunit
    8.3e-06   22.5   0.0    1.3e-05   21.8   0.0    1.2  1  TIGR01318 gltD_gamma_fam: glutamate synthase, small subunit
    1.8e-05   20.2   0.0    2.5e-05   19.7   0.0    1.1  1  TIGR03315 Se_ygfK: putative selenate reductase, YgfK subunit
    0.00013   18.3   0.0     0.0002   17.7   0.0    1.1  1  TIGR03997 mycofact_OYE_2: mycofactocin system FadH/OYE family oxidoreductase 2
    0.00029   17.2   0.0       0.18    7.9   0.0    2.1  2  TIGR02374 nitri_red_nirB: nitrite reductase [NAD(P)H], large subunit
     0.0003   17.9   0.1     0.0003   17.9   0.1    1.6  2  TIGR00292 TIGR00292: thiazole biosynthesis enzyme
    0.00084   16.1   0.0       0.39    7.3   0.0    2.1  2  TIGR02730 carot_isom: carotene isomerase
     0.0033   14.1   0.1     0.0049   13.6   0.1    1.2  1  TIGR00275 TIGR00275: flavoprotein, HI0933 family
     0.0036   14.1   0.0     0.0057   13.5   0.0    1.3  1  TIGR00031 UDP-GALP_mutase: UDP-galactopyranose mutase
     0.0051   13.8   0.1     0.0083   13.1   0.1    1.3  1  TIGR02352 thiamin_ThiO: glycine oxidase ThiO
     0.0053   13.6   0.9       0.47    7.2   0.0    2.8  3  TIGR02023 BchP-ChlP: geranylgeranyl reductase
  ------ inclusion threshold ------
      0.035   11.1   0.1      0.056   10.4   0.1    1.3  1  TIGR01790 carotene-cycl: lycopene cyclase family protein
      0.036   10.9   0.0      0.053   10.4   0.0    1.2  1  TIGR01087 murD: UDP-N-acetylmuramoylalanine--D-glutamate ligase


Domain annotation for each model (and alignments):
>> TIGR02731  phytoene_desat: phytoene desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  594.2   0.0  1.7e-181  3.4e-179       1     451 [.      68     527 ..      68     529 .. 0.94

  Alignments for each domain:
  == domain 1    score: 594.2 bits;  conditional E-value: 1.7e-181
  TIGR02731   1 rvaiagaglaglsaakyladaghtpivleardvlggkvaawkdedgdwyetglhiffgaypnllqllkelniedrlqwkehslifaqpdkpgelsrfdv.pdlpaplnvvlailrnndmltweekikfalgllpaivrgqkyveeldkltlsewlkkqgvpervndevfiaaskalnfidpdelsatvvltalnrflqerygsklafldgapperlcqpivdyitsrggevrlnarlkeivlnedgsvkafaladlegkesfevtadayvsalavdilklllpkpwkeleffkkleglegvpvinvhlwfdrklttvdhllfsrsellsvyadmsetckeyadpdksmlelvlapak.......dwigrsdeeiieatlkeleklfpdelkadek............akllkskvvktprsvykatpgreklrpaqktpienfflagdytkqkylasmegavlsgklaaqa 451
                r+a+ g+gl+gl++akyladag  p v ear+vlggkv+aw+dedgdw+etglhiffgaypn+++l++el+iedrlqwk+h + fa+++kpge++ f++ p +pap+n+ lail n +mlt  ek+++   llp + +gq++++ +d+l++ ++++k g+pervn e+fia+ kal+fidpd+ls+tvvlta+nrf++e  gs+ afldg+ p+rlc p+v++i+++gg v +  +l  i ++ dg+v+a+ lad+e      v adayvsa++vd+lk l+p +w++++ff +l +leg+p +  +  + r       ll++     svyadms++c eya +d+smlelv+ap +       +wigrsdeei++a++ el++lfpde++ade+            a+l+k +vv+ prsvy atpgr+k+rp+q+tpi+nf lagd+t qkyl+smegavl gklaaq 
   MMETSP1137-20121227|96_1  68 RIAVIGGGLSGLACAKYLADAGFEPTVYEARNVLGGKVSAWQDEDGDWIETGLHIFFGAYPNMMNLFEELGIEDRLQWKDHRMTFAMREKPGEFTSFEFlPGVPAPFNMALAILTNTEMLTLAEKVQMVPALLPMLTEGQSFIDRQDELSVLQFMQKYGMPERVNREIFIAMGKALDFIDPDKLSMTVVLTAMNRFINEADGSQTAFLDGNQPDRLCAPMVEHIEAKGGRVLTGKPLEAILVDGDGAVDALRLADGE-----LVRADAYVSAMPVDVLKRLIPTEWSKMPFFVQLRELEGIPXVRPQAALRRW----S-LLLAL-AASSVYADMSTACAEYASEDASMLELVFAPCSpvagsdvNWIGRSDEEIVDAAMGELARLFPDEIAADERwpttgsqgtrgtARLRKFAVVRVPRSVYAATPGRNKYRPSQQTPIRNFVLAGDFTAQKYLGSMEGAVLGGKLAAQV 527
                789***********************************************************************************************7699**********************************************************************************************************************************************************9.....9****************************************9998876553....3.44443.3459*************************97444444458***************************97434444444445599************************************************************96 PP

>> TIGR02732  zeta_caro_desat: carotene 7,8-desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  168.1   0.0   3.5e-52   6.8e-50       1     320 [.      68     375 ..      68     380 .. 0.91
   2 !   71.9   0.0   5.3e-23     1e-20     348     474 .]     382     529 ..     375     529 .. 0.77

  Alignments for each domain:
  == domain 1    score: 168.1 bits;  conditional E-value: 3.5e-52
  TIGR02732   1 kvaivgaglaglatavelvdaghevelyesrsflggkvgswvdkdgnhiemglhvffgcyanlfkllkkvgaldnlllkehthlfv..nkggeikeldfrfavgapfnglkafft.teqlklvdklrnalalatspivrglvdydgalktirdldkisfaewflskggseaslkrmwdpiayalgfidcenisarcmltifalfaakteasvlrllkgspdkyltkpileyleakgtklylrhkvkeikfekssdgetrvteliiskaeekkvikadayvaacdvpgikkllpkewrkfeefdkikkleavpvatvqlrydgw 320
                ++a++g gl+gla+a  l+dag e  +ye+r+ lggkv +w+d+dg+ ie glh+ffg+y n+++l++ +g +d+l+ k+h  +f   +k ge  +++f   v apfn   a++t te l+l +k++   al   p++      +g    i   d++s  +++ + g  e+  + ++  +  al fid +++s   +lt ++ f   ++ s+  +l+g   + l  p++e++eakg+++ + + ++ i +    dg+  v  l ++++e    ++adayv+a  v  +k+l+p ew k+ +f ++++le++p +  q     w
   MMETSP1137-20121227|96_1  68 RIAVIGGGLSGLACAKYLADAGFEPTVYEARNVLGGKVSAWQDEDGDWIETGLHIFFGAYPNMMNLFEELGIEDRLQWKDHRMTFAmrEKPGEFTSFEFLPGVPAPFNMALAILTnTEMLTLAEKVQMVPAL--LPML-----TEGQ-SFIDRQDELSVLQFMQKYGMPERVNREIFIAMGKALDFIDPDKLSMTVVLTAMNRFINEADGSQTAFLDGNQPDRLCAPMVEHIEAKGGRVLTGKPLEAILV----DGDGAVDALRLADGE---LVRADAYVSAMPVDVLKRLIPTEWSKMPFFVQLRELEGIPXVRPQAALRRW 375
                79*******************************************************************************9998733689*****************888877648999*****9976655..4554.....3443.56777899***9999999999999999********************************************9999*******************99999988....677789999999875...899*************************************98877665555 PP

  == domain 2    score: 71.9 bits;  conditional E-value: 5.3e-23
  TIGR02732 348 adfscfadlalaspedyykegqgsllqlvltpgdp.......flkksneeivkrvdkqvkelfpsskelkllw................ssvvklaqslyreapgmdlfrpdqktpianfflagsytkqdyidsmegatlsgrkaaaail 474
                a  s +ad++ a  ++y  e   s+l+lv++p  p       ++ +s+eeiv     ++ +lfp     +  w                ++vv++++s+y  +pg++ +rp+q+tpi nf lag +t q y+ smega l g++aa+++l
   MMETSP1137-20121227|96_1 382 AASSVYADMSTA-CAEYASE-DASMLELVFAPCSPvagsdvnWIGRSDEEIVDAAMGELARLFPDEIAADERWpttgsqgtrgtarlrkFAVVRVPRSVYAATPGRNKYRPSQQTPIRNFVLAGDFTAQKYLGSMEGAVLGGKLAAQVLL 529
                667999999865.5667665.679******9976544444559*********************754333333222222211111111179*******************************************************9985 PP

>> TIGR03467  HpnE: squalene-associated FAD-dependent desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  185.7   0.0     2e-57   3.8e-55       1     429 [.      69     529 ..      69     530 .. 0.86

  Alignments for each domain:
  == domain 1    score: 185.7 bits;  conditional E-value: 2e-57
  TIGR03467   1 vvvvGgGlAGLaAAveLaraGvrvtllEarrqlGGRarsfedgslgetiDngqHvllgaytellallarvgaedrlql..erleltfldpegresrLrlsrl.paPlhlakgll.rakglsladklalarlllalkrerl...raaadetvaewLkakgqserlierlwepllvsaLNedperasaklaakVlrdsllakreasdlllprvdLselfvepaarylesrggevrlgtrvreleasaggiralve.aaeetlaadavvlAvpperaasllpe....edlaaklaalesspIttvhlrldrevk.....lpaplvglvgglaqWlfdrgelagee..gllavvvSaardledlereeladrivaelrrllpkv................aeakllkakvikekrAtFaatpglerlRPgartplpnlfLAGDwtatgyPATlEgAvrSGvqAAeavl 429
                ++v+GgGl+GLa+A  La+aG++ t++Ear+ lGG++++ +d++ +  i  g H+  gay ++++l + +g edrlq    r  +++ ++ g++ +++  ++ paP+++a + l + + l+la+k++++ +ll +  e       +++ +v + +++ g +er+ ++++  +  +    dp++ s+ ++   + + + ++++ s+  +   +  + + +p+++ +e++gg+v +g  ++++ ++++g+  +++ a++e + ada+v A+p +++++l+p+       + +l +le  p +     l r        ++  ++ +    a+++ ++  +  e      + v     ++  +++ee++d+++ el+rl+p +                  a+l k+ v++  r ++aatpg +  RP ++tp++n +LAGD+ta  y   +EgAv  G+ AA+ +l
   MMETSP1137-20121227|96_1  69 IAVIGGGLSGLACAKYLADAGFEPTVYEARNVLGGKVSAWQDEDGD-WIETGLHIFFGAYPNMMNLFEELGIEDRLQWkdHRMTFAMREKPGEFTSFEFLPGvPAPFNMALAILtNTEMLTLAEKVQMVPALLPMLTEGQsfiDRQDELSVLQFMQKYGMPERVNREIFIAMGKALDFIDPDKLSMTVVLTAMNR-FINEADGSQTAFLDGNQPDRLCAPMVEHIEAKGGRVLTGKPLEAILVDGDGAVDALRlADGELVRADAYVSAMPVDVLKRLIPTewskMPFFVQLRELEGIPXVRPQAALRRWSLllalaASSVYADMSTACAEYASEDASML-ELvfAPCSPVAGSDVNWIGRSDEEIVDAAMGELARLFPDEiaaderwpttgsqgtrGTARLRKFAVVRVPRSVYAATPGRNKYRPSQQTPIRNFVLAGDFTAQKYLGSMEGAVLGGKLAAQVLL 529
                68***********************************999999999.******************************85455667777777787899987666******99876157899**********9998888776578899999********************9999888889************9975.889999999999999999*****************************9988655555489999*********************98874555566666655555444444443222222266667778888888888776432.22235556667777788999*******************999**********9998889999**********************************************************9886 PP

>> TIGR00562  proto_IX_ox: protoporphyrinogen oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.1   0.0   2.3e-14   4.5e-12       4     174 ..      68     253 ..      65     268 .. 0.74

  Alignments for each domain:
  == domain 1    score: 43.1 bits;  conditional E-value: 2.3e-14
  TIGR00562   4 kvvvvGgGisGLciayalekerpdvelvlvEakdRvGGkiy.TrkesGyllEkGprtlleskegildllkdlGleavlvsidktdkrfvlkn...........kgklvpvPskiselvkflLlslgkklraglmleeirkks....pgkd.eSveefvrrrlGdevlen.liepllsGiYagDvskLSl 174
                 ++v+GgG+sGL+ a +l+    + e +++Ea++  GGk+   ++e+G  +E G + + +  + +++l  +lG+e+ l+  d     f + +            g   p  + ++ l ++++l+l +k++   +l  ++ ++      +d  Sv +f+++    e +++ +  ++ + +   D++kLS+
   MMETSP1137-20121227|96_1  68 RIAVIGGGLSGLACAKYLADA--GFEPTVYEARNVLGGKVSaWQDEDGDWIETGLHIFFGAYPNMMNLFEELGIEDRLQWKD-HRMTFAMREkpgeftsfeflPGVPAPFNMALAILTNTEMLTLAEKVQMVPALLPMLTEGqsfiDRQDeLSVLQFMQKYGMPERVNReIFIAMGKALDFIDPDKLSM 253
                589****************99..*****************96799**********************************944.4555665555566555333333334444667777778888888888776555555555544553344367777777655556666556666666666666666666 PP

>> TIGR02734  crtI_fam: phytoene desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.1   0.0   1.1e-10   2.1e-08       2      54 ..      70     123 ..      69     144 .. 0.82
   2 ?    1.8   0.0     0.086        17     219     274 ..     282     338 ..     277     351 .. 0.86

  Alignments for each domain:
  == domain 1    score: 31.1 bits;  conditional E-value: 1.1e-10
  TIGR02734   2 vViGaGlgGLAlAirLaaaGievtvlekrdkpGGRagvleed.GfrfDtGPtvi 54 
                 ViG+Gl+GLA+A  La aG e tv e+r+ +GG+ ++++++ G  + tG  ++
   MMETSP1137-20121227|96_1  70 AVIGGGLSGLACAKYLADAGFEPTVYEARNVLGGKVSAWQDEdGDWIETGLHIF 123
                7**************************************986587777776554 PP

  == domain 2    score: 1.8 bits;  conditional E-value: 0.086
  TIGR02734 219 alvealaklaedlggelrlnaeveeieteg.erataveledgerleadavvsnaDlv 274
                +l + +++++e  gg++ + ++ e i ++g + + a++l+dge ++ada vs+  + 
   MMETSP1137-20121227|96_1 282 RLCAPMVEHIEAKGGRVLTGKPLEAILVDGdGAVDALRLADGELVRADAYVSAMPVD 338
                67889********************99998678899****************97665 PP

>> TIGR02733  desat_CrtD: C-3',4' desaturase CrtD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3   0.0     1e-07   1.9e-05       3      44 ..      68     109 ..      66     115 .. 0.93
   2 ?    1.4   0.0      0.11        22     235     302 ..     284     347 ..     275     364 .. 0.79

  Alignments for each domain:
  == domain 1    score: 21.3 bits;  conditional E-value: 1e-07
  TIGR02733   3 svvviGaGiaGltaaallakrGlevtlleaaaqvGGCastfk 44 
                ++ viG+G++Gl++a  la  G+e t++ea +++GG  s+++
   MMETSP1137-20121227|96_1  68 RIAVIGGGLSGLACAKYLADAGFEPTVYEARNVLGGKVSAWQ 109
                699*********************************988876 PP

  == domain 2    score: 1.4 bits;  conditional E-value: 0.11
  TIGR02733 235 sdrlvealkkdggelllgqrveaietkeekaeakvvvdsrkkekeevkaddvvanlpaqsllelleea 302
                   +ve ++ +gg++l+g+ +eai ++ + a+       r  + e v+ad  v ++p+  l +l++++
   MMETSP1137-20121227|96_1 284 CAPMVEHIEAKGGRVLTGKPLEAILVDGDGAVDA----LRLADGELVRADAYVSAMPVDVLKRLIPTE 347
                55678999*****************987765443....344457789999999999999999999854 PP

>> TIGR03197  MnmC_Cterm: tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.9   0.1   4.2e-08   8.2e-06       1      39 [.      68     106 ..      68     109 .. 0.91

  Alignments for each domain:
  == domain 1    score: 22.9 bits;  conditional E-value: 4.2e-08
  TIGR03197   1 kvavIGaGiAgaalalsLarrGvqvtllekdeklaqgAS 39 
                ++avIG+G++g+a+a+ La +G++ t++e+++ l+ + S
   MMETSP1137-20121227|96_1  68 RIAVIGGGLSGLACAKYLADAGFEPTVYEARNVLGGKVS 106
                59*****************************98887766 PP

>> TIGR01316  gltA: glutamate synthase (NADPH), homotetrameric
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.6   0.0   4.3e-08   8.5e-06     133     172 ..      66     105 ..      40     108 .. 0.85

  Alignments for each domain:
  == domain 1    score: 22.6 bits;  conditional E-value: 4.3e-08
  TIGR01316 133 kkkvaviGaGpaGlavaselakkGhevtvfealhkpGGvl 172
                  ++aviG G +Gla+a+ la +G+e tv+ea +  GG +
   MMETSP1137-20121227|96_1  66 SPRIAVIGGGLSGLACAKYLADAGFEPTVYEARNVLGGKV 105
                569*****************************99988865 PP

>> TIGR01317  GOGAT_sm_gam: glutamate synthase, NADH/NADPH, small subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.2   0.1   6.3e-08   1.2e-05     139     182 ..      62     105 ..      50     107 .. 0.90

  Alignments for each domain:
  == domain 1    score: 22.2 bits;  conditional E-value: 6.3e-08
  TIGR01317 139 kkrtGkkvavvGsGPaGlaaadqlnraGhtvtvferedrvGGll 182
                ++r   ++av+G G +Gla+a+ l+ aG + tv+e  +  GG +
   MMETSP1137-20121227|96_1  62 RVRNSPRIAVIGGGLSGLACAKYLADAGFEPTVYEARNVLGGKV 105
                5677789******************************9999965 PP

>> TIGR01318  gltD_gamma_fam: glutamate synthase, small subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.8   0.0   6.9e-08   1.3e-05     138     179 ..      63     104 ..      40     107 .. 0.89

  Alignments for each domain:
  == domain 1    score: 21.8 bits;  conditional E-value: 6.9e-08
  TIGR01318 138 kktgkrvaviGaGpaGlacadvlaraGvkvvvfdrypeiGGl 179
                ++++ r+aviG+G +Glaca  la aG + +v++  + +GG 
   MMETSP1137-20121227|96_1  63 VRNSPRIAVIGGGLSGLACAKYLADAGFEPTVYEARNVLGGK 104
                46788*****************************99999995 PP

>> TIGR03315  Se_ygfK: putative selenate reductase, YgfK subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.0   1.3e-07   2.5e-05     527     577 ..      57     106 ..      39     109 .. 0.82

  Alignments for each domain:
  == domain 1    score: 19.7 bits;  conditional E-value: 1.3e-07
  TIGR03315 527 klekpqlksekhkvaviGaGPaGlsagyflaraGlpvtvfekkekagGvvk 577
                ++ k  ++ + +++aviG+G +Gl+ + +la aG + tv+e ++  gG v+
   MMETSP1137-20121227|96_1  57 RFAKERVR-NSPRIAVIGGGLSGLACAKYLADAGFEPTVYEARNVLGGKVS 106
                44454444.456*********************************999886 PP

>> TIGR03997  mycofact_OYE_2: mycofactocin system FadH/OYE family oxidoreductase 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.0     1e-06    0.0002     377     420 ..      64     107 ..      47     113 .. 0.88

  Alignments for each domain:
  == domain 1    score: 17.7 bits;  conditional E-value: 1e-06
  TIGR03997 377 rrrkkvlvvGgGPaGleaaataarrGhrvtllereeelGGqvkl 420
                r++ ++ v+GgG +Gl+ a+  a  G + t++e  + lGG+v +
   MMETSP1137-20121227|96_1  64 RNSPRIAVIGGGLSGLACAKYLADAGFEPTVYEARNVLGGKVSA 107
                44479************************************975 PP

>> TIGR02374  nitri_red_nirB: nitrite reductase [NAD(P)H], large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.9   0.0   0.00092      0.18     138     172 ..      64      98 ..      39     105 .. 0.74
   2 !    7.1   0.0    0.0016      0.32     181     236 ..     281     335 ..     270     343 .. 0.82

  Alignments for each domain:
  == domain 1    score: 7.9 bits;  conditional E-value: 0.00092
  TIGR02374 138 krtkkaaviGgGLLGLeaaraLknlGldvsviela 172
                +++ + aviGgGL GL  a+ L + G++  v e  
   MMETSP1137-20121227|96_1  64 RNSPRIAVIGGGLSGLACAKYLADAGFEPTVYEAR 98 
                334445*********************99998765 PP

  == domain 2    score: 7.1 bits;  conditional E-value: 0.0016
  TIGR02374 181 DqtagrlLqrelekkGltvlleketveivkesvekaerlrfkDGssleadlvvlaa 236
                D+  + +  +++e kG +vl++k  + i  ++  +++ lr++DG+ + ad  v a 
   MMETSP1137-20121227|96_1 281 DRLCAPM-VEHIEAKGGRVLTGKPLEAILVDGDGAVDALRLADGELVRADAYVSAM 335
                5555444.4689************9999999999****************988775 PP

>> TIGR00292  TIGR00292: thiazole biosynthesis enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.1   1.5e-06    0.0003      24      59 ..      69     104 ..      51     109 .. 0.89
   2 ?   -3.5   0.2       5.3     1e+03      54      65 ..     575     586 ..     571     589 .. 0.83

  Alignments for each domain:
  == domain 1    score: 17.9 bits;  conditional E-value: 1.5e-06
  TIGR00292  24 viivGaGpsGLtaayylakeglkvvvlerklaiGGG 59 
                ++++G+G sGL++a+yla +g+   v e +  +GG 
   MMETSP1137-20121227|96_1  69 IAVIGGGLSGLACAKYLADAGFEPTVYEARNVLGGK 104
                7899**************************999995 PP

  == domain 2    score: -3.5 bits;  conditional E-value: 5.3
  TIGR00292  54 laiGGGswgGGm 65 
                +a+GGG  gG  
   MMETSP1137-20121227|96_1 575 VAFGGGQQGGAN 586
                89*****99976 PP

>> TIGR02730  carot_isom: carotene isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.3   0.0     0.002      0.39       4      59 ..      70     126 ..      68     136 .. 0.83
   2 !    6.7   0.0     0.003      0.58     184     292 ..     241     344 ..     209     352 .. 0.75

  Alignments for each domain:
  == domain 1    score: 7.3 bits;  conditional E-value: 0.002
  TIGR02730   4 ivigsgigglvtatqlaakgakvlvlekylipggs.agyferegykfdvgaslifgf 59 
                 vig g+ gl +a  la  g    v e   + gg  + + + +g  ++ g  ++fg 
   MMETSP1137-20121227|96_1  70 AVIGGGLSGLACAKYLADAGFEPTVYEARNVLGGKvSAWQDEDGDWIETGLHIFFGA 126
                69************************9776666651555678899999999999984 PP

  == domain 2    score: 6.7 bits;  conditional E-value: 0.003
  TIGR02730 184 ellkfidiecfiwsvvpadltpminagmvlsdrhygginypkggvgeiaeklvkglekaggkirykarvtkiilendkavg.vkladgekirakrivsnatrwdtfgkll 292
                + l+fid +   ++vv +++  +in +         g n p     +++  +v+ +e +gg+++    +  i+++ d av  ++ladge +ra   vs     d +++l+
   MMETSP1137-20121227|96_1 241 KALDFIDPDKLSMTVVLTAMNRFINEADGSQTAFLDG-NQPD----RLCAPMVEHIEAKGGRVLTGKPLEAILVDGDGAVDaLRLADGELVRADAYVSA-MPVDVLKRLI 344
                5566666666666666666666666655433333333.4553....56778999*************************95379**********99984.5566666665 PP

>> TIGR00275  TIGR00275: flavoprotein, HI0933 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   0.1   2.5e-05    0.0049       1      38 [.      69     106 ..      69     108 .. 0.95

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 2.5e-05
  TIGR00275   1 viiiGgGaaGlmaAitaaeegakVlllEknkkigkKll 38 
                +++iGgG +Gl +A  +a +g + +++E+++ +g K++
   MMETSP1137-20121227|96_1  69 IAVIGGGLSGLACAKYLADAGFEPTVYEARNVLGGKVS 106
                68*********************************996 PP

>> TIGR00031  UDP-GALP_mutase: UDP-galactopyranose mutase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   0.0   2.9e-05    0.0057       5      72 ..      70     136 ..      68     167 .. 0.86

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 2.9e-05
  TIGR00031   5 iivGaGlsGivlaeilaklnkrvlvvekrnhiGGncydevdekgllvhkyGphifhtdnkkvldyisd 72 
                 ++G GlsG  +a+ la+ + +  v e rn +GG +   +de+g  + + G hif     ++++  ++
   MMETSP1137-20121227|96_1  70 AVIGGGLSGLACAKYLADAGFEPTVYEARNVLGGKVSAWQDEDGDWI-ETGLHIFFGAYPNMMNLFEE 136
                699********************************999999987555.57999999888777776665 PP

>> TIGR02352  thiamin_ThiO: glycine oxidase ThiO
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.1   0.1   4.3e-05    0.0083       1      31 [.      69      99 ..      69     108 .. 0.86

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 4.3e-05
  TIGR02352  1 vlviGgGviGlsvAveLakrghkvtllekde 31
               ++viGgG+ Gl+ A +La++g++ t+ e ++
   MMETSP1137-20121227|96_1 69 IAVIGGGLSGLACAKYLADAGFEPTVYEARN 99
               69************************99884 PP

>> TIGR02023  BchP-ChlP: geranylgeranyl reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.2   0.0    0.0024      0.47       2      28 ..      68      94 ..      67     103 .. 0.87
   2 ?   -0.6   0.0      0.58   1.1e+02     326     351 ..     217     242 ..     207     246 .. 0.87
   3 ?    3.3   0.0     0.038       7.4     263     312 ..     496     542 ..     480     550 .. 0.79

  Alignments for each domain:
  == domain 1    score: 7.2 bits;  conditional E-value: 0.0024
  TIGR02023  2 dvlviGggpsGaaaaetLakagievil 28
               +++viGgg sG a a+ La ag e  +
   MMETSP1137-20121227|96_1 68 RIAVIGGGLSGLACAKYLADAGFEPTV 94
               89*******************998655 PP

  == domain 2    score: -0.6 bits;  conditional E-value: 0.58
  TIGR02023 326 rvLrvlqkvyYrsdkrrekfvelCrd 351
                 vL+++qk    +  +re f+++ + 
   MMETSP1137-20121227|96_1 217 SVLQFMQKYGMPERVNREIFIAMGKA 242
                69********************9875 PP

  == domain 3    score: 3.3 bits;  conditional E-value: 0.038
  TIGR02023 263 servvLvGDaaGlvakasGeGiyyamksGklaaeaivealksgdatdLrk 312
                    vL+GD        s eG   a+ +Gklaa+ ++++ ++gd+++ ++
   MMETSP1137-20121227|96_1 496 IRNFVLAGDFTAQKYLGSMEG---AVLGGKLAAQVLLDRFQTGDDSHAHH 542
                455778888777777778888...899****************9877665 PP

>> TIGR01790  carotene-cycl: lycopene cyclase family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.1   0.00029     0.056       2      44 ..      69     109 ..      68     125 .. 0.83

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 0.00029
  TIGR01790   2 liviGgGlAglaiAlelakpglrvqlieaapklpfnntygvwe 44 
                ++viGgGl+gla A  la +g++  + ea + l+++   ++w+
   MMETSP1137-20121227|96_1  69 IAVIGGGLSGLACAKYLADAGFEPTVYEARNVLGGK--VSAWQ 109
                68********************99999988777765..35555 PP

>> TIGR01087  murD: UDP-N-acetylmuramoylalanine--D-glutamate ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   0.00027     0.053       1      36 [.      68     103 ..      68     119 .. 0.86

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 0.00027
  TIGR01087   1 kvlilGlgktGravaefLaekgaevtvtdlkkeeel 36 
                ++ ++G g +G a+a++La++g e tv+  ++    
   MMETSP1137-20121227|96_1  68 RIAVIGGGLSGLACAKYLADAGFEPTVYEARNVLGG 103
                589************************999887655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (590 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       142  (0.0346173); expected 82.0 (0.02)
Passed bias filter:                      136  (0.0331546); expected 82.0 (0.02)
Passed Vit filter:                        53  (0.0129205); expected 4.1 (0.001)
Passed Fwd filter:                        21  (0.00511945); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              21  [number of targets reported over threshold]
# CPU time: 0.56u 0.37s 00:00:00.93 Elapsed: 00:00:00.75
# Mc/sec: 1038.31
//
Query:       MMETSP1137-20121227|97_1  [L=327]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (327 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        62  (0.0151146); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.23s 00:00:00.46 Elapsed: 00:00:00.45
# Mc/sec: 959.12
//
Query:       MMETSP1137-20121227|98_1  [L=94]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (94 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        51  (0.012433); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.22s 00:00:00.31 Elapsed: 00:00:00.28
# Mc/sec: 443.11
//
Query:       MMETSP1137-20121227|99_1  [L=298]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (298 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       144  (0.0351048); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.23s 00:00:00.46 Elapsed: 00:00:00.56
# Mc/sec: 690.05
//
Query:       MMETSP1137-20121227|100_1  [L=32]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (32 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        24  (0.0058508); expected 82.0 (0.02)
Passed bias filter:                       23  (0.00560702); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.19s 00:00:00.30 Elapsed: 00:00:00.59
# Mc/sec: 71.59
//
Query:       MMETSP1137-20121227|101_1  [L=298]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (298 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        73  (0.0177962); expected 82.0 (0.02)
Passed bias filter:                       36  (0.00877621); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.22s 00:00:00.47 Elapsed: 00:00:00.40
# Mc/sec: 983.32
//
Query:       MMETSP1137-20121227|102_1  [L=90]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (90 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       142  (0.0346173); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.19s 00:00:00.34 Elapsed: 00:00:00.35
# Mc/sec: 339.40
//
Query:       MMETSP1137-20121227|103_1  [L=311]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (311 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        48  (0.0117016); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.13s 00:00:00.40 Elapsed: 00:00:00.81
# Mc/sec: 506.77
//
Query:       MMETSP1137-20121227|104_1  [L=175]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (175 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       109  (0.0265724); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.19s 00:00:00.40 Elapsed: 00:00:00.43
# Mc/sec: 537.16
//
Query:       MMETSP1137-20121227|106_1  [L=280]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.7e-85  283.2   1.5    5.4e-85  283.0   1.0    1.0  1  TIGR00112 proC: pyrroline-5-carboxylate reductase
    2.8e-05   21.3   0.1      4e-05   20.8   0.1    1.4  1  TIGR01505 tartro_sem_red: 2-hydroxy-3-oxopropionate reductase


Domain annotation for each model (and alignments):
>> TIGR00112  proC: pyrroline-5-carboxylate reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  283.0   1.0   2.6e-88   5.4e-85       1     263 []      17     276 ..      17     276 .. 0.96

  Alignments for each domain:
  == domain 1    score: 283.0 bits;  conditional E-value: 2.6e-88
  TIGR00112   1 iaiiGaGnmgeallsgllkkgakakkeilvierseeklaalakelgvevtsdaeeavkeadvvllavKPqdleevlaelkseektkeklliSilAGvtiekleqlleaekrvvRvmPNtaakvgagvtaiaassevseeqkelveellkavGkvveveeklldavtalsGSgPAfvflliealadagvklGLpreeakelaaqtlkGaaklleesgehpalLkdkVtsPgGtTiaglavLeekgvrsavieaveaavkrseeL 263
                ++++GaG m+ a+++gl+++g+ a ++ +++ +  +   + ++++gv+ +++++e+++ ad++++avKPq++++v++el    + +  l++Si+AG+t++ l ++l++ +r+vRvmPNt++ vg+ ++a++ ++++s++++++v +ll a+G++ +v+e ++davt+lsGSgPA+vf++ieal d+gv++GL+r  a+elaa+t+ Gaa+++ e+g+hp lLkd+VtsPgGtTiag+++Le++g+r+av++av aa++rs+eL
  MMETSP1137-20121227|106_1  17 VGFVGAGMMAGAMIRGLVRTGTCA-ADSILASDAYQPCLDALADVGVRGVKSNQEVANFADLLVIAVKPQMVPDVCRELSV--SPEPPLVVSIAAGITLASLGSWLPNGCRIVRVMPNTPCLVGELAAAYSPNEACSDADSATVGSLLGALGSAFKVKEVDMDAVTGLSGSGPAYVFQFIEALSDGGVRAGLTRPVAMELAAKTVRGAATMVLETGKHPGLLKDQVTSPGGTTIAGVHALEQGGLRAAVMNAVMAATERSKEL 276
                68******************9995.5666666666667777778999999999************************9998..56789*****************************************************************************************************************************************************************************98 PP

>> TIGR01505  tartro_sem_red: 2-hydroxy-3-oxopropionate reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   0.1     2e-08     4e-05       1      64 [.      16      83 ..      16     144 .. 0.86

  Alignments for each domain:
  == domain 1    score: 20.8 bits;  conditional E-value: 2e-08
  TIGR01505  1 kvgfiGlGimGkPmsknllkaGy....qlvvatleqealdellaaGaesaetakevvedadvivtmvP 64
               +vgf+G G+m   m + l+++G     ++ + +  q+ ld l+ +G   +++ +ev++ ad++v+ v 
  MMETSP1137-20121227|106_1 16 RVGFVGAGMMAGAMIRGLVRTGTcaadSILASDAYQPCLDALADVGVRGVKSNQEVANFADLLVIAVK 83
               59******************986333378899999**************************9998652 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (280 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       157  (0.038274); expected 82.0 (0.02)
Passed bias filter:                      115  (0.0280351); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.25u 0.15s 00:00:00.40 Elapsed: 00:00:00.56
# Mc/sec: 648.37
//
Query:       MMETSP1137-20121227|107_1  [L=476]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (476 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        79  (0.0192589); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.20s 00:00:00.54 Elapsed: 00:00:00.64
# Mc/sec: 981.67
//
Query:       MMETSP1137-20121227|108_1  [L=338]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (338 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       130  (0.0316919); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.15s 00:00:00.42 Elapsed: 00:00:00.68
# Mc/sec: 656.06
//
Query:       MMETSP1137-20121227|109_1  [L=225]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (225 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        32  (0.00780107); expected 82.0 (0.02)
Passed bias filter:                       30  (0.00731351); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.17s 00:00:00.38 Elapsed: 00:00:00.36
# Mc/sec: 824.93
//
Query:       MMETSP1137-20121227|110_1  [L=244]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.8e-21   73.7   0.0    1.3e-10   39.3   0.0    2.1  2  TIGR01830 3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase
    1.9e-17   61.6   0.0      2e-08   32.0   0.0    2.1  2  TIGR01829 AcAcCoA_reduct: acetoacetyl-CoA reductase
    1.9e-17   61.4   0.1      5e-08   30.5   0.0    2.1  2  TIGR02415 23BDH: acetoin reductases
    3.5e-16   57.0   0.1      3e-07   27.8   0.0    2.2  2  TIGR01963 PHB_DH: 3-hydroxybutyrate dehydrogenase
      9e-15   52.5   0.1    1.4e-07   29.0   0.0    2.1  2  TIGR01831 fabG_rel: putative 3-oxoacyl-(acyl-carrier-protein) reductase
    2.4e-14   51.3   0.1    1.3e-06   25.9   0.0    2.1  2  TIGR01832 kduD: 2-deoxy-D-gluconate 3-dehydrogenase
      1e-13   49.1   0.0    3.7e-06   24.4   0.0    2.1  2  TIGR03971 SDR_subfam_1: oxidoreductase, SDR family
    1.1e-12   45.7   0.1      4e-06   24.2   0.0    2.2  2  TIGR03206 benzo_BadH: 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase
    2.7e-06   24.9   0.0    3.2e-06   24.7   0.0    1.3  1  TIGR01289 LPOR: light-dependent protochlorophyllide reductase
    4.3e-05   19.9   0.1    0.00013   18.3   0.0    1.7  2  TIGR02632 RhaD_aldol-ADH: rhamnulose-1-phosphate aldolase/alcohol dehydrogenase
     0.0045   13.9   0.0       0.36    7.7   0.0    2.1  2  TIGR02685 pter_reduc_Leis: pteridine reductase
     0.0088   13.1   0.0      0.064   10.3   0.0    2.0  2  TIGR03325 BphB_TodD: cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase


Domain annotation for each model (and alignments):
>> TIGR01830  3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.5   0.0   4.3e-11   1.5e-08      48     140 ..      24     114 ..       3     123 .. 0.89
   2 !   39.3   0.0   3.7e-13   1.3e-10     146     195 ..     164     213 ..     157     231 .. 0.86

  Alignments for each domain:
  == domain 1    score: 32.5 bits;  conditional E-value: 4.3e-11
  TIGR01830  48 vkaaavkldvsdeeevkelveeveeelgeidilvnnAGitrDklllrmkeedwdevikvnLkgvfnvtkavlkkmikkrsGriinissvvgll 140
                 ++  v+ld+ ++e+++++ ++v++e+g++d+lvnnA i+  +      +++ +  i++n  g+ nv++a l  +     G++in++sv gll
  MMETSP1137-20121227|110_1  24 LNCPFVQLDLDSKESIEACAAQVSKEHGSLDLLVNNAAIAFKGSDPTPFSQQAQPTIHTNFFGTLNVCNAFLPILND--GGQVINVASVSGLL 114
                5677899*********************************9999888899999*****************9998866..9***********86 PP

  == domain 2    score: 39.3 bits;  conditional E-value: 3.7e-13
  TIGR01830 146 anYaasKaGligltkslakElasrnitvnavaPGfietdmteklsekvkk 195
                + Y +sK G+i+ltk la+ la r+i vn+ +PG+ +tdm ++   k+ +
  MMETSP1137-20121227|110_1 164 TCYGTSKLGVIALTKILARTLAGRQIAVNCFCPGYCATDMSSQRGTKTAA 213
                679*************************************9887666554 PP

>> TIGR01829  AcAcCoA_reduct: acetoacetyl-CoA reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.7   0.0   1.2e-09   4.3e-07      45     141 ..      19     113 ..       6     122 .. 0.90
   2 !   32.0   0.0     6e-11     2e-08     147     190 ..     163     206 ..     148     227 .. 0.89

  Alignments for each domain:
  == domain 1    score: 27.7 bits;  conditional E-value: 1.2e-09
  TIGR01829  45 kevegfdvavvkadvssfeeakaavakveaelGpvdvlvnnaGitrdavfkkmtkeqWeevidtnlnsvfnvtrpviegmlergfGriinissvnGl 141
                +++ + +  +v+ d+ s e+ +a  a+v++e G++d+lvnna i+         ++q +  i+tn+ + +nv +  +  + +   G++in++sv Gl
  MMETSP1137-20121227|110_1  19 MAAAQLNCPFVQLDLDSKESIEACAAQVSKEHGSLDLLVNNAAIAFKGSDPTPFSQQAQPTIHTNFFGTLNVCNAFLPILND--GGQVINVASVSGL 113
                55666778899**********************************99998888999999****************9998876..489********97 PP

  == domain 2    score: 32.0 bits;  conditional E-value: 6e-11
  TIGR01829 147 qanysaakaGliGftkalaqegakkgvtvnviaPGyiatemvka 190
                 + y ++k G+i +tk la+  a + ++vn  +PGy at+m ++
  MMETSP1137-20121227|110_1 163 NTCYGTSKLGVIALTKILARTLAGRQIAVNCFCPGYCATDMSSQ 206
                578**************************************876 PP

>> TIGR02415  23BDH: acetoin reductases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.1   0.0     4e-10   1.4e-07      45     141 ..      20     113 ..       3     126 .. 0.85
   2 !   30.5   0.0   1.5e-10     5e-08     148     198 ..     164     214 ..     147     234 .. 0.84

  Alignments for each domain:
  == domain 1    score: 29.1 bits;  conditional E-value: 4e-10
  TIGR02415  45 kekgtkavavkldvsdkseveeaveqaveklGeldvlvnnaGvalvtpileiteeeleklynvnvkgvlfGiqaaaekfkk.lkhkGkiinaasiagv 141
                 +++ +  +v+ld+ +k+++e+   q  ++ G+ld+lvnna +a+      +++  ++++ +  +++ +fG     ++f   l+ +G++in as++g 
  MMETSP1137-20121227|110_1  20 AAAQLNCPFVQLDLDSKESIEACAAQVSKEHGSLDLLVNNAAIAFK----GSDPTPFSQQAQPTIHTNFFGTLNVCNAFLPiLNDGGQVINVASVSGL 113
                556677889**********************************865....567888888888899999999999999998725677*********996 PP

  == domain 2    score: 30.5 bits;  conditional E-value: 1.5e-10
  TIGR02415 148 saysstkfavrgltqtaakeLakkgitvnayaPGivktemreeideklael 198
                + y ++k  v +lt+  a+ La + i+vn+++PG   t+m ++  +k+a  
  MMETSP1137-20121227|110_1 164 TCYGTSKLGVIALTKILARTLAGRQIAVNCFCPGYCATDMSSQRGTKTAAQ 214
                68**************************************99988777654 PP

>> TIGR01963  PHB_DH: 3-hydroxybutyrate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.8   0.0   8.7e-10     3e-07      44     141 ..      18     113 ..       4     120 .. 0.84
   2 !   27.2   0.0   1.3e-09   4.5e-07     148     189 ..     164     205 ..     155     221 .. 0.89

  Alignments for each domain:
  == domain 1    score: 27.8 bits;  conditional E-value: 8.7e-10
  TIGR01963  44 eleeaggevlalkadvtkeeeiadlieavaaefgsldiLvnnAGiqhvapieefpt.ekfekiiavnltsafhtiraalpimkkqgwGriiniasvhgl 141
                ++++a+ ++  +++d+ ++e+i+   ++v +e gsld+LvnnA i +    +  p+ ++ +  i+ n  +++ + +a lpi+++   G++in+asv gl
  MMETSP1137-20121227|110_1  18 RMAAAQLNCPFVQLDLDSKESIEACAAQVSKEHGSLDLLVNNAAIAFKGS-DPTPFsQQAQPTIHTNFFGTLNVCNAFLPILND--GGQVINVASVSGL 113
                566778889999*********************************87543.444441445668999***************975..699********98 PP

  == domain 2    score: 27.2 bits;  conditional E-value: 1.3e-09
  TIGR01963 148 saYvaaKHglvGltKvlAlEvAetgitanaicPgyvrtpLve 189
                + Y ++K g++ ltK+lA   A  +i +n+ cPgy  t + +
  MMETSP1137-20121227|110_1 164 TCYGTSKLGVIALTKILARTLAGRQIAVNCFCPGYCATDMSS 205
                57999*********************************9865 PP

>> TIGR01831  fabG_rel: putative 3-oxoacyl-(acyl-carrier-protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.5   0.0   7.5e-08   2.6e-05      43     141 ..      19     114 ..       7     122 .. 0.89
   2 !   29.0   0.0     4e-10   1.4e-07     148     189 ..     165     206 ..     157     230 .. 0.90

  Alignments for each domain:
  == domain 1    score: 21.5 bits;  conditional E-value: 7.5e-08
  TIGR01831  43 iraqggnarllkfdvadrvavrevleadiaehgayygvvlnagiardaafpalseedwdavietnldgfynvihplvmpmirarkggriitlasvsgvm 141
                + a   n+ ++++d+  ++++ +   +  +ehg+   +v na ia   + p+   ++ +  i+tn+ g  nv +   +p++   +gg++i +asvsg++
  MMETSP1137-20121227|110_1  19 MAAAQLNCPFVQLDLDSKESIEACAAQVSKEHGSLDLLVNNAAIAFKGSDPTPFSQQAQPTIHTNFFGTLNVCNA-FLPIL--NDGGQVINVASVSGLL 114
                6677789999********9999988888899*********************9999***************9876.57886..68************85 PP

  == domain 2    score: 29.0 bits;  conditional E-value: 4e-10
  TIGR01831 148 nysaakagligatkalavelakrkitvnciapglidtemvae 189
                 y ++k g+i  tk la  la r+i+vnc  pg   t+m ++
  MMETSP1137-20121227|110_1 165 CYGTSKLGVIALTKILARTLAGRQIAVNCFCPGYCATDMSSQ 206
                6999***********************************776 PP

>> TIGR01832  kduD: 2-deoxy-D-gluconate 3-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.3   0.0   2.4e-08   8.2e-06      52     141 ..      24     110 ..       5     120 .. 0.83
   2 !   25.9   0.0   3.8e-09   1.3e-06     150     191 ..     163     204 ..     155     216 .. 0.90

  Alignments for each domain:
  == domain 1    score: 23.3 bits;  conditional E-value: 2.4e-08
  TIGR01832  52 rkflslkadladeeaakalvdeaveeagkidilvnnaGii.rredavefsekdwddvlnvnlkavfllsqavakkllkqGrkgkiiniasl 141
                 +   +++dl ++e+++a  +++ +e g +d lvnna i  + +d   fs++  +  +++n+   + +++a+   +l++G  g++in+as+
  MMETSP1137-20121227|110_1  24 LNCPFVQLDLDSKESIEACAAQVSKEHGSLDLLVNNAAIAfKGSDPTPFSQQ-AQPTIHTNFFGTLNVCNAFL-PILNDG--GQVINVASV 110
                45567899******************************97256788899876.57788999999999998885.578888..9******98 PP

  == domain 2    score: 25.9 bits;  conditional E-value: 3.8e-09
  TIGR01832 150 vpsytasksavaGltkllanewakkginvnaiaPGyletnnt 191
                 ++y +sk +v+ ltk+la  +a ++i vn   PGy +t+ +
  MMETSP1137-20121227|110_1 163 NTCYGTSKLGVIALTKILARTLAGRQIAVNCFCPGYCATDMS 204
                5689***********************************975 PP

>> TIGR03971  SDR_subfam_1: oxidoreductase, SDR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.4   0.0   1.1e-08   3.7e-06      73     158 ..      32     114 ..      15     122 .. 0.88
   2 !   22.8   0.0   3.4e-08   1.2e-05     163     212 ..     163     212 ..     158     231 .. 0.85

  Alignments for each domain:
  == domain 1    score: 24.4 bits;  conditional E-value: 1.1e-08
  TIGR03971  73 dvrkleelravveegveefGrldvvvanaGvlsygrafelseeqWdtvldvnlkGvWktvkavvPalierknGGsiiivssvaglk 158
                d+ + e ++a  ++  +e G ld++v+na ++  g+     ++q + ++ +n+ G+ +++ a +P l   ++GG +i v+sv+gl 
  MMETSP1137-20121227|110_1  32 DLDSKESIEACAAQVSKEHGSLDLLVNNAAIAFKGSDPTPFSQQAQPTIHTNFFGTLNVCNAFLPIL---NDGGQVINVASVSGLL 114
                666677888888888999******************9999999**********************87...569**********986 PP

  == domain 2    score: 22.8 bits;  conditional E-value: 3.4e-08
  TIGR03971 163 lahyaaakhGlvgltktlanelaeygirvnsihPtsvdtamiepeamrel 212
                ++ y ++k G+++ltk la+ la  +i vn   P   +t m ++  ++ +
  MMETSP1137-20121227|110_1 163 NTCYGTSKLGVIALTKILARTLAGRQIAVNCFCPGYCATDMSSQRGTKTA 212
                5679*************************************986555544 PP

>> TIGR03206  benzo_BadH: 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.0   2.8e-07   9.6e-05      47     141 ..      19     111 ..       5     120 .. 0.80
   2 !   24.2   0.0   1.2e-08     4e-06     149     191 ..     163     205 ..     141     233 .. 0.84

  Alignments for each domain:
  == domain 1    score: 19.7 bits;  conditional E-value: 2.8e-07
  TIGR03206  47 irekggkaeavavditdrasvdaavaaaeealgpvdvlvnnagwdvlkpflktekaewerliainltgalymhhavlkgmverkagrivniasda 141
                ++++  ++  v+ d+ +++s++a+ a + +  g  d+lvnna     ++       + +  i  n+ g+l +  a l+ +     g+++n+as +
  MMETSP1137-20121227|110_1  19 MAAAQLNCPFVQLDLDSKESIEACAAQVSKEHGSLDLLVNNAAIAFKGSDPTPFSQQAQPTIHTNFFGTLNVCNAFLPILN--DGGQVINVASVS 111
                4555556667899*****************************98654444444455667799***************9765..579999999965 PP

  == domain 2    score: 24.2 bits;  conditional E-value: 1.2e-08
  TIGR03206 149 eavyaackgglvafsktlarelarhgitvnvvcpgptdtalle 191
                ++ y + k g++a++k lar la ++i+vn  cpg   t +  
  MMETSP1137-20121227|110_1 163 NTCYGTSKLGVIALTKILARTLAGRQIAVNCFCPGYCATDMSS 205
                568999*****************************98887654 PP

>> TIGR01289  LPOR: light-dependent protochlorophyllide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.7   0.0   9.4e-09   3.2e-06      26     131 ..       3     101 ..       1     204 [. 0.85

  Alignments for each domain:
  == domain 1    score: 24.7 bits;  conditional E-value: 9.4e-09
  TIGR01289  26 kgkwhvvmacrdlekaekaakslglpkdsytilkldlasldsvrkfveqfresgrsldalvcnaavylpllkeplfsadgyelsvatnhlghfllsnllledlkks 131
                +g + v++a rd e+   aa +l  p      ++ldl s +s+    +q  +   sld lv naa+ +   + p+  +++ + ++ tn +g + ++n +l  l++ 
  MMETSP1137-20121227|110_1   3 TG-FAVILAARDGERGRMAAAQLNCP-----FVQLDLDSKESIEACAAQVSKEHGSLDLLVNNAAIAFKGSD-PTPFSQQAQPTIHTNFFGTLNVCNAFLPILNDG 101
                56.899**********9999999776.....79***********************************8765.66666777899*************999887765 PP

>> TIGR02632  RhaD_aldol-ADH: rhamnulose-1-phosphate aldolase/alcohol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.0   3.8e-07   0.00013     447     533 ..      13      92 ..       2     121 .. 0.67
   2 ?   -1.0   0.0      0.26        90     563     597 ..     163     197 ..     143     225 .. 0.86

  Alignments for each domain:
  == domain 1    score: 18.3 bits;  conditional E-value: 3.8e-07
  TIGR02632 447 daeaaeavaaelvdkfGadkavalkldvtdeeavkaafaevalayGGvdivvnnaGiavskpleeteleeWdlnldilatGyflvar 533
                d+e+ +  aa+l+       +  ++ld+ ++e+++a  a+v+ ++G +d++vnna ia          ++ + ++  +  G   v++
  MMETSP1137-20121227|110_1  13 DGERGRMAAAQLN-------CPFVQLDLDSKESIEACAAQVSKEHGSLDLLVNNAAIAFKGSDPTPFSQQAQPTIHTNFFGTLNVCN 92 
                4444444444444.......23399********************************986544444466666666666666666555 PP

  == domain 2    score: -1.0 bits;  conditional E-value: 0.26
  TIGR02632 563 alaysaakaaeahlvrllaielaelgirvntvaPd 597
                ++ y ++k   + l ++la  la   i vn   P 
  MMETSP1137-20121227|110_1 163 NTCYGTSKLGVIALTKILARTLAGRQIAVNCFCPG 197
                678999999999**********9999***998885 PP

>> TIGR02685  pter_reduc_Leis: pteridine reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.0     0.012       4.1      61     102 ..      33      74 ..       3      89 .. 0.68
   2 !    7.7   0.0    0.0011      0.36     171     206 ..     164     199 ..     156     212 .. 0.87

  Alignments for each domain:
  == domain 1    score: 4.2 bits;  conditional E-value: 0.012
  TIGR02685  61 lsnsasllssceeiidacfrafGrcdvlvnnas.afy...ptpllr 102
                l   +s+ + c +      +++G  d+lvnna+ af    ptp+ +
  MMETSP1137-20121227|110_1  33 LDSKESIEA-CAA---QVSKEHGSLDLLVNNAAiAFKgsdPTPFSQ 74 
                444433332.222...234789*********973443444777655 PP

  == domain 2    score: 7.7 bits;  conditional E-value: 0.0011
  TIGR02685 171 slytmakealeGltrsaalelaslqirvngvapGls 206
                + y  +k  +  lt+  a  la +qi vn+ +pG  
  MMETSP1137-20121227|110_1 164 TCYGTSKLGVIALTKILARTLAGRQIAVNCFCPGYC 199
                67889999999***********************75 PP

>> TIGR03325  BphB_TodD: cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.0      0.18        62      65      89 ..      38      62 ..      27     115 .. 0.70
   2 !   10.3   0.0   0.00019     0.064     153     201 ..     164     213 ..     150     235 .. 0.79

  Alignments for each domain:
  == domain 1    score: 0.5 bits;  conditional E-value: 0.18
  TIGR03325 65 dhkeavarcveafgkldtlipnagi 89
               + + ++a+  ++ g ld l++na i
  MMETSP1137-20121227|110_1 38 SIEACAAQVSKEHGSLDLLVNNAAI 62
               3333444445567889999999887 PP

  == domain 2    score: 10.3 bits;  conditional E-value: 0.00019
  TIGR03325 153 alytaakhavvglvkelayelap.yvrvngvapgglstdlrglksldlad 201
                + y ++k  v+ l k la  la  ++ vn   pg  +td+   +  + a 
  MMETSP1137-20121227|110_1 164 TCYGTSKLGVIALTKILARTLAGrQIAVNCFCPGYCATDMSSQRGTKTAA 213
                57999***************98627**************97766555444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (244 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       110  (0.0268162); expected 82.0 (0.02)
Passed bias filter:                      107  (0.0260848); expected 82.0 (0.02)
Passed Vit filter:                        21  (0.00511945); expected 4.1 (0.001)
Passed Fwd filter:                        12  (0.0029254); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.30u 0.18s 00:00:00.48 Elapsed: 00:00:01.09
# Mc/sec: 295.46
//
Query:       MMETSP1137-20121227|111_1  [L=353]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (353 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       169  (0.0411994); expected 82.0 (0.02)
Passed bias filter:                      122  (0.0297416); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.20s 00:00:00.51 Elapsed: 00:00:00.75
# Mc/sec: 621.23
//
Query:       MMETSP1137-20121227|112_1  [L=145]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      2e-06   25.6   0.1    3.5e-06   24.8   0.1    1.5  1  TIGR03677 rpl7ae: 50S ribosomal protein L7Ae


Domain annotation for each model (and alignments):
>> TIGR03677  rpl7ae: 50S ribosomal protein L7Ae
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.8   0.1   8.5e-10   3.5e-06      15      88 ..      32     105 ..      21     141 .. 0.85

  Alignments for each domain:
  == domain 1    score: 24.8 bits;  conditional E-value: 8.5e-10
  TIGR03677  15 leavekaretGkikkGtnevtkaverGiaklvviaedvePeeivahlpalceekkipyvyvkkkedlGkaaGle 88 
                  ++++a     + +G  e  ka+++ +a+l v+++  + +     + alc e +i  + v+  ++lG+ aGl 
  MMETSP1137-20121227|112_1  32 KVVLKNAMVHDGLARGLHECAKALDKQQAQLCVLSASCNEPAYTKLVEALCAEHGINLMKVSDGKQLGEWAGLA 105
                445677777778899*********************************************************84 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (145 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       127  (0.0309605); expected 82.0 (0.02)
Passed bias filter:                      108  (0.0263286); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.18u 0.23s 00:00:00.41 Elapsed: 00:00:00.39
# Mc/sec: 490.73
//
Query:       MMETSP1137-20121227|113_1  [L=572]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (572 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        75  (0.0182838); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.20s 00:00:00.59 Elapsed: 00:00:00.55
# Mc/sec: 1372.69
//
Query:       MMETSP1137-20121227|114_1  [L=585]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (585 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        76  (0.0185275); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.20s 00:00:00.60 Elapsed: 00:00:00.41
# Mc/sec: 1883.26
//
Query:       MMETSP1137-20121227|115_1  [L=127]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (127 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        57  (0.0138957); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.15s 00:00:00.30 Elapsed: 00:00:00.32
# Mc/sec: 523.83
//
Query:       MMETSP1137-20121227|117_1  [L=271]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (271 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.10s 00:00:00.35 Elapsed: 00:00:00.47
# Mc/sec: 761.04
//
Query:       MMETSP1137-20121227|118_1  [L=305]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (305 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       140  (0.0341297); expected 82.0 (0.02)
Passed bias filter:                       97  (0.023647); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.21s 00:00:00.49 Elapsed: 00:00:00.47
# Mc/sec: 856.53
//
Query:       MMETSP1137-20121227|119_1  [L=102]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (102 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        65  (0.0158459); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.16s 00:00:00.31 Elapsed: 00:00:00.35
# Mc/sec: 384.65
//
Query:       MMETSP1137-20121227|120_1  [L=49]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (49 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        64  (0.0156021); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.19s 00:00:00.31 Elapsed: 00:00:00.44
# Mc/sec: 146.99
//
Query:       MMETSP1137-20121227|121_1  [L=374]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (374 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        43  (0.0104827); expected 82.0 (0.02)
Passed bias filter:                       37  (0.00901999); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.16s 00:00:00.44 Elapsed: 00:00:00.66
# Mc/sec: 747.94
//
Query:       MMETSP1137-20121227|122_1  [L=287]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (287 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        52  (0.0126767); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.17s 00:00:00.40 Elapsed: 00:00:00.35
# Mc/sec: 1082.31
//
Query:       MMETSP1137-20121227|124_1  [L=169]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (169 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        77  (0.0187713); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.16s 00:00:00.34 Elapsed: 00:00:00.31
# Mc/sec: 719.55
//
Query:       MMETSP1137-20121227|125_1  [L=540]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (540 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        76  (0.0185275); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.19s 00:00:00.53 Elapsed: 00:00:00.75
# Mc/sec: 950.32
//
Query:       MMETSP1137-20121227|126_1  [L=736]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.8e-91  303.5   0.0    7.5e-91  303.1   0.0    1.1  1  TIGR00308 TRM1: N2,N2-dimethylguanosine tRNA methyltransferase
     0.0012   16.2   0.1     0.0019   15.5   0.1    1.2  1  TIGR00406 prmA: ribosomal protein L11 methyltransferase
  ------ inclusion threshold ------
      0.012   13.0   0.0       0.02   12.2   0.0    1.3  1  TIGR03534 RF_mod_PrmC: protein-(glutamine-N5) methyltransferase, release factor-specific
      0.023   11.6   0.0      0.054   10.4   0.0    1.5  1  TIGR00536 hemK_fam: methyltransferase, HemK family


Domain annotation for each model (and alignments):
>> TIGR00308  TRM1: N2,N2-dimethylguanosine tRNA methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  303.1   0.0   7.3e-94   7.5e-91       1     370 [.      84     578 ..      84     582 .. 0.95

  Alignments for each domain:
  == domain 1    score: 303.1 bits;  conditional E-value: 7.3e-94
  TIGR00308   1 vkeGkveikvPkkeevfYnPrmkfnRDlsvvvikafdnlygkeck.......................................................................................................ieildalsasGiRaiRyakeiegvkevianDinPkavesiknnvklnsveniev.in.eDaaavlrkr....nrkfeviDiDPfGtpaPfvdsairaiakrglllvtatDtsaLcGsykkkclrkYganavktesthevaLRllvgfvkreaakYkkalepllslsidhYvRvylkvkrsakradkvleklgyllhcsrc..lhnkkvngiselkkr................ckecggeldlaGPlyvGelkdkefieevlkiaeeke..ystrkrveklLeliknelsaspgayslneiakvlklsvPPlkkvvegLkelGfeaslthaqpssiktdadldaivevlqk 370
                v+eG +++ +P + +vfYnP +  nRDlsv++++ f++ + ke+                                                                                                        + ++dalsasG+Ra+Rya e++g  +++anD+ P ave++k n + n+++++ v +n +Da+a+l+        +fev  +  +      +d   +a+a++g+l+vt+tD+++LcG y++ c +kYg++++k++++he+aLR+l+  +  +a +Y + ++plls  i++YvRv++++++s  +++ +  k  yl+ cs c  +  ++v ++++ + r                c +cg   ++ GPl+  +++d +f+ +vl + +  e  +s +k++ +lL l+++e+ ++p + +l  +a+ l+ + P l  v   L + G+++s+ h  p +iktda++  i +v++ 
  MMETSP1137-20121227|126_1  84 VQEGAASLFFPSRSGVFYNPPQIPNRDLSVLCLQQFTEDFRKEASerhaagaarreareregdstgvasvaaqageeaasagakassdaadgaapfdsssgtegregggqsvaprdttddmegaagddggnrgadgddvgedkenavkVRVIDALSASGLRAMRYALEVPGLDQIVANDLDPSAVEVMKANFERNGLSEPLVvSNvGDASAILHAAkrpvRARFEV-GLAVWAWG---IDLLGQAVAEGGMLMVTCTDLAVLCGAYPEACAAKYGSFPIKGKYCHESALRVLLACIDTHANRYGRYITPLLSVYINFYVRVFVRINTSKSMVKLSPTKRAYLYQCSGCdaFAFQPVARVTRDDARgnpkvsasigppvngaCAHCGKVHHVGGPLWTAPIHDDAFVRRVLSRLHRSEeaFSSHKQLIGLLTLVLEEIPDAPLFTNLSVLASSLRAQSPTLVAVFSALMRQGYRVSRSHTDPLAIKTDAPFSIIFDVMRT 578
                79***********************************999999889*******************************************************************************************************************************************************98755145369999999875675667775.44444444...555555569******************************************************************************************************9999**********99*********************************************987655556**********************99******************************************************86 PP

>> TIGR00406  prmA: ribosomal protein L11 methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.1   1.9e-06    0.0019     162     216 ..     233     289 ..     224     300 .. 0.82

  Alignments for each domain:
  == domain 1    score: 15.5 bits;  conditional E-value: 1.9e-06
  TIGR00406 162 kviDvGcGSGiLsi..aalklgaakvvavDiDplavesarkNlelNqvsdllqvkle 216
                +viD  + SG+ ++  a+   g +++va D+Dp ave  + N+e+N++s+ l v + 
  MMETSP1137-20121227|126_1 233 RVIDALSASGLRAMryALEVPGLDQIVANDLDPSAVEVMKANFERNGLSEPLVVSNV 289
                588888888987654388889***************************998877665 PP

>> TIGR03534  RF_mod_PrmC: protein-(glutamine-N5) methyltransferase, release factor-specific
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   1.9e-05      0.02      86     141 ..     228     286 ..     220     303 .. 0.81

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 1.9e-05
  TIGR03534  86 kkeklkvlDlgtGsGaIalalakelpda.kviavDiseeAlkvarkNakrlglke..ve 141
                ++ k++v+D  + sG  a+  a e+p + +++a D++++A++v ++N++r+gl+e  v 
  MMETSP1137-20121227|126_1 228 NAVKVRVIDALSASGLRAMRYALEVPGLdQIVANDLDPSAVEVMKANFERNGLSEplVV 286
                344789********************99568899*******************965433 PP

>> TIGR00536  hemK_fam: methyltransferase, HemK family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   5.2e-05     0.054     114     165 ..     230     282 ..     225     291 .. 0.87

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 5.2e-05
  TIGR00536 114 plkhilDlgtGsGcIalalAleipna.eviavDistdalavaeeNaeklklee 165
                 + +++D    sG  a+  Ale+p + ++ a D+ ++a++v ++N e+++l+e
  MMETSP1137-20121227|126_1 230 VKVRVIDALSASGLRAMRYALEVPGLdQIVANDLDPSAVEVMKANFERNGLSE 282
                557899999999*9**********874799********************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (736 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        98  (0.0238908); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.46u 0.21s 00:00:00.67 Elapsed: 00:00:00.71
# Mc/sec: 1368.23
//
Query:       MMETSP1137-20121227|127_1  [L=341]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (341 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        79  (0.0192589); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.14s 00:00:00.40 Elapsed: 00:00:00.40
# Mc/sec: 1125.21
//
Query:       MMETSP1137-20121227|129_1  [L=154]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (154 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       107  (0.0260848); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.14s 00:00:00.30 Elapsed: 00:00:00.35
# Mc/sec: 580.75
//
Query:       MMETSP1137-20121227|130_1  [L=68]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (68 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        33  (0.00804486); expected 82.0 (0.02)
Passed bias filter:                       32  (0.00780107); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.19s 00:00:00.30 Elapsed: 00:00:00.30
# Mc/sec: 299.18
//
Query:       MMETSP1137-20121227|131_1  [L=346]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (346 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        70  (0.0170648); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.18s 00:00:00.45 Elapsed: 00:00:00.52
# Mc/sec: 878.24
//
Query:       MMETSP1137-20121227|132_1  [L=374]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.4e-34  113.7   0.4    9.6e-34  112.9   0.3    1.4  1  TIGR02008 fdx_plant: ferredoxin [2Fe-2S]
    5.4e-12   43.0   0.2    7.6e-12   42.5   0.2    1.1  1  TIGR02160 PA_CoA_Oxy5: phenylacetate-CoA oxygenase/reductase, PaaK subunit
  ------ inclusion threshold ------
        4.9    4.4   9.2        6.8    4.0   6.4    1.1  1  TIGR03593 yidC_nterm: membrane protein insertase, YidC/Oxa1 family, N-terminal domain
          6    3.3  16.1        9.3    2.7  11.2    1.2  1  TIGR02927 SucB_Actino: 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase


Domain annotation for each model (and alignments):
>> TIGR02008  fdx_plant: ferredoxin [2Fe-2S]
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  112.9   0.3   9.4e-37   9.6e-34       2      97 .]     276     374 .]     275     374 .] 0.92

  Alignments for each domain:
  == domain 1    score: 112.9 bits;  conditional E-value: 9.4e-37
  TIGR02008   2 sykvklvnedgseetievpddeyildaaee.eG...idlpyscraGacstcaGkvkeGtvdqsdqsfldddqleegyvltcvayptsdvkiethkeeell 97 
                +++v+l ++dg e  +e+p d++ild+++e eG    +lpy+craG+cs+caGk+ +Gt d+s +sfl d+q ++g+vltc++ ptsd++i+th ee+l+
  MMETSP1137-20121227|132_1 276 TFTVTLKTPDG-ELXFECPPDQFILDQTDEeEGdgfAELPYACRAGSCSACAGKLISGTADNSAGSFLSDEQKAAGFVLTCTTKPTSDCVIQTHMEEDLF 374
                799********.99************985514444569************************************************************95 PP

>> TIGR02160  PA_CoA_Oxy5: phenylacetate-CoA oxygenase/reductase, PaaK subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.5   0.2   7.4e-15   7.6e-12     250     348 ..     262     365 ..     253     368 .. 0.84

  Alignments for each domain:
  == domain 1    score: 42.5 bits;  conditional E-value: 7.4e-15
  TIGR02160 250 evrrevedpegdqakvtvtldGlsreislsa.edesvldaalrarad....lPfackgGvcgtcrakvleGkvemeknyalepdevdaGyvltcqarPlsdklv 348
                ++ +  + p +d+ + tvtl   + e  +++  d+ +ld +  +  d    lP+ac++G c++c  k++ G  +      l  ++ +aG+vltc ++P sd ++
  MMETSP1137-20121227|132_1 262 APAPAAAAPSADKDTFTVTLKTPDGELXFECpPDQFILDQTDEEEGDgfaeLPYACRAGSCSACAGKLISGTADNSAGSFLSDEQKAAGFVLTCTTKPTSDCVI 365
                566777889999999999999988777776526899***998876544444************************************************99875 PP

>> TIGR03593  yidC_nterm: membrane protein insertase, YidC/Oxa1 family, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   6.4    0.0067       6.8      39      81 ..     226     284 ..     205     291 .. 0.36

  Alignments for each domain:
  == domain 1    score: 4.0 bits;  conditional E-value: 0.0067
  TIGR03593  39 aesqsaaaaaaasaaaaasadapsaaaaaaaaaaa................kritvktd 81 
                a  ++a+aa++a+a+a+++a  ++a+aaaa+a+aa                 ++t+kt+
  MMETSP1137-20121227|132_1 226 APPAVAPAAPSAPATAPPKAAPAPAPAAAAPAPAAaapapaaaapsadkdtFTVTLKTP 284
                33332222222222222222221111111111111122223322333443345555554 PP

>> TIGR02927  SucB_Actino: 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7  11.2    0.0091       9.3      81     130 ..     233     282 ..     218     296 .. 0.79

  Alignments for each domain:
  == domain 1    score: 2.7 bits;  conditional E-value: 0.0091
  TIGR02927  81 eagsedaeapaepeeepaeeppkeepkkaaeapaeaaaqaqgsgeateve 130
                 a+s++a+ap++ +++pa+ + +++p++aa apa aa++a+  + +  ++
  MMETSP1137-20121227|132_1 233 AAPSAPATAPPKAAPAPAPAAAAPAPAAAAPAPAAAAPSADKDTFTVTLK 282
                46888999999999999999999999999999998887777666555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (374 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        95  (0.0231594); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         9  (0.00219405); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.33u 0.16s 00:00:00.49 Elapsed: 00:00:00.41
# Mc/sec: 1204.00
//
Query:       MMETSP1137-20121227|134_1  [L=384]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (384 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       180  (0.043881); expected 82.0 (0.02)
Passed bias filter:                      129  (0.0314481); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.17s 00:00:00.48 Elapsed: 00:00:00.49
# Mc/sec: 1034.36
//
Query:       MMETSP1137-20121227|136_1  [L=117]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (117 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        60  (0.014627); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.16s 00:00:00.32 Elapsed: 00:00:00.30
# Mc/sec: 514.76
//
Query:       MMETSP1137-20121227|137_1  [L=418]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (418 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        67  (0.0163335); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.17s 00:00:00.46 Elapsed: 00:00:00.44
# Mc/sec: 1253.90
//
Query:       MMETSP1137-20121227|138_1  [L=420]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (420 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       183  (0.0446124); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.18s 00:00:00.48 Elapsed: 00:00:00.43
# Mc/sec: 1289.20
//
Query:       MMETSP1137-20121227|139_1  [L=320]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (320 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        69  (0.0168211); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.17s 00:00:00.40 Elapsed: 00:00:00.34
# Mc/sec: 1242.25
//
Query:       MMETSP1137-20121227|140_1  [L=127]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (127 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       149  (0.0363237); expected 82.0 (0.02)
Passed bias filter:                      113  (0.0275475); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.18s 00:00:00.36 Elapsed: 00:00:00.36
# Mc/sec: 465.63
//
Query:       MMETSP1137-20121227|141_1  [L=548]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (548 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        73  (0.0177962); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.13s 00:00:00.48 Elapsed: 00:00:00.48
# Mc/sec: 1506.88
//
Query:       MMETSP1137-20121227|144_1  [L=305]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (305 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        81  (0.0197465); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.15s 00:00:00.38 Elapsed: 00:00:00.47
# Mc/sec: 856.53
//
Query:       MMETSP1137-20121227|145_1  [L=498]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (498 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       119  (0.0290102); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.18s 00:00:00.52 Elapsed: 00:00:00.41
# Mc/sec: 1603.18
//
Query:       MMETSP1137-20121227|147_1  [L=50]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (50 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        86  (0.0209654); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.18s 00:00:00.31 Elapsed: 00:00:00.31
# Mc/sec: 212.89
//
Query:       MMETSP1137-20121227|148_1  [L=251]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (251 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        95  (0.0231594); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.14s 00:00:00.35 Elapsed: 00:00:00.36
# Mc/sec: 920.26
//
Query:       MMETSP1137-20121227|149_1  [L=163]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        8.6    3.0  10.2          6    3.5   6.0    1.4  1  TIGR03604 docking_ocin: bacteriocin biosynthesis docking scaffold, SagD family


Domain annotation for each model (and alignments):
>> TIGR03604  docking_ocin: bacteriocin biosynthesis docking scaffold, SagD family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   6.0    0.0015         6     209     305 ..       2      98 ..       1     105 [. 0.83

  Alignments for each domain:
  == domain 1    score: 3.5 bits;  conditional E-value: 0.0015
  TIGR03604 209 gadldpeeAlkkalaElaqllelladelredrekleniakdyrdvrdledhvllyadpkl.eerleflleeelplssleelerkdkkddleelldrlk 305
                +a+ld+ +A k+a+ E+  ++   ++e  e+++  e+   + r+ ++le++  l  +++  +e+++  l+ ++++++le++er++kkd+l +   +l+
  MMETSP1137-20121227|149_1   2 QAELDALRA-KRAVEEAERTWRKKEREEAERQKLIEEHLSKAREAQKLEKERRLITQAQHeKEEFSRILRVQREAEALEKMERSRKKDELSSHQSELQ 98 
                567777776.89**********99998888888888889999999***999998887765167888888*****************999998777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (163 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       520  (0.126767); expected 82.0 (0.02)
Passed bias filter:                      179  (0.0436373); expected 82.0 (0.02)
Passed Vit filter:                        23  (0.00560702); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.24u 0.26s 00:00:00.50 Elapsed: 00:00:00.46
# Mc/sec: 467.70
//
Query:       MMETSP1137-20121227|150_1  [L=713]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (713 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        58  (0.0141394); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.15s 00:00:00.57 Elapsed: 00:00:00.55
# Mc/sec: 1711.06
//
Query:       MMETSP1137-20121227|152_1  [L=344]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (344 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        65  (0.0158459); expected 82.0 (0.02)
Passed bias filter:                       41  (0.00999512); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.14s 00:00:00.39 Elapsed: 00:00:00.48
# Mc/sec: 945.92
//
Query:       MMETSP1137-20121227|154_1  [L=309]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (309 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        82  (0.0199902); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.13s 00:00:00.39 Elapsed: 00:00:00.40
# Mc/sec: 1019.62
//
Query:       MMETSP1137-20121227|155_1  [L=258]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (258 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.17s 00:00:00.40 Elapsed: 00:00:00.55
# Mc/sec: 619.15
//
Query:       MMETSP1137-20121227|156_1  [L=472]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (472 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       128  (0.0312043); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.13s 00:00:00.46 Elapsed: 00:00:00.52
# Mc/sec: 1198.05
//
Query:       MMETSP1137-20121227|157_1  [L=169]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (169 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       102  (0.0248659); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.17s 00:00:00.34 Elapsed: 00:00:00.78
# Mc/sec: 285.98
//
Query:       MMETSP1137-20121227|161_1  [L=231]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (231 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       148  (0.03608); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.13s 00:00:00.36 Elapsed: 00:00:00.33
# Mc/sec: 923.92
//
Query:       MMETSP1137-20121227|162_1  [L=109]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.4e-14   49.5   0.7    2.6e-13   48.1   0.5    1.6  1  TIGR00320 dfx_rbo: desulfoferrodoxin
    3.1e-10   38.3   0.3    4.4e-10   37.8   0.2    1.2  1  TIGR00332 neela_ferrous: desulfoferrodoxin ferrous iron-binding domain
  ------ inclusion threshold ------
      0.011   13.4   0.0      0.013   13.1   0.0    1.1  1  TIGR03656 IsdC: heme uptake protein IsdC


Domain annotation for each model (and alignments):
>> TIGR00320  dfx_rbo: desulfoferrodoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.1   0.5   1.9e-16   2.6e-13      46     123 ..      27     103 ..      16     105 .. 0.91

  Alignments for each domain:
  == domain 1    score: 48.1 bits;  conditional E-value: 1.9e-16
  TIGR00320  46 kekhvpviektgngvkvkvgsvahpmeekhyie..wieliaddvvyrkdlkpgdapeaeflvkadkvvareycnihglwk 123
                 +kh+pvi  ++++v v+vg   h m e+h+i   wie  +++v  + +lkp d p+ +    +  ++a e+cn+hg + 
  MMETSP1137-20121227|162_1  27 LKKHLPVIAVEDGKVTVEVG---HGMAEDHWITaiWIEDATGKVLEKVELKPTDTPKLVVETPSVSFTAYEHCNLHGTYA 103
                479************99887...9********7679*****************************************985 PP

>> TIGR00332  neela_ferrous: desulfoferrodoxin ferrous iron-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.8   0.2   3.2e-13   4.4e-10       5      99 ..      25     103 ..      21     107 .. 0.87

  Alignments for each domain:
  == domain 1    score: 37.8 bits;  conditional E-value: 3.2e-13
  TIGR00332   5 vkkekhvPvievkdregakvevkvkvgkeiphPmeeehfie..WielvagdlvlkkelvvgdaekaeklsvdapsfkveksskltalsyCnihGlWe 99 
                 k +kh Pvi     e +kv v+v  g    h m e+h+i   Wie  +g++  k el++ d++k +   v++ps       ++ta+ +Cn+hG + 
  MMETSP1137-20121227|162_1  25 AKLKKHLPVIA---VEDGKVTVEV--G----HGMAEDHWITaiWIEDATGKVLEKVELKPTDTPKLV---VETPS------VSFTAYEHCNLHGTYA 103
                5679******9...5677777777..6....*********777*******************99877...99999......589**********885 PP

>> TIGR03656  IsdC: heme uptake protein IsdC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   9.7e-06     0.013      62     103 ..      35      78 ..      29      96 .. 0.80

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 9.7e-06
  TIGR03656  62 ivknGkltvqlt..vnhskWitelkveengvkvvskdeaaDkRt 103
                 v++Gk+tv++   +   +Wit +++e+ + kv++k e + + t
  MMETSP1137-20121227|162_1  35 AVEDGKVTVEVGhgMAEDHWITAIWIEDATGKVLEKVELKPTDT 78 
                689999999985348999************99999987665555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (109 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        65  (0.0158459); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.15u 0.18s 00:00:00.32 Elapsed: 00:00:00.38
# Mc/sec: 378.60
//
Query:       MMETSP1137-20121227|163_1  [L=282]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (282 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        83  (0.020234); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.18s 00:00:00.42 Elapsed: 00:00:00.35
# Mc/sec: 1063.46
//
Query:       MMETSP1137-20121227|164_1  [L=310]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-11   42.4   0.9    3.9e-10   37.7   0.0    2.1  2  TIGR01385 TFSII: transcription elongation factor S-II


Domain annotation for each model (and alignments):
>> TIGR01385  TFSII: transcription elongation factor S-II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.7   0.0   9.5e-14   3.9e-10     141     230 ..     153     238 ..     133     243 .. 0.78
   2 !    3.3   0.1    0.0028        12     285     297 ..     296     308 ..     286     310 .] 0.86

  Alignments for each domain:
  == domain 1    score: 37.7 bits;  conditional E-value: 9.5e-14
  TIGR01385 141 dkvrellveaLakesdesasaidpealaveveellfeklgktekaykarvRsiifNlrdknNpdLrkkvltgeitpeklatlsaeelAsd 230
                +k +e+l +  a +++ ++ a + + l ++v++ l ++     + ++ ++R ++fNl+d +NpdLr+++l g++ + +l  ls +e+A  
  MMETSP1137-20121227|164_1 153 TKLKEALEAGFASDGRDVVPAQI-TVLTISVQQELSSA---PRETFRGKYRALLFNLKDAKNPDLRHRLLEGTLCARELLRLSPREMAXS 238
                56666666666767766655443.45667777766644...456699****************************************965 PP

  == domain 2    score: 3.3 bits;  conditional E-value: 0.0028
  TIGR01385 285 ttfvtCveCgNrW 297
                 t+ tC+ C  rW
  MMETSP1137-20121227|164_1 296 RTYATCTSCRERW 308
                59*********** PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (310 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        94  (0.0229157); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.24u 0.16s 00:00:00.40 Elapsed: 00:00:00.41
# Mc/sec: 997.97
//
Query:       MMETSP1137-20121227|165_1  [L=203]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (203 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       109  (0.0265724); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.17s 00:00:00.38 Elapsed: 00:00:00.37
# Mc/sec: 724.16
//
Query:       MMETSP1137-20121227|167_1  [L=56]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        30  (0.00731351); expected 82.0 (0.02)
Passed bias filter:                       29  (0.00706972); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.26
# Mc/sec: 284.28
//
Query:       MMETSP1137-20121227|168_1  [L=380]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      3e-24   82.8   0.1      4e-24   82.4   0.1    1.1  1  TIGR03903 TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
    2.5e-09   34.7   0.0    4.1e-09   34.0   0.0    1.3  1  TIGR03724 arch_bud32: Kae1-associated kinase Bud32


Domain annotation for each model (and alignments):
>> TIGR03903  TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.4   0.1   1.9e-27     4e-24       3     161 ..      75     225 ..      73     232 .. 0.90

  Alignments for each domain:
  == domain 1    score: 82.4 bits;  conditional E-value: 1.9e-27
  TIGR03903   3 ghkvaikllRedaaeeerlvaRFrReialCarLshPnivaLlDsGeaedgllFavFeyveGrtlrevLaadGaLpaaetgrLmlqvLDalaaahdaGvvhRDLkPqnimvsaadves.hakvLDFGigaLlpgvedadeatltrttevlGsPaYaaPeqL 161
                g+ vaik l       + +  R  +ei+l   L+hPn+++L +  +++   +  v eyveG  l evL+++     ++  ++ +q+  +++  h+ Gv hRDLkP+ni++ +++  s + +v DFG+++L+   e          +   GsP+Y aPe L
  MMETSP1137-20121227|168_1  75 GQLVAIKCLNRSRIVLASQGSRLAKEIQLLRLLNHPNVIRLHEVLHTNA-EILMVMEYVEGGDLLEVLNTQPRFKEEQVHHIFAQICCGVSFCHSLGVAHRDLKPENILIEKREGGSlKIRVADFGLSTLMQAGEM-L-------STACGSPHYVAPEIL 225
                678******999999**************************99999998.5668********************************************************99876652789*********865444.2.......2357*********87 PP

>> TIGR03724  arch_bud32: Kae1-associated kinase Bud32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.0   0.0     2e-12   4.1e-09      42     141 ..      95     206 ..      87     214 .. 0.82

  Alignments for each domain:
  == domain 1    score: 34.0 bits;  conditional E-value: 2e-12
  TIGR03724  42 eRtrkEarllseakkagvntPvvydvdpeekkivmeyiegkklkdlleekel.......ellkevGelvgklHkagivhgDlttsNiivk.....ddklyliDfGLgkkske 141
                +R  kE++ll+ +++  v   + +  ++ e  +vmey+eg +l ++l+++         +++ ++   v+ +H+ g++h Dl ++Ni+++     + k+ + DfGL+   + 
  MMETSP1137-20121227|168_1  95 SRLAKEIQLLRLLNHPNVIRLHEVLHTNAEILMVMEYVEGGDLLEVLNTQPRfkeeqvhHIFAQICCGVSFCHSLGVAHRDLKPENILIEkreggSLKIRVADFGLSTLMQA 206
                678888888888877766655555556667999***************9877889999999999*************************7455545578999****987665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (380 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        73  (0.0177962); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.30u 0.13s 00:00:00.43 Elapsed: 00:00:00.64
# Mc/sec: 783.69
//
Query:       MMETSP1137-20121227|169_1  [L=135]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (135 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        89  (0.0216967); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.17s 00:00:00.33 Elapsed: 00:00:00.46
# Mc/sec: 387.36
//
Query:       MMETSP1137-20121227|170_1  [L=39]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (39 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        25  (0.00609459); expected 82.0 (0.02)
Passed bias filter:                       24  (0.0058508); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.16s 00:00:00.27 Elapsed: 00:00:00.52
# Mc/sec: 98.99
//
Query:       MMETSP1137-20121227|172_1  [L=120]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (120 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        68  (0.0165773); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.14s 00:00:00.29 Elapsed: 00:00:00.28
# Mc/sec: 565.67
//
Query:       MMETSP1137-20121227|174_1  [L=574]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.9e-21   72.8   0.0    1.8e-20   71.2   0.0    1.7  1  TIGR03520 GldE: gliding motility-associated protein GldE
  ------ inclusion threshold ------
      0.047   11.4   0.0      0.093   10.4   0.0    1.5  1  TIGR03865 PQQ_CXXCW: PQQ-dependent catabolism-associated CXXCW motif protein


Domain annotation for each model (and alignments):
>> TIGR03520  GldE: gliding motility-associated protein GldE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.2   0.0   8.8e-24   1.8e-20       2     319 ..      46     393 ..      45     405 .. 0.78

  Alignments for each domain:
  == domain 1    score: 71.2 bits;  conditional E-value: 8.8e-24
  TIGR03520   2 illlllsalisgsevalfslssedleeeee....eeskkekivinllekpkkllatiliannliniaivllftslseelfgsletellrfllevvivtflillfGeilPkvyasrnslkfaklmaklisildkllsplslvlravt.lliekklgkkksnlsvdel......sqa.....leltdeedttkeekkilkGivsfGntdtkqvmksrldifaldeeesfk.eviekiiekgysriPvyketi...........dnikGvlyvkdllpylnkkdfeWqsll....reayfvPenkklddllkdfqekkvhlaiv..v.......deyGGtsGlvslediieeiv.Gdisdefd 319
                ++ll  sal sg  ++l+s++ ++l+         e+k+++ +  +  + + ll+t+li n ++n  + +l++++++ ++g             v+ t +il+fGei+P+  ++r+ l+   +++ ++++++  +  ++ ++ ++    + ++lg   +  ++++l        a      el+d +   ++e   + G +s+ + ++ q+m+   d+f ++ +   + +++++i ++g++riPv k              d + G+l  kdl+    +  +  ++ll    r +     +  + +l++df+  ++hla v  v       d +    G+v+led++ee++  +i de d
  MMETSP1137-20121227|174_1  46 VVLLCFSALFSGLTLGLLSVDVSQLQLIIAggspREKKNAERILPIRRRGNLLLCTLLIGNAIVNSFLAILTATITSGVLG------------AVLSTGFILIFGEIIPQSVCTRHGLAIGARLVDIVRLFMLAFFIFAWPISKILdYALGEELGTTYTRTELKQLftmqaaAAAqeqgeXELSDGDGIRQQEATFMCGALSLSERTAFQIMTRMSDVFFVHADDVLDyNLMRRIADSGHTRIPVLKAGTdaaaaagavrsDAMLGLLSTKDLILVDPEAAMPVEQLLkhcgRPVLTFWYDSPVAQLFRDFKRGRSHLAFVqqVnnedetrDPFYELVGIVTLEDVLEELIqAEIVDESD 393
                6999*****************9999876541111455556678888899999*************9998888888877764............5677899********************************99999999988875146788888877777777763322211112222257888888899999*************************99988765438****************97651111122222256889******9987777999999999333344566677889*****************955244422234577889***********87469999987 PP

>> TIGR03865  PQQ_CXXCW: PQQ-dependent catabolism-associated CXXCW motif protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   4.5e-05     0.093     119     159 ..     250     290 ..     220     296 .. 0.88

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 4.5e-05
  TIGR03865 119 lvvyCredCWlsWnaakRalelGykevyWypdGvdaWeaag 159
                 v++ ++d  l +n  +R+++ G++++   + G+da +aag
  MMETSP1137-20121227|174_1 250 DVFFVHADDVLDYNLMRRIADSGHTRIPVLKAGTDAAAAAG 290
                49*********************************988887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (574 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       136  (0.0331546); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.15s 00:00:00.55 Elapsed: 00:00:00.54
# Mc/sec: 1403.00
//
Query:       MMETSP1137-20121227|175_1  [L=335]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (335 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        73  (0.0177962); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.17s 00:00:00.43 Elapsed: 00:00:00.33
# Mc/sec: 1339.89
//
Query:       MMETSP1137-20121227|176_1  [L=266]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00024   18.6   0.0     0.0033   14.9   0.0    2.1  1  TIGR01262 maiA: maleylacetoacetate isomerase


Domain annotation for each model (and alignments):
>> TIGR01262  maiA: maleylacetoacetate isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0     8e-07    0.0033      47     170 ..     114     221 ..      92     256 .. 0.74

  Alignments for each domain:
  == domain 1    score: 14.9 bits;  conditional E-value: 8e-07
  TIGR01262  47 NPqelvPtLkidegevltqSlAiieyLeetypepaLlpkdpakrarvralalliacdihPlqNlrvlqlleeklgvdeeekkewlkhwiekGlaalEellkekagafcvGdevtladvcLvpqv 170
                N ++++P+L++d g+++ qS Ai  y+ ++     +  +   +     al  +ia  i+      + +  +++ ++ +e+ ++wlk+ + +    lE++l + +g f+vG++++ ad+ L   +
  MMETSP1137-20121227|176_1 114 N-MNRIPILVVD-GATIGQSSAIERYIARQLG---MYGSTDVE----GALIDMIAEHIKD-----ISKSYQDEKKKGPEAAATWLKDSLPEWXGKLEATLGS-EG-FAVGNKMSWADIKLFQFM 221
                4.789*******.6************999876...44444444....5566667777764.....5566666667899**********************97.55.************997655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (266 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       136  (0.0331546); expected 82.0 (0.02)
Passed bias filter:                      130  (0.0316919); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.27u 0.18s 00:00:00.45 Elapsed: 00:00:01.05
# Mc/sec: 334.37
//
Query:       MMETSP1137-20121227|177_1  [L=392]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (392 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        84  (0.0204778); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.17s 00:00:00.45 Elapsed: 00:00:00.54
# Mc/sec: 958.14
//
Query:       MMETSP1137-20121227|178_1  [L=103]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (103 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        32  (0.00780107); expected 82.0 (0.02)
Passed bias filter:                       30  (0.00731351); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.23
# Mc/sec: 591.08
//
Query:       MMETSP1137-20121227|179_1  [L=754]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (754 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       245  (0.059727); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.67u 0.18s 00:00:00.85 Elapsed: 00:00:00.77
# Mc/sec: 1292.46
//
Query:       MMETSP1137-20121227|180_1  [L=371]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.6e-18   62.6   0.0    4.8e-18   62.2   0.0    1.1  1  TIGR03903 TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
    2.3e-07   28.3   0.3    4.1e-07   27.5   0.0    1.5  2  TIGR03724 arch_bud32: Kae1-associated kinase Bud32
     0.0055   13.7   0.1      0.013   12.4   0.0    1.6  2  TIGR02721 ycfN_thiK: thiamine kinase
  ------ inclusion threshold ------
      0.027   11.5   0.0      0.043   10.8   0.0    1.3  1  TIGR02974 phageshock_pspF: psp operon transcriptional activator


Domain annotation for each model (and alignments):
>> TIGR03903  TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.2   0.0   4.7e-21   4.8e-18       5     161 ..      58     204 ..      54     215 .. 0.88

  Alignments for each domain:
  == domain 1    score: 62.2 bits;  conditional E-value: 4.7e-21
  TIGR03903   5 kvaikllRedaaeeerlvaRFrReialCarLshPnivaLlDsGeaedgllFavFeyveGrtlrevLaadGaLpaaetgrLmlqvLDalaaahdaGvvhRDLkPqnimvsaadveshakvLDFGigaLlpgvedadeatltrttevlGsPaYaaPeqL 161
                k a+k + +++ ++         ei++  +L+hP iv L +  +a   + + v e+  G  l +++  +G    +e  +L +q+L ++   h+  +vhRD+kP+ni+   +  +   k++DFG + + +  ++         t + G+P Y aPe L
  MMETSP1137-20121227|180_1  58 KYAVKEVANETLTDDENLEALETEINILRQLRHPYIVTLKE-VVATSSFTYIVMELLSGGELFNRIVEKGCFKEHEGQALFAQILLSMEYLHSLNIVHRDVKPENILYISE-GSDDIKLIDFGYAGVWSADKA--------LTGLCGTPDYVAPEVL 204
                667888888888999999999****************9865.566677**********************************************************87655.56678******9877665444........45789*********87 PP

>> TIGR03724  arch_bud32: Kae1-associated kinase Bud32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.5   0.0     4e-10   4.1e-07      44     137 ..      78     181 ..      56     190 .. 0.79
   2 ?   -3.7   0.0       1.4   1.5e+03     173     195 ..     250     272 ..     238     274 .. 0.58

  Alignments for each domain:
  == domain 1    score: 27.5 bits;  conditional E-value: 4e-10
  TIGR03724  44 trkEarllseakkagvntPvvydvdpeekkivmeyiegkklkdlleekel.......ellkevGelvgklHkagivhgDlttsNiiv...kddklyliDfGLgk 137
                  +E+++l+++++  + t   +  + + + ivme ++g +l + + ek          l+ ++   +  lH+ +ivh D+ ++Ni++    +d++ liDfG + 
  MMETSP1137-20121227|180_1  78 LETEINILRQLRHPYIVTLKEVVATSSFTYIVMELLSGGELFNRIVEKGCfkehegqALFAQILLSMEYLHSLNIVHRDVKPENILYiseGSDDIKLIDFGYAG 181
                567788888888777766666666666689******9988866666655557788889999************************99544489********876 PP

  == domain 2    score: -3.7 bits;  conditional E-value: 1.4
  TIGR03724 173 egYkeeveeekavlekvkeiesr 195
                  Y+ +++e+k v e+ k++ +r
  MMETSP1137-20121227|180_1 250 ATYEFYENEWKGVSEQAKDVVRR 272
                34555555666677776666554 PP

>> TIGR02721  ycfN_thiK: thiamine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.4   0.0   1.3e-05     0.013     145     184 ..     149     191 ..     134     215 .. 0.77
   2 ?   -2.8   0.0      0.58   5.9e+02      54      76 ..     277     299 ..     265     310 .. 0.73

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 1.3e-05
  TIGR02721 145 klallHlDvhaeNlvkteqG...lklIDWEYAsdgDialeLaa 184
                +l  +H Dv  eN++  ++G   +klID  YA+      +L+ 
  MMETSP1137-20121227|180_1 149 SLNIVHRDVKPENILYISEGsddIKLIDFGYAGVWSADKALTG 191
                67889**********887775558********97665555555 PP

  == domain 2    score: -2.8 bits;  conditional E-value: 0.58
  TIGR02721  54 aPkvilvneewllvewleGevit 76 
                 Pk  ++ ee l   wl+G+v +
  MMETSP1137-20121227|180_1 277 DPKERMTMEELLAHPWLKGSVDA 299
                46777777777777888887765 PP

>> TIGR02974  phageshock_pspF: psp operon transcriptional activator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   4.2e-05     0.043     197     271 ..     241     314 ..     232     356 .. 0.68

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 4.2e-05
  TIGR02974 197 elfsgftekakealleysWPGnvreLknvversvyrageeeaaieeiildPfaspwrkkkeaeaeeeaeeeeaee 271
                e++ +f ++a+ ++ e +W G   + k+vv r +    +e++++ee+  +P+      + +a+ e++++  ++++
  MMETSP1137-20121227|180_1 241 EQLLKFVAEATYEFYENEWKGVSEQAKDVVRRLLVVDPKERMTMEELLAHPWLKGSVDACRAKMEQKKT-PATNS 314
                44689**********************************************987654433333332222.11111 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (371 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       135  (0.0329108); expected 82.0 (0.02)
Passed bias filter:                      121  (0.0294978); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.35u 0.20s 00:00:00.55 Elapsed: 00:00:00.55
# Mc/sec: 890.33
//
Query:       MMETSP1137-20121227|181_1  [L=317]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (317 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        64  (0.0156021); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.17s 00:00:00.41 Elapsed: 00:00:00.42
# Mc/sec: 996.20
//
Query:       MMETSP1137-20121227|182_1  [L=374]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (374 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       147  (0.0358362); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.16s 00:00:00.44 Elapsed: 00:00:00.32
# Mc/sec: 1542.62
//
Query:       MMETSP1137-20121227|183_1  [L=141]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.5e-29   97.5   3.4    7.8e-29   97.2   2.3    1.1  1  TIGR00517 acyl_carrier: acyl carrier protein
    7.4e-06   23.8   0.1      1e-05   23.4   0.1    1.2  1  TIGR01688 dltC: D-alanine--poly(phosphoribitol) ligase, subunit 2
    0.00065   14.9   0.0    0.00078   14.7   0.0    1.0  1  TIGR03443 alpha_am_amid: L-aminoadipate-semialdehyde dehydrogenase
     0.0016   13.0   0.3     0.0017   12.9   0.2    1.0  1  TIGR02813 omega_3_PfaA: polyketide-type polyunsaturated fatty acid synthase PfaA
      0.007   14.7   0.0      0.011   14.0   0.0    1.4  1  TIGR04069 ocin_ACP_rel: peptide maturation system acyl carrier-related protein


Domain annotation for each model (and alignments):
>> TIGR00517  acyl_carrier: acyl carrier protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.2   2.3   9.5e-32   7.8e-29       1      75 [.      65     139 ..      65     141 .] 0.96

  Alignments for each domain:
  == domain 1    score: 97.2 bits;  conditional E-value: 9.5e-32
  TIGR00517   1 kqeiiekvkkiikeqlnvdedkvttdasfveDLgaDSLDtvELvmalEeeFdieipdeeAekiatVgdavdyiee 75 
                ++++++kvk+ii+eql+vd ++vt+dasf+eDLgaDSLD vEL+ma+Ee+FdieipdeeAe ++t  + +  i+ 
  MMETSP1137-20121227|183_1  65 MDDVESKVKDIIAEQLGVDVASVTPDASFTEDLGADSLDAVELIMAIEEAFDIEIPDEEAEGMTTPAECITAIKA 139
                6789*************************************************************9999998875 PP

>> TIGR01688  dltC: D-alanine--poly(phosphoribitol) ligase, subunit 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.4   0.1   1.3e-08     1e-05       3      55 ..      71     123 ..      69     138 .. 0.86

  Alignments for each domain:
  == domain 1    score: 23.4 bits;  conditional E-value: 1.3e-08
  TIGR01688   3 evLDvLaevaeddvvkenpDvelfeeGllDsfgtveLLLeiqnkldievpise 55 
                +v D++ae  + dv    pD  + e+   Ds+++veL+++i++ +die+p  e
  MMETSP1137-20121227|183_1  71 KVKDIIAEQLGVDVASVTPDASFTEDLGADSLDAVELIMAIEEAFDIEIPDEE 123
                799*******************999999********************98554 PP

>> TIGR03443  alpha_am_amid: L-aminoadipate-semialdehyde dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0   9.5e-07   0.00078     841     900 ..      60     120 ..      42     127 .. 0.89

  Alignments for each domain:
  == domain 1    score: 14.7 bits;  conditional E-value: 9.5e-07
  TIGR03443 841 aeeeeltetekeirdlWlevlPnkpatiskddsff.dlGGhsilatrlifelrkklvvevp 900
                 +  ++ ++e++++d+ +e l    a++++d sf  dlG  s+ a  li+ + + + +e+p
  MMETSP1137-20121227|183_1  60 RAAITMDDVESKVKDIIAEQLGVDVASVTPDASFTeDLGADSLDAVELIMAIEEAFDIEIP 120
                456678899*************************769**********************98 PP

>> TIGR02813  omega_3_PfaA: polyketide-type polyunsaturated fatty acid synthase PfaA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.9   0.2   2.1e-06    0.0017    1395    1457 ..      53     115 ..      31     139 .. 0.58

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 2.1e-06
  TIGR02813 1395 saavaaasaavdadeiqsvmlavvadktGyptemlelemdmeadlGidsikrveilGtvqdel 1457
                 ++ v    aa+ +d+++s + +++a++ G  +  +  +     dlG ds+  ve++ ++ + +
  MMETSP1137-20121227|183_1   53 PSRVSPVRAAITMDDVESKVKDIIAEQLGVDVASVTPDASFTEDLGADSLDAVELIMAIEEAF 115 
                 333444445566666666666666666666665555555556666666666666655555543 PP

>> TIGR04069  ocin_ACP_rel: peptide maturation system acyl carrier-related protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.0   1.4e-05     0.011      27      61 ..      89     123 ..      67     128 .. 0.77

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 1.4e-05
  TIGR04069  27 eknllgeklglsprdLvlllldvekqFnikipeee 61 
                 +  + e+lg    d v l +++e+ F i+ip ee
  MMETSP1137-20121227|183_1  89 PDASFTEDLGADSLDAVELIMAIEEAFDIEIPDEE 123
                45568899999999******************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (141 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       124  (0.0302292); expected 82.0 (0.02)
Passed bias filter:                      112  (0.0273038); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.21u 0.13s 00:00:00.34 Elapsed: 00:00:00.40
# Mc/sec: 465.26
//
Query:       MMETSP1137-20121227|184_1  [L=489]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.6e-14   50.6  25.7      2e-12   45.3   4.6    3.3  3  TIGR00880 2_A_01_02: multidrug resistance protein
    1.8e-08   32.0  18.1    8.5e-08   29.8  12.5    2.0  1  TIGR00710 efflux_Bcr_CflA: drug resistance transporter, Bcr/CflA subfamily
    0.00018   18.8  22.3     0.0043   14.3   7.6    2.2  2  TIGR00900 2A0121: H+ Antiporter protein
    0.00078   16.1   1.2    0.00078   16.1   0.9    2.7  4  TIGR00711 efflux_EmrB: drug resistance MFS transporter, drug:H+ antiporter-2 (14 Spanner) (DHA2) family


Domain annotation for each model (and alignments):
>> TIGR00880  2_A_01_02: multidrug resistance protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.3   4.6     2e-15     2e-12       1     140 [.     115     255 ..     115     256 .. 0.91
   2 ?    1.3   0.3     0.073        75      44      75 ..     326     357 ..     315     379 .. 0.74
   3 !   13.5   3.6   1.2e-05     0.013      63     138 ..     392     467 ..     377     469 .. 0.84

  Alignments for each domain:
  == domain 1    score: 45.3 bits;  conditional E-value: 2e-15
  TIGR00880   1 glllagyAlgqlvvsplsglltdrvGrkpvllvglfifvlsqllfalssnitvliiarilqGfgaaaalvagaaliadiikee..ersvalgllsagialgpilGpllGavlaqalgwralflilallallafilllfllpe 140
                gl +a+ A++ +++++ +g ++  + rkp+l+vg ++  l+++ +a ++++++++  r+l+G g+aaa +a +a+  d++++   +r+  lg+  a+ +l++  Gp+ G++l+q  g   l +i++  +l+ ++ ++ +lpe
  MMETSP1137-20121227|184_1 115 GLIVAMPAVARVLLNLPLGSII-DIARKPPLVVGSVLEGLGAIGTAGATSLATMLPPRLLVGAGSAAAGAASQAYTMDVVERYpaQRGLLLGTTQAAYTLAFAAGPACGGWLTQHAGSPSLPFIAIGSSLIISAGMFSFLPE 255
                7899***************888.689*******************************************************8777****************************88888777777777777777777777777 PP

  == domain 2    score: 1.3 bits;  conditional E-value: 0.073
  TIGR00880  44 lfalssnitvliiarilqGfgaaaalvagaal 75 
                  a+   + +++ a +l Gf++a++ +++a l
  MMETSP1137-20121227|184_1 326 WGATPGDLGTMYSAVALLGFASAPVGTVTAXL 357
                55777888999999999999999999998654 PP

  == domain 3    score: 13.5 bits;  conditional E-value: 1.2e-05
  TIGR00880  63 fgaaaalvagaaliadiikeeersvalgllsagialgpilGpllGavlaqalgwralflilallallafilllfll 138
                +g a++++a +al+ad++ + +r+++ +l++ ++ + +++ p+l + +a+ ++ +  +l+ a  +l++ +  + l+
  MMETSP1137-20121227|184_1 392 VGEAMMVAASTALAADVTRPAQRGAHASLMNQVQDVTFVFMPVLLGTMAATTSNSSALLLTATCMLASNVGFVALM 467
                78899**************************************999999887777777777777777766666665 PP

>> TIGR00710  efflux_Bcr_CflA: drug resistance transporter, Bcr/CflA subfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.8  12.5   8.3e-11   8.5e-08       7     374 ..      79     459 ..      73     467 .. 0.76

  Alignments for each domain:
  == domain 1    score: 29.8 bits;  conditional E-value: 8.3e-11
  TIGR00710   7 vllLglLaiLaplgidmYlpalpeiakdlsvsasavqltltlyllglavgqLllGplsDsyGRkpvlLlgllvfalsslvlalsenietllvlRflqafgasaalVisqalvrDiya..keelskvysilmlllalaPllapliGgyvlvflsWhaiFavlsligillvaliflllpeTkakekri................qistsvetfllllkdk.ellgyalivgassgglfaflsaapfvlidimgvspevfgllfalniialifgsfligrlvkkigaksllrialvllivsavllvltallglvslalviavailvgigvslvlsialalaLe.efphvaGtasallgtlrlvlgaivgllvslikeet....alpmvllvlvla 374
                + lL +  +L+ +gi m +p lp+ ++ ++ s+s v l  ++ ++   +  L lG + D+  Rkp+l +g ++  l++++ a + + +t+l  R+l + g +aa   sqa   D+ +   ++   + ++     +la + +p  Gg++ ++++   + ++     ++++a +f +lpe ++  + +                 ++ts+e f +l++++ +  +  l  g ++g   a+l+  p    di g +p   g ++  +++     +f    + +      ++ ++     +sa++l +      +  + + a + l  +g +++++   ala +   p   G  ++l++ ++ v    +  l++ +  +t    al +++++++ +
  MMETSP1137-20121227|184_1  79 LSLLVCGGMLTTMGIGMIIPVLPAYSESIGLSSSGVGLIVAMPAVARVLLNLPLGSIIDI-ARKPPLVVGSVLEGLGAIGTAGATSLATMLPPRLLVGAGSAAAGAASQAYTMDVVEryPAQRGLLLGTTQAAYTLAFAAGPACGGWLTQHAGSPSLPFIAIGSSLIISAGMFSFLPESQVAPAASvlpaktsamrwetvkgAMQTSIESFSDLIRQQpQCALLCLRFGLITG-WSAWLTVLPLHAADIWGATPGDLGTMYSAVALL----GFASAPVGTVTAXLRVINCGA---GASALALGILPWA--GGKVGFYACMGLWDVGEAMMVAASTALAADvTRPAQRGAHASLMNQVQDVTFVFMPVLLGTMAATTsnssALLLTATCMLAS 459
                56788889**************************************99***********8.5****************************************************988333577889**************************9988866666678899999*******987765544555555566667777788999********98345566666776665.66**********************999876654....333333333333333333332...2344444444433..4555666666666666666666666666552456778999999999999888888888886655441111444444444444 PP

>> TIGR00900  2A0121: H+ Antiporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   7.6   4.1e-06    0.0043       3     192 ..      81     267 ..      79     355 .. 0.79
   2 !   10.4   2.5   6.2e-05     0.063      95     173 ..     384     462 ..     352     480 .. 0.87

  Alignments for each domain:
  == domain 1    score: 14.3 bits;  conditional E-value: 4.1e-06
  TIGR00900   3 lllaaqlisllgsaitqvalalyvlaktgsasvlslaalagllplvvvspiaGvlvDRldrkkvmvgaDliravlvavlpfvallgleiwmvlvvalilsiaqafftpatsailPdlvpeeeltra..nslsqlvrslieivgPgiggllvatlgikaailvdavgf.lisallivsvripkkaaseeeelse 192
                ll+ + +++ +g ++   +l+ y   +  s s ++l++++  ++ v+++++ G ++D +++  ++vg+ ++ ++ ++    ++    +++ +l   l+ ++ +a+  +a +a++ d+v +   +r+   ++ q+++ l+   gP+ gg l +  g   + ++ + ++ +isa++ ++++  + a+  ++ l+ 
  MMETSP1137-20121227|184_1  81 LLVCGGMLTTMGIGMIIPVLPAYSESIGLSSSGVGLIVAMPAVARVLLNLPLGSIIDIARKPPLVVGS-VLEGLGAIGTAGAT----SLATMLPPRLLVGAGSAAAGAASQAYTMDVVERYPAQRGllLGTTQAAYTLAFAAGPACGGWLTQHAGSPSLPFIAIGSSlIISAGMFSFLPESQVAP-AASVLPA 267
                8999*****************************************************87777777765.55666666666666....8999***************************998666663379**********************999888888877776267888888877666665.5555554 PP

  == domain 2    score: 10.4 bits;  conditional E-value: 6.2e-05
  TIGR00900  95 lvvalilsiaqafftpatsailPdlvpeeeltranslsqlvrslieivgPgiggllvatlgikaailvdavgflisall 173
                ++ +++  + +a   +a +a+  d++++++  + +sl++ v+++  ++ P++ g ++at++ + a+l++a   l s + 
  MMETSP1137-20121227|184_1 384 YACMGLWDVGEAMMVAASTALAADVTRPAQRGAHASLMNQVQDVTFVFMPVLLGTMAATTSNSSALLLTATCMLASNVG 462
                6677888999999*********************************************************998888664 PP

>> TIGR00711  efflux_EmrB: drug resistance MFS transporter, drug:H+ antiporter-2 (14 Spanner) (DHA2) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.8      0.16   1.6e+02     102     140 ..      83     122 ..      80     129 .. 0.87
   2 !   16.1   0.9   7.6e-07   0.00078      81     163 ..     155     239 ..     138     264 .. 0.77
   3 ?   -3.2   0.0      0.54   5.5e+02     275     310 ..     315     350 ..     303     355 .. 0.87
   4 ?   -1.8   0.1       0.2     2e+02     103     147 ..     393     437 ..     390     464 .. 0.60

  Alignments for each domain:
  == domain 1    score: -1.4 bits;  conditional E-value: 0.16
  TIGR00711 102 fggglliplseslllseyppekrglalalvglavlva.Pv 140
                + gg+l+ +   +++   p+++ +++l   g++++va P+
  MMETSP1137-20121227|184_1  83 VCGGMLTTMGIGMIIPVLPAYSESIGLSSSGVGLIVAmPA 122
                57999**********************9999999998555 PP

  == domain 2    score: 16.1 bits;  conditional E-value: 7.6e-07
  TIGR00711  81 sllcgvannlelliifRviQgfggglliplseslll..seyppekrglalalvglavlvaPvlGPiLgGwiieayeWrwiFlinv 163
                ++  + a +l +++  R++ g+g ++    s++  +   e  p++rgl l+    a ++a + GP  gGw++++     + +i +
  MMETSP1137-20121227|184_1 155 AIGTAGATSLATMLPPRLLVGAGSAAAGAASQAYTMdvVERYPAQRGLLLGTTQAAYTLAFAAGPACGGWLTQHAGSPSLPFIAI 239
                55567799***************9999999988654113444679***************************9987666665544 PP

  == domain 3    score: -3.2 bits;  conditional E-value: 0.54
  TIGR00711 275 vlllPlylqqvlgytalqaGlailpvglaalllsPi 310
                + +lPl   ++ g t+   G + + v+l  + ++P+
  MMETSP1137-20121227|184_1 315 LTVLPLHAADIWGATPGDLGTMYSAVALLGFASAPV 350
                568999999999999999999999999999999997 PP

  == domain 4    score: -1.8 bits;  conditional E-value: 0.2
  TIGR00711 103 ggglliplseslllseyppekrglalalvglavlvaPvlGPiLgG 147
                g+++++  s++l +    p++rg    l+  +  v  v+ P+L G
  MMETSP1137-20121227|184_1 393 GEAMMVAASTALAADVTRPAQRGAHASLMNQVQDVTFVFMPVLLG 437
                556666666666666666666666555555444444444444433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (489 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       147  (0.0358362); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.45u 0.17s 00:00:00.62 Elapsed: 00:00:00.39
# Mc/sec: 1654.94
//
Query:       MMETSP1137-20121227|185_1  [L=326]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (326 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        60  (0.014627); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.17s 00:00:00.42 Elapsed: 00:00:00.31
# Mc/sec: 1388.01
//
Query:       MMETSP1137-20121227|186_1  [L=111]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (111 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        78  (0.0190151); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.17s 00:00:00.34 Elapsed: 00:00:00.28
# Mc/sec: 505.20
//
Query:       MMETSP1137-20121227|187_1  [L=281]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (281 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        86  (0.0209654); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.14s 00:00:00.37 Elapsed: 00:00:00.39
# Mc/sec: 951.00
//
Query:       MMETSP1137-20121227|188_1  [L=204]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (204 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       155  (0.0377864); expected 82.0 (0.02)
Passed bias filter:                      115  (0.0280351); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.13s 00:00:00.34 Elapsed: 00:00:00.32
# Mc/sec: 841.43
//
Query:       MMETSP1137-20121227|190_1  [L=195]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (195 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       102  (0.0248659); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.16s 00:00:00.34 Elapsed: 00:00:00.36
# Mc/sec: 714.94
//
Query:       MMETSP1137-20121227|191_1  [L=104]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (104 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        62  (0.0151146); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.18s 00:00:00.32 Elapsed: 00:00:00.27
# Mc/sec: 508.40
//
Query:       MMETSP1137-20121227|193_1  [L=245]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (245 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       210  (0.0511945); expected 82.0 (0.02)
Passed bias filter:                      140  (0.0341297); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.17s 00:00:00.41 Elapsed: 00:00:00.43
# Mc/sec: 752.03
//
Query:       MMETSP1137-20121227|194_1  [L=32]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (32 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                         8  (0.00195027); expected 82.0 (0.02)
Passed bias filter:                        8  (0.00195027); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:00.39
# Mc/sec: 108.30
//
Query:       MMETSP1137-20121227|195_1  [L=475]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.8e-76  253.7   8.5    1.2e-75  252.9   5.9    1.4  1  TIGR02037 degP_htrA_DO: peptidase Do
    3.1e-57  192.1   9.6    6.1e-57  191.1   6.7    1.3  1  TIGR02038 protease_degS: periplasmic serine peptidase DegS
  ------ inclusion threshold ------
       0.01   12.6   0.1       0.01   12.6   0.1    1.6  2  TIGR02860 spore_IV_B: stage IV sporulation protein B


Domain annotation for each model (and alignments):
>> TIGR02037  degP_htrA_DO: peptidase Do
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  252.9   5.9   9.1e-79   1.2e-75      56     320 ..     149     427 ..     113     470 .. 0.87

  Alignments for each domain:
  == domain 1    score: 252.9 bits;  conditional E-value: 9.1e-79
  TIGR02037  56 ekveslGSGviisadgyvlTNnHvvdgakeikvkls...dgrefkaklvgkDektDiAvlkieak.kklpvvklgdsdklrvGdlvlAiGnPfglgetVtaGivSAlgrs..glnkedyeeFIQtDaaiNpGNSGGpLvnlkGeviGiNtaIlsksGgsvGigFAiPinlvkkvveqllkkgkvkrglLGvkiqevtkdlakslglekakGalvaevlkgspAekaGlk............aGDvilkvngkkiksaadlreaigtlkpgkkvklkilRkgke 320
                e  ++ GSG+i +++g v+TN+Hv++ga+  kv ++     + ++++lvg  + +D+Avlki++    l  +++g s++lrvG+++lAiGnPfgl+++ t G+vS+lgr+  + + + +++ IQtDaaiNpGNSGG+L++ +G++iG+NtaI+s+sG s+GigFAiP+++ k+ v +++k+gkv r+++G++ ++     a++lg+  ++G+lv  v  +s A++aGl+             GDvi+ +++++i+s +dl + + +++pg++vk  + R+  +
  MMETSP1137-20121227|195_1 149 EVPRGTGSGFIWDKEGHVVTNYHVIKGANGAKVGITtatGTSVYDSTLVGYNPDKDVAVLKINDYtGPLXPLAVGCSSTLRVGQTTLAIGNPFGLDHSLTLGVVSGLGREvmSPTGRPITNVIQTDAAINPGNSGGALLDSSGNLIGMNTAIYSPSGASAGIGFAIPVDTLKQQVPNIIKNGKVLRPTIGISYMQ--GAQARALGV--NRGVLVLGVPADSNAARAGLRgssrdqrtgqmiMGDVIIGIDNNSIDSDTDLFKVLDQYEPGQRVKXVVRRQTGQ 427
                567899**********************9877755422245679******************998799*****************************************943333444*************************************************************************9865..666889999..59******************855555555555569*******************************999997654 PP

>> TIGR02038  protease_degS: periplasmic serine peptidase DegS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  191.1   6.7   4.5e-60   6.1e-57      50     339 ..     122     427 ..      99     436 .. 0.85

  Alignments for each domain:
  == domain 1    score: 191.1 bits;  conditional E-value: 4.5e-60
  TIGR02038  50 avrraaPavv..nvynrslsenslnklsi.qglGsGvimskeGyiltnkhvikkadqivvalq..dG.rvfeaelvGsdsltdlavlkieadnlptiP..lnadrkpkvGdvvlaiGnPynlGqtitqGiisatGrnglssvGr..qnflqtdaainaGnsGGalvnsaGelvGintlsfqkaadeeaeGinfaiPiklaskileklirdGrvirGylGvdgedinslsaqllgledlrgivvtevdPngPaaragll............vrdvilkldnkevisaeelmdrvaelrPgskvlvtvlrkgkq 339
                   ra+P+vv  n y  +  + ++n +++ +g GsG i +keG+++tn+hvik a+   v +    G  v++++lvG ++  d+avlki+    p  P  +  +++ +vG   laiGnP+ l  ++t G++s  Gr+ +s++Gr   n +qtdaain GnsGGal++s+G+l+G+nt+ +  ++   + Gi+faiP++  ++ +  +i++G+v+r  +G++   ++  +a+ lg++  rg++v++v  ++ aaragl+            + dvi+ +dn+++ s  +l + + + +Pg++v+ +v r+  q
  MMETSP1137-20121227|195_1 122 LFLRATPSVVyiNTYISGTXRITMNAVEVpRGTGSGFIWDKEGHVVTNYHVIKGANGAKVGITtaTGtSVYDSTLVGYNPDKDVAVLKINDYTGPLXPlaVGCSSTLRVGQTTLAIGNPFGLDHSLTLGVVSGLGREVMSPTGRpiTNVIQTDAAINPGNSGGALLDSSGNLIGMNTAIYSPSG--ASAGIGFAIPVDTLKQQVPNIIKNGKVLRPTIGISY--MQGAQARALGVN--RGVLVLGVPADSNAARAGLRgssrdqrtgqmiMGDVIIGIDNNSIDSDTDLFKVLDQYEPGQRVKXVVRRQTGQ 427
                556899**984466888888889999999789*********************9997766554114426899******************98766655115678899************************************9667*******************************997765..689*******************************99..778888887776..8****************87422222222222267**********************************998765 PP

>> TIGR02860  spore_IV_B: stage IV sporulation protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.1      0.38   5.3e+02      92     127 ..     150     185 ..     135     196 .. 0.74
   2 ?   12.6   0.1   7.5e-06      0.01     105     171 ..     354     425 ..     323     435 .. 0.77

  Alignments for each domain:
  == domain 1    score: -2.9 bits;  conditional E-value: 0.38
  TIGR02860  92 vpGGqsiGvklntkGvlvvGfsdietekGkiesPae 127
                vp G   G   + +G +v  ++ i++++G +   ++
  MMETSP1137-20121227|195_1 150 VPRGTGSGFIWDKEGHVVTNYHVIKGANGAKVGITT 185
                566777788888899999999999999997754444 PP

  == domain 2    score: 12.6 bits;  conditional E-value: 7.5e-06
  TIGR02860 105 kGvlvvGf.sdiete....kGkiesPaeeagiqvGDlilkvngekikeeedvaklineag.geklkltikRkk 171
                +Gvlv+G  +d +++    +G+    ++++++ +GD+i+ +++++i++ +d+ k++++ + g+++k +++R+ 
  MMETSP1137-20121227|195_1 354 RGVLVLGVpADSNAAraglRGSS-RDQRTGQMIMGDVIIGIDNNSIDSDTDLFKVLDQYEpGQRVKXVVRRQT 425
                57777776322222211113444.567899999*************************999*********985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (475 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        75  (0.0182838); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.40u 0.16s 00:00:00.56 Elapsed: 00:00:00.64
# Mc/sec: 979.61
//
Query:       MMETSP1137-20121227|196_1  [L=211]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (211 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        90  (0.0219405); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.17s 00:00:00.35 Elapsed: 00:00:00.35
# Mc/sec: 795.71
//
Query:       MMETSP1137-20121227|197_1  [L=135]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        4.3    4.3  36.8        5.6    3.9  25.5    1.1  1  TIGR02794 tolA_full: protein TolA


Domain annotation for each model (and alignments):
>> TIGR02794  tolA_full: protein TolA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9  25.5    0.0014       5.6      93     191 ..      38     127 ..      26     134 .. 0.46

  Alignments for each domain:
  == domain 1    score: 3.9 bits;  conditional E-value: 0.0014
  TIGR02794  93 eqarqkelekqraaaekaak.kaeeaakekeekkkqaeeakakqaaEakakaeaeaKaekkakee.AakkaEeeakakaaaeakkkaEaeeakkkaeaeak 191
                eq +qk++          +k +a  +  ++   + q +e+ ak  +E++a+++a++ a +k+  + Aa+ aEee++++aa +akk++ a + ++ a++ ak
  MMETSP1137-20121227|197_1  38 EQSQQKNI----------KKtQAGNKGNQEGLSATQRAERDAKILQEKAAAKAAQREALAKQSPDgAAAVAEEEKRKQAARQAKKERLA-NSTQVAKQNAK 127
                34444444..........11122222222222333444555566666655555544334455555677778887766666666666643.22222222221 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (135 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       392  (0.0955631); expected 82.0 (0.02)
Passed bias filter:                      111  (0.02706); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.20u 0.22s 00:00:00.42 Elapsed: 00:00:00.54
# Mc/sec: 329.97
//
Query:       MMETSP1137-20121227|198_1  [L=412]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.9e-30  101.8   0.0    1.3e-29  101.4   0.0    1.1  1  TIGR01830 3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase
    1.8e-29  100.6   0.0    2.5e-29  100.1   0.0    1.1  1  TIGR01963 PHB_DH: 3-hydroxybutyrate dehydrogenase
    9.2e-26   88.8   0.0    1.3e-25   88.3   0.0    1.1  1  TIGR01829 AcAcCoA_reduct: acetoacetyl-CoA reductase
    1.9e-23   81.0   0.0    2.8e-23   80.5   0.0    1.2  1  TIGR03971 SDR_subfam_1: oxidoreductase, SDR family
    3.1e-23   80.3   0.0    4.4e-23   79.8   0.0    1.2  1  TIGR03206 benzo_BadH: 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase
    1.1e-20   71.9   0.0    1.4e-20   71.6   0.0    1.1  1  TIGR02415 23BDH: acetoin reductases
    2.3e-20   71.0   0.0    3.3e-20   70.5   0.0    1.1  1  TIGR01832 kduD: 2-deoxy-D-gluconate 3-dehydrogenase
      1e-17   62.3   0.0    1.3e-17   61.8   0.0    1.1  1  TIGR01500 sepiapter_red: sepiapterin reductase
    3.1e-14   50.8   0.1    4.4e-14   50.3   0.0    1.2  1  TIGR01831 fabG_rel: putative 3-oxoacyl-(acyl-carrier-protein) reductase
    1.3e-12   44.8   0.0    1.6e-12   44.4   0.0    1.0  1  TIGR02632 RhaD_aldol-ADH: rhamnulose-1-phosphate aldolase/alcohol dehydrogenase
    1.9e-10   38.1   0.9    5.3e-09   33.4   0.6    2.1  1  TIGR02685 pter_reduc_Leis: pteridine reductase
      2e-10   38.2   0.0    2.7e-10   37.7   0.0    1.1  1  TIGR03325 BphB_TodD: cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase
  ------ inclusion threshold ------
      0.017   12.5   0.1       0.12    9.6   0.0    2.0  2  TIGR01289 LPOR: light-dependent protochlorophyllide reductase
      0.017   12.5   0.0      0.026   11.9   0.0    1.3  1  TIGR01777 yfcH: TIGR01777 family protein
      0.024   11.6   0.0       0.04   10.9   0.0    1.3  1  TIGR00507 aroE: shikimate 5-dehydrogenase
      0.025   11.4   0.0      0.037   10.8   0.0    1.2  1  TIGR02824 quinone_pig3: putative NAD(P)H quinone oxidoreductase, PIG3 family
      0.034   11.7   0.0      0.058   10.9   0.0    1.4  1  TIGR00696 wecG_tagA_cpsF: glycosyl transferase, WecB/TagA/CpsF family


Domain annotation for each model (and alignments):
>> TIGR01830  3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  101.4   0.0   5.4e-32   1.3e-29       1     186 [.      64     252 ..      64     277 .. 0.85

  Alignments for each domain:
  == domain 1    score: 101.4 bits;  conditional E-value: 5.4e-32
  TIGR01830   1 alvtGasrgiGkaiakklakegakvviterskeekaeelaeelkea..gvkaaavkldvsdeeevk.elveeveeelgeidilvnnAGitrD..klllrmkeedwdevikvnLkgvfnvtkavlkkmikkrsGriinissvvgllGnagqanYaasKaGligltkslakElasrnitvnavaPGfietdmt 186
                a+vtGa+ giGka+a +la++g++v++ +r +++k++++++el+e+   v++a+ +++ s+ +e + ++v+ev ++l e+ +lvnn G++    + + ++++++ ++ +++n++++  +t+avl  m++++sG+++n+ss ++ +  +  a Y+a+K+ ++ lt+sla E+a+ +i + +  P +++t mt
  MMETSP1137-20121227|198_1  64 AVVTGATDGIGKAMAFELARRGCSVMLISR-SADKLAAVKAELSEKypNVEVACEAVEFSSLTETRrSQVAEVLDKL-EVGVLVNNVGMSYPfcQWFHELSDSEVSNLLSINIDSTTWMTRAVLPGMLRRKSGAVVNLSSAAAQSPLPLLAQYSAAKGYIVNLTRSLAAEYAKDGISFQCQFPLWVATTMT 252
                79**************************66.6677999999999961134455555555554443313455555544.5789*******985337899********************************************************************************************9 PP

>> TIGR01963  PHB_DH: 3-hydroxybutyrate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  100.1   0.0     1e-31   2.5e-29       2     187 ..      62     251 ..      61     263 .. 0.89

  Alignments for each domain:
  == domain 1    score: 100.1 bits;  conditional E-value: 1e-31
  TIGR01963   2 kvalvtGaasGiglaiakelaaaGakvvvndleeeaaeaaakeleea..ggevlalkadvtkeeeiadlieavaaefgsldiLvnnAGiq..hvapieefptekfekiiavnltsafhtiraalpimkkqgwGriiniasvhglvasafKsaYvaaKHglvGltKvlAlEvAetgitanaicPgyvrtpL 187
                k a+vtGa+ Gig+a+a ela+ G++v++ + ++++++a+++el+e+   +ev+  +++ ++ +e +++  a + +  ++ +Lvnn G+   + +   e    + ++++++n++s+  ++ra+lp+m +++ G ++n++s+ +    ++ + Y aaK  +v lt++lA E A+ gi  ++  P +v t +
  MMETSP1137-20121227|198_1  62 KWAVVTGATDGIGKAMAFELARRGCSVMLISRSADKLAAVKAELSEKypNVEVACEAVEFSSLTETRRSQVAEVLDKLEVGVLVNNVGMSypFCQWFHELSDSEVSNLLSINIDSTTWMTRAVLPGMLRRKSGAVVNLSSAAAQSPLPLLAQYSAAKGYIVNLTRSLAAEYAKDGISFQCQFPLWVATTM 251
                789********************************99999999998822455666777888877776554444444556789******973358999******************************************************************************************975 PP

>> TIGR01829  AcAcCoA_reduct: acetoacetyl-CoA reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.3   0.0   5.2e-28   1.3e-25       2     188 ..      63     252 ..      62     273 .. 0.91

  Alignments for each domain:
  == domain 1    score: 88.3 bits;  conditional E-value: 5.2e-28
  TIGR01829   2 valvtGglgGiGtaickrlakdGykvvanvap.neerakewlqekevegfdvavvkadvssfeeak.aavakveaelGpvdvlvnnaGitrd..avfkkmtkeqWeevidtnlnsvfnvtrpviegmlergfGriinissvnGlkGqfGqanysaakaGliGftkalaqegakkgvtvnviaPGyiatemv 188
                 a+vtG++ GiG+a++ +la+ G+ v+   ++ ++ +a + + +++  + +va   ++ ss  e++ ++va+v ++l +v vlvnn G+     + f+ ++  + ++++++n++s   +tr v+ gml r+ G ++n+ss   +      a ysaak  ++ +t++la+e ak g++     P ++at m+
  MMETSP1137-20121227|198_1  63 WAVVTGATDGIGKAMAFELARRGCSVMLISRSaDKLAAVKAELSEKYPNVEVACEAVEFSSLTETRrSQVAEVLDKL-EVGVLVNNVGMSYPfcQWFHELSDSEVSNLLSINIDSTTWMTRAVLPGMLRRKSGAVVNLSSAAAQSPLPLLAQYSAAKGYIVNLTRSLAAEYAKDGISFQCQFPLWVATTMT 252
                599***********************98777657778888889999999**********998777516799998776.8**********9753378**********************************************************************************************7 PP

>> TIGR03971  SDR_subfam_1: oxidoreductase, SDR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.5   0.0   1.2e-25   2.8e-23       3     215 ..      61     263 ..      59     303 .. 0.83

  Alignments for each domain:
  == domain 1    score: 80.5 bits;  conditional E-value: 1.2e-25
  TIGR03971   3 GkvalitGaarGqGraeavrlaaeGadiiaidlceplsdvvtypaatredldetaklvealGrkvlarkadvrkleelr.avveegveefGrldvvvanaGvls.ygr.afelseeqWdtvldvnlkGvWktvkavvPalierknGGsiiivssvaglkalpglahyaaakhGlvgltktlanelaeygirvnsihPtsvdtamiepeamrelfak 215
                Gk a++tGa+ G G+a a  la+ G  ++ i      +d +   aa +++l e    ve      +++ ++  +l e r + v+e ++++  + v+v+n G+   + +  +els+ +  ++l +n++ +    +av+P ++ rk  G+++ +ss+a+   lp la y+aak  +v lt++la e a+ gi      P  v+t+m+ p++   +  +
  MMETSP1137-20121227|198_1  61 GKWAVVTGATDGIGKAMAFELARRGCSVMLIS---RSADKL---AAVKAELSEKYPNVEV-----ACEAVEFSSLTETRrSQVAEVLDKL-EVGVLVNNVGMSYpFCQwFHELSDSEVSNLLSINIDSTTWMTRAVLPGMLRRK-SGAVVNLSSAAAQSPLPLLAQYSAAKGYIVNLTRSLAAEYAKDGISFQCQFPLWVATTMTFPNSKVPVDKR 263
                999**********************9987654...344444...899********99985.....5667778888776515677777777.689*******8542333267***************9987778*********99.78999*******************************************************99887766554 PP

>> TIGR03206  benzo_BadH: 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.8   0.0   1.8e-25   4.4e-23       3     182 ..      61     244 ..      59     267 .. 0.87

  Alignments for each domain:
  == domain 1    score: 79.8 bits;  conditional E-value: 1.8e-25
  TIGR03206   3 dkvaivtgggggiggaicrrfaeegakvavldlnaeaaekvaaairekggkaeavavditdrasvd.aavaaaeealg..pvdvlvnnagwd..vlkpflktekaewerliainltgalymhhavlkgmverkagrivniasdaarvgssgeavyaackgglvafsktlarelarhgitvnvvcp 182
                +k a+vtg + gig a+   +a+ g+ v ++  +a+    v a++ ek  + e va++  + +s+  +  + + e l    v vlvnn g      + f +  ++e  +l++in+  + +m  avl+gm+ rk+g +vn++s aa++     a y+a kg +v ++++la e+a++gi+ +   p
  MMETSP1137-20121227|198_1  61 GKWAVVTGATDGIGKAMAFELARRGCSVMLISRSADKLAAVKAELSEKYPNVE-VACEAVEFSSLTeTRRSQVAEVLDklEVGVLVNNVGMSypFCQWFHELSDSEVSNLLSINIDSTTWMTRAVLPGMLRRKSGAVVNLSSAAAQSPLPLLAQYSAAKGYIVNLTRSLAAEYAKDGISFQCQFP 244
                5889********************************99**********99876.677777777764144566666665114789*****96522678999******************************************************************************9887666 PP

>> TIGR02415  23BDH: acetoin reductases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.6   0.0     6e-23   1.4e-20       1     188 [.      62     252 ..      62     282 .. 0.88

  Alignments for each domain:
  == domain 1    score: 71.6 bits;  conditional E-value: 6e-23
  TIGR02415   1 kvalvtGaaqGiGkaiaerLakdGfavavadlneetaketakelkekgtkavavkldvsdkseveeaveqaveklGeld..vlvnnaGva..lvtpileiteeeleklynvnvkgvlfGiqaaaekfkklkhkGkiinaasiagvegspelsaysstkfavrgltqtaakeLakkgitvnayaPGivktemr 188
                k a+vtGa+ GiGka+a  La+ G +v++     +++++++ el+ek  +  +    v+  s  e+  +q +e l +l+  vlvnn G++  + + ++e+++ e+++l ++n+ ++ +  +a    + + ++ G ++n +s a++   p l+ ys++k  +  lt++ a e ak+gi   +  P  v t+m+
  MMETSP1137-20121227|198_1  62 KWAVVTGATDGIGKAMAFELARRGCSVMLISRSADKLAAVKAELSEKYPNVEVACEAVEFSSLTETRRSQVAEVLDKLEvgVLVNNVGMSypFCQWFHELSDSEVSNLLSINIDSTTWMTRAVLPGMLR-RKSGAVVNLSSAAAQSPLPLLAQYSAAKGYIVNLTRSLAAEYAKDGISFQCQFPLWVATTMT 252
                679******************************999*********9987776666666666666666666666666665227******98446899**********************99988887765.56799****************************************************99996 PP

>> TIGR01832  kduD: 2-deoxy-D-gluconate 3-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.5   0.0   1.4e-22   3.3e-20       5     191 ..      61     252 ..      58     265 .. 0.80

  Alignments for each domain:
  == domain 1    score: 70.5 bits;  conditional E-value: 1.4e-22
  TIGR01832   5 GkvalvtGantGlGqgiavglaeaGadivgvgiselsetqekvealGrkflslk.....adlad.eeaakalvdeaveeagkidilvnnaGiir..redavefsekdwddvlnvnlkavfllsqavakkllkqGrkgkiiniasllsfqGGirvpsytasksavaGltkllanewakkginvnaiaPGyletnnt 191
                Gk a+vtGa  G+G+++a  la+ G+ ++ +++s+ + ++ k  +l +k+ +++     +++++ +e+ ++ v+e++++  ++ +lvnn G+     +   e+s+++  ++l +n+++   +++av   +l++  +g ++n++s  +      ++ y+a+k  ++ lt++la+e+ak gi      P +++t  t
  MMETSP1137-20121227|198_1  61 GKWAVVTGATDGIGKAMAFELARRGCSVMLISRSADKLAAVKA-ELSEKYPNVEvaceaVEFSSlTETRRSQVAEVLDKL-EVGVLVNNVGMSYpfCQWFHELSDSEVSNLLSINIDSTTWMTRAVLPGMLRRK-SGAVVNLSSAAAQSPLPLLAQYSAAKGYIVNLTRSLAAEYAKDGISFQCQFPLWVATTMT 252
                9****************************99998766544433.334444333300011344441334445567777776.7899******9863257789******************************997.9******99877555556899**************************9999999998766 PP

>> TIGR01500  sepiapter_red: sepiapterin reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.8   0.0   5.6e-20   1.3e-17       3     184 ..      64     235 ..      62     260 .. 0.90

  Alignments for each domain:
  == domain 1    score: 61.8 bits;  conditional E-value: 5.6e-20
  TIGR01500   3 llvtGasrGfGrelaqelakrlkaegsvlvLlaRndeaLkeskaeieaevsalsvdlvsldleaakdvedllkaleesikkeeyerillinnaGtlgdvskrekelsDsknvqkyydsnvtslvvltsellkklkelqglektvvnlssLcaikpfkswalYCaskaaRdmffqvLaleek.e 184
                ++vtGa  G+G+++a ela+    +g  ++L++R+ + L   kae+  + ++  v   ++++++ +  e     + e    +++e  +l+nn G  +   + ++elsDs+ v +    n+ s   +t  +l  +   +     vvnlss +a  p++ +a Y a+k +   + + La e+  +
  MMETSP1137-20121227|198_1  64 AVVTGATDGIGKAMAFELAR----RGCSVMLISRSADKLAAVKAELSEKYPNVEVACEAVEFSSLT--ETRRSQVAEVL--DKLEVGVLVNNVGMSYPFCQWFHELSDSE-VSNLLSINIDSTTWMTRAVLPGML--RRKSGAVVNLSSAAAQSPLPLLAQYSAAKGYIVNLTRSLAAEYAkD 235
                79******************....8999***********************************998..55556676665..5677889********************85.8999**********9999998776..456678************************************9734 PP

>> TIGR01831  fabG_rel: putative 3-oxoacyl-(acyl-carrier-protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.3   0.0   1.8e-16   4.4e-14       2     206 ..      65     273 ..      64     290 .. 0.77

  Alignments for each domain:
  == domain 1    score: 50.3 bits;  conditional E-value: 1.8e-16
  TIGR01831   2 lvtgasrgigraialklaadgfeiavhyrsdradaeesvaairaqggnarll..kfdvadrvavrevleadiaehgayygvvlnagiard..aafpalseedwdavietnldgfynvihplvmpmirarkggriitlasvsgvmgnrgqvnysaakagligatkalavelakrkitvnciapglidtemv...aevekdlkealklvpmkrv 206
                +vtga+ gig+a+a +la  g  + +  rs    a ++ a++  +  n+++     + +   ++r    a++ ++     +v n g++    + f  ls+ +   ++  n+d+   + +  v+p +  rk g ++ l+s +         +ysaak  ++  t++la e ak  i+ +c  p  + t m    ++v+ d + +l +vp  + 
  MMETSP1137-20121227|198_1  65 VVTGATDGIGKAMAFELARRGCSVMLISRSADKLA-AVKAELSEKYPNVEVAceAVEFSSLTETRRSQVAEVLDKLEVGVLVNNVGMSYPfcQWFHELSDSEVSNLLSINIDSTTWMTR-AVLPGMLRRKSGAVVNLSSAAAQSPLPLLAQYSAAKGYIVNLTRSLAAEYAKDGISFQCQFPLWVATTMTfpnSKVPVDKRASL-MVPSMKT 273
                69**********************99988765444.4555666665555544114445566777777888888888777789999*99752267*******************977665.667777789**************99999****************************************9722233444444444.6665444 PP

>> TIGR02632  RhaD_aldol-ADH: rhamnulose-1-phosphate aldolase/alcohol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.4   0.0   6.7e-15   1.6e-12     414     596 ..      61     244 ..      41     290 .. 0.87

  Alignments for each domain:
  == domain 1    score: 44.4 bits;  conditional E-value: 6.7e-15
  TIGR02632 414 rrvalvtGgasGiGrevarrlvdeGahvvladldaeaaeavaaelvdkfGadkavalkldvtdeeavkaafaevalayGGvdivvnnaGiav..skpleeteleeWdlnldilatGyflvareaarllrkqglggnlvfiasknavvakknalaysaakaaeahlvrllaielaelgirvntvaP 596
                ++ a+vtG++ GiG+++a  l+ +G  v+l+   a++++av+ael +k+ + ++ +  ++  + ++ + +  + +l+   v ++vnn G++   ++ ++e +++e +  l i++     ++r     + +++  g +v ++s  a    +    ysaak   + l r la+e a+ gi      P
  MMETSP1137-20121227|198_1  61 GKWAVVTGATDGIGKAMAFELARRGCSVMLISRSADKLAAVKAELSEKYPNVEVACEAVEFSSLTETRRSQVAEVLDKLEVGVLVNNVGMSYpfCQWFHELSDSEVSNLLSINIDSTTWMTRAVLPGMLRRKS-GAVVNLSSAAAQSPLPLLAQYSAAKGYIVNLTRSLAAEYAKDGISFQCQFP 244
                5789**********************************************99999988898888888887777777888899********963368899999*****99******99999*999999988775.5689999*9999999****************************98776666 PP

>> TIGR02685  pter_reduc_Leis: pteridine reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.4   0.6   2.2e-11   5.3e-09       4     198 ..      64     239 ..      62     257 .. 0.79

  Alignments for each domain:
  == domain 1    score: 33.4 bits;  conditional E-value: 2.2e-11
  TIGR02685   4 alvtGaakriGrsiavklhqeGyrvvlhyrrsaeaasslaaelnaeransavvvkadlsnsasllssceeiidacfrafGrcdvlvnnasafyptpllrgdaeegaaekkslevqvaelfGsnaiaplllikafaqrqkgtraelrssnlsivnlvdamtdqpllgfslytmakealeGltrsaalelaslqirv 198
                a+vtGa+  iG+++a +l ++G  v+l   rsa++ +++ ael ++ +n  v ++a   + +sl ++    +     +     vlvnn    yp      + ++         ++v++l+  n  +  ++++a         + lr ++ ++vnl  a ++ pl+  + y+ ak  ++ ltrs a e a  +i  
  MMETSP1137-20121227|198_1  64 AVVTGATDGIGKAMAFELARRGCSVMLI-SRSADKLAAVKAELSEKYPNVEVACEAV--EFSSLTETRRSQVAEVLDKL-EVGVLVNNVGMSYPFCQWFHELSD---------SEVSNLLSINIDSTTWMTRAVLP------GMLRRKSGAVVNLSSAAAQSPLPLLAQYSAAKGYIVNLTRSLAAEYAKDGISF 239
                8**********************99885.67888888999**************984..33344444433343333333.578**********97655544444.........55677777777666666666543......346777889**************************************988865 PP

>> TIGR03325  BphB_TodD: cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.7   0.0   1.1e-12   2.7e-10       6     174 ..      62     233 ..      58     258 .. 0.81

  Alignments for each domain:
  == domain 1    score: 37.7 bits;  conditional E-value: 1.1e-12
  TIGR03325   6 evvlvtggasglgralvdrfvaegarvavldksaagleeleaahgdkv..vgvegdvrllddhkeavarcv.eafgkld..tlipnagiwdystalvdipddrideafdevfeinvkgyllavkaalpalvasrgsviftvsna.gfypngggalytaakhavvglvkelayela 174
                + ++vtg + g+g+a+       g  v ++ +sa++l +++a+ ++k   v v+ ++  +++  e+ +  v e + kl+  +l++n+g+   s ++ +  ++  d    ++ +in+ +     +a+lp ++  + +++  +s a    p    a y+aak  +v l + la e+a
  MMETSP1137-20121227|198_1  62 KWAVVTGATDGIGKAMAFELARRGCSVMLISRSADKLAAVKAELSEKYpnVEVACEAVEFSSLTETRRSQVaEVLDKLEvgVLVNNVGM---SYPFCQWFHELSDSEVSNLLSINIDSTTWMTRAVLPGMLRRKSGAVVNLSSAaAQSPLPLLAQYSAAKGYIVNLTRSLAAEYA 233
                5689***********************************999999886335555666555555555443331445665522799***97...567777888888888999******************999988877777776615567788899******************98 PP

>> TIGR01289  LPOR: light-dependent protochlorophyllide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.0   0.00051      0.12       6      71 ..      64     130 ..      59     167 .. 0.71
   2 ?    0.5   0.0      0.31        76     204     236 ..     228     260 ..     212     287 .. 0.76

  Alignments for each domain:
  == domain 1    score: 9.6 bits;  conditional E-value: 0.00051
  TIGR01289   6 viitgassglglaaakalvekgkwhvvmacrdlekaekaakslg..lpkdsytilkldlasldsvrkf 71 
                +++tga+ g+g a a  l+ +g   v++  r  +k   +  +l   +p+ + +   ++++sl   r+ 
  MMETSP1137-20121227|198_1  64 AVVTGATDGIGKAMAFELARRG-CSVMLISRSADKLAAVKAELSekYPNVEVACEAVEFSSLTETRRS 130
                799*******************.99999***9999776665554115666666677888888777764 PP

  == domain 2    score: 0.5 bits;  conditional E-value: 0.31
  TIGR01289 204 lhrryhdetgivfaslypgcvadtglfreh.lpl 236
                l   y  + gi f++ +p  va+t  f ++ +p+
  MMETSP1137-20121227|198_1 228 LAAEYA-KDGISFQCQFPLWVATTMTFPNSkVPV 260
                555554.569**************9998752565 PP

>> TIGR01777  yfcH: TIGR01777 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   0.00011     0.026       2      47 ..      65     110 ..      64     161 .. 0.86

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 0.00011
  TIGR01777   2 litGgtGliGralveelekkghevviltrskekekeekkesakeva 47 
                ++tG+t  iG+a++ el ++g +v++++rs+ k ++ k e  ++++
  MMETSP1137-20121227|198_1  65 VVTGATDGIGKAMAFELARRGCSVMLISRSADKLAAVKAELSEKYP 110
                89*****************************977666655554444 PP

>> TIGR00507  aroE: shikimate 5-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00016      0.04     117     162 ..      61     107 ..      47     147 .. 0.76

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 0.00016
  TIGR00507 117 ekrvliiGAG.GaakavaleLlkadkeviiaNRtvekaeelaerlqe 162
                +k +++ GA  G +ka+a+eL++ +++v+++ R+ +k  ++  +l e
  MMETSP1137-20121227|198_1  61 GKWAVVTGATdGIGKAMAFELARRGCSVMLISRSADKLAAVKAELSE 107
                6778999995599*********************9886555444444 PP

>> TIGR02824  quinone_pig3: putative NAD(P)H quinone oxidoreductase, PIG3 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00015     0.037     128     181 ..      47     102 ..      10     157 .. 0.66

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 0.00015
  TIGR02824 128 wsnlfelakl..kagetvLihggasGiGt.taiqlakalgakvlvtagsdekleaae 181
                + ++++ ak   k g+++++ g++ GiG  +a  la++ g++v+   +s++kl+a++
  MMETSP1137-20121227|198_1  47 YRTIIRPAKNprKYGKWAVVTGATDGIGKaMAFELARR-GCSVMLISRSADKLAAVK 102
                444444444311459*************6268999975.999999999999999655 PP

>> TIGR00696  wecG_tagA_cpsF: glycosyl transferase, WecB/TagA/CpsF family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00024     0.058      40     112 ..      77     153 ..      46     173 .. 0.83

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 0.00024
  TIGR00696  40 llaragkekkgpiflyGgkedvlkqvkaklskeypklkivga...sgflkeeerkallkkiarsgaqlvl..valGvP 112
                +  + ++++   ++l+    d l+ vka+ls++yp++ ++ +   +  l+e +r+++++ + + + ++++  v++ +P
  MMETSP1137-20121227|198_1  77 MAFELARRGC-SVMLISRSADKLAAVKAELSEKYPNVEVACEaveFSSLTETRRSQVAEVLDKLEVGVLVnnVGMSYP 153
                5555555666.69999999********************99877789999999******9999988887634666666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (412 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       211  (0.0514383); expected 82.0 (0.02)
Passed bias filter:                      190  (0.0463189); expected 82.0 (0.02)
Passed Vit filter:                        34  (0.00828864); expected 4.1 (0.001)
Passed Fwd filter:                        17  (0.00414432); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              17  [number of targets reported over threshold]
# CPU time: 0.45u 0.18s 00:00:00.63 Elapsed: 00:00:00.51
# Mc/sec: 1066.26
//
Query:       MMETSP1137-20121227|199_1  [L=364]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (364 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        85  (0.0207216); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.13s 00:00:00.40 Elapsed: 00:00:00.39
# Mc/sec: 1231.90
//
Query:       MMETSP1137-20121227|200_1  [L=228]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (228 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        62  (0.0151146); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.14s 00:00:00.34 Elapsed: 00:00:00.47
# Mc/sec: 640.29
//
Query:       MMETSP1137-20121227|201_1  [L=505]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (505 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        54  (0.0131643); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.17s 00:00:00.49 Elapsed: 00:00:00.46
# Mc/sec: 1449.01
//
Query:       MMETSP1137-20121227|202_1  [L=72]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        37  (0.00901999); expected 82.0 (0.02)
Passed bias filter:                       33  (0.00804486); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.15s 00:00:00.28 Elapsed: 00:00:00.31
# Mc/sec: 306.56
//
Query:       MMETSP1137-20121227|204_1  [L=340]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (340 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        42  (0.0102389); expected 82.0 (0.02)
Passed bias filter:                       25  (0.00609459); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.14s 00:00:00.37 Elapsed: 00:00:00.41
# Mc/sec: 1094.54
//
Query:       MMETSP1137-20121227|205_1  [L=334]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.4e-16   57.1   0.1    4.6e-16   56.7   0.0    1.1  1  TIGR01963 PHB_DH: 3-hydroxybutyrate dehydrogenase
    1.2e-15   55.8   0.0    1.6e-15   55.3   0.0    1.1  1  TIGR01830 3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase
    1.1e-14   52.4   0.0    1.4e-14   52.0   0.0    1.1  1  TIGR01832 kduD: 2-deoxy-D-gluconate 3-dehydrogenase
      2e-12   45.0   3.8    2.2e-11   41.6   2.6    2.0  1  TIGR03971 SDR_subfam_1: oxidoreductase, SDR family
    4.3e-12   43.0   1.0    5.1e-12   42.8   0.7    1.0  1  TIGR02632 RhaD_aldol-ADH: rhamnulose-1-phosphate aldolase/alcohol dehydrogenase
    5.5e-11   40.1   2.5    7.4e-11   39.7   1.8    1.1  1  TIGR03206 benzo_BadH: 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase
    1.9e-10   38.7   0.0    2.5e-10   38.3   0.0    1.1  1  TIGR01829 AcAcCoA_reduct: acetoacetyl-CoA reductase
    1.6e-08   32.1   0.0    3.2e-08   31.1   0.0    1.4  1  TIGR02415 23BDH: acetoin reductases
    1.2e-06   25.9   0.9    2.1e-06   25.1   0.6    1.3  1  TIGR01831 fabG_rel: putative 3-oxoacyl-(acyl-carrier-protein) reductase
    2.1e-05   21.9   0.1    3.6e-05   21.1   0.1    1.3  1  TIGR01500 sepiapter_red: sepiapterin reductase
    0.00069   17.0   0.6    0.00095   16.5   0.4    1.1  1  TIGR02817 adh_fam_1: zinc-binding alcohol dehydrogenase family protein
     0.0019   15.6   0.1     0.0027   15.1   0.1    1.2  1  TIGR01289 LPOR: light-dependent protochlorophyllide reductase
     0.0082   13.0   0.7      0.012   12.5   0.5    1.2  1  TIGR02824 quinone_pig3: putative NAD(P)H quinone oxidoreductase, PIG3 family


Domain annotation for each model (and alignments):
>> TIGR01963  PHB_DH: 3-hydroxybutyrate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.7   0.0   1.5e-18   4.6e-16       2     174 ..      67     242 ..      66     249 .. 0.92

  Alignments for each domain:
  == domain 1    score: 56.7 bits;  conditional E-value: 1.5e-18
  TIGR01963   2 kvalvtGaasGiglaiakelaaaGak.vvvndleeeaaeaaakeleeaggevla.lkadvtkeeeiadlieavaaefgsldiLv.nnAGiqhvapieefptekfekiiavnltsafhtiraalpimkkqgwGriiniasvhglvasafKsaYvaaKHglvGltKvlAlEvAetgit 174
                +valvtGa+sG g+a   ela+ Ga+ v++++ +   ++++a+++e+agg+vl  ++ ++++++e++ li+ +aa++ ++  Lv + AG    + + e   ++    ++  l s++ ++ra lp++ k     +++  s  + v  a  +aY aa+ +l Gl  ++A +   t i+
  MMETSP1137-20121227|205_1  67 RVALVTGASSGAGAATCIELARRGAAgVILVGRDPGRLAETAQKVEAAGGTVLSvHSRELSDQAEVDALISDLAASAHGMPSLVfQCAGAGRWRSLTEMSSKEAVGCLDAPLISSMLLSRALLPHLVKLPCSAMVYAQSPVSRVVPAGCTAYAAARFALRGLVEAIAADCSGTSIR 242
                89**********************865999*******************999752789************99887766665555389********************************************************************************998888876 PP

>> TIGR01830  3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.3   0.0     5e-18   1.6e-15       1     176 [.      69     246 ..      69     252 .. 0.92

  Alignments for each domain:
  == domain 1    score: 55.3 bits;  conditional E-value: 5e-18
  TIGR01830   1 alvtGasrgiGkaiakklakegakvviterskeekaeelaeelkeagvkaaav.kldvsdeeevkelveeveeelgei.dilvnnAGitrDklllrmkeedwdevikvnLkgvfnvtkavlkkmikkrsGriinissvvgllGnagqanYaasKaGligltkslakElasrnitvnav 176
                alvtGas g G+a+  +la++ga  vi   ++  +++e+a+++++ag+++++v + ++sd++ev++l++++ ++++ + +++ + AG  r + l +m++++   +++  L +   +++a l +++k    +++   s v+ +  ag + Yaa++  l gl +++a +++  +i++  v
  MMETSP1137-20121227|205_1  69 ALVTGASSGAGAATCIELARRGAAGVILVGRDPGRLAETAQKVEAAGGTVLSVhSRELSDQAEVDALISDLAASAHGMpSLVFQCAGAGRWRSLTEMSSKEAVGCLDAPLISSMLLSRALLPHLVKLPCSAMVYAQSPVSRVVPAGCTAYAAARFALRGLVEAIAADCSGTSIRICEV 246
                79********************9988888899999**********998887651679***********99887766551666789*************************************************************************************99998655 PP

>> TIGR01832  kduD: 2-deoxy-D-gluconate 3-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.0   0.0   4.5e-17   1.4e-14       3     179 ..      64     244 ..      62     268 .. 0.86

  Alignments for each domain:
  == domain 1    score: 52.0 bits;  conditional E-value: 4.5e-17
  TIGR01832   3 leGkvalvtGantGlGqgiavglaeaGad.ivgvg..iselsetqekvealGrkflslk.adladeeaakalvdeaveeagkidilv.nnaGiirredavefsekdwddvlnvnlkavfllsqavakkllkqGrkgkiiniasllsfqGGirvpsytasksavaGltkllanewakkginvn 179
                ++G+valvtGa++G G + ++ la+ Ga  ++ vg     l et++kvea G ++ls++  +l+d+++++al+++ +++a  +  lv   aG  r     e+s k+    l+  l + +lls+a+  +l+k    + ++   s +s       ++y+a++ a+ Gl  ++a++ + ++i++ 
  MMETSP1137-20121227|205_1  64 VKGRVALVTGASSGAGAATCIELARRGAAgVILVGrdPGRLAETAQKVEAAGGTVLSVHsRELSDQAEVDALISDLAASAHGMPSLVfQCAGAGRWRSLTEMSSKEAVGCLDAPLISSMLLSRALLPHLVKLP-CSAMVYAQSPVSRVVPAGCTAYAAARFALRGLVEAIAADCSGTSIRIC 244
                79**********************97764355555116789************999986269*************9999988888873679****************************************99.6778889999999999999********************999998764 PP

>> TIGR03971  SDR_subfam_1: oxidoreductase, SDR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.6   2.6   6.8e-14   2.2e-11       2     194 ..      65     246 ..      64     261 .. 0.85

  Alignments for each domain:
  == domain 1    score: 41.6 bits;  conditional E-value: 6.8e-14
  TIGR03971   2 eGkvalitGaarGqGraeavrlaaeGadiiaidlceplsdvvtypaatredldetaklvealGrkvla.rkadvrkleelravvee.gveefGrldvvvanaGvlsygrafelseeqWdtvldvnlkGvWktvkavvPalierknGGsiiivssvaglkalpglahyaaakhGlvgltktlanelaeygirvnsi 194
                +G+val+tGa+ G G a  + la+ Ga  + + + ++              l+eta+ vea+G  vl+ +  ++ + +e+ a + + + +  G   +v   aG   + ++ e+s+++    ld  l       +a +P+l+       +   s v+ ++   g + yaaa++ l gl++++a + +   ir+  +
  MMETSP1137-20121227|205_1  65 KGRVALVTGASSGAGAATCIELARRGAAGVIL-VGRD-----------PGRLAETAQKVEAAGGTVLSvHSRELSDQAEVDALISDlAASAHGMPSLVFQCAGAGRWRSLTEMSSKEAVGCLDAPLISSMLLSRALLPHLVKLPCSAMVYAQSPVSRVV-PAGCTAYAAARFALRGLVEAIAADCSGTSIRICEV 246
                7*************************976543.2222...........35799***********99961556899999999999883556789999*********************************************999555555555555555.456788*************************9766 PP

>> TIGR02632  RhaD_aldol-ADH: rhamnulose-1-phosphate aldolase/alcohol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.8   0.7   1.6e-14   5.1e-12     400     598 ..      52     250 ..      17     273 .. 0.86

  Alignments for each domain:
  == domain 1    score: 42.8 bits;  conditional E-value: 1.6e-14
  TIGR02632 400 eaklrrmPkekelarrvalvtGgasGiGrevarrlvdeGah.vvladldaeaaeavaaelvdkfGadkavalk.ldvtdeeavkaafaeval.ayGGvdivvnnaGiavskpleeteleeWdlnldilatGyflvareaarllrkqglggnlvfiasknavvakknalaysaakaaeahlvrllaielaelgirvntvaPda 598
                + + rr+ +  ++ +rvalvtG++sG G ++++ l+ +Ga  v+l+  d  +++++a+++      +++++++  ++ d+ +v a + + a  a+G   +v + aG    + l e + +e    ld     + l++r     l k    + +v+  s  + v   + +ay+aa+ a   lv  +a++ + + ir+  v  + 
  MMETSP1137-20121227|205_1  52 LSQYRRLRRGLTVKGRVALVTGASSGAGAATCIELARRGAAgVILVGRDPGRLAETAQKVEAAG--GTVLSVHsRELSDQAEVDALISDLAAsAHGMPSLVFQCAGAGRWRSLTEMSSKEAVGCLDAPLISSMLLSRALLPHLVKLP-CSAMVYAQSPVSRVVPAGCTAYAAARFALRGLVEAIAADCSGTSIRICEVVLNE 250
                4567889999999**************************754999**************99444..456666416899********999665166667889999*********************************8888777654.4569*******************************************9887655 PP

>> TIGR03206  benzo_BadH: 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.7   1.8   2.4e-13   7.4e-11       1     177 [.      64     243 ..      64     266 .. 0.86

  Alignments for each domain:
  == domain 1    score: 39.7 bits;  conditional E-value: 2.4e-13
  TIGR03206   1 lkdkvaivtgggggiggaicrrfaeegakvavldlnaeaae..kvaaairekggkaeavav.ditdrasvdaavaa.aeealgpvdvlvnnagwdvlkpflktekaewerliainltgalymhhavlkgmverkagrivniasdaarvgssgeavyaackgglvafsktlarelarhgitv 177
                +k++va+vtg + g g+a+c  +a+ ga+  v+ + ++  +  + a+++ ++gg+  +v   +++d+a vda ++  a +a g   ++ + ag    +++++    e    +   l  ++ +  a+l+ +v+     +v   s  +rv  +g + yaa +  l  +  ++a + +  +i +
  MMETSP1137-20121227|205_1  64 VKGRVALVTGASSGAGAATCIELARRGAAG-VILVGRDPGRlaETAQKVEAAGGTVLSVHSrELSDQAEVDALISDlAASAHGMPSLVFQCAGAGRWRSLTEMSSKEAVGCLDAPLISSMLLSRALLPHLVKLPCSAMVYAQSPVSRVVPAGCTAYAAARFALRGLVEAIAADCSGTSIRI 243
                5899***********************984.4445666544227899*********9997538***********97255677888888899**********9999999999999***********************************************99999999999988887765 PP

>> TIGR01829  AcAcCoA_reduct: acetoacetyl-CoA reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.3   0.0   7.8e-13   2.5e-10       1     175 [.      67     243 ..      67     262 .. 0.86

  Alignments for each domain:
  == domain 1    score: 38.3 bits;  conditional E-value: 7.8e-13
  TIGR01829   1 rvalvtGglgGiGtaickrlakdGykvvanvapneerakewlqe.kevegfdvavvkadvssfeeakaavakvea.elGpvdvlvnnaGitrdavfkkmtkeqWeevidtnlnsvfnvtrpviegmlergfGriinissvnGlkGqfGqanysaakaGliGftkalaqegakkgvtv 175
                rvalvtG++ G G+a c +la+ G   v  v  +  r +e +q+ +++ g+ + v + ++s+  e  a ++++ a + G   ++  +aG  r   +  m++++    +d+ l s + + r ++  +++     ++   s       +G + y+aa+  l G+  a+a++ + +++ +
  MMETSP1137-20121227|205_1  67 RVALVTGASSGAGAATCIELARRGAAGVILVGRDPGRLAETAQKvEAAGGTVLSVHSRELSDQAEVDALISDLAAsAHGMPSLVFQCAGAGRWRSLTEMSSKEAVGCLDAPLISSMLLSRALLPHLVKLPCSAMVYAQSPVSRVVPAGCTAYAAARFALRGLVEAIAADCSGTSIRI 243
                8***********************9877777776666666655505555677789999*************99872578888999**************************************************99999999999**********************988776644 PP

>> TIGR02415  23BDH: acetoin reductases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.1   0.0     1e-10   3.2e-08       1     170 [.      67     238 ..      67     245 .. 0.89

  Alignments for each domain:
  == domain 1    score: 31.1 bits;  conditional E-value: 1e-10
  TIGR02415   1 kvalvtGaaqGiGkaiaerLakdGfa.vavadlneetaketakelkekgtkavavkl.dvsdkseveeaveq.aveklGeldvlvnnaGvalvtpileiteeeleklynvnvkgvlfGiqaaaekfkklkhkGkiinaasiagvegspelsaysstkfavrgltqtaakeLak 170
                +valvtGa+ G G a    La+ G a v+++  ++  ++eta++++++g+  + v++ ++sd++ev++++++ a++  G   ++   aG +   +++e++++e     +  + + +   +a   ++ kl     ++ a s  + +  +  +ay++++fa+rgl  + a + + 
  MMETSP1137-20121227|205_1  67 RVALVTGASSGAGAATCIELARRGAAgVILVGRDPGRLAETAQKVEAAGGTVLSVHSrELSDQAEVDALISDlAASAHGMPSLVFQCAGAGRWRSLTEMSSKEAVGCLDAPLISSMLLSRALLPHLVKLPCS-AMVYAQSPVSRVVPAGCTAYAAARFALRGLVEAIAADCSG 238
                79**********************874777888899**************999886538***********76377788888888899*************99999999999999999999999999999876.578899999999999*****************99988765 PP

>> TIGR01831  fabG_rel: putative 3-oxoacyl-(acyl-carrier-protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.1   0.6   6.5e-09   2.1e-06       2     173 ..      70     242 ..      69     258 .. 0.88

  Alignments for each domain:
  == domain 1    score: 25.1 bits;  conditional E-value: 6.5e-09
  TIGR01831   2 lvtgasrgigraialklaadgfeiavhyrsdradaeesvaairaqggna.rllkfdvadrvavrevlea.diaehgayygvvlnagiardaafpalseedwdavietnldgfynvihplvmpmirarkggriitlasvsgvmgnrgqvnysaakagligatkalavelakrkit 173
                lvtgas g g a  ++la  g    + + +d     e++++++a gg++ ++ + +++d+ +v +++     ++hg    v  +ag  r  ++  +s ++    +++ l +   + + l+  ++++     + + + vs v+   g   y+aa+  l g   a+a + +   i 
  MMETSP1137-20121227|205_1  70 LVTGASSGAGAATCIELARRGAAGVILVGRDPGRLAETAQKVEAAGGTVlSVHSRELSDQAEVDALISDlAASAHGMPSLVFQCAGAGRWRSLTEMSSKEAVGCLDAPLISSMLLSRALLPHLVKLPCSAMVYAQSPVSRVVP-AGCTAYAAARFALRGLVEAIAADCSGTSIR 242
                9**********************9999*******************99835667899999999887754145579999999*****************************999998988888999999999999999**9986.69999**********999999887766655 PP

>> TIGR01500  sepiapter_red: sepiapterin reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1   0.1   1.1e-07   3.6e-05       2      80 ..      68     142 ..      67     156 .. 0.90

  Alignments for each domain:
  == domain 1    score: 21.1 bits;  conditional E-value: 1.1e-07
  TIGR01500   2 lllvtGasrGfGrelaqelakrlkaegsvlvLlaRndeaLkeskaeieaevsalsvdlvsldleaakdvedllkalees 80 
                ++lvtGas G G +   ela+r       ++L++R+   L e+ +++ea   + ++   s +l+ +++v+ l+  l +s
  MMETSP1137-20121227|205_1  68 VALVTGASSGAGAATCIELARR---GAAGVILVGRDPGRLAETAQKVEA-AGGTVLSVHSRELSDQAEVDALISDLAAS 142
                79******************94...45568999***************9.8999****************999888776 PP

>> TIGR02817  adh_fam_1: zinc-binding alcohol dehydrogenase family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.4     3e-06   0.00095     118     210 ..      35     131 ..      24     147 .. 0.82

  Alignments for each domain:
  == domain 1    score: 16.5 bits;  conditional E-value: 3e-06
  TIGR02817 118 faeaaalPltaitawellfdrlkieedvagekralliiGaaGGvgs.iliqlarqlte.ltviat..asraesqewvkelGahavidhskplkaqle 210
                  ++a++  +a+++w ll    +++++ + + r+ l++Ga+ G g+   i lar+ +  + +++   +  ae+++ v+  G  ++  hs++l++q e
  MMETSP1137-20121227|205_1  35 SRQSASVACAALASWLLLSQYRRLRRGLTVKGRVALVTGASSGAGAaTCIELARRGAAgVILVGRdpGRLAETAQKVEAAGGTVLSVHSRELSDQAE 131
                5688999999*********99999*****************999872579999986541444554224569*********************98854 PP

>> TIGR01289  LPOR: light-dependent protochlorophyllide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.1   8.4e-06    0.0027       5      88 ..      68     152 ..      64     194 .. 0.82

  Alignments for each domain:
  == domain 1    score: 15.1 bits;  conditional E-value: 8.4e-06
  TIGR01289   5 tviitgassglglaaakalvekgkwhvvmacrdlekaekaakslglpkdsy.tilkldlasldsvrkfveqfresgrsldalvcn 88 
                 +++tgassg g a+   l+ +g   v++  rd  +  ++a+++  + ++  ++   +l+    v  +++++ +s + + +lv +
  MMETSP1137-20121227|205_1  68 VALVTGASSGAGAATCIELARRGAAGVILVGRDPGRLAETAQKVEAAGGTVlSVHSRELSDQAEVDALISDLAASAHGMPSLVFQ 152
                5789*****************************9999999999887766541555567888888888888888887777777744 PP

>> TIGR02824  quinone_pig3: putative NAD(P)H quinone oxidoreductase, PIG3 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.5   0.5   3.7e-05     0.012     113     177 ..      34     104 ..      24     132 .. 0.78

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 3.7e-05
  TIGR02824 113 slveaAalpEtffTvwsnlfelaklka.....getvLihggasGiGt.taiqlakalgakvlvtagsdekl 177
                s  ++A+++  ++  w  l +  +l++     g  +L+ g++sG G+ t i la++ +a v+   ++  +l
  MMETSP1137-20121227|205_1  34 SSRQSASVACAALASWLLLSQYRRLRRgltvkGRVALVTGASSGAGAaTCIELARRGAAGVILVGRDPGRL 104
                567889999999999999999888887455557888**********735799***9998888765555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (334 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       177  (0.0431497); expected 82.0 (0.02)
Passed bias filter:                      141  (0.0343735); expected 82.0 (0.02)
Passed Vit filter:                        26  (0.00633837); expected 4.1 (0.001)
Passed Fwd filter:                        13  (0.00316919); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.37u 0.14s 00:00:00.51 Elapsed: 00:00:00.66
# Mc/sec: 667.94
//
Query:       MMETSP1137-20121227|206_1  [L=483]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.7e-11   41.6   0.0    1.7e-11   41.6   0.0    2.0  2  TIGR01622 SF-CC1: splicing factor, CC1-like family
    4.3e-09   33.9   0.0    2.6e-08   31.3   0.0    1.7  1  TIGR01628 PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family
      6e-05   20.1   0.2     0.0054   13.7   0.2    2.1  2  TIGR00435 cysS: cysteine--tRNA ligase
    0.00014   18.7   0.0    0.00022   18.0   0.0    1.2  1  TIGR01648 hnRNP-R-Q: hnRNP-R, Q splicing factor family
    0.00077   15.9   0.0     0.0038   13.6   0.0    1.9  1  TIGR01642 U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor
  ------ inclusion threshold ------
      0.014   12.8   0.0      0.042   11.2   0.0    1.4  1  TIGR01661 ELAV_HUD_SF: ELAV/HuD family splicing factor
      0.044   11.2   0.0      0.071   10.5   0.0    1.2  1  TIGR01659 sex-lethal: sex-lethal family splicing factor


Domain annotation for each model (and alignments):
>> TIGR01622  SF-CC1: splicing factor, CC1-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.6   0.0   2.9e-14   1.7e-11     214     312 ..     108     207 ..      75     296 .. 0.83
   2 ?   -2.0   1.1       0.5   2.9e+02      82     127 ..     405     453 ..     393     473 .. 0.63

  Alignments for each domain:
  == domain 1    score: 41.6 bits;  conditional E-value: 2.9e-14
  TIGR01622 214 pnsiadlkLYvGnlhfnitEqeLrqiFepFGeielvqlqkDpetGr..skGyGFiqFsdaeeakeAleklNGlelAGReikvglasDvteesdaslaskfe 312
                 +s+    +YvGnl   ++E +Lr++Fe  G+ie v l      Gr  s  +  + Fs ae a +A+ +l Gl + G  ++v  ++  t   d+ + ++ +
  MMETSP1137-20121227|206_1 108 GDSLNSAEVYVGNLPAYVSESMLRELFEDCGRIEEVALSERIAEGRgaSGSFAHVSFSSAEAASRAM-RLSGLAVDGYRLRVETVKGETASGDSRAFQRPQ 207
                45888899******************************9876555432888**************97.79**************77777766664444443 PP

  == domain 2    score: -2.0 bits;  conditional E-value: 0.5
  TIGR01622  82 r.rredevrrkrkeredrrerrek..eerlkeelteeeRDartvfvlql 127
                r rr +++ r ++  ++r++  ++  + + ke+l e+e +++ v+  ++
  MMETSP1137-20121227|206_1 405 RtRRAERTARPSQGGGSRQQSSRPagRRGAKEPLSEAEIESQLVLREEM 453
                3255555555555555555555554455578888888877776665555 PP

>> TIGR01628  PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.3   0.0   4.4e-11   2.6e-08     103     236 ..      32     174 ..      28     176 .. 0.57

  Alignments for each domain:
  == domain 1    score: 31.3 bits;  conditional E-value: 4.4e-11
  TIGR01628 103 kaLfdtFskfGnilsckv..atdeeGkSkgYgfvhfedeesAkeAiek.lNgvllndkev.yvgkfikksere..atkekkftNlYvKnlddsvtedklrelFakfGeitSaivkk...deknrkrgfafvnyekaedAkkAv 236
                ka+fd+ s+fG+++ ++     de+G    +      de sA++Ai   l +   +++     +   ++      a  + +   +Yv nl++ v+e  lrelF + G+i  ++  +   + ++ + +fa+v++ +ae+A +A+
  MMETSP1137-20121227|206_1  32 KAVFDLLSTFGEVICIRGfpSNDEDGSEPDWLCAIMADERSADAAIGShLLSSSPAACSDaDAAALGARCASGfaAGDSLNSAEVYVGNLPAYVSESMLRELFEDCGRIEEVALSEriaEGRGASGSFAHVSFSSAEAASRAM 174
                67777777777777776422467777666777777777777777774323333333332202333333333324355566667777777777777777777777777777766654111344556667777777777777776 PP

>> TIGR00435  cysS: cysteine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.2   0.0    0.0071       4.1     352     460 ..     237     387 ..     212     391 .. 0.75
   2 !   13.7   0.2   9.2e-06    0.0054     417     457 ..     439     479 ..     421     482 .. 0.86

  Alignments for each domain:
  == domain 1    score: 4.2 bits;  conditional E-value: 0.0071
  TIGR00435 352 Ealdddlntaealavlselvkksnlkeiskakaallieelialesvlekllglpsksvqagsndd..elgeledliee..........................................rsearkkkelkkaDkiRdellkkgivLeDtpnG 460
                E +dd +n++e  +   e+ +++     ++++a+l +e+  a+e+ + + ++++++ +qa +  +  +lge+ +++ e                                          r+  r+++ +++aD++ ++l   g++ +D ++G
  MMETSP1137-20121227|206_1 237 EVFDDGFNMPEVRTRAREVGEETG-FVRESRTADLAVERAEAVEDDVPQREKTEEEVEQAAEAAGllSLGEIVEMVSExdrpdpdewalvggdtrpqveeerplpdgllykkeigemllrREGFRQRRMFDEADAVLEDLFASGVT-VDFKRG 387
                577777777777777777777776.45556667777777777777777777777777777666666677778787777888888888888888888888888888888888888888887999999999**************999.555555 PP

  == domain 2    score: 13.7 bits;  conditional E-value: 9.2e-06
  TIGR00435 417 elgeledlieersearkkkelkkaDkiRdellkkgivLeDt 457
                +++e+e+ +  r+e rk++++++aD++Rd l ++ i ++D+
  MMETSP1137-20121227|206_1 439 SEAEIESQLVLREEMRKARDFEAADAVRDLLWDLDIKVDDR 479
                78899999999**************************9998 PP

>> TIGR01648  hnRNP-R-Q: hnRNP-R, Q splicing factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.0   3.7e-07   0.00022      53     128 ..     108     190 ..     100     203 .. 0.77

  Alignments for each domain:
  == domain 1    score: 18.0 bits;  conditional E-value: 3.7e-07
  TIGR01648  53 aqPerGcevfvGkiPrdlyedelvPlfekvGkiyelrlmmd...ldGknrGyafvtfcnkeeakeavke....lnnyeirpGr 128
                 +    +ev+vG +P  + e  l  lfe  G+i e+ l        G    +a v f+  e+a +a++     ++ y +r   
  MMETSP1137-20121227|206_1 108 GDSLNSAEVYVGNLPAYVSESMLRELFEDCGRIEEVALSERiaeGRGASGSFAHVSFSSAEAASRAMRLsglaVDGYRLRVET 190
                5556679*****************************997663114566778****************9633335677776655 PP

>> TIGR01642  U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   0.0   6.4e-06    0.0038     297     370 ..     114     188 ..      97     197 .. 0.71

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 6.4e-06
  TIGR01642 297 dklyignLPldlkddqvkeLLesFGdLkaFnliKdlatG..lsKGyaFceykdssvtdlAiaaLnGiklgdkkLnv 370
                  +y+gnLP ++ +  ++eL e+ G +    l   +a+G   s  +a + +  +  +  A+  L G+ + + +L v
  MMETSP1137-20121227|206_1 114 AEVYVGNLPAYVSESMLRELFEDCGRIEEVALSERIAEGrgASGSFAHVSFSSAEAASRAMR-LSGLAVDGYRLRV 188
                45788888888888888888888888888888888877522566677777777766666653.6666666666655 PP

>> TIGR01661  ELAV_HUD_SF: ELAV/HuD family splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   7.1e-05     0.042       7      81 ..     117     197 ..     111     205 .. 0.81

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 7.1e-05
  TIGR01661   7 ivnylPqtmtqeeirslftsiGeiescklvrdkvt..GqslGyGfvnyvreedaekavn....slnGlrlqnktikvsyar 81 
                 v  lP  +++  +r lf   G ie + l     +  G s  +  v +   e a +a+     +++G rl+  t+k   a 
  MMETSP1137-20121227|206_1 117 YVGNLPAYVSESMLRELFEDCGRIEEVALSERIAEgrGASGSFAHVSFSSAEAASRAMRlsglAVDGYRLRVETVKGETAS 197
                5778999********************997655544478899999************964444679999999999977765 PP

>> TIGR01659  sex-lethal: sex-lethal family splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   0.00012     0.071      72     182 ..      74     189 ..      50     199 .. 0.74

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 0.00012
  TIGR01659  72 aatlgs..vgnlanaastnslnslgsggsdd..ndtrasgtnlivnylpqdmtdrelyalfrtigpintcrimrdyk..tgysfgyafvdfaseadsqraikslngitvrnkrlkvs 182
                 a++gs  ++  + a+s+    +lg+  + +   + + +++++ v  lp  +++  l  lf   g i+   +        g s  +a v f+s   + ra++ l g++v   rl+v 
  MMETSP1137-20121227|206_1  74 DAAIGShlLSSSPAACSDADAAALGARCASGfaAGDSLNSAEVYVGNLPAYVSESMLRELFEDCGRIEEVALSERIAegRGASGSFAHVSFSSAEAASRAMR-LSGLAVDGYRLRVE 189
                555666544444455555555566665555533344456678899999999999999999999999999888766541156788899999999999999986.89999999999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (483 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        87  (0.0212092); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.43u 0.16s 00:00:00.59 Elapsed: 00:00:00.89
# Mc/sec: 716.30
//
Query:       MMETSP1137-20121227|207_1  [L=423]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (423 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       302  (0.0736226); expected 82.0 (0.02)
Passed bias filter:                      101  (0.0246221); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.13s 00:00:00.47 Elapsed: 00:00:00.45
# Mc/sec: 1240.70
//
Query:       MMETSP1137-20121227|208_1  [L=226]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (226 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        40  (0.00975134); expected 82.0 (0.02)
Passed bias filter:                       39  (0.00950756); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.15s 00:00:00.35 Elapsed: 00:00:00.33
# Mc/sec: 903.93
//
Query:       MMETSP1137-20121227|209_1  [L=263]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      6e-13   46.8   0.3    9.5e-13   46.2   0.2    1.3  1  TIGR00112 proC: pyrroline-5-carboxylate reductase


Domain annotation for each model (and alignments):
>> TIGR00112  proC: pyrroline-5-carboxylate reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.2   0.2   2.3e-16   9.5e-13       9     169 ..       1     155 [.       1     161 [. 0.89

  Alignments for each domain:
  == domain 1    score: 46.2 bits;  conditional E-value: 2.3e-16
  TIGR00112   9 mgeallsgllkkgakakkeilvierseeklaalakelg..vevtsdaeeavkeadvvllavKPqdleevlaelkseektkeklliSilAGvtiekleqlleae..krvvRvmPNtaakvgagvtaiaassevseeqkelveellkavGkvveve.eklldavtals 169
                m +al++g     a+ ++ + v  r++ k+ al++e+   v+v+++++++v+++dvv+++v P+ +e+ +++lk    + ++++iS++   ++e+l++++ +   ++vvR++P  +++  +g+t+++         + l+ ++++a+G+ v ve e++++ ++ +s
  MMETSP1137-20121227|209_1   1 MSAALVRGXCTLPAP-PSVVTVSPRNARKASALFEEFPqrVRVAKSNQQVVDQSDVVFIGVLPAIAEDTVRSLKF---KPTHTVISLVSTAQMEALREWCVNVpaSNVVRAIPLPPVAKHKGATVLTPX-------HPLALAIFEALGTPVAVEsEAEMKKLMTIS 155
                778888887775444.677777788899999999999767999****************************9998...5789*****************98668899*******************998.......5789*******************9999887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (263 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       165  (0.0402243); expected 82.0 (0.02)
Passed bias filter:                      152  (0.0370551); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.25u 0.17s 00:00:00.42 Elapsed: 00:00:00.44
# Mc/sec: 788.93
//
Query:       MMETSP1137-20121227|210_1  [L=709]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.4e-36  121.5   1.5    3.7e-18   63.5   0.6    3.8  3  TIGR03873 F420-0_ABC_ATP: proposed F420-0 ABC transporter, ATP-binding protein
    3.4e-34  116.5   0.7    4.4e-11   40.4   0.0    4.1  4  TIGR02142 modC_ABC: molybdate ABC transporter, ATP-binding protein
    6.9e-34  115.5   0.2    1.7e-15   54.8   0.0    3.4  3  TIGR02857 CydD: thiol reductant ABC exporter, CydD subunit
    2.3e-32  110.0   4.2    9.9e-17   58.9   0.1    3.7  3  TIGR03608 L_ocin_972_ABC: putative bacteriocin export ABC transporter, lactococcin 972 group
    3.6e-32  109.2   3.5    2.4e-18   64.1   0.2    3.5  3  TIGR01166 cbiO: cobalt ABC transporter, ATP-binding protein
    9.4e-32  108.3   7.6    6.5e-14   49.7   0.8    4.1  3  TIGR01188 drrA: daunorubicin resistance ABC transporter, ATP-binding protein
    5.9e-31  105.8   1.8    2.4e-12   44.8   0.0    4.1  4  TIGR03411 urea_trans_UrtD: urea ABC transporter, ATP-binding protein UrtD
      7e-31  105.2   1.1    5.7e-10   36.2   0.0    4.1  4  TIGR03719 ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family
    1.6e-30  104.2   1.5    1.3e-12   45.4   0.2    4.0  3  TIGR02315 ABC_phnC: phosphonate ABC transporter, ATP-binding protein
    1.8e-29  100.7   3.5    4.3e-14   50.5   0.7    4.0  2  TIGR01189 ccmA: heme ABC exporter, ATP-binding protein CcmA
    8.9e-29   98.6   0.0    1.4e-10   38.8   0.0    4.1  4  TIGR03265 PhnT2: putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein
    3.4e-28   96.6   0.1    2.3e-14   51.4   0.0    3.3  3  TIGR02673 FtsE: cell division ATP-binding protein FtsE
      1e-27   95.0   0.2    1.7e-10   38.6   0.0    4.1  4  TIGR00968 3a0106s01: sulfate ABC transporter, ATP-binding protein
    6.9e-27   92.2   0.9    1.2e-12   45.3   0.1    4.0  3  TIGR03258 PhnT: 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT
    1.6e-26   90.6   0.6    2.6e-07   27.1   0.0    4.0  4  TIGR03375 type_I_sec_LssB: type I secretion system ATPase
    1.9e-26   90.7   2.7    7.2e-15   52.8   0.0    3.3  3  TIGR02770 nickel_nikD: nickel import ATP-binding protein NikD
    5.1e-26   89.5   2.6    5.1e-13   47.0   0.2    3.9  3  TIGR01184 ntrCD: nitrate ABC transporter, ATP-binding proteins C and D
    1.3e-25   88.1   0.2      7e-08   30.1   0.0    4.1  4  TIGR02211 LolD_lipo_ex: lipoprotein releasing system, ATP-binding protein
    1.4e-25   87.8   0.2    2.1e-08   31.5   0.0    4.0  4  TIGR01187 potA: polyamine ABC transporter, ATP-binding protein
    1.5e-25   88.1   1.0    5.9e-11   40.3   0.1    4.0  3  TIGR03771 anch_rpt_ABC: anchored repeat-type ABC transporter, ATP-binding subunit
    1.5e-25   87.9   1.5      9e-11   39.6   0.2    4.1  3  TIGR01277 thiQ: thiamine ABC transporter, ATP-binding protein
    9.2e-25   85.4   0.6    1.8e-13   48.4   0.1    3.4  3  TIGR02769 nickel_nikE: nickel import ATP-binding protein NikE
    2.7e-24   83.8   0.6    9.3e-10   36.3   0.0    4.0  4  TIGR02982 heterocyst_DevA: ABC exporter ATP-binding subunit, DevA family
    3.8e-24   83.0   0.7    1.9e-07   27.9   0.0    4.1  4  TIGR02868 CydC: thiol reductant ABC exporter, CydC subunit
    1.6e-23   81.4   0.1    7.2e-13   46.6   0.0    3.5  3  TIGR00960 3a0501s02: type II secretory pathway family protein
    1.2e-22   78.3   0.5    1.4e-06   25.8   0.0    4.2  4  TIGR03864 PQQ_ABC_ATP: ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system
    2.4e-22   77.3   2.6    9.5e-08   29.5   0.0    4.2  4  TIGR00972 3a0107s01c2: phosphate ABC transporter, ATP-binding protein
    3.3e-21   73.6   0.2    8.7e-05   19.9   0.0    4.1  4  TIGR03410 urea_trans_UrtE: urea ABC transporter, ATP-binding protein UrtE
    1.1e-20   71.5   0.4    1.6e-10   38.0   0.0    3.3  3  TIGR03269 met_CoM_red_A2: methyl coenzyme M reductase system, component A2
    6.5e-20   69.6   7.3    2.1e-12   45.0   0.4    3.9  2  TIGR03740 galliderm_ABC: lantibiotic protection ABC transporter, ATP-binding subunit
    1.5e-19   68.2   7.9    1.1e-08   32.4   0.0    3.8  3  TIGR01186 proV: glycine betaine/L-proline transport ATP binding subunit
      2e-19   67.6   0.1    3.3e-08   30.7   0.0    3.7  3  TIGR01288 nodI: nodulation ABC transporter NodI
    3.4e-19   66.6   0.3    7.8e-06   22.5   0.0    4.0  4  TIGR03797 NHLM_micro_ABC2: NHLM bacteriocin system ABC transporter, ATP-binding protein
    1.3e-18   64.8   0.3    1.2e-07   28.6   0.1    3.5  3  TIGR02204 MsbA_rel: ABC transporter, permease/ATP-binding protein
    1.6e-18   64.6   3.6    6.6e-08   29.7   0.0    3.9  4  TIGR03415 ABC_choXWV_ATP: choline ABC transporter, ATP-binding protein
    2.9e-18   64.2   2.9    1.9e-08   32.0   0.4    3.8  3  TIGR03522 GldA_ABC_ATP: gliding motility-associated ABC transporter ATP-binding subunit GldA
    3.3e-18   63.4   0.1    6.6e-09   32.7   0.0    3.3  3  TIGR00955 3a01204: pigment precursor permease
    4.7e-18   63.3   0.0    5.9e-05   20.5   0.0    4.2  4  TIGR02324 CP_lyasePhnL: phosphonate C-P lyase system protein PhnL
    6.1e-18   62.8   0.5    2.3e-08   31.4   0.0    4.1  4  TIGR03005 ectoine_ehuA: ectoine/hydroxyectoine ABC transporter, ATP-binding protein EhuA
    6.8e-18   62.3   0.1    1.8e-07   27.8   0.0    3.4  3  TIGR02203 MsbA_lipidA: lipid A export permease/ATP-binding protein MsbA
    1.2e-17   61.5   0.0    4.1e-08   30.0   0.0    3.2  3  TIGR01193 bacteriocin_ABC: ABC-type bacteriocin transporter
    1.4e-17   61.3   1.6    6.9e-07   26.0   0.5    4.0  3  TIGR01842 type_I_sec_PrtD: type I secretion system ATPase
    1.9e-16   57.6   0.0    1.2e-08   31.8   0.0    3.1  3  TIGR01192 chvA: glucan exporter ATP-binding protein
    1.6e-15   54.2   0.2    1.5e-05   21.2   0.0    4.0  3  TIGR03796 NHLM_micro_ABC1: NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein
    1.2e-14   51.5   1.2    0.00013   18.4   0.0    4.1  4  TIGR02633 xylG: D-xylose ABC transporter, ATP-binding protein
    1.6e-14   51.7   4.0      3e-09   34.5   0.2    3.6  3  TIGR01978 sufC: FeS assembly ATPase SufC
    1.7e-14   50.9   0.3    5.2e-09   32.8   0.0    3.2  3  TIGR01846 type_I_sec_HlyB: type I secretion system ATPase
    4.6e-13   47.0   0.0     0.0013   16.0   0.0    4.1  4  TIGR02323 CP_lyasePhnK: phosphonate C-P lyase system protein PhnK
    4.9e-12   42.7   0.1    1.7e-05   21.1   0.0    2.1  2  TIGR00630 uvra: excinuclease ABC subunit A
    8.7e-11   38.6   0.5     0.0015   14.7   0.0    4.0  4  TIGR00958 3a01208: antigen peptide transporter 2
    1.7e-10   38.3   0.1      0.013   12.3   0.0    3.8  4  TIGR02314 ABC_MetN: D-methionine ABC transporter, ATP-binding protein
    5.5e-10   35.3   0.2      0.019   10.3   0.0    4.0  4  TIGR00956 3a01205: pleiotropic drug resistance family protein
    2.7e-09   32.9   0.3    5.6e-05   18.6   0.0    2.9  3  TIGR01271 CFTR_protein: cystic fibrosis transmembrane conductor regulator (CFTR)
    8.7e-09   30.6   1.1     0.0097   10.5   0.1    3.4  3  TIGR01257 rim_protein: rim ABC transporter
    1.2e-08   30.8   0.1    5.9e-05   18.5   0.0    2.2  2  TIGR00957 MRP_assoc_pro: multi drug resistance-associated protein (MRP)
    3.9e-08   30.1   0.2     0.0095   12.3   0.0    3.3  3  TIGR01194 cyc_pep_trnsptr: cyclic peptide transporter
    1.6e-06   25.6   8.6    3.7e-06   24.4   6.0    1.5  1  TIGR01944 rnfB: electron transport complex, RnfABCDGE type, B subunit
    4.4e-06   24.0   0.3     0.0034   14.5   0.0    2.3  2  TIGR00064 ftsY: signal recognition particle-docking protein FtsY
    3.2e-05   21.8   3.6    5.9e-05   21.0   2.5    1.4  1  TIGR02951 DMSO_dmsB: dimethylsulfoxide reductase, chain B
    3.9e-05   21.5   8.9    7.8e-05   20.6   6.2    1.4  1  TIGR02179 PorD_KorD: 2-oxoacid:acceptor oxidoreductase, delta subunit, pyruvate/2-ketoisovalerate family
    4.3e-05   20.9   0.3    4.3e-05   20.9   0.2    2.3  1  TIGR01971 NuoI: NADH-quinone oxidoreductase, chain I
    4.8e-05   20.0   8.7    7.9e-05   19.3   6.0    1.2  1  TIGR04105 FeFe_hydrog_B1: [FeFe] hydrogenase, group B1/B3
    0.00088   16.1   7.3     0.0014   15.4   5.1    1.2  1  TIGR02512 FeFe_hydrog_A: [FeFe] hydrogenase, group A
      0.002   15.1   3.2     0.0035   14.3   2.2    1.3  1  TIGR01582 FDH-beta: formate dehydrogenase, beta subunit
      0.002   16.0   0.9       0.91    7.3   0.1    2.5  2  TIGR03499 FlhF: flagellar biosynthesis protein FlhF
     0.0021   16.0   0.1     0.0021   16.0   0.1    2.4  2  TIGR02936 fdxN_nitrog: ferredoxin III, nif-specific
     0.0021   14.4   1.7       0.52    6.5   0.0    3.1  2  TIGR00954 3a01203: peroxysomal long chain fatty acyl transporter
     0.0047   14.0   0.0      0.094    9.8   0.0    2.2  2  TIGR02397 dnaX_nterm: DNA polymerase III, subunit gamma and tau
     0.0049   14.5   1.3     0.0091   13.6   0.9    1.4  1  TIGR03294 FrhG: coenzyme F420 hydrogenase, subunit gamma
     0.0054   14.8   0.1      0.014   13.5   0.1    1.6  1  TIGR03048 PS_I_psaC: photosystem I iron-sulfur protein PsaC
     0.0057   14.1   0.4     0.0057   14.1   0.3    2.2  2  TIGR00397 mauM_napG: MauM/NapG family ferredoxin-type protein
     0.0075   13.7   0.4      0.014   12.8   0.3    1.4  1  TIGR00403 ndhI: NADH-plastoquinone oxidoreductase, I subunit
     0.0086   13.2   8.1      0.016   12.3   5.6    1.4  1  TIGR02700 flavo_MJ0208: archaeoflavoprotein, MJ0208 family
      0.009   12.2  10.4      0.014   11.6   7.2    1.2  1  TIGR03336 IOR_alpha: indolepyruvate ferredoxin oxidoreductase, alpha subunit
  ------ inclusion threshold ------
      0.013   10.9   0.4      0.028    9.9   0.1    1.6  2  TIGR02169 SMC_prok_A: chromosome segregation protein SMC
      0.014   11.7   0.0       0.14    8.4   0.0    2.0  2  TIGR00602 rad24: checkpoint protein rad24
       0.02   12.6   4.1      0.039   11.7   2.8    1.4  1  TIGR02060 aprB: adenylylsulfate reductase, beta subunit
      0.037   10.3   6.2      0.061    9.6   4.3    1.2  1  TIGR03287 methan_mark_16: putative methanogenesis marker 16 metalloprotein
      0.042    9.4   3.8      0.059    8.9   2.7    1.2  1  TIGR00314 cdhA: CO dehydrogenase/acetyl-CoA synthase complex, epsilon subunit
      0.051   10.4   6.0      0.083    9.7   4.2    1.2  1  TIGR02912 sulfite_red_C: sulfite reductase, subunit C
       0.36    8.5   3.5        1.4    6.5   0.2    2.6  2  TIGR00152 TIGR00152: dephospho-CoA kinase
       0.37    7.1   6.7       0.85    5.9   4.2    1.8  2  TIGR01945 rnfC: electron transport complex, RnfABCDGE type, C subunit
       0.44    7.8   9.3       0.83    6.9   6.5    1.4  1  TIGR02163 napH_: ferredoxin-type protein, NapH/MauN family
        1.2    6.3   8.6        2.1    5.5   5.9    1.3  1  TIGR04041 activase_YjjW: glycine radical enzyme activase, YjjW family
        2.2    4.2   5.0       0.25    7.3   0.2    1.7  2  TIGR00929 VirB4_CagE: type IV secretion/conjugal transfer ATPase, VirB4 family


Domain annotation for each model (and alignments):
>> TIGR03873  F420-0_ABC_ATP: proposed F420-0 ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.5   0.6   7.7e-20   3.7e-18      26     210 ..     111     298 ..     106     304 .. 0.79
   2 !   13.1   0.0   0.00019    0.0091      29      54 ..     385     410 ..     371     419 .. 0.83
   3 !   39.9   0.0   1.3e-12   6.2e-11     120     212 ..     457     550 ..     443     566 .. 0.88

  Alignments for each domain:
  == domain 1    score: 63.5 bits;  conditional E-value: 7.7e-20
  TIGR03873  26 aGaltgllGPnGsGkstllrllaGllapdaGev..dlagadlkalsrrararr..valveqdsdaevplsvrdvvalGriPhrslfaadsdedaevvdralarvelssladrdlstlsGGerqrvhlaralaqePklllldePtnhldvsaqlellalvrelaaegvtvvvalhdlnlaasvcdhvvvl 210
                aG++ gl+G nG Gkst l++laG  +p+ G+    ++ +++ a  r +  ++    ++e d +a ++ +  d +        + +  + +++ +++ +a+ + +l+ + dr+++ lsGGe qr  +   l q+  + ++deP  +ldv  +l+  +++r+l + ++ v+   hdl+    ++d +  l
  MMETSP1137-20121227|210_1 111 AGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFenPPDWQEILAHFRGSELQNyfTKILEDDMKAIIKPQYVDHIPKAVKGKVGEILKK-KDERDAITEAVDTLDLHPVFDREVDKLSGGELQRFAIGVVLVQKADVYMFDEPSSYLDVMQRLKAARAIRSLLQINTYVITVEHDLSVLDYLSDFICCL 298
                79******************************943345556655555443333114566776666665555555544444444444444.455667778999************************************************************999999999*****9988888877665 PP

  == domain 2    score: 13.1 bits;  conditional E-value: 0.00019
  TIGR03873  29 ltgllGPnGsGkstllrllaGllapd 54 
                +  +lG nG+Gk+t++r+laG++++d
  MMETSP1137-20121227|210_1 385 ILVMLGQNGTGKTTFIRMLAGMMNSD 410
                44589*****************9876 PP

  == domain 3    score: 39.9 bits;  conditional E-value: 1.3e-12
  TIGR03873 120 ralarvelssladrdlstlsGGerqrvhlaralaqePklllldePtnhldvsaqlellalvrela.aegvtvvvalhdlnlaasvcdhvvvldg 212
                 ++  + ++ l d++++ lsGGe qrv l  al     + l+deP  +ld + ++   ++++  + + + t  +  hd+ +a+ ++d+v+v +g
  MMETSP1137-20121227|210_1 457 DVMKPMLMEPLMDQEVKYLSGGELQRVALVIALGTPADIYLIDEPSAYLDSEQRITAAKVIKRFImHAKKTGFIVEHDFIMATYLADRVIVYEG 550
                55666789999**********************************************99999876477899999*****************876 PP

>> TIGR02142  modC_ABC: molybdate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.9   0.0    0.0017     0.082      22      54 ..     111     143 ..      91     151 .. 0.84
   2 !   39.7   0.0   1.5e-12   7.4e-11     111     203 ..     205     296 ..     190     300 .. 0.88
   3 !   21.5   0.0   5.2e-07   2.5e-05       5      50 ..     364     410 ..     362     420 .. 0.90
   4 !   40.4   0.0     9e-13   4.4e-11     114     206 ..     457     549 ..     436     570 .. 0.91

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 0.0017
  TIGR02142  22 gkgvtalFGrsGsGktslirliaGLtrpdegei 54 
                + +v +l G+ G Gk++ ++++aG ++p+ g+ 
  MMETSP1137-20121227|210_1 111 AGQVLGLVGTNGIGKSTALKILAGKQKPNLGRF 143
                44789***********************99986 PP

  == domain 2    score: 39.7 bits;  conditional E-value: 1.5e-12
  TIGR02142 111 seekvielLgiehLleRlpgkLsGGekqRvaigRAlLssPeLLlmDePLaaLDekrkkeilPyLerlsaelkiPilyvsHsldevarladrvv 203
                   + ++ L ++++ +R++ kLsGGe qR aig  l+ + ++ ++DeP + LD  ++ +    +++l + ++  ++ v H+l+ +  l+d + 
  MMETSP1137-20121227|210_1 205 AITEAVDTLDLHPVFDREVDKLSGGELQRFAIGVVLVQKADVYMFDEPSSYLDVMQRLKAARAIRSLLQ-INTYVITVEHDLSVLDYLSDFIC 296
                34556799*************************************************999999999975.8889999*****99999999765 PP

  == domain 3    score: 21.5 bits;  conditional E-value: 5.2e-07
  TIGR02142   5 lekrlgdfeLdvdl.elpgkgvtalFGrsGsGktslirliaGLtrpd 50 
                ++k++g+f+L+++  +  g+++  + G+ G+Gkt++ir++aG+++ d
  MMETSP1137-20121227|210_1 364 MKKTQGEFKLKIEPgSFTGSEILVMLGQNGTGKTTFIRMLAGMMNSD 410
                789*********963679************************99876 PP

  == domain 4    score: 40.4 bits;  conditional E-value: 9e-13
  TIGR02142 114 kvielLgiehLleRlpgkLsGGekqRvaigRAlLssPeLLlmDePLaaLDekrkkeilPyLerlsaelkiPilyvsHsldevarladrvvvle 206
                 v++ + +e+L++ +++ LsGGe qRva+  Al +  ++ l+DeP a LD++++      ++r   + k     v H++   + ladrv+v e
  MMETSP1137-20121227|210_1 457 DVMKPMLMEPLMDQEVKYLSGGELQRVALVIALGTPADIYLIDEPSAYLDSEQRITAAKVIKRFIMHAKKTGFIVEHDFIMATYLADRVIVYE 549
                56666779**********************************************************************************976 PP

>> TIGR02857  CydD: thiol reductant ABC exporter, CydD subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.8   0.0   3.6e-17   1.7e-15     346     521 ..     110     289 ..      91     296 .. 0.81
   2 !   16.9   0.0   1.1e-05   0.00051     321     376 ..     351     411 ..     332     429 .. 0.80
   3 !   39.7   0.0   1.3e-12   6.3e-11     448     527 ..     464     546 ..     438     548 .. 0.82

  Alignments for each domain:
  == domain 1    score: 54.8 bits;  conditional E-value: 3.6e-17
  TIGR02857 346 epgelvalvGaSGaGKstllklllgfvepteGailv....ngaelaeldadswrkqiawvpQ..kPllfegtvaenirlarkdaseaevkealeragldelvkalpqgleteiGergagLSgGqrqRlaLArallrdapllllDEPtahLDaeteaevlealrelaegrt.vllvaHrlalae 521
                ++g++++lvG+ G GKst lk+l+g  +p+ G+ +     + + la+++ +++++  + +      ++++    + i  a k+   + +k+  er +++e v++l+  l+   +++  +LSgG+ qR a+  +l+++a++ ++DEP + LD  +  +  +a+r+l++ +t v+ v H+l+++ 
  MMETSP1137-20121227|210_1 110 RAGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFENppdwQ-EILAHFRGSELQNYFTKILEddMKAIIKPQYVDHIPKAVKGKVGEILKKKDERDAITEAVDTLD--LHPVFDREVDKLSGGELQRFAIGVVLVQKADVYMFDEPSSYLDVMQRLKAARAIRSLLQINTyVITVEHDLSVLD 289
                689*******************************9766532.3466777666666665554311345666666677777777777777777777777888888887..788999999*************************************************86662667899998765 PP

  == domain 2    score: 16.9 bits;  conditional E-value: 1.1e-05
  TIGR02857 321 slelenvsvayegrkpalkevsltvepg.....elvalvGaSGaGKstllklllgfvepte 376
                + e +  +++y++ k+   e++l++epg     e+++++G+ G GK+t +++l+g+++ ++
  MMETSP1137-20121227|210_1 351 ETEGTHATFQYPEMKKTQGEFKLKIEPGsftgsEILVMLGQNGTGKTTFIRMLAGMMNSDG 411
                5567788999*999999**********933333356899******************8765 PP

  == domain 3    score: 39.7 bits;  conditional E-value: 1.3e-12
  TIGR02857 448 leteiGergagLSgGqrqRlaLArallrdapllllDEPtahLDaeteaevlealrela..egrtvllvaHrlala.eladkiv 527
                +e  ++++ + LSgG+ qR+aL  al  +a++ l+DEP a LD+e+  +  + +++++   ++t ++v H+  +a  lad+++
  MMETSP1137-20121227|210_1 464 MEPLMDQEVKYLSGGELQRVALVIALGTPADIYLIDEPSAYLDSEQRITAAKVIKRFImhAKKTGFIVEHDFIMAtYLADRVI 546
                55667889999*********************************9988888888887655899*******9765515677776 PP

>> TIGR03608  L_ocin_972_ABC: putative bacteriocin export ABC transporter, lactococcin 972 group
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.9   0.1   2.1e-18   9.9e-17      22     199 ..     110     290 ..      91     296 .. 0.86
   2 !    9.1   0.2    0.0035      0.17      17      51 ..     371     410 ..     360     428 .. 0.75
   3 !   41.0   0.0   6.3e-13     3e-11     106     204 ..     446     546 ..     427     548 .. 0.84

  Alignments for each domain:
  == domain 1    score: 58.9 bits;  conditional E-value: 2.1e-18
  TIGR03608  22 ekGelvaivGesGsGKstlLnilgllekkdsgkvilegkekaklkskkaskllreklgylFqnf.aLlenetveenlelalk...lkkkskkekekkkkevlekvglekklkkkiyelsgGekqRvalarillkeselilADEPtgsLDkknreevlellkelkeegktiiivtHdpevaek 199
                 +G+++ +vG+ G GKst L il+  +k++ g++    + ++ l + + s+l+      l  +  a++  + v++ +  a+k    + ++kk+++++++e++++++l+   ++++ +lsgGe qR a+  +l++++++ + DEP + LD  +r +  + +++l + ++ +i v Hd +v + 
  MMETSP1137-20121227|210_1 110 RAGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFENPPDWQEILAHFRGSELQNYFTKILEDDMkAIIKPQYVDH-IPKAVKgkvGEILKKKDERDAITEAVDTLDLHPVFDREVDKLSGGELQRFAIGVVLVQKADVYMFDEPSSYLDVMQRLKAARAIRSLLQINTYVITVEHDLSVLDY 290
                479*******************************99998888889999999998888888888735666666665.55455411145678899999********************************************************************************999775 PP

  == domain 2    score: 9.1 bits;  conditional E-value: 0.0035
  TIGR03608  17 lslkiekG.....elvaivGesGsGKstlLnilgllekkd 51 
                ++lkie G     e++ ++G+ G+GK+t++ +l+ + + d
  MMETSP1137-20121227|210_1 371 FKLKIEPGsftgsEILVMLGQNGTGKTTFIRMLAGMMNSD 410
                5666666522222567899**************9876655 PP

  == domain 3    score: 41.0 bits;  conditional E-value: 6.3e-13
  TIGR03608 106 kskkekekkkkevlekvglekklkkkiyelsgGekqRvalarillkeselilADEPtgsLDkknreevlellke.lkeegktiiivtHdpevae.kadrvi 204
                +  + + + + +v++ + +e  +++++  lsgGe qRval+ +l +++++ l DEP + LD+++r +  +++k  + ++ kt  iv Hd  +a   adrvi
  MMETSP1137-20121227|210_1 446 RDASINPQFMSDVMKPMLMEPLMDQEVKYLSGGELQRVALVIALGTPADIYLIDEPSAYLDSEQRITAAKVIKRfIMHAKKTGFIVEHDFIMATyLADRVI 546
                3444566778899999999**********************************************9999999883467788999*****988762578877 PP

>> TIGR01166  cbiO: cobalt ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.1   0.2     5e-20   2.4e-18      17     188 ..     111     286 ..     100     288 .. 0.86
   2 !   16.1   0.0   2.6e-05    0.0013      17      43 ..     382     408 ..     366     421 .. 0.89
   3 !   27.7   0.0   7.1e-09   3.4e-07     111     186 ..     458     534 ..     445     538 .. 0.83

  Alignments for each domain:
  == domain 1    score: 64.1 bits;  conditional E-value: 5e-20
  TIGR01166  17 rgevlallGanGaGkstlllhlnGllrPksGkvll..dGeeldysrkgllelrkkvalvlqdpddqlfaadvdedvafgpl.nlG..lseaeverrvrealaavdisgleerpthllsgGekkrvaiagavalrpdvllldePtagldpaGaeqlleilrklreeGktvvisthdvd 188
                 g+vl+l+G+nG Gkst l+ l+G  +P+ G+     d +e+    +g  el++  + +l d  + +++++  + +  + +  +G  l++++ +  + ea++++d++ + +r +++lsgGe +r ai  +++ ++dv ++deP++ ld   + + ++++r l +  + v+   hd+ 
  MMETSP1137-20121227|210_1 111 AGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFENppDWQEILAHFRG-SELQNYFTKILEDDMKAIIKPQYVDHIPKAVKgKVGeiLKKKDERDAITEAVDTLDLHPVFDREVDKLSGGELQRFAIGVVLVQKADVYMFDEPSSYLDVMQRLKAARAIRSLLQINTYVITVEHDLS 286
                699*****************************9863344554333333.3555667788999999****999998876554245544788888999*******************************************************************************86 PP

  == domain 2    score: 16.1 bits;  conditional E-value: 2.6e-05
  TIGR01166  17 rgevlallGanGaGkstlllhlnGllr 43 
                 +e l++lG+nG+Gk+t++++l+G+++
  MMETSP1137-20121227|210_1 382 GSEILVMLGQNGTGKTTFIRMLAGMMN 408
                57899*******************986 PP

  == domain 3    score: 27.7 bits;  conditional E-value: 7.1e-09
  TIGR01166 111 alaavdisgleerpthllsgGekkrvaiagavalrpdvllldePtagldpaGaeqlleilrklr.eeGktvvisthd 186
                 ++ + ++ l ++ ++ lsgGe +rva+  a+   +d+ l+deP+a ld++ +   +++++++  ++ kt  i  hd
  MMETSP1137-20121227|210_1 458 VMKPMLMEPLMDQEVKYLSGGELQRVALVIALGTPADIYLIDEPSAYLDSEQRITAAKVIKRFImHAKKTGFIVEHD 534
                566667888999*****************************************999999998541444555666676 PP

>> TIGR01188  drrA: daunorubicin resistance ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.1   1.5e-05   0.00073      17      49 ..     110     142 ..     104     144 .. 0.91
   2 !   40.2   0.0     1e-12     5e-11      96     195 ..     197     296 ..     189     300 .. 0.95
   3 !   49.7   0.8   1.3e-15   6.5e-14      19     196 ..     383     547 ..     366     551 .. 0.88

  Alignments for each domain:
  == domain 1    score: 16.7 bits;  conditional E-value: 1.5e-05
  TIGR01188  17 eegevfglLGPnGAGKtttikmLttllkPdsGt 49 
                ++g+v+gl+G nG GK+t +k+L++  kP+ G+
  MMETSP1137-20121227|210_1 110 RAGQVLGLVGTNGIGKSTALKILAGKQKPNLGR 142
                469**************************9886 PP

  == domain 2    score: 40.2 bits;  conditional E-value: 1e-12
  TIGR01188  96 lpkkeaeeraeellelvelkeaadkkvktysgGmrrrlelaasliaqPevlfLDEPtiGLDprtrraiwdlieelkkegvtilltthyleeadkladrva 195
                l+kk +++ ++e +++++l    d++v ++sgG  +r  +++ l+++ +v+  DEP + LD+  r +  + i++l + ++ ++   h+l   d l+d + 
  MMETSP1137-20121227|210_1 197 LKKKDERDAITEAVDTLDLHPVFDREVDKLSGGELQRFAIGVVLVQKADVYMFDEPSSYLDVMQRLKAARAIRSLLQINTYVITVEHDLSVLDYLSDFIC 296
                5678888999**************************************************************************************9886 PP

  == domain 3    score: 49.7 bits;  conditional E-value: 1.3e-15
  TIGR01188  19 gevfglLGPnGAGKtttikmLttllkPdsGtarvaGyDvvrepdevRrsigvvpqkasvdedLtarenlellgelyglpkkeaeeraeellelvelkeaadkkvktysgGmrrrlelaasliaqPevlfLDEPtiGLDprtrraiwdlieelkke.gvtilltthyleeadkladrvai 196
                 e++ +LG nG GKtt i+mL+++++ d+           +e++  R +++  pq+ s   +  ++  + l+ ++ + +  ++ + ++++++ + +    d++vk++sgG  +r+ l+++l +  +++ +DEP   LD++ r +  ++i+ +  + ++t ++  h++  a  ladrv++
  MMETSP1137-20121227|210_1 383 SEILVMLGQNGTGKTTFIRMLAGMMNSDGD----------EEAQVPRLNVSYKPQTISP--KFDGTVRMLLHKKIRDAS--INPQFMSDVMKPMLMEPLMDQEVKYLSGGELQRVALVIALGTPADIYLIDEPSAYLDSEQRITAAKVIKRFIMHaKKTGFIVEHDFIMATYLADRVIV 547
                57999*******************997754..........4566667777777777666..5678889*******9876..5567899*********************************9999************************99877669********************87 PP

>> TIGR03411  urea_trans_UrtD: urea ABC transporter, ATP-binding protein UrtD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   3.9e-05    0.0019      28      58 ..     112     142 ..     102     154 .. 0.90
   2 !   44.8   0.0     5e-14   2.4e-12     116     215 ..     198     298 ..     185     302 .. 0.91
   3 !   12.1   0.1   0.00051     0.025      28      55 ..     383     410 ..     369     420 .. 0.85
   4 !   29.0   0.0   3.6e-09   1.7e-07     111     214 ..     440     547 ..     425     551 .. 0.84

  Alignments for each domain:
  == domain 1    score: 15.7 bits;  conditional E-value: 3.9e-05
  TIGR03411  28 gelrviiGpnGaGkttllDvitGktrpdeGs 58 
                g++  ++G nG Gk+t l +++Gk +p+ G+
  MMETSP1137-20121227|210_1 112 GQVLGLVGTNGIGKSTALKILAGKQKPNLGR 142
                677789**********************997 PP

  == domain 2    score: 44.8 bits;  conditional E-value: 5e-14
  TIGR03411 116 lskeekerieevleligLeekadkkaglLshGqkqwLeigmllvqepkllllDePvaGmtdeetektaellkelak.ersvvvvehDmefvrelaekvtvl 215
                 +k+e++ i+e+++++ L+   d++  +Ls G+ q+  ig++lvq++++ + DeP + +    + k a+ +++l + ++ v+ vehD++ ++ l++ + +l
  MMETSP1137-20121227|210_1 198 KKKDERDAITEAVDTLDLHPVFDREVDKLSGGELQRFAIGVVLVQKADVYMFDEPSSYLDVMQRLKAARAIRSLLQiNTYVITVEHDLSVLDYLSDFICCL 298
                4678899*****************************************************************98772556889*******99999888877 PP

  == domain 3    score: 12.1 bits;  conditional E-value: 0.00051
  TIGR03411  28 gelrviiGpnGaGkttllDvitGktrpd 55 
                 e+ v++G nG Gktt++ +++G +++d
  MMETSP1137-20121227|210_1 383 SEILVMLGQNGTGKTTFIRMLAGMMNSD 410
                58899******************98765 PP

  == domain 4    score: 29.0 bits;  conditional E-value: 3.6e-09
  TIGR03411 111 llfarlske..ekerieevleligLeekadkkaglLshGqkqwLeigmllvqepkllllDePvaGmtdeetektaellke..lakersvvvvehDmefvrelaekvtv 214
                ll ++++++  + + +++v++ + +e  +d++   Ls G+ q++ + + l   +++ l+DeP a + +e + + a+++k+  ++ +++  +vehD      la++v v
  MMETSP1137-20121227|210_1 440 LLHKKIRDAsiNPQFMSDVMKPMLMEPLMDQEVKYLSGGELQRVALVIALGTPADIYLIDEPSAYLDSEQRITAAKVIKRfiMHAKKTGFIVEHDFIMATYLADRVIV 547
                5555554441134678999999*********************************************************8435678999*******999999999987 PP

>> TIGR03719  ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   0.0   5.5e-07   2.6e-05     345     379 ..     108     143 ..      78     148 .. 0.83
   2 !   36.2   0.0   1.2e-11   5.7e-10     132     229 ..     198     296 ..     150     301 .. 0.79
   3 !   16.1   0.0   1.5e-05   0.00071      29      88 ..     380     440 ..     359     462 .. 0.73
   4 !   28.0   0.0   3.5e-09   1.7e-07     150     217 ..     463     534 ..     449     548 .. 0.80

  Alignments for each domain:
  == domain 1    score: 20.8 bits;  conditional E-value: 5.5e-07
  TIGR03719 345 lpk.ggivGviGpnGaGkstlfklitgkekpdsGel 379
                +p+ g ++G++G+nG Gkst +k+++gk+kp+ G++
  MMETSP1137-20121227|210_1 108 VPRaGQVLGLVGTNGIGKSTALKILAGKQKPNLGRF 143
                56525689***********************99987 PP

  == domain 2    score: 36.2 bits;  conditional E-value: 1.2e-11
  TIGR03719 132 daadawdldskleiamdalrl.peedakveklsGGekrrvalcrlllekPdlllldePtnhldaes...vaWlekflkeykGtvvavthdryfldnvaeWil 229
                +++   d    +  a+d+l l p  d +v+klsGGe +r a+  +l++k d+ ++deP  +ld       a   + l + +  v+ v hd   ld  +++i 
  MMETSP1137-20121227|210_1 198 KKK---DERDAITEAVDTLDLhPVFDREVDKLSGGELQRFAIGVVLVQKADVYMFDEPSSYLDVMQrlkAARAIRSLLQINTYVITVEHDLSVLDYLSDFIC 296
                333...344568899****984668**************************************8651113444567889999*************9999986 PP

  == domain 3    score: 16.1 bits;  conditional E-value: 1.5e-05
  TIGR03719  29 fpgaki.GvlGlnGaGkstllkimaGvdkefeGealaaegikvGyleqePkldeektvren 88 
                f+g+ i  +lG+nG+Gk+t+++++aG+ ++   e ++ + ++v y +q  +   + tvr  
  MMETSP1137-20121227|210_1 380 FTGSEIlVMLGQNGTGKTTFIRMLAGMMNSDGDEEAQVPRLNVSYKPQTISPKFDGTVRML 440
                5555551468999999999999999998877777788899999999996444444455555 PP

  == domain 4    score: 28.0 bits;  conditional E-value: 3.5e-09
  TIGR03719 150 lrlpeedakveklsGGekrrvalcrlllekPdlllldePtnhldae....svaWlekflkeykGtvvavthd 217
                l  p +d++v+ lsGGe +rval+  l +  d+ l+deP  +ld+e    + + +++f+ + k t  +v hd
  MMETSP1137-20121227|210_1 463 LMEPLMDQEVKYLSGGELQRVALVIALGTPADIYLIDEPSAYLDSEqritAAKVIKRFIMHAKKTGFIVEHD 534
                666889******************9999999**************933323456777777777888888887 PP

>> TIGR02315  ABC_phnC: phosphonate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.4   0.2   2.8e-14   1.3e-12      26     198 ..     110     278 ..      89     301 .. 0.72
   2 !   16.3   0.0   2.3e-05    0.0011      10      56 ..     360     411 ..     355     428 .. 0.82
   3 !   36.7   0.0   1.3e-11   6.2e-10     134     218 ..     463     547 ..     450     552 .. 0.92

  Alignments for each domain:
  == domain 1    score: 45.4 bits;  conditional E-value: 2.8e-14
  TIGR02315  26 kkGelvaviGlsGaGkstllrsinrlveissgsill..egkev.tklkkkelrklrkkigmifqeynlierltvlenvLsgrlgakstlksllglfseedkekA.lelLervglaelaakradqLsGGqqqRvaiaRalaqqpklilaDEPiasLDpksskqvmdllkrinkekgit 198
                + G++++++G+ G Gkst l+ + + ++++ g+ +   + +e+ ++ +++el++  +ki  +  + + i + + ++ + ++    k  + +   +++++d++ A  e+++ ++l+ + ++ +d+LsGG+ qR ai   l+q++++ + DEP + LD  +  +  ++++++ + +   
  MMETSP1137-20121227|210_1 110 RAGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFENppDWQEIlAHFRGSELQNYFTKI--LEDDMKAIIKPQYVDHIPKAV---KGKVGE---ILKKKDERDAiTEAVDTLDLHPVFDREVDKLSGGELQRFAIGVVLVQKADVYMFDEPSSYLDVMQRLKAARAIRSLLQINTYV 278
                679*****************************887633556652567899999988776..566776666665556555443...333333...34555555551689************************************************987666666666655543332 PP

  == domain 2    score: 16.3 bits;  conditional E-value: 2.3e-05
  TIGR02315  10 vypngkqalknvnleikkG.....elvaviGlsGaGkstllrsinrlveiss 56 
                +yp+ k++  + +l+i++G     e+++++G+ G+Gk+t++r++ ++++++ 
  MMETSP1137-20121227|210_1 360 QYPEMKKTQGEFKLKIEPGsftgsEILVMLGQNGTGKTTFIRMLAGMMNSDG 411
                68888888899999999984444456789****************9998654 PP

  == domain 3    score: 36.7 bits;  conditional E-value: 1.3e-11
  TIGR02315 134 glaelaakradqLsGGqqqRvaiaRalaqqpklilaDEPiasLDpksskqvmdllkrinkekgitvivnlHqvdlakkyadrivg 218
                 ++ l ++ +++LsGG+ qRva+  al   +++ l+DEP a LD ++  +  +++kr   + + t  +  H+  +a+  adr++ 
  MMETSP1137-20121227|210_1 463 LMEPLMDQEVKYLSGGELQRVALVIALGTPADIYLIDEPSAYLDSEQRITAAKVIKRFIMHAKKTGFIVEHDFIMATYLADRVIV 547
                566778999*****************************************************9**99999************995 PP

>> TIGR01189  ccmA: heme ABC exporter, ATP-binding protein CcmA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.5   0.7   8.9e-16   4.3e-14      25     185 ..     111     283 ..     100     290 .. 0.76
   2 !   44.4   0.0   6.4e-14   3.1e-12      25     181 ..     382     531 ..     372     540 .. 0.86

  Alignments for each domain:
  == domain 1    score: 50.5 bits;  conditional E-value: 8.9e-16
  TIGR01189  25 aGealvveGpnGiGKttLLRilaGLlkpesGevelndke...laeqrdelaeellylgHldglKaeLsalEnLkfyaallq.............seqktveealekvgLsgledlpvaqLsAGqkrRlalarLllskaplWiLDEPttalDkegvellaellaaHlargGivllath 185
                aG++l ++G nGiGK+t L+ilaG +kp+ G+ e   +    la+ r +  ++      +d +Ka +  +    +  ++ +             +e+ +++ea+++++L+ + d+ v +Ls G  +R+a++ +l++ka +++ DEP   lD+    + a+++++ l+ +  v+   h
  MMETSP1137-20121227|210_1 111 AGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFENPPDWqeiLAHFRGSELQNYFTKILEDDMKAIIKPQ----YVDHIPKavkgkvgeilkkkDERDAITEAVDTLDLHPVFDREVDKLSGGELQRFAIGVVLVQKADVYMFDEPSSYLDVMQRLKAARAIRSLLQINTYVITVEH 283
                9*******************************98763320003333333333322223345555555544....4444433333577778776445559*****************************************************9998888899888888777766555 PP

  == domain 2    score: 44.4 bits;  conditional E-value: 6.4e-14
  TIGR01189  25 aGealvveGpnGiGKttLLRilaGLlkpesGevelndkelaeqrdelaeellylgHldglKaeLsalEnLkfyaallqseqktveealekvgLsgledlpvaqLsAGqkrRlalarLllskaplWiLDEPttalDkeg...vellaellaaHlargGivl 181
                  e+lv+ G+nG+GKtt +R+laG+++++    e+         + ++ ++ y   + + K + +++  L+   ++ + + + +++ ++ + ++ l d  v++Ls G  +R+al   l + a ++++DEP + lD e     +++ +++  H+++ G ++
  MMETSP1137-20121227|210_1 382 GSEILVMLGQNGTGKTTFIRMLAGMMNSDG-DEEA---------QVPRLNVSYKPQTISPKFDGTVRMLLHKKIRDASINPQFMSDVMKPMLMEPLMDQEVKYLSGGELQRVALVIALGTPADIYLIDEPSAYLDSEQritAAKVIKRFIMHAKKTGFIV 531
                5689*********************99864.2222.........245568899999889999999999999888888889999****************************************************9974335677778889999999987 PP

>> TIGR03265  PhnT2: putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.8   0.0    0.0018     0.088      29      60 ..     111     142 ..      88     152 .. 0.90
   2 !   30.7   0.0   8.2e-10     4e-08     104     195 ..     195     285 ..     186     344 .. 0.86
   3 !   13.9   0.0   0.00011    0.0051      28      57 ..     381     410 ..     356     427 .. 0.84
   4 !   38.8   0.0   2.9e-12   1.4e-10     125     210 ..     468     550 ..     451     564 .. 0.90

  Alignments for each domain:
  == domain 1    score: 9.8 bits;  conditional E-value: 0.0018
  TIGR03265  29 kgelvclLGPsGCGkttLLriiaGLekqdaGa 60 
                +g ++ l+G  G Gk+t L+i+aG +k++ G+
  MMETSP1137-20121227|210_1 111 AGQVLGLVGTNGIGKSTALKILAGKQKPNLGR 142
                68999*********************999987 PP

  == domain 2    score: 30.7 bits;  conditional E-value: 8.2e-10
  TIGR03265 104 kklkreevaerveelLelvglsgseekyPgqlsGGqqqrvaLaralalsPglLLLDePlsaLDakvrekLreelkklqrklgvttimvthdq 195
                + lk+++ ++ ++e++++++l+ + ++   +lsGG  qr a++  l+ + ++ ++DeP s LD   r k  + +++l  +++   i v hd 
  MMETSP1137-20121227|210_1 195 EILKKKDERDAITEAVDTLDLHPVFDREVDKLSGGELQRFAIGVVLVQKADVYMFDEPSSYLDVMQRLKAARAIRSLL-QINTYVITVEHDL 285
                55678899999**********************************************************999999984.3555556677775 PP

  == domain 3    score: 13.9 bits;  conditional E-value: 0.00011
  TIGR03265  28 kkgelvclLGPsGCGkttLLriiaGLekqd 57 
                + +e++ +LG  G Gktt++r++aG+ ++d
  MMETSP1137-20121227|210_1 381 TGSEILVMLGQNGTGKTTFIRMLAGMMNSD 410
                45799********************97766 PP

  == domain 4    score: 38.8 bits;  conditional E-value: 2.9e-12
  TIGR03265 125 sgseekyPgqlsGGqqqrvaLaralalsPglLLLDePlsaLDakvrekLreelkklqrklgvttimvthdqeealslaDrivvmnk 210
                 ++e ky   lsGG  qrvaL  al +  ++ L+DeP + LD+  r    + +k++  + + t  +v hd   a  laDr++v + 
  MMETSP1137-20121227|210_1 468 MDQEVKY---LSGGELQRVALVIALGTPADIYLIDEPSAYLDSEQRITAAKVIKRFIMHAKKTGFIVEHDFIMATYLADRVIVYEG 550
                5556666...9************************************************************************875 PP

>> TIGR02673  FtsE: cell division ATP-binding protein FtsE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.4   0.0   4.7e-16   2.3e-14       7     204 ..      92     292 ..      89     299 .. 0.85
   2 !   13.2   0.0   0.00024     0.012       6      54 ..     356     409 ..     353     429 .. 0.82
   3 !   28.0   0.0   6.8e-09   3.3e-07     116     208 ..     453     546 ..     434     550 .. 0.83

  Alignments for each domain:
  == domain 1    score: 51.4 bits;  conditional E-value: 4.7e-16
  TIGR02673   7 vskeyaagveaLkdvslkiekgeflfltGasGaGkttllklllgaekpsrGevevagedvarlrerelpllRrkigvvf.qDfkllkdrtvlenv..alalevrg.kkeeeiqkrveevlelvgledkakalpeelsgGeqqRvaiaRaivnkPelllaDePtGnlDdelserildllkelnkrGttvivathdeelvervk 204
                 +++y+a+   L+++ +  ++g++l l+G+ G Gk+t lk+l g++kp+ G+ e   +  + l + + + l    + +   D k + + + ++ +  a+  +v    k+++ +  ++e++++++l+   +   ++lsgGe qR ai   +v+k ++ + DeP   lD  +  +  + +++l +  t vi + hd ++++  +
  MMETSP1137-20121227|210_1  92 TTHRYSANSFKLHRLPVP-RAGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFENPPDWQEILAHFRGSELQNYFTKILeDDMKAIIKPQYVDHIpkAVKGKVGEiLKKKDERDAITEAVDTLDLHPVFDREVDKLSGGELQRFAIGVVLVQKADVYMFDEPSSYLDVMQRLKAARAIRSLLQINTYVITVEHDLSVLDYLS 292
                577888888888888775.789*******************************987766666666666667666665551689999999999*99444555565424677788899********************************************************************************998765 PP

  == domain 2    score: 13.2 bits;  conditional E-value: 0.00024
  TIGR02673   6 kvskeyaagveaLkdvslkiekgef.....lfltGasGaGkttllklllgaekp 54 
                + +++y++  ++  + +lkie+g+f     l + G+ G+Gktt++++l g+ + 
  MMETSP1137-20121227|210_1 356 HATFQYPEMKKTQGEFKLKIEPGSFtgseiLVMLGQNGTGKTTFIRMLAGMMNS 409
                5678899999999999999999977333336899**************988654 PP

  == domain 3    score: 28.0 bits;  conditional E-value: 6.8e-09
  TIGR02673 116 krveevlelvgledkakalpeelsgGeqqRvaiaRaivnkPelllaDePtGnlDdelserildllkelnkr.Gttvivathdeelvervkkrvl 208
                + +++v++ + +e  +++  + lsgGe qRva+  a+ +  ++ l DeP   lD+e+     +++k++  +   t +++ hd  ++   + rv+
  MMETSP1137-20121227|210_1 453 QFMSDVMKPMLMEPLMDQEVKYLSGGELQRVALVIALGTPADIYLIDEPSAYLDSEQRITAAKVIKRFIMHaKKTGFIVEHDFIMATYLADRVI 546
                556788999999999*****************************************99999999999765415678889999998888888776 PP

>> TIGR00968  3a0106s01: sulfate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0   2.5e-05    0.0012      24      57 ..     110     143 ..      80     158 .. 0.88
   2 !   23.5   0.0   1.5e-07   7.4e-06     104     192 ..     199     286 ..     184     300 .. 0.85
   3 !   11.3   0.0   0.00081     0.039      26      53 ..     383     410 ..     360     417 .. 0.75
   4 !   38.6   0.0   3.5e-12   1.7e-10     111     205 ..     455     549 ..     435     561 .. 0.90

  Alignments for each domain:
  == domain 1    score: 16.2 bits;  conditional E-value: 2.5e-05
  TIGR00968  24 ktGslvallGpsGsGkstllrviaGlekpdsGri 57 
                + G++ +l+G  G Gkst l+++aG +kp+ Gr 
  MMETSP1137-20121227|210_1 110 RAGQVLGLVGTNGIGKSTALKILAGKQKPNLGRF 143
                369***************************9985 PP

  == domain 2    score: 23.5 bits;  conditional E-value: 1.5e-07
  TIGR00968 104 kakikakveellelvqleklgdrypsqlsGGqrqrvalaralavepqvllldepfgaldakvrkelrawlrklhdevkvttvfvthdqe 192
                k+  ++ ++e ++ ++l+ + dr  ++lsGG+ qr a+   l  + +v ++dep + ld   r +  + +r l  +++   + v hd +
  MMETSP1137-20121227|210_1 199 KKDERDAITEAVDTLDLHPVFDREVDKLSGGELQRFAIGVVLVQKADVYMFDEPSSYLDVMQRLKAARAIRSLL-QINTYVITVEHDLS 286
                45567889999999*********************************************999988888888886.46666677778765 PP

  == domain 3    score: 11.3 bits;  conditional E-value: 0.00081
  TIGR00968  26 GslvallGpsGsGkstllrviaGlekpd 53 
                 ++  +lG  G+Gk+t++r++aG+ + d
  MMETSP1137-20121227|210_1 383 SEILVMLGQNGTGKTTFIRMLAGMMNSD 410
                245679*****************98776 PP

  == domain 4    score: 38.6 bits;  conditional E-value: 3.5e-12
  TIGR00968 111 veellelvqleklgdrypsqlsGGqrqrvalaralavepqvllldepfgaldakvrkelrawlrklhdevkvttvfvthdqeealevadrivvle 205
                ++++++ + +e l d+  + lsGG+ qrval  al    ++ l+dep + ld++ r    + ++++  + k t  +v hd   a+ +adr++v e
  MMETSP1137-20121227|210_1 455 MSDVMKPMLMEPLMDQEVKYLSGGELQRVALVIALGTPADIYLIDEPSAYLDSEQRITAAKVIKRFIMHAKKTGFIVEHDFIMATYLADRVIVYE 549
                456777888999999999*************************************************************************9975 PP

>> TIGR03258  PhnT: 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.0   0.0   0.00035     0.017      32      65 ..     110     143 ..      92     166 .. 0.88
   2 !   24.9   0.0   4.2e-08     2e-06     116     200 ..     203     285 ..     184     298 .. 0.87
   3 !   45.3   0.1   2.5e-14   1.2e-12      29     213 ..     373     548 ..     363     560 .. 0.82

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 0.00035
  TIGR03258  32 eaGellallGksGsGkttllravaGfvkadGGrl 65 
                 aG++l l+G  G Gk+t l+++aG  k++ Gr+
  MMETSP1137-20121227|210_1 110 RAGQVLGLVGTNGIGKSTALKILAGKQKPNLGRF 143
                58************************99998875 PP

  == domain 2    score: 24.9 bits;  conditional E-value: 4.2e-08
  TIGR03258 116 aervadalklvqlsdaaarlpaqlsGGqqqrvalaralvvrpdvllldeplsaldaqlrasvveelkalhrelpeltvlyvthdr 200
                 + +++a+ +++l  +  r   +lsGG  qr a+   lv + dv ++dep s ld   r +    +++l +   +  v+ v hd 
  MMETSP1137-20121227|210_1 203 RDAITEAVDTLDLHPVFDREVDKLSGGELQRFAIGVVLVQKADVYMFDEPSSYLDVMQRLKAARAIRSLLQ--INTYVITVEHDL 285
                556899***************************************************99999999998876..366777888885 PP

  == domain 3    score: 45.3 bits;  conditional E-value: 2.5e-14
  TIGR03258  29 leieaG.....ellallGksGsGkttllravaGfvkadG.GrllvadrdlthlppykrnlallvqnyalfphlkveenvafGlrarkqskaliaer.vadalklvqlsdaaarlpaqlsGGqqqrvalaralvvrpdvllldeplsaldaqlrasvveelkalhrelpeltvlyvthdrdealvladkillm 213
                l+ie+G     e+l +lG+ G+Gktt +r++aG++++dG     v   +++            ++  ++ p+   ++     l  +k  +a i+ + ++d +k + +     +  + lsGG  qrval  al    d+ l+dep + ld++ r +  + +k++  +  + t  +v hd   a  lad++ + 
  MMETSP1137-20121227|210_1 373 LKIEPGsftgsEILVMLGQNGTGKTTFIRMLAGMMNSDGdEEAQVPRLNVS------------YKPQTISPK---FDGTVRMLLHKKIRDASINPQfMSDVMKPMLMEPLMDQEVKYLSGGELQRVALVIALGTPADIYLIDEPSAYLDSEQRITAAKVIKRFIMHA-KKTGFIVEHDFIMATYLADRVIVY 548
                666665444459**************************9433444444444............444566675...45555567778999999996527899************************************************************987664.568889**************9764 PP

>> TIGR03375  type_I_sec_LssB: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.9   0.0   0.00011    0.0051     491     523 ..     110     142 ..      94     151 .. 0.91
   2 !   26.8   0.0     7e-09   3.4e-07     602     667 ..     224     290 ..     188     298 .. 0.88
   3 !   18.8   0.0   1.8e-06   8.5e-05     462     519 ..     348     409 ..     336     413 .. 0.82
   4 !   27.1   0.0   5.4e-09   2.6e-07     599     675 ..     470     549 ..     456     551 .. 0.89

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 0.00011
  TIGR03375 491 kpGekvaiiGriGsGKstllklllglyepteGs 523
                ++G+ ++++G++G GKst lk+l+g  +p+ G+
  MMETSP1137-20121227|210_1 110 RAGQVLGLVGTNGIGKSTALKILAGKQKPNLGR 142
                68999************************9997 PP

  == domain 2    score: 26.8 bits;  conditional E-value: 7e-09
  TIGR03375 602 esLSgGQrqavalaRallkdppillLDEPtsalDnsseekllerLkelladkTlvl.vtHrtslLel 667
                ++LSgG  q  a+  +l+++ +++++DEP+s lD  +  k  +++++ll+ +T v+ v H  s+L+ 
  MMETSP1137-20121227|210_1 224 DKLSGGELQRFAIGVVLVQKADVYMFDEPSSYLDVMQRLKAARAIRSLLQINTYVItVEHDLSVLDY 290
                68************************************************777655388*9999985 PP

  == domain 3    score: 18.8 bits;  conditional E-value: 1.8e-06
  TIGR03375 462 lkGeielknvsfkYpeeekaaLknvslkikpG.....ekvaiiGriGsGKstllklllglyep 519
                 k e e  + +f+Ype++k+   + +lki+pG     e + ++G++G+GK+t  ++l+g+++ 
  MMETSP1137-20121227|210_1 348 AKEETEGTHATFQYPEMKKT-QGEFKLKIEPGsftgsEILVMLGQNGTGKTTFIRMLAGMMNS 409
                56667778899****99876.5899******95555455679*****************9975 PP

  == domain 4    score: 27.1 bits;  conditional E-value: 5.4e-09
  TIGR03375 599 erGesLSgGQrqavalaRallkdppillLDEPtsalDnsseekllerLkella..dkTlvlvtHrtslLe.lvdriivld 675
                ++ + LSgG  q val  al +  +i+l+DEP++ lD+++  +  + +k+++   +kT  +v H   + + l+dr+iv +
  MMETSP1137-20121227|210_1 470 QEVKYLSGGELQRVALVIALGTPADIYLIDEPSAYLDSEQRITAAKVIKRFIMhaKKTGFIVEHDFIMATyLADRVIVYE 549
                55678*********************************************987679********99886449*****975 PP

>> TIGR02770  nickel_nikD: nickel import ATP-binding protein NikD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.8   0.0   1.5e-16   7.2e-15      10     198 ..     110     297 ..     106     300 .. 0.81
   2 ?    1.1   0.0      0.93        45      12      38 ..     383     409 ..     379     417 .. 0.83
   3 !   34.5   0.1   5.9e-11   2.8e-09     116     199 ..     465     548 ..     416     551 .. 0.82

  Alignments for each domain:
  == domain 1    score: 52.8 bits;  conditional E-value: 1.5e-16
  TIGR02770  10 krgkvlalvGesGsGksltalailglldkeltktsGeilldgkelaal...alrgreialilqnPrsaf.nPlltikeqlletlkal..ekls.kqakelivealeavgLeeaeevlkkypfelsGGmlqRvmialallleaplliaDePttdlDvvvqaevLklleelrekrglgillithDlgvvaeladevav 198
                + g+vl+lvG  G Gks++ + + g ++++l + +     d +e++a    +  ++ ++ il + ++a+  P +   +++  ++k +  e l+ k+ ++ i+ea++  +L+    v++    +lsGG lqR  i + l+ +a + + DeP++ lDv+++++  + +++l +  ++ ++ + hDl+v+ +l d ++ 
  MMETSP1137-20121227|210_1 110 RAGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFENP--PDWQEILAHfrgSELQNYFTKILEDDMKAIiKPQY--VDHIPKAVKGKvgEILKkKDERDAITEAVDTLDLH---PVFDREVDKLSGGELQRFAIGVVLVQKADVYMFDEPSSYLDVMQRLKAARAIRSLLQI-NTYVITVEHDLSVLDYLSDFICC 297
                679**************99888888888888776654..455666665566677888999***99999724532..34444444432113444467788999999999998...89*****************************************************986.578999***********998876 PP

  == domain 2    score: 1.1 bits;  conditional E-value: 0.93
  TIGR02770  12 gkvlalvGesGsGksltalailglldk 38 
                 ++l ++G+ G+Gk++    + g++++
  MMETSP1137-20121227|210_1 383 SEILVMLGQNGTGKTTFIRMLAGMMNS 409
                58999**********988888887765 PP

  == domain 3    score: 34.5 bits;  conditional E-value: 5.9e-11
  TIGR02770 116 eevlkkypfelsGGmlqRvmialallleaplliaDePttdlDvvvqaevLklleelrekrglgillithDlgvvaeladevavm 199
                e ++++    lsGG lqRv + +al + a + + DeP++ lD  ++++  k ++++  +   + +++ hD+ + ++lad v+v 
  MMETSP1137-20121227|210_1 465 EPLMDQEVKYLSGGELQRVALVIALGTPADIYLIDEPSAYLDSEQRITAAKVIKRFIMHAKKTGFIVEHDFIMATYLADRVIVY 548
                5677777888*******************************************9987777777788***************996 PP

>> TIGR01184  ntrCD: nitrate ABC transporter, ATP-binding proteins C and D
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.0   0.2   1.1e-14   5.1e-13       9     195 ..     110     305 ..     105     316 .. 0.79
   2 ?    6.4   0.0     0.026       1.2      11      36 ..     383     408 ..     370     416 .. 0.79
   3 !   32.3   0.0   3.3e-10   1.6e-08     108     190 ..     468     550 ..     441     558 .. 0.90

  Alignments for each domain:
  == domain 1    score: 47.0 bits;  conditional E-value: 1.1e-14
  TIGR01184   9 kkgefislighsgcgkstllnliaglekptsgavil..egkeitepgpdrmvvfqny..sll..pwltv.....renialavd.avlrdlskserreiveehielvglreaadkrpeqlsggmkqrvaiaralsirpklllldepfgaldaltreelqekllkiveearvtvlmvthdvdealllsdrvvmltngpaak 195
                + g+ + l+g  g gkst l ++ag +kp  g      + +ei      r   +qny   +l    +++      + i  av+ +v + l+k+++r+ + e ++ ++l+   d+++++lsgg  qr ai   l  + ++ ++dep   ld + r +    +  +++  ++ v+ v hd+    +lsd +  l   p a+
  MMETSP1137-20121227|210_1 110 RAGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFENppDWQEIL--AHFRGSELQNYftKILedDMKAIikpqyVDHIPKAVKgKVGEILKKKDERDAITEAVDTLDLHPVFDREVDKLSGGELQRFAIGVVLVQKADVYMFDEPSSYLDVMQRLKAARAIRSLLQ-INTYVITVEHDLSVLDYLSDFICCLYGIPGAY 305
                579999**************************998622455554..445666667763212211122221111157788899845777789999999********************************************************9988776666655.5678999**************99998877764 PP

  == domain 2    score: 6.4 bits;  conditional E-value: 0.026
  TIGR01184  11 gefislighsgcgkstllnliaglek 36 
                 e++ ++g  g gk+t++ ++ag+ +
  MMETSP1137-20121227|210_1 383 SEILVMLGQNGTGKTTFIRMLAGMMN 408
                466889*****************965 PP

  == domain 3    score: 32.3 bits;  conditional E-value: 3.3e-10
  TIGR01184 108 adkrpeqlsggmkqrvaiaralsirpklllldepfgaldaltreelqekllkiveearvtvlmvthdvdealllsdrvvmltn 190
                 d++++ lsgg  qrva+  al +  ++ l+dep   ld+  r    + + + + +a+ t  +v hd   a +l+drv++   
  MMETSP1137-20121227|210_1 468 MDQEVKYLSGGELQRVALVIALGTPADIYLIDEPSAYLDSEQRITAAKVIKRFIMHAKKTGFIVEHDFIMATYLADRVIVYEG 550
                6788999*************************************99999999**************************98655 PP

>> TIGR02211  LolD_lipo_ex: lipoprotein releasing system, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.0   0.00013    0.0063      30      62 ..     111     143 ..      84     169 .. 0.86
   2 !   29.5   0.0   2.1e-09     1e-07     114     206 ..     198     289 ..     184     296 .. 0.86
   3 !    9.3   0.0    0.0032      0.16      30      56 ..     382     408 ..     364     420 .. 0.86
   4 !   30.1   0.0   1.5e-09     7e-08     125     214 ..     458     547 ..     437     551 .. 0.81

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 0.00013
  TIGR02211  30 kgelvaivGssGsGkstllhllggldkptsGev 62 
                +g+++++vG+ G Gkst l +l+g +kp  G+ 
  MMETSP1137-20121227|210_1 111 AGQVLGLVGTNGIGKSTALKILAGKQKPNLGRF 143
                68999***********************99975 PP

  == domain 2    score: 29.5 bits;  conditional E-value: 2.1e-09
  TIGR02211 114 skkeakerakellekvglekrinkkpselsGGerqrvaiaralvnkPklvladePtgnldkktakkifelllelnkekntallvvthdlelak 206
                +kk+ +++ +e ++ ++l+   +++  +lsGGe qr ai   lv+k ++ + deP + ld  +  k  + ++ l  + nt ++ v hdl++ +
  MMETSP1137-20121227|210_1 198 KKKDERDAITEAVDTLDLHPVFDREVDKLSGGELQRFAIGVVLVQKADVYMFDEPSSYLDVMQRLKAARAIRSLL-QINTYVITVEHDLSVLD 289
                4555566667778889999999**************************************999999999998885.57899999999998766 PP

  == domain 3    score: 9.3 bits;  conditional E-value: 0.0032
  TIGR02211  30 kgelvaivGssGsGkstllhllggldk 56 
                 +e++ ++G+ G+Gk+t++ +l+g+ +
  MMETSP1137-20121227|210_1 382 GSEILVMLGQNGTGKTTFIRMLAGMMN 408
                579999******************865 PP

  == domain 4    score: 30.1 bits;  conditional E-value: 1.5e-09
  TIGR02211 125 llekvglekrinkkpselsGGerqrvaiaralvnkPklvladePtgnldkktakkifelllelnkekntallvvthdlelakkldrvlel 214
                +++ + +e  ++++   lsGGe qrva+  al +  ++ l deP + ld+++  +  ++++++  + + +  +v hd  +a  l  ++ +
  MMETSP1137-20121227|210_1 458 VMKPMLMEPLMDQEVKYLSGGELQRVALVIALGTPADIYLIDEPSAYLDSEQRITAAKVIKRFIMHAKKTGFIVEHDFIMATYLADRVIV 547
                55666667778888999************************************999****998776666666789**9999887665555 PP

>> TIGR01187  potA: polyamine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.2   0.0    0.0026      0.13       1      26 [.     117     142 ..     117     164 .. 0.92
   2 !   31.5   0.0   4.3e-10   2.1e-08      75     170 ..     200     294 ..     189     331 .. 0.88
   3 !   11.4   0.0   0.00053     0.026       1      23 [.     388     410 ..     388     422 .. 0.91
   4 !   30.6   0.0     8e-10   3.9e-08      70     174 ..     443     548 ..     436     552 .. 0.90

  Alignments for each domain:
  == domain 1    score: 9.2 bits;  conditional E-value: 0.0026
  TIGR01187   1 lLGpsGsGkttlLrllaGleeldsGk 26 
                l+G+ G Gk+t L++laG ++++ G+
  MMETSP1137-20121227|210_1 117 LVGTNGIGKSTALKILAGKQKPNLGR 142
                689*******************9997 PP

  == domain 2    score: 31.5 bits;  conditional E-value: 4.3e-10
  TIGR01187  75 aeikervkeaLelvqleefakrkpsqlsGGqrqrvalaravvkkPkiLLlDeplsaLDkkLrdqmqlelkalqeklGitvvlvthDqeealtmsdr 170
                ++ ++ ++ea+++ +l+ + +r++ +lsGG  qr a+   +v+k ++ ++Dep s LD   r +    +++l  ++   v+ v hD +    +sd 
  MMETSP1137-20121227|210_1 200 KDERDAITEAVDTLDLHPVFDREVDKLSGGELQRFAIGVVLVQKADVYMFDEPSSYLDVMQRLKAARAIRSLL-QINTYVITVEHDLSVLDYLSDF 294
                444566899*****************************************************99999999987.6888999999997765555555 PP

  == domain 3    score: 11.4 bits;  conditional E-value: 0.00053
  TIGR01187   1 lLGpsGsGkttlLrllaGleeld 23 
                +LG  G+Gktt +r+laG+ + d
  MMETSP1137-20121227|210_1 388 MLGQNGTGKTTFIRMLAGMMNSD 410
                69****************98766 PP

  == domain 4    score: 30.6 bits;  conditional E-value: 8e-10
  TIGR01187  70 rkvpkaeiker.vkeaLelvqleefakrkpsqlsGGqrqrvalaravvkkPkiLLlDeplsaLDkkLrdqmqlelkalqeklGitvvlvthDqeealtmsdriavl 174
                +k+  a i+++ + ++++ + +e + +++++ lsGG  qrval  a+    +i L+Dep + LD + r    + +k++  +   t  +v hD   a  ++dr+ v 
  MMETSP1137-20121227|210_1 443 KKIRDASINPQfMSDVMKPMLMEPLMDQEVKYLSGGELQRVALVIALGTPADIYLIDEPSAYLDSEQRITAAKVIKRFIMHAKKTGFIVEHDFIMATYLADRVIVY 548
                5666667776624588899999999*****************************************************9999********************9875 PP

>> TIGR03771  anch_rpt_ABC: anchored repeat-type ABC transporter, ATP-binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.6   0.0    0.0061      0.29       5      35 ..     111     141 ..     108     149 .. 0.86
   2 !   32.2   0.0   3.7e-10   1.8e-08      86     175 ..     198     287 ..     181     302 .. 0.89
   3 !   40.3   0.1   1.2e-12   5.9e-11       6     188 ..     383     550 ..     379     578 .. 0.81

  Alignments for each domain:
  == domain 1    score: 8.6 bits;  conditional E-value: 0.0061
  TIGR03771   5 kGellgllGpnGaGkttllrailglikvakG 35 
                +G++lgl+G nG Gk+t l+ + g  k++ G
  MMETSP1137-20121227|210_1 111 AGQVLGLVGTNGIGKSTALKILAGKQKPNLG 141
                799****************998887776666 PP

  == domain 2    score: 32.2 bits;  conditional E-value: 3.7e-10
  TIGR03771  86 pkkadfaavadalervklteladrpvGelsGGqrqrvlvaralavkpslllldepftGldlpsqellvelfeelagegtailmtthdlae 175
                 kk++  a+++a+++ +l  + dr v +lsGG+ qr  +   l  k  + ++dep + ld+  + + +  +++l + +t ++ + hdl+ 
  MMETSP1137-20121227|210_1 198 KKKDERDAITEAVDTLDLHPVFDREVDKLSGGELQRFAIGVVLVQKADVYMFDEPSSYLDVMQRLKAARAIRSLLQINTYVITVEHDLSV 287
                3577888********************************************************************************975 PP

  == domain 3    score: 40.3 bits;  conditional E-value: 1.2e-12
  TIGR03771   6 GellgllGpnGaGkttllrailglikvakGsvkvagkssrkgrreiGyvpqrhefawdfpidveqtvlsGragliGllrrpkkadfaavadalervklteladrpvGelsGGqrqrvlvaralavkpslllldepftGldlpsqellvelfee.lagegtailmtthdlaeavatcdrvvllng 188
                 e+l +lG nG+Gktt++r + g+++ + G  +++       r ++ y pq     +d  +    ++l  +      + r    + + ++d ++ + ++ l d+ v  lsGG+ qrv +  al +   + l+dep + ld   + + +++++  +  ++++ +++ hd+  a   +drv++ +g
  MMETSP1137-20121227|210_1 383 SEILVMLGQNGTGKTTFIRMLAGMMN-SDGDEEAQV-----PRLNVSYKPQTISPKFDGTVR---MLLHKK------I-RDASINPQFMSDVMKPMLMEPLMDQEVKYLSGGELQRVALVIALGTPADIYLIDEPSAYLDSEQRITAAKVIKRfIMHAKKTGFIVEHDFIMATYLADRVIVYEG 550
                5899***************9999988.788765555.....6899******87766664332...223322......2.3444455667899*************************************************99999999888724677889999****************9887 PP

>> TIGR01277  thiQ: thiamine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.7   0.0   0.00066     0.032      19      54 ..     106     142 ..      90     149 .. 0.79
   2 !   27.2   0.0   1.1e-08   5.5e-07     105     190 ..     202     286 ..     192     298 .. 0.85
   3 !   39.6   0.2   1.9e-12     9e-11      17     203 ..     371     549 ..     358     555 .. 0.78

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 0.00066
  TIGR01277  19 lsv.eaGervailGesGaGkstllnliaGflepasGe 54 
                l v  aG+ + ++G  G Gkst l+++aG  +p  G 
  MMETSP1137-20121227|210_1 106 LPVpRAGQVLGLVGTNGIGKSTALKILAGKQKPNLGR 142
                55524688889********************998876 PP

  == domain 2    score: 27.2 bits;  conditional E-value: 1.1e-08
  TIGR01277 105 qkekvedvarqvGiadylerlpeelsGGqrqrvalarclvrekpillldepfsaldpklreemlalvkkladekkltlllvthsls 190
                +++ ++++   + +   ++r  ++lsGG+ qr a+   lv++  ++++dep s ld + r +    ++ l +  +  ++ v h+ls
  MMETSP1137-20121227|210_1 202 ERDAITEAVDTLDLHPVFDREVDKLSGGELQRFAIGVVLVQKADVYMFDEPSSYLDVMQRLKAARAIRSLLQI-NTYVITVEHDLS 286
                6677888999999999*****************************************9999888888777654.456777888776 PP

  == domain 3    score: 39.6 bits;  conditional E-value: 1.9e-12
  TIGR01277  17 fdlsveaG.....ervailGesGaGkstllnliaGflepasGeikvndkdhtrsapyerpvsmlfqennlfahltvrqniglGlkpglklnavqkekvedvarqvGiadylerlpeelsGGqrqrvalarclvrekpillldepfsaldpklreemlalvkkladekkltlllvthslsdaaaiasqvvvve 203
                f+l++e G     e++ +lG+ G+Gk+t++ ++aG+++  +G+   ++ ++ r+  + +p +       + +++     + + l+  ++ ++++ + + dv + + ++ ++++  + lsGG+ qrval   l  +  i+l+dep + ld   r     ++k+   + k+t  +v h+   a+  a++v+v e
  MMETSP1137-20121227|210_1 371 FKLKIEPGsftgsEILVMLGQNGTGKTTFIRMLAGMMNS-DGD---EEAQVPRLNVSYKPQT-------ISPKF--DGTVRMLLHKKIRDASINPQFMSDVMKPMLMEPLMDQEVKYLSGGELQRVALVIALGTPADIYLIDEPSAYLDSEQRITAAKVIKRFIMHAKKTGFIVEHDFIMATYLADRVIVYE 549
                556555443333367788999999999999999998754.333...2233333333333322.......22222..223445678888888999999******************************************************************************************99864 PP

>> TIGR02769  nickel_nikE: nickel import ATP-binding protein NikE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.4   0.1   3.7e-15   1.8e-13      36     222 ..     111     296 ..     101     300 .. 0.85
   2 ?    6.3   0.0     0.027       1.3      38      61 ..     384     407 ..     359     429 .. 0.87
   3 !   26.9   0.0   1.4e-08   6.6e-07     139     225 ..     463     549 ..     437     560 .. 0.90

  Alignments for each domain:
  == domain 1    score: 48.4 bits;  conditional E-value: 3.7e-15
  TIGR02769  36 eGetvallGrsGaGkstlarlllGlekPakGevsfrGqdlakldrkqrkafrrdvqlvfqdsisavnprksvreiigePlrhl.tsldeserkariaellelvelrsevldklPrqlsGGqlqriniaralavePklivldeavsnldlvlqasilellkklkqefGlaylfithdlrlvqkfaqrvl 222
                +G+ ++l+G+ G Gkst  ++l G +kP+ G+     +    l +     ++     ++ d + a+   + v++i +    ++ + l++ ++++ i+e +++++l++ v d+   +lsGG lqr +i   l  +  + ++de  s ld++ ++++ + ++ l q   + ++ + hdl++ +++++ + 
  MMETSP1137-20121227|210_1 111 AGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFENPPDWQEILAHFRGSELQNYFTKILEDDMKAIIKPQYVDHIPKAVKGKVgEILKKKDERDAITEAVDTLDLHP-VFDREVDKLSGGELQRFAIGVVLVQKADVYMFDEPSSYLDVMQRLKAARAIRSLLQI-NTYVITVEHDLSVLDYLSDFIC 296
                799****************************9887665555566666777888888888888888877777777665554444155788888999**********87.7999**************************************************875.577899*********9998665 PP

  == domain 2    score: 6.3 bits;  conditional E-value: 0.027
  TIGR02769  38 etvallGrsGaGkstlarlllGle 61 
                e + +lG+ G+Gk+t+ r+l G+ 
  MMETSP1137-20121227|210_1 384 EILVMLGQNGTGKTTFIRMLAGMM 407
                66789****************986 PP

  == domain 3    score: 26.9 bits;  conditional E-value: 1.4e-08
  TIGR02769 139 lrsevldklPrqlsGGqlqriniaralavePklivldeavsnldlvlqasilellkklkqefGlaylfithdlrlvqkfaqrvlvld 225
                l +  +d+  + lsGG lqr+++  al     + ++de  + ld   ++++ + +k++  ++  +  ++ hd+ ++ ++a+rv+v +
  MMETSP1137-20121227|210_1 463 LMEPLMDQEVKYLSGGELQRVALVIALGTPADIYLIDEPSAYLDSEQRITAAKVIKRFIMHAKKTGFIVEHDFIMATYLADRVIVYE 549
                455678999999*********************************************99999999999****************987 PP

>> TIGR02982  heterocyst_DevA: ABC exporter ATP-binding subunit, DevA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.0      0.64        31      30      60 ..     111     141 ..      79     162 .. 0.85
   2 !   29.2   0.0   2.7e-09   1.3e-07     113     207 ..     197     290 ..     185     298 .. 0.88
   3 !   11.3   0.0   0.00082     0.039      30      55 ..     382     407 ..     356     423 .. 0.78
   4 !   36.3   0.0   1.9e-11   9.3e-10     121     215 ..     454     549 ..     435     551 .. 0.86

  Alignments for each domain:
  == domain 1    score: 1.9 bits;  conditional E-value: 0.64
  TIGR02982  30 pgeiviltGpsGsGkttlltligglrsvqeG 60 
                +g+++ l G+ G Gk t l +++g ++   G
  MMETSP1137-20121227|210_1 111 AGQVLGLVGTNGIGKSTALKILAGKQKPNLG 141
                6888889*************99997776655 PP

  == domain 2    score: 29.2 bits;  conditional E-value: 2.7e-09
  TIGR02982 113 lsakeakakaeelleavgleerldykpedlsgGqkqrvaiaralvarPklvladePtaaldkksgrevvellqklareqgttillvthdnrildv 207
                l++k++++  +e + ++ l+  +d+  ++lsgG  qr ai   lv++ ++ + deP + ld     +    ++ l +  +t ++ v hd  +ld 
  MMETSP1137-20121227|210_1 197 LKKKDERDAITEAVDTLDLHPVFDREVDKLSGGELQRFAIGVVLVQKADVYMFDEPSSYLDVMQRLKAARAIRSLLQ-INTYVITVEHDLSVLDY 290
                6778888899999999**********************************************999999999999875.567889999*9999984 PP

  == domain 3    score: 11.3 bits;  conditional E-value: 0.00082
  TIGR02982  30 pgeiviltGpsGsGkttlltligglr 55 
                  ei+++ G+ G+Gktt++ +++g+ 
  MMETSP1137-20121227|210_1 382 GSEILVMLGQNGTGKTTFIRMLAGMM 407
                359****************9998875 PP

  == domain 4    score: 36.3 bits;  conditional E-value: 1.9e-11
  TIGR02982 121 kaeelleavgleerldykpedlsgGqkqrvaiaralvarPklvladePtaaldkksgrevvellqklareqgttillvthdnril.dvadrivkme 215
                  +++++ +++e  +d+  + lsgG  qrva+  al +  ++ l deP a ld++   +  +++++   +   t ++v hd  +   +adr++  e
  MMETSP1137-20121227|210_1 454 FMSDVMKPMLMEPLMDQEVKYLSGGELQRVALVIALGTPADIYLIDEPSAYLDSEQRITAAKVIKRFIMHAKKTGFIVEHDFIMAtYLADRVIVYE 549
                4568899999999********************************************************************8664259***99765 PP

>> TIGR02868  CydC: thiol reductant ABC exporter, CydC subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.8   0.0    0.0012     0.059     360     391 ..     111     142 ..      96     150 .. 0.92
   2 !   27.0   0.1   7.4e-09   3.6e-07     469     529 ..     223     284 ..     202     285 .. 0.87
   3 !   13.5   0.0   9.5e-05    0.0046     334     388 ..     351     410 ..     334     422 .. 0.79
   4 !   27.9   0.0     4e-09   1.9e-07     465     507 ..     468     510 ..     458     535 .. 0.83

  Alignments for each domain:
  == domain 1    score: 9.8 bits;  conditional E-value: 0.0012
  TIGR02868 360 pGervavvGasGaGKstLlallaglldplkGe 391
                +G+ + +vG  G+GKst l++lag  +p+ G+
  MMETSP1137-20121227|210_1 111 AGQVLGLVGTNGIGKSTALKILAGKQKPNLGR 142
                799999******************99999886 PP

  == domain 2    score: 27.0 bits;  conditional E-value: 7.4e-09
  TIGR02868 469 garlSGGerqRlalARaLladapvllLDEPtehLDaeteeelledLlaaeegrt.vvlvthr 529
                   lSGGe qR a+  +L+++a+v + DEP+  LD+ ++ +  +++++ ++ +t v+ v h+
  MMETSP1137-20121227|210_1 223 VDKLSGGELQRFAIGVVLVQKADVYMFDEPSSYLDVMQRLKAARAIRSLLQINTyVITVEHD 284
                578**********************************9999999998888777757777776 PP

  == domain 3    score: 13.5 bits;  conditional E-value: 9.5e-05
  TIGR02868 334 tlelrdlsvsypgaeevlkgvsldlepG.....ervavvGasGaGKstLlallaglldpl 388
                + e  + +++yp+ ++   + +l++epG     e + ++G+ G+GK+t + +lag+++++
  MMETSP1137-20121227|210_1 351 ETEGTHATFQYPEMKKTQGEFKLKIEPGsftgsEILVMLGQNGTGKTTFIRMLAGMMNSD 410
                4566788999****999*********9833332245679*****************9854 PP

  == domain 4    score: 27.9 bits;  conditional E-value: 4e-09
  TIGR02868 465 lgeggarlSGGerqRlalARaLladapvllLDEPtehLDaete 507
                + ++ + lSGGe qR+al  aL ++a++ l+DEP++ LD e++
  MMETSP1137-20121227|210_1 468 MDQEVKYLSGGELQRVALVIALGTPADIYLIDEPSAYLDSEQR 510
                6778899********************************9854 PP

>> TIGR00960  3a0501s02: type II secretory pathway family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.6   0.0   1.5e-14   7.2e-13      28     204 ..     111     291 ..      90     299 .. 0.81
   2 !    8.3   0.0     0.008      0.39      11      55 ..     361     409 ..     354     425 .. 0.71
   3 !   22.1   0.0   4.6e-07   2.2e-05     137     209 ..     473     546 ..     455     550 .. 0.83

  Alignments for each domain:
  == domain 1    score: 46.6 bits;  conditional E-value: 1.5e-14
  TIGR00960  28 kGelvflvGhsGaGkstllklilgiekpsaGkirvsgqdltklrdrevpflrrqiG.ivfqdfkllsdrtvydnvalalr.iiGv..kgreieervsaalekvGlkdkakalPvqlsgGeqqrvaiaravvnkPallladePtgnlddelsrdilelleevnraGttvlvathdenlvesk 204
                 G++  lvG  G Gkst lk++ g +kp+ G+        + l + + + l++    i+  d k + + + +d +  a++  +G   k ++ ++ +++a++++ l+    +  ++lsgGe qr ai   +v+k  + + deP++ ld  + ++  + ++++ +  t v+   hd ++++  
  MMETSP1137-20121227|210_1 111 AGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFENPPDWQEILAHFRGSELQNYFTkILEDDMKAIIKPQYVDHIPKAVKgKVGEilKKKDERDAITEAVDTLDLHPVFDREVDKLSGGELQRFAIGVVLVQKADVYMFDEPSSYLDVMQRLKAARAIRSLLQINTYVITVEHDLSVLDYL 291
                689999*************************9987654444444555555555555145678899999999998765554224431244566667899****************************************************************************9998765 PP

  == domain 2    score: 8.3 bits;  conditional E-value: 0.008
  TIGR00960  11 ykgaaelaldnvtvkiekGelv.....flvGhsGaGkstllklilgiekp 55 
                y+  ++ +  + ++kie G+++      + G+ G+Gk+t+++++ g+ ++
  MMETSP1137-20121227|210_1 361 YPEMKK-TQGEFKLKIEPGSFTgseilVMLGQNGTGKTTFIRMLAGMMNS 409
                555544.55566677777655322222899**************998754 PP

  == domain 3    score: 22.1 bits;  conditional E-value: 4.6e-07
  TIGR00960 137 vqlsgGeqqrvaiaravvnkPallladePtgnlddelsrdilelleevn.raGttvlvathdenlveskrkrvl 209
                + lsgGe qrva+  a+     + l deP++ ld+e+     ++++++  +a  t  +  hd  +      rv+
  MMETSP1137-20121227|210_1 473 KYLSGGELQRVALVIALGTPADIYLIDEPSAYLDSEQRITAAKVIKRFImHAKKTGFIVEHDFIMATYLADRVI 546
                569**********************************9999999999751455677888888766655555655 PP

>> TIGR03864  PQQ_ABC_ATP: ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.9   0.0    0.0021       0.1      25      53 ..     110     138 ..      90     145 .. 0.79
   2 !   25.8   0.0   2.8e-08   1.4e-06     106     182 ..     199     275 ..     194     292 .. 0.91
   3 !   16.6   0.0   1.9e-05   0.00091      21      54 ..     372     410 ..     355     437 .. 0.75
   4 !   21.1   0.0   7.7e-07   3.7e-05     117     182 ..     459     524 ..     439     550 .. 0.81

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 0.0021
  TIGR03864  25 akgefvaLLGpnGaGkstLfslltrLyea 53 
                + g++  L+G nG Gkst +++l++  + 
  MMETSP1137-20121227|210_1 110 RAGQVLGLVGTNGIGKSTALKILAGKQKP 138
                4689999****************987665 PP

  == domain 2    score: 25.8 bits;  conditional E-value: 2.8e-08
  TIGR03864 106 raeaeerieealarlglaeraeekvreLnGGhrrrveiarallhePklLLlDeatvGLDiesraalveevrelvree 182
                +++ ++ i+ea++ l+l+   + +v +L+GG+ +r  i   l+ + ++ ++De++  LD+  r +  +++r+l + +
  MMETSP1137-20121227|210_1 199 KKDERDAITEAVDTLDLHPVFDREVDKLSGGELQRFAIGVVLVQKADVYMFDEPSSYLDVMQRLKAARAIRSLLQIN 275
                5677889*****************************************************************98654 PP

  == domain 3    score: 16.6 bits;  conditional E-value: 1.9e-05
  TIGR03864  21 sltvakgefv.....aLLGpnGaGkstLfslltrLyeak 54 
                +l++++g+f+     ++LG nG Gk+t + +l+++++++
  MMETSP1137-20121227|210_1 372 KLKIEPGSFTgseilVMLGQNGTGKTTFIRMLAGMMNSD 410
                56666665433332299******************9876 PP

  == domain 4    score: 21.1 bits;  conditional E-value: 7.7e-07
  TIGR03864 117 larlglaeraeekvreLnGGhrrrveiarallhePklLLlDeatvGLDiesraalveevrelvree 182
                ++ + ++   +++v+ L+GG+ +rv ++ al    ++ L+De+++ LD e r +  + +++ + ++
  MMETSP1137-20121227|210_1 459 MKPMLMEPLMDQEVKYLSGGELQRVALVIALGTPADIYLIDEPSAYLDSEQRITAAKVIKRFIMHA 524
                5555566677899******************9999*****************99999999877654 PP

>> TIGR00972  3a0107s01c2: phosphate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   0.0     0.046       2.2      26      47 ..     111     132 ..      92     139 .. 0.87
   2 !   29.5   0.0     2e-09   9.5e-08     117     214 ..     193     296 ..     171     303 .. 0.77
   3 !   10.7   0.1    0.0011     0.053      25      53 ..     381     409 ..     355     445 .. 0.82
   4 !   28.9   0.0   2.9e-09   1.4e-07     139     216 ..     469     548 ..     421     555 .. 0.85

  Alignments for each domain:
  == domain 1    score: 5.4 bits;  conditional E-value: 0.046
  TIGR00972  26 knkvtaliGpsGcGkstllrsl 47 
                + +v +l+G  G Gkst l+ l
  MMETSP1137-20121227|210_1 111 AGQVLGLVGTNGIGKSTALKIL 132
                46999**************987 PP

  == domain 2    score: 29.5 bits;  conditional E-value: 2e-09
  TIGR00972 117 ldeiveesLkkaalwdevkd.....klkksalsLsGGqqqrlciaralavePevlLlDePtsaLDpiatekieeliqeLkkkyt.ivivthnmqqaarvsdkta 214
                + ei +++ ++ a+ ++v +       +++  +LsGG  qr++i   l  + +v ++DeP+s LD ++  k    i++L +  t ++ v h+++    +sd + 
  MMETSP1137-20121227|210_1 193 VGEILKKKDERDAITEAVDTldlhpVFDREVDKLSGGELQRFAIGVVLVQKADVYMFDEPSSYLDVMQRLKAARAIRSLLQINTyVITVEHDLSVLDYLSDFIC 296
                455555555555555544321111134566779********************************************998876625669999998888887665 PP

  == domain 3    score: 10.7 bits;  conditional E-value: 0.0011
  TIGR00972  25 kknkvtaliGpsGcGkstllrslnrlndl 53 
                +  ++ +++G  G+Gk+t++r l  + + 
  MMETSP1137-20121227|210_1 381 TGSEILVMLGQNGTGKTTFIRMLAGMMNS 409
                5678999****************988654 PP

  == domain 4    score: 28.9 bits;  conditional E-value: 2.9e-09
  TIGR00972 139 kksalsLsGGqqqrlciaralavePevlLlDePtsaLDpiatekieeliqe..Lkkkytivivthnmqqaarvsdktaff 216
                +++   LsGG  qr+++  al +  ++ L+DeP++ LD+++  +  ++i+   ++ k t  iv h++  a+ ++d+++++
  MMETSP1137-20121227|210_1 469 DQEVKYLSGGELQRVALVIALGTPADIYLIDEPSAYLDSEQRITAAKVIKRfiMHAKKTGFIVEHDFIMATYLADRVIVY 548
                566778*********************************9887777777763246678999***************9864 PP

>> TIGR03410  urea_trans_UrtE: urea ABC transporter, ATP-binding protein UrtE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0     5e-05    0.0024      24      57 ..     110     143 ..      91     154 .. 0.87
   2 !   19.9   0.0   1.8e-06   8.7e-05     121     201 ..     215     294 ..     189     300 .. 0.75
   3 !   15.5   0.0   3.9e-05    0.0019      26      52 ..     383     409 ..     371     430 .. 0.86
   4 !   17.7   0.0   8.7e-06   0.00042     119     206 ..     461     549 ..     435     560 .. 0.87

  Alignments for each domain:
  == domain 1    score: 15.2 bits;  conditional E-value: 5e-05
  TIGR03410  24 ekgevvavlGrngvGkttllkalvgllkvksGei 57 
                ++g+v+ ++G+ng+Gk+t lk l g +k + G+ 
  MMETSP1137-20121227|210_1 110 RAGQVLGLVGTNGIGKSTALKILAGKQKPNLGRF 143
                47899**********************9999876 PP

  == domain 2    score: 19.9 bits;  conditional E-value: 1.8e-06
  TIGR03410 121 lkemlkRrgGdLsGGqqqqlaiaRaLvtePklllLDePteGiqPsiikeiekvikelakekdlaillveqvldfaleladr 201
                l+ + +R+  +LsGG  q +ai+ +Lv++  + + DeP+  +      + +++i++l +  +  ++ ve+ l+    l+d 
  MMETSP1137-20121227|210_1 215 LHPVFDREVDKLSGGELQRFAIGVVLVQKADVYMFDEPSSYLDVMQRLKAARAIRSLLQ-INTYVITVEHDLSVLDYLSDF 294
                5566789999****************************998865555556678888876.466788888888776666665 PP

  == domain 3    score: 15.5 bits;  conditional E-value: 3.9e-05
  TIGR03410  26 gevvavlGrngvGkttllkalvgllkv 52 
                +e++++lG+ng+Gktt+++ l g+++ 
  MMETSP1137-20121227|210_1 383 SEILVMLGQNGTGKTTFIRMLAGMMNS 409
                68999******************9875 PP

  == domain 4    score: 17.7 bits;  conditional E-value: 8.7e-06
  TIGR03410 119 Pvlke.mlkRrgGdLsGGqqqqlaiaRaLvtePklllLDePteGiqPsiikeiekvikelakekdlaillveqvldfaleladrylvle 206
                P+l e +++ +   LsGG  q +a+  aL t   + l+DeP+  +        +kvik+   + + +  +ve+ + +a+ ladr++v e
  MMETSP1137-20121227|210_1 461 PMLMEpLMDQEVKYLSGGELQRVALVIALGTPADIYLIDEPSAYLDSEQRITAAKVIKRFIMHAKKTGFIVEHDFIMATYLADRVIVYE 549
                55554256777788********************************99999999******99999999****************99865 PP

>> TIGR03269  met_CoM_red_A2: methyl coenzyme M reductase system, component A2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.0   0.0   3.2e-12   1.6e-10     310     496 ..     112     293 ..     105     299 .. 0.84
   2 !   11.0   0.0    0.0005     0.024      25      59 ..     382     416 ..     362     460 .. 0.74
   3 !   18.7   0.0   2.2e-06   0.00011     420     499 ..     467     546 ..     457     551 .. 0.88

  Alignments for each domain:
  == domain 1    score: 38.0 bits;  conditional E-value: 3.2e-12
  TIGR03269 310 keifGlvGtsGaGkttlskilaGvleptsGevevrvGdewvdmtkkgvlerGrakkyiGllhqeyalyphrtvlenlteaiglelpdelakrkavivlkavGfdeekakeildklpdelseGerhrvalaqvlikeprivildeptGtmdpitkvkvaesilkareeleetfvivshdmdfvlevcd 496
                +++ GlvGt G Gk+t  kilaG  +p  G++e     +w ++  +   +    + +  +l  + +   + + ++ + +a+  ++ + l k k      +   d  + + ++d+  d+ls Ge  r a+  vl+++  + ++dep+  +d + + k a++i  +  +++   + v hd+  +  + d
  MMETSP1137-20121227|210_1 112 GQVLGLVGTNGIGKSTALKILAGKQKPNLGRFE--NPPDWQEILAHF-RGSELQNYFTKILEDDMKAIIKPQYVDHIPKAVKGKVGEILKK-KDERDAITEAVDTLDLHPVFDREVDKLSGGELQRFAIGVVLVQKADVYMFDEPSSYLDVMQRLKAARAIR-SLLQINTYVITVEHDLSVLDYLSD 293
                6899**************************976..568999987654.3333444556799********************9999766655.55555555667888999***********************************************999985.667888777889***977665555 PP

  == domain 2    score: 11.0 bits;  conditional E-value: 0.0005
  TIGR03269  25 eGevlGilGksGaGksvllhllrGldeyeptsGki 59 
                  e+l +lG+ G+Gk+ ++++l G+ + + ++   
  MMETSP1137-20121227|210_1 382 GSEILVMLGQNGTGKTTFIRMLAGMMNSDGDEEAQ 416
                45778888888888888888888887766665544 PP

  == domain 3    score: 18.7 bits;  conditional E-value: 2.2e-06
  TIGR03269 420 ildklpdelseGerhrvalaqvlikeprivildeptGtmdpitkvkvaesilkareeleetfvivshdmdfvlevcdraa 499
                ++d+  + ls Ge  rval   l     i ++dep+  +d   + + a+ i +     ++t  iv hd  + + + dr+ 
  MMETSP1137-20121227|210_1 467 LMDQEVKYLSGGELQRVALVIALGTPADIYLIDEPSAYLDSEQRITAAKVIKRFIMHAKKTGFIVEHDFIMATYLADRVI 546
                56777888999********99999999999*********999999999999999999999999999*9999999999975 PP

>> TIGR03740  galliderm_ABC: lantibiotic protection ABC transporter, ATP-binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.0   0.4   4.4e-14   2.1e-12      26     197 ..     112     298 ..      98     305 .. 0.82
   2 !   21.7   0.8     6e-07   2.9e-05      26     171 ..     383     521 ..     372     553 .. 0.77

  Alignments for each domain:
  == domain 1    score: 45.0 bits;  conditional E-value: 4.4e-14
  TIGR03740  26 nsvygllGpnGaGkstllklltGllrktsG.........eil..ldgre...wtrkdlkkiGsliesPalyenltarenlkvrtlllglpe.srieevlkivdlentekkkakqfslGmkqrlGiaiallnkPkllildePtnGldPlGiqelreliksfpekGitvilsshilsevelladhiGii 197
                 +v gl+G nG Gkst lk+l+G  +++ G         eil  + g+e   +  k l++    i +P   +++      kv  +l++ +e + i e ++++dl+    ++++++s G  qr+ i + l++k ++ ++deP+  ld +   +  + i+s+ +  + vi   h ls ++ l+d+i  +
  MMETSP1137-20121227|210_1 112 GQVLGLVGTNGIGKSTALKILAGKQKPNLGrfenppdwqEILahFRGSElqnYFTKILEDDMKAIIKPQYVDHIPKAVKGKVGEILKKKDErDAITEAVDTLDLHPVFDREVDKLSGGELQRFAIGVVLVQKADVYMFDEPSSYLDVMQRLKAARAIRSLLQINTYVITVEHDLSVLDYLSDFICCL 298
                5899*********************999992222222223432255544111345667665566668999999999989999887776654278*****************************************************988888889***************************9765 PP

  == domain 2    score: 21.7 bits;  conditional E-value: 6e-07
  TIGR03740  26 nsvygllGpnGaGkstllklltGllrktsGeilldgrewtrkdlkkiGsliesPalyenltarenlkvrtlllglpesrieevlkivdlentekkkakqfslGmkqrlGiaiallnkPkllildePtnGldPlGiqelreliksfp 171
                +++  +lG nG+Gk+t +++l+G+++ +      ++ ++ r +++     i sP   +  t r  l+ +    +++ + +++v+k + +e    +++k +s G  qr+ + ial    ++ ++deP+  ld        ++ik f 
  MMETSP1137-20121227|210_1 383 SEILVMLGQNGTGKTTFIRMLAGMMNSDGD----EEAQVPRLNVSYKPQTI-SPKFDG--TVRMLLHKKIRDASINPQFMSDVMKPMLMEPLMDQEVKYLSGGELQRVALVIALGTPADIYLIDEPSAYLDSEQRITAAKVIKRFI 521
                578899******************998754....45677777776666666.565544..5566666667778999999*************************************9*************9876666666666664 PP

>> TIGR01186  proV: glycine betaine/L-proline transport ATP binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.1   0.8   3.8e-08   1.8e-06      18     198 ..     111     293 ..     101     300 .. 0.75
   2 !   11.6   0.1   0.00048     0.023      18      43 ..     382     407 ..     364     413 .. 0.80
   3 !   32.4   0.0   2.3e-10   1.1e-08     112     203 ..     457     548 ..     441     566 .. 0.93

  Alignments for each domain:
  == domain 1    score: 25.1 bits;  conditional E-value: 3.8e-08
  TIGR01186  18 eGeiiviiGlsGsGkstlvrllnrliePtaGkili..dGedi.aeisdaelrevrrkkiamviqkialfPhmtildnislglellk.ideqerkekalealklvdleeyedryPdelsGGmqqrvGlaralaaePdlllmdeafsaldPlirdelqdelvklqkklqktivfithdldealrlgd 198
                 G+++ ++G  G Gkst +++l     P  G+     d ++i a+    el++   k +   ++ i + P        ++  ++ + +++++ ++   ea+  +dl+   dr  d+lsGG  qr  +   l ++ d+ + de+ s ld + r +    +  l + ++  ++ + hdl     l+d
  MMETSP1137-20121227|210_1 111 AGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFENppDWQEIlAHFRGSELQNYFTKILEDDMKAI-IKPQYVDHIPKAVKGKVGEiLKKKDERDAITEAVDTLDLHPVFDREVDKLSGGELQRFAIGVVLVQKADVYMFDEPSSYLDVMQRLKAARAIRSLLQ-INTYVITVEHDLSVLDYLSD 293
                588899999999999999999999999999998643376666256778889776666555444443.3343322222233333333134555667778999999**9999********************************************9999999965.677889999*9976555555 PP

  == domain 2    score: 11.6 bits;  conditional E-value: 0.00048
  TIGR01186  18 eGeiiviiGlsGsGkstlvrllnrli 43 
                  ei+v++G  G+Gk+t +r+l  ++
  MMETSP1137-20121227|210_1 382 GSEILVMLGQNGTGKTTFIRMLAGMM 407
                359******************98665 PP

  == domain 3    score: 32.4 bits;  conditional E-value: 2.3e-10
  TIGR01186 112 ealklvdleeyedryPdelsGGmqqrvGlaralaaePdlllmdeafsaldPlirdelqdelvklqkklqktivfithdldealrlgdrivil 203
                +++k + +e  +d+  + lsGG  qrv l+ al +  d+ l+de+ + ld   r    + ++++  + +kt   + hd+  a  l+dr+++ 
  MMETSP1137-20121227|210_1 457 DVMKPMLMEPLMDQEVKYLSGGELQRVALVIALGTPADIYLIDEPSAYLDSEQRITAAKVIKRFIMHAKKTGFIVEHDFIMATYLADRVIVY 548
                66777888999999999***********************************************************************9875 PP

>> TIGR01288  nodI: nodulation ABC transporter NodI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.4   0.0   0.00052     0.025      29      60 ..     111     142 ..      79     154 .. 0.93
   2 !   20.4   0.0   9.2e-07   4.4e-05     115     208 ..     205     298 ..     188     304 .. 0.90
   3 !   30.7   0.0   6.9e-10   3.3e-08      25     209 ..     380     549 ..     361     565 .. 0.82

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 0.00052
  TIGR01288  29 agecfgllgpngagkstiarlvlglispdegk 60 
                ag+++gl+g ng gkst  +++ g   p+ g+
  MMETSP1137-20121227|210_1 111 AGQVLGLVGTNGIGKSTALKILAGKQKPNLGR 142
                6999************************9997 PP

  == domain 2    score: 20.4 bits;  conditional E-value: 9.2e-07
  TIGR01288 115 vipsllefarleskadvrvadlsggmkrrltlaralindpqllildepttgldpharhliwerlrsllargktilltthlmeeaerlcdrlcvl 208
                +i   ++   l    d +v +lsgg  +r+++   l++  ++ ++dep++ ld   r      +rsll     ++   h +   + l d +c l
  MMETSP1137-20121227|210_1 205 AITEAVDTLDLHPVFDREVDKLSGGELQRFAIGVVLVQKADVYMFDEPSSYLDVMQRLKAARAIRSLLQINTYVITVEHDLSVLDYLSDFICCL 298
                566666666777778999****************************************************99999999*************987 PP

  == domain 3    score: 30.7 bits;  conditional E-value: 6.9e-10
  TIGR01288  25 ftiaagecfgllgpngagkstiarlvlglispdegkitvlgepvpararlarakigvvpqfdnldreftvrenllvfgryfglstreieevipsllefarleskadvrvadlsggmkrrltlaralindpqllildepttgldpharhliwerlrs.llargktilltthlmeeaerlcdrlcvle 209
                f  +  e + +lg ng+gk+t  r++ g+++ d  +    +++vp r  ++     + p+fd      tvr  l    r  +++ + + +v+ ++l    +e   d +v  lsgg  +r++l  al    ++ ++dep++ ld   r    + ++  ++   kt ++  h +  a  l dr+ v e
  MMETSP1137-20121227|210_1 380 F--TGSEILVMLGQNGTGKTTFIRMLAGMMNSDGDE----EAQVP-RLNVSYKPQTISPKFD-----GTVRMLLHKKIRDASINPQFMSDVMKPML----MEPLMDQEVKYLSGGELQRVALVIALGTPADIYLIDEPSAYLDSEQRITAAKVIKRfIMHAKKTGFIVEHDFIMATYLADRVIVYE 549
                3..5679999*******************9988543....34444.4444444445555555.....58998888888999999999999998887....789999*****************************************999888766155667899999999999********9988 PP

>> TIGR03797  NHLM_micro_ABC2: NHLM bacteriocin system ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0   2.6e-05    0.0012     477     509 ..     110     142 ..      90     146 .. 0.86
   2 !   22.5   0.0   1.6e-07   7.8e-06     577     648 ..     214     288 ..     203     299 .. 0.85
   3 !    9.8   0.0    0.0011     0.054     456     502 ..     356     406 ..     347     411 .. 0.85
   4 !   14.0   0.0   5.8e-05    0.0028     570     632 ..     457     518 ..     433     550 .. 0.76

  Alignments for each domain:
  == domain 1    score: 15.2 bits;  conditional E-value: 2.6e-05
  TIGR03797 477 epGefvaivGaSGsGKStllrlLLgFekPesGs 509
                ++G+ +++vG+ G GKSt l++L g +kP+ G 
  MMETSP1137-20121227|210_1 110 RAGQVLGLVGTNGIGKSTALKILAGKQKPNLGR 142
                6899*************************9996 PP

  == domain 2    score: 22.5 bits;  conditional E-value: 1.6e-07
  TIGR03797 577 glhTvisegggtlSGGQrQRlliAralvrkPrillfDEATSALDNrtQ...aiVsesleklkvtRiviAHRLSTi 648
                 lh v +   ++lSGG  QR  i   lv+k  + +fDE  S LD       a  + sl +++   i + H LS +
  MMETSP1137-20121227|210_1 214 DLHPVFDREVDKLSGGELQRFAIGVVLVQKADVYMFDEPSSYLDVMQRlkaARAIRSLLQINTYVITVEHDLSVL 288
                7999****************************************7543222557789999999999999999976 PP

  == domain 3    score: 9.8 bits;  conditional E-value: 0.0011
  TIGR03797 456 rvtFrYekdgplvLddvslkiepGefva.....ivGaSGsGKStllrlLLgF 502
                + tF+Y ++ +++  +  lkiepG f +     + G+ G+GK t++r+L g 
  MMETSP1137-20121227|210_1 356 HATFQY-PEMKKTQGEFKLKIEPGSFTGseilvMLGQNGTGKTTFIRMLAGM 406
                789999.88999999*********99654443389**************885 PP

  == domain 4    score: 14.0 bits;  conditional E-value: 5.8e-05
  TIGR03797 570 DikamPmglhTvisegggtlSGGQrQRlliAralvrkPrillfDEATSALDNrtQaiVsesle 632
                D+ + Pm +  ++++  + lSGG  QR+ +  al +   i l+DE    LD +   +  + ++
  MMETSP1137-20121227|210_1 457 DVMK-PMLMEPLMDQEVKYLSGGELQRVALVIALGTPADIYLIDEPSAYLDSEQRITAAKVIK 518
                5543.*******************************************9**875544444333 PP

>> TIGR02204  MsbA_rel: ABC transporter, permease/ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.6   0.1   2.5e-09   1.2e-07     364     536 ..     110     286 ..      93     296 .. 0.82
   2 !    8.0   0.0    0.0044      0.21     335     387 ..     349     404 ..     338     411 .. 0.81
   3 !   23.6   0.0   8.2e-08     4e-06     474     548 ..     472     549 ..     453     555 .. 0.84

  Alignments for each domain:
  == domain 1    score: 28.6 bits;  conditional E-value: 2.5e-09
  TIGR02204 364 rpGetvalvGPsGaGkstllelllrfydPqsGaill..dGvdl.reldpeelrerlalvpqd..salfaasvleniryGrpdasdeeveaaakaaeadefisklpeGydt.llGergv.tLsGGqkqriaiarailkdapiLLLdeatsaLdaeseqlvqqaleelmkgrttlv.iahrLa 536
                r+G+++ lvG  G Gkst l++l    +P+ G+     d +++ ++++ +el++ +  +  d   a+   + ++ i    p+a + +v +  k+    + i++  +  d  ++ +r v +LsGG  qr ai   ++++a + ++de  s Ld     +  +a+ +l +  t ++ + h L+
  MMETSP1137-20121227|210_1 110 RAGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFENppDWQEIlAHFRGSELQNYFTKILEDdmKAIIKPQYVDHI----PKAVKGKVGEILKKKDERDAITEAVDTLDLhPVFDREVdKLSGGELQRFAIGVVLVQKADVYMFDEPSSYLDVMQRLKAARAIRSLLQINTYVItVEHDLS 286
                78*******************************98544888862578999****9986655512467777777777....8888888888888888888888877777641466776648***********************************************99998763567665 PP

  == domain 2    score: 8.0 bits;  conditional E-value: 0.0044
  TIGR02204 335 rgeiefeevkfayParpdqkaldgldltvrpG.....etvalvGPsGaGkstllelll 387
                + e e  + +f+yP+    k+  +++l+++pG     e + + G  G Gk+t +++l 
  MMETSP1137-20121227|210_1 349 KEETEGTHATFQYPEMK--KTQGEFKLKIEPGsftgsEILVMLGQNGTGKTTFIRMLA 404
                5566667789****998..566799*****996666667999*************996 PP

  == domain 3    score: 23.6 bits;  conditional E-value: 8.2e-08
  TIGR02204 474 gvtLsGGqkqriaiarailkdapiLLLdeatsaLdaeseqlvqqaleel.m.kgrttlviahrL.atvlkadrivvld 548
                   LsGG  qr+a+  a+   a i L+de  + Ld+e   +  + +++  m +++t +++ h +  +   adr++v +
  MMETSP1137-20121227|210_1 472 VKYLSGGELQRVALVIALGTPADIYLIDEPSAYLDSEQRITAAKVIKRFiMhAKKTGFIVEHDFiMATYLADRVIVYE 549
                567********************************9999888888887514256899*****852445679****976 PP

>> TIGR03415  ABC_choXWV_ATP: choline ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.0       1.5        74      49      72 ..     111     134 ..     105     144 .. 0.86
   2 !   25.8   0.1   2.1e-08     1e-06     137     225 ..     198     285 ..     192     291 .. 0.91
   3 ?    6.5   0.0     0.016      0.76      50      73 ..     383     406 ..     369     422 .. 0.87
   4 !   29.7   0.0   1.4e-09   6.6e-08     158     242 ..     468     552 ..     458     573 .. 0.91

  Alignments for each domain:
  == domain 1    score: -0.1 bits;  conditional E-value: 1.5
  TIGR03415  49 eGeilvlmGlsGsGkssllravng 72 
                 G++l l+G  G Gks+ l+ + g
  MMETSP1137-20121227|210_1 111 AGQVLGLVGTNGIGKSTALKILAG 134
                589999***********9998766 PP

  == domain 2    score: 25.8 bits;  conditional E-value: 2.1e-08
  TIGR03415 137 akaerrkrveeqlelvglaeWadkkvgelsGGmqqrvGlarafateadillmdePfsaldPliraklqdellelqkklkktivfvshdl 225
                 k++ r+ ++e ++ ++l+   d+ v+ lsGG  qr  +   +  +ad+ + deP s ld + r k    + +l  +++  ++ v hdl
  MMETSP1137-20121227|210_1 198 KKKDERDAITEAVDTLDLHPVFDREVDKLSGGELQRFAIGVVLVQKADVYMFDEPSSYLDVMQRLKAARAIRSL-LQINTYVITVEHDL 285
                5789999*****************************************************99999887665555.578999999***99 PP

  == domain 3    score: 6.5 bits;  conditional E-value: 0.016
  TIGR03415  50 GeilvlmGlsGsGkssllravngl 73 
                 eilv++G  G+Gk++++r + g+
  MMETSP1137-20121227|210_1 383 SEILVMLGQNGTGKTTFIRMLAGM 406
                59*****************99886 PP

  == domain 4    score: 29.7 bits;  conditional E-value: 1.4e-09
  TIGR03415 158 adkkvgelsGGmqqrvGlarafateadillmdePfsaldPliraklqdellelqkklkktivfvshdldealklGnriaimegGr 242
                 d+ v+ lsGG  qrv l  a+ t adi l+deP + ld   r      + ++  + kkt   v hd+  a  l +r+ + eg  
  MMETSP1137-20121227|210_1 468 MDQEVKYLSGGELQRVALVIALGTPADIYLIDEPSAYLDSEQRITAAKVIKRFIMHAKKTGFIVEHDFIMATYLADRVIVYEGIP 552
                5789999*******************************************************************99999988755 PP

>> TIGR03522  GldA_ABC_ATP: gliding motility-associated ABC transporter ATP-binding subunit GldA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.0   0.4   3.8e-10   1.9e-08      27     187 ..     111     279 ..     100     295 .. 0.79
   2 !   10.1   0.0    0.0017     0.084      28      57 ..     383     412 ..     360     436 .. 0.74
   3 !   18.9   0.0   3.7e-06   0.00018     127     258 ..     468     607 ..     439     651 .. 0.70

  Alignments for each domain:
  == domain 1    score: 32.0 bits;  conditional E-value: 3.8e-10
  TIGR03522  27 kGeivGflGPnGaGkstlmkiltgylkadsGsvav..agedvlk..nslevrkniGylPehn..Plyldlyvreyle.fsaalyk.lkgrklkkrveelielvGlkaeqhkkigalskGyrqrvGlakallhdPkvlildePttGldPnqlveirevikeiakdktvil 187
                 G+++G++G nG Gkst +kil+g  k++ G  +   + +++l      e ++    + e +   + +  yv    +  ++++ + lk++  ++ + e ++   l++   + +++ls G  qr  +   l+ + +v ++deP++ ld  q ++  + i+++ +  t ++
  MMETSP1137-20121227|210_1 111 AGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFENppDWQEILAhfRGSELQNYFTKILEDDmkAIIKPQYVDHIPKaVKGKVGEiLKKKDERDAITEAVDTLDLHPVFDREVDKLSGGELQRFAIGVVLVQKADVYMFDEPSSYLDVMQRLKAARAIRSLLQINTYVI 279
                69*****************************9986323455554114677888877776654224555556655433144455441344467889*******************************************************9999888888877777554 PP

  == domain 2    score: 10.1 bits;  conditional E-value: 0.0017
  TIGR03522  28 GeivGflGPnGaGkstlmkiltgylkadsG 57 
                 ei+ +lG nG+Gk+t +++l+g +++d+ 
  MMETSP1137-20121227|210_1 383 SEILVMLGQNGTGKTTFIRMLAGMMNSDGD 412
                367789*******************99975 PP

  == domain 3    score: 18.9 bits;  conditional E-value: 3.7e-06
  TIGR03522 127 qhkkigalskGyrqrvGlakallhdPkvlildePttGldPnqlveirevike..iakdktvilsthimqevealcdrviiinkGkiv...adkkleelkaaek.kkvievefeeeidlq..llekleevsevkklkgnty 258
                  + +  ls G  qrv l  al    ++ ++deP++ ld +q +   +vik+  +  +kt ++  h       l drvi+ +    v   a +    l+ ++   k +ev f  + +     ++kl++v++v++ +  +y
  MMETSP1137-20121227|210_1 468 MDQEVKYLSGGELQRVALVIALGTPADIYLIDEPSAYLDSEQRITAAKVIKRfiMHAKKTGFIVEHDFIMATYLADRVIVYEGIPSVsctATSPQPLLSGMNMfLKSLEVTFRRDPENYrpRINKLDSVKDVEQKQAGNY 607
                56678899*******************************************84235678999999987778899999998654333300033333445666665666666666655543124666666666666555554 PP

>> TIGR00955  3a01204: pigment precursor permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.7   0.0   1.4e-10   6.6e-09      49     224 ..     110     283 ..     107     290 .. 0.89
   2 !    9.7   0.0    0.0012     0.059      41      79 ..     373     411 ..     333     421 .. 0.72
   3 !   16.7   0.0   9.7e-06   0.00047     162     212 ..     470     520 ..     465     534 .. 0.80

  Alignments for each domain:
  == domain 1    score: 32.7 bits;  conditional E-value: 1.4e-10
  TIGR00955  49 ksGellAvlGsSGaGKtTLlnalafrsekglkvsgd....vllnGekveakemraisayvqqddlf.iptltvrehLmfsahlrlkrrltkkekrerveevleelgLrkcadtrigvpgrvkglSgGerkRlalaselltdPilLfcDEPTsGLDsfsaasvvkvLkklaqkgktviltiH 224
                + G++l ++G+ G GK+T l++la +++ +l +  +      +  +  + +e+++  + + +dd+  i +    +h+    + ++ + l+kk  r ++ e +++l L+   d  +        lSgGe +R a+++ l+++  + ++DEP s LD +   +  +++++l q  + vi++ H
  MMETSP1137-20121227|210_1 110 RAGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFENppdwQEILAHFRG-SELQNYFTKILEDDMKaIIKPQYVDHIPKAVKGKVGEILKKKDERDAITEAVDTLDLHPVFDREVD------KLSGGELQRFAIGVVLVQKADVYMFDEPSSYLDVMQRLKAARAIRSLLQINTYVITVEH 283
                679**************************99775544457556666665.78999999999***96255667779999999*******9*********************999998......5**********************************************999999998877 PP

  == domain 2    score: 9.7 bits;  conditional E-value: 0.0012
  TIGR00955  41 lknvsGvaksGellAvlGsSGaGKtTLlnalafrsekgl 79 
                lk   G +   e+l +lG  G GKtT + +la   +++ 
  MMETSP1137-20121227|210_1 373 LKIEPGSFTGSEILVMLGQNGTGKTTFIRMLAGMMNSDG 411
                56667999999********************98877665 PP

  == domain 3    score: 16.7 bits;  conditional E-value: 9.7e-06
  TIGR00955 162 grvkglSgGerkRlalaselltdPilLfcDEPTsGLDsfsaasvvkvLkkl 212
                ++vk lSgGe +R+al   l t   + ++DEP + LDs    +  kv+k++
  MMETSP1137-20121227|210_1 470 QEVKYLSGGELQRVALVIALGTPADIYLIDEPSAYLDSEQRITAAKVIKRF 520
                5799**************999999**************7655555555543 PP

>> TIGR02324  CP_lyasePhnL: phosphonate C-P lyase system protein PhnL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.0   0.00017    0.0084      21      65 ..      98     143 ..      78     160 .. 0.77
   2 !   16.8   0.0   1.6e-05   0.00077     149     217 ..     225     293 ..     195     297 .. 0.90
   3 ?    7.1   0.0     0.015      0.73      34      57 ..     383     406 ..     360     416 .. 0.81
   4 !   20.5   0.0   1.2e-06   5.9e-05     149     195 ..     474     520 ..     457     546 .. 0.82

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 0.00017
  TIGR02324  21 lpvlkevslev.eaGelvalsGksGaGkstllkslyanYlpesgri 65 
                 +++k  +l v +aG+++ l G+ G Gkst lk l ++ +p+ gr+
  MMETSP1137-20121227|210_1  98 ANSFKLHRLPVpRAGQVLGLVGTNGIGKSTALKILAGKQKPNLGRF 143
                55555555665479*********************99999998875 PP

  == domain 2    score: 16.8 bits;  conditional E-value: 1.6e-05
  TIGR02324 149 tfsGGekqRvniaraliadrPiLLLdePtasLdaanrkvvvelikeakargaaligifhdeevrelvad 217
                  sGGe qR  i   l+++  + + deP + Ld  +r      i+++ +  + +i++ hd +v + ++d
  MMETSP1137-20121227|210_1 225 KLSGGELQRFAIGVVLVQKADVYMFDEPSSYLDVMQRLKAARAIRSLLQINTYVITVEHDLSVLDYLSD 293
                57***********************************99********************9988776665 PP

  == domain 3    score: 7.1 bits;  conditional E-value: 0.015
  TIGR02324  34 GelvalsGksGaGkstllkslyan 57 
                 e++++ G+ G+Gk t++++l + 
  MMETSP1137-20121227|210_1 383 SEILVMLGQNGTGKTTFIRMLAGM 406
                48899**************99665 PP

  == domain 4    score: 20.5 bits;  conditional E-value: 1.2e-06
  TIGR02324 149 tfsGGekqRvniaraliadrPiLLLdePtasLdaanrkvvvelikea 195
                  sGGe qRv +  al ++  i L+deP a Ld+ +r +  ++ik+ 
  MMETSP1137-20121227|210_1 474 YLSGGELQRVALVIALGTPADIYLIDEPSAYLDSEQRITAAKVIKRF 520
                57********************************9997777777653 PP

>> TIGR03005  ectoine_ehuA: ectoine/hydroxyectoine ABC transporter, ATP-binding protein EhuA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.0     0.087       4.2      24      48 ..     110     134 ..      90     161 .. 0.84
   2 !   18.4   0.0   4.2e-06   0.00021     128     219 ..     207     297 ..     180     300 .. 0.75
   3 ?    3.4   0.0      0.16       7.9      27      50 ..     384     407 ..     356     421 .. 0.79
   4 !   31.4   0.0   4.7e-10   2.3e-08     145     221 ..     473     549 ..     457     554 .. 0.94

  Alignments for each domain:
  == domain 1    score: 4.3 bits;  conditional E-value: 0.087
  TIGR03005  24 aaGekvaliGpsGsGkstilrilmt 48 
                 aG+ + l+G  G Gkst l+il  
  MMETSP1137-20121227|210_1 110 RAGQVLGLVGTNGIGKSTALKILAG 134
                5799999***************975 PP

  == domain 2    score: 18.4 bits;  conditional E-value: 4.2e-06
  TIGR03005 128 velldmvGladkadalpaqlsGGqkqrvaiaralalrpkvllfdevtsaldpelveevlnvlrrlasetdltmllvthemgfarefadrvlf 219
                 e +d + l    d    +lsGG+ qr ai   l  +  v +fde++s ld     +    +r l +  +  ++ v h++     ++d ++ 
  MMETSP1137-20121227|210_1 207 TEAVDTLDLHPVFDREVDKLSGGELQRFAIGVVLVQKADVYMFDEPSSYLDVMQRLKAARAIRSLLQI-NTYVITVEHDLSVLDYLSDFICC 297
                4455555555556666789********************************87777777777777654.34456777888877777777765 PP

  == domain 3    score: 3.4 bits;  conditional E-value: 0.16
  TIGR03005  27 ekvaliGpsGsGkstilrilmtle 50 
                e + ++G  G+Gk+t +r+l  + 
  MMETSP1137-20121227|210_1 384 EILVMLGQNGTGKTTFIRMLAGMM 407
                567789*************97664 PP

  == domain 4    score: 31.4 bits;  conditional E-value: 4.7e-10
  TIGR03005 145 aqlsGGqkqrvaiaralalrpkvllfdevtsaldpelveevlnvlrrlasetdltmllvthemgfarefadrvlffd 221
                  lsGG+ qrva+  al     + l de+++ ld e      +v++r+    + t ++v h++ +a  +adrv+ ++
  MMETSP1137-20121227|210_1 473 KYLSGGELQRVALVIALGTPADIYLIDEPSAYLDSEQRITAAKVIKRFIMHAKKTGFIVEHDFIMATYLADRVIVYE 549
                569**********************************************************************9875 PP

>> TIGR02203  MsbA_lipidA: lipid A export permease/ATP-binding protein MsbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.8   0.0   3.8e-09   1.8e-07     357     532 ..     110     288 ..      90     297 .. 0.73
   2 !    8.6   0.0    0.0025      0.12     333     386 ..     353     410 ..     341     413 .. 0.76
   3 !   21.4   0.0   3.4e-07   1.6e-05     466     542 ..     470     549 ..     441     552 .. 0.83

  Alignments for each domain:
  == domain 1    score: 27.8 bits;  conditional E-value: 3.8e-09
  TIGR02203 357 eaGevvalvGrsGsGkstlvnllpRFyepdsGeill..Dgvd.ladlkLasLRrqvalvsqdvvLFddtiaenvaYgel.eevdeaeveealaaaylkdlvdklpeGl..dtevGengskLsGGqRqRlaiaRallkdaPiLiLDeatsaLDneseRlvqaaLerlmkgRttlv.iahRLsti 532
                +aG+v+ lvG  G Gkst +++l+   +p+ G+     D ++ la+++ ++L + ++ +  d +    +i++  +Y ++  ++ + +v e+l++   +d + +  + l  +    ++  kLsGG  qR ai   l++ a + + De  s LD     +   a+  l++  t ++ + h Ls +
  MMETSP1137-20121227|210_1 110 RAGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFENppDWQEiLAHFRGSELQNYFTKILEDDM---KAIIKP-QYVDHiPKAVKGKVGEILKKKDERDAITEAVDTLdlHPVFDREVDKLSGGELQRFAIGVVLVQKADVYMFDEPSSYLDVMQRLKAARAIRSLLQINTYVItVEHDLSVL 288
                79*********************99999999986532244442466666666666665544432...122222.344433566666777777776666666665555400556677888**********************************999999999999999888665378999876 PP

  == domain 2    score: 8.6 bits;  conditional E-value: 0.0025
  TIGR02203 333 efrnvtfrypgddrealdsislkveaG.....evvalvGrsGsGkstlvnllpRFyepd 386
                e  + tf+yp+ + ++  +++lk+e+G     e++ + G+ G Gk+t +++l+  ++ d
  MMETSP1137-20121227|210_1 353 EGTHATFQYPEMK-KTQGEFKLKIEPGsftgsEILVMLGQNGTGKTTFIRMLAGMMNSD 410
                5567789998765.67799*******944333456799*************99877665 PP

  == domain 3    score: 21.4 bits;  conditional E-value: 3.4e-07
  TIGR02203 466 engskLsGGqRqRlaiaRallkdaPiLiLDeatsaLDneseRlvqaaLerl.m.kgRttlviahRL.stiekaDrivvld 542
                ++   LsGG  qR+a+  al   a i ++De  + LD+e   +  + ++r+ m  ++t++++ h        aDr++v +
  MMETSP1137-20121227|210_1 470 QEVKYLSGGELQRVALVIALGTPADIYLIDEPSAYLDSEQRITAAKVIKRFiMhAKKTGFIVEHDFiMATYLADRVIVYE 549
                45567********************************99888888888985242579*******86145668*****976 PP

>> TIGR01193  bacteriocin_ABC: ABC-type bacteriocin transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.0   0.0   8.4e-10   4.1e-08     499     673 ..     111     289 ..      89     300 .. 0.78
   2 ?    4.7   0.0     0.038       1.9     465     526 ..     343     409 ..     335     423 .. 0.77
   3 !   22.7   0.0   1.4e-07   6.7e-06     606     681 ..     469     548 ..     450     554 .. 0.88

  Alignments for each domain:
  == domain 1    score: 30.0 bits;  conditional E-value: 8.4e-10
  TIGR01193 499 knekitlvGlsGsGkstlakllvkffqaesGeillng...kslkdidkhelrqlinylPqePfifsGsilenlllgakenvsqeeikkaveiaeikddiekl..plGyqtelseeassisgGqkqrlalarallsdskvlildestsnldllte...kkivenllklkdktiifvahrlsvak 673
                + +++ lvG  G Gkst  k+l +  +++ G+ +  +     l+++  +el+++ + +  + +    +i++   ++  +++ + ++ ++++  + +d i +   +l ++  +  e  ++sgG  qr a+   l+ +++v+++de +s ld++      + +  ll++ +  +i v h lsv +
  MMETSP1137-20121227|210_1 111 AGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFENPPdwqEILAHFRGSELQNYFTKILEDDM---KAIIKPQYVDHIPKAVKGKVGEILKKKDERDAITEAvdTLDLHPVFDREVDKLSGGELQRFAIGVVLVQKADVYMFDEPSSYLDVMQRlkaARAIRSLLQI-NTYVITVEHDLSVLD 289
                578899*************************99854311133555556667777766666654...578888888888888888888888888888888766223556777899999*********************************9865211678999****.678999*****9976 PP

  == domain 2    score: 4.7 bits;  conditional E-value: 0.038
  TIGR01193 465 telenlngdievndvsysyGygsevledislkikkn.....ekitlvGlsGsGkstlakllvkffqa 526
                +e+  ++ + e  + +++y   ++   + +lki+       e ++++G  G+Gk+t++++l ++ ++
  MMETSP1137-20121227|210_1 343 SENADAKEETEGTHATFQYPEMKKTQGEFKLKIEPGsftgsEILVMLGQNGTGKTTFIRMLAGMMNS 409
                55566667777889999999999999999999986511111566889**************988754 PP

  == domain 3    score: 22.7 bits;  conditional E-value: 1.4e-07
  TIGR01193 606 seeassisgGqkqrlalarallsdskvlildestsnldl...ltekkivenllklkdktiifvahrlsvakk.sdkiivl 681
                 +e   +sgG  qr+al  al ++++++++de ++ ld    +t  k++++++   +kt   v h + +a   +d++iv 
  MMETSP1137-20121227|210_1 469 DQEVKYLSGGELQRVALVIALGTPADIYLIDEPSAYLDSeqrITAAKVIKRFIMHAKKTGFIVEHDFIMATYlADRVIVY 548
                5667789******************************955559**********************999987527888875 PP

>> TIGR01842  type_I_sec_PrtD: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.0   0.5   1.4e-08   6.9e-07     342     524 ..     110     295 ..      98     309 .. 0.83
   2 !    8.8   0.0    0.0023      0.11     333     369 ..     367     408 ..     341     438 .. 0.80
   3 !   20.1   0.0   8.5e-07   4.1e-05     453     525 ..     473     547 ..     461     553 .. 0.79

  Alignments for each domain:
  == domain 1    score: 26.0 bits;  conditional E-value: 1.4e-08
  TIGR01842 342 kaGealaiiGpsgsGkssLarllvGvwlpasGsvr...........lDgadlkqwdretlGksiGYl..PqdveLfeGtvaeniaRfeena.daekvieaaklagvhelilrlpkGYdteigegGaaLsgGqrqRiaLaRalygdPklvvLDePnanLDeeGeqalakalkelkarkitvvvithrpsllelvdkil 524
                +aG++l+++G+ g Gks+  ++l G ++p+ G+ +           + g +l+++ ++ l   +  +  Pq v+ ++ +v+  +  + ++  + +++ ea    + h +       +d e+     +LsgG  qR a+   l  +  + + DeP + LD       a+a+ +l + ++ v+++ h  s+l+     +
  MMETSP1137-20121227|210_1 110 RAGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFEnppdwqeilahFRGSELQNYFTKILEDDMKAIikPQYVDHIPKAVKGKVGEILKKKdERDAITEAVDTLDLHPV-------FDREV----DKLSGGELQRFAIGVVLVQKADVYMFDEPSSYLDVMQRLKAARAIRSLLQINTYVITVEHDLSVLDYLSDFI 295
                58******************************8643333333322378999999999999887765445*******999999999876555055678888888787766.......56666....57**************************************************************99765544 PP

  == domain 2    score: 8.8 bits;  conditional E-value: 0.0023
  TIGR01842 333 tlkgisfalkaG.....ealaiiGpsgsGkssLarllvGvwl 369
                t  + ++++++G     e+l+++G+ g+Gk++  r+l G+++
  MMETSP1137-20121227|210_1 367 TQGEFKLKIEPGsftgsEILVMLGQNGTGKTTFIRMLAGMMN 408
                445566666666333336899******************875 PP

  == domain 3    score: 20.1 bits;  conditional E-value: 8.5e-07
  TIGR01842 453 aaLsgGqrqRiaLaRalygdPklvvLDePnanLDeeGeqalakalke.lkarkitvvvithr.psllelvdkilv 525
                + LsgG  qR+aL  al     + ++DeP a LD+e  +  ak +k+ + ++k t  ++ h  + ++ l+d+++v
  MMETSP1137-20121227|210_1 473 KYLSGGELQRVALVIALGTPADIYLIDEPSAYLDSEQRITAAKVIKRfIMHAKKTGFIVEHDfIMATYLADRVIV 547
                679*************9777779999*************999999984345556666666652556667777776 PP

>> TIGR01192  chvA: glucan exporter ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.8   0.0   2.6e-10   1.2e-08     359     532 ..     110     287 ..      91     297 .. 0.84
   2 ?    3.2   0.0      0.12       5.9     331     385 ..     348     407 ..     331     416 .. 0.68
   3 !   18.6   0.0   2.6e-06   0.00013     470     530 ..     473     535 ..     447     550 .. 0.83

  Alignments for each domain:
  == domain 1    score: 31.8 bits;  conditional E-value: 2.6e-10
  TIGR01192 359 kagqtvaivgptgagkttlinllqrvydpksgqili..dgvdiatvtres.lrksiatvfqdagllnrsirenirlgredatdeevveaakaaaasdfiekrlkgydtl.vger.gnrlsggerqrlaiarailknapilvldeatsaldvetearvkdaidalrknrttfi.iahrlst 532
                +agq + +vg  g gk+t + +l    +p+ g+     d  +i +  r s l++ ++ +++d   ++  i+ +      +a + +v e  k    +d i + +++ d   v +r  ++lsgge qr ai   +++ a + ++de +s ldv    +   ai +l +  t  i + h ls 
  MMETSP1137-20121227|210_1 110 RAGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFENppDWQEILAHFRGSeLQNYFTKILEDD--MKAIIKPQYVDHIPKAVKGKVGEILKKKDERDAITEAVDTLDLHpVFDReVDKLSGGELQRFAIGVVLVQKADVYMFDEPSSYLDVMQRLKAARAIRSLLQINTYVItVEHDLSV 287
                79******************************9974448999988777664888888899886..666666666666678999999999999999999*999999885436565268*********************************************999877766535688886 PP

  == domain 2    score: 3.2 bits;  conditional E-value: 0.12
  TIGR01192 331 vkgavefrdisfefanss..qgvrdvsfeak..ag.qtvaivgptgagkttlinllqrvy 385
                 k + e  + +f++++ +  qg +++ +e    +g + + ++g  g+gktt+i +l  + 
  MMETSP1137-20121227|210_1 348 AKEETEGTHATFQYPEMKktQGEFKLKIEPGsfTGsEILVMLGQNGTGKTTFIRMLAGMM 407
                455666677788888765225655555543211332567889************997665 PP

  == domain 3    score: 18.6 bits;  conditional E-value: 2.6e-06
  TIGR01192 470 nrlsggerqrlaiarailknapilvldeatsaldvetearvkdaid..alrknrttfiiahrl 530
                + lsgge qr+a+  a+   a i ++de ++ ld e  +   + i    ++ ++t fi+ h +
  MMETSP1137-20121227|210_1 473 KYLSGGELQRVALVIALGTPADIYLIDEPSAYLDSEQRITAAKVIKrfIMHAKKTGFIVEHDF 535
                679*********************************9999999997334678999****9975 PP

>> TIGR03796  NHLM_micro_ABC1: NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.1   0.0   0.00036     0.017     503     535 ..     110     142 ..      89     152 .. 0.88
   2 !   15.3   0.0   1.9e-05   0.00091     610     674 ..     220     287 ..     196     298 .. 0.79
   3 !   21.2   0.0   3.1e-07   1.5e-05     483     670 ..     357     533 ..     339     550 .. 0.71

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 0.00036
  TIGR03796 503 kpGqrvAlvGgsGsGkstiaklvaGlyepwsGe 535
                + Gq + lvG+ G Gkst  k++aG  +p  G+
  MMETSP1137-20121227|210_1 110 RAGQVLGLVGTNGIGKSTALKILAGKQKPNLGR 142
                47999********************99998875 PP

  == domain 2    score: 15.3 bits;  conditional E-value: 1.9e-05
  TIGR03796 610 aegganlsGGqrqRleiARaLvknPsiLilDEatsaLDaetEkaidenlr...rRgctciivaHRLst 674
                  +   lsGG+ qR+ i   Lv++  + ++DE  s LD     +  +++r   + +  +i v H Ls 
  MMETSP1137-20121227|210_1 220 DREVDKLSGGELQRFAIGVVLVQKADVYMFDEPSSYLDVMQRLKAARAIRsllQINTYVITVEHDLSV 287
                4556789********************************99988888777222456666778888886 PP

  == domain 3    score: 21.2 bits;  conditional E-value: 3.1e-07
  TIGR03796 483 vtfgysaleapliedfslslkpGq.....rvAlvGgsGsGkstiaklvaGlyepwsGeilfDgkpreeiprevlanslalvdqdiv.lfegtvrdnltlwdetipeedlvrAakDAaihdvilarpggyeaelaegganlsGGqrqRleiARaLvknPsiLilDEatsaLDaetE....kaidenlrrRgctciivaH 670
                 tf y +++ +   +f+l+++pG+      + + G+ G+Gk t  +++aG+ +        Dg + +++pr      +++  q i+  f+gtvr    l       +++ +A  + +   +++ +p  +e  + ++ + lsGG+ qR+ +  aL +   i ++DE  + LD+e      k i++ + +   t  iv H
  MMETSP1137-20121227|210_1 357 ATFQYPEMK-KTQGEFKLKIEPGSftgseILVMLGQNGTGKTTFIRMLAGMMN-------SDGDEEAQVPRLN----VSYKPQTISpKFDGTVRM---LLH-----KKIRDASINPQFMSDVM-KPMLMEPLMDQEVKYLSGGELQRVALVIALGTPADIYLIDEPSAYLDSEQRitaaKVIKRFIMHAKKTGFIVEH 533
                567777664.44578*******963332235789***************9976.......5999999999864....67788998757*****94...333.....33433333333344443.455667777888999********************************985411114444455555556666666 PP

>> TIGR02633  xylG: D-xylose ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   0.0   7.6e-05    0.0037      25      50 ..     110     135 ..     100     177 .. 0.86
   2 !   18.4   0.0   2.7e-06   0.00013     374     472 ..     197     294 ..     188     300 .. 0.90
   3 !    7.6   0.0    0.0049      0.24      23      52 ..     374     408 ..     358     431 .. 0.79
   4 !    7.4   0.0    0.0057      0.28     400     475 ..     471     547 ..     439     551 .. 0.74

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 7.6e-05
  TIGR02633  25 raGeivslcGenGaGkstlmkvlsgv 50 
                raG++++l G nG Gkst +k+l+g 
  MMETSP1137-20121227|210_1 110 RAGQVLGLVGTNGIGKSTALKILAGK 135
                79*********************985 PP

  == domain 2    score: 18.4 bits;  conditional E-value: 2.7e-06
  TIGR02633 374 ideaaelkaieeeikrlkvktaspdlpiarlsGGnqqkavlakllllnprvlildeptrGvdvGakyeiyklinqlaqeGvaiivvsselaevlGlsdr 472
                ++++ e++ai+e+++ l+++ +  d  + +lsGG+ q+  +  +l+ +  v ++dep+  +dv  + +  + i  l q    +i v  +l+ +  lsd 
  MMETSP1137-20121227|210_1 197 LKKKDERDAITEAVDTLDLHPVF-DREVDKLSGGELQRFAIGVVLVQKADVYMFDEPSSYLDVMQRLKAARAIRSLLQINTYVITVEHDLSVLDYLSDF 294
                5678899***********98764.6799**********************************************************9999877777775 PP

  == domain 3    score: 7.6 bits;  conditional E-value: 0.0049
  TIGR02633  23 klraG.....eivslcGenGaGkstlmkvlsgvyp 52 
                k+++G     ei+ + G+nG+Gk+t++++l+g+  
  MMETSP1137-20121227|210_1 374 KIEPGsftgsEILVMLGQNGTGKTTFIRMLAGMMN 408
                55554333349999*****************9864 PP

  == domain 4    score: 7.4 bits;  conditional E-value: 0.0057
  TIGR02633 400 piarlsGGnqqkavlakllllnprvlildeptrGvdvGakyeiyklinqlaqeGv.aiivvsselaevlGlsdrvlv 475
                 +  lsGG+ q+  l   l +   + ++dep+  +d   +    k+i++++ +   +  +v  ++     l+drv+v
  MMETSP1137-20121227|210_1 471 EVKYLSGGELQRVALVIALGTPADIYLIDEPSAYLDSEQRITAAKVIKRFIMHAKkTGFIVEHDFIMATYLADRVIV 547
                57789999999999999999999999999999999987777777777665543320234566667677777777776 PP

>> TIGR01978  sufC: FeS assembly ATPase SufC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.5   0.2   6.1e-11     3e-09      24     211 ..     110     292 ..     104     300 .. 0.88
   2 !   10.8   0.0     0.001      0.05      26      51 ..     383     408 ..     363     430 .. 0.79
   3 ?    5.3   0.0      0.05       2.4     145     211 ..     475     542 ..     442     550 .. 0.77

  Alignments for each domain:
  == domain 1    score: 34.5 bits;  conditional E-value: 6.1e-11
  TIGR01978  24 kkGevhaimGpnGsGkstLskvlaghekyevtsGeiklkgqdlleleveeraraGlflafqapeeipGvsnkeflrsalnavrkargeeeldllefekllkeklelleldeelleRslneGfsGGekkrneilqlallePklaiLDeiDsGlDvDalkivaegvnklreeekalliithyerllelik 211
                ++G+v  ++G+nG Gkst  k+lag++k ++ + e   + q++l+      ++   +++     ++  + + +++ +  +av+ + ge  l+ ++ ++ ++e++++l+l+  + +R++++  sGGe +r  i  +++ + ++ + De  s lDv      a+ + +l + ++ ++ + h   +l++++
  MMETSP1137-20121227|210_1 110 RAGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFENPPDWQEILAHF--RGSELQNYFTKILEDDMKAIIKPQYVDHIPKAVKGKVGE-ILKKKDERDAITEAVDTLDLHPVF-DREVDK-LSGGELQRFAIGVVLVQKADVYMFDEPSSYLDVMQRLKAARAIRSLLQINTYVITVEHDLSVLDYLS 292
                5799*************************998887777777765433..334556688899999******************966665.59******************9865.899986.9********************************99888999**********************9985 PP

  == domain 2    score: 10.8 bits;  conditional E-value: 0.001
  TIGR01978  26 GevhaimGpnGsGkstLskvlaghek 51 
                 e+ +++G+nG+Gk t  ++lag  +
  MMETSP1137-20121227|210_1 383 SEILVMLGQNGTGKTTFIRMLAGMMN 408
                3899*****************99654 PP

  == domain 3    score: 5.3 bits;  conditional E-value: 0.05
  TIGR01978 145 fsGGekkrneilqlallePklaiLDeiDsGlDvDalkivaegvnklree.ekalliithyerllelik 211
                 sGGe +r  ++  +    ++ ++De  + lD +   + a++++++  + +k+  i+ h   +  +++
  MMETSP1137-20121227|210_1 475 LSGGELQRVALVIALGTPADIYLIDEPSAYLDSEQRITAAKVIKRFIMHaKKTGFIVEHDFIMATYLA 542
                7********99887777789********9999998888889999987765677778888877777765 PP

>> TIGR01846  type_I_sec_HlyB: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.8   0.0   1.1e-10   5.2e-09     481     655 ..     110     288 ..      90     298 .. 0.86
   2 ?    1.8   0.0      0.24        12     463     504 ..     359     404 ..     344     412 .. 0.78
   3 !   12.2   0.0   0.00018    0.0086     592     663 ..     473     547 ..     458     551 .. 0.72

  Alignments for each domain:
  == domain 1    score: 32.8 bits;  conditional E-value: 1.1e-10
  TIGR01846 481 kaGeviGivGpsGsGkstltkllqrlyvPekGrvlv..dgvd.laladPawlrrqvgvvlqenvlfsrsirdnialakPaiseekviaaaklaGahdfiselkqGyet.evgek.GaalsGGqrqrialaralvanPrilildeatsaldyeseavimrnlreickgrt.viiiahrlstv 655
                +aG+v+G+vG+ G Gkst  k+l     P+ Gr     d ++ la    + l+   + +l +++  +  i+       P++ + kv ++ k    +d i+e  +  +   v ++   +lsGG  qr a+   lv++  + ++de  s ld        r +r++ +  t vi++ h ls +
  MMETSP1137-20121227|210_1 110 RAGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFENppDWQEiLAHFRGSELQNYFTKILEDDM--KAIIKPQYVDHIPKAVKGKVGEILKKKDERDAITEAVDTLDLhPVFDReVDKLSGGELQRFAIGVVLVQKADVYMFDEPSSYLDVMQRLKAARAIRSLLQINTyVITVEHDLSVL 288
                68*******************************975336555389999**************96..677888888888**********************999998852465551568************************************999*****9999776478899999986 PP

  == domain 2    score: 1.8 bits;  conditional E-value: 0.24
  TIGR01846 463 frykedspevlsnlsldikaGeviG.....ivGpsGsGkstltkllq 504
                f+y ++  +   +++l+i++G + G     + G+ G+Gk+t+ ++l 
  MMETSP1137-20121227|210_1 359 FQY-PEMKKTQGEFKLKIEPGSFTGseilvMLGQNGTGKTTFIRMLA 404
                666.4555667789999*99988775554478**********99986 PP

  == domain 3    score: 12.2 bits;  conditional E-value: 0.00018
  TIGR01846 592 aalsGGqrqrialaralvanPrilildeatsaldyeseavimrnlre..ickgrtviiiahr.lstvraadrilv 663
                  lsGG  qr+al  al +   i ++de  + ld e   +  + +++  + + +t  i+ h  + +   adr++v
  MMETSP1137-20121227|210_1 473 KYLSGGELQRVALVIALGTPADIYLIDEPSAYLDSEQRITAAKVIKRfiMHAKKTGFIVEHDfIMATYLADRVIV 547
                579*******************************98765555555442123445666666652345556666666 PP

>> TIGR02323  CP_lyasePhnK: phosphonate C-P lyase system protein PhnK
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0   2.8e-05    0.0013      24      57 ..     109     142 ..      86     156 .. 0.82
   2 !   10.6   0.0    0.0013     0.062     140     207 ..     224     294 ..     207     300 .. 0.78
   3 ?    7.2   0.0     0.014      0.69      27      54 ..     383     410 ..     363     422 .. 0.83
   4 ?    7.6   0.0      0.01       0.5     140     212 ..     473     549 ..     463     561 .. 0.87

  Alignments for each domain:
  == domain 1    score: 16.0 bits;  conditional E-value: 2.8e-05
  TIGR02323  24 lypGevlgivGesGsGkstllkalaarlladaGe 57 
                 + G+vlg+vG  G Gkst lk la++  ++ G 
  MMETSP1137-20121227|210_1 109 PRAGQVLGLVGTNGIGKSTALKILAGKQKPNLGR 142
                468************************9999886 PP

  == domain 2    score: 10.6 bits;  conditional E-value: 0.0013
  TIGR02323 140 aafsGGmqqrlqiarnlvtrprlvfm.eptGGlvsvqarll...llrglvrelglaviivth.lavarllaqr 207
                 ++sGG  qr+ i  +lv +  + ++ ep+  l  v  rl     +r+l++ ++  vi v h l+v   l++ 
  MMETSP1137-20121227|210_1 224 DKLSGGELQRFAIGVVLVQKADVYMFdEPSSYL-DVMQRLKaarAIRSLLQ-INTYVITVEHdLSVLDYLSDF 294
                578***************999876556888776.55556662234556655.78889999999***9999875 PP

  == domain 3    score: 7.2 bits;  conditional E-value: 0.014
  TIGR02323  27 GevlgivGesGsGkstllkalaarllad 54 
                 e+l ++G+ G+Gk+t++  la+ + +d
  MMETSP1137-20121227|210_1 383 SEILVMLGQNGTGKTTFIRMLAGMMNSD 410
                699*******************966554 PP

  == domain 4    score: 7.6 bits;  conditional E-value: 0.01
  TIGR02323 140 aafsGGmqqrlqiarnlvtrprlvfm.eptGGlvsvqarll..llrglvrelglaviivth.lavarllaqrllvmk 212
                + +sGG  qr+ +  +l t   + ++ ep+  l s q      ++++++ +++ +  iv h + +a  la+r++v +
  MMETSP1137-20121227|210_1 473 KYLSGGELQRVALVIALGTPADIYLIdEPSAYLDSEQRITAakVIKRFIMHAKKTGFIVEHdFIMATYLADRVIVYE 549
                568***************999988889******99885443458899999999999*****999*********9975 PP

>> TIGR00630  uvra: excinuclease ABC subunit A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1   0.0   3.4e-07   1.7e-05     482     900 ..     220     295 ..     155     313 .. 0.64
   2 !   19.5   0.0     1e-06   4.9e-05     822     892 ..     468     536 ..     418     548 .. 0.67

  Alignments for each domain:
  == domain 1    score: 21.1 bits;  conditional E-value: 3.4e-07
  TIGR00630 482 eraaetlsGGeaqrirlatqiGsgLvGvlYvlDePsiGLhqrDnerLietlkrlrdlGntlivvehDeetireaDyvvdiGPgaGehGGevvasgsleellkkkesltgqYlsgkkkievPkerrkaegkvltlkgakennlkdidvsiplglltvitGvsgsGkstLindiLvkaleerlnkaktekgkvkeieGlekldkvieidqspiGrtprsnPatYtgvfdeireLfaetpeakarGykagrfsfnvkgGrCeaCkGdGvikiemnflpdvyvpCevCkGkrynretLevkykgkniadvLdmtveeakeffeavpkisrklellvdvGLgYiklGqpattLsGGeaqrvkLakeLskrstgktlyilDePttGLhfdDikkLlevlqrlvdkGntvvviehnldvik.saDyi 900
                +r+++                                                                                                                                                                                                                                                                                                                                                      LsGGe qr  +   L +++    +y++DeP+  L +    k  + +++l +    v+ +eh+l v+   +D+i
  MMETSP1137-20121227|210_1 220 DREVDK-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LSGGELQRFAIGVVLVQKAD---VYMFDEPSSYLDVMQRLKAARAIRSLLQINTYVITVEHDLSVLDyLSDFI 295
                455555.....................................................................................................................................................................................................................................................................................................................................................55555555555555555443...55555555555555555555555555555555555555555553123444 PP

  == domain 2    score: 19.5 bits;  conditional E-value: 1e-06
  TIGR00630 822 lGqpattLsGGeaqrvkLakeLskrstgktlyilDePttGLhfdDikkLlevlqrlv.dkGntvvviehnld 892
                + q+++ LsGGe qrv L   L        +y++DeP++ L  +      +v++r++ ++ +t  ++eh++ 
  MMETSP1137-20121227|210_1 468 MDQEVKYLSGGELQRVALVIALGTP---ADIYLIDEPSAYLDSEQRITAAKVIKRFImHAKKTGFIVEHDFI 536
                4567777888888888877777544...45788888888887777777777777754155567777777653 PP

>> TIGR00958  3a01208: antigen peptide transporter 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.7   0.1    0.0041       0.2     506     536 ..     111     141 ..     105     144 .. 0.89
   2 !   14.7   0.0     3e-05    0.0015     614     677 ..     222     288 ..     196     297 .. 0.77
   3 ?    4.7   0.0     0.031       1.5     482     530 ..     355     406 ..     345     413 .. 0.79
   4 ?    6.4   0.0      0.01      0.49     612     672 ..     469     533 ..     447     552 .. 0.75

  Alignments for each domain:
  == domain 1    score: 7.7 bits;  conditional E-value: 0.0041
  TIGR00958 506 pGevvalVGPsGsGKStvaallenlYqPtgG 536
                +G+v  lVG +G GKSt   +l    +P+ G
  MMETSP1137-20121227|210_1 111 AGQVLGLVGTNGIGKSTALKILAGKQKPNLG 141
                79*****************999988888877 PP

  == domain 2    score: 14.7 bits;  conditional E-value: 3e-05
  TIGR00958 614 kGsqlsgGqkqriAiARALvrkPrvLiLDeAtSALDa....eveqllqesksaksrtvlliahrLstv 677
                +   lsgG  qr Ai   Lv+k  v + De  S LD+    +  +++  s  + +  v+ + h Ls+ 
  MMETSP1137-20121227|210_1 222 EVDKLSGGELQRFAIGVVLVQKADVYMFDEPSSYLDVmqrlKAARAIR-SLLQINTYVITVEHDLSVL 288
                55689********************************85333333333.3334456688888888875 PP

  == domain 3    score: 4.7 bits;  conditional E-value: 0.031
  TIGR00958 482 qdVsFsYPsrpdkpvlkdLtftlepGevv.....alVGPsGsGKStvaallenl 530
                 + +F YP+  +++   +  +++epG+ +      + G +G GK t + +l  +
  MMETSP1137-20121227|210_1 355 THATFQYPEMKKTQ--GEFKLKIEPGSFTgseilVMLGQNGTGKTTFIRMLAGM 406
                57789999987776..78999*****87633322678************99765 PP

  == domain 4    score: 6.4 bits;  conditional E-value: 0.01
  TIGR00958 612 gekGsqlsgGqkqriAiARALvrkPrvLiLDeAtSALDa....eveqllqesksaksrtvlliah 672
                +++ + lsgG  qr+A+  AL     + ++De  + LD+       +++++   ++++t  ++ h
  MMETSP1137-20121227|210_1 469 DQEVKYLSGGELQRVALVIALGTPADIYLIDEPSAYLDSeqriTAAKVIKRFIMHAKKTGFIVEH 533
                556679****************999*************955443444455555555566555555 PP

>> TIGR02314  ABC_MetN: D-methionine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.2   0.0    0.0048      0.23      26      60 ..     106     141 ..      79     160 .. 0.83
   2 !   12.3   0.0   0.00028     0.013     123     207 ..     208     291 ..     187     300 .. 0.72
   3 ?   -0.1   0.0       1.6        79      32      51 ..     384     403 ..     373     415 .. 0.85
   4 !   12.0   0.0   0.00034     0.016     140     215 ..     474     549 ..     464     595 .. 0.85

  Alignments for each domain:
  == domain 1    score: 8.2 bits;  conditional E-value: 0.0048
  TIGR02314  26 lfvp.kgqifgvigasgagkstlircvnllekptsg 60 
                l vp +gq++g++g+ g gkst ++ +   +kp  g
  MMETSP1137-20121227|210_1 106 LPVPrAGQVLGLVGTNGIGKSTALKILAGKQKPNLG 141
                4577459****************9998877777665 PP

  == domain 2    score: 12.3 bits;  conditional E-value: 0.00028
  TIGR02314 123 ellalvglsdkkdsypsnlsggqkqrvaiaralasepkvllcdeatsaldpattqsilellkeinrrlgltillit..hemdvvkri 207
                e +  + l    d     lsgg+ qr ai   l  +  v + de +s ld       l+  + i   l++   +it  h++ v+  +
  MMETSP1137-20121227|210_1 208 EAVDTLDLHPVFDREVDKLSGGELQRFAIGVVLVQKADVYMFDEPSSYLDVMQ---RLKAARAIRSLLQINTYVITveHDLSVLDYL 291
                555555555555666678********************************764...3555666666666655555522556666555 PP

  == domain 3    score: -0.1 bits;  conditional E-value: 1.6
  TIGR02314  32 qifgvigasgagkstlircv 51 
                +i+ ++g  g+gk+t+ir +
  MMETSP1137-20121227|210_1 384 EILVMLGQNGTGKTTFIRML 403
                678899************76 PP

  == domain 4    score: 12.0 bits;  conditional E-value: 0.00034
  TIGR02314 140 nlsggqkqrvaiaralasepkvllcdeatsaldpattqsilellkeinrrlgltillithemdvvkricdevavid 215
                 lsgg+ qrva+  al +   + l de ++ ld     +  +++k    + + t +++ h++ +   + d+v v +
  MMETSP1137-20121227|210_1 474 YLSGGELQRVALVIALGTPADIYLIDEPSAYLDSEQRITAAKVIKRFIMHAKKTGFIVEHDFIMATYLADRVIVYE 549
                69*******************************9998888899998888888899999998888888888887765 PP

>> TIGR00956  3a01205: pleiotropic drug resistance family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.0      0.21        10     787     813 ..     110     136 ..     107     144 .. 0.85
   2 !   10.3   0.0   0.00039     0.019     209     262 ..     225     278 ..     208     288 .. 0.90
   3 !    8.7   0.0    0.0012     0.059      80     120 ..     376     415 ..     345     439 .. 0.74
   4 !    9.4   0.0   0.00078     0.038     207     283 ..     472     547 ..     468     552 .. 0.88

  Alignments for each domain:
  == domain 1    score: 1.3 bits;  conditional E-value: 0.21
  TIGR00956 787 kPGkltALmGasGAGkttLlnvLaeRv 813
                + G++  L+G+ G Gk t l +La+++
  MMETSP1137-20121227|210_1 110 RAGQVLGLVGTNGIGKSTALKILAGKQ 136
                569999999999999999999999875 PP

  == domain 2    score: 10.3 bits;  conditional E-value: 0.00039
  TIGR00956 209 GvsGGerkRvsiaevlvakakiqcwDnatrGLDsatalefvkalktsaeilkat 262
                 +sGGe +R +i+ vlv ka ++++D+ +  LD    l+ ++a++   +i   +
  MMETSP1137-20121227|210_1 225 KLSGGELQRFAIGVVLVQKADVYMFDEPSSYLDVMQRLKAARAIRSLLQINTYV 278
                57*******************************************998886554 PP

  == domain 3    score: 8.7 bits;  conditional E-value: 0.0012
  TIGR00956  80 vdglikpgelvvvLGrPgsGcstlLksiasktegfkkgkes 120
                  g    +e++v+LG+ g+G++t+++ +a+ ++  + ++e+
  MMETSP1137-20121227|210_1 376 EPGSFTGSEILVMLGQNGTGKTTFIRMLAGMMNS-DGDEEA 415
                55667789*********************97754.333444 PP

  == domain 4    score: 9.4 bits;  conditional E-value: 0.00078
  TIGR00956 207 vRGvsGGerkRvsiaevlvakakiqcwDnatrGLDsatalefvkalktsaeilkatalvaiyqasqdayelFdkvvv 283
                v+ +sGGe +Rv++  +l ++a i+++D+ +  LDs   +  +k++k  +  +k+t ++  +     +y l d+v+v
  MMETSP1137-20121227|210_1 472 VKYLSGGELQRVALVIALGTPADIYLIDEPSAYLDSEQRITAAKVIKRFIMHAKKTGFIVEHDFIMATY-LADRVIV 547
                6779****************************************************9998777777666.5666655 PP

>> TIGR01271  CFTR_protein: cystic fibrosis transmembrane conductor regulator (CFTR)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.0      0.31        15    1244    1265 ..     111     132 ..      91     145 .. 0.66
   2 !    9.9   0.0   0.00047     0.023     548     586 ..     225     263 ..     205     306 .. 0.80
   3 !   18.6   0.0   1.2e-06   5.6e-05     446     594 ..     372     518 ..     337     554 .. 0.68

  Alignments for each domain:
  == domain 1    score: 0.6 bits;  conditional E-value: 0.31
  TIGR01271 1244 agqrvgllgrtgsgkstllsal 1265
                 agq +gl+g  g gkst l  l
  MMETSP1137-20121227|210_1  111 AGQVLGLVGTNGIGKSTALKIL 132 
                 4555566666666666555433 PP

  == domain 2    score: 9.9 bits;  conditional E-value: 0.00047
  TIGR01271 548 tlsggqrarislaravykdadlylldspfsyldvvteke 586
                 lsgg+  r ++   + + ad+y++d p syldv+   +
  MMETSP1137-20121227|210_1 225 KLSGGELQRFAIGVVLVQKADVYMFDEPSSYLDVMQRLK 263
                59*******************************987654 PP

  == domain 3    score: 18.6 bits;  conditional E-value: 1.2e-06
  TIGR01271 446 slklekg.....qllavagstgsgkssllmmilgelepsegki.khsgr..isfspqv.swimpgtikdniifglsydeyrytsvikacqleediallaekdktvlgeggit.lsggqrarislaravykdadlylldspfsyldvvtekeifesclck 594
                +lk+e g     ++l + g  g+gk++++ m+ g ++ s+g       r  +s+ pq+ s  + gt++      l + + r  s+    q+  d+ +       +l++  +  lsgg+  r++l  a+   ad+yl+d p +yld   e+ i  + + k
  MMETSP1137-20121227|210_1 372 KLKIEPGsftgsEILVMLGQNGTGKTTFIRMLAGMMN-SDGDEeAQVPRlnVSYKPQTiSPKFDGTVR-----MLLHKKIRDASI--NPQFMSDVMKP--MLMEPLMDQEVKyLSGGELQRVALVIALGTPADIYLIDEPSAYLDS--EQRITAAKVIK 518
                45555542222378999**************999776.555540455552267777752555667776.....466788888886..46888887654..34568899888549******************************94..55555554444 PP

>> TIGR01257  rim_protein: rim ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.3   0.0    0.0019     0.092    1952    1988 ..     100     135 ..      87     144 .. 0.81
   2 !    9.1   0.0   0.00055     0.027    1046    1131 ..     210     296 ..     182     312 .. 0.75
   3 !   10.5   0.1    0.0002    0.0097     953    1133 ..     380     548 ..     372     589 .. 0.72

  Alignments for each domain:
  == domain 1    score: 7.3 bits;  conditional E-value: 0.0019
  TIGR01257 1952 spavdrlcvgvrpgecfgllgvngagktttfkmltgd 1988
                 s  + rl v  r g+++gl+g ng gk+t++k+l+g 
  MMETSP1137-20121227|210_1  100 SFKLHRLPVP-RAGQVLGLVGTNGIGKSTALKILAGK 135 
                 4567788775.99*********************997 PP

  == domain 2    score: 9.1 bits;  conditional E-value: 0.00055
  TIGR01257 1046 ledtglhhkrneeaqdlsgglqrklsvaiafvgdakvvvldeptsgvdpysrrsiwdlllky.rsgrtiimsthhmdeadllgdria 1131
                 ++   lh   + e   lsgg  +++++ + +v  a v ++dep+s +d   r      +    +    +i   h +   d l d i+
  MMETSP1137-20121227|210_1  210 VDTLDLHPVFDREVDKLSGGELQRFAIGVVLVQKADVYMFDEPSSYLDVMQRLKAARAIRSLlQINTYVITVEHDLSVLDYLSDFIC 296 
                 344579999999*********99*************************998854433333330233445566677777777777765 PP

  == domain 3    score: 10.5 bits;  conditional E-value: 0.0002
  TIGR01257  953 fyenqitaflghngagktttlsiltgllpptsgtvlvggkdietnldavrqslgmcpqhnilfhhltvaehilfyaqlkgrsweeaqlemeamledtglhhkrneeaqdlsgglqrklsvaiafvgdakvvvldeptsgvdpysrrsiwdlllky..rsgrtiimsthhmdeadllgdriaii 1133
                 f  ++i  +lg+ng+gktt + +l+g++              + + ++ r  +   pq        t    +l++ +++  s +     m  +++   +    ++e + lsgg  +++++ ia+   a + ++dep++ +d   r +   ++ ++  ++ +t  +  h +  a  l dr+ + 
  MMETSP1137-20121227|210_1  380 FTGSEILVMLGQNGTGKTTFIRMLAGMMNSD----------GDEEAQVPRLNVSYKPQTISPKFDGT--VRMLLHKKIRDASINPQF--MSDVMKPMLMEPLMDQEVKYLSGGELQRVALVIALGTPADIYLIDEPSAYLDSEQRITAAKVIKRFimHAKKTGFIVEHDFIMATYLADRVIVY 548 
                 6667888899999999999999999987643..........23334455666666777544433444..468888888888876543..4444455556667788999999999999999999999999999999999999999988888877663356788888889999999999998654 PP

>> TIGR00957  MRP_assoc_pro: multi drug resistance-associated protein (MRP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.9   0.0   0.00046     0.022     760     870 ..     225     333 ..     208     370 .. 0.66
   2 !   18.5   0.0   1.2e-06   5.9e-05     759     833 ..     473     547 ..     372     565 .. 0.67

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 0.00046
  TIGR00957 760 nlsggqkqrvslaravysdadiyllddplsavdahvakhifekvigpkgllknktr.ilvthgisylpqv.dviivlsdgkisemgsyqelldrdgafaeflrtyasaedeld 870
                +lsgg+ qr ++   +  +ad+y++d+p s +d       ++     + ll+ +t  i v h +s l    d+i  l +      g     +     +  fl  + ++e+ + 
  MMETSP1137-20121227|210_1 225 KLSGGELQRFAIGVVLVQKADVYMFDEPSSYLDVMQR---LKAARAIRSLLQINTYvITVEHDLSVLDYLsDFICCLYG-IPGAYGVVTMPFGVREGINIFLAGFIPTENLRF 333
                59*****************************996533...233344467777666515688999998764266665543.333344443333333334556666666665544 PP

  == domain 2    score: 18.5 bits;  conditional E-value: 1.2e-06
  TIGR00957 759 vnlsggqkqrvslaravysdadiyllddplsavdahvakhifekvigpkgllknktrilvthgisylp.qvdviiv 833
                  lsgg+ qrv+l  a+ + adiyl+d+p + +d+   +    kvi    + ++kt  +v h + +    +d +iv
  MMETSP1137-20121227|210_1 473 KYLSGGELQRVALVIALGTPADIYLIDEPSAYLDSEQ-RITAAKVIKRFIMHAKKTGFIVEHDFIMATyLADRVIV 547
                369***************************99**974.55678999999999********9986443213455555 PP

>> TIGR01194  cyc_pep_trnsptr: cyclic peptide transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.3   0.0    0.0002    0.0095     342     397 ..      88     142 ..      69     258 .. 0.83
   2 !    9.0   0.0     0.002     0.098     365     391 ..     381     407 ..     350     414 .. 0.78
   3 ?    4.9   0.0     0.036       1.7     469     540 ..     474     546 ..     465     556 .. 0.81

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 0.0002
  TIGR01194 342 vrysykdvessegfalGpidlriasGelvyivGenGcGkstliklllGlyipqeGe 397
                +  +     s+++f+l  + +    G+++ +vG nG Gkst +k+l G  +p+ G+
  MMETSP1137-20121227|210_1  88 LGSNTTHRYSANSFKLHRLPVP-RAGQVLGLVGTNGIGKSTALKILAGKQKPNLGR 142
                5555566667777777766554.579999**********************99886 PP

  == domain 2    score: 9.0 bits;  conditional E-value: 0.002
  TIGR01194 365 asGelvyivGenGcGkstliklllGly 391
                +  e++ ++G+nG Gk+t+i++l G+ 
  MMETSP1137-20121227|210_1 381 TGSEILVMLGQNGTGKTTFIRMLAGMM 407
                4458999******************86 PP

  == domain 3    score: 4.9 bits;  conditional E-value: 0.036
  TIGR01194 469 dlstGqrkrlalvnayleerpvllldewaadqdpafkrvfyeellpdlkrrGktilvishddry.feladrli 540
                 ls G+ +r+alv a      ++l+de +a  d   +    + +   +    kt +++ hd      ladr+i
  MMETSP1137-20121227|210_1 474 YLSGGELQRVALVIALGTPADIYLIDEPSAYLDSEQRITAAKVIKRFIMHAKKTGFIVEHDFIMaTYLADRVI 546
                5899****************************98866555555555667778899999999654145888887 PP

>> TIGR01944  rnfB: electron transport complex, RnfABCDGE type, B subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.4   6.0   7.7e-08   3.7e-06      98     175 ..       8      94 ..       2     105 .. 0.70

  Alignments for each domain:
  == domain 1    score: 24.4 bits;  conditional E-value: 7.7e-08
  TIGR01944  98 eaekekekkvalideeeCi..GC.tkCiqaCPvD.....aivGaak.amhtvledlCtgCdlCvepCPvdcielrpvaeelkswkwd 175
                 +e+e+  ++a+++ e+C    C ++C + CPv       i  ++k ++    e+lC+gC +Cv++CP d+i++++ +++l s + +
  MMETSP1137-20121227|210_1   8 TKEEETLTRIAIVNSEKCKpsKCrQECKKSCPVVrmgkfCIEVTPKdKIAWLSEELCIGCGICVKKCPFDAIQIINLPKNLGSNTTH 94 
                344457899*********633464579*****962222235445551566667889********************99998765544 PP

>> TIGR00064  ftsY: signal recognition particle-docking protein FtsY
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   0.0     0.013      0.62      72     102 ..     105     135 ..      80     140 .. 0.76
   2 !   14.5   0.0     7e-05    0.0034      72     108 ..     376     412 ..     332     415 .. 0.62

  Alignments for each domain:
  == domain 1    score: 7.1 bits;  conditional E-value: 0.013
  TIGR00064  72 elkeekkpnvillvGvNGvGKTttiaKlakl 102
                +l+  +  +v+ lvG NG+GK t++  la +
  MMETSP1137-20121227|210_1 105 RLPVPRAGQVLGLVGTNGIGKSTALKILAGK 135
                555666778999************9888865 PP

  == domain 2    score: 14.5 bits;  conditional E-value: 7e-05
  TIGR00064  72 elkeekkpnvillvGvNGvGKTttiaKlakllkkegk 108
                e  + +   ++++ G NG+GKTt i  la +++++g 
  MMETSP1137-20121227|210_1 376 EPGSFTGSEILVMLGQNGTGKTTFIRMLAGMMNSDGD 412
                23345667899********************998875 PP

>> TIGR02951  DMSO_dmsB: dimethylsulfoxide reductase, chain B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.0   2.5   1.2e-06   5.9e-05      67     116 ..      30      83 ..       3      93 .. 0.75

  Alignments for each domain:
  == domain 1    score: 21.0 bits;  conditional E-value: 1.2e-06
  TIGR02951  67 cedpacvkacptgamyk.....reedGlvlvdqdkciGckycalacpygapqyee 116
                c    c k+cp   m k       +d +    ++ ciGc  c+ +cp++a q+ +
  MMETSP1137-20121227|210_1  30 CR-QECKKSCPVVRMGKfcievTPKDKIAWLSEELCIGCGICVKKCPFDAIQIIN 83 
                33.368899999988774444357999***********************99865 PP

>> TIGR02179  PorD_KorD: 2-oxoacid:acceptor oxidoreductase, delta subunit, pyruvate/2-ketoisovalerate family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   6.2   1.6e-06   7.8e-05      21      75 ..      19      82 ..       4      84 .. 0.75

  Alignments for each domain:
  == domain 1    score: 20.6 bits;  conditional E-value: 1.6e-06
  TIGR02179 21 vvdkekCi..kCk.lCvlyCp.....eaaikek.eekkveidYdyCkGCgiCaeeCpvkaiemv 75
               +v++ekC   kC+  C   Cp       +i+++ ++k + +  + C GCgiC+++Cp++ai+++
  MMETSP1137-20121227|210_1 19 IVNSEKCKpsKCRqECKKSCPvvrmgKFCIEVTpKDKIAWLSEELCIGCGICVKKCPFDAIQII 82
               7889999544785369999984433223777652455778899******************986 PP

>> TIGR01971  NuoI: NADH-quinone oxidoreductase, chain I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   0.2   8.9e-07   4.3e-05      40      79 ..      60      99 ..      53     103 .. 0.88

  Alignments for each domain:
  == domain 1    score: 20.9 bits;  conditional E-value: 8.9e-07
  TIGR01971 40 GeekCiaCelCakvCpaeaikvvkaeeekgkrrlkkyein 79
                ee Ci+C +C+k Cp +ai++++  ++ g+  +++y+ n
  MMETSP1137-20121227|210_1 60 SEELCIGCGICVKKCPFDAIQIINLPKNLGSNTTHRYSAN 99
               5799********************9999999999988876 PP

>> TIGR04105  FeFe_hydrog_B1: [FeFe] hydrogenase, group B1/B3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   6.0   1.6e-06   7.9e-05     116     162 ..      30      82 ..       9      93 .. 0.48

  Alignments for each domain:
  == domain 1    score: 19.3 bits;  conditional E-value: 1.6e-06
  TIGR04105 116 ClakkCieaCpkg.....aisv..vekkayidkekCieCGkCkkaCpYnAivel 162
                C  ++C+++Cp+      +i+v  ++k a + +e Ci CG C+k Cp++Ai  +
  MMETSP1137-20121227|210_1  30 C-RQECKKSCPVVrmgkfCIEVtpKDKIAWLSEELCIGCGICVKKCPFDAIQII 82 
                1.2334444443211111333322344455555555555555555555555554 PP

>> TIGR02512  FeFe_hydrog_A: [FeFe] hydrogenase, group A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   5.1   2.9e-05    0.0014       5      69 ..      21      81 ..      17      96 .. 0.65

  Alignments for each domain:
  == domain 1    score: 15.4 bits;  conditional E-value: 2.9e-05
  TIGR02512  5 dvskCilCerCvkaCekvqev....kalkalneklktevatkleklldeseCisCGqCvlvCpvgaite 69
               + +kC+  ++C + C+k   v    k++ +++ k k          l+e+ Ci+CG Cv  Cp++ai+ 
  MMETSP1137-20121227|210_1 21 NSEKCKP-SKCRQECKKSCPVvrmgKFCIEVTPKDK-------IAWLSEELCIGCGICVKKCPFDAIQI 81
               6678863.4455555555555000044443333333.......3567889****************985 PP

>> TIGR01582  FDH-beta: formate dehydrogenase, beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   2.2   7.2e-05    0.0035      95     141 ..      29      79 ..       5      90 .. 0.68

  Alignments for each domain:
  == domain 1    score: 14.3 bits;  conditional E-value: 7.2e-05
  TIGR01582  95 hcaepgclkacpap..ga.i..iqyangivdfdhekcigcgyciagcpfnip 141
                +c++  c k+cp    g     +  ++ i  +++e cigcg+c++ cpf+  
  MMETSP1137-20121227|210_1  29 KCRQ-ECKKSCPVVrmGKfCieVTPKDKIAWLSEELCIGCGICVKKCPFDAI 79 
                4554.577788764223212124456788889999**************964 PP

>> TIGR03499  FlhF: flagellar biosynthesis protein FlhF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   0.1     0.019      0.91     192     221 ..     106     135 ..      89     142 .. 0.82
   2 ?    6.8   0.1     0.027       1.3     190     220 ..     376     405 ..     347     415 .. 0.80

  Alignments for each domain:
  == domain 1    score: 7.3 bits;  conditional E-value: 0.019
  TIGR03499 192 deilekggviaLvGptGvGKTTTlAKLAar 221
                 ++ + g+v+ LvG  G+GK T l  LA +
  MMETSP1137-20121227|210_1 106 LPVPRAGQVLGLVGTNGIGKSTALKILAGK 135
                56667899***************9888876 PP

  == domain 2    score: 6.8 bits;  conditional E-value: 0.027
  TIGR03499 190 eedeilekggviaLvGptGvGKTTTlAKLAa 220
                e  ++   + +++++G+ G GKTT +  LA 
  MMETSP1137-20121227|210_1 376 EPGSFTGSE-ILVMLGQNGTGKTTFIRMLAG 405
                444454444.9*************9888876 PP

>> TIGR02936  fdxN_nitrog: ferredoxin III, nif-specific
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   1.3       6.6   3.2e+02      56      86 ..       9      38 ..       3      43 .. 0.64
   2 !   16.0   0.1   4.3e-05    0.0021      17      42 ..      58      83 ..      49      95 .. 0.82

  Alignments for each domain:
  == domain 1    score: -0.6 bits;  conditional E-value: 6.6
  TIGR02936 56 deeiekkvmvlaneenCiGCeaCarvCpkkc 86
               +ee++ + +++ n+e+C   + C + C k+c
  MMETSP1137-20121227|210_1  9 KEEETLTRIAIVNSEKCKP-SKCRQECKKSC 38
               3444455567778888865.45777777776 PP

  == domain 2    score: 16.0 bits;  conditional E-value: 4.3e-05
  TIGR02936 17 sideekCigCgrCfkvCgrdvlelkg 42
                ++ee CigCg C k C+ d +++ +
  MMETSP1137-20121227|210_1 58 WLSEELCIGCGICVKKCPFDAIQIIN 83
               57889999999999999999888765 PP

>> TIGR00954  3a01203: peroxysomal long chain fatty acyl transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   0.2     0.047       2.3     478     612 ..     111     254 ..      76     294 .. 0.54
   2 ?    6.5   0.0     0.011      0.52     477     523 ..     376     427 ..     336     438 .. 0.73

  Alignments for each domain:
  == domain 1    score: 4.4 bits;  conditional E-value: 0.047
  TIGR00954 478 sGnhlLiiGPnGcGKsslfRilgelW.PvygglltkpeegklF..yv..PqrPYmslg..tlRdqiiYPdssedfkerglsdkdLeqiLeevkLedlleregg...wdavqdW.kdvLsgGekqRiamARlfyHkPkfavLDEcts 612
                 G+ l ++G nG GKs   +il++   P  g     p  +++   +     + Y+++        ii P+ ++ +  + ++ k + +iL++ +  d +++ +    +  v d   d LsgGe qR a+  ++  k    + DE  s
  MMETSP1137-20121227|210_1 111 AGQVLGLVGTNGIGKSTALKILAGKQkPNLGRFENPPDWQEILahFRgsELQNYFTKIleDDMKAIIKPQYVDHI-PKAVKGK-VGEILKKKDERDAITEAVDtldLHPVFDReVDKLSGGELQRFAIGVVLVQKADVYMFDEPSS 254
                566666788888888888888876431333322222222333211111112334443211111234444433332.2222222.23334333333333333333333333332146667777777666666666666666666655 PP

  == domain 2    score: 6.5 bits;  conditional E-value: 0.011
  TIGR00954 477 k....sGnhlLi.iGPnGcGKsslfRilgelWPvygglltkpeegklFyvPq 523
                +     G+++L+ +G nG GK  + R+l+++    g    + ++ ++ y Pq
  MMETSP1137-20121227|210_1 376 EpgsfTGSEILVmLGQNGTGKTTFIRMLAGMMNSDGDEEAQVPRLNVSYKPQ 427
                25555788888737****************9777665555555555666555 PP

>> TIGR02397  dnaX_nterm: DNA polymerase III, subunit gamma and tau
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.0      0.65        31      41      57 ..     117     133 ..     106     138 .. 0.89
   2 !    9.8   0.0     0.002     0.094      40      66 ..     387     413 ..     383     420 .. 0.84

  Alignments for each domain:
  == domain 1    score: 1.5 bits;  conditional E-value: 0.65
  TIGR02397  41 fsGprGvGKTsiArilA 57 
                + G+ G+GK +  +ilA
  MMETSP1137-20121227|210_1 117 LVGTNGIGKSTALKILA 133
                68**************9 PP

  == domain 2    score: 9.8 bits;  conditional E-value: 0.002
  TIGR02397  40 LfsGprGvGKTsiArilAkalNCenke 66 
                ++ G+ G+GKT+  r+lA  +N    e
  MMETSP1137-20121227|210_1 387 VMLGQNGTGKTTFIRMLAGMMNSDGDE 413
                678*******************87655 PP

>> TIGR03294  FrhG: coenzyme F420 hydrogenase, subunit gamma
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   0.9   0.00019    0.0091     172     200 ..      60      88 ..      18     109 .. 0.80

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 0.00019
  TIGR03294 172 nkslcmGcGtcaaacptraielvdGrpev 200
                 + lc+GcG c   cp  ai++++   ++
  MMETSP1137-20121227|210_1  60 SEELCIGCGICVKKCPFDAIQIINLPKNL 88 
                56789999999999999998888765555 PP

>> TIGR03048  PS_I_psaC: photosystem I iron-sulfur protein PsaC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   0.1   0.00029     0.014       9      28 ..      63      82 ..      59      93 .. 0.88

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 0.00029
  TIGR03048  9 tciGctqcvracptdvlemv 28
                ciGc  cv+ cp d+++++
  MMETSP1137-20121227|210_1 63 LCIGCGICVKKCPFDAIQII 82
               6***************9987 PP

>> TIGR00397  mauM_napG: MauM/NapG family ferredoxin-type protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   1.3       1.4        67     159     198 ..       7      52 ..       4      57 .. 0.64
   2 !   14.1   0.3   0.00012    0.0057      54      74 ..      63      83 ..      55      99 .. 0.67

  Alignments for each domain:
  == domain 1    score: 0.8 bits;  conditional E-value: 1.4
  TIGR00397 159 piknergllqipvvdsakctg..c.gtcekhcv...lseaairvlp 198
                  k e+ l +i +v+s kc    c   c+k c    +++ +i v p
  MMETSP1137-20121227|210_1   7 ATKEEETLTRIAIVNSEKCKPskCrQECKKSCPvvrMGKFCIEVTP 52 
                5678889999*********751142357777731123445555555 PP

  == domain 2    score: 14.1 bits;  conditional E-value: 0.00012
  TIGR00397 54 acvrcglcveacpldilklas 74
                c+ cg+cv++cp+d +++ +
  MMETSP1137-20121227|210_1 63 LCIGCGICVKKCPFDAIQIIN 83
               477777777777777766554 PP

>> TIGR00403  ndhI: NADH-plastoquinone oxidoreductase, I subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.8   0.3    0.0003     0.014      70     147 ..      30     108 ..       5     130 .. 0.76

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 0.0003
  TIGR00403  70 cvrvcpinlpvvdw.elekaikkkelknysidfgvcifcgncveycptnclsmte.eyelstydrhelnydqialgrlpi 147
                c + c    pvv   ++  ++  k+   + +   +ci cg cv+ cp + + + +   +l +   h    +   l rlp+
  MMETSP1137-20121227|210_1  30 CRQECKKSCPVVRMgKFCIEVTPKDKIAW-LSEELCIGCGICVKKCPFDAIQIINlPKNLGSNTTHRYSANSFKLHRLPV 108
                66666666677654356666666654444.44578**************9998763578999999999999999999997 PP

>> TIGR02700  flavo_MJ0208: archaeoflavoprotein, MJ0208 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.3   5.6   0.00033     0.016     145     195 ..      20      80 ..       8      86 .. 0.70

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 0.00033
  TIGR02700 145 idrkkck..lc.ekcvdacprea.......iskkdgvveirllkclGcGkckevcpynaik 195
                ++ +kck  +c + c ++cp          ++ kd ++ ++   c+GcG+c + cp +ai+
  MMETSP1137-20121227|210_1  20 VNSEKCKpsKCrQECKKSCPVVRmgkfcieVTPKDKIAWLSEELCIGCGICVKKCPFDAIQ 80 
                56677763345246888888643111111134578888888889***************96 PP

>> TIGR03336  IOR_alpha: indolepyruvate ferredoxin oxidoreductase, alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.6   7.2   0.00028     0.014     538     595 .]      11      79 ..       3      79 .. 0.69

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 0.00028
  TIGR03336 538 akvkavklkvdeekCi..kCkkCikelgCPaie.........eedkevvidkl.CsgCgvCvqvCpvdai 595
                 ++ ++   v++ekC+  kC++  k  +CP ++         ++dk + +++  C+gCg+Cv+ Cp+dai
  MMETSP1137-20121227|210_1  11 EETLTRIAIVNSEKCKpsKCRQECK-KSCPVVRmgkfcievtPKDKIAWLSEElCIGCGICVKKCPFDAI 79 
                4455566779999995447876444.4888776555554465666766666555***************8 PP

>> TIGR02169  SMC_prok_A: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0         3   1.5e+02    1074    1123 ..     224     269 ..     221     281 .. 0.75
   2 ?    9.9   0.1   0.00057     0.028    1072    1133 ..     471     531 ..     468     546 .. 0.83

  Alignments for each domain:
  == domain 1    score: -2.4 bits;  conditional E-value: 3
  TIGR02169 1074 eamSGGEKsltALsfifAiQrykPspfYafDEvDmfLDgvNvervaklik 1123
                 + +SGGE    A+  +  +Q+   + +Y+fDE   +LD +   + a+ i+
  MMETSP1137-20121227|210_1  224 DKLSGGELQRFAIGVVL-VQK---ADVYMFDEPSSYLDVMQRLKAARAIR 269 
                 56778887777777654.665...899***********877666666665 PP

  == domain 2    score: 9.9 bits;  conditional E-value: 0.00057
  TIGR02169 1072 rleamSGGEKsltALsfifAiQrykPspfYafDEvDmfLDg...vNvervaklikekakeaQfiv 1133
                  ++ +SGGE  l   +++ A+   +P+ +Y++DE  ++LD    + + +v+k+   +ak++ fiv
  MMETSP1137-20121227|210_1  471 EVKYLSGGE--LQRVALVIALG--TPADIYLIDEPSAYLDSeqrITAAKVIKRFIMHAKKTGFIV 531 
                 56679***9..67777899996..7***************73336789999999999****9998 PP

>> TIGR00602  rad24: checkpoint protein rad24
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   0.0     0.003      0.14     110     145 ..     112     147 ..     100     166 .. 0.85
   2 ?    0.7   0.0      0.63        30     111     131 ..     384     404 ..     376     411 .. 0.89

  Alignments for each domain:
  == domain 1    score: 8.4 bits;  conditional E-value: 0.003
  TIGR00602 110 kriLLitGPsGCgKsTvikiLsKelgikvqewlNpv 145
                 ++L + G  G gKsT++kiL+ +  +++  + Np 
  MMETSP1137-20121227|210_1 112 GQVLGLVGTNGIGKSTALKILAGKQKPNLGRFENPP 147
                47999*****************99999999988885 PP

  == domain 2    score: 0.7 bits;  conditional E-value: 0.63
  TIGR00602 111 riLLitGPsGCgKsTvikiLs 131
                 iL + G  G gK+T i++L+
  MMETSP1137-20121227|210_1 384 EILVMLGQNGTGKTTFIRMLA 404
                5999***************98 PP

>> TIGR02060  aprB: adenylylsulfate reductase, beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   2.8   0.00082     0.039       4      64 ..      19      81 ..      17     103 .. 0.78

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 0.00082
  TIGR02060  4 fvdpekcdgckalektacvyicpndlm...tld.kekrkaynrepdmcwecyscvkicpqgaidv 64
               +v+ ekc   k   + +c++ cp   m    ++ + k k      ++c  c  cvk cp +ai++
  MMETSP1137-20121227|210_1 19 IVNSEKCKPSK--CRQECKKSCPVVRMgkfCIEvTPKDKIAWLSEELCIGCGICVKKCPFDAIQI 81
               68999999888..678899999976663333441345566666779*****************87 PP

>> TIGR03287  methan_mark_16: putative methanogenesis marker 16 metalloprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   4.3    0.0013     0.061     300     349 ..      21      81 ..      10      92 .. 0.63

  Alignments for each domain:
  == domain 1    score: 9.6 bits;  conditional E-value: 0.0013
  TIGR03287 300 nperClnCkvCl..veekCPveaikk..........dkeldtedCfgCGvCaeiCpsgvvev 349
                n e+C+   +C+   ++ CPv  + k           + l++e C gCG+C++ Cp +++++
  MMETSP1137-20121227|210_1  21 NSEKCKPS-KCRqeCKKSCPVVRMGKfcievtpkdkIAWLSEELCIGCGICVKKCPFDAIQI 81 
                44555432.2220123455555544444444443224457899*************998764 PP

>> TIGR00314  cdhA: CO dehydrogenase/acetyl-CoA synthase complex, epsilon subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   2.7    0.0012     0.059     386     466 ..       9      92 ..       1     111 [. 0.65

  Alignments for each domain:
  == domain 1    score: 8.9 bits;  conditional E-value: 0.0012
  TIGR00314 386 kkledeeelvelakkctecgnctlacpnslrvkealakakk.Gdlskleel.eelclacgrceqvcp.knipivslvtkaaeer 466
                k+ e+  ++  + ++  + ++c++ c +s +v    +   +    +k++ l eelc++cg c + cp   i+i++l ++ + + 
  MMETSP1137-20121227|210_1   9 KEEETLTRIAIVNSEKCKPSKCRQECKKSCPVVRMGKFCIEvTPKDKIAWLsEELCIGCGICVKKCPfDAIQIINLPKNLGSNT 92 
                3333334433333333345678888888888777666555536677777776899************4579****988877654 PP

>> TIGR02912  sulfite_red_C: sulfite reductase, subunit C
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   4.2    0.0017     0.083     175     218 ..      32      79 ..      14      84 .. 0.66

  Alignments for each domain:
  == domain 1    score: 9.7 bits;  conditional E-value: 0.0017
  TIGR02912 175 gacvkvckkkavgalsle....nykvvreeekcigcgecvlkcptgaw 218
                + c k+c    +g + +e    +  +  +ee cigcg cv+kcp  a 
  MMETSP1137-20121227|210_1  32 QECKKSCPVVRMGKFCIEvtpkDKIAWLSEELCIGCGICVKKCPFDAI 79 
                45666776666665444311112334457899************8876 PP

>> TIGR00152  TIGR00152: dephospho-CoA kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   0.2      0.03       1.4       1      22 [.     114     135 ..     114     140 .. 0.89
   2 ?    2.0   0.0      0.74        36       4      20 ..     388     404 ..     385     409 .. 0.85

  Alignments for each domain:
  == domain 1    score: 6.5 bits;  conditional E-value: 0.03
  TIGR00152   1 iigltGgigsGKstvakilkdk 22 
                + gl+G  g GKst +kil+ k
  MMETSP1137-20121227|210_1 114 VLGLVGTNGIGKSTALKILAGK 135
                689****************977 PP

  == domain 2    score: 2.0 bits;  conditional E-value: 0.74
  TIGR00152   4 ltGgigsGKstvakilk 20 
                + G+ g+GK+t +++l+
  MMETSP1137-20121227|210_1 388 MLGQNGTGKTTFIRMLA 404
                6799**********997 PP

>> TIGR01945  rnfC: electron transport complex, RnfABCDGE type, C subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   4.2     0.018      0.85     370     417 ..      33      77 ..      10      92 .. 0.61
   2 ?   -1.7   0.0       3.5   1.7e+02      24      78 ..     474     530 ..     455     542 .. 0.50

  Alignments for each domain:
  == domain 1    score: 5.9 bits;  conditional E-value: 0.018
  TIGR01945 370 kCveaCPvsLlPqqlallakaeeydeaeelnlmDCieCGsCayvCPsk 417
                +C ++CPv  + +   + + +++   ++ l    Ci CG+C   CP +
  MMETSP1137-20121227|210_1  33 ECKKSCPVVRMGKFCIEVTPKDK---IAWLSEELCIGCGICVKKCPFD 77 
                56666666666655555544443...3334444467777776666643 PP

  == domain 2    score: -1.7 bits;  conditional E-value: 3.5
  TIGR01945  24 klplpkelvvplkqhiGapaepiv..kvgdkvlkgqliakaeglvsapvHapvsGtv 78 
                 l+  +   v l   +G+pa+  +  +   +    q i+ a+ +    +Ha  +G +
  MMETSP1137-20121227|210_1 474 YLSGGELQRVALVIALGTPADIYLidEPSAYLDSEQRITAAKVIKRFIMHAKKTGFI 530
                333333333444444444444322112223333445555555555555555555555 PP

>> TIGR02163  napH_: ferredoxin-type protein, NapH/MauN family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   6.5     0.017      0.83     192     253 ..      14      81 ..      10      83 .. 0.73

  Alignments for each domain:
  == domain 1    score: 6.9 bits;  conditional E-value: 0.017
  TIGR02163 192 llkiaaedkekCd..kC.mdClevCpekqvlelalkk...eestlvlsgdCisCgrCidvCeedvlef 253
                l +ia+ ++ekC+  kC  +C + Cp+ ++ +   +    ++   ++++ Ci Cg C+  C+ d++++
  MMETSP1137-20121227|210_1  14 LTRIAIVNSEKCKpsKCrQECKKSCPVVRMGKFCIEVtpkDKIAWLSEELCIGCGICVKKCPFDAIQI 81 
                66888888899954489447*****9988765554443325555566677************999876 PP

>> TIGR04041  activase_YjjW: glycine radical enzyme activase, YjjW family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   5.9     0.044       2.1      45      86 ..      29      78 ..      20      86 .. 0.64

  Alignments for each domain:
  == domain 1    score: 5.5 bits;  conditional E-value: 0.044
  TIGR04041 45 sC.geCveeCpagalsled......gkvvwd.kekCveCdeCikvCkkks 86
               +C +eC ++Cp+  +          +k+ w  +e C++C  C+k C+ ++
  MMETSP1137-20121227|210_1 29 KCrQECKKSCPVVRMGKFCievtpkDKIAWLsEELCIGCGICVKKCPFDA 78
               45246888888765432111133348999962567999999999999765 PP

>> TIGR00929  VirB4_CagE: type IV secretion/conjugal transfer ATPase, VirB4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.4       7.4   3.6e+02     443     458 ..     118     133 ..     111     136 .. 0.89
   2 ?    7.3   0.2    0.0051      0.25     442     461 ..     388     407 ..     386     412 .. 0.89

  Alignments for each domain:
  == domain 1    score: -3.1 bits;  conditional E-value: 7.4
  TIGR00929 443 fGptgsGKTvllnfll 458
                +G++g GK++ l++l+
  MMETSP1137-20121227|210_1 118 VGTNGIGKSTALKILA 133
                7***********9996 PP

  == domain 2    score: 7.3 bits;  conditional E-value: 0.0051
  TIGR00929 442 IfGptgsGKTvllnfllaql 461
                ++G++g+GKT+++ +l+ ++
  MMETSP1137-20121227|210_1 388 MLGQNGTGKTTFIRMLAGMM 407
                89**************8776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (709 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       272  (0.0663091); expected 82.0 (0.02)
Passed bias filter:                      263  (0.0641151); expected 82.0 (0.02)
Passed Vit filter:                       145  (0.0353486); expected 4.1 (0.001)
Passed Fwd filter:                        85  (0.0207216); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              85  [number of targets reported over threshold]
# CPU time: 2.18u 0.23s 00:00:02.41 Elapsed: 00:00:01.71
# Mc/sec: 547.25
//
Query:       MMETSP1137-20121227|211_1  [L=59]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (59 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        23  (0.00560702); expected 82.0 (0.02)
Passed bias filter:                       22  (0.00536324); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.13s 00:00:00.26 Elapsed: 00:00:00.26
# Mc/sec: 299.51
//
Query:       MMETSP1137-20121227|213_1  [L=394]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0042   13.9   0.0       0.01   12.6   0.0    1.5  2  TIGR00033 aroC: chorismate synthase


Domain annotation for each model (and alignments):
>> TIGR00033  aroC: chorismate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0      0.16   6.6e+02      20      46 ..      67      93 ..      65      99 .. 0.83
   2 !   12.6   0.0   2.5e-06      0.01       8      46 ..     122     161 ..     121     169 .. 0.86

  Alignments for each domain:
  == domain 1    score: -3.2 bits;  conditional E-value: 0.16
  TIGR00033 20 GlPaglelteediqkelkrRrpgqsrl 46
               G P gl l+e++ +k+   Rr  +s  
  MMETSP1137-20121227|213_1 67 GSPDGLDLEEAQKAKATCNRRTEYSAS 93
               789999999999999999999888765 PP

  == domain 2    score: 12.6 bits;  conditional E-value: 2.5e-06
  TIGR00033   8 eSHgkalgai.idGlPaglelteediqkelkrRrpgqsrl 46 
                +SHg+ l+ + idG+P+++  ++  ++kel+rR   +s +
  MMETSP1137-20121227|213_1 122 NSHGADLSGVeIDGIPSNFVYHQPSLAKELQRRSSVESPV 161
                69****98777**********************9988765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (394 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        57  (0.0138957); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.28u 0.14s 00:00:00.42 Elapsed: 00:00:00.34
# Mc/sec: 1529.52
//
Query:       MMETSP1137-20121227|214_1  [L=450]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (450 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       103  (0.0251097); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.15s 00:00:00.47 Elapsed: 00:00:00.32
# Mc/sec: 1856.10
//
Query:       MMETSP1137-20121227|216_1  [L=345]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (345 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        61  (0.0148708); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.17s 00:00:00.43 Elapsed: 00:00:00.38
# Mc/sec: 1198.32
//
Query:       MMETSP1137-20121227|217_1  [L=81]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (81 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        37  (0.00901999); expected 82.0 (0.02)
Passed bias filter:                       33  (0.00804486); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.13s 00:00:00.25 Elapsed: 00:00:00.25
# Mc/sec: 427.64
//
Query:       MMETSP1137-20121227|218_1  [L=484]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (484 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        86  (0.0209654); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.16s 00:00:00.48 Elapsed: 00:00:00.47
# Mc/sec: 1359.21
//
Query:       MMETSP1137-20121227|219_1  [L=460]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   6.1e-103  342.4   0.0   7.5e-103  342.1   0.0    1.1  1  TIGR00233 trpS: tryptophan--tRNA ligase
    1.9e-10   38.2   0.0    2.5e-10   37.9   0.0    1.1  1  TIGR00234 tyrS: tyrosine--tRNA ligase


Domain annotation for each model (and alignments):
>> TIGR00233  trpS: tryptophan--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  342.1   0.0  3.6e-106  7.5e-103       2     328 .]     120     451 ..     119     451 .. 0.96

  Alignments for each domain:
  == domain 1    score: 342.1 bits;  conditional E-value: 3.6e-106
  TIGR00233   2 kkrvltGiqpsGklhlGnylgairtkveq.qeevelfiqvaDlhaitvkkltdeealrkaveelvadilAvGlDpekttiflqsevpehselavllskkvtlgelkritqfkdksqeen...vsiGllsypvlqaAdiLlyqadlVPvgeDqkqhleltRdlaerfnkkfkk....vfklPelliskffarlmglqd..kKMSkSdpn..saIfLtdepkeikkKikkaatdsgretleeerekpgvpellviyellskeeeddkkleedlekeksgkllygelKkalievlqeflkelqekreevaee..eldkileagakkaretaektlakvkkalGl 328
                k rvl+G+qp+G lhlGnylga+++++    ++ e+f++ +Dlhait+++  +++ l ka+   +a +lA GlDp k+++f+qs+v +hsela+ll++++ +g+l+r++q+k+ksq++    vs+Gl++ypvl+aAdiLlyqa++VPvgeDq qhlel+Rd+a+rfn+++ k       lPe+li k+ ar+m+lqd   KMSkS +n  s I+++d+p+ei+ Kikk++tds + + +++ e+p+  +ll iye+++  ++      e++++e ++  ++g +K  l++++++ l+++q++++e++e+  ++ ++l +ga+ a+ +a++tl ++k  +G+
  MMETSP1137-20121227|219_1 120 KRRVLSGMQPTGVLHLGNYLGAMKQWIANqDDGNENFYCAVDLHAITAPH--EPKELTKATYRTIALYLAAGLDPTKSKVFVQSHVSAHSELAWLLNCVTPMGWLERMIQYKEKSQKQDserVSVGLFDYPVLMAADILLYQATHVPVGEDQRQHLELARDIARRFNDMYCKnkkrGVXLPEALILKSNARVMSLQDgtAKMSKSAENdlSRINMLDTPDEIRRKIKKCKTDSLKGVGYDP-ERPEANNLLGIYEAMTGMTK------EQVAAEAATWTGWGTFKPLLADAIISHLEPIQQRYKEITEDkeYVTSVLAEGAEAANTIATRTLDNTKRSMGF 451
                679************************99456789***************..***************************************************************5555678************************************************766777899********************************************************999988.9*****************99......999999999999**************************99999*****************************8 PP

>> TIGR00234  tyrS: tyrosine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.9   0.0   1.2e-13   2.5e-10      34     271 ..     119     349 ..      99     443 .. 0.83

  Alignments for each domain:
  == domain 1    score: 37.9 bits;  conditional E-value: 1.2e-13
  TIGR00234  34 eklklylGvdPtaqslHlGhlv.plkkLrdfqqaGhevvvligdataligdpsgkkevrkvleeeevqenaesikkqlarfldfdkgklkfvnnsewlkklnyldfirdlgkifsvnrmlardafssRleenglslsefiYpllQayDfvaLdkddlqlGGsDQwgNilagidLirrnlps..k...kqfgltvpLltkadGekmGksegga.vsldesspydfyqkvintpdelvkkilklftf 271
                 k ++  G+ Pt+  lHlG+++  +k   + q+ G e      d++a i  p ++ke+ k           ++i   la +ld  + k k+ + s+     ++  ++  +  +  ++rm++ ++ s++++++ +s+  f Yp+l a D+   ++ ++ + G DQ+  +   +d++rr++    k   + + l+  L+ k++  +m+++ g a +s +  +   + +++++tpde+++ki+k  t+
  MMETSP1137-20121227|219_1 119 SKRRVLSGMQPTG-VLHLGNYLgAMKQWIANQDDGNENFYCAVDLHA-ITAPHEPKELTKATY--------RTIALYLAAGLD--PTKSKVFVQSHVSAHSELAWLLNCVTPMGWLERMIQYKEKSQKQDSERVSVGLFDYPVLMAADILLYQATHVPV-GEDQRQHLELARDIARRFNDMycKnkkRGVXLPEALILKSNARVMSLQDGTAkMSKSA-ENDLSRINMLDTPDEIRRKIKKCKTD 349
                4678999******.*******9456778999***************9.678999999888777........79*********9..456888888888888888888888888888*****************9****************9888879999.59***************987542243356777778***********988865144444.45557899*************98776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (460 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        97  (0.023647); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.37u 0.17s 00:00:00.54 Elapsed: 00:00:00.56
# Mc/sec: 1065.18
//
Query:       MMETSP1137-20121227|220_1  [L=131]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (131 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       325  (0.0792296); expected 82.0 (0.02)
Passed bias filter:                      197  (0.0480254); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.19s 00:00:00.37 Elapsed: 00:00:00.37
# Mc/sec: 467.31
//
Query:       MMETSP1137-20121227|221_1  [L=118]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (118 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       108  (0.0263286); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.16s 00:00:00.31 Elapsed: 00:00:00.33
# Mc/sec: 471.96
//
Query:       MMETSP1137-20121227|222_1  [L=300]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00039   17.5   0.2      0.022   11.8   0.0    2.8  3  TIGR02027 rpoA: DNA-directed RNA polymerase, alpha subunit


Domain annotation for each model (and alignments):
>> TIGR02027  rpoA: DNA-directed RNA polymerase, alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.8   0.0   5.3e-06     0.022      16      39 ..       5      28 ..       3      35 .. 0.89
   2 ?   -0.2   0.0     0.025     1e+02      96     134 ..     120     158 ..     111     169 .. 0.82
   3 !    1.5   0.1    0.0074        30     174     210 ..     238     274 ..     230     298 .. 0.72

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 5.3e-06
  TIGR02027 16 TlGnaLRRvLLssiegaaitavki 39
                ++na+RR+LLs+++ +ai +v i
  MMETSP1137-20121227|222_1  5 AIANAFRRILLSEVPTMAIEKVFI 28
               589****************98865 PP

  == domain 2    score: -0.2 bits;  conditional E-value: 0.025
  TIGR02027  96 aeegevEvvnpdlviatltedakleielkverGrGyvpa 134
                ++++++  v +d  ia+l   +++ +e   e+G G + a
  MMETSP1137-20121227|222_1 120 FKDQSIGPVHNDILIAKLRPGQEIALECWCEKGVGKTHA 158
                4566677789999**************999999997655 PP

  == domain 3    score: 1.5 bits;  conditional E-value: 0.0074
  TIGR02027 174 ydkLileieTdgsispkeAlaeAakilkehlevfvel 210
                 ++ i+ ie +g + p+  +++A+++l ++   + +l
  MMETSP1137-20121227|222_1 238 RNHFIFTIESTGVMPPEMLFKQAVQVLMQKSADLSQL 274
                57899*********************98876555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (300 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        88  (0.0214529); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.26u 0.14s 00:00:00.40 Elapsed: 00:00:00.34
# Mc/sec: 1164.61
//
Query:       MMETSP1137-20121227|223_1  [L=374]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (374 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        43  (0.0104827); expected 82.0 (0.02)
Passed bias filter:                       41  (0.00999512); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.16s 00:00:00.44 Elapsed: 00:00:00.38
# Mc/sec: 1299.05
//
Query:       MMETSP1137-20121227|224_1  [L=249]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.7e-50  167.3   0.0    9.5e-50  167.0   0.0    1.1  1  TIGR01091 upp: uracil phosphoribosyltransferase
    2.3e-05   21.3   0.0    2.9e-05   20.9   0.0    1.1  1  TIGR01251 ribP_PPkin: ribose-phosphate diphosphokinase
     0.0025   15.8   0.0     0.0039   15.2   0.0    1.3  1  TIGR01090 apt: adenine phosphoribosyltransferase


Domain annotation for each model (and alignments):
>> TIGR01091  upp: uracil phosphoribosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  167.0   0.0   6.9e-53   9.5e-50       8     207 .]      47     249 .]      40     249 .] 0.97

  Alignments for each domain:
  == domain 1    score: 167.0 bits;  conditional E-value: 6.9e-53
  TIGR01091   8 pLikhkltvlRdketetkefrellkelgsllayeatkdleleevevetplgeakakelkdkk.vvlvpiLrAglglvegvlkllpeakvglvglkRdeetlkievyysklpedieerevivlDPmlAtGgtvvealellkekgakk..ikvlsivaapeglekvekahpdveiyvaaidekLnekgYIvPGLGDaGDrafgtk 207
                p ++   +++Rd++++t++f    + l ++l+ ea   l+ +e++++tp+g+ ++ ++ + + ++ ++i+rA+  ++ ++ +++p++ vg + ++Rde t  ++  y+klp++ ++r+v++lDPmlAtGg+ ++a++ l e+ga++  i ++s+++  +gl++v+ a+p v+i + a+d+ Lnek+YIvPGLGD GDr fgt+
  MMETSP1137-20121227|224_1  47 PRVRALYSTIRDSRCTTEQFVVNSDLLVHILLEEALGLLPEVEIDIQTPCGHFNGCQIPGVEqLCAISIMRAADCMLGALRNIFPAVAVGKILIQRDEATATPQLMYTKLPSQLSHRHVLLLDPMLATGGSCIAAIKVLIEQGAAEdrIIFISVLSCNDGLNAVHAAYPRVRIVTGAVDPILNEKKYIVPGLGDFGDRYFGTE 249
                66788889***************************************************9988********************************************************************************99999*****************************************************95 PP

>> TIGR01251  ribP_PPkin: ribose-phosphate diphosphokinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   0.0   2.1e-08   2.9e-05     196     259 ..     148     211 ..     132     233 .. 0.74

  Alignments for each domain:
  == domain 1    score: 20.9 bits;  conditional E-value: 2.1e-08
  TIGR01251 196 enevevtnllgdvegkdvvivDDiisTggTlvkaaelLkekGAkkvivaathgvfsgdAlerla 259
                + +   t+l  ++  ++v+++D +++Tgg+ ++a+++L e+GA +  ++ +  +  +d l+ ++
  MMETSP1137-20121227|224_1 148 TPQLMYTKLPSQLSHRHVLLLDPMLATGGSCIAAIKVLIEQGAAEDRIIFISVLSCNDGLNAVH 211
                44566778888999*****************************875555544444555555555 PP

>> TIGR01090  apt: adenine phosphoribosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0   2.8e-06    0.0039     109     154 ..     162     207 ..     151     221 .. 0.78

  Alignments for each domain:
  == domain 1    score: 15.2 bits;  conditional E-value: 2.8e-06
  TIGR01090 109 gkrvlivDDllAtgGtveAaleLikklgaevveaaflielkklkgr 154
                +++vl++D +lAtgG+  Aa++++ + ga    + f+  l+  +g 
  MMETSP1137-20121227|224_1 162 HRHVLLLDPMLATGGSCIAAIKVLIEQGAAEDRIIFISVLSCNDGL 207
                678*************999999888878877777777666665555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (249 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        82  (0.0199902); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.21u 0.14s 00:00:00.35 Elapsed: 00:00:00.35
# Mc/sec: 939.01
//
Query:       MMETSP1137-20121227|225_1  [L=121]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.1e-07   28.9   0.0    2.9e-07   28.5   0.0    1.2  1  TIGR02180 GRX_euk: glutaredoxin
    2.4e-06   25.5   0.0    2.7e-06   25.3   0.0    1.2  1  TIGR00365 TIGR00365: monothiol glutaredoxin, Grx4 family
    8.4e-05   20.6   0.0    0.00012   20.2   0.0    1.3  1  TIGR02181 GRX_bact: glutaredoxin 3
     0.0014   16.4   0.0      0.002   15.9   0.0    1.3  1  TIGR02190 GlrX-dom: glutaredoxin-family domain
  ------ inclusion threshold ------
      0.015   13.1   0.0      0.019   12.8   0.0    1.2  1  TIGR02189 GlrX-like_plant: glutaredoxin-like family


Domain annotation for each model (and alignments):
>> TIGR02180  GRX_euk: glutaredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.5   0.0   3.5e-10   2.9e-07      14      79 ..      48     110 ..      44     115 .. 0.84

  Alignments for each domain:
  == domain 1    score: 28.5 bits;  conditional E-value: 3.5e-10
  TIGR02180  14 kakelLkklkvkkalevveldkl.engselqdyLkeltgqrtVPrifingkfiGGsddlkklekkgk 79 
                +++ +L+ lkv     ++e+d    ++ e++++L  +++ rt P++f+ +kf+G+   l++l + g+
  MMETSP1137-20121227|225_1  48 QVQTMLAGLKVP----FIEVDGAaPDMREVRSALWAVSESRTYPQVFVDNKFVGDMGMLQELVDAGQ 110
                566666666555....89999775899*****************************99999988776 PP

>> TIGR00365  TIGR00365: monothiol glutaredoxin, Grx4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.3   0.0   3.3e-09   2.7e-06      31      95 ..      47     113 ..      20     117 .. 0.82

  Alignments for each domain:
  == domain 1    score: 25.3 bits;  conditional E-value: 3.3e-09
  TIGR00365  31 akavqilkalgvefatvnvle..deeireelkeysnWPtiPqlyvkgelvGGcdivlelyesgelkk 95 
                 ++ ++l  l+v f +v+  +   +e+r+ l   s+  t+Pq++v++++vG   +++el+++g+  +
  MMETSP1137-20121227|225_1  47 RQVQTMLAGLKVPFIEVDGAApdMREVRSALWAVSESRTYPQVFVDNKFVGDMGMLQELVDAGQAGD 113
                56777889999999999965421579**********************************9998655 PP

>> TIGR02181  GRX_bact: glutaredoxin 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   0.0   1.4e-07   0.00012      35      75 ..      71     110 ..      39     115 .. 0.74

  Alignments for each domain:
  == domain 1    score: 20.2 bits;  conditional E-value: 1.4e-07
  TIGR02181  35 keareemierskgrrtvPQifigdvhvGGcddLlaleregk 75 
                +e r+ + + s + rt PQ+f++++ vG +  L++l ++g+
  MMETSP1137-20121227|225_1  71 REVRSALWAVS-ESRTYPQVFVDNKFVGDMGMLQELVDAGQ 110
                35667788888.59**************9999988887775 PP

>> TIGR02190  GlrX-dom: glutaredoxin-family domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   2.4e-06     0.002      47      75 ..      75     103 ..      48     106 .. 0.84

  Alignments for each domain:
  == domain 1    score: 15.9 bits;  conditional E-value: 2.4e-06
  TIGR02190  47 rslravtGattvPqvfinGkliGgsdele 75 
                 +l av+   t Pqvf++ k++G +  l+
  MMETSP1137-20121227|225_1  75 SALWAVSESRTYPQVFVDNKFVGDMGMLQ 103
                4689*******************987765 PP

>> TIGR02189  GlrX-like_plant: glutaredoxin-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   2.4e-05     0.019      26      76 ..      51     100 ..      30     115 .. 0.81

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 2.4e-05
  TIGR02189  26 rLllelGvnPavveldk.eaeakeiekallelgskeavPvvfvGGklvGgle 76 
                ++l +l      +e+d   ++++e+ +al +++ + + P vfv  k+vG + 
  MMETSP1137-20121227|225_1  51 TMLAGLK--VPFIEVDGaAPDMREVRSALWAVSESRTYPQVFVDNKFVGDMG 100
                5554444..3467888625799**************************9875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (121 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       101  (0.0246221); expected 82.0 (0.02)
Passed bias filter:                      101  (0.0246221); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.18u 0.17s 00:00:00.35 Elapsed: 00:00:00.33
# Mc/sec: 483.96
//
Query:       MMETSP1137-20121227|226_1  [L=430]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.9e-38  127.4   0.0    1.5e-19   68.1   0.0    2.2  2  TIGR02199 rfaE_dom_II: bifunctional protein RfaE, domain II
    4.3e-30  101.5   0.0    3.1e-14   50.8   0.0    2.6  2  TIGR00125 cyt_tran_rel: cytidyltransferase-related domain
      6e-27   92.1   0.0    2.3e-15   54.6   0.0    2.2  2  TIGR01518 g3p_cytidyltrns: glycerol-3-phosphate cytidylyltransferase
    4.2e-07   27.9   0.0     0.0099   13.7   0.0    2.3  2  TIGR01510 coaD_prev_kdtB: pantetheine-phosphate adenylyltransferase


Domain annotation for each model (and alignments):
>> TIGR02199  rfaE_dom_II: bifunctional protein RfaE, domain II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.1   0.0   1.4e-22   1.5e-19      15     142 ..      71     201 ..      60     203 .. 0.88
   2 !   57.2   0.0   3.3e-19   3.4e-16       9     104 ..     259     355 ..     256     397 .. 0.85

  Alignments for each domain:
  == domain 1    score: 68.1 bits;  conditional E-value: 1.4e-22
  TIGR02199  15 ftnGcfDllhaGhvkyLekarklgdlLvvglnsDasvkrlkgekrPinseedraevLaaLeavDlvv.....vfeedtpeeLikelkPdvlvkGgDykleelvgaelvesyGGevvllefeegksttaiieki 142
                  +G fD++h+Gh++  ++ r++g +Lvvg+n+D+s+ r kg+  P++s ++r+++++a + vD vv     + ++d  + +i++ + d  v G D  l +  +        G+ ++++ +eg stt+i+ ++
  MMETSP1137-20121227|226_1  71 WMDGAFDMMHYGHANAFRQGRQVGSCLVVGVNDDESITRCKGP--PLMSDHERLAMVSACKWVDEVVpevpyIMSDDYLKFVIQKYQIDYVVHGDDPCLVDGRDVYESAVRAGKYRTIPRTEGVSTTEIVGRM 201
                468***************************************9..*********************866666789999999***************7765444444444568******************997 PP

  == domain 2    score: 57.2 bits;  conditional E-value: 3.3e-19
  TIGR02199   9 kgkkvvftnGcfDllhaGhvkyLekarklgdlLvvglnsDasvkrlkgekrPinseedra.evLaaLeavDlvvvfeedtpeeLikelkPdvlvkGg 104
                +gkk+v  +G +D++haGhv +L++a +lgd L+vg+ +Da v+r +g++ Pi++ ++r+ +vL+   + D+v+    +   e+i++l+ +v   G+
  MMETSP1137-20121227|226_1 259 AGKKIVYVDGGWDMFHAGHVAFLREAAALGDYLLVGVHNDAVVNRHRGSNFPIMNLNERVlSVLSCRFCNDVVIDPPWHLTREMIAALNISVVAHGT 355
                689******************************************************9973688888888988877777778888888777777775 PP

>> TIGR00125  cyt_tran_rel: cytidyltransferase-related domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.8   0.0     3e-17   3.1e-14       1      65 []      69     134 ..      69     134 .. 0.97
   2 !   48.3   0.0   1.8e-16   1.9e-13       1      60 [.     263     325 ..     263     330 .. 0.95

  Alignments for each domain:
  == domain 1    score: 50.8 bits;  conditional E-value: 3e-17
  TIGR00125   1 ivvfvGtFdplHlGHlklleeakelfdelivgvgsdefvnpekg.pvtsaeerlemlkalkyvdev 65 
                +++++G Fd+ H+GH ++ ++ ++ +  l+vgv+ de++ + kg p++s +erl+m+ a+k+vdev
  MMETSP1137-20121227|226_1  69 RIWMDGAFDMMHYGHANAFRQGRQVGSCLVVGVNDDESITRCKGpPLMSDHERLAMVSACKWVDEV 134
                57899***********************************************************96 PP

  == domain 2    score: 48.3 bits;  conditional E-value: 1.8e-16
  TIGR00125   1 ivvfvGtFdplHlGHlklleeakelfdelivgvgsdefvnpekg...pvtsaeerlemlkalk 60 
                iv+++G  d++H GH+ +l+ea+ l+d+l+vgv++d  vn+++g   p++++ er+  + +++
  MMETSP1137-20121227|226_1 263 IVYVDGGWDMFHAGHVAFLREAAALGDYLLVGVHNDAVVNRHRGsnfPIMNLNERVLSVLSCR 325
                79***********************************9999999************9998886 PP

>> TIGR01518  g3p_cytidyltrns: glycerol-3-phosphate cytidylyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.6   0.0   2.3e-18   2.3e-15       3     122 ..      72     198 ..      70     201 .. 0.85
   2 !   35.2   0.0   2.3e-12   2.4e-09       2      91 ..     265     356 ..     264     369 .. 0.86

  Alignments for each domain:
  == domain 1    score: 54.6 bits;  conditional E-value: 2.3e-18
  TIGR01518   3 vygtfdllheghinllkkakqlgdklivalstdefnlekkkkayqsyekrklvleairyvdlvipeksw....eqkksdiaefdidvlvmgdd...wkgkfdflkeevt.lkvlylprtkevsttkik 122
                + g+fd++h+gh n +++ +q g+ l+v++  de   + k    +s ++r  ++ a ++vd+v+pe  +    +  k  i++++id +v gdd    +g  d  ++ v   k   +prt++vstt+i 
  MMETSP1137-20121227|226_1  72 MDGAFDMMHYGHANAFRQGRQVGSCLVVGVNDDESITRCKGPPLMSDHERLAMVSACKWVDEVVPEVPYimsdDYLKFVIQKYQIDYVVHGDDpclVDG-RDVYESAVRaGKYRTIPRTEGVSTTEIV 198
                579*******************************999999999999999*****************866332144566799************553345.577777776479999**********995 PP

  == domain 2    score: 35.2 bits;  conditional E-value: 2.3e-12
  TIGR01518   2 lvygtfdllheghinllkkakqlgdklivalstdefnlekkkkay..qsyekrklvleairyvdlvipeksweqkksdiaefdidvlvmgdd 91 
                 v g +d++h gh+ +l++a  lgd+l+v++  d+   +++   +  ++ ++r l + + r+ + v+ +  w+  ++ ia  +i v++ g  
  MMETSP1137-20121227|226_1 265 YVDGGWDMFHAGHVAFLREAAALGDYLLVGVHNDAVVNRHRGSNFpiMNLNERVLSVLSCRFCNDVVIDPPWHLTREMIAALNISVVAHGTK 356
                57899******************************9877777777225666777767799**************************999865 PP

>> TIGR01510  coaD_prev_kdtB: pantetheine-phosphate adenylyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   0.0   9.6e-06    0.0099       5      86 ..      73     162 ..      70     163 .. 0.81
   2 !   11.8   0.0   3.8e-05     0.039       5      91 ..     267     359 ..     263     411 .. 0.77

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 9.6e-06
  TIGR01510   5 pGsFdPvtlGHldiikralklfdevivavainps....Kk.slfsleervelleeat..kel.anvevkvfenlvvdlakelgakvivrG 86 
                 G+Fd +++GH + +++++++   ++v+v  ++s    K  +l+s +er+++++ +   +e+ ++v  ++++  +  ++++ ++  +v G
  MMETSP1137-20121227|226_1  73 DGAFDMMHYGHANAFRQGRQVGSCLVVGVNDDESitrcKGpPLMSDHERLAMVSACKwvDEVvPEVPYIMSDDYLKFVIQKYQIDYVVHG 162
                59***************************9877522223236899******997653335555999999999988888899999988887 PP

  == domain 2    score: 11.8 bits;  conditional E-value: 3.8e-05
  TIGR01510   5 pGsFdPvtlGHldiikralklfdevivava....inpsKkslfsleervelleeat..kelanvevkvfenlvvdlakelgakvivrGlRaat 91 
                 G +d ++ GH+  ++ a++l d ++v+v     +n ++ s f   +  e + +++  ++ ++v ++   +l+ +++  l+++v+  G ++ +
  MMETSP1137-20121227|226_1 267 DGGWDMFHAGHVAFLREAAALGDYLLVGVHndavVNRHRGSNFPIMNLNERVLSVLscRFCNDVVIDPPWHLTREMIAALNISVVAHGTKSDA 359
                5899************************96222256666666655555555555543244588999988889999999999988888877655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (430 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       100  (0.0243784); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.31u 0.13s 00:00:00.44 Elapsed: 00:00:00.39
# Mc/sec: 1455.26
//
Query:       MMETSP1137-20121227|227_1  [L=511]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.18    8.8   7.7       0.34    7.9   5.3    1.7  1  TIGR00599 rad18: DNA repair protein rad18
       0.77    6.7   7.7       0.31    8.0   3.4    1.7  1  TIGR00601 rad23: UV excision repair protein Rad23


Domain annotation for each model (and alignments):
>> TIGR00599  rad18: DNA repair protein rad18
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   5.3   0.00017      0.34      38      69 ..      75     110 ..      71     292 .. 0.87

  Alignments for each domain:
  == domain 1    score: 7.9 bits;  conditional E-value: 0.00017
  TIGR00599  38 aPvltsCsHtFCslCiRrcLseep....kCPlCrae 69 
                +P   sC+H FC+ C+++    ++     CPlCr  
  MMETSP1137-20121227|227_1  75 TPAYLSCGHVFCAKCVKTLTTRQAphpaICPLCRKA 110
                57888************988766322236****975 PP

>> TIGR00601  rad23: UV excision repair protein Rad23
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   3.4   0.00015      0.31     104     210 ..     231     347 ..     204     364 .. 0.58

  Alignments for each domain:
  == domain 1    score: 8.0 bits;  conditional E-value: 0.00015
  TIGR00601 104 asvaekksaaPasaveeessaeeeatatalesedt.saesegdsdre...........tlvvGsereetveeimemGyereeverAlRAafnnPdRAveYLltGiPedleaaep.....aaaeq 210
                    + + +aP ++++   s+ e++t   +++ ++ +++++++s+ +                   e  v+ei +mG+  ++  +AlR +    d Av  Ll G  e++ ++ p       + +
  MMETSP1137-20121227|227_1 231 RRRRQREMDAPRGTRTLTPSSAETPTHVQQAQGSGpAVSASASSQPSvlqllptdppdR----LLVECLVQEIAQMGFSEQHALAALRQS--ESDXAVGALLDGAIEMAPSN-PlapplQNHAN 347
                33444555667666655544444444444333333033333333333554333322222....235889*******************98..789*********99988765.42334422223 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (511 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        72  (0.0175524); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.36u 0.16s 00:00:00.52 Elapsed: 00:00:00.47
# Mc/sec: 1435.03
//
Query:       MMETSP1137-20121227|228_1  [L=378]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (378 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        78  (0.0190151); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.18s 00:00:00.46 Elapsed: 00:00:00.60
# Mc/sec: 831.53
//
Query:       MMETSP1137-20121227|229_1  [L=308]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00081   16.6   0.0     0.0012   16.1   0.0    1.2  1  TIGR01177 TIGR01177: TIGR01177 family protein
  ------ inclusion threshold ------
      0.013   12.4   0.0      0.024   11.5   0.0    1.3  1  TIGR00342 TIGR00342: thiamine biosynthesis/tRNA modification protein ThiI


Domain annotation for each model (and alignments):
>> TIGR01177  TIGR01177: TIGR01177 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0   5.8e-07    0.0012      76     158 ..     203     287 ..     159     290 .. 0.84

  Alignments for each domain:
  == domain 1    score: 16.1 bits;  conditional E-value: 5.8e-07
  TIGR01177  76 leasdldeksfavrvrklkkksvdkarlekkigailkkkg..lkvslskpdivvrvvitedkfllgrvleerdkeqFeerkpdrR 158
                le     + s+a++ r+++++ +dk+++   ++a +   +  ++v+l +pd vv v +++ ++ l++++  ++ ++++ r + ++
  MMETSP1137-20121227|229_1 203 LEELRGTKVSYAIEWRRRCNTGIDKKEVIDGVAAAVGLLApeARVDLGQPDAVVLVDVMKSICSLSVLMRWQQMHHYNLRAASEK 287
                3333333469******************999999988766679***********************************9988765 PP

>> TIGR00342  TIGR00342: thiamine biosynthesis/tRNA modification protein ThiI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   1.2e-05     0.024      62     151 ..     171     262 ..     155     267 .. 0.79

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 1.2e-05
  TIGR00342  62 llkkipGis.sfsllvkaeleldeik.klkkalkelrkekktFkvevkRrdkdFalnsvevnkkvgekl.vekielkvdlenPditvhiEile 151
                 +++ p ++ +  +  +++ +++ i   +  +l+elr  k ++++e +Rr +   ++ +ev   v++++ +   e++vdl +Pd +v +++++
  MMETSP1137-20121227|229_1 171 GFSQAPHVVrMLPIHATCPAHREHIMqAAAPLLEELRGTKVSYAIEWRRRCNTG-IDKKEVIDGVAAAVgLLAPEARVDLGQPDAVVLVDVMK 262
                555555544134566788999999986777899****************98765.48999999999888345567**************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (308 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        97  (0.023647); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.27u 0.16s 00:00:00.43 Elapsed: 00:00:00.30
# Mc/sec: 1355.09
//
Query:       MMETSP1137-20121227|230_1  [L=529]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0043   15.2   0.1     0.0076   14.4   0.1    1.3  1  TIGR00269 TIGR00269: TIGR00269 family protein


Domain annotation for each model (and alignments):
>> TIGR00269  TIGR00269: TIGR00269 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.1   1.9e-06    0.0076      53      97 ..      72     118 ..      59     123 .. 0.71

  Alignments for each domain:
  == domain 1    score: 14.4 bits;  conditional E-value: 1.9e-06
  TIGR00269  53 kpgvkfsvlrsfekkiillkelse..keelrrCerCGePasgkiCka 97 
                 pg+  s +r   ++i   ++l e  +e+ +rC+rCG+P  g++C+a
  MMETSP1137-20121227|230_1  72 LPGRSVSSVRNRWQRIEKGRKLREagHESKNRCQRCGQPKRGHVCHA 118
                5666665555443335555666652246789**************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (529 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       102  (0.0248659); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.16s 00:00:00.51 Elapsed: 00:00:00.61
# Mc/sec: 1144.63
//
Query:       MMETSP1137-20121227|231_1  [L=534]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (534 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       154  (0.0375427); expected 82.0 (0.02)
Passed bias filter:                      131  (0.0319356); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.18s 00:00:00.57 Elapsed: 00:00:00.48
# Mc/sec: 1468.38
//
Query:       MMETSP1137-20121227|232_1  [L=61]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        39  (0.00950756); expected 82.0 (0.02)
Passed bias filter:                       38  (0.00926377); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.15s 00:00:00.28 Elapsed: 00:00:00.44
# Mc/sec: 182.98
//
Query:       MMETSP1137-20121227|233_1  [L=752]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (752 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        73  (0.0177962); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.19s 00:00:00.64 Elapsed: 00:00:00.56
# Mc/sec: 1741.33
//
Query:       MMETSP1137-20121227|234_1  [L=692]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      3e-69  232.3   0.0    3.5e-68  228.8   0.0    2.0  1  TIGR00591 phr2: deoxyribodipyrimidine photolyase
    0.00031   17.6   1.0     0.0019   15.0   0.2    2.0  2  TIGR03556 photolyase_8HDF: deoxyribodipyrimidine photo-lyase, 8-HDF type


Domain annotation for each model (and alignments):
>> TIGR00591  phr2: deoxyribodipyrimidine photolyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  228.8   0.0   1.7e-71   3.5e-68       6     436 ..      77     529 ..      74     538 .. 0.82

  Alignments for each domain:
  == domain 1    score: 228.8 bits;  conditional E-value: 1.7e-71
  TIGR00591   6 krirllskte....kvkdsseg..vvywmsrdqrvqdnwaliyaqelalkeklPlavvfclvdkfldatirhykfllkGlrevakelkeldipfhlllg...sakevlpkfvee.kkaaavvtDfsplriikqwvee..vakalpkdvplvqvdahnvvPvwaasdkleysartirgkikkllpefltelpkvelkak.sslktaeavdweealaslkvdrevkevelakpGtkaglevlee...........fiskrLklfe...ekrndPnk.dalsnlsPylhfGqlsaqrvalevkrarsaesesvdefleelivrreLadnfcfyn.esydslkglyeWakktLkdhakDkreylYsleqlekaktaDklWnaaqlelveeGkmhgflrmyWakkiLeWtksPeealeiaiyLndkyelDGrDPngyvgvmWsicGvhDrgw.aerevfGkvrymn 436
                +rir+l ++     +    s+g  v++w +   r   n al  a  la +++lPl v+ ++  + ++at+r+ +f l+ l  + +el+ + +p+ +  +    a +   ++ +   +aaa+v +  p++  + w +   +a a p+  pl++vda +vvP++ +      sar++r          l ++p +    + s+  + ++ d+ +++       + +++   +   +a l+v++              +  ++  +   + rn+ +     s+ s ylh+G ls+  +a +++      ++ +++f +el++ reLa  fc+y  ++  sl++l++Wa++tL+ ha+D+r +l  ++ le+++  D++W+aaq+ lv++G +h+ lrm W+k +L Wt+sP+ al+++++Ln +++lDG+DP +y gv+W++ G+ D +   er+v G +r   
  MMETSP1137-20121227|234_1  77 QRIRCLASSSsegtQYDVPSQGefVLWWAQTGLRTSLNPALHTARLLARHLNLPLLVIGTVRLDREHATARRCAFELEALLSLCDELRGQRVPMLMYADvdgGAGQSAAALTHFaSRAAAIVVEEMPVEPYRSWTSRlvAATASPQRPPLLAVDAACVVPMQSVPRA-YDSARAFRAATAATRAARLAAVPAMRAADAaSAQVHLPPLDMAALVGPTAGRLTTAPMLSGQQLCEAVLSVVKRmaadtavppvlVGEANMRAADarwRARNNAVDsGGTSRCSAYLHYGLLSPFALATDAS------AARASKFADELLIWRELAYSFCYYRyDQLGSLAALPNWAQRTLSLHANDARPKLVDMHALERGESGDSVWDAAQQLLVHTGELHNNLRMTWGKSLLFWTRSPQAALSTTLHLNHRFALDGCDPCSYGGVLWCF-GLFDGPKgPERPVCGSLRTRA 529
                78888865331111222234555589999********************************99******************************9987653234444444444433599****************99832455678999**************98655.779********************876665536666777888888777666666666666656666666666655555666666532233344333112678998874789****************999998......567789******************988899*******************************************************************************************************.***987536******999765 PP

>> TIGR03556  photolyase_8HDF: deoxyribodipyrimidine photo-lyase, 8-HDF type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.0     0.017        36       2     113 ..     100     217 ..      99     223 .. 0.76
   2 !   15.0   0.2   9.4e-07    0.0019     230     352 ..     345     465 ..     332     473 .. 0.74

  Alignments for each domain:
  == domain 1    score: 0.9 bits;  conditional E-value: 0.017
  TIGR03556   2 lilfwhrrdlrlsdnlglaaarqksakv.vglfcldekilkaddiaparvayllgclqelqerykrlgsellilr......gdpvqllpklakaleakavywnldvepysrkrdravaa 113
                 +l+w +  lr s n +l +ar  + ++ + l+ +    l+++  ++ r a+ l +l +l ++ +     +l+        g+   +l ++a+   a  v+ ++ vepy     r vaa
  MMETSP1137-20121227|234_1 100 FVLWWAQTGLRTSLNPALHTARLLARHLnLPLLVIGTVRLDREHATARRCAFELEALLSLCDELRGQRVPMLMYAdvdggaGQSAAALTHFASRA-AAIVVEEMPVEPYRSWTSRLVAA 217
                5899******************99888757899999999*********************99998777777765322222234455566666553.44466678899998777777766 PP

  == domain 2    score: 15.0 bits;  conditional E-value: 9.4e-07
  TIGR03556 230 rnfpaldgtsqlsaalkfgvigirtvwqatlealeasrseearesirtwqqelawref.yqhalysfpeladgpyrekfke..fpwenneah.....fqawcegktgypivdaamrqlnetgwmhnrcrmi 352
                 n     gts+ sa l++g +++  + + +++a ++  ++e           l wre+ y ++ y++ +l + +   ++++  +  + n+a+     ++a  +g++g  + daa + l +tg +hn  rm 
  MMETSP1137-20121227|234_1 345 NNAVDSGGTSRCSAYLHYGLLSPFALATDASAARASKFADEL----------LIWRELaYSFCYYRYDQLGSLAALPNWAQrtLSLHANDARpklvdMHALERGESGDSVWDAAQQLLVHTGELHNNLRMT 465
                445556799999999999999998887777766655555543..........56666548888888888888887777765224455555532223378999***************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (692 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        69  (0.0168211); expected 82.0 (0.02)
Passed bias filter:                       40  (0.00975134); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.15s 00:00:00.63 Elapsed: 00:00:00.54
# Mc/sec: 1691.42
//
Query:       MMETSP1137-20121227|236_1  [L=594]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (594 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       279  (0.0680156); expected 82.0 (0.02)
Passed bias filter:                      126  (0.0307167); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.15s 00:00:00.59 Elapsed: 00:00:00.63
# Mc/sec: 1244.47
//
Query:       MMETSP1137-20121227|237_1  [L=295]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.6e-26   88.7   0.0    8.4e-26   88.4   0.0    1.1  1  TIGR03303 OM_YaeT: outer membrane protein assembly complex, YaeT protein


Domain annotation for each model (and alignments):
>> TIGR03303  OM_YaeT: outer membrane protein assembly complex, YaeT protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.4   0.0     2e-29   8.4e-26     386     637 ..      43     292 ..      36     295 .] 0.88

  Alignments for each domain:
  == domain 1    score: 88.4 bits;  conditional E-value: 2e-29
  TIGR03303 386 vdvnvkVkE.kptGslsfGvGygsssgllfnasiserNflGtGkslslslnkskks.qslslsltdpyftddgvslgfsifysefkaskksfsdYksksyGlslnlgypisenlr..vslglgyeqnkiklseekdesasellkeqkgkytdsslslslsydtldsayfPtkGvllrlsqefagpggdlkyyklevkseyyiplskeddlvlslkgelgygngyggke..lpfyerfyaggigsvRGFesnsigPrdk 637
                 d++v+V E k  +  s Gv  +s    ++ as++ rN+lG  +  ++ ++++ ++ + ++l++++p+++++++ l  ++  ++   s ++ s++++ks G++l+  +   e+ +   +++++++  ++   +   ++as  + eq+g + +s++s+++++++ld+ ++Pt+G+llrls+  +g   d+ + k +v++++ +pl+ + +l l+l+++ g+   +g +   + + +rf++gg +s+ GF++n++gPr+ 
  MMETSP1137-20121227|237_1  43 ADIVVTVSEkKRLSHASTGVHTSSG-EGSMDASVTVRNLLGHAEXYNMVMEAGHQRsNAFKLQISKPRWLGRDIVLAADFGKQT--VSRQKHSSFDEKSRGGKLSCTMGNAEDPAgcHDFSYELSLREVC--KLPMRTASWSILEQRGLSVKSAISHTYTRSSLDNPVMPTSGSLLRLSIPAFG---DALFHKQQVEVQRHVPLLPQWQLALHLSARGGLLMPLGTTPrpVTVVDRFFLGGPNSLWGFRTNGVGPREM 292
                69*******4455677777766666.6689**********************98874779*******************99999..88888999********9998888777765116677777777776..99999999999**********************************9987665...*******************999999************9976337799**********************85 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (295 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        51  (0.012433); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.25u 0.17s 00:00:00.42 Elapsed: 00:00:00.51
# Mc/sec: 763.47
//
Query:       MMETSP1137-20121227|238_1  [L=392]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.018   12.7   3.6       0.06   11.0   2.5    1.8  1  TIGR03008 pepcterm_CAAX: CAAX prenyl protease-related protein


Domain annotation for each model (and alignments):
>> TIGR03008  pepcterm_CAAX: CAAX prenyl protease-related protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   2.5   1.5e-05      0.06     112     205 ..     163     275 ..     154     292 .. 0.73

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 1.5e-05
  TIGR03008 112 rivliafRllGatlvvPvlEElFwRsfll....rllq..kkdfesvpvgrlaw...ksflavtil.........FgleHklivagllAGl.ayallllrtgsivacvlaHavt 205
                + v+ a+  lG  l+v  +EE  +R+ l     +++   + d++s + g la+   ++++a++ l         F+ e ++++a  l G+  y ++++ tg ++ +v+aHa  
  MMETSP1137-20121227|238_1 163 QPVVTAIVSLGMCLLVGTVEETVFRGQLFpifnQWISafDVDLTSFESGLLAAllsSAAFAAGHLnlrgglsqiFTEEAQVLFALQLFGAmLYCAMYVVTGDLTVPVMAHAAY 275
                5677788899****************9862222566422345556665554432214555555557888889999999999999998886269*****************974 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (392 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       118  (0.0287665); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.30u 0.16s 00:00:00.46 Elapsed: 00:00:00.51
# Mc/sec: 1014.50
//
Query:       MMETSP1137-20121227|239_1  [L=278]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.1e-16   57.1   0.5    4.9e-16   56.9   0.3    1.1  1  TIGR02349 DnaJ_bact: chaperone protein DnaJ
    3.4e-09   33.4   0.0    4.4e-09   33.1   0.0    1.0  1  TIGR03835 termin_org_DnaJ: terminal organelle assembly protein TopJ


Domain annotation for each model (and alignments):
>> TIGR02349  DnaJ_bact: chaperone protein DnaJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.9   0.3   2.4e-19   4.9e-16       3      76 ..     119     192 ..     117     253 .. 0.75

  Alignments for each domain:
  == domain 1    score: 56.9 bits;  conditional E-value: 2.4e-19
  TIGR02349   3 YeiLgvskdAseeeikkAYrklakkyHPDrnkgekeaeekfkeineAye.vLsdeekraqYDqfghagleggagg 76 
                Y++Lg++++As+++ik AYr+lak++HPD n   +++eekfk+i+ Ay   L ++++r++    g++g  gg  +
  MMETSP1137-20121227|239_1 119 YSTLGLNRSASTQQIKDAYRDLAKRHHPDLNV-AEASEEKFKKITAAYTaALLESSRREKDAAEGKSGHAGGIPR 192
                99******************************.889************735888888887777787777776544 PP

>> TIGR03835  termin_org_DnaJ: terminal organelle assembly protein TopJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.1   0.0   2.1e-12   4.4e-09       5      69 ..     119     187 ..     116     195 .. 0.82

  Alignments for each domain:
  == domain 1    score: 33.1 bits;  conditional E-value: 2.1e-12
  TIGR03835   5 yevLgidrDadeqeikkafrkLakkyhPDrnkaadaakifaeineandv.L...snPkkraryDkyGhD 69 
                y  Lg++r a  q+ik a+r Lak++hPD n a  +++ f+ i  a+   L   s  +k a   k Gh 
  MMETSP1137-20121227|239_1 119 YSTLGLNRSASTQQIKDAYRDLAKRHHPDLNVAEASEEKFKKITAAYTAaLlesSRREKDAAEGKSGHA 187
                899******************************99***********97423233445555566666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (278 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       103  (0.0251097); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.24u 0.19s 00:00:00.43 Elapsed: 00:00:00.56
# Mc/sec: 643.74
//
Query:       MMETSP1137-20121227|240_1  [L=426]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.4e-31  105.8   0.5    1.9e-30  104.2   0.3    1.7  1  TIGR02825 B4_12hDH: leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase
    2.6e-15   54.1   0.1    3.6e-15   53.6   0.1    1.2  1  TIGR02824 quinone_pig3: putative NAD(P)H quinone oxidoreductase, PIG3 family
    4.1e-14   50.0   1.0    8.4e-14   49.0   0.7    1.5  1  TIGR02823 oxido_YhdH: putative quinone oxidoreductase, YhdH/YhfP family
    5.8e-06   23.1   1.1    4.7e-05   20.1   0.6    2.0  2  TIGR01751 crot-CoA-red: crotonyl-CoA reductase
    1.8e-05   22.1   0.1    4.1e-05   21.0   0.0    1.5  2  TIGR02817 adh_fam_1: zinc-binding alcohol dehydrogenase family protein
     0.0015   15.5   0.0     0.0023   14.9   0.0    1.4  1  TIGR02818 adh_III_F_hyde: S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase
     0.0026   14.7   0.2     0.0047   13.9   0.1    1.3  1  TIGR03201 dearomat_had: 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase


Domain annotation for each model (and alignments):
>> TIGR02825  B4_12hDH: leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  104.2   0.3   3.3e-33   1.9e-30     116     250 ..     216     352 ..      98     380 .. 0.76

  Alignments for each domain:
  == domain 1    score: 104.2 bits;  conditional E-value: 3.3e-33
  TIGR02825 116 lalgtvgm.pgltayfglleicgv.kggetvlvnaaagavgsvvgqiaklkgckvvgaagsdekvayl.kklgfdvafnyktv.ksleetlkkaspdgydcyfdnvggefsntvirqmkkfgriaicgaistynrtgpl 250
                 +lg +g+  glta++g++ ++   + ge v+v+aaagavgsv  q+ak  g+kv+g ag ++k ++l ++l +d a +yk+  ++l e l   +pdg d ++dnvgg   ++v+ +++   r+ icga+s+y   g+l
  MMETSP1137-20121227|240_1 216 HSLGLLGLtTGLTAWMGIFAVARKpRRGEVVVVSAAAGAVGSVAAQLAKRTGAKVIGIAGGEKKCDFLlNQLKLDGAVDYKSTeRTLGEQLDALAPDGVDFFYDNVGGATLDAVLLRLRPKARVVICGAVSQYS--GKL 352
                46788886369*********9864389***************************************95389*********965268***********************************************6..344 PP

>> TIGR02824  quinone_pig3: putative NAD(P)H quinone oxidoreductase, PIG3 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.6   0.1   6.1e-18   3.6e-15      67     247 ..     172     352 ..     110     358 .. 0.73

  Alignments for each domain:
  == domain 1    score: 53.6 bits;  conditional E-value: 6.1e-18
  TIGR02824  67 GevvavgeevskfkvGdrvcaLvagGgyaeyvvveakqvlpvpeglslveaAalpEtffTvwsnlfelakl.kagetvLihggasGiGttaiqlakalgakvlvtagsdekle.aaekLGadvainyreed..FvevvkeetegkGvdvilDivggsyleknlkalakdGrlvliallggakael 247
                G+v++ g+   + k G rv++++ +   +     + ++v+p+ +  +     +l+ t +T+w  +f +a+  ++ge v++ ++a+ +G++a qlak++gakv+  ag ++k++   ++L  d a++y++++    e++    +  Gvd   D vgg+ l+  l  l  ++r+v+ + +   + +l
  MMETSP1137-20121227|240_1 172 GVVLKDGS--GRRKPGTRVLGMLRAQTLSRVKSSQVSRVMPFVSPKHSLGLLGLT-TGLTAWMGIFAVARKpRRGEVVVVSAAAGAVGSVAAQLAKRTGAKVIGIAGGEKKCDfLLNQLKLDGAVDYKSTErtLGEQLD-ALAPDGVDFFYDNVGGATLDAVLLRLRPKARVVICGAVSQYSGKL 352
                66666664..344689999999998888887777777777776666555555554.789*********976378***************************************88899*********987621344444.45668****************************999887666555 PP

>> TIGR02823  oxido_YhdH: putative quinone oxidoreductase, YhdH/YhfP family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.0   0.7   1.4e-16   8.4e-14     101     246 ..     198     347 ..     185     353 .. 0.83

  Alignments for each domain:
  == domain 1    score: 49.0 bits;  conditional E-value: 1.4e-16
  TIGR02823 101 arvkadwvvplPeglslkeam.ilG.tAGfTAaLsvealekagltpeegev.lVtGAtGgVgslavalLsklGyevvavtgkkeeeeyl.kel...GakevisreeleeekkkplekerwagavDtvGgkvlanvlkqlkyggavaacGlaag 246
                 rvk+++v ++   +s k++   lG t G+TA + ++a+ ++   p++gev +V+ A+G+Vgs+a +l ++ G +v+ + g +++ ++l ++l   Ga +  s e+   e+  +l+ +  + + D+vGg++l++vl +l+ ++ v +cG ++ 
  MMETSP1137-20121227|240_1 198 SRVKSSQVSRVMPFVSPKHSLgLLGlTTGLTAWMGIFAVARK---PRRGEVvVVSAAAGAVGSVAAQLAKRTGAKVIGIAGGEKKCDFLlNQLkldGAVDYKSTERTLGEQLDALAPDGVDFFYDNVGGATLDAVLLRLRPKARVVICGAVSQ 347
                5777777777777777777752566689********999887...7777761678899**********************999998765256644578888777777778999************************************9875 PP

>> TIGR01751  crot-CoA-red: crotonyl-CoA reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.6     8e-08   4.7e-05     184     231 ..     237     284 ..     195     312 .. 0.78
   2 ?    1.5   0.0     0.035        21     260     317 ..     294     350 ..     284     354 .. 0.79

  Alignments for each domain:
  == domain 1    score: 20.1 bits;  conditional E-value: 8e-08
  TIGR01751 184 paelkpGdavLiWGaaGGLGsyaiqlaraaGgipvavvssedkaeiar 231
                + + ++G++v++  aaG +Gs+a qla+ +G+  +++   e+k ++ +
  MMETSP1137-20121227|240_1 237 ARKPRRGEVVVVSAAAGAVGSVAAQLAKRTGAKVIGIAGGEKKCDFLL 284
                456689***********************************9998764 PP

  == domain 2    score: 1.5 bits;  conditional E-value: 0.035
  TIGR01751 260 ewtkevkrfgkairevlGeedvkivlehsGratfpvsvyvvkrgGmvvicggttGynl 317
                ++  + + +g+++  +   + v+  ++ +G at+ + +   +    vvicg+ + y  
  MMETSP1137-20121227|240_1 294 DYKSTERTLGEQLDALAP-DGVDFFYDNVGGATLDAVLLRLRPKARVVICGAVSQYSG 350
                555556667766655544.778999999*********9999*9**********99975 PP

>> TIGR02817  adh_fam_1: zinc-binding alcohol dehydrogenase family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0       1.1   6.3e+02     282     306 ..     130     154 ..     126     158 .. 0.82
   2 !   21.0   0.0     7e-08   4.1e-05     127     242 ..     225     338 ..     215     349 .. 0.73

  Alignments for each domain:
  == domain 1    score: -2.6 bits;  conditional E-value: 1.1
  TIGR02817 282 eqhellnevaelvdeGkikttlaet 306
                e+ ell +v  l  +  i+ttl+++
  MMETSP1137-20121227|240_1 130 EKDELLVRVEMLSVDAFIRTTLDQE 154
                6778999999998899999999875 PP

  == domain 2    score: 21.0 bits;  conditional E-value: 7e-08
  TIGR02817 127 taitawellfdrlkieedvagekralliiGaaGGvgsiliqlarqlteltviatasraesqewv.kelGahavidh...skplkaqleklkleevsyvisltqtdqhleeivellaPqGr 242
                t +taw  +f      + ++ + +++++  aaG vgs++ qla++ t+++vi+ a      +++ ++l  +  +d+    + l +ql++l+ + v++    +   + l+++   l+P+ r
  MMETSP1137-20121227|240_1 225 TGLTAWMGIFAV----ARKPRRGEVVVVSAAAGAVGSVAAQLAKR-TGAKVIGIAGGEKKCDFLlNQLKLDGAVDYkstERTLGEQLDALAPDGVDFFYD-NVGGATLDAVLLRLRPKAR 338
                569999999963....35667889999999************986.899*****9988877775145655666655211678999999999999998654.4445556666666666665 PP

>> TIGR02818  adh_III_F_hyde: S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   3.9e-06    0.0023     160     266 ..     215     324 ..     128     337 .. 0.85

  Alignments for each domain:
  == domain 1    score: 14.9 bits;  conditional E-value: 3.9e-06
  TIGR02818 160 lekvcllg..cgvttgigavlntakveegatvavf.glggiglsviqgaklakasriiaidineakfel.akklgatdlvnpkdydkpiqeviveltdggvdysfecignv 266
                ++ + llg   g+t+ +g    + k ++g+ v v    g++g  + q ak ++a ++i+i   e+k ++  ++l     v+ k  ++ + e +  l+  gvd+ ++ +g  
  MMETSP1137-20121227|240_1 215 KHSLGLLGltTGLTAWMGIFAVARKPRRGEVVVVSaAAGAVGSVAAQLAKRTGA-KVIGIAGGEKKCDFlLNQLKLDGAVDYKSTERTLGEQLDALAPDGVDFFYDNVGGA 324
                445556553368888899888999999***999972579999999999999886.799*********972589999999****************************9976 PP

>> TIGR03201  dearomat_had: 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.1     8e-06    0.0047     165     205 ..     241     282 ..     228     305 .. 0.85

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 8e-06
  TIGR03201 165 kkgdlviviGv.GGvGgyavqvakalGaavvaidideeklem 205
                ++g++v+v  + G vG+ a q+ak  Ga v++i   e+k + 
  MMETSP1137-20121227|240_1 241 RRGEVVVVSAAaGAVGSVAAQLAKRTGAKVIGIAGGEKKCDF 282
                57888888776699*******************988888664 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (426 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       195  (0.0475378); expected 82.0 (0.02)
Passed bias filter:                      169  (0.0411994); expected 82.0 (0.02)
Passed Vit filter:                        22  (0.00536324); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.41u 0.19s 00:00:00.60 Elapsed: 00:00:00.61
# Mc/sec: 921.76
//
Query:       MMETSP1137-20121227|241_1  [L=419]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (419 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       217  (0.052901); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.16s 00:00:00.47 Elapsed: 00:00:00.35
# Mc/sec: 1580.10
//
Query:       MMETSP1137-20121227|242_1  [L=329]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (329 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       124  (0.0302292); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.18s 00:00:00.45 Elapsed: 00:00:00.51
# Mc/sec: 851.46
//
Query:       MMETSP1137-20121227|243_1  [L=489]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (489 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        94  (0.0229157); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.17s 00:00:00.50 Elapsed: 00:00:00.64
# Mc/sec: 1008.48
//
Query:       MMETSP1137-20121227|244_1  [L=345]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-50  170.1   1.4    1.4e-50  170.1   1.0    1.4  2  TIGR01830 3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase
    3.2e-48  162.3   1.4    4.1e-48  162.0   0.9    1.1  1  TIGR01829 AcAcCoA_reduct: acetoacetyl-CoA reductase
    4.2e-41  138.7   1.0    2.4e-40  136.3   0.7    1.9  1  TIGR01963 PHB_DH: 3-hydroxybutyrate dehydrogenase
    1.1e-33  114.4   3.8    1.5e-33  114.0   2.6    1.1  1  TIGR03206 benzo_BadH: 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase
    2.3e-32  110.2   0.5    6.4e-32  108.8   0.4    1.6  1  TIGR02415 23BDH: acetoin reductases
    1.7e-30  104.1   1.7    2.3e-30  103.7   1.2    1.1  1  TIGR01832 kduD: 2-deoxy-D-gluconate 3-dehydrogenase
    7.7e-28   95.3   3.8      1e-27   94.9   2.6    1.2  1  TIGR01831 fabG_rel: putative 3-oxoacyl-(acyl-carrier-protein) reductase
    5.1e-27   92.8   1.0    7.3e-27   92.3   0.7    1.2  1  TIGR03971 SDR_subfam_1: oxidoreductase, SDR family
    2.2e-19   67.1   2.1    2.6e-19   66.9   1.5    1.1  1  TIGR02632 RhaD_aldol-ADH: rhamnulose-1-phosphate aldolase/alcohol dehydrogenase
      2e-14   51.3   0.7    4.7e-14   50.1   0.5    1.5  1  TIGR03325 BphB_TodD: cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase
    1.3e-08   32.1   1.1    1.7e-07   28.4   0.7    2.3  2  TIGR02685 pter_reduc_Leis: pteridine reductase
  ------ inclusion threshold ------
       0.01   13.1   0.1      0.013   12.7   0.0    1.1  1  TIGR01500 sepiapter_red: sepiapterin reductase


Domain annotation for each model (and alignments):
>> TIGR01830  3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  170.1   1.0     4e-53   1.4e-50      15     224 ..       1     211 [.       1     215 [. 0.95
   2 ?   -3.3   0.1       3.6   1.2e+03     136     149 ..     248     261 ..     246     263 .. 0.82

  Alignments for each domain:
  == domain 1    score: 170.1 bits;  conditional E-value: 4e-53
  TIGR01830  15 akklakegakvviterskeekaeelaeelkeagvkaaavkldvsdeeevkelveeveeelgeidilvnnAGitrDklll..rmkeedwdevikvnLkgvfnvtkavlkkmikkrsGriinissvvgllGnagqanYaasKaGligltkslakElasrnitvnavaPGfietdmteklsekvkkkileqiplkrlgkpeevaaavafLasdea 224
                a++la++ga+ ++ +  +e+++++++++l+ +  + +++++dv+ + + +++v+++++++++idilv+ AGit  + l   ++  +++d+v++vnL+g+f +++avl+ m ++ +Gri+ni+s++g  Gnag   Y++sKaG+igltk + kE+a+ +it+na++P  ++t+m +++++ + k ++++ip+kr+g+ +e+aa+++f+as++a
  MMETSP1137-20121227|244_1   1 ATALADRGARXCLLDL-NEKALSRAVASLSLTPXNLMTIATDVTVDGNSERAVAAIVRRWSRIDILVQAAGITGATNLTtdKVDPSNFDKVLAVNLRGIFLMCRAVLQVMRERNYGRIVNIASIAGKEGNAGMLAYSTSKAGVIGLTKVIGKEFAETGITCNALSPAVVRTEMVAAMPDAQVKYMTDKIPMKRTGELSEIAAMICFMASQSA 211
                6789999999999977.66789999999**9******************************************8877663357778***************************************************************************************************************************987 PP

  == domain 2    score: -3.3 bits;  conditional E-value: 3.6
  TIGR01830 136 vvgllGnagqanYa 149
                +v  +Gn gq  Ya
  MMETSP1137-20121227|244_1 248 LVNDSGNEGQQSYA 261
                56778******997 PP

>> TIGR01829  AcAcCoA_reduct: acetoacetyl-CoA reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  162.0   0.9   1.2e-50   4.1e-48      34     227 ..      17     212 ..       1     221 [. 0.91

  Alignments for each domain:
  == domain 1    score: 162.0 bits;  conditional E-value: 1.2e-50
  TIGR01829  34 neerakewlqekevegfdvavvkadvssfeeakaavakveaelGpvdvlvnnaGitrda..vfkkmtkeqWeevidtnlnsvfnvtrpviegmlergfGriinissvnGlkGqfGqanysaakaGliGftkalaqegakkgvtvnviaPGyiatemvkavredvlkkivaqiPvkrlgkpeeiaaavaflaseeag 227
                ne++ ++   + +++  +++ + +dv+   ++++ava +     ++d+lv +aGit  +  +  k++  ++++v+++nl ++f + r v++ m+er++Gri+ni+s+ G+ G +G   ys++kaG+iG+tk + +e a++g+t n+++P  + temv+a+++  +k ++++iP+kr g+  eiaa++ f+as++a+
  MMETSP1137-20121227|244_1  17 NEKALSRAVASLSLTPXNLMTIATDVTVDGNSERAVAAIVRRWSRIDILVQAAGITGATnlTTDKVDPSNFDKVLAVNLRGIFLMCRAVLQVMRERNYGRIVNIASIAGKEGNAGMLAYSTSKAGVIGLTKVIGKEFAETGITCNALSPAVVRTEMVAAMPDAQVKYMTDKIPMKRTGELSEIAAMICFMASQSAA 212
                4455555556667777899999**********************************866225689********************************************************************************************************************************997 PP

>> TIGR01963  PHB_DH: 3-hydroxybutyrate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  136.3   0.7   6.9e-43   2.4e-40      18     240 ..       1     213 [.       1     221 [. 0.93

  Alignments for each domain:
  == domain 1    score: 136.3 bits;  conditional E-value: 6.9e-43
  TIGR01963  18 akelaaaGakvvvndleeeaaeaaakeleeaggevlalkadvtkeeeiadlieavaaefgsldiLvnnAGiqhvapi..eefptekfekiiavnltsafhtiraalpimkkqgwGriiniasvhglvasafKsaYvaaKHglvGltKvlAlEvAetgitanaicPgyvrtpLvekqiadqaktrgiseeqvvkevllkkqptkrfvtveevaelalflasdaaaq 240
                a++la  Ga+  + dl+e+a+++a ++l+ +  + +++++dvt   + ++ ++a++++++++diLv+ AGi   +++  ++ ++ +f+k++avnl + f + ra+l  m+++++Gri+nias+ g ++ a   aY ++K g++GltKv+ +E Aetgit+na+ P+ vrt +v++           +  qv  + + +k p kr  +  e+a+++ f+as++aa+
  MMETSP1137-20121227|244_1   1 ATALADRGARXCLLDLNEKALSRAVASLSLTPXNLMTIATDVTVDGNSERAVAAIVRRWSRIDILVQAAGITGATNLttDKVDPSNFDKVLAVNLRGIFLMCRAVLQVMRERNYGRIVNIASIAGKEGNAGMLAYSTSKAGVIGLTKVIGKEFAETGITCNALSPAVVRTEMVAAM----------PDAQV--KYMTDKIPMKRTGELSEIAAMICFMASQSAAS 213
                789********************************************************************9988764478999*****************************************************************************************864..........44444..45889999999999999999999999999986 PP

>> TIGR03206  benzo_BadH: 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  114.0   2.6   4.5e-36   1.5e-33      23     235 ..       4     212 ..       1     220 [. 0.95

  Alignments for each domain:
  == domain 1    score: 114.0 bits;  conditional E-value: 4.5e-36
  TIGR03206  23 faeegakvavldlnaeaaekvaaairekggkaeavavditdrasvdaavaaaeealgpvdvlvnnagwdvlkpfl..ktekaewerliainltgalymhhavlkgmverkagrivniasdaarvgssgeavyaackgglvafsktlarelarhgitvnvvcpgptdtalledvkseaekpeklieaftraiplgrlgkpddlagailflasddaa 235
                +a+ ga+ ++ldln +a  +  a++  +  +  ++a+d+t     + avaa+ +    +d+lv+ ag     +++  k +++++++++a+nl g + m  avl+ m er+ grivnias a++ g +g   y++ k g++ ++k + +e+a  git n + p    t ++      a+ p+  ++ +t  ip+ r g+  ++a  i f+as+ aa
  MMETSP1137-20121227|244_1   4 LADRGARXCLLDLNEKALSRAVASLSLTPXNLMTIATDVTVDGNSERAVAAIVRRWSRIDILVQAAGITGATNLTtdKVDPSNFDKVLAVNLRGIFLMCRAVLQVMRERNYGRIVNIASIAGKEGNAGMLAYSTSKAGVIGLTKVIGKEFAETGITCNALSPAVVRTEMV------AAMPDAQVKYMTDKIPMKRTGELSEIAAMICFMASQSAA 212
                6889*****************************************************************99999755789************************************************************************************999987......56788899999************************9987 PP

>> TIGR02415  23BDH: acetoin reductases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  108.8   0.4   1.9e-34   6.4e-32      19     235 ..       3     209 ..       1     213 [. 0.88

  Alignments for each domain:
  == domain 1    score: 108.8 bits;  conditional E-value: 1.9e-34
  TIGR02415  19 rLakdGfavavadlneetaketakelkekgtkavavkldvsdkseveeaveqaveklGeldvlvnnaGvalvtpil..eiteeeleklynvnvkgvlfGiqaaaekfkklkhkGkiinaasiagvegspelsaysstkfavrgltqtaakeLakkgitvnayaPGivktemreeideklaelagkeigekleefsseiklGresePedvaelvsflase 235
                 La+ G    + dlne+++ +++  l+ +  + + + +dv+   + e+av   v+++  +d+lv  aG++  t ++  ++++ +++k+ +vn+ g++  +  a+ +  ++++ G+i+n asiag+eg++ + ays++k  v glt++  ke+a+ git na +P +v+tem + +  +++           ++++++i + r+ e +++a+++ f+as+
  MMETSP1137-20121227|244_1   3 ALADRGARXCLLDLNEKALSRAVASLSLTPXNLMTIATDVTVDGNSERAVAAIVRRWSRIDILVQAAGITGATNLTtdKVDPSNFDKVLAVNLRGIFL-MCRAVLQVMRERNYGRIVNIASIAGKEGNAGMLAYSTSKAGVIGLTKVIGKEFAETGITCNALSPAVVRTEMVAAMPDAQV-----------KYMTDKIPMKRTGELSEIAAMICFMASQ 209
                689999999************************************************************9999875227999*************877.55567788888999**********************************************************998776555...........5566666666666666666666666665 PP

>> TIGR01832  kduD: 2-deoxy-D-gluconate 3-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  103.7   1.2   6.7e-33   2.3e-30      24     232 ..       3     212 ..       1     227 [. 0.86

  Alignments for each domain:
  == domain 1    score: 103.7 bits;  conditional E-value: 6.7e-33
  TIGR01832  24 glaeaGadiv..gvgiselsetqekvealGrkflslkadladeeaakalvdeaveeagkidilvnnaGiirredav..efsekdwddvlnvnlkavfllsqavakkllkqGrkgkiiniasllsfqGGirvpsytasksavaGltkllanewakkginvnaiaPGyletnntealradekrnaaileriPagrwGepedlagaavflassasd 232
                +la+ Ga       + ++ls + + ++ +  +++++  d++   + ++ v+ +v +  +idilv  aGi    +    ++  +++d+vl vnl+ +fl+++av + ++++ + g+i+nias+    G   + +y++sk +v+Gltk++ +e+a++gi  na++P  + t+  +a+ + +   ++++++iP  r Ge +++a  + f+as+++ 
  MMETSP1137-20121227|244_1   3 ALADRGARXCllDLNEKALSRAVASLSLTPXNLMTIATDVTVDGNSERAVAAIVRRWSRIDILVQAAGITGATNLTtdKVDPSNFDKVLAVNLRGIFLMCRAVLQ-VMRERNYGRIVNIASIAGKEGNAGMLAYSTSKAGVIGLTKVIGKEFAETGITCNALSPAVVRTEMVAAMPDAQ--VKYMTDKIPMKRTGELSEIAAMICFMASQSAA 212
                6677676644004456667777778888889999***********************************98776542257789******************9975.566667***********************************************************99997655..5799***********************98664 PP

>> TIGR01831  fabG_rel: putative 3-oxoacyl-(acyl-carrier-protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.9   2.6   2.9e-30     1e-27      41     225 ..      26     212 ..       1     218 [. 0.81

  Alignments for each domain:
  == domain 1    score: 94.9 bits;  conditional E-value: 2.9e-30
  TIGR01831  41 aairaqggnarllkfdvadrvavrevleadiaehgayygvvlnagiardaafpa..lseedwdavietnldgfynvihplvmpmirarkggriitlasvsgvmgnrgqvnysaakagligatkalavelakrkitvnciapglidtemvaevekdlkeal.klvpmkrvgkaeevaalaaflmsddaa 225
                a++  +  n   +  dv+   +   ++ a + +      +v +agi+  + + +  +   ++d v+  nl g++ + +  v+ ++r r+ gri+ +as++g  gn g + ys++kag+ig tk +  e+a+  it n ++p ++ temva ++++ ++ + + +pmkr g+ +e+aa+++f+ s++aa
  MMETSP1137-20121227|244_1  26 ASLSLTPXNLMTIATDVTVDGNSERAVAAIVRRWSRIDILVQAAGITGATNLTTdkVDPSNFDKVLAVNLRGIFLMCR-AVLQVMRERNYGRIVNIASIAGKEGNAGMLAYSTSKAGVIGLTKVIGKEFAETGITCNALSPAVVRTEMVAAMPDAQVKYMtDKIPMKRTGELSEIAAMICFMASQSAA 212
                5555555666666666665555555566666666666678899999877665432277789************98776.5678889****************************************************************9998766666268*********************9987 PP

>> TIGR03971  SDR_subfam_1: oxidoreductase, SDR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.3   0.7   2.1e-29   7.3e-27      53     251 ..      21     212 ..       9     221 .. 0.87

  Alignments for each domain:
  == domain 1    score: 92.3 bits;  conditional E-value: 2.1e-29
  TIGR03971  53 ldetaklvealGrkvlarkadvrkleelravveegveefGrldvvvanaGvlsygraf..elseeqWdtvldvnlkGvWktvkavvPalierknGGsiiivssvaglkalpglahyaaakhGlvgltktlanelaeygirvnsihPtsvdtamiepeamrelfakreeaaraflpalpvsglvepedvadvvawlasdesr 251
                l ++++ +  +    ++  +dv    + + +v+  v ++ r+d++v  aG+ + +++    +++ ++d+vl vnl+G++  ++av+ ++ er+  G i+ ++s ag  +  g   y+++k G++gltk + +e ae gi  n+++P  v+t+m++  am ++ +k+        ++ p++   e  ++a+++ ++as+ ++
  MMETSP1137-20121227|244_1  21 LSRAVASLSLTPXNLMTIATDVTVDGNSERAVAAIVRRWSRIDILVQAAGITGATNLTtdKVDPSNFDKVLAVNLRGIFLMCRAVLQVMRERN-YGRIVNIASIAGKEGNAGMLAYSTSKAGVIGLTKVIGKEFAETGITCNALSPAVVRTEMVA--AMPDAQVKYM------TDKIPMKRTGELSEIAAMICFMASQSAA 212
                555666666666677788889988889999*********************9988754227999**************************998.899*********************************************************9..6666555442......4556777777999999999999999876 PP

>> TIGR02632  RhaD_aldol-ADH: rhamnulose-1-phosphate aldolase/alcohol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.9   1.5   7.5e-22   2.6e-19     432     604 ..       2     172 ..       1     220 [. 0.88

  Alignments for each domain:
  == domain 1    score: 66.9 bits;  conditional E-value: 7.5e-22
  TIGR02632 432 rrlvdeGahvvladldaeaaeavaaelvdkfGadkavalkldvtdeeavkaafaevalayGGvdivvnnaGiavskpleete..leeWdlnldilatGyflvareaarllrkqglggnlvfiasknavvakknalaysaakaaeahlvrllaielaelgirvntvaPdavlrGsg 604
                  l+d+Ga   l dl+++a+    a l       + +++  dvt + + + a+a++++ +  +di+v+ aGi+ +++l   +   +++d+ l+++ +G fl++r   +++r+++  g +v ias  +   + + lays++ka  + l +++  e ae+gi  n++ P+ v+r   
  MMETSP1137-20121227|244_1   2 TALADRGARXCLLDLNEKALSRAVASLS--LTPXNLMTIATDVTVDGNSERAVAAIVRRWSRIDILVQAAGITGATNLTTDKvdPSNFDKVLAVNLRGIFLMCRAVLQVMRERNY-GRIVNIASIAGKEGNAGMLAYSTSKAGVIGLTKVIGKEFAETGITCNALSPA-VVRTEM 172
                679*****************99999998..7788899999*********************************99998765534789************************9987.58*************************************************6.566554 PP

>> TIGR03325  BphB_TodD: cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.1   0.5   1.4e-16   4.7e-14      28     250 ..       7     221 ..       2     229 .. 0.82

  Alignments for each domain:
  == domain 1    score: 50.1 bits;  conditional E-value: 1.4e-16
  TIGR03325  28 egarvavldksaagleele...aahgdkvvgvegdvrllddhkeavarcveafgkldtlipnagiwdystalvdipddrid.eafdevfeinvkgyllavkaalpalvasr.gsviftvsnagfypngggalytaakhavvglvkelayelapy.vrvngvapgglstdlrglksldladksissvplgdllksvlpigrmadaeeytgayvffatrgdtvpltgavln 250
                 gar ++ld  ++ l +     +  + ++++++ dv +  + ++ava  v  + ++d+l+  agi        ++  d++d   fd+v  +n++g +l  +a+l ++ + + g ++   s ag   n g   y+++k  v+gl k +  e+a   +  n ++p  + t++       + d  +        +++ +p+ r  +  e +    f+a+++ + p + a++ 
  MMETSP1137-20121227|244_1   7 RGARXCLLDLNEKALSRAVaslSLTPXNLMTIATDVTVDGNSERAVAAIVRRWSRIDILVQAAGIT----GATNLTTDKVDpSNFDKVLAVNLRGIFLMCRAVLQVMRERNyGRIVNIASIAGKEGNAGMLAYSTSKAGVIGLTKVIGKEFAETgITCNALSPAVVRTEMV----AAMPDAQVK------YMTDKIPMKRTGELSEIAAMICFMASQSAASPQASALMR 221
                599999999999988765411156799*************************************95....55678889999356*********************9987652777777899******************************97538888888877766654....445555443......456778888999999999888999999999888888775 PP

>> TIGR02685  pter_reduc_Leis: pteridine reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.4   0.7     5e-10   1.7e-07      70     249 ..      47     212 ..       7     225 .. 0.75
   2 ?   -2.3   0.0       1.2     4e+02      47      95 ..     287     340 ..     280     345 .] 0.65

  Alignments for each domain:
  == domain 1    score: 28.4 bits;  conditional E-value: 5e-10
  TIGR02685  70 sceeiidacfrafGrcdvlvnnasafyptpllrgdaeegaaekkslevqvaelfGsnaiaplllikafaqrqkgtraelrssnl.sivnlvdamtdqpllgfslytmakealeGltrsaalelaslqirvngvapGls..llpdampeevkeeyrrkvplgqreasaeqiadvviflvskkak 249
                  e  + a  r + r d+lv  a     t l   d+ +  ++ +       +++  n    +l+ +a  q +       r +n+  ivn++    +    g   y+ +k  + Glt+    e+a  +i  n+++p +    +  amp+ + +    k+p+ +      +ia ++ f+ s++a 
  MMETSP1137-20121227|244_1  47 NSERAVAAIVRRWSRIDILVQAAGITGATNLT-TDKVDP-SNFD-------KVLAVNLRGIFLMCRAVLQVM-------RERNYgRIVNIASIAGKEGNAGMLAYSTSKAGVIGLTKVIGKEFAETGITCNALSPAVVrtEMVAAMPDAQVKYMTDKIPMKR-TGELSEIAAMICFMASQSAA 212
                55666777778888888888777766666654.455552.2222.......222333334467777766655.......566663599***99999****************************************96225778999998888899***965.567889**********9986 PP

  == domain 2    score: -2.3 bits;  conditional E-value: 1.2
  TIGR02685  47 naeransavvvkadl.snsas.llssc...eeiidacfrafGrcdvlvnnasaf 95 
                 a+  ++ ++++adl s+sa+ l  +c     i++   r++      + n+s f
  MMETSP1137-20121227|244_1 287 GADHHETQIMMHADLlSESATpLRRAClgmRTILEVKLRQWANAPARLANSSYF 340
                566778889999996355654255556333567888888888777777777766 PP

>> TIGR01500  sepiapter_red: sepiapterin reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   3.9e-05     0.013      85     202 ..      58     174 ..       6     193 .. 0.80

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 3.9e-05
  TIGR01500  85 eyeri.llinnaGtlgdvskrekelsDsknvqkyydsnvtslvvltsellkklkelqglektvvnlssLcaikpfkswalYCaskaaRdmffqvLaleek.edvkvLnYapGvlDtdmqs 202
                 ++ri +l++ aG  g +  +++   D  n +k  + n+  +  +   +l++++e +     +vn++s++  +   ++  Y +ska    + +v+  e     +     +p v+ t+m  
  MMETSP1137-20121227|244_1  58 RWSRIdILVQAAGITGATNLTTD-KVDPSNFDKVLAVNLRGIFLMCRAVLQVMRERN--YGRIVNIASIAGKEGNAGMLAYSTSKAGVIGLTKVIGKEFAeTGITCNALSPAVVRTEMVA 174
                46676466777777777666655.789999***********9999999******654..4579************************99999**99999855566666899999999965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (345 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       112  (0.0273038); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                        12  (0.0029254); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.39u 0.18s 00:00:00.57 Elapsed: 00:00:00.48
# Mc/sec: 948.67
//
Query:       MMETSP1137-20121227|246_1  [L=173]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.2e-41  139.6   0.0    1.6e-41  139.2   0.0    1.1  1  TIGR01066 rplM_bact: ribosomal protein L13
    1.2e-11   43.0   0.1    8.1e-11   40.3   0.1    1.9  1  TIGR01077 L13_A_E: ribosomal protein L13


Domain annotation for each model (and alignments):
>> TIGR01066  rplM_bact: ribosomal protein L13
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  139.2   0.0     8e-45   1.6e-41       9     133 ..      19     143 ..      13     147 .. 0.98

  Alignments for each domain:
  == domain 1    score: 139.2 bits;  conditional E-value: 8e-45
  TIGR01066   9 everkwyvvdaagktLGrlasevakllrGkhkatytPnvdvGDyviviNaekvkltgkkleqkvyyrhsgyvgglkektlkellekkpekvlekAvkgmlpknklgrkllkklkvykgsehphea 133
                ever+w+++d  g ++Grlas++ + l+Gkhk+ty    d GD+v+v N  k +ltg+k  +k y+r+sgy+gg+++ + ++l +k+p + l+ Av gmlpkn+l+ +++++l+++ g+eh hea
  MMETSP1137-20121227|246_1  19 EVERAWHLIDGYGLVMGRLASKICNFLQGKHKPTYSMVNDRGDFVVVXNVAKTVLTGDKSWKKRYFRYSGYPGGMHSMSYEQLFAKNPLEPLRRAVFGMLPKNRLREQRMRRLRLFPGPEHLHEA 143
                689************************************************************************************************************************98 PP

>> TIGR01077  L13_A_E: ribosomal protein L13
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.3   0.1     4e-14   8.1e-11       2     111 ..      26     145 ..      25     163 .. 0.82

  Alignments for each domain:
  == domain 1    score: 40.3 bits;  conditional E-value: 4e-14
  TIGR01077   2 vidaeglilGrLaskvakrlL............eGekvvvvnaekivisGdkevvvekYkeklekkkktnprrgPffprapdrilkrtvrgmlpkkkarGrealerlkvyvGiPkeldkkkl 111
                +id+ gl++GrLask+   l             +G  vvv n  k v++Gdk++ ++ ++       ++  +    f ++p + l+r+v gmlpk++ r ++ ++rl+ + G P++l++ ++
  MMETSP1137-20121227|246_1  26 LIDGYGLVMGRLASKICNFLQgkhkptysmvndRGDFVVVXNVAKTVLTGDKSWKKRYFRYSGYPGGMHSMSYEQLFAKNPLEPLRRAVFGMLPKNRLREQR-MRRLRLFPG-PEHLHEAEF 145
                69**************9755322222222223357789****************999999988888888889999**********************99876.8******99.888887776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (173 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        33  (0.00804486); expected 82.0 (0.02)
Passed bias filter:                       33  (0.00804486); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.17u 0.17s 00:00:00.34 Elapsed: 00:00:00.28
# Mc/sec: 815.50
//
Query:       MMETSP1137-20121227|247_1  [L=624]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.2e-15   55.2   0.0    2.1e-15   54.5   0.0    1.3  1  TIGR00530 AGP_acyltrn: 1-acylglycerol-3-phosphate O-acyltransferases


Domain annotation for each model (and alignments):
>> TIGR00530  AGP_acyltrn: 1-acylglycerol-3-phosphate O-acyltransferases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.5   0.0   5.1e-19   2.1e-15      17     117 ..     133     233 ..     125     242 .. 0.85

  Alignments for each domain:
  == domain 1    score: 54.5 bits;  conditional E-value: 5.1e-19
  TIGR00530  17 avlvvanHqsnlDiltlsaafapplvfiAKkeLkeipflgilllltgavfidRenkraiasllkaakkllk.egr.avgvFpeGtrskgrkilefKkGalkiA 117
                 vlvva H s lD +++ ++     + +AK e+ +ip +g + +   ++f+dR++k +++++ ka ++  +  g+ +  +FpeGt ++gr +  fK Ga+ + 
  MMETSP1137-20121227|247_1 133 SVLVVAPHYSFLDAIFMTYYEL--PSAVAKSEVARIPGIGRVARSLQTIFVDRRDKDSKRTATKAIRERTEvAGWpKTLLFPEGTCTNGRALITFKPGAFSVG 233
                69***************99988..4689***************************8888888888776554245525789*******************9874 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (624 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        92  (0.0224281); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.15s 00:00:00.54 Elapsed: 00:00:00.54
# Mc/sec: 1525.21
//
Query:       MMETSP1137-20121227|248_1  [L=449]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      3e-31  106.7   0.6    1.3e-29  101.3   0.1    2.4  2  TIGR02152 D_ribokin_bact: ribokinase
    3.4e-07   27.3   0.4    1.2e-06   25.5   0.3    1.7  1  TIGR03168 1-PFK: hexose kinase, 1-phosphofructokinase family
    4.2e-07   27.1   0.2    1.1e-06   25.8   0.2    1.6  1  TIGR03828 pfkB: 1-phosphofructokinase
  ------ inclusion threshold ------
       0.01   12.8   0.5      0.032   11.2   0.1    1.9  3  TIGR02198 rfaE_dom_I: bifunctional protein RfaE, domain I


Domain annotation for each model (and alignments):
>> TIGR02152  D_ribokin_bact: ribokinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    3.2   0.0    0.0095       9.7       1      20 [.      65      84 ..      65      99 .. 0.77
   2 !  101.3   0.1   1.3e-32   1.3e-29      30     297 ..     140     434 ..     133     435 .. 0.80

  Alignments for each domain:
  == domain 1    score: 3.2 bits;  conditional E-value: 0.0095
  TIGR02152  1 ivvvGSinvDlvlrvkrlpk 20
               ++vvGSinvDl  + ++ ++
  MMETSP1137-20121227|248_1 65 VLVVGSINVDLYQKLSSAAE 84
               79*********988876654 PP

  == domain 2    score: 101.3 bits;  conditional E-value: 1.3e-32
  TIGR02152  30 fkiaaGGKGANQAvaaarlgaevsmigkvGkDef..geellenlkke.gidteyvkkvkktstGvAlilvdeegeNsIvvvaGaneeltpedvka.aeekikesdlvllQlEipletveealkiakkagvkvllnPAPaekkldeellslvdiivpNetEaeiLtgie.........vedledaekaaekllekgv..kaviitlGskGal.....lvskd...ekklipalkv.....kavDttaAGDtFigalavaLaeg.ksledavrfanaaaalsVtrkGaqssiPtkeeve 297
                f++ +GG GA  A aaa  + +++++++ G+ +    ++ll +l +  +++t+  ++v +  tG+A+i + e  + +I++  Gan+ + pe  +a  + +i+e+  v+lQ  +p+++++ ++ +a k  + v+++    ++ +d   l +++ i p etE+ +++g+              +++++  + +++ g    av++tlG  Ga+     ++s +   +++ + ++       +  Dtt+AGD+F g++++aL    k ++da++ a+aaa+l+V  +Ga +s+Pt++ +e
  MMETSP1137-20121227|248_1 140 FEQKTGGXGAXAA-AAAGXTFRCELVCNFGRESExsNKALLADLXEFgNVNTSRXQTV-DGXTGTAYIXLFEXXDXAILLLGGANQAWAPEPXHAgLQXAISECVAVMLQRXVPEHVNRXVAXAAXKCXKPVIMDVGGTDAPVDXXXLPHITXIAPXETELTFISGVXtsvagxpslXLXRQAVSSLXAXFSAAGNsdVAVLVTLGGMGAVhfapaWASDSdtaHETSVGTFPLgtpdgRPKDTTGAGDCFRGSFVAALYGRgKGVADALTWAAAAASLAVEVEGAMPSMPTQKAIE 434
                77899*****755.67777889********9875114567888887626999988877.6789****************************988736789***************************************99************************9873322221111234666777778888888445789*******9822222333332334444555544222225679****************87669*****************************9987 PP

>> TIGR03168  1-PFK: hexose kinase, 1-phosphofructokinase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.5   0.3   1.1e-09   1.2e-06     139     297 ..     248     432 ..     242     440 .. 0.72

  Alignments for each domain:
  == domain 1    score: 25.5 bits;  conditional E-value: 1.1e-09
  TIGR03168 139 rgvpedfyaelielakekgakvilDtsg..eaLrealkakplliKPNkeEleelvgrelkteee.........vieaarellekGve..nvlvSlGadGallv......tke.......galkaeapkvevvstvGAGDsmvAgfllale.kglsleealrlavAagsaaassegtelpdledvee 297
                r vpe++ + ++ +a +  ++vi+D+ g  +++      +++ i P + El+ + g   +             v ++   + ++G +  +vlv+lG+ Ga+ +      +++       g++   +p+++ ++t+GAGD + + f++al  +g+ +++al+ a Aa+s a+  eg ++p++ + ++
  MMETSP1137-20121227|248_1 248 RXVPEHVNRXVAXAAXKCXKPVIMDVGGtdAPVDXXXLPHITXIAPXETELTFISGVXTSVAGXpslxlxrqaVSSLXAXFSAAGNSdvAVLVTLGGMGAVHFapawasDSDtahetsvGTFPLGTPDGRPKDTTGAGDCFRGSFVAALYgRGKGVADALTWAAAAASLAVEVEG-AMPSMPTQKA 432
                668888888999999999999999997722456666666999999999999999997776665566777666666666666777754226899******9976222222122111111134555679999*****************98736889****************9999.5555444444 PP

>> TIGR03828  pfkB: 1-phosphofructokinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.8   0.2     1e-09   1.1e-06     139     297 ..     248     435 ..     241     443 .. 0.68

  Alignments for each domain:
  == domain 1    score: 25.8 bits;  conditional E-value: 1e-09
  TIGR03828 139 rgvpedlyaelikllrekgakvilDtsge..aLlkvlkakplliKPNkeEleellg.........relk.teeevieaarkllekgve..nvlislGadGallv.....tkegalfaka........pkievkstvGAGDsmvAgfllale.kglsleealrlavAvgaaaassegt..elpdlediee 297
                r vpe++   ++ ++ +  ++vi+D+ g   ++      + + i P + El+ + g           l    ++v ++   + ++g +  +vl++lG+ Ga+ +     +++++ ++++        p+++ k+t+GAGD   + f++al+ +g+ +++al++a A+++ a+  eg+  ++p++++ie+
  MMETSP1137-20121227|248_1 248 RXVPEHVNRXVAXAAXKCXKPVIMDVGGTdaPVDXXXLPHITXIAPXETELTFISGvxtsvagxpS-LXlXRQAVSSLXAXFSAAGNSdvAVLVTLGGMGAVHFapawaSDSDTAHETSvgtfplgtPDGRPKDTTGAGDCFRGSFVAALYgRGKGVADALTWAAAAASLAVEVEGAmpSMPTQKAIEA 435
                667888888888888889999999997751145555555677899999999999996655555431.221334466666677777776336899*******97622222223333322111222333999*******************983577789***************9994223555555554 PP

>> TIGR02198  rfaE_dom_I: bifunctional protein RfaE, domain I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0      0.44   4.5e+02       8      21 ..      63      76 ..      59      83 .. 0.86
   2 ?   -3.1   0.0      0.67   6.8e+02     161     206 ..     254     303 ..     250     309 .. 0.70
   3 ?   11.2   0.1   3.2e-05     0.032     260     303 ..     380     424 ..     368     434 .. 0.86

  Alignments for each domain:
  == domain 1    score: -2.5 bits;  conditional E-value: 0.44
  TIGR02198  8 akvlvvGDlmlDey 21
                 vlvvG + +D y
  MMETSP1137-20121227|248_1 63 PSVLVVGSINVDLY 76
               579*********99 PP

  == domain 2    score: -3.1 bits;  conditional E-value: 0.67
  TIGR02198 161 vveeviaaarekgkpvlvDpkgk....dfskYkgatlltPNrkEleeavg 206
                v + v  aa +  kpv++D  g+    d     + t + P ++El+ + g
  MMETSP1137-20121227|248_1 254 VNRXVAXAAXKCXKPVIMDVGGTdapvDXXXLPHITXIAPXETELTFISG 303
                66778889999999999998776222245566777777777777766655 PP

  == domain 3    score: 11.2 bits;  conditional E-value: 3.2e-05
  TIGR02198 260 DVtGAGDtViavl.alalaagasleeaaelaNaaagvvvgklGta 303
                D tGAGD   +++ a+    g+ +++a+++a aaa+++v+  G+ 
  MMETSP1137-20121227|248_1 380 DTTGAGDCFRGSFvAALYGRGKGVADALTWAAAAASLAVEVEGAM 424
                99******997761666689*******************988875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (449 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        49  (0.0119454); expected 82.0 (0.02)
Passed bias filter:                       38  (0.00926377); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.36u 0.15s 00:00:00.51 Elapsed: 00:00:00.44
# Mc/sec: 1346.89
//
Query:       MMETSP1137-20121227|249_1  [L=70]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       124  (0.0302292); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.37
# Mc/sec: 249.71
//
Query:       MMETSP1137-20121227|250_1  [L=297]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (297 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       194  (0.047294); expected 82.0 (0.02)
Passed bias filter:                      127  (0.0309605); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.15s 00:00:00.42 Elapsed: 00:00:00.78
# Mc/sec: 502.57
//
Query:       MMETSP1137-20121227|252_1  [L=293]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (293 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        97  (0.023647); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.11s 00:00:00.34 Elapsed: 00:00:00.42
# Mc/sec: 920.78
//
Query:       MMETSP1137-20121227|253_1  [L=410]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.4e-06   25.4   0.0    7.8e-06   24.2   0.0    1.6  1  TIGR01444 fkbM_fam: methyltransferase, FkbM family


Domain annotation for each model (and alignments):
>> TIGR01444  fkbM_fam: methyltransferase, FkbM family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.2   0.0   1.9e-09   7.8e-06       2     142 ..     115     275 ..     114     276 .. 0.63

  Alignments for each domain:
  == domain 1    score: 24.2 bits;  conditional E-value: 1.9e-09
  TIGR01444   2 viDiGAniGd.vslvfaravaegrviafEPlpdllekleenvklnnlkn........vkllnaAvgdreg.eleftvsddatgnsslaads.....elaees.........eieVevvtlddlveeag.lekvdllKiDvEGaEleVLrglaetleekvpaivlev 142
                ++ iGAn  d + l f+   + +   +fEPl d ++ l ++ +  +++           +l+ Av++++   ++++ s++ +g+ sl              +         ++ V++v+l +++e+     +v+l K+D +G + +V++ ++e ++ + +a+ lev
  MMETSP1137-20121227|253_1 115 ILEIGANSRDtMDLQFLPQHPDAFLLSFEPLLDKYATLLQRNSRPDRRSplghhharGIVLPFAVSSQDNgVATLKISGQIDGCASLLDAVssyfsT----RctnrsgvaeARRVPTVSLWRVMESWLpGRDVQLAKVDAQGLDVDVIQSAREHVH-RLKAVQLEV 275
                5677887654156667777777888999999988877654444433333233211122344556665544344444444444444443333555441....1334557788788************987899*****************9777555.667777775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (410 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        72  (0.0175524); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.32u 0.09s 00:00:00.41 Elapsed: 00:00:00.89
# Mc/sec: 608.04
//
Query:       MMETSP1137-20121227|254_1  [L=493]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (493 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        81  (0.0197465); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.17s 00:00:00.50 Elapsed: 00:00:00.62
# Mc/sec: 1049.53
//
Query:       MMETSP1137-20121227|255_1  [L=147]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (147 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.13s 00:00:00.31 Elapsed: 00:00:00.32
# Mc/sec: 606.32
//
Query:       MMETSP1137-20121227|256_1  [L=255]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      8e-58  193.0   0.0      1e-57  192.7   0.0    1.1  1  TIGR00723 ttdB_fumA_fumB: hydrolyase, tartrate beta subunit/fumarate domain protein, Fe-S type
     0.0001   19.4   0.1    0.00015   18.9   0.0    1.2  1  TIGR00722 ttdA_fumA_fumB: hydrolyase, tartrate alpha subunit/fumarate domain protein, Fe-S type


Domain annotation for each model (and alignments):
>> TIGR00723  ttdB_fumA_fumB: hydrolyase, tartrate beta subunit/fumarate domain protein, Fe-S type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  192.7   0.0   4.9e-61     1e-57       3     169 .]      89     252 ..      87     252 .. 0.98

  Alignments for each domain:
  == domain 1    score: 192.7 bits;  conditional E-value: 4.9e-61
  TIGR00723   3 vkelkvgdvvyltGkiitarDeahkrllelldegkelPfdleekvifhaGPivkkneepirvvsvGPttsarmdsfeeelleklgvkavigkGgmskkvvealkkygavylaavgGcaallaks.vkkveavafedLGmPeaiweleveefGPlivaiDskGnslfke 169
                +++ +v ++++l+G++i+arD ah++l+e ld+g+ lP +++++++++aGP+++++++   ++s GPtt++rmds++  ++   g++++++kG++sk+v++a+k yg++yl ++gG+aa+la++ +kk+e++ + +LGm ea+w++eve+f P++v +D+kG+++fk+
  MMETSP1137-20121227|256_1  89 LTKCPVKTRLSLSGTLIVARDIAHAKLKERLDAGQGLPSYMRDHAVYYAGPAKTPEGYA--SGSFGPTTAGRMDSYVADFQAAGGSMVMLAKGNRSKQVTKACKTYGGFYLGSIGGPAAILAQNcIKKMEVLEYPELGM-EAVWKIEVENF-PAFVVVDDKGDDFFKK 252
                78999****************************************************98..*************************************************************999**************.***********.*************985 PP

>> TIGR00722  ttdA_fumA_fumB: hydrolyase, tartrate alpha subunit/fumarate domain protein, Fe-S type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.0   7.4e-08   0.00015     234     270 ..       4      40 ..       2      43 .. 0.93

  Alignments for each domain:
  == domain 1    score: 18.9 bits;  conditional E-value: 7.4e-08
  TIGR00722 234 lgGkvtaldvkvevaarhtaslpvavsiqCwanRrat 270
                +gGk+   dv+v   +rh as pv++ + C a+R+a 
  MMETSP1137-20121227|256_1   4 FGGKYFCHDVRVIRMPRHGASCPVGIGVSCSADRQAL 40 
                79*********************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (255 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       101  (0.0246221); expected 82.0 (0.02)
Passed bias filter:                       99  (0.0241346); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.23u 0.16s 00:00:00.39 Elapsed: 00:00:00.32
# Mc/sec: 1051.79
//
Query:       MMETSP1137-20121227|257_1  [L=129]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (129 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       202  (0.0492443); expected 82.0 (0.02)
Passed bias filter:                      141  (0.0343735); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.13s 00:00:00.31 Elapsed: 00:00:00.36
# Mc/sec: 472.96
//
Query:       MMETSP1137-20121227|258_1  [L=296]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.2e-26   91.0   0.0    3.8e-26   89.3   0.0    1.7  1  TIGR04075 bacter_Pnkp: polynucleotide kinase-phosphatase
    1.7e-15   55.1   0.0    1.6e-12   45.3   0.0    2.2  2  TIGR00668 apaH: bis(5'-nucleosyl)-tetraphosphatase (symmetrical)


Domain annotation for each model (and alignments):
>> TIGR04075  bacter_Pnkp: polynucleotide kinase-phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.3   0.0   1.9e-29   3.8e-26     184     428 ..      23     254 ..      15     272 .. 0.80

  Alignments for each domain:
  == domain 1    score: 89.3 bits;  conditional E-value: 1.9e-29
  TIGR04075 184 iiGdvhGCldeleelleklGyeveeeeegkavevthpegrkavflGdlvdrGpdspdvlrlvmsmvkagaalcvpGnheekllrklrGrkvkl....thGlaetleqlaaeseefreevkefldglvshyvlddGklvvahaGlkeeyqgrasgrvrefalyGettGetdefGlPv....rydWaadyrGkalvvyGhtpvkeaewvnnticidtGcvfGGkltalryPerelvsvpaekvylepvkPlatea 428
                 iGdvhGCl+el+++l kl  +                g +++flGd++ +Gp   +++rlv++ +++ +   + Gnhe+ llr+++ r+  l    +hG+ e    +a   e++ +   ++l++    + + +  ++  haGl+  +   a +r +++a        +d+ G P        Wa ++rG   v++Gh +  + ++   +  idtGcv+GG+ltal  P   l +vpa+++y++p   ++++ 
  MMETSP1137-20121227|258_1  23 FIGDVHGCLHELSQMLGKLQLRR-------------RRGDRVIFLGDVIAKGPFPLETFRLVKKTIASISGELLLGNHEASLLRYFDQRDAGLpaanRHGVGEGNLAIA---EALSQIEIQWLRSRPRVLPIPELGIIAVHAGLRAGIP-LAKQRPQDLAA----MRSLDDTGAPSsragNTSWALSWRGPQHVIFGHDAKRRLQRYEFATGIDTGCVYGGSLTALVVPGFALLHVPAKRAYCSPHANVSMKL 254
                59**************9996632.............35789*********************************************97776551111666666544444...4455555689999988899999999999****98764.44555555553....345666666652111468**************************************************************88776654 PP

>> TIGR00668  apaH: bis(5'-nucleosyl)-tetraphosphatase (symmetrical)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.3   0.0   7.9e-16   1.6e-12       3     126 ..      21     153 ..      19     173 .. 0.78
   2 !    8.1   0.0   0.00017      0.35     222     256 ..     194     227 ..     159     243 .. 0.78

  Alignments for each domain:
  == domain 1    score: 45.3 bits;  conditional E-value: 7.9e-16
  TIGR00668   3 tyligdlhgcydelqlllervefdpak.dtlyltgdlvargdkslevlryvkslgdav..rlvlgnhdlhllavalgikkvkpkdrld.....alleapdadel.lnwlrrqpllvvdeekklvlahagispd 126
                t +igd+hgc  el  +l ++++  ++ d++ + gd++a+g+  le++r+vk    ++  +l+lgnh+  ll  + + +   p    +      l  a+ + ++ ++wlr +p ++  +e  ++ +hag+   
  MMETSP1137-20121227|258_1  21 TVFIGDVHGCLHELSQMLGKLQLRRRRgDRVIFLGDVIAKGPFPLETFRLVKKTIASIsgELLLGNHEASLLRYFDQRDAGLPAANRHgvgegNLAIAEALSQIeIQWLRSRPRVLPIPELGIIAVHAGLRAG 153
                789********************987659999*******************98766542279**********99977766666433320112223333443333389**********************9765 PP

  == domain 2    score: 8.1 bits;  conditional E-value: 0.00017
  TIGR00668 222 sivfghwaslvdegtpegiyaldtgcvwgnrltll 256
                 ++fgh a    +   e   ++dtgcv+g+ lt l
  MMETSP1137-20121227|258_1 194 HVIFGHDAKRRLQ-RYEFATGIDTGCVYGGSLTAL 227
                5788888875544.45667799***********98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (296 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        79  (0.0192589); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.24u 0.19s 00:00:00.43 Elapsed: 00:00:00.43
# Mc/sec: 908.58
//
Query:       MMETSP1137-20121227|259_1  [L=240]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (240 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        88  (0.0214529); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.24s 00:00:00.35 Elapsed: 00:00:00.35
# Mc/sec: 905.07
//
Query:       MMETSP1137-20121227|260_1  [L=226]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (226 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        70  (0.0170648); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.21s 00:00:00.36 Elapsed: 00:00:00.45
# Mc/sec: 662.88
//
Query:       MMETSP1137-20121227|262_1  [L=155]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (155 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        85  (0.0207216); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.26s 00:00:00.35 Elapsed: 00:00:00.28
# Mc/sec: 705.46
//
Query:       MMETSP1137-20121227|263_1  [L=1866]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1866 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       168  (0.0409556); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.79u 0.38s 00:00:01.17 Elapsed: 00:00:01.72
# Mc/sec: 1431.93
//
Query:       MMETSP1137-20121227|264_1  [L=220]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (220 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        47  (0.0114578); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.11s 00:00:00.31 Elapsed: 00:00:00.35
# Mc/sec: 829.65
//
Query:       MMETSP1137-20121227|265_1  [L=285]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (285 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       102  (0.0248659); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.16s 00:00:00.39 Elapsed: 00:00:00.28
# Mc/sec: 1297.13
//
Query:       MMETSP1137-20121227|266_1  [L=517]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (517 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       825  (0.201121); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                        29  (0.00706972); expected 4.1 (0.001)
Passed Fwd filter:                        10  (0.00243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.85u 0.18s 00:00:01.03 Elapsed: 00:00:01.10
# Mc/sec: 620.35
//
Query:       MMETSP1137-20121227|267_1  [L=761]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (761 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        91  (0.0221843); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.49u 0.14s 00:00:00.63 Elapsed: 00:00:00.64
# Mc/sec: 1569.43
//
Query:       MMETSP1137-20121227|268_1  [L=115]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (115 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        69  (0.0168211); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.16s 00:00:00.31 Elapsed: 00:00:00.60
# Mc/sec: 252.98
//
Query:       MMETSP1137-20121227|269_1  [L=157]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.6e-25   87.6   6.0    2.3e-25   87.1   4.2    1.3  1  TIGR00293 TIGR00293: prefoldin, alpha subunit
  ------ inclusion threshold ------
       0.11   10.6   6.2       0.47    8.6   0.2    2.3  2  TIGR03930 WXG100_ESAT6: WXG100 family type VII secretion target


Domain annotation for each model (and alignments):
>> TIGR00293  TIGR00293: prefoldin, alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.1   4.2   1.1e-28   2.3e-25       2     126 ..      20     145 ..      19     156 .. 0.91

  Alignments for each domain:
  == domain 1    score: 87.1 bits;  conditional E-value: 1.1e-28
  TIGR00293   2 qqlaaelqqlqeevealqaeiaalraliaeleeaietleslkka.egkevLVpvgaglyvkakvkdadkvlVsiGagyyvekdleeAieilkkkieelekaieklqeelqelaseaqeieqelqqk 126
                +ql++ +  ++ee++ lq  +++l+ ++ +l  ++ +le++ k  +g  +LVp++++lyv+++ ++ + vlV++G+gyy+ek+l eA ++l++ki  ++ + +++q+ ++ + ++ q+    +++k
  MMETSP1137-20121227|269_1  20 EQLSQVKSSIEEELQGLQGALQQLKVSTDKLVISKLALEQVHKTsAGTRMLVPLTSSLYVPGETTELETVLVDVGTGYYIEKSLPEAQSFLDRKIALIKGQGTTVQQTMALKNQNLQQTLSVMREK 145
                799***************************************9999*******************************************************9999999988888777765544443 PP

>> TIGR03930  WXG100_ESAT6: WXG100 family type VII secretion target
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   0.2   0.00023      0.47       5      37 ..      18      50 ..      16      53 .. 0.90
   2 ?    4.5   1.0    0.0044         9      53      84 ..     125     156 ..     109     157 .] 0.76

  Alignments for each domain:
  == domain 1    score: 8.6 bits;  conditional E-value: 0.00023
  TIGR03930  5 dpeeleqaAkrfqktaqelqqelqrlrseidal 37
               ++e+l q+ ++++++ q lq+ lq+l+ + d+l
  MMETSP1137-20121227|269_1 18 SFEQLSQVKSSIEEELQGLQGALQQLKVSTDKL 50
               6899**********************9999887 PP

  == domain 2    score: 4.5 bits;  conditional E-value: 0.0044
  TIGR03930  53 faewkpaaerlneaLqeiseelrqaakkfeqa 84 
                ++ +  + ++l++ L  ++e++ +a++++ qa
  MMETSP1137-20121227|269_1 125 QQTMALKNQNLQQTLSVMREKMXEAQQQMSQA 156
                45555566777888888888888888887775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (157 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       271  (0.0660653); expected 82.0 (0.02)
Passed bias filter:                      140  (0.0341297); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.19u 0.18s 00:00:00.37 Elapsed: 00:00:00.35
# Mc/sec: 592.07
//
Query:       MMETSP1137-20121227|270_1  [L=229]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (229 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        46  (0.011214); expected 82.0 (0.02)
Passed bias filter:                       33  (0.00804486); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.14s 00:00:00.33 Elapsed: 00:00:00.31
# Mc/sec: 975.02
//
Query:       MMETSP1137-20121227|271_1  [L=229]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.6e-07   26.7   0.0    3.2e-07   26.4   0.0    1.0  1  TIGR03903 TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein


Domain annotation for each model (and alignments):
>> TIGR03903  TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.4   0.0   7.8e-11   3.2e-07       4     106 ..      42     144 ..      39     148 .. 0.84

  Alignments for each domain:
  == domain 1    score: 26.4 bits;  conditional E-value: 7.8e-11
  TIGR03903   4 hkvaikllRedaaeeerlvaRFrReialCarLs.hPnivaLlDsG.eaedgllFavFeyveGrtlrevLaadGaLpaaetgrLmlqvLDalaaahdaGvvhRDLk 106
                + +aik +++   +   +v+   Rei++  rLs hP i++L +   + + g+l  vFe+++      +      Lp +   + m q L ++ + h++G+ hRD+k
  MMETSP1137-20121227|271_1  42 KYMAIKCMKNH-FDSLDQVNN-LREIQALRRLSpHPGIIKLAEVLyDQPTGRLALVFELMDMNIYELIRGRRHYLPEGRIKAYMYQLLKSMDHMHRNGIFHRDIK 144
                56788888776.555555555.58********77*******9975267789********998877777778899******************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (229 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        89  (0.0216967); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.23u 0.13s 00:00:00.36 Elapsed: 00:00:00.41
# Mc/sec: 737.21
//
Query:       MMETSP1137-20121227|272_1  [L=276]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (276 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        45  (0.0109703); expected 82.0 (0.02)
Passed bias filter:                       35  (0.00853242); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.12s 00:00:00.34 Elapsed: 00:00:00.36
# Mc/sec: 1011.92
//
Query:       MMETSP1137-20121227|273_1  [L=205]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (205 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       139  (0.0338859); expected 82.0 (0.02)
Passed bias filter:                      118  (0.0287665); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.17s 00:00:00.38 Elapsed: 00:00:00.28
# Mc/sec: 933.03
//
Query:       MMETSP1137-20121227|274_1  [L=101]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        50  (0.0121892); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.15s 00:00:00.29 Elapsed: 00:00:00.28
# Mc/sec: 459.69
//
Query:       MMETSP1137-20121227|276_1  [L=33]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (33 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        21  (0.00511945); expected 82.0 (0.02)
Passed bias filter:                       20  (0.00487567); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.15s 00:00:00.25 Elapsed: 00:00:00.36
# Mc/sec: 120.99
//
Query:       MMETSP1137-20121227|278_1  [L=207]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (207 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        71  (0.0173086); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.15s 00:00:00.36 Elapsed: 00:00:00.40
# Mc/sec: 683.04
//
Query:       MMETSP1137-20121227|279_1  [L=495]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (495 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        82  (0.0199902); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.17s 00:00:00.50 Elapsed: 00:00:00.52
# Mc/sec: 1256.43
//
Query:       MMETSP1137-20121227|280_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        15  (0.00365675); expected 82.0 (0.02)
Passed bias filter:                       15  (0.00365675); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.16s 00:00:00.27 Elapsed: 00:00:00.35
# Mc/sec: 199.87
//
Query:       MMETSP1137-20121227|281_1  [L=260]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        8.5    3.3  20.0         11    2.9  13.8    1.2  1  TIGR01478 STEVOR: variant surface antigen, stevor family


Domain annotation for each model (and alignments):
>> TIGR01478  STEVOR: variant surface antigen, stevor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9  13.8    0.0028        11     181     272 ..     140     230 ..     104     236 .. 0.74

  Alignments for each domain:
  == domain 1    score: 2.9 bits;  conditional E-value: 0.0028
  TIGR01478 181 vagvgtcalssvlltklGiaaaktaaieaiagslsvdiasklskalaginfln.ssslesalvtavgivsgaadeaesaasaatsiflPyGia 272
                 a+++t+a ss+  +    aa+k+a++ a++++ s   +s +++a ++  +   s+++ sa+v++++ ++ ++++  sa+saat     y +a
  MMETSP1137-20121227|281_1 140 AASITTSATSSAAASAATSAATKSASTSATKSAASRATKSACTSAATLAAISAtSTAITSATVSTTTFAT-TSTSNRSATSAAT-SASRYAVA 230
                5789999999999999999999999999999999999999999998777665414557777777776544.3344444444444.34445554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (260 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       415  (0.10117); expected 82.0 (0.02)
Passed bias filter:                       97  (0.023647); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.26u 0.15s 00:00:00.41 Elapsed: 00:00:00.39
# Mc/sec: 879.93
//
Query:       MMETSP1137-20121227|282_1  [L=498]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.2e-17   61.0   0.1    4.7e-13   46.8   0.1    2.2  2  TIGR01622 SF-CC1: splicing factor, CC1-like family
    1.4e-09   35.5   0.1    2.5e-07   28.1   0.0    2.4  2  TIGR01628 PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family
      6e-06   23.9   0.0    0.00054   17.5   0.0    3.0  3  TIGR01661 ELAV_HUD_SF: ELAV/HuD family splicing factor
     0.0004   16.8   0.1      0.025   10.9   0.1    2.9  2  TIGR01642 U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor


Domain annotation for each model (and alignments):
>> TIGR01622  SF-CC1: splicing factor, CC1-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.0   0.0   1.6e-05     0.016     119     191 ..     180     254 ..     140     270 .. 0.77
   2 !   46.8   0.1   4.6e-16   4.7e-13     127     312 ..     298     472 ..     291     493 .. 0.80

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 1.6e-05
  TIGR01622 119 artvfvlq.lalklreRdlkEFFskvgkvrdvrl.ikDrnSrrSkGvaYvEFydvesvqlAlaltGqkllgvPvi 191
                 r v+ ++ l+  ++  d+  FF+  ++   + + +  r  +r+ G aYv F ++e+ ++Al+l  qkl  + v 
  MMETSP1137-20121227|282_1 180 YRGVLRMRgLPYTATVDDVVQFFNYPAELSPANVhLLQRADGRASGDAYVIFDTEEAAKQALGLDKQKLGSRWVD 254
                45666553388999999*******999776554424569999**************************9888774 PP

  == domain 2    score: 46.8 bits;  conditional E-value: 4.6e-16
  TIGR01622 127 lalklreRdlkEFFskvg.kvrdvrlikDrnSrrSkGvaYvEFydvesvqlAlaltGqkllgvPviv.qaseAEKNraakaatelsgdipnsiadlkLYvGnlhfnitEqeLrqiFepFGeielvqlqkDpetGrskGyGFiqFsdaeeakeAleklNGlelAGReikvglasDvteesdaslaskfe 312
                l+  ++e  +k F s v+ +   +++i+  n +r  G+aYvE   +e   + l+   q + g+ + +   s+ E   a +     +g +   + + kL   +l ++ tE+++   F+p  ++  vq+ +++++ ++ G+GF+qF+ +e a +Alek N   l  R + v   + +  e++ + a +++
  MMETSP1137-20121227|282_1 298 LPWNATEDAIKKFLSPVAaPAGGIHIING-NTGRPSGIAYVELSSEEDQAAVLKKDKQNIGGRYIDIfTCSQSELQGALS-----GGSG--DAQFVKL--RGLPYSTTEHQIVAFFQPL-QVIAVQIALNNNG-QASGFGFVQFRTTEDANKALEKSNQ-SLGNRYVEVFRCNRIDMEQAHAHAMQMA 472
                677889999********978888888875.778889*****************************763679999877777.....3222..3568888..59****************9.6889*****9887.**********************995.6777777777776655555544444444 PP

>> TIGR01628  PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.5   0.0    0.0016       1.7     119     146 ..     214     241 ..     120     275 .. 0.86
   2 !   28.1   0.0   2.4e-10   2.5e-07      37     153 ..     327     446 ..     302     493 .. 0.79

  Alignments for each domain:
  == domain 1    score: 5.5 bits;  conditional E-value: 0.0016
  TIGR01628 119 kvatdeeGkSkgYgfvhfedeesAkeAi 146
                 + +  +G++ g ++v f++ee+Ak+A+
  MMETSP1137-20121227|282_1 214 HLLQRADGRASGDAYVIFDTEEAAKQAL 241
                4556677888888888888888888886 PP

  == domain 2    score: 28.1 bits;  conditional E-value: 2.4e-10
  TIGR01628  37 vtrrSLgYaYvNfqnladAerAldtlnyknlkgkpiRlmw.sqRdPslRksG.vgN.ifvK..nLdksidnkaLfdtFskfGnilsckvatdeeGkSkgYgfvhfedeesAkeAieklNgvl 153
                +t r  g aYv  ++++d   A+ +++ +n++g+ i +   sq + +   sG  g   fvK   L+ s +++ +   F+   +++++++a +++G++ g+gfv+f + e A++A+ek N  l
  MMETSP1137-20121227|282_1 327 NTGRPSGIAYVELSSEEDQA-AVLKKDKQNIGGRYIDIFTcSQSELQGALSGgSGDaQFVKlrGLPYSTTEHQIVAFFQPL-QVIAVQIALNNNGQASGFGFVQFRTTEDANKALEKSNQSL 446
                57778899999999988855.566677888999999997525555555555414542366633799999999999999887.7889999999999999999999999999999999999754 PP

>> TIGR01661  ELAV_HUD_SF: ELAV/HuD family splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.0     0.062        64      92     148 ..     184     241 ..     170     251 .. 0.82
   2 ?    1.0   0.0     0.051        53     251     342 ..     271     363 ..     253     371 .. 0.67
   3 !   17.5   0.0   5.2e-07   0.00054      95     155 ..     388     446 ..     380     487 .. 0.86

  Alignments for each domain:
  == domain 1    score: 0.8 bits;  conditional E-value: 0.062
  TIGR01661  92 lyvsGlPktmtqkeleslfspfGkiitsri.lsdnvtdlskGvGfirfdkreeadrai 148
                l + GlP t t +++ ++f+   ++  + + l ++  + + G  ++ fd  e a++a+
  MMETSP1137-20121227|282_1 184 LRMRGLPYTATVDDVVQFFNYPAELSPANVhLLQRADGRASGDAYVIFDTEEAAKQAL 241
                5678999999999999999888888777664677777899999999999999888885 PP

  == domain 2    score: 1.0 bits;  conditional E-value: 0.051
  TIGR01661 251 gavaglaagaqiaasdgagycifvynls....pdtdeavlqlfgpfGavq.svkiirdlttnkckGygfvsmtnydeaalailslnGytlgnrvlqv 342
                g++  ++a a+ a s + g   fv  l       t++a+ ++++p  a    + ii    t +  G ++v ++  +e   a+l  +  ++g+r + +
  MMETSP1137-20121227|282_1 271 GVM--MTAAANGAGSGALGEGYFVVKLRglpwNATEDAIKKFLSPVAAPAgGIHIINGN-TGRPSGIAYVELSS-EEDQAAVLKKDKQNIGGRYIDI 363
                333..344445555455555566666642223478999999999999965157777765.9999*******997.5666778888888888887776 PP

  == domain 3    score: 17.5 bits;  conditional E-value: 5.2e-07
  TIGR01661  95 sGlPktmtqkeleslfspfGkiitsrilsdnvtdlskGvGfirfdkreeadraikalnGtt 155
                 GlP + t +++ ++f+p  ++i+ +i  +n ++++ G Gf++f   e+a++a+ + n + 
  MMETSP1137-20121227|282_1 388 RGLPYSTTEHQIVAFFQPL-QVIAVQIALNN-NGQASGFGFVQFRTTEDANKALEKSNQSL 446
                69****************8.67788887765.78999****************99988765 PP

>> TIGR01642  U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    2.7   0.0    0.0073       7.5     181     344 ..     186     338 ..     116     363 .. 0.57
   2 !   10.9   0.1   2.5e-05     0.025     298     401 ..     384     484 ..     354     494 .. 0.69

  Alignments for each domain:
  == domain 1    score: 2.7 bits;  conditional E-value: 0.0073
  TIGR01642 181 vgniPpeakeeavvdFfndlllavgkdkaedgkavkaviinkdkkFaflEfrtveeatlalaldsiiyenvslkirRphdYiPvpeatpevsqknsdinlkaveklvnsktvldsedklyignLPldlkddqvkeLLesFGdLkaFnliKdlatGlsKGyaFce 344
                + ++P +a+ ++vv+Ffn    +          +++     + +  a++ f t e a +al+ld   +    +      d   + +++    +    + + a    ++s +  ++   + + +LP + ++d +k  L +     +   i + +tG   G a++e
  MMETSP1137-20121227|282_1 186 MRGLPYTATVDDVVQFFNYPAELSPA-----NVHLLQRADGRASGDAYVIFDTEEAAKQALGLDKQKLGSRWV------DLFQSSKGEFYALTSTGGVMMTAAANGAGSGALGEGYFVVKLRGLPWNATEDAIKKFLSPVAAPAGGIHIINGNTGRPSGIAYVE 338
                56777777777777777754322211.....222333333334444444444555555555554444333222......2222333333333344444444443334444444444444455666666666666666655433333333355555555555555 PP

  == domain 2    score: 10.9 bits;  conditional E-value: 2.5e-05
  TIGR01642 298 klyignLPldlkddqvkeLLesFGdLkaFnliKdlatGlsKGyaFceykdssvtdlAiaaLnGiklgdkkLnvkrA.tvgakqatiekensdvlvtllakalsqs 401
                 + + +LP+  +++q++   ++  ++ a ++    ++G+  G++F++++ + +++ A++  n  +lg++ ++v r   ++ +qa  +  + ++++ ++++  +  
  MMETSP1137-20121227|282_1 384 FVKLRGLPYSTTEHQIVAFFQPL-QVIAVQIAL-NNNGQASGFGFVQFRTTEDANKALEKSN-QSLGNRYVEVFRCnRIDMEQAHAHAMQ-MAPMMRQQQMFQMG 484
                44567999999999998876654.344556554.4779999999999999999999988766.467777777755414566666666666.66666666655555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (498 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       148  (0.03608); expected 82.0 (0.02)
Passed bias filter:                      109  (0.0265724); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.44u 0.17s 00:00:00.61 Elapsed: 00:00:00.53
# Mc/sec: 1240.20
//
Query:       MMETSP1137-20121227|284_1  [L=293]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (293 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        91  (0.0221843); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.16s 00:00:00.38 Elapsed: 00:00:00.40
# Mc/sec: 966.82
//
Query:       MMETSP1137-20121227|285_1  [L=667]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0053   14.1   0.6       0.01   13.1   0.4    1.5  1  TIGR01840 esterase_phb: esterase, PHB depolymerase family
  ------ inclusion threshold ------
      0.016   12.6   0.0      0.026   11.9   0.0    1.2  1  TIGR02821 fghA_ester_D: S-formylglutathione hydrolase
      0.027   11.9   0.1      0.053   11.0   0.1    1.4  1  TIGR01738 bioH: putative pimeloyl-BioC--CoA transferase BioH


Domain annotation for each model (and alignments):
>> TIGR01840  esterase_phb: esterase, PHB depolymerase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.1   0.4   7.7e-06      0.01      86     155 ..     429     497 ..     400     514 .. 0.74

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 7.7e-06
  TIGR01840  86 vkanysIDpnrvyvtGLSaGggetaVllatypdvfAgaAsnaglpygsasssisalpkmsstaktakelg 155
                  ++ys+D+ r+y+ G S Gg     ++a  p +   aA +   +    s  +++ + +    + a++ +
  MMETSP1137-20121227|285_1 429 ASQTYSVDTSRIYLFGQSMGGLACLHMAAHLPSYLRPAAIIPVSAAAACSRGVELHGXGD-ISAAAAAAA 497
                3459******************************98888777666666666777766654.344444444 PP

>> TIGR02821  fghA_ester_D: S-formylglutathione hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   1.9e-05     0.026     122     179 ..     423     478 ..     414     484 .. 0.83

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 1.9e-05
  TIGR02821 122 veelpalvaaefPldaerqgitGhsmGGhGalvialknPdlfksvsafaPivaPsrsp 179
                v  l +l+ +++ +d++r  ++G smGG   l +a + P   +  +a  P+ a + ++
  MMETSP1137-20121227|285_1 423 VAAL-NLASQTYSVDTSRIYLFGQSMGGLACLHMAAHLPSYLRP-AAIIPVSAAAACS 478
                5555.478899****************************97775.6778888777765 PP

>> TIGR01738  bioH: putative pimeloyl-BioC--CoA transferase BioH
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.1   3.8e-05     0.053      67      96 ..     440     469 ..     415     485 .. 0.71

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 3.8e-05
  TIGR01738  67 aiwlGWsLGGLvalhlalthpdkvrsLvlv 96 
                  + G s+GGL  lh+a+++p + r   ++
  MMETSP1137-20121227|285_1 440 IYLFGQSMGGLACLHMAAHLPSYLRPAAII 469
                4567******************99854433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (667 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       107  (0.0260848); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.47u 0.16s 00:00:00.63 Elapsed: 00:00:00.48
# Mc/sec: 1834.10
//
Query:       MMETSP1137-20121227|286_1  [L=213]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (213 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        54  (0.0131643); expected 82.0 (0.02)
Passed bias filter:                       36  (0.00877621); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.17s 00:00:00.38 Elapsed: 00:00:00.30
# Mc/sec: 937.12
//
Query:       MMETSP1137-20121227|289_1  [L=84]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (84 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        61  (0.0148708); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.13s 00:00:00.26 Elapsed: 00:00:00.27
# Mc/sec: 410.63
//
Query:       MMETSP1137-20121227|290_1  [L=216]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (216 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.11s 00:00:00.32 Elapsed: 00:00:00.51
# Mc/sec: 559.01
//
Query:       MMETSP1137-20121227|291_1  [L=343]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (343 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        74  (0.01804); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.12s 00:00:00.37 Elapsed: 00:00:00.37
# Mc/sec: 1223.57
//
Query:       MMETSP1137-20121227|292_1  [L=95]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (95 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        73  (0.0177962); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.17s 00:00:00.32 Elapsed: 00:00:00.71
# Mc/sec: 176.61
//
Query:       MMETSP1137-20121227|294_1  [L=223]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (223 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        92  (0.0224281); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.11s 00:00:00.31 Elapsed: 00:00:00.72
# Mc/sec: 408.80
//
Query:       MMETSP1137-20121227|295_1  [L=267]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (267 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       101  (0.0246221); expected 82.0 (0.02)
Passed bias filter:                       97  (0.023647); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.14s 00:00:00.38 Elapsed: 00:00:01.76
# Mc/sec: 200.23
//
Query:       MMETSP1137-20121227|296_1  [L=124]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (124 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        76  (0.0185275); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.12s 00:00:00.27 Elapsed: 00:00:00.28
# Mc/sec: 584.52
//
Query:       MMETSP1137-20121227|298_1  [L=464]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.9e-10   35.6   1.1    6.1e-05   19.9   0.2    2.5  2  TIGR02928 TIGR02928: orc1/cdc6 family replication initiation protein
    6.5e-08   30.0   5.1    3.5e-05   21.0   0.5    2.5  2  TIGR02397 dnaX_nterm: DNA polymerase III, subunit gamma and tau
      8e-07   26.0   0.1    1.2e-06   25.5   0.1    1.3  1  TIGR00665 DnaB: replicative DNA helicase
    3.5e-06   23.3   0.8    1.2e-05   21.5   0.1    2.0  2  TIGR02639 ClpA: ATP-dependent Clp protease ATP-binding subunit ClpA
    2.8e-05   21.1   6.3     0.0049   13.8   0.2    3.2  2  TIGR00635 ruvB: Holliday junction DNA helicase RuvB
    0.00053   17.9   1.4     0.0028   15.5   0.1    2.7  3  TIGR02173 cyt_kin_arch: putative cytidylate kinase
    0.00059   16.2   1.2       0.21    7.7   0.1    2.3  2  TIGR00763 lon: ATP-dependent protease La
    0.00066   16.6   0.5      0.001   16.0   0.3    1.3  1  TIGR03600 phage_DnaB: phage replicative helicase, DnaB family
     0.0012   15.3   0.3      0.083    9.3   0.1    2.6  3  TIGR00764 lon_rel: putative ATP-dependent protease
     0.0027   14.2   2.8     0.0054   13.2   0.1    2.3  3  TIGR02902 spore_lonB: ATP-dependent protease LonB
     0.0044   13.5   0.7     0.0087   12.5   0.2    1.6  2  TIGR02868 CydC: thiol reductant ABC exporter, CydC subunit
     0.0073   14.0   0.1      0.018   12.8   0.1    1.7  1  TIGR00150 HI0065_YjeE: ATPase, YjeE family
  ------ inclusion threshold ------
      0.039   11.9   0.1       0.13   10.2   0.0    1.9  2  TIGR03511 GldH_lipo: gliding motility-associated lipoprotein GldH


Domain annotation for each model (and alignments):
>> TIGR02928  TIGR02928: orc1/cdc6 family replication initiation protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.0   1.1e-05    0.0034      30      72 ..      54      97 ..      29     132 .. 0.71
   2 !   19.9   0.2   1.9e-07   6.1e-05     198     274 ..     357     429 ..     352     446 .. 0.88

  Alignments for each domain:
  == domain 1    score: 14.1 bits;  conditional E-value: 1.1e-05
  TIGR02928 30 alkpilrgsrp.snvliyGktGtGKtavtkkvlkeleeaaeekd 72
               +l+ i +g+ + + +li G++GtGKta+++ + ++l +++  + 
  MMETSP1137-20121227|298_1 54 ILQMIKDGHIAgRAILIAGQPGTGKTAIAMGMSQALGTDTPFTT 97
               555666665442679*****************999988876554 PP

  == domain 2    score: 19.9 bits;  conditional E-value: 1.9e-07
  TIGR02928 198 ppYdaeeLrdILeeRaekafkdgvlddeviplvaalaaqehGdaRkAidlLreageiAeeegsekvteehvekAqek 274
                +pY+++e+r+IL+ R e   +d  ++d+++ l  ++  ++  ++R Ai ++  a+ ++++++  +v +e++++ ++ 
  MMETSP1137-20121227|298_1 357 TPYTEKEIRQILHIRCE--EEDVEMSDDALTLLTKIGVET--SLRYAIHMIIAAALVCQKRKGVEVEVEDIKRVYSL 429
                8***************9..456669*************99..9****************************987765 PP

>> TIGR02397  dnaX_nterm: DNA polymerase III, subunit gamma and tau
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.1   0.2   0.00024     0.075      24      61 ..      52      90 ..      38     102 .. 0.76
   2 !   21.0   0.5   1.1e-07   3.5e-05     121     242 ..     293     430 ..     291     457 .. 0.80

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 0.00024
  TIGR02397 24 ktLknaikknkia.hayLfsGprGvGKTsiArilAkalN 61
                ++ + ik++ ia  a L +G+ G+GKT+iA  +++al 
  MMETSP1137-20121227|298_1 52 GIILQMIKDGHIAgRAILIAGQPGTGKTAIAMGMSQALG 90
               4577889999997479***************99998885 PP

  == domain 2    score: 21.0 bits;  conditional E-value: 1.1e-07
  TIGR02397 121 YiiDEvhmLsksafnaLLKtlEePpehvvFilaT.........te...lekipetilSRcqrfdfkkikeekiverlkkilkkekikveeeaLeliarka.eGslRDalslldqlislskg....kitlekveellglv 242
                  iDEvhmL  + f+ L + lE     v  + aT         t+   ++ ip  +l R    +    +e++i + l+  +++e+++++++aL+l+ + + e slR a+ ++  +++++++    ++++e+++++  l 
  MMETSP1137-20121227|298_1 293 LFIDEVHMLDIECFSYLNRALESDLAPVLVV-ATnrgitrirgTNyksPHGIPIDLLDRLLIISTTPYTEKEIRQILHIRCEEEDVEMSDDALTLLTKIGvETSLRYAIHMIIAAALVCQKrkgvEVEVEDIKRVYSLF 430
                579********************98887654.44233323333442226789999*******************************************97589*****9998888777776566778999999887764 PP

>> TIGR00665  DnaB: replicative DNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.5   0.1   3.7e-09   1.2e-06     190     247 ..      60     121 ..      51     193 .. 0.81

  Alignments for each domain:
  == domain 1    score: 25.5 bits;  conditional E-value: 3.7e-09
  TIGR00665 190 sGlqrsdLiivAgRPsmGKtafalniaeniak....keklpvavFSLEmskeqLvqrllase 247
                 G   +  i++Ag P+ GKta+a+ + + + +    ++ ++  +FSLEm+k++ +++ +  +
  MMETSP1137-20121227|298_1  60 DGHIAGRAILIAGQPGTGKTAIAMGMSQALGTdtpfTTIAASEIFSLEMNKTEALTQAFRRS 121
                566677789********************99955544455678*******998776665555 PP

>> TIGR02639  ClpA: ATP-dependent Clp protease ATP-binding subunit ClpA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.5   0.1   3.9e-08   1.2e-05     210     275 ..      69     135 ..      66     158 .. 0.86
   2 ?   -0.8   0.0      0.22        68      47     287 ..     259     299 ..     229     313 .. 0.60

  Alignments for each domain:
  == domain 1    score: 21.5 bits;  conditional E-value: 3.9e-08
  TIGR02639 210 llvGepGvGktaiveGLakriaedkvPealknakiysLdlgsllaGtk.yrGdfeerlkevveeiek 275
                l  G+pG Gktai+ G+++++ +d   +++  ++i+sL++ +  a t+ +r     r+ke  e ie 
  MMETSP1137-20121227|298_1  69 LIAGQPGTGKTAIAMGMSQALGTDTPFTTIAASEIFSLEMNKTEALTQaFRRSIGVRIKEETEIIEG 135
                5679*********************99****************9998769*9999999986655554 PP

  == domain 2    score: -0.8 bits;  conditional E-value: 0.22
  TIGR02639  47 gadvellkkklekyleeelekleeeeeaepeqtvglqrvlerallhvksaekkevdigdllvalleeeesyasyllkkqgisrldilelisheiskdekkeeeeeeekeeeekeekkekealekytvdltekakkgkidPliGredelertiqvLcrrkknnPllvGepGvGktaiveGLakriaedkvPealknakiysLdlgsllaGtkyrGdfeerlkevveeiekeedailfiDeih 287
                ++d   +k+++++ +++++ + +ee +ae++                                                                                                                                                                                                          +lfiDe+h
  MMETSP1137-20121227|298_1 259 AGDTGEIKSEVREQIDQKVAEWREEGKAEIVPG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------VLFIDEVH 299
                444444444444444444444444444443333........................................................................................................................................................................................................44444444 PP

>> TIGR00635  ruvB: Holliday junction DNA helicase RuvB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.2   1.6e-05    0.0049       6      60 ..      41      95 ..      37     116 .. 0.90
   2 !    6.3   1.0    0.0029       0.9      84     199 ..     292     400 ..     288     424 .. 0.66

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 1.6e-05
  TIGR00635  6 fiGqekvkeklqlfikaakkrkealdhvllyGPPGlGkttlakiiakelgvklki 60
                +Gq + ++   ++++  k+ + a   +l++G PG Gkt++a+ +++ lg++   
  MMETSP1137-20121227|298_1 41 MVGQANARKAAGIILQMIKDGHIAGRAILIAGQPGTGKTAIAMGMSQALGTDTPF 95
               69*******************************************9999987654 PP

  == domain 2    score: 6.3 bits;  conditional E-value: 0.0029
  TIGR00635  84 vlfiDeihrlskaveellypamedfkldivigkgpaaksvrldlapftlvGattraGkltsPLrdrfgiverlefYseeeleeivkrsaklleleieeeaaleiarrsrgtp.rian 199
                vlfiDe+h l+ +   +l  a+e     +++   ++  + r+  +++           +   L dr  i++    Y+e+e+++i+++  +  ++e++++a + +++   +t  r a+
  MMETSP1137-20121227|298_1 292 VLFIDEVHMLDIECFSYLNRALESDLAPVLV-VATNRGITRIRGTNYK-----SPH-GIPIDLLDRLLIIST-TPYTEKEIRQILHIRCEEEDVEMSDDALTLLTKIGVETSlRYAI 400
                8899999999988888888888864333333.2333333344333332.....222.344557788877665.45788888888888888888888888888888876665325555 PP

>> TIGR02173  cyt_kin_arch: putative cytidylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.1   8.9e-06    0.0028       3      69 ..      68     130 ..      66     144 .. 0.70
   2 ?   -0.6   0.0      0.78   2.5e+02      58      81 ..     173     195 ..     153     201 .. 0.69
   3 ?   -2.0   0.0       2.2   6.9e+02      52      71 ..     264     283 ..     248     293 .. 0.69

  Alignments for each domain:
  == domain 1    score: 15.5 bits;  conditional E-value: 8.9e-06
  TIGR02173   3 ivisGpPGsGkttvakilaeklslklisaGkirelaekkgldlaeskkaeeekeiDkkiDrkikeia 69 
                i i+G+PG+Gkt++a  +++ l+           +a+++ ++l+ +k  +  +   ++i  +ike +
  MMETSP1137-20121227|298_1  68 ILIAGQPGTGKTAIAMGMSQALGTD----TPFTTIAASEIFSLEMNKTEALTQAFRRSIGVRIKEET 130
                89*******************9987....33455666666666555555556666666666666554 PP

  == domain 2    score: -0.6 bits;  conditional E-value: 0.78
  TIGR02173  58 DkkiDrkikeiaekeknvvlesrl 81 
                 k+iD+ +ke a ++++v+   + 
  MMETSP1137-20121227|298_1 173 QKMIDSLTKEKA-QAGDVITIDKA 195
                589999999999.78888865555 PP

  == domain 3    score: -2.0 bits;  conditional E-value: 2.2
  TIGR02173  52 eeekeiDkkiDrkikeiaek 71 
                e + e+ ++iD+k+ e  e+
  MMETSP1137-20121227|298_1 264 EIKSEVREQIDQKVAEWREE 283
                55677778888888776654 PP

>> TIGR00763  lon: ATP-dependent protease La
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.7   0.1   0.00068      0.21     348     379 ..      60      91 ..      53      99 .. 0.87
   2 !    7.3   0.1   0.00096       0.3     481     535 ..     342     386 ..     307     457 .. 0.76

  Alignments for each domain:
  == domain 1    score: 7.7 bits;  conditional E-value: 0.00068
  TIGR00763 348 rkklkgkilclvGPPGVGKtSlaksiAkalnr 379
                 +++ g+ + + G PG GKt++a  + +al++
  MMETSP1137-20121227|298_1  60 DGHIAGRAILIAGQPGTGKTAIAMGMSQALGT 91 
                56788999*******************99975 PP

  == domain 2    score: 7.3 bits;  conditional E-value: 0.00096
  TIGR00763 481 tiPepLldRmEvielsgYveeeKleiakkyLipkaleeaglkkeeveisdealke 535
                 iP  LldR+ +i+ + Y+e+e  +i +             ++e+ve+sd+al+ 
  MMETSP1137-20121227|298_1 342 GIPIDLLDRLLIISTTPYTEKEIRQILHI----------RCEEEDVEMSDDALTL 386
                59********************8888653..........2334445555555544 PP

>> TIGR03600  phage_DnaB: phage replicative helicase, DnaB family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.3   3.3e-06     0.001     189     251 ..      60     126 ..      43     197 .. 0.74

  Alignments for each domain:
  == domain 1    score: 16.0 bits;  conditional E-value: 3.3e-06
  TIGR03600 189 nGLvkgdlivigaRPsmGKTtlalniaenvalke....gkavlvfslemsaeqlaerllasksgiet 251
                 G   g  i+i++ P++GKT++a+++ + ++         a  +fslem + + + +   +  g++ 
  MMETSP1137-20121227|298_1  60 DGHIAGRAILIAGQPGTGKTAIAMGMSQALGTDTpfttIAASEIFSLEMNKTEALTQAFRRSIGVRI 126
                48888999*******************99985431111456679*******9999888888877754 PP

>> TIGR00764  lon_rel: putative ATP-dependent protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.3   0.1   0.00026     0.083      27      64 ..      55      92 ..      31     130 .. 0.73
   2 ?   -2.3   0.0       0.8   2.5e+02     346     388 ..     151     193 ..     102     201 .. 0.73
   3 ?    3.1   0.0     0.019         6     219     243 ..     291     315 ..     284     328 .. 0.87

  Alignments for each domain:
  == domain 1    score: 9.3 bits;  conditional E-value: 0.00026
  TIGR00764 27 vevikkaakqkrnvlliGePGvGksmlakamaellpke 64
               +++ik      r +l+ G+PG+Gk+ +a  m++ l ++
  MMETSP1137-20121227|298_1 55 LQMIKDGHIAGRAILIAGQPGTGKTAIAMGMSQALGTD 92
               345666666789*******************9999876 PP

  == domain 2    score: -2.3 bits;  conditional E-value: 0.8
  TIGR00764 346 raGrkdkltlrlrelggvvraagdiavkkgkkyvtredvleal 388
                  G+ +kltl+  e+  v    + +  +  k+  ++ dv+ + 
  MMETSP1137-20121227|298_1 151 AGGKTGKLTLKTTEMETVYDLGQKMIDSLTKEKAQAGDVITID 193
                2367889999999998888877777777777777777777655 PP

  == domain 3    score: 3.1 bits;  conditional E-value: 0.019
  TIGR00764 219 Gvlyideiatlslkvqqslltalqe 243
                Gvl+ide++ l ++   +l  al  
  MMETSP1137-20121227|298_1 291 GVLFIDEVHMLDIECFSYLNRALES 315
                9**************9999998875 PP

>> TIGR02902  spore_lonB: ATP-dependent protease LonB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.0      0.13        40      88     104 ..      67      83 ..      36     104 .. 0.80
   2 ?   -3.3   0.0       1.8   5.6e+02     177     188 ..     291     302 ..     287     314 .. 0.80
   3 !   13.2   0.1   1.7e-05    0.0054     235     328 ..     331     426 ..     327     441 .. 0.86

  Alignments for each domain:
  == domain 1    score: 0.4 bits;  conditional E-value: 0.13
  TIGR02902  88 hviiyGppGvGktaaar 104
                 ++i G pG Gkta a 
  MMETSP1137-20121227|298_1  67 AILIAGQPGTGKTAIAM 83 
                57899*********884 PP

  == domain 2    score: -3.3 bits;  conditional E-value: 1.8
  TIGR02902 177 GvlfideiGelh 188
                Gvlfide+  l+
  MMETSP1137-20121227|298_1 291 GVLFIDEVHMLD 302
                9******98765 PP

  == domain 3    score: 13.2 bits;  conditional E-value: 1.7e-05
  TIGR02902 235 rliGattrkpeeippalrsrcveiffrelekeeikeiakkaaekiglslekealeliakya..snGreavnlvqlaaGlalnenrkkilaediewv 328
                r+ G+  + p+ ip  l  r + i   + +++ei++i +   e  +++++++al l++k    ++ r a+ ++  aa +  + +  +++ edi+ v
  MMETSP1137-20121227|298_1 331 RIRGTNYKSPHGIPIDLLDRLLIISTTPYTEKEIRQILHIRCEEEDVEMSDDALTLLTKIGveTSLRYAIHMIIAAALVCQKRKGVEVEVEDIKRV 426
                6778899***************************************************9762267799***9977666655555667888888765 PP

>> TIGR02868  CydC: thiol reductant ABC exporter, CydC subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.5   0.2   2.8e-05    0.0087     350     408 ..      54     112 ..      29     121 .. 0.82
   2 ?   -1.1   0.0      0.37   1.2e+02     288     371 ..     112     197 ..     107     198 .. 0.58

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 2.8e-05
  TIGR02868 350 vlkgvsldlepGervavvGasGaGKstLlallaglldplkGevtldgvsvaslsesevr 408
                +l+ ++    +G+ + + G+ G+GK+++++ +  +l ++++  t+   ++ sl+ ++  
  MMETSP1137-20121227|298_1  54 ILQMIKDGHIAGRAILIAGQPGTGKTAIAMGMSQALGTDTPFTTIAASEIFSLEMNKTE 112
                45555555668******************************999999999888776655 PP

  == domain 2    score: -1.1 bits;  conditional E-value: 0.37
  TIGR02868 288 aalpaAaqqltrvr..aaaeRie.evldakvevaeasapaaeaaasekptlelrdlsvsypgaeevlkgv.sldlepGervavvGasG 371
                 al++A+++   vr  +  e ie ev + +   + ++a aa+  +++k tl++ ++++ y+ +++ ++ + + ++++G  +++  a+G
  MMETSP1137-20121227|298_1 112 EALTQAFRRSIGVRikEETEIIEgEVVEIE--IDRPAAGAAAGGKTGKLTLKTTEMETVYDLGQKMIDSLtKEKAQAGDVITIDKATG 197
                566666655443330023333332333333..3333333444444488999**********999966655156788899888877776 PP

>> TIGR00150  HI0065_YjeE: ATPase, YjeE family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.8   0.1   5.7e-05     0.018      22      52 ..      65      95 ..      47     127 .. 0.84

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 5.7e-05
  TIGR00150 22 atvvlLkGdlGaGKttlvkgllkglGiqgev 52
               +  +l+ G+ G+GKt++  g+ ++lG ++ +
  MMETSP1137-20121227|298_1 65 GRAILIAGQPGTGKTAIAMGMSQALGTDTPF 95
               467999********************98655 PP

>> TIGR03511  GldH_lipo: gliding motility-associated lipoprotein GldH
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0         4   1.3e+03     137     152 ..     378     393 ..     376     395 .. 0.90
   2 ?   10.2   0.0   0.00042      0.13      46      87 ..     417     460 ..     409     464 .] 0.86

  Alignments for each domain:
  == domain 1    score: -2.7 bits;  conditional E-value: 4
  TIGR03511 137 emrdetLsGiedvGir 152
                em d+ L+ ++++G++
  MMETSP1137-20121227|298_1 378 EMSDDALTLLTKIGVE 393
                799***********97 PP

  == domain 2    score: 10.2 bits;  conditional E-value: 0.00042
  TIGR03511  46 eveieDitasyklsleiRnnneY..pYrnLylliaeesedstli 87 
                eve+eDi++ y+l+++++ + ++  +Y+n +++   +  d  + 
  MMETSP1137-20121227|298_1 417 EVEVEDIKRVYSLFVDVKRSTQFlvEYQNEFMFSEVQAADADMT 460
                799****************9998779****99998888888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (464 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       303  (0.0738664); expected 82.0 (0.02)
Passed bias filter:                      150  (0.0365675); expected 82.0 (0.02)
Passed Vit filter:                        36  (0.00877621); expected 4.1 (0.001)
Passed Fwd filter:                        13  (0.00316919); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.54u 0.17s 00:00:00.71 Elapsed: 00:00:00.77
# Mc/sec: 795.36
//
Query:       MMETSP1137-20121227|299_1  [L=70]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        37  (0.00901999); expected 82.0 (0.02)
Passed bias filter:                       34  (0.00828864); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.62
# Mc/sec: 149.02
//
Query:       MMETSP1137-20121227|300_1  [L=64]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        42  (0.0102389); expected 82.0 (0.02)
Passed bias filter:                       41  (0.00999512); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.14s 00:00:00.27 Elapsed: 00:00:00.28
# Mc/sec: 301.69
//
Query:       MMETSP1137-20121227|301_1  [L=472]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (472 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        83  (0.020234); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.12s 00:00:00.43 Elapsed: 00:00:00.51
# Mc/sec: 1221.55
//
Query:       MMETSP1137-20121227|302_1  [L=362]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (362 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        76  (0.0185275); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.16s 00:00:00.42 Elapsed: 00:00:00.47
# Mc/sec: 1016.60
//
Query:       MMETSP1137-20121227|303_1  [L=264]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (264 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       361  (0.0880059); expected 82.0 (0.02)
Passed bias filter:                      129  (0.0314481); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.17s 00:00:00.41 Elapsed: 00:00:00.37
# Mc/sec: 941.76
//
Query:       MMETSP1137-20121227|304_1  [L=293]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.6e-19   68.2   0.0    2.3e-19   67.7   0.0    1.3  1  TIGR01575 rimI: ribosomal-protein-alanine acetyltransferase
    2.7e-09   34.6   0.0    1.8e-06   25.4   0.0    1.9  2  TIGR03448 mycothiol_MshD: mycothiol synthase


Domain annotation for each model (and alignments):
>> TIGR01575  rimI: ribosomal-protein-alanine acetyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.7   0.0   1.1e-22   2.3e-19       3     132 .]     128     259 ..     126     259 .. 0.89

  Alignments for each domain:
  == domain 1    score: 67.7 bits;  conditional E-value: 1.1e-22
  TIGR01575   3 kevleiekeafavspwteaafaeelasekaeyllaeeggkvvGyivvqivldeaeilniavkpeyqgqGiGraLlkelikeakerg...vkeifLEVResNvaAqaLYkklgfkeialrknYYkdseedAlvM 132
                 ++ +ie+eaf    +    +++++  +++ +l+ae g+ ++Gy++v+   +++ i+++av   +++qGiG+aLl+  i+ +++      +ei L V    v A ++Y+++gf++ ++  nYY+d + dAl+M
  MMETSP1137-20121227|304_1 128 RALHAIEQEAFPPCERLGLGLENHVLLRTNSLLIAEVGHSMAGYLIVSHFANQGLITKLAVGARFRRQGIGSALLQSGIDALCSCSrrmPHEILLHVDPQRVGAVRMYERTGFRKLERLTNYYSDRR-DALLM 259
                5678899999994444445678888899*************************************************999877644223689**********************************9.****9 PP

>> TIGR03448  mycothiol_MshD: mycothiol synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.0   1.7e-06    0.0034      36      96 ..     146     205 ..     127     214 .. 0.82
   2 !   25.4   0.0   8.6e-10   1.8e-06     232     294 .]     184     249 ..     159     249 .. 0.84

  Alignments for each domain:
  == domain 1    score: 14.5 bits;  conditional E-value: 1.7e-06
  TIGR03448  36 relreagadrtehllvsdsdkaivGyaalseardadsemaElvvhPaaRrrGigkalvral 96 
                 +l+++   rt++ll+++  ++++Gy+ +s+   +++  + l+v  ++Rr+Gig+al++  
  MMETSP1137-20121227|304_1 146 LGLENHVLLRTNSLLIAEVGHSMAGYLIVSH-FANQGLITKLAVGARFRRQGIGSALLQSG 205
                5565566678899999999999*****9877.578999*******************9875 PP

  == domain 2    score: 25.4 bits;  conditional E-value: 8.6e-10
  TIGR03448 232 YvvgvdpaaqgrGLGkaLtliGlkhl...eerglravlLYveadneaAvrtYekLgFtvaevdvaY 294
                  ++v    +++G+G+aL + G+  l   ++r  +++lL v+   + Avr+Ye+ gF + e+ + Y
  MMETSP1137-20121227|304_1 184 TKLAVGARFRRQGIGSALLQSGIDALcscSRRMPHEILLHVDPQRVGAVRMYERTGFRKLERLTNY 249
                55789999***************9993334568899**********************99987766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (293 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.23u 0.15s 00:00:00.38 Elapsed: 00:00:00.43
# Mc/sec: 899.37
//
Query:       MMETSP1137-20121227|305_1  [L=168]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (168 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       143  (0.034861); expected 82.0 (0.02)
Passed bias filter:                      109  (0.0265724); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.16s 00:00:00.32 Elapsed: 00:00:00.32
# Mc/sec: 692.94
//
Query:       MMETSP1137-20121227|306_1  [L=454]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (454 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        77  (0.0187713); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.21s 00:00:00.48 Elapsed: 00:00:01.10
# Mc/sec: 544.76
//
Query:       MMETSP1137-20121227|307_1  [L=478]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (478 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       221  (0.0538762); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.26s 00:00:00.52 Elapsed: 00:00:00.49
# Mc/sec: 1287.57
//
Query:       MMETSP1137-20121227|308_1  [L=233]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.16    9.0   7.1      0.016   12.3   1.4    1.7  2  TIGR00599 rad18: DNA repair protein rad18


Domain annotation for each model (and alignments):
>> TIGR00599  rad18: DNA repair protein rad18
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.2     0.086   3.5e+02     183     190 ..     182     189 ..     176     198 .. 0.74
   2 ?   12.3   1.4   3.9e-06     0.016      43      69 ..     201     227 ..     195     232 .. 0.92

  Alignments for each domain:
  == domain 1    score: -2.0 bits;  conditional E-value: 0.086
  TIGR00599 183 qCPiCsql 190
                qCPiC + 
  MMETSP1137-20121227|308_1 182 QCPICLTE 189
                67777654 PP

  == domain 2    score: 12.3 bits;  conditional E-value: 3.9e-06
  TIGR00599  43 sCsHtFCslCiRrcLseepkCPlCrae 69 
                +C+H F   C+ ++L+ +  CP+Cr+ 
  MMETSP1137-20121227|308_1 201 PCEHYFHEECLLQWLRAHNTCPVCRFA 227
                8************************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (233 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        68  (0.0165773); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.18u 0.17s 00:00:00.35 Elapsed: 00:00:00.35
# Mc/sec: 878.67
//
Query:       MMETSP1137-20121227|310_1  [L=125]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (125 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       187  (0.0455875); expected 82.0 (0.02)
Passed bias filter:                      144  (0.0351048); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.15s 00:00:00.29 Elapsed: 00:00:00.41
# Mc/sec: 402.41
//
Query:       MMETSP1137-20121227|311_1  [L=149]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0025   14.6   0.0     0.0029   14.4   0.0    1.0  1  TIGR01143 murF: UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase


Domain annotation for each model (and alignments):
>> TIGR01143  murF: UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.0   7.2e-07    0.0029     159     258 ..      12     117 ..       3     132 .. 0.83

  Alignments for each domain:
  == domain 1    score: 14.4 bits;  conditional E-value: 7.2e-07
  TIGR01143 159 geaHleefgslegiaeaKseilqalkengiavinaddaalaklakelk........ekavlsfgled.adveaedvelkelgasftleakdeeievelpllgrhnveNa 258
                 +a +++f+s+ +++ +++ i +a++e gi + ++d+a la + ++ +        +++++++g ++ ++++a+d+el +  ++f+l+a d  +++ +p    +++ N+
  MMETSP1137-20121227|311_1  12 CTATANAFSSVADVVAEQQAITAAFNEFGITFFQQDAATLAPFFADDSravifdkvNQETFVYGPGEfEQFAAKDFELMPTLEGFSLVALDVYVNLDVP---VRQAFNV 117
                5677789*******************************99987655444667887667799****999*********************9976666666...4445554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (149 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       122  (0.0297416); expected 82.0 (0.02)
Passed bias filter:                      105  (0.0255973); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.18u 0.14s 00:00:00.32 Elapsed: 00:00:00.31
# Mc/sec: 634.40
//
Query:       MMETSP1137-20121227|312_1  [L=428]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0029   15.4   0.3     0.0065   14.3   0.2    1.6  1  TIGR03891 thiopep_ocin: thiopeptide-type bacteriocin biosynthesis domain


Domain annotation for each model (and alignments):
>> TIGR03891  thiopep_ocin: thiopeptide-type bacteriocin biosynthesis domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.2   1.6e-06    0.0065     101     211 ..     116     229 ..     113     250 .. 0.65

  Alignments for each domain:
  == domain 1    score: 14.3 bits;  conditional E-value: 1.6e-06
  TIGR03891 101 aielaEelFaaDSravlall.skedseldrlllallsivsllrafgldleeqlellkrvaeqrkkekplkkq.lrkklralartlnelealaesks.aepllkllaersealka 211
                a ++++  F+ DS +++++  +  +s++  ++   ++++ +l+++++ + ++++ll++    + +ek++++   +k++++  r +++ +a+a++++ a +  ++ ++  +++++
  MMETSP1137-20121227|312_1 116 AAAACHPTFSSDSFLAASVDqQPPQSSELLEAAGEVACMLYLDSYNGGNSKAMRLLSDYLLEEWREKKVQHRsRPKSAPTPVRLCTDAAANAAANAaAREETAAEQSGAARFTS 229
                6689**************85444444555555566899999*************999888888877555543044555555556666666665555444444444444444544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (428 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       144  (0.0351048); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.32u 0.16s 00:00:00.48 Elapsed: 00:00:00.33
# Mc/sec: 1711.86
//
Query:       MMETSP1137-20121227|314_1  [L=205]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (205 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        68  (0.0165773); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.17s 00:00:00.35 Elapsed: 00:00:00.35
# Mc/sec: 773.08
//
Query:       MMETSP1137-20121227|315_1  [L=396]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.8e-25   86.0   2.4    1.4e-24   84.7   1.7    1.6  1  TIGR03151 enACPred_II: putative enoyl-[acyl-carrier-protein] reductase II
    4.3e-07   27.0   0.5     0.0037   14.0   0.1    2.3  2  TIGR01302 IMP_dehydrog: inosine-5'-monophosphate dehydrogenase
    0.00014   18.6   1.9      0.076    9.6   0.4    2.2  2  TIGR02814 pfaD_fam: PfaD family protein
     0.0026   14.9   9.0     0.0082   13.3   2.8    2.8  4  TIGR01304 IMP_DH_rel_2: IMP dehydrogenase family protein
  ------ inclusion threshold ------
      0.033   10.9   1.1       0.04   10.7   0.0    1.6  2  TIGR02151 IPP_isom_2: isopentenyl-diphosphate delta-isomerase, type 2


Domain annotation for each model (and alignments):
>> TIGR03151  enACPred_II: putative enoyl-[acyl-carrier-protein] reductase II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.7   1.7   1.7e-27   1.4e-24       9     302 ..      51     379 ..      44     384 .. 0.76

  Alignments for each domain:
  == domain 1    score: 84.7 bits;  conditional E-value: 1.7e-27
  TIGR03151   9 eieyPilqGgmawvataelaaavseaGGlGiigaGna.pkdvvkkeikkvkeltdkPfGvnilll..s...pfvdelvdlvieekvpvvttGa...GnPgkyierlkeagvkviPvvasvalakrleklGadaviaeGmeaGGh.....iGelttlalv..pqvvdav.....siPviaaGGiadgrGlaaalalGaeavqlGtrflvakesevhpnykekvlkakdrdtvvtg........rk...vGhp...vrvlknkltrkyeelekegadl.eeleklgaGalrkavveGdveeGsvmaGqiaglikeikpakeiieeilkeake 302
                + + Pi+   ma v+ + laaa  +aG lG igaG+   +  +++++   +        +ni ++  s   +  d++++ + e +   v + a    + g  ++  +  g  v+  + s   a+    +G+d v+++G eaGGh      G+ +t++l   +  +d v     ++ v+aaGGi dgrGlaaalalG ++  +Gtr+ +++e+  ++++k ++  a   d + t+         +     hp   v +l n  tr++e    e ad+  + +   a + rka+ eG  ++ +v+aG   g i+ i++a++++     ea +
  MMETSP1137-20121227|315_1  51 GCRIPIMGAPMAGVSGGLLAAATCRAGALGFIGAGHLsDPSALREQVGLFRANVPDGTPLNIGFIgySsmkDGLDKVAEAIKEHRPMAVQFFApaiVEGGENVKLAQSLGSLVVAQIGSEHAAREALLAGVDCVVVQGREAGGHglraeFGR-STFPLAaaRLATDPVrgwlqQVTVLAAGGIVDGRGLAAALALGCDGAVFGTRLWATHEAVGKEAFKYALTTACTDDVIRTTvfdqiqnsYSsfpWPHPfdsVGALDNLTTREWEGRAGELADVlLQQDAAVAREYRKALDEGIASRAAVLAGEGVGCIDTIESAEAVVRRAEGEAIA 379
                56789*999**************************96257899****9999887655555554432241114567778888888766666655112578999999999************************************54333343.56655411445666644444699***********************************9999999988877766554433311111111111113466555788999999999998888877615677788899********************************99876666555 PP

>> TIGR01302  IMP_dehydrog: inosine-5'-monophosphate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.8   0.0   4.1e-05     0.034      31      63 ..      50      82 ..      38      92 .. 0.88
   2 !   14.0   0.1   4.5e-06    0.0037     327     372 ..     223     268 ..     212     271 .. 0.94

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 4.1e-05
  TIGR01302 31 iklkiPvlssamDtvtesklaialAreGgiGvi 63
                  +iP++ ++m  v++  la+a  r+G++G+i
  MMETSP1137-20121227|315_1 50 FGCRIPIMGAPMAGVSGGLLAAATCRAGALGFI 82
               5678***************************99 PP

  == domain 2    score: 14.0 bits;  conditional E-value: 4.5e-06
  TIGR01302 327 gipviADGGirysGdivKalalGadavmlGsllagteEspgevvlk 372
                 ++v+A GGi     ++ alalG d +++G+ l +t+E+ g++ +k
  MMETSP1137-20121227|315_1 223 QVTVLAAGGIVDGRGLAAALALGCDGAVFGTRLWATHEAVGKEAFK 268
                689**************************************98875 PP

>> TIGR02814  pfaD_fam: PfaD family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.2   0.0   0.00024       0.2      10      72 ..      45     107 ..      40     129 .. 0.78
   2 !    9.6   0.4   9.2e-05     0.076     171     281 ..     169     280 ..     134     289 .. 0.77

  Alignments for each domain:
  == domain 1    score: 8.2 bits;  conditional E-value: 0.00024
  TIGR02814  10 efredyevryaylaGamakgiaskelvialgragllgffGagGlsl.eeveeaiekiqqalekg 72 
                +f ++++ r + + Ga + g++   l  a  rag lgf Gag ls  ++++e +   ++++++g
  MMETSP1137-20121227|315_1  45 TFYQQFGCRIPIM-GAPMAGVSGGLLAAATCRAGALGFIGAGHLSDpSALREQVGLFRANVPDG 107
                799********88.566679**********************9974145666665555555555 PP

  == domain 2    score: 9.6 bits;  conditional E-value: 9.2e-05
  TIGR02814 171 eeeaelaaevpvadDitvea.DsGGhtDnrvlv.vllPaiirlrdelakkagykkrirvGaaGGiGtPeavaaafalGadfivtgsvnqaaveagtsdkvkklLakidvqDta 281
                +e+a+  a ++  d ++v+  ++GGh  ++    + +P +++ r +     g+ +++ v aaGGi      aaa alG d  v g+   a++ea   ++ k  L+++  +D+ 
  MMETSP1137-20121227|315_1 169 SEHAAREALLAGVDCVVVQGrEAGGHGLRAEFGrSTFP-LAAARLATDPVRGWLQQVTVLAAGGIVDGRGLAAALALGCDGAVFGTRLWATHEAVGKEAFKYALTTACTDDVI 280
                55555555555555555553256667665554313444.4555556666779999*************************************************999999986 PP

>> TIGR01304  IMP_DH_rel_2: IMP dehydrogenase family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.0     0.012       9.4      41      75 ..      50      84 ..      34      96 .. 0.85
   2 ?   -0.9   0.1      0.21   1.7e+02     120     160 ..     151     188 ..     116     198 .. 0.56
   3 !   13.3   2.8     1e-05    0.0082     253     301 ..     222     270 ..     143     290 .. 0.69
   4 ?   -3.7   0.1       1.5   1.2e+03     195     225 ..     336     366 ..     333     382 .. 0.68

  Alignments for each domain:
  == domain 1    score: 3.2 bits;  conditional E-value: 0.012
  TIGR01304 41 yrfelPvlaspmdalvspelaielgelGglGvlnl 75
               +   +P++ +pm ++    la    + G+lG + +
  MMETSP1137-20121227|315_1 50 FGCRIPIMGAPMAGVSGGLLAAATCRAGALGFIGA 84
               45679**************************9976 PP

  == domain 2    score: -0.9 bits;  conditional E-value: 0.21
  TIGR01304 120 kriaevrdaGvitavrlsPqnasklakvvveaGvdllviqg 160
                ++++  +  G ++ +++   ++++ a+  + aGvd +v+qg
  MMETSP1137-20121227|315_1 151 ENVKLAQSLGSLVVAQI---GSEHAAREALLAGVDCVVVQG 188
                34444444444444433...344444555667777777776 PP

  == domain 3    score: 13.3 bits;  conditional E-value: 1e-05
  TIGR01304 253 ryvhviadGgietsGdlakaiacGadavvlGsPlaraaeaaGrGffwga 301
                + v v+a Ggi  +  la a+a G d  v+G+ l  + ea G+  f  a
  MMETSP1137-20121227|315_1 222 QQVTVLAAGGIVDGRGLAAALALGCDGAVFGTRLWATHEAVGKEAFKYA 270
                4588**************************************9766443 PP

  == domain 4    score: -3.7 bits;  conditional E-value: 1.5
  TIGR01304 195 dyetalhlmrtGaagvlvGggtgaatttrev 225
                +y+ al+   +  a+vl G g g+  t +++
  MMETSP1137-20121227|315_1 336 EYRKALDEGIASRAAVLAGEGVGCIDTIESA 366
                5777777777778888888777777665544 PP

>> TIGR02151  IPP_isom_2: isopentenyl-diphosphate delta-isomerase, type 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.1      0.77   6.3e+02     280     296 ..      57      73 ..      55      76 .. 0.88
   2 ?   10.7   0.0   4.9e-05      0.04     253     302 ..     217     266 ..     200     285 .. 0.83

  Alignments for each domain:
  == domain 1    score: -3.1 bits;  conditional E-value: 0.77
  TIGR02151 280 LGAdlvglarplLkaae 296
                +GA ++g+++ lL aa+
  MMETSP1137-20121227|315_1  57 MGAPMAGVSGGLLAAAT 73 
                9***********99876 PP

  == domain 2    score: 10.7 bits;  conditional E-value: 4.9e-05
  TIGR02151 253 vrsaakkleliasGGlrsgldvakalaLGAdlvglarplLkaaekegeea 302
                vr + ++++++a+GG+ +g  +a alaLG d + +   l  + e+ g+ea
  MMETSP1137-20121227|315_1 217 VRGWLQQVTVLAAGGIVDGRGLAAALALGCDGAVFGTRLWATHEAVGKEA 266
                5667899**********************998888877777766666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (396 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       143  (0.034861); expected 82.0 (0.02)
Passed bias filter:                      113  (0.0275475); expected 82.0 (0.02)
Passed Vit filter:                        19  (0.00463189); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.40u 0.16s 00:00:00.56 Elapsed: 00:00:00.61
# Mc/sec: 856.85
//
Query:       MMETSP1137-20121227|316_1  [L=234]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (234 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        95  (0.0231594); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.16s 00:00:00.35 Elapsed: 00:00:00.34
# Mc/sec: 908.40
//
Query:       MMETSP1137-20121227|317_1  [L=392]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (392 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       110  (0.0268162); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.12s 00:00:00.41 Elapsed: 00:00:00.41
# Mc/sec: 1261.94
//
Query:       MMETSP1137-20121227|318_1  [L=286]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (286 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       105  (0.0255973); expected 82.0 (0.02)
Passed bias filter:                      100  (0.0243784); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.16s 00:00:00.41 Elapsed: 00:00:00.52
# Mc/sec: 725.94
//
Query:       MMETSP1137-20121227|319_1  [L=249]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (249 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        99  (0.0241346); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.16s 00:00:00.37 Elapsed: 00:00:00.38
# Mc/sec: 864.88
//
Query:       MMETSP1137-20121227|320_1  [L=345]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (345 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        76  (0.0185275); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.14s 00:00:00.39 Elapsed: 00:00:00.74
# Mc/sec: 615.35
//
Query:       MMETSP1137-20121227|321_1  [L=186]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0072   11.8  13.6     0.0085   11.6   9.4    1.2  1  TIGR02169 SMC_prok_A: chromosome segregation protein SMC
  ------ inclusion threshold ------
       0.39    7.2  12.3       0.23    7.9   4.9    1.9  2  TIGR02231 TIGR02231: conserved hypothetical protein
        7.9    3.3  14.6         23    1.8  10.1    1.8  1  TIGR01541 tape_meas_lam_C: phage tail tape measure protein, lambda family


Domain annotation for each model (and alignments):
>> TIGR02169  SMC_prok_A: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.6   9.4   6.2e-06    0.0085     670     791 ..      31     150 ..       6     186 .] 0.51

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 6.2e-06
  TIGR02169 670 sasekeklerlrerleeLereleslqselrriekrldelssklsdaekkieeiekeleqleeeeeklkerleeleeklseleeeleekkeelkeleaeieeleeklaklkealedleaelse 791
                +a e+  le+ +e  +eL +el++    +++++  +d  ++++++  ++++ ieke+++++++ e+l+ +l+e e++l+e +e+ ++  ++++++ ++  + e++la l+e+++ l++e++ 
  MMETSP1137-20121227|321_1  31 TAIESGTLEKCEEIQQELLKELAAYEFGMQKARCLIDTNRQQVDEYGEMHRGIEKEMQTMQQDIEQLAVQLKE-ERRLREQKEQYAALSRRIQQYPSRS-QTERNLALLEEQIALLNEEDAA 150
                4445555555555555555555555555555555555555555555555555555555555555555555554.3344444555555555555554442.3344444444444444333322 PP

>> TIGR02231  TIGR02231: conserved hypothetical protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   4.9   0.00017      0.23      77     179 ..       9     113 ..       3     123 .. 0.84
   2 ?    3.1   2.2    0.0049       6.6     120     195 ..     102     176 ..      99     180 .. 0.87

  Alignments for each domain:
  == domain 1    score: 7.9 bits;  conditional E-value: 0.00017
  TIGR02231  77 rkkireleaeledledradalkklk..kfledirekltepikdlkreeadlkelkklldfaeseieklleedreveakirelekklselenelralltekeqrsk 179
                r+++++ ea l+ l  +  a+ + +  ++le+ +e  +e  k+l   e  +++ + l+d +++++ ++ e  r +e++++ +++ + +l ++l++ +  +eq+++
  MMETSP1137-20121227|321_1   9 RQRLLAKEAPLRSLSKKFLAFATAIesGTLEKCEEIQQELLKELAAYEFGMQKARCLIDTNRQQVDEYGEMHRGIEKEMQTMQQDIEQLAVQLKEERRLREQKEQ 113
                677777888888888888888877777888888888888888899999******************************************999988885555444 PP

  == domain 2    score: 3.1 bits;  conditional E-value: 0.0049
  TIGR02231 120 reeadlkelkklldfaeseieklleedreveakirelekklselenelralltekeqrskkvlvtleatedaeael 195
                +ee+ l+e k+ +++    i+++ + ++  e++ + le++++ l++e  a+  + eqrsk     + a +d +++l
  MMETSP1137-20121227|321_1 102 KEERRLREQKEQYAALSRRIQQYPSRSQ-TERNLALLEEQIALLNEEDAAIAAKLEQRSKCFAGFMHALQDLQVQL 176
                6789999999999999999999988765.68999999********9999999999999998888888888888887 PP

>> TIGR01541  tape_meas_lam_C: phage tail tape measure protein, lambda family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8  10.1     0.017        23      50     141 ..      31     117 ..       2     185 .. 0.79

  Alignments for each domain:
  == domain 1    score: 1.8 bits;  conditional E-value: 0.017
  TIGR01541  50 lelleklaeaekseraqykrqlda..lGlgdkqrerleerlqierkfaeqqrdlkkaikakgeagsdeykeqlaalkaalnealaelkdyyaav 141
                +++ +   e+ +++++++ ++l+a  +G+ +k+r  ++ + q+ ++++e+ r+++k+++      ++   e   a+++ ++++l e+k+ yaa+
  MMETSP1137-20121227|321_1  31 TAIESGTLEKCEEIQQELLKELAAyeFGM-QKARCLIDTNRQQVDEYGEMHRGIEKEMQT----MQQDI-E-QLAVQLKEERRLREQKEQYAAL 117
                45555566777788888888888622555.567788899999999999999999999887....23322.3.3356777889999999999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (186 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       382  (0.0931253); expected 82.0 (0.02)
Passed bias filter:                      139  (0.0338859); expected 82.0 (0.02)
Passed Vit filter:                        20  (0.00487567); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.30u 0.14s 00:00:00.44 Elapsed: 00:00:00.43
# Mc/sec: 570.93
//
Query:       MMETSP1137-20121227|323_1  [L=609]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (609 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        50  (0.0121892); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.12s 00:00:00.50 Elapsed: 00:00:00.51
# Mc/sec: 1576.11
//
Query:       MMETSP1137-20121227|324_1  [L=385]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (385 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        41  (0.00999512); expected 82.0 (0.02)
Passed bias filter:                       34  (0.00828864); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.17s 00:00:00.44 Elapsed: 00:00:00.44
# Mc/sec: 1154.90
//
Query:       MMETSP1137-20121227|325_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        12  (0.0029254); expected 82.0 (0.02)
Passed bias filter:                       12  (0.0029254); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.15s 00:00:00.25 Elapsed: 00:00:00.45
# Mc/sec: 152.52
//
Query:       MMETSP1137-20121227|326_1  [L=361]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (361 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        54  (0.0131643); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.13s 00:00:00.40 Elapsed: 00:00:00.52
# Mc/sec: 916.31
//
Query:       MMETSP1137-20121227|327_1  [L=226]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (226 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        50  (0.0121892); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.15s 00:00:00.36 Elapsed: 00:00:00.28
# Mc/sec: 1065.34
//
Query:       MMETSP1137-20121227|328_1  [L=249]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (249 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        57  (0.0138957); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.16s 00:00:00.37 Elapsed: 00:00:00.35
# Mc/sec: 939.01
//
Query:       MMETSP1137-20121227|329_1  [L=401]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (401 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       133  (0.0324232); expected 82.0 (0.02)
Passed bias filter:                       99  (0.0241346); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.15s 00:00:00.44 Elapsed: 00:00:00.52
# Mc/sec: 1017.84
//
Query:       MMETSP1137-20121227|330_1  [L=619]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (619 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       217  (0.052901); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.16s 00:00:00.56 Elapsed: 00:00:00.48
# Mc/sec: 1702.11
//
Query:       MMETSP1137-20121227|331_1  [L=162]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (162 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        70  (0.0170648); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.15s 00:00:00.31 Elapsed: 00:00:00.28
# Mc/sec: 737.32
//
Query:       MMETSP1137-20121227|332_1  [L=58]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        51  (0.012433); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.25
# Mc/sec: 306.21
//
Query:       MMETSP1137-20121227|333_1  [L=412]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (412 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        89  (0.0216967); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.16s 00:00:00.44 Elapsed: 00:00:00.42
# Mc/sec: 1294.75
//
Query:       MMETSP1137-20121227|335_1  [L=297]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.84    7.7   6.7       0.34    8.9   1.6    2.5  2  TIGR01402 fliQ: flagellar biosynthetic protein FliQ


Domain annotation for each model (and alignments):
>> TIGR01402  fliQ: flagellar biosynthetic protein FliQ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.1      0.12   4.8e+02      14      33 ..     138     157 ..     132     159 .. 0.82
   2 ?    8.9   1.6   8.3e-05      0.34      28      70 ..     185     229 ..     182     237 .. 0.88

  Alignments for each domain:
  == domain 1    score: -1.2 bits;  conditional E-value: 0.12
  TIGR01402  14 lklvlllsapvllvalvvGl 33 
                 +++l++s +v + +l+v +
  MMETSP1137-20121227|335_1 138 TSQMLVISGAVFALSLLVSV 157
                56789999999999999865 PP

  == domain 2    score: 8.9 bits;  conditional E-value: 8.3e-05
  TIGR01402  28 alvvGlvisilQAvTqiqeqTLs..fvPkiivvllvllllgpwml 70 
                a++  +vi  + Av +i+ + L+  + P++++v ++l++++ w l
  MMETSP1137-20121227|335_1 185 AIMLTIVIPTFLAVISIDVAALAngWWPRLLIVCMALAFVSAWCL 229
                678889***************976699****************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (297 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       156  (0.0380302); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.25u 0.17s 00:00:00.42 Elapsed: 00:00:00.35
# Mc/sec: 1120.02
//
Query:       MMETSP1137-20121227|336_1  [L=94]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (94 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        64  (0.0156021); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.30
# Mc/sec: 413.57
//
Query:       MMETSP1137-20121227|337_1  [L=401]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (401 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       103  (0.0251097); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.18s 00:00:00.48 Elapsed: 00:00:00.50
# Mc/sec: 1058.55
//
Query:       MMETSP1137-20121227|338_1  [L=111]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (111 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       148  (0.03608); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.13s 00:00:00.28 Elapsed: 00:00:00.28
# Mc/sec: 523.24
//
Query:       MMETSP1137-20121227|340_1  [L=318]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (318 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       147  (0.0358362); expected 82.0 (0.02)
Passed bias filter:                      110  (0.0268162); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.17s 00:00:00.43 Elapsed: 00:00:00.35
# Mc/sec: 1199.22
//
Query:       MMETSP1137-20121227|341_1  [L=154]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.014   10.8  11.4      0.017   10.6   7.9    1.1  1  TIGR02169 SMC_prok_A: chromosome segregation protein SMC
       0.16    7.4  17.0        0.2    7.1  11.8    1.0  1  TIGR02168 SMC_prok_B: chromosome segregation protein SMC


Domain annotation for each model (and alignments):
>> TIGR02169  SMC_prok_A: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   7.9   8.3e-06     0.017     289     405 ..      10     134 ..       3     151 .. 0.43

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 8.3e-06
  TIGR02169 289 eqlavkekleelkaeiekleraiaek..eeeledaeerlakaeaeidklkeeieelereieeekkereklkee...lkelkeeleel....raeleevdkeaaelreelkelkekleklkeelnel 405
                eql+ +++ +e ++  + ++ra+++    ++le+   ++++++a+i + ++ei el+r+++e +  r+k+k++   ++++++  ++l     +e++e+  +  e+ + +++++ +l+ l++++ ++
  MMETSP1137-20121227|341_1  10 EQLHHQRRAQEAESAHKATQRAQDALalSRDLENQRVEKQRLHAQIAQSQSEIPELQRRLAEARTARAKIKTRpstVANAAA-IANLakpaSKEAAEEGRAESEAGQLTAQERVRLDYLRNKHGSH 134
                4444455555555554444444443311344444444445555555555555555555555555555555544111222221.1222000023333333333444444455555555555555544 PP

>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1  11.8   9.6e-05       0.2     376     475 ..      15     114 ..       3     151 .. 0.24

  Alignments for each domain:
  == domain 1    score: 7.1 bits;  conditional E-value: 9.6e-05
  TIGR02168 376 eleeeleelrsevaeleeqlaslnaelerleaeleqleerrerlkqeieelekkleeaeaelkelqeeleeleeeleeleeelerleealeeleeeleea 475
                + +++  e + +  +  +++ +l+ +le+++ e+++l ++ ++ ++ei el+++l ea++++++++++ +++ ++ + ++ ++ + +ea+ee ++e e+ 
  MMETSP1137-20121227|341_1  15 QRRAQEAESAHKATQRAQDALALSRDLENQRVEKQRLHAQIAQSQSEIPELQRRLAEARTARAKIKTRPSTVANAAAIANLAKPASKEAAEEGRAESEAG 114
                1111111111111222222222222222222222222222222222222222222222222222222222222222222111111111111111111111 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (154 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       370  (0.0901999); expected 82.0 (0.02)
Passed bias filter:                      139  (0.0338859); expected 82.0 (0.02)
Passed Vit filter:                        19  (0.00463189); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.25u 0.16s 00:00:00.41 Elapsed: 00:00:00.51
# Mc/sec: 398.56
//
Query:       MMETSP1137-20121227|342_1  [L=189]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (189 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        25  (0.00609459); expected 82.0 (0.02)
Passed bias filter:                       25  (0.00609459); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.12s 00:00:00.30 Elapsed: 00:00:00.30
# Mc/sec: 831.53
//
Query:       MMETSP1137-20121227|344_1  [L=184]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (184 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        54  (0.0131643); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.11s 00:00:00.30 Elapsed: 00:00:00.33
# Mc/sec: 735.94
//
Query:       MMETSP1137-20121227|345_1  [L=617]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (617 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       117  (0.0285227); expected 82.0 (0.02)
Passed bias filter:                      110  (0.0268162); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.14s 00:00:00.55 Elapsed: 00:00:00.56
# Mc/sec: 1454.24
//
Query:       MMETSP1137-20121227|346_1  [L=309]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (309 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       117  (0.0285227); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.16s 00:00:00.42 Elapsed: 00:00:00.32
# Mc/sec: 1274.52
//
Query:       MMETSP1137-20121227|347_1  [L=74]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (74 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        41  (0.00999512); expected 82.0 (0.02)
Passed bias filter:                       40  (0.00975134); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.17s 00:00:00.29 Elapsed: 00:00:00.24
# Mc/sec: 406.97
//
Query:       MMETSP1137-20121227|348_1  [L=89]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (89 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        48  (0.0117016); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.13s 00:00:00.26 Elapsed: 00:00:00.26
# Mc/sec: 451.81
//
Query:       MMETSP1137-20121227|350_1  [L=558]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (558 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        86  (0.0209654); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.13s 00:00:00.48 Elapsed: 00:00:00.51
# Mc/sec: 1444.12
//
Query:       MMETSP1137-20121227|351_1  [L=158]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (158 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       131  (0.0319356); expected 82.0 (0.02)
Passed bias filter:                      116  (0.0282789); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.15s 00:00:00.32 Elapsed: 00:00:00.32
# Mc/sec: 651.70
//
Query:       MMETSP1137-20121227|352_1  [L=762]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   1.4e-257  853.0   0.1   1.8e-257  852.6   0.1    1.1  1  TIGR00641 acid_CoA_mut_N: methylmalonyl-CoA mutase N-terminal domain
    8.6e-76  253.3   6.6      4e-74  247.8   1.4    2.8  2  TIGR00642 mmCoA_mut_beta: methylmalonyl-CoA mutase, small subunit
    1.1e-52  175.4   0.7    2.5e-52  174.2   0.5    1.7  1  TIGR00640 acid_CoA_mut_C: methylmalonyl-CoA mutase C-terminal domain
     0.0055   14.3   0.7       0.01   13.4   0.1    1.8  2  TIGR01501 MthylAspMutase: methylaspartate mutase, S subunit


Domain annotation for each model (and alignments):
>> TIGR00641  acid_CoA_mut_N: methylmalonyl-CoA mutase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  852.6   0.1  1.8e-260  1.8e-257       4     524 ..      70     595 ..      68     599 .. 0.98

  Alignments for each domain:
  == domain 1    score: 852.6 bits;  conditional E-value: 1.8e-260
  TIGR00641   4 aegievkrlytpadleedldele.kletfpGvkPfvrGvyatmyrarlwtirqyaGfstaeesnkfykrlleaGqkGlsvafdlathrGydsdnPrveGdvGkaGvaidsiedmkilfdgipldkvsvsmtingavlpilalyvvvaeeqGvekeklaGtiqndilkeflvrntyifPPepslriiadiiaytaknlPkfnsisisGyhiqeaGatavlelaftladGieyvravleaGl.dvdefaPrlsfffgigmnffeeiaklraarrlwaklvkeffnaknpkslllrthsqtsGvsltaqdpynnivrtaiealaavlGgtqslhtnsfdealalPtefsariarrtqliiaeesgvadvvdPlgGsyyvelltdeieekalkyiekieemGGmlkaieeGipkkeieeaaarkqkeideGkkvivGvnkykleeekevevlk...vdnsevrekqiaklkklraerdeekvkealdkltkaaekedenllalvidaararatlgeisdalkkvfgeyra 524
                +egi++k++yt+ dl +d+++++ k e++pGv Pf+rG+ya+my+ r+wtirqyaGfsta+esn+fy+ +l+aGq+Glsvafdl+thrGydsdn rv GdvG+aGva+ds+ dm++lfd ipldkvsvsmt+ngavlp+la+yvv+aeeqGv+ +klaGtiqndilkef+vrnt+i+PP+ps+r+++di+a+ta+++Pkfnsis+sGyh+qeaGa+a lelaftladGieyvra+l++G+  vd+ aPr+sfffgi mn+++eiaklraarrlwa+l+++ f++kn++sl+lrth+qtsG+sltaq+pynni+rt++ea+aav+Ggtqslhtnsfdea++lPtefsa +ar+tqli+aeesgv  vvdP+gGsy++e ltde++++a ++ie++e+ GGm+ a+++G+pk++iee+a rkq++id+G   i+Gvnk+   e +e +v++   +dn++vre q+a+l  lra+rd +kv++al++l  +a++ + nll+l i+aarar+t+geisdal++ +g+y+ 
  MMETSP1137-20121227|352_1  70 PEGIDLKPIYTASDLPADMQQTDpKAEALPGVFPFTRGPYASMYTHRPWTIRQYAGFSTAKESNEFYRANLAAGQTGLSVAFDLPTHRGYDSDNERVVGDVGMAGVAVDSVLDMETLFDSIPLDKVSVSMTMNGAVLPVLAMYVVAAEEQGVSADKLAGTIQNDILKEFMVRNTFIYPPQPSMRVVSDIMAFTAQKMPKFNSISVSGYHMQEAGADAKLELAFTLADGIEYVRAALATGVvGVDDIAPRISFFFGISMNMYMEIAKLRAARRLWATLMEKNFKPKNKRSLMLRTHCQTSGWSLTAQEPYNNIIRTTVEAMAAVMGGTQSLHTNSFDEAIGLPTEFSASLARNTQLILAEESGVGAVVDPWGGSYMMEALTDELVREASEVIEEVEALGGMAAAVASGMPKRRIEESATRKQARIDSGADAIIGVNKFTPREGHEQPVVEprvIDNTAVREAQVAQLAALRASRDPAKVTAALAALSASAASYEGNLLELSIEAARARCTVGEISDALESQWGRYVP 595
                699************9999988736789*******************************************************************************************************************************************************************************************************************637****************************************************************************************************************************************************************************************************888777777755559***********************************************************************75 PP

>> TIGR00642  mmCoA_mut_beta: methylmalonyl-CoA mutase, small subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  247.8   1.4   3.9e-77     4e-74      41     452 ..      64     509 ..      48     560 .. 0.79
   2 !    6.0   0.1   0.00061      0.63     489     584 ..     622     719 ..     594     727 .. 0.83

  Alignments for each domain:
  == domain 1    score: 247.8 bits;  conditional E-value: 3.9e-77
  TIGR00642  41 kLvvrtadGfdirplYrak........DekkklslPgeyPfvRGtsvrrdvhdeWkvreaivadddeaetneavLeaLekGvssLll...............r....vkksaiapdr...LaalLsdvlLelveveldaridraaaleallsvyakkdgadadklaldlglDPlkaalldg....vaePdlevlavavraaakelpalRavtvdavalhnaGatavaeLayalaagaeylrkLteaGyk.aeealsrikFrlaadddqFltiaklRalRelWariaevfGddeekak..arqhaetslrdvtreDpyvnlLRtslatfsaavgGadsitvlPFdvalqGlpeddFaeRiaRntqllLkeevhvgrvlDPagGsyyveeLtdslaeeaWkeFqevekaGGfskaaetesvakavdacnakRakrlatRreaitgvnef.Pn 452
                 Lv r  +G+d++p+Y+a           +k  +lPg++Pf+RG  +    h  W +r+        +e+ne   + L  G + L +               r    v+  ++a+d    ++ l   + L+ v v +       + ++a+  v a ++g  adkla+ +  D lk  +++     + +P + v+++     a+++p++  ++v +  +++aGa a  eLa++la g+ey+r+   +G + +++++ ri+F ++++ + +++iaklRa+R+lWa + e     ++k++   r h +ts +  t ++py n++Rt++++++a +gG +s+ +  Fd a+ Glp  +F+  +aRntql+L+ee+ vg v+DP gGsy +e Ltd l +ea +   eve++GG++ a+ + + ++ +++++ ++  r+    +ai+gvn+f P 
  MMETSP1137-20121227|352_1  64 SLVRRLPEGIDLKPIYTASdlpadmqqTDPKAEALPGVFPFTRGPYASMYTHRPWTIRQYA-GFSTAKESNEFYRANLAAGQTGLSVafdlpthrgydsdneRvvgdVGMAGVAVDSvldMETLFDSIPLDKVSVSMTMNGAVLP-VLAMYVVAAEEQGVSADKLAGTIQNDILKEFMVRNtfiyPPQPSMRVVSDIMAFTAQKMPKFNSISVSGYHMQEAGADAKLELAFTLADGIEYVRAALATGVVgVDDIAPRISFFFGISMNMYMEIAKLRAARRLWATLMEKNFKPKNKRSlmLRTHCQTSGWSLTAQEPYNNIIRTTVEAMAAVMGGTQSLHTNSFDEAI-GLP-TEFSASLARNTQLILAEESGVGAVVDPWGGSYMMEALTDELVREASEVIEEVEALGGMAAAVASGMPKRRIEESATRKQARIDSGADAIIGVNKFtPR 509
                5788999***********9555533322345578************9999********976.33344445544444444444443331111111111111113211134456666652113455666666666666554444333.445555666788899**************999987343357999****************************************************99999874899*********************************9877766666422689*********************************************.9**.9*********************************************************************************************9443 PP

  == domain 2    score: 6.0 bits;  conditional E-value: 0.00061
  TIGR00642 489 s...eksgkrPkvllltlGtlaerlaReqFssnllaiaGieliddeGtksaeevveavkkagadvavlCssdkeYaeeaaevakaakaaGaaelylaGa 584
                +   ++ g+rP++l++ +G+  +  + +  +s + a  G+++   + + + +ev+  + +a  +v+ + s ++ ++   + ++ka++    + l++ G 
  MMETSP1137-20121227|352_1 622 AafaSRHGRRPRILVAKMGQDGHDRGANVIASAF-ADLGFDVDVGPLFATPDEVAMQAIDADVHVVGVSSQAAGHRTLLPALVKALHRQQSETLVVCGG 719
                2444799*************99999999999876.5669999988999******88889999999999999999***9999***999999999999885 PP

>> TIGR00640  acid_CoA_mut_C: methylmalonyl-CoA mutase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  174.2   0.5   2.5e-55   2.5e-52       1     127 [.     630     755 ..     630     760 .. 0.95

  Alignments for each domain:
  == domain 1    score: 174.2 bits;  conditional E-value: 2.5e-55
  TIGR00640   1 rrvrvlvakmGqdGhdrGakviataladlGfdvdvgglfqtPeeiarqaveedvdvvGvsslaaghltlvPelieeleklGredilvvvGGviPeedveelkeaGvaevfgPGtvlaeaiedvlkev 127
                rr+r+lvakmGqdGhdrGa via+a+adlGfdvdvg+lf tP+e+a qa+++dv+vvGvss aagh tl+P+l+++l+++   + lvv+GGviP +d+++l++ Gv +v+gPGt+++ a++ +   +
  MMETSP1137-20121227|352_1 630 RRPRILVAKMGQDGHDRGANVIASAFADLGFDVDVGPLFATPDEVAMQAIDADVHVVGVSSQAAGHRTLLPALVKALHRQQ-SETLVVCGGVIPSQDYQFLHDSGVYAVYGPGTRIPVAARAIIGAL 755
                89***************************************************************************9875.57899******************************9999987666 PP

>> TIGR01501  MthylAspMutase: methylaspartate mutase, S subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.2   0.0       2.8   2.8e+03      46      57 ..     490     501 ..     488     503 .. 0.85
   2 !   13.4   0.1     1e-05      0.01       4      64 ..     634     695 ..     631     755 .. 0.74

  Alignments for each domain:
  == domain 1    score: -4.2 bits;  conditional E-value: 2.8
  TIGR01501  46 kaaietdadail 57 
                +a i+ +adai+
  MMETSP1137-20121227|352_1 490 QARIDSGADAII 501
                588999****97 PP

  == domain 2    score: 13.4 bits;  conditional E-value: 1e-05
  TIGR01501   4 vvlGviGsdahavGnkvldralsnagfrvvnlGvlsakeefikaaietdadailvssly.Gh 64 
                +++  +G d h  G +v+  a+++ gf v      ++ +e +  ai+ d   + vss   Gh
  MMETSP1137-20121227|352_1 634 ILVAKMGQDGHDRGANVIASAFADLGFDVDVGPLFATPDEVAMQAIDADVHVVGVSSQAaGH 695
                778899**********************976666778899*************999964144 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (762 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       173  (0.0421745); expected 82.0 (0.02)
Passed bias filter:                       99  (0.0241346); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.58u 0.20s 00:00:00.78 Elapsed: 00:00:00.50
# Mc/sec: 2011.51
//
Query:       MMETSP1137-20121227|353_1  [L=155]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (155 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        51  (0.012433); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.11s 00:00:00.28 Elapsed: 00:00:00.60
# Mc/sec: 340.97
//
Query:       MMETSP1137-20121227|354_1  [L=151]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.072    8.8   3.7      0.088    8.5   2.6    1.0  1  TIGR03480 HpnN: hopanoid biosynthesis associated RND transporter like protein HpnN


Domain annotation for each model (and alignments):
>> TIGR03480  HpnN: hopanoid biosynthesis associated RND transporter like protein HpnN
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   2.6   2.2e-05     0.088     564     658 ..      16     106 ..       8     113 .. 0.84

  Alignments for each domain:
  == domain 1    score: 8.5 bits;  conditional E-value: 2.2e-05
  TIGR03480 564 kpapsaeeeaaalrklaaklekalekeekpdakaakkLaeslarllakakaqaatlealqkallatLpeelerlrdaleaepvtledlPpdlrer 658
                k+  + + ea+ l  + ++l++  ++++ + a  a+k  +s+++l    +a++++++++q++  ++L  +l++++++l+  +  + dl ++++++
  MMETSP1137-20121227|354_1  16 KQTSASSSEADELTDAINELRRLKDTHDAACADSAAKACASVSQL----QAAEERRASAQEQHFVPLLVKLKSIKATLKXMNRMEVDLHESFKKQ 106
                3444677889999********************999999******....889999999999*****************98877777777777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (151 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       267  (0.0650902); expected 82.0 (0.02)
Passed bias filter:                      144  (0.0351048); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.19u 0.19s 00:00:00.38 Elapsed: 00:00:00.95
# Mc/sec: 209.79
//
Query:       MMETSP1137-20121227|355_1  [L=455]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.7e-06   22.4   0.0    1.1e-05   21.7   0.0    1.2  1  TIGR01631 Trypano_RHS: trypanosome RHS family
  ------ inclusion threshold ------
      0.016   12.7   0.0      0.033   11.7   0.0    1.5  1  TIGR03881 KaiC_arch_4: KaiC domain protein, PAE1156 family
      0.037   10.6   0.0      0.052   10.1   0.0    1.1  1  TIGR00416 sms: DNA repair protein RadA


Domain annotation for each model (and alignments):
>> TIGR01631  Trypano_RHS: trypanosome RHS family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.7   0.0   7.8e-09   1.1e-05     280     426 ..      46     179 ..      34     200 .. 0.82

  Alignments for each domain:
  == domain 1    score: 21.7 bits;  conditional E-value: 7.8e-09
  TIGR01631 280 perrvliGtPGiGKSfgvGSflLykLLHydaeklqvvaYfvkgraylfekkkggregrVkkYekekaal.dvvealvsekvkGyiiyDlvkdadepapadppaawgvillssPdeknfkeWskqrraakivinCdelkdlkAlvawrk 426
                p+ + l GtPGiGKS + G +++  LL  +    + v Y +++  y      ++++++  +Y   +    ++v  + +e    + i+D + +       +  ++ +v+l+ssPd++  k W kq++a ++ +  +  +dl+ l   ++
  MMETSP1137-20121227|355_1  46 PAXYFLTGTPGIGKS-AFGVYFVCVLLAQK----RSVLYQRAEMRYSWLLRWEDDQAKAYQYVRGSTEWeQLVYEFADE--GAWYIVDSMTP-------LSCQNLPVLLISSPDPTISKXWAKQNTARELWMPMPXFEDLEVLKGFVN 179
                667899********9.69********9655....668899*99999998888899999999999877762567777777..45667787766.......5788999**************************9999999987765555 PP

>> TIGR03881  KaiC_arch_4: KaiC domain protein, PAE1156 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   2.4e-05     0.033      26      65 ..      51      90 ..      45     129 .. 0.86

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 2.4e-05
  TIGR03881 26 vvGePGvGktilclhfiakGlregdkviyvtteesresiv 65
               ++G PG+Gk+ + ++f+   l +  +v+y  +e  +  ++
  MMETSP1137-20121227|355_1 51 LTGTPGIGKSAFGVYFVCVLLAQKRSVLYQRAEMRYSWLL 90
               79***************************99998776555 PP

>> TIGR00416  sms: DNA repair protein RadA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0   3.8e-05     0.052      94     133 ..      46      85 ..      43     144 .. 0.76

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 3.8e-05
  TIGR00416  94 GsliliGGdPGiGkstlllqvaaqlaknskkvlyvsgees 133
                 + +++ G PGiGks++ +  ++ l  ++++vly  +e  
  MMETSP1137-20121227|355_1  46 PAXYFLTGTPGIGKSAFGVYFVCVLLAQKRSVLYQRAEMR 85 
                5678899**********999999988888*****998854 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (455 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.35u 0.13s 00:00:00.48 Elapsed: 00:00:00.50
# Mc/sec: 1201.10
//
Query:       MMETSP1137-20121227|356_1  [L=325]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (325 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       123  (0.0299854); expected 82.0 (0.02)
Passed bias filter:                       96  (0.0234032); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.15s 00:00:00.41 Elapsed: 00:00:00.43
# Mc/sec: 997.59
//
Query:       MMETSP1137-20121227|357_1  [L=439]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (439 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        85  (0.0207216); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.14s 00:00:00.46 Elapsed: 00:00:00.50
# Mc/sec: 1158.86
//
Query:       MMETSP1137-20121227|358_1  [L=46]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (46 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        46  (0.011214); expected 82.0 (0.02)
Passed bias filter:                       42  (0.0102389); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:00.24
# Mc/sec: 252.98
//
Query:       MMETSP1137-20121227|360_1  [L=211]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (211 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        94  (0.0229157); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.15s 00:00:00.34 Elapsed: 00:00:00.43
# Mc/sec: 647.67
//
Query:       MMETSP1137-20121227|361_1  [L=337]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (337 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       110  (0.0268162); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.17s 00:00:00.45 Elapsed: 00:00:00.39
# Mc/sec: 1140.52
//
Query:       MMETSP1137-20121227|362_1  [L=141]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (141 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        62  (0.0151146); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.13s 00:00:00.30 Elapsed: 00:00:00.34
# Mc/sec: 547.37
//
Query:       MMETSP1137-20121227|363_1  [L=261]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      0.005   15.0   0.0     0.0078   14.3   0.0    1.3  1  TIGR02469 CbiT: precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit
     0.0097   13.2   0.0      0.013   12.8   0.0    1.1  1  TIGR03534 RF_mod_PrmC: protein-(glutamine-N5) methyltransferase, release factor-specific


Domain annotation for each model (and alignments):
>> TIGR02469  CbiT: precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.0   3.8e-06    0.0078      18      55 ..      99     135 ..      89     175 .. 0.87

  Alignments for each domain:
  == domain 1    score: 14.3 bits;  conditional E-value: 3.8e-06
  TIGR02469  18 kkgdvllDiGaGtGsvtieaarlvpkgrvyaierneea 55 
                 +g+++lDiG+G+G +   aa + p++r  +ie  +e 
  MMETSP1137-20121227|363_1  99 PDGQRFLDIGSGCGRLVFAAATIWPSLR-HGIEVVPEL 135
                5689**********************99.899987765 PP

>> TIGR03534  RF_mod_PrmC: protein-(glutamine-N5) methyltransferase, release factor-specific
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.8   0.0   6.2e-06     0.013      75     151 ..      86     166 ..      85     181 .. 0.73

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 6.2e-06
  TIGR03534  75 lLveaaleel...kkkeklkvlDlgtGsGaIalalakelpdakviavDiseeAlkvarkNakrlglke....veflksdlleal 151
                +Lv+ al++    ++    ++lD+g+G+G +  a a  +p+++ +++++ +e  +++   +++ +l e    +ef+++d +e l
  MMETSP1137-20121227|363_1  86 ELVDRALAYQgraPD--GQRFLDIGSGCGRLVFAAATIWPSLR-HGIEVVPELHALCVDALAQARLPEsgpeCEFICGDAIELL 166
                689999999853233..56********************9887.5777777777776666666666655667888888887776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (261 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        60  (0.014627); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.23u 0.11s 00:00:00.34 Elapsed: 00:00:00.53
# Mc/sec: 649.98
//
Query:       MMETSP1137-20121227|364_1  [L=621]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (621 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        46  (0.011214); expected 82.0 (0.02)
Passed bias filter:                       41  (0.00999512); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.16s 00:00:00.56 Elapsed: 00:00:00.39
# Mc/sec: 2101.67
//
Query:       MMETSP1137-20121227|365_1  [L=622]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   8.7e-247  817.9   0.9   9.8e-247  817.7   0.7    1.0  1  TIGR01394 TypA_BipA: GTP-binding protein TypA/BipA
    1.1e-57  193.5   3.7    1.6e-32  110.3   0.6    3.0  3  TIGR00484 EF-G: translation elongation factor G
      9e-55  183.8   5.4      1e-35  120.8   1.5    3.0  3  TIGR00490 aEF-2: translation elongation factor aEF-2
    2.1e-51  172.8   0.1    1.7e-44  150.0   0.0    2.2  2  TIGR01393 lepA: GTP-binding protein LepA
    5.5e-27   92.3   0.3    7.5e-27   91.9   0.2    1.2  1  TIGR00485 EF-Tu: translation elongation factor Tu
    1.5e-26   90.7   0.9    1.6e-22   77.4   0.4    2.3  2  TIGR00503 prfC: peptide chain release factor 3
    3.3e-24   83.3   0.6    5.6e-24   82.6   0.4    1.3  1  TIGR00231 small_GTP: small GTP-binding protein domain
    3.6e-20   70.0   0.4    6.6e-20   69.1   0.3    1.4  1  TIGR00475 selB: selenocysteine-specific translation elongation factor
    6.6e-20   68.8   1.2      2e-19   67.2   0.8    1.6  1  TIGR00483 EF-1_alpha: translation elongation factor EF-1, subunit alpha
    8.1e-16   55.7   4.9      3e-15   53.8   3.4    1.8  1  TIGR00487 IF-2: translation initiation factor IF-2
    8.9e-13   45.9   0.0    4.9e-12   43.4   0.0    2.1  2  TIGR02034 CysN: sulfate adenylyltransferase, large subunit
    3.4e-11   40.8   1.5    3.9e-10   37.3   1.0    2.1  1  TIGR03680 eif2g_arch: translation initiation factor 2, gamma subunit
    2.3e-09   34.1   1.8      4e-09   33.2   1.3    1.3  1  TIGR00491 aIF-2: translation initiation factor aIF-2
    5.4e-08   30.1   0.1      3e-06   24.3   0.1    2.1  2  TIGR03594 GTPase_EngA: ribosome-associated GTPase EngA
     0.0031   14.3   0.0     0.0047   13.7   0.0    1.2  1  TIGR02857 CydD: thiol reductant ABC exporter, CydD subunit
     0.0039   13.9   0.1      0.016   11.9   0.0    1.8  2  TIGR03918 GTP_HydF: [FeFe] hydrogenase H-cluster maturation GTPase HydF
     0.0051   14.0   0.4       0.02   12.1   0.3    1.8  1  TIGR00436 era: GTP-binding protein Era
     0.0079   13.1   0.5       0.04   10.8   0.3    1.9  1  TIGR00450 mnmE_trmE_thdF: tRNA modification GTPase TrmE
  ------ inclusion threshold ------
      0.012   13.2   0.0       0.13    9.7   0.0    2.3  2  TIGR03598 GTPase_YsxC: ribosome biogenesis GTP-binding protein YsxC


Domain annotation for each model (and alignments):
>> TIGR01394  TypA_BipA: GTP-binding protein TypA/BipA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  817.7   0.7  4.5e-249  9.8e-247       1     584 [.      35     619 ..      35     622 .] 0.99

  Alignments for each domain:
  == domain 1    score: 817.7 bits;  conditional E-value: 4.5e-249
  TIGR01394   1 irniaiiahvDhGkttlvDklLkqsgvlrekeeveervmDsndlererGitilakntavkykdtkinivDtPGhaDfGGevervlsmvdgvlllvDaseGplpqtrfvlkkalelglkpivvinkiDrpdarpeevvdevfdLfvelgaddeqldfpvvyasakeGvasleeedesedleplfdailehvpaPkadkdeplqllvttldydeylGriaigrverGkvkkgqqvallkkd.gkiekariskllafeglerveideaeaGdivavaGledieigetiadaeeaealpllkvdePtlsmtfsvndsPlaGkegkkvtsrkirdrLereletnvalrveeteeadkfevsGrGeLhlsiLietmrreGfelsvskPkvivkeidgkklePieeltidvpeefvgavieklgkrkgelkdmeskg.sGrvrlefkiPsrgliGfrtefltatrGegilnrvfdeyeplkgeiekrkkGslvsleeGtatayallnleerGklfvspgeevyeGmivGehsreeDldvnvlkekkltnvrssgkdeavkltpprklsLeealeyiedDelvevtPksirlrk 584
                irniai+ahvDhGkttlvD++L  +++++ + + ++r+mDsnd ererGitilakn+a+kykd+k+nivDtPGhaDfGGevervl+mvdgvlllvDa+eGp pqtrfvlkkal++g++++vv+nkiD+p+arpe v+d++fdLfvelga+d q dfp+vy+sa + va  e +d ++++ pl+d ile +p+P+ d d plql+++++ +d+++Gr+ igr+++Gkv kg  v ++    + +++++is+l+ f +l r +idea+aG+iv+ +G++d++ig+t++d++ +++l+ ++v++Pt+s+ + vn+sP+aGk gk +tsr+i+drL +el+tnval+v+et+++d+ +v GrG Lhl++LietmrreGfe++++ P+v+ ++i+g+++eP+e + +++pee++g+vi++lg+rkg++ +m s + +G v l++++Psr++ G ++++++atrG ++++++f  y+p++g+ +kr+kG l+s+e+Gt+t++ l+++++rG lf  pg+evye +ivG+h+r+ Dl+vn++++k+ltn+rs+gkd+++++tp ++l+Le+a+eyie+ e+vevtP +ir+ k
  MMETSP1137-20121227|365_1  35 IRNIAIVAHVDHGKTTLVDAMLTSAQAIQGTINKDDRMMDSNDQERERGITILAKNAAIKYKDIKVNIVDTPGHADFGGEVERVLNMVDGVLLLVDAAEGPKPQTRFVLKKALAMGHRVLVVVNKIDKPAARPEYVIDKTFDLFVELGATDXQTDFPIVYTSAINRVAGDEPDDIKDNMGPLLDKILE-LPKPQCDVDGPLQLQISNIGSDNFIGRLGIGRIKSGKVAKGLPVGICAGPgQPVRTVKISELFCFDALGRRPIDEARAGEIVVFSGIQDFNIGDTLVDPNXPQPLEPISVEKPTMSIAIGVNKSPFAGKSGKLLTSRNIKDRLAKELQTNVALQVKETSDSDTIQVFGRGLLHLTVLIETMRREGFEVMIGCPQVLEQTINGQRHEPFELVDVELPEEYSGSVIDMLGMRKGQMLEMGSVSpEGIVSLQYEVPSRAMAGVKSRLMSATRGLAVMTTTFAGYRPYAGDFDKREKGNLLSTEKGTVTSHGLMKAQDRGSLFSAPGDEVYENQIVGIHQRPGDLKVNICRQKQLTNMRSAGKDDNTNVTPAVELTLEDAVEYIEEGEFVEVTPAAIRMGK 619
                8*****************************************************************************************************************************************************************************************97.7**********************************************99846799**************************************************************************************************************************************************************************************986526********************************************************************************************************************************************************88 PP

>> TIGR00484  EF-G: translation elongation factor G
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  110.3   0.6   7.2e-35   1.6e-32       7     150 ..      32     173 ..      24     200 .. 0.89
   2 !   60.5   0.0   8.9e-20   1.9e-17     313     479 ..     239     417 ..     205     426 .. 0.79
   3 !   22.1   0.1   3.7e-08     8e-06     601     674 ..     428     503 ..     419     508 .. 0.89

  Alignments for each domain:
  == domain 1    score: 110.3 bits;  conditional E-value: 7.2e-35
  TIGR00484   7 leklrniGisahidaGktttterilfytgkihkigevhdGaatmdwmeqekerGititsaattvewkdfrinlidtPGhvdftveverslrvldGavavldavaGvepqsetvwrqakkyevPrivfvnkmdkiGanflkvveq 150
                 + +rni i+ah+d Gktt+ + +l  ++ i   g ++    +md+ +qe+erGiti +  +++++kd+++n++dtPGh df  ever l ++dG ++++da  G +pq+  v ++a   +   +v vnk+dk  a +++v ++
  MMETSP1137-20121227|365_1  32 RDDIRNIAIVAHVDHGKTTLVDAMLTSAQAIQ--GTINKDDRMMDSNDQERERGITILAKNAAIKYKDIKVNIVDTPGHADFGGEVERVLNMVDGVLLLVDAAEGPKPQTRFVLKKALAMGHRVLVVVNKIDKPAARPEYVIDK 173
                4579*******************998776665..566677799*******************************************************************************9**************9999875 PP

  == domain 2    score: 60.5 bits;  conditional E-value: 8.9e-20
  TIGR00484 313 fkvatdpfvgkltfvrvysGvlksGsevlns....rkekkervgrlvkmhankreeieevraGdiaaliGlkdtttGdtlcdekaevilesmefpePvislavePktkadqekmgialg......klaeedPtfkvftdeesg..qti.iaGmGelhldiivdrlkrefkvevnvGkPqv 479
                  + +d+f+g+l   r+ sG++ +G  v       +  +  +++ l    a  r  i+e raG+i+ + G++d   Gdtl+d++ +  le + + +P +s+a+   +   + k g+ l+      +la+e  t  +   +e++  +ti + G G lhl ++++ ++re   ev +G Pqv
  MMETSP1137-20121227|365_1 239 SNIGSDNFIGRLGIGRIKSGKVAKGLPVGICagpgQPVRTVKISELFCFDALGRRPIDEARAGEIVVFSGIQDFNIGDTLVDPNXPQPLEPISVEKPTMSIAIGVNKSPFAGKSGKLLTsrnikdRLAKELQTNVALQVKETSdsDTIqVFGRGLLHLTVLIETMRRE-GFEVMIGCPQV 417
                56889********************9886541111445678999***********************************************************88777777777766643333348999977654444444321134437899***************.5799******9 PP

  == domain 3    score: 22.1 bits;  conditional E-value: 3.7e-08
  TIGR00484 601 ePimkvevevPeeylGdvlGdlsrrrgli..egseeresvkvvkaevPlsemfGyatdlrsatqGraeysmeflky 674
                eP   v+ve Peey G v+  l  r+g++   gs + e ++ ++ evP   m G  + l sat+G a  +  f  y
  MMETSP1137-20121227|365_1 428 EPFELVDVELPEEYSGSVIDMLGMRKGQMleMGSVSPEGIVSLQYEVPSRAMAGVKSRLMSATRGLAVMTTTFAGY 503
                89999**********************9833366778899999************************999988877 PP

>> TIGR00490  aEF-2: translation elongation factor aEF-2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  120.8   1.5   4.8e-38     1e-35       6     150 ..      22     162 ..      17     181 .. 0.93
   2 !   38.7   0.0   3.3e-13   7.2e-11     283     472 ..     227     425 ..     223     428 .. 0.79
   3 !   24.4   0.0   7.1e-09   1.5e-06     623     698 ..     428     505 ..     422     515 .. 0.89

  Alignments for each domain:
  == domain 1    score: 120.8 bits;  conditional E-value: 4.8e-38
  TIGR00490   6 iakikelmekpefirnigivahidhgkttlsdnllagagmiseelageqlfldfdeqeqergitidaanvsmvheyegneylinlidtpghvdfggdvtramravdgaivvvcavegvmpqtetvlrqalkenvkpvlfinkvdr 150
                +a   e     + irni ivah+dhgkttl d +l+ a  i   +  +++++d ++qe+ergiti a n ++   y  ++  +n++dtpgh dfgg+v r +  vdg++++v+a eg  pqt  vl++al    + ++ +nk+d+
  MMETSP1137-20121227|365_1  22 VAMAAETTATRDDIRNIAIVAHVDHGKTTLVDAMLTSAQAIQGTINKDDRMMDSNDQERERGITILAKNAAIK--Y--KDIKVNIVDTPGHADFGGEVERVLNMVDGVLLLVDAAEGPKPQTRFVLKKALAMGHRVLVVVNKIDK 162
                5556677778899********************************************************9874..3..6899**************************************************************7 PP

  == domain 2    score: 38.7 bits;  conditional E-value: 3.3e-13
  TIGR00490 283 ncdpegplavvitkivvdkhagevavgrlysgaikkgsevylvds....kakariqqvgvymgpervevdeipagnivavvglkeavageticstdkkikafeaikhisepvvtvaieaknt...kdlpkli...evlrkvakedpt.vkveineetgehl..isgmgelhleiivkkirekagvevetsepivvyretvtgt 472
                +cd +gpl + i++i  d+  g + +gr+ sg++ kg  v +           +i ++  +    r ++de  ag+iv   g+++   g+t+ +++   +++e i  + +p +++ai   ++       kl+   ++  ++ake  t v ++++e +      + g g lhl + ++ +r++ g ev+++ p v+  +t+ g+
  MMETSP1137-20121227|365_1 227 QCDVDGPLQLQISNIGSDNFIGRLGIGRIKSGKVAKGLPVGICAGpgqpVRTVKISELFCFDALGRRPIDEARAGEIVVFSGIQDFNIGDTLVDPNX-PQPLEPIS-VEKPTMSIAIGVNKSpfaGKSGKLLtsrNIKDRLAKELQTnVALQVKETSDSDTiqVFGRGLLHLTVLIETMRRE-GFEVMIGCPQVL-EQTINGQ 425
                69**************************************9986411113445777777888899**************************999975.58999996.7899999999875541212344554222577899**97654778888776665511569999********99998.*******99864.6677776 PP

  == domain 3    score: 24.4 bits;  conditional E-value: 7.1e-09
  TIGR00490 623 eplqkvfinvpqdlmgaatreiqnrrgqilemkqeg..dmvtikakvpvaemfgfagairgategralwstefagfek 698
                ep++ v ++ p+++ g+++  +  r+gq+lem       +v ++ +vp + m g    + +at+g a+ +t fag+  
  MMETSP1137-20121227|365_1 428 EPFELVDVELPEEYSGSVIDMLGMRKGQMLEMGSVSpeGIVSLQYEVPSRAMAGVKSRLMSATRGLAVMTTTFAGYRP 505
                999*****************************8643115889999*******************************75 PP

>> TIGR01393  lepA: GTP-binding protein LepA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  150.0   0.0     8e-47   1.7e-44       2     370 ..      34     418 ..      33     426 .. 0.75
   2 !   23.1   0.0   2.2e-08   4.7e-06     375     477 ..     404     505 ..     397     508 .. 0.84

  Alignments for each domain:
  == domain 1    score: 150.0 bits;  conditional E-value: 8e-47
  TIGR01393   2 kirnfsiiahidhGkstladrllektkavser.elkeqlldsldlererGitikaqavrlkykakdgeeyvlnlidtPGhvdfsyevsrslaaceGalllvdaaqGveaqtlanvylalekdleiiPvinkidlPsadvervkkeieev...iGldaee....ailvsa......ktGigiee....lleaivkkvpaPkgdkeaplkalifdsvydayrGvvvyvrvveGkikkgdkikllst....gkeyeveevgvltpkl.vkeeelkaGevGyliagikdvkdvkvGdtitsvkkpa.kealpGfkkvkpv...vfaglyPidsedy...eelrdaleklklndasltyekes.skalGfGfrcGflGllhleviqerlerefdldliataPsvv 370
                 irn++i+ah+dhGk+tl+d +l +++a++   ++ ++++ds d ererGiti a++  +kyk     + ++n++dtPGh+df  ev r l+  +G+lllvdaa G + qt   +  al +  +++ v+nkid P+a +e v ++  ++   +G    +    ++  sa       +  +i++    ll++i+ ++p+P+ d + pl+  i +   d++ G +   r+++Gk++kg  + + +      ++ +++e++++     +  +e +aGe+ ++      ++d ++Gdt+ + + p   e+++  k+  ++   v  + +  +s +    ++++d l k    + +l+ +++s s +    +++   Gllhl v+ e + re  +++++ +P+v 
  MMETSP1137-20121227|365_1  34 DIRNIAIVAHVDHGKTTLVDAMLTSAQAIQGTiNKDDRMMDSNDQERERGITILAKNAAIKYK-----DIKVNIVDTPGHADFGGEVERVLNMVDGVLLLVDAAEGPKPQTRFVLKKALAMGHRVLVVVNKIDKPAARPEYVIDKTFDLfveLGATDXQtdfpIVYTSAinrvagDEPDDIKDnmgpLLDKIL-ELPKPQCDVDGPLQLQISNIGSDNFIGRLGIGRIKSGKVAKGLPVGICAGpgqpVRTVKISELFCFDALGrRPIDEARAGEIVVF----SGIQDFNIGDTLVDPNXPQpLEPISVEKPTMSIaigVNKSPFAGKSGKLltsRNIKDRLAKELQTNVALQVKETSdSDT----IQVFGRGLLHLTVLIETMRRE-GFEVMIGCPQVL 418
                69***************************976266789************************7.....468*********************************************************************99887666422245433222232344444111000555567762222444444.47*******************************************9998642223566777887776554367788888887443....457899******9998875245555555444432123344455555443222678888887655666676654330333....44555699**********999.677888888886 PP

  == domain 2    score: 23.1 bits;  conditional E-value: 2.2e-08
  TIGR01393 375 lkdgevievenPselpeeekieeveePyvkatiivpeeylgailelcqekrgvlkkleyldke.rvelvyelPlaeivldffdklksiskGyasldyelieyre 477
                +++g ++++  P+ l  ++   + +eP+  + + +peey g++++++  ++g++ ++  +++e  v+l+ye+P +  +     +l s ++G a +   +++yr 
  MMETSP1137-20121227|365_1 404 RREGFEVMIGCPQVLE-QTINGQRHEPFELVDVELPEEYSGSVIDMLGMRKGQMLEMGSVSPEgIVSLQYEVP-SRAMAGVKSRLMSATRGLAVMTTTFAGYRP 505
                5666666777776554.45556789********************************9999872589******.67899****************999999985 PP

>> TIGR00485  EF-Tu: translation elongation factor Tu
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.9   0.2   3.5e-29   7.5e-27       5     294 ..      28     319 ..      24     349 .. 0.76

  Alignments for each domain:
  == domain 1    score: 91.9 bits;  conditional E-value: 3.5e-29
  TIGR00485   5 kferskphvnvgtighvdhgkttltaaittvlakegkaaakkydeidkapeekargitintahveyetekrhyahvdcpghadyvknmitgaaqmdgailvvsaadgpmpqtrehillarqvgvpklvvflnkvdlvdde.ellelvelevrellseydfpgddvpivrgsalkalegda..eweekilelmeavdeyiptperevdkpfllaiedvfsitgrgtvvtgrvergevkvgeeveivglketkkttvtgvemf......kklldeakagdnvgvllrgvkkeeiergqvla 294
                +   + +  n+  + hvdhgkttl  a+ t  +  +++  k+   +d+  +e++rgiti + +   + ++ +   vd pghad+  ++      +dg +l+v aa+gp pqtr  +  a  +g  +++v +nk+d      e +     ++   l + d +  d piv+ sa++ + gd+  + ++++  l++++ e +p+p+ +vd p+ l i ++ s +  g +  gr++ g+v  g  v i     +   tv   e+f      ++ +dea+ag+ v  ++ g++  +i  g  l+
  MMETSP1137-20121227|365_1  28 TTATRDDIRNIAIVAHVDHGKTTLVDAMLTSAQAIQGTINKDDRMMDSNDQERERGITILAKNAAIKYKDIKVNIVDTPGHADFGGEVERVLNMVDGVLLLVDAAEGPKPQTRFVLKKALAMGH-RVLVVVNKIDKPAARpEYVIDKTFDLFVELGATDXQ-TDFPIVYTSAINRVAGDEpdDIKDNMGPLLDKILE-LPKPQCDVDGPLQLQISNIGSDNFIGRLGIGRIKSGKVAKGLPVGICAGPGQPVRTVKISELFcfdalgRRPIDEARAGEIV--VFSGIQDFNI--GDTLV 319
                5555556679***************999888777777777777789*************9887777778888999************9999999*******************87777777775.566779***985543143333333333334455555.489***********998622577788888888876.79****************************************9999864433333343334433344457889999999865..5667764433..44555 PP

>> TIGR00503  prfC: peptide chain release factor 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.4   0.4   7.5e-25   1.6e-22      10     156 ..      34     174 ..      27     201 .. 0.87
   2 !   11.1   0.0   9.2e-05      0.02     312     379 ..     249     320 ..     240     408 .. 0.85

  Alignments for each domain:
  == domain 1    score: 77.4 bits;  conditional E-value: 7.5e-25
  TIGR00503  10 krrtfaiishpdaGkttltekvllyGnaiqeaGavkargsqrsaksdwmemekqrGisittsvlqfdyrdklvnlldtpGhedfsedtyrtltavdsalmvidaakGveertrkllevtrlrdlpiltflnkldrdirdplelldev 156
                  r++ai++h d Gkttl + +l   +aiq  G++       +   d  + e++rGi+i +    ++y+d  vn++dtpGh df  +  r l  vd +l+++daa G + +tr +l+ +      +l  +nk+d++   p  ++d+ 
  MMETSP1137-20121227|365_1  34 DIRNIAIVAHVDHGKTTLVDAMLTSAQAIQ--GTINK----DDRMMDSNDQERERGITILAKNAAIKYKDIKVNIVDTPGHADFGGEVERVLNMVDGVLLLVDAAEGPKPQTRFVLKKALAMGHRVLVVVNKIDKPAARPEYVIDKT 174
                569**************************9..55542....33345566889*****************************************************************9999999***************99888864 PP

  == domain 2    score: 11.1 bits;  conditional E-value: 9.2e-05
  TIGR00503 312 rvaflrvvsGkyekdmklkhv....rtgkdvvlsdalkllagdresveeayaGdiiGlhnhGtiqiGdtvtq 379
                r+ + r+ sGk  k++ +       +  ++v++s+   + a  r  ++ea aG+i+ +     ++iGdt+ +
  MMETSP1137-20121227|365_1 249 RLGIGRIKSGKVAKGLPVGICagpgQPVRTVKISELFCFDALGRRPIDEARAGEIVVFSGIQDFNIGDTLVD 320
                5666689999999998876541112456899**************************************865 PP

>> TIGR00231  small_GTP: small GTP-binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.6   0.4   2.6e-26   5.6e-24       3     126 ..      35     164 ..      33     185 .. 0.87

  Alignments for each domain:
  == domain 1    score: 82.6 bits;  conditional E-value: 2.6e-26
  TIGR00231   3 eikivivGhvdvGKstLlnsllknkisiteskpgvtrdyvt....eqieedGkt............ykvnllDTaGqedfdairrlyvreverslevvdivilvldveeglekqtkeiiheakkkgvpiilvvnKiDlkd 126
                 ++i+iv+hvd+GK+tL + +l+      +++ ++ +d+++    +q++e+G+t            +kvn++DT+G++df         ever+l +vd+v+l++d+ eg+++qt+ + + a ++g  +++vvnKiD+  
  MMETSP1137-20121227|365_1  35 IRNIAIVAHVDHGKTTLVDAMLTSAQ---AIQGTINKDDRMmdsnDQERERGITilaknaaikykdIKVNIVDTPGHADF-------GGEVERVLNMVDGVLLLVDAAEGPKPQTRFVLKKALAMGHRVLVVVNKIDKPA 164
                689*****************999884...455555555443222289*********************************.......*******************************999999*************987 PP

>> TIGR00475  selB: selenocysteine-specific translation elongation factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.1   0.3   3.1e-22   6.6e-20       2     209 ..      37     266 ..      36     305 .. 0.76

  Alignments for each domain:
  == domain 1    score: 69.1 bits;  conditional E-value: 3.1e-22
  TIGR00475   2 iiataGHvDHGKttLlka.ltgid............adrlPeEkKRGltiDlGyaylpledkvlgliDvPGHekflknalagvggidaalLvvdadeGvkaqtkEHLavlkllgikelivvltKaDrvd...eeevkevEeelkeileeeeflknakivkvsA...ktGqGieeLkkelknLlesl....dak.dkqkplrlaiDraFkvKGaGtvvtGtafsGevkvgDel 209
                +ia+  HvDHGKttL+ a lt  +             d   +E+ RG+ti    a ++++d +++++D PGH  f  ++   ++ +d++lL+vda eG+k+qt+  L+ +  +g + ++vv++K+D+     e  ++++  +  e+      + +  iv +sA   + G   +++k+++  Ll+++    + + d++ pl+l i ++ +   +G    G + sG+v  g  +
  MMETSP1137-20121227|365_1  37 NIAIVAHVDHGKTTLVDAmLTSAQaiqgtinkddrmMDSNDQERERGITILAKNAAIKYKDIKVNIVDTPGHADFGGEVERVLNMVDGVLLLVDAAEGPKPQTRFVLKKALAMGHR-VLVVVNKIDKPAarpEYVIDKTFDLFVELGAT-DXQTDFPIVYTSAinrVAGDEPDDIKDNMGPLLDKIlelpKPQcDVDGPLQLQISNIGSDNFIGRLGIGRIKSGKVAKGLPV 266
                68999**********987346555666777787777778899**************************************************************999999888877.99*******97611133455555555554444.4444888999998444468888889988777776652111333467777787777777777777777777777777766555 PP

>> TIGR00483  EF-1_alpha: translation elongation factor EF-1, subunit alpha
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.2   0.8   9.2e-22     2e-19       6     261 ..      34     267 ..      29     306 .. 0.83

  Alignments for each domain:
  == domain 1    score: 67.2 bits;  conditional E-value: 9.2e-22
  TIGR00483   6 ehlnvafighvdsgkstlvgrllyeagaiderlleklkkeaeekgkasfefayvldklkeerergvtidvahkkfetdkyevtivdapghrdfiknmitgasqadaavlvvavddgelevqpqtrehvllartlgikqlivainkmdsvnydeekfeelkkevsellkkvgykpdevefipvsaykgdnvvkks.enapwykgktllealdkleapekpvdkplripiqdvysitgvgtvpvgrvetgvlkkgekvv 261
                +  n+a++ hvd+gk+tlv  +l +a ai+   ++      +++         ++d   +ererg+ti    + ++ +  +v ivd+pgh df  ++       d  +l+v++ +g    +pqtr  +  a ++g + ++v +nk+d+      + e + +++ +l+  +g    + +f  v +   + v+    +++    g  ll+ + +l +p+  vd pl++ i ++ s + +g + +gr+++g + kg  v 
  MMETSP1137-20121227|365_1  34 DIRNIAIVAHVDHGKTTLVDAMLTSAQAIQGT-IN-----KDDR---------MMDSNDQERERGITILAKNAAIKYKDIKVNIVDTPGHADFGGEVERVLNMVDGVLLLVDAAEG---PKPQTRFVLKKALAMGHR-VLVVVNKIDKPA---ARPEYVIDKTFDLFVELGATDXQTDFPIVYTSAINRVAGDEpDDIKDNMG-PLLDKILELPKPQCDVDGPLQLQISNIGSDNFIGRLGIGRIKSGKVAKGLPVG 267
                5569*********************9999865.55.....2555.........89*************999999999999**********************************99...99****988889999966.66779****964...567779999**********9999998444444444444433034444445.58899999*************************************99998764 PP

>> TIGR00487  IF-2: translation initiation factor IF-2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.8   3.4   1.4e-17     3e-15      90     214 ..      38     177 ..      17     213 .. 0.75

  Alignments for each domain:
  == domain 1    score: 53.8 bits;  conditional E-value: 1.4e-17
  TIGR00487  90 vtimGhvDhGktsLLdsi...............rktkvaege.aGGitqhiGayqvekedkkkitflDtPGheaftsmrarGakvtDivvlvvaadDGvkpqtieaiehakaanvPiivainkiDkpeanpDrvkqelsey 214
                ++i+ hvDhGkt+L+d +               r ++ +++e   Git       ++++d  k+  +DtPGh+ f     r  ++ D v+l v a +G kpqt   ++ a a +  ++v++nkiDkp a p+ v+++  ++
  MMETSP1137-20121227|365_1  38 IAIVAHVDHGKTTLVDAMltsaqaiqgtinkddRMMDSNDQErERGITILAKNAAIKYKDI-KVNIVDTPGHADFGGEVERVLNMVDGVLLLVDAAEGPKPQTRFVLKKALAMGHRVLVVVNKIDKPAARPEYVIDKTFDL 177
                899************9752222222222221111112223332579999999999999999.5*********************************************************************999876554 PP

>> TIGR02034  CysN: sulfate adenylyltransferase, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.4   0.0   2.3e-14   4.9e-12      54     370 ..      72     396 ..      37     409 .. 0.76
   2 ?   -3.2   0.0       3.2   6.9e+02     262     296 ..     574     608 ..     564     614 .. 0.70

  Alignments for each domain:
  == domain 1    score: 43.4 bits;  conditional E-value: 2.3e-14
  TIGR02034  54 lvdGlqaereqgitidvayryfstdkrkfivadtPGheqytrnmatgastadlavllvdarkGvleqtrrhsiiasllGikhvvlavnkidlvdyd.eevfeeikkdylalaeklgvsdvtviPlsalkGdnvv.eksesmpWyeGptllevletveveesaeeeelrlpvqyvnrpnldfrGyaGtiasGsvkvGdevvvlps.g...resrvarivtfd....gelekaeaGeavtlvledeidisrGdllaaadea....pevadqfaaelvwladeallpGksyklklgtkkvrasvaeikhkvdvntlekeaakelelneiglvkl 370
                ++d  + ere+giti       + +  k  + dtPGh  +  ++       d ++llvda +G   qtr     a  +G + + + vnkid      e v ++  + +++l ++  ++d+ ++  sa++   v+ ++ + ++   Gp l ++le     +   + +l+l +  +  +n   r   G i+sG+v++G  v +    g   r+ +++++  fd    + +++a+aGe v++   +  d + Gd l++ +      p ++++ ++++    +++  +Gks kl ++ +      +e++ +v ++  e+++++++++   gl +l
  MMETSP1137-20121227|365_1  72 MMDSNDQERERGITILAKNAAIKYKDIKVNIVDTPGHADFGGEVERVLNMVDGVLLLVDAAEGPKPQTRFVLKKALAMGHRVL-VVVNKIDKPAARpEYVIDKTFDLFVELGATDXQTDFPIVYTSAIN--RVAgDEPDDIKDNMGPLLDKILEL-PKPQCDVDGPLQLQISNIGSDNFIGRLGIGRIKSGKVAKGLPVGICAGpGqpvRTVKISELFCFDalgrRPIDEARAGEIVVFSGIQ--DFNIGDTLVDPNXPqplePISVEKPTMSIAIGVNKSPFAGKSGKLLTSRNIKDRLAKELQTNVALQVKETSDSDTIQVFGRGLLHL 396
                7899999********8877777778889999*************************************999999989997765.569****97665166777777888888888888888888888875..45446677788889*********4.4455566789999999999888877877899***********99875323222566777777887332235899*****88776555..55669999988763111133445555555544556666788888877777777777788888888887777777777666666555 PP

  == domain 2    score: -3.2 bits;  conditional E-value: 3.2
  TIGR02034 262 arivtfdgelekaeaGeavtlvledeid.isrGdll 296
                +++ ++  + +++++  av l+led+++ i+ G+++
  MMETSP1137-20121227|365_1 574 TNMRSAG-KDDNTNVTPAVELTLEDAVEyIEEGEFV 608
                4544444.4466778899999999999855667765 PP

>> TIGR03680  eif2g_arch: translation initiation factor 2, gamma subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.3   1.0   1.8e-12   3.9e-10       7     183 ..      37     201 ..      31     241 .. 0.71

  Alignments for each domain:
  == domain 1    score: 37.3 bits;  conditional E-value: 1.8e-12
  TIGR03680   7 niglvGhvDhGkttlvkaltGvwtdthseelkrgisiklGyadaeikkceeceepeaytteekceecgsetellrkvsfvDaPGhetLmatmlsGaalmdgalLviaaneevPqpqtkehlvaleiigiknivivqnkidl..vskekale.nyeeikefvkgtvaenapiiPvsalkkv 183
                ni++v hvDhGkttlv a+         + ++ +i       d  +++ ++ e+++ +t   k      +     kv +vD+PGh  +   +     ++dg lL ++a+e  P+pqt+  l+    +g + + +v nkid      e +++  ++   e+  +    + pi+  sa+++v
  MMETSP1137-20121227|365_1  37 NIAIVAHVDHGKTTLVDAMLT-----SAQAIQGTIN-----KDDRMMDSNDQERERGITILAKNAA--IK-YKDIKVNIVDTPGHADFGGEVERVLNMVDGVLLLVDAAEG-PKPQTRFVLKKALAMGHRVL-VVVNKIDKpaARPEYVIDkTFDLFVELGATDXQTDFPIVYTSAINRV 201
                9****************9753.....3334444433.....5778888888888888887764443..33.34568************99999999************997.8*********9999998765.5669**96213345555414555566666666778888888888776 PP

>> TIGR00491  aIF-2: translation initiation factor aIF-2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.2   1.3   1.9e-11     4e-09       7     133 ..      38     162 ..      34     168 .. 0.87

  Alignments for each domain:
  == domain 1    score: 33.2 bits;  conditional E-value: 1.9e-11
  TIGR00491   7 vavlGhvdhGkttlldkirktrvakreaGgitqhiGaseiPidvikrlcgdllkklkidlkiPGllvidtPGheaftslrkrGGaladiailvvdineGfkpqtveavnilrqlktPfvvaankidr 133
                +a++ hvdhGkttl+d +  ++ a +  G i ++    +   +  +r    l k+  i+ k   + ++dtPGh  f     r   + d  +l+vd  eG kpqt   ++    +    +v  nkid+
  MMETSP1137-20121227|365_1  38 IAIVAHVDHGKTTLVDAMLTSAQAIQ--GTINKDDRMMDSNDQERERGITILAKNAAIKYKDIKVNIVDTPGHADFGGEVERVLNMVDGVLLLVDAAEGPKPQTRFVLKKALAMGHRVLVVVNKIDK 162
                67899*************99977765..77777666666666667777788999999999999999****************************************9998888888889999***97 PP

>> TIGR03594  GTPase_EngA: ribosome-associated GTPase EngA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.3   0.0    0.0083       1.8     169     202 ..      29      62 ..      14      68 .. 0.76
   2 !   24.3   0.1   1.4e-08     3e-06       3     124 ..      38     166 ..      37     186 .. 0.75

  Alignments for each domain:
  == domain 1    score: 5.3 bits;  conditional E-value: 0.0083
  TIGR03594 169 eeeeeepikiaiiGrpNvGKStLvNallgeervi 202
                + ++++  +iai+     GK tLv a+l + ++i
  MMETSP1137-20121227|365_1  29 TATRDDIRNIAIVAHVDHGKTTLVDAMLTSAQAI 62 
                222345678******************9998887 PP

  == domain 2    score: 24.3 bits;  conditional E-value: 1.4e-08
  TIGR03594   3 vaivGrpNVGKStLfNrlvkkrkAi.........v......edtpgvTRDrkygeaelkgkefiliDTgGleeeedelekeireqaelaieeadvilfvvdareglteeDeeiaklLrkskkpvilvvNKvdnkkee 124
                +aiv     GK tL+  ++ + +Ai         +      e + g+T   k++ +++k+ +++++DT+G         ++   ++e  +++ d +l++vda eg +++ + + k     +++v++vvNK+d+ +++
  MMETSP1137-20121227|365_1  38 IAIVAHVDHGKTTLVDAMLTSAQAIqgtinkddrMmdsndqERERGITILAKNAAIKYKDIKVNIVDTPGH--------ADFGGEVERVLNMVDGVLLLVDAAEGPKPQTRFVLKKALAMGHRVLVVVNKIDKPAAR 166
                66777777777777777777777763332222221111111224688888899999**************9........3444567889999****************************************98654 PP

>> TIGR02857  CydD: thiol reductant ABC exporter, CydD subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   0.0   2.2e-05    0.0047     348     417 ..      35     103 ..      20     132 .. 0.85

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 2.2e-05
  TIGR02857 348 gelvalvGaSGaGKstllklllgfvepteGailvngaelaeldadswrkqiawvpQkPllfegtvaenir 417
                 + +a+v++   GK+tl++++l  +++ +G+i+ +++ + + + ++ ++ i+ ++ ++++ ++ ++ ni 
  MMETSP1137-20121227|365_1  35 IRNIAIVAHVDHGKTTLVDAMLTSAQAIQGTINKDDR-MMDSNDQERERGITILAKNAAIKYKDIKVNIV 103
                56789999*************************7776.777777889999****************9996 PP

>> TIGR03918  GTP_HydF: [FeFe] hydrogenase H-cluster maturation GTPase HydF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0      0.54   1.2e+02       8      35 ..      36      63 ..      29      70 .. 0.84
   2 !   11.9   0.0   7.4e-05     0.016      58     132 ..     100     167 ..      83     191 .. 0.87

  Alignments for each domain:
  == domain 1    score: -0.8 bits;  conditional E-value: 0.54
  TIGR03918  8 lhialfGrrNaGKSsliNaltgqdvaiv 35
                +ia++ +   GK +l+ a++    ai 
  MMETSP1137-20121227|365_1 36 RNIAIVAHVDHGKTTLVDAMLTSAQAIQ 63
               5799***************999888875 PP

  == domain 2    score: 11.9 bits;  conditional E-value: 7.4e-05
  TIGR03918  58 vvliDTaGldDegeLGelRvektrevlektdlallvvdaeaeleeleeelleelkekkipvivvlnkidlkeeek 132
                v ++DT+G  D g  G       ++vl+ +d +ll+vda+++++ + + +l+++ ++   v+vv+nkid+  ++ 
  MMETSP1137-20121227|365_1 100 VNIVDTPGHADFG--G-----EVERVLNMVDGVLLLVDAAEGPKPQTRFVLKKALAMGHRVLVVVNKIDKPAARP 167
                6788888888876..2.....35789*******************************************987654 PP

>> TIGR00436  era: GTP-binding protein Era
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.1   0.3   9.2e-05      0.02       3     120 ..      38     163 ..      36     178 .. 0.76

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 9.2e-05
  TIGR00436   3 vailGrpnvGKSTLlNkllgqkisivSpkaqTTrnrisgiltegasqiifiDtPGlhekkhklnel.......lvkeirkalsevdlilfvvdsdeknke.dellleklqklkapvvlalnkldnk 120
                +ai+ + + GK TL+  +l    +i   +++  r   s     ++  +i+     ++ k  k+n +          e+++ l+ vd +l++vd+ e  k   +++l+k   +  +v++++nk+d+ 
  MMETSP1137-20121227|365_1  38 IAIVAHVDHGKTTLVDAMLTSAQAIQGTINKDDRMMDSNDQERERGITILAKNAAIKYKDIKVNIVdtpghadFGGEVERVLNMVDGVLLLVDAAEGPKPqTRFVLKKALAMGHRVLVVVNKIDKP 163
                89999999999999999999999999999888776555554444444666666666666555554422222224468899999*************999889**********************86 PP

>> TIGR00450  mnmE_trmE_thdF: tRNA modification GTPase TrmE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.8   0.3   0.00019      0.04     206     328 ..      32     162 ..      15     187 .. 0.76

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 0.00019
  TIGR00450 206 lkdglklaivGktNvGKSSLlNallkkdraiVsdikGttR.....D..........vvEedleleGilvkllDtAGiReaadkvEklGiekslkaikeadlvlyvlDaskpltkdd.eliitlkkkkkdlllvlNKiDL 328
                ++d  ++aiv ++  GK  L+ a+l+  +ai   i+   R     D            ++ ++ + i+v+++Dt G  +   +vE++        ++  d vl+++Da ++ +++  +++++     + +l+v+NKiD 
  MMETSP1137-20121227|365_1  32 RDDIRNIAIVAHVDHGKTTLVDAMLTSAQAIQGTINKDDRmmdsnDqerergitilAKNAAIKYKDIKVNIVDTPGHADFGGEVERV--------LNMVDGVLLLVDAAEGPKPQTrFVLKKALAMGHRVLVVVNKIDK 162
                5667789******************99999988776554422111111112121003356788899999999999999999999986........788899******999877766588888889999*********95 PP

>> TIGR03598  GTPase_YsxC: ribosome biogenesis GTP-binding protein YsxC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.0      0.51   1.1e+02       9      42 ..      26      59 ..      20      67 .. 0.81
   2 ?    9.7   0.0   0.00061      0.13     101     145 ..     122     166 ..     116     205 .. 0.81

  Alignments for each domain:
  == domain 1    score: 0.2 bits;  conditional E-value: 0.51
  TIGR03598  9 klkqlpedklpeiafaGrSNvGKSsliNaLtnrk 42
               + ++  +d+  +ia++     GK +l+ a++ + 
  MMETSP1137-20121227|365_1 26 AETTATRDDIRNIAIVAHVDHGKTTLVDAMLTSA 59
               55667789999****************9987765 PP

  == domain 2    score: 9.7 bits;  conditional E-value: 0.00061
  TIGR03598 101 LkgvvllvDirhelkelDlellellkeakipvlvvltKaDklkks 145
                + gv+llvD+  ++k + + +l+ + + + +vlvv++K+Dk   +
  MMETSP1137-20121227|365_1 122 VDGVLLLVDAAEGPKPQTRFVLKKALAMGHRVLVVVNKIDKPAAR 166
                6789*************************************7654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (622 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       168  (0.0409556); expected 82.0 (0.02)
Passed bias filter:                      127  (0.0309605); expected 82.0 (0.02)
Passed Vit filter:                        41  (0.00999512); expected 4.1 (0.001)
Passed Fwd filter:                        19  (0.00463189); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              19  [number of targets reported over threshold]
# CPU time: 0.89u 0.20s 00:00:01.09 Elapsed: 00:00:00.95
# Mc/sec: 864.18
//
Query:       MMETSP1137-20121227|366_1  [L=508]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (508 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        63  (0.0153584); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.13s 00:00:00.46 Elapsed: 00:00:00.50
# Mc/sec: 1341.01
//
Query:       MMETSP1137-20121227|367_1  [L=262]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (262 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        58  (0.0141394); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.17s 00:00:00.41 Elapsed: 00:00:00.33
# Mc/sec: 1047.91
//
Query:       MMETSP1137-20121227|368_1  [L=407]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (407 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       154  (0.0375427); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.11s 00:00:00.42 Elapsed: 00:00:00.43
# Mc/sec: 1249.29
//
Query:       MMETSP1137-20121227|369_1  [L=214]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.8e-72  242.5   0.1    2.1e-72  242.3   0.1    1.0  1  TIGR00389 glyS_dimeric: glycine--tRNA ligase
    8.6e-06   22.7   0.0    1.8e-05   21.6   0.0    1.4  1  TIGR00409 proS_fam_II: proline--tRNA ligase
    0.00056   16.8   0.5     0.0016   15.3   0.0    1.7  2  TIGR00442 hisS: histidine--tRNA ligase


Domain annotation for each model (and alignments):
>> TIGR00389  glyS_dimeric: glycine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  242.3   0.1   1.5e-75   2.1e-72      21     215 ..       2     213 ..       1     214 [] 0.97

  Alignments for each domain:
  == domain 1    score: 242.3 bits;  conditional E-value: 1.5e-75
  TIGR00389  21 eiYgGlaglvDygPlGaelknnikkawrkffileeevlevdspiltpeevlkasGHvdkFtDalveck.kckevfRaDhlveevlekeleg....................lsgkelkellekydincPkckgenleevrsfnLlFeteiGvsgkkkgylRPEtAqGiFinFkkllefkreklPFgvaqiGksfRnEisprqgllRvrEFeqaEie 215
                eiYgG+ag++ ygP+G ++k+n+++ wrk+f++ee+++ev+   ++p++vl +sGHv++F+D +v++  + ++ +RaD+l eev+++++ +                    +s +el  +++ky i+ P+ ++e l+e+++fnL+F t iG++g ++gylRPEtAqGiF+nFk  le + +++PFg+aq+Gk+fRnEi+pr+gl+R rEF+qaEie
  MMETSP1137-20121227|369_1   2 EIYGGVAGFYTYGPPGSAVKQNLIDLWRKHFVIEENLMEVN---IMPHDVLFTSGHVERFNDFIVKDSsDPNKFYRADKLLEEVMDARMAEkgvseelkveyqkvkaqadaYSREELMAVFSKYAIKAPESGAE-LTEPQEFNLMFPTPIGPTGMLHGYLRPETAQGIFLNFKFCLEQNANQMPFGIAQVGKAFRNEIAPRSGLIRQREFTQAEIE 213
                9**************************************97...9********************875267899**************9999*************************************99999.********************************************************************************9 PP

>> TIGR00409  proS_fam_II: proline--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.6   0.0   1.3e-08   1.8e-05     126     155 ..     178     207 ..     175     210 .. 0.95

  Alignments for each domain:
  == domain 1    score: 21.6 bits;  conditional E-value: 1.3e-08
  TIGR00409 126 kqlPvnlYqiqtKfRDEiRPRfGllRgREF 155
                 q+P  + q+ + fR+Ei PR Gl+R REF
  MMETSP1137-20121227|369_1 178 NQMPFGIAQVGKAFRNEIAPRSGLIRQREF 207
                69**************************** PP

>> TIGR00442  hisS: histidine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.0     0.075     1e+02     347     376 ..      87     116 ..      68     140 .. 0.68
   2 !   15.3   0.0   1.2e-06    0.0016      75     126 ..     157     213 ..     149     214 .] 0.78

  Alignments for each domain:
  == domain 1    score: -0.5 bits;  conditional E-value: 0.075
  TIGR00442 347 lrkagirvevdlegkklkkqlkyadkkgak 376
                + ++g++ e+++e +k+k+q ++ ++++  
  MMETSP1137-20121227|369_1  87 MAEKGVSEELKVEYQKVKAQADAYSREELM 116
                335566666667777777776666665544 PP

  == domain 2    score: 15.3 bits;  conditional E-value: 1.2e-06
  TIGR00442  75 LRpelTapvv...RavvenklelkkpfklyyigpvFRyE.rpqkG..RyRqFhQldve 126
                LRpe   ++    ++++e+ ++++ pf + ++g+ FR+E  p +G  R+R+F+Q+++e
  MMETSP1137-20121227|369_1 157 LRPETAQGIFlnfKFCLEQ-NANQMPFGIAQVGKAFRNEiAPRSGliRQREFTQAEIE 213
                7888877774322666665.55779**************74566666********998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (214 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       127  (0.0309605); expected 82.0 (0.02)
Passed bias filter:                      115  (0.0280351); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.23u 0.13s 00:00:00.36 Elapsed: 00:00:00.36
# Mc/sec: 784.60
//
Query:       MMETSP1137-20121227|370_1  [L=367]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (367 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        81  (0.0197465); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.12s 00:00:00.39 Elapsed: 00:00:00.40
# Mc/sec: 1211.00
//
Query:       MMETSP1137-20121227|371_1  [L=355]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (355 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       102  (0.0248659); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.16s 00:00:00.43 Elapsed: 00:00:00.48
# Mc/sec: 976.17
//
Query:       MMETSP1137-20121227|372_1  [L=133]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.22    9.4   5.5       0.32    8.9   3.8    1.4  1  TIGR03741 PRTRC_E: PRTRC system protein E


Domain annotation for each model (and alignments):
>> TIGR03741  PRTRC_E: PRTRC system protein E
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   3.8   7.7e-05      0.32      70     105 ..      94     129 ..      61     130 .. 0.90

  Alignments for each domain:
  == domain 1    score: 8.9 bits;  conditional E-value: 7.7e-05
  TIGR03741  70 areslaeqvaatravleaaaakeaeaakakkaakkk 105
                  ++la+q++a ra + a+++++a a k++++ak +
  MMETSP1137-20121227|372_1  94 LEKTLADQAEARRAKNRAVRERKAIAGKKQEEAKPE 129
                5689***************************99865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (133 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       228  (0.0555826); expected 82.0 (0.02)
Passed bias filter:                       98  (0.0238908); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.17u 0.18s 00:00:00.35 Elapsed: 00:00:00.51
# Mc/sec: 344.21
//
Query:       MMETSP1137-20121227|373_1  [L=264]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (264 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        74  (0.01804); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.15s 00:00:00.38 Elapsed: 00:00:00.53
# Mc/sec: 657.46
//
Query:       MMETSP1137-20121227|374_1  [L=152]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (152 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        79  (0.0192589); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.12s 00:00:00.28 Elapsed: 00:00:00.33
# Mc/sec: 607.95
//
Query:       MMETSP1137-20121227|375_1  [L=329]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (329 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       155  (0.0377864); expected 82.0 (0.02)
Passed bias filter:                      104  (0.0253535); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.16s 00:00:00.43 Elapsed: 00:00:00.45
# Mc/sec: 964.99
//
Query:       MMETSP1137-20121227|376_1  [L=269]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0095   13.4   0.0      0.014   12.9   0.0    1.2  1  TIGR02673 FtsE: cell division ATP-binding protein FtsE
  ------ inclusion threshold ------
      0.012   12.5   0.1      0.016   12.1   0.0    1.1  1  TIGR00362 DnaA: chromosomal replication initiator protein DnaA
      0.042   11.2   0.1        0.1    9.9   0.0    1.6  2  TIGR03420 DnaA_homol_Hda: DnaA regulatory inactivator Hda


Domain annotation for each model (and alignments):
>> TIGR02673  FtsE: cell division ATP-binding protein FtsE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.9   0.0     1e-05     0.014      27      54 ..      89     116 ..      78     143 .. 0.79

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 1e-05
  TIGR02673  27 kgeflfltGasGaGkttllklllgaekp 54 
                k+  l++ G+ GaGkt l+ +l+++ ++
  MMETSP1137-20121227|376_1  89 KAAGLYIYGPVGAGKTMLMDMLYAHTSA 116
                556689****************987654 PP

>> TIGR00362  DnaA: chromosomal replication initiator protein DnaA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   1.2e-05     0.016     138     172 ..      91     124 ..      77     140 .. 0.80

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 1.2e-05
  TIGR00362 138 nPlfiyGgvGlGKTHLlqAigneilkknpnakvvY 172
                  l+iyG vG GKT L+  +  ++ ++ p+ +v +
  MMETSP1137-20121227|376_1  91 AGLYIYGPVGAGKTMLMDMLYAHTSAR-PRLRVHF 124
                569**************9887777666.6777765 PP

>> TIGR03420  DnaA_homol_Hda: DnaA regulatory inactivator Hda
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.0   7.6e-05       0.1      11      64 ..      62     116 ..      56     142 .. 0.75
   2 ?   -2.2   0.0      0.37   5.1e+02      85     101 ..     229     245 ..     212     253 .. 0.76

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 7.6e-05
  TIGR03420  11 datldn.FlagenaellaalrelaeakaerllylwGesgsGksHLLqAacaaaee 64 
                ++++++ F  ++ +e  +a  ++++  +   ly++G+ g Gk+ L+  + a++++
  MMETSP1137-20121227|376_1  62 KQRFEDgFHDAGHKEPANAEPATLAPAKAAGLYIYGPVGAGKTMLMDMLYAHTSA 116
                5555432666677777777777788889999***************988777655 PP

  == domain 2    score: -2.2 bits;  conditional E-value: 0.37
  TIGR03420  85 legleqaelvalDdvea 101
                 + + +a+l++lD++++
  MMETSP1137-20121227|376_1 229 KSIAAEASLLCLDEMQE 245
                45567889999998875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (269 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       140  (0.0341297); expected 82.0 (0.02)
Passed bias filter:                      133  (0.0324232); expected 82.0 (0.02)
Passed Vit filter:                        46  (0.011214); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.28u 0.19s 00:00:00.47 Elapsed: 00:00:00.35
# Mc/sec: 1014.43
//
Query:       MMETSP1137-20121227|377_1  [L=326]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (326 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        89  (0.0216967); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.14s 00:00:00.39 Elapsed: 00:00:00.39
# Mc/sec: 1103.29
//
Query:       MMETSP1137-20121227|378_1  [L=438]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0081   12.8   0.4      0.013   12.2   0.0    1.5  2  TIGR00184 purA: adenylosuccinate synthase


Domain annotation for each model (and alignments):
>> TIGR00184  purA: adenylosuccinate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.2   0.0   3.1e-06     0.013     282     320 ..      24      62 ..      12      96 .. 0.81
   2 ?   -3.4   0.1      0.17   7.1e+02      90     113 ..     224     247 ..     220     249 .. 0.84

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 3.1e-06
  TIGR00184 282 egeklrkkgaefGtvtgRrRRvGwlDlvvvrkavalngi 320
                +++  +++++efGt tg +RR G + +   + a+++++ 
  MMETSP1137-20121227|378_1  24 TAQAAGERLREFGTSTGMERRAGMWKAYYEKAATEVESE 62 
                5566677888*******************9999999875 PP

  == domain 2    score: -3.4 bits;  conditional E-value: 0.17
  TIGR00184  90 rerllvseraalildyhkklDkar 113
                r ++ v +r+  +l+ h ++D+++
  MMETSP1137-20121227|378_1 224 RAHVCVRQRCVHVLNDHFHADAFS 247
                6678999**********9999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (438 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       110  (0.0268162); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.32u 0.19s 00:00:00.51 Elapsed: 00:00:00.32
# Mc/sec: 1806.60
//
Query:       MMETSP1137-20121227|379_1  [L=130]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (130 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        71  (0.0173086); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.16s 00:00:00.34 Elapsed: 00:00:00.34
# Mc/sec: 504.66
//
Query:       MMETSP1137-20121227|380_1  [L=486]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (486 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        93  (0.0226719); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.15s 00:00:00.48 Elapsed: 00:00:00.44
# Mc/sec: 1457.88
//
Query:       MMETSP1137-20121227|381_1  [L=189]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (189 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        62  (0.0151146); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.09s 00:00:00.28 Elapsed: 00:00:00.28
# Mc/sec: 890.93
//
Query:       MMETSP1137-20121227|382_1  [L=1010]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   5.7e-129  427.9   0.0   7.6e-129  427.5   0.0    1.1  1  TIGR00878 purM: phosphoribosylformylglycinamidine cyclo-ligase
   4.1e-119  396.0   0.0   5.3e-119  395.6   0.0    1.1  1  TIGR00877 purD: phosphoribosylamine--glycine ligase
    3.7e-49  164.7   0.0      9e-49  163.4   0.0    1.7  1  TIGR00639 PurN: phosphoribosylglycinamide formyltransferase
    1.6e-26   91.4   0.0    2.4e-26   90.8   0.0    1.2  1  TIGR00655 PurU: formyltetrahydrofolate deformylase
    5.9e-15   53.0   0.0    9.2e-15   52.4   0.0    1.2  1  TIGR00460 fmt: methionyl-tRNA formyltransferase
    1.3e-07   28.7   0.2    4.6e-07   26.9   0.0    1.9  2  TIGR01379 thiL: thiamine-monophosphate kinase
    3.6e-07   27.3   0.0    1.9e-06   24.9   0.0    2.0  1  TIGR02124 hypE: hydrogenase expression/formation protein HypE
     0.0034   14.3   0.6       0.81    6.5   0.1    2.2  2  TIGR03267 methan_mark_2: putative methanogenesis marker protein 2
     0.0067   12.6   0.5       0.33    6.9   0.1    2.8  1  TIGR01736 FGAM_synth_II: phosphoribosylformylglycinamidine synthase II


Domain annotation for each model (and alignments):
>> TIGR00878  purM: phosphoribosylformylglycinamidine cyclo-ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  427.5   0.0  1.7e-131  7.6e-129       1     331 [.     661     993 ..     661     994 .. 0.98

  Alignments for each domain:
  == domain 1    score: 427.5 bits;  conditional E-value: 1.7e-131
  TIGR00878   1 ltYkdaGvdieageelvkalkelvkktkrlevagelggfaglvelkdk.ykepvlvsstDGvGtklkvaeavdkhdtvGiDlvamnvnDllvvGaePlallDYlavgkldeevleeivkGlaeGckeagvalvGGetaelPglikedeyDlagtavgvvekdeiitge.kvkegdvliglessGihsnGlsLvRkvleeeaaldledkveeegktlgeellePtriYvkeilelikeekvkglahitGggllenllrvlkeelkaevdksseeleevFkllqeaGnveeeemfrtFnmGvGfvvivkeeevdkalklleekgekaleiGkvkk 331
                ++Y+ aGv+i+ag+elv+++k l+k+t r +v+g++ggf+gl++lk++ y +pvlvs+tDGvGtkl++a+++++hd +GiDlvam+vnDl+v+GaePl++lDY+a gkl+++ ++++v G+a Gck  ++al+GGetae+Pg++ +++yDlag+avg+v++ +++    ++++gdvlig++ssG+hsnG+sLvRkv+e++  ++++      g+++g  ll+Pt++Yvk++l+++k  kvk+lahitGggllenl+rvl+e++ a++d++s++  +vF +l+   +   +em+rtFn+G+G+v++v++e+++++l++l ++ge+ ++iGk+++
  MMETSP1137-20121227|382_1 661 ISYAAAGVSIDAGNELVERIKPLAKSTLRSGVMGSIGGFGGLFDLKAAgYDDPVLVSGTDGVGTKLIIAQQTRQHDRIGIDLVAMVVNDLVVQGAEPLFFLDYFASGKLEVAEAASVVGGIAAGCKACNCALIGGETAEMPGMYAPGHYDLAGFAVGAVNRTDLLPRLdSIAPGDVLIGVPSSGVHSNGFSLVRKVVERSGLSWDSPAPFAPGQSVGTALLTPTKLYVKSCLRAAKTGKVKALAHITGGGLLENLPRVLPEGMGATLDAKSWKPLPVFDWLAAGSRSGATEMLRTFNCGIGMVLVVAPEDKEAVLAILADSGEEPHVIGKLEA 993
                68********************************************988********************************************************************************************************************98549******************************************************************************************************************9********************************************9975 PP

>> TIGR00877  purD: phosphoribosylamine--glycine ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  395.6   0.0  1.2e-121  5.3e-119       2     424 ..       7     435 ..       6     436 .. 0.92

  Alignments for each domain:
  == domain 1    score: 395.6 bits;  conditional E-value: 1.2e-121
  TIGR00877   2 kvlvvgnggRehalaeklakseqvkevyv..apgNaGtarlekekeveievtdleevvefakkkkidlavigpEapLvlGlvdaleeaGikvfGpkkeAaklEasKafakdllkkagip.taeyevftepeeakeyieekgapaivvkadgLaaGKgvivv....kdeeealkaveeilekkkfgeagekvviEefleGeEvsllalvdgktvvplplaqdhkrvlegDkgpnTGGmGayspap....vvteevekkiaeeiveptvealkke.gtpykGvLyaglmltkegepkvlefnvRfgDpeaqavLplLk..sdllevllavvegkLkevelkfeekaavavvlasegyPedyvkgdeitgeekeeaekekvfyAgveeeegklvtsggRvlavvalgksleeArekayeavekikfeglfyRkdiglral 424
                 vl+vg+g+Reha+a +la+s+++ ++++     N+G++ l k+  v + +td ++v++f+k++++ lavigpEapL+ G+vd+l ++G+ ++Gp+++ a++E+sKafa +llkk+g++  + +++ft+++ a+ey+e  g+ + vvkadgL +GKgv+v+    ++ eea+++ +e  ++k    a+ + vi e+l G+E+s+l ++dg++++ +p++qdhkr++e+D+gpnTGGmGays+a+    +++ e   +++ +     + al+ke g+py+G+Ly+g mlt +g   ++efn+RfgDpe+ ++L+lL   +d+lev++a++ g L++v+++f++ a+ ++++++egyP ++ k  +i++ +  ++ + + + A  +++ g+lv +g+R + vval+++l++A+e a+  v ++k++ lf+Rkdig+ al
  MMETSP1137-20121227|382_1   7 TVLLVGSGAREHAIAVALARSPRMPALVCfgSANNPGIQKLCKAYAVGK-ITDPKAVAQFSKDNGVTLAVIGPEAPLESGVVDELTSHGVGCVGPTQALAQIESSKAFALQLLKKHGMRgLPDFREFTSLDGAQEYLELLGDGNYVVKADGLCGGKGVMVAgahlHSIEEAVAYCKECXTAK---SASXRFVICEKLVGQEFSVLSFCDGERLAHMPPVQDHKRAYENDEGPNTGGMGAYSCADhllpFLSAEALAEAHAMN-TACMVALRKElGQPYRGILYGGYMLTPTG-TMLIEFNARFGDPECLNLLSLLSpsTDFLEVCEAIAMGGLHNVSIEFQRLASCCKYAVPEGYPTKPLKNIPIDV-SGLKHPELAYLGAVDADAXGALVATGSRTVGVVALADDLSAAEELAEAEVVTVKGQ-LFHRKDIGTAAL 435
                59*********************99887633689*************98.777******************************************************************99****************************************99999***************8...8999*******************************************************666344444444444444.4455567666599****************.**********************8889***********************************************9.44444454555555667789************************************.********9876 PP

>> TIGR00639  PurN: phosphoribosylglycinamide formyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  163.4   0.0     2e-51     9e-49       2     188 ..     460     649 ..     459     653 .. 0.95

  Alignments for each domain:
  == domain 1    score: 163.4 bits;  conditional E-value: 2e-51
  TIGR00639   2 kivvliSGsGsnlqalidalkeekida.kvvlvisdkkkayglerakdaniptkvlslkdyesreefdeelaeelkeeevdlivlAGfmrilgstflsafagkilNiHPsLlpafpG...lhaveqAleagvkeaGctVHyvdeevDtGpiivqakvpilpedteetleqRikkaEhkllpeaiaklaqqr 188
                 i+vl S +Gs lq ++  + ++ +++ kv lvis+k++a  l ra+++++p + +   +  sr+++d+el+++l++e v+l+ l G+mril+++f  +++++ lN+HPsLlpaf+G   l++++  l+a v e+GctVH+v+++vD+Gp +vq+  p+l+ dt e+l++R++  E  +l eaia++aq+ 
  MMETSP1137-20121227|382_1 460 TIGVLGSTRGSSLQPVLRDIASGALKGvKVGLVISNKADAPILARAAQHGLPYEHVPV-NGRSRQDYDAELTARLEAEGVQLVLLVGWMRILSPSFCARWRRRALNVHPSLLPAFAGgmdLEVHSAVLAAKVPESGCTVHFVEDQVDAGPTVVQKRCPVLATDTAESLKARVQALEAVALSEAIATVAQEI 649
                599*******************888863799**********************99865.5699*****************************************************998788899999999********************************************************9975 PP

>> TIGR00655  PurU: formyltetrahydrofolate deformylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.8   0.0   5.4e-29   2.4e-26      84     267 ..     458     647 ..     419     650 .. 0.86

  Alignments for each domain:
  == domain 1    score: 90.8 bits;  conditional E-value: 5.4e-29
  TIGR00655  84 lkrvvilvskeehClldlllrvrsGeLe.veialvisnheelrel..vekfdipfhlvpaeketrveaekkelellkelevdlvvLakymriLspdfvkryenkiinihhsfLPafiGakPyq..ra.yerGvkiiGatahyvteeLdeGPiieqdvvrvdhkdsvedliraGrdvekvvLaravklvle 267
                   + +l s+    l+ +l  + sG+L+ v++ lvisn  ++  l  + + ++p+++vp++  +r + + +  + l+ + v+lv+L  +mriLsp f +r+  + +n+h s+LPaf G    +   a     v   G t h+v++++d+GP ++q    v  +d++e+l+   + +e v L+ a+  v +
  MMETSP1137-20121227|382_1 458 QVTIGVLGSTRGSSLQPVLRDIASGALKgVKVGLVISNKADAPILarAAQHGLPYEHVPVNGRSRQDYDAELTARLEAEGVQLVLLVGWMRILSPSFCARWRRRALNVHPSLLPAFAGGMDLEvhSAvLAAKVPESGCTVHFVEDQVDAGPTVVQKRCPVLATDTAESLKARVQALEAVALSEAIATVAQ 647
                34677888999999*************8579********998765115689*******************************************************************987542133145566679************************************************998766 PP

>> TIGR00460  fmt: methionyl-tRNA formyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.4   0.0     2e-17   9.2e-15      59     186 ..     516     647 ..     495     659 .. 0.83

  Alignments for each domain:
  == domain 1    score: 52.4 bits;  conditional E-value: 2e-17
  TIGR00460  59 pvlqpekqelleeledveelkp...dvivvvsfGkllpkelldlfplgviNvHpSlLPryrGaAP..iqraileGdt.ktgvtimqlkeelDaGdilkqeevaieeednskeLsdklselgaqlLietlkelle 186
                pv     q+  +  e+ + l++    +++ v + ++l+  +    +  ++NvHpSlLP + G+    +++a+l+ +  ++g t+  ++ ++DaG+ ++q+ +++ ++d+ + L++ +++l a  L+e++  +++
  MMETSP1137-20121227|382_1 516 PVNGRSRQD--YDAELTARLEAegvQLVLLVGWMRILSPSFCARWRRRALNVHPSLLPAFAGGMDleVHSAVLAAKVpESGCTVHFVEDQVDAGPTVVQKRCPVLATDTAESLKARVQALEAVALSEAIATVAQ 647
                444444444..555555555555459999*********************************98633699***998659***********************************************99988766 PP

>> TIGR01379  thiL: thiamine-monophosphate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.9   0.0     1e-09   4.6e-07      54     126 ..     731     803 ..     711     863 .. 0.81
   2 ?   -1.7   0.0      0.53   2.4e+02     266     306 ..     963    1004 ..     961    1007 .. 0.84

  Alignments for each domain:
  == domain 1    score: 26.9 bits;  conditional E-value: 1e-09
  TIGR01379  54 et.ppedlgwkavavnlSDlaAmGatPkalllslglpedldeeeleallkGlkelakkygvklvGGDtvkssel 126
                +t + + +g  +va+ + Dl   Ga+P ++l  ++   +l+++e+ +++ G++  +k+ ++ l+GG+t + + +
  MMETSP1137-20121227|382_1 731 QTrQHDRIGIDLVAMVVNDLVVQGAEPLFFLDYFASG-KLEVAEAASVVGGIAAGCKACNCALIGGETAEMPGM 803
                4557889*********************988877777.5*****************************998744 PP

  == domain 2    score: -1.7 bits;  conditional E-value: 0.53
  TIGR01379  266 vftvpkeeleelkdllkklgv.ltvIGrvtegegvvvlladg 306 
                 v+ v++e  e++ ++l++ g   +vIG++++ +++ +++ +g
  MMETSP1137-20121227|382_1  963 VLVVAPEDKEAVLAILADSGEePHVIGKLEARTEEPLVQVEG 1004
                 7788899999999999999999*********99988777666 PP

>> TIGR02124  hypE: hydrogenase expression/formation protein HypE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.9   0.0   4.2e-09   1.9e-06      65     309 ..     738    1001 ..     727    1008 .. 0.76

  Alignments for each domain:
  == domain 1    score: 24.9 bits;  conditional E-value: 4.2e-09
  TIGR02124   65 iGklavaGtvnDvavsGakplylslalileeGleieelerivkslaeaakkagvkivagDtKvvekgkvdkif.inttgiGvvekgael.sakeikaGdkiivsgeigdHg..aai...lavReeleletel.....esDcaalne....lveallkak..sevkalrDatRGGlaavlnEi.aeasgvgielee.ekipvkeevkaicellGldplelAnEGk.lvlvvekeaaekvleilkshplgkeaaiigevvekke.akvv 309 
                 iG   va  vnD++v+Ga+pl++   +  +  le+ e + +v  +a+ +k+++ ++++g+t  ++   + + + +   ++G+v++   l + ++i++Gd++i   + g H+   ++   +  R++l+ +++      +s  +al +     v++ l+a    +vkal  +t GGl + l  +  e +g+++  +  + +pv +  +a +     + l   n G  +vlvv++e++e+vl+il     g+e ++ig+  +++e + v+
  MMETSP1137-20121227|382_1  738 IGIDLVAMVVNDLVVQGAEPLFFLDYFA-SGKLEVAEAASVVGGIAAGCKACNCALIGGETAEMPGMYAPGHYdLAGFAVGAVNRTDLLpRLDSIAPGDVLIGVPSSGVHSngFSLvrkVVERSGLSWDSPApfapgQSVGTALLTptklYVKSCLRAAktGKVKALAHITGGGLLENLPRVlPEGMGATLDAKSwKPLPVFDWLAAGSRSGATEMLRTFNCGIgMVLVVAPEDKEAVLAILAD--SGEEPHVIGKLEARTEePLVQ 1001
                 676678889*************998875.777********************************99988875548999*****98754437899********9888888862244422235688888887643333355555444312113555444434678***********9999976526778888887763669*99999998888889999999*997468899***********975..579999999988766414455 PP

>> TIGR03267  methan_mark_2: putative methanogenesis marker protein 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.5   0.1    0.0018      0.81      54     169 ..     711     838 ..     695     900 .. 0.76
   2 !    5.8   0.0    0.0028       1.3     261     299 ..     957     995 ..     945    1006 .. 0.86

  Alignments for each domain:
  == domain 1    score: 6.5 bits;  conditional E-value: 0.0018
  TIGR03267  54 gddvlllaadGiwGklldadpw....waGycavlvnvndiaamGGkpvglvnvlsindkdvc..revleGlreGvkkfgvpvvGGhvh..p....dtkynaldvaivGiakkdaiirsdtakeGdkvi 169
                +d vl+  +dG+  kl+ a+        G   v + vnd++  G  p+ + +  +  + +v    +v+ G++ G k     ++GG +   p      +y+    a+  + + d + r d+  +Gd +i
  MMETSP1137-20121227|382_1 711 DDPVLVSGTDGVGTKLIIAQQTrqhdRIGIDLVAMVVNDLVVQGAEPLFFLDYFASGKLEVAeaASVVGGIAAGCKACNCALIGGETAemPgmyaPGHYDLAGFAVGAVNRTDLLPRLDSIAPGDVLI 838
                466777778999999986654311115688889999****************99888877752268*******************9852221111345666666666666677777777777777666 PP

  == domain 2    score: 5.8 bits;  conditional E-value: 0.0028
  TIGR03267 261 ypGsGyvltadeenvkeikevledveltasvvGeviedk 299
                  G G vl +++e+ +++ ++l d + + +v+G++++ +
  MMETSP1137-20121227|382_1 957 NCGIGMVLVVAPEDKEAVLAILADSGEEPHVIGKLEART 995
                469*******************************98765 PP

>> TIGR01736  FGAM_synth_II: phosphoribosylformylglycinamidine synthase II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.9   0.1   0.00073      0.33     456     516 ..     742     798 ..     732     939 .. 0.60

  Alignments for each domain:
  == domain 1    score: 6.9 bits;  conditional E-value: 0.00073
  TIGR01736 456 avaeavrnlaavgaePlaivdcLnfgnPekpevywqlveavkglaeaaralevpvvgGnVS 516
                 va +v +l++ gaePl + d +  g+ e +e+    ++ v g+a  ++a + +++gG+  
  MMETSP1137-20121227|382_1 742 LVAMVVNDLVVQGAEPLFFLDYFASGKLEVAEA----ASVVGGIAAGCKACNCALIGGETA 798
                677788889999999999999888887776665....568889999999999999998754 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1010 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       143  (0.034861); expected 82.0 (0.02)
Passed bias filter:                       98  (0.0238908); expected 82.0 (0.02)
Passed Vit filter:                        19  (0.00463189); expected 4.1 (0.001)
Passed Fwd filter:                         9  (0.00219405); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.77u 0.14s 00:00:00.91 Elapsed: 00:00:00.98
# Mc/sec: 1360.30
//
Query:       MMETSP1137-20121227|384_1  [L=161]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (161 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.16s 00:00:00.34 Elapsed: 00:00:00.28
# Mc/sec: 732.77
//
Query:       MMETSP1137-20121227|385_1  [L=402]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (402 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        69  (0.0168211); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.14s 00:00:00.43 Elapsed: 00:00:00.51
# Mc/sec: 1040.38
//
Query:       MMETSP1137-20121227|386_1  [L=699]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.3e-26   90.7   7.1    1.3e-26   90.7   4.9    2.2  2  TIGR03030 CelA: cellulose synthase catalytic subunit (UDP-forming)
    3.9e-20   70.0   0.0    8.2e-20   68.9   0.0    1.5  1  TIGR03937 PgaC_IcaA: poly-beta-1,6 N-acetyl-D-glucosamine synthase
    4.3e-16   56.6   0.0    7.7e-16   55.8   0.0    1.4  1  TIGR03965 actino_glycTran: mycofactocin system glycosyltransferase
    2.8e-05   21.0   0.1    6.3e-05   19.8   0.0    1.7  2  TIGR03472 HpnI: hopanoid biosynthesis associated glycosyl transferase protein HpnI


Domain annotation for each model (and alignments):
>> TIGR03030  CelA: cellulose synthase catalytic subunit (UDP-forming)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.7   4.9   1.3e-29   1.3e-26     115     560 ..      36     478 ..       4     484 .. 0.72
   2 ?   -1.9   1.0      0.13   1.4e+02     438     490 ..     574     631 ..     558     685 .. 0.53

  Alignments for each domain:
  == domain 1    score: 90.7 bits;  conditional E-value: 1.3e-29
  TIGR03030 115 pldrkpvplkldpeelPtVDvfiPtYNEdleivettvlaaknidyPadklrvyilDDGGtkqklndedpeeaeaar.rreelkelaeklgvkYitReenvHAKAGNlnealkktdGelililDaDHvptrdFLqetvGffvkdpklalvqtPHfFvsPdP..ierNLatfekvPsEnelFYgliqkGlDlWnaaFFCGSaAvlRRealeeigGiatetvtEDaetalklhsrGyesvyldrpliagLapetlsafigqRvRWArGmlqifll.dnpllkrGLkfaqrlcylnamlfwlfplpRvi....f..LiaPlayLlfgleiia.asaeellayalphllvsllvsskl.f..grvRwsfisevYEtvlalyllaavlvvllnPk.kpkFkVtaKgelldkeyis..elsrpylvlfalllvglavglyrlvaepierkvllvvlvwallnlllllaal 560
                p+ r p   k   +++P V v +P +NE  ++ +  +  a +++yP dk++v +lDD         +d+e++ ++    ++ ++l   + ++ i+R++ +  KAG + e  + ++Ge+i+i+DaD  p  dFL +t+ +f+ d+++ +vq   ++++ d   + r  ++  +     e  Y +  +G+  +n   F G   v R+  ++++gG +++t+ ED + +l+   +G++ v++      +  p  + a+ +q  RW  G +q++   ++ + ++ L    + +yln  +f +  l+  +    f  ++ Pl+ L + +e+ +  + ++++ + +   +  l++ s + f  +++ +  +  +YE ++++  l a+l  ll  k + +++Vt+K +  +   ++  ++ + + +    ++vg  +    ++ + i ++  ++++ +a+  ++++ ++l
  MMETSP1137-20121227|386_1  36 PTLRYPGRWK-RGAKIPRVLVQLPMFNET-HVAARIIDYACKMEYPRDKFEVQVLDDS--------TDAETRAVVDaAIDKWRALG--ITIEAIRRTNRQGYKAGAMHEVHDAIKGEFIAIFDADFLPEPDFLLRTIPYFQ-DKNVGFVQGRWTYLNADEslFCRYQEICLNAHIKCE-QYARFSTGNF-FN---FNGTGGVWRKACIDDAGGWNARTLVEDMDLSLRAFLKGWQFVWVYDVECPNEIPSDYKAYRKQQRRWSCGPMQLWAAaRQSVSESSLPTLHK-AYLNIFFFGVRMLATNVisftFysVLVPLLLLEYVQEVEMeETHHRFMPWWAXVWMPLLVTFSTMaFspNSFHFMILYVMYENAMSILKLGASLEGLLGLKgAMTWTVTQKLGAQASRSFDlqKVLKQISFFGKEMAVGASLIAAAFYGYSIGTS-WVFTVYFATQGFIFVIFSL 478
                4445444444.34679***********96.799999999******************9........56666666666778888886..566779*********************************************95.899*************95334443333333333333.3777777763.33...89*******************************************9999999**********************976256677777777666.79998777665555433121122345688888777777441344555554443333333333333131145556666788999999999999998888766255789999988777777775555555555555555555554455565555443.4556666776666666665 PP

  == domain 2    score: -1.9 bits;  conditional E-value: 0.13
  TIGR03030 438 llayalphllvsll....vssklfgrvRwsfisevYEtvlalyllaa.vlvvllnPkk 490
                +++y+lp  + s+     v++   +++ ++ + +++  +lal++++  ++  l nP+k
  MMETSP1137-20121227|386_1 574 VFLYTLPINALSIAllygVTTMALSEMVHTQWDDIFALALALFIVPFhMMWCLGNPRK 631
                3334444333333200111222233444555555555555555554313334444444 PP

>> TIGR03937  PgaC_IcaA: poly-beta-1,6 N-acetyl-D-glucosamine synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.9   0.0     8e-23   8.2e-20      40     339 ..      46     360 ..      14     383 .. 0.79

  Alignments for each domain:
  == domain 1    score: 68.9 bits;  conditional E-value: 8e-23
  TIGR03937  40 eleevpkvsllvpcynegenveetisallklkyp..nleviainDGskDdtaei....ldklakkedrlrvihleenqG.kaaalneglkaakseylvciDgDalldekalkylveelkenpkvgavtGnPr.irnrstllGkiqvgefssiiGlikraqrvlGkiftvsGvvalfrksaleevGyWstdmiteDidvsWklqlaeyeikyePralcwvLmPetlkGlykqrlrWaqGGaevllkelkkl.......lklkkrrlwpllleylvsviWayslllllillli.kvlvldealeveslsllelsglvl 339
                + +++p v + +p +ne++ +   i+++ k++yp  ++ev +++D +  +t ++    +dk+++    +++i +++ qG ka a++e   a k e++   D+D l +++ l   +  + ++ +vg v G    +    +l  + q +   + i + + a+  +G+ f   G   ++rk+ + + G+W++  + eD+d+s +  l++++ ++     c   +P   k   kq+ rW+ G ++      +++       l++++++++ + + +l++ + ++++  +l+ ll+ + ++  e+ e+++ +++ ++ + +
  MMETSP1137-20121227|386_1  46 RGAKIPRVLVQLPMFNETHVAARIIDYACKMEYPrdKFEVQVLDDSTDAETRAVvdaaIDKWRALGITIEAIRRTNRQGyKAGAMHEVHDAIKGEFIAIFDADFLPEPDFLLRTIPYF-QDKNVGFVQGRWTyLNADESLFCRYQEICLNAHIKCEQYARFSTGNFFNFNGTGGVWRKACIDDAGGWNARTLVEDMDLSLRAFLKGWQFVWVYDVECPNEIPSDYKAYRKQQRRWSCGPMQLWAAARQSVsesslptLHKAYLNIFFFGVRMLATNVISFTFYSVLVPLLLlEYVQEVEMEETHHRFMPWWAXVWM 360
                5578999**************************955699999999999999887111145566666678899999999989************************9998777777666.5679******976166679****************************************************************************************************999876555554001111144555566666667777777777777776666552333333344444444555555544 PP

>> TIGR03965  actino_glycTran: mycofactocin system glycosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.8   0.0   7.6e-19   7.7e-16      67     270 ..      44     253 ..      40     323 .. 0.86

  Alignments for each domain:
  == domain 1    score: 55.8 bits;  conditional E-value: 7.6e-19
  TIGR03965  67 pasldsldsvtvVvPvrdrpaglarllaalealdyprdrlevivVDDgSedpvetaaa......raaeltvrviRhdrsqGpaa.aRNaGlraartefvAFlDsDvvprpgWLeallaefsdpgValvaprvvaldaedtrlaryEavrSsLdlGpeeaavrprgaVsYvpsaalivrRrallevgGFDeslevgEDvDlvwRlveaGarv 270
                ++ + + + v v +P  +  + +ar+++    ++yprd+ ev v DD+ + ++++ +       ra  +t++ iR  ++qG  a a  +   a ++ef+A  D D +p+p +L   ++ f+d +V  v +r + l+a+++   ry +++   +   e+ a  ++g+      +  + r+++++++gG++ +  + ED Dl +R+  +G++ 
  MMETSP1137-20121227|386_1  44 WKRGAKIPRVLVQLPMFNETHVAARIIDYACKMEYPRDKFEVQVLDDSTDAETRAVVDaaidkwRALGITIEAIRRTNRQGYKAgAMHEVHDAIKGEFIAIFDADFLPEPDFLLRTIPYFQDKNVGFVQGRWTYLNADESLFCRYQEICLNAHIKCEQYARFSTGNFFNFNGTGGVWRKACIDDAGGWN-ARTLVEDMDLSLRAFLKGWQF 253
                556667889999****************9999***************99887765432111111466799***********76615666667789**************************************************99998887777666666777777777777899***********5.55789*************986 PP

>> TIGR03472  HpnI: hopanoid biosynthesis associated glycosyl transferase protein HpnI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   0.0   6.2e-08   6.3e-05      13     160 ..      18     172 ..       6     281 .. 0.85
   2 ?   -2.9   0.5      0.49     5e+02     320     362 ..     596     638 ..     563     674 .. 0.55

  Alignments for each domain:
  == domain 1    score: 19.8 bits;  conditional E-value: 6.2e-08
  TIGR03472  13 lagvlyallaavlarrfver.....aasedkalppvsvlKPlhGdepelvenLasflrQdypg..fqllfgvadadDpalavvrrLqaefpdadielvidarlhGsNlKvsNLvnllakarhdvlviaDsDisvepdYlrevvapladpdvGvVT 160
                  +v y+++a++ +  +          +  +++p+v v  P+  + +  +  ++  ++ +yp+  f++ +   + d    avv++  +++ ++ i++ +  r+  + +K + +  + ++++ + ++i D+D   epd+l + +  ++d++vG V 
  MMETSP1137-20121227|386_1  18 YSTVFYKVMALIWPDSWEPTlrypgRWKRGAKIPRVLVQLPMFNETHVAARIIDYACKMEYPRdkFEVQVLDDSTDAETRAVVDAAIDKWRALGITIEAIRRTNRQGYKAGAMHEVHDAIKGEFIAIFDADFLPEPDFLLRTIPYFQDKNVGFVQ 172
                456789999999988877766676555666778*********9888888888999*******96565555445556677899***********99999999999999*********************************************995 PP

  == domain 2    score: -2.9 bits;  conditional E-value: 0.49
  TIGR03472 320 vleratgaalrallllplrdlLsflifvaalfgsrVvWrgarl 362
                +l+  +++++ +++ l l+ ++  + ++  l   r +Wr ++l
  MMETSP1137-20121227|386_1 596 ALSEMVHTQWDDIFALALALFIVPFHMMWCLGNPRKNWRDRKL 638
                3333344444444444444444444444445555555554444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (699 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       139  (0.0338859); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.54u 0.12s 00:00:00.66 Elapsed: 00:00:01.09
# Mc/sec: 846.43
//
Query:       MMETSP1137-20121227|387_1  [L=156]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (156 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        59  (0.0143832); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.16s 00:00:00.33 Elapsed: 00:00:00.46
# Mc/sec: 447.62
//
Query:       MMETSP1137-20121227|388_1  [L=415]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   8.5e-125  415.1   9.7   1.1e-124  414.8   6.8    1.0  1  TIGR00561 pntA: NAD(P)(+) transhydrogenase (AB-specific), alpha subunit
    4.6e-35  119.1   9.7      8e-34  115.0   6.7    2.0  1  TIGR00518 alaDH: alanine dehydrogenase
    4.4e-07   27.2   1.5      1e-06   26.0   1.1    1.6  1  TIGR03366 HpnZ_proposed: putative phosphonate catabolism associated alcohol dehydrogenase
    9.2e-06   22.8   0.9    0.00034   17.6   0.8    2.3  2  TIGR03201 dearomat_had: 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase
    2.7e-05   20.7   0.9    2.7e-05   20.7   0.6    1.5  2  TIGR02819 fdhA_non_GSH: formaldehyde dehydrogenase, glutathione-independent
     0.0057   13.6   1.6     0.0095   12.9   1.1    1.3  1  TIGR02352 thiamin_ThiO: glycine oxidase ThiO
     0.0096   12.8   0.8      0.018   11.9   0.5    1.4  1  TIGR03197 MnmC_Cterm: tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain
  ------ inclusion threshold ------
      0.022   11.9   2.8      0.039   11.0   0.1    2.2  2  TIGR02853 spore_dpaA: dipicolinic acid synthetase, A subunit


Domain annotation for each model (and alignments):
>> TIGR00561  pntA: NAD(P)(+) transhydrogenase (AB-specific), alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  414.8   6.8  2.1e-127  1.1e-124       2     365 ..      36     402 ..      35     414 .. 0.96

  Alignments for each domain:
  == domain 1    score: 414.8 bits;  conditional E-value: 2.1e-127
  TIGR00561   2 igvpreslenesrvaatpktvqkllklgfdvlvesgagakasfedkafveagaeivegaeveqsdiilkvnapsdeeiaelkegkalvsfiwpaqnpellkklaaknitvlamdavpr.israqkldalssmaniagyraiieaahefgrfftgqitaagkvppakvlvigagvaglaaigaakslgaivrafdtrpevkeqvqslgaefleldfkeeggsgdgyakvmseefikaemelfaaqakevdiiittalipgkpapklitkemvdsmkagsvivdlaaeqggnceytkagevvttenqvkvigytdlpsrlatqssqlygtnlvnllkl...lckekdgnikvdvedvvirgvlvvregei 365
                igvp+e++  e rva tp++v kl k gf v v +gag +a+f+d a+v  ga iv+ +e   + ++ kv  p++ee  ++   + l+sfi+paqn ell++l a++ tv+amd++pr +sr q++dalss aniagyra+iea++ fgrff+gq+taagkvppakvlv+g gvaglaa+ +ak +ga+vr fd r  vkeq qslgaefle+d  e g +g+gyak ms+e+ +a+ ++  +q  evdi+itt + p +   kl+ + mv+++k+gsv vdlaa+ ggn   t+  + + t n+v+ igytdl srla  ss ly  n ++ +      + +k g++ +d ed+ +rg++v + g  
  MMETSP1137-20121227|388_1  36 IGVPKETVPLERRVAQTPESVAKLVKEGFVVRVAKGAGERADFNDSAYVASGASIVSQEEAFGASLVTKVMGPTPEEA-KMIGDRMLLSFIFPAQNKELLEQLQAQKATVFAMDCIPRtLSRGQAFDALSSQANIAGYRAVIEASNVFGRFFAGQMTAAGKVPPAKVLVLGGGVAGLAAVQTAKNMGAVVRLFDVRAAVKEQAQSLGAEFLEVDHEESGEGGGGYAKEMSKEWHAAANAMLLKQMEEVDIVITTXAHPWQAGAKLVDETMVKALKPGSVTVDLAASAGGNVATTVKDKAIVTPNGVTCIGYTDLNSRLAQTSSTLYANNQMKWILSagpTTTKKKGEFALDEEDIAVRGMMVLKSGXD 402
                9**************************************************************************996.5667789*******************************967*****************************************************************************************************************************************************************************************************************9887655122456788*******************9976 PP

>> TIGR00518  alaDH: alanine dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  115.0   6.7   1.6e-36     8e-34       2     324 ..      35     372 ..      34     411 .. 0.82

  Alignments for each domain:
  == domain 1    score: 115.0 bits;  conditional E-value: 1.6e-36
  TIGR00518   2 eiGvpkeiknnefrvaltpagvaellsrGhevlveeGaGvGsgfedeaykaaGaelvatakqvwdaelvlkvkeplpeeyeylrkgkvlftylhlaaereltealldsGvtaiayetv..eeadg.alpllapmsevaGrlaaqvGaqylektkGGrGvllgGvpGveagkvtiiGgGvvGtnaaklavGlGatvtildinv...drlrqldelf...............gsriktrysnave..iedavkeadlligavlipGakapklvseelvkqmkpGavivdvaidqGGivetvrvttydqptyakhevvhyavanmpgavpktstialtnatlpyvlkla 324
                +iGvpke+   e rva tp +va+l+++G  v v +GaG+ + f+d+ay a+Ga +v++ ++++ a lv kv  p pee + +   ++l++++  a ++el e l+ +  t  a + +   +++g a+  l+  +++aG  a+   ++ + +   G+    g vp   ++kv ++GgGv+G  a + a  +Ga v ++d+ +   ++ + l+++f               +++++  + +a +  +   ++e d++i++   p +   klv e +vk +kpG+v vd+a   GG v t   t  d+   + ++v  ++ +++ +   +ts++  +n  ++++l   
  MMETSP1137-20121227|388_1  35 TIGVPKETVPLERRVAQTPESVAKLVKEGFVVRVAKGAGERADFNDSAYVASGASIVSQ-EEAFGASLVTKVMGPTPEEAKMI-GDRMLLSFIFPAQNKELLEQLQAQKATVFAMDCIprTLSRGqAFDALSSQANIAGYRAVIEASNVFGRFFAGQMTAAGKVP---PAKVLVLGGGVAGLAAVQTAKNMGAVVRLFDVRAavkEQAQSLGAEFlevdheesgeggggyAKEMSKEWHAAANamLLKQMEEVDIVITTXAHPWQAGAKLVDETMVKALKPGSVTVDLAASAGGNVAT---TVKDKAIVTPNGVTCIGYTDLNSRLAQTSSTLYANNQMKWILSAG 372
                79******************************************************986.789****************8765.678999************************9977323345526899************99999999999999977666666...89******************************87222345558888733333333222111112233333333322245678899*****************************************8875...7899999999******************************99754 PP

>> TIGR03366  HpnZ_proposed: putative phosphonate catabolism associated alcohol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.0   1.1     2e-09     1e-06     147     213 ..     189     254 ..     174     284 .. 0.86

  Alignments for each domain:
  == domain 1    score: 26.0 bits;  conditional E-value: 2e-09
  TIGR03366 147 aleaagdlegrrvlvlGaGmLGLtaaaaaeerGasrviavDpsaeRrelaaafGaealaeeeelaev 213
                 + aag++  ++vlvlG G+ GL+a+ +a+++Ga  v  +D+ a+ +e+a+++Gae l  ++e++ +
  MMETSP1137-20121227|388_1 189 QMTAAGKVPPAKVLVLGGGVAGLAAVQTAKNMGA-VVRLFDVRAAVKEQAQSLGAEFLEVDHEESGE 254
                5789999999************************.599*****************988777666554 PP

>> TIGR03201  dearomat_had: 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.0     0.026        13      18      96 ..      56     136 ..      43     157 .. 0.72
   2 !   17.6   0.8   6.6e-07   0.00034     169     255 ..     200     294 ..     185     329 .. 0.79

  Alignments for each domain:
  == domain 1    score: 2.5 bits;  conditional E-value: 0.026
  TIGR03201  18 iaelgagevvvkva.GcG..vchtdldyyydgvrtnhalplalGheisGrviqagagaaslvGkavivpavipcGecelcks 96 
                +a+l  +  vv+va G G      d  y  +g  +  +   a+G  +  +v+    ++a+++G  ++++ ++p  + el ++
  MMETSP1137-20121227|388_1  56 VAKLVKEGFVVRVAkGAGerADFNDSAYVASG-ASIVSQEEAFGASLVTKVMGPTPEEAKMIGDRMLLSFIFPAQNKELLEQ 136
                56666667777777333311223344444444.44555667999999*****9999*****************999998765 PP

  == domain 2    score: 17.6 bits;  conditional E-value: 6.6e-07
  TIGR03201 169 lviviGvGGvGgyavqvakalGaavvaidideeklemvkkaGadlilnpkdis.......arevkkaikafakarGlrst.ewkilevsGskpGq 255
                 v+v+G G  G  avq+ak +Ga v   d+  +  e  ++ Ga+++   ++ s       a+e+ k+ +a a a  l+   e  i+ ++ ++p q
  MMETSP1137-20121227|388_1 200 KVLVLGGGVAGLAAVQTAKNMGAVVRLFDVRAAVKEQAQSLGAEFLEVDHEESgeggggyAKEMSKEWHAAANAMLLKQMeEVDIVITTXAHPWQ 294
                47888877778889******************************987777776333333357888888888887777765456666666666555 PP

>> TIGR02819  fdhA_non_GSH: formaldehyde dehydrogenase, glutathione-independent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.7   0.6   5.3e-08   2.7e-05     168     243 ..     176     251 ..     163     256 .. 0.86
   2 ?   -3.6   0.1       1.3   6.9e+02     180     192 ..     317     329 ..     294     358 .. 0.43

  Alignments for each domain:
  == domain 1    score: 20.7 bits;  conditional E-value: 5.3e-08
  TIGR02819 168 tmlsdilptgyhgavt.agvktgstvyiagagpvglaaaasarllgaavvivgdlneerlaqarsfgcetvdlkkda 243
                   s+++   + g +t ag  + + v + g g  glaa ++a+ +ga  v + d+ ++   qa+s+g e +++ +++
  MMETSP1137-20121227|388_1 176 IEASNVFGRFFAGQMTaAGKVPPAKVLVLGGGVAGLAAVQTAKNMGAV-VRLFDVRAAVKEQAQSLGAEFLEVDHEE 251
                55689999999999883588899***********************85.6678*****************9998765 PP

  == domain 2    score: -3.6 bits;  conditional E-value: 1.3
  TIGR02819 180 gavtagvktgstv 192
                 a +ag ++ +tv
  MMETSP1137-20121227|388_1 317 LAASAGGNVATTV 329
                2333333333333 PP

>> TIGR02352  thiamin_ThiO: glycine oxidase ThiO
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.9   1.1   1.9e-05    0.0095       1      44 [.     201     245 ..     201     255 .. 0.87

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 1.9e-05
  TIGR02352   1 vlviGgGviGlsvAveLakrghkvtllekd.evgsgAskaAaGmL 44 
                vlv+GgGv Gl+    +++ g+ v+l++ +  v+++A + +a  L
  MMETSP1137-20121227|388_1 201 VLVLGGGVAGLAAVQTAKNMGAVVRLFDVRaAVKEQAQSLGAEFL 245
                79**********999*************99788999988877555 PP

>> TIGR03197  MnmC_Cterm: tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.9   0.5   3.6e-05     0.018       1      38 [.     200     237 ..     200     245 .. 0.92

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 3.6e-05
  TIGR03197   1 kvavIGaGiAgaalalsLarrGvqvtllekdeklaqgA 38 
                kv+v+G+G+Ag+a++++ ++ G+ v l++ ++++ ++A
  MMETSP1137-20121227|388_1 200 KVLVLGGGVAGLAAVQTAKNMGAVVRLFDVRAAVKEQA 237
                589**************************999888777 PP

>> TIGR02853  spore_dpaA: dipicolinic acid synthetase, A subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.3      0.16        81     152     179 ..     199     226 ..     189     251 .. 0.74
   2 ?   11.0   0.1   7.5e-05     0.039     194     253 ..     266     331 ..     255     338 .. 0.78

  Alignments for each domain:
  == domain 1    score: 0.1 bits;  conditional E-value: 0.16
  TIGR02853 152 srvlvlGlGrtGktiarllsalgakvsv 179
                ++vlvlG G  G +  ++ + +ga v  
  MMETSP1137-20121227|388_1 199 AKVLVLGGGVAGLAAVQTAKNMGAVVRL 226
                6788888888888888888888877754 PP

  == domain 2    score: 11.0 bits;  conditional E-value: 7.5e-05
  TIGR02853 194 glepvelkeleekvaeiDivintiP......alvltkdvlsklpkhaviiDlaskPGGtDfeyakk 253
                 +++     l ++++e+Divi t        a+++++ +++ l+  +v +Dla+  GG   +  k 
  MMETSP1137-20121227|388_1 266 EWHAAANAMLLKQMEEVDIVITTXAhpwqagAKLVDETMVKALKPGSVTVDLAASAGGNVATTVKD 331
                55566667788999********974223333799***********************976666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (415 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       260  (0.0633837); expected 82.0 (0.02)
Passed bias filter:                      137  (0.0333983); expected 82.0 (0.02)
Passed Vit filter:                        34  (0.00828864); expected 4.1 (0.001)
Passed Fwd filter:                         8  (0.00195027); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.43u 0.17s 00:00:00.60 Elapsed: 00:00:00.69
# Mc/sec: 793.85
//
Query:       MMETSP1137-20121227|389_1  [L=215]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (215 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        73  (0.0177962); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.15s 00:00:00.35 Elapsed: 00:00:00.46
# Mc/sec: 616.91
//
Query:       MMETSP1137-20121227|390_1  [L=182]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.7e-06   25.5   0.0    2.4e-06   25.0   0.0    1.2  1  TIGR02705 nudix_YtkD: nucleoside triphosphatase YtkD
    0.00039   18.3   0.0    0.00046   18.0   0.0    1.3  1  TIGR00586 mutt: mutator mutT protein


Domain annotation for each model (and alignments):
>> TIGR02705  nudix_YtkD: nucleoside triphosphatase YtkD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.0   0.0   1.2e-09   2.4e-06      49      79 ..      61      91 ..      39     102 .. 0.89

  Alignments for each domain:
  == domain 1    score: 25.0 bits;  conditional E-value: 1.2e-09
  TIGR02705 49 fPGGkveegetskeaaiRevleetGaivkel 79
                PGG  e ge++ e a+Rev+eetG  +k l
  MMETSP1137-20121227|390_1 61 LPGGSLELGESTLEGAVREVWEETGLPSKAL 91
               7************************877665 PP

>> TIGR00586  mutt: mutator mutT protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.0   2.3e-07   0.00046      33      63 ..      58      88 ..      44     158 .. 0.91

  Alignments for each domain:
  == domain 1    score: 18.0 bits;  conditional E-value: 2.3e-07
  TIGR00586 33 klefPGGkieaGetpeqavvrelqeevgita 63
                +  PGG +e Ge + +  vre+ ee g+ +
  MMETSP1137-20121227|390_1 58 MWSLPGGSLELGESTLEGAVREVWEETGLPS 88
               6999**********************99865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (182 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        65  (0.0158459); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.16u 0.14s 00:00:00.30 Elapsed: 00:00:00.33
# Mc/sec: 727.94
//
Query:       MMETSP1137-20121227|391_1  [L=123]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (123 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       117  (0.0285227); expected 82.0 (0.02)
Passed bias filter:                       99  (0.0241346); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.18s 00:00:00.32 Elapsed: 00:00:00.31
# Mc/sec: 523.70
//
Query:       MMETSP1137-20121227|393_1  [L=34]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (34 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        43  (0.0104827); expected 82.0 (0.02)
Passed bias filter:                       38  (0.00926377); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.13s 00:00:00.23 Elapsed: 00:00:00.23
# Mc/sec: 195.11
//
Query:       MMETSP1137-20121227|394_1  [L=213]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.5e-09   32.9   7.0    3.3e-08   29.7   4.8    2.1  1  TIGR02917 PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein
    3.3e-06   23.4   4.9    4.1e-06   23.1   3.4    1.1  1  TIGR03939 PGA_TPR_OMP: poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA
      7e-06   23.7   5.4       0.02   12.5   0.1    2.9  3  TIGR02552 LcrH_SycD: type III secretion low calcium response chaperone LcrH/SycD
    8.9e-05   19.1   0.1    0.00018   18.1   0.0    1.5  1  TIGR00990 3a0801s09: mitochondrial precursor proteins import receptor
    0.00017   20.1   4.5       0.82    8.1   0.3    3.2  3  TIGR02795 tol_pal_ybgF: tol-pal system protein YbgF
    0.00035   18.0   0.5    0.00035   18.0   0.3    2.5  2  TIGR02521 type_IV_pilW: type IV pilus biogenesis/stability protein PilW


Domain annotation for each model (and alignments):
>> TIGR02917  PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.7   4.8   4.8e-11   3.3e-08     192     357 ..       5     165 ..       2     169 .. 0.87

  Alignments for each domain:
  == domain 1    score: 29.7 bits;  conditional E-value: 4.8e-11
  TIGR02917 192 nvdAllLkgdlllssgnieeAlaayrkaielkpnaiaallalatilleegefeeAekkadallkkapnspkaaylkAlvdfqkkkfedAretlqaalksapeylpalllaGaseyqlgeleqAeqylnqilkaaPnshqArrllAaiqLkegkvdeaiatlspale 357
                +++ l ++g+ +  +g+   A+  y++a++l+p++   l +++ +ll++g+ eeA ++a   +   p+ pk++   +   ++ +k+++A ++ +aal   p+       +  ++ +  +  +A++ +++ l  a  +  Ar+ +A+  L  gk++ea+++ + al+
  MMETSP1137-20121227|394_1   5 EAENLRMQGNTAIQKGDASTAATLYTEALQLEPDNHLLLSNRSLALLRLGKDEEACADARRCVCXCPEWPKGHSRLGAALYSLGKHAEAVKAYEAALALSPDDT-----GVKAALEDAKQAAARSSIEAQLRPAVLDFAARKQAASALLSAGKFAEAAKEYEGALR 165
                56677889999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999966.....333445556667789999999999999999999999999999999999988777665 PP

>> TIGR03939  PGA_TPR_OMP: poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.1   3.4     6e-09   4.1e-06     102     270 ..      22     177 ..       5     207 .. 0.71

  Alignments for each domain:
  == domain 1    score: 23.1 bits;  conditional E-value: 6e-09
  TIGR03939 102 wdkAlelyrkllqrdPknpdlllGlaltladagkdeeAlkalkelkerfpsdaerlealaYvlraaedsldalaaiqqalrlePdnkellkelveiltrlgapalaarlakqhpelftdeekrrleldqaaelvrlgekasrsekerfaladrAladlqalldkvgpqa 270
                 ++A++ly ++lq +P n  ll+   l+l+  gkdeeA + +++ +   p+  +  + l+ +l +++++++a +a++ al+l+Pd++ + +    +l++ +++a+ +++++q +    ++     + ++a+ l+  g+ a+ +++      + Al  +++ll k+ p++
  MMETSP1137-20121227|394_1  22 ASTAATLYTEALQLEPDNHLLLSNRSLALLRLGKDEEACADARRCVCXCPEWPKGHSRLGAALYSLGKHAEAVKAYEAALALSPDDTGVKA----ALEDAKQAAARSSIEAQLR---PAVLDFAARKQAASALLSAGKFAEAAKE-----YEGALRAMDELLGKL-PER 177
                579***********************************************99999999999*************************75554....4455555555444444422...2222222222222223333322222222.....345555566666666.544 PP

>> TIGR02552  LcrH_SycD: type III secretion low calcium response chaperone LcrH/SycD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.5   0.1   2.9e-05      0.02      62     118 ..      16      72 ..      11      78 .. 0.89
   2 !   12.2   0.1   3.5e-05     0.024      57      86 ..      79     108 ..      75     120 .. 0.91
   3 ?    0.2   0.1      0.17   1.2e+02      56      71 ..     148     163 ..     128     182 .. 0.61

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 2.9e-05
  TIGR02552  62 lqalkeyeeAiaaYalaaaldlddprpvyhaaecllalgekeeAlkaLklaieiaee 118
                  ++++ ++A+  Y+ a++l++d++  +  ++  ll lg+ eeA+++ ++++  + e
  MMETSP1137-20121227|394_1  16 AIQKGDASTAATLYTEALQLEPDNHLLLSNRSLALLRLGKDEEACADARRCVCXCPE 72 
                56788899*************************************999988887766 PP

  == domain 2    score: 12.2 bits;  conditional E-value: 3.5e-05
  TIGR02552  57 gLaaclqalkeyeeAiaaYalaaaldlddp 86 
                +L+a+l  l++++eA++aY++a+al++dd 
  MMETSP1137-20121227|394_1  79 RLGAALYSLGKHAEAVKAYEAALALSPDDT 108
                79*************************985 PP

  == domain 3    score: 0.2 bits;  conditional E-value: 0.17
  TIGR02552  56 lgLaaclqalkeyeeA 71 
                l+ +    a+keye+A
  MMETSP1137-20121227|394_1 148 LSAGKFAEAAKEYEGA 163
                2222223333333333 PP

>> TIGR00990  3a0801s09: mitochondrial precursor proteins import receptor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.0   2.6e-07   0.00018     127     217 ..       6      97 ..       2     155 .. 0.87

  Alignments for each domain:
  == domain 1    score: 18.1 bits;  conditional E-value: 2.6e-07
  TIGR00990 127 aaklkekGnkayrnkdfdkaielyskalllkedP.vyysnraacynaladlekvvedttaaleldpdyvkalnrranaydqlgkyadalldl 217
                a +l+ +Gn a ++ d   a  ly+ al+l +d  +  snr+     l++ e+  +d+ + +   p++ k   r  +a   lgk+a+a+   
  MMETSP1137-20121227|394_1   6 AENLRMQGNTAIQKGDASTAATLYTEALQLEPDNhLLLSNRSLALLRLGKDEEACADARRCVCXCPEWPKGHSRLGAALYSLGKHAEAVKAY 97 
                678999**************************973679*************************************************98655 PP

>> TIGR02795  tol_pal_ybgF: tol-pal system protein YbgF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.3   0.0    0.0089       6.1      45      87 ..      12      58 ..       2      68 .. 0.75
   2 !    7.1   0.2    0.0025       1.7      44      75 ..      79     110 ..      71     127 .. 0.79
   3 !    8.1   0.3    0.0012      0.82      65     111 ..     133     179 ..     113     185 .. 0.80

  Alignments for each domain:
  == domain 1    score: 5.3 bits;  conditional E-value: 0.0089
  TIGR02795 45 lGealyakkkykdAakaflevvkkypks....ekapdallklgeslq 87
                G++ ++k++ + Aa+ + e+++  p++    + ++ all+lg+  +
  MMETSP1137-20121227|394_1 12 QGNTAIQKGDASTAATLYTEALQLEPDNhlllSNRSLALLRLGKDEE 58
               599999****************9999872333456667777766544 PP

  == domain 2    score: 7.1 bits;  conditional E-value: 0.0025
  TIGR02795  44 wlGealyakkkykdAakaflevvkkypkseka 75 
                 lG aly+ +k ++A ka++++++  p+++ +
  MMETSP1137-20121227|394_1  79 RLGAALYSLGKHAEAVKAYEAALALSPDDTGV 110
                58999999999999999999999887776544 PP

  == domain 3    score: 8.1 bits;  conditional E-value: 0.0012
  TIGR02795  65 vvkkypksekapdallklgeslqelgqkekAkktlqevikrYPkssa 111
                +v ++   ++a+ all  g+ +++ ++ e A + ++e+  + P+ +a
  MMETSP1137-20121227|394_1 133 AVLDFAARKQAASALLSAGKFAEAAKEYEGALRAMDELLGKLPERDA 179
                56677888999999999999999999999999999999988888766 PP

>> TIGR02521  type_IV_pilW: type IV pilus biogenesis/stability protein PilW
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.3   5.2e-07   0.00035      32     128 ..       8     103 ..       2     132 .. 0.85
   2 ?   -0.5   1.3      0.23   1.5e+02      48      94 ..     120     166 ..     111     170 .. 0.65

  Alignments for each domain:
  == domain 1    score: 18.0 bits;  conditional E-value: 5.2e-07
  TIGR02521  32 kirvqLaleYleqgdlekAkenlekAleldpkdadanlalAlyyqqlgelekAeesfrkAltlkpnngdvlNNYGtFLcqqkkyeeAeqqfeaAied 128
                + r+q + + +++gd+ +A     +Al+l+p++    + + l++ +lg++e+A +  r+ +   p+ ++ +   G+ L++ +k  eA + +eaA++ 
  MMETSP1137-20121227|394_1   8 NLRMQ-GNTAIQKGDASTAATLYTEALQLEPDNHLLLSNRSLALLRLGKDEEACADARRCVCXCPEWPKGHSRLGAALYSLGKHAEAVKAYEAALAL 103
                55555.5555899*********************************************************************************863 PP

  == domain 2    score: -0.5 bits;  conditional E-value: 0.23
  TIGR02521  48 ekAkenlekAleldpkdadanlalAlyyqqlgelekAeesfrkAltl 94 
                ++A+ ++e  l  +  d  a +  A ++ + g+  +A+++++ Al+ 
  MMETSP1137-20121227|394_1 120 AAARSSIEAQLRPAVLDFAARKQAASALLSAGKFAEAAKEYEGALRA 166
                55666666666666666666666677777777777777777777764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (213 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       109  (0.0265724); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                        19  (0.00463189); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.32u 0.17s 00:00:00.49 Elapsed: 00:00:01.21
# Mc/sec: 232.34
//
Query:       MMETSP1137-20121227|395_1  [L=170]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (170 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        22  (0.00536324); expected 82.0 (0.02)
Passed bias filter:                       22  (0.00536324); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.14s 00:00:00.30 Elapsed: 00:00:00.28
# Mc/sec: 801.36
//
Query:       MMETSP1137-20121227|396_1  [L=91]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (91 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        69  (0.0168211); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.13s 00:00:00.26 Elapsed: 00:00:00.25
# Mc/sec: 480.44
//
Query:       MMETSP1137-20121227|397_1  [L=365]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   1.2e-108  362.0   0.0   1.4e-108  361.8   0.0    1.0  1  TIGR00232 tktlase_bact: transketolase
    4.3e-10   36.5   0.0    5.3e-10   36.3   0.0    1.1  1  TIGR00204 dxs: 1-deoxy-D-xylulose-5-phosphate synthase


Domain annotation for each model (and alignments):
>> TIGR00232  tktlase_bact: transketolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  361.8   0.0  6.8e-112  1.4e-108     298     653 ..       2     349 ..       1     350 [. 0.93

  Alignments for each domain:
  == domain 1    score: 361.8 bits;  conditional E-value: 6.8e-112
  TIGR00232 298 gekaeeewneklakykkkypelakeferrlsgelpadyekklkefkakkkalatRkaskevlnalakelpellggsaDlarsnltklkeskelk.enalgnyiryGvRefamgaimngialhGglkpygatFlvFvdYakpaiRlaaLmklkviyvythDsigvGeDGpthqpveqlaslRaipnlsvwRPaDeketaaayklalesqdaptvlilsRqnlpqleesslekvlkGgYvlkdskn...PdiiliatGsevelaveaakkLakenikvrvvslpsidlldkqdeeYresvlpanvtllaieasaaleWykyaklegavlgidsfGesakgdkvfekfgFtvenvvakakkll 653
                g++++++w++++a y  ++p+la+eferr++gelpa  e  ++ +       atR++s++vln+la+ +p+l+ggsaDl++snltk+k++++++ +++ g+yir+GvRe+am+a++ng+a++G ++p++atFl+F+ Ya +a+R++aL++l viyv+thDsig+GeDGpthqpve l  lRa+pnl ++RPaD++e+a ay +ale  d +      R   + l +s +ekv+ G+Yv++   +   P+i+l+++Gsev+  +++a  L    +++++vs+p+++l+d+q+++Y+es++p++  +la+ea aa  W kya+ +   +g+ sfG+s++++ v ++fgFt env++kak+ll
  MMETSP1137-20121227|397_1   2 GAAKHAAWKALFACYSAAHPDLAAEFERRIKGELPAXLEVGAAVVD----PGATRQSSQQVLNKLAEAIPDLVGGSADLTPSNLTKFKGAVDFQaTTPEGRYIRFGVREHAMAALCNGMAAYGMVRPFCATFLNFIGYAIGAVRVSALSHLGVIYVATHDSIGLGEDGPTHQPVEMLLALRATPNLLTIRPADANEVAGAYAIALEXYDDAHR---DRALAAGLRQSGKEKVSLGAYVISAPPDgqaPQIVLVGSGSEVQT-LQSALPLL-SPLRIQLVSMPCWELFDNQSADYKESIFPKSTPVLAMEALAAEGWCKYAHSV---IGMRSFGASGPAKDVQKRFGFTTENVAEKAKELL 349
                678999******************************9988777665....68***************************************76526799***********************************************************************************************************9888764...677778899**************96433345************95.66666654.468899********************************************99...*******************************997 PP

>> TIGR00204  dxs: 1-deoxy-D-xylulose-5-phosphate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.3   0.0   2.6e-13   5.3e-10     338     511 ..      82     258 ..      41     312 .. 0.77

  Alignments for each domain:
  == domain 1    score: 36.3 bits;  conditional E-value: 2.6e-13
  TIGR00204 338 reGsgldklskkfPk.ryfdvaiaeqhavtlaaalaieGl.kPvvaiystflqraydqvvhdvaiqklpvllaidraGi.vGadGethqGlfdisylrsiPnlvlmaPkdenelkqmlvtaleydegpialryPrGnavgvelteeekleiGksellrkge....dilllgfGtlveeale 511
                ++  g +++++  P+ ry+  ++ e   ++l+ ++a  G+ +P+ a +  f+  a   v    a+++l v++      i +G+dG+thq +  +  lr+ Pnl+ + P d ne+  +  +ale  +++   r  r  a+g +   +ek+ +G   +  + +    +i+l+g G+ v++   
  MMETSP1137-20121227|397_1  82 TKFKGAVDFQATTPEgRYIRFGVREHAMAALCNGMAAYGMvRPFCATFLNFIGYAIGAV-RVSALSHLGVIYVATHDSIgLGEDGPTHQPVEMLLALRATPNLLTIRPADANEVAGAYAIALEXYDDAH--R-DRALAAGLRQSGKEKVSLGAYVISAPPDgqapQIVLVGSGSEVQTLQS 258
                44567788999999769********99999******999769**********9999876.556778888766544433336************************************999998776543..3.678888888888899999988887643322336888888888765444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (365 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        77  (0.0187713); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.31u 0.16s 00:00:00.47 Elapsed: 00:00:00.38
# Mc/sec: 1267.79
//
Query:       MMETSP1137-20121227|398_1  [L=360]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (360 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        84  (0.0204778); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.12s 00:00:00.40 Elapsed: 00:00:00.40
# Mc/sec: 1187.90
//
Query:       MMETSP1137-20121227|399_1  [L=92]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.1e-05   23.3   0.7    1.2e-05   23.1   0.5    1.2  1  TIGR03193 4hydroxCoAred: 4-hydroxybenzoyl-CoA reductase, gamma subunit
    0.00067   15.6   1.2    0.00071   15.5   0.8    1.0  1  TIGR03311 Se_dep_Molyb_1: selenium-dependent molybdenum hydroxylase 1
     0.0021   14.7   0.2     0.0023   14.6   0.1    1.1  1  TIGR02160 PA_CoA_Oxy5: phenylacetate-CoA oxygenase/reductase, PaaK subunit
     0.0023   15.3   2.1      0.003   14.9   1.4    1.3  1  TIGR03198 pucE: xanthine dehydrogenase E subunit
  ------ inclusion threshold ------
      0.012   12.9   0.4      0.013   12.7   0.3    1.1  1  TIGR00384 dhsB: succinate dehydrogenase and fumarate reductase iron-sulfur protein
      0.021   12.5   0.8      0.031   11.9   0.5    1.4  1  TIGR02008 fdx_plant: ferredoxin [2Fe-2S]


Domain annotation for each model (and alignments):
>> TIGR03193  4hydroxCoAred: 4-hydroxybenzoyl-CoA reductase, gamma subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.1   0.5   1.7e-08   1.2e-05      26      61 ..      36      71 ..      15      88 .. 0.88

  Alignments for each domain:
  == domain 1    score: 23.1 bits;  conditional E-value: 1.7e-08
  TIGR03193 26 rdvvgltgvkqgcdggecgactvlvdgeprlacltl 61
                +vvg +g   gc  gecg+c   +dg+ + +c++ 
  MMETSP1137-20121227|399_1 36 MKVVGSSGLIYGCKTGECGTCEAKLDGRVVRTCVAK 71
               5799*****************************975 PP

>> TIGR03311  Se_dep_Molyb_1: selenium-dependent molybdenum hydroxylase 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.8     1e-06   0.00071      32      62 ..      45      75 ..      30      89 .. 0.86

  Alignments for each domain:
  == domain 1    score: 15.5 bits;  conditional E-value: 1e-06
  TIGR03311 32 knGcaeGacGactvlvnGkavkaclftvekl 62
                 Gc+ G cG+c   ++G+ v++c++++ k 
  MMETSP1137-20121227|399_1 45 IYGCKTGECGTCEAKLDGRVVRTCVAKLPKK 75
               57***********************998775 PP

>> TIGR02160  PA_CoA_Oxy5: phenylacetate-CoA oxygenase/reductase, PaaK subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.1   3.4e-06    0.0023     270     316 ..      22      63 ..       5      74 .. 0.70

  Alignments for each domain:
  == domain 1    score: 14.6 bits;  conditional E-value: 3.4e-06
  TIGR02160 270 dGlsreislsaedesvldaalraradlPfackgGvcgtcrakvleGk 316
                dG +  +++ ++ +s++ +     + l + ck+G cgtc ak+ +G+
  MMETSP1137-20121227|399_1  22 DGIK--TVQGTAGQSMMKVVGS--SGLIYGCKTGECGTCEAKL-DGR 63 
                6655..4445556677666544..4589*************96.555 PP

>> TIGR03198  pucE: xanthine dehydrogenase E subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   1.4   4.4e-06     0.003      34      62 ..      42      70 ..      26      85 .. 0.86

  Alignments for each domain:
  == domain 1    score: 14.9 bits;  conditional E-value: 4.4e-06
  TIGR03198 34 tgtkvscgigrcgacavlvdgkvanacll 62
               +g    c+ g cg+c   +dg+v+ +c+ 
  MMETSP1137-20121227|399_1 42 SGLIYGCKTGECGTCEAKLDGRVVRTCVA 70
               566778*********************85 PP

>> TIGR00384  dhsB: succinate dehydrogenase and fumarate reductase iron-sulfur protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.3     2e-05     0.013      48      84 ..      47      82 ..      33      90 .. 0.84

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 2e-05
  TIGR00384 48 sCReaiCGscavkvngkpkLACktkvedleqllklii 84
                C+++ CG c  k++g+ +  C +k+ ++  ++k+ +
  MMETSP1137-20121227|399_1 47 GCKTGECGTCEAKLDGRVVRTCVAKLPKKP-QVKIDV 82
               6************************99854.466444 PP

>> TIGR02008  fdx_plant: ferredoxin [2Fe-2S]
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.5   4.5e-05     0.031      14      54 ..      24      62 ..      13      77 .. 0.73

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 4.5e-05
  TIGR02008 14 eetievpddeyildaaeeeGidlpyscraGacstcaGkvke 54
                +t++    + ++ +   +G  l y c++G c tc  k+  
  MMETSP1137-20121227|399_1 24 IKTVQGTAGQSMMKVVGSSG--LIYGCKTGECGTCEAKLDG 62
               55666666666666666666..68***********999864 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (92 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       103  (0.0251097); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                        19  (0.00463189); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.17u 0.16s 00:00:00.33 Elapsed: 00:00:00.47
# Mc/sec: 258.36
//
Query:       MMETSP1137-20121227|400_1  [L=128]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (128 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       121  (0.0294978); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.15s 00:00:00.34 Elapsed: 00:00:00.32
# Mc/sec: 527.96
//
Query:       MMETSP1137-20121227|401_1  [L=106]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (106 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        85  (0.0207216); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.17s 00:00:00.32 Elapsed: 00:00:00.46
# Mc/sec: 304.15
//
Query:       MMETSP1137-20121227|403_1  [L=164]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (164 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        38  (0.00926377); expected 82.0 (0.02)
Passed bias filter:                       38  (0.00926377); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.15s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 773.08
//
Query:       MMETSP1137-20121227|405_1  [L=304]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (304 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        53  (0.0129205); expected 82.0 (0.02)
Passed bias filter:                       41  (0.00999512); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.16s 00:00:00.40 Elapsed: 00:00:00.35
# Mc/sec: 1146.42
//
Query:       MMETSP1137-20121227|407_1  [L=145]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (145 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       118  (0.0287665); expected 82.0 (0.02)
Passed bias filter:                      111  (0.02706); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.13s 00:00:00.30 Elapsed: 00:00:00.30
# Mc/sec: 637.95
//
Query:       MMETSP1137-20121227|408_1  [L=142]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.7e-09   33.9   0.0    7.8e-09   33.5   0.0    1.2  1  TIGR01068 thioredoxin: thioredoxin
    6.7e-05   21.0   0.0    9.3e-05   20.5   0.0    1.2  1  TIGR01126 pdi_dom: protein disulfide-isomerase domain
     0.0072   13.7   0.1     0.0079   13.6   0.0    1.0  1  TIGR01130 ER_PDI_fam: protein disulfide isomerases


Domain annotation for each model (and alignments):
>> TIGR01068  thioredoxin: thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.5   0.0   5.7e-12   7.8e-09      12      98 ..      31     116 ..      22     119 .. 0.85

  Alignments for each domain:
  == domain 1    score: 33.5 bits;  conditional E-value: 5.7e-12
  TIGR01068  12 ssdklvlvDfwAeWCgpCkmlaPvleelakele.ekvkvvKlnvdeeqeiaakygirsiPtlllfkngkevkrvvGakpkaalkelie 98 
                ++d l +++ + +WCg+  +++ ++  l +el+ +k+k+  +n d+ +++ +ky  +s P  l++kng++ + + G++   al++ i+
  MMETSP1137-20121227|408_1  31 EKDFLHIIEVYVTWCGSSLAITSTFSRLIAELQgRKIKFFNVNADDIDDL-KKYRSTSKPHFLVYKNGEQLEVIEGVNV-PALQKSIT 116
                5566789*******************9988876269**********9998.68999********************987.45666665 PP

>> TIGR01126  pdi_dom: protein disulfide-isomerase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   0.0   6.8e-08   9.3e-05      15      85 ..      34     100 ..      24     119 .. 0.85

  Alignments for each domain:
  == domain 1    score: 20.5 bits;  conditional E-value: 6.8e-08
  TIGR01126  15 kdvlvefyaPWCGhCkklaPeyeklakelkkeeekvkiakvdataekelaskfkvsgfPtlkffkkgkkep 85 
                   ++e y  WCG   +++ ++ +l +el+ +  k+k  +v+a+  ++l +k+  ++ P   ++k+g++  
  MMETSP1137-20121227|408_1  34 FLHIIEVYVTWCGSSLAITSTFSRLIAELQGR--KIKFFNVNADDIDDL-KKYRSTSKPHFLVYKNGEQ-L 100
                45689*************************86..5*********99998.69999999**999999996.3 PP

>> TIGR01130  ER_PDI_fam: protein disulfide isomerases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   0.0   5.7e-06    0.0079     361     457 ..      29     124 ..      22     142 .] 0.74

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 5.7e-06
  TIGR01130 361 detKdVL..vefYApWCGHCkkLapiYeelaekykkeedvviakldata.NdvpefevegFPTilfvpagkksepvkyegdRtledlvkFikknatiele 457
                d +Kd L  +e+Y  WCG   ++++++ +l ++++   ++   +++a    d+++++ ++ P  l +++g++ e+++   + ++ +l k i+ +  + l 
  MMETSP1137-20121227|408_1  29 DAEKDFLhiIEVYVTWCGSSLAITSTFSRLIAELQGR-KIKFFNVNADDiDDLKKYRSTSKPHFLVYKNGEQLEVIE---GVNVPALQKSITDHMPEGLV 124
                6678876559*************************98.788888888642677779999999999999999977765...44666666666666555444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (142 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       101  (0.0246221); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.17u 0.16s 00:00:00.33 Elapsed: 00:00:00.27
# Mc/sec: 694.16
//
Query:       MMETSP1137-20121227|409_1  [L=255]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.5e-72  242.2   0.0    1.7e-72  242.0   0.0    1.0  1  TIGR02729 Obg_CgtA: Obg family GTPase CgtA
    1.2e-15   55.4   0.4    1.3e-12   45.3   0.0    3.2  2  TIGR00092 TIGR00092: GTP-binding protein YchF
      2e-12   44.5   0.0    5.5e-12   43.1   0.0    1.7  2  TIGR03156 GTP_HflX: GTP-binding protein HflX
    9.6e-10   36.1   0.0    1.2e-09   35.8   0.0    1.1  1  TIGR00436 era: GTP-binding protein Era
    1.2e-07   29.5   0.0    7.2e-07   27.0   0.0    2.0  1  TIGR00231 small_GTP: small GTP-binding protein domain
    2.8e-06   24.4   0.0     0.0033   14.3   0.0    2.0  2  TIGR03594 GTPase_EngA: ribosome-associated GTPase EngA
    3.6e-06   24.4   0.2      0.023   11.9   0.1    2.1  2  TIGR03596 GTPase_YlqF: ribosome biogenesis GTP-binding protein YlqF
    9.3e-06   22.5   0.0    1.3e-05   22.1   0.0    1.2  1  TIGR03918 GTP_HydF: [FeFe] hydrogenase H-cluster maturation GTPase HydF
    1.6e-05   22.5   0.0      0.048   11.2   0.0    2.2  2  TIGR03598 GTPase_YsxC: ribosome biogenesis GTP-binding protein YsxC
    0.00036   17.2   0.0    0.00044   16.9   0.0    1.2  1  TIGR00437 feoB: ferrous iron transport protein B
     0.0017   15.9   0.3       0.03   11.8   0.2    2.1  1  TIGR03771 anch_rpt_ABC: anchored repeat-type ABC transporter, ATP-binding subunit
     0.0027   15.8   0.0      0.037   12.1   0.0    2.1  2  TIGR02528 EutP: ethanolamine utilization protein, EutP
     0.0051   13.7   0.0      0.011   12.6   0.0    1.6  1  TIGR00450 mnmE_trmE_thdF: tRNA modification GTPase TrmE
     0.0062   13.8   0.1      0.027   11.7   0.0    1.8  2  TIGR02315 ABC_phnC: phosphonate ABC transporter, ATP-binding protein
  ------ inclusion threshold ------
      0.027   10.9   0.0       0.04   10.3   0.0    1.2  1  TIGR03719 ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family


Domain annotation for each model (and alignments):
>> TIGR02729  Obg_CgtA: Obg family GTPase CgtA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  242.0   0.0   6.2e-75   1.7e-72      85     326 ..       3     246 ..       1     249 [. 0.95

  Alignments for each domain:
  == domain 1    score: 242.0 bits;  conditional E-value: 6.2e-75
  TIGR02729  85 vikvPvGtvvldeetgelladlteegqkllvakgGkgGlGNakfksstnraPrkaekGeegeerelkleLklladvglvGlpnaGkStllsavsaakpkiadYpFtTlvPnLGvv...eveeeksfvlaDiPgliegasegagLGleFLkHiertrvllhlidlseedekdpvedleviekeLkkyseeLaekpelvvlnkidllee.eeleellkelkeel.ekkvlaisaltkegleellkklle 326
                vi vP  + v+d++t+ ++ +l+e+gq+++va gG gG+GN +    ++  P+k+ +    e+r+l+l++ l+advgl+G pnaGkStll++v++a pk+adYpFtTlvPnLGv     v+  +++v  DiPgli+ga++g+gLGl FL+H er+r+llhl+d +++   dp+ d+e+i++eL  ys+ La+kp++vvl+k+dl++  +++ +ll++l+++  +k+v+ is+ +k +l el +++ +
  MMETSP1137-20121227|409_1   3 VILVPPNCLVVDTATNATIIELKEPGQRVVVAAGGVGGQGNGEVWRRSRSDPKKVVPPGGTERRRLELSMTLVADVGLIGHPNAGKSTLLRSVTRADPKVADYPFTTLVPNLGVCapsAVRPGRQMVWLDIPGLIDGAHSGRGLGLAFLRHTERCRLLLHLVDGESK---DPIGDFECINRELGLYSQLLARKPQVVVLTKVDLPSVaHKAPQLLESLRKAArHKRVICISSHSKVNLMELQQRTDS 246
                789*****************************************************99999*****************************************************9444466799****************************************999...***********************************987999999****9999899***************9998765 PP

>> TIGR00092  TIGR00092: GTP-binding protein YchF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.3   0.0   4.9e-15   1.3e-12       5     133 ..      78     182 ..      72     186 .. 0.84
   2 ?    4.1   0.1     0.016       4.5     195     261 ..     187     249 ..     179     255 .] 0.73

  Alignments for each domain:
  == domain 1    score: 45.3 bits;  conditional E-value: 4.9e-15
  TIGR00092   5 aGivGLpnvGkstlfqaitkaklgeaanyPfatiepntgvvnvpderldkLaeivksekvvpttlefvDiaGLvkGaskGeGLGnkfLaniRevdaivhvvRcfedddivhvegkvdPvrDlevineeL 133
                 G++G pn Gkstl +++t+a+  ++a+yPf+t+ pn gv   +  r         + +    ++  +Di GL+ Ga  G+GLG +fL +     +++h v + ++          dP+ D+e in+eL
  MMETSP1137-20121227|409_1  78 VGLIGHPNAGKSTLLRSVTRADP-KVADYPFTTLVPNLGVCAPSAVR---------PGR----QMVWLDIPGLIDGAHSGRGLGLAFLRHTERCRLLLHLVDGESK----------DPIGDFECINREL 182
                69********************9.9*************987644433.........332....58899*********************99999999999987444..........6777777777776 PP

  == domain 2    score: 4.1 bits;  conditional E-value: 0.016
  TIGR00092 195 nlLtakPilivanvseddlvnkenkllekvkeivaefkegdkvvlvsaeleselselkeeereeflk 261
                +lL  kP ++v+  ++ dl     + + + +e + +   +++v+ +s++   +l+el++ + +  l+
  MMETSP1137-20121227|409_1 187 QLLARKPQVVVL--TKVDLPSVA-HKAPQLLESLRKAARHKRVICISSHSKVNLMELQQRTDS-LLQ 249
                789999988775..555666643.34567777778888999***************9986544.344 PP

>> TIGR03156  GTP_HflX: GTP-binding protein HflX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.3         2   5.4e+02     138     149 ..      34      45 ..      23      47 .. 0.81
   2 !   43.1   0.0     2e-14   5.5e-12     186     348 ..      72     245 ..      60     248 .. 0.76

  Alignments for each domain:
  == domain 1    score: -2.9 bits;  conditional E-value: 2
  TIGR03156 138 qkgGiGtrGpGE 149
                  gG+G +G GE
  MMETSP1137-20121227|409_1  34 AAGGVGGQGNGE 45 
                579********9 PP

  == domain 2    score: 43.1 bits;  conditional E-value: 2e-14
  TIGR03156 186 ksevptvalvGYTNaGKstllnaltkaevlaedklFATLdpttrrlk...lpeeeevlltDTVGFirkL..PheLveaFkaTLeevaeadlllhvvDasdeeaeeqieaveevLe..elgaeeipvllvlNkidkle.....eeeleeleekk...eeavlvsAkkgegleeLleaie 348
                 + v  v+l+G  NaGKstll+++t+a+  ++d  F+TL p +  +    ++ +++++  D  G i      + L  aF   L  +++  lllh+vD  +++     e +++ L   +  ++++p+++vl k+d+ +      + le+l++ +   ++ +++s++++ +l eL+++ +
  MMETSP1137-20121227|409_1  72 MTLVADVGLIGHPNAGKSTLLRSVTRADPKVADYPFTTLVPNLGVCApsaVRPGRQMVWLDIPGLIDGAhsGRGLGLAF---LRHTERCRLLLHLVDGESKDPIGDFECINRELGlySQLLARKPQVVVLTKVDLPSvahkaPQLLESLRK-AarhKRVICISSHSKVNLMELQQRTD 245
                4557899**********************************987665111556679**********8541155677777...99***************9999999999888654113345678**********98876553222222222.22436799*************99866 PP

>> TIGR00436  era: GTP-binding protein Era
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.8   0.0   4.4e-12   1.2e-09       3     165 ..      78     250 ..      76     255 .] 0.79

  Alignments for each domain:
  == domain 1    score: 35.8 bits;  conditional E-value: 4.4e-12
  TIGR00436   3 vailGrpnvGKSTLlNkllgqkisivSpkaqTTrnrisgi....ltegasqiifiDtPGlhekkhklnellvkeirkalsevdlilfvvdsdeknke.d.elllekl....q.klkapvvlalnkldnk.ekdkllelidkeasllefkeiveisalkgenveelkaiveaklre 165
                v+++G+pn+GKSTLl +++ ++   v + + TT+    g+     + + +q++++D+PGl    h+    l  +  +  +   l+l +vd+++k    d e +  +l    q  + +p+v++l k+d     +k  +l++++++    k+++ is   + n+ el++ +   l++
  MMETSP1137-20121227|409_1  78 VGLIGHPNAGKSTLLRSVTRADPK-VADYPFTTLVPNLGVcapsAVRPGRQMVWLDIPGLIDGAHSGR-GLGLAFLRHTERCRLLLHLVDGESKDPIgDfECINRELglysQlLARKPQVVVLTKVDLPsVAHKAPQLLESLRKAARHKRVICISSHSKVNLMELQQRTDSLLQQ 250
                899*****************9987.57999999987666511115677799*********99999755.555666666799***********999887536666666222221245789999*****9966777778888899999999*****************999887776 PP

>> TIGR00231  small_GTP: small GTP-binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.0   0.0   2.6e-09   7.2e-07       5     154 ..      77     236 ..      75     246 .. 0.69

  Alignments for each domain:
  == domain 1    score: 27.0 bits;  conditional E-value: 2.6e-09
  TIGR00231   5 kivivGhvdvGKstLlnsllknkisiteskpgvtrdyvteqieedGkt..ykvnllDTaGqedfdairrlyvreverslevvdivilvldveegl.ekqtkeiiheakkk.....gvpiilvvnKiDlkd...dlktkvkslfaklnaepiielsaetgkn 154
                 ++++Gh+++GKstLl s ++ +  +++++p++t   +  ++    ++   ++  lD++G +d +   r    +  r  e + + ++++d e++    + + i++e+  +      +p ++v++K+Dl +   +  +   sl+++   +++i +s +   n
  MMETSP1137-20121227|409_1  77 DVGLIGHPNAGKSTLLRSVTRAD-PKVADYPFTTLVPNLGVCAPSAVRpgRQMVWLDIPGLIDGAHSGRGLGLAFLRHTERCRLLLHLVDGESKDpIGDFECINRELGLYsqllaRKPQVVVLTKVDLPSvahKAPQLLESLRKAARHKRVICISSHSKVN 236
                69*********************.9******9998776666554433333579999999999998888888888888888888888877776654135566666665543111116788999999999887654444444444444555566666555555 PP

>> TIGR03594  GTPase_EngA: ribosome-associated GTPase EngA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.0   1.2e-05    0.0033     176     199 ..      76      99 ..      40     111 .. 0.79
   2 !    8.3   0.0   0.00078      0.21     285     350 ..     190     252 ..     149     254 .. 0.81

  Alignments for each domain:
  == domain 1    score: 14.3 bits;  conditional E-value: 1.2e-05
  TIGR03594 176 ikiaiiGrpNvGKStLvNallgee 199
                  +++iG pN+GKStL+ ++++ +
  MMETSP1137-20121227|409_1  76 ADVGLIGHPNAGKSTLLRSVTRAD 99 
                468889999999999987776655 PP

  == domain 2    score: 8.3 bits;  conditional E-value: 0.00078
  TIGR03594 285 egkalvivvNKwDlvkdekeleelkkeleeklkflkfapivfiSAltgkgveklleaikevyesls 350
                + k+ v+v+ K+Dl + +++  +l ++l+   k +++ ++++iS +++ ++ +l +  +++ ++l+
  MMETSP1137-20121227|409_1 190 ARKPQVVVLTKVDLPSVAHKAPQLLESLR---KAARHKRVICISSHSKVNLMELQQRTDSLLQQLE 252
                57999*********955555555555555...6678899****************99999988876 PP

>> TIGR03596  GTPase_YlqF: ribosome biogenesis GTP-binding protein YlqF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.7   0.0    0.0002     0.054     122     153 ..      79     109 ..      62     140 .. 0.77
   2 !   11.9   0.1   8.3e-05     0.023      43     107 ..     186     253 ..     179     255 .] 0.85

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 0.0002
  TIGR03596 122 lvvGiPNvGKStliNrlakkkvakvgnkpgvT 153
                  +G PN GKStl+ + +++   kv++ p  T
  MMETSP1137-20121227|409_1  79 GLIGHPNAGKSTLLRS-VTRADPKVADYPFTT 109
                579**********976.556667888887665 PP

  == domain 2    score: 11.9 bits;  conditional E-value: 8.3e-05
  TIGR03596  43 eelvknkprlivlnkaDladpek.tkkwlkyfe..ekgkkalavnakkkkkvkkilkaikkllkekke 107
                ++l+++kp+++vl+k Dl + ++   ++l+ ++   ++k+++++++++k ++ ++ +  ++ll++ ++
  MMETSP1137-20121227|409_1 186 SQLLARKPQVVVLTKVDLPSVAHkAPQLLESLRkaARHKRVICISSHSKVNLMELQQRTDSLLQQLEQ 253
                57899*************98765156888999856677899*******************99998876 PP

>> TIGR03918  GTP_HydF: [FeFe] hydrogenase H-cluster maturation GTPase HydF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.1   0.0   4.7e-08   1.3e-05       9     169 ..      77     250 ..      71     255 .] 0.80

  Alignments for each domain:
  == domain 1    score: 22.1 bits;  conditional E-value: 4.7e-08
  TIGR03918   9 hialfGrrNaGKSsliNaltgqdvaivsdvpGtTtDp...vekamEllplGpvvliDTaGldDegeLGelRvektrevlektdlallvvdaeael.......eeleeelleelkekkipvivvlnkidlkeeeke.....keklekkkeeevvlvsakekegieelkealiellpe 169
                 ++l+G+ NaGKS+l+  +t+ d   v+d+p tT  p   v     + p   +v +D +Gl D ++ G+       +  e++ l l +vd e++         + e  l+++l ++k p +vvl+k+dl + +++     ++ ++++++++v+++s+++k ++ el+++  +ll++
  MMETSP1137-20121227|409_1  77 DVGLIGHPNAGKSTLLRSVTRADPK-VADYPFTTLVPnlgVCAPSAVRPGRQMVWLDIPGLIDGAHSGRGLGLAFLRHTERCRLLLHLVDGESKDpigdfecINRELGLYSQLLARK-PQVVVLTKVDLPSVAHKapqllESLRKAARHKRVICISSHSKVNLMELQQRTDSLLQQ 250
                689******************9987.789*****99844456667788888899***************99999999***********99886541111111455667778888776.9*********9987766555655566777889999*************9987666654 PP

>> TIGR03598  GTPase_YsxC: ribosome biogenesis GTP-binding protein YsxC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.5   0.0   0.00057      0.16      18      42 ..      75      99 ..      65     135 .. 0.86
   2 !   11.2   0.0   0.00017     0.048     129     183 ..     191     242 ..     146     245 .. 0.65

  Alignments for each domain:
  == domain 1    score: 9.5 bits;  conditional E-value: 0.00057
  TIGR03598 18 lpeiafaGrSNvGKSsliNaLtnrk 42
               ++++ ++G  N+GKS+l+ ++t+  
  MMETSP1137-20121227|409_1 75 VADVGLIGHPNAGKSTLLRSVTRAD 99
               67899*************9998765 PP

  == domain 2    score: 11.2 bits;  conditional E-value: 0.00017
  TIGR03598 129 kipvlvvltKaDklkkselkkalkkvkkelkkeeekvevllfSslkkegieelka 183
                + p +vvltK+D  + ++++ +l    ++l+k +++++v+++Ss++k ++ el++
  MMETSP1137-20121227|409_1 191 RKPQVVVLTKVDLPSVAHKAPQL---LESLRKAARHKRVICISSHSKVNLMELQQ 242
                4577899*****87765555444...444555555569************99987 PP

>> TIGR00437  feoB: ferrous iron transport protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.0   1.6e-06   0.00044       1     110 [.      82     202 ..      82     253 .. 0.70

  Alignments for each domain:
  == domain 1    score: 16.9 bits;  conditional E-value: 1.6e-06
  TIGR00437   1 GnpNvGKstlfnaLtgsnqkvgNwpGvTVekkegkl....elkgedieivDlPGiYsLttvsldEkvardyll.nekadLvvnvvdasn.........leRnLyltlQllelgiplilalNlvd 110
                G pN GKstl+  +t ++ kv+ +p +T     g         g+++   D+PG+ +            ++l   e+  L+++ vd +          ++R+L l  Qll   +p +++l +vd
  MMETSP1137-20121227|409_1  82 GHPNAGKSTLLRSVTRADPKVADYPFTTLVPNLGVCapsaVRPGRQMVWLDIPGLIDGAHSGR--GLGLAFLRhTERCRLLLHLVDGESkdpigdfecINRELGLYSQLLA-RKPQVVVLTKVD 202
                89*************************976666554111134689999999999876444333..5566666414667777777775422233333337777777777774.456666666666 PP

>> TIGR03771  anch_rpt_ABC: anchored repeat-type ABC transporter, ATP-binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.8   0.2   0.00011      0.03       9     182 ..      78     243 ..      70     251 .. 0.73

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 0.00011
  TIGR03771   9 lgllGpnGaGkttllrailglikvakGsvkvagkssrkgrreiGyv.pqrhefawdfpidveqtvlsGragliGllrrpkkadfaavadalervklteladrpvGelsGGqrqrvlvaralavkpslllldepftGldlpsqe....llvelfeelagegtailmtthdlaeavatcdr 182
                +gl+G   aGk+tllr++    + +      ++  ++ g +    v p r     d p  + +   sGr   + +lr +++         l+ v+    ++ p+G++   +r+  l ++ la kp++++l    t +dlps      +l+e +++ a +++ i +++h  ++ ++  +r
  MMETSP1137-20121227|409_1  78 VGLIGHPNAGKSTLLRSVTRADP-KVADYPFTTLVPNLGVCAPSAVrPGRQMVWLDIPGLIDG-AHSGRGLGLAFLRHTERCRL-----LLHLVD--GESKDPIGDFECINRELGLYSQLLARKPQVVVL----TKVDLPSVAhkapQLLESLRKAARHKRVICISSHSKVNLMELQQR 243
                78999888999999999877655.455566666678888888777735555444488865554.46899988989988876533.....344333..346789************************997....778888864222256777777788889999999999999887777 PP

>> TIGR02528  EutP: ethanolamine utilization protein, EutP
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.0      0.32        86       5      21 ..      80      96 ..      77     102 .. 0.84
   2 !   12.1   0.0   0.00013     0.037      86     139 ..     188     243 ..     179     246 .. 0.80

  Alignments for each domain:
  == domain 1    score: 1.2 bits;  conditional E-value: 0.32
  TIGR02528  5 liGsvgcGkttLtqaLk 21
               liG+ ++Gk tL ++++
  MMETSP1137-20121227|409_1 80 LIGHPNAGKSTLLRSVT 96
               89**********98875 PP

  == domain 2    score: 12.1 bits;  conditional E-value: 0.00013
  TIGR02528  86 ifak.eviglvtkidlaeadkeierakelLeeag.aekiFeissvdekgleelvdy 139
                ++a+ +++ ++tk+dl+   +++ +  e L++a   +++  iss+ ++ l el+++
  MMETSP1137-20121227|409_1 188 LLARkPQVVVLTKVDLPSVAHKAPQLLESLRKAArHKRVICISSHSKVNLMELQQR 243
                455559***********9888888777777766516889********999999875 PP

>> TIGR00450  mnmE_trmE_thdF: tRNA modification GTPase TrmE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.6   0.0   4.1e-05     0.011     211     300 ..      77     168 ..      63     254 .. 0.62

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 4.1e-05
  TIGR00450 211 klaivGktNvGKSSLlNallkkdraiVsdikGttR....DvvEedleleGilvkllDtAGiReaadkvEklGiekslkaikeadlvlyvlDask 300
                 + ++G++N+GKS Ll  + + d   V+d++ tt      v   + +  G ++  lD  G+ + a     lG+   l+  +++ l+l ++D ++
  MMETSP1137-20121227|409_1  77 DVGLIGHPNAGKSTLLRSVTRADPK-VADYPFTTLvpnlGVCAPSAVRPGRQMVWLDIPGLIDGAHSGRGLGLAF-LRHTERCRLLLHLVDGES 168
                5789***************999965.7899988842222344445555566666666666666666666666653.444566666666666554 PP

>> TIGR02315  ABC_phnC: phosphonate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.7   0.0   9.7e-05     0.027      31      50 ..      78      97 ..      57     105 .. 0.87
   2 ?   -0.6   0.0      0.56   1.5e+02      96     137 ..     197     239 ..     174     249 .. 0.50

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 9.7e-05
  TIGR02315 31 vaviGlsGaGkstllrsinr 50
               v++iG+  aGkstllrs+ r
  MMETSP1137-20121227|409_1 78 VGLIGHPNAGKSTLLRSVTR 97
               789**************988 PP

  == domain 2    score: -0.6 bits;  conditional E-value: 0.56
  TIGR02315  96 vlenvLsgrlgak.stlksllglfseedkekAlelLervglae 137
                vl+ v  + ++ k ++l + l+   ++++ + +++ ++v+l e
  MMETSP1137-20121227|409_1 197 VLTKVDLPSVAHKaPQLLESLRKAARHKRVICISSHSKVNLME 239
                4444444444333133444444444444445555555555544 PP

>> TIGR03719  ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   0.00015      0.04      12      53 ..      56      97 ..      50     107 .. 0.76

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 0.00015
  TIGR03719 12 kvvppkkeilkdislsffpgakiGvlGlnGaGkstllkimaG 53
               kvvpp  +  + ++ls+   a +G++G   aGkstll+ ++ 
  MMETSP1137-20121227|409_1 56 KVVPPGGTERRRLELSMTLVADVGLIGHPNAGKSTLLRSVTR 97
               666666666677788888889999999999999999987655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (255 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       236  (0.0575329); expected 82.0 (0.02)
Passed bias filter:                      222  (0.0541199); expected 82.0 (0.02)
Passed Vit filter:                        59  (0.0143832); expected 4.1 (0.001)
Passed Fwd filter:                        15  (0.00365675); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.39u 0.19s 00:00:00.58 Elapsed: 00:00:00.41
# Mc/sec: 820.91
//
Query:       MMETSP1137-20121227|411_1  [L=161]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (161 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        55  (0.0134081); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.13s 00:00:00.30 Elapsed: 00:00:00.30
# Mc/sec: 708.34
//
Query:       MMETSP1137-20121227|413_1  [L=279]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (279 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        49  (0.0119454); expected 82.0 (0.02)
Passed bias filter:                       42  (0.0102389); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.15s 00:00:00.38 Elapsed: 00:00:00.28
# Mc/sec: 1269.83
//
Query:       MMETSP1137-20121227|414_1  [L=529]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (529 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       105  (0.0255973); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.15s 00:00:00.50 Elapsed: 00:00:00.38
# Mc/sec: 1837.43
//
Query:       MMETSP1137-20121227|416_1  [L=325]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (325 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       141  (0.0343735); expected 82.0 (0.02)
Passed bias filter:                      110  (0.0268162); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.14s 00:00:00.42 Elapsed: 00:00:00.39
# Mc/sec: 1099.91
//
Query:       MMETSP1137-20121227|417_1  [L=1129]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1129 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       110  (0.0268162); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.64u 0.17s 00:00:00.81 Elapsed: 00:00:00.69
# Mc/sec: 2159.65
//
Query:       MMETSP1137-20121227|419_1  [L=228]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (228 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        78  (0.0190151); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.15s 00:00:00.35 Elapsed: 00:00:00.42
# Mc/sec: 716.51
//
Query:       MMETSP1137-20121227|421_1  [L=132]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.3e-15   54.2   0.0    3.9e-15   54.0   0.0    1.1  1  TIGR01289 LPOR: light-dependent protochlorophyllide reductase


Domain annotation for each model (and alignments):
>> TIGR01289  LPOR: light-dependent protochlorophyllide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.0   0.0   9.5e-19   3.9e-15     187     315 .]       2     132 .]       1     132 [] 0.76

  Alignments for each domain:
  == domain 1    score: 54.0 bits;  conditional E-value: 9.5e-19
  TIGR01289 187 akaykdsklcnmltvrelhrryhdetgivfaslypgcvad.tglfrehlplfrtlfppfqkyitkgyvseeeagkrlaqv.va..dpklkksgvywsw...gkrqesfeqelseevsddekakklwelseklvgla 315
                 kaykdsklcnm+ + e  rr+  ++g    sl pg +a+  g+fr +  lf + f ++ + +     + e  g  +a + va  d++l   g+++     gk+ +  ++  s e+ d++k +klw+ls kl gla
  MMETSP1137-20121227|421_1   2 DKAYKDSKLCNMMFTAEAARRFG-TSGFSVVSLSPGLIANpDGFFRYQNKLFARAFDFISRTLGVAE-TVEFGGSGVAYLaVAplDDRL--NGAFFDNfppGKH-QLAVHAPSAEARDEAKQRKLWDLSCKLTGLA 132
                59*******************97.57999**********84589*************9999775443.335566666654133124455..5666543121444.4556778999*******************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (132 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        69  (0.0168211); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.15u 0.18s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 600.78
//
Query:       MMETSP1137-20121227|423_1  [L=233]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (233 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        34  (0.00828864); expected 82.0 (0.02)
Passed bias filter:                       30  (0.00731351); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.17s 00:00:00.36 Elapsed: 00:00:00.38
# Mc/sec: 809.30
//
Query:       MMETSP1137-20121227|425_1  [L=443]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (443 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        51  (0.012433); expected 82.0 (0.02)
Passed bias filter:                       38  (0.00926377); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.15s 00:00:00.42 Elapsed: 00:00:00.43
# Mc/sec: 1359.79
//
Query:       MMETSP1137-20121227|428_1  [L=434]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (434 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        52  (0.0126767); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.16s 00:00:00.46 Elapsed: 00:00:00.40
# Mc/sec: 1432.08
//
Query:       MMETSP1137-20121227|429_1  [L=256]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (256 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       102  (0.0248659); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.16s 00:00:00.39 Elapsed: 00:00:00.68
# Mc/sec: 496.90
//
Query:       MMETSP1137-20121227|430_1  [L=272]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (272 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        73  (0.0177962); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.14s 00:00:00.39 Elapsed: 00:00:00.30
# Mc/sec: 1196.70
//
Query:       MMETSP1137-20121227|431_1  [L=324]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (324 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       139  (0.0338859); expected 82.0 (0.02)
Passed bias filter:                      114  (0.0277913); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.14s 00:00:00.41 Elapsed: 00:00:00.57
# Mc/sec: 737.32
//
Query:       MMETSP1137-20121227|432_1  [L=327]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (327 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       132  (0.0321794); expected 82.0 (0.02)
Passed bias filter:                      111  (0.02706); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.16s 00:00:00.43 Elapsed: 00:00:00.47
# Mc/sec: 918.31
//
Query:       MMETSP1137-20121227|433_1  [L=255]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (255 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        97  (0.023647); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.13s 00:00:00.36 Elapsed: 00:00:00.46
# Mc/sec: 731.68
//
Query:       MMETSP1137-20121227|434_1  [L=498]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (498 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        68  (0.0165773); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.15s 00:00:00.47 Elapsed: 00:00:00.48
# Mc/sec: 1369.39
//
Query:       MMETSP1137-20121227|435_1  [L=115]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (115 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       191  (0.0465627); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.13s 00:00:00.29 Elapsed: 00:00:00.28
# Mc/sec: 542.10
//
Query:       MMETSP1137-20121227|436_1  [L=88]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (88 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       209  (0.0509508); expected 82.0 (0.02)
Passed bias filter:                      136  (0.0331546); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.19s 00:00:00.35 Elapsed: 00:00:00.33
# Mc/sec: 351.97
//
Query:       MMETSP1137-20121227|437_1  [L=464]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (464 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        72  (0.0175524); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.14s 00:00:00.46 Elapsed: 00:00:00.50
# Mc/sec: 1224.86
//
Query:       MMETSP1137-20121227|438_1  [L=422]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (422 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        73  (0.0177962); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.18s 00:00:00.48 Elapsed: 00:00:00.44
# Mc/sec: 1265.90
//
Query:       MMETSP1137-20121227|439_1  [L=154]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (154 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       110  (0.0268162); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.17s 00:00:00.35 Elapsed: 00:00:00.28
# Mc/sec: 725.94
//
Query:       MMETSP1137-20121227|440_1  [L=316]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (316 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        86  (0.0209654); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.15s 00:00:00.40 Elapsed: 00:00:00.40
# Mc/sec: 1042.71
//
Query:       MMETSP1137-20121227|441_1  [L=452]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (452 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        79  (0.0192589); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.15s 00:00:00.44 Elapsed: 00:00:00.49
# Mc/sec: 1217.53
//
Query:       MMETSP1137-20121227|442_1  [L=416]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.9e-62  208.9   0.9    2.3e-62  208.7   0.6    1.0  1  TIGR03207 cyc_hxne_CoA_dh: cyclohexanecarboxyl-CoA dehydrogenase
    4.5e-32  109.2   0.1    1.4e-30  104.3   0.0    2.0  1  TIGR03204 pimC_large: pimeloyl-CoA dehydrogenase, large subunit
    3.5e-31  106.3   0.2    4.8e-31  105.8   0.1    1.1  1  TIGR04022 sulfur_SfnB: sulfur acquisition oxidoreductase, SfnB family
    7.1e-27   92.3   2.4    9.8e-27   91.8   1.7    1.1  1  TIGR03203 pimD_small: pimeloyl-CoA dehydrogenase, small subunit


Domain annotation for each model (and alignments):
>> TIGR03207  cyc_hxne_CoA_dh: cyclohexanecarboxyl-CoA dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  208.7   0.6   2.2e-65   2.3e-62      10     369 ..      47     408 ..      38     411 .. 0.95

  Alignments for each domain:
  == domain 1    score: 208.7 bits;  conditional E-value: 2.2e-65
  TIGR03207  10 ekarrfaaerlapgfkerdktrvldrellrdmgelgflgpelseeygglgvgclaagvlleeiaradlsvsyv.nllaslngqilaqharpeiakewlakliageallaialteprggsdaarlrlrierdgddyvlngektsisaadqadaavvfartgsveegargisallvpmdlpgitr.nrfdcigqraigrgsiffedvrvsadhllgdegkgfvqvmqgfdfsraliglqvlavaraaldetweyvaereafgkklsafqgvsfpladletqveaarllclrtlwlkdhglphtseaamckwwapklaydvihqcllshghggydrg.dleqrlrdvlglqigdgtaqimktiiar 369
                  +  f+++ l p   e d+ ++   e + +mgelg++g  ++eeygg+g+++la  + +eei+ +  s   +  +  sl  + + +++  e  ++wl    +ge+l +  l+ep  gsdaa     ++  gd+yvlng k+ i+ a++a aa+v+a t   + + +g+sa+lv    pg +  ++ d  g ra   g ++fed rv+ + llg  g+gf   m  +d  r  i  q l++a+a+l+ + +y + r++f  ++++ q + f lad+  ++e+arll  r+  lk    p+t eaam k  a   a    h  + + g  gy ++ + e+ +rd    +i +gt++i +++ia 
  MMETSP1137-20121227|442_1  47 TMCVEFSQNVLKPIAGELDREHRYPAEQIAQMGELGLMGVMVPEEYGGVGMDTLAYAIAMEEISAGCASTGVImSVNNSLYCDPVLRYGTEEQKQKWLVPYASGEKLGCFGLSEPGNGSDAAAAATTAVESGDEYVLNGTKAWITNAHDAHAAIVIATTD-KSLKHKGLSAFLVEKGTPGFSVgKKEDKLGIRASSTGNLIFEDCRVPKANLLGRLGDGFKLAMSTLDGGRIGIAGQALGIAKASLECAAHYAQTRKTFDAPIAKHQAIQFLLADMAVRLESARLLTHRAANLKSAKRPYTKEAAMAKLAASEAATANAHAAIQVLGGMGYVTEmPAERYYRDARITEIYEGTSEIQRLVIAG 408
                556789999999*999*************************************************99998765256789*9999************************************************************************9886.456789*************9862567899*********************************************************************************************************************************************9997889999*******************985 PP

>> TIGR03204  pimC_large: pimeloyl-CoA dehydrogenase, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  104.3   0.0   1.4e-33   1.4e-30      59     392 ..      88     410 ..      77     413 .. 0.84

  Alignments for each domain:
  == domain 1    score: 104.3 bits;  conditional E-value: 1.4e-33
  TIGR03204  59 wpkqyggtgwtsvqdyifneelqaapapqplafgv..smvgpviytfgneeqkkrflprianvddwwcqgfsepgsgsdlaslktkaekkgdkyiingqktwttlaqhadlifclcrtdatakkqegisfilvdmkskgitvrpiqtidg..gsevnevffddvevplenlvgeenkgwdyakfllgnertgia..rvgvskerirrikelaakvesggkpviedakfreklaaveielkaleltqlrvvadegkhgkgkpnpassvlkikgseiqqattellmevigpfaapydvhgddgsneamdwtaqiapsyf.nnrkvsiyggsneiqrniiakav 392
                 p +ygg g  ++   i  ee+ a  a + + + v  s+    +  +g+eeqk+++l   a  +   c g+sepg gsd a+  t a + gd+y++ng k+w t a+ a   ++++ td +  k++g+s  lv+  + g +v   +   g  +s   +++f+d  vp  nl+g+   g+  a   l   r gia   +g++k  ++   + a   ++   p+ + ++++  la + + l +  l   r  a + k  k      +++ k+  se   a +   ++v+g +    ++                a  y+ + r   iy g+ eiqr +ia  v
  MMETSP1137-20121227|442_1  88 VPEEYGGVGMDTLAYAIAMEEISAGCASTGVIMSVnnSLYCDPVLRYGTEEQKQKWLVPYASGEKLGCFGLSEPGNGSDAAAAATTAVESGDEYVLNGTKAWITNAHDAHAAIVIATTDKSL-KHKGLSAFLVEKGTPGFSVGKKEDKLGirASSTGNLIFEDCRVPKANLLGRLGDGFKLAMSTLDGGRIGIAgqALGIAKASLECAAHYAQTRKTFDAPIAKHQAIQFLLADMAVRLESARLLTHR--AANLKSAKRPYTKEAAMAKLAASEAATANAHAAIQVLGGMGYVTEM---------------PAERYYrDARITEIYEGTSEIQRLVIAGQV 410
                699*********************9999998877744677777789*********************************************************************9999876.578***************98776544422455677899********************************944589****************************************999987777..55677777777778889999****9999999999999876432222...............122333144555566666666666666655 PP

>> TIGR04022  sulfur_SfnB: sulfur acquisition oxidoreductase, SfnB family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  105.8   0.1   4.6e-34   4.8e-31      22     362 ..      58     392 ..      37     398 .. 0.82

  Alignments for each domain:
  == domain 1    score: 105.8 bits;  conditional E-value: 4.6e-34
  TIGR04022  22 aeeaaeRDrerrlPveeldafsqsGLwgitvPrayGGaevsaatlaeviaiisaaDpslgqipq.nhfallevlrlegseeqkrfffeevlaGeRfgn.alseagtk.nvkelktrlerdgdglrldGrkfystGalfahwipvlaldeegrev....lafvprdapGltviddWsgfGqrttasGtvlldevrveaeevvp.vqkafdrptlagpvaqliqaaidvGiaraaledtlafvrekarpwidsgvekasdDpltiaevgelairleaaeallerageavdaaaaepteesvaaasiavaeakvltteialeaaskLfelaGtrstlaelnldRhWRnaRth 362
                ++ a e Dre+r P+e++ ++ + GL+g+ vP++yGG ++++ + a  ++ isa  +s g i   n+  + + +   g+eeqk+++     +Ge++g   lse g+  ++++++t+ +++gd+++l+G+k++ t a  ah   v+a+ ++  ++      +v++++pG++v    + +G r+ + G +++++ rv++++++  + + f+ +  +     +  a+  +Gia+a+le + ++ ++  r  +d+ ++k +   +    ++++a+rle a+ l +ra++   +a++ p ++++a a       k++++e+a   a+  +++ G  +  +e+  +R++R+aR+ 
  MMETSP1137-20121227|442_1  58 KPIAGELDREHRYPAEQIAQMGELGLMGVMVPEEYGGVGMDTLAYAIAMEEISAGCASTGVIMSvNNSLYCDPVLRYGTEEQKQKWLVPYASGEKLGCfGLSEPGNGsDAAAAATTAVESGDEYVLNGTKAWITNAHDAHAAIVIATTDKSLKHkglsAFLVEKGTPGFSVGKKEDKLGIRASSTGNLIFEDCRVPKANLLGrLGDGFKLAMSTLDGGRIGIAGQALGIAKASLECAAHYAQT--RKTFDAPIAKHQAIQF---LLADMAVRLESARLLTHRAANL-KSAKR-PYTKEAAMA-------KLAASEAATANAHAAIQVLGGMGYVTEMPAERYYRDARIT 392
                5567889**********************************99999999***********9864388888999999********************96378998765267778899999*********************9888887665544434434569*************************************996256788877666666788889999***********999876..8899999988765555...567899**********999986.44443.444444555.......5555555555555556667778888999999999999985 PP

>> TIGR03203  pimD_small: pimeloyl-CoA dehydrogenase, small subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.8   1.7   9.6e-30   9.8e-27      44     360 ..      76     394 ..      68     409 .. 0.88

  Alignments for each domain:
  == domain 1    score: 91.8 bits;  conditional E-value: 9.6e-30
  TIGR03203  44 gklaeqgllglpfseadggfgagavetmivmealgkalvlepylatv...vigggflrragsaaqkaaylpgiidgsktlafaqleknsrydlgdvsttakkkgdgwvidgekfvvlngeaadtlivtartkgarrdrtgigvflvpadakgvtkkgyptqdglhaa...ditltgvevgadaaigdpenaleliervvddarvalcaeavglmdeslkttveyiktrkqfgvaigsfqvlqhraadmfvaveqarsmalfatmaadfddake.ranaiaaakvqigkslkfvgqqsiqlhggigmtmeakighyfkrltmiek 360
                +++ e gl+g+   e+ gg g  ++   i me +         + +v   + +   lr  g+++qk  +l     g k  +f   e     d +  +tta  +gd +v++g k  + n   a++ iv a t  + + ++g+  flv  ++ g +      + g++a+   ++ +   +v     +g   ++++l    +d  r+ ++ +a+g+   sl+++ +y +trk f  +i   q++q   adm v  e ar +   +  aa+++ ak   ++  a ak+   ++     + +iq+ gg+g   e+    y++   + e 
  MMETSP1137-20121227|442_1  76 AQMGELGLMGVMVPEEYGGVGMDTLAYAIAMEEISAGCASTGVIMSVnnsLYCDPVLRY-GTEEQKQKWLVPYASGEKLGCFGLSEPGNGSDAAAAATTAVESGDEYVLNGTKAWITNAHDAHAAIVIATTDKSLK-HKGLSAFLVEKGTPGFSVGKKEDKLGIRASstgNLIFEDCRVPKANLLGRLGDGFKLAMSTLDGGRIGIAGQALGIAKASLECAAHYAQTRKTFDAPIAKHQAIQFLLADMAVRLESARLL---THRAANLKSAKRpYTKEAAMAKLAASEAATANAHAAIQVLGGMGYVTEMPAERYYRDARITEI 394
                578899**************************997766655554444221778888876.7899******99*********************************************************9877655.67***************999999999998733367899999999999*********************************************************************99955...56788888888624666778999999***************************9986554443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (416 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       146  (0.0355924); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.36u 0.14s 00:00:00.50 Elapsed: 00:00:00.50
# Mc/sec: 1098.15
//
Query:       MMETSP1137-20121227|443_1  [L=396]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (396 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       106  (0.0258411); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.18s 00:00:00.50 Elapsed: 00:00:00.46
# Mc/sec: 1136.25
//
Query:       MMETSP1137-20121227|444_1  [L=49]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (49 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       136  (0.0331546); expected 82.0 (0.02)
Passed bias filter:                      131  (0.0319356); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.18s 00:00:00.30 Elapsed: 00:00:00.39
# Mc/sec: 165.83
//
Query:       MMETSP1137-20121227|445_1  [L=296]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.6e-14   49.3   0.0    2.6e-12   44.6   0.0    2.5  1  TIGR01262 maiA: maleylacetoacetate isomerase
    0.00013   19.7   0.0        0.2    9.2   0.0    2.2  2  TIGR00862 O-ClC: intracellular chloride channel protein
     0.0024   16.1   0.0      0.004   15.4   0.0    1.4  1  TIGR02200 GlrX_actino: glutaredoxin-like protein
     0.0046   15.0   0.0     0.0077   14.3   0.0    1.4  1  TIGR02181 GRX_bact: glutaredoxin 3


Domain annotation for each model (and alignments):
>> TIGR01262  maiA: maleylacetoacetate isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.6   0.0   2.5e-15   2.6e-12       2     169 ..      53     226 ..      52     264 .. 0.76

  Alignments for each domain:
  == domain 1    score: 44.6 bits;  conditional E-value: 2.5e-15
  TIGR01262   2 lYsyfrSsasyRvRiaLaLkgidyesvpvnLlkd..G............eqkkeefkalNPqelvPtLkidegevltqSlAiieyLeetypepa..LlpkdpakrarvralalliacdihPlqNlrvlqlleeklgvdeeekkewlkhwiekGlaalEellkekagafcvGdevtladvcLvpq 169
                +Y+ +      Rv iaL+ kg+dye+v ++  ++  G            +++ +ef a  P +lvP+L+ + g+ + +S+ ++ey+ee+ ++    Llp  p++ra+ r   +     i P        +  + l + +++ ++ +++   +G++ + + ++ + g f++G++ +l+d+ L p 
  MMETSP1137-20121227|445_1  53 FYGSWFCPYVQRVWIALEEKGVDYEYVEIDPYRKaeGsatkialtleekQERYPEFVAASPRGLVPALVRG-GAAVADSMVMLEYVEEAWQTGGaeLLPFTPEERAHSRYWINFANERIIP--------YYYRMLMARDDKGRTDARQAALAGMEEFSAAMS-EDGPFFAGQSFSLVDIALFPW 226
                68888888999***************99875544233222222222111556689999*************.6***************98876556*************987765555555........555555445666666667777777777766665.58****************996 PP

>> TIGR00862  O-ClC: intracellular chloride channel protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.3   0.0   0.00037      0.38      19      48 ..      59      88 ..      55      97 .. 0.92
   2 !    9.2   0.0    0.0002       0.2     161     232 ..     209     282 ..     194     286 .. 0.87

  Alignments for each domain:
  == domain 1    score: 8.3 bits;  conditional E-value: 0.00037
  TIGR00862 19 cpfsqrlfmilwlkgvvfnvttvdlkrkpe 48
               cp+ qr+++ l  kgv ++   +d  rk+e
  MMETSP1137-20121227|445_1 59 CPYVQRVWIALEEKGVDYEYVEIDPYRKAE 88
               *************************99987 PP

  == domain 2    score: 9.2 bits;  conditional E-value: 0.0002
  TIGR00862 161 kfldgdeltladcnllpklhivkvvakkyrdfdipa..eltgvwrylknayareeftntcpedkeielayadva 232
                 f+ g+ ++l d +l+p  +    v   yr+f+ p+  +++ + ++     ar   ++t ++ k +   ya  a
  MMETSP1137-20121227|445_1 209 PFFAGQSFSLVDIALFPWYERFLTVGAAYRGFQTPKtpAFERLNKWHAAVRARPSVSRTLADPKRLIENYAGYA 282
                5999******************9************9446999999999999*******9999998877777655 PP

>> TIGR02200  GlrX_actino: glutaredoxin-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   3.9e-06     0.004       3      38 ..      52      87 ..      50     106 .. 0.85

  Alignments for each domain:
  == domain 1    score: 15.4 bits;  conditional E-value: 3.9e-06
  TIGR02200  3 tvYatswCgyCaslkrtLdkdgaeYevvdiekdeea 38
               t Y+   C+y +++   L+++g++Ye v+i+   +a
  MMETSP1137-20121227|445_1 52 TFYGSWFCPYVQRVWIALEEKGVDYEYVEIDPYRKA 87
               6799999***********************965544 PP

>> TIGR02181  GRX_bact: glutaredoxin 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.0   7.5e-06    0.0077       2      36 ..      52      86 ..      51     109 .. 0.88

  Alignments for each domain:
  == domain 1    score: 14.3 bits;  conditional E-value: 7.5e-06
  TIGR02181  2 viYtkksCpycsrAkalLeekgvefeeievdkdke 36
               + Y + +Cpy +r    Leekgv++e +e+d  ++
  MMETSP1137-20121227|445_1 52 TFYGSWFCPYVQRVWIALEEKGVDYEYVEIDPYRK 86
               579999**********************9996654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (296 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        74  (0.01804); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.25u 0.16s 00:00:00.41 Elapsed: 00:00:00.35
# Mc/sec: 1116.25
//
Query:       MMETSP1137-20121227|446_1  [L=87]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (87 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        36  (0.00877621); expected 82.0 (0.02)
Passed bias filter:                       35  (0.00853242); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.12s 00:00:00.26 Elapsed: 00:00:00.25
# Mc/sec: 459.32
//
Query:       MMETSP1137-20121227|448_1  [L=461]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (461 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        91  (0.0221843); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.09s 00:00:00.43 Elapsed: 00:00:00.49
# Mc/sec: 1241.78
//
Query:       MMETSP1137-20121227|449_1  [L=270]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (270 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        66  (0.0160897); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.14s 00:00:00.35 Elapsed: 00:00:00.39
# Mc/sec: 913.77
//
Query:       MMETSP1137-20121227|450_1  [L=185]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (185 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        53  (0.0129205); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.14s 00:00:00.32 Elapsed: 00:00:00.41
# Mc/sec: 595.56
//
Query:       MMETSP1137-20121227|452_1  [L=573]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.2e-06   21.2   0.4    5.6e-06   20.8   0.3    1.0  1  TIGR00864 PCC: polycystin cation channel protein


Domain annotation for each model (and alignments):
>> TIGR00864  PCC: polycystin cation channel protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   0.3   1.4e-09   5.6e-06     311     450 ..     185     327 ..     177     351 .. 0.71

  Alignments for each domain:
  == domain 1    score: 20.8 bits;  conditional E-value: 1.4e-09
  TIGR00864 311 yrlvveklawldarkqcldraadlaivdsdalrrllvrkvtrslergvwlGlsdvnsveklhqveaseleegeeglagess....varaelcvr.ldqrsqtssdlcsar.rayvcelnpqvrvqdaevllvGlavfdlqgllqal 450
                 ++  e l+w +ar+ c +r++ la+++s+  + ll r +  s  r+ w+Gl+d +  ++  +  +       ++ +ge++       ae+c   ld r +   +  s + ++ +  l p +r   + ++   +a+  +   + a+
  MMETSP1137-20121227|452_1 185 LQIYHEALTWHEARDACEARGGTLAVINSPEQNDLL-REL--SEGRSTWIGLTDQEEEGRWIWNSTGAQPTFTDWRPGEPNndyySISAEHCAXvLDARQRLGLERLSLQhHTRLXVLIPFSRNATSVTIPASVASAASAAAVAAV 327
                5788999**********************9977666.555..55678*************999999999999*******9722224689999753777776665555543144555566666655555555555555555444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (573 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       118  (0.0287665); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.15s 00:00:00.60 Elapsed: 00:00:01.62
# Mc/sec: 466.85
//
Query:       MMETSP1137-20121227|453_1  [L=125]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (125 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        76  (0.0185275); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.14s 00:00:00.30 Elapsed: 00:00:00.45
# Mc/sec: 366.64
//
Query:       MMETSP1137-20121227|454_1  [L=427]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.2e-13   47.3   6.8    4.2e-07   27.2   0.1    2.1  2  TIGR00820 zip: ZIP zinc/iron transport family


Domain annotation for each model (and alignments):
>> TIGR00820  zip: ZIP zinc/iron transport family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.2   0.1     1e-10   4.2e-07      13      86 ..      39     109 ..      27     130 .. 0.81
   2 !   22.3   1.9   3.3e-09   1.4e-05     155     282 ..     276     393 ..     235     427 .] 0.81

  Alignments for each domain:
  == domain 1    score: 27.2 bits;  conditional E-value: 1e-10
  TIGR00820  13 ekalklkivaifvillasvigvllPLlskkvkalrletklflvvkaFaaGvilatgfvHvlpeafealsspcle 86 
                 + l++  +a+ vil+ s++g+++PL    ++    +++++ ++  F+ Gv l+ g++H+lp+a e+++   +e
  MMETSP1137-20121227|454_1  39 MEKLTFDAAALGVILIMSMLGISMPLY---LRGSFWNGQVIDAMGFFTGGVFLGAGMMHMLPDAVEMFEGLKVE 109
                455667778999*************96...556678999999************************99876665 PP

  == domain 2    score: 22.3 bits;  conditional E-value: 3.3e-09
  TIGR00820 155 evkeeeeeeqllrqrvvaqvLelGiivHsvviGlslGasqskdtikaLiaaLsFHqlFeGlglGgcisqaefkakkvvilavffavttPlgiaiGlavsssydeespkAliveGlLnalsaGiLiYma 282
                 vk+ ++ +    + v+ ++L l    Hs++ Gl+lG           + a+  H+l e ++l +   + +   k+++ + +++++ tP gi++G  +s+ ++   ++ ++ve  +++++aG  i++a
  MMETSP1137-20121227|454_1 276 GVKH-KHLTVAGTKSVLPLLLALLFSAHSLIAGLALGIKA-------KLVAILGHKLVEAVSLASSFVKEDVVVKTALPVLLVYTLMTPAGIVLGAFLSNIFTG--KHVILVESAVGGFAAGSFIFLA 393
                3333.2233344566778889999999**********755.......5566678***********************************************975..5789999999******999977 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (427 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       176  (0.0429059); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.32u 0.17s 00:00:00.49 Elapsed: 00:00:00.68
# Mc/sec: 828.81
//
Query:       MMETSP1137-20121227|455_1  [L=326]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (326 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        69  (0.0168211); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.14s 00:00:00.39 Elapsed: 00:00:00.45
# Mc/sec: 956.19
//
Query:       MMETSP1137-20121227|456_1  [L=338]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      0.007   13.8   0.0      0.013   12.9   0.0    1.4  1  TIGR02705 nudix_YtkD: nucleoside triphosphatase YtkD


Domain annotation for each model (and alignments):
>> TIGR02705  nudix_YtkD: nucleoside triphosphatase YtkD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.9   0.0   3.2e-06     0.013      47      75 ..     212     241 ..     188     247 .. 0.84

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 3.2e-06
  TIGR02705  47 lefPGGkveeget.skeaaiRevleetGai 75 
                l+f GGk+   e  +++ a+Re  eetG  
  MMETSP1137-20121227|456_1 212 LNFIGGKRXPDEHrAEDTAARECSEETGER 241
                89*******999726789**********75 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (338 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        81  (0.0197465); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.26u 0.16s 00:00:00.42 Elapsed: 00:00:00.49
# Mc/sec: 910.46
//
Query:       MMETSP1137-20121227|458_1  [L=93]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (93 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        22  (0.00536324); expected 82.0 (0.02)
Passed bias filter:                       19  (0.00463189); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.14s 00:00:00.27 Elapsed: 00:00:00.27
# Mc/sec: 454.63
//
Query:       MMETSP1137-20121227|459_1  [L=132]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.9e-08   30.3   7.7    8.7e-08   30.0   5.3    1.2  1  TIGR02338 gimC_beta: prefoldin, beta subunit
  ------ inclusion threshold ------
       0.26    9.2   6.6       0.15   10.0   0.7    2.1  2  TIGR00293 TIGR00293: prefoldin, alpha subunit
        0.5    8.3   8.6      0.092   10.7   2.3    2.0  2  TIGR02894 DNA_bind_RsfA: transcription factor, RsfA family


Domain annotation for each model (and alignments):
>> TIGR02338  gimC_beta: prefoldin, beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.0   5.3   6.3e-11   8.7e-08       9     108 ..      20     119 ..       7     121 .. 0.94

  Alignments for each domain:
  == domain 1    score: 30.0 bits;  conditional E-value: 6.3e-11
  TIGR02338   9 laqlqqlqqqlqavltqkqqveaelkevekaLeelekleddtkvYksvGnllvktdkeevleeLeekketlelrvktlekQeerlrekleelqekiqeal 108
                 + l q+qq+l  v+ +  + e e + +e +L el+ + d+t  Y++vG++ v+    +++++L+ k e      ++l   + ++++ +++l+e+ qe +
  MMETSP1137-20121227|459_1  20 QQSLGQAQQELAMVSGKLRTREXEGRLAELTLTELNGMGDETIAYQQVGKMFVQRPLSDLKQQLQTKAEACAKEREALAEKKTHVETAMQKLNEDFQEFI 119
                45678999***************************************************************************************99875 PP

>> TIGR00293  TIGR00293: prefoldin, alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.3     0.026        36      95     120 ..      13      38 ..       5      54 .. 0.60
   2 ?   10.0   0.7   0.00011      0.15       4      42 ..      76     114 ..      73     124 .. 0.87

  Alignments for each domain:
  == domain 1    score: 2.3 bits;  conditional E-value: 0.026
  TIGR00293  95 ieelekaieklqeelqelaseaqeie 120
                +e  ++ +++l ++ qela    +++
  MMETSP1137-20121227|459_1  13 KESFSEMQQSLGQAQQELAMVSGKLR 38 
                44444444444444444444444443 PP

  == domain 2    score: 10.0 bits;  conditional E-value: 0.00011
  TIGR00293   4 laaelqqlqeevealqaeiaalraliaeleeaietlesl 42 
                l+  +qqlq ++ea  +e +al + ++ +e+a + l++ 
  MMETSP1137-20121227|459_1  76 LSDLKQQLQTKAEACAKEREALAEKKTHVETAMQKLNED 114
                677899999999999999999999999999999999875 PP

>> TIGR02894  DNA_bind_RsfA: transcription factor, RsfA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.3     0.086   1.2e+02     103     133 ..      10      40 ..       2      48 .. 0.65
   2 ?   10.7   2.3   6.7e-05     0.092     100     146 ..      74     120 ..      35     128 .. 0.83

  Alignments for each domain:
  == domain 1    score: 0.6 bits;  conditional E-value: 0.086
  TIGR02894 103 rkekeklkeeleslqkrneeLekeleklkkk 133
                +k+ke + e ++sl + ++eL+    kl+++
  MMETSP1137-20121227|459_1  10 EKDKESFSEMQQSLGQAQQELAMVSGKLRTR 40 
                5666666666666666667776666666655 PP

  == domain 2    score: 10.7 bits;  conditional E-value: 6.7e-05
  TIGR02894 100 eklrkekeklkeeleslqkrneeLekeleklkkkksvieedyetlik 146
                + l   k++l+++ e+  k+ e L++++ ++++  + ++ed++ +i+
  MMETSP1137-20121227|459_1  74 RPLSDLKQQLQTKAEACAKEREALAEKKTHVETAMQKLNEDFQEFIR 120
                446667899999999***************************99986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (132 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       400  (0.0975134); expected 82.0 (0.02)
Passed bias filter:                      238  (0.0580205); expected 82.0 (0.02)
Passed Vit filter:                        30  (0.00731351); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.20u 0.19s 00:00:00.39 Elapsed: 00:00:00.35
# Mc/sec: 497.79
//
Query:       MMETSP1137-20121227|460_1  [L=420]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (420 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        50  (0.0121892); expected 82.0 (0.02)
Passed bias filter:                       41  (0.00999512); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.17s 00:00:00.44 Elapsed: 00:00:00.53
# Mc/sec: 1045.95
//
Query:       MMETSP1137-20121227|461_1  [L=238]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (238 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        46  (0.011214); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.15s 00:00:00.35 Elapsed: 00:00:00.27
# Mc/sec: 1163.46
//
Query:       MMETSP1137-20121227|462_1  [L=517]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.7e-29   99.5   0.0    3.1e-29   99.3   0.0    1.0  1  TIGR03903 TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
    9.5e-08   29.6   0.3    1.8e-07   28.6   0.2    1.4  1  TIGR03724 arch_bud32: Kae1-associated kinase Bud32


Domain annotation for each model (and alignments):
>> TIGR03903  TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.3   0.0   1.5e-32   3.1e-29       1     199 [.     107     297 ..     107     394 .. 0.83

  Alignments for each domain:
  == domain 1    score: 99.3 bits;  conditional E-value: 1.5e-32
  TIGR03903   1 etghkvaikllRedaaeeerlvaRFrReialCarLshPnivaLlDsGeaedgllFavFeyveGrtlrevLaadGaLpaaetgrLmlqvLDalaaahdaGvvhRDLkPqnimvsaadveshakvLDFGigaLlpgvedadeatltrttevlGsPaYaaPeqLRgepvtaksDlYaWGLivleCLtGkrvvqGasvaevly 199
                +tg+kvaik++ +       ++   + e+ +  +  hPn+v+L    ++++ +l+ v e+  G  l +++ a+G  + ++  +L + +L a+   hd G+ hRDLkP+ni++  + +e + k+ DFG++ + ++  + ++      +   G+P Y aPe L  e   ++ Dl++ G+iv   L G +   G+  ++++ 
  MMETSP1137-20121227|462_1 107 KTGQKVAIKIINKP---TGSKISMLKTEVDILTKADHPNVVKLYKVLDTPN-ILYLVMELLTGGELFDRIIAKGHYSENDARKLTVTMLKAVKYLHDLGIAHRDLKPENILLKDTSEEAEIKITDFGLSKIFSDDVAGEVVM----KTACGTPGYVAPEVLMHENYSSQVDLWSIGVIVYILLCGFPPFYGDNDNQMFR 297
                59*********988...566788899******************9999988.*******************************************************************************99865533333....3358*****************************99999988888877666654 PP

>> TIGR03724  arch_bud32: Kae1-associated kinase Bud32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.6   0.2     9e-11   1.8e-07      46     139 ..     130     234 ..     124     244 .. 0.74

  Alignments for each domain:
  == domain 1    score: 28.6 bits;  conditional E-value: 9e-11
  TIGR03724  46 kEarllseakkagvntPvvydvdpeekkivmeyiegkklkdlleekel.......ellkevGelvgklHkagivhgDlttsNiivk....ddklyliDfGLgkks 139
                +E+ +l +a +  v   + +  +p+   +vme + g +l d + +k +       +l+ ++ ++v  lH+ gi+h Dl ++Ni++k    + ++ + DfGL+k+ 
  MMETSP1137-20121227|462_1 130 TEVDILTKADHPNVVKLYKVLDTPNILYLVMELLTGGELFDRIIAKGHysendarKLTVTMLKAVKYLHDLGIAHRDLKPENILLKdtseEAEIKITDFGLSKIF 234
                66666666666644333333334566789999999888776655544448888889999999***********************7555577899*******974 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (517 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       123  (0.0299854); expected 82.0 (0.02)
Passed bias filter:                      103  (0.0251097); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.20s 00:00:00.60 Elapsed: 00:00:00.42
# Mc/sec: 1624.72
//
Query:       MMETSP1137-20121227|464_1  [L=115]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (115 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        53  (0.0129205); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.13s 00:00:00.28 Elapsed: 00:00:00.27
# Mc/sec: 562.18
//
Query:       MMETSP1137-20121227|465_1  [L=643]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   3.1e-134  446.7   0.0   4.4e-134  446.2   0.0    1.1  1  TIGR00955 3a01204: pigment precursor permease
    4.4e-95  317.3   0.6    4.1e-65  218.0   0.0    2.0  2  TIGR00956 3a01205: pleiotropic drug resistance family protein
    1.7e-30  104.1   0.0    2.7e-30  103.4   0.0    1.2  1  TIGR02982 heterocyst_DevA: ABC exporter ATP-binding subunit, DevA family
    1.3e-28   97.9   0.0    2.1e-28   97.2   0.0    1.2  1  TIGR03258 PhnT: 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT
    4.7e-27   92.9   0.0    6.6e-27   92.4   0.0    1.1  1  TIGR02857 CydD: thiol reductant ABC exporter, CydD subunit
    5.4e-27   92.6   0.0    8.1e-27   92.0   0.0    1.1  1  TIGR03864 PQQ_ABC_ATP: ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system
    9.6e-26   88.3   0.0    1.4e-25   87.7   0.0    1.2  1  TIGR02868 CydC: thiol reductant ABC exporter, CydC subunit
    1.2e-25   87.9   0.0      2e-25   87.2   0.0    1.2  1  TIGR01166 cbiO: cobalt ABC transporter, ATP-binding protein
    4.4e-25   86.5   0.0    6.5e-25   85.9   0.0    1.2  1  TIGR02673 FtsE: cell division ATP-binding protein FtsE
    4.7e-25   85.8   0.0    6.7e-25   85.3   0.0    1.1  1  TIGR03375 type_I_sec_LssB: type I secretion system ATPase
    9.1e-25   85.4   0.0    1.4e-24   84.7   0.0    1.2  1  TIGR00968 3a0106s01: sulfate ABC transporter, ATP-binding protein
    1.1e-24   85.1   0.0    1.7e-24   84.5   0.0    1.1  1  TIGR01188 drrA: daunorubicin resistance ABC transporter, ATP-binding protein
    8.2e-24   82.3   0.0    1.2e-23   81.8   0.0    1.1  1  TIGR03265 PhnT2: putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein
    1.6e-23   81.2   0.0    2.1e-23   80.7   0.0    1.1  1  TIGR01187 potA: polyamine ABC transporter, ATP-binding protein
    2.6e-23   80.4   0.0    4.1e-23   79.8   0.0    1.2  1  TIGR03608 L_ocin_972_ABC: putative bacteriocin export ABC transporter, lactococcin 972 group
    1.5e-22   78.1   0.1    2.3e-22   77.5   0.1    1.1  1  TIGR02142 modC_ABC: molybdate ABC transporter, ATP-binding protein
    1.7e-22   78.0   0.0    2.4e-22   77.5   0.0    1.2  1  TIGR01184 ntrCD: nitrate ABC transporter, ATP-binding proteins C and D
    6.7e-22   75.9   0.0    9.9e-22   75.4   0.0    1.2  1  TIGR02211 LolD_lipo_ex: lipoprotein releasing system, ATP-binding protein
    2.5e-21   74.1   0.0    3.9e-21   73.5   0.0    1.2  1  TIGR01189 ccmA: heme ABC exporter, ATP-binding protein CcmA
    2.7e-21   74.0   0.0    4.5e-21   73.3   0.0    1.2  1  TIGR01277 thiQ: thiamine ABC transporter, ATP-binding protein
    7.2e-21   72.8   0.0    1.1e-20   72.1   0.0    1.2  1  TIGR00960 3a0501s02: type II secretory pathway family protein
    1.3e-20   71.3   0.0    1.9e-20   70.7   0.0    1.2  1  TIGR01842 type_I_sec_PrtD: type I secretion system ATPase
    5.5e-20   69.5   0.0    1.1e-19   68.5   0.0    1.4  1  TIGR03873 F420-0_ABC_ATP: proposed F420-0 ABC transporter, ATP-binding protein
    7.7e-20   68.9   0.0    1.6e-19   67.8   0.0    1.4  1  TIGR02204 MsbA_rel: ABC transporter, permease/ATP-binding protein
    9.4e-20   68.9   0.0    1.6e-19   68.1   0.0    1.2  1  TIGR02315 ABC_phnC: phosphonate ABC transporter, ATP-binding protein
    5.2e-18   63.3   0.0    8.5e-18   62.6   0.0    1.2  1  TIGR02769 nickel_nikE: nickel import ATP-binding protein NikE
    5.3e-18   63.1   0.0    7.6e-18   62.6   0.0    1.1  1  TIGR01186 proV: glycine betaine/L-proline transport ATP binding subunit
    3.9e-17   59.6   0.1    9.7e-17   58.3   0.0    1.6  2  TIGR00958 3a01208: antigen peptide transporter 2
    4.4e-17   60.1   0.0    7.9e-17   59.3   0.0    1.3  1  TIGR03410 urea_trans_UrtE: urea ABC transporter, ATP-binding protein UrtE
    7.3e-17   59.6   0.0      1e-16   59.1   0.0    1.1  1  TIGR03522 GldA_ABC_ATP: gliding motility-associated ABC transporter ATP-binding subunit GldA
    1.7e-16   57.7   0.0    3.6e-16   56.6   0.0    1.5  1  TIGR03797 NHLM_micro_ABC2: NHLM bacteriocin system ABC transporter, ATP-binding protein
    2.6e-16   57.1   0.0    3.8e-16   56.5   0.0    1.2  1  TIGR02203 MsbA_lipidA: lipid A export permease/ATP-binding protein MsbA
    3.2e-16   56.6   0.0    4.8e-16   56.0   0.0    1.2  1  TIGR01846 type_I_sec_HlyB: type I secretion system ATPase
    3.8e-16   57.0   0.0    7.7e-16   56.0   0.0    1.4  1  TIGR00972 3a0107s01c2: phosphate ABC transporter, ATP-binding protein
    4.7e-16   56.8   0.0    9.1e-16   55.8   0.0    1.4  1  TIGR01978 sufC: FeS assembly ATPase SufC
    5.4e-16   56.8   0.0      9e-16   56.1   0.0    1.2  1  TIGR03411 urea_trans_UrtD: urea ABC transporter, ATP-binding protein UrtD
    4.4e-15   53.8   0.1    1.2e-14   52.4   0.1    1.7  1  TIGR03771 anch_rpt_ABC: anchored repeat-type ABC transporter, ATP-binding subunit
      1e-14   52.2   0.0    1.5e-14   51.6   0.0    1.1  1  TIGR02314 ABC_MetN: D-methionine ABC transporter, ATP-binding protein
    1.3e-14   52.2   0.0    2.1e-14   51.5   0.0    1.2  1  TIGR03740 galliderm_ABC: lantibiotic protection ABC transporter, ATP-binding subunit
    1.8e-14   51.6   0.0    3.2e-14   50.8   0.0    1.3  1  TIGR02324 CP_lyasePhnL: phosphonate C-P lyase system protein PhnL
    1.8e-14   51.4   0.1    7.6e-13   46.1   0.0    2.1  1  TIGR03005 ectoine_ehuA: ectoine/hydroxyectoine ABC transporter, ATP-binding protein EhuA
    1.5e-13   48.3   0.0      3e-13   47.3   0.0    1.3  1  TIGR03415 ABC_choXWV_ATP: choline ABC transporter, ATP-binding protein
      2e-13   47.5   0.0    5.1e-13   46.2   0.0    1.4  1  TIGR03269 met_CoM_red_A2: methyl coenzyme M reductase system, component A2
    4.9e-13   46.0   0.0      8e-13   45.3   0.0    1.2  1  TIGR03796 NHLM_micro_ABC1: NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein
    5.4e-13   46.7   0.0    8.4e-13   46.0   0.0    1.2  1  TIGR02770 nickel_nikD: nickel import ATP-binding protein NikD
    7.5e-13   44.1   0.0    1.1e-12   43.5   0.0    1.1  1  TIGR01257 rim_protein: rim ABC transporter
    1.1e-12   45.8   0.0    1.3e-11   42.3   0.0    2.1  1  TIGR02323 CP_lyasePhnK: phosphonate C-P lyase system protein PhnK
    1.3e-12   45.2   0.0      2e-12   44.6   0.0    1.2  1  TIGR01288 nodI: nodulation ABC transporter NodI
    1.9e-12   44.2   0.0      2e-06   24.4   0.0    2.1  2  TIGR02633 xylG: D-xylose ABC transporter, ATP-binding protein
    1.9e-12   44.3   0.0    3.6e-08   30.3   0.0    2.1  2  TIGR03719 ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family
    1.1e-11   41.9   0.0    1.8e-11   41.2   0.0    1.2  1  TIGR01192 chvA: glucan exporter ATP-binding protein
    1.2e-07   28.5   0.0      2e-07   27.8   0.0    1.2  1  TIGR01193 bacteriocin_ABC: ABC-type bacteriocin transporter
    4.1e-05   20.0   0.0    5.7e-05   19.5   0.0    1.1  1  TIGR00954 3a01203: peroxysomal long chain fatty acyl transporter
    0.00011   17.6   0.0    0.00035   15.9   0.0    1.7  1  TIGR01271 CFTR_protein: cystic fibrosis transmembrane conductor regulator (CFTR)
     0.0027   12.9   0.0     0.0045   12.2   0.0    1.2  1  TIGR00957 MRP_assoc_pro: multi drug resistance-associated protein (MRP)
  ------ inclusion threshold ------
      0.052    9.9   0.0      0.085    9.2   0.0    1.3  1  TIGR00368 TIGR00368: Mg chelatase-like protein


Domain annotation for each model (and alignments):
>> TIGR00955  3a01204: pigment precursor permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  446.2   0.0    6e-136  4.4e-134      24     615 ..      36     641 ..      18     642 .. 0.86

  Alignments for each domain:
  == domain 1    score: 446.2 bits;  conditional E-value: 6e-136
  TIGR00955  24 vkrleealarkk...pekellknvsGvaksGellAvlGsSGaGKtTLlnalafrse.kglkvsgd.vllnGekveakemraisayvqqddlfiptltvrehLmfsahlrlkrrltkkekrerveevleelgLrkcadtrigvpgrvkglSgGerkRlalaselltdPilLfcDEPTsGLDsfsaasvvkvLkklaqkgk.tviltiHQPsselfelfdkiillaeGrvvylGspeeavkffselg.lpcPenynpadFvlkvlavepgseeesretiekicdaeaksklsreveentnlasgke...............kklvkdseneekik............ykasfltqflvllkRsllsvlrdplllkvrllqvivvavligliylgqeltqkgvqningalFllltemtFqtvfavinvftaelpvflREtasglYrlsaYylaktlaelPlliilpllflsivYwmiglksgalkfltalllvvlvanvatsfglllscafestslalsvappvvipfllfgGfflnvdsvPvyfkwlsylSwfrYanEallinqwsdvkeie..lleantteecpssgeeiLeelsfeaadlaldllilvvlilvfrllaylalririrr 615
                +++l    ++kk   ++k +l++vsG++++Ge lA++G+SG+GKt Ll +la r + kg   +g+  +l G +++ k + +++++v qddl++  ltv+e++ f a+lrl+++l  +e+ +rve+ l++l+L++cadt ig++ + +g+SgGerkR a+++el++ P++Lf+DEPTsGLD++sa s+   L+k a+  + +v+ ++HQP s++f+lfd+++ll++G +vy Gs+  av++++e+  l+ P + npad++++++    ++     +  +   ++ ak++   +  + ++ ++g++               +                          ++s + qf+vll Rs  +++ d    k    q+++vav+ +l+++g +     + +++g+lF++  +  F+++  v+ +f+ e++++lRE + g Yr+  Y+lak+ ++   +++lp+++++i+Y ++gl+++a +f++ l+l + +  +++s+gl++s a+ +  la  +  ++v++++lfgGf++ v+++P ++ w++ylS++++++ +++in++ + +         +  e cp +g  + +++      + l++ +l+++ ++ r+l+y+alr++i++
  MMETSP1137-20121227|465_1  36 KSFLGLPSCNKKessKRKLVLNGVSGAIEPGETLALMGPSGSGKTSLLCVLAGRLPpKGRLEEGSlLTLGGVQLT-KPFYRRCGFVFQDDLLLAALTVKETIEFAAKLRLPQSLGDEERTRRVEQTLTQLQLNDCADTAIGSEKQ-RGVSGGERKRCAVGVELVSRPPILFLDEPTSGLDAASALSLALSLRKYAKDNEmIVLSSVHQPRSNIFSLFDRLLLLSKGSTVYYGSVAGAVPYIEEHAkLRLPPQTNPADWLIDLIDARSSELL---DAWRGFSEQSAKGSGIADGSAPFSGSHGSNgasehrvtkatgtrtA------------GagargpasantgPTTSSWFQFRVLLARSAKQQRGDV-YNKTNCFQILAVAVIAALLWSGDS----NISDRKGVLFFVNIQQAFNAQNTVLRLFPRERSLMLRERRCGSYRMLPYFLAKSASDSVSIFVLPVIYAIIIYFSVGLRREAGAFFVYLALSLSTVFAGQSIGLIISLAVPDFALANCISFVAVLLIMLFGGFYVGVERIPEWLAWFRYLSFVFWGYSGMIINEFGNNEIPCdqASPGEYGEACPIDGDLVVKSMGYGDLSVGLCVGMLLLISFSMRFLGYVALRFNINF 641
                4455555566666678999***********************************8625655666669999**999.788899***********************************************************7775.*************************************************9776155568************************************997549**************9976655443...3444444444444444444444443444332222222233334331............03333454544555678889*********99887776.778999**************9965....6999*****************************************************************************************************************************************************************987643224333455678***************9999***********************99985 PP

>> TIGR00956  3a01205: pleiotropic drug resistance family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  218.0   0.0   5.6e-67   4.1e-65     772    1025 ..      49     300 ..      40     340 .. 0.92
   2 !   95.7   1.6   4.6e-30   3.4e-28     397     624 ..     365     588 ..     333     599 .. 0.92

  Alignments for each domain:
  == domain 1    score: 218.0 bits;  conditional E-value: 5.6e-67
  TIGR00956  772 kkekrvlLdevdGwvkPGkltALmGasGAGkttLlnvLaeRv.ttGvitegdrlv.ngrkldssFqRsiGYvqqqDlHletstvreaLrfsAylRqpkevskkekneyveevikllelesyadAvvGvpGe.GLnveqRkrltigveLvAkPklllFlDePtsGLDsqtawsivkllrkladaGqa.ilCtiHqPsailleeFDrLLllqkGGktvYfGdlGensktlieYFekhGaekcpeeanPAewmLevigaaa 1025
                 +++++ +L+ v+G ++PG+  ALmG sG Gkt Ll vLa+R+   G ++eg  l  +g +l + F R+ G+v q+Dl l+  tv+e+++f+A lR p+++ ++e+++ ve+ +  l+l++ ad  +G   + G++   Rkr ++gveLv +P  +lFlDePtsGLD+ +a s+   lrk a+     +l  +HqP   ++  FDrLLll kG  tvY+G +       + Y e+h   ++p+++nPA+w+++ i a +
  MMETSP1137-20121227|465_1   49 SSKRKLVLNGVSGAIEPGETLALMGPSGSGKTSLLCVLAGRLpPKGRLEEGSLLTlGGVQLTKPFYRRCGFVFQDDLLLAALTVKETIEFAAKLRLPQSLGDEERTRRVEQTLTQLQLNDCADTAIGSEKQrGVSGGERKRCAVGVELVSRP-PILFLDEPTSGLDAASALSLALSLRKYAKDNEMiVLSSVHQPRSNIFSLFDRLLLLSKG-STVYYGSVA----GAVPYIEEHAKLRLPPQTNPADWLIDLIDARS 300 
                 4556778**********************************9458*******9964889********************************************************************98888********************.99*************************98776516789********************9.9*****875....5689***********************98754 PP

  == domain 2    score: 95.7 bits;  conditional E-value: 4.6e-30
  TIGR00956 397 tvsfsqqvkyilaRellrlkgdasvtlikvvgniimalilssvfynlekntsdfyvrggalffallfnafsslleiasly.earpivekhrkyalyhPsadalasilselPvkliesvvfniilyflvnlrreagrFffylLilflatlvmshlFrsigavtktlseAmtlaallllalslytgfviprkeilkWskWiayvnPlayafesllvnefharefecsqlvP 624
                t s + q++++laR+ ++ +gd ++  ++ +++++ a+i++ ++    + +s++  r g+lff  + +af++   ++ l+  +r+++ ++r+   y+     la   s+    ++  v++ ii+yf v+lrreag+Ff+yl ++++++++  ++  +i+ ++  ++ A+ ++ + +l+++l++gf +  ++i++W+ W +y++ + + +  +++nef ++e++c+q  P
  MMETSP1137-20121227|465_1 365 TTSSWFQFRVLLARSAKQQRGD-VYNKTNCFQILAVAVIAALLW----SGDSNISDRKGVLFFVNIQQAFNAQNTVLRLFpRERSLMLRERRCGSYRMLPYFLAKSASDSVSIFVLPVIYAIIIYFSVGLRREAGAFFVYLALSLSTVFAGQSIGLIISLAVPDFALANCISFVAVLLIMLFGGFYVGVERIPEWLAWFRYLSFVFWGYSGMIINEFGNNEIPCDQASP 588
                668889*********9998888.58899*********9998765....45677778***********************94579*************************9999****************************************************************************************************************9877 PP

>> TIGR02982  heterocyst_DevA: ABC exporter ATP-binding subunit, DevA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  103.4   0.0   3.7e-32   2.7e-30      14     218 ..      49     260 ..      45     262 .. 0.87

  Alignments for each domain:
  == domain 1    score: 103.4 bits;  conditional E-value: 3.7e-32
  TIGR02982  14 gelrkqvlfdinleiepgeiviltGpsGsGkttlltligglrsvqeGelkvlgkelkgasekel.vqvrrkiGyifqahnllesltaeqnvrmalelk..eklsakeakakaeelleavglee.....rldykpedlsgGqkqrvaiaralvarPklvladePtaaldkksgrevvellqklareqgttillvthdnr..ildvadrivkmedGk 218
                 ++rk vl+ ++  iepge + l GpsGsGkt ll +++g r   +G l+    +l  +   +l +   r+ G++fq   ll +lt+++ +++a++l+  ++l  +e++ ++e+ l+++ l++       + k + +sgG ++r a+   lv+rP +++ dePt+ ld+ s+ ++   l+k a+++ + +l   h +r  i+ + dr++ + +G+
  MMETSP1137-20121227|465_1  49 SSKRKLVLNGVSGAIEPGETLALMGPSGSGKTSLLCVLAG-RLPPKGRLEE--GSLLTLGGVQLtKPFYRRCGFVFQDDLLLAALTVKETIEFAAKLRlpQSLGDEERTRRVEQTLTQLQLNDcadtaIGSEKQRGVSGGERKRCAVGVELVSRPPILFLDEPTSGLDAASALSLALSLRKYAKDNEMIVLSSVHQPRsnIFSLFDRLLLLSKGS 260
                578999******************************9987.7888888874..344444444440458899**********************998763377999999***************6655333567889***********************************************************998779********999985 PP

>> TIGR03258  PhnT: 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.2   0.0   2.8e-30   2.1e-28      21     223 ..      53     266 ..      46     272 .. 0.85

  Alignments for each domain:
  == domain 1    score: 97.2 bits;  conditional E-value: 2.8e-30
  TIGR03258  21 rvvlddlsleieaGellallGksGsGkttllravaGfvkadG....Grll.vadrdlthlppykrnlallvqnyalfphlkveenvafGlra...rkqskaliaervadalklvqlsdaaar.....lpaqlsGGqqqrvalaralvvrpdvllldeplsaldaqlrasvveelkalhrelpeltvlyvthdrdealvladkillmkeGslialGe 223
                + vl+ +s  ie+Ge lal+G+sGsGkt+ll ++aG + ++G    G ll +++ +lt+  p+ r  ++++q+  l+  l+v+e + f  +    +   + + ++rv ++l  +ql+d a           +sGG ++r a+   lv rp +l+ldep s lda    s+   l++  ++   + +  v   r++ + l d++ll+ +Gs + +G 
  MMETSP1137-20121227|465_1  53 KLVLNGVSGAIEPGETLALMGPSGSGKTSLLCVLAGRLPPKGrleeGSLLtLGGVQLTK--PFYRRCGFVFQDDLLLAALTVKETIEFAAKLrlpQSLGDEERTRRVEQTLTQLQLNDCADTaigseKQRGVSGGERKRCAVGVELVSRPPILFLDEPTSGLDAASALSLALSLRKYAKDNEMIVLSSVHQPRSNIFSLFDRLLLLSKGSTVYYGS 266
                789*************************************9999987654278888875..888999*******************9986651124556677899***********9987541111145669******************************************9988776555555566679999**************999986 PP

>> TIGR02857  CydD: thiol reductant ABC exporter, CydD subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.4   0.0     9e-29   6.6e-27     333     514 ..      51     237 ..       3     255 .. 0.78

  Alignments for each domain:
  == domain 1    score: 92.4 bits;  conditional E-value: 9e-29
  TIGR02857 333 grkpalkevsltvepgelvalvGaSGaGKstllklllgfvepteGailvnga..elaeld.adswrkqiawvpQkPllfeg.tvaenirlarkdaseaevkealeragldelvk..alpqgleteiGe.rgagLSgGqrqRlaLArallrdapllllDEPtahLDaeteaevlealrelaegrtvllva 514
                 rk +l++vs ++epge++al+G+SG+GK++ll +l+g ++p +G+++ +g+  +l  ++ ++ +++++++v Q  ll+++ tv+e i++a k    + + +  +   +++ +   +l++  +t iG+ + +g+SgG+r+R a+   l++  p+l lDEPt+ LDa+++  +  +lr++a+ + +++ +
  MMETSP1137-20121227|465_1  51 KRKLVLNGVSGAIEPGETLALMGPSGSGKTSLLCVLAGRLPP-KGRLE-EGSllTLGGVQlTKPFYRRCGFVFQDDLLLAAlTVKETIEFAAKLRLPQSLGDEERTRRVEQTLTqlQLNDCADTAIGSeKQRGVSGGERKRCAVGVELVSRPPILFLDEPTSGLDAASALSLALSLRKYAKDNEMIVLS 237
                3447999*********************************65.56665.333123333331346899********9887655********99999888876555555554444411677899*****625789***********************************************666555543 PP

>> TIGR03864  PQQ_ABC_ATP: ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.0   0.0   1.1e-28   8.1e-27      14     217 ..      53     268 ..      45     279 .. 0.85

  Alignments for each domain:
  == domain 1    score: 92.0 bits;  conditional E-value: 1.1e-28
  TIGR03864  14 rralddvsltvakgefvaLLGpnGaGkstLfslltrLyeak....egei.kvaGldlrrapkealarlGvvfqqstlDldlsveqnlryhaaL...hGlsraeaeerieealarlglaerae.....ekvreLnGGhrrrveiarallhePklLLlDeatvGLDiesraalveevrelvreeglsvLWathl..vdeveaedrlvvlhkGkvlaqGaaa 217
                + +l++vs ++++ge  aL+Gp G+Gk+ L+ +l++ +  k    eg++ ++ G++l+   k   +r G vfq+  l   l+v++ +++ a+L   + l+ +e ++r+e++l++l+l++ a+     ek r ++GG+r+r  +   l+ +P +L lDe+t GLD++s  +l  ++r+ ++++++ vL + h    +  +  drl++l kG  +  G++a
  MMETSP1137-20121227|465_1  53 KLVLNGVSGAIEPGETLALMGPSGSGKTSLLCVLAGRLPPKgrleEGSLlTLGGVQLT---KPFYRRCGFVFQDDLLLAALTVKETIEFAAKLrlpQSLGDEERTRRVEQTLTQLQLNDCADtaigsEKQRGVSGGERKRCAVGVELVSRPPILFLDEPTSGLDAASALSLALSLRKYAKDNEMIVLSSVHQprSNIFSLFDRLLLLSKGSTVYYGSVA 268
                6789******************************987654444446665145555554...45789**************************95555899******************98872222256799***********************************************************8323456788*********999888765 PP

>> TIGR02868  CydC: thiol reductant ABC exporter, CydC subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.7   0.0   1.9e-27   1.4e-25     348     525 ..      52     235 ..      26     242 .. 0.82

  Alignments for each domain:
  == domain 1    score: 87.7 bits;  conditional E-value: 1.9e-27
  TIGR02868 348 ee.vlkgvsldlepGervavvGasGaGKstLlallaglldpl....kGe.vtldgvsvaslsesevrrvvsvlaqdaHlFdttvreNlrlarpdatdeellaaLervgLadwlra..LpdGldtklgeggar.lSGGerqRlalARaLladapvllLDEPtehLDaeteeelledLlaaeegrtvvl 525
                 + vl+gvs  +epGe +a++G+sG+GK+ Ll +lag l+p+    +G+ +tl gv++++      rr+  v+++d  l + tv+e + +a++    + l +  +  + ++ l +  L+d +dt +g++ +r +SGGer+R a+   L++  p+l LDEPt +LDa+ + +l   L++  +++ +++
  MMETSP1137-20121227|465_1  52 RKlVLNGVSGAIEPGETLALMGPSGSGKTSLLCVLAGRLPPKgrleEGSlLTLGGVQLTK---PFYRRCGFVFQDDLLLAALTVKETIEFAAKLRLPQSLGDEERTRRVEQTLTQlqLNDCADTAIGSEKQRgVSGGERKRCAVGVELVSRPPILFLDEPTSGLDAASALSLALSLRKYAKDNEMIV 235
                445*************************************96333356625677766655...5566777777777777788*************999999999999999999875579*******9766544****************************************99995444433322 PP

>> TIGR01166  cbiO: cobalt ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.2   0.0   2.8e-27     2e-25       6     184 ..      54     238 ..      50     241 .. 0.86

  Alignments for each domain:
  == domain 1    score: 87.2 bits;  conditional E-value: 2.8e-27
  TIGR01166   6 evlkglnlavergevlallGanGaGkstlllhlnGllrPksGkvlldGeeldysrkglle.lrkkvalvlqdpddqlfaa.dvdedvafgp.lnl..Glseaeverrvrealaavdisgleerpt.....hllsgGekkrvaiagavalrpdvllldePtagldpaGaeqlleilrklreeGktvvist 184
                 vl+g++ a+e ge+lal+G+ G+Gk+ ll  l+G l P +G++  +G+ l  +  +l++   ++ ++v+qd  d l+aa +v+e + f+  l l   l ++e +rrv++ l+++++++ ++ ++     + +sgGe+kr a+   ++ rp +l+ldePt+gld+a a  l+  lrk  ++ + +v+s+
  MMETSP1137-20121227|465_1  54 LVLNGVSGAIEPGETLALMGPSGSGKTSLLCVLAGRLPP-KGRL-EEGSLLTLGGVQLTKpFYRRCGFVFQD--DLLLAAlTVKETIEFAAkLRLpqSLGDEERTRRVEQTLTQLQLNDCADTAIgsekqRGVSGGERKRCAVGVELVSRPPILFLDEPTSGLDAASALSLALSLRKYAKDNEMIVLSS 238
                59***********************************77.5886.58999****99999846799******7..55555439*******852344226779999***************99876522222679**********************************************9999999986 PP

>> TIGR02673  FtsE: cell division ATP-binding protein FtsE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.9   0.0   8.9e-27   6.5e-25      15     196 ..      53     241 ..      45     260 .. 0.80

  Alignments for each domain:
  == domain 1    score: 85.9 bits;  conditional E-value: 8.9e-27
  TIGR02673  15 veaLkdvslkiekgeflfltGasGaGkttllklllgaekpsrGevevagedvarlrerelpl.lRrkigvvfqDfkllkdrtvlenvalalevr...gkkeeeiqkrveevlelvgledkakal.....peelsgGeqqRvaiaRaivnkPelllaDePtGnlDdelseri.ldllkelnkrGttvivathd 196
                  +L+ vs  ie+ge l l+G+sG+Gkt+ll +l g++ p +G+  ++  ++ +l + +l++ + r+ g vfqD  ll + tv e + +a ++r      +ee ++rve++l+++ l+d a++       + +sgGe++R a+   +v++P++l  DePt  lD++ + ++ l+l k ++++ + v+ + h+
  MMETSP1137-20121227|465_1  53 KLVLNGVSGAIEPGETLALMGPSGSGKTSLLCVLAGRLPP-KGR--LEEGSLLTLGGVQLTKpFYRRCGFVFQDDLLLAALTVKETIEFAAKLRlpqSLGDEERTRRVEQTLTQLQLNDCADTAigsekQRGVSGGERKRCAVGVELVSRPPILFLDEPTSGLDAASALSLaLSLRKYAKDNEMIVLSSVHQ 241
                568999**************************99998866.675..566677777777775448899*******************9888766511145578999**************99875222115669**********************************9998344545555566666666776 PP

>> TIGR03375  type_I_sec_LssB: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.3   0.0   9.1e-27   6.7e-25     478     684 ..      51     266 ..      21     274 .. 0.82

  Alignments for each domain:
  == domain 1    score: 85.3 bits;  conditional E-value: 9.1e-27
  TIGR03375 478 eekaaLknvslkikpGekvaiiGriGsGKstllklllglyept....eGsvl.ldgvdirqidpadlrrnigyvpqdvtLfyG.tlrdNialgapaaedeellraaelaGvtefvkk..hpkGldlqig.erGesLSgGQrqavalaRallkdppillLDEPtsalDnsseekllerLkelladkTlvlvt..H..rtslLelvdriivldkGrivadGp 684
                ++k +L+ vs  i+pGe +a++G  GsGK++ll +l+g + p+    eGs+l l gv+++   +    r+ g+v qd  L+++ t+++ i+++a+    ++l    ++  v++ + +    +  d+ ig e+ +++SgG r+  a+   l++ ppil+LDEPts lD++s  +l  +L+++++d+ +++ +  H  r+++ +l dr+++l+kG  v  G+
  MMETSP1137-20121227|465_1  51 KRKLVLNGVSGAIEPGETLALMGPSGSGKTSLLCVLAGRLPPKgrleEGSLLtLGGVQLT---KP-FYRRCGFVFQDDLLLAAlTVKETIEFAAKLRLPQSLGDEERTRRVEQTLTQlqLNDCADTAIGsEKQRGVSGGERKRCAVGVELVSRPPILFLDEPTSGLDAASALSLALSLRKYAKDNEMIVLSsvHqpRSNIFSLFDRLLLLSKGSTVYYGS 266
                567799********************************9988433337876426666554...33.4566899999999988769*********9888888877777777776655411567899999748899*************************************************9888886534655789***************999986 PP

>> TIGR00968  3a0106s01: sulfate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.7   0.0   1.9e-26   1.4e-24      13     214 ..      53     266 ..      44     272 .. 0.81

  Alignments for each domain:
  == domain 1    score: 84.7 bits;  conditional E-value: 1.9e-26
  TIGR00968  13 fqalddvdlevktGslvallGpsGsGkstllrviaGlekp....dsGri.lleGrdvtrvkvrdreiGfvfqhyalfkhltvrdniafGleir...kkdkakikakveellelvqleklgdr.....ypsqlsGGqrqrvalaralavepqvllldepfgaldakvrkelrawlrklhdevkvttvfvthd.qeealevadrivvlekGkieqvgs 214
                  +l+ v+  ++ G+  al+GpsGsGk++ll v+aG   p    ++G + +l G  v  +k   r+ Gfvfq+  l+  ltv++ i f  ++r       ++  ++ve+ l  +ql++ +d          +sGG+r+r a+   l   p +l+ldep + lda     l   lrk  ++ ++  +   h+ +++   + dr+ +l+kG     gs
  MMETSP1137-20121227|465_1  53 KLVLNGVSGAIEPGETLALMGPSGSGKTSLLCVLAGRLPPkgrlEEGSLlTLGG--VQLTKPFYRRCGFVFQDDLLLAALTVKETIEFAAKLRlpqSLGDEERTRRVEQTLTQLQLNDCADTaigseKQRGVSGGERKRCAVGVELVSRPPILFLDEPTSGLDAASALSLALSLRKYAKDNEMIVLSSVHQpRSNIFSLFDRLLLLSKGSTVYYGS 266
                568999999***************************654311114555413444..4455677899**************************94433345677889**********9877652111145669********************************************998887777666665278899***********98776665 PP

>> TIGR01188  drrA: daunorubicin resistance ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.5   0.0   2.3e-26   1.7e-24       9     209 ..      56     268 ..      51     281 .. 0.85

  Alignments for each domain:
  == domain 1    score: 84.5 bits;  conditional E-value: 2.3e-26
  TIGR01188   9 vdgvnlkveegevfglLGPnGAGKtttikmLttllkPds..GtarvaGyDvvrepdevRrsigvvpqkasvdedLtarenlellgel...yglpkkeaeeraeellelvelkeaadkkv.....ktysgGmrrrlelaasliaqPevlfLDEPtiGLDprtrraiwdlieelkkegvtilltthy..leeadkladrvaiidkGkiiaedtpe 209
                ++gv+  +e ge ++l+GP G GKt ++ +L++ l+P++   ++ +     v+  +   r+ g v+q+  +  +Lt +e +e+ ++l   + l  +e+ +r+e+ l +++l + ad  +     +  sgG r+r  +++ l+++P +lfLDEPt+GLD+ ++ ++   +++  k++  i+l++ +    ++ +l dr+ +++kG  +  +++ 
  MMETSP1137-20121227|465_1  56 LNGVSGAIEPGETLALMGPSGSGKTSLLCVLAGRLPPKGrlEEGSLLTLGGVQLTKPFYRRCGFVFQDDLLLAALTVKETIEFAAKLrlpQSLGDEERTRRVEQTLTQLQLNDCADTAIgsekqRGVSGGERKRCAVGVELVSRPPILFLDEPTSGLDAASALSLALSLRKYAKDNEMIVLSSVHqpRSNIFSLFDRLLLLSKGSTVYYGSVA 268
                6789999******************************753323445555557777778999*************************9555688999999***************9987722222579********************************************999977777776440145667899*********999998876 PP

>> TIGR03265  PhnT2: putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.8   0.0   1.6e-25   1.2e-23      16     217 ..      52     265 ..      36     269 .. 0.82

  Alignments for each domain:
  == domain 1    score: 81.8 bits;  conditional E-value: 1.6e-25
  TIGR03265  16 aftalkdislsvkkgelvclLGPsGCGkttLLriiaGL....ekqdaGaillggrditrlppqkrdyGivfqsYaLfPnltvaeniayGLk...nkklkreevaerveelLelvglsgseekyPg...q..lsGGqqqrvaLaralalsPglLLLDePlsaLDakvrekLreelkklqrklgvttimvthd.qeealslaDrivvmnkgkieqvg 217
                +  +l+ +s +++ ge ++l+GPsG Gkt+LL ++aG      + ++G++l+ g  +  + p  r  G+vfq   L   ltv+e i++  k    + l+ ee+++rve+ L  ++l++ ++   g   q  +sGG ++r a++  l+ +P +L+LDeP s LDa    +L   l+k  +  ++  +   h+ + + +sl Dr+  + kg+   +g
  MMETSP1137-20121227|465_1  52 RKLVLNGVSGAIEPGETLALMGPSGSGKTSLLCVLAGRlppkGRLEEGSLLTLGG-VQLTKPFYRRCGFVFQDDLLLAALTVKETIEFAAKlrlPQSLGDEERTRRVEQTLTQLQLNDCADTAIGsekQrgVSGGERKRCAVGVELVSRPPILFLDEPTSGLDAASALSLALSLRKYAKDNEMIVLSSVHQpRSNIFSLFDRLLLLSKGSTVYYG 265
                4567999******************************523324567787765543.4455688999**********************9772234678899***********99999987654331222449**********************************************9999999988887356788999999999999877666 PP

>> TIGR01187  potA: polyamine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.7   0.0   2.9e-25   2.1e-23       1     180 [.      71     262 ..      71     269 .. 0.85

  Alignments for each domain:
  == domain 1    score: 80.7 bits;  conditional E-value: 2.9e-25
  TIGR01187   1 lLGpsGsGkttlLrllaGl....eeldsGkil.ldgedvtevpaekrsvnvvfqsyaLfPhmtveenvafgLkm...rkvpkaeikervkeaLelvqleefak.....rkpsqlsGGqrqrvalaravvkkPkiLLlDeplsaLDkkLrdqmqlelkalqeklGitvvlvthD.qeealtmsdriavlrkGkia 180
                l+GpsGsGkt lL +laG      +l++G++l l+g+++t   +  r  + vfq+  L   +tv+e + f+ k+   + ++ +e++ rv++ L+  ql++ a+      k   +sGG r+r a+   +v +P iL+lDep s LD      + l l++  +   + v+   h  +++ +++ dr+ +l+kG  +
  MMETSP1137-20121227|465_1  71 LMGPSGSGKTSLLCVLAGRlppkGRLEEGSLLtLGGVQLT--KPFYRRCGFVFQDDLLLAALTVKETIEFAAKLrlpQSLGDEERTRRVEQTLTQLQLNDCADtaigsEKQRGVSGGERKRCAVGVELVSRPPILFLDEPTSGLDAASALSLALSLRKYAKDNEMIVLSSVHQpRSNIFSLFDRLLLLSKGSTV 262
                79****************6233357889997537777766..588899**********************988733457899****************998762222157788************************************************99999999888724567799*********9876 PP

>> TIGR03608  L_ocin_972_ABC: putative bacteriocin export ABC transporter, lactococcin 972 group
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.8   0.0   5.5e-25   4.1e-23       7     191 ..      49     238 ..      44     255 .. 0.84

  Alignments for each domain:
  == domain 1    score: 79.8 bits;  conditional E-value: 5.5e-25
  TIGR03608   7 kfkdkeilkklslkiekGelvaivGesGsGKstlLnilgllekkdsgkvilegkekaklkskkaskllreklgylFqnfaLlenetveenlelalkl...kkkskkekekkkkevlekvglekklkkkiye.....lsgGekqRvalarillkeselilADEPtgsLDkknreevlellkelkeegktiiivt 191
                + k k +l+ +s  ie Ge++a++G sGsGK+ lL +l+    ++ g+  le+ +  +l   + +k +  + g++Fq+  Ll   tv+e +e a kl   + +  +e++++++++l +++l+ + ++ i +     +sgGe++R a+   l+  +++++ DEPt+ LD+ +   +   l++ ++++++i++  
  MMETSP1137-20121227|465_1  49 SSKRKLVLNGVSGAIEPGETLALMGPSGSGKTSLLCVLAGRLPPK-GR--LEEGSLLTLGGVQLTKPFYRRCGFVFQDDLLLAALTVKETIEFAAKLrlpQSLGDEERTRRVEQTLTQLQLNDCADTAIGSekqrgVSGGERKRCAVGVELVSRPPILFLDEPTSGLDAASALSLALSLRKYAKDNEMIVLSS 238
                567789********************************9765544.55..566666889999998888889*********************998872223455678899999********9998876643233349************************************99999999999999988753 PP

>> TIGR02142  modC_ABC: molybdate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.5   0.1   3.2e-24   2.3e-22      22     215 ..      65     266 ..      53     283 .. 0.83

  Alignments for each domain:
  == domain 1    score: 77.5 bits;  conditional E-value: 3.2e-24
  TIGR02142  22 gkgvtalFGrsGsGktslirliaGLtrpdegeivldgevlqdsrkkiilppekRrvgyvFqeArLFpHlsvrenLrYGlkrara.....eerriseekvielLgiehLleR.....lpgkLsGGekqRvaigRAlLssPeLLlmDePLaaLDekrkkeilPyLerlsaelkiPilyvsHsl.devarladrvvvledGrvkaagk 215
                  +  al G sGsGktsl+ ++aG + p +g+++ +g +l+ +  +++  p  Rr g+vFq+  L + l+v+e +++  k   +     eer  + e+ +  L ++   +      + + +sGGe++R a+g  l+s+P +L +DeP + LD  +   +   L++ +++ ++ +l   H+  +++  l dr+++l +G     g+
  MMETSP1137-20121227|465_1  65 PGETLALMGPSGSGKTSLLCVLAGRL-PPKGRLE-EGSLLTLGGVQLTK-PFYRRCGFVFQDDLLLAALTVKETIEFAAKLRLPqslgdEERTRRVEQTLTQLQLNDCADTaigseKQRGVSGGERKRCAVGVELVSRPPILFLDEPTSGLDAASALSLALSLRKYAKDNEMIVLSSVHQPrSNIFSLFDRLLLLSKGSTVYYGS 266
                44889*******************76.7799*98.78888888776655.557889*********************98854431111145666778888888888776551111145679******************************************************999987368*************98766665 PP

>> TIGR01184  ntrCD: nitrate ABC transporter, ATP-binding proteins C and D
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.5   0.0   3.3e-24   2.4e-22       2     199 ..      57     267 ..      56     282 .. 0.87

  Alignments for each domain:
  == domain 1    score: 77.5 bits;  conditional E-value: 3.3e-24
  TIGR01184   2 kdvdleikkgefislighsgcgkstllnliaglekpt....sga.vilegkeitepgpdrm.vvfqnysllpwltvrenialavdavlr.dlskserreiveehielvglreaadk.....rpeqlsggmkqrvaiaralsirpklllldepfgaldaltreelqekllkiveearvtvlmvthdvdeall.lsdrvvmltngpaakigei 199
                ++v+  i+ ge ++l+g sg gk++ll ++ag   p     +g+ ++l g ++t+p   r   vfq+  ll  ltv+e i +a +  l+ +l  +er + ve+++  ++l++ ad      +   +sgg ++r a+   l  rp +l+ldep   lda +  +l   l k ++++++ vl   h+    ++ l dr+++l++g + + g +
  MMETSP1137-20121227|465_1  57 NGVSGAIEPGETLALMGPSGSGKTSLLCVLAGRLPPKgrleEGSlLTLGGVQLTKPFYRRCgFVFQDDLLLAALTVKETIEFAAKLRLPqSLGDEERTRRVEQTLTQLQLNDCADTaigseKQRGVSGGERKRCAVGVELVSRPPILFLDEPTSGLDAASALSLALSLRKYAKDNEMIVLSSVHQPRSNIFsLFDRLLLLSKGSTVYYGSV 267
                678889**************************87664233267635799********999757********************9977651578899999***********9999861111144569*******************************************************9999877766599*********99999887 PP

>> TIGR02211  LolD_lipo_ex: lipoprotein releasing system, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.4   0.0   1.3e-23   9.9e-22      12     214 ..      47     256 ..      43     262 .. 0.81

  Alignments for each domain:
  == domain 1    score: 75.4 bits;  conditional E-value: 1.3e-23
  TIGR02211  12 kegkleievlkgvsleiekgelvaivGssGsGkstllhllggldkptsGevllkGkelsklssneraklrnkklGfiyqfhhlladftalenvamPllis...kkskkeakerakellekvglekrin.....kkpselsGGerqrvaiaralvnkPklvladePtgnldkktakkifelllelnkekntallvvthdl..elakkldrvlel 214
                ke +++  vl+gvs  ie ge++a++G sGsGk+ ll +l+g   p +G+++    +l +l   + +k   ++ Gf++q   lla +t+ e + + + ++   +   +e  +r ++ l +++l++ ++     +k   +sGGer+r a+   lv++P +++ dePt+ ld+++a ++   l++  k++++ +l   h+   ++   +dr+l l
  MMETSP1137-20121227|465_1  47 KESSKRKLVLNGVSGAIEPGETLALMGPSGSGKTSLLCVLAGR-LPPKGRLE--EGSLLTLGGVQLTKPFYRRCGFVFQDDLLLAALTVKETIEFAAKLRlpqSLGDEERTRRVEQTLTQLQLNDCADtaigsEKQRGVSGGERKRCAVGVELVSRPPILFLDEPTSGLDAASALSLALSLRKYAKDNEMIVLSSVHQPrsNIFSLFDRLLLL 256
                56677788*********************************95.67889864..557889999*****************************998876551114445677788899999****9987622222456679***********************************999888888888888777777776411355555555555 PP

>> TIGR01189  ccmA: heme ABC exporter, ATP-binding protein CcmA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.5   0.0   5.3e-23   3.9e-21      12     186 ..      52     241 ..      45     249 .. 0.83

  Alignments for each domain:
  == domain 1    score: 73.5 bits;  conditional E-value: 5.3e-23
  TIGR01189  12 ervlleglsfelaaGealvveGpnGiGKttLLRilaGLlkp....esGevelndkelaeqrdelaeellylgHldglKaeLsalEnLkfyaallq......seqk.tveealekvgLsgledlpvaq.....LsAGqkrRlalarLllskaplWiLDEPttalDkegvellaellaaHlargGivllat.hq 186
                 + +l+g+s  + +Ge+l++ Gp G+GKt+LL +laG l+p    e+G++   +  ++ +++ + +++ ++   d l a+L+++E ++f a+l        +e++  ve++l++++L++++d+++ +     +s G ++R a++  l+s+ p+  LDEPt  lD+++   la  l+++++ + +++l++ hq
  MMETSP1137-20121227|465_1  52 RKLVLNGVSGAIEPGETLALMGPSGSGKTSLLCVLAGRLPPkgrlEEGSLLTLG-GVQLTKPFY-RRCGFVFQDDLLLAALTVKETIEFAAKLRLpqslgdEERTrRVEQTLTQLQLNDCADTAIGSekqrgVSGGERKRCAVGVELVSRPPILFLDEPTSGLDAASALSLALSLRKYAKDNEMIVLSSvHQ 241
                467899*******************************99872222467666553.344455445.9***********************998765455664333359***************98753333449***********************************************999998876255 PP

>> TIGR01277  thiQ: thiamine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.3   0.0   6.1e-23   4.5e-21      20     206 ..      62     260 ..      50     266 .. 0.80

  Alignments for each domain:
  == domain 1    score: 73.3 bits;  conditional E-value: 6.1e-23
  TIGR01277  20 sveaGervailGesGaGkstllnliaGflepa....sGeikvndkdhtrsapyerpvsmlfqennlfahltvrqniglGlkpgl..klna.vqkekvedvarqvGiadylerlpee.....lsGGqrqrvalarclvrekpillldepfsaldpklreemlalvkkladekkltlllvthsl.sdaaaiasqvvvvedGk 206
                ++e Ge +a++G+sG+Gk++ll ++aG l p     +G++   +     + p+ r    +fq++ l+a ltv++ i +  k  l   l   ++ ++ve+  +q+ ++d  +   ++     +sGG+r+r a+   lv   pil+ldep s ld +    +   ++k a+++++ +l   h++ s++ +  ++ +++++G 
  MMETSP1137-20121227|465_1  62 AIEPGETLALMGPSGSGKTSLLCVLAGRLPPKgrleEGSLLTLGGV-QLTKPFYRRCGFVFQDDLLLAALTVKETIEFAAKLRLpqSLGDeERTRRVEQTLTQLQLNDCADTAIGSekqrgVSGGERKRCAVGVELVSRPPILFLDEPTSGLDAASALSLALSLRKYAKDNEMIVLSSVHQPrSNIFSLFDRLLLLSKGS 260
                6889***********************9988533335665444433.34567777789******************98877665223444144568999999******99876433233449********************************998887777899**********999998356778899999999996 PP

>> TIGR00960  3a0501s02: type II secretory pathway family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.1   0.0   1.5e-22   1.1e-20       9     214 ..      46     259 ..      40     261 .. 0.79

  Alignments for each domain:
  == domain 1    score: 72.1 bits;  conditional E-value: 1.5e-22
  TIGR00960   9 kaykgaaelaldnvtvkiekGelvflvGhsGaGkstllklilgiekpsaGkirvsgqdltklrdrev..pflrrqiGivfqdfkllsdrtvydnvala..lriiGvkgr.eieervsaalekvGlkdkaka.....lPvqlsgGeqqrvaiaravvnkPallladePtgnlddelsrdi.lelleevnraGttvlvathd.enlveskrkrvltlskG 214
                k+  + ++l l++v+  ie Ge   l+G+sG+Gk++ll ++ g+  p +G+  +++  l +l + ++  pf  r+ G vfqd  ll   tv + + +a  lr+    g+ e  +rv+++l ++ l+d a +         +sgGe++r a+   +v++P++l+ dePt+ ld + ++ + l+l +  +   + vl + h+ ++ + s   r+l lskG
  MMETSP1137-20121227|465_1  46 KKESSKRKLVLNGVSGAIEPGETLALMGPSGSGKTSLLCVLAGR-LPPKGR--LEEGSLLTLGGVQLtkPF-YRRCGFVFQDDLLLAALTVKETIEFAakLRLPQSLGDeERTRRVEQTLTQLQLNDCADTaigseKQRGVSGGERKRCAVGVELVSRPPILFLDEPTSGLDAASALSLaLSLRKYAKDNEMIVLSSVHQpRSNIFSLFDRLLLLSKG 259
                5667788999****************************988876.566786..566677777777652255.5568******************998733566555555156789**********9987641111145679**********************************9997356666667788889989997345566777788888887 PP

>> TIGR01842  type_I_sec_PrtD: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.7   0.0   2.6e-22   1.9e-20     325     536 ..      47     266 ..      21     271 .. 0.81

  Alignments for each domain:
  == domain 1    score: 70.7 bits;  conditional E-value: 2.6e-22
  TIGR01842 325 vppeekkktlkgisfalkaGealaiiGpsgsGkssLarllvGvwlpa....sGs.vrlDgadlkqwdretlGksiGYlPqd.veLfeGtvaeniaRfeenadaekvieaaklagvheli..lrlpkGYdteigeg.GaaLsgGqrqRiaLaRalygdPklvvLDePnanLDeeGeqalakalke.lkarkitvvvith..rpsllelvdkilvlkdGalkafGe 536
                 +++++k +l+g+s a+++Ge+la++GpsgsGk+sL  +l G  +p+    +Gs + l g++l    ++ + ++ G++ qd + L + tv+e i    +   ++++ +  +   v + +  l+l++  dt+ig++   ++sgG r+R a+   l   P ++ LDeP + LD++    la  l + +k ++++v+   h  r ++ +l d++l+l++G+   +G+
  MMETSP1137-20121227|465_1  47 KESSKRKLVLNGVSGAIEPGETLALMGPSGSGKTSLLCVLAGRLPPKgrleEGSlLTLGGVQL----TKPFYRRCGFVFQDdLLLAALTVKETIEFAAKLRLPQSLGDEERTRRVEQTLtqLQLNDCADTAIGSEkQRGVSGGERKRCAVGVELVSRPPILFLDEPTSGLDAASALSLALSLRKyAKDNEMIVLSSVHqpRSNIFSLFDRLLLLSKGSTVYYGS 266
                56678889**********************************998741111333123444444....356899*****99724555679****987777777999999999999998872356789******9761678***********************************999999998725666677776667335689****************9996 PP

>> TIGR03873  F420-0_ABC_ATP: proposed F420-0 ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.5   0.0   1.5e-21   1.1e-19      11     221 ..      50     267 ..      43     273 .. 0.78

  Alignments for each domain:
  == domain 1    score: 68.5 bits;  conditional E-value: 1.5e-21
  TIGR03873  11 aggrlivddvdvtaPaGaltgllGPnGsGkstllrllaGllap....daGev.dlagadlkalsrrararrvalveqdsdaevplsvrdvvalGriPhrslfaadsdedaevvdralarvelssladrdl.....stlsGGerqrvhlaralaqePklllldePtnhldvsaqlellalvrela.aegvtvvvalhdl.nlaasvcdhvvvldgGrvvaaGpp 221
                  ++l++++v     +G+  +l+GP GsGk+ ll +laG l p    ++G++ +l+g++l+        rr   v qd    + l+v++ + +     + +  +d  e +  v+++l++ +l++ ad ++       +sGGer+r  +   l  +P +l+ldePt  ld ++ l+l   +r+ a ++++ v+ ++h   +   s+ d++++l++G  v  G++
  MMETSP1137-20121227|465_1  50 SKRKLVLNGVSGAIEPGETLALMGPSGSGKTSLLCVLAGRLPPkgrlEEGSLlTLGGVQLTKPF----YRRCGFVFQDDLLLAALTVKETIEFAAKLRLPQSLGDE-ERTRRVEQTLTQLQLNDCADTAIgsekqRGVSGGERKRCAVGVELVSRPPILFLDEPTSGLDAASALSLALSLRKYAkDNEMIVLSSVHQPrSNIFSLFDRLLLLSKGSTVYYGSV 267
                567899**********************************988333335554466666665433....45678899*************99876443333333343.4556677788888888777765522221689*************************************9999999984567788899**9615567899*********99988876 PP

>> TIGR02204  MsbA_rel: ABC transporter, permease/ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.8   0.0   2.2e-21   1.6e-19     353     557 ..      53     266 ..      46     280 .. 0.83

  Alignments for each domain:
  == domain 1    score: 67.8 bits;  conditional E-value: 2.2e-21
  TIGR02204 353 qkaldgldltvrpGetvalvGPsGaGkstllelllrfydPq....sGai.lldGvdlreldpeelrerlalvpqdsalfaa.svleniryGrpdasdeeveaaakaaeadefisk..lpeGydtllG.ergvtLsGGqkqriaiarailkdapiLLLdeatsaLdaeseqlvqqaleelmkgrttlvia..h..rLatvlkadrivvldkGriveqGt 557
                +++l+g++ +++pGet+al+GPsG+Gk+ ll +l     P+    +G++  l+Gv+l+    + + +r  +v qd  l+aa  v+e i +       + + +  ++ + ++ +++  l++  dt +G e+   +sGG ++r a+   ++   piL+Lde ts Lda s   +  +l +  k+   +v++  h  r       dr++ l kG  v  G+
  MMETSP1137-20121227|465_1  53 KLVLNGVSGAIEPGETLALMGPSGSGKTSLLCVLAGRLPPKgrleEGSLlTLGGVQLT----KPFYRRCGFVFQDDLLLAAlTVKETIEFAAKLRLPQSLGDEERTRRVEQTLTQlqLNDCADTAIGsEKQRGVSGGERKRCAVGVELVSRPPILFLDEPTSGLDAASALSLALSLRKYAKDNEMIVLSsvHqpRSNIFSLFDRLLLLSKGSTVYYGS 266
                6799****************************99988877433334554257888775....45788899999999888764899******999999999888888888888875226899*****9678889*************************************************999998633544556666789999999999998886 PP

>> TIGR02315  ABC_phnC: phosphonate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.1   0.0   2.2e-21   1.6e-19      12     229 ..      50     266 ..      44     272 .. 0.82

  Alignments for each domain:
  == domain 1    score: 68.1 bits;  conditional E-value: 2.2e-21
  TIGR02315  12 pngkqalknvnleikkGelvaviGlsGaGkstllrsinrlveissgsillegkevtklkkkelrk.lrkkigmifqeynlierltvlenvLsgrlgakstlksllglfseedkekAlelLervglaelaa.....kradqLsGGqqqRvaiaRalaqqpklilaDEPiasLDpksskqvmdllkrinkekgitvivnlHqvd.lakkyadrivglkageivfdga 229
                ++ k +l+ v+ +i++Ge +a++G+sG+Gk+ ll  + +   + +g+  le+ ++ +l + +l k + ++ g++fq+  l++ ltv e +    ++ak  l + lg   ee +++  ++L++++l++ a+     ++   +sGG+++R a+   l+ +p +++ DEP++ LD +s+  +   l++ +k+++++v+ ++Hq      +  dr++ l +g+ v++g+
  MMETSP1137-20121227|465_1  50 SKRKLVLNGVSGAIEPGETLALMGPSGSGKTSLLCVLAGRL-PPKGR--LEEGSLLTLGGVQLTKpFYRRCGFVFQDDLLLAALTVKETI---EFAAKLRLPQSLG--DEERTRRVEQTLTQLQLNDCADtaigsEKQRGVSGGERKRCAVGVELVSRPPILFLDEPTSGLDAASALSLALSLRKYAKDNEMIVLSSVHQPRsNIFSLFDRLLLLSKGSTVYYGS 266
                5677899***************************9887654.44555..56667777777666543899****************98876...4555555555444..56777778888888888887752212256778***********************************************************9751456889*************986 PP

>> TIGR02769  nickel_nikE: nickel import ATP-binding protein NikE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.6   0.0   1.2e-19   8.5e-18      20     231 ..      49     263 ..      43     280 .. 0.84

  Alignments for each domain:
  == domain 1    score: 62.6 bits;  conditional E-value: 1.2e-19
  TIGR02769  20 kkqrkavldnvslsleeGetvallGrsGaGkstlarlllGlekPakGevsfrGqdlakldrkqrkafrrdvqlvfqds..isavnprksvreiigePlrhltsldeserkariaellelvelrs..evl..dklPrqlsGGqlqriniaralavePklivldeavsnldlvlqasilellkklkqefGlaylfithdlr.lvqkfaqrvlvldeGqive 231
                 ++rk vl++vs ++e Get+al+G sG+Gk+ l  +l G   P kG++  +G  l+    + +k f r   +vfqd    +a+  +++++   +  lr  +sl + er +r+++ l +++l++  +++    + r +sGG  +r ++   l  +P ++ lde  s ld    +s+   l+k  ++  + +l   h  r  + ++ +r+l+l +G  v 
  MMETSP1137-20121227|465_1  49 SSKRKLVLNGVSGAIEPGETLALMGPSGSGKTSLLCVLAGR-LPPKGRLE-EGSLLTLGGVQLTKPFYRRCGFVFQDDllLAALTVKETIEF--AAKLRLPQSLGDEERTRRVEQTLTQLQLNDcaDTAigSEKQRGVSGGERKRCAVGVELVSRPPILFLDEPTSGLDAASALSLALSLRKYAKDNEMIVLSSVHQPRsNIFSLFDRLLLLSKGSTVY 263
                568999*******************************9995.67899986.677666666677899***********722578888888875..56799999******************99862222212566788************************************999999999999999988888888662688999******9998876 PP

>> TIGR01186  proV: glycine betaine/L-proline transport ATP binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.6   0.0     1e-19   7.6e-18       6     212 ..      53     265 ..      48     270 .. 0.85

  Alignments for each domain:
  == domain 1    score: 62.6 bits;  conditional E-value: 1e-19
  TIGR01186   6 klgvndvdleieeGeiiviiGlsGsGkstlvrllnrliePtaGkilidGediaeisdaelrevrrkkiamviqkialfPhmtildnislglel...lkideqerkekalealklvdleeyedry.....PdelsGGmqqrvGlaralaaePdlllmdeafsaldPlirdelqdelvklqkklqktivfithd.ldealrlgdrivilkaGeivqvG 212
                kl +n v+ +ie Ge + ++G+sGsGk++l+ +l   + P +G++  +  ++  +  ++l +   ++ ++v+q+  l+   t+++ i+++ +l   + + ++er ++  ++l +++l++ +d+         +sGG ++r  +   l   P++l++de+ s ld     +l   l k  k+ +  ++   h    + + l dr+ +l +G  v  G
  MMETSP1137-20121227|465_1  53 KLVLNGVSGAIEPGETLALMGPSGSGKTSLLCVLAGRL-PPKGRL--EEGSLLTLGGVQLTKPFYRRCGFVFQDDLLLAALTVKETIEFAAKLrlpQSLGDEERTRRVEQTLTQLQLNDCADTAigsekQRGVSGGERKRCAVGVELVSRPPILFLDEPTSGLDAASALSLALSLRKYAKDNEMIVLSSVHQpRSNIFSLFDRLLLLSKGSTVYYG 265
                566788999*********************99987555.778985..555678899******9*****************************955557889****************9998864221114569********************************************9888777666666762466779**********9999776 PP

>> TIGR00958  3a01208: antigen peptide transporter 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.3   0.0   1.3e-18   9.7e-17     493     692 ..      52     262 ..      48     269 .. 0.75
   2 ?   -2.2   0.1       2.7     2e+02     140     153 ..     426     439 ..     357     545 .. 0.44

  Alignments for each domain:
  == domain 1    score: 58.3 bits;  conditional E-value: 1.3e-18
  TIGR00958 493 dkpvlkdLtftlepGevvalVGPsGsGKStvaallenlYqPtg....Gqv.llDgkplkeydhkylhrkvalVgqEPvlf.sgsvreNiaYGltktedeevtaaakaanahdFiselekg..ydtevg.ekGsqlsgGqkqriAiARALvrkPrvLiLDeAtSALDa..eveqllqesksaksrtvlli..ah..rLstvekadkilvlkkgsvv 692
                +k vl++ +  +epGe+ al GPsGsGK +   +l     P+g    G++ +l g++l++    ++ r+ + V q+ +l  + +v+e i +  +    +++    ++  +++ +++l+ +   dt +g ek   +sgG ++r A+   Lv +P +L LDe tS LDa  +   +l   k ak+  ++++  +h  r ++    d+ l+l+kgs v
  MMETSP1137-20121227|465_1  52 RKLVLNGVSGAIEPGETLALMGPSGSGKTSLLCVLAGRLPPKGrleeGSLlTLGGVQLTK---PFY-RRCGFVFQDDLLLaALTVKETIEFAAKLRLPQSLGDEERTRRVEQTLTQLQLNdcADTAIGsEKQRGVSGGERKRCAVGVELVSRPPILFLDEPTSGLDAasALSLALSLRKYAKDNEMIVLssVHqpRSNIFSLFDRLLLLSKGSTV 262
                5789********************************999996333337752578887764...555.5677787777665167*********9999899999999999999999877533349****95677889********************************553333343344455555444311442234555666666666666655 PP

  == domain 2    score: -2.2 bits;  conditional E-value: 2.7
  TIGR00958 140 eeqsetadlllrLL 153
                ++  ++++++lrL+
  MMETSP1137-20121227|465_1 426 QQAFNAQNTVLRLF 439
                44444444444443 PP

>> TIGR03410  urea_trans_UrtE: urea ABC transporter, ATP-binding protein UrtE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.3   0.0   1.1e-18   7.9e-17      13     216 ..      53     267 ..      45     275 .. 0.79

  Alignments for each domain:
  == domain 1    score: 59.3 bits;  conditional E-value: 1.1e-18
  TIGR03410  13 sevlrdvslevekgevvavlGrngvGkttllkalvgllkvksGeielegeditklkpeervkaGiayvpqGreifpkltveenlelglealkkk.......ekkipeeiyelFPvlkeml.....kRrgGdLsGGqqqqlaiaRaLvtePklllLDePteGiqPsiikeiekvikelakekdlaill.veqvldfaleladrylvlerGevvaegek 216
                  vl++vs  +e ge++a++G  g Gkt+ll  l g l+ k    e +  ++  ++ ++   +  ++v q   ++++ltv+e +e +++ +  +       ++++++++ +l   l++       + +   +sGG ++  a++  Lv++P +l LDePt G+  +    ++  +++ ak++++ +l  v q  +   +l dr+l+l++G++v  g+ 
  MMETSP1137-20121227|465_1  53 KLVLNGVSGAIEPGETLALMGPSGSGKTSLLCVLAGRLPPKGRLEEGSLLTLGGVQLTKPFYRRCGFVFQDDLLLAALTVKETIEFAAKLRLPQslgdeerTRRVEQTLTQL--QLNDCAdtaigSEKQRGVSGGERKRCAVGVELVSRPPILFLDEPTSGLDAASALSLALSLRKYAKDNEMIVLSsVHQPRSNIFSLFDRLLLLSKGSTVYYGSV 267
                569***********************************986433333344555566666667789********************999876433355333345555555444..233433000114455569**************************************************9998537899999***************9988765 PP

>> TIGR03522  GldA_ABC_ATP: gliding motility-associated ABC transporter ATP-binding subunit GldA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.1   0.0   1.4e-18     1e-16      15     212 ..      53     263 ..      43     281 .. 0.85

  Alignments for each domain:
  == domain 1    score: 59.1 bits;  conditional E-value: 1.4e-18
  TIGR03522  15 qkaldevsfeaekGeivGflGPnGaGkstlmkiltgylkads....GsvavagedvlknslevrkniGylPehnPlyldlyvreylefsaal...yklkgrklkkrveelielvGlkaeqhkkiga.....lskGyrqrvGlakallhdPkvlildePttGldPnqlveirevikeiakdktvilsthimq...evealcdrviiinkGkiva 212
                + +l+ vs ++e+Ge + ++GP G+Gk++l+ +l+g l++++    Gs+   g   l+++    +  G++ + + l   l v+e +ef a+l     l ++++ +rve+ + +  l+  +   ig      +s G r+r  +   l+  P +l ldePt+Gld    + +   +++ akd  +i+ + + q   ++ +l dr++++ kG  v 
  MMETSP1137-20121227|465_1  53 KLVLNGVSGAIEPGETLALMGPSGSGKTSLLCVLAGRLPPKGrleeGSLLTLGGVQLTKP--FYRRCGFVFQDDLLLAALTVKETIEFAAKLrlpQSLGDEERTRRVEQTLTQLQLNDCADTAIGSekqrgVSGGERKRCAVGVELVSRPPILFLDEPTSGLDAASALSLALSLRKYAKDNEMIVLSSVHQprsNIFSLFDRLLLLSKGSTVY 263
                5589***********************************975443388877776655555..67899************************944447889999**********99998887766633333499***********************************************999887777773335677889999999998876 PP

>> TIGR03797  NHLM_micro_ABC2: NHLM bacteriocin system ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.6   0.0   4.9e-18   3.6e-16     465     631 ..      52     224 ..      46     266 .. 0.81

  Alignments for each domain:
  == domain 1    score: 56.6 bits;  conditional E-value: 4.9e-18
  TIGR03797 465 gplvLddvslkiepGefvaivGaSGsGKStllrlLLgFekPesGsvlyDGq..dlekldv.qavRrqlGvVLQngrllsg.sileniaggasltldeaw.eaarmagleeDikamPmg..lhTvi.segggtlSGGQrQRlliAralvrkPrillfDEATSALDNrtQaiVsesl 631
                 +lvL+ vs  iepGe +a++G+SGsGK +ll +L g   P +G +  +G    l ++++ +   r++G V+Q+  ll++ ++ e+i  +a+l l +   +  r+  +e+ ++++ +     T i se   ++SGG r+R  +   lv++P il++DE TS LD  +      sl
  MMETSP1137-20121227|465_1  52 RKLVLNGVSGAIEPGETLALMGPSGSGKTSLLCVLAGR-LPPKGRLE-EGSllTLGGVQLtKPFYRRCGFVFQDDLLLAAlTVKETIEFAAKLRLPQSLgDEERTRRVEQTLTQLQLNdcADTAIgSEKQRGVSGGERKRCAVGVELVSRPPILFLDEPTSGLDAASALSLALSL 224
                579*******************************9996.56667654.454113445554145789********998876378899999999888777625567778999999988753367877589999*********************************88766666665 PP

>> TIGR02203  MsbA_lipidA: lipid A export permease/ATP-binding protein MsbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.5   0.0   5.2e-18   3.8e-16     344     547 ..      51     262 ..      29     269 .. 0.74

  Alignments for each domain:
  == domain 1    score: 56.5 bits;  conditional E-value: 5.2e-18
  TIGR02203 344 ddrealdsislkveaGevvalvGrsGsGkstlvnllpRFy....epdsGeil.lDgvdladlkLasLRrqvalvsqdvvLF.ddtiaenvaYgel....eevdeaeveealaaaylkdlvdklpeGldtevGengsk.LsGGqRqRlaiaRallkdaPiLiLDeatsaLDneseRlvqaaLerlmkgRttlvia..h..RLstiekaDrivvlddGkiv 547
                + + +l+++s  +e+Ge++al+G+sGsGk++l+ +l+  +      ++G++l l gv+l +       r+  +v qd +L    t+ e + ++++    +++ ++e  + +++  l++l  +l++  dt +G++  + +sGG R+R a+   l+   PiL LDe ts LD+ s   +  +L +  k+   +v++  h  R       Dr++ l +G  v
  MMETSP1137-20121227|465_1  51 KRKLVLNGVSGAIEPGETLALMGPSGSGKTSLLCVLAGRLppkgRLEEGSLLtLGGVQLTK----PFYRRCGFVFQDDLLLaALTVKETIEFAAKlrlpQSLGDEERTRRVEQT-LTQL--QLNDCADTAIGSEKQRgVSGGERKRCAVGVELVSRPPILFLDEPTSGLDAASALSLALSLRKYAKDNEMIVLSsvHqpRSNIFSLFDRLLLLSKGSTV 262
                4556899************************998876444011144667665356666653....4677899999976655167*********994444334444433333333.2332..678899*****8776549***********************************999999999999988888752233244444556666666666665 PP

>> TIGR01846  type_I_sec_HlyB: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.0   0.0   6.5e-18   4.8e-16     469     675 ..      52     267 ..      24     281 .. 0.77

  Alignments for each domain:
  == domain 1    score: 56.0 bits;  conditional E-value: 6.5e-18
  TIGR01846 469 spevlsnlsldikaGeviGivGpsGsGkstl.tkllqrlyvPekGrv....lvdgvdlaladPawlrrqvgvvlqenvlfsr.sirdnialakPaiseekviaaaklaGahdfis..elkqGyetevg.ekGaalsGGqrqrialaralvanPrilildeatsaldyeseavimrnlreickgrtviiia..h..rlstvraadrilvlekGkivesGkh 675
                   vl+ +s  i++Ge++ ++GpsGsGk+ l   l  rl  P kGr+    l+    + l+ P  + r+ g v+q+++l+   ++++ i  a      + +    +    ++ ++  +l++  +t +g ek   +sGG r+r a+   lv+ P il lde ts ld+ s  ++   lr+ +k+  +i+++  h  r +     dr+l+l kG  v  G+ 
  MMETSP1137-20121227|465_1  52 RKLVLNGVSGAIEPGETLALMGPSGSGKTSLlCVLAGRL--PPKGRLeegsLLTLGGVQLTKP--FYRRCGFVFQDDLLLAAlTVKETIEFAAKLRLPQSLGDEERTRRVEQTLTqlQLNDCADTAIGsEKQRGVSGGERKRCAVGVELVSRPPILFLDEPTSGLDAASALSLALSLRKYAKDNEMIVLSsvHqpRSNIFSLFDRLLLLSKGSTVYYGSV 267
                4569999*********************77615566676..6677742222222334445555..45889*******9997548999999876554444555555555555554411677899**99758999*************************************************999998753355588899999*********99988875 PP

>> TIGR00972  3a0107s01c2: phosphate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.0   0.0     1e-17   7.7e-16      14     204 ..      53     241 ..      44     271 .. 0.77

  Alignments for each domain:
  == domain 1    score: 56.0 bits;  conditional E-value: 1e-17
  TIGR00972  14 kealkdvnleikknkvtaliGpsGcGkstllrslnrlndlveevrieGkvl.legkdiydkkldvvelrkkvGmvfqkpnpfp.msiydnvayglrlk..gikdkkeldeiveesLkkaalwdevkdkl.kksalsLsGGqqqrlciaralavePevlLlDePtsaLDpiatekieeliqeLkkkytivivthnmq 204
                k +l+ v+  i+  +  al+GpsG+Gk++ll  l        +   eG++l l g ++++       + ++ G vfq     +  ++ + + ++ +l+  +    +e  ++ve++L++  l d   + + +++  ++sGG ++r ++   l  +P +l lDePts LD+ ++ ++   +++ +k+  +++     q
  MMETSP1137-20121227|465_1  53 KLVLNGVSGAIEPGETLALMGPSGSGKTSLLCVLAGRLPPK-GRLEEGSLLtLGGVQLTKP------FYRRCGFVFQDDLLLAaLTVKETIEFAAKLRlpQSLGDEERTRRVEQTLTQLQLNDCADTAIgSEKQRGVSGGERKRCAVGVELVSRPPILFLDEPTSGLDAASALSLALSLRKYAKDNEMIVLSSVHQ 241
                66899999***********************9997433333.3334566551556666655......7789******98887659********977661145556788899***********99988883456789****************************************99999999988877654333 PP

>> TIGR01978  sufC: FeS assembly ATPase SufC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.8   0.0   1.2e-17   9.1e-16      11     229 ..      51     267 ..      44     278 .. 0.79

  Alignments for each domain:
  == domain 1    score: 55.8 bits;  conditional E-value: 1.2e-17
  TIGR01978  11 edkeiLkglnlevkkGevhaimGpnGsGkstLskvlagh..ekyevtsGeiklkgqdlleleveeraraGlflafqapeeipGvsnkeflrsalnavrkargeeeldllefekllkeklellelde...elleRslneGfsGGekkrneilqlallePklaiLDeiDsGlDvDalkivaegvnklreeekalliit.hyerllelikPdvvhvlldGrivksGdv 229
                + k +L+g++ ++++Ge+ a+mGp GsGk  L  vlag+  +k ++++G++   g   l        r G    fq    ++ +++ke +  a++ +      ++l   e ++ ++++l +l+l+    + +  +   G sGGe+kr+ +   ++ +P +  LDe  sGlD  +   +a  + k++++++ +++ + h+ r       d + +l +G  v  G+v
  MMETSP1137-20121227|465_1  51 KRKLVLNGVSGAIEPGETLALMGPSGSGKTSLLCVLAGRlpPKGRLEEGSLLTLGGVQLTKPF--YRRCGF--VFQDDLLLAALTVKETIEFAAKLRL----PQSLGDEERTRRVEQTLTQLQLNDcadTAIGSEKQRGVSGGERKRCAVGVELVSRPPILFLDEPTSGLDAASALSLALSLRKYAKDNEMIVLSSvHQPRSNIFSLFDRLLLLSKGSTVYYGSV 267
                45789*********************************8667999****98766654333333..345553..59***************99999887....34455566666666666666666544377888899**************999******************99999999999999997777766524444333334688888888888877765 PP

>> TIGR03411  urea_trans_UrtD: urea ABC transporter, ATP-binding protein UrtD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.1   0.0   1.2e-17     9e-16      18     226 ..      56     267 ..      52     271 .. 0.85

  Alignments for each domain:
  == domain 1    score: 56.1 bits;  conditional E-value: 1.2e-17
  TIGR03411  18 lndlslsveegelrviiGpnGaGkttllDvitGktrpdeGsvlfkgk.dltklkeaeiarlGigRkfqkpsvfeeltvlenlelalkadksvlallfarlskeekerieevleligLeekadkkagl.....LshGqkqwLeigmllvqepkllllDePvaGmtdeetektaellkelakersvvvve..h.DmefvrelaekvtvlheGkvlaeGsl 226
                ln +s ++e+ge  +++Gp G+Gkt ll v++G+  p +G++   +   l +++ ++      g  fq   ++  ltv+e +e a+k   ++ ++l    ++e+++r+e++l++++L++ ad+  g+     +s G++++  +g+ lv +p +l+lDeP++G+ ++   + a  l++ ak++ ++v+   h   + + +l +++  l++G+++  Gs+
  MMETSP1137-20121227|465_1  56 LNGVSGAIEPGETLALMGPSGSGKTSLLCVLAGRL-PPKGRLEEGSLlTLGGVQLTKPFYRRCGFVFQDDLLLAALTVKETIEFAAKL--RLPQSL---GDEERTRRVEQTLTQLQLNDCADTAIGSekqrgVSGGERKRCAVGVELVSRPPILFLDEPTSGLDAASALSLALSLRKYAKDNEMIVLSsvHqPRSNIFSLFDRLLLLSKGSTVYYGSV 267
                6788889***************************9.66799888777788888888888889999******************99865..567777...6788999************999987664334449****************************************************975223134566677777777777777777765 PP

>> TIGR03771  anch_rpt_ABC: anchored repeat-type ABC transporter, ATP-binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.4   0.1   1.7e-16   1.2e-14       3     187 ..      63     257 ..      62     268 .. 0.81

  Alignments for each domain:
  == domain 1    score: 52.4 bits;  conditional E-value: 1.7e-16
  TIGR03771   3 vdkGellgllGpnGaGkttllrailglikvakGsvkvagkssrkgrreiGyvpqrhefawdfpidveqtvlsGragliGllrrpkk....adfaavadalervklteladrpvGe.....lsGGqrqrvlvaralavkpslllldepftGldlpsqellvelfeelagegtailmt.thdl.aeavatcdrvvlln 187
                +++Ge l+l+Gp G+Gkt+ll  + g ++  kG+++ ++  +  g +      +r  f ++  + ++   ++        lr p+     +  + v+++l + +l++ ad ++G      +sGG+r+r  v   l  +p +l+ldep +Gld  s  +l+  +++ a++++ i+++  h+  ++  +  dr++ll 
  MMETSP1137-20121227|465_1  63 IEPGETLALMGPSGSGKTSLLCVLAGRLP-PKGRLEEGSLLTLGGVQLTKPFYRRCGFVFQDDLLLAALTVKETIEFAAKLRLPQSlgdeERTRRVEQTLTQLQLNDCADTAIGSekqrgVSGGERKRCAVGVELVSRPPILFLDEPTSGLDAASALSLALSLRKYAKDNEMIVLSsVHQPrSNIFSLFDRLLLLS 257
                679******************99989888.799999888777777776667777888888777777777777777888888887642211456889******************6555558***************************************999999999887776515664134567788888875 PP

>> TIGR02314  ABC_MetN: D-methionine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.6   0.0     2e-16   1.5e-14      14     226 ..      49     268 ..      43     282 .. 0.84

  Alignments for each domain:
  == domain 1    score: 51.6 bits;  conditional E-value: 2e-16
  TIGR02314  14 gdkkikaldnvslfvpkgqifgvigasgagkstlircvnllekptsgavivdgkdlttlsnaelvka.rrqigmifqhfnllssrtvfgnvalp..lele.ntpkekikrkvtellalvglsdkkdsy.....psnlsggqkqrvaiaralasepkvllcdeatsaldpattqsilellkeinrrlgltillithe.mdvvkricdevavidkgeliekgtvs 226
                ++k+   l+ vs  +  g+ + ++g sg+gk++l+ cv     p +g +  +g  l tl   +l+k   r+ g++fq   ll++ tv + + +   l l  +   e+  r+v++ l+ + l+d  d+         +sgg+++r a+   l s p +l+ de ts ld a++ s+   l++  +  ++ +l   h+    + ++ d++ +++kg  +  g+v+
  MMETSP1137-20121227|465_1  49 SSKRKLVLNGVSGAIEPGETLALMGPSGSGKTSLL-CVLAGRLPPKGRL-EEG-SLLTLGGVQLTKPfYRRCGFVFQDDLLLAALTVKETIEFAakLRLPqSLGDEERTRRVEQTLTQLQLNDCADTAigsekQRGVSGGERKRCAVGVELVSRPPILFLDEPTSGLDAASALSLALSLRKYAKDNEMIVLSSVHQpRSNIFSLFDRLLLLSKGSTVYYGSVA 268
                56666789***********************9986.9999999***984.455.68889******963799******************9865511555414457788899999*******9999864211113469*************************************9999999999999999998887346788999999999999999988886 PP

>> TIGR03740  galliderm_ABC: lantibiotic protection ABC transporter, ATP-binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.5   0.0   2.9e-16   2.1e-14       9     207 ..      49     266 ..      43     271 .. 0.82

  Alignments for each domain:
  == domain 1    score: 51.5 bits;  conditional E-value: 2.9e-16
  TIGR03740   9 kfkkqavvnnvslkvkknsvygllGpnGaGkstllklltGllrk....tsGei.lldgrewtrkdlkkiGsliesPalyenltarenlkvrtlll...gl....pesrieevlkivdlen.....tekkkakqfslGmkqrlGiaiallnkPkllildePtnGldPlGiqelreliksfpekGitvilss.hi.lsevelladhiGiiseGklkyekk 207
                + k++ v+n vs +++  +  +l+Gp G+Gk++ll +l+G l +    ++G++ +l g ++t+   +  G + ++  l   lt +e ++  ++l+   +l     + r+e+ l+ ++l++     ++  k +  s G ++r  + + l+ +P +l ldePt Gld      l   ++ + ++   ++lss h   s++  l d + ++s+G   y ++
  MMETSP1137-20121227|465_1  49 SSKRKLVLNGVSGAIEPGETLALMGPSGSGKTSLLCVLAGRLPPkgrlEEGSLlTLGGVQLTKPFYRRCGFVFQDDLLLAALTVKETIEFAAKLRlpqSLgdeeRTRRVEQTLTQLQLNDcadtaIGSEKQRGVSGGERKRCAVGVELVSRPPILFLDEPTSGLDAASALSLALSLRKYAKDNEMIVLSSvHQpRSNIFSLFDRLLLLSKGSTVYYGS 266
                45778899*********************************97622224677526899******************************99988752223321113468999999999987222223456777899**************************************999999999988888884433699999999999999998888665 PP

>> TIGR02324  CP_lyasePhnL: phosphonate C-P lyase system protein PhnL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.8   0.0   4.4e-16   3.2e-14      18     207 ..      50     240 ..      41     248 .. 0.81

  Alignments for each domain:
  == domain 1    score: 50.8 bits;  conditional E-value: 4.4e-16
  TIGR02324  18 GvklpvlkevsleveaGelvalsGksGaGkstllkslyanYlpesgrilvrhegeivdlvkaserevlevRrktigyvsq...fLrviPRvsalevvaepllelGvereearakakellarlnipe....rLWslaPatfsGGekqRvniaraliadrPiLLLdePtasLdaanrk.vvvelikeakargaaligifh 207
                 ++  vl+ vs ++e Ge +al+G+sG+Gk +ll +l a  lp  gr+    eg+++ l  ++  +  + R    g+v q    L ++  + ++e +a+  l + + +ee + ++++ l++l++ +     + s      sGGe++R  +   l++  PiL LdePt+ Ldaa      + l k ak + + +++ +h
  MMETSP1137-20121227|465_1  50 SKRKLVLNGVSGAIEPGETLALMGPSGSGKTSLLCVL-AGRLPPKGRL---EEGSLLTLGGVQLTKPFYRR---CGFVFQddlLLAALTVKETIEFAAKLRLPQSLGDEERTRRVEQTLTQLQLNDcadtAIGSEKQRGVSGGERKRCAVGVELVSRPPILFLDEPTSGLDAASALsLALSLRKYAKDNEMIVLSSVH 240
                5567799*************************99766.5556666886...57999988888888777755...899988666789999999*******************************98722223555667789*******************************987640445566666766666666666 PP

>> TIGR03005  ectoine_ehuA: ectoine/hydroxyectoine ABC transporter, ATP-binding protein EhuA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.1   0.0     1e-14   7.6e-13      14     227 ..      54     263 ..      45     269 .. 0.76

  Alignments for each domain:
  == domain 1    score: 46.1 bits;  conditional E-value: 1e-14
  TIGR03005  14 tvldglelevaaGekvaliGpsGsGkstilrilmtletideGsikvegeqlyhmkgrkGklvpadekhl.rkvrekiGmvfqsfnlfphktvldnvteapvlvk..GvaraeaekravelldmvGladkadal...paq..lsGGqkqrvaiaralalrpkvllfdevtsaldpelveevlnvlrrlasetdltmllvthemgf.arefadrvlffdkGkive 227
                 vl+g++  +++Ge +al+GpsGsGk+++l +l    +  +G+++            +G+l+      l +    + G+vfq   l+   tv + +  a  l +   +   e  +r  + l  + l d ad+      q  +sGG+++r a+   l  rp +l++de+ts ld      +   lr+ a+++++ +l   h+ +     + dr+l++ kG  v 
  MMETSP1137-20121227|465_1  54 LVLNGVSGAIEPGETLALMGPSGSGKTSLLCVLAGRLP-PKGRLE------------EGSLLTLGGVQLtKPFYRRCGFVFQDDLLLAALTVKETIEFAAKLRLpqSLGDEERTRRVEQTLTQLQLNDCADTAigsEKQrgVSGGERKRCAVGVELVSRPPILFLDEPTSGLDAASALSLALSLRKYAKDNEMIVLSSVHQPRSnIFSLFDRLLLLSKGSTVY 263
                589****************************9975332.234332............34444443333304577899*****************999876554411444444445555566666666666643111333449********************************999999999*****************9875156899*****99998765 PP

>> TIGR03415  ABC_choXWV_ATP: choline ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.3   0.0   4.1e-15     3e-13      38     197 ..      54     214 ..      46     262 .. 0.86

  Alignments for each domain:
  == domain 1    score: 47.3 bits;  conditional E-value: 4.1e-15
  TIGR03415  38 lgvadasldveeGeilvlmGlsGsGkssllravnglnpvsrGkvlvkdedkevdvakcdeatlrklrtkrvsmvfqkfallPWrtveenvafGlel...sGvakaerrkrveeqlelvglaeWadk.....kvgelsGGmqqrvGlarafateadillmdePfsaldP 197
                l  +++s  +e Ge l lmG sGsGk+sll  + g       ++  k   +e  + ++   +l k   +r   vfq   ll  +tv+e + f   l   + ++++er +rve+ l  ++l++ ad+     k   +sGG ++r  +   +    +il++deP s ld 
  MMETSP1137-20121227|465_1  54 LVLNGVSGAIEPGETLALMGPSGSGKTSLLCVLAG-------RLPPKGRLEEGSLLTLGGVQLTKPFYRRCGFVFQDDLLLAALTVKETIEFAAKLrlpQSLGDEERTRRVEQTLTQLQLNDCADTaigseKQRGVSGGERKRCAVGVELVSRPPILFLDEPTSGLDA 214
                556889999********************976654.......444444445556778888889999999***********************9887446699******************9999862222256679******************************96 PP

>> TIGR03269  met_CoM_red_A2: methyl coenzyme M reductase system, component A2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.2   0.0     7e-15   5.1e-13     301     523 ..      57     278 ..      48     283 .. 0.83

  Alignments for each domain:
  == domain 1    score: 46.2 bits;  conditional E-value: 7e-15
  TIGR03269 301 dnvslevkekeifGlvGtsGaGkttlskilaGvleptsGevevrvGdewvdmtkkgvlerGrakkyiGllhqeyalyphrtvlenlteaiglelpdela....krkavivlkavGfdeekakeildklpdelseGerhrvalaqvlikeprivildeptGtmdpitkvkvaesilkareeleetfvivshd.mdfvlevcdraalmrdGkivkiGdpeeiveelteee 523
                ++vs  ++ +e   l+G sG+Gkt+l  +laG l+p  G++e     e   +t  gv+      +  G+++q+  l +  tv e +  a  l lp+ l+    +r+   +l +  +++   + i       +s Ger+r+a+   l+  p i+ ldept  +d  +  ++a s+ k  ++ e   +   h+    + ++ dr  l+ +G  v  G+ +  v  + e+ 
  MMETSP1137-20121227|465_1  57 NGVSGAIEPGETLALMGPSGSGKTSLLCVLAGRLPPK-GRLE-----EGSLLTLGGVQLTKPFYRRCGFVFQDDLLLAALTVKETIEFAAKLRLPQSLGdeerTRRVEQTLTQLQLNDCADTAIGSEKQRGVSGGERKRCAVGVELVSRPPILFLDEPTSGLDAASALSLALSLRKYAKDNEMIVLSSVHQpRSNIFSLFDRLLLLSKGSTVYYGSVAGAVPYIEEHA 278
                6778889999************************994.6553.....33334555555555557789****************************998733324566789********999*****************************************************998887665544444542567889999999999999999999888777776665 PP

>> TIGR03796  NHLM_micro_ABC1: NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.3   0.0   1.1e-14     8e-13     492     661 ..      53     227 ..      46     267 .. 0.79

  Alignments for each domain:
  == domain 1    score: 45.3 bits;  conditional E-value: 1.1e-14
  TIGR03796 492 apliedfslslkpGqrvAlvGgsGsGkstiaklvaGlyepw....sGeilfDgkpreeiprevlanslalvdqdivlfegtvrdnltlwdetipeedlvrAakDAaihdvilarpgg..yeael.aegganlsGGqrqRleiARaLvknPsiLilDEatsaLDaetEkaidenlrrR 661
                + +++++s  ++pG+ +Al+G+sGsGk  +  ++aG   p     +G++l       ++++   + +  + + d++l + tv++ + +  +    ++l +  +   +++++++++ +   ++ + +e  + +sGG+r+R  +   Lv++P iL lDE ts LDa+   ++   lr+ 
  MMETSP1137-20121227|465_1  53 KLVLNGVSGAIEPGETLALMGPSGSGKTSLLCVLAGRLPPKgrleEGSLLTL--GGVQLTKPFYRRCGFVFQDDLLLAALTVKETIEFAAKLRLPQSLGDEERTRRVEQTLTQLQLNdcADTAIgSEKQRGVSGGERKRCAVGVELVSRPPILFLDEPTSGLDAASALSLALSLRKY 227
                5578899999**************************8866422113444332..33567777777777777778999999*******99998888999999999999999988764411555654588899***********************************99999999985 PP

>> TIGR02770  nickel_nikD: nickel import ATP-binding protein NikD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.0   0.0   1.2e-14   8.4e-13       4     208 ..      58     265 ..      55     276 .. 0.80

  Alignments for each domain:
  == domain 1    score: 46.0 bits;  conditional E-value: 1.2e-14
  TIGR02770   4 dvnlslkrgkvlalvGesGsGksltalailglldkeltktsGei.lldgkelaalalrgreialilqnPr..safnPlltikeqlletlkalekls.kqakelivealeavgLeeaee..vlkkypfelsGGmlqRvmialallleaplliaDePttdlDvvvqaevLklleelrekrglgillithDl.gvvaeladevavmekGkiverg 208
                +v+  +  g+ lal+G sGsGk+     + g l+++ +  +G++ +l g +l++ ++r  ++++++q+     a++   ti+  +   l+  ++l  ++ + ++ ++l++ +L++ +   + ++    +sGG  +R  + + l++++p+l+ DePt+ lD+++++ +   l++  +++++ +l   h   + +  l d +++++kG  v  g
  MMETSP1137-20121227|465_1  58 GVSGAIEPGETLALMGPSGSGKTSLLCVLAGRLPPKGRLEEGSLlTLGGVQLTKPFYR--RCGFVFQDDLllAALTVKETIE--FAAKLRLPQSLGdEERTRRVEQTLTQLQLNDCADtaIGSEKQRGVSGGERKRCAVGVELVSRPPILFLDEPTSGLDAASALSLALSLRKYAKDNEMIVLSSVHQPrSNIFSLFDRLLLLSKGSTVYYG 265
                67778899**************988888999999999999999626788899988887..5799***975214454444444..44556777777756666789999*******98652256777888***********************************************9999999987786415678888888888888777655 PP

>> TIGR01257  rim_protein: rim ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.5   0.0   1.5e-14   1.1e-12     959    1138 ..      69     261 ..      62     270 .. 0.78

  Alignments for each domain:
  == domain 1    score: 43.5 bits;  conditional E-value: 1.5e-14
  TIGR01257  959 taflghngagktttlsiltgllppt....sgtvl.vggkdietnldavrqslgmcpqhnilfhhltvaehilfyaqlk...grsweeaqlemeam.....ledtglhhkrneeaqdlsgglqrklsvaiafvgdakvvvldeptsgvdpysrrsiwdlllkyrs.grtiimsthhmdeadl..lgdriaiisqgrl 1138
                  a++g  g+gkt+ l +l+g lpp      g++l +gg ++        +  g++ q ++l+  ltv e i f a+l+       ee    +e       l+d        e+ + +sgg +++ +v + +v    ++ ldeptsg+d  s  s+   l ky      i++s+ h   +++  l dr+ ++s+g  
  MMETSP1137-20121227|465_1   69 LALMGPSGSGKTSLLCVLAGRLPPKgrleEGSLLtLGGVQLTK---PFYRRCGFVFQDDLLLAALTVKETIEFAAKLRlpqSLGDEERTRRVEQTltqlqLNDCADTAIGSEKQRGVSGGERKRCAVGVELVSRPPILFLDEPTSGLDAASALSLALSLRKYAKdNEMIVLSSVHQPRSNIfsLFDRLLLLSKGST 261 
                 5899********************7333246665246655543...345568************************98422223456555666550111155666666678999******************************************99****761567889999999999844569***9999964 PP

>> TIGR02323  CP_lyasePhnK: phosphonate C-P lyase system protein PhnK
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.3   0.0   1.8e-13   1.3e-11      21     220 ..      59     265 ..      44     275 .. 0.71

  Alignments for each domain:
  == domain 1    score: 42.3 bits;  conditional E-value: 1.8e-13
  TIGR02323  21 vsf.lypGevlgivGesGsGkstllkalaarlladaGevtyesrsrelellalseaerrlllrtewGlvhqnprGl.rmevsaGanigerll...avgarhy.Gkiraaakwlekveidaari...kpaafsGGmqqrlqiarnlvtrprlvfm.eptGGlvsvqarll..llrglvrelglaviivth..lavarllaqrllvmkqGrvvesG 220
                vs  + pGe l+++G sGsGk++ll  la+rl ++ G ++      e  ll+l   +  +      G+v q+   l  ++v    + + +l     +g      ++ ++ + l+  +   + i   k +  sGG ++r  +  +lv+rp ++f+ ept Gl +  a  l   lr+  ++ ++ v+   h   + +  l +rll++ +G  v  G
  MMETSP1137-20121227|465_1  59 VSGaIEPGETLALMGPSGSGKTSLLCVLAGRLPPK-GRLE------EGSLLTLGGVQLTKPFYRRCGFVFQDDLLLaALTVKETIEFAAKLRlpqSLGDEERtRRVEQTLTQLQLNDCADTAIgseKQRGVSGGERKRCAVGVELVSRPPILFLdEPTSGLDAASALSLalSLRKYAKDNEMIVLSSVHqpRSNIFSLFDRLLLLSKGSTVYYG 265
                454489*************************9885.5443......33455665555444443446*****99855145676666666655311134443320233333345555555555567778999************************9******555554433279***********9999954455556779********998766 PP

>> TIGR01288  nodI: nodulation ABC transporter NodI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.6   0.0   2.7e-14     2e-12      11     217 ..      47     265 ..      39     278 .. 0.76

  Alignments for each domain:
  == domain 1    score: 44.6 bits;  conditional E-value: 2.7e-14
  TIGR01288  11 sksygdkvvvndlsftiaagecfgllgpngagkstiarlvlglisp....degkitvlgepvpararlarakigvvpqfdnldreftvrenllvfgryfgl....streieevipsllefarleskadvrvad.....lsggmkrrltlaralindpqllildepttgldpharhliwerlrsllargktilltthlmeeae..rlcdrlcvleagrkiaeg 217
                + s   k+v+n +s +i  ge + l+gp g+gk+++  ++ g  +p    +eg +  lg  + ++      + g v q d l   +tv+e +      ++l       e    + + l   +l+  ad+ + +     +sgg ++r ++   l+  p +l ldept+gld  +   +   lr        i+l++     ++   l drl +l +g  +  g
  MMETSP1137-20121227|465_1  47 KESSKRKLVLNGVSGAIEPGETLALMGPSGSGKTSLLCVLAGRLPPkgrlEEGSLLTLGGVQLTKPF--YRRCGFVFQDDLLLAALTVKETIEF-AAKLRLpqslGDEERTRRVEQTLTQLQLNDCADTAIGSekqrgVSGGERKRCAVGVELVSRPPILFLDEPTSGLDAASALSLALSLRKYAKDNEMIVLSSVHQPRSNifSLFDRLLLLSKGSTVYYG 265
                5677889***********************************9999443346777777766655544..4578*****************9754.44444421112233334455555556677777766643223339*******************************9998888999999998888888876554444322789999999999887666 PP

>> TIGR02633  xylG: D-xylose ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.4   0.0   2.7e-08     2e-06      16     137 ..      55     173 ..      46     181 .. 0.81
   2 !   17.9   0.0   2.6e-06   0.00019     403     480 ..     181     260 ..     177     264 .. 0.85

  Alignments for each domain:
  == domain 1    score: 24.4 bits;  conditional E-value: 2.7e-08
  TIGR02633  16 aldnidlklraGeivslcGenGaGkstlmkvlsg.vyphGtydGeilfegeelkassirdterkGiviihqeltlvkelsvleniflGneitlkGglmdydamvlrakellrelkldasnvtr 137
                 l++++  +++Ge ++l G  G+Gk++l+ vl+g + p+G  +   l     l   ++ +   +    + q+  l+  l+v e i +  ++ l+   + +++ ++r+++ l +l+l++  +t 
  MMETSP1137-20121227|465_1  55 VLNGVSGAIEPGETLALMGPSGSGKTSLLCVLAGrLPPKGRLEEGSLLT---LGGVQLTKPFYRRCGFVFQDDLLLAALTVKETIEFAAKLRLPQ-SLGDEERTRRVEQTLTQLQLNDCADTA 173
                5899999**************************9345788876433332...222233333445566788999999******************9.7889999**************999886 PP

  == domain 2    score: 17.9 bits;  conditional E-value: 2.6e-06
  TIGR02633 403 rlsGGnqqkavlakllllnprvlildeptrGvdvGakyeiyklinqlaqeGvaiivvsse..laevlGlsdrvlvigeGk 480
                ++sGG++++  +   l+ +p +l ldept G+d  +   +   + + a++   i++ s     ++++ l dr+l++ +G 
  MMETSP1137-20121227|465_1 181 GVSGGERKRCAVGVELVSRPPILFLDEPTSGLDAASALSLALSLRKYAKDNEMIVLSSVHqpRSNIFSLFDRLLLLSKGS 260
                589*******************************999999999999998876666555441146899*******999985 PP

>> TIGR03719  ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.0   0.0   0.00016     0.012     333     390 ..      51     107 ..      40     121 .. 0.80
   2 !   30.3   0.0     5e-10   3.6e-08     157     208 ..     177     228 ..     132     264 .. 0.81

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 0.00016
  TIGR03719 333 gdklliddlsfklpkggivGviGpnGaGkstlfklitgkekpdsGelkiGetvklayv 390
                + kl+++ +s  + +g  + ++Gp G+Gk+ l+ +++g+  p +G+l+ G+ ++l+ v
  MMETSP1137-20121227|465_1  51 KRKLVLNGVSGAIEPGETLALMGPSGSGKTSLLCVLAGRL-PPKGRLEEGSLLTLGGV 107
                5678889999999999999999999999999999999875.55788888887777666 PP

  == domain 2    score: 30.3 bits;  conditional E-value: 5e-10
  TIGR03719 157 akveklsGGekrrvalcrlllekPdlllldePtnhldaesvaWlekflkeyk 208
                 k   +sGGe++r a+   l+++P +l+ldePt  lda s   l   l++y+
  MMETSP1137-20121227|465_1 177 EKQRGVSGGERKRCAVGVELVSRPPILFLDEPTSGLDAASALSLALSLRKYA 228
                334569***********************************99999999996 PP

>> TIGR01192  chvA: glucan exporter ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.2   0.0   2.4e-13   1.8e-11     352     508 ..      57     218 ..      46     267 .. 0.76

  Alignments for each domain:
  == domain 1    score: 41.2 bits;  conditional E-value: 2.4e-13
  TIGR01192 352 rdvsfeakagqtvaivgptgagkttlinllqrvydpk....sgqil.idgvdiatvtreslrksiatvfqdaglln.rsirenirlgredatdeevveaakaaaasdfiek.rlkg.ydtlvg.ergnrlsggerqrlaiarailknapilvldeatsaldvetea 508
                  vs  +  g+t+a++gp+g+gkt+l+ +l     pk    +g +l + gv    +t+   r+    vfqd  ll   +++e i++  +    + + +  ++   ++ + + +l++  dt +g e+   +sgger+r a+   ++   pil lde ts ld  +  
  MMETSP1137-20121227|465_1  57 NGVSGAIEPGETLALMGPSGSGKTSLLCVLAGRLPPKgrleEGSLLtLGGV---QLTKPFYRR-CGFVFQDDLLLAaLTVKETIEFAAKLRLPQSLGDEERTRRVEQTLTQlQLNDcADTAIGsEKQRGVSGGERKRCAVGVELVSRPPILFLDEPTSGLDAASAL 218
                458888999*******************99987777522112333213333...345665555.689***999886269*******99988888888887777766655441555426999994566669*******************************87665 PP

>> TIGR01193  bacteriocin_ABC: ABC-type bacteriocin transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.8   0.0   2.7e-09     2e-07     489     691 ..      55     266 ..      50     273 .. 0.72

  Alignments for each domain:
  == domain 1    score: 27.8 bits;  conditional E-value: 2.7e-09
  TIGR01193 489 vledislkikknekitlvGlsGsGkstlakllvkff....qaesGe.illngkslkdidkhelrqlinylPqePfifsG.silenlllgakenvsqeeikkaveiaeikddieklpl..Gyqtel.seeassisgGqkqrlalarallsdskvlildestsnldlltekkivenllkl.kdktiifva..h..rlsvakksdkiivldeGkiieqGs 691
                vl+ +s  i+  e+++l+G sGsGk++l  +l +        e+G  ++l+g++   + k   r+   ++ q+ ++++  ++ e + + ak ++ q ++ +  +   +++ + +l+l    +t + se++  +sgG ++r a+   l+s   +l lde ts ld      +   l k  kd  +i ++  h  r ++ +  d+++ l++G  +  Gs
  MMETSP1137-20121227|465_1  55 VLNGVSGAIEPGETLALMGPSGSGKTSLLCVLAGRLppkgRLEEGSlLTLGGVQ---LTKPFYRR-CGFVFQDDLLLAAlTVKETIEFAAKLRLPQ-SLGDEERTRRVEQTLTQLQLndCADTAIgSEKQRGVSGGERKRCAVGVELVSRPPILFLDEPTSGLDAASALSLALSLRKYaKDNEMIVLSsvHqpRSNIFSLFDRLLLLSKGSTVYYGS 266
                78999999*************************998332222233313444444...45555555.689999998887636777777777777765.56666667777777777665226899994456778********************************98877776666554245555554322445677888888888888887777666 PP

>> TIGR00954  3a01203: peroxysomal long chain fatty acyl transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.0   7.8e-07   5.7e-05     468     614 ..      55     212 ..      49     254 .. 0.84

  Alignments for each domain:
  == domain 1    score: 19.5 bits;  conditional E-value: 7.8e-07
  TIGR00954 468 lieeLsfevksGnhlLiiGPnGcGKsslfRilgelWPvyg............glltkpeegklFyvPqrPYmslg.tlRdqiiYPdssedfker..glsdkdLeqiLeevkLedllereggwdavqdWkdvLsgGekqRiamARlfyHkPkfavLDEctsAv 614
                +++ +s  ++ G+ l ++GP G GK sl  +l++  P  g             +ltkp   +  +v q   +    t+++ i +  +    ++   + + + +eq L +++L+d  +  +g +     +  +sgGe++R a+   +  +P    LDE ts +
  MMETSP1137-20121227|465_1  55 VLNGVSGAIEPGETLALMGPSGSGKTSLLCVLAGRLPPKGrleegslltlggVQLTKPFYRRCGFVFQDDLLLAAlTVKETIEFAAKLRLPQSLgdEERTRRVEQTLTQLQLNDCADTAIGSEK----QRGVSGGERKRCAVGVELVSRPPILFLDEPTSGL 212
                56677788999***********************9999999*********97789**************9998888******999887655555224566789************999999776....5579**************************9854 PP

>> TIGR01271  CFTR_protein: cystic fibrosis transmembrane conductor regulator (CFTR)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   4.7e-06   0.00035     441     631 ..      55     267 ..      46     272 .. 0.61

  Alignments for each domain:
  == domain 1    score: 15.9 bits;  conditional E-value: 4.7e-06
  TIGR01271 441 vlknislklekgqllavagstgsgkssllmmilgeleps....egkikhsg..........risfspqvswimpg.tikdniifglsydeyr.ytsvikacqleediallaekd...ktvlgeggitlsggqrarislaravykdadlylldspfsyldvvtekeifesclckllanktrilvts....klehlkkadkilllhegscyfygtf 631
                vl  +s  +e g+ la+ g +gsgk+sll ++ g l p     eg +   g          r  f  q   ++   t+k+ i f       +      ++ ++e+ +++l   d     + +e    +sgg+r r ++   +     + +ld p s ld  +   +    l k   +   i+++s    + + +   d++lll +gs+ +yg+ 
  MMETSP1137-20121227|465_1  55 VLNGVSGAIEPGETLALMGPSGSGKTSLLCVLAGRLPPKgrleEGSLLTLGgvqltkpfyrRCGFVFQDDLLLAAlTVKETIEFAAKLRLPQsLGDEERTRRVEQTLTQLQLNDcadTAIGSEKQRGVSGGERKRCAVGVELVSRPPILFLDEPTSGLDAASALSLA-LSLRKYAKDNEMIVLSSvhqpRSNIFSLFDRLLLLSKGSTVYYGSV 267
                88999999***************************988433335655555511111122223344444444443225666666654432211012223444556666665544311033344566678888888888888888888888888888888887776654.4566776666666665521112233455688888888888888876 PP

>> TIGR00957  MRP_assoc_pro: multi drug resistance-associated protein (MRP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.2   0.0   6.1e-05    0.0045     653     795 ..      55     216 ..      46     221 .. 0.74

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 6.1e-05
  TIGR00957 653 tlngltlsipegalvavvgqvgcgkssllsallaem...dkv.egkvalkgsv..........ayvpqqaw.iqndslrenilfgkaleekyy....kavleacalladleilpsgdrteigekgvnlsggqkqrvslaravysdadiyllddplsavdahv 795
                 lng++  i  g  +a++g+ g gk+sll  l + +    ++ eg +   g v           +v q+   +   +++e i f  +l+ ++     + + +    l++l++  + d +   ek   +sgg+++r ++   + s   i +ld+p s +da  
  MMETSP1137-20121227|465_1  55 VLNGVSGAIEPGETLALMGPSGSGKTSLLCVLAGRLppkGRLeEGSLLTLGGVqltkpfyrrcGFVFQDDLlLAALTVKETIEFAAKLRLPQSlgdeERTRRVEQTLTQLQLNDCADTAIGSEKQRGVSGGERKRCAVGVELVSRPPILFLDEPTSGLDAAS 216
                68999999999*******************998887322355256665555552222211111466666541456789*******99975543122144555667799999988888776679***********************************9965 PP

>> TIGR00368  TIGR00368: Mg chelatase-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   0.0    0.0012     0.085     206     239 ..      61      94 ..       5     111 .. 0.75

  Alignments for each domain:
  == domain 1    score: 9.2 bits;  conditional E-value: 0.0012
  TIGR00368 206 iaaaGghnllllGPPGsGktllakrlqgllPelt 239
                 a+  g  l l+GP GsGkt l   l g lP+  
  MMETSP1137-20121227|465_1  61 GAIEPGETLALMGPSGSGKTSLLCVLAGRLPPKG 94 
                36667899***********************854 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (643 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       268  (0.065334); expected 82.0 (0.02)
Passed bias filter:                      192  (0.0468064); expected 82.0 (0.02)
Passed Vit filter:                       100  (0.0243784); expected 4.1 (0.001)
Passed Fwd filter:                        56  (0.0136519); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              56  [number of targets reported over threshold]
# CPU time: 1.41u 0.20s 00:00:01.61 Elapsed: 00:00:01.18
# Mc/sec: 719.23
//
Query:       MMETSP1137-20121227|466_1  [L=227]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (227 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        29  (0.00706972); expected 82.0 (0.02)
Passed bias filter:                       29  (0.00706972); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.14s 00:00:00.33 Elapsed: 00:00:00.33
# Mc/sec: 907.93
//
Query:       MMETSP1137-20121227|467_1  [L=89]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (89 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        39  (0.00950756); expected 82.0 (0.02)
Passed bias filter:                       34  (0.00828864); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.28
# Mc/sec: 405.07
//
Query:       MMETSP1137-20121227|468_1  [L=591]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (591 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       100  (0.0243784); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.18s 00:00:00.58 Elapsed: 00:00:00.78
# Mc/sec: 1000.07
//
Query:       MMETSP1137-20121227|469_1  [L=473]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.1e-05   21.2   0.0    4.6e-05   20.6   0.0    1.2  1  TIGR00417 speE: spermidine synthase


Domain annotation for each model (and alignments):
>> TIGR00417  speE: spermidine synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   0.0   1.1e-08   4.6e-05      98     188 ..     294     384 ..     269     416 .. 0.81

  Alignments for each domain:
  == domain 1    score: 20.6 bits;  conditional E-value: 1.1e-08
  TIGR00417  98 eitlveiDekvielskkylpklsgalddervdlkidDGvkflrdt....ekkfDviivDstdPvG.paetlfekefyelvkkalnedGvivaqses 188
                +it v+iD++v+e+s   l      ++ +rv ++  D ++++  t    +  fD i vD  d      e+++ + f + ++k l  dGv+++  ++
  MMETSP1137-20121227|469_1 294 SITAVDIDSAVVEASTMCLG-----VSVDRVRIVTADALEWVYTTaqgqKPSFDFIFVDIFDGSNeTPEAFYGRPFLDALRKLLAADGVVIQNLHT 384
                6899***********87775.....56789************9886665668********997651569999******************987554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (473 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       114  (0.0277913); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.15s 00:00:00.49 Elapsed: 00:00:00.70
# Mc/sec: 891.87
//
Query:       MMETSP1137-20121227|470_1  [L=323]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (323 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        51  (0.012433); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.12s 00:00:00.37 Elapsed: 00:00:01.19
# Mc/sec: 358.26
//
Query:       MMETSP1137-20121227|471_1  [L=379]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      4e-06   24.0   0.0    6.2e-06   23.4   0.0    1.2  1  TIGR01121 D_amino_aminoT: D-amino-acid transaminase
    0.00013   19.1   0.1      0.017   12.2   0.0    2.2  2  TIGR03461 pabC_Proteo: aminodeoxychorismate lyase
    0.00033   17.7   0.0     0.0007   16.7   0.0    1.4  1  TIGR01122 ilvE_I: branched-chain amino acid aminotransferase


Domain annotation for each model (and alignments):
>> TIGR01121  D_amino_aminoT: D-amino-acid transaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.4   0.0   4.6e-09   6.2e-06     161     220 ..     220     280 ..     208     311 .. 0.82

  Alignments for each domain:
  == domain 1    score: 23.4 bits;  conditional E-value: 4.6e-09
  TIGR01121 161 kgafeailhrdelvtegsssnvyaik..dgvlythpannlilnGitrkvilklaeenglpvk 220
                  +  a+l  ++ vteg ssn+  ++  dg++ t p + l+l G  r+v+l++++e+++pv 
  MMETSP1137-20121227|471_1 220 DVCETAMLDEHGGVTEGVSSNIAFLRrsDGAIVTAP-DSLVLSGTIRRVLLEVCAEENVPVV 280
                346668999999**********88754499***988.89********************974 PP

>> TIGR03461  pabC_Proteo: aminodeoxychorismate lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.7   0.0    0.0023       3.2      22      50 ..      83     113 ..      66     135 .. 0.77
   2 !   12.2   0.0   1.2e-05     0.017     152     215 ..     216     280 ..     212     288 .. 0.80

  Alignments for each domain:
  == domain 1    score: 4.7 bits;  conditional E-value: 0.0023
  TIGR03461  22 GlFtTakvk..dgkvelleaHleRLqkaaer 50 
                Gl+tTa+++  + +v ll+ H  RLq + + 
  MMETSP1137-20121227|471_1  83 GLYTTARTVcaQSRVLLLNDHALRLQLSRDA 113
                99****9753378899*********976543 PP

  == domain 2    score: 12.2 bits;  conditional E-value: 1.2e-05
  TIGR03461 152 lekseadealvldtegkvvEataaNl.fwvkenkvfTpsLsesGvaGvmrqlvlellkkleveie 215
                ++++++ e+ +ld +g v E++++N+ f+++ +  +  + +   ++G +r+ +le++++++v++ 
  MMETSP1137-20121227|471_1 216 VHEKDVCETAMLDEHGGVTEGVSSNIaFLRRSDGAIVTAPDSLVLSGTIRRVLLEVCAEENVPVV 280
                56788999*****************966666555444455666789999********99999875 PP

>> TIGR01122  ilvE_I: branched-chain amino acid aminotransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0   5.1e-07    0.0007     170     229 ..     220     280 ..     210     287 .. 0.87

  Alignments for each domain:
  == domain 1    score: 16.7 bits;  conditional E-value: 5.1e-07
  TIGR01122 170 GydeailLdeeGyvaeGsGenifivk..dgvlltPpvsesiLkgitrdaviklakelgievk 229
                 + e+ +Lde+G v+eG   ni  ++  dg+++t p  + +L+g  r +++++ +e+ + v+
  MMETSP1137-20121227|471_1 220 DVCETAMLDEHGGVTEGVSSNIAFLRrsDGAIVTAPD-SLVLSGTIRRVLLEVCAEENVPVV 280
                567999***************976644589****999.88***************9998875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (379 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        91  (0.0221843); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.29u 0.14s 00:00:00.43 Elapsed: 00:00:00.66
# Mc/sec: 757.94
//
Query:       MMETSP1137-20121227|473_1  [L=182]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (182 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        39  (0.00950756); expected 82.0 (0.02)
Passed bias filter:                       37  (0.00901999); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.15s 00:00:00.34 Elapsed: 00:00:00.25
# Mc/sec: 960.88
//
Query:       MMETSP1137-20121227|474_1  [L=316]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (316 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        59  (0.0143832); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.14s 00:00:00.38 Elapsed: 00:00:00.50
# Mc/sec: 834.17
//
Query:       MMETSP1137-20121227|475_1  [L=400]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (400 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        48  (0.0117016); expected 82.0 (0.02)
Passed bias filter:                       40  (0.00975134); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.17s 00:00:00.47 Elapsed: 00:00:00.46
# Mc/sec: 1147.73
//
Query:       MMETSP1137-20121227|476_1  [L=426]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.5e-72  242.4   0.0    2.7e-51  172.6   0.0    2.1  2  TIGR00260 thrC: threonine synthase


Domain annotation for each model (and alignments):
>> TIGR00260  thrC: threonine synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  172.6   0.0   6.6e-55   2.7e-51       5     160 ..      95     261 ..      93     265 .. 0.93
   2 !   67.9   0.0   4.5e-23   1.8e-19     184     261 ..     266     341 ..     262     372 .. 0.90

  Alignments for each domain:
  == domain 1    score: 172.6 bits;  conditional E-value: 6.6e-55
  TIGR00260   5 reilevt...ekdlvdlaegstelfrspkla..eevgaenlyvkelfhgPtlaFKDrglqfvavlltkalelgne...tvlcAtsGdtgaaaaealagkanvkvvvLyPkgkispv.keklvtalaenakvlaikGdFDdaqdlvkeifedke...klklnsvNsinp 160
                r++l++     +dl d++++s+++f  ++++  e++    l+v+el+hgPt+aFKD++lqf+++l++++l++ n    tv++AtsGdtg++a+++l+gk++v+++++yP+g++sp+ + +++t+l+ n++ +ai GdFDd+q++vke+f+d +   ++ l +vNsin+
  MMETSP1137-20121227|476_1  95 RKFLSEEdvpTADLRDIIKRSYATFGDKRVTpvEPLXD-GLHVLELYHGPTFAFKDVALQFLGNLFEYLLQQRNGmtlTVVGATSGDTGSSAIQGLRGKKGVECFIMYPDGRTSPIqERQMITVLDANIHNIAIGGDFDDCQRIVKELFGDAPfreAHSLAAVNSINW 261
                566666655689999***********999987788888.*********************************999999**************************************999*******************************777777***********9 PP

  == domain 2    score: 67.9 bits;  conditional E-value: 4.5e-23
  TIGR00260 184 kvvvpvpsgnfgailkGflekkelglpieklaiaaegaadivrrflksgdlepkedkeTlstAmdignpsnveralel 261
                kv ++vp gnfg+il+G+++k+++ lp++ l +a++++ di++rf  +gd +  +  +Tls++mdi ++sn+er l+ 
  MMETSP1137-20121227|476_1 266 KVSFSVPTGNFGDILAGWYAKEMG-LPVDQLVVATNEN-DILHRFWTKGDYSRSSVRQTLSPSMDIQISSNFERFLFH 341
                899******************999.************9.**********77777777*****************9873 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (426 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        87  (0.0212092); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.16s 00:00:00.49 Elapsed: 00:00:00.38
# Mc/sec: 1479.67
//
Query:       MMETSP1137-20121227|477_1  [L=239]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (239 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        83  (0.020234); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.17s 00:00:00.38 Elapsed: 00:00:00.24
# Mc/sec: 1314.39
//
Query:       MMETSP1137-20121227|478_1  [L=305]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0017   15.3   0.1      0.072    9.9   0.0    2.1  2  TIGR03212 uraD_N-term-dom: putative urate catabolism protein


Domain annotation for each model (and alignments):
>> TIGR03212  uraD_N-term-dom: putative urate catabolism protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    3.2   0.0     0.002       8.3     150     187 ..      93     131 ..      85     143 .. 0.82
   2 !    9.9   0.0   1.7e-05     0.072     150     189 ..     195     235 ..     189     252 .. 0.87

  Alignments for each domain:
  == domain 1    score: 3.2 bits;  conditional E-value: 0.002
  TIGR03212 150 evtGerplGwytGrtspntarlvveegGfvyda.dsyad 187
                 ++ +  lG yt ++ ++t+r++v eg  +++  ds +d
  MMETSP1137-20121227|478_1  93 AIVASMALGDYTLQQHTYTHRVIVGEGNHTFVIeDSESD 131
                57778899*******************999875255555 PP

  == domain 2    score: 9.9 bits;  conditional E-value: 1.7e-05
  TIGR03212 150 evtGerplGwytGrtspntarlvveegGfvy.dadsyaddl 189
                e++ + p G yt r+ ++t++l ++ g ++    d+y d l
  MMETSP1137-20121227|478_1 195 EIVESLPAGTYTERANTYTHELQLQSGTYALvMLDTYRDGL 235
                788899**********************9862579**9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (305 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        68  (0.0165773); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.18u 0.20s 00:00:00.38 Elapsed: 00:00:00.34
# Mc/sec: 1184.02
//
Query:       MMETSP1137-20121227|479_1  [L=145]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0039   13.8   0.1     0.0047   13.5   0.1    1.1  1  TIGR01512 ATPase-IB2_Cd: cadmium-translocating P-type ATPase


Domain annotation for each model (and alignments):
>> TIGR01512  ATPase-IB2_Cd: cadmium-translocating P-type ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   0.1   1.1e-06    0.0047     401     467 ..      27      92 ..      23     108 .. 0.89

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 1.1e-06
  TIGR01512 401 aAdvgiamGasgsdvaletADvvllkddlsrlpeaiklarktrrivkqnvvlaltiilvlillallg 467
                aA+ ++ m  s  d a + A vv++++d+++l+ a +  r  +++v+  v+l++ + +v+++ +l  
  MMETSP1137-20121227|479_1  27 AATCALLMS-SDRDKAPKPAYVVVIESDIQKLQSARRNVRAETKKVVIGVTLSILLYFVFLIPNLWS 92 
                677788888.88999999*******************************************999865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (145 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       177  (0.0431497); expected 82.0 (0.02)
Passed bias filter:                      148  (0.03608); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.19u 0.19s 00:00:00.38 Elapsed: 00:00:00.27
# Mc/sec: 708.83
//
Query:       MMETSP1137-20121227|481_1  [L=242]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.6e-15   54.5   0.0      3e-15   54.3   0.0    1.1  1  TIGR02349 DnaJ_bact: chaperone protein DnaJ
    9.8e-11   38.6   0.0    1.4e-10   38.1   0.0    1.1  1  TIGR03835 termin_org_DnaJ: terminal organelle assembly protein TopJ
    0.00044   18.2   0.5    0.00084   17.3   0.3    1.4  1  TIGR00714 hscB: Fe-S protein assembly co-chaperone HscB


Domain annotation for each model (and alignments):
>> TIGR02349  DnaJ_bact: chaperone protein DnaJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.3   0.0   2.2e-18     3e-15       3      72 ..      32     101 ..      31     171 .. 0.80

  Alignments for each domain:
  == domain 1    score: 54.3 bits;  conditional E-value: 2.2e-18
  TIGR02349   3 YeiLgvskdAseeeikkAYrklakkyHPDrnkgekeaeekfkeineAyevLsdeekraq.YDqfghagleg 72 
                Y++Lgvs+ A+ ++i++ Y +lak+yHPD+++ ++ +e+ f +++ Ay  Lsd+e r +  D+ + a++  
  MMETSP1137-20121227|481_1  32 YSVLGVSRGATPQDIRSKYISLAKQYHPDTQQ-STSCEKTFAKVHAAYLSLSDPEERTKlMDRQADAHALM 101
                9*******************************.99*******************99965267765554443 PP

>> TIGR03835  termin_org_DnaJ: terminal organelle assembly protein TopJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.1   0.0     1e-13   1.4e-10       5      62 ..      32      89 ..      31      95 .. 0.96

  Alignments for each domain:
  == domain 1    score: 38.1 bits;  conditional E-value: 1e-13
  TIGR03835  5 yevLgidrDadeqeikkafrkLakkyhPDrnkaadaakifaeineandvLsnPkkrar 62
               y vLg++r a  q+i+  +  Lak+yhPD+ + +  +k fa +  a+  Ls+P+ r +
  MMETSP1137-20121227|481_1 32 YSVLGVSRGATPQDIRSKYISLAKQYHPDTQQSTSCEKTFAKVHAAYLSLSDPEERTK 89
               99****************************************************9976 PP

>> TIGR00714  hscB: Fe-S protein assembly co-chaperone HscB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.3   6.1e-07   0.00084       7      57 ..      45      91 ..      42      96 .. 0.85

  Alignments for each domain:
  == domain 1    score: 17.3 bits;  conditional E-value: 6.1e-07
  TIGR00714  7 aLrkryrklQkqyHPDvsksaqeqaaalqqStelNqAykTLkdplkRaeyl 57
                +r +y  l kqyHPD   + q+ +   ++ +++  Ay  L dp  R++ +
  MMETSP1137-20121227|481_1 45 DIRSKYISLAKQYHPD---T-QQSTSCEKTFAKVHAAYLSLSDPEERTKLM 91
               67899***********...3.34466778899************9998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (242 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       123  (0.0299854); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.21u 0.17s 00:00:00.38 Elapsed: 00:00:00.37
# Mc/sec: 863.28
//
Query:       MMETSP1137-20121227|482_1  [L=526]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (526 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        87  (0.0212092); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.13s 00:00:00.48 Elapsed: 00:00:00.47
# Mc/sec: 1477.15
//
Query:       MMETSP1137-20121227|484_1  [L=147]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (147 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        52  (0.0126767); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.15s 00:00:00.31 Elapsed: 00:00:00.26
# Mc/sec: 746.25
//
Query:       MMETSP1137-20121227|485_1  [L=290]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.4e-88  294.0   8.0    3.4e-53  178.7   0.3    2.0  2  TIGR01692 HIBADH: 3-hydroxyisobutyrate dehydrogenase
    8.6e-43  144.4   4.8    3.9e-26   89.8   0.7    2.1  2  TIGR01505 tartro_sem_red: 2-hydroxy-3-oxopropionate reductase
    4.1e-11   40.5   0.1    1.8e-08   31.8   0.0    2.2  2  TIGR00872 gnd_rel: 6-phosphogluconate dehydrogenase (decarboxylating)
    7.1e-06   22.9   0.1      1e-05   22.4   0.1    1.3  1  TIGR00873 gnd: 6-phosphogluconate dehydrogenase (decarboxylating)
    0.00029   17.6   0.0     0.0034   14.0   0.0    2.1  2  TIGR03026 NDP-sugDHase: nucleotide sugar dehydrogenase
    0.00046   17.7   0.1    0.00075   17.0   0.0    1.3  1  TIGR00112 proC: pyrroline-5-carboxylate reductase
     0.0036   14.3   0.1     0.0065   13.4   0.0    1.6  1  TIGR03911 pyrrolys_PylD: pyrrolysine biosynthesis protein PylD
  ------ inclusion threshold ------
      0.019   11.6   0.2       0.03   10.9   0.1    1.2  1  TIGR01327 PGDH: phosphoglycerate dehydrogenase


Domain annotation for each model (and alignments):
>> TIGR01692  HIBADH: 3-hydroxyisobutyrate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  120.5   1.3   3.4e-38   1.8e-35       1     130 [.      10     146 ..      10     147 .. 0.91
   2 !  178.7   0.3   6.6e-56   3.4e-53     152     287 ..     145     280 ..     143     281 .. 0.98

  Alignments for each domain:
  == domain 1    score: 120.5 bits;  conditional E-value: 3.4e-38
  TIGR01692   1 fiGlGnmGgpmaanllkaghavrvfdlsakaveelveaGaqaaasaaeav......eeadvvitmlPagkhvesvy.agdegilakvkkksllidsstidvdsarkvaeeaaakGavfldaPvsGGvggaraGtltf 130
                f+GlGnmG+ maanll++g +v ++d +  a+ +l++aGaq+ +s+a +       +e+ v+i+mlP  ++v++ y ++d+ il+ v+ ++ lid+sti++  ar++a++a+a+G  f+daPvsGGv ga+a t ++
  MMETSP1137-20121227|485_1  10 FVGLGNMGSRMAANLLRKGCRVVAYDTQQGAMGRLRDAGAQTVESPALVSrvlaeqTESGVLISMLPGNAQVRDAYwLADDSILSSVAAGTRLIDCSTIAPAIAREIAAKAEAAGCEFVDAPVSGGVVGAEAATPAV 146
                9********************************************98653222222466799**********998846999***************************************************98665 PP

  == domain 2    score: 178.7 bits;  conditional E-value: 6.6e-56
  TIGR01692 152 nivhaGdaGaGqaakiCnnlllgismiGvaealalgeklGldpkvlaeilskssGrcWsldtynPvPGvveqaPasngykgGfatalmlkdlglaqeaaksvkasvllGalarelyslfaskgagkkdfsavikll 287
                 ++h+Gd+G+Gqaak+ nnl+l++smiGvae + lge+lG+d+kvla i + ss rcWs+dtynP PGv++++Pa ++y+gGfa++lm kdlgla +aa++ ++ +    +a   y   a+ g g+kdfsav++ll
  MMETSP1137-20121227|485_1 145 AVLHCGDVGSGQAAKLSNNLVLAVSMIGVAEGMLLGERLGVDKKVLASIFNSSSARCWSSDTYNPCPGVMDNVPAARDYQGGFAVNLMRKDLGLALDAATASETALRAARMALSTYDEAAATGLGDKDFSAVYRLL 280
                589**********************************************************************************************************************************997 PP

>> TIGR01505  tartro_sem_red: 2-hydroxy-3-oxopropionate reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.8   0.7   7.7e-29   3.9e-26       2     132 ..       8     145 ..       7     147 .. 0.89
   2 !   58.2   0.2   3.2e-19   1.6e-16     153     285 ..     143     282 ..     140     286 .. 0.86

  Alignments for each domain:
  == domain 1    score: 89.8 bits;  conditional E-value: 7.7e-29
  TIGR01505   2 vgfiGlGimGkPmsknllkaGyqlvvatleqealdellaaGaesaetakevve......dadvivtmvPdsPqveeva.lGenGileaakkGkvlvdmssiaPleskelakavkekGidvldaPvsGGeagaiegtls 132
                vgf+GlG mG+ m+ nll+ G ++v+ + +q a+ +l  aGa+++e+ + v++      ++ v++ m+P   qv++   l ++ il +   G+ l+d s+iaP  ++e+a ++++ G +++daPvsGG +ga  +t +
  MMETSP1137-20121227|485_1   8 VGFVGLGNMGSRMAANLLRKGCRVVAYDTQQGAMGRLRDAGAQTVESPALVSRvlaeqtESGVLISMLPGNAQVRDAYwLADDSILSSVAAGTRLIDCSTIAPAIAREIAAKAEAAGCEFVDAPVSGGVVGAEAATPA 145
                8*********************************************9665543222222578************876527999*************************************************998865 PP

  == domain 2    score: 58.2 bits;  conditional E-value: 3.2e-19
  TIGR01505 153 gksivlvGenGaGqtvkvanqvivalnieavsealvlaekaGvdpkavlqalrGGlagstvleakk..erlld.....rdfkPGfridlhqkdlalaldaakavgaalPvtavvaellaalradGdgtldhsalvralek 285
                + ++ ++G+ G+Gq++k++n +++a+ +  v+e ++l e+ Gvd k    +++   a     ++ +  + ++d     rd++ Gf ++l +kdl+laldaa a   al  + +     +  +a G g+ d sa+ r le 
  MMETSP1137-20121227|485_1 143 TPAVLHCGDVGSGQAAKLSNNLVLAVSMIGVAEGMLLGERLGVDKKVLASIFNSSSARCWSSDTYNpcPGVMDnvpaaRDYQGGFAVNLMRKDLGLALDAATASETALRAARMALSTYDEAAATGLGDKDFSAVYRLLEE 282
                56799******************************************9999999988654444433113344333333********************************9999********************999985 PP

>> TIGR00872  gnd_rel: 6-phosphogluconate dehydrogenase (decarboxylating)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.8   0.0   3.5e-11   1.8e-08       1     128 [.       6     141 ..       6     146 .. 0.76
   2 !    7.0   0.0    0.0012      0.64     158     210 ..     146     196 ..     140     207 .. 0.78

  Alignments for each domain:
  == domain 1    score: 31.8 bits;  conditional E-value: 3.5e-11
  TIGR00872   1 mklgliGlGrmGaniakrlakrghevvgydrdqdaveelkedraegvanlkellkrl...saprvvwvmvpag..ivdav.l..eelapllekGdividgGnsyykdslrrekelkekgihlldvGtsGGvlGker 128
                m +g++GlG mG+ +a +l  +g  vv+yd++q a+ +l++ +a+ v +   +++ l   +   v+  m+p    + da  l  + + + + +G  +id+             +   +g +++d+ +sGGv+G+e 
  MMETSP1137-20121227|485_1   6 MTVGFVGLGNMGSRMAANLLRKGCRVVAYDTQQGAMGRLRDAGAQTVESPALVSRVLaeqTESGVLISMLPGNaqVRDAYwLadDSILSSVAAGTRLIDCSTIAPAIAREIAAKAEAAGCEFVDAPVSGGVVGAEA 141
                789************************************999888887765555555111345688889997654566652322335566789******9765544444445667789***************986 PP

  == domain 2    score: 7.0 bits;  conditional E-value: 0.0012
  TIGR00872 158 ylylGeaGsGhfvkmvhnGieyGlmaalaeGlevlknsqfdfdleevarvyrr 210
                 l++G+ GsG  +k+  n +    m  +aeG+ + +  +   d + +a +++ 
  MMETSP1137-20121227|485_1 146 VLHCGDVGSGQAAKLSNNLVLAVSMIGVAEGMLLGE--RLGVDKKVLASIFNS 196
                69******************9999*******86554..445555666666665 PP

>> TIGR00873  gnd: 6-phosphogluconate dehydrogenase (decarboxylating)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.4   0.1     2e-08     1e-05       2     143 ..       8     152 ..       7     181 .. 0.77

  Alignments for each domain:
  == domain 1    score: 22.4 bits;  conditional E-value: 2e-08
  TIGR00873   2 iGliGlavmGknlvlniadkGfsvavynrtkektdellkeeakgkklvgaesieefvkslekPrkilllvkaGaav.davi...eellpllekgdiiidGGnslykdterrekelkekgilfvGvGvsGGeeGark.GPslmpGGsk 143
                +G++Gl+ mG+ ++ n+ +kG  v++y+ ++  + +l  + a  +++++   +  ++++  +   ++ ++   a v da     +++l  +  g  +id        +     + +++g +fv + vsGG  Ga    P+++  G+ 
  MMETSP1137-20121227|485_1   8 VGFVGLGNMGSRMAANLLRKGCRVVAYDTQQGAMGRLR-D-AGAQTVESPALVSRVLAEQTESGVLISMLPGNAQVrDAYWladDSILSSVAAGTRLIDCSTIAPAIAREIAAKAEAAGCEFVDAPVSGGVVGAEAaTPAVLHCGDV 152
                8***************************9999888864.4.455566666666666665555555555655555565554233489*************9877777777777888999****************7527999998865 PP

>> TIGR03026  NDP-sugDHase: nucleotide sugar dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.0   6.6e-06    0.0034       1      50 [.       6      56 ..       6      80 .. 0.79
   2 ?    1.2   0.0     0.052        26     196     260 ..     147     213 ..     140     213 .. 0.82

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 6.6e-06
  TIGR03026  1 mkiavvGlGYvGlplaallaekgheVvgvDidkekveklnkgkspi.kepg 50
               m++  vGlG +G  +aa l +kg +Vv  D ++    +l+    +  + p 
  MMETSP1137-20121227|485_1  6 MTVGFVGLGNMGSRMAANLLRKGCRVVAYDTQQGAMGRLRDAGAQTvESPA 56
               8999********************************999865544404444 PP

  == domain 2    score: 1.2 bits;  conditional E-value: 0.052
  TIGR03026 196 vlvtsietAeliKlaeNtfravkiafiNelariceklgidvkevieaagldpr..igknflrpGlGv 260
                ++  ++ + +++Kl +N  +av +  + e   + e+lg+d k ++ ++++      + + ++p +Gv
  MMETSP1137-20121227|485_1 147 LHCGDVGSGQAAKLSNNLVLAVSMIGVAEGMLLGERLGVDKKVLASIFNSSSArcWSSDTYNPCPGV 213
                55567778899***********9999999999*********99999999877655677777777775 PP

>> TIGR00112  proC: pyrroline-5-carboxylate reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.0   1.5e-06   0.00075       1     107 [.       8     110 ..       8     123 .. 0.79

  Alignments for each domain:
  == domain 1    score: 17.0 bits;  conditional E-value: 1.5e-06
  TIGR00112   1 iaiiGaGnmgeallsgllkkgakakkeilvierseeklaalakelgvevtsdaeeavkeadvvllavKPqdleevlaelkseektkeklliSilAGvtiekleqlle 107
                ++++G Gnmg+ +++ ll+kg +  +       +   ++a a+++++ +  +++ a++ ++ vl+++ P +++   a +     + +++l S++AG+++ + ++ ++
  MMETSP1137-20121227|485_1   8 VGFVGLGNMGSRMAANLLRKGCRVVAYDTQQGAMGRLRDAGAQTVESPALVSRVLAEQTESGVLISMLPGNAQVRDA-YWL---ADDSILSSVAAGTRLIDCSTIAP 110
                68******************9886555555566677777888888888888889999999*********99874433.333...36899*******99877766655 PP

>> TIGR03911  pyrrolys_PylD: pyrrolysine biosynthesis protein PylD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.0   1.3e-05    0.0065     148     184 ..       8      44 ..       2     121 .. 0.87

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 1.3e-05
  TIGR03911 148 vlviGlGkvGtaaavalvkkGakvyvydkekellekl 184
                v  +GlG++G   a+ l+ kG +v +yd+++  + +l
  MMETSP1137-20121227|485_1   8 VGFVGLGNMGSRMAANLLRKGCRVVAYDTQQGAMGRL 44 
                6679*************************99888766 PP

>> TIGR01327  PGDH: phosphoglycerate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.1   5.8e-05      0.03     139     168 ..       6      35 ..       3      42 .. 0.94

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 5.8e-05
  TIGR01327 139 ktlGviGlGriGsevakrakalgmkvlayD 168
                 t+G +GlG++Gs++a      g +v+ayD
  MMETSP1137-20121227|485_1   6 MTVGFVGLGNMGSRMAANLLRKGCRVVAYD 35 
                599**************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (290 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       157  (0.038274); expected 82.0 (0.02)
Passed bias filter:                      118  (0.0287665); expected 82.0 (0.02)
Passed Vit filter:                        26  (0.00633837); expected 4.1 (0.001)
Passed Fwd filter:                         8  (0.00195027); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.34u 0.14s 00:00:00.48 Elapsed: 00:00:00.48
# Mc/sec: 797.43
//
Query:       MMETSP1137-20121227|486_1  [L=630]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (630 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       202  (0.0492443); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.15s 00:00:00.56 Elapsed: 00:00:00.60
# Mc/sec: 1385.89
//
Query:       MMETSP1137-20121227|487_1  [L=144]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      1e-07   28.5   0.0    1.2e-07   28.2   0.0    1.0  1  TIGR02278 PaaN-DH: phenylacetic acid degradation protein paaN
  ------ inclusion threshold ------
       0.03   12.4   0.0      0.044   11.8   0.0    1.3  1  TIGR02286 PaaD: phenylacetic acid degradation protein PaaD


Domain annotation for each model (and alignments):
>> TIGR02278  PaaN-DH: phenylacetic acid degradation protein paaN
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.2   0.0   5.6e-11   1.2e-07     544     655 ..       2     105 ..       1     113 [. 0.86

  Alignments for each domain:
  == domain 1    score: 28.2 bits;  conditional E-value: 5.6e-11
  TIGR02278 544 edivefaelsgdtfyahvdeiaakesplfgkrvahGylvlsaaaGlfvdpapGPvlanyGlenlrflePvkaddsikvrltvkrktprkekeagevewdvevvnqedepvas 655
                ++++ fa+l+ d+   h+d+  a+    f   v+hG +  s+   +  +  pG v a    ++l f +Pv  +d++   +t   + p     +  ++++++  nq++e+v s
  MMETSP1137-20121227|487_1   2 AEVQAFASLTDDHNPMHTDKGFAQSG-RFRAPVVHGMFYASMFGAIVSKRHPGAVYA---SQSLDFKRPVMLGDTVTATVTLLSIGPS----GRILHFQTVCSNQRGEIVLS 105
                6899*****************99988.99*************9999999****8855...5778899*********999998887775....44667888888888888865 PP

>> TIGR02286  PaaD: phenylacetic acid degradation protein PaaD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   2.1e-05     0.044      44      85 ..      41      82 ..      34     110 .. 0.76

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 2.1e-05
  TIGR02286 44 saFAlacNsageaaVAaevtidflrparagevlvAeAkevsr 85
               s F  +   +   aV a+ ++df rp   g++++A+ +  s 
  MMETSP1137-20121227|487_1 41 SMFGAIVSKRHPGAVYASQSLDFKRPVMLGDTVTATVTLLSI 82
               5677777888889**********************9876654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (144 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        56  (0.0136519); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.16u 0.17s 00:00:00.33 Elapsed: 00:00:00.30
# Mc/sec: 633.55
//
Query:       MMETSP1137-20121227|488_1  [L=381]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (381 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        75  (0.0182838); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.14s 00:00:00.43 Elapsed: 00:00:00.43
# Mc/sec: 1169.48
//
Query:       MMETSP1137-20121227|489_1  [L=260]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (260 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        81  (0.0197465); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.17s 00:00:00.39 Elapsed: 00:00:00.36
# Mc/sec: 953.25
//
Query:       MMETSP1137-20121227|490_1  [L=70]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        47  (0.0114578); expected 82.0 (0.02)
Passed bias filter:                       39  (0.00950756); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.13s 00:00:00.25 Elapsed: 00:00:00.31
# Mc/sec: 298.04
//
Query:       MMETSP1137-20121227|491_1  [L=315]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (315 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        90  (0.0219405); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.17s 00:00:00.43 Elapsed: 00:00:00.44
# Mc/sec: 944.92
//
Query:       MMETSP1137-20121227|492_1  [L=785]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0031   13.8   0.0     0.0086   12.3   0.0    1.7  1  TIGR03788 marine_srt_targ: marine proteobacterial sortase target protein


Domain annotation for each model (and alignments):
>> TIGR03788  marine_srt_targ: marine proteobacterial sortase target protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.3   0.0   2.1e-06    0.0086     251     384 ..       9     164 ..       4     261 .. 0.73

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 2.1e-06
  TIGR03788 251 eeyllvlllPPeeaaaaqslk.RevvfviDtsGsmage.sie............q...AksalllalsqLkpkDrfnvieFdsdvellfkkavpAtaenlerArqfvagLqAdGGtEmaeaLeaale......daaseesgalrqvvFltDGavgnE 384
                ++ l+ +l+PP+++  +  +      fviD sGsm+++ s++            q    k++ ++ +  L ++D + ++ + ++++ + + +   ++  ++rA + v+gL+ d  t++++ L++ ++       +++  +++   ++  tDG  + E
  MMETSP1137-20121227|492_1   9 DDTLMCTLVPPQTKPGSIGVTcGAYCFVIDVSGSMNAAaSVTtddgdkvnhgwsQldiGKHSTNTFIASLGSEDFVCLVTYSDAASVVLDWT-RCDEAGIARATEAVNGLRPDRRTNLMAGLNTGFKqllalpVDDADLHRYALDMIVTTDGMPSAE 164
                56678999***888888877757899*********864244311111111111122225788888899999999999999999988877655.567888999***************9999998777666666566666667777888899977766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (785 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        96  (0.0234032); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.13s 00:00:00.65 Elapsed: 00:00:00.66
# Mc/sec: 1569.87
//
Query:       MMETSP1137-20121227|493_1  [L=181]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (181 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        69  (0.0168211); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.17s 00:00:00.36 Elapsed: 00:00:00.28
# Mc/sec: 853.22
//
Query:       MMETSP1137-20121227|494_1  [L=162]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (162 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       172  (0.0419308); expected 82.0 (0.02)
Passed bias filter:                      126  (0.0307167); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.18s 00:00:00.38 Elapsed: 00:00:00.31
# Mc/sec: 689.75
//
Query:       MMETSP1137-20121227|495_1  [L=223]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (223 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.16s 00:00:00.36 Elapsed: 00:00:00.38
# Mc/sec: 774.57
//
Query:       MMETSP1137-20121227|496_1  [L=458]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (458 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        86  (0.0209654); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.17s 00:00:00.49 Elapsed: 00:00:00.43
# Mc/sec: 1405.84
//
Query:       MMETSP1137-20121227|497_1  [L=247]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (247 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       117  (0.0285227); expected 82.0 (0.02)
Passed bias filter:                       99  (0.0241346); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.13s 00:00:00.35 Elapsed: 00:00:00.35
# Mc/sec: 931.47
//
Query:       MMETSP1137-20121227|499_1  [L=318]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (318 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        86  (0.0209654); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.16s 00:00:00.41 Elapsed: 00:00:00.35
# Mc/sec: 1199.22
//
Query:       MMETSP1137-20121227|500_1  [L=347]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (347 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        59  (0.0143832); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.13s 00:00:00.38 Elapsed: 00:00:00.38
# Mc/sec: 1205.27
//
Query:       MMETSP1137-20121227|501_1  [L=368]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (368 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        76  (0.0185275); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.16s 00:00:00.44 Elapsed: 00:00:00.47
# Mc/sec: 1033.45
//
Query:       MMETSP1137-20121227|502_1  [L=453]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (453 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        65  (0.0158459); expected 82.0 (0.02)
Passed bias filter:                       44  (0.0107265); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.16s 00:00:00.47 Elapsed: 00:00:00.60
# Mc/sec: 996.52
//
Query:       MMETSP1137-20121227|503_1  [L=217]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (217 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        29  (0.00706972); expected 82.0 (0.02)
Passed bias filter:                       29  (0.00706972); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.16s 00:00:00.37 Elapsed: 00:00:00.30
# Mc/sec: 954.72
//
Query:       MMETSP1137-20121227|505_1  [L=219]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (219 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        57  (0.0138957); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.14s 00:00:00.35 Elapsed: 00:00:00.28
# Mc/sec: 1032.34
//
Query:       MMETSP1137-20121227|506_1  [L=91]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (91 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        36  (0.00877621); expected 82.0 (0.02)
Passed bias filter:                       36  (0.00877621); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.15s 00:00:00.30 Elapsed: 00:00:00.41
# Mc/sec: 292.95
//
Query:       MMETSP1137-20121227|507_1  [L=164]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.2e-25   87.4   0.0    1.6e-25   87.0   0.0    1.1  1  TIGR01068 thioredoxin: thioredoxin
    1.1e-13   49.3   0.0    1.9e-13   48.5   0.0    1.3  1  TIGR01126 pdi_dom: protein disulfide-isomerase domain
    1.8e-13   48.7   0.0    2.5e-13   48.2   0.0    1.2  1  TIGR01130 ER_PDI_fam: protein disulfide isomerases
    0.00035   18.0   0.0    0.00049   17.6   0.0    1.2  1  TIGR00385 dsbE: periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily
     0.0091   13.6   0.0      0.012   13.2   0.0    1.1  1  TIGR02187 GlrX_arch: glutaredoxin-like domain protein
  ------ inclusion threshold ------
       0.01   14.2   0.1       0.02   13.2   0.0    1.5  1  TIGR02196 GlrX_YruB: glutaredoxin-like protein, YruB-family
      0.012   13.9   0.0       0.02   13.2   0.0    1.4  1  TIGR02200 GlrX_actino: glutaredoxin-like protein


Domain annotation for each model (and alignments):
>> TIGR01068  thioredoxin: thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.0   0.0   2.8e-28   1.6e-25       4      91 ..      38     121 ..      35     131 .. 0.86

  Alignments for each domain:
  == domain 1    score: 87.0 bits;  conditional E-value: 2.8e-28
  TIGR01068   4 enfeetvas.sdklvlvDfwAeWCgpCkmlaPvleelakeleekvkvvKlnvdeeqeiaakygirsiPtlllfkngkevkrvvGakpka 91 
                e+++e++++ ++klv+vD++AeWCgpCk laP ++ la     ++ +vK++vd+++e+a+  +++s+Pt+ +++ngk+v++ vGa +  
  MMETSP1137-20121227|507_1  38 EELREVLQEaGSKLVVVDYFAEWCGPCKKLAPFIDSLA----XTAFFVKVDVDKSREMASXHNVKSMPTMQFYRNGKQVDQLVGADK-V 121
                56666665425789***********************9....4567**************************************965.4 PP

>> TIGR01126  pdi_dom: protein disulfide-isomerase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.5   0.0   3.2e-16   1.9e-13       6      84 ..      40     112 ..      36     127 .. 0.84

  Alignments for each domain:
  == domain 1    score: 48.5 bits;  conditional E-value: 3.2e-16
  TIGR01126   6 fdelvld.enkdvlvefyaPWCGhCkklaPeyeklakelkkeeekvkiakvdataekelaskfkvsgfPtlkffkkgkke 84 
                + e++++  +k v+v+++a WCG CkklaP  ++la +           kvd ++ +e+as  +v++ Pt++f+++gk+ 
  MMETSP1137-20121227|507_1  40 LREVLQEaGSKLVVVDYFAEWCGPCKKLAPFIDSLAXTA-------FFVKVDVDKSREMASXHNVKSMPTMQFYRNGKQV 112
                55555541468899********************99754.......4789***************************973 PP

>> TIGR01130  ER_PDI_fam: protein disulfide isomerases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.2   0.0   4.2e-16   2.5e-13       8      94 ..      37     118 ..      30     142 .. 0.80

  Alignments for each domain:
  == domain 1    score: 48.2 bits;  conditional E-value: 4.2e-16
  TIGR01130   8 kenfddlike..nelvLveFYAPWCGHCksLaPeYekAAeelkkkspkvklakvDateekelaqkygvsGyPtLkifrngesssdYnGp 94 
                +e++ ++++e  ++lv+v ++A WCG Ck+LaP  ++ A     +      +kvD  + +e+a+ ++v+  Pt++++rng+++ +  G+
  MMETSP1137-20121227|507_1  37 EEELREVLQEagSKLVVVDYFAEWCGPCKKLAPFIDSLA----XT---AFFVKVDVDKSREMASXHNVKSMPTMQFYRNGKQVDQLVGA 118
                567778887633689******************765544....34...4899*****************************98887776 PP

>> TIGR00385  dsbE: periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.0   8.3e-07   0.00049      63     100 ..      49      85 ..      29     100 .. 0.75

  Alignments for each domain:
  == domain 1    score: 17.6 bits;  conditional E-value: 8.3e-07
  TIGR00385  63 gklvLlnvwasWCptCraehplLkelakeglrivgvdy 100
                +klv+++ +a WC++C++  p++  la +    v vd 
  MMETSP1137-20121227|507_1  49 SKLVVVDYFAEWCGPCKKLAPFIDSLAXTA-FFVKVDV 85 
                46888999*******************994.4455554 PP

>> TIGR02187  GlrX_arch: glutaredoxin-like domain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   0.0     2e-05     0.012       5      89 ..      36     111 ..      32     117 .. 0.74

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 2e-05
  TIGR02187   5 dkeilkeeflkelknpvelvvFtdeskekCeyCeetkqlleelsevsdklkleiydldteedkekvekykvervPtvileeegsk 89 
                d+e+l+e +++   + v +  F +     C  C+++  +++ l+  +  +k+++     ++++e+++ ++v  +Pt+ ++++g++
  MMETSP1137-20121227|507_1  36 DEEELREVLQEAGSKLVVVDYFAE----WCGPCKKLAPFIDSLAXTAFFVKVDV-----DKSREMASXHNVKSMPTMQFYRNGKQ 111
                566777774444444455555544....79999999999999998888777765.....4678*****************99954 PP

>> TIGR02196  GlrX_YruB: glutaredoxin-like protein, YruB-family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   3.5e-05      0.02       5      54 ..      56     103 ..      51     120 .. 0.74

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 3.5e-05
  TIGR02196   5 YttpwCppCkkakeyLkskgiafeeidvekdsaaaeellkklgqrsvPvi 54 
                Y  +wC+pCkk+  ++ s      ++ v+ d     e+ +  + +s P++
  MMETSP1137-20121227|507_1  56 YFAEWCGPCKKLAPFIDSLA--XTAFFVKVDVDKSREMASXHNVKSMPTM 103
                999************99865..4455555555555666667777777776 PP

>> TIGR02200  GlrX_actino: glutaredoxin-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   3.4e-05      0.02       5      40 ..      56      93 ..      52     113 .. 0.72

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 3.4e-05
  TIGR02200  5 YatswCgyCaslkrtLdkdg..aeYevvdiekdeeaad 40
               Y ++wCg C++l   +d+    a +  vd++k  e a 
  MMETSP1137-20121227|507_1 56 YFAEWCGPCKKLAPFIDSLAxtAFFVKVDVDKSREMAS 93
               999*************9876114566777777666553 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (164 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       189  (0.0460751); expected 82.0 (0.02)
Passed bias filter:                      181  (0.0441248); expected 82.0 (0.02)
Passed Vit filter:                        19  (0.00463189); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.21u 0.11s 00:00:00.32 Elapsed: 00:00:00.40
# Mc/sec: 541.16
//
Query:       MMETSP1137-20121227|508_1  [L=459]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (459 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        68  (0.0165773); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.15s 00:00:00.44 Elapsed: 00:00:00.35
# Mc/sec: 1730.94
//
Query:       MMETSP1137-20121227|509_1  [L=376]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (376 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       266  (0.0648464); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.15s 00:00:00.43 Elapsed: 00:00:00.49
# Mc/sec: 1012.81
//
Query:       MMETSP1137-20121227|510_1  [L=184]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (184 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       114  (0.0277913); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.16s 00:00:00.34 Elapsed: 00:00:00.33
# Mc/sec: 735.94
//
Query:       MMETSP1137-20121227|511_1  [L=731]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (731 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        92  (0.0224281); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.18s 00:00:00.62 Elapsed: 00:00:00.51
# Mc/sec: 1891.84
//
Query:       MMETSP1137-20121227|512_1  [L=854]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (854 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       202  (0.0492443); expected 82.0 (0.02)
Passed bias filter:                      107  (0.0260848); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.58u 0.18s 00:00:00.76 Elapsed: 00:00:00.46
# Mc/sec: 2450.41
//
Query:       MMETSP1137-20121227|513_1  [L=252]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (252 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        95  (0.0231594); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.16s 00:00:00.38 Elapsed: 00:00:00.30
# Mc/sec: 1108.71
//
Query:       MMETSP1137-20121227|515_1  [L=552]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (552 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        43  (0.0104827); expected 82.0 (0.02)
Passed bias filter:                       34  (0.00828864); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.16s 00:00:00.53 Elapsed: 00:00:00.33
# Mc/sec: 2207.82
//
Query:       MMETSP1137-20121227|516_1  [L=164]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (164 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        87  (0.0212092); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.16s 00:00:00.34 Elapsed: 00:00:00.30
# Mc/sec: 721.54
//
Query:       MMETSP1137-20121227|517_1  [L=334]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (334 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        72  (0.0175524); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.16s 00:00:00.42 Elapsed: 00:00:00.38
# Mc/sec: 1160.11
//
Query:       MMETSP1137-20121227|518_1  [L=186]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.6e-28   95.5   0.0    9.2e-22   75.0   0.0    2.0  2  TIGR01642 U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor
    3.7e-15   53.7   0.0    1.3e-12   45.4   0.0    2.0  2  TIGR01622 SF-CC1: splicing factor, CC1-like family
    4.6e-05   20.2   0.0    0.00017   18.3   0.0    1.8  2  TIGR01645 half-pint: poly-U binding splicing factor, half-pint family
  ------ inclusion threshold ------
      0.025   11.5   0.0      0.035   11.1   0.0    1.1  1  TIGR01628 PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family


Domain annotation for each model (and alignments):
>> TIGR01642  U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.0     1e-07    0.0001     207     269 ..       3      64 ..       1      71 [. 0.86
   2 !   75.0   0.0     9e-25   9.2e-22     409     505 ..      95     186 .]      90     186 .] 0.95

  Alignments for each domain:
  == domain 1    score: 18.8 bits;  conditional E-value: 1e-07
  TIGR01642 207 dkaedgkavkaviinkdkkFaflEfrtveeatlalal.dsiiyenvslkirRphdYiPvpeatp 269
                d+++ g++ +++ +  d kFa +Efr   ++t al l d + + + +l ++Rp+ Yi  p  +p
  MMETSP1137-20121227|518_1   3 DEST-GPPCLNIDLSADGKFAXVEFRDEAITTIALTLfDKMELCGRPLNVGRPRGYI-EPGSQP 64 
                5566.88999999********************9985499****************9.665655 PP

  == domain 2    score: 75.0 bits;  conditional E-value: 9e-25
  TIGR01642 409 ptkvvqLtnlvlaedllddeeYeeiledvkeeaskyGtlkniviPrpnkdrseteGvGKvFleyadvasaekAreelnGrkFekrvvvaafysedky 505
                +t+ + L ++++++ l ddeeY+++led++ e++++G++ +++iPr        + vG  F+ +ad ++a k +++l+ r+F+++ vvaaf +e  +
  MMETSP1137-20121227|518_1  95 ATRCIRLDKMITSDMLEDDEEYKDVLEDIRLECERFGKVEQVKIPRQ-----GEPNVGACFVLFADKEGAAKGQQMLHNRQFDGNSVVAAFIPETDF 186
                799*******************************************9.....56889***********************************99765 PP

>> TIGR01622  SF-CC1: splicing factor, CC1-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.9   0.0   0.00056      0.58     263     295 ..      21      53 ..      14      63 .. 0.90
   2 !   45.4   0.0   1.2e-15   1.3e-12     377     490 ..      67     183 ..      55     186 .] 0.85

  Alignments for each domain:
  == domain 1    score: 6.9 bits;  conditional E-value: 0.00056
  TIGR01622 263 yGFiqFsdaeeakeAleklNGlelAGReikvgl 295
                +  ++F+d   +  Al+ +  +el GR++ vg 
  MMETSP1137-20121227|518_1  21 FAXVEFRDEAITTIALTLFDKMELCGRPLNVGR 53 
                66799**************************97 PP

  == domain 2    score: 45.4 bits;  conditional E-value: 1.2e-15
  TIGR01622 377 elqaslsetsvlkalaeasfvpse.vnlaseclvLsNmFdpateeeenfdkeikdDvkeEcskkggv..vhiyvdkknsaGkvYlkfdsveaalaavkalngRyFagklitAafvvk 490
                 l++sl+  + +++   ++++p+  +  a++c+ L  m  +++ e+ +  k++ +D++ Ec++ g+v  v+i  + +   G  ++ f + e+a++ +++l+ R F g+ + Aaf+++
  MMETSP1137-20121227|518_1  67 GLPTSLPLLGGQPPAPPPAPIPPAvNPAATRCIRLDKMITSDMLEDDEEYKDVLEDIRLECERFGKVeqVKIPRQGEPNVGACFVLFADKEGAAKGQQMLHNRQFDGNSVVAAFIPE 183
                567788888888888889999999455899***********9988888889**************993344555666788***********************************87 PP

>> TIGR01645  half-pint: poly-U binding splicing factor, half-pint family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.0     0.085        87     149     182 ..      21      55 ..      15      71 .. 0.72
   2 !   18.3   0.0   1.7e-07   0.00017     513     594 ..     104     179 ..      88     185 .. 0.78

  Alignments for each domain:
  == domain 1    score: -0.6 bits;  conditional E-value: 0.085
  TIGR01645 149 fafveevPea.allaleqmngallGGrnlkvgrPs 182
                fa ve   ea + +al   + + l Gr l vgrP+
  MMETSP1137-20121227|518_1  21 FAXVEFRDEAiTTIALTLFDKMELCGRPLNVGRPR 55 
                77777666662356777777777888888888886 PP

  == domain 2    score: 18.3 bits;  conditional E-value: 1.7e-07
  TIGR01645 513 ivlrnmvtPkdidetlegeireecgkfgvvdrviiyqekqgeeedaeilvkifvefsasaevdrakealdGrffgGrkvvae 594
                ++  +m++ ++  +++ ++ir ec +fg v++v i   +qge      +   fv f++   + ++++ l  r f G+ vva 
  MMETSP1137-20121227|518_1 104 MITSDMLEDDEEYKDVLEDIRLECERFGKVEQVKIP--RQGEP----NVGACFVLFADKEGAAKGQQMLHNRQFDGNSVVAA 179
                4455555554444556689**************886..56643....36779****************************95 PP

>> TIGR01628  PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   3.4e-05     0.035     195     245 ..     123     172 ..     114     180 .. 0.85

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 3.4e-05
  TIGR01628 195 lrelFakfGeitSaivkkdeknrkrgfafvnyekaedAkkAveelngkkit 245
                +r    +fG++  +++ ++ + +  g +fv ++++e A+k  + l++++++
  MMETSP1137-20121227|518_1 123 IRLECERFGKVEQVKIPRQGEPNV-GACFVLFADKEGAAKGQQMLHNRQFD 172
                56667899********99999995.99*************99999998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (186 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        71  (0.0173086); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.23u 0.13s 00:00:00.36 Elapsed: 00:00:00.40
# Mc/sec: 613.75
//
Query:       MMETSP1137-20121227|519_1  [L=218]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (218 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       101  (0.0246221); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.13s 00:00:00.34 Elapsed: 00:00:00.65
# Mc/sec: 442.67
//
Query:       MMETSP1137-20121227|520_1  [L=476]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (476 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        88  (0.0214529); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.14s 00:00:00.47 Elapsed: 00:00:00.45
# Mc/sec: 1396.15
//
Query:       MMETSP1137-20121227|521_1  [L=225]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (225 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        67  (0.0163335); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.12s 00:00:00.31 Elapsed: 00:00:00.44
# Mc/sec: 674.94
//
Query:       MMETSP1137-20121227|522_1  [L=59]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (59 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        95  (0.0231594); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.31
# Mc/sec: 251.21
//
Query:       MMETSP1137-20121227|523_1  [L=384]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.2e-08   32.5   0.0    5.8e-08   31.2   0.0    1.7  2  TIGR01444 fkbM_fam: methyltransferase, FkbM family


Domain annotation for each model (and alignments):
>> TIGR01444  fkbM_fam: methyltransferase, FkbM family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.0      0.79   3.3e+03      23      37 ..     116     130 ..     113     135 .. 0.79
   2 !   31.2   0.0   1.4e-11   5.8e-08      47     143 .]     226     325 ..     214     325 .. 0.77

  Alignments for each domain:
  == domain 1    score: -3.7 bits;  conditional E-value: 0.79
  TIGR01444  23 grviafEPlpdllek 37 
                 +v+ fE++p l++ 
  MMETSP1137-20121227|523_1 116 FEVYGFEASPLLHQY 130
                579999999999875 PP

  == domain 2    score: 31.2 bits;  conditional E-value: 1.4e-11
  TIGR01444  47 lknvkllnaAvgdreg..eleftvsddatgnsslaadselaeeseieVevvtlddlveeag.lekvdllKiDvEGaEleVLrgl.aetleekvpaivlevh 143
                +++ ++++aA++d++   ++  +     +g+s ++ d++  ee ++ V++v +  +++e    +++  +K+DvEGaE+ +L+ + ++++   ++++  e+h
  MMETSP1137-20121227|523_1 226 IPQYTFIPAAASDKDSfaTIAGSAQAMIRGGSHIDEDHK-LEELNFRVRTVDIPTWIAESFtSDDFVQVKMDVEGAEFAILNSMvRQKTAGLIDVLAWECH 325
                556788999*****9955444444445677788888875.5555799********9988655999*****************9988887777777777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (384 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        84  (0.0204778); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.27u 0.16s 00:00:00.43 Elapsed: 00:00:00.33
# Mc/sec: 1535.87
//
Query:       MMETSP1137-20121227|524_1  [L=375]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (375 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       100  (0.0243784); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.14s 00:00:00.42 Elapsed: 00:00:00.32
# Mc/sec: 1546.75
//
Query:       MMETSP1137-20121227|525_1  [L=336]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (336 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        96  (0.0234032); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.17s 00:00:00.43 Elapsed: 00:00:00.36
# Mc/sec: 1231.90
//
Query:       MMETSP1137-20121227|526_1  [L=234]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.4e-42  142.7   0.6    6.2e-41  138.6   0.4    1.9  1  TIGR01327 PGDH: phosphoglycerate dehydrogenase
    1.6e-05   21.8   0.4    3.9e-05   20.4   0.1    1.6  2  TIGR00936 ahcY: adenosylhomocysteinase
    3.6e-05   21.0   0.1    5.3e-05   20.4   0.0    1.2  1  TIGR02853 spore_dpaA: dipicolinic acid synthetase, A subunit
    0.00048   17.2   0.0    0.00063   16.8   0.0    1.2  1  TIGR03911 pyrrolys_PylD: pyrrolysine biosynthesis protein PylD
  ------ inclusion threshold ------
       0.02   11.5   0.1      0.026   11.1   0.0    1.2  1  TIGR03026 NDP-sugDHase: nucleotide sugar dehydrogenase


Domain annotation for each model (and alignments):
>> TIGR01327  PGDH: phosphoglycerate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  138.6   0.4   7.6e-44   6.2e-41     107     312 ..       1     229 [.       1     234 [] 0.93

  Alignments for each domain:
  == domain 1    score: 138.6 bits;  conditional E-value: 7.6e-44
  TIGR01327 107 llalaRkipqadksvkekkWerkkflGtElygktlGviGlGriGsevakrakalgmkvlayDPyiseekaeklgvellkdldellaeaDvitvHvPltketkgligkeelakmKkgviivNcaRGGiidEkALvealeegkvraaalDvfekEPpt.........................dnklleldnvvvtpHlgAsteEaqenvavevaeevlealkgevvesavNl 312
                +l+l R+i +a+++v+ +++  +  +G ++ gkt+GviG G+iG  v++   ++g +v+a+D    +e a +lgv++++ l+ell+++ +it+H Plt+ tk +i+++++ +m++gv+++N++RG ++d +A+v al++ ++  +++Dv+ekE                             + l + +nv vtpH +  t+Ea + +a + + +++++++g    +av +
  MMETSP1137-20121227|526_1   1 MLSLNRQIVKATERVRYGNFALSGLVGFDMHGKTVGVIGTGKIGRAVSSILLGMGCEVIAHDVK-QSEDALRLGVRYVS-LNELLERSHIITLHCPLTESTKYIIDADSISRMRRGVMLINTSRGALLDTAAVVAALNSRQIGSLGIDVYEKEQDGlffndlssltdgqpgaslpddwdeqLSALGARPNVLVTPHSAFLTAEALHGIAETTVTNLKQFAQGGECANAVCT 229
                899***********************************************************65.567899*****666.*************************************************************************9878888899999999999999999443345566799***********************************999965 PP

>> TIGR00936  ahcY: adenosylhomocysteinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   0.1   4.7e-08   3.9e-05     203     291 ..      30     120 ..      22     140 .. 0.85
   2 ?   -1.2   0.0      0.17   1.4e+02     139     175 ..     200     233 ..     187     234 .] 0.67

  Alignments for each domain:
  == domain 1    score: 20.4 bits;  conditional E-value: 4.7e-08
  TIGR00936 203 iaGktvvvaGyGwvGkGvaerlrGlGarvivtevdpikaleaamdGfevvtmeeaakegdifvt....atGnkdvireehlekmkdgailana 291
                + Gktv v+G G +G+ v+  l G+G +vi  +v +    +a   G + v+++e  + ++i+      +  +k +i+++ +++m+ g +l n+
  MMETSP1137-20121227|526_1  30 MHGKTVGVIGTGKIGRAVSSILLGMGCEVIAHDVKQS--EDALRLGVRYVSLNELLERSHIITLhcplTESTKYIIDADSISRMRRGVMLINT 120
                67*****************************999864..477788999999999999998875422224467889*************99996 PP

  == domain 2    score: -1.2 bits;  conditional E-value: 0.17
  TIGR00936 139 lekvlGvseetttGvirLralakeGkLkfpviavnda 175
                +e + G++e t   v++L+++a+ G+ + +v    da
  MMETSP1137-20121227|526_1 200 AEALHGIAETT---VTNLKQFAQGGECANAVCTARDA 233
                45555665533...66788888888877777666665 PP

>> TIGR02853  spore_dpaA: dipicolinic acid synthetase, A subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   0.0   6.5e-08   5.3e-05     147     238 ..      28     119 ..      22     129 .. 0.83

  Alignments for each domain:
  == domain 1    score: 20.4 bits;  conditional E-value: 6.5e-08
  TIGR02853 147 ftihgsrvlvlGlGrtGktiarllsalgakvsvaareskdlarilelglepvelkeleekvaeiDi..vintiPalvltkdvlsklpkhaviiD 238
                f +hg  v v+G G++G++++  l ++g++v   a++ k+   +l lg++ v+l+el e+ + i +   +    + ++++d++s++++  ++i+
  MMETSP1137-20121227|526_1  28 FDMHGKTVGVIGTGKIGRAVSSILLGMGCEV--IAHDVKQSEDALRLGVRYVSLNELLERSHIITLhcPLTESTKYIIDADSISRMRRGVMLIN 119
                678*********************9999876..58888888888999*********987655555411566667899*********99988876 PP

>> TIGR03911  pyrrolys_PylD: pyrrolysine biosynthesis protein PylD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0   7.6e-07   0.00063     136     178 ..      23      65 ..       4     108 .. 0.81

  Alignments for each domain:
  == domain 1    score: 16.8 bits;  conditional E-value: 7.6e-07
  TIGR03911 136 ldllkaglkekdvlviGlGkvGtaaavalvkkGakvyvydkek 178
                + l+  +++ k v viG+Gk+G+a +  l+  G +v ++d ++
  MMETSP1137-20121227|526_1  23 SGLVGFDMHGKTVGVIGTGKIGRAVSSILLGMGCEVIAHDVKQ 65 
                3344558999****************************99865 PP

>> TIGR03026  NDP-sugDHase: nucleotide sugar dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   3.2e-05     0.026       2      42 ..      34      73 ..      33     107 .. 0.83

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 3.2e-05
  TIGR03026  2 kiavvGlGYvGlplaallaekgheVvgvDidkekveklnkg 42
               ++ v+G+G +G +++ +l  +g eV+  D+++   ++l+ g
  MMETSP1137-20121227|526_1 34 TVGVIGTGKIGRAVSSILLGMGCEVIAHDVKQSE-DALRLG 73
               799***************************9875.555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (234 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       160  (0.0390054); expected 82.0 (0.02)
Passed bias filter:                      140  (0.0341297); expected 82.0 (0.02)
Passed Vit filter:                        31  (0.00755729); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.25u 0.16s 00:00:00.41 Elapsed: 00:00:00.41
# Mc/sec: 753.30
//
Query:       MMETSP1137-20121227|527_1  [L=70]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        60  (0.014627); expected 82.0 (0.02)
Passed bias filter:                       38  (0.00926377); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.15s 00:00:00.27 Elapsed: 00:00:00.26
# Mc/sec: 355.36
//
Query:       MMETSP1137-20121227|528_1  [L=115]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (115 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        43  (0.0104827); expected 82.0 (0.02)
Passed bias filter:                       41  (0.00999512); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.16s 00:00:00.31 Elapsed: 00:00:00.46
# Mc/sec: 329.97
//
Query:       MMETSP1137-20121227|529_1  [L=235]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (235 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        73  (0.0177962); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.13s 00:00:00.33 Elapsed: 00:00:00.33
# Mc/sec: 939.92
//
Query:       MMETSP1137-20121227|531_1  [L=72]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        54  (0.0131643); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:00.27
# Mc/sec: 351.97
//
Query:       MMETSP1137-20121227|532_1  [L=231]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (231 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       123  (0.0299854); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.14s 00:00:00.37 Elapsed: 00:00:00.37
# Mc/sec: 824.04
//
Query:       MMETSP1137-20121227|533_1  [L=203]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.3e-05   21.9   0.0    3.1e-05   21.5   0.0    1.1  1  TIGR01250 pro_imino_pep_2: proline-specific peptidases
    2.6e-05   21.6   0.0    3.5e-05   21.2   0.0    1.1  1  TIGR03695 menH_SHCHC: 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase
    2.7e-05   21.8   0.0      4e-05   21.2   0.0    1.3  1  TIGR01738 bioH: putative pimeloyl-BioC--CoA transferase BioH
    9.6e-05   19.7   0.0    0.00013   19.3   0.0    1.1  1  TIGR02427 protocat_pcaD: 3-oxoadipate enol-lactonase
    0.00012   19.1   0.0    0.00016   18.6   0.0    1.1  1  TIGR03056 bchO_mg_che_rel: putative magnesium chelatase accessory protein
     0.0067   13.6   0.0     0.0089   13.2   0.0    1.1  1  TIGR03611 RutD: pyrimidine utilization protein D


Domain annotation for each model (and alignments):
>> TIGR01250  pro_imino_pep_2: proline-specific peptidases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.5   0.0   4.5e-08   3.1e-05      27     124 ..      51     147 ..      43     155 .. 0.85

  Alignments for each domain:
  == domain 1    score: 21.5 bits;  conditional E-value: 4.5e-08
  TIGR01250  27 kllvlHGGPgssheyleslkellkegvevilYDQLGsgkSdqPddsdeklltidrfvdEleevrekLaldkfyllgqSwGglLaqeYalkyqqhlkgl 124
                 ++++HG   ss   + ++   l++   vi    +G  kS +P+  +  ++t         +  ++++l ++y  gq wGglL   Ya+k  ++++g 
  MMETSP1137-20121227|533_1  51 TIVLVHGNIPSS-SLWRNVMPHLEQRGPVIAVNLFGFCKSGKPSLYNGMIYTPLDHTRNFPAFIDQVGLIQIYFAGQDWGGLLCTDYAVKHLDNVNGF 147
                678888875444.456666666666579999999*********9999999999999999999*****************************9999885 PP

>> TIGR03695  menH_SHCHC: 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.0   5.1e-08   3.5e-05       4     107 ..      51     155 ..      49     158 .. 0.86

  Alignments for each domain:
  == domain 1    score: 21.2 bits;  conditional E-value: 5.1e-08
  TIGR03695   4 vlvlLHGflgskedwqalieeleekfsvlalDLpgHGkskslk..ekeakdfeeaaqellkelleklkiekviLvGYSlGGRialalaleaperleglilesaspG 107
                ++vl+HG + s++ w++++++le++ +v+a++L g  ks +++  +   ++  + +++      ++++  +++  G   GG + +++a+++ ++++g  l+   pG
  MMETSP1137-20121227|533_1  51 TIVLVHGNIPSSSLWRNVMPHLEQRGPVIAVNLFGFCKSGKPSlyNGMIYTPLDHTRN-FPAFIDQVGLIQIYFAGQDWGGLLCTDYAVKHLDNVNGFNLVKPWPG 155
                89**********************************9997664114556666677777.78889999****************************99988776666 PP

>> TIGR01738  bioH: putative pimeloyl-BioC--CoA transferase BioH
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.0   5.8e-08     4e-05       6     101 ..      51     155 ..      47     180 .. 0.78

  Alignments for each domain:
  == domain 1    score: 21.2 bits;  conditional E-value: 5.8e-08
  TIGR01738   6 klvLihGWglnaevfadlveeLsahftlslvDLPGyGds........aelralslaevaeailaqapakai.wlGWsLGGLvalhlalthpdkvrsLvlvasspk 101
                ++vL+hG    ++++++++++L++  ++ +v+L G+ +s           ++l+      a ++q+    i + G   GGL+ +  a++h d+v++  lv   p 
  MMETSP1137-20121227|533_1  51 TIVLVHGNIPSSSLWRNVMPHLEQRGPVIAVNLFGFCKSgkpslyngMIYTPLDHTRNFPAFIDQVGLIQIyFAGQDWGGLLCTDYAVKHLDNVNGFNLVKPWPG 155
                79**********************************8852222222224678888889999999998766515799******************99888876665 PP

>> TIGR02427  protocat_pcaD: 3-oxoadipate enol-lactonase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.0   1.8e-07   0.00013      25     108 ..      61     148 ..      40     152 .. 0.85

  Alignments for each domain:
  == domain 1    score: 19.3 bits;  conditional E-value: 1.8e-07
  TIGR02427  25 dlrlwdkvlealtkdfrvlryDkrGHGlS....dvpegpysiedladdvlallDalgiekaavcGlSlGGliaqaLaarrpdrvealv 108
                + +lw++v+++l+++  v+++   G  +S        + y+  d++++  a +D++g+ ++ ++G   GGl+    a+++ d v+   
  MMETSP1137-20121227|533_1  61 SSSLWRNVMPHLEQRGPVIAVNLFGFCKSgkpsLYNGMIYTPLDHTRNFPAFIDQVGLIQIYFAGQDWGGLLCTDYAVKHLDNVNGFN 148
                568***********************99944423334568999****************************************98765 PP

>> TIGR03056  bchO_mg_che_rel: putative magnesium chelatase accessory protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.0   2.4e-07   0.00016      22      65 ..      43      86 ..      33      96 .. 0.87

  Alignments for each domain:
  == domain 1    score: 18.6 bits;  conditional E-value: 2.4e-07
  TIGR03056 22 deGpaaGPvllllhGagasshsfrklvpllaarfrvvapdlPGh 65
               + G a G +++l+hG   ss  +r+++p l +r  v+a++l G 
  MMETSP1137-20121227|533_1 43 NVGLALGATIVLVHGNIPSSSLWRNVMPHLEQRGPVIAVNLFGF 86
               578899**********************************9874 PP

>> TIGR03611  RutD: pyrimidine utilization protein D
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   0.0   1.3e-05    0.0089      14     115 ..      50     154 ..      42     165 .. 0.86

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 1.3e-05
  TIGR03611  14 evvvlssGLGGsgsywapqlevleqefrvvvyDhrGtgrspee.laed..ysiaalaadvlelldaldiekahvvGhalGgliglelalrkperlaklvlinaWs 115
                 ++vl  G   s+s w + +  leq+  v+  +  G  +s++  l ++  y+  +  ++  + +d++++ ++ + G   Ggl+  + a ++ ++++   l+  W 
  MMETSP1137-20121227|533_1  50 ATIVLVHGNIPSSSLWRNVMPHLEQRGPVIAVNLFGFCKSGKPsLYNGmiYTPLDHTRNFPAFIDQVGLIQIYFAGQDWGGLLCTDYAVKHLDNVNGFNLVKPWP 154
                689999******************************99998861555412333455788999**********************************999999995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (203 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        87  (0.0212092); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.21u 0.15s 00:00:00.36 Elapsed: 00:00:00.32
# Mc/sec: 837.31
//
Query:       MMETSP1137-20121227|534_1  [L=102]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (102 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        74  (0.01804); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.14s 00:00:00.30 Elapsed: 00:00:00.37
# Mc/sec: 363.86
//
Query:       MMETSP1137-20121227|535_1  [L=409]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (409 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        69  (0.0168211); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.16s 00:00:00.44 Elapsed: 00:00:00.47
# Mc/sec: 1148.59
//
Query:       MMETSP1137-20121227|536_1  [L=258]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0021   15.1   0.3       0.16    8.9   0.0    2.2  2  TIGR03261 phnS2: putative 2-aminoethylphosphonate ABC transporter, periplasmic 2-aminoethylphosphonate-binding protein


Domain annotation for each model (and alignments):
>> TIGR03261  phnS2: putative 2-aminoethylphosphonate ABC transporter, periplasmic 2-aminoethylphosphonate-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.3   0.0   0.00091       3.7     153     179 ..      68      94 ..      62     105 .. 0.90
   2 !    8.9   0.0   3.8e-05      0.16     148     212 ..     112     175 ..      96     188 .. 0.80

  Alignments for each domain:
  == domain 1    score: 4.3 bits;  conditional E-value: 0.00091
  TIGR03261 153 eykgkivmPnPassGtGfldvsawlqs 179
                +y+++   P P+ +GtG+ ++s  lq+
  MMETSP1137-20121227|536_1  68 QYQNHNPNPGPVYAGTGYSEMSKALQK 94 
                69999999**************99996 PP

  == domain 2    score: 8.9 bits;  conditional E-value: 3.8e-05
  TIGR03261 148 dLtkPeykgkivmPnPassGtGfldvsawlqslGedkgWdyldkldkniakythsGskPiklaga 212
                +++  +y+++   P P+ +GtG+ ++s  lq+ G +     l+     +++ t  G+ P +++g+
  MMETSP1137-20121227|536_1 112 EIIGRQYQNHNPNPGPVYAGTGYSEISKALQK-GTKAVDALLERDSSLVNEITTGGATPLHMCGM 175
                5566789************************7.65555555555555567778888888887776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (258 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       145  (0.0353486); expected 82.0 (0.02)
Passed bias filter:                      118  (0.0287665); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.25u 0.17s 00:00:00.42 Elapsed: 00:00:00.46
# Mc/sec: 740.29
//
Query:       MMETSP1137-20121227|537_1  [L=257]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (257 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        89  (0.0216967); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.14s 00:00:00.35 Elapsed: 00:00:00.36
# Mc/sec: 942.26
//
Query:       MMETSP1137-20121227|538_1  [L=403]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (403 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       175  (0.0426621); expected 82.0 (0.02)
Passed bias filter:                      103  (0.0251097); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.16s 00:00:00.48 Elapsed: 00:00:00.41
# Mc/sec: 1297.36
//
Query:       MMETSP1137-20121227|539_1  [L=176]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (176 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        74  (0.01804); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.16s 00:00:00.34 Elapsed: 00:00:00.45
# Mc/sec: 516.22
//
Query:       MMETSP1137-20121227|540_1  [L=305]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (305 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        99  (0.0241346); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.14s 00:00:00.39 Elapsed: 00:00:00.50
# Mc/sec: 805.13
//
Query:       MMETSP1137-20121227|541_1  [L=251]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (251 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        89  (0.0216967); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.12s 00:00:00.35 Elapsed: 00:00:00.35
# Mc/sec: 946.55
//
Query:       MMETSP1137-20121227|542_1  [L=345]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (345 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        76  (0.0185275); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.15s 00:00:00.41 Elapsed: 00:00:00.35
# Mc/sec: 1301.04
//
Query:       MMETSP1137-20121227|543_1  [L=400]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.9e-18   64.4   9.2    4.1e-11   40.2   0.9    2.1  2  TIGR00898 2A0119: cation transport protein
    3.7e-13   47.0   6.4    3.7e-13   47.0   4.4    2.7  2  TIGR00895 2A0115: MFS transporter, aromatic acid:H+ symporter (AAHS) family
    3.5e-08   30.7   3.3    1.1e-07   29.1   2.3    1.8  1  TIGR00891 2A0112: MFS transporter, sialate:H+ symporter (SHS) family
    1.1e-06   26.2   7.7    3.7e-06   24.4   5.3    2.0  1  TIGR00710 efflux_Bcr_CflA: drug resistance transporter, Bcr/CflA subfamily
    1.6e-06   26.1   3.1    1.6e-06   26.1   2.1    3.6  4  TIGR00880 2_A_01_02: multidrug resistance protein
    7.3e-05   19.7   4.5    7.3e-05   19.7   3.2    2.6  2  TIGR00893 2A0114: D-galactonate transporter
    9.8e-05   19.1   0.9    0.00018   18.2   0.6    1.4  1  TIGR00711 efflux_EmrB: drug resistance MFS transporter, drug:H+ antiporter-2 (14 Spanner) (DHA2) family
    0.00025   16.9   1.8    0.00063   15.5   0.7    1.8  2  TIGR01299 synapt_SV2: synaptic vesicle protein SV2


Domain annotation for each model (and alignments):
>> TIGR00898  2A0119: cation transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.2   0.9   7.9e-14   4.1e-11     130     274 ..      30     177 ..      19     184 .. 0.80
   2 !   28.6   0.9   2.5e-10   1.3e-07     316     427 ..     257     370 ..     249     373 .. 0.85

  Alignments for each domain:
  == domain 1    score: 40.2 bits;  conditional E-value: 7.9e-14
  TIGR00898 130 ltqsvvfvGvLlGslvlGqlsDrfGRkkvLllstlvtavsgvltafspnytvflvlrlLvGvgiagivvvalvLitEflpkkaRai.v..gilievffalGllllallAYlirdWRwLlllvslPlvlflvlv.wfvpESpRwlisqgr 274
                 t + +f    +Gs+++G+l+Dr GRk v + + + +++  +  a+s  +  ++ +r+L G++i+g +++++ L +E    ++  i +  + l  +   l +l+ a    ++ +WR  l ++++ l l + ++  +vpES+ wl +++ 
  MMETSP1137-20121227|543_1  30 TTRTAIFAAWAVGSTLFGNLADRVGRKPVAIGAAILALLHLLGCAASTGFKSLICFRVLGGLSIGG-MLIGFSLALESAEXSVQVIdCddAQLLRMRLQLIVLMHAACEAMLLSWRFELCAIAAMLALLAGASaRLVPESAEWLKQRRE 177
                46788888899*******************************************************.99***********9999874321233455555555555555556677**9777777777666665559********977654 PP

  == domain 2    score: 28.6 bits;  conditional E-value: 2.5e-10
  TIGR00898 316 lldllrtpklrkttlllmllwfttafsYygLvldleelggniYldllisglvelpaklitlllid..rLgRrktmaaslllagvallllllvpeelkllrtalavvgkagissa 427
                +++ l+++  r tt++l l  ++++++Y++L+l+ + +g ++ l++l+ +l +lp++ ++ +l +   +g r + ++ ++ a+ ++ +l++        + ala +gk+++++a
  MMETSP1137-20121227|543_1 257 AYAQLFSRAYRGTTIALALGFAAVSVVYFSLTLQAGSIGSSVMLNVLFLSLLDLPGYKLADFLSSqpAIGVRGASILLFAGAAGVMAALAAATAFNFRATFALASAGKLFAAGA 370
                567899999***********************************************9777666551358888888888888888888887777777788888999999998876 PP

>> TIGR00895  2A0115: MFS transporter, aromatic acid:H+ symporter (AAHS) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.0   4.4   7.2e-16   3.7e-13      41     206 ..      15     179 ..      11     212 .. 0.83
   2 ?   -2.4   4.4       0.7   3.6e+02     241     355 ..     259     370 ..     248     382 .. 0.71

  Alignments for each domain:
  == domain 1    score: 47.0 bits;  conditional E-value: 7.2e-16
  TIGR00895  41 palskewgldkvelGfllsagLiGmvlGallfgplaDrigRkrvllvsillfsvftlasalatnvtqLlvlRflaglGlGgllp.nliaLvs.EyapkrfratvvglvavGyaiGaavggllaallipafgWrslflvggiiplllllllikvLpEsikflvekkpek 206
                +a+  ++ l+ +++    +a  +  ++G+ lfg laDr+gRk+v + + +l  +  l++a +t +++L+ +R+l gl +Gg+l+    aL s E + + +    + l+ +  ++ +++ ++  a+l+    Wr  ++  +++ +ll+   ++ +pEs+++l ++++++
  MMETSP1137-20121227|543_1  15 NAIGLDLHLTDAQMLTTRTAIFAAWAVGSTLFGNLADRVGRKPVAIGAAILALLHLLGCAASTGFKSLICFRVLGGLSIGGMLIgFSLALESaEXSVQVIDCDDAQLLRMRLQLIVLMHAACEAMLL---SWRFELCAIAAMLALLAGASARLVPESAEWLKQRRESA 179
                5677788888888888888888899********************************************************9761456775437777888899999*******99999999999987...5*975554446778999999***********9995443 PP

  == domain 2    score: -2.4 bits;  conditional E-value: 0.7
  TIGR00895 241 kllfkgklakatllLwllyflllvvvYlltsWlPkLlv.eagaslskaalllvllnv.GgvlgslllgaladrlgpkvlalllllaavfavlvvstlssptllllllvilGlfvnga 355
                + lf+ ++   t++L l++++ +vv++ lt     L +   g s+   +l+l ll + G  l+ +l ++ a+ ++   ++l++ +a+v+a l+++t++++     l+    lf++ga
  MMETSP1137-20121227|543_1 259 AQLFSRAYRGTTIALALGFAAVSVVYFSLT-----LQAgSIGSSVMLNVLFLSLLDLpGYKLADFLSSQPAIGVRGASILLFAGAAGVMAALAAATAFNFRATFALASAGKLFAAGA 370
                568888999999999999999999888886.....4431457777777777777776345678888888888888888888888888888888888887776554444333455544 PP

>> TIGR00891  2A0112: MFS transporter, sialate:H+ symporter (SHS) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.1   2.3   2.2e-10   1.1e-07      42     199 ..      21     176 ..      10     198 .. 0.72

  Alignments for each domain:
  == domain 1    score: 29.1 bits;  conditional E-value: 2.2e-10
  TIGR00891  42 fdrttkdvafllsaalivrsvGalllGlwaDrvgrrlplvtsvvlfsvatllcafaptyekllivrlviGigmgGeyGlaaalaiedvPkklr..svl.sGllisgyavGfvlaavvysvvvnvlgdsWri.Lfflsilpiilalflrkrvpeaevwkeklk 199
                 ++t  ++    +a+++   vG+ l+G +aDrvgr+   + + +l  +  l ca + +++ l+  r++ G+++gG   ++ +la+e++    +  +   + ll     +     +v++++  + + +sWr+ L  ++ ++++la    ++vpe+ +w +++ 
  MMETSP1137-20121227|543_1  21 LHLTDAQMLTTRTAIFAAWAVGSTLFGNLADRVGRKPVAIGAAILALLHLLGCAASTGFKSLICFRVLGGLSIGGML-IGFSLALESAEXSVQviDCDdAQLLRMRLQL-----IVLMHAACEAMLLSWRFeLCAIAAMLALLAGASARLVPESAEWLKQRR 176
                5777788888889999***********************************************************85.3444555555444430032202233332222.....223333334444567754677777777777777888888888877655 PP

>> TIGR00710  efflux_Bcr_CflA: drug resistance transporter, Bcr/CflA subfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.4   5.3   7.3e-09   3.7e-06      33     107 ..      19      93 ..      15     170 .. 0.93

  Alignments for each domain:
  == domain 1    score: 24.4 bits;  conditional E-value: 7.3e-09
  TIGR00710  33 kdlsvsasavqltltlyllglavgqLllGplsDsyGRkpvlLlgllvfalsslvlalsenietllvlRflqafga 107
                 dl  +  ++  t t+ ++  avg  l+G l+D+ GRkpv ++  ++  l  l++a s   + l+  R+l ++  
  MMETSP1137-20121227|543_1  19 LDLHLTDAQMLTTRTAIFAAWAVGSTLFGNLADRVGRKPVAIGAAILALLHLLGCAASTGFKSLICFRVLGGLSI 93 
                577788888889**********************************************************99864 PP

>> TIGR00880  2_A_01_02: multidrug resistance protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.1   2.1   3.1e-09   1.6e-06       5      66 ..      37      94 ..      33     105 .. 0.82
   2 ?   -1.9   0.2       1.4   7.4e+02     113     138 ..     140     165 ..     130     168 .. 0.56
   3 ?    1.5   0.4      0.12        63      68     101 ..     250     283 ..     242     308 .. 0.79
   4 ?    1.0   1.3      0.18        90     101     130 ..     338     367 ..     316     398 .. 0.72

  Alignments for each domain:
  == domain 1    score: 26.1 bits;  conditional E-value: 3.1e-09
  TIGR00880  5 agyAlgqlvvsplsglltdrvGrkpvllvglfifvlsqllfalssnitvliiarilqGfgaa 66
               a+ A+g    s l+g l+drvGrkpv ++  ++ +l  l +a+s+ + +li  r+l+G++ +
  MMETSP1137-20121227|543_1 37 AAWAVG----STLFGNLADRVGRKPVAIGAAILALLHLLGCAASTGFKSLICFRVLGGLSIG 94
               444444....555555666***************************************9765 PP

  == domain 2    score: -1.9 bits;  conditional E-value: 1.4
  TIGR00880 113 algwralflilallallafilllfll 138
                 l+wr+ + ++a++ +l + ++++l+
  MMETSP1137-20121227|543_1 140 LLSWRFELCAIAAMLALLAGASARLV 165
                45666655555554444444445555 PP

  == domain 3    score: 1.5 bits;  conditional E-value: 0.12
  TIGR00880  68 alvagaaliadiikeeersvalgllsagialgpi 101
                +  +g++ +a ++++ +r+  ++l++ ++a++++
  MMETSP1137-20121227|543_1 250 VGRSGGGAYAQLFSRAYRGTTIALALGFAAVSVV 283
                4556788899999999999999999999998876 PP

  == domain 4    score: 1.0 bits;  conditional E-value: 0.18
  TIGR00880 101 ilGpllGavlaqalgwralflilallalla 130
                  G ++  + a+a+++ra+f +++++ l+a
  MMETSP1137-20121227|543_1 338 AAGVMAALAAATAFNFRATFALASAGKLFA 367
                333333333446777788888888877765 PP

>> TIGR00893  2A0114: D-galactonate transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   3.2   1.4e-07   7.3e-05      22     108 ..      19     105 ..      14     191 .. 0.87
   2 ?   -3.8   4.2         2     1e+03     292     368 ..     273     348 ..     246     371 .. 0.68

  Alignments for each domain:
  == domain 1    score: 19.7 bits;  conditional E-value: 1.4e-07
  TIGR00893  22 edLglsaaqyglvfsafsigyvlfqlpggllldriGakktlavaivlWglftllqafatalvslivlRvllGlaEaplfPgiikiva 108
                 dL l++aq+ +  +a +++ +++  + g l dr+G k +   a++l  l +l  a+ t++ sli  Rvl Gl+ +++  g+++++ 
  MMETSP1137-20121227|543_1  19 LDLHLTDAQMLTTRTAIFAAWAVGSTLFGNLADRVGRKPVAIGAAILALLHLLGCAASTGFKSLICFRVLGGLSIGGMLIGFSLALE 105
                59**********************************99888888888777777788889*******************999998875 PP

  == domain 2    score: -3.8 bits;  conditional E-value: 2
  TIGR00893 292 aiiaglvlsllliatnlvaskiaalalvalaffgkglaailwavisdvlskeiagltgGlinllGnlagivgPivig 368
                 +++++++s++ +   l a +i   ++++++f++  l   +  +    +s+ ++g+ g++i l++ +ag+++++++ 
  MMETSP1137-20121227|543_1 273 LALGFAAVSVVYFSLTLQAGSIGSSVMLNVLFLSL-LDLPGYKLADFLSSQPAIGVRGASILLFAGAAGVMAALAAA 348
                33344445555555556666666666666666666.68889999999999999999999999999999988876543 PP

>> TIGR00711  efflux_EmrB: drug resistance MFS transporter, drug:H+ antiporter-2 (14 Spanner) (DHA2) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.6   3.6e-07   0.00018      38     113 ..      27     103 ..      15     109 .. 0.86

  Alignments for each domain:
  == domain 1    score: 18.2 bits;  conditional E-value: 3.6e-07
  TIGR00711  38 evqWviTsymvanaivIpltgwlakrlgerklflvsvlaFtlssllcgvannlelliifRviQgf.ggglliplses 113
                ++  + T+   a a+   l g la+r+g++ + + ++++  l  l c+ +  +++li fRv+ g+ +gg+li  s +
  MMETSP1137-20121227|543_1  27 QMLTTRTAIFAAWAVGSTLFGNLADRVGRKPVAIGAAILALLHLLGCAASTGFKSLICFRVLGGLsIGGMLIGFSLA 103
                455566788889999999**********************************************8468999988776 PP

>> TIGR01299  synapt_SV2: synaptic vesicle protein SV2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.7   1.2e-06   0.00063     196     273 ..      20      97 ..       6     110 .. 0.80
   2 ?   -0.9   0.0      0.11        57     434     466 ..     257     289 ..     248     294 .. 0.89

  Alignments for each domain:
  == domain 1    score: 15.5 bits;  conditional E-value: 1.2e-06
  TIGR01299 196 dlclsdsnkgllglivylgmmvgaflwggladklgrkqsllislsvnsvfafls.sfvqgygtfllcrllsgvgiggai 273
                dl l+d++     + ++    vg+ l+g lad++grk    i  ++ +++ +l  +   g+  ++  r+l g+ igg +
  MMETSP1137-20121227|543_1  20 DLHLTDAQMLTTRTAIFAAWAVGSTLFGNLADRVGRKPV-AIGAAILALLHLLGcAASTGFKSLICFRVLGGLSIGGML 97 
                677777777777778899999***************975.677777788777761556799998888*********975 PP

  == domain 2    score: -0.9 bits;  conditional E-value: 0.11
  TIGR01299 434 tflrcfsyevreitlkltivwftlsfsyyglsv 466
                ++ + fs  +r +t+ l   + ++s  y+ l++
  MMETSP1137-20121227|543_1 257 AYAQLFSRAYRGTTIALALGFAAVSVVYFSLTL 289
                67789************************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (400 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       228  (0.0555826); expected 82.0 (0.02)
Passed bias filter:                      120  (0.029254); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                         8  (0.00195027); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.41u 0.15s 00:00:00.55 Elapsed: 00:00:00.56
# Mc/sec: 942.78
//
Query:       MMETSP1137-20121227|544_1  [L=403]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.024   11.4   0.2      0.042   10.6   0.2    1.3  1  TIGR00033 aroC: chorismate synthase


Domain annotation for each model (and alignments):
>> TIGR00033  aroC: chorismate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.2     1e-05     0.042     195     227 ..     361     393 ..     356     396 .. 0.90

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 1e-05
  TIGR00033 195 dgdsvGgvvevvvsnvpvglGeplfdkldaela 227
                +g +vGgvv +vv++vpv  G+p+ d+ d+el+
  MMETSP1137-20121227|544_1 361 AGAAVGGVVPCVVTGVPVASGVPVPDSRDSELT 393
                5678*********************99999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (403 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       191  (0.0465627); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.30u 0.15s 00:00:00.44 Elapsed: 00:00:00.43
# Mc/sec: 1237.01
//
Query:       MMETSP1137-20121227|545_1  [L=128]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (128 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        37  (0.00901999); expected 82.0 (0.02)
Passed bias filter:                       32  (0.00780107); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.16s 00:00:00.32 Elapsed: 00:00:00.53
# Mc/sec: 318.77
//
Query:       MMETSP1137-20121227|546_1  [L=273]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.2e-98  327.0   0.0    4.7e-98  326.9   0.0    1.0  1  TIGR01393 lepA: GTP-binding protein LepA
     0.0036   13.3   0.0      0.025   10.5   0.0    2.0  1  TIGR00484 EF-G: translation elongation factor G


Domain annotation for each model (and alignments):
>> TIGR01393  lepA: GTP-binding protein LepA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  326.9   0.0  2.3e-101   4.7e-98     326     593 ..       2     270 ..       1     272 [. 0.99

  Alignments for each domain:
  == domain 1    score: 326.9 bits;  conditional E-value: 2.3e-101
  TIGR01393 326 ekesskalGfGfrcGflGllhleviqerlerefdldliataPsvvykvklkdgevievenPselpeeekieeveePyvkatiivpeeylgailelcqekrgvlkkleyldkervelvyelPlaeivldffdklksiskGyasldyelieyresdlvkldillngekvdalsvivhrdkaeekgrklveklkeliprqqfeiaiqaaigakiiaretikalrkdvlakcyGGditrkrkllekqkeGkkrlk.eiGkvevPqeaflavlk 593
                e+e s +lG G+rcGflGllh+ev+q+rl  e+ +d+++t+P+v  + +lkdg+v +v++P++lp+ +++++++eP+v atii+p+eylg ++ lc++  g+++++++l++erv l+y+lPlaei +df+d++k++s Gyasldye  + + +d+v l + +nge+v al+ iv r+k+ + g+++v+ lk  ++rq ++i iqa++g+ ++aret++a+rk+vlakcyGGd++rkrkll+kqkeGkkr   ++G+ve+P+ea+++vl 
  MMETSP1137-20121227|546_1   2 ENEHSPTLGRGLRCGFLGLLHMEVVQQRLLEEHGVDVLMTSPTVPLQATLKDGSVRNVNSPEALPDDKELASLTEPVVAATIITPAEYLGGLIALCESACGEQVEQTFLGPERVVLRYKLPLAEIATDFHDRMKTLSSGYASLDYEPSGSQPADVVALGLRVNGEPVAALTRIVRRNKSVALGKAMVATLKGEMQRQVYDIIIQATVGNSVVARETVRAVRKNVLAKCYGGDVSRKRKLLDKQKEGKKRANlTVGSVEIPHEAYVKVLT 270
                789******************************************************************************************************************************************************************************************************************************************************97589*************97 PP

>> TIGR00484  EF-G: translation elongation factor G
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.5   0.0   1.2e-05     0.025     539     667 ..      25     144 ..      13     159 .. 0.76

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 1.2e-05
  TIGR00484 539 avdkGleealesGvlaGyPvvdikvtlfdGsyhdvdsselafklaaslalkeavkkakPvllePimkvevevPeeylGdvlGdlsrrrg.liegseeresvkvvkaevPlsemf.GyatdlrsatqGraey 667
                 v++ l e+    vl+  P v +++tl dGs  +v+s e         al +  + a   l eP+++ ++ +P eylG ++   ++  g ++e +    + +v++ ++Pl+e+   +   +++ + G a+ 
  MMETSP1137-20121227|546_1  25 VVQQRLLEEHGVDVLMTSPTVPLQATLKDGSVRNVNSPE---------ALPDDKELA--SLTEPVVAATIITPAEYLGGLIALCESACGeQVEQTFLGPERVVLRYKLPLAEIAtDFHDRMKTLSSGYASL 144
                566666666667788999999999999999999999987.........566665555..589********************9999887368888888888999999999998524666666666666654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (273 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       102  (0.0248659); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.27u 0.14s 00:00:00.41 Elapsed: 00:00:00.40
# Mc/sec: 900.83
//
Query:       MMETSP1137-20121227|547_1  [L=383]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00039   17.2   0.1    0.00059   16.6   0.1    1.3  1  TIGR03466 HpnA: hopanoid-associated sugar epimerase
     0.0042   14.4   0.2     0.0089   13.4   0.0    1.6  2  TIGR03649 ergot_EASG: ergot alkaloid biosynthesis protein, AFUA_2G17970 family
  ------ inclusion threshold ------
      0.055   10.1   4.2       0.43    7.2   2.9    2.0  1  TIGR02823 oxido_YhdH: putative quinone oxidoreductase, YhdH/YhfP family


Domain annotation for each model (and alignments):
>> TIGR03466  HpnA: hopanoid-associated sugar epimerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.1   4.3e-07   0.00059       2     165 ..     120     280 ..     119     292 .. 0.70

  Alignments for each domain:
  == domain 1    score: 16.6 bits;  conditional E-value: 4.3e-07
  TIGR03466   2 kvlvtGatGFvGsavvrllleeGe.evrvlvrktsdrrnleeldvEive.Gdlkd.easlkkalkGcealfHvA..AdyrlwakdpeelykanvegtravleaAleagvervvytssvatlgvkedgkeadettp.sklekmiGhYkrskflAEqaveelaaeglpvviv 165
                +vlv GatG  G  v  +l+++G+ +v   vr+ ++++  ++ld+  ++  d+++  +++++al G++ ++     A  + +   + +    n  gt +++eaA  a++ + v  ss+ t g ++ g   +e++p   ++++ G     k++AE+a+++   +gl   iv
  MMETSP1137-20121227|547_1 120 TVLVAGATGKTGRLVCSALTAAGAvNVIGGVRDPTSSK-AKALDAKSLRhLDITEsVDQIAAALDGVDSIVCAVgfAGGNPFEMGKLAHAVDN-VGTCKLIEAASAAKISKFVMVSSILTNG-RAWG---QEKSPgFVITNAFGGVLDEKLVAERALKS---SGLXFTIV 280
                79********************9634555577665544.4788888665147765158899******99875431234444444444444444.599********************97766.3333...44444156678888888888888887653...45555555 PP

>> TIGR03649  ergot_EASG: ergot alkaloid biosynthesis protein, AFUA_2G17970 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.0   6.5e-06    0.0089       1     107 [.     120     234 ..     120     287 .. 0.83
   2 ?   -2.2   0.0      0.35   4.8e+02     162     189 ..     297     324 ..     290     329 .. 0.74

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 6.5e-06
  TIGR03649   1 tiLllgGtGkvasriarllaaas.vpllvasrssssaaledekavkFdwld.edtyenvfssddemekeelisavylvappvl.........dlasllikFidvavkkgvkrfvllsa 107
                t+L+ g tGk+++ + + l+aa+ v+++ + r+  s++ ++  a++  +ld +++ +++ +  d++++  ++ av +  ++ +         d++  + k i+ a++  +++fv++s+
  MMETSP1137-20121227|547_1 120 TVLVAGATGKTGRLVCSALTAAGaVNVIGGVRDPTSSKAKALDAKSLRHLDiTESVDQIAAALDGVDS--IVCAVGFAGGNPFemgklahavDNV-GTCKLIEAASAAKISKFVMVSS 234
                79*****************9998688888999999999999999999999955677777788888887..9999999888877455555332222.246899************9985 PP

  == domain 2    score: -2.2 bits;  conditional E-value: 0.35
  TIGR03649 162 AtsdgkiPfvsaeDiArvAvkaLtdksa 189
                A +      vs +++A v ++aL+++++
  MMETSP1137-20121227|547_1 297 AEDTLNSGEVSRANVASVCAEALVSSKS 324
                5555555568999999999999998654 PP

>> TIGR02823  oxido_YhdH: putative quinone oxidoreductase, YhdH/YhfP family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   2.9   0.00031      0.43     116     201 ..      90     173 ..      68     245 .. 0.75

  Alignments for each domain:
  == domain 1    score: 7.2 bits;  conditional E-value: 0.00031
  TIGR02823 116 slkeamilGtAGfTAaLsvealekagltpeegevlVtGAtGgVgslavalLsklGyevvavtgkkeeeeylkelGakevisreele 201
                s +ea++l  A + A L+ +  + a+++ + + vlV GAtG  g l  + L+++G   v    +  ++   k+l ak + + +  e
  MMETSP1137-20121227|547_1  90 SRREAAAL-AASLGASLAFTGANPAKAA-APKTVLVAGATGKTGRLVCSALTAAGAVNVIGGVRDPTSSKAKALDAKSLRHLDITE 173
                55666666.4677777777776665533.3358**********************9999988999999999999998876654433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (383 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       204  (0.0497318); expected 82.0 (0.02)
Passed bias filter:                      115  (0.0280351); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.31u 0.16s 00:00:00.47 Elapsed: 00:00:00.48
# Mc/sec: 1053.16
//
Query:       MMETSP1137-20121227|548_1  [L=389]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.2e-67  225.0   0.0    3.9e-67  224.7   0.0    1.1  1  TIGR01777 yfcH: TIGR01777 family protein
    9.3e-07   25.8   0.1    1.4e-06   25.2   0.0    1.2  1  TIGR03466 HpnA: hopanoid-associated sugar epimerase
    0.00015   18.9   0.0      0.034   11.1   0.0    2.4  2  TIGR02197 heptose_epim: ADP-glyceromanno-heptose 6-epimerase
    0.00056   17.1   0.1     0.0013   15.9   0.1    1.6  2  TIGR01746 Thioester-redct: thioester reductase domain
    0.00082   16.4   0.0       0.14    9.0   0.0    2.6  2  TIGR01181 dTDP_gluc_dehyt: dTDP-glucose 4,6-dehydratase
  ------ inclusion threshold ------
      0.012   13.4   0.1      0.023   12.5   0.1    1.5  1  TIGR01915 npdG: NADPH-dependent F420 reductase
      0.026   11.1   0.1      0.042   10.5   0.0    1.4  1  TIGR01179 galE: UDP-glucose 4-epimerase


Domain annotation for each model (and alignments):
>> TIGR01777  yfcH: TIGR01777 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  224.7   0.0   6.6e-70   3.9e-67       1     287 [.       3     291 ..       3     295 .. 0.91

  Alignments for each domain:
  == domain 1    score: 224.7 bits;  conditional E-value: 6.6e-70
  TIGR01777   1 vlitGgtGliGralveelekkghevviltrskekekeekkesa..kevaeeaeeealegvdavinLaGepiad.krwteerkkeileSRikttealvelikkakqkpkvlisasavgyYgeseekelteee.eeagddFlaklceeWEeaaqaaeklgvrvvllRtgivLgekGGalakllllfklglggklGsGrqwlsWihleDlvklilfaleneevsGvvNataPepvrnkefakalakalhrpallpvPklvlklllGeeaal..vlkgqrvlPeklleagFeFkyee 287
                vl++GgtG++G  lv+el k+ ++v++l rs+e+ ke    ++  +++  + ++  le+v av+nL+Ge++     wt++ + eil SR++t+++l+el++++++ +  l+sas+v++Y +s++ + + +   ++ d Fla++  +WE+aa+a  + +++ v+lR+g+vL+   Gal k+ l+f+lglgg+lG G+q++sW +l+D+v++i ++l++++++G++N++  +  r+ +fa++la+al rp+++p P+++l++llGe++a   +lk+ +v   +l+e+gF+++ ++
  MMETSP1137-20121227|548_1   3 VLVAGGTGMLGVPLVKELLKRRNTVIVLGRSEERVKEVFGXEVqiATWD-SLDAAILEDVSAVVNLCGENVGAgLWWTPTSQAEILASRVSTARKLAELVAQSRSSV-RLLSASGVSIYADSDSVQDEHTPlPAHPDSFLADVSIQWEAAARALLA-EAQCVFLRIGVVLAAGRGALGKMELPFRLGLGGRLGRGTQFMSWTSLADAVAAIVHILDRPALHGPFNIVGGR-ARQIDFATELASALWRPCFVPAPSFALHALLGESMANdlLLKSVNVKGTRLEESGFTWRDTD 291
                79*******************************9999875544003333.368889***************984679**************************9555.899********9887655555547778899*************99988.99********************************************************************975.6889*****************************998778*****************997655 PP

>> TIGR03466  HpnA: hopanoid-associated sugar epimerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.2   0.0   2.4e-09   1.4e-06       1     132 [.       1     132 [.       1     142 [. 0.80

  Alignments for each domain:
  == domain 1    score: 25.2 bits;  conditional E-value: 2.4e-09
  TIGR03466   1 kkvlvtGatGFvGsavvrllleeGeevrvlvrktsdrrnleeldvEiveGdlkdeaslkkalkGcealfHvAAdyrlw.ak.dpeelykanvegtravle.aAleagvervvytssvatlgvkedgkeadettps 132
                +kvlv G+tG +G  +v++ll++ ++v vl r++ + +++ + +v i++ d  d+a l++ ++ + +l        lw ++  ++e+ ++ v+ +r++ e  A+++   r++ +s v++ +  +d +  de+tp+
  MMETSP1137-20121227|548_1   1 MKVLVAGGTGMLGVPLVKELLKRRNTVIVLGRSEERVKEVFGXEVQIATWDSLDAAILED-VSAVVNLCGENVGAGLWwTPtSQAEILASRVSTARKLAElVAQSRSSVRLLSASGVSIYA-DSD-SVQDEHTPL 132
                69**************************************************9*998875.666666666555555651552456899999999999987347777778888888888877.333.356777665 PP

>> TIGR02197  heptose_epim: ADP-glyceromanno-heptose 6-epimerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.1   0.0   5.7e-05     0.034       1     128 [.       3     129 ..       3     139 .. 0.70
   2 !    5.2   0.0    0.0037       2.2     209     249 ..     193     233 ..     182     247 .. 0.84

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 5.7e-05
  TIGR02197   1 iivTGgaGfiGsnlvaalnekgetdilvvDklrkgekllnlkdeeiadyidkeellerlekeelkkveavf..HegAisdTteldgellmenNyeyskellelcaek..evkliYASSAavYGdseeefree 128
                ++v Gg G++G  lv++l ++  + ++v+   r++e+++++ + e++    ++     le+  ++ v  +     gA    t + +  ++ + +++ ++l el a++  +v+l+ AS  ++Y ds + ++e+
  MMETSP1137-20121227|548_1   3 VLVAGGTGMLGVPLVKELLKRR-NTVIVLG--RSEERVKEVFGXEVQIATWDSLDAAILED--VSAVVNLCgeNVGAGLWWTPTSQAEILASRVSTARKLAELVAQSrsSVRLLSASGVSIYADSDSVQDEH 129
                69****************9998.5566665..45568888877776544444444444443..233333321134777777888899999999999999999987752268899999999999887777665 PP

  == domain 2    score: 5.2 bits;  conditional E-value: 0.0037
  TIGR02197 209 dGeqlRDFvyvkDvvkvnllllekkeksGifnvGtgkarsf 249
                 G q   ++++ D v +++++l++++  G fn+  g+ar+ 
  MMETSP1137-20121227|548_1 193 RGTQFMSWTSLADAVAAIVHILDRPALHGPFNIVGGRARQI 233
                577777889999**************************984 PP

>> TIGR01746  Thioester-redct: thioester reductase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.1   2.2e-06    0.0013       1      36 [.       2      35 ..       2      69 .. 0.80
   2 ?   -3.4   0.0       1.6   9.4e+02     231     250 ..     198     217 ..     194     234 .. 0.65

  Alignments for each domain:
  == domain 1    score: 15.9 bits;  conditional E-value: 2.2e-06
  TIGR01746  1 tvlLTGAtGfLGaylleeLlrrsteakviClVRaks 36
               +vl+ G tG LG+ l++eLl+r+   +vi l R+++
  MMETSP1137-20121227|548_1  2 KVLVAGGTGMLGVPLVKELLKRR--NTVIVLGRSEE 35
               69********************6..57888877665 PP

  == domain 2    score: -3.4 bits;  conditional E-value: 1.6
  TIGR01746 231 eellpvdfvaraivalasql 250
                + +++ +++++aiv++  ++
  MMETSP1137-20121227|548_1 198 MSWTSLADAVAAIVHILDRP 217
                44666666666666666655 PP

>> TIGR01181  dTDP_gluc_dehyt: dTDP-glucose 4,6-dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.0   0.0   0.00024      0.14       1     135 [.       2     125 ..       2     142 .. 0.66
   2 !    4.5   0.0    0.0059       3.4     209     249 ..     192     232 ..     189     245 .. 0.90

  Alignments for each domain:
  == domain 1    score: 9.0 bits;  conditional E-value: 0.00024
  TIGR01181   1 klLvtGGaGfiGsnfvryileetpdaevvvlDkLtyagnkenlkdledeerysfvkgdiadrelverllkeedvdavvnfaaeshvDrsi....sepeafietnvvGtytlleavrkelkevrllhistDevyGdlekd 135
                k+Lv+GG+G++G  +v+ +l++   ++v+vl +      +e +k++         +++ia  + ++  + e dv avvn+  e      +    ++ ++ + + v  + +l e v ++ ++vrll  s   +y d  + 
  MMETSP1137-20121227|548_1   2 KVLVAGGTGMLGVPLVKELLKRR--NTVIVLGR-----SEERVKEVFG------XEVQIATWDSLDAAILE-DVSAVVNLCGENV-GAGLwwtpTSQAEILASRVSTARKLAELVAQSRSSVRLLSASGVSIYADSDSV 125
                68*******************88..45788743.....4566666665......45666666667666653.4567888877753.33221111445566777777777778877777777888777777777775544 PP

  == domain 2    score: 4.5 bits;  conditional E-value: 0.0059
  TIGR01181 209 GdGqqvrDwlyveDhcraielvlekgrvgevyniggeeert 249
                G G+q   w    D + ai  +l++      +ni g+++r+
  MMETSP1137-20121227|548_1 192 GRGTQFMSWTSLADAVAAIVHILDRPALHGPFNIVGGRARQ 232
                89********************************9998875 PP

>> TIGR01915  npdG: NADPH-dependent F420 reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.1   3.9e-05     0.023       1      40 [.       1      40 [.       1      65 [. 0.89

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 3.9e-05
  TIGR01915  1 lkiavlGGtGdqGkGlalRlAkageeiiiGsRdkekAeea 40
               +k+ v GGtG  G  l+  l k  + +i+  R++e+ +e 
  MMETSP1137-20121227|548_1  1 MKVLVAGGTGMLGVPLVKELLKRRNTVIVLGRSEERVKEV 40
               899*******************************999885 PP

>> TIGR01179  galE: UDP-glucose 4-epimerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   7.2e-05     0.042       1      39 [.       2      40 ..       2     136 .. 0.82

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 7.2e-05
  TIGR01179  1 kiLvtGgaGyiGshvvrqllekgkevvvlDnlskgskea 39
               k+Lv+Gg+G +G   v++ll++   v+vl    +  ke+
  MMETSP1137-20121227|548_1  2 KVLVAGGTGMLGVPLVKELLKRRNTVIVLGRSEERVKEV 40
               79**************************97655554444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (389 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       133  (0.0324232); expected 82.0 (0.02)
Passed bias filter:                      109  (0.0265724); expected 82.0 (0.02)
Passed Vit filter:                        19  (0.00463189); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.36u 0.15s 00:00:00.51 Elapsed: 00:00:00.41
# Mc/sec: 1252.29
//
Query:       MMETSP1137-20121227|551_1  [L=237]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (237 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       134  (0.032667); expected 82.0 (0.02)
Passed bias filter:                      118  (0.0287665); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.18s 00:00:00.42 Elapsed: 00:00:00.32
# Mc/sec: 977.54
//
Query:       MMETSP1137-20121227|552_1  [L=106]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (106 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       159  (0.0387616); expected 82.0 (0.02)
Passed bias filter:                      117  (0.0285227); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.12s 00:00:00.27 Elapsed: 00:00:00.31
# Mc/sec: 451.32
//
Query:       MMETSP1137-20121227|553_1  [L=333]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (333 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        86  (0.0209654); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.14s 00:00:00.41 Elapsed: 00:00:00.25
# Mc/sec: 1758.09
//
Query:       MMETSP1137-20121227|554_1  [L=337]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.6e-11   41.0   0.0      4e-11   40.4   0.0    1.3  1  TIGR03674 fen_arch: flap structure-specific endonuclease
    0.00012   18.4   0.0    0.00024   17.4   0.0    1.4  2  TIGR00600 rad2: DNA excision repair protein (rad2)


Domain annotation for each model (and alignments):
>> TIGR03674  fen_arch: flap structure-specific endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.4   0.0     2e-14     4e-11     110     256 ..      52     201 ..      41     231 .. 0.85

  Alignments for each domain:
  == domain 1    score: 40.4 bits;  conditional E-value: 2e-14
  TIGR03674 110 ekgdleeaakyakrsarldeeivedskkLlellgipyvqApsegEAqaaymvkkgdvdavgsqDYDsLlfGaprlvrnltisgkrklpkknvyvev..kpElieLeevLkelgitreqLi.diailvGTDynegvkgiGpkkalklikel 256
                ++g +eeaa+ ak +  ++ ++v +  + l+++gi ++  p e++ q +++v++g++ a++++D D L +G pr + +l  +g+ +  + + +  v  +   +   +   e++  r  L  d+ il G +y + ++ +G+ +a + +++ 
  MMETSP1137-20121227|554_1  52 SAGAAEEAAESAKGAVGVSPRMVRTLIRRLRIMGIRFIVSPYEADPQLSFLVRHGHAAAAVTEDSDLLAYGCPRCLFKLDDNGNARALEFEDVQFVqrRENHLFAGSFXGEWEAWRGGLFaDMCILAGCEYINSLPQVGVITAHQSLRDA 201
                6789999*************************************************************************99987765544443341034445556677889998888753899*******999*****99999988874 PP

>> TIGR00600  rad2: DNA excision repair protein (rad2)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.0   1.2e-07   0.00024     772     829 ..      67     124 ..      55     133 .. 0.88
   2 ?   -2.9   0.0      0.16   3.2e+02     865     884 ..     175     194 ..     171     200 .. 0.85

  Alignments for each domain:
  == domain 1    score: 17.4 bits;  conditional E-value: 1.2e-07
  TIGR00600 772 deVTgqmikEsqELLrlFGiPYivAPmEAEAqCakLdlldlvdGiiTDDSDvfLFGar 829
                  V   m++     Lr  Gi +iv P EA+ q + L +       +T+DSD+  +G  
  MMETSP1137-20121227|554_1  67 VGVSPRMVRTLIRRLRIMGIRFIVSPYEADPQLSFLVRHGHAAAAVTEDSDLLAYGCP 124
                56777888888888**************************************999975 PP

  == domain 2    score: -2.9 bits;  conditional E-value: 0.16
  TIGR00600 865 AyLLGSDYTeGlptvGpVsa 884
                  L G +Y + lp+vG+++a
  MMETSP1137-20121227|554_1 175 CILAGCEYINSLPQVGVITA 194
                5688**************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (337 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       127  (0.0309605); expected 82.0 (0.02)
Passed bias filter:                      103  (0.0251097); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.28u 0.16s 00:00:00.44 Elapsed: 00:00:00.91
# Mc/sec: 488.79
//
Query:       MMETSP1137-20121227|555_1  [L=137]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (137 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        22  (0.00536324); expected 82.0 (0.02)
Passed bias filter:                       22  (0.00536324); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.15s 00:00:00.32 Elapsed: 00:00:00.26
# Mc/sec: 695.48
//
Query:       MMETSP1137-20121227|556_1  [L=155]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (155 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        72  (0.0175524); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.15s 00:00:00.31 Elapsed: 00:00:00.34
# Mc/sec: 601.72
//
Query:       MMETSP1137-20121227|557_1  [L=762]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.7e-32  108.9   0.4    6.3e-28   95.2   0.0    2.1  2  TIGR02956 TMAO_torS: TMAO reductase sytem sensor TorS
    2.5e-15   54.2   0.1    1.7e-12   44.8   0.0    2.6  3  TIGR02966 phoR_proteo: phosphate regulon sensor kinase PhoR
    1.2e-12   45.1   0.0    1.8e-12   44.5   0.0    1.2  1  TIGR02916 PEP_his_kin: putative PEP-CTERM system histidine kinase
    1.2e-09   35.0   0.7    3.9e-09   33.3   0.0    1.8  2  TIGR02938 nifL_nitrog: nitrogen fixation negative regulator NifL
    6.8e-09   33.0   0.2      3e-08   30.9   0.0    1.9  2  TIGR01386 cztS_silS_copS: heavy metal sensor kinase
      1e-05   21.9   0.0    3.8e-05   20.0   0.0    1.8  2  TIGR03785 marine_sort_HK: proteobacterial dedicated sortase system histidine kinase


Domain annotation for each model (and alignments):
>> TIGR02956  TMAO_torS: TMAO reductase sytem sensor TorS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.9   0.7   2.6e-05     0.018     423     481 ..     278     336 ..     261     348 .. 0.87
   2 !   95.2   0.0   9.2e-31   6.3e-28     512     692 ..     462     646 ..     449     657 .. 0.91

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 2.6e-05
  TIGR02956 423 esLeelvaqrTqeLketnerLneEvlnHakAraeAeeAnrAKSaFLAtmSHEiRTPlnG 481
                +s+e+ ++ + qe ++t + +++E  + +  r   e+A + + ++L +m H+  TP+  
  MMETSP1137-20121227|557_1 278 NSMEQRMHAQSQEAAATQRAIQSELRAKEAERLSNEQALQMRNKYLGAMCHDFGTPVAV 336
                689*****************************************************865 PP

  == domain 2    score: 95.2 bits;  conditional E-value: 9.2e-31
  TIGR02956 512 LldiL.nDiLDySkiEaG.hlsiserafdlskLledvlhlmesraqekgiqLsleidedlpevlqgDlsrirQvliNlvgNaiKFTdrGsvvlrvslndds.llfeVeDtGvGiaeeeqetlFkaftqae.grkksgGTGLGLAiskrlveamdgelsveSelgkGScFafelplergkkaeksa 692
                Lld+     L y k+EaG ++  s + f++ +L+e+v  + +   ++  ++ + +i   +p++ + D s +  vliNl +Na+K T+ Gsv+l+v  ++   l++eV DtG G++     +lF+aft a+    ++  TGLGL  sk+lv +++ge++   ++  G  F +e+p+e++  ++  a
  MMETSP1137-20121227|557_1 462 LLDVTrHKALAYAKLEAGrEMVPSLKVFNVAELIEKVASVARDTGKSDRVEVRHHIAPGTPATAKSDASWLFMVLINLASNAMKHTQIGSVTLSVIPAGRGrLRVEVRDTGSGLPASFVPSLFQAFTSANtHNSSVESTGLGLYHSKQLVTILNGEIGYVPNEPTGCVFFIEVPIEEAPRNDANA 646
                55554135799*******8899999*********************************************************************99877666****************************77778899**************************************997766555 PP

>> TIGR02966  phoR_proteo: phosphate regulon sensor kinase PhoR
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.1       0.1        71      18      59 ..     264     306 ..     253     315 .. 0.73
   2 !    5.1   0.0     0.003       2.1     109     141 ..     314     346 ..     310     357 .. 0.85
   3 !   44.8   0.0   2.6e-15   1.7e-12     172     329 ..     471     630 ..     449     634 .. 0.83

  Alignments for each domain:
  == domain 1    score: 0.1 bits;  conditional E-value: 0.1
  TIGR02966  18 avvvldeeeqiewvNkaaekllglkapkdl.gqkisnlirspe 59 
                  vv +e+++i+  N++ +++   ++++ + ++ i++ +r +e
  MMETSP1137-20121227|557_1 264 VSVVYNERQTIHVYNSMEQRMHAQSQEAAAtQRAIQSELRAKE 306
                4588999999*******99999888877661445666666655 PP

  == domain 2    score: 5.1 bits;  conditional E-value: 0.003
  TIGR02966 109 rleqmRrdFvanvsHELrtPLtvlkGyletlee 141
                +  qmR++++  + H+  tP++vlk  l +l+ 
  MMETSP1137-20121227|557_1 314 QALQMRNKYLGAMCHDFGTPVAVLKMLLSLLRG 346
                6679********************988887765 PP

  == domain 3    score: 44.8 bits;  conditional E-value: 2.6e-15
  TIGR02966 172 ltLsrlEsaakekee.ekvdvaelleelkkeaealseekehqielev..daavkvkgdeeeLrsalsNLveNAikytpeggeitvrweeeeeg.aelsvkDtGeGIaaehlprltERFYRvdksrsretgGtGLGLaIvkHvlerheaeLeieSelgkGstF 329
                l+ ++lE+ ++   + + ++vael+e++++ a+ + ++ +++++ ++   + ++ k+d + L  +l NL +NA+k+t+ g ++t+++  + +g  +++v+DtG G++a+ +p l+  F   ++ +s+    tGLGL   k  ++  ++e+    ++ +G +F
  MMETSP1137-20121227|557_1 471 LAYAKLEAGREMVPSlKVFNVAELIEKVASVARDTGKSDRVEVRHHIapGTPATAKSDASWLFMVLINLASNAMKHTQIG-SVTLSVIPAGRGrLRVEVRDTGSGLPASFVPSLFQAFTSANTHNSSV-ESTGLGLYHSKQLVTILNGEIGYVPNEPTGCVF 630
                66789999877655416679***************99999***999943455667778889****************986.5777776665555*************************999998865.57*****99999998888888766666666666 PP

>> TIGR02916  PEP_his_kin: putative PEP-CTERM system histidine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.5   0.0   2.6e-15   1.8e-12     529     679 .]     474     635 ..     458     635 .. 0.80

  Alignments for each domain:
  == domain 1    score: 44.5 bits;  conditional E-value: 2.6e-15
  TIGR02916 529 aqLrekgl.eeekkavdlvdllervieskraqkp..rievsvdkd....levradrerlervlghLvqNAleATeeeGkVkirverek.eaavieieDsGqGmseeFirerLFkPFdttKk.....aGmGiGvyesreyveelGGeieveStpgkGtiftlvlP 679
                a+L  +++   + k++++++l+e+v   +r +++  r+ev  +++     +++ d + l  vl +L+ NA+  T+  G+V+++v   + +++++e+ D+G+G++ +F+   LF+ F ++ +        G+G+y s+++v  l Gei    ++  G +f + +P
  MMETSP1137-20121227|557_1 474 AKLEAGREmVPSLKVFNVAELIEKVASVARDTGKsdRVEVRHHIApgtpATAKSDASWLFMVLINLASNAMKHTQI-GSVTLSVIPAGrGRLRVEVRDTGSGLPASFV-PSLFQAFTSANThnssvESTGLGLYHSKQLVTILNGEIGYVPNEPTGCVFFIEVP 635
                56666666556678999******99887766655115555443334445789999******************975.******9988889*****************6.68*****9876532233568*******************9999999999988776 PP

>> TIGR02938  nifL_nitrog: nitrogen fixation negative regulator NifL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.3      0.11        78     215     304 ..     260     347 ..     255     363 .. 0.68
   2 !   33.3   0.0   5.8e-12   3.9e-09     342     493 ..     485     635 ..     439     636 .. 0.86

  Alignments for each domain:
  == domain 1    score: -0.6 bits;  conditional E-value: 0.11
  TIGR02938 215 lsvagrvirieeesadsffaaaekryllltiddiselrkkqedarlsalkallaeeeklealretlsaaihrlqgPlnlisaaisvlerr 304
                l+ + +v+  e ++++++ +  e+r      +  + +r  q + r++  + l ++e+ l+     l a  h +  P+ ++   +s+l  r
  MMETSP1137-20121227|557_1 260 LATTVSVVYNERQTIHVYNS-MEQRMHAQSQEAAATQRAIQSELRAKEAERL-SNEQALQMRNKYLGAMCHDFGTPVAVLKMLLSLLRGR 347
                55666677777777777754.5666666677777777888877777766554.4555555555567788899999*99999999998776 PP

  == domain 2    score: 33.3 bits;  conditional E-value: 5.8e-12
  TIGR02938 342 avvpvnlnqvlrdvitllterllaaGivvdwqPaavlPavlGsesrlrslfkalvdnaieamaqkqvkrrelsistaveddlirveiedsGPGiPadlrlkvfePffttka..ssrkhvGmGlavaqeivakhaGlidvdddyreGcrivvele 493
                + +  n+ +++ +v  ++ +   +  + v    a+  Pa   s+     lf  l++ a +am++ q+    ls+  a ++ l rve+ d+G G+Pa ++   f+ f ++ +  ss +  G+Gl   +++v+  +G i   ++   Gc   +e++
  MMETSP1137-20121227|557_1 485 SLKVFNVAELIEKVASVARDTGKSDRVEVRHHIAPGTPATAKSDA--SWLFMVLINLASNAMKHTQIGSVTLSVIPAGRGRL-RVEVRDTGSGLPASFVPSLFQAFTSANThnSSVESTGLGLYHSKQLVTILNGEIGYVPNEPTGCVFFIEVP 635
                556678888888888888888888888888888888888766555..579999************************99985.9**********************9876511568899********************9*******9999986 PP

>> TIGR01386  cztS_silS_copS: heavy metal sensor kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.2      0.16   1.1e+02      19      57 ..     268     305 ..     250     331 .. 0.54
   2 !   30.9   0.0   4.4e-11     3e-08     344     444 ..     521     621 ..     475     635 .. 0.80

  Alignments for each domain:
  == domain 1    score: -0.6 bits;  conditional E-value: 0.16
  TIGR01386  19 vlallglilyssleeeleerdreelsakleavrelLree 57 
                     ++ +y s+e++++++++e+ + +  a+++ Lr +
  MMETSP1137-20121227|557_1 268 YNERQTIHVYNSMEQRMHAQSQEAAA-TQRAIQSELRAK 305
                22345666777788888777776544.344455555544 PP

  == domain 2    score: 30.9 bits;  conditional E-value: 4.4e-11
  TIGR01386 344 e.aevegdaqlfrRalsNLlsNAlrytpegstievrverradevevsventgkgipeeelsrlFdRFYRvdaarsnseegtGLGLaIvrsiveaHgGeveae 444
                  a++++da  +  +l NL sNA+++t  gs +   +   ++ ++v+v +tg+g+p+   + lF  F  ++   + s e+tGLGL   + +v +  Ge+   
  MMETSP1137-20121227|557_1 521 TpATAKSDASWLFMVLINLASNAMKHTQIGSVTLSVIPAGRGRLRVEVRDTGSGLPASFVPSLFQAFTSANTH-NSSVESTGLGLYHSKQLVTILNGEIGYV 621
                34889999999999*****************99888999999************************9766654.556777*****99999998888888655 PP

>> TIGR03785  marine_sort_HK: proteobacterial dedicated sortase system histidine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0      0.14        96     481     511 ..     319     345 ..     279     354 .. 0.80
   2 !   20.0   0.0   5.6e-08   3.8e-05     556     703 .]     487     635 ..     464     635 .. 0.83

  Alignments for each domain:
  == domain 1    score: -1.2 bits;  conditional E-value: 0.14
  TIGR03785 481 YteYLenlssrLsHElrTPvAvVrsSLenLe 511
                 ++YL  +     H+  TPvAv +  L  L 
  MMETSP1137-20121227|557_1 319 RNKYLGAM----CHDFGTPVAVLKMLLSLLR 345
                55666555....6999999999998877765 PP

  == domain 2    score: 20.0 bits;  conditional E-value: 5.6e-08
  TIGR03785 556 edfdlsevlselvqgYqqlyeeqrfelei...eeedlvlrgspellaQllDKlvdNaieFskedglIevslkekkkealltveNeGpplPedlkeklFdsmvSvRaqkaqeqpHLGlGLyIvrliadfHqgeikaeNraqedgvvfevslp 703
                + f+++e++ ++ +  +++ ++ r+e+     + ++ +++  +  l  +l  l +Na+  ++ +++    + +   +  ++v+  G+ lP+    +lF+++ S  ++++   +  GlGLy ++ ++   +gei    + +++g vf +++p
  MMETSP1137-20121227|557_1 487 KVFNVAELIEKVASVARDTGKSDRVEVRHhiaPGTPATAKSDASWLFMVLINLASNAMKHTQIGSVTLSVIPAGRGRLRVEVRDTGSGLPASFVPSLFQAFTSANTHNSSV-ESTGLGLYHSKQLVTILNGEIGYVPN-EPTGCVFFIEVP 635
                56899999999999999999999999986112456679999999*****************998876555667778889*************************9655555.599*********99999999964332.335777777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (762 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       201  (0.0490005); expected 82.0 (0.02)
Passed bias filter:                      108  (0.0263286); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.59u 0.17s 00:00:00.76 Elapsed: 00:00:00.52
# Mc/sec: 1934.15
//
Query:       MMETSP1137-20121227|558_1  [L=103]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (103 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        69  (0.0168211); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.50
# Mc/sec: 271.90
//
Query:       MMETSP1137-20121227|559_1  [L=737]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   1.2e-167  557.1   0.0   4.9e-126  419.7   0.0    2.1  2  TIGR00418 thrS: threonine--tRNA ligase
    1.1e-09   35.3   0.0    0.00045   16.7   0.0    3.0  3  TIGR00389 glyS_dimeric: glycine--tRNA ligase
    1.6e-08   31.8   0.0      4e-05   20.6   0.0    2.2  2  TIGR00442 hisS: histidine--tRNA ligase
    3.4e-08   30.7   0.0     0.0025   14.6   0.0    2.2  2  TIGR00408 proS_fam_I: proline--tRNA ligase
    3.6e-07   27.3   0.0    1.9e-05   21.5   0.0    2.1  2  TIGR00409 proS_fam_II: proline--tRNA ligase


Domain annotation for each model (and alignments):
>> TIGR00418  thrS: threonine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  135.9   0.0   5.4e-43   4.4e-40       1     187 [.     193     377 ..     193     379 .. 0.94
   2 !  419.7   0.0  5.9e-129  4.9e-126     225     559 ..     379     727 ..     378     732 .. 0.94

  Alignments for each domain:
  == domain 1    score: 135.9 bits;  conditional E-value: 5.4e-43
  TIGR00418   1 rhsiahllaeavkklyleeklavgpvvedgfyydvev.ekelaeedlekiekelkelakkklpvaklsvsleeakeafkvleklklelldeieeeeekvtvyeqgkafvdlckgphlselsrikafklekvagaywlgdekneelqriygiafekkkeLkeylkakeeakkrdHrklgkeleLfsfee 187
                +hs+ah+l+ea+ +l  +++l+ gp++++gf+yd  + ++++  e  +++ek++ ++ ++k+++++  +++++a+++f+ ++++kl+++ ++ +++  +t y++g  fvdlc+gphl++++rikaf+ +k+++a wlg++ n+elqr+ygi+f +kke++e+++++eea+krdHr +g ++eLf f+e
  MMETSP1137-20121227|559_1 193 WHSSAHILGEALESL-YSAQLTHGPATDTGFFYDSFLgKNSFRPEMSDEVEKKVTKICNEKQEFERVVITKSDAEQLFA-NNPFKLAMIRSKLPDGCVTTAYRCGP-FVDLCRGPHLPNTGRIKAFAVTKTSAALWLGKQGNDELQRLYGITFPDKKEFQEWKHFQEEAAKRDHRVIGLKQELFFFDE 377
                79********96555.579************999666266777777899******************************.**************************.******************************************************************************996 PP

  == domain 2    score: 419.7 bits;  conditional E-value: 5.9e-129
  TIGR00418 225 tPiladlelweisghldkykermfrfkeeeekelvlkpmnCpghilifksslrsyrdLPlrlaelgvvhRyEksGeLvGLkRvRgftldDaHifctedQikeEiknalrliqkvlkklglseekvelstrdpedkyigedeewekaeakleealkelev....eyeieegeaafygpKidfaikdaLkreiqlaTvQlDfelperfdltyvded..............ekekrPviiHrailGsieRfiaiLlEkaagelPlwLaPvQvrvipvsekhldyakkvaeklkkegirvdvddrneklgkkiReaqkekipyvlvvGdkEveeeavtvRerkeekkekmsleelle 559
                +P++++++lw++sgh++kyke+mf     e +e+ lkpmnCpgh+l+fk++ rsyr+LP+r+a++gv+hR+E sG+L+GL+RvR+f++dDaHifc  +Qik+E+  +l++i++v++ lg+  ++++lst+ pe   +g+   we+ae  ++eal+e++     ++  ++g++afygpKid+++ daLkr++q+aTvQlDf  p rfdl+y++                 + +rPv++Hra+lGs+eR+iaiL+E++ag++P+wL+P Q  v+pvs+ + +ya+kv+ k++++g ++d d +n +l+k++Re q ++++++lvvG  E e+eav+vR+r++e +   s+eell 
  MMETSP1137-20121227|559_1 379 SPNMYNMNLWHTSGHAAKYKENMFC-LDIEGQEFGLKPMNCPGHCLMFKHRPRSYRELPIRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCMVSQIKQEVRGCLEMIKTVYDWLGMD-FALKLSTK-PEF-ALGDAAVWETAEGYMAEALDEFQQicgkTWSLNPGDGAFYGPKIDVQVFDALKRPHQCATVQLDFVQPMRFDLKYMAGAsaskdgkepskedeASFERPVMVHRAVLGSVERMIAILTEHFAGKWPFWLSPRQCLVVPVSKVYCEYAEKVKAKIHAAGYYADADLSNRTLNKMVREGQLSQYNFILVVGGDEQEKEAVNVRTRDNEVQGVKSIEELLS 727
                7***********************6.56667*****************************************************************************************8.********.974.59******************98642233799********************************************97554555677676654445589**********************************************************************************************************99999889999876 PP

>> TIGR00389  glyS_dimeric: glycine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.0     0.022        18      62      85 ..     379     402 ..     361     412 .. 0.85
   2 !   13.3   0.0   5.8e-06    0.0047     159     221 ..     413     475 ..     405     493 .. 0.81
   3 !   16.7   0.0   5.5e-07   0.00045     465     563 ..     634     731 ..     629     733 .. 0.92

  Alignments for each domain:
  == domain 1    score: 1.5 bits;  conditional E-value: 0.022
  TIGR00389  62 spiltpeevlkasGHvdkFtDalv 85 
                sp + + +++++sGH++k+++ + 
  MMETSP1137-20121227|559_1 379 SPNMYNMNLWHTSGHAAKYKENMF 402
                67889999***********99885 PP

  == domain 2    score: 13.3 bits;  conditional E-value: 5.8e-06
  TIGR00389 159 lRPEtAqGiFinFkkllefkreklPFgvaqiGksfRnEispr.qgllRvrEFeqaEiefFvdPe 221
                l+P    G  + Fk+  ++  ++lP  +a++G  +RnE+s    gl Rvr F+q +  +F+   
  MMETSP1137-20121227|559_1 413 LKPMNCPGHCLMFKHRPRSY-RELPIRMADFGVLHRNELSGAlTGLTRVRRFQQDDAHIFCMVS 475
                56666667777777766555.57****************96538****************9764 PP

  == domain 3    score: 16.7 bits;  conditional E-value: 5.5e-07
  TIGR00389 465 lkpkvaPikvlvlplvnkeelkeiakeiakaLrkeeiiikyddsgsiGkrYaraDeiG.tpfavtiDfetleDetvtlReRdslkqvRvkieelvsalkk 563
                 +++++P + lv+p+++     e a++++ ++   +++++ d s+    +  r+ ++   +f + +  +  e e+v +R Rd+  q   +ieel s++++
  MMETSP1137-20121227|559_1 634 WPFWLSPRQCLVVPVSKV--YCEYAEKVKAKIHAAGYYADADLSNRTLNKMVREGQLSqYNFILVVGGDEQEKEAVNVRTRDNEVQGVKSIEELLSMFAT 731
                6899***********998..99***********************988888888888726899********************************99976 PP

>> TIGR00442  hisS: histidine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.8   0.0   0.00018      0.15      58     161 ..     397     505 ..     367     536 .. 0.81
   2 !   20.6   0.0   4.8e-08     4e-05     305     399 ..     619     715 ..     617     721 .. 0.86

  Alignments for each domain:
  == domain 1    score: 8.8 bits;  conditional E-value: 0.00018
  TIGR00442  58 vekemYsfedkggrslaLRpelTapvvRavvenklelkk.pfklyyigpvFRyErpqk....GRyRqFhQldvevvGses.pladae.iialaaelleelglkevtleins 161
                 +++m+   d +g++++L+p    + + ++  + +++++ p+++  +g + R+E   +     R+R F Q d+ ++   s +++++   +++++++++ lg+ ++ l++++
  MMETSP1137-20121227|559_1 397 YKENMFC-LDIEGQEFGLKPMNCPGHCLMFKHRPRSYRElPIRMADFGVLHRNELSGAltglTRVRRFQQDDAHIFCMVSqIKQEVRgCLEMIKTVYDWLGM-DFALKLST 505
                5677774.466779999999999998888877776666669*************987655448*************9988458888636799*********9.99999875 PP

  == domain 2    score: 20.6 bits;  conditional E-value: 4.8e-08
  TIGR00442 305 ieRllllleee..glleeekkkadvlvvaldeeaeaealklaeklrkagirvevdlegkklkkqlkyadkkgakfvvilgedelekgkvtlkdletg 399
                +eR++++l e+  g+++   +  ++lvv++++ + ++a k+ +k+ +ag+ ++ dl+++ l+k +++ + ++++f++++g de ek+ v+++  +++
  MMETSP1137-20121227|559_1 619 VERMIAILTEHfaGKWPFWLSPRQCLVVPVSKVYCEYAEKVKAKIHAAGYYADADLSNRTLNKMVREGQLSQYNFILVVGGDEQEKEAVNVRTRDNE 715
                5777777765411444446788899******************************************************************987765 PP

>> TIGR00408  proS_fam_I: proline--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.0   4.9e-06     0.004     110     214 ..     421     525 ..     408     535 .. 0.79
   2 !   14.6   0.0   3.1e-06    0.0025     252     380 ..     614     732 ..     580     737 .] 0.83

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 4.9e-06
  TIGR00408 110 lynlykkwvksyrdLPlklnqivnvfRyEkkht.rPllRtrEflfkEaHtlhataeeaeeevlkildlYkelieelLaiPvlvgrksekekFa.Gaeytv.aieaimp 214
                 + ++k   +syr+LP+++  +    R E   +   l R+r f   +aH ++   ++ ++ev   l++ k +++  L++   + + s k  Fa G +  + + e++m 
  MMETSP1137-20121227|559_1 421 HCLMFKHRPRSYRELPIRMADFGVLHRNELSGAlTGLTRVRRFQQDDAH-IFCMVSQIKQEVRGCLEMIKTVYD-WLGMDFAL-KLSTKPEFAlGDAAVWeTAEGYMA 525
                689**************************986526899******99999.89999******************9.99987554.445555565232222236666665 PP

  == domain 2    score: 14.6 bits;  conditional E-value: 3.1e-06
  TIGR00408 252 tsyGlstRvigaliliHsDdkGLvlPpkvapiqvvvipiifkkkenkkvlelarkveekLkkleiRvelderdnrpGkkfskaElkGiPlrlevgpkdieknavvvlrRdekkKvevsldeleekvkel 380
                   G  +R+i+ l    ++ +    P+ ++p q  v+p  +     k   e+a+kv+ k++++++ +  d +++++ k   ++ l    + l vg  ++ek+av+v +Rd++ + + s++el + +  l
  MMETSP1137-20121227|559_1 614 AVLGSVERMIAIL----TEHFAGKWPFWLSPRQCLVVP--VS----KVYCEYAEKVKAKIHAAGYYADADLSNRTLNKMVREGQLSQYNFILVVGGDEQEKEAVNVRTRDNEVQGVKSIEELLSMFATL 732
                5555555555433....3444445799***********..33....4458************************************************************9999999999998888766 PP

>> TIGR00409  proS_fam_II: proline--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.5   0.0   2.4e-08   1.9e-05      72     192 ..     380     499 ..     375     503 .. 0.84
   2 !    3.5   0.0    0.0067       5.5     467     558 ..     634     721 ..     620     731 .. 0.80

  Alignments for each domain:
  == domain 1    score: 21.5 bits;  conditional E-value: 2.4e-08
  TIGR00409  72 palqsaelWqesgRwdkygeellrlkDrkerefvLgpthEEvitdlvkneiksYkqlPvnlYqiqtKfRDEiRP.RfGllRgREFimKDaYsFhsdeeslkatyqkldeaYkkifsrlgldf 192
                p++ + +lW++sg   ky e+++ l D +++ef+L p        + k+  +sY++lP+ +      +R+E+     Gl R R F   Da  F     ++k++     e  k +++ lg+df
  MMETSP1137-20121227|559_1 380 PNMYNMNLWHTSGHAAKYKENMFCL-DIEGQEFGLKPMNCPGHCLMFKHRPRSYRELPIRMADFGVLHRNELSGaLTGLTRVRRFQQDDAHIFCMVS-QIKQEVRGCLEMIKTVYDWLGMDF 499
                5677789***********9999987.99*******************************************986158**************998654.455555666666666666666666 PP

  == domain 2    score: 3.5 bits;  conditional E-value: 0.0067
  TIGR00409 467 WpkaiAPyevvivvsnvkdeeqkklaeevyselkakgvdvllDdrneraGvkfrdseliGiplavvvGkksldnkeiEvkkrrngekqlikk 558
                Wp  + P +  +v+    +    ++ae+v+++++a+g+ +  D  n  +  ++r+ +l    + +vvG  + +++ ++v++r n e+q +k+
  MMETSP1137-20121227|559_1 634 WPFWLSPRQCLVVPVS--K-VYCEYAEKVKAKIHAAGYYADADLSNRTLNKMVREGQLSQYNFILVVGGDEQEKEAVNVRTRDN-EVQGVKS 721
                6666666666555443..3.45799***************99999999*********************999999999998766.4444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (737 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        93  (0.0226719); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.60u 0.16s 00:00:00.76 Elapsed: 00:00:00.82
# Mc/sec: 1186.29
//
Query:       MMETSP1137-20121227|560_1  [L=432]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.6e-07   27.2   0.0    3.6e-07   26.8   0.0    1.2  1  TIGR02632 RhaD_aldol-ADH: rhamnulose-1-phosphate aldolase/alcohol dehydrogenase
    8.1e-06   23.1   0.1    0.00012   19.3   0.0    2.4  2  TIGR01963 PHB_DH: 3-hydroxybutyrate dehydrogenase
    9.7e-05   20.0   0.1    0.00017   19.2   0.1    1.4  1  TIGR01830 3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase
    0.00067   16.9   0.2     0.0019   15.4   0.1    1.7  2  TIGR01831 fabG_rel: putative 3-oxoacyl-(acyl-carrier-protein) reductase
    0.00075   16.9   0.1     0.0011   16.3   0.1    1.3  1  TIGR01832 kduD: 2-deoxy-D-gluconate 3-dehydrogenase
     0.0014   15.7   0.1     0.0052   13.9   0.0    1.8  2  TIGR03325 BphB_TodD: cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase
     0.0018   15.5   0.1     0.0025   15.1   0.1    1.2  1  TIGR01500 sepiapter_red: sepiapterin reductase
      0.003   14.9   0.0       0.13    9.6   0.0    2.7  3  TIGR01289 LPOR: light-dependent protochlorophyllide reductase
  ------ inclusion threshold ------
      0.018   12.3   0.0      0.029   11.6   0.0    1.2  1  TIGR02415 23BDH: acetoin reductases


Domain annotation for each model (and alignments):
>> TIGR02632  RhaD_aldol-ADH: rhamnulose-1-phosphate aldolase/alcohol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.8   0.0   7.9e-10   3.6e-07     410     477 ..      98     166 ..      57     188 .. 0.89

  Alignments for each domain:
  == domain 1    score: 26.8 bits;  conditional E-value: 7.9e-10
  TIGR02632 410 kelarrvalvtGgasGiGrevarrlvdeGahvvladldaeaaeavaaelvdkfGadkava.lkldvtde 477
                 +l+++v lvtG+ sGiGr ++  l+++ a + ++   ae+ ++  +e++++ G+ k+++ l+  +t e
  MMETSP1137-20121227|560_1  98 LDLSGQVFLVTGANSGIGRSISEYLASRDATLYMVCRSAERGNKARDEIISQTGNSKVLSqLTXTITTE 166
                479******************************************************998677777766 PP

>> TIGR01963  PHB_DH: 3-hydroxybutyrate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.0   2.6e-07   0.00012       2      52 ..     103     153 ..     102     169 .. 0.80
   2 ?    0.9   0.0       0.1        48     109     137 ..     176     204 ..     163     217 .. 0.84

  Alignments for each domain:
  == domain 1    score: 19.3 bits;  conditional E-value: 2.6e-07
  TIGR01963   2 kvalvtGaasGiglaiakelaaaGakvvvndleeeaaeaaakeleeaggev 52 
                +v lvtGa+sGig+ i++ la   a++ ++  ++e  ++a+ e+ +++g+ 
  MMETSP1137-20121227|560_1 103 QVFLVTGANSGIGRSISEYLASRDATLYMVCRSAERGNKARDEIISQTGNS 153
                789*************************99999777777776665555444 PP

  == domain 2    score: 0.9 bits;  conditional E-value: 0.1
  TIGR01963 109 nltsafhtiraalpimkkqgwGriinias 137
                 +++a+ ++  a+p ++++   r+++++s
  MMETSP1137-20121227|560_1 176 LINGAYLLSTLAMPLLRRSAQPRVVYVSS 204
                468999*********************99 PP

>> TIGR01830  3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   0.1   3.7e-07   0.00017       2      52 ..     106     156 ..     105     174 .. 0.80

  Alignments for each domain:
  == domain 1    score: 19.2 bits;  conditional E-value: 3.7e-07
  TIGR01830   2 lvtGasrgiGkaiakklakegakvviterskeekaeelaeelkeagvkaaa 52 
                lvtGa+ giG++i++ la++ a++ +  rs e+  ++  e ++++g++ + 
  MMETSP1137-20121227|560_1 106 LVTGANSGIGRSISEYLASRDATLYMVCRSAERGNKARDEIISQTGNSKVL 156
                8************************99887777766666667777765554 PP

>> TIGR01831  fabG_rel: putative 3-oxoacyl-(acyl-carrier-protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.1   4.1e-06    0.0019       2      54 ..     106     157 ..     105     200 .. 0.81
   2 ?   -0.9   0.0      0.42   1.9e+02      96     146 ..     164     212 ..     159     220 .. 0.71

  Alignments for each domain:
  == domain 1    score: 15.4 bits;  conditional E-value: 4.1e-06
  TIGR01831   2 lvtgasrgigraialklaadgfeiavhyrsdradaeesvaairaqggnarllk 54 
                lvtga  gigr+i+  la+    + + +rs + +  ++ ++i +q gn+++l+
  MMETSP1137-20121227|560_1 106 LVTGANSGIGRSISEYLASRDATLYMVCRSAERGN-KARDEIISQTGNSKVLS 157
                8*************************999987765.55678888888888875 PP

  == domain 2    score: -0.9 bits;  conditional E-value: 0.42
  TIGR01831  96 seedwdavietnldgfynvihplvmpmirarkggriitlasvsgvmgnrgq 146
                + e +++ + ++l +   ++  l mp++r     r++ ++s  g m n g 
  MMETSP1137-20121227|560_1 164 TTEGYEVTLAAGLINGAYLLSTLAMPLLRRSAQPRVVYVSS--GGMYNSGW 212
                55666777777776666678899999999999999999885..55666665 PP

>> TIGR01832  kduD: 2-deoxy-D-gluconate 3-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.1   2.5e-06    0.0011       2      51 ..      99     151 ..      98     174 .. 0.72

  Alignments for each domain:
  == domain 1    score: 16.3 bits;  conditional E-value: 2.5e-06
  TIGR01832   2 sleGkvalvtGantGlGqgiavglaeaGadivgvgisel..setqek.vealG 51 
                +l G+v lvtGan+G+G++i+  la+  a +  v +s+   ++++++ ++++G
  MMETSP1137-20121227|560_1  99 DLSGQVFLVTGANSGIGRSISEYLASRDATLYMVCRSAErgNKARDEiISQTG 151
                799**********************9888876666555411334433134444 PP

>> TIGR03325  BphB_TodD: cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.0   1.1e-05    0.0052       2      64 ..      99     157 ..      98     167 .. 0.82
   2 ?   -1.0   0.0      0.41   1.8e+02     120     151 ..     182     212 ..     165     237 .. 0.78

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 1.1e-05
  TIGR03325   2 klkdevvlvtggasglgralvdrfvaegarvavldksaagleeleaahgdkvvgvegdvrlld 64 
                 l+++v lvtg  sg+gr++ +   +  a + ++ +sa++ ++ +    d++++ +g+ ++l+
  MMETSP1137-20121227|560_1  99 DLSGQVFLVTGANSGIGRSISEYLASRDATLYMVCRSAERGNKAR----DEIISQTGNSKVLS 157
                6899*********************************99876544....56666666666665 PP

  == domain 2    score: -1.0 bits;  conditional E-value: 0.41
  TIGR03325 120 llavkaalpalvasrgsviftvsnagfypngg 151
                ll+   a+p l  s    +  vs  g+y++g 
  MMETSP1137-20121227|560_1 182 LLS-TLAMPLLRRSAQPRVVYVSSGGMYNSGW 212
                443.457899999999999999*****98874 PP

>> TIGR01500  sepiapter_red: sepiapterin reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.1   5.5e-06    0.0025       2      58 ..     104     156 ..     103     176 .. 0.78

  Alignments for each domain:
  == domain 1    score: 15.1 bits;  conditional E-value: 5.5e-06
  TIGR01500   2 lllvtGasrGfGrelaqelakrlkaegsvlvLlaRndeaLkeskaeieaevsalsvd 58 
                + lvtGa  G+Gr++++ la+    +  +l ++ R+ e  +++++ei +++ + +v 
  MMETSP1137-20121227|560_1 104 VFLVTGANSGIGRSISEYLAS----RDATLYMVCRSAERGNKARDEIISQTGNSKVL 156
                679*****************9....45677788899999999999999876555543 PP

>> TIGR01289  LPOR: light-dependent protochlorophyllide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.6   0.0   0.00029      0.13       6      53 ..     105     151 ..     101     162 .. 0.85
   2 ?    0.4   0.0      0.18        82     100     141 ..     162     202 ..     158     211 .. 0.81
   3 ?    0.8   0.0      0.13        60     178     209 ..     220     251 ..     206     259 .. 0.85

  Alignments for each domain:
  == domain 1    score: 9.6 bits;  conditional E-value: 0.00029
  TIGR01289   6 viitgassglglaaakalvekgkwhvvmacrdlekaekaakslglpkd 53 
                 ++tga sg+g   +  l+++    + m cr  e+ +ka +++   ++
  MMETSP1137-20121227|560_1 105 FLVTGANSGIGRSISEYLASRD-ATLYMVCRSAERGNKARDEIISQTG 151
                689****************998.899*************998865554 PP

  == domain 2    score: 0.4 bits;  conditional E-value: 0.18
  TIGR01289 100 lfsadgyelsvatnhl.ghfllsnllledlkksdekdkrliil 141
                + +++gye+++a+  + g +lls l +  l++s   ++r++ +
  MMETSP1137-20121227|560_1 162 TITTEGYEVTLAAGLInGAYLLSTLAMPLLRRSA--QPRVVYV 202
                5789******999876599*******99999886..4566555 PP

  == domain 3    score: 0.8 bits;  conditional E-value: 0.13
  TIGR01289 178 midgkefkaakaykdsklcnmltvrelhrryh 209
                  dg++++   ay  +k  ++l ++e+ rry 
  MMETSP1137-20121227|560_1 220 NEDGQPYNKEMAYVYTKRGQVLLAEEMARRYG 251
                4699**************************96 PP

>> TIGR02415  23BDH: acetoin reductases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   6.3e-05     0.029       2      52 ..     104     155 ..     103     168 .. 0.77

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 6.3e-05
  TIGR02415   2 valvtGaaqGiGkaiaerLak.dGfavavadlneetaketakelkekgtkav 52 
                v lvtGa  GiG++i+e La  d    +v+   e+  k+  + ++++g+  v
  MMETSP1137-20121227|560_1 104 VFLVTGANSGIGRSISEYLASrDATLYMVCRSAERGNKARDEIISQTGNSKV 155
                679****************962666667777777777777777777776655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (432 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       111  (0.02706); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                        25  (0.00609459); expected 4.1 (0.001)
Passed Fwd filter:                         9  (0.00219405); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.39u 0.12s 00:00:00.51 Elapsed: 00:00:00.51
# Mc/sec: 1118.03
//
Query:       MMETSP1137-20121227|561_1  [L=298]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.3e-18   63.4   0.0    9.4e-18   62.9   0.0    1.2  1  TIGR01444 fkbM_fam: methyltransferase, FkbM family


Domain annotation for each model (and alignments):
>> TIGR01444  fkbM_fam: methyltransferase, FkbM family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.9   0.0   2.3e-21   9.4e-18       1     129 [.      85     212 ..      85     225 .. 0.90

  Alignments for each domain:
  == domain 1    score: 62.9 bits;  conditional E-value: 2.3e-21
  TIGR01444   1 vviDiGAniGdvslvfaravaegrviafEPlpdllekleenvklnnlkn.vkllnaAvgdregeleftvsddatgnsslaadselaeeseieVevvtlddlveeag.lekvdllKiDvEGaEleVLrglae 129
                v+iD+G+niG++sl +a a+ e  ++ fEP p  ++k+   ++ n+++  v+++ + ++d+ g++ +  +++++g+  +a+ ++ +e+  ++++vv ld+++  +    ++ +lK+D+EG E++ Lrgl+ 
  MMETSP1137-20121227|561_1  85 VLIDVGGNIGMFSLAAAAAGIE--THTFEPVPISAAKIMISAAHNGFRHlVHVYTMGASDEFGRFGMGFAESNQGGAVHAPVQG-DETPFVQIPVVPLDKVLPLNAfAPRPVYLKMDIEGGECRALRGLRH 212
                68***************99998..***********************99**************999988887887777776663.4555899**********99988899******************865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (298 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        78  (0.0190151); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.23u 0.15s 00:00:00.38 Elapsed: 00:00:00.44
# Mc/sec: 893.93
//
Query:       MMETSP1137-20121227|563_1  [L=533]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.7e-05   19.8   0.0    6.6e-05   19.3   0.0    1.1  1  TIGR03788 marine_srt_targ: marine proteobacterial sortase target protein


Domain annotation for each model (and alignments):
>> TIGR03788  marine_srt_targ: marine proteobacterial sortase target protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.0   1.6e-08   6.6e-05     267     363 ..     159     260 ..     146     278 .. 0.79

  Alignments for each domain:
  == domain 1    score: 19.3 bits;  conditional E-value: 1.6e-08
  TIGR03788 267 aqslkRevvfviDtsGsmagesieqAksalllalsqLkpkD....rfnvieFdsdv...ellfkkavpAtaenlerArqfvagLqAdGGtEmaeaLeaaledaa 363
                a s k ++vf +D  Gsm g+ i  Ak+ ++l +++L   +    rf ++++ ++    +++ +k+ p ta+ +++ r+ +++L+AdGG +  ea+ aal+ + 
  MMETSP1137-20121227|563_1 159 AESSKLDLVFTMDCTGSM-GSYIANAKQNIELIVRRLADAEgydlRFGLVAYRDHPpqdRTFITKTFPFTAD-VSQMRRNLNELRADGGGDGPEAVGAALRATR 260
                667788************.788***************876544468999***98753325677777777765.7788999********************9543 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (533 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       116  (0.0282789); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.17s 00:00:00.56 Elapsed: 00:00:00.44
# Mc/sec: 1598.87
//
Query:       MMETSP1137-20121227|564_1  [L=168]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (168 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       114  (0.0277913); expected 82.0 (0.02)
Passed bias filter:                       98  (0.0238908); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.14s 00:00:00.30 Elapsed: 00:00:00.31
# Mc/sec: 715.30
//
Query:       MMETSP1137-20121227|565_1  [L=184]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (184 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        53  (0.0129205); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.18s 00:00:00.36 Elapsed: 00:00:00.30
# Mc/sec: 809.53
//
Query:       MMETSP1137-20121227|568_1  [L=257]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (257 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       142  (0.0346173); expected 82.0 (0.02)
Passed bias filter:                      137  (0.0333983); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.16s 00:00:00.41 Elapsed: 00:00:00.31
# Mc/sec: 1094.23
//
Query:       MMETSP1137-20121227|569_1  [L=125]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (125 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       112  (0.0273038); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.11s 00:00:00.28 Elapsed: 00:00:00.28
# Mc/sec: 589.24
//
Query:       MMETSP1137-20121227|570_1  [L=197]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (197 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        99  (0.0241346); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.16s 00:00:00.36 Elapsed: 00:00:00.42
# Mc/sec: 619.09
//
Query:       MMETSP1137-20121227|571_1  [L=275]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (275 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        50  (0.0121892); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.17s 00:00:00.40 Elapsed: 00:00:00.39
# Mc/sec: 930.69
//
Query:       MMETSP1137-20121227|572_1  [L=369]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (369 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        68  (0.0165773); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.17s 00:00:00.42 Elapsed: 00:00:00.46
# Mc/sec: 1058.78
//
Query:       MMETSP1137-20121227|573_1  [L=213]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (213 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        39  (0.00950756); expected 82.0 (0.02)
Passed bias filter:                       39  (0.00950756); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.16s 00:00:00.37 Elapsed: 00:00:00.34
# Mc/sec: 826.87
//
Query:       MMETSP1137-20121227|574_1  [L=166]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.49    7.4   6.7        0.5    7.3   4.7    1.2  1  TIGR01347 sucB: dihydrolipoyllysine-residue succinyltransferase, E2 component of oxoglutarate dehydrogenase (succinyl-transferring) complex


Domain annotation for each model (and alignments):
>> TIGR01347  sucB: dihydrolipoyllysine-residue succinyltransferase, E2 component of oxoglutarate dehydrogenase (succinyl-transferring) complex
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   4.7   0.00012       0.5      85     161 ..      71     145 ..       9     163 .. 0.69

  Alignments for each domain:
  == domain 1    score: 7.3 bits;  conditional E-value: 0.00012
  TIGR01347  85 sekskeekeekaaakaekakeaaekkkalspaarklakeegidleavektkktgrvtkedivkkeekkasaakeaaa 161
                +e+++++++ k+a+ +++a+e++e++kal+   r++ + + id++ v  +k+ +r t+e+  +ke++k +  ++  +
  MMETSP1137-20121227|574_1  71 EEEAAAARQRKEAKLQAAAEEEQERQKALEAEERRIKSRKEIDEQ-VGYQKRFDR-TQENFRNKEKRKRAMGQQNRD 145
                344445555555666666677777777788888887777777755.555466566.777777777776443333332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (166 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       386  (0.0941004); expected 82.0 (0.02)
Passed bias filter:                      184  (0.0448562); expected 82.0 (0.02)
Passed Vit filter:                        20  (0.00487567); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.27u 0.18s 00:00:00.45 Elapsed: 00:00:01.07
# Mc/sec: 204.77
//
Query:       MMETSP1137-20121227|575_1  [L=103]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (103 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        74  (0.01804); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.17s 00:00:00.32 Elapsed: 00:00:00.38
# Mc/sec: 357.76
//
Query:       MMETSP1137-20121227|576_1  [L=220]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (220 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        83  (0.020234); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.16s 00:00:00.36 Elapsed: 00:00:00.27
# Mc/sec: 1075.47
//
Query:       MMETSP1137-20121227|577_1  [L=242]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (242 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        78  (0.0190151); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.14s 00:00:00.34 Elapsed: 00:00:00.34
# Mc/sec: 939.45
//
Query:       MMETSP1137-20121227|578_1  [L=155]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (155 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        54  (0.0131643); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.16s 00:00:00.32 Elapsed: 00:00:00.27
# Mc/sec: 757.72
//
Query:       MMETSP1137-20121227|579_1  [L=198]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.9e-32  107.5   0.0    1.1e-31  107.0   0.0    1.2  1  TIGR00049 TIGR00049: iron-sulfur cluster assembly accessory protein
    2.2e-26   90.0   0.0      3e-26   89.6   0.0    1.2  1  TIGR01997 sufA_proteo: FeS assembly scaffold SufA
    2.5e-26   89.8   0.2    3.3e-26   89.4   0.2    1.2  1  TIGR02011 IscA: iron-sulfur cluster assembly protein IscA
    2.8e-09   34.9   0.0    3.8e-09   34.4   0.0    1.1  1  TIGR03341 YhgI_GntY: IscR-regulated protein YhgI


Domain annotation for each model (and alignments):
>> TIGR00049  TIGR00049: iron-sulfur cluster assembly accessory protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  107.0   0.0   1.1e-34   1.1e-31       1     105 [.      90     197 ..      90     198 .] 0.93

  Alignments for each domain:
  == domain 1    score: 107.0 bits;  conditional E-value: 1.1e-34
  TIGR00049   1 itltdkaakkikelleeekeenkglrvgvkegGCsGlkykleleeek..eedDevve.kdgvkvvvdskslellegleidyveellgsgFkfsNPnakssCgCgkSFs 105
                i+++++a+ ++ +l e+++ ++ ++r+gv++gGCsG++y +++ e k  +e+D+v++ ++g+k v+d+ksl +l gl++dy+++l+g+gF+f+NPna s+CgCgkSF 
  MMETSP1137-20121227|579_1  90 ISFSESAMXQLIHLREKQGADSLHIRMGVRSGGCSGMSYVMDFMEGKdiTENDTVIDyQEGIKCVIDPKSLMFLYGLKLDYSDALIGGGFSFHNPNADSTCGCGKSFG 197
                6899***************************************986611579999984679**********************************************7 PP

>> TIGR01997  sufA_proteo: FeS assembly scaffold SufA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.6   0.0   2.9e-29     3e-26       2     107 .]      89     198 .]      88     198 .] 0.94

  Alignments for each domain:
  == domain 1    score: 89.6 bits;  conditional E-value: 2.9e-29
  TIGR01997   2 vleltdaaatrvrelvkkr.eeavgirlsvkktGcaGleyalelvs..epkeddvlle.kdGakvfvapeallflkGtevdfvkktlrqglkfnnPnatsacGcGesvel 107
                ++++ ++a+ ++ +l +k+  +   ir++v+ +Gc+G++y+++ ++  +  e+d +++ ++G+k +++p++l+fl G ++d+    ++ g+ f+nPna s cGcG s+++
  MMETSP1137-20121227|579_1  89 IISFSESAMXQLIHLREKQgADSLHIRMGVRSGGCSGMSYVMDFMEgkDITENDTVIDyQEGIKCVIDPKSLMFLYGLKLDYSDALIGGGFSFHNPNADSTCGCGKSFGV 198
                7999************99988999********************98224569******9************************************************985 PP

>> TIGR02011  IscA: iron-sulfur cluster assembly protein IscA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.4   0.2   3.2e-29   3.3e-26       2     105 .]      91     198 .]      90     198 .] 0.87

  Alignments for each domain:
  == domain 1    score: 89.4 bits;  conditional E-value: 3.2e-29
  TIGR02011   2 tlteaaakrvnsflanrg.kglglrlgvktsgcsgmayvlefvd..eaddddlvfe.dkgvkividakslvyldgiqldfvkeglnegfkfenpnvkdecgcgesfhv 105
                +++e+a  ++ +   ++g   l +r+gv++ gcsgm+yv++f++  + +++d v + ++g+k vid+ksl++l g++ld+    +  gf f+npn+   cgcg+sf v
  MMETSP1137-20121227|579_1  91 SFSESAMXQLIHLREKQGaDSLHIRMGVRSGGCSGMSYVMDFMEgkDITENDTVIDyQEGIKCVIDPKSLMFLYGLKLDYSDALIGGGFSFHNPNADSTCGCGKSFGV 198
                6678888888777777773579********************97224567787777368***********************************************76 PP

>> TIGR03341  YhgI_GntY: IscR-regulated protein YhgI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.4   0.0   3.7e-12   3.8e-09       1      95 [.      90     186 ..      90     190 .. 0.95

  Alignments for each domain:
  == domain 1    score: 34.4 bits;  conditional E-value: 3.7e-12
  TIGR03341   1 ititeaaqeylakllekqe.egikirvfvvnPGtpkaecgvayckpdeveeediklefd.efsayvdaksvpfledaeidfvtdklGgqltlkaPna 95 
                i+ +e+a   l +l ekq  + ++ir+ v + G +     + + + ++++e+d+ ++++ ++++++d ks+ fl   ++d++   +Gg + ++ Pna
  MMETSP1137-20121227|579_1  90 ISFSESAMXQLIHLREKQGaDSLHIRMGVRSGGCSGMSYVMDFMEGKDITENDTVIDYQeGIKCVIDPKSLMFLYGLKLDYSDALIGGGFSFHNPNA 186
                6789**************9899************************************6379**********************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (198 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        85  (0.0207216); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.20u 0.16s 00:00:00.36 Elapsed: 00:00:00.38
# Mc/sec: 687.73
//
Query:       MMETSP1137-20121227|580_1  [L=447]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (447 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       106  (0.0258411); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.15s 00:00:00.46 Elapsed: 00:00:00.60
# Mc/sec: 983.32
//
Query:       MMETSP1137-20121227|581_1  [L=393]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (393 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        64  (0.0156021); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.15s 00:00:00.44 Elapsed: 00:00:00.52
# Mc/sec: 997.53
//
Query:       MMETSP1137-20121227|582_1  [L=191]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0021   15.7   0.2     0.0035   15.0   0.2    1.2  1  TIGR03349 IV_VI_DotU: type IV / VI secretion system protein, DotU family


Domain annotation for each model (and alignments):
>> TIGR03349  IV_VI_DotU: type IV / VI secretion system protein, DotU family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.2   8.6e-07    0.0035     133     207 ..      63     135 ..      61     138 .. 0.81

  Alignments for each domain:
  == domain 1    score: 15.0 bits;  conditional E-value: 8.6e-07
  TIGR03349 133 rveedgreeleqlrsrlykllrsargkepealsphwaeaaaarkrlrrevplwvvlalaalllvllylglrllLs 207
                r+ee ++ e e + +++ + + +++++++++  ++++++ + ++ +    +l ++la++a++ ++++ +++++L+
  MMETSP1137-20121227|582_1  63 RKEESEKAERESVDTAVKNMVSKSMDQAQTKALQNYQKHYRRQQDIIL--ALLLLLAAVAAVTMCAFYYYDITLD 135
                778888999999999999999999999999888888887777766665..6777788888888899999999997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (191 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       467  (0.113847); expected 82.0 (0.02)
Passed bias filter:                      296  (0.0721599); expected 82.0 (0.02)
Passed Vit filter:                        22  (0.00536324); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.25u 0.18s 00:00:00.43 Elapsed: 00:00:00.43
# Mc/sec: 586.28
//
Query:       MMETSP1137-20121227|583_1  [L=556]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (556 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        94  (0.0229157); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.13s 00:00:00.50 Elapsed: 00:00:00.50
# Mc/sec: 1467.72
//
Query:       MMETSP1137-20121227|584_1  [L=117]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (117 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        43  (0.0104827); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.37
# Mc/sec: 417.37
//
Query:       MMETSP1137-20121227|585_1  [L=110]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (110 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        53  (0.0129205); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.14s 00:00:00.28 Elapsed: 00:00:00.31
# Mc/sec: 468.35
//
Query:       MMETSP1137-20121227|586_1  [L=446]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (446 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        73  (0.0177962); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.16s 00:00:00.46 Elapsed: 00:00:00.39
# Mc/sec: 1509.41
//
Query:       MMETSP1137-20121227|587_1  [L=182]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (182 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        70  (0.0170648); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.13s 00:00:00.31 Elapsed: 00:00:00.32
# Mc/sec: 750.69
//
Query:       MMETSP1137-20121227|588_1  [L=199]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (199 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        76  (0.0185275); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.19s 00:00:00.38 Elapsed: 00:00:00.33
# Mc/sec: 795.93
//
Query:       MMETSP1137-20121227|589_1  [L=254]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (254 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       210  (0.0511945); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.16s 00:00:00.39 Elapsed: 00:00:00.35
# Mc/sec: 957.86
//
Query:       MMETSP1137-20121227|590_1  [L=607]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (607 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       128  (0.0312043); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.15s 00:00:00.55 Elapsed: 00:00:00.47
# Mc/sec: 1704.63
//
Query:       MMETSP1137-20121227|591_1  [L=107]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (107 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        63  (0.0153584); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.16s 00:00:00.31 Elapsed: 00:00:00.28
# Mc/sec: 504.39
//
Query:       MMETSP1137-20121227|592_1  [L=132]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (132 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        58  (0.0141394); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.13s 00:00:00.29 Elapsed: 00:00:00.34
# Mc/sec: 512.43
//
Query:       MMETSP1137-20121227|593_1  [L=256]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (256 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       154  (0.0375427); expected 82.0 (0.02)
Passed bias filter:                      133  (0.0324232); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.14s 00:00:00.39 Elapsed: 00:00:00.73
# Mc/sec: 462.87
//
Query:       MMETSP1137-20121227|594_1  [L=295]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (295 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        56  (0.0136519); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.13s 00:00:00.35 Elapsed: 00:00:00.36
# Mc/sec: 1081.58
//
Query:       MMETSP1137-20121227|595_1  [L=351]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (351 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       116  (0.0282789); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.16s 00:00:00.42 Elapsed: 00:00:00.45
# Mc/sec: 1029.51
//
Query:       MMETSP1137-20121227|596_1  [L=294]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (294 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       103  (0.0251097); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.14s 00:00:00.37 Elapsed: 00:00:00.48
# Mc/sec: 808.43
//
Query:       MMETSP1137-20121227|598_1  [L=48]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (48 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        39  (0.00950756); expected 82.0 (0.02)
Passed bias filter:                       37  (0.00901999); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:00.34
# Mc/sec: 186.34
//
Query:       MMETSP1137-20121227|599_1  [L=591]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (591 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        43  (0.0104827); expected 82.0 (0.02)
Passed bias filter:                       40  (0.00975134); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.20s 00:00:00.52 Elapsed: 00:00:00.49
# Mc/sec: 1591.95
//
Query:       MMETSP1137-20121227|600_1  [L=836]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   1.5e-157  524.0   0.0   7.1e-144  478.7   0.0    2.0  2  TIGR01069 mutS2: MutS2 family protein
      1e-26   91.4   1.9    2.9e-26   89.9   1.3    1.7  1  TIGR01070 mutS1: DNA mismatch repair protein MutS


Domain annotation for each model (and alignments):
>> TIGR01069  mutS2: MutS2 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.8   0.0   1.2e-15   2.4e-12       5     161 ..      77     235 ..      74     239 .. 0.89
   2 !  478.7   0.0  3.5e-147  7.1e-144     214     771 .]     239     836 .]     233     836 .] 0.90

  Alignments for each domain:
  == domain 1    score: 43.8 bits;  conditional E-value: 1.2e-15
  TIGR01069   5 tLakLefdkvkeqllkfaatplgkvka.leLkppksveeskellekekalesien....nvrlkglaDireaLkraelgeivkgleeilkianvlkkvkelk.rlaeerqdleilskllaelitLselendikelidddgkvkdeaseeldeireslkaleee 161
                tL +Le++++  q++ fa t  g+ ++  +L  p++  es+ l +++ ++  ie+     ++l g+ D r     a   e+ +  e +   a +++ +++++ + ++++q+l++l  l   +++  el ++ik+ +d+ g v+d a + l+e+r+ +++l  e
  MMETSP1137-20121227|600_1  77 TLELLEWPRLSRQVAAFASTRQGRAAIgAGLAVPADQAESETLQQETAEAHFIEQqlnrPIELRGFGDXRA----ATGSELSTVCESLATAATLIRSFRDIQaEETQDTQRLQLLPALFDGIPEQAELRRAIKDAVDESGSVRDTAAASLGELRFAIRELSAE 235
                899*********************999568**********9999999999999997655567888888887....666677777788889999*********777889999************************************************9876 PP

  == domain 2    score: 478.7 bits;  conditional E-value: 3.5e-147
  TIGR01069 214 GetlYvePqaivelnnklaqlkrkeeeeiekilrqlsekva..eylleLeellkeltelDllqararyakavkaefpeistt..kvielkearHPlLkesk.........vvpvtlelksekrviiiTGpNtGGKTvtLKtlgllalmaksgipipake......ss.....elplFeeifadIgDeQsieqnlSTFsshmkniseiLkkldensLvllDElgaGTDpdegsaLaislLeklakqnalvlitTHykelkalkyeseevenasvefDeetlsPtYklligvpGrSyAfeiaqrlglpseiiekAkeklgeekeeinkviekleekekeleekaeelekllkeleklkkeleqkakelkererklkkelekeaqealkaakkeveeiirelkekkiekakekk...atell.....kklk.....eekakvpqkpknlqad..kvGdkvkvesfgqk.gkvvevkkgkkvnvtvgllklkvkeselekink....appkkkekvpkkvkake.....keesltldlrGerseeAlsrlekflddallaGyekvkiiHGkGsGkLrkgVkelLknhkkvksyrfaeaneGGsGvtivkLk 771
                  tlYveP+++  +n kl+ql ++ee +i+ +l+ ls++v   ++  e+++l ++++++Dl++arary+ ++ a+++ ++    + ++l ++ HP+L+++          v+p +  ++  krv +iTGpNtGGKTv+LKtlgl+alma+ g+ ++ ++      +s     ++p+F++++adIgD+Qsi q+lSTFs+h+ ++ +iL++++ nsLvllDE+gaGTDp+egsaL+ ++L+ la + al + tTH++ lk lky + ++ena vefD+  l PtY+ll+g+pGrS+A++ia+rlg+ +e+++ A   l + + e+ +v++ ++e++ e++   +el  l+ e+   ++++  +ake+  +e++l  ++    +  l+aak ++  ++ e++ ++     +k+   +++ l     +          ++ +p+++ +   d   vGd v v   g++ +kv ev+k k+++vt g ++++vk se+ k +     a  +kk kv  k          + +s+ ldlrG+r+ e  ++l +++d al+ G   + +iHG+G+G +rk V+e+L + ++v  +++a+ +eGG G ti++L+
  MMETSP1137-20121227|600_1 239 AXTLYVEPKQVEAANTKLRQLAKREEAIINAVLKALSQRVGapKVSSEMQQLDAAVVRVDLATARARYSAKMRATPVVFGSLrhEGLRLDQMFHPMLVWKGdgaapnisnVMPQDYVMDVSKRVAVITGPNTGGKTVALKTLGLAALMARAGLWVVSGAgrrgdsTSaptpiRMPYFDKVMADIGDDQSIVQSLSTFSAHVARVQAILQQVTRNSLVLLDEVGAGTDPTEGSALGTAVLRRLAATAALAVCTTHHGSLKTLKYSDPRFENACVEFDDVALAPTYRLLWGIPGRSNAIAIARRLGMQREVVDDADALLNDGELEVGQVVAAMQEEQEEQRALSAELSALRDEAAATRDAMAAQAKEQARAEQQLMAQQRAALEAELEAAKAQIRALLDEARSGNADGSAQKQaslSQQKLsrigkQ--AfqtveADQQGAPERKVEASLDdiSVGDLVLVARLGDSpVKVDEVQK-KQLVVTFGGFRMNVKISEVLKPKAppqpASSPKKAKVANK----RertavRLASNSLDLRGMRVAEVGDKLVQAVDRALEMG--TLYVIHGRGTGSMRKYVREVLAEEPMVERFEDAPESEGGNGCTIAYLR 836
                579*************************************74468899*******************************987889**************9999****************************************************9754222211223333379***********************************************************************************************************************************************************************************************************************************996543333300022333444441..2445436677788888888877799*********9987589999*99.*******************999994433333444444333....24555799******************************..**********************************************96 PP

>> TIGR01070  mutS1: DNA mismatch repair protein MutS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.9   1.3   1.4e-29   2.9e-26     508     806 ..     262     583 ..     243     615 .. 0.73

  Alignments for each domain:
  == domain 1    score: 89.9 bits;  conditional E-value: 1.4e-29
  TIGR01070 508 lekelfeelrekvkkel......eaLqeaakalaelDvlaalaevaetlnyvrPefgd..eselrireGrhpv.vekvl.kee....fvandleladnrelllitGPnmsGkstylrqtaliallaqiGsfvPa........ek....aelpliDriftriGaaDDLasGrstfmvemeevanilkeatensLvLlDevGrGtstyDGlalaqaiaealhekiraltLfathYfeLtaLeekleklknvhvaaleengtvvflhkvkeGaasksYGlavaalaglPkeviararekLkeleassskseaplreaqkketeqlslf 806
                +e+++ ++++  + +++      +++q++  a+  +D  +a a  + ++  +   fg   +  lr+ +  hp+ v k   + +     ++ d  ++  +++ +itGPn +Gk   l+ + l al+a+ G +v +         +    +++p +D++ + iG    ++   stf   +  v+ il++ t+nsLvLlDevG Gt   +G al +a+   l+    al++ +th+  L +L+ + ++ +n  v+    +  ++  ++++ G   +s  +a+a+  g+ +ev++ a+++L++ e +  +  a ++e q+++++    +
  MMETSP1137-20121227|600_1 262 REEAIINAVLKALSQRVgapkvsSEMQQLDAAVVRVDLATARARYSAKMRATPVVFGSlrHEGLRLDQMFHPMlVWKGDgAAPnisnVMPQDYVMDVSKRVAVITGPNTGGKTVALKTLGLAALMARAGLWVVSgagrrgdsTSaptpIRMPYFDKVMADIGDDQSIVQSLSTFSAHVARVQAILQQVTRNSLVLLDEVGAGTDPTEGSALGTAVLRRLAA-TAALAVCTTHHGSLKTLKYSDPRFENACVEFD--DVALAPTYRLLWGIPGRSNAIAIARRLGMQREVVDDADALLNDGELEVGQVVAAMQEEQEEQRALSAEL 583
                44455555554444444111111345666666666666666666666666666666542244677777777752333323333000045567789999*********************************9642222222112222258999*******************************************************************9.99************************998765..55789999*********************************9988877777677776666663332222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (836 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       433  (0.105558); expected 82.0 (0.02)
Passed bias filter:                      112  (0.0273038); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.38s 00:00:00.90 Elapsed: 00:00:00.78
# Mc/sec: 1414.65
//
Query:       MMETSP1137-20121227|601_1  [L=170]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (170 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        41  (0.00999512); expected 82.0 (0.02)
Passed bias filter:                       32  (0.00780107); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.10s 00:00:00.27 Elapsed: 00:00:00.56
# Mc/sec: 400.68
//
Query:       MMETSP1137-20121227|602_1  [L=141]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (141 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        65  (0.0158459); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.17s 00:00:00.34 Elapsed: 00:00:00.54
# Mc/sec: 344.64
//
Query:       MMETSP1137-20121227|603_1  [L=132]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (132 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        30  (0.00731351); expected 82.0 (0.02)
Passed bias filter:                       27  (0.00658216); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.15s 00:00:00.30 Elapsed: 00:00:00.38
# Mc/sec: 458.49
//
Query:       MMETSP1137-20121227|604_1  [L=63]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (63 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       101  (0.0246221); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.27
# Mc/sec: 307.97
//
Query:       MMETSP1137-20121227|605_1  [L=290]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (290 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        55  (0.0134081); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.13s 00:00:00.36 Elapsed: 00:00:00.36
# Mc/sec: 1063.25
//
Query:       MMETSP1137-20121227|606_1  [L=410]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (410 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        88  (0.0214529); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.17s 00:00:00.46 Elapsed: 00:00:00.35
# Mc/sec: 1546.16
//
Query:       MMETSP1137-20121227|607_1  [L=116]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (116 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        56  (0.0136519); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.12s 00:00:00.27 Elapsed: 00:00:00.27
# Mc/sec: 567.06
//
Query:       MMETSP1137-20121227|608_1  [L=218]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (218 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       161  (0.0392491); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.12s 00:00:00.32 Elapsed: 00:00:00.35
# Mc/sec: 822.10
//
Query:       MMETSP1137-20121227|609_1  [L=563]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (563 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        50  (0.0121892); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.18s 00:00:00.54 Elapsed: 00:00:00.56
# Mc/sec: 1303.68
//
Query:       MMETSP1137-20121227|610_1  [L=648]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.016   12.1   0.2      0.016   12.1   0.1    2.2  2  TIGR00155 pqiA_fam: integral membrane protein, PqiA family


Domain annotation for each model (and alignments):
>> TIGR00155  pqiA_fam: integral membrane protein, PqiA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.1   3.8e-06     0.016     297     366 ..     275     339 ..     271     346 .. 0.84
   2 ?   -0.6   0.5     0.028   1.1e+02     361     392 ..     363     394 ..     355     400 .. 0.63

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 3.8e-06
  TIGR00155 297 yavaavvflasilvPilkvivilylllsvkfkgkrdlkrrilllelvefvGrWsmldlfviallmslvrr 366
                ++va  +fl+s + P +k++  l+l++ ++     +  rr+ l+ l +f G+Ws  d++ +++l+ l++ 
  MMETSP1137-20121227|610_1 275 IPVAIFLFLSSFVWPHVKLLG-LHLCFYAELP---SRGRRVSLYWLATF-GKWSFADVLAMCVLVGLINL 339
                89****************876.4677776654...34578899999998.****************9985 PP

  == domain 2    score: -0.6 bits;  conditional E-value: 0.028
  TIGR00155 361 mslvrrgeilsftvgpgaly.fgaaviltllsa 392
                + lv+    ls+  g++a+y f aavil ll  
  MMETSP1137-20121227|610_1 363 SLLVQASATLSVR-GMAAMYsFCAAVILSLLIG 394
                4456666666654.5666555888888888755 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (648 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       114  (0.0277913); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.16s 00:00:00.59 Elapsed: 00:00:00.72
# Mc/sec: 1187.90
//
Query:       MMETSP1137-20121227|611_1  [L=217]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (217 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        87  (0.0212092); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.17s 00:00:00.36 Elapsed: 00:00:00.34
# Mc/sec: 842.40
//
Query:       MMETSP1137-20121227|612_1  [L=181]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (181 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        31  (0.00755729); expected 82.0 (0.02)
Passed bias filter:                       29  (0.00706972); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.15s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 823.79
//
Query:       MMETSP1137-20121227|613_1  [L=391]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (391 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        89  (0.0216967); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.17s 00:00:00.44 Elapsed: 00:00:00.37
# Mc/sec: 1394.80
//
Query:       MMETSP1137-20121227|614_1  [L=376]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (376 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        59  (0.0143832); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.14s 00:00:00.39 Elapsed: 00:00:00.39
# Mc/sec: 1272.51
//
Query:       MMETSP1137-20121227|615_1  [L=229]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0017   16.2   0.0     0.0025   15.7   0.0    1.3  1  TIGR00523 eIF-1A: translation initiation factor eIF-1A


Domain annotation for each model (and alignments):
>> TIGR00523  eIF-1A: translation initiation factor eIF-1A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0     6e-07    0.0025      17      76 ..      73     134 ..      58     159 .. 0.76

  Alignments for each domain:
  == domain 1    score: 15.7 bits;  conditional E-value: 6e-07
  TIGR00523  17 eegeilgvvekllGagrvkvrcldGkkrlaripGklkkkiwireGdvvlvk.pwefq.ddka 76 
                  ++ +  v+ + G   v ++ ++G   l+rip k ++  w++ G  ++v  + +   d++a
  MMETSP1137-20121227|615_1  73 TADQCVVRVTAINGGNLVSASDANGMSYLCRIPAKYHNVFWVKIGGYLIVDkLPDASnDENA 134
                55677888999********************************9998888513344334444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (229 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        51  (0.012433); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.20u 0.12s 00:00:00.32 Elapsed: 00:00:00.37
# Mc/sec: 816.91
//
Query:       MMETSP1137-20121227|616_1  [L=172]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.15   10.1   6.9       0.14   10.2   0.5    2.3  2  TIGR04117 Syntroph_Cxxx: Cys-Xaa-Xaa-Xaa repeat radical SAM target protein


Domain annotation for each model (and alignments):
>> TIGR04117  Syntroph_Cxxx: Cys-Xaa-Xaa-Xaa repeat radical SAM target protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.5   3.3e-05      0.14      49      77 ..      31      59 ..      22      77 .. 0.83
   2 ?    3.3   0.5    0.0047        19      44      67 ..     108     130 ..      84     137 .. 0.61

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 3.3e-05
  TIGR04117 49 lspravaadcasicsggcseacsgctdGc 77
                    +a+ ca   + +cs  c gct+ c
  MMETSP1137-20121227|616_1 31 AQRTVLATSCALYLAPACSWFCMGCTGMC 59
               444568999**************999888 PP

  == domain 2    score: 3.3 bits;  conditional E-value: 0.0047
  TIGR04117  44 lslaklspravaadcasicsggcs 67 
                l+l ++ + a+aa  +s+c  +c 
  MMETSP1137-20121227|616_1 108 LTLLST-AAALAAAVSSVCWLACA 130
                333332.55666666677766665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (172 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       152  (0.0370551); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.19u 0.15s 00:00:00.34 Elapsed: 00:00:00.31
# Mc/sec: 732.33
//
Query:       MMETSP1137-20121227|618_1  [L=316]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.9e-55  184.5   0.1      4e-55  184.0   0.1    1.2  1  TIGR03164 UHCUDC: OHCU decarboxylase
    1.6e-35  119.7   0.0    2.5e-35  119.1   0.0    1.3  1  TIGR02962 hdxy_isourate: hydroxyisourate hydrolase
    5.4e-17   60.1   0.1    1.7e-16   58.5   0.1    1.7  2  TIGR03180 UraD_2: OHCU decarboxylase


Domain annotation for each model (and alignments):
>> TIGR03164  UHCUDC: OHCU decarboxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  184.0   0.1   2.9e-58     4e-55       4     157 .]      36     189 ..      33     189 .. 0.98

  Alignments for each domain:
  == domain 1    score: 184.0 bits;  conditional E-value: 2.9e-58
  TIGR03164   4 adfvaalgdifEhspwvaeraaaqrpfdsiedlhaalveaveaaekeeqlaliraHPdLagklavageltaeStsEqasAGldklseeEferftrlNeaykerfgfPfilavkgktkesilaaleaRlendketEfkealeeieriarfRLedl 157
                ++f +alg+++E+s+wva r++++ pf+s+++l +a+ e+v +a++eeqlal+ aHPdLagk+a agelt eStsEqa+AGl+ l++eE+e ft lN++y+e+fgfPfilav+++ k+ ilaa+  Rl +++ +E+++al+++++ia++R++d+
  MMETSP1137-20121227|618_1  36 QRFESALGGVYEKSAWVASRTFDKGPFSSLSALATAMRETVDSATEEEQLALLCAHPDLAGKAALAGELTPESTSEQARAGLSSLTAEELEGFTALNSKYREKFGFPFILAVRNARKSTILAAFPPRLAKTRGEEMAAALAQVHKIAWMRMRDI 189
                7899***************************************************************************************************************************************************985 PP

>> TIGR02962  hdxy_isourate: hydroxyisourate hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  119.1   0.0   1.8e-38   2.5e-35       2     113 .]     196     316 .]     195     316 .] 0.93

  Alignments for each domain:
  == domain 1    score: 119.1 bits;  conditional E-value: 1.8e-38
  TIGR02962   2 sklttHvldtasGkpaagvkveleklee.....eeskklaeavtnadGrvkelllekeklkaGeyklkfevgeyfkakkv....esfypevevkfevkeeeehyHvPlllspygystYrGs 113
                 klt+Hvldta+G paag+++ l k+       e +k + + vtn+dGr++ + l++e++++G+y+ +f+vg+yf+a +v    + f+  v+++f ++++e+hyHvPll sp++ystYrGs
  MMETSP1137-20121227|618_1 196 GKLTCHVLDTARGIPAAGMTIVLRKRVVqesgeEAWKVVGNFVTNSDGRLNGPALQGEAFTEGVYEWTFSVGDYFAAAGVptpgTPFLSDVPLRFGIDNPEQHYHVPLLCSPWSYSTYRGS 316
                589******************99876433345355********************************************9999999**********************************9 PP

>> TIGR03180  UraD_2: OHCU decarboxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.5   0.1   1.3e-19   1.7e-16      13     157 ..      42     189 ..      33     190 .. 0.88
   2 ?   -1.8   0.0      0.45   6.2e+02     115     142 ..     206     233 ..     202     239 .. 0.82

  Alignments for each domain:
  == domain 1    score: 58.5 bits;  conditional E-value: 1.3e-19
  TIGR03180  13 llecvaisaWae.klvaaRPfasaeallkaaeealaelseedleeAlaaHPriGekkakqaaeaatkrrEq..agvdeadeevkaalaegNaaYeekFGfiflvrAaGrsaeelldllqaRlendpeeEkeivaeelakiallRlerl 157
                l  + + saW++ +  ++ Pf+s +al +a +e++++ +ee+  + l aHP +  k a +   + ++ +Eq  ag+ + ++e  + ++++N++Y ekFGf f++         +l++   Rl ++  eE   + ++  kia +R++ +
  MMETSP1137-20121227|618_1  42 LGGVYEKSAWVAsRTFDKGPFSSLSALATAMRETVDSATEEEQLALLCAHPDLAGKAALAGELTPESTSEQarAGLSSLTAEELEGFTALNSKYREKFGFPFILAVRNARKSTILAAFPPRLAKTRGEEMAAALAQVHKIAWMRMRDI 189
                5567788999862688999*********************************988887665555555555522799***************************9999999999*******************************9865 PP

  == domain 2    score: -1.8 bits;  conditional E-value: 0.45
  TIGR03180 115 AaGrsaeelldllqaRlendpeeEkeiv 142
                A G  a  +  +l++R+ ++  eE   v
  MMETSP1137-20121227|618_1 206 ARGIPAAGMTIVLRKRVVQESGEEAWKV 233
                78889999999*****999998887666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (316 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       178  (0.0433935); expected 82.0 (0.02)
Passed bias filter:                      129  (0.0314481); expected 82.0 (0.02)
Passed Vit filter:                        18  (0.0043881); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.28u 0.16s 00:00:00.44 Elapsed: 00:00:00.44
# Mc/sec: 947.92
//
Query:       MMETSP1137-20121227|619_1  [L=364]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.7e-05   22.8   0.0      3e-05   22.0   0.0    1.3  1  TIGR00251 TIGR00251: TIGR00251 family protein


Domain annotation for each model (and alignments):
>> TIGR00251  TIGR00251: TIGR00251 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.0   0.0   7.3e-09     3e-05      10      76 ..     217     284 ..     213     296 .. 0.84

  Alignments for each domain:
  == domain 1    score: 22.0 bits;  conditional E-value: 7.3e-09
  TIGR00251  10 isievqpkaskesivslneWrkrvevkikaPakeGkAnrelikffkeiFkk...dveivsGeksrqKtik 76 
                + +ev p+  k+ i  +n+   +v v++ aPa+eG An e+++++ ++  +   + ++ +G   +++ + 
  MMETSP1137-20121227|619_1 217 LALEVTPEQPKKAITHVNN--AEVGVAVCAPAREGLANAEVLELMVRVLSVtrqQLQLSRGVSTKSRFLL 284
                7899***************..*********************9998887655557888888766666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (364 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        78  (0.0190151); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.27u 0.18s 00:00:00.45 Elapsed: 00:00:00.45
# Mc/sec: 1067.65
//
Query:       MMETSP1137-20121227|620_1  [L=527]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (527 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       103  (0.0251097); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.15s 00:00:00.50 Elapsed: 00:00:00.59
# Mc/sec: 1178.95
//
Query:       MMETSP1137-20121227|621_1  [L=235]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (235 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        91  (0.0221843); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.16s 00:00:00.37 Elapsed: 00:00:00.38
# Mc/sec: 816.25
//
Query:       MMETSP1137-20121227|622_1  [L=140]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (140 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        50  (0.0121892); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.14s 00:00:00.30 Elapsed: 00:00:00.32
# Mc/sec: 577.45
//
Query:       MMETSP1137-20121227|623_1  [L=194]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (194 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        95  (0.0231594); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.16s 00:00:00.36 Elapsed: 00:00:00.26
# Mc/sec: 984.84
//
Query:       MMETSP1137-20121227|624_1  [L=302]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.7e-05   20.6  28.2    2.1e-05   20.2  19.5    1.0  1  TIGR02168 SMC_prok_B: chromosome segregation protein SMC
    0.00014   17.5  23.1    0.00018   17.1  16.0    1.1  1  TIGR02169 SMC_prok_A: chromosome segregation protein SMC
     0.0052   14.1   0.9     0.0084   13.4   0.5    1.4  1  TIGR01832 kduD: 2-deoxy-D-gluconate 3-dehydrogenase
  ------ inclusion threshold ------
       0.13    8.2   5.1       0.18    7.8   3.6    1.1  1  TIGR00833 actII: transport protein
       0.55    6.9  14.2       0.89    6.2   9.8    1.4  1  TIGR03794 NHLM_micro_HlyD: NHLM bacteriocin system secretion protein
        1.8    4.5  14.9        2.5    4.1  10.4    1.1  1  TIGR01069 mutS2: MutS2 family protein


Domain annotation for each model (and alignments):
>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2  19.5   3.1e-08   2.1e-05     676     854 ..     105     281 ..      83     296 .. 0.40

  Alignments for each domain:
  == domain 1    score: 20.2 bits;  conditional E-value: 3.1e-08
  TIGR02168 676 erkkeieeleeeieeleekiaelekelkelekeleeleeeleklrkeleelerklselkkelerlekeveqleerlaqlekeleeleeereeleeeleeaeeelkeaeeeieeleaei.eqlkeelkalrealseleaeltelkeeaaekeerleslekeiaalekeleeleeqieelee 854
                +   + +  e+ +++ e++i+  ++ ++++++   +++ +l  +r+++ e++r+l+++++++++l +e+e+++ r+++++   ++l+e+ e++e+   +  ++l+ea + +e+++++  ++l++ ++a++++++++++  t+  ++++++  +l++ e+e+a++e  l+ le+q++e+++
  MMETSP1137-20121227|624_1 105 SA--RRQAEEAAVAACEAAISRVQAXVAAARRHVHDAKAALLGAREAESEARRRLDAAQQQFDQLVAEAEEIS-RADSEHVSTSDLQERLEAAERXYGDYAKKLDEATRLLEAEKEKQkQELEAPMEASKDDVEKAKEGKTRAAQALKRNVVGLRRAEEELAEKEAALKSLEQQLAEMNA 281
                11..112223334444444444444444444444444444444444444444444444444444444444443.3333344444444444444444444444443333333322222202223333333333333333333444444444444444444444444444444444444433 PP

>> TIGR02169  SMC_prok_A: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1  16.0   2.7e-07   0.00018     711     891 ..      98     282 ..      83     291 .. 0.75

  Alignments for each domain:
  == domain 1    score: 17.1 bits;  conditional E-value: 2.7e-07
  TIGR02169 711 klsdaekkieei..ekeleqleeeeeklkerleeleeklseleeeleekkeelkeleaeieeleeklaklkealedleaelsee.kieeieeelekleeevsriearleeieaelnkle.lekelleeeiqelqeeieeleeqkkeiekeieelkakleeleeeleeleaavreLeeelkdLkke 891
                +l +ae + ++   e+ + + e+  +++++ +++ +++++  + +l  ++e   e + ++++ +++  +l ++ e++ + +se+     ++e+le+ e    +  ++l+e+ + l++++  +k+ le  ++  ++++e+++e k   +++++     l+  eeel+e+eaa++ Le++l+++++e
  MMETSP1137-20121227|624_1  98 HLAQAELSARRQaeEAAVAACEAAISRVQAXVAAARRHVHDAKAALLGAREAESEARRRLDAAQQQFDQLVAEAEEISRADSEHvSTSDLQERLEAAERXYGDYAKKLDEATRLLEAEKeKQKQELEAPMEASKDDVEKAKEGKTRAAQALKRNVVGLRRAEEELAEKEAALKSLEQQLAEMNAE 282
                33333333333300333445666777788888888888888888888888888888888888888888888888888776655425677888888888888888888888888888777677888999999999999999999999999999999999999999999999999999999998876 PP

>> TIGR01832  kduD: 2-deoxy-D-gluconate 3-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.5   1.2e-05    0.0084      17     109 ..      99     192 ..      87     198 .. 0.83

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 1.2e-05
  TIGR01832  17 lGqgiavglaeaGadivgvgiselsetqekvealGrkflslkadladeeaakalvdeaveeag.kidilvnnaGiirredavefsekdwddvln 109
                l q+   +  +a    v++  +++s  q+ v+a  r+++  ka l   ++a++   + +++a+ ++d lv +a  i r+d++++s +d ++ l+
  MMETSP1137-20121227|624_1  99 LAQAELSARRQAEEAAVAACEAAISRVQAXVAAARRHVHDAKAALLGAREAESEARRRLDAAQqQFDQLVAEAEEISRADSEHVSTSDLQERLE 192
                55655566667777788999999*********************999888887777777665439*********************99998765 PP

>> TIGR00833  actII: transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   3.6   0.00027      0.18     467     629 ..     117     282 ..     100     286 .. 0.80

  Alignments for each domain:
  == domain 1    score: 7.8 bits;  conditional E-value: 0.00027
  TIGR00833 467 kvsfqagelgdkldeatklleerldqllqdaeklaeaiaalrllqalmdllgenasqvvla......vralqdalsklrdeaedvadiasPlrsalaaepeCrsdPvCrtareivqaaddvvevaakladevgdlartvatldsalkqvssllkaldglrtklaqmres 629
                +  + ++ + +    a    ++  + ll+ +e+ +ea   l+  q+  d+l  +a++++ a      +  lq+ l   +   +d a+  +   + l+ae+e + + +      +   +ddv + ++ ++ +++ l+r v  l  a ++++    al +l+ +la+m+  
  MMETSP1137-20121227|624_1 117 ACEAAISRVQAXVAAARRHVHDAKAALLGAREAESEARRRLDAAQQQFDQLVAEAEEISRAdsehvsTSDLQERLEAAERXYGDYAKKLDEATRLLEAEKEKQKQELEAP---MEASKDDVEKAKEGKTRAAQALKRNVVGLRRAEEELAEKEAALKSLEQQLAEMNAE 282
                45678999999999999999999**************************9996666665431111115678888888888888888888888888888888777655433...33467899999999***************************************865 PP

>> TIGR03794  NHLM_micro_HlyD: NHLM bacteriocin system secretion protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   9.8    0.0013      0.89      90     221 ..     149     276 ..      92     285 .. 0.69

  Alignments for each domain:
  == domain 1    score: 6.2 bits;  conditional E-value: 0.0013
  TIGR03794  90 eqpelrerlqearekLtqLqeqlekvrnfqvrekear..ekkflkskeaLeetigklreeeaaLsqevakqrqllsrklaklkrarillqqarkeqekrdeadkaeaeyelqtkadeeel...etvvaklkqadlql 221
                ++ e r+rl+ a+++  qL  + e++ + + ++ ++   + ++  ++    + ++kl e++ +L+ e++kq+q l+     ++  +  +++a++ +++ ++a+k ++      + +eeel   e  +++l+q+   l
  MMETSP1137-20121227|624_1 149 AESEARRRLDAAQQQFDQLVAEAEEISRADSEHVSTSdlQERLEAAERXYGDYAKKLDEATRLLEAEKEKQKQELEAP---MEASKDDVEKAKEGKTRAAQALKRNVVG---LRRAEEELaekEAALKSLEQQ---L 276
                567788899999999999999999999888766554311333344445567779999999999999999999999887...4445555566666666666666666655...333333331113333344443...3 PP

>> TIGR01069  mutS2: MutS2 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1  10.4    0.0037       2.5     501     621 ..     152     268 ..     143     284 .. 0.77

  Alignments for each domain:
  == domain 1    score: 4.1 bits;  conditional E-value: 0.0037
  TIGR01069 501 kAkeklgeekeeinkviekleekekeleekaeelekllkeleklkkeleqkakelkererklkkelekeaqealkaakkeveeiirelkekkiekakekkatellkklkeekakvpqkpkn 621
                +A++ l + +++ ++++++ ee  +   e+  ++ +l + le  ++     ak+l e+ r l+ e+ek+ q  l+a ++ +++ ++++ke+k  +a++ k  ++++ l+  +++ ++k   
  MMETSP1137-20121227|624_1 152 EARRRLDAAQQQFDQLVAEAEEISRADSEH-VSTSDLQERLEAAERXYGDYAKKLDEATRLLEAEKEKQKQ-ELEAPMEASKDDVEKAKEGKTRAAQALKR-NVVG-LRRAEEELAEKEAA 268
                689999999************999976665.5667788889999999999999999999999999888765.59999***************999888885.5553.33344444444433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (302 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       380  (0.0926377); expected 82.0 (0.02)
Passed bias filter:                      120  (0.029254); expected 82.0 (0.02)
Passed Vit filter:                        19  (0.00463189); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.38u 0.20s 00:00:00.58 Elapsed: 00:00:00.61
# Mc/sec: 653.45
//
Query:       MMETSP1137-20121227|625_1  [L=466]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (466 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       166  (0.0404681); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.15s 00:00:00.50 Elapsed: 00:00:00.54
# Mc/sec: 1139.02
//
Query:       MMETSP1137-20121227|626_1  [L=175]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (175 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        43  (0.0104827); expected 82.0 (0.02)
Passed bias filter:                       42  (0.0102389); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.13s 00:00:00.30 Elapsed: 00:00:00.28
# Mc/sec: 796.49
//
Query:       MMETSP1137-20121227|628_1  [L=596]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      1e-18   64.7   4.2    7.5e-08   28.8   0.0    4.0  3  TIGR00198 cat_per_HPI: catalase/peroxidase HPI


Domain annotation for each model (and alignments):
>> TIGR00198  cat_per_HPI: catalase/peroxidase HPI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.8   0.0   1.8e-11   7.5e-08      80     153 ..      34     105 ..      30     125 .. 0.86
   2 !   18.9   0.0   1.7e-08     7e-05     218     258 ..     130     169 ..     108     172 .. 0.82
   3 !   12.7   0.4   1.3e-06    0.0053     296     396 ..     172     252 ..     170     267 .. 0.85

  Alignments for each domain:
  == domain 1    score: 28.8 bits;  conditional E-value: 1.8e-11
  TIGR00198  80 ggllirlawhaagtyriidgrggaadgsqrfaplnswpdnvnldkarrllwpikkkygrklswadliilagtva 153
                g++l+rlawh agty +    gg  +  +rf p  s+  +  l+ ar ll p++      ls+ad+  la  v 
  MMETSP1137-20121227|628_1  34 GPILVRLAWHDAGTYDVKTKTGGP-HAAMRFEPEASYAADAGLNIARDLLEPVHAAL-PGLSYADIWQLAAVVE 105
                899************988776665.6789************************9876.579*****99998774 PP

  == domain 2    score: 18.9 bits;  conditional E-value: 1.7e-08
  TIGR00198 218 gspdplsaaqeirvtfarmgmndeetvaliagghtlgkchg 258
                  pd    a ++r  f rmg+nd+e val +g ht+g+ch 
  MMETSP1137-20121227|628_1 130 RLPDAHKGAPHLRDIFYRMGFNDQEIVAL-SGAHTIGRCHP 169
                3478888999******************8.79********5 PP

  == domain 3    score: 12.7 bits;  conditional E-value: 1.3e-06
  TIGR00198 296 sglevvwtttptkfdnnyleilfkyewelkkspagaiqfeavdakeiikdaedpnkkrkpimlvadlalrfdpefekisrrfleepeefeeafakawfklt 396
                sg+++ wt++p kfdn y+  + + +w      a + qfe++d                 +ml +dlal  d  f k  + +  + + f + fa a+ kl 
  MMETSP1137-20121227|628_1 172 SGFDGPWTSQPLKFDNAYFVDMVNKNWA-----AQNEQFESKDG---------------TMMLPSDLALLSDSSFAKTVHAYASDEKLFFKDFAAAFKKLQ 252
                8999999999999999999999999996.....45678877654...............579999999999999999999999999999999999998885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (596 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       102  (0.0248659); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.18s 00:00:00.63 Elapsed: 00:00:00.52
# Mc/sec: 1512.80
//
Query:       MMETSP1137-20121227|629_1  [L=436]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (436 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       114  (0.0277913); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.14s 00:00:00.43 Elapsed: 00:00:00.49
# Mc/sec: 1174.43
//
Query:       MMETSP1137-20121227|630_1  [L=386]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (386 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        87  (0.0212092); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.17s 00:00:00.43 Elapsed: 00:00:00.43
# Mc/sec: 1184.83
//
Query:       MMETSP1137-20121227|631_1  [L=546]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        9.7    3.1  10.3         18    2.2   7.2    1.4  1  TIGR00601 rad23: UV excision repair protein Rad23


Domain annotation for each model (and alignments):
>> TIGR00601  rad23: UV excision repair protein Rad23
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   7.2    0.0045        18      80     134 ..     240     296 ..     222     308 .. 0.77

  Alignments for each domain:
  == domain 1    score: 2.2 bits;  conditional E-value: 0.0045
  TIGR00601  80 vkakaaePaatpesaptptp..satpasvaekksaaPasaveeessaeeeatatale 134
                 ++ +++P+    sa+tpt   +a +a++a+ +s++Pa++++  +s+++ + + a++
  MMETSP1137-20121227|631_1 240 LSGVVGSPPYCGLSATTPTHaaTAAAATPAATPSNTPAATASATTSTPKLEPSQAES 296
                557788999999999999995444556677788999999999888888766665554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (546 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.17s 00:00:00.51 Elapsed: 00:00:00.47
# Mc/sec: 1533.32
//
Query:       MMETSP1137-20121227|632_1  [L=261]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (261 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       186  (0.0453437); expected 82.0 (0.02)
Passed bias filter:                      126  (0.0307167); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.12s 00:00:00.36 Elapsed: 00:00:00.37
# Mc/sec: 931.06
//
Query:       MMETSP1137-20121227|633_1  [L=378]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (378 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        74  (0.01804); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.16s 00:00:00.43 Elapsed: 00:00:00.42
# Mc/sec: 1187.90
//
Query:       MMETSP1137-20121227|634_1  [L=280]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (280 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        67  (0.0163335); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.12s 00:00:00.35 Elapsed: 00:00:00.35
# Mc/sec: 1055.91
//
Query:       MMETSP1137-20121227|635_1  [L=76]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (76 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        41  (0.00999512); expected 82.0 (0.02)
Passed bias filter:                       39  (0.00950756); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.11s 00:00:00.24 Elapsed: 00:00:00.25
# Mc/sec: 401.25
//
Query:       MMETSP1137-20121227|636_1  [L=114]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (114 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        29  (0.00706972); expected 82.0 (0.02)
Passed bias filter:                       27  (0.00658216); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.26
# Mc/sec: 578.72
//
Query:       MMETSP1137-20121227|637_1  [L=107]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (107 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        47  (0.0114578); expected 82.0 (0.02)
Passed bias filter:                       39  (0.00950756); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.18s 00:00:00.31 Elapsed: 00:00:00.30
# Mc/sec: 470.76
//
Query:       MMETSP1137-20121227|638_1  [L=505]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (505 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       155  (0.0377864); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.18s 00:00:00.54 Elapsed: 00:00:00.55
# Mc/sec: 1211.90
//
Query:       MMETSP1137-20121227|640_1  [L=291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (291 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        67  (0.0163335); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.16s 00:00:00.38 Elapsed: 00:00:00.30
# Mc/sec: 1280.29
//
Query:       MMETSP1137-20121227|642_1  [L=357]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (357 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        78  (0.0190151); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.17s 00:00:00.45 Elapsed: 00:00:00.39
# Mc/sec: 1208.21
//
Query:       MMETSP1137-20121227|643_1  [L=295]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.2e-19   68.3   1.1    5.8e-19   66.1   0.8    1.9  1  TIGR00692 tdh: L-threonine 3-dehydrogenase
    1.1e-10   39.1   8.7    1.6e-10   38.5   6.0    1.1  1  TIGR03366 HpnZ_proposed: putative phosphonate catabolism associated alcohol dehydrogenase
    3.3e-09   34.1   0.8    8.1e-09   32.8   0.5    1.6  1  TIGR01202 bchC: chlorophyll synthesis pathway protein BchC
      4e-08   30.5   2.6      4e-08   30.5   1.8    1.6  2  TIGR02822 adh_fam_2: zinc-binding alcohol dehydrogenase family protein
    4.4e-06   23.8   1.6      7e-06   23.2   1.1    1.3  1  TIGR03201 dearomat_had: 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase
      0.001   15.6   0.1     0.0015   15.0   0.1    1.1  1  TIGR01318 gltD_gamma_fam: glutamate synthase, small subunit
     0.0012   15.8   0.4     0.0044   13.9   0.1    2.0  2  TIGR02824 quinone_pig3: putative NAD(P)H quinone oxidoreductase, PIG3 family
     0.0014   15.5   0.0     0.0019   15.0   0.0    1.1  1  TIGR01035 hemA: glutamyl-tRNA reductase
  ------ inclusion threshold ------
       0.02   11.6   0.1      0.042   10.5   0.0    1.4  1  TIGR02823 oxido_YhdH: putative quinone oxidoreductase, YhdH/YhfP family


Domain annotation for each model (and alignments):
>> TIGR00692  tdh: L-threonine 3-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.1   0.8   1.3e-21   5.8e-19      58     337 ..      10     288 ..       5     291 .. 0.73

  Alignments for each domain:
  == domain 1    score: 66.1 bits;  conditional E-value: 1.3e-21
  TIGR00692  58 vlGhevaGevvgiGeevegvkvGdyvsaethivcGk...cvacrrG....kshvcrntkivGv.dtaGvfaeyvvvpadnifknpkdidpelaaiqeplGnavdtvles.dlaGesvlvsGaGpiGllava.....vakaaGasqvivsdkneyrlelakkvGatrvvnvakedlvkvvael.tsgeGvdvvlelsGapkaleqgldavangGrvallglpeskvtidltn.kvifkgltikGitGrklfetwykvsrliqsnkldlapiithkfkldefekgfelmrsGksGkvi 337
                v+Ghe++G+ +    + +   +G++v +e  ++cG+   c +c  G    ++h  + t ++G+  ++G++a ++ +pa+n++ +p+ ++ e aa  epl  a   v +    aG+ v+++G G +Gll +      va   G+++ i   + e       k+    + + +  d  +  ++l + +  +dvv++ +G+p+ l+ + +   + G + l +   +    d++    +   l          fe      +l+ + +ldl+p+it  ++ld   ++    r+  + kv 
  MMETSP1137-20121227|643_1  10 VVGHEFVGVCETAPAG-SEHLLGKRVVGEINVMCGNvstCSTCACGadraRNHCPTRT-VLGIlAKNGTYARFLTLPAKNLYVVPEGVSTENAAFAEPLAAACRIVEQDlVKAGDRVAIVGDGKLGLLIAEvlgrfVADRGGTRPTIFGRHPE-------KMALLSAAAAT--DQAQAESALpACAAQFDVVVDATGSPQGLDLSRQLCRPMGTLVLKSTCAAG--ADFNTaPFVIDELSSSAXSRCGPFEP---ALKLLAA-GLDLTPLITATYPLDAAADAVAKARTKGTMKVQ 288
                9*******77665555.55669*************74446666655333255655555.56653899**********************************999876541458*************986651112256666666666655444.......44433333222..2222233331456689*************************9999887765..55553146667777766666566665...4567777.9***************99999999988888875 PP

>> TIGR03366  HpnZ_proposed: putative phosphonate catabolism associated alcohol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.5   6.0   3.5e-13   1.6e-10      35     261 ..       9     225 ..       5     232 .. 0.79

  Alignments for each domain:
  == domain 1    score: 38.5 bits;  conditional E-value: 3.5e-13
  TIGR03366  35 svlGheavGevvalgseeaaavdgeklavGqRvvwsvavsCgrCerCrrgltqkCeslrkyGhesla...sgwelsGglaehvvllaGvaivavpddlpdavaapaaCatatvaaaleaagdlegrrvlvlGaGmLGLtaaaa....aeerGasrviavDpsaeRrelaaafGaealaeeeelaevrkeatdgravdvalelsGasaaveaalesldvgGvvvlvGsvaPadev 261
                +v+Ghe vG+ +    +       ++  +G+Rvv  + v Cg+ ++C       C + r   h  ++      + +G++a+ + l+a  ++  vp+ ++ + aa a   +a    ++e+    +g rv ++G G LGL  a +    +++rG +r + +  ++e+ +l  a+ a++ a+ e+    +     ++  dv+++ +G++++++ + + ++  G++vl  + a + + 
  MMETSP1137-20121227|643_1   9 GVVGHEFVGVCETAPAG-------SEHLLGKRVVGEINVMCGNVSTCSTC---ACGADRARNHCPTRtvlGILAKNGTYARFLTLPA-KNLYVVPEGVSTENAAFAEPLAAA-CRIVEQDLVKAGDRVAIVGDGKLGLLIAEVlgrfVADRGGTRPTIFGRHPEKMALLSAAAATDQAQAESALPAC-----AAQFDVVVDATGSPQGLDLSRQLCRPMGTLVLKSTCAAGADF 225
                79*******77655444.......57789*************99999865...46666666665554110556889*********98.57889*******999988764443.4566666668899***********9877542222789*****************99999999888888777776.....8899***************************98877766665 PP

>> TIGR01202  bchC: chlorophyll synthesis pathway protein BchC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.8   0.5   1.8e-11   8.1e-09      96     296 ..      70     279 ..       3     283 .. 0.81

  Alignments for each domain:
  == domain 1    score: 32.8 bits;  conditional E-value: 1.8e-11
  TIGR01202  96 vrglfGgaskrlvvaaervvrlddaleeeavll..alaatalhavagaeekv.lkdlivGhGalGrllarltvaa....GaelpvvwetkaerrdiatgyevldPekd......arrdyraiydasGdsslidtlverlakgGeivlaGfyteplafdfvpafmkelrlriaaeWqkedllavreliesGklsldklithkatasdaaeayata 296
                + +  G+ +++l  +a+++ ++ + +  e +++  +laa a  +v+  ++k+  ++ ivG+G lG l+a++  ++    G++ p+++  ++e++    + +  d ++          ++++++da+G ++ +d   +  +  G +vl        +f+ +p    el+  + ++   + +    +l+++G l+l  lit + + + aa+a a+a
  MMETSP1137-20121227|643_1  70 ILAKNGTYARFLTLPAKNLYVVPEGVSTENAAFaePLAA-ACRIVEQDLVKAgDRVAIVGDGKLGLLIAEVLGRFvadrGGTRPTIFGRHPEKMALLSAAAATDQAQAesalpaCAAQFDVVVDATGSPQGLDLSRQLCRPMGTLVLKSTCAAGADFNTAPFVIDELSSSAXSR--CGPFEPALKLLAAG-LDLTPLITATYPLDAAADAVAKA 279
                556678999*************99888777555115766.55677776555427899***********98755443334999**********98876666666655545668777899***************99999999**********99999999999999988766555..45566777788888.89999999999999999998776 PP

>> TIGR02822  adh_fam_2: zinc-binding alcohol dehydrogenase family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.5   1.8   8.7e-11     4e-08      60     224 ..      11     182 ..       7     216 .. 0.71
   2 ?   -2.2   0.0      0.78   3.5e+02     301     316 ..     263     278 ..     251     284 .. 0.78

  Alignments for each domain:
  == domain 1    score: 30.5 bits;  conditional E-value: 8.7e-11
  TIGR02822  60 pghevvgevveagaaegefavgdrv.g.iawlrrtcgvcrycrrgae...nlcpasrytgw.dadggyaeyttvpaafayrlptgyadeela...pllcagiigyrallraelpeggrlglygfggsahltaqv.....alaqgaevhvltrgaaarklalalgaasaqgaadrppepl 224
                 ghe vg+  +a+a+ +e+  g+rv g i  +     +c  c  ga+   n cp+    g   ++g ya + t+pa+  y +p g++ e+ a   pl  a  i  + l++a    g r+ + g g    l+a+v     a   g++  ++ r +  +k+al   aa++++a+ +   p 
  MMETSP1137-20121227|643_1  11 VGHEFVGVCETAPAG-SEHLLGKRVvGeINVMCGNVSTCSTCACGADrarNHCPTRTVLGIlAKNGTYARFLTLPAKNLYVVPEGVSTENAAfaePLAAACRIVEQDLVKA----GDRVAIVGDGKLGLLIAEVlgrfvADRGGTRPTIFGRHP--EKMALLSAAAATDQAQAESALPA 182
                69*****88777765.56678888733466666656677777777543339*****99996267899*******************9887655568999999999999976....566666666666555555422111555666667776665..45666556666666665555554 PP

  == domain 2    score: -2.2 bits;  conditional E-value: 0.78
  TIGR02822 301 ttheypldeadralad 316
                 t +ypld a  a+a 
  MMETSP1137-20121227|643_1 263 ITATYPLDAAADAVAK 278
                6899***999988765 PP

>> TIGR03201  dearomat_had: 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.2   1.1   1.5e-08     7e-06      57     182 ..      11     136 ..       7     172 .. 0.80

  Alignments for each domain:
  == domain 1    score: 23.2 bits;  conditional E-value: 1.5e-08
  TIGR03201  57 lGheisGrviqagagaaslvGkavivpavipcGe...celcksGkG...ticraqkmpGndlq.GGfashivvpakglcavdearlkaagleleevsvvadavttpyqaavqaglkkgdlviviGvGGvGgya 182
                +Ghe  G    a ag+++l+Gk v+    + cG+   c  c  G     + c ++ + G   + G +a  ++ pak l +v e      g+  e+ +  a+ +++  + + q  +k gd v ++G G +G   
  MMETSP1137-20121227|643_1  11 VGHEFVGVCETAPAGSEHLLGKRVVGEINVMCGNvstCSTCACGADrarNHCPTRTVLGILAKnGTYARFLTLPAKNLYVVPE------GVSTEN-AAFAEPLAAACRIVEQDLVKAGDRVAIVGDGKLGLLI 136
                7************************99999999622255555554322267877777776555699****************9......555444.5678888888888889999999999999999888654 PP

>> TIGR01318  gltD_gamma_fam: glutamate synthase, small subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.1   3.2e-06    0.0015     131     180 ..     111     165 ..      97     172 .. 0.81

  Alignments for each domain:
  == domain 1    score: 15.0 bits;  conditional E-value: 3.2e-06
  TIGR01318 131 rpdlskvkktgkrvaviGaGpaGlacadvl.....araGvkvvvfdrypeiGGll 180
                r    +++k g rva++G G  Gl  a+vl      r G++ ++f r+pe   ll
  MMETSP1137-20121227|643_1 111 RIVEQDLVKAGDRVAIVGDGKLGLLIAEVLgrfvaDRGGTRPTIFGRHPEKMALL 165
                5555688999******************99333333689**********987777 PP

>> TIGR02824  quinone_pig3: putative NAD(P)H quinone oxidoreductase, PIG3 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.1   9.7e-06    0.0044      54     147 ..      23     128 ..      19     197 .. 0.74
   2 ?   -0.7   0.0      0.26   1.2e+02     291     311 ..     258     278 ..     250     290 .. 0.80

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 9.7e-06
  TIGR02824  54 ppgaseilGLEvaGevvavgeevsk.............fkvGdrvca.LvagGgyaeyvvveakqvlpvpeglslveaAalpEtffTvwsnlfelaklkagetvLihg 147
                p+g  ++lG  v Ge+  +  +vs+                   v++ L + G ya + + +ak++  vpeg+s+++ Aa +E ++ +   ++e+  +kag++v i g
  MMETSP1137-20121227|643_1  23 PAGSEHLLGKRVVGEINVMCGNVSTcstcacgadrarnHCPTRTVLGiLAKNGTYARFLTLPAKNLYVVPEGVSTEN-AAFAEPLAAAC-RIVEQDLVKAGDRVAIVG 128
                6666666666666666655555555555444444443333334566526789*********************9865.56788776654.566667777777776654 PP

  == domain 2    score: -0.7 bits;  conditional E-value: 0.26
  TIGR02824 291 kvrpvidkvfpledaakAhel 311
                 ++p+i++++pl+ aa+A ++
  MMETSP1137-20121227|643_1 258 DLTPLITATYPLDAAADAVAK 278
                5789************99876 PP

>> TIGR01035  hemA: glutamyl-tRNA reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   4.3e-06    0.0019     166     252 ..     108     198 ..      93     206 .. 0.84

  Alignments for each domain:
  == domain 1    score: 15.0 bits;  conditional E-value: 4.3e-06
  TIGR01035 166 aAvelaekilgsLkgkkvlliGaGemaeLvakhLkek....gvkkvlilnRtyekaekLakeleeeavkle.kleealaeadivissTgape 252
                aA+ ++e+ l   +g +v ++G G+++ L+a+ L +     g ++ +i +R  ek   L       + ++e  l +  a+ d+v+ +Tg+p+
  MMETSP1137-20121227|643_1 108 AACRIVEQDLV-KAGDRVAIVGDGKLGLLIAEVLGRFvadrGGTRPTIFGRHPEKMALLSAAAATDQAQAEsALPACAAQFDVVVDATGSPQ 198
                67777777774.478999*************999765111155789*************99999988888879*****************97 PP

>> TIGR02823  oxido_YhdH: putative quinone oxidoreductase, YhdH/YhfP family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   9.1e-05     0.042      92     258 ..      72     232 ..      65     237 .. 0.69

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 9.1e-05
  TIGR02823  92 shaGGyseyarvkadwvvplPeglslkeamilGtAGfTAaLsvealekagltpeegevlVtG..AtGg.VgslavalLsklGyevvavtgkkeeeeylkelGakevisreeleeekkkplekerwagavDtvGgkvlanvlkql.ky.ggavaacGlaagaelettvlPfil 258
                +++G y+++  ++a+ +  +Peg+s+++a+      + Aa +  ++ +++l ++   v + G    G  ++ +  ++++ +G +  ++ g++ e+  l +  a++  +++  ++e++ p   ++++ +vD+ G+ +   + +ql +  g  v  +  aaga+++t  +Pf++
  MMETSP1137-20121227|643_1  72 AKNGTYARFLTLPAKNLYVVPEGVSTENAAFAE--PLAAA-C--RIVEQDLVKAGDRVAIVGdgKLGLlIAEVLGRFVADRGGTRPTIFGRHPEKMALLS--AAAATDQA--QAESALPACAAQFDVVVDATGSPQGLDLSRQLcRPmGTLVLKSTCAAGADFNT--APFVI 232
                5789***********************998643..23333.3..44444544444455555400444324455556668899999999999999877754..55555555..444589999*************9877777776244145577788889999887..47765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (295 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       142  (0.0346173); expected 82.0 (0.02)
Passed bias filter:                      112  (0.0273038); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         9  (0.00219405); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.33u 0.13s 00:00:00.46 Elapsed: 00:00:00.46
# Mc/sec: 846.45
//
Query:       MMETSP1137-20121227|644_1  [L=1103]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.7e-57  186.0   0.0    8.7e-08   29.8   0.0   11.5 12  TIGR00756 PPR: pentatricopeptide repeat domain


Domain annotation for each model (and alignments):
>> TIGR00756  PPR: pentatricopeptide repeat domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.9   0.0   0.00082       3.4       3      34 ..     302     333 ..     302     334 .. 0.96
   2 !   25.1   0.0   6.5e-10   2.7e-06       1      35 []     335     369 ..     335     369 .. 0.98
   3 !   17.0   0.0   2.5e-07     0.001       2      35 .]     397     430 ..     396     430 .. 0.97
   4 !   27.0   0.0   1.6e-10   6.6e-07       1      35 []     431     465 ..     431     465 .. 0.97
   5 !   29.8   0.0   2.1e-11   8.7e-08       1      35 []     466     500 ..     466     500 .. 0.97
   6 !   12.2   0.0   8.4e-06     0.034       1      34 [.     501     534 ..     501     535 .. 0.94
   7 !    7.9   0.0   0.00019      0.77       5      27 ..     769     791 ..     765     798 .. 0.86
   8 !    8.3   0.0   0.00014      0.59      19      34 ..     891     906 ..     887     907 .. 0.90
   9 !   23.8   0.0   1.6e-09   6.7e-06       2      34 ..     909     941 ..     908     942 .. 0.96
  10 ?   -2.4   0.0      0.35   1.4e+03      13      26 ..     955     968 ..     950     973 .. 0.80
  11 !   12.7   0.0   5.6e-06     0.023       2      34 ..     985    1017 ..     984    1018 .. 0.85
  12 ?   -1.6   0.0      0.19     8e+02      19      29 ..    1041    1051 ..    1039    1056 .. 0.79

  Alignments for each domain:
  == domain 1    score: 5.9 bits;  conditional E-value: 0.00082
  TIGR00756   3 yntlisglckagrveeAlelfdeMkergivPd 34 
                +n l + l+ ag+++ A  lf+ M+++g++P+
  MMETSP1137-20121227|644_1 302 CNHLFRVLGDAGQLSAAQTLFKCMLAAGLEPT 333
                799****************************7 PP

  == domain 2    score: 25.1 bits;  conditional E-value: 6.5e-10
  TIGR00756   1 vtyntlisglckagrveeAlelfdeMkergivPda 35 
                vty tli   +++++++ A+ +++eM++rg++Pda
  MMETSP1137-20121227|644_1 335 VTYGTLIARAGQWRQPRLAVAFYREMQRRGVEPDA 369
                7********************************96 PP

  == domain 3    score: 17.0 bits;  conditional E-value: 2.5e-07
  TIGR00756   2 tyntlisglckagrveeAlelfdeMkergivPda 35 
                t++++i+ +++  +veeA+e+++++++++++P+a
  MMETSP1137-20121227|644_1 397 TFSIMIHLCARLVKVEEAFEWLHKLESAKLKPNA 430
                9*******************************96 PP

  == domain 4    score: 27.0 bits;  conditional E-value: 1.6e-10
  TIGR00756   1 vtyntlisglckagrveeAlelfdeMkergivPda 35 
                v+y++l++++++ag++e ++ ++ eM++r ++P++
  MMETSP1137-20121227|644_1 431 VIYSALLNACGRAGQLERGFAILAEMERRRLSPNV 465
                68*******************************96 PP

  == domain 5    score: 29.8 bits;  conditional E-value: 2.1e-11
  TIGR00756   1 vtyntlisglckagrveeAlelfdeMkergivPda 35 
                vt++tli++++k g+++ A  lf++M+++g+ P+a
  MMETSP1137-20121227|644_1 466 VTFTTLIDACAKGGQLRRATALFRRMLACGVAPNA 500
                79*******************************96 PP

  == domain 6    score: 12.2 bits;  conditional E-value: 8.4e-06
  TIGR00756   1 vtyntlisglckagrveeAlelfdeMkergivPd 34 
                +t+ +l +g+  +g+v  A+e++  Mk+ g++P+
  MMETSP1137-20121227|644_1 501 ITCHALFHGCLAQGDVLSAREVLAYMKSIGLKPS 534
                69*************************9999987 PP

  == domain 7    score: 7.9 bits;  conditional E-value: 0.00019
  TIGR00756   5 tlisglckagrveeAlelfdeMk 27 
                 lis++++a++ e A++l+ + +
  MMETSP1137-20121227|644_1 769 QLISACAEARDAEAAMKLYALVQ 791
                69*****************8765 PP

  == domain 8    score: 8.3 bits;  conditional E-value: 0.00014
  TIGR00756  19 AlelfdeMkergivPd 34 
                ++++f eM+++g+vPd
  MMETSP1137-20121227|644_1 891 VFKIFGEMRASGVVPD 906
                789************9 PP

  == domain 9    score: 23.8 bits;  conditional E-value: 1.6e-09
  TIGR00756   2 tyntlisglckagrveeAlelfdeMkergivPd 34 
                ++n+li++++k g+v  A+  f eM ++gi+Pd
  MMETSP1137-20121227|644_1 909 AFNALINACAKVGDVPRAEGAFTEMAAAGIEPD 941
                69******************************9 PP

  == domain 10    score: -2.4 bits;  conditional E-value: 0.35
  TIGR00756  13 agrveeAlelfdeM 26 
                 g v  A++++ eM
  MMETSP1137-20121227|644_1 955 GGXVAQAERIWLEM 968
                577889******** PP

  == domain 11    score: 12.7 bits;  conditional E-value: 5.6e-06
  TIGR00756    2 tyntlisglckagrveeAlelfdeMkergivPd 34  
                 +y  l+ +  ka ++  +lel+deM++rg++P+
  MMETSP1137-20121227|644_1  985 CYAHLMTANRKASNITRVLELLDEMQARGLSPT 1017
                 5666666667999*******************8 PP

  == domain 12    score: -1.6 bits;  conditional E-value: 0.19
  TIGR00756   19 AlelfdeMker 29  
                 +l l+d+M++r
  MMETSP1137-20121227|644_1 1041 GLALYDKMVSR 1051
                 5789****997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1103 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       104  (0.0253535); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.61u 0.14s 00:00:00.75 Elapsed: 00:00:00.74
# Mc/sec: 1967.35
//
Query:       MMETSP1137-20121227|645_1  [L=175]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (175 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        45  (0.0109703); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.11s 00:00:00.28 Elapsed: 00:00:00.28
# Mc/sec: 824.93
//
Query:       MMETSP1137-20121227|646_1  [L=226]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (226 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        77  (0.0187713); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.13s 00:00:00.33 Elapsed: 00:00:00.36
# Mc/sec: 828.60
//
Query:       MMETSP1137-20121227|647_1  [L=103]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (103 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       177  (0.0431497); expected 82.0 (0.02)
Passed bias filter:                      125  (0.0304729); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.18s 00:00:00.32 Elapsed: 00:00:00.34
# Mc/sec: 399.85
//
Query:       MMETSP1137-20121227|648_1  [L=138]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (138 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       101  (0.0246221); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.11s 00:00:00.26 Elapsed: 00:00:00.33
# Mc/sec: 551.95
//
Query:       MMETSP1137-20121227|649_1  [L=281]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (281 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        64  (0.0156021); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.17s 00:00:00.42 Elapsed: 00:00:00.57
# Mc/sec: 639.46
//
Query:       MMETSP1137-20121227|650_1  [L=83]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (83 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        19  (0.00463189); expected 82.0 (0.02)
Passed bias filter:                       19  (0.00463189); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.13s 00:00:00.26 Elapsed: 00:00:00.27
# Mc/sec: 405.74
//
Query:       MMETSP1137-20121227|651_1  [L=455]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (455 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        62  (0.0151146); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.18s 00:00:00.50 Elapsed: 00:00:00.38
# Mc/sec: 1580.40
//
Query:       MMETSP1137-20121227|652_1  [L=587]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (587 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        87  (0.0212092); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.14s 00:00:00.52 Elapsed: 00:00:00.34
# Mc/sec: 2278.75
//
Query:       MMETSP1137-20121227|653_1  [L=214]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.1e-11   40.6   0.0    5.6e-11   40.2   0.0    1.2  1  TIGR00052 TIGR00052: nudix-type nucleoside diphosphatase, YffH/AdpP family
    1.4e-08   32.7   0.0    1.9e-08   32.2   0.0    1.3  1  TIGR00586 mutt: mutator mutT protein
    3.4e-06   24.5   0.0    4.8e-06   24.1   0.0    1.4  1  TIGR02705 nudix_YtkD: nucleoside triphosphatase YtkD


Domain annotation for each model (and alignments):
>> TIGR00052  TIGR00052: nudix-type nucleoside diphosphatase, YffH/AdpP family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.2   0.0   4.1e-14   5.6e-11      28     173 ..      45     189 ..      22     202 .. 0.73

  Alignments for each domain:
  == domain 1    score: 40.2 bits;  conditional E-value: 4.1e-14
  TIGR00052  28 fkdeestkkkr.eilkrgdaaavllydk...kkdsvvlvkQfRiaayarreefksdqllelvaglvekaeslEdvarrEaiEEaGyqvknlkkils.lysspGgvselihlfvaEvdknqkagig...GgvdeeeievlelvksqAlefikegk 173
                +k ++ t+ +r e  +  da+a+l+  k   k+ +++lv+QfR+ + a          lel aglv+ +e + + a+rE  EE+Gy  + ++ + s +  spG++ e i++    vd ++  +      + d+e+i v  ++ s+  + +k+ +
  MMETSP1137-20121227|653_1  45 RKWDMATRATRqEAKDAVDAVAILALLKapgKETEILLVRQFRPPVNA--------VTLELPAGLVDAGETPSQAALRELKEETGYT-GTIQDCSStVALSPGLTNESIQIVTVSVDLTTPENSNpqqALEDTEDIDVRRVKLSELTQTLKDAQ 189
                45555666555267778899999887543348899*********8743........4589**************************7.778888762567*****************9998776511145555555555555555555555544 PP

>> TIGR00586  mutt: mutator mutT protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.2   0.0   1.4e-11   1.9e-08      16      83 ..      77     146 ..      64     190 .. 0.72

  Alignments for each domain:
  == domain 1    score: 32.2 bits;  conditional E-value: 1.4e-11
  TIGR00586  16 nneifitrraadadlanklefPGGkieaGetpeqavvrelqeevgit..aqhfelfekleyeypqkkltl 83 
                + ei++ r+      a  le P G ++aGetp qa  rel+ee g t   q  ++   l     ++ +++
  MMETSP1137-20121227|653_1  77 ETEILLVRQFRPPVNAVTLELPAGLVDAGETPSQAALRELKEETGYTgtIQDCSSTVALSPGLTNESIQI 146
                56888989888889999***************************98721455555555555555555444 PP

>> TIGR02705  nudix_YtkD: nucleoside triphosphatase YtkD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.1   0.0   3.5e-09   4.8e-06      46      74 ..      94     122 ..      37     129 .. 0.93

  Alignments for each domain:
  == domain 1    score: 24.1 bits;  conditional E-value: 3.5e-09
  TIGR02705  46 GlefPGGkveegetskeaaiRevleetGa 74 
                 le P G v+ get+ +aa Re++eetG 
  MMETSP1137-20121227|653_1  94 TLELPAGLVDAGETPSQAALRELKEETGY 122
                58*************************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (214 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       101  (0.0246221); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.16u 0.23s 00:00:00.39 Elapsed: 00:00:00.35
# Mc/sec: 807.02
//
Query:       MMETSP1137-20121227|654_1  [L=100]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-38  128.4   1.1    1.5e-38  128.3   0.8    1.0  1  TIGR02008 fdx_plant: ferredoxin [2Fe-2S]
    1.1e-13   48.6   0.5    1.2e-13   48.4   0.3    1.0  1  TIGR02160 PA_CoA_Oxy5: phenylacetate-CoA oxygenase/reductase, PaaK subunit
    0.00025   17.9   0.0    0.00027   17.8   0.0    1.0  1  TIGR01941 nqrF: NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit


Domain annotation for each model (and alignments):
>> TIGR02008  fdx_plant: ferredoxin [2Fe-2S]
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  128.3   0.8   1.1e-41   1.5e-38       2      95 ..       3      95 ..       2      97 .. 0.97

  Alignments for each domain:
  == domain 1    score: 128.3 bits;  conditional E-value: 1.1e-41
  TIGR02008  2 sykvklvnedgseetievpddeyildaaeeeGidlpyscraGacstcaGkvkeGtvdqsdqsfldddqleegyvltcvayptsdvkiethkeee 95
                y+++++++dg e+ + +pd eyild+ ee+G+d+p scraGac  c Gk+ +Gtvd sd sfldd+q +egyvl c+ayptsd+++ethk+e 
  MMETSP1137-20121227|654_1  3 DYSITVLTPDG-ESAFSCPDSEYILDKGEEAGVDMPSSCRAGACCECIGKILSGTVDDSDASFLDDNQKAEGYVLLCTAYPTSDLTVETHKKES 95
               699********.99*****************************************************************************996 PP

>> TIGR02160  PA_CoA_Oxy5: phenylacetate-CoA oxygenase/reductase, PaaK subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.4   0.3     9e-17   1.2e-13     267     347 ..       9      87 ..       2      91 .. 0.86

  Alignments for each domain:
  == domain 1    score: 48.4 bits;  conditional E-value: 9e-17
  TIGR02160 267 vtldGlsreislsaedesvldaalraradlPfackgGvcgtcrakvleGkvemeknyalepdevdaGyvltcqarPlsdkl 347
                +t dG s    +  + e +ld    a++d+P +c++G c+ c  k+l G v+      l+ ++ + Gyvl c a+P sd  
  MMETSP1137-20121227|654_1   9 LTPDGES--AFSCPDSEYILDKGEEAGVDMPSSCRAGACCECIGKILSGTVDDSDASFLDDNQKAEGYVLLCTAYPTSDLT 87 
                3568877..444567789***********************************99999******************98743 PP

>> TIGR01941  nqrF: NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.0     2e-07   0.00027      38     121 ..      11      91 ..       1      99 [. 0.84

  Alignments for each domain:
  == domain 1    score: 17.8 bits;  conditional E-value: 2e-07
  TIGR01941  38 ddeeksltveaGdkllntlaskgifissacGGggscgqcrvrvvegggeilptekshiskreakegwrlscqvkvkedlelele 121
                 d e ++  +  + +l+  ++ g+ ++s+c  g+ c  c  ++ +g+ +  +++ s++  +++ eg+ l c +   +dl +e +
  MMETSP1137-20121227|654_1  11 PDGESAFSCPDSEYILDKGEEAGVDMPSSCRAGA-CCECIGKILSGTVD--DSDASFLDDNQKAEGYVLLCTAYPTSDLTVETH 91 
                3578999999999*****************9876.55799999988765..899*******************99999999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (100 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        77  (0.0187713); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.10u 0.21s 00:00:00.31 Elapsed: 00:00:00.42
# Mc/sec: 314.26
//
Query:       MMETSP1137-20121227|655_1  [L=2314]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (2314 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       125  (0.0304729); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 1.17u 0.38s 00:00:01.54 Elapsed: 00:00:01.40
# Mc/sec: 2181.59
//
Query:       MMETSP1137-20121227|656_1  [L=207]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.031   10.4   0.9      0.033   10.3   0.6    1.1  1  TIGR01058 parE_Gpos: DNA topoisomerase IV, B subunit


Domain annotation for each model (and alignments):
>> TIGR01058  parE_Gpos: DNA topoisomerase IV, B subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.6   8.2e-06     0.033     348     411 ..      85     147 ..      14     161 .. 0.76

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 8.2e-06
  TIGR01058 348 vvdeivedklaffleenkeeakllvkkaikardakeaakkareekksvkkkkkekgllsGkltp 411
                 v++ v+ +    + +++ ea l  +k   ar+a+e ak a+  kk+ kkk k+kg+ + +  p
  MMETSP1137-20121227|656_1  85 XVESRVAGNXYEVV-QEDPEALLAWQKERDARQAQEDAKAAKRRKKRDKKKGKDKGIQAQQNDP 147
                44445555444333.44567888899999**************************987766666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (207 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       178  (0.0433935); expected 82.0 (0.02)
Passed bias filter:                       98  (0.0238908); expected 82.0 (0.02)
Passed Vit filter:                        20  (0.00487567); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.22u 0.16s 00:00:00.38 Elapsed: 00:00:00.38
# Mc/sec: 718.99
//
Query:       MMETSP1137-20121227|657_1  [L=122]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (122 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        55  (0.0134081); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.16s 00:00:00.31 Elapsed: 00:00:00.31
# Mc/sec: 519.44
//
Query:       MMETSP1137-20121227|658_1  [L=478]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (478 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        62  (0.0151146); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.16s 00:00:00.47 Elapsed: 00:00:00.49
# Mc/sec: 1287.57
//
Query:       MMETSP1137-20121227|660_1  [L=100]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.017   12.5   0.2        3.6    4.9   0.0    2.8  3  TIGR01007 eps_fam: capsular exopolysaccharide family


Domain annotation for each model (and alignments):
>> TIGR01007  eps_fam: capsular exopolysaccharide family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.0    0.0021       8.5      36      49 ..       3      16 ..       1      31 [. 0.80
   2 ?    1.3   0.0     0.011        45      37      57 ..      41      62 ..      23      74 .. 0.78
   3 ?    4.9   0.0   0.00088       3.6      32      49 ..      73      90 ..      62      97 .. 0.78

  Alignments for each domain:
  == domain 1    score: 3.7 bits;  conditional E-value: 0.0021
  TIGR01007 36 aniavafaqaGykt 49
               +n a+afa+aG++ 
  MMETSP1137-20121227|660_1  3 SNTAWAFAKAGHRS 16
               699********996 PP

  == domain 2    score: 1.3 bits;  conditional E-value: 0.011
  TIGR01007 37 niavafaqaGykt.LliDgDlr 57
                 a+afa aG++   l D+  r
  MMETSP1137-20121227|660_1 41 MXAWAFATAGHRSpXLFDALAR 62
               569*******986356676665 PP

  == domain 3    score: 4.9 bits;  conditional E-value: 0.00088
  TIGR01007 32 stvsaniavafaqaGykt 49
               +   +n a+afa+aG++ 
  MMETSP1137-20121227|660_1 73 TQSLSNTAWAFAKAGHRS 90
               556689*********986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (100 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        65  (0.0158459); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.17u 0.18s 00:00:00.35 Elapsed: 00:00:00.61
# Mc/sec: 216.38
//
Query:       MMETSP1137-20121227|661_1  [L=199]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.7e-05   21.4   0.0    4.1e-05   20.8   0.0    1.3  1  TIGR01983 UbiG: 3-demethylubiquinone-9 3-O-methyltransferase
    4.2e-05   21.3   0.0      7e-05   20.6   0.0    1.3  1  TIGR02072 BioC: biotin biosynthesis protein BioC
    8.3e-05   19.9   0.0    9.3e-05   19.8   0.0    1.2  1  TIGR02021 BchM-ChlM: magnesium protoporphyrin O-methyltransferase
    0.00069   16.8   0.0     0.0018   15.5   0.0    1.7  1  TIGR01934 MenG_MenH_UbiE: ubiquinone/menaquinone biosynthesis methyltransferase
  ------ inclusion threshold ------
      0.024   10.9   0.0      0.031   10.6   0.0    1.1  1  TIGR04074 bacter_Hen1: 3' terminal RNA ribose 2'-O-methyltransferase Hen1


Domain annotation for each model (and alignments):
>> TIGR01983  UbiG: 3-demethylubiquinone-9 3-O-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   0.0     5e-08   4.1e-05      50     129 ..      52     132 ..      15     165 .. 0.73

  Alignments for each domain:
  == domain 1    score: 20.8 bits;  conditional E-value: 5e-08
  TIGR01983  50 glkvlDvGcGgGllseslarlgae.vtgiDlseelievAklhakkdplkkieyelksveelaeee.kesfDvvlamEvlEHv 129
                +  +l+vGcG+  ls+ +   g++ +t+ D+s+e+i++A +     +    +y ++++  l+++  +++f +v+    ++ +
  MMETSP1137-20121227|661_1  52 SAPILEVGCGSSPLSQCMYADGWTnITACDISKEAIRAAIQRWPYAQGG-PKYVVADARSLTKSFgESQFSIVIDKGTVDAI 132
                6789******************988**************8876665553.67888888888777547778888766555554 PP

>> TIGR02072  BioC: biotin biosynthesis protein BioC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   0.0   8.5e-08     7e-05      33     136 ..      50     165 ..      36     170 .. 0.78

  Alignments for each domain:
  == domain 1    score: 20.6 bits;  conditional E-value: 8.5e-08
  TIGR02072  33 fepakvLdiGcGtGiltrallkrfpqaelialDiseemleqakkkls....nvqficgdieklp..lekks.........fDlivSnlalQWlddlsevlaelarvlkpgGllafstfg 136
                   a +L++GcG+  l++ + +   ++ ++a Dis+e ++ a ++ +      +++ +d+++l   + +++         +D i ++ a  W  +l+ v ++la+vlk gG  ++ ++ 
  MMETSP1137-20121227|661_1  50 PFSAPILEVGCGSSPLSQCMYADGWTN-ITACDISKEAIRAAIQRWPyaqgGPKYVVADARSLTksFGESQfsividkgtVDAIACSEA--WDYELELVARQLASVLKAGGTWLCISLT 165
                44589*************999998888.9**************9999999966788888877642144444666666666999999998..99999999************98876665 PP

>> TIGR02021  BchM-ChlM: magnesium protoporphyrin O-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   0.0   1.1e-07   9.3e-05      54     119 ..      51     115 ..       9     155 .. 0.82

  Alignments for each domain:
  == domain 1    score: 19.8 bits;  conditional E-value: 1.1e-07
  TIGR02021  54 kGkkvlDAGCGtGllsielAkrG.aivkavDiseklvelarkraekedeaenveFevndleslegkf 119
                    +l+ GCG+  ls  + ++G  +++a Dis++ +  a +r + ++  + ++++v d +sl+  f
  MMETSP1137-20121227|661_1  51 FSAPILEVGCGSSPLSQCMYADGwTNITACDISKEAIRAAIQRWPYAQ--GGPKYVVADARSLTKSF 115
                556799**********98877773689*****************9998..89**********99877 PP

>> TIGR01934  MenG_MenH_UbiE: ubiquinone/menaquinone biosynthesis methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   2.2e-06    0.0018      24     110 ..      36     123 ..      26     176 .. 0.75

  Alignments for each domain:
  == domain 1    score: 15.5 bits;  conditional E-value: 2.2e-06
  TIGR01934  24 drlWkkkavkkieeekeekvlDvatGtGdlaielakkaeakvtgvDlseemLevakkkakekeeanvefieadaeeLp..fednsfdav 110
                d   k+ +  ++++  ++ +l v +G+  l+  +     +++t++D+s+e ++ a ++ +  +    ++++ada +L   f +++f++v
  MMETSP1137-20121227|661_1  36 DSELKELMHGTLGAPFSAPILEVGCGSSPLSQCMYADGWTNITACDISKEAIRAAIQRWPYAQ-GGPKYVVADARSLTksFGESQFSIV 123
                55555666666666677889**********988888777*******************98764.6789********9766888888876 PP

>> TIGR04074  bacter_Hen1: 3' terminal RNA ribose 2'-O-methyltransferase Hen1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   3.8e-05     0.031     276     329 ..      45      97 ..       8     104 .. 0.79

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 3.8e-05
  TIGR04074 276 aalresgarsvlDlGcGegkLlkaLlaekqfekivgvdvsareLekakrrlkld 329
                 +l +  +  +l++GcG++ L + + a+   ++i+++d+s +++++a +r  + 
  MMETSP1137-20121227|661_1  45 GTLGAPFSAPILEVGCGSSPLSQCMYAD-GWTNITACDISKEAIRAAIQRWPYA 97 
                55566666789********998776665.7899**************9997665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (199 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       109  (0.0265724); expected 82.0 (0.02)
Passed bias filter:                      109  (0.0265724); expected 82.0 (0.02)
Passed Vit filter:                        18  (0.0043881); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.23u 0.15s 00:00:00.38 Elapsed: 00:00:00.30
# Mc/sec: 875.53
//
Query:       MMETSP1137-20121227|663_1  [L=448]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (448 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       229  (0.0558264); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.14s 00:00:00.48 Elapsed: 00:00:00.35
# Mc/sec: 1689.46
//
Query:       MMETSP1137-20121227|664_1  [L=131]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (131 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       188  (0.0458313); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.16s 00:00:00.32 Elapsed: 00:00:00.31
# Mc/sec: 557.76
//
Query:       MMETSP1137-20121227|665_1  [L=202]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.5e-23   79.4   0.0    6.6e-23   79.1   0.0    1.1  1  TIGR00231 small_GTP: small GTP-binding protein domain
     0.0016   15.1   0.1     0.0024   14.6   0.1    1.2  1  TIGR00959 ffh: signal recognition particle protein


Domain annotation for each model (and alignments):
>> TIGR00231  small_GTP: small GTP-binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.1   0.0   3.2e-26   6.6e-23       2     149 ..      38     181 ..      37     193 .. 0.84

  Alignments for each domain:
  == domain 1    score: 79.1 bits;  conditional E-value: 3.2e-26
  TIGR00231   2 keikivivGhvdvGKstLlnsllknkisiteskpgvtrdyvteqieedGktykvnllDTaGqedfdairrlyvreverslevvdivilvldveeglekqtkeiiheakkkgvpiilvvnKiDlkd...dlktkvkslfaklnaep.iielsa 149
                k+++i++vG +++GK+t+l++l+  + + t + p+++++++t  +e+++  + ++++D++Gq++ ++++r+y+++++++++vvd + + ++v e+  ++     +e +  ++ +++++nK+Dl +   + +  +k  ++ l +   +i+ ++
  MMETSP1137-20121227|665_1  38 KDVRILMVGLDAAGKTTILYKLKLGE-IVTTI-PTIGFNVET--VEYKN--ISFTVWDVGGQDKIRPLWRHYYQNTQGVIFVVDSNDR-DRVGEAR-DELHRMLNEDELREAILLVFANKQDLPNamnAAEITDKLGLHSLRQRNwYIQSTC 181
                789***********************.66666.*******99..8****..77***********************************.9999999.7777777777778***************666445555555555555554665555 PP

>> TIGR00959  ffh: signal recognition particle protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.1   1.2e-06    0.0024      79     120 ..      17      60 ..      15      66 .. 0.79

  Alignments for each domain:
  == domain 1    score: 14.6 bits;  conditional E-value: 1.2e-06
  TIGR00959  79 eeLvallgee..saelklaekkpavillvGLqGsGKtttaaKla 120
                e+L+a++g +  ++  kl  kk + il+vGL  +GKtt   Kl 
  MMETSP1137-20121227|665_1  17 ERLAAIMGLTfsKVFGKLFGKKDVRILMVGLDAAGKTTILYKLK 60 
                67888888884333335667899****************99985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (202 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       185  (0.0451); expected 82.0 (0.02)
Passed bias filter:                      170  (0.0414432); expected 82.0 (0.02)
Passed Vit filter:                        20  (0.00487567); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.22u 0.19s 00:00:00.41 Elapsed: 00:00:00.30
# Mc/sec: 888.73
//
Query:       MMETSP1137-20121227|666_1  [L=181]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (181 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        53  (0.0129205); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.14s 00:00:00.32 Elapsed: 00:00:00.31
# Mc/sec: 770.65
//
Query:       MMETSP1137-20121227|668_1  [L=218]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (218 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        56  (0.0136519); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.14s 00:00:00.33 Elapsed: 00:00:00.32
# Mc/sec: 899.18
//
Query:       MMETSP1137-20121227|669_1  [L=458]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (458 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        85  (0.0207216); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.16s 00:00:00.46 Elapsed: 00:00:00.50
# Mc/sec: 1209.02
//
Query:       MMETSP1137-20121227|670_1  [L=151]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (151 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        91  (0.0221843); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.14s 00:00:00.32 Elapsed: 00:00:00.25
# Mc/sec: 797.21
//
Query:       MMETSP1137-20121227|671_1  [L=485]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (485 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        95  (0.0231594); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.16s 00:00:00.49 Elapsed: 00:00:00.41
# Mc/sec: 1561.33
//
Query:       MMETSP1137-20121227|672_1  [L=507]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (507 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       277  (0.067528); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.12s 00:00:00.47 Elapsed: 00:00:00.45
# Mc/sec: 1487.08
//
Query:       MMETSP1137-20121227|673_1  [L=137]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (137 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       100  (0.0243784); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.13s 00:00:00.30 Elapsed: 00:00:00.30
# Mc/sec: 602.75
//
Query:       MMETSP1137-20121227|674_1  [L=384]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (384 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        71  (0.0173086); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.13s 00:00:00.41 Elapsed: 00:00:00.42
# Mc/sec: 1206.76
//
Query:       MMETSP1137-20121227|675_1  [L=49]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (49 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        94  (0.0229157); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.17s 00:00:00.28 Elapsed: 00:00:00.65
# Mc/sec: 99.50
//
Query:       MMETSP1137-20121227|676_1  [L=741]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.2e-89  298.7   0.0      2e-89  298.0   0.0    1.3  1  TIGR01982 UbiB: 2-polyprenylphenol 6-hydroxylase
     0.0088   13.3   0.0      0.018   12.3   0.0    1.4  1  TIGR03724 arch_bud32: Kae1-associated kinase Bud32


Domain annotation for each model (and alignments):
>> TIGR01982  UbiB: 2-polyprenylphenol 6-hydroxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  298.0   0.0   9.9e-93     2e-89      33     427 ..     195     608 ..     174     615 .. 0.87

  Alignments for each domain:
  == domain 1    score: 298.0 bits;  conditional E-value: 9.9e-93
  TIGR01982  33 kllakvskeear..keslgerlrlaleelGPifiKlGQvlstRaDllpeeiaeeLslLqdkvppfdlkaarkvieaelgkpveelFaefeekPlAaASiaQvhkAvlvegkeVavKvlRPgiekkieadikllellaklvekllpeakrl..rptevvkefektlkeEldlrlEaanaselkenfknd..kklivPevyweltservltlewidgipvsdleklkeaGldlkalaenlvesflkqvlrdgfFHaDlHpGNilvakdgkiialDfGivgrlseeerrylaeillgfl...........erdykrvaevhleagyvpsdtdlaeleqa....iravgepivgkplkeisigklLaklfkitekfelevqpeLlLLqKtlltvEGvgrqldpdldlwkvaepvvkklik 427
                 +  k + ee++  k++ +e +r+al +lGP+f+KlGQv+stR+D+l +e+++ L+ Lqd+vp f +++a+++ieaelgkp++++F++f+e+P+AaAS++Qvh+Av  +gk Va+Kv+R g+++ +++d+k l+ l kl++k+ p++      + ++ +e +k l eE+d++lE++n+++++  +k+   ++++vP+vywe t+ rvltle++   +++dle++++aGld++ la++ + sfl+qvl+ g+FH D+HpGN  v+k+g++++ D+G++ + +++    + e  ++++            +++kr+++ +  +g++ +  d  + e+     ir++ +  +gk + +i+  +l a+l  +te+   + ++ ++++ +++  ++G+g+ ld + dl k a+p++++l+ 
  MMETSP1137-20121227|676_1 195 ASKVKGTDEEKSaaKTAVAEYIRDALFRLGPTFVKLGQVVSTRTDVLEKEYTDVLKDLQDNVPGFGGDKAKAIIEAELGKPIDQIFDSFDETPIAAASLGQVHRAV-YKGKPVAIKVQRAGLKELFDTDLKNLKVLVKLLDKFDPKSXGAdrSYADIYEESSKLLYEEIDYTLEGKNCERFASSLKEAgvDYVKVPSVYWEATTPRVLTLEFVPSLKLTDLEAVEAAGLDRQLLAKRAADSFLTQVLKTGYFHCDPHPGNFCVNKEGQLVYYDCGMMNEXQPNVAAGFKEACFAIFgggpfisdlqlAQNAKRLVNALEMMGVLAKSADRLAVEKLaryfIRTFKDVQTGKAAGNIKQ-TLGADLQALTEQQVFRFPSTFTFIFRAFASIDGIGKGLDKSYDLXKFAQPFINELTA 608
                333333333333248999***************************************************************************************6.68***********************************998755115789****************************99753389***************************************************************************************999999888888887743222223333368999****99999*999988865555531113778888888888988874.466899999*******************************************99875 PP

>> TIGR03724  arch_bud32: Kae1-associated kinase Bud32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.3   0.0   8.8e-06     0.018      33     138 ..     360     472 ..     355     481 .. 0.80

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 8.8e-06
  TIGR03724  33 pelDeklrkeRtrkEarllseakkagvntPvvydvdpeekkivmeyiegkklkdlleekel.....ell.kevGelvgklHkagivhgDlttsNiiv.kddklyliDfGLgkk 138
                +e+D  l  +   + a  l+ea    v++P vy   +    +++e + + kl dl   +        l+ +++   + ++ k+g  h D+++ N+ v k+++l+  D G+ + 
  MMETSP1137-20121227|676_1 360 EEIDYTLEGKNCERFASSLKEAGVDYVKVPSVYWEATTPRVLTLEFVPSLKLTDLEAVEAAgldrqLLAkRAADSFLTQVLKTGYFHCDPHPGNFCVnKEGQLVYYDCGMMNE 472
                5677777777777777777788778899************************998777666678853331344567899******************5578899999999765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (741 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       134  (0.032667); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.16s 00:00:00.64 Elapsed: 00:00:00.71
# Mc/sec: 1377.52
//
Query:       MMETSP1137-20121227|677_1  [L=393]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (393 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        61  (0.0148708); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.17s 00:00:00.44 Elapsed: 00:00:00.44
# Mc/sec: 1178.90
//
Query:       MMETSP1137-20121227|678_1  [L=311]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00048   15.8  24.6     0.0006   15.5  17.0    1.1  1  TIGR02168 SMC_prok_B: chromosome segregation protein SMC
     0.0011   14.6  16.5     0.0014   14.2  11.5    1.1  1  TIGR02169 SMC_prok_A: chromosome segregation protein SMC
  ------ inclusion threshold ------
      0.037   10.7  17.4       0.15    8.7   6.2    2.2  2  TIGR01000 bacteriocin_acc: bacteriocin secretion accessory protein
       0.13    9.0  22.6       0.25    8.1  15.7    1.4  1  TIGR01843 type_I_hlyD: type I secretion membrane fusion protein, HlyD family
       0.13    9.0   9.1      0.039   10.8   2.3    1.9  2  TIGR00414 serS: serine--tRNA ligase
       0.16    8.0  14.8       0.36    6.8  10.2    1.6  1  TIGR03007 pepcterm_ChnLen: polysaccharide chain length determinant protein, PEP-CTERM locus subfamily
       0.22    8.4   3.1       0.67    6.9   0.2    2.1  2  TIGR00219 mreC: rod shape-determining protein MreC
        0.3    7.3  15.9        0.5    6.6  11.0    1.2  1  TIGR03185 DNA_S_dndD: DNA sulfur modification protein DndD
       0.72    6.7  16.8       0.37    7.6   2.0    2.7  2  TIGR01010 BexC_CtrB_KpsE: polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family
          1    4.8  23.9       0.79    5.2  15.5    1.4  1  TIGR02680 TIGR02680: TIGR02680 family protein
        2.6    3.9   6.2        3.4    3.5   4.3    1.1  1  TIGR03683 A-tRNA_syn_arch: alanine--tRNA ligase
        7.6    2.1  19.0       0.25    7.0   8.2    1.5  1  TIGR03348 VI_IcmF: type VI secretion protein IcmF
        7.9    2.1  19.5        1.8    4.2   6.9    2.1  2  TIGR03480 HpnN: hopanoid biosynthesis associated RND transporter like protein HpnN


Domain annotation for each model (and alignments):
>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5  17.0   1.9e-06    0.0006     679     851 ..       3     174 ..       1     180 [. 0.62

  Alignments for each domain:
  == domain 1    score: 15.5 bits;  conditional E-value: 1.9e-06
  TIGR02168 679 keieeleeeieeleekiaelekelkelekeleeleeeleklrkeleelerklselkkelerleke.veqleerlaqlekeleeleeereeleeeleeaeeelkeaeeeieeleaeieqlkeelkalrealse.leaeltelkeeaaekeerleslekeiaalekeleeleeqiee 851
                +e++ ++ee ++l+ ++a l+++++ + +++e+++ e+ +lr++l+e + + s++ ++l+++ ++   ql+e ++ ++   ++l++e+++l+++l+e ++ + ++++ ++ + a+++++ +e+ al +a+++ +eae+ +lk+e+a++e+++ sl++ ++    e+ +l++q+ee
  MMETSP1137-20121227|678_1   3 RELAAAKEEAKALATEAAGLRAAVAGTTTRTESMQAEIGQLRSQLQEVTASKSATATSLSNEMTKlKSQLAEAASAKSTMAANLQAEIAQLRSQLAEVTSSATATSSGMQGEIARLTAQLDEARALGSAVKAsAEAEVAKLKSELANAESAQLSLTASMQ---GEIAQLRSQLEE 174
                5677777777777777777777777777777777777777777777777777777777665544414456666666666667777777777777777777777777777777777777777777776666531566666777777776665554444433...333333333333 PP

>> TIGR02169  SMC_prok_A: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2  11.5   4.4e-06    0.0014     366     531 ..       4     168 ..       1     179 [. 0.48

  Alignments for each domain:
  == domain 1    score: 14.2 bits;  conditional E-value: 4.4e-06
  TIGR02169 366 eleelraeleevdkeaaelreelkelkekleklkeelnelkreldrlleelkrleeelaelkaelerieekiaeleeeleelaeeikkaeqkl.eqlkedlekaekelrklkeeleklekelselerelaeleaqakaseeesreskaveevlkasie.GvlGtvaqL 531
                el++ ++e++++++eaa lr++++   ++ e+++ e+ +l+   ++l+e    +++    l +e++++++++ae ++++ ++a++++++  +l +ql+e  ++a +  +  + e+++l  +l e++   ++++a+a+a   + +++ a+ e  + s+   + G +aqL
  MMETSP1137-20121227|678_1   4 ELAAAKEEAKALATEAAGLRAAVAGTTTRTESMQAEIGQLR---SQLQEVTASKSATATSLSNEMTKLKSQLAEAASAKSTMAANLQAEIAQLrSQLAEVTSSATATSSGMQGEIARLTAQLDEARALGSAVKASAEAEVAKLKSELANAESAQLSLTaSMQGEIAQL 168
                34444555555555555555555555555555555555555...5555555555555555555555555555555555555555555544443134555555555555555555555555555555555555554444433333333333322222222344444444 PP

>> TIGR01000  bacteriocin_acc: bacteriocin secretion accessory protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   6.2   0.00047      0.15     236     316 ..      23     103 ..       6     111 .. 0.78
   2 ?    8.1   5.0    0.0007      0.22     232     315 ..      76     162 ..      73     178 .. 0.74

  Alignments for each domain:
  == domain 1    score: 8.7 bits;  conditional E-value: 0.00047
  TIGR01000 236 sqilasvqqqidqLkkeiesyevqkakltksdalsassqseklaslkeqqlakvkkelteleqklkeleakikslkedsqk 316
                 +++a +    +++++ei + ++q +++t+s+   a s s+ + +lk+q   ++  + t +++ + e+    ++l e +++
  MMETSP1137-20121227|678_1  23 RAAVAGTTTRTESMQAEIGQLRSQLQEVTASKSATATSLSNEMTKLKSQLAEAASAKSTMAANLQAEIAQLRSQLAEVTSS 103
                46889999999**********************99999*********9988888777777776666666666665555443 PP

  == domain 2    score: 8.1 bits;  conditional E-value: 0.0007
  TIGR01000 232 eqvksqilasvqqqidqLkkeiesyevqkakltksda...lsassqseklaslkeqqlakvkkelteleqklkeleakikslkedsq 315
                +++ks++ a++q++i+qL+++++++ +      +  +        q +  + l +   a+++ e+ +l+++l ++e+ + sl+  +q
  MMETSP1137-20121227|678_1  76 ASAKSTMAANLQAEIAQLRSQLAEVTSSATATSSGMQgeiARLTAQLDEARALGSAVKASAEAEVAKLKSELANAESAQLSLTASMQ 162
                578899999999999999999988876544333222223445666777777788888889999999999999999999888877665 PP

>> TIGR01843  type_I_hlyD: type I secretion membrane fusion protein, HlyD family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1  15.7   0.00079      0.25      82     235 ..      18     171 ..       2     180 .. 0.65

  Alignments for each domain:
  == domain 1    score: 8.1 bits;  conditional E-value: 0.00079
  TIGR01843  82 daaelesqvlaleaevarlraeanseeaiefpdillsae.d..avaelvkeqeslfesrksalraqlesleaqikqleaeleglqaqlqalrqqleliseelealrkLkekglvsrlelLelereraelqgelaeleaeleklkaeldeleeklqel 235
                +aa l++ v++ +++ + ++ae+ +  +  +++  +s+      + + +++ +s++ + +sa + + ++l+a+i+ql+++l+++++ ++a ++ ++   e ++ + +L e  +   +   ++e e+a+l++ela++e+ + +l a ++   ++l+++
  MMETSP1137-20121227|678_1  18 EAAGLRAAVAGTTTRTESMQAEIGQLRSQ-LQEVTASKSaTatSLSNEMTKLKSQLAEAASAKSTMAANLQAEIAQLRSQLAEVTSSATATSSGMQG--EIARLTAQLDEARALGSAVKASAEAEVAKLKSELANAESAQLSLTASMQGEIAQLRSQ 171
                34444555555555555555554444432.2222222222235788888888888888899999999999999999999999999988888777765..5666677899999888888889999999999999998887655544443333322222 PP

>> TIGR00414  serS: serine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   2.3   0.00012     0.039      33     106 ..      20      93 ..       2     114 .. 0.70
   2 ?    2.1   0.4     0.053        17      12      86 ..      98     173 ..      92     179 .. 0.49

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 0.00012
  TIGR00414  33 selddklkkllskieelqkkrnelskeigkkkaekkdkieelkkelkelkeeleeleaelkeleeeleekllki 106
                  l +++  +++++e++q++  +l +++++ +a+k++++ +l++e+++lk++l+e+ ++ +++ ++l+  + ++
  MMETSP1137-20121227|678_1  20 AGLRAAVAGTTTRTESMQAEIGQLRSQLQEVTASKSATATSLSNEMTKLKSQLAEAASAKSTMAANLQAEIAQL 93 
                45556667788899999999999999999999999988889999999999999998877665555554443332 PP

  == domain 2    score: 2.1 bits;  conditional E-value: 0.053
  TIGR00414  12 elvkeklkarglsveidleklselddklkkllskie.elqkkrnelskeigkkkaekkdkieelkkelkelkeele 86 
                ++v ++ +a    ++ ++ +l+++ d+ ++l s ++ +++++  +l++e+++++  + + +++++ e+ +l+++le
  MMETSP1137-20121227|678_1  98 AEVTSSATATSSGMQGEIARLTAQLDEARALGSAVKaSAEAEVAKLKSELANAESAQLSLTASMQGEIAQLRSQLE 173
                4444444444444555555555555555555555441233555555555555555555555555555555555555 PP

>> TIGR03007  pepcterm_ChnLen: polysaccharide chain length determinant protein, PEP-CTERM locus subfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8  10.2    0.0011      0.36     200     344 ..      34     176 ..       4     181 .. 0.60

  Alignments for each domain:
  == domain 1    score: 6.8 bits;  conditional E-value: 0.0011
  TIGR03007 200 gdyyeelkeaeeeLeearlelkeakaqrdalkrqlageepvllaeesvasseldsriealekqLdeLrlrYtdkhPdviavkreiaeLeerkeeelegeksgseeessanpvyqqlqielaeaeaei....aslearvaelearierle 344
                + + +e+ +++ +L+e+ + +  + +++    ++l+++   + +++s++  +l+ +i++l+ qL e+  + t      + ++ eia L ++  e+   ++ gs+ ++sa+  + +l++ela+ae       as++ + a+l++++e+ +
  MMETSP1137-20121227|678_1  34 ESMQAEIGQLRSQLQEVTASKSATATSLSNEMTKLKSQLAEAASAKSTMAANLQAEIAQLRSQLAEVTSSATATS---SGMQGEIARLTAQLDEA---RALGSAVKASAEAEVAKLKSELANAESAQlsltASMQGEIAQLRSQLEEAR 176
                334555566666666665555554444444333355555555555788888888888888888888888888875...56677888888886554...444444444444456778888888775440112455555555555555544 PP

>> TIGR00219  mreC: rod shape-determining protein MreC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   0.2    0.0021      0.67      60     122 ..      25      90 ..      14     138 .. 0.64
   2 ?    2.2   0.1     0.057        18      71     113 ..     136     178 ..     128     180 .. 0.80

  Alignments for each domain:
  == domain 1    score: 6.9 bits;  conditional E-value: 0.0021
  TIGR00219  60 gisenlkdlnkleleNkklrqellkknaqlelltqelkqENkrLrelLnsvlssdeyk...ivaev 122
                 +  + + ++ ++ e  +lr +l++  a   +   +l +E ++L+ +L    s ++     + ae+
  MMETSP1137-20121227|678_1  25 AVAGTTTRTESMQAEIGQLRSQLQEVTASKSATATSLSNEMTKLKSQLAEAASAKSTMaanLQAEI 90 
                555666667777888888888888887777777778888888888888877776664321122333 PP

  == domain 2    score: 2.2 bits;  conditional E-value: 0.057
  TIGR00219  71 leleNkklrqellkknaqlelltqelkqENkrLrelLnsvlss 113
                 e e  kl+ el +  +  + lt +++ E ++Lr +L+  ++ 
  MMETSP1137-20121227|678_1 136 AEAEVAKLKSELANAESAQLSLTASMQGEIAQLRSQLEEARRV 178
                4678899*****9995555555666************988775 PP

>> TIGR03185  DNA_S_dndD: DNA sulfur modification protein DndD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6  11.0    0.0016       0.5     338     493 ..       4     158 ..       2     179 .. 0.69

  Alignments for each domain:
  == domain 1    score: 6.6 bits;  conditional E-value: 0.0016
  TIGR03185 338 klalpaelvkelaaelaelakkaktdleiplllsdselaqlevliekvkrekqdaksqLlkeleeleeelaeldkkietvpd..eekvaelleeleeaeeevakseveie....ektekleelkeaieelrkelkektkqkedaeelervikladkvkktle 493
                +la+ +e +k+la+e a l + a + + + +++++ e+ ql  + ++v   k ++   L++e  +l+ +lae + + +t+++  + ++a+l+++l+e + + +++   ++    ++t++l+e++    +++  +      + ++++l+  +  a++++ +l+
  MMETSP1137-20121227|678_1   4 ELAAAKEEAKALATEAAGLRA-AVAGTTTRTESMQAEIGQLRSQLQEVTASKSATATSLSNEMTKLKSQLAEAASAKSTMAAnlQAEIAQLRSQLAEVTSSATATSSGMQgeiaRLTAQLDEARALGSAVKASA------EAEVAKLKSELANAESAQLSLT 158
                678899999*****9999877.489999999999************************************9998776666552268899999999999988877655554000044444444444444444443......3334444444444444444444 PP

>> TIGR01010  BexC_CtrB_KpsE: polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   2.0    0.0012      0.37     222     293 ..       4      76 ..       2      82 .. 0.81
   2 ?    3.1   6.1     0.028       8.8     205     299 ..      72     162 ..      69     177 .. 0.73

  Alignments for each domain:
  == domain 1    score: 7.6 bits;  conditional E-value: 0.0012
  TIGR01010 222 elirvqaelaqlksitkednPqvvslqariksLkkeideqrkklsgkqndslseqtaeyedl.klqnelakqq 293
                el+ ++ e + l +       +v+   +r++s+++ei++ r++l   + +++++ t+  +++ kl+++la++ 
  MMETSP1137-20121227|678_1   4 ELAAAKEEAKALATEAAGLRAAVAGTTTRTESMQAEIGQLRSQLQEVTASKSATATSLSNEMtKLKSQLAEAA 76 
                666677777777777777778899999*******************999999999988776537999999864 PP

  == domain 2    score: 3.1 bits;  conditional E-value: 0.028
  TIGR01010 205 lkaqsevqlslistleselirvqaelaqlksitkednPqvvslqariksLkkeideqrkklsgkqndslseqtaeyedlklqnelakqqlkaalt 299
                l + +++++++ ++l+ e ++ +++la++ s           +q+ i  L++++de r+  s+  + s+   +a+ +    ++e a+  l+a+++
  MMETSP1137-20121227|678_1  72 LAEAASAKSTMAANLQAEIAQLRSQLAEVTSSATA---TSSGMQGEIARLTAQLDEARALGSAV-KASAEAEVAKLKSELANAESAQLSLTASMQ 162
                56789999*********************999888...66899999********9987644444.555555555555545555556655555554 PP

>> TIGR02680  TIGR02680: TIGR02680 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2  15.5    0.0025      0.79     411     592 ..       6     188 ..       1     202 [. 0.68

  Alignments for each domain:
  == domain 1    score: 5.2 bits;  conditional E-value: 0.0025
  TIGR02680 411 alaaqelqelgalaldarrqdadrviaerselvall.rrrvdeadeaeaesaaaraardeldeeaeqaaaraeladeavdeeeavlaaadawqaqleeltalavdea...vsaLadldslaallqg.eapvreavesavqkladelareraalrlaeekleeerdalrtererleeeedeeppppat 592
                a+a++e+++l+    + +r ++ + + + + + a++ + r + ++ +  +sa a    +e+++   q a++a+++ + + + +a +a   ++  ql+e+t  a +++   ++ +a l++  + +++  + v+  +e+ v kl+ ela++++a       ++ e ++lr + e+ ++   + pppp++
  MMETSP1137-20121227|678_1   6 AAAKEEAKALA-TEAAGLRAAVAGTTTRTESMQAEIgQLRSQLQEVTASKSATATSLSNEMTKLKSQLAEAASAKSTMAANLQAEIA---QLRSQLAEVTSSATATSsgmQGEIARLTAQLDEARAlGSAVKASAEAEVAKLKSELANAESAQLSLTASMQGEIAQLRSQLEEARRVSMPPPPPPEW 188
                45556666663.555666666666655555444444155555666666777788888889999999999999998888888888888...5555555555555555501044566665444444431444788888889999999999999999999999999999999999999999999999887 PP

>> TIGR03683  A-tRNA_syn_arch: alanine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   4.3     0.011       3.4     749     875 ..       8     129 ..       2     163 .. 0.68

  Alignments for each domain:
  == domain 1    score: 3.5 bits;  conditional E-value: 0.011
  TIGR03683 749 lkesaeilkvepeqlpetvkrffeewkeqrkeieklkeklaelkieeleseaekvgdvkvvvekvdadeeelkeiaeklaekekvvvlvsekegkvkvvvssgekvkvkagelvkeiakllggkggG 875
                 ke+a++l +e+  l + v  + ++ +  + ei +l+++l e+++++ ++ ++  ++++ + +++ +  ++ +++a++l+ + + +  + ++ ++    +ssg  ++ ++  l  ++    ++++ G
  MMETSP1137-20121227|678_1   8 AKEEAKALATEAAGLRAAVAGTTTRTESMQAEIGQLRSQLQEVTASKSATATSLSNEMTKLKSQLAEAASAKSTMAANLQAEIAQLRSQLAEVTSSATATSSG--MQGEIARLTAQL---DEARALG 129
                578999999999*********************************9988888888888889999988888888899888665444443333333333333333..334444444443...2222222 PP

>> TIGR03348  VI_IcmF: type VI secretion protein IcmF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   8.2   0.00078      0.25     834     936 ..       7     106 ..       1     118 [. 0.72

  Alignments for each domain:
  == domain 1    score: 7.0 bits;  conditional E-value: 0.00078
  TIGR03348 834 aaepekgaveehFealrrllkeegekgaaldallaaleelqqqLqalaaalnsaqaalkarvksasdalsalqqeaarlPeplrawlgklaaqaaklvlqear 936
                aa++e++a++++ + lr+++  +g+++   ++++a++ +l++qLq+++a++++++  l+ ++++ +++l++++++++ +++ l+a +++l +q a+++ +++ 
  MMETSP1137-20121227|678_1   7 AAKEEAKALATEAAGLRAAV--AGTTT-RTESMQAEIGQLRSQLQEVTASKSATATSLSNEMTKLKSQLAEAASAKSTMAANLQAEIAQLRSQLAEVTSSATA 106
                33333337777778888888..55544.499999999999999999999999999998877777777777777777777777777777777777777666554 PP

>> TIGR03480  HpnN: hopanoid biosynthesis associated RND transporter like protein HpnN
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   6.9    0.0056       1.8     563     642 ..      24      98 ..       3     108 .. 0.80
   2 ?    2.9   1.9     0.014       4.4     576     651 ..     111     183 ..      98     198 .. 0.71

  Alignments for each domain:
  == domain 1    score: 4.2 bits;  conditional E-value: 0.0056
  TIGR03480 563 ekpapsaeeeaaalrklaaklekalekeekpdakaakkLaeslarllakakaqaatlealqkallatLpeelerlrdale 642
                ++ a  + ++++++++   +l+++l++ +  +++ a++L++++++l    k+q a +++++++++a L++e+++lr++l+
  MMETSP1137-20121227|678_1  24 AAVA-GTTTRTESMQAEIGQLRSQLQEVTASKSATATSLSNEMTKL----KSQLAEAASAKSTMAANLQAEIAQLRSQLA 98 
                3333.57889999999999******9999999999***********....8999999999999************99986 PP

  == domain 2    score: 2.9 bits;  conditional E-value: 0.014
  TIGR03480 576 lrklaaklekalekeekpdakaakkLaeslarllakakaqaatlealqkallatLpeelerlrdale.aepvtledl 651
                ++   a+l+++l++ +   ++  ++ ++++a+l    k++ a +e++q +l+a+++ e+++lr++le a++v++   
  MMETSP1137-20121227|678_1 111 MQGEIARLTAQLDEARALGSAVKASAEAEVAKL----KSELANAESAQLSLTASMQGEIAQLRSQLEeARRVSMPPP 183
                555566677777555555555555556667777....99999999******************99963778877655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (311 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       399  (0.0972696); expected 82.0 (0.02)
Passed bias filter:                      124  (0.0302292); expected 82.0 (0.02)
Passed Vit filter:                        22  (0.00536324); expected 4.1 (0.001)
Passed Fwd filter:                        15  (0.00365675); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.64u 0.15s 00:00:00.79 Elapsed: 00:00:00.53
# Mc/sec: 774.50
//
Query:       MMETSP1137-20121227|679_1  [L=361]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (361 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        98  (0.0238908); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.15s 00:00:00.40 Elapsed: 00:00:00.40
# Mc/sec: 1191.20
//
Query:       MMETSP1137-20121227|680_1  [L=193]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (193 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        61  (0.0148708); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.15s 00:00:00.34 Elapsed: 00:00:00.25
# Mc/sec: 1018.96
//
Query:       MMETSP1137-20121227|681_1  [L=1548]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0029   14.7  14.7      0.015   12.4   9.0    2.5  2  TIGR03122 one_C_dehyd_C: formylmethanofuran dehydrogenase subunit C


Domain annotation for each model (and alignments):
>> TIGR03122  one_C_dehyd_C: formylmethanofuran dehydrogenase subunit C
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0      0.11   4.3e+02      43      77 ..     765     798 ..     735     802 .. 0.79
   2 !   12.4   9.0   3.7e-06     0.015      80     209 ..    1320    1459 ..    1307    1476 .. 0.78

  Alignments for each domain:
  == domain 1    score: -2.2 bits;  conditional E-value: 0.11
  TIGR03122  43 vklgelFevevddkaeeaklvlegdvsrvkriGek 77 
                +k +++Fe  + +  +  ++ + g +sr+k iG  
  MMETSP1137-20121227|681_1 765 YKGAQIFEAIGLGP-DIMEMCFTGTASRLKGIGFD 798
                55567777777776.88999************975 PP

  == domain 2    score: 12.4 bits;  conditional E-value: 3.7e-06
  TIGR03122   80 aGeivve..gdvgahvGaemkgG.kivvegnadswlgaemkgGeievkGnagdyvGsa......yrgek..rGmsgGkiiveGnagdelGelmrrGeiliegnagilagaemngGtiaveGkvgervgaemkkGtivvggk 209 
                 +G+i+v+  g+ g+  G+++  G  ++v+g+a++  g+ ++gGei v+ +              + g+    G + G+   +G+ag++   + + G i++   +g      m+gG ++  G++g   ga+m+ G   ++++
  MMETSP1137-20121227|681_1 1320 DGTITVNlkGQTGQSFGFTLAKGvTLNVSGDANDGCGKGLSGGEIYVTPQPSTIAAGLvpednvVVGNValYGATSGRAFFRGKAGERFCVR-NSGAITVVEGMGDHGCEYMTGGRVVCLGETGINFGAGMSGGIAYMYDP 1459
                 67777744499******998655389*********************98865544333000011334332269999***********99765.7899999999999999************************98887766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1548 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       114  (0.0277913); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.90u 0.15s 00:00:01.05 Elapsed: 00:00:00.88
# Mc/sec: 2321.81
//
Query:       MMETSP1137-20121227|682_1  [L=157]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (157 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       107  (0.0260848); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.17s 00:00:00.34 Elapsed: 00:00:00.28
# Mc/sec: 740.08
//
Query:       MMETSP1137-20121227|683_1  [L=307]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (307 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        49  (0.0119454); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.16s 00:00:00.40 Elapsed: 00:00:00.48
# Mc/sec: 844.18
//
Query:       MMETSP1137-20121227|684_1  [L=155]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.9e-27   91.8   0.0    6.6e-27   91.4   0.0    1.2  1  TIGR02180 GRX_euk: glutaredoxin
    8.3e-20   68.7   0.0    1.1e-19   68.2   0.0    1.2  1  TIGR02181 GRX_bact: glutaredoxin 3
    3.9e-16   56.7   0.0    5.2e-16   56.3   0.0    1.1  1  TIGR02189 GlrX-like_plant: glutaredoxin-like family
    4.4e-14   50.0   0.0    7.7e-14   49.3   0.0    1.3  1  TIGR02190 GlrX-dom: glutaredoxin-family domain
    4.5e-08   31.3   0.0    7.3e-08   30.7   0.0    1.3  1  TIGR02196 GlrX_YruB: glutaredoxin-like protein, YruB-family
    0.00019   19.3   0.0    0.00027   18.9   0.0    1.2  1  TIGR00365 TIGR00365: monothiol glutaredoxin, Grx4 family
    0.00031   18.7   0.2    0.00076   17.5   0.1    1.5  1  TIGR02183 GRXA: glutaredoxin, GrxA family
    0.00054   17.5   0.0    0.00065   17.3   0.0    1.2  1  TIGR02738 TrbB: type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB
     0.0031   15.4   0.0     0.0046   14.9   0.0    1.2  1  TIGR00411 redox_disulf_1: redox-active disulfide protein 1
     0.0049   14.3   0.0     0.0063   13.9   0.0    1.2  1  TIGR00385 dsbE: periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily
      0.009   14.3   0.0      0.014   13.6   0.0    1.3  1  TIGR02200 GlrX_actino: glutaredoxin-like protein


Domain annotation for each model (and alignments):
>> TIGR02180  GRX_euk: glutaredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.4   0.0   1.8e-29   6.6e-27       2      83 ..      62     141 ..      61     142 .. 0.95

  Alignments for each domain:
  == domain 1    score: 91.4 bits;  conditional E-value: 1.8e-29
  TIGR02180   2 vvfsKsyCpYckkakelLkklkvkkalevveldklengselqdyLkeltgqrtVPrifingkfiGGsddlkklekkgkleel 83 
                v+fsK++Cp+ck+ak+lL +++  ++++v+eld  ++++e qd+L+e++g+r+VP++fi+g +iGG dd++ l++ gkle l
  MMETSP1137-20121227|684_1  62 VMFSKTFCPFCKRAKALLGEYT--QEMKVYELDGRDDMKECQDALEEIAGERSVPQVFIGGASIGGFDDTAGLHNAGKLEGL 141
                89*****************883..45*****************************************************865 PP

>> TIGR02181  GRX_bact: glutaredoxin 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.2   0.0   3.1e-22   1.1e-19       2      80 .]      62     142 ..      61     142 .. 0.87

  Alignments for each domain:
  == domain 1    score: 68.2 bits;  conditional E-value: 3.1e-22
  TIGR02181   2 viYtkksCpycsrAkalLeekgvefeeievdkdk..eareemierskgrrtvPQifigdvhvGGcddLlaleregkLdkLL 80 
                v+++k++Cp+c+rAkalL e   e++ +e+d  +  ++ +  +e   g+r+vPQ+fig  ++GG+dd + l+++gkL+ LL
  MMETSP1137-20121227|684_1  62 VMFSKTFCPFCKRAKALLGEYTQEMKVYELDGRDdmKECQDALEEIAGERSVPQVFIGGASIGGFDDTAGLHNAGKLEGLL 142
                79****************998888888777765433666777777779*******************************98 PP

>> TIGR02189  GlrX-like_plant: glutaredoxin-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.3   0.0   1.4e-18   5.2e-16       5      95 ..      56     146 ..      52     149 .. 0.94

  Alignments for each domain:
  == domain 1    score: 56.3 bits;  conditional E-value: 1.4e-18
  TIGR02189   5 vsekavvifskssCClshvvkrLllelGvnPavveldkeaeakeiekallelgskeavPvvfvGGklvGgleevmalhlsgsLvpllkkag 95 
                +   + v+fsk+ C ++  +k Ll e+  +  v+eld ++++ke + al e++++ +vP vf+GG  +Gg+++   lh  g+L  ll +ag
  MMETSP1137-20121227|684_1  56 MNSAPLVMFSKTFCPFCKRAKALLGEYTQEMKVYELDGRDDMKECQDALEEIAGERSVPQVFIGGASIGGFDDTAGLHNAGKLEGLLMSAG 146
                556789*****************************************************************************99998887 PP

>> TIGR02190  GlrX-dom: glutaredoxin-family domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.3   0.0   2.1e-16   7.7e-14      10      73 ..      61     128 ..      53     132 .. 0.82

  Alignments for each domain:
  == domain 1    score: 49.3 bits;  conditional E-value: 2.1e-16
  TIGR02190  10 vsvftkpGCPfCakakavLkekGldfeeivLg....kdirtrslravtGattvPqvfinGkliGgsde 73 
                +++f+k  CPfC +aka+L e   +++   L+     +    +l  ++G+ +vPqvfi+G  iGg+d+
  MMETSP1137-20121227|684_1  61 LVMFSKTFCPFCKRAKALLGEYTQEMKVYELDgrddMKECQDALEEIAGERSVPQVFIGGASIGGFDD 128
                789****************99888877666752211334467899*********************97 PP

>> TIGR02196  GlrX_YruB: glutaredoxin-like protein, YruB-family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.7   0.0     2e-10   7.3e-08       3      66 ..      62     128 ..      60     132 .. 0.85

  Alignments for each domain:
  == domain 1    score: 30.7 bits;  conditional E-value: 2e-10
  TIGR02196   3 kvYttpwCppCkkakeyLk..skgiafeeidvekdsaaaeellkklg.qrsvPvivigekivvGFdk 66 
                 +++++ Cp Ck+ak+ L   ++ ++  e+d ++d+++ ++ l++   +rsvP++ ig+  + GFd 
  MMETSP1137-20121227|684_1  62 VMFSKTFCPFCKRAKALLGeyTQEMKVYELDGRDDMKECQDALEEIAgERSVPQVFIGGASIGGFDD 128
                689***************722578899999*******99887776544**********98899**96 PP

>> TIGR00365  TIGR00365: monothiol glutaredoxin, Grx4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.0   7.1e-07   0.00027       9      97 ..      56     142 ..      49     144 .. 0.78

  Alignments for each domain:
  == domain 1    score: 18.9 bits;  conditional E-value: 7.1e-07
  TIGR00365   9 vkenkvvlymkGtpelpqCGfsakavqilkalgvefatvnvl..ed.eeireelkeysnWPtiPqlyvkgelvGGcdivlelyesgelkkll 97 
                +++ ++v++ k       C f ++a  +l ++++e++  ++   +d +e ++ l+e +    +Pq+++ g  +GG d  + l+++g+l+ ll
  MMETSP1137-20121227|684_1  56 MNSAPLVMFSK-----TFCPFCKRAKALLGEYTQEMKVYELDgrDDmKECQDALEEIAGERSVPQVFIGGASIGGFDDTAGLHNAGKLEGLL 142
                55556666655.....4699999999999999987776666411332466789**********************************99876 PP

>> TIGR02183  GRXA: glutaredoxin, GrxA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.1     2e-06   0.00076       3      73 ..      62     128 ..      61     135 .. 0.87

  Alignments for each domain:
  == domain 1    score: 17.5 bits;  conditional E-value: 2e-06
  TIGR02183   3 vifGrpgcpycvrakqlaeklakeladfefryvdihaeGiskadlektvGkpvetvpqifvdekavGGctd 73 
                v+f +  cp+c rak l  + ++e++ +e    d + e   ++ le   G    +vpq+f+   ++GG  d
  MMETSP1137-20121227|684_1  62 VMFSKTFCPFCKRAKALLGEYTQEMKVYELDGRDDMKEC--QDALEEIAGE--RSVPQVFIGGASIGGFDD 128
                789999*********************999888887774..6778988887..58*************877 PP

>> TIGR02738  TrbB: type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.0   1.7e-06   0.00065      46      91 ..      53      94 ..      14     111 .. 0.83

  Alignments for each domain:
  == domain 1    score: 17.3 bits;  conditional E-value: 1.7e-06
  TIGR02738 46 kvlledyklvlfyqstCpyChqfapvLkqlsqqtglevlayslDgk 91
               +++++   lv+f +  Cp+C+++ + L +++q++++    y lDg+
  MMETSP1137-20121227|684_1 53 EATMNSAPLVMFSKTFCPFCKRAKALLGEYTQEMKV----YELDGR 94
               566777889**********************98874....566665 PP

>> TIGR00411  redox_disulf_1: redox-active disulfide protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   1.2e-05    0.0046       5      61 ..      63     120 ..      60     135 .. 0.85

  Alignments for each domain:
  == domain 1    score: 14.9 bits;  conditional E-value: 1.2e-05
  TIGR00411   5 lftsPtCPyCPkakkvveevakeegdkvevekinvmedlkkale..yGimavPaiving 61 
                +f    CP+C +ak    e  +e+ +  e +  + m++ ++ale   G ++vP + i g
  MMETSP1137-20121227|684_1  63 MFSKTFCPFCKRAKALLGEYTQEMKVY-ELDGRDDMKECQDALEeiAGERSVPQVFIGG 120
                788899******************875.6677788999999*99555999999999976 PP

>> TIGR00385  dsbE: periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.0   1.7e-05    0.0063      64     113 ..      58     106 ..      31     113 .. 0.85

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 1.7e-05
  TIGR00385  64 klvLlnvwasWCptCraehplLkelakeglrivgvdykDesqkalkfLke 113
                   L+ +  ++Cp C+    lL e ++e ++++ +d +D+ ++    L+e
  MMETSP1137-20121227|684_1  58 SAPLVMFSKTFCPFCKRAKALLGEYTQE-MKVYELDGRDDMKECQDALEE 106
                456888999*******************.***********9988777776 PP

>> TIGR02200  GlrX_actino: glutaredoxin-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   0.0   3.9e-05     0.014       3      57 ..      62     118 ..      60     124 .. 0.73

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 3.9e-05
  TIGR02200   3 tvYatswCgyCaslkrtLdkdgaeYevvdie...kdeeaadyvksvndGnktvPtVkf 57 
                 ++ ++ C++C+++k  L +   e +v +++   + +e  d  + +  G++ vP V +
  MMETSP1137-20121227|684_1  62 VMFSKTFCPFCKRAKALLGEYTQEMKVYELDgrdDMKECQDALEEIA-GERSVPQVFI 118
                58999*************76666655555541105567778888888.******9965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (155 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       129  (0.0314481); expected 82.0 (0.02)
Passed bias filter:                      129  (0.0314481); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                        11  (0.00268162); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.20u 0.16s 00:00:00.36 Elapsed: 00:00:00.41
# Mc/sec: 498.98
//
Query:       MMETSP1137-20121227|685_1  [L=236]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0075   14.8   0.4      0.013   14.1   0.3    1.4  1  TIGR01167 LPXTG_anchor: LPXTG-motif cell wall anchor domain


Domain annotation for each model (and alignments):
>> TIGR01167  LPXTG_anchor: LPXTG-motif cell wall anchor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.3   3.1e-06     0.013      12      33 ..       4      25 ..       1      26 [. 0.89

  Alignments for each domain:
  == domain 1    score: 14.1 bits;  conditional E-value: 3.1e-06
  TIGR01167 12 lllllGllllglaglllrkrkk 33
               + l++Gl+l+++a++ lr+rk+
  MMETSP1137-20121227|685_1  4 AVLAAGLALIAAASWKLRRRKQ 25
               67899****************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (236 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        82  (0.0199902); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.22u 0.17s 00:00:00.39 Elapsed: 00:00:00.35
# Mc/sec: 889.98
//
Query:       MMETSP1137-20121227|687_1  [L=76]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (76 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       210  (0.0511945); expected 82.0 (0.02)
Passed bias filter:                      137  (0.0333983); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.19s 00:00:00.33 Elapsed: 00:00:00.28
# Mc/sec: 358.26
//
Query:       MMETSP1137-20121227|688_1  [L=285]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00058   17.0   0.0    0.00085   16.5   0.0    1.1  1  TIGR01934 MenG_MenH_UbiE: ubiquinone/menaquinone biosynthesis methyltransferase
     0.0055   14.1   0.0     0.0082   13.5   0.0    1.2  1  TIGR02752 MenG_heptapren: 2-heptaprenyl-1,4-naphthoquinone methyltransferase
  ------ inclusion threshold ------
      0.041   11.0   0.0      0.062   10.4   0.0    1.2  1  TIGR01983 UbiG: 3-demethylubiquinone-9 3-O-methyltransferase


Domain annotation for each model (and alignments):
>> TIGR01934  MenG_MenH_UbiE: ubiquinone/menaquinone biosynthesis methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0   6.2e-07   0.00085      93     139 ..     135     181 ..     128     190 .. 0.94

  Alignments for each domain:
  == domain 1    score: 16.5 bits;  conditional E-value: 6.2e-07
  TIGR01934  93 ieadaeeLpfednsfdavtiafGlRNvtdiekaLkelaRVlkpggrl 139
                + ad++++p++++s++ + i + l  v d++ka+ el+RVl p+g +
  MMETSP1137-20121227|688_1 135 VRADVQDIPLQSESLNGIIILHVLEHVPDYRKAIAELYRVLVPNGFV 181
                789****************************************9976 PP

>> TIGR02752  MenG_heptapren: 2-heptaprenyl-1,4-naphthoquinone methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   0.0     6e-06    0.0082     104     147 ..     138     181 ..     131     190 .. 0.90

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 6e-06
  TIGR02752 104 namelpyednsfdyvtigfglrnvpdylqvlkemarvvkpggkv 147
                +  ++p + +s++ + i   l  vpdy + + e++rv+ p g v
  MMETSP1137-20121227|688_1 138 DVQDIPLQSESLNGIIILHVLEHVPDYRKAIAELYRVLVPNGFV 181
                56789***********************************9976 PP

>> TIGR01983  UbiG: 3-demethylubiquinone-9 3-O-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   4.5e-05     0.062     105     149 ..     138     181 ..     129     183 .. 0.83

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 4.5e-05
  TIGR01983 105 sveelaeeekesfDvvlamEvlEHvadleeilkecaellkpggil 149
                +v+++  + +es + ++++ vlEHv+d ++ + e+ ++l p+g +
  MMETSP1137-20121227|688_1 138 DVQDIPLQ-SESLNGIIILHVLEHVPDYRKAIAELYRVLVPNGFV 181
                55666555.556888999************************975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (285 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        54  (0.0131643); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.23u 0.14s 00:00:00.37 Elapsed: 00:00:00.41
# Mc/sec: 917.49
//
Query:       MMETSP1137-20121227|689_1  [L=336]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (336 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        61  (0.0148708); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.16s 00:00:00.40 Elapsed: 00:00:00.40
# Mc/sec: 1108.71
//
Query:       MMETSP1137-20121227|690_1  [L=355]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-10   37.7   1.8     0.0003   16.8   0.0    4.0  4  TIGR00870 trp: transient-receptor-potential calcium channel protein


Domain annotation for each model (and alignments):
>> TIGR00870  trp: transient-receptor-potential calcium channel protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.6   0.0   5.6e-06     0.023     130     161 ..       5      36 ..       2     103 .. 0.79
   2 !   16.8   0.0   7.2e-08    0.0003     132     161 ..     106     135 ..      56     143 .. 0.91
   3 !    3.1   0.0   0.00099         4     130     159 ..     203     232 ..     150     249 .. 0.82
   4 !    4.3   0.0   0.00043       1.7     183     218 ..     308     343 ..     273     351 .. 0.80

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 5.6e-06
  TIGR00870 130 kgitalilAihkqnyeivklLlekgasveara 161
                +g tal++A+   +  + +lLl++ga+++ + 
  MMETSP1137-20121227|690_1   5 EGRTALHVAASDGDKHMCELLLDSGAQINCKD 36 
                799*************************9653 PP

  == domain 2    score: 16.8 bits;  conditional E-value: 7.2e-08
  TIGR00870 132 italilAihkqnyeivklLlekgasveara 161
                 tal+ A+ + n+ iv++Lle ga+v++r 
  MMETSP1137-20121227|690_1 106 RTALHCAAREGNLPIVQMLLEHGAEVNLRS 135
                5**************************886 PP

  == domain 3    score: 3.1 bits;  conditional E-value: 0.00099
  TIGR00870 130 kgitalilAihkqnyeivklLlekgasvea 159
                   t+l lA  + n  + ++L++ ga+v+ 
  MMETSP1137-20121227|690_1 203 DKRTPLXLAXCEGNKVLAQALVDAGANVNF 232
                457999999999999999999999999984 PP

  == domain 4    score: 4.3 bits;  conditional E-value: 0.00043
  TIGR00870 183 nlaaclasesivsllsedpAdiltadslgntllhll 218
                   acl++   v+ l+ ++Ad++++d+ g t l+ +
  MMETSP1137-20121227|690_1 308 HQSACLGERVXVEILLAHGADVNARDRSGATPLRXA 343
                456899999999999999999999998887766655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (355 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        70  (0.0170648); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.32u 0.17s 00:00:00.49 Elapsed: 00:00:00.48
# Mc/sec: 976.17
//
Query:       MMETSP1137-20121227|692_1  [L=457]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (457 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       137  (0.0333983); expected 82.0 (0.02)
Passed bias filter:                       44  (0.0107265); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.12s 00:00:00.43 Elapsed: 00:00:00.44
# Mc/sec: 1370.89
//
Query:       MMETSP1137-20121227|693_1  [L=60]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        61  (0.0148708); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:00.62
# Mc/sec: 127.73
//
Query:       MMETSP1137-20121227|694_1  [L=555]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (555 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       171  (0.041687); expected 82.0 (0.02)
Passed bias filter:                       99  (0.0241346); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.19s 00:00:00.59 Elapsed: 00:00:00.55
# Mc/sec: 1331.89
//
Query:       MMETSP1137-20121227|695_1  [L=187]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (187 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       124  (0.0302292); expected 82.0 (0.02)
Passed bias filter:                      108  (0.0263286); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.16s 00:00:00.34 Elapsed: 00:00:00.28
# Mc/sec: 881.50
//
Query:       MMETSP1137-20121227|696_1  [L=861]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.8e-73  244.7   7.2    2.1e-35  120.2   0.0    3.5  3  TIGR03719 ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family
    1.4e-43  146.8   0.4    1.7e-20   71.2   0.1    3.8  3  TIGR03873 F420-0_ABC_ATP: proposed F420-0 ABC transporter, ATP-binding protein
    5.2e-39  132.4   6.6      4e-23   80.0   0.0    3.8  3  TIGR02857 CydD: thiol reductant ABC exporter, CydD subunit
    1.4e-38  130.4   0.2    3.3e-21   73.1   0.1    3.8  3  TIGR03375 type_I_sec_LssB: type I secretion system ATPase
    2.6e-35  119.9   0.0    6.8e-11   40.1   0.0    4.2  4  TIGR02673 FtsE: cell division ATP-binding protein FtsE
    3.1e-35  119.5   3.4    1.4e-22   78.2   0.1    3.3  3  TIGR01189 ccmA: heme ABC exporter, ATP-binding protein CcmA
    8.9e-35  117.7   0.3    2.4e-09   34.8   0.0    4.4  4  TIGR01166 cbiO: cobalt ABC transporter, ATP-binding protein
    2.3e-34  116.8  17.2    4.7e-21   72.8   0.1    5.4  3  TIGR02868 CydC: thiol reductant ABC exporter, CydC subunit
    2.3e-34  116.7   0.7    1.7e-15   54.9   0.5    4.2  3  TIGR03864 PQQ_ABC_ATP: ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system
    3.1e-34  116.1   0.0    6.2e-12   43.2   0.0    4.2  4  TIGR03608 L_ocin_972_ABC: putative bacteriocin export ABC transporter, lactococcin 972 group
    3.2e-34  116.4   2.5    6.1e-15   53.1   0.4    4.0  3  TIGR01188 drrA: daunorubicin resistance ABC transporter, ATP-binding protein
    3.8e-33  112.7   0.0    4.6e-15   53.5   0.0    4.3  3  TIGR02315 ABC_phnC: phosphonate ABC transporter, ATP-binding protein
    6.7e-33  111.8   0.0    3.9e-10   36.7   0.0    4.1  4  TIGR01842 type_I_sec_PrtD: type I secretion system ATPase
    9.9e-33  111.5   0.0    2.7e-17   61.1   0.0    4.1  3  TIGR00960 3a0501s02: type II secretory pathway family protein
    1.5e-32  110.7   0.0    1.4e-09   34.9   0.0    4.1  4  TIGR03797 NHLM_micro_ABC2: NHLM bacteriocin system ABC transporter, ATP-binding protein
    1.2e-31  107.8   0.0    9.6e-12   42.7   0.0    4.3  4  TIGR02211 LolD_lipo_ex: lipoprotein releasing system, ATP-binding protein
    2.5e-31  106.7   0.0      5e-13   46.8   0.0    4.3  4  TIGR00972 3a0107s01c2: phosphate ABC transporter, ATP-binding protein
    4.8e-31  106.0   0.2    1.8e-12   45.1   0.1    4.2  3  TIGR02769 nickel_nikE: nickel import ATP-binding protein NikE
    5.5e-31  105.3   0.1    1.6e-15   54.2   0.1    3.8  3  TIGR03796 NHLM_micro_ABC1: NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein
    9.1e-29   98.5   0.0    9.6e-14   49.4   0.0    3.8  3  TIGR03740 galliderm_ABC: lantibiotic protection ABC transporter, ATP-binding subunit
      2e-28   96.9   0.0    3.9e-08   29.8   0.0    4.1  4  TIGR00958 3a01208: antigen peptide transporter 2
    1.4e-27   94.6   0.1      6e-11   40.2   0.0    4.3  3  TIGR02982 heterocyst_DevA: ABC exporter ATP-binding subunit, DevA family
    2.3e-27   93.7   0.1    6.3e-12   43.3   0.0    5.2  5  TIGR03410 urea_trans_UrtE: urea ABC transporter, ATP-binding protein UrtE
    3.1e-27   93.3   0.0    1.3e-08   31.8   0.0    4.2  4  TIGR02204 MsbA_rel: ABC transporter, permease/ATP-binding protein
    4.6e-27   93.0   2.2    2.1e-12   45.1   0.4    4.0  3  TIGR03771 anch_rpt_ABC: anchored repeat-type ABC transporter, ATP-binding subunit
    7.1e-27   92.4   0.2      3e-07   28.2   0.0    4.2  4  TIGR03411 urea_trans_UrtD: urea ABC transporter, ATP-binding protein UrtD
    1.6e-26   91.2   0.3    2.1e-11   41.6   0.0    4.1  4  TIGR00968 3a0106s01: sulfate ABC transporter, ATP-binding protein
    2.9e-26   90.3   0.1    1.6e-10   38.6   0.0    4.1  4  TIGR03265 PhnT2: putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein
    4.2e-26   89.6   0.4    1.4e-10   38.8   0.0    4.3  3  TIGR02324 CP_lyasePhnL: phosphonate C-P lyase system protein PhnL
    7.3e-26   88.7   2.6    7.5e-10   36.1   0.2    3.6  3  TIGR01288 nodI: nodulation ABC transporter NodI
    1.2e-24   85.0   0.0    2.8e-07   28.1   0.0    4.3  4  TIGR01978 sufC: FeS assembly ATPase SufC
    1.5e-24   84.6   0.2    5.8e-07   27.2   0.0    4.2  4  TIGR01277 thiQ: thiamine ABC transporter, ATP-binding protein
      2e-24   84.4   0.0    9.2e-11   39.6   0.0    4.1  3  TIGR03522 GldA_ABC_ATP: gliding motility-associated ABC transporter ATP-binding subunit GldA
    2.6e-24   83.3   0.0    6.7e-08   29.1   0.0    4.1  4  TIGR01846 type_I_sec_HlyB: type I secretion system ATPase
    1.2e-23   81.2   0.0    1.7e-09   34.5   0.0    4.1  4  TIGR03269 met_CoM_red_A2: methyl coenzyme M reductase system, component A2
    1.5e-23   81.5   0.2    7.4e-09   33.1   0.0    4.2  4  TIGR02142 modC_ABC: molybdate ABC transporter, ATP-binding protein
    6.9e-23   79.0   0.0    4.8e-10   36.9   0.0    4.2  4  TIGR03005 ectoine_ehuA: ectoine/hydroxyectoine ABC transporter, ATP-binding protein EhuA
    1.7e-22   77.6   0.0    7.6e-08   29.1   0.0    3.9  4  TIGR01193 bacteriocin_ABC: ABC-type bacteriocin transporter
    1.7e-22   77.8   0.0    1.3e-10   38.9   0.1    4.1  3  TIGR02770 nickel_nikD: nickel import ATP-binding protein NikD
    3.6e-21   73.4   0.1    7.3e-08   29.6   0.1    4.0  3  TIGR02314 ABC_MetN: D-methionine ABC transporter, ATP-binding protein
    1.7e-20   70.9   0.0    5.7e-06   22.9   0.0    4.1  4  TIGR02203 MsbA_lipidA: lipid A export permease/ATP-binding protein MsbA
    3.4e-20   70.3   0.1    3.8e-08   30.6   0.0    4.3  4  TIGR01186 proV: glycine betaine/L-proline transport ATP binding subunit
    2.4e-19   67.4   0.0      2e-08   31.5   0.0    4.2  4  TIGR03258 PhnT: 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT
    3.9e-19   67.0   0.1    3.6e-07   27.8   0.1    3.9  3  TIGR01184 ntrCD: nitrate ABC transporter, ATP-binding proteins C and D
    6.6e-19   66.0   0.1    1.1e-09   35.7   0.0    4.1  4  TIGR01187 potA: polyamine ABC transporter, ATP-binding protein
    2.7e-18   62.7   0.7    5.7e-10   35.1   0.1    3.8  3  TIGR01271 CFTR_protein: cystic fibrosis transmembrane conductor regulator (CFTR)
    6.7e-18   62.2   0.0    2.2e-05   21.0   0.0    4.2  4  TIGR02633 xylG: D-xylose ABC transporter, ATP-binding protein
      1e-17   61.7   0.1    5.2e-08   29.6   0.1    3.8  2  TIGR00954 3a01203: peroxysomal long chain fatty acyl transporter
    6.9e-16   55.8   0.0    3.6e-05   20.4   0.0    4.1  4  TIGR00955 3a01204: pigment precursor permease
    2.3e-15   54.6   0.1    6.5e-06   23.6   0.0    4.1  4  TIGR02323 CP_lyasePhnK: phosphonate C-P lyase system protein PhnK
    2.2e-14   50.8   9.3    3.5e-14   50.2   6.4    1.3  1  TIGR00990 3a0801s09: mitochondrial precursor proteins import receptor
    2.8e-14   50.4   0.0    0.00024   17.7   0.0    3.6  4  TIGR01192 chvA: glucan exporter ATP-binding protein
    3.2e-12   42.6   0.1    0.00091   14.5   0.0    3.9  4  TIGR00957 MRP_assoc_pro: multi drug resistance-associated protein (MRP)
    2.1e-11   41.2   2.9    1.4e-06   25.4   0.0    4.2  4  TIGR03415 ABC_choXWV_ATP: choline ABC transporter, ATP-binding protein
    1.7e-09   34.3   0.2    0.00025   17.2   0.1    3.2  3  TIGR00630 uvra: excinuclease ABC subunit A
    2.3e-06   22.6   0.0     0.0081   10.8   0.0    2.3  2  TIGR01257 rim_protein: rim ABC transporter
    2.2e-05   22.0   0.2    7.5e-05   20.3   0.1    1.9  1  TIGR02552 LcrH_SycD: type III secretion low calcium response chaperone LcrH/SycD
    2.6e-05   21.7   0.1    2.6e-05   21.7   0.0    3.0  2  TIGR02521 type_IV_pilW: type IV pilus biogenesis/stability protein PilW
    3.1e-05   20.6   0.1      0.015   11.7   0.0    3.4  4  TIGR01194 cyc_pep_trnsptr: cyclic peptide transporter
     0.0001   17.8   0.0       0.13    7.5   0.0    3.3  3  TIGR00956 3a01205: pleiotropic drug resistance family protein
     0.0025   14.4   0.2      0.053   10.0   0.1    2.1  2  TIGR02546 III_secr_ATP: type III secretion apparatus H+-transporting two-sector ATPase
     0.0048   12.5   0.0     0.0048   12.5   0.0    3.5  4  TIGR02168 SMC_prok_B: chromosome segregation protein SMC
     0.0053   13.7   0.2        1.3    5.9   0.0    3.3  3  TIGR00611 recf: DNA replication and repair protein RecF
  ------ inclusion threshold ------
      0.019   12.8   8.7        5.9    4.6   5.2    3.7  3  TIGR03499 FlhF: flagellar biosynthesis protein FlhF
      0.021   11.8   0.0       0.53    7.2   0.0    2.3  2  TIGR00507 aroE: shikimate 5-dehydrogenase
      0.024   12.3   0.3        1.8    6.2   0.0    2.4  2  TIGR00152 TIGR00152: dephospho-CoA kinase
      0.048    9.7   0.2       0.15    8.0   0.0    1.9  2  TIGR00929 VirB4_CagE: type IV secretion/conjugal transfer ATPase, VirB4 family
        9.7    3.0  25.8        1.3    5.9  11.3    2.3  2  TIGR01554 major_cap_HK97: phage major capsid protein, HK97 family


Domain annotation for each model (and alignments):
>> TIGR03719  ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.6   0.0   1.5e-08   9.2e-07      16     112 ..      17     112 ..      11     126 .. 0.86
   2 !  101.4   0.2   1.7e-31     1e-29     120     271 ..     165     318 ..     140     359 .. 0.86
   3 !  120.2   0.0   3.4e-37   2.1e-35     303     536 ..     377     615 ..     369     632 .. 0.86

  Alignments for each domain:
  == domain 1    score: 25.6 bits;  conditional E-value: 1.5e-08
  TIGR03719  16 pkkeilkdislsffpgakiGvlGlnGaGkstllkimaGvdkefeGealaaegikvGyleqePkldeektvrenveegvaeikealdrfeeisaklae 112
                + k++++d +ls ++g + G++G+nG+Gkst+++ +   + e   +a + +g+ + ++eqe +  +e t  ++v ++ +  +++l++ +e++++l e
  MMETSP1137-20121227|696_1  17 GGKTLFHDAKLSLIHGRRYGLIGPNGCGKSTVMHAIGTGEVEEIRNA-IPPGMDILLVEQEVQASDEITALQMVVSADTRRTALLAEAKELEKTLEE 112
                67999****************************98866666655555.569***********************99999999999999999887766 PP

  == domain 2    score: 101.4 bits;  conditional E-value: 1.7e-31
  TIGR03719 120 lleeqaklqekidaadawdldskleiamdalrlpe..edakveklsGGekrrvalcrlllekPdlllldePtnhldaesvaWlekflkeykGtvvavthdryfldnvaeWileldrGegipykgnysswleqkekrleqeekeeaarkkalkke 271
                ++ + +++ ++++  +a + +++ +  +  l+  e  +++  + +sGG + r++l+r l+ kP lllldePtnhld  +v Wle +l+++k t+v+v hdr fl  v+  il   r + + y gny  + +  +++le+ +ke ++++k+lk+ 
  MMETSP1137-20121227|696_1 165 IAGRLSDVYDELADIGADSAEQRASAILSGLQFLEeqKNWPTAAFSGGWRMRISLARALFVKPRLLLLDEPTNHLDLHAVIWLEGYLQKWKHTLVVVSHDRDFLTTVCTDILHCWRSKLVHYAGNYEVFEKVFASKLEEYNKEYERQQKKLKEL 318
                55566677788888888889999999999998865115677899**************************************************************************************************999999999864 PP

  == domain 3    score: 120.2 bits;  conditional E-value: 3.4e-37
  TIGR03719 303 kkeetaeivippgerlGdkvievenlskafgdk.lliddlsfklpkggivGviGpnGaGkstlfklitgkekpdsGelkiGetvklayvdq.srdalddnk.....tvweeisdGldllklgkvevnsrayvgrfnfkGadqqkkvgelsGGernrvhlakllkeggnvllldePtndldvetlraleeallefaGcavvishdrwfldriathilafegdskveffeGnyeeyeedkkkr 536
                 k+++ +i+ p++  +   ++ v+n+s +++++  l+ d++f l  ++ v ++G+nG+Gkstl+kl+ ++ +p +Ge++   + k++  +q s d+l +       +v   +s  + ++  +  + + r+ +g+f+++G+   + +++lsGG++ rv + +l  +   +llldePtn ld+et+ +l +al++f G ++vi+h+  ++++++  i   e+  kv+ f G++eey++   ++
  MMETSP1137-20121227|696_1 377 IKSNNMHIHFPVAGEIAMPILAVDNVSFHYENQeDLFTDVDFGLNMDSRVALVGANGTGKSTLLKLMLSELTPTRGEVRQSRSCKIGVYNQhSCDQLAAGMrlakgEVLSPVSYLAHTFP-SMSTQEIRNALGKFGLEGHHHLQAIETLSGGQKSRVVFVELGLRRCHLLLLDEPTNHLDLETVDCLVKALHAFEGGVLVITHNVSLINKVCNQIWVIED-RKVNRFAGEFEEYRDMLAEQ 615
                57788999**********************87627***************************************************9888835688887551111134444544443332.2233355999*******************************999***************************************************9985.69***********9876655 PP

>> TIGR03873  F420-0_ABC_ATP: proposed F420-0 ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1   0.0   5.6e-07   3.4e-05       5      49 ..      10      54 ..       6     108 .. 0.81
   2 !   50.2   0.0   7.1e-16   4.3e-14     135     210 ..     206     278 ..     176     296 .. 0.85
   3 !   71.2   0.1   2.9e-22   1.7e-20       3     215 ..     398     598 ..     396     616 .. 0.82

  Alignments for each domain:
  == domain 1    score: 21.1 bits;  conditional E-value: 5.6e-07
  TIGR03873  5 srvsvraggrlivddvdvtaPaGaltgllGPnGsGkstllrllaG 49
                + s+++gg+++  d +++  +G   gl+GPnG+Gkst+++ +  
  MMETSP1137-20121227|696_1 10 PKFSISRGGKTLFHDAKLSLIHGRRYGLIGPNGCGKSTVMHAIGT 54
               67899**********************************987743 PP

  == domain 2    score: 50.2 bits;  conditional E-value: 7.1e-16
  TIGR03873 135 lstlsGGerqrvhlaralaqePklllldePtnhldvsaqlellalvrelaaegvtvvvalhdlnlaasvcdhvvvl 210
                + ++sGG r r+ laral  +P+lllldePtnhld++a + l + +++    + t vv  hd ++ ++vc +++  
  MMETSP1137-20121227|696_1 206 TAAFSGGWRMRISLARALFVKPRLLLLDEPTNHLDLHAVIWLEGYLQKW---KHTLVVVSHDRDFLTTVCTDILHC 278
                4568*************************************99999999...99999999**********998755 PP

  == domain 3    score: 71.2 bits;  conditional E-value: 2.9e-22
  TIGR03873   3 rlsrvsvragg.rlivddvdvtaPaGaltgllGPnGsGkstllrllaGllapdaGevdlagadlkalsrrararrvalveqdsdaevplsvrdv..valGriPhrslfaadsdedaevvdralarvels.sladrdlstlsGGerqrvhlaralaqePklllldePtnhldvsaqlellalvrelaaegvtvvvalhdlnlaasvcdhvvvldgGrv 215
                 +++vs++ ++   + +dvd      +  +l+G nG+Gkstll+l+   l+p++Gev           r++r++++ + +q+s +++   +r +   +l  + +++   + ++  ++ +++al++ +l+ +   ++++tlsGG++ rv +     ++ +lllldePtnhld+++   l+++++     +  v+v  h+++l  +vc+++ v++  +v
  MMETSP1137-20121227|696_1 398 AVDNVSFHYENqEDLFTDVDFGLNMDSRVALVGANGTGKSTLLKLMLSELTPTRGEV-----------RQSRSCKIGVYNQHSCDQLAAGMRLAkgEVLSPVSYLAH--TFPSMSTQEIRNALGKFGLEgHHHLQAIETLSGGQKSRVVFVELGLRRCHLLLLDEPTNHLDLETVDCLVKALHAF---EGGVLVITHNVSLINKVCNQIWVIEDRKV 598
                5677787765415699***************************************99...........678************998776666441155666666554..3334456667899***99984556689************99999999***************98766555555555...88899999*************99988766 PP

>> TIGR02857  CydD: thiol reductant ABC exporter, CydD subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.1   0.0   0.00024     0.015     330     368 ..      15      52 ..       4     113 .. 0.87
   2 !   42.0   0.0   2.1e-13   1.3e-11     457     521 ..     207     269 ..     177     276 .. 0.89
   3 !   80.0   0.0   6.7e-25     4e-23     321     527 ..     396     591 ..     371     593 .. 0.81

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 0.00024
  TIGR02857 330 ayegrkpalkevsltvepgelvalvGaSGaGKstllkll 368
                +  g++   ++ +l++  g++++l+G+ G+GKst+++++
  MMETSP1137-20121227|696_1  15 SRGGKT-LFHDAKLSLIHGRRYGLIGPNGCGKSTVMHAI 52 
                445555.8889999**********************987 PP

  == domain 2    score: 42.0 bits;  conditional E-value: 2.1e-13
  TIGR02857 457 agLSgGqrqRlaLArallrdapllllDEPtahLDaeteaevlealrelaegrtvllvaHrlalae 521
                a  SgG r R++LAral  + +llllDEPt hLD ++   ++  l++   ++t+++v+H++  ++
  MMETSP1137-20121227|696_1 207 AAFSGGWRMRISLARALFVKPRLLLLDEPTNHLDLHAVIWLEGYLQK--WKHTLVVVSHDRDFLT 269
                679**********************************9999999999..689********98765 PP

  == domain 3    score: 80.0 bits;  conditional E-value: 6.7e-25
  TIGR02857 321 slelenvsvayegrkpalkevsltvepgelvalvGaSGaGKstllklllgfvepteGailvnga.elaeldadswrkqiawvpQkPllfegtvaenir...larkdaseaevkealeragldelvkalpqgleteiGergagLSgGqrqRlaLArallrdapllllDEPtahLDaeteaevlealrelaegrtvllvaHrlalaela.dkiv 527
                 l ++nvs+ ye++++  ++v++ ++  ++valvGa G GKstllkl+l  ++pt+G+++   + ++   +++    ++  ++    l +g v+  +    +  +  s++e+++al + gl+   ++l+         + + LSgGq+ R+    + lr ++llllDEPt hLD et   +++al+++  g  vl+++H+ +l++++ ++i+
  MMETSP1137-20121227|696_1 396 ILAVDNVSFHYENQEDLFTDVDFGLNMDSRVALVGANGTGKSTLLKLMLSELTPTRGEVRQSRScKIGVYNQH----SCDQLAAGMRLAKGEVLSPVSylaHTFPSMSTQEIRNALGKFGLEG-HHHLQ---------AIETLSGGQKSRVVFVELGLRRCHLLLLDEPTNHLDLETVDCLVKALHAFEGG--VLVITHNVSLINKVcNQIW 591
                6899********************************************************5444244444433....4555556677888888877754226678999*************66.44443.........4478********************************************98766..899****998876415555 PP

>> TIGR03375  type_I_sec_LssB: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.2   0.0   0.00058     0.035     482     512 ..      21      51 ..       9      59 .. 0.85
   2 !   41.7   0.0   1.7e-13     1e-11     603     668 ..     208     271 ..     198     297 .. 0.89
   3 !   73.1   0.1   5.4e-23   3.3e-21     467     679 ..     398     598 ..     378     603 .. 0.84

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 0.00058
  TIGR03375 482 aLknvslkikpGekvaiiGriGsGKstllkl 512
                  ++ +l++  G + ++iG +G+GKst+++ 
  MMETSP1137-20121227|696_1  21 LFHDAKLSLIHGRRYGLIGPNGCGKSTVMHA 51 
                5678899999*****************9876 PP

  == domain 2    score: 41.7 bits;  conditional E-value: 1.7e-13
  TIGR03375 603 sLSgGQrqavalaRallkdppillLDEPtsalDnsseekllerLkelladkTlvlvtHrtslLelv 668
                ++SgG r  ++laRal  +p++llLDEPt++lD ++   l   L+++  ++Tlv+v+H   +L+ v
  MMETSP1137-20121227|696_1 208 AFSGGWRMRISLARALFVKPRLLLLDEPTNHLDLHAVIWLEGYLQKW--KHTLVVVSHDRDFLTTV 271
                78*******************************************99..57*******99999765 PP

  == domain 3    score: 73.1 bits;  conditional E-value: 5.4e-23
  TIGR03375 467 elknvsfkYpeeekaaLknvslkikpGekvaiiGriGsGKstllklllglyepteGsvlldgvdirqidpadlrrnigyvpqdvtLfyGtlrdNial...gapaaedeellraaelaGvtefvkkhpkGldlqigerGesLSgGQrqavalaRallkdppillLDEPtsalDnsseekllerLkelladkTlvlvtHrtslLe.lvdriivldkGri 679
                +++nvsf+Y+++e     +v + ++  ++va++G +G+GKstllkl+l  ++pt+G+v        +i + + +++   ++  ++L  G++   + +     p+++ +e+ +a+ ++G++     h +          e LSgGQ+  v++  + l+  ++llLDEPt++lD ++ + l+++L+++     ++++tH  sl++ ++++i v+++ ++
  MMETSP1137-20121227|696_1 398 AVDNVSFHYENQE-DLFTDVDFGLNMDSRVALVGANGTGKSTLLKLMLSELTPTRGEVRQS--RSCKIGVYN-QHSCDQLAAGMRLAKGEVLSPVSYlahTFPSMSTQEIRNALGKFGLEGHH--HLQA--------IETLSGGQKSRVVFVELGLRRCHLLLLDEPTNHLDLETVDCLVKALHAFEG--GVLVITHNVSLINkVCNQIWVIEDRKV 598
                689******7765.67899**************************************9854..334444433.56778899999999999987665510055699*************98643..3333........368*******************************************99866..589********9636799999999886 PP

>> TIGR02673  FtsE: cell division ATP-binding protein FtsE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   0.0     0.018       1.1      16      48 ..      20      52 ..      12      65 .. 0.87
   2 !   40.1   0.0   1.1e-12   6.8e-11     111     208 ..     181     276 ..     175     281 .. 0.81
   3 !   34.5   0.0   5.6e-11   3.4e-09       2      60 ..     397     455 ..     396     475 .. 0.92
   4 !   32.9   0.0   1.8e-10   1.1e-08     114     211 ..     499     594 ..     490     597 .. 0.84

  Alignments for each domain:
  == domain 1    score: 6.7 bits;  conditional E-value: 0.018
  TIGR02673 16 eaLkdvslkiekgeflfltGasGaGkttllkll 48
               +  +d +l++ +g  + l+G+ G Gk+t+++ +
  MMETSP1137-20121227|696_1 20 TLFHDAKLSLIHGRRYGLIGPNGCGKSTVMHAI 52
               5679999**********************9877 PP

  == domain 2    score: 40.1 bits;  conditional E-value: 1.1e-12
  TIGR02673 111 eeeiqkrveevlelvgledkakalp.eelsgGeqqRvaiaRaivnkPelllaDePtGnlDdelserildllkelnkrGttvivathdeelvervkkrvl 208
                +++ ++r +++l+ + + + +k+ p  ++sgG + R+++aRa+  kP+lll DePt  lD +    ++ l   l+k   t++v++hd++++ +v + +l
  MMETSP1137-20121227|696_1 181 ADSAEQRASAILSGLQFLEEQKNWPtAAFSGGWRMRISLARALFVKPRLLLLDEPTNHLDLHA---VIWLEGYLQKWKHTLVVVSHDRDFLTTVCTDIL 276
                56788999999999986655555551689*******************************876...55555666666789********99988766655 PP

  == domain 3    score: 34.5 bits;  conditional E-value: 5.6e-11
  TIGR02673   2 ielekvskeyaagveaLkdvslkiekgeflfltGasGaGkttllklllgaekpsrGeve 60 
                + +++vs++y+++ +  +dv++ ++  + + l+Ga G+Gk+tllkl+l  ++p+rGev+
  MMETSP1137-20121227|696_1 397 LAVDNVSFHYENQEDLFTDVDFGLNMDSRVALVGANGTGKSTLLKLMLSELTPTRGEVR 455
                6789*****************************************************97 PP

  == domain 4    score: 32.9 bits;  conditional E-value: 1.8e-10
  TIGR02673 114 iqkrveevlelvgledkak.alpeelsgGeqqRvaiaRaivnkPelllaDePtGnlDdelserildllkelnkrGttvivathdeelvervkkrvlele 211
                 +++++++l + gle +++ +  e+lsgG + Rv      +++ +lll DePt  lD e+   +++ l++++     v+v th+ +l+++v +++  +e
  MMETSP1137-20121227|696_1 499 STQEIRNALGKFGLEGHHHlQAIETLSGGQKSRVVFVELGLRRCHLLLLDEPTNHLDLETVDCLVKALHAFE---GGVLVITHNVSLINKVCNQIWVIE 594
                5688999*******97666155689********************************999888777776664...579999*********988877666 PP

>> TIGR01189  ccmA: heme ABC exporter, ATP-binding protein CcmA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.1   0.0    0.0002     0.012       5      45 ..      11      51 ..       7      59 .. 0.90
   2 !   27.2   0.1   9.4e-09   5.7e-07     117     173 ..     198     254 ..     173     267 .. 0.84
   3 !   78.2   0.1   2.3e-24   1.4e-22      10     188 ..     407     582 ..     397     591 .. 0.82

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 0.0002
  TIGR01189  5 elaveRgervlleglsfelaaGealvveGpnGiGKttLLRi 45
               +++++Rg+++l+++ +++l  G    + GpnG GK+t++  
  MMETSP1137-20121227|696_1 11 KFSISRGGKTLFHDAKLSLIHGRRYGLIGPNGCGKSTVMHA 51
               56899********************************9865 PP

  == domain 2    score: 27.2 bits;  conditional E-value: 9.4e-09
  TIGR01189 117 LsgledlpvaqLsAGqkrRlalarLllskaplWiLDEPttalDkegvellaellaaH 173
                L++ ++ p+a+ s G + R++lar l  k +l +LDEPt  lD ++v  l+  l++ 
  MMETSP1137-20121227|696_1 198 LEEQKNWPTAAFSGGWRMRISLARALFVKPRLLLLDEPTNHLDLHAVIWLEGYLQKW 254
                7788999****************************************9999988765 PP

  == domain 3    score: 78.2 bits;  conditional E-value: 2.3e-24
  TIGR01189  10 RgervlleglsfelaaGealvveGpnGiGKttLLRilaGLlkpesGevelndkelaeqrdelaeellylgHldglKaeLsalEnLkfyaallqseqktveealekvgLsgledlp.vaqLsAGqkrRlalarLllskaplWiLDEPttalDkegvellaellaaHlargGivllathqdl 188
                 +++ l+++++f l+    ++++G nG+GK+tLL+++   l+p+ Gev+ + +    + ++ + + l +g + +  + Ls +  L +    +++  +++ +al k gL+g+++l  +++Ls Gqk R+ +  L l +  l +LDEPt  lD e+v+ l ++l  H+ +gG+ +++   +l
  MMETSP1137-20121227|696_1 407 ENQEDLFTDVDFGLNMDSRVALVGANGTGKSTLLKLMLSELTPTRGEVRQSRSCKIGVYNQHSCDQLAAGMRLAKGEVLSPVSYLAHTFPSMST--QEIRNALGKFGLEGHHHLQaIETLSGGQKSRVVFVELGLRRCHLLLLDEPTNHLDLETVDCLVKAL--HAFEGGVLVITHNVSL 582
                35678********************************************986555555555555556677777777788888877766655553..46***************862689***************************************9988..7788998888876665 PP

>> TIGR01166  cbiO: cobalt ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.0    0.0001    0.0062       9      38 ..      23      52 ..      16      58 .. 0.85
   2 !   32.6   0.0   1.8e-10   1.1e-08     100     188 ..     182     266 ..     149     268 .. 0.80
   3 !   31.1   0.0   5.2e-10   3.2e-08       1      50 [.     406     455 ..     406     473 .. 0.94
   4 !   34.8   0.0     4e-11   2.4e-09     105     190 .]     500     583 ..     488     583 .. 0.88

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 0.0001
  TIGR01166  9 kglnlavergevlallGanGaGkstlllhl 38
               ++ +l++ +g++ +l+G+nG+Gkst+++ +
  MMETSP1137-20121227|696_1 23 HDAKLSLIHGRRYGLIGPNGCGKSTVMHAI 52
               667888999*****************9875 PP

  == domain 2    score: 32.6 bits;  conditional E-value: 1.8e-10
  TIGR01166 100 seaeverrvrealaavd.isgleerpthllsgGekkrvaiagavalrpdvllldePtagldpaGaeqlleilrklreeGktvvisthdvd 188
                +   +e+r +  l+ ++ +++ ++ pt  +sgG + r+++a a+ ++p++llldePt  ld + +  l   l+k +   +t+v+ +hd d
  MMETSP1137-20121227|696_1 182 DS--AEQRASAILSGLQfLEEQKNWPTAAFSGGWRMRISLARALFVKPRLLLLDEPTNHLDLHAVIWLEGYLQKWK---HTLVVVSHDRD 266
                43..3455555566555234567789***********************************999888888877765...68999999977 PP

  == domain 3    score: 31.1 bits;  conditional E-value: 5.2e-10
  TIGR01166   1 yedeaevlkglnlavergevlallGanGaGkstlllhlnGllrPksGkvl 50 
                ye++ + ++++++ ++  +++al+GanG+Gkstll+ +   l P+ G+v 
  MMETSP1137-20121227|696_1 406 YENQEDLFTDVDFGLNMDSRVALVGANGTGKSTLLKLMLSELTPTRGEVR 455
                8999999****************************************996 PP

  == domain 4    score: 34.8 bits;  conditional E-value: 4e-11
  TIGR01166 105 errvrealaavdisglee.rpthllsgGekkrvaiagavalrpdvllldePtagldpaGaeqlleilrklreeGktvvisthdvdla 190
                ++ +r+al + +++g ++ +++++lsgG+k rv        r ++llldePt  ld + ++ l+++l+ ++  G  v++ th+v l+
  MMETSP1137-20121227|696_1 500 TQEIRNALGKFGLEGHHHlQAIETLSGGQKSRVVFVELGLRRCHLLLLDEPTNHLDLETVDCLVKALHAFE--G-GVLVITHNVSLI 583
                56799********98776599**************9999999**********************9999874..3.466669999885 PP

>> TIGR02868  CydC: thiol reductant ABC exporter, CydC subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.9   0.0   0.00023     0.014     349     381 ..      20      52 ..       6      60 .. 0.86
   2 !   37.5   0.0   3.8e-12   2.3e-10     470     510 ..     207     247 ..     199     265 .. 0.81
   3 !   72.8   0.1   7.7e-23   4.7e-21     325     529 ..     389     579 ..     371     580 .. 0.76

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 0.00023
  TIGR02868 349 evlkgvsldlepGervavvGasGaGKstLlall 381
                + +++ +l l  G+r  ++G+ G+GKst+++++
  MMETSP1137-20121227|696_1  20 TLFHDAKLSLIHGRRYGLIGPNGCGKSTVMHAI 52 
                46788899********************99876 PP

  == domain 2    score: 37.5 bits;  conditional E-value: 3.8e-12
  TIGR02868 470 arlSGGerqRlalARaLladapvllLDEPtehLDaeteeel 510
                a++SGG r R+ lARaL  + ++llLDEPt hLD ++   l
  MMETSP1137-20121227|696_1 207 AAFSGGWRMRISLARALFVKPRLLLLDEPTNHLDLHAVIWL 247
                78********************************9876554 PP

  == domain 3    score: 72.8 bits;  conditional E-value: 7.7e-23
  TIGR02868 325 aeaaasekptlelrdlsvsypgaeevlkgvsldlepGervavvGasGaGKstLlallaglldplkGevtldgvsvaslsesevrrvvsvlaqdaHlFdttvreNlrlarpda..............tdeellaaLervgLadwlraLpdGldtklgeggarlSGGerqRlalARaLladapvllLDEPtehLDaeteeelledLlaaeegrtvvlvthr 529
                a++ a   p l + ++s++y+++e  +++v++ l+  +rva+vGa G+GKstLl+l++  l p +Gev  +    +          + v +q+      ++   +rla++++              + +e+ +aL + gL+ + +           +  ++lSGG++ R+++    l    +llLDEPt hLD et + l+++L a e g  v+++th+
  MMETSP1137-20121227|696_1 389 AGEIA--MPILAVDNVSFHYENQEDLFTDVDFGLNMDSRVALVGANGTGKSTLLKLMLSELTPTRGEVRQSR--SC---------KIGVYNQHS---CDQLAAGMRLAKGEVlspvsylahtfpsmSTQEIRNALGKFGLEGHHHL----------QAIETLSGGQKSRVVFVELGLRRCHLLLLDEPTNHLDLETVDCLVKALHAFEGG--VLVITHN 579
                44444..48999********************************************************9443..22.........344444433...2344455555555554422222222233377777777777777766554..........34578*******************************************998766..8999997 PP

>> TIGR03864  PQQ_ABC_ATP: ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.0   9.1e-05    0.0055       6      47 ..      11      52 ..       6      84 .. 0.87
   2 !   40.5   0.0   7.2e-13   4.4e-11      97     170 ..     172     246 ..     153     261 .. 0.82
   3 !   54.9   0.5   2.8e-17   1.7e-15       2     211 ..     397     599 ..     396     621 .. 0.76

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 9.1e-05
  TIGR03864  6 glsfaygkrralddvsltvakgefvaLLGpnGaGkstLfsll 47
               + s + g ++ ++d +l++ +g+   L+GpnG Gkst++  +
  MMETSP1137-20121227|696_1 11 KFSISRGGKTLFHDAKLSLIHGRRYGLIGPNGCGKSTVMHAI 52
               5677778899999************************99765 PP

  == domain 2    score: 40.5 bits;  conditional E-value: 7.2e-13
  TIGR03864  97 yhaaLhGlsraeaeerieealarlg.laeraeekvreLnGGhrrrveiarallhePklLLlDeatvGLDiesraa 170
                 + +L  ++  +ae+r +++l+ l+ l+e+++    + +GG r r+ +aral  +P+lLLlDe+t  LD+++   
  MMETSP1137-20121227|696_1 172 VYDELADIGADSAEQRASAILSGLQfLEEQKNWPTAAFSGGWRMRISLARALFVKPRLLLLDEPTNHLDLHAVIW 246
                5778999****************993455666679**********************************988655 PP

  == domain 3    score: 54.9 bits;  conditional E-value: 2.8e-17
  TIGR03864   2 leveglsfaygkrral.ddvsltvakgefvaLLGpnGaGkstLfslltrLyeakegeikva.GldlrrapkealarlGvvfqqstlDldlsveqnlryhaaLhGlsraeaeerieealarlglaeraeek.vreLnGGhrrrveiarallhePklLLlDeatvGLDiesraalveevrelvreeglsvLWathlvdeveae.drlvvlhkGkvl 211
                l+v+++sf+y +++ l  dv++ ++  + vaL+G nG GkstL++l+   ++ ++ge++    +++   +++   +l    +         v   ++y a  h +++ + +++i++al ++gl+ +++ + +++L+GG++ rv  +   l + +lLLlDe+t  LD+e+ + lv+++++       +vL  th v  +++  +++ v++  kv 
  MMETSP1137-20121227|696_1 397 LAVDNVSFHYENQEDLfTDVDFGLNMDSRVALVGANGTGKSTLLKLMLSELTPTRGEVRQSrSCKIGVYNQHSCDQLAAGMRL----AKGEVLSPVSYLA--HTFPSMS-TQEIRNALGKFGLEGHHHLQaIETLSGGQKSRVVFVELGLRRCHLLLLDEPTNHLDLETVDCLVKALHAFE----GGVLVITHNVSLINKVcNQIWVIEDRKVN 599
                789*******987755389**************************99888889999986421333333333333333332222....1234566677776..6777765.568**********998875549**************************************99999998876....47788899888887642667777776664 PP

>> TIGR03608  L_ocin_972_ABC: putative bacteriocin export ABC transporter, lactococcin 972 group
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.0   2.2e-06   0.00013       8      51 ..      16      59 ..      11      81 .. 0.86
   2 !   30.7   0.0   7.1e-10   4.3e-08     114     196 ..     187     267 ..     177     277 .. 0.81
   3 !   17.2   0.0   9.6e-06   0.00058       3      55 ..     401     454 ..     399     472 .. 0.81
   4 !   43.2   0.0     1e-13   6.2e-12     112     202 ..     500     589 ..     490     593 .. 0.84

  Alignments for each domain:
  == domain 1    score: 19.3 bits;  conditional E-value: 2.2e-06
  TIGR03608  8 fkdkeilkklslkiekGelvaivGesGsGKstlLnilgllekkd 51
                + k+++++ +l++ +G+ + ++G  G+GKst++  +g+ e ++
  MMETSP1137-20121227|696_1 16 RGGKTLFHDAKLSLIHGRRYGLIGPNGCGKSTVMHAIGTGEVEE 59
               56799********************************9877655 PP

  == domain 2    score: 30.7 bits;  conditional E-value: 7.1e-10
  TIGR03608 114 kkkevlekvgl.ekklkkkiyelsgGekqRvalarillkeselilADEPtgsLDkknreevlellkelkeegktiiivtHdpev 196
                +   +l  +++ e++++     +sgG + R++lar+l+ +++l+l DEPt  LD +   +v+ l   l++  +t+++v Hd   
  MMETSP1137-20121227|696_1 187 RASAILSGLQFlEEQKNWPTAAFSGGWRMRISLARALFVKPRLLLLDEPTNHLDLH---AVIWLEGYLQKWKHTLVVVSHDRDF 267
                5556666666546777778889********************************75...67877788888899*******9864 PP

  == domain 3    score: 17.2 bits;  conditional E-value: 9.6e-06
  TIGR03608   3 niskkfkdk.eilkklslkiekGelvaivGesGsGKstlLnilgllekkdsgkv 55 
                n+s +++++  +++++++ ++  + va+vG  G+GKstlL ++    ++ +g+v
  MMETSP1137-20121227|696_1 401 NVSFHYENQeDLFTDVDFGLNMDSRVALVGANGTGKSTLLKLMLSELTPTRGEV 454
                6777776653799***************************98866666666666 PP

  == domain 4    score: 43.2 bits;  conditional E-value: 1e-13
  TIGR03608 112 ekkkkevlekvgl.ekklkkkiyelsgGekqRvalarillkeselilADEPtgsLDkknreevlellkelkeegktiiivtHdpevaek.adr 202
                ++++ ++l k+gl  ++  + i +lsgG+k Rv  + + l+ ++l+l DEPt  LD ++ + +++ l+  +     ++++tH+ ++ +k +++
  MMETSP1137-20121227|696_1 500 TQEIRNALGKFGLeGHHHLQAIETLSGGQKSRVVFVELGLRRCHLLLLDEPTNHLDLETVDCLVKALHAFEG---GVLVITHNVSLINKvCNQ 589
                5778899******55667799********************************************9998753...47888***9876651554 PP

>> TIGR01188  drrA: daunorubicin resistance ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.0   9.4e-05    0.0057      13      64 ..      26      77 ..      19     116 .. 0.75
   2 !   45.2   0.0   2.6e-14   1.6e-12      91     230 ..     174     311 ..     164     355 .. 0.77
   3 !   53.1   0.4     1e-16   6.1e-15      10     268 ..     414     665 ..     405     695 .. 0.72

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 9.4e-05
  TIGR01188 13 nlkveegevfglLGPnGAGKtttikmLttllkPdsGtarvaGyDvvrepdev 64
               +l++ +g  +gl+GPnG GK+t+++ + t    +  +a+  G D++   +ev
  MMETSP1137-20121227|696_1 26 KLSLIHGRRYGLIGPNGCGKSTVMHAIGTGEVEEIRNAIPPGMDILLVEQEV 77
               677788999**************99888766666666666666665555555 PP

  == domain 2    score: 45.2 bits;  conditional E-value: 2.6e-14
  TIGR01188  91 gelyglpkkeaeeraeellelve.lkeaadkkvktysgGmrrrlelaasliaqPevlfLDEPtiGLDprtrraiwdlieelkkegvtilltthyleeadkladrvaiidkGkiiaedtpeeLKervgkevveverrdikel 230
                 el ++  + ae+ra+ +l  ++ l e+++ +   +sgG r r++la++l ++P++l LDEPt  LD ++  +iw     l+k ++t+++ +h+ +   +++  +    + k++   +  e+ e+v +  +e  +++ +  
  MMETSP1137-20121227|696_1 174 DELADIGADSAEQRASAILSGLQfLEEQKNWPTAAFSGGWRMRISLARALFVKPRLLLLDEPTNHLDLHA--VIWLE-GYLQKWKHTLVVVSHDRDFLTTVCTDILHCWRSKLVHYAGNYEVFEKVFASKLEEYNKEYERQ 311
                57889999************9993456677899**********************************975..66643.45666789********99999999999999999999998888888877776666333333222 PP

  == domain 3    score: 53.1 bits;  conditional E-value: 1e-16
  TIGR01188  10 dgvnlkveegevfglLGPnGAGKtttikmLttllkPdsGtarvaGyDvvrepdevRrsigvvpq....kasvdedLtarenlellgelyglpkkeaeeraeellelvelk.eaadkkvktysgGmrrrlelaasliaqPevlfLDEPtiGLDprtrraiwdlieelkkegvtilltthyleeadkladrvaiidkGkiiae.dtpeeLKervgkevveverrdikelkkevsllaaelteslleleavevdsdkvklkveeadet 268
                 +v++ ++ ++ ++l+G nG GK+t++k++ + l+P+ G++        r++++   +igv  q    + ++   L+  e l  ++ l     ++  + +++ l  + l  +   + ++t+sgG++ r+  +   + + ++l LDEPt  LD +t +    l+++l+  +  +l+ th++  ++k+++++ +i+  k+  + +  ee ++ + ++   +  +d +  k e+++ aa   + ++ + ++  ++ k k + e++ ++
  MMETSP1137-20121227|696_1 414 TDVDFGLNMDSRVALVGANGTGKSTLLKLMLSELTPTRGEV--------RQSRSC--KIGVYNQhscdQLAAGMRLAKGEVLSPVSYLAHTFPSMSTQEIRNALGKFGLEgHHHLQAIETLSGGQKSRVVFVELGLRRCHLLLLDEPTNHLDLETVD---CLVKALHAFEGGVLVITHNVSLINKVCNQIWVIEDRKVNRFaGEFEEYRDMLAEQLNLLYDEDPEVKKRERERAAAAALKAEDAALEADPSKPKSKAQRERERKE 665
                689999999******************************95........566654..57766651111456677888889999999999999999999***********82556689****************99*****************99865...567888888899*************************99862677888887766665544444443333333333333333223333333333333332222222 PP

>> TIGR02315  ABC_phnC: phosphonate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.9   0.0    0.0002     0.012      14      49 ..      18      53 ..      12      92 .. 0.76
   2 !   31.8   0.0   3.2e-10   1.9e-08     122     237 ..     184     296 ..     169     301 .. 0.81
   3 !   53.5   0.0   7.6e-17   4.6e-15       1     224 [.     396     598 ..     396     620 .. 0.76

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 0.0002
  TIGR02315 14 gkqalknvnleikkGelvaviGlsGaGkstllrsin 49
               gk+ +++ +l++ +G   ++iG+ G Gkst++++i 
  MMETSP1137-20121227|696_1 18 GKTLFHDAKLSLIHGRRYGLIGPNGCGKSTVMHAIG 53
               6788999*************************9985 PP

  == domain 2    score: 31.8 bits;  conditional E-value: 3.2e-10
  TIGR02315 122 dkekAlelLervg.laelaakradqLsGGqqqRvaiaRalaqqpklilaDEPiasLDpksskqvmdllkrinkekgitvivnlHqvdlakkyadrivglkageivfdgasselddev 237
                 +++A ++L+ ++ l+e+++  + + sGG + R+++aRal  +p+l+l DEP+  LD ++   +  +l    ++ + t +v  H+ d+ +  ++ i+    +++v+++   e+ ++v
  MMETSP1137-20121227|696_1 184 AEQRASAILSGLQfLEEQKNWPTAAFSGGWRMRISLARALFVKPRLLLLDEPTNHLDLHAVIWLEGYL----QKWKHTLVVVSHDRDFLTTVCTDILHCWRSKLVHYAGNYEVFEKV 296
                5678888999888345566677899********************************87765544444....566678888889999999999999999999998887777766665 PP

  == domain 3    score: 53.5 bits;  conditional E-value: 7.6e-17
  TIGR02315   1 llevenlskvypngkqalknvnleikkGelvaviGlsGaGkstllrsinrlveissgsillegkevtklkkkelrklrkkigmifqeynlierltvlenvLsgrlgakstlksllglfseedkekAlelLervglaelaa.kradqLsGGqqqRvaiaRalaqqpklilaDEPiasLDpksskqvmdllkrinkekgitvivnlHqvdlakkyadrivglkagei 224
                +l v+n+s +y+n++  + +v++ ++    va++G  G+Gkstll+ +    ++++g++  +                 kig+  q+    ++l +   + +g +   s +  l ++f++  +++  ++L ++gl+ +++ +  ++LsGGq+ Rv      +++ +l+l DEP+  LD ++   ++++l+    e    v+v  H+v+l +k +++i  +++ ++
  MMETSP1137-20121227|696_1 396 ILAVDNVSFHYENQEDLFTDVDFGLNMDSRVALVGANGTGKSTLLKLMLSELTPTRGEVRQSR--------------SCKIGVYNQHS--CDQLAAGMRLAKGEV--LSPVSYLAHTFPSMSTQEIRNALGKFGLEGHHHlQAIETLSGGQKSRVVFVELGLRRCHLLLLDEPTNHLDLETVDCLVKALHAF--EG--GVLVITHNVSLINKVCNQIWVIEDRKV 598
                689*******************************************87666667776654322..............22344443432..233333333333333..2345566788888999999999******98766156799**************9********************99999988765..33..456667*************99998887 PP

>> TIGR01842  type_I_sec_PrtD: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.5   0.0    0.0045      0.27     331     364 ..      19      52 ..      11      66 .. 0.85
   2 !   36.7   0.0   6.4e-12   3.9e-10     453     524 ..     207     276 ..     204     296 .. 0.76
   3 !   30.5   0.0   4.9e-10   2.9e-08     296     377 ..     372     456 ..     368     473 .. 0.85
   4 !   31.5   0.0   2.5e-10   1.5e-08     453     535 ..     522     602 ..     517     612 .. 0.90

  Alignments for each domain:
  == domain 1    score: 7.5 bits;  conditional E-value: 0.0045
  TIGR01842 331 kktlkgisfalkaGealaiiGpsgsGkssLarll 364
                k+ +++ +++l  G   ++iGp g Gks++++ +
  MMETSP1137-20121227|696_1  19 KTLFHDAKLSLIHGRRYGLIGPNGCGKSTVMHAI 52 
                6778999**********************98876 PP

  == domain 2    score: 36.7 bits;  conditional E-value: 6.4e-12
  TIGR01842 453 aaLsgGqrqRiaLaRalygdPklvvLDePnanLDeeGeqalakalkelkarkitvvvithrpsllelv.dkil 524
                aa sgG r Ri+LaRal+ +P+l++LDeP   LD +  + l      l++ k t vv++h    l++v   il
  MMETSP1137-20121227|696_1 207 AAFSGGWRMRISLARALFVKPRLLLLDEPTNHLDLHAVIWLEG---YLQKWKHTLVVVSHDRDFLTTVcTDIL 276
                578*******************************986666665...566777899999997776665414555 PP

  == domain 3    score: 30.5 bits;  conditional E-value: 4.9e-10
  TIGR01842 296 elleelpareealklPepeg....elevenvslvppeekkktlkgisfalkaGealaiiGpsgsGkssLarllvGvwlpasGsvrl 377
                ell+++++++ ++++P         l+v+nvs+   +++ + +++++f l+  + +a++G+ g+Gks+L +l++   +p++G+vr 
  MMETSP1137-20121227|696_1 372 ELLDQIKSNNMHIHFPVAGEiampILAVDNVSFHYENQE-DLFTDVDFGLNMDSRVALVGANGTGKSTLLKLMLSELTPTRGEVRQ 456
                899999999999999975431222589999999776665.99******************************************95 PP

  == domain 4    score: 31.5 bits;  conditional E-value: 2.5e-10
  TIGR01842 453 aaLsgGqrqRiaLaRalygdPklvvLDePnanLDeeGeqalakalkelkarkitvvvithrpsllelv.dkilvlkdGalkafG 535
                ++LsgGq+ R+       +  +l++LDeP   LD e    l+kal++    +  v+vith +sl++ v ++i v++d ++++f 
  MMETSP1137-20121227|696_1 522 ETLSGGQKSRVVFVELGLRRCHLLLLDEPTNHLDLETVDCLVKALHAF---EGGVLVITHNVSLINKVcNQIWVIEDRKVNRFA 602
                69****************************************999766...6789**********865499********99984 PP

>> TIGR00960  3a0501s02: type II secretory pathway family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   0.0     0.041       2.5      20      50 ..      23      53 ..      15      71 .. 0.82
   2 !   37.2   0.0   8.7e-12   5.3e-10     111     211 ..     180     278 ..     172     283 .. 0.86
   3 !   61.1   0.0   4.4e-19   2.7e-17       3     212 ..     398     594 ..     396     598 .. 0.81

  Alignments for each domain:
  == domain 1    score: 5.6 bits;  conditional E-value: 0.041
  TIGR00960 20 dnvtvkiekGelvflvGhsGaGkstllklil 50
               ++ ++++ +G    l+G+ G+Gkst+++ i 
  MMETSP1137-20121227|696_1 23 HDAKLSLIHGRRYGLIGPNGCGKSTVMHAIG 53
               56667777888888*************9885 PP

  == domain 2    score: 37.2 bits;  conditional E-value: 8.7e-12
  TIGR00960 111 kgreieervsaalekvGlkdkakalPv.qlsgGeqqrvaiaravvnkPallladePtgnlddelsrdilelleevnraGttvlvathdenlveskrkrvltl 211
                 ++ +e+r+sa l  + + + +k+ P+  +sgG + r+++ara+  kP lll dePt  ld +    ++ l   +++   t++v +hd++++ +    +l+ 
  MMETSP1137-20121227|696_1 180 GADSAEQRASAILSGLQFLEEQKNWPTaAFSGGWRMRISLARALFVKPRLLLLDEPTNHLDLHA---VIWLEGYLQKWKHTLVVVSHDRDFLTTVCTDILHC 278
                467899********9999999999996369*******************************864...6777777888889***********99998888765 PP

  == domain 3    score: 61.1 bits;  conditional E-value: 4.4e-19
  TIGR00960   3 kfeqvskaykgaaelaldnvtvkiekGelvflvGhsGaGkstllklilgiekpsaGkirvsgq.dltklrdrevpflrrqiGivfqdfkllsdrtvydnvalalriiGvkgreieervsaalekvGlkdkakalP.vqlsgGeqqrvaiaravvnkPallladePtgnlddelsrdilelleevnraGttvlvathdenlveskrkrvltls 212
                 +++vs +y+  ++  + +v + ++  + v lvG  G+Gkstllkl+l+  +p++G++r s   +++ ++++    l    G+       l + +v+  v     ++ + +    + +++al k Gl+++++     +lsgG++ rv      +++ +lll dePt  ld e+   ++   + ++     vlv th+ +l+++  +++ +++
  MMETSP1137-20121227|696_1 398 AVDNVSFHYENQED-LFTDVDFGLNMDSRVALVGANGTGKSTLLKLMLSELTPTRGEVRQSRScKIGVYNQHSCDQLAA--GM------RLAKGEVLSPVSY---LAHTFPSMSTQEIRNALGKFGLEGHHHLQAiETLSGGQKSRVVFVELGLRRCHLLLLDEPTNHLDLETVDCLV---KALHAFEGGVLVITHNVSLINKVCNQIWVIE 594
                6799*****99988.899****************************************988642777777777777754..43......3455566666653...344455566667789********9988665168********************************99877655...555555668999*********9988887665 PP

>> TIGR03797  NHLM_micro_ABC2: NHLM bacteriocin system ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.0   0.0     0.003      0.18     459     497 ..      12      50 ..       7      55 .. 0.90
   2 !   29.0   0.0   1.4e-09   8.3e-08     588     644 ..     208     264 ..     205     295 .. 0.84
   3 !   34.9   0.0   2.3e-11   1.4e-09     452     510 ..     397     454 ..     388     458 .. 0.93
   4 !   33.1   0.0   7.7e-11   4.6e-09     586     670 ..     521     607 ..     512     614 .. 0.92

  Alignments for each domain:
  == domain 1    score: 8.0 bits;  conditional E-value: 0.003
  TIGR03797 459 FrYekdgplvLddvslkiepGefvaivGaSGsGKStllr 497
                F  ++ g++ ++d  l+   G   +++G+ G+GKSt++ 
  MMETSP1137-20121227|696_1  12 FSISRGGKTLFHDAKLSLIHGRRYGLIGPNGCGKSTVMH 50 
                667788999999999999*******************96 PP

  == domain 2    score: 29.0 bits;  conditional E-value: 1.4e-09
  TIGR03797 588 tlSGGQrQRlliAralvrkPrillfDEATSALDNrtQaiVsesleklkvtRiviAHR 644
                + SGG r R+ +Aral  kPr+ll+DE T  LD ++       l+k k t +v+ H 
  MMETSP1137-20121227|696_1 208 AFSGGWRMRISLARALFVKPRLLLLDEPTNHLDLHAVIWLEGYLQKWKHTLVVVSHD 264
                68******************************************************4 PP

  == domain 3    score: 34.9 bits;  conditional E-value: 2.3e-11
  TIGR03797 452 ievdrvtFrYekdgplvLddvslkiepGefvaivGaSGsGKStllrlLLgFekPesGsv 510
                ++vd+v+F+Y ++++  + dv +  +    va+vGa G+GKStll+l+L+  +P+ G+v
  MMETSP1137-20121227|696_1 397 LAVDNVSFHY-ENQEDLFTDVDFGLNMDSRVALVGANGTGKSTLLKLMLSELTPTRGEV 454
                579*******.778899****************************************98 PP

  == domain 4    score: 33.1 bits;  conditional E-value: 7.7e-11
  TIGR03797 586 ggtlSGGQrQRlliAralvrkPrillfDEATSALDNrtQaiVsesleklkvtRiviAHRLSTirn.adrilvleeGrvve.qGsyee 670
                 +tlSGGQ+ R++      r+ ++ll+DE T  LD +t  + +++l++++   +vi H +S i++ +++i v+e+ +v    G++ee
  MMETSP1137-20121227|696_1 521 IETLSGGQKSRVVFVELGLRRCHLLLLDEPTNHLDLETVDCLVKALHAFEGGVLVITHNVSLINKvCNQIWVIEDRKVNRfAGEFEE 607
                589************************************************************8659********999864677776 PP

>> TIGR02211  LolD_lipo_ex: lipoprotein releasing system, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.9   0.0    0.0018      0.11      19      53 ..      20      54 ..       8      76 .. 0.89
   2 !   42.7   0.0   1.6e-13   9.6e-12     116     207 ..     182     270 ..     176     284 .. 0.82
   3 !   23.0   0.0   1.7e-07     1e-05      10      63 ..     405     455 ..     396     468 .. 0.85
   4 !   26.5   0.0   1.5e-08   8.9e-07     119     213 ..     500     591 ..     484     599 .. 0.79

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 0.0018
  TIGR02211 19 evlkgvsleiekgelvaivGssGsGkstllhllgg 53
               +++++ +l++ +g   +++G  G Gkst++h +g+
  MMETSP1137-20121227|696_1 20 TLFHDAKLSLIHGRRYGLIGPNGCGKSTVMHAIGT 54
               5789999************************9986 PP

  == domain 2    score: 42.7 bits;  conditional E-value: 1.6e-13
  TIGR02211 116 keakerakellekvg.lekrinkkpselsGGerqrvaiaralvnkPklvladePtgnldkktakkifelllelnkekntallvvthdlelakk 207
                 +a++ra ++l+ ++ le++ n  ++++sGG r r+++aral  kP+l+l dePt +ld ++      l   l ++ + +l+vv+hd+++   
  MMETSP1137-20121227|696_1 182 DSAEQRASAILSGLQfLEEQKNWPTAAFSGGWRMRISLARALFVKPRLLLLDEPTNHLDLHAVI---WLEGYL-QKWKHTLVVVSHDRDFLTT 270
                67999*******998467777888889********************************98644...344444.4456679******998765 PP

  == domain 3    score: 23.0 bits;  conditional E-value: 1.7e-07
  TIGR02211  10 sykegkleievlkgvsleiekgelvaivGssGsGkstllhllggldkptsGevl 63 
                +y+   ++ +++++v++ ++    va+vG+ G+Gkstll l+ +  +pt Gev 
  MMETSP1137-20121227|696_1 405 HYE---NQEDLFTDVDFGLNMDSRVALVGANGTGKSTLLKLMLSELTPTRGEVR 455
                443...4568999***************************9988889****996 PP

  == domain 4    score: 26.5 bits;  conditional E-value: 1.5e-08
  TIGR02211 119 kerakellekvglekrinkkp.selsGGerqrvaiaralvnkPklvladePtgnldkktakkifelllelnkekntallvvthdlelakkldrvle 213
                 ++  + l k+gle + + ++   lsGG++ rv      + + +l+l dePt +ld +t +    l++ l+ + + ++lv+th+ +l++k+ +++ 
  MMETSP1137-20121227|696_1 500 TQEIRNALGKFGLEGHHHLQAiETLSGGQKSRVVFVELGLRRCHLLLLDEPTNHLDLETVDC---LVKALH-AFEGGVLVITHNVSLINKVCNQIW 591
                455667789999987766665156*************99*****************998765...555554.4567899**********9877664 PP

>> TIGR00972  3a0107s01c2: phosphate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   3.5e-05    0.0021       6      48 ..      11      53 ..       7      90 .. 0.76
   2 !   46.8   0.0   8.3e-15     5e-13     141     242 ..     205     304 ..     182     308 .. 0.90
   3 !   16.1   0.0   1.9e-05    0.0011       2      47 ..     397     443 ..     396     467 .. 0.86
   4 !   22.9   0.0   1.6e-07   9.9e-06     143     218 ..     522     595 ..     502     612 .. 0.82

  Alignments for each domain:
  == domain 1    score: 15.3 bits;  conditional E-value: 3.5e-05
  TIGR00972  6 nlklfygekealkdvnleikknkvtaliGpsGcGkstllrsln 48
               +++++ g k+  +d +l++ + +  +liGp GcGkst+++++ 
  MMETSP1137-20121227|696_1 11 KFSISRGGKTLFHDAKLSLIHGRRYGLIGPNGCGKSTVMHAIG 53
               566777888889999999999999***************9985 PP

  == domain 2    score: 46.8 bits;  conditional E-value: 8.3e-15
  TIGR00972 141 salsLsGGqqqrlciaralavePevlLlDePtsaLDpiatekieeliqeLkkkytivivthnmqqaarvsdktaffleGelveegeteqifekpkekktedy 242
                 + + sGG + r+++aral v+P +lLlDePt  LD  a+  +e  +q+ k   t+v+v h+ ++ + v   +   ++ +lv ++   ++fek   +k e+y
  MMETSP1137-20121227|696_1 205 PTAAFSGGWRMRISLARALFVKPRLLLLDEPTNHLDLHAVIWLEGYLQKWK--HTLVVVSHDRDFLTTVCTDILHCWRSKLVHYAGNYEVFEKVFASKLEEY 304
                56789******************************************9765..79*************************************9998888888 PP

  == domain 3    score: 16.1 bits;  conditional E-value: 1.9e-05
  TIGR00972   2 levknlklfygekeal.kdvnleikknkvtaliGpsGcGkstllrsl 47 
                l+v n+++ y ++e l +dv++ ++ ++ +al+G  G+Gkstll+ +
  MMETSP1137-20121227|696_1 397 LAVDNVSFHYENQEDLfTDVDFGLNMDSRVALVGANGTGKSTLLKLM 443
                678999****998855279*************************975 PP

  == domain 4    score: 22.9 bits;  conditional E-value: 1.6e-07
  TIGR00972 143 lsLsGGqqqrlciaralavePevlLlDePtsaLDpiatekieeliqeLkkkytivivthnmqqaarvsdktaffle 218
                 +LsGGq+ r++       + ++lLlDePt  LD +++  + + ++  +    ++++thn++  ++v +++ ++ +
  MMETSP1137-20121227|696_1 522 ETLSGGQKSRVVFVELGLRRCHLLLLDEPTNHLDLETVDCLVKALHAFE--GGVLVITHNVSLINKVCNQIWVIED 595
                58*********9998878899*************987776666666554..579999**********999887754 PP

>> TIGR02769  nickel_nikE: nickel import ATP-binding protein NikE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.3   0.0   0.00031     0.019      20      55 ..      15      50 ..       9      58 .. 0.88
   2 !   38.2   0.0     4e-12   2.4e-10     116     229 ..     174     283 ..     157     296 .. 0.85
   3 !   45.1   0.1     3e-14   1.8e-12      22     228 ..     408     597 ..     397     604 .. 0.84

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 0.00031
  TIGR02769 20 kkqrkavldnvslsleeGetvallGrsGaGkstlar 55
                ++ k+++++ +lsl +G   +l+G  G+Gkst+ +
  MMETSP1137-20121227|696_1 15 SRGGKTLFHDAKLSLIHGRRYGLIGPNGCGKSTVMH 50
               56778999*************************865 PP

  == domain 2    score: 38.2 bits;  conditional E-value: 4e-12
  TIGR02769 116 rhltsldeserkariaellelvelrsevldklPrqlsGGqlqriniaralavePklivldeavsnldlvlqasilellkklkqefGlaylfithdlrlvqkfaqrvlvldeGqi 229
                 +l ++ +   ++r++++l+ +++ +e+ +   + +sGG   ri++aral v+P+l++lde    ldl+  +     l+   q+   + ++++hd     +++  +l   + ++
  MMETSP1137-20121227|696_1 174 DELADIGADSAEQRASAILSGLQFLEEQKNWPTAAFSGGWRMRISLARALFVKPRLLLLDEPTNHLDLHAVI----WLEGYLQKWKHTLVVVSHDRDFLTTVCTDILHCWRSKL 283
                5677888888999************999999999*********************************98644....455555566678999****9999999998876655555 PP

  == domain 3    score: 45.1 bits;  conditional E-value: 3e-14
  TIGR02769  22 qrkavldnvslsleeGetvallGrsGaGkstlarlllGlekPakGevsfrGqdlakldrkqrkafrrdvqlvfqdsisavnprks.vreiigePlrhltsldeserkariaellelvelrsevldklPrqlsGGqlqriniaralavePklivldeavsnldlvlqasilellkklkqefGlaylfithdlrlvqkfaqrvlvldeGq 228
                +++ ++++v++ l+    val+G  G+Gkstl +l+l    P++Gev+              ++   ++ +  q s   + + +  ++  +  P+  l +   s   + i + l + +l+ ++  +  + lsGGq  r+        + +l++lde    ldl     +++ l+++       +l+ith+++l++k+++++ v+++ +
  MMETSP1137-20121227|696_1 408 NQEDLFTDVDFGLNMDSRVALVGANGTGKSTLLKLMLSELTPTRGEVRQ------------SRSC--KIGVYNQHSCDQLAAGMRlAKGEVLSPVSYLAHTFPSMSTQEIRNALGKFGLEGHHHLQAIETLSGGQKSRVVFVELGLRRCHLLLLDEPTNHLDLETVDCLVKALHAF----EGGVLVITHNVSLINKVCNQIWVIEDRK 597
                5677899***************************************963............3333..46667777777777655414556788*****999999***********************************9998888899*************98766655555443....336799*****************99865 PP

>> TIGR03796  NHLM_micro_ABC1: NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   2.1e-05    0.0012     484     525 ..      11      52 ..       1      60 [. 0.89
   2 !   31.2   0.0   2.3e-10   1.4e-08     614     671 ..     207     264 ..     184     291 .. 0.90
   3 !   54.2   0.1   2.7e-17   1.6e-15     479     690 ..     398     599 ..     369     614 .. 0.84

  Alignments for each domain:
  == domain 1    score: 14.9 bits;  conditional E-value: 2.1e-05
  TIGR03796 484 tfgysaleapliedfslslkpGqrvAlvGgsGsGkstiaklv 525
                +f+ s+  + l +d +lsl +G+r  l+G+ G+Gkst+ + +
  MMETSP1137-20121227|696_1  11 KFSISRGGKTLFHDAKLSLIHGRRYGLIGPNGCGKSTVMHAI 52 
                689999999****************************98655 PP

  == domain 2    score: 31.2 bits;  conditional E-value: 2.3e-10
  TIGR03796 614 anlsGGqrqRleiARaLvknPsiLilDEatsaLDaetEkaidenlrrRgctciivaHR 671
                a +sGG r R+ +ARaL  +P +L+lDE t  LD ++   ++  l++   t ++v+H 
  MMETSP1137-20121227|696_1 207 AAFSGGWRMRISLARALFVKPRLLLLDEPTNHLDLHAVIWLEGYLQKWKHTLVVVSHD 264
                679******************************************************4 PP

  == domain 3    score: 54.2 bits;  conditional E-value: 2.7e-17
  TIGR03796 479 elrnvtfgysaleapliedfslslkpGqrvAlvGgsGsGkstiaklvaGlyepwsGeilfDgkpreeiprevlanslalvdqdivlfegtvrdnltlwdetipeedlvrAakDAaihdvilarpggyeaelaegganlsGGqrqRleiARaLvknPsiLilDEatsaLDaetEkaidenlrrRgctciivaHRLstiRd.cdeiivlerGkvv 690
                 ++nv+f y+++ + l  d+++ l+  +rvAlvG+ G+Gkst+ kl+    +p++Ge++     +  + ++     la     + l +g v   ++   +t p+ +         i++++ +   + +++l +  + lsGGq+ R+       ++  +L+lDE t  LD et   ++++l+     +++++H +s i   c++i v+e  kv 
  MMETSP1137-20121227|696_1 398 AVDNVSFHYENQ-EDLFTDVDFGLNMDSRVALVGANGTGKSTLLKLMLSELTPTRGEVRQSRSCKIGVYNQHSCDQLA---AGMRLAKGEVLSPVSYLAHTFPSMSTQ------EIRNALGKFGLEGHHHL-QAIETLSGGQKSRVVFVELGLRRCHLLLLDEPTNHLDLETVDCLVKALHAFEGGVLVITHNVSLINKvCNQIWVIEDRKVN 599
                578******987.789******************************************98777777776666555555...6899****************9987654......34444444433333333.44567************999*********************************************6549*******99885 PP

>> TIGR03740  galliderm_ABC: lantibiotic protection ABC transporter, ATP-binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0   1.5e-05   0.00088      13      47 ..      19      54 ..      10      65 .. 0.82
   2 !   27.2   0.0   9.7e-09   5.9e-07     103     171 ..     186     255 ..     179     278 .. 0.79
   3 !   49.4   0.0   1.6e-15   9.6e-14       1     203 [.     397     599 ..     397     617 .. 0.81

  Alignments for each domain:
  == domain 1    score: 16.8 bits;  conditional E-value: 1.5e-05
  TIGR03740 13 qavvnnvslkvkknsvygllGpnGaGkstllkll.t 47
               +++ ++ +l++ + + ygl+GpnG+Gkst++  + t
  MMETSP1137-20121227|696_1 19 KTLFHDAKLSLIHGRRYGLIGPNGCGKSTVMHAIgT 54
               5667778889999999***************97734 PP

  == domain 2    score: 27.2 bits;  conditional E-value: 9.7e-09
  TIGR03740 103 srieevlkivd.lentekkkakqfslGmkqrlGiaiallnkPkllildePtnGldPlGiqelreliksfp 171
                +r + +l+ ++ le+++   +  fs G + r+ +a al+ kP+ll+ldePtn ld   +  l   ++ ++
  MMETSP1137-20121227|696_1 186 QRASAILSGLQfLEEQKNWPTAAFSGGWRMRISLARALFVKPRLLLLDEPTNHLDLHAVIWLEGYLQKWK 255
                55666666666245556668999********************************888777766666655 PP

  == domain 3    score: 49.4 bits;  conditional E-value: 1.6e-15
  TIGR03740   1 letknlskkfkkqa.vvnnvslkvkknsvygllGpnGaGkstllklltGllrktsGeilldgr.ewtrkdlkkiGsliesPalyenltarenlkvrtlllglpesrieevlkivdlentek.kkakqfslGmkqrlGiaiallnkPkllildePtnGldPlGiqelreliksfpekGitvilsshilsevelladhiGiiseGklk 203
                l ++n+s ++++q+ +  +v++ ++ +s  +l+G nG+Gkstllkl+   l++t Ge+    + ++   + ++   l     l +         +  +  ++++++i + l + +le  +  +  + +s G k r+      l++ +ll+ldePtn ld   ++ l + +++f+  G  v++ +h +s +++++++i +i++ k++
  MMETSP1137-20121227|696_1 397 LAVDNVSFHYENQEdLFTDVDFGLNMDSRVALVGANGTGKSTLLKLMLSELTPTRGEVRQSRScKIGVYNQHSCDQLAAGMRLAKGEVLSPVSYLAHTFPSMSTQEIRNALGKFGLEGHHHlQAIETLSGGQKSRVVFVELGLRRCHLLLLDEPTNHLDLETVDCLVKALHAFEG-G--VLVITHNVSLINKVCNQIWVIEDRKVN 599
                568899999998862679***************************************986543255666666666666665555444333444456778899**************977661566889********999999*****************9999999999999964.4..55568****************998874 PP

>> TIGR00958  3a01208: antigen peptide transporter 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.7   0.0   0.00039     0.024     491     525 ..      16      50 ..      12      54 .. 0.88
   2 !   26.5   0.0   6.8e-09   4.1e-07     618     673 ..     209     264 ..     205     295 .. 0.79
   3 !   24.5   0.0   2.6e-08   1.6e-06     482     538 ..     400     454 ..     376     472 .. 0.88
   4 !   29.8   0.0   6.5e-10   3.9e-08     617     699 ..     523     607 ..     489     617 .. 0.88

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 0.00039
  TIGR00958 491 rpdkpvlkdLtftlepGevvalVGPsGsGKStvaa 525
                r  k +++d  ++l  G+   l+GP+G GKStv+ 
  MMETSP1137-20121227|696_1  16 RGGKTLFHDAKLSLIHGRRYGLIGPNGCGKSTVMH 50 
                566778999999*********************86 PP

  == domain 2    score: 26.5 bits;  conditional E-value: 6.8e-09
  TIGR00958 618 lsgGqkqriAiARALvrkPrvLiLDeAtSALDaeveqllqesksaksrtvlliahr 673
                 sgG + ri +ARAL  kPr+L+LDe t  LD +    l+   ++ ++t++++ h 
  MMETSP1137-20121227|696_1 209 FSGGWRMRISLARALFVKPRLLLLDEPTNHLDLHAVIWLEGYLQKWKHTLVVVSHD 264
                79*******************************88888888666667777777774 PP

  == domain 3    score: 24.5 bits;  conditional E-value: 2.6e-08
  TIGR00958 482 qdVsFsYPsrpdkpvlkdLtftlepGevvalVGPsGsGKStvaallenlYqPtgGqv 538
                 +VsF Y ++    ++ d  f l+  + valVG +G GKSt   l+     Pt G+v
  MMETSP1137-20121227|696_1 400 DNVSFHYENQE--DLFTDVDFGLNMDSRVALVGANGTGKSTLLKLMLSELTPTRGEV 454
                68*****8875..689***************************************98 PP

  == domain 4    score: 29.8 bits;  conditional E-value: 6.5e-10
  TIGR00958 617 qlsgGqkqriAiARALvrkPrvLiLDeAtSALDaeveqllqesksaksrtvlliahrLstvek.adkilvlkkgsvve.lGthkq 699
                 lsgGqk r+      +r+  +L+LDe t  LD e+   l +  +a +  vl+i+h  s+++k +++i v++  +v++  G++++
  MMETSP1137-20121227|696_1 523 TLSGGQKSRVVFVELGLRRCHLLLLDEPTNHLDLETVDCLVKALHAFEGGVLVITHNVSLINKvCNQIWVIEDRKVNRfAGEFEE 607
                69********************************988888888888899************98679******9999873466665 PP

>> TIGR02982  heterocyst_DevA: ABC exporter ATP-binding subunit, DevA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   0.0     0.022       1.3      18      53 ..      19      54 ..      11      88 .. 0.88
   2 !   37.0   0.0   9.2e-12   5.6e-10     113     212 ..     179     276 ..     171     284 .. 0.77
   3 !   40.2   0.0     1e-12     6e-11       4     218 ..     399     597 ..     396     599 .. 0.74

  Alignments for each domain:
  == domain 1    score: 6.4 bits;  conditional E-value: 0.022
  TIGR02982 18 kqvlfdinleiepgeiviltGpsGsGkttlltligg 53
               k +++d +l++ +g    l Gp G+Gk t++  ig+
  MMETSP1137-20121227|696_1 19 KTLFHDAKLSLIHGRRYGLIGPNGCGKSTVMHAIGT 54
               667889999999999999*************99996 PP

  == domain 2    score: 37.0 bits;  conditional E-value: 9.2e-12
  TIGR02982 113 lsakeakakaeelleavg.leerldykpedlsgGqkqrvaiaralvarPklvladePtaaldkksgrevvellqklareqgttillvthdnril.dvadriv 212
                + a+ a+++a+++l+ +  lee+ +   + +sgG + r+++aral  +P+l+l dePt  ld ++   v+  l+   ++   t+++v hd   l  v+  i+
  MMETSP1137-20121227|696_1 179 IGADSAEQRASAILSGLQfLEEQKNWPTAAFSGGWRMRISLARALFVKPRLLLLDEPTNHLDLHA---VI-WLEGYLQKWKHTLVVVSHDRDFLtTVCTDIL 276
                466778899999999886367777777889********************************865...33.4444455556788999999876513555555 PP

  == domain 3    score: 40.2 bits;  conditional E-value: 1e-12
  TIGR02982   4 irelnhyygkgelrkqvlfdinleiepgeiviltGpsGsGkttlltligglrsvqeGelkvlgkelkgasekel.vqvrrkiGyifqahnllesltaeqnvrmalelkeklsakeakakaeelleavgleerldykp.edlsgGqkqrvaiaralvarPklvladePtaaldkksgrevvellqklareqgttillvthdnril.dvadrivkmedGk 218
                + +++ +y   e+++ ++ d+++ ++ +  v l G+ G+Gk tll l+ +  +   Ge++   +   g+ +++   q+    G+ +           + +v   +   +++  + ++++ ++ l + gle +++ ++ e lsgGqk rv +      r +l+l dePt  ld ++   +v+ l+         +l++th+  ++ +v+++i  +ed k
  MMETSP1137-20121227|696_1 399 VDNVSFHY---ENQEDLFTDVDFGLNMDSRVALVGANGTGKSTLLKLMLSELTPTRGEVRQSRSCKIGVYNQHScDQL--AAGMRLA----------KGEVLSPVSYLAHTFPSMSTQEIRNALGKFGLEGHHHLQAiETLSGGQKSRVVFVELGLRRCHLLLLDEPTNHLDLETVDCLVKALH----AFEGGVLVITHNVSLInKVCNQIWVIEDRK 597
                55555555...4567889999999999*********************999999999998665554444443330333..3455444..........44444455555555666677788999******99887654389********************************988666666554....44567999***9765516899998888866 PP

>> TIGR03410  urea_trans_UrtE: urea ABC transporter, ATP-binding protein UrtE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.6   0.0     0.001      0.06      11      46 ..      17      52 ..       8      64 .. 0.86
   2 ?    0.1   0.0       1.6        98     181     206 ..      66      91 ..      55     109 .. 0.78
   3 !   30.0   0.0   1.2e-09   7.1e-08     110     203 ..     187     276 ..     174     300 .. 0.76
   4 ?   -2.4   0.0       9.2   5.5e+02      25      39 ..     341     355 ..     337     357 .. 0.85
   5 !   43.3   0.0     1e-13   6.3e-12       1     211 [.     397     599 ..     397     617 .. 0.79

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 0.001
  TIGR03410 11 gesevlrdvslevekgevvavlGrngvGkttllkal 46
               g  ++++d +l++ +g+   ++G ng Gk+t+++a+
  MMETSP1137-20121227|696_1 17 GGKTLFHDAKLSLIHGRRYGLIGPNGCGKSTVMHAI 52
               6678899**************************998 PP

  == domain 2    score: 0.1 bits;  conditional E-value: 1.6
  TIGR03410 181 kdlaillveqvldfaleladrylvle 206
                 ++ illveq ++ + e++   +v++
  MMETSP1137-20121227|696_1  66 PGMDILLVEQEVQASDEITALQMVVS 91 
                4899********99999887777665 PP

  == domain 3    score: 30.0 bits;  conditional E-value: 1.2e-09
  TIGR03410 110 ipeeiyelFPvlkemlkRrgGdLsGGqqqqlaiaRaLvtePklllLDePteGiqPsiikeiekvikelakekdlaillveqvldfaleladryl 203
                    i++    l+e ++  +   sGG +  +++aRaL  +P+lllLDePt+ +    +  +e  +++ ++    ++++v +  df +++   +l
  MMETSP1137-20121227|696_1 187 RASAILSGLQFLEEQKNWPTAAFSGGWRMRISLARALFVKPRLLLLDEPTNHLDLHAVIWLEGYLQKWKH----TLVVVSHDRDFLTTVCTDIL 276
                555666677789999999999*****************************99888777777777666554....56666666677666666555 PP

  == domain 4    score: -2.4 bits;  conditional E-value: 9.2
  TIGR03410  25 kgevvavlGrngvGk 39 
                k++++ vlG+n+ Gk
  MMETSP1137-20121227|696_1 341 KKQMAQVLGKNSKGK 355
                678999********9 PP

  == domain 5    score: 43.3 bits;  conditional E-value: 1e-13
  TIGR03410   1 levenlevaYges.evlrdvslevekgevvavlGrngvGkttllkalvgllkvksGeielege...ditklkpeervkaGiayvpqGreifpkltveenlelglealkkkekkipeeiyelFPvlkemlkRrgGdLsGGqqqqlaiaRaLvtePklllLDePteGiqPsiikeiekvikelakekdlaillveqvldfaleladrylvlerGevv 211
                l v+n++ +Y++   +++dv++ ++ ++ va++G ng+Gk+tllk +++ l+ ++Ge++ + +    + ++++ ++ +aG+    +G  +++ ++    l  ++ +++   ++ + +++  F +  + +      LsGGq+  +      + + +lllLDePt+ +    ++ + k++++ +     ++l++ +++++  ++ ++++v+e  +v 
  MMETSP1137-20121227|696_1 397 LAVDNVSFHYENQeDLFTDVDFGLNMDSRVALVGANGTGKSTLLKLMLSELTPTRGEVRQSRSckiGVYNQHSCDQLAAGMRL-AKGE-VLSPVS---YLAHTFPSMS---TQEIRNALGKFGLEGHHHLQAIETLSGGQKSRVVFVELGLRRCHLLLLDEPTNHLDLETVDCLVKALHAFE----GGVLVITHNVSLINKVCNQIWVIEDRKVN 599
                6799******86515789****************************************8765422246677788889999874.5664.444333...3444444444...455566778898887777788899*******************************9888877777666654....4899*******************987775 PP

>> TIGR02204  MsbA_rel: ABC transporter, permease/ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.3   0.0    0.0055      0.33     356     385 ..      22      51 ..      14      54 .. 0.85
   2 !   21.4   0.0     3e-07   1.8e-05     476     512 ..     208     244 ..     199     279 .. 0.81
   3 !   31.8   0.0   2.2e-10   1.3e-08     338     398 ..     397     455 ..     370     467 .. 0.83
   4 !   26.9   0.0   6.6e-09     4e-07     476     552 ..     523     598 ..     512     613 .. 0.90

  Alignments for each domain:
  == domain 1    score: 7.3 bits;  conditional E-value: 0.0055
  TIGR02204 356 ldgldltvrpGetvalvGPsGaGkstllel 385
                +++ +l++  G++  l+GP G Gkst+++ 
  MMETSP1137-20121227|696_1  22 FHDAKLSLIHGRRYGLIGPNGCGKSTVMHA 51 
                5677889999*****************985 PP

  == domain 2    score: 21.4 bits;  conditional E-value: 3e-07
  TIGR02204 476 tLsGGqkqriaiarailkdapiLLLdeatsaLdaese 512
                 +sGG + ri++ara++ + ++LLLde t+ Ld ++ 
  MMETSP1137-20121227|696_1 208 AFSGGWRMRISLARALFVKPRLLLLDEPTNHLDLHAV 244
                68*******************************7654 PP

  == domain 3    score: 31.8 bits;  conditional E-value: 2.2e-10
  TIGR02204 338 iefeevkfayParpdqkaldgldltvrpGetvalvGPsGaGkstllelllrfydPqsGail 398
                +++++v+f+y ++ d   + ++d+ ++   +valvG  G Gkstll+l+l    P++G+++
  MMETSP1137-20121227|696_1 397 LAVDNVSFHYENQEDL--FTDVDFGLNMDSRVALVGANGTGKSTLLKLMLSELTPTRGEVR 455
                3579*******99975..689*************************************997 PP

  == domain 4    score: 26.9 bits;  conditional E-value: 6.6e-09
  TIGR02204 476 tLsGGqkqriaiarailkdapiLLLdeatsaLdaeseqlvqqaleelmkgrttlviahrLatvlk.adrivvldkGri 552
                tLsGGqk r+      l+   +LLLde t+ Ld e+ + + +al++       lvi h ++ + k +++i v+++ ++
  MMETSP1137-20121227|696_1 523 TLSGGQKSRVVFVELGLRRCHLLLLDEPTNHLDLETVDCLVKALHAFEG--GVLVITHNVSLINKvCNQIWVIEDRKV 598
                7*******************************************98755..58**********875799*9*998776 PP

>> TIGR03771  anch_rpt_ABC: anchored repeat-type ABC transporter, ATP-binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.6   0.0    0.0012     0.071       4      26 ..      30      52 ..      27      63 .. 0.86
   2 !   32.7   0.0   2.1e-10   1.3e-08     103     181 ..     198     273 ..     181     285 .. 0.84
   3 !   45.1   0.4   3.5e-14   2.1e-12       8     191 ..     425     598 ..     418     611 .. 0.82

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 0.0012
  TIGR03771  4 dkGellgllGpnGaGkttllrai 26
                +G   gl+GpnG Gk+t++ ai
  MMETSP1137-20121227|696_1 30 IHGRRYGLIGPNGCGKSTVMHAI 52
               5677889*************998 PP

  == domain 2    score: 32.7 bits;  conditional E-value: 2.1e-10
  TIGR03771 103 lteladrpvGelsGGqrqrvlvaralavkpslllldepftGldlpsqellvelfeelagegtailmtthdlaeavatcd 181
                l+e ++ p   +sGG r r+ +aral vkp+lllldep   ldl +   l + +++    ++++++++hd     ++c 
  MMETSP1137-20121227|696_1 198 LEEQKNWPTAAFSGGWRMRISLARALFVKPRLLLLDEPTNHLDLHAVIWLEGYLQK---WKHTLVVVSHDRDFLTTVCT 273
                56778889999*********************************999999887765...57889999998776666665 PP

  == domain 3    score: 45.1 bits;  conditional E-value: 3.5e-14
  TIGR03771   8 llgllGpnGaGkttllrailglikvakGsvkvagkssrkgrreiGyvpqrhefawdfpidv.eqtvlsGragliGllrrpkkadfaavadalervklt.eladrpvGelsGGqrqrvlvaralavkpslllldepftGldlpsqellvelfeelagegtailmtthdlaeavatcdrvvllngrvv 191
                 ++l+G nG+Gk+tll+ +l+ +++++G+v+ +        ++iG   q         + + ++ vls  + l   +   +    + +++al +  l+ +   +++  lsGGq+ rv+       + +lllldep   ldl + + lv+    l + +  +l+ th+++   ++c+++ +++ r v
  MMETSP1137-20121227|696_1 425 RVALVGANGTGKSTLLKLMLSELTPTRGEVRQSR------SCKIGVYNQHSCDQLAAGMRLaKGEVLSPVSYLAHTFPSMS---TQEIRNALGKFGLEgHHHLQAIETLSGGQKSRVVFVELGLRRCHLLLLDEPTNHLDLETVDCLVKA---LHAFEGGVLVITHNVSLINKVCNQIWVIEDRKV 598
                589******************9999*****9766......59999888876555555555414578888777776665544...456899******974666789************9998888899**************999998765...55567789****************998877655 PP

>> TIGR03411  urea_trans_UrtD: urea ABC transporter, ATP-binding protein UrtD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.0   8.7e-05    0.0052       9      52 ..      13      57 ..       7      88 .. 0.82
   2 !   24.7   0.0   5.6e-08   3.4e-06     118     211 ..     182     274 ..     165     291 .. 0.83
   3 !   21.1   0.0   7.1e-07   4.3e-05       2      80 ..     396     476 ..     395     486 .. 0.83
   4 !   28.2   0.0     5e-09     3e-07      96     220 ..     475     598 ..     460     610 .. 0.82

  Alignments for each domain:
  == domain 1    score: 14.3 bits;  conditional E-value: 8.7e-05
  TIGR03411  9 svsfdgfkalndlslsveegelrviiGpnGaGkttllDvi.tGkt 52
               s+s +g +  +d +ls+ +g    +iGpnG Gk+t++ +i tG +
  MMETSP1137-20121227|696_1 13 SISRGGKTLFHDAKLSLIHGRRYGLIGPNGCGKSTVMHAIgTGEV 57
               556666667788899999999999*************99856665 PP

  == domain 2    score: 24.7 bits;  conditional E-value: 5.6e-08
  TIGR03411 118 keekerieevleli.gLeekadkkaglLshGqkqwLeigmllvqepkllllDePvaGmtdeetektaellkelakersvvvvehDmefvrelaek 211
                +++++r +++l+ +  Lee++++ +++ s G + ++ ++  l  +p+llllDeP+  +  +        l++   ++++vvv hD +f+ ++ + 
  MMETSP1137-20121227|696_1 182 DSAEQRASAILSGLqFLEEQKNWPTAAFSGGWRMRISLARALFVKPRLLLLDEPTNHLDLHAVIWLEGYLQKW--KHTLVVVSHDRDFLTTVCTD 274
                556666677776551589999***********************************99999888888888864..79***********9988765 PP

  == domain 3    score: 21.1 bits;  conditional E-value: 7.1e-07
  TIGR03411   2 iLevedvsvsfdgfkal.ndlslsveegelrviiGpnGaGkttllDvitGktrpdeGsvlfkgk.dltklkeaeiarlGig 80 
                iL v++vs +++  + l +d+++ ++ ++  +++G+nG Gk+tll ++     p++G+v  + + ++  +++++  +l  g
  MMETSP1137-20121227|696_1 396 ILAVDNVSFHYENQEDLfTDVDFGLNMDSRVALVGANGTGKSTLLKLMLSELTPTRGEVRQSRScKIGVYNQHSCDQLAAG 476
                78999999999998765489***************************************9887767777666666665555 PP

  == domain 4    score: 28.2 bits;  conditional E-value: 5e-09
  TIGR03411  96 enlelalkadksvlallfarlskeekerieevleligLeekadkka.glLshGqkqwLeigmllvqepkllllDePvaGmtdeetektaellkelakersvvvvehDmefvrelaekvtvlheGkv 220
                  ++la  +  s ++ l++++ + ++++i+++l   gLe +++ +a  +Ls Gqk ++    l +++ +llllDeP+  +  e  +   + l++   e  v+v+ h+++ ++++ +++ v+++ kv
  MMETSP1137-20121227|696_1 475 AGMRLAKGEVLSPVSYLAHTFPSMSTQEIRNALGKFGLEGHHHLQAiETLSGGQKSRVVFVELGLRRCHLLLLDEPTNHLDLETVDCLVKALHAF--EGGVLVITHNVSLINKVCNQIWVIEDRKV 598
                4678888888899999*************************99998468********99999999***********9988766555555555544..557******************99988776 PP

>> TIGR00968  3a0106s01: sulfate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.3   0.0    0.0013      0.08      13      51 ..      19      57 ..      10      78 .. 0.81
   2 !   41.6   0.0   3.4e-13   2.1e-11     107     220 ..     184     294 ..     175     304 .. 0.83
   3 !   16.5   0.0   1.7e-05     0.001       3      57 ..     399     454 ..     397     469 .. 0.85
   4 !   17.5   0.0     8e-06   0.00049     129     214 ..     522     603 ..     491     617 .. 0.81

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 0.0013
  TIGR00968 13 fqalddvdlevktGslvallGpsGsGkstllrviaGlek 51
                + ++d +l++ +G+  +l+Gp G Gkst++ +i   e 
  MMETSP1137-20121227|696_1 19 KTLFHDAKLSLIHGRRYGLIGPNGCGKSTVMHAIGTGEV 57
               566788999999*******************99976555 PP

  == domain 2    score: 41.6 bits;  conditional E-value: 3.4e-13
  TIGR00968 107 ikakveellelvqleklgdryp.sqlsGGqrqrvalaralavepqvllldepfgaldakvrkelrawlrklhdevkvttvfvthdqeealevadrivvlekGkieqvgsaeevyd 220
                  ++ + +l+ +q+ + ++++p + +sGG r r++laral v+p++llldep   ld +       wl    ++ k t v+v+hd++  + v  +i    + k+       ev++
  MMETSP1137-20121227|696_1 184 AEQRASAILSGLQFLEEQKNWPtAAFSGGWRMRISLARALFVKPRLLLLDEPTNHLDLHAV----IWLEGYLQKWKHTLVVVSHDRDFLTTVCTDILHCWRSKLVHYAGNYEVFE 294
                56677788888888888888883579*******************************8765....57777777788899********9999999999888888877777777776 PP

  == domain 3    score: 16.5 bits;  conditional E-value: 1.7e-05
  TIGR00968   3 ianvskrfGdfq.alddvdlevktGslvallGpsGsGkstllrviaGlekpdsGri 57 
                ++nvs ++ + +  + dvd+ ++  s val+G  G+Gkstll+++     p+ G++
  MMETSP1137-20121227|696_1 399 VDNVSFHYENQEdLFTDVDFGLNMDSRVALVGANGTGKSTLLKLMLSELTPTRGEV 454
                78888888776515689**************************9987777888776 PP

  == domain 4    score: 17.5 bits;  conditional E-value: 8e-06
  TIGR00968 129 sqlsGGqrqrvalaralavepqvllldepfgaldakvrkelrawlrklhdevkvttvfvthdqeealevadrivvlekGkieqvgs 214
                + lsGGq+ rv +        ++llldep   ld +  + l + l       +   +++th+ +   +v ++i v+e+ k+++   
  MMETSP1137-20121227|696_1 522 ETLSGGQKSRVVFVELGLRRCHLLLLDEPTNHLDLETVDCLVKALHA----FEGGVLVITHNVSLINKVCNQIWVIEDRKVNRFAG 603
                679**********99888899*************9877766555544....445556789******************99987654 PP

>> TIGR03265  PhnT2: putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.0   0.0   0.00031     0.019      18      54 ..      20      56 ..      11      74 .. 0.85
   2 !   38.6   0.0   2.7e-12   1.6e-10     108     218 ..     181     288 ..     175     314 .. 0.81
   3 !   15.7   0.0   2.4e-05    0.0014       3      64 ..     395     457 ..     393     464 .. 0.87
   4 !   18.5   0.0   3.3e-06    0.0002     113     225 ..     501     610 ..     494     683 .. 0.80

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 0.00031
  TIGR03265 18 talkdislsvkkgelvclLGPsGCGkttLLriiaGLe 54
               t ++d +ls+ +g    l+GP GCGk+t++ +i   e
  MMETSP1137-20121227|696_1 20 TLFHDAKLSLIHGRRYGLIGPNGCGKSTVMHAIGTGE 56
               567899999999******************9997655 PP

  == domain 2    score: 38.6 bits;  conditional E-value: 2.7e-12
  TIGR03265 108 reevaerveelLelvglsgseekyP.gqlsGGqqqrvaLaralalsPglLLLDePlsaLDakvrekLreelkklqrklgvttimvthdqeealslaDrivvmnkgkieqvgt 218
                 + +++r + +L+ +++ + ++ +P + +sGG + r++Laral ++P lLLLDeP   LD +    L   l+k     + t ++v hd++   +++  i    ++k+  ++ 
  MMETSP1137-20121227|696_1 181 ADSAEQRASAILSGLQFLEEQKNWPtAAFSGGWRMRISLARALFVKPRLLLLDEPTNHLDLHAVIWLEGYLQKW----KHTLVVVSHDRDFLTTVCTDILHCWRSKLVHYAG 288
                5778999*********9999999*94479*******************************99888887776655....5566789999887766666666555555555555 PP

  == domain 3    score: 15.7 bits;  conditional E-value: 2.4e-05
  TIGR03265   3 eylsieeiekefeaft.alkdislsvkkgelvclLGPsGCGkttLLriiaGLekqdaGaillg 64 
                + l++++++ ++e+ +  ++d+++ ++ +  v+l+G  G Gk+tLL+++    ++++G++ ++
  MMETSP1137-20121227|696_1 395 PILAVDNVSFHYENQEdLFTDVDFGLNMDSRVALVGANGTGKSTLLKLMLSELTPTRGEVRQS 457
                67999****99997651569***************************9988888999998875 PP

  == domain 4    score: 18.5 bits;  conditional E-value: 3.3e-06
  TIGR03265 113 erveelLelvglsgsee.kyPgqlsGGqqqrvaLaralalsPglLLLDePlsaLDakvrekLreelkklqrklgvttimvthdqeealslaDrivvmnkgkieqvgtPeeiYeq 225
                + ++++L   gl+g ++ +    lsGGq+ rv +      + +lLLLDeP   LD    + L + l+++   +    +++th+      ++++i v+++ k+++ +   e Y++
  MMETSP1137-20121227|696_1 501 QEIRNALGKFGLEGHHHlQAIETLSGGQKSRVVFVELGLRRCHLLLLDEPTNHLDLETVDCLVKALHAFEGGV----LVITHNVSLINKVCNQIWVIEDRKVNRFAGEFEEYRD 610
                66777777788887766234578************99999**********************99999887654....6688999888899999999999999888877777765 PP

>> TIGR02324  CP_lyasePhnL: phosphonate C-P lyase system protein PhnL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.0   0.0    0.0016     0.094      24      54 ..      22      52 ..      13      59 .. 0.90
   2 !   38.8   0.0   2.3e-12   1.4e-10     122     219 ..     181     275 ..     171     279 .. 0.82
   3 !   27.1   0.0   9.2e-09   5.5e-07      21     215 ..     410     586 ..     400     594 .. 0.71

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 0.0016
  TIGR02324 24 lkevsleveaGelvalsGksGaGkstllksl 54
               +++ +l++  G    l+G+ G Gkst+++++
  MMETSP1137-20121227|696_1 22 FHDAKLSLIHGRRYGLIGPNGCGKSTVMHAI 52
               6788999*********************987 PP

  == domain 2    score: 38.8 bits;  conditional E-value: 2.3e-12
  TIGR02324 122 reearakakellarlniperLWslaPatfsGGekqRvniaraliadrPi.LLLdePtasLdaanrkvvvelikeakargaaligifhdeevrelvadre 219
                 ++a+++a+++l+ l+  e   + + a fsGG + R+ +aral + +P+ LLLdePt  Ld     +v+ l   +++   +l+ + hd++  ++v++  
  MMETSP1137-20121227|696_1 181 ADSAEQRASAILSGLQFLEEQKNWPTAAFSGGWRMRISLARALFV-KPRlLLLDEPTNHLDLH---AVIWLEGYLQKWKHTLVVVSHDRDFLTTVCTDI 275
                57899************9999999999******************.66516789******754...566666666777778999999998877777665 PP

  == domain 3    score: 27.1 bits;  conditional E-value: 9.2e-09
  TIGR02324  21 lpvlkevsleveaGelvalsGksGaGkstllkslyanYlpesgrilvrhegeivdlvkaserevlevRrktigyvsqfLrviPRvsalevvaepllelGvereearakakellarlniperLWslaPatfsGGekqRvniaraliadrPiLLLdePtasLdaanrkvvvelikeakargaaligifhdeevrelv 215
                 + +++v++ ++    val G+ G+Gkstllk + ++  p  g+++   + +i    + s  ++                +  R++  ev+        +    ++++ +++l ++ +  +    a  t sGG k Rv      +    +LLLdePt  Ld  + +    l+k ++a    ++ i h+ ++ ++v
  MMETSP1137-20121227|696_1 410 EDLFTDVDFGLNMDSRVALVGANGTGKSTLLKLMLSELTPTRGEVRQSRSCKIGVYNQHSCDQLA---------------AGMRLAKGEVLSPVSYLAHTFPSMSTQEIRNALGKFGLEGHHHLQAIETLSGGQKSRVVFVELGLRRCHLLLLDEPTNHLDLETVD---CLVKALHAFEGGVLVITHNVSLINKV 586
                467899**************************************998887776633333333332...............233555555555444444444555666677777777776666666678*********998887777799***********877665...55555566555666677765555544 PP

>> TIGR01288  nodI: nodulation ABC transporter NodI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.0     4e-06   0.00024      11      49 ..      13      51 ..       6      64 .. 0.90
   2 !   31.9   0.0   2.4e-10   1.4e-08     120     175 ..     195     246 ..     170     276 .. 0.82
   3 !   36.1   0.2   1.2e-11   7.5e-10      19     210 ..     412     595 ..     394     604 .. 0.76

  Alignments for each domain:
  == domain 1    score: 18.0 bits;  conditional E-value: 4e-06
  TIGR01288 11 sksygdkvvvndlsftiaagecfgllgpngagkstiarl 49
               s s g+k + +d  +++ +g  +gl+gpng+gkst+   
  MMETSP1137-20121227|696_1 13 SISRGGKTLFHDAKLSLIHGRRYGLIGPNGCGKSTVMHA 51
               56889******************************9865 PP

  == domain 2    score: 31.9 bits;  conditional E-value: 2.4e-10
  TIGR01288 120 lefarleskadvrvadlsggmkrrltlaralindpqllildepttgldpharhliw 175
                l    le + + + a +sgg + r++laral   p+ll+ldept  ld ha  +iw
  MMETSP1137-20121227|696_1 195 L--QFLEEQKNWPTAAFSGGWRMRISLARALFVKPRLLLLDEPTNHLDLHA--VIW 246
                3..4489999****************************************9..456 PP

  == domain 3    score: 36.1 bits;  conditional E-value: 1.2e-11
  TIGR01288  19 vvndlsftiaagecfgllgpngagkstiarlvlglispdegkitvlgepvpararlarakigvvpqf..dnldreft.vrenllvfgryf.....glstreieevipsllefarleskadv.rvadlsggmkrrltlaralindpqllildepttgldpharhliwerlrsllargktilltthlmeeaerlcdrlcvlea 210
                +  d+ f +       l+g ng+gkst+ +l+l   +p +g++         ++r   +kigv +q   d+l   +  ++ ++l    y+     ++st+ei +++    +f  le + +   + +lsgg k r+ +    +   +ll+ldept  ld  +   +   +++l a    +l+ th +   +++c+++ v+e 
  MMETSP1137-20121227|696_1 412 LFTDVDFGLNMDSRVALVGANGTGKSTLLKLMLSELTPTRGEVR--------QSR--SCKIGVYNQHscDQLAAGMRlAKGEVLSPVSYLahtfpSMSTQEIRNAL---GKF-GLEGHHHLqAIETLSGGQKSRVVFVELGLRRCHLLLLDEPTNHLDLETVDCL---VKALHAFEGGVLVITHNVSLINKVCNQIWVIED 595
                567899999999999*************************9863........233..2578888875336776665414455665555541111256666666554...455.4777666515889********************************9987766...5778888899*********************96 PP

>> TIGR01978  sufC: FeS assembly ATPase SufC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.0   8.6e-05    0.0052      11      54 ..      17      60 ..       8      84 .. 0.83
   2 !   28.1   0.0   4.6e-09   2.8e-07     143     235 ..     207     296 ..     184     304 .. 0.89
   3 !   15.8   0.0   2.5e-05    0.0015       2      49 ..     398     446 ..     397     477 .. 0.81
   4 !   21.4   0.0     5e-07     3e-05     143     223 ..     522     598 ..     500     616 .. 0.85

  Alignments for each domain:
  == domain 1    score: 14.1 bits;  conditional E-value: 8.6e-05
  TIGR01978 11 edkeiLkglnlevkkGevhaimGpnGsGkstLskvlaghekyev 54
                 k++ ++ +l++ +G  + ++GpnG Gkst+++++   e  e+
  MMETSP1137-20121227|696_1 17 GGKTLFHDAKLSLIHGRRYGLIGPNGCGKSTVMHAIGTGEVEEI 60
               568888999999**********************9976655555 PP

  == domain 2    score: 28.1 bits;  conditional E-value: 4.6e-09
  TIGR01978 143 eGfsGGekkrneilqlallePklaiLDeiDsGlDvDalkivaegvnklreeekalliithyerllelikPdvvhvlldGrivksGdvelakel 235
                  fsGG + r  + + ++++P+l +LDe    lD+ a+  +   ++k++   ++l++++h + +l ++  d +h   +  +   G+ e+ +++
  MMETSP1137-20121227|696_1 207 AAFSGGWRMRISLARALFVKPRLLLLDEPTNHLDLHAVIWLEGYLQKWK---HTLVVVSHDRDFLTTVCTDILHCWRSKLVHYAGNYEVFEKV 296
                57************************************99999999997...579*******************9988888888988888776 PP

  == domain 3    score: 15.8 bits;  conditional E-value: 2.5e-05
  TIGR01978   2 kikdlhvsvedk.eiLkglnlevkkGevhaimGpnGsGkstLskvlagh 49 
                 + +++ + e++ ++ ++++  ++    +a++G+nG+GkstL k +  +
  MMETSP1137-20121227|696_1 398 AVDNVSFHYENQeDLFTDVDFGLNMDSRVALVGANGTGKSTLLKLMLSE 446
                567777777765157899*************************988654 PP

  == domain 4    score: 21.4 bits;  conditional E-value: 5e-07
  TIGR01978 143 eGfsGGekkrneilqlallePklaiLDeiDsGlDvDalkivaegvnklreeekalliithyerllelikPdvvhvlldGri 223
                e  sGG k r   + l l + +l +LDe    lD++++ ++++ ++ +   e ++l+ith+  l++++  +++ v+ d ++
  MMETSP1137-20121227|696_1 522 ETLSGGQKSRVVFVELGLRRCHLLLLDEPTNHLDLETVDCLVKALHAF---EGGVLVITHNVSLINKVC-NQIWVIEDRKV 598
                568*******************************99988887766655...789************985.67788877776 PP

>> TIGR01277  thiQ: thiamine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.9   0.0    0.0075      0.45      12      44 ..      20      52 ..      13      64 .. 0.84
   2 !   21.0   0.0   7.4e-07   4.5e-05     128     200 ..     208     276 ..     187     286 .. 0.85
   3 !   23.2   0.0   1.6e-07   9.6e-06       2      56 ..     398     455 ..     397     466 .. 0.83
   4 !   27.2   0.0   9.6e-09   5.8e-07     125     209 ..     520     600 ..     494     603 .. 0.79

  Alignments for each domain:
  == domain 1    score: 7.9 bits;  conditional E-value: 0.0075
  TIGR01277 12 hlplefdlsveaGervailGesGaGkstllnli 44
               +l+   +ls+ +G r  ++G+ G Gkst++  i
  MMETSP1137-20121227|696_1 20 TLFHDAKLSLIHGRRYGLIGPNGCGKSTVMHAI 52
               56666789999*****************99877 PP

  == domain 2    score: 21.0 bits;  conditional E-value: 7.4e-07
  TIGR01277 128 elsGGqrqrvalarclvrekpillldepfsaldpklreemlalvkkladekkltlllvthslsdaaaiasqvv 200
                 +sGG r r++lar l  +  +llldep   ld +     +  ++   ++ k tl++v+h+ + ++++ + ++
  MMETSP1137-20121227|696_1 208 AFSGGWRMRISLARALFVKPRLLLLDEPTNHLDLH----AVIWLEGYLQKWKHTLVVVSHDRDFLTTVCTDIL 276
                58**************99999*********99964....4556678889999********9988887777665 PP

  == domain 3    score: 23.2 bits;  conditional E-value: 1.6e-07
  TIGR01277   2 klddviyeykh...lplefdlsveaGervailGesGaGkstllnliaGflepasGeik 56 
                ++d+v ++y++   l+   d+ ++   rva++G  G+Gkstll+l+   l+p++Ge++
  MMETSP1137-20121227|696_1 398 AVDNVSFHYENqedLFTDVDFGLNMDSRVALVGANGTGKSTLLKLMLSELTPTRGEVR 455
                67888887765111455678889999*****************************986 PP

  == domain 4    score: 27.2 bits;  conditional E-value: 9.6e-09
  TIGR01277 125 lpeelsGGqrqrvalarclvrekpillldepfsaldpklreemlalvkkladekkltlllvthslsdaaaiasqvvvvedGkikv 209
                  e lsGGq+ rv +    +r   +llldep   ld      + +lvk l +  +  +l++th++s + ++ +q+ v+ed k++ 
  MMETSP1137-20121227|696_1 520 AIETLSGGQKSRVVFVELGLRRCHLLLLDEPTNHLDLE---TVDCLVKAL-HAFEGGVLVITHNVSLINKVCNQIWVIEDRKVNR 600
                4589*****************************99964...344566655.56678999*********************99975 PP

>> TIGR03522  GldA_ABC_ATP: gliding motility-associated ABC transporter ATP-binding subunit GldA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.1   0.0   0.00018     0.011      26      49 ..      30      53 ..      14      80 .. 0.80
   2 !   25.2   0.0   3.6e-08   2.2e-06     124     212 ..     198     285 ..     174     332 .. 0.74
   3 !   39.6   0.0   1.5e-12   9.2e-11       4     210 ..     398     598 ..     394     628 .. 0.81

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 0.00018
  TIGR03522 26 ekGeivGflGPnGaGkstlmkilt 49
                +G+  G++GPnG Gkst+m  + 
  MMETSP1137-20121227|696_1 30 IHGRRYGLIGPNGCGKSTVMHAIG 53
               579999**************9774 PP

  == domain 2    score: 25.2 bits;  conditional E-value: 3.6e-08
  TIGR03522 124 kaeqhk.kigalskGyrqrvGlakallhdPkvlildePttGldPnqlveirevikeiakdktvilsthimqevealcdrviiinkGkiva 212
                 +eq     +a+s G+r r+ la+al  +P++l+ldePt  ld   ++ +   +++   + t+++ +h    + ++c +++   + k+v 
  MMETSP1137-20121227|696_1 198 LEEQKNwPTAAFSGGWRMRISLARALFVKPRLLLLDEPTNHLDLHAVIWLEGYLQKW--KHTLVVVSHDRDFLTTVCTDILHCWRSKLVH 285
                334433146789*******************************99999888877764..4577778888888888888888777777765 PP

  == domain 3    score: 39.6 bits;  conditional E-value: 1.5e-12
  TIGR03522   4 evsdlsklygkqkal.devsfeaekGeivGflGPnGaGkstlmkiltgylkadsGsvavagedvlknslevrkniGylPehnPlyldlyvreylefsaalyklkgrklkkrveelielvGlkaeqh.kkigalskGyrqrvGlakallhdPkvlildePttGldPnqlveirevikei.akdktvilsthimqevealcdrviiinkGki 210
                 v ++s +y +q+ l  +v f  +  + v ++G nG+Gkstl+k++ + l+++ G v   ++   k  +  +++   l     l +     e l   + l      +  +++++ + + Gl+  +h + i+ ls G + rv + +  l   ++l+ldePt  ld +    +  ++k + a +  v++ th +  ++ +c+++ +i+  k+
  MMETSP1137-20121227|696_1 398 AVDNVSFHYENQEDLfTDVDFGLNMDSRVALVGANGTGKSTLLKLMLSELTPTRGEVR--QSRSCKIGVYNQHSCDQLAAGMRLAKG----EVLSPVSYLAHTFPSMSTQEIRNALGKFGLEGHHHlQAIETLSGGQKSRVVFVELGLRRCHLLLLDEPTNHLDLET---VDCLVKALhAFEGGVLVITHNVSLINKVCNQIWVIEDRKV 598
                688999999988754389*************************************865..455566666667777777666555544....4454444444444455699************99984679**********************************765...45566666356889********************998776 PP

>> TIGR01846  type_I_sec_HlyB: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.3   0.0    0.0022      0.13     471     503 ..      20      52 ..      10      81 .. 0.84
   2 !   29.1   0.0   1.1e-09   6.7e-08     592     670 ..     207     284 ..     187     313 .. 0.75
   3 !   17.2   0.0   4.4e-06   0.00027     457     514 ..     398     454 ..     384     458 .. 0.90
   4 !   23.3   0.0   6.3e-08   3.8e-06     593     676 ..     523     606 ..     516     620 .. 0.87

  Alignments for each domain:
  == domain 1    score: 8.3 bits;  conditional E-value: 0.0022
  TIGR01846 471 evlsnlsldikaGeviGivGpsGsGkstltkll 503
                +++++ +l++ +G+  G++Gp G+Gkst+ + +
  MMETSP1137-20121227|696_1  20 TLFHDAKLSLIHGRRYGLIGPNGCGKSTVMHAI 52 
                567888999*******************98765 PP

  == domain 2    score: 29.1 bits;  conditional E-value: 1.1e-09
  TIGR01846 592 aalsGGqrqrialaralvanPrilildeatsaldyeseavimrnlreickgrtviiiahrlstv.raadrilvlekGkiv 670
                aa+sGG r ri+laral ++Pr+l+lde t  ld ++   +   l++     t+++++h  + +   +  il   + k+v
  MMETSP1137-20121227|696_1 207 AAFSGGWRMRISLARALFVKPRLLLLDEPTNHLDLHAVIWLEGYLQKW--KHTLVVVSHDRDFLtTVCTDILHCWRSKLV 284
                789*******************************99888888888775..467777877544441346666666555555 PP

  == domain 3    score: 17.2 bits;  conditional E-value: 4.4e-06
  TIGR01846 457 efenirfrykedspevlsnlsldikaGeviGivGpsGsGkstltkllqrlyvPekGrv 514
                 ++n+ f y++ + ++++++ + ++    + +vG  G+Gkstl kl+    +P +G+v
  MMETSP1137-20121227|696_1 398 AVDNVSFHYEN-QEDLFTDVDFGLNMDSRVALVGANGTGKSTLLKLMLSELTPTRGEV 454
                5789*****75.67899**************************************998 PP

  == domain 4    score: 23.3 bits;  conditional E-value: 6.3e-08
  TIGR01846 593 alsGGqrqrialaralvanPrilildeatsaldyeseavimrnlreickgrtviiiahrlstv.raadrilvlekGkive.sGkhe 676
                +lsGGq+ r+      +   ++l+lde t  ld e+ + + + l++   g  v++i+h +s + + +++i v+e+ k+    G++e
  MMETSP1137-20121227|696_1 523 TLSGGQKSRVVFVELGLRRCHLLLLDEPTNHLDLETVDCLVKALHAFEGG--VLVITHNVSLInKVCNQIWVIEDRKVNRfAGEFE 606
                69*******************************************98765..8999*****99456*********99864245555 PP

>> TIGR03269  met_CoM_red_A2: methyl coenzyme M reductase system, component A2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.0     0.025       1.5      12      46 ..      18      52 ..       7      64 .. 0.62
   2 !   34.5   0.0   2.9e-11   1.7e-09     425     520 ..     206     297 ..     176     307 .. 0.81
   3 !   11.1   0.0   0.00036     0.022     276     342 ..     393     455 ..     370     463 .. 0.78
   4 !   24.9   0.0   2.4e-08   1.4e-06     165     263 ..     520     615 ..     503     631 .. 0.71

  Alignments for each domain:
  == domain 1    score: 5.0 bits;  conditional E-value: 0.025
  TIGR03269 12 glevlknisleleeGevlGilGksGaGksvllhll 46
               g++ +++ +l l  G+  G++G  G+Gks ++h +
  MMETSP1137-20121227|696_1 18 GKTLFHDAKLSLIHGRRYGLIGPNGCGKSTVMHAI 52
               44445556666666666666666666666666654 PP

  == domain 2    score: 34.5 bits;  conditional E-value: 2.9e-11
  TIGR03269 425 pdelseGerhrvalaqvlikeprivildeptGtmdpitkvkvaesilkareeleetfvivshdmdfvlevcdraalmrdGkivkiGdpeeiveelt 520
                +  +s G r r++la+ l  +pr+++ldept  +d  +   ++  + k     ++t v+vshd df+++vc  +      k+v+     e+ e++ 
  MMETSP1137-20121227|696_1 206 TAAFSGGWRMRISLARALFVKPRLLLLDEPTNHLDLHAVIWLEGYLQK----WKHTLVVVSHDRDFLTTVCTDILHCWRSKLVHYAGNYEVFEKVF 297
                56789******************************8776666655544....6789***************9998888899999888888877765 PP

  == domain 3    score: 11.1 bits;  conditional E-value: 0.00036
  TIGR03269 276 gediikvkdvskryisvdrGvvkavdnvslevkekeifGlvGtsGaGkttlskilaGvleptsGeve 342
                  +i+ v +vs +y   +  +     +v++ ++      lvG  G+Gk+tl k+++  l pt+Gev 
  MMETSP1137-20121227|696_1 393 AMPILAVDNVSFHYENQED-LF---TDVDFGLNMDSRVALVGANGTGKSTLLKLMLSELTPTRGEVR 455
                5567777777777766553.33...356677777777889999999999999999999999999985 PP

  == domain 4    score: 24.9 bits;  conditional E-value: 2.4e-08
  TIGR03269 165 iardlsGGekqrvvlarqlakeplllladeptGtldpktaklvhealkeavkeedislvltshwpeviedlsdkaillekGeive.eGepeevvakfles 263
                    lsGG+k rvv++    ++  lll dept  ld +t + + +al++     +  +++ +h   +i++++++  ++e+ ++ +  Ge ee  +   e+
  MMETSP1137-20121227|696_1 520 AIETLSGGQKSRVVFVELGLRRCHLLLLDEPTNHLDLETVDCLVKALHAF----EGGVLVITHNVSLINKVCNQIWVIEDRKVNRfAGEFEEYRDMLAEQ 615
                44578999999999988888888888889999999999988777776543....3344445588888888888888888888866246666655555555 PP

>> TIGR02142  modC_ABC: molybdate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   0.0     0.049       2.9      15      44 ..      24      53 ..       8      62 .. 0.76
   2 !   33.1   0.0   1.2e-10   7.4e-09     128     196 ..     205     269 ..     181     306 .. 0.80
   3 !   12.8   0.0   0.00018     0.011      11      54 ..     411     454 ..     402     462 .. 0.86
   4 !   25.2   0.0   3.1e-08   1.9e-06     128     217 ..     520     606 ..     505     636 .. 0.84

  Alignments for each domain:
  == domain 1    score: 4.8 bits;  conditional E-value: 0.049
  TIGR02142 15 dvdlelpgkgvtalFGrsGsGktslirlia 44
               d++l+l    + +l G  G+Gk++++++i 
  MMETSP1137-20121227|696_1 24 DAKLSLIHGRRYGLIGPNGCGKSTVMHAIG 53
               4555554447889**************984 PP

  == domain 2    score: 33.1 bits;  conditional E-value: 1.2e-10
  TIGR02142 128 lpgkLsGGekqRvaigRAlLssPeLLlmDePLaaLDekrkkeilPyLerlsaelkiPilyvsHsldeva 196
                 ++  sGG + R++++RAl  +P+LLl+DeP   LD +    +  yL++     k  ++ vsH+ d ++
  MMETSP1137-20121227|696_1 205 PTAAFSGGWRMRISLARALFVKPRLLLLDEPTNHLDLHAVIWLEGYLQKW----KHTLVVVSHDRDFLT 269
                57889*******************************98766555666555....555677888876555 PP

  == domain 3    score: 12.8 bits;  conditional E-value: 0.00018
  TIGR02142  11 dfeLdvdlelpgkgvtalFGrsGsGktslirliaGLtrpdegei 54 
                d   dvd+ l+ + ++al G+ G+Gk++l++l+   ++p++ge+
  MMETSP1137-20121227|696_1 411 DLFTDVDFGLNMDSRVALVGANGTGKSTLLKLMLSELTPTRGEV 454
                5667999999999*******************998888998887 PP

  == domain 4    score: 25.2 bits;  conditional E-value: 3.1e-08
  TIGR02142 128 lpgkLsGGekqRvaigRAlLssPeLLlmDePLaaLDekrkkeilPyLerlsaelkiPilyvsHsldevarladrvvvledGrvkaa.gkle 217
                  ++LsGG k Rv      L + +LLl+DeP   LD +  + ++       + ++  +l + H+++ ++++ +++ v+ed +v+ + g+ e
  MMETSP1137-20121227|696_1 520 AIETLSGGQKSRVVFVELGLRRCHLLLLDEPTNHLDLETVDCLVKA----LHAFEGGVLVITHNVSLINKVCNQIWVIEDRKVNRFaGEFE 606
                5689********************************9877665544....44678899*************************86414444 PP

>> TIGR03005  ectoine_ehuA: ectoine/hydroxyectoine ABC transporter, ATP-binding protein EhuA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.3   0.0     0.002      0.12      15      49 ..      21      55 ..      14      80 .. 0.87
   2 !   36.9   0.0     8e-12   4.8e-10     121     237 ..     182     295 ..     175     311 .. 0.84
   3 !    9.4   0.0    0.0019      0.12       4      48 ..     400     445 ..     397     466 .. 0.79
   4 !   17.7   0.0   5.7e-06   0.00034     146     221 ..     523     594 ..     500     607 .. 0.81

  Alignments for each domain:
  == domain 1    score: 9.3 bits;  conditional E-value: 0.002
  TIGR03005 15 vldglelevaaGekvaliGpsGsGkstilrilmtl 49
               ++++++l++ +G++  liGp G Gkst++  + t 
  MMETSP1137-20121227|696_1 21 LFHDAKLSLIHGRRYGLIGPNGCGKSTVMHAIGTG 55
               5677889999******************9988774 PP

  == domain 2    score: 36.9 bits;  conditional E-value: 8e-12
  TIGR03005 121 aeaekravelldmvGladkadalp.aqlsGGqkqrvaiaralalrpkvllfdevtsaldpelveevlnvlrrlasetdltmllvthemgfarefadrvlffdkGkiveeGkpdeifrk 237
                  ae+ra  +l  + + + ++++p a +sGG + r+++aral ++p++ll+de+t  ld + v  +        ++ + t+++v+h+  f   ++  +l   + k+v      e+f+k
  MMETSP1137-20121227|696_1 182 DSAEQRASAILSGLQFLEEQKNWPtAAFSGGWRMRISLARALFVKPRLLLLDEPTNHLDLHAVIWLE----GYLQKWKHTLVVVSHDRDFLTTVCTDILHCWRSKLVHYAGNYEVFEK 295
                5799*******99999999999994579*******************************87665444....444567789*************************9998888888876 PP

  == domain 3    score: 9.4 bits;  conditional E-value: 0.0019
  TIGR03005   4 sdvtkrfgelt.vldglelevaaGekvaliGpsGsGkstilrilmt 48 
                ++v+ ++++   ++ ++++ ++   +val+G  G+Gkst+l+++++
  MMETSP1137-20121227|696_1 400 DNVSFHYENQEdLFTDVDFGLNMDSRVALVGANGTGKSTLLKLMLS 445
                5666677766415578889999999*****************8875 PP

  == domain 4    score: 17.7 bits;  conditional E-value: 5.7e-06
  TIGR03005 146 qlsGGqkqrvaiaralalrpkvllfdevtsaldpelveevlnvlrrlasetdltmllvthemgfarefadrvlffd 221
                 lsGGqk rv        r ++ll+de+t  ld e v+ +++ l+      +  +l++th++ + +++++++   +
  MMETSP1137-20121227|696_1 523 TLSGGQKSRVVFVELGLRRCHLLLLDEPTNHLDLETVDCLVKALH----AFEGGVLVITHNVSLINKVCNQIWVIE 594
                69********99876667899************999887666554....456678999**9999999988876665 PP

>> TIGR01193  bacteriocin_ABC: ABC-type bacteriocin transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.0      0.36        22     486     517 ..      18      49 ..       5      54 .. 0.87
   2 !   19.3   0.0   1.2e-06     7e-05     610     667 ..     207     263 ..     197     294 .. 0.80
   3 !   29.1   0.0   1.3e-09   7.6e-08     474     532 ..     397     455 ..     382     477 .. 0.91
   4 !   22.3   0.0   1.5e-07   9.1e-06     587     687 ..     500     599 ..     488     615 .. 0.84

  Alignments for each domain:
  == domain 1    score: 1.2 bits;  conditional E-value: 0.36
  TIGR01193 486 gsevledislkikknekitlvGlsGsGkstla 517
                g+ +++d +l++ + ++  l+G  G Gkst++
  MMETSP1137-20121227|696_1  18 GKTLFHDAKLSLIHGRRYGLIGPNGCGKSTVM 49 
                567889************************86 PP

  == domain 2    score: 19.3 bits;  conditional E-value: 1.2e-06
  TIGR01193 610 ssisgGqkqrlalarallsdskvlildestsnldlltekkivenllklkdktiifvah 667
                ++ sgG + r++laral+++ ++l+lde t +ldl      +e  l+  + t++ v+h
  MMETSP1137-20121227|696_1 207 AAFSGGWRMRISLARALFVKPRLLLLDEPTNHLDLHAV-IWLEGYLQKWKHTLVVVSH 263
                578*******************************8554.3456666666778888877 PP

  == domain 3    score: 29.1 bits;  conditional E-value: 1.3e-09
  TIGR01193 474 ievndvsysyGygsevledislkikknekitlvGlsGsGkstlakllvkffqaesGeil 532
                + v++vs++y   ++++ d+++ ++++++++lvG  G+Gkstl kl++    ++ Ge+ 
  MMETSP1137-20121227|696_1 397 LAVDNVSFHYENQEDLFTDVDFGLNMDSRVALVGANGTGKSTLLKLMLSELTPTRGEVR 455
                6799*********************************************9999999986 PP

  == domain 4    score: 22.3 bits;  conditional E-value: 1.5e-07
  TIGR01193 587 iaeikddieklplGyqtelseeassisgGqkqrlalarallsdskvlildestsnldlltekkivenllklkdktiifvahrlsv.akksdkiivldeGkii 687
                  ei++ + k+ l  + +l     ++sgGqk r+ +    l  +++l+lde t +ldl t   +v+ l  + +  ++ ++h +s+  k  ++i v+++ k+ 
  MMETSP1137-20121227|696_1 500 TQEIRNALGKFGLEGHHHLQ-AIETLSGGQKSRVVFVELGLRRCHLLLLDEPTNHLDLETVDCLVKALHAF-EGGVLVITHNVSLiNKVCNQIWVIEDRKVN 599
                56888888888877777776.6789******************************************9999.888999****99615557889999988874 PP

>> TIGR02770  nickel_nikD: nickel import ATP-binding protein NikD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.3   0.0    0.0024      0.15       2      32 ..      22      52 ..      21      96 .. 0.84
   2 !   23.1   0.0   1.5e-07   8.8e-06     125     215 ..     208     294 ..     179     306 .. 0.85
   3 !   38.9   0.1   2.2e-12   1.3e-10       2     204 ..     413     598 ..     412     607 .. 0.75

  Alignments for each domain:
  == domain 1    score: 9.3 bits;  conditional E-value: 0.0024
  TIGR02770  2 vqdvnlslkrgkvlalvGesGsGksltalai 32
                +d +lsl +g+  +l+G  G+Gks++  ai
  MMETSP1137-20121227|696_1 22 FHDAKLSLIHGRRYGLIGPNGCGKSTVMHAI 52
               588999*******************999887 PP

  == domain 2    score: 23.1 bits;  conditional E-value: 1.5e-07
  TIGR02770 125 elsGGmlqRvmialallleaplliaDePttdlDvvvqaevLklleelrekrglgillithDlgvvaeladevavmekGkivergtvkelfq 215
                 +sGG   R+ +a al +++ ll+ DePt  lD+ + +     le   +k   ++++++hD   ++ +  +++   + k+v  +   e+f+
  MMETSP1137-20121227|696_1 208 AFSGGWRMRISLARALFVKPRLLLLDEPTNHLDLHAVI----WLEGYLQKWKHTLVVVSHDRDFLTTVCTDILHCWRSKLVHYAGNYEVFE 294
                58*******************************98765....4666677778899********9999999998888888887777666665 PP

  == domain 3    score: 38.9 bits;  conditional E-value: 2.2e-12
  TIGR02770   2 vqdvnlslkrgkvlalvGesGsGksltalailglldkeltktsGeilldgkelaalalrgreialilqnPrsafnPllti.keqlletlkalekls.kqakelivealeavgLeeaeevlkkypfelsGGmlqRvmialallleaplliaDePttdlDvvvqaevLklleelrekrglgillithDlgvvaeladevavmekGki 204
                 +dv++ l+++  +alvG+ G+Gks+    +l+l+ +elt t+Ge++ +         r+ +i++  q   + +   + + k ++l  +  l ++  + +++ i +al + gLe   + l+     lsGG   Rv+     l +  ll+ DePt  lD+ +   ++k      + ++ g+l+ith+++ + ++ +++ v+e+ k+
  MMETSP1137-20121227|696_1 413 FTDVDFGLNMDSRVALVGANGTGKST----LLKLMLSELTPTRGEVRQS---------RSCKIGVYNQHSCDQLAAGMRLaKGEVLSPVSYLAHTFpSMSTQEIRNALGKFGLEGH-HHLQAI-ETLSGGQKSRVVFVELGLRRCHLLLLDEPTNHLDLETVDCLVKA----LHAFEGGVLVITHNVSLINKVCNQIWVIEDRKV 598
                579*********************97....6777777888999998743.........44444444444444444333220333444444333333367777899********955.555554.58*********99988999***************9765555555....567889**********************99776 PP

>> TIGR02314  ABC_MetN: D-methionine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.5   0.0    0.0066       0.4      21      56 ..      22      57 ..      11      94 .. 0.78
   2 !   29.4   0.0   1.4e-09   8.7e-08     108     231 ..     175     295 ..     170     312 .. 0.83
   3 !   29.6   0.1   1.2e-09   7.3e-08      23     217 ..     415     596 ..     396     602 .. 0.75

  Alignments for each domain:
  == domain 1    score: 7.5 bits;  conditional E-value: 0.0066
  TIGR02314 21 ldnvslfvpkgqifgvigasgagkstlircvnllek 56
               +++ +l + +g+ +g+ig  g gkst++  +   e 
  MMETSP1137-20121227|696_1 22 FHDAKLSLIHGRRYGLIGPNGCGKSTVMHAIGTGEV 57
               5677888999*****************998876665 PP

  == domain 2    score: 29.4 bits;  conditional E-value: 1.4e-09
  TIGR02314 108 elentpkekikrkvtellalvglsdkkdsyp.snlsggqkqrvaiaralasepkvllcdeatsaldpattqsilellkeinrrlgltillithemdvvkricdevavidkgeliekgtvseifsh 231
                el++   +  +++ + +l+ + + + ++ +p + +sgg + r+++aral  +p++ll de t  ld  +       l    ++ + t+++++h+ d +  +c  +    + +l+      e+f +
  MMETSP1137-20121227|696_1 175 ELADIGADSAEQRASAILSGLQFLEEQKNWPtAAFSGGWRMRISLARALFVKPRLLLLDEPTNHLDLHAVIW----LEGYLQKWKHTLVVVSHDRDFLTTVCTDILHCWRSKLVHYAGNYEVFEK 295
                77888889999999999997776666666763689*******************************876544....45555667789999*************9999999999988877777754 PP

  == domain 3    score: 29.6 bits;  conditional E-value: 1.2e-09
  TIGR02314  23 nvslfvpkgqifgvigasgagkstlircvnllekptsgavivdgkdlttlsnaelvkarrqigmifqhfnllssrtvfgnvalplelentpkekikrkvtellalvglsdkkds.ypsnlsggqkqrvaiaralasepkvllcdeatsaldpattqsilellkeinrrlgltillithemdvvkricdevavidkg 217
                +v++ +     + ++ga g+gkstl++ +    +pt g+v         + n + ++ +   gm + + ++ls  +          l+ t      + + + l   gl  +++      lsggqk rv          ++ll de t  ld  t   +++ l+      +  +l+ith++ ++ ++c+++ vi++ 
  MMETSP1137-20121227|696_1 415 DVDFGLNMDSRVALVGANGTGKSTLLKLMLSELTPTRGEVRQSRSCKIGVYNQHSCD-QLAAGMRLAKGEVLSPVSY---------LAHTFPSMSTQEIRNALGKFGLEGHHHLqAIETLSGGQKSRVVFVELGLRRCHLLLLDEPTNHLDLETVDCLVKALHAF----EGGVLVITHNVSLINKVCNQIWVIEDR 596
                555556666667889999999999999887777999999876655555555555554.4556776666666654432.........334444444455667788889987776514578***********999999******************99988888765....5579********************875 PP

>> TIGR02203  MsbA_lipidA: lipid A export permease/ATP-binding protein MsbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.0     0.089       5.3     350     379 ..      23      52 ..      12      56 .. 0.84
   2 !   17.0   0.0   5.8e-06   0.00035     469     504 ..     207     242 ..     194     271 .. 0.84
   3 !   21.9   0.0   1.9e-07   1.1e-05     332     390 ..     397     454 ..     384     457 .. 0.89
   4 !   22.9   0.0   9.5e-08   5.7e-06     470     546 ..     523     598 ..     513     610 .. 0.91

  Alignments for each domain:
  == domain 1    score: 3.2 bits;  conditional E-value: 0.089
  TIGR02203 350 dsislkveaGevvalvGrsGsGkstlvnll 379
                ++ +l++  G++  l+G+ G Gkst+++ +
  MMETSP1137-20121227|696_1  23 HDAKLSLIHGRRYGLIGPNGCGKSTVMHAI 52 
                667888899****************98765 PP

  == domain 2    score: 17.0 bits;  conditional E-value: 5.8e-06
  TIGR02203 469 skLsGGqRqRlaiaRallkdaPiLiLDeatsaLDne 504
                +  sGG R R+++aRal+    +L+LDe t  LD  
  MMETSP1137-20121227|696_1 207 AAFSGGWRMRISLARALFVKPRLLLLDEPTNHLDLH 242
                678******************************976 PP

  == domain 3    score: 21.9 bits;  conditional E-value: 1.9e-07
  TIGR02203 332 vefrnvtfrypgddrealdsislkveaGevvalvGrsGsGkstlvnllpRFyepdsGei 390
                + + nv+f+y++++ + + ++++ ++   +valvG  G Gkstl++l+   + p++Ge+
  MMETSP1137-20121227|696_1 397 LAVDNVSFHYENQE-DLFTDVDFGLNMDSRVALVGANGTGKSTLLKLMLSELTPTRGEV 454
                5789******8765.7899****************************988888888875 PP

  == domain 4    score: 22.9 bits;  conditional E-value: 9.5e-08
  TIGR02203 470 kLsGGqRqRlaiaRallkdaPiLiLDeatsaLDneseRlvqaaLerlmkgRttlviahRLstiek.aDrivvlddGki 546
                 LsGGq+ R+      l+   +L+LDe t  LD e    + +aL+++      lvi h +s i+k  ++i v++d k+
  MMETSP1137-20121227|696_1 523 TLSGGQKSRVVFVELGLRRCHLLLLDEPTNHLDLETVDCLVKALHAFEG--GVLVITHNVSLINKvCNQIWVIEDRKV 598
                69******************************************99865..58**********984689999999775 PP

>> TIGR01186  proV: glycine betaine/L-proline transport ATP binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.2   0.0     0.001     0.063       4      39 ..      17      52 ..      15      59 .. 0.91
   2 !   30.6   0.0   6.3e-10   3.8e-08      97     193 ..     175     268 ..     169     328 .. 0.82
   3 !    9.6   0.0    0.0016     0.095      11      50 ..     415     454 ..     410     467 .. 0.89
   4 !   14.2   0.0   6.3e-05    0.0038     108     208 ..     501     598 ..     483     607 .. 0.85

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 0.001
  TIGR01186  4 GlklgvndvdleieeGeiiviiGlsGsGkstlvrll 39
               G+k   +d++l++ +G  + +iG+ G+Gkst+++ +
  MMETSP1137-20121227|696_1 17 GGKTLFHDAKLSLIHGRRYGLIGPNGCGKSTVMHAI 52
               77888899************************9876 PP

  == domain 2    score: 30.6 bits;  conditional E-value: 6.3e-10
  TIGR01186  97 ellkideqerkekalealklvdleeyedryPd.elsGGmqqrvGlaralaaePdlllmdeafsaldPlirdelqdelvklqkklqktivfithdldea 193
                el++i ++  +++a   l  +++ e ++++P   +sGG + r+ laral ++P lll+de+   ld      l   l    +k ++t+v ++hd d  
  MMETSP1137-20121227|696_1 175 ELADIGADSAEQRASAILSGLQFLEEQKNWPTaAFSGGWRMRISLARALFVKPRLLLLDEPTNHLDLHAVIWLEGYL----QKWKHTLVVVSHDRDFL 268
                8999999999********99999666777775279*******************************77666665555....4567899******9865 PP

  == domain 3    score: 9.6 bits;  conditional E-value: 0.0016
  TIGR01186  11 dvdleieeGeiiviiGlsGsGkstlvrllnrliePtaGki 50 
                dvd+ ++    + ++G  G+Gkstl++l+   + Pt+G++
  MMETSP1137-20121227|696_1 415 DVDFGLNMDSRVALVGANGTGKSTLLKLMLSELTPTRGEV 454
                67777777778899***************9999*****98 PP

  == domain 4    score: 14.2 bits;  conditional E-value: 6.3e-05
  TIGR01186 108 ekalealklvdleeyed.ryPdelsGGmqqrvGlaralaaePdlllmdeafsaldPlirdelqdelvklqkklqktivfithdldealrlgdrivilkaGei 208
                +  ++al + +le++++ +  + lsGG++ rv  +        lll+de+   ld     e  d lvk  +  +  ++ ith++    +++++i ++++ ++
  MMETSP1137-20121227|696_1 501 QEIRNALGKFGLEGHHHlQAIETLSGGQKSRVVFVELGLRRCHLLLLDEPTNHLDL----ETVDCLVKALHAFEGGVLVITHNVSLINKVCNQIWVIEDRKV 598
                667899999***99998455688*********999999999**************6....45567777777888899999**99999999999998887665 PP

>> TIGR03258  PhnT: 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.0   0.0   0.00027     0.016      13      55 ..      11      53 ..       2      65 .. 0.89
   2 !   31.5   0.0   3.3e-10     2e-08     117     208 ..     186     273 ..     178     299 .. 0.75
   3 ?    5.0   0.0     0.038       2.3      11      59 ..     399     448 ..     391     459 .. 0.77
   4 !   13.2   0.0   0.00012    0.0071     121     218 ..     505     598 ..     492     616 .. 0.73

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 0.00027
  TIGR03258 13 slrvaygarvvlddlsleieaGellallGksGsGkttllrava 55
               +++++ g++++++d  l +  G    l+G+ G+Gk+t++ a+ 
  MMETSP1137-20121227|696_1 11 KFSISRGGKTLFHDAKLSLIHGRRYGLIGPNGCGKSTVMHAIG 53
               6788999********************************9984 PP

  == domain 2    score: 31.5 bits;  conditional E-value: 3.3e-10
  TIGR03258 117 ervadalklvqlsdaaarlp.aqlsGGqqqrvalaralvvrpdvllldeplsaldaqlrasvveelkalhrelpeltvlyvthdrdealvlad 208
                +r +  l  +q+ +  +++p a +sGG + r++laral v+p++llldep   ld +    +   l++      + t+++v+hdrd   ++  
  MMETSP1137-20121227|696_1 186 QRASAILSGLQFLEEQKNWPtAAFSGGWRMRISLARALFVKPRLLLLDEPTNHLDLHAVIWLEGYLQKW-----KHTLVVVSHDRDFLTTVCT 273
                455556677777777788883579******************************976655555555444.....4578899999986665555 PP

  == domain 3    score: 5.0 bits;  conditional E-value: 0.038
  TIGR03258  11 leslrvaygarv.vlddlsleieaGellallGksGsGkttllravaGfvk 59 
                +++++  y+ +  ++ d+ + ++    +al+G  G+Gk+tll+++   + 
  MMETSP1137-20121227|696_1 399 VDNVSFHYENQEdLFTDVDFGLNMDSRVALVGANGTGKSTLLKLMLSELT 448
                6777777776541567888888888999**************98766555 PP

  == domain 4    score: 13.2 bits;  conditional E-value: 0.00012
  TIGR03258 121 dalklvqlsdaaa.rlpaqlsGGqqqrvalaralvvrpdvllldeplsaldaqlrasvveelkalhrelpeltvlyvthdrdealvladkillmkeGsl 218
                +al   +l    + +  + lsGGq+ rv +      r ++llldep   ld +    +v   kalh    e  vl++th+ +    + ++i ++ + ++
  MMETSP1137-20121227|696_1 505 NALGKFGLEGHHHlQAIETLSGGQKSRVVFVELGLRRCHLLLLDEPTNHLDLETVDCLV---KALHA--FEGGVLVITHNVSLINKVCNQIWVIEDRKV 598
                5555555544333133468***********9999999**************98766665...56664..356778888887766667777777666665 PP

>> TIGR01184  ntrCD: nitrate ABC transporter, ATP-binding proteins C and D
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   0.0     0.013      0.77       3      31 ..      24      52 ..      22      98 .. 0.89
   2 !   26.5   0.0   1.5e-08   9.3e-07     104     176 ..     198     266 ..     181     276 .. 0.78
   3 !   27.8   0.1   5.9e-09   3.6e-07       3     176 ..     415     581 ..     413     594 .. 0.78

  Alignments for each domain:
  == domain 1    score: 7.1 bits;  conditional E-value: 0.013
  TIGR01184  3 dvdleikkgefislighsgcgkstllnli 31
               d +l++ +g    lig  gcgkst++  i
  MMETSP1137-20121227|696_1 24 DAKLSLIHGRRYGLIGPNGCGKSTVMHAI 52
               6678888999999***********99877 PP

  == domain 2    score: 26.5 bits;  conditional E-value: 1.5e-08
  TIGR01184 104 lreaadkrpeqlsggmkqrvaiaralsirpklllldepfgaldaltreelqekllkiveearvtvlmvthdvd 176
                l+e ++  ++ +sgg + r+++aral ++p+lllldep   ld  +   l+   l+   + + t ++v+hd d
  MMETSP1137-20121227|696_1 198 LEEQKNWPTAAFSGGWRMRISLARALFVKPRLLLLDEPTNHLDLHAVIWLEGY-LQ---KWKHTLVVVSHDRD 266
                455556667899******************************97666655443.33...34567788888866 PP

  == domain 3    score: 27.8 bits;  conditional E-value: 5.9e-09
  TIGR01184   3 dvdleikkgefislighsgcgkstllnliaglekptsgavilegkeitepgpdrmvvfqnysllpwltvrenialavdavlrdlskserreiveehielvglreaad.krpeqlsggmkqrvaiaralsirpklllldepfgaldaltreelqekllkiveearvtvlmvthdvd 176
                dvd+ ++    ++l+g  g gkstll l+     pt g v+   +  +    ++    q  +    + ++ ++   v    ++ +    +e +++ +   gl+   + + +e lsgg k rv        r +lllldep   ld  t +     l+k ++  +  vl++th+v 
  MMETSP1137-20121227|696_1 415 DVDFGLNMDSRVALVGANGTGKSTLLKLMLSELTPTRGEVRQ-SRSCKIGVYNQHSCDQLAA--GMRLAKGEVLSPVSYLAHTFPSMSTQE-IRNALGKFGLEGHHHlQAIETLSGGQKSRVVFVELGLRRCHLLLLDEPTNHLDLETVDC----LVKALHAFEGGVLVITHNVS 581
                677788888899***************9999999****9974.4555444444444444333..345678888888999998888887777.578899999987766267899*********9998777899*************877655....56666667778889999885 PP

>> TIGR01187  potA: polyamine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.0     0.065       3.9       1      16 [.      37      52 ..      37      78 .. 0.82
   2 !   35.7   0.0   1.8e-11   1.1e-09      74     190 ..     181     294 ..     175     326 .. 0.80
   3 ?    3.9   0.1     0.082       4.9       1      27 [.     428     454 ..     428     462 .. 0.83
   4 !   16.6   0.0   1.2e-05    0.0007      81     173 ..     503     592 ..     494     611 .. 0.71

  Alignments for each domain:
  == domain 1    score: 4.2 bits;  conditional E-value: 0.065
  TIGR01187  1 lLGpsGsGkttlLrll 16
               l+Gp G+Gk+t++  +
  MMETSP1137-20121227|696_1 37 LIGPNGCGKSTVMHAI 52
               79**********9876 PP

  == domain 2    score: 35.7 bits;  conditional E-value: 1.8e-11
  TIGR01187  74 kaeikervkeaLelvqleefakrkp.sqlsGGqrqrvalaravvkkPkiLLlDeplsaLDkkLrdqmqlelkalqeklGitvvlvthDqeealtmsdriavlrkGkiaqigepeeiye 190
                ++  ++r  ++L+  q+ e  k  p   +sGG r r++lara+  kP++LLlDep   LD +    +   l++ +     t+v+v hD++   t+   i    + k++  +   e++e
  MMETSP1137-20121227|696_1 181 ADSAEQRASAILSGLQFLEEQKNWPtAAFSGGWRMRISLARALFVKPRLLLLDEPTNHLDLHAVIWLEGYLQKWK----HTLVVVSHDRDFLTTVCTDILHCWRSKLVHYAGNYEVFE 294
                56678899999999887666666661579*******************************776555555555554....588999999988888777777777777766666666655 PP

  == domain 3    score: 3.9 bits;  conditional E-value: 0.082
  TIGR01187   1 lLGpsGsGkttlLrllaGleeldsGki 27 
                l+G+ G+Gk+tlL+l+    ++  G++
  MMETSP1137-20121227|696_1 428 LVGANGTGKSTLLKLMLSELTPTRGEV 454
                68************9877767777766 PP

  == domain 4    score: 16.6 bits;  conditional E-value: 1.2e-05
  TIGR01187  81 vkeaLelvqleefak.rkpsqlsGGqrqrvalaravvkkPkiLLlDeplsaLDkkLrdqmqlelkalqeklGitvvlvthDqeealtmsdriav 173
                +++aL    le+  + + ++ lsGGq+ rv +      + ++LLlDep   LD +  d + + l+a++      v+++th+ +    + ++i v
  MMETSP1137-20121227|696_1 503 IRNALGKFGLEGHHHlQAIETLSGGQKSRVVFVELGLRRCHLLLLDEPTNHLDLETVDCLVKALHAFEG----GVLVITHNVSLINKVCNQIWV 592
                667777777777665145778********************************8777666555544432....234456665555555555555 PP

>> TIGR01271  CFTR_protein: cystic fibrosis transmembrane conductor regulator (CFTR)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.8   0.0    0.0068      0.41    1229    1265 ..      16      52 ..       7      57 .. 0.92
   2 !   15.7   0.0   6.7e-06   0.00041     548     582 ..     208     242 ..     203     273 .. 0.92
   3 !   35.1   0.1   9.5e-12   5.7e-10     431     611 ..     399     583 ..     367     612 .. 0.70

  Alignments for each domain:
  == domain 1    score: 5.8 bits;  conditional E-value: 0.0068
  TIGR01271 1229 eagravlqdlsfsveagqrvgllgrtgsgkstllsal 1265
                  +g+++++d  +s+  g+r gl+g  g+gkst++ a+
  MMETSP1137-20121227|696_1   16 RGGKTLFHDAKLSLIHGRRYGLIGPNGCGKSTVMHAI 52  
                 6899*****************************9886 PP

  == domain 2    score: 15.7 bits;  conditional E-value: 6.7e-06
  TIGR01271 548 tlsggqrarislaravykdadlylldspfsyldvv 582
                ++sgg r rislara++    l lld p ++ld+ 
  MMETSP1137-20121227|696_1 208 AFSGGWRMRISLARALFVKPRLLLLDEPTNHLDLH 242
                579*****************************975 PP

  == domain 3    score: 35.1 bits;  conditional E-value: 9.5e-12
  TIGR01271 431 fsnlslyv...tpvlknislklekgqllavagstgsgkssllmmilgelepsegkikhs..grisfspqvsw..impgt..ikdniifglsydeyrytsvikacqleediallaekdktvlgeggitlsggqrarislaravykdadlylldspfsyldvvtekeifesclckllan.k.trilvtsklehl 611
                  n+s++      ++ ++++ l+    +a+ g+ g+gks+ll ++l el p+ g ++ s   +i   +q s   +  g    k +++  +sy  + + s+  + ++ + + ++    +  l     tlsggq++r+ +     + + l lld p ++ld+ t       cl k l +     +++t  +  +
  MMETSP1137-20121227|696_1 399 VDNVSFHYenqEDLFTDVDFGLNMDSRVALVGANGTGKSTLLKLMLSELTPTRGEVRQSrsCKIGVYNQHSCdqLAAGMrlAKGEVLSPVSYLAHTFPSM-STQEIRNALGKFGLEGHHHLQA-IETLSGGQKSRVVFVELGLRRCHLLLLDEPTNHLDLETV-----DCLVKALHAfEgGVLVITHNVSLI 583
                556665531113567899999999999***************************99975227888777776422455533268999********999996.66789999****9999888864.569*************99*****************9885.....466655433120334445555554 PP

>> TIGR02633  xylG: D-xylose ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   0.0     0.011      0.65      15      47 ..      20      52 ..      12      81 .. 0.87
   2 !   21.0   0.0   3.6e-07   2.2e-05     377     439 ..     182     244 ..     165     283 .. 0.72
   3 !   10.5   0.0   0.00053     0.032      18      52 ..     414     449 ..     396     456 .. 0.79
   4 !   19.1   0.0   1.3e-06   8.1e-05     380     481 ..     500     598 ..     472     608 .. 0.81

  Alignments for each domain:
  == domain 1    score: 6.2 bits;  conditional E-value: 0.011
  TIGR02633 15 kaldnidlklraGeivslcGenGaGkstlmkvl 47
               + +++ +l l  G   +l G nG+Gkst+m  +
  MMETSP1137-20121227|696_1 20 TLFHDAKLSLIHGRRYGLIGPNGCGKSTVMHAI 52
               556788999999******************865 PP

  == domain 2    score: 21.0 bits;  conditional E-value: 3.6e-07
  TIGR02633 377 aaelkaieeeikrlkvktaspdlpiarlsGGnqqkavlakllllnprvlildeptrGvdvGak 439
                ++ ++  ++ ++ l+    + + p a++sGG + +  la+ l ++pr+l+ldept  +d+ a 
  MMETSP1137-20121227|696_1 182 DSAEQRASAILSGLQFLEEQKNWPTAAFSGGWRMRISLARALFVKPRLLLLDEPTNHLDLHAV 244
                444444444555555556666777888999999999999999999999999999999998774 PP

  == domain 3    score: 10.5 bits;  conditional E-value: 0.00053
  TIGR02633  18 dnidlklraGeivslcGenGaGkstlmkv.lsgvyp 52 
                 ++d+ l+    v+l G nG+Gkstl+k+ ls + p
  MMETSP1137-20121227|696_1 414 TDVDFGLNMDSRVALVGANGTGKSTLLKLmLSELTP 449
                678899999999****************72555555 PP

  == domain 4    score: 19.1 bits;  conditional E-value: 1.3e-06
  TIGR02633 380 lkaieeeikrlkvktaspdlpiarlsGGnqqkavlakllllnprvlildeptrGvdvGakyeiyklinqlaqeGvaiivvsselaevlGlsdrvlvigeGkl 481
                 + i++++ ++ +   +   +i +lsGG++ + v+  l l + ++l+ldept  +d+ +      l+++l +    ++v++ +++ +  +++++ vi++ k+
  MMETSP1137-20121227|696_1 500 TQEIRNALGKFGLEGHHHLQAIETLSGGQKSRVVFVELGLRRCHLLLLDEPTNHLDLETVD---CLVKALHAFEGGVLVITHNVSLINKVCNQIWVIEDRKV 598
                5678888889999999999999999999999999999999999999999999999997644...55555555555677778888888888888888877766 PP

>> TIGR00954  3a01203: peroxysomal long chain fatty acyl transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.6   0.1   8.6e-10   5.2e-08     464     639 ..      17     264 ..       5     270 .. 0.87
   2 !   25.5   0.0   1.5e-08   9.1e-07     452     643 ..     396     583 ..     342     589 .. 0.86

  Alignments for each domain:
  == domain 1    score: 29.6 bits;  conditional E-value: 8.6e-10
  TIGR00954 464 egdvlieeLsfevksGnhlLiiGPnGcGKsslfRilgelWPvygglltkpeegklFyvPqrPYmslg.tlRdqiiYPdssedfkerglsdkdLeqiLeevkLedlleregg.........................................................................wdavqdW.kdvLsgGekqRiamARlfyHkPkfavLDEctsAvsvdvEdklyelakevgitllsvshr 639
                 g+ l ++ ++ + +G+   +iGPnGcGKs ++  +g    v   +  +p+   +  v q    s   t  + ++  d+         + k+Le+ Lee  ++++   +                                                                           ++  ++W     sgG + Ri++AR ++ kP+  +LDE t+ + +     l   +++ + tl+ vsh 
  MMETSP1137-20121227|696_1  17 GGKTLFHDAKLSLIHGRRYGLIGPNGCGKSTVMHAIGT-GEVEEIRNAIPPGMDILLVEQEVQASDEiTALQMVVSADTRRTALL--AEAKELEKTLEEGGVKYIKAAKLDgddfsvgakvkfegrvvtilegldkdgdytiqdvfdedgeiagrlsdvydeladigadsaeqrasailsglqfLEEQKNWpTAAFSGGWRMRISLARALFVKPRLLLLDEPTNHLDLHAVIWLEGYLQKWKHTLVVVSHD 264
                67889999999999*********************985.567778889******************9888888887777665544..45689*******99999988777678999*******************************************************************99******44679****************************876665555556788888888888885 PP

  == domain 2    score: 25.5 bits;  conditional E-value: 1.5e-08
  TIGR00954 452 gikfeniplvtPegdvlieeLsfevksGnhlLiiGPnGcGKsslfR.ilgelWPvygglltkpeegklFyvPqrPY..mslg..tlRdqiiYPdssedfkerglsdkdLeqiLeevkLedllereggwdavqdWkdvLsgGekqRiamARlfyHkPkfavLDEctsAvsvdvEdklyelakevgitllsvshrksLw 643
                ++ ++n+     + + l  ++ f ++  + + ++G nG GKs l + +l+el P++g +++  +++k+    q+    ++ g    +  ++ P s    +   +s +++ + L +  Le        ++a+    + LsgG+k R+ +  l   + +  +LDE t+ + ++  d l ++++ ++  +l ++h  sL+
  MMETSP1137-20121227|696_1 396 ILAVDNVSFHYENQEDLFTDVDFGLNMDSRVALVGANGTGKSTLLKlMLSELTPTRGEVRQ-SRSCKIGVYNQHSCdqLAAGmrLAKGEVLSPVSYLAHTFPSMSTQEIRNALGKFGLEG----HHHLQAI----ETLSGGQKSRVVFVELGLRRCHLLLLDEPTNHLDLETVDCLVKALHAFEGGVLVITHNVSLI 583
                5678899999999999***************************998458******987765.688999888888752255554244689**************************99863....4556665....79**********************************************************98 PP

>> TIGR00955  3a01204: pigment precursor permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.0     0.092       5.5      35      74 ..      16      55 ..       6      72 .. 0.80
   2 !   20.4   0.0   5.9e-07   3.6e-05     166     198 ..     208     240 ..     185     253 .. 0.91
   3 !    6.5   0.0    0.0093      0.56      50      72 ..     422     444 ..     379     460 .. 0.78
   4 !   20.0   0.0   7.9e-07   4.7e-05     164     212 ..     521     569 ..     498     615 .. 0.82

  Alignments for each domain:
  == domain 1    score: 3.2 bits;  conditional E-value: 0.092
  TIGR00955 35 kpekellknvsGvaksGellAvlGsSGaGKtTLlnalafr 74
               ++ k+l ++    +  G    ++G+ G GK+T + a+ + 
  MMETSP1137-20121227|696_1 16 RGGKTLFHDAKLSLIHGRRYGLIGPNGCGKSTVMHAIGTG 55
               5667777777777778888899*************99765 PP

  == domain 2    score: 20.4 bits;  conditional E-value: 5.9e-07
  TIGR00955 166 glSgGerkRlalaselltdPilLfcDEPTsGLD 198
                + SgG r R++la  l  +P lL++DEPT  LD
  MMETSP1137-20121227|696_1 208 AFSGGWRMRISLARALFVKPRLLLLDEPTNHLD 240
                68******************************9 PP

  == domain 3    score: 6.5 bits;  conditional E-value: 0.0093
  TIGR00955  50 sGellAvlGsSGaGKtTLlnala 72 
                    +A++G+ G GK+TLl+ + 
  MMETSP1137-20121227|696_1 422 MDSRVALVGANGTGKSTLLKLML 444
                55569**************9754 PP

  == domain 4    score: 20.0 bits;  conditional E-value: 7.9e-07
  TIGR00955 164 vkglSgGerkRlalaselltdPilLfcDEPTsGLDsfsaasvvkvLkkl 212
                + +lSgG++ R+ + +  l   +lL++DEPT  LD  +   +vk+L+ +
  MMETSP1137-20121227|696_1 521 IETLSGGQKSRVVFVELGLRRCHLLLLDEPTNHLDLETVDCLVKALHAF 569
                468*****************************************99854 PP

>> TIGR02323  CP_lyasePhnK: phosphonate C-P lyase system protein PhnK
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.0       0.3        18      24      49 ..      29      54 ..      11      63 .. 0.83
   2 !   20.6   0.0   8.8e-07   5.3e-05     138     175 ..     205     242 ..     180     278 .. 0.77
   3 !   23.6   0.0   1.1e-07   6.5e-06       2      64 ..     395     459 ..     394     478 .. 0.89
   4 ?    2.0   0.0      0.44        27     140     215 ..     522     597 ..     508     601 .. 0.80

  Alignments for each domain:
  == domain 1    score: 2.5 bits;  conditional E-value: 0.3
  TIGR02323 24 lypGevlgivGesGsGkstllkalaa 49
               l  G+  g++G  G Gkst+++a+ +
  MMETSP1137-20121227|696_1 29 LIHGRRYGLIGPNGCGKSTVMHAIGT 54
               5678899**************99975 PP

  == domain 2    score: 20.6 bits;  conditional E-value: 8.8e-07
  TIGR02323 138 kpaafsGGmqqrlqiarnlvtrprlvfm.eptGGlvsvq 175
                  aafsGG + r+ +ar+l  +prl+++ ept  l  + 
  MMETSP1137-20121227|696_1 205 PTAAFSGGWRMRISLARALFVKPRLLLLdEPTNHL-DLH 242
                3478************************9***887.333 PP

  == domain 3    score: 23.6 bits;  conditional E-value: 1.1e-07
  TIGR02323   2 pllevselsksygskkgcr..vsf.lypGevlgivGesGsGkstllkalaarlladaGevtyesrs 64 
                p+l v ++s +y +++ ++  v+f l     +++vG  G+Gkstllk + ++l++++Gev+  srs
  MMETSP1137-20121227|696_1 395 PILAVDNVSFHYENQEDLFtdVDFgLNMDSRVALVGANGTGKSTLLKLMLSELTPTRGEVRQ-SRS 459
                89*************998768*****99*******************************985.444 PP

  == domain 4    score: 2.0 bits;  conditional E-value: 0.44
  TIGR02323 140 aafsGGmqqrlqiarnlvtrprlvfm.eptGGlvsvqarllllrglvrelglaviivth.lavarllaqrllvmkqGr 215
                +++sGG + r+      + r +l+++ ept  l  +++   l+++l   ++  v+++th ++++  +++++ v++  +
  MMETSP1137-20121227|696_1 522 ETLSGGQKSRVVFVELGLRRCHLLLLdEPTNHLD-LETVDCLVKALHA-FEGGVLVITHnVSLINKVCNQIWVIEDRK 597
                589********9999999999999999***9983.3333446677765.88899999999999998888888887655 PP

>> TIGR00990  3a0801s09: mitochondrial precursor proteins import receptor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.2   6.4   5.8e-16   3.5e-14      57     213 ..     661     824 ..     625     840 .. 0.75

  Alignments for each domain:
  == domain 1    score: 50.2 bits;  conditional E-value: 5.8e-16
  TIGR00990  57 rkgqeqkeskpklskkerrkrkdaekeaekkaeekk....stapkaaavesad....elpeidessvvnlseeerkkyaaklkekGnkayrnkdfdkaielyskalll....kedPvyysnraacynaladlekvvedttaaleldpdyvkalnrranaydqlgkyada 213
                r+ +e +      +k  r +   aekea  ka++++    + a + + v +a+      +  d ++    s    +    +l+++Gnkay+ k f+ a++ ++ka+ l    k  P  +snr+a +  l++  k +ed+ a +++dp + k   rr na   l +y++a
  MMETSP1137-20121227|696_1 661 RERKEAR-----EAKSAREEAERAEKEAAAKAAAEAaaaaAAAKRGSVVPPASgtssGAAGADGAAAPPASSPAVESRVTELQQQGNKAYKAKRFEAAVDDFTKAIALcaagKVPPQLHSNRSAAFIELGQPTKALEDADACVAIDPRWPKGYSRRGNALHALRRYREA 824
                2223333.....3444444555555555443322220000222222333344311003456777888888888999999***************************8656667889***************************************************99 PP

>> TIGR01192  chvA: glucan exporter ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       6.8   4.1e+02     359     379 ..      30      50 ..      19      62 .. 0.81
   2 !   12.4   0.0   0.00016    0.0095     471     508 ..     208     245 ..     167     287 .. 0.87
   3 !   17.7   0.0   3.9e-06   0.00024     337     393 ..     399     455 ..     376     476 .. 0.89
   4 !   15.6   0.0   1.7e-05     0.001     471     556 ..     523     608 ..     517     630 .. 0.84

  Alignments for each domain:
  == domain 1    score: -2.9 bits;  conditional E-value: 6.8
  TIGR01192 359 kagqtvaivgptgagkttlin 379
                  g+   ++gp g gk+t++ 
  MMETSP1137-20121227|696_1  30 IHGRRYGLIGPNGCGKSTVMH 50 
                56777889*********9875 PP

  == domain 2    score: 12.4 bits;  conditional E-value: 0.00016
  TIGR01192 471 rlsggerqrlaiarailknapilvldeatsaldvetea 508
                 +sgg r r+++ara++    +l+lde t  ld+ + +
  MMETSP1137-20121227|696_1 208 AFSGGWRMRISLARALFVKPRLLLLDEPTNHLDLHAVI 245
                68*******************************98766 PP

  == domain 3    score: 17.7 bits;  conditional E-value: 3.9e-06
  TIGR01192 337 frdisfefanssqgvrdvsfeakagqtvaivgptgagkttlinllqrvydpksgqil 393
                  ++sf++ n ++   dv f       va+vg  g+gk+tl+ l+     p+ g++ 
  MMETSP1137-20121227|696_1 399 VDNVSFHYENQEDLFTDVDFGLNMDSRVALVGANGTGKSTLLKLMLSELTPTRGEVR 455
                579******************************************999999999875 PP

  == domain 4    score: 15.6 bits;  conditional E-value: 1.7e-05
  TIGR01192 471 rlsggerqrlaiarailknapilvldeatsaldvetearvkdaidalrknrttfiiahrlstvreadlvlfldqgrliek..gsfdel 556
                 lsgg++ r+      l+   +l+lde t  ld+et   + +a+ a++     ++i+h +s + +    +++ + r +++  g f+e 
  MMETSP1137-20121227|696_1 523 TLSGGQKSRVVFVELGLRRCHLLLLDEPTNHLDLETVDCLVKALHAFE--GGVLVITHNVSLINKVCNQIWVIEDRKVNRfaGEFEEY 608
                79**********************************988888998885..57899******999987777777777666433677775 PP

>> TIGR00957  MRP_assoc_pro: multi drug resistance-associated protein (MRP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.0      0.22        13     647     691 ..      15      60 ..       8      77 .. 0.80
   2 !   14.5   0.0   1.5e-05   0.00091     760     872 ..     208     314 ..     187     379 .. 0.71
   3 !    7.4   0.0    0.0021      0.13     639     697 ..     399     456 ..     389     475 .. 0.82
   4 !   14.2   0.0   1.9e-05    0.0011    1418    1497 ..     520     598 ..     509     620 .. 0.80

  Alignments for each domain:
  == domain 1    score: 0.8 bits;  conditional E-value: 0.22
  TIGR00957 647 ardepptlngltlsipegalvavvgqvgcgkssllsal.laemdkv 691
                +r+    ++  +ls+ +g    ++g+ gcgks+++ a+  +e++ +
  MMETSP1137-20121227|696_1  15 SRGGKTLFHDAKLSLIHGRRYGLIGPNGCGKSTVMHAIgTGEVEEI 60 
                5666666788889999999999************999834666665 PP

  == domain 2    score: 14.5 bits;  conditional E-value: 1.5e-05
  TIGR00957 760 nlsggqkqrvslaravysdadiyllddplsavdahvakhifekvigpkgllkn..ktrilvthgisylpqv..dviivlsdgkisemgsyqelldrdgafaeflrtyasaedeldae 872
                 +sgg + r+slara++ +  + lld+p   +d h        vi  +g l++  +t ++v+h   +l  v  d++       +   g+y+ +   +  fa  l +y ++ + ++ +
  MMETSP1137-20121227|696_1 208 AFSGGWRMRISLARALFVKPRLLLLDEPTNHLDLHA-------VIWLEGYLQKwkHTLVVVSHDRDFLTTVctDILHCWRSKLVHYAGNYEVF---EKVFASKLEEYNKEYERQQKK 314
                579*************************99999884.......7888898875326889999**9**99762255555666666677777654...457888888887654433332 PP

  == domain 3    score: 7.4 bits;  conditional E-value: 0.0021
  TIGR00957 639 vknatftwardepptlngltlsipegalvavvgqvgcgkssllsallaemdkvegkval 697
                v n +f + ++e   +  +++ +   + va+vg  g gks+ll  +l+e+    g+v  
  MMETSP1137-20121227|696_1 399 VDNVSFHYENQE-DLFTDVDFGLNMDSRVALVGANGTGKSTLLKLMLSELTPTRGEVRQ 456
                566666665444.45678999999999***********************999999875 PP

  == domain 4    score: 14.2 bits;  conditional E-value: 1.9e-05
  TIGR00957 1418 ggenlsvgqrqlvclarallrktkilvldeataavdletdnliqstirtqfedctvltiahrlntimdyt.rvlvldkgev 1497
                   e ls gq+  v +    lr++++l+lde t  +dlet + +  ++   fe   vl i+h +  i     ++ v++  +v
  MMETSP1137-20121227|696_1  520 AIETLSGGQKSRVVFVELGLRRCHLLLLDEPTNHLDLETVDCLVKALH-AFE-GGVLVITHNVSLINKVCnQIWVIEDRKV 598 
                 5689***********************************887776665.476.5799999999888765413445555555 PP

>> TIGR03415  ABC_choXWV_ATP: choline ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.1      0.14       8.6      40      70 ..      22      52 ..      13      60 .. 0.87
   2 !   25.4   0.0   2.3e-08   1.4e-06     141     272 ..     184     316 ..     174     362 .. 0.66
   3 ?    3.4   0.1      0.11       6.6      53      83 ..     426     456 ..     414     481 .. 0.77
   4 ?    6.5   0.0     0.013      0.76     160     243 ..     519     598 ..     496     699 .. 0.87

  Alignments for each domain:
  == domain 1    score: 3.0 bits;  conditional E-value: 0.14
  TIGR03415 40 vadasldveeGeilvlmGlsGsGkssllrav 70
                +da l++ +G    l+G  G Gks+++ a+
  MMETSP1137-20121227|696_1 22 FHDAKLSLIHGRRYGLIGPNGCGKSTVMHAI 52
               5899************************998 PP

  == domain 2    score: 25.4 bits;  conditional E-value: 2.3e-08
  TIGR03415 141 rrkrveeqle.lvglaeWadkkvgelsGGmqqrvGlarafateadillmdePfsaldPliraklqdellelqkklkktivfvshdldealklGnriaimegGrivqlgtpeei....vlkPaneyvadfvahtnPln 272
                  +r+++ l  l  l+e ++  +  +sGG + r+ lara+ ++  +ll+deP   ld      l        +k k+t+v vshd d    + + i      ++v +    e+     ++  +ey +++  +   l+
  MMETSP1137-20121227|696_1 184 AEQRASAILSgLQFLEEQKNWPTAAFSGGWRMRISLARALFVKPRLLLLDEPTNHLDLHAVIWLEGY----LQKWKHTLVVVSHDRDFLTTVCTDILHCWRSKLVHYAGNYEVfekvFASKLEEYNKEYERQQKKLK 316
                45555555541334555556667789*******************************7766666654....468899********9988888888877777777766554443000044455566666665555555 PP

  == domain 3    score: 3.4 bits;  conditional E-value: 0.11
  TIGR03415  53 lvlmGlsGsGkssllravnglnpvsrGkvlv 83 
                + l+G  G+Gks+ll+ +    + +rG+v+ 
  MMETSP1137-20121227|696_1 426 VALVGANGTGKSTLLKLMLSELTPTRGEVRQ 456
                5699***********9876666668998874 PP

  == domain 4    score: 6.5 bits;  conditional E-value: 0.013
  TIGR03415 160 kkvgelsGGmqqrvGlarafateadillmdePfsaldPliraklqdellelqkklkktivfvshdldealklGnriaimegGri 243
                + ++ lsGG + rv +       + +ll+deP   ld     +  d l++  + ++  ++ ++h++    k+ n+i ++e+ ++
  MMETSP1137-20121227|696_1 519 QAIETLSGGQKSRVVFVELGLRRCHLLLLDEPTNHLDL----ETVDCLVKALHAFEGGVLVITHNVSLINKVCNQIWVIEDRKV 598
                45678**********99999999*************94....567899999999999999999999999999999999998765 PP

>> TIGR00630  uvra: excinuclease ABC subunit A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.5   0.0   0.00084      0.05     816     894 ..     194     268 ..     185     275 .. 0.68
   2 ?    3.5   0.0     0.056       3.4     620     660 ..     410     450 ..     379     473 .. 0.82
   3 !   17.2   0.1   4.1e-06   0.00025     812     896 ..     507     585 ..     488     594 .. 0.82

  Alignments for each domain:
  == domain 1    score: 9.5 bits;  conditional E-value: 0.00084
  TIGR00630 816 GLgYiklGq..pattLsGGeaqrvkLakeLskrstgktlyilDePttGLhfdDikkLlevlqrlvdkGntvvviehnldvi 894
                GL++++  +  p+ ++sGG   r+ La+ L  +     l +lDePt  L ++ +  L   lq+     +t+vv+ h+ d +
  MMETSP1137-20121227|696_1 194 GLQFLEEQKnwPTAAFSGGWRMRISLARALFVK---PRLLLLDEPTNHLDLHAVIWLEGYLQKW---KHTLVVVSHDRDFL 268
                555554443114566788888888888888765...4588888888888777777666655554...46888888877755 PP

  == domain 2    score: 3.5 bits;  conditional E-value: 0.056
  TIGR00630 620 ennlkdidvsiplglltvitGvsgsGkstLindiLvkalee 660
                e+ + d+d  + ++  +++ G  g GkstL++ +L + + +
  MMETSP1137-20121227|696_1 410 EDLFTDVDFGLNMDSRVALVGANGTGKSTLLKLMLSELTPT 450
                455679999999999****************9999877655 PP

  == domain 3    score: 17.2 bits;  conditional E-value: 4.1e-06
  TIGR00630 812 lvdvGLgYiklGqpattLsGGeaqrvkLakeLskrstgktlyilDePttGLhfdDikkLlevlqrlvdkGntvvviehnldviks 896
                l + GL+  +  q+  tLsGG   rv +  eL  r  +  l +lDePt  L ++ +  L++ l+ +      v+vi hn+ +i +
  MMETSP1137-20121227|696_1 507 LGKFGLEGHHHLQAIETLSGGQKSRVVF-VELGLRRCH--LLLLDEPTNHLDLETVDCLVKALHAFE---GGVLVITHNVSLINK 585
                666777777777999***********76.577777665..899****************99999874...3599******99964 PP

>> TIGR01257  rim_protein: rim ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.8   0.0   0.00013    0.0081    2067    2138 ..     205     273 ..     126     283 .. 0.75
   2 !    9.3   0.0   0.00037     0.022    1967    2138 ..     425     588 ..     395     601 .. 0.72

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 0.00013
  TIGR01257 2067 lagtysggnkrklstaialigcpplvlldepttgmdpqarrmlwntivsiiregravvltshsmeecealct 2138
                  + ++sgg + ++s a al   p l+lldept  +d +a   l      + + ++++v+ sh  +   ++ct
  MMETSP1137-20121227|696_1  205 PTAAFSGGWRMRISLARALFVKPRLLLLDEPTNHLDLHAVIWLEGY---LQKWKHTLVVVSHDRDFLTTVCT 273 
                 46789*******************************9885443322...33445666777777777777776 PP

  == domain 2    score: 9.3 bits;  conditional E-value: 0.00037
  TIGR01257 1967 cfgllgvngagktttfkmltgdttvtsgdatvagksiltnisdvhqnmgycpqfdaiddlltgrehlylyarlrgvpaeeiekvanwsikslglslyadrla.gtysggnkrkls.taialigcpplvlldepttgmdpqarrmlwntivsiiregravvltshsmeecealct 2138
                  + l+g ng+gk+t +k++  + t t g+     +s    + + h     c q+ a   l  g     +    +  p+   +++ n ++  +gl  +    a  t sgg+k ++    + l  c  l+lldept  +d ++   l +++ +   eg  v++ +h +   + +c 
  MMETSP1137-20121227|696_1  425 RVALVGANGTGKSTLLKLMLSELTPTRGEVRQ-SRSCKIGVYNQH----SCDQLAAGMRLAKGEVLSPVSYLAHTFPSMSTQEIRN-ALGKFGLEGHHHLQAiETLSGGQKSRVVfVELGLRRC-HLLLLDEPTNHLDLETVDCLVKALHAF--EG-GVLVITHNVSLINKVCN 588 
                 56899**********************99764.455555555444....6999999888888765443333345667766666666.5677888776665442799**9997765166778777.58999******9999888777665543..33.34444466666666665 PP

>> TIGR02552  LcrH_SycD: type III secretion low calcium response chaperone LcrH/SycD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   0.1   1.3e-06   7.5e-05      19     133 ..     735     853 ..     721     855 .. 0.89

  Alignments for each domain:
  == domain 1    score: 20.3 bits;  conditional E-value: 1.3e-06
  TIGR02552  19 eaiYalAYnlyqqgkyeeAeklFq...lLaaldpteakywlgLaaclqalkeyeeAiaaYalaaaldlddprpvyhaaecllalgekeeAlkaLklaieiaeekeey.selkeraeaml 133
                +++ +++ ++y+++++e A+  F+   +L+a+     + +   +a++ +l++ ++A++  ++++a+d+  p+ + ++++ l al +++eA++a + a++++ e+++  + l+  ++am+
  MMETSP1137-20121227|696_1 735 TELQQQGNKAYKAKRFEAAVDDFTkaiALCAAGKVPPQLHSNRSAAFIELGQPTKALEDADACVAIDPRWPKGYSRRGNALHALRRYREAQQAYEHALRLDPENQAVrTSLRGCIQAMI 853
                5677788899*************86668**************************************************************************87754155666666666 PP

>> TIGR02521  type_IV_pilW: type IV pilus biogenesis/stability protein PilW
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.0       2.7   1.6e+02     128     163 ..     727     762 ..     723     774 .. 0.76
   2 !   21.7   0.0   4.3e-07   2.6e-05      38     101 ..     778     841 ..     771     843 .. 0.93

  Alignments for each domain:
  == domain 1    score: -0.5 bits;  conditional E-value: 2.7
  TIGR02521 128 dpkYeqparsyeNaglcalkagdtekaekyltralk 163
                +p++e++   ++  g  a+ka+++e a   +t+a++
  MMETSP1137-20121227|696_1 727 SPAVESRVTELQQQGNKAYKAKRFEAAVDDFTKAIA 762
                677777777777777778888888888888888776 PP

  == domain 2    score: 21.7 bits;  conditional E-value: 4.3e-07
  TIGR02521  38 aleYleqgdlekAkenlekAleldpkdadanlalAlyyqqlgelekAeesfrkAltlkpnngdv 101
                 ++++e g+ +kA e+ +  +++dp   + ++ ++ ++  l++  +A++++++Al+l+p+n +v
  MMETSP1137-20121227|696_1 778 SAAFIELGQPTKALEDADACVAIDPRWPKGYSRRGNALHALRRYREAQQAYEHALRLDPENQAV 841
                6789999*****************************************************9876 PP

>> TIGR01194  cyc_pep_trnsptr: cyclic peptide transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.0      0.26        16     371     385 ..      36      50 ..      22      56 .. 0.79
   2 ?    2.4   0.0      0.16       9.5     460     533 ..     200     268 ..     171     285 .. 0.75
   3 !   11.7   0.0   0.00025     0.015     364     398 ..     420     454 ..     397     460 .. 0.86
   4 ?   -3.3   0.0       8.8   5.3e+02     468     496 ..     522     550 ..     500     556 .. 0.85

  Alignments for each domain:
  == domain 1    score: 1.7 bits;  conditional E-value: 0.26
  TIGR01194 371 yivGenGcGkstlik 385
                 ++G nGcGkst++ 
  MMETSP1137-20121227|696_1  36 GLIGPNGCGKSTVMH 50 
                579*********975 PP

  == domain 2    score: 2.4 bits;  conditional E-value: 0.16
  TIGR01194 460 edlnystttdlstGqrkrlalvnayleerpvllldewaadqdpafkrvfyeellpdlkrrGktilvishddryf 533
                e+ n+  t+++s G r r++l  a + +  +lllde +   d   + v + e    l++   t++v+shd  ++
  MMETSP1137-20121227|696_1 200 EQKNWP-TAAFSGGWRMRISLARALFVKPRLLLLDEPTNHLDL--HAVIWLE--GYLQKWKHTLVVVSHDRDFL 268
                456777.99***************9999999*****9988884..5555544..34666678999999997765 PP

  == domain 3    score: 11.7 bits;  conditional E-value: 0.00025
  TIGR01194 364 iasGelvyivGenGcGkstliklllGlyipqeGel 398
                ++    v +vG nG Gkstl+kl+l    p  Ge+
  MMETSP1137-20121227|696_1 420 LNMDSRVALVGANGTGKSTLLKLMLSELTPTRGEV 454
                555566889*********************99997 PP

  == domain 4    score: -3.3 bits;  conditional E-value: 8.8
  TIGR01194 468 tdlstGqrkrlalvnayleerpvllldew 496
                  ls Gq+ r+ +v   l    +lllde 
  MMETSP1137-20121227|696_1 522 ETLSGGQKSRVVFVELGLRRCHLLLLDEP 550
                5799***********99999999999995 PP

>> TIGR00956  3a01205: pleiotropic drug resistance family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   0.0     0.024       1.4     907     937 ..     214     243 ..     207     257 .. 0.77
   2 ?    2.0   0.0       0.1       6.2     792     809 ..     426     443 ..     372     503 .. 0.71
   3 !    7.5   0.0    0.0022      0.13     208     255 ..     522     569 ..     517     672 .. 0.91

  Alignments for each domain:
  == domain 1    score: 4.1 bits;  conditional E-value: 0.024
  TIGR00956 907 RkrltigveLvAkPklllFlDePtsGLDsqt 937
                R r++++  L  kP  ll lDePt  LD ++
  MMETSP1137-20121227|696_1 214 RMRISLARALFVKP-RLLLLDEPTNHLDLHA 243
                77888888888888.5667899998888665 PP

  == domain 2    score: 2.0 bits;  conditional E-value: 0.1
  TIGR00956 792 tALmGasGAGkttLlnvL 809
                 AL+Ga G Gk tLl  +
  MMETSP1137-20121227|696_1 426 VALVGANGTGKSTLLKLM 443
                466666666666666542 PP

  == domain 3    score: 7.5 bits;  conditional E-value: 0.0022
  TIGR00956 208 RGvsGGerkRvsiaevlvakakiqcwDnatrGLDsatalefvkalkts 255
                  +sGG++ Rv   e  + + +++++D+ t  LD  t   +vkal++ 
  MMETSP1137-20121227|696_1 522 ETLSGGQKSRVVFVELGLRRCHLLLLDEPTNHLDLETVDCLVKALHAF 569
                568999999999999999999999999999999999999999998764 PP

>> TIGR02546  III_secr_ATP: type III secretion apparatus H+-transporting two-sector ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.0   0.1   0.00088     0.053     138     169 ..      24      55 ..      16      61 .. 0.89
   2 ?    1.9   0.0      0.26        16     147     168 ..     424     445 ..     415     450 .. 0.84

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 0.00088
  TIGR02546 138 DglltvgeGqRiGifaeaGvGkstLlsmiarg 169
                D+ l + +G R G+ +  G+Gkst++++i  g
  MMETSP1137-20121227|696_1  24 DAKLSLIHGRRYGLIGPNGCGKSTVMHAIGTG 55 
                77789999*******************99776 PP

  == domain 2    score: 1.9 bits;  conditional E-value: 0.26
  TIGR02546 147 qRiGifaeaGvGkstLlsmiar 168
                 R+ + ++ G+GkstLl+ + +
  MMETSP1137-20121227|696_1 424 SRVALVGANGTGKSTLLKLMLS 445
                69999************97765 PP

>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.5   0.0     8e-05    0.0048      27      43 ..      36      52 ..      25      53 .. 0.92
   2 ?   -1.8   0.1       1.6        99     876     895 ..     300     319 ..     285     347 .. 0.54
   3 ?   -2.3   0.0       2.4   1.4e+02      26      37 ..     426     437 ..     416     439 .. 0.86
   4 ?    4.0   5.0     0.029       1.8     703     771 ..     624     691 ..     582     765 .. 0.51

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 8e-05
  TIGR02168 27 giVGPNGcGKSNivDAi 43
               g +GPNGcGKS ++ Ai
  MMETSP1137-20121227|696_1 36 GLIGPNGCGKSTVMHAI 52
               89************998 PP

  == domain 2    score: -1.8 bits;  conditional E-value: 1.6
  TIGR02168 876 eleellkekasleealaelr 895
                +lee +ke+++++++l+elr
  MMETSP1137-20121227|696_1 300 KLEEYNKEYERQQKKLKELR 319
                22222222222222222222 PP

  == domain 3    score: -2.3 bits;  conditional E-value: 2.4
  TIGR02168  26 tgiVGPNGcGKS 37 
                ++ VG NG GKS
  MMETSP1137-20121227|696_1 426 VALVGANGTGKS 437
                89*********9 PP

  == domain 4    score: 4.0 bits;  conditional E-value: 0.029
  TIGR02168 703 kelekeleeleeeleklrkeleelerklselkkelerlekeveqleerlaqlekeleeleeereeleee 771
                 e++k+ +e + +++ l++e   le + s+ k++++r++++ e+ e++ a++e+e++e e+  ++++e+
  MMETSP1137-20121227|696_1 624 PEVKKRERERA-AAAALKAEDAALEADPSKPKSKAQRERERKEAREAKSAREEAERAEKEAAAKAAAEA 691
                11111111111.111222222222222222222222222222222222222222222222222222211 PP

>> TIGR00611  recf: DNA replication and repair protein RecF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   0.0     0.022       1.3      23      46 ..      32      55 ..      22     111 .. 0.64
   2 ?    0.3   0.0       1.1        66     138     246 ..     240     353 ..     237     382 .. 0.60
   3 ?    2.6   0.0      0.21        13      25      41 ..     425     441 ..     406     452 .. 0.77

  Alignments for each domain:
  == domain 1    score: 5.9 bits;  conditional E-value: 0.022
  TIGR00611 23 pgvnvlvGeNgqGKtnlleaiyyl 46
                ++  l+G+Ng GK  ++ ai + 
  MMETSP1137-20121227|696_1 32 GRRYGLIGPNGCGKSTVMHAIGTG 55
               444479**************9864 PP

  == domain 2    score: 0.3 bits;  conditional E-value: 1.1
  TIGR00611 138 DlelfqveprflsalseyqrvLkqRnalLkqaqrkkgdrktLevwdkeLaelgakvvakRaelieklepeaekayqlllpeleslsleyrs...........ekeekeeeyaeaLaknre 246
                Dl  +   + +l+++++   v++    +L ++       + L+ w ++L++++ +       ++ kle+  ++ y++  ++l++l+   +            +  ++++++a++L kn +
  MMETSP1137-20121227|696_1 240 DLHAVIWLEGYLQKWKHTLVVVSHDRDFLTTVC-----TDILHCWRSKLVHYAGNYEVFEKVFASKLEEYNKE-YERQQKKLKELRRAGKVskdlgkkdggaDSVAYKKQMAQVLGKNSK 353
                555555556666666666666666666666664.....37899999999999988888888888888765444.3333333333332222223355544433366666666666666655 PP

  == domain 3    score: 2.6 bits;  conditional E-value: 0.21
  TIGR00611  25 vnvlvGeNgqGKtnlle 41 
                + +lvG Ng GK  ll+
  MMETSP1137-20121227|696_1 425 RVALVGANGTGKSTLLK 441
                3379********99986 PP

>> TIGR03499  FlhF: flagellar biosynthesis protein FlhF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.0      0.64        39     198     213 ..      32      47 ..      21      52 .. 0.85
   2 ?    2.3   0.0      0.49        29     200     213 ..     425     438 ..     410     443 .. 0.83
   3 ?    4.6   5.2     0.098       5.9      59     111 ..     644     690 ..     593     776 .. 0.52

  Alignments for each domain:
  == domain 1    score: 1.9 bits;  conditional E-value: 0.64
  TIGR03499 198 ggviaLvGptGvGKTT 213
                g+ + L+Gp G GK T
  MMETSP1137-20121227|696_1  32 GRRYGLIGPNGCGKST 47 
                56789*********99 PP

  == domain 2    score: 2.3 bits;  conditional E-value: 0.49
  TIGR03499 200 viaLvGptGvGKTT 213
                 +aLvG  G GK T
  MMETSP1137-20121227|696_1 425 RVALVGANGTGKST 438
                58**********98 PP

  == domain 3    score: 4.6 bits;  conditional E-value: 0.098
  TIGR03499  59 aaseeeeakkaleeaepkklskaeekeekekeaeekaaeaaqeaekkleeae...e 111
                aa e++++k++ ++++++++++a+e++++++eae++++eaa+         +   e
  MMETSP1137-20121227|696_1 644 AALEADPSKPKSKAQRERERKEAREAKSAREEAERAEKEAAA---------KaaaE 690
                111111111111111111111111111111111111111111.........01121 PP

>> TIGR00507  aroE: shikimate 5-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   0.0    0.0088      0.53     163     236 ..      41     113 ..      33     125 .. 0.77
   2 ?    1.8   0.0      0.38        23     114     137 ..     420     443 ..     412     448 .. 0.87

  Alignments for each domain:
  == domain 1    score: 7.2 bits;  conditional E-value: 0.0088
  TIGR00507 163 lgeilalsleevelkkvdliinatsaglsgeideaevkael.lkegklvvDlvynpletpllkeakkkgtkvidG 236
                +g+ ++  ++ +   +v+ i na+++g+ + + e+ev+a+  +++  l + +      t+ll+eak++++   +G
  MMETSP1137-20121227|696_1  41 NGCGKSTVMHAIGTGEVEEIRNAIPPGMDILLVEQEVQASDeITA--LQMVVSADTRRTALLAEAKELEKTLEEG 113
                6777777888888899999*************9999987641333..333345556689*********9988877 PP

  == domain 2    score: 1.8 bits;  conditional E-value: 0.38
  TIGR00507 114 lksekrvliiGAGGaakavaleLl 137
                l+ + rv+++GA G +k+ +l+L+
  MMETSP1137-20121227|696_1 420 LNMDSRVALVGANGTGKSTLLKLM 443
                566889***************997 PP

>> TIGR00152  TIGR00152: dephospho-CoA kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   0.0      0.17        10       3      19 ..      36      52 ..      35      61 .. 0.89
   2 ?    6.2   0.0      0.03       1.8       2      19 ..     426     443 ..     425     449 .. 0.88

  Alignments for each domain:
  == domain 1    score: 3.8 bits;  conditional E-value: 0.17
  TIGR00152  3 gltGgigsGKstvakil 19
               gl+G  g+GKstv++++
  MMETSP1137-20121227|696_1 36 GLIGPNGCGKSTVMHAI 52
               899**********9987 PP

  == domain 2    score: 6.2 bits;  conditional E-value: 0.03
  TIGR00152   2 igltGgigsGKstvakil 19 
                ++l+G  g+GKst++k++
  MMETSP1137-20121227|696_1 426 VALVGANGTGKSTLLKLM 443
                89************9986 PP

>> TIGR00929  VirB4_CagE: type IV secretion/conjugal transfer ATPase, VirB4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0       3.7   2.2e+02     442     455 ..      37      50 ..      36      52 .. 0.88
   2 ?    8.0   0.0    0.0025      0.15     428     461 ..     404     447 ..     401     453 .. 0.82

  Alignments for each domain:
  == domain 1    score: -2.5 bits;  conditional E-value: 3.7
  TIGR00929 442 IfGptgsGKTvlln 455
                ++Gp+g GK++ + 
  MMETSP1137-20121227|696_1  37 LIGPNGCGKSTVMH 50 
                59*********996 PP

  == domain 2    score: 8.0 bits;  conditional E-value: 0.0025
  TIGR00929 428 fHvrdake..........vlGhTlIfGptgsGKTvllnfllaql 461
                fH ++++           +   ++++G++g+GK++ll+++l++l
  MMETSP1137-20121227|696_1 404 FHYENQEDlftdvdfglnMDSRVALVGANGTGKSTLLKLMLSEL 447
                777776557777777777888899***************99987 PP

>> TIGR01554  major_cap_HK97: phage major capsid protein, HK97 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   1.3       0.3        18      37      97 ..     297     355 ..     289     372 .. 0.74
   2 ?    5.9  11.3     0.021       1.3      18     129 ..     627     735 ..     603     739 .. 0.54

  Alignments for each domain:
  == domain 1    score: 2.1 bits;  conditional E-value: 0.3
  TIGR01554  37 lkaeidkleaeierleeaaaeeeakeaasgeagkeeeeeeeakeeaaeafraylrrgddal 97 
                  +++++ ++e er++++++e+ ++++ s++ gk+   ++  + +++  + + l ++ +  
  MMETSP1137-20121227|696_1 297 FASKLEEYNKEYERQQKKLKELRRAGKVSKDLGKKDGGADSVAYKKQ--MAQVLGKNSKGK 355
                56899*************99999999999999999888887766666..555444444433 PP

  == domain 2    score: 5.9 bits;  conditional E-value: 0.021
  TIGR01554  18 ltedekeeeaeeekkekdalkaeidkleaeierleeaaaeeeakeaasgeagkeeeeeeeakeeaaeafraylrrgddalaeeakalstgtdsdgGylvPeelsteIiellk 129
                ++ + ++++a++ k+e++al+a+  k +++ +r++e+++++eak a++  +++e+e++++a++eaa+   a+++rg     +   + s+g + + G+++P+  s  +  +++
  MMETSP1137-20121227|696_1 627 KKRERERAAAAALKAEDAALEADPSKPKSKAQRERERKEAREAKSAREEAERAEKEAAAKAAAEAAA-AAAAAKRGSVVPPAS--GTSSGAAGADGAAAPPASSPAVESRVT 735
                2222333333333444444555555555555555555555555555555555555555555555544.555666666666655..888888889999999988777777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (861 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       368  (0.0897123); expected 82.0 (0.02)
Passed bias filter:                      207  (0.0504632); expected 82.0 (0.02)
Passed Vit filter:                        98  (0.0238908); expected 4.1 (0.001)
Passed Fwd filter:                        71  (0.0173086); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              68  [number of targets reported over threshold]
# CPU time: 2.20u 0.21s 00:00:02.41 Elapsed: 00:00:02.16
# Mc/sec: 526.12
//
Query:       MMETSP1137-20121227|697_1  [L=277]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (277 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        61  (0.0148708); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.14s 00:00:00.36 Elapsed: 00:00:00.36
# Mc/sec: 1015.58
//
Query:       MMETSP1137-20121227|698_1  [L=394]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (394 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        69  (0.0168211); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.13s 00:00:00.40 Elapsed: 00:00:00.40
# Mc/sec: 1300.09
//
Query:       MMETSP1137-20121227|700_1  [L=235]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (235 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        40  (0.00975134); expected 82.0 (0.02)
Passed bias filter:                       36  (0.00877621); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.16s 00:00:00.36 Elapsed: 00:00:00.26
# Mc/sec: 1192.98
//
Query:       MMETSP1137-20121227|701_1  [L=484]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (484 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       107  (0.0260848); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.16s 00:00:00.51 Elapsed: 00:00:00.57
# Mc/sec: 1101.43
//
Query:       MMETSP1137-20121227|703_1  [L=316]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.038   11.9   1.6       0.86    7.6   0.2    2.6  2  TIGR00810 secG: preprotein translocase, SecG subunit


Domain annotation for each model (and alignments):
>> TIGR00810  secG: preprotein translocase, SecG subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.0    0.0059        24       1      19 [.     116     134 ..     116     167 .. 0.85
   2 ?    7.6   0.2   0.00021      0.86      54      69 ..     298     313 ..     273     315 .. 0.83

  Alignments for each domain:
  == domain 1    score: 2.9 bits;  conditional E-value: 0.0059
  TIGR00810   1 ytvllilliivavlLivlv 19 
                yt+l + l +vav+Livlv
  MMETSP1137-20121227|703_1 116 YTALAVGLPFVAVVLIVLV 134
                5777788889999999998 PP

  == domain 2    score: 7.6 bits;  conditional E-value: 0.00021
  TIGR00810  54 lTavlavlFfilslal 69 
                lTa+l++lF+  +l+l
  MMETSP1137-20121227|703_1 298 LTAILVILFITACLIL 313
                89************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (316 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       160  (0.0390054); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.25u 0.13s 00:00:00.38 Elapsed: 00:00:00.37
# Mc/sec: 1127.26
//
Query:       MMETSP1137-20121227|704_1  [L=192]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (192 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        74  (0.01804); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.18s 00:00:00.37 Elapsed: 00:00:00.32
# Mc/sec: 791.93
//
Query:       MMETSP1137-20121227|705_1  [L=124]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (124 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        56  (0.0136519); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.14s 00:00:00.31 Elapsed: 00:00:00.31
# Mc/sec: 527.96
//
Query:       MMETSP1137-20121227|706_1  [L=477]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (477 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        66  (0.0160897); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.15s 00:00:00.49 Elapsed: 00:00:00.44
# Mc/sec: 1430.88
//
Query:       MMETSP1137-20121227|707_1  [L=390]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (390 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        69  (0.0168211); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.16s 00:00:00.44 Elapsed: 00:00:00.35
# Mc/sec: 1470.74
//
Query:       MMETSP1137-20121227|708_1  [L=56]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        48  (0.0117016); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.16s 00:00:00.27 Elapsed: 00:00:00.27
# Mc/sec: 273.76
//
Query:       MMETSP1137-20121227|709_1  [L=244]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (244 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        85  (0.0207216); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.14s 00:00:00.36 Elapsed: 00:00:01.13
# Mc/sec: 282.50
//
Query:       MMETSP1137-20121227|710_1  [L=280]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.8e-87  292.4   0.0    2.3e-87  292.1   0.0    1.1  1  TIGR00763 lon: ATP-dependent protease La
    3.2e-20   70.1   0.0      8e-20   68.8   0.0    1.5  2  TIGR00764 lon_rel: putative ATP-dependent protease
    1.8e-19   67.5   0.0      4e-19   66.4   0.0    1.7  1  TIGR02903 spore_lon_C: ATP-dependent protease, Lon family
    1.9e-18   64.2   0.0    2.6e-18   63.7   0.0    1.3  1  TIGR02902 spore_lonB: ATP-dependent protease LonB
    1.5e-10   37.9   0.0    1.9e-10   37.5   0.0    1.0  1  TIGR02653 Lon_rel_chp: conserved hypothetical protein
    3.7e-06   23.7   0.0    5.6e-06   23.2   0.0    1.2  1  TIGR00416 sms: DNA repair protein RadA
    2.2e-05   21.1   0.0      3e-05   20.6   0.0    1.1  1  TIGR00368 TIGR00368: Mg chelatase-like protein


Domain annotation for each model (and alignments):
>> TIGR00763  lon: ATP-dependent protease La
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  292.1   0.0   3.9e-90   2.3e-87     573     795 .]      26     271 ..       4     271 .. 0.91

  Alignments for each domain:
  == domain 1    score: 292.1 bits;  conditional E-value: 3.9e-90
  TIGR00763 573 eaeeekeeaelkkeekesveideenlkkylgkpvfesekldeetkvGvvmGLawtsvGGsvlyiEttlveg.......................kkgeleltGqLgdvmkESaqialtyvraileekeienkffekadihlHvPeGatpKDGPSAGvtlvtallSllldkkvrkdvamtGEltLtGkvlpigglkeKviaAkrsgiktiilPeknrrdleelpenvkedleillvkeleevlekaf 795
                +  ++++ a  ++++  +v+i e++l++y+gkp+f+s++++ +++vGvv+GLawts+GG vlyiEt                            ++ +++ tGq+gdvm+ES+qia+t++r++l ++++en+f+e++ +h+HvPeGatpKDGPSAG+t+vt++lSl++d + r+d+amtGEltLtG+vl igg++eK+iaA+rsg+++ii+P++n+rd+ elp+n+++++++++++++++v++ af
  MMETSP1137-20121227|710_1  26 ADASTADTAAAEQHAFDKVIIGEDQLSDYVGKPIFTSDRIYATNPVGVVTGLAWTSMGGAVLYIETQPAGRfvkrdkkggkgdgsegegdskggGSATVRSTGQMGDVMRESSQIAHTFARSYLYKLQPENDFLETTPLHVHVPEGATPKDGPSAGITMVTSFLSLAMDMPPRSDLAMTGELTLTGRVLAIGGVREKLIAARRSGVQHIIFPKANERDYTELPQNLRDGVQVYFAQDYDDVFRIAF 271
                233445556677888899************************************************877667777899************8776677899**********************************************************************************************************************************************9987 PP

>> TIGR00764  lon_rel: putative ATP-dependent protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0      0.36   2.1e+02     554     568 ..      41      55 ..      28     103 .. 0.54
   2 !   68.8   0.0   1.4e-22     8e-20     452     597 ..     123     275 ..     112     279 .. 0.88

  Alignments for each domain:
  == domain 1    score: -2.0 bits;  conditional E-value: 0.36
  TIGR00764 554 ikkviiPksnekdvl 568
                + kvii ++  +d +
  MMETSP1137-20121227|710_1  41 FDKVIIGEDQLSDYV 55 
                445555444444432 PP

  == domain 2    score: 68.8 bits;  conditional E-value: 1.4e-22
  TIGR00764 452 kiivtgklgeiakeavlnvsalikkykge......diskkdihiqflqtyegveGdsasisvatavisaleeiPvkqdvaltGslsvrGevlpvGGvtekieaaieaGikkviiPksnekdvl.lekekekkieiiPverldevlevalvese 597
                ++  tg++g++ +e+ + + ++ + y  +       ++ + +h+   +     +G sa i+++t+ +s   ++P + d+a+tG l + G vl++GGv ek+ aa + G++++i Pk+ne+d   l ++ ++ +++   +  d+v+ +a+ + +
  MMETSP1137-20121227|710_1 123 TVRSTGQMGDVMRESSQIAHTFARSYLYKlqpendFLETTPLHVHVPEGATPKDGPSAGITMVTSFLSLAMDMPPRSDLAMTGELTLTGRVLAIGGVREKLIAARRSGVQHIIFPKANERDYTeLPQNLRDGVQVYFAQDYDDVFRIAFPQAD 275
                34469**********999998888887666677744778899*******************************************************************************86477889999************999997765 PP

>> TIGR02903  spore_lon_C: ATP-dependent protease, Lon family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.4   0.0   6.8e-22     4e-19     472     615 .]     117     271 ..      11     271 .. 0.84

  Alignments for each domain:
  == domain 1    score: 66.4 bits;  conditional E-value: 6.8e-22
  TIGR02903 472 kekGkGtvrfndtaGsmakdsvfn....aasvirkit.dkd.lkdydihvnviGGG.ridGpsaGaaitlvilsalldkpirqdvaitGeislrGkikpvGGifekiyGakrkgiktvvipeenlkd...vpqgl.kdievkavktieelleivl 615
                k  G  tvr     G + ++s       a s + k+  ++d l+   +hv v  G    dGpsaG +++  +ls  +d p r d+a+tGe++l G++ ++GG+ ek+  a+r g+++++ p+ n +d    pq+l ++++v ++++ +++++i++
  MMETSP1137-20121227|710_1 117 KGGGSATVRSTGQMGDVMRESSQIahtfARSYLYKLQpENDfLETTPLHVHVPEGAtPKDGPSAGITMVTSFLSLAMDMPPRSDLAMTGELTLTGRVLAIGGVREKLIAARRSGVQHIIFPKANERDyteLPQNLrDGVQVYFAQDYDDVFRIAF 271
                555666777777777776666544011134445555423343456679**998665168*****************************************************************997444799983569*********9999975 PP

>> TIGR02902  spore_lonB: ATP-dependent protease LonB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.7   0.0   4.5e-21   2.6e-18     422     510 ..     157     246 ..      51     271 .. 0.66

  Alignments for each domain:
  == domain 1    score: 63.7 bits;  conditional E-value: 4.5e-21
  TIGR02902 422 inlkdydihinfp.ggipvdGpsaGvaiavaiysalkkvpidnkvaltGeislnGlvkpvGGvsskieaakkaGakkviipkenyqevle 510
                  l+   +h++ p g++p dGpsaG++++ +  s  + +p  +  a+tGe++l+G v ++GGv +k+ aa+++G++++i pk n ++ +e
  MMETSP1137-20121227|710_1 157 DFLETTPLHVHVPeGATPKDGPSAGITMVTSFLSLAMDMPPRSDLAMTGELTLTGRVLAIGGVREKLIAARRSGVQHIIFPKANERDYTE 246
                334455678887626689****************************************************************99877654 PP

>> TIGR02653  Lon_rel_chp: conserved hypothetical protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.5   0.0   3.3e-13   1.9e-10     521     666 ..     118     265 ..     111     271 .. 0.88

  Alignments for each domain:
  == domain 1    score: 37.5 bits;  conditional E-value: 3.3e-13
  TIGR02653 521 GsGklkvsGlGs.etaakesikvafdylkgnlkrisasakf.sekdyhlevvdllntgvsteaslaalialisallkrsvqeqmvilGeltlgGvvkavedlaeslqlaldsGakrvllplssasdiatvpaelfskfqisfysdpvd 666
                G G   v  +G     ++es + a  + ++ l ++     f +++  h++v +  + + +  a+++++ +++s +++ + + ++++ Geltl G v a+  + e+l  a  sG +++++p ++++d++++p +l + +q+ f +d  d
  MMETSP1137-20121227|710_1 118 GGGSATVRSTGQmGDVMRESSQIAHTFARSYLYKLQPENDFlETTPLHVHVPEGATPKDGPSAGITMVTSFLSLAMDMPPRSDLAMTGELTLTGRVLAIGGVREKLIAARRSGVQHIIFPKANERDYTELPQNLRDGVQVYFAQDYDD 265
                555555555554145799****************998776626788*********************************************************************************************988777544 PP

>> TIGR00416  sms: DNA repair protein RadA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.2   0.0   9.5e-09   5.6e-06     369     436 ..     176     243 ..     158     265 .. 0.87

  Alignments for each domain:
  == domain 1    score: 23.2 bits;  conditional E-value: 9.5e-09
  TIGR00416 369 eepavdlalvialvssfrdrkldqklvilGevglaGeirevssleerlkeaaklGfkkaivPkansdk 436
                + p++ +++v +++s   d +   +l++ Ge++l+G+++ +  ++e+l  a + G +++i Pkan  +
  MMETSP1137-20121227|710_1 176 DGPSAGITMVTSFLSLAMDMPPRSDLAMTGELTLTGRVLAIGGVREKLIAARRSGVQHIIFPKANERD 243
                679999**********************************************************9864 PP

>> TIGR00368  TIGR00368: Mg chelatase-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   0.0   5.1e-08     3e-05      95     162 ..     197     269 ..     166     275 .. 0.78

  Alignments for each domain:
  == domain 1    score: 20.6 bits;  conditional E-value: 5.1e-08
  TIGR00368  95 kldeylllgelaldGklravkgvlpaiaaakkselkfiivakenaee.....aslvdglnvyivddlkevvkf 162
                  +++ + gel+l+G++ a+ gv   ++aa++s+++ ii +k n+ +       l dg +vy+++d  +v ++
  MMETSP1137-20121227|710_1 197 PRSDLAMTGELTLTGRVLAIGGVREKLIAARRSGVQHIIFPKANERDytelpQNLRDGVQVYFAQDYDDVFRI 269
                4467899*************************************987222224688999******99999765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (280 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       127  (0.0309605); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.34u 0.17s 00:00:00.51 Elapsed: 00:00:00.33
# Mc/sec: 1119.91
//
Query:       MMETSP1137-20121227|711_1  [L=120]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (120 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        36  (0.00877621); expected 82.0 (0.02)
Passed bias filter:                       29  (0.00706972); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.14s 00:00:00.29 Elapsed: 00:00:00.26
# Mc/sec: 609.18
//
Query:       MMETSP1137-20121227|712_1  [L=558]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (558 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        52  (0.0126767); expected 82.0 (0.02)
Passed bias filter:                       39  (0.00950756); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.13s 00:00:00.48 Elapsed: 00:00:00.48
# Mc/sec: 1534.37
//
Query:       MMETSP1137-20121227|713_1  [L=428]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.9e-21   73.7   0.0    2.9e-21   73.7   0.0    1.7  2  TIGR01645 half-pint: poly-U binding splicing factor, half-pint family
    2.7e-12   43.8   0.0    3.9e-12   43.2   0.0    1.2  1  TIGR01642 U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor
    5.9e-10   36.6   0.0    9.4e-10   35.9   0.0    1.2  1  TIGR01622 SF-CC1: splicing factor, CC1-like family


Domain annotation for each model (and alignments):
>> TIGR01645  half-pint: poly-U binding splicing factor, half-pint family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -5.9   2.5       2.7   3.6e+03     325     350 ..      49      64 ..       9     104 .. 0.39
   2 !   73.7   0.0   2.2e-24   2.9e-21     506     603 ..     276     374 ..     272     378 .. 0.83

  Alignments for each domain:
  == domain 1    score: -5.9 bits;  conditional E-value: 2.7
  TIGR01645 325 qspatassslvtdieakavvssakke 350
                ++ ++a   l+ +            +
  MMETSP1137-20121227|713_1  49 NTKVMAPPVLSKKA----------AT 64 
                22222222222221..........11 PP

  == domain 2    score: 73.7 bits;  conditional E-value: 2.2e-24
  TIGR01645 506 rknesrvivlrnmvtPkdidetlegeireecgkfgvvdrviiyqekqgeeedaeilvkifvefsasaevdrakealdGrffgGrkvvaev.dqelfdqa 603
                r + srv++l+nmv P d+d +l+gei eec+k+g v  v ++          e  v+ifv+f + a +++a   ldGr+fgGr+v       + fd +
  MMETSP1137-20121227|713_1 276 RGRPSRVLLLKNMVAPADVDAELRGEIGEECSKYGEVVEVTVHLMGADSGLSDEESVRIFVKFGKQAAAMKAYIDLDGRYFGGRQVWVCFyREQDFDSG 374
                7788*****************************998877776655444445566789****************************97655445556665 PP

>> TIGR01642  U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.2   0.0   2.9e-15   3.9e-12     403     510 .]     273     376 ..     261     376 .. 0.87

  Alignments for each domain:
  == domain 1    score: 43.2 bits;  conditional E-value: 2.9e-15
  TIGR01642 403 lqiGekptkvvqLtnlvlaedllddeeYeeiledvkeeaskyGtlkniviPrpnkdr.seteGvGKvFleyadvasaekAreelnGrkFekrvvvaafysedkykkgdy 510
                +   ++p++v+ L+n+v + d+      +e+  ++ ee+skyG+++++ +     d   + e   ++F+++   a a kA   l+Gr F++r+v + fy e+ +  g++
  MMETSP1137-20121227|713_1 273 VTFRGRPSRVLLLKNMVAPADVD-----AELRGEIGEECSKYGEVVEVTVHLMGADSgLSDEESVRIFVKFGKQAAAMKAYIDLDGRYFGGRQVWVCFYREQDFDSGNF 376
                566799*************9973.....578889999************9987666514566778***************************************99876 PP

>> TIGR01622  SF-CC1: splicing factor, CC1-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.9   0.0   6.9e-13   9.4e-10     401     490 ..     276     368 ..     265     376 .. 0.79

  Alignments for each domain:
  == domain 1    score: 35.9 bits;  conditional E-value: 6.9e-13
  TIGR01622 401 vnlaseclvLsNmFdpateeeenfdkeikdDvkeEcskkggvvhiyvdkknsaG........kvYlkfdsveaalaavkalngRyFagklitAafvvk 490
                 + +s+ l+L+Nm  pa     + d e++ ++ eEcsk+g+vv++ v    ++          +++kf + +aa++a   l+gRyF+g+ +   f  +
  MMETSP1137-20121227|713_1 276 RGRPSRVLLLKNMVAPA-----DVDAELRGEIGEECSKYGEVVEVTVHLMGADSglsdeesvRIFVKFGKQAAAMKAYIDLDGRYFGGRQVWVCFYRE 368
                56799**********97.....6789****************998875433321122222228*************************9887766655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (428 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       138  (0.0336421); expected 82.0 (0.02)
Passed bias filter:                      123  (0.0299854); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.37u 0.15s 00:00:00.52 Elapsed: 00:00:00.42
# Mc/sec: 1345.03
//
Query:       MMETSP1137-20121227|714_1  [L=428]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.9e-54  180.2   0.3    1.4e-53  179.7   0.2    1.2  1  TIGR01198 pgl: 6-phosphogluconolactonase


Domain annotation for each model (and alignments):
>> TIGR01198  pgl: 6-phosphogluconolactonase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  179.7   0.2   3.4e-57   1.4e-53       3     233 ..     179     410 ..     177     411 .. 0.87

  Alignments for each domain:
  == domain 1    score: 179.7 bits;  conditional E-value: 3.4e-57
  TIGR01198   3 sesaelaealaervatklekalaekgqallalsGGrspialleaLaaq......kldWsrihlflgDERivplddadsntkllrealLdrvaipasnihlvptelsedveeaa.ekyeqelaaakqpe.evpsfDlllLGmGpDgHtaSLFPetpalqeteklvvvltkspkppheRitltlpvlnaakkvlllvaGeeKaavlaeilkveaeelslpaalvlgsekllwlldeaaaek 233
                 +++ + +++ e + ++ ++a++e+g +++alsGG+ ++ l+ aL+a+      ++++ r+h+f +DER+v ++d+ sn+++ r+alLd+v  ++   ++ +++     ee+   +    +aa ++ + ++p++D ++LGmG+DgHtaSLFP +  l+e    v+ +++spkpp+ R+tltlp+ln+a+  l++vaG++Kaa+++e++     e ++pa lv+ ++++ wlld aaa++
  MMETSP1137-20121227|714_1 179 DHRELMGASACELLMEASARAIRERGAFTVALSGGSVVQLLAPALVAAsadaarNVQFTRWHVFVADERLVAESDERSNMGAWRAALLDHVVETSL--PPADAAR--RYEETLlRVLSGFVAADADATaSLPALDAVVLGMGDDGHTASLFPSHALLDEVFAAVAPIEDSPKPPSARVTLTLPLLNRARLALFIVAGASKAAAVKEAFG---PEPEAPAGLVVAAQRTHWLLDVAAAAE 410
                66788899999**********************************9999999**************************************987664..4444444..233333033333333322222589******************************************************************************...566689****************99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (428 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       127  (0.0309605); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.31u 0.16s 00:00:00.47 Elapsed: 00:00:00.35
# Mc/sec: 1614.04
//
Query:       MMETSP1137-20121227|715_1  [L=99]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.7e-27   91.2   0.0    1.1e-26   91.1   0.0    1.0  1  TIGR00605 rad4: DNA repair protein rad4
  ------ inclusion threshold ------
       0.02   11.8   0.0      0.021   11.6   0.0    1.1  1  TIGR00774 NhaB: Na+/H+ antiporter NhaB


Domain annotation for each model (and alignments):
>> TIGR00605  rad4: DNA repair protein rad4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.1   0.0   5.2e-30   1.1e-26     951    1046 ..       2      97 ..       1      98 [. 0.98

  Alignments for each domain:
  == domain 1    score: 91.1 bits;  conditional E-value: 5.2e-30
  TIGR00605  951 avhlrlpgllriakkLnidcanAvvgFdFhrgaskPvldGiiVceefrdvvtaaweedqqvqvekeqekkekrvlgnWkkLikgLlIRerlkkkYg 1046
                 + hlr+p ++++akkL+idc++A vgFd + g+s P +dG++Vce ++  + +a+   q+  ++k+ +k ++ vl nW+ L++ L IR rl   Yg
  MMETSP1137-20121227|715_1    2 TTHLRQPHVAAVAKKLGIDCVPALVGFDIRDGRSVPRFDGVVVCEDVAPLLVEAAASMQEQSEDKQVRKRQREVLANWRGLLRVLAIRARLDADYG 97  
                 79*********************************************************************************************8 PP

>> TIGR00774  NhaB: Na+/H+ antiporter NhaB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0     1e-05     0.021     177     213 ..      59      95 ..      47      99 .] 0.85

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 1e-05
  TIGR00774 177 dvdltdddkiteltkevlekfraflrsllmhagvgta 213
                 +++++d+++ ++++evl ++r++lr l + a + + 
  MMETSP1137-20121227|715_1  59 MQEQSEDKQVRKRQREVLANWRGLLRVLAIRARLDAD 95 
                467899**********************999977655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (99 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       150  (0.0365675); expected 82.0 (0.02)
Passed bias filter:                      142  (0.0346173); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.17u 0.17s 00:00:00.34 Elapsed: 00:00:00.27
# Mc/sec: 483.96
//
Query:       MMETSP1137-20121227|717_1  [L=80]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (80 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        38  (0.00926377); expected 82.0 (0.02)
Passed bias filter:                       37  (0.00901999); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.15s 00:00:00.29 Elapsed: 00:00:00.28
# Mc/sec: 364.11
//
Query:       MMETSP1137-20121227|718_1  [L=521]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (521 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        73  (0.0177962); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.13s 00:00:00.48 Elapsed: 00:00:00.51
# Mc/sec: 1348.36
//
Query:       MMETSP1137-20121227|719_1  [L=271]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (271 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        85  (0.0207216); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.15s 00:00:00.37 Elapsed: 00:00:00.31
# Mc/sec: 1153.84
//
Query:       MMETSP1137-20121227|720_1  [L=462]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0064   13.8   0.1      0.034   11.4   0.0    1.9  2  TIGR03167 tRNA_sel_U_synt: tRNA 2-selenouridine synthase


Domain annotation for each model (and alignments):
>> TIGR03167  tRNA_sel_U_synt: tRNA 2-selenouridine synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.0     0.026   1.1e+02       3      23 ..     177     197 ..     175     211 .. 0.87
   2 !   11.4   0.0   8.3e-06     0.034      72     120 ..     220     269 ..     203     279 .. 0.74

  Alignments for each domain:
  == domain 1    score: -0.1 bits;  conditional E-value: 0.026
  TIGR03167   3 kpliDvRspaEfaegalpgal 23 
                k+++DvR   E++ g+++ga 
  MMETSP1137-20121227|720_1 177 KVILDVRNGYEWDLGRFEGAE 197
                679***************995 PP

  == domain 2    score: 11.4 bits;  conditional E-value: 8.3e-06
  TIGR03167  72 ekeke.vllyCwRGGlRSksl.awllkeagl.evlrleGGYKayRrlvldel 120
                +ke+  v++yC  GG R +++ a l+ ++g+ +v++l+GG + y ++  ++ 
  MMETSP1137-20121227|720_1 220 DKEETpVMMYCT-GGIRCEIFsAKLK-ASGFkHVYKLQGGVQHYGNTFAAKQ 269
                333335999**7.********77777.67762689******99988776664 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (462 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        88  (0.0214529); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.32u 0.17s 00:00:00.49 Elapsed: 00:00:00.62
# Mc/sec: 983.53
//
Query:       MMETSP1137-20121227|721_1  [L=324]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.6e-21   73.6   0.2    7.9e-21   72.5   0.1    1.4  1  TIGR01832 kduD: 2-deoxy-D-gluconate 3-dehydrogenase
    1.4e-18   65.2   0.9    1.8e-18   64.8   0.6    1.1  1  TIGR03971 SDR_subfam_1: oxidoreductase, SDR family
    1.6e-18   65.1   0.0    2.3e-18   64.6   0.0    1.2  1  TIGR01830 3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase
    2.5e-16   57.7   0.1    3.2e-16   57.3   0.1    1.2  1  TIGR02415 23BDH: acetoin reductases
    2.7e-16   57.4   0.3      4e-16   56.9   0.2    1.2  1  TIGR01963 PHB_DH: 3-hydroxybutyrate dehydrogenase
    8.6e-16   55.2   0.4    1.1e-15   54.9   0.3    1.0  1  TIGR02632 RhaD_aldol-ADH: rhamnulose-1-phosphate aldolase/alcohol dehydrogenase
    5.8e-14   50.2   0.1    8.2e-14   49.7   0.1    1.2  1  TIGR01829 AcAcCoA_reduct: acetoacetyl-CoA reductase
    7.3e-09   33.2   1.1    1.1e-08   32.6   0.8    1.2  1  TIGR01831 fabG_rel: putative 3-oxoacyl-(acyl-carrier-protein) reductase
    2.2e-07   28.3   3.6    4.8e-07   27.2   2.5    1.7  1  TIGR03206 benzo_BadH: 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase
    1.2e-06   25.7   0.8    2.5e-06   24.6   0.6    1.4  1  TIGR02685 pter_reduc_Leis: pteridine reductase
     0.0025   15.1   0.2     0.0046   14.2   0.1    1.4  1  TIGR01500 sepiapter_red: sepiapterin reductase
     0.0055   14.1   0.1      0.012   13.0   0.0    1.5  2  TIGR01289 LPOR: light-dependent protochlorophyllide reductase


Domain annotation for each model (and alignments):
>> TIGR01832  kduD: 2-deoxy-D-gluconate 3-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.5   0.1   2.3e-23   7.9e-21       6     197 ..      12     224 ..      10     231 .. 0.80

  Alignments for each domain:
  == domain 1    score: 72.5 bits;  conditional E-value: 2.3e-23
  TIGR01832   6 kvalvtGantGlGqgiavglaeaGadivgvgise...lse.........tqekvealGrkflslkadladeeaakalvdeaveeagkidilvnnaGiir....redavefsekdwddvlnvnlkavfllsqavakkllkqGrkgkii..niasllsfqGGir...vpsytasksavaGltkllanewakkginvnaiaPGyletnntealrad 197
                +valvtGa++G+G+giav+l +aG  + +vg+s+    +e         t+ek++++G + ++l+ d+++ ea+++ ++++ ++ g++d l   a  +     ++   e + + wd+v  v l++v+l++ a+a+ ++ +  k       +  l+s  GG       +y   k av  l+  +++e+ + g+   a+ PG ++t+n  al a 
  MMETSP1137-20121227|721_1  12 RVALVTGASRGIGKGIAVALGRAGFIVYAVGRSSresSEEtgldltieaTAEKITSVGGTGHALRCDISKDEAINEAIAQVSDAEGRLDLLCCSAYTVPsgplKAPFWEQGVEMWDAVNSVGLRSVYLTCCAAAQLMISTAAKKDQAspPLMVLVSSFGGKAytfNVAYGVGKAAVDRLAADMSQELGALGVATCALYPGVVKTENNLALEAA 224
                79*************************99997652222223333333337899******************************************9986222234455666788************************987433322113445555555543111469**************************************9999875 PP

>> TIGR03971  SDR_subfam_1: oxidoreductase, SDR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.8   0.6   5.3e-21   1.8e-18       4     202 ..      12     216 ..      10     232 .. 0.85

  Alignments for each domain:
  == domain 1    score: 64.8 bits;  conditional E-value: 5.3e-21
  TIGR03971   4 kvalitGaarGqGraeavrlaaeGadiiaidlceplsdvvtypaatredldetaklvealGrkvlarkadvrkleelravveegveefGrldvvvanaGvlsyg....rafelseeqWdtvldvnlkGvWktvkavvPalie...rknGGs..iiivssvaglkalpglahyaaakhGlvgltktlanelaeygirvnsihPtsvdta 202
                +val+tGa+rG G+  av+l + G  + a+   +  s   +  ++ +  ++ ta+ + ++G    a ++d+ k e++++++++  +  Grld+++  a  +  g    + +e   e Wd v  v l+ v+ t+ a+   +i    +k+  s  ++++ s+ g ka  +++ y + k  +  l+  +++el+  g+   ++ P  v+t+
  MMETSP1137-20121227|721_1  12 RVALVTGASRGIGKGIAVALGRAGFIVYAVGRSSRES---SEETGLDLTIEATAEKITSVGGTGHALRCDISKDEAINEAIAQVSDAEGRLDLLCCSAYTVPSGplkaPFWEQGVEMWDAVNSVGLRSVYLTCCAAAQLMIStaaKKDQASppLMVLVSSFGGKAYTFNVAYGVGKAAVDRLAADMSQELGALGVATCALYPGVVKTE 216
                8*********************998777766555444...445677888999**********************************************999876222257******************************96332233333346666677788******************************************996 PP

>> TIGR01830  3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.6   0.0   6.7e-21   2.3e-18       1     190 [.      14     222 ..      14     258 .. 0.79

  Alignments for each domain:
  == domain 1    score: 64.6 bits;  conditional E-value: 6.7e-21
  TIGR01830   1 alvtGasrgiGkaiakklakegakvviterskeek.........aeelaeelkeagvkaaavkldvsdeeevkelveeveeelgeidilvnnAGitrDk.l...llrmkeedwdevikvnLkgvfnvtkavlkkmi....kkrsGr...iinissvvgllGnagqanYaasKaGligltkslakElasrnitvnavaPGfietdmtekls 190
                alvtGasrgiGk ia +l ++g+ v    rs+ e+         +e++ae++++ g++ +a+++d+s++e+++e++++v+++ g++d+l ++A     + l   + +   e wd+v +v L++v+ ++ a+++ mi    kk + +   ++ +ss  g +  +  + Y   Ka +  l+  +++El++ ++   a+ PG ++t+   +l+
  MMETSP1137-20121227|721_1  14 ALVTGASRGIGKGIAVALGRAGFIVYAVGRSSRESseetgldltIEATAEKITSVGGTGHALRCDISKDEAINEAIAQVSDAEGRLDLLCCSAYTVPSGpLkapFWEQGVEMWDAVNSVGLRSVYLTCCAAAQLMIstaaKKDQASpplMVLVSSFGGKA-YTFNVAYGVGKAAVDRLAADMSQELGALGVATCALYPGVVKTENNLALE 222
                79***********************99887766551111222224567899999**************************************97554431311145666789*********************998332222222233356666655544.445678************************************9766665 PP

>> TIGR02415  23BDH: acetoin reductases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.3   0.1   9.4e-19   3.2e-16       1     188 [.      12     218 ..      12     257 .. 0.83

  Alignments for each domain:
  == domain 1    score: 57.3 bits;  conditional E-value: 9.4e-19
  TIGR02415   1 kvalvtGaaqGiGkaiaerLakdGfavavadln..........eetaketakelkekgtkavavkldvsdkseveeaveqaveklGeldvlvnnaGvalvtpil....eiteeeleklynvnvkgvlfGiqaaaekf.....kklkhkGkiinaasiagvegspelsaysstkfavrgltqtaakeLakkgitvnayaPGivktemr 188
                +valvtGa++GiGk+ia  L + Gf v  +             + t+ +ta+++++ g+   a++ d+s+ ++++ea+ q  +  G ld+l   a   ++ p++    e + e  + + +v + +v+    aaa+ +     kk +    ++  +s  g +++    ay   k av  l+   ++eL + g++  a  PG+vkte  
  MMETSP1137-20121227|721_1  12 RVALVTGASRGIGKGIAVALGRAGFIVYAVGRSsresseetglDLTIEATAEKITSVGGTGHALRCDISKDEAINEAIAQVSDAEGRLDLLCCSAYTVPSGPLKapfwEQGVEMWDAVNSVGLRSVYLTCCAAAQLMistaaKKDQASPPLMVLVSSFGGKAYTFNVAYGVGKAAVDRLAADMSQELGALGVATCALYPGVVKTENN 218
                79***********************99665443344554444445678999********************************************99887665521116777888888899999*****999987551211155555667888889999999******************************************865 PP

>> TIGR01963  PHB_DH: 3-hydroxybutyrate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.9   0.2   1.2e-18     4e-16       1     186 [.      11     216 ..      11     220 .. 0.85

  Alignments for each domain:
  == domain 1    score: 56.9 bits;  conditional E-value: 1.2e-18
  TIGR01963   1 kkvalvtGaasGiglaiakelaaaGakvvvndle..........eeaaeaaakeleeaggevlalkadvtkeeeiadlieavaaefgsldiLvnnAGiqhv....apieefptekfekiiavnltsafhtiraalpim.....kkqgwG.riiniasvhglvasafKsaYvaaKHglvGltKvlAlEvAetgitanaicPgyvrtp 186
                ++valvtGa+ Gig++ia +l +aG+ v  ++ +          + + ea+a+++++ gg+  al+ d++k e+i++ i++v ++ g+ld+L   A         ap  e  +e ++++ +v l s + t  aa   m     kk++    ++ + s  g +a++f  aY   K ++  l+  +  E  + g+ + a+ Pg v+t 
  MMETSP1137-20121227|721_1  11 QRVALVTGASRGIGKGIAVALGRAGFIVYAVGRSsresseetglDLTIEATAEKITSVGGTGHALRCDISKDEAINEAIAQVSDAEGRLDLLCCSAYTVPSgplkAPFWEQGVEMWDAVNSVGLRSVYLTCCAAAQLMistaaKKDQASpPLMVLVSSFGGKAYTFNVAYGVGKAAVDRLAADMSQELGALGVATCALYPGVVKTE 216
                589*************************9998876555543333334678999999**************************************9976554111166678899*****************99998888555543444434677788888999******************************************95 PP

>> TIGR02632  RhaD_aldol-ADH: rhamnulose-1-phosphate aldolase/alcohol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.9   0.3   3.3e-18   1.1e-15     414     600 ..      11     214 ..       6     238 .. 0.82

  Alignments for each domain:
  == domain 1    score: 54.9 bits;  conditional E-value: 3.3e-18
  TIGR02632 414 rrvalvtGgasGiGrevarrlvdeGahvvladl.daeaaeavaaelvdkfGadkava.......lkldvtdeeavkaafaevalayGGvdivvnnaGiavskple....eteleeWdlnldilatGyflvareaarll......rkqglggnlvfiasknavvakknalaysaakaaeahlvrllaielaelgirvntvaPdavl 600
                +rvalvtG++ GiG+ +a+ l   G  v  +     e+ e++  +l+ +  a+k  +       l+ d+ ++ea+++a+a+v+ a G +d++  +a  + s pl+    e+  e Wd    +  +  +l +  aa+l+      + q+ +  +v+++s  +  a   ++ay   kaa   l+  ++ el+ lg+   ++ P  v 
  MMETSP1137-20121227|721_1  11 QRVALVTGASRGIGKGIAVALGRAGFIVYAVGRsSRESSEETGLDLTIEATAEKITSvggtghaLRCDISKDEAINEAIAQVSDAEGRLDLLCCSAYTVPSGPLKapfwEQGVEMWDAVNSVGLRSVYLTCCAAAQLMistaakKDQASPPLMVLVSSFGG-KAYTFNVAYGVGKAAVDRLAADMSQELGALGVATCALYPGVVK 214
                69***********************999877651456677777777666666655555555555********************************9998876661111566899*******************999866666567889999999998876.678889**************************99999997654 PP

>> TIGR01829  AcAcCoA_reduct: acetoacetyl-CoA reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.7   0.1   2.4e-16   8.2e-14       1     191 [.      12     221 ..      12     228 .. 0.73

  Alignments for each domain:
  == domain 1    score: 49.7 bits;  conditional E-value: 2.4e-16
  TIGR01829   1 rvalvtGglgGiGtaickrlakdGykvvanvapneerakew..lqekevegfdv.......avvkadvssfeeakaavakveaelGpvdvlvnnaGitrd....avfkkmtkeqWeevidtnlnsvfnvt....rpviegmler..gfGr.iinissvnGlkGqfGqanysaakaGliGftkalaqegakkgvtvnviaPGyiatemvkav 191
                rvalvtG+++GiG+ i+ +l ++G+ v a  ++ +e+ +e     + e++  ++       + ++ d+s+ e+ ++a+a+v++++G++d+l  +a         a f     e W++v ++ l sv+       + +i++ +++  +    ++ +ss  G k     + y   ka +  ++  ++qe  + gv+  ++ PG ++te   a+
  MMETSP1137-20121227|721_1  12 RVALVTGASRGIGKGIAVALGRAGFIVYAVGRSSRESSEETglDLTIEATAEKItsvggtgHALRCDISKDEAINEAIAQVSDAEGRLDLLCCSAYTVPSgplkAPFWEQGVEMWDAVNSVGLRSVYLTCcaaaQLMISTAAKKdqASPPlMVLVSSF-GGKAYTFNVAYGVGKAAVDRLAADMSQELGALGVATCALYPGVVKTENNLAL 221
                8**************************998877555444431122222222233111112267899*************************99997665411115566778899************96541111445554444411444425666666.5567777899************************************977766 PP

>> TIGR01831  fabG_rel: putative 3-oxoacyl-(acyl-carrier-protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.6   0.8   3.3e-11   1.1e-08       2     186 ..      15     217 ..      14     230 .. 0.75

  Alignments for each domain:
  == domain 1    score: 32.6 bits;  conditional E-value: 3.3e-11
  TIGR01831   2 lvtgasrgigraialklaadgfeiavhyrsdrada.........eesvaairaqggnarllkfdvadrvavrevleadiaehgayygvvlnagiar....daafpalseedwdavietnldgfynvihplvmpmir..arkggr...iitlasvsgvmgnrgqvnysaakagligatkalavelakrkitvnciapglidtem 186
                lvtgasrgig+ ia+ l  +gf +    rs+r ++         e+++++i++ gg+++ l+ d+++ +a+ e++ +  +++g    +  +a         a f     e wdav   +l + y         mi   a+k      ++ l s  g      +v y   ka +   +  ++ el    ++   + pg+++te 
  MMETSP1137-20121227|721_1  15 LVTGASRGIGKGIAVALGRAGFIVYAVGRSSRESSeetgldltiEATAEKITSVGGTGHALRCDISKDEAINEAIAQVSDAEGRLDLLCCSAYTVPsgplKAPFWEQGVEMWDAVNSVGLRSVYLTCCAAAQLMIStaAKKDQAsppLMVLVSSFGGKAYTFNVAYGVGKAAVDRLAADMSQELGALGVATCALYPGVVKTEN 217
                9*********************987666655544311111111256778899**********************9887778887765555554332122256788888899*************9887777777752134432222256666666666778899*********999999********9999999*****9985 PP

>> TIGR03206  benzo_BadH: 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.2   2.5   1.4e-09   4.8e-07       4     114 ..      12     136 ..      10     216 .. 0.74

  Alignments for each domain:
  == domain 1    score: 27.2 bits;  conditional E-value: 1.4e-09
  TIGR03206   4 kvaivtgggggiggaicrrfaeegakv.avldlnaeaae.........kvaaairekggkaeavavditdrasvdaavaaaeealgpvdvlvnnagw....dvlkpflktekaewerliainltg 114
                +va+vtg + gig  i   +++ g  v av   ++e++e           a++i++ gg+ +a+++di++ ++++ a+a + +a g  d+l   a          pf +     w+ + ++ l  
  MMETSP1137-20121227|721_1  12 RVALVTGASRGIGKGIAVALGRAGFIVyAVGRSSRESSEetgldltieATAEKITSVGGTGHALRCDISKDEAINEAIAQVSDAEGRLDLLCCSAYTvpsgPLKAPFWEQGVEMWDAVNSVGLRS 136
                68889999999998888888888876635555556654411111111146999**************************************9887431111233456666666666666666655 PP

>> TIGR02685  pter_reduc_Leis: pteridine reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.6   0.6   7.4e-09   2.5e-06       3     221 ..      13     228 ..      11     241 .. 0.77

  Alignments for each domain:
  == domain 1    score: 24.6 bits;  conditional E-value: 7.4e-09
  TIGR02685   3 aalvtGaakriGrsiavklhqeGyrvvlhyrrsaeaasslaaelnaeransavvvkadlsnsa....sllssceeiidacfrafGrcdvlvnnasafyptpllrgdaeegaaekkslevqvaelfGsnaiaplllikafaqrqkgtraelrssnlsivnlvdamtdqpllgfslytmakealeGltrsaalelaslqirvngvapGlsllpdampeevkeeyr 221
                +alvtGa++ iG+ iav+l + G+ v    r s e++++   +l  e +   ++  +    +     s  ++ +e i     a Gr d+l   a +    pl     e+g+   +++++     +G  ++  +l   a aq +  t a++  ++  ++ lv +   +       y ++k a++ l+   + el +l++   ++ pG+    ++++ e   +++
  MMETSP1137-20121227|721_1  13 VALVTGASRGIGKGIAVALGRAGFIVYAVGRSSRESSEETGLDLTIEATAEKITSVGGTGHALrcdiSKDEAINEAIAQVSDAEGRLDLLCCSAYTVPSGPLKAPFWEQGVEMWDAVNS-----VGLRSV--YLTCCAAAQLMISTAAKKDQASPPLMVLVSSFGGKAYTFNVAYGVGKAAVDRLAADMSQELGALGVATCALYPGVVKTENNLALEAAGKWK 228
                89************************9988888877776666666655555555444333322222244455555666666788*******9999999999998888888776666553.....444443..666667777777777777788888899999999999888889********************************99988888888888776 PP

>> TIGR01500  sepiapter_red: sepiapterin reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.1   1.3e-05    0.0046       2      22 ..      13      33 ..      12      69 .. 0.76

  Alignments for each domain:
  == domain 1    score: 14.2 bits;  conditional E-value: 1.3e-05
  TIGR01500  2 lllvtGasrGfGrelaqelak 22
               ++lvtGasrG+G+ +a  l +
  MMETSP1137-20121227|721_1 13 VALVTGASRGIGKGIAVALGR 33
               79**************98876 PP

>> TIGR01289  LPOR: light-dependent protochlorophyllide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   0.0   3.4e-05     0.012       5     116 ..      13     133 ..      10     188 .. 0.70
   2 ?   -3.5   0.0       3.5   1.2e+03     212     226 ..     201     215 ..     195     219 .. 0.81

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 3.4e-05
  TIGR01289   5 tviitgassglglaaakalvekgkwhvvmacrd.........le.kaekaakslglpkdsytilkldlasldsvrkfveqfresgrsldalvcna.avylpllkeplfsadgyelsvatnhlg 116
                 +++tgas g+g   a al   g + v    r          l+   e +a+++    ++   l+ d+++ +++ + ++q  +++ +ld l c a +v    lk p +  +g e+  a n +g
  MMETSP1137-20121227|721_1  13 VALVTGASRGIGKGIAVALGRAG-FIVYAVGRSsresseetgLDlTIEATAEKITSVGGTGHALRCDISKDEAINEAIAQVSDAEGRLDLLCCSAyTVPSGPLKAPFWE-QGVEMWDAVNSVG 133
                5789*******************.4444444431111111112112355677777777777889*************************99998733444567888775.6778777777766 PP

  == domain 2    score: -3.5 bits;  conditional E-value: 3.5
  TIGR01289 212 tgivfaslypgcvad 226
                 g++  +lypg v +
  MMETSP1137-20121227|721_1 201 LGVATCALYPGVVKT 215
                5888899****9865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (324 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       152  (0.0370551); expected 82.0 (0.02)
Passed bias filter:                      142  (0.0346173); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                        12  (0.0029254); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.37u 0.15s 00:00:00.52 Elapsed: 00:00:00.51
# Mc/sec: 838.52
//
Query:       MMETSP1137-20121227|722_1  [L=260]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (260 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       110  (0.0268162); expected 82.0 (0.02)
Passed bias filter:                       98  (0.0238908); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.12s 00:00:00.35 Elapsed: 00:00:00.41
# Mc/sec: 837.00
//
Query:       MMETSP1137-20121227|723_1  [L=286]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (286 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        70  (0.0170648); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.17s 00:00:00.40 Elapsed: 00:00:00.51
# Mc/sec: 740.17
//
Query:       MMETSP1137-20121227|724_1  [L=369]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.4e-58  194.3   0.4    1.4e-57  193.0   0.3    1.6  1  TIGR00116 tsf: translation elongation factor Ts


Domain annotation for each model (and alignments):
>> TIGR00116  tsf: translation elongation factor Ts
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  193.0   0.3   3.4e-61   1.4e-57       8     274 ..      68     367 ..      63     369 .] 0.84

  Alignments for each domain:
  == domain 1    score: 193.0 bits;  conditional E-value: 3.4e-61
  TIGR00116   8 lvkeLRektdAgmmdCkkALveangDlekAidllRekGiakaakkadrvAaeGvvllkvdndkavlveinsetDFvAknegfkelanklle.......elkankittveelkkselen..........ke..veeklaslvakigEnilvrriavleaksseviksYlHan.....ariGvlveikgksee.....elakdlAmHvAAvkPqfldqddvsaevvkkereiekdqaelegkPekilekiveGrlkkflaeisLleqkfvmddkk.tvkqllke......knakvtefvrfevGe 274
                l+keLR +t A +  C kAL+ea+gDle+A   lR++G+a+a kka+r A eG v++   +d   lve+nsetDFvA+ne f++l + +++           +  + + e+++ +++           ++  + e +  +++++gEni++rr   l+ + s v+ +Y+H        + G  v+i  ++++      la+++AmH+ A +P  l+++ ++   +k e ++ ++qa  egkP +i+ek+v+Gr++kf ++ +Lleq  v+dd+   +k++l++        ++++ f rf+ Ge
  MMETSP1137-20121227|724_1  68 LIKELRARTSAPLNKCVKALQEAEGDLEQAAIILRKMGVASAHKKAGRGAFEGAVAMAHTDDAVALVELNSETDFVARNEVFQQLXKGVAHnalelgvG---QAVSATGEVRAVDMDAlnvaslalapEPttIGEAIGVAMSQLGENIVLRRAQCLRLRGSGVVGAYVHNAyspgvGQTGAAVAIASDAADtamlrTLAHQIAMHIVAAAPSALSKESIEPAKLKAELDLLTEQARDEGKPAEIIEKVVAGRMNKFYQDNALLEQPXVVDDSAgPIKKVLQAaakkvgAPVEIIGFLRFHTGE 367
                79***********************************************************************************99887744333331...2233333333333322111111111122347899*********************************7422222466778999988666799999*************************************************************************9973699999998888888899**********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (369 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       141  (0.0343735); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.31u 0.13s 00:00:00.44 Elapsed: 00:00:00.75
# Mc/sec: 649.39
//
Query:       MMETSP1137-20121227|725_1  [L=115]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (115 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        61  (0.0148708); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.13s 00:00:00.27 Elapsed: 00:00:00.30
# Mc/sec: 505.96
//
Query:       MMETSP1137-20121227|726_1  [L=1036]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00056   16.8   0.0    0.00086   16.2   0.0    1.2  1  TIGR03669 urea_ABC_arch: urea ABC transporter, substrate-binding protein


Domain annotation for each model (and alignments):
>> TIGR03669  urea_ABC_arch: urea ABC transporter, substrate-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0   2.1e-07   0.00086     160     269 ..     219     330 ..     208     342 .. 0.86

  Alignments for each domain:
  == domain 1    score: 16.2 bits;  conditional E-value: 2.1e-07
  TIGR03669 160 ndaevvGeefiPlsvssfsstiqriqkadPdfvlsllvGanhesfyeqkasadlelPigtsvavaqgyehk...rfeapalkdvyagvnyleeidteeaeafverfyekfPda 269
                 +++vv   + P +  sf+  +qr+ + + +  l++ +G +++sf  qkas+   l  gts   a g   +    ++++  +d + g  y+ +++t+e++a  +rf++ +P  
  MMETSP1137-20121227|726_1 219 TGTNVVSFAYSPTDALSFEVQMQRVASTNLNVFLAVTLGISEASFILQKASEFGILGAGTSWMFADGIFGEsliAIDPELHADAH-GSLYISQMPTSEDDAGWSRFTADWPSF 330
                6899*************************************************************99654401145666666666.567**********************54 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1036 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       123  (0.0299854); expected 82.0 (0.02)
Passed bias filter:                       96  (0.0234032); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.62u 0.14s 00:00:00.76 Elapsed: 00:00:01.00
# Mc/sec: 1367.41
//
Query:       MMETSP1137-20121227|727_1  [L=827]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (827 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       103  (0.0251097); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.52u 0.17s 00:00:00.69 Elapsed: 00:00:00.44
# Mc/sec: 2480.80
//
Query:       MMETSP1137-20121227|728_1  [L=281]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (281 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       126  (0.0307167); expected 82.0 (0.02)
Passed bias filter:                      112  (0.0273038); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.14s 00:00:00.40 Elapsed: 00:00:00.82
# Mc/sec: 452.30
//
Query:       MMETSP1137-20121227|729_1  [L=163]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (163 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        42  (0.0102389); expected 82.0 (0.02)
Passed bias filter:                       42  (0.0102389); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.16s 00:00:00.33 Elapsed: 00:00:00.32
# Mc/sec: 672.32
//
Query:       MMETSP1137-20121227|730_1  [L=282]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (282 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        36  (0.00877621); expected 82.0 (0.02)
Passed bias filter:                       36  (0.00877621); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.14s 00:00:00.37 Elapsed: 00:00:00.37
# Mc/sec: 1005.97
//
Query:       MMETSP1137-20121227|731_1  [L=326]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (326 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        53  (0.0129205); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.15s 00:00:00.38 Elapsed: 00:00:00.63
# Mc/sec: 682.99
//
Query:       MMETSP1137-20121227|732_1  [L=93]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (93 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        38  (0.00926377); expected 82.0 (0.02)
Passed bias filter:                       35  (0.00853242); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.17s 00:00:00.29 Elapsed: 00:00:01.00
# Mc/sec: 122.75
//
Query:       MMETSP1137-20121227|733_1  [L=138]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (138 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        86  (0.0209654); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.14s 00:00:00.29 Elapsed: 00:00:00.30
# Mc/sec: 607.15
//
Query:       MMETSP1137-20121227|734_1  [L=630]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.4e-08   29.4  12.6    7.4e-08   29.4   8.7    2.3  2  TIGR00931 antiport_nhaC: Na+/H+ antiporter NhaC


Domain annotation for each model (and alignments):
>> TIGR00931  antiport_nhaC: Na+/H+ antiporter NhaC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   1.0     0.024        99     318     398 ..     154     231 ..      81     290 .. 0.69
   2 !   29.4   8.7   1.8e-11   7.4e-08      52     190 ..     436     578 ..     401     595 .. 0.73

  Alignments for each domain:
  == domain 1    score: -0.7 bits;  conditional E-value: 0.024
  TIGR00931 318 alslgGvlqklGvlkvivqklekkvistlsltlst.llvallvnvvtceqyvsillpgkiledayvklnldkknlsrtaeda 398
                  +  G++qk G    + q l+++++s++s  l t +l++l    +  + y s+l+ g+ l+ +   l +++  ++  + + 
  MMETSP1137-20121227|734_1 154 LGGTIGLVQKAGGGLALGQLLQRFMKSAYSALLCTwSLAGL----IFFDDYSSLLIVGNSLRPVLPALRVAPERFAFVVHVM 231
                22344778888877777788888888877655444034333....3347788888888888777777777766665555555 PP

  == domain 2    score: 29.4 bits;  conditional E-value: 1.8e-11
  TIGR00931  52 ykdledaivegikkglkavlilvsvGlligtWiagGtvPt..liyyGlkiisPeyllvatl.licaivsvatGtsfgtvGt....vGvallgigeglgidlalvaGavvaGayfGdklsPlsdttnlasalagvdllehirhllyt 190
                  +  +a + g+k  l++ ++l++  +l  +    G v t  ++   l++  P + l + + +++  +s a G+sfgt+      vG   + ++ +  i  +++a +v+ Ga+fG+  sP+sdtt l+  +++ dl +h+r +   
  MMETSP1137-20121227|734_1 436 VSEAMEAWMAGMKDVLEPCFVLLLAWALGEV---VGLVRTadFLAGALHAGMPRWALPTLItVLAHAISYACGSSFGTMAIilplVGPLAMKLAAAATICSTASALSVLGGAVFGNICSPISDTTILTVLATKCDLQAHVRTITPY 578
                3444556677888888888887765444332...2344331134445777789886544332467889**********98622225878889999999999999999**********************************98633 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (630 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       154  (0.0375427); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.14s 00:00:00.56 Elapsed: 00:00:00.60
# Mc/sec: 1385.89
//
Query:       MMETSP1137-20121227|736_1  [L=90]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (90 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        58  (0.0141394); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.34
# Mc/sec: 349.38
//
Query:       MMETSP1137-20121227|737_1  [L=173]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (173 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        48  (0.0117016); expected 82.0 (0.02)
Passed bias filter:                       42  (0.0102389); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.15s 00:00:00.34 Elapsed: 00:00:00.33
# Mc/sec: 691.94
//
Query:       MMETSP1137-20121227|738_1  [L=298]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00015   19.1   0.3     0.0002   18.7   0.2    1.1  1  TIGR02349 DnaJ_bact: chaperone protein DnaJ


Domain annotation for each model (and alignments):
>> TIGR02349  DnaJ_bact: chaperone protein DnaJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.2   4.9e-08    0.0002       1      45 [.      80     122 ..      80     128 .. 0.89

  Alignments for each domain:
  == domain 1    score: 18.7 bits;  conditional E-value: 4.9e-08
  TIGR02349   1 dYYeiLgvskdAseeeikkAYrklakkyHPDrnkgekeaeekfke 45 
                +YY +Lg+s dAs +ei+ AY  l  +y  D+++   +a ek ke
  MMETSP1137-20121227|738_1  80 NYYRTLGISEDASYDEIMDAYIALTETYSEDAKR--LAAVEKAKE 122
                6****************************99988..667777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (298 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       106  (0.0258411); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.24u 0.15s 00:00:00.39 Elapsed: 00:00:00.49
# Mc/sec: 802.71
//
Query:       MMETSP1137-20121227|739_1  [L=854]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (854 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       157  (0.038274); expected 82.0 (0.02)
Passed bias filter:                      115  (0.0280351); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.56u 0.17s 00:00:00.73 Elapsed: 00:00:00.50
# Mc/sec: 2254.37
//
Query:       MMETSP1137-20121227|741_1  [L=340]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (340 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        49  (0.0119454); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.11s 00:00:00.36 Elapsed: 00:00:00.38
# Mc/sec: 1180.96
//
Query:       MMETSP1137-20121227|742_1  [L=57]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        42  (0.0102389); expected 82.0 (0.02)
Passed bias filter:                       31  (0.00755729); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.18s 00:00:00.30 Elapsed: 00:00:00.40
# Mc/sec: 188.08
//
Query:       MMETSP1137-20121227|743_1  [L=345]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (345 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        68  (0.0165773); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.14s 00:00:00.41 Elapsed: 00:00:00.46
# Mc/sec: 989.92
//
Query:       MMETSP1137-20121227|744_1  [L=207]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (207 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       182  (0.0443686); expected 82.0 (0.02)
Passed bias filter:                      146  (0.0355924); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.16s 00:00:00.37 Elapsed: 00:00:00.36
# Mc/sec: 758.94
//
Query:       MMETSP1137-20121227|745_1  [L=229]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (229 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       112  (0.0273038); expected 82.0 (0.02)
Passed bias filter:                      109  (0.0265724); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.16s 00:00:00.36 Elapsed: 00:00:00.33
# Mc/sec: 915.92
//
Query:       MMETSP1137-20121227|746_1  [L=297]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (297 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        71  (0.0173086); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.16s 00:00:00.40 Elapsed: 00:00:00.36
# Mc/sec: 1088.91
//
Query:       MMETSP1137-20121227|747_1  [L=866]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0098   13.0  46.5       0.02   12.0  32.3    1.4  1  TIGR02794 tolA_full: protein TolA


Domain annotation for each model (and alignments):
>> TIGR02794  tolA_full: protein TolA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.0  32.3   4.8e-06      0.02     155     230 ..     725     798 ..     710     841 .. 0.48

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 4.8e-06
  TIGR02794 155 eeAakkaEeeakakaaaeakkkaEaeeakkkaeaeakKakaeaeaKakae.eakaKaeae.........AkaKAeaeAkaKaeaea 230
                ++A +++Ee ++a++a+         +a+k aeaea   +a a++Ka++e +akaKaeae         AkaK +a A+  a a+a
  MMETSP1137-20121227|747_1 725 AAAMAEQEEVRAAQEAE---------DAAKLAEAEA---EAAAKQKAAEEaAAKAKAEAEaeaaaeaqaAKAKEAAPAAPTATAAA 798
                22333333333344443.........4444444443...44444444333222222222200000000122222222222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (866 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       329  (0.0802048); expected 82.0 (0.02)
Passed bias filter:                      104  (0.0253535); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.59u 0.15s 00:00:00.74 Elapsed: 00:00:00.48
# Mc/sec: 2381.30
//
Query:       MMETSP1137-20121227|748_1  [L=66]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (66 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        29  (0.00706972); expected 82.0 (0.02)
Passed bias filter:                       27  (0.00658216); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.15s 00:00:00.28 Elapsed: 00:00:00.24
# Mc/sec: 362.97
//
Query:       MMETSP1137-20121227|749_1  [L=967]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (967 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        84  (0.0204778); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.55u 0.14s 00:00:00.69 Elapsed: 00:00:00.56
# Mc/sec: 2239.18
//
Query:       MMETSP1137-20121227|750_1  [L=471]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   4.3e-122  405.9   0.0    3.3e-76  254.6   0.0    2.5  2  TIGR01986 glut_syn_euk: glutathione synthetase


Domain annotation for each model (and alignments):
>> TIGR01986  glut_syn_euk: glutathione synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  148.8   0.0   9.9e-48   4.1e-44       4     229 ..      14     247 ..      11     252 .. 0.84
   2 !  254.6   0.0     8e-80   3.3e-76     260     472 ..     255     468 ..     247     469 .. 0.95

  Alignments for each domain:
  == domain 1    score: 148.8 bits;  conditional E-value: 9.9e-48
  TIGR01986   4 LvkealdfalaeGlvltekkvekegeviasvaPitlfPsviPealfeeavsvqkvfneLvdrvsqdaafLektlsslaksDeftakLldlykkvlkavenkkqdlrLGlfrsDYlldkd..dgtealkqvelntisvsfgGlskkvsrlhayllrslkkqkkadken................ylvintsskglakalakaveaYksprksitskdaivllivqeeernifDqrvleleLlekf 229
                L  e+l++a + G+++  +          ++aP +l+P ++P +lf +a+s+ + fn Lvdr ++d ++L++t++ ++k+D+ft++Ll+l ++v      + q+l+LG++rsDY++++   d+++ l qvelntis sf+ ls+kv +lh+ ll     + ++d +                  l++nts + ++ ala a + Y+  ++      + v+++vq+  rn++Dqr +e  L   +
  MMETSP1137-20121227|750_1  14 LRDETLHWAGTTGVLVGAEG-------AYMHAPCALLPYPFPASLFAQATSLAEPFNLLVDRCARDLDWLHRTTRLVTKHDDFTGRLLKLSEQVAA---XLLQPLQLGIYRSDYMIHQPsaDDAPRLMQVELNTISSSFASLSNKVCALHRELLTRWGCSANPDVQSalsrlppiaaaladneLLPVNTSETDICAALAAAHKRYNALQDGEPQVPTAVVMVVQPTXRNVVDQRGIEIGLWSVH 247
                66677777777777776433.......359************************************************************999876...999***************976799****************************99865444333332222222333333444445689***********************888888888999****************9987665 PP

  == domain 2    score: 254.6 bits;  conditional E-value: 8e-80
  TIGR01986 260 eqevavvYyrsGYtlddypseeeWearLllekslaikcPdiatqLaGskkiqqeLaeegvLerfledkeevaklrktfadlysLDd..tkrGkegiklalekPskfvlkPqreGGGnnvYgedipelLkklkeeerdaYiLmekiepelsenillreekaekeqviselGiyGvvlrnekkvvvneqsGfllrtkikksneGGvaaGfavLdsiy 472
                + e +vvY+r GYt++dypse eWe r l+e+s+aikcP++  +LaG+kk+qq+La+e  L+rf++ +e+ a lr++fa+l+ LD+  + + + +++ a +kP +fvlkPqreGGGnn+++++++ +L +++  er+ YiLme+i p   e +l+++++ e  ++  elGiyG +l + ++v  n+ +G+llr k+ + neGGv aGfa+L s++
  MMETSP1137-20121227|750_1 255 TLEASVVYFRAGYTPNDYPSETEWEGRTLIERSYAIKCPSVGQHLAGTKKVQQVLASEAELNRFVS-AEHAAMLRSSFAQLHGLDEegGAEVEAAVEAACAKPHDFVLKPQREGGGNNLFDDELKAALLRMPPAERAGYILMERIRPPTLEAMLMKGGNVESGPCACELGIYGLFLGDGERVFLNQSAGHLLRVKLSTVNEGGVVAGFAALGSPV 468
                67899*************************************************************.9*****************92223445578999****************************************************************************************************************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (471 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.11s 00:00:00.49 Elapsed: 00:00:01.04
# Mc/sec: 597.76
//
Query:       MMETSP1137-20121227|751_1  [L=120]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0023   13.5   5.2     0.0026   13.3   3.6    1.0  1  TIGR02169 SMC_prok_A: chromosome segregation protein SMC
  ------ inclusion threshold ------
      0.012   11.3   0.1      0.013   11.1   0.1    1.0  1  TIGR03744 traC_PFL_4706: conjugative transfer ATPase, PFL_4706 family
      0.028   12.3   0.2      0.052   11.5   0.1    1.4  1  TIGR02044 CueR: Cu(I)-responsive transcriptional regulator


Domain annotation for each model (and alignments):
>> TIGR02169  SMC_prok_A: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   3.6   1.9e-06    0.0026     225     330 ..      14     116 ..      10     120 .] 0.83

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 1.9e-06
  TIGR02169 225 eltlllkelealekqkekiekelaeleeelekleeeieelekeleeiekkleelnkkieklgeeeqlavkekleelkaeiekleraiae.keeeledaeerlakaea 330
                e+++++ +++ + k++++ +ke+a++e+ +++ +      e  +++ e++l+e    ++   ++e+ ++k+ +eel + +e++ +     + ee++ a+e+lakaea
  MMETSP1137-20121227|751_1  14 EVKIKAGSVNRMMKDLQASDKEIARQEQRIQQWKDDPTRDEYDVKKQEEVLAEY---VSG-RSDEMSRLKKFVEELASCVEECPEDDGLsESEEVKGAKETLAKAEA 116
                7889999999*********************99999998888888888888765...444.6789*****************9766655055678999999998876 PP

>> TIGR03744  traC_PFL_4706: conjugative transfer ATPase, PFL_4706 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.1   9.6e-06     0.013      65     143 ..      25     107 ..       6     110 .. 0.84

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 9.6e-06
  TIGR03744  65 vedalqdsldeldeapwvvqfy....vqDekdleeyvekLrdYvkpkakgsefteayleemekhlkaiskpgGLfeDtevtka 143
                + + lq s +e+  +   +q++    ++De d++++ e L +Yv+ +  + +  ++++ee+++ +++   ++GL e +ev +a
  MMETSP1137-20121227|751_1  25 MMKDLQASDKEIARQEQRIQQWkddpTRDEYDVKKQEEVLAEYVSGRSDEMSRLKKFVEELASCVEECPEDDGLSESEEVKGA 107
                4456788888888888888888333346899*********************************************9999875 PP

>> TIGR02044  CueR: Cu(I)-responsive transcriptional regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.1   3.8e-05     0.052      68     117 ..      45      97 ..      24     101 .. 0.76

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 3.8e-05
  TIGR02044  68 slandrerksadvkartl...ekvaelerkiselqeikdqleelaeaCpGddk 117
                +  +d+ r   dvk++     e v+  + ++s+l+++ ++l + +e+Cp dd 
  MMETSP1137-20121227|751_1  45 QWKDDPTRDEYDVKKQEEvlaEYVSGRSDEMSRLKKFVEELASCVEECPEDDG 97 
                455789*******98764111555666777888888888999999****9985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (120 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       279  (0.0680156); expected 82.0 (0.02)
Passed bias filter:                      207  (0.0504632); expected 82.0 (0.02)
Passed Vit filter:                        24  (0.0058508); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.20u 0.16s 00:00:00.36 Elapsed: 00:00:00.50
# Mc/sec: 316.77
//
Query:       MMETSP1137-20121227|752_1  [L=148]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (148 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       130  (0.0316919); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.13s 00:00:00.30 Elapsed: 00:00:00.31
# Mc/sec: 630.14
//
Query:       MMETSP1137-20121227|753_1  [L=294]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (294 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       105  (0.0255973); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.10s 00:00:00.34 Elapsed: 00:00:00.51
# Mc/sec: 760.88
//
Query:       MMETSP1137-20121227|754_1  [L=282]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (282 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        79  (0.0192589); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.17s 00:00:00.42 Elapsed: 00:00:00.42
# Mc/sec: 886.21
//
Query:       MMETSP1137-20121227|756_1  [L=338]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00012   17.8  22.0    0.00015   17.5  15.3    1.1  1  TIGR02168 SMC_prok_B: chromosome segregation protein SMC
  ------ inclusion threshold ------
      0.016   11.5  22.6      0.023   11.0  15.7    1.1  1  TIGR03319 YmdA_YtgF: conserved hypothetical protein YmdA/YtgF
      0.048    9.1  25.8      0.068    8.6  17.9    1.1  1  TIGR02169 SMC_prok_A: chromosome segregation protein SMC
        0.3    8.8  35.2      0.067   10.9   2.5    2.5  2  TIGR01144 ATP_synt_b: ATP synthase F0, B subunit


Domain annotation for each model (and alignments):
>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5  15.3   1.5e-07   0.00015     746     920 ..     121     298 ..      73     327 .. 0.56

  Alignments for each domain:
  == domain 1    score: 17.5 bits;  conditional E-value: 1.5e-07
  TIGR02168 746 qleerlaqlekeleeleeereeleeeleeaeeelkeaeeeieeleaeieqlkeelkalrealseleaelt.elkeeaaekeerleslekeiaalekeleeleeqieeleeeiesleaeieeleeeleeleeeleellkekasleealaelreele..elseelrelekkvkelerele 920
                ++++  + l+++l ++++  ee++e+ e  ++e++e ++ + +    ++q++++l+ + ++l+ +++el+ +l++++     ++++le+e+a+++ ++ + +eq++++++ ++++ ++++++ +e++e  ++++++  + ++++++++++ ++ +  +l+e  +++ekk+++l ++++
  MMETSP1137-20121227|756_1 121 AVADANQALKQALGKADQITEEASEKSERMRSEASEMSDMSRTGLLAAQQQTTSLQISLRQLNTQRDELQgKLHSTFPLMIYKRRRLEREVANIRVQISDKDEQLSKASKYQAEALEQLTKAAAEEAEVDAAAAKMVSDAEKAAKQVRQAAKRANeiALKEAKHKAEKKAQDLAKQAD 298
                3444444555555555555555555555555555555555555555555555555555555555555555555555555555566666666666666666666666666666666666666666656555555555554444444444444432200233333333333333333332 PP

>> TIGR03319  YmdA_YtgF: conserved hypothetical protein YmdA/YtgF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0  15.7   2.2e-05     0.023      17     200 ..     119     306 ..     107     323 .. 0.57

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 2.2e-05
  TIGR03319  17 llakkiaekkleeaeeeakkiieeakkeaeakkkealleakeevkklreelekelkerrkelqklekrlkqkeekldrkkek.lekkeeelekkekeleekekeleekeeeleellkeqkeeLekisgltqeeAk.....ellleeveeelke..eaaklikeie.eeakeeadkkakeilalaiqrlaadvv 200
                  a   a++ l++a  +a++i eea++++e+ + e    a e     r+     ++++++ lq   ++l+ ++++l+ k ++ +     + ++ e+e+++ + ++++k+e+l++  k q e Le++++ ++eeA      + ++++ e+ +k+  +aak+ +ei  +eak++a+kka+++  +a   la    
  MMETSP1137-20121227|756_1 119 EAAVADANQALKQALGKADQITEEASEKSERMRSE----ASEMSDMSRT-GLLAAQQQTTSLQISLRQLNTQRDELQGKLHStFPLMIYKRRRLEREVANIRVQISDKDEQLSKASKYQAEALEQLTKAAAEEAEvdaaaAKMVSDAEKAAKQvrQAAKRANEIAlKEAKHKAEKKAQDLAKQADIGLAKVAE 306
                33444445555555555555555555555444433....3333333333.33445556666777777777666666666543133344444555667777778888888888888888888888888888887652211144555555444432245555555544788899999999998888665555443 PP

>> TIGR02169  SMC_prok_A: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6  17.9   6.7e-05     0.068     244     442 ..     119     309 ..     114     322 .. 0.81

  Alignments for each domain:
  == domain 1    score: 8.6 bits;  conditional E-value: 6.7e-05
  TIGR02169 244 ekelaeleeelekleeeieelekeleeiekkleelnkkieklgeeeqlavkekleelkaeiekleraiaekeeeledaeerlakaeaeidklkeeieelereieeekkereklkeelkelkeeleelraeleevdkeaaelreelkelkekleklkeelnelkreldrlleelkrleeelaelkaelerieekiaelee 442
                e+ +a++++ l++   +++++ +e  e+ ++++  + ++++++    la +++  +l++++++l+ + +e + +l     +   +  ++++l++e+++++ +i ++  +  k ++  +e+ e+l +  ae +evd++aa+++   +++ +++ ++ ++ ne+      l+e ++++e++ ++l ++     +k+ae ee
  MMETSP1137-20121227|756_1 119 EAAVADANQALKQALGKADQITEEASEKSERMRSEASEMSDMSRTGLLAAQQQTTSLQISLRQLNTQRDELQGKL---HSTFPLMIYKRRRLEREVANIRVQISDKDEQLSKASKYQAEALEQLTKAAAEEAEVDAAAAKMVSDAEKAAKQVRQAAKRANEIA-----LKEAKHKAEKKAQDLAKQADIGLAKVAETEE 309
                567888889999999999999999999999999999999999999999999999999999999998888776654...5667778888889999999999999999999888888888888888888888899999999999999999999999999999998.....7777777777777777777666666666655 PP

>> TIGR01144  ATP_synt_b: ATP synthase F0, B subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   2.5   6.5e-05     0.067      48      98 ..     121     171 ..     117     194 .. 0.85
   2 ?    3.8  16.0      0.01        11      32     103 ..     233     304 ..     223     322 .. 0.84

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 6.5e-05
  TIGR01144  48 aqkkaqellkeakeeaaeiienAnkrkseikeeikkeAeeerekilakaea 98 
                a + a++ lk+a  +a +i e+A ++ +++++e+ +     r+ +la+ ++
  MMETSP1137-20121227|756_1 121 AVADANQALKQALGKADQITEEASEKSERMRSEASEMSDMSRTGLLAAQQQ 171
                667899******************************999999999887765 PP

  == domain 2    score: 3.8 bits;  conditional E-value: 0.01
  TIGR01144  32 addlasaekakkelalaqkkaqellkeakeeaaeiienAnkrkseikeeikkeAeeerekilakaeaeieae 103
                a++l+++ ka+ e a++ + a +++++a + a+++ ++A++ ++  + e+k++Ae++++ + ++a   +++ 
  MMETSP1137-20121227|756_1 233 AEALEQLTKAAAEEAEVDAAAAKMVSDAEKAAKQVRQAAKRANEIALKEAKHKAEKKAQDLAKQADIGLAKV 304
                899********************************9999999999*******************98766543 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (338 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       743  (0.181131); expected 82.0 (0.02)
Passed bias filter:                      184  (0.0448562); expected 82.0 (0.02)
Passed Vit filter:                        24  (0.0058508); expected 4.1 (0.001)
Passed Fwd filter:                         8  (0.00195027); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.53u 0.22s 00:00:00.75 Elapsed: 00:00:00.51
# Mc/sec: 874.75
//
Query:       MMETSP1137-20121227|757_1  [L=316]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (316 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       222  (0.0541199); expected 82.0 (0.02)
Passed bias filter:                      137  (0.0333983); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.13s 00:00:00.39 Elapsed: 00:00:00.40
# Mc/sec: 1042.71
//
Query:       MMETSP1137-20121227|758_1  [L=289]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (289 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       115  (0.0280351); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.13s 00:00:00.36 Elapsed: 00:00:00.42
# Mc/sec: 908.21
//
Query:       MMETSP1137-20121227|759_1  [L=404]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.5e-59  199.3   0.0    1.9e-59  199.0   0.0    1.0  1  TIGR01735 FGAM_synt: phosphoribosylformylglycinamidine synthase
    7.3e-25   84.9   1.4      9e-25   84.6   1.0    1.0  1  TIGR01739 tegu_FGAM_synt: herpesvirus tegument protein/v-FGAM-synthase
    3.2e-18   63.7   0.0      5e-18   63.1   0.0    1.1  1  TIGR01737 FGAM_synth_I: phosphoribosylformylglycinamidine synthase I
    1.1e-11   40.9   0.0    1.5e-11   40.4   0.0    1.0  1  TIGR01857 FGAM-synthase: phosphoribosylformylglycinamidine synthase


Domain annotation for each model (and alignments):
>> TIGR01735  FGAM_synt: phosphoribosylformylglycinamidine synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  199.0   0.0   1.9e-62   1.9e-59    1165    1304 ..       5     146 ..       3     149 .. 0.97

  Alignments for each domain:
  == domain 1    score: 199.0 bits;  conditional E-value: 1.9e-62
  TIGR01735 1165 enwpkfvrnkserfearvalvkvkespsillkgmeGsrlpvavahGeGrakfeseealaeleasglvalryvdddgkvteaYPlnpnGspeGiagitsaDGrvlilmPhPervfravqlsWkPeewde.dt.pWlrlfrnar 1304
                 e++p+f++n s+r+e+r+ +v +++sp++ll+gmeGs+l+v+vahGeG+a+  +e +l+++  ++l++lry+ddd  vt+aYP+npnGsp+Gia+++s DGr+l++mPhPer+++ +q++W P++w++ d+ pWlr+f+na 
  MMETSP1137-20121227|759_1    5 EHQPRFIHNTSGRYESRWVSVVIQPSPAVLLRGMEGSSLGVWVAHGEGKAHIPHEPVLDNVLEKQLAPLRYIDDDCAVTTAYPFNPNGSPHGIAALCSDDGRHLAMMPHPERAYLKWQCPWLPKQWETlDAmPWLRMFQNAL 146 
                 799*****************************************************************************************************************************8778********95 PP

>> TIGR01739  tegu_FGAM_synt: herpesvirus tegument protein/v-FGAM-synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.6   1.0   8.7e-28     9e-25    1057    1201 ..       4     146 ..       1     150 [. 0.92

  Alignments for each domain:
  == domain 1    score: 84.6 bits;  conditional E-value: 8.7e-28
  TIGR01739 1057 ke.pvaLeknaSglyeSrWlniyiPettksvflrplkgsvlPcWaqGthLGlsfksdgveeeleesgqiaatFhgksassglpAtnYPrnPsgg.snvAglCSeDGRhlalliDPslsfflwqWqyvpeeneelqvsPWklmFqqll 1201
                 +e +++   n Sg+yeSrW ++ i + + +v+lr ++gs l  W+     + ++++++v ++  e+++  +++   +   +   t YP nP+g    +A+lCS+DGRhla++  P  +   wq +++p+++e l   PW  mFq++l
  MMETSP1137-20121227|759_1    4 QEhQPRFIHNTSGRYESRWVSVVIQP-SPAVLLRGMEGSSLGVWVAHGEGKAHIPHEPVLDNVLEKQLAPLRYIDDDCAVT---TAYPFNPNGSpHGIAALCSDDGRHLAMMPHPERAYLKWQCPWLPKQWETLDAMPWLRMFQNAL 146 
                 555678899*****************.******************999999999999****99998999999999888888...99*******8457***********************************************987 PP

>> TIGR01737  FGAM_synth_I: phosphoribosylformylglycinamidine synthase I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.1   0.0   4.9e-21     5e-18     101     210 ..      10     121 ..       7     126 .. 0.89

  Alignments for each domain:
  == domain 1    score: 63.1 bits;  conditional E-value: 4.9e-21
  TIGR01737 101 llknaslrFisrevklkvenektaftkkykkgevvrlPvahaeGryvvddee.leklesndqivfryvdekGdva..eevnpnGsveniagivneegnvlglmPhPeralekl 210
                +++n+s r++sr+v++ ++ + +++++ ++    + + vah+eG+  +++e  l ++ +++   +ry+d++  v+  ++ npnGs + ia+++ ++g+ l++mPhPera  k 
  MMETSP1137-20121227|759_1  10 FIHNTSGRYESRWVSVVIQPSPAVLLRGMEG-SSLGVWVAHGEGKAHIPHEPvLDNVLEKQLAPLRYIDDDCAVTtaYPFNPNGSPHGIAALCSDDGRHLAMMPHPERAYLKW 121
                689****************999999999876.99************999665156666666677*******999867899*****************************9876 PP

>> TIGR01857  FGAM-synthase: phosphoribosylformylglycinamidine synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.4   0.0   1.4e-14   1.5e-11    1103    1215 ..       5     117 ..       3     120 .. 0.87

  Alignments for each domain:
  == domain 1    score: 40.4 bits;  conditional E-value: 1.4e-14
  TIGR01857 1103 easptltynkinrhvsklvrtkiaskksPwlsevsvGeihaipvshGeGrfvasde.vlkelvengqiatqyvdlegeaamdlkynPnGsslaieGiiskdGrilGkmGhsery 1215
                 e+ p +++n+ +r+ s+ v   i  + +  l +++ G    + v+hGeG+  +++e vl ++ e +    +y+d +  ++  +++nPnGs + i  + s dGr l  m h er 
  MMETSP1137-20121227|759_1    5 EHQPRFIHNTSGRYESRWVSVVIQPSPAVLLRGME-GSSLGVWVAHGEGKAHIPHEpVLDNVLEKQLAPLRYIDDDCAVTTAYPFNPNGSPHGIAALCSDDGRHLAMMPHPERA 117 
                 6788999************9888777777777776.9999**********999877266666666555679*****************************************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (404 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        50  (0.0121892); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.33u 0.16s 00:00:00.49 Elapsed: 00:00:00.40
# Mc/sec: 1333.09
//
Query:       MMETSP1137-20121227|760_1  [L=309]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (309 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       110  (0.0268162); expected 82.0 (0.02)
Passed bias filter:                      103  (0.0251097); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.16s 00:00:00.41 Elapsed: 00:00:00.50
# Mc/sec: 815.69
//
Query:       MMETSP1137-20121227|761_1  [L=265]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.5e-05   21.2   0.4    0.00022   18.0   0.2    2.3  2  TIGR01302 IMP_dehydrog: inosine-5'-monophosphate dehydrogenase
     0.0027   14.2   1.0       0.55    6.6   0.0    2.4  3  TIGR01137 cysta_beta: cystathionine beta-synthase


Domain annotation for each model (and alignments):
>> TIGR01302  IMP_dehydrog: inosine-5'-monophosphate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0      0.15   3.1e+02     163     191 ..      45      72 ..      26      91 .. 0.71
   2 !   18.0   0.2   1.1e-07   0.00022      56     198 ..      98     260 ..      85     263 .. 0.73

  Alignments for each domain:
  == domain 1    score: -2.2 bits;  conditional E-value: 0.15
  TIGR01302 163 leeaeevleekkieklpvvdkegelvglv 191
                  +a + l++++++  p+++++g l+ + 
  MMETSP1137-20121227|761_1  45 SVTASQALHKNRKN-PPILNDSGSLLDVA 72 
                45677888898888.78888888876543 PP

  == domain 2    score: 18.0 bits;  conditional E-value: 1.1e-07
  TIGR01302  56 reGgiGviHknmsiekqveevkkvKraeegvis....dpvtvsPettvedvlelkekkgisgvpvvedgkeegklvGivtkkdlrfvkdkskk............vsevmtkee.....vitvkeeidleeaeevleekkieklpvvdkegelvglvtvkdiek 198
                ++  +G +H n++   q  +++++  +++  ++      vtv+ ++t  ++ ++ ++ ++sgvpv +  ke+ klv  ++++d+r++   +k              + + ++++      +  +++ +l+++ e+l + +i+++ ++++++++  l+++ d+ +
  MMETSP1137-20121227|761_1  98 QSDLLGALHSNLDQIDQKYTLRNISDFHKVRANperqTLVTVQATSTAINAFRVIDHFHVSGVPVLDGSKED-KLVANLSARDVRYIISDNKWpltlhqlsaldlCRMLHSHNDtdpplAVSLSMDNTLRDVIEMLFHYRIHRVFILNQSKQVTHLLSIVDVLE 260
                5666999*****9999999999888877766654333567788888888888999999*******9886665.*************987665434433323322212222222212222356678888999*************************99999865 PP

>> TIGR01137  cysta_beta: cystathionine beta-synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0     0.062   1.3e+02     403     454 ..      50     103 ..       5     106 .. 0.58
   2 !    6.6   0.0   0.00027      0.55     331     388 ..     120     178 ..      83     192 .. 0.72
   3 !    5.8   0.0   0.00048      0.99     344     394 ..     212     262 ..     191     264 .. 0.87

  Alignments for each domain:
  == domain 1    score: -1.1 bits;  conditional E-value: 0.062
  TIGR01137 403 davkkklskklkkidegeklsdlskvleka.daalvveeekpi.gvvtkidlls 454
                +a++k+ +++ +  d+g+ l  ++ ++e++ + alv +    i + +t+ dll+
  MMETSP1137-20121227|761_1  50 QALHKNRKNPPILNDSGSLLDVANMMIETHlHRALVQDSASAIdNFITQSDLLG 103
                333344444444445566666666666655366777777776635788999886 PP

  == domain 2    score: 6.6 bits;  conditional E-value: 0.00027
  TIGR01137 331 vlkvfgnarvkdlalkalvtvketetvadaieilrekGfdqlPvvk..eagkvlgsvtlr 388
                +   f+++r  + + ++lvtv++t t  +a +++ +  ++ +Pv++  ++ k++++ + r
  MMETSP1137-20121227|761_1 120 NISDFHKVRA-NPERQTLVTVQATSTAINAFRVIDHFHVSGVPVLDgsKEDKLVANLSAR 178
                2225777777.667799****************************966555666665555 PP

  == domain 3    score: 5.8 bits;  conditional E-value: 0.00048
  TIGR01137 344 alkalvtvketetvadaieilrekGfdqlPvvkeagkvlgsvtlrellsal 394
                  +  v+++ ++t +d+ie+l ++ + ++ +++++++v+ + + +++l+++
  MMETSP1137-20121227|761_1 212 DPPLAVSLSMDNTLRDVIEMLFHYRIHRVFILNQSKQVTHLLSIVDVLEEV 262
                4566799999******************************99999999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (265 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       163  (0.0397367); expected 82.0 (0.02)
Passed bias filter:                      123  (0.0299854); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.30u 0.15s 00:00:00.44 Elapsed: 00:00:00.48
# Mc/sec: 728.69
//
Query:       MMETSP1137-20121227|762_1  [L=184]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (184 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        56  (0.0136519); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.17s 00:00:00.36 Elapsed: 00:00:00.27
# Mc/sec: 899.48
//
Query:       MMETSP1137-20121227|764_1  [L=97]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (97 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        58  (0.0141394); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.14s 00:00:00.28 Elapsed: 00:00:00.28
# Mc/sec: 457.25
//
Query:       MMETSP1137-20121227|765_1  [L=101]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       103  (0.0251097); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.28
# Mc/sec: 476.10
//
Query:       MMETSP1137-20121227|766_1  [L=313]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (313 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        98  (0.0238908); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.15s 00:00:00.40 Elapsed: 00:00:00.45
# Mc/sec: 918.06
//
Query:       MMETSP1137-20121227|767_1  [L=129]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (129 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       107  (0.0260848); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.19s 00:00:00.33 Elapsed: 00:00:00.67
# Mc/sec: 254.13
//
Query:       MMETSP1137-20121227|768_1  [L=81]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (81 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        65  (0.0158459); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.16s 00:00:00.31 Elapsed: 00:00:00.50
# Mc/sec: 213.82
//
Query:       MMETSP1137-20121227|769_1  [L=135]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (135 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        61  (0.0148708); expected 82.0 (0.02)
Passed bias filter:                       37  (0.00901999); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.18s 00:00:00.34 Elapsed: 00:00:00.31
# Mc/sec: 574.79
//
Query:       MMETSP1137-20121227|770_1  [L=476]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (476 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        44  (0.0107265); expected 82.0 (0.02)
Passed bias filter:                       40  (0.00975134); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.13s 00:00:00.42 Elapsed: 00:00:00.43
# Mc/sec: 1461.09
//
Query:       MMETSP1137-20121227|772_1  [L=196]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      1e-44  150.0   0.0    1.1e-44  149.8   0.0    1.0  1  TIGR00042 TIGR00042: non-canonical purine NTP pyrophosphatase, RdgB/HAM1 family


Domain annotation for each model (and alignments):
>> TIGR00042  TIGR00042: non-canonical purine NTP pyrophosphatase, RdgB/HAM1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  149.8   0.0   2.8e-48   1.1e-44       1     183 [.       6     186 ..       6     187 .. 0.95

  Alignments for each domain:
  == domain 1    score: 149.8 bits;  conditional E-value: 2.8e-48
  TIGR00042   1 kivlaTgNegKlkEvkeiledlgl.eeiaqlkleeieetgktleenallkakavaeilnkpviveDsgLavdaLngaPGlYsaryaktdeknlekilkllegvenrkAefvcviayldkeee.vlvfeGivkGkiaeeergeqgFgyDsiFlvkeedktfaeltkeeKnkiSHRgkAlkklkkll 183
                k++++TgN++Kl+Ev+ il  + l  ei+ +kl+ +e++g + ee++  k + +a  +++pv+veD++L+++aLng+PG+Y++++ ++  ++  ++ +ll+  e++ A+++c+ ay+d  ++ + +f G + G i+   rg++ Fg+D++F +   + t+ae+ k+ Kn iSHR +Al+kl+  l
  MMETSP1137-20121227|772_1   6 KVTFVTGNAKKLEEVRAILGGESLpVEIVSQKLDLPELQG-EPEEISAKKCELAAVEVGGPVFVEDTSLCFNALNGLPGPYIKWFLEK--TGHTGLNNLLAAYEDKSAYAQCIFAYCDGPGHtPVTFDGRTAGIIVPA-RGPHDFGWDPVFQPDGFKETYAEMDKAVKNTISHRYRALAKLQTHL 186
                699******************999899*************.89*******************************************94..444899999*******************8888799***********99.******************************************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (196 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        86  (0.0209654); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.19u 0.13s 00:00:00.32 Elapsed: 00:00:00.32
# Mc/sec: 808.43
//
Query:       MMETSP1137-20121227|773_1  [L=657]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      1e-62  210.4   0.0    6.4e-51  171.5   0.0    2.0  2  TIGR02730 carot_isom: carotene isomerase
    1.3e-28   97.8   0.0    9.9e-17   58.6   0.0    2.3  2  TIGR02734 crtI_fam: phytoene desaturase
    4.3e-26   89.5   0.0      1e-12   45.3   0.0    2.1  2  TIGR02733 desat_CrtD: C-3',4' desaturase CrtD
    2.3e-09   34.9   0.7    6.1e-06   23.6   0.8    2.4  2  TIGR03467 HpnE: squalene-associated FAD-dependent desaturase
    2.1e-06   24.6   1.0    3.6e-06   23.8   0.7    1.3  1  TIGR01316 gltA: glutamate synthase (NADPH), homotetrameric
    3.2e-06   24.4   0.3    6.2e-06   23.5   0.2    1.4  1  TIGR00292 TIGR00292: thiazole biosynthesis enzyme
    3.9e-06   23.5   0.1      8e-06   22.5   0.1    1.5  1  TIGR00562 proto_IX_ox: protoporphyrinogen oxidase
    2.1e-05   20.9   0.4    3.5e-05   20.2   0.3    1.3  1  TIGR03997 mycofact_OYE_2: mycofactocin system FadH/OYE family oxidoreductase 2
    8.8e-05   19.3   0.6    0.00018   18.3   0.4    1.4  1  TIGR01317 GOGAT_sm_gam: glutamate synthase, NADH/NADPH, small subunit
    8.9e-05   19.3   1.0      0.011   12.4   0.6    2.2  2  TIGR00275 TIGR00275: flavoprotein, HI0933 family
     0.0002   16.7   0.4    0.00028   16.2   0.3    1.1  1  TIGR03315 Se_ygfK: putative selenate reductase, YgfK subunit
    0.00031   17.7   1.7    0.00061   16.8   0.2    1.9  2  TIGR03364 HpnW_proposed: FAD dependent oxidoreductase TIGR03364
    0.00038   17.1   1.0    0.00038   17.1   0.7    1.8  2  TIGR01350 lipoamide_DH: dihydrolipoyl dehydrogenase
    0.00045   15.9   0.1    0.00068   15.3   0.1    1.1  1  TIGR01372 soxA: sarcosine oxidase, alpha subunit family
    0.00055   16.7   0.1    0.00079   16.2   0.1    1.1  1  TIGR01438 TGR: thioredoxin and glutathione reductase
     0.0017   15.3   0.3     0.0041   14.1   0.1    1.7  2  TIGR03197 MnmC_Cterm: tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain
     0.0026   14.4   0.8      0.017   11.7   0.2    2.0  2  TIGR01813 flavo_cyto_c: flavocytochrome c
      0.004   13.6   0.3     0.0061   13.0   0.2    1.2  1  TIGR01424 gluta_reduc_2: glutathione-disulfide reductase
     0.0045   13.6   1.8       0.11    9.0   0.1    2.1  2  TIGR02485 CobZ_N-term: precorrin 3B synthase CobZ
      0.005   13.7   0.3      0.005   13.7   0.2    1.4  2  TIGR03378 glycerol3P_GlpB: glycerol-3-phosphate dehydrogenase, anaerobic, B subunit
     0.0072   13.3   1.4       0.12    9.3   0.3    2.1  2  TIGR02352 thiamin_ThiO: glycine oxidase ThiO
  ------ inclusion threshold ------
      0.017   12.0   0.1      0.031   11.1   0.1    1.4  1  TIGR02023 BchP-ChlP: geranylgeranyl reductase
      0.018   11.4   0.8      0.031   10.6   0.5    1.3  1  TIGR03996 mycofact_OYE_1: mycofactocin system FadH/OYE family oxidoreductase 1
       0.02   11.7   0.0      0.029   11.1   0.0    1.2  1  TIGR00031 UDP-GALP_mutase: UDP-galactopyranose mutase
      0.021   12.3   5.6      0.019   12.5   0.7    2.8  4  TIGR02032 GG-red-SF: geranylgeranyl reductase family
      0.026   11.5   0.1      0.078    9.9   0.0    1.7  2  TIGR01790 carotene-cycl: lycopene cyclase family protein
      0.033   10.7   0.0       0.51    6.8   0.0    2.0  2  TIGR02731 phytoene_desat: phytoene desaturase
      0.035   10.5   0.1      0.055    9.8   0.1    1.2  1  TIGR01318 gltD_gamma_fam: glutamate synthase, small subunit
      0.035   10.7   0.0       0.14    8.8   0.0    1.9  2  TIGR01292 TRX_reduct: thioredoxin-disulfide reductase
       0.04   10.9   0.7      0.059   10.4   0.5    1.2  1  TIGR01421 gluta_reduc_1: glutathione-disulfide reductase
      0.052   10.1   2.2       0.13    8.9   0.2    2.1  2  TIGR01377 soxA_mon: sarcosine oxidase, monomeric form
      0.063    9.6   0.2        2.2    4.5   0.0    2.1  2  TIGR03140 AhpF: alkyl hydroperoxide reductase, F subunit
      0.065    9.7   1.0      0.071    9.6   0.1    1.4  2  TIGR00551 nadB: L-aspartate oxidase
       0.07    9.7   1.3       0.11    9.0   0.9    1.2  1  TIGR03026 NDP-sugDHase: nucleotide sugar dehydrogenase
      0.083    9.5   0.3       0.14    8.8   0.2    1.3  1  TIGR04018 Bthiol_YpdA: putative bacillithiol system oxidoreductase, YpdA family


Domain annotation for each model (and alignments):
>> TIGR02730  carot_isom: carotene isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.9   0.1   3.5e-12   4.1e-10       2      66 ..      78     145 ..      77     173 .. 0.83
   2 !  171.5   0.0   5.5e-53   6.4e-51     178     488 ..     269     601 ..     257     604 .. 0.84

  Alignments for each domain:
  == domain 1    score: 36.9 bits;  conditional E-value: 3.5e-12
  TIGR02730   2 daivigsgigglvtatqlaakgakvlvlekylipggsagyfer..eg..ykfdvgaslifgfgdkgttn 66 
                d++vigsg+ggl + +  a  g  v vle+++ pggsa  f r  +g  y f+vg s++ g+ +  + n
  MMETSP1137-20121227|773_1  78 DVVVIGSGMGGLACGALCAKYGHEVTVLESHIKPGGSAHTFSRmhNGgkYSFEVGPSIFEGLDK-PSYN 145
                99*************999999********************994423459*******9999854.4444 PP

  == domain 2    score: 171.5 bits;  conditional E-value: 5.5e-53
  TIGR02730 178 kyikdpellkfidiecfiwsvvpadltpminagmvlsdrhy.gginy..pkggvgeiaeklvkglekaggkirykarvtkiilendkavgvkladgekirakr.ivsnatrwdtfgkllkeenlpkkekkfrkaykkspsf...lslhlgvkadl..lpegtechhllledwen.lekeegtifvsiptlldpelapegyhiihtftp..ssledweglsp..kdyeakkeadaarlidrlekilpgldealdykevgtprshrrflgredgtygpi.......p.rrklkgllsmpfn..rtaidglycvgdstfpgqglnavafsgfacahrv 488
                + + +p l ++id  c  +   pa+   m    + + dr +  g  y  p gg  eia+ lv+gl+k+gg ++ +++v ++ +e ++avgv+l +g+ ira++ +vsnat +dt + l + ++lp+  +++r +  k p     + l + + a    l +  +  hl+++dwe+ l++ +      ip+lldp+++peg h+ih++++  +  e we l+p  ++y a ke+ a+ l + +e+ +p + +  +++ +g+p +h   l r+ gtyg         p +  +k ll++pf   +t +dgl   gds+fpg g  + a sg++ a  +
  MMETSP1137-20121227|773_1 269 QIVTEPFLRNWIDTMCI-FCGFPAK-GAMTAHILYILDRFFeEGACYcvPIGGTEEIAHTLVRGLKKFGGTLQMNTHVDQVXVEGGRAVGVRLKNGKVIRARKaVVSNATPFDTVKMLGEGDHLPEAVNEWRSSLGKLPRHgaiMHLFIAIDATDldLSHIQDPAHLIVQDWERsLQDSQNLCSFFIPSLLDPSVCPEGKHVIHVYSSggEPYEPWEKLTPgsDEYXAYKEERAEVLWKAVERCIPDVRQRQEFHIIGSPLAHEAXLRRDRGTYGMAwaagtaaPyAGLVKNLLPFPFPnlKTPVDGLLRCGDSCFPGIGTPSAAASGVIAANTL 601
                56778888899999994.4456664.4566667788899884466665599*************************************************975399****************************9999965211555556655431356678999*******96478888888899********************9732579******975469*************************************************97522221113123468899999953479**************************999765 PP

>> TIGR02734  crtI_fam: phytoene desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.7   0.1   3.8e-12   4.4e-10       1      54 [.      79     136 ..      79     142 .. 0.89
   2 !   58.6   0.0   8.4e-19   9.9e-17     159     488 ..     259     601 ..     247     609 .. 0.77

  Alignments for each domain:
  == domain 1    score: 36.7 bits;  conditional E-value: 3.8e-12
  TIGR02734   1 avViGaGlgGLAlAirLaaaGievtvlekrdkpGGRagvleed...G.frfDtGPtvi 54 
                +vViG+G+gGLA+ ++ a+ G+evtvle + kpGG a ++++    G + f +GP+++
  MMETSP1137-20121227|773_1  79 VVVIGSGMGGLACGALCAKYGHEVTVLESHIKPGGSAHTFSRMhngGkYSFEVGPSIF 136
                79**********************************987654434357*******986 PP

  == domain 2    score: 58.6 bits;  conditional E-value: 8.4e-19
  TIGR02734 159 alrsldkkvarfikderLrqilsfhalfvggnPf...kassiYalisaleleaGVwfprGGtsalvealaklaedlggelrlnaeveeietegerataveledgerlea.davvsnaDlvhtykkllreeerrrksekklsk..krlslslvv.lyfGlkGvegelpqlaHHtllfgerykelieeifkkselaedfslylvsptvtdpslAPegkeslyvLvPvphlga.....aadvdwskegerlrdrilaeleeralpdlrerivverlltPadfedelna.........alGsafslehtltQsaffRprnrsekvdnlylvGagThPGvGvPgvliSaklvakli 488
                 ++sl+++v++ + ++ Lr+ +    +f g       +a  +Y+l   +e  a    p+GGt+++++ l++  ++ gg+l++n++v+++ +eg+ra +v+l++g+ ++a +avvsna   +t k l +  +  ++ +++ s+  k +  ++++ l++ ++ ++  l++++    l+ +++++ +++  +  +        +  p+  dps+ Pegk+  +v +   +        +   d   + ++ r ++l +  er +pd+r+r +++ + +P  +e+ l           a+G+a   +  ++   +f   n +  vd+l   G    PG+G P+   S+ ++a+ +
  MMETSP1137-20121227|773_1 259 VFKSLHETVDQIVTEPFLRNWIDTMCIFCGFPAKgamTAHILYILDRFFEEGACYCVPIGGTEEIAHTLVRGLKKFGGTLQMNTHVDQVXVEGGRAVGVRLKNGKVIRArKAVVSNATPFDTVKMLGEGDHLPEAVNEWRSSlgKLPRHGAIMhLFIAIDATDLDLSHIQDPAHLIVQDWERSLQDSQNLCS--------FFIPSLLDPSVCPEGKHVIHVYSSGGEPYEpweklTPGSDEYXAYKEERAEVLWKAVERCIPDVRQRQEFHIIGSPLAHEAXLRRdrgtygmawAAGTAAPYAGLVKNLLPFPFPNLKTPVDGLLRCGDSCFPGIGTPSAAASGVIAANTL 601
                589**************************9865511144456777777777777777**************************************************98469************999876644444333332114555566552455788888888888888889999**999987433322........4458999**************985442222342233444444444555667777778899******************999876411111111134566666777888899999*****************************99999876 PP

>> TIGR02733  desat_CrtD: C-3',4' desaturase CrtD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.3   0.0   8.6e-15     1e-12       3      62 ..      78     141 ..      76     162 .. 0.89
   2 !   42.1   0.0   8.5e-14   9.9e-12     234     486 ..     323     599 ..     317     604 .. 0.78

  Alignments for each domain:
  == domain 1    score: 45.3 bits;  conditional E-value: 8.6e-15
  TIGR02733   3 svvviGaGiaGltaaallakrGlevtlleaaaqvGGCastfkr....rgfifdvGatqvaGlep 62 
                +vvviG+G++Gl+++al ak G evt+le++ ++GG a tf r    +++ f+vG     Gl++
  MMETSP1137-20121227|773_1  78 DVVVIGSGMGGLACGALCAKYGHEVTVLESHIKPGGSAHTFSRmhngGKYSFEVGPSIFEGLDK 141
                79***************************************99555457******999999876 PP

  == domain 2    score: 42.1 bits;  conditional E-value: 8.5e-14
  TIGR02733 234 lsdrlvealkkdggelllgqrveaietkeekaeakvvvdsrkkekeevkaddvvanlpaqsllelle....eaalskgyrkrlkklpepsGalvlylavkkaalpv...dcpphlqflsdeqG........slfvsvskegdgraPkGeatl..iassftdvdeWssle..eedytakkkeytktilerleekfdleeeelvhkelatPrtferytarpeGivG.....Glgqr......lstfGpfglas.rtPlkglWlvGdsiyPGeGtaGvsysalavvr 486
                ++ +lv +lkk gg l ++ +v+++ ++ ++a++++ ++ +  +    + + vv n ++ + +++l+      ++ +++r +l klp+    + l+ a+++++l     + p+hl + + e+         s+f+  s  +    P+G++ +   +s     ++W +l   + +y a k+e ++ + +++e+ +   +++ + + ++ P + e    r++G  G     G          ++++ pf + + +tP++gl  +Gds +PG Gt   + s + +++
  MMETSP1137-20121227|773_1 323 IAHTLVRGLKKFGGTLQMNTHVDQVXVEGGRAVGVRLKNGKVIR----ARKAVVSNATPFDTVKMLGegdhLPEAVNEWRSSLGKLPRHGAIMHLFIAIDATDLDLshiQDPAHLIVQDWERSlqdsqnlcSFFIP-SLLDPSVCPEGKHVIhvYSSGGEPYEPWEKLTpgSDEYXAYKEERAEVLWKAVERCIPDVRQRQEFHIIGSPLAHEAXLRRDRGTYGmawaaG--TAapyaglVKNLLPFPFPNlKTPVDGLLRCGDSCFPGIGTPSAAASGVIAAN 599
                67789**********************99999998877763322....334688999999999999844323456789**********999999********9975211468898765544446677779888885.77788899**99876314566677899*998644799********************99999999999***************9987443222..321111224567799998769*******************999988887765 PP

>> TIGR03467  HpnE: squalene-associated FAD-dependent desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.6   0.8   5.2e-08   6.1e-06       1      43 [.      79     121 ..      79     126 .. 0.94
   2 !    8.2   0.0    0.0025      0.29     210     284 ..     323     399 ..     306     404 .. 0.80

  Alignments for each domain:
  == domain 1    score: 23.6 bits;  conditional E-value: 5.2e-08
  TIGR03467   1 vvvvGgGlAGLaAAveLaraGvrvtllEarrqlGGRarsfedg 43 
                vvv+G G+ GLa+++  a+ G +vt+lE+  + GG a  f + 
  MMETSP1137-20121227|773_1  79 VVVIGSGMGGLACGALCAKYGHEVTVLESHIKPGGSAHTFSRM 121
                89***********************************999875 PP

  == domain 2    score: 8.2 bits;  conditional E-value: 0.0025
  TIGR03467 210 fvepaarylesrggevrlgtrvreleasaggiralveaaeetlaadavvl..Avpperaasllpeedlaaklaales 284
                + + ++r l++ gg ++++t+v ++ +++g++      +++   a ++v+  A+p++ ++ l ++ +l +++++++s
  MMETSP1137-20121227|773_1 323 IAHTLVRGLKKFGGTLQMNTHVDQVXVEGGRAVGVRLKNGKVIRARKAVVsnATPFDTVKMLGEGDHLPEAVNEWRS 399
                56678999********************9995543344666666666665569******999999888888888765 PP

>> TIGR01316  gltA: glutamate synthase (NADPH), homotetrameric
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.8   0.7   3.1e-08   3.6e-06     134     171 ..      77     114 ..      71     118 .. 0.92

  Alignments for each domain:
  == domain 1    score: 23.8 bits;  conditional E-value: 3.1e-08
  TIGR01316 134 kkvaviGaGpaGlavaselakkGhevtvfealhkpGGv 171
                  v viG+G  Gla+ +  ak Ghevtv e+  kpGG 
  MMETSP1137-20121227|773_1  77 VDVVVIGSGMGGLACGALCAKYGHEVTVLESHIKPGGS 114
                6799********************************95 PP

>> TIGR00292  TIGR00292: thiazole biosynthesis enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.5   0.2   5.2e-08   6.2e-06      21      60 ..      76     115 ..      73     124 .. 0.92

  Alignments for each domain:
  == domain 1    score: 23.5 bits;  conditional E-value: 5.2e-08
  TIGR00292  21 esDviivGaGpsGLtaayylakeglkvvvlerklaiGGGs 60 
                e Dv+++G+G  GL+++   ak g  v vle+++ +GG  
  MMETSP1137-20121227|773_1  76 EVDVVVIGSGMGGLACGALCAKYGHEVTVLESHIKPGGSA 115
                78***********************************976 PP

>> TIGR00562  proto_IX_ox: protoporphyrinogen oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.5   0.1   6.8e-08     8e-06       3      66 ..      77     142 ..      75     161 .. 0.83

  Alignments for each domain:
  == domain 1    score: 22.5 bits;  conditional E-value: 6.8e-08
  TIGR00562   3 kkvvvvGgGisGLciayalekerpdvelvlvEakdRvGGkiyT..rkesG..yllEkGprtlleskeg 66 
                 +vvv+G+G+ GL+     +k   + e++++E++ + GG  +T  r ++G  y +E+Gp  + + ++ 
  MMETSP1137-20121227|773_1  77 VDVVVIGSGMGGLACGALCAKY--GHEVTVLESHIKPGGSAHTfsRMHNGgkYSFEVGPSIFEGLDKP 142
                58**************999999..9*****************633677888*********99987764 PP

>> TIGR03997  mycofact_OYE_2: mycofactocin system FadH/OYE family oxidoreductase 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   0.3     3e-07   3.5e-05     381     426 ..      78     123 ..      70     131 .. 0.89

  Alignments for each domain:
  == domain 1    score: 20.2 bits;  conditional E-value: 3e-07
  TIGR03997 381 kvlvvGgGPaGleaaataarrGhrvtllereeelGGqvklaaklpg 426
                 v+v+G+G +Gl+  a  a+ Gh+vt+le + ++GG  ++ +++  
  MMETSP1137-20121227|773_1  78 DVVVIGSGMGGLACGALCAKYGHEVTVLESHIKPGGSAHTFSRMHN 123
                69**********************************9999887755 PP

>> TIGR01317  GOGAT_sm_gam: glutamate synthase, NADH/NADPH, small subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.4   1.5e-06   0.00018     145     180 ..      78     113 ..      68     117 .. 0.92

  Alignments for each domain:
  == domain 1    score: 18.3 bits;  conditional E-value: 1.5e-06
  TIGR01317 145 kvavvGsGPaGlaaadqlnraGhtvtvferedrvGG 180
                 v v+GsG  Gla+ +  ++ Gh+vtv e + + GG
  MMETSP1137-20121227|773_1  78 DVVVIGSGMGGLACGALCAKYGHEVTVLESHIKPGG 113
                699***************************999998 PP

>> TIGR00275  TIGR00275: flavoprotein, HI0933 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.4   0.6   9.3e-05     0.011       1      33 [.      79     111 ..      79     113 .. 0.92
   2 ?    4.6   0.0     0.022       2.5     106     156 ..     321     373 ..     308     377 .. 0.91

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 9.3e-05
  TIGR00275   1 viiiGgGaaGlmaAitaaeegakVlllEknkki 33 
                v++iG G  Gl + + +a+ g++V++lE++ k 
  MMETSP1137-20121227|773_1  79 VVVIGSGMGGLACGALCAKYGHEVTVLESHIKP 111
                79**************************97665 PP

  == domain 2    score: 4.6 bits;  conditional E-value: 0.022
  TIGR00275 106 ksvldaLlkelkelgvevlteskvksi.kkeeekfevet.ekkeleakkvila 156
                +++ ++L + lk+ g +++++++v ++  +  + ++v++ ++k ++a k +++
  MMETSP1137-20121227|773_1 321 EEIAHTLVRGLKKFGGTLQMNTHVDQVxVEGGRAVGVRLkNGKVIRARKAVVS 373
                7899***********************99999*******99999999998886 PP

>> TIGR03315  Se_ygfK: putative selenate reductase, YgfK subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.3   2.4e-06   0.00028     537     576 ..      76     115 ..      67     119 .. 0.90

  Alignments for each domain:
  == domain 1    score: 16.2 bits;  conditional E-value: 2.4e-06
  TIGR03315 537 khkvaviGaGPaGlsagyflaraGlpvtvfekkekagGvv 576
                +  v viG+G  Gl+ g + a+ G++vtv+e + k+gG  
  MMETSP1137-20121227|773_1  76 EVDVVVIGSGMGGLACGALCAKYGHEVTVLESHIKPGGSA 115
                45799********************************975 PP

>> TIGR03364  HpnW_proposed: FAD dependent oxidoreductase TIGR03364
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.2   5.2e-06   0.00061       2      38 ..      78     114 ..      77     122 .. 0.94
   2 ?   -0.5   0.0      0.91   1.1e+02     160     199 ..     335     380 ..     321     383 .. 0.78

  Alignments for each domain:
  == domain 1    score: 16.8 bits;  conditional E-value: 5.2e-06
  TIGR03364   2 dvvvvGaGivGlahAlaaarrGlkVtvierssraaGA 38 
                dvvv+G+G+ Gla  +  a+ G++Vtv+e + ++ G+
  MMETSP1137-20121227|773_1  78 DVVVIGSGMGGLACGALCAKYGHEVTVLESHIKPGGS 114
                9*****************************9999886 PP

  == domain 2    score: -0.5 bits;  conditional E-value: 0.91
  TIGR03364 160 gveflwntavtevets.....tvrtsrGevh.aeqvlVcsgadfet 199
                g ++++nt v +v  +      vr ++G+v  a++ +V + + f+t
  MMETSP1137-20121227|773_1 335 GGTLQMNTHVDQVXVEggravGVRLKNGKVIrARKAVVSNATPFDT 380
                55778889998885555677799********9******99887776 PP

>> TIGR01350  lipoamide_DH: dihydrolipoyl dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.7   3.3e-06   0.00038       2      37 ..      77     113 ..      76     116 .. 0.91
   2 ?   -1.6   0.1       1.5   1.7e+02     212     260 ..     322     369 ..     319     383 .. 0.50

  Alignments for each domain:
  == domain 1    score: 17.1 bits;  conditional E-value: 3.3e-06
  TIGR01350   2 ydvvviGgGpgGYvaAiraaqlglkvalvek.eklGG 37 
                +dvvviG+G gG  +   +a+ g +v+++e   k GG
  MMETSP1137-20121227|773_1  77 VDVVVIGSGMGGLACGALCAKYGHEVTVLEShIKPGG 113
                7*****************************9567777 PP

  == domain 2    score: -1.6 bits;  conditional E-value: 1.5
  TIGR01350 212 evskvlkkklkkkgvkiltnakvtevekeedevv.veakkkevetleaek 260
                e++++l + lkk g ++ +n++v +v  e  + v v+ k++  ++++a k
  MMETSP1137-20121227|773_1 322 EIAHTLVRGLKKFGGTLQMNTHVDQVXVEGGRAVgVRLKNG--KVIRARK 369
                55555555555555555555555555444433332444433..2333333 PP

>> TIGR01372  soxA: sarcosine oxidase, alpha subunit family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.1   5.8e-06   0.00068     169     211 ..      77     119 ..      74     131 .. 0.89

  Alignments for each domain:
  == domain 1    score: 15.3 bits;  conditional E-value: 5.8e-06
  TIGR01372 169 cDvLvvGaGpaGLaaAraAaraGarvilvdeqaeaGGsllsea 211
                 Dv+v+G+G  GLa     a+ G  v++++ + + GGs ++ +
  MMETSP1137-20121227|773_1  77 VDVVVIGSGMGGLACGALCAKYGHEVTVLESHIKPGGSAHTFS 119
                6*************************************98766 PP

>> TIGR01438  TGR: thioredoxin and glutathione reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.1   6.7e-06   0.00079       3      40 ..      77     115 ..      75     124 .. 0.86

  Alignments for each domain:
  == domain 1    score: 16.2 bits;  conditional E-value: 6.7e-06
  TIGR01438   3 ydliviGgGsGGlaaakeaaklgakvllld.fvkptpqG 40 
                 d++viG+G GGla+    ak+g +v +l+ ++kp    
  MMETSP1137-20121227|773_1  77 VDVVVIGSGMGGLACGALCAKYGHEVTVLEsHIKPGGSA 115
                69*************************997357887655 PP

>> TIGR03197  MnmC_Cterm: tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.1   3.5e-05    0.0041       1      38 [.      78     115 ..      78     122 .. 0.91
   2 ?   -3.1   0.0       5.5   6.4e+02     151     204 ..     324     379 ..     320     384 .. 0.74

  Alignments for each domain:
  == domain 1    score: 14.1 bits;  conditional E-value: 3.5e-05
  TIGR03197   1 kvavIGaGiAgaalalsLarrGvqvtllekdeklaqgA 38 
                +v+vIG G+ g+a+   +a+ G++vt+le++ k++  A
  MMETSP1137-20121227|773_1  78 DVVVIGSGMGGLACGALCAKYGHEVTVLESHIKPGGSA 115
                589****************************9998544 PP

  == domain 2    score: -3.1 bits;  conditional E-value: 5.5
  TIGR03197 151 vkallakaki.elklhfnteitslerdaeg.WqllsengevlaasvvVlAngaqak 204
                +++l++  k+ + +l++nt++ ++  ++ +   +  +ng+v+ a+  V+ n+  ++
  MMETSP1137-20121227|773_1 324 AHTLVRGLKKfGGTLQMNTHVDQVXVEGGRaVGVRLKNGKVIRARKAVVSNATPFD 379
                55555555555667889999999987666657788899999999999999987665 PP

>> TIGR01813  flavo_cyto_c: flavocytochrome c
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.7   0.2   0.00015     0.017       1      40 [.      78     116 ..      78     128 .. 0.87
   2 ?    0.8   0.0      0.28        33     131     185 ..     322     372 ..     316     431 .. 0.83

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 0.00015
  TIGR01813   1 dvvvvGsGlAGlsaaleakkaglaevvvleKapviGGNsa 40 
                dvvv+GsG+ Gl+ +    k g +ev vle     GG + 
  MMETSP1137-20121227|773_1  78 DVVVIGSGMGGLACGALCAKYG-HEVTVLESHIKPGGSAH 116
                8*************99999999.9******9998888665 PP

  == domain 2    score: 0.8 bits;  conditional E-value: 0.28
  TIGR01813 131 eivqklskkakkegvelrlnskvedlikddqgqvtGvkvkekgkkikikaakaVv 185
                ei ++l++ +kk g +l++n++v ++   + g+ +Gv  k+      i a+kaVv
  MMETSP1137-20121227|773_1 322 EIAHTLVRGLKKFGGTLQMNTHVDQVXV-EGGRAVGVRLKNG---KVIRARKAVV 372
                78999******************99998.6679999998753...3455556665 PP

>> TIGR01424  gluta_reduc_2: glutathione-disulfide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   0.2   5.2e-05    0.0061       3      36 ..      77     110 ..      76     117 .. 0.88

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 5.2e-05
  TIGR01424   3 ydlfviGaGsGGvraarlaaalGakvaiaeedlv 36 
                 d+ viG+G GG++++ l+a++G  v++ e ++ 
  MMETSP1137-20121227|773_1  77 VDVVVIGSGMGGLACGALCAKYGHEVTVLESHIK 110
                5999*************************98764 PP

>> TIGR02485  CobZ_N-term: precorrin 3B synthase CobZ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.0   0.1   0.00095      0.11       2      44 ..      77     116 ..      76     123 .. 0.76
   2 ?    3.9   0.1     0.035       4.2     123     183 ..     316     373 ..     311     382 .. 0.89

  Alignments for each domain:
  == domain 1    score: 9.0 bits;  conditional E-value: 0.00095
  TIGR02485   2 vdvlviGgGlagl.CaaiearraGasvllleaaPrdlrGGnarh 44 
                vdv+viG+G+ gl C a+  ++ G  v +le+  ++   G ++h
  MMETSP1137-20121227|773_1  77 VDVVVIGSGMGGLaCGALC-AKYGHEVTVLESHIKP---GGSAH 116
                8***********9566665.567999*****96443...44445 PP

  == domain 2    score: 3.9 bits;  conditional E-value: 0.035
  TIGR02485 123 llGGGkalvnalyasaerlGveiryeaeveriereedgratiaarlaaaderiatkavvla 183
                ++GG + +  +l +  +++G  ++++++v+++    +g++ +++rl  +++ i+++  v++
  MMETSP1137-20121227|773_1 316 PIGGTEEIAHTLVRGLKKFGGTLQMNTHVDQVXV--EGGRAVGVRL-KNGKVIRARKAVVS 373
                689999999************************9..899999***9.99999*99887775 PP

>> TIGR03378  glycerol3P_GlpB: glycerol-3-phosphate dehydrogenase, anaerobic, B subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   0.2   4.3e-05     0.005       2      39 ..      78     119 ..      77     121 .. 0.79
   2 ?   -3.4   0.0       6.8   7.9e+02     268     316 ..     326     372 ..     323     378 .. 0.74

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 4.3e-05
  TIGR03378   2 DviiiGgGlaGlscalrlaeaGkktaiiaa....GqsalhFs 39 
                Dv++iG+G+ Gl+c+  +a+ G+ + ++ +    G sa  Fs
  MMETSP1137-20121227|773_1  78 DVVVIGSGMGGLACGALCAKYGHEVTVLEShikpGGSAHTFS 119
                9**********************9998653222266666665 PP

  == domain 2    score: -3.4 bits;  conditional E-value: 6.8
  TIGR03378 268 alkrrFeklGGvllkgdevlraeleenrvariftrnhedipleakqfvl 316
                +l r  +k GG+l    +v ++ +e+ r   +  +n     ++a+++v+
  MMETSP1137-20121227|773_1 326 TLVRGLKKFGGTLQMNTHVDQVXVEGGRAVGVRLKN--GKVIRARKAVV 372
                566778899999999999999999999877665555..45677777776 PP

>> TIGR02352  thiamin_ThiO: glycine oxidase ThiO
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.3   0.3     0.001      0.12       1      35 [.      79     114 ..      79     119 .. 0.85
   2 ?    2.8   0.0     0.094        11     151     202 ..     321     373 ..     319     385 .. 0.85

  Alignments for each domain:
  == domain 1    score: 9.3 bits;  conditional E-value: 0.001
  TIGR02352   1 vlviGgGviGlsvAveLakrghkvtllekd.evgsg 35 
                v+viG G+ Gl+ +   ak gh+vt+le++ + g+ 
  MMETSP1137-20121227|773_1  79 VVVIGSGMGGLACGALCAKYGHEVTVLESHiKPGGS 114
                79**************************99443333 PP

  == domain 2    score: 2.8 bits;  conditional E-value: 0.094
  TIGR02352 151 rellkaLvkaleklGveiieevevqeieargekvtavktssekv.qadqvvla 202
                +e++++Lv++l+k G++++ +++v ++  +g ++++v+ +++kv  a + v++
  MMETSP1137-20121227|773_1 321 EEIAHTLVRGLKKFGGTLQMNTHVDQVXVEGGRAVGVRLKNGKViRARKAVVS 373
                67899********************************9888854155555555 PP

>> TIGR02023  BchP-ChlP: geranylgeranyl reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.1   0.00027     0.031       2      42 ..      78     115 ..      77     123 .. 0.92

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 0.00027
  TIGR02023   2 dvlviGggpsGaaaaetLakagievillerelarikPCGGa 42 
                dv+viG+g +G a     ak g+ev +le +   ikP G a
  MMETSP1137-20121227|773_1  78 DVVVIGSGMGGLACGALCAKYGHEVTVLESH---IKPGGSA 115
                9****************************88...9**9987 PP

>> TIGR03996  mycofact_OYE_1: mycofactocin system FadH/OYE family oxidoreductase 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.5   0.00026     0.031     372     417 ..      76     121 ..      67     131 .. 0.90

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 0.00026
  TIGR03996 372 pgdvlvvGGGpaGleaarvlavrGhrvtlaeasarlGGmvriaarg 417
                 +dv+v+G G  Gl    + a  Gh+vt+ e+  + GG   +++r 
  MMETSP1137-20121227|773_1  76 EVDVVVIGSGMGGLACGALCAKYGHEVTVLESHIKPGGSAHTFSRM 121
                589************************************9999985 PP

>> TIGR00031  UDP-GALP_mutase: UDP-galactopyranose mutase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00025     0.029       3      60 ..      78     137 ..      76     148 .. 0.83

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 0.00025
  TIGR00031   3 dyiivGaGlsGivlaeilaklnkrvlvvekrnhiGGncyd..evdekgllvhkyGphifh 60 
                d++++G+G+ G  +    ak++++v v+e   + GG +++  ++ ++g    + Gp if 
  MMETSP1137-20121227|773_1  78 DVVVIGSGMGGLACGALCAKYGHEVTVLESHIKPGGSAHTfsRMHNGGKYSFEVGPSIFE 137
                899*********************************986521555667777777777775 PP

>> TIGR02032  GG-red-SF: geranylgeranyl reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.7   0.00016     0.019       2      35 ..      78     111 ..      77     115 .. 0.93
   2 ?    0.0   0.0         1   1.2e+02     195     212 ..     171     187 ..     154     239 .. 0.64
   3 ?   -2.5   0.0       5.9   6.9e+02      95     137 ..     325     366 ..     322     374 .. 0.75
   4 ?   -2.0   0.0       4.3     5e+02     250     296 ..     559     600 ..     552     601 .. 0.80

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 0.00016
  TIGR02032   2 DvvvvGaGpaGssaAlrlakkGlrVlllekkelp 35 
                Dvvv+G G  G + ++  ak G++V +le + +p
  MMETSP1137-20121227|773_1  78 DVVVIGSGMGGLACGALCAKYGHEVTVLESHIKP 111
                *****************************98666 PP

  == domain 2    score: 0.0 bits;  conditional E-value: 1
  TIGR02032 195 pggYgWvfPkgdgtanvG 212
                p+gY W+fP gd+  +v 
  MMETSP1137-20121227|773_1 171 PQGY-WRFPIGDDSEKVN 187
                5666.*******977763 PP

  == domain 3    score: -2.5 bits;  conditional E-value: 5.9
  TIGR02032  95 elLaekAqeagaelllettvlsveied.ekvkvevredekkevt 137
                + L++  ++ g +l ++t+v +v +e+ ++v v+++++  k ++
  MMETSP1137-20121227|773_1 325 HTLVRGLKKFGGTLQMNTHVDQVXVEGgRAVGVRLKNG--KVIR 366
                5788888999999999****999999877777777765..3344 PP

  == domain 4    score: -2.0 bits;  conditional E-value: 4.3
  TIGR02032 250 liPirradektvtgnvllvGDAAglVkPltGeGIayamvagklAaev 296
                l+P+  ++ kt  +++l +GD+      + G G + a+ +g +Aa++
  MMETSP1137-20121227|773_1 559 LLPFPFPNLKTPVDGLLRCGDS-----CFPGIGTPSAAASGVIAANT 600
                5788888888888888888886.....47788899999999999986 PP

>> TIGR01790  carotene-cycl: lycopene cyclase family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.0   0.00066     0.078       1      41 [.      78     119 ..      78     123 .. 0.87
   2 ?   -2.1   0.0       3.1   3.6e+02     100     135 ..     338     373 ..     325     425 .. 0.77

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 0.00066
  TIGR01790   1 DliviGgGlAglaiAlelakpglrvqlieaapk.lpfnntyg 41 
                D++viG+G+ gla  +  ak g +v ++e++ k  +  +t++
  MMETSP1137-20121227|773_1  78 DVVVIGSGMGGLACGALCAKYGHEVTVLESHIKpGGSAHTFS 119
                9****************************9987344457776 PP

  == domain 2    score: -2.1 bits;  conditional E-value: 3.1
  TIGR01790 100 lwleakaikveadavslslvecaggqriqarlVida 135
                l ++  +++v  ++ +   v  ++g++i+ar  +++
  MMETSP1137-20121227|773_1 338 LQMNTHVDQVXVEGGRAVGVRLKNGKVIRARKAVVS 373
                566788999999999999999999999999965543 PP

>> TIGR02731  phytoene_desat: phytoene desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   0.0    0.0043      0.51       2      41 ..      79     118 ..      78     150 .. 0.80
   2 ?    1.6   0.0      0.16        19     188     279 ..     299     383 ..     290     392 .. 0.68

  Alignments for each domain:
  == domain 1    score: 6.8 bits;  conditional E-value: 0.0043
  TIGR02731   2 vaiagaglaglsaakyladaghtpivleardvlggkvaaw 41 
                v++ g+g+ gl++    a  gh   vle++   gg   ++
  MMETSP1137-20121227|773_1  79 VVVIGSGMGGLACGALCAKYGHEVTVLESHIKPGGSAHTF 118
                899*************************998888876655 PP

  == domain 2    score: 1.6 bits;  conditional E-value: 0.16
  TIGR02731 188 vltalnrflqerygsklafldgapperlcqpivdyitsrggevrlnarlkeivlnedgsvkafaladlegkesfevtadayvsalavdilkl 279
                +l  l+rf++e     +       +e + + +v  +++ gg +++n+++ ++ ++   +v    l++++    ++    +   a++ d++k+
  MMETSP1137-20121227|773_1 299 ILYILDRFFEEGACYCVP---IGGTEEIAHTLVRGLKKFGGTLQMNTHVDQVXVEGGRAVG-VRLKNGKV---IRARKAVVSNATPFDTVKM 383
                556677777664433332...234789999**********************998877764.55666552...2222222234666666665 PP

>> TIGR01318  gltD_gamma_fam: glutamate synthase, small subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.1   0.00047     0.055     143     178 ..      78     113 ..      73     119 .. 0.90

  Alignments for each domain:
  == domain 1    score: 9.8 bits;  conditional E-value: 0.00047
  TIGR01318 143 rvaviGaGpaGlacadvlaraGvkvvvfdrypeiGG 178
                 v viG+G  Glac  + a+ G +v+v + + + GG
  MMETSP1137-20121227|773_1  78 DVVVIGSGMGGLACGALCAKYGHEVTVLESHIKPGG 113
                699**************************9998887 PP

>> TIGR01292  TRX_reduct: thioredoxin-disulfide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   0.0    0.0012      0.14       2      46 ..      78     123 ..      77     133 .. 0.83
   2 ?   -1.4   0.0       1.5   1.7e+02     261     295 ..     567     600 ..     565     603 .. 0.79

  Alignments for each domain:
  == domain 1    score: 8.8 bits;  conditional E-value: 0.0012
  TIGR01292   2 dviiiGaGpaGltaaiYaaranlktllieg.keaggqltttteven 46 
                dv++iG+G +Gl+ +   a+++ ++ ++e+  ++gg   t + + n
  MMETSP1137-20121227|773_1  78 DVVVIGSGMGGLACGALCAKYGHEVTVLEShIKPGGSAHTFSRMHN 123
                9**************9999999997777751577888777766665 PP

  == domain 2    score: -1.4 bits;  conditional E-value: 1.5
  TIGR01292 261 mrTsveGvfaaGDvrdkslrQvvtaagdGaiAals 295
                 +T v+G+  +GD +         aa++G+iAa++
  MMETSP1137-20121227|773_1 567 LKTPVDGLLRCGDSCFPG-IGTPSAAASGVIAANT 600
                589999999999987744.4567899999999986 PP

>> TIGR01421  gluta_reduc_1: glutathione-disulfide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.5    0.0005     0.059       3      35 ..      77     109 ..      75     117 .. 0.88

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 0.0005
  TIGR01421   3 ydylviGGGsGGiasarraaeyGakallveekk 35 
                 d++viG G GG+a     a+yG ++ ++e++ 
  MMETSP1137-20121227|773_1  77 VDVVVIGSGMGGLACGALCAKYGHEVTVLESHI 109
                699***************************984 PP

>> TIGR01377  soxA_mon: sarcosine oxidase, monomeric form
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   0.2    0.0011      0.13       2      47 ..      78     121 ..      77     125 .. 0.91
   2 ?    0.2   0.0      0.46        54     156     196 ..     332     374 ..     321     384 .. 0.80

  Alignments for each domain:
  == domain 1    score: 8.9 bits;  conditional E-value: 0.0011
  TIGR01377   2 DvivvGaGvmGsaaayqLakrgkkvLLleqfdlphsrGsshGesri 47 
                Dv+v+G+G+ G a++   ak g++v +le+   p   Gs h  sr+
  MMETSP1137-20121227|773_1  78 DVVVIGSGMGGLACGALCAKYGHEVTVLESHIKP--GGSAHTFSRM 121
                9****************************98776..6899988885 PP

  == domain 2    score: 0.2 bits;  conditional E-value: 0.46
  TIGR01377 156 ealGaivrdgtkvveikrd.ellvtvktkkks.yqakklvvta 196
                +++G++++ +t+v ++ ++ +  v v+ k+++  +a+k vv+ 
  MMETSP1137-20121227|773_1 332 KKFGGTLQMNTHVDQVXVEgGRAVGVRLKNGKvIRARKAVVSN 374
                6789***********9998567899999876625799999875 PP

>> TIGR03140  AhpF: alkyl hydroperoxide reductase, F subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.1      0.06         7     211     245 ..      75     109 ..      66     123 .. 0.85
   2 ?    4.5   0.0     0.019       2.2     266     335 ..     320     390 ..     312     395 .. 0.84

  Alignments for each domain:
  == domain 1    score: 2.9 bits;  conditional E-value: 0.06
  TIGR03140 211 ekydvlvvGgGPagaaaaiyaarkGlkvalvaeri 245
                 + dv+v+G+G  g a    +a+ G +v+++ ++i
  MMETSP1137-20121227|773_1  75 GEVDVVVIGSGMGGLACGALCAKYGHEVTVLESHI 109
                578**************************998877 PP

  == domain 2    score: 4.5 bits;  conditional E-value: 0.019
  TIGR03140 266 Gsklaanleehikeynidvleeqkvkkieteee.akevelesGevlkaksvivatGakWrelgvpGekeyl 335
                  ++a+ l + +k++  ++  +++v ++  e++ a  v+l++G+v++a+  +v+    +  + + Ge ++l
  MMETSP1137-20121227|773_1 320 TEEIAHTLVRGLKKFGGTLQMNTHVDQVXVEGGrAVGVRLKNGKVIRARKAVVSNATPFDTVKMLGEGDHL 390
                4678999999999999999999******966551678******************9999999999998765 PP

>> TIGR00551  nadB: L-aspartate oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.1    0.0006     0.071       2      33 ..      76     108 ..      75     120 .. 0.79
   2 ?   -3.8   0.1       7.1   8.3e+02     148     176 ..     340     368 ..     322     373 .. 0.70

  Alignments for each domain:
  == domain 1    score: 9.6 bits;  conditional E-value: 0.0006
  TIGR00551   2 eadvvviGsGaagLsa.alalaekyrvvvlska 33 
                e+dvvviGsG+ gL+  al+++  ++v+vl  +
  MMETSP1137-20121227|773_1  76 EVDVVVIGSGMGGLACgALCAKYGHEVTVLESH 108
                689***********974788888888***9766 PP

  == domain 2    score: -3.8 bits;  conditional E-value: 7.1
  TIGR00551 148 erevaldllietgrvvGvlvvesetvevl 176
                 ++ + ++ +e+gr vGv +++ + +  +
  MMETSP1137-20121227|773_1 340 MNTHVDQVXVEGGRAVGVRLKNGKVIRAR 368
                55667889999999999999985554443 PP

>> TIGR03026  NDP-sugDHase: nucleotide sugar dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   0.9   0.00095      0.11       2      31 ..      78     107 ..      77     110 .. 0.92

  Alignments for each domain:
  == domain 1    score: 9.0 bits;  conditional E-value: 0.00095
  TIGR03026   2 kiavvGlGYvGlplaallaekgheVvgvDi 31 
                +++v+G G  Gl+++al a+ gheV++++ 
  MMETSP1137-20121227|773_1  78 DVVVIGSGMGGLACGALCAKYGHEVTVLES 107
                589***********************9986 PP

>> TIGR04018  Bthiol_YpdA: putative bacillithiol system oxidoreductase, YpdA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   0.2    0.0012      0.14       1      30 [.      78     107 ..      78     110 .. 0.95

  Alignments for each domain:
  == domain 1    score: 8.8 bits;  conditional E-value: 0.0012
  TIGR04018   1 dviiiGaGPiGlaaaieakkaglsyliiek 30 
                dv++iG+G  Gla++  + k g +++++e 
  MMETSP1137-20121227|773_1  78 DVVVIGSGMGGLACGALCAKYGHEVTVLES 107
                89*************************996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (657 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       177  (0.0431497); expected 82.0 (0.02)
Passed bias filter:                      175  (0.0426621); expected 82.0 (0.02)
Passed Vit filter:                        71  (0.0173086); expected 4.1 (0.001)
Passed Fwd filter:                        35  (0.00853242); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              35  [number of targets reported over threshold]
# CPU time: 0.76u 0.19s 00:00:00.95 Elapsed: 00:00:01.01
# Mc/sec: 858.58
//
Query:       MMETSP1137-20121227|775_1  [L=342]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (342 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        70  (0.0170648); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.15s 00:00:00.39 Elapsed: 00:00:01.25
# Mc/sec: 361.12
//
Query:       MMETSP1137-20121227|776_1  [L=178]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (178 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       108  (0.0263286); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.16s 00:00:00.33 Elapsed: 00:00:00.73
# Mc/sec: 321.84
//
Query:       MMETSP1137-20121227|777_1  [L=485]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (485 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       272  (0.0663091); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.15s 00:00:00.51 Elapsed: 00:00:00.53
# Mc/sec: 1207.82
//
Query:       MMETSP1137-20121227|778_1  [L=321]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-09   35.0   1.3     0.0022   14.5   0.3    3.4  3  TIGR01137 cysta_beta: cystathionine beta-synthase
    1.2e-08   32.7   3.1    7.7e-05   20.2   0.5    2.5  3  TIGR00393 kpsF: sugar isomerase, KpsF/GutQ family
    8.8e-08   29.2   1.7     0.0099   12.6   0.1    3.9  2  TIGR01302 IMP_dehydrog: inosine-5'-monophosphate dehydrogenase
    9.3e-05   19.5   4.2       0.42    7.5   0.4    3.6  3  TIGR01186 proV: glycine betaine/L-proline transport ATP binding subunit


Domain annotation for each model (and alignments):
>> TIGR01137  cysta_beta: cystathionine beta-synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.7   0.0   0.00053      0.54     347     413 ..      25      96 ..      16     111 .. 0.72
   2 !   14.5   0.3   2.2e-06    0.0022     341     422 ..     108     189 ..      81     221 .. 0.79
   3 !   11.4   0.0     2e-05      0.02     345     394 ..     268     318 ..     246     321 .] 0.84

  Alignments for each domain:
  == domain 1    score: 6.7 bits;  conditional E-value: 0.00053
  TIGR01137 347 alvtvketetvadaieilrekGfdqlPvvk...eagkvlgsvtlrellsallakka.kledavk.kklskkl 413
                +lv+  +  t++da+e +r   ++ lPv     ea +++g++ l+++++ +++ +  kl ++ + kk+s+++
  MMETSP1137-20121227|778_1  25 PLVSCYAGDTCKDALEKMRTTNLSCLPVFGsasEADNLVGLIDLSDIVNLVAKMHWnKLRNSTEhKKFSADW 96 
                67899999********************98777889999999999887755443320223333225555555 PP

  == domain 2    score: 14.5 bits;  conditional E-value: 2.2e-06
  TIGR01137 341 kdlalkalvtvketetvadaieilrekGfdqlPvvkeagkvlgsvtlrellsallakkakledavkkklskklkkidegekl 422
                     +++ tv +++t ad+ ++l    + ++ v + +g ++g +t++++++al ++ akl+  v ++  +++k+i+++ + 
  MMETSP1137-20121227|778_1 108 LTDRKRSPTTVADSATLADVAKVLVTTRVPRVLVRSGSGSIVGVITQTDVVNALHSNMAKLSADVANRQLSQFKHIQDKATR 189
                3334567899********************************************************9999999999876543 PP

  == domain 3    score: 11.4 bits;  conditional E-value: 2e-05
  TIGR01137 345 lka.lvtvketetvadaieilrekGfdqlPvvkeagkvlgsvtlrellsal 394
                lk+  + ++ t t +da++ ++++ + q+ v++e+++v+  v+l++ll + 
  MMETSP1137-20121227|778_1 268 LKPlSIALQLTSTLKDAVDTMHQYHIHQVWVMNEKNQVAHVVSLTDLLAEA 318
                44414788999************************************9865 PP

>> TIGR00393  kpsF: sugar isomerase, KpsF/GutQ family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0      0.89   9.2e+02     176     207 ..      36      70 ..      27      87 .. 0.59
   2 !   20.2   0.5   7.5e-08   7.7e-05     167     261 ..     116     222 ..     102     226 .. 0.79
   3 !   12.2   0.0   2.2e-05     0.022     197     267 ..     233     309 ..     229     310 .. 0.72

  Alignments for each domain:
  == domain 1    score: -3.0 bits;  conditional E-value: 0.89
  TIGR00393 176 kdallelsekrlGlavvv...deneqlkGvltdGd 207
                kdal ++  ++l    v     e+++l+G++   d
  MMETSP1137-20121227|778_1  36 KDALEKMRTTNLSCLPVFgsaSEADNLVGLIDLSD 70 
                66666666666665555411123444555554444 PP

  == domain 2    score: 20.2 bits;  conditional E-value: 7.5e-08
  TIGR00393 167 PlvaktaslkdallelsekrlGlavvvdeneqlkGvltdGdlrr......allgggalk......kevkdvmtlggktlksdallveakellkkrkitslvvvdden 261
                 +va +a+l d+  +l  +r+  ++v   +  ++Gv+t  d+        a+l +++ +      k+++d +t   +++ +d+l+++a  l+  ++i +l+v+d ++
  MMETSP1137-20121227|778_1 116 TTVADSATLADVAKVLVTTRVPRVLVRSGSGSIVGVITQTDVVNalhsnmAKLSADVANrqlsqfKHIQDKATRAVIAVDRDHLAIDAFRLMADEQISALPVIDFDG 222
                47999************************************9874433332334444331122225688899999999*************************9664 PP

  == domain 3    score: 12.2 bits;  conditional E-value: 2.2e-05
  TIGR00393 197 eqlkGvltdGdlrr....allgggalkkevkdvmtlggktlk..sdallveakellkkrkitslvvvddenkllGvl 267
                ++++Gvl d d           + +lk++  + + l++ ++     + l +a + +++ +i+ + v++++n++  v+
  MMETSP1137-20121227|778_1 233 RDVRGVLDDADFPLglynQSALAFSLKMHGGHEAKLKPLSIAlqLTSTLKDAVDTMHQYHIHQVWVMNEKNQVAHVV 309
                5688999999987632112223344555555777788766542278999***********************98876 PP

>> TIGR01302  IMP_dehydrog: inosine-5'-monophosphate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.6   0.1   9.7e-06    0.0099     144     206 ..     103     167 ..      25     178 .. 0.84
   2 !   10.8   0.2   3.4e-05     0.035      63     198 ..     161     316 ..     160     320 .. 0.65

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 9.7e-06
  TIGR01302 144 kvsevmt..keevitvkeeidleeaeevleekkieklpvvdkegelvglvtvkdiekakefpkas 206
                +v ++ t  k++ +tv+ + +l ++ +vl   ++ +++v   +g +vg++t++d+++a + + a 
  MMETSP1137-20121227|778_1 103 TVAQALTdrKRSPTTVADSATLADVAKVLVTTRVPRVLVRSGSGSIVGVITQTDVVNALHSNMAK 167
                5667777655677899999************************************9998877665 PP

  == domain 2    score: 10.8 bits;  conditional E-value: 3.4e-05
  TIGR01302  63 iHknm...siekqveevkkvKraeegvisdpvtvsPettvedvlelkekkgisgvpvvedgkeegklvGivtkkdlrfvkdkskk...........vsevmt.kee......vitvkeeidleeaeevleekkieklpvvdkegelvglvtvkdiek 198
                +H nm   s +    ++ + K++++   + ++ v  ++   d+ +l++ ++is++pv++ + ++ +  G +t++d+r v d +              s  m   +e       i+ +   +l++a + +++ +i+++ v+++++++  +v+ +d+  
  MMETSP1137-20121227|778_1 161 LHSNMaklSADVANRQLSQFKHIQDKATRAVIAVDRDHLAIDAFRLMADEQISALPVIDFDGNR-TPEGTLTHRDVRGVLDDADFplglynqsalaFSLKMHgGHEaklkplSIALQLTSTLKDAVDTMHQYHIHQVWVMNEKNQVAHVVSLTDLLA 316
                5777622123444457888999999999999999999999999999999999999999865544.456666666666544432211221111112223233332330111114566666778999999*******************9*99999865 PP

>> TIGR01186  proV: glycine betaine/L-proline transport ATP binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0      0.12   1.3e+02     251     296 ..      25      73 ..       6      90 .. 0.72
   2 !    6.5   0.2   0.00079      0.81     309     360 ..     112     164 ..      93     167 .. 0.86
   3 !    7.5   0.4   0.00041      0.42     238     282 ..     177     221 ..     166     321 .] 0.48

  Alignments for each domain:
  == domain 1    score: -0.7 bits;  conditional E-value: 0.12
  TIGR01186 251 vlitktadkglrsalkllkdedveslyvv...drekklvGvvdvesikk 296
                 l++  a+ + ++al+ ++  + + l v     +   lvG +d+++i +
  MMETSP1137-20121227|778_1  25 PLVSCYAGDTCKDALEKMRTTNLSCLPVFgsaSEADNLVGLIDLSDIVN 73 
                4577778889999999999999988877622245567888888877754 PP

  == domain 2    score: 6.5 bits;  conditional E-value: 0.00079
  TIGR01186 309 kediltvdeqtllsellskvlkagik.vpvvdedqrlvGivsraslvdaldds 360
                k  ++tv + ++l+++ +++  + ++ v v      +vG+++++ +v+al+ +
  MMETSP1137-20121227|778_1 112 KRSPTTVADSATLADVAKVLVTTRVPrVLVRSGSGSIVGVITQTDVVNALHSN 164
                34689**************99999998999999****************9876 PP

  == domain 3    score: 7.5 bits;  conditional E-value: 0.00041
  TIGR01186 238 vldveriakraetvlitktadkglrsalkllkdedveslyvvdre 282
                 ++ ++i+ +a ++ i +  d+   +a++l+ de+++ l v+d +
  MMETSP1137-20121227|778_1 177 LSQFKHIQDKATRAVIAVDRDHLAIDAFRLMADEQISALPVIDFD 221
                444555555555555555555555555555555555555555421 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (321 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       180  (0.043881); expected 82.0 (0.02)
Passed bias filter:                      104  (0.0253535); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.34u 0.17s 00:00:00.51 Elapsed: 00:00:00.60
# Mc/sec: 706.14
//
Query:       MMETSP1137-20121227|779_1  [L=377]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.019   10.5  39.8      0.025   10.1  27.6    1.2  1  TIGR02168 SMC_prok_B: chromosome segregation protein SMC
        2.5    3.4  33.9          4    2.7  23.4    1.4  1  TIGR02169 SMC_prok_A: chromosome segregation protein SMC


Domain annotation for each model (and alignments):
>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1  27.6   1.2e-05     0.025     694     954 ..      70     340 ..      34     367 .. 0.56

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 1.2e-05
  TIGR02168 694 kiaelekelkelekeleeleeeleklrkeleelerklselkkelerlekeveqleerlaqlekeleeleeereelee....eleeaeeel.keaeeeieeleaeieqlkeelkalrealseleaeltelkeeaae..keerleslekeiaalekeleeleeqieeleeeiesleaeieeleeeleeleeeleellkekasl...eealaelreeleelseelrelekkvkelereleelreklaqlelrleeleveiaelqerlseeyele 954
                 +++l+++l+++e++  ++++ ++++ +el  +++kls+ ++ ++++e+ + ql er+++l +e e+l  ++e+++e    +++e  ++  ++ +e+ +e  a +++ ++  +a  e+l++le+  +++  ++a   +e ++++  +e+++le+  e+l ++++    +   l+ae+e++ ++l++ +++l ++l++ +s+   +++ a+l+ e+ +l++e r+ ++++ + e+e+ +lr++  +++ + e l+++++ ++e ++ ++  +
  MMETSP1137-20121227|779_1  70 CVDSLRAQLARAEQTAAAATKSASDAYEELVLASKKLSKSRTAIATMEELESQLLERRDKLLAESERLSLSEETEREgllgQIHERADAVtAQMNEKTQERLAALQEKQSLQSAAAERLASLETSKQTHAVTIAXsiLEVEMSDAVAEVERLERLNEQLVREAQAVGFTDGLLRAELEDAASSLDAVQAALRQVLESSNSTfaaHAEYARLKPERVQLAREARADKERLAAVEAEALKLRAQRDKMRSTREVLKQRFSPQAEPVQPSQHAS 340
                4556666666666666666666666666666666666666666666666666666666666666666544333333310003333333332222222222223333333333333444444444444333333320033333344444444444444444444444444445677777777777777777777776666551113455667777778888888888888888888888888888888888888888877777666555544 PP

>> TIGR02169  SMC_prok_A: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7  23.4     0.002         4     661     931 ..      80     351 ..      42     371 .. 0.66

  Alignments for each domain:
  == domain 1    score: 2.7 bits;  conditional E-value: 0.002
  TIGR02169 661 raersgelvsasekeklerlrerleeLereleslqselrriekrldelssklsdaekkie..eiekeleqleeeeeklkerleeleeklseleeeleekkeelkeleaeieeleeklaklkealedleaelseekieeieeelekleeevsriearleeieaelnklelekelleeeiqelqeeieeleeqkkeiekeieelkakleeleeeleeleaavreLeeelkdLkkereeleaelrelekkkeeleaeiekkrkrlkelkakleale 931
                rae++++  ++s ++  e+l    ++L +++ +++  ++++e++l e ++kl +++++++  e  ++   l + +e++ +  ++++ek +e   +l+ek++ + + ++++++le +++     ++    e +++      e+le l+e++ r  +++  ++  l ++  + ++  +++q + +++ e  +   + ++e + lk +  +l++e++  + +++  e+e  +L+++r+++++  + l+++   +++ ++  ++  ++ + +++a +
  MMETSP1137-20121227|779_1  80 RAEQTAAAATKSASDAYEELVLASKKLSKSRTAIA-TMEELESQLLERRDKLLAESERLSlsEETEREGLLGQIHERADAVTAQMNEKTQERLAALQEKQSLQSAAAERLASLETSKQTHAVTIAXSILEVEMSDAVAEVERLERLNEQLVREAQAVGFTDGLLRAELEDAASSLDAVQAALRQVLESSNSTFAAHAEYARLKPERVQLAREARADKERLAAVEAEALKLRAQRDKMRSTREVLKQRFSPQAEPVQPSQHASSQVRDTADATS 351
                44555666667777777777777777877776654.455666666666666655555544103333334556666666666667777777777777777777777777777777666666666665555555555555566677777777777777777777777777777777777777777777777777777788888888888888888888888888888888888888888888888888888877777777777776666665554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (377 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       356  (0.0867869); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.18s 00:00:00.59 Elapsed: 00:00:00.89
# Mc/sec: 559.10
//
Query:       MMETSP1137-20121227|780_1  [L=127]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (127 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        93  (0.0226719); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.16s 00:00:00.31 Elapsed: 00:00:00.48
# Mc/sec: 349.22
//
Query:       MMETSP1137-20121227|782_1  [L=404]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (404 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       135  (0.0329108); expected 82.0 (0.02)
Passed bias filter:                      109  (0.0265724); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.13s 00:00:00.46 Elapsed: 00:00:00.54
# Mc/sec: 987.47
//
Query:       MMETSP1137-20121227|783_1  [L=298]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.3e-05   23.5   0.3    3.2e-05   22.2   0.2    1.6  1  TIGR00401 msrA: peptide-methionine (S)-S-oxide reductase


Domain annotation for each model (and alignments):
>> TIGR00401  msrA: peptide-methionine (S)-S-oxide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.2   0.2   7.8e-09   3.2e-05       3      95 ..      95     202 ..      94     220 .. 0.70

  Alignments for each domain:
  == domain 1    score: 22.2 bits;  conditional E-value: 7.8e-09
  TIGR00401   3 itfalGCfWgveklfrkidg.v......e.ktkvGylngktenPt....yeevC....sgdtghaevvkveydpkvvsleeLldvffevidP.ttanrqgnDkGtqyrsg 95 
                ++f++GCfW v++ f + ++ +      +   ++Gy++g          y++       g+ ghaevv+++  p+++s  e+   + + +d    +  q+ DkG +yr  
  MMETSP1137-20121227|783_1  95 VYFGCGCFWHVQHEFVEAERrIlgrsdlQfTSHTGYAGGIAGADRgkvcYHNAGfiadYGKLGHAEVVQIVVPPSKFS--EFAREYCKLFDKnGYRPDQFGDKGPEYRNL 202
                69*************965432322211122457899996544332222366643222247899************976..666666666665146789*********975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (298 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        64  (0.0156021); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.25u 0.16s 00:00:00.41 Elapsed: 00:00:00.31
# Mc/sec: 1268.80
//
Query:       MMETSP1137-20121227|784_1  [L=517]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (517 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       103  (0.0251097); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.13s 00:00:00.47 Elapsed: 00:00:00.47
# Mc/sec: 1451.88
//
Query:       MMETSP1137-20121227|785_1  [L=225]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (225 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        42  (0.0102389); expected 82.0 (0.02)
Passed bias filter:                       37  (0.00901999); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.15s 00:00:00.34 Elapsed: 00:00:00.33
# Mc/sec: 899.93
//
Query:       MMETSP1137-20121227|787_1  [L=258]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (258 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        68  (0.0165773); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.13s 00:00:00.33 Elapsed: 00:00:00.33
# Mc/sec: 1031.91
//
Query:       MMETSP1137-20121227|788_1  [L=330]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (330 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        73  (0.0177962); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.13s 00:00:00.39 Elapsed: 00:00:00.38
# Mc/sec: 1146.22
//
Query:       MMETSP1137-20121227|789_1  [L=250]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (250 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        58  (0.0141394); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.13s 00:00:00.34 Elapsed: 00:00:00.34
# Mc/sec: 970.51
//
Query:       MMETSP1137-20121227|790_1  [L=154]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (154 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        57  (0.0138957); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.14s 00:00:00.29 Elapsed: 00:00:00.32
# Mc/sec: 635.20
//
Query:       MMETSP1137-20121227|791_1  [L=627]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (627 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       255  (0.0621648); expected 82.0 (0.02)
Passed bias filter:                      170  (0.0414432); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.50u 0.16s 00:00:00.66 Elapsed: 00:00:00.55
# Mc/sec: 1504.68
//
Query:       MMETSP1137-20121227|792_1  [L=44]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (44 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        32  (0.00780107); expected 82.0 (0.02)
Passed bias filter:                       31  (0.00755729); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.16s 00:00:00.26 Elapsed: 00:00:00.44
# Mc/sec: 131.99
//
Query:       MMETSP1137-20121227|793_1  [L=149]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (149 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        51  (0.012433); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.15s 00:00:00.32 Elapsed: 00:00:00.33
# Mc/sec: 595.95
//
Query:       MMETSP1137-20121227|795_1  [L=422]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (422 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       172  (0.0419308); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.14s 00:00:00.46 Elapsed: 00:00:00.70
# Mc/sec: 795.71
//
Query:       MMETSP1137-20121227|798_1  [L=191]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (191 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       124  (0.0302292); expected 82.0 (0.02)
Passed bias filter:                      114  (0.0277913); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.12s 00:00:00.31 Elapsed: 00:00:00.36
# Mc/sec: 700.28
//
Query:       MMETSP1137-20121227|800_1  [L=308]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (308 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       130  (0.0316919); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.17s 00:00:00.42 Elapsed: 00:00:00.38
# Mc/sec: 1069.81
//
Query:       MMETSP1137-20121227|801_1  [L=263]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.2e-07   29.8   5.1    2.2e-07   28.9   3.6    1.5  1  TIGR00001 rpmI_bact: ribosomal protein L35


Domain annotation for each model (and alignments):
>> TIGR00001  rpmI_bact: ribosomal protein L35
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.9   3.6   5.5e-11   2.2e-07       2      63 .]     198     260 ..     197     260 .. 0.89

  Alignments for each domain:
  == domain 1    score: 28.9 bits;  conditional E-value: 5.5e-11
  TIGR00001   2 KmKTkkaaaKRFkvtgsGkikrkkagkrHlltkKsskrk..RqLrkkalvsksdlkrvkllLpy 63 
                K+KT+ + +KRF++ + Gk  + + gk+Hl++  s+ r   R+ +++ +  k+ +k +++l+py
  MMETSP1137-20121227|801_1 198 KLKTHAGCKKRFRLRADGKYTYGHIGKKHLMAGTSRSRVlmRK-KGTNIAFKGLAKVLRKLMPY 260
                9******************************998888876577.88888888888888899987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (263 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        88  (0.0214529); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.23u 0.17s 00:00:00.40 Elapsed: 00:00:00.39
# Mc/sec: 890.08
//
Query:       MMETSP1137-20121227|802_1  [L=361]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (361 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        49  (0.0119454); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.12s 00:00:00.38 Elapsed: 00:00:00.44
# Mc/sec: 1082.91
//
Query:       MMETSP1137-20121227|804_1  [L=237]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      1e-16   58.5   0.0    1.3e-16   58.1   0.0    1.1  1  TIGR02733 desat_CrtD: C-3',4' desaturase CrtD
    1.5e-16   58.0   0.1    1.5e-16   58.0   0.1    1.1  1  TIGR02734 crtI_fam: phytoene desaturase
    1.7e-14   51.4   0.0    2.3e-14   51.0   0.0    1.1  1  TIGR02730 carot_isom: carotene isomerase
    6.2e-12   43.3   0.1    8.8e-12   42.9   0.1    1.2  1  TIGR03467 HpnE: squalene-associated FAD-dependent desaturase
    5.8e-09   33.4   0.4    8.5e-09   32.8   0.3    1.1  1  TIGR00292 TIGR00292: thiazole biosynthesis enzyme
    4.6e-08   28.8   0.2      6e-08   28.4   0.1    1.0  1  TIGR03315 Se_ygfK: putative selenate reductase, YgfK subunit
    1.1e-07   28.6   0.0    1.4e-07   28.3   0.0    1.1  1  TIGR00562 proto_IX_ox: protoporphyrinogen oxidase
      2e-06   23.7   0.9    2.5e-06   23.3   0.6    1.1  1  TIGR01372 soxA: sarcosine oxidase, alpha subunit family
    2.9e-06   24.1   0.7    3.8e-06   23.7   0.5    1.1  1  TIGR01350 lipoamide_DH: dihydrolipoyl dehydrogenase
    4.3e-06   23.9   0.9    6.1e-06   23.4   0.7    1.2  1  TIGR03364 HpnW_proposed: FAD dependent oxidoreductase TIGR03364
      2e-05   21.0   0.8    2.6e-05   20.6   0.5    1.1  1  TIGR03997 mycofact_OYE_2: mycofactocin system FadH/OYE family oxidoreductase 2
    2.7e-05   21.0   0.3    3.6e-05   20.5   0.2    1.1  1  TIGR01316 gltA: glutamate synthase (NADPH), homotetrameric
    2.8e-05   21.2   0.5    4.5e-05   20.5   0.3    1.3  1  TIGR03197 MnmC_Cterm: tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain
    5.3e-05   20.3   1.6    7.3e-05   19.8   1.1    1.2  1  TIGR02352 thiamin_ThiO: glycine oxidase ThiO
    5.7e-05   19.8   0.5    7.5e-05   19.4   0.3    1.1  1  TIGR01813 flavo_cyto_c: flavocytochrome c
    6.6e-05   19.4   0.1    6.9e-05   19.4   0.1    1.1  1  TIGR03996 mycofact_OYE_1: mycofactocin system FadH/OYE family oxidoreductase 1
    6.7e-05   19.7   0.3    9.2e-05   19.2   0.2    1.1  1  TIGR01292 TRX_reduct: thioredoxin-disulfide reductase
    7.6e-05   19.8   0.1    0.00015   18.9   0.0    1.5  1  TIGR01790 carotene-cycl: lycopene cyclase family protein
    8.7e-05   19.1   0.1    0.00013   18.6   0.1    1.2  1  TIGR01318 gltD_gamma_fam: glutamate synthase, small subunit
      9e-05   20.1   2.3    0.00011   19.8   0.9    1.6  2  TIGR02032 GG-red-SF: geranylgeranyl reductase family
    0.00021   17.8   0.6    0.00031   17.3   0.4    1.1  1  TIGR01424 gluta_reduc_2: glutathione-disulfide reductase
    0.00032   17.5   0.3    0.00045   17.0   0.2    1.1  1  TIGR01317 GOGAT_sm_gam: glutamate synthase, NADH/NADPH, small subunit
    0.00036   17.0   0.1    0.00046   16.7   0.1    1.1  1  TIGR03140 AhpF: alkyl hydroperoxide reductase, F subunit
    0.00038   17.1   0.2    0.00049   16.7   0.2    1.1  1  TIGR00551 nadB: L-aspartate oxidase
    0.00039   17.1   0.7    0.00052   16.7   0.5    1.1  1  TIGR01377 soxA_mon: sarcosine oxidase, monomeric form
    0.00042   17.2   0.0    0.00055   16.8   0.0    1.1  1  TIGR00031 UDP-GALP_mutase: UDP-galactopyranose mutase
    0.00058   16.7   0.5    0.00086   16.1   0.3    1.2  1  TIGR02732 zeta_caro_desat: carotene 7,8-desaturase
    0.00077   16.4   0.4      0.001   15.9   0.3    1.2  1  TIGR03378 glycerol3P_GlpB: glycerol-3-phosphate dehydrogenase, anaerobic, B subunit
      0.001   15.8   0.2     0.0016   15.2   0.1    1.3  1  TIGR01988 Ubi-OHases: ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family
     0.0012   15.6   0.2     0.0016   15.2   0.2    1.1  1  TIGR01438 TGR: thioredoxin and glutathione reductase
     0.0016   14.9   0.1     0.0021   14.5   0.1    1.1  1  TIGR03143 AhpF_homolog: putative alkyl hydroperoxide reductase F subunit
     0.0016   15.3   0.4     0.0054   13.6   0.3    1.7  2  TIGR02023 BchP-ChlP: geranylgeranyl reductase
     0.0017   15.4   0.8     0.0022   15.0   0.6    1.1  1  TIGR01421 gluta_reduc_1: glutathione-disulfide reductase
     0.0022   14.7   0.2     0.0034   14.1   0.1    1.3  1  TIGR01984 UbiH: 2-polyprenyl-6-methoxyphenol 4-hydroxylase
     0.0027   14.4   1.3     0.0038   13.9   0.9    1.1  1  TIGR00275 TIGR00275: flavoprotein, HI0933 family
     0.0038   14.2   0.1     0.0053   13.7   0.1    1.1  1  TIGR03911 pyrrolys_PylD: pyrrolysine biosynthesis protein PylD
     0.0056   13.3   0.8     0.0078   12.8   0.6    1.1  1  TIGR02485 CobZ_N-term: precorrin 3B synthase CobZ
     0.0063   12.8   0.2     0.0094   12.2   0.2    1.2  1  TIGR02374 nitri_red_nirB: nitrite reductase [NAD(P)H], large subunit
     0.0073   13.4   0.9       0.01   12.8   0.6    1.2  1  TIGR03366 HpnZ_proposed: putative phosphonate catabolism associated alcohol dehydrogenase
  ------ inclusion threshold ------
      0.011   11.9   0.8      0.014   11.6   0.6    1.1  1  TIGR00136 gidA: tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
      0.012   12.2   0.1      0.017   11.7   0.1    1.1  1  TIGR03329 Phn_aa_oxid: putative aminophosphonate oxidoreductase
      0.015   12.1   0.4      0.019   11.7   0.3    1.1  1  TIGR02053 MerA: mercuric reductase
       0.02   11.7   0.1      0.032   11.0   0.1    1.2  1  TIGR04046 MSMEG_0569_nitr: flavin-dependent oxidoreductase, MSMEG_0569 family
       0.03   11.0   0.1      0.041   10.5   0.1    1.1  1  TIGR00137 gid_trmFO: tRNA:m(5)U-54 methyltransferase
      0.035   10.6   1.0      0.047   10.2   0.7    1.1  1  TIGR01811 sdhA_Bsu: succinate dehydrogenase or fumarate reductase, flavoprotein subunit
      0.038   10.5   0.1      0.039   10.5   0.0    1.1  1  TIGR02731 phytoene_desat: phytoene desaturase


Domain annotation for each model (and alignments):
>> TIGR02733  desat_CrtD: C-3',4' desaturase CrtD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.1   0.0   1.5e-18   1.3e-16       2      60 ..      57     115 ..      56     139 .. 0.93

  Alignments for each domain:
  == domain 1    score: 58.1 bits;  conditional E-value: 1.5e-18
  TIGR02733   2 ksvvviGaGiaGltaaallakrGlevtlleaaaqvGGCastfkrrgfifdvGatqvaGl 60 
                 +v+viG+G++Gl aa lla+ G++v+++e+++ +GG a  f r+gf+fd G    +G+
  MMETSP1137-20121227|804_1  57 ADVIVIGSGVGGLSAACLLARYGMKVQVMESHEHAGGAAHSFTRGGFTFDSGPSLWSGM 115
                58**************************************************8877776 PP

>> TIGR02734  crtI_fam: phytoene desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.0   0.1   1.7e-18   1.5e-16       1      53 [.      59     111 ..      59     188 .. 0.89

  Alignments for each domain:
  == domain 1    score: 58.0 bits;  conditional E-value: 1.7e-18
  TIGR02734   1 avViGaGlgGLAlAirLaaaGievtvlekrdkpGGRagvleedGfrfDtGPtv 53 
                ++ViG+G+gGL++A +La+ G++v+v+e +++ GG a ++++ Gf+fD GP++
  MMETSP1137-20121227|804_1  59 VIVIGSGVGGLSAACLLARYGMKVQVMESHEHAGGAAHSFTRGGFTFDSGPSL 111
                69*************************************************96 PP

>> TIGR02730  carot_isom: carotene isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.0   0.0   2.5e-16   2.3e-14       2      80 ..      58     135 ..      57     140 .. 0.95

  Alignments for each domain:
  == domain 1    score: 51.0 bits;  conditional E-value: 2.5e-16
  TIGR02730   2 daivigsgigglvtatqlaakgakvlvlekylipggsagyferegykfdvgaslifgfgdkgttnlltralaavgekle 80 
                d+ivigsg+ggl +a+ la  g+kv v+e++   gg+a  f r g++fd g sl  g+++  ++n l + l av+e++e
  MMETSP1137-20121227|804_1  58 DVIVIGSGVGGLSAACLLARYGMKVQVMESHEHAGGAAHSFTRGGFTFDSGPSLWSGMAEP-SMNPLRQVLDAVEEDVE 135
                99********************************************************986.67999********9998 PP

>> TIGR03467  HpnE: squalene-associated FAD-dependent desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.9   0.1   9.8e-14   8.8e-12       1      55 [.      59     111 ..      59     136 .. 0.89

  Alignments for each domain:
  == domain 1    score: 42.9 bits;  conditional E-value: 9.8e-14
  TIGR03467   1 vvvvGgGlAGLaAAveLaraGvrvtllEarrqlGGRarsfedgslgetiDngqHv 55 
                v+v+G G+ GL+AA+ Lar G++v+++E+ +++GG a sf++g+ +  +D g  +
  MMETSP1137-20121227|804_1  59 VIVIGSGVGGLSAACLLARYGMKVQVMESHEHAGGAAHSFTRGGFT--FDSGPSL 111
                89*****************************************999..9999766 PP

>> TIGR00292  TIGR00292: thiazole biosynthesis enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.8   0.3   9.6e-11   8.5e-09       6      67 ..      42     105 ..      39     107 .. 0.78

  Alignments for each domain:
  == domain 1    score: 32.8 bits;  conditional E-value: 9.6e-11
  TIGR00292   6 raiveayfedlldyaesDviivGaGpsGLtaayylakeglkvvvlerklaiGGGsw...gGGmlf 67 
                ra++  ++ +  d  ++Dvi++G+G  GL+aa  la+ g+kv v+e++   GG       GG  f
  MMETSP1137-20121227|804_1  42 RAVTALASTEAED-SQADVIVIGSGVGGLSAACLLARYGMKVQVMESHEHAGGAAHsftRGGFTF 105
                5555555555444.589********************************9999754111466666 PP

>> TIGR03315  Se_ygfK: putative selenate reductase, YgfK subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.4   0.1   6.7e-10     6e-08     526     576 ..      45      95 ..      33      99 .. 0.87

  Alignments for each domain:
  == domain 1    score: 28.4 bits;  conditional E-value: 6.7e-10
  TIGR03315 526 eklekpqlksekhkvaviGaGPaGlsagyflaraGlpvtvfekkekagGvv 576
                + l ++++++++  v viG+G  Glsa+ +lar G++v v+e +e+agG  
  MMETSP1137-20121227|804_1  45 TALASTEAEDSQADVIVIGSGVGGLSAACLLARYGMKVQVMESHEHAGGAA 95 
                55667778888889**********************************976 PP

>> TIGR00562  proto_IX_ox: protoporphyrinogen oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.3   0.0   1.6e-09   1.4e-07       2      65 ..      56     117 ..      55     136 .. 0.87

  Alignments for each domain:
  == domain 1    score: 28.3 bits;  conditional E-value: 1.6e-09
  TIGR00562   2 kkkvvvvGgGisGLciayalekerpdvelvlvEakdRvGGkiyTrkesGyllEkGprtlleske 65 
                +++v+v+G+G+ GL++a  l++   ++ + ++E+++  GG  +   + G+ ++ Gp    +  e
  MMETSP1137-20121227|804_1  56 QADVIVIGSGVGGLSAACLLARY--GMKVQVMESHEHAGGAAHSFTRGGFTFDSGPSLWSGMAE 117
                689******************99..9******************************87666555 PP

>> TIGR01372  soxA: sarcosine oxidase, alpha subunit family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.3   0.6   2.9e-08   2.5e-06     165     209 ..      53      97 ..      39     107 .. 0.88

  Alignments for each domain:
  == domain 1    score: 23.3 bits;  conditional E-value: 2.9e-08
  TIGR01372 165 vnahcDvLvvGaGpaGLaaAraAaraGarvilvdeqaeaGGslls 209
                    +Dv+v+G+G  GL+aA   ar G++v +++ +++aGG+ +s
  MMETSP1137-20121227|804_1  53 EDSQADVIVIGSGVGGLSAACLLARYGMKVQVMESHEHAGGAAHS 97 
                55679************************************9876 PP

>> TIGR01350  lipoamide_DH: dihydrolipoyl dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.7   0.5   4.2e-08   3.8e-06       2      38 ..      57      94 ..      56      97 .. 0.94

  Alignments for each domain:
  == domain 1    score: 23.7 bits;  conditional E-value: 4.2e-08
  TIGR01350  2 ydvvviGgGpgGYvaAiraaqlglkvalvek.eklGGt 38
                dv+viG+G gG  aA   a+ g+kv ++e  e+ GG 
  MMETSP1137-20121227|804_1 57 ADVIVIGSGVGGLSAACLLARYGMKVQVMEShEHAGGA 94
               69****************************98999995 PP

>> TIGR03364  HpnW_proposed: FAD dependent oxidoreductase TIGR03364
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.4   0.7   6.8e-08   6.1e-06       2      39 ..      58      95 ..      57     100 .. 0.96

  Alignments for each domain:
  == domain 1    score: 23.4 bits;  conditional E-value: 6.8e-08
  TIGR03364  2 dvvvvGaGivGlahAlaaarrGlkVtvierssraaGAs 39
               dv+v+G+G+ Gl+ A   ar G+kV v+e +++a GA+
  MMETSP1137-20121227|804_1 58 DVIVIGSGVGGLSAACLLARYGMKVQVMESHEHAGGAA 95
               9***********************************95 PP

>> TIGR03997  mycofact_OYE_2: mycofactocin system FadH/OYE family oxidoreductase 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   0.5   2.9e-07   2.6e-05     363     419 ..      40      96 ..      33     104 .. 0.80

  Alignments for each domain:
  == domain 1    score: 20.6 bits;  conditional E-value: 2.9e-07
  TIGR03997 363 aGrelkeavtlkkarrrkkvlvvGgGPaGleaaataarrGhrvtllereeelGGqvk 419
                  r ++  ++ +    +  v+v+G+G +Gl+aa   ar G +v ++e +e+ GG+ +
  MMETSP1137-20121227|804_1  40 RARAVTALASTEAEDSQADVIVIGSGVGGLSAACLLARYGMKVQVMESHEHAGGAAH 96 
                5555445555555566689***********************************865 PP

>> TIGR01316  gltA: glutamate synthase (NADPH), homotetrameric
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   0.2   4.1e-07   3.6e-05     127     171 ..      50      94 ..      39      99 .. 0.87

  Alignments for each domain:
  == domain 1    score: 20.5 bits;  conditional E-value: 4.1e-07
  TIGR01316 127 ekapstkkkvaviGaGpaGlavaselakkGhevtvfealhkpGGv 171
                  a+ ++  v viG+G  Gl+ a  la+ G +v+v e+ +  GG 
  MMETSP1137-20121227|804_1  50 TEAEDSQADVIVIGSGVGGLSAACLLARYGMKVQVMESHEHAGGA 94 
                446678899*****************************9999996 PP

>> TIGR03197  MnmC_Cterm: tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   0.3   5.1e-07   4.5e-05       1      38 [.      58      95 ..      58     105 .. 0.88

  Alignments for each domain:
  == domain 1    score: 20.5 bits;  conditional E-value: 5.1e-07
  TIGR03197  1 kvavIGaGiAgaalalsLarrGvqvtllekdeklaqgA 38
               +v+vIG G+ g+++a  Lar G++v+++e++e+ +  A
  MMETSP1137-20121227|804_1 58 DVIVIGSGVGGLSAACLLARYGMKVQVMESHEHAGGAA 95
               69*****************************7776555 PP

>> TIGR02352  thiamin_ThiO: glycine oxidase ThiO
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   1.1   8.2e-07   7.3e-05       1      38 [.      59      96 ..      59     102 .. 0.93

  Alignments for each domain:
  == domain 1    score: 19.8 bits;  conditional E-value: 8.2e-07
  TIGR02352  1 vlviGgGviGlsvAveLakrghkvtllekdevgsgAsk 38
               v+viG Gv Gls A  La+ g+kv+++e++e ++gA++
  MMETSP1137-20121227|804_1 59 VIVIGSGVGGLSAACLLARYGMKVQVMESHEHAGGAAH 96
               79****************************98999887 PP

>> TIGR01813  flavo_cyto_c: flavocytochrome c
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.3   8.4e-07   7.5e-05       1      39 [.      58      95 ..      58     104 .. 0.93

  Alignments for each domain:
  == domain 1    score: 19.4 bits;  conditional E-value: 8.4e-07
  TIGR01813  1 dvvvvGsGlAGlsaaleakkaglaevvvleKapviGGNs 39
               dv+v+GsG+ Glsaa  + + g ++v v+e  + +GG +
  MMETSP1137-20121227|804_1 58 DVIVIGSGVGGLSAACLLARYG-MKVQVMESHEHAGGAA 95
               8*********************.9*************75 PP

>> TIGR03996  mycofact_OYE_1: mycofactocin system FadH/OYE family oxidoreductase 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.1   7.7e-07   6.9e-05     368     418 ..      52     102 ..      38     179 .. 0.89

  Alignments for each domain:
  == domain 1    score: 19.4 bits;  conditional E-value: 7.7e-07
  TIGR03996 368 raatpgdvlvvGGGpaGleaarvlavrGhrvtlaeasarlGGmvriaargd 418
                +    +dv+v+G G  Gl aa +la  G +v+++e+  + GG    ++rg 
  MMETSP1137-20121227|804_1  52 AEDSQADVIVIGSGVGGLSAACLLARYGMKVQVMESHEHAGGAAHSFTRGG 102
                4456789****************************************9984 PP

>> TIGR01292  TRX_reduct: thioredoxin-disulfide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   0.2     1e-06   9.2e-05       2      38 ..      58      94 ..      57     103 .. 0.89

  Alignments for each domain:
  == domain 1    score: 19.2 bits;  conditional E-value: 1e-06
  TIGR01292  2 dviiiGaGpaGltaaiYaaranlktlliegkeaggql 38
               dvi+iG+G +Gl+aa   ar+++k+ ++e++e++g  
  MMETSP1137-20121227|804_1 58 DVIVIGSGVGGLSAACLLARYGMKVQVMESHEHAGGA 94
               9***********************9999998887754 PP

>> TIGR01790  carotene-cycl: lycopene cyclase family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.0   1.7e-06   0.00015       1      37 [.      58      94 ..      58     105 .. 0.89

  Alignments for each domain:
  == domain 1    score: 18.9 bits;  conditional E-value: 1.7e-06
  TIGR01790  1 DliviGgGlAglaiAlelakpglrvqlieaapklpfn 37
               D+iviG+G  gl  A  la+ g++vq++e+++++++ 
  MMETSP1137-20121227|804_1 58 DVIVIGSGVGGLSAACLLARYGMKVQVMESHEHAGGA 94
               9****************************88887764 PP

>> TIGR01318  gltD_gamma_fam: glutamate synthase, small subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.1   1.4e-06   0.00013     139     179 ..      54      94 ..      44     107 .. 0.87

  Alignments for each domain:
  == domain 1    score: 18.6 bits;  conditional E-value: 1.4e-06
  TIGR01318 139 ktgkrvaviGaGpaGlacadvlaraGvkvvvfdrypeiGGl 179
                +++  v viG+G  Gl+ a +lar G+kv+v + +++ GG 
  MMETSP1137-20121227|804_1  54 DSQADVIVIGSGVGGLSAACLLARYGMKVQVMESHEHAGGA 94 
                5567899********************************96 PP

>> TIGR02032  GG-red-SF: geranylgeranyl reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   0.9   1.2e-06   0.00011       2      34 ..      58      90 ..      57      95 .. 0.93
   2 ?   -2.7   0.0       8.8   7.8e+02     139     153 ..     185     199 ..     178     205 .. 0.83

  Alignments for each domain:
  == domain 1    score: 19.8 bits;  conditional E-value: 1.2e-06
  TIGR02032  2 DvvvvGaGpaGssaAlrlakkGlrVlllekkel 34
               Dv+v+G G  G saA  la+ G++V ++e +e 
  MMETSP1137-20121227|804_1 58 DVIVIGSGVGGLSAACLLARYGMKVQVMESHEH 90
               *****************************9976 PP

  == domain 2    score: -2.7 bits;  conditional E-value: 8.8
  TIGR02032 139 kivigAdGakskvak 153
                  vi A Ga s++a 
  MMETSP1137-20121227|804_1 185 SPVISASGATSPMAL 199
                5699*******9986 PP

>> TIGR01424  gluta_reduc_2: glutathione-disulfide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.4   3.4e-06   0.00031       4      38 ..      58      92 ..      56     101 .. 0.87

  Alignments for each domain:
  == domain 1    score: 17.3 bits;  conditional E-value: 3.4e-06
  TIGR01424  4 dlfviGaGsGGvraarlaaalGakvaiaeedlvGG 38
               d+ viG+G GG+ aa l a +G kv + e +   G
  MMETSP1137-20121227|804_1 58 DVIVIGSGVGGLSAACLLARYGMKVQVMESHEHAG 92
               899**************************876443 PP

>> TIGR01317  GOGAT_sm_gam: glutamate synthase, NADH/NADPH, small subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.2   5.1e-06   0.00045     144     180 ..      57      93 ..      48      98 .. 0.91

  Alignments for each domain:
  == domain 1    score: 17.0 bits;  conditional E-value: 5.1e-06
  TIGR01317 144 kkvavvGsGPaGlaaadqlnraGhtvtvferedrvGG 180
                  v v+GsG  Gl+aa  l+r G +v v e ++ +GG
  MMETSP1137-20121227|804_1  57 ADVIVIGSGVGGLSAACLLARYGMKVQVMESHEHAGG 93 
                5799********************************9 PP

>> TIGR03140  AhpF: alkyl hydroperoxide reductase, F subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.1   5.2e-06   0.00046     203     243 ..      47      87 ..      28      99 .. 0.81

  Alignments for each domain:
  == domain 1    score: 16.7 bits;  conditional E-value: 5.2e-06
  TIGR03140 203 aeeaeeekekydvlvvGgGPagaaaaiyaarkGlkvalvae 243
                 +++e e ++ dv+v+G+G  g +aa   ar G+kv ++ +
  MMETSP1137-20121227|804_1  47 LASTEAEDSQADVIVIGSGVGGLSAACLLARYGMKVQVMES 87 
                45566778899*************************99853 PP

>> TIGR00551  nadB: L-aspartate oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.2   5.5e-06   0.00049       2      46 ..      56     102 ..      55     108 .. 0.82

  Alignments for each domain:
  == domain 1    score: 16.7 bits;  conditional E-value: 5.5e-06
  TIGR00551   2 eadvvviGsGaagLsaalalaekyr.vvvlskaevkesasv.yaqgG 46 
                +adv+viGsG+ gLsaa  la+ +  v v+  +e   +a++ +  gG
  MMETSP1137-20121227|804_1  56 QADVIVIGSGVGGLSAACLLARYGMkVQVMESHEHAGGAAHsFTRGG 102
                79*******************99988*99998877666554267776 PP

>> TIGR01377  soxA_mon: sarcosine oxidase, monomeric form
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.5   5.8e-06   0.00052       2      46 ..      58     100 ..      57     101 .. 0.91

  Alignments for each domain:
  == domain 1    score: 16.7 bits;  conditional E-value: 5.8e-06
  TIGR01377   2 DvivvGaGvmGsaaayqLakrgkkvLLleqfdlphsrGsshGesr 46 
                Dviv+G+Gv G +aa  La+ g kv ++e+    h  G+ h  +r
  MMETSP1137-20121227|804_1  58 DVIVIGSGVGGLSAACLLARYGMKVQVMESH--EHAGGAAHSFTR 100
                9****************************97..588899887666 PP

>> TIGR00031  UDP-GALP_mutase: UDP-galactopyranose mutase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0   6.2e-06   0.00055       3      41 ..      58      96 ..      56     111 .. 0.93

  Alignments for each domain:
  == domain 1    score: 16.8 bits;  conditional E-value: 6.2e-06
  TIGR00031  3 dyiivGaGlsGivlaeilaklnkrvlvvekrnhiGGncy 41
               d+i++G+G+ G   a  la+++ +v v+e  +h GG ++
  MMETSP1137-20121227|804_1 58 DVIVIGSGVGGLSAACLLARYGMKVQVMESHEHAGGAAH 96
               89**********************************986 PP

>> TIGR02732  zeta_caro_desat: carotene 7,8-desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.3   9.6e-06   0.00086       2      42 ..      59      99 ..      58     108 .. 0.93

  Alignments for each domain:
  == domain 1    score: 16.1 bits;  conditional E-value: 9.6e-06
  TIGR02732  2 vaivgaglaglatavelvdaghevelyesrsflggkvgswv 42
               v ++g+g+ gl++a  l+  g++v++ es    gg   s++
  MMETSP1137-20121227|804_1 59 VIVIGSGVGGLSAACLLARYGMKVQVMESHEHAGGAAHSFT 99
               789********************************999986 PP

>> TIGR03378  glycerol3P_GlpB: glycerol-3-phosphate dehydrogenase, anaerobic, B subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.3   1.2e-05     0.001       2      41 ..      58     101 ..      57     114 .. 0.82

  Alignments for each domain:
  == domain 1    score: 15.9 bits;  conditional E-value: 1.2e-05
  TIGR03378   2 DviiiGgGlaGlscalrlaeaGkktaiiaa....GqsalhFssG 41 
                Dvi+iG+G+ Gls+a  la+ G+k+ ++ +    G +a  F+ G
  MMETSP1137-20121227|804_1  58 DVIVIGSGVGGLSAACLLARYGMKVQVMEShehaGGAAHSFTRG 101
                9**************************97522225566666555 PP

>> TIGR01988  Ubi-OHases: ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.1   1.7e-05    0.0016       1      34 [.      58      90 ..      58     108 .. 0.86

  Alignments for each domain:
  == domain 1    score: 15.2 bits;  conditional E-value: 1.7e-05
  TIGR01988  1 divIvGgGlvGlalAlaLassadlkvalveakaa 34
               d++++G+G+ Gl+ A+ La+ + +kv ++e+++ 
  MMETSP1137-20121227|804_1 58 DVIVIGSGVGGLSAACLLARYG-MKVQVMESHEH 90
               9******************887.******99865 PP

>> TIGR01438  TGR: thioredoxin and glutathione reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.2   1.7e-05    0.0016       3      36 ..      57      90 ..      55     108 .. 0.81

  Alignments for each domain:
  == domain 1    score: 15.2 bits;  conditional E-value: 1.7e-05
  TIGR01438  3 ydliviGgGsGGlaaakeaaklgakvllldfvkp 36
                d+iviG+G GGl+aa   a +g kv +++  + 
  MMETSP1137-20121227|804_1 57 ADVIVIGSGVGGLSAACLLARYGMKVQVMESHEH 90
               599*************************987654 PP

>> TIGR03143  AhpF_homolog: putative alkyl hydroperoxide reductase F subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.1   2.4e-05    0.0021       6      40 ..      58      92 ..      54     100 .. 0.86

  Alignments for each domain:
  == domain 1    score: 14.5 bits;  conditional E-value: 2.4e-05
  TIGR03143  6 dlvviGgGpaglsaGiyagraklkvliiekdelGG 40
               d++viG+G  glsa   ++r  +kv ++e +e  G
  MMETSP1137-20121227|804_1 58 DVIVIGSGVGGLSAACLLARYGMKVQVMESHEHAG 92
               9***************************9766544 PP

>> TIGR02023  BchP-ChlP: geranylgeranyl reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   0.3   6.1e-05    0.0054       2      32 ..      58      88 ..      57      97 .. 0.90
   2 ?   -1.1   0.0       1.7   1.5e+02     144     164 ..     184     204 ..     175     223 .. 0.78

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 6.1e-05
  TIGR02023  2 dvlviGggpsGaaaaetLakagievillere 32
               dv+viG+g++G +aa  La+ g++v ++e +
  MMETSP1137-20121227|804_1 58 DVIVIGSGVGGLSAACLLARYGMKVQVMESH 88
               8************************999875 PP

  == domain 2    score: -1.1 bits;  conditional E-value: 1.7
  TIGR02023 144 advviGaDGakskvakelglg 164
                a+ vi a Ga s++a   +lg
  MMETSP1137-20121227|804_1 184 ASPVISASGATSPMALRSDLG 204
                6779********999665555 PP

>> TIGR01421  gluta_reduc_1: glutathione-disulfide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.6   2.5e-05    0.0022       3      38 ..      57      92 ..      55      97 .. 0.90

  Alignments for each domain:
  == domain 1    score: 15.0 bits;  conditional E-value: 2.5e-05
  TIGR01421  3 ydylviGGGsGGiasarraaeyGakallveekklGG 38
                d++viG G GG+++a   a+yG k+ ++e+++  G
  MMETSP1137-20121227|804_1 57 ADVIVIGSGVGGLSAACLLARYGMKVQVMESHEHAG 92
               69*****************************98655 PP

>> TIGR01984  UbiH: 2-polyprenyl-6-methoxyphenol 4-hydroxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.1   3.8e-05    0.0034       1      34 [.      58      90 ..      58     102 .. 0.91

  Alignments for each domain:
  == domain 1    score: 14.1 bits;  conditional E-value: 3.8e-05
  TIGR01984  1 dviivGgglvGlslAlaLsrksklkialieaksa 34
               dvi++G+g+ Gls A  L+r + +k++++e+++ 
  MMETSP1137-20121227|804_1 58 DVIVIGSGVGGLSAACLLARYG-MKVQVMESHEH 90
               8*********************.*******9875 PP

>> TIGR00275  TIGR00275: flavoprotein, HI0933 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.9   4.2e-05    0.0038       1      34 [.      59      92 ..      59      94 .. 0.95

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 4.2e-05
  TIGR00275  1 viiiGgGaaGlmaAitaaeegakVlllEknkkig 34
               vi+iG G  Gl aA  +a+ g kV ++E+++++g
  MMETSP1137-20121227|804_1 59 VIVIGSGVGGLSAACLLARYGMKVQVMESHEHAG 92
               79**************************998876 PP

>> TIGR03911  pyrrolys_PylD: pyrrolysine biosynthesis protein PylD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   0.1     6e-05    0.0053     135     177 ..      46      88 ..      33      95 .. 0.83

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 6e-05
  TIGR03911 135 aldllkaglkekdvlviGlGkvGtaaavalvkkGakvyvydke 177
                al   +a+  + dv+viG G  G +aa  l  +G+kv v++ +
  MMETSP1137-20121227|804_1  46 ALASTEAEDSQADVIVIGSGVGGLSAACLLARYGMKVQVMESH 88 
                666667777899*************************998765 PP

>> TIGR02485  CobZ_N-term: precorrin 3B synthase CobZ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.8   0.6   8.8e-05    0.0078       3      41 ..      58      94 ..      56     101 .. 0.83

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 8.8e-05
  TIGR02485  3 dvlviGgGlaglCaaiearraGasvllleaaPrdlrGGn 41
               dv+viG+G+ gl aa   +r G  v+++e+      GG 
  MMETSP1137-20121227|804_1 58 DVIVIGSGVGGLSAACLLARYGMKVQVMESHE--HAGGA 94
               9****************************954..44554 PP

>> TIGR02374  nitri_red_nirB: nitrite reductase [NAD(P)H], large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.2   0.2   0.00011    0.0094     140     171 ..      56      87 ..      40      91 .. 0.78

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 0.00011
  TIGR02374 140 tkkaaviGgGLLGLeaaraLknlGldvsviel 171
                  + +viG+G+ GL aa  L ++G++v+v+e 
  MMETSP1137-20121227|804_1  56 QADVIVIGSGVGGLSAACLLARYGMKVQVMES 87 
                23459************************985 PP

>> TIGR03366  HpnZ_proposed: putative phosphonate catabolism associated alcohol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.8   0.6   0.00012      0.01     133     199 ..      35      98 ..      16     104 .. 0.75

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 0.00012
  TIGR03366 133 vaapaaCatatvaaaleaagdlegrrvlvlGaGmLGLtaaaaaeerGasrviavDpsaeRrelaaaf 199
                  apa   + t  a  ea  + + + v+v+G G+ GL+aa  ++  G+ +v +++ +++   +a++f
  MMETSP1137-20121227|804_1  35 HQAPARARAVTALASTEA--EDSQADVIVIGSGVGGLSAACLLARYGM-KVQVMESHEHAGGAAHSF 98 
                455665554444444443..345799*********************9.899999888777766666 PP

>> TIGR00136  gidA: tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.6   0.00016     0.014       2      30 ..      58      86 ..      57      97 .. 0.90

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 0.00016
  TIGR00136  2 dviviGaGhaGieaalaaarlgaktlllt 30
               dviviG+G  G+ aa   ar g+k++++ 
  MMETSP1137-20121227|804_1 58 DVIVIGSGVGGLSAACLLARYGMKVQVME 86
               8************************9975 PP

>> TIGR03329  Phn_aa_oxid: putative aminophosphonate oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.1   0.00019     0.017      13      70 ..      45     102 ..      36     112 .. 0.78

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 0.00019
  TIGR03329  13 sdlakalkgdteadvaivGGGftGlwtaillkqaepkldvlvleadlcGaGasGrnGG 70 
                ++la +  +d +adv ++G G  Gl +a ll +   k++v+   +   Ga  s   GG
  MMETSP1137-20121227|804_1  45 TALASTEAEDSQADVIVIGSGVGGLSAACLLARYGMKVQVMESHEHAGGAAHSFTRGG 102
                567777889*********************9888766666655556666666666676 PP

>> TIGR02053  MerA: mercuric reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.3   0.00022     0.019     168     197 ..      57      86 ..      39      95 .. 0.60

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 0.00022
  TIGR02053 168 eslvviGggaiavElaqlfarlGsevtllq 197
                  ++viG+g+ ++ +a l+ar G++v++++
  MMETSP1137-20121227|804_1  57 ADVIVIGSGVGGLSAACLLARYGMKVQVME 86 
                455555555555555555555555555554 PP

>> TIGR04046  MSMEG_0569_nitr: flavin-dependent oxidoreductase, MSMEG_0569 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.1   0.00035     0.032       2      34 ..      58      90 ..      57     101 .. 0.89

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 0.00035
  TIGR04046  2 pvviiGaGqaGlsvsyllkkkgvdhvvlekktv 34
               +v++iG+G  Gls + ll + g++  v+e+++ 
  MMETSP1137-20121227|804_1 58 DVIVIGSGVGGLSAACLLARYGMKVQVMESHEH 90
               79***************************9975 PP

>> TIGR00137  gid_trmFO: tRNA:m(5)U-54 methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.1   0.00046     0.041       2      40 ..      58      96 ..      57     100 .. 0.88

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 0.00046
  TIGR00137  2 kvnviGgGlaGseaawqlakeGvrvilyemrpkkltpah 40
                v+viG+G+ G  aa  la+ G++v+++e   +    ah
  MMETSP1137-20121227|804_1 58 DVIVIGSGVGGLSAACLLARYGMKVQVMESHEHAGGAAH 96
               599************************998877666666 PP

>> TIGR01811  sdhA_Bsu: succinate dehydrogenase or fumarate reductase, flavoprotein subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.7   0.00052     0.047       1      40 [.      59      99 ..      59     105 .. 0.82

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 0.00052
  TIGR01811  1 vivvGtGlaGlsaaiklaelGydvklfsyqd.avrrahsia 40
               viv+G+G+ Glsaa  la  G++v+ +  ++ a   ahs +
  MMETSP1137-20121227|804_1 59 VIVIGSGVGGLSAACLLARYGMKVQVMESHEhAGGAAHSFT 99
               8***********************99866551556778865 PP

>> TIGR02731  phytoene_desat: phytoene desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   0.00044     0.039       2      78 ..      59     136 ..      58     190 .. 0.79

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 0.00044
  TIGR02731   2 vaiagaglaglsaakyladaghtpivleardvlggkvaawkdedgdwyetglhiffg.aypnllqllkeln.iedrlqw 78 
                v++ g+g+ glsaa  la  g +  v+e+++  gg   ++    g  +++g  ++ g a p +  l + l+ +e+ ++w
  MMETSP1137-20121227|804_1  59 VIVIGSGVGGLSAACLLARYGMKVQVMESHEHAGGAAHSFT-RGGFTFDSGPSLWSGmAEPSMNPLRQVLDaVEEDVEW 136
                8999******************************9776664.4566677777777765567777666666425566666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (237 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       208  (0.050707); expected 82.0 (0.02)
Passed bias filter:                      195  (0.0475378); expected 82.0 (0.02)
Passed Vit filter:                        77  (0.0187713); expected 4.1 (0.001)
Passed Fwd filter:                        46  (0.011214); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              46  [number of targets reported over threshold]
# CPU time: 0.41u 0.16s 00:00:00.56 Elapsed: 00:00:00.60
# Mc/sec: 521.36
//
Query:       MMETSP1137-20121227|805_1  [L=198]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (198 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       144  (0.0351048); expected 82.0 (0.02)
Passed bias filter:                      104  (0.0253535); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.16s 00:00:00.35 Elapsed: 00:00:00.26
# Mc/sec: 1005.15
//
Query:       MMETSP1137-20121227|806_1  [L=255]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (255 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        45  (0.0109703); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.14s 00:00:00.37 Elapsed: 00:00:00.24
# Mc/sec: 1402.38
//
Query:       MMETSP1137-20121227|807_1  [L=435]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (435 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        55  (0.0134081); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.14s 00:00:00.44 Elapsed: 00:00:00.32
# Mc/sec: 1794.23
//
Query:       MMETSP1137-20121227|808_1  [L=106]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (106 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        55  (0.0134081); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.14s 00:00:00.30 Elapsed: 00:00:00.39
# Mc/sec: 358.74
//
Query:       MMETSP1137-20121227|809_1  [L=411]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.8e-05   21.7   0.0    0.00041   17.3   0.0    2.1  2  TIGR01293 Kv_beta: voltage-dependent potassium channel beta subunit


Domain annotation for each model (and alignments):
>> TIGR01293  Kv_beta: voltage-dependent potassium channel beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.0     1e-07   0.00041      30     185 ..     150     304 ..     122     332 .. 0.72
   2 !    2.3   0.0    0.0037        15     255     313 ..     338     392 ..     326     398 .. 0.74

  Alignments for each domain:
  == domain 1    score: 17.3 bits;  conditional E-value: 1e-07
  TIGR01293  30 deqaedllklayesginlfdiaevyaagkaetelgkil...kkkg.wrrssyvittkifwggkaeeerglsrkhiieglkaslerlqleyvdivlanra...dp.sspm......eevvramtyvinqglalywgtsrwsaveimeaysvarqfnlippiveqaeyhlfq 185
                d+   ++l  a+  g  l+d++  y    +e  +g+ l   + +g  +r  + + tki++      + g+     + +++ slerlq e +d+vl++ +   d  +sp       e++ ra     ++gl    g s w+   + e+   +r    +pp v q+e h  +
  MMETSP1137-20121227|809_1 150 DDARLQILD-ALRAGYRLLDTSAHYP---SEEIMGDALnlaETEGiVQRRDVTVCTKIWFD-----DMGF--DPALASIRRSLERLQTEQLDLVLIHFPgspDAiQSPKrnrelrEQTWRACERAQDDGLVKRIGLSNWTRRHLRETMLSCR----TPPSVLQTEVHPRC 304
                344444443.88999*******9999...56666655511156673478889999***998.....4454..456889******************9642113223453222233678999999**********************999999....58888888888655 PP

  == domain 2    score: 2.3 bits;  conditional E-value: 0.0037
  TIGR01293 255 dlaalaeklgctlaqlaiawslrsegvssvllgassaeqlmeslgslqvllklsssvvl 313
                 l+ +a + g t++q+ + ws+++  v   +  +ss  ++ e+l +l+ +  ls s + 
  MMETSP1137-20121227|809_1 338 SLLRVASEAGRTPSQIVLRWSMQKGLVP--IPHSSSFARMRENLAALDFK--LSGSQMA 392
                68899*****************987664..34567777888999888765..4444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (411 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       133  (0.0324232); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.14s 00:00:00.48 Elapsed: 00:00:00.48
# Mc/sec: 1130.16
//
Query:       MMETSP1137-20121227|811_1  [L=392]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      3e-17   60.7   0.4    6.1e-17   59.7   0.3    1.4  1  TIGR00569 ccl1: cyclin ccl1


Domain annotation for each model (and alignments):
>> TIGR00569  ccl1: cyclin ccl1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.7   0.3   1.5e-20   6.1e-17      64     221 ..      75     236 ..      66     246 .. 0.82

  Alignments for each domain:
  == domain 1    score: 59.7 bits;  conditional E-value: 1.5e-20
  TIGR00569  64 ldlasalkptlPkevvgtAilyFkRFyLnnsvmeydPkiivltcvFlAcKveef.....nvsieqFvknlket........rekaleevLeyEllliqsLkfsLlvhnPyrPleGFllDiktvlpkleneevlrkiadkflnevlltDvvllytPsqiaLaailseasrlv 221
                ++  ++l+  lP+  ++tAi++++RF+ + s  +y    i +tc+FlA+Kvee       v ie +  +  ++         +   e++L  E  l+q L f+L+v + yrPl  ++  i+           l + a +f+n+ l t ++l y+P  ++ aa++ +a  l 
  MMETSP1137-20121227|811_1  75 QESGQKLR--LPQLSIATAIVFYHRFFAHKSYENYCRFTIATTCLFLASKVEETpkklkDVVIETYRIQHGRQapdpesqeFKDLKERILVSERVLLQTLGFDLTVEHAYRPLLAYVKSIQGTR-------DLAQVAWNFINDSLRTTICLQYAPRHVSAAAVYLAARYLS 236
                56677888..******************************************97332224666655433333246667743234569**************************98877776554.......6889999**************************9987665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (392 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       100  (0.0243784); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.31u 0.14s 00:00:00.45 Elapsed: 00:00:00.54
# Mc/sec: 958.14
//
Query:       MMETSP1137-20121227|813_1  [L=92]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (92 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        82  (0.0199902); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.14s 00:00:00.26 Elapsed: 00:00:00.26
# Mc/sec: 467.04
//
Query:       MMETSP1137-20121227|814_1  [L=752]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.5e-57  192.6  31.1    4.5e-57  191.8  21.6    1.4  1  TIGR00813 sss: transporter, solute:sodium symporter (SSS) family
    4.2e-12   43.3  16.2      2e-08   31.2   3.5    2.3  2  TIGR02121 Na_Pro_sym: sodium/proline symporter
    6.3e-12   43.1  31.0      5e-07   26.9   7.2    2.2  2  TIGR02119 panF: sodium/pantothenate symporter


Domain annotation for each model (and alignments):
>> TIGR00813  sss: transporter, solute:sodium symporter (SSS) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  191.8  21.6   3.3e-60   4.5e-57       1     411 []     132     561 ..     132     561 .. 0.92

  Alignments for each domain:
  == domain 1    score: 191.8 bits;  conditional E-value: 3.3e-60
  TIGR00813   1 yflagrslgglvvaaslvasnisasqllGlpgeayasGlai.iflelaalvllivlgllfvpvyikag.vltmpeylekRFgkrilrilsvlililviflkisvdlfsgalllelvlGldlylsllllalitilYtviGGlkAvvwtDtlqavimivgvlilpvvafsevgg..lesvvekakqaaptvvs....................vddllkleldpltsdlpwgalvfGliivallywcldqvivqRllaaksaksakkgvlisgvlkllpmllavlpGliaralytdvdpalagavqqasdqaypllvvellppglaglflavllaAvlStlssilnsastvfteDlYkkiirkaaekekkivsrgrvavlvaiviaiv.vaaaq......sgqvlqlvqsafgilgapllavfvLglfwkrvnakGAlvgliiG 411
                + +agr++++ ++a  +v+ + +a++ll ++  a+++Gl++ ++++++a ++++++g+l+++v++ka+  +t  e++  R+gk +++++ +++++ +++l++s+ l +ga++++ v G+d  l  +l+ + +ilYt+ GGlkA++++ +++++i+++g++i+++v+  +  +   ++  +++  a+p+  +                    vd++   ++ ++ s   + ++v++++ + ++++++dq+++q ++aa+ a++ k ++l ++v+++l     + +Gl+a+al  d    l+ +  +++  + p+++  l++++ a+l++ +l++A++St s+  +++s+++t+D+Y+k+++++a ++k + ++++v+ +++i+++++ v+++       +   l++v+  +g++ ++++ ++ + l w+++ a GA++g iiG
  MMETSP1137-20121227|814_1 132 FNTAGRNVKTGLTASVIVSQWTWAATLLQSSNVAWSYGLSGpFWYAAGASIQVLLFGILAIEVKRKAPdCHTFLELVDVRWGK-LAHMVFMFFALCTNILVTSMLLLGGAAVMNAVSGIDKALCSFLMPWGVILYTLAGGLKATFLASYIHTAIIMIGLVIFIMVVYAKALDcdEDNQCDQLGGADPVY-ErlafitalplnntngyhqgpVDGNRGGSYVTMLSSDGLMFGVINIVGN-FGTVFVDQSYWQSAIAASPAAAHKGYLLGGLVWFALA----TSLGLAAVALNAD----LT-TDDANAGLVPPAAASILMGDFGAYLIIIMLFMAITSTGSAECIAVSSLITYDIYRKYFNPQATGQKILFVSRIVVGVFGILMGVLaVVLNSfetpsgGTISLGWVYLFMGVVIGSAVLPISFLLTWDKASAAGAISGAIIG 561
                679***********************************9873667899*******************99**************.************************************************************************************999965678999999999943.34889999*********99999999999999999999999999999999.9********************************9875....6689999999987....33.334699*********************************************************9999999888888888888888877765222221346899************************************99 PP

>> TIGR02121  Na_Pro_sym: sodium/proline symporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   2.3   2.2e-07   0.00029     129     205 ..     219     300 ..     200     318 .. 0.84
   2 !   31.2   3.5   1.4e-11     2e-08     312     440 ..     435     576 ..     392     633 .. 0.72

  Alignments for each domain:
  == domain 1    score: 17.5 bits;  conditional E-value: 2.2e-07
  TIGR02121 129 ilvff.....tlytssGlvaGgklfesafGldyklalligalivviytflGGflavswtdlvqgllmlvalvlvPivallkl 205
                +++ff     +l ts  l++G+ +++++ G+d  l+ ++    v++yt+ GG  a  ++  + ++++++ lv+  +v++ k 
  MMETSP1137-20121227|814_1 219 VFMFFalctnILVTSMLLLGGAAVMNAVSGIDKALCSFLMPWGVILYTLAGGLKATFLASYIHTAIIMIGLVIFIMVVYAKA 300
                44455111114556777899***************************************************99998888775 PP

  == domain 2    score: 31.2 bits;  conditional E-value: 1.4e-11
  TIGR02121 312 kvlfnPliaGlllaailaaimstissqllvsssalaedlykallkkeasekelvlvgrlsvlvvaiiaivlalnpdss...vlelvsyaWa..GfGaafgpvvl...lslywkrltragalagmvigavtv.ivwke....a 440
                 +l+  + a l++  ++ ai st s+  +  ss ++ d+y++ ++ +a+ ++++ v+r+ v v  i+  vla+  +s      + +s  W    +G + g++vl   + l w + + aga++g +ig +   i+w+      
  MMETSP1137-20121227|814_1 435 SILMGDFGAYLIIIMLFMAITSTGSAECIAVSSLITYDIYRKYFNPQATGQKILFVSRIVVGVFGILMGVLAVVLNSFetpSGGTISLGWVylFMGVVIGSAVLpisFLLTWDKASAAGAISGAIIGQIGAfIAWMVtaaaR 576
                556666666778888899*******************************************99988888888766553111345666666521569999999876668899*****************97615676644330 PP

>> TIGR02119  panF: sodium/pantothenate symporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.8   8.7   1.3e-08   1.7e-05      11     205 ..     107     298 ..      97     306 .. 0.74
   2 !   26.9   7.2   3.6e-10     5e-07     266     435 ..     388     567 ..     362     576 .. 0.80

  Alignments for each domain:
  == domain 1    score: 21.8 bits;  conditional E-value: 1.3e-08
  TIGR02119  11 lvlvfliaiyaskkkqktdsflqeyf.lGnrslgGfvlamtlvatyvsassfigGpGiayklGlGwvllamiqvptvylvlgvlGkkfailarkl.navtlvdllkaryknkllvllsslsllvfllsaivaqfiGGarllesltGlsyltalllfslsvliyvliGGfravvltdalqgivmllgtiilliavika 205
                ++ vf   ++  +kk ++ + ++e+f   +r++   + a  +v+ ++ a++++    +a+ +Gl   +  +   ++  l +g+l      + rk  +  t+ +l+  r+ + + +++  ++l    +  +++  +GGa +++++ G+    + +l+   v++y+l GG++a+ l+  +++ ++++g +i+ i v++a
  MMETSP1137-20121227|814_1 107 FFSVFTTFLVFLEKKFAGVEITSEHFnTAGRNVKTGLTASVIVSQWTWAATLLQSSNVAWSYGLSGPFWYAAGASIQVLLFGILAIE---VKRKApDCHTFLELVDVRWGKLAHMVFMFFALCT-NILVTSMLLLGGAAVMNAVSGIDKALCSFLMPWGVILYTLAGGLKATFLASYIHTAIIMIGLVIF-IMVVYA 298
                4444444444455566666678887735789999889999************************86666555555555666666533...3444426789999999999765554444444443.3445566789********************************************99999997665.555554 PP

  == domain 2    score: 26.9 bits;  conditional E-value: 3.6e-10
  TIGR02119 266 kalhraliigtivvgilmlgmhlvGvlgravlpdlkvsdkvipllalkvlpp.ilaGiflaaplaaimstvdsllllssstlikdlylnylekeakekkvkkisllitlllgllvllaal.....kppd....liiwlnlfalGGleaaflwplvlGlywekanatGalasilvG.vasyl 435
                 a h++ ++g +v   l  ++ l+ v   a l   + +  ++p  a  +l + + a +++   + ai st  +  + +ss +  d+y +y++ +a+ +k+  +s ++  + g+l+ ++a+     + p+     + w+ lf +G +    + p+ + l w+ka a Ga++  ++G +++++
  MMETSP1137-20121227|814_1 388 AAAHKGYLLGGLVWFALATSLGLAAVALNADLTTDDANAGLVPPAAASILMGdFGAYLIIIMLFMAITSTGSAECIAVSSLITYDIYRKYFNPQATGQKILFVSRIVVGVFGILMGVLAVvlnsfETPSggtiSLGWVYLF-MGVVIGSAVLPISFLLTWDKASAAGAISGAIIGqIGAFI 567
                57799999999999999999988888777777766666677887777777653778888999999*****************************************99999888655544111114433332236699998.7888888999******************99998455555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (752 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       219  (0.0533886); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.46u 0.20s 00:00:00.66 Elapsed: 00:00:00.71
# Mc/sec: 1397.97
//
Query:       MMETSP1137-20121227|815_1  [L=119]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (119 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        84  (0.0204778); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:01.29
# Mc/sec: 121.76
//
Query:       MMETSP1137-20121227|816_1  [L=452]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (452 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        65  (0.0158459); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.18s 00:00:00.45 Elapsed: 00:00:00.44
# Mc/sec: 1355.89
//
Query:       MMETSP1137-20121227|817_1  [L=614]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (614 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        89  (0.0216967); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.13s 00:00:00.51 Elapsed: 00:00:00.53
# Mc/sec: 1529.08
//
Query:       MMETSP1137-20121227|818_1  [L=90]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (90 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        50  (0.0121892); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.26
# Mc/sec: 456.89
//
Query:       MMETSP1137-20121227|819_1  [L=1408]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
          0 1385.3   0.0          0 1384.7   0.0    1.3  1  TIGR01369 CPSaseII_lrg: carbamoyl-phosphate synthase, large subunit
    3.7e-77  257.6   0.0    7.3e-77  256.6   0.0    1.5  1  TIGR01368 CPSaseIIsmall: carbamoyl-phosphate synthase, small subunit
    5.4e-15   51.8   1.5    3.4e-07   26.0   0.0    2.4  2  TIGR01235 pyruv_carbox: pyruvate carboxylase
    1.2e-12   45.8   0.0    6.5e-12   43.4   0.0    2.1  2  TIGR00566 trpG_papA: glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase
    2.6e-12   43.7   0.0    4.4e-12   42.9   0.0    1.2  1  TIGR01823 PabB-fungal: aminodeoxychorismate synthase
    3.6e-12   43.7   0.7    5.3e-07   26.7   0.0    2.3  2  TIGR01142 purT: phosphoribosylglycinamide formyltransferase 2
    9.7e-12   42.2   0.6    2.2e-05   21.3   0.0    2.2  2  TIGR00514 accC: acetyl-CoA carboxylase, biotin carboxylase subunit
    1.1e-10   38.9   0.1    1.5e-06   25.3   0.0    2.2  2  TIGR01205 D_ala_D_alaTIGR: D-alanine--D-alanine ligase
    2.7e-10   37.8   0.0    8.8e-10   36.1   0.0    1.9  2  TIGR00888 guaA_Nterm: GMP synthase (glutamine-hydrolyzing), N-terminal domain
    5.5e-09   32.1   0.3      4e-06   22.6   0.0    2.1  2  TIGR02712 urea_carbox: urea carboxylase
    1.2e-08   31.2   0.0    2.2e-08   30.4   0.0    1.3  1  TIGR01815 TrpE-clade3: anthranilate synthase
    2.1e-06   24.5   0.1    5.7e-06   23.1   0.0    1.6  2  TIGR03909 pyrrolys_PylC: pyrrolysine biosynthesis protein PylC
      5e-05   19.3   0.1      0.043    9.6   0.0    2.1  2  TIGR02068 cya_phycin_syn: cyanophycin synthetase
    0.00044   17.3   0.0       0.04   10.8   0.0    2.3  2  TIGR02144 LysX_arch: lysine biosynthesis enzyme LysX
      0.008   12.6   0.3        0.1    9.0   0.0    2.1  2  TIGR00337 PyrG: CTP synthase
  ------ inclusion threshold ------
       0.02   12.1   0.0       0.26    8.5   0.0    2.2  2  TIGR00768 rimK_fam: alpha-L-glutamate ligases, RimK family
      0.026   12.1   0.0       0.63    7.6   0.0    2.6  2  TIGR01855 IMP_synth_hisH: imidazole glycerol phosphate synthase, glutamine amidotransferase subunit


Domain annotation for each model (and alignments):
>> TIGR01369  CPSaseII_lrg: carbamoyl-phosphate synthase, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ! 1384.7   0.0         0         0       3    1051 ..     220    1258 ..     218    1259 .. 0.97

  Alignments for each domain:
  == domain 1    score: 1384.7 bits;  conditional E-value: 0
  TIGR01369    3 redikkvlviGsGpivigqAaEFDYsGsqalkalkeegievvLvnsniAtvmtdeeladkvYiePltveavekiiekErpDailltlGGqtaLnlaveleekGvLekygvkllGtkveaikkaedRekFkealkeineevakseivesveealeaaeeigyPvivRaaftlgGtGsgiaeneeelkelvekalkaspikqvlvekslagwkEiEyEvvRDskdnciivcniEnlDplGvHtGdsivvaPsqtLtdkeyqllRdaslkiirelgvegecnvqfaldPeskryvviEvnpRvsRssALAskAtGyPiAkvaaklavGysLdelkndvtketvAsfEPslDYvvvkiPrwdldkfekvdrklgtqmksvGEvmaigrtfeealqkalrsleekllglklkek.....eaesdeeleealkkpndrRlfaiaealrrgvsveevyeltkidrffleklkklvelekeleeeklkelkkellkkakklGfsdeqiaklvkvseaevrklrkelgivpvvkrvDtvaaEfeaktpYlYstyeee.....kddvevtekkkvlvlGsGpiRigqgvEFDycavhavlalreagyktilinynPEtvstDydiadrLyFeeltvedvldiiekekvegvivqlgGqtalnlakeleeagvkilGtsaesidraEdRekFsklldelgikqpkgkeatsveeakeiakeigyPvlvRpsyvlgGrameiveneeeleryleeavevskekPvlidkyledavEvdvDavadgeevliagileHiEeaGvHsGDstlvlppqklseevkkkikeivkkiakelkvkGllniqfvvkdeevyviEvnvRasRtvPfvskalgvplvklavkvllgkkleelekgvkkekksklvavkaavfsfsklagvdvvlgpemkstGEvmgigrdleeallkallaskakikkkgsvllsvkdkdkeellelakklaekglkvyategtakvleeagikaevvlkvseea.ekilellkeeeielvinltskkkk..aaekgykirreaveykvplvteletaeallea 1051
                 ++ ++kvl++GsG+++igqA+EFDYsGsqa+kalke   +++Lvn+niAtv+t+  +ad+vY++P+++ +ve+ii kErpD+ill++GGqtaLn+++ l++kGvL+ky+v++lGt+v ai+ +edR+ F ++l+eine++a +   ++ eea+eaa++igyPvi+Raaf+lgG  sg+a++e   +el+ekal+ s  +qvlve+s++gwkEiEyEvvRD++dnci+vcn+En+DplG+HtGdsivvaPsqtL++ ey +lR++++k+ r+lg++gecn+q+al+                 s ALAskAtGyP+A+vaakla+G +L  ++n+vt++t+A+fEPslDY+vvk+Prwd +kf+kv+  lg+ mksvGEvmaigr+f+ea+qka+r+   +++g++ +++     + +++e++ e+l +p+drR+fa+a a+ rg sv++vyeltki+ +fl+kl+ + e + e  + + + ++++ll+  k++Gfsd+qi+ +++  e++vr+lr ++givpvvk++Dt+aaEf+a+t+YlY ty++       ++ve+++    lvlG+G++Rig++vEFD+cav+++++lr  g+++i++nynPEtvstDyd++ +LyFee+++e+vldi+++e+ +g+iv++gGq+++nla  l+++gv+ilGts+e++draEdR+kFs++ld++g++qp+++e+++ve ak++++++gyP+l+Rpsyvl+G+am++v ++++l+r+l  a +vs+++Pv+i+k++e a+E++vDava+++++l ++i eH+E+aGvHsGD+tl+lp+qkl  e+++++k+i+++iakel+++G++niq+++kd++v+viE+nvRasRt+Pfvsk+l+v++++la+kv++g++++ ++    +  + ++v++ka++fsf++l g+d+vlg+em+stGEv+++g+d+++a+l++++++++ki+k++++l+ +  + k e++e a++l ++gl +y tegt ++++++g  +++++k  +++ +++ + + e++i+lvin++++k++  + ++gy irr+av+++v l+t++++a++l+e+
  MMETSP1137-20121227|819_1  220 EQPMQKVLLLGSGGLSIGQAGEFDYSGSQAIKALKEMRCRTILVNPNIATVQTSAGMADRVYFLPVNADIVEQIIAKERPDGILLQFGGQTALNCGIALQKKGVLDKYNVRVLGTPVAAIEATEDRDIFMQKLREINEKIAVGY-PRNDEEAVEAAAKIGYPVIMRAAFALGG--SGFAHDEVSCRELAEKALACS--SQVLVERSMKGWKEIEYEVVRDAADNCITVCNMENFDPLGIHTGDSIVVAPSQTLSNAEYMKLRSVAIKVARHLGIVGECNIQYALN---------------XXSXALASKATGYPLAYVAAKLAMGEHLPHIRNSVTRTTTACFEPSLDYCVVKFPRWDSNKFSKVSAGLGSAMKSVGEVMAIGRNFQEAMQKAIRMATPGVVGFQPPKEdsivdVFKTKEAIDEELANPSDRRIFALACAFARGDSVQSVYELTKINPWFLSKLQLIXEDQVEAPRITPTSISTDLLRLSKQQGFSDQQISMALQCAESDVRALRLSRGIVPVVKQIDTLAAEFPAATNYLYMTYNGSesdghAHEVEEKDMPGTLVLGCGAYRIGSSVEFDWCAVSCIRTLRAIGHRAIMVNYNPETVSTDYDECSTLYFEEISHERVLDIYQHENATGCIVSVGGQVPNNLALPLSASGVTILGTSPENVDRAEDRNKFSSILDRIGVDQPEWAELSTVELAKDFCRRVGYPCLIRPSYVLSGAAMKVVFSDADLQRFLIVACQVSPDHPVVISKFVEGAKEIEVDAVARDGQILNYAIAEHVENAGVHSGDATLILPAQKLFVETVRRVKKISRQIAKELRISGPFNIQLLAKDNDVKVIEANVRASRTFPFVSKTLKVDFIELATKVMVGAHVQPAS---ISLLDVDYVGIKAPMFSFTRLVGADPVLGVEMASTGEVASFGEDKYDAILTSMISAGFKIPKRSVMLCLGPLAAKMEFMESARELLAMGLDLYCTEGTFDFYTDKGLPVKLLHKPLSKTqPNAEDFIGEGKIDLVINIRDSKASeeSITNGYLIRRKAVDFSVCLLTDIKLATMLIES 1258
                 56789**************************************************************************************************************************************99875.68899**********************7..67*******************..***************************************************************************************...............5699***************************************************************************************************9877651111135677888999*******************************************999999999999******************************************************************9844544566677777899*************************************************************************************************************************************************************************************************************************************************************************************************************************955...4778999*********************************************************************************************************998766549999*************988765544889************************99986 PP

>> TIGR01368  CPSaseIIsmall: carbamoyl-phosphate synthase, small subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  256.6   0.0     3e-79   7.3e-77     157     359 ..       2     205 ..       1     207 [. 0.93

  Alignments for each domain:
  == domain 1    score: 256.6 bits;  conditional E-value: 3e-79
  TIGR01368 157 vstkeayeleqk....akkegkklrvvvidlGvKenilreLvkrgvevtvvpadtsaeeikklnpdgillsnGPGdPaaveeaietvkkllea.kiPifGIclGhqllalalgaktyklkfGhrGaNhpvkdlktgrveitsqNHgyavdeeslkeeelevthvnlnDgtveglehkelpvfsvQyHPeaspGphdteylFdefveli 359
                vs+k ++ + ++     + +gk++r++++d+G+K+ni+r ++++gve+ vvp+d++++  k+ + dg+++snGPGdP+++ ++i+ +k++le+  +PifGIclG+qllala+g ktyk+k+G+rGaN+p++d++t r++it+qNHgyavd  sl+++ +e  +vn nDgt+eg+ hk+ p+fsvQ+HPea +Gp+dt++lF+ f++++
  MMETSP1137-20121227|819_1   2 VSIKAPKLYVSHaparLSLSGKRMRIIAVDCGMKANIIRYFMSKGVELLVVPWDFDFS--KEEY-DGLFISNGPGDPTMCAPTIKFLKAALENrAVPIFGICLGNQLLALAAGCKTYKMKYGNRGANQPCIDTRTTRCYITAQNHGYAVDATSLPAG-WEQFFVNANDGTNEGIIHKTRPFFSVQFHPEACAGPTDTDFLFEMFLHRV 205
                56666666665333336678899**********************************9..6666.*************************999789*********************************************************9877.**********************************************9876 PP

>> TIGR01235  pyruv_carbox: pyruvate carboxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.4   0.1   4.2e-09     1e-06     137     277 ..     363     497 ..     325     503 .. 0.82
   2 !   26.0   0.0   1.4e-09   3.4e-07      96     330 ..     857    1085 ..     847    1122 .. 0.80

  Alignments for each domain:
  == domain 1    score: 24.4 bits;  conditional E-value: 4.2e-09
  TIGR01235 137 pvetleevldfakaiGyPvilkaayGGGGrGmrvvrseeevadaferakseakaafGndevyveklierpkhievqllgdkaGnvvhlferd..csvqrrhqkvvevaPakslsrevrdklaeaavklakevnyinaGtvefl 277
                 + + ee+++ a++iGyPvi++aa+  GG G      ++ev       +   ka     +v ve+ ++  k ie  ++ d a n + + + +    +       + vaP+++ls++   kl + a+k+a++ +  +   +++ 
  MMETSP1137-20121227|819_1 363 YPRNDEEAVEAAAKIGYPVIMRAAFALGGSGFA----HDEVSC----RELAEKALACSSQVLVERSMKGWKEIEYEVVRDAADNCITVCNMEnfDPLGIHTGDSIVVAPSQTLSNAEYMKLRSVAIKVARHLGIVGECNIQYA 497
                5567799999*********************84....455532....2222344446789************************9877654411456677788899*************************999888877775 PP

  == domain 2    score: 26.0 bits;  conditional E-value: 1.4e-09
  TIGR01235   96 ekaGivfiGPkaevldqlGdkvaarelaikagvPvvPgtdgpvetleevldfakaiGyPvilkaayGGGGrGmrvvrseeevadaferakseakaafGndevyveklierpkhievqllgdkaGnvvh..lferdcsvqrrhqkvvevaPakslsrevrdklaeaavklakevnyinaGtveflvdedtkfyfievnpriqvehtvteeitGidivkaqikvaeGaslpskklglpe 330 
                   +G++ +G ++e +d+  d+ +      ++gv   P   +   t+e ++df+++ GyP +++ +y   G  m+vv s+++++  +  a         +  v + k++e +k iev  ++  +G ++   + e              + Pa++l  e   ++ + + ++ake    +   ++ l ++ ++   ie n r         +   +d ++   kv+ Ga ++   ++l +
  MMETSP1137-20121227|819_1  857 SASGVTILGTSPENVDRAEDRNKFSSILDRIGVDQ-P-EWAELSTVELAKDFCRRVGYPCLIRPSYVLSGAAMKVVFSDADLQRFLIVA----CQVSPDHPVVISKFVEGAKEIEVDAVAR-DGQILNyaIAEHVENAGVHSGDATLILPAQKLFVETVRRVKKISRQIAKELRISGPFNIQLLAKD-NDVKVIEANVRASRTFPFVSKTLKVDFIELATKVMVGAHVQPASISLLD 1085
                 56799999999999999999999888888888875.3.3456789**********************************9987666555....55667899****************9984.465554113444444444455666789******99999*************99999999877655.58999******99999999999999999999999999988877766665 PP

>> TIGR00566  trpG_papA: glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.4   0.0   2.7e-14   6.5e-12      14     184 ..      37     195 ..      28     204 .. 0.71
   2 ?   -1.3   0.0       1.4   3.5e+02      35      92 ..     441     503 ..     426     511 .. 0.73

  Alignments for each domain:
  == domain 1    score: 43.4 bits;  conditional E-value: 2.7e-14
  TIGR00566  14 nlvqlleelgaevvvkrndsltlqeieallpllsivisPGPctPdeaaissleliehl..aGklPilGvClGhqalaqafGadvvraekvkhGkvseiehngaavfaglfn...PdalkatryhslvveaetldtllevtaleeeeieimairhrdlpleGvqfhPesilselGke 184
                n+++++  +g e++v   d +  +  e+      + is GP+ P   a   ++ ++ +  +  +Pi+G+ClG q la+a G +  ++   k+G        +++  ++  +    +++ +++ h   v+a +l++  e   ++ ++    +i h+  p++ vqfhPe++   + + 
  MMETSP1137-20121227|819_1  37 NIIRYFMSKGVELLVVPWDFDFSK--EEYD---GLFISNGPGDPTMCAPT-IKFLKAAleNRAVPIFGICLGNQLLALAAGCKTYKM---KYG--------NRGANQPCIDtrtTRCYITAQNHGYAVDATSLPAGWEQFFVNANDGTNEGIIHKTRPFFSVQFHPEACAGPTDTD 195
                777777777777776665544332..2222...3679*********9998.5555543224457*****************876655...333........3333333333221356888999***********99887777777777789*****************98765544 PP

  == domain 2    score: -1.3 bits;  conditional E-value: 1.4
  TIGR00566  35 tlqeieallplls.....ivisPGPctPdeaaissleliehlaGklPilGvClGhqalaqafG 92 
                t+ ++e++ pl       iv++P  +  +   ++  ++  ++a +l i+G C  + al     
  MMETSP1137-20121227|819_1 441 TVCNMENFDPLGIhtgdsIVVAPSQTLSNAEYMKLRSVAIKVARHLGIVGECNIQYALNXXSX 503
                555566655553333455999999999999999988999999999999999988888876655 PP

>> TIGR01823  PabB-fungal: aminodeoxychorismate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.9   0.0   1.8e-14   4.4e-12      53     202 ..      62     203 ..      47     212 .. 0.80

  Alignments for each domain:
  == domain 1    score: 42.9 bits;  conditional E-value: 1.8e-14
  TIGR01823  53 lfdaivvGPGPGdPnv.akdvgilsevfelanldevPvlGiCLGfqslcLaqGadierlplplhGqvsevktsdaaifegvssvkstryhsLyankesidsllalilledeedqilmsvkakkkPifGvqyhPesvksekesvkllknflk 202
                ++d + +  GPGdP   a  +  l+   e+     vP++GiCLG q l+La G +  ++++   G  +    + ++  + +++    + h   +   s      ++ ++ +++     + +k +P+f vq+hPe+++   ++  l++ fl+
  MMETSP1137-20121227|819_1  62 EYDGLFISNGPGDPTMcAPTIKFLKAALENR---AVPIFGICLGNQLLALAAGCKTYKMKYGNRGANQPCIDT-RTTRCYITA----QNHGYAVDATSLPAGWEQFFVNANDG-TNEGIIHKTRPFFSVQFHPEACAGPTDTDFLFEMFLH 203
                68899999******99999*******99999...8******************************87764333.334455544....44555666666655555666554444.3457889****************99998889988875 PP

>> TIGR01142  purT: phosphoribosylglycinamide formyltransferase 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.1     7e-06    0.0017      49     250 ..     285     490 ..     225     502 .. 0.70
   2 !   26.7   0.0   2.2e-09   5.3e-07     109     297 ..     884    1073 ..     840    1087 .. 0.79

  Alignments for each domain:
  == domain 1    score: 15.1 bits;  conditional E-value: 7e-06
  TIGR01142  49 lDadalravierekPdfivpeie.aiatdaLlelekeg......yevvPna.ratkltmnreglrrlaaeelglptakyefadsleeleeavekiGfPcvvkpvmsssGkGqsvvkgpediekaWeeakegargsaerviveefidfdveitlltvravdg.vvefc.....aPiGhrqedgdykesWqPqelsekaleeakeiakrvvdaLGGlG 250
                ++ad ++++i +e+Pd i+ +     a++  ++l+k+g      ++v+ +   a++ t +r+   + + e  + +  +  +    ee  ea++kiG+P+++++  +  G G +     +++ ++ +e +e+a + +++v+ve  ++   ei   +vr + +  ++ c     +P+G +   gd       q+ls++   + +++a +v   LG  G
  MMETSP1137-20121227|819_1 285 VNADIVEQIIAKERPDGILLQFGgQTALNCGIALQKKGvldkynVRVLGTPvAAIEATEDRDIFMQKLREI-NEKI-AVGYPRNDEEAVEAAAKIGYPVIMRAAFALGGSGFA----HDEV-SC-RELAEKALACSSQVLVERSMKGWKEIEYEVVRDAADnCITVCnmenfDPLGIH--TGDSIVVAPSQTLSNAEYMKLRSVAIKVARHLGIVG 490
                4689999*********9997764223444444444444444432788877514678899999776655443.3333.3467788899*****************999998853....3444.34.44557788889999999998877777777777654445555522222799965..5666777777899*****************999776 PP

  == domain 2    score: 26.7 bits;  conditional E-value: 2.2e-09
  TIGR01142  109 aeelglptakyefadsleeleeavekiGfPcvvkpvmsssGkGqsvvkgpediekaWeeakegargsaerviveefidfdveitlltvravdgvvefcaPiGhrqe....dgdykesWqPqelsekaleeakeiakrvvdaLGGlGlfGvelfvkgdevifsevsprPhdtglvtlisqelsefelhvrailG 297 
                  +++g+   ++   +++e  ++ ++++G+Pc+++p    sG   +vv +++d+++    a +   + ++ v++ +f++   ei + +v + ++++++ a   h+++     gd +     q+l  ++++++k+i++++ ++L   G f ++l+ k+++v + e  +r   t      + ++   el  + ++G
  MMETSP1137-20121227|819_1  884 LDRIGVDQPEWAELSTVELAKDFCRRVGYPCLIRPSYVLSGAAMKVVFSDADLQRFLIVACQV--SPDHPVVISKFVEGAKEIEVDAVARDGQILNY-AIAEHVENagvhSGDATLILPAQKLFVETVRRVKKISRQIAKELRISGPFNIQLLAKDNDVKVIEANVRASRTFPFVSKTLKVDFIELATKVMVG 1073
                 467788888888888999999**********************************99999875..45678999**********99999887774444.334444431111345555566689*************************************9999999988775444444455555666666666 PP

>> TIGR00514  accC: acetyl-CoA carboxylase, biotin carboxylase subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.2   4.8e-07   0.00012     136     279 ..     362     499 ..     321     504 .. 0.73
   2 !   21.3   0.0     9e-08   2.2e-05      96     321 ..     857    1076 ..     848    1141 .. 0.85

  Alignments for each domain:
  == domain 1    score: 18.9 bits;  conditional E-value: 4.8e-07
  TIGR00514 136 GlvedveeaveiakeiGypviikataGGGGrGlrvvreedelvkslkaakaeakaaf.nndgvylekfienprhveiqvladkyGnvvylgerdc..siqrrkqklleeapspaltselrkkiGeaavkaaksigytgaGtveflld 279
                G   + eeave a +iGypvi++a+   GG G+     +de+       ++ a+ a+   ++v +e+ ++  + +e +v+ d   n + +++ +    +   +   +  aps +l++    k+ ++a+k+a+++g +g   +++ l+
  MMETSP1137-20121227|819_1 362 GYPRNDEEAVEAAAKIGYPVIMRAAFALGGSGFA----HDEVSC-----RELAEKALaCSSQVLVERSMKGWKEIEYEVVRDAADNCITVCNMENfdPLGIHTGDSIVVAPSQTLSNAEYMKLRSVAIKVARHLGIVGECNIQYALN 499
                4567889************************974....444432.....22222222035789***********************9998765532256677777888899999999999999999*****9999999988888766 PP

  == domain 2    score: 21.3 bits;  conditional E-value: 9e-08
  TIGR00514   96 eesgltfiGpsaeairlmGdkvsaketmkkagvpvvpGsdGlvedveeaveiakeiGypviikataGGGGrGlrvvreedelvkslkaakaeakaafnndgvylekfienprhveiqvla.dkyGnvvylger..dcsiqrrkqklleeapspaltselrkkiGeaavkaaksigytgaGtveflldkegefyflemntriqvehpvtemvtgvdlikeqirvakGekl 321 
                   sg+t +G s+e +    d++    ++ ++gv     ++  +++ve a++  +++Gyp +i+ +    G  ++vv ++++l++ l +a + +     ++ v + kf+e  + +e+  +a d +     ++e   +  +      l+   p+  l  e  +++ + + ++ak++   g   +++l + +++   +e n r     p   +   vd+i+   +v  G ++
  MMETSP1137-20121227|819_1  857 SASGVTILGTSPENVDRAEDRNKFSSILDRIGVDQPEWAE--LSTVELAKDFCRRVGYPCLIRPSYVLSGAAMKVVFSDADLQRFLIVACQVS----PDHPVVISKFVEGAKEIEVDAVArDGQILNYAIAEHveNAGVHSGDATLI--LPAQKLFVETVRRVKKISRQIAKELRISGPFNIQLLAK-DNDVKVIEANVRASRTFPFVSKTLKVDFIELATKVMVGAHV 1076
                 5689999*************************98744444..56789999**********************************998876543....467899*************9988344433344666522455666666665..7999999999999************9999999987766.88899************************999999999876 PP

>> TIGR01205  D_ala_D_alaTIGR: D-alanine--D-alanine ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.4   0.0   9.9e-05     0.024     133     265 ..     366     491 ..     319     503 .. 0.68
   2 !   25.3   0.0   6.1e-09   1.5e-06     104     285 ..     874    1046 ..     855    1075 .. 0.81

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 9.9e-05
  TIGR01205 133 kseeaekekleklglpvivKpa.reGSSvGvskvkseeeleealeeafeydeevlveeaikg.relevsvlekeealpiieiveekekedFydYeaKYldgsaelvipae.lseeeeekikelalkaykalgcrgl 265
                ++e + +e+++k+g+pvi ++a  +G S     +++e   +e +e+a+  +++vlve+ +kg +e+e  v++ + a ++i +++ ++    +d     +  ++ +v p + ls++e+ k++++a+k+ ++lg  g 
  MMETSP1137-20121227|819_1 366 NDE-EAVEAAAKIGYPVIMRAAfALGGS---GFAHDEVSCRELAEKALACSSQVLVERSMKGwKEIEYEVVR-DAADNCITVCNMEN----FDPLGIHTG-DSIVVAPSQtLSNAEYMKLRSVAIKVARHLGIVGE 491
                222.34568899********98345544...346777788888999*************88768********.88899999999999....444444444.4555555556****************999988765 PP

  == domain 2    score: 25.3 bits;  conditional E-value: 6.1e-09
  TIGR01205  104 smdKlltKlllkalglpvadyavlerkeekseeaekekleklglpvivKpareGSSvGvskvkseeeleealeeafey..deevlveeaikg.relevsvlekeealpiieiveekekedFydYeaKYldgsaelvipae.lseeeeekikelalkaykalgcrglaRvDfflekegeiylnEiNt 285 
                 + d+  + ++l++ g++++++a l+  e + ++       ++g+p++++p+   S   +++v s+ +l+++l  a ++  d+ v++ ++++g +e+ev ++ ++ ++   +i e+ e       +a   +g+a l++pa+ l  e  +++k+++ ++ k+l  +g   +  + +++  + + E N 
  MMETSP1137-20121227|819_1  874 AEDRNKFSSILDRIGVDQPEWAELSTVELA-KD----FCRRVGYPCLIRPSYVLSGAAMKVVFSDADLQRFLIVACQVspDHPVVISKFVEGaKEIEVDAVARDGQILNYAIAEHVE-------NAGVHSGDATLILPAQkLFVETVRRVKKISRQIAKELRISGPFNIQLLAKDN-DVKVIEANV 1046
                 56777778899*************544443.33....56679****************************9988877633788******88648****9999999999999999999.......88899999999999999****************************9999966.899999884 PP

>> TIGR00888  guaA_Nterm: GMP synthase (glutamine-hydrolyzing), N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.1   0.0   3.7e-12   8.8e-10      14     184 ..      38     205 ..      27     209 .. 0.71
   2 ?   -3.8   0.0       6.5   1.6e+03      34      75 ..     291     333 ..     284     334 .. 0.59

  Alignments for each domain:
  == domain 1    score: 36.1 bits;  conditional E-value: 3.7e-12
  TIGR00888  14 iaRrlrelgvyselvpatttleeikevepkgiilsGgPes..vkaenaekvdekifelgvPvlGiCyGmqllakalGgeveraekreygkaelevldedelfkglekelkvWmshgDkvkelPegfkvl.aksencpvaalkkeekklyGvqfhPevthtekGke.llenfvkdv 184
                i R     gv+  +vp++    +  + e  g+ +s gP      a   + +++++ +  vP++GiC+G qlla a G ++ + +  + g  +  ++ ++     +  + + ++    + ++lP g++    +++    + + +++++++ vqfhPe     + ++ l+e f++ v
  MMETSP1137-20121227|819_1  38 IIRYFMSKGVELLVVPWDF---DFSKEEYDGLFISNGPGDptMCAPTIKFLKAALENRAVPIFGICLGNQLLALAAGCKTYKMKYGNRGANQPCIDTRT-TRCYITAQNHGYAV---DATSLPAGWEQFfVNANDGTNEGIIHKTRPFFSVQFHPEACAGPTDTDfLFEMFLHRV 205
                6677777777778888887...556677899****999751134455566677788999********************99999888888777666544.33444444443333...34678888876415566688999****************9876655541556676665 PP

  == domain 2    score: -3.8 bits;  conditional E-value: 6.5
  TIGR00888  34 leeikevepkgiilsGgPesvka.enaekvdekifelgvPvlG 75 
                ++ i + +p gi+l  g +   + + a + +  + + +v vlG
  MMETSP1137-20121227|819_1 291 EQIIAKERPDGILLQFGGQTALNcGIALQKKGVLDKYNVRVLG 333
                3446678899999985555444404444555555567777777 PP

>> TIGR02712  urea_carbox: urea carboxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.5   0.0   0.00059      0.14     139     221 ..     367     441 ..     360     497 .. 0.71
   2 !   22.6   0.0   1.6e-08     4e-06      13     326 ..     784    1082 ..     781    1128 .. 0.82

  Alignments for each domain:
  == domain 1    score: 7.5 bits;  conditional E-value: 0.00059
  TIGR02712 139 leealeaaeeigyPvmlkstaGGGGiGlqkvdsaeeleeafesvkrlgesff.sdagvflekfvekarhvevqilGdgkGkvva 221
                 eea+eaa++igyPv+++++   GG G+ +     e+     s ++l+e+ +  ++ v +e+ ++  + +e  ++ d + + ++
  MMETSP1137-20121227|819_1 367 DEEAVEAAAKIGYPVIMRAAFALGGSGFAHD----EV-----SCRELAEKALaCSSQVLVERSMKGWKEIEYEVVRDAADNCIT 441
                589****************999999887542....22.....233444433313566777777777777777777776666655 PP

  == domain 2    score: 22.6 bits;  conditional E-value: 1.6e-08
  TIGR02712   13 avriirtlkklgirsvavysdadkasqhvkdadeavalgeataaesylkidkileiakktgaeaiiPGyGflsenaafaeaceaagivfvGPtpeqlrklGlkhtarelaeaagvPllpGtgllesleealeaaeeigyPvmlkstaGGGGiGlqkvdsaeeleeafesvkrlgesffsdagvflekfvekarhvevq.ilGdgkGkvvalger..dCslqrrnqkvveetPaPnlpeevrekllkaaeklaeavnyrsaGtvefiydekrdefyflevntrlqvehpvteavtgldlvewmvrlaageapdldelk 326 
                 av  irtl+ +g r++ v  +++  s+   d de+ +l  ++     ++ +++l+i ++ +a+  i   G    n ++a  ++a g++ +G +pe++++   + +   +  + gv   + ++ l+++e a++ ++++gyP +++ +    G  ++ v s ++l++ f  v     +   d  v + kfve a+ +ev  +  dg+    a+ e   +  +   +  ++   Pa +l  e+ ++++k ++++a+++    +G  +    +k +++  +e n r     p   +   +d++e+  ++  g++ + ++++
  MMETSP1137-20121227|819_1  784 AVSCIRTLRAIGHRAIMVNYNPETVST---DYDECSTLYFEE-----ISHERVLDIYQHENATGCIVSVGGQVPN-NLALPLSASGVTILGTSPENVDRAEDRNKFSSILDRIGVDQPEWAE-LSTVELAKDFCRRVGYPCLIRPSYVLSGAAMKVVFSDADLQR-FLIVA---CQVSPDHPVVISKFVEGAKEIEVDaVARDGQILNYAIAEHveNAGVHSGDATLI--LPAQKLFVETVRRVKKISRQIAKELRI--SGPFNIQLLAKDNDVKVIEANVRASRTFPFVSKTLKVDFIELATKVMVGAHVQPASIS 1082
                 778899999999999999999988885...567776666555.....45799****9999998766666554443.4677899********************************9877666.699*************************************86.66664...4556799****************8356799887777777611555555555555..7********************998865..55555556688899999***********************999888877777666655 PP

>> TIGR01815  TrpE-clade3: anthranilate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.4   0.0     9e-11   2.2e-08     515     688 ..      21     187 ..       6     196 .. 0.76

  Alignments for each domain:
  == domain 1    score: 30.4 bits;  conditional E-value: 9e-11
  TIGR01815 515 eGkrillvdhedsfvhtlanylrqtGasvttlrhsvaeelldeerpdlvvlspGpGrpkdfdvketik...aa.lardlpvfGvclGlqglveafGGeldvlaepvhGkasrirvlepdvlfaglpeeltvGryhslfarsdrlpkelk.vtaesedgvimaiehrklpvaavqfhpes 688
                +Gkr+ ++  +  +   +  y+ + G  +  +   +    +++e  d + +s GpG p+    + tik   aa  +r +p+fG+clG q l+ a G +  ++++   G +     + +       ++     + h    ++  lp+       +++dg+  +i h++ p  +vqfhpe+
  MMETSP1137-20121227|819_1  21 SGKRMRIIAVDCGMKANIIRYFMSKGVELLVVPWDF---DFSKEEYDGLFISNGPGDPTMC--APTIKflkAAlENRAVPIFGICLGNQLLALAAGCKTYKMKYGNRGANQPCIDTRT-------TRCYITAQNHGYAVDATSLPAGWEqFFVNANDGTNEGIIHKTRPFFSVQFHPEA 187
                566666666666666666666666666665555544...37888899999********864..444432214415799**************************99998765554444.......56666778999999******98752567889**********************7 PP

>> TIGR03909  pyrrolys_PylC: pyrrolysine biosynthesis protein PylC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0       1.7     4e+02     201     231 ..     459     490 ..     388     499 .. 0.79
   2 !   23.1   0.0   2.3e-08   5.7e-06     124     278 ..     911    1072 ..     900    1081 .. 0.75

  Alignments for each domain:
  == domain 1    score: -2.7 bits;  conditional E-value: 1.7
  TIGR03909 201 rvlaPae.ldlekkdefrelalklaaelnlkG 231
                 v+aP + l+     ++r++a+k+a++l + G
  MMETSP1137-20121227|819_1 459 IVVAPSQtLSNAEYMKLRSVAIKVARHLGIVG 490
                57888763566777899999****99998877 PP

  == domain 2    score: 23.1 bits;  conditional E-value: 2.3e-08
  TIGR03909  124 efPvlvkPscesssegvriindrkeleell....klesednlvveeyleGes.vslevi...GdkgnyavvkiteleidatydCkrvlaPa.eldlekkdefrelalklaaelnlkGimdvevilheeklkvleidarlPsqtPivvykssGinlvelllkaft 278 
                 ++P l++Ps   s   ++++ ++ +l+++l    +      +v+  ++eG   + ++ +   G+  nya+ +  e     + d   ++ Pa +l +e  ++ ++++ ++a+el + G  +++ + +++++kv+e + r  s+t   v k+  ++++el +k  +
  MMETSP1137-20121227|819_1  911 GYPCLIRPSYVLSGAAMKVVFSDADLQRFLivacQVSPDHPVVISKFVEGAKeIEVDAVardGQILNYAIAEHVENAGVHSGDA-TLILPAqKLFVETVRRVKKISRQIAKELRISGPFNIQLLAKDNDVKVIEANVRA-SRTFPFVSKTLKVDFIELATKVMV 1072
                 68**************************9622212233456899******6414444441223333566555555544555688.5666661578999***************************************96.566556777777888887776655 PP

>> TIGR02068  cya_phycin_syn: cyanophycin synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.6   0.0   0.00018     0.043     236     297 ..     366     424 ..     334     436 .. 0.83
   2 !    7.5   0.0   0.00074      0.18     207     296 ..     870     960 ..     861     973 .. 0.81

  Alignments for each domain:
  == domain 1    score: 9.6 bits;  conditional E-value: 0.00018
  TIGR02068 236 saeeaeeaaeelGyPvvikPldGnhGrGvtin.iesreeiesayeaakeesseviverfikGr 297
                + eea+eaa ++GyPv+++      G G + + ++ re +e+a       ss+v+ver +kG 
  MMETSP1137-20121227|819_1 366 NDEEAVEAAAKIGYPVIMRAAFALGGSGFAHDeVSCRELAEKAL----ACSSQVLVERSMKGW 424
                6789************************9876377777777665....57999******9994 PP

  == domain 2    score: 7.5 bits;  conditional E-value: 0.00074
  TIGR02068 207 aveiasDkeltkklLkaaGvPvPeGtvvqsaeeaeeaaeelGyPvvikPldGnhGrGvtiniesreeiesayeaakees..seviverfikG 296
                 v+ a+D++   ++L+  Gv  Pe   ++++e a++    +GyP  i+P     G  +++  +   +++    +a ++s  + v++ +f++G
  MMETSP1137-20121227|819_1 870 NVDRAEDRNKFSSILDRIGVDQPEWAELSTVELAKDFCRRVGYPCLIRPSYVLSGAAMKVVFSDA-DLQRFLIVACQVSpdHPVVISKFVEG 960
                578899*******************************************9877777777655444.35555566666665556777777777 PP

>> TIGR02144  LysX_arch: lysine biosynthesis enzyme LysX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.0     0.022       5.3     110     130 ..     366     386 ..     326     394 .. 0.83
   2 !   10.8   0.0   0.00017      0.04      67     131 ..     855     920 ..     829     954 .. 0.84

  Alignments for each domain:
  == domain 1    score: 3.9 bits;  conditional E-value: 0.022
  TIGR02144 110 dkeaalklaeelGyPvvlKPv 130
                ++e+a+++a ++GyPv+++ +
  MMETSP1137-20121227|819_1 366 NDEEAVEAAAKIGYPVIMRAA 386
                568999***********9865 PP

  == domain 2    score: 10.8 bits;  conditional E-value: 0.00017
  TIGR02144  67 lleelGvkvin.sseviiacgdKvfttlkLakagvPtPktivafdkeaalklaeelGyPvvlKPve 131
                 l ++Gv+++  s e + +++d+   +++L + gv +P+++     e a+   +++GyP +++P  
  MMETSP1137-20121227|819_1 855 PLSASGVTILGtSPENVDRAEDRNKFSSILDRIGVDQPEWAELSTVELAKDFCRRVGYPCLIRPSY 920
                56677777775156789999***999**************************************75 PP

>> TIGR00337  PyrG: CTP synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.0   0.0   0.00041       0.1     342     389 ..      60     109 ..      23     140 .. 0.81
   2 ?    1.4   0.1     0.086        21     496     524 ..     174     202 ..     157     204 .. 0.80

  Alignments for each domain:
  == domain 1    score: 9.0 bits;  conditional E-value: 0.00041
  TIGR00337 342 leevdgilvPGGfGerGv.eGkilaikyarenk.iPflGiclGlqvavie 389
                +ee dg+++  G G+  +    i+  k a en+ +P++GiclG q+ ++ 
  MMETSP1137-20121227|819_1  60 KEEYDGLFISNGPGDPTMcAPTIKFLKAALENRaVPIFGICLGNQLLALA 109
                4669999999999997752678999*****99659**********97765 PP

  == domain 2    score: 1.4 bits;  conditional E-value: 0.086
  TIGR00337 496 dhpffvatqfhPefksrveepsklflglv 524
                + + f+++qfhPe  + +++++ lf  ++
  MMETSP1137-20121227|819_1 174 KTRPFFSVQFHPEACAGPTDTDFLFEMFL 202
                3444669*************999998886 PP

>> TIGR00768  rimK_fam: alpha-L-glutamate ligases, RimK family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.0      0.24        58      81     137 ..     338     393 ..     310     410 .. 0.71
   2 ?    8.5   0.0    0.0011      0.26      68     175 ..     856     963 ..     837    1066 .. 0.80

  Alignments for each domain:
  == domain 1    score: 0.7 bits;  conditional E-value: 0.24
  TIGR00768  81 aienagdKllssalLakaglplpktlvagseeeakklieeigfPvvlKpvfGswGkl 137
                aie+ +d+ + +++L + +  +   +   + eea +++ +ig+Pv+++ +f   G +
  MMETSP1137-20121227|819_1 338 AIEATEDRDIFMQKLREINEKI-AVGYPRNDEEAVEAAAKIGYPVIMRAAFALGGSG 393
                5666666666666665543222.2333447888999999********9998777765 PP

  == domain 2    score: 8.5 bits;  conditional E-value: 0.0011
  TIGR00768  68 leslGveviN.ssqaienagdKllssalLakaglplpktlvagseeeakklieeigfPvvlKpvfGswGklvvlvedkqeaekllealeqlkekykvflvQeyikksgg 175
                l + Gv ++  s++ +++a+d+ + s++L + g+++p+++ +   e ak++  ++g+P  ++p     G ++  v   + ++  l    q+ +++ v ++ ++++ +++
  MMETSP1137-20121227|819_1 856 LSASGVTILGtSPENVDRAEDRNKFSSILDRIGVDQPEWAELSTVELAKDFCRRVGYPCLIRPSYVLSGAAMKVVFSDADLQRFLIVACQVSPDHPV-VISKFVEGAKE 963
                5566777664268999*********************************************999888888887777777777777666666665554.45677776665 PP

>> TIGR01855  IMP_synth_hisH: imidazole glycerol phosphate synthase, glutamine amidotransferase subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   0.0    0.0026      0.63      62      85 ..      84     107 ..      57     117 .. 0.85
   2 ?    1.1   0.0      0.26        63     171     183 ..     175     187 ..     142     194 .. 0.76

  Alignments for each domain:
  == domain 1    score: 7.6 bits;  conditional E-value: 0.0026
  TIGR01855  62 llaekvvkkkkpvlgiClGmQllf 85 
                 l++ ++++  p+ giClG Qll+
  MMETSP1137-20121227|819_1  84 FLKAALENRAVPIFGICLGNQLLA 107
                45667788899***********97 PP

  == domain 2    score: 1.1 bits;  conditional E-value: 0.26
  TIGR01855 171 kdnivgvQFHPEk 183
                +  +++vQFHPE 
  MMETSP1137-20121227|819_1 175 TRPFFSVQFHPEA 187
                456899*****96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1408 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       126  (0.0307167); expected 82.0 (0.02)
Passed bias filter:                      100  (0.0243784); expected 82.0 (0.02)
Passed Vit filter:                        24  (0.0058508); expected 4.1 (0.001)
Passed Fwd filter:                        17  (0.00414432); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              17  [number of targets reported over threshold]
# CPU time: 1.35u 0.19s 00:00:01.54 Elapsed: 00:00:00.92
# Mc/sec: 2020.01
//
Query:       MMETSP1137-20121227|820_1  [L=242]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.6e-15   55.1   1.4    3.9e-11   40.6   0.6    2.0  2  TIGR01628 PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family
    1.4e-12   45.2   0.5    9.7e-10   35.8   0.1    2.1  2  TIGR01622 SF-CC1: splicing factor, CC1-like family
      4e-11   40.4   0.7    7.7e-06   23.0   0.1    2.1  2  TIGR01649 hnRNP-L_PTB: hnRNP-L/PTB/hephaestus splicing factor family
    7.3e-10   35.7   2.0    9.8e-05   18.8   0.0    2.4  2  TIGR01642 U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor
    1.3e-08   32.6   0.0     0.0013   16.2   0.1    2.0  2  TIGR01661 ELAV_HUD_SF: ELAV/HuD family splicing factor
    2.9e-08   30.8   2.7     0.0004   17.1   1.3    2.1  2  TIGR01648 hnRNP-R-Q: hnRNP-R, Q splicing factor family
    1.5e-06   25.9   0.0     0.0016   16.0   0.0    2.1  2  TIGR01659 sex-lethal: sex-lethal family splicing factor
  ------ inclusion threshold ------
        3.5    3.0   8.0          5    2.5   4.9    1.5  2  TIGR02102 pullulan_Gpos: pullulanase, extracellular


Domain annotation for each model (and alignments):
>> TIGR01628  PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.6   0.6   7.7e-14   3.9e-11     287     409 ..       9     137 ..       4     169 .. 0.75
   2 !   13.3   0.0   1.4e-05    0.0071     181     252 ..     170     237 ..     167     242 .] 0.79

  Alignments for each domain:
  == domain 1    score: 40.6 bits;  conditional E-value: 7.7e-14
  TIGR01628 287 NlYvkNlddtvddekLre....lFeefGeitSakvmldekekSkgFGFVcfssqeeAnkAvtelhgkilngkPLyvalAqrkeqRkarLqqqfmqasaesrql....sigspvigaanisgrhqaaqqqav 409
                 +Yv Nl+++v +  L++     F++fG i  +     ++ + +g  FV f + + A++Av++++g  +  kP+ +++A+ k +  ++L   +++++   r+     +  ++  ga ++ +++ aa ++  
  MMETSP1137-20121227|820_1   9 TVYVNNLNEKVSKDALKKslyaAFSQFGPILDVV--AVKNFRMRGQAFVVFRDISSATAAVKQMQGFPFYDKPMRLSYAKTKSDASSKLDGTYQEKHKAERAAkrkaEREEKKAGANKPKAVPAAAAAPVE 137
                58**********999998444469******8754..4445689***********************************************99966333333332332666666666655555544444433 PP

  == domain 2    score: 13.3 bits;  conditional E-value: 1.4e-05
  TIGR01628 181 lYvKnlddsvtedklrelFakfGeitSaivkkdeknrkrgfafvnyekaedAkkAveelngkkitlaatgki 252
                l+v nl+d+v+e  l  lF++f     +        ++ g afv++e++ +   A+  l++ kit ++  ki
  MMETSP1137-20121227|820_1 170 LFVENLPDQVNEMMLSMLFQQFPGFKEVRLVPG---KS-GIAFVEFENEMQSGVAMAGLQNFKITPTNLMKI 237
                789999999999999999999998887766554...43.668999999999999999999999985555554 PP

>> TIGR01622  SF-CC1: splicing factor, CC1-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.8   0.1   1.9e-12   9.7e-10     217     341 ..       5     125 ..       1     142 [. 0.74
   2 !    7.7   0.0   0.00064      0.33     218     287 ..     166     230 ..     140     241 .. 0.64

  Alignments for each domain:
  == domain 1    score: 35.8 bits;  conditional E-value: 1.9e-12
  TIGR01622 217 iadlkLYvGnlhfnitEqeLrq....iFepFGeielvqlqkDpetGrskGyGFiqFsdaeeakeAleklNGlelAGReikvglasDvteesdaslaskfedsfdeseqsgldlnteereqldekldrdd 341
                ++   +Yv nl   ++ + L++     F  FG+i++v   k+    r +G  F+ F+d + a +A +++ G+    ++++ ++    +++sda   sk  ++++e++++  + + +++ + ++++++  
  MMETSP1137-20121227|820_1   5 APRETVYVNNLNEKVSKDALKKslyaAFSQFGPILDVVAVKNF---RMRGQAFVVFRDISSATAAVKQMQGFPFYDKPMRLSY---AKTKSDA--SSKLDGTYQEKHKAERAAKRKAEREEKKAGANKP 125
                567789**********999986433369999****99877654...77***********************************...5556666..4455555555555555555555555555666554 PP

  == domain 2    score: 7.7 bits;  conditional E-value: 0.00064
  TIGR01622 218 adlkLYvGnlhfnitEqeLrqiFepFGeielvqlqkDpetGrskGyGFiqFsdaeeakeAleklNGlelA 287
                ++  L+v nl  ++ E +L  +F+ F   + v+l      G+s G  F++F++  ++  A+  l  + + 
  MMETSP1137-20121227|820_1 166 PNAILFVENLPDQVNEMMLSMLFQQFPGFKEVRLVP----GKS-GIAFVEFENEMQSGVAMAGLQNFKIT 230
                556677777777777777777777777777777753....444.67777777777777776666666665 PP

>> TIGR01649  hnRNP-L_PTB: hnRNP-L/PTB/hephaestus splicing factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0   1.6e-06   0.00081       5      59 ..      10      71 ..       6      78 .. 0.73
   2 !   23.0   0.1   1.5e-08   7.7e-06     252     362 ..     121     230 ..      75     242 .] 0.65

  Alignments for each domain:
  == domain 1    score: 16.3 bits;  conditional E-value: 1.6e-06
  TIGR01649  5 vHvRnlpeevv....eadlvelliefGkvsyvlvlkg...krqAlvEfedeesAkalVnfat 59
               v v nl e+v        l ++ ++fG++  v+ +k+   + qA+v f d+ sA+a+V+ + 
  MMETSP1137-20121227|820_1 10 VYVNNLNEKVSkdalKKSLYAAFSQFGPILDVVAVKNfrmRGQAFVVFRDISSATAAVKQMQ 71
               666666666651111456789999******9999986222558*************998775 PP

  == domain 2    score: 23.0 bits;  conditional E-value: 1.5e-08
  TIGR01649 252 galaplalgdraglaaglapsreslalasaalapaisstapaasglgsVllvsnLeeekvtpdalFnlfgvYGdvervkilknkketalvemadpqqaqlalthLdkvklf 362
                ga  p a++  a  ++  +++ ++++++ +++ ++    +pa   ++++l+v nL   +v+  +l  lf ++   + v+++  k + a+ve+ ++ q   a+  L++ k+ 
  MMETSP1137-20121227|820_1 121 GANKPKAVPAAAAAPVEEEDAAPEEEAETTPAETPKVPSTPAVVLPNAILFVENLP-DQVNEMMLSMLFQQFPGFKEVRLVPGKSGIAFVEFENEMQSGVAMAGLQNFKIT 230
                66666666666666666666666666666666655555666666777777777774.457777777777777777777777777777777777777777777777776653 PP

>> TIGR01642  U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.0   1.9e-07   9.8e-05     297     373 ..       8      85 ..       3      96 .. 0.86
   2 !   16.1   0.0   1.3e-06   0.00066     298     366 ..     169     232 ..     134     240 .. 0.84

  Alignments for each domain:
  == domain 1    score: 18.8 bits;  conditional E-value: 1.9e-07
  TIGR01642 297 dklyignLPldlkddqvkeLL....esFGdLkaFnliKdlatGlsKGyaFceykdssvtdlAiaaLnGiklgdkkLnvkrA 373
                + +y++nL  ++  d +k  L     +FG+++    +K+      +G aF++++d+s +  A++ ++G+  +dk +    A
  MMETSP1137-20121227|820_1   8 ETVYVNNLNEKVSKDALKKSLyaafSQFGPILDVVAVKNFR---MRGQAFVVFRDISSATAAVKQMQGFPFYDKPMRLSYA 85 
                579*********999998866344479***********996...69****************************8877666 PP

  == domain 2    score: 16.1 bits;  conditional E-value: 1.3e-06
  TIGR01642 298 klyignLPldlkddqvkeLLesFGdLkaFnliKdlatGlsKGyaFceykdssvtdlAiaaLnGiklgdk 366
                 l+++nLP ++++  +  L ++F   k   l+     G+s G aF+e+++   + +A+a+L+ +k+   
  MMETSP1137-20121227|820_1 169 ILFVENLPDQVNEMMLSMLFQQFPGFKEVRLVP----GKS-GIAFVEFENEMQSGVAMAGLQNFKITPT 232
                59**********************999999996....554.9*******************99998654 PP

>> TIGR01661  ELAV_HUD_SF: ELAV/HuD family splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.1   2.5e-06    0.0013     272     348 ..      10      88 ..       3      94 .. 0.79
   2 !   14.7   0.0   7.1e-06    0.0036     208     336 ..     109     230 ..      88     241 .. 0.75

  Alignments for each domain:
  == domain 1    score: 16.2 bits;  conditional E-value: 2.5e-06
  TIGR01661 272 ifvynlspdtdeavl.....qlfgpfGavqsvkiirdlttnkckGygfvsmtnydeaalailslnGytlgnrvlqvsfktnk 348
                ++v nl  +  + +l       f++fG + +v  ++++   + +G +fv   +   a+ a++ + G+ + ++ +++s+  +k
  MMETSP1137-20121227|820_1  10 VYVNNLNEKVSKDALkkslyAAFSQFGPILDVVAVKNF---RMRGQAFVVFRDISSATAAVKQMQGFPFYDKPMRLSYAKTK 88 
                56666655443333312112679***************...99*****************************9999986555 PP

  == domain 2    score: 14.7 bits;  conditional E-value: 7.1e-06
  TIGR01661 208 lhkaaakfrlsaldflavlakrlqqhavaqqaaaqrasplaadgavaglaagaqiaasdgagycifvynlspdtdeavl.qlfgpfGavqsvkiirdlttnkckGygfvsmtnydeaalailslnGytlg 336
                ++++a++ + +a+ +    +      +v +++aa +    ++ + +  + + + +         +fv nl  + +e +l  lf +f   ++v+++         G +fv   n  ++ +a++ l  ++++
  MMETSP1137-20121227|820_1 109 AKRKAEREEKKAGANKPKAVPAAAAAPVEEEDAAPEEEAETTPAETPKVPSTPAVVLP---NAILFVENLPDQVNEMMLsMLFQQFPGFKEVRLVPGK-----SGIAFVEFENEMQSGVAMAGLQNFKIT 230
                3444555555555555555566666777777777777777777777777666666553...459***************889************9888.....7******************99988876 PP

>> TIGR01648  hnRNP-R-Q: hnRNP-R, Q splicing factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   1.3   7.7e-07    0.0004     235     331 ..       9     116 ..       2     157 .. 0.72
   2 !   12.9   0.0   1.5e-05    0.0077     221     294 ..     155     229 ..     147     242 .] 0.78

  Alignments for each domain:
  == domain 1    score: 17.1 bits;  conditional E-value: 7.7e-07
  TIGR01648 235 ilyvrnlmletteeiieks....fsefkpG.avervk..kirdyafvhfedredavkamdelnGkeleGseievtlakPvdkes...yvrytkaakgrg.keaqaaaq 331
                 +yv nl  +++ + ++ks    fs+f p   v  vk  ++r  afv f d   a  a++++ G  +  +++ +  ak     s      y++  k ++  +++a+++
  MMETSP1137-20121227|820_1   9 TVYVNNLNEKVSKDALKKSlyaaFSQFGPIlDVVAVKnfRMRGQAFVVFRDISSATAAVKQMQGFPFYDKPMRLSYAKTKSDASsklDGTYQEKHKAERaAKRKAERE 116
                57****************87666999988525777883346789*********************************9764332111234655554433134445444 PP

  == domain 2    score: 12.9 bits;  conditional E-value: 1.5e-05
  TIGR01648 221 PevevdedvmakvkilyvrnlmletteeiieksfsefkpGave..rvkkirdyafvhfedredavkamdelnGkel 294
                P+v   + v+    il+v nl  ++ e ++   f++f pG  e   v      afv fe+  ++  am  l   ++
  MMETSP1137-20121227|820_1 155 PKVPSTPAVVLPNAILFVENLPDQVNEMMLSMLFQQF-PGFKEvrLVPGKSGIAFVEFENEMQSGVAMAGLQNFKI 229
                56666677777778***********************.997552156677889********999999998865444 PP

>> TIGR01659  sex-lethal: sex-lethal family splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0     3e-06    0.0016     113     186 ..      17      87 ..       4      98 .. 0.88
   2 !    7.9   0.0   0.00086      0.44     109     185 ..     169     241 ..     163     242 .] 0.79

  Alignments for each domain:
  == domain 1    score: 16.0 bits;  conditional E-value: 3e-06
  TIGR01659 113 nylpqdmtdrelyalfrtigpintcrimrdyktgysfgyafvdfaseadsqraikslngitvrnkrlkvsyarp 186
                + + +d   + lya f   gpi     +++++     g afv f     +  a+k+++g    +k +++sya+ 
  MMETSP1137-20121227|820_1  17 EKVSKDALKKSLYAAFSQFGPILDVVAVKNFRM---RGQAFVVFRDISSATAAVKQMQGFPFYDKPMRLSYAKT 87 
                4567888999**************999999986...699*********************************86 PP

  == domain 2    score: 7.9 bits;  conditional E-value: 0.00086
  TIGR01659 109 nlivnylpqdmtdrelyalfrtigpintcrimrdyktgysfgyafvdfaseadsqraikslngitvrn.krlkvsyar 185
                 l v+ lp+++++  l  lf+        r++     g   g afv+f  e++s  a+  l+   +     +k+sya+
  MMETSP1137-20121227|820_1 169 ILFVENLPDQVNEMMLSMLFQQFPGFKEVRLVP----GK-SGIAFVEFENEMQSGVAMAGLQNFKITPtNLMKISYAK 241
                577888888888888888888888888888764....33.389******************987766414679***96 PP

>> TIGR02102  pullulan_Gpos: pullulanase, extracellular
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0      0.19        97     421     462 ..      23      60 ..      13      77 .. 0.70
   2 ?    2.5   4.9    0.0098         5    1003    1084 ..      81     162 ..      64     175 .. 0.84

  Alignments for each domain:
  == domain 1    score: -1.8 bits;  conditional E-value: 0.19
  TIGR02102 421 kvakaaivdpsklGpqeldfakienfkkredaiiyeahvrdf 462
                   k+ +   s++Gp  ld   ++nf+ r  a +     rd 
  MMETSP1137-20121227|820_1  23 ALKKSLYAAFSQFGP-ILDVVAVKNFRMRGQAFVV---FRDI 60 
                344556667799999.8999999999999988653...3444 PP

  == domain 2    score: 2.5 bits;  conditional E-value: 0.0098
  TIGR02102 1003 kvgekeasektapkkeeeseadkekkedkdeskdkdkvaeaenkesktpagskkeneeveksskekkeekldkeaklpktae 1084
                 +++  ++++++++k +   ++++++++  + + ++++++  +nk    pa++ +  ee + +++e+ e ++++  k+p t  
  MMETSP1137-20121227|820_1   81 RLSYAKTKSDASSKLDGTYQEKHKAERAAKRKAEREEKKAGANKPKAVPAAAAAPVEEEDAAPEEEAETTPAETPKVPSTPA 162 
                 55666667777788888888888888889999999999999999999999999999999*******************9965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (242 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       168  (0.0409556); expected 82.0 (0.02)
Passed bias filter:                      117  (0.0285227); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         8  (0.00195027); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.43u 0.17s 00:00:00.60 Elapsed: 00:00:00.71
# Mc/sec: 449.88
//
Query:       MMETSP1137-20121227|821_1  [L=86]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (86 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        53  (0.0129205); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.17s 00:00:00.28 Elapsed: 00:00:00.48
# Mc/sec: 236.48
//
Query:       MMETSP1137-20121227|822_1  [L=65]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (65 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        35  (0.00853242); expected 82.0 (0.02)
Passed bias filter:                       34  (0.00828864); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.15s 00:00:00.27 Elapsed: 00:00:00.36
# Mc/sec: 238.31
//
Query:       MMETSP1137-20121227|823_1  [L=185]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (185 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       139  (0.0338859); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.13s 00:00:00.31 Elapsed: 00:00:00.31
# Mc/sec: 787.68
//
Query:       MMETSP1137-20121227|824_1  [L=316]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (316 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       389  (0.0948318); expected 82.0 (0.02)
Passed bias filter:                      136  (0.0331546); expected 82.0 (0.02)
Passed Vit filter:                        20  (0.00487567); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.16s 00:00:00.48 Elapsed: 00:00:00.46
# Mc/sec: 906.71
//
Query:       MMETSP1137-20121227|825_1  [L=289]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (289 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       116  (0.0282789); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.11s 00:00:00.34 Elapsed: 00:00:01.23
# Mc/sec: 310.12
//
Query:       MMETSP1137-20121227|826_1  [L=379]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.2e-13   49.2   6.5    1.2e-13   49.2   4.5    2.2  3  TIGR00880 2_A_01_02: multidrug resistance protein
      5e-05   20.3   2.4    9.5e-05   19.4   1.7    1.4  1  TIGR00881 2A0104: phosphoglycerate transporter family protein
    0.00014   18.8   4.1    0.00028   17.8   2.8    1.6  1  TIGR00890 2A0111: oxalate/formate antiporter
    0.00017   18.3   0.4    0.00017   18.3   0.3    1.9  2  TIGR00898 2A0119: cation transport protein
    0.00088   16.3   2.7     0.0013   15.7   1.9    1.3  1  TIGR00902 2A0127: MFS transporter, phenyl propionate permease (PPP) family
     0.0025   14.4   2.5      0.047   10.2   1.7    2.2  1  TIGR00892 2A0113: monocarboxylate transporter
  ------ inclusion threshold ------
      0.033   11.6   1.2      0.047   11.1   0.9    1.1  1  TIGR03593 yidC_nterm: membrane protein insertase, YidC/Oxa1 family, N-terminal domain
        0.9    6.5  12.0        1.3    6.0   8.3    1.1  1  TIGR00601 rad23: UV excision repair protein Rad23


Domain annotation for each model (and alignments):
>> TIGR00880  2_A_01_02: multidrug resistance protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.2       1.8   9.2e+02      83      92 ..      82      91 ..      64     105 .. 0.43
   2 !   49.2   4.5   2.4e-16   1.2e-13       2     129 ..     119     250 ..     118     259 .. 0.86
   3 ?   -2.6   0.1       2.3   1.2e+03      36      41 ..     363     368 ..     333     376 .. 0.55

  Alignments for each domain:
  == domain 1    score: -2.3 bits;  conditional E-value: 1.8
  TIGR00880 83 eersvalgll 92
               ++++ a +ll
  MMETSP1137-20121227|826_1 82 TTVAMAASLL 91
               2222222222 PP

  == domain 2    score: 49.2 bits;  conditional E-value: 2.4e-16
  TIGR00880   2 lllagyAlgqlvvsplsglltdrvGrkpvllvglfifvlsqllfalssnitvliiarilqGfgaaaalvagaaliadiikee.ersvalgllsagialgpilGpllGavla....qalgwralflilallall 129
                 +l ++ +  lv spl+g l+d+ Gr+  l+v+ +  ++s +++ +++++t+l ++ + q+++  a+  + +a+i d++k+  er++ lg ls+++ lg++ Gp+lG + +    qa    +lf ila+l ++
  MMETSP1137-20121227|826_1 119 NMLSVSSALKLVGSPLCGRLSDQQGRRLALFVSAIGSAISFAILGFTHSLTGLWLSLVPQSLFNHAF-NINKAVIVDFTKSSeERAAELGKLSMAAGLGMVAGPALGMAFIstheQAAAAAVLFSILAVLLAA 250
                578889999****************************************************996655.56679******9988************************99886766666666666666665444 PP

  == domain 3    score: -2.6 bits;  conditional E-value: 2.3
  TIGR00880  36 fifvls 41 
                + f+l+
  MMETSP1137-20121227|826_1 363 LGFFLF 368
                233444 PP

>> TIGR00881  2A0104: phosphoglycerate transporter family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   1.7   1.9e-07   9.5e-05      36     174 ..     121     259 ..     108     291 .. 0.80

  Alignments for each domain:
  == domain 1    score: 19.4 bits;  conditional E-value: 1.9e-07
  TIGR00881  36 lsafsiaYgiskfvvgvvsDrvsarvflaigLilvaivnlflgfssslwvliallalnGlfqglgwppcgrlltkwf.srserGtvvaiwnishnvggallpplvllaialllswhvvfivpgiiaiivslilllllrds 174
                ls  s++  ++  + g +sD+ + r  l++  i++ai   +lgf  sl+ l + l+ + lf+  ++ +++ +++ ++ s +er+  ++ ++++  +g    p l ++ i  + +  ++ ++ +i+a++++ +l ++++++
  MMETSP1137-20121227|826_1 121 LSVSSALKLVGSPLCGRLSDQQGRRLALFVSAIGSAISFAILGFTHSLTGLWLSLVPQSLFNH-AFNINKAVIVDFTkSSEERAAELGKLSMAAGLGMVAGPALGMAFISTHEQAAAAAVLFSILAVLLAALLPAIISPD 259
                556666666888899**********************************************85.678888888888835668***************9999987777777777777777777777777765555555443 PP

>> TIGR00890  2A0111: oxalate/formate antiporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   2.8   5.4e-07   0.00028       3      98 ..      77     175 ..      75     269 .. 0.81

  Alignments for each domain:
  == domain 1    score: 17.8 bits;  conditional E-value: 5.4e-07
  TIGR00890   3 wlvlvgtvimalvsgivYtwtllapalg...rklrvkvtavaiaftlllivlalsqvvgGkladkfGpravallggillgiGfifaaladslallylty 98 
                wl+   tv ma  ++   +  l ap+ +   ++l++++t +  ++ +++  + ++++  G+l d+ G r+   +++i ++i f + ++++sl+ l+l+ 
  MMETSP1137-20121227|826_1  77 WLLRPTTVAMAASLLTMVSHALVAPYTQarrDALGCGLTCNGNMLSVSSALKLVGSPLCGRLSDQQGRRLALFVSAIGSAISFAILGFTHSLTGLWLSL 175
                7777788888888888888888777765111678888999999999999999********************************************986 PP

>> TIGR00898  2A0119: cation transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.3   3.3e-07   0.00017     140     180 ..     129     169 ..     110     192 .. 0.86
   2 ?   -2.0   0.8      0.48   2.5e+02     446     491 ..     204     251 ..     202     255 .. 0.75

  Alignments for each domain:
  == domain 1    score: 18.3 bits;  conditional E-value: 3.3e-07
  TIGR00898 140 LlGslvlGqlsDrfGRkkvLllstlvtavsgvltafspnyt 180
                L+Gs ++G lsD+ GR+ +L++s +++a+s  +  f  ++t
  MMETSP1137-20121227|826_1 129 LVGSPLCGRLSDQQGRRLALFVSAIGSAISFAILGFTHSLT 169
                9****************************998888877665 PP

  == domain 2    score: -2.0 bits;  conditional E-value: 0.48
  TIGR00898 446 lgvgvcstmarvGsiisPf..lvyvlgevslflplvifgvlallagll 491
                  +g  s +a +G +  P   +++++++ ++   +v+f++la+l+++l
  MMETSP1137-20121227|826_1 204 AELGKLSMAAGLGMVAGPAlgMAFISTHEQAAAAAVLFSILAVLLAAL 251
                556777888888888888733567788888999999999999887754 PP

>> TIGR00902  2A0127: MFS transporter, phenyl propionate permease (PPP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   1.9   2.6e-06    0.0013     196     367 ..      72     247 ..      64     268 .. 0.73

  Alignments for each domain:
  == domain 1    score: 15.7 bits;  conditional E-value: 2.6e-06
  TIGR00902 196 vaflallknpqtlrvliavgllqGahaayyvysaiywtaiGisvsavsllwslGvlaevvlfalsrklfrrisirvlllisalagvvrwaviGai...edlpllillqllhsltyavchlaivryiaarqqseviklqal..ysalanGvliailtviaGllyqtlgagv.fvvmalv 367
                +a +a l  p t+  ++a  l   +ha    y+     a+G   +  + + s+    ++v   l  +l  +   r  l++sa+ +   +a++G++   + l+l ++ q l   ++ + +  iv +  +  + + + l  l   ++l + +  a+  ++     q ++a+v f ++a++
  MMETSP1137-20121227|826_1  72 AALMAWLLRPTTV-AMAASLLTMVSHALVAPYTQARRDALGCGLTCNGNMLSVSSALKLVGSPLCGRLSDQQGRRLALFVSAIGSAISFAILGFThslTGLWLSLVPQSLFNHAFNINKAVIVDFTKSS-EERAAELGKLsmAAGLGMVAGPALGMAFISTHEQAAAAAVlFSILAVL 247
                5566655557665.5778888899*********************************************************************98222457888999**********999999886554.334444444400445555555555444444444444333313333333 PP

>> TIGR00892  2A0113: monocarboxylate transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.2   1.7   9.2e-05     0.047      61     217 ..     122     289 ..     115     376 .. 0.72

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 9.2e-05
  TIGR00892  61 sillavlyagGPlssilvnkfGsrpvvliGgllaslGlilasfsssvlelyltiGvitGlGlalnlqpaltilGkyferrrplanglaaaGspvflsslaplnqlllekfGWrGsflilGgll..lhccvaGalmrPvaasqkkekskskeslredgk.........t 217
                s+  a+   g Pl+  l ++ G r  +++ ++ +++ + +  f++s++ l+l++   + +  a+n++ a+++  +     r+   g  ++ + +++ + + l+ +++ ++    +  +l ++l  l + +  a++ P ++s+ ++   +   ++++++         +
  MMETSP1137-20121227|826_1 122 SVSSALKLVGSPLCGRLSDQQGRRLALFVSAIGSAISFAILGFTHSLTGLWLSLVPQSLFNHAFNINKAVIVDFTKSSEERAAELGKLSMAAGLGMVAGPALGMAFISTHEQAAAAAVLFSILavLLAALLPAIISPDEPSSSSSSAAAAAPSTPSSSssaaaapssS 289
                56667778899*******************************************999999**********99888778888777777777788888888888888888888888777777775335677778999998888755555544444444443444444440 PP

>> TIGR03593  yidC_nterm: membrane protein insertase, YidC/Oxa1 family, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.9   9.2e-05     0.047       5      80 ..     239     315 ..     237     333 .. 0.71

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 9.2e-05
  TIGR03593   5 ilavaLsfvilllwqawqkdpkpepqkppaaaqqaesqsaa.aaaaasaaaaasadapsaaaaaaaaaaakritvkt 80 
                +l+ +L++++  l  a+ ++ +p +    aaa++ +++s++ +aaaa++++++sa ap+++++aa+ ++++  ++k+
  MMETSP1137-20121227|826_1 239 VLFSILAVLLAALLPAIISPDEPSSSSSSAAAAAPSTPSSSsSAAAAPSSSSSSAAAPASEVPAAPVENTDASKLKN 315
                78999999************999877777766666665555655666666666666666666666666556666666 PP

>> TIGR00601  rad23: UV excision repair protein Rad23
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   8.3    0.0025       1.3      85     146 ..     259     318 ..     244     342 .. 0.66

  Alignments for each domain:
  == domain 1    score: 6.0 bits;  conditional E-value: 0.0025
  TIGR00601  85 aePaatpesaptptpsatpasvaekksaaPasavee.essaeeeatatalesedtsaesegds 146
                 eP+++++sa++++p +tp+s + +++aaP+s+ +    +a+e ++a+++++ d+s+  +g+s
  MMETSP1137-20121227|826_1 259 DEPSSSSSSAAAAAP-STPSSSS-SAAAAPSSSSSSaAAPASEVPAAPVENT-DASKLKNGSS 318
                689999999999999.6665555.5556666655550555566666666555.4444444433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (379 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       191  (0.0465627); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                        19  (0.00463189); expected 4.1 (0.001)
Passed Fwd filter:                         8  (0.00195027); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.37u 0.16s 00:00:00.53 Elapsed: 00:00:00.47
# Mc/sec: 1064.34
//
Query:       MMETSP1137-20121227|827_1  [L=352]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (352 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        32  (0.00780107); expected 82.0 (0.02)
Passed bias filter:                       28  (0.00682594); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.17s 00:00:00.44 Elapsed: 00:00:00.42
# Mc/sec: 1106.19
//
Query:       MMETSP1137-20121227|828_1  [L=434]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.6e-11   40.4  11.8    9.2e-11   39.7   8.2    1.4  1  TIGR00803 nst: UDP-galactose transporter
    1.1e-05   23.0   4.2    2.1e-05   22.0   2.4    2.0  1  TIGR00817 tpt: Tpt phosphate/phosphoenolpyruvate translocator


Domain annotation for each model (and alignments):
>> TIGR00803  nst: UDP-galactose transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.7   8.2   4.5e-14   9.2e-11       3     222 .]      86     313 ..      84     313 .. 0.82

  Alignments for each domain:
  == domain 1    score: 39.7 bits;  conditional E-value: 4.5e-14
  TIGR00803   3 sVPiliilkqnnlvlvalgnllaagkqvT.qlkilstalmtlgslvaslgdkqwfslkllklgvaivqlvqssa.ktlseg..nlvvglsavlsallssglagvyfekilkdkdts...fyvrnlqlplfgllvt....fvvlllsdgslisnkgffigyttavwivvllnvvgglcvglvvkyadnttksivlalsiilslllsvrlfdaklsltfalgvilvflatllY 222
                + P+l++ + nnlv+v l   +  ++ v  ql i+ t l+  ++ +++l + qw ++ l+++g    ++ + s+   ++++   ++++l   l+ +l+s +agvy+e+ lk + +    ++ +  + ++ + +v+    f     +  ++ ++   +   t  + ++++  +  g+++g   k+ d+++ksi++a+  +  + ls   f+ +l+  ++  + lv+++++lY
  MMETSP1137-20121227|828_1  86 ALPALLYCVYNNLVYVNLEVFDPGTYNVLlQLRIVLTGLLYQLLFSKQLNRHQWRAIILISVGCVVKESAKLSHgTDVMQAdlRSWALL---LAQMLCSVFAGVYNEMLLKGTGSXavpVSTNLQNAYMYLNSVLwnglFLLQQGKLNEALAPQNLSTVFTPSILAIMAIMSSVGMVTGFFLKHLDSVLKSIASAIEVVATTALSWACFGTPLDAQTLAAASLVGFGIALY 313
                88*************************************************************99999999998877777646666665...6678***************9998764455544444555555555576444444444445555555666666666666666667899****************************************************9 PP

>> TIGR00817  tpt: Tpt phosphate/phosphoenolpyruvate translocator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.0   2.4     1e-08   2.1e-05     105     294 ..     122     316 ..     101     323 .. 0.73

  Alignments for each domain:
  == domain 1    score: 22.0 bits;  conditional E-value: 1e-08
  TIGR00817 105 svvlskfflgrefpltlylsLlpivlGvalasltelsfn...llgflsamisniefvarnifsK..kiltkksldklnlyalisililfllspiafiveglkll.treflqaiskvnvlklvtvslvaalgifHlyqqvafqllervspltysvgNvlKRvvvIvvSilffetkisflqvlGvilaiaGvflYskv 294
                + +l++++  ++++   + ++++i +G+      +ls     + + l + + +++++  ++f+   + +  k   +  + ++ + l   ++   +++ +gl ll ++++++a +  n+ +++t s++a+++i+    +v+   l+++ ++  s++  +  v+  + S+  f+t++  ++   + l  +G++lY + 
  MMETSP1137-20121227|828_1 122 TGLLYQLLFSKQLNRHQWRAIILISVGCVVKESAKLSHGtdvMQADLRSWALLLAQMLCSVFAGvyNEMLLKGTGSXAV-PVSTNLQNAYMYLNSVLWNGLFLLqQGKLNEALAPQNLSTVFTPSILAIMAIMSSVGMVTGFFLKHLDSVLKSIASAIEVVATTALSWACFGTPLDAQTLAAASLVGFGIALYART 316
                5567777777788889999999998888844444444330002333344444444444455543223344333333333.333334455555566666665555167899***********************************************************************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (434 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       117  (0.0285227); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.34u 0.17s 00:00:00.51 Elapsed: 00:00:00.44
# Mc/sec: 1301.89
//
Query:       MMETSP1137-20121227|829_1  [L=315]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-16   57.4   0.2      1e-11   41.3   0.1    2.0  2  TIGR02917 PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein
    5.3e-13   46.9   0.0    1.6e-10   38.8   0.1    2.1  2  TIGR02521 type_IV_pilW: type IV pilus biogenesis/stability protein PilW
      6e-09   32.5   0.5    7.9e-09   32.1   0.3    1.1  1  TIGR03939 PGA_TPR_OMP: poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA
    9.4e-09   32.9   0.1    8.9e-05   20.1   0.0    2.9  3  TIGR02552 LcrH_SycD: type III secretion low calcium response chaperone LcrH/SycD
    3.7e-05   22.2   0.0       0.43    9.0   0.0    3.3  4  TIGR02795 tol_pal_ybgF: tol-pal system protein YbgF
  ------ inclusion threshold ------
      0.051   11.5   0.9       0.12   10.3   0.2    1.9  2  TIGR02606 antidote_CC2985: putative addiction module antidote protein, CC2985 family


Domain annotation for each model (and alignments):
>> TIGR02917  PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.3   0.1   1.5e-14     1e-11     399     555 ..     103     258 ..      94     261 .. 0.90
   2 !   15.8   0.0   7.8e-07   0.00053     445     505 ..     250     312 ..     241     315 .] 0.87

  Alignments for each domain:
  == domain 1    score: 41.3 bits;  conditional E-value: 1.5e-14
  TIGR02917 399 aktklgiskLaqGdkseaiadLetAvkldpellraellLilsyLrsgefdkalaaakklekkqpdnaslynllgaiylgkkdlakAreafekALkiepdffpAlanLArldlqekniddAkqrfekvlaidpknlkallaLaelaarkgneeeaval 555
                ++ + +++ L +G+   a+a + + +kl+p  +r+   +   y r ++f+ a  ++++ +k  p+na l++ l+  +  +k + +Ar  ++ AL+++p+ ++A  +  r++++ ++ + A   f++ lai+p+  ++  aL  l+   g+ ++a a 
  MMETSP1137-20121227|829_1 103 VEYEHAVLLLKTGRYDGALALFGKLSKLNPGDGRVWQRMMAIYKRLRRFQSAERVIRAGLKACPGNAMLQQALADLLRERKRYTEARTHLRRALQLDPQLLSAYDSWGRMEAALGRHKLAESLFQRGLAIKPT-TRLYHALGVLQDTVGQADAARAT 258
                567889999*********************99999999999999***************************************************************************************98.47777888888777777776655 PP

  == domain 2    score: 15.8 bits;  conditional E-value: 7.8e-07
  TIGR02917 445 gefdkalaaakklek..kqpdnaslynllgaiylgkkdlakAreafekALkiepdffpAlanL 505
                g++d a+a++++ +    ++dn++l + lg + +  +++ kAre f +A   +p f  A  +L
  MMETSP1137-20121227|829_1 250 GQADAARATLRAGLDlpGEQDNPQLLHALGMVEVRAGNAHKARERFMAAIGANPSFTMAYLSL 312
                789999999999865338999*********************************999999888 PP

>> TIGR02521  type_IV_pilW: type IV pilus biogenesis/stability protein PilW
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.2   0.0     0.002       1.4      29      99 ..      99     169 ..      84     173 .. 0.84
   2 !   38.8   0.1   2.4e-13   1.6e-10      43     175 ..     181     312 ..     168     315 .] 0.93

  Alignments for each domain:
  == domain 1    score: 6.2 bits;  conditional E-value: 0.002
  TIGR02521  29 kaakirvqLaleYleqgdlekAkenlekAleldpkdadanlalAlyyqqlgelekAeesfrkAltlkpnng 99 
                +a ++  + a+  l+ g ++ A +   k  +l+p d ++++ +  +y++l++ + Ae+  r +l+  p n+
  MMETSP1137-20121227|829_1  99 EAFEVEYEHAVLLLKTGRYDGALALFGKLSKLNPGDGRVWQRMMAIYKRLRRFQSAERVIRAGLKACPGNA 169
                55677777888889999999999999999999*********9999*************9999999888876 PP

  == domain 2    score: 38.8 bits;  conditional E-value: 2.4e-13
  TIGR02521  43 eqgdlekAkenlekAleldpkdadanlalAlyyqqlgelekAeesfrkAltlkpnngdvlNNYGtFLcqqkkyeeAeqqfeaAiedpkYeqparsyeNaglcalkagdtekaekyltralkidpkrpesllel 175
                e++ +++A+  l  Al+ldp+  +a+++ + +   lg+++ Ae  f+++l++kp + +++   G+     ++++ A + ++a +  p  +   + +  +g++  +ag+++ka++ +  a+ ++p+   + l+l
  MMETSP1137-20121227|829_1 181 ERKRYTEARTHLRRALQLDPQLLSAYDSWGRMEAALGRHKLAESLFQRGLAIKPTT-RLYHALGVLQDTVGQADAARATLRAGLDLPGEQDNPQLLHALGMVEVRAGNAHKARERFMAAIGANPSFTMAYLSL 312
                678899************************************************75.677899**999999******************************************************99999887 PP

>> TIGR03939  PGA_TPR_OMP: poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.1   0.3   1.2e-11   7.9e-09      60     252 ..     108     298 ..      88     306 .. 0.93

  Alignments for each domain:
  == domain 1    score: 32.1 bits;  conditional E-value: 1.2e-11
  TIGR03939  60 lavlsWagedkevidvyery.slvglparelealAkAaRnekqwdkAlelyrkllqrdPknpdlllGlaltladagkdeeAlkalkelkerfpsdaerlealaYvlraaedsldalaaiqqalrlePdnkellkelveilt.rlgapalaarlakqhpelftdeekrrleldqaaelvrlgekasrsekerfala 252
                 ++l+  g+ + +++++ ++ +l++   r+++ +   + +++++++A+ + r  l+  P n+ l+ +la  l + +++ eA  +l+++ + +p+  + +  ++++ +a++++  a +  q+ l+ +P+++  l+  + +l+  +g++ +a + +++  +l  ++++ +l +      vr g++ +    erf  a
  MMETSP1137-20121227|829_1 108 AVLLLKTGRYDGALALFGKLsKLNPGDGRVWQRMMAIYKRLRRFQSAERVIRAGLKACPGNAMLQQALADLLRERKRYTEARTHLRRALQLDPQLLSAYDSWGRMEAALGRHKLAESLFQRGLAIKPTTR--LYHALGVLQdTVGQADAARATLRAGLDLPGEQDNPQLLHALGMVEVRAGNAHKAR--ERFMAA 298
                5788899999999999999999999999****************************************************************************************************98..7778888888999999999999999***********************9999885..588765 PP

>> TIGR02552  LcrH_SycD: type III secretion low calcium response chaperone LcrH/SycD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.0   1.3e-07   8.9e-05      13     116 ..      96     199 ..      90     201 .. 0.93
   2 !   10.3   0.0   0.00014     0.094      56     123 ..     173     240 ..     162     244 .. 0.88
   3 !   11.8   0.0   4.6e-05     0.032       5     113 ..     190     299 ..     187     305 .. 0.91

  Alignments for each domain:
  == domain 1    score: 20.1 bits;  conditional E-value: 1.3e-07
  TIGR02552  13 ldeeqleaiYalAYnlyqqgkyeeAeklFqlLaaldpteakywlgLaaclqalkeyeeAiaaYalaaaldlddprpvyhaaecllalgekeeAlkaLklaieia 116
                +d e+ e  Y++A  l ++g+y+ A+ lF  L  l+p + + w ++ a +++l +++ A     + +++ + ++    ++a+ l + +++ eA+  L++a++++
  MMETSP1137-20121227|829_1  96 IDLEAFEVEYEHAVLLLKTGRYDGALALFGKLSKLNPGDGRVWQRMMAIYKRLRRFQSAERVIRAGLKACPGNAMLQQALADLLRERKRYTEARTHLRRALQLD 199
                566788889*******************************************************************999******************9999875 PP

  == domain 2    score: 10.3 bits;  conditional E-value: 0.00014
  TIGR02552  56 lgLaaclqalkeyeeAiaaYalaaaldlddprpvyhaaecllalgekeeAlkaLklaieiaeekeeys 123
                 +La  l + k+y+eA+    +a++ld++  +++   +    alg+ + A++ +++ ++i+   + y+
  MMETSP1137-20121227|829_1 173 QALADLLRERKRYTEARTHLRRALQLDPQLLSAYDSWGRMEAALGRHKLAESLFQRGLAIKPTTRLYH 240
                5899999999********************************************99999887776665 PP

  == domain 3    score: 11.8 bits;  conditional E-value: 4.6e-05
  TIGR02552   5 atlksllgldeeqleaiYalAYnlyqqgkyeeAeklFqlLaaldpteakywlgLaaclqalkeyeeAiaaYalaaald..lddprpvyhaaecllalgekeeAlkaLklai 113
                + l+ +l+ld++ l a  + +  + + g+ + Ae lFq   a+ pt   y+ +L++     ++ + A+a+  + + l    d+p+ + +++ + +  g+  +A++ + +ai
  MMETSP1137-20121227|829_1 190 THLRRALQLDPQLLSAYDSWGRMEAALGRHKLAESLFQRGLAIKPTTRLYH-ALGVLQDTVGQADAARATLRAGLDLPgeQDNPQLLHALGMVEVRAGNAHKARERFMAAI 299
                568889999999999999999999999*******************99987.8***********************976699*************************9998 PP

>> TIGR02795  tol_pal_ybgF: tol-pal system protein YbgF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.0   0.0   0.00063      0.43       4      35 ..     103     134 ..     101     194 .. 0.89
   2 ?    3.5   0.0     0.033        23      16      79 ..     149     209 ..     135     231 .. 0.72
   3 ?    3.1   0.0     0.044        30      14      99 ..     181     259 ..     167     264 .. 0.54
   4 !    6.4   0.0    0.0041       2.8      45     102 ..     242     298 ..     217     311 .. 0.81

  Alignments for each domain:
  == domain 1    score: 9.0 bits;  conditional E-value: 0.00063
  TIGR02795   4 aeykaallvlkegdYakAeqaFkaFlkkYPks 35 
                 ey++a l+lk g+Y+ A + F +  k +P +
  MMETSP1137-20121227|829_1 103 VEYEHAVLLLKTGRYDGALALFGKLSKLNPGD 134
                5899******************9999988865 PP

  == domain 2    score: 3.5 bits;  conditional E-value: 0.033
  TIGR02795  16 gdYakAeqaFkaFlkkYPkstlapnAqYwlGealyakkkykdAakaflevvkkypksekapdal 79 
                +++++Ae+  +a lk  P +++  +A   l+ +l ++k y++A ++ + +++ +p+   a d++
  MMETSP1137-20121227|829_1 149 RRFQSAERVIRAGLKACPGNAMLQQA---LADLLRERKRYTEARTHLRRALQLDPQLLSAYDSW 209
                56777777777777777777777776...78888888888888888888888777766666654 PP

  == domain 3    score: 3.1 bits;  conditional E-value: 0.044
  TIGR02795  14 kegdYakAeqaFkaFlkkYPkstlapnAqYwlGealyakkkykdAakaflevvkkypksekapdallklgeslqelgqkekAkktl 99 
                ++++Y++A++ +++ l+  P+   a ++    G +  a +  k A+  f+  ++  p++         lg+++ + gq+++A++tl
  MMETSP1137-20121227|829_1 181 ERKRYTEARTHLRRALQLDPQLLSAYDS---WGRMEAALGRHKLAESLFQRGLAIKPTTR----LYHALGVLQDTVGQADAARATL 259
                3466777777766666666655554444...35555555555555555555555433332....2234666666666666666666 PP

  == domain 4    score: 6.4 bits;  conditional E-value: 0.0041
  TIGR02795  45 lGealyakkkykdAakaflevvkkypksekapdallklgeslqelgqkekAkktlqev 102
                lG ++ + ++ ++A ++ ++ +   p ++  p+ l  lg++ ++ g+++kA++ +   
  MMETSP1137-20121227|829_1 242 LGVLQDTVGQADAARATLRAGLD-LPGEQDNPQLLHALGMVEVRAGNAHKARERFMAA 298
                56666666777777777777766.999999*********************9988655 PP

>> TIGR02606  antidote_CC2985: putative addiction module antidote protein, CC2985 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.2   0.00018      0.12      22      61 ..     150     189 ..     150     199 .. 0.89
   2 ?   -3.0   0.0       2.5   1.7e+03      44      56 ..     252     264 ..     241     275 .. 0.58

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 0.00018
  TIGR02606  22 rYgsaSEVvRaaLRlleerEarleaLraaiqeGeqsgeag 61 
                r++sa  V+Ra+L++   + +  +aL +++ e ++  ea+
  MMETSP1137-20121227|829_1 150 RFQSAERVIRAGLKACPGNAMLQQALADLLRERKRYTEAR 189
                89**************999999*********999888776 PP

  == domain 2    score: -3.0 bits;  conditional E-value: 2.5
  TIGR02606  44 leaLraaiqeGeq 56 
                 +a ra + +G++
  MMETSP1137-20121227|829_1 252 ADAARATLRAGLD 264
                4555555555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (315 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       136  (0.0331546); expected 82.0 (0.02)
Passed bias filter:                      117  (0.0285227); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.37u 0.18s 00:00:00.55 Elapsed: 00:00:00.35
# Mc/sec: 1187.90
//
Query:       MMETSP1137-20121227|830_1  [L=136]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (136 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        60  (0.014627); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.13s 00:00:00.28 Elapsed: 00:00:00.28
# Mc/sec: 641.09
//
Query:       MMETSP1137-20121227|831_1  [L=93]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (93 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        33  (0.00804486); expected 82.0 (0.02)
Passed bias filter:                       33  (0.00804486); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.51
# Mc/sec: 240.69
//
Query:       MMETSP1137-20121227|832_1  [L=87]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (87 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        65  (0.0158459); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.15s 00:00:00.29 Elapsed: 00:00:00.27
# Mc/sec: 425.30
//
Query:       MMETSP1137-20121227|833_1  [L=106]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00099   17.3   1.5     0.0012   17.0   1.0    1.0  1  TIGR00360 ComEC_N-term: ComEC/Rec2-related protein
     0.0086   13.0   0.8       0.01   12.8   0.6    1.0  1  TIGR00883 2A0106: MFS transporter, metabolite:H+ symporter (MHS) family protein


Domain annotation for each model (and alignments):
>> TIGR00360  ComEC_N-term: ComEC/Rec2-related protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   1.0   5.8e-07    0.0012      10      89 ..      15      93 ..      11      99 .. 0.92

  Alignments for each domain:
  == domain 1    score: 17.0 bits;  conditional E-value: 5.8e-07
  TIGR00360 10 lhisllvgivqlfllkrgiheklalilglivlllYliLtGfapsalRaflalvlvlalklskrklnlisalllvaivllL 89
               +h+sl++g     l+ +g  +  + ilgl++l   ++L+G    + R+  a++ ++ + ++   + +  a++l+ iv +L
  MMETSP1137-20121227|833_1 15 MHLSLITGGTAFALVAIGQ-SPSNQILGLLLLVPSVFLAGWGAQTYRVRCASLELQRFDAITDTVGPLVAVILMTIVAAL 93
               6*******99999999977.778999******************************************999999998877 PP

>> TIGR00883  2A0106: MFS transporter, metabolite:H+ symporter (MHS) family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.8   0.6   4.9e-06      0.01     297     384 ..       5      92 ..       2     103 .. 0.91

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 4.9e-06
  TIGR00883 297 ltvlaallavpllsallesssillvlllllllalivamytgvmaallaelfptevRytgvslaynlasviggglapviaaaLvaltgd 384
                +++  +++ ++ ls+++  +++ lv++ +   + i++++  v   +la   ++ +R++ +sl  +   +i  +++p++a++L+++ + 
  MMETSP1137-20121227|833_1   5 FSAERTFVGWMHLSLITGGTAFALVAIGQSPSNQILGLLLLVPSVFLAGWGAQTYRVRCASLELQRFDAITDTVGPLVAVILMTIVAA 92 
                6666788999*******999***************************************************************99875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (106 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       124  (0.0302292); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.57
# Mc/sec: 241.22
//
Query:       MMETSP1137-20121227|834_1  [L=406]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (406 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       103  (0.0251097); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.13s 00:00:00.42 Elapsed: 00:00:00.85
# Mc/sec: 630.44
//
Query:       MMETSP1137-20121227|836_1  [L=103]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (103 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       124  (0.0302292); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.17s 00:00:00.32 Elapsed: 00:00:00.59
# Mc/sec: 230.42
//
Query:       MMETSP1137-20121227|837_1  [L=241]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (241 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        93  (0.0226719); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.11s 00:00:00.34 Elapsed: 00:00:00.32
# Mc/sec: 994.04
//
Query:       MMETSP1137-20121227|838_1  [L=199]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.8e-08   31.4   0.0    6.3e-08   30.7   0.0    1.3  1  TIGR01126 pdi_dom: protein disulfide-isomerase domain
    7.3e-08   30.2   0.0    9.6e-08   29.8   0.0    1.1  1  TIGR01130 ER_PDI_fam: protein disulfide isomerases
     0.0067   14.4   0.0      0.011   13.8   0.0    1.3  1  TIGR01068 thioredoxin: thioredoxin


Domain annotation for each model (and alignments):
>> TIGR01126  pdi_dom: protein disulfide-isomerase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.7   0.0   4.6e-11   6.3e-08      18     103 ..      95     189 ..      85     191 .. 0.84

  Alignments for each domain:
  == domain 1    score: 30.7 bits;  conditional E-value: 4.6e-11
  TIGR01126  18 lvefya.PWCGhCkklaPeyeklakelkke.eekvkiakvdataekelaskfkvs.......gfPtlkffkkgkkepvdyeGeReaeelvefvee 103
                l+ f+    C  C+++ P+  ++++ l+ + ++++ +a+v+++++ el+++f+vs       g+P l +f++g ++ ++++ eR+ + ++ + e 
  MMETSP1137-20121227|838_1  95 LISFTKkSDCXLCQDFFPVLGEVSRLLSLQmTDELRVAQVNCDEHLELCESFGVSgdepsaaGYPHLIWFRDGIEQEEKFDAERSVDGIIGWAEA 189
                666654146999************9988652578*******************9744444446**************************999876 PP

>> TIGR01130  ER_PDI_fam: protein disulfide isomerases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.8   0.0   7.1e-11   9.6e-08      33     107 ..     107     190 ..     104     194 .. 0.78

  Alignments for each domain:
  == domain 1    score: 29.8 bits;  conditional E-value: 7.1e-11
  TIGR01130  33 CksLaPeYekAAeelkkk.spkvklakvDateekelaqkygvs.......GyPtLkifrnge.sssdYnGpReaegivkylkkq 107
                C+ + P   +  + l+ + + ++ +a+v + e+ el++ +gvs       GyP L +fr+g  ++++++  R+ +gi+ + + +
  MMETSP1137-20121227|838_1 107 CQDFFPVLGEVSRLLSLQmTDELRVAQVNCDEHLELCESFGVSgdepsaaGYPHLIWFRDGIeQEEKFDAERSVDGIIGWAEAK 190
                555555555555555533144799******************844444446**********99999**************8765 PP

>> TIGR01068  thioredoxin: thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.0     8e-06     0.011      26      83 ..     104     172 ..      91     182 .. 0.78

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 8e-06
  TIGR01068  26 CgpCkmlaPvleelak....eleekvkvvKlnvdeeqeiaakygir.......siPtlllfkngkevkr 83 
                C  C+ + Pvl e+++    +++++++v+++n de+ e+ +++g++         P l+ f++g e+++
  MMETSP1137-20121227|838_1 104 CXLCQDFFPVLGEVSRllslQMTDELRVAQVNCDEHLELCESFGVSgdepsaaGYPHLIWFRDGIEQEE 172
                999*********9876444488999*******************9733332224788888888877665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (199 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        77  (0.0187713); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.21u 0.15s 00:00:00.36 Elapsed: 00:00:00.46
# Mc/sec: 571.00
//
Query:       MMETSP1137-20121227|839_1  [L=66]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (66 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        42  (0.0102389); expected 82.0 (0.02)
Passed bias filter:                       39  (0.00950756); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.15s 00:00:00.26 Elapsed: 00:00:00.28
# Mc/sec: 300.39
//
Query:       MMETSP1137-20121227|840_1  [L=615]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   3.4e-121  403.6   0.0   1.7e-100  335.3   0.0    2.9  2  TIGR01536 asn_synth_AEB: asparagine synthase (glutamine-hydrolyzing)
    8.2e-62  207.6   0.0    8.3e-35  118.4   0.0    3.1  3  TIGR03108 eps_aminotran_1: exosortase A system-associated amidotransferase 1
    1.4e-52  176.6   0.1    4.3e-24   82.5   0.0    3.1  3  TIGR03104 trio_amidotrans: asparagine synthase family amidotransferase
    8.2e-10   36.4   0.0      2e-09   35.2   0.0    1.6  1  TIGR01134 purF: amidophosphoribosyltransferase
    5.9e-06   22.9   0.0    9.7e-06   22.2   0.0    1.2  1  TIGR01135 glmS: glutamine-fructose-6-phosphate transaminase (isomerizing)


Domain annotation for each model (and alignments):
>> TIGR01536  asn_synth_AEB: asparagine synthase (glutamine-hydrolyzing)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  335.3   0.0  2.1e-103  1.7e-100       1     384 [.      48     417 ..      48     429 .. 0.94
   2 !   65.1   0.0   1.6e-21   1.3e-18     438     517 .]     419     509 ..     414     509 .. 0.84

  Alignments for each domain:
  == domain 1    score: 335.3 bits;  conditional E-value: 2.1e-103
  TIGR01536   1 CgiagivdlkakakeeeeaikemletlahRGPDaegvwkde..keenailghrRLaiidlsegaQPlsnekevvivfnGEIYNheeLreeleekGyeFetksDtEViLaayeewgeelverLeGmFAfalwdekkgelflaRDrlGikPLYyase.qgkllfaSEiKallalk..eikaeldkealaelltlqlvptektlfkevkelepakaldgeekleeywevekeevkeseeelveelrelledavkkrlvadvpvgvllSGGlDSslvaaiakkeak............sevktFsigfedskdldeskaarkvadelgtehkevliseeevlkeleevilale..eptairasiplyllsklarekgvkVvLsGeGaDElfgGYeyfreakaeeale 384
                Cg+++i ++k   +  + +   ++++++hRGPD++g++  +  + +   ++h+RLai+d  +g+QPl +++     +nGEIYNh+eLr +l+++   F+t+sD+EVi+++y+e+g ++ ++L+G+FAf+++dek+gel++aRD++Gi  +Y+++  +g+  f+SE+K l+a+   +++++++++++++  +  +    k+++  ++ +e+ak+     +le                    +r++++++v+krl+advp gvllSGGlDSslva+++++  +            +++k+Fsig+e+ +dl+   aa+kvad++gteh+ ++++ +e+++++ +vi++le  ++t+ira +p++ll+++++++g+k+v+sGeGaDE ++GY yf++a+++ +l+
  MMETSP1137-20121227|840_1  48 CGFLAIANSKLSPEALRLQTLTLQRLVRHRGPDGSGIHVIVgdDGSCSSVAHERLAIVDPLSGNQPLFSHDX---SVNGEIYNHKELRSKLKDQ-TPFRTESDCEVIVHLYDEVGVDTASKLDGDFAFVILDEKTGELYAARDPIGINSMYMGTGlDGSTWFSSEAKPLVAAGciDVEVFPPGHYYTSSAKKLV----KYYNPAWRSVEAAKEP---LDLE-------------------LVRKTFIKSVEKRLMADVPFGVLLSGGLDSSLVASVIARVRRerflqngivddlKPLKSFSIGLEGAPDLE---AAKKVADFIGTEHYGFTFTVQEGIDAVSDVIYHLEtyDVTTIRAGTPMFLLARKIKAMGIKMVMSGEGADETLAGYLYFHKAPNATELH 417
                99999999999888855677789**************9998734556689*********************4...69***************99.***********************************************************99****************999***********99988885....7999999999999986...4555...................49**********************************99999899***************************...************************************************************************************99998 PP

  == domain 2    score: 65.1 bits;  conditional E-value: 1.6e-21
  TIGR01536 438 ellrldlelllsdllrakDrvsmahslEvRvPflDkelvelalsippelklr........dgkeKvlLreaaee....llPeeileRkKeaf 517
                el+r+  +l+ +d+lra+ +++mah+lE+RvPflD++l+++++si+pe k+         +  eK+lLr+a+      +lP+e+l+R+Ke+f
  MMETSP1137-20121227|840_1 419 ELVRKIDALHSYDCLRAN-KATMAHGLEARVPFLDEDLLDVIMSIDPEFKMIkkgpkggdQYLEKWLLRKAFXVeeapYLPREVLWRQKEQF 509
                5566666788899*****.****************************98875333433334579*******9766789************99 PP

>> TIGR03108  eps_aminotran_1: exosortase A system-associated amidotransferase 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  118.4   0.0     1e-37   8.3e-35       1     173 [.      47     219 ..      47     227 .. 0.91
   2 !   51.3   0.0   1.9e-17   1.6e-14     216     377 ..     232     407 ..     218     424 .. 0.74
   3 !   34.5   0.0   2.4e-12     2e-09     499     588 ..     435     536 ..     430     543 .. 0.81

  Alignments for each domain:
  == domain 1    score: 118.4 bits;  conditional E-value: 1e-37
  TIGR03108   1 mcGiagifdlegkreidrellkrmnealahrGPdeegvhvepG.....iglghrrlsiidlaggkqPlanedgsvvvvfnGeiynfkelvkelealGhqfrtksdtevivhaWeeWGedcverlrGmfafalwdrkketlflardrlgvkPlyyalledGalifgselkallahpsle 173
                mcG  +i + + + e  r +  ++++ ++hrGPd+ g+hv  G      +++h rl+i+d  +g+qPl+++d sv    nGeiyn+kel+++l+     frt+sd evivh ++e G+d+ ++l G faf++ d+k  +l+ ard +g+  +y+++  dG+  f+se k l+a   ++
  MMETSP1137-20121227|840_1  47 MCGFLAIANSKLSPEALRLQTLTLQRLVRHRGPDGSGIHVIVGddgscSSVAHERLAIVDPLSGNQPLFSHDXSV----NGEIYNHKELRSKLKDQ-TPFRTESDCEVIVHLYDEVGVDTASKLDGDFAFVILDEKTGELYAARDPIGINSMYMGTGLDGSTWFSSEAKPLVAAGCID 219
                9******99988888888888889999************976533333579**********************98....9*************987.68************************************************************************9877666 PP

  == domain 2    score: 51.3 bits;  conditional E-value: 1.9e-17
  TIGR03108 216 akaeprqyWdvsfaaeaslseeeleeelierlkeavelrlvadvPlGaflsGGvdssavvallaklse............ePvktcsiafddaafdeaeyakkvaeryktehkvetve.addfdlvdrla...glydePfadssalPtyrvce.larkrvtvalsGdGgdelfaGyrry 377
                + ++ ++y++ ++ + ++++e    e + + + ++ve rl+advP+G +lsGG+dss v +++a+  +            +P+k+ si+++ a     e akkva+  +teh+  t + ++ +d v  ++   + yd      +  P + + + + +  +++++sG+G+de++aGy  +
  MMETSP1137-20121227|840_1 232 SAKKLVKYYNPAWRSVEAAKEPLDLELVRKTFIKSVEKRLMADVPFGVLLSGGLDSSLVASVIARVRRerflqngivddlKPLKSFSIGLEGAPD--LEAAKKVADFIGTEHYGFTFTvQEGIDAVSDVIyhlETYDVTTIR-AGTPMFLLARkIKAMGIKMVMSGEGADETLAGYLYF 407
                556788999999998888877777777788899****************************999875422222233333469********99865..5569***********977655144566665543111456655443.4579998876155668*****************654 PP

  == domain 3    score: 34.5 bits;  conditional E-value: 2.4e-12
  TIGR03108 499 vdrasmavglevrvPlldhrlvewaaklpsslklrga..eG......kyllkkal....epylpedvlyrkkmGfsvPla.eWlrGPlkervralvssevlae 588
                 ++a+ma+gle+rvP+ld  l++ + ++  ++k+ ++  +G      k+ll+ka+    +pylp +vl+r+k  fs  +  +W+ G lk+++ a+v++  +a+
  MMETSP1137-20121227|840_1 435 ANKATMAHGLEARVPFLDEDLLDVIMSIDPEFKMIKKgpKGgdqyleKWLLRKAFxveeAPYLPREVLWRQKEQFSDGVGyNWIDG-LKAHANAVVTDADMAT 536
                5789*****************************9654223345555589999986444358***************9986368877.8888888888887766 PP

>> TIGR03104  trio_amidotrans: asparagine synthase family amidotransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.5   0.0   5.3e-27   4.3e-24      22     175 ..      69     222 ..      46     237 .. 0.82
   2 !   64.5   0.0   1.5e-21   1.2e-18     243     386 ..     257     410 ..     230     431 .. 0.79
   3 !   26.2   0.0   5.9e-10   4.9e-07     459     497 ..     434     472 ..     423     510 .. 0.86

  Alignments for each domain:
  == domain 1    score: 82.5 bits;  conditional E-value: 5.3e-27
  TIGR03104  22 rmaaelakrGPdaeGvfa....qgk.valGhrrlkiidlseasqqPmvdaelglalvfnGaiynykelreelealGyrffsegdtevilkayhawGeelvsrleGmfafaiwerdsgrlllardrlGikPlylae.dekrlrfasslpallaaggvdtki 175
                +++  +++rGPd +G+++    +g+  ++ h rl+i+d   +++qP++ ++       nG iyn+kelr+ l+++   f +e+d evi++ y + G +  s+l G faf+i ++++g+l  ard +Gi  +y+ +  +++  f+s+ + l+aag +d ++
  MMETSP1137-20121227|840_1  69 TLQRLVRHRGPDGSGIHVivgdDGScSSVAHERLAIVDP-LSGNQPLFSHDX----SVNGEIYNHKELRSKLKDQT-PFRTESDCEVIVHLYDEVGVDTASKLDGDFAFVILDEKTGELYAARDPIGINSMYMGTgLDGSTWFSSEAKPLVAAGCIDVEV 222
                23455789********97433334425799********5.4689****9998....56**************9985.8******************************************************9762578999**************9887 PP

  == domain 2    score: 64.5 bits;  conditional E-value: 1.5e-21
  TIGR03104 243 davlealrlavkrrlvadvpvGvllsGGldssllvallaeag.........ved...lktfsvGfedvggekgdefeysdliaerfetrhhkllipeeevlealpeavaamsePmvsh..davafyllseev.skevkvvqsGqGadevfaGyhwyPkl 386
                + v++++ ++v++rl+advp GvllsGGldssl+ +++a++          v+d   lk+fs+G+e +++ +      +  +a+   t+h  ++ + +e ++a+++ + ++    v+       ++ll++++ +  +k+v+sG Gade +aGy ++ k 
  MMETSP1137-20121227|840_1 257 ELVRKTFIKSVEKRLMADVPFGVLLSGGLDSSLVASVIARVRrerflqngiVDDlkpLKSFSIGLEGAPDLE-----AAKKVADFIGTEHYGFTFTVQEGIDAVSDVIYHLETYDVTTirAGTPMFLLARKIkAMGIKMVMSGEGADETLAGYLYFHKA 410
                56889999****************************999875112221112233333689999999988755.....567899999***********************99888776511566799***99935679*****************99887 PP

  == domain 3    score: 26.2 bits;  conditional E-value: 5.9e-10
  TIGR03104 459 rvdnmtmawGlearvPfldhelvelaariPaelklkdeG 497
                r +  tma GlearvPfld +l ++ ++i +e+k+ ++G
  MMETSP1137-20121227|840_1 434 RANKATMAHGLEARVPFLDEDLLDVIMSIDPEFKMIKKG 472
                77889*****************************98776 PP

>> TIGR01134  purF: amidophosphoribosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.2   0.0   2.4e-12     2e-09      85     218 ..     106     232 ..      48     246 .. 0.80

  Alignments for each domain:
  == domain 1    score: 35.2 bits;  conditional E-value: 2.4e-12
  TIGR01134  85 qPlvvssavgglalaHNGnlvnaeelreeleeegrkfntssDsevllallaeeeeskeelekavaevlervkGaYalvlmsee..klvavrDPvGvrPLvlgrkedg.yvvaSEsvAld.lgaelvrdvepgevvvlk 218
                 Pl  +++  +   + NG++ n +elr++l+++ + f+t+sD ev+++l  e        ++    + +++ G +a+v+++e+  +l+a+rDP G+  + +g+  dg + ++SE   l  +g   v+   pg  ++ +
  MMETSP1137-20121227|840_1 106 DPLSGNQPLFSHDXSVNGEIYNHKELRSKLKDQ-TPFRTESDCEVIVHLYDE---V---GVD----TASKLDGDFAFVILDEKtgELYAARDPIGINSMYMGTGLDGsTWFSSEAKPLVaAGCIDVEVFPPGHYYTSS 232
                5666666655566788****************5.6*************9974...2...122....335688*****9998763369***************877776899***987764444434444566665544 PP

>> TIGR01135  glmS: glutamine-fructose-6-phosphate transaminase (isomerizing)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.2   0.0   1.2e-08   9.7e-06      99     200 ..     122     215 ..     112     262 .. 0.76

  Alignments for each domain:
  == domain 1    score: 22.2 bits;  conditional E-value: 1.2e-08
  TIGR01135  99 NGiieNykelreelekkgvefkSdTDtEviahlieeelkeeedlleavqkalkklrGayalavldkdepeklvaarke...sPLivglg.egenfvaSdvtallev 200
                NG i N+kelr++l+     f+ + D Evi+hl +e              + +kl+G +a+++ld+++ e l+aar       + +g+g +g + ++S++++l+++
  MMETSP1137-20121227|840_1 122 NGEIYNHKELRSKLKD-QTPFRTESDCEVIVHLYDEVGV----------DTASKLDGDFAFVILDEKTGE-LYAARDPigiNSMYMGTGlDGSTWFSSEAKPLVAA 215
                9*************77.789*************876544..........46789******9999988766.*****852223466777745678888888888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (615 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       106  (0.0258411); expected 82.0 (0.02)
Passed bias filter:                      100  (0.0243784); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.60u 0.15s 00:00:00.75 Elapsed: 00:00:00.72
# Mc/sec: 1127.41
//
Query:       MMETSP1137-20121227|841_1  [L=123]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (123 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        50  (0.0121892); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.14s 00:00:00.30 Elapsed: 00:00:00.25
# Mc/sec: 649.39
//
Query:       MMETSP1137-20121227|842_1  [L=376]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (376 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        88  (0.0214529); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.14s 00:00:00.41 Elapsed: 00:00:00.40
# Mc/sec: 1240.70
//
Query:       MMETSP1137-20121227|844_1  [L=582]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (582 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        83  (0.020234); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.15s 00:00:00.52 Elapsed: 00:00:00.62
# Mc/sec: 1238.99
//
Query:       MMETSP1137-20121227|845_1  [L=409]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (409 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        77  (0.0187713); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.16s 00:00:00.46 Elapsed: 00:00:00.50
# Mc/sec: 1079.67
//
Query:       MMETSP1137-20121227|846_1  [L=367]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.6e-30  102.7   0.0    2.8e-17   60.8   0.0    2.2  2  TIGR00093 TIGR00093: pseudouridine synthase
    0.00032   17.9   0.1     0.0041   14.3   0.0    2.1  2  TIGR00005 rluA_subfam: pseudouridine synthase, RluA family


Domain annotation for each model (and alignments):
>> TIGR00093  TIGR00093: pseudouridine synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.8   0.0   1.3e-20   2.8e-17       1      88 [.     108     197 ..     108     209 .. 0.90
   2 !   39.8   0.0     4e-14   8.2e-11      97     157 ..     303     363 ..     282     365 .. 0.83

  Alignments for each domain:
  == domain 1    score: 60.8 bits;  conditional E-value: 1.3e-20
  TIGR00093   1 nKPkgvlsskdDpekrkvvkdllek.lrgkklaavGRLDrdseGlllltddgelqhrlthpekevektYlvqvegsvtdedl.ealrkGv 88 
                nKP gvl++ +D+++r  ++d  e  l  k+l+++GRLD  s+Glll t+dg l+  l++pe++v ++Y   v+g v   +l + l++Gv
  MMETSP1137-20121227|846_1 108 NKPCGVLTTLADEHGRPDLHDAIETxLMRKGLHPIGRLDCHSTGLLLWTTDGRLTRCLLDPEQQVPREYECVVKGRVLFPELqRMLASGV 197
                8***********************9779***********************************************986544404456665 PP

  == domain 2    score: 39.8 bits;  conditional E-value: 4e-14
  TIGR00093  97 paklklikepelktklrvtlteGrnrqvrRltaavglevlrLvRvrigdvslegLeeGewr 157
                + + + i+  +    +rv++ eG+nr vrR++a+ g +v++L+Rv++gd  l  L++Ge r
  MMETSP1137-20121227|846_1 303 KXEREKIAAXSHLSIVRVVVREGKNRMVRRMLAHCGHPVINLRRVAFGDAVLGHLKRGEAR 363
                4555556555555589******************************************987 PP

>> TIGR00005  rluA_subfam: pseudouridine synthase, RluA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.0     2e-06    0.0041      82     166 ..     104     183 ..     102     193 .. 0.89
   2 ?    0.8   0.2     0.026        53     205     239 ..     309     343 ..     304     348 .. 0.92

  Alignments for each domain:
  == domain 1    score: 14.3 bits;  conditional E-value: 2e-06
  TIGR00005  82 ilvidKPsglvvhptggyekntvlnallahlkeelvsrleivhRLDrdTSGllvvaktekaleeLkeqlkektvkkeYvalvkge 166
                ++v++KP g+ +  + ++    + +a++  l ++    l+++ RLD   +Gll+     +  + L +   e++v +eY+ +vkg+
  MMETSP1137-20121227|846_1 104 LVVMNKPCGVLTTLADEHGRPDLHDAIETXLMRK---GLHPIGRLDCHSTGLLLWTTDGRLTRCLLD--PEQQVPREYECVVKGR 183
                799****************************955...8****************9988777777766..4789999999999996 PP

  == domain 2    score: 0.8 bits;  conditional E-value: 0.026
  TIGR00005 205 lerdekaslvelkllTGRtHQiRVHlqylghplag 239
                +++  + s+v++ ++ G    +R  l++ ghp+++
  MMETSP1137-20121227|846_1 309 IAAXSHLSIVRVVVREGKNRMVRRMLAHCGHPVIN 343
                6778899*************************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (367 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        63  (0.0153584); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.27u 0.13s 00:00:00.40 Elapsed: 00:00:00.35
# Mc/sec: 1384.00
//
Query:       MMETSP1137-20121227|847_1  [L=235]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (235 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       207  (0.0504632); expected 82.0 (0.02)
Passed bias filter:                      112  (0.0273038); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.16s 00:00:00.38 Elapsed: 00:00:00.32
# Mc/sec: 969.29
//
Query:       MMETSP1137-20121227|848_1  [L=266]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (266 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       197  (0.0480254); expected 82.0 (0.02)
Passed bias filter:                      129  (0.0314481); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.18s 00:00:00.41 Elapsed: 00:00:00.50
# Mc/sec: 702.18
//
Query:       MMETSP1137-20121227|849_1  [L=764]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.1e-19   66.7   0.0    2.9e-19   66.3   0.0    1.1  1  TIGR03903 TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
    5.9e-07   27.0   0.0    9.4e-07   26.3   0.0    1.2  1  TIGR03724 arch_bud32: Kae1-associated kinase Bud32


Domain annotation for each model (and alignments):
>> TIGR03903  TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.3   0.0   1.4e-22   2.9e-19      11     240 ..     172     400 ..     165     408 .. 0.86

  Alignments for each domain:
  == domain 1    score: 66.3 bits;  conditional E-value: 1.4e-22
  TIGR03903  11 lRedaaeeerlvaRFrReialCarLshPnivaLlDsGeaedgllFavFeyveGrtlrevLaad.GaLpaaetgrLmlqvLDalaaahdaGvvhRDLkPqnimvsaadveshakvLDFGigaLlpgvedadeatltrttevlGsPaYaaPeqLRge...pvtaksDlYaWGLivleCLtGkrvvqGa..svaevlykqLsPvdvslPsaiaghpLg.evLRkalnkdvrqRaasaeal 240
                l++  ae+e+     r e a+   L hPniv++ +s eae + +  v e+  G  l e L         a  ++L  ++L a+   h++G vhRD+k +nim  ++    + k++DFG +  +    +         +   G+ +Y aPe L      p  +  Dl++ G+ +   L G++  + +   v+++l ++ +P   s P +    pL+ + +R  ++k++  R  +++al
  MMETSP1137-20121227|849_1 172 LKTVFAEDEQMLEEMRQECAIQRSLDHPNIVRVYESFEAEGDAVHIVMELCSGGNLVEKLRESpRGFEEAAAAELAKKILSAIYYMHQRGFVHRDIKLDNIMYENRLPGAEPKLIDFGFACKVKKGAE-------SIHGRYGTLSYMAPELLDTKergPYESSVDLWSIGVTLYTLLSGRKPFDHEdrEVKKILIREATPS-YSGPRWARLSPLAvDFVRCLMHKEPSLRLSASQAL 400
                45556789**************************************************9987623467777899********************************************9875544333.......457778**********9764233666788****************9886542279*********96.799*********86899********9998888877 PP

>> TIGR03724  arch_bud32: Kae1-associated kinase Bud32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.3   0.0   4.6e-10   9.4e-07      59     139 ..     202     294 ..     179     302 .. 0.81

  Alignments for each domain:
  == domain 1    score: 26.3 bits;  conditional E-value: 4.6e-10
  TIGR03724  59 vntPvvydvdpeekkivmeyiegkklkdlleekel........ellkevGelvgklHkagivhgDlttsNiivk....ddklyliDfGLgkks 139
                v++   ++ + ++ +ivme  +g +l + l+e+          el+k++  ++  +H+ g+vh D+   Ni+++    + +  liDfG + k 
  MMETSP1137-20121227|849_1 202 VRVYESFEAEGDAVHIVMELCSGGNLVEKLRESPRgfeeaaaaELAKKILSAIYYMHQRGFVHRDIKLDNIMYEnrlpGAEPKLIDFGFACKV 294
                455556677788999***************99877899999999*****************************7566678999*****98664 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (764 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        72  (0.0175524); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.16s 00:00:00.65 Elapsed: 00:00:00.68
# Mc/sec: 1482.94
//
Query:       MMETSP1137-20121227|851_1  [L=1038]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.8e-59  199.3   0.0    2.7e-59  198.7   0.0    1.1  1  TIGR01982 UbiB: 2-polyprenylphenol 6-hydroxylase


Domain annotation for each model (and alignments):
>> TIGR01982  UbiB: 2-polyprenylphenol 6-hydroxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  198.7   0.0   6.5e-63   2.7e-59      47     349 ..     615     919 ..     582     931 .. 0.92

  Alignments for each domain:
  == domain 1    score: 198.7 bits;  conditional E-value: 6.5e-63
  TIGR01982  47 slgerlrlaleelGPifiKlGQvlstRaDllpeeiaeeLslLqdkvppfdlkaarkvieaelgk.pveelFaefeekPlAaASiaQvhkAvlvegkeVavKvlRPgiekkieadikllellaklvekllpeakrlrptevvkefektlkeEldlrlEaanaselkenfkndk.klivPevyweltservltlewidgipvsdleklkeaGldlkalaenlvesflkqvlrdgfFHaDlHpGNilvakdgki....ialDfGivgrlseeerrylaeillgflerdykrvaevhleagyvpsdtdlaele 349
                +++  lr  + +lG  ++K+GQ l++R+D+ pe +++eLs+L d+ p  + +++ +++ +elg+  ++ + + ++e+Pl+ ASiaQvh+A+l++g++V++Kv+  ++++ +++d+   e la+++  l p+++   ++ ++ke ++  ++Eld+++Eaan + +  n+k ++ + + Pev+ +lt++r l++ + +g++++d ekl++a +dlk l  ++ e   +q++ +g F  D+HpGNilv+  ++i    ++lDfG+  rl++eer  + ++llg+ e d +++   +l++g+ + ++d + +e
  MMETSP1137-20121227|851_1 615 RAARILRVRMVALGGLWVKIGQYLASRSDVTPEPLVNELSHLMDANPHRPISEIAATLVEELGEaDLKRSLRAIDETPLSVASIAQVHTAWLLDGSKVVLKVMHRDVDTLMRQDLIHSEILASILAYLEPDFD---FRPLIKEANSEHAKELDFTTEAANLTDVSSNLKTSAvNAVLPEVIPSLTTRRCLVMRFEEGTSLKDAEKLRSANIDLKLLLFRICEAWAAQMFVHGTFNCDPHPGNILVRDLPEIgpvpVLLDFGLTKRLTNEERLGFCQLLLGMSEMDGDMLHAGLLRLGF-KFNVDFEPFE 919
                34555788899*****************************************************999999***********************************************************9987...8889****************************988637888*********************************************************************99666444489****************************9999888888886.4556666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1038 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       102  (0.0248659); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.61u 0.17s 00:00:00.78 Elapsed: 00:00:00.78
# Mc/sec: 1756.47
//
Query:       MMETSP1137-20121227|852_1  [L=1489]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        2.4    5.0  30.9        4.6    4.1  21.5    1.5  1  TIGR01628 PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family


Domain annotation for each model (and alignments):
>> TIGR01628  PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1  21.5    0.0011       4.6     386     532 ..    1129    1259 ..    1000    1289 .. 0.55

  Alignments for each domain:
  == domain 1    score: 4.1 bits;  conditional E-value: 0.0011
  TIGR01628  386 sigspvigaanisgrhqaaqqqavvtqavkqqlasqplnfkinqmmlstqnpskpeapnalaqlaqqrlqaqgrrnlnnr.nrnvlgnmnkkqqnaaskanqanvkaqpq..aqsknqmqqvvqdnn.lpqkqatksnnkestltaaalas 532 
                 s+++p+ ++    +   a   ++ +  a+++ l++ +  +                  + +  ++ ++ +++++ ++++  ++++++++++++q++ + +nq+++++q+q   q+++q qq +q+++  +q+q++++++++ +++ +++++
  MMETSP1137-20121227|852_1 1129 SQPMPMPAMP---AGAGARAMPHQHLPANTANLDQAKSAWT-----------------QQVPSQGGVQVRQGSHLQAQQHcQQQMQHAQPQQFQQQQQLKNQQHLQQQQQqqRQQRQQQQQQQQQQQqQQQQQQQQQQQRQLHRAHQQRHA 1259
                 2222222211...1111111111222222222222222222.................111111111122222223333324444444444444444444443333333321111111111111111011111122222222222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1489 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       796  (0.194052); expected 82.0 (0.02)
Passed bias filter:                      263  (0.0641151); expected 82.0 (0.02)
Passed Vit filter:                       114  (0.0277913); expected 4.1 (0.001)
Passed Fwd filter:                        26  (0.00633837); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 2.25u 0.25s 00:00:02.50 Elapsed: 00:00:01.59
# Mc/sec: 1236.05
//
Query:       MMETSP1137-20121227|853_1  [L=373]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (373 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        97  (0.023647); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.15s 00:00:00.43 Elapsed: 00:00:00.64
# Mc/sec: 769.25
//
Query:       MMETSP1137-20121227|854_1  [L=537]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (537 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        63  (0.0153584); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.14s 00:00:00.48 Elapsed: 00:00:00.42
# Mc/sec: 1687.57
//
Query:       MMETSP1137-20121227|855_1  [L=293]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (293 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       113  (0.0275475); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.16s 00:00:00.43 Elapsed: 00:00:00.31
# Mc/sec: 1247.51
//
Query:       MMETSP1137-20121227|857_1  [L=161]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (161 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       118  (0.0287665); expected 82.0 (0.02)
Passed bias filter:                      112  (0.0273038); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.17s 00:00:00.36 Elapsed: 00:00:00.61
# Mc/sec: 348.36
//
Query:       MMETSP1137-20121227|858_1  [L=320]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.018   12.1   0.0      0.029   11.4   0.0    1.2  1  TIGR03956 rSAM_HydE: [FeFe] hydrogenase H-cluster radical SAM maturase HydE


Domain annotation for each model (and alignments):
>> TIGR03956  rSAM_HydE: [FeFe] hydrogenase H-cluster radical SAM maturase HydE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   7.1e-06     0.029     147     186 ..      51      90 ..      43      96 .. 0.87

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 7.1e-06
  TIGR03956 147 feaGadryllrhetaneehyeklhPeelslenrkqclkdl 186
                +++ a r llr   a+ +h ++lhP+el l++r    ++l
  MMETSP1137-20121227|858_1  51 VDSNAMRLLLRSSPADGAHGRRLHPSELGLTERSATQSSL 90 
                678899*************************998776666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (320 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        94  (0.0229157); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.25u 0.14s 00:00:00.39 Elapsed: 00:00:00.39
# Mc/sec: 1082.99
//
Query:       MMETSP1137-20121227|859_1  [L=204]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.8e-10   37.4   0.0    9.1e-10   36.7   0.0    1.3  1  TIGR00332 neela_ferrous: desulfoferrodoxin ferrous iron-binding domain
    6.9e-09   33.8   0.0    9.3e-09   33.4   0.0    1.2  1  TIGR00320 dfx_rbo: desulfoferrodoxin
  ------ inclusion threshold ------
       0.11   10.7   1.9        0.2    9.9   1.3    1.4  1  TIGR02811 formate_TAT: formate dehydrogenase region TAT target


Domain annotation for each model (and alignments):
>> TIGR00332  neela_ferrous: desulfoferrodoxin ferrous iron-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.7   0.0   6.7e-13   9.1e-10       6     100 ..     105     198 ..     100     203 .. 0.80

  Alignments for each domain:
  == domain 1    score: 36.7 bits;  conditional E-value: 6.7e-13
  TIGR00332   6 kkekhvPvievkdregakvevkvkvgkeiphPmeee..hfie..Wi.elvagdlvlkkelvvgdaekaeklsvdapsfkveksskltalsyCnihGlWey 100
                 +ekh P+i +   + ++  +  +v  e+ph m+ +  hfie  W+ e+   ++  +k l +gd+ + + l+   p     k  k+  l yCn+hGlWe+
  MMETSP1137-20121227|859_1 105 APEKHLPIIKIFGTKITTSGLSSQVEMEVPHVMDADkpHFIEymWMkEISSSKIFAAKRLRAGDNAPPT-LVASLP-----KGAKVLPLLYCNLHGLWEG 198
                589*********9999999999999*******9754449**8335456777788888999999988877.444444.....478999***********87 PP

>> TIGR00320  dfx_rbo: desulfoferrodoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.4   0.0   6.8e-12   9.3e-09      40     123 ..     100     197 ..      79     199 .. 0.74

  Alignments for each domain:
  == domain 1    score: 33.4 bits;  conditional E-value: 6.8e-12
  TIGR00320  40 kttdaakekhvpviektgngvkv.....kvg.svahpmeek..hyie..wieliaddvvy.rkdlkpgda..peaeflv.kadkvvareycnihglwk 123
                +++  a+ekh+p+i+  g+++       +v  +v+h m+ +  h+ie  w++ i+  +++  k l+ gd+  p  + ++ k +kv+   ycn+hglw+
  MMETSP1137-20121227|859_1 100 RNAKGAPEKHLPIIKIFGTKITTsglssQVEmEVPHVMDADkpHFIEymWMKEISSSKIFaAKRLRAGDNapPTLVASLpKGAKVLPLLYCNLHGLWE 197
                567789********98777665411111554389****75334***955676666666552799****98433444445799***************6 PP

>> TIGR02811  formate_TAT: formate dehydrogenase region TAT target
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   1.3   0.00015       0.2       5      36 ..      55      86 ..      53     103 .. 0.73

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 0.00015
  TIGR02811  5 qkadlsRRdLLkglavgaaagavaaatgrvas 36
               ++++ sRR  L   av aa+g+v aa   +a+
  MMETSP1137-20121227|859_1 55 KPEGISRRAVLASSAVLAAGGSVSAAEMVAAA 86
               67789*************99999998655432 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (204 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       148  (0.03608); expected 82.0 (0.02)
Passed bias filter:                      128  (0.0312043); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.23u 0.20s 00:00:00.43 Elapsed: 00:00:00.43
# Mc/sec: 626.18
//
Query:       MMETSP1137-20121227|860_1  [L=470]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.2e-26   90.0   1.7    1.3e-25   88.1   1.1    1.8  1  TIGR03864 PQQ_ABC_ATP: ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system
    1.9e-23   80.7   1.7    1.9e-23   80.7   1.2    1.7  2  TIGR02868 CydC: thiol reductant ABC exporter, CydC subunit
    5.9e-21   72.9   0.0    8.9e-21   72.3   0.0    1.3  1  TIGR01188 drrA: daunorubicin resistance ABC transporter, ATP-binding protein
      1e-20   72.2   0.2    1.3e-10   39.2   0.0    2.1  2  TIGR02673 FtsE: cell division ATP-binding protein FtsE
    1.8e-20   71.1   5.3    5.3e-20   69.6   1.9    2.5  2  TIGR03873 F420-0_ABC_ATP: proposed F420-0 ABC transporter, ATP-binding protein
    3.8e-20   70.1   0.5    3.8e-20   70.1   0.4    2.3  2  TIGR02857 CydD: thiol reductant ABC exporter, CydD subunit
    1.1e-19   68.8   0.0    1.8e-19   68.0   0.0    1.3  1  TIGR01277 thiQ: thiamine ABC transporter, ATP-binding protein
    1.3e-19   67.8   0.1    3.5e-19   66.4   0.1    1.6  1  TIGR03375 type_I_sec_LssB: type I secretion system ATPase
    5.5e-19   66.2   0.9    9.3e-19   65.5   0.1    1.7  1  TIGR01166 cbiO: cobalt ABC transporter, ATP-binding protein
    2.3e-18   64.4   0.4    7.7e-18   62.7   0.3    1.8  1  TIGR01189 ccmA: heme ABC exporter, ATP-binding protein CcmA
    2.7e-18   64.2   0.6    2.4e-08   31.6   0.0    2.1  2  TIGR02982 heterocyst_DevA: ABC exporter ATP-binding subunit, DevA family
    3.3e-18   63.9   2.9    8.1e-17   59.4   2.0    2.1  1  TIGR02769 nickel_nikE: nickel import ATP-binding protein NikE
    1.2e-17   62.0   0.1    2.9e-08   31.3   0.0    2.1  2  TIGR02315 ABC_phnC: phosphonate ABC transporter, ATP-binding protein
      2e-17   61.2   0.1      7e-10   36.5   0.0    2.2  2  TIGR03608 L_ocin_972_ABC: putative bacteriocin export ABC transporter, lactococcin 972 group
    2.6e-17   60.1   0.4    5.8e-17   59.0   0.3    1.5  1  TIGR03796 NHLM_micro_ABC1: NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein
    3.9e-17   59.9   0.1    1.5e-08   31.6   0.0    2.2  2  TIGR03719 ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family
    4.2e-17   60.2   0.1    7.2e-17   59.5   0.1    1.3  1  TIGR02142 modC_ABC: molybdate ABC transporter, ATP-binding protein
    8.4e-17   59.5   0.3    9.8e-08   29.8   0.0    2.2  2  TIGR00960 3a0501s02: type II secretory pathway family protein
    2.5e-16   57.7   0.0    3.9e-16   57.1   0.0    1.2  1  TIGR00968 3a0106s01: sulfate ABC transporter, ATP-binding protein
    1.6e-15   55.2   0.0    2.7e-15   54.4   0.0    1.3  1  TIGR03522 GldA_ABC_ATP: gliding motility-associated ABC transporter ATP-binding subunit GldA
    4.9e-15   53.5   0.3      4e-07   27.6   0.0    2.2  2  TIGR02211 LolD_lipo_ex: lipoprotein releasing system, ATP-binding protein
    6.6e-15   52.4   0.1      8e-07   25.8   0.0    2.1  2  TIGR01842 type_I_sec_PrtD: type I secretion system ATPase
    7.3e-15   52.6   2.0    2.2e-14   51.0   1.4    1.6  1  TIGR01288 nodI: nodulation ABC transporter NodI
    1.5e-14   51.6   0.1    1.8e-08   31.6   0.0    2.1  2  TIGR02314 ABC_MetN: D-methionine ABC transporter, ATP-binding protein
    4.1e-14   49.9   0.1    7.9e-08   29.1   0.0    2.4  3  TIGR01193 bacteriocin_ABC: ABC-type bacteriocin transporter
    1.2e-13   49.1   0.0    2.9e-13   47.8   0.0    1.6  1  TIGR03740 galliderm_ABC: lantibiotic protection ABC transporter, ATP-binding subunit
    1.3e-13   48.1   0.5    3.6e-13   46.7   0.4    1.7  1  TIGR02203 MsbA_lipidA: lipid A export permease/ATP-binding protein MsbA
    2.5e-13   47.3   0.2    8.5e-13   45.6   0.2    1.8  1  TIGR02204 MsbA_rel: ABC transporter, permease/ATP-binding protein
    1.5e-12   45.3   2.7    1.2e-11   42.2   1.9    2.0  1  TIGR03265 PhnT2: putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein
    1.9e-12   44.1   0.0    1.5e-11   41.1   0.0    1.9  1  TIGR00958 3a01208: antigen peptide transporter 2
    3.4e-12   44.1   0.2      1e-05   22.9   0.0    2.2  2  TIGR02324 CP_lyasePhnL: phosphonate C-P lyase system protein PhnL
    3.6e-12   43.4   0.7    1.5e-06   24.8   0.1    2.1  2  TIGR03797 NHLM_micro_ABC2: NHLM bacteriocin system ABC transporter, ATP-binding protein
    5.8e-12   43.4   0.0    1.1e-11   42.4   0.0    1.5  1  TIGR03410 urea_trans_UrtE: urea ABC transporter, ATP-binding protein UrtE
      6e-12   43.6   0.3    1.1e-11   42.7   0.2    1.4  1  TIGR03771 anch_rpt_ABC: anchored repeat-type ABC transporter, ATP-binding subunit
    9.3e-12   42.1   0.1    5.5e-11   39.5   0.0    1.8  1  TIGR01194 cyc_pep_trnsptr: cyclic peptide transporter
      1e-11   42.6   0.0    1.1e-06   26.1   0.0    2.1  2  TIGR01978 sufC: FeS assembly ATPase SufC
    1.4e-11   41.9   0.2    3.8e-11   40.4   0.2    1.7  1  TIGR01187 potA: polyamine ABC transporter, ATP-binding protein
    1.9e-11   41.9   0.0    2.3e-07   28.5   0.0    2.2  2  TIGR03411 urea_trans_UrtD: urea ABC transporter, ATP-binding protein UrtD
    5.8e-11   39.2   0.3      8e-10   35.4   0.2    2.0  1  TIGR01846 type_I_sec_HlyB: type I secretion system ATPase
    1.4e-10   38.5   0.7    3.6e-10   37.2   0.5    1.6  1  TIGR03258 PhnT: 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT
    1.7e-10   38.4   0.0    3.2e-10   37.5   0.0    1.4  1  TIGR01186 proV: glycine betaine/L-proline transport ATP binding subunit
    1.7e-10   38.5   0.0    2.8e-10   37.8   0.0    1.3  1  TIGR02770 nickel_nikD: nickel import ATP-binding protein NikD
    3.1e-10   37.9   0.4    3.2e-09   34.5   0.3    2.1  1  TIGR01184 ntrCD: nitrate ABC transporter, ATP-binding proteins C and D
    6.9e-09   33.2   0.0    0.00051   17.3   0.0    2.3  2  TIGR00972 3a0107s01c2: phosphate ABC transporter, ATP-binding protein
    7.5e-09   33.0   0.3    0.00023   18.3   0.0    2.2  2  TIGR03005 ectoine_ehuA: ectoine/hydroxyectoine ABC transporter, ATP-binding protein EhuA
    8.1e-09   32.2   0.1    8.6e-08   28.9   0.0    1.9  1  TIGR02633 xylG: D-xylose ABC transporter, ATP-binding protein
    1.7e-08   32.1   0.2    0.00092   16.6   0.0    2.2  2  TIGR02323 CP_lyasePhnK: phosphonate C-P lyase system protein PhnK
    2.4e-08   30.8   3.3    2.7e-07   27.4   2.3    1.9  1  TIGR00955 3a01204: pigment precursor permease
    4.8e-08   29.8   0.0    0.00061   16.3   0.0    2.1  2  TIGR03269 met_CoM_red_A2: methyl coenzyme M reductase system, component A2
    2.9e-07   26.1   0.1      1e-06   24.3   0.1    1.6  2  TIGR00957 MRP_assoc_pro: multi drug resistance-associated protein (MRP)
    3.4e-07   27.4   0.9    0.00094   16.1   0.1    2.2  2  TIGR03415 ABC_choXWV_ATP: choline ABC transporter, ATP-binding protein
    4.7e-07   26.6   0.0    1.6e-06   24.9   0.0    1.7  1  TIGR01192 chvA: glucan exporter ATP-binding protein
    7.1e-07   24.2   0.0      1e-06   23.7   0.0    1.2  1  TIGR01257 rim_protein: rim ABC transporter
    5.1e-05   18.7   0.1     0.0001   17.7   0.0    1.4  1  TIGR01271 CFTR_protein: cystic fibrosis transmembrane conductor regulator (CFTR)
    7.7e-05   18.9   0.0     0.0064   12.5   0.0    2.0  2  TIGR00630 uvra: excinuclease ABC subunit A
    0.00081   14.9   0.3       0.21    6.9   0.1    2.0  2  TIGR00956 3a01205: pleiotropic drug resistance family protein
     0.0069   12.7   0.1      0.015   11.6   0.0    1.4  2  TIGR00954 3a01203: peroxysomal long chain fatty acyl transporter
  ------ inclusion threshold ------
       0.64    6.9   4.1        1.8    5.5   0.1    2.6  3  TIGR00611 recf: DNA replication and repair protein RecF


Domain annotation for each model (and alignments):
>> TIGR03864  PQQ_ABC_ATP: ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.1   1.1   1.8e-27   1.3e-25       4     213 ..      17     227 ..      14     244 .. 0.81

  Alignments for each domain:
  == domain 1    score: 88.1 bits;  conditional E-value: 1.8e-27
  TIGR03864   4 veglsfaygkr.ralddvsltvakgefvaLLGpnGaGkstLfslltrLyeakegeikvaGldlrrapkealarlGvvfqqstlDldlsveqnlryhaaLhGlsrae...aeerieealarlglaer.aeekvreLnGGhrrrveiarallhePklLLlDeatvGLDiesraalveevre.lvreeglsvLWathlvdeveae.drlvvlhkGkvlaq 213
                ++++ f+ygk   +l+ +sl++++g   +LLG nG GkstL++l+++  +a+ege++v+G+   +++  al+   v          l v++       L G+   +      r +++l+ lg+ +    +++ +++ G+rrrv +  +ll e +l+LlDeat  LD+++raal++ ++e  ++++g +v+  th++d ++a   ++  l++G++l +
  MMETSP1137-20121227|860_1  17 LRDVYFSYGKGgDTLQAISLNLPQGGRLVLLGANGGGKSTLLKLIAGRRKAREGEVEVLGKPAFETTALALQVTLVADEWDESICYLPVRKV------LSGVCTDSnvlRMPRTARLLRALGIDANlLGSNLSAISSGQRRRVQLLCSLLPERALILLDEATNTLDVRARAALLDFLKEeECERRGATVVLCTHIFDGLDAWpTHVAHLERGRLLRS 227
                6789999**96379************************************************999988888754443333333344555554......55554444000456778899999*987725788********************************************998626999***************986145667999998765 PP

>> TIGR02868  CydC: thiol reductant ABC exporter, CydC subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.7   1.2   2.7e-25   1.9e-23     331     528 ..      11     204 ..       2     206 .. 0.84
   2 ?   -3.2   0.1       7.4   5.3e+02     222     348 ..     386     408 ..     356     426 .. 0.47

  Alignments for each domain:
  == domain 1    score: 80.7 bits;  conditional E-value: 2.7e-25
  TIGR02868 331 ekptlelrdlsvsypgaeevlkgvsldlepGervavvGasGaGKstLlallaglldplkGevtldgvsvaslsesevrrvvsvlaqd..aHlFdttvreNlrlarpdatdeellaaLervgLadwlraLpdGldtk.lgeggarlSGGerqRlalARaLladapvllLDEPtehLDaeteeelledLlaaeegrt...vvlvth 528
                e++  +lrd+ +sy ++   l+++sl+l++G r+ ++Ga G GKstLl+l+ag  ++++Gev + g ++ +   ++++  v+++a++    +    vr+   +  + +td ++l++ + ++L + l     G+d++ lg++ +++S G+r+R+ l   Ll +  ++lLDE t  LD+ ++++ll+ L + e +r+   vvl th
  MMETSP1137-20121227|860_1  11 EAAAFVLRDVYFSYGKGGDTLQAISLNLPQGGRLVLLGANGGGKSTLLKLIAGRRKAREGEVEVLGKPAFET--TALALQVTLVADEwdESICYLPVRK---VLSGVCTDSNVLRMPRTARLLRAL-----GIDANlLGSNLSAISSGQRRRVQLLCSLLPERALILLDEATNTLDVRARAALLDFLKEEECERRgatVVLCTH 204
                467789************************************************************888775..7777777777775115566666665...446889*****9999999997665.....667652688899*********************************************6665554455999999 PP

  == domain 2    score: -3.2 bits;  conditional E-value: 7.4
  TIGR02868 222 aereltraekraaaaealgaaltllaaGlavllallvgveavadgrlapvalAvlvLlpLaafealaalpaAaqqltrvraaaeRieevldakvevaeasapaaeaaasekptlelrdlsvsypgae 348
                ae+++                                                                                                         +++ e+++ls+ + g  
  MMETSP1137-20121227|860_1 386 AESDAK--------------------------------------------------------------------------------------------------------TVEEETAQLSALWAGTM 408
                222222........................................................................................................23333333333333333 PP

>> TIGR01188  drrA: daunorubicin resistance ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.3   0.0   1.3e-22   8.9e-21       8     211 ..      30     233 ..      23     312 .. 0.81

  Alignments for each domain:
  == domain 1    score: 72.3 bits;  conditional E-value: 1.3e-22
  TIGR01188   8 AvdgvnlkveegevfglLGPnGAGKtttikmLttllkPdsGtarvaGyDvvrepdevRrsigvvpqkasvdedLtarenlellgelyglpkkeaeeraeellelvelkea.adkkvktysgGmrrrlelaasliaqPevlfLDEPtiGLDprtrraiwdlieelkke..gvtilltthyleeadkladrvaiidkGkiiaedtpeeL 211
                 ++ ++l++++g  + lLG nG GK+t++k++++  k  +G++ v G    +  + +  ++++v ++   de++      ++l+ +   ++  +  r+++ll  + +       ++   s G+rrr++l +sl+ + +++ LDE t  LD+r+r+a+ d+++e + e  g t++l+th ++  d+   +va +++G+++       L
  MMETSP1137-20121227|860_1  30 TLQAISLNLPQGGRLVLLGANGGGKSTLLKLIAGRRKAREGEVEVLGKPAFETTALA-LQVTLVADE--WDESICYLPVRKVLSGVCTDSNVLRMPRTARLLRALGIDANlLGSNLSAISSGQRRRVQLLCSLLPERALILLDEATNTLDVRARAALLDFLKEEECErrGATVVLCTHIFDGLDAWPTHVAHLERGRLLRSLPFASL 233
                67899******************************************9988766654.455566554..6777777777788889999999999*************76526799**********************************************98765556****************************9976555555 PP

>> TIGR02673  FtsE: cell division ATP-binding protein FtsE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.2   0.0   1.8e-12   1.3e-10       4      66 ..      17      79 ..      15      91 .. 0.93
   2 !   31.1   0.0   5.4e-10   3.9e-08     118     213 ..     124     222 ..     109     223 .. 0.86

  Alignments for each domain:
  == domain 1    score: 39.2 bits;  conditional E-value: 1.8e-12
  TIGR02673  4 lekvskeyaagveaLkdvslkiekgeflfltGasGaGkttllklllgaekpsrGevevagedv 66
               l++v+++y +g ++L+ +sl++ +g  l l Ga G Gk+tllkl+ g+ k+ +Gevev g+  
  MMETSP1137-20121227|860_1 17 LRDVYFSYGKGGDTLQAISLNLPQGGRLVLLGANGGGKSTLLKLIAGRRKAREGEVEVLGKPA 79
               6899******************************************************99875 PP

  == domain 2    score: 31.1 bits;  conditional E-value: 5.4e-10
  TIGR02673 118 veevlelvgledka.kalpeelsgGeqqRvaiaRaivnkPelllaDePtGnlDdelserildllke..lnkrGttvivathdeelvervkkrvlelekg 213
                  ++l+++g++      + +++s G + Rv +  +++ + +l+l De t  lD +  + +ld lke  +++rG+tv++ th  + +++  ++v +le+g
  MMETSP1137-20121227|860_1 124 TARLLRALGIDANLlGSNLSAISSGQRRRVQLLCSLLPERALILLDEATNTLDVRARAALLDFLKEeeCERRGATVVLCTHIFDGLDAWPTHVAHLERG 222
                5677888888766514566889******************************************8522789**********999999999999999887 PP

>> TIGR03873  F420-0_ABC_ATP: proposed F420-0 ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.6   1.9   7.4e-22   5.3e-20      17     217 ..      31     226 ..      20     239 .. 0.84
   2 ?    0.6   0.0      0.84        59      62      88 ..     368     394 ..     336     435 .. 0.80

  Alignments for each domain:
  == domain 1    score: 69.6 bits;  conditional E-value: 7.4e-22
  TIGR03873  17 vddvdvtaPaGaltgllGPnGsGkstllrllaGllapdaGevdlagadlkalsrrararrvalveqdsdaevp.lsvrdvvalGriPhrslfaadsdedaevvdralarvel.ssladrdlstlsGGerqrvhlaralaqePklllldePtnhldvsaqlellalvrela..aegvtvvvalhdlnlaasvcdhvvvldgGrvva 217
                ++ + ++ P+G    llG nG Gkstll+l+aG  ++ +Gev++ g+   a++  a a++v+lv  + d+++  l vr+v + G      ++          ++r+l + ++ ++l   +ls++s G+r+rv+l  +l  e  l+llde tn ldv+a+ +ll +++e      g+tvv+  h ++   +   hv  l+ Gr+  
  MMETSP1137-20121227|860_1  31 LQAISLNLPQGGRLVLLGANGGGKSTLLKLIAGRRKAREGEVEVLGKP--AFETTALALQVTLVADEWDESICyLPVRKV-LSGVCTDSNVLRM------PRTARLLRALGIdANLLGSNLSAISSGQRRRVQLLCSLLPERALILLDEATNTLDVRARAALLDFLKEEEceRRGATVVLCTHIFDGLDAWPTHVAHLERGRLLR 226
                56788899************************************9986..7788899*******9999888652777775.4444433333332......24566777766624688999**********************************************9987446689**********999*************975 PP

  == domain 2    score: 0.6 bits;  conditional E-value: 0.84
  TIGR03873  62 gadlkalsrrararrvalveqdsdaev 88 
                 + + a+++r  a+  al+e d+++  
  MMETSP1137-20121227|860_1 368 QNAISAMQQRLAACSTALAESDAKTVE 394
                456899**************9998754 PP

>> TIGR02857  CydD: thiol reductant ABC exporter, CydD subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.1   0.4   5.4e-22   3.8e-20     314     515 ..       7     204 ..       1     216 [. 0.78
   2 ?   -2.6   0.1         6   4.2e+02      75     120 ..     373     417 ..     367     423 .. 0.63

  Alignments for each domain:
  == domain 1    score: 70.1 bits;  conditional E-value: 5.4e-22
  TIGR02857 314 ltaaassslelenvsvay.egrkpalkevsltvepgelvalvGaSGaGKstllklllgfvepteGailvngaelaeldadswrkqiawvpQk..PllfegtvaenirlarkdaseaevkealeragldelvkalpqgleteiGergagLSgGqrqRlaLArallrdapllllDEPtahLDaeteaevlealrela...egrtvllvaH 515
                +t+ ++ +  l++v ++y +g +  l+ +sl++++g +++l+Ga G GKstllkl++g  ++ eG+++v g+   ++++ ++  q++ v+ +    +++  v++ +   + d +   + + ++       ++al+   +  +G++ + +S Gqr+R+ L   ll ++ l+llDE t  LD ++ a++l+ l+e     +g+tv+l +H
  MMETSP1137-20121227|860_1   7 MTDGEAAAFVLRDVYFSYgKGGD-TLQAISLNLPQGGRLVLLGANGGGKSTLLKLIAGRRKAREGEVEVLGK--PAFETTALALQVTLVADEwdESICYLPVRKVLSGVCTDSNVLRMPRTARL------LRALG-IDANLLGSNLSAISSGQRRRVQLLCSLLPERALILLDEATNTLDVRARAALLDFLKEEEcerRGATVVLCTH 204
                5555556789999*****66666.9********************************************999..45566667777777776511445555555555444444444444444444......44443.122458**********************************************9998653335899******* PP

  == domain 2    score: -2.6 bits;  conditional E-value: 6
  TIGR02857  75 vksqlrerllekvaalGpavlqkkksgelatlllegvdalddYfar 120
                + +q  ++  +++a+  +++++ +++++l+ l +  ++ald++ + 
  MMETSP1137-20121227|860_1 373 AMQQRLAACSTALAESDAKTVE-EETAQLSALWAGTMRALDAFTTA 417
                4444444555555555555555.88888888888888888888765 PP

>> TIGR01277  thiQ: thiamine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.0   0.0   2.6e-21   1.8e-19      16     207 ..      33     224 ..      16     227 .. 0.89

  Alignments for each domain:
  == domain 1    score: 68.0 bits;  conditional E-value: 2.6e-21
  TIGR01277  16 efdlsveaGervailGesGaGkstllnliaGflepasGeikvndkdhtrsapyerpvsmlfqe.nnlfahltvrqniglGlkpglklnavqkekvedvarqvGia.dylerlpeelsGGqrqrvalarclvrekpillldepfsaldpklreemlalvk.kladekkltlllvthslsdaaaiasqvvvvedGki 207
                  +l++ +G r+ +lG  G Gkstll+liaG  +  +Ge+ v +k   +++     v+++  e ++   +l vr+ ++         n ++  +   + r +Gi+ ++l      +s Gqr+rv l   l+ e+ ++llde   +ld + r  +l ++k + ++++  t++l th  + + a  ++v+ +e G++
  MMETSP1137-20121227|860_1  33 AISLNLPQGGRLVLLGANGGGKSTLLKLIAGRRKAREGEVEVLGKPAFETTALALQVTLVADEwDESICYLPVRKVLSGVCTD---SNVLRMPRTARLLRALGIDaNLLGSNLSAISSGQRRRVQLLCSLLPERALILLDEATNTLDVRARAALLDFLKeEECERRGATVVLCTHIFDGLDAWPTHVAHLERGRL 224
                57899*******************************************************999456799*****999754444...46777788888999****74788888899****************************************9887257****************************99996 PP

>> TIGR03375  type_I_sec_LssB: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.4   0.1     5e-21   3.5e-19     466     663 ..      15     207 ..       7     227 .. 0.85

  Alignments for each domain:
  == domain 1    score: 66.4 bits;  conditional E-value: 5e-21
  TIGR03375 466 ielknvsfkYpeeekaaLknvslkikpGekvaiiGriGsGKstllklllglyepteGsvlldgvdirqidpadlrrnigyvpqdvtLfyGtlrdNialgapaaedeellraaelaGvtefvkkhpkGldlqigerGesLSgGQrqavalaRallkdppillLDEPtsalDnsseekllerLkella...dkTlvlvtHrts 663
                + l++v f+Y ++   +L+ +sl++  G ++ ++G +G GKstllkl++g  +++eG+v + g  + +     l+ ++   + d ++ y  +r  +   +  ++d+++lr  ++a + + +  +++ l    g + +++S GQr+ v l   ll +++++lLDE t+ lD ++ + ll+ Lke      + T+vl tH   
  MMETSP1137-20121227|860_1  15 FVLRDVYFSY-GKGGDTLQAISLNLPQGGRLVLLGANGGGKSTLLKLIAGRRKAREGEVEVLGKPAFETTALALQVTLVADEWDESICYLPVRKVL---SGVCTDSNVLRMPRTARLLRALGIDANLL----GSNLSAISSGQRRRVQLLCSLLPERALILLDEATNTLDVRARAALLDFLKEEECerrGATVVLCTHIFD 207
                6799******.88999*********************************************9998888777777777777788999*******865...45689********9998877665555544....4445789******************************************9875534588*******665 PP

>> TIGR01166  cbiO: cobalt ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.5   0.1   1.3e-20   9.3e-19       1     186 [.      24     205 ..      24     208 .. 0.85

  Alignments for each domain:
  == domain 1    score: 65.5 bits;  conditional E-value: 1.3e-20
  TIGR01166   1 yedeaevlkglnlavergevlallGanGaGkstlllhlnGllrPksGkvlldGeeldysrkgllelrkkvalvlqdpddqlfaadvdedvafgplnlGlseaeverrvrealaavdis.gleerpthllsgGekkrvaiagavalrpdvllldePtagldpaGaeqlleilrk..lreeGktvvisthd 186
                y ++ + l+ ++l++ +g +l+llGanG Gkstll+ ++G  + ++G+v + G++  ++   l     +v+lv  + d+ + +  v + ++    +  +       r    l+a++i+ +l     + +s G+++rv +   +  +  ++llde t  ld + +  ll+ l++   +  G tvv++th 
  MMETSP1137-20121227|860_1  24 YGKGGDTLQAISLNLPQGGRLVLLGANGGGKSTLLKLIAGRRKAREGEVEVLGKPA-FETTAL---ALQVTLVADEWDESICYLPVRKVLSGVCTDSNVLRMP---RTARLLRALGIDaNLLGSNLSAISSGQRRRVQLLCSLLPERALILLDEATNTLDVRARAALLDFLKEeeCERRGATVVLCTHI 205
                6778899***********************************************95.766655...579***************9999877554433333332...4444577777753577788999***************9999************************85227789*********5 PP

>> TIGR01189  ccmA: heme ABC exporter, ATP-binding protein CcmA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.7   0.3   1.1e-19   7.7e-18      15     186 ..      30     205 ..      22     215 .. 0.86

  Alignments for each domain:
  == domain 1    score: 62.7 bits;  conditional E-value: 1.1e-19
  TIGR01189  15 lleglsfelaaGealvveGpnGiGKttLLRilaGLlkpesGevelndkelaeqrdelaeellylgHldglKaeLsalEnLkfyaallqseqk.tveealekvgLsg.ledlpvaqLsAGqkrRlalarLllskaplWiLDEPttalDkegvellaella.aHlargG.ivllathq 186
                 l+++s++l  G  lv+ G nG GK+tLL+++aG  k+ +Geve+ +k+  e++    + +l +   d     L ++  L+  +++++  +   +   l ++g+++ l    ++++s Gq+rR+ l   ll ++ l +LDE t +lD+++ + l + l+ + ++r G +v+l th+
  MMETSP1137-20121227|860_1  30 TLQAISLNLPQGGRLVLLGANGGGKSTLLKLIAGRRKAREGEVEVLGKPAFETTALALQVTLVADEWDESICYLPVRKVLSGVCTDSNVLRMpRTARLLRALGIDAnLLGSNLSAISSGQRRRVQLLCSLLPERALILLDEATNTLDVRARAALLDFLKeEECERRGaTVVLCTHI 205
                57899********************************************999998888888888888988999999999999999999777667888899999875156778889999********************************88777777515677666168899997 PP

>> TIGR02982  heterocyst_DevA: ABC exporter ATP-binding subunit, DevA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.0   0.0   5.5e-10   3.9e-08       8      69 ..      21      79 ..      15      95 .. 0.83
   2 !   31.6   0.0   3.4e-10   2.4e-08     121     219 ..     123     224 ..     107     225 .. 0.84

  Alignments for each domain:
  == domain 1    score: 31.0 bits;  conditional E-value: 5.5e-10
  TIGR02982  8 nhyygkgelrkqvlfdinleiepgeiviltGpsGsGkttlltligglrsvqeGelkvlgkel 69
                  ygkg      l+ i+l++ +g  ++l G+ G Gk tll li+g r+++eGe++vlgk  
  MMETSP1137-20121227|860_1 21 YFSYGKGG---DTLQAISLNLPQGGRLVLLGANGGGKSTLLKLIAGRRKAREGEVEVLGKPA 79
               44555554...568999****999999999****************************9975 PP

  == domain 2    score: 31.6 bits;  conditional E-value: 3.4e-10
  TIGR02982 121 kaeelleavgleer.ldykpedlsgGqkqrvaiaralvarPklvladePtaaldkksgrevvellqkl.areqgttillvthdnrildv.adrivkmedGkl 219
                +++ ll+a+g++ + l  + + +s Gq++rv +  +l  +  l+l de t +ld ++  ++++ l++   + +g+t++l th    ld     + ++e+G+l
  MMETSP1137-20121227|860_1 123 RTARLLRALGIDANlLGSNLSAISSGQRRRVQLLCSLLPERALILLDEATNTLDVRARAALLDFLKEEeCERRGATVVLCTHIFDGLDAwPTHVAHLERGRL 224
                56778999999876256778899*****************************************9976166789********87777652567778888876 PP

>> TIGR02769  nickel_nikE: nickel import ATP-binding protein NikE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.4   2.0   1.1e-18   8.1e-17      26     236 ..      30     231 ..      22     240 .. 0.88

  Alignments for each domain:
  == domain 1    score: 59.4 bits;  conditional E-value: 1.1e-18
  TIGR02769  26 vldnvslsleeGetvallGrsGaGkstlarlllGlekPakGevsfrGqdlakldrkqrkafrrdvqlvfqdsisavnprksvreiigePlrhltsldeserkariaellelvelrsevldklPrqlsGGqlqriniaralavePklivldeavsnldlvlqasilellkklk.qefGlaylfithdlrlvqkfaqrvlvldeGqiveeikva 236
                 l+ +sl+l +G  + llG  G Gkstl +l+ G  k  +Gev   G++  +     + a+  +v lv  +   ++     vr++++     + + ++  r  r+a+ll++++++++ l    + +s Gq +r+ +  +l  e  li+ldea   ld+  +a++l+ lk+ + ++ G ++++ th +   +    +v+ l++G+++   + a
  MMETSP1137-20121227|860_1  30 TLQAISLNLPQGGRLVLLGANGGGKSTLLKLIAGRRKAREGEVEVLGKPAFE-----TTALALQVTLVADEWDESIC-YLPVRKVLSG----VCTDSNVLRMPRTARLLRALGIDANLLGSNLSAISSGQRRRVQLLCSLLPERALILLDEATNTLDVRARAALLDFLKEEEcERRGATVVLCTHIFDGLDAWPTHVAHLERGRLLRSLPFA 231
                6899********************************************9764.....45677778888777666653.4556666554....444466678899****************************************************************98762678****************************99876655 PP

>> TIGR02315  ABC_phnC: phosphonate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.5   0.0   2.8e-09     2e-07       5      64 ..      18      77 ..      15      91 .. 0.89
   2 !   31.3   0.0     4e-10   2.9e-08     128     224 ..     126     224 ..     104     234 .. 0.89

  Alignments for each domain:
  == domain 1    score: 28.5 bits;  conditional E-value: 2.8e-09
  TIGR02315  5 enlskvypngkqalknvnleikkGelvaviGlsGaGkstllrsinrlveissgsillegk 64
               +++  +y++g  +l++++l++ +G  ++++G  G Gkstll+ i +  +  +g++++ gk
  MMETSP1137-20121227|860_1 18 RDVYFSYGKGGDTLQAISLNLPQGGRLVLLGANGGGKSTLLKLIAGRRKAREGEVEVLGK 77
               567789************************************************998876 PP

  == domain 2    score: 31.3 bits;  conditional E-value: 4e-10
  TIGR02315 128 elLervglael.aakradqLsGGqqqRvaiaRalaqqpklilaDEPiasLDpksskqvmdllkr.inkekgitvivnlHqvdlakkyadrivglkagei 224
                +lL+ +g+++    +  +++s Gq+ Rv +  +l+++ +lil DE + +LD ++   ++d lk+  ++++g tv++  H  d   ++ +++  l+ g++
  MMETSP1137-20121227|860_1 126 RLLRALGIDANlLGSNLSAISSGQRRRVQLLCSLLPERALILLDEATNTLDVRARAALLDFLKEeECERRGATVVLCTHIFDGLDAWPTHVAHLERGRL 224
                6777788865414578899*******************************************9736999******************999999999987 PP

>> TIGR03608  L_ocin_972_ABC: putative bacteriocin export ABC transporter, lactococcin 972 group
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.3   0.0   2.2e-07   1.6e-05      12      61 ..      29      78 ..      17      92 .. 0.88
   2 !   36.5   0.0   9.9e-12     7e-10     114     192 ..     123     204 ..     113     208 .. 0.89

  Alignments for each domain:
  == domain 1    score: 22.3 bits;  conditional E-value: 2.2e-07
  TIGR03608 12 eilkklslkiekGelvaivGesGsGKstlLnilgllekkdsgkvilegke 61
                 l+ +sl++ +G  + ++G  G GKstlL +++   k  +g+v + gk 
  MMETSP1137-20121227|860_1 29 DTLQAISLNLPQGGRLVLLGANGGGKSTLLKLIAGRRKAREGEVEVLGKP 78
               57899***************************************998886 PP

  == domain 2    score: 36.5 bits;  conditional E-value: 9.9e-12
  TIGR03608 114 kkkevlekvgl.ekklkkkiyelsgGekqRvalarillkeselilADEPtgsLDkknreevlellke..lkeegktiiivtH 192
                ++ ++l+++g+  + l  ++  +s G++ Rv l   ll e  lil DE t +LD + r+++l++lke   +++g t+++ tH
  MMETSP1137-20121227|860_1 123 RTARLLRALGIdANLLGSNLSAISSGQRRRVQLLCSLLPERALILLDEATNTLDVRARAALLDFLKEeeCERRGATVVLCTH 204
                5678899999977788999**********************************************872257899******** PP

>> TIGR03796  NHLM_micro_ABC1: NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.0   0.3   8.2e-19   5.8e-17     479     692 ..      16     227 ..       7     245 .. 0.80

  Alignments for each domain:
  == domain 1    score: 59.0 bits;  conditional E-value: 8.2e-19
  TIGR03796 479 elrnvtfgysaleapliedfslslkpGqrvAlvGgsGsGkstiaklvaGlyepwsGeilfDgkpreeiprevlanslalvdqdivlfegtvrdnltlwdetipeedlvrAakDAaihdvilarpggyeaelaegganlsGGqrqRleiARaLvknPsiLilDEatsaLDaetEkaidenlr.....rRgctciivaHRLstiRdc.deiivlerGkvver 692
                 lr+v f+y +     ++ +sl+l +G r+ l G+ G Gkst+ kl+aG  +  +Ge+ + gkp+ e +  +l+ +l   + d ++    vr  l   +   ++++++r  + A +  ++   ++ + +    + + +s Gqr R+++  +L  + ++++lDEat +LD ++  a+ + l+     rRg t+++ +H    +     ++  lerG++++ 
  MMETSP1137-20121227|860_1  16 VLRDVYFSYGKGGD-TLQAISLNLPQGGRLVLLGANGGGKSTLLKLIAGRRKAREGEVEVLGKPAFETTALALQVTLVADEWDESICYLPVRKVL---SGVCTDSNVLRMPRTARLLRALGIDANLLGS----NLSAISSGQRRRVQLLCSLLPERALILLDEATNTLDVRARAALLDFLKeeeceRRGATVVLCTHIFDGLDAWpTHVAHLERGRLLRS 227
                599******99865.579**********************************************9888887777777777778888888999866...5788999*******99987665444444433....346799**********************************999887754444489*******9987766443134555666666655 PP

>> TIGR03719  ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.3   0.0   8.3e-09   5.9e-07     338     381 ..      31      74 ..      13      86 .. 0.76
   2 !   31.6   0.0   2.1e-10   1.5e-08     157     240 ..     140     231 ..     123     316 .. 0.71

  Alignments for each domain:
  == domain 1    score: 26.3 bits;  conditional E-value: 8.3e-09
  TIGR03719 338 iddlsfklpkggivGviGpnGaGkstlfklitgkekpdsGelki 381
                ++ +s++lp+gg + ++G+nG Gkstl+kli+g+ k  +Ge+++
  MMETSP1137-20121227|860_1  31 LQAISLNLPQGGRLVLLGANGGGKSTLLKLIAGRRKAREGEVEV 74 
                45677888888888888888888888888888888888888765 PP

  == domain 2    score: 31.6 bits;  conditional E-value: 2.1e-10
  TIGR03719 157 akveklsGGekrrvalcrlllekPdlllldePtnhldaesvaWlekflkeyk....G.tvvavthdryfldnvaeWileldrGeg...ipyk 240
                ++++ +s G++rrv l   ll +  l+llde tn ld  + a l  flke +    G tvv+ th    ld     +  l+rG+    +p+ 
  MMETSP1137-20121227|860_1 140 SNLSAISSGQRRRVQLLCSLLPERALILLDEATNTLDVRARAALLDFLKEEEcerrGaTVVLCTHIFDGLDAWPTHVAHLERGRLlrsLPFA 231
                567899********99888899999************9999999999986542223338999****99***************851114554 PP

>> TIGR02142  modC_ABC: molybdate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.5   0.1     1e-18   7.2e-17      10     225 ..      28     239 ..      20     271 .. 0.84

  Alignments for each domain:
  == domain 1    score: 59.5 bits;  conditional E-value: 1e-18
  TIGR02142  10 gdfeLdvdlelpgkgvtalFGrsGsGktslirliaGLtrpdegeivldgevlqdsrkkiilppekRrvgyvFqeA.rLFpHlsvrenLrYGlkraraeerriseekvielLgie.hLleRlpgkLsGGekqRvaigRAlLssPeLLlmDePLaaLDekrkkeilPyLerlsael.kiPilyvsHsldevarladrvvvledGrvkaagkleevlaskdl 225
                gd+   ++l+lp  g+  l G+ G Gk++l++liaG  +++ege+++ g+  +++++   l+ +   v+ v  e  +   +l vr+ L    +++    r  +++++++ Lgi+ +Ll  + + +s G + Rv +   lL +  L+l+De   +LD + ++ +l +L++ + e     +++  H +d +     +v  le Gr+    + + ++  k+l
  MMETSP1137-20121227|860_1  28 GDTLQAISLNLPQGGRLVLLGANGGGKSTLLKLIAGRRKAREGEVEVLGKPAFETTA---LALQ---VTLVADEWdESICYLPVRKVLSGVCTDS-NVLRMPRTARLLRALGIDaNLLGSNLSAISSGQRRRVQLLCSLLPERALILLDEATNTLDVRARAALLDFLKEEECERrGATVVLCTHIFDGLDAWPTHVAHLERGRLLRSLPFASLQPGKSL 239
                555567899***99*************************************999988...4444...5555555313467899**9998555555.556689***********9569**************************************************98876651688999**********************9887777777665555 PP

>> TIGR00960  3a0501s02: type II secretory pathway family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.8   0.0   1.4e-09   9.8e-08       7      65 ..      20      77 ..      15      89 .. 0.87
   2 !   27.7   0.0     6e-09   4.2e-07     137     216 .]     143     224 ..     112     224 .. 0.90

  Alignments for each domain:
  == domain 1    score: 29.8 bits;  conditional E-value: 1.4e-09
  TIGR00960  7 vskaykgaaelaldnvtvkiekGelvflvGhsGaGkstllklilgiekpsaGkirvsgq 65
               v  +y  + + +l+ +++++++G    l G  G Gkstllkli g+ k+ +G++ v g+
  MMETSP1137-20121227|860_1 20 VYFSYGKGGD-TLQAISLNLPQGGRLVLLGANGGGKSTLLKLIAGRRKAREGEVEVLGK 77
               5566655555.7******************************************99886 PP

  == domain 2    score: 27.7 bits;  conditional E-value: 6e-09
  TIGR00960 137 vqlsgGeqqrvaiaravvnkPallladePtgnlddelsrdilelle..evnraGttvlvathdenlveskrkrvltlskGkl 216
                  +s G+++rv++  +++ + al+l de t  ld      +l++l+  e +r+G tv++ th  + ++  + +v +l++G+l
  MMETSP1137-20121227|860_1 143 SAISSGQRRRVQLLCSLLPERALILLDEATNTLDVRARAALLDFLKeeECERRGATVVLCTHIFDGLDAWPTHVAHLERGRL 224
                4699****************************************9622689*****************************98 PP

>> TIGR00968  3a0106s01: sulfate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.1   0.0   5.4e-18   3.9e-16       5     208 ..      19     223 ..      15     228 .. 0.83

  Alignments for each domain:
  == domain 1    score: 57.1 bits;  conditional E-value: 5.4e-18
  TIGR00968   5 nvskrfGdf.qalddvdlevktGslvallGpsGsGkstllrviaGlekpdsGrilleGrdvtrvkvrdreiGfvfqhya.lfkhltvrdniafGleirkkdkakikakveellelvqle.klgdrypsqlsGGqrqrvalaralavepqvllldepfgaldakvrkelrawlrklhde.vkvttvfvthdqeealevadrivvlekGk 208
                +v  ++G+   +l+ ++l++++G    llG  G Gkstll++iaG  k  +G++ + G+ + ++++   ++ +v +++   + +l vr+ ++ G  +   ++     +  +ll+ ++++ +l  +  s +s Gqr+rv l  +l  e  ++llde   +ld + r  l  +l++   e    t v+ th  +       +++ le+G+
  MMETSP1137-20121227|860_1  19 DVYFSYGKGgDTLQAISLNLPQGGRLVLLGANGGGKSTLLKLIAGRRKAREGEVEVLGKPAFETTALALQVTLVADEWDeSICYLPVRKVLS-G--VCTDSNVLRMPRTARLLRALGIDaNLLGSNLSAISSGQRRRVQLLCSLLPERALILLDEATNTLDVRARAALLDFLKEEECErRGATVVLCTHIFDGLDAWPTHVAHLERGR 223
                5666677642689***********99*************************************************99962578899988654.5..445566667788999999999852678888899*******************************************987755155778889997766555566666666666 PP

>> TIGR03522  GldA_ABC_ATP: gliding motility-associated ABC transporter ATP-binding subunit GldA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.4   0.0   3.8e-17   2.7e-15       7     231 ..      19     245 ..      14     261 .. 0.85

  Alignments for each domain:
  == domain 1    score: 54.4 bits;  conditional E-value: 3.8e-17
  TIGR03522   7 dlsklygkq.kaldevsfeaekGeivGflGPnGaGkstlmkiltgylkadsGsvavagedvlknslevrkniGylPehnPlyldlyvreylefsaalyklkgrklkkrveelielvGlkaeqh.kkigalskGyrqrvGlakallhdPkvlildePttGldPnqlveirevikeia...kdktvilsthimqevealcdrviiinkGkivadkkleelkaaekkkvieve 231
                d+  +ygk  ++l+ +s++  +G  + +lG nG Gkstl+k+++g  ka  G v+v g+ + + +  + ++     e +     l vr+ l   ++    ++ ++  r ++l++  G+ a+     ++a+s G r+rv l  +ll +  +++lde t  ld     ++ + +ke     +  tv+l thi   ++a   +v  +++G+++ +    +l+  ++  ++ ve
  MMETSP1137-20121227|860_1  19 DVYFSYGKGgDTLQAISLNLPQGGRLVLLGANGGGKSTLLKLIAGRRKAREGEVEVLGKPAFETTALALQVTLVADEWDESICYLPVRKVLSGVCTD---SNVLRMPRTARLLRALGIDANLLgSNLSAISSGQRRRVQLLCSLLPERALILLDEATNTLDVRARAALLDFLKEEEcerRGATVVLCTHIFDGLDAWPTHVAHLERGRLLRSLPFASLQPGKSLYQMAVE 245
                56667777427899******9999999***********************************999888888888899999999999**999755544...445578899*********99875378************************************99999999999865111457***************************998888887666665555555 PP

>> TIGR02211  LolD_lipo_ex: lipoprotein releasing system, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.6   0.0   5.7e-09     4e-07      16      68 ..      26      78 ..      15      87 .. 0.89
   2 !   23.9   0.0   7.9e-08   5.6e-06     121     200 ..     123     204 ..     112     225 .. 0.84

  Alignments for each domain:
  == domain 1    score: 27.6 bits;  conditional E-value: 5.7e-09
  TIGR02211 16 leievlkgvsleiekgelvaivGssGsGkstllhllggldkptsGevllkGke 68
               +  ++l+ +sl++ +g  + ++G+ G Gkstll l++g  k+ +Gev++ Gk 
  MMETSP1137-20121227|860_1 26 KGGDTLQAISLNLPQGGRLVLLGANGGGKSTLLKLIAGRRKAREGEVEVLGKP 78
               556789********************************************985 PP

  == domain 2    score: 23.9 bits;  conditional E-value: 7.9e-08
  TIGR02211 121 rakellekvglekri.nkkpselsGGerqrvaiaralvnkPklvladePtgnldkktakkifelllelnkeknta.llvvth 200
                r+++ll+++g++  +   + s++s G+r+rv +  +l+ + +l+l de t  ld ++  +++++l+e + e++ a +++ th
  MMETSP1137-20121227|860_1 123 RTARLLRALGIDANLlGSNLSAISSGQRRRVQLLCSLLPERALILLDEATNTLDVRARAALLDFLKEEECERRGAtVVLCTH 204
                56788999999876526788**********************************************9998876651556777 PP

>> TIGR01842  type_I_sec_PrtD: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.8   0.0   2.2e-08   1.6e-06     332     378 ..      29      75 ..      13     126 .. 0.84
   2 !   25.8   0.0   1.1e-08     8e-07     448     517 ..     138     209 ..     127     226 .. 0.84

  Alignments for each domain:
  == domain 1    score: 24.8 bits;  conditional E-value: 2.2e-08
  TIGR01842 332 ktlkgisfalkaGealaiiGpsgsGkssLarllvGvwlpasGsvrlD 378
                +tl+ is++l +G  l+++G+ g Gks+L +l+ G  +  +G+v++ 
  MMETSP1137-20121227|860_1  29 DTLQAISLNLPQGGRLVLLGANGGGKSTLLKLIAGRRKAREGEVEVL 75 
                79******************************************874 PP

  == domain 2    score: 25.8 bits;  conditional E-value: 1.1e-08
  TIGR01842 448 igegGaaLsgGqrqRiaLaRalygdPklvvLDePnanLDeeGeqalakalke..lkarkitvvvithrpsll 517
                +g++ +a+s+Gqr R+ L   l  + +l++LDe    LD +  +al++ lke    +r++tvv+ th    l
  MMETSP1137-20121227|860_1 138 LGSNLSAISSGQRRRVQLLCSLLPERALILLDEATNTLDVRARAALLDFLKEeeCERRGATVVLCTHIFDGL 209
                57788899******************************************863378999*******976655 PP

>> TIGR01288  nodI: nodulation ABC transporter NodI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.0   1.4   3.1e-16   2.2e-14       7     212 ..      17     223 ..      12     233 .. 0.81

  Alignments for each domain:
  == domain 1    score: 51.0 bits;  conditional E-value: 3.1e-16
  TIGR01288   7 lvgvsksygdk.vvvndlsftiaagecfgllgpngagkstiarlvlglispdegkitvlgepvpararlarakigvvpqfdnldreftvrenllvfgr.yfglstreieevipsllefarleskadvrvadlsggmkrrltlaralindpqllildepttgldpharhliwerlrs..llargktilltthlmeeaerlcdrlcvleagr 212
                l +v  syg+    ++ +s+ + +g  + llg ng gkst+ +l+ g     eg++ vlg+p    + la     v  ++d+    + vr+ l         l+       + +l   a l      +++ +s g +rr+ l ++l+ +  l++lde t  ld  ar  + + l+      rg t++l th+++  +     +  le gr
  MMETSP1137-20121227|860_1  17 LRDVYFSYGKGgDTLQAISLNLPQGGRLVLLGANGGGKSTLLKLIAGRRKAREGEVEVLGKPAFETTALALQVTLVADEWDESICYLPVRKVLSGVCTdSNVLRMPRTARLLRALGIDANL---LGSNLSAISSGQRRRVQLLCSLLPERALILLDEATNTLDVRARAALLDFLKEeeCERRGATVVLCTHIFDGLDAWPTHVAHLERGR 223
                566777777531467899***********************************************99999988888889999999999999886333202333333333333333222222...345789999***********************************99999986225679************9999999999999987 PP

>> TIGR02314  ABC_MetN: D-methionine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.0   3.8e-06   0.00027      11      67 ..      21      77 ..      16      97 .. 0.86
   2 !   31.6   0.0   2.6e-10   1.8e-08     135     221 ..     139     226 ..     110     238 .. 0.88

  Alignments for each domain:
  == domain 1    score: 17.9 bits;  conditional E-value: 3.8e-06
  TIGR02314 11 fdqgdkkikaldnvslfvpkgqifgvigasgagkstlircvnllekptsgavivdgk 67
               +   +k  ++l+ +sl +p+g  + ++ga g gkstl++ +    k  +g+v v gk
  MMETSP1137-20121227|860_1 21 YFSYGKGGDTLQAISLNLPQGGRLVLLGANGGGKSTLLKLIAGRRKAREGEVEVLGK 77
               5555666678999**************************************999887 PP

  == domain 2    score: 31.6 bits;  conditional E-value: 2.6e-10
  TIGR02314 135 dsypsnlsggqkqrvaiaralasepkvllcdeatsaldpattqsilellkein.rrlgltillithemdvvkricdevavidkgelie 221
                 s  s +s gq++rv +  +l  e  ++l deat +ld  +  ++l++lke +  r g t++l th +d +     +va +++g+l+ 
  MMETSP1137-20121227|860_1 139 GSNLSAISSGQRRRVQLLCSLLPERALILLDEATNTLDVRARAALLDFLKEEEcERRGATVVLCTHIFDGLDAWPTHVAHLERGRLLR 226
                566678899*****************************************86525789***************************985 PP

>> TIGR01193  bacteriocin_ABC: ABC-type bacteriocin transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.1   0.0   1.1e-09   7.9e-08     472     537 ..      13      78 ..       2     120 .. 0.87
   2 !   18.2   0.0   2.2e-06   0.00016     600     650 ..     132     183 ..     123     207 .. 0.84
   3 ?   -2.5   0.0         4   2.9e+02     613     644 ..     372     402 ..     365     405 .. 0.84

  Alignments for each domain:
  == domain 1    score: 29.1 bits;  conditional E-value: 1.1e-09
  TIGR01193 472 gdievndvsysyGygsevledislkikknekitlvGlsGsGkstlakllvkffqaesGeillngks 537
                +  ++ dv +syG g + l+ isl++ +  +++l+G  G Gkstl kl+ +  +a++Ge+++ gk 
  MMETSP1137-20121227|860_1  13 AAFVLRDVYFSYGKGGDTLQAISLNLPQGGRLVLLGANGGGKSTLLKLIAGRRKAREGEVEVLGKP 78 
                567889*****************************************************9986654 PP

  == domain 2    score: 18.2 bits;  conditional E-value: 2.2e-06
  TIGR01193 600 Gyqtel.seeassisgGqkqrlalarallsdskvlildestsnldlltekki 650
                G +++l  ++ s+is+Gq++r+ l  +ll +  +++lde+t  ld+     +
  MMETSP1137-20121227|860_1 132 GIDANLlGSNLSAISSGQRRRVQLLCSLLPERALILLDEATNTLDVRARAAL 183
                6666651556689********************************9766555 PP

  == domain 3    score: -2.5 bits;  conditional E-value: 4
  TIGR01193 613 sgGqkqrlalarallsdskvlildestsnldl 644
                s+  +qrla   + l++s+   ++e t++l  
  MMETSP1137-20121227|860_1 372 SA-MQQRLAACSTALAESDAKTVEEETAQLSA 402
                44.469*********************99976 PP

>> TIGR03740  galliderm_ABC: lantibiotic protection ABC transporter, ATP-binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.8   0.0   4.1e-15   2.9e-13      13     202 ..      28     224 ..      16     232 .. 0.83

  Alignments for each domain:
  == domain 1    score: 47.8 bits;  conditional E-value: 4.1e-15
  TIGR03740  13 qavvnnvslkvkknsvygllGpnGaGkstllklltGllrktsGeilldgre.wtrkdlkkiGsli..esPalyenltarenlk.vrtlllglpesrieevlkivdlent.ekkkakqfslGmkqrlGiaiallnkPkllildePtnGldPlGiqelreliks..fpekGitvilsshilsevelladhiGiiseGkl 202
                 + ++ +sl++++     llG nG Gkstllkl++G  +  +Ge+ + g++ +    l    +l+  e       l  r+ l  v t    l   r   +l+ ++++ +    + +  s G ++r+ +  +ll +  l++lde tn ld      l +++k    +++G tv+l +hi+  ++    h+  ++ G+l
  MMETSP1137-20121227|860_1  28 GDTLQAISLNLPQGGRLVLLGANGGGKSTLLKLIAGRRKAREGEVEVLGKPaFETTALALQVTLVadEWDESICYLPVRKVLSgVCTDSNVLRMPRTARLLRALGIDANlLGSNLSAISSGQRRRVQLLCSLLPERALILLDEATNTLDVRARAALLDFLKEeeCERRGATVVLCTHIFDGLDAWPTHVAHLERGRL 224
                468999***************************************99988724455555433444223345566788899987345556678899*********997551678899******************************************9985227899************99999999999998887 PP

>> TIGR02203  MsbA_lipidA: lipid A export permease/ATP-binding protein MsbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.7   0.4   5.1e-15   3.6e-13     333     514 ..      16     188 ..       2     224 .. 0.78

  Alignments for each domain:
  == domain 1    score: 46.7 bits;  conditional E-value: 5.1e-15
  TIGR02203 333 efrnvtfrypgddrealdsislkveaGevvalvGrsGsGkstlvnllpRFyepdsGeillDgvdladlkLasLRrqvalvsqdvvLFddtiae.nvaYgeleevdeaeveealaaaylkdlvdklpeGldte.vGengskLsGGqRqRlaiaRallkdaPiLiLDeatsaLDneseRlvqaaLe 514
                 +r+v f y+ ++ ++l++isl++ +G ++ l G  G Gkstl++l++   +  +Ge+ + g++  + +   L  qv+lv+ +   +d++i    v+       ++ +v +  ++a l   +     G+d + +G+n s +s GqR R+ +  +ll +  +++LDeat  LD  +  ++ + L+
  MMETSP1137-20121227|860_1  16 VLRDVYFSYG-KGGDTLQAISLNLPQGGRLVLLGANGGGKSTLLKLIAGRRKAREGEVEVLGKPAFETT--ALALQVTLVADE---WDESICYlPVRKVLSGVCTDSNVLRMPRTARL---LR--ALGIDANlLGSNLSAISSGQRRRVQLLCSLLPERALILLDEATNTLDVRARAALLDFLK 188
                4799999996.5779*******************************************99999976654..565677777665...45555431344444444455555555555555...54..469998746**************************************887666666554 PP

>> TIGR02204  MsbA_rel: ABC transporter, permease/ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.6   0.2   1.2e-14   8.5e-13     337     561 ..      14     233 ..       4     245 .. 0.72

  Alignments for each domain:
  == domain 1    score: 45.6 bits;  conditional E-value: 1.2e-14
  TIGR02204 337 eiefeevkfayParpdqkaldgldltvrpGetvalvGPsGaGkstllelllrfydPqsGailldGvdlreldpeelrerlalvpq..dsalfaasvleniryGrpdasdeeveaaakaaeadefisklpeGyd.tllGergvtLsGGqkqriaiarailkdapiLLLdeatsaLdaeseqlvqqaleelmkgr..ttlvi.ahrLatvlka..drivvldkGriveqGthaeL 561
                +  + +v f+y +  d  +l++++l++ +G ++ l G  G Gkstll+l+    + ++G++ + G +  e+    l  ++ lv+   d ++    v++    G    +d +v +  ++a+   ++++l  G d  llG +   +s Gq++r+ +  ++l ++ ++LLdeat+ Ld ++  ++   l+e   +r  +t+v+  h +  + +a   +++ l++Gr+  +   a+L
  MMETSP1137-20121227|860_1  14 AFVLRDVYFSYGKGGD--TLQAISLNLPQGGRLVLLGANGGGKSTLLKLIAGRRKAREGEVEVLGKPAFETT--ALALQVTLVADewDESICYLPVRKV-LSGV--CTDSNVLRMPRTAR---LLRAL--GIDaNLLGSNLSAISSGQRRRVQLLCSLLPERALILLDEATNTLDVRARAALLDFLKEEECERrgATVVLcTHIFDGL-DAwpTHVAHLERGRLLRSLPFASL 233
                5668899999999885..699*********************************************976665..5555666665511667777666654.4454..46777776666554...66776..55514689999***********************************99998888886654443233444413433333.331245555666666665555555 PP

>> TIGR03265  PhnT2: putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.2   1.9   1.8e-13   1.2e-11      19     193 ..      30     204 ..      14     225 .. 0.83

  Alignments for each domain:
  == domain 1    score: 42.2 bits;  conditional E-value: 1.8e-13
  TIGR03265  19 alkdislsvkkgelvclLGPsGCGkttLLriiaGLekqdaGaillggrditrlppqkrdyGivfqsYa.LfPnltvaeniayGLknkklkreevaerveelLelvglsgs.eekyPgqlsGGqqqrvaLaralalsPglLLLDePlsaLDakvrekLreelkklq.rklgvttimvth 193
                +l+ isl++ +g  + lLG  G Gk+tLL++iaG  k+ +G++ + g+   ++++ + +  +v   +      l v++ +  G+ +    +  +  r ++lL  +g++ +      + +s Gq++rv L  +l +   l+LLDe    LD + r+ L   lk+   ++ g t ++ th
  MMETSP1137-20121227|860_1  30 TLQAISLNLPQGGRLVLLGANGGGKSTLLKLIAGRRKAREGEVEVLGKPAFETTALALQVTLVADEWDeSICYLPVRKVL-SGVCTDS--NVLRMPRTARLLRALGIDANlLGSNLSAISSGQRRRVQLLCSLLPERALILLDEATNTLDVRARAALLDFLKEEEcERRGATVVLCTH 204
                7999***********************************************************99885245566666544.4554443..2334456666777777765413456789*****************************************9997643788999999999 PP

>> TIGR00958  3a01208: antigen peptide transporter 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.1   0.0   2.1e-13   1.5e-11     481     707 ..      17     240 ..       5     244 .. 0.78

  Alignments for each domain:
  == domain 1    score: 41.1 bits;  conditional E-value: 2.1e-13
  TIGR00958 481 FqdVsFsYPsrpdkpvlkdLtftlepGevvalVGPsGsGKStvaallenlYqPtgGqvllDgkplkeydhkylhrkvalVgqE...PvlfsgsvreNiaYGltktedeevtaaakaanahdFiselekgydte.vgekGsqlsgGqkqriAiARALvrkPrvLiLDeAtSALDaeveqllqe.....sksaksrtvlliahrLstvek.adkilvlkkgsvvelGthkqLmekedvy 707
                 +dV FsY +  d   l+ ++++l  G    l G +G+GKSt   l+    +  +G+v + gkp   ++   l  +v+lV+ E    + +   vr+ ++     ++d +v    ++a     +     g+d + +g + s +s+Gq+ r+ +   L+ + ++++LDeAt  LD++  ++l +       ++++ tv+l +h          +++ l++g++ +   ++ L   + +y
  MMETSP1137-20121227|860_1  17 LRDVYFSYGKGGD--TLQAISLNLPQGGRLVLLGANGGGKSTLLKLIAGRRKAREGEVEVLGKP--AFETTALALQVTLVADEwdeSICYL-PVRKVLSGV---CTDSNVLRMPRTARL---LR--ALGIDANlLGSNLSAISSGQRRRVQLLCSLLPERALILLDEATNTLDVRARAALLDflkeeECERRGATVVLCTHIFDGLDAwPTHVAHLERGRLLRSLPFASLQPGKSLY 240
                589*****99877..59**********************************************9..588999999*****99822123333.555544433...334444444444433...33..34778773599999**********************************87777655443335567889******9988776525788888888888877777777666666 PP

>> TIGR02324  CP_lyasePhnL: phosphonate C-P lyase system protein PhnL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.0   2.4e-06   0.00017      22      68 ..      29      75 ..      19      93 .. 0.86
   2 !   22.9   0.0   1.5e-07     1e-05     128     207 ..     123     204 ..     107     210 .. 0.89

  Alignments for each domain:
  == domain 1    score: 19.0 bits;  conditional E-value: 2.4e-06
  TIGR02324 22 pvlkevsleveaGelvalsGksGaGkstllkslyanYlpesgrilvr 68
               ++l+ +sl++ +G  ++l G+ G Gkstllk + +  ++  g++ v 
  MMETSP1137-20121227|860_1 29 DTLQAISLNLPQGGRLVLLGANGGGKSTLLKLIAGRRKAREGEVEVL 75
               67899****************************99999999998775 PP

  == domain 2    score: 22.9 bits;  conditional E-value: 1.5e-07
  TIGR02324 128 kakellarlniperLWslaPatfsGGekqRvniaraliadrPiLLLdePtasLdaanrkvvvelikea..kargaaligifh 207
                ++++ll+ l i   L     +  s G ++Rv +  +l+ +r ++LLde t +Ld   r++ ++++ke    +rga+++   h
  MMETSP1137-20121227|860_1 123 RTARLLRALGIDANLLGSNLSAISSGQRRRVQLLCSLLPERALILLDEATNTLDVRARAALLDFLKEEecERRGATVVLCTH 204
                567899999**999999999*********************************************87522678898887766 PP

>> TIGR03797  NHLM_micro_ABC2: NHLM bacteriocin system ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.8   0.1   2.1e-08   1.5e-06     453     514 ..      16      76 ..       4      91 .. 0.89
   2 !   17.0   0.0   4.9e-06   0.00034     586     633 ..     142     189 ..     132     211 .. 0.88

  Alignments for each domain:
  == domain 1    score: 24.8 bits;  conditional E-value: 2.1e-08
  TIGR03797 453 evdrvtFrYekdgplvLddvslkiepGefvaivGaSGsGKStllrlLLgFekPesGsvlyDG 514
                 ++ v F Y k    +L+ +sl+  +G  + + Ga G GKStll+l+ g  k ++G+v   G
  MMETSP1137-20121227|860_1  16 VLRDVYFSYGKG-GDTLQAISLNLPQGGRLVLLGANGGGKSTLLKLIAGRRKAREGEVEVLG 76 
                5789*****765.578**********************************999999997655 PP

  == domain 2    score: 17.0 bits;  conditional E-value: 4.9e-06
  TIGR03797 586 ggtlSGGQrQRlliAralvrkPrillfDEATSALDNrtQaiVseslek 633
                 +++S GQr R+ +  +l     ++l+DEAT  LD r+ a+  + l++
  MMETSP1137-20121227|860_1 142 LSAISSGQRRRVQLLCSLLPERALILLDEATNTLDVRARAALLDFLKE 189
                5789**********************************9998887766 PP

>> TIGR03410  urea_trans_UrtE: urea ABC transporter, ATP-binding protein UrtE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.4   0.0   1.6e-13   1.1e-11       4     214 ..      18     228 ..      15     244 .. 0.87

  Alignments for each domain:
  == domain 1    score: 42.4 bits;  conditional E-value: 1.6e-13
  TIGR03410   4 enlevaYge.sevlrdvslevekgevvavlGrngvGkttllkalvgllkvksGeielegeditklkpeervkaGiayvp.qGreifpkltveenlelglealkkkekkipeeiyelFPvlkemlkRrgGdLsGGqqqqlaiaRaLvtePklllLDePteGiqPsiikeiekvikela.kekdlaillveqvldfaleladrylvlerGevvaeg 214
                +++  +Yg+    l+ +sl++++g  +++lG ng Gk+tllk + g  k+++Ge+e+ g+   ++++ +     ++ v     e++  l v+  l  + + ++  +   +++++    +  ++l  +   +s Gq+  + +  +L+ e  l+lLDe t+ +     + + + +ke + ++++ +++l  + +d   +   +++ lerG+++ + 
  MMETSP1137-20121227|860_1  18 RDVYFSYGKgGDTLQAISLNLPQGGRLVLLGANGGGKSTLLKLIAGRRKAREGEVEVLGKPAFETTALA---LQVTLVAdEWDESICYLPVRKVLSGVCTDSNVLRMPRTARLLRALGIDANLLGSNLSAISSGQRRRVQLLCSLLPERALILLDEATNTLDVRARAALLDFLKEEEcERRGATVVLCTHIFDGLDAWPTHVAHLERGRLLRSL 228
                6778889973589***********************************************987766654...3455555156899*******9999999888888999999**************************************************99888888888877652568999999999999999999999999999988765 PP

>> TIGR03771  anch_rpt_ABC: anchored repeat-type ABC transporter, ATP-binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.7   0.2   1.5e-13   1.1e-11       3     171 ..      38     204 ..      36     226 .. 0.81

  Alignments for each domain:
  == domain 1    score: 42.7 bits;  conditional E-value: 1.5e-13
  TIGR03771   3 vdkGellgllGpnGaGkttllrailglikvakGsvkvagkssrkgrreiGyvpqrhefawdfpidv..eqtvlsGragliGllrrpkkadfaavadalervkl.teladrpvGelsGGqrqrvlvaralavkpslllldepftGldlpsqellvelfee..lagegtailmtth 171
                + +G  l llG nG Gk+tll+ i g  k+++G+v+v gk++ +  +    v       wd  i     + vlsG +    +lr p+ a        l+   + ++l    +  +s Gqr+rv +  +l  +  l+llde    ld+ ++  l+++++e      g +++++th
  MMETSP1137-20121227|860_1  38 LPQGGRLVLLGANGGGKSTLLKLIAGRRKAREGEVEVLGKPAFETTALALQVTL-VADEWDESICYlpVRKVLSGVCTDSNVLRMPRTARL------LRALGIdANLLGSNLSAISSGQRRRVQLLCSLLPERALILLDEATNTLDVRARAALLDFLKEeeCERRGATVVLCTH 204
                56788899*******************************987766543333332.23357777654124679**************98864......3333332578888999*******************************************986215567999*****9 PP

>> TIGR01194  cyc_pep_trnsptr: cyclic peptide transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.5   0.0   7.8e-13   5.5e-11     339     528 ..      17     204 ..       8     210 .. 0.78

  Alignments for each domain:
  == domain 1    score: 39.5 bits;  conditional E-value: 7.8e-13
  TIGR01194 339 lkdvrysykdvessegfalGpidlriasGelvyivGenGcGkstliklllGlyipqeGellldGeavsdesrddyrdlfsavfad......yylfddlvqp...dekkqasldqattylsrleledkvkvedlnystttdlstGqrkrlalvnayleerpvllldewaadqdpafkrvfyeellp.dlkrrGktilvish 528
                l+dv +sy       g +l  i l++ +G  + ++G nG Gkstl+kl+ G  + +eGe+ + G++  + +    +    ++ ad       yl  + v      + +   + ++ + l+ l+++   ++ + n s   ++s Gqr+r+ l+++ l er ++llde +   d   +  + + l   +  rrG t+++ +h
  MMETSP1137-20121227|860_1  17 LRDVYFSYG----KGGDTLQAISLNLPQGGRLVLLGANGGGKSTLLKLIAGRRKAREGEVEVLGKPAFETTALALQ---VTLVADewdesiCYLPVRKVLSgvcTDSNVLRMPRTARLLRALGIDA--NLLGSNLS---AISSGQRRRVQLLCSLLPERALILLDEATNTLDVRARAALLDFLKEeECERRGATVVLCTH 204
                666666663....44567899********9999*********************************9988875544...44444422233345654444320112333344566778899999986..57899999...9*****************************99*99998888777642689********999 PP

>> TIGR01978  sufC: FeS assembly ATPase SufC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.1   0.0   1.6e-08   1.1e-06      15      62 ..      30      75 ..      17      95 .. 0.86
   2 !   14.4   0.0   5.8e-05    0.0041     130     225 ..     131     226 ..     115     232 .. 0.80

  Alignments for each domain:
  == domain 1    score: 26.1 bits;  conditional E-value: 1.6e-08
  TIGR01978 15 iLkglnlevkkGevhaimGpnGsGkstLskvlaghekyevtsGeiklk 62
                L+ ++l++ +G   +++G+nG GkstL k +ag++k +  +Ge+++ 
  MMETSP1137-20121227|860_1 30 TLQAISLNLPQGGRLVLLGANGGGKSTLLKLIAGRRKAR--EGEVEVL 75
               6999******************************98765..6666655 PP

  == domain 2    score: 14.4 bits;  conditional E-value: 5.8e-05
  TIGR01978 130 leldeelleRslneGfsGGekkrneilqlallePklaiLDeiDsGlDvDalkivaegvnklree..ekalliithyerllelikPdvvhvlldGrivk 225
                l +d++ll  +l    s G ++r ++l  +l e  l++LDe+   lDv a  ++ + +++ + e    ++++ th    l++  P++v  l +Gr+++
  MMETSP1137-20121227|860_1 131 LGIDANLLGSNLS-AISSGQRRRVQLLCSLLPERALILLDEATNTLDVRARAALLDFLKEEECErrGATVVLCTHIFDGLDA-WPTHVAHLERGRLLR 226
                5566666666654.57999********9999999***********************9987766225556667887666665.589999999999876 PP

>> TIGR01187  potA: polyamine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.4   0.2   5.4e-13   3.8e-11       1     162 [.      46     207 ..      46     228 .. 0.80

  Alignments for each domain:
  == domain 1    score: 40.4 bits;  conditional E-value: 5.4e-13
  TIGR01187   1 lLGpsGsGkttlLrllaGleeldsGkilldgedvtevpaekrsvnvvfqsya.LfPhmtveenvafgLkmrkvpkaeikervkeaLelvqleefakrkpsqlsGGqrqrvalaravvkkPkiLLlDeplsaLDkkLrdqmqlelkalq.eklGitvvlvthDqe 162
                lLG+ G Gk+tlL+l+aG  +  +G++ + g+   e +a   +v +v  ++     ++ v + ++      +v +  +++r   aL +    ++  ++ s +s Gqr+rv l  ++  +  ++LlDe+   LD + r  +   lk+ + e+ G tvvl th  +
  MMETSP1137-20121227|860_1  46 LLGANGGGKSTLLKLIAGRRKAREGEVEVLGKPAFETTALALQVTLVADEWDeSICYLPVRKVLSGVCTDSNVLRMPRTARLLRALGID--ANLLGSNLSAISSGQRRRVQLLCSLLPERALILLDEATNTLDVRARAALLDFLKEEEcERRGATVVLCTHIFD 207
                8**********************************************987752344555554444444555666667778888888763..2455578999***************************************999997643899*********554 PP

>> TIGR03411  urea_trans_UrtD: urea ABC transporter, ATP-binding protein UrtD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.5   0.0   3.3e-09   2.3e-07      14      64 ..      27      77 ..      14      91 .. 0.85
   2 !   11.2   0.0   0.00064     0.045     127     223 ..     127     227 ..     100     242 .. 0.79

  Alignments for each domain:
  == domain 1    score: 28.5 bits;  conditional E-value: 3.3e-09
  TIGR03411 14 gfkalndlslsveegelrviiGpnGaGkttllDvitGktrpdeGsvlfkgk 64
               g   l+ +sl++ +g   v++G+nG Gk+tll +i+G+ ++ eG+v + gk
  MMETSP1137-20121227|860_1 27 GGDTLQAISLNLPQGGRLVLLGANGGGKSTLLKLIAGRRKAREGEVEVLGK 77
               667899****************************************98776 PP

  == domain 2    score: 11.2 bits;  conditional E-value: 0.00064
  TIGR03411 127 vleligLeek.adkkaglLshGqkqwLeigmllvqepkllllDePvaGmtdeetektaellkela...kersvvvvehDmefvrelaekvtvlheGkvlae 223
                +l+ +g++++   ++ +++s Gq+ ++++   l+ e +l+llDe +  +  + ++   ++lke +   +  +vv+  h  + +++  ++v+ l++G++l  
  MMETSP1137-20121227|860_1 127 LLRALGIDANlLGSNLSAISSGQRRRVQLLCSLLPERALILLDEATNTLDVRARAALLDFLKEEEcerRGATVVLCTHIFDGLDAWPTHVAHLERGRLLRS 227
                55555554431355667899**********************************9999999986511144689999********************99976 PP

>> TIGR01846  type_I_sec_HlyB: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.4   0.2   1.1e-11     8e-10     457     685 ..      16     240 ..       4     245 .. 0.79

  Alignments for each domain:
  == domain 1    score: 35.4 bits;  conditional E-value: 1.1e-11
  TIGR01846 457 efenirfrykedspevlsnlsldikaGeviGivGpsGsGkstltkllqrlyvPekGrvlvdgvdlaladPawlrrqvgvvlqe..nvlfsrsirdnialakPaiseekviaaaklaGahdfiselkqGyetevgekGaalsGGqrqrialaralvanPrilildeatsaldyeseavimrnlre.ic..kgrtviiiahrlstvraa.drilvlekGkivesGkheellakegly 685
                 ++++ f y +   + l+ +sl++++G  + + G  G Gkstl kl+       +G+v v g+     + ++l  qv++v  e  + +    +r+ ++    + ++ ++   a+l  a     +        +g + +a+s Gqr+r+ l  +l+ +  +++ldeat +ld  + a++ + l+e  c  +g tv+  +h ++ + a   ++  le+G+++ s  ++ l   ++ly
  MMETSP1137-20121227|860_1  16 VLRDVYFSYGKG-GDTLQAISLNLPQGGRLVLLGANGGGKSTLLKLIAGRRKAREGEVEVLGKP--AFETTALALQVTLVADEwdESICYLPVRKVLSGVCTDSNVLRMPRTARLLRALGIDAN-------LLGSNLSAISSGQRRRVQLLCSLLPERALILLDEATNTLDVRARAALLDFLKEeECerRGATVVLCTHIFDGLDAWpTHVAHLERGRLLRSLPFASLQPGKSLY 240
                578889999875.5789*******************************************9986..5677888899999986432334445677766666666777777788888777654333.......357777899***************************************9998624533677*******999998742567788888888777777666666655 PP

>> TIGR03258  PhnT: 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.2   0.5     5e-12   3.6e-10      15     201 ..      21     207 ..       8     250 .. 0.77

  Alignments for each domain:
  == domain 1    score: 37.2 bits;  conditional E-value: 5e-12
  TIGR03258  15 rvayg.arvvlddlsleieaGellallGksGsGkttllravaGfvkadGGrllvadrdlthlppykrnlallvqny....alfphlkveenvafGlrarkqskaliaervadalklvql..sdaaarlpaqlsGGqqqrvalaralvvrpdvllldeplsaldaqlrasvveelkalhrelpeltvlyvthdrd 201
                  +yg +   l+ +sl++  G  l llG  G Gk+tll+++aG  ka  G + v ++          +++l+  ++      +p  kv   v       ++++       a  l+ +++  +  +++l   +s Gq++rv l  +l  +  ++llde   +ld + ra++ + lk    e    tv+  th  d
  MMETSP1137-20121227|860_1  21 YFSYGkGGDTLQAISLNLPQGGRLVLLGANGGGKSTLLKLIAGRRKAREGEVEVLGKPAFETTALALQVTLVADEWdesiCYLPVRKVLSGVCTDSNVLRMPR------TARLLRALGIdaNLLGSNLS-AISSGQRRRVQLLCSLLPERALILLDEATNTLDVRARAALLDFLKEEECERRGATVVLCTHIFD 207
                555542456799**********************************************9999999999****9887322245677777777777666666665......44445544441034455554.5899******************************************9999999*******9544 PP

>> TIGR01186  proV: glycine betaine/L-proline transport ATP binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.5   0.0   4.5e-12   3.2e-10       9     191 ..      31     207 ..      25     222 .. 0.87

  Alignments for each domain:
  == domain 1    score: 37.5 bits;  conditional E-value: 4.5e-12
  TIGR01186   9 vndvdleieeGeiiviiGlsGsGkstlvrllnrliePtaGkilidGediaeisdaelrevrrkkiamvi....qkialfPhmtildnislglellkideqerkekalealklvdl.eeyedryPdelsGGmqqrvGlaralaaePdlllmdeafsaldPlirdelqdelvklq.kklqktivfithdld 191
                ++ ++l++ +G  +v++G  G Gkstl++l+       +G++ + G+   e     l      ++++v      +i+ +P + +l  +    ++l++++  r      +l+ +++  +   +    +s G+++rv l+ +l  e  l+l+dea  +ld   r  l d l++ + ++   t+v+ th +d
  MMETSP1137-20121227|860_1  31 LQAISLNLPQGGRLVLLGANGGGKSTLLKLIAGRRKAREGEVEVLGKPAFETTALAL------QVTLVAdewdESICYLPVRKVLSGVCTDSNVLRMPRTAR------LLRALGIdANLLGSNLSAISSGQRRRVQLLCSLLPERALILLDEATNTLDVRARAALLDFLKEEEcERRGATVVLCTHIFD 207
                67899**********************************************999999......3444431112689************99999999887766......66777786788899999******************************************999876256789*******877 PP

>> TIGR02770  nickel_nikD: nickel import ATP-binding protein NikD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.8   0.0     4e-12   2.8e-10       3     207 ..      32     227 ..      30     242 .. 0.85

  Alignments for each domain:
  == domain 1    score: 37.8 bits;  conditional E-value: 4e-12
  TIGR02770   3 qdvnlslkrgkvlalvGesGsGksltalailglldkeltktsGeilldgkelaalalrgreialilqnPrs..afnPlltikeqlletlkaleklskqakelivealeavgLeeaeevlkkypfelsGGmlqRvmialallleaplliaDePttdlDvvvqaevLklleel.rekrglgillithDlgvvaeladevavmekGkiver 207
                q ++l+l +g  l l+G+ G Gks+    +l+l++    + +Ge+ + gk+  +++    +++l+  +  +  ++ P++ + + +     + +++ + ++   ++ l+a g++  +++l +    +s G   Rv +  +ll e +l++ De t  lDv ++a +L+ l+e   e+rg +++l th +  +     +va +e+G+++ +
  MMETSP1137-20121227|860_1  32 QAISLNLPQGGRLVLLGANGGGKST----LLKLIAGRRKAREGEVEVLGKPAFETTALALQVTLVADEWDEsiCYLPVRKVLSGVC----TDSNVLRMPR--TARLLRALGID--ANLLGSNLSAISSGQRRRVQLLCSLLPERALILLDEATNTLDVRARAALLDFLKEEeCERRGATVVLCTHIFDGLDAWPTHVAHLERGRLLRS 227
                7899*******************97....677777788899************************998765226778877655543....3444444455..55688999999..99***************************************************86516899***********999999999999999998765 PP

>> TIGR01184  ntrCD: nitrate ABC transporter, ATP-binding proteins C and D
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.5   0.3   4.5e-11   3.2e-09       1     176 [.      31     207 ..      31     211 .. 0.77

  Alignments for each domain:
  == domain 1    score: 34.5 bits;  conditional E-value: 4.5e-11
  TIGR01184   1 lkdvdleikkgefislighsgcgkstllnliaglekptsgavilegkeitepgpdrmvvfqnysllpwltvrenialavdavlrdlskserreiveehiel...vglrea.adkrpeqlsggmkqrvaiaralsirpklllldepfgaldaltreelqekllk.iveearvtvlmvthdvd 176
                l+ ++l++ +g  + l+g  g gkstll liag  k  +g v + gk   e       +  + +l+         +l v +vl+ + ++ +   +  +  l   +g+ +     + + +s g ++rv +  +l     l+llde   +ld  +r  l + l +  +e + +tv++ th  d
  MMETSP1137-20121227|860_1  31 LQAISLNLPQGGRLVLLGANGGGKSTLLKLIAGRRKAREGEVEVLGKPAFETTA----LALQVTLVADEWDESICYLPVRKVLSGVCTDSNVLRMPRTARLlraLGIDANlLGSNLSAISSGQRRRVQLLCSLLPERALILLDEATNTLDVRARAALLDFLKEeECERRGATVVLCTHIFD 207
                57899***************************************9997666554....33344566555555666778888777766655444443333331003443321346788999************999999*********************998626888999*******776 PP

>> TIGR00972  3a0107s01c2: phosphate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   0.0   9.9e-05     0.007       4      48 ..      17      62 ..      14      90 .. 0.77
   2 !   17.3   0.0   7.1e-06   0.00051     141     221 ..     141     224 ..     127     232 .. 0.82

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 9.9e-05
  TIGR00972  4 vknlklfygeke.alkdvnleikknkvtaliGpsGcGkstllrsln 48
                +++ ++yg+   +l+ ++l++++    +l+G  G Gkstll+ + 
  MMETSP1137-20121227|860_1 17 LRDVYFSYGKGGdTLQAISLNLPQGGRLVLLGANGGGKSTLLKLIA 62
               56778889986449*****************************885 PP

  == domain 2    score: 17.3 bits;  conditional E-value: 7.1e-06
  TIGR00972 141 salsLsGGqqqrlciaralavePevlLlDePtsaLDpiatekieeliqeLkkk...ytivivthnmqqaarvsdktaffleGel 221
                +  ++s Gq++r+ +  +l  e  ++LlDe t  LD  a + + ++++e + +    t+v+ th ++       ++a + +G+l
  MMETSP1137-20121227|860_1 141 NLSAISSGQRRRVQLLCSLLPERALILLDEATNTLDVRARAALLDFLKEEECErrgATVVLCTHIFDGLDAWPTHVAHLERGRL 224
                556799*****************************************9864332359*******87766666666666666655 PP

>> TIGR03005  ectoine_ehuA: ectoine/hydroxyectoine ABC transporter, ATP-binding protein EhuA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.7   0.0   0.00016     0.011      15      62 ..      30      77 ..      18      95 .. 0.89
   2 !   18.3   0.0   3.3e-06   0.00023     126     225 ..     123     224 ..     106     228 .. 0.85

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 0.00016
  TIGR03005 15 vldglelevaaGekvaliGpsGsGkstilrilmtletideGsikvege 62
                l+ ++l++ +G ++ l+G  G Gkst+l+++    +  eG+++v g+
  MMETSP1137-20121227|860_1 30 TLQAISLNLPQGGRLVLLGANGGGKSTLLKLIAGRRKAREGEVEVLGK 77
               689999************************************999776 PP

  == domain 2    score: 18.3 bits;  conditional E-value: 3.3e-06
  TIGR03005 126 ravelldmvGladk.adalpaqlsGGqkqrvaiaralalrpkvllfdevtsaldpelveevlnvlrrl.asetdltmllvthemgfarefadrvlffdkGki 225
                r+ +ll  +G+ +    +  + +s Gq++rv +  +l  +  ++l+de+t +ld +    +l+ l++  ++ +  t++l th +         v  +++G++
  MMETSP1137-20121227|860_1 123 RTARLLRALGIDANlLGSNLSAISSGQRRRVQLLCSLLPERALILLDEATNTLDVRARAALLDFLKEEeCERRGATVVLCTHIFDGLDAWPTHVAHLERGRL 224
                56677777787554146677889******************************************9762666789*******99988888999999999987 PP

>> TIGR02633  xylG: D-xylose ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.9   0.0   1.2e-09   8.6e-08      15     223 ..      29     228 ..      17     248 .. 0.84

  Alignments for each domain:
  == domain 1    score: 28.9 bits;  conditional E-value: 1.2e-09
  TIGR02633  15 kaldnidlklraGeivslcGenGaGkstlmkvlsgvyphGtydGeilfegeelkassirdterkGiviihqeltlvkelsvleniflGneitlkGglmdydam.vlrakellrelkldasnvtrpvsdlGlGqqqlveiakalnkqvrllildepsaslteketeilldiird..lkakgvacvyishkleevkavsdtisvirdGqhvatk 223
                 +l++i+l+l  G  + l G nG Gkstl+k+++g     + +Ge+   g++       +t +  +     ++tlv +       +l     l+G  +d + + + r+ +llr l +da+     +s +  Gq++ v++  +l  +  l++lde + +l  +    lld +++   +++g + v  +h ++ ++a   +++ +  G+ + + 
  MMETSP1137-20121227|860_1  29 DTLQAISLNLPQGGRLVLLGANGGGKSTLLKLIAGRR--KAREGEVEVLGKPA-----FETTA--L---ALQVTLVADEWDESICYLPVRKVLSGVCTDSNVLrMPRTARLLRALGIDANLLGSNLSAISSGQRRRVQLLCSLLPERALILLDEATNTLDVRARAALLDFLKEeeCERRGATVVLCTHIFDGLDAWPTHVAHLERGRLLRSL 228
                57999*****************************975..56789998888774.....33433..3...34679999987777779999999***888888763569***************999******************99999***********************96336899*999*****999999998888888777766555 PP

>> TIGR02323  CP_lyasePhnK: phosphonate C-P lyase system protein PhnK
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0   1.3e-05   0.00092      18      61 ..      31      75 ..      15      97 .. 0.79
   2 !   13.5   0.0   0.00012    0.0082     122     198 ..     123     205 ..     108     230 .. 0.83

  Alignments for each domain:
  == domain 1    score: 16.6 bits;  conditional E-value: 1.3e-05
  TIGR02323 18 gcrvsf.lypGevlgivGesGsGkstllkalaarlladaGevtye 61
                  +s+ l  G  l ++G  G Gkstllk +a+r  a +Gev+  
  MMETSP1137-20121227|860_1 31 LQAISLnLPQGGRLVLLGANGGGKSTLLKLIAGRRKAREGEVEVL 75
               3348886777999****************************9865 PP

  == domain 2    score: 13.5 bits;  conditional E-value: 0.00012
  TIGR02323 122 aaakwlekveidaari..kpaafsGGmqqrlqiarnlvtrprlvfm.eptGGl.vsvqarll..llrglvrelglaviivthl 198
                ++a+ l+ + ida+ +  + +a+s G ++r+q+  +l+ +  l+++ e t  l v  +a ll  l  +     g +v++ th+
  MMETSP1137-20121227|860_1 123 RTARLLRALGIDANLLgsNLSAISSGQRRRVQLLCSLLPERALILLdEATNTLdVRARAALLdfLKEEECERRGATVVLCTHI 205
                6788899999999888777899************************8899998888888888844445556678889999996 PP

>> TIGR00955  3a01204: pigment precursor permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.4   2.3   3.8e-09   2.7e-07      41     224 ..      31     204 ..      17     206 .. 0.78

  Alignments for each domain:
  == domain 1    score: 27.4 bits;  conditional E-value: 3.8e-09
  TIGR00955  41 lknvsGvaksGellAvlGsSGaGKtTLlnalafrsekglkvsgdvllnGekv.eakemraisayvq.qddlfiptltvrehLmfsahlrlkrrltkkekrerveevleelgLrkcadtrigvpgrvkglSgGerkRlalaselltdPilLfcDEPTsGLDsfsaasvvkvLkk..laqkgktviltiH 224
                l+ +s  + +G  l +lG+ G GK+TLl+ +a r+++   ++g+v + G+++ e++ +    + v  + d  i  l vr  L        +   ++  ++ r   +l++lg+      + g   ++ ++S G+r+R+ l + ll +  l+++DE T  LD    a ++  Lk+    ++g tv+l  H
  MMETSP1137-20121227|860_1  31 LQAISLNLPQGGRLVLLGANGGGKSTLLKLIAGRRKA---REGEVEVLGKPAfETTALALQVTLVAdEWDESICYLPVRKVLSGVC---TD---SNVLRMPRTARLLRALGIDA---NLLG--SNLSAISSGQRRRVQLLCSLLPERALILLDEATNTLDVRARAALLDFLKEeeCERRGATVVLCTH 204
                667777888899999******************9976...4467888898762555555555555414577788888887775433...22...234677778899***99863...4667..3578***********************************9999***9996325567788887766 PP

>> TIGR03269  met_CoM_red_A2: methyl coenzyme M reductase system, component A2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.4   0.0   0.00025     0.017      13      59 ..      28      74 ..      17      88 .. 0.76
   2 !   16.3   0.0   8.6e-06   0.00061     426     505 ..     143     223 ..     119     230 .. 0.61

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 0.00025
  TIGR03269 13 levlknisleleeGevlGilGksGaGksvllhllrGldeyeptsGki 59
                  l+ isl+l +G  l +lG  G Gks ll+l+ G  + ++ + ++
  MMETSP1137-20121227|860_1 28 GDTLQAISLNLPQGGRLVLLGANGGGKSTLLKLIAGRRKAREGEVEV 74
               45688888888888888888888888888888888877755554444 PP

  == domain 2    score: 16.3 bits;  conditional E-value: 8.6e-06
  TIGR03269 426 delseGerhrvalaqvlikeprivildeptGtmdpitkvkvaesilkaree.leetfvivshdmdfvlevcdraalmrdGk 505
                + +s+G+r rv l   l+ e  +++lde t t+d  ++ ++ + + +   e  + t v+ +h  d +      +a +  G+
  MMETSP1137-20121227|860_1 143 SAISSGQRRRVQLLCSLLPERALILLDEATNTLDVRARAALLDFLKEEECErRGATVVLCTHIFDGLDAWPTHVAHLERGR 223
                556667777777777777777777777777777766666666665554433134455555555555554444444444444 PP

>> TIGR00957  MRP_assoc_pro: multi drug resistance-associated protein (MRP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.3   0.1   1.4e-08     1e-06     625     821 ..       3     205 ..       1     210 [. 0.78
   2 !    5.3   0.0    0.0077      0.54    1421    1456 ..     144     179 ..     125     243 .. 0.81

  Alignments for each domain:
  == domain 1    score: 24.3 bits;  conditional E-value: 1.4e-08
  TIGR00957 625 errsikdgegnsitvknatftwardepptlngltlsipegalvavvgqvgcgkssllsallaemdkvegkvalkgsvayvpq....qawiqndslrenilf...gkaleekyykavleacalladleilpsgdrteigekgvnlsggqkqrvslaravysdadiyllddplsavdahvakhifekvigpkgllknktrilvthg 821
                er ++ dge+ +  +++  f++ ++   tl++++l++p+g  + ++g  g gks+ll  + +  +  eg+v++ g  a+       q  +  d   e i +    k l      + +      a l    + d   +g +   +s gq++rv l  ++  +  + lld+   ++d      +++ +   +   ++ t +l th 
  MMETSP1137-20121227|860_1   3 ERGQMTDGEAAAFVLRDVYFSYGKGG-DTLQAISLNLPQGGRLVLLGANGGGKSTLLKLIAGRRKAREGEVEVLGKPAFETTalalQVTLVADEWDESICYlpvRKVLSGVCTDSNVLRMPRTARLLRALGIDANLLGSNLSAISSGQRRRVQLLCSLLPERALILLDEATNTLDVRARAALLDFLKEEECERRGATVVLCTHI 205
                788999****************9985.7******************************99999999*********9998655111145555666667766522123333333332222222223333333568888999999999******************************99999999988888888889999998885 PP

  == domain 2    score: 5.3 bits;  conditional E-value: 0.0077
  TIGR00957 1421 nlsvgqrqlvclarallrktkilvldeataavdlet 1456
                  +s gqr+ v l  +ll    +++ldeat ++d+ +
  MMETSP1137-20121227|860_1  144 AISSGQRRRVQLLCSLLPERALILLDEATNTLDVRA 179 
                 356799999999999999999999999999999875 PP

>> TIGR03415  ABC_choXWV_ATP: choline ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.1   1.3e-05   0.00094      41      84 ..      32      75 ..      25      88 .. 0.90
   2 !    9.7   0.0    0.0011     0.079     164     244 ..     144     225 ..     115     230 .. 0.89

  Alignments for each domain:
  == domain 1    score: 16.1 bits;  conditional E-value: 1.3e-05
  TIGR03415 41 adasldveeGeilvlmGlsGsGkssllravnglnpvsrGkvlvk 84
               + +sl++ +G  lvl+G  G Gks+ll+ + g      G+v+v 
  MMETSP1137-20121227|860_1 32 QAISLNLPQGGRLVLLGANGGGKSTLLKLIAGRRKAREGEVEVL 75
               5789****************************999999999985 PP

  == domain 2    score: 9.7 bits;  conditional E-value: 0.0011
  TIGR03415 164 elsGGmqqrvGlarafateadillmdePfsaldPliraklqdellelq.kklkktivfvshdldealklGnriaimegGriv 244
                 +s G ++rv l  ++  e  ++l+de    ld   ra l d l e   ++   t+v+ +h +d      +++a +e Gr++
  MMETSP1137-20121227|860_1 144 AISSGQRRRVQLLCSLLPERALILLDEATNTLDVRARAALLDFLKEEEcERRGATVVLCTHIFDGLDAWPTHVAHLERGRLL 225
                6899**************************************9987652566789******999988999999999999987 PP

>> TIGR01192  chvA: glucan exporter ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.9   0.0   2.2e-08   1.6e-06     335     555 ..      15     232 ..       5     256 .. 0.83

  Alignments for each domain:
  == domain 1    score: 24.9 bits;  conditional E-value: 2.2e-08
  TIGR01192 335 vefrdisfefanssqgvrdvsfeakagqtvaivgptgagkttlinllqrvydpksgqilidgvdiatvtreslrksiatvfqdagllnrsirenirlgredatdeevveaakaaaasdfiekrlkgydtlvgergnrlsggerqrlaiarailknapilvldeatsaldvetearvkdai...dalrknrttfiiahrlstvrea.dlvlfldqgrliekgsfde 555
                  +rd+ f +    + ++ +s++   g  + ++g  g gk+tl+ l+    + ++g++ + g      t  +l+ ++ +   d  +    +r+ ++      td +v+   ++a         l     l+g   + +s g+r+r+ +  ++l +  +++ldeat +ldv + a + d +   ++ r+  t  + +h +  +      v  l++grl+    f  
  MMETSP1137-20121227|860_1  15 FVLRDVYFSYGKGGDTLQAISLNLPQGGRLVLLGANGGGKSTLLKLIAGRRKAREGEVEVLGKPAFETTALALQVTLVADEWDESICYLPVRKVLS---GVCTDSNVLRMPRTARLL----RALGIDANLLGSNLSAISSGQRRRVQLLCSLLPERALILLDEATNTLDVRARAALLDFLkeeECERRGATVVLCTHIFDGLDAWpTHVAHLERGRLLRSLPFAS 232
                55799**********************************************************999999999999999999999999999997665...568999999999998743....3333444689****************************************999887765332566777777777777776654324577777777776666655 PP

>> TIGR01257  rim_protein: rim ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.7   0.0   1.5e-08     1e-06    1957    2146 ..      33     222 ..       2     237 .. 0.74

  Alignments for each domain:
  == domain 1    score: 23.7 bits;  conditional E-value: 1.5e-08
  TIGR01257 1957 rlcvgvrpgecfgllgvngagktttfkmltgdttvtsgdatvagksiltnisdvhqnmgycpqfdaiddlltgrehlylyarlrgvpae.eiekvanws..ikslgls..lyadrlagtysggnkrklstaialigcpplvlldepttgmdpqarrmlwntivs..iiregravvltshsmeecealctrlaimvkg 2146
                  + + +  g  + llg ng gk+t +k+++g      g+  v gk  + + +   q    + ++d          +l +   l gv ++ ++ ++   +  +++lg+   l    l  + s g++r++    +l+    l+llde t  +d +ar  l + +      r g +vvl +h ++  +a  t++a + +g
  MMETSP1137-20121227|860_1   33 AISLNLPQGGRLVLLGANGGGKSTLLKLIAGRRKAREGEVEVLGKPAFETTALALQVTLVADEWDESIC------YLPVRKVLSGVCTDsNVLRMPRTArlLRALGIDanLLGSNL-SAISSGQRRRVQLLCSLLPERALILLDEATNTLDVRARAALLDFLKEeeCERRGATVVLCTHIFDGLDAWPTHVAHLERG 222 
                 55566667788899*******************************998877766665555544443333......45555567777765245555444311566665311333333.4567899999999**************************999998752256777799********999999999988777 PP

>> TIGR01271  CFTR_protein: cystic fibrosis transmembrane conductor regulator (CFTR)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.0   1.5e-06    0.0001     437     583 ..      26     179 ..       2     193 .. 0.74

  Alignments for each domain:
  == domain 1    score: 17.7 bits;  conditional E-value: 1.5e-06
  TIGR01271 437 yvtpvlknislklekgqllavagstgsgkssllmmilgelepsegkikhsgrisfspqvswimpgtikdniifglsydeyrytsvikacqleediallaek.........dktvlgeggitlsggqrarislaravykdadlylldspfsyldvvt 583
                 +   l+ isl+l +g  l + g+ g gks+ll +i g  +  eg +   g+ +f +    +    + d+    ++y   r   v+     + ++  ++           d   lg    ++s gqr r+ l  ++  +  l lld   + ldv +
  MMETSP1137-20121227|860_1  26 KGGDTLQAISLNLPQGGRLVLLGANGGGKSTLLKLIAGRRKAREGEVEVLGKPAFETTALALQVTLVADEWDESICYLPVRK--VLSGVCTDSNVLRMPRTarllralgiDANLLGSNLSAISSGQRRRVQLLCSLLPERALILLDEATNTLDVRA 179
                45568999*******************************************9999988877777788888888888876663..444444444444444331111111226677777778899999999999999999999999999999999976 PP

>> TIGR00630  uvra: excinuclease ABC subunit A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.0      0.03       2.1      11     650 ..      30      58 ..      24      69 .. 0.61
   2 !   12.5   0.0     9e-05    0.0064     804     892 ..     120     207 ..     115     211 .. 0.87

  Alignments for each domain:
  == domain 1    score: 4.2 bits;  conditional E-value: 0.03
  TIGR00630  11 nLknidvelprdklvvitGlsGsGkssLafdtiyaeGqrrYveslsayarqfLgkldkPdvdsieGLsPaisidqkttsknprstvGtvteiydYlrllfarvGkaycpecgekiekqsaeqivdeilelpegkrvillaPvvrerkgefkklleklkkqGfarvrvdgevveleeelklekqkkhtidvvidrlkvkeeerkrlaesvetalklseGlleveledeeesakkeelfskkaaleeaglsleeleprlfsfnsplgaCpeCkGlGvkleldpekivdeeelsleeaaivalkksassyylqilkslaeklgfdldtplkdlseeakkavLyGsdeeveevkrekekekarlkkefeGvleelerryketeseaarealekflsekaCpsCkgtrlkkealavkvegksiadvselsveealeffeellkleeeekkiaeevlkeikerlkfLvdvGLdYLsleraaetlsGGeaqrirlatqiGsgLvGvlYvlDePsiGLhqrDnerLietlkrlrdlGntlivvehDeetireaDyvvdiGPgaGehGGevvasgsleellkkkesltgqYlsgkkkievPkerrkaegkvltlkgakennlkdidvsiplglltvitGvsgsGkstLi 650
                 L+ i+++lp+   +v+ G  G Gks+                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   L+
  MMETSP1137-20121227|860_1  30 TLQAISLNLPQGGRLVLLGANGGGKST-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LL 58 
                355555555555555555555555555...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................54 PP

  == domain 2    score: 12.5 bits;  conditional E-value: 9e-05
  TIGR00630 804 kisrklellvdvGLgYiklGqpattLsGGeaqrvkLakeLskrstgktlyilDePttGLhfdDikkLlevlqr..lvdkGntvvviehnld 892
                ++ r  +ll  +G++   lG +  ++s G  +rv+L   L      ++l +lDe t  L +   + Ll+ l++     +G tvv+  h +d
  MMETSP1137-20121227|860_1 120 RMPRTARLLRALGIDANLLGSNLSAISSGQRRRVQLLCSLLP---ERALILLDEATNTLDVRARAALLDFLKEeeCERRGATVVLCTHIFD 207
                556777899999************************999876...589***********************75227899******999776 PP

>> TIGR00956  3a01205: pleiotropic drug resistance family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.2   0.0    0.0049      0.35      88     112 ..      42      66 ..      10      81 .. 0.76
   2 !    6.9   0.1    0.0029      0.21     896     958 ..     139     203 ..     127     206 .. 0.78

  Alignments for each domain:
  == domain 1    score: 6.2 bits;  conditional E-value: 0.0049
  TIGR00956  88 elvvvLGrPgsGcstlLksiaskte 112
                  +v+LG  g G+stlLk ia++ +
  MMETSP1137-20121227|860_1  42 GRLVLLGANGGGKSTLLKLIAGRRK 66 
                4456778888888888888887655 PP

  == domain 2    score: 6.9 bits;  conditional E-value: 0.0029
  TIGR00956 896 GvpGeGLnveqRkrltigveLvAkPklllFlDePtsGLDsqtawsivkllrk..ladaGqa.ilCt 958
                G   + ++  qR+r+ +   L  +   l+ lDe t  LD ++ ++++ +l++      G + +lCt
  MMETSP1137-20121227|860_1 139 GSNLSAISSGQRRRVQLLCSLLPER-ALILLDEATNTLDVRARAALLDFLKEeeCERRGATvVLCT 203
                5555567788999999999999887.7899******************999622455676624676 PP

>> TIGR00954  3a01203: peroxysomal long chain fatty acyl transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.6   0.0   0.00021     0.015     469     501 ..      31      63 ..      18      79 .. 0.90
   2 ?   -3.0   0.0       5.3   3.8e+02     584     624 ..     145     185 ..     143     191 .. 0.72

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 0.00021
  TIGR00954 469 ieeLsfevksGnhlLiiGPnGcGKsslfRilge 501
                ++ +s+++++G  l+++G nG GKs l +++++
  MMETSP1137-20121227|860_1  31 LQAISLNLPQGGRLVLLGANGGGKSTLLKLIAG 63 
                57899************************9987 PP

  == domain 2    score: -3.0 bits;  conditional E-value: 5.3
  TIGR00954 584 LsgGekqRiamARlfyHkPkfavLDEctsAvsvdvEdklye 624
                +s G++ R+ +   +      ++LDE+t+ + v    +l +
  MMETSP1137-20121227|860_1 145 ISSGQRRRVQLLCSLLPERALILLDEATNTLDVRARAALLD 185
                577777788777766666778899****9988876666655 PP

>> TIGR00611  recf: DNA replication and repair protein RecF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.0      0.29        21      17      43 ..      34      61 ..      30      68 .. 0.74
   2 ?    5.5   0.1     0.025       1.8     293     332 ..     153     192 ..     151     221 .. 0.85
   3 ?   -1.6   0.1       3.6   2.5e+02     273     295 ..     368     390 ..     360     419 .. 0.62

  Alignments for each domain:
  == domain 1    score: 1.9 bits;  conditional E-value: 0.29
  TIGR00611 17 vdlelspgvn.vlvGeNgqGKtnlleai 43
               + l+l +g   vl+G Ng GK  ll+ i
  MMETSP1137-20121227|860_1 34 ISLNLPQGGRlVLLGANGGGKSTLLKLI 61
               555655444449*********9999755 PP

  == domain 2    score: 5.5 bits;  conditional E-value: 0.025
  TIGR00611 293 iellkeekgerpilllDDvaseLDeqrreaLaelleekge 332
                ++ll++   er + llD     LD + r+aL+  l+e+++
  MMETSP1137-20121227|860_1 153 VQLLCSLLPERALILLDEATNTLDVRARAALLDFLKEEEC 192
                67889999999************************99876 PP

  == domain 3    score: -1.6 bits;  conditional E-value: 3.6
  TIGR00611 273 kdfasqgqkkslalaLrlAeiel 295
                ++  s+ q+++ a++  lAe + 
  MMETSP1137-20121227|860_1 368 QNAISAMQQRLAACSTALAESDA 390
                45555566666666666665443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (470 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       230  (0.0560702); expected 82.0 (0.02)
Passed bias filter:                      201  (0.0490005); expected 82.0 (0.02)
Passed Vit filter:                        86  (0.0209654); expected 4.1 (0.001)
Passed Fwd filter:                        58  (0.0141394); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              58  [number of targets reported over threshold]
# CPU time: 1.39u 0.23s 00:00:01.62 Elapsed: 00:00:01.55
# Mc/sec: 400.23
//
Query:       MMETSP1137-20121227|861_1  [L=152]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.6e-45  150.7   0.2    6.9e-45  150.4   0.1    1.1  1  TIGR03627 arch_S9P: archaeal ribosomal protein S9P


Domain annotation for each model (and alignments):
>> TIGR03627  arch_S9P: archaeal ribosomal protein S9P
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  150.4   0.1   1.7e-48   6.9e-45       2     130 .]      16     152 .]      15     152 .] 0.94

  Alignments for each domain:
  == domain 1    score: 150.4 bits;  conditional E-value: 1.7e-48
  TIGR03627   2 vitsgkrktaiaravireGkGrvrinkvpvelieielarlkilePlllae.dvakevDidvkvsGGGimgqaeaartaiarglveftg.......dkelkdaflayDrtllvnDvrrkepkklggkgarakrqksYr 130
                v+t g++kta+a ++ ++G+G ++in+ p+el+e+e++r k+ eP+ll++ +   +vDi ++v+GGG+++q  a+r+aia+++v++ +        +e+kd+ ++yDr+llv D+rr epkk+gg gara+rqksYr
  MMETSP1137-20121227|861_1  16 VQTFGRKKTAVAVSYCKKGRGLIKINGCPIELVEPEILRYKVFEPILLLGrERFANVDIRIRVKGGGYTSQIYAIRQAIAKSVVAYYQkyvdeasKREIKDILTSYDRSLLVADPRRCEPKKFGGPGARARRQKSYR 152
                7899********************************************999*********************************99763332222479**************************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (152 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       127  (0.0309605); expected 82.0 (0.02)
Passed bias filter:                      118  (0.0287665); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.18u 0.13s 00:00:00.31 Elapsed: 00:00:00.31
# Mc/sec: 647.17
//
Query:       MMETSP1137-20121227|862_1  [L=211]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (211 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       109  (0.0265724); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.18s 00:00:00.38 Elapsed: 00:00:00.94
# Mc/sec: 296.27
//
Query:       MMETSP1137-20121227|864_1  [L=246]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (246 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        65  (0.0158459); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.16s 00:00:00.40 Elapsed: 00:00:00.37
# Mc/sec: 877.55
//
Query:       MMETSP1137-20121227|865_1  [L=226]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (226 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       132  (0.0321794); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.14s 00:00:00.35 Elapsed: 00:00:00.35
# Mc/sec: 852.27
//
Query:       MMETSP1137-20121227|867_1  [L=261]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (261 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        69  (0.0168211); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.13s 00:00:00.36 Elapsed: 00:00:00.37
# Mc/sec: 931.06
//
Query:       MMETSP1137-20121227|868_1  [L=460]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (460 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        77  (0.0187713); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.18s 00:00:00.50 Elapsed: 00:00:00.34
# Mc/sec: 1785.73
//
Query:       MMETSP1137-20121227|869_1  [L=305]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (305 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        97  (0.023647); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.16s 00:00:00.42 Elapsed: 00:00:00.27
# Mc/sec: 1490.99
//
Query:       MMETSP1137-20121227|870_1  [L=586]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (586 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       217  (0.052901); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.19s 00:00:00.60 Elapsed: 00:00:00.53
# Mc/sec: 1459.35
//
Query:       MMETSP1137-20121227|871_1  [L=215]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (215 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        38  (0.00926377); expected 82.0 (0.02)
Passed bias filter:                       37  (0.00901999); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.15s 00:00:00.35 Elapsed: 00:00:00.31
# Mc/sec: 915.41
//
Query:       MMETSP1137-20121227|872_1  [L=224]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.3e-18   61.6   0.0      9e-18   61.3   0.0    1.1  1  TIGR03903 TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
    1.9e-05   22.1   0.0    2.8e-05   21.5   0.0    1.1  1  TIGR03724 arch_bud32: Kae1-associated kinase Bud32
  ------ inclusion threshold ------
      0.013   11.9   0.0      0.019   11.4   0.0    1.1  1  TIGR01982 UbiB: 2-polyprenylphenol 6-hydroxylase


Domain annotation for each model (and alignments):
>> TIGR03903  TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.3   0.0   6.6e-21     9e-18      86     181 ..       3      88 ..       1     102 [. 0.91

  Alignments for each domain:
  == domain 1    score: 61.3 bits;  conditional E-value: 6.6e-21
  TIGR03903  86 lqvLDalaaahdaGvvhRDLkPqnimvsaadveshakvLDFGigaLlpgvedadeatltrttevlGsPaYaaPeqLRgepvtaksDlYaWGLivle 181
                lqvL al   h+ G+vhRDLkP ni++ +++    ak+ DFGi+  l +       t  +++ ++G+ aY aPe L g    ++sD+++ G+i+++
  MMETSP1137-20121227|872_1   3 LQVLCALQYLHRIGIVHRDLKPANILLDTSG---YAKLADFGISKQLED-------TFGLAKSFVGTAAYMAPERLHGQNYSTASDVWSLGMIIFD 88 
                8**************************8877...69999****987765.......5568899******************************976 PP

>> TIGR03724  arch_bud32: Kae1-associated kinase Bud32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.5   0.0     2e-08   2.8e-05     103     140 ..       9      47 ..       4      58 .. 0.85

  Alignments for each domain:
  == domain 1    score: 21.5 bits;  conditional E-value: 2e-08
  TIGR03724 103 vgklHkagivhgDlttsNiiv.kddklyliDfGLgkksk 140
                +  lH+ givh Dl ++Ni++ +++ + l DfG++k+ +
  MMETSP1137-20121227|872_1   9 LQYLHRIGIVHRDLKPANILLdTSGYAKLADFGISKQLE 47 
                5679*****************5577788*******9865 PP

>> TIGR01982  UbiB: 2-polyprenylphenol 6-hydroxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   1.4e-05     0.019     270     320 ..      10      58 ..       3      64 .. 0.82

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 1.4e-05
  TIGR01982 270 kqvlrdgfFHaDlHpGNilvakdgkiialDfGivgrlseeerrylaeillg 320
                +   r g+ H Dl p Nil+++ g   + DfGi  +l++     la++++g
  MMETSP1137-20121227|872_1  10 QYLHRIGIVHRDLKPANILLDTSGYAKLADFGISKQLED--TFGLAKSFVG 58 
                45668899*************************999964..5566666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (224 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        72  (0.0175524); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.20u 0.14s 00:00:00.34 Elapsed: 00:00:00.36
# Mc/sec: 821.27
//
Query:       MMETSP1137-20121227|873_1  [L=533]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.7e-06   25.6   0.1    2.6e-06   25.0   0.1    1.2  1  TIGR01761 thiaz-red: thiazolinyl imide reductase
  ------ inclusion threshold ------
      0.015   12.4   0.0      0.023   11.8   0.0    1.2  1  TIGR03215 ac_ald_DH_ac: acetaldehyde dehydrogenase (acetylating)


Domain annotation for each model (and alignments):
>> TIGR01761  thiaz-red: thiazolinyl imide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.0   0.1   1.3e-09   2.6e-06      30     129 ..     142     247 ..     124     258 .. 0.72

  Alignments for each domain:
  == domain 1    score: 25.0 bits;  conditional E-value: 1.3e-09
  TIGR01761  30 eLaGlLaqGseRsRaLAealGvpl...ysevdelpddidlACvvvrsaivGgkGselaralleRGidvlqEHPllpediaellrlAe.rqGrrylvnt.....fYPhlp 129
                + aG L + s+Rs a A+ + +pl   y + +el++d  +  v + ++   +k  ela+ +l+ G +vl E P +   +ae  +lA+  + rr l+ t     f+P ++
  MMETSP1137-20121227|873_1 142 VAAGSLPNASARSQAFARLYNIPLahaYGHYEELAADDSVTMVYIATT--NQKHYELAKLFLQHGKHVLLEKPATI-GVAEFEELAAlSRARRLLLVTnfwtrFFPAVK 247
                55788999***************97778899*********99999776..57899******************765.45555555542233333332211222444444 PP

>> TIGR03215  ac_ald_DH_ac: acetaldehyde dehydrogenase (acetylating)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   1.1e-05     0.023       5     101 ..     117     217 ..     113     229 .. 0.79

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 1.1e-05
  TIGR03215   5 aiiGsGnigtdllikllr.sev...lelallvGidpesdGlararelgvetsaeGvdalleeedidivfdatsakahaenaklleelgkividltPaavGp 101
                +i+G+G i+ d+       +     +    l    ++s+ +ar  ++ ++ +    + l +++++++v+ at+ + h e akl+ ++gk+v+   Pa++G 
  MMETSP1137-20121227|873_1 117 GIVGPGRIAHDFAAAAYGlGARlcgVAAGSLPNASARSQAFARLYNIPLAHAYGHYEELAADDSVTMVYIATTNQKHYELAKLFLQHGKHVLLEKPATIGV 217
                588888888888777665322200023333444566788888888888888888999***********************************99****995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (533 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       122  (0.0297416); expected 82.0 (0.02)
Passed bias filter:                      105  (0.0255973); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.14s 00:00:00.55 Elapsed: 00:00:00.51
# Mc/sec: 1379.42
//
Query:       MMETSP1137-20121227|874_1  [L=294]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (294 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        53  (0.0129205); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.15s 00:00:00.38 Elapsed: 00:00:00.51
# Mc/sec: 760.88
//
Query:       MMETSP1137-20121227|875_1  [L=281]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (281 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       131  (0.0319356); expected 82.0 (0.02)
Passed bias filter:                       98  (0.0238908); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.17s 00:00:00.42 Elapsed: 00:00:00.33
# Mc/sec: 1123.91
//
Query:       MMETSP1137-20121227|876_1  [L=78]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (78 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        61  (0.0148708); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.31
# Mc/sec: 332.10
//
Query:       MMETSP1137-20121227|877_1  [L=452]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (452 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.16s 00:00:00.48 Elapsed: 00:00:00.39
# Mc/sec: 1529.72
//
Query:       MMETSP1137-20121227|878_1  [L=660]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.44    8.3  11.6      0.073   10.9   4.1    2.1  2  TIGR03499 FlhF: flagellar biosynthesis protein FlhF


Domain annotation for each model (and alignments):
>> TIGR03499  FlhF: flagellar biosynthesis protein FlhF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   4.1   1.8e-05     0.073      59     166 ..      88     204 ..      62     232 .. 0.64
   2 ?   -0.0   0.2     0.037   1.5e+02      40     101 ..     461     523 ..     446     557 .. 0.53

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 1.8e-05
  TIGR03499  59 aaseeeeakkaleeaepkklskaeekeekekeaeekaaeaaqeaekkleeae.........eelrkelkalkellekqlselaleeedperakllkklleagvseelarelleklke 166
                aa+++++ ++++++++ +++++a++++++++  + +aa++a++++k++ +++              +++a + + +   ++ a++e+ + ++++l+ l ++g++++ a++ l+++  
  MMETSP1137-20121227|878_1  88 AARQAPPQQAQQQQQSRAPNPQAAAAANAAAARAAAAARPASARTKMTVTSAqpkptadtaTGTATDVAAGRGAATVARAAPAQSESAHAFSEALQALCSMGFDATRAQAALQRTGG 204
                223333333333333333333333333333333333333333333333333356666666699999999999999999888877*************************99999876 PP

  == domain 2    score: -0.0 bits;  conditional E-value: 0.037
  TIGR03499  40 fskkkvevvaaideee..............sasaaseeeeakkaleeaepkklskaeekeekekeaeekaaeaaqe 101
                ++ ++++v+ a+++++              +             +eea++  ++++++++++++  +++++ea+++
  MMETSP1137-20121227|878_1 461 LGPSNIKVMHAAENNAaprtedlpadffslT-------------AEEARSLVAAAQARRAADSTLRTRETREAEAA 523
                5667788888888888444433333333221.............22222222222222222222222222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (660 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       222  (0.0541199); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.17s 00:00:00.66 Elapsed: 00:00:00.64
# Mc/sec: 1361.14
//
Query:       MMETSP1137-20121227|880_1  [L=130]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (130 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       173  (0.0421745); expected 82.0 (0.02)
Passed bias filter:                      147  (0.0358362); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.17s 00:00:00.34 Elapsed: 00:00:00.33
# Mc/sec: 519.96
//
Query:       MMETSP1137-20121227|881_1  [L=349]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.4e-13   47.3   0.0    3.2e-13   46.9   0.0    1.1  1  TIGR00204 dxs: 1-deoxy-D-xylulose-5-phosphate synthase
    3.1e-05   20.6   0.0    4.3e-05   20.1   0.0    1.1  1  TIGR03710 OAFO_sf: 2-oxoacid:acceptor oxidoreductase, alpha subunit


Domain annotation for each model (and alignments):
>> TIGR00204  dxs: 1-deoxy-D-xylulose-5-phosphate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.9   0.0   1.6e-16   3.2e-13     352     571 ..      75     304 ..      62     323 .. 0.78

  Alignments for each domain:
  == domain 1    score: 46.9 bits;  conditional E-value: 1.6e-16
  TIGR00204 352 kryfdvaiaeqhavtlaaalaieGlkPvvai.ystflqraydqvvhdvaiqklpvllaidraGi........vGadGethqGlfdisylrsiPnlvlmaPkdenelkqmlvtaleydegpialryPrG...navgvelteeekleiGksellrkgedilllgfGtlveealevaeelkekgieatvvdlrfvkPldeelikalakeieklvtleenvllGGvgsavaevlsd 571
                +r++++ i eq  v +  +l+  G   +  + ++ ++  a dq+  ++a  +       d  G+        vG  G+ h      +y+ + P l ++ P+d  ++k +l   ++ d +p+ +  P+    ++v    t + +l++Gk+e+lr+g di  +++G+ v++ l++ ++ + +gi++  +dl  + P d + i+  ++++ +l++ +e+ l+ G+g+ +a  +++
  MMETSP1137-20121227|881_1  75 ERVLNMPINEQGLVGFGIGLSAVGGTAIAEVqFADYIFPAMDQICNEAAKFRYRSGSEFDVGGLtirapanaVGHGGHYHSQSP-EAYFAHTPGLKVVYPRDAYTAKGLLLSCIR-DRNPCLFFEPKVlyrSSVCEVPTGDFELPLGKAEILREGSDITCVAWGAQVHTMLKACDRAEADGISVEAIDLATIAPWDMHTIRDSVEKTGRLLVTHEAPLTAGFGAEIAASIQE 304
                577888888888888888886666666655437888889999999988876655544444444321211111677776665544.59*******************999987776.669999988874221333333344578*********************************************************************************99987766 PP

>> TIGR03710  OAFO_sf: 2-oxoacid:acceptor oxidoreductase, alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.0   2.1e-08   4.3e-05     462     519 ..     226     284 ..     217     301 .. 0.91

  Alignments for each domain:
  == domain 1    score: 20.1 bits;  conditional E-value: 2.1e-08
  TIGR03710 462 edadvlvigwGstkgaikeaverlreeglkvallhlrllnPlpke.laellekakkvvv 519
                e +d++ ++wG + +++ +a++r++++g++v+++ l  ++P   + +++ +ek  +++v
  MMETSP1137-20121227|881_1 226 EGSDITCVAWGAQVHTMLKACDRAEADGISVEAIDLATIAPWDMHtIRDSVEKTGRLLV 284
                568999*************************************9999999999988877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (349 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        87  (0.0212092); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.29u 0.14s 00:00:00.43 Elapsed: 00:00:00.35
# Mc/sec: 1316.12
//
Query:       MMETSP1137-20121227|882_1  [L=196]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (196 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        91  (0.0221843); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.16s 00:00:00.35 Elapsed: 00:00:00.32
# Mc/sec: 808.43
//
Query:       MMETSP1137-20121227|883_1  [L=202]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (202 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       125  (0.0304729); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.15s 00:00:00.37 Elapsed: 00:00:00.32
# Mc/sec: 833.18
//
Query:       MMETSP1137-20121227|884_1  [L=293]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.3e-23   79.1   0.0      9e-23   78.6   0.0    1.2  1  TIGR02540 gpx7: putative glutathione peroxidase Gpx7


Domain annotation for each model (and alignments):
>> TIGR02540  gpx7: putative glutathione peroxidase Gpx7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.6   0.0   2.2e-26     9e-23       8     131 ..     133     264 ..     127     286 .. 0.83

  Alignments for each domain:
  == domain 1    score: 78.6 bits;  conditional E-value: 2.2e-26
  TIGR02540   8 kdikgrlvslekyrgkvslvvnvaseceftdknyralqelqrelgpshfnvlafpcnqfgesepksskeiesfarknygv...tfpifskikilgseaepafrflvdsskkepr.....wnfwkylvdpegk 131
                  i g+l sl  +r +++lvvnvas+  + + ny  l+ l  ++ +s f+vlafp nqfg + p ss+   +++ ++ +    +fp f+k+ + g++a  ++  l  ++k + +     wn+ k+lvd +g 
  MMETSP1137-20121227|884_1 133 ASISGKLTSLANFRSRAALVVNVASDEALQNVNYAGLKTLLEKYNQSGFQVLAFPSNQFGAQAPCSSECERAYIYHKLNLpfgAFPTFDKVVVNGPGALETYAVLKAAAKGHDTgfdimWNYEKFLVDADGI 264
                5689************************************************************998877777766655422379*******************998877654233333**********994 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (293 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        71  (0.0173086); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.23u 0.15s 00:00:00.38 Elapsed: 00:00:00.38
# Mc/sec: 1017.71
//
Query:       MMETSP1137-20121227|886_1  [L=142]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (142 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        62  (0.0151146); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.15s 00:00:00.31 Elapsed: 00:00:00.32
# Mc/sec: 585.70
//
Query:       MMETSP1137-20121227|887_1  [L=149]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.01   12.8   0.0      0.011   12.7   0.0    1.0  1  TIGR01756 LDH_protist: lactate dehydrogenase


Domain annotation for each model (and alignments):
>> TIGR01756  LDH_protist: lactate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   2.7e-06     0.011     112     210 ..       5     106 ..       3     134 .. 0.82

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 2.7e-06
  TIGR01756 112 pvntnalvamlhakklseenfssllmldqnravseiasklkvevdeirdvvvwGnhaesm.vadlthaevtkdGkkqkv..idelskdyakdeflkkiaqra 210
                p    al+   +a+ ls+  f +ll        + +as+lkv+++    +  w  +  +m   ++++a + ++   + v  +d  ++ ya  +fl     ra
  MMETSP1137-20121227|887_1   5 PSSVAALLXKAQAPLLSAASFAALLPAGFCDESQVVASRLKVPIEAALRLLAWPRKRGCMdWEGMADAGFKRNEAMKLVlsLDRCTRAYAMRTFLGARLARA 106
                55666777788999***************************************988777636899*****99888777622588999999999997766665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (149 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        54  (0.0131643); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.17u 0.17s 00:00:00.34 Elapsed: 00:00:00.31
# Mc/sec: 634.40
//
Query:       MMETSP1137-20121227|888_1  [L=339]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (339 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        63  (0.0153584); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.16s 00:00:00.42 Elapsed: 00:00:00.51
# Mc/sec: 877.34
//
Query:       MMETSP1137-20121227|890_1  [L=80]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (80 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        47  (0.0114578); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.15s 00:00:00.27 Elapsed: 00:00:00.34
# Mc/sec: 310.56
//
Query:       MMETSP1137-20121227|891_1  [L=377]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (377 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        57  (0.0138957); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.14s 00:00:00.41 Elapsed: 00:00:00.48
# Mc/sec: 1036.66
//
Query:       MMETSP1137-20121227|892_1  [L=257]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (257 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        94  (0.0229157); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.14s 00:00:00.36 Elapsed: 00:00:01.04
# Mc/sec: 326.17
//
Query:       MMETSP1137-20121227|893_1  [L=316]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0053   14.1   0.0     0.0078   13.5   0.0    1.2  1  TIGR01840 esterase_phb: esterase, PHB depolymerase family


Domain annotation for each model (and alignments):
>> TIGR01840  esterase_phb: esterase, PHB depolymerase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   0.0   1.9e-06    0.0078      76     135 ..     126     186 ..      85     201 .. 0.81

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 1.9e-06
  TIGR01840  76 veslkqlidavkanysIDpnrvyvtGLSaGgget.aVllatypdvfAgaAsnaglpygsas 135
                 + l  l + + +ny +Dp ++ v+G   Gg  + +++   yp v A+aA   + +  +a+
  MMETSP1137-20121227|893_1 126 HRLLARLFEVFIDNYPVDPTKISVSGYCFGGQAVlEIVRRGYPGVVAAAAFHPSTTNLTAT 186
                4456666677777***************9997653788999*******9988877766555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (316 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        73  (0.0177962); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.25u 0.17s 00:00:00.42 Elapsed: 00:00:00.45
# Mc/sec: 926.86
//
Query:       MMETSP1137-20121227|894_1  [L=65]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (65 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        62  (0.0151146); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.25
# Mc/sec: 343.17
//
Query:       MMETSP1137-20121227|895_1  [L=204]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      1e-19   68.8   0.0    1.4e-19   68.4   0.0    1.2  1  TIGR01349 PDHac_trf_mito: pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase
    7.9e-05   19.8   0.0    0.00011   19.3   0.0    1.2  1  TIGR01347 sucB: dihydrolipoyllysine-residue succinyltransferase, E2 component of oxoglutarate dehydrogenase (succinyl-transferring) complex
      0.009   12.6   0.1     0.0099   12.5   0.0    1.2  1  TIGR02927 SucB_Actino: 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase


Domain annotation for each model (and alignments):
>> TIGR01349  PDHac_trf_mito: pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.4   0.0     1e-22   1.4e-19       2      94 ..      83     181 ..      82     201 .. 0.84

  Alignments for each domain:
  == domain 1    score: 68.4 bits;  conditional E-value: 1e-22
  TIGR01349   2 ikmPaLsPtmeeGnlakwkkkeGDkvkeGdviaeiet......DkA..tldvesqeegylakilvpegtkdvpvnkliavlveekedvedavknyklessa 94 
                + mP LsPtme+G++ kw +++G+++k+ d+++++ t      D+    ++ve +e+g+lak lvp+g + vp +++ia++ e++edv+ a+++++++ + 
  MMETSP1137-20121227|895_1  83 MPMPRLSPTMENGTIDKWLVQQGEEIKACDLVCNVRTnqlledDQSefIMEVEVHEDGWLAKTLVPKGGNAVP-DQPIAIICEKPEDVD-AFADFDPSVEE 181
                58*********************************993333323333369********************999.89************9.99999877654 PP

>> TIGR01347  sucB: dihydrolipoyllysine-residue succinyltransferase, E2 component of oxoglutarate dehydrogenase (succinyl-transferring) complex
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.0   8.3e-08   0.00011       5      80 ..      85     168 ..      81     195 .. 0.82

  Alignments for each domain:
  == domain 1    score: 19.3 bits;  conditional E-value: 8.3e-08
  TIGR01347   5 vPelaesvteatvaewekkvGdavkkdeliveletDkv........slevaseadGvleellekegdtvesgevlaeleessaa 80 
                +P+l+  + ++t+ +w  + G+ +k  +l++++ t+++         +ev+ ++dG l++ l+ +g   + ++ +a++ e+ + 
  MMETSP1137-20121227|895_1  85 MPRLSPTMENGTIDKWLVQQGEEIKACDLVCNVRTNQLleddqsefIMEVEVHEDGWLAKTLVPKGGNAVPDQPIAIICEKPED 168
                699999**************************9886542222222269******************************985433 PP

>> TIGR02927  SucB_Actino: 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.5   0.0   7.2e-06    0.0099     130     227 ..      84     177 ..      46     199 .. 0.73

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 7.2e-06
  TIGR02927 130 empelGesvteGtvtrwlkavGdtvevdepllevstdkvdteipspvaGtlleilaeeddtvevGavlakiGddagaedepkeeekpekseakseekp 227
                 mp l  ++ +Gt+ +wl + G+++++ + + +v t+++        +  ++e+ ++ed  +   + + k G++ + +      ekpe+ +a ++  p
  MMETSP1137-20121227|895_1  84 PMPRLSPTMENGTIDKWLVQQGEEIKACDLVCNVRTNQLL---EDDQSEFIMEVEVHEDGWLA-KTLVPKGGNAVPDQPIAIICEKPEDVDAFADFDP 177
                4778888888888888888888888888888888887764...34556677777777776654.4555566655555555555566665555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (204 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       109  (0.0265724); expected 82.0 (0.02)
Passed bias filter:                      102  (0.0248659); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.21u 0.14s 00:00:00.35 Elapsed: 00:00:00.32
# Mc/sec: 841.43
//
Query:       MMETSP1137-20121227|896_1  [L=284]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      3e-69  231.5   0.0    6.1e-69  230.5   0.0    1.4  1  TIGR03138 QueF: queuine synthase
    1.2e-15   55.2   0.0    0.00011   20.0   0.0    3.2  3  TIGR03139 QueF-II: 7-cyano-7-deazaguanine reductase


Domain annotation for each model (and alignments):
>> TIGR03138  QueF: queuine synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  230.5   0.0     3e-72   6.1e-69       4     263 ..       6     263 ..       3     269 .. 0.87

  Alignments for each domain:
  == domain 1    score: 230.5 bits;  conditional E-value: 3e-72
  TIGR03138   4 ekseLgkkteykeeYdpslLfpipRslkreelgl...eeeklpfaGvDlWnayelsWLnkkgkpqvaiaeleipaespnlieskslklYlnslnqtrfesaeevkkllekDlskaagaev..kvellsldelaeleiaelegeciDd...ldieideyepdasllktes..se..eeveetlvshLLksnClvtgqPDWasvvikyrgkkidrealLkYlvsfRqhneFheqCverifadilkalqpekLtvyarytRRGGlDinPlRssee 263
                + ++Lgk+++ +e Yd+ lL+p+pR+  r+ l+l   ++e+lpf G+D+Wn+ye sWL+k+g p+  i e++i++ +pnl+eskslklYlnsln++rfes e   +++  Dl k++g     +v++ls++    + ++ ++ +c+Dd   ld e+ +++ d s+l+t+   s+  + v+e+lvshLL++ C+vtgqPDW+sv ++yrg +i  +a          + +Fhe+Cve +f  il++++pe+L v+ r+ RRGG+DinP+R + +
  MMETSP1137-20121227|896_1   6 HAAPLGKQSNTPEVYDAGLLYPVPRAIGRKLLKLedkQAEELPFLGEDVWNCYEASWLDKNGWPNRVILEVRISCYTPNLVESKSLKLYLNSLNFHRFESSEVAIATICADLHKTVGGAEppSVTILSVE---PALLTPKAWICVDDcfgLDTEL-AFDCDDSVLSTQMptSDgpNVVTERLVSHLLRTLCPVTGQPDWGSVLLEYRGPAIAAQA----------CXGFHENCVELLFLAILRRCEPEALRVTGRFLRRGGIDINPVRCTPN 263
                5679****************************9954456789*************************************************************************997551166666665...5666677889999976645544.556666666665422223489*********************************98876..........78*****************************************9865 PP

>> TIGR03139  QueF-II: 7-cyano-7-deazaguanine reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0   6.3e-07    0.0013      47      87 ..      82     121 ..      64     134 .. 0.78
   2 !   15.2   0.0   1.5e-06    0.0031      29      46 ..     190     207 ..     178     217 .. 0.89
   3 !   20.0   0.0   5.1e-08   0.00011      70     109 ..     219     258 ..     213     264 .. 0.92

  Alignments for each domain:
  == domain 1    score: 16.5 bits;  conditional E-value: 6.3e-07
  TIGR03139  47 vPdqklvelkslklyllsfrneg.afheevtnkilddlvkll 87 
                 P  +lve+kslklyl+s   +  +  e  + +i  dl+k++
  MMETSP1137-20121227|896_1  82 TP--NLVESKSLKLYLNSLNFHRfESSEVAIATICADLHKTV 121
                45..48***********99766526778889*******9987 PP

  == domain 2    score: 15.2 bits;  conditional E-value: 1.5e-06
  TIGR03139  29 slCPktgqPDfativieY 46 
                +lCP+tgqPD++ +++eY
  MMETSP1137-20121227|896_1 190 TLCPVTGQPDWGSVLLEY 207
                79**************99 PP

  == domain 3    score: 20.0 bits;  conditional E-value: 5.1e-08
  TIGR03139  70 afheevtnkilddlvkllePrklevigkftarGgiktkvv 109
                 fhe++++ ++  + +  eP+ l+v+g+f  rGgi ++ v
  MMETSP1137-20121227|896_1 219 GFHENCVELLFLAILRRCEPEALRVTGRFLRRGGIDINPV 258
                59*********************************99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (284 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        28  (0.00682594); expected 82.0 (0.02)
Passed bias filter:                       28  (0.00682594); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.24u 0.15s 00:00:00.39 Elapsed: 00:00:00.55
# Mc/sec: 681.54
//
Query:       MMETSP1137-20121227|897_1  [L=428]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (428 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       123  (0.0299854); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.14s 00:00:00.45 Elapsed: 00:00:00.62
# Mc/sec: 911.15
//
Query:       MMETSP1137-20121227|898_1  [L=212]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (212 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       140  (0.0341297); expected 82.0 (0.02)
Passed bias filter:                      119  (0.0290102); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.14s 00:00:00.33 Elapsed: 00:00:00.40
# Mc/sec: 699.54
//
Query:       MMETSP1137-20121227|900_1  [L=635]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.9e-36  123.3   0.4    4.7e-35  118.8   0.1    2.0  2  TIGR02956 TMAO_torS: TMAO reductase sytem sensor TorS
    1.1e-22   78.3   0.0    1.6e-22   77.8   0.0    1.2  1  TIGR02966 phoR_proteo: phosphate regulon sensor kinase PhoR
    2.4e-15   54.0   0.0    3.5e-15   53.4   0.0    1.2  1  TIGR02916 PEP_his_kin: putative PEP-CTERM system histidine kinase
    4.3e-09   33.7   0.3    8.7e-09   32.7   0.0    1.6  2  TIGR01386 cztS_silS_copS: heavy metal sensor kinase
    0.00092   16.4   0.0     0.0014   15.8   0.0    1.2  1  TIGR02154 PhoB: phosphate regulon transcriptional regulatory protein PhoB
     0.0063   12.9   0.1     0.0094   12.3   0.0    1.2  1  TIGR02938 nifL_nitrog: nitrogen fixation negative regulator NifL


Domain annotation for each model (and alignments):
>> TIGR02956  TMAO_torS: TMAO reductase sytem sensor TorS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  118.8   0.1   6.9e-38   4.7e-35     467     685 ..      61     280 ..      52     290 .. 0.89
   2 !    2.6   0.0    0.0084       5.8     687     754 ..     487     559 ..     480     608 .. 0.75

  Alignments for each domain:
  == domain 1    score: 118.8 bits;  conditional E-value: 6.9e-38
  TIGR02956 467 FLAtmSHEiRTPlnGvlGTleLLadtkLtseq...qkylqvinrSGesLldiLnDiLDySkiEaGhlsiserafdlskLledvlhlmesraqekgiqLsleidedlpevlqgDlsrirQvliNlvgNaiKFTdrGsvvlrvslndds.llfeVeDtGvGiaeeeqetlFkaftqaegrkksgGTGLGLAiskrlveamdgelsveS...elgkGScFafelplerg 685
                F A   HEiR PlnG +G l+ La +    +    ++ ++      e+ l  Ln +    k+EaG++  +++a+d+s + e + ++++ + +  g++L+++ + +l +vl +D + +  v++Nl  N ++FT++G + +r  +  d+  +f+V DtG G+ +e  +t+F+ ++ +      gG G+GL is +lv ++++el+veS   ++++G  F f+l+l+ +
  MMETSP1137-20121227|900_1  61 FAAITYHEIRNPLNGTIGWLRSLATNAKVDSDxemKECVNDALVCTEQALHFLNSLSSMLKLEAGKVVANPTAVDISDIFEAATAIIRPQLN-SGVTLIVNAPXNLGDVL-IDATVLTHVIVNLXQNXVRFTQEGTIEIRCDMCYDMtATFSVSDTGTGMTKEMVATVFERYKSMS----RGGVGIGLHISYKLVRVLGSELQVESpwgNKQRGTSFFFKLQLTPA 280
                677788*************998876655555501145555555679*******************************************998.9************9985.9******************************9999989***********************9864....58************************5555779*********9865 PP

  == domain 2    score: 2.6 bits;  conditional E-value: 0.0084
  TIGR02956 687 kaeksatkevidvpparvLlvEDNevnamvaqglleklGhkvtlaesgksAlecle....e.kaFDlallDin 754
                ++++ a  ++   +++rvL+ +D ++n ++ + +le+      ++e+++ A+e++e    +  +F l++ D n
  MMETSP1137-20121227|900_1 487 PVAQEASAVPALPKGLRVLVADDMRMNRKLMHRVLEREMKAEWVVETAETAEEAMErvlsAePRFGLVIFDEN 559
                4444444333333467********************9887766666666666655411113467888887755 PP

>> TIGR02966  phoR_proteo: phosphate regulon sensor kinase PhoR
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.8   0.0   2.4e-25   1.6e-22     115     332 ..      59     274 ..      49     275 .. 0.90

  Alignments for each domain:
  == domain 1    score: 77.8 bits;  conditional E-value: 2.4e-25
  TIGR02966 115 rdFvanvsHELrtPLtvlkGyletleeep.eeddeaaekalelmeeqskrmqsLvedLltLsrlEsaakekeeekvdvaelleelkkeaealseekehqielev.daavkvkgdeeeLrsalsNLveNAikytpeggeitvrweeeeeg.aelsvkDtGeGIaaehlprltERFYRvdksrsretgGtGLGLaIvkHvlerheaeLeieSelg...kGstFsvk 332
                 dF a   HE+r PL    G+l  l+ ++  ++d + ++ ++     +++  ++++ L ++ +lE+ +  ++ ++vd++ + e+ ++ +++  ++  +++ +++  +  +v  d + L+ ++ NL +N +++t+eg +i++r + + ++ a++sv+DtG+G+ +e +  ++ER+      +s ++gG G+GL I    ++   +eL++eS +g   +G++F +k
  MMETSP1137-20121227|900_1  59 LDFAAITYHEIRNPLNGTIGWLRSLATNAkVDSDXEMKECVNDALVCTEQALHFLNSLSSMLKLEAGKVVANPTAVDISDIFEAATAIIRPQLNSG-VTLIVNApXNLGDVLIDATVLTHVIVNLXQNXVRFTQEG-TIEIRCDMCYDMtATFSVSDTGTGMTKEMVATVFERY------KSMSRGGVGIGLHISYKLVRVLGSELQVESPWGnkqRGTSFFFK 274
                6999999*******************999656667778888888899999999*******************************999999888877.8888888577779***********************975.8*******99988***********************7......78889*************************98844468888765 PP

>> TIGR02916  PEP_his_kin: putative PEP-CTERM system histidine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.4   0.0   5.1e-18   3.5e-15     506     674 ..      95     271 ..      65     276 .. 0.80

  Alignments for each domain:
  == domain 1    score: 53.4 bits;  conditional E-value: 5.1e-18
  TIGR02916 506 npeFqeDmleTvesavermkkl..laqLrekgleeekkavdlvdllervieskraq...kprievsvdkd.levradrerlervlghLvqNAleATeeeGkVkirverek.eaavieieDsGqGmseeFirerLFkPFdttKkaGmGiGvyesreyveelGGeieveStpg...kGtif 674
                  e  +D+l   e+a + ++ l  + +L  +++  + +avd++d+ e +++  r q   + +  v++  +   v +d   l +v+++L qN +  T+ eG+++ir ++    +a+ +++D+G+Gm++e   + +F+ +++  + G+GiG++ s ++v+ lG e++veS  g   +Gt f
  MMETSP1137-20121227|900_1  95 MKECVNDALVCTEQALHFLNSLssMLKLEAGKVVANPTAVDISDIFEAATAIIRPQlnsGVTLIVNAPXNlGDVLIDATVLTHVIVNLXQNXVRFTQ-EGTIEIRCDMCYdMTATFSVSDTGTGMTKEM-VATVFERYKSMSRGGVGIGLHISYKLVRVLGSELQVESPWGnkqRGTSF 271
                357788999999999999998855778888888999999****999887666655510044555666666468*********************996.7********98767899*************9.588***********************************65422257766 PP

>> TIGR01386  cztS_silS_copS: heavy metal sensor kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.7   0.0   1.3e-11   8.7e-09     336     448 ..     154     263 ..      54     276 .. 0.74
   2 ?   -2.8   0.1      0.73     5e+02     113     165 ..     468     523 ..     439     534 .. 0.61

  Alignments for each domain:
  == domain 1    score: 32.7 bits;  conditional E-value: 1.3e-11
  TIGR01386 336 gvslkvege...aevegdaqlfrRalsNLlsNAlrytpegstievrverrade.vevsventgkgipeeelsrlFdRFYRvdaarsnseegtGLGLaIvrsiveaHgGeveaesadg 448
                gv+l v+     + v  da+++  ++ NL +N +r+t eg tie+r+    d+ ++ sv++tg g+ +e    +F+R+      +s s  g G+GL I   +v++ g e+++es+ g
  MMETSP1137-20121227|900_1 154 GVTLIVNAPxnlGDVLIDATVLTHVIVNLXQNXVRFTQEG-TIEIRCDMCYDMtATFSVSDTGTGMTKEMVATVFERY------KSMSRGGVGIGLHISYKLVRVLGSELQVESPWG 263
                45555544322578999********************765.799*999988862689********************7......7888999**********************9644 PP

  == domain 2    score: -2.8 bits;  conditional E-value: 0.73
  TIGR01386 113 eeeeaa...eaakleksriilasvaallegkkrrvtilvaldikaekelldalrkt 165
                ++  a    +a +   +++ +a+ a  +   ++ +++lva d++ +++l+++++++
  MMETSP1137-20121227|900_1 468 NAASAPslsSAPAVPSRTSPVAQEASAVPALPKGLRVLVADDMRMNRKLMHRVLER 523
                22222233344556667777777777777778888899999988888888887665 PP

>> TIGR02154  PhoB: phosphate regulon transcriptional regulatory protein PhoB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0   2.1e-06    0.0014       4     108 ..     503     614 ..     500     618 .. 0.85

  Alignments for each domain:
  == domain 1    score: 15.8 bits;  conditional E-value: 2.1e-06
  TIGR02154   4 rilvvedeeairellaynle...kegyevveaedaeealalikeelPd..lilld..WmlpgtsGielarrlrkeeetreiPiimltargeeedrvrgletGaddyvvkPfs 108
                r+lv +d    r+l++  le   k+++ v +ae aeea+ ++  + P   l+++d  +  + +sG + +r +r+   t+ + i    a g  + + + l +Gad    kPf 
  MMETSP1137-20121227|900_1 503 RVLVADDMRMNRKLMHRVLEremKAEWVVETAETAEEAMERVLSAEPRfgLVIFDenFGADRMSGSQAIRLIREAGVTNLVIISCTGALGGSTSEEEILASGADAVWGKPFP 614
                89****************98333457999999*********9999986448999933456789**********999999888888889999999999*************95 PP

>> TIGR02938  nifL_nitrog: nitrogen fixation negative regulator NifL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.3   0.0   1.4e-05    0.0094     281     470 ..      61     250 ..      37     268 .. 0.71

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 1.4e-05
  TIGR02938 281 saai..hrlqgPlnlisaaisvlerrgddagndavaallqqalaageealealekviPqsdaea...v...vpvnlnqvlrdvitllterllaaGivvdwqPaavlPavlGsesrlrslfkalvdnaieamaqkqvkrrelsistaveddlirveiedsGPGiPadlrlkvfePffttkassrkhvGmGlavaqeiva 470
                +aai  h +++Pln     ++ l        +  +++ +++al ++e+al  l+      + ea   v   ++v++ +++  +  ++ ++l  +G+ +       l  vl   + l  ++ +l +n +   ++  +   e++   +  d   + ++ d+G G+ ++++  vfe +   k+ sr +vG+Gl +  ++v 
  MMETSP1137-20121227|900_1  61 FAAItyHEIRNPLNGTIGWLRSLATNAKVDSDXEMKECVNDALVCTEQALHFLNSLSSMLKLEAgkvVanpTAVDISDIFEAATAIIRPQL-NSGVTLIVNAPXNLGDVLIDATVLTHVIVNLXQNXVRFTQEGTI---EIRC-DMCYDMTATFSVSDTGTGMTKEMVATVFERY---KSMSRGGVGIGLHISYKLVR 250
                4555447888999987777888888777778888889999999888888776655443333332100211135777888877777777775.56776666666778888888888888888888888876655533...4433.3455677889*******************97...888999******99998886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (635 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       146  (0.0355924); expected 82.0 (0.02)
Passed bias filter:                      103  (0.0251097); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.52u 0.16s 00:00:00.68 Elapsed: 00:00:00.67
# Mc/sec: 1250.94
//
Query:       MMETSP1137-20121227|901_1  [L=205]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (205 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        60  (0.014627); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.13s 00:00:00.31 Elapsed: 00:00:00.34
# Mc/sec: 795.82
//
Query:       MMETSP1137-20121227|902_1  [L=62]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (62 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        36  (0.00877621); expected 82.0 (0.02)
Passed bias filter:                       34  (0.00828864); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.27
# Mc/sec: 303.09
//
Query:       MMETSP1137-20121227|903_1  [L=422]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (422 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       101  (0.0246221); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.13s 00:00:00.43 Elapsed: 00:00:00.45
# Mc/sec: 1237.76
//
Query:       MMETSP1137-20121227|904_1  [L=81]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (81 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       127  (0.0309605); expected 82.0 (0.02)
Passed bias filter:                      111  (0.02706); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.45
# Mc/sec: 237.58
//
Query:       MMETSP1137-20121227|905_1  [L=335]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (335 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       106  (0.0258411); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.15s 00:00:00.40 Elapsed: 00:00:00.38
# Mc/sec: 1163.59
//
Query:       MMETSP1137-20121227|906_1  [L=191]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.9e-38  127.7   0.1    1.2e-37  127.2   0.0    1.1  1  TIGR02429 pcaI_scoA_fam: 3-oxoacid CoA-transferase, A subunit


Domain annotation for each model (and alignments):
>> TIGR02429  pcaI_scoA_fam: 3-oxoacid CoA-transferase, A subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  127.2   0.0     3e-41   1.2e-37       3     127 ..      36     158 ..      35     167 .. 0.96

  Alignments for each domain:
  == domain 1    score: 127.2 bits;  conditional E-value: 3e-41
  TIGR02429   3 dktiesieealeeiedGatiligGfGtaGlpeelidaliekgakdltivsnnagnGelGlakllkagavkklicsfprqsdskvfeelyraGkielelvpqgtlaeriraaGaGlgalytptgyG 127
                +k+++s++ea+++i+ G+t+l+gGfG +G+pe+l+ al + g+ +lt+vs n g+ + Gl  l+++++v+k+i s+  +  +++fe ++ +G+ie+elvp gtlaer+raaGaG++a+yt tg  
  MMETSP1137-20121227|906_1  36 NKVFASAAEAVSDIKAGSTLLVGGFGLSGVPEALLRALQARGVGNLTVVSSNVGTKDRGLGLLFESRQVSKVIGSYVGE--NETFERQFLEGEIEVELVPMGTLAERMRAAGAGIPAFYTRTGLE 158
                7999************************************************************************875..568**************************************975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (191 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        88  (0.0214529); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.19u 0.14s 00:00:00.33 Elapsed: 00:00:00.33
# Mc/sec: 763.94
//
Query:       MMETSP1137-20121227|908_1  [L=309]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (309 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        63  (0.0153584); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.15s 00:00:00.38 Elapsed: 00:00:00.37
# Mc/sec: 1102.29
//
Query:       MMETSP1137-20121227|910_1  [L=470]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (470 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       173  (0.0421745); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.17s 00:00:00.51 Elapsed: 00:00:00.50
# Mc/sec: 1240.70
//
Query:       MMETSP1137-20121227|911_1  [L=733]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00016   17.7   0.0    0.00025   17.1   0.0    1.2  1  TIGR02100 glgX_debranch: glycogen debranching enzyme GlgX


Domain annotation for each model (and alignments):
>> TIGR02100  glgX_debranch: glycogen debranching enzyme GlgX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.0     6e-08   0.00025     244     343 ..     357     451 ..     347     455 .. 0.77

  Alignments for each domain:
  == domain 1    score: 17.1 bits;  conditional E-value: 6e-08
  TIGR02100 244 vaefkemvkalhdaGievilDvvynhtaegnelgptlslrGiDnasyyrlkeddkrryiddtGtGntlnlshprvlqlvldsLrywveemhvDGFRFDLa 343
                + + + mv+ lh+ G  v + ++      ++         G++   +   +++++     + G G  ln+s+++   +  + Lr  +ee++vDGF+FD +
  MMETSP1137-20121227|911_1 357 FPDPRAMVDSLHEKGFRVTVWLIPFADPHSEA-----YKEGVEKGVWMLGHDGEPEIVKWWQGEGAILNVSDDAACDWFEERLRKMMEETGVDGFKFDAG 451
                56667888888888888877666432222222.....235676666667777888888889*************************************75 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (733 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        57  (0.0138957); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.16s 00:00:00.60 Elapsed: 00:00:00.40
# Mc/sec: 2418.70
//
Query:       MMETSP1137-20121227|912_1  [L=150]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.6e-10   38.3   0.0    3.5e-10   37.8   0.0    1.3  1  TIGR00357 TIGR00357: methionine-R-sulfoxide reductase


Domain annotation for each model (and alignments):
>> TIGR00357  TIGR00357: methionine-R-sulfoxide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.8   0.0   8.7e-14   3.5e-10       3      64 ..       9      70 ..       7     125 .. 0.83

  Alignments for each domain:
  == domain 1    score: 37.8 bits;  conditional E-value: 8.7e-14
  TIGR00357  3 sdeelkkkltklqyevtqnkgtekpftneykk.nkeeGiyvditsgeplfssedkfdsgcGWP 64
               s+ee+++kltk++y+v++++gte+  ++e+ +   ++G + + ++++pl+s++ kf+ + GW 
  MMETSP1137-20121227|912_1  9 SEEEWRAKLTKEEYRVLRQNGTERYGRGEFCTfXPRTGFFSCRACDHPLYSAASKFQDD-GWD 70
               89****************************8825689*******************865.775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (150 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        77  (0.0187713); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.18u 0.16s 00:00:00.34 Elapsed: 00:00:00.32
# Mc/sec: 618.70
//
Query:       MMETSP1137-20121227|913_1  [L=320]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (320 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        51  (0.012433); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.15s 00:00:00.40 Elapsed: 00:00:00.35
# Mc/sec: 1206.76
//
Query:       MMETSP1137-20121227|914_1  [L=954]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.9e-16   55.4   0.0    9.9e-16   54.4   0.0    1.4  1  TIGR04121 DEXH_lig_assoc: DEXH box helicase, DNA ligase-associated
    1.6e-07   27.8   0.1    2.4e-07   27.2   0.1    1.2  1  TIGR03817 DECH_helic: helicase/secretion neighborhood putative DEAH-box helicase
    3.9e-05   20.4   0.0      0.012   12.1   0.0    2.2  2  TIGR00643 recG: ATP-dependent DNA helicase RecG
      4e-05   20.7   0.1     0.0031   14.5   0.0    2.3  2  TIGR01587 cas3_core: CRISPR-associated helicase Cas3
    7.9e-05   19.4   0.0    0.00015   18.5   0.0    1.4  1  TIGR00614 recQ_fam: ATP-dependent DNA helicase, RecQ family
     0.0009   16.4   0.0     0.0016   15.6   0.0    1.3  1  TIGR02782 TrbB_P: P-type conjugative transfer ATPase TrbB
     0.0063   12.8   0.0      0.012   11.9   0.0    1.4  1  TIGR01389 recQ: ATP-dependent DNA helicase RecQ
     0.0066   13.4   0.0        0.2    8.5   0.0    2.2  2  TIGR03158 cas3_cyano: CRISPR-associated helicase Cas3, subtype CYANO
     0.0073   12.5   0.0      0.012   11.7   0.0    1.3  1  TIGR01970 DEAH_box_HrpB: ATP-dependent helicase HrpB


Domain annotation for each model (and alignments):
>> TIGR04121  DEXH_lig_assoc: DEXH box helicase, DNA ligase-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.4   0.0   2.2e-18   9.9e-16      18     195 ..     194     359 ..     184     375 .. 0.84

  Alignments for each domain:
  == domain 1    score: 54.4 bits;  conditional E-value: 2.2e-18
  TIGR04121  18 Qkevlea.aeegesglliapTGaGKTlavflpslielaakekpkkglkvlyitPLkaLakdieraleapieelgleirvelrtGDtssserarqrkkppdiLltTpEslaLllsskdaeklfkdlravvvDElHeLlgskRGdlleLaLarLrrlapel....rvvglsATvgnleeaaevll 195
                Q++v+++ ++++++ l+ apTG+GKT  + +++l  l+  ++p+   + ++i+PL++La+ ++  l a         ++e+ tG+t+++ +   r    +i++ Tp    ++  + +++k +++++ ++vDE+H L+g   G  le  ++r+r ++ ++    r+v+ls  ++n +++ae++ 
  MMETSP1137-20121227|914_1 194 QTQVFSTlFNSDDNVLIGAPTGSGKTICAEFAILRMLQ--HEPN--GRCVFIAPLQSLAAKVASQLGA---------SIEMLTGETTTDLKLLDR---NTIIISTPQRWDMISRRWKQRKGVQNVSLLIVDEMH-LIGGEVGPVLEVVISRMRYISSQMesrcRIVALSTSLANAKDLAEWIG 359
                6666654267788999****************999888..3333..4799**********99987765.........567779999998887655...579*********************************.89999************9877665333389***************986 PP

>> TIGR03817  DECH_helic: helicase/secretion neighborhood putative DEAH-box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.2   0.1   5.2e-10   2.4e-07      47     324 ..     201     476 ..     185     511 .. 0.73

  Alignments for each domain:
  == domain 1    score: 27.2 bits;  conditional E-value: 5.2e-10
  TIGR03817  47 lahaGehvvvatgtasGkslayllPvlsalaedpratalylaPtkalaadqlravkeleerdvraatydGdtpaeerewirekaryvltnPdmlhlgilpsharWakflralryvvvdechsyrGvfGshvalvlrrlrrlcaryGaePvfllasatsadpaaaasrliGleveavtedgsPrgartvvlwePalle.........legengapvrrsasaeaadlladlvaegvrtltfvrsrrgaevvaleakerlaevdaelaervaayraGylaedrrelera 324
                l ++ ++v + + t sGk+++  + +l  l+++p+ + +++aP ++laa       +l   +   +++ G+t ++ +    ++ +++++ P      ++    +  k ++++  ++vde h   G  G  +  v+ r+r +++++ +   ++  s+  a+ a+  ++ iG   + + + +s   ++ + ++  ++           ++      v + a  + a ++   +++ v t + + +  +a+ +a+  +  +++v++   ++v ay  G+l e   + e++
  MMETSP1137-20121227|914_1 201 LFNSDDNVLIGAPTGSGKTICAEFAILRMLQHEPNGRCVFIAPLQSLAAKVAS---QL---GASIEMLTGETTTDLKLL--DRNTIIISTPQRWD--MISRRWKQRKGVQNVSLLIVDEMHLIGGEVGPVLEVVISRMRYISSQMESRCRIVALSTSLAN-AKDLAEWIGCSSHGIFNFHSNVRPVPLEIHIQGFDIahvpsrllaMAKPAYYAVVNHAHEKPAVVFVPSAKQAVLTAVDMLTYATADXLAADIAPFVKDVNEGTLQHVLAYGIGFLHEGLSAAEQQ 476
                5566789****************************************985443...33...44678999****999866..556899****8654..4443334446689**********************************9999887776665555.556667889887777776665554444443333222223355544444444456666667777777777788888888888888888888888888888888888999999999998876666653 PP

>> TIGR00643  recG: ATP-dependent DNA helicase RecG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.1   0.0   2.6e-05     0.012     260     323 ..     209     267 ..     202     284 .. 0.75
   2 !    5.9   0.0    0.0021      0.95     480     536 ..     458     513 ..     441     558 .. 0.74

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 2.6e-05
  TIGR00643 260 LlqGdVGsGKTvVavlallavies..GyqvalmaPTeiLAeQhyeklrelleplgievalLtgslk 323
                L+    GsGKT+ a +a+l+++++    +++++aP + LA+  + +l         ++++Ltg+++
  MMETSP1137-20121227|914_1 209 LIGAPTGSGKTICAEFAILRMLQHepNGRCVFIAPLQSLAAKVASQLGA-------SIEMLTGETT 267
                555568***************98733468**********9987776544.......4445555554 PP

  == domain 2    score: 5.9 bits;  conditional E-value: 0.0021
  TIGR00643 480 fpklnvallhgrlksdekeevleeFrekevdiLvaTtviEvGvdvPnatvmviedae 536
                +  + +++lh  l+++e+++vl+  +++ v++Lv T  +  G+   +a ++v++d +
  MMETSP1137-20121227|914_1 458 VLAYGIGFLHEGLSAAEQQAVLALHESGAVQVLVVTHSMCWGLT-AQAHLVVLMDTQ 513
                45678899999999999999999999999999999988777775.366666666654 PP

>> TIGR01587  cas3_core: CRISPR-associated helicase Cas3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.0   6.8e-06    0.0031       2      51 ..     208     257 ..     207     279 .. 0.86
   2 ?    4.0   0.0     0.011       4.8     114     155 ..     290     332 ..     263     358 .. 0.74

  Alignments for each domain:
  == domain 1    score: 14.5 bits;  conditional E-value: 6.8e-06
  TIGR01587   2 lvieAPtGyGKteaallwalklikkqkadkvifalPtratanamyerlke 51 
                ++i APtG+GKt  a    l  ++++ + + +f+ P++++a  ++ +l +
  MMETSP1137-20121227|914_1 208 VLIGAPTGSGKTICAEFAILRMLQHEPNGRCVFIAPLQSLAAKVASQLGA 257
                7899********99999999999****************99888877655 PP

  == domain 2    score: 4.0 bits;  conditional E-value: 0.011
  TIGR01587 114 geaeitlasian.SvliiDEvhayeeytkalllallevlkdvd 155
                + + ++  +++n S+li+DE+h++  ++   l++++ +++++ 
  MMETSP1137-20121227|914_1 290 SRRWKQRKGVQNvSLLIVDEMHLIGGEVGPVLEVVISRMRYIS 332
                55555555565449***********999999999999887665 PP

>> TIGR00614  recQ_fam: ATP-dependent DNA helicase, RecQ family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.0   3.3e-07   0.00015       9     139 ..     187     313 ..     182     318 .. 0.72

  Alignments for each domain:
  == domain 1    score: 18.5 bits;  conditional E-value: 3.3e-07
  TIGR00614   9 lesfrpvqlevinavlegrdalvv.matGgGksLCyqlpavvs.....dgltlvisPLisLmeDqvlqLkasdisatlLnsaqskeeakevladlkdgklkllYvtPekvsksksllqkleerkkltliavDeahCi 139
                +++f p q +v  + ++  d++++  +tG Gk +C  ++ + +     +g  + i+PL sL      qL   + s  +L+++ +++       +l d +  ++  tP +     +  ++ +  ++++l++vDe h i
  MMETSP1137-20121227|914_1 187 FSHFNPIQTQVFSTLFNSDDNVLIgAPTGSGKTICAEFAILRMlqhepNGRCVFIAPLQSLAAKVASQL---GASIEMLTGETTTD------LKLLD-RNTIIISTPQRWDMISRRWKQRKGVQNVSLLIVDEMHLI 313
                689**************9987666379********99887754334447999*********98777766...45677888888877......23322.234556677766554455555557777777777777765 PP

>> TIGR02782  TrbB_P: P-type conjugative transfer ATPase TrbB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   3.5e-06    0.0016     125     205 ..     194     278 ..     188     288 .. 0.82

  Alignments for each domain:
  == domain 1    score: 15.6 bits;  conditional E-value: 3.5e-06
  TIGR02782 125 qadvlreavaarknilvvGGtgsGkttLanallaeiaksapddrvviiedtaelqCkae....navalrtsddvisltrLlkatl 205
                q++v++ + ++  n+l+   tgsGkt  a   + ++ ++ p+ r v i   + l  k        + + t +++ +l+ L + t+
  MMETSP1137-20121227|914_1 194 QTQVFSTLFNSDDNVLIGAPTGSGKTICAEFAILRMLQHEPNGRCVFIAPLQSLAAKVAsqlgASIEMLTGETTTDLKLLDRNTI 278
                7788899999*********************9****************9887776655411115688888888888888877776 PP

>> TIGR01389  recQ: ATP-dependent DNA helicase RecQ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.9   0.0   2.6e-05     0.012      11      73 ..     187     255 ..     183     345 .. 0.77

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 2.6e-05
  TIGR01389  11 yeeFRggqeeiieevldg.rdvlavlPtGGGkslCYqvPaLll.....kgltvvisPLisLmkDqvdqL 73 
                +++F + q ++ +++ +   +vl   PtG Gk +C     L +     +g  v i+PL sL +    qL
  MMETSP1137-20121227|914_1 187 FSHFNPIQTQVFSTLFNSdDNVLIGAPTGSGKTICAEFAILRMlqhepNGRCVFIAPLQSLAAKVASQL 255
                689***********997615677889*********87665543335556899******99987655544 PP

>> TIGR03158  cas3_cyano: CRISPR-associated helicase Cas3, subtype CYANO
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.5   0.0   0.00044       0.2       2      80 ..     194     276 ..     193     284 .. 0.74
   2 ?    2.2   0.0     0.037        17     141     188 ..     291     345 ..     283     355 .. 0.74

  Alignments for each domain:
  == domain 1    score: 8.5 bits;  conditional E-value: 0.00044
  TIGR03158   2 qvavlealkekdadvllntAptGaGKtlaa...lvevlseeldt..ialyPtNaLiedqekaikelvdvlkperdvellavska 80 
                q +v+ +l + d + +l+ AptG+GKt  a   ++ +l++e +   + + P   L+ +   +    ++ l +e  ++l  + ++
  MMETSP1137-20121227|914_1 194 QTQVFSTLFNSDDN-VLIGAPTGSGKTICAefaILRMLQHEPNGrcVFIAPLQSLAAKVASQLGASIEMLTGETTTDLKLLDRN 276
                67778877777755.5678********75421144555665555785556******9999999999999999998888777665 PP

  == domain 2    score: 2.2 bits;  conditional E-value: 0.037
  TIGR03158 141 kly......tkfsvvifDEFHlydakqlasllflldemqlirteecr.rklvfLs 188
                +++      +++s++i+DE Hl   +    l  ++  m+ i+++  +  ++v Ls
  MMETSP1137-20121227|914_1 291 RRWkqrkgvQNVSLLIVDEMHLIGGEVGPVLEVVISRMRYISSQMESrCRIVALS 345
                44444444489***********998877777778899999988877746777776 PP

>> TIGR01970  DEAH_box_HrpB: ATP-dependent helicase HrpB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.7   0.0   2.7e-05     0.012      14     159 ..     202     350 ..     192     432 .. 0.69

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 2.7e-05
  TIGR01970  14 laakpqvvLeappGaGkstalPLalLda.pwligrkiilLePrrlaaravaerlaselgeevGetvGyrvrlenkvsaktrlevvte...GiltrmlqdDPeLegvdllifDefher..slda..DlaLalaldvqsalreDLkilimsatLdg 159
                +++ ++v++ ap+G+Gk+     a+L +   + +++ +++ P +  a  va+ l  +++   Get      ++ k   +  + + t     ++ r+ ++   ++ v+lli+De+h    ++    ++ ++  + + s++    +i+++s  L +
  MMETSP1137-20121227|914_1 202 FNSDDNVLIGAPTGSGKTICAEFAILRMlQHEPNGRCVFIAPLQSLAAKVASQLGASIEMLTGETT-----TDLKLLDRNTIIISTPqrwDMISRRWKQRKGVQNVSLLIVDEMHLIggEVGPvlEVVISRMRYISSQMESRCRIVALSTSLAN 350
                566789999*********99988877652345799*******887777788888888888888875.....34444444444444431224788999999999**********99430022220022222234455666666666666666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (954 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       109  (0.0265724); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                        25  (0.00609459); expected 4.1 (0.001)
Passed Fwd filter:                         9  (0.00219405); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.79u 0.17s 00:00:00.96 Elapsed: 00:00:00.65
# Mc/sec: 1937.19
//
Query:       MMETSP1137-20121227|915_1  [L=104]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (104 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       113  (0.0275475); expected 82.0 (0.02)
Passed bias filter:                      108  (0.0263286); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.26
# Mc/sec: 527.96
//
Query:       MMETSP1137-20121227|916_1  [L=391]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (391 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        78  (0.0190151); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.14s 00:00:00.41 Elapsed: 00:00:00.39
# Mc/sec: 1323.28
//
Query:       MMETSP1137-20121227|917_1  [L=35]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (35 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        26  (0.00633837); expected 82.0 (0.02)
Passed bias filter:                       26  (0.00633837); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:00.27
# Mc/sec: 171.10
//
Query:       MMETSP1137-20121227|918_1  [L=326]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.5e-31  105.6   0.8    6.6e-20   69.3   0.0    2.8  2  TIGR00521 coaBC_dfp: phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase
    1.8e-30  103.9   0.3    6.7e-22   76.0   0.1    3.1  2  TIGR02113 coaC_strep: phosphopantothenoylcysteine decarboxylase
     0.0034   15.0   0.2       0.03   11.9   0.0    2.2  3  TIGR00421 ubiX_pad: polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases
     0.0056   14.1   0.0      0.009   13.4   0.0    1.3  1  TIGR02699 archaeo_AfpA: archaeoflavoprotein AfpA


Domain annotation for each model (and alignments):
>> TIGR00521  coaBC_dfp: phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.7   0.1   8.4e-12   8.6e-09       2      46 ..      65     109 ..      64     124 .. 0.94
   2 !   69.3   0.0   6.5e-23   6.6e-20      71     180 ..     178     308 ..     165     321 .. 0.93

  Alignments for each domain:
  == domain 1    score: 32.7 bits;  conditional E-value: 8.4e-12
  TIGR00521   2 enkkillgvtgsiAayktvelvreLvkagaevkvilteeakkfit 46 
                ++ ++ ++v+gsiAa+k++el++ L  ag +v ++++e+a+k+++
  MMETSP1137-20121227|918_1  65 RGSRVCVCVSGSIAAVKAPELASLLLAAGVHVDMVVSEAAAKLLQ 109
                5789**************************************976 PP

  == domain 2    score: 69.3 bits;  conditional E-value: 6.5e-23
  TIGR00521  71 lehielakeadllliaPataniiskiaagladdlvstillaas.....................aPiilapamneamyeqeavkenlkrLkekgiiliepdegllacdeegkgrlaepeeivkkveeelsk 180
                + h+elak  +llliaP+ an+++  a g    l+++il a                       +P+++apamn+ my+q++++e+l++L  +g  ++ p +  lac+++g g++a+ ++iv  v+e l +
  MMETSP1137-20121227|918_1 178 VLHVELAKRNELLLIAPLCANTLADAALGRCGSLLTSILRAWRysldpefslpiaerfgtyavnKPVLVAPAMNTIMYHQSITAEHLQTLRARGAAIVPPVSKRLACGDTGMGAMASVDDIVRGVVEMLRE 308
                56*************************************998888999999*************************************************************************9999877 PP

>> TIGR02113  coaC_strep: phosphopantothenoylcysteine decarboxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.0   1.2e-07   0.00013       2      43 ..      68     109 ..      67     131 .. 0.91
   2 !   76.0   0.1   6.5e-25   6.7e-22      68     176 ..     178     305 ..     171     306 .. 0.81

  Alignments for each domain:
  == domain 1    score: 19.7 bits;  conditional E-value: 1.2e-07
  TIGR02113   2 killavsGsiaaykaadltsqltklGydvevlmtkaatefit 43 
                ++ ++vsGsiaa ka +l+s l   G +v++++++aa ++++
  MMETSP1137-20121227|918_1  68 RVCVCVSGSIAAVKAPELASLLLAAGVHVDMVVSEAAAKLLQ 109
                57889********************************99876 PP

  == domain 2    score: 76.0 bits;  conditional E-value: 6.5e-25
  TIGR02113  68 inhielakkadlflvapasantiaklahGfadnlvtsvala....lea...............evpkliapamntkmyenpitqknieilkkigyqeiepkesllacGdvGeGaladletilekikei 176
                + h+elak+ +l+l+ap +ant+a  a G+   l+ts+  a    l++               + p l+apamnt my+++it + +++l+  g   + p +  lacGd+G Ga+a +++i++ + e+
  MMETSP1137-20121227|918_1 178 VLHVELAKRNELLLIAPLCANTLADAALGRCGSLLTSILRAwrysLDPefslpiaerfgtyavNKPVLVAPAMNTIMYHQSITAEHLQTLRARGAAIVPPVSKRLACGDTGMGAMASVDDIVRGVVEM 305
                78***********************************965522222221111111122222124689*******************************************************988765 PP

>> TIGR00421  ubiX_pad: polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.9   0.0     3e-05      0.03       1      59 [.      68     128 ..      68     147 .. 0.85
   2 ?   -3.8   0.0       1.9   1.9e+03      78     102 ..     189     213 ..     180     215 .. 0.73
   3 ?    0.5   0.0     0.094        97     125     147 ..     257     279 ..     245     311 .. 0.73

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 3e-05
  TIGR00421   1 kivvaltGasGvilgirllevlkelgvevelviskaakkiikeeld..yeekeveelatkt 59 
                ++ v++ G+  ++ +  l   l ++gv+v++v+s+aa+k++++     + +++++e+a+  
  MMETSP1137-20121227|918_1  68 RVCVCVSGSIAAVKAPELASLLLAAGVHVDMVVSEAAAKLLQATYKglIPWRQLQEIAEAH 128
                5789************************************997654337889999998765 PP

  == domain 2    score: -3.8 bits;  conditional E-value: 1.9
  TIGR00421  78 amvvvPcsmktlsaianGlaenllt 102
                 ++++P    tl+  a G +  llt
  MMETSP1137-20121227|918_1 189 LLLIAPLCANTLADAALGRCGSLLT 213
                5678888888888888887777665 PP

  == domain 3    score: 0.5 bits;  conditional E-value: 0.094
  TIGR00421 125 nsihlenllrlsklGaiilPpvp 147
                +si  e l  l   Ga i+Ppv 
  MMETSP1137-20121227|918_1 257 QSITAEHLQTLRARGAAIVPPVS 279
                56666777777788888888875 PP

>> TIGR02699  archaeo_AfpA: archaeoflavoprotein AfpA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.0   8.8e-06     0.009      78     132 ..     186     240 ..     159     265 .. 0.84

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 8.8e-06
  TIGR02699  78 kydfllvapatantvakialgiadtlvtnaviqalkakvpvyilpsdykkGkvkt 132
                + ++ll+ap  ant a  alg + +l+t        +  p + lp  ++ G+   
  MMETSP1137-20121227|918_1 186 RNELLLIAPLCANTLADAALGRCGSLLTSILRAWRYSLDPEFSLPIAERFGTYAV 240
                579*************************877777777788888888888777655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (326 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       145  (0.0353486); expected 82.0 (0.02)
Passed bias filter:                      133  (0.0324232); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.23u 0.23s 00:00:00.46 Elapsed: 00:00:00.47
# Mc/sec: 915.50
//
Query:       MMETSP1137-20121227|919_1  [L=304]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (304 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        89  (0.0216967); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.25s 00:00:00.39 Elapsed: 00:00:00.31
# Mc/sec: 1294.34
//
Query:       MMETSP1137-20121227|920_1  [L=153]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (153 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        87  (0.0212092); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.23s 00:00:00.33 Elapsed: 00:00:00.36
# Mc/sec: 560.95
//
Query:       MMETSP1137-20121227|921_1  [L=49]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (49 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        23  (0.00560702); expected 82.0 (0.02)
Passed bias filter:                       18  (0.0043881); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.06u 0.20s 00:00:00.26 Elapsed: 00:00:00.33
# Mc/sec: 195.98
//
Query:       MMETSP1137-20121227|922_1  [L=162]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (162 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        73  (0.0177962); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.20s 00:00:00.34 Elapsed: 00:00:00.30
# Mc/sec: 712.74
//
Query:       MMETSP1137-20121227|923_1  [L=166]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (166 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       116  (0.0282789); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.20s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 755.52
//
Query:       MMETSP1137-20121227|924_1  [L=265]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (265 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       203  (0.0494881); expected 82.0 (0.02)
Passed bias filter:                      131  (0.0319356); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.14s 00:00:00.37 Elapsed: 00:00:00.38
# Mc/sec: 920.45
//
Query:       MMETSP1137-20121227|925_1  [L=210]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (210 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        78  (0.0190151); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.14s 00:00:00.35 Elapsed: 00:00:00.34
# Mc/sec: 815.23
//
Query:       MMETSP1137-20121227|926_1  [L=513]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.1e-11   39.9   1.1      0.037   12.1   0.0    6.3  7  TIGR00756 PPR: pentatricopeptide repeat domain


Domain annotation for each model (and alignments):
>> TIGR00756  PPR: pentatricopeptide repeat domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.0     0.074     3e+02      14      27 ..     215     228 ..     210     233 .. 0.83
   2 ?   -0.3   0.0     0.077   3.2e+02      13      30 ..     249     266 ..     238     270 .. 0.79
   3 !    8.2   0.0   0.00015      0.63       3      28 ..     275     300 ..     274     308 .. 0.87
   4 !    6.9   0.0   0.00038       1.6       3      33 ..     311     341 ..     309     343 .. 0.89
   5 !   12.1   0.0   8.9e-06     0.037       2      32 ..     345     375 ..     344     378 .. 0.91
   6 !    3.7   0.1     0.004        16       5      21 ..     425     441 ..     422     442 .. 0.88
   7 ?   -3.1   0.0      0.62   2.5e+03      12      23 ..     476     487 ..     476     488 .. 0.85

  Alignments for each domain:
  == domain 1    score: -0.2 bits;  conditional E-value: 0.074
  TIGR00756  14 grveeAlelfdeMk 27 
                +r++ Al+++ + +
  MMETSP1137-20121227|926_1 215 RRWDQALQIYSKSQ 228
                799******98755 PP

  == domain 2    score: -0.3 bits;  conditional E-value: 0.077
  TIGR00756  13 agrveeAlelfdeMkerg 30 
                  r++ A++++ ++ e+ 
  MMETSP1137-20121227|926_1 249 LQRYDVAVQVWSSISECE 266
                5799*******9998875 PP

  == domain 3    score: 8.2 bits;  conditional E-value: 0.00015
  TIGR00756   3 yntlisglckagrveeAlelfdeMke 28 
                +n+ ++++ ++g ++eAl+lf ++ +
  MMETSP1137-20121227|926_1 275 FNAAMCAYERSGAWDEALRLFARLDK 300
                799******************98754 PP

  == domain 4    score: 6.9 bits;  conditional E-value: 0.00038
  TIGR00756   3 yntlisglckagrveeAlelfdeMkergivP 33 
                y   i++++  g+ e A el+ ++++ g+ P
  MMETSP1137-20121227|926_1 311 YYFAIRACGAGGKAEQADELLSRIEAVGVTP 341
                56679******************99999987 PP

  == domain 5    score: 12.1 bits;  conditional E-value: 8.9e-06
  TIGR00756   2 tyntlisglckagrveeAlelfdeMkergiv 32 
                +yn+ +++++  g++  A  ++ +M+++  +
  MMETSP1137-20121227|926_1 345 MYNAALRACATKGEWPRADAILGRMRRMRTR 375
                7*************************98765 PP

  == domain 6    score: 3.7 bits;  conditional E-value: 0.004
  TIGR00756   5 tlisglckagrveeAle 21 
                +l++g++ ag+ + A+ 
  MMETSP1137-20121227|926_1 425 SLLRGCALAGDADAAFA 441
                89************987 PP

  == domain 7    score: -3.1 bits;  conditional E-value: 0.62
  TIGR00756  12 kagrveeAlelf 23 
                +a+r e+A++l+
  MMETSP1137-20121227|926_1 476 RARREEKARSLL 487
                68999***9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (513 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       149  (0.0363237); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.16s 00:00:00.52 Elapsed: 00:00:00.49
# Mc/sec: 1381.85
//
Query:       MMETSP1137-20121227|927_1  [L=175]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (175 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       133  (0.0324232); expected 82.0 (0.02)
Passed bias filter:                      103  (0.0251097); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.16s 00:00:00.36 Elapsed: 00:00:00.30
# Mc/sec: 769.94
//
Query:       MMETSP1137-20121227|928_1  [L=343]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (343 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       141  (0.0343735); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.15s 00:00:00.43 Elapsed: 00:00:00.33
# Mc/sec: 1371.89
//
Query:       MMETSP1137-20121227|929_1  [L=341]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      3e-17   60.1   3.7    4.7e-17   59.5   2.6    1.3  1  TIGR00894 2A0114euk: Na(+)-dependent inorganic phosphate cotransporter
    0.00062   16.6   9.0     0.0011   15.8   6.3    1.5  1  TIGR00893 2A0114: D-galactonate transporter


Domain annotation for each model (and alignments):
>> TIGR00894  2A0114euk: Na(+)-dependent inorganic phosphate cotransporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.5   2.6   2.3e-20   4.7e-17     248     442 ..      65     264 ..       3     269 .. 0.89

  Alignments for each domain:
  == domain 1    score: 59.5 bits;  conditional E-value: 2.3e-20
  TIGR00894 248 srkslPiKailkSlpvwaivvasvghiwgleilltylPtfiksvlhlnirenGllSsLPyllafllavlasslady.llsrkklsktavrKlftaiglllkglivvalayls.......snaisaiilltlanalaglvlsGvlinaldlaPryagiikgvttligslaglissllvgqllkqdsksaWkkvFllaalvavis 442
                  +++P+  ++ S+pvwa  +a+ + ++ l   l +lPt++   +++n+ + G  S+   +++ + +v a+ + d  l+    l +t  rK+++ i+++++g ++v+la+l+        n  +a ++ + a a ++++ +G+  +a d++ ry++++ g t +++ + g + +  +g +l    + ++  +F l+ +v + +
  MMETSP1137-20121227|929_1  65 RVREVPWSDMAVSRPVWALAAAHSASNFFLYFALSWLPTYFA--YQFNLSTAGAASASXAAVRAVASVSAGAICDRvLVGWAGLPLTRARKVMQGIACVGPGAAMVSLALLAsgvagleLNQNTAQAIFVGALACQSFSAAGFGCAAQDISRRYSSLLYGSTSAVSVVVGAFGQYFTGVILDLT-DRDFSAMFYLTGAVELCG 264
                55789************************************7..789999************************962667899***********************9999975666666567778888889999*********************************************99765.467899999999887655 PP

>> TIGR00893  2A0114: D-galactonate transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   6.3   5.2e-07    0.0011     196     394 ..      49     267 ..       1     272 [. 0.56

  Alignments for each domain:
  == domain 1    score: 15.8 bits;  conditional E-value: 5.2e-07
  TIGR00893 196 a..........gkknseakkaqikelLkdrrviglalgqflvnillyffltwfplylkqerglslleagllaslpaivgfvgmvlggilsdll.lkkg.........kslvlarktaiiaglvlsll.liatnlvaskiaalalvalaffgkglaailwavisdvlskeiagltgGlinllGnlagivgPivigaiaatt.Gsfagallvvaalaligals 394
                           ++  + +++     +  +r v++la++ +++n  lyf l+w p+y    ++++l +ag  ++  a+v +v+ v  g + d + + +          +   +a+  +  a++ l+ll +++++l  ++ +a a+ + a  ++ ++a+++   ++ +s++ + l  G+++++  + g +g   +g+i + t   f++++++ +a+ l g+l+
  MMETSP1137-20121227|929_1  49 PxdesgvagamERAMERVREVPWSDMAVSRPVWALAAAHSASNFFLYFALSWLPTYFA--YQFNLSTAGAASASXAAVRAVASVSAGAICDRVlVGWAglpltrarkVMQGIACVGPGAAMVSLALLaSGVAGLELNQNTAQAIFVGALACQSFSAAGFGCAAQDISRRYSSLLYGSTSAVSVVVGAFGQYFTGVILDLTdRDFSAMFYLTGAVELCGVLM 267
                1445554433333333333333344556899*************************96..55666778888888888877777777776665414555633333322222344444444433333330334445445555555554455555556666666666666666666666666666666666666666665544146889999999999988876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (341 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       100  (0.0243784); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.29u 0.15s 00:00:00.43 Elapsed: 00:00:00.44
# Mc/sec: 1022.92
//
Query:       MMETSP1137-20121227|930_1  [L=73]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (73 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        62  (0.0151146); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.17s 00:00:00.32 Elapsed: 00:00:00.27
# Mc/sec: 356.86
//
Query:       MMETSP1137-20121227|932_1  [L=64]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        73  (0.0177962); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.14s 00:00:00.26 Elapsed: 00:00:00.24
# Mc/sec: 351.97
//
Query:       MMETSP1137-20121227|933_1  [L=116]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (116 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       107  (0.0260848); expected 82.0 (0.02)
Passed bias filter:                       96  (0.0234032); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.10s 00:00:00.25 Elapsed: 00:00:00.30
# Mc/sec: 510.36
//
Query:       MMETSP1137-20121227|934_1  [L=277]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (277 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        66  (0.0160897); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.15s 00:00:00.37 Elapsed: 00:00:00.32
# Mc/sec: 1142.53
//
Query:       MMETSP1137-20121227|935_1  [L=301]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (301 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        86  (0.0209654); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.14s 00:00:00.41 Elapsed: 00:00:00.42
# Mc/sec: 945.92
//
Query:       MMETSP1137-20121227|936_1  [L=732]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (732 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       106  (0.0258411); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.16s 00:00:00.60 Elapsed: 00:00:00.53
# Mc/sec: 1822.94
//
Query:       MMETSP1137-20121227|937_1  [L=277]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.6e-81  272.3   0.0    2.3e-81  271.7   0.0    1.2  1  TIGR00414 serS: serine--tRNA ligase
     0.0074   13.0   0.0      0.014   12.1   0.0    1.4  2  TIGR00408 proS_fam_I: proline--tRNA ligase
  ------ inclusion threshold ------
      0.045   10.9   0.0      0.072   10.2   0.0    1.3  1  TIGR02367 PylS_Cterm: pyrrolysine--tRNA ligase, C-terminal region


Domain annotation for each model (and alignments):
>> TIGR00414  serS: serine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  271.7   0.0   1.7e-84   2.3e-81     225     418 .]       5     196 ..       3     196 .. 0.96

  Alignments for each domain:
  == domain 1    score: 271.7 bits;  conditional E-value: 1.7e-84
  TIGR00414 225 edlyLiaTaEvplanlhaneileeeelpikyaavspcFRkEAGsaGkdtkGliRvHqFeKvElvkfvkpe..esaeeleeliedaekilkeLelPyrvvnlcsgdlgfsaakkyDlEvWlpaqnkYrEisScSnctdfQarrlkirykekkkkk..kkyvhtlNgtalavgRvlvailEnyqeedGkvevPevLrkyl 418
                ed yLiaT+E+p+ ++h+n++l  ++lpikya++s+cFRkEAGs+G+d  G      FeK+E++++++p+  +s+ ++e +i + ++++k+L++Pyrvvn++sg+l+ +aakkyDlE+W+p++n +rE++ScSnctd+Q+rrl++r+ + k+ +  k+yvh+lN+t +a++R++++++Enyq++ G ++vPevL++y+
  MMETSP1137-20121227|937_1   5 EDQYLIATSEQPICAYHHNDWLGPAQLPIKYAGFSTCFRKEAGSHGRDQLG-----XFEKIEQFVLTSPDgrDSWDMQEXMIGNCKEFYKSLGIPYRVVNIVSGELNDAAAKKYDLEAWFPGSNAHRELVSCSNCTDYQSRRLEVRFGQAKTDDgkKRYVHMLNSTLIATERAMCCVIENYQTQTG-IKVPEVLQQYM 196
                789*********************************************998.....59***********7668**************************************************************************987654444****************************99.99********8 PP

>> TIGR00408  proS_fam_I: proline--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.1   0.0     1e-05     0.014     104     277 ..      11     189 ..       4     205 .. 0.77
   2 ?   -3.0   0.0      0.41   5.6e+02     366     398 ..     231     263 ..     224     270 .. 0.75

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 1e-05
  TIGR00408 104 PtsEtvlynlykkwvksyrdLPlklnqivnvfRyEk.khtrPllRtrEflfkEaHtlhataeeaeeevlkildlYkelieelLaiPvlvgrksekekFaGaeytvaieaimpdgralqi.atsHdLgqnFaktFeikfenkeg...ekayayq.tsyGl.stRvigaliliHsDdkGLvlP 277
                 tsE  ++ +++      ++LP+k+  + + fR E   h r  l   E + +   t   + +++ +  + ++   ke+++ +L+iP+ v      e    a+  + +ea +p   a        + ++  ++  e++f + +    +k y++  +s  +  +R +  +i     ++G+ +P
  MMETSP1137-20121227|937_1  11 ATSEQPICAYHHNDWLGPAQLPIKYAGFSTCFRKEAgSHGRDQLGXFEKIEQFVLT-SPDGRDSWDMQEXMIGNCKEFYK-SLGIPYRVVNIVSGELNDAAAKKYDLEAWFPGSNAHRElVSCSNCTDYQSRRLEVRFGQAKTddgKKRYVHMlNSTLIaTERAMCCVIENYQTQTGIKVP 189
                69**********9999*******************846999999988877555444.46899999***************.******9999999999999999999999999987765414456677777899999885432223377777652333332467777777777777777666 PP

  == domain 2    score: -3.0 bits;  conditional E-value: 0.41
  TIGR00408 366 vevsldeleekvkelleelkedlfkkAkelvee 398
                +++  del+e ++ +l  l+++l + Ake+ e+
  MMETSP1137-20121227|937_1 231 INAGKDELQEYMNSILPTLNSALSTLAKERPEK 263
                556678888888888888888888888887665 PP

>> TIGR02367  PylS_Cterm: pyrrolysine--tRNA ligase, C-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   5.3e-05     0.072     103     166 ..      31      99 ..      19     117 .. 0.79

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 5.3e-05
  TIGR02367 103 kpirifeiGscyrke..sdGsehleeftmlnlvelGspeeerrerlee.li...kevleelGideyelea 166
                 pi+     +c+rke  s+G + l  f  ++   l sp+++    ++e +i   ke+ + lGi  y++++
  MMETSP1137-20121227|937_1  31 LPIKYAGFSTCFRKEagSHGRDQLGXFEKIEQFVLTSPDGRDSWDMQExMIgncKEFYKSLGI-PYRVVN 99 
                589999999*****97779************999****9987766654233333889999999.888875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (277 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        95  (0.0231594); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.25u 0.13s 00:00:00.38 Elapsed: 00:00:00.52
# Mc/sec: 703.10
//
Query:       MMETSP1137-20121227|938_1  [L=282]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.3e-41  139.8   0.1    3.7e-41  139.1   0.1    1.3  1  TIGR02067 his_9_proposed: histidinol-phosphate phosphatase HisN
      1e-19   68.9   0.0    1.8e-19   68.2   0.0    1.3  1  TIGR01331 bisphos_cysQ: 3'(2'),5'-bisphosphate nucleotidase
    5.6e-08   29.8   0.0    0.00072   16.3   0.0    2.2  2  TIGR01330 bisphos_HAL2: 3'(2'),5'-bisphosphate nucleotidase


Domain annotation for each model (and alignments):
>> TIGR02067  his_9_proposed: histidinol-phosphate phosphatase HisN
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  139.1   0.1   2.7e-44   3.7e-41       7     251 ..      17     271 ..      11     272 .. 0.86

  Alignments for each domain:
  == domain 1    score: 139.1 bits;  conditional E-value: 2.7e-44
  TIGR02067   7 elaeaageailkyfrasdlkvdkksdktpVteADraaEeaireliaakfPddgilGEEfg...........eeeedaeyvWvlDPiDGTksFirGvPvwgtLiaLlekgkpvlGvisqPalgerfvaakgegallnggerelrvsevaklsdAvlvttspkaled.eeereafeklrrkarltryggdc.yayalvAsGrvdlvveaelspyDiaalipiieeAggvitdwkGkeaeeggeavaaanaalhdevlell 251
                + a+ ag ++ ++ +a d+++ k   k+  te D    +ai + ++a+ P++++lGEE              +  ++++ Wv+DPiDGT +F +G+P+ ++ i++++kg+ v+Gvi+ P+ +e+f a+ g++a+lng  +++rvs+ +++++ vl+ +sp +  +   + + + +l  ++r +r+ g++ +  a vA Gr     e++l+++D+aa ++++  Agg +t ++G+e+e  +++++++n   hde+le+l
  MMETSP1137-20121227|938_1  17 AAAREAGVIMRDRLGA-DVVETKAGFKDLLTEVDALCQQAIEAAVSARHPSHAFLGEESVkpgvdassaalGSVAESDWLWVVDPIDGTTNFASGLPLSAVSIGIACKGELVAGVIYDPFRDELFSATVGGEATLNG--EPMRVSKATRMQEVVLAAGSPPNPRSlAPALRGVVALSPRVRTVRMIGSAaIMMAWVACGRLTAYFEPDLNAWDTAAGAVLVRAAGGRVTGLDGSEFELRTRTLLCSNGDTHDELLEAL 271
                5567777777777777.56666666779******************************8623332221111233467899********************************************************7..8******************996655514455999***********98875278889************************************************************998 PP

>> TIGR01331  bisphos_cysQ: 3'(2'),5'-bisphosphate nucleotidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.2   0.0   1.3e-22   1.8e-19       3     238 ..      13     255 ..       9     262 .. 0.75

  Alignments for each domain:
  == domain 1    score: 68.2 bits;  conditional E-value: 1.3e-22
  TIGR01331   3 ekvikiakeAgeeilevyqkelaveekeD.esPvteADlaaeklilekLraltPdiPvlsEEeaeiglkere.......twkrfwLvDPlDGtkeFikrngeFtvniaLveegkPvlGvvyaPvlgvlyfaeagkaakkevddqalkkkikvreadsealavvisrshaeekvkelle......elgaelvvsvgsslkiclvAegsadiYpRlgptseWDtaAgeavlkeaGgeildldgkplaynkre 238
                ++ + +a+eAg  +++   +++ ve+k+  +   te D   ++ i   + a  P    l EE  + g+   +       +    w+vDP+DGt +F    +  +v i++  +g+ v+Gv+y P  ++l++a+ g  a+ + + + + k+++++e     +  ++++  +   +   l+          + ++ +++++ ++ vA g    Y      + WDtaAg +++++aGg+++ ldg+ ++   r 
  MMETSP1137-20121227|938_1  13 STACAAAREAGVIMRDRLGADV-VETKAGfKDLLTEVDALCQQAIEAAVSARHPSHAFLGEESVKPGVDASSaalgsvaESDWLWVVDPIDGTTNFASGLPLSAVSIGIACKGELVAGVIYDPFRDELFSATVGGEATLNGEPMRVSKATRMQE-----VVLAAGSPPNPRSLAPALRgvvalsPRVRTVRMIGSAAIMMAWVACGRLTAYFEP-DLNAWDTAAGAVLVRAAGGRVTGLDGSEFELRTRT 255
                5567778888877777776665.55555426678****************************988877665411111113345799***********************************************998888865534444443332.....33333443444444444444441323344566778999**************875.5689***********************99877765 PP

>> TIGR01330  bisphos_HAL2: 3'(2'),5'-bisphosphate nucleotidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0   5.3e-07   0.00072      84     173 ..      41     133 ..      19     147 .. 0.78
   2 !   11.6   0.0   1.4e-05      0.02     295     321 ..     224     250 ..     211     265 .. 0.84

  Alignments for each domain:
  == domain 1    score: 16.3 bits;  conditional E-value: 5.3e-07
  TIGR01330  84 saqvlgrvselvnetlaeaknykkdelvklksaeellkiidrgnseGGr...kGrhWvLDPiDGtkGflrGdq.yavaLaLienGkvvlgvlgC 173
                 +++l  v  l +++++ a + ++      ++ e +   +d ++   G        Wv+DPiDGt  f  G    av++++  +G  v gv+  
  MMETSP1137-20121227|938_1  41 FKDLLTEVDALCQQAIEAAVSARH-PSHAFLGEESVKPGVDASSAALGSvaeSDWLWVVDPIDGTTNFASGLPlSAVSIGIACKGELVAGVIYD 133
                556677777777777777777765.4556778888888888877776651114568***************75269************999965 PP

  == domain 2    score: 11.6 bits;  conditional E-value: 1.4e-05
  TIGR01330 295 iWDhaaGaviveeaGGvvtDaagkpLD 321
                 WD aaGav+v+ aGG vt   g +++
  MMETSP1137-20121227|938_1 224 AWDTAAGAVLVRAAGGRVTGLDGSEFE 250
                6*****************988776655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (282 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        92  (0.0224281); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.26u 0.15s 00:00:00.41 Elapsed: 00:00:00.44
# Mc/sec: 845.93
//
Query:       MMETSP1137-20121227|939_1  [L=435]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (435 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       132  (0.0321794); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.15s 00:00:00.44 Elapsed: 00:00:00.60
# Mc/sec: 956.92
//
Query:       MMETSP1137-20121227|940_1  [L=563]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.6e-22   76.0   0.0    2.8e-10   37.2   0.0    2.1  2  TIGR03219 salicylate_mono: salicylate 1-monooxygenase
    1.4e-18   64.8   0.0    3.3e-11   40.5   0.0    2.3  2  TIGR01988 Ubi-OHases: ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family
    1.1e-12   45.3   0.0    1.6e-06   25.0   0.0    2.5  2  TIGR01984 UbiH: 2-polyprenyl-6-methoxyphenol 4-hydroxylase
    2.8e-11   40.8   0.0    8.7e-07   26.0   0.0    2.3  2  TIGR01989 COQ6: ubiquinone biosynthesis monooxygenase COQ6
    2.6e-07   28.4   0.1    7.7e-07   26.9   0.1    1.8  1  TIGR02032 GG-red-SF: geranylgeranyl reductase family
     0.0045   13.7   0.0       0.01   12.5   0.0    1.5  1  TIGR02360 pbenz_hydroxyl: 4-hydroxybenzoate 3-monooxygenase
  ------ inclusion threshold ------
      0.019   11.4   0.0      0.026   10.9   0.0    1.1  1  TIGR00562 proto_IX_ox: protoporphyrinogen oxidase
      0.031   11.0   0.1      0.051   10.3   0.0    1.2  1  TIGR03452 mycothione_red: mycothione reductase


Domain annotation for each model (and alignments):
>> TIGR03219  salicylate_mono: salicylate 1-monooxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.8   0.0   7.4e-13   3.8e-10       2     167 ..      85     259 ..      84     290 .. 0.78
   2 !   37.2   0.0   5.5e-13   2.8e-10     265     372 ..     341     451 ..     316     461 .. 0.82

  Alignments for each domain:
  == domain 1    score: 36.8 bits;  conditional E-value: 7.4e-13
  TIGR03219   2 rvaiiGGGiaGvalalelskssh....lnvklfeaapafgevGaGvsfGanavraiegl..Glaeaykkvadrtsapwqdiwfewrrgsdasy..lgatiapgvGq.ssvhradfldallkklpegiakfgkkaksieeqaeevevsfedGteyradlligadGiksalrdyvle 167
                +v i G G+ G+ala  l+ ++     ++ ++ e + +f   G  + + +na+r+ +++  G+ ++ +++a  t +  + i    r+   a++   + + a ++     + r d+ ++ll+++  ++ ++   a+ ++++   v+v +edG + r d+ligadGi s++r  + +
  MMETSP1137-20121227|940_1  85 HVIISGAGVGGLALANCLAAQAEkgtpVHFTVLERTSEFKRFGGPIQLASNAMRSFREIdpGMYHTIESLATWTGNRTNGIKDGIRDEWYAKFdlKTPAEARQMPFtCVIDRPDLQNVLLERVQTSVRNSAAVASYSHDERGGVSVVLEDGETLRGDVLIGADGIWSSVRANMRN 259
                6889999******9988776553222289999************************9885578888889998887777766666666655554113344456666515679****************99999999999999****************************988754 PP

  == domain 2    score: 37.2 bits;  conditional E-value: 5.5e-13
  TIGR03219 265 afagwgdaarvllelieaptlwalhdlaelp.....gyvhGrvaliGdaahamlphqGaGaGqGledayllarlledtkleaedlpellevyddvrrerackvqrtsveaGel 372
                 f gw++ ++ +l + ++  +    dl + p     ++ +Gr +l+Gda ham+p  G G  q +eda +l++ l     + +++ e l+ y + r  r++ vq  s+ a ++
  MMETSP1137-20121227|940_1 341 LFTGWSEDIHSILRATKEHEIEQ-RDLYDRPpsvfqTWGDGRATLLGDAVHAMMPNLGQGGCQAIEDACVLSEELTRLD-SRSKIGEALKRYRARRLARSAAVQGLSRLASDI 451
                58999999999999988887754.4444443111115559********************************9997655.4578999999**************998877665 PP

>> TIGR01988  Ubi-OHases: ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.5   0.0   6.4e-14   3.3e-11       1     171 [.      85     257 ..      85     263 .. 0.71
   2 !   21.9   0.0   2.8e-08   1.4e-05     276     347 ..     378     446 ..     354     458 .. 0.88

  Alignments for each domain:
  == domain 1    score: 40.5 bits;  conditional E-value: 6.4e-14
  TIGR01988   1 divIvGgGlvGlalAlaLassa....dlkvalveakaaek......akspafdnRvsAlsaasiellekigvwdklekkraqpiqkirvsdagskgalefdaaevgaeaLgyvvenkvlqqaLlealqekknkvtllapaeveelere.sdaveltlsdgetleakLlvgADGanSkvrqaa 171
                +++I+G+G+ GlalA  La++a     ++ +++e++ + k      +    ++n + ++ +    ++++i+  +++  +r++ i++    +  +k++l+  a+ + + ++ +v++  +lq+ Lle++q++      + +a+v +++++ +  v + l+dgetl+ ++l+gADG  S vr  +
  MMETSP1137-20121227|940_1  85 HVIISGAGVGGLALANCLAAQAekgtPVHFTVLERTSEFKrfggpiQ---LASNAMRSFREIDPGMYHTIESLATWTGNRTNGIKDGIRDEWYAKFDLKTPAE-ARQMPFTCVIDRPDLQNVLLERVQTSV-----RNSAAVASYSHDeRGGVSVVLEDGETLRGDVLIGADGIWSSVRANM 257
                69*****************9997766666677777655555443321...23333334444444444444444555555556666655555555557777775.5599*******************9994.....4555555555543889***************************876 PP

  == domain 2    score: 21.9 bits;  conditional E-value: 2.8e-08
  TIGR01988 276 vaervaliGdAAhtvhPlAGQGlNlGlrDvaaLaevlaeavergedigslavLkrYererradnaallaatd 347
                 + r  l+GdA h + P  GQG    ++D+  L+e l++  +r  +ig  ++LkrY ++r a  aa++++ +
  MMETSP1137-20121227|940_1 378 GDGRATLLGDAVHAMMPNLGQGGCQAIEDACVLSEELTRLDSR-SKIG--EALKRYRARRLARSAAVQGLSR 446
                567999********************************87666.69**..89*******9999888877655 PP

>> TIGR01984  UbiH: 2-polyprenyl-6-methoxyphenol 4-hydroxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.0   0.0   3.2e-09   1.6e-06       2     168 ..      86     257 ..      85     263 .. 0.74
   2 !   17.5   0.0   6.1e-07   0.00031     262     340 ..     366     444 ..     354     454 .. 0.79

  Alignments for each domain:
  == domain 1    score: 25.0 bits;  conditional E-value: 3.2e-09
  TIGR01984   2 viivGgglvGlslAlaLsrks....klkialieaksaeaa......kssfdarsl.alsagskqileklgiweklekeatpikdihvsdrgafgalelra.eevalpaLGyVveladlkqallkrlaekkkiklyapaelkeierek.deaevkldneqkleakLlvaAdGanskvresl 168
                vii G+g+ Gl+lA+ L++++     ++ +++e +s  +        +s+  rs+  +  g ++++e+l  w    +++  ikd  + d+    + +l++ +e  +  +  V++  dl+++ll+r+++   ++    a ++++ +++ + + v l+++++l++++l+ AdG  s vr ++
  MMETSP1137-20121227|940_1  86 VIISGAGVGGLALANCLAAQAekgtPVHFTVLERTSEFKRfggpiqLASNAMRSFrEIDPGMYHTIESLATWTG--NRTNGIKD-GIRDE-WYAKFDLKTpAEARQMPFTCVIDRPDLQNVLLERVQTS--VRNS--AAVASYSHDErGGVSVVLEDGETLRGDVLIGADGIWSSVRANM 257
                9****************999988888999999988754432200212344556653467777777777777777..77777777.46666.56666666525677789****************87766..5544..66777766651569************************99865 PP

  == domain 2    score: 17.5 bits;  conditional E-value: 6.1e-07
  TIGR01984 262 aypLklviaeeqvkervvlignaAqtlhPiAgQGfNlGlrDvltLaevledar..kdlGeaallqeylkerkeDraatigl 340
                +y    ++ ++  + r  l+g+a + + P  gQG  + + D+  L+e l++ +  + +Ge  +l++y ++r +  aa+ gl
  MMETSP1137-20121227|940_1 366 LYDRPPSVFQTWGDGRATLLGDAVHAMMPNLGQGGCQAIEDACVLSEELTRLDsrSKIGE--ALKRYRARRLARSAAVQGL 444
                55555566667778899********************************98764477885..69***99987666555555 PP

>> TIGR01989  COQ6: ubiquinone biosynthesis monooxygenase COQ6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.0   0.0   1.7e-09   8.7e-07       2     189 ..      85     257 ..      84     278 .. 0.83
   2 !   12.5   0.0   2.2e-05     0.011     334     397 ..     381     441 ..     375     449 .. 0.85

  Alignments for each domain:
  == domain 1    score: 26.0 bits;  conditional E-value: 1.7e-09
  TIGR01989   2 DvvivGgGlvGlalAaalkknps.lkdkkvllldavdapklksrkyekksevysnRvssitpasielfkkigawdhiekdRikkfkklqvwdscskalieferkdvkeelafiiEndvilasllerlkeeksdnvkvknkaklksvtlpkkspndnsnlvkikledgetlktklliGADGanSkvRkaa 189
                 v+i+G+G+ GlalA  l+++ +     + ++l+   + ++k   +  + +  sn + s  +    +++ i+  ++ + +R++ +k     +  +k  ++  ++  + + +++i+   +++ ller++ +        n a + s++      +d+   v + ledgetl  ++liGADG  S vR  +
  MMETSP1137-20121227|940_1  85 HVIISGAGVGGLALANCLAAQAEkGTPVHFTVLER--TSEFKR--FGGPIQLASNAMRSFREIDPGMYHTIESLATWTGNRTNGIKDGIRDEWYAKFDLKTPAEARQMPFTCVIDRPDLQNVLLERVQTSV------RNSAAVASYS------HDERGGVSVVLEDGETLRGDVLIGADGIWSSVRANM 257
                59*************99998765145677888888..888866..999999999999987777777777777777778899999998888888899999998888899******************98766......5555555544......46788899*************************876 PP

  == domain 2    score: 12.5 bits;  conditional E-value: 2.2e-05
  TIGR01989 334 rvALvGDAAHrvHPLAGqGvNlGfsDvesLvkalaeavkeGadlGsvssLkkyererkakNval 397
                r+ L+GDA H + P  GqG    ++D+ +L + l++ + +  ++G+   Lk+y + r a+  a+
  MMETSP1137-20121227|940_1 381 RATLLGDAVHAMMPNLGQGGCQAIEDACVLSEELTR-LDSRSKIGE--ALKRYRARRLARSAAV 441
                889*******************************87.566688997..5899999988877665 PP

>> TIGR02032  GG-red-SF: geranylgeranyl reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.9   0.1   1.5e-09   7.7e-07       3     162 ..      86     265 ..      84     285 .. 0.66

  Alignments for each domain:
  == domain 1    score: 26.9 bits;  conditional E-value: 1.5e-09
  TIGR02032   3 vvvvGaGpaGssaAlrla...kkGlrVl..llekkelprekeCggalskraveelelpk................elivnevr.........kariispngekveieee...eeealvidRkefDelLaekAqeagaelllettvlsveiedekvkvevredekkevtakivigAdGakskvakklg.lkkekr 162
                v++ GaG  G ++A  la   +kG  V   +le++  ++ k  gg ++ +++    + +                       +           + + ++   ++++ e    + + vidR ++ ++L+e++q +   ++  ++v+s   +++ ++  v e + ++++++++igAdG  s v+ +++ ++++ +
  MMETSP1137-20121227|940_1  86 VIISGAGVGGLALANCLAaqaEKGTPVHftVLERT--SEFKRFGGPIQLASNAMRSFREidpgmyhtieslatwtG------NrtngikdgiRDEWYAKFD--LKTPAEarqMPFTCVIDRPDLQNVLLERVQTS---VRNSAAVASYSHDERGGVSVVLE-DGETLRGDVLIGADGIWSSVRANMRnQPAKGE 265
                89999999998888776422267777751155555..777888998888877777776666677776654443331......1333443333333333333..33333344468899****************99...77777787754444444444444.589******************99985555544 PP

>> TIGR02360  pbenz_hydroxyl: 4-hydroxybenzoate 3-monooxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.5   0.0     2e-05      0.01     279     348 ..     380     450 ..     372     478 .. 0.81

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 2e-05
  TIGR02360 279 GrlflaGdaahivpptGakGlnlaasdvaylyeallea.ykekdsaglerysakalarvwkaerfswwlts 348
                Gr  l Gda h + p   +G   a+ d  +l+e l++   ++k  ++l+ry a+ lar    + +s   + 
  MMETSP1137-20121227|940_1 380 GRATLLGDAVHAMMPNLGQGGCQAIEDACVLSEELTRLdSRSKIGEALKRYRARRLARSAAVQGLSRLASD 450
                8999********999999999*************988614677799************8877777765554 PP

>> TIGR00562  proto_IX_ox: protoporphyrinogen oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   5.1e-05     0.026       4      44 ..      85     131 ..      82     151 .. 0.86

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 5.1e-05
  TIGR00562   4 kvvvvGgGisGLciayalekerp...dvelvlvEak...dRvGGkiy 44 
                +v++ G+G+ GL++a  l+ + +   +v  +++E     +R GG i+
  MMETSP1137-20121227|940_1  85 HVIISGAGVGGLALANCLAAQAEkgtPVHFTVLERTsefKRFGGPIQ 131
                899***************998777899*******8633469999998 PP

>> TIGR03452  mycothione_red: mycothione reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0    0.0001     0.051     223     263 ..     208     249 ..     198     264 .. 0.86

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 0.0001
  TIGR03452 223 kfdvrlgrnvtaaeqdddg.vtlelddGstveadvllvatGr 263
                +  vr++ +v++ ++d++g v++ l+dG+t+++dvl+ a G 
  MMETSP1137-20121227|940_1 208 QTSVRNSAAVASYSHDERGgVSVVLEDGETLRGDVLIGADGI 249
                667999999*9999999887*****************99885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (563 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       114  (0.0277913); expected 82.0 (0.02)
Passed bias filter:                      105  (0.0255973); expected 82.0 (0.02)
Passed Vit filter:                        19  (0.00463189); expected 4.1 (0.001)
Passed Fwd filter:                         8  (0.00195027); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.48u 0.15s 00:00:00.63 Elapsed: 00:00:00.54
# Mc/sec: 1376.11
//
Query:       MMETSP1137-20121227|941_1  [L=140]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (140 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       122  (0.0297416); expected 82.0 (0.02)
Passed bias filter:                      107  (0.0260848); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.16s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 637.19
//
Query:       MMETSP1137-20121227|942_1  [L=918]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (918 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        60  (0.014627); expected 82.0 (0.02)
Passed bias filter:                       44  (0.0107265); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.52u 0.16s 00:00:00.68 Elapsed: 00:00:00.45
# Mc/sec: 2692.58
//
Query:       MMETSP1137-20121227|943_1  [L=283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (283 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        62  (0.0151146); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.14s 00:00:00.37 Elapsed: 00:00:00.47
# Mc/sec: 794.74
//
Query:       MMETSP1137-20121227|944_1  [L=564]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (564 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        64  (0.0156021); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.14s 00:00:00.49 Elapsed: 00:00:00.43
# Mc/sec: 1731.21
//
Query:       MMETSP1137-20121227|945_1  [L=179]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.4e-29  100.2   0.0      4e-28   96.2   0.0    1.9  1  TIGR02317 prpB: methylisocitrate lyase
    3.3e-24   83.5   0.0    4.3e-23   79.8   0.0    1.9  1  TIGR02319 CPEP_Pphonmut: carboxyvinyl-carboxyphosphonate phosphorylmutase
      3e-07   27.6   0.0    2.2e-05   21.5   0.0    2.1  1  TIGR02320 PEP_mutase: phosphoenolpyruvate phosphomutase
      4e-05   20.7   0.0    0.00027   18.0   0.0    1.9  1  TIGR02321 Pphn_pyruv_hyd: phosphonopyruvate hydrolase
  ------ inclusion threshold ------
      0.054    9.7   0.3       0.17    8.0   0.1    1.7  2  TIGR01346 isocit_lyase: isocitrate lyase


Domain annotation for each model (and alignments):
>> TIGR02317  prpB: methylisocitrate lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.2   0.0   4.9e-31     4e-28      94     277 ..       1     168 [.       1     174 [. 0.92

  Alignments for each domain:
  == domain 1    score: 96.2 bits;  conditional E-value: 4.9e-31
  TIGR02317  94 vkeleeagvaavhieDqvapkkCGhldgkelvskeemvkkikaavkakkdedfvliaRtDaraveGldaaieRakaYveaGadaiftealeseeefrefakavkvpllanmtefGktplltadeleelgykiviyPvtalRaalkaaekvyeelkkkGtqkelldklqtRkelYellgyedyek 277
                v+   +ag+aa+ ieDqv pk+CGh               + aa+++    +++++aRtDar+  Gl + ieR+ka+ e Ga + f ea +s+ee   +++av+ p +an+   G t +l  +ele lgy+++ yP+  l a+  a++++++ l+++G   + l      kel ++ g+e+y+ 
  MMETSP1137-20121227|945_1   1 VRGYAQAGLAAIMIEDQVSPKRCGHTA------------XVDAAKEGGD--NILILARTDARGKLGLSEGIERCKAFAEVGAHITFLEAPRSREEMAAYCDAVPGPKMANLLAGGLTXVLPPAELEALGYSLAAYPLDLLNASIVAMRTTLKGLRDEGKPPDELTL--PFKELQNVXGFEEYNX 168
                566789*******************74............5788888876..9**********************************************************************************************************99887753..4578888888888886 PP

>> TIGR02319  CPEP_Pphonmut: carboxyvinyl-carboxyphosphonate phosphorylmutase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.8   0.0   5.2e-26   4.3e-23      99     256 ..       2     145 ..       1     170 [. 0.91

  Alignments for each domain:
  == domain 1    score: 79.8 bits;  conditional E-value: 5.2e-26
  TIGR02319  99 refervgivgyhledqvnpkrcghlegkrlisteemtgkieaavearededftiiartdaresfgldeairrsreyvaagadcifleamldveemkrvrdeidapllanmveggktpwlttkelesigynlaiyplsgwmaaasvlrklftelreagt 256
                r + + g+    +edqv pkrcgh            t  ++aa e    +++ i+artdar  +gl e i r + +   ga   flea    eem    d +  p +an++ gg t  l   ele++gy la ypl    a+   +r  +  lr+ g 
  MMETSP1137-20121227|945_1   2 RGYAQAGLAAIMIEDQVSPKRCGH------------TAXVDAAKEGG--DNILILARTDARGKLGLSEGIERCKAFAEVGAHITFLEAPRSREEMAAYCDAVPGPKMANLLAGGLTXVLPPAELEALGYSLAAYPLDLLNASIVAMRTTLKGLRDEGK 145
                6678899999*************9............66789988764..5689************************************************************************************99999999***9999999885 PP

>> TIGR02320  PEP_mutase: phosphoenolpyruvate phosphomutase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.5   0.0   2.6e-08   2.2e-05     147     260 ..      34     143 ..       1     150 [. 0.85

  Alignments for each domain:
  == domain 1    score: 21.5 bits;  conditional E-value: 2.6e-08
  TIGR02320 147 qtdedfviiARvEslilekgledAleRaeaYaeaGADailiHsrkkdaeeileFarefrkkkkkvplvivPtsynevstdelaeagisvviyAnhllRaavaamqkvaeeilee 260
                +  ++++i+AR+++   + gl++ +eR++a+ae GA   ++ +  ++ ee+++++++     +k+  ++       ++  el+++g s++ y   ll a++ am+++ + + +e
  MMETSP1137-20121227|945_1  34 EGGDNILILARTDAR-GKLGLSEGIERCKAFAEVGAHITFLEA-PRSREEMAAYCDAVPG--PKMANLLAGGLTXVLPPAELEALGYSLAAYPLDLLNASIVAMRTTLKGLRDE 143
                3468999******95.799*****************9877765.56789*********99..77777777888889999***************************99988776 PP

>> TIGR02321  Pphn_pyruv_hyd: phosphonopyruvate hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.0   3.3e-07   0.00027     136     267 ..      24     153 ..       1     170 [. 0.79

  Alignments for each domain:
  == domain 1    score: 18.0 bits;  conditional E-value: 3.3e-07
  TIGR02321 136 gkvaaaaaarkdrdfv.viarvealiaglgqdeavrrglayeeagadailihskqktpdeilafvkawpgkkplvlvp.taypqlteadiaalskvgvviygnhairaavgavrevfarirrdqgirevdaalp 267
                g+ a   aa++  d + ++ar +a    lg  e + r +a+ e ga   ++ +  ++ +e+ a+  a pg k   l+       l  a++ al+   +  y    + a++ a+r  +  +r d+g    + +lp
  MMETSP1137-20121227|945_1  24 GHTAXVDAAKEGGDNIlILARTDAR-GKLGLSEGIERCKAFAEVGAHITFLEA-PRSREEMAAYCDAVPGPKMANLLAgGLTXVLPPAELEALGY-SLAAYPLDLLNASIVAMRTTLKGLR-DEGKPPDELTLP 153
                6677888888887765166888885.679*****************9887776.56889***********8776665505566789999999996.6889999999999999999887764.666555555555 PP

>> TIGR01346  isocit_lyase: isocitrate lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   0.1   0.00021      0.17     176     198 ..       6      27 ..       2      33 .. 0.88
   2 ?   -0.9   0.0      0.11        87     154     185 ..      42      74 ..      35      85 .. 0.62

  Alignments for each domain:
  == domain 1    score: 8.0 bits;  conditional E-value: 0.00021
  TIGR01346 176 erGaagvhledqlssekkCGhla 198
                ++G a++ +edq+s  k+CGh a
  MMETSP1137-20121227|945_1   6 QAGLAAIMIEDQVS-PKRCGHTA 27 
                799*********97.699***87 PP

  == domain 2    score: -0.9 bits;  conditional E-value: 0.11
  TIGR01346 154 vadada.GfGGvlavfkltkllierGaagvhle 185
                +a +da G  G+ + ++ +k++ e Ga  + le
  MMETSP1137-20121227|945_1  42 LARTDArGKLGLSEGIERCKAFAEVGAHITFLE 74 
                444444355566666666666666666655555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (179 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        51  (0.012433); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.25u 0.18s 00:00:00.43 Elapsed: 00:00:00.32
# Mc/sec: 738.31
//
Query:       MMETSP1137-20121227|946_1  [L=146]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (146 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       115  (0.0280351); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.16s 00:00:00.34 Elapsed: 00:00:00.36
# Mc/sec: 535.29
//
Query:       MMETSP1137-20121227|947_1  [L=799]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (799 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       138  (0.0336421); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.49u 0.16s 00:00:00.65 Elapsed: 00:00:00.47
# Mc/sec: 2243.81
//
Query:       MMETSP1137-20121227|949_1  [L=58]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        59  (0.0143832); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.12s 00:00:00.24 Elapsed: 00:00:00.28
# Mc/sec: 273.41
//
Query:       MMETSP1137-20121227|950_1  [L=374]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.1e-05   19.4   0.8      0.024   11.1   0.1    2.3  2  TIGR00990 3a0801s09: mitochondrial precursor proteins import receptor
     0.0036   15.7   8.8       0.07   11.6   0.9    3.8  4  TIGR02795 tol_pal_ybgF: tol-pal system protein YbgF


Domain annotation for each model (and alignments):
>> TIGR00990  3a0801s09: mitochondrial precursor proteins import receptor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.0   0.1    0.0002      0.41     555     578 ..     128     151 ..      99     163 .. 0.84
   2 !   11.1   0.1   1.2e-05     0.024     543     579 ..     286     322 ..     199     346 .. 0.82

  Alignments for each domain:
  == domain 1    score: 7.0 bits;  conditional E-value: 0.0002
  TIGR00990 555 qekvdealklferaaelarteeel 578
                 ++v+ a+ +fe+  +la+t +e+
  MMETSP1137-20121227|950_1 128 LGDVTTAISYFEKLNNLAQTSGEK 151
                489*******************98 PP

  == domain 2    score: 11.1 bits;  conditional E-value: 1.2e-05
  TIGR00990 543 iavitlaqlllqqekvdealklferaaelarteeelv 579
                 a  +l  l  qq++ ++a+ ++er  elar ++++v
  MMETSP1137-20121227|950_1 286 EACCALGVLYNQQGDYVNAVFFLERFFELARSMGDRV 322
                35667788999***********************998 PP

>> TIGR02795  tol_pal_ybgF: tol-pal system protein YbgF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.0   0.0      0.14   2.8e+02      80     108 ..      62      90 ..      54      95 .. 0.87
   2 !    5.1   0.0    0.0035       7.2      73     104 ..     112     143 ..      99     157 .. 0.84
   3 !   11.6   0.9   3.4e-05      0.07      36     101 ..     199     270 ..     193     274 .. 0.80
   4 ?    0.9   0.0     0.071   1.4e+02      62      97 ..     271     306 ..     268     314 .. 0.64

  Alignments for each domain:
  == domain 1    score: -0.0 bits;  conditional E-value: 0.14
  TIGR02795  80 lklgeslqelgqkekAkktlqevikrYPk 108
                l ++e++ + g++++  + ++++++ +++
  MMETSP1137-20121227|950_1  62 LSQAEVARRRGDTKAVYAAYEQLAELFSE 90 
                77899999999****9*****99998875 PP

  == domain 2    score: 5.1 bits;  conditional E-value: 0.0035
  TIGR02795  73 ekapdallklgeslqelgqkekAkktlqevik 104
                e  ++a+  lg++ q+lg+ ++A ++++++ +
  MMETSP1137-20121227|950_1 112 EGEAKAMRALGVAHQALGDVTTAISYFEKLNN 143
                56688999*******************99865 PP

  == domain 3    score: 11.6 bits;  conditional E-value: 3.4e-05
  TIGR02795  36 tlapnAqYwlGealya...kkkykdAaka...flevvkkypksekapdallklgeslqelgqkekAkktlqe 101
                +++  A++ lG+a  +    +++++A ++   +l++ ++ +++e    a + l++ +q+l+++++++++lq+
  MMETSP1137-20121227|950_1 199 SMVSKAHFMLGQAHEKlaeMSHLNEAVANykpYLTLCEQAEDNEGQGAACFALARTYQRLENHSTSQQYLQR 270
                56789******99655111566788887712256888999999**************************996 PP

  == domain 4    score: 0.9 bits;  conditional E-value: 0.071
  TIGR02795  62 flevvkkypksekapdallklgeslqelgqkekAkk 97 
                +l++ ++  k +  ++a   lg++++++g+  +A  
  MMETSP1137-20121227|950_1 271 YLQLAEATGKPSSQAEACCALGVLYNQQGDYVNAVF 306
                666666666666677777777777777776666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (374 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       136  (0.0331546); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.30u 0.14s 00:00:00.44 Elapsed: 00:00:00.44
# Mc/sec: 1121.91
//
Query:       MMETSP1137-20121227|951_1  [L=146]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (146 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       183  (0.0446124); expected 82.0 (0.02)
Passed bias filter:                      129  (0.0314481); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.19s 00:00:00.37 Elapsed: 00:00:00.34
# Mc/sec: 566.78
//
Query:       MMETSP1137-20121227|952_1  [L=66]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (66 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        33  (0.00804486); expected 82.0 (0.02)
Passed bias filter:                       29  (0.00706972); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.13s 00:00:00.23 Elapsed: 00:00:00.24
# Mc/sec: 362.97
//
Query:       MMETSP1137-20121227|953_1  [L=529]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      3e-12   43.0   0.1    3.8e-12   42.7   0.0    1.1  1  TIGR03903 TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
    1.2e-06   26.0   0.0    1.7e-06   25.4   0.0    1.2  1  TIGR03724 arch_bud32: Kae1-associated kinase Bud32


Domain annotation for each model (and alignments):
>> TIGR03903  TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.7   0.0   1.8e-15   3.8e-12       2     160 ..     146     302 ..     145     332 .. 0.75

  Alignments for each domain:
  == domain 1    score: 42.7 bits;  conditional E-value: 1.8e-15
  TIGR03903   2 tghkvaikllRedaa...eeerlvaRFrReialCarLshPnivaLlDsG.eaedgllFavFeyveGrtl.revLaadGaLpaaetgrLmlqvLDalaaahdaGvvhRDLkPqnimvsaadveshakvLDFGigaLlpgve.dadeatltrttevlGsPaYaaPeq 160
                tg+ vaik + +d++   + + l aR  R ++     s Pn++   D   +a       v e   G  l  +v+    +L+ +e   L  q+L ++   h++Gv hRDLk +n ++  +    + + +DFG++ + p +    de ++t  te +Gs +Y aPe 
  MMETSP1137-20121227|953_1 146 TGETVAIKRVNSDQPxsvQGAELEARALRRLQ-----SSPNVIGFRDYMhQASSRTHMIVMEAAMGGDLySHVMECRRPLSEEESRTLFSQMLRGVEQMHARGVAHRDLKLENAVLDDR---GEVRWIDFGLAHVFPRCAyGHDEYEVTPLTEPVGSRPYMAPEV 302
                77888888888886644444444444444443.....469999998865155566667899988777662679999*************************************988555...566789********986525699******************93 PP

>> TIGR03724  arch_bud32: Kae1-associated kinase Bud32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.4   0.0   8.5e-10   1.7e-06      69     138 ..     194     272 ..     166     284 .. 0.81

  Alignments for each domain:
  == domain 1    score: 25.4 bits;  conditional E-value: 8.5e-10
  TIGR03724  69 peekkivmeyiegkklkdlleekel........ellkevGelvgklHkagivhgDlttsNiivk.ddklyliDfGLgkk 138
                 ++  ivme   g +l   + e +          l++++ + v ++H  g++h Dl  +N +++  +++  iDfGL+++
  MMETSP1137-20121227|953_1 194 SRTHMIVMEAAMGGDLYSHVMECRRplseeesrTLFSQMLRGVEQMHARGVAHRDLKLENAVLDdRGEVRWIDFGLAHV 272
                556678888877777766655544456777777999***************************6267899******985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (529 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.18s 00:00:00.56 Elapsed: 00:00:00.46
# Mc/sec: 1517.87
//
Query:       MMETSP1137-20121227|960_1  [L=152]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (152 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       141  (0.0343735); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.18s 00:00:00.36 Elapsed: 00:00:00.34
# Mc/sec: 590.07
//
Query:       MMETSP1137-20121227|961_1  [L=284]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.5e-19   64.6   0.0    1.1e-18   64.4   0.0    1.0  1  TIGR03903 TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
    1.6e-08   32.1   0.0    2.4e-08   31.5   0.0    1.2  1  TIGR03724 arch_bud32: Kae1-associated kinase Bud32


Domain annotation for each model (and alignments):
>> TIGR03903  TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.4   0.0   5.2e-22   1.1e-18      18     237 ..       8     211 ..       1     233 [. 0.86

  Alignments for each domain:
  == domain 1    score: 64.4 bits;  conditional E-value: 5.2e-22
  TIGR03903  18 eerlvaRFrReialCarLshPnivaLlDsGeaedgllFavFeyveGrtlrevLaadGaLpaaetgrLmlqvLDalaaahdaGvvhRDLkPqnimvsaadveshakvLDFGigaLlpgvedadeatltrttevlGsPaYaaPeqLRgepvtaksDlYaWGLivleCLtGkrvvqGasvaevlykqLsPvdvslPsaiaghpLgevLRkalnkdvrqRaasa 237
                + ++v     e ++ + +shP iv      + e   l+   +yv+G tl   L  +   +a++t    +q++ al   h+ G+v+RDL+P+n+++ +++     k++DFG +    +v             ++G+P+Y aPe +       + D +a G+++ e + G +    +    +++k Ls  ++ +P   + h   +++Rk l  d  +R  s 
  MMETSP1137-20121227|961_1   8 RLKQVDHVMSERSILQDVSHPFIVVAYHTFQDER-NLYMLMDYVAGGTLISHLRKQAKFSAEHTRFYAAQIVMALQYLHQLGIVYRDLRPENLLLDTSGY---MKMVDFGYAKRINDVTW----------TLVGTPEYLAPEIIQSKGHNKAVDWWALGILIYEMMAGYPPYYDENPFGIYQKILSG-KLEFPRHFDVHS-RDLIRKLLTADRTKRIGSL 211
                55677777789999999*******9888777666.89**********************************************************99886...6899***8765444333..........479**************************************9999999999999996.588999999887.5788888888877776665 PP

>> TIGR03724  arch_bud32: Kae1-associated kinase Bud32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.5   0.0   1.2e-11   2.4e-08      46     142 ..      17     121 ..       7     159 .. 0.85

  Alignments for each domain:
  == domain 1    score: 31.5 bits;  conditional E-value: 1.2e-11
  TIGR03724  46 kEarllseakkagvntPvvydvdpeekkivmeyiegkklkdlleekel.......ellkevGelvgklHkagivhgDlttsNiiv.kddklyliDfGLgkkskev 142
                +E  +l+++ +  + + +  + d+++  ++m+y+ g +l   l+++ +        ++ ++  ++  lH+ giv+ Dl ++N+++ +++ + ++DfG +k+ ++v
  MMETSP1137-20121227|961_1  17 SERSILQDVSHPFIVVAYHTFQDERNLYMLMDYVAGGTLISHLRKQAKfsaehtrFYAAQIVMALQYLHQLGIVYRDLRPENLLLdTSGYMKMVDFGYAKRINDV 121
                566777777777777777788899999************999999887899887667889999999*******************5577788******9987765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (284 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        94  (0.0229157); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.28u 0.16s 00:00:00.44 Elapsed: 00:00:00.50
# Mc/sec: 749.70
//
Query:       MMETSP1137-20121227|962_1  [L=87]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.012   13.3   0.1       0.02   12.6   0.1    1.4  1  TIGR02383 Hfq: RNA chaperone Hfq


Domain annotation for each model (and alignments):
>> TIGR02383  Hfq: RNA chaperone Hfq
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.1   4.8e-06      0.02      13      45 ..      21      55 ..      14      65 .. 0.70

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 4.8e-06
  TIGR02383 13 kekievtvfLv..nGvklkGviesfDkFtvllese 45
               ++k+ v++++     ++++G+i+ fD+++ l+ ++
  MMETSP1137-20121227|962_1 21 QNKTRVQIWIFenTDLRIEGRIVGFDEYMNLVLDD 55
               455555555551156899**********8666544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (87 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        98  (0.0238908); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.28
# Mc/sec: 410.11
//
Query:       MMETSP1137-20121227|963_1  [L=127]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (127 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       143  (0.034861); expected 82.0 (0.02)
Passed bias filter:                      108  (0.0263286); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.16s 00:00:00.31 Elapsed: 00:00:00.31
# Mc/sec: 540.73
//
Query:       MMETSP1137-20121227|964_1  [L=81]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (81 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        44  (0.0107265); expected 82.0 (0.02)
Passed bias filter:                       44  (0.0107265); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.14s 00:00:00.28 Elapsed: 00:00:00.26
# Mc/sec: 411.20
//
Query:       MMETSP1137-20121227|965_1  [L=1380]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1380 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       233  (0.0568016); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.77u 0.15s 00:00:00.92 Elapsed: 00:00:00.90
# Mc/sec: 2023.83
//
Query:       MMETSP1137-20121227|966_1  [L=275]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      2e-10   38.4   0.0    4.2e-10   37.4   0.0    1.6  1  TIGR00011 YbaK_EbsC: YbaK/EbsC protein


Domain annotation for each model (and alignments):
>> TIGR00011  YbaK_EbsC: YbaK/EbsC protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.4   0.0     1e-13   4.2e-10      75     142 ..     188     257 ..     118     263 .. 0.82

  Alignments for each domain:
  == domain 1    score: 37.4 bits;  conditional E-value: 1e-13
  TIGR00011  75 lgekk..vemidlkdaekvtGYvrGGisPlGqkkklptyidesakqletilvsaGkrGlqielapedllk 142
                lg k+  ++m++ ++ ++++GY + +++PlG+++ +p++i  s+++l+ti++ aG+  l++ l++++ ++
  MMETSP1137-20121227|966_1 188 LGRKQynMRMVEEETSRRLSGYEHNAVTPLGMTTPMPIIISSSIASLDTIWLGAGEVDLKLGLKVDEFVS 257
                45555115688999999***********************************************998775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (275 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        85  (0.0207216); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.23u 0.19s 00:00:00.42 Elapsed: 00:00:00.32
# Mc/sec: 1134.28
//
Query:       MMETSP1137-20121227|968_1  [L=346]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (346 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        78  (0.0190151); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.15s 00:00:00.41 Elapsed: 00:00:00.33
# Mc/sec: 1383.89
//
Query:       MMETSP1137-20121227|969_1  [L=98]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (98 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       117  (0.0285227); expected 82.0 (0.02)
Passed bias filter:                      111  (0.02706); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.13s 00:00:00.28 Elapsed: 00:00:00.28
# Mc/sec: 461.96
//
Query:       MMETSP1137-20121227|970_1  [L=349]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (349 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        60  (0.014627); expected 82.0 (0.02)
Passed bias filter:                       41  (0.00999512); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.15s 00:00:00.41 Elapsed: 00:00:00.34
# Mc/sec: 1354.83
//
Query:       MMETSP1137-20121227|971_1  [L=264]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (264 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       123  (0.0299854); expected 82.0 (0.02)
Passed bias filter:                      104  (0.0253535); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.18s 00:00:00.41 Elapsed: 00:00:00.46
# Mc/sec: 757.50
//
Query:       MMETSP1137-20121227|972_1  [L=488]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (488 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       190  (0.0463189); expected 82.0 (0.02)
Passed bias filter:                      124  (0.0302292); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.14s 00:00:00.50 Elapsed: 00:00:00.71
# Mc/sec: 907.19
//
Query:       MMETSP1137-20121227|973_1  [L=284]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (284 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        49  (0.0119454); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.12s 00:00:00.35 Elapsed: 00:00:00.33
# Mc/sec: 1135.91
//
Query:       MMETSP1137-20121227|974_1  [L=85]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (85 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        28  (0.00682594); expected 82.0 (0.02)
Passed bias filter:                       23  (0.00560702); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.17s 00:00:00.28 Elapsed: 00:00:00.40
# Mc/sec: 280.48
//
Query:       MMETSP1137-20121227|975_1  [L=523]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.8e-06   23.3   4.1    2.5e-05   20.2   0.0    2.7  3  TIGR02917 PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein
    0.00033   18.1   3.6      0.031   11.6   1.2    3.4  3  TIGR02521 type_IV_pilW: type IV pilus biogenesis/stability protein PilW


Domain annotation for each model (and alignments):
>> TIGR02917  PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0     0.048        99     613     633 ..      34      54 ..      18      81 .. 0.47
   2 !   20.2   0.0   1.2e-08   2.5e-05     478     643 ..     137     305 ..     125     359 .. 0.68
   3 !    2.8   0.7    0.0022       4.4     129     171 ..     387     429 ..     377     437 .. 0.91

  Alignments for each domain:
  == domain 1    score: -1.7 bits;  conditional E-value: 0.048
  TIGR02917 613 aakdlkkavesfkkllelqpd 633
                 a++ + a++ fk ll+++p 
  MMETSP1137-20121227|975_1  34 RAGQTDTARRIFKFLLQQAPW 54 
                233333333334334333333 PP

  == domain 2    score: 20.2 bits;  conditional E-value: 1.2e-08
  TIGR02917 478 kkdlakAreafekALkiepdffpAlanL..ArldlqekniddAkqrfekvlaidpknlkallaL..aelaarkgneeeavallekaaekdpkelepalaLaqyylskgelkkalaileeaadlapdspellellgraqlaakdlkkavesfkkllelqpdsalallllad 643
                +++l++Ar+a+ k+     +++   + L  Ar +l   + + +++ +e++ +++p   +a+  L  ++l +  gn e++ +ll  a + + +e +  l+ +   l++++ ++al+ +++a+++++ + +l+++l ++  a + ++  + +f+++l + p+s++   + a 
  MMETSP1137-20121227|975_1 137 NGNLQRARAAYVKSVATCAANLRWKVWLggARTELCHSQFAVSQALLEQAYKESPPKTRAIVMLeqSRLHELCGNAEQSRKLLRGARKTNRQEWKVFLESVLLELRSQDMQRALKEAHQALKVHRGTGRLWAVLIQLEHAHG-VRRQLGVFQQALLEVPKSGEVWCEGAR 305
                5555555555555555555555444444336666666777777888888888888888876555336777777888888888888888888888888887777788888888888888888888888888888877776666.445577888888888888777666555 PP

  == domain 3    score: 2.8 bits;  conditional E-value: 0.0022
  TIGR02917 129 alrglAaLglgeleeAqksleqAlaiapksleaklglAqlala 171
                +++g ++L ++el e ++ +e+A + a+++  +++++A +a+a
  MMETSP1137-20121227|975_1 387 VMQGATELLQRELREYRHVYESAVKRAETAEFSQAASAAVAAA 429
                679***********************************99986 PP

>> TIGR02521  type_IV_pilW: type IV pilus biogenesis/stability protein PilW
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    2.8   0.0    0.0078        16     132     188 ..      19      75 ..       5      81 .. 0.80
   2 !   11.6   1.2   1.5e-05     0.031     109     229 ..     171     290 ..     130     293 .. 0.81
   3 ?    0.7   0.0     0.033        68     152     221 ..     318     387 ..     312     400 .. 0.75

  Alignments for each domain:
  == domain 1    score: 2.8 bits;  conditional E-value: 0.0078
  TIGR02521 132 eqparsyeNaglcalkagdtekaekyltralkidpkrpesllelaelklkkgqyaeA 188
                +q +r++   +l  ++ag+t+ a+  ++ +l++ p + +   e  + +    +++eA
  MMETSP1137-20121227|975_1  19 NQSWRTLLEGALLEARAGQTDTARRIFKFLLQQAPWYGPVWHEACRFEQRCNHMQEA 75 
                577888889999999****************99999888777777666666666555 PP

  == domain 2    score: 11.6 bits;  conditional E-value: 1.5e-05
  TIGR02521 109 LcqqkkyeeAeqqfeaAiedpkYeqparsyeNaglcalkagdtekaekyltralkidpkrpesllelaelklkkgqyaeAralleryqqtveqtaesLwLgiriakalgdaaaakeyeaqL 229
                Lc+ + +   ++ +e+A+++   +++a++           g++e+ +k l+ a k ++++ + +le + l+l  +++++A +  ++  ++   t +  ++ i++++a g + +   +++ L
  MMETSP1137-20121227|975_1 171 LCHSQFAV-SQALLEQAYKESPPKTRAIVMLEQSRLHELCGNAEQSRKLLRGARKTNRQEWKVFLESVLLELRSQDMQRALKEAHQALKVHRGTGRLWAVLIQLEHAHGVRRQLGVFQQAL 290
                78776444.489999***99999999999999999999***************************************99999888887777777777778899999999888888777766 PP

  == domain 3    score: 0.7 bits;  conditional E-value: 0.033
  TIGR02521 152 ekaekyltralkidpkrpesllelaelklkkgqyaeAralleryqqtveqtaesLwLgiriakalgdaaa 221
                + a++ l  a++  p++ +s+ e  +l++  +   e  + l +    +e++  +Lw   +    l  ++ 
  MMETSP1137-20121227|975_1 318 KAAHNFLDFAIEFTPQYGDSFIEYLRLQMLMKAPEEEIERLWQLCINAEPNYGTLWFHCKSSVLLTTRQV 387
                6678888899999999999999999999998888777777777777778888888887776665555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (523 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       138  (0.0336421); expected 82.0 (0.02)
Passed bias filter:                       98  (0.0238908); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.12s 00:00:00.52 Elapsed: 00:00:00.79
# Mc/sec: 873.80
//
Query:       MMETSP1137-20121227|976_1  [L=91]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (91 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        55  (0.0134081); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.14s 00:00:00.28 Elapsed: 00:00:00.27
# Mc/sec: 444.85
//
Query:       MMETSP1137-20121227|977_1  [L=406]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (406 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        89  (0.0216967); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.16s 00:00:00.46 Elapsed: 00:00:00.48
# Mc/sec: 1116.41
//
Query:       MMETSP1137-20121227|979_1  [L=115]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (115 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        64  (0.0156021); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.16s 00:00:00.32 Elapsed: 00:00:00.24
# Mc/sec: 632.45
//
Query:       MMETSP1137-20121227|980_1  [L=456]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (456 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       112  (0.0273038); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.22s 00:00:00.49 Elapsed: 00:00:00.44
# Mc/sec: 1367.89
//
Query:       MMETSP1137-20121227|981_1  [L=471]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (471 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        87  (0.0212092); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.21s 00:00:00.48 Elapsed: 00:00:00.42
# Mc/sec: 1480.16
//
Query:       MMETSP1137-20121227|982_1  [L=228]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00027   18.0   2.8    0.00067   16.7   1.9    1.7  1  TIGR03921 T7SS_mycosin: type VII secretion-associated serine protease mycosin


Domain annotation for each model (and alignments):
>> TIGR03921  T7SS_mycosin: type VII secretion-associated serine protease mycosin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   1.9   1.6e-07   0.00067       1      41 [.     132     176 ..     132     216 .. 0.82

  Alignments for each domain:
  == domain 1    score: 16.7 bits;  conditional E-value: 1.6e-07
  TIGR03921   1 leleeawklstG.agvtVAViDtGvd.rhPrLpgev..aGgDlve 41 
                le+eeaw ++ G a v++AV+D+Gvd +h +L++++  + g++ +
  MMETSP1137-20121227|982_1 132 LEMEEAWGITGGsAEVVIAVVDSGVDmDHLDLRRNQwiNEGEICD 176
                5789******99356889***************998887777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (228 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        91  (0.0221843); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.17u 0.22s 00:00:00.39 Elapsed: 00:00:00.36
# Mc/sec: 835.93
//
Query:       MMETSP1137-20121227|983_1  [L=611]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   1.2e-150  500.6   0.0    3.5e-98  327.4   0.0    2.0  2  TIGR00398 metG: methionine--tRNA ligase
    2.3e-40  136.2   0.0    5.5e-27   91.9   0.0    2.9  2  TIGR00422 valS: valine--tRNA ligase
      6e-34  115.2   0.0    1.2e-24   84.3   0.0    2.6  3  TIGR00392 ileS: isoleucine--tRNA ligase
    2.6e-25   86.5   0.0    3.3e-15   53.1   0.0    2.2  2  TIGR00396 leuS_bact: leucine--tRNA ligase
    8.4e-23   78.1   0.1    7.2e-14   48.6   0.0    2.5  3  TIGR00395 leuS_arch: leucine--tRNA ligase
    4.9e-12   43.5   0.0    1.4e-07   28.7   0.0    2.1  2  TIGR00435 cysS: cysteine--tRNA ligase
     0.0022   14.7   0.0        0.4    7.2   0.0    2.2  2  TIGR03447 mycothiol_MshC: cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase


Domain annotation for each model (and alignments):
>> TIGR00398  metG: methionine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  171.4   0.0   1.2e-53   6.8e-51       2     140 ..     117     256 ..     116     259 .. 0.96
   2 !  327.4   0.0  6.1e-101   3.5e-98     176     511 ..     261     596 ..     257     607 .. 0.95

  Alignments for each domain:
  == domain 1    score: 171.4 bits;  conditional E-value: 1.2e-53
  TIGR00398   2 lvTtalyYangkpHlGhllttilaDvlarykrlrGeevlfvtgtDehGtkielkAesegltPkelvdklaeefkklfkllnisfdrFirTtdeehkeivqkifekllenGyiyekeikglYcvecesflpdr.yvegecp 140
                ++Tt++yY+ng+pH+Gh++t+++ D++ar++rl G++vlf+tgtDehG+k+e++A + g tP++++d+++e f+ l+ l++ s d+FirTt+++hk+ +q +++kl+e G+iy +e++g+Y+v++e f+++   v+g+ p
  MMETSP1137-20121227|983_1 117 FITTPIYYVNGQPHIGHVYTSLACDIVARFSRLDGYDVLFLTGTDEHGQKVEQSASAAGKTPQAFADEVSETFRALLPLYDFSCDQFIRTTEQRHKDAAQALWRKLVESGDIYLGEYEGWYSVRDEAFYTEDeLVDGKAP 256
                7********************************************************************************************************************************98756777665 PP

  == domain 2    score: 327.4 bits;  conditional E-value: 6.1e-101
  TIGR00398 176 pelkeeehyFfrlskfekkleelikknpeskklasevknvlenflkegLkdlaitRdlvewGipvPkd...........pnkvvYVWldAligYisalseeknatekfkkywkekedaelihliGkdivrfHtiywPamllalelklpkqlvahgyltvegkkmSkSkgnvvdpedllarygadilRYyllkevplekDldfsledfvervNaelvnklgNllnRtlgfikkyfegklksvkeaseedekllkkieealekidealekfefkkaleeilklvsegnklideekPwelakee.ekekellavllelirvlsillkpilpklsekilkllnleleadkll 511
                +e+  e++yFfrls++++kle++ik n++++++ s++++vl  f+k+gL+dl+i+R+++ wG+ vP++           p++++YVWldAl +Yisal++   ++e+f+k+w+++     +h++Gkdi+rfH+iywPa+l+a++l+lp++l+ahg++  +g+kmSkS+gnv+dp +l++ ygad +RY++++ v +++D+dfs  +++e+vNa+l+n+lgNl++Rt +f +k ++ +++   e ++ d+ ll+++      ++e ++k+++++  +++ +l++++nk+id ++Pw+l+k + e+ +++l vlle++r ++il++p+ p+++ +il++l + +e+ +++
  MMETSP1137-20121227|983_1 261 VEWVAESSYFFRLSRWQEKLEAHIKANDDFIQPISRRNEVLA-FMKDGLRDLSISRTTFGWGVAVPEAettaathdadaPKHIMYVWLDALTNYISALGYPDTDSESFRKFWPAH-----LHMVGKDILRFHAIYWPAFLMAAQLPLPSKLFAHGWWMNNGEKMSKSLGNVIDPVKLVETYGADQVRYFMISDVAFGSDGDFSDRRLIETVNAKLANELGNLAYRTTSFSHKHCDCSIPIPAELNADDRALLDSA------AAEHIDKLQLHRYTQALSALTQDANKYIDVQAPWALKKSDpERMRTVLWVLLETLRSIAILMQPVTPSIAANILDQLAVPAEQRQFS 596
                5778899******************************99665.***********************9999999999999***********************************9.....*************************************************************************************************************************99888888888764......567889999999999999**********************9**************************************99977764 PP

>> TIGR00422  valS: valine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.1   0.0   4.4e-14   2.6e-11      36     101 ..     117     178 ..     105     202 .. 0.84
   2 !   91.9   0.0   9.4e-30   5.5e-27     349     702 ..     259     589 ..     241     598 .. 0.74

  Alignments for each domain:
  == domain 1    score: 40.1 bits;  conditional E-value: 4.4e-14
  TIGR00422  36 iiviPPPnvTGslHiGHalevslqDiliRykrmkgknvlflpGlDhagiatqvvvEkklkaegktk 101
                 i++P  +v G+ HiGH+++    Di++R+ r++g++vlfl+G+D +g    ++vE+ + a gkt 
  MMETSP1137-20121227|983_1 117 FITTPIYYVNGQPHIGHVYTSLACDIVARFSRLDGYDVLFLTGTDEHG----QKVEQSASAAGKTP 178
                5889999****************************************9....56677666666655 PP

  == domain 2    score: 91.9 bits;  conditional E-value: 9.4e-30
  TIGR00422 349 tvvEpllskQWfVkvekLadkaleaaekegeikfvPkrfekeylsWlee.lkdWcISRQli.wghriPvwyeketgevvvakeeaeekektklgskeleqdeDVLDTWfsSslwplstlgWpeek.kdlkkfyptsllvtgfDIiffWvarmillslaltgqvPfkevlihglvrdeqgrKmSKSlgNvidPldliekyGaDalRftlaalvaaGrDinldlkkvea..arkFlnKlwnasrfvlmnledkkeleeg.eeklsladrwilsklnelikevrealdkyrfaeaakalyeFiWndfcdwyiElvKkel.yeeeeeekkeakstlaivLdkllrllhpfiPflteeiyqklkek 702
                ++vE + ++ +f ++++ ++k+ + ++  ++  + P + ++e+l+++++ l+d  ISR  + wg  +P     +t++ +                 +    + ++  W++     +s lg+p+++ + ++kf+p++l + g DI++f +++     +a    +P ++++ hg    ++g+KmSKSlgNvidP++l+e yGaD +R+++++ va G+D  ++ +++ +  ++k +n l n ++ +    +++++ + +   +l+  dr +l    +   ++ e++dk +++  ++al      + +++yi++  +   ++ + e+ +++ ++l  +L ++  l++p++P ++ +i ++l+  
  MMETSP1137-20121227|983_1 259 APVEWVAESSYFFRLSRWQEKLEAHIKA-NDDFIQPISRRNEVLAFMKDgLRDLSISRTTFgWGVAVPEAE--TTAATH-----------------DADAPKHIMYVWLDALTNYISALGYPDTDsESFRKFWPAHLHMVGKDILRFHAIYWPAFLMAAQLPLP-SKLFAHGWWM-NNGEKMSKSLGNVIDPVKLVETYGADQVRYFMISDVAFGSDGDFSDRRLIEtvNAKLANELGNLAYRTTSFSHKHCDCSIPiPAELNADDRALLD---S---AAAEHIDKLQLHRYTQALSAL--TQDANKYIDVQAPWAlKKSDPERMRTVLWVLLETLRSIAILMQPVTPSIAANILDQLAVP 589
                6677777777777777777776666663.455566777777777777655667777776544666655211..111111.................22334568889***************999899*********************998666665555555.5689999865.68**********************************************86512567899988854444333333444443303456666665544...3...566788888888888888887..5679*****9987650555688899999*************************9998765 PP

>> TIGR00392  ileS: isoleucine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.7   0.0   2.9e-10   1.7e-07      46     100 ..     124     178 ..     113     228 .. 0.78
   2 ?   -1.0   0.0      0.13        76     413     476 ..     258     325 ..     256     335 .. 0.75
   3 !   84.3   0.0   2.1e-27   1.2e-24     528     796 ..     335     593 ..     322     603 .. 0.87

  Alignments for each domain:
  == domain 1    score: 27.7 bits;  conditional E-value: 2.9e-10
  TIGR00392  46 yanGeihlghalnkilKDiilryktmqGfkverkpGWDtHGLPiElkvekklgie 100
                y nG++h+gh+  +   Di+ r+ ++ G++v +  G D HG  +E++ +   ++ 
  MMETSP1137-20121227|983_1 124 YVNGQPHIGHVYTSLACDIVARFSRLDGYDVLFLTGTDEHGQKVEQSASAAGKTP 178
                89*******************************************9987655444 PP

  == domain 2    score: -1.0 bits;  conditional E-value: 0.13
  TIGR00392 413 kkPviyrateqwFikvkeikeelleeikkv.kwv.pekg.ekRlkkmlenrkdWciSRqRy.WGvPip 476
                  Pv + a +++F ++++ +e+l ++ik    ++ p +  ++ l+ m    +d  iSR  + WGv +p
  MMETSP1137-20121227|983_1 258 GAPVEWVAESSYFFRLSRWQEKLEAHIKANdDFIqPISRrNEVLAFMKDGLRDLSISRTTFgWGVAVP 325
                6799999***************9999987624662334434445555556899999998755999777 PP

  == domain 3    score: 84.3 bits;  conditional E-value: 2.1e-27
  TIGR00392 528 eykreedvlDvWfdSGsspyavleyklen.ekkkevfpadlilEGsDQtrGWFyssllisvalsdkapy.kkvithGfvldekGrKMSKslgNvvdpekvikkyGaDvlRlyvass.dpaedlkfseei.lkevaekllkilnntlrFlllyanLdkfkpeekslkveklkelDrwilsklnslveeveealekyeflkvlraledfvseeLsnwYlriskdrlyaekkdedkraaqttlyeiletlvkllapilpflaeeiyqnlkeekkee 796
                +    ++++ vW+d    + ++l y+ ++ e++++ +pa l + G D  r  F +    +  +  + p   k+  hG+ ++ +G+KMSKslgNv+dp k++++yGaD +R++++s  ++ +d  fs++  ++ v+ kl + l   l + +  +++++ + + +    ++l+  Dr +l +       + e+++k +++++++al++  ++  +n Y+++      ++++ e  r +  +l e+l  ++ l+ p++p +a +i  +l   ++++
  MMETSP1137-20121227|983_1 335 DADAPKHIMYVWLDALTNYISALGYPDTDsESFRKFWPAHLHMVGKDILR--FHAIYWPAFLMAAQLPLpSKLFAHGWWMN-NGEKMSKSLGNVIDPVKLVETYGADQVRYFMISDvAFGSDGDFSDRRlIETVNAKLANELG-NLAYRT--TSFSHKHCDCSIPIPAELNADDRALLDSA------AAEHIDKLQLHRYTQALSALTQD--ANKYIDVQAPWALKKSDPERMRTVLWVLLETLRSIAILMQPVTPSIAANILDQLAVPAEQR 593
                5556689*******************999899******************..9***********99998357889**9985.8*********************************9********987515667777777766.556666..778877777888888999999**998764......6799999***********88888..999*****99999999999999*****************************9998766544 PP

>> TIGR00396  leuS_bact: leucine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.1   0.0   5.7e-18   3.3e-15      24     206 ..     109     286 ..      99     297 .. 0.90
   2 !   31.1   0.0   2.4e-11   1.4e-08     603     759 ..     415     587 ..     408     603 .. 0.66

  Alignments for each domain:
  == domain 1    score: 53.1 bits;  conditional E-value: 5.7e-18
  TIGR00396  24 edsekkkyYiLsmfPYPsgalHlGHvrnYtitDvlsRykrlkgynvlhPiGfDaFGlPaenaaiergtaPakwteeniakmkkqlqalgfsydwdrelattdpeYykftqwiFlelfekgLaykkeaevnwcpedktvLaneevidsdGrseRgdasvekkelkqwvlkitkyaekLledLee 206
                +d + +  +i + + Y  g+ H+GHv +  + D+++R+ rl gy+vl   G D  G   e+ a + g++P+ + +e  + +++ l    ++++ d+ ++tt++++    q ++ +l e g +y  e e ++  +d+     +e++  dG++  ++a+ve      +++++ ++ ekL  ++++
  MMETSP1137-20121227|983_1 109 SDASGRTRFITTPIYYVNGQPHIGHVYTSLACDIVARFSRLDGYDVLFLTGTDEHGQKVEQSASAAGKTPQAFADEVSETFRALLPL--YDFSCDQFIRTTEQRHKDAAQALWRKLVESGDIYLGEYEGWYSVRDEAFYTEDELV--DGKAP-TGAPVEWVAESSYFFRLSRWQEKLEAHIKA 286
                555566667778888999**********************************************************99999998875..67778899***********************************************8..99986.678999999999999999999999888765 PP

  == domain 2    score: 31.1 bits;  conditional E-value: 2.4e-11
  TIGR00396 603 lekmskskkngidPqeivkkyGaDalRlyilFasPieksleWdesgl.eGa.eRfldrvynlvkeilsekeaktelkeealeeaekelrrevhkalkkvtedlekkeslntviselmkllnallkakk..............e.elllealkalvtvlspiaPhlaeelaeklg 759
                 ekmsks +n+idP ++v+ yGaD +R +++      ++ ++++  l e +  +  + + nl++ ++s ++++   +  +  e + + r  +  a ++  ++l+ ++ +  ++s+l +  n+ +  +                  +lle+l+++  +++p++P++a ++ ++l 
  MMETSP1137-20121227|983_1 415 GEKMSKSLGNVIDPVKLVETYGADQVRYFMISDVAFGSDGDFSDRRLiETVnAKLANELGNLAYRTTSFSHKHCDCSIPIPAELNADDRALLDSAAAEHIDKLQLHR-YTQALSALTQDANKYIDVQApwalkksdpermrtVlWVLLETLRSIAILMQPVTPSIAANILDQLA 587
                58*****************************9999999999998876244414566778888888776555433333333333333444444444444444444444.556666666666665555545555555565554323578899999999999999999999888887 PP

>> TIGR00395  leuS_arch: leucine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.4   0.0   6.1e-10   3.6e-07      16      70 ..     106     159 ..     100     179 .. 0.83
   2 ?   -1.5   0.0      0.16        96     142     191 ..     205     254 ..     169     264 .. 0.81
   3 !   48.6   0.0   1.2e-16   7.2e-14     566     775 ..     365     585 ..     358     595 .. 0.70

  Alignments for each domain:
  == domain 1    score: 26.4 bits;  conditional E-value: 6.1e-10
  TIGR00395  16 ifeadpddrekffltvayPylnGvlhaGhlrtftivevvarfermkgknvLfplg 70 
                ++ +d   r +f +t +  y+nG  h+Gh++t    ++varf+r++g+ vLf  g
  MMETSP1137-20121227|983_1 106 QLPSDASGRTRF-ITTPIYYVNGQPHIGHVYTSLACDIVARFSRLDGYDVLFLTG 159
                555666666666.556667*********************************877 PP

  == domain 2    score: -1.5 bits;  conditional E-value: 0.16
  TIGR00395 142 kttdevydrfieWqlrkLkelGlikkGehpvrycpkdenpvedhdllsGe 191
                +tt++ ++   +   rkL e G i  Ge    y+ +de   ++ +l  G 
  MMETSP1137-20121227|983_1 205 RTTEQRHKDAAQALWRKLVESGDIYLGEYEGWYSVRDEAFYTEDELVDGK 254
                6778888888888899********************99888777777775 PP

  == domain 3    score: 48.6 bits;  conditional E-value: 1.2e-16
  TIGR00395 566 eefeyfyPldlrisakdLipnhLtfy.ifthvaifPeefWPrgivvnGyvllegkklskskGnlltlkeavekfGadvarlylldaaelvedadfkeseveaa.kkrl.erlkefaeeiakksdlevgeelsfldrwllsrlnkaike.vkealenlelrkavkaalfelkkdvd........yyrrrsg.envkd...vlaevleaiikLlaPfaPhlaeelyee 775
                e f+ f+P  l++ +kd++  h +++  f  +a +P    P  + ++G+ + +g+k+sks Gn++   + ve +Gad +r ++++     +d df ++ ++ + + +l ++l ++a + +  s+ +  +    +   l  + ++++   + e++++l+l++   +al  l++d +        + +++s+ e+++    vl e l +i+ L+ P++P +a ++ ++
  MMETSP1137-20121227|983_1 365 ESFRKFWPAHLHMVGKDILRFHAIYWpAFLMAAQLP---LPSKLFAHGWWMNNGEKMSKSLGNVIDPVKLVETYGADQVRYFMISDVAFGSDGDFSDRRLIETvNAKLaNELGNLAYRTTSFSHKH-CDCSIPIPAELNADDRALLDSaAAEHIDKLQLHRYT-QALSALTQDANkyidvqapWALKKSDpERMRTvlwVLLETLRSIAILMQPVTPSIAANILDQ 585
                679*******************99875677777777...6999****************************************************9998766514455256899999988876533.223333444444333333332133444444444444.333333333330000112255565552344446667778888899***********998765 PP

>> TIGR00435  cysS: cysteine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.6   0.0   1.9e-05     0.011      34      95 ..     128     189 ..     121     248 .. 0.79
   2 !   28.7   0.0   2.5e-10   1.4e-07     222     379 ..     375     537 ..     372     581 .. 0.69

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 1.9e-05
  TIGR00435  34 asHlGhaRtlvvfDvlrrilqylgYdvqyvqNiTDidDKiikrAreeelteeevserfieay 95 
                + H+Gh  t +++D+++r  ++ gYdv +     +   K+ + A   ++t ++ ++++ e +
  MMETSP1137-20121227|983_1 128 QPHIGHVYTSLACDIVARFSRLDGYDVLFLTGTDEHGQKVEQSASAAGKTPQAFADEVSETF 189
                57****************************99888899999999999998888776655554 PP

  == domain 2    score: 28.7 bits;  conditional E-value: 2.5e-10
  TIGR00435 222 iHsGGvDlifpHHeNEiaqsealfdkqlvkyflHngflkiegeKmSKSlgNfitikdllkkfdpralRlllls.vhyrnqldfseell.eeak....nalerlakal.ralkedlasakeiskkksplekefeaefvEaldddlntaealavlselvkksnlkei 379
                +H  G+D +  H     a  +a+      k f H g+ + +geKmSKSlgN+i    l++++ + ++R++++s v + +  dfs+  l e+++    n+l +la    +  +++++ +  i ++ + +++ + ++   +  d l++ +  ++ls l + +n k+i
  MMETSP1137-20121227|983_1 375 LHMVGKDILRFHAIYWPAFLMAAQLPLPSKLFAH-GWWMNNGEKMSKSLGNVIDPVKLVETYGADQVRYFMISdVAFGSDGDFSDRRLiETVNaklaNELGNLAYRTtSFSHKHCDCSIPIPAELNADDRALLDSAAAEHIDKLQLHRYTQALSALTQDAN-KYI 537
                5777777777777777777777777777788888.566779****************************9987479*******987651555543444455554333033334444444555555556666666666666677777777777777777777.443 PP

>> TIGR03447  mycothiol_MshC: cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.2   0.0    0.0028       1.6      50     112 ..     129     191 ..     113     246 .. 0.76
   2 !    7.2   0.0   0.00068       0.4     281     333 ..     410     462 ..     389     527 .. 0.75

  Alignments for each domain:
  == domain 1    score: 5.2 bits;  conditional E-value: 0.0028
  TIGR03447  50 thlGhaatylafdlvnrvlldaghkvhyvqnvtdvddPlleraerdGvdwrelgeseidlfre 112
                 h+Gh  t la d+v r  +  g +v +     +  + + + a++ G   ++++++  + fr 
  MMETSP1137-20121227|983_1 129 PHIGHVYTSLACDIVARFSRLDGYDVLFLTGTDEHGQKVEQSASAAGKTPQAFADEVSETFRA 191
                5*************************9998766666666667888888888888888888876 PP

  == domain 2    score: 7.2 bits;  conditional E-value: 0.00068
  TIGR03447 281 migldGekmskskGnlvlvsklraa.GeePaairl.avlaghyredrewtdevla 333
                    +Gekmsks+Gn++   kl +  G +   +r   + +  + +d +++d  l 
  MMETSP1137-20121227|983_1 410 WWMNNGEKMSKSLGNVIDPVKLVETyGAD--QVRYfMISDVAFGSDGDFSDRRLI 462
                44568**********98766665431444..455404445567777777777654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (611 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       116  (0.0282789); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                        20  (0.00487567); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.57u 0.29s 00:00:00.85 Elapsed: 00:00:00.73
# Mc/sec: 1104.73
//
Query:       MMETSP1137-20121227|984_1  [L=389]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (389 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        70  (0.0170648); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.19s 00:00:00.48 Elapsed: 00:00:00.37
# Mc/sec: 1387.67
//
Query:       MMETSP1137-20121227|985_1  [L=257]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (257 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       110  (0.0268162); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.16s 00:00:00.37 Elapsed: 00:00:00.30
# Mc/sec: 1130.71
//
Query:       MMETSP1137-20121227|986_1  [L=639]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (639 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       214  (0.0521697); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.19s 00:00:00.62 Elapsed: 00:00:00.56
# Mc/sec: 1506.09
//
Query:       MMETSP1137-20121227|987_1  [L=44]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (44 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        21  (0.00511945); expected 82.0 (0.02)
Passed bias filter:                       21  (0.00511945); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.11s 00:00:00.22 Elapsed: 00:00:00.32
# Mc/sec: 181.49
//
Query:       MMETSP1137-20121227|988_1  [L=217]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (217 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       114  (0.0277913); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.19s 00:00:00.39 Elapsed: 00:00:00.42
# Mc/sec: 681.94
//
Query:       MMETSP1137-20121227|989_1  [L=217]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (217 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       110  (0.0268162); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.12s 00:00:00.32 Elapsed: 00:00:00.31
# Mc/sec: 923.92
//
Query:       MMETSP1137-20121227|991_1  [L=511]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      4e-15   53.7   0.1    8.8e-15   52.6   0.1    1.6  1  TIGR01557 myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class


Domain annotation for each model (and alignments):
>> TIGR01557  myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.6   0.1   2.1e-18   8.8e-15       1      56 [.     121     179 ..     121     180 .. 0.89

  Alignments for each domain:
  == domain 1    score: 52.6 bits;  conditional E-value: 2.1e-18
  TIGR01557   1 kkrvvWteelhrrFlqAvqklGgedkatPkkIlelmkvek....lTreqvkSHlQkyrlk 56 
                k+r vWt+  h rF  Av++lG  + a P++I++lm+ ++     Tr+++kSHlQkyrl+
  MMETSP1137-20121227|991_1 121 KRRFVWTSAMHSRFEVAVKQLGV-AHAKPQAIRQLMNCDGeedaPTRQNIKSHLQKYRLF 179
                89*********************.999*********976522227*************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (511 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       172  (0.0419308); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.16s 00:00:00.50 Elapsed: 00:00:00.47
# Mc/sec: 1435.03
//
Query:       MMETSP1137-20121227|992_1  [L=287]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      8e-12   41.4   0.1    1.1e-11   40.9   0.0    1.2  1  TIGR02082 metH: methionine synthase


Domain annotation for each model (and alignments):
>> TIGR02082  metH: methionine synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.9   0.0   2.7e-15   1.1e-11       4     237 ..      12     215 ..       9     229 .. 0.79

  Alignments for each domain:
  == domain 1    score: 40.9 bits;  conditional E-value: 2.7e-15
  TIGR02082   4 rilvlDGamGtqlqsanLteadFrgeeadlarelkGnndlLnltkPeviaaihrayfeaGaDivetntFnsteialadYdledkayelnkkaaklarevadeftltpekkRfvaGslGP...tnklatlspdverpefrnvtydelvdaYkeqvkglldGGvDllLietvfDtlnakaalfaveevfeekgrelPilisgvivdksGrtLsG.qtleaflaslehaeililGLnCalG 237
                r l+lDG+mG +l+   L ++ F  +             + n  +Pe+++++h +y +aG D+v tntF  t+ ala +  e + ++l ++aa+ a  + +  +    +   +aG l P     k   ++           + +e+v  Y+  + + l   vDl+L et+    ++ aa  a+        +  P  +s ++ d+    L G +t+ a+la+l+ ++  ++  nC   
  MMETSP1137-20121227|992_1  12 RTLLLDGSMGHELKLRGLPADSFMSA------------MFANVDHPELVTSVHAEYVDAGVDVVTTNTFTLTPYALAPFAREGELATLLHAAARCASDAVASTS----RSVLIAGCLPPlgeCYKAECVG-----------DANEMVLTYSA-ICAELAPRVDLFLAETLTSSTEVIAARKAA----G--PSGKPFWASLTLKDECNAALRGgETVYAALAALKMKPPAAILFNCCAP 215
                67999999**9999999999999985............2346679*******************************************9999988877666555....7778999987721144555555...........44566666653.444556789****99988777766654443....3..345699999999999999987526789999999999999999999765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (287 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        51  (0.012433); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.23u 0.17s 00:00:00.40 Elapsed: 00:00:00.35
# Mc/sec: 1082.31
//
Query:       MMETSP1137-20121227|994_1  [L=1239]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1239 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       134  (0.032667); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.73u 0.17s 00:00:00.90 Elapsed: 00:00:01.31
# Mc/sec: 1248.35
//
Query:       MMETSP1137-20121227|995_1  [L=362]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.7e-29  101.1   0.0    5.6e-23   79.7   0.0    2.1  2  TIGR01250 pro_imino_pep_2: proline-specific peptidases
    5.9e-09   33.5   0.0    0.00032   18.0   0.0    2.2  2  TIGR02427 protocat_pcaD: 3-oxoadipate enol-lactonase
    7.3e-09   33.2   0.0    5.9e-05   20.4   0.0    2.1  2  TIGR03611 RutD: pyrimidine utilization protein D
      1e-08   32.6   0.0    1.5e-08   32.0   0.0    1.2  1  TIGR01249 pro_imino_pep_1: prolyl aminopeptidase
    2.2e-05   21.8   0.0      0.019   12.2   0.0    2.1  2  TIGR03695 menH_SHCHC: 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase


Domain annotation for each model (and alignments):
>> TIGR01250  pro_imino_pep_2: proline-specific peptidases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.7   0.0   6.8e-26   5.6e-23      23     116 ..     114     207 ..     105     254 .. 0.77
   2 !   19.4   0.0   1.7e-07   0.00014     233     287 ..     305     358 ..     284     359 .. 0.89

  Alignments for each domain:
  == domain 1    score: 79.7 bits;  conditional E-value: 6.8e-26
  TIGR01250  23 gekikllvlHGGPgssheyleslkellkegvevilYDQLGsgkSdqPddsd..eklltidrfvdEleevrekLaldkfyllgqSwGglLaqeYalk 116
                g  ++l+v HGGPg + +yl +l+++ ++   v++YDQLG+g+Sd P       + +    fv  l++v ++L+l +f+l gqSwGg+La eY+ +
  MMETSP1137-20121227|995_1 114 GTAAPLVVCHGGPGVPSDYLFDLSKVGNR--AVVFYDQLGAGRSDSPPLDAqtADEYCPAGFVRHLDAVLSALGLARFHLYGQSWGGILAFEYVRT 207
                56789****************99998766..9**************965334577899999********************************743 PP

  == domain 2    score: 19.4 bits;  conditional E-value: 1.7e-07
  TIGR01250 233 PtLltvgefdemtpeaaremqekiaksrlvvfedgshltmieepeeylkllkdfl 287
                 tLl+++e d +tp  +r   e++++ r v +  +sh++++eepe+y++ll ++l
  MMETSP1137-20121227|995_1 305 HTLLMTAEADFVTPACMRAW-ETLPGCRTVQIAGASHHALLEEPEQYFRLLVEHL 358
                49***************987.679***************************9987 PP

>> TIGR02427  protocat_pcaD: 3-oxoadipate enol-lactonase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   0.0     1e-05    0.0084      41      94 ..     143     202 ..     136     212 .. 0.80
   2 !   18.0   0.0   3.9e-07   0.00032     194     250 ..     304     358 ..     270     359 .. 0.84

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 1e-05
  TIGR02427  41 rvlryDkrGHGlSdvpegpysied......laddvlallDalgiekaavcGlSlGGliaq 94 
                +v+ yD+ G G+Sd p  ++  +d      +++ + a+l alg++++++ G S GG++a 
  MMETSP1137-20121227|995_1 143 AVVFYDQLGAGRSDSPPLDAQTADeycpagFVRHLDAVLSALGLARFHLYGQSWGGILAF 202
                6899*********99876654443222222789999*********************986 PP

  == domain 2    score: 18.0 bits;  conditional E-value: 3.9e-07
  TIGR02427 194 vPtlviaGdeDgstPpelvreiadlvpgarfaeieeaaHlpnleqpeafaallrdfl 250
                + tl+++ + D +tP+    +  +++pg r+++i++a+H + le+pe++ +ll+++l
  MMETSP1137-20121227|995_1 304 LHTLLMTAEADFVTPAC--MRAWETLPGCRTVQIAGASHHALLEEPEQYFRLLVEHL 358
                44899999*******75..4567899*****************************99 PP

>> TIGR03611  RutD: pyrimidine utilization protein D
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   0.0   7.2e-08   5.9e-05      12      97 ..     116     204 ..     108     217 .. 0.76
   2 !   10.8   0.0     6e-05      0.05     170     256 ..     272     359 ..     254     361 .. 0.82

  Alignments for each domain:
  == domain 1    score: 20.4 bits;  conditional E-value: 7.2e-08
  TIGR03611  12 daevvvlssGLGGsgsywapqlevleqefrvvvyDhrGtgrsp.....eelaedysiaalaadvlelldaldiekahvvGhalGgliglel 97 
                 a+ vv   G G  + y  + l+ + ++  vv yD+ G+grs      ++ a++y  a + +++ ++l+al+++++h+ G + Gg++++e 
  MMETSP1137-20121227|995_1 116 AAPLVVCHGGPGVPSDYLFD-LSKVGNR-AVVFYDQLGAGRSDsppldAQTADEYCPAGFVRHLDAVLSALGLARFHLYGQSWGGILAFEY 204
                56667776676666666654.4444433.79**********9622222467899999*****************************99875 PP

  == domain 2    score: 10.8 bits;  conditional E-value: 6e-05
  TIGR03611 170 ahfpgkenvLrrinaLeafdvd.arldri..klpvlliaakDDlLvPytqsseLaekLPdaelklleyGghasnvtdpetfnellldfLa 256
                 +++   +v r  +a+  +++d  +ldr    l++ll++a+ D++ P     + +e+LP ++ ++++  +h   + +pe++ +ll++ L+
  MMETSP1137-20121227|995_1 272 DAYAHAGTVWRGTAAISGWEADlSQLDRKrwPLHTLLMTAEADFVTPAC--MRAWETLPGCRTVQIAGASHHALLEEPEQYFRLLVEHLE 359
                55666677778888888888887788876336779**********9975..688********************************9996 PP

>> TIGR01249  pro_imino_pep_1: prolyl aminopeptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.0   0.0   1.8e-11   1.5e-08      25     115 ..     114     207 ..      96     216 .. 0.83

  Alignments for each domain:
  == domain 1    score: 32.0 bits;  conditional E-value: 1.8e-11
  TIGR01249  25 PdGkPvvflhGGPGsGtdeecrkffdpevyrivlldqrGaGkskp....haileenttwdlvadieklreklkikkWlvfGGsWGstlalayaqk 115
                    P+v+ hGGPG  +d             +v+ dq GaG+s +     ++++e     +v  ++ +  +l++ ++ ++G sWG  la+ y ++
  MMETSP1137-20121227|995_1 114 GTAAPLVVCHGGPGVPSD-YLFDLSKVGNRAVVFYDQLGAGRSDSppldAQTADEYCPAGFVRHLDAVLSALGLARFHLYGQSWGGILAFEYVRT 207
                5678**********9765.556667777789999********9752222345667777899*****************************99876 PP

>> TIGR03695  menH_SHCHC: 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.2   0.0   2.3e-05     0.019       4      90 ..     118     206 ..     115     219 .. 0.80
   2 !    7.8   0.0   0.00053      0.44     198     251 ..     306     358 ..     283     359 .. 0.73

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 2.3e-05
  TIGR03695   4 vlvlLHGflgskedwqalieeleekfsvlalDLpgHGkskslkekeakdfeea....aqellkelleklkiekviLvGYSlGGRialalal 90 
                 lv+ HG  g  +d+    +++  +  v+  D +g G+s+s+  +++++ e +    +++ l+ +l++l+  +++L+G S GG +a +++ 
  MMETSP1137-20121227|995_1 118 PLVVCHGGPGVPSDYLFDLSKV-GNRAVVFYDQLGAGRSDSPPLDAQTADEYCpagfVRH-LDAVLSALGLARFHLYGQSWGGILAFEYVR 206
                6899999999999*99999999.89999***********998665544444431111445.78888999*****************99875 PP

  == domain 2    score: 7.8 bits;  conditional E-value: 0.00053
  TIGR03695 198 vlylvGekDekFkkiakemqkllpalklevieeaGHnihlenpeafakileefl 251
                +l+++ e D    +  + ++ +lp ++ ++i+ a+H + le+pe++ + l e l
  MMETSP1137-20121227|995_1 306 TLLMTAEADFVTPACMRAWE-TLPGCRTVQIAGASHHALLEEPEQYFRLLVEHL 358
                44455555544344444444.8999*********************99887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (362 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        59  (0.0143832); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.28u 0.16s 00:00:00.44 Elapsed: 00:00:00.69
# Mc/sec: 692.46
//
Query:       MMETSP1137-20121227|996_1  [L=607]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (607 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        90  (0.0219405); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.15s 00:00:00.53 Elapsed: 00:00:00.57
# Mc/sec: 1381.33
//
Query:       MMETSP1137-20121227|997_1  [L=576]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.3e-12   42.9  22.2    2.2e-11   41.5  10.6    2.1  2  TIGR01065 hlyIII: channel protein, hemolysin III family


Domain annotation for each model (and alignments):
>> TIGR01065  hlyIII: channel protein, hemolysin III family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.5   0.4   0.00055       2.3       2      59 ..     100     132 ..      76     153 .. 0.65
   2 !   41.5  10.6   5.2e-15   2.2e-11      12     202 ..     345     557 ..     333     559 .. 0.76

  Alignments for each domain:
  == domain 1    score: 5.5 bits;  conditional E-value: 0.00055
  TIGR01065   2 eianaitHligivlaivalvlllalsseakalavlsvlvyglslvlLflvStlyHsva 59 
                e+ n++tH+ig+vl +v+   ++ +++ +                         H+++
  MMETSP1137-20121227|997_1 100 ETWNVWTHVIGAVLFAVLFLQVFYMAAPV-------------------------HMSH 132
                45566666666666555555555555444.........................4333 PP

  == domain 2    score: 41.5 bits;  conditional E-value: 5.2e-15
  TIGR01065  12 givlaivalvlllalsseak..alavlsvlvyglslvlLflvStlyHsvakaek..akkvlkklDhaaIyvlIAgsYtpvlllelksa.....lgltvlviiWllallgiilklvfkkrpkllslvlYlvmGwlvvlvvktl..lenlsgaalvlL.alG..GvlYtvGavfyalkekip.......lkla.HaiwHlfvlgasavhfvaill 202
                 +  ++ al+ +l+ +++     l+++ +  + +s vl  ++S+ yH +a+a +  + + l + D + I  lI gs +p+    + +      l ltv+++  +   + + l +++ ++ +l  ++l+ ++G++ ++ +++l   + +++++l++L  +G  G++Y  G+++ya+  ++        l +a H+ wH++v++a+ +hf a+l+
  MMETSP1137-20121227|997_1 345 EVSSSVEALAPMLRDAASLDsiSLERWPLYCFIASAVLCLVASAAYHLFATAMTgpVSYYLGMWDYTGIIALIVGSCVPIYYYGFYTSavfrrLYLTVISLLGGALFVCTQLSFFYSAKWRLTRILLFALLGLVGAVPLVHLafHHDFEAQTLAMLgQIGqmGLVYLAGTLIYATGFPEAfiprrfdLFFAsHQWWHVMVVVAALLHFRAVLN 557
                455678889999988888877899*************************95444449*******************9999888755441110034445555555555677788999999**************976655554114566666666663355779***********987766666775533457******************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (576 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       168  (0.0409556); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.15s 00:00:00.55 Elapsed: 00:00:00.69
# Mc/sec: 1101.82
//
Query:       MMETSP1137-20121227|998_1  [L=538]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (538 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        88  (0.0214529); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.12s 00:00:00.47 Elapsed: 00:00:00.48
# Mc/sec: 1479.38
//
Query:       MMETSP1137-20121227|999_1  [L=103]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (103 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       170  (0.0414432); expected 82.0 (0.02)
Passed bias filter:                      142  (0.0346173); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.16s 00:00:00.32 Elapsed: 00:00:00.34
# Mc/sec: 399.85
//
Query:       MMETSP1137-20121227|1000_1  [L=112]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (112 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        46  (0.011214); expected 82.0 (0.02)
Passed bias filter:                       38  (0.00926377); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.12s 00:00:00.26 Elapsed: 00:00:00.26
# Mc/sec: 568.57
//
Query:       MMETSP1137-20121227|1002_1  [L=181]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (181 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        57  (0.0138957); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.17s 00:00:00.36 Elapsed: 00:00:00.48
# Mc/sec: 497.71
//
Query:       MMETSP1137-20121227|1003_1  [L=105]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (105 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        39  (0.00950756); expected 82.0 (0.02)
Passed bias filter:                       35  (0.00853242); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.12s 00:00:00.27 Elapsed: 00:00:00.28
# Mc/sec: 477.89
//
Query:       MMETSP1137-20121227|1004_1  [L=275]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.013   13.8   3.1      0.028   12.7   2.2    1.6  1  TIGR04102 SWIM_PBPRA1643: SWIM/SEC-C metal-binding motif protein, PBPRA1643 family


Domain annotation for each model (and alignments):
>> TIGR04102  SWIM_PBPRA1643: SWIM/SEC-C metal-binding motif protein, PBPRA1643 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   2.2   6.9e-06     0.028      91     107 ..      86     102 ..      73     103 .. 0.85

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 6.9e-06
   TIGR04102  91 rndpCsCGsgkkykkCC 107
                   +pC CGsg  y  CC
  MMETSP1137-20121227|1004_1  86 EAEPCVCGSGDSYSNCC 102
                 468************** PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (275 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        62  (0.0151146); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.23u 0.16s 00:00:00.39 Elapsed: 00:00:00.33
# Mc/sec: 1099.91
//
Query:       MMETSP1137-20121227|1005_1  [L=139]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (139 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        71  (0.0173086); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.16s 00:00:00.33 Elapsed: 00:00:00.34
# Mc/sec: 539.60
//
Query:       MMETSP1137-20121227|1006_1  [L=348]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (348 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        75  (0.0182838); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.17s 00:00:00.45 Elapsed: 00:00:00.45
# Mc/sec: 1020.72
//
Query:       MMETSP1137-20121227|1008_1  [L=107]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (107 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        40  (0.00975134); expected 82.0 (0.02)
Passed bias filter:                       31  (0.00755729); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.27
# Mc/sec: 523.07
//
Query:       MMETSP1137-20121227|1009_1  [L=318]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (318 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        65  (0.0158459); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.16s 00:00:00.42 Elapsed: 00:00:00.61
# Mc/sec: 688.07
//
Query:       MMETSP1137-20121227|1010_1  [L=538]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (538 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       109  (0.0265724); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.15s 00:00:00.53 Elapsed: 00:00:00.37
# Mc/sec: 1919.19
//
Query:       MMETSP1137-20121227|1011_1  [L=115]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (115 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        38  (0.00926377); expected 82.0 (0.02)
Passed bias filter:                       38  (0.00926377); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.14s 00:00:00.28 Elapsed: 00:00:00.26
# Mc/sec: 583.80
//
Query:       MMETSP1137-20121227|1012_1  [L=292]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (292 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        55  (0.0134081); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.12s 00:00:00.35 Elapsed: 00:00:00.65
# Mc/sec: 592.94
//
Query:       MMETSP1137-20121227|1014_1  [L=146]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (146 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        75  (0.0182838); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.15s 00:00:00.32 Elapsed: 00:00:00.93
# Mc/sec: 207.21
//
Query:       MMETSP1137-20121227|1017_1  [L=284]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (284 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        52  (0.0126767); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.15s 00:00:00.39 Elapsed: 00:00:00.74
# Mc/sec: 506.55
//
Query:       MMETSP1137-20121227|1018_1  [L=317]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (317 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       117  (0.0285227); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.17s 00:00:00.43 Elapsed: 00:00:00.42
# Mc/sec: 996.20
//
Query:       MMETSP1137-20121227|1019_1  [L=327]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.7e-08   29.8   0.2    1.5e-07   28.9   0.1    1.4  1  TIGR00569 ccl1: cyclin ccl1


Domain annotation for each model (and alignments):
>> TIGR00569  ccl1: cyclin ccl1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.9   0.1   3.6e-11   1.5e-07     103     263 ..     152     316 ..     136     322 .. 0.75

  Alignments for each domain:
  == domain 1    score: 28.9 bits;  conditional E-value: 3.6e-11
   TIGR00569 103 ivltcvFlAcKveefnv.sieqFvknlketrekaleevLeyEllliqsLkfsLlvhnPyrPleGFllDiktvlpkleneevlrkiadkflne.vlltDvvllytPsqiaLaailseasrlvl........klesrltealsvkenreelpqlidivrelkklkkkeeeers 263
                 + +t++FlA+K ee +     +Fv    +    + +++L  E +++  L+f+L+  n y  l+ F      v  ++ ++        +f  e +l    +l y Ps+ia +ai+ + ++++         k   ++  al+      +l +  +++++lk+++kk+ +e++
  MMETSP1137-20121227|1019_1 152 VGVTAMFLASKYEEIYApECRDFVYISDKA--YTRDQILTMEGNMLATLNFQLTAPNAYVFLKRFA----KVAGIVSVPRSKTDFLASFFVElTLQEYKMLKYXPSMIAASAIYLALKTMGQpswtadlaKHACYTEAALKPCVRDMCLLHRNASTNSLKAVVKKYAQEKH 316
                 568***********8873578999766555..788************************9888775....45555555555555555555550555556777**************9999998888866444444444444344456777888999999999999999865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (327 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       131  (0.0319356); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.25u 0.15s 00:00:00.40 Elapsed: 00:00:00.41
# Mc/sec: 1052.69
//
Query:       MMETSP1137-20121227|1020_1  [L=164]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (164 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        88  (0.0214529); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.14s 00:00:00.31 Elapsed: 00:00:00.30
# Mc/sec: 721.54
//
Query:       MMETSP1137-20121227|1021_1  [L=296]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        1.2    6.0  14.7        1.9    5.3  10.2    1.2  1  TIGR02992 ectoine_eutC: ectoine utilization protein EutC


Domain annotation for each model (and alignments):
>> TIGR02992  ectoine_eutC: ectoine utilization protein EutC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3  10.2   0.00045       1.9      99     207 ..     183     288 ..     181     294 .. 0.78

  Alignments for each domain:
  == domain 1    score: 5.3 bits;  conditional E-value: 0.00045
   TIGR02992  99 eallldnGyltdvrtaaaGavaarrlaredasevailGaGvqarlqlealtlvrdiksariwardaakaealalslaselGl.dvtaatdvrealsgadiivtttpaetp 207
                 +all  nG  +   t+aa   +a+++a ++as  a   a  qa+lq +al+  +  ++a     ++a+a+a a ++++  G  +++a+t+ ++  +++  + +t+pa +p
  MMETSP1137-20121227|1021_1 183 DALLPSNGATSTASTSAALPQTAQQIASAQASAEASAEASAQANLQGNALATEQGTERAT----EQANAQANAPAIERATGQaNAQANTSATAPATASATMPATAPATAP 288
                 79999*********************************************9988888765....6667777777777777751455666655555555555566677666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (296 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       223  (0.0543637); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.30u 0.18s 00:00:00.48 Elapsed: 00:00:00.68
# Mc/sec: 574.54
//
Query:       MMETSP1137-20121227|1022_1  [L=404]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (404 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        88  (0.0214529); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.17s 00:00:00.48 Elapsed: 00:00:00.40
# Mc/sec: 1333.09
//
Query:       MMETSP1137-20121227|1023_1  [L=477]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      1e-05   23.9   0.0    1.9e-05   23.0   0.0    1.5  1  TIGR01444 fkbM_fam: methyltransferase, FkbM family


Domain annotation for each model (and alignments):
>> TIGR01444  fkbM_fam: methyltransferase, FkbM family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.0   0.0   4.6e-09   1.9e-05      47     143 .]     184     288 ..     151     288 .. 0.78

  Alignments for each domain:
  == domain 1    score: 23.0 bits;  conditional E-value: 4.6e-09
   TIGR01444  47 lknvkllnaAvgdregeleftvsddatgnsslaads........elaeeseieVevvtlddlveeag.lekvdllKiDvEGaEleVLrgl.aetleekvpaivlevh 143
                 +   ++++a vg ++g+++++ s+++    +l++ +         +++e++  V+++ l  +++    le+  +lK+DvEGaE e+   l a+  +  +++++ e+h
  MMETSP1137-20121227|1023_1 184 R--YTMVPAGVGGSNGTITLFGSRQQLLLGGLQPGGfrfrahadPAEREEKHVVPSIDLVWWLRTSFrLEDYVVLKLDVEGAEQEIVPALaASGADALIDVLLWECH 288
                 3..78888999999999999999888888888777787777765334444778********9987545*******************99988888888888888887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (477 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        70  (0.0170648); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.16s 00:00:00.50 Elapsed: 00:00:00.34
# Mc/sec: 1851.73
//
Query:       MMETSP1137-20121227|1024_1  [L=165]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.9e-05   20.3   0.0    5.4e-05   20.2   0.0    1.0  1  TIGR03669 urea_ABC_arch: urea ABC transporter, substrate-binding protein


Domain annotation for each model (and alignments):
>> TIGR03669  urea_ABC_arch: urea ABC transporter, substrate-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   0.0   1.3e-08   5.4e-05     156     268 ..      46     160 ..       6     164 .. 0.83

  Alignments for each domain:
  == domain 1    score: 20.2 bits;  conditional E-value: 1.3e-08
   TIGR03669 156 iakendaevvGeefiPlsvssfsstiqriqkadPdfvlsllvGanhesfyeqkasadlelPigtsvavaqgyehk...rfeapalkdvyagvnyleeidteeaeafverfyekfPd 268
                   +  ++++v   +   +  sf+  +qr+ +a+ +  l++ +G +++sf  qkas+   l  gts   a g   +    ++++  +d + g  y+ +++t+e++a  +rf++ +P 
  MMETSP1137-20121227|1024_1  46 ACSRTGTNIVSFAYSTTDTFSFEAQMQRVANANLNVFLAVTLGISEASFILQKASEFGILGAGTSWMFADGIFGEsliAIDPELHADAH-GSLYISQMPTSEDDAGWSRFTADWPS 160
                 4556789999999999*****************************************************99654401145666666666.567*********************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (165 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       112  (0.0273038); expected 82.0 (0.02)
Passed bias filter:                      100  (0.0243784); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.20u 0.17s 00:00:00.37 Elapsed: 00:00:00.36
# Mc/sec: 604.95
//
Query:       MMETSP1137-20121227|1025_1  [L=142]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.021   10.3   6.0      0.024   10.2   4.2    1.0  1  TIGR02168 SMC_prok_B: chromosome segregation protein SMC
      0.027    9.9   5.3       0.03    9.8   3.7    1.0  1  TIGR02169 SMC_prok_A: chromosome segregation protein SMC
      0.032   10.2   1.0      0.035   10.1   0.7    1.0  1  TIGR03683 A-tRNA_syn_arch: alanine--tRNA ligase
       0.32    7.8   6.5       0.41    7.4   4.5    1.1  1  TIGR02966 phoR_proteo: phosphate regulon sensor kinase PhoR


Domain annotation for each model (and alignments):
>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   4.2   2.3e-05     0.024     791     911 ..      10     130 ..       2     137 .. 0.57

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 2.3e-05
   TIGR02168 791 aeieqlkeelkalrealseleaeltelkeeaaekeerleslekeiaalekeleeleeqieeleeeiesleaeieeleeeleeleeeleellkekasleealaelreeleelseelrelekk 911
                 + +eql  e ++  +a +++ ++++el++++ +++e ++ l ++ a +   +e+l++++e++++ i +l++ ++ ++  + el+++++e+++  ++ +  l++l   l ++++ +++ +++
  MMETSP1137-20121227|1025_1  10 KHVEQLMIEREDFIAASKAQTSRVQELEQQLLSVSEMRDTLAEQNATQLLLIEQLSASSESKSQLIDKLQSTMRCMWGVQLELQRKAAEISELSQEGSGLLESLDGMLGSKDAGQNASREE 130
                 4555556666666666666666666666666666666666666666666666666666666666666666666666666556666666666666555555555555555555555555544 PP

>> TIGR02169  SMC_prok_A: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   3.7   2.9e-05      0.03     795     888 ..      13     109 ..       2     135 .. 0.35

  Alignments for each domain:
  == domain 1    score: 9.8 bits;  conditional E-value: 2.9e-05
   TIGR02169 795 eeieeelekleeevsriearleeieaelnklelekelleeeiqelqeeieeleeqkkeiekeieelkakleel...eeeleeleaavreLeeelkdL 888
                 e++  e e+  +  + + +r++e+e++l + +  ++ l e+ +++   ie+l +  ++  + i++l+  ++ +   + el++++a++ eL++e ++L
  MMETSP1137-20121227|1025_1  13 EQLMIEREDFIAASKAQTSRVQELEQQLLSVSEMRDTLAEQNATQLLLIEQLSASSESKSQLIDKLQSTMRCMwgvQLELQRKAAEISELSQEGSGL 109
                 2222222222222333333333333333333333333333333333333333333333333333333333221111233333333333333333333 PP

>> TIGR03683  A-tRNA_syn_arch: alanine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.7   3.4e-05     0.035     759     843 ..      11      94 ..       3     133 .. 0.73

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 3.4e-05
   TIGR03683 759 epeqlpetvkrffeewkeqrkeieklkeklaelkieeleseaekvgdvkv.vvekvdadeeelkeiaeklaekekvvvlvsekegk 843
                 + eql  + + f++  k+q  ++++l+++l ++ + +  +  ++ + +++ ++e+++a++e+ +++++kl+++ + +  v+ + ++
  MMETSP1137-20121227|1025_1  11 HVEQLMIEREDFIAASKAQTSRVQELEQQLLSVSEMR--DTLAEQNATQLlLIEQLSASSESKSQLIDKLQSTMRCMWGVQLELQR 94 
                 67889999999*******************9998866..77777777777799*****************9887776555444333 PP

>> TIGR02966  phoR_proteo: phosphate regulon sensor kinase PhoR
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   4.5    0.0004      0.41     149     230 ..      18      99 ..       8     105 .. 0.84

  Alignments for each domain:
  == domain 1    score: 7.4 bits;  conditional E-value: 0.0004
   TIGR02966 149 aaekalelmeeqskrmqsLvedLltLsrlEsaakekeeekvdvaelleelkkeaealseekehqielevdaavkvkgdeeeL 230
                 ++e ++++ ++q++r+q+L ++Ll+ s +  +  e++++++ + e l++  ++ ++l ++ + +++     +++++ +  e+
  MMETSP1137-20121227|1025_1  18 EREDFIAASKAQTSRVQELEQQLLSVSEMRDTLAEQNATQLLLIEQLSASSESKSQLIDKLQSTMRCMWGVQLELQRKAAEI 99 
                 5677899999*********************999999999999999999999999999998888888877777777766665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (142 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       199  (0.0485129); expected 82.0 (0.02)
Passed bias filter:                      129  (0.0314481); expected 82.0 (0.02)
Passed Vit filter:                        26  (0.00633837); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.22u 0.15s 00:00:00.37 Elapsed: 00:00:00.41
# Mc/sec: 457.13
//
Query:       MMETSP1137-20121227|1026_1  [L=289]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (289 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        77  (0.0187713); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.14s 00:00:00.37 Elapsed: 00:00:00.38
# Mc/sec: 1003.81
//
Query:       MMETSP1137-20121227|1027_1  [L=256]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (256 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        54  (0.0131643); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.13s 00:00:00.35 Elapsed: 00:00:00.31
# Mc/sec: 1089.97
//
Query:       MMETSP1137-20121227|1028_1  [L=570]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.8e-10   37.1   6.2    1.3e-09   35.3   4.3    1.7  1  TIGR00893 2A0114: D-galactonate transporter
    6.7e-06   22.7   1.5    1.5e-05   21.6   0.0    1.9  2  TIGR00894 2A0114euk: Na(+)-dependent inorganic phosphate cotransporter
  ------ inclusion threshold ------
       0.39    8.7   2.9        1.9    6.5   0.3    2.9  2  TIGR02184 Myco_arth_vir_N: Mycoplasma virulence family signal region


Domain annotation for each model (and alignments):
>> TIGR00893  2A0114: D-galactonate transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.3   4.3   9.7e-13   1.3e-09      24     356 ..     131     477 ..     119     495 .. 0.78

  Alignments for each domain:
  == domain 1    score: 35.3 bits;  conditional E-value: 9.7e-13
   TIGR00893  24 LglsaaqyglvfsafsigyvlfqlpggllldriGakktlavaivlWglftllqafat..............alvslivlRvllGlaEaplfPgiikivasWFPakeratavsifnsaqalgaiiggplvgwilvefs..WqlvFiieGvlaiilgvlilkvikdkpekakvlkeeeksivvggllaeqagkknseakkaqikel..Lkdrrviglalgqflvnilly.ffltwfplylkqerglslleagllaslpaivgfvgmvlggilsdlllkkgkslvlarktaiiaglvlsllliatn.lvaskiaalalvalaffgkglaailwavisdvlskeiagltgGlinllG 356
                 +++++ +++  + +f  + v+  ++ + + dr+G+k  ++ a++l +  +l+ + +               ++ + i+  +l+Gla   +    ++++a WF ++era a++  + ++++g +  + +vg++++++    ++ F ++ + a++ +v+ + + +++pe++   + + + ++++ +    +++ +  +k  +  ++  L   r +g+a   f+++i+++ + +t++   l  ++      + l ++  +i+ ++g++l+g   d + +  k++vla+ ++++ +lv   ++ + +  + ++++++ l+al+  +  ++ i + +  +v+ +    ++ ++ +l+G
  MMETSP1137-20121227|1028_1 131 MNFQGHEASELIDIFLCANVFSCFLYTDIADRFGLKRCVTAAAFLMASGCLIRSGIPlpfnsadelvrsmpSYNQEIAGTILVGLAQPFFQCSPPLLSATWFGSSERALATATAINFNQVGIA-TAFIVGGLMANSPagIHSYFDVITIFAALGAVATFLFFRERPETPPSASTAAE-WAHKDA---SDEFVDAGFKLTYPGKAvdLLGARGFGYATCAFVASIGCTnVVSTFTAPELARAGFAPGFGIDLAGAGFQIAIVLGGILIGGYVDRTKNF-KKVVLACLVVATSLLVGLGVSEGYQqTFSAPVVIALLLALGASAGPVQPIAAELAVEVSYPCDENAVEATQQLSG 477
                 5678888999999999*****************************99999988866579999******999888889999*******9999999*************************9965.455777766665578****************************8876665555.555552...34666667776665554233455666777777777776552789*********9999999999999999999999999999999987665.79***********88877666666635556666666777776665556666666666665555555556666666 PP

>> TIGR00894  2A0114euk: Na(+)-dependent inorganic phosphate cotransporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.6   0.0   1.1e-08   1.5e-05     138     231 ..     210     303 ..     158     329 .. 0.90
   2 ?   -0.6   0.4     0.057        78      96     190 ..     393     491 ..     378     499 .. 0.61

  Alignments for each domain:
  == domain 1    score: 21.6 bits;  conditional E-value: 1.1e-08
   TIGR00894 138 RvlqGlaeglvspaqhellakWiPPkERsrlvsavlsGaqlGtlivlpisGlicesdlgWpavfYifgivgtvvlilwlvlvyddPseHpkise 231
                  +l Gla+     +   l a W+   ER+ +++  +   q+G + ++ ++Gl+++s  g  + f +++i +++  ++ ++++ + P++ p  s+
  MMETSP1137-20121227|1028_1 210 TILVGLAQPFFQCSPPLLSATWFGSSERALATATAINFNQVGIATAFIVGGLMANSPAGIHSYFDVITIFAALGAVATFLFFRERPETPPSAST 303
                 67889999999999999*********************************************************************99887665 PP

  == domain 2    score: -0.6 bits;  conditional E-value: 0.057
   TIGR00894  96 vGylakkygtkkvigaalllssvlslliPiaaa......vgvalvivlRvlqGlaeglvspaqhellakWi.PPkERsrlvsavlsGaqlGtlivlpisGli 190
                 +Gy+    + kkv+ a l++   +sll+            ++ +vi+l +  G+  g+v p   el +    P  E +   +  lsG ++ +l+ +pi  + 
  MMETSP1137-20121227|1028_1 393 GGYVDRTKNFKKVVLACLVVA--TSLLVGLGVSegyqqtFSAPVVIALLLALGASAGPVQPIAAELAVEVSyPCDENAVEATQQLSGNLFSALL-VPICQWA 491
                 456666666666665544443..34444333220000113444578888889999999999999999987515566666677788988876554.4666555 PP

>> TIGR02184  Myco_arth_vir_N: Mycoplasma virulence family signal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.1     0.098   1.3e+02      11      24 ..     252     265 ..     250     272 .. 0.81
   2 ?    6.5   0.3    0.0014       1.9       7      23 ..     403     419 ..     403     423 .. 0.89

  Alignments for each domain:
  == domain 1    score: 0.6 bits;  conditional E-value: 0.098
   TIGR02184  11 IatlaivtaLlvsq 24 
                 Iat+ iv+ L + +
  MMETSP1137-20121227|1028_1 252 IATAFIVGGLMANS 265
                 9*******998766 PP

  == domain 2    score: 6.5 bits;  conditional E-value: 0.0014
   TIGR02184   7 KKiiIatlaivtaLlvs 23 
                 KK   a l+++t+Llv 
  MMETSP1137-20121227|1028_1 403 KKVVLACLVVATSLLVG 419
                 99*************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (570 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       147  (0.0358362); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.44u 0.14s 00:00:00.58 Elapsed: 00:00:00.44
# Mc/sec: 1709.86
//
Query:       MMETSP1137-20121227|1029_1  [L=169]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (169 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        52  (0.0126767); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.16s 00:00:00.34 Elapsed: 00:00:00.34
# Mc/sec: 656.06
//
Query:       MMETSP1137-20121227|1030_1  [L=492]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      3e-63  211.6   0.7    3.8e-63  211.3   0.5    1.0  1  TIGR03207 cyc_hxne_CoA_dh: cyclohexanecarboxyl-CoA dehydrogenase
    4.4e-28   96.3   0.5    5.4e-28   96.0   0.4    1.1  1  TIGR03203 pimD_small: pimeloyl-CoA dehydrogenase, small subunit
    2.2e-26   90.5   0.0    3.4e-26   89.8   0.0    1.2  1  TIGR04022 sulfur_SfnB: sulfur acquisition oxidoreductase, SfnB family
    2.9e-22   76.9   0.0    1.3e-21   74.8   0.0    1.9  1  TIGR03204 pimC_large: pimeloyl-CoA dehydrogenase, large subunit


Domain annotation for each model (and alignments):
>> TIGR03207  cyc_hxne_CoA_dh: cyclohexanecarboxyl-CoA dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  211.3   0.5   3.7e-66   3.8e-63       2     368 ..     116     483 ..     115     486 .. 0.95

  Alignments for each domain:
  == domain 1    score: 211.3 bits;  conditional E-value: 3.7e-66
   TIGR03207   2 nedlqalaekarrfaaerlapgfkerdktrvldrellrdmgelgflgpelseeygglgvgclaagvlleeiaradlsvs.yvnllaslngqilaqharpeiakewlakliageallaialteprggsdaarlrlrierdgddyvlngektsisaadqadaavvfartgsveegargisallvpmdlpgitrn.rfdcigqraigrgsiffedvrvsadhllgdegkgfvqvmqgfdfsraliglqvlavaraaldetweyvaereafgkklsafqgvsfpladletqveaarllclrtlwlkdhglphtseaamckwwapklaydvihqcllshghggydrg.dleqrlrdvlglqigdgtaqimktiia 368
                  e+   + + a rfaae++ap  +  d   v+d +++  + e gf+g e+ e+ygg g    +a ++ ee+ar d +vs  v++  ++  + ++  a   +   wl +l   + l + +l+e  +gsda  lr r+er  d yvlngek  is + +a + +v+a +    +g rgi++++vp d pg+t   + d  g ra    ++ +e+v v+ + +lg+ gkg+   ++ ++  r  ig q++++a+ ald t  y+ er+ fg  +++fqgv + +a++ t ++aarll   +  lk+ g p   eaam k ++ ++a  v  + +  +g  g+ ++  +e+ +rd     i +gt++i    ia
  MMETSP1137-20121227|1030_1 116 REEEAMMRDAAARFAAEQVAPHVRRMDDECVMDPSIISGLFENGFMGVEIGEQYGGCGGSFTSALLVVEELARVDPAVSvMVDIHNTIVNNCFSAWASEPLKSTWLPRLA-SDCLGSFCLSEAGSGSDAFALRTRAERRQDGYVLNGEKMWISNSAEAGVFLVMANAA-PGDGYRGITCFVVPRDTPGLTVGkKEDKLGIRASSTCTVRLENVEVPESAVLGEVGKGYRYAIEILNEGRIGIGAQMVGLAQGALDLTLPYLHERRQFGSAVADFQGVQHQVAQMATDLHAARLLVYDAARLKESGKPFVKEAAMAKLFSSQVAERVASRXVELMGGVGFTKDyGVEKLYRDAKIGAIYEGTSNIQLNTIA 483
                 5777788999************************************************988889999***********94589999**********************85.68999************************************************9875.5789****************975167889************************************************************************************************************************************99999999*99989*******99999*******9877666 PP

>> TIGR03203  pimD_small: pimeloyl-CoA dehydrogenase, small subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.0   0.4   5.3e-31   5.4e-28      41     353 ..     150     463 ..     115     483 .. 0.86

  Alignments for each domain:
  == domain 1    score: 96.0 bits;  conditional E-value: 5.3e-31
   TIGR03203  41 avwgklaeqgllglpfseadggfgagavetmivmealgk...alvlepylatvvigggflrragsaaqkaaylpgiidgsktlafaqleknsrydlgdvsttakkkgdgwvidgekfvvlngeaadtlivtartkgarrdrtgigvflvpadakgvtkkgyptqdglhaad...itltgvevgadaaigdpenaleliervvddarvalcaeavglmdeslkttveyiktrkqfgvaigsfqvlqhraadmfvaveqarsmalfatmaadfddakeranaiaaakvqigkslkfvgqqsiqlhggigmtmeakighyfk 353
                 ++ + l e+g++g+ + e+ gg g+    +++v+e l +   a+ +   +   ++   f     s+  k+++lp +       +f+  e  s  d + + t a ++ dg+v++gek+ + n  +a  ++v a +  +     gi  f+vp d+ g+t      + g++a+    + l  vev   a +g+  ++      ++++ r+ + a+ vgl + +l  t+ y++ r+qfg a+  fq +qh+ a+m      ar +   a+  +  +  k   +  a ak+   +    v  + ++l gg+g+t ++ + + ++
  MMETSP1137-20121227|1030_1 150 SIISGLFENGFMGVEIGEQYGGCGGSFTSALLVVEELARvdpAVSVMVDIHNTIVNNCFSA-WASEPLKSTWLPRLASDC-LGSFCLSEAGSGSDAFALRTRAERRQDGYVLNGEKMWISNSAEAGVFLVMANAAPGDG-YRGITCFVVPRDTPGLTVGKKEDKLGIRASStctVRLENVEVPESAVLGEVGKGYRYAIEILNEGRIGIGAQMVGLAQGALDLTLPYLHERRQFGSAVADFQGVQHQVAQMATDLHAARLLVYDAARLK--ESGKPFVKEAAMAKLFSSQVAERVASRXVELMGGVGFTKDYGVEKLYR 463
                 6778899*****************************9873334444455555555666654.458899*******97543.3368888999***************************************999876654.56****************9999999**997522277999*************************************************************************99999998776665444..5677788888999**************************998887665 PP

>> TIGR04022  sulfur_SfnB: sulfur acquisition oxidoreductase, SfnB family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.8   0.0   3.3e-29   3.4e-26      12     363 ..     124     469 ..     113     474 .. 0.83

  Alignments for each domain:
  == domain 1    score: 89.8 bits;  conditional E-value: 3.3e-29
   TIGR04022  12 eiarel.aaefaeeaaeRDrerrlPveeldafsqsGLwgitvPrayGGaevsaatlaeviaiisaaDpslgqipqnhfallevl.rlegseeqkrfffeevlaGeRfgn.alseagtk.nvkelktrlerdgdglrldGrkfystGalfahwipvlaldeegrev....lafvprdapGltviddWsgfGqrttasGtvlldevrveaeevv.pvqkafdrptlagpvaqliqaaidvGiaraaledtlafvrekarpwidsgvekasdDpltiaevgelairleaaeallerageavdaaaaepteesvaaasiavaeakvltteialeaaskLfelaGtrstlaelnldRhWRnaRtht 363
                 ++a ++ a+++a++  + D e  +    +  + + G +g+ + ++yGG + s++    v++ ++ +Dp+++ + + h +++++   + +se  k+++  ++ a + +g   lseag+  ++ +l+tr er++dg++l+G+k++ + +  a +  v+a    g  +    + +vprd+pGltv    + +G r+ +  tv+l++v+v++++v+ +v k +  +  +     +   a  vG+a++al+ tl +++e  r  + s v+   d   + ++v+++a++l+aa+ l+  a++       e  +  v +a    a ak++++++a  +as+ +el G  + ++++++++ +R+a++  
  MMETSP1137-20121227|1030_1 124 DAAARFaAEQVAPHVRRMDDECVMDPSIISGLFENGFMGVEIGEQYGGCGGSFTSALLVVEELARVDPAVSVMVDIHNTIVNNCfSAWASEPLKSTWLPRL-ASDCLGSfCLSEAGSGsDAFALRTRAERRQDGYVLNGEKMWISNSAEAGVFLVMANAAPGDGYrgitCFVVPRDTPGLTVGKKEDKLGIRASSTCTVRLENVEVPESAVLgEVGKGYRYAIEILNEGRIGIGAQMVGLAQGALDLTLPYLHE--RRQFGSAVA---DFQGVQHQVAQMATDLHAARLLVYDAARLK-----ESGKPFVKEA----AMAKLFSSQVAERVASRXVELMGGVGFTKDYGVEKLYRDAKIGA 469
                 455555166788888888***************************************************************87615668888888888775.5566664389999986367899********************99999998888877654433322225568**************************************94456778877777778888888999***************99..445556554...34457899****************999864.....4445555555....679*************************************9865 PP

>> TIGR03204  pimC_large: pimeloyl-CoA dehydrogenase, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.8   0.0   1.2e-24   1.3e-21      49     296 ..     155     406 ..     113     489 .. 0.76

  Alignments for each domain:
  == domain 1    score: 74.8 bits;  conditional E-value: 1.2e-24
   TIGR03204  49 lnkkgwgvshwpkqyggtgwtsvqdyifneelqa.apapqpl.afgvsmvgpviytfgneeqkkrflprianvddwwcqgfsepgsgsdlaslktkaekkgdkyiingqktwttlaqhadlifclcrtdatakkqegisfilvdmkskgitvrpiqtidg..gsevnevffddvevplenlvgeenkgwdyakfllgnertgia..rvgvskerirrikelaakvesggkpviedakfreklaaveielkalel 296
                 l ++g+       qygg g +     ++ eel    pa + +  +  ++v     ++ +e  k  +lpr+a  d      +se gsgsd  +l+t+ae++ d y++ng+k w + +  a + ++++ + +     +gi+  +v   + g+tv   +   g  +s    v +++vevp   ++ge  kg+ ya  +l + r gi    vg+++  +        + +  g  v + + +++++a +  +l+a  l
  MMETSP1137-20121227|1030_1 155 LFENGFMGVEIGEQYGGCGGSFTSALLVVEELARvDPAVSVMvDIHNTIVNNCFSAWASEPLKSTWLPRLAS-DCLGSFCLSEAGSGSDAFALRTRAERRQDGYVLNGEKMWISNSAEAGVFLVMANAAP-GDGYRGITCFVVPRDTPGLTVGKKEDKLGirASSTCTVRLENVEVPESAVLGEVGKGYRYAIEILNEGRIGIGaqMVGLAQGALDLTLPYLHERRQFGSAVADFQGVQHQVAQMATDLHAARL 406
                 5567777778899********999999999997515776554156778999*******************96.77777889*********************************9999987776666555.57789****************887765552245677899*******************************99522589888888766666666666667777777777777777777776554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (492 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        84  (0.0204778); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.40u 0.11s 00:00:00.51 Elapsed: 00:00:00.52
# Mc/sec: 1248.82
//
Query:       MMETSP1137-20121227|1031_1  [L=228]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (228 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        50  (0.0121892); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.14s 00:00:00.33 Elapsed: 00:00:00.26
# Mc/sec: 1157.44
//
Query:       MMETSP1137-20121227|1032_1  [L=201]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0003   16.5  21.8    0.00038   16.1  15.1    1.0  1  TIGR02168 SMC_prok_B: chromosome segregation protein SMC
  ------ inclusion threshold ------
      0.018   10.5  22.3      0.035    9.6  15.5    1.4  1  TIGR02169 SMC_prok_A: chromosome segregation protein SMC
      0.026   12.8   0.7      0.051   11.9   0.2    1.7  2  TIGR01444 fkbM_fam: methyltransferase, FkbM family
       0.29    7.9  23.6        3.5    4.3  16.4    1.9  1  TIGR01843 type_I_hlyD: type I secretion membrane fusion protein, HlyD family
       0.46    7.2  13.2      0.032   11.1   5.0    1.8  2  TIGR00414 serS: serine--tRNA ligase


Domain annotation for each model (and alignments):
>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1  15.1   4.7e-07   0.00038     701     883 ..       6     190 ..       2     198 .. 0.48

  Alignments for each domain:
  == domain 1    score: 16.1 bits;  conditional E-value: 4.7e-07
   TIGR02168 701 elkelekeleeleeeleklrkeleelerklselkkelerlekeveqleerlaqlekeleel......eeereeleeeleeaeeelkeaeeeieeleaeieqlkeelkalrealseleaeltelkeeaaekeerleslekeiaalekeleeleeqieeleeeiesleaeieeleeeleeleeeleellke 883
                 e+++l+ + ++l+++++ lr+++  l  +l+ ++ e+++l++++e+l++ +a  + e+ +l      + e++ l+++++e++++  e+e +++ + ++++  + + k+l ++ +el+ae ++l +e++e   ++++l++e+a+ ++ ++el++ ++e++e +e+l +ei+  ++++  l++e+e+ + +
  MMETSP1137-20121227|1032_1   6 EVQALRASERKLQQQVAMLRRREAALVLRLAVKEREAAELKATAETLRQAAAPPHTEVMSLmldpamNVEIRRLRDQVKELRSR--EKELQMDVEANQFQSGSIAGKKLIQKCKELQAENEQLGKEVSE--GKIQKLRAEAAMHKEYAQELRRGLSETREWVEQLLDEIDASQATILSLRREIESNKRK 190
                 455555555555555555555555555555555555555555555555555555555443311111123333333333333322..2222233333444455555555555555555555555555553..4455555555555555566666666666666655555555555555555555554443 PP

>> TIGR02169  SMC_prok_A: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6  15.5   4.3e-05     0.035     232     489 ..       6     187 ..       2     199 .. 0.40

  Alignments for each domain:
  == domain 1    score: 9.6 bits;  conditional E-value: 4.3e-05
   TIGR02169 232 elealekqkekiekelaeleeelekleeeieelekeleeiekkleelnkkieklgeeeqlavkekleelkaeiekleraiaekeeeledaeerlakaeaeidklkeeieelereieeekkereklkeelkelkeeleelraeleevdkeaaelreelkelkekleklkeelnelkreldrlleelkrleeelaelkaelerieekiaeleeeleelaeeikkaeqkleqlkedlekaekelrklkeeleklekelsel 489
                 e++al+++ +k+++++a l++  + l  ++  +e+e +e++++ e+l +        e + +  +   +++ei++l+++++e +++ ++++  ++  + +  +++   ++l ++ +e ++e e+l +e++e   + ++lrae++  ++ a+elr+ l+e +e +e+l +e++ ++ ++                                                                       +l +e+++ 
  MMETSP1137-20121227|1032_1   6 EVQALRASERKLQQQVAMLRRREAALVLRLAVKEREAAELKATAETLRQAAAP-PHTEVMSLMLD-PAMNVEIRRLRDQVKELRSREKELQMDVEANQFQSGSIAG--KKLIQKCKELQAENEQLGKEVSEG--KIQKLRAEAAMHKEYAQELRRGLSETREWVEQLLDEIDASQATIL----------------------------------------------------------------------SLRREIESN 187
                 45555555555555555555555555555555555444444444444333332.22222222211.1234444444444444444444444444444444443333..234444444444444444444432..234444444444444444444444444444444444444443322......................................................................222222222 PP

>> TIGR01444  fkbM_fam: methyltransferase, FkbM family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.2   6.2e-05     0.051      37     119 ..      16     100 ..       3     124 .. 0.69
   2 ?   -0.9   0.0      0.54   4.4e+02      48      79 ..     117     148 ..     105     188 .. 0.60

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 6.2e-05
   TIGR01444  37 kleenvklnnlkn.vkllnaAvgdregeleftvsddatgnsslaadselaees....eieVevvtlddlveeaglekvdllKiDvEGa 119
                 kl+++v+   +++   +l +Av +re  +e++ + ++ ++ +  +++e ++      +++Ve+++l d v+e +  + + l +DvE  
  MMETSP1137-20121227|1032_1  16 KLQQQVAMLRRREaALVLRLAVKERE-AAELKATAETLRQAAAPPHTEVMS-LmldpAMNVEIRRLRDQVKELR-SREKELQMDVEAN 100
                 45555444444444778888888886.677777766666666666663222.13666889*************9.899********76 PP

  == domain 2    score: -0.9 bits;  conditional E-value: 0.54
   TIGR01444  48 knvkllnaAvgdregeleftvsddatgnssla 79 
                 k+ +++n  +g++  e ++++ + + + ++ +
  MMETSP1137-20121227|1032_1 117 KELQAENEQLGKEVSEGKIQKLRAEAAMHKEY 148
                 44666666666666666666655444433333 PP

>> TIGR01843  type_I_hlyD: type I secretion membrane fusion protein, HlyD family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3  16.4    0.0042       3.5      87     268 ..      11     191 ..       4     194 .. 0.64

  Alignments for each domain:
  == domain 1    score: 4.3 bits;  conditional E-value: 0.0042
   TIGR01843  87 esqvlaleaeva...rlraeanseeaiefpdillsaedavaelvkeqeslfesrksalraqle.sleaqikqleaeleglqaqlqalrqqleliseelealrkLkekglvsrlelLelerer...aelqgelaeleaeleklkaeldeleeklqeleqkfreevseelreaqarlaeleeelskardrl 268
                 +++ ++l+ +va   r +a +  + a +    +++  + +a++ +  ++      ++++ +l+ +++ +i++l++++++l+++ ++l  q+++ +++++ + +++ k+l+++ + L++e+e+   +  +g++++l+ae++  k+ ++el++ l e++ +++e++++e++ +qa++ +l+ e +++++++
  MMETSP1137-20121227|1032_1  11 RASERKLQQQVAmlrRREAALVLRLAVKER--EAA--ELKATAETLRQAAAPPHTEVMSLMLDpAMNVEIRRLRDQVKELRSREKEL--QMDVEANQFQ-SGSIAGKKLIQKCKELQAENEQlgkEVSEGKIQKLRAEAAMHKEYAQELRRGLSETR-EWVEQLLDEIDASQATILSLRREIESNKRKA 191
                 333333333333000222322222222222..111..12222223333333344445555554357788888888888888876655..5666666665.579****************9984334568999*******************999976.79*********************99998876 PP

>> TIGR00414  serS: serine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.2      0.12        96      46      81 ..       7      40 ..       2      66 .. 0.44
   2 ?   11.1   5.0   3.9e-05     0.032       7     103 ..      79     174 ..      67     191 .. 0.71

  Alignments for each domain:
  == domain 1    score: -0.4 bits;  conditional E-value: 0.12
   TIGR00414 46 ieelqkkrnelskeigkkkaekkdkieelkkelkel 81
                ++ l++ + +l+++++  ++++++ +  l+  +ke 
  MMETSP1137-20121227|1032_1  7 VQALRASERKLQQQVAMLRRREAALV--LRLAVKER 40
                44555555555555555444444321..11112111 PP

  == domain 2    score: 11.1 bits;  conditional E-value: 3.9e-05
   TIGR00414   7 lrenlelvkeklkarglsveidleklselddklkkllskieelqkkrnelskeigkkkaekkdkieelkke.lkelkeeleeleaelkeleeeleekl 103
                 lr++++  + + ++++l ++++ +++++ + + kkl++k +elq+++++l ke+ + k +k +  + ++ke  +el++ l+e+ + +++l +e++   
  MMETSP1137-20121227|1032_1  79 LRDQVK--ELRSREKELQMDVEANQFQSGSIAGKKLIQKCKELQAENEQLGKEVSEGKIQKLRAEAAMHKEyAQELRRGLSETREWVEQLLDEIDASQ 174
                 333333..335567788889999999999999************************999988864445555145667777777777766666666554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (201 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       370  (0.0901999); expected 82.0 (0.02)
Passed bias filter:                      152  (0.0370551); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.38u 0.20s 00:00:00.58 Elapsed: 00:00:00.52
# Mc/sec: 510.19
//
Query:       MMETSP1137-20121227|1033_1  [L=46]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (46 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       107  (0.0260848); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.17s 00:00:00.29 Elapsed: 00:00:00.28
# Mc/sec: 209.36
//
Query:       MMETSP1137-20121227|1034_1  [L=150]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (150 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        99  (0.0241346); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.12s 00:00:00.31 Elapsed: 00:00:00.36
# Mc/sec: 549.95
//
Query:       MMETSP1137-20121227|1035_1  [L=219]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      2e-05   22.5   0.0    2.9e-05   22.0   0.0    1.1  1  TIGR03615 RutF: pyrimidine utilization flavin reductase protein F


Domain annotation for each model (and alignments):
>> TIGR03615  RutF: pyrimidine utilization flavin reductase protein F
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.0   0.0     7e-09   2.9e-05      13     136 ..      54     186 ..      49     200 .. 0.78

  Alignments for each domain:
  == domain 1    score: 22.0 bits;  conditional E-value: 7e-09
   TIGR03615  13 laaav.niittdGpaGraGfta.savcsvtdeppt.llvclnrsasvyevlkengtlcvntlaagqeelsnlfGGktpve.erfa....ag.ewetlvtgapvledalvsfdcrisqsvsvGthdilfcevea 136
                 l+aav  ++t dG  G   +   + v  v+ +p     v l r++   + + + +   +  l++ ++++ n++G ++  + +++a    ag   ++++   pvl++a+ +++ + +  +s G hd+ +c++  
  MMETSP1137-20121227|1035_1  54 LSAAVySLLTLDGENGMPNMNImTYVSPVAHAPERwYAVSLLRGTLSRDNFMAANGGVLQVLSERHADVVNVLGKQSGRDvDKLAlldqAGcGTTVVNERWPVLSKAIGCMEVEAVSYHSCGDHDVALCRMIW 186
                 56776369999*****99987526788899999862579999*99888888777777899**************998764377763322220233445568****************************9865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (219 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        54  (0.0131643); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.19u 0.15s 00:00:00.34 Elapsed: 00:00:00.30
# Mc/sec: 963.52
//
Query:       MMETSP1137-20121227|1036_1  [L=77]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (77 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        43  (0.0104827); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.11s 00:00:00.25 Elapsed: 00:00:01.19
# Mc/sec: 85.40
//
Query:       MMETSP1137-20121227|1037_1  [L=315]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (315 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        67  (0.0163335); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.15s 00:00:00.41 Elapsed: 00:00:00.88
# Mc/sec: 472.46
//
Query:       MMETSP1137-20121227|1038_1  [L=412]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (412 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        97  (0.023647); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.15s 00:00:00.43 Elapsed: 00:00:00.38
# Mc/sec: 1431.04
//
Query:       MMETSP1137-20121227|1039_1  [L=155]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (155 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       136  (0.0331546); expected 82.0 (0.02)
Passed bias filter:                      104  (0.0253535); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.18s 00:00:00.37 Elapsed: 00:00:00.38
# Mc/sec: 538.38
//
Query:       MMETSP1137-20121227|1040_1  [L=371]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        1.7    5.7   6.8        1.1    6.3   1.9    2.4  3  TIGR03467 HpnE: squalene-associated FAD-dependent desaturase


Domain annotation for each model (and alignments):
>> TIGR03467  HpnE: squalene-associated FAD-dependent desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   1.9   0.00026       1.1       5      52 ..       2      52 ..       1      62 [. 0.84
   2 ?   -0.3   0.0     0.027   1.1e+02     217     278 ..     121     187 ..     114     209 .. 0.78
   3 ?   -1.5   0.1     0.064   2.6e+02     399     429 ..     335     364 ..     329     365 .. 0.85

  Alignments for each domain:
  == domain 1    score: 6.3 bits;  conditional E-value: 0.00026
   TIGR03467  5 GgGlAGLaAAveLaraG...vrvtllEarrqlGGRarsfedgslgetiDng 52
                G+G     AA +L r+G    r+ + Ea   +GGR rs   ++ g + D g
  MMETSP1137-20121227|1040_1  2 GAGATAAVAARRLRREGvsaERIVVWEALASVGGRFRSEMSSKDGGLTDTG 52
                788888889999*****4444789**************9999998888887 PP

  == domain 2    score: -0.3 bits;  conditional E-value: 0.027
   TIGR03467 217 ylesrggevrlgtrvreleasaggiralveaaeet.....laadavvlAvpperaasllpeedlaak 278
                 +l+++g++v+   r+ +l++ ++++ +  ++ e +       + avvl  p  ++  l+ + ++ + 
  MMETSP1137-20121227|1040_1 121 MLTEAGVQVCCLRRLLQLKLVEDEVSVGFRTWEASfdgasERFGAVVLTQPVPQMLPLFSTGEASEL 187
                 6889999999999999999999998776664444444444889999999999999999988655555 PP

  == domain 3    score: -1.5 bits;  conditional E-value: 0.064
   TIGR03467 399 lfLAGDwtatgyPATlEgAvrSGvqAAeavl 429
                 l+LAGD  +  + +   g ++SG+  A a+l
  MMETSP1137-20121227|1040_1 335 LVLAGDAFS-SLGSRFDGCAQSGEHXARALL 364
                 899999876.699999********9999886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (371 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        90  (0.0219405); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.29u 0.15s 00:00:00.43 Elapsed: 00:00:00.53
# Mc/sec: 923.92
//
Query:       MMETSP1137-20121227|1041_1  [L=274]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (274 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        81  (0.0197465); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.14s 00:00:00.36 Elapsed: 00:00:00.36
# Mc/sec: 1004.58
//
Query:       MMETSP1137-20121227|1042_1  [L=177]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.3e-05   20.0   0.1      0.041    9.7   0.0    2.2  2  TIGR00870 trp: transient-receptor-potential calcium channel protein
  ------ inclusion threshold ------
      0.047   10.0   0.0      0.069    9.4   0.0    1.1  1  TIGR03960 rSAM_fuse_unch: radical SAM family uncharacterized protein


Domain annotation for each model (and alignments):
>> TIGR00870  trp: transient-receptor-potential calcium channel protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.5   0.0   4.7e-05     0.096     130     159 ..      64      93 ..      27      97 .. 0.88
   2 !    9.7   0.0     2e-05     0.041     130     158 ..      97     125 ..      94     139 .. 0.88

  Alignments for each domain:
  == domain 1    score: 8.5 bits;  conditional E-value: 4.7e-05
   TIGR00870 130 kgitalilAihkqnyeivklLlekgasvea 159
                 +g t+l  A+    + +v+lLl+ ga+v a
  MMETSP1137-20121227|1042_1  64 NGRTPLLAAARFGHVRVVTLLLDAGAEVDA 93 
                 699************************987 PP

  == domain 2    score: 9.7 bits;  conditional E-value: 2e-05
   TIGR00870 130 kgitalilAihkqnyeivklLlekgasve 158
                  g t++++A+    ye+v+ Ll  ga ++
  MMETSP1137-20121227|1042_1  97 SGVTPIMVAAAAGHYECVQRLLGHGACIS 125
                 689***********************997 PP

>> TIGR03960  rSAM_fuse_unch: radical SAM family uncharacterized protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   0.0   3.3e-05     0.069     348     395 ..     124     171 ..     121     173 .. 0.87

  Alignments for each domain:
  == domain 1    score: 9.4 bits;  conditional E-value: 3.3e-05
   TIGR03960 348 lekvqkvrkssltfapeaGsqrlrdvinkgvteeeilkgakeafegGw 395
                 ++ v++  ks++ +a eaG qr+ + ++k  + e  ++ + + f + w
  MMETSP1137-20121227|1042_1 124 ISTVDDTGKSAMDWAREAGQQRVLELMEKHAAGEASVTVSPKGFFSSW 171
                 6789999**********************9999988887777776666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (177 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        89  (0.0216967); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.21u 0.10s 00:00:00.31 Elapsed: 00:00:00.31
# Mc/sec: 753.62
//
Query:       MMETSP1137-20121227|1043_1  [L=182]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (182 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        67  (0.0163335); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.14s 00:00:00.34 Elapsed: 00:00:00.30
# Mc/sec: 800.73
//
Query:       MMETSP1137-20121227|1044_1  [L=327]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (327 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        86  (0.0209654); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.15s 00:00:00.41 Elapsed: 00:00:00.36
# Mc/sec: 1198.90
//
Query:       MMETSP1137-20121227|1045_1  [L=313]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (313 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        69  (0.0168211); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.18s 00:00:00.43 Elapsed: 00:00:00.88
# Mc/sec: 469.46
//
Query:       MMETSP1137-20121227|1048_1  [L=133]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (133 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        36  (0.00877621); expected 82.0 (0.02)
Passed bias filter:                       36  (0.00877621); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.13s 00:00:00.27 Elapsed: 00:00:00.27
# Mc/sec: 650.17
//
Query:       MMETSP1137-20121227|1049_1  [L=306]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.8e-59  197.7   0.0    9.1e-59  197.5   0.0    1.0  1  TIGR00580 mfd: transcription-repair coupling factor
    3.8e-22   76.6   0.0    3.8e-22   76.6   0.0    1.2  1  TIGR00643 recG: ATP-dependent DNA helicase RecG
  ------ inclusion threshold ------
      0.039   10.3   0.0      0.056    9.8   0.0    1.2  1  TIGR00595 priA: primosomal protein N'


Domain annotation for each model (and alignments):
>> TIGR00580  mfd: transcription-repair coupling factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  197.5   0.0   6.6e-62   9.1e-59     242     511 ..      21     305 ..       3     306 .] 0.79

  Alignments for each domain:
  == domain 1    score: 197.5 bits;  conditional E-value: 6.6e-62
   TIGR00580 242 sesqaerlksllkesdiaakvtaesskllkeavkavleg.elsegfalveaelaviteselfgervkakkkkkkkkskat.....eelaelkegdlvVHkdhGiGkflglek....lkvagierdyleleYagedklyvPveqlelisryvgsee....kkpeldkl.ggkswektkakvkkkvkeiaekLielyakRkaskghafskdeeeqaefedafpfeeTeDQlkaieevkkDle.kekpmDRlvcGDvGfGKTEvamrAafkavldgkQvavlvPTTlLa 511
                  e++++ l +++k++    +  a +++l k+  ++  +  +++++  +++a    + +s+ +++ v+   +++ + s+++      + ++++ gd+vVH  +G+G+f g+ k    ++ +     +l++++ ++  l +P +q ++++ ++ +ee      ++ld+    kswe++kak+  +v e+a++L+++ya R++s     ++d+e +a+fe+ f +e T+DQl+  ee+++D++ +++pmDRlvcGDvGfGKTEvamrAa+ av+ g+Qva+l+PTT+La
  MMETSP1137-20121227|1049_1  21 HEANRDTLDAVVKANGSDKAXXAVRTALKKPGSAKAASRtAVKKSKGTTTAATTTVKQSDSAKAVVADGTQDSASPSNPQlqlptLKPSRIRRGDYVVHSAFGVGRFDGVFKspyfIEDKVHYDKFLKVQFKDR-ALEIPTDQSKVLKLFRRQEEvddyAPVKLDSTrARKSWERRKAKAAANVLEVAADLLKMYASRQQSGRPPCPPDDERFAKFESMFAYEPTPDQLTVFEEIRRDMCeSDRPMDRLVCGDVGFGKTEVAMRAAYRAVCAGRQVAFLAPTTVLA 305
                 455556666666655444444444455555555544444478888888888888888888888888777777777666664444456788999****************9885554455566678******998.8**************9887632223456665424689*******************************************************************72689*****************************************8 PP

>> TIGR00643  recG: ATP-dependent DNA helicase RecG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.6   0.0   2.8e-25   3.8e-22     186     297 ..     193     305 ..      38     306 .] 0.80

  Alignments for each domain:
  == domain 1    score: 76.6 bits;  conditional E-value: 2.8e-25
   TIGR00643 186 arkrlifeellllqlallarrleekkqqsaksvavseellekllasLPfelTeaQkravkeileDl.ksdvpmnRLlqGdVGsGKTvVavlallaviesGyqvalmaPTeiLA 297
                  r++ +++  +l   a l +++ +++q   ++  +++e+ +k+ +   +e+T +Q  + +ei +D+ +sd+pm RL+ GdVG GKT Va+ a+++++ +G qva++aPT +LA
  MMETSP1137-20121227|1049_1 193 ERRKAKAAANVLEVAADLLKMYASRQQSGRPPCPPDDERFAKFESMFAYEPTPDQLTVFEEIRRDMcESDRPMDRLVCGDVGFGKTEVAMRAAYRAVCAGRQVAFLAPTTVLA 305
                 3333333333222222333344444454445555566****************************64799******************************************9 PP

>> TIGR00595  priA: primosomal protein N'
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.0   4.1e-05     0.056       1      38 [.     268     305 ..     268     306 .] 0.92

  Alignments for each domain:
  == domain 1    score: 9.8 bits;  conditional E-value: 4.1e-05
   TIGR00595   1 lleGvtGSGKtEvylkviekvlakgksvlvLvPEiaLt 38 
                 l+ G  G GKtEv ++++ ++   g++v +L P   L+
  MMETSP1137-20121227|1049_1 268 LVCGDVGFGKTEVAMRAAYRAVCAGRQVAFLAPTTVLA 305
                 67899***************************987765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (306 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       178  (0.0433935); expected 82.0 (0.02)
Passed bias filter:                      122  (0.0297416); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.30u 0.14s 00:00:00.44 Elapsed: 00:00:00.56
# Mc/sec: 708.57
//
Query:       MMETSP1137-20121227|1050_1  [L=225]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.3e-22   77.7   0.2    1.9e-22   77.2   0.1    1.2  1  TIGR01068 thioredoxin: thioredoxin
    2.5e-12   44.9   0.0    4.1e-12   44.2   0.0    1.3  1  TIGR01126 pdi_dom: protein disulfide-isomerase domain
      1e-09   36.3   0.0    1.2e-09   36.1   0.0    1.1  1  TIGR01130 ER_PDI_fam: protein disulfide isomerases
    0.00091   17.6   0.1     0.0013   17.1   0.0    1.3  1  TIGR02196 GlrX_YruB: glutaredoxin-like protein, YruB-family
     0.0078   12.1   0.1     0.0087   11.9   0.0    1.1  1  TIGR03311 Se_dep_Molyb_1: selenium-dependent molybdenum hydroxylase 1
     0.0092   12.4   0.1      0.011   12.2   0.0    1.1  1  TIGR00424 APS_reduc: 5'-adenylylsulfate reductase, thioredoxin-independent
  ------ inclusion threshold ------
      0.019   12.4   0.1      0.045   11.2   0.1    1.6  1  TIGR00385 dsbE: periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily


Domain annotation for each model (and alignments):
>> TIGR01068  thioredoxin: thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.2   0.1   3.3e-25   1.9e-22      12      97 ..     132     216 ..     122     220 .. 0.91

  Alignments for each domain:
  == domain 1    score: 77.2 bits;  conditional E-value: 3.3e-25
   TIGR01068  12 ssdklvlvDfwAeWCgpCkmlaPvleelakeleekvkvvKlnvdeeqeiaakygirsiPtlllfkngkevkrvvGakpkaalkeli 97 
                 +s  + +vDf A+WC pC++l Pv++ la++ ++ + +vK++vde +e++a++++ ++Pt+ ++k+g+ v+++ Ga + +al++++
  MMETSP1137-20121227|1050_1 132 ESPLALVVDFTADWCKPCQALKPVFAALAAKHKQAALFVKVDVDELEEVSAAAKVVAMPTIQVYKQGNIVDKTTGART-EALTTML 216
                 4567899*********************************************************************98.5666665 PP

>> TIGR01126  pdi_dom: protein disulfide-isomerase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.2   0.0   7.1e-15   4.1e-12      16      94 ..     136     210 ..     125     218 .. 0.88

  Alignments for each domain:
  == domain 1    score: 44.2 bits;  conditional E-value: 7.1e-15
   TIGR01126  16 dvlvefyaPWCGhCkklaPeyeklakelkkeeekvkiakvdataekelaskfkvsgfPtlkffkkgkkepvdyeGeRea 94 
                 +++v+f+a WC  C++l P++  la++ k++       kvd ++ +e+++  kv + Pt++++k+g+    + +G+R++
  MMETSP1137-20121227|1050_1 136 ALVVDFTADWCKPCQALKPVFAALAAKHKQA---ALFVKVDVDELEEVSAAAKVVAMPTIQVYKQGNI-VDKTTGARTE 210
                 5789**********************99975...5899****************************95.7778888876 PP

>> TIGR01130  ER_PDI_fam: protein disulfide isomerases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.1   0.0     2e-12   1.2e-09      15      99 ..     131     211 ..     117     225 .] 0.83

  Alignments for each domain:
  == domain 1    score: 36.1 bits;  conditional E-value: 2e-12
   TIGR01130  15 ikenelvLveFYAPWCGHCksLaPeYekAAeelkkkspkvklakvDateekelaqkygvsGyPtLkifrngesssdYnGpReaeg 99 
                 +++  +++v F A WC  C++L+P +++ A++ k+++     +kvD  e +e++   +v   Pt++++++g+ + + +G+R++ +
  MMETSP1137-20121227|1050_1 131 VESPLALVVDFTADWCKPCQALKPVFAALAAKHKQAA---LFVKVDVDELEEVSAAAKVVAMPTIQVYKQGNIVDKTTGARTE-A 211
                 5555667899****************98888766666...899****************************999999999985.3 PP

>> TIGR02196  GlrX_YruB: glutaredoxin-like protein, YruB-family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.0   2.2e-06    0.0013       5      57 ..     141     195 ..     137     217 .. 0.83

  Alignments for each domain:
  == domain 1    score: 17.1 bits;  conditional E-value: 2.2e-06
   TIGR02196   5 YttpwCppCkkakeyLkskgiafeeid..vekdsaaaeellkklgqrsvPvivig 57 
                 +t +wC+pC+++k  + +   ++++    v+ d  + ee+    +  + P+i++ 
  MMETSP1137-20121227|1050_1 141 FTADWCKPCQALKPVFAALAAKHKQAAlfVKVDVDELEEVSAAAKVVAMPTIQVY 195
                 799*****************9998754339**********************975 PP

>> TIGR03311  Se_dep_Molyb_1: selenium-dependent molybdenum hydroxylase 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.9   0.0   1.5e-05    0.0087     263     319 ..     157     213 ..     118     221 .. 0.86

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 1.5e-05
   TIGR03311 263 akskealkeiknlvkvdyeeleplsspeealaedapkihekGnilskeklkrGdaee 319
                 a    + k++  +vkvd +ele +s++++ +a  + +++++Gni+ k+   r +a  
  MMETSP1137-20121227|1050_1 157 AALAAKHKQAALFVKVDVDELEEVSAAAKVVAMPTIQVYKQGNIVDKTTGARTEALT 213
                 555556677888*********************************999988887755 PP

>> TIGR00424  APS_reduc: 5'-adenylylsulfate reductase, thioredoxin-independent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.2   0.0   1.9e-05     0.011     360     436 ..     121     195 ..      84     208 .. 0.71

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 1.9e-05
   TIGR00424 360 qgienllkleerkeawlvv.lyapwcpfcqameasyvelaeklagsgvkvakfradgdqkefakqelqlgsfptillf 436
                 +  e  l l       lvv + a wc+ cqa++  +  la+k       v   + d d+ e      ++ ++pti ++
  MMETSP1137-20121227|1050_1 121 EDWEAALALSVESPLALVVdFTADWCKPCQALKPVFAALAAKHKQAALFV---KVDVDELEEVSAAAKVVAMPTIQVY 195
                 555666666655554555526799*************9999875544332...5666666666666777777777766 PP

>> TIGR00385  dsbE: periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.1   7.6e-05     0.045      63      91 ..     134     162 ..     116     176 .. 0.84

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 7.6e-05
   TIGR00385  63 gklvLlnvwasWCptCraehplLkelake 91 
                 +   ++++ a WC +C+a  p+   la++
  MMETSP1137-20121227|1050_1 134 PLALVVDFTADWCKPCQALKPVFAALAAK 162
                 556678999*****************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (225 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       120  (0.029254); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                        18  (0.0043881); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.23u 0.15s 00:00:00.38 Elapsed: 00:00:00.65
# Mc/sec: 456.89
//
Query:       MMETSP1137-20121227|1051_1  [L=184]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.4e-10   37.9   0.0      5e-10   37.3   0.0    1.3  1  TIGR00251 TIGR00251: TIGR00251 family protein


Domain annotation for each model (and alignments):
>> TIGR00251  TIGR00251: TIGR00251 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.3   0.0   1.2e-13     5e-10      30      83 ..     116     175 ..      88     179 .. 0.76

  Alignments for each domain:
  == domain 1    score: 37.3 bits;  conditional E-value: 1.2e-13
   TIGR00251  30 rkrvevkikaPakeGkAnrelikffkeiFkk...dveivsG.eksrqKtikikd..krdl 83 
                   +++v i+a a+eG+An e+ik+f e  ++   +v++  G +ksr+Kti i++  ++++
  MMETSP1137-20121227|1051_1 116 TTELQVDIHAAAREGEANAEVIKVFAELVRVpklQVQLTVGtRKSRSKTIIIQGlsPQQV 175
                 3689**************************9999****988469********98766665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (184 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        94  (0.0229157); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.18u 0.11s 00:00:00.28 Elapsed: 00:00:00.31
# Mc/sec: 783.42
//
Query:       MMETSP1137-20121227|1053_1  [L=232]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00056   17.1   0.0     0.0026   14.9   0.0    1.9  2  TIGR00543 isochor_syn: isochorismate synthase


Domain annotation for each model (and alignments):
>> TIGR00543  isochor_syn: isochorismate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.1     0.024        98     212     261 ..      67     116 ..      18     120 .. 0.57
   2 !   14.9   0.0   6.3e-07    0.0026       2      51 ..     162     216 ..     161     231 .. 0.84

  Alignments for each domain:
  == domain 1    score: -0.2 bits;  conditional E-value: 0.024
   TIGR00543 212 reLekiceslevsekpellklakvqHLytkikarlkkeksllkllkqLhP 261
                 ++++++ + ++ s   e ++    q  +t+++ ++ + ++ +++l+q hP
  MMETSP1137-20121227|1053_1  67 QKMQQMLHAATPSISSENVNSMSSQFCCTRLEIEVLASADPVHWLMQQHP 116
                 22222222222222222233333344455555555555555555555555 PP

  == domain 2    score: 14.9 bits;  conditional E-value: 6.3e-07
   TIGR00543   2 rlvggfrfdeeek....weefaealfvlpevlveeegestlltleikaesea.ee 51 
                 r++gg+rfd++++    w+ f+ + f+lp+  ++  +++++  + + ++ ++ +e
  MMETSP1137-20121227|1053_1 162 RYYGGLRFDKNRScgeeWSCFGGGIFILPQFDLQLCEGRCYFGCXLRWHAGSaDE 216
                 899********99****************************99999998776433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (232 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        84  (0.0204778); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.21u 0.16s 00:00:00.37 Elapsed: 00:00:00.39
# Mc/sec: 785.17
//
Query:       MMETSP1137-20121227|1054_1  [L=162]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (162 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        72  (0.0175524); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.15s 00:00:00.32 Elapsed: 00:00:00.34
# Mc/sec: 628.89
//
Query:       MMETSP1137-20121227|1055_1  [L=418]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (418 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       107  (0.0260848); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.15s 00:00:00.46 Elapsed: 00:00:00.44
# Mc/sec: 1253.90
//
Query:       MMETSP1137-20121227|1056_1  [L=294]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (294 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       158  (0.0385178); expected 82.0 (0.02)
Passed bias filter:                      100  (0.0243784); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.14s 00:00:00.39 Elapsed: 00:00:00.51
# Mc/sec: 760.88
//
Query:       MMETSP1137-20121227|1057_1  [L=202]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00014   19.0   1.5    0.00037   17.7   0.0    2.1  2  TIGR00601 rad23: UV excision repair protein Rad23


Domain annotation for each model (and alignments):
>> TIGR00601  rad23: UV excision repair protein Rad23
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.1     0.019        80      14      39 ..      27      52 ..      18      59 .. 0.81
   2 !   17.7   0.0   8.9e-08   0.00037      39      73 ..     129     163 ..     121     199 .. 0.87

  Alignments for each domain:
  == domain 1    score: 0.1 bits;  conditional E-value: 0.019
   TIGR00601 14 kidlepdetvkelKekiesekgkday 39
                +i ++  ++v  lK++ie+ + k + 
  MMETSP1137-20121227|1057_1 27 QILVDETTKVADLKKRIEELHRKGEH 52
                67789999**********98877655 PP

  == domain 2    score: 17.7 bits;  conditional E-value: 8.9e-08
   TIGR00601  39 yevaqqkLiyaGkiLsDdktvkeykikekdfvvvm 73 
                  + a+q+L ++GkiL+D++ ++e +++ ++ +vv 
  MMETSP1137-20121227|1057_1 129 LPAAKQRLSFNGKILEDEQLLEEIGVQHDEEIVVE 163
                 5899***************************9985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (202 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       151  (0.0368113); expected 82.0 (0.02)
Passed bias filter:                      100  (0.0243784); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.20u 0.13s 00:00:00.33 Elapsed: 00:00:00.35
# Mc/sec: 761.77
//
Query:       MMETSP1137-20121227|1058_1  [L=171]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (171 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        68  (0.0165773); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.17s 00:00:00.35 Elapsed: 00:00:00.35
# Mc/sec: 644.86
//
Query:       MMETSP1137-20121227|1059_1  [L=325]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (325 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        83  (0.020234); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.17s 00:00:00.43 Elapsed: 00:00:00.39
# Mc/sec: 1099.91
//
Query:       MMETSP1137-20121227|1060_1  [L=116]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (116 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        72  (0.0175524); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.10s 00:00:00.26 Elapsed: 00:00:00.27
# Mc/sec: 567.06
//
Query:       MMETSP1137-20121227|1061_1  [L=102]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00091   17.2   0.0      0.001   17.0   0.0    1.1  1  TIGR01662 HAD-SF-IIIA: HAD hydrolase, family IIIA
  ------ inclusion threshold ------
      0.033   11.9   0.0      0.037   11.8   0.0    1.3  1  TIGR01656 Histidinol-ppas: histidinol-phosphate phosphatase domain


Domain annotation for each model (and alignments):
>> TIGR01662  HAD-SF-IIIA: HAD hydrolase, family IIIA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.0   4.9e-07     0.001       2      71 ..      16      81 ..      15      99 .. 0.83

  Alignments for each domain:
  == domain 1    score: 17.0 bits;  conditional E-value: 4.9e-07
   TIGR01662  2 lvvlDlDgtLiddvdyvteedeaelypevidalaelkkeGykvvivtNqsgigrgkesveevsekvesll 71
                +v+lD+Dg+L+  ++ ++e  +  + p   ++la l +e +  v++++   + +  +++e+vs+ +++ l
  MMETSP1137-20121227|1061_1 16 VVFLDVDGVLN--SRATRENGDHDPHPALVAELARLVNECHAHVVLSSTWRLET--KNFERVSGALQDGL 81
                69*********..78888888899999999999999999999999999994554..77999999888755 PP

>> TIGR01656  Histidinol-ppas: histidinol-phosphate phosphatase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   1.8e-05     0.037       2      49 ..      16      58 ..      15     101 .. 0.80

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 1.8e-05
   TIGR01656  2 alllDrDGvlnedsqsdlavkslddlqlepklvdallklkaaaytlvv 49
                +++lD DGvln         +++ d   +p lv +l++l ++  + vv
  MMETSP1137-20121227|1061_1 16 VVFLDVDGVLNSRAT-----RENGDHDPHPALVAELARLVNECHAHVV 58
                69*********9887.....5777888888888887777666555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (102 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       111  (0.02706); expected 82.0 (0.02)
Passed bias filter:                      105  (0.0255973); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.15u 0.14s 00:00:00.29 Elapsed: 00:00:00.28
# Mc/sec: 464.24
//
Query:       MMETSP1137-20121227|1062_1  [L=635]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.1e-09   33.1   0.7    7.3e-09   32.6   0.5    1.1  1  TIGR00990 3a0801s09: mitochondrial precursor proteins import receptor
    1.2e-06   26.1   0.1    2.9e-06   24.8   0.0    1.6  1  TIGR02521 type_IV_pilW: type IV pilus biogenesis/stability protein PilW
      8e-05   20.2   2.5    0.00044   17.8   0.1    2.3  2  TIGR02552 LcrH_SycD: type III secretion low calcium response chaperone LcrH/SycD
    0.00057   15.7   6.4     0.0015   14.3   4.4    1.5  1  TIGR02917 PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein
     0.0051   12.9   1.9     0.0053   12.8   0.2    1.7  1  TIGR03939 PGA_TPR_OMP: poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA


Domain annotation for each model (and alignments):
>> TIGR00990  3a0801s09: mitochondrial precursor proteins import receptor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.6   0.5   8.9e-12   7.3e-09     113     217 ..     404     518 ..     382     547 .. 0.77

  Alignments for each domain:
  == domain 1    score: 32.6 bits;  conditional E-value: 8.9e-12
   TIGR00990 113 ssvvnlseeerkkyaakl...kekGnkayrnkdfdkaielyskall.lkedPv......yysnraacynaladlekvvedttaaleldpdyvkalnrranaydqlgkyadalldl 217
                 s++++  ++   ++aa++   k +Gn+a++  ++++a  ly+ al  +  d v        +nraac+  l+ + +  ed+ a ++++p++ k   r a a +   ++ +a   +
  MMETSP1137-20121227|1062_1 404 SAQAQSEQSAEARHAARIgfkKTAGNEAFKASEYQQAAVLYTEALSlCTTDAVrdeeaiIRCNRAACFLKLGRYSQAREDAEACVAIKPEHAKGHFRLALALQAEERFGEACHAF 518
                 444444444444455544334789********************96255555422222289****************************************99999999997666 PP

>> TIGR02521  type_IV_pilW: type IV pilus biogenesis/stability protein PilW
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.8   0.0   3.5e-09   2.9e-06      27     101 ..     457     531 ..     445     533 .. 0.93

  Alignments for each domain:
  == domain 1    score: 24.8 bits;  conditional E-value: 3.5e-09
   TIGR02521  27 rekaakirvqLaleYleqgdlekAkenlekAleldpkdadanlalAlyyqqlgelekAeesfrkAltlkpnngdv 101
                 r + a ir + a+ +l+ g + +A+e+ e  ++++p+ a+ +  lAl++q + + ++A ++f++ ltl+p n d+
  MMETSP1137-20121227|1062_1 457 RDEEAIIRCNRAACFLKLGRYSQAREDAEACVAIKPEHAKGHFRLALALQAEERFGEACHAFNRVLTLEPRNKDA 531
                 5566889****************************************************************9986 PP

>> TIGR02552  LcrH_SycD: type III secretion low calcium response chaperone LcrH/SycD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.1   0.7   0.00013      0.11      64     119 ..     433     494 ..     423     498 .. 0.77
   2 !   17.8   0.1   5.3e-07   0.00044      30      87 ..     473     530 ..     467     547 .. 0.70

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 0.00013
   TIGR02552  64 alkeyeeAiaaYalaaal......dlddprpvyhaaecllalgekeeAlkaLklaieiaeek 119
                 +++ey++A+  Y+ a++l      + ++++    +a c+l+lg++ +A+++ +++++i+ e 
  MMETSP1137-20121227|1062_1 433 KASEYQQAAVLYTEALSLcttdavRDEEAIIRCNRAACFLKLGRYSQAREDAEACVAIKPEH 494
                 56899999999998887622211123445667889********************9998876 PP

  == domain 2    score: 17.8 bits;  conditional E-value: 5.3e-07
   TIGR02552  30 qqgkyeeAeklFqlLaaldpteakywlgLaaclqalkeyeeAiaaYalaaaldlddpr 87 
                 + g+y++A++  ++ +a+ p  ak +++La++lqa +++ eA +a+ + ++l++ + +
  MMETSP1137-20121227|1062_1 473 KLGRYSQAREDAEACVAIKPEHAKGHFRLALALQAEERFGEACHAFNRVLTLEPRNKD 530
                 4577777777777777777777777777777777777777777777777777766654 PP

>> TIGR02917  PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   4.4   1.8e-06    0.0015     670     805 ..     387     530 ..     373     556 .. 0.63

  Alignments for each domain:
  == domain 1    score: 14.3 bits;  conditional E-value: 1.8e-06
   TIGR02917 670 eaqlllaqLlleekrleeAlkllkelekqkpkaalgf.eleGdlalrqkdykaAiqaykkalkrapss.....qtvikLaea..llasgntaeAaktleawLkehpkdavlrtalAelylaekdedkAakhYqtvvkkapdnav 805
                 e q++la +  +++   +A   +++  +++  a  gf +  G+ a++  +y++A+  y++al++  ++     +++i+ ++a   l+ g+ ++A + +ea    +p++a+  + lA  + ae++  +A  +++ v+ ++p n  
  MMETSP1137-20121227|1062_1 387 ERQRVLALMREQAEHAASAQAQSEQSAEARHAARIGFkKTAGNEAFKASEYQQAAVLYTEALSLCTTDavrdeEAIIRCNRAacFLKLGRYSQAREDAEACVAIKPEHAKGHFRLALALQAEERFGEACHAFNRVLTLEPRNKD 530
                 556666666666666666655555544444444444414567777777777777777777777655542222245666555511455677777777777777777777777777777777777777777777777777776654 PP

>> TIGR03939  PGA_TPR_OMP: poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.8   0.2   6.4e-06    0.0053      79     163 ..     487     576 ..     469     594 .. 0.73

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 6.4e-06
   TIGR03939  79 y.slvglparelealAkAaRnekqwdkAlelyrkllqrdPknpdlllGlaltladagkdee....AlkalkelkerfpsdaerlealaYv 163
                 +  +++  a++   lA A+  e+++ +A   ++++l  +P+n+d+ +Gl ++++ a++ ++       al +l+ + ++ a+r+ a+a++
  MMETSP1137-20121227|1062_1 487 CvAIKPEHAKGHFRLALALQAEERFGEACHAFNRVLTLEPRNKDATSGLRMAEVQAERXAQdgssMTHALPQLRRAAGPRASRFDASAWL 576
                 5555555566666789999999**************************999888777655411113455666666677777777777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (635 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       144  (0.0351048); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.52u 0.18s 00:00:00.70 Elapsed: 00:00:01.56
# Mc/sec: 537.26
//
Query:       MMETSP1137-20121227|1064_1  [L=487]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (487 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       139  (0.0338859); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.14s 00:00:00.48 Elapsed: 00:00:00.35
# Mc/sec: 1836.53
//
Query:       MMETSP1137-20121227|1065_1  [L=527]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (527 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       103  (0.0251097); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.15s 00:00:00.49 Elapsed: 00:00:00.42
# Mc/sec: 1656.15
//
Query:       MMETSP1137-20121227|1067_1  [L=541]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (541 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       107  (0.0260848); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.16s 00:00:00.54 Elapsed: 00:00:00.95
# Mc/sec: 751.64
//
Query:       MMETSP1137-20121227|1068_1  [L=512]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (512 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       164  (0.0399805); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.54u 0.14s 00:00:00.68 Elapsed: 00:00:00.65
# Mc/sec: 1039.67
//
Query:       MMETSP1137-20121227|1069_1  [L=219]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (219 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        52  (0.0126767); expected 82.0 (0.02)
Passed bias filter:                       34  (0.00828864); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.11s 00:00:00.31 Elapsed: 00:00:00.32
# Mc/sec: 903.30
//
Query:       MMETSP1137-20121227|1070_1  [L=267]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (267 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       151  (0.0368113); expected 82.0 (0.02)
Passed bias filter:                       96  (0.0234032); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.14s 00:00:00.39 Elapsed: 00:00:00.88
# Mc/sec: 400.47
//
Query:       MMETSP1137-20121227|1071_1  [L=221]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (221 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        78  (0.0190151); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.14s 00:00:00.33 Elapsed: 00:00:00.38
# Mc/sec: 767.62
//
Query:       MMETSP1137-20121227|1072_1  [L=279]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (279 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       113  (0.0275475); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.13s 00:00:00.36 Elapsed: 00:00:00.36
# Mc/sec: 1022.92
//
Query:       MMETSP1137-20121227|1073_1  [L=356]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (356 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        83  (0.020234); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.16s 00:00:00.42 Elapsed: 00:00:00.46
# Mc/sec: 1021.48
//
Query:       MMETSP1137-20121227|1075_1  [L=503]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (503 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       125  (0.0304729); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.16s 00:00:00.49 Elapsed: 00:00:00.51
# Mc/sec: 1301.77
//
Query:       MMETSP1137-20121227|1077_1  [L=169]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (169 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        81  (0.0197465); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.15s 00:00:00.32 Elapsed: 00:00:00.31
# Mc/sec: 719.55
//
Query:       MMETSP1137-20121227|1078_1  [L=56]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        17  (0.00414432); expected 82.0 (0.02)
Passed bias filter:                       15  (0.00365675); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.17s 00:00:00.28 Elapsed: 00:00:00.30
# Mc/sec: 246.38
//
Query:       MMETSP1137-20121227|1079_1  [L=119]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (119 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        57  (0.0138957); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.15s 00:00:00.30 Elapsed: 00:00:00.31
# Mc/sec: 506.67
//
Query:       MMETSP1137-20121227|1080_1  [L=303]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (303 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        88  (0.0214529); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.12s 00:00:00.36 Elapsed: 00:00:00.51
# Mc/sec: 784.17
//
Query:       MMETSP1137-20121227|1081_1  [L=89]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (89 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        50  (0.0121892); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.14s 00:00:00.27 Elapsed: 00:00:00.26
# Mc/sec: 451.81
//
Query:       MMETSP1137-20121227|1082_1  [L=265]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (265 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        76  (0.0185275); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.16s 00:00:00.38 Elapsed: 00:00:00.30
# Mc/sec: 1165.90
//
Query:       MMETSP1137-20121227|1083_1  [L=498]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.2e-11   42.7   7.7    1.2e-11   42.7   5.4    2.7  3  TIGR00880 2_A_01_02: multidrug resistance protein
    3.6e-10   37.6   6.0    3.6e-10   37.6   4.2    1.4  1  TIGR00710 efflux_Bcr_CflA: drug resistance transporter, Bcr/CflA subfamily
    0.00013   18.7   0.2     0.0003   17.5   0.1    1.5  1  TIGR00898 2A0119: cation transport protein


Domain annotation for each model (and alignments):
>> TIGR00880  2_A_01_02: multidrug resistance protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.1       1.9   2.6e+03      60      81 ..      72      93 ..      69     110 .. 0.66
   2 !   42.7   5.4   8.9e-15   1.2e-11       5     141 .]     115     252 ..     111     252 .. 0.90
   3 ?   -1.8   2.0      0.49   6.7e+02     101     137 ..     422     462 ..     345     465 .. 0.66

  Alignments for each domain:
  == domain 1    score: -3.7 bits;  conditional E-value: 1.9
   TIGR00880 60 lqGfgaaaalvagaaliadiik 81
                l+G+ ++ + v+ +al a + +
  MMETSP1137-20121227|1083_1 72 LAGLQSSCFGVISQALPAALLA 93
                5666666666666666655544 PP

  == domain 2    score: 42.7 bits;  conditional E-value: 8.9e-15
   TIGR00880   5 agyAlgqlvvsplsglltdrvGrkpvllvglfifvlsqllfalssnitvliiarilqGfgaaaalvagaaliadiikee..ersvalgllsagialgpilGpllGavlaqalgwralflilallallafilllfllpeT 141
                  ++A+g l++s  +g l+d +Grkp+l+++ + +v++ ++++l  ++ vl+ ar++ ++   + + + +a+iad + ++  +++v  + + a++ lg +l+ ++G++l+++   r  + + ++l + +++l++  l eT
  MMETSP1137-20121227|1083_1 115 SASAAGELLLSGTFGKLSDAYGRKPLLILSPAACVFARFVVTLNPTVPVLLGARFVTSLLVPMYWLSFQATIADCFGRNttKLAVLGSRVQAAMGLGYSLSSIVGGLLTAV-DVRLAYAASCALGASVMMLVATRLRET 252
                 5799************************************************************************988545666668899*****************998.667999999999888888888777776 PP

  == domain 3    score: -1.8 bits;  conditional E-value: 0.49
   TIGR00880 101 ilGpllGavla....qalgwralflilallallafilllfl 137
                 +l+p l a+            a+f++ a++ +la++l+l +
  MMETSP1137-20121227|1083_1 422 VLSPTLYAWSSplaaGXGVVAAPFYFSAVVLILAAALSLTI 462
                 55555555544333333345689999999999998887765 PP

>> TIGR00710  efflux_Bcr_CflA: drug resistance transporter, Bcr/CflA subfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.6   4.2   2.6e-13   3.6e-10      54     190 ..     118     259 ..     100     375 .. 0.84

  Alignments for each domain:
  == domain 1    score: 37.6 bits;  conditional E-value: 2.6e-13
   TIGR00710  54 avgqLl....lGplsDsyGRkpvlLlgllvfalsslvlalsenietllvlRflqafgasaalVisqalvrDiya..keelskvysilmlllalaPllapliGgyvlvflsWhaiFavlsligillvaliflllpeTkakekri 190
                 a+g Ll    +G+lsD+yGRkp l+l   + + +  v++l +++ +ll +Rf+ ++ +     + qa++ D++     +l ++ s +   + l   l++++Gg++   +  +  +a   + g  +++l++ +l+eT+   +r+
  MMETSP1137-20121227|1083_1 118 AAGELLlsgtFGKLSDAYGRKPLLILSPAACVFARFVVTLNPTVPVLLGARFVTSLLVPMYWLSFQATIADCFGrnTTKLAVLGSRVQAAMGLGYSLSSIVGGLLTA-VDVRLAYAASCALGASVMMLVATRLRETLGLSRRK 259
                 55555433338**************************************************************95456899999*******************9865.56677777777777777777788888887777665 PP

>> TIGR00898  2A0119: cation transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.1   2.2e-07    0.0003     132     189 ..     114     171 ..     106     180 .. 0.89

  Alignments for each domain:
  == domain 1    score: 17.5 bits;  conditional E-value: 2.2e-07
   TIGR00898 132 qsvvfvGvLlGslvlGqlsDrfGRkkvLllstlvtavsgvltafspnytvflvlrlLv 189
                  s    G Ll s ++G+lsD +GRk +L+ls        ++  + p+  v+l  r+++
  MMETSP1137-20121227|1083_1 114 ASASAAGELLLSGTFGKLSDAYGRKPLLILSPAACVFARFVVTLNPTVPVLLGARFVT 171
                 5677889999999*******************99999999999999999999888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (498 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       162  (0.0394929); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.38u 0.14s 00:00:00.52 Elapsed: 00:00:00.65
# Mc/sec: 1011.24
//
Query:       MMETSP1137-20121227|1085_1  [L=304]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (304 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       105  (0.0255973); expected 82.0 (0.02)
Passed bias filter:                       98  (0.0238908); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.15s 00:00:00.41 Elapsed: 00:00:00.31
# Mc/sec: 1294.34
//
Query:       MMETSP1137-20121227|1086_1  [L=315]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (315 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        95  (0.0231594); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.17s 00:00:00.44 Elapsed: 00:00:00.35
# Mc/sec: 1187.90
//
Query:       MMETSP1137-20121227|1087_1  [L=181]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (181 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        65  (0.0158459); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.18s 00:00:00.36 Elapsed: 00:00:00.28
# Mc/sec: 823.79
//
Query:       MMETSP1137-20121227|1088_1  [L=325]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.1e-06   24.4   0.0       0.01   12.9   0.0    2.2  2  TIGR01728 SsuA_fam: ABC transporter, substrate-binding protein, aliphatic sulfonates family


Domain annotation for each model (and alignments):
>> TIGR01728  SsuA_fam: ABC transporter, substrate-binding protein, aliphatic sulfonates family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.9   0.0   2.4e-06      0.01       1      79 [.      14      91 ..      14     110 .. 0.78
   2 !    9.4   0.0   2.8e-05      0.12     182     241 ..     210     272 ..     196     279 .. 0.81

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 2.4e-06
   TIGR01728  1 vrigyqknlghsalllakekgllekelkkikvewveFda.gpaeleaLaagslDigyiGpgpalnayaaGadikavglas 79
                vr g +++l  +++ la+  g++++++  + ++w+ + + g+ +l+aL +++lDi+      a+      +d+ +++ +s
  MMETSP1137-20121227|1088_1 14 VRAGGTPDLFNAPWQLAMVXGSFAQAG--LLLDWSDYRSdGNLVLQALRTDKLDIAVLSTECAMLELQRNNDFDLLAPVS 91
                677888888899***************..*******9865999************9876655544444445666655555 PP

  == domain 2    score: 9.4 bits;  conditional E-value: 2.8e-05
   TIGR01728 182 ke...vpsllvvreefieehpeqVekllkvlvkarkfaeenpeesaeilakelkvsqeeveee 241
                 +e   +  ++v+ ++++ e  eqV ++lk+l k+++ ++++ e ++ +l+   +++  +v+ +
  MMETSP1137-20121227|1088_1 210 EEygwPQFVIVAAKRLVDEGEEQVIAMLKALQKSAAQLKKDKELAVSTLSLMYGIEAGQVSSW 272
                 44443355788999*****************************99999988888777777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (325 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       129  (0.0314481); expected 82.0 (0.02)
Passed bias filter:                      122  (0.0297416); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.27u 0.16s 00:00:00.43 Elapsed: 00:00:00.37
# Mc/sec: 1159.36
//
Query:       MMETSP1137-20121227|1090_1  [L=686]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (686 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        75  (0.0182838); expected 82.0 (0.02)
Passed bias filter:                       38  (0.00926377); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.16s 00:00:00.57 Elapsed: 00:00:00.41
# Mc/sec: 2208.40
//
Query:       MMETSP1137-20121227|1091_1  [L=385]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        3.4    4.5  18.3        4.6    4.0  12.7    1.1  1  TIGR01628 PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family
        5.5    3.9  47.1        7.6    3.5  32.7    1.2  1  TIGR02794 tolA_full: protein TolA


Domain annotation for each model (and alignments):
>> TIGR01628  PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0  12.7    0.0023       4.6     400     499 ..      43     144 ..      18     162 .. 0.66

  Alignments for each domain:
  == domain 1    score: 4.0 bits;  conditional E-value: 0.0023
   TIGR01628 400 rhqaaqqqavvtqavkqqlasqplnfkinqmmlstqnpskpeapnalaqlaqqrlqaqgrrnlnnr.nrnvlgnmnkkqqnaaskanqanvkaqpq..aqskn 499
                 r++  qqq +  q ++qq+++q+l+   +q + +++   + e+ + la  aqqr+q+q+r+ ++ + ++  l++++ k+q+a + ++ ++ +a+ +   + +n
  MMETSP1137-20121227|1091_1  43 RQEEYQQQXLLRQMQAQQAQQQQLKQA-QQYQAMKEAALRAEREQLLAAAAQQRQQQQQRQYAQGGgAKPALSKKELKRQQAEQAKKIKEAEAKLKkdLERRN 144
                 345567777778888888888888776.555555555556777899999999998888787777777777787776666665555544444443322244443 PP

>> TIGR02794  tolA_full: protein TolA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5  32.7    0.0037       7.6      95     200 ..      42     153 ..      20     162 .. 0.51

  Alignments for each domain:
  == domain 1    score: 3.5 bits;  conditional E-value: 0.0037
   TIGR02794  95 arqkelekqraaaekaakkaeeaakekeekkkqaeeakakqaaEakakaeaeaKa..ekkakee........AakkaEeeakakaaaeakkkaEaeeakkkaeaeak.KakaeaeaK 200
                 +rq+e ++q + ++ +a++a++++ +++++ ++  ea+ +++ E+  +a+a++++  ++++           A  k+E ++  ++a++akk +E +eak k++ e++ Ka +  + +
  MMETSP1137-20121227|1091_1  42 RRQEEYQQQXLLRQMQAQQAQQQQLKQAQQYQAMKEAALRAEREQLLAAAAQQRQqqQQRQ--YaqgggakpALSKKELKR--QQAEQAKKIKE-AEAKLKKDLERRnKAIKQQRGR 153
                 2334444444455555555556666556666666677777777774444444433222222..123554333333333333..33344444444.2455555555555555544444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (385 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       598  (0.145783); expected 82.0 (0.02)
Passed bias filter:                      206  (0.0502194); expected 82.0 (0.02)
Passed Vit filter:                        35  (0.00853242); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.20s 00:00:00.63 Elapsed: 00:00:00.48
# Mc/sec: 1058.66
//
Query:       MMETSP1137-20121227|1092_1  [L=322]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.4e-85  282.8   0.0      5e-85  282.6   0.0    1.0  1  TIGR00674 dapA: dihydrodipicolinate synthase
    2.3e-66  221.4   0.0    2.6e-66  221.2   0.0    1.0  1  TIGR02313 HpaI-NOT-DapA: 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase
    5.4e-36  122.2   0.0    6.8e-36  121.9   0.0    1.0  1  TIGR00683 nanA: N-acetylneuraminate lyase
    3.7e-25   86.5   0.0    4.7e-25   86.1   0.0    1.1  1  TIGR03249 KdgD: 5-dehydro-4-deoxyglucarate dehydratase


Domain annotation for each model (and alignments):
>> TIGR00674  dapA: dihydrodipicolinate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  282.6   0.0   4.9e-88     5e-85       2     279 ..      35     311 ..      34     318 .. 0.97

  Alignments for each domain:
  == domain 1    score: 282.6 bits;  conditional E-value: 4.9e-88
   TIGR00674   2 vltAliTPfkedgsvdfaalekliesqiekgvdaivvvGtTGEsatLsleEkkkvievavelvknrvpviaGtgsnateeaieltkeaeklgvdgvlvvtPyYnkPtqeGlykhfkaiaeevelPiilYnvPsRtgvslepetvkrLaeeveivaiKeasgdlervseikaeakedfkvlsGdDaltleilalGakGviSVasnvapkelkemvkaalegdteeareihqkllklfkalfietNPipvKtalallgliekdelRlPLtelseekkekl 279
                 +l+AliTP+ + g++d ++l  l++ ++++g+++iv++GtTGE+ t+ + E+++v+e+  e   +++p+++Gtg+   +++i++ ++a + g+d++lvvtPyY+kP q  l+ +f  +a+++ lP++lYnvP+Rt+v+l+p+tv++L+e+++i++iKea+g+lerv  +++  + df ++sG+D+ + e+++lG+ G iSV+snvap + + + +aal+gd + a  +++ l++l++ lf+++NPipvK+a+a +g + +  +RlPL++l+e  +e l
  MMETSP1137-20121227|1092_1  35 SLVALITPMSQSGDIDEDKLRGLLRWHLQSGTNGIVALGTTGEASTMDMGERAAVLEICKEEIVGKIPLMVGTGTIDPRKVIQMNEQAIEYGADSCLVVTPYYTKPPQGALLSFFRHVADATPLPMLLYNVPGRTAVDLQPQTVAALSEHPRIFGIKEATGQLERVPLLRELCGPDFMLFSGEDSNAYEFTLLGGDGTISVTSNVAPVQQRLVFEAALRGDKAAATALNEPLKTLHQRLFLQANPIPVKWAVAHMGRADH-GIRLPLCQLEEPFHEPL 311
                 799*****************************************************************************************************************************************************************************************************************************************************************.********998766555 PP

>> TIGR02313  HpaI-NOT-DapA: 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  221.2   0.0   2.5e-69   2.6e-66       3     290 ..      34     319 ..      32     322 .] 0.97

  Alignments for each domain:
  == domain 1    score: 221.2 bits;  conditional E-value: 2.5e-69
   TIGR02313   3 gsiaplitpfkvngdldekklrelvervvengshavsvtgtsgepssltleerkrvievvldtvagrvpvipgtgalrleetleltkkakeagadaamvivpyyvkpnqealydyfkevadavpdiplliynipgraaveievktvarlvkdfpnivglkesskdleylsrllleagrdfllfsglelltlpmlalgavgsiaatanvepkkvaelhekaeegdikrarelhfellelnevlfkdtnpiplkavlslmgllekvlrrplgltsdeleeelrdtlvkyg 290
                 gs+  litp+ ++gd+de+klr l+   +++g+ ++   gt+ge s++ + er  v+e   +++ g++p++ gtg++   + +++  +a e gad+ +v+ pyy+kp q al  +f++vada   +p+l+yn+pgr+av+++++tva l  + p i g+ke++ +le +  l   +g df+lfsg ++ ++ +  lg+ g+i+ t+nv p +  ++ e+a+ gd   a  l   l  l + lf ++npip+k +++ mg  ++ +r pl    +  +e l + +   g
  MMETSP1137-20121227|1092_1  34 GSLVALITPMSQSGDIDEDKLRGLLRWHLQSGTNGIVALGTTGEASTMDMGERAAVLEICKEEIVGKIPLMVGTGTIDPRKVIQMNEQAIEYGADSCLVVTPYYTKPPQGALLSFFRHVADAT-PLPMLLYNVPGRTAVDLQPQTVAALS-EHPRIFGIKEATGQLERVPLLRELCGPDFMLFSGEDSNAYEFTLLGGDGTISVTSNVAPVQQRLVFEAALRGDKAAATALNEPLKTLHQRLFLQANPIPVKWAVAHMGRADHGIRLPLCQLEEPFHEPLLEAMREAG 319
                 8999***********************************************************************************************************************.6***********************97.68*****************99999**********************************************************************************************9988888887777666655 PP

>> TIGR00683  nanA: N-acetylneuraminate lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  121.9   0.0   6.6e-39   6.8e-36       3     240 ..      34     271 ..      33     314 .. 0.92

  Alignments for each domain:
  == domain 1    score: 121.9 bits;  conditional E-value: 6.6e-39
   TIGR00683   3 GvlaallvsfdedqaldkkslrrlvrfnidkgvdGlyvGGstGeafvlsleekkevleivkeeakdkikliaqvGsvslkeavelaksakelGydalsavtpfyykfsfeeikdyydaiideadglnmvvysipalsGvkltleqinelvklpkvlalkftaGdlyllerlkke.ypdlllyaGydeillsalllGvdGaiGstynvnGvrarqivkllkeGdlaealklqtvtndlie 240
                 G l al++++ + + +d+  lr l+r+ ++ g +G+   G+tGea  + + e+  vlei kee  +ki l+   G+++ ++  ++ ++a e+G d+   vtp+y k        +++ + d +  l+m++y++p  + v+l  + ++ l + p++ ++k ++G+l ++  l+    pd++l++G d       llG dG+i  t nv  v+ r ++++   Gd a a  l++    l +
  MMETSP1137-20121227|1092_1  34 GSLVALITPMSQSGDIDEDKLRGLLRWHLQSGTNGIVALGTTGEASTMDMGERAAVLEICKEEIVGKIPLMVGTGTIDPRKVIQMNEQAIEYGADSCLVVTPYYTKPPQGALLSFFRHVADATP-LPMLLYNVPGRTAVDLQPQTVAALSEHPRIFGIKEATGQLERVPLLRELcGPDFMLFSGEDSNAYEFTLLGGDGTISVTSNVAPVQQRLVFEAALRGDKAAATALNEPLKTLHQ 271
                 5688******************************************************************************************************************999888.*******************************************99998526************************************************999998876666555 PP

>> TIGR03249  KdgD: 5-dehydro-4-deoxyglucarate dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.1   0.0   4.6e-28   4.7e-25       8     285 ..      31     305 ..      25     318 .. 0.88

  Alignments for each domain:
  == domain 1    score: 86.1 bits;  conditional E-value: 4.6e-28
   TIGR03249   8 igsGllsfPvtpfdadgsldeaalrenieflldedlealfvagGtGeffsltkaeveqvvevaveaakgkvPvlagvGg.nlsvaieiaraaekkGadGllllPpylieaeqeGlaayvkaviesvdlgvivyq...rdnavleadtlerlaerlpnlvGfkdGiGdiekvieitqklGdrllylgGlPtaevtalaylalGvtsyssaifnfiPkiarkfyealrkgdeatvkeilkevilPiveirnrkkGyavsl.ikaGlevvGrdvgpvraPlvdlek 285
                 ++ G l   +tp+ + g++de++lr  +++ l+++ +++ + g tGe  +++  e  +v+e+  e+  gk+P++ g+G  + ++ i++ ++a + Gad  l++ py ++  q  l ++ + v++++ l +++y+   r  + l+ +t++ l e  p++ G+k+  G++e+v  +++  G  ++  +G    +  a  ++ lG +   s  +n  P   r  +ea  +gd+a+ +++ +    P+ ++ +r    a  + +k  +  +Gr  + +r Pl +le+
  MMETSP1137-20121227|1092_1  31 MQPGSLVALITPMSQSGDIDEDKLRGLLRWHLQSGTNGIVALGTTGEASTMDMGERAAVLEICKEEIVGKIPLMVGTGTiDPRKVIQMNEQAIEYGADSCLVVTPYYTKPPQGALLSFFRHVADATPLPMLLYNvpgRTAVDLQPQTVAALSE-HPRIFGIKEATGQLERVPLLRELCGPDFMLFSG---EDSNAYEFTLLGGDGTISVTSNVAPVQQRLVFEAALRGDKAAATALNE----PLKTLHQRLFLQANPIpVKWAVAHMGRADHGIRLPLCQLEE 305
                 5567777789********************************************************************7367899************************************************977799999**********9.9****************************9999...5667889999*****************************998766544....55666655555555554666677777777777777777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (322 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        89  (0.0216967); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.28u 0.17s 00:00:00.45 Elapsed: 00:00:00.31
# Mc/sec: 1370.98
//
Query:       MMETSP1137-20121227|1093_1  [L=238]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (238 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       104  (0.0253535); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.17s 00:00:00.37 Elapsed: 00:00:00.32
# Mc/sec: 981.67
//
Query:       MMETSP1137-20121227|1094_1  [L=229]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (229 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        40  (0.00975134); expected 82.0 (0.02)
Passed bias filter:                       29  (0.00706972); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.22s 00:00:00.38 Elapsed: 00:00:00.45
# Mc/sec: 671.68
//
Query:       MMETSP1137-20121227|1095_1  [L=345]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (345 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        68  (0.0165773); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.19s 00:00:00.41 Elapsed: 00:00:00.26
# Mc/sec: 1751.39
//
Query:       MMETSP1137-20121227|1097_1  [L=256]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.6e-10   37.5   0.0    3.8e-10   37.0   0.0    1.2  1  TIGR01327 PGDH: phosphoglycerate dehydrogenase
  ------ inclusion threshold ------
          6    4.1  12.3       0.02   12.2   1.2    1.9  2  TIGR01097 PhnE: phosphonate ABC transporter, permease protein PhnE


Domain annotation for each model (and alignments):
>> TIGR01327  PGDH: phosphoglycerate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.0   0.0   1.8e-13   3.8e-10      78     208 ..     128     256 .]     126     256 .] 0.91

  Alignments for each domain:
  == domain 1    score: 37.0 bits;  conditional E-value: 1.8e-13
   TIGR01327  78 ieaatkkGilvvNaPegntisaaElalalllalaRkipqadksvkekkWerkkflGtElygktlGviGlGriGsevakrakalgmkvlayDPyise.ekaeklgvellkdldellaeaDvitvHvPltketk 208
                 i aa + Gi +   P       a + +a++l+ +R + +  ++  +k+W     +  + +g  +Gv+G+G iG+eva+ a algm+ +++     +   +e++     + ld ll e+D++ v vP t++t+
  MMETSP1137-20121227|1097_1 128 IRAAHAAGIKMTYCPGVYATPIAQYVIAHVLSCTRMLREHAEQQASKTWAP--LMQRDPRGAVVGVVGAGGIGNEVARMATALGMRSIGWRRRAGSfGSFEDIFTG-EEGLDALLMESDFVVVAVPNTPQTR 256
                 568889999999999999999*******************9********97..999**********************************8766442677888766.788********************96 PP

>> TIGR01097  PhnE: phosphonate ABC transporter, permease protein PhnE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   2.2      0.67   1.4e+03      68      83 ..       8      23 ..       2      44 .. 0.48
   2 ?   12.2   1.2   9.7e-06      0.02     200     218 ..     187     205 ..     184     215 .. 0.81

  Alignments for each domain:
  == domain 1    score: -3.6 bits;  conditional E-value: 0.67
   TIGR01097 68 allgtllaavlalpla 83
                a+++t+  a++a +la
  MMETSP1137-20121227|1097_1  8 AAVATAAVALVAATLA 23
                2222222222222222 PP

  == domain 2    score: 12.2 bits;  conditional E-value: 9.7e-06
   TIGR01097 200 tvlGlvGAGGIGleLaeai 218
                 +v+G+vGAGGIG e+a   
  MMETSP1137-20121227|1097_1 187 AVVGVVGAGGIGNEVARMA 205
                 89**********9987655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (256 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       281  (0.0685032); expected 82.0 (0.02)
Passed bias filter:                      213  (0.0519259); expected 82.0 (0.02)
Passed Vit filter:                        29  (0.00706972); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.26u 0.22s 00:00:00.48 Elapsed: 00:00:00.41
# Mc/sec: 824.13
//
Query:       MMETSP1137-20121227|1099_1  [L=190]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (190 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        66  (0.0160897); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.16s 00:00:00.34 Elapsed: 00:00:00.35
# Mc/sec: 716.51
//
Query:       MMETSP1137-20121227|1099_2  [L=146]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (146 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       133  (0.0324232); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.16s 00:00:00.33 Elapsed: 00:00:00.33
# Mc/sec: 583.95
//
Query:       MMETSP1137-20121227|1100_1  [L=248]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0001   19.6   0.0    0.00014   19.0   0.0    1.2  1  TIGR00310 ZPR1_znf: ZPR1 zinc finger domain
     0.0017   15.7   0.0     0.0026   15.1   0.0    1.3  1  TIGR00340 zpr1_rel: zinc finger protein ZPR1 homolog


Domain annotation for each model (and alignments):
>> TIGR00310  ZPR1_znf: ZPR1 zinc finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.0     7e-08   0.00014      52     164 ..     113     224 ..      92     240 .. 0.87

  Alignments for each domain:
  == domain 1    score: 19.0 bits;  conditional E-value: 7e-08
   TIGR00310  52 kryilkidaeadLnkrvvksesatiriPelgleiepGpasegfitnleGvlerveevlktalrlqse.deekkkkaeellerlkevieGkekltvileDPlgqslivseealke 164
                   ++l++++ adL +   k+  a++riP l+ ei  G + + +i ++   +     +l + +r +++ d + ++ ++e +++l+ + + +  + v++ DP g s+ + +e  ++
  MMETSP1137-20121227|1100_1 113 CTLTLHVKTRADLWRVFFKAPDASVRIPHLEFEI--GCTHKRHIDTVYNHITNAXLELSSHIRGRTDlDSAXVEGVTETIDQLNALLDIETPFDVVVDDPTGFSIFKPDEDVEK 224
                 46899999********************877766..889************************98543788999999***************************9887665544 PP

>> TIGR00340  zpr1_rel: zinc finger protein ZPR1 homolog
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   1.3e-06    0.0026      49     159 ..     112     222 ..     101     226 .. 0.83

  Alignments for each domain:
  == domain 1    score: 15.1 bits;  conditional E-value: 1.3e-06
   TIGR00340  49 PkryeikieneedLktrvvrsksatiripelgikiepgpasegfisnieGvlerveeklktaldleeed..ekvkkveeilkkieevieGkkkltliieDefGksliesekal 159
                 P  +++++++  dL    +++  a +rip l+ +i  +   + +i ++   +  +  +l+  ++ +++     v+ v e +++++   + ++++ +++ D+ G s+ + ++ +
  MMETSP1137-20121227|1100_1 112 PCTLTLHVKTRADLWRVFFKAPDASVRIPHLEFEIGCT--HKRHIDTVYNHITNAXLELSSHIRGRTDLdsAXVEGVTETIDQLNALLDIETPFDVVVDDPTGFSIFKPDEDV 222
                 778899999999*******************9999665..56789999888877777777666554443237799999999999999******************99987755 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (248 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        84  (0.0204778); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.22u 0.17s 00:00:00.39 Elapsed: 00:00:00.88
# Mc/sec: 371.97
//
Query:       MMETSP1137-20121227|1101_1  [L=370]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (370 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        37  (0.00901999); expected 82.0 (0.02)
Passed bias filter:                       33  (0.00804486); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.16s 00:00:00.41 Elapsed: 00:00:00.74
# Mc/sec: 659.95
//
Query:       MMETSP1137-20121227|1102_1  [L=731]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (731 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.14s 00:00:00.59 Elapsed: 00:00:00.61
# Mc/sec: 1581.71
//
Query:       MMETSP1137-20121227|1103_1  [L=286]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.038   11.0   0.0      0.052   10.6   0.0    1.1  1  TIGR00203 cydB: cytochrome d ubiquinol oxidase, subunit II


Domain annotation for each model (and alignments):
>> TIGR00203  cydB: cytochrome d ubiquinol oxidase, subunit II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   1.3e-05     0.052     139     223 ..     193     275 ..     186     284 .. 0.81

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 1.3e-05
   TIGR00203 139 gnllrGvPfdvdellrveytgsffellnpfallaGvvslglvitqGavflqlktvgelrlrarkvaqkaalvvlvafllagvlvl 223
                 ++ll+G  f+ + + +++  g     l+ + l +G + l + i +G    +++t ++++ ++ ++ +++  v +++f++a+ l +
  MMETSP1137-20121227|1103_1 193 TELLKGKEFQYTGE-ELSLRGRNGAKLKKYDLDSGPLKLNVSI-NGIGIATMRTDEAIHTKTVQMVKHVDPVQMLCFAIACELKV 275
                 56677777766543.4556666777888899999999888766.699999*****************************988755 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (286 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        75  (0.0182838); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.24u 0.15s 00:00:00.39 Elapsed: 00:00:00.32
# Mc/sec: 1179.65
//
Query:       MMETSP1137-20121227|1104_1  [L=199]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (199 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.16s 00:00:00.36 Elapsed: 00:00:00.47
# Mc/sec: 558.85
//
Query:       MMETSP1137-20121227|1105_1  [L=247]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.8e-06   24.6   0.0    4.8e-06   24.6   0.0    2.3  3  TIGR00307 S8e: ribosomal protein S8.e


Domain annotation for each model (and alignments):
>> TIGR00307  S8e: ribosomal protein S8.e
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.7      0.13   5.5e+02      12      24 ..      29      41 ..       8      70 .. 0.54
   2 ?   -2.4   0.1      0.25     1e+03      40      40 ..     118     118 ..      82     144 .. 0.55
   3 !   24.6   0.0   1.2e-09   4.8e-06      56     125 ..     163     246 ..     159     247 .] 0.93

  Alignments for each domain:
  == domain 1    score: -1.5 bits;  conditional E-value: 0.13
   TIGR00307 12 atGakrrkarkkr 24
                  G ++++  kkr
  MMETSP1137-20121227|1105_1 29 VRGLRAKMYNKKR 41
                2222222222332 PP

  == domain 2    score: -2.4 bits;  conditional E-value: 0.25
   TIGR00307  40 k 40 
                  
  MMETSP1137-20121227|1105_1 118 D 118
                 2 PP

  == domain 3    score: 24.6 bits;  conditional E-value: 1.2e-09
   TIGR00307  56 llrietanvsdaeeGkvkkvriagvvenpannelvrrnvltkaaiveidig..............karvtsrPgqdGvvdgvll 125
                 +lr ++a v+++e   + +  ++gv +np    +    v+tk++i+e  +               +a+vt+ P  dG +++vll
  MMETSP1137-20121227|1105_1 163 ALRFKKAHVTHPELKATFQLDLIGVKKNPQSPLYTSLGVITKGTIIEXLLDlglvtpsgkvvwgkYAQVTNNPENDGCINAVLL 246
                 678899999999999999*****************************765556*****************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (247 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       306  (0.0745978); expected 82.0 (0.02)
Passed bias filter:                      173  (0.0421745); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.25u 0.17s 00:00:00.42 Elapsed: 00:00:00.70
# Mc/sec: 465.73
//
Query:       MMETSP1137-20121227|1106_1  [L=63]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (63 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        47  (0.0114578); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.18s 00:00:00.31 Elapsed: 00:00:00.25
# Mc/sec: 332.61
//
Query:       MMETSP1137-20121227|1107_1  [L=339]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (339 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        70  (0.0170648); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.13s 00:00:00.37 Elapsed: 00:00:00.38
# Mc/sec: 1177.48
//
Query:       MMETSP1137-20121227|1108_1  [L=363]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.1e-93  311.6   0.0    7.3e-93  308.9   0.0    1.8  1  TIGR01036 pyrD_sub2: dihydroorotate oxidase
    5.5e-22   76.0   0.0    1.3e-21   74.8   0.0    1.6  1  TIGR01037 pyrD_sub1_fam: dihydroorotate dehydrogenase family protein
  ------ inclusion threshold ------
      0.039   11.9   0.1      0.094   10.7   0.0    1.6  1  TIGR01954 nusA_Cterm_rpt: transcription termination factor NusA, C-terminal duplication


Domain annotation for each model (and alignments):
>> TIGR01036  pyrD_sub2: dihydroorotate oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  308.9   0.0   5.4e-96   7.3e-93       4     353 ..      16     344 ..      13     346 .. 0.93

  Alignments for each domain:
  == domain 1    score: 308.9 bits;  conditional E-value: 5.4e-96
   TIGR01036   4 vrkllflldaekahelvvkvlrlvaasaflallrsklgakdklevevlGlkfknPlGlaaGfDkdgealdalgalGfGyleiGtvtpkaqeGnekPrlfrliedealinrmGfnnhGvsllverlkr........aryklpiGinlGknkkteaedakeDYkaslrkvlnladYlvvnvssPntpgLrdLqakealrelltavkeetddlrrvkrvpvlvkiaPDLseedlediadslveldidGviatnttvsrdl.vtgaknaeetGGlsGkpLqkksteiirrlakelkgrlpligvGGidsakealekikaGasLlqiYsaliykGpklvkeivkelekllkedgfgsvkeaiga 353
                 v+ +l lld+e+ah+++vk  +l        l+ +k +++ +l +++ G + +nP+GlaaGfDkd+ea+ a+      +l +G+           Pr fr     ++inr+Gfn+ G ++ ++rl++          +   +GinlGknk  +++d ++DY        ++adYlvvnvssPntpgLrdLq+++ l +ll +v++e d l + + +p+l+k+aPDL++++ +diad+  e++idG+i+ ntt+ r+  + +a+ + e GGlsG pL + st ++r+l+++++g+++ligvGG++s+k+a+eki+ Gas +q+Ysal+y+G +lv  i+kel+ ll e+gf sv ea+g+
  MMETSP1137-20121227|1108_1  16 VKPMLMLLDPETAHRVAVKAASLK------ILPAQKREDDPVLRTTLWGRTVRNPIGLAAGFDKDAEAMTAFSGSASVWLRLGA----------SPR-FRSL--ASVINRYGFNSSGHEAAENRLAKratrvpavGSETKLLGINLGKNK--TSTDPTNDYV-------PVADYLVVNVSSPNTPGLRDLQKRKVLLDLLLSVRNEVDALPEPR-PPLLLKVAPDLNDSECQDIADVSREAKIDGIIVSNTTIARPEtLRSAH-KAEAGGLSGAPLFEPSTAVLRNLYQRTEGKMTLIGVGGVSSGKDAYEKIRNGASAVQLYSALVYEGTPLVSRIKKELASLLAENGFSSVDEAVGS 344
                 78899*************987776......46777777777*******************************988777777774..........677.6655..69*******************9989999887677788*********..8999*****5.......89*************************************998876.****************************************98466666.55********************************************************************************************8 PP

>> TIGR01037  pyrD_sub1_fam: dihydroorotate dehydrogenase family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.8   0.0   9.2e-25   1.3e-21      60     298 ..      99     344 ..      52     346 .. 0.81

  Alignments for each domain:
  == domain 1    score: 74.8 bits;  conditional E-value: 9.2e-25
   TIGR01037  60 vkaGllnaiGLqnPgveefleelkkvreevdtk.liasvyGeseeefaevaeklekadkyvdaleLnvsCPhvkgaGieiGqdpelsaevvkavkekvdk......PvlakLsPnvtd..ivelakaveeaGaDgltlintlkgmkidikakkPiLanktGGlsGpaikpiavrvvydlykkld..iPiiGvGGitsaeDalefllaGasavqvGtavyyeg.kvfkkiieeliaflkeeglksieeliGl 298
                   a ++n  G+++ g e+  + l k  + v++    + + G +  +  + ++  ++  +++d l +nvs P+    G++  q  +++ ++   v++ vd       P+l k++P+++d    ++a +  ea  Dg+ ++nt ++    ++++      ++GGlsG  +   +  v+ +ly++ +  + +iGvGG+ s +Da e +  Gasavq+ +a  yeg  ++ +i++el ++l e+g++s++e +G 
  MMETSP1137-20121227|1108_1  99 SLASVINRYGFNSSGHEAAENRLAKRATRVPAVgSETKLLGINLGKNKTSTDPTNDYVPVADYLVVNVSSPNT--PGLRDLQKRKVLLDLLLSVRNEVDAlpeprpPLLLKVAPDLNDseCQDIADVSREAKIDGIIVSNTTIARPETLRSA---HKAEAGGLSGAPLFEPSTAVLRNLYQRTEgkMTLIGVGGVSSGKDAYEKIRNGASAVQLYSALVYEGtPLVSRIKKELASLLAENGFSSVDEAVGS 344
                 346799*******************9999995544567889998888899999999999************96..67888888899999999999888755555559*******999844689******************99987666655...56789*****9999889999999999988789***********************************8999***********************95 PP

>> TIGR01954  nusA_Cterm_rpt: transcription termination factor NusA, C-terminal duplication
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   6.8e-05     0.094       1      19 [.     322     340 ..     322     341 .. 0.92

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 6.8e-05
   TIGR01954   1 ideeiaqlLveeGfstvEd 19 
                 i +e+a lL+e Gfs+v++
  MMETSP1137-20121227|1108_1 322 IKKELASLLAENGFSSVDE 340
                 5689*************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (363 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.31u 0.17s 00:00:00.48 Elapsed: 00:00:00.45
# Mc/sec: 1064.71
//
Query:       MMETSP1137-20121227|1109_1  [L=503]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (503 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       118  (0.0287665); expected 82.0 (0.02)
Passed bias filter:                       97  (0.023647); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.16s 00:00:00.52 Elapsed: 00:00:00.53
# Mc/sec: 1252.65
//
Query:       MMETSP1137-20121227|1110_1  [L=206]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (206 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        73  (0.0177962); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.17s 00:00:00.37 Elapsed: 00:00:00.28
# Mc/sec: 971.06
//
Query:       MMETSP1137-20121227|1111_1  [L=259]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.9e-08   29.0   0.1    9.9e-08   29.0   0.0    1.6  2  TIGR03466 HpnA: hopanoid-associated sugar epimerase
    8.9e-05   19.3   0.0    0.00013   18.7   0.0    1.2  1  TIGR01179 galE: UDP-glucose 4-epimerase
    0.00038   17.9   0.1    0.00079   16.9   0.0    1.5  2  TIGR01777 yfcH: TIGR01777 family protein
     0.0004   17.4   0.0    0.00066   16.7   0.0    1.3  1  TIGR04180 EDH_00030: NAD dependent epimerase/dehydratase, LLPSF_EDH_00030 family
     0.0047   13.9   0.0      0.007   13.3   0.0    1.2  1  TIGR01181 dTDP_gluc_dehyt: dTDP-glucose 4,6-dehydratase


Domain annotation for each model (and alignments):
>> TIGR03466  HpnA: hopanoid-associated sugar epimerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.0   0.0   1.2e-10   9.9e-08       3      71 ..      30     100 ..      28     105 .. 0.91
   2 ?   -2.3   0.4      0.41   3.4e+02      96     131 ..     182     217 ..     159     230 .. 0.52

  Alignments for each domain:
  == domain 1    score: 29.0 bits;  conditional E-value: 1.2e-10
   TIGR03466   3 vlvtGatGFvGsavvrllleeGeevrvlvrktsd..rrnleeldvEiveGdlkdeaslkkalkGcealfHv 71 
                  lv G++GFvGs+v r  ++ G +v  l r++++   ++ +  +v+  +Gd +d++++++ ++  +a++H 
  MMETSP1137-20121227|1111_1  30 LLVLGGSGFVGSEVCRNAVDCGFQVTSLSRRGANpdPKDXRLQQVDWRAGDATDKKTVASLVANADAVVHA 100
                 69****************************98862257888889*************************96 PP

  == domain 2    score: -2.3 bits;  conditional E-value: 0.41
   TIGR03466  96 vleaAleagvervvytssvatlgvkedgkeadettp 131
                   + A++a  +    ts va  + ++   + ++ ++
  MMETSP1137-20121227|1111_1 182 ADAXAANAAANAAAVTSIVALCARRSPYATXTKRNK 217
                 223344455555555666665555544444444444 PP

>> TIGR01179  galE: UDP-glucose 4-epimerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.0   1.6e-07   0.00013       1      80 [.      29     103 ..      29     112 .. 0.84

  Alignments for each domain:
  == domain 1    score: 18.7 bits;  conditional E-value: 1.6e-07
   TIGR01179   1 kiLvtGgaGyiGshvvrqllekgkevvvlDnlskgskealkalekitevklvegdladkekleavleeekidaviHfaal 80 
                 ++Lv Gg+G++Gs v+r+  + g++v     ls+  ++  ++  ++++v    gd +dk+++++++++   dav+H  +l
  MMETSP1137-20121227|1111_1  29 RLLVLGGSGFVGSEVCRNAVDCGFQVTS---LSRRGANPDPKDXRLQQVDWRAGDATDKKTVASLVAN--ADAVVHAVGL 103
                 58***********************975...56666666666666889****************9975..6999998776 PP

>> TIGR01777  yfcH: TIGR01777 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.0   9.7e-07   0.00079       2      66 ..      31     102 ..      30     105 .. 0.70
   2 ?   -2.4   0.1      0.73     6e+02      54      66 ..     192     204 ..     159     244 .. 0.47

  Alignments for each domain:
  == domain 1    score: 16.9 bits;  conditional E-value: 9.7e-07
   TIGR01777   2 litGgtGliGralveelekkghevviltrskekek.eekkesakevaee......aeeealegvdavinLaG 66 
                 l+ Gg+G++G++++++  + g +v+ l+r+  +   ++ + ++ ++ +       + ++ + ++dav++  G
  MMETSP1137-20121227|1111_1  31 LVLGGSGFVGSEVCRNAVDCGFQVTSLSRRGANPDpKDXRLQQVDWRAGdatdkkTVASLVANADAVVHAVG 102
                 789**************************9765431333334445544443332233337788999999877 PP

  == domain 2    score: -2.4 bits;  conditional E-value: 0.73
   TIGR01777  54 alegvdavinLaG 66 
                 +   v+ ++ L+ 
  MMETSP1137-20121227|1111_1 192 NAAAVTSIVALCA 204
                 3333444444443 PP

>> TIGR04180  EDH_00030: NAD dependent epimerase/dehydratase, LLPSF_EDH_00030 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0     8e-07   0.00066       2      80 ..      31     103 ..      30     109 .. 0.89

  Alignments for each domain:
  == domain 1    score: 16.7 bits;  conditional E-value: 8e-07
   TIGR04180   2 lvtGadGfiGshlvealvekGaevralvlynsfnswGwldevekevkkeievvlGdirdaesvkkavkgvdvvfhlaal 80 
                 lv G  Gf+Gs +  + v+ G++v++l +       G   + ++   ++++  +Gd  d+++v + v ++d+v+h   l
  MMETSP1137-20121227|1111_1  31 LVLGGSGFVGSEVCRNAVDCGFQVTSLSR------RGANPDPKDXRLQQVDWRAGDATDKKTVASLVANADAVVHAVGL 103
                 899*********************98766......4555566778899***************************8776 PP

>> TIGR01181  dTDP_gluc_dehyt: dTDP-glucose 4,6-dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   0.0   8.6e-06     0.007       1      79 [.      29      99 ..      29     114 .. 0.77

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 8.6e-06
   TIGR01181  1 klLvtGGaGfiGsnfvryileetpdaevvvlDkLtyagnkenlkdledeerysfvkgdiadrelverllkeedvdavvn 79
                +lLv GG+Gf+Gs++ r +++    ++v+ l +      +   kd +  +++ +  gd +d+++v++l+++ d  avv+
  MMETSP1137-20121227|1111_1 29 RLLVLGGSGFVGSEVCRNAVDCG--FQVTSLSRRGANPDP---KDXR-LQQVDWRAGDATDKKTVASLVANAD--AVVH 99
                589*****************944..777777665444333...3333.24588999************99665..8988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (259 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       303  (0.0738664); expected 82.0 (0.02)
Passed bias filter:                      144  (0.0351048); expected 82.0 (0.02)
Passed Vit filter:                        20  (0.00487567); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.28u 0.17s 00:00:00.45 Elapsed: 00:00:00.55
# Mc/sec: 621.55
//
Query:       MMETSP1137-20121227|1112_1  [L=142]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (142 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       102  (0.0248659); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.17s 00:00:00.33 Elapsed: 00:00:00.34
# Mc/sec: 551.25
//
Query:       MMETSP1137-20121227|1113_1  [L=248]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (248 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       109  (0.0265724); expected 82.0 (0.02)
Passed bias filter:                      105  (0.0255973); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.13s 00:00:00.36 Elapsed: 00:00:00.39
# Mc/sec: 839.32
//
Query:       MMETSP1137-20121227|1114_1  [L=244]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (244 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       137  (0.0333983); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.19s 00:00:00.41 Elapsed: 00:00:00.28
# Mc/sec: 1150.19
//
Query:       MMETSP1137-20121227|1115_1  [L=246]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (246 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       135  (0.0329108); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.14s 00:00:00.39 Elapsed: 00:00:00.36
# Mc/sec: 901.93
//
Query:       MMETSP1137-20121227|1116_1  [L=358]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (358 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        88  (0.0214529); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.13s 00:00:00.39 Elapsed: 00:00:00.60
# Mc/sec: 787.53
//
Query:       MMETSP1137-20121227|1118_1  [L=92]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.4e-12   43.4   2.4    7.4e-12   42.7   1.7    1.4  1  TIGR03038 PS_II_psbM: photosystem II reaction center protein PsbM


Domain annotation for each model (and alignments):
>> TIGR03038  PS_II_psbM: photosystem II reaction center protein PsbM
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.7   1.7   1.8e-15   7.4e-12       1      32 [.      39      70 ..      39      71 .. 0.95

  Alignments for each domain:
  == domain 1    score: 42.7 bits;  conditional E-value: 1.8e-15
   TIGR03038  1 MEVnilGfiAtlLFilvPtvFLliLYiqTasr 32
                +EV+  +f+A++L+ ++P+vFL++LYiq++++
  MMETSP1137-20121227|1118_1 39 LEVSFGAFLAVILGLFIPVVFLVTLYIQSEAQ 70
                69***************************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (92 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       160  (0.0390054); expected 82.0 (0.02)
Passed bias filter:                      122  (0.0297416); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.15u 0.14s 00:00:00.29 Elapsed: 00:00:00.53
# Mc/sec: 229.11
//
Query:       MMETSP1137-20121227|1119_1  [L=1024]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1024 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       363  (0.0884934); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.69u 0.14s 00:00:00.83 Elapsed: 00:00:01.00
# Mc/sec: 1351.57
//
Query:       MMETSP1137-20121227|1120_1  [L=235]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.3e-06   26.4   0.0    1.4e-06   26.2   0.0    1.2  1  TIGR03354 VI_FHA: type VI secretion system FHA domain protein
  ------ inclusion threshold ------
      0.025   12.7   0.1      0.046   11.8   0.1    1.4  1  TIGR00028 Mtu_PIN_fam: Mycobacterium tuberculosis PIN domain family
       0.12    9.1   2.6        1.5    5.5   0.0    2.4  3  TIGR02500 type_III_yscD: type III secretion apparatus protein, YscD/HrpQ family


Domain annotation for each model (and alignments):
>> TIGR03354  VI_FHA: type VI secretion system FHA domain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.2   0.0   1.1e-09   1.4e-06      22     104 ..      18     106 ..      15     220 .. 0.76

  Alignments for each domain:
  == domain 1    score: 26.2 bits;  conditional E-value: 1.1e-09
   TIGR03354  22 eeeggtiGrsedcdWvlpDperlvssrhaeiekrdgaylltdl.....StnGvflnnsgsplrrgepvrLeqgdelrlGdyeirvsl......a 104
                 e e  t+Gr++ c+ +lpD+   vs++ha+++ ++ +  l+ l     S+ G+ +n  g++l++g    L++gde+ +G  + rv+       +
  MMETSP1137-20121227|1120_1  18 EGEKYTLGRKD-CHVTLPDKA--VSKKHATLQLTGMQQQLQLLlvdegSRFGTTVN--GQRLSEGVARELTDGDEVGVGTSVFRVRRlvlgfcT 106
                 667789***87.********9..********998876554433333349*******..*********************998888644555552 PP

>> TIGR00028  Mtu_PIN_fam: Mycobacterium tuberculosis PIN domain family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.1   3.4e-05     0.046      38      87 ..     156     204 ..     149     218 .. 0.82

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 3.4e-05
   TIGR00028  38 atcpltlagflRlltnrtvlgapltpaeAiavvaaflaaprhellgaedv 87 
                 + cp++  ++lRl   r+v+ ++l+ ++A++v   + + ++ + l a+ v
  MMETSP1137-20121227|1120_1 156 HACPIVSPAWLRLCAARSVVMSALPDEKAAEVTPPMEKYAANMELPAD-V 204
                 88*****************************99888877776644443.3 PP

>> TIGR02500  type_III_yscD: type III secretion apparatus protein, YscD/HrpQ family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   0.0    0.0011       1.5      19      49 ..      18      48 ..       8      58 .. 0.79
   2 ?    3.2   0.0    0.0055       7.5     368     383 ..      62      77 ..      58      88 .. 0.88
   3 ?   -2.3   0.2      0.25   3.4e+02     105     157 ..     136     191 ..     129     217 .. 0.51

  Alignments for each domain:
  == domain 1    score: 5.5 bits;  conditional E-value: 0.0011
   TIGR02500 19 eGd.lvlGteddcdivLsDgglaprhvslgvt 49
                eG+ ++lG  +dc + L D+ ++++h++l+ t
  MMETSP1137-20121227|1120_1 18 EGEkYTLGR-KDCHVTLPDKAVSKKHATLQLT 48
                455589994.478999*************976 PP

  == domain 2    score: 3.2 bits;  conditional E-value: 0.0055
   TIGR02500 368 plryvtladGqRlfeG 383
                  +r+ t+++GqRl+eG
  MMETSP1137-20121227|1120_1  62 GSRFGTTVNGQRLSEG 77 
                 57899**********9 PP

  == domain 3    score: -2.3 bits;  conditional E-value: 0.25
   TIGR02500 105 tptlsaepanevddlvlgs...rphlekralslllalavallltssvviepetrpp 157
                 t++l    +++ ++lvl      p ++ ++l l+ a  v + + +  ++  +t p 
  MMETSP1137-20121227|1120_1 136 TTHLLMPSIKMTPKLVLALahaCPIVSPAWLRLCAARSVVMSALPDEKAAEVTPPM 191
                 55555556666666666433333333334444444444444444433333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (235 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        97  (0.023647); expected 82.0 (0.02)
Passed bias filter:                       96  (0.0234032); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.23u 0.15s 00:00:00.38 Elapsed: 00:00:00.43
# Mc/sec: 721.34
//
Query:       MMETSP1137-20121227|1121_1  [L=347]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      8e-08   30.5   0.0    1.3e-07   29.8   0.0    1.3  1  TIGR02009 PGMB-YQAB-SF: beta-phosphoglucomutase family hydrolase
  ------ inclusion threshold ------
       0.04   11.9   0.1      0.069   11.2   0.0    1.4  1  TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3
      0.048   11.5   0.0       0.11   10.2   0.0    1.6  2  TIGR01990 bPGM: beta-phosphoglucomutase


Domain annotation for each model (and alignments):
>> TIGR02009  PGMB-YQAB-SF: beta-phosphoglucomutase family hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.8   0.0   9.6e-11   1.3e-07       8     186 .]     135     310 ..     129     310 .. 0.84

  Alignments for each domain:
  == domain 1    score: 29.8 bits;  conditional E-value: 9.6e-11
   TIGR02009   8 lDGvlvdtaslHakAwkaladklgle.fdeqineslkGlkredivrailksrgskelseekieqlaerknelyrellrltgaevlpgienlleelkkkkiavalgsss..knakaiLaklgltdlfdavvdasevkegKPaPetFLaaaekLgvkpeecvvfEDaeaGveaaraagmfavav 186
                  D v     +l ++Aw ++a+  ++   d++  ++   +  e+ v+++       + +  +i +la +  el ++l r+++ e  +g+   l+ l++  ++  l s    ++++  ++++g++++f+ +v a++        etFL+   kL+ +p++cvvfE    G++aa+    +ava+
  MMETSP1137-20121227|1121_1 135 WDVVFDGLLELNMQAWAEIAARHSYPaPDADDVQRAMDMRAERAVERVFLW----TNDWGEIRGLAFEFYELSSRLFREHTFEPSEGCVPWLKLLNEYSVPCCLCSRLdaASTDHAVQTAGVDKYFTGIVTADDGPAT--LEETFLLGFVKLKRPPSRCVVFENDPKGITAAHDVLAKAVAI 310
                 554554556788999999999999984567777777778888888776666....46888999***************998*************************754489999*****************984333..369******************************888888876 PP

>> TIGR01509  HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0     5e-05     0.069      88     151 ..     244     307 ..     237     310 .. 0.77

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 5e-05
   TIGR01509  88 spravrlgledkfdkviddvgsgKPdpdiylqalkklglkpeeclfvdDsaagieaakaaGmkt 151
                  +++ + g++++f +++++   +   ++ +l    kl+ +p++c++++  ++gi aa+++ +k+
  MMETSP1137-20121227|1121_1 244 DHAVQTAGVDKYFTGIVTADDGPATLEETFLLGFVKLKRPPSRCVVFENDPKGITAAHDVLAKA 307
                 55666677777777777755556666788999999**********************9876555 PP

>> TIGR01990  bPGM: beta-phosphoglucomutase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0      0.84   1.1e+03       5      29 ..     132     156 ..     130     163 .. 0.78
   2 ?   10.2   0.0   8.4e-05      0.11      99     186 ..     223     310 ..     205     311 .. 0.75

  Alignments for each domain:
  == domain 1    score: -2.8 bits;  conditional E-value: 0.84
   TIGR01990   5 iFDlDGvitdtaeyhylawkklade 29 
                 +F  D v     e+  +aw ++a++
  MMETSP1137-20121227|1121_1 132 LFKWDVVFDGLLELNMQAWAEIAAR 156
                 6777777777789999999999986 PP

  == domain 2    score: 10.2 bits;  conditional E-value: 8.4e-05
   TIGR01990  99 eelkkkkikialasaskna..klvleklelkdkfdaivdaaevkkgkPdPeiFlaaaeklgvspeecigieDaeaGieaikaagilavgv 186
                 + l++  + + l s    a     ++  +++++f+ iv a++        e Fl +  kl+  p++c+++e+   Gi+a+++  + av++
  MMETSP1137-20121227|1121_1 223 KLLNEYSVPCCLCSRLDAAstDHAVQTAGVDKYFTGIVTADDGP--ATLEETFLLGFVKLKRPPSRCVVFENDPKGITAAHDVLAKAVAI 310
                 55566666666666544331145677778888888888777543..334699****************************9999888887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (347 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        54  (0.0131643); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.26u 0.14s 00:00:00.40 Elapsed: 00:00:00.43
# Mc/sec: 1065.12
//
Query:       MMETSP1137-20121227|1122_1  [L=161]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.2e-86  286.3   2.9    5.7e-86  286.1   2.0    1.0  1  TIGR02880 cbbX_cfxQ: CbbX protein
    4.7e-46  154.8   0.7    5.2e-46  154.6   0.5    1.0  1  TIGR02881 spore_V_K: stage V sporulation protein K
    3.1e-35  119.6   3.1    7.8e-35  118.2   2.2    1.6  1  TIGR03922 T7SS_EccA: type VII secretion AAA-ATPase EccA
      0.001   16.3   0.0     0.0018   15.5   0.0    1.3  1  TIGR01128 holA: DNA polymerase III, delta subunit


Domain annotation for each model (and alignments):
>> TIGR02880  cbbX_cfxQ: CbbX protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  286.1   2.0   5.6e-89   5.7e-86     121     279 ..       1     159 [.       1     161 [] 0.99

  Alignments for each domain:
  == domain 1    score: 286.1 bits;  conditional E-value: 5.6e-89
   TIGR02880 121 mggvlfideayylyrpdnerdygqeaieillqvmenqrddlvvilagykdrmdsffesnpglssrvahhvdfpdyseeellaiaellleeqqyrlsaeaeealaeyialrrkqpffanarsirnaldrarlrqanrllaaadkvldksdlvtieaedll 279
                 mggvlfideayyly+pdnerdyg+eaieillqvmenqr+dlvvi+agykdrmdsf+esnpglssrva+h+dfpdy+ +ell+ia l+leeqqyrl++eae+ l eyi++r++ p fanar+i na+d ar+r+anr++++ ++vl+ksdlvtieaed++
  MMETSP1137-20121227|1122_1   1 MGGVLFIDEAYYLYKPDNERDYGAEAIEILLQVMENQREDLVVIFAGYKDRMDSFYESNPGLSSRVANHIDFPDYTPDELLQIARLMLEEQQYRLTQEAEQLLLEYIQRRKELPLFANARTITNAIDAARMRHANRMFNSGNRVLTKSDLVTIEAEDVR 159
                 8************************************************************************************************************************************************************97 PP

>> TIGR02881  spore_V_K: stage V sporulation protein K
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  154.6   0.5   5.1e-49   5.2e-46     105     261 .]       1     158 [.       1     158 [. 0.95

  Alignments for each domain:
  == domain 1    score: 154.6 bits;  conditional E-value: 5.1e-49
   TIGR02881 105 lGGvlfideayslar.GGekdfGkeaidtlvkemedkreelvlilaGysdemdyflslnPGlksrfpisldfpdytveelleiakkmveereyklteeakaklreklakvksasekefsnarlvrnliekairrqavrllkksd..vskedllllkkedl 261
                 +GGvlfideay l +   e+d+G eai+ l++ me++re+lv+i+aGy+d md f + nPGl sr++ ++dfpdyt +ell+ia+ m+ee++y+lt+ea++ l e++++ k  +   f+nar++ n i+ a  r+a r+++  +  ++k+dl+++++ed+
  MMETSP1137-20121227|1122_1   1 MGGVLFIDEAYYLYKpDNERDYGAEAIEILLQVMENQREDLVVIFAGYKDRMDSFYESNPGLSSRVANHIDFPDYTPDELLQIARLMLEEQQYRLTQEAEQLLLEYIQRRK--ELPLFANARTITNAIDAARMRHANRMFNSGNrvLTKSDLVTIEAEDV 158
                 6************983579****************************************************************************************9988..5789***********************98763369*********995 PP

>> TIGR03922  T7SS_EccA: type VII secretion AAA-ATPase EccA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  118.2   2.2   7.6e-38   7.8e-35     375     549 ..       1     159 [.       1     161 [] 0.94

  Alignments for each domain:
  == domain 1    score: 118.2 bits;  conditional E-value: 7.6e-38
   TIGR03922 375 LggvlFlDEayaLvekrdgakddfGleaidtLLarlEndRdrlvviiAGYekdlDklLevneGLrsRFtrkieFesYspdElveiakrmaeerdsvlddaAaealleaatklaqestpdanGverrglDiagngrfvRnvvEraeeeRdfRldasdrldevtvddlkeiteddva 549
                 +ggvlF+DEay L +   +++ d+G+eai+ LL  +En+R++lvvi AGY++ +D + e n+GL sR + +i+F+ Y+pdEl +ia+ m ee++ +l+++A++ lle +               r+ l    n+r + n +++a+     R+ +s     +t++dl +i ++dv+
  MMETSP1137-20121227|1122_1   1 MGGVLFIDEAYYLYKP--DNERDYGAEAIEILLQVMENQREDLVVIFAGYKDRMDSFYESNPGLSSRVANHIDFPDYTPDELLQIARLMLEEQQYRLTQEAEQLLLEYIQ-------------RRKELPLFANARTITNAIDAARMRHANRMFNSG-NRVLTKSDLVTIEAEDVR 159
                 69************99..77889********************************************************************************9998653.............356678999*********************999.8999***********996 PP

>> TIGR01128  holA: DNA polymerase III, delta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   1.8e-06    0.0018      75     155 ..      23     107 ..       6     110 .. 0.92

  Alignments for each domain:
  == domain 1    score: 15.5 bits;  conditional E-value: 1.8e-06
   TIGR01128  75 gakglkaLeeylenpppdtlllieap..kldkrkkktkwlk..nakvvecktpkeeelpkwiqarlkelglkidneavqlLaelv 155
                 ga+ ++ L++++en  +d ++++ +   ++d+  +++  l    a+ +++   +++el + ++  l+e++ ++++ea qlL+e++
  MMETSP1137-20121227|1122_1  23 GAEAIEILLQVMENQREDLVVIFAGYkdRMDSFYESNPGLSsrVANHIDFPDYTPDELLQIARLMLEEQQYRLTQEAEQLLLEYI 107
                 4455999******************9999**************9**************************************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (161 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       182  (0.0443686); expected 82.0 (0.02)
Passed bias filter:                      142  (0.0346173); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.24u 0.19s 00:00:00.43 Elapsed: 00:00:00.38
# Mc/sec: 559.22
//
Query:       MMETSP1137-20121227|1123_1  [L=334]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (334 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       121  (0.0294978); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.16s 00:00:00.42 Elapsed: 00:00:00.32
# Mc/sec: 1377.64
//
Query:       MMETSP1137-20121227|1124_1  [L=564]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (564 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        69  (0.0168211); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.12s 00:00:00.47 Elapsed: 00:00:00.85
# Mc/sec: 875.79
//
Query:       MMETSP1137-20121227|1125_1  [L=269]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (269 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        42  (0.0102389); expected 82.0 (0.02)
Passed bias filter:                       40  (0.00975134); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.14s 00:00:00.35 Elapsed: 00:00:00.30
# Mc/sec: 1183.50
//
Query:       MMETSP1137-20121227|1126_1  [L=140]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (140 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        64  (0.0156021); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.13s 00:00:00.29 Elapsed: 00:00:00.34
# Mc/sec: 543.48
//
Query:       MMETSP1137-20121227|1127_1  [L=716]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.1e-07   27.9   0.7    3.5e-07   27.1   0.5    1.2  1  TIGR02031 BchD-ChlD: magnesium chelatase ATPase subunit D
    5.8e-06   23.0   0.0     0.0044   13.5   0.0    2.2  2  TIGR00368 TIGR00368: Mg chelatase-like protein
     0.0025   14.1   3.5      0.013   11.8   1.6    2.3  2  TIGR02442 Cob-chelat-sub: cobaltochelatase subunit


Domain annotation for each model (and alignments):
>> TIGR02031  BchD-ChlD: magnesium chelatase ATPase subunit D
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.1   0.5   2.5e-10   3.5e-07      76     283 ..     413     645 ..     400     652 .. 0.71

  Alignments for each domain:
  == domain 1    score: 27.1 bits;  conditional E-value: 2.5e-10
   TIGR02031  76 asgkrvlqkgllaeanrgvlyvdelnlldeslvnrlldaldegvvivereGisvrePakfvLiat.......ydpe...egeealrehllDRlalivsleevaslearveivrl........elaeeveeevndelelakaqiekaRellkqV......tiseeqv...kelvleavklGveghRadlfavraAkalaAlegReeVeeeDlklAvelvllpRatrleekepeqee 283
                   g  vl  g l  a+ g+  +de ++++e     + +++++ +v + + Gi+    a+  ++a        y+p+   e + +l+ +ll R  l   + ++ s ++ +e+ r         + ++  +e+ +   e+++a i ++R+  + V       i +e v   +e+v  +   G  + R  l  +r+ +ala ++ R +V +eD+  A +l+ l Ra++ +  e+++e+
  MMETSP1137-20121227|1127_1 413 VTGDLVLEGGALVLADMGICCIDEFDKMEEADRTAIHEVMEQQTVSIAKAGITTTLNARTSVLAAanpaysrYNPSkspEENIQLPAALLSRFDLLWLILDKPSKTHDLELARHvtyvhqfgHHPDLDFETLK--PEMMRAFISHVRQFEPTVpdevaaYIVDEYVnmrQEAVADTKGFGFTSARTLLAIMRLSQALARVNLRGHVIREDIVEARRLMSLSRASVANAGEEDEEK 645
                 46899**************************************************9999888876222222255543333456899******98754433333333336665554333433222222222222..245566677778776655332222244444422235556666689*********************************************9997776554 PP

>> TIGR00368  TIGR00368: Mg chelatase-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.0   0.0   0.00029      0.39      69     236 ..     211     389 ..     208     394 .. 0.69
   2 !   13.5   0.0   3.2e-06    0.0044     280     383 ..     413     506 ..     405     518 .. 0.80

  Alignments for each domain:
  == domain 1    score: 7.0 bits;  conditional E-value: 0.00029
   TIGR00368  69 lkkeGgrfdlpiaigilaaseqldakk...ldeylllgelal...dGklravkgv.lpaiaaakkselkfiivakenaeeaslvdglnvyivddl.kevvkfle...gkeklepatetk.kksavevslaltldlkdvkGqqr.akraleiaaaGghnllllG.PPGsGktllakrlqgllP 236
                 l+  G++fd    i i +  +++   +   l  + l gel+     G++ +v+g+ lp + +  k  ++  +v+   ++ +s+v  ++ y      +e+ +f+    g+++++++++   ++   + + +  l l  v G  r  k ++   + G+ n+ l+G PPG  k  l k++ +l P
  MMETSP1137-20121227|1127_1 211 LQTRGSKFDKFQEIKIQEEADEVPTGHvprLMTVHLCGELTRacsAGDIVTVTGIfLPQVSTGFKALKA-GLVTDTFLKATSVVAHKKSYQDYMPdEETQAFIRekeGEDMYTQMAQSIaPEIFGHEDVKKALLLLMVGGPTRqMKDGMR--IRGDINVCLMGxPPGVAKSQLLKQVASLAP 389
                 566788888877777777777665543122677888999975222689999999845777777666555.78899999999***999999743321456666652326666666655440444456677777777778776541566665..57********989**************998 PP

  == domain 2    score: 13.5 bits;  conditional E-value: 3.2e-06
   TIGR00368 280 vGGGaiPkPGeislahnGvlfldellefkrkvldalrePledgeisisrakakilyParfqlvaamnpsPtGhygdkitdnrcspqqierylkklsgplldrid 383
                 v G  + + G + la  G+  +de   ++     a+ e +e++ +si++a  + +  ar  ++aa np+ + +        + sp++      +l ++ll r+d
  MMETSP1137-20121227|1127_1 413 VTGDLVLEGGALVLADMGICCIDEFDKMEEADRTAIHEVMEQQTVSIAKAGITTTLNARTSVLAAANPAYSRYNP------SKSPEENI----QLPAALLSRFD 506
                 666677778999*******************************************************98554332......33444433....35556666665 PP

>> TIGR02442  Cob-chelat-sub: cobaltochelatase subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.0     0.031        43       6      22 ..     332     348 ..     330     395 .. 0.71
   2 !   11.8   1.6   9.2e-06     0.013     113     325 ..     414     647 ..     405     656 .. 0.75

  Alignments for each domain:
  == domain 1    score: 0.1 bits;  conditional E-value: 0.031
   TIGR02442   6 ivgqeklklaLllnavd 22 
                 i g+e++k+aLll  v 
  MMETSP1137-20121227|1127_1 332 IFGHEDVKKALLLLMVG 348
                 78***********9984 PP

  == domain 2    score: 11.8 bits;  conditional E-value: 9.2e-06
   TIGR02442 113 eGekafqpGlLaeahrgiLYiDEvNLLddhlvdvlLdaaasGvnrvEReGlsvshparfvLvgTmNp...........EEG.eLrpqllDrfglavevaasedpeerveivkrrlafdadpeafaakykkee.eelrerivaArsllpev......rlsdell...eliaelcieleveghRAdivlaraaralAAldgrrevteedvreaaeLvlkhRrrrkpfeeeqekeekk 325
                 +G+ +++ G L  a+ gi  iDE   +++     + +++++ ++ + + G++++  ar   ++  Np           EE  +L   ll rf l   +  + ++ + +e+++++    +  +  + ++++ + e +r+ i + r+  p v       + de +   ++ ++ ++ ++  + R  ++++r ++alA ++ r +v  ed+ ea +L    R+      ee  +e+k+
  MMETSP1137-20121227|1127_1 414 TGDLVLEGGALVLADMGICCIDEFDKMEEADRTAIHEVMEQQTVSIAKAGITTTLNARTSVLAAANPaysrynpskspEENiQLPAALLSRFDLLWLILDKPSKTHDLELARHVTYVHQFGHHPDLDFETLKpEMMRAFISHVRQFEPTVpdevaaYIVDEYVnmrQEAVADTKGFGFTSARTLLAIMRLSQALARVNLRGHVIREDIVEARRLMSLSRASVANAGEE-DEEKKD 647
                 7999999999999***********9999999999999999999999******999999988888775444444455555543788899****99999999999999999999988888888888888887541667888999999887762222222444333000334444556788999*********************************99999985544443.122222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (716 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       157  (0.038274); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.50u 0.17s 00:00:00.67 Elapsed: 00:00:00.68
# Mc/sec: 1389.77
//
Query:       MMETSP1137-20121227|1128_1  [L=603]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0043   14.1   0.2      0.026   11.5   0.1    1.9  2  TIGR01420 pilT_fam: twitching motility protein


Domain annotation for each model (and alignments):
>> TIGR01420  pilT_fam: twitching motility protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.0     0.022        90     125     142 ..      37      54 ..      24      58 .. 0.89
   2 !   11.5   0.1   6.4e-06     0.026      36      91 ..     351     406 ..     328     429 .. 0.80

  Alignments for each domain:
  == domain 1    score: -0.1 bits;  conditional E-value: 0.022
   TIGR01420 125 ilvtGptGsGKsttlAsl 142
                 +lv+G+ GsG   t+ s+
  MMETSP1137-20121227|1128_1  37 VLVAGSCGSGMGQTIQSI 54 
                 9**********9999886 PP

  == domain 2    score: 11.5 bits;  conditional E-value: 6.4e-06
   TIGR01420  36 ieeepldaeevqkllkeileekqreeleekkeldfavslaelaRfRvnvfkqrgav 91 
                 ++ ++ + ++v+k++k++l +++++++ + ke d a+++++++R+R+ +  +r ++
  MMETSP1137-20121227|1128_1 351 TKLSTSTVDQVRKVAKQMLFQREARSFLKVKEEDAAIEFTKIGRLRAPADVKRYST 406
                 4556678899************************************9887777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (603 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       110  (0.0268162); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.16s 00:00:00.56 Elapsed: 00:00:00.69
# Mc/sec: 1153.47
//
Query:       MMETSP1137-20121227|1129_1  [L=432]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.7e-60  201.9   8.9    7.8e-59  197.1   6.2    2.0  1  TIGR02475 CobW: cobalamin biosynthesis protein CobW
    1.5e-05   22.4   1.6      0.041   11.2   0.2    2.4  2  TIGR00073 hypB: hydrogenase accessory protein HypB
    0.00016   19.3   0.3     0.0004   18.1   0.2    1.6  1  TIGR00101 ureG: urease accessory protein UreG
     0.0011   16.6   3.5       0.35    8.5   0.1    2.6  2  TIGR00231 small_GTP: small GTP-binding protein domain
     0.0037   14.3   0.1     0.0063   13.6   0.0    1.3  1  TIGR03819 heli_sec_ATPase: helicase/secretion neighborhood ATPase


Domain annotation for each model (and alignments):
>> TIGR02475  CobW: cobalamin biosynthesis protein CobW
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  197.1   6.2   9.5e-62   7.8e-59       2     341 ..      25     351 ..      24     352 .. 0.88

  Alignments for each domain:
  == domain 1    score: 197.1 bits;  conditional E-value: 9.5e-62
   TIGR02475   2 akipvtvvtGflGaGkttlirhllenaeGkriavivnefGdlGidGeilkacgieacseeeivelanGcicctvaddflptlekllaree....eldhilietsGlalpkplvqafqw.peirsrvtvdgvvavvdsaavaaGrfaedldaleaqraadenldhespleelfedqlacadlvilnkadlldaaglekvraeiaeelpravkiveaeeGevdaevllGl.gaaaeedlearkshhdleeeeeehdhde.fdsvvvdlgevadvdalaerleklvee..edvlrikGfvevegkplrllvqavGkrvdsyydrawkaeearstrlvviGlkdldeaaiaaa 341
                 +++pvtv+tGflG+Gkttl++h+l  ++Gk++avi nefG++Gid  +l + +    ++eei+e+ nGcicctv +d++ +l+kl +r +    +ld i+iet+G+a p p+ q+f    +++s + +dg+v+++d++ +      ++ld+   ++        ++ +e+   +q+a ad ++lnk+dl++  +le+v+a +++ +++   i  +++ +v+ + +l + g + +  le  +   ++   + eh+hd+ + s+ +  +   d+d + + ++k++++  +d++r+kG + ++    +++ qav   ++  +  +w a+e+r+++lv iG++ ld+++i+++
  MMETSP1137-20121227|1129_1  25 RRVPVTVLTGFLGSGKTTLLNHILTATHGKKLAVIENEFGEVGIDDALLSKNTKM-QTDEEIIEMMNGCICCTVRQDLVKVLTKLAKRIKagtlKLDGIVIETTGMADPAPVAQTFFVdDTVKSFARLDGIVTLIDAKHIE-----QHLDE---EK--------QEGVENEAVEQVAFADRMLLNKTDLVSEXDLERVEARLRS-INKXAPIQRCQQSKVSVDSVLDIrGFDLKRTLEMDPEFLNT---DGEHEHDQtVTSLSITQPGSVDLDMVEQWVSKILQTkgNDIFRMKGVLSISHADEKFVYQAVHMIFSGSFXEPWGAQEKRESKLVFIGRN-LDHDEIRRE 351
                 69***********************************************998665.56778************************99865333389******************98761679**************98663.....33332...22........12333334479**************************985.788899**********9999987467889999999998884...559999753899*********************9873369************************************************99.*****9986 PP

>> TIGR00073  hypB: hydrogenase accessory protein HypB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.2   0.2     5e-05     0.041      32      67 ..      29      63 ..      12     129 .. 0.68
   2 !   10.1   0.0   0.00011     0.086     156     196 ..     184     222 ..     170     236 .. 0.82

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 5e-05
   TIGR00073 32 vlnllssiGsGktlllekliealkkevkiavieGDl 67
                v  l +  GsGkt+ll+++++a++   k+avie + 
  MMETSP1137-20121227|1129_1 29 VTVLTGFLGSGKTTLLNHILTATHG-KKLAVIENEF 63
                45567889***********999887.89****9765 PP

  == domain 2    score: 10.1 bits;  conditional E-value: 0.00011
   TIGR00073 156 keadlilinkvdlveavdadvekvkadvkkinPeveiilvs 196
                 + ad +l+nk+dlv   + d+e+v+a +++in  + i + +
  MMETSP1137-20121227|1129_1 184 AFADRMLLNKTDLVS--EXDLERVEARLRSINKXAPIQRCQ 222
                 679**********98..5789***********999986654 PP

>> TIGR00101  ureG: urease accessory protein UreG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.2   4.9e-07    0.0004       6     102 ..      32     129 ..      27     149 .. 0.78

  Alignments for each domain:
  == domain 1    score: 18.1 bits;  conditional E-value: 4.9e-07
   TIGR00101   6 vagpvgsgktaliealtrelakkydlavitndiy.tkedaeflvknsvlpperilgvetggcphtairedaslnleave.elearfpdlelvliesggd 102
                 ++g +gsgkt+l++ +  + +   +lavi n+      d  +l kn  +  +  +     gc   ++r+d    l  ++  ++a   +l+ ++ie+ g 
  MMETSP1137-20121227|1129_1  32 LTGFLGSGKTTLLNHILTATHG-KKLAVIENEFGeVGIDDALLSKNTKMQTDEEIIEMMNGCICCTVRQDLVKVLTKLAkRIKAGTLKLDGIVIETTGM 129
                 57999*********99877654.58*******8624567889999998877665555678999999****99888776516899999999999999885 PP

>> TIGR00231  small_GTP: small GTP-binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.5   0.1   0.00042      0.35       7      27 ..      31      51 ..      26      68 .. 0.85
   2 !    8.2   0.3   0.00051      0.42      57     146 ..     123     220 ..      75     237 .. 0.78

  Alignments for each domain:
  == domain 1    score: 8.5 bits;  conditional E-value: 0.00042
   TIGR00231  7 vivGhvdvGKstLlnsllknk 27
                v+ G+ ++GK+tLln +l+ +
  MMETSP1137-20121227|1129_1 31 VLTGFLGSGKTTLLNHILTAT 51
                678999***********9866 PP

  == domain 2    score: 8.2 bits;  conditional E-value: 0.00051
   TIGR00231  57 llDTaGqedfdairrly.vreverslevvdivilvldveeglekqtke....iiheakkkgvpi..ilvvnKiDlkd..dlktkvkslfaklnaepiie 146
                 ++ T G +d +++ +   v ++ +s   +d+++ ++d++ +++  ++e    +++ea  ++v +  ++ +nK Dl++  dl+  +++l++ ++ +pi +
  MMETSP1137-20121227|1129_1 123 VIETTGMADPAPVAQTFfVDDTVKSFARLDGIVTLIDAKHIEQHLDEEkqegVENEAV-EQVAFadRMLLNKTDLVSexDLERVEARLRSINKXAPIQR 220
                 577888888888888776899999***************9986544441111555554.33333236889****************9999999988654 PP

>> TIGR03819  heli_sec_ATPase: helicase/secretion neighborhood ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   0.0   7.7e-06    0.0063     169     217 ..      17      66 ..       5      83 .. 0.73

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 7.7e-06
   TIGR03819 169 elleaivaarlal.lvsGgtGsGkttLLsalLalvaedeRivlvedaael 217
                 e + +  ++r+ + +++G  GsGkttLL+ +L++ + ++  v+ ++  e+
  MMETSP1137-20121227|1129_1  17 EXMXDNXDRRVPVtVLTGFLGSGKTTLLNHILTATHGKKLAVIENEFGEV 66 
                 55555556666651568999************999887766655555565 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (432 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       232  (0.0565578); expected 82.0 (0.02)
Passed bias filter:                      131  (0.0319356); expected 82.0 (0.02)
Passed Vit filter:                        36  (0.00877621); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.42u 0.18s 00:00:00.60 Elapsed: 00:00:00.39
# Mc/sec: 1462.03
//
Query:       MMETSP1137-20121227|1130_1  [L=241]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (241 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        63  (0.0153584); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.17s 00:00:00.39 Elapsed: 00:00:00.26
# Mc/sec: 1223.44
//
Query:       MMETSP1137-20121227|1131_1  [L=432]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (432 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        66  (0.0160897); expected 82.0 (0.02)
Passed bias filter:                       34  (0.00828864); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.16s 00:00:00.46 Elapsed: 00:00:00.42
# Mc/sec: 1357.60
//
Query:       MMETSP1137-20121227|1132_1  [L=293]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (293 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        95  (0.0231594); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.13s 00:00:00.37 Elapsed: 00:00:00.37
# Mc/sec: 1045.21
//
Query:       MMETSP1137-20121227|1133_1  [L=326]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (326 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       172  (0.0419308); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.18s 00:00:00.44 Elapsed: 00:00:00.33
# Mc/sec: 1303.89
//
Query:       MMETSP1137-20121227|1134_1  [L=208]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (208 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       124  (0.0302292); expected 82.0 (0.02)
Passed bias filter:                      115  (0.0280351); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.12s 00:00:00.32 Elapsed: 00:00:00.33
# Mc/sec: 831.93
//
Query:       MMETSP1137-20121227|1135_1  [L=285]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (285 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        58  (0.0141394); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.14s 00:00:00.38 Elapsed: 00:00:00.35
# Mc/sec: 1074.77
//
Query:       MMETSP1137-20121227|1137_1  [L=413]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (413 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       147  (0.0358362); expected 82.0 (0.02)
Passed bias filter:                      140  (0.0341297); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.18s 00:00:00.50 Elapsed: 00:00:00.65
# Mc/sec: 838.64
//
Query:       MMETSP1137-20121227|1138_1  [L=713]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (713 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       103  (0.0251097); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.18s 00:00:00.61 Elapsed: 00:00:00.57
# Mc/sec: 1622.56
//
Query:       MMETSP1137-20121227|1139_1  [L=311]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.7e-17   60.3   0.4      4e-16   57.0   0.3    2.0  1  TIGR00168 infC: translation initiation factor IF-3


Domain annotation for each model (and alignments):
>> TIGR00168  infC: translation initiation factor IF-3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.0   0.3   9.7e-20     4e-16       5     141 ..     130     282 ..     127     304 .. 0.74

  Alignments for each domain:
  == domain 1    score: 57.0 bits;  conditional E-value: 9.7e-20
   TIGR00168   5 irakevrlidenGeqlgivsleealkiAeeaglDLvlisanakpPvckildygkykyekekk.........kkeakKkqkviqv......KEvklkpkidehDlevklkqakrflekgdkvKvtvrfrGRelah..kelgeevldrvkekvaev 141
                 +  ke+rl++++G +++i+  eeal+iA +++l Lv++++ a+pP  k+++  k   +k++          ++ a+  q+ +q+      K+v++  k  e+Dl +kl+qak+fl kg  vK+tv +  R         ++  ++r+ ++ +e 
  MMETSP1137-20121227|1139_1 130 LGLKELRLVGNDG-TQQILGPEEALEIASKKNLRLVEVGPMATPPTWKLMEQPKEPPKKKRDspspkadslSRAAQNIQRRAQMgkpprqKDVRVMDKCHENDLRIKLQQAKQFLSKGIVVKITVLASKRTDVDdpRARANATIQRFIDETQET 282
                 5789*********.889***********************************998777776522222222235566667777755555559**********************************99888644311233444555555555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (311 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        97  (0.023647); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.25u 0.17s 00:00:00.42 Elapsed: 00:00:00.37
# Mc/sec: 1109.42
//
Query:       MMETSP1137-20121227|1140_1  [L=107]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0001   19.3   0.0     0.0001   19.3   0.0    1.1  1  TIGR00225 prc: C-terminal processing peptidase
     0.0022   14.8   0.0     0.0022   14.8   0.0    1.1  1  TIGR02037 degP_htrA_DO: peptidase Do
  ------ inclusion threshold ------
      0.014   12.1   0.0      0.014   12.1   0.0    1.1  1  TIGR00054 TIGR00054: RIP metalloprotease RseP
      0.038    9.7   0.0      0.044    9.5   0.0    1.0  1  TIGR03900 prc_long_Delta: putative carboxyl-terminal-processing protease, deltaproteobacterial


Domain annotation for each model (and alignments):
>> TIGR00225  prc: C-terminal processing peptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.0   9.7e-08    0.0001      43      92 ..      10      61 ..       1      99 [. 0.78

  Alignments for each domain:
  == domain 1    score: 19.3 bits;  conditional E-value: 9.7e-08
   TIGR00225 43 settsgeleGiGiqvqmedd..eivivsplegsPAekagikpgDkIikvdgk 92
                s +++   +G Gi   m+d+  +i ++++ egs A+kag++ gDk+++v + 
  MMETSP1137-20121227|1140_1 10 SINVHKGQSGYGIYFAMKDGggDIFVTKVDEGSXAQKAGVQIGDKLVAVSDL 61
                556677789**********999**************************9865 PP

>> TIGR02037  degP_htrA_DO: peptidase Do
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   2.1e-06    0.0022     261     289 ..      33      61 ..      11      96 .. 0.78

  Alignments for each domain:
  == domain 1    score: 14.8 bits;  conditional E-value: 2.1e-06
   TIGR02037 261 alvaevlkgspAekaGlkaGDvilkvngk 289
                  +v++v +gs A+kaG++ GD +++v + 
  MMETSP1137-20121227|1140_1  33 IFVTKVDEGSXAQKAGVQIGDKLVAVSDL 61 
                 68*******************99988764 PP

>> TIGR00054  TIGR00054: RIP metalloprotease RseP
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   1.4e-05     0.014     203     233 ..      32      62 ..       6      89 .. 0.75

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 1.4e-05
   TIGR00054 203 elvlsdvvdnspaekaGlkeGDkilkidgek 233
                 ++ +++v + s a+kaG+++GDk++ + + +
  MMETSP1137-20121227|1140_1  32 DIFVTKVDEGSXAQKAGVQIGDKLVAVSDLN 62 
                 67789999*****************998443 PP

>> TIGR03900  prc_long_Delta: putative carboxyl-terminal-processing protease, deltaproteobacterial
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   0.0   4.3e-05     0.044     140     180 ..      18      60 ..       4      68 .. 0.85

  Alignments for each domain:
  == domain 1    score: 9.5 bits;  conditional E-value: 4.3e-05
   TIGR03900 140 GGlGiviamRdr..kltVlrvlpetPAaraGlkakDrivkide 180
                  G Gi  am+d+   + V +v  ++ A++aG++  D++v++ +
  MMETSP1137-20121227|1140_1  18 SGYGIYFAMKDGggDIFVTKVDEGSXAQKAGVQIGDKLVAVSD 60 
                 5899999**995448***********************99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (107 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        78  (0.0190151); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.18u 0.16s 00:00:00.34 Elapsed: 00:00:00.35
# Mc/sec: 403.51
//
Query:       MMETSP1137-20121227|1141_1  [L=1184]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0025   15.3   0.0     0.0057   14.2   0.0    1.5  1  TIGR01189 ccmA: heme ABC exporter, ATP-binding protein CcmA
     0.0084   13.4   0.5       0.02   12.2   0.2    1.7  1  TIGR03608 L_ocin_972_ABC: putative bacteriocin export ABC transporter, lactococcin 972 group
  ------ inclusion threshold ------
      0.031   11.5   0.0      0.057   10.7   0.0    1.3  1  TIGR03410 urea_trans_UrtE: urea ABC transporter, ATP-binding protein UrtE


Domain annotation for each model (and alignments):
>> TIGR01189  ccmA: heme ABC exporter, ATP-binding protein CcmA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.0   4.1e-06    0.0057      24      54 ..     265     295 ..     252     312 .. 0.84

  Alignments for each domain:
  == domain 1    score: 14.2 bits;  conditional E-value: 4.1e-06
   TIGR01189  24 aaGealvveGpnGiGKttLLRilaGLlkpes 54 
                 a+G  + v+G+nG+GKt+LL ++  L+ +++
  MMETSP1137-20121227|1141_1 265 ASGLHVGVVGENGTGKTSLLNTVCYLSSTTT 295
                 5788999***************999987765 PP

>> TIGR03608  L_ocin_972_ABC: putative bacteriocin export ABC transporter, lactococcin 972 group
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.2   0.2   1.4e-05      0.02      23      55 ..     266     298 ..     241     312 .. 0.83

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 1.4e-05
   TIGR03608  23 kGelvaivGesGsGKstlLnilgllekkdsgkv 55 
                 +G  v +vGe G+GK+ lLn +  l ++ + ++
  MMETSP1137-20121227|1141_1 266 SGLHVGVVGENGTGKTSLLNTVCYLSSTTTKEY 298
                 588899****************99998876655 PP

>> TIGR03410  urea_trans_UrtE: urea ABC transporter, ATP-binding protein UrtE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   4.1e-05     0.057      28      64 ..     269     305 ..     262     316 .. 0.77

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 4.1e-05
   TIGR03410  28 vvavlGrngvGkttllkalvgllkvksGeielegedi 64 
                  v v+G ng+Gkt+ll +++ l ++++ e + + +++
  MMETSP1137-20121227|1141_1 269 HVGVVGENGTGKTSLLNTVCYLSSTTTKEYKRDVAKL 305
                 5789***************988888776666555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1184 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       224  (0.0546075); expected 82.0 (0.02)
Passed bias filter:                      160  (0.0390054); expected 82.0 (0.02)
Passed Vit filter:                        44  (0.0107265); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.74u 0.34s 00:00:01.08 Elapsed: 00:00:00.79
# Mc/sec: 1978.17
//
Query:       MMETSP1137-20121227|1142_1  [L=254]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.045   11.7   5.8       0.58    8.1   0.9    2.9  2  TIGR01403 fliQ_rel_III: type III secretion protein, HrpO family


Domain annotation for each model (and alignments):
>> TIGR01403  fliQ_rel_III: type III secretion protein, HrpO family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   0.9   0.00014      0.58      21      53 ..      27      59 ..      17      71 .. 0.87
   2 ?    4.7   0.1    0.0016       6.7       4      31 ..     106     133 ..     103     137 .. 0.88

  Alignments for each domain:
  == domain 1    score: 8.1 bits;  conditional E-value: 0.00014
   TIGR01403 21 vlvaaivGvlvsllqavtqlqdqtlsfaiKlia 53
                 +va ++Gv ++ +  ++ql +qt+ f   l+ 
  MMETSP1137-20121227|1142_1 27 AVVARVIGVCLAAFGFAVQLIQQTIDFPNALVL 59
                579************************877776 PP

  == domain 2    score: 4.7 bits;  conditional E-value: 0.0016
   TIGR01403   4 elvkqalllvlllSlppvlvaaivGvlv 31 
                 e++ +a +l+ +  +  vlva ++G+l+
  MMETSP1137-20121227|1142_1 106 EVCAHAPWLLCVRGAGHVLVAEVIGLLL 133
                 67888999999999***********986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (254 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       159  (0.0387616); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.18u 0.18s 00:00:00.36 Elapsed: 00:00:00.36
# Mc/sec: 931.26
//
Query:       MMETSP1137-20121227|1144_1  [L=89]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (89 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        24  (0.0058508); expected 82.0 (0.02)
Passed bias filter:                       23  (0.00560702); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.19s 00:00:00.30 Elapsed: 00:00:00.32
# Mc/sec: 367.09
//
Query:       MMETSP1137-20121227|1146_1  [L=433]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (433 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       116  (0.0282789); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.16s 00:00:00.47 Elapsed: 00:00:00.82
# Mc/sec: 696.97
//
Query:       MMETSP1137-20121227|1149_1  [L=265]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.048   11.0   0.1      0.071   10.5   0.1    1.2  1  TIGR02056 ChlG: chlorophyll synthase ChlG


Domain annotation for each model (and alignments):
>> TIGR02056  ChlG: chlorophyll synthase ChlG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.1   1.7e-05     0.071      12      83 ..     181     260 ..     174     264 .. 0.74

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 1.7e-05
   TIGR02056  12 etskwkirlqltk.p...vtwiplvwgv...vcgaaasgnytws.ledvlkailcmllsgplltgytqtlndfydreida 83 
                   s+wk+r + ++ p   +t  p   gv   vc         w+   +     l+m+ s p   g+ q l+ fy   +d+
  MMETSP1137-20121227|1149_1 181 ACSIWKLRGECLRnPkhmLTACPATCGVcttVCEDKNPDCQLWAtTGECHENTLAMIQSCPQSCGFCQQLEKFYRHALDS 260
                 57899999764431333378889988873335666666666786156888999*********************999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (265 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       144  (0.0351048); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.24u 0.15s 00:00:00.39 Elapsed: 00:00:00.36
# Mc/sec: 971.59
//
Query:       MMETSP1137-20121227|1150_1  [L=217]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (217 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        40  (0.00975134); expected 82.0 (0.02)
Passed bias filter:                       31  (0.00755729); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.17s 00:00:00.34 Elapsed: 00:00:00.30
# Mc/sec: 954.72
//
Query:       MMETSP1137-20121227|1151_1  [L=247]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (247 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        76  (0.0185275); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.16s 00:00:00.36 Elapsed: 00:00:00.36
# Mc/sec: 905.59
//
Query:       MMETSP1137-20121227|1152_1  [L=320]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0012   15.7   0.7      0.003   14.4   0.0    1.9  2  TIGR01386 cztS_silS_copS: heavy metal sensor kinase


Domain annotation for each model (and alignments):
>> TIGR01386  cztS_silS_copS: heavy metal sensor kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.0   7.3e-07     0.003     237     261 ..      93     117 ..      87     134 .. 0.91
   2 ?   -0.6   0.1     0.027   1.1e+02     121     147 ..     181     207 ..     120     278 .. 0.49

  Alignments for each domain:
  == domain 1    score: 14.4 bits;  conditional E-value: 7.3e-07
   TIGR01386 237 afqrlsqFsadlAHelRtPltnLlt 261
                  f+ l+ F + + H+lRtPl  L+ 
  MMETSP1137-20121227|1152_1  93 MFRSLQTFTQSIGHDLRTPLQALMF 117
                 6999*******************96 PP

  == domain 2    score: -0.6 bits;  conditional E-value: 0.027
   TIGR01386 121 akleksriilasvaallegkkrrvtil 147
                 + +e + +   +++++++++ +r  + 
  MMETSP1137-20121227|1152_1 181 NRSELNPAADDDDGPSEAMEMSRKLLR 207
                 222222222222233333333322222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (320 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       158  (0.0385178); expected 82.0 (0.02)
Passed bias filter:                      104  (0.0253535); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.30u 0.18s 00:00:00.48 Elapsed: 00:00:00.41
# Mc/sec: 1030.16
//
Query:       MMETSP1137-20121227|1153_1  [L=240]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.3e-34  117.6   0.0    2.7e-34  117.3   0.0    1.0  1  TIGR01130 ER_PDI_fam: protein disulfide isomerases
    3.8e-31  105.4   0.0    5.5e-31  104.8   0.0    1.2  1  TIGR01126 pdi_dom: protein disulfide-isomerase domain
    6.8e-18   62.6   0.0    9.8e-18   62.1   0.0    1.2  1  TIGR01068 thioredoxin: thioredoxin
    1.1e-08   31.9   0.0    1.9e-08   31.2   0.0    1.3  1  TIGR00424 APS_reduc: 5'-adenylylsulfate reductase, thioredoxin-independent
     0.0044   14.5   0.0      0.007   13.9   0.0    1.3  1  TIGR02738 TrbB: type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB
     0.0051   14.3   0.0     0.0073   13.8   0.0    1.2  1  TIGR00385 dsbE: periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily
  ------ inclusion threshold ------
      0.024   12.6   0.0       0.04   11.8   0.0    1.3  1  TIGR00411 redox_disulf_1: redox-active disulfide protein 1
      0.026   12.1   0.0      0.035   11.7   0.0    1.1  1  TIGR02187 GlrX_arch: glutaredoxin-like domain protein


Domain annotation for each model (and alignments):
>> TIGR01130  ER_PDI_fam: protein disulfide isomerases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  117.3   0.0   5.3e-37   2.7e-34       2     118 ..      18     133 ..      17     147 .. 0.91

  Alignments for each domain:
  == domain 1    score: 117.3 bits;  conditional E-value: 5.3e-37
   TIGR01130   2 evleltkenfddlikenelvLveFYAPWCGHCksLaPeYekAAeelkk.kspkvklakvDateekelaqkygvsGyPtLkifrngesssdYnGpReaegivkylkkqsgPaskeletv 118
                 ev+el ++n++ +  ++ + Lv+FYAPWCGHCk+LaP Ye+ A+  +  +s +v++akvD+t+e++l + ++v+GyPt+ ++++g+++  ++G R+ +g++ +++k++ P +   ++v
  MMETSP1137-20121227|1153_1  18 EVIELRSSNWHRT--KHGYWLVKFYAPWCGHCKKLAPVYEEVATFYHRtQSXSVSVAKVDGTQESSLLTTFDVKGYPTIVLLKDGQRVASFDGKRSFDGLTAFVRKHVDPDAPPTHDV 133
                 899999****995..99**************************9887516679*********************************************************98665555 PP

>> TIGR01126  pdi_dom: protein disulfide-isomerase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  104.8   0.0   1.1e-33   5.5e-31      14     104 ..      32     122 ..      24     123 .. 0.92

  Alignments for each domain:
  == domain 1    score: 104.8 bits;  conditional E-value: 1.1e-33
   TIGR01126  14 nkdvlvefyaPWCGhCkklaPeyeklakelkke.eekvkiakvdataekelaskfkvsgfPtlkffkkgkkepvdyeGeReaeelvefveek 104
                 +  +lv+fyaPWCGhCkklaP+ye++a+ ++++ + +v++akvd t+e++l ++f+v+g+Pt+ ++k+g++   +++G+R+ + l++fv+++
  MMETSP1137-20121227|1153_1  32 HGYWLVKFYAPWCGHCKKLAPVYEEVATFYHRTqSXSVSVAKVDGTQESSLLTTFDVKGYPTIVLLKDGQR-VASFDGKRSFDGLTAFVRKH 122
                 5679************************998751568********************************96.99***************998 PP

>> TIGR01068  thioredoxin: thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.1   0.0   1.9e-20   9.8e-18      15     100 ..      33     122 ..      22     123 .. 0.86

  Alignments for each domain:
  == domain 1    score: 62.1 bits;  conditional E-value: 1.9e-20
   TIGR01068  15 klvlvDfwAeWCgpCkmlaPvleelakele....ekvkvvKlnvdeeqeiaakygirsiPtlllfkngkevkrvvGakpkaalkeliekl 100
                    lv f+A+WCg Ck laPv ee+a+ ++     +v+v+K++  +e+++ ++++++  Pt++l+k+g++v++  G  + + l+ +++k+
  MMETSP1137-20121227|1153_1  33 GYWLVKFYAPWCGHCKKLAPVYEEVATFYHrtqsXSVSVAKVDGTQESSLLTTFDVKGYPTIVLLKDGQRVASFDGKRSFDGLTAFVRKH 122
                 5679*********************975541111689***************************************99999988888776 PP

>> TIGR00424  APS_reduc: 5'-adenylylsulfate reductase, thioredoxin-independent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.2   0.0   3.8e-11   1.9e-08     371     461 ..      31     120 ..      17     122 .. 0.86

  Alignments for each domain:
  == domain 1    score: 31.2 bits;  conditional E-value: 3.8e-11
   TIGR00424 371 rkeawlvvlyapwcpfcqameasyvelaekla.gsgvkvakfradgdqkefakqelqlgsfptillfpkrssraikypsekrdvdslmsfvn 461
                 ++  wlv +yapwc  c+ +   y e+a      +   v+  + dg q +     ++++ +pti+l+ k+ +r   +   kr  d l++fv 
  MMETSP1137-20121227|1153_1  31 KHGYWLVKFYAPWCGHCKKLAPVYEEVATFYHrTQSXSVSVAKVDGTQESSLLTTFDVKGYPTIVLL-KDGQRVASF-DGKRSFDGLTAFVR 120
                 4567************************9765256778899999********************987.666666655.67999******995 PP

>> TIGR02738  TrbB: type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.0   1.4e-05     0.007      47      90 ..      29      76 ..      10      89 .. 0.73

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 1.4e-05
   TIGR02738 47 vlledyklvlfyqstCpyChqfapvLkqlsqqtg....levlayslDg 90
                 + + y lv fy   C +C++ apv  + +  ++     +v +  +Dg
  MMETSP1137-20121227|1153_1 29 RTKHGYWLVKFYAPWCGHCKKLAPVYEEVATFYHrtqsXSVSVAKVDG 76
                55667899*****************88766443311114555555666 PP

>> TIGR00385  dsbE: periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.0   1.4e-05    0.0073      61      90 ..      30      59 ..      10     107 .. 0.73

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 1.4e-05
   TIGR00385 61 kkgklvLlnvwasWCptCraehplLkelak 90
                +k    L+ ++a WC+ C++  p+ +e+a 
  MMETSP1137-20121227|1153_1 30 TKHGYWLVKFYAPWCGHCKKLAPVYEEVAT 59
                566788******************999985 PP

>> TIGR00411  redox_disulf_1: redox-active disulfide protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   7.9e-05      0.04       6      60 ..      39      97 ..      36     116 .. 0.84

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 7.9e-05
   TIGR00411  6 ftsPtCPyCPkakkvveeva....keegdkvevekinvmedlkkaleyGimavPaivin 60
                f +P C +C k   v eeva    + ++  v v k++  ++      + +++ P+iv+ 
  MMETSP1137-20121227|1153_1 39 FYAPWCGHCKKLAPVYEEVAtfyhRTQSXSVSVAKVDGTQESSLLTTFDVKGYPTIVLL 97
                789********99999999833334677889999999999999999**********975 PP

>> TIGR02187  GlrX_arch: glutaredoxin-like domain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   6.8e-05     0.035      34      89 ..      44     102 ..      30     121 .. 0.85

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 6.8e-05
   TIGR02187  34 CeyCeetkqlleelsevs...dklkleiydldteedkekvekykvervPtvileeegsk 89 
                 C  C+++  + ee++      +  ++++ ++d  ++      + v  +Pt++l ++g++
  MMETSP1137-20121227|1153_1  44 CGHCKKLAPVYEEVATFYhrtQSXSVSVAKVDGTQESSLLTTFDVKGYPTIVLLKDGQR 102
                 88899999888888877666678899999999999999*****************9954 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (240 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        89  (0.0216967); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                         8  (0.00195027); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.24u 0.13s 00:00:00.37 Elapsed: 00:00:00.39
# Mc/sec: 812.24
//
Query:       MMETSP1137-20121227|1154_1  [L=266]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (266 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        86  (0.0209654); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.11s 00:00:00.32 Elapsed: 00:00:00.77
# Mc/sec: 455.96
//
Query:       MMETSP1137-20121227|1155_1  [L=207]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.2e-19   66.2   0.1    7.9e-19   65.8   0.0    1.2  1  TIGR01622 SF-CC1: splicing factor, CC1-like family
    5.3e-13   46.8   0.0    5.3e-13   46.8   0.0    1.1  1  TIGR01628 PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family
    1.6e-12   44.8   5.8    1.9e-12   44.5   4.0    1.0  1  TIGR01645 half-pint: poly-U binding splicing factor, half-pint family
    2.6e-09   35.0   0.1    3.3e-09   34.6   0.0    1.1  1  TIGR01659 sex-lethal: sex-lethal family splicing factor
    4.2e-09   34.3   0.2    2.6e-08   31.6   0.0    1.6  1  TIGR01661 ELAV_HUD_SF: ELAV/HuD family splicing factor
    4.3e-08   29.9   0.0    4.8e-08   29.8   0.0    1.2  1  TIGR01642 U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor
    5.5e-08   29.9   0.0    5.5e-08   29.9   0.0    1.8  2  TIGR01648 hnRNP-R-Q: hnRNP-R, Q splicing factor family


Domain annotation for each model (and alignments):
>> TIGR01622  SF-CC1: splicing factor, CC1-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.8   0.0   1.4e-21   7.9e-19     219     298 ..       9      88 ..       2     160 .. 0.84

  Alignments for each domain:
  == domain 1    score: 65.8 bits;  conditional E-value: 1.4e-21
   TIGR01622 219 dlkLYvGnlhfnitEqeLrqiFepFGeielvqlqkDpetGrskGyGFiqFsdaeeakeAleklNGlelAGReikvglasD 298
                  +kL++G+l ++   ++L+  F  FG+i ++ ++ D +t + +G+GFi+F d+  akeA  ++   el GR + v la  
  MMETSP1137-20121227|1155_1   9 GKKLFIGGLSYDTCKEDLKAAFGRFGDITDIHIPIDRDTDKPRGFGFITFADSRDAKEAVAEMHEKELSGRHVSVNLAVP 88 
                 579************************************************************************98644 PP

>> TIGR01628  PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.8   0.0     9e-16   5.3e-13     281     364 ..       5      89 ..       1     155 [. 0.90

  Alignments for each domain:
  == domain 1    score: 46.8 bits;  conditional E-value: 9e-16
   TIGR01628 281 ekaqgvNlYvkNlddtvddekLrelFeefGeitSakvmld.ekekSkgFGFVcfssqeeAnkAvtelhgkilngkPLyvalAqrk 364
                 e + g+ l++  l     +e+L+  F +fG+it  ++ +d +++k +gFGF++f++  +A++Av e+h k l g+ + v+lA   
  MMETSP1137-20121227|1155_1   5 EDTDGKKLFIGGLSYDTCKEDLKAAFGRFGDITDIHIPIDrDTDKPRGFGFITFADSRDAKEAVAEMHEKELSGRHVSVNLAVPA 89 
                 566788999999999999**********************899**************************************9655 PP

>> TIGR01645  half-pint: poly-U binding splicing factor, half-pint family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.5   4.0   3.3e-15   1.9e-12     206     350 ..      15     151 ..       4     165 .. 0.81

  Alignments for each domain:
  == domain 1    score: 44.5 bits;  conditional E-value: 3.3e-15
   TIGR01645 206 asvhpdlseedlksvfeafGeivkcklaraptlrkhkGfGflefenlqsqseaiasmnlfdlGGqllrvGkavtPPdallqPatvsalPaaaavaaaaatakitaaeavagaavlglraqspatassslvtdieakavvssakke 350
                   +  d  +edlk+ f  fG+i + ++  +  + k +GfGf+ f++ +  +ea+a m   +l G+++ v         l+ Pa ++a  aaa +aaaaa a   aa   aga v    a + ++a+ + v +i   +v + a+ +
  MMETSP1137-20121227|1155_1  15 GGLSYDTCKEDLKAAFGRFGDITDIHIPIDRDTDKPRGFGFITFADSRDAKEAVAEMHEKELSGRHVSV--------NLAVPAEKAAGGAAAGMAAAAAPAAAEAASGTAGAIVGIEVATTNMVATLAAVQEIVGVTVATVATAA 151
                 566779999*******************************************************96555........57889999999999999999999999999999998887777777777777777776655554444433 PP

>> TIGR01659  sex-lethal: sex-lethal family splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.6   0.0   5.7e-12   3.3e-09     194     320 ..      10     136 ..       3     144 .. 0.82

  Alignments for each domain:
  == domain 1    score: 34.6 bits;  conditional E-value: 5.7e-12
   TIGR01659 194 tnlyvtnlprtitddqldtifgkygsivqknilrdkltgkprgvafvrfnkreeaqeaisalnnvipeggsqpltvrlaeehgkakaahymsklglikygeygtgnggvaggsaanlpqppafmgan 320
                   l++  l+     ++l++ fg++g i +  i  d+ t kprg  f+ f    +a+ea++ + +    g    + + +  e+    aa  m+   +   +e ++g++g+  g   + +++ a  +a 
  MMETSP1137-20121227|1155_1  10 KKLFIGGLSYDTCKEDLKAAFGRFGDITDIHIPIDRDTDKPRGFGFITFADSRDAKEAVAEMHEKELSGRHVSVNLAVPAEKAAGGAAAGMAAAAAPAAAEAASGTAGAIVGIEVATTNMVATLAAV 136
                 579999999999**************************************************99766666655555555666666788889988888888888888888888777777777766654 PP

>> TIGR01661  ELAV_HUD_SF: ELAV/HuD family splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.6   0.0   4.5e-11   2.6e-08     266     346 ..       6      87 ..       2      93 .. 0.85

  Alignments for each domain:
  == domain 1    score: 31.6 bits;  conditional E-value: 4.5e-11
   TIGR01661 266 dgagycifvynlspdtdeavl.qlfgpfGavqsvkiirdlttnkckGygfvsmtnydeaalailslnGytlgnrvlqvsfkt 346
                 d+ g  +f+  ls dt +  l   fg+fG ++++ i  d +t+k +G+gf++ ++  +a  a++ +   +l++r + v + +
  MMETSP1137-20121227|1155_1   6 DTDGKKLFIGGLSYDTCKEDLkAAFGRFGDITDIHIPIDRDTDKPRGFGFITFADSRDAKEAVAEMHEKELSGRHVSVNLAV 87 
                 6778899999999999665554899999999999999999999999999999999999999999999999999988887655 PP

>> TIGR01642  U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.8   0.0   8.2e-11   4.8e-08     296     378 ..       9      91 ..       2     148 .. 0.87

  Alignments for each domain:
  == domain 1    score: 29.8 bits;  conditional E-value: 8.2e-11
   TIGR01642 296 edklyignLPldlkddqvkeLLesFGdLkaFnliKdlatGlsKGyaFceykdssvtdlAiaaLnGiklgdkkLnvkrAtvgak 378
                  +kl+ig+L +d   + +k     FGd+    +  d++t + +G++F+ + ds +++ A+a +  ++l ++ + v  A+   k
  MMETSP1137-20121227|1155_1   9 GKKLFIGGLSYDTCKEDLKAAFGRFGDITDIHIPIDRDTDKPRGFGFITFADSRDAKEAVAEMHEKELSGRHVSVNLAVPAEK 91 
                 469**********************************************************9999999999999998876555 PP

>> TIGR01648  hnRNP-R-Q: hnRNP-R, Q splicing factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.9   0.0   9.3e-11   5.5e-08      57     136 ..       8      87 ..       3      96 .. 0.90
   2 ?   -1.8   3.0      0.36   2.1e+02     465     521 ..      84     135 ..      79     164 .. 0.57

  Alignments for each domain:
  == domain 1    score: 29.9 bits;  conditional E-value: 9.3e-11
   TIGR01648  57 rGcevfvGkiPrdlyedelvPlfekvGkiyelrlmmdld.GknrGyafvtfcnkeeakeavkelnnyeirpGrllGvcisv 136
                  G  +f+G +  d   ++l   f + G i ++ + +d d  k rG+ f+tf++ ++akeav e+++ e+ +Gr++ v  +v
  MMETSP1137-20121227|1155_1   8 DGKKLFIGGLSYDTCKEDLKAAFGRFGDITDIHIPIDRDtDKPRGFGFITFADSRDAKEAVAEMHEKEL-SGRHVSVNLAV 87 
                 58899********************************651688*************************8.69999998877 PP

  == domain 2    score: -1.8 bits;  conditional E-value: 0.36
   TIGR01648 465 kiiipaavsqdpaiaalappkasaavreakstpaeyqlrtlgvrtsagnqriataga 521
                 ++ +pa     +a+a +a+++a aa + a +t+       +g++  ++n  +at +a
  MMETSP1137-20121227|1155_1  84 NLAVPAEKAAGGAAAGMAAAAAPAAAEAASGTAGA----IVGIEVATTN-MVATLAA 135
                 56778888888888777777777776666666655....2333333333.3333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (207 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       316  (0.0770356); expected 82.0 (0.02)
Passed bias filter:                      138  (0.0336421); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                         8  (0.00195027); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.30u 0.16s 00:00:00.46 Elapsed: 00:00:00.48
# Mc/sec: 569.20
//
Query:       MMETSP1137-20121227|1156_1  [L=195]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (195 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        73  (0.0177962); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.14s 00:00:00.32 Elapsed: 00:00:00.39
# Mc/sec: 659.95
//
Query:       MMETSP1137-20121227|1157_1  [L=454]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.8e-11   40.0   0.0    1.9e-05   21.5   0.0    2.9  3  TIGR00054 TIGR00054: RIP metalloprotease RseP
    5.4e-11   39.9   0.1    1.4e-08   31.9   0.1    2.8  2  TIGR02037 degP_htrA_DO: peptidase Do
    9.1e-11   39.2   0.0    6.1e-07   26.6   0.0    2.1  2  TIGR00225 prc: C-terminal processing peptidase
    4.8e-06   23.6   0.0      0.023   11.5   0.0    3.0  3  TIGR02860 spore_IV_B: stage IV sporulation protein B
      9e-05   19.6   0.0      0.094    9.6   0.0    2.4  3  TIGR02038 protease_degS: periplasmic serine peptidase DegS
    0.00031   18.2   0.0      0.054   10.9   0.0    2.9  3  TIGR01713 typeII_sec_gspC: general secretion pathway protein C
     0.0053   12.5   0.0      0.013   11.3   0.0    1.5  2  TIGR03900 prc_long_Delta: putative carboxyl-terminal-processing protease, deltaproteobacterial


Domain annotation for each model (and alignments):
>> TIGR00054  TIGR00054: RIP metalloprotease RseP
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.5   0.0   3.2e-08   1.9e-05     189     259 ..      47     117 ..      19     150 .. 0.78
   2 !   13.8   0.0   7.4e-06    0.0043     199     271 ..     161     232 ..     130     249 .. 0.79
   3 ?    1.1   0.0     0.052        30     216     255 ..     278     316 ..     258     328 .. 0.81

  Alignments for each domain:
  == domain 1    score: 21.5 bits;  conditional E-value: 3.2e-08
   TIGR00054 189 leeeke.lkelgpkielvlsdvvdnspaekaGlkeGDkilkidgeklkswrdlvklvkenpeksleikveRn 259
                 ++++   l+++g   ++v+  +v+ spa+kaGl++ D+il i+++ ++s++d +   ++  +  ++++v R 
  MMETSP1137-20121227|1157_1  47 FDPDSPlLRDTGSAGKAVVCSLVSGSPAAKAGLEPLDEILAINNVSVRSRQDAIARFRK-ASWPIQLRVCRS 117
                 44553367888889999************************************999998.666677777665 PP

  == domain 2    score: 13.8 bits;  conditional E-value: 7.4e-06
   TIGR00054 199 gpkielvlsdvvdnspaekaGlkeGDkilkidgeklkswrdlvklvkenpeksleikveRngetlslklvpea 271
                 + ++e++++ +v  s+a+ aGl++ D +l ++g+kl+s    +k+++   +  + i++ R  +  +   v ++
  MMETSP1137-20121227|1157_1 161 VAEAEPIVHSIVGGSAAAAAGLQALDLLLAVNGTKLTSTAHAMKVLRA-AKWPIRIAFGRPQSLQHAARVLQR 232
                 456899***********************************9999998.677788888887766666555555 PP

  == domain 3    score: 1.1 bits;  conditional E-value: 0.052
   TIGR00054 216 ekaGlkeGDkilkidgeklkswrdlvklvkenpeksleik 255
                   aGl++G  +l+i+ge   s++    l++e   + +e+ 
  MMETSP1137-20121227|1157_1 278 RAAGLRNGMVVLNINGELCCSREHAERLIRE-ATDRVELL 316
                 4589999999999999999999999999998.66666665 PP

>> TIGR02037  degP_htrA_DO: peptidase Do
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.9   0.1   2.4e-11   1.4e-08     257     414 ..      59     210 ..      39     217 .. 0.78
   2 !    3.6   0.0    0.0094       5.5     258     304 ..     261     309 ..     212     322 .. 0.71

  Alignments for each domain:
  == domain 1    score: 31.9 bits;  conditional E-value: 2.4e-11
   TIGR02037 257 kakGalvaevlkgspAekaGlkaGDvilkvngkkiksaadlreaigtlkpgkkvklkilRkgkekeikvtlkeaeeekasseksekkellglsvadlseeaakkkkskeekkgvvvtkvkkkspaakaglkkgdvilsvnqkevksvaelkkvleeak 414
                 +a  a+v ++++gspA+kaGl+  D il++n+ +++s +d  ++  +  +   ++l+++R     + +  l  ++++  ++   e +  +g++   ++ +++  +  +e     +v+++  +s+aa agl+  d++l+vn ++ +s+a  +kvl++ak
  MMETSP1137-20121227|1157_1  59 SAGKAVVCSLVSGSPAAKAGLEPLDEILAINNVSVRSRQDAIARFRK--ASWPIQLRVCRSLT-AKCNXLLPVHDRHVYEQLAVEVEVKPGAECIGITFDSRPGS-VAE--AEPIVHSIVGGSAAAAAGLQALDLLLAVNGTKLTSTAHAMKVLRAAK 210
                 456699******************************99986555544..345799***99754.445555555555555555457788899***99997665543.233..3458**************************************99766 PP

  == domain 2    score: 3.6 bits;  conditional E-value: 0.0094
   TIGR02037 258 akGalvaevlk.gspA.ekaGlkaGDvilkvngkkiksaadlreaigtl 304
                 a+ ++va +++ +  A + aGl++G v+l++ng+   s ++ ++ i ++
  MMETSP1137-20121227|1157_1 261 AEDVIVAPLIHaHCTAlRAAGLRNGMVVLNINGELCCSREHAERLIREA 309
                 5566666554313334156899999999999999888888877777665 PP

>> TIGR00225  prc: C-terminal processing peptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.6   0.0     1e-09   6.1e-07      62     121 ..      61     117 ..      38     145 .. 0.78
   2 !   11.0   0.0   5.7e-05     0.033      45     107 ..     142     207 ..     128     261 .. 0.76

  Alignments for each domain:
  == domain 1    score: 26.6 bits;  conditional E-value: 1e-09
   TIGR00225  62 deivivsplegsPAekagikpgDkIikvdgksvagmelddavelirGkkgtkvkleiera 121
                 ++ v+ s++ gsPA+kag++p D+I+++++ sv +   +da+++ r k    ++l++ r+
  MMETSP1137-20121227|1157_1  61 GKAVVCSLVSGSPAAKAGLEPLDEILAINNVSVRSR--QDAIARFR-KASWPIQLRVCRS 117
                 4889****************************9987..48888877.5566677766665 PP

  == domain 2    score: 11.0 bits;  conditional E-value: 5.7e-05
   TIGR00225  45 ttsgeleGiGiqvqmedd.....eivivsplegsPAekagikpgDkIikvdgksvagmelddavelir 107
                 +++  +e iGi+  ++ +     e ++ s++ gs A+ ag+++ D +++v+g++ ++    +a++ +r
  MMETSP1137-20121227|1157_1 142 EVKPGAECIGITFDSRPGsvaeaEPIVHSIVGGSAAAAAGLQALDLLLAVNGTKLTST--AHAMKVLR 207
                 4555678999999999998888788999************************966543..35555555 PP

>> TIGR02860  spore_IV_B: stage IV sporulation protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.2   0.0    0.0016      0.94     124     159 ..      72     107 ..      69     122 .. 0.83
   2 !   11.5   0.0     4e-05     0.023      79     158 ..     131     209 ..     116     223 .. 0.77
   3 ?    2.1   0.0     0.027        16     127     170 ..     278     320 ..     272     335 .. 0.82

  Alignments for each domain:
  == domain 1    score: 6.2 bits;  conditional E-value: 0.0016
   TIGR02860 124 sPaeeagiqvGDlilkvngekikeeedvaklineag 159
                 sPa++ag++  D il++n+ ++++ +d    +++a+
  MMETSP1137-20121227|1157_1  72 SPAAKAGLEPLDEILAINNVSVRSRQDAIARFRKAS 107
                 8***********************999888777764 PP

  == domain 2    score: 11.5 bits;  conditional E-value: 4e-05
   TIGR02860  79 kkisvkvlpeikvvpGGqsiGvklntkGvlvvGfsdietekGkiesPaeeagiqvGDlilkvngekikeeedvaklinea 158
                 +++ ++   e++v pG + iG+ ++++   v   + i ++     s a++ag+q  Dl+l+vng+k+ ++ +  k+++ a
  MMETSP1137-20121227|1157_1 131 RHVYEQLAVEVEVKPGAECIGITFDSRPGSVAEAEPIVHSIVGG-SAAAAAGLQALDLLLAVNGTKLTSTAHAMKVLRAA 209
                 34444556699**************9877777777766654444.5899*******************999998887655 PP

  == domain 3    score: 2.1 bits;  conditional E-value: 0.027
   TIGR02860 127 eeagiqvGDlilkvngekikeeedvaklineaggeklkltikRk 170
                 ++ag++ G ++l++nge   + e+ ++li+ea + +++l  k+ 
  MMETSP1137-20121227|1157_1 278 RAAGLRNGMVVLNINGELCCSREHAERLIREATD-RVELLCKKA 320
                 789**************************99864.567766654 PP

>> TIGR02038  protease_degS: periplasmic serine peptidase DegS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.6   0.0   0.00016     0.094     279     318 ..      62     101 ..      40     118 .. 0.78
   2 !    7.4   0.0    0.0008      0.47     281     320 ..     167     206 ..     155     218 .. 0.86
   3 ?   -3.6   0.0       1.8     1e+03     290     315 ..     275     301 ..     233     310 .. 0.68

  Alignments for each domain:
  == domain 1    score: 9.6 bits;  conditional E-value: 0.00016
   TIGR02038 279 givvtevdPngPaaragllvrdvilkldnkevisaeelmd 318
                   vv  +   +Paa+agl + d il ++n +v s+++ + 
  MMETSP1137-20121227|1157_1  62 KAVVCSLVSGSPAAKAGLEPLDEILAINNVSVRSRQDAIA 101
                 45677777889******************99999987654 PP

  == domain 2    score: 7.4 bits;  conditional E-value: 0.0008
   TIGR02038 281 vvtevdPngPaaragllvrdvilkldnkevisaeelmdrv 320
                 +v  +   + aa agl+  d++l +++ + +s+ + m+ +
  MMETSP1137-20121227|1157_1 167 IVHSIVGGSAAAAAGLQALDLLLAVNGTKLTSTAHAMKVL 206
                 5677778899**********************99999866 PP

  == domain 3    score: -3.6 bits;  conditional E-value: 1.8
   TIGR02038 290 Paar.agllvrdvilkldnkevisaee 315
                  a r agl++  v+l+++++   s+e+
  MMETSP1137-20121227|1157_1 275 TALRaAGLRNGMVVLNINGELCCSREH 301
                 444425677777888888877777665 PP

>> TIGR01713  typeII_sec_gspC: general secretion pathway protein C
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.0     0.034        20     206     229 ..      76      99 ..      71     107 .. 0.88
   2 !   10.9   0.0   9.2e-05     0.054     206     234 ..     179     207 ..     171     210 .. 0.89
   3 ?    0.4   0.0      0.15        87     204     236 ..     277     309 ..     272     316 .. 0.83

  Alignments for each domain:
  == domain 1    score: 2.5 bits;  conditional E-value: 0.034
   TIGR01713 206 kvgLqdgDiavalNgldlrdeeea 229
                 k gL + D ++a+N++++r+ ++a
  MMETSP1137-20121227|1157_1  76 KAGLEPLDEILAINNVSVRSRQDA 99 
                 6899999*************9987 PP

  == domain 2    score: 10.9 bits;  conditional E-value: 9.2e-05
   TIGR01713 206 kvgLqdgDiavalNgldlrdeeeakqvlq 234
                   gLq  D+++a+Ng++l++  +a +vl 
  MMETSP1137-20121227|1157_1 179 AAGLQALDLLLAVNGTKLTSTAHAMKVLR 207
                 67***********************9996 PP

  == domain 3    score: 0.4 bits;  conditional E-value: 0.15
   TIGR01713 204 FekvgLqdgDiavalNgldlrdeeeakqvlqsl 236
                  +  gL++g +++ +Ng    + e+a++++   
  MMETSP1137-20121227|1157_1 277 LRAAGLRNGMVVLNINGELCCSREHAERLIREA 309
                 5778*************9999999999988765 PP

>> TIGR03900  prc_long_Delta: putative carboxyl-terminal-processing protease, deltaproteobacterial
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.3   0.0   2.1e-05     0.013     154     209 ..      64     116 ..      59     126 .. 0.80
   2 ?   -2.7   0.0      0.36   2.1e+02     158     196 ..     171     207 ..     162     250 .. 0.65

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 2.1e-05
   TIGR03900 154 tVlrvlpetPAaraGlkakDrivkideestvnmdlndavdrlRGpvdtkvtitvrR 209
                 +V   + ++PAa+aGl+  D+i++i++ s    + +da+ r+R ++  ++ + v R
  MMETSP1137-20121227|1157_1  64 VVCSLVSGSPAAKAGLEPLDEILAINNVSVR--SRQDAIARFR-KASWPIQLRVCR 116
                 6778899*******************99875..6799999999.445566666655 PP

  == domain 2    score: -2.7 bits;  conditional E-value: 0.36
   TIGR03900 158 vlpetPAaraGlkakDrivkideestvnmdlndavdrlR 196
                 ++ ++ Aa aGl+a D +++++   t   + + a++ lR
  MMETSP1137-20121227|1157_1 171 IVGGSAAAAAGLQALDLLLAVNG--TKLTSTAHAMKVLR 207
                 56678899999999999999975..44445556666666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (454 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        81  (0.0197465); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.43u 0.10s 00:00:00.53 Elapsed: 00:00:00.69
# Mc/sec: 868.45
//
Query:       MMETSP1137-20121227|1158_1  [L=578]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (578 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       140  (0.0341297); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.15s 00:00:00.51 Elapsed: 00:00:00.85
# Mc/sec: 897.53
//
Query:       MMETSP1137-20121227|1159_1  [L=188]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.039   11.2   0.0      0.083   10.1   0.0    1.6  1  TIGR02850 spore_sigG: RNA polymerase sigma-G factor


Domain annotation for each model (and alignments):
>> TIGR02850  spore_sigG: RNA polymerase sigma-G factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0     2e-05     0.083     139     168 ..     158     187 ..     146     188 .] 0.90

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 2e-05
   TIGR02850 139 vseiakelevpkeevvfaldaiqdpvslfe 168
                   +iak l+++k evv+a da+ + ++l+e
  MMETSP1137-20121227|1159_1 158 KDQIAKYLDLAKAEVVLARDALSNLITLLE 187
                 579*********************999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (188 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       120  (0.029254); expected 82.0 (0.02)
Passed bias filter:                      111  (0.02706); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.21u 0.14s 00:00:00.35 Elapsed: 00:00:00.32
# Mc/sec: 775.44
//
Query:       MMETSP1137-20121227|1160_1  [L=308]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (308 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        62  (0.0151146); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.16s 00:00:00.41 Elapsed: 00:00:00.30
# Mc/sec: 1355.09
//
Query:       MMETSP1137-20121227|1161_1  [L=110]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (110 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        35  (0.00853242); expected 82.0 (0.02)
Passed bias filter:                       32  (0.00780107); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.12s 00:00:00.27 Elapsed: 00:00:00.26
# Mc/sec: 558.42
//
Query:       MMETSP1137-20121227|1162_1  [L=555]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (555 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        63  (0.0153584); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.15s 00:00:00.52 Elapsed: 00:00:00.37
# Mc/sec: 1979.84
//
Query:       MMETSP1137-20121227|1163_1  [L=263]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (263 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        73  (0.0177962); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.16s 00:00:00.38 Elapsed: 00:00:00.33
# Mc/sec: 1051.91
//
Query:       MMETSP1137-20121227|1164_1  [L=237]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00091   16.9   0.0     0.0019   15.9   0.0    1.5  1  TIGR00231 small_GTP: small GTP-binding protein domain
  ------ inclusion threshold ------
      0.042   10.7   1.2      0.077    9.8   0.2    1.7  2  TIGR02729 Obg_CgtA: Obg family GTPase CgtA


Domain annotation for each model (and alignments):
>> TIGR00231  small_GTP: small GTP-binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   9.1e-07    0.0019      54     141 ..      10      99 ..       3     110 .. 0.60

  Alignments for each domain:
  == domain 1    score: 15.9 bits;  conditional E-value: 9.1e-07
   TIGR00231  54 kvnllDTaGqedf.....dairrlyvreverslevvdivilvldveegl.ekqtkeiiheakkkgvpiilvvnKiDlkddlktkvkslfaklna 141
                  +nl+D +Gqe+f     +  r++ +r+v++++ v+di ++ +  ++++  +   + i+++  k++ i   v K+Dl    +++  ++f + + 
  MMETSP1137-20121227|1164_1  10 VLNLWDCGGQEAFmenyfESQRDHIFRNVQVLIYVFDIESR-ELSKDIEyYASCLQAIRQNS-KSAQIFCLVHKMDLIP--EEQREQVFLQRER 99 
                 79*******99881111133455556666666666666665.33333330222234555555.6788888899999998..6666665555554 PP

>> TIGR02729  Obg_CgtA: Obg family GTPase CgtA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.2   3.8e-05     0.077     232     302 ..      33     101 ..      30     132 .. 0.78
   2 ?   -0.6   0.0     0.054   1.1e+02     274     313 ..     146     185 ..     121     201 .. 0.71

  Alignments for each domain:
  == domain 1    score: 9.8 bits;  conditional E-value: 3.8e-05
   TIGR02729 232 Hier.trvllhlidlseedekdpvedleviekeLkkyseeLaekpelvvlnkidlleeeeleellkelkeel 302
                 Hi r  +vl+++ d+++    +  +d+e   + L++ +++ ++ + + ++ k+dl+ ee+ e++  + ++el
  MMETSP1137-20121227|1164_1  33 HIFRnVQVLIYVFDIESR---ELSKDIEYYASCLQAIRQNSKSAQIFCLVHKMDLIPEEQREQVFLQREREL 101
                 66552689*******999...77888888888888888888899999*********9988887765555544 PP

  == domain 2    score: -0.6 bits;  conditional E-value: 0.054
   TIGR02729 274 kpelvvlnkidlleeeeleellkelkeelekkvlaisalt 313
                  ++l ++  +d+ ++e++++++k++k +++k+  ++++++
  MMETSP1137-20121227|1164_1 146 LDRLCAVCHADVHRHEKVSNIIKQFKLSCSKTQAQFATMQ 185
                 4677888899999999999999999988855544444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (237 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       175  (0.0426621); expected 82.0 (0.02)
Passed bias filter:                      112  (0.0273038); expected 82.0 (0.02)
Passed Vit filter:                        18  (0.0043881); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.26u 0.18s 00:00:00.44 Elapsed: 00:00:00.42
# Mc/sec: 744.80
//
Query:       MMETSP1137-20121227|1165_1  [L=176]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.4e-13   46.9   0.2    8.2e-13   46.3   0.1    1.2  1  TIGR01068 thioredoxin: thioredoxin
      1e-11   42.9   0.2    1.5e-11   42.4   0.1    1.2  1  TIGR01126 pdi_dom: protein disulfide-isomerase domain
    7.7e-09   33.4   0.2    9.6e-09   33.1   0.1    1.1  1  TIGR01130 ER_PDI_fam: protein disulfide isomerases
    4.2e-07   27.6   0.0    5.2e-07   27.3   0.0    1.2  1  TIGR00385 dsbE: periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily
    0.00015   18.4   0.1     0.0002   17.9   0.1    1.1  1  TIGR00424 APS_reduc: 5'-adenylylsulfate reductase, thioredoxin-independent
  ------ inclusion threshold ------
      0.039   12.1   0.3        2.6    6.2   0.0    2.3  2  TIGR00412 redox_disulf_2: redox-active disulfide protein 2


Domain annotation for each model (and alignments):
>> TIGR01068  thioredoxin: thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.3   0.1   1.2e-15   8.2e-13       8      97 ..      65     155 ..      57     158 .. 0.80

  Alignments for each domain:
  == domain 1    score: 46.3 bits;  conditional E-value: 1.2e-15
   TIGR01068   8 etvassdklvlvDfwAeWCgpCkmlaPvleelakeleekvkvvKlnvdeeqeiaakygirsiPtlllfkngk..evkrvvGakpkaalkeli 97 
                 e+ ++++++v++  +A+WC +Ck++aP  + +a++   +v+++ +  d+++++ ++ gi+ +P + ++  gk  +   + G  + ++l+e +
  MMETSP1137-20121227|1165_1  65 EEAKRENQVVVIKVYASWCRACKAMAPKYQRIAEDWP-DVEFCDILFDNNKNLCKSLGIKVLPYVEIIAGGKgkVEGFSCGPSKVSQLQEKL 155
                 34556678*************************7777.7************************98777655410555667777777777665 PP

>> TIGR01126  pdi_dom: protein disulfide-isomerase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.4   0.1   2.2e-14   1.5e-11      11      96 ..      68     150 ..      58     158 .. 0.84

  Alignments for each domain:
  == domain 1    score: 42.4 bits;  conditional E-value: 2.2e-14
   TIGR01126  11 ldenkdvlvefyaPWCGhCkklaPeyeklakelkkeeekvkiakvdataekelaskfkvsgfPtlkffkkgkkepvdye.GeReaee 96 
                 + en++v+++ ya WC  Ck++aP+y+++a+++     +v+  ++  +++k+l+++++++  P ++++  gk + + ++ G  + ++
  MMETSP1137-20121227|1165_1  68 KRENQVVVIKVYASWCRACKAMAPKYQRIAEDWP----DVEFCDILFDNNKNLCKSLGIKVLPYVEIIAGGKGKVEGFScGPSKVSQ 150
                 448999*************************998....599*****************************99988877634445555 PP

>> TIGR01130  ER_PDI_fam: protein disulfide isomerases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.1   0.1   1.4e-11   9.6e-09      12      87 ..      65     137 ..      56     151 .. 0.83

  Alignments for each domain:
  == domain 1    score: 33.1 bits;  conditional E-value: 1.4e-11
   TIGR01130  12 ddlikenelvLveFYAPWCGHCksLaPeYekAAeelkkkspkvklakvDateekelaqkygvsGyPtLkifrnge.s 87 
                 +++ +en++v+++ YA WC  Ck++aP+Y++ A    ++ p+v+   +   ++k+l++  g++  P + i+  g+ +
  MMETSP1137-20121227|1165_1  65 EEAKRENQVVVIKVYASWCRACKAMAPKYQRIA----EDWPDVEFCDILFDNNKNLCKSLGIKVLPYVEIIAGGKgK 137
                 566678999999999999999999999998755....6788999999999999999999999999999999887744 PP

>> TIGR00385  dsbE: periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.3   0.0   7.6e-10   5.2e-07      47     129 ..      56     138 ..       8     161 .. 0.68

  Alignments for each domain:
  == domain 1    score: 27.3 bits;  conditional E-value: 7.6e-10
   TIGR00385  47 elkekvqlltaevlkkgklvLlnvwasWCptCraehplLkelakeglrivgvd.ykDesqkalkfLkelGnPyqlvlaDekGkl 129
                 + k+  ++  +e+ ++ ++v++ v+asWC  C+a  p  +++a++   +   d + D++++  k L+    Py  ++a +kGk+
  MMETSP1137-20121227|1165_1  56 DEKA-YNAKIEEAKRENQVVVIKVYASWCRACKAMAPKYQRIAEDWPDVEFCDiLFDNNKNLCKSLGIKVLPYVEIIAGGKGKV 138
                 2222.2333336778889**************************9856655562458888999999999999999999999987 PP

>> TIGR00424  APS_reduc: 5'-adenylylsulfate reductase, thioredoxin-independent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.1   2.9e-07    0.0002     366     400 ..      63      99 ..      40     104 .. 0.78

  Alignments for each domain:
  == domain 1    score: 17.9 bits;  conditional E-value: 2.9e-07
   TIGR00424 366 lkleerkeawlvv..lyapwcpfcqameasyvelaek 400
                    e ++e  +vv  +ya wc+ c+am   y+ +ae 
  MMETSP1137-20121227|1165_1  63 KIEEAKRENQVVVikVYASWCRACKAMAPKYQRIAED 99 
                 4446678888887346****************99985 PP

>> TIGR00412  redox_disulf_2: redox-active disulfide protein 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   0.0    0.0039       2.6       2      24 ..      74      96 ..      73     105 .. 0.80
   2 ?    3.5   0.0     0.026        18      14      32 ..     106     124 ..     101     131 .. 0.89

  Alignments for each domain:
  == domain 1    score: 6.2 bits;  conditional E-value: 0.0039
   TIGR00412  2 vkikivGtGCakCkatfenvkka 24
                v+ik++ + C  Cka+    +++
  MMETSP1137-20121227|1165_1 74 VVIKVYASWCRACKAMAPKYQRI 96
                89************987666655 PP

  == domain 2    score: 3.5 bits;  conditional E-value: 0.026
   TIGR00412  14 CkatfenvkkaveelGiDa 32 
                 C+ +f+n k+  + lGi +
  MMETSP1137-20121227|1165_1 106 CDILFDNNKNLCKSLGIKV 124
                 99**************976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (176 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       155  (0.0377864); expected 82.0 (0.02)
Passed bias filter:                      139  (0.0338859); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.23u 0.12s 00:00:00.35 Elapsed: 00:00:00.35
# Mc/sec: 663.72
//
Query:       MMETSP1137-20121227|1166_1  [L=425]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (425 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        77  (0.0187713); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.14s 00:00:00.44 Elapsed: 00:00:00.49
# Mc/sec: 1144.80
//
Query:       MMETSP1137-20121227|1167_1  [L=254]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (254 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        32  (0.00780107); expected 82.0 (0.02)
Passed bias filter:                       30  (0.00731351); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.13s 00:00:00.35 Elapsed: 00:00:00.36
# Mc/sec: 931.26
//
Query:       MMETSP1137-20121227|1169_1  [L=202]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (202 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       118  (0.0287665); expected 82.0 (0.02)
Passed bias filter:                       99  (0.0241346); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.16s 00:00:00.36 Elapsed: 00:00:00.33
# Mc/sec: 807.93
//
Query:       MMETSP1137-20121227|1170_1  [L=427]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.4e-18   62.6   0.0    4.1e-17   59.9   0.0    2.1  1  TIGR00614 recQ_fam: ATP-dependent DNA helicase, RecQ family
    1.1e-13   48.4   0.0    4.7e-09   33.0   0.0    2.3  2  TIGR01389 recQ: ATP-dependent DNA helicase RecQ
    5.3e-10   35.5   0.0    7.1e-10   35.0   0.0    1.1  1  TIGR04121 DEXH_lig_assoc: DEXH box helicase, DNA ligase-associated
    1.3e-06   24.8   0.1    1.6e-05   21.2   0.0    2.5  3  TIGR03817 DECH_helic: helicase/secretion neighborhood putative DEAH-box helicase
     0.0032   14.5   0.0     0.0057   13.6   0.0    1.4  1  TIGR01587 cas3_core: CRISPR-associated helicase Cas3
     0.0084   12.9   0.0      0.062   10.1   0.0    2.0  2  TIGR04095 dnd_restrict_1: DNA phosphorothioation system restriction enzyme
  ------ inclusion threshold ------
      0.011   12.2   0.0       0.65    6.4   0.0    2.2  2  TIGR00643 recG: ATP-dependent DNA helicase RecG


Domain annotation for each model (and alignments):
>> TIGR00614  recQ_fam: ATP-dependent DNA helicase, RecQ family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.9   0.0     7e-20   4.1e-17      14     349 ..      67     402 ..      57     417 .. 0.76

  Alignments for each domain:
  == domain 1    score: 59.9 bits;  conditional E-value: 7e-20
   TIGR00614  14 pvqlevinavlegrdalvvmatGgGksLCyqlpavvs....dgltlvisPLisLmeDqvlqLkasdisatlLnsaqskeeakevladl.kdgklkllYvtPekvsks.ksllqkle....erkkltliavDeahCisqWGhDfRsdykalgsLkqklPsvpviaLtatasssvreDilklLklkkpq.vtitsfdRpnlkyeveekkskiledllkfiv......kefkgks.GiiYClsrkkveqvaaeLqkkglaaaaYhagleesarkevqkkflrdeiqvvvatvafGmGinkpdvRfvihyslpksiesYYqesGRaGRDglksecvlfyapaDvallrrllveekdek 349
                   q ++  +vl+grd++ +  tG Gk LC+ lpa+v     + l     P i+Lm     +L  +    +   +a+s  +++ v+  + k ++l+ l    e +++   +ll+ ++    + k+ tl+++Dea  + + G  f ++ +++    q+  s   +  +at  ++v+  + +lL  ++p  vt+       +  ++ +++ ++  + +k+++         +g+s  ii+C  ++ +e ++++L+++g ++ + h + ++++r+ v ++f +  + +++a    G          vi y++p + e Y   +GR GR g +  +  + +p+++ +++ l+ + +   
  MMETSP1137-20121227|1170_1  67 AIQSQAWPVVLAGRDMIGLAFTGSGKTLCFALPAIVHinaqEHLQAGDGP-IALMLAPTRELALQIKGECDRFGASSGVRNTAVYGGVpKGPQLRDLQHGVEICIATpGRLLDFMDaaqtNLKRCTLLVLDEADRMLDLG--FEPQLRRIVA--QADASRQTLMWSATWPKEVQGLASELL--RDPLmVTVNDASELRVSETIDQRF-EVCAEEQKHLRflsvlqSVNDGRSkVIIFCEKKRGCELLSKDLRRRGFSCETIHGDKSQQERDWVLQQFKQGSVCLLIA---EGR-------AAVINYDAPSQAEDYVHRVGRTGRAGARGVAFSLLTPNNLYFVKDLVAMLQRSG 402
                 578888899*************************9862221344445556.67888888777644333333445555556799*****99************98765268999888777777899*************99..7888888754..444455566689999999987655544..455403344334444444566666.4444444444444466533444441499*******************************************98766655...554.......379********************************************9977654 PP

>> TIGR01389  recQ: ATP-dependent DNA helicase RecQ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   0.0   9.5e-06    0.0056      18      52 ..      69     103 ..      57     111 .. 0.84
   2 !   33.0   0.0   8.1e-12   4.7e-09     126     361 ..     188     416 ..     159     425 .. 0.74

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 9.5e-06
   TIGR01389  18 qeeiieevldgrdvlavlPtGGGkslCYqvPaLll 52 
                 q +    vl+grd++++  tG Gk lC+ +Pa++ 
  MMETSP1137-20121227|1170_1  69 QSQAWPVVLAGRDMIGLAFTGSGKTLCFALPAIVH 103
                 55566679************************975 PP

  == domain 2    score: 33.0 bits;  conditional E-value: 8.1e-12
   TIGR01389 126 lkiallavDeahCvsqWGhDFRpeYkrlgelaerfpkapvialtatadaevredivekLe......lkdaaefvssfdRenlafsvvkkenkkkqlleylkkere.ks.GiiYassRkkveelaeaLeskgiealaYhaGlskkvRaeaqekFleddvkvvvatvaFGmGidksdvRfvihldlPknlesyyqeaGRaGRDGlkaeaillyseaDlallkrlieeseasedrkqieskkLdell 361
                  + +ll +Dea  +   G  F p+ +r++  a+   ++      at  +ev+    e L+      ++da+e+  s    + +f+v  +e+k+   l+ l++ ++ +s  ii+++ ++  e l + L+ +g++  + h+  s+++R+  +++F +  v +++a               vi +d P + e y   +GR GR G +  a+ l ++++l + k l++  + s ++   + ++L ++ 
  MMETSP1137-20121227|1170_1 188 KRCTLLVLDEADRMLDLG--FEPQLRRIVAQADASRQTL--MWSATWPKEVQGLASELLRdplmvtVNDASELRVSET-IDQRFEVCAEEQKHLRFLSVLQSVNDgRSkVIIFCEKKRGCELLSKDLRRRGFSCETIHGDKSQQERDWVLQQFKQGSVCLLIAEG---R-------AAVINYDAPSQAEDYVHRVGRTGRAGARGVAFSLLTPNNLYFVKDLVAMLQRSGQHVPPDLQRLARMQ 416
                 445677777777777776..6777777777776655544..3455555555543333332221122667776666644.455899998888888888888765554652689*********************************************99999853...2.......359*****************************************999998888888777777777775 PP

>> TIGR04121  DEXH_lig_assoc: DEXH box helicase, DNA ligase-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.0   0.0   1.2e-12   7.1e-10      14     308 ..      65     345 ..      53     392 .. 0.81

  Alignments for each domain:
  == domain 1    score: 35.0 bits;  conditional E-value: 1.2e-12
   TIGR04121  14 prafQkevleaaeegesglliapTGaGKTlavflpslielaakekpk..kglkvlyitPLkaLakdieraleapieelgleirvelrtGDtssserarqrkkppdiLltTpEslaLllsskdaeklfkdlravvvDElHeLlgskRGdlleLaLarLrrlapelrvvglsATvgnleeaaevllgeekeekaklvkakekkalevesllpeeeeklPwaGhlglkaleevleeikkart.tlvFtNtRsqaEllfqaLleaneelaleialhHgsldkeqRekveaalkagklravvc 308
                 p+a Q +++  + +g++ +  a TG+GKTl   lp+++++ a+e+ +  +g  +l ++P + La +i+   ++  +  g+  r     G  ++  + r  ++  +i + Tp  l  l   + a++ +k+++ +v+DE   +l      +l+  +a+      + +++  sAT   ++e++ + ++  +  +  +v+++++ +l+v++ ++++ e      +  l+ + +vl+ +++ r+ +++F+  +  +Ell + L +            Hg  ++++R++v +++k+g++ ++++
  MMETSP1137-20121227|1170_1  65 PTAIQSQAWPVVLAGRDMIGLAFTGSGKTLCFALPAIVHINAQEHLQagDGPIALMLAPTRELALQIKGECDRFGASSGV--RNTAVYGGVPKGPQLRDLQHGVEICIATPGRL--LDFMDAAQTNLKRCTLLVLDEADRMLDLGFEPQLRRIVAQA---DASRQTLMWSATW--PKEVQGLASELLR--DPLMVTVNDASELRVSETIDQRFEVC-AEEQKHLR-FLSVLQSVNDGRSkVIIFCEKKRGCELLSKDLRRRGFS----CETIHGDKSQQERDWVLQQFKQGSVCLLIA 345
                 7889*************************************666555569999***************999998776655..45566799*********************975..5666788999****************986666665555544...4445566679997..4455554444444..567999999*********99955444.34444444.55677777776542799***************998777....34459******************9988877 PP

>> TIGR03817  DECH_helic: helicase/secretion neighborhood putative DEAH-box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.0   2.8e-08   1.6e-05      23     110 ..      51     145 ..      39     200 .. 0.84
   2 ?   -0.2   0.0     0.077        45     102     129 ..     307     334 ..     296     337 .. 0.86
   3 ?   -1.9   0.0      0.27   1.6e+02     350     396 ..     350     394 ..     345     404 .. 0.68

  Alignments for each domain:
  == domain 1    score: 21.2 bits;  conditional E-value: 2.8e-08
   TIGR03817  23 pdvvaaleaaGieapwqhqaraaelahaGehvvvatgtasGkslayllPvlsalaed......pratalylaPtkalaadqlravkelee.rdvr 110
                 + ++a le++G  +p + q +a  +  aG++++  + t sGk+l++ lP++  ++++       +  al laPt+ la      +  +   ++vr
  MMETSP1137-20121227|1170_1  51 EFITADLEHSGFGNPTAIQSQAWPVVLAGRDMIGLAFTGSGKTLCFALPAIVHINAQehlqagDGPIALMLAPTRELALQIKGECDRFGAsSGVR 145
                 4466788999******************************************999995655555999**********987776666665534555 PP

  == domain 2    score: -0.2 bits;  conditional E-value: 0.077
   TIGR03817 102 keleerdvraatydGdtpaeerewirek 129
                 k+l++r++  +t  Gd +++er+w+ ++
  MMETSP1137-20121227|1170_1 307 KDLRRRGFSCETIHGDKSQQERDWVLQQ 334
                 56788999****************9876 PP

  == domain 3    score: -1.9 bits;  conditional E-value: 0.27
   TIGR03817 350 avviaGfPGtvaslwqqaGraGrrgqdalvvlvarddPldtylvhhP 396
                 av+    P +   +  ++Gr+Gr+g + ++  + +  P + y+v+  
  MMETSP1137-20121227|1170_1 350 AVINYDAPSQAEDYVHRVGRTGRAGARGVAFSLLT--PNNLYFVKDL 394
                 666666777788888999******99988765443..3344555555 PP

>> TIGR01587  cas3_core: CRISPR-associated helicase Cas3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   0.0   9.7e-06    0.0057     117     230 ..     181     296 ..     166     344 .. 0.78

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 9.7e-06
   TIGR01587 117 eitlasian.SvliiDEvhayeeytkalllallevlkdvdvkillmsAtlp....kllkeylekielveenealdlkeekrfenqrisliekdkleeisslerllealkkekkvliivN 230
                 + ++ ++++  +l++DE++ + +   +  l  + +++d   + l+ sAt p     l  e+l++  +v  n a +l   + +  qr+ +++++ ++ +++l  +l++++++++ +ii+ 
  MMETSP1137-20121227|1170_1 181 DAAQTNLKRcTLLVLDEADRMLDLGFEPQLRRIVAQADASRQTLMWSATWPkevqGLASELLRDPLMVTVNDASELRVSETI-DQRFEVCAEE-QKHLRFLS-VLQSVNDGRSKVIIFC 296
                 56677776624789*********999999999999****************6665455677788888888888888774455.8999888766.56899999.9999999888777764 PP

>> TIGR04095  dnd_restrict_1: DNA phosphorothioation system restriction enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.1   0.0   0.00011     0.062      24      80 ..      78     141 ..      66     201 .. 0.85
   2 ?    0.5   0.0     0.088        52     311     345 ..     311     345 ..     265     347 .. 0.81

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 0.00011
   TIGR04095  24 ngrGilkma.tGtGktlt.aLalvskl.....aekikslvvvvvvPykhLveqWakeaekFgle 80 
                  gr ++ +a tG+Gktl  aL +++++      +  +  + ++++P ++L+ q   e+++Fg +
  MMETSP1137-20121227|1170_1  78 AGRDMIGLAfTGSGKTLCfALPAIVHInaqehLQAGDGPIALMLAPTRELALQIKGECDRFGAS 141
                 57777777779*****965999999986555444556668899******************975 PP

  == domain 2    score: 0.5 bits;  conditional E-value: 0.088
   TIGR04095 311 elglrvktftaeeskeeReellkqfesgelqalva 345
                 + g++++t    +s++eR+ +l+qf++g++  l+a
  MMETSP1137-20121227|1170_1 311 RRGFSCETIHGDKSQQERDWVLQQFKQGSVCLLIA 345
                 4578899999999**************99988776 PP

>> TIGR00643  recG: ATP-dependent DNA helicase RecG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.0    0.0072       4.2     266     324 ..      89     155 ..      86     230 .. 0.64
   2 ?    6.4   0.0    0.0011      0.65     482     514 ..     313     345 ..     253     352 .. 0.88

  Alignments for each domain:
  == domain 1    score: 3.7 bits;  conditional E-value: 0.0072
   TIGR00643 266 GsGKTvVavlallavies........GyqvalmaPTeiLAeQhyeklrelleplgievalLtgslkk 324
                 GsGKT+  +l ++  i++        G  ++++aPT  LA Q   ++ ++ +  g++ + + g + k
  MMETSP1137-20121227|1170_1  89 GSGKTLCFALPAIVHINAqehlqagdGPIALMLAPTRELALQIKGECDRFGASSGVRNTAVYGGVPK 155
                 9****9877766554432122222224557788*********9999999888877777766666654 PP

  == domain 2    score: 6.4 bits;  conditional E-value: 0.0011
   TIGR00643 482 klnvallhgrlksdekeevleeFrekevdiLva 514
                  ++++ +hg  +++e++ vl++F++++v +L+a
  MMETSP1137-20121227|1170_1 313 GFSCETIHGDKSQQERDWVLQQFKQGSVCLLIA 345
                 578999**********************99997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (427 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       123  (0.0299854); expected 82.0 (0.02)
Passed bias filter:                      114  (0.0277913); expected 82.0 (0.02)
Passed Vit filter:                        29  (0.00706972); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.49u 0.19s 00:00:00.68 Elapsed: 00:00:00.56
# Mc/sec: 988.76
//
Query:       MMETSP1137-20121227|1171_1  [L=234]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.8e-06   25.3   0.1    1.1e-05   22.9   0.1    2.0  1  TIGR03162 ribazole_cobC: alpha-ribazole phosphatase
    2.4e-06   24.9   0.1    5.2e-06   23.9   0.0    1.5  2  TIGR03848 MSMEG_4193: probable phosphomutase, MSMEG_4193 family
    4.3e-06   24.5   0.1    1.5e-05   22.8   0.0    1.9  2  TIGR00249 sixA: phosphohistidine phosphatase SixA


Domain annotation for each model (and alignments):
>> TIGR03162  ribazole_cobC: alpha-ribazole phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.9   0.1   7.7e-09   1.1e-05      20     159 ..      34     182 ..       5     191 .. 0.72

  Alignments for each domain:
  == domain 1    score: 22.9 bits;  conditional E-value: 7.7e-09
   TIGR03162  20 tDvpLaekgeeqaaalrekl...edvkfdavvsSplsRcrelAellaeklk.lpiekddrLrEmdfGdwEgksydeisekypeldawak....dlaharvpgGEsvadfsqRveefleelake.ekenvlivtHgGvirallahllglp 159
                  D pL+  g +qa++ ++++   ++ ++dav++Sp  R+ ++A+ la++++ +pi+ ++   E+     +  + d  +  +pe+d+ ++    d+++ +  g E   ++ +R+  ++eel k+ ++++v+  +H+  + +++a l   +
  MMETSP1137-20121227|1171_1  34 EDPPLSTIGMQQARETAAAIatdNRFRVDAVLCSPYLRTLQTAQPLAQRTSaVPISVEAGVAELGHRPAQIPKADARVGIFPEIDETYEpifgDFVTDAQSGREPRVEYLRRMLFMAEELPKRyHGRTVVCYSHAASVALVAALLNADQ 182
                 5778999999999988888866678899*******************87652788********97665555554444444444443332111144445556677888899999999999999999999999****99988887766554 PP

>> TIGR03848  MSMEG_4193: probable phosphomutase, MSMEG_4193 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.9   0.0   3.8e-09   5.2e-06       1      82 [.       4      97 ..       4     100 .. 0.78
   2 ?   -2.5   0.0      0.46   6.2e+02     148     191 ..     163     204 ..     150     213 .. 0.51

  Alignments for each domain:
  == domain 1    score: 23.9 bits;  conditional E-value: 3.8e-09
   TIGR03848  1 tvllvrhgrstanta....ktLaGrtpGve....LderGreqaaalaerlad...lpiaaivssPlercretveaiaear.glevavderltev 82
                t+++vrhg   + ++    ++  Gr++ v+    L+  G +qa+++a+ +a+    +++a+++sP  r+ +t++++a+++ +++++v+  ++e 
  MMETSP1137-20121227|1171_1  4 TIIIVRHGDRYDYANkaswEQRCGRLHIVAedppLSTIGMQQARETAAAIATdnrFRVDAVLCSPYLRTLQTAQPLAQRTsAVPISVEAGVAEL 97
                899*****765554411115678999888644448899********99997434499*********************9956778899988886 PP

  == domain 2    score: -2.5 bits;  conditional E-value: 0.46
   TIGR03848 148 vavshgDviksvladalGlhlDlfqri.evdPasvsvvrytelrP 191
                 v+ sh+  + +v a    l  D+     +  P+ v ++  t+ +P
  MMETSP1137-20121227|1171_1 163 VCYSHAASVALVAAL---LNADQISSAgVFAPCGVYILTQTAGAP 204
                 455555554443332...222332222023566666666555555 PP

>> TIGR00249  sixA: phosphohistidine phosphatase SixA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.8   0.0   1.1e-08   1.5e-05      19      83 ..      34      99 ..       4     109 .. 0.82
   2 ?   -1.4   0.0       0.3   4.1e+02     100     122 ..     160     182 ..     147     203 .. 0.64

  Alignments for each domain:
  == domain 1    score: 22.8 bits;  conditional E-value: 1.1e-08
   TIGR00249 19 keRqLtkkGkdeaervaqwLkkag.veldrilvSplvRAeqtaeivadaldesklevlegltPlgd 83
                ++ +L++ G+++a+  a+ +   +  ++d +l Sp++R  qta+ +a+   ++ + v  g++ lg+
  MMETSP1137-20121227|1171_1 34 EDPPLSTIGMQQARETAAAIATDNrFRVDAVLCSPYLRTLQTAQPLAQRTSAVPISVEAGVAELGH 99
                56689********9998887655449***********************99998888888887776 PP

  == domain 2    score: -1.4 bits;  conditional E-value: 0.3
   TIGR00249 100 ksvllvsHlPllgelvaeLlsgn 122
                 ++v+  sH   ++ ++a L + +
  MMETSP1137-20121227|1171_1 160 RTVVCYSHAASVALVAALLNADQ 182
                 67777888888887776665543 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (234 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        88  (0.0214529); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.22u 0.13s 00:00:00.35 Elapsed: 00:00:00.41
# Mc/sec: 753.30
//
Query:       MMETSP1137-20121227|1173_1  [L=224]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (224 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        64  (0.0156021); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.16s 00:00:00.37 Elapsed: 00:00:00.63
# Mc/sec: 469.29
//
Query:       MMETSP1137-20121227|1174_1  [L=60]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        67  (0.0163335); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.13s 00:00:00.26 Elapsed: 00:00:00.45
# Mc/sec: 175.99
//
Query:       MMETSP1137-20121227|1175_1  [L=341]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.051   10.8   0.0      0.074   10.3   0.0    1.2  1  TIGR00291 RNA_SBDS: rRNA metabolism protein, SBDS family


Domain annotation for each model (and alignments):
>> TIGR00291  RNA_SBDS: rRNA metabolism protein, SBDS family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   1.8e-05     0.074      47      86 ..     194     233 ..     160     236 .. 0.86

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 1.8e-05
   TIGR00291  47 evFrdaskGekaseeelrkiFgttdvkevakkillkGeiq 86 
                 + F+  + G k  +e l+ iFgt+dv e   ++l +  iq
  MMETSP1137-20121227|1175_1 194 RRFMHPEEGRKLRKERLKCIFGTADVAEPGFNVLTRQLIQ 233
                 5699999*******************99777777766665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (341 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        53  (0.0129205); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.25u 0.19s 00:00:00.44 Elapsed: 00:00:00.46
# Mc/sec: 978.44
//
Query:       MMETSP1137-20121227|1176_1  [L=1842]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1842 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       177  (0.0431497); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 1.02u 0.13s 00:00:01.14 Elapsed: 00:00:00.87
# Mc/sec: 2794.53
//
Query:       MMETSP1137-20121227|1177_1  [L=355]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (355 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        47  (0.0114578); expected 82.0 (0.02)
Passed bias filter:                       35  (0.00853242); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.14s 00:00:00.40 Elapsed: 00:00:00.33
# Mc/sec: 1419.88
//
Query:       MMETSP1137-20121227|1178_1  [L=641]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (641 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       144  (0.0351048); expected 82.0 (0.02)
Passed bias filter:                      106  (0.0258411); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.16s 00:00:00.62 Elapsed: 00:00:00.59
# Mc/sec: 1433.98
//
Query:       MMETSP1137-20121227|1179_1  [L=171]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (171 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        83  (0.020234); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.15s 00:00:00.34 Elapsed: 00:00:00.28
# Mc/sec: 778.28
//
Query:       MMETSP1137-20121227|1180_1  [L=239]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (239 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       235  (0.0572891); expected 82.0 (0.02)
Passed bias filter:                      135  (0.0329108); expected 82.0 (0.02)
Passed Vit filter:                        18  (0.0043881); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.17s 00:00:00.42 Elapsed: 00:00:00.27
# Mc/sec: 1168.35
//
Query:       MMETSP1137-20121227|1181_1  [L=132]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (132 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       105  (0.0255973); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.15s 00:00:00.32 Elapsed: 00:00:00.30
# Mc/sec: 580.75
//
Query:       MMETSP1137-20121227|1182_1  [L=269]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (269 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        49  (0.0119454); expected 82.0 (0.02)
Passed bias filter:                       41  (0.00999512); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.17s 00:00:00.38 Elapsed: 00:00:00.34
# Mc/sec: 1044.27
//
Query:       MMETSP1137-20121227|1184_1  [L=93]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (93 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        91  (0.0221843); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.14s 00:00:00.29 Elapsed: 00:00:00.33
# Mc/sec: 371.97
//
Query:       MMETSP1137-20121227|1184_2  [L=451]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (451 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       185  (0.0451); expected 82.0 (0.02)
Passed bias filter:                      105  (0.0255973); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.13s 00:00:00.46 Elapsed: 00:00:00.49
# Mc/sec: 1214.84
//
Query:       MMETSP1137-20121227|1186_1  [L=194]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (194 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        84  (0.0204778); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.15s 00:00:00.32 Elapsed: 00:00:00.38
# Mc/sec: 673.84
//
Query:       MMETSP1137-20121227|1187_1  [L=164]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.8e-49  163.3  21.0    7.3e-47  155.9  11.6    2.0  2  TIGR01100 V_ATP_synt_C: V-type ATPase, C subunit
  ------ inclusion threshold ------
       0.33    8.6   5.9        3.2    5.5   0.1    2.4  2  TIGR02972 TMAO_torE: trimethylamine N-oxide reductase system, TorE protein
        3.8    5.5  22.4       0.22    9.5   5.0    3.0  2  TIGR01260 ATP_synt_c: ATP synthase F0, C subunit


Domain annotation for each model (and alignments):
>> TIGR01100  V_ATP_synt_C: V-type ATPase, C subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  155.9  11.6   5.4e-50   7.3e-47       1     108 []      11     122 ..      11     122 .. 0.95
   2 !    9.7   0.1   0.00015       0.2      36      66 ..     128     158 ..     123     162 .. 0.83

  Alignments for each domain:
  == domain 1    score: 155.9 bits;  conditional E-value: 5.4e-50
   TIGR01100   1 ffgvlGaaaalvfsalGaayGtaksgvGiaalgvlrpelilksiipvvmaGiiaiyGlvvavliagslkeke....kyslykgfihlgaGlavGlsglaaGlaiGivGdagv 108
                 ffg++Gaa al+f++lGaayGtaksgvG++++gv++p+l++ksiipvvmaG+++iyGl++av+i + +k  e    +ys ++gf+hl+aGla+Glsg+aaG+aiGivGdagv
  MMETSP1137-20121227|1187_1  11 FFGFMGAAVALIFANLGAAYGTAKSGVGVSSMGVMKPDLVMKSIIPVVMAGVLGIYGLIIAVIIGNGVKGPEggkpQYSSFTGFAHLAAGLACGLSGMAAGIAIGIVGDAGV 122
                 9*******************************************************************964322226*********************************98 PP

  == domain 2    score: 9.7 bits;  conditional E-value: 0.00015
   TIGR01100  36 rpelilksiipvvmaGiiaiyGlvvavliag 66 
                 +++l +  ++ +++a  +++yGl+v +++++
  MMETSP1137-20121227|1187_1 128 QAKLYVGMVLILIFAEALGLYGLIVGLILTS 158
                 566777788999**************99976 PP

>> TIGR02972  TMAO_torE: trimethylamine N-oxide reductase system, TorE protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   1.2    0.0036         5      21      39 ..      55      73 ..      50      80 .. 0.86
   2 ?    5.5   0.1    0.0023       3.2      14      39 ..     131     155 ..     118     157 .. 0.69

  Alignments for each domain:
  == domain 1    score: 4.8 bits;  conditional E-value: 0.0036
   TIGR02972 21 FPiLsvavvggYGfivWll 39
                 P+   +v+g YG+i+ ++
  MMETSP1137-20121227|1187_1 55 IPVVMAGVLGIYGLIIAVI 73
                5999999********9665 PP

  == domain 2    score: 5.5 bits;  conditional E-value: 0.0023
   TIGR02972  14 lFIivvLFPiLsvavvggYGfivWll 39 
                 l++ +vL  i +  ++g+YG+iv l+
  MMETSP1137-20121227|1187_1 131 LYVGMVLILIFA-EALGLYGLIVGLI 155
                 555666655543.579*******887 PP

>> TIGR01260  ATP_synt_c: ATP synthase F0, C subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   5.0       0.1   1.4e+02       1      55 [.      24      74 ..      24      75 .. 0.78
   2 ?    9.5   5.0   0.00016      0.22       3      56 ..     108     157 ..     106     158 .. 0.90

  Alignments for each domain:
  == domain 1    score: 0.5 bits;  conditional E-value: 0.1
   TIGR01260  1 AaiGaaiGigilggKflEsaARQPelagllrtkmfivaglvdaipiiavviaLll 55
                A +Gaa+G +  g   + s+     ++++l  k +i + ++   +i+++ ia ++
  MMETSP1137-20121227|1187_1 24 ANLGAAYGTAKSG-VGVSSM---GVMKPDLVMKSIIPVVMAGVLGIYGLIIAVII 74
                5677777777544.334444...469999999*9**999************9985 PP

  == domain 2    score: 9.5 bits;  conditional E-value: 0.00016
   TIGR01260   3 iGaaiGigilggKflEsaARQPelagllrtkmfivaglvdaipiiavviaLlll 56 
                 + a+i igi+g   + ++A Q    ++l + m+++   ++a +++++ ++L+l+
  MMETSP1137-20121227|1187_1 108 MAAGIAIGIVGDAGVRASAQQ----AKLYVGMVLILIFAEALGLYGLIVGLILT 157
                 668999999999999999998....67899**********************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (164 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       254  (0.061921); expected 82.0 (0.02)
Passed bias filter:                      108  (0.0263286); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.20u 0.16s 00:00:00.36 Elapsed: 00:00:00.42
# Mc/sec: 515.39
//
Query:       MMETSP1137-20121227|1188_1  [L=160]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (160 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        83  (0.020234); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.15s 00:00:00.34 Elapsed: 00:00:00.37
# Mc/sec: 570.76
//
Query:       MMETSP1137-20121227|1189_1  [L=172]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.6e-14   49.2   2.7    1.4e-13   48.5   1.9    1.4  1  TIGR00012 L29: ribosomal protein L29
     0.0078   12.6   0.2     0.0087   12.4   0.1    1.0  1  TIGR03319 YmdA_YtgF: conserved hypothetical protein YmdA/YtgF
  ------ inclusion threshold ------
      0.038   12.2   0.7      0.062   11.6   0.5    1.4  1  TIGR02804 ExbD_2: TonB system transport protein ExbD


Domain annotation for each model (and alignments):
>> TIGR00012  L29: ribosomal protein L29
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.5   1.9   1.1e-16   1.4e-13       3      56 .]     113     166 ..     111     166 .. 0.96

  Alignments for each domain:
  == domain 1    score: 48.5 bits;  conditional E-value: 1.1e-16
   TIGR00012   3 rekskeELakklkelKkeLfeLRfqkatgqlekphrIrqvRrdIARllTvlrek 56 
                 +++s+eE+++++ + KkeLfeLR   +t+q +kph++ ++++++A+l+T l+++
  MMETSP1137-20121227|1189_1 113 KNLSDEEIKQEIFNAKKELFELRKNVKTRQQVKPHLFTHTKHRVAQLNTLLSSR 166
                 589***********************************************9975 PP

>> TIGR03319  YmdA_YtgF: conserved hypothetical protein YmdA/YtgF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.4   0.1   6.4e-06    0.0087       5      98 ..      78     169 ..      70     172 .] 0.78

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 6.4e-06
   TIGR03319   5 vvalvvglligyllakkiaekkleeaeeeakkiieeakkeaeakkkealleakeevkklreelekelkerrkelqklekrlkqkeekldrkkek 98 
                 +++l  gl+i ++ a ++  + + +a   a   i++ak+ ++++ k+ + +ak+e+ +lr+++++  + + + ++++++r++q ++ l++++++
  MMETSP1137-20121227|1189_1  78 IAQLSAGLVISTAAAPSV--SVRISAPCMALPSIDDAKNLSDEEIKQEIFNAKKELFELRKNVKTRQQVKPHLFTHTKHRVAQLNTLLSSRQQA 169
                 444444444444444444..33445666778889***************************************************999999854 PP

>> TIGR02804  ExbD_2: TonB system transport protein ExbD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.5   4.5e-05     0.062      34      90 ..     104     160 ..      67     169 .. 0.78

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 4.5e-05
   TIGR02804  34 vdlPkassavaiksdekkllitidadnelylndkkv.sleeleaeiasldkdtkvelk 90 
                 + lP+ + a++++++e k++i  +a++el+   k+v + ++++ ++++ +k+   +l 
  MMETSP1137-20121227|1189_1 104 MALPSIDDAKNLSDEEIKQEI-FNAKKELFELRKNVkTRQQVKPHLFTHTKHRVAQLN 160
                 4699*********88888887.6899999966666626799*********99887775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (172 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       196  (0.0477816); expected 82.0 (0.02)
Passed bias filter:                      125  (0.0304729); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.20u 0.14s 00:00:00.34 Elapsed: 00:00:00.35
# Mc/sec: 648.63
//
Query:       MMETSP1137-20121227|1190_1  [L=874]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (874 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        92  (0.0224281); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.48u 0.17s 00:00:00.65 Elapsed: 00:00:00.50
# Mc/sec: 2307.17
//
Query:       MMETSP1137-20121227|1191_1  [L=442]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (442 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        73  (0.0177962); expected 82.0 (0.02)
Passed bias filter:                       40  (0.00975134); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.16s 00:00:00.44 Elapsed: 00:00:00.40
# Mc/sec: 1458.48
//
Query:       MMETSP1137-20121227|1192_1  [L=204]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (204 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        76  (0.0185275); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.14s 00:00:00.34 Elapsed: 00:00:00.47
# Mc/sec: 572.89
//
Query:       MMETSP1137-20121227|1193_1  [L=551]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.073    8.5  26.4      0.098    8.1  18.3    1.1  1  TIGR02169 SMC_prok_A: chromosome segregation protein SMC
        0.8    5.1  35.1        1.1    4.6  24.3    1.1  1  TIGR02168 SMC_prok_B: chromosome segregation protein SMC


Domain annotation for each model (and alignments):
>> TIGR02169  SMC_prok_A: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1  18.3   4.8e-05     0.098     737     920 ..       6     190 ..       2     213 .. 0.63

  Alignments for each domain:
  == domain 1    score: 8.1 bits;  conditional E-value: 4.8e-05
   TIGR02169 737 kerleeleeklseleeeleekkeelkeleaeieeleeklaklkealedleaelseekieeieeelekleeevsriearleeieaelnklelekelleeeiqelqeeieeleeqkkeiekeieelkak...leele...eeleeleaavreLeeelkdLkkereeleaelrelekkkeeleaeiekkrkrl 920
                 +++l + e+++ ++++el    + + +  + ++++ e  a+++ +l d+ +e +++ i+ i+ee+++     +++ ++++ + ++l+++  + e+l ++  + + e    +  ++ +e+++ ++  +   ++ele   +++ e+e + + L +e++  k + ee+ +  re+e+++  ++ e+e+ r++l
  MMETSP1137-20121227|1193_1   6 SQQLFDAEAEIAAMHQELLTRTDAMSKRTQLVQARLE--ADYRRQLRDMREEXRQDAIDSISEESRQALYASRKLTKQVARLHRDLESSVSRSEQLTNKLSNTKCEL---DISNETLEEQVRNSVLQrrrIAELEeraRQALEAEEEAAALAQEKERYKTQLEEALSRCREMERAQAAAKREAERWRRQL 190
                 5677778888888888888777777665555544433..57999999999999999999999999999999999999999999999999966666666655555444...33444444444444333000333330003334445555555556666666666666666666665555555555544443 PP

>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6  24.3   0.00055       1.1     722     902 ..       8     187 ..       2     204 .. 0.40

  Alignments for each domain:
  == domain 1    score: 4.6 bits;  conditional E-value: 0.00055
   TIGR02168 722 eleelerklselkkelerlekeveqleerlaql..ekeleeleeer.eeleeeleeaeeelkeaeeeieeleaeieqlkeelkalrealseleaeltelkeeaaekeerleslekeiaalekeleeleeqieeleeeiesleaeieeleeeleeleeeleellkekasleealaelreeleels 902
                 +l ++e +++++++el + +    + ++ ++ +   + + +l++ r e  ++++++ +ee  +a   + +l++++++l ++l+++ ++ ++l ++l+++k e++  +e+le+  ++   +++++ elee+++++ e  e+++a  +e e+     +++lee+l + +++e+a a++++e e  +
  MMETSP1137-20121227|1193_1   8 QLFDAEAEIAAMHQELLTRTDAMSKRTQLVQARleADYRRQLRDMReEXRQDAIDSISEESRQALYASRKLTKQVARLHRDLESSVSRSEQLTNKLSNTKCELDISNETLEEQVRNSVLQRRRIAELEERARQALEAEEEAAALAQEKER----YKTQLEEALSRCREMERAQAAAKREAERWR 187
                 333333444444444333333333333322221001122222222202333344455555555555555566666666666666666666666666666666665566666666666666555555555555444333322222222222....222222222222222222222222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (551 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       307  (0.0748415); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.19s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 1818.15
//
Query:       MMETSP1137-20121227|1194_1  [L=337]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (337 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       152  (0.0370551); expected 82.0 (0.02)
Passed bias filter:                      108  (0.0263286); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.15s 00:00:00.41 Elapsed: 00:00:00.41
# Mc/sec: 1084.89
//
Query:       MMETSP1137-20121227|1195_1  [L=169]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (169 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       153  (0.0372989); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.17s 00:00:00.33 Elapsed: 00:00:00.30
# Mc/sec: 743.54
//
Query:       MMETSP1137-20121227|1196_1  [L=235]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (235 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       127  (0.0309605); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.14s 00:00:00.35 Elapsed: 00:00:00.31
# Mc/sec: 1000.56
//
Query:       MMETSP1137-20121227|1197_1  [L=77]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.2e-13   48.9   0.4    1.4e-13   48.7   0.2    1.0  1  TIGR00601 rad23: UV excision repair protein Rad23


Domain annotation for each model (and alignments):
>> TIGR00601  rad23: UV excision repair protein Rad23
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.7   0.2   3.3e-17   1.4e-13       1      69 [.       1      66 [.       1      73 [. 0.93

  Alignments for each domain:
  == domain 1    score: 48.7 bits;  conditional E-value: 3.3e-17
   TIGR00601  1 vkltlKtlkqqkfkidlepdetvkelKekiesekgkdayevaqqkLiyaGkiLsDdktvkeykikekdf 69
                +++ +Ktl +++++id+e+d+t+  +Ke++e+++g   ++ +qq+Li+ Gk + D+k  +ey+i+ +  
  MMETSP1137-20121227|1197_1  1 MNIKVKTLTGKEIEIDIETDDTIARIKERVEEKEG---IPPQQQRLIFGGKQMLDEKKASEYNIEGGSV 66
                899********************************...**************************87654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (77 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       140  (0.0341297); expected 82.0 (0.02)
Passed bias filter:                      133  (0.0324232); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.13u 0.18s 00:00:00.31 Elapsed: 00:00:00.28
# Mc/sec: 350.45
//
Query:       MMETSP1137-20121227|1198_1  [L=208]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (208 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       127  (0.0309605); expected 82.0 (0.02)
Passed bias filter:                      115  (0.0280351); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.15s 00:00:00.34 Elapsed: 00:00:00.44
# Mc/sec: 623.95
//
Query:       MMETSP1137-20121227|1199_1  [L=73]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (73 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        33  (0.00804486); expected 82.0 (0.02)
Passed bias filter:                       33  (0.00804486); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.14s 00:00:00.26 Elapsed: 00:00:00.54
# Mc/sec: 178.43
//
Query:       MMETSP1137-20121227|1200_1  [L=50]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (50 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        27  (0.00658216); expected 82.0 (0.02)
Passed bias filter:                       26  (0.00633837); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.17s 00:00:00.29 Elapsed: 00:00:00.25
# Mc/sec: 263.98
//
Query:       MMETSP1137-20121227|1201_1  [L=218]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (218 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       136  (0.0331546); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.18s 00:00:00.39 Elapsed: 00:00:00.33
# Mc/sec: 871.93
//
Query:       MMETSP1137-20121227|1202_1  [L=679]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   3.3e-189  628.5   0.2   1.1e-188  626.7   0.1    1.6  1  TIGR01243 CDC48: AAA family ATPase, CDC48 subfamily
   4.5e-141  468.0   1.4    4.7e-74  247.5   0.5    2.1  2  TIGR01242 26Sp45: 26S proteasome subunit P45 family
   1.5e-135  450.5   1.1    1.7e-67  226.1   0.0    2.1  2  TIGR01241 FtsH_fam: ATP-dependent metallopeptidase HflB
   2.2e-101  337.9   2.7    1.3e-50  170.4   0.0    3.1  3  TIGR03689 pup_AAA: proteasome ATPase
    4.5e-15   53.0   0.0    7.4e-08   29.2   0.0    2.3  2  TIGR03922 T7SS_EccA: type VII secretion AAA-ATPase EccA
    2.7e-14   50.8   0.0    1.1e-06   25.8   0.0    2.9  3  TIGR00635 ruvB: Holliday junction DNA helicase RuvB
      4e-10   37.1   0.0    0.00026   17.9   0.0    2.7  3  TIGR00382 clpX: ATP-dependent Clp protease, ATP-binding subunit ClpX
    9.5e-09   32.4   1.1    0.00022   18.0   0.0    3.2  3  TIGR02928 TIGR02928: orc1/cdc6 family replication initiation protein
    1.4e-07   28.7   1.2      0.011   12.5   0.0    4.4  5  TIGR00390 hslU: ATP-dependent protease HslVU, ATPase subunit
    2.9e-07   26.9   0.6      0.018   11.0   0.1    3.8  4  TIGR02639 ClpA: ATP-dependent Clp protease ATP-binding subunit ClpA
      3e-06   24.9   0.1     0.0067   14.0   0.0    2.6  2  TIGR01313 therm_gnt_kin: carbohydrate kinase, thermoresistant glucokinase family
      5e-06   23.1   1.6      0.011   12.0   0.1    2.5  2  TIGR00763 lon: ATP-dependent protease La
    3.1e-05   21.5   0.0      0.052   10.9   0.0    2.6  2  TIGR03420 DnaA_homol_Hda: DnaA regulatory inactivator Hda
    3.3e-05   21.4   2.3     0.0029   15.0   0.0    2.9  4  TIGR02640 gas_vesic_GvpN: gas vesicle protein GvpN
    4.4e-05   20.5   0.0      0.002   15.0   0.0    2.3  2  TIGR02881 spore_V_K: stage V sporulation protein K
    8.1e-05   20.5   1.6       0.25    9.2   0.1    3.2  3  TIGR02173 cyt_kin_arch: putative cytidylate kinase
    0.00027   17.4   0.6       0.11    8.8   0.0    2.8  3  TIGR02903 spore_lon_C: ATP-dependent protease, Lon family
     0.0005   17.6   0.0       0.16    9.5   0.0    2.4  2  TIGR00455 apsK: adenylylsulfate kinase
     0.0005   17.1   0.3      0.047   10.6   0.0    2.9  3  TIGR00362 DnaA: chromosomal replication initiator protein DnaA
    0.00059   17.3   0.0       0.28    8.6   0.0    2.6  2  TIGR00678 holB: DNA polymerase III, delta' subunit
    0.00062   16.2   0.0      0.027   10.8   0.0    2.1  2  TIGR00602 rad24: checkpoint protein rad24
    0.00064   17.2   1.3       0.17    9.3   0.1    2.4  2  TIGR01351 adk: adenylate kinases
    0.00087   15.8   0.7      0.087    9.2   0.1    2.2  2  TIGR00368 TIGR00368: Mg chelatase-like protein
     0.0011   15.2   1.6        0.3    7.1   0.0    3.6  4  TIGR03345 VI_ClpV1: type VI secretion ATPase, ClpV1 family
     0.0025   15.1   0.0      0.064   10.4   0.0    2.2  2  TIGR02770 nickel_nikD: nickel import ATP-binding protein NikD
     0.0052   13.3   0.2       0.72    6.2   0.0    2.5  2  TIGR02902 spore_lonB: ATP-dependent protease LonB
  ------ inclusion threshold ------
      0.012   11.8   0.2        1.9    4.5   0.0    2.5  3  TIGR03346 chaperone_ClpB: ATP-dependent chaperone protein ClpB
      0.013   11.9   0.0       0.24    7.7   0.0    2.2  2  TIGR00764 lon_rel: putative ATP-dependent protease
      0.013   12.6   0.0       0.17    8.9   0.0    2.4  3  TIGR02397 dnaX_nterm: DNA polymerase III, subunit gamma and tau
      0.014   12.8   0.1        1.8    5.9   0.0    2.4  2  TIGR02982 heterocyst_DevA: ABC exporter ATP-binding subunit, DevA family
      0.018   12.5   1.3       0.17    9.4   0.1    2.6  2  TIGR00017 cmk: cytidylate kinase
      0.019   12.1   0.0        2.5    5.1   0.0    2.4  2  TIGR02782 TrbB_P: P-type conjugative transfer ATPase TrbB
      0.029   11.2   0.0        1.6    5.5   0.0    2.2  2  TIGR02788 VirB11: P-type DNA transfer ATPase VirB11


Domain annotation for each model (and alignments):
>> TIGR01243  CDC48: AAA family ATPase, CDC48 subfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  626.7   0.1  9.2e-191  1.1e-188      63     728 ..      18     674 ..       3     677 .. 0.92

  Alignments for each domain:
  == domain 1    score: 626.7 bits;  conditional E-value: 9.2e-191
   TIGR01243  63 irldgylrknagvaigdrvkvkrae.vkeakkvvlap...tqkirlgrdfedfvkekll..gkvlskgekvvvsvlege..lklvvvsttpagivrvteatevelkeeaveeeket.kvpevtyedigglkeavkkirelvelplkhpelfeklgieppkgvllygppgtgktllakavaneagayfiaingpeimskyygeseerlreifkeaeenapsiifideidaiapkreevtgevekrvvaqlltlmdglkgrgkvivigatnrpdaldpalrrpgrfdreieigvpdkegrkeilqihtrnmplaedvdldklaevthgfvgadlaalakeaamaalrrllregkidleaeeipkevleelkvtkkdfkealkmvepsalrevlvevpnvkwediggleevkqelreavewplkakevfeklgirppkgvllfgppgtgktllakavatesganfiavrgpeilskwvgesekaireifrkarqaapaiifldeidaiapargadlsea..vtdrivnqllteldgleensdvvviaatnrpdildpallrpgrldrlilvpapdeearleifkihtrslplaedvdleelakktegytgadieavvreaalaalresvksvakekleaeekeilkdlkvkkkdflealkkvkpsvskedlrvyeklake 728
                  rl    ++n+ +a gd+  +   + v ea+ ++l+    + ++  g  fed +  +l    ++l+ g+++  +v +ge  +k+ vv+  p+        +++    e++++ +   +   v y+diggl+++   ++elv+lplk pe+f+ lg+ pp+gvll gppg+gkt++a av  e+g yf  +ngpe+msk  ge+e  lr++f++ae+n+p+iifideidaiapkr+++ ge+e+r+++qlltl+dg+    +v+v+ at r + l+palrr grfdrei + +pd  gr eil+ +t+++ la dvdl+ la+ +hg+ gadl+ l+ eaam+++r   + g+id++ae+i    le + vt+  ++ a+ + +ps l e         +       e++++   av  p k+   +++ g++p kg+ll+gp g gktl+aka+a+e ++nfi+v+gpe+ls w gese ++re+f+kar aap+i+f+deid+ia  rg+ +s       rivnq+lte+dg+  ++ v +iaatnrpd+ld a++rpgr+d+l+++p pd+e+r+ ifk  tr+ pla+dvdl +la +t+g++gadi  v++ a+ +a+r+ +  ++k    +          ++k +f  al   + svs+ d++++ +++  
  MMETSP1137-20121227|1202_1  18 ARLSSTAKANLRLASGDTFLMSPLReVPEASMIMLTAiasSLEGFEGDAFEDSLAPFLKdaMRPLTVGDVIETPVGDGErlIKWKVVEMEPEMXCLAGADAQIFPDGEPISDDEAFeEDDAVGYDDIGGLDKQLAILKELVDLPLKQPEVFKTLGVRPPRGVLLHGPPGSGKTMIANAVKTETGVYFKQVNGPEVMSKRSGEAEGSLRQVFEDAEKNSPAIIFIDEIDAIAPKRDKTQGEMERRIISQLLTLLDGMNPASQVLVLAATSRANVLEPALRRFGRFDREIALTTPDVAGRLEILRKKTQKLRLAADVDLNALADDSHGYCGADLSQLVTEAAMQCVRE--KAGDIDIDAEDIDDATLESMVVTQAHLTYAMSKTHPSXLVEG----RRRPF-----RREARDDGDAAV--PAKFAAKYQRYGMQPSKGILLYGPSGCGKTLVAKAIANEVKSNFISVKGPELLSMWFGESESNVRELFNKARGAAPCILFFDEIDSIAKPRGSGQSGGgeAGXRIVNQILTEIDGVGAKKSVFIIAATNRPDMLDSAVMRPGRIDQLVYLPLPDRESRVAIFKANTRKSPLADDVDLYDLADRTDGFSGADITEVCQRACKLAIRQNIDESSKGSATVC-------SEIDKSHFDAALSTARKSVSQADIKKFMRFQAS 674
                 5777777889999999998888764499999998855110445566888999888877522599***********9995437999*********99999999999999*9987765356779*******************************************************************************************************************************************************************************************************************************8..568**********************************97553....33322.....357777777776..99****************************************************************************************998765433399*******************************************************************************************************99999888877666.......4699***********************999765 PP

>> TIGR01242  26Sp45: 26S proteasome subunit P45 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  247.5   0.5   3.8e-76   4.7e-74     113     353 ..     133     370 ..     119     381 .. 0.94
   2 !  219.0   0.0   1.8e-67   2.3e-65     140     350 ..     422     632 ..     414     645 .. 0.97

  Alignments for each domain:
  == domain 1    score: 247.5 bits;  conditional E-value: 3.8e-76
   TIGR01242 113 veerpevsyediGGlekqlreireavelplkkpelfeevGieppkGvllyGppGtGktllakavaeetnatfirvvgselvkkyiGeGarlvrevfklakekapsiifideidaiaakrldsstsGdrevqrtllqllaeldGfdprgnvkviaatnrldildpallrpGrfdrlievplpdleGrleilkihtrkmklaedvdleelaklteGasGadlkaivteaGmfaireerdkvtm 353
                  ee   v y+diGGl+kql  ++e v+lplk+pe+f+ +G+ pp+Gvll+GppG+Gkt++a av +et   f +v g e++ k  Ge    +r+vf+ a + +p+iifideidaia kr +  t G+ e +r + qll+ ldG++p  +v v+aat r ++l+pal r Grfdr i +  pd+ Grleil+ +t+k++la dvdl++la  ++G  Gadl  +vtea m  +re+   + +
  MMETSP1137-20121227|1202_1 133 FEEDDAVGYDDIGGLDKQLAILKELVDLPLKQPEVFKTLGVRPPRGVLLHGPPGSGKTMIANAVKTETGVYFKQVNGPEVMSKRSGEAEGSLRQVFEDAEKNSPAIIFIDEIDAIAPKRDK--TQGEME-RRIISQLLTLLDGMNPASQVLVLAATSRANVLEPALRRFGRFDREIALTTPDVAGRLEILRKKTQKLRLAADVDLNALADDSHGYCGADLSQLVTEAAMQCVREKAGDIDI 370
                 578889****************************************************************************************************************965..777777.68999***************************************************************************************************9877654 PP

  == domain 2    score: 219.0 bits;  conditional E-value: 1.8e-67
   TIGR01242 140 lplkkpelfeevGieppkGvllyGppGtGktllakavaeetnatfirvvgselvkkyiGeGarlvrevfklakekapsiifideidaiaakrldsstsGdrevqrtllqllaeldGfdprgnvkviaatnrldildpallrpGrfdrlievplpdleGrleilkihtrkmklaedvdleelaklteGasGadlkaivteaGmfaireerdk 350
                 +p k    +++ G++p kG+llyGp G+Gktl+aka+a+e+++ fi v g el+  + Ge  + vre+f+ a+  ap+i+f deid+ia  r   +++G     r + q+l+e+dG  ++  v +iaatnr+d+ld a++rpGr+d+l+ +plpd e r+ i+k  trk  la+dvdl +la  t+G+sGad+  ++  a   air++ d+
  MMETSP1137-20121227|1202_1 422 VPAKFAAKYQRYGMQPSKGILLYGPSGCGKTLVAKAIANEVKSNFISVKGPELLSMWFGESESNVRELFNKARGAAPCILFFDEIDSIAKPRGSGQSGGGEAGXRIVNQILTEIDGVGAKKSVFIIAATNRPDMLDSAVMRPGRIDQLVYLPLPDRESRVAIFKANTRKSPLADDVDLYDLADRTDGFSGADITEVCQRACKLAIRQNIDE 632
                 57777778999*************************************************************************************999999********************************************************************************************************98665 PP

>> TIGR01241  FtsH_fam: ATP-dependent metallopeptidase HflB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  223.0   0.2   1.2e-68   1.4e-66      48     301 ..     134     388 ..     113     401 .. 0.91
   2 !  226.1   0.0   1.3e-69   1.7e-67      76     283 ..     425     632 ..     423     667 .. 0.96

  Alignments for each domain:
  == domain 1    score: 223.0 bits;  conditional E-value: 1.2e-68
   TIGR01241  48 eekvkvtfkdvaGideakeelveivdf.LknpkkftklGakiPkGvllvGpPGtGktLlakavaGeagvpffsisGsdfvemfvGvGasrvrDlfeqakknaPciifiDeiDavGrkrgaglgggndereqtLnqlLvemDGfetnegvivlaatnrpdvLDkaLlrPGrfDrqvvvdkPdlkgreeilkvhakkvklaeevdlkkvarrtpGfsGadlanlvneaallaarknkke..vtlkeleeav.drviaGle 301
                 ee+  v ++d+ G+d++   l+e+vd  Lk+p+ f+ lG + P+Gvll GpPG+Gkt++a av  e gv f ++ G + +    G     +r +fe+a kn+P+iifiDeiDa+  kr ++ g  + er + + qlL+ +DG++ + +v+vlaat r++vL++aL r GrfDr++++ +Pd++gr eil+  ++k++la++vdl+++a    G+ Gadl+ lv eaa+ ++r++     ++++++++a+ + +++ ++
  MMETSP1137-20121227|1202_1 134 EEDDAVGYDDIGGLDKQLAILKELVDLpLKQPEVFKTLGVRPPRGVLLHGPPGSGKTMIANAVKTETGVYFKQVNGPEVMSKRSGEAEGSLRQVFEDAEKNSPAIIFIDEIDAIAPKRDKTQG--EMER-RIISQLLTLLDGMNPASQVLVLAATSRANVLEPALRRFGRFDREIALTTPDVAGRLEILRKKTQKLRLAADVDLNALADDSHGYCGADLSQLVTEAAMQCVREKAGDidIDAEDIDDATlESMVVTQA 388
                 568899********************88*******************************************************************************************9544..3444.689***************************************************************************************************98765116678999996244444444 PP

  == domain 2    score: 226.1 bits;  conditional E-value: 1.3e-69
   TIGR01241  76 knpkkftklGakiPkGvllvGpPGtGktLlakavaGeagvpffsisGsdfvemfvGvGasrvrDlfeqakknaPciifiDeiDavGrkrgaglgggndereqtLnqlLvemDGfetnegvivlaatnrpdvLDkaLlrPGrfDrqvvvdkPdlkgreeilkvhakkvklaeevdlkkvarrtpGfsGadlanlvneaallaarknkke 283
                 k + k+++ G +  kG+ll+Gp G GktL+aka+a e +  f+s+ G +++ m+ G   s vr+lf++a+ +aPci+f DeiD++ + rg g +gg +   + +nq+L+e+DG ++++ v ++aatnrpd+LD+a++rPGr D+ v + +Pd + r +i+k  ++k  la++vdl ++a rt GfsGad+  ++  a+ la r+n +e
  MMETSP1137-20121227|1202_1 425 KFAAKYQRYGMQPSKGILLYGPSGCGKTLVAKAIANEVKSNFISVKGPELLSMWFGESESNVRELFNKARGAAPCILFFDEIDSIAKPRGSGQSGGGEAGXRIVNQILTEIDGVGAKKSVFIIAATNRPDMLDSAVMRPGRIDQLVYLPLPDRESRVAIFKANTRKSPLADDVDLYDLADRTDGFSGADITEVCQRACKLAIRQNIDE 632
                 6689********************************************************************************************************************************************************************************************************9765 PP

>> TIGR03689  pup_AAA: proteasome ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  161.5   0.3   5.1e-50   6.4e-48     172     423 ..     132     371 ..     126     390 .. 0.85
   2 !  170.4   0.0   1.1e-52   1.3e-50     200     388 ..     422     597 ..     415     606 .. 0.91
   3 ?    4.4   0.0     0.022       2.7     436     466 ..     607     637 ..     602     655 .. 0.87

  Alignments for each domain:
  == domain 1    score: 161.5 bits;  conditional E-value: 5.1e-50
   TIGR03689 172 vleevPdvtyadiGGldsqieqirdavelPflhkelyreydlkpPkGvllyGPPGcGktliakavanslaekvaedgeaksyflnikGPellnkyvGeterqirliferarekaaegrPvvvffdemdslfrtrGsGvssdvettvvPqllaeldGveslenviviGasnredlidPailrPGrldvkirierPdaeaaadilakylte.dlPleedlaeadgdrea.avealiekvvda.lyareeenelvevt 423
                 ++ee   v+y+diGGld+q+  +++ v+lP++++e+++  +++pP+Gvll+GPPG+Gkt+ia av +          e+  yf ++ GPe+++k  Ge+e  +r +fe a    ++++P ++f+de+d++   r      ++e  ++ qll+ ldG++  + v+v+ a+ r ++++Pa+ r Gr+d  i +  Pd ++  +il k  ++  l  + dl +   d++  + ++l++ v +a + + +e+   +++ 
  MMETSP1137-20121227|1202_1 132 AFEEDDAVGYDDIGGLDKQLAILKELVDLPLKQPEVFKTLGVRPPRGVLLHGPPGSGKTMIANAVKT----------ETGVYFKQVNGPEVMSKRSGEAEGSLRQVFEDA----EKNSPAIIFIDEIDAIAPKRDK-TQGEMERRIISQLLTLLDGMNPASQVLVLAATSRANVLEPALRRFGRFDREIALTTPDVAGRLEILRKKTQKlRLAADVDLNALADDSHGyCGADLSQLVTEAaMQCVREKAGDIDID 371
                 5788999*********************************************************965..........34579*************************865....6789************999976.5679**************************************************************9986542455577888876665541556666666654144444444455555 PP

  == domain 2    score: 170.4 bits;  conditional E-value: 1.1e-52
   TIGR03689 200 lPflhkelyreydlkpPkGvllyGPPGcGktliakavanslaekvaedgeaksyflnikGPellnkyvGeterqirliferarekaaegrPvvvffdemdslfrtrGsGvssdvet..tvvPqllaeldGveslenviviGasnredlidPailrPGrldvkirierPdaeaaadilakyltedlPleedl 388
                 +P ++ + y++y+++p kG+llyGP GcGktl+aka+an            ks f+++kGPell+ + Ge+e ++r +f++ar +a    P ++ffde+ds+ + rGsG s   e+   +v q+l+e+dGv + + v +i a+nr d++d a++rPGr+d  + +  Pd+e+  +i++     + Pl++d+
  MMETSP1137-20121227|1202_1 422 VPAKFAAKYQRYGMQPSKGILLYGPSGCGKTLVAKAIANE----------VKSNFISVKGPELLSMWFGESESNVRELFNKARGAA----PCILFFDEIDSIAKPRGSGQSGGGEAgxRIVNQILTEIDGVGAKKSVFIIAATNRPDMLDSAVMRPGRIDQLVYLPLPDRESRVAIFKANTR-KSPLADDV 597
                 56677788*****************************984..........5789*****************************876....*********************98775338*********************************************************987654.44776654 PP

  == domain 3    score: 4.4 bits;  conditional E-value: 0.022
   TIGR03689 436 dlvsGamlanivdrakkaaikdeleggqkgl 466
                 d  sGa + ++ +ra k ai++++++ +kg 
  MMETSP1137-20121227|1202_1 607 DGFSGADITEVCQRACKLAIRQNIDESSKGS 637
                 6679********************9888774 PP

>> TIGR03922  T7SS_EccA: type VII secretion AAA-ATPase EccA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   0.0   1.4e-07   1.8e-05     314     411 ..     178     271 ..     145     309 .. 0.79
   2 !   29.2   0.0     6e-10   7.4e-08     310     422 ..     436     548 ..     429     558 .. 0.82

  Alignments for each domain:
  == domain 1    score: 21.4 bits;  conditional E-value: 1.4e-07
   TIGR03922 314 HlllaGPPGtGkttiArvvakiyaGlgvlrkpevrEvsRadligeyigeseaktnelidkaLg...gvlFlDEayaLvekrdgakddfGleaidtLLarlE 411
                  +ll GPPG Gkt iA++v    +G+        + v+  +++++  ge+e    ++ + a      ++F+DE+ a+  krd+++ ++   +i +LL  l+
  MMETSP1137-20121227|1202_1 178 GVLLHGPPGSGKTMIANAVK-TETGVY------FKQVNGPEVMSKRSGEAEGSLRQVFEDAEKnspAIIFIDEIDAIAPKRDKTQGEMERRIISQLLTLLD 271
                 5799**************95.455653......3456677777888888888888888776542227******************************9886 PP

  == domain 2    score: 29.2 bits;  conditional E-value: 6e-10
   TIGR03922 310 qrskHlllaGPPGtGkttiArvvakiyaGlgvlrkpevrEvsRadligeyigeseaktnelidkaLgg...vlFlDEayaLvek.rdga..kddfGleaidtLLarlEnd.RdrlvviiA 422
                 q sk +ll GP G Gkt +A+++a+         k + + v+  +l++ + gese +  el +ka g    +lF+DE+ ++ +  + g+  + + G  +++++L  ++     + v+iiA
  MMETSP1137-20121227|1202_1 436 QPSKGILLYGPSGCGKTLVAKAIANEV-------KSNFISVKGPELLSMWFGESESNVRELFNKARGAapcILFFDEIDSIAKPrGSGQsgGGEAGXRIVNQILTEIDGVgAKKSVFIIA 548
                 568899*******************85.......789999************************99864448*********98755565224689*********9998641334455554 PP

>> TIGR00635  ruvB: Holliday junction DNA helicase RuvB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.9   0.0       9.7   1.2e+03     240     280 ..      34      75 ..      27      77 .. 0.77
   2 !   25.8   0.0   8.5e-09   1.1e-06      33      97 ..     179     251 ..     174     344 .. 0.79
   3 !   21.7   0.0   1.6e-07   1.9e-05      32      93 ..     440     509 ..     426     513 .. 0.69

  Alignments for each domain:
  == domain 1    score: -3.9 bits;  conditional E-value: 9.7
   TIGR00635 240 DrklLkaliekfeggPvGletlaaal.gedaetledvlePyL 280
                 D+ l++ l e  e+  + l ++a++l g + ++ ed l P+L
  MMETSP1137-20121227|1202_1  34 DTFLMSPLREVPEASMIMLTAIASSLeGFEGDAFEDSLAPFL 75 
                 666667777777777788889999885679999999999998 PP

  == domain 2    score: 25.8 bits;  conditional E-value: 8.5e-09
   TIGR00635  33 vllyGPPGlGkttlakiiakelgvklkitsgpal..ekpgDlaailtal....eegd..vlfiDeihrlskav 97 
                 vll GPPG Gkt +a+ + +e gv  k ++gp++  +++g+  + l ++    e+++  ++fiDei +++++ 
  MMETSP1137-20121227|1202_1 179 VLLHGPPGSGKTMIANAVKTETGVYFKQVNGPEVmsKRSGEAEGSLRQVfedaEKNSpaIIFIDEIDAIAPKR 251
                 89******************************874345566555555542111444344*********99875 PP

  == domain 3    score: 21.7 bits;  conditional E-value: 1.6e-07
   TIGR00635  32 hvllyGPPGlGkttlakiiakelgvklkitsgpal......ekpgDlaailtale..egdvlfiDeihrl 93 
                  +llyGP G Gkt +ak ia+e++++   ++gp+l      e ++++  ++ + +  +  +lf Dei  +
  MMETSP1137-20121227|1202_1 440 GILLYGPSGCGKTLVAKAIANEVKSNFISVKGPELlsmwfgESESNVRELFNKARgaAPCILFFDEIDSI 509
                 69*******************************9833333223344444444332112346666666665 PP

>> TIGR00382  clpX: ATP-dependent Clp protease, ATP-binding subunit ClpX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   8.6e-06    0.0011     120     200 ..     179     253 ..     176     264 .. 0.83
   2 !   17.9   0.0   2.1e-06   0.00026     119     197 ..     440     512 ..     427     537 .. 0.84
   3 ?   -3.6   0.0       7.4   9.2e+02     157     193 ..     608     646 ..     602     661 .. 0.73

  Alignments for each domain:
  == domain 1    score: 15.9 bits;  conditional E-value: 8.6e-06
   TIGR00382 120 illiGptGsGktllaqtlakeldvpfaiadattlteaGyvGedvenillkllqaadydvekaekGiiyideidkiarksen 200
                 +ll Gp GsGkt++a+++  e  v f   +   +      Ge  e  l ++++    d ek    ii+ideid ia k ++
  MMETSP1137-20121227|1202_1 179 VLLHGPPGSGKTMIANAVKTETGVYFKQVNGPEVMS-KRSGE-AEGSLRQVFE----DAEKNSPAIIFIDEIDAIAPKRDK 253
                 7999**********************9888777654.34566.5777777766....66788899***********98775 PP

  == domain 2    score: 17.9 bits;  conditional E-value: 2.1e-06
   TIGR00382 119 nilliGptGsGktllaqtlakeldvpfaiadattlteaGyvGedvenillkllqaadydvekaekGiiyideidkiark 197
                  ill Gp+G Gktl+a+++a+e++  f       l    + Ge   n+  +l+++a      a   i++ deid ia+ 
  MMETSP1137-20121227|1202_1 440 GILLYGPSGCGKTLVAKAIANEVKSNFISVKGPELLS-MWFGESESNV-RELFNKAR----GAAPCILFFDEIDSIAKP 512
                 59************************98888888875.5789987775.78998875....57889**********984 PP

  == domain 3    score: -3.6 bits;  conditional E-value: 7.4
   TIGR00382 157 GyvGedvenillkllqaa.dydvekaekGii.yideidk 193
                 G+ G d+ ++ ++  + a   +++++ kG      eidk
  MMETSP1137-20121227|1202_1 608 GFSGADITEVCQRACKLAiRQNIDESSKGSAtVCSEIDK 646
                 888889999988888755267888888886514578887 PP

>> TIGR02928  TIGR02928: orc1/cdc6 family replication initiation protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.5   0.1    0.0007     0.087      38      62 ..     174     198 ..     164     207 .. 0.85
   2 ?    1.6   0.0      0.17        21     119     146 ..     226     253 ..     203     292 .. 0.74
   3 !   18.0   0.0   1.8e-06   0.00022      37      66 ..     434     464 ..     417     472 .. 0.86

  Alignments for each domain:
  == domain 1    score: 9.5 bits;  conditional E-value: 0.0007
   TIGR02928  38 srpsnvliyGktGtGKtavtkkvlk 62 
                 + p+ vl+ G++G+GKt+++++v  
  MMETSP1137-20121227|1202_1 174 RPPRGVLLHGPPGSGKTMIANAVKT 198
                 57899***************99865 PP

  == domain 2    score: 1.6 bits;  conditional E-value: 0.17
   TIGR02928 119 elvkeleeredsliivLDEiDklv.kkea 146
                 ++++  e+ +  +ii +DEiD +  k+++
  MMETSP1137-20121227|1202_1 226 QVFEDAEK-NSPAIIFIDEIDAIApKRDK 253
                 55555444.55567788*****9754444 PP

  == domain 3    score: 18.0 bits;  conditional E-value: 1.8e-06
   TIGR02928  37 gsrps.nvliyGktGtGKtavtkkvlkelee 66 
                 g++ps  +l+yG++G+GKt+v+k++ +e+++
  MMETSP1137-20121227|1202_1 434 GMQPSkGILLYGPSGCGKTLVAKAIANEVKS 464
                 55654169*******************9986 PP

>> TIGR00390  hslU: ATP-dependent protease HslVU, ATPase subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.0      0.61        76      47      68 ..     176     197 ..     172     210 .. 0.82
   2 !    8.5   0.0    0.0014      0.18     247     285 ..     235     272 ..     221     283 .. 0.75
   3 ?   -1.0   0.0       1.1   1.4e+02      53     113 ..     308     366 ..     299     405 .. 0.73
   4 !   12.5   0.0   8.7e-05     0.011      48     103 ..     439     492 ..     432     497 .. 0.85
   5 ?    1.3   0.0      0.22        27     249     268 ..     499     517 ..     492     541 .. 0.74

  Alignments for each domain:
  == domain 1    score: -0.2 bits;  conditional E-value: 0.61
   TIGR00390  47 PknilmiGstGvGkteiarrla 68 
                 P+ +l+ G+ G Gkt ia  + 
  MMETSP1137-20121227|1202_1 176 PRGVLLHGPPGSGKTMIANAVK 197
                 8899**************8775 PP

  == domain 2    score: 8.5 bits;  conditional E-value: 0.0014
   TIGR00390 247 esGiifideidkiakkgessgadvsreGvqrdllPiveG 285
                 +  iifideid ia k ++++ ++ r  +   ll +++G
  MMETSP1137-20121227|1202_1 235 SPAIIFIDEIDAIAPKRDKTQGEMERRII-SQLLTLLDG 272
                 447***********999888877777644.456666665 PP

  == domain 3    score: -1.0 bits;  conditional E-value: 1.1
   TIGR00390  53 iGstGvGkteiarr.laklaeaPfikveatkftevGyvGrdveslvrdlvdaavklvkeeki 113
                   +   G+ ei r+   kl  a  + ++a      Gy G d+  lv   ++aa++ v+e++ 
  MMETSP1137-20121227|1202_1 308 TTPDVAGRLEILRKkTQKLRLAADVDLNALADDSHGYCGADLSQLV---TEAAMQCVREKAG 366
                 5566678889888525688999999999999999999999999987...5778888877643 PP

  == domain 4    score: 12.5 bits;  conditional E-value: 8.7e-05
   TIGR00390  48 knilmiGstGvGkteiarrlaklaeaPfikveatkftevGyvGrdveslvrdlvda 103
                 k il+ G++G Gkt +a+ +a  ++  fi v       + + G + es vr+l ++
  MMETSP1137-20121227|1202_1 439 KGILLYGPSGCGKTLVAKAIANEVKSNFISVKGPELLSMWF-G-ESESNVRELFNK 492
                 89*****************************9988877655.3.667888888776 PP

  == domain 5    score: 1.3 bits;  conditional E-value: 0.22
   TIGR00390 249 Giifideidkiakkgessga 268
                  i+f deid iak    sg+
  MMETSP1137-20121227|1202_1 499 CILFFDEIDSIAKPR-GSGQ 517
                 699*********976.4444 PP

>> TIGR02639  ClpA: ATP-dependent Clp protease ATP-binding subunit ClpA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.0      0.03       3.7     487     526 ..     176     215 ..     170     217 .. 0.84
   2 !   11.0   0.1   0.00015     0.018     258     301 ..     216     259 ..     212     269 .. 0.87
   3 !    8.1   0.0    0.0011      0.14     485     516 ..     436     467 ..     424     473 .. 0.86
   4 ?   -0.6   0.0      0.49        60     260     296 ..     480     519 ..     476     532 .. 0.79

  Alignments for each domain:
  == domain 1    score: 3.4 bits;  conditional E-value: 0.03
   TIGR02639 487 vgsflfvGptGvGktelakqLaeelgvellrfDmseymek 526
                     l  Gp G Gkt +a ++ +e gv + + +  e m k
  MMETSP1137-20121227|1202_1 176 PRGVLLHGPPGSGKTMIANAVKTETGVYFKQVNGPEVMSK 215
                 4456789*********************999888777766 PP

  == domain 2    score: 11.0 bits;  conditional E-value: 0.00015
   TIGR02639 258 yrGdfeerlkevveeiekeedailfiDeihtivgagatsggsld 301
                   G+ e  l++v e+ ek++ ai+fiDei +i      ++g+++
  MMETSP1137-20121227|1202_1 216 RSGEAEGSLRQVFEDAEKNSPAIIFIDEIDAIAPKRDKTQGEME 259
                 56999**************************9888877777776 PP

  == domain 3    score: 8.1 bits;  conditional E-value: 0.0011
   TIGR02639 485 kPvgsflfvGptGvGktelakqLaeelgvell 516
                 +P    l +Gp+G Gkt +ak++a+e+  +++
  MMETSP1137-20121227|1202_1 436 QPSKGILLYGPSGCGKTLVAKAIANEVKSNFI 467
                 6888899*****************99877665 PP

  == domain 4    score: -0.6 bits;  conditional E-value: 0.49
   TIGR02639 260 GdfeerlkevveeiekeedailfiDeihtiv...gagats 296
                 G+ e  ++e+ ++ +     ilf Dei  i    g+g ++
  MMETSP1137-20121227|1202_1 480 GESESNVRELFNKARGAAPCILFFDEIDSIAkprGSGQSG 519
                 88899999999999999999********997333444444 PP

>> TIGR01313  therm_gnt_kin: carbohydrate kinase, thermoresistant glucokinase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.2   0.0    0.0033      0.42       2      32 ..     180     212 ..     179     220 .. 0.81
   2 !   14.0   0.0   5.4e-05    0.0067       2      27 ..     442     467 ..     441     475 .. 0.90

  Alignments for each domain:
  == domain 1    score: 8.2 bits;  conditional E-value: 0.0033
   TIGR01313   2 vlmGvaGsGkstiakelakklg..akfieGDdl 32 
                 +l G+ GsGk+ ia+++ ++ g  +k ++G ++
  MMETSP1137-20121227|1202_1 180 LLHGPPGSGKTMIANAVKTETGvyFKQVNGPEV 212
                 5789****************9955666777665 PP

  == domain 2    score: 14.0 bits;  conditional E-value: 5.4e-05
   TIGR01313   2 vlmGvaGsGkstiakelakklgakfi 27 
                 +l G++G+Gk+ +ak++a++++ +fi
  MMETSP1137-20121227|1202_1 442 LLYGPSGCGKTLVAKAIANEVKSNFI 467
                 789*******************9998 PP

>> TIGR00763  lon: ATP-dependent protease La
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.4   0.1   0.00053     0.066     357     449 ..     180     271 ..     176     276 .. 0.70
   2 !   12.0   0.1   8.9e-05     0.011     349     383 ..     434     468 ..     425     471 .. 0.82

  Alignments for each domain:
  == domain 1    score: 9.4 bits;  conditional E-value: 0.00053
   TIGR00763 357 clvGPPGVGKtSlaksiAkalnrkfvrlslGGlkDvaeikGHRrtYvGalPGkiiqglkkvktenP.lillDEiDKlg.......ssvrGdPasaLLEvLD 449
                  l+GPPG GKt +a+++ + ++  f ++   G     e+   R    G   G + q ++ +++++P +i++DEiD ++        +++    s LL +LD
  MMETSP1137-20121227|1202_1 180 LLHGPPGSGKTMIANAVKTETGVYFKQV--NG----PEVMSKRS---GEAEGSLRQVFEDAEKNSPaIIFIDEIDAIApkrdktqGEMERRIISQLLTLLD 271
                 699*************988777655443..33....56666664...788899999999999999845678999988877633333333334566666666 PP

  == domain 2    score: 12.0 bits;  conditional E-value: 8.9e-05
   TIGR00763 349 kklkgkilclvGPPGVGKtSlaksiAkalnrkfvr 383
                 + + +k + l+GP G GKt +ak+iA+ ++ +f+ 
  MMETSP1137-20121227|1202_1 434 GMQPSKGILLYGPSGCGKTLVAKAIANEVKSNFIS 468
                 555567799*********************99985 PP

>> TIGR03420  DnaA_homol_Hda: DnaA regulatory inactivator Hda
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.9   0.0   0.00042     0.052      38     173 ..     176     324 ..     164     335 .. 0.62
   2 !    7.8   0.0    0.0038      0.47      38      65 ..     438     465 ..     424     514 .. 0.76

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 0.00042
   TIGR03420  38 erllylwGesgsGksHLLqAacaaaee.....agksaiylplkelaqllvevlegleq..aelvalDdvealagerewee.........alfdlynrlresgrkllvageaaPaelklrlpDLrtRlawglvfqlkplsdeeklaaLqeraa 173
                  r + l G++gsGk+ + +A+ +++       +g +++     e++  l +v+e +e+   +++ +D+++a+a +r++ +         +l+ l+  ++ + + l++a+++ ++ l+ +   Lr        ++l + + +++l++L+++ +
  MMETSP1137-20121227|1202_1 176 PRGVLLHGPPGSGKTMIANAVKTETGVyfkqvNGPEVMSKRSGEAEGSLRQVFEDAEKnsPAIIFIDEIDAIAPKRDKTQgemerriisQLLTLLDGMNPASQVLVLAATSRANVLEPA---LRRFGRFDREIALTTPDVAGRLEILRKKTQ 324
                 567899***************99865411001333333333444455556999988762257999*******99886643111222222456666666666777777777777666655...443334455556666666666666666555 PP

  == domain 2    score: 7.8 bits;  conditional E-value: 0.0038
   TIGR03420  38 erllylwGesgsGksHLLqAacaaaeea 65 
                 ++ + l+G+sg+Gk+   +A++++++++
  MMETSP1137-20121227|1202_1 438 SKGILLYGPSGCGKTLVAKAIANEVKSN 465
                 55689*****************999876 PP

>> TIGR02640  gas_vesic_GvpN: gas vesicle protein GvpN
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   0.0     0.028       3.4      23      45 ..     178     200 ..     173     217 .. 0.83
   2 ?   -2.8   0.1       6.1   7.5e+02     180     210 ..     305     335 ..     301     384 .. 0.57
   3 !   15.0   0.0   2.4e-05    0.0029      21      56 ..     438     473 ..     424     481 .. 0.84
   4 ?   -3.0   0.0       7.1   8.9e+02     181     212 ..     571     600 ..     566     647 .. 0.48

  Alignments for each domain:
  == domain 1    score: 4.9 bits;  conditional E-value: 0.028
   TIGR02640  23 pvhlrGPaGtGktslalhvakkr 45 
                  v l GP G+Gkt +a +v  + 
  MMETSP1137-20121227|1202_1 178 GVLLHGPPGSGKTMIANAVKTET 200
                 67899***********9997765 PP

  == domain 2    score: -2.8 bits;  conditional E-value: 6.1
   TIGR02640 180 isvdykdeetetaivraktdvaeesaaaivr 210
                 i +  +d +  ++i+r+kt++ +  a+  ++
  MMETSP1137-20121227|1202_1 305 IALTTPDVAGRLEILRKKTQKLRLAADVDLN 335
                 4566788889999999999876665554433 PP

  == domain 3    score: 15.0 bits;  conditional E-value: 2.4e-05
   TIGR02640  21 gypvhlrGPaGtGktslalhvakkrdrPvvllnGda 56 
                    + l GP+G+Gkt +a ++a++ +   + ++G +
  MMETSP1137-20121227|1202_1 438 SKGILLYGPSGCGKTLVAKAIANEVKSNFISVKGPE 473
                 567889********************9999999865 PP

  == domain 4    score: -3.0 bits;  conditional E-value: 7.1
   TIGR02640 181 svdykdeetetaivraktdvaeesaaaivrlv 212
                 +++ +d+e  +ai +a+t +  ++ a+ v+l 
  MMETSP1137-20121227|1202_1 571 YLPLPDRESRVAIFKANTRK--SPLADDVDLY 600
                 56777888888887776654..3333444433 PP

>> TIGR02881  spore_V_K: stage V sporulation protein K
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.0      0.08        10      46     126 ..     180     256 ..     169     298 .. 0.66
   2 !   15.0   0.0   1.6e-05     0.002      45     137 ..     441     531 ..     427     564 .. 0.82

  Alignments for each domain:
  == domain 1    score: 2.9 bits;  conditional E-value: 0.08
   TIGR02881  46 ifkGnPGtGkttvarllaklfkelnvlskGhlieveradlvGeyiGhtaqktrevikkalGGvlfideayslarGGekdfG 126
                 +++G PG+Gkt +a  +    +e +v  k        +   Ge  G    ++ e  +k +  ++fide  ++a   +k  G
  MMETSP1137-20121227|1202_1 180 LLHGPPGSGKTMIANAVK---TETGVYFKQVNGPEVMSKRSGEAEGSLR-QVFEDAEKNSPAIIFIDEIDAIAPKRDKTQG 256
                 67899******9998764...4555555532222222333466666543.3445556666777777777777766666555 PP

  == domain 2    score: 15.0 bits;  conditional E-value: 1.6e-05
   TIGR02881  45 mifkGnPGtGkttvarllaklfkelnvlskGhlieveradlvGeyiGhtaqktrevikkalGG...vlfideaysla..rGGekdfGkeaidtlvkem 137
                 +++ G  G Gkt va+ +a+ +       k ++i v+  +l+  + G++  ++re+ +ka G    +lf de  s+a  rG  +  G ea   +v+++
  MMETSP1137-20121227|1202_1 441 ILLYGPSGCGKTLVAKAIANEV-------KSNFISVKGPELLSMWFGESESNVRELFNKARGAapcILFFDEIDSIAkpRGSGQSGGGEAGXRIVNQI 531
                 5677999*********999743.......7789999999*********************9954449******9998667888888888887777665 PP

>> TIGR02173  cyt_kin_arch: putative cytidylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.5   0.0    0.0033      0.41       4      25 ..     180     201 ..     178     215 .. 0.84
   2 ?   -1.2   0.0       3.1   3.8e+02      55      86 ..     364     395 ..     345     402 .. 0.64
   3 !    9.2   0.1     0.002      0.25       3      30 ..     441     468 ..     440     472 .. 0.90

  Alignments for each domain:
  == domain 1    score: 8.5 bits;  conditional E-value: 0.0033
   TIGR02173   4 visGpPGsGkttvakilaekls 25 
                  + GpPGsGkt +a+ +  + +
  MMETSP1137-20121227|1202_1 180 LLHGPPGSGKTMIANAVKTETG 201
                 678************9987755 PP

  == domain 2    score: -1.2 bits;  conditional E-value: 3.1
   TIGR02173  55 keiDkkiDrkikeiaekeknvvlesrlagWll 86 
                 k  D +iD + ++ a+ e+ vv  ++l+  + 
  MMETSP1137-20121227|1202_1 364 KAGDIDIDAEDIDDATLESMVVTQAHLTYAMS 395
                 33344566676777777777777777776555 PP

  == domain 3    score: 9.2 bits;  conditional E-value: 0.002
   TIGR02173   3 ivisGpPGsGkttvakilaeklslklis 30 
                 i + Gp G Gkt vak +a+++  ++is
  MMETSP1137-20121227|1202_1 441 ILLYGPSGCGKTLVAKAIANEVKSNFIS 468
                 5678******************999998 PP

>> TIGR02903  spore_lon_C: ATP-dependent protease, Lon family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.7   0.0    0.0075      0.93     175     196 ..     176     197 ..     164     208 .. 0.84
   2 ?   -2.2   0.0       1.9   2.3e+02     315     344 ..     269     298 ..     261     341 .. 0.66
   3 !    8.8   0.0    0.0009      0.11     176     201 ..     439     464 ..     420     469 .. 0.87

  Alignments for each domain:
  == domain 1    score: 5.7 bits;  conditional E-value: 0.0075
   TIGR02903 175 pqhiilyGppGvGkttaarlal 196
                 p+ ++l+GppG Gkt +a  + 
  MMETSP1137-20121227|1202_1 176 PRGVLLHGPPGSGKTMIANAVK 197
                 889************9997664 PP

  == domain 2    score: -2.2 bits;  conditional E-value: 1.9
   TIGR02903 315 lfekGapadfvliGattrdpeeinpalrsr 344
                 l++   pa  vl+ a+t   + ++palr  
  MMETSP1137-20121227|1202_1 269 LLDGMNPASQVLVLAATSRANVLEPALRRF 298
                 6677789**********99********953 PP

  == domain 3    score: 8.8 bits;  conditional E-value: 0.0009
   TIGR02903 176 qhiilyGppGvGkttaarlaleeakk 201
                 + i+lyGp G Gkt +a+ + +e+k 
  MMETSP1137-20121227|1202_1 439 KGILLYGPSGCGKTLVAKAIANEVKS 464
                 469***************99999986 PP

>> TIGR00455  apsK: adenylylsulfate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   0.0     0.021       2.6      23      41 ..     181     199 ..     175     215 .. 0.84
   2 !    9.5   0.0    0.0013      0.16      12      48 ..     432     468 ..     425     472 .. 0.80

  Alignments for each domain:
  == domain 1    score: 5.5 bits;  conditional E-value: 0.021
   TIGR00455  23 ltGlsgsGkstianalekk 41 
                 l G+ gsGk+ iana++ +
  MMETSP1137-20121227|1202_1 181 LHGPPGSGKTMIANAVKTE 199
                 789************9864 PP

  == domain 2    score: 9.5 bits;  conditional E-value: 0.0013
   TIGR00455  12 akkkqksvvlWltGlsgsGkstianalekkLeekglr 48 
                     q s  + l G+sg Gk+ +a+a++++++++ ++
  MMETSP1137-20121227|1202_1 432 RYGMQPSKGILLYGPSGCGKTLVAKAIANEVKSNFIS 468
                 4555667778899***************999887665 PP

>> TIGR00362  DnaA: chromosomal replication initiator protein DnaA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.0      0.76        94     140     160 ..     179     199 ..     172     208 .. 0.88
   2 ?    2.4   0.0      0.11        14     257     290 ..     300     331 ..     228     366 .. 0.74
   3 !   10.6   0.0   0.00038     0.047     138     165 ..     439     466 ..     421     470 .. 0.84

  Alignments for each domain:
  == domain 1    score: -0.3 bits;  conditional E-value: 0.76
   TIGR00362 140 lfiyGgvGlGKTHLlqAigne 160
                 ++++G  G GKT + +A+  e
  MMETSP1137-20121227|1202_1 179 VLLHGPPGSGKTMIANAVKTE 199
                 689*************99765 PP

  == domain 2    score: 2.4 bits;  conditional E-value: 0.11
   TIGR00362 257 RfewGLvvdieppdletrlaILkkkaeeeklelp 290
                 Rf+    +++++pd+  rl+IL+kk+++ +l  +
  MMETSP1137-20121227|1202_1 300 RFDR--EIALTTPDVAGRLEILRKKTQKLRLAAD 331
                 5555..357899**************99887665 PP

  == domain 3    score: 10.6 bits;  conditional E-value: 0.00038
   TIGR00362 138 nPlfiyGgvGlGKTHLlqAigneilkkn 165
                 + +++yG +G GKT   +Ai+ne+ ++ 
  MMETSP1137-20121227|1202_1 439 KGILLYGPSGCGKTLVAKAIANEVKSNF 466
                 5689*******************98875 PP

>> TIGR00678  holB: DNA polymerase III, delta' subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   0.0     0.014       1.7      14      35 ..     176     197 ..     169     279 .. 0.84
   2 !    8.6   0.0    0.0023      0.28      13      38 ..     437     462 ..     425     472 .. 0.85

  Alignments for each domain:
  == domain 1    score: 6.0 bits;  conditional E-value: 0.014
   TIGR00678  14 ahAlLfaGpeGvGkealaeala 35 
                 +  +L++Gp+G+Gk+++a+a+ 
  MMETSP1137-20121227|1202_1 176 PRGVLLHGPPGSGKTMIANAVK 197
                 6789**************9975 PP

  == domain 2    score: 8.6 bits;  conditional E-value: 0.0023
   TIGR00678  13 lahAlLfaGpeGvGkealaealakal 38 
                  ++ +L++Gp+G+Gk+ +a+a+a+++
  MMETSP1137-20121227|1202_1 437 PSKGILLYGPSGCGKTLVAKAIANEV 462
                 56789******************987 PP

>> TIGR00602  rad24: checkpoint protein rad24
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.0     0.044       5.5     104     144 ..     170     210 ..     149     228 .. 0.78
   2 !   10.8   0.0   0.00021     0.027     108     138 ..     436     466 ..     427     492 .. 0.83

  Alignments for each domain:
  == domain 1    score: 3.2 bits;  conditional E-value: 0.044
   TIGR00602 104 vLeskkkriLLitGPsGCgKsTvikiLsKelgikvqewlNp 144
                  L +++ r  L+ GP+G gK+ +      e g+ +++   p
  MMETSP1137-20121227|1202_1 170 TLGVRPPRGVLLHGPPGSGKTMIANAVKTETGVYFKQVNGP 210
                 566778888899********998888888888877765444 PP

  == domain 2    score: 10.8 bits;  conditional E-value: 0.00021
   TIGR00602 108 kkkriLLitGPsGCgKsTvikiLsKelgikv 138
                 ++ + +L+ GPsGCgK+ v k ++ e   ++
  MMETSP1137-20121227|1202_1 436 QPSKGILLYGPSGCGKTLVAKAIANEVKSNF 466
                 566667899************9999876655 PP

>> TIGR01351  adk: adenylate kinases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.3   0.1    0.0014      0.17       2      25 ..     179     202 ..     178     212 .. 0.90
   2 ?    6.5   0.1      0.01       1.2       2      29 ..     441     468 ..     440     472 .. 0.92

  Alignments for each domain:
  == domain 1    score: 9.3 bits;  conditional E-value: 0.0014
   TIGR01351   2 lvllGpPGsGKGTqakrlaeklgl 25 
                 ++l GpPGsGK  +a+ +++++g+
  MMETSP1137-20121227|1202_1 179 VLLHGPPGSGKTMIANAVKTETGV 202
                 6899***************99986 PP

  == domain 2    score: 6.5 bits;  conditional E-value: 0.01
   TIGR01351   2 lvllGpPGsGKGTqakrlaeklglvhis 29 
                 ++l Gp G+GK  +ak +a++++   is
  MMETSP1137-20121227|1202_1 441 ILLYGPSGCGKTLVAKAIANEVKSNFIS 468
                 6899******************999988 PP

>> TIGR00368  TIGR00368: Mg chelatase-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.2   0.1    0.0007     0.087     214     232 ..     179     197 ..     173     201 .. 0.89
   2 ?    4.6   0.0     0.017       2.1     213     232 ..     440     459 ..     434     465 .. 0.88

  Alignments for each domain:
  == domain 1    score: 9.2 bits;  conditional E-value: 0.0007
   TIGR00368 214 llllGPPGsGktllakrlq 232
                 +ll GPPGsGkt++a+ ++
  MMETSP1137-20121227|1202_1 179 VLLHGPPGSGKTMIANAVK 197
                 7999**********99875 PP

  == domain 2    score: 4.6 bits;  conditional E-value: 0.017
   TIGR00368 213 nllllGPPGsGktllakrlq 232
                  +ll GP G Gktl+ak + 
  MMETSP1137-20121227|1202_1 440 GILLYGPSGCGKTLVAKAIA 459
                 589*************9875 PP

>> TIGR03345  VI_ClpV1: type VI secretion ATPase, ClpV1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.1       1.3   1.6e+02     595     616 ..     176     196 ..     172     199 .. 0.80
   2 ?    3.5   0.0     0.029       3.6     262     291 ..     218     246 ..     214     251 .. 0.87
   3 !    7.1   0.0    0.0024       0.3     594     620 ..     436     462 ..     425     466 .. 0.86
   4 ?    0.6   0.0      0.21        27     262     304 ..     480     523 ..     476     531 .. 0.75

  Alignments for each domain:
  == domain 1    score: -2.0 bits;  conditional E-value: 1.3
   TIGR03345 595 PlgvFllvGpsGvGktetalal 616
                 P gv ll Gp G Gkt  a a+
  MMETSP1137-20121227|1202_1 176 PRGV-LLHGPPGSGKTMIANAV 196
                 6676.789********988876 PP

  == domain 2    score: 3.5 bits;  conditional E-value: 0.029
   TIGR03345 262 GeFekRlksvidevkasekpiilFiDeaHt 291
                 Ge e  l++v +++++ ++p i+FiDe+ +
  MMETSP1137-20121227|1202_1 218 GEAEGSLRQVFEDAEK-NSPAIIFIDEIDA 246
                 999*********9876.679999****975 PP

  == domain 3    score: 7.1 bits;  conditional E-value: 0.0024
   TIGR03345 594 kPlgvFllvGpsGvGktetalalAell 620
                 +P    ll GpsG Gkt  a a+A+++
  MMETSP1137-20121227|1202_1 436 QPSKGILLYGPSGCGKTLVAKAIANEV 462
                 6777789*****************975 PP

  == domain 4    score: 0.6 bits;  conditional E-value: 0.21
   TIGR03345 262 GeFekRlksvidevkasekpiilFiDeaHtli...GaGgqaGqgDa 304
                 Ge e+ ++++ ++++  ++p ilF De+ ++    G+ gq+G+g+a
  MMETSP1137-20121227|1202_1 480 GESESNVRELFNKARG-AAPCILFFDEIDSIAkprGS-GQSGGGEA 523
                 8889999999988765.57*********998744344.45555554 PP

>> TIGR02770  nickel_nikD: nickel import ATP-binding protein NikD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.0      0.18        22      15      50 ..     179     214 ..     170     283 .. 0.71
   2 !   10.4   0.0   0.00052     0.064      13      46 ..     439     472 ..     432     504 .. 0.87

  Alignments for each domain:
  == domain 1    score: 2.1 bits;  conditional E-value: 0.18
   TIGR02770  15 lalvGesGsGksltalailglldkeltktsGeilld 50 
                 + l G  GsGk++ a a+    +    +++G  +++
  MMETSP1137-20121227|1202_1 179 VLLHGPPGSGKTMIANAVKTETGVYFKQVNGPEVMS 214
                 6678999**********9988887788888754443 PP

  == domain 2    score: 10.4 bits;  conditional E-value: 0.00052
   TIGR02770  13 kvlalvGesGsGksltalailglldkeltktsGe 46 
                 k + l G sG+Gk+l+a+ai +  +++ ++++G 
  MMETSP1137-20121227|1202_1 439 KGILLYGPSGCGKTLVAKAIANEVKSNFISVKGP 472
                 557789*******************999999995 PP

>> TIGR02902  spore_lonB: ATP-dependent protease LonB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.0     0.021       2.6      86     107 ..     176     197 ..     168     206 .. 0.84
   2 !    6.2   0.0    0.0058      0.72      88     116 ..     440     468 ..     426     475 .. 0.82

  Alignments for each domain:
  == domain 1    score: 4.3 bits;  conditional E-value: 0.021
   TIGR02902  86 pqhviiyGppGvGktaaarlvl 107
                 p+ v+++GppG Gkt  a  v 
  MMETSP1137-20121227|1202_1 176 PRGVLLHGPPGSGKTMIANAVK 197
                 889************9998765 PP

  == domain 2    score: 6.2 bits;  conditional E-value: 0.0058
   TIGR02902  88 hviiyGppGvGktaaarlvleeakksaas 116
                  +++yGp G Gkt  a+ + +e k +  s
  MMETSP1137-20121227|1202_1 440 GILLYGPSGCGKTLVAKAIANEVKSNFIS 468
                 4789**************99999987665 PP

>> TIGR03346  chaperone_ClpB: ATP-dependent chaperone protein ClpB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0       3.9   4.9e+02     598     614 ..     179     195 ..     174     199 .. 0.59
   2 ?    4.5   0.0     0.015       1.9     245     289 ..     215     259 ..     209     339 .. 0.80
   3 ?    4.5   0.0     0.016       1.9     593     618 ..     436     461 ..     427     467 .. 0.89

  Alignments for each domain:
  == domain 1    score: -3.5 bits;  conditional E-value: 3.9
   TIGR03346 598 flflGptGvGktelaka 614
                  l+ Gp G Gkt +a a
  MMETSP1137-20121227|1202_1 179 VLLHGPPGSGKTMIANA 195
                 45556666666666655 PP

  == domain 2    score: 4.5 bits;  conditional E-value: 0.015
   TIGR03346 245 kyrGefeerlkavlkevekseGeiilfidelhtlvG.aGkaeGald 289
                 k  Ge e  l+ v+++ ek+    i+fide+ ++     k++G ++
  MMETSP1137-20121227|1202_1 215 KRSGEAEGSLRQVFEDAEKNS-PAIIFIDEIDAIAPkRDKTQGEME 259
                 778*************98876.5678*****999751467777776 PP

  == domain 3    score: 4.5 bits;  conditional E-value: 0.016
   TIGR03346 593 rPigsflflGptGvGktelakalaef 618
                 +P    l+ Gp G Gkt +aka+a+ 
  MMETSP1137-20121227|1202_1 436 QPSKGILLYGPSGCGKTLVAKAIANE 461
                 68888999***************986 PP

>> TIGR00764  lon_rel: putative ATP-dependent protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   0.0    0.0019      0.24      34      58 ..     173     197 ..     149     233 .. 0.85
   2 ?    1.8   0.0      0.12        15      37      59 ..     438     460 ..     419     469 .. 0.82

  Alignments for each domain:
  == domain 1    score: 7.7 bits;  conditional E-value: 0.0019
   TIGR00764  34 akqkrnvlliGePGvGksmlakama 58 
                 ++  r vll G PG Gk+m+a+a+ 
  MMETSP1137-20121227|1202_1 173 VRPPRGVLLHGPPGSGKTMIANAVK 197
                 566799****************984 PP

  == domain 2    score: 1.8 bits;  conditional E-value: 0.12
   TIGR00764  37 krnvlliGePGvGksmlakamae 59 
                  + +ll G  G Gk+++aka+a+
  MMETSP1137-20121227|1202_1 438 SKGILLYGPSGCGKTLVAKAIAN 460
                 46799****************96 PP

>> TIGR02397  dnaX_nterm: DNA polymerase III, subunit gamma and tau
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.0      0.64        80      39      54 ..     179     194 ..     174     199 .. 0.87
   2 ?   -3.5   0.0         8     1e+03     145     210 ..     275     343 ..     273     357 .. 0.67
   3 ?    8.9   0.0    0.0014      0.17      37      60 ..     439     462 ..     434     469 .. 0.88

  Alignments for each domain:
  == domain 1    score: 0.1 bits;  conditional E-value: 0.64
   TIGR02397  39 yLfsGprGvGKTsiAr 54 
                  L+ Gp G GKT iA 
  MMETSP1137-20121227|1202_1 179 VLLHGPPGSGKTMIAN 194
                 699*********9996 PP

  == domain 2    score: -3.5 bits;  conditional E-value: 8
   TIGR02397 145 pehvvFilaTtelekipetilSRcqrfdfk.kikeekiverlkkilkke.kikv.eeeaLeliarkaeG 210
                 p + v +la t  ++++e  l R  rfd +  +++ +++ rl+ + kk  k+++  +  L+++a+ ++G
  MMETSP1137-20121227|1202_1 275 PASQVLVLAATSRANVLEPALRRFGRFDREiALTTPDVAGRLEILRKKTqKLRLaADVDLNALADDSHG 343
                 555678999999999999999999999866356777777777655544313332123345666665555 PP

  == domain 3    score: 8.9 bits;  conditional E-value: 0.0014
   TIGR02397  37 hayLfsGprGvGKTsiArilAkal 60 
                 +  L++Gp G+GKT +A+ +A+ +
  MMETSP1137-20121227|1202_1 439 KGILLYGPSGCGKTLVAKAIANEV 462
                 5689****************9866 PP

>> TIGR02982  heterocyst_DevA: ABC exporter ATP-binding subunit, DevA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.0     0.049       6.1      27      49 ..     172     194 ..     166     203 .. 0.82
   2 ?    5.9   0.0     0.015       1.8      29      51 ..     436     458 ..     430     482 .. 0.82

  Alignments for each domain:
  == domain 1    score: 4.2 bits;  conditional E-value: 0.049
   TIGR02982  27 eiepgeiviltGpsGsGkttllt 49 
                  ++p   v+l Gp GsGkt + +
  MMETSP1137-20121227|1202_1 172 GVRPPRGVLLHGPPGSGKTMIAN 194
                 56677779***********9865 PP

  == domain 2    score: 5.9 bits;  conditional E-value: 0.015
   TIGR02982  29 epgeiviltGpsGsGkttlltli 51 
                 +p   ++l GpsG+Gkt +   i
  MMETSP1137-20121227|1202_1 436 QPSKGILLYGPSGCGKTLVAKAI 458
                 5666789**********876665 PP

>> TIGR00017  cmk: cytidylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.0      0.46        57       7      27 ..     181     201 ..     178     206 .. 0.83
   2 ?    9.4   0.1    0.0014      0.17       6      32 ..     442     468 ..     438     471 .. 0.89

  Alignments for each domain:
  == domain 1    score: 1.1 bits;  conditional E-value: 0.46
   TIGR00017   7 iDGPsaaGKstvakalaeklg 27 
                 + GP ++GK+ +a+a+  + g
  MMETSP1137-20121227|1202_1 181 LHGPPGSGKTMIANAVKTETG 201
                 57************9987765 PP

  == domain 2    score: 9.4 bits;  conditional E-value: 0.0014
   TIGR00017   6 aiDGPsaaGKstvakalaeklgykyld 32 
                  + GPs+ GK+ vaka+a++++ ++++
  MMETSP1137-20121227|1202_1 442 LLYGPSGCGKTLVAKAIANEVKSNFIS 468
                 567*****************9999987 PP

>> TIGR02782  TrbB_P: P-type conjugative transfer ATPase TrbB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   0.0      0.02       2.5     134     158 ..     174     198 ..     162     206 .. 0.85
   2 ?    4.3   0.0     0.036       4.5     135     165 ..     437     467 ..     422     470 .. 0.88

  Alignments for each domain:
  == domain 1    score: 5.1 bits;  conditional E-value: 0.02
   TIGR02782 134 aarknilvvGGtgsGkttLanalla 158
                 +  + +l+ G  gsGkt +ana+  
  MMETSP1137-20121227|1202_1 174 RPPRGVLLHGPPGSGKTMIANAVKT 198
                 556889****************965 PP

  == domain 2    score: 4.3 bits;  conditional E-value: 0.036
   TIGR02782 135 arknilvvGGtgsGkttLanallaeiaksap 165
                   k il+ G  g Gkt +a a+ +e+ ++++
  MMETSP1137-20121227|1202_1 437 PSKGILLYGPSGCGKTLVAKAIANEVKSNFI 467
                 5688********************9988765 PP

>> TIGR02788  VirB11: P-type DNA transfer ATPase VirB11
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.0     0.064       7.9     133     164 ..     165     196 ..     142     200 .. 0.79
   2 ?    5.5   0.0     0.013       1.6     134     169 ..     428     463 ..     411     476 .. 0.86

  Alignments for each domain:
  == domain 1    score: 3.2 bits;  conditional E-value: 0.064
   TIGR02788 133 ikeFlklaiaakkniiisGgtgsgKTTflkal 164
                  + F  l ++  + +++ G +gsgKT + +a+
  MMETSP1137-20121227|1202_1 165 PEVFKTLGVRPPRGVLLHGPPGSGKTMIANAV 196
                 45666778888899*************99987 PP

  == domain 2    score: 5.5 bits;  conditional E-value: 0.013
   TIGR02788 134 keFlklaiaakkniiisGgtgsgKTTflkalvkliP 169
                 +++ +  ++  k i++ G +g gKT + ka+ +++ 
  MMETSP1137-20121227|1202_1 428 AKYQRYGMQPSKGILLYGPSGCGKTLVAKAIANEVK 463
                 56778899999********************99875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (679 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       253  (0.0616772); expected 82.0 (0.02)
Passed bias filter:                      234  (0.0570453); expected 82.0 (0.02)
Passed Vit filter:                        78  (0.0190151); expected 4.1 (0.001)
Passed Fwd filter:                        33  (0.00804486); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              33  [number of targets reported over threshold]
# CPU time: 1.03u 0.20s 00:00:01.23 Elapsed: 00:00:00.91
# Mc/sec: 984.84
//
Query:       MMETSP1137-20121227|1203_1  [L=165]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (165 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        41  (0.00999512); expected 82.0 (0.02)
Passed bias filter:                       36  (0.00877621); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.14s 00:00:00.31 Elapsed: 00:00:00.44
# Mc/sec: 494.96
//
Query:       MMETSP1137-20121227|1204_1  [L=219]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (219 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        82  (0.0199902); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.15s 00:00:00.37 Elapsed: 00:00:00.30
# Mc/sec: 963.52
//
Query:       MMETSP1137-20121227|1205_1  [L=307]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.6e-25   86.8   0.2    8.2e-15   52.8   0.3    2.9  3  TIGR00189 tesB: acyl-CoA thioesterase II


Domain annotation for each model (and alignments):
>> TIGR00189  tesB: acyl-CoA thioesterase II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.1   0.0   3.3e-11   1.4e-07      16     118 ..      33     141 ..      25     149 .. 0.80
   2 ?    1.1   0.0     0.011        47     178     215 ..     165     205 ..     156     220 .. 0.68
   3 !   52.8   0.3     2e-18   8.2e-15     223     282 .]     235     295 ..     217     295 .. 0.94

  Alignments for each domain:
  == domain 1    score: 29.1 bits;  conditional E-value: 3.3e-11
   TIGR00189  16 lskgresskrvfGGqvvgQaLaAaektveeefiphslhsyFikaGdvkkpiiykVerlrdgrsFitrrvkavqdgk...liftlqisFq..skekdsieh..qstmPkvp 118
                 ++ +r+ ++r+fGGq+++    A +       + +slh+ F+++G +  ++ y+V  lr grs  + +v a+  ++    ++ + +sF+   +e++++    +  mP++p
  MMETSP1137-20121227|1205_1  33 YHYARQKAGRAFGGQLAAHCVQACTPLTRSGWMCNSLHMVFMRPGAMV-ETRYEVSILRRGRSITIFEVIALEGKEetrQLVKAIVSFHnvAAEEAGVAPllALPMPAAP 141
                 56788899*************************************876.689***********99999999876652226788899999765666666541134444554 PP

  == domain 2    score: 1.1 bits;  conditional E-value: 0.011
   TIGR00189 178 syvwir...areelpdderlhqvalaylSDltlletalsph 215
                 s++w+r   ++ + p   +   +ala+lSD+ +  t l++ 
  MMETSP1137-20121227|1205_1 165 SMYWVRweqQEXHGPSKLVGAAAALAFLSDMQFSLTPLRAL 205
                 566666221233334477788999*******9988877765 PP

  == domain 3    score: 52.8 bits;  conditional E-value: 2e-18
   TIGR00189 223 smaasldhsiwfhre.frvddwllykisspsAsgsrglveGklfdrdGrliasvaqEglvr 282
                  ++asldh+++fh +   + +wll+k++ ++A+ +r+ v+G++++  G+l+asvaq +l+r
  MMETSP1137-20121227|1205_1 235 RQTASLDHAVHFHSDsWTLSEWLLFKMEARWAGAGRAHVTGHIWSEXGVLLASVAQDALLR 295
                 5789***********9******************************************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (307 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        68  (0.0165773); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.26u 0.17s 00:00:00.43 Elapsed: 00:00:00.42
# Mc/sec: 964.78
//
Query:       MMETSP1137-20121227|1206_1  [L=283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (283 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       124  (0.0302292); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.17s 00:00:00.48 Elapsed: 00:00:00.51
# Mc/sec: 732.41
//
Query:       MMETSP1137-20121227|1207_1  [L=56]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        30  (0.00731351); expected 82.0 (0.02)
Passed bias filter:                       30  (0.00731351); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.13s 00:00:00.26 Elapsed: 00:00:00.26
# Mc/sec: 284.28
//
Query:       MMETSP1137-20121227|1208_1  [L=154]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (154 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       120  (0.029254); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.16s 00:00:00.31 Elapsed: 00:00:00.49
# Mc/sec: 414.82
//
Query:       MMETSP1137-20121227|1209_1  [L=44]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (44 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        33  (0.00804486); expected 82.0 (0.02)
Passed bias filter:                       30  (0.00731351); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.16s 00:00:00.27 Elapsed: 00:00:00.25
# Mc/sec: 232.30
//
Query:       MMETSP1137-20121227|1210_1  [L=377]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (377 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        49  (0.0119454); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.19s 00:00:00.49 Elapsed: 00:00:00.32
# Mc/sec: 1555.00
//
Query:       MMETSP1137-20121227|1211_1  [L=669]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (669 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       153  (0.0372989); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.17s 00:00:00.63 Elapsed: 00:00:00.49
# Mc/sec: 1802.06
//
Query:       MMETSP1137-20121227|1212_1  [L=372]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (372 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       100  (0.0243784); expected 82.0 (0.02)
Passed bias filter:                       97  (0.023647); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.17s 00:00:00.44 Elapsed: 00:00:00.39
# Mc/sec: 1258.97
//
Query:       MMETSP1137-20121227|1213_1  [L=422]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.4e-65  219.1   0.0    3.4e-65  218.6   0.0    1.1  1  TIGR00955 3a01204: pigment precursor permease
    6.7e-51  170.9   0.0    8.2e-51  170.6   0.0    1.0  1  TIGR00956 3a01205: pleiotropic drug resistance family protein
      1e-27   95.0   0.0    1.5e-27   94.4   0.0    1.1  1  TIGR03258 PhnT: 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT
    2.2e-27   94.0   0.0    3.2e-27   93.4   0.0    1.2  1  TIGR01188 drrA: daunorubicin resistance ABC transporter, ATP-binding protein
    7.3e-26   89.0   0.0      1e-25   88.5   0.0    1.1  1  TIGR01184 ntrCD: nitrate ABC transporter, ATP-binding proteins C and D
    7.6e-26   88.9   0.0    9.4e-26   88.6   0.0    1.1  1  TIGR02857 CydD: thiol reductant ABC exporter, CydD subunit
    1.4e-24   84.7   0.0    2.1e-24   84.1   0.0    1.1  1  TIGR03864 PQQ_ABC_ATP: ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system
    2.3e-24   83.8   0.0    3.5e-24   83.3   0.0    1.1  1  TIGR03873 F420-0_ABC_ATP: proposed F420-0 ABC transporter, ATP-binding protein
    3.1e-24   83.6   0.0    8.9e-23   78.8   0.0    2.1  1  TIGR02315 ABC_phnC: phosphonate ABC transporter, ATP-binding protein
    1.5e-23   81.2   0.0    6.5e-23   79.1   0.0    1.8  1  TIGR03608 L_ocin_972_ABC: putative bacteriocin export ABC transporter, lactococcin 972 group
    1.8e-23   81.1   0.0    4.1e-23   80.0   0.0    1.5  1  TIGR02982 heterocyst_DevA: ABC exporter ATP-binding subunit, DevA family
      2e-23   80.4   0.0    2.6e-23   80.0   0.0    1.1  1  TIGR00958 3a01208: antigen peptide transporter 2
    2.4e-23   80.7   0.0    3.6e-23   80.1   0.0    1.2  1  TIGR00968 3a0106s01: sulfate ABC transporter, ATP-binding protein
    3.3e-23   80.3   0.0    4.2e-23   80.0   0.0    1.2  1  TIGR03265 PhnT2: putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein
    2.6e-21   73.6   0.0    8.6e-14   48.8   0.0    2.1  2  TIGR01842 type_I_sec_PrtD: type I secretion system ATPase
    3.2e-21   73.1   0.0    4.9e-21   72.5   0.0    1.3  1  TIGR03375 type_I_sec_LssB: type I secretion system ATPase
      1e-20   72.2   0.0    1.5e-20   71.6   0.0    1.2  1  TIGR02673 FtsE: cell division ATP-binding protein FtsE
    4.6e-20   70.0   0.0      7e-20   69.4   0.0    1.2  1  TIGR01277 thiQ: thiamine ABC transporter, ATP-binding protein
    6.2e-20   69.5   0.0    9.2e-20   69.0   0.0    1.1  1  TIGR01189 ccmA: heme ABC exporter, ATP-binding protein CcmA
    1.4e-19   68.3   0.0    2.6e-19   67.4   0.0    1.4  1  TIGR00972 3a0107s01c2: phosphate ABC transporter, ATP-binding protein
    1.5e-19   68.3   0.0    2.6e-19   67.5   0.0    1.2  1  TIGR02142 modC_ABC: molybdate ABC transporter, ATP-binding protein
    2.6e-19   67.3   0.1    1.3e-11   42.0   0.0    2.1  2  TIGR03005 ectoine_ehuA: ectoine/hydroxyectoine ABC transporter, ATP-binding protein EhuA
    3.2e-19   66.8   0.2    2.5e-18   63.8   0.2    1.9  1  TIGR02868 CydC: thiol reductant ABC exporter, CydC subunit
    3.7e-19   66.8   0.0    5.3e-19   66.3   0.0    1.2  1  TIGR01187 potA: polyamine ABC transporter, ATP-binding protein
    5.9e-19   66.3   0.0    7.3e-11   39.8   0.0    2.1  2  TIGR02211 LolD_lipo_ex: lipoprotein releasing system, ATP-binding protein
    6.1e-19   65.9   0.0    8.4e-19   65.4   0.0    1.1  1  TIGR02204 MsbA_rel: ABC transporter, permease/ATP-binding protein
    1.6e-18   64.7   0.0    3.6e-18   63.6   0.0    1.5  1  TIGR01166 cbiO: cobalt ABC transporter, ATP-binding protein
    1.9e-18   64.3   0.0    2.6e-18   63.9   0.0    1.2  1  TIGR01288 nodI: nodulation ABC transporter NodI
    6.8e-18   62.3   0.0      9e-10   35.5   0.0    2.1  2  TIGR03797 NHLM_micro_ABC2: NHLM bacteriocin system ABC transporter, ATP-binding protein
    3.5e-17   60.5   0.0    7.7e-17   59.3   0.0    1.5  1  TIGR03410 urea_trans_UrtE: urea ABC transporter, ATP-binding protein UrtE
    7.2e-17   59.4   0.0    9.9e-17   58.9   0.0    1.1  1  TIGR02770 nickel_nikD: nickel import ATP-binding protein NikD
    8.6e-17   58.5   0.0    1.2e-16   58.0   0.0    1.1  1  TIGR01846 type_I_sec_HlyB: type I secretion system ATPase
    1.1e-16   59.1   0.0    2.1e-16   58.2   0.0    1.3  1  TIGR03771 anch_rpt_ABC: anchored repeat-type ABC transporter, ATP-binding subunit
    1.7e-16   58.2   0.0    2.6e-07   28.1   0.0    2.1  2  TIGR01978 sufC: FeS assembly ATPase SufC
    1.7e-16   58.4   0.0    3.6e-16   57.4   0.0    1.4  1  TIGR00960 3a0501s02: type II secretory pathway family protein
      2e-16   57.4   0.0    2.6e-16   57.0   0.0    1.1  1  TIGR02203 MsbA_lipidA: lipid A export permease/ATP-binding protein MsbA
    2.9e-16   57.2   0.1    1.5e-15   54.9   0.0    1.8  1  TIGR02314 ABC_MetN: D-methionine ABC transporter, ATP-binding protein
    5.7e-16   56.0   0.0    1.8e-10   37.8   0.0    2.1  2  TIGR03269 met_CoM_red_A2: methyl coenzyme M reductase system, component A2
    7.1e-16   56.3   0.0      1e-15   55.8   0.0    1.2  1  TIGR03522 GldA_ABC_ATP: gliding motility-associated ABC transporter ATP-binding subunit GldA
    7.7e-16   55.6   0.0    3.4e-07   27.0   0.0    2.1  2  TIGR03719 ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family
    1.4e-15   55.5   0.0    1.9e-15   55.0   0.0    1.1  1  TIGR03740 galliderm_ABC: lantibiotic protection ABC transporter, ATP-binding subunit
    2.1e-15   54.7   0.0    1.8e-14   51.7   0.0    1.9  1  TIGR02769 nickel_nikE: nickel import ATP-binding protein NikE
    7.1e-15   52.0   0.0    1.1e-14   51.4   0.0    1.2  1  TIGR03796 NHLM_micro_ABC1: NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein
    1.9e-14   51.5   0.1    3.3e-07   27.8   0.0    2.2  2  TIGR02324 CP_lyasePhnL: phosphonate C-P lyase system protein PhnL
    2.4e-14   51.4   0.0    8.4e-14   49.6   0.0    1.7  1  TIGR03411 urea_trans_UrtD: urea ABC transporter, ATP-binding protein UrtD
    1.4e-13   48.2   0.0    2.2e-13   47.5   0.0    1.2  1  TIGR01192 chvA: glucan exporter ATP-binding protein
    5.5e-13   44.5   0.0    7.1e-13   44.1   0.0    1.1  1  TIGR01257 rim_protein: rim ABC transporter
    1.9e-12   44.8   0.0    2.9e-12   44.2   0.0    1.2  1  TIGR01186 proV: glycine betaine/L-proline transport ATP binding subunit
    8.3e-12   42.1   0.0    1.1e-07   28.6   0.0    2.1  2  TIGR02633 xylG: D-xylose ABC transporter, ATP-binding protein
    3.1e-11   41.1   0.1    9.1e-10   36.3   0.0    2.1  1  TIGR02323 CP_lyasePhnK: phosphonate C-P lyase system protein PhnK
    1.6e-10   38.0   0.0    1.4e-05   21.7   0.0    2.0  2  TIGR01193 bacteriocin_ABC: ABC-type bacteriocin transporter
    1.6e-09   35.0   0.1    1.7e-08   31.7   0.1    2.0  1  TIGR03415 ABC_choXWV_ATP: choline ABC transporter, ATP-binding protein
    2.3e-09   33.1   0.0    2.5e-05   19.7   0.0    2.0  2  TIGR01271 CFTR_protein: cystic fibrosis transmembrane conductor regulator (CFTR)
    8.5e-07   25.6   0.1     0.0029   13.9   0.0    2.1  2  TIGR00954 3a01203: peroxysomal long chain fatty acyl transporter
    3.7e-06   22.5   0.0    4.4e-06   22.2   0.0    1.1  1  TIGR00957 MRP_assoc_pro: multi drug resistance-associated protein (MRP)
    2.8e-05   20.3   0.0      0.003   13.6   0.0    2.0  2  TIGR00630 uvra: excinuclease ABC subunit A
    0.00017   17.7   0.3    0.00051   16.2   0.1    1.7  2  TIGR00929 VirB4_CagE: type IV secretion/conjugal transfer ATPase, VirB4 family
     0.0054   14.3   0.2     0.0084   13.6   0.1    1.3  1  TIGR02322 phosphon_PhnN: phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN
     0.0063   14.2   0.1      0.019   12.7   0.0    1.7  1  TIGR02237 recomb_radB: DNA repair and recombination protein RadB
     0.0069   13.4   0.1       0.01   12.9   0.0    1.2  1  TIGR03819 heli_sec_ATPase: helicase/secretion neighborhood ATPase
  ------ inclusion threshold ------
      0.012   12.0   0.0      0.051    9.9   0.0    1.8  1  TIGR01194 cyc_pep_trnsptr: cyclic peptide transporter
      0.014   12.8   0.1      0.023   12.2   0.1    1.3  1  TIGR03263 guanyl_kin: guanylate kinase
      0.016   12.8   0.1      0.029   12.0   0.1    1.4  1  TIGR00231 small_GTP: small GTP-binding protein domain
      0.055    9.9   0.1       0.11    9.0   0.0    1.6  2  TIGR03498 FliI_clade3: flagellar protein export ATPase FliI


Domain annotation for each model (and alignments):
>> TIGR00955  3a01204: pigment precursor permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  218.6   0.0   5.2e-67   3.4e-65      24     301 ..     123     398 ..     102     418 .. 0.82

  Alignments for each domain:
  == domain 1    score: 218.6 bits;  conditional E-value: 5.2e-67
   TIGR00955  24 vkrleealarkk.....pekellknvsGvaksGellAvlGsSGaGKtTLlnalafrsekglkvsgdvllnGekveakemraisayvqqddlfiptltvrehLmfsahlrlkrrltkkekrerveevleelgLrkcadtrigvpgrvkglSgGerkRlalaselltdPilLfcDEPTsGLDsfsaasvvkvLkklaqkgkt.viltiHQPsselfelfdkiillaeGrvvylGspeeavkffselglpcPenynpadFvlkvlavepgseeesretiekicdaea 301
                 ++ + +++++kk       ++ll + sG+++ G +lA++G+SGaGKtTLln+l+  ++ g  + g v+l G++ + ++ ++  + vqq d +   l+ r+h+ +  ++  +   tk e+r  v + +     ++c++t+ g +   kglSgG+++Rl+la  l + P+++f+DEPTsGLD++ aa+++  Lk++a+  ++ +++tiHQPs  +f+ fdk+++l +Gr +ylG + ++v+f+++ g p+  n npadF+l+++ ++ g+ e   ++++    +++
  MMETSP1137-20121227|1213_1 123 KNCTFTVMVKKKgekgkVPRKLLDDLSGTVEAGSVLAIMGPSGAGKTTLLNMLMLEDTGGDPR-GVVALGGNEFTLDTYKRHACVVQQTDTLWWPLSPRDHIGYAVRMYQPT-FTKAEQRDLVVDWV-----ESCKNTKAG-NVFFKGLSGGQKRRLSLAIALSKRPHVVFLDEPTSGLDAAAAANIMFYLKEVAKAESIaILCTIHQPSTAVFNGFDKVLFLTSGRPAYLGPAAQLVSFLERAGKPVAPNANPADFMLDLINKDFGHPEVADAVVATWASEKK 398
                 333444455555666665578*********************************999988877.78*************************************987666555.45555555555544.....69*******.5558**************************************************99983569**********************************************************9988877666444444333333 PP

>> TIGR00956  3a01205: pleiotropic drug resistance family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  170.6   0.0   1.3e-52   8.2e-51     703    1022 ..      63     377 ..      21     405 .. 0.79

  Alignments for each domain:
  == domain 1    score: 170.6 bits;  conditional E-value: 1.3e-52
   TIGR00956  703 lvfkkgelkkakkkeeeseskkndieagevlkstdltdeseevneeveeekesgeeifewrdltyevkikke..k....rvlLdevdGwvkPGkltALmGasGAGkttLlnvLaeRvttGvitegdrlvngrk.ldssFqRsiGYvqqqDlHletstvreaLrfsAylRqpkevskkekneyveevikllelesyadAvvGvpGe.GLnveqRkrltigveLvAkPklllFlDePtsGLDsqtawsivkllrklada.GqailCtiHqPsailleeFDrLLllqkGGktvYfGdlGensktlieYFekhGaekcpeeanPAewmLevig 1022
                  l +      +   +++ + s k+ ++     + tdl+ + +++ ++++  k+++ + f++++ t++v +kk+  k    r+lLd+++G v+ G++ A+mG sGAGkttLln+L    t+G    g +  +g++   ++++R    vqq D        r+ + ++ ++ qp   +k+e+ +    v++ +e  s ++   G +   GL+  q++rl++++ L  +P  ++FlDePtsGLD+ +a+ i+  l+++a+a   ailCtiHqPs  +++ FD++L+l  G + +Y G+    +++l+ + e+ G  ++ ++anPA++mL+ i 
  MMETSP1137-20121227|1213_1   63 LKKPTAFPDESVSASHGTGSDKKKVAPAALHPATDLKPKIDSIVKQSSFSKKTTPADFQFKNCTFTVMVKKKgeKgkvpRKLLDDLSGTVEAGSVLAIMGPSGAGKTTLLNMLMLEDTGGDPR-GVVALGGNEfTLDTYKRHACVVQQTDTLWWPLSPRDHIGYAVRMYQPT-FTKAEQRD---LVVDWVE--SCKNTKAGNVFFkGLSGGQKRRLSLAIALSKRP-HVVFLDEPTSGLDAAAAANIMFYLKEVAKAeSIAILCTIHQPSTAVFNGFDKVLFLTSG-RPAYLGP----AAQLVSFLERAGK-PVAPNANPADFMLDLIN 377 
                  333333333333344445666677888888889999988888877777777788899**********99875222445599*********************************998988888.6655555551568**********************************7.56666654...4566665..4555555766544********************.89**************************97256***********************988.******8....5679******996.57778*********986 PP

>> TIGR03258  PhnT: 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.4   0.0   2.3e-29   1.5e-27      21     227 ..     142     351 ..     135     360 .. 0.90

  Alignments for each domain:
  == domain 1    score: 94.4 bits;  conditional E-value: 2.3e-29
   TIGR03258  21 rvvlddlsleieaGellallGksGsGkttllravaGfvkadG....GrllvadrdlthlppykrnlallvqnyalfphlkveenvafGlrark..qskaliaervadalklvqlsdaaarlpaqlsGGqqqrvalaralvvrpdvllldeplsaldaqlrasvveelkalhrelpeltvlyvthdrdealv.ladkillmkeGslialGetral 227
                 r +lddls ++eaG +la++G+sG+Gkttll ++   ++  G    G +++++++ t l  ykr  +++ q  +l+  l   + + + +r  +   +ka+  + v d +   + + a++ + + lsGGq++r++la al  rp+v++ldep s lda   a+++  lk + +    +++l+  h+ + a+    dk+l++  G+ + lG + +l
  MMETSP1137-20121227|1213_1 142 RKLLDDLSGTVEAGSVLAIMGPSGAGKTTLLNMLM--LEDTGgdprGVVALGGNEFT-LDTYKRHACVVQQTDTLWWPLSPRDHIGYAVRMYQptFTKAEQRDLVVDWVESCKNTKAGNVFFKGLSGGQKRRLSLAIALSKRPHVVFLDEPTSGLDAAAAANIMFYLKEVAK-AESIAILCTIHQPSTAVFnGFDKVLFLTSGRPAYLGPAAQL 351
                 6689***************************9985..33333367899*******99.789*****************************97622568888888****************************************************************9976.5789*******9988876157************99998887 PP

>> TIGR01188  drrA: daunorubicin resistance ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   93.4   0.0     5e-29   3.2e-27       9     182 ..     145     321 ..     141     358 .. 0.84

  Alignments for each domain:
  == domain 1    score: 93.4 bits;  conditional E-value: 5e-29
   TIGR01188   9 vdgvnlkveegevfglLGPnGAGKtttikmLttllkPdsGt....arvaGyDvvrepdevRrsigvvpqkasvdedLtarenlellgelyglpkkeaeer..aeellelvelkeaadkkvktysgGmrrrlelaasliaqPevlfLDEPtiGLDprtrraiwdlieelkke.gvtilltth 182
                 +d+++  ve+g+v++++GP GAGKtt+++mL   l+ ++G     + + G + +   d+ +r+  vv q+ ++   L+ r+++    ++y    ++ae+r  + + +e  + ++a +   k +sgG++rrl+la++l ++P+v+fLDEPt+GLD+ ++++i  +++e+ k+  ++il t h
  MMETSP1137-20121227|1213_1 145 LDDLSGTVEAGSVLAIMGPSGAGKTTLLNMLM--LEDTGGDprgvVALGGNEFTL--DTYKRHACVVQQTDTLWWPLSPRDHIGYAVRMYQPTFTKAEQRdlVVDWVESCKNTKAGNVFFKGLSGGQKRRLSLAIALSKRPHVVFLDEPTSGLDAAAAANIMFYLKEVAKAeSIAILCTIH 321
                 7899999***********************95..666665411114455777776..5678999**************************866555555522778899999999******************************************************9994555555555 PP

>> TIGR01184  ntrCD: nitrate ABC transporter, ATP-binding proteins C and D
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.5   0.0   1.6e-27     1e-25       1     198 [.     145     347 ..     145     362 .. 0.89

  Alignments for each domain:
  == domain 1    score: 88.5 bits;  conditional E-value: 1.6e-27
   TIGR01184   1 lkdvdleikkgefislighsgcgkstllnliaglek..ptsgavilegkeitepgpdrm.vvfqnysllpw.ltvrenialavdavlrdlskserreiveehielvglreaadkrpeqlsggmkqrvaiaralsirpklllldepfgaldaltreelqekllkiveearvtvlmvthdvdeallls.drvvmltngpaakige 198
                 l+d++ +++ g  ++++g sg gk+tlln++   +      g v l g+e t    +r   v q+   l w l+ r+ i  av + +++ +k+e+r++v + +e    ++a +   + lsgg k+r+++a als rp++++ldep   lda +  ++   l ++++ +++++l   h+   a++   d+v++lt+g  a++g 
  MMETSP1137-20121227|1213_1 145 LDDLSGTVEAGSVLAIMGPSGAGKTTLLNMLMLEDTggDPRGVVALGGNEFTLDTYKRHaCVVQQTDTLWWpLSPRDHIGYAVRMYQPTFTKAEQRDLVVDWVESCKNTKAGNVFFKGLSGGQKRRLSLAIALSKRPHVVFLDEPTSGLDAAAAANIMFYLKEVAKAESIAILCTIHQPSTAVFNGfDKVLFLTSGRPAYLGP 347
                 6788899**********************9875554114689********9998888742455555555553899*************************************************************************************************************855*********9999885 PP

>> TIGR02857  CydD: thiol reductant ABC exporter, CydD subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.6   0.0   1.5e-27   9.4e-26     336     519 ..     143     325 ..      89     337 .. 0.79

  Alignments for each domain:
  == domain 1    score: 88.6 bits;  conditional E-value: 1.5e-27
   TIGR02857 336 palkevsltvepgelvalvGaSGaGKstllklll..gfvepteGailvngaelaeldadswrkqiawvpQkPllf.egtvaenirlarkdaseaevkealeragldelvkalpqgleteiGer.gagLSgGqrqRlaLArallrdapllllDEPtahLDaeteaevlealrelaegrtv..llvaHrlal 519
                 + l+++s tve+g+++a++G+SGaGK+tll++l+   +    +G ++++g+   e++ d+++++   v+Q+ +l  + + ++ i  a +  + +   +a +r  + + v++ +   +t+ G+   +gLSgGq++Rl+LA al +  +++ lDEPt+ LDa+++a+++  l+e+a+++++  l   H++++
  MMETSP1137-20121227|1213_1 143 KLLDDLSGTVEAGSVLAIMGPSGAGKTTLLNMLMleDTGGDPRGVVALGGN---EFTLDTYKRHACVVQQTDTLWwPLSPRDHIGYAVRMYQPT-FTKAEQRDLVVDWVESCK---NTKAGNVfFKGLSGGQKRRLSLAIALSKRPHVVFLDEPTSGLDAAAAANIMFYLKEVAKAESIaiLCTIHQPST 325
                 478999*************************9862245555689******9...899999**********998853678888888777776666.566666666666666665...88898863689**********************************************97665411344576654 PP

>> TIGR03864  PQQ_ABC_ATP: ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.1   0.0   3.3e-26   2.1e-24      14     220 ..     142     352 ..     136     360 .. 0.87

  Alignments for each domain:
  == domain 1    score: 84.1 bits;  conditional E-value: 3.3e-26
   TIGR03864  14 rralddvsltvakgefvaLLGpnGaGkstLfsllt..rLyeakegeikvaGldlrrapkealarlGvvfqqstlDldlsveqnlryhaaLhG..lsraeaeerieealarlglaeraeekvreLnGGhrrrveiarallhePklLLlDeatvGLDiesraalveevrelvreeglsvLWathlvde..veaedrlvvlhkGkvlaqGaaaela 220
                 r+ ldd+s tv+ g++ a++Gp GaGk+tL+++l        ++g +++ G +++ ++ +  ++  vv q  tl   ls +  + y   +    +++ae ++ + + ++  + ++  +   + L+GG++rr+ +a al  +P+++ lDe+t GLD+++ a+++ +++e++++e++++L + h       +  d+++ l +G+ +  G aa+l+
  MMETSP1137-20121227|1213_1 142 RKLLDDLSGTVEAGSVLAIMGPSGAGKTTLLNMLMleDTGGDPRGVVALGGNEFTLDTYK--RHACVVQQTDTLWWPLSPRDHIGYAVRMYQptFTKAEQRDLVVDWVESCKNTKAGNVFFKGLSGGQKRRLSLAIALSKRPHVVFLDEPTSGLDAAAAANIMFYLKEVAKAESIAILCTIHQPSTavFNGFDKVLFLTSGRPAYLGPAAQLV 352
                 789****************************987511445567999*****999988766..78899*********************998612556666666888999999888889999*************************************************************86541156779********999999999886 PP

>> TIGR03873  F420-0_ABC_ATP: proposed F420-0 ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.3   0.0   5.4e-26   3.5e-24      14     224 ..     142     351 ..     132     356 .. 0.87

  Alignments for each domain:
  == domain 1    score: 83.3 bits;  conditional E-value: 5.4e-26
   TIGR03873  14 rlivddvdvtaPaGaltgllGPnGsGkstllrlla..GllapdaGevdlagadlkalsrrararrvalveqdsdaevplsvrdvvalGriPhrslfaadsdedaevvdralarvelssladrdlstlsGGerqrvhlaralaqePklllldePtnhldvsaqlellalvrela.aegvtvvvalhdlnlaasv.cdhvvvldgGrvvaaGppaev 224
                 r ++dd+  t+ aG++ +++GP G+Gk+tll++l         +G v l+g++ +  + ++ a    +v+q  +   pls rd +      ++  f+       ++v   + + + ++  +  ++ lsGG+++r  la al+++P++++ldePt  ld +a  +++  ++e a ae ++++ ++h  + a+    d+v+ l +Gr +  Gp+a++
  MMETSP1137-20121227|1213_1 142 RKLLDDLSGTVEAGSVLAIMGPSGAGKTTLLNMLMleDTGGDPRGVVALGGNEFTLDTYKRHA---CVVQQTDTLWWPLSPRDHIGYAVRMYQPTFTKAE--QRDLVVDWVESCKNTKAGNVFFKGLSGGQKRRLSLAIALSKRPHVVFLDEPTSGLDAAAAANIMFYLKEVAkAESIAILCTIHQPSTAVFNgFDKVLFLTSGRPAYLGPAAQL 351
                 7899***************************987511455567999****9997665555555...5789999999**********99999***999876..4556677889999999999**************************************************99567889999*****99986527**********9999998765 PP

>> TIGR02315  ABC_phnC: phosphonate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.8   0.0   1.4e-24   8.9e-23      16     233 ..     143     351 ..     130     354 .. 0.82

  Alignments for each domain:
  == domain 1    score: 78.8 bits;  conditional E-value: 1.4e-24
   TIGR02315  16 qalknvnleikkGelvaviGlsGaGkstllrsinrlveissg....sillegkevtklkkkelrklrkkigmifqeynlierltvlenvLsgrlgakstlksllglfseedke.kAlelLervglaelaakradqLsGGqqqRvaiaRalaqqpklilaDEPiasLDpksskqvmdllkrinkekgitvivnlHqvdlak.kyadrivglkageivfdgassel 233
                 + l++++ +++ G ++a++G+sGaGk+tll ++  + e++ g     + l g+e t      l + +++  ++        +++ l   Ls+r     +++++  +f++++++   ++ +e    ++  +   + LsGGq+ R+++a al ++p++++ DEP++ LD +++ ++m +lk+++k + i++++++Hq + a  +  d+++ l +g+  + g++++l
  MMETSP1137-20121227|1213_1 143 KLLDDLSGTVEAGSVLAIMGPSGAGKTTLLNML--MLEDTGGdprgVVALGGNEFT------LDTYKRHACVVQ-------QTDTLWWPLSPRDHIGYAVRMYQPTFTKAEQRdLVVDWVESCKNTKAGNVFFKGLSGGQKRRLSLAIALSKRPHVVFLDEPTSGLDAAAAANIMFYLKEVAKAESIAILCTIHQPSTAVfNGFDKVLFLTSGRPAYLGPAAQL 351
                 67999999*********************9987..445555511114444444444......666666655444.......45677788999999999999999999988765167899999999999999****************************************************************99886255799999999998888887765 PP

>> TIGR03608  L_ocin_972_ABC: putative bacteriocin export ABC transporter, lactococcin 972 group
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.1   0.0     1e-24   6.5e-23       9     204 ..     140     335 ..     129     337 .. 0.82

  Alignments for each domain:
  == domain 1    score: 79.1 bits;  conditional E-value: 1e-24
   TIGR03608   9 kdkeilkklslkiekGelvaivGesGsGKstlLnilgllek..kdsgkvilegkekaklkskkaskllreklgylFqnfaLlenetveenlelalklkkkskkekekkkkevlekvglekklkkkiyelsgGekqRvalarillkeselilADEPtgsLDkknreevlellkelkeegktiiivt.Hdp..evaekadrvi 204
                   +++l++ls ++e+G+++ai+G sG+GK+tlLn+l l ++    +g v l g+e  +l++ k +  + ++   l+  + L   + + + +++       +k e+++++++ +e+ + +k  +     lsgG+k R++la +l k +++++ DEPt+ LD+   ++++ +lke+++++ + i+ t H+p  +v + +d+v+
  MMETSP1137-20121227|1213_1 140 VPRKLLDDLSGTVEAGSVLAIMGPSGAGKTTLLNMLMLEDTggDPRGVVALGGNE-FTLDTYKRHACVVQQTDTLW--WPLSPRDHIGYAVRM--YQPTFTKAEQRDLVVDWVESCKNTKAGNVFFKGLSGGQKRRLSLAIALSKRPHVVFLDEPTSGLDAAAAANIMFYLKEVAKAESIAILCTiHQPstAVFNGFDKVL 335
                 45699******************************98877622457889999988.77888888888877777777..566677777776655..66677888999999******9999999999999**********************************************999998777664765114556666666 PP

>> TIGR02982  heterocyst_DevA: ABC exporter ATP-binding subunit, DevA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.0   0.0   6.3e-25   4.1e-23      13     202 ..     137     323 ..     130     341 .. 0.87

  Alignments for each domain:
  == domain 1    score: 80.0 bits;  conditional E-value: 6.3e-25
   TIGR02982  13 kgelrkqvlfdinleiepgeiviltGpsGsGkttlltligglrsvqeGelkvlgkelkgasekelvqvrrkiGyifqahnllesltaeqnvrmalelke.klsakeakakaeelleavgleerldykpedlsgGqkqrvaiaralvarPklvladePtaaldkksgrevvellqklareqgttillvthdn 202
                 kg++ +++l d++ ++e+g ++ + GpsG+Gkttll+++     +  G+ +  g    g +e +l   +r+  ++ q+  l   l  ++ +  a+ + + +++++e+++ + +++e+    +  +   + lsgGqk+r+++a al +rP++v+ dePt+ ld+ ++ +++  l+++a+ ++ +il   h +
  MMETSP1137-20121227|1213_1 137 KGKVPRKLLDDLSGTVEAGSVLAIMGPSGAGKTTLLNMLML-EDT-GGDPR--GVVALGGNEFTLDTYKRHACVVQQTDTLWWPLSPRDHIGYAVRMYQpTFTKAEQRDLVVDWVESCKNTKAGNVFFKGLSGGQKRRLSLAIALSKRPHVVFLDEPTSGLDAAAAANIMFYLKEVAKAESIAILCTIHQP 323
                 788999******************************98853.333.33332..33345778899999****************************996516889999999****************************************************************************99975 PP

>> TIGR00958  3a01208: antigen peptide transporter 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.0   0.0     4e-25   2.6e-23     494     700 ..     142     351 ..      96     355 .. 0.84

  Alignments for each domain:
  == domain 1    score: 80.0 bits;  conditional E-value: 4e-25
   TIGR00958 494 kpvlkdLtftlepGevvalVGPsGsGKStvaal..lenlYqPtgGqvllDgkplkeydhkylhrkvalVgqEPvlf.sgsvreNiaYGltktedeevtaaakaanahdFiselekgydtevgekGsqlsgGqkqriAiARALvrkPrvLiLDeAtSALDa....eveqllqesksaksrtvlliahrLstv..ekadkilvlkkgsvvelGthkqL 700
                 +++l dL+ t+e+G+v a+ GPsG GK t   +  le       G v l g+   e+    ++r+  +V+q   l+   s r+ i Y ++ ++  + t a ++  + d+++  +++   +v  kG  lsgGqk r+ +A AL ++P v+ LDe tS LDa    ++   l+e  +a+s ++l   h+ st+  +  dk+l+l+ g+   lG  +qL
  MMETSP1137-20121227|1213_1 142 RKLLDDLSGTVEAGSVLAIMGPSGAGKTTLLNMlmLEDTGGDPRGVVALGGN---EFTLDTYKRHACVVQQTDTLWwPLSPRDHIGYAVRMYQ-PTFTKAEQRDLVVDWVESCKNTKAGNVFFKG--LSGGQKRRLSLAIALSKRPHVVFLDEPTSGLDAaaaaNIMFYLKEVAKAESIAILCTIHQPSTAvfNGFDKVLFLTSGRPAYLGPAAQL 351
                 5789*************************98651156777677789999997...5667889999999***988862679********99886.5688889999999**************9999..9********************************87666666778899999**********998533678*******9988887777777 PP

>> TIGR00968  3a0106s01: sulfate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.1   0.0   5.6e-25   3.6e-23      14     218 ..     143     351 ..     130     357 .. 0.88

  Alignments for each domain:
  == domain 1    score: 80.1 bits;  conditional E-value: 5.6e-25
   TIGR00968  14 qalddvdlevktGslvallGpsGsGkstllrviaGlek..pdsGrilleGrdvtrvkvrdreiGfvfqhyalfkhltvrdniafGleirkk..dkakikakveellelvqleklgdrypsqlsGGqrqrvalaralavepqvllldepfgaldakvrkelrawlrklhdevkvttvfvthdqeeal.evadrivvlekGkieqvgsaeev 218
                 + ldd++ +v+ Gs+ a++GpsG+Gk+tll ++   +   +  G + l G++ t +++ +r+   v q  +l+  l+ rd i + +++ +   +ka+ ++ v + +e  + +k g+ + + lsGGq++r++la al+  p+v++ldep + lda    ++  +l+++ +  +++ +   h+ + a+ +  d++  l  G+   +g a+++
  MMETSP1137-20121227|1213_1 143 KLLDDLSGTVEAGSVLAIMGPSGAGKTTLLNMLMLEDTggDPRGVVALGGNEFT-LDTYKRHACVVQQTDTLWWPLSPRDHIGYAVRMYQPtfTKAEQRDLVVDWVESCKNTKAGNVFFKGLSGGQKRRLSLAIALSKRPHVVFLDEPTSGLDAAAAANIMFYLKEVAKAESIAILCTIHQPSTAVfNGFDKVLFLTSGRPAYLGPAAQL 351
                 569999************************998754442145789999998887.7888999*************************99652267888899******************************************************************9999998888889888875367899999999998877777665 PP

>> TIGR03265  PhnT2: putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.0   0.0   6.5e-25   4.2e-23      18     199 ..     143     327 ..     100     351 .. 0.88

  Alignments for each domain:
  == domain 1    score: 80.0 bits;  conditional E-value: 6.5e-25
   TIGR03265  18 talkdislsvkkgelvclLGPsGCGkttLLriiaGLek..qdaGaillggrditrlppqkrdyGivfqsYaLfPnltvaeniayGLk..nkklkreevaerveelLelvglsgseekyPgqlsGGqqqrvaLaralalsPglLLLDePlsaLDakvrekLreelkklqrklgvttimvthdqeeal 199
                 + l+d+s +v++g +++++GPsG GkttLL ++   ++    +G ++lgg++ t l + kr   +v q+ +L+  l  ++ i+y ++  +   +++e+++ v  ++e    +++++ +   lsGGq++r++La al  +P++++LDeP s LDa   +++   lk++ +  +++ +   h+   a+
  MMETSP1137-20121227|1213_1 143 KLLDDLSGTVEAGSVLAIMGPSGAGKTTLLNMLMLEDTggDPRGVVALGGNEFT-LDTYKRHACVVQQTDTLWWPLSPRDHIGYAVRmyQPTFTKAEQRDLVVDWVESCKNTKAGNVFFKGLSGGQKRRLSLAIALSKRPHVVFLDEPTSGLDAAAAANIMFYLKEVAKAESIAILCTIHQPSTAV 327
                 6799***************************987444422568*********98.67889************************97611556789999999******************************************************************9999998888888766665 PP

>> TIGR01842  type_I_sec_PrtD: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.9   0.0   9.2e-08   5.9e-06     331     365 ..     142     176 ..     110     202 .. 0.79
   2 !   48.8   0.0   1.3e-15   8.6e-14     453     541 ..     261     352 ..     237     355 .. 0.88

  Alignments for each domain:
  == domain 1    score: 22.9 bits;  conditional E-value: 9.2e-08
   TIGR01842 331 kktlkgisfalkaGealaiiGpsgsGkssLarllv 365
                 +k l ++s +++aG++lai+Gpsg+Gk++L  +l+
  MMETSP1137-20121227|1213_1 142 RKLLDDLSGTVEAGSVLAIMGPSGAGKTTLLNMLM 176
                 47899*************************99986 PP

  == domain 2    score: 48.8 bits;  conditional E-value: 1.3e-15
   TIGR01842 453 aaLsgGqrqRiaLaRalygdPklvvLDePnanLDeeGeqalakalkelkarkitvvvit.hrps..llelvdkilvlkdGalkafGereevl 541
                 ++LsgGq+ R++La al   P++v LDeP + LD++  + ++  lke+ +++ ++++ t h+ps  + +  dk+l l  G+ + +G + +++
  MMETSP1137-20121227|1213_1 261 KGLSGGQKRRLSLAIALSKRPHVVFLDEPTSGLDAAAAANIMFYLKEVAKAESIAILCTiHQPStaVFNGFDKVLFLTSGRPAYLGPAAQLV 352
                 58*********************************************98888887776648775337899**************99998876 PP

>> TIGR03375  type_I_sec_LssB: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.5   0.0   7.7e-23   4.9e-21     457     692 ..     111     355 ..      98     359 .. 0.81

  Alignments for each domain:
  == domain 1    score: 72.5 bits;  conditional E-value: 7.7e-23
   TIGR03375 457 lsreklkGeielknvsfkY....peee....kaaLknvslkikpGekvaiiGriGsGKstllklll..glyepteGsvlldgvdirqidpadlrrnigyvpqdvtLfyG.tlrdNialgapaaedeellraaelaGvtefvkkhpkGldlqigerGesLSgGQrqavalaRallkdppillLDEPtsalDnsseekllerLkella.dkTlvlvt.Hr..tslLelvdriivldkGrivadGpkdevleal 692
                 +s+++   ++++kn++f+     ++e+    ++ L+++s ++++G+ +ai+G  G+GK+tll++l+        +G v l g + +     + +r+  +v+q  tL    + rd i ++ + + + +  +a ++  v + v++ ++     +  +G  LSgGQ++ ++la al k p++++LDEPts lD+++ ++++  Lke+++ +   +l t H+  t++ +  d+++ l++Gr    Gp +++++ l
  MMETSP1137-20121227|1213_1 111 FSKKTTPADFQFKNCTFTVmvkkKGEKgkvpRKLLDDLSGTVEAGSVLAIMGPSGAGKTTLLNMLMleDTGGDPRGVVALGGNEFT---LDTYKRHACVVQQTDTLWWPlSPRDHIGYAVR-MYQPTFTKAEQRDLVVDWVESCKNTKAGNVFFKG--LSGGQKRRLSLAIALSKRPHVVFLDEPTSGLDAAAAANIMFYLKEVAKaESIAILCTiHQpsTAVFNGFDKVLFLTSGRPAYLGPAAQLVSFL 355
                 56666666777777777653322222222225679***************************998722345567899***998775...45678999999**9999875389****99988.5667899***********************9988..***********************************************965555666658733568999***********99999999988766 PP

>> TIGR02673  FtsE: cell division ATP-binding protein FtsE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.6   0.0   2.3e-22   1.5e-20      15     198 ..     142     324 ..     130     341 .. 0.85

  Alignments for each domain:
  == domain 1    score: 71.6 bits;  conditional E-value: 2.3e-22
   TIGR02673  15 veaLkdvslkiekgeflfltGasGaGkttllklllgaek..psrGevevagedvarlrerelpllRrkigvvfqDfkllkdrtvlenvalalevrgkkeeeiqkr..veevlelvgledkakalpeelsgGeqqRvaiaRaivnkPelllaDePtGnlDdelserildllkelnk.rGttvivathdee 198
                  + L+d+s ++e+g++l ++G+sGaGkttll++l+  ++    rG v + g++++      l + +r+  vv q   l    +  + +  a+++ + + ++ ++r  v + +e    ++  +++ + lsgG + R ++a a+ ++P+++  DePt  lD++ +++i+  lke+ k + ++++ + h+ +
  MMETSP1137-20121227|1213_1 142 RKLLDDLSGTVEAGSVLAIMGPSGAGKTTLLNMLMLEDTggDPRGVVALGGNEFT------LDTYKRHACVVQQTDTLWWPLSPRDHIGYAVRMYQPTFTKAEQRdlVVDWVESCKNTKAGNVFFKGLSGGQKRRLSLAIALSKRPHVVFLDEPTSGLDAAAAANIMFYLKEVAKaESIAILCTIHQPS 324
                 57899*****************************9988722469*******9885......778999*********************9999887766555555433778888888888889999**********************************************997625788888889865 PP

>> TIGR01277  thiQ: thiamine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.4   0.0   1.1e-21     7e-20      18     208 ..     149     343 ..     142     348 .. 0.88

  Alignments for each domain:
  == domain 1    score: 69.4 bits;  conditional E-value: 1.1e-21
   TIGR01277  18 dlsveaGervailGesGaGkstllnliaGfle..pasGeikvndkdhtrsapyerpvsmlfqennlfahltvrqniglGlk...pglklnavqkekvedvarqvGiadylerlpeelsGGqrqrvalarclvrekpillldepfsaldpklreemlalvkkladekkltlllvthslsdaa.aiasqvvvvedGkik 208
                 + +veaG  +ai+G+sGaGk+tlln++    +    +G + + +++  ++  y+r   ++ q + l+  l+ r+ ig  ++   p++  +a+q++ v+d  ++   ++  + + + lsGGq++r++la  l +   +++ldep s ld +   +++  +k++a+ + +++l   h++s a+ +  ++v++++ G+ +
  MMETSP1137-20121227|1213_1 149 SGTVEAGSVLAIMGPSGAGKTTLLNMLMLEDTggDPRGVVALGGNE-FTLDTYKRHACVVQQTDTLWWPLSPRDHIGYAVRmyqPTF-TKAEQRDLVVDWVESCKNTKAGNVFFKGLSGGQKRRLSLAIALSKRPHVVFLDEPTSGLDAAAAANIMFYLKEVAKAESIAILCTIHQPSTAVfNGFDKVLFLTSGRPA 343
                 558**********************986554411346888887765.56889*************************9985222554.6899************9999999***********************9******************************************998636789*****999866 PP

>> TIGR01189  ccmA: heme ABC exporter, ATP-binding protein CcmA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.0   0.0   1.4e-21   9.2e-20      13     187 ..     142     322 ..     135     329 .. 0.86

  Alignments for each domain:
  == domain 1    score: 69.0 bits;  conditional E-value: 1.4e-21
   TIGR01189  13 rvlleglsfelaaGealvveGpnGiGKttLLRila..GLlkpesGevelndkelaeqrdelaeellylgHldglKaeLsalEnLkfyaallq.....seqk.tveealekvgLsgledlpvaqLsAGqkrRlalarLllskaplWiLDEPttalDkegvellaellaaHlargGivllathqd 187
                 r+ll +ls ++ aG +l++ Gp G+GKttLL +l          G v+l ++e +   d+++++   +  +d+l   Ls ++ + +  ++ q     +eq+  v + +e+   +++ ++ ++ Ls GqkrRl+la  l ++  +  LDEPt  lD+++ + ++  l++ ++   i++l t ++
  MMETSP1137-20121227|1213_1 142 RKLLDDLSGTVEAGSVLAIMGPSGAGKTTLLNMLMleDTGGDPRGVVALGGNEFTL--DTYKRHACVVQQTDTLWWPLSPRDHIGYAVRMYQptftkAEQRdLVVDWVESCKNTKAGNVFFKGLSGGQKRRLSLAIALSKRPHVVFLDEPTSGLDAAAAANIMFYLKEVAKAESIAILCTIHQ 322
                 689999*************************998511333456899****888654..56999*******************998877766655554455568999*****************************99999999******************************9999987443 PP

>> TIGR00972  3a0107s01c2: phosphate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.4   0.0     4e-21   2.6e-19      16     230 ..     144     351 ..     137     358 .. 0.77

  Alignments for each domain:
  == domain 1    score: 67.4 bits;  conditional E-value: 4e-21
   TIGR00972  16 alkdvnleikknkvtaliGpsGcGkstllrslnrlndlveevrieGkvllegkdiydkkldvvelrkkvGmvfqkpnp.fpmsiydnvayglrlkg.ikdkkeldeiveesLkkaalwdevkdklkksalsLsGGqqqrlciaralavePevlLlDePtsaLDpiatekieeliqeLkkkytivivt..hnmqqaa.rvsdktaffleGelveegeteqi 230
                  l+d++  +++ +v a++GpsG+Gk+tll  l  l+d+  +   +G v l g++ + +     +++++  +v q+ +  +p s  d + y++r+ + + +k+e +++v + +++           +    +LsGGq++rl++a al+ +P+v+ lDePts LD+ a+++i   ++e++k   i i    h+ + a     dk+ f+++G+    g+++q+
  MMETSP1137-20121227|1213_1 144 LLDDLSGTVEAGSVLAIMGPSGAGKTTLLNML-MLEDT--GGDPRGVVALGGNEFTLD-----TYKRHACVVQQTDTLwWPLSPRDHIGYAVRMYQpTFTKAEQRDLVVDWVESCKNT----KAGNVFFKGLSGGQKRRLSLAIALSKRPHVVFLDEPTSGLDAAAAANIMFYLKEVAKAESIAILCtiHQPSTAVfNGFDKVLFLTSGRPAYLGPAAQL 351
                 577888889999****************9877.45555..46778******9987655.....567777888888776358************9864667777777777766654332....233455679**********************************************9987776665114444443133588888888887766666665 PP

>> TIGR02142  modC_ABC: molybdate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.5   0.0     4e-21   2.6e-19      15     221 ..     147     353 ..     138     367 .. 0.84

  Alignments for each domain:
  == domain 1    score: 67.5 bits;  conditional E-value: 4e-21
   TIGR02142  15 dvdlelpgkgvtalFGrsGsGktslirliaGLtrpdegeivldgevlqdsrkkiilppekRrvgyvFqeArLFpHlsvrenLrYGlkraraeerrise.ekvielLgiehLl...eRlpgkLsGGekqRvaigRAlLssPeLLlmDePLaaLDekrkkeilPyLerlsaelkiPilyvsHsld.evarladrvvvledGrvkaagkleevla 221
                 d++ ++++  v a+ G sG+Gkt+l++++   +  + g     g v   + ++ +l + kR+  +v q  +L+  ls r+ + Y ++  +++ +++++ + v++ +   +     +   + LsGG k R +++ Al  +P+++ +DeP + LD    ++i+ yL+++++  +i il   H+ +  v    d+v+ l  Gr +  g+++++++
  MMETSP1137-20121227|1213_1 147 DLSGTVEAGSVLAIMGPSGAGKTTLLNMLM--LEDTGGD--PRGVVAL-GGNEFTLDTYKRHACVVQQTDTLWWPLSPRDHIGYAVRMYQPTFTKAEQrDLVVDWVESCKNTkagNVFFKGLSGGQKRRLSLAIALSKRPHVVFLDEPTSGLDAAAAANIMFYLKEVAKAESIAILCTIHQPStAVFNGFDKVLFLTSGRPAYLGPAAQLVS 353
                 5778999999*****************974..3334443..3455544.555699********************************9999998886515566655443333000334578***********************************************************9862688899***********99999999876 PP

>> TIGR03005  ectoine_ehuA: ectoine/hydroxyectoine ABC transporter, ATP-binding protein EhuA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.5   0.1   9.2e-08   5.9e-06      14      50 ..     143     179 ..     131     230 .. 0.85
   2 !   42.0   0.0   2.1e-13   1.3e-11     119     225 ..     235     342 ..     194     354 .. 0.86

  Alignments for each domain:
  == domain 1    score: 23.5 bits;  conditional E-value: 9.2e-08
   TIGR03005  14 tvldglelevaaGekvaliGpsGsGkstilrilmtle 50 
                 ++ld+l+ +v+aG  +a++GpsG+Gk+t+l +lm  +
  MMETSP1137-20121227|1213_1 143 KLLDDLSGTVEAGSVLAIMGPSGAGKTTLLNMLMLED 179
                 579******************************9644 PP

  == domain 2    score: 42.0 bits;  conditional E-value: 2.1e-13
   TIGR03005 119 araeaekravelldmvGladkadalpaqlsGGqkqrvaiaralalrpkvllfdevtsaldpelveevlnvlrrlasetdltmllvthemgfar.efadrvlffdkGki 225
                 ++ae ++  v+ ++    ++  + +   lsGGqk+r+++a al+ rp+v+++de+ts ld     +++  l+++a+ + +++l   h+   a  +  d+vlf+  G+ 
  MMETSP1137-20121227|1213_1 235 TKAEQRDLVVDWVESCKNTKAGNVFFKGLSGGQKRRLSLAIALSKRPHVVFLDEPTSGLDAAAAANIMFYLKEVAKAESIAILCTIHQPSTAVfNGFDKVLFLTSGRP 342
                 5566666666777776666667778899************************************************************988752677******99986 PP

>> TIGR02868  CydC: thiol reductant ABC exporter, CydC subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.8   0.2   3.9e-20   2.5e-18     349     527 ..     142     319 ..      97     323 .. 0.74

  Alignments for each domain:
  == domain 1    score: 63.8 bits;  conditional E-value: 3.9e-20
   TIGR02868 349 e.vlkgvsldlepGervavvGasGaGKstLlalla..glldplkGevtldgvsvaslsesevrrvvsvlaqdaHlF.....dttvreNlrlarpdatdeellaaLervgLadwlraLpdGldtklgeggarlSGGerqRlalARaLladapvllLDEPtehLDaeteeelledLl.aaeegrtvvlvt 527
                 +  l+++s ++e+G+ +a++G+sGaGK+tLl++l+        +G v+l g    +++ +  +r ++v++q   l+        +   +r+ +p+ t +e  +        dw+++ ++    ++  +g  lSGG+++Rl lA aL +   v+ LDEPt +LDa+++++++  L   a+++   +l t
  MMETSP1137-20121227|1213_1 142 RkLLDDLSGTVEAGSVLAIMGPSGAGKTTLLNMLMleDTGGDPRGVVALGG---NEFTLDTYKRHACVVQQTDTLWwplspRDHIGYAVRMYQPTFTKAEQRD-----LVVDWVESCKNTKAGNVFFKG--LSGGQKRRLSLAIALSKRPHVVFLDEPTSGLDAAAAANIMFYLKeVAKAESIAILCT 319
                 348999*************************998722333446899**999...5666688899******999997322222345555566666666666555.....457999996665555555555..9***************************************99994344444455555 PP

>> TIGR01187  potA: polyamine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.3   0.0   8.3e-21   5.3e-19       1     178 [.     160     341 ..     160     353 .. 0.87

  Alignments for each domain:
  == domain 1    score: 66.3 bits;  conditional E-value: 8.3e-21
   TIGR01187   1 lLGpsGsGkttlLrllaGlee..ldsGkilldgedvtevpaekrsvnvvfqsyaLfPhmtveenvafgLkmrk..vpkaeikervkeaLelvqleefakrkpsqlsGGqrqrvalaravvkkPkiLLlDeplsaLDkkLrdqmqlelkalqeklGitvvlvthDqeealtm.sdriavlrkGk 178
                 ++GpsG+GkttlL +l   ++     G + l+g++ t   ++kr+  vv q   L+  ++  + + ++++m +    kae ++ v + +e  + ++ ++   + lsGGq++r++la a+ k+P++++lDep s LD     ++   lk++ +   i+++   h  + a+    d++  l +G+
  MMETSP1137-20121227|1213_1 160 IMGPSGAGKTTLLNMLMLEDTggDPRGVVALGGNEFTL-DTYKRHACVVQQTDTLWWPLSPRDHIGYAVRMYQptFTKAEQRDLVVDWVESCKNTKAGNVFFKGLSGGQKRRLSLAIALSKRPHVVFLDEPTSGLDAAAAANIMFYLKEVAKAESIAILCTIHQPSTAVFNgFDKVLFLTSGR 341
                 69***********99875444114589********986.689****************************98622578899999**********************************************************99*******99999999999988887643146666666665 PP

>> TIGR02211  LolD_lipo_ex: lipoprotein releasing system, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.3   0.0   6.5e-08   4.2e-06       7      69 ..     131     195 ..     127     207 .. 0.83
   2 !   39.8   0.0   1.1e-12   7.3e-11     141     214 ..     262     337 ..     234     342 .. 0.86

  Alignments for each domain:
  == domain 1    score: 24.3 bits;  conditional E-value: 6.5e-08
   TIGR02211   7 ltksykegkleievlkgvsleiekgelvaivGssGsGkstllhllggldkpt..sGevllkGkel 69 
                 ++k+ ++gk+  ++l+++s  +e+g ++ai+G sG+Gk+tll +l   d+     G v l G+e+
  MMETSP1137-20121227|1213_1 131 VKKKGEKGKVPRKLLDDLSGTVEAGSVLAIMGPSGAGKTTLLNMLMLEDTGGdpRGVVALGGNEF 195
                 67888999999********************************9987666432257777777665 PP

  == domain 2    score: 39.8 bits;  conditional E-value: 1.1e-12
   TIGR02211 141 elsGGerqrvaiaralvnkPklvladePtgnldkktakkifelllelnkekntallvvthdlela..kkldrvlel 214
                  lsGG+++r ++a al ++P++v+ dePt+ ld+++a +i+  l+e+ k++ +a+l   h+ + a  + +d+vl l
  MMETSP1137-20121227|1213_1 262 GLSGGQKRRLSLAIALSKRPHVVFLDEPTSGLDAAAAANIMFYLKEVAKAESIAILCTIHQPSTAvfNGFDKVLFL 337
                 69********************************************************998754411455666655 PP

>> TIGR02204  MsbA_rel: ABC transporter, permease/ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.4   0.0   1.3e-20   8.4e-19     352     562 ..     141     352 ..      97     356 .. 0.75

  Alignments for each domain:
  == domain 1    score: 65.4 bits;  conditional E-value: 1.3e-20
   TIGR02204 352 dqkaldgldltvrpGetvalvGPsGaGkstllelllrfy..dPqsGailldGvdlreldpeelrerlalvpqdsalf.aasvleniryGrpdasdeeveaaakaaeadefisklpeGydtllGerg.vtLsGGqkqriaiarailkdapiLLLdeatsaLdaeseqlvqqaleelmkgrttlv..iahrLat..vlkadrivvldkGriveqGthaeLi 562
                  +k ld+l+ tv++G ++a++GPsGaGk+tll++l+        +G + l+G +      +  +++  +v+q  +l+   s ++ i y      +   ++a +     +++++     +t+ G+     LsGGqk+r+++a a+ k   +++Lde ts Lda +  ++   l+e+ k     +    h+ +t      d+++ l  Gr    G  a+L+
  MMETSP1137-20121227|1213_1 141 PRKLLDDLSGTVEAGSVLAIMGPSGAGKTTLLNMLMLEDtgGDPRGVVALGGNEF---TLDTYKRHACVVQQTDTLWwPLSPRDHIGYAVR-MYQPTFTKAEQRDLVVDWVES---CKNTKAGNVFfKGLSGGQKRRLSLAIALSKRPHVVFLDEPTSGLDAAAAANIMFYLKEVAKAESIAIlcTIHQPSTavFNGFDKVLFLTSGRPAYLGPAAQLV 352
                 46789****************************9875321133479******865...567788999999999998725799*****9754.444555555555555555554...55666676541469*******************************************9998776544115688766213456999999888877776666665 PP

>> TIGR01166  cbiO: cobalt ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.6   0.0   5.6e-20   3.6e-18       6     183 ..     143     318 ..     139     323 .. 0.85

  Alignments for each domain:
  == domain 1    score: 63.6 bits;  conditional E-value: 5.6e-20
   TIGR01166   6 evlkglnlavergevlallGanGaGkstlllhl..nGllrPksGkvlldGeeldysrkgllelrkkvalvlqdpddqlfaadvdedvafgplnl..GlseaeverrvrealaavdisgleerpthllsgGekkrvaiagavalrpdvllldePtagldpaGaeqlleilrklreeGktvvis 183
                 + l++l+ +ve g+vla++G+ GaGk+tll++l  + +     G v l+G+e   +      + k+ a+v+q++d   +  +  + + ++ +      ++ae +  v + ++  + ++  +   + lsgG+k+r+++a a++ rp+v++ldePt+gld+a a +++  l+++ ++    +++
  MMETSP1137-20121227|1213_1 143 KLLDDLSGTVEAGSVLAIMGPSGAGKTTLLNMLmlEDTGGDPRGVVALGGNEFTLD------TYKRHACVVQQTDTLWWPLSPRDHIGYAVRMYqpTFTKAEQRDLVVDWVESCKNTKAGNVFFKGLSGGQKRRLSLAIALSKRPHVVFLDEPTSGLDAAAAANIMFYLKEVAKAESIAILC 318
                 57999************************987611555556678999999998754......45667899999998888888888899988765226788999999*************************************************************999998766555554 PP

>> TIGR01288  nodI: nodulation ABC transporter NodI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.9   0.0     4e-20   2.6e-18      19     196 ..     144     324 ..     128     402 .. 0.82

  Alignments for each domain:
  == domain 1    score: 63.9 bits;  conditional E-value: 4e-20
   TIGR01288  19 vvndlsftiaagecfgllgpngagkstiarlv.lglispdegkitvlgepvpararlarakigvvpqfdnldreftvrenllvfgryfg..lstreieevipsllefarleskadvrvadlsggmkrrltlaralindpqllildepttgldpharhliwerlrsl.largktilltthlme 196
                 +++dls t+ ag ++ ++gp gagk+t+  ++ l  +  d   +  lg ++ +     r +  vv+q d+l   ++ r+ +    r ++  ++  e  + +   +e ++     +v    lsgg krrl+la al + p+++ ldept+gld  a   i   l+ +  a   +il t h   
  MMETSP1137-20121227|1213_1 144 LLDDLSGTVEAGSVLAIMGPSGAGKTTLLNMLmLEDTGGDPRGVVALGGNEFTLDTYKR-HACVVQQTDTLWWPLSPRDHIGYAVRMYQptFTKAEQRDLVVDWVESCKNTKAGNVFFKGLSGGQKRRLSLAIALSKRPHVVFLDEPTSGLDAAAAANIMFYLKEVaKAESIAILCTIHQPS 324
                 689************************98775266777787778888888877666655.5689****************98888877622334455678999999999988899***************************************9999998888762466778888888655 PP

>> TIGR03797  NHLM_micro_ABC2: NHLM bacteriocin system ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.8   0.0   2.5e-08   1.6e-06     467     516 ..     143     194 ..     136     214 .. 0.78
   2 !   35.5   0.0   1.4e-11     9e-10     588     672 ..     262     352 ..     259     357 .. 0.79

  Alignments for each domain:
  == domain 1    score: 24.8 bits;  conditional E-value: 2.5e-08
   TIGR03797 467 lvLddvslkiepGefvaivGaSGsGKStllrlLLgFekPe..sGsvlyDGqd 516
                 + Ldd+s ++e+G  +ai+G+SG+GK tll +L+  ++     G v+  G++
  MMETSP1137-20121227|1213_1 143 KLLDDLSGTVEAGSVLAIMGPSGAGKTTLLNMLMLEDTGGdpRGVVALGGNE 194
                 689*****************************99766643224666666665 PP

  == domain 2    score: 35.5 bits;  conditional E-value: 1.4e-11
   TIGR03797 588 tlSGGQrQRlliAralvrkPrillfDEATSALDNrtQaiVseslekl.kvtRivi...AHRLST.i.rnadrilvleeGrvveqGsyeeLl 672
                 +lSGGQ+ Rl +A al ++P+++++DE TS LD  + a ++  l+++ k+  i+i    H  ST + +  d++l l  Gr +  G   +L+
  MMETSP1137-20121227|1213_1 262 GLSGGQKRRLSLAIALSKRPHVVFLDEPTSGLDAAAAANIMFYLKEVaKAESIAIlctIHQPSTaVfNGFDKVLFLTSGRPAYLGPAAQLV 352
                 79************************************99988887623444555223688888431346888888888877777777765 PP

>> TIGR03410  urea_trans_UrtE: urea ABC transporter, ATP-binding protein UrtE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.3   0.0   1.2e-18   7.7e-17      14     209 ..     143     341 ..     139     353 .. 0.80

  Alignments for each domain:
  == domain 1    score: 59.3 bits;  conditional E-value: 1.2e-18
   TIGR03410  14 evlrdvslevekgevvavlGrngvGkttllkalvgllk..vksGeielegeditklkpeervkaGiayvpqGreifpkltveenlelglealkkk..ekkipeeiyelFPvlkemlkRrgGd.....LsGGqqqqlaiaRaLvtePklllLDePteGiqPsiikeiekvikelakekdlaillv.eqvldfaleladrylvlerGe 209
                 ++l d+s +ve+g+v+a++G  g+Gkttll  l+   +    +G ++l g+++t   +++r       v q  ++   l+ ++ +  ++++ + +  + +  + +      +++ ++ ++G+     LsGGq+  l++a aL ++P+++ LDePt G+  +  ++i   +ke+ak + +ail    q    + +  d++l l  G+
  MMETSP1137-20121227|1213_1 143 KLLDDLSGTVEAGSVLAIMGPSGAGKTTLLNMLMLEDTggDPRGVVALGGNEFTLD-TYKRH---ACVVQQTDTLWWPLSPRDHIGYAVRMYQPTftKAEQRDLVV---DWVESCKNTKAGNvffkgLSGGQKRRLSLAIALSKRPHVVFLDEPTSGLDAAAAANIMFYLKEVAKAESIAILCTiHQPSTAVFNGFDKVLFLTSGR 341
                 57899999***********************9996554116789*******99755.44443...36799**************9999988876532333333344...4677888888887666669*****************************************************9751455555556666777666665 PP

>> TIGR02770  nickel_nikD: nickel import ATP-binding protein NikD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.9   0.0   1.5e-18   9.9e-17       2     202 ..     145     340 ..     144     352 .. 0.81

  Alignments for each domain:
  == domain 1    score: 58.9 bits;  conditional E-value: 1.5e-18
   TIGR02770   2 vqdvnlslkrgkvlalvGesGsGksltalailglldkeltktsGeilldgkelaalalrgreialilqnPrsafnPlltikeqlletlkalekls..kqakelivealeavgLeeaeevlkkypfelsGGmlqRvmialallleaplliaDePttdlDvvvqaevLklleelrekrglgillithDlg.vvaeladevavmekG 202
                  +d++ ++  g vla++G sG+Gk++  l +l +l+      +G ++l g+e++  +++  + a+++q+  + + Pl   ++++  ++++ + +   ++ ++l+v+ +e    ++a +v   +   lsGG   R+ +a+al  ++ +++ DePt+ lD++++a+++ +l+e+ + ++++il   h  +  v +  d+v+ +++G
  MMETSP1137-20121227|1213_1 145 LDDLSGTVEAGSVLAIMGPSGAGKTTL-LNML-MLEDTGGDPRGVVALGGNEFTLDTYK--RHACVVQQTDTLWWPLS-PRDHIGYAVRMYQPTFtkAEQRDLVVDWVESCKNTKAGNV---FFKGLSGGQKRRLSLAIALSKRPHVVFLDEPTSGLDAAAAANIMFYLKEVAKAESIAILCTIHQPStAVFNGFDKVLFLTSG 340
                 6789999*****************854.4444.455577899**********9887775..34778899999999985.5889999998877665235566778888887776666555...6679*******************************************************99887441344555666655555 PP

>> TIGR01846  type_I_sec_HlyB: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.0   0.0   1.8e-18   1.2e-16     471     679 ..     143     352 ..     104     357 .. 0.82

  Alignments for each domain:
  == domain 1    score: 58.0 bits;  conditional E-value: 1.8e-18
   TIGR01846 471 evlsnlsldikaGeviGivGpsGsGkstltkllqrlyv..PekGrvlvdgvdlaladPawlrrqvgvvlqenvl.fsrsirdnialakPaiseekviaaaklaGahdfiselkqGyetevgekGaalsGGqrqrialaralvanPrilildeatsaldyeseavimrnlreickgrtv..iiiahrlst..vraadrilvlekGkivesGkheell 679
                 ++l++ls  ++aG v+ i+GpsG+Gk+tl  +l    +    +G v + g +++l    + +r+  vv q + l +  s rd i  a   + +    +a +     d++++ k+    +v  kG  lsGGq++r++la al + P+++ lde ts ld+ + a im  l+e++k+  +  ++  h+ st      d++l l  G+ +  G  ++l+
  MMETSP1137-20121227|1213_1 143 KLLDDLSGTVEAGSVLAIMGPSGAGKTTLLNMLMLEDTggDPRGVVALGGNEFTL---DTYKRHACVVQQTDTLwWPLSPRDHIGYAV-RMYQPTFTKAEQRDLVVDWVESCKNTKAGNVFFKG--LSGGQKRRLSLAIALSKRPHVVFLDEPTSGLDAAAAANIMFYLKEVAKAESIaiLCTIHQPSTavFNGFDKVLFLTSGRPAYLGPAAQLV 352
                 5799************************999877666621457889999999876...4789999***99877625789*****9875.67778888999999999*******99999999998..9**********************************************9987611556788876324678999999999877777666665 PP

>> TIGR03771  anch_rpt_ABC: anchored repeat-type ABC transporter, ATP-binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.2   0.0   3.2e-18   2.1e-16       3     185 ..     152     336 ..     151     350 .. 0.79

  Alignments for each domain:
  == domain 1    score: 58.2 bits;  conditional E-value: 3.2e-18
   TIGR03771   3 vdkGellgllGpnGaGkttllrailglik...vakGsvkvagkssr.kgrreiGyvpqrhefawdfpidveqtvlsGragli..GllrrpkkadfaavadalervklteladrpvGelsGGqrqrvlvaralavkpslllldepftGldlpsqellvelfeelageg.tailmtthdlaeav.atcdrvvl 185
                 v++G +l+++Gp GaGkttll   l l       +G v ++g+  + + +++   v q+ +  w +p++ ++ +  G a ++    + ++++ d   v d +e  k t+  +     lsGGq++r+ +a al+ +p++++ldep +Gld  +  +++  ++e+a+++  ail t h+ + av +  d+v++
  MMETSP1137-20121227|1213_1 152 VEAGSVLAIMGPSGAGKTTLLNM-LMLEDtggDPRGVVALGGNEFTlDTYKRHACVVQQTDTLW-WPLSPRDHI--GYAVRMyqPTFTKAEQRD--LVVDWVESCKNTKAGNVFFKGLSGGQKRRLSLAIALSKRPHVVFLDEPTSGLDAAAAANIMFYLKEVAKAEsIAILCTIHQPSTAVfNGFDKVLF 336
                 789*****************975.4444311246899**9998754255566666777777777.799999887..555555014555555555..578999*************************************************************987626899999*999887234566655 PP

>> TIGR01978  sufC: FeS assembly ATPase SufC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.9   0.1   4.8e-09   3.1e-07      13      65 ..     142     194 ..     128     204 .. 0.87
   2 !   28.1   0.0   4.1e-09   2.6e-07     142     236 ..     260     356 ..     231     360 .. 0.79

  Alignments for each domain:
  == domain 1    score: 27.9 bits;  conditional E-value: 4.8e-09
   TIGR01978  13 keiLkglnlevkkGevhaimGpnGsGkstLskvlaghekyevtsGeiklkgqd 65 
                 +++L++l+ +v++G v aimGp G+Gk tL ++l+ +++    +G ++l g++
  MMETSP1137-20121227|1213_1 142 RKLLDDLSGTVEAGSVLAIMGPSGAGKTTLLNMLMLEDTGGDPRGVVALGGNE 194
                 689********************************988877777777776655 PP

  == domain 2    score: 28.1 bits;  conditional E-value: 4.1e-09
   TIGR01978 142 neGfsGGekkrneilqlallePklaiLDeiDsGlDvDalkivaegvnklreeekalliit.hyerllelikPdvvhvlldGrivksGd.velakele 236
                  +G sGG k+r  +   +  +P+++ LDe  sGlD  a   ++  ++++++ e+  ++ t h+         d+v  l++Gr +  G  ++l++ le
  MMETSP1137-20121227|1213_1 260 FKGLSGGQKRRLSLAIALSKRPHVVFLDEPTSGLDAAAAANIMFYLKEVAKAESIAILCTiHQPSTAVFNGFDKVLFLTSGRPAYLGPaAQLVSFLE 356
                 579************9999*****************************9998665555551655555555579999999999777764145555555 PP

>> TIGR00960  3a0501s02: type II secretory pathway family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.4   0.0   5.6e-18   3.6e-16      17     197 ..     143     322 ..     130     341 .. 0.80

  Alignments for each domain:
  == domain 1    score: 57.4 bits;  conditional E-value: 5.6e-18
   TIGR00960  17 laldnvtvkiekGelvflvGhsGaGkstllklilgiekp..saGkirvsgqdltklrdrevpflrrqiGivfqdfkllsdrtvydnvalalriiGvkgreieer..vsaalekvGlkdkakalPvqlsgGeqqrvaiaravvnkPallladePtgnlddelsrdilelleevnraGt.tvlvathd 197
                   ld+++  +e G++  ++G+sGaGk+tll++++  ++    +G + + g++ t      +   +r+  +v q   l    +  d +  a+r+   +  ++e+r  v   +e    ++  + + + lsgG+++r+++a a+ ++P++++ dePt+ ld + + +i+  l+ev +a   ++l + h+
  MMETSP1137-20121227|1213_1 143 KLLDDLSGTVEAGSVLAIMGPSGAGKTTLLNMLMLEDTGgdPRGVVALGGNEFT------LDTYKRHACVVQQTDTLWWPLSPRDHIGYAVRMYQPTFTKAEQRdlVVDWVESCKNTKAGNVFFKGLSGGQKRRLSLAIALSKRPHVVFLDEPTSGLDAAAAANIMFYLKEVAKAESiAILCTIHQ 322
                 469****************************99987765226899999998775......556789999***********************9987777776662244556666555566778899**********************************************98765055555565 PP

>> TIGR02203  MsbA_lipidA: lipid A export permease/ATP-binding protein MsbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.0   0.0   4.1e-18   2.6e-16     346     555 ..     142     351 ..     113     359 .. 0.80

  Alignments for each domain:
  == domain 1    score: 57.0 bits;  conditional E-value: 4.1e-18
   TIGR02203 346 realdsislkveaGevvalvGrsGsGkstlvnllpR..FyepdsGeillDgvdladlkLasLRrqvalvsqdvvLF.ddtiaenvaYgeleevdeaeveealaaaylkdlvdklpeGldtevGengskLsGGqRqRlaiaRallkdaPiLiLDeatsaLDneseRlvqaaLerlmkgRtt..lviahRLst..iekaDrivvlddGkiverGtheeL 555
                 r+ ld++s +veaG v+a++G+sG+Gk+tl+n+l         +G + l g+   +++L++ +r+  +v q  +L+   +  + ++Y+ +  + +    +a +   + d v++  +    +v  +g  LsGGq+ Rl++a al k   ++ LDe ts LD+ +  ++   L+++ k      l   h  st   +  D+++ l +G+    G+  +L
  MMETSP1137-20121227|1213_1 142 RKLLDDLSGTVEAGSVLAIMGPSGAGKTTLLNMLMLedTGGDPRGVVALGGN---EFTLDTYKRHACVVQQTDTLWwPLSPRDHIGYAVR--MYQPTFTKAEQRDLVVDWVESCKNTKAGNVFFKG--LSGGQKRRLSLAIALSKRPHVVFLDEPTSGLDAAAAANIMFYLKEVAKAESIaiLCTIHQPSTavFNGFDKVLFLTSGRPAYLGPAAQL 351
                 7899****************************98530022334566777775...789*************8888625688999***988..6667777787777777777777776666666665..9*******************************************999876541145579988843477899999999987777766666 PP

>> TIGR02314  ABC_MetN: D-methionine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.9   0.0   2.3e-17   1.5e-15      19     200 ..     143     322 ..     129     342 .. 0.80

  Alignments for each domain:
  == domain 1    score: 54.9 bits;  conditional E-value: 2.3e-17
   TIGR02314  19 kaldnvslfvpkgqifgvigasgagkstlircvnllekpt..sgavivdgkdlttlsnaelvkarrqigmifqhfnl...lssrtvfgnvalplelentpkekikrkvtellalvglsdkkdsypsnlsggqkqrvaiaralasepkvllcdeatsaldpattqsilellkeinrrlgltillithe 200
                 k ld++s  v +g ++ ++g sgagk+tl+  + l ++     g v + g+++t      l + +r+  ++ q   l   ls r  +g  a+ +   + +k + +  v + +     ++  + +   lsggqk+r+++a al+  p+v++ de ts ld a++  i+  lke+ +  +++il   h+
  MMETSP1137-20121227|1213_1 143 KLLDDLSGTVEAGSVLAIMGPSGAGKTTLLNMLMLEDTGGdpRGVVALGGNEFT------LDTYKRHACVVQQTDTLwwpLSPRDHIGY-AVRMYQPTFTKAEQRDLVVDWVESCKNTKAGNVFFKGLSGGQKRRLSLAIALSKRPHVVFLDEPTSGLDAAAAANIMFYLKEVAKAESIAILCTIHQ 322
                 6799**************************988766665422467777777776......55678888888888777333555555543.44444455566666777999999999999999************************************************************99886 PP

>> TIGR03269  met_CoM_red_A2: methyl coenzyme M reductase system, component A2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.1     1e-05   0.00065      14      47 ..     143     176 ..     132     189 .. 0.88
   2 !   37.8   0.0   2.9e-12   1.8e-10     153     257 ..     247     352 ..     193     363 .. 0.80

  Alignments for each domain:
  == domain 1    score: 16.2 bits;  conditional E-value: 1e-05
   TIGR03269  14 evlknisleleeGevlGilGksGaGksvllhllr 47 
                 + l ++s ++e G vl i+G sGaGk+ ll++l 
  MMETSP1137-20121227|1213_1 143 KLLDDLSGTVEAGSVLAIMGPSGAGKTTLLNMLM 176
                 578899999**********************996 PP

  == domain 2    score: 37.8 bits;  conditional E-value: 2.9e-12
   TIGR03269 153 leevklehrithiardlsGGekqrvvlarqlakeplllladeptGtldpktaklvhealkeavkeedislvltshwpev.iedlsdkaillekGeiveeGepeevv 257
                 +e  k  +      + lsGG+k+r+ la  l+k+p +++ dept  ld  +a  +   lke +k+e+i+++ t h p   + +  dk ++l  G     G + ++v
  MMETSP1137-20121227|1213_1 247 VESCKNTKAGNVFFKGLSGGQKRRLSLAIALSKRPHVVFLDEPTSGLDAAAAANIMFYLKEVAKAESIAILCTIHQPSTaVFNGFDKVLFLTSGRPAYLGPAAQLV 352
                 5555555555556688************************************99999******************9964256677899999888877777666665 PP

>> TIGR03522  GldA_ABC_ATP: gliding motility-associated ABC transporter ATP-binding subunit GldA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.8   0.0   1.6e-17     1e-15      15     200 ..     142     329 ..     128     344 .. 0.84

  Alignments for each domain:
  == domain 1    score: 55.8 bits;  conditional E-value: 1.6e-17
   TIGR03522  15 qkaldevsfeaekGeivGflGPnGaGkstlmkiltgylkads....GsvavagedvlknslevrkniGylPehnPlyldlyvreylefsaalyklkgrklkkr..veelielvGlkaeqhkkigalskGyrqrvGlakallhdPkvlildePttGldPnqlveirevikeiakdktvilsthimqevealcd 200
                 +k ld++s ++e G+++  +GP GaGk+tl+ +l   l+ ++    G va+ g++ + ++ +  ++   + + + l+  l  r+++ +   +y+ + +k ++r  v + +e +  ++        ls G ++r  la al   P+v+ ldePt+Gld     +i   +ke+ak+ ++ +   i q   a+ +
  MMETSP1137-20121227|1213_1 142 RKLLDDLSGTVEAGSVLAIMGPSGAGKTTLLNMLM--LEDTGgdprGVVALGGNEFTLDTYK--RHACVVQQTDTLWWPLSPRDHIGYAVRMYQPTFTKAEQRdlVVDWVESCKNTKAGNVFFKGLSGGQKRRLSLAIALSKRPHVVFLDEPTSGLDAAAAANIMFYLKEVAKAESIAILCTIHQPSTAVFN 329
                 6889**************************99875..4443311126788888888888765..5556688999*******************9776665554449999*******999999******************************************************9998889998888853 PP

>> TIGR03719  ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.6   0.0   7.2e-09   4.6e-07     326     382 ..     133     191 ..     108     223 .. 0.77
   2 !   27.0   0.0   5.4e-09   3.4e-07     158     207 ..     259     308 ..     235     321 .. 0.85

  Alignments for each domain:
  == domain 1    score: 26.6 bits;  conditional E-value: 7.2e-09
   TIGR03719 326 enlskafgdklliddlsfklpkggivGviGpnGaGkstlfklitgkek..pdsGelkiG 382
                 ++ +k+   + l+ddls ++ +g+++ ++Gp GaGk+tl+++++ +++  + +G + +G
  MMETSP1137-20121227|1213_1 133 KKGEKGKVPRKLLDDLSGTVEAGSVLAIMGPSGAGKTTLLNMLMLEDTggDPRGVVALG 191
                 45566666789*******************************99887622345777775 PP

  == domain 2    score: 27.0 bits;  conditional E-value: 5.4e-09
   TIGR03719 158 kveklsGGekrrvalcrlllekPdlllldePtnhldaesvaWlekflkey 207
                   + lsGG+krr++l+  l ++P +++ldePt  lda + a +  +lke 
  MMETSP1137-20121227|1213_1 259 FFKGLSGGQKRRLSLAIALSKRPHVVFLDEPTSGLDAAAAANIMFYLKEV 308
                 5678*********************************9999888888875 PP

>> TIGR03740  galliderm_ABC: lantibiotic protection ABC transporter, ATP-binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.0   0.0     3e-17   1.9e-15      13     182 ..     142     321 ..     130     345 .. 0.76

  Alignments for each domain:
  == domain 1    score: 55.0 bits;  conditional E-value: 3e-17
   TIGR03740  13 qavvnnvslkvkknsvygllGpnGaGkstllklltGllrkt....sGeilldgrewtrkdlkkiGslie.sPalyenltarenlkvrtlllglpesriee...vlkivdlentekkka...kqfslGmkqrlGiaiallnkPkllildePtnGldPlGiqelreliksf.pekGitvilssh 182
                 +++++++s +v+  sv +++Gp GaGk+tll +l  +l++t     G + l g+e+t    k   ++++ + +l+  l+ r+ +   + + +   ++ e+   v++ v+  +++k      k +s G k+rl +aial ++P+++ ldePt Gld     ++   +k + + + i+++ + h
  MMETSP1137-20121227|1213_1 142 RKLLDDLSGTVEAGSVLAIMGPSGAGKTTLLNML--MLEDTggdpRGVVALGGNEFTLDTYKRHACVVQqTDTLWWPLSPRDHIGYAVRMYQPTFTKAEQrdlVVDWVESCKNTKAGNvffKGLSGGQKRRLSLAIALSKRPHVVFLDEPTSGLDAAAAANIMFYLKEVaKAESIAILCTIH 321
                 67899***************************99..67776122256799********9999888777616789*********9877777665555444411156666654444433212366799*****************************998888776665541445666666555 PP

>> TIGR02769  nickel_nikE: nickel import ATP-binding protein NikE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.7   0.0   2.7e-16   1.8e-14      24     247 ..     142     360 ..     128     368 .. 0.80

  Alignments for each domain:
  == domain 1    score: 51.7 bits;  conditional E-value: 2.7e-16
   TIGR02769  24 kavldnvslsleeGetvallGrsGaGkstlarlllGlek..PakGevsfrGqdlakldrkqrkafrrdvqlvfqdsisavnprksvreiigePlrhlt.sldeserkariaellelvelrsevldklPrqlsGGqlqriniaralavePklivldeavsnldlvlqasilellkklkqefGlaylfithdlr.lvqkfaqrvlvldeGqiveeikvaellsfkhpagr 247
                 +++ld++s ++e+G  +a++G sGaGk+tl  +l+  +     +G v   G++ + ld+      +r+  +v q + +   p  s r  ig  +r ++ ++ ++e+++ + + +e  +  ++  + + + lsGGq +r+++a al+ +P+++ lde  s ld    a+i+  lk++ ++  +a+l   h  + +v +  ++vl l  G+     + a+l+sf + ag+
  MMETSP1137-20121227|1213_1 142 RKLLDDLSGTVEAGSVLAIMGPSGAGKTTLLNMLMLEDTggDPRGVVALGGNEFT-LDTY-----KRHACVVQQ-TDTLWWP-LSPRDHIGYAVRMYQpTFTKAEQRDLVVDWVESCKN-TKAGNVFFKGLSGGQKRRLSLAIALSKRPHVVFLDEPTSGLDAAAAANIMFYLKEVAKAESIAILCTIHQPStAVFNGFDKVLFLTSGRPAYLGPAAQLVSFLERAGK 360
                 5789**************************9988743331135788888888765.6654.....555555544.4444444.456677777888886367899999999998888764.455677899********************************************************9999865267778899999999998888888888888877776 PP

>> TIGR03796  NHLM_micro_ABC1: NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.4   0.0   1.7e-16   1.1e-14     492     688 ..     142     341 ..     132     355 .. 0.79

  Alignments for each domain:
  == domain 1    score: 51.4 bits;  conditional E-value: 1.7e-16
   TIGR03796 492 apliedfslslkpGqrvAlvGgsGsGkstiaklva..GlyepwsGeilfDgkpreeiprevlanslalvdq.divlfegtvrdnltlwdetipeedlvrAakDAaihdvilarpggyeaelaegganlsGGqrqRleiARaLvknPsiLilDEatsaLDaetEkaidenlrr....RgctciivaHRLst..iRdcdeiivlerGk 688
                 ++l++d+s +++ G+ +A++G+sG+Gk t+  ++       + +G +++ g+   e++ ++ +    +v+q d + +  + rd +  +   + +  +++A +   + d + + ++  + ++   g  lsGGq+ Rl +A aL k+P ++ lDE ts LDa++  +i+  l++      ++++   H  st      d+++ l  G+
  MMETSP1137-20121227|1213_1 142 RKLLDDLSGTVEAGSVLAIMGPSGAGKTTLLNMLMleDTGGDPRGVVALGGN---EFTLDTYKRHACVVQQtDTLWWPLSPRDHIG-YAVRMYQPTFTKAEQRDLVVDWVESCKNTKAGNVFFKG--LSGGQKRRLSLAIALSKRPHVVFLDEPTSGLDAAAAANIMFYLKEvakaESIAILCTIHQPSTavFNGFDKVLFLTSGR 341
                 689***************************9887411333455677888775...5666777777788888345556789999998.788899999******99****************99877..9**************************************9888752211445666666777763224566777666666 PP

>> TIGR02324  CP_lyasePhnL: phosphonate C-P lyase system protein PhnL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.5   0.0   4.5e-07   2.9e-05      18      55 ..     139     176 ..     123     199 .. 0.88
   2 !   27.8   0.0   5.2e-09   3.3e-07     150     209 ..     263     323 ..     257     329 .. 0.86

  Alignments for each domain:
  == domain 1    score: 21.5 bits;  conditional E-value: 4.5e-07
   TIGR02324  18 GvklpvlkevsleveaGelvalsGksGaGkstllksly 55 
                  v ++ l+++s +veaG ++a++G+sGaGk tll +l 
  MMETSP1137-20121227|1213_1 139 KVPRKLLDDLSGTVEAGSVLAIMGPSGAGKTTLLNMLM 176
                 4567889999************************9985 PP

  == domain 2    score: 27.8 bits;  conditional E-value: 5.2e-09
   TIGR02324 150 fsGGekqRvniaraliadrPiLLLdePtasLdaanrkvvvelike.akargaaligifhde 209
                  sGG k+R+ +a al +   ++ LdePt+ Ldaa  + ++  +ke aka+ +a++  +h+ 
  MMETSP1137-20121227|1213_1 263 LSGGQKRRLSLAIALSKRPHVVFLDEPTSGLDAAAAANIMFYLKEvAKAESIAILCTIHQP 323
                 79**************9666889**********99988877777637999******99975 PP

>> TIGR03411  urea_trans_UrtD: urea ABC transporter, ATP-binding protein UrtD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.6   0.0   1.3e-15   8.4e-14      18     197 ..     145     316 ..     142     322 .. 0.87

  Alignments for each domain:
  == domain 1    score: 49.6 bits;  conditional E-value: 1.3e-15
   TIGR03411  18 lndlslsveegelrviiGpnGaGkttllDvitGk.tr.pdeGsvlfkgkdltklkeaeiarlGigRkfqkpsvfeeltvlenlelalkadksvlallfarlskeekerieevleligLeekadkkaglLshGqkqwLeigmllvqepkllllDePvaGmtdeetektaellkelakersvvv 197
                 l+dls +ve+g++ +i+Gp GaGkttll++++   t    +G v + g+++t  + ++ a    +   q+ +++  l+ ++ +  a+++ + +++      ++e+++ + + +e  + ++  +     Ls Gqk +L +++ l ++p++++lDeP++G+ ++  +++   lke+ak +s+ +
  MMETSP1137-20121227|1213_1 145 LDDLSGTVEAGSVLAIMGPSGAGKTTLLNMLMLEdTGgDPRGVVALGGNEFTLDTYKRHA----CVVQQTDTLWWPLSPRDHIGYAVRMYQPTFT------KAEQRDLVVDWVESCKNTKAGNVFFKGLSGGQKRRLSLAIALSKRPHVVFLDEPTSGLDAAAAANIMFYLKEVAKAESIAI 316
                 799999***********************98754133145799*****998866655544....33469*****************998887765......5688999999******************************************************************99976 PP

>> TIGR01192  chvA: glucan exporter ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.5   0.0   3.4e-15   2.2e-13     351     549 ..     145     344 ..     103     359 .. 0.73

  Alignments for each domain:
  == domain 1    score: 47.5 bits;  conditional E-value: 3.4e-15
   TIGR01192 351 vrdvsfeakagqtvaivgptgagkttlinllqr..vydpksgqilidgvdiatvtreslrksiatvfqdagllnrsirenirlgredat.deevveaakaaaasdfiekrlkgydtlvgergnrlsggerqrlaiarailknapilvldeatsaldvetearvkdaidalrknrttfii..ahrlst.v.readlvlfldqgrlie 549
                 + d+s ++ ag  +ai+gp+gagkttl+n+l          g + + g +    t ++ ++  a v q++  l   +    ++g      +    +a +     d++e+  ++    v  +g  lsgg+++rl++a a+ k   ++ lde ts ld  + a +   +  + k  +  i+   h+ st v    d vlfl  gr   
  MMETSP1137-20121227|1213_1 145 LDDLSGTVEAGSVLAIMGPSGAGKTTLLNMLMLedTGGDPRGVVALGGNEF---TLDTYKRH-ACVVQQTDTLWWPLSPRDHIGYAVRMyQPTFTKAEQRDLVVDWVESCKNTKAGNVFFKG--LSGGQKRRLSLAIALSKRPHVVFLDEPTSGLDAAAAANIMFYLKEVAKAESIAILctIHQPSTaVfNGFDKVLFLTSGRPAY 344
                 5799*************************9854113334468888888654...55666665.45555555555555444455555444044566677777888999998888888887777..9***************************************999999998887776225998884325679******999655 PP

>> TIGR01257  rim_protein: rim ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.1   0.0   1.1e-14   7.1e-13     943    1123 ..     142     325 ..     122     352 .. 0.71

  Alignments for each domain:
  == domain 1    score: 44.1 bits;  conditional E-value: 1.1e-14
   TIGR01257  943 rpavdrlnitfyenqitaflghngagktttlsilt..gllpptsgtvlvggkdietnldavrqslgmcpqhnilfhhltvaehilfyaqlkgrsweea.qleme.amledtglhhkrneeaqdlsgglqrklsvaiafvgdakvvvldeptsgvdpysrrsiwdlllkyrsgrti.imsthhmdea 1123
                  r  +d l  t+    + a++g  gagktt l +l          g v +gg+  e +ld+ ++   ++ q + l+  l+  +hi +  ++   ++ +a q ++    +e     +  n   + lsgg +r+ls+aia+    +vv ldeptsg+d  +   i   l       +i i+ t h   +
  MMETSP1137-20121227|1213_1  142 RKLLDDLSGTVEAGSVLAIMGPSGAGKTTLLNMLMleDTGGDPRGVVALGGN--EFTLDTYKRHACVVQQTDTLWWPLSPRDHIGYAVRMYQPTFTKAeQRDLVvDWVESCKNTKAGNVFFKGLSGGQKRRLSLAIALSKRPHVVFLDEPTSGLDAAAAANIMFYLKEVAKAESIaILCTIHQPST 325 
                  5567778888888888999999999999988876311233344578888887..567899999999999999999999999999888888777766552334330345666666667788899999999999999999999999999999999999888888776666554444325666555444 PP

>> TIGR01186  proV: glycine betaine/L-proline transport ATP binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.2   0.0   4.5e-14   2.9e-12      10     189 ..     146     322 ..     137     349 .. 0.80

  Alignments for each domain:
  == domain 1    score: 44.2 bits;  conditional E-value: 4.5e-14
   TIGR01186  10 ndvdleieeGeiiviiGlsGsGkstlvrllnrliePtaGkilidGediaeisdaelrevrrkkiamviqkialfPhmtildnislglellk..ideqerkekalealklvdleeyedryPdelsGGmqqrvGlaralaaePdlllmdeafsaldPlirdelqdelvklqkklqktivfithd 189
                 +d++  +e G ++ i+G+sG+Gk+tl+ +l  ++e t G     G+     ++  l +  ++  ++v q  +l    +  d i +++++ +  + + e+++   + +      +  + + + lsGG+++r+ la al+  P ++++de+ s ld     ++   l+++ k  + +i+   h 
  MMETSP1137-20121227|1213_1 146 DDLSGTVEAGSVLAIMGPSGAGKTTLLNML--MLEDTGGDP--RGVVALGGNEFTL-DTYKRHACVVQQTDTLWWPLSPRDHIGYAVRMYQptFTKAEQRDLVVDWVESCKNTKAGNVFFKGLSGGQKRRLSLAIALSKRPHVVFLDEPTSGLDAAAAANIMFYLKEVAKAESIAILCTIHQ 322
                 56677899******************9998..689998853..3444444444555.4445555556666688888999******99997633678888888999999999999999*************************************9999888888888877777777766665 PP

>> TIGR02633  xylG: D-xylose ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.4   0.0   0.00026     0.016      15      64 ..     143     192 ..     130     217 .. 0.78
   2 !   28.6   0.0   1.7e-09   1.1e-07     399     480 ..     258     341 ..     234     344 .. 0.83

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 0.00026
   TIGR02633  15 kaldnidlklraGeivslcGenGaGkstlmkvlsgvyphGtydGeilfeg 64 
                 k ld+++ +++aG ++++ G  GaGk+tl+ +l      G+  G +   g
  MMETSP1137-20121227|1213_1 143 KLLDDLSGTVEAGSVLAIMGPSGAGKTTLLNMLMLEDTGGDPRGVVALGG 192
                 56888888999999999999999999999998876666666555555555 PP

  == domain 2    score: 28.6 bits;  conditional E-value: 1.7e-09
   TIGR02633 399 lpiarlsGGnqqkavlakllllnprvlildeptrGvdvGakyeiyklinqlaq.eGvaiiv.vsselaevlGlsdrvlvigeGk 480
                 +   +lsGG++++  la  l+ +p+v+ ldept G+d  a ++i   ++++a+ e +ai+  +    + v+   d+vl +  G+
  MMETSP1137-20121227|1213_1 258 VFFKGLSGGQKRRLSLAIALSKRPHVVFLDEPTSGLDAAAAANIMFYLKEVAKaESIAILCtIHQPSTAVFNGFDKVLFLTSGR 341
                 55679**************************************99888888753789987525666677888888888888876 PP

>> TIGR02323  CP_lyasePhnK: phosphonate C-P lyase system protein PhnK
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.3   0.0   1.4e-11   9.1e-10      25     197 ..     153     321 ..     145     342 .. 0.75

  Alignments for each domain:
  == domain 1    score: 36.3 bits;  conditional E-value: 1.4e-11
   TIGR02323  25 ypGevlgivGesGsGkstllkalaarlladaGevtyesrsrelellalseaerrlllrtewGlvhqnprGlrmevsaGanigerllav.garhyGkiraaak.wlekve.idaarikpaafsGGmqqrlqiarnlvtrprlvfm.eptGGl.vsvqarll.llrglvrelglaviivth 197
                   G vl+i+G sG+Gk+tll+ l      d+G    +     + ++al   e  l        v q++  l   +s    ig  + +   +    + r+    w+e  +  +a+ +  + +sGG ++rl +a +l  rp++vf+ ept Gl  +  a ++  l+++ +  ++a++   h
  MMETSP1137-20121227|1213_1 153 EAGSVLAIMGPSGAGKTTLLNMLML---EDTGG---D----PRGVVALGGNEFTLDTYKRHACVVQQTDTLWWPLSPRDHIGYAVRMYqPTFTKAEQRDLVVdWVESCKnTKAGNVFFKGLSGGQKRRLSLAIALSKRPHVVFLdEPTSGLdAAAAANIMfYLKEVAKAESIAILCTIH 321
                 579******************9975...34442...2....33366666666555555556788899999***********9866444033333344444435998876145567899999******************************8778888886788888888888887777 PP

>> TIGR01193  bacteriocin_ABC: ABC-type bacteriocin transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.0   3.5e-05    0.0023     486     521 ..     141     176 ..     105     207 .. 0.78
   2 !   21.7   0.0   2.1e-07   1.4e-05     611     659 ..     262     310 ..     252     353 .. 0.73

  Alignments for each domain:
  == domain 1    score: 14.3 bits;  conditional E-value: 3.5e-05
   TIGR01193 486 gsevledislkikknekitlvGlsGsGkstlakllv 521
                  +++l+d+s ++++ ++++++G sG+Gk+tl  +l+
  MMETSP1137-20121227|1213_1 141 PRKLLDDLSGTVEAGSVLAIMGPSGAGKTTLLNMLM 176
                 5789***************************98775 PP

  == domain 2    score: 21.7 bits;  conditional E-value: 2.1e-07
   TIGR01193 611 sisgGqkqrlalarallsdskvlildestsnldlltekkivenllklkd 659
                  +sgGqk+rl+la al    +v+ lde ts ld     +i+  l ++ +
  MMETSP1137-20121227|1213_1 262 GLSGGQKRRLSLAIALSKRPHVVFLDEPTSGLDAAAAANIMFYLKEVAK 310
                 59********************************999999866655533 PP

>> TIGR03415  ABC_choXWV_ATP: choline ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.7   0.1   2.6e-10   1.7e-08      42     197 ..     147     295 ..     137     321 .. 0.84

  Alignments for each domain:
  == domain 1    score: 31.7 bits;  conditional E-value: 2.6e-10
   TIGR03415  42 dasldveeGeilvlmGlsGsGkssllravn..glnpvsrGkvlvkdedkevdvakcdeatlrklrtkrvsmvfqkfallPW.rtveenvafGlels..GvakaerrkrveeqlelvglaeWadkkvgelsGGmqqrvGlarafateadillmdePfsaldP 197
                 d s +ve G +l +mG sG+Gk++ll  +         rG v +  ++ ++d +            kr + v q+   l W ++ ++ +++ + +     +kae+r+ v + +e    ++  +   + lsGG ++r+ la a++    ++++deP s ld 
  MMETSP1137-20121227|1213_1 147 DLSGTVEAGSVLAIMGPSGAGKTTLLNMLMleDTGGDPRGVVALGGNEFTLDTY------------KRHACVVQQTDTLWWpLSPRDHIGYAVRMYqpTFTKAEQRDLVVDWVESCKNTKAGNVFFKGLSGGQKRRLSLAIALSKRPHVVFLDEPTSGLDA 295
                 67889********************97653003333345555555555555544............5567899999999996899*********9633689**********************************************************96 PP

>> TIGR01271  CFTR_protein: cystic fibrosis transmembrane conductor regulator (CFTR)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.0   3.9e-07   2.5e-05    1200    1299 ..     104     209 ..      88     214 .. 0.76
   2 !   11.4   0.0   0.00012    0.0079     549     627 ..     263     344 ..     243     354 .. 0.71

  Alignments for each domain:
  == domain 1    score: 19.7 bits;  conditional E-value: 3.9e-07
   TIGR01271 1200 vlvienkhvkkiwpsggqmtvkdlta...kyteag...ravlqdlsfsveagqrvgllgrtgsgkstllsallrllstegeiq.idgvswnsvtlqkwrkafgvipq 1299
                   +v + +  kk+ p++ q++   +t+   k  e+g   r +l+dls +veag  + ++g +g+gk+tll  +l l +t g+ + +  +  n  tl+++++   v+ q
  MMETSP1137-20121227|1213_1  104 SIVKQSSFSKKTTPADFQFKNCTFTVmvkKKGEKGkvpRKLLDDLSGTVEAGSVLAIMGPSGAGKTTLLN-MLMLEDTGGDPRgVVALGGNEFTLDTYKRHACVVQQ 209 
                  55666677777888877777666665222444555444679***************************97.567999999854377888899999999998888877 PP

  == domain 2    score: 11.4 bits;  conditional E-value: 0.00012
   TIGR01271 549 lsggqrarislaravykdadlylldspfsyldvvtekeifesclckllanktrilvtsk...lehlkkadkilllhegscyf 627
                 lsggq+ r+sla a+ k   + +ld p s ld  +  +i+        a+   il t +      +   dk+l+l  g   +
  MMETSP1137-20121227|1213_1 263 LSGGQKRRLSLAIALSKRPHVVFLDEPTSGLDAAAAANIMFYLKEVAKAESIAILCTIHqpsTAVFNGFDKVLFLTSGRPAY 344
                 9*******************************99999986543333333444444443311123344556666666666555 PP

>> TIGR00954  3a01203: peroxysomal long chain fatty acyl transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.6   0.0   0.00094      0.06     467     499 ..     143     175 ..     138     177 .. 0.91
   2 !   13.9   0.0   4.6e-05    0.0029     584     642 ..     263     325 ..     257     335 .. 0.84

  Alignments for each domain:
  == domain 1    score: 9.6 bits;  conditional E-value: 0.00094
   TIGR00954 467 vlieeLsfevksGnhlLiiGPnGcGKsslfRil 499
                 +l+++Ls  v+ G+ l i+GP G GK  l  +l
  MMETSP1137-20121227|1213_1 143 KLLDDLSGTVEAGSVLAIMGPSGAGKTTLLNML 175
                 7899***********************998765 PP

  == domain 2    score: 13.9 bits;  conditional E-value: 4.6e-05
   TIGR00954 584 LsgGekqRiamARlfyHkPkfavLDEcts....AvsvdvEdklyelakevgitllsvshrksL 642
                 LsgG+k R+++A  +  +P+ + LDE ts    A + ++  +l e ak   i++l   h++s 
  MMETSP1137-20121227|1213_1 263 LSGGQKRRLSLAIALSKRPHVVFLDEPTSgldaAAAANIMFYLKEVAKAESIAILCTIHQPST 325
                 9***************************94444556667777778899999999999998875 PP

>> TIGR00957  MRP_assoc_pro: multi drug resistance-associated protein (MRP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.2   0.0   6.9e-08   4.4e-06     653     800 ..     144     302 ..      97     412 .. 0.69

  Alignments for each domain:
  == domain 1    score: 22.2 bits;  conditional E-value: 6.9e-08
   TIGR00957 653 tlngltlsipegalvavvgqvgcgkssllsallaemd..kvegkvalkgsv....ayvpqqawi.qndsl......renilfgkaleekyykavleacalladleilpsgdrteigekgv.nlsggqkqrvslaravysdadiyllddplsavdahvakhif 800
                  l+ l+ ++  g+++a++g+ g gk++ll  l+ e       g val g      +y    + + q d+l      r+ i +  ++ ++ + ++ +   l+ d   + s  +t+ g+     lsggqk+r+sla a+     + +ld+p s +da  a  i+
  MMETSP1137-20121227|1213_1 144 LLDDLSGTVEAGSVLAIMGPSGAGKTTLLNMLMLEDTggDPRGVVALGGNEftldTYKRHACVVqQTDTLwwplspRDHIGYAVRMYQPTFTKAEQR-DLVVD--WVESCKNTKAGNVFFkGLSGGQKRRLSLAIALSKRPHVVFLDEPTSGLDAAAAANIM 302
                 4778888999*********************998865125678999998642222343333333123444222233677777776666666655444.34433..456677777776544149********************************9998875 PP

>> TIGR00630  uvra: excinuclease ABC subunit A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   0.0     0.023       1.5     623     654 ..     145     176 ..     122     181 .. 0.87
   2 !   13.6   0.0   4.7e-05     0.003     828     879 ..     262     310 ..     254     321 .. 0.84

  Alignments for each domain:
  == domain 1    score: 4.7 bits;  conditional E-value: 0.023
   TIGR00630 623 lkdidvsiplglltvitGvsgsGkstLindiL 654
                 l d++ ++  g + +i G+sg+Gk tL+n ++
  MMETSP1137-20121227|1213_1 145 LDDLSGTVEAGSVLAIMGPSGAGKTTLLNMLM 176
                 77888899999*****************9765 PP

  == domain 2    score: 13.6 bits;  conditional E-value: 4.7e-05
   TIGR00630 828 tLsGGeaqrvkLakeLskrstgktlyilDePttGLhfdDikkLlevlqrlvd 879
                  LsGG  +r+ La  Lskr     +  lDePt GL  +  ++++  l+++++
  MMETSP1137-20121227|1213_1 262 GLSGGQKRRLSLAIALSKRP---HVVFLDEPTSGLDAAAAANIMFYLKEVAK 310
                 69***************996...47789*******99999998888877665 PP

>> TIGR00929  VirB4_CagE: type IV secretion/conjugal transfer ATPase, VirB4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.1   7.9e-06   0.00051     441     460 ..     159     178 ..     150     191 .. 0.87
   2 ?   -1.9   0.0       2.3   1.5e+02     630     674 ..     276     319 ..     273     322 .. 0.86

  Alignments for each domain:
  == domain 1    score: 16.2 bits;  conditional E-value: 7.9e-06
   TIGR00929 441 lIfGptgsGKTvllnfllaq 460
                 +I+Gp+g+GKT+lln+l+ +
  MMETSP1137-20121227|1213_1 159 AIMGPSGAGKTTLLNMLMLE 178
                 69***************976 PP

  == domain 2    score: -1.9 bits;  conditional E-value: 2.3
   TIGR00929 630 aldgrrfliiiDEawkllgdpvfeakikeilktlRKaNgivvlat 674
                 al +r+ ++++DE  + l+  + +a+i  +lk + Ka  i +l t
  MMETSP1137-20121227|1213_1 276 ALSKRPHVVFLDEPTSGLDA-AAAANIMFYLKEVAKAESIAILCT 319
                 6889*********9999965.678899999999999999988865 PP

>> TIGR02322  phosphon_PhnN: phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   0.1   0.00013    0.0084       1      21 [.     155     175 ..     155     188 .. 0.85

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 0.00013
   TIGR02322   1 grlilvvGpsGaGKDtlldla 21 
                 g +++++GpsGaGK tll+++
  MMETSP1137-20121227|1213_1 155 GSVLAIMGPSGAGKTTLLNML 175
                 56789*************986 PP

>> TIGR02237  recomb_radB: DNA repair and recombination protein RadB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.7   0.0   0.00029     0.019       5      30 ..     148     173 ..     145     184 .. 0.86

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 0.00029
   TIGR02237   5 lgGgvergiitqiyGpggsGKtnial 30 
                 l G ve+g ++ i Gp g+GKt++  
  MMETSP1137-20121227|1213_1 148 LSGTVEAGSVLAIMGPSGAGKTTLLN 173
                 68********************9854 PP

>> TIGR03819  heli_sec_ATPase: helicase/secretion neighborhood ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.9   0.0   0.00016      0.01     159     200 ..     136     177 ..     122     210 .. 0.76

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 0.00016
   TIGR03819 159 aagaiapevaelleaivaarlallvsGgtGsGkttLLsalLa 200
                 ++g +++++ + l+  v+a   l + G +G+GkttLL+ l+ 
  MMETSP1137-20121227|1213_1 136 EKGKVPRKLLDDLSGTVEAGSVLAIMGPSGAGKTTLLNMLML 177
                 5678888888889999999999***************98753 PP

>> TIGR01194  cyc_pep_trnsptr: cyclic peptide transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.0   0.00079     0.051     361     503 ..     149     296 ..     113     341 .. 0.70

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 0.00079
   TIGR01194 361 dlriasGelvyivGenGcGkstliklllGlyi..pqeGellldGeavsdesrddyrdlfsavfadyylf..ddlvq.pdekkqasldqattylsrleledkvkvedlnystttdlstGqrkrlalvnayleerp.vllldewaadqdpa 503
                   +++ G ++ i+G  G Gk+tl+ +l+         G + l G+  + ++   +  +     + ++ +   d ++      q++  +a++    ++  +  k    +      ls Gq++rl+l  a l +rp v+ lde ++  d a
  MMETSP1137-20121227|1213_1 149 SGTVEAGSVLAIMGPSGAGKTTLLNMLMLEDTggDPRGVVALGGNEFTLDTYKRHACVVQQTDTLWWPLspRDHIGyAVRMYQPTFTKAEQRDLVVDWVESCKNTKAGNVFFKGLSGGQKRRLSLAIA-LSKRPhVVFLDEPTSGLDAA 296
                 55789999999***********99988754431145689999999999888665554444333333322122344414456788888888876677766666666655555789**********9988.56666367789988766654 PP

>> TIGR03263  guanyl_kin: guanylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.1   0.00036     0.023       3      24 ..     157     178 ..     155     182 .. 0.85

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 0.00036
   TIGR03263   3 livisgpsGvGKstlvkkllee 24 
                 ++ i gpsG+GK+tl+++l+ e
  MMETSP1137-20121227|1213_1 157 VLAIMGPSGAGKTTLLNMLMLE 178
                 67899************99865 PP

>> TIGR00231  small_GTP: small GTP-binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.1   0.00045     0.029       5      25 ..     157     177 ..     153     182 .. 0.87

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 0.00045
   TIGR00231   5 kivivGhvdvGKstLlnsllk 25 
                  ++i+G +++GK+tLln l  
  MMETSP1137-20121227|1213_1 157 VLAIMGPSGAGKTTLLNMLML 177
                 579**************9875 PP

>> TIGR03498  FliI_clade3: flagellar protein export ATPase FliI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   0.0    0.0017      0.11     135     165 ..     150     180 ..      92     194 .. 0.81
   2 ?   -3.3   0.0       8.8   5.7e+02     270     309 ..     351     390 ..     349     392 .. 0.79

  Alignments for each domain:
  == domain 1    score: 9.0 bits;  conditional E-value: 0.0017
   TIGR03498 135 ltlcrGqRlGifaGsGvGkstllsmlaraaa 165
                  t+ +G  l i   sG Gk+tll ml  +++
  MMETSP1137-20121227|1213_1 150 GTVEAGSVLAIMGPSGAGKTTLLNMLMLEDT 180
                 4788999******************976543 PP

  == domain 2    score: -3.3 bits;  conditional E-value: 8.8
   TIGR03498 270 lPrLLeRaGpGaegkGsitglftvLvdgDdhnePvaDavr 309
                 l   LeRaG  ++ +   + ++  L++ D     vaDav 
  MMETSP1137-20121227|1213_1 351 LVSFLERAGKPVAPNANPADFMLDLINKDFGHPEVADAVV 390
                 6678999999999888888888888888877777888885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (422 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       257  (0.0626524); expected 82.0 (0.02)
Passed bias filter:                      250  (0.0609459); expected 82.0 (0.02)
Passed Vit filter:                       131  (0.0319356); expected 4.1 (0.001)
Passed Fwd filter:                        64  (0.0156021); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              64  [number of targets reported over threshold]
# CPU time: 1.22u 0.24s 00:00:01.46 Elapsed: 00:00:00.94
# Mc/sec: 592.55
//
Query:       MMETSP1137-20121227|1214_1  [L=499]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (499 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       127  (0.0309605); expected 82.0 (0.02)
Passed bias filter:                       98  (0.0238908); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.16s 00:00:00.53 Elapsed: 00:00:00.42
# Mc/sec: 1568.16
//
Query:       MMETSP1137-20121227|1215_1  [L=95]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00034   16.9   0.0    0.00039   16.7   0.0    1.1  1  TIGR03346 chaperone_ClpB: ATP-dependent chaperone protein ClpB


Domain annotation for each model (and alignments):
>> TIGR03346  chaperone_ClpB: ATP-dependent chaperone protein ClpB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0   9.5e-08   0.00039     811     846 ..       2      37 ..       1      44 [. 0.91

  Alignments for each domain:
  == domain 1    score: 16.7 bits;  conditional E-value: 9.5e-08
   TIGR03346 811 arPlkraiqkelenplakkllagevkegdtiavdve 846
                 arPl+ra+q+  e+p+a+++l+g  ++g+++++d++
  MMETSP1137-20121227|1215_1   2 ARPLRRAVQRLCEDPIAEAMLDGFTSAGEMLELDYS 37 
                 9****************************9999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (95 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        52  (0.0126767); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.13u 0.14s 00:00:00.27 Elapsed: 00:00:00.27
# Mc/sec: 464.41
//
Query:       MMETSP1137-20121227|1216_1  [L=268]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0021   15.7   0.0     0.0037   14.9   0.0    1.4  1  TIGR00530 AGP_acyltrn: 1-acylglycerol-3-phosphate O-acyltransferases


Domain annotation for each model (and alignments):
>> TIGR00530  AGP_acyltrn: 1-acylglycerol-3-phosphate O-acyltransferases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   9.1e-07    0.0037      20     104 ..      85     166 ..      80     192 .. 0.75

  Alignments for each domain:
  == domain 1    score: 14.9 bits;  conditional E-value: 9.1e-07
   TIGR00530  20 vvanHqsnlDiltlsaafapplvfiAKkeLkeipflgill..lltgavfidRenkraiasllkaakkllkegravgvFpeGtrskg..r 104
                 v anH s+ D ++    ++ +++++A++      + g ll  l +  + i+R       ++  a+k    +     +FpeGtr  +  +
  MMETSP1137-20121227|1216_1  85 VLANHRSWGDFVMDP--YQTHCAVVARIAAVVACLGGGLLglLCDRIIVINRGR-----TSRDALKAKCARHDRYLIFPEGTRRASalD 166
                 789*******98755..5556999999998888877766511345678888887.....66677777777888889*******987542 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (268 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       142  (0.0346173); expected 82.0 (0.02)
Passed bias filter:                      127  (0.0309605); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.24u 0.18s 00:00:00.42 Elapsed: 00:00:00.41
# Mc/sec: 862.76
//
Query:       MMETSP1137-20121227|1217_1  [L=387]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.9e-18   62.9   0.0    3.1e-09   34.2   0.1    3.5  3  TIGR01607 PST-A: Plasmodium subtelomeric family


Domain annotation for each model (and alignments):
>> TIGR01607  PST-A: Plasmodium subtelomeric family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    3.5   0.0    0.0016       6.6       2      32 ..      93     124 ..      92     133 .. 0.84
   2 !   34.2   0.1   7.7e-13   3.1e-09      62     112 ..     142     193 ..     139     200 .. 0.91
   3 !   20.7   0.0   9.3e-09   3.8e-05     185     309 ..     239     354 ..     195     381 .. 0.74

  Alignments for each domain:
  == domain 1    score: 3.5 bits;  conditional E-value: 0.0016
   TIGR01607   2 flnkdGlllktyswivk.kalGiillihGlks 32 
                 f +  Gl +  y w  + ka G++ ++hGl++
  MMETSP1137-20121227|1217_1  93 FKDALGLEIAVYCWPARgKAKGVVQMLHGLDG 124
                 55566999******87659***********87 PP

  == domain 2    score: 34.2 bits;  conditional E-value: 7.7e-13
   TIGR01607  62 ykdswieklnkeGysvyaldlqghGesdgl.enlrghikkfddlvddviqyi 112
                 y +sw+e ln+ Gy+vya d +g G+s+g  + l     ++dd+vdd +q +
  MMETSP1137-20121227|1217_1 142 YVGSWLEALNDAGYTVYAADYNGMGRSEGVvDGLPSMCFTWDDYVDDXVQLF 193
                 889*************************96378***************9976 PP

  == domain 3    score: 20.7 bits;  conditional E-value: 9.3e-09
   TIGR01607 185 isikevaskdsskfkylylpvvkllsriaptvriskklkyekfpyvndlikfdkyrydgtitkklaselikaldtlnkdidyipkdipllfihskddcicyyegvvlfynklnienkelytvedm 309
                 is+++   +     + l lpv+ +ls  +p + +  k +   + +  ++     y y g i+ +  +e +++ d+  ++++++   +pll++h+k+d+ c yeg +++  ++ +  kel   +dm
  MMETSP1137-20121227|1217_1 239 ISFNSLKAQP---TNKLLLPVAGVLSATVPWLAVGVKARTTVSDFEASVGL--PYYYTGPIRARAGTEGMRCGDEAAEQVKKL--TMPLLLMHTKKDSFCDYEGSQILLRNAGSAVKELI--DDM 354
                 5554444433...35578999999999999999998888888888776654..578999999999999999999999999998..58*******************************95..333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (387 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        94  (0.0229157); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.16s 00:00:00.49 Elapsed: 00:00:00.52
# Mc/sec: 982.30
//
Query:       MMETSP1137-20121227|1218_1  [L=267]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.099    8.0  10.1       0.14    7.6   7.0    1.2  1  TIGR00927 2A1904: K+-dependent Na+/Ca+ exchanger


Domain annotation for each model (and alignments):
>> TIGR00927  2A1904: K+-dependent Na+/Ca+ exchanger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   7.0   3.4e-05      0.14     715     805 ..     173     264 ..     142     267 .] 0.72

  Alignments for each domain:
  == domain 1    score: 7.6 bits;  conditional E-value: 3.4e-05
   TIGR00927 715 eeepaklpevtvtpapapedkgdqe.edpgsqgdvaeaeakgertgeeaeaeteaegekdeesggeaeqegeseekaeeeseGeieaerkge 805
                   +pa   + t +pap  e+  d   e  g+  d++++e+++ r+g+e+ ++   +++k++++++e+++++e++ k ++es G  + er  +
  MMETSP1137-20121227|1218_1 173 AAQPATATTATWAPAPRRESAPDVApEAVGAGTDSSDSEKQAGREGGEEGKQRSRKSHKHKRDKKEKKEKKEKKRKRDHESRGSKRPERMRH 264
                 3456666666666666666666653266788888999999999999998888888999999999999999999999999****999987654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (267 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       239  (0.0582643); expected 82.0 (0.02)
Passed bias filter:                      108  (0.0263286); expected 82.0 (0.02)
Passed Vit filter:                        18  (0.0043881); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.27u 0.14s 00:00:00.41 Elapsed: 00:00:00.46
# Mc/sec: 766.11
//
Query:       MMETSP1137-20121227|1219_1  [L=425]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (425 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        87  (0.0212092); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.14s 00:00:00.44 Elapsed: 00:00:00.51
# Mc/sec: 1099.91
//
Query:       MMETSP1137-20121227|1220_1  [L=994]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
          0 1125.4   0.0          0 1125.2   0.0    1.0  1  TIGR00239 2oxo_dh_E1: oxoglutarate dehydrogenase (succinyl-transferring), E1 component
    3.2e-17   60.2   0.0    5.7e-17   59.4   0.0    1.3  1  TIGR03182 PDH_E1_alph_y: pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit
    9.3e-12   42.3   0.0    1.5e-11   41.6   0.0    1.2  1  TIGR03181 PDH_E1_alph_x: pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit


Domain annotation for each model (and alignments):
>> TIGR00239  2oxo_dh_E1: oxoglutarate dehydrogenase (succinyl-transferring), E1 component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ! 1125.2   0.0         0         0       1     930 [.      36     992 ..      36     993 .. 0.94

  Alignments for each domain:
  == domain 1    score: 1125.2 bits;  conditional E-value: 0
   TIGR00239   1 flsganasyieelyeaylkdPssvdaswketfdelsktkvateqfqap.srsdfkrl......akeaekgavtvsdvdenvslvkvlqlirayrvrGhlkanldPlgis..rkdekkveeldlsyyglteedlkeeinigasvlkkd...akkklslkelvealkktycssigveythvkdkeekeWlqekiesgekaqftseekksvlerltaaeglerflsakfpgakrfsleGldalvPvlkelirrsvksGvedvvlGmahrGrlnvlvnvlgkkneslfsefkgksk...sevieGtGdvkyhlGrissdktvdgkqvalslaanPshleivsPvviGsvrarlerkndlkektkvlailihGdaavaGqGvvqetlnlsklkgysvGGtiriiinnqiGfttepaearstkyasdlakaieaPivhvnaddpeavafvvklaveyrkkfkkdvlidlvgyrrhGhneadePsatqPllykkikkhptsrkvyadklvkegvvteedvde....vanlyrdalekakqvvpskreletaalewlkelaeevse.eypdkveekrlkelaklvselpeglevhkrvakiykdrtkaiadgeklldWalaealafatllkdGvnvrlsGedserGtfaqrhavlhdqes.gaeyvPlshlsnekasfevadsvlseesvlafeyGyavtsPetlvlWeaqfGdfanaaqvvidqfissGeqkWgrksGlvlllPhGyeGqGPehssarlerflqlaaed.................nlqvvvpttpaqvfhilrrqalrelrrPlvvlspksllrhPlavssleel.aegtfqpvieeieesklildkeevkrlvllsGkvyidlleqrrengkkdvaivrieqlyPfPakdlkellekyanlkeivWvqeePlnmGaWayseprleevipeg..vkvryaGrrasaspavGskslhlkkekdllkdv 930
                 fl+g+   y+e++y+a++kdP sv++sw++ f ++ +  +   +f  p s+   + l      ++ a++    +    e+  + kv+ql++ay+ rGh   +ldPlgi+     ++++ +l++s+yg+te+d+++ei+++  ++k +    + ++ lk+++  l+++y s+ig+e++h+ d e+ +W+++kie+        +  k +l+rl++ + +e fl +k+   krf+leG + l+P ++e+i+ s+ +Gve+++lGmahrGrlnvl+nv++k+ e++f ef g s+   +++  G+GdvkyhlG+   + t +gkqv++sl+anPshle v+Pvv+G+ ra+++ + d  e++ +++ilihGdaa++GqGvv et++l++l++y +GGti+i+innqiGftt+p+ +rs +y++d+ak i+aPi+hvn+dd++av+ v++la+++r++fk+dv+id+v+yr+hGhne+d+P +tqP +y ++kk++++ + y +kl++egv+t+e + e    v+ +++  l++++++vp+k ++  + ++++  l+ ++++ +  + v+ ++lk++++ +++lp  l  hk+v+ +y +r k+++d++  +dWa+ae+la+++ll +G  vr+sG+d+erGtf++rhav+hdq +   +y Pl++++  +a+f   +s+lse +vl+fe Gya+++P  l++WeaqfGdfan+aq +idqfissGeqkW r+sGlv+llPhG+eGqGPehssarlerflq++ +d                 n+qvv+ ttpa++fh+lrrq  re+r+Pl+v+spksllrh l +s+l+e+  +++f   +   + ++   ++e++++lvl+sGkvy+dll +r ++   dvai r eq+ PfP+++++   +ky+n  eivW+qeeP+n GaW+y++pr++++++e   v+  yaGr++sa++++G+ s h k++++l++ +
  MMETSP1137-20121227|1220_1  36 FLTGTSSVYVEDMYNAWKKDPASVHVSWQSFFSSMEAGAPPGAAFTPPpSIRAGQSLaaaavsSEPAHRPHELARGEGEERDILKVMQLVHAYESRGHNICDLDPLGIYeaDLANDTPIDLEISNYGFTEADMEKEIQLTGIATKGFfaeDRARMKLKDIIARLRQVYASTIGFEFMHIWDHEQVNWIRDKIETV-------DAAKTILDRLAWSDHFEAFLASKYSTVKRFGLEGCEVLIPGMEEIIDSSASLGVENIILGMAHRGRLNVLANVVKKPMEHIFCEFSGVSTpspDDDFSGSGDVKYHLGMSHTRSTASGKQVNISLVANPSHLEAVNPVVEGKCRAKQHYTGD-AERAHSMPILIHGDAAFSGQGVVFETMGLADLHNYTTGGTIHIVINNQIGFTTDPRSSRSSPYCTDVAKCIQAPIFHVNGDDVDAVVQVCRLAAQWRHRFKRDVVIDIVCYRKHGHNEIDNPMFTQPQMYTAVKKQRSTLNKYFHKLEQEGVITNEAARElsegVKMELQRHLDNSRNYVPKKSDWLSSNWKGM--LPMNIQArDLLTGVDIETLKKVGQAITTLPADLTPHKKVRELYANR-KKMFDENLPIDWAVAEQLAWGSLLLEGNHVRISGQDVERGTFSHRHAVIHDQANwPRTYLPLQNVDPGQAAFMACNSSLSEFAVLGFELGYALENPASLIMWEAQFGDFANTAQCMIDQFISSGEQKWLRQSGLVMLLPHGFEGQGPEHSSARLERFLQMSDDDedvfparigrqqqaqaaNWQVVNVTTPANYFHVLRRQVVREFRKPLIVMSPKSLLRHRLVKSDLSEMgHNTRFMRYL--ADSGEGLVEPEKIRKLVLCSGKVYYDLLAERTKQMITDVAIGRCEQISPFPHDHIQADAKKYPNA-EIVWCQEEPKNAGAWSYVKPRITTAAREVreVHATYAGRKPSAAASTGHASQHAKEQQQLIEAA 992
                 68889999***************************99887777776655544433330001114556677777888889999***************************555679999********************99888776665567888999***********************************77.......66789*********************************************************************************987522256679******************************************************.9*************************************************************************************************************************************************************99777777788999**************99998865..6666654146788999******************************.****************************************************883689*******************************************************************************************************99999*****************************************************************4478899988..56666899********************************************************5.8**************************98668889*************************9876 PP

>> TIGR03182  PDH_E1_alph_y: pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.4   0.0   4.2e-20   5.7e-17     133     307 ..     388     567 ..     367     573 .. 0.90

  Alignments for each domain:
  == domain 1    score: 59.4 bits;  conditional E-value: 4.2e-20
   TIGR03182 133 evtlaffGdgavn.qGqvyEslnlaalwklP...vifviennkyamGtaverssaekdlakkgesfgikglevdGmdvlavreaakeavervragkgPvllelktyRfrgHslsDpakyRskeeveevk.krdpieklkkaliekgllseeelkeiekevkaeveeavefaeespepdve 307
                 ++ + + Gd+a + qG v+E++ la l++      i+++ nn+ +  t  + s +++  +  ++  + + ++v+G dv av ++ + a+++ ++ k+ v++++ +yR +gH  +D   + + +  ++vk +r  ++k  ++l ++g++++e  +e+ + vk e+++  +++++    + +
  MMETSP1137-20121227|1220_1 388 SMPILIHGDAAFSgQGVVFETMGLADLHNYTtggTIHIVINNQIGFTTDPRSSRSSPYCTDVAKCIQAPIFHVNGDDVDAVVQVCRLAAQWRHRFKRDVVIDIVCYRKHGHNEIDNPMFTQPQMYTAVKkQRSTLNKYFHKLEQEGVITNEAARELSEGVKMELQRHLDNSRNYVPKKSD 567
                 55667889*997559*************9863337**************999999999999*******************************************************************98999********************************999999886655555 PP

>> TIGR03181  PDH_E1_alph_x: pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.6   0.0   1.1e-14   1.5e-11     143     318 ..     386     565 ..     375     584 .. 0.89

  Alignments for each domain:
  == domain 1    score: 41.6 bits;  conditional E-value: 1.1e-14
   TIGR03181 143 ekevavayiGdGgts.egdfyealnfAavfkap...vvfvvqNNqwAISvprskqtaaktlaqkavaagipgvqvDGnDvlAvyevvkealekArkgegPtLiEavtYRlgaHttaDdptrYrskeeeeewkkkdPiarlrkyLeekglldeekeeeleeeaeeevkeaveeveelpkpk 318
                 +++  + ++Gd + s +g + e + +A +++     ++ +v NNq    +  +    ++   + a  +  p  +v G Dv Av++v + a +   + +  ++i++v+YR   H   D+p   + +  +  +k++  ++++ + Le++g++++e ++el e ++ e ++ +++ +++ ++k
  MMETSP1137-20121227|1220_1 386 AHSMPILIHGDAAFSgQGVVFETMGLADLHNYTtggTIHIVINNQIGFTTDPRSSRSSPYCTDVAKCIQAPIFHVNGDDVDAVVQVCRLAAQWRHRFKRDVVIDIVCYRKHGHNEIDNPMFTQPQMYTAVKKQRSTLNKYFHKLEQEGVITNEAARELSEGVKMELQRHLDNSRNYVPKK 565
                 556678899***987588999********99863337***********9998888999999**********************************************************99999999998888********************************999998888776655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (994 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       132  (0.0321794); expected 82.0 (0.02)
Passed bias filter:                      101  (0.0246221); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.69u 0.20s 00:00:00.88 Elapsed: 00:00:00.66
# Mc/sec: 1987.84
//
Query:       MMETSP1137-20121227|1222_1  [L=1632]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.8e-23   81.0   2.2    1.8e-23   81.0   1.5    2.9  3  TIGR03921 T7SS_mycosin: type VII secretion-associated serine protease mycosin
  ------ inclusion threshold ------
      0.036   11.8   1.9        4.4    5.0   2.1    2.4  2  TIGR01201 HU_rel: putative DNA-binding protein
       0.99    6.4  50.2        2.8    4.9  34.8    1.7  1  TIGR02794 tolA_full: protein TolA


Domain annotation for each model (and alignments):
>> TIGR03921  T7SS_mycosin: type VII secretion-associated serine protease mycosin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.9   0.4      0.88   1.2e+03     186     221 ..     391     427 ..     367     460 .. 0.59
   2 ?   -3.6   6.1       0.7   9.5e+02      67     145 ..     634     717 ..     624     870 .. 0.74
   3 !   81.0   1.5   1.3e-26   1.8e-23      12     257 ..     952    1204 ..     948    1215 .. 0.77

  Alignments for each domain:
  == domain 1    score: -3.9 bits;  conditional E-value: 0.88
   TIGR03921 186 gepssfslagpwvdvaApgenlvsls.pggdglasav 221
                  ++s  sl+g   + +A + +l+ l  p+ + l++++
  MMETSP1137-20121227|1222_1 391 TQQSTPSLTGTTSRASAAAVRLITLYsPRVRPLVESL 427
                 4556667777777777777777666545555555555 PP

  == domain 2    score: -3.6 bits;  conditional E-value: 0.7
   TIGR03921  67 gsGfvGvAPdakilpirqtskafedkeeksavgdletlAkairrAadsgAkVINiSevacl.....saksaadeselgaAvky.a 145
                 + +++  AP+++i+  + +s++ + ++ ++a+   ++l +a+ rAa   A   + S +a+      + ++a++ ++ ++A++  a
  MMETSP1137-20121227|1222_1 634 EAAAAATAPRVRIVYGKTASAKAA-AKRAEAAAARKALNEAVERAAAASAAAAAASAAASAaivevERATAVALRAADDALEAeA 717
                 455666799999999999999888.777778888889999999999998888888776655454444444444445555555444 PP

  == domain 3    score: 81.0 bits;  conditional E-value: 1.3e-26
   TIGR03921   12 GagvtVAViDtGvd.rhPrLpgev.......aGgDlve.....sgdged..dcdghGTlvAglIAarpaegsGfvGvAPdakilpirqtskafe...dkeeksavgdletlAkairrAadsgAkVINiSevaclsaksaadeselgaAvkyalekdvvvvAaagnegqdgsktvvyPAay.....pgVlaVgsidrsgepssfslagpwvdvaApgenlvslspggdglasavgespleGtSfAaplVsgvAaLvrskfpeltaaqvir 257 
                  G+ v   ViD+G++ +h +    +       +  +++e      g+ e+  d  ghGT vAg +A+r+      +G+AP a+i ++++++ +     +  e++ +  +++  + ir+   +g k   + +    s++++a+ ++l++       +++ v +aagn+  d+ +  ++PAa+       V++V++   + ++++fs +g  vd+ Apg+ ++s++p  +   +      ++GtS+AaplV+gv  Lv +++p  ++  v +
  MMETSP1137-20121227|1222_1  952 GENVHLFVIDSGINhEHSDFLTIDgrssrvsTSYNALEriecpPGKMEAcyDTGGHGTHVAGTVAGRK------YGLAPCATIHSVKIMEGHAGtsiNYLETAIDWIIKYHNANIRYKWANGKKLNSV-V--VASLNAEAKVQNLDNMFVAMTWNGIAVSVAAGNNDVDACQ--SSPAAAggksgSAVVTVAASSLDDTKAAFSNWGSCVDLFAPGTGIASAAPFVTDGYAV-----MSGTSMAAPLVAGVMCLVFEAYPRYNPLTVKS 1204
                  777888899999998888764433110111233333335657633333335888*************8......***************998884444445555555677777888888888887666.3..348999999999**999999999**9*9*****9888866..8999863211346************************************876544444.....47************************999876 PP

>> TIGR01201  HU_rel: putative DNA-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   2.1    0.0032       4.4      87     150 ..     626     689 ..     618     699 .. 0.80
   2 ?    2.9   0.0     0.014        19      35      66 ..    1213    1244 ..    1197    1250 .. 0.87

  Alignments for each domain:
  == domain 1    score: 5.0 bits;  conditional E-value: 0.0032
   TIGR01201  87 kksgveeaeevnaeqvkkarvnFrpekrlkaatreerlalaerhLdfsllkkakaakalgrtaa 150
                  ++++eeae   a++  ++r+++   +  kaa+++ ++a a+++L+ ++ + a a++a++ + a
  MMETSP1137-20121227|1222_1 626 EAEAAEEAEAAAAATAPRVRIVYGKTASAKAAAKRAEAAAARKALNEAVERAAAASAAAAAASA 689
                 345889999999*******************************999888888777773333332 PP

  == domain 2    score: 2.9 bits;  conditional E-value: 0.014
   TIGR01201   35 eiaeliseeStlspGdVkgildrlakvlrreL 66  
                   ++e ++   ++s++ V+gil+r +++  +eL
  MMETSP1137-20121227|1222_1 1213 GLIEAVAPSKSVSEAYVHGILKRPGYLTVQEL 1244
                  6899******************9888766665 PP

>> TIGR02794  tolA_full: protein TolA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9  34.8    0.0021       2.8      93     250 ..     613     759 ..     589     806 .. 0.40

  Alignments for each domain:
  == domain 1    score: 4.9 bits;  conditional E-value: 0.0021
   TIGR02794  93 eqarqkelekqraaaekaakkaeeaakekeekkkqaeeakakqaaEakakaeaeaKaekkakeeAakkaEeeakakaaaeakkkaEa....eeakkkaeaeakKakaeaeaKakae.......eakaKaeae...AkaKAeaeAkaKaeaeakakakaeaerkaakqeaela 250
                 e+++      +++a+++aa +ae+aa + + + +     k  +a+ a+++aea+a  ++ka  eA  +a+++ +a aaa a + a a    e                   +a a        +  a+aea+   Aka Aeae ++ a+ +++ + +a+ + +a +++ +++
  MMETSP1137-20121227|1222_1 613 EREHMNAR-MRKLAEAEAAEEAEAAAAATAPRVRIV-YGKTASAKAAAKRAEAAA--ARKALNEAVERAAAASAAAAAASAAASA-AivevE-------------------RATAValraaddALEAEAEAQlhiAKAEAEAETESEAQDTQAGASRADTRMEA-DESHAAD 759
                 22222221.222233333333333333322222222.222222233333333333..3444444433333333233333333333.123221...................22122221111112222222232332222223222222223322333333333.2222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1632 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       367  (0.0894686); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                        19  (0.00463189); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.06u 0.16s 00:00:01.22 Elapsed: 00:00:00.88
# Mc/sec: 2447.80
//
Query:       MMETSP1137-20121227|1223_1  [L=161]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (161 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       115  (0.0280351); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.17s 00:00:00.34 Elapsed: 00:00:00.25
# Mc/sec: 850.01
//
Query:       MMETSP1137-20121227|1224_1  [L=71]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (71 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        37  (0.00901999); expected 82.0 (0.02)
Passed bias filter:                       33  (0.00804486); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.17s 00:00:00.29 Elapsed: 00:00:00.33
# Mc/sec: 283.98
//
Query:       MMETSP1137-20121227|1225_1  [L=228]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (228 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        57  (0.0138957); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.12s 00:00:00.32 Elapsed: 00:00:00.53
# Mc/sec: 567.80
//
Query:       MMETSP1137-20121227|1226_1  [L=145]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (145 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        52  (0.0126767); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.15s 00:00:00.29 Elapsed: 00:00:00.28
# Mc/sec: 683.51
//
Query:       MMETSP1137-20121227|1227_1  [L=520]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (520 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        68  (0.0165773); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.15s 00:00:00.50 Elapsed: 00:00:00.46
# Mc/sec: 1492.05
//
Query:       MMETSP1137-20121227|1228_1  [L=270]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (270 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        40  (0.00975134); expected 82.0 (0.02)
Passed bias filter:                       40  (0.00975134); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.17s 00:00:00.38 Elapsed: 00:00:00.28
# Mc/sec: 1228.86
//
Query:       MMETSP1137-20121227|1229_1  [L=99]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (99 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       198  (0.0482691); expected 82.0 (0.02)
Passed bias filter:                      178  (0.0433935); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.18s 00:00:00.35 Elapsed: 00:00:00.48
# Mc/sec: 272.23
//
Query:       MMETSP1137-20121227|1230_1  [L=163]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (163 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        93  (0.0226719); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.10s 00:00:00.29 Elapsed: 00:00:00.56
# Mc/sec: 384.18
//
Query:       MMETSP1137-20121227|1231_1  [L=213]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (213 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        67  (0.0163335); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.13s 00:00:00.32 Elapsed: 00:00:00.35
# Mc/sec: 803.25
//
Query:       MMETSP1137-20121227|1232_1  [L=78]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (78 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        50  (0.0121892); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.13s 00:00:00.26 Elapsed: 00:00:00.66
# Mc/sec: 155.99
//
Query:       MMETSP1137-20121227|1233_1  [L=99]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (99 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        81  (0.0197465); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.17s 00:00:00.32 Elapsed: 00:00:00.30
# Mc/sec: 435.56
//
Query:       MMETSP1137-20121227|1234_1  [L=338]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (338 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       152  (0.0370551); expected 82.0 (0.02)
Passed bias filter:                      101  (0.0246221); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.17s 00:00:00.44 Elapsed: 00:00:00.28
# Mc/sec: 1593.30
//
Query:       MMETSP1137-20121227|1235_1  [L=991]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.4e-65  218.6   0.0    5.4e-65  217.5   0.0    1.5  1  TIGR01982 UbiB: 2-polyprenylphenol 6-hydroxylase
     0.0026   14.8   0.0      0.013   12.5   0.0    1.9  2  TIGR02721 ycfN_thiK: thiamine kinase


Domain annotation for each model (and alignments):
>> TIGR01982  UbiB: 2-polyprenylphenol 6-hydroxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  217.5   0.0   2.7e-68   5.4e-65      42     426 ..     352     744 ..     323     753 .. 0.88

  Alignments for each domain:
  == domain 1    score: 217.5 bits;  conditional E-value: 2.7e-68
   TIGR01982  42 earkeslgerlrlaleelGPifiKlGQvlstRaDllpeeiaeeLslLqdkvppfdlkaarkvieaelgk.pveelF..aefeekPlAaASiaQvhkAvlvegkeVavKvlRPgiekkieadikllellaklvekllpeakrlrptevvkefektlkeEldlrlEaanaselkenfkndk...klivPevyweltservltlewidgipvsdleklkeaGldlkalaenlvesflkqvlrdgfFHaDlHpGNilvakdgkiialDfGivgrlseeerrylaeillgflerdykrvaevhleagyvpsdtdlaeleqairavgepiv.....gkplkeisigklLaklfkitekfe...levqpeLlLLqKtlltvEGvgrqldpdldlwkvaepvvkkli 426
                 +++ e+++++l++ l +lGP+fiK GQ  s R+Dllp+ +++ L+ Lqd+vppf++k+a +++++elg+   + lF  a +  +P+AaAS++Qv+k +l++g+ VavKv+RPg+ + i+ d++l++   + + kl+      +     +e +k   +Eld+++Eaana+++ e +k  +   k+  P v+ +  ++rvlt+ew+dg  ++          d  +l +  + + l+++l  g  H D+HpGN+l ++dgk+ +lD G+v ++ ++ +  l+e +  +  +dy++v   ++++g+vp   +     + +  +  + +     g  + ++ + +l+a++ +++++      +v+p ++ ++K++ ++EG+g q dp+ ++++ + p+v++ i
  MMETSP1137-20121227|1235_1 352 NSKAEQRAKQLTALLTALGPTFIKAGQSASIRSDLLPPTYITGLTALQDQVPPFSAKEAEAILDEELGEmARKRLFgsAGLPARPVAAASLGQVYKTKLLSGTPVAVKVQRPGMLDIIALDMHLIRDYGAPIGKLFGVPG--DLAGTAEEWAKGFVAELDYAREAANAAQFSEDLKGTPlegKVFAPPVVADASTKRVLTTEWVDGERLDKSSV----AADVPRLCSVAMITYLQMMLGSGTLHCDPHPGNLLRTSDGKLCILDWGLVTSIAPDLQLTLIEHVAHLTAEDYDKVPGDLVRLGFVPPGGESIVRDNGVADFLSYTYstwtsGGGAAKLDVPALFARVRELAAESPggiFQVPPYFAYIAKSFSVLEGIGLQADPNYSIVRETLPYVSQRI 744
                 23357899*************************************************************66667783355889****************************************************96666..667889**************************998654449***********************98865443....35889999999999*************************************************************************987766666666666665541111256799**************9986434489***********************************99866 PP

>> TIGR02721  ycfN_thiK: thiamine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.0     0.055   1.1e+02      51      93 ..     532     577 ..     521     585 .. 0.73
   2 !   12.5   0.0   6.2e-06     0.013     140     186 ..     579     626 ..     555     638 .. 0.78

  Alignments for each domain:
  == domain 1    score: -0.4 bits;  conditional E-value: 0.055
   TIGR02721  51 lklaPkvil..vneewllvewleGevitkd.efvaldellelaall 93 
                   +aP v++   +++ l  ew++Ge + k      ++ l+++a + 
  MMETSP1137-20121227|1235_1 532 KVFAPPVVAdaSTKRVLTTEWVDGERLDKSsVAADVPRLCSVAMIT 577
                 5578877752256788999******998752345677888888765 PP

  == domain 2    score: 12.5 bits;  conditional E-value: 6.2e-06
   TIGR02721 140 epaplklallHlDvhaeNlvkteqG.lklIDWEYAsdgDialeLaavl 186
                 ++ +l    lH D h +Nl++t++G l ++DW   +   + l+L+++ 
  MMETSP1137-20121227|1235_1 579 LQMMLGSGTLHCDPHPGNLLRTSDGkLCILDWGLVTSIAPDLQLTLIE 626
                 5566677789***************55678***999999999999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (991 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       197  (0.0480254); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.64u 0.16s 00:00:00.80 Elapsed: 00:00:00.77
# Mc/sec: 1698.72
//
Query:       MMETSP1137-20121227|1236_1  [L=313]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (313 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        46  (0.011214); expected 82.0 (0.02)
Passed bias filter:                       42  (0.0102389); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.14s 00:00:00.37 Elapsed: 00:00:00.40
# Mc/sec: 1032.81
//
Query:       MMETSP1137-20121227|1237_1  [L=784]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00064   16.2   0.4     0.0071   12.8   0.3    2.1  1  TIGR03719 ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family
  ------ inclusion threshold ------
       0.34    8.6   4.2       0.79    7.5   2.9    1.6  1  TIGR03058 rpt_csmH: chlorosome envelope protein H


Domain annotation for each model (and alignments):
>> TIGR03719  ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.8   0.3   3.4e-06    0.0071      47     207 ..     457     621 ..     437     631 .. 0.61

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 3.4e-06
   TIGR03719  47 llkimaGvdkefeGealaaegikvGyleqePkldeektvrenveegvaeikealdrfeeisaklaeedadfdklleeqaklqekidaadawdldskleiamda....lrlpee...dakv..eklsG....GekrrvalcrlllekPdlllldePtnhldaesvaWlekflkey 207
                  +k++ Gv +  +G a +++g++vG+++q P+l  + +v en+  gv   + ++d        l e++++ +    +qa  +  i+  d w l +++    da    +  p++   ++ +  ++ sG     +  +val+r ll +Pd+l+l    +  d  s   l++ +++y
  MMETSP1137-20121227|1237_1 457 CMKMLLGVITPQRGVAETMPGLRVGFVSQTPELLMKGNVLENLLYGVVPSSFVVDGV------LVEPEDEGE---GQQAAEELLINDYDLWYLCKRVVGISDAtvskIYKPKSgwaQSPIdpTSASGifplDDLAKVALVRTLLRAPDVLMLYRVGDLWDWHSQRQLHNLIRSY 621
                 47999***************************************9998876665543......333333322...222333334444444444444433333211112223221112223112333322223567777777777777777777766666666666666666665 PP

>> TIGR03058  rpt_csmH: chlorosome envelope protein H
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   2.9   0.00039      0.79       1      12 [.     381     392 ..     381     393 .. 0.96

  Alignments for each domain:
  == domain 1    score: 7.5 bits;  conditional E-value: 0.00039
   TIGR03058   1 epVqgvIstVSS 12 
                 e+V +vIs+VSS
  MMETSP1137-20121227|1237_1 381 EQVRSVISSVSS 392
                 8**********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (784 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       175  (0.0426621); expected 82.0 (0.02)
Passed bias filter:                      107  (0.0260848); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.55u 0.15s 00:00:00.70 Elapsed: 00:00:00.52
# Mc/sec: 1989.99
//
Query:       MMETSP1137-20121227|1238_1  [L=98]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (98 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        57  (0.0138957); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.15s 00:00:00.29 Elapsed: 00:00:00.28
# Mc/sec: 461.96
//
Query:       MMETSP1137-20121227|1239_1  [L=455]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.2e-05   21.3   0.0    3.2e-05   20.8   0.0    1.1  1  TIGR00479 rumA: 23S rRNA (uracil-5-)-methyltransferase RumA
     0.0027   15.2   0.0      0.005   14.4   0.0    1.3  1  TIGR00537 hemK_rel_arch: putative methylase
     0.0041   14.4   0.0     0.0074   13.5   0.0    1.4  1  TIGR00308 TRM1: N2,N2-dimethylguanosine tRNA methyltransferase
     0.0044   14.3   0.0     0.0081   13.5   0.0    1.3  1  TIGR03534 RF_mod_PrmC: protein-(glutamine-N5) methyltransferase, release factor-specific
     0.0072   13.2   0.0      0.012   12.5   0.0    1.2  1  TIGR00536 hemK_fam: methyltransferase, HemK family
  ------ inclusion threshold ------
      0.012   12.8   0.0      0.018   12.1   0.0    1.2  1  TIGR01177 TIGR01177: TIGR01177 family protein
      0.038   11.3   0.0      0.074   10.3   0.0    1.4  1  TIGR00406 prmA: ribosomal protein L11 methyltransferase
      0.038   12.1   0.0       0.13   10.4   0.0    1.8  2  TIGR02469 CbiT: precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit


Domain annotation for each model (and alignments):
>> TIGR00479  rumA: 23S rRNA (uracil-5-)-methyltransferase RumA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   0.0   6.2e-08   3.2e-05     218     339 ..     130     248 ..     107     264 .. 0.78

  Alignments for each domain:
  == domain 1    score: 20.8 bits;  conditional E-value: 6.2e-08
   TIGR00479 218 lqedlpevksivqninpekt.nvifGeeteviaGeevi..yellgdvklelsardFfqvnseqteklvdralealelqgeekvvDaycGvGtftlplAkqaksvvgvevvkesvekakrnAelng 339
                 l +++p +++iv  +++  +  ++f   +eviaGe  +  + + ++  ++l+ r+ +  ns + ++   r+ ++  l +++ v D+++G+G f++pl  +   v++ + +++s +  + n + n+
  MMETSP1137-20121227|1239_1 130 LDKNFPRIRTIVNKLETISNeXRVFP--MEVIAGEDNLltQVKENGATFKLDYREVY-WNSRLEKE-HRRVIQM--LRKNDVVCDMFAGIGPFAVPLGVKGCGVYANDLNPHSAKWLRENVQANK 248
                 5789***********98765157886..789999875411456689*********98.47766554.3444444..689999************************9999999888888877775 PP

>> TIGR00537  hemK_rel_arch: putative methylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.0   9.8e-06     0.005      18      72 ..     201     255 ..     194     266 .. 0.86

  Alignments for each domain:
  == domain 1    score: 14.4 bits;  conditional E-value: 9.8e-06
   TIGR00537  18 lknddvleiGaGtGlvairlkekgkkivatdinPfavkllkenaklnnveldvle 72 
                 +knd v ++ aG G  a+ l  kg  + a d+nP+++k l+en + n+   +v  
  MMETSP1137-20121227|1239_1 201 RKNDVVCDMFAGIGPFAVPLGVKGCGVYANDLNPHSAKWLRENVQANKASDRVQV 255
                 5778899************************************999987655544 PP

>> TIGR00308  TRM1: N2,N2-dimethylguanosine tRNA methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   0.0   1.5e-05    0.0074      72     110 ..     227     266 ..     198     270 .. 0.88

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 1.5e-05
   TIGR00308  72 vianDinPkavesiknnvklnsven.ievineDaaavlrk 110
                 v anD+nP++ + +++nv+ n+ ++ ++v+n+Da  ++r+
  MMETSP1137-20121227|1239_1 227 VYANDLNPHSAKWLRENVQANKASDrVQVSNLDARDFVRQ 266
                 889******************998636899*****99987 PP

>> TIGR03534  RF_mod_PrmC: protein-(glutamine-N5) methyltransferase, release factor-specific
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   0.0   1.6e-05    0.0081      80     147 ..     196     260 ..     191     269 .. 0.86

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 1.6e-05
   TIGR03534  80 aleelkkkeklkvlDlgtGsGaIalalakelpdakviavDiseeAlkvarkNakrlglke.veflksdl 147
                 +++ l+k++   v+D+ +G G  a+ l   ++ + v+a D++++++k+ r+N++++++++ v++ + d 
  MMETSP1137-20121227|1239_1 196 VIQMLRKND--VVCDMFAGIGPFAVPLG--VKGCGVYANDLNPHSAKWLRENVQANKASDrVQVSNLDA 260
                 667778888..999*******9988886..56**************************99988877665 PP

>> TIGR00536  hemK_fam: methyltransferase, HemK family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.5   0.0   2.3e-05     0.012     108     169 ..     195     255 ..     187     261 .. 0.82

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 2.3e-05
   TIGR00536 108 slisqepl.khilDlgtGsGcIalalAleipnaeviavDistdalavaeeNaeklkleervel 169
                 ++i+   + + ++D++ G G  a+ l   ++ + v+a D+ ++  +  +eN++ +k+++rv++
  MMETSP1137-20121227|1239_1 195 RVIQMLRKnDVVCDMFAGIGPFAVPLG--VKGCGVYANDLNPHSAKWLRENVQANKASDRVQV 255
                 444433332789*********999886..6789****************************97 PP

>> TIGR01177  TIGR01177: TIGR01177 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   3.6e-05     0.018     180     242 ..     200     263 ..     196     268 .. 0.95

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 3.6e-05
   TIGR01177 180 vkegdrvlDPfcGTGgilIEAgLlGikviglDidekmveGariNLehYgied.fkvkrldakkl 242
                 ++++d v D f G G +++  g  G  v+++D++ + ++  r+N +  + +d  +v++lda++ 
  MMETSP1137-20121227|1239_1 200 LRKNDVVCDMFAGIGPFAVPLGVKGCGVYANDLNPHSAKWLRENVQANKASDrVQVSNLDARDF 263
                 6899************************************************99*******985 PP

>> TIGR00406  prmA: ribosomal protein L11 methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   0.00015     0.074     157     216 ..     200     258 ..     195     266 .. 0.88

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 0.00015
   TIGR00406 157 dlkdkkviDvGcGSGiLsiaalklgaakvvavDiDplavesarkNlelNqvsdllqvkle 216
                  +k+++v D+ +G G  ++ +   g   v+a D++p + +  r+N++ N+ sd++qv + 
  MMETSP1137-20121227|1239_1 200 LRKNDVVCDMFAGIGPFAVPLGVKGC-GVYANDLNPHSAKWLRENVQANKASDRVQVSNL 258
                 56889999*****9999999988886.69***************************9875 PP

>> TIGR02469  CbiT: precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   0.00025      0.13      17      74 ..     200     256 ..     195     272 .. 0.82
   2 ?   -3.3   0.0       4.4   2.2e+03      57     112 ..     317     373 ..     305     383 .. 0.58

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 0.00025
   TIGR02469  17 lkkgdvllDiGaGtGsvtieaarlvpkgrvyaierneealelieeNlrrfgvsn.ieiv 74 
                 l+k+dv+ D  aG G  ++ +   v+ + vya + n+++++ ++eN++++++s+ +++ 
  MMETSP1137-20121227|1239_1 200 LRKNDVVCDMFAGIGPFAVPLG--VKGCGVYANDLNPHSAKWLRENVQANKASDrVQVS 256
                 78899**********9999875..78899*********************665504444 PP

  == domain 2    score: -3.3 bits;  conditional E-value: 4.4
   TIGR02469  57 elieeNlrrfgvsnieivegdap.kaeedsleeadavfvgGsgkklkeileaverrl 112
                 + + +Nl + +++  +++ g +  ++   +l+ +   + + s++ ++++++++e+++
  MMETSP1137-20121227|1239_1 317 NHVLMNLPASALEFLDVFVGAFRrDVWTTELPRVHCYCFSKSETPERDVIQRAEEVM 373
                 555555555555555555554444333333555555566666666666666666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (455 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        99  (0.0241346); expected 82.0 (0.02)
Passed bias filter:                       99  (0.0241346); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         8  (0.00195027); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.36u 0.16s 00:00:00.52 Elapsed: 00:00:00.40
# Mc/sec: 1501.38
//
Query:       MMETSP1137-20121227|1240_1  [L=1289]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.2e-10   36.8   0.0    7.2e-10   35.6   0.0    1.5  2  TIGR01418 PEP_synth: phosphoenolpyruvate synthase


Domain annotation for each model (and alignments):
>> TIGR01418  PEP_synth: phosphoenolpyruvate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.6   0.0   1.7e-13   7.2e-10      31     225 ..     565     758 ..     551     763 .. 0.83
   2 ?   -4.1   0.0      0.18   7.6e+02     306     334 ..     904     937 ..     863     951 .. 0.72

  Alignments for each domain:
  == domain 1    score: 35.6 bits;  conditional E-value: 1.7e-13
   TIGR01418  31 seagvkvPegfvvtaeayrefleeagieekirelleeldvedveelekaskeireliletelpeeleeaileaYeklsekeevdvavrssataeDlpdasfaGqqetyL..n.....vkgeeevlekvkkvfasLftdraisYreskgfdhekvalavvvqkmvrsdl......assGvmftid...tetGekdavliesayGLGeavvsG 225
                  +++++vP  f++ +  y +f+ee+++   +  +l+   ++         +e+ +l+ e++lp+++ ++++ + +++++     +avrss+  eD     faG   t +  n      ++ +e+  +vk+v+as +++ a+ Y e +g + e+ ++av  q +v +++      + +Gv  +id   ++  e ++   + a GLG avv+G
  MMETSP1137-20121227|1240_1 565 PDLQISVPRCFILATGVYDRFMEENNL---LVPALN---AK-------DDEEVLSLFSEAKLPADVMDQLHTYLASMTKP----LAVRSSSLFEDAFLRPFAGVYATTMlpNsspsiATRVKELAAAVKRVYASTHKKDALAYAEMTGNRAEEEKMAVILQEIVGTEQdgyyypTLAGVANSIDfypPSNAEPQHGCAQIALGLGSAVVDG 758
                 4689********************998...444454...44.......3467899***************9999999887....8******************9876543533333235789999****************************************9973333334699999998665667777888999999999999998 PP

  == domain 2    score: -4.1 bits;  conditional E-value: 0.18
   TIGR01418 306 rPmDieWakd.....geeeeifivqarPetvqsr 334
                  P ++e+a +       ++e++i+q rP+     
  MMETSP1137-20121227|1240_1 904 CPVELEFALKlrktpDAKHELHILQVRPQSEVTA 937
                 57777777766665667889********865443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1289 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       115  (0.0280351); expected 82.0 (0.02)
Passed bias filter:                      103  (0.0251097); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.80u 0.17s 00:00:00.97 Elapsed: 00:00:00.47
# Mc/sec: 3619.87
//
Query:       MMETSP1137-20121227|1241_1  [L=170]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (170 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        47  (0.0114578); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.16s 00:00:00.32 Elapsed: 00:00:00.30
# Mc/sec: 747.94
//
Query:       MMETSP1137-20121227|1242_1  [L=391]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.2e-08   30.3   0.0    4.5e-08   29.8   0.0    1.1  1  TIGR01389 recQ: ATP-dependent DNA helicase RecQ
    3.3e-08   30.6   0.0    3.6e-06   23.8   0.0    2.1  2  TIGR00614 recQ_fam: ATP-dependent DNA helicase, RecQ family
    0.00023   17.4   0.5     0.0073   12.4   0.0    2.2  2  TIGR03817 DECH_helic: helicase/secretion neighborhood putative DEAH-box helicase


Domain annotation for each model (and alignments):
>> TIGR01389  recQ: ATP-dependent DNA helicase RecQ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.8   0.0   3.3e-11   4.5e-08     227     343 ..     256     374 ..     239     381 .. 0.85

  Alignments for each domain:
  == domain 1    score: 29.8 bits;  conditional E-value: 3.3e-11
   TIGR01389 227 GiiYassRkkveelaeaLeskgiealaYha.GlskkvRaeaqekFleddvkvvvatvaFGmGidksdvRfvihldlPknlesyyqeaGRaGRDGlkaeai.llyseaDlallkrliees 343
                  ++ a+sR+  e  a +L+++g++a+   +  l+ k+R+ a++ Fl+  v v+v t      ++ + v +vi +d P+ + +y     R GR G+  +   ++ ++aD ++l++l +  
  MMETSP1137-20121227|1242_1 256 VLVVANSRRSCEAAAFFLREEGVPAGVISGeRLKXKERDAALQPFLNGSVPVLVVTEGALKPLELPAVGHVISYDFPETMQEYASRLSRTGRSGRSGKMTtIVSDTADKNVLRQLAQVL 374
                 5789*********************8876526*************************999***********************999888888888877651455678888888776655 PP

>> TIGR00614  recQ_fam: ATP-dependent DNA helicase, RecQ family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.6   0.0    0.0017       2.4      13      47 ..      20      54 ..      12      60 .. 0.89
   2 !   23.8   0.0   2.7e-09   3.6e-06     226     342 ..     254     371 ..     235     381 .. 0.84

  Alignments for each domain:
  == domain 1    score: 4.6 bits;  conditional E-value: 0.0017
   TIGR00614 13 rpvqlevinavlegrdalvvmatGgGksLCyqlpa 47
                 p q  +i + l+grd++vv a   G+  C  lp 
  MMETSP1137-20121227|1242_1 20 TPLQRSAIPVSLAGRDSVVVAAVEAGQPACLLLPL 54
                58899*************************98875 PP

  == domain 2    score: 23.8 bits;  conditional E-value: 2.7e-09
   TIGR00614 226 gksGiiYClsrkkveqvaaeLqkkglaaaaYha.gleesarkevqkkflrdeiqvvvatvafGmGinkpdvRfvihyslpksiesYYqesGRaGRDglksec.vlfyapaDvallrrll 342
                  +  ++  +sr+++e  a  L+++g+ a+      l+ ++r+   + fl+  + v+v t      ++ p v +vi y+ p  + +Y     R GR g   +  ++  ++aD ++lr+l 
  MMETSP1137-20121227|1242_1 254 TPV-LVVANSRRSCEAAAFFLREEGVPAGVISGeRLKXKERDAALQPFLNGSVPVLVVTEGALKPLELPAVGHVISYDFPETMQEYASRLSRTGRSGRSGKMtTIVSDTADKNVLRQLA 371
                 444.7889********************99875269***********************99999**********************999888888888776415677899999999875 PP

>> TIGR03817  DECH_helic: helicase/secretion neighborhood putative DEAH-box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.4   0.0   5.3e-06    0.0073      23     138 ..       5     141 ..       1     170 [. 0.80
   2 !    3.4   0.1    0.0029       3.9     248     380 ..     228     358 ..     178     378 .. 0.69

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 5.3e-06
   TIGR03817  23 pdvvaaleaaGieapwqhqaraaelahaGehvvvatgtasGkslayllPvlsalaed.....p...............ratalylaPtk.alaadqlravkeleerdvraatydGdtpaeerewirekaryvltnPd 138
                  ++++a+++aG+  p   q +a  ++ aG++ vv ++  +G+  + llP+++ l ++     +                 t+l laPt+ al++    a   l+++ +r a+  G  p ee       a+++l+ P 
  MMETSP1137-20121227|1242_1   5 SELRSAMAQAGLCDPTPLQRSAIPVSLAGRDSVVVAAVEAGQPACLLLPLINPLLSAetmsgKgghsfskasanakvcAPTSLLLAPTRlALSRIATLAKALLHNSPIRMAVACGGVPIEETMKTMTGATLLLATPS 141
                 68999***********************************************99998555550555566666666665778999***98455555555555567789999999999999999999999999999885 PP

  == domain 2    score: 3.4 bits;  conditional E-value: 0.0029
   TIGR03817 248 ngapvrrsasaeaadlladlvaegvrt..ltfvrsrrgaevvaleakerlaevdaelaervaayraGylaedrreleralkdGellgvaatnalelGvdisGldavviaGfPGtv...aslwqqaGraGrrgqdalvv 380
                  g p r   + + a   a l+a+  +t  l+  +srr+ e+ a   +e+   ++   +er+          +r +  + + +G++  ++ t+     +++  +  v+   fP t+   as   ++Gr+Gr+g+ + +v
  MMETSP1137-20121227|1242_1 228 AGVPARPCLTVDEAVDAASLIAATPKTpvLVVANSRRSCEAAAFFLREEGVPAGVISGERLK-------XKERDAALQPFLNGSVPVLVVTEGALKPLELPAVGHVISYDFPETMqeyASRLSRTGRSGRSGKMTTIV 358
                 56777777777777777788887777733444578888888887777665543333333332.......345555556666788887777776666788888889999999999733355566666666666654443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (391 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        96  (0.0234032); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.37u 0.13s 00:00:00.50 Elapsed: 00:00:00.40
# Mc/sec: 1290.19
//
Query:       MMETSP1137-20121227|1243_1  [L=251]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (251 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        64  (0.0156021); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.16s 00:00:00.39 Elapsed: 00:00:00.62
# Mc/sec: 534.34
//
Query:       MMETSP1137-20121227|1244_1  [L=231]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (231 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        72  (0.0175524); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.12s 00:00:00.32 Elapsed: 00:00:00.34
# Mc/sec: 896.75
//
Query:       MMETSP1137-20121227|1245_1  [L=266]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (266 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       279  (0.0680156); expected 82.0 (0.02)
Passed bias filter:                      164  (0.0399805); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.16s 00:00:00.42 Elapsed: 00:00:00.36
# Mc/sec: 975.25
//
Query:       MMETSP1137-20121227|1246_1  [L=80]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (80 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        45  (0.0109703); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.15s 00:00:00.29 Elapsed: 00:00:00.56
# Mc/sec: 185.25
//
Query:       MMETSP1137-20121227|1247_1  [L=342]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (342 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       102  (0.0248659); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.16s 00:00:00.41 Elapsed: 00:00:00.44
# Mc/sec: 1025.92
//
Query:       MMETSP1137-20121227|1249_1  [L=299]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (299 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        56  (0.0136519); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.13s 00:00:00.36 Elapsed: 00:00:00.36
# Mc/sec: 1096.24
//
Query:       MMETSP1137-20121227|1250_1  [L=321]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.1e-19   67.3   0.0    3.2e-18   63.4   0.0    2.1  1  TIGR00674 dapA: dihydrodipicolinate synthase
    1.4e-08   31.7   0.0    7.5e-08   29.3   0.0    1.9  1  TIGR02313 HpaI-NOT-DapA: 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase
    4.8e-07   27.0   0.0    1.2e-05   22.3   0.0    2.2  2  TIGR03249 KdgD: 5-dehydro-4-deoxyglucarate dehydratase
      1e-05   22.8   0.0    2.3e-05   21.7   0.0    1.5  2  TIGR00683 nanA: N-acetylneuraminate lyase


Domain annotation for each model (and alignments):
>> TIGR00674  dapA: dihydrodipicolinate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.4   0.0   3.1e-21   3.2e-18       3     283 ..      11     311 ..       9     314 .. 0.81

  Alignments for each domain:
  == domain 1    score: 63.4 bits;  conditional E-value: 3.1e-21
   TIGR00674   3 ltAliTPfkedgsvdfaalekliesqiekgvdaivvvGtTGEsatLsleEkkkvievavelvknrvpviaGtgsnateeaieltkeaeklgv..dgvlvvtPyYnkP.....tqeGlykhfkaiaee....vel...........PiilYnvPsRtgvslepetvkrLaeeve..ivaiKeasgdlervseikaeakedfkvlsGdDaltleilalGakGviSVasnvapkelkemvkaalegdteeareihqkllklfkalfietNPipvKta.lallgliekdelRlPLtelseekkeklkevl 283
                  +Al TPf+ed+ vd+  le++     e+gv++++++GtTGE a +++ E++ v+e +         ++a +++ ++++a++l++ a  + +  d++l+  P+Y  P     ++ G+ ++f +  +      e            P+ l      t + ++ e+  rL +e +  i ++K ++  le+++++   a+   +vl G+  ++l++l+ G + v+S  +  +   l+++++ + +++  +a+ ++q   + +   + e      K+a +++l + +k e R+PL++l e +   +++++
  MMETSP1137-20121227|1250_1  11 TVALPTPFDEDQ-VDVPGLERMAGWVKEQGVNSVIAAGTTGEFAGMTFAERVLVLEATRRGLGVDGFLFANVSACCVDDAVQLARDAVRSNArpDALLLLPPFYHAPfspaiNAAGVEAFFRKFFNRlprrFEAdcapgaerrvpPVFLXTFAWHTQQPISAEVYGRLCAEFPdrIAGVKASGMGLEQAQQFSLAAP-GRAVLVGNGRINLDVLKAGLH-VVSGDGVPVCWALSKLLRLVEANELGRAAAVQQAXWRGCVDKYDEIA--ADKAAfAKILRVSTKFETRPPLVPLAEAEAVDIQQAV 311
                 68999******9.*********************************************99998889******************99877665449**********9966555578998888776543111111122222333344999********************9887668*****************99998.779**************9987.88988888888999999999999999999999887777776665533..2233313455566666778888888887777776665 PP

>> TIGR02313  HpaI-NOT-DapA: 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.3   0.0   7.4e-11   7.5e-08       7     187 ..      13     215 ..       9     260 .. 0.80

  Alignments for each domain:
  == domain 1    score: 29.3 bits;  conditional E-value: 7.4e-11
   TIGR02313   7 plitpfkvngdldekklrelvervvengshavsvtgtsgepssltleerkrvievvldtvagrvpvipgtgalrleetleltkkakeaga..daamvivpyyvkp.....nq...ealydyf.kev.....adavpdi.....plliynipgraaveievktvarlvkdfpn.ivglkesskdleylsrlllea.grdfllfsg 187
                  l+tpf    ++d   l+++   v e+g  +v  +gt+ge + +t  er+ v+e++   +     +     a   +++++l++ a    a  da +++ p+y  p     n    ea+++ f + +     ad+ p       p+++      + + i++   +rl  +fp+ i g+k s   le  ++  l a gr  l+  g
  MMETSP1137-20121227|1250_1  13 ALPTPFDE-DQVDVPGLERMAGWVKEQGVNSVIAAGTTGEFAGMTFAERVLVLEATRRGLGVDGFLFANVSACCVDDAVQLARDAVRSNArpDALLLLPPFYHAPfspaiNAagvEAFFRKFfNRLprrfeADCAPGAerrvpPVFLXTFAWHTQQPISAEVYGRLCAEFPDrIAGVKASGMGLEQAQQFSLAApGRAVLVGNG 215
                 589***99.9*********************************************999887777778899999***********9876663377888889**99844444332226666544233332333555553233334799999999*******************6599************99988765999998776 PP

>> TIGR03249  KdgD: 5-dehydro-4-deoxyglucarate dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.3   0.0   1.2e-08   1.2e-05      18     113 ..      16     113 ..       5     128 .. 0.87
   2 ?    2.3   0.0     0.016        16     274     297 ..     290     313 ..     277     315 .. 0.81

  Alignments for each domain:
  == domain 1    score: 22.3 bits;  conditional E-value: 1.2e-08
   TIGR03249  18 tpfdadgsldeaalrenieflldedlealfvagGtGeffsltkaeveqvvevaveaakgkvPvlagvGg.nlsvaieiaraaekkGa..dGllllPpyl 113
                 tpfd+d ++d   l++   ++ +++++++ +ag tGef  +t ae   v+e++ +       ++a v    + +a+++ar a +  a  d llllPp+ 
  MMETSP1137-20121227|1250_1  16 TPFDED-QVDVPGLERMAGWVKEQGVNSVIAAGTTGEFAGMTFAERVLVLEATRRGLGVDGFLFANVSAcCVDDAVQLARDAVRSNArpDALLLLPPFY 113
                 677766.58889999999*********************************99888888888889886526899********998875589*****985 PP

  == domain 2    score: 2.3 bits;  conditional E-value: 0.016
   TIGR03249 274 gpvraPlvdlekeelaeleellkk 297
                  + r+Plv+l ++e+ ++++ ++k
  MMETSP1137-20121227|1250_1 290 FETRPPLVPLAEAEAVDIQQAVEK 313
                 468**************9999987 PP

>> TIGR00683  nanA: N-acetylneuraminate lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.7   0.0   2.3e-08   2.3e-05       4     109 ..      10     117 ..       8     124 .. 0.91
   2 ?   -3.1   0.0      0.79   8.1e+02     158     232 ..     186     259 ..     180     265 .. 0.64

  Alignments for each domain:
  == domain 1    score: 21.7 bits;  conditional E-value: 2.3e-08
   TIGR00683   4 vlaallvsfdedqaldkkslrrlvrfnidkgvdGlyvGGstGeafvlsleekkevleivkeeakdkikliaqvGsvslkeavelaksakelGy..dalsavtpfyy.kf 109
                 +  al ++fdedq +d  +l r+  +  ++gv+ +   G+tGe   ++  e+  vle ++        l a+v +  + +av+la+ a +     dal  + pfy+ +f
  MMETSP1137-20121227|1250_1  10 ITVALPTPFDEDQ-VDVPGLERMAGWVKEQGVNSVIAAGTTGEFAGMTFAERVLVLEATRRGLGVDGFLFANVSACCVDDAVQLARDAVRSNArpDALLLLPPFYHaPF 117
                 567999*****98.7****************************999***************999999********************988653339**999**997345 PP

  == domain 2    score: -3.1 bits;  conditional E-value: 0.79
   TIGR00683 158 lalkftaGdlyllerlkkeypdlllyaGydeillsalllGvdGaiGstynvnGvrarqivkllkeGdlaealklq 232
                  ++k +   l + +++  + p   +  G   i l  l +G     G    v  +   ++++l+ + +l  a  +q
  MMETSP1137-20121227|1250_1 186 AGVKASGMGLEQAQQFSLAAPGRAVLVGNGRINLDVLKAGLHVVSGDGVPV-CWALSKLLRLVEANELGRAAAVQ 259
                 566666666666666666777777777777777777777766666666555.36666666666666666666666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (321 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       106  (0.0258411); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.31u 0.17s 00:00:00.48 Elapsed: 00:00:00.63
# Mc/sec: 672.52
//
Query:       MMETSP1137-20121227|1251_1  [L=788]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        1.4    4.2  24.4        2.2    3.6  16.9    1.2  1  TIGR00927 2A1904: K+-dependent Na+/Ca+ exchanger


Domain annotation for each model (and alignments):
>> TIGR00927  2A1904: K+-dependent Na+/Ca+ exchanger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6  16.9   0.00053       2.2     744     995 ..     268     472 ..     235     490 .. 0.36

  Alignments for each domain:
  == domain 1    score: 3.6 bits;  conditional E-value: 0.00053
   TIGR00927 744 sqgdvaeaeakgertgeeaeae.teaegekdeesggeaeqegeseekaeeeseGeieaerkgedegegeieakeaevkGeeeeeeveaeeeteaeGdedegeieaeeeGeekededegeieakeevevegdedeteieaeeeaevkededeGeieaeedgevkGdegeeqkveaeeeeeedekdegeedeeeiaddeevkdetgeqelnaenqgeakedekGvdgeggsdG.Gdseeeeeeeee.eeeeeeeeee 995
                 sq+d+ +   +  +    +e++ + ++g +   + +e +  ++s + + ++s+ + +  r++++++e + ++++                                            +++++ ++++ +d  +   + ++     +++  G ++a+  + ++ d ++   +++  + ++d +++ + ++ + ++  ++ ++  + el a+ q e+k   +G+  + g+ G G s ++   +++ ++++e e+e 
  MMETSP1137-20121227|1251_1 268 SQDDGHKCVYTDSHACAHGESAkASGNGSQAASRRDEHDGADDSRKAGVADSQNDSQHHRQQQKDSERDSQKESV-------------------------------------------DARGSGDSDKLADMPNDT-HWDT-PTHAHSHTHGHTHAHTPTRTHDDADDD--AHN--DMNNDANNDAN-SDVHAHARMGAAKGAPDGELYAQLQHESKRACNGAATDSGAKGcGSSTDKATSDDDiDNDNESEKEW 472
                 222222222211111111111101233333333333333333333444444444444444444444444444444...........................................444444444444431111.1111.122223344555554333333333311..111..11111111111.1122223334444455556666666666666666555555554233334433333322333322222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (788 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       204  (0.0497318); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.26s 00:00:00.70 Elapsed: 00:00:00.53
# Mc/sec: 1962.40
//
Query:       MMETSP1137-20121227|1252_1  [L=156]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0033   13.6   0.1       0.14    8.2   0.0    2.0  2  TIGR00644 recJ: single-stranded-DNA-specific exonuclease RecJ


Domain annotation for each model (and alignments):
>> TIGR00644  recJ: single-stranded-DNA-specific exonuclease RecJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.2   0.0   3.4e-05      0.14      61      95 ..      20      55 ..       6      73 .. 0.79
   2 !    3.6   0.0   0.00084       3.4      58      85 ..      95     121 ..      87     126 .. 0.84

  Alignments for each domain:
  == domain 1    score: 8.2 bits;  conditional E-value: 3.4e-05
   TIGR00644 61 gDyDvDGitstailveaLkelg.lkvsikipnriee 95
                 D D DG++s+a l++++ +lg + +++++ + i e
  MMETSP1137-20121227|1252_1 20 FDQDNDGVISAAELKKMMAKLGnSLTDAEVKDIISE 55
                39********************66677888877776 PP

  == domain 2    score: 3.6 bits;  conditional E-value: 0.00084
   TIGR00644  58 lifgDyDvDGitstailveaLkelglkv 85 
                 +if D+D DG +s   ++ aL ++g+++
  MMETSP1137-20121227|1252_1  95 AIF-DKDGDGFISPKEMIAALTNFGITL 121
                 444.*********************876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (156 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       187  (0.0455875); expected 82.0 (0.02)
Passed bias filter:                      153  (0.0372989); expected 82.0 (0.02)
Passed Vit filter:                        18  (0.0043881); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.13u 0.22s 00:00:00.35 Elapsed: 00:00:00.32
# Mc/sec: 643.45
//
Query:       MMETSP1137-20121227|1253_1  [L=269]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (269 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        49  (0.0119454); expected 82.0 (0.02)
Passed bias filter:                       42  (0.0102389); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.11s 00:00:00.33 Elapsed: 00:00:00.33
# Mc/sec: 1075.91
//
Query:       MMETSP1137-20121227|1254_1  [L=76]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (76 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        45  (0.0109703); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.12s 00:00:00.25 Elapsed: 00:00:00.26
# Mc/sec: 385.81
//
Query:       MMETSP1137-20121227|1255_1  [L=168]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (168 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        41  (0.00999512); expected 82.0 (0.02)
Passed bias filter:                       39  (0.00950756); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.18s 00:00:00.35 Elapsed: 00:00:00.28
# Mc/sec: 764.63
//
Query:       MMETSP1137-20121227|1256_1  [L=205]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (205 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        68  (0.0165773); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.12s 00:00:00.30 Elapsed: 00:00:00.30
# Mc/sec: 901.93
//
Query:       MMETSP1137-20121227|1257_1  [L=666]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.5e-25   85.8   0.0    1.9e-15   54.8   0.0    2.1  2  TIGR03596 GTPase_YlqF: ribosome biogenesis GTP-binding protein YlqF
    6.4e-13   46.6   0.0    5.7e-11   40.3   0.0    2.2  2  TIGR03598 GTPase_YsxC: ribosome biogenesis GTP-binding protein YsxC
    4.5e-11   40.2   0.0      1e-06   25.9   0.0    2.2  2  TIGR03594 GTPase_EngA: ribosome-associated GTPase EngA
    6.7e-09   33.0   0.2    9.2e-05   19.4   0.1    2.3  2  TIGR02729 Obg_CgtA: Obg family GTPase CgtA
      8e-08   29.6   0.1    7.1e-05   19.9   0.1    2.1  2  TIGR00450 mnmE_trmE_thdF: tRNA modification GTPase TrmE
    1.6e-06   25.0   0.0    0.00021   18.1   0.0    2.1  2  TIGR03918 GTP_HydF: [FeFe] hydrogenase H-cluster maturation GTPase HydF
    4.3e-06   23.9   0.0    0.00069   16.7   0.0    2.1  2  TIGR03597 GTPase_YqeH: ribosome biogenesis GTPase YqeH
    6.6e-06   23.1   0.0     0.0017   15.1   0.0    2.2  2  TIGR03156 GTP_HflX: GTP-binding protein HflX
    1.5e-05   22.4   0.0    2.2e-05   21.8   0.0    1.2  1  TIGR00436 era: GTP-binding protein Era
    9.3e-05   20.1   0.0     0.0003   18.5   0.0    1.7  2  TIGR00231 small_GTP: small GTP-binding protein domain
  ------ inclusion threshold ------
      0.022   11.6   0.0      0.034   11.0   0.0    1.2  1  TIGR00991 3a0901s02IAP34: GTP-binding protein
      0.024   12.0   0.0      0.053   10.9   0.0    1.5  2  TIGR00157 TIGR00157: ribosome small subunit-dependent GTPase A
      0.056    9.9   0.1       0.15    8.6   0.0    1.6  2  TIGR00437 feoB: ferrous iron transport protein B


Domain annotation for each model (and alignments):
>> TIGR03596  GTPase_YlqF: ribosome biogenesis GTP-binding protein YlqF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.8   0.0     5e-10   1.6e-07      17      90 ..     165     242 ..     159     262 .. 0.83
   2 !   54.8   0.0   5.9e-18   1.9e-15     123     270 ..     367     524 ..     357     528 .. 0.84

  Alignments for each domain:
  == domain 1    score: 28.8 bits;  conditional E-value: 5e-10
   TIGR03596  17 eklklvDvvievlDARiplssknpeleelvk....nkprlivlnkaDladpektkkwlkyfeekgkkalavnakkkkk 90 
                   +++  ++++++DAR pl  +  +le++++     +p+++++nkaDl ++++  +w kyf+ +++++++ +a k ++
  MMETSP1137-20121227|1257_1 165 RVMERSQLLVQIVDARNPLLFRCVDLEKYASelrpPRPCMLIVNKADLLSEAQRVAWAKYFSANKIEFVFWSAAKAQH 242
                 566777899*************99999877644447**************************8888888777766543 PP

  == domain 2    score: 54.8 bits;  conditional E-value: 5.9e-18
   TIGR03596 123 vvGiPNvGKStliNrlakkkvakvgnkpgvTksqqwiklsk..eleLlDtPGilwpkledeevgl...kLaltgaikdeildkeevalfl.lellkekypeelkerykleeeee...eeeelleeiakkrglllkg.geldleraaeillkelrkgkl 270
                  vG PNvGKS+ +N +++ k+++v ++pg Tk+ q++++ +  ++ L+D PG+++p +  +++ +    +  +++++d i + + +   l ++ + ++y  +l++  + ++++e    + ell++ a +rg++++  g  d +r a+i+lk+l ++kl
  MMETSP1137-20121227|1257_1 367 LVGYPNVGKSSTVNVMVSAKKTSVSATPGKTKHFQTLRVPDepGILLCDCPGLVFPSVAGSKAQMicdGILPIDQMRDYITPIRLLCSRLtADAFLQAYGLRLRTAEERADDPEapePARELLMAHAISRGFMTATkGGPDESRSARIILKDLVNAKL 524
                 69************************************976447*************9766555422268899**********99988752789999999998876666666555558999**********987652789*************99887 PP

>> TIGR03598  GTPase_YsxC: ribosome biogenesis GTP-binding protein YsxC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.0     0.024       7.5     102     152 ..     171     223 ..     155     250 .. 0.71
   2 !   40.3   0.0   1.8e-13   5.7e-11      18      84 ..     362     429 ..     356     449 .. 0.87

  Alignments for each domain:
  == domain 1    score: 4.0 bits;  conditional E-value: 0.024
   TIGR03598 102 kgvvllvDirhelkelDlellellkea..kipvlvvltKaDklkkselkkalk 152
                 + +v++vD+r +l     +l ++++e    +p++++++KaD l+++++ + +k
  MMETSP1137-20121227|1257_1 171 QLLVQIVDARNPLLFRCVDLEKYASELrpPRPCMLIVNKADLLSEAQRVAWAK 223
                 56899******987665555555555422789***********9987655444 PP

  == domain 2    score: 40.3 bits;  conditional E-value: 1.8e-13
   TIGR03598  18 lpeiafaGrSNvGKSsliNaLtnrkklartSktPGrTqlinffev..neelrlvDlPGYGyakvskeek 84 
                 l  i ++G+ NvGKSs +N++++ k  + +S tPG+T++    +v  +  + l D PG  +  v  ++ 
  MMETSP1137-20121227|1257_1 362 LRTIGLVGYPNVGKSSTVNVMVSAK-KTSVSATPGKTKHFQTLRVpdEPGILLCDCPGLVFPSVAGSKA 429
                 56799******************99.578****************544489*******98888776655 PP

>> TIGR03594  GTPase_EngA: ribosome-associated GTPase EngA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.1   0.0   4.8e-05     0.015     253     322 ..     165     236 ..     155     261 .. 0.74
   2 !   25.9   0.0   3.3e-09     1e-06     174     212 ..     361     399 ..     329     420 .. 0.76

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 4.8e-05
   TIGR03594 253 kaieradvvllvlDategiseqDlkiaglile..egkalvivvNKwDlvkdekeleelkkeleeklkflkfa 322
                 +++er+++ + ++Da++++      + ++++e    ++++++vNK Dl++++++ +  k    +k++f+ + 
  MMETSP1137-20121227|1257_1 165 RVMERSQLLVQIVDARNPLLFRCVDLEKYASElrPPRPCMLIVNKADLLSEAQRVAWAKYFSANKIEFVFWS 236
                 689999999999999999876666666666551167999********9955555555555555666666554 PP

  == domain 2    score: 25.9 bits;  conditional E-value: 3.3e-09
   TIGR03594 174 epikiaiiGrpNvGKStLvNallgeervivsdiaGtTrD 212
                 +   i+++G pNvGKS+ vN ++  +++ vs ++G T+ 
  MMETSP1137-20121227|1257_1 361 TLRTIGLVGYPNVGKSSTVNVMVSAKKTSVSATPGKTKH 399
                 34679999******************9999999999985 PP

>> TIGR02729  Obg_CgtA: Obg family GTPase CgtA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.2   0.0   9.6e-05      0.03     231     315 ..     165     241 ..     153     252 .. 0.77
   2 !   19.4   0.1   2.9e-07   9.2e-05     157     217 ..     362     421 ..     360     429 .. 0.82

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 9.6e-05
   TIGR02729 231 kHiertrvllhlidlseedekdpvedleviekeLkkyseeLa.ekpelvvlnkidlleeeeleellkelkeelekkvlaisaltke 315
                 + +er+++l++++d+++         l     +L+ky +eL   +p ++++nk+dll+e++  + +k +++++  ++++ sa++ +
  MMETSP1137-20121227|1257_1 165 RVMERSQLLVQIVDARNP--------LLFRCVDLEKYASELRpPRPCMLIVNKADLLSEAQRVAWAKYFSANK-IEFVFWSAAKAQ 241
                 667888888888888776........34445589*******84599************999999999999885.666666666543 PP

  == domain 2    score: 19.4 bits;  conditional E-value: 2.9e-07
   TIGR02729 157 ladvglvGlpnaGkStllsa.vsaakpkiadYpFtTlvPnLGvveveeeksfvlaDiPglie 217
                 l  +glvG+pn+GkS+ +++ vsa k+ +++ p  T +  +  ++v +e  ++l D Pgl+ 
  MMETSP1137-20121227|1257_1 362 LRTIGLVGYPNVGKSSTVNVmVSAKKTSVSATPGKTKH--FQTLRVPDEPGILLCDCPGLVF 421
                 6679***********99997257778899999999886..55788888899********985 PP

>> TIGR00450  mnmE_trmE_thdF: tRNA modification GTPase TrmE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.5   0.0    0.0013      0.41     286     335 ..     167     219 ..     161     255 .. 0.75
   2 !   19.9   0.1   2.3e-07   7.1e-05     212     245 ..     365     398 ..     358     401 .. 0.93

  Alignments for each domain:
  == domain 1    score: 7.5 bits;  conditional E-value: 0.0013
   TIGR00450 286 ikeadlvlyvlDaskpl...tkddeliitlkkkkkdlllvlNKiDLaeleilk 335
                 +++++l++ ++Da++pl     d e  + + +  ++++l++NK+DL ++ + +
  MMETSP1137-20121227|1257_1 167 MERSQLLVQIVDARNPLlfrCVDLEKYASELRPPRPCMLIVNKADLLSEAQRV 219
                 678899**********833235668888899999************9444333 PP

  == domain 2    score: 19.9 bits;  conditional E-value: 2.3e-07
   TIGR00450 212 laivGktNvGKSSLlNallkkdraiVsdikGttR 245
                 + +vG +NvGKSS +N++++  ++ Vs+ +G t+
  MMETSP1137-20121227|1257_1 365 IGLVGYPNVGKSSTVNVMVSAKKTSVSATPGKTK 398
                 789****************************997 PP

>> TIGR03918  GTP_HydF: [FeFe] hydrogenase H-cluster maturation GTPase HydF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.7   0.0    0.0077       2.4      82     155 ..     165     242 ..     160     272 .. 0.70
   2 !   18.1   0.0   6.7e-07   0.00021       8      43 ..     363     398 ..     357     420 .. 0.83

  Alignments for each domain:
  == domain 1    score: 4.7 bits;  conditional E-value: 0.0077
   TIGR03918  82 evlektdlallvvdaeael..eeleeelleelkekkipvivvlnkidlkeeeke..keklekkkeeevvlvsakekeg 155
                 +v+e+  l + +vda++ l  + ++ e +++  +   p+++++nk+dl +e+++  ++k+ +++++e+v+ sa++ ++
  MMETSP1137-20121227|1257_1 165 RVMERSQLLVQIVDARNPLlfRCVDLEKYASELRPPRPCMLIVNKADLLSEAQRvaWAKYFSANKIEFVFWSAAKAQH 242
                 57888888888888875431144555544444455579**********999988777888889999999999887765 PP

  == domain 2    score: 18.1 bits;  conditional E-value: 6.7e-07
   TIGR03918   8 lhialfGrrNaGKSsliNaltgqdvaivsdvpGtTt 43 
                  +i+l+G  N+GKSs +N ++  + + vs +pG T 
  MMETSP1137-20121227|1257_1 363 RTIGLVGYPNVGKSSTVNVMVSAKKTSVSATPGKTK 398
                 57*******************************995 PP

>> TIGR03597  GTPase_YqeH: ribosome biogenesis GTPase YqeH
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.9   0.0    0.0081       2.6      56     110 ..     161     219 ..     152     236 .. 0.75
   2 !   16.7   0.0   2.2e-06   0.00069     160     217 ..     367     421 ..     360     433 .. 0.80

  Alignments for each domain:
  == domain 1    score: 4.9 bits;  conditional E-value: 0.0081
   TIGR03597  56 nllnslsekkalvvavvD........ifdlegslikelkrfvkenkvllvvNKidllpksvkl 110
                 ++l ++ e+++l+v++vD         +dle    k  +++    +++l+vNK dll +++++
  MMETSP1137-20121227|1257_1 161 RQLWRVMERSQLLVQIVDarnpllfrCVDLE----KYASELRPPRPCMLIVNKADLLSEAQRV 219
                 5666777788888888887777655555665....44445566799***********998765 PP

  == domain 2    score: 16.7 bits;  conditional E-value: 2.2e-06
   TIGR03597 160 vvGvtNVGKSsliNkllklnkgkkkvittSkfpgTTldlieipl..dkesvllDtpGiin 217
                 +vG  NVGKSs +N +++ +k      ++S  pg T ++   ++  + +  l D pG++ 
  MMETSP1137-20121227|1257_1 367 LVGYPNVGKSSTVNVMVSAKK-----TSVSATPGKTKHFQTLRVpdEPGILLCDCPGLVF 421
                 79***************5443.....479999999977666655437789999****975 PP

>> TIGR03156  GTP_HflX: GTP-binding protein HflX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.7   0.0     0.004       1.3     267     338 ..     168     241 ..     157     253 .. 0.73
   2 !   15.1   0.0   5.5e-06    0.0017     189     215 ..     362     388 ..     356     420 .. 0.73

  Alignments for each domain:
  == domain 1    score: 5.7 bits;  conditional E-value: 0.004
   TIGR03156 267 aeadlllhvvDasdeeaeeqieaveevLeelgaeeipvllvlNkidkleeeelee....leekkeeavlvsAkkge 338
                 ++++ll+++vDa ++   +   + e+  +el     p++l++Nk+d+l+e++  +     +++k e v+ sA+k +
  MMETSP1137-20121227|1257_1 168 ERSQLLVQIVDARNPLLFRC-VDLEKYASELRPP-RPCMLIVNKADLLSEAQRVAwakyFSANKIEFVFWSAAKAQ 241
                 67899******999987765.5689999999975.59***********9665443000033444667788877654 PP

  == domain 2    score: 15.1 bits;  conditional E-value: 5.5e-06
   TIGR03156 189 vptvalvGYTNaGKstllnaltkaevl 215
                 + t++lvGY N GKs+++n +++a+  
  MMETSP1137-20121227|1257_1 362 LRTIGLVGYPNVGKSSTVNVMVSAKKT 388
                 6789*****************998543 PP

>> TIGR00436  era: GTP-binding protein Era
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.8   0.0   7.1e-08   2.2e-05       3      59 ..     365     420 ..     363     432 .. 0.93

  Alignments for each domain:
  == domain 1    score: 21.8 bits;  conditional E-value: 7.1e-08
   TIGR00436   3 vailGrpnvGKSTLlNkllgqkisivSpkaqTTrnrisgiltegasqiifiDtPGlh 59 
                 ++++G pnvGKS  +N ++ +k + vS  +  T++  ++  + ++  i++ D PGl 
  MMETSP1137-20121227|1257_1 365 IGLVGYPNVGKSSTVNVMVSAKKTSVSATPGKTKH-FQTLRVPDEPGILLCDCPGLV 420
                 89******************************987.79*****************96 PP

>> TIGR00231  small_GTP: small GTP-binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0       1.7   5.5e+02     114     126 ..     202     214 ..     191     240 .. 0.81
   2 !   18.5   0.0   9.4e-07    0.0003       4      46 ..     363     405 ..     360     432 .. 0.83

  Alignments for each domain:
  == domain 1    score: -1.9 bits;  conditional E-value: 1.7
   TIGR00231 114 piilvvnKiDlkd 126
                 p +l vnK Dl +
  MMETSP1137-20121227|1257_1 202 PCMLIVNKADLLS 214
                 889*******976 PP

  == domain 2    score: 18.5 bits;  conditional E-value: 9.4e-07
   TIGR00231   4 ikivivGhvdvGKstLlnsllknkisiteskpgvtrdyvteqi 46 
                 + i++vG ++vGKs++ n +   k   ++++pg t+++ t  +
  MMETSP1137-20121227|1257_1 363 RTIGLVGYPNVGKSSTVNVMVSAKKTSVSATPGKTKHFQTLRV 405
                 68************************************99754 PP

>> TIGR00991  3a0901s02IAP34: GTP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00011     0.034      40      70 ..     364     394 ..     356     435 .. 0.80

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 0.00011
   TIGR00991  40 tilvmgkggvgksstvnsiigervaavsafq 70 
                 ti ++g   vgksstvn ++  + ++vsa  
  MMETSP1137-20121227|1257_1 364 TIGLVGYPNVGKSSTVNVMVSAKKTSVSATP 394
                 78889999*******************9864 PP

>> TIGR00157  TIGR00157: ribosome small subunit-dependent GTPase A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0       3.5   1.1e+03      73     107 ..     204     237 ..     203     250 .. 0.70
   2 ?   10.9   0.0   0.00017     0.053     127     194 ..     367     430 ..     360     443 .. 0.75

  Alignments for each domain:
  == domain 1    score: -3.3 bits;  conditional E-value: 3.5
   TIGR00157  73 iivlnkkdlleeedaekeqleelknlgYkvllvsv 107
                 ++++nk dll+e ++  ++++ +++   + ++ s+
  MMETSP1137-20121227|1257_1 204 MLIVNKADLLSEAQRV-AWAKYFSANKIEFVFWSA 237
                 5789999999998887.788777776666666555 PP

  == domain 2    score: 10.9 bits;  conditional E-value: 0.00017
   TIGR00157 127 faGqSGVGKSSLiNlldpevkqkvkevseklklGkhTTtsvelfhlqgGliiDtPGfneldlenleee 194
                 ++G   VGKSS +N +++  k +v+    + ++ kh  t  ++ +  g l++D PG+  ++++  +++
  MMETSP1137-20121227|1257_1 367 LVGYPNVGKSSTVNVMVSAKKTSVS---ATPGKTKHFQT-LRVPDEPGILLCDCPGLVFPSVAGSKAQ 430
                 688899***********99887766...66666677543.34556677789*****988887777655 PP

>> TIGR00437  feoB: ferrous iron transport protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0      0.74   2.3e+02      67     110 ..     164     211 ..     148     217 .. 0.66
   2 ?    8.6   0.0   0.00046      0.15       1      51 [.     369     419 ..     369     430 .. 0.86

  Alignments for each domain:
  == domain 1    score: -2.0 bits;  conditional E-value: 0.74
   TIGR00437  67 yllnekadLvvnvvdasn..leRnLyltlQllelg..iplilalNlvd 110
                 + + e+  L+v++vda n  l R + l     el    p++l++N++d
  MMETSP1137-20121227|1257_1 164 WRVMERSQLLVQIVDARNplLFRCVDLEKYASELRppRPCMLIVNKAD 211
                 45678999********98656666666666555542235666666666 PP

  == domain 2    score: 8.6 bits;  conditional E-value: 0.00046
   TIGR00437   1 GnpNvGKstlfnaL.tgsnqkvgNwpGvTVekkegklelkgedieivDlPGi 51 
                 G pNvGKs+ +n + + ++ +v+  pG+T   ++ ++   +  i + D PG+
  MMETSP1137-20121227|1257_1 369 GYPNVGKSSTVNVMvSAKKTSVSATPGKTKHFQTLRVP-DEPGILLCDCPGL 419
                 78**********762678899********888887777.8888999999995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (666 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       108  (0.0263286); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                        21  (0.00511945); expected 4.1 (0.001)
Passed Fwd filter:                        13  (0.00316919); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.51u 0.15s 00:00:00.66 Elapsed: 00:00:00.62
# Mc/sec: 1417.82
//
Query:       MMETSP1137-20121227|1258_1  [L=527]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        5.4    3.0  12.7        5.7    2.9   8.8    1.1  1  TIGR00934 2a38euk: potassium uptake protein, Trk family


Domain annotation for each model (and alignments):
>> TIGR00934  2a38euk: potassium uptake protein, Trk family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   8.8    0.0014       5.7     298     422 ..     385     504 ..     202     527 .] 0.47

  Alignments for each domain:
  == domain 1    score: 2.9 bits;  conditional E-value: 0.0014
   TIGR00934 298 rriqekikrrlstssiekns..........qqnltrlaktksfddskavrlersktidraeasdleeldrakdfqkmveknvkaakrkkknfkkreanlklfeksryakksdrneedngn.......kkdasksneseevsl 422
                  +++e++++rl   ++ +             ++                      ++ +a+a + + ++++k+ +k   +  +++k+kk++ ++++++ k+ ++  +a + ++++++++         + ++++++ + ++ 
  MMETSP1137-20121227|1258_1 385 EKLNEQVEQRLRFYDTGEAPkknvdamkevIDE----------------------LRAQAKAESANGSKKEKKAKKEKPEGKEGKKEKKDKKENKDKKEKTADADDSAADKKKEKKEKKRkteaeaaDVAEPEKKKKKGAEA 504
                 333333333333333333221111222222111......................111222222222222221111111111111111111111111111111111111111111111110111111111111111111111 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (527 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       434  (0.105802); expected 82.0 (0.02)
Passed bias filter:                      116  (0.0282789); expected 82.0 (0.02)
Passed Vit filter:                        24  (0.0058508); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.15s 00:00:00.68 Elapsed: 00:00:00.55
# Mc/sec: 1264.70
//
Query:       MMETSP1137-20121227|1259_1  [L=554]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (554 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        68  (0.0165773); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.17s 00:00:00.52 Elapsed: 00:00:00.48
# Mc/sec: 1523.37
//
Query:       MMETSP1137-20121227|1260_1  [L=149]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (149 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        68  (0.0165773); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.15s 00:00:00.32 Elapsed: 00:00:00.30
# Mc/sec: 655.55
//
Query:       MMETSP1137-20121227|1261_1  [L=192]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.6e-05   21.9   0.0    0.00017   19.2   0.0    1.9  1  TIGR03137 AhpC: peroxiredoxin


Domain annotation for each model (and alignments):
>> TIGR03137  AhpC: peroxiredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   0.0   4.2e-08   0.00017      25     135 ..      51     151 ..      41     171 .. 0.84

  Alignments for each domain:
  == domain 1    score: 19.2 bits;  conditional E-value: 4.2e-08
   TIGR03137  25 tdedlkGkwsvlvfypadftfvcpteledladkyeelkelgvevysvstdthfvhkawhdeseaigkikypllgdptkkltrnfdvlieeaglaergtfvidpeGvikvve 135
                  +  +kGk ++l+fy ad +  c  +l+ ++ +   lk+ gv +  +  d             + + + +pl  d+  kl + +++ ++   l  r t+v+d  G++  v 
  MMETSP1137-20121227|1261_1  51 RNLGVKGKPAILFFYGADDAPSCSKQLKSFDLELPGLKQRGVAIVGIRNDK----------GAKGSDVGFPLAVDEGDKLRNLVGIKKDLGLLPGRETYVVDSSGKVISVY 151
                 56679***************************************9998774..........44456789**********9999999988888899*******999876554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (192 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        77  (0.0187713); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.21u 0.14s 00:00:00.35 Elapsed: 00:00:00.31
# Mc/sec: 817.48
//
Query:       MMETSP1137-20121227|1262_1  [L=176]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.2e-15   55.9   0.0    1.6e-15   55.5   0.0    1.2  1  TIGR02933 nifM_nitrog: nitrogen fixation protein NifM


Domain annotation for each model (and alignments):
>> TIGR02933  nifM_nitrog: nitrogen fixation protein NifM
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.5   0.0     4e-19   1.6e-15     150     217 ..      28      94 ..      12     115 .. 0.91

  Alignments for each domain:
  == domain 1    score: 55.5 bits;  conditional E-value: 4e-19
   TIGR02933 150 rrlrakreafaelaerhseCPtalegGlLGwvsrGlLypeLdaaLfqlaegeLsavieselGwhlLlC 217
                  r++a++ af +la++ s C +a  gG LGw+s+Gl+ pe d a+f   +geL  v++s+lGwh+L  
  MMETSP1137-20121227|1262_1  28 ARIKADEVAFDDLATQVSACESAARGGDLGWISPGLMVPEFDFAVFAAPAGELR-VVKSDLGWHVLRV 94 
                 699**************************************************5.89********965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (176 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        56  (0.0136519); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.17u 0.14s 00:00:00.31 Elapsed: 00:00:00.42
# Mc/sec: 553.10
//
Query:       MMETSP1137-20121227|1263_1  [L=386]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (386 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        86  (0.0209654); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.13s 00:00:00.40 Elapsed: 00:00:00.40
# Mc/sec: 1273.69
//
Query:       MMETSP1137-20121227|1264_1  [L=201]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (201 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        55  (0.0134081); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.11s 00:00:00.30 Elapsed: 00:00:00.39
# Mc/sec: 680.25
//
Query:       MMETSP1137-20121227|1265_1  [L=131]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (131 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        62  (0.0151146); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.14s 00:00:00.29 Elapsed: 00:00:00.37
# Mc/sec: 467.31
//
Query:       MMETSP1137-20121227|1266_1  [L=525]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (525 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       252  (0.0614334); expected 82.0 (0.02)
Passed bias filter:                      156  (0.0380302); expected 82.0 (0.02)
Passed Vit filter:                        20  (0.00487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.15s 00:00:00.55 Elapsed: 00:00:00.56
# Mc/sec: 1237.40
//
Query:       MMETSP1137-20121227|1267_1  [L=58]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        64  (0.0156021); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.17s 00:00:00.29 Elapsed: 00:00:00.38
# Mc/sec: 201.46
//
Query:       MMETSP1137-20121227|1268_1  [L=141]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (141 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        59  (0.0143832); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.15s 00:00:00.31 Elapsed: 00:00:00.46
# Mc/sec: 404.58
//
Query:       MMETSP1137-20121227|1269_1  [L=102]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (102 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       111  (0.02706); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.13s 00:00:00.28 Elapsed: 00:00:00.28
# Mc/sec: 480.82
//
Query:       MMETSP1137-20121227|1271_1  [L=244]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (244 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       241  (0.0587518); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.17s 00:00:00.38 Elapsed: 00:00:00.38
# Mc/sec: 847.51
//
Query:       MMETSP1137-20121227|1272_1  [L=174]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.015   11.2   0.0       0.05    9.4   0.0    1.7  2  TIGR00870 trp: transient-receptor-potential calcium channel protein


Domain annotation for each model (and alignments):
>> TIGR00870  trp: transient-receptor-potential calcium channel protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0     0.014        59     147     193 ..      23      55 ..      16      72 .. 0.48
   2 ?    9.4   0.0   1.2e-05      0.05     130     156 ..      72      98 ..      64      99 .. 0.92

  Alignments for each domain:
  == domain 1    score: -0.7 bits;  conditional E-value: 0.014
   TIGR00870 147 vklLlekgasve.........arakgdefvksqekdslyhgespLnlaaclasesi 193
                 v+ Ll +ga v+         +                       ++a   +s+ +
  MMETSP1137-20121227|1272_1  23 VRNLLLRGAAVNhhnehfwspM-----------------------SAACYSGSARV 55 
                 5555555555553333333332.......................43333344444 PP

  == domain 2    score: 9.4 bits;  conditional E-value: 1.2e-05
   TIGR00870 130 kgitalilAihkqnyeivklLlekgas 156
                  gita++ A  + + e+v++Ll+ ga+
  MMETSP1137-20121227|1272_1  72 GGITAMHTACKRGQAECVRVLLDAGAD 98 
                 69***********************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (174 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        64  (0.0156021); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.19u 0.12s 00:00:00.31 Elapsed: 00:00:00.36
# Mc/sec: 637.95
//
Query:       MMETSP1137-20121227|1273_1  [L=594]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.029   10.3   0.1      0.039    9.8   0.1    1.1  1  TIGR00396 leuS_bact: leucine--tRNA ligase


Domain annotation for each model (and alignments):
>> TIGR00396  leuS_bact: leucine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.1   9.5e-06     0.039     228     312 ..     201     286 ..     188     293 .. 0.80

  Alignments for each domain:
  == domain 1    score: 9.8 bits;  conditional E-value: 9.5e-06
   TIGR00396 228 eleFkiedekekiavfttrpdtlfgvtylalaaehplvkkvakenkkvaefik.kaeqkseaertkeekekkgvktglkai.nPltk 312
                 e++ +i+ ++ k+++  t   t f+++y + a ++ +v++v+k+ ++++e+ + +++q+s++  ++++ e++g+++  +a+  P+t+
  MMETSP1137-20121227|1273_1 201 EVDVEIALQDRKLKIIFTAGST-FALQYYVAARKERVVRRVIKTVQELREMHErMIAQESQIAGEQQAVEYSGQEPVPHAFlCPITQ 286
                 4555666667777776666655.89**********************9999862578999999999999999999887775257765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (594 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       119  (0.0290102); expected 82.0 (0.02)
Passed bias filter:                       97  (0.023647); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.17s 00:00:00.60 Elapsed: 00:00:00.46
# Mc/sec: 1704.38
//
Query:       MMETSP1137-20121227|1274_1  [L=246]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (246 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       169  (0.0411994); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.15s 00:00:00.36 Elapsed: 00:00:00.48
# Mc/sec: 676.44
//
Query:       MMETSP1137-20121227|1275_1  [L=704]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (704 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        95  (0.0231594); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.51u 0.17s 00:00:00.68 Elapsed: 00:00:00.52
# Mc/sec: 1786.93
//
Query:       MMETSP1137-20121227|1277_1  [L=204]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (204 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       111  (0.02706); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.16s 00:00:00.37 Elapsed: 00:00:00.32
# Mc/sec: 841.43
//
Query:       MMETSP1137-20121227|1278_1  [L=236]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.6e-06   25.9   0.3    3.6e-06   25.4   0.2    1.4  1  TIGR00560 pgsA: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase
     0.0002   19.3   0.1    0.00035   18.6   0.1    1.5  1  TIGR00473 pssA: CDP-diacylglycerol-serine O-phosphatidyltransferase


Domain annotation for each model (and alignments):
>> TIGR00560  pgsA: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.4   0.2   1.8e-09   3.6e-06      26      94 ..      30      99 ..       6     158 .. 0.75

  Alignments for each domain:
  == domain 1    score: 25.4 bits;  conditional E-value: 1.8e-09
   TIGR00560 26 vlslqvslliggllfliaavtDylDGylARkyklvsnfGkllDPlaDkvlvla.vliilvykglvpalll 94
                +    + ++++g l++ a+  D +DG  AR + ++s++G++lD + D+       l+  + +  + a ++
  MMETSP1137-20121227|1278_1 30 FAVAVSQPVVAGSLYMGAQALDAVDGMAARALGQSSELGRVLDMVTDRASTIClCLVLAHLYPGWIAGFA 99
                3344456789999**********************************98655535555544444444333 PP

>> TIGR00473  pssA: CDP-diacylglycerol-serine O-phosphatidyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.1   1.7e-07   0.00035      21      61 ..      38      78 ..      16     107 .. 0.83

  Alignments for each domain:
  == domain 1    score: 18.6 bits;  conditional E-value: 1.7e-07
   TIGR00473 21 veavllillslilDslDGrvArktntvskfGkelDSlaDvv 61
                v a +l + +  lD++DG++Ar  +++s++G+ lD ++D  
  MMETSP1137-20121227|1278_1 38 VVAGSLYMGAQALDAVDGMAARALGQSSELGRVLDMVTDRA 78
                567778888999************************99965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (236 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       121  (0.0294978); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.23u 0.16s 00:00:00.39 Elapsed: 00:00:00.71
# Mc/sec: 438.72
//
Query:       MMETSP1137-20121227|1279_1  [L=224]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (224 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       120  (0.029254); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.13s 00:00:00.33 Elapsed: 00:00:00.36
# Mc/sec: 821.27
//
Query:       MMETSP1137-20121227|1280_1  [L=213]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (213 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        86  (0.0209654); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.14s 00:00:00.33 Elapsed: 00:00:00.42
# Mc/sec: 669.37
//
Query:       MMETSP1137-20121227|1281_1  [L=404]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.7e-24   84.6  14.4      1e-21   75.5   1.4    2.4  3  TIGR00803 nst: UDP-galactose transporter


Domain annotation for each model (and alignments):
>> TIGR00803  nst: UDP-galactose transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.1      0.19   7.8e+02     138     138 ..     118     118 ..      89     149 .. 0.47
   2 !   75.5   1.4   2.4e-25     1e-21       1     129 [.     174     312 ..     174     324 .. 0.87
   3 !   17.8   0.7   1.1e-07   0.00043     161     222 .]     337     398 ..     330     398 .. 0.95

  Alignments for each domain:
  == domain 1    score: -2.6 bits;  conditional E-value: 0.19
   TIGR00803 138 d 138
                 +
  MMETSP1137-20121227|1281_1 118 S 118
                 2 PP

  == domain 2    score: 75.5 bits;  conditional E-value: 2.4e-25
   TIGR00803   1 klsVPiliilkqnnlvlvalgnllaagkqvT.qlkilstalmtlgslvaslgdkqwfslkllklgvaivqlvqssa.....ktlseg.....nlvvglsavlsallssglagvyfekilkdkdts..fyvrnlqlplfgllv 129
                 k++VP+ i+l  n l + al  ++a +++   qlk+l+tal+++g+l +sl  ++w +l  l+lgv+ ++ +   +          +       ++g++av + +l sg+a +yfek+lk+ d++  ++ rn ql + ++  
  MMETSP1137-20121227|1281_1 174 KMAVPAVIYLIMNVLSFFALARVDASTFAIVaQLKVLTTALCSVGVLGRSLQCRKWRALITLTLGVILISEETRPKsasagL-A--AsaplvEWMLGMAAVFVEVLLSGFACIYFEKVLKSADETysVWDRNFQLAFWSICI 312
                 8****************************988***********************************998655442225332.2..13467778899************************998878*********998876 PP

  == domain 3    score: 17.8 bits;  conditional E-value: 1.1e-07
   TIGR00803 161 lnvvgglcvglvvkyadnttksivlalsiilslllsvrlfdaklsltfalgvilvflatllY 222
                 l ++ g++v+l +k++d+++k i++  si+l + l   + d +l+   ++g+++v+++++ Y
  MMETSP1137-20121227|1281_1 337 LGAGRGVLVALSIKHTDSVMKTIATTGSIVLTTSLNAAFLDGPLNTAXIIGALVVVVSVFNY 398
                 6688999****************************************************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (404 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       147  (0.0358362); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.28u 0.15s 00:00:00.43 Elapsed: 00:00:00.56
# Mc/sec: 952.21
//
Query:       MMETSP1137-20121227|1283_1  [L=297]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (297 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       122  (0.0297416); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.17s 00:00:00.41 Elapsed: 00:00:00.31
# Mc/sec: 1264.54
//
Query:       MMETSP1137-20121227|1284_1  [L=341]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (341 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        43  (0.0104827); expected 82.0 (0.02)
Passed bias filter:                       41  (0.00999512); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.13s 00:00:00.37 Elapsed: 00:00:00.37
# Mc/sec: 1216.44
//
Query:       MMETSP1137-20121227|1285_1  [L=728]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (728 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        74  (0.01804); expected 82.0 (0.02)
Passed bias filter:                       44  (0.0107265); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.16s 00:00:00.57 Elapsed: 00:00:00.49
# Mc/sec: 1960.98
//
Query:       MMETSP1137-20121227|1286_1  [L=74]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (74 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        73  (0.0177962); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.31
# Mc/sec: 315.07
//
Query:       MMETSP1137-20121227|1287_1  [L=190]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (190 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       114  (0.0277913); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.14s 00:00:00.32 Elapsed: 00:00:00.62
# Mc/sec: 404.48
//
Query:       MMETSP1137-20121227|1288_1  [L=389]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (389 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       223  (0.0543637); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.18s 00:00:00.49 Elapsed: 00:00:00.52
# Mc/sec: 987.38
//
Query:       MMETSP1137-20121227|1289_1  [L=175]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0083   14.0   0.3      0.016   13.1   0.2    1.5  1  TIGR00012 L29: ribosomal protein L29


Domain annotation for each model (and alignments):
>> TIGR00012  L29: ribosomal protein L29
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.1   0.2     4e-06     0.016       1      56 []      60     120 ..      60     120 .. 0.85

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 4e-06
   TIGR00012   1 elrekskeELakk...lkelKkeLfeLRfqkatgqlekphrIr..qvRrdIARllTvlrek 56 
                 e+r ks+ +L+     l + K+ L + + +++ ++ e ph++r  +v +  A l+Tvl+e+
  MMETSP1137-20121227|1289_1  60 EMRLKSDYDLQRLwivLLKEKNMLTSVKHMHKRRGTEMPHKVRlsNVCKSMAILKTVLSER 120
                 78999999999974446677888**************999876559*************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (175 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        78  (0.0190151); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.19u 0.17s 00:00:00.36 Elapsed: 00:00:00.24
# Mc/sec: 962.42
//
Query:       MMETSP1137-20121227|1290_1  [L=134]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (134 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        56  (0.0136519); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.16s 00:00:00.33 Elapsed: 00:00:00.27
# Mc/sec: 655.06
//
Query:       MMETSP1137-20121227|1291_1  [L=309]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (309 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       111  (0.02706); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.16s 00:00:00.44 Elapsed: 00:00:00.38
# Mc/sec: 1073.28
//
Query:       MMETSP1137-20121227|1292_1  [L=413]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.4e-55  184.6   0.0    5.6e-55  184.2   0.0    1.1  1  TIGR00755 ksgA: dimethyladenosine transferase
     0.0032   15.1   0.0     0.0055   14.4   0.0    1.3  1  TIGR02072 BioC: biotin biosynthesis protein BioC


Domain annotation for each model (and alignments):
>> TIGR00755  ksgA: dimethyladenosine transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  184.2   0.0   2.7e-58   5.6e-55       3     253 ..      88     344 ..      87     347 .. 0.91

  Alignments for each domain:
  == domain 1    score: 184.2 bits;  conditional E-value: 2.7e-58
   TIGR00755   3 pkkslGQnflidesvlqkiveaaevee..sdvvlEiGpGlGaLTeellekakkvvaiEiDkrlaekLrkkleleekleviegDalkldleefakke....kvvsNlPYnissplvfkll.kkkklkeavlmvQkEvaerlvAkpgskeYgrlsvlvqllaevelvlkvppsaFyPkPkVeSavvrlekkeek.....plavkdeellekllkaaFsqrrKtlrnnlkkkllkkekleevleqekldekkraeklsiedflkll 253
                 +k+slGQnfl de ++++iv++++     + +v+E GpG GaLT++l   ++k++a+EiD+r++++L++  +    l+v   D+lk+dl+  a+++     ++sN+P++++sp+vfkll   +++++av+++Q Evae+l+  p++k+Yg +sv+ ql+ + e  ++++ + F+P+Pk   +v+rl+++        p++ +++++l  llk+aF+qrrK++r++lk kll+ + ++     ++l    r+e++ +e+f++l+
  MMETSP1137-20121227|1292_1  88 AKQSLGQNFLSDEAAARRIVASLHCYGdgGGQVIEFGPGQGALTKHLHPLYPKMTALEIDQRMIAILERXXD-MPSLRVERADMLKVDLQALADERggalSIISNTPFYLTSPFVFKLLgAANCVEQAVITMQLEVAEKLLSSPQTKQYGIISVMSQLFGRPERQFDIGSESFSPPPKCCVSVMRLHPTAVPrgssePFSAAQRSQLLALLKMAFEQRRKMMRQTLK-KLLPDAAVTPPESWLNL----RPEQMPPEQFVELA 344
                 689********************997755889************************************9998.899**************66655567789******************77******************************************************************997444444577899*************************.99999976655555554....77999999999997 PP

>> TIGR02072  BioC: biotin biosynthesis protein BioC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.0   2.7e-06    0.0055      21      92 ..     104     174 ..     100     192 .. 0.74

  Alignments for each domain:
  == domain 1    score: 14.4 bits;  conditional E-value: 2.7e-06
   TIGR02072  21 kkLlellkekrkfepakvLdiGcGtGiltrallkrfpqaelialDiseemleqakkkls..nvqficgdieklp 92 
                  ++++ l +++     +v+++G G G+lt++l   +p++  +al i + m++++++     ++ +  +d+ k++
  MMETSP1137-20121227|1292_1 104 RRIVASLHCYG-DGGGQVIEFGPGQGALTKHLHPLYPKM--TALEIDQRMIAILERXXDmpSLRVERADMLKVD 174
                 56666666665.34468**********************..888888888888888777775555555554444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (413 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        91  (0.0221843); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.31u 0.17s 00:00:00.48 Elapsed: 00:00:00.48
# Mc/sec: 1135.66
//
Query:       MMETSP1137-20121227|1293_1  [L=156]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (156 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        56  (0.0136519); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.16s 00:00:00.34 Elapsed: 00:00:00.38
# Mc/sec: 541.85
//
Query:       MMETSP1137-20121227|1294_1  [L=171]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (171 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        42  (0.0102389); expected 82.0 (0.02)
Passed bias filter:                       42  (0.0102389); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.13s 00:00:00.29 Elapsed: 00:00:00.28
# Mc/sec: 778.28
//
Query:       MMETSP1137-20121227|1295_1  [L=156]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (156 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        90  (0.0219405); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.12s 00:00:00.28 Elapsed: 00:00:00.54
# Mc/sec: 381.30
//
Query:       MMETSP1137-20121227|1296_1  [L=335]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0075   14.0   0.4      0.015   13.0   0.3    1.4  1  TIGR00050 rRNA_methyl_1: RNA methyltransferase, TrmH family, group 1


Domain annotation for each model (and alignments):
>> TIGR00050  rRNA_methyl_1: RNA methyltransferase, TrmH family, group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   0.3   3.6e-06     0.015      30      89 ..     256     314 ..     247     325 .. 0.88

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 3.6e-06
   TIGR00050  30 leeLilvnpkvleeeayalaagakdilenakvvddldealddldlvvgTsarsralkkvl 89 
                 l++ ++v++k+ +e a +l+a++k+i  n +v  +++ea++dl  ++    r r+l+ ++
  MMETSP1137-20121227|1296_1 256 LKDRVVVDKKAESESAATLTAHTKEI-TNEQVSASMQEAVNDLRCIIEARQRIRMLQAEI 314
                 67778999999999999********8.6789****************9999999988765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (335 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       308  (0.0750853); expected 82.0 (0.02)
Passed bias filter:                      185  (0.0451); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.32u 0.19s 00:00:00.51 Elapsed: 00:00:00.48
# Mc/sec: 921.17
//
Query:       MMETSP1137-20121227|1297_1  [L=231]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (231 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       120  (0.029254); expected 82.0 (0.02)
Passed bias filter:                      101  (0.0246221); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.16s 00:00:00.37 Elapsed: 00:00:00.56
# Mc/sec: 544.46
//
Query:       MMETSP1137-20121227|1298_1  [L=158]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (158 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        46  (0.011214); expected 82.0 (0.02)
Passed bias filter:                       44  (0.0107265); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.13s 00:00:00.29 Elapsed: 00:00:00.28
# Mc/sec: 719.11
//
Query:       MMETSP1137-20121227|1299_1  [L=42]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (42 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        13  (0.00316919); expected 82.0 (0.02)
Passed bias filter:                       13  (0.00316919); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.15s 00:00:00.25 Elapsed: 00:00:00.45
# Mc/sec: 123.19
//
Query:       MMETSP1137-20121227|1300_1  [L=277]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.3e-35  120.8   0.0    1.7e-35  120.5   0.0    1.1  1  TIGR01981 sufD: FeS assembly protein SufD
    2.5e-18   63.8   0.0    3.6e-18   63.3   0.0    1.1  1  TIGR01980 sufB: FeS assembly protein SufB


Domain annotation for each model (and alignments):
>> TIGR01981  sufD: FeS assembly protein SufD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  120.5   0.0   8.4e-39   1.7e-35     169     273 ..      74     178 ..      68     180 .. 0.96

  Alignments for each domain:
  == domain 1    score: 120.5 bits;  conditional E-value: 8.4e-39
   TIGR01981 169 vlkdkakavfrGnidvskgakktdarqsnrtLlLsdkaradtkPeLeIdaddVkasHgAtvgqldeeeLFYLrsRGldeaeAkrlliegflkevleeidveslke 273
                 +++++a++vfrG ++v+ g +++ a+q +r LlL ++a++d +P+LeI++d+V+++HgAt+  ld+e  FYL+sRGld+++A++ll eg +  +++++++++ k 
  MMETSP1137-20121227|1300_1  74 AVSGRARVVFRGAVQVPLGSDNSTAHQLCRSLLLENTAKVDVSPTLEIFTDEVECTHGATIADLDDEMVFYLQSRGLDRMQARSLLLEGWALDTMSQVPSKRSKR 178
                 689*****************************************************************************************9999999987665 PP

>> TIGR01980  sufB: FeS assembly protein SufB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.3   0.0   1.7e-21   3.6e-18     342     437 ..      77     172 ..      69     176 .. 0.96

  Alignments for each domain:
  == domain 1    score: 63.3 bits;  conditional E-value: 1.7e-21
   TIGR01980 342 dggkssyrGlvkiakkakgakssveCdslllddesasdtiPyieveedkvsveheatvskiseeqlfylrsrGlseedakamivsGfvedilkelP 437
                 + +++++rG v++  +++++ ++  C slll+++++ d  P  e++ d+v+ +h at++ +++e +fyl+srGl+  +a++++++G+  d ++++P
  MMETSP1137-20121227|1300_1  77 GRARVVFRGAVQVPLGSDNSTAHQLCRSLLLENTAKVDVSPTLEIFTDEVECTHGATIADLDDEMVFYLQSRGLDRMQARSLLLEGWALDTMSQVP 172
                 678899**********************************************************************************99999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (277 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        60  (0.014627); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.22u 0.16s 00:00:00.38 Elapsed: 00:00:00.35
# Mc/sec: 1044.60
//
Query:       MMETSP1137-20121227|1301_1  [L=286]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.6e-09   34.7   0.0    4.4e-09   33.9   0.0    1.2  1  TIGR00257 IMPACT_YIGZ: uncharacterized protein, YigZ family


Domain annotation for each model (and alignments):
>> TIGR00257  IMPACT_YIGZ: uncharacterized protein, YigZ family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.9   0.0   1.1e-12   4.4e-09      20     110 ..     120     211 ..     112     213 .. 0.83

  Alignments for each domain:
  == domain 1    score: 33.9 bits;  conditional E-value: 1.1e-12
   TIGR00257  20 kSrFitylarvekkddakkfikkikk..ehknAtHvvvafvigeeddilklg.fsDDgEPagtaGkPmLevlkkedlkdilavvvRYfGGilLG 110
                 kS F ++ arv++ ++++  i+++ +  +   AtH+++a+++ + +   ++    DDgE   +aG  + + l+  d +++l++v R++GGi LG
  MMETSP1137-20121227|1301_1 120 KSTFQAHFARVSTANQVQWAIRRLLEdrKVGRATHNIIAYRYFDAQRGVQVSdNDDDGE--NAAGGRLAALLELMDANNVLIIVSRWYGGIHLG 211
                 89*********************976115669**********98888777440345555..56788788888889999***************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (286 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        66  (0.0160897); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.23u 0.14s 00:00:00.37 Elapsed: 00:00:00.48
# Mc/sec: 786.44
//
Query:       MMETSP1137-20121227|1302_1  [L=238]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (238 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        70  (0.0170648); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.18s 00:00:00.41 Elapsed: 00:00:00.38
# Mc/sec: 826.67
//
Query:       MMETSP1137-20121227|1303_1  [L=165]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (165 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        47  (0.0114578); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.13s 00:00:00.30 Elapsed: 00:00:00.32
# Mc/sec: 680.57
//
Query:       MMETSP1137-20121227|1304_1  [L=524]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (524 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        63  (0.0153584); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.16s 00:00:00.51 Elapsed: 00:00:00.37
# Mc/sec: 1869.25
//
Query:       MMETSP1137-20121227|1305_1  [L=354]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (354 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        48  (0.0117016); expected 82.0 (0.02)
Passed bias filter:                       44  (0.0107265); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.15s 00:00:00.41 Elapsed: 00:00:00.43
# Mc/sec: 1086.61
//
Query:       MMETSP1137-20121227|1306_1  [L=751]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.032   11.4   0.0       0.07   10.3   0.0    1.6  1  TIGR03943 TIGR03943: TIGR03943 family protein


Domain annotation for each model (and alignments):
>> TIGR03943  TIGR03943: TIGR03943 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   1.7e-05      0.07       7      84 ..     318     395 ..     315     457 .. 0.79

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 1.7e-05
   TIGR03943   7 lyinpryfplllaaavvllllalvqllrdvrekeeeaehhhehktklkrrlvylllllpillgllvppaalgsdtaaq 84 
                 + + p++  +lla +++l+++ + +l+  vr     ++++h++ t   r+  ++l+++ ++l++ v    l+s++   
  MMETSP1137-20121227|1306_1 318 RDVPPHMALFLLAVLLLLFVIFMPALVSAVRLTLWLDGREHMSATEIMRPYLAALFIVLVVLLISVIIVLLTSYSRRP 395
                 678899***************999999977777666699999999999999999999999999999999998887655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (751 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       204  (0.0497318); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                        20  (0.00487567); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.18s 00:00:00.64 Elapsed: 00:00:00.82
# Mc/sec: 1208.83
//
Query:       MMETSP1137-20121227|1307_1  [L=246]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (246 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       164  (0.0399805); expected 82.0 (0.02)
Passed bias filter:                      100  (0.0243784); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.19s 00:00:00.41 Elapsed: 00:00:00.43
# Mc/sec: 755.10
//
Query:       MMETSP1137-20121227|1309_1  [L=808]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (808 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       127  (0.0309605); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.49u 0.16s 00:00:00.65 Elapsed: 00:00:00.45
# Mc/sec: 2369.94
//
Query:       MMETSP1137-20121227|1310_1  [L=359]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.1e-15   54.6   0.1    4.1e-15   53.6   0.1    1.4  1  TIGR00511 ribulose_e2b2: ribose-1,5-bisphosphate isomerase, e2b2 family
      2e-13   48.0   0.0    3.2e-13   47.3   0.0    1.2  1  TIGR00524 eIF-2B_rel: eIF-2B alpha/beta/delta-related uncharacterized proteins
    1.6e-08   31.7   0.3    2.7e-08   30.9   0.2    1.3  1  TIGR00512 salvage_mtnA: S-methyl-5-thioribose-1-phosphate isomerase
  ------ inclusion threshold ------
      0.019   11.6   0.0      0.027   11.1   0.0    1.1  1  TIGR00873 gnd: 6-phosphogluconate dehydrogenase (decarboxylating)


Domain annotation for each model (and alignments):
>> TIGR00511  ribulose_e2b2: ribose-1,5-bisphosphate isomerase, e2b2 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.6   0.1     4e-18   4.1e-15     140     231 ..      26     117 ..       6     126 .. 0.92

  Alignments for each domain:
  == domain 1    score: 53.6 bits;  conditional E-value: 4e-18
   TIGR00511 140 kdievivtetrPrkqGhitakelrelGipvtlivdsaaryflkevdkvvvGadaitanGavinkiGtsqlalaakearvsvlvaaetyklsP 231
                  +   iv e+ P   Gh ta+ ++++G+pv l+  +a+ +++ +v +v+  a a+  +G+v+  +G  +lal+a+ +++++ v+a  y ++ 
  MMETSP1137-20121227|1310_1  26 THFTLIVAESSPTGDGHETARCVASAGVPVRLLETAAVARCMSQVHMVLCAAHAVLQDGSVVGAVGCLTLALVANAHGTPFCVTAPHYCFHH 117
                 577899**********************************************************************************9985 PP

>> TIGR00524  eIF-2B_rel: eIF-2B alpha/beta/delta-related uncharacterized proteins
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.3   0.0   3.1e-16   3.2e-13     150     249 ..      25     121 ..       6     135 .. 0.90

  Alignments for each domain:
  == domain 1    score: 47.3 bits;  conditional E-value: 3.1e-16
   TIGR00524 150 gkeirvialEtRPrlqGsrLtayelveegidvtlitDsavaylikkseidavivGADrivrngdvanKiGtlqlaviakefripFfvaApkstfdtktet 249
                 + + ++i  E+ P+  G + ta  +  +g++v+l+  +ava ++   ++++v+  A +++++g+v+  +G l+la++a++++ pF v Ap + f+ +  +
  MMETSP1137-20121227|1310_1  25 ETHFTLIVAESSPTGDG-HETARCVASAGVPVRLLETAAVARCMS--QVHMVLCAAHAVLQDGSVVGAVGCLTLALVANAHGTPFCVTAPHYCFHHADAM 121
                 45677899*********.99************************9..9**********************************************987655 PP

>> TIGR00512  salvage_mtnA: S-methyl-5-thioribose-1-phosphate isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.9   0.2   2.7e-11   2.7e-08     179     274 ..      22     114 ..       6     125 .. 0.87

  Alignments for each domain:
  == domain 1    score: 30.9 bits;  conditional E-value: 2.7e-11
   TIGR00512 179 kekgllehvyadEtRPlnqGarLtawElvkegipatliaDsmaaallkegevdavivGaDRiaanGDtaNKiGtyqlavlakahgvpflvaaplst 274
                 ++++++  + + E  P   G   ta  ++++g+p+ l+   ++a +++  +v++v+  a  + ++G +   +G ++la++a+ahg pf v ap+  
  MMETSP1137-20121227|1310_1  22 TARETHFTLIVAESSPTGDGH-ETARCVASAGVPVRLLETAAVARCMS--QVHMVLCAAHAVLQDGSVVGAVGCLTLALVANAHGTPFCVTAPHYC 114
                 556666677788999999997.599999*******************9..8******************************************865 PP

>> TIGR00873  gnd: 6-phosphogluconate dehydrogenase (decarboxylating)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   2.7e-05     0.027     249     301 ..      31      83 ..      20      91 .. 0.88

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 2.7e-05
   TIGR00873 249 ildaagqkGtGkWtaidaldlGvPvtlitesvfarvlsslkeervaaskllsg 301
                 i+ +++  G G+ ta     +GvPv l+  + +ar++s ++   +aa+ +l+ 
  MMETSP1137-20121227|1310_1  31 IVAESSPTGDGHETARCVASAGVPVRLLETAAVARCMSQVHMVLCAAHAVLQD 83 
                 6677778899999********************************99999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (359 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       247  (0.0602145); expected 82.0 (0.02)
Passed bias filter:                      107  (0.0260848); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.31u 0.16s 00:00:00.47 Elapsed: 00:00:00.39
# Mc/sec: 1214.98
//
Query:       MMETSP1137-20121227|1311_1  [L=212]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (212 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        90  (0.0219405); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.15s 00:00:00.36 Elapsed: 00:00:00.32
# Mc/sec: 874.43
//
Query:       MMETSP1137-20121227|1312_1  [L=56]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       111  (0.02706); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.15s 00:00:00.26 Elapsed: 00:00:00.37
# Mc/sec: 199.77
//
Query:       MMETSP1137-20121227|1313_1  [L=298]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.6e-52  174.9   0.0    5.4e-52  173.9   0.0    1.4  1  TIGR00624 tag: DNA-3-methyladenine glycosylase I


Domain annotation for each model (and alignments):
>> TIGR00624  tag: DNA-3-methyladenine glycosylase I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  173.9   0.0   1.3e-55   5.4e-52      11     173 ..     102     283 ..      94     287 .. 0.91

  Alignments for each domain:
  == domain 1    score: 173.9 bits;  conditional E-value: 1.3e-55
   TIGR00624  11 lyrayhdnewgtplrdakalfellsleafqaglswlivlrkrenyrrafsqfdiekvarytdadverlll.......ddgivrnrakieatianaraalelesed............lvellwsfvndkpqvrqrkadseipsvsseskalskelkkrgfrfvgptiayalmqatglvddhi 173
                  y+ay  +ewg+  r  + lfe+l+le+ qaglsw ++l kre yrraf++fdi   a++tdad+erll+       +d ivr+r+ki ++  nar +l+l +e             + e+lws+v+  p++++  + s++ps  ++s  ++k+lkkrgf+fvg+ i+y+lmq++glv dh 
  MMETSP1137-20121227|1313_1 102 EYKAYMRDEWGREKRGDQPLFEKLCLEGAQAGLSWATILAKREAYRRAFYNFDIAACAAMTDADIERLLQpvadalkEDTIVRHRGKITSVQHNARCVLALIKEReeagvprpqhghFDEYLWSYVGGSPKLNRWASFSQMPSEDAASIEMAKALKKRGFKFVGAKICYSLMQSCGLVIDHP 283
                 599*****************************************************************854443333678******************999554333556777777899**************************************************************5 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (298 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        97  (0.023647); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.27u 0.15s 00:00:00.42 Elapsed: 00:00:00.37
# Mc/sec: 1063.05
//
Query:       MMETSP1137-20121227|1314_1  [L=353]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0032   15.0   0.4     0.0073   13.9   0.3    1.6  1  TIGR02552 LcrH_SycD: type III secretion low calcium response chaperone LcrH/SycD


Domain annotation for each model (and alignments):
>> TIGR02552  LcrH_SycD: type III secretion low calcium response chaperone LcrH/SycD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.3   1.8e-06    0.0073      67     133 ..     287     352 ..     284     353 .] 0.87

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 1.8e-06
   TIGR02552  67 eyeeAiaaYalaaaldlddprpvyhaaecllalgekeeAlkaLklaieiaeekeeyselkeraeaml 133
                  yeeA+a+++  a+l++++ +++y+aa    +l++k +A++ L+ a+++  +  + +e  + ++aml
  MMETSP1137-20121227|1314_1 287 TYEEALAFFEKSAQLKPNK-KAMYKAALACEKLNRKDKAQQWLRNALDLPSSGGADAETDRLCSAML 352
                 7***************986.678888888899***************99888888888877777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (353 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        75  (0.0182838); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.25u 0.13s 00:00:00.38 Elapsed: 00:00:00.49
# Mc/sec: 950.86
//
Query:       MMETSP1137-20121227|1315_1  [L=235]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.043   10.1   0.1      0.057    9.7   0.1    1.1  1  TIGR04074 bacter_Hen1: 3' terminal RNA ribose 2'-O-methyltransferase Hen1


Domain annotation for each model (and alignments):
>> TIGR04074  bacter_Hen1: 3' terminal RNA ribose 2'-O-methyltransferase Hen1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.1   1.4e-05     0.057     261     298 ..     167     210 ..     150     225 .. 0.62

  Alignments for each domain:
  == domain 1    score: 9.7 bits;  conditional E-value: 1.4e-05
   TIGR04074 261 ekkvslaeqRleavvaalr......esgarsvlDlGcGegkLlk 298
                 ++    +++ ++a+v+ l+      + +ar+++D+GcG g+ ++
  MMETSP1137-20121227|1315_1 167 RQCSDAKQSQVQALVSLLKgtpfliDGHARRIVDIGCGRGHQVS 210
                 3333344444455554444111111679***********98664 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (235 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       121  (0.0294978); expected 82.0 (0.02)
Passed bias filter:                      108  (0.0263286); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.22u 0.14s 00:00:00.36 Elapsed: 00:00:00.97
# Mc/sec: 319.77
//
Query:       MMETSP1137-20121227|1316_1  [L=114]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.6e-50  166.0   1.3      3e-50  165.8   0.9    1.0  1  TIGR02008 fdx_plant: ferredoxin [2Fe-2S]
    6.2e-17   59.2   0.5    6.9e-17   59.1   0.4    1.0  1  TIGR02160 PA_CoA_Oxy5: phenylacetate-CoA oxygenase/reductase, PaaK subunit
    0.00014   19.9   0.1    0.00016   19.7   0.1    1.1  1  TIGR02007 fdx_isc: ferredoxin, 2Fe-2S type, ISC system


Domain annotation for each model (and alignments):
>> TIGR02008  fdx_plant: ferredoxin [2Fe-2S]
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  165.8   0.9   2.2e-53     3e-50       2      97 .]      20     114 .]      19     114 .] 0.98

  Alignments for each domain:
  == domain 1    score: 165.8 bits;  conditional E-value: 2.2e-53
   TIGR02008   2 sykvklvnedgseetievpddeyildaaeeeGidlpyscraGacstcaGkvkeGtvdqsdqsfldddqleegyvltcvayptsdvkiethkeeell 97 
                 +y v+lv++dg e++ie++ d+y+ld+aeeeG+dlpyscraGacstcaG+v++G+vdqsd+sfldddq+++g+vltcvayptsdv+i+th+eeel+
  MMETSP1137-20121227|1316_1  20 MYAVTLVTPDG-EQKIECDGDTYVLDKAEEEGLDLPYSCRAGACSTCAGIVTAGSVDQSDGSFLDDDQMSNGFVLTCVAYPTSDVTIKTHQEEELF 114
                 69*********.99********************************************************************************95 PP

>> TIGR02160  PA_CoA_Oxy5: phenylacetate-CoA oxygenase/reductase, PaaK subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.1   0.4     5e-20   6.9e-17     265     346 ..      23     103 ..       5     108 .. 0.84

  Alignments for each domain:
  == domain 1    score: 59.1 bits;  conditional E-value: 5e-20
   TIGR02160 265 vt.vtldGlsreislsaedesvldaalraradlPfackgGvcgtcrakvleGkvemeknyalepdevdaGyvltcqarPlsdk 346
                 vt vt dG +++ +    d  vld a  ++ dlP++c++G c+tc   v+ G+v+      l+ d++  G+vltc a+P sd 
  MMETSP1137-20121227|1316_1  23 VTlVTPDGEQKI-E-CDGDTYVLDKAEEEGLDLPYSCRAGACSTCAGIVTAGSVDQSDGSFLDDDQMSNGFVLTCVAYPTSDV 103
                 442567887743.3.345789**********************************************************9874 PP

>> TIGR02007  fdx_isc: ferredoxin, 2Fe-2S type, ISC system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.1   1.1e-07   0.00016      11      76 ..      26      91 ..      19     109 .. 0.83

  Alignments for each domain:
  == domain 1    score: 19.7 bits;  conditional E-value: 1.1e-07
   TIGR02007 11 lcpeGa.vveakeGetildvalkaeieiehacekscacttchvivrkGfdsleeasekeedlldkaw 76
                + p+G   +e++  + +ld a ++++++  +c  + ac+tc  iv  G    ++ s  ++d + + +
  MMETSP1137-20121227|1316_1 26 VTPDGEqKIECDGDTYVLDKAEEEGLDLPYSCR-AGACSTCAGIVTAGSVDQSDGSFLDDDQMSNGF 91
                5788852699999999****************6.68************9888888888888776655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (114 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        79  (0.0192589); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.16u 0.13s 00:00:00.29 Elapsed: 00:00:00.33
# Mc/sec: 455.96
//
Query:       MMETSP1137-20121227|1317_1  [L=356]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.014   12.3   0.1      0.047   10.6   0.0    1.8  2  TIGR03945 PLP_SbnA_fam: 2,3-diaminopropionate biosynthesis protein SbnA


Domain annotation for each model (and alignments):
>> TIGR03945  PLP_SbnA_fam: 2,3-diaminopropionate biosynthesis protein SbnA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0     0.039   1.6e+02     261     291 ..      41      74 ..      39      76 .. 0.72
   2 ?   10.6   0.0   1.2e-05     0.047      65     113 ..      76     124 ..      66     131 .. 0.91

  Alignments for each domain:
  == domain 1    score: -1.0 bits;  conditional E-value: 0.039
   TIGR03945 261 gSsGtvvaavkkllak...ieegstvvailpDrG 291
                 +S+Gt++a+   ++++   +++++ v +i++D+G
  MMETSP1137-20121227|1317_1  41 ASTGTCLAGSCSCTRSttpLPDKAVVTLITSDTG 74 
                 7999999986665555333777788888999998 PP

  == domain 2    score: 10.6 bits;  conditional E-value: 1.2e-05
   TIGR03945  65 sSGnlaiaLamvcaalGlkficvvDpkiseanlkllralgaevevveek 113
                 s G laia a  +    l+ i++v p+++e+ ++llr+ + ev+vv++ 
  MMETSP1137-20121227|1317_1  76 SAGALAIASALEALGSSLRRIVLVTPNVAENIRELLRQASWEVQVVDTI 124
                 899*******************************************975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (356 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        98  (0.0238908); expected 82.0 (0.02)
Passed bias filter:                       96  (0.0234032); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.30u 0.17s 00:00:00.47 Elapsed: 00:00:01.47
# Mc/sec: 319.65
//
Query:       MMETSP1137-20121227|1318_1  [L=190]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (190 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       157  (0.038274); expected 82.0 (0.02)
Passed bias filter:                      112  (0.0273038); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.17s 00:00:00.37 Elapsed: 00:00:00.56
# Mc/sec: 447.82
//
Query:       MMETSP1137-20121227|1319_1  [L=253]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (253 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       139  (0.0338859); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.17s 00:00:00.38 Elapsed: 00:00:00.33
# Mc/sec: 1011.92
//
Query:       MMETSP1137-20121227|1321_1  [L=104]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (104 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       112  (0.0273038); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.12s 00:00:00.26 Elapsed: 00:00:00.26
# Mc/sec: 527.96
//
Query:       MMETSP1137-20121227|1323_1  [L=652]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (652 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       157  (0.038274); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.17s 00:00:00.57 Elapsed: 00:00:00.70
# Mc/sec: 1229.38
//
Query:       MMETSP1137-20121227|1324_1  [L=291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.8e-54  181.8   1.6    5.3e-54  181.3   1.1    1.2  1  TIGR01033 TIGR01033: DNA-binding regulatory protein, YebC/PmpR family


Domain annotation for each model (and alignments):
>> TIGR01033  TIGR01033: DNA-binding regulatory protein, YebC/PmpR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  181.3   1.1   1.3e-57   5.3e-54       2     238 .]      46     290 ..      45     290 .. 0.91

  Alignments for each domain:
  == domain 1    score: 181.3 bits;  conditional E-value: 1.3e-57
   TIGR01033   2 aGhskwanikhrkekqdakkgkiftklikeiivAakeGggdpesNprLrtaiekAkaanlpkdnieraikkgageadeenyeeitYEgyapgGvavlvealtDNknRtaselrsalnkkggsLgesgsvsylFsrkgvievekeeieeeellealieagae..........dieeedde..ievitepeelekvkeaLekkglkieeaeiklipettveldeeqaekllklidalEdldDvqevyhNle 238
                 +G+ k++n k + +k     +k  + + k++++A+k Gg dpe+N  L  ++ +A + ++pkd +er+ikk+ +   +e+y+e+tYE+y+ gGv+ ++++l+DN+nR++++++ +++k+g + +++gsv+++F+rkg ++++k ei+e+elle+++eag +          d +++++e  + vite +el +++ +L+++ + ++ a +  ip ttve+  e+ e+++k id+lE+ldDv +v hN++
  MMETSP1137-20121227|1324_1  46 MGR-KFENNKLKMAKTALAYAKKASYIGKKVVIAVKSGGDDPETNRALASVLREANSLDVPKDVVERNIKKAMD-PVTEDYKELTYEAYGYGGVGFIINVLSDNNNRATADVNMIVSKTGCKSASAGSVAFNFQRKGRLTLNK-EITEDELLEMAVEAGCDgdvsleqpdpDGRSDGEEvkCVVITEATELGALQAVLQEADIGCSGALV-QIPLTTVECSPEDEEANFKAIDRLEELDDVTNVEHNMK 290
                 688.9*********************************************************************.999*****************************************************************.79************98753322222112223344477899*********************97765.59**********************************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (291 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       151  (0.0368113); expected 82.0 (0.02)
Passed bias filter:                      105  (0.0255973); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.24u 0.15s 00:00:00.39 Elapsed: 00:00:00.83
# Mc/sec: 462.76
//
Query:       MMETSP1137-20121227|1325_1  [L=888]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (888 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        86  (0.0209654); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.55u 0.16s 00:00:00.71 Elapsed: 00:00:00.64
# Mc/sec: 1831.35
//
Query:       MMETSP1137-20121227|1326_1  [L=156]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (156 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       155  (0.0377864); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.13s 00:00:00.29 Elapsed: 00:00:00.28
# Mc/sec: 710.01
//
Query:       MMETSP1137-20121227|1327_1  [L=393]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.9e-13   44.8   0.0    1.8e-12   43.8   0.0    1.4  1  TIGR03903 TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
     0.0035   14.6   0.0     0.0057   14.0   0.0    1.2  1  TIGR03724 arch_bud32: Kae1-associated kinase Bud32
  ------ inclusion threshold ------
      0.037   10.4   0.0       0.12    8.8   0.0    1.7  2  TIGR01982 UbiB: 2-polyprenylphenol 6-hydroxylase


Domain annotation for each model (and alignments):
>> TIGR03903  TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.8   0.0   1.3e-15   1.8e-12       3     183 ..      79     270 ..      78     282 .. 0.80

  Alignments for each domain:
  == domain 1    score: 43.8 bits;  conditional E-value: 1.3e-15
   TIGR03903   3 ghkvaikllRedaaeeerlvaRFrReialCarLshPnivaLlDsGeaedgllFavFeyve............GrtlrevLaadGaLpaaetgrLmlqvLDalaaahda.....GvvhRDLkPqnimvsaadveshakvLDFGigaLlpgvedadeatltrttevlGsPaYaaPeqLRgepvtaksDlYaWGLivleCL 183
                 g+ va+k+l+ ++ +++  +     e +l  rL+  ++ + l +G+ +d + F v    e            G  + e+  a    p+a  ++  lq   al   hd       v+hRDLkP+ni  +  +      + DFG++ + p+  +   + + + t  +Gs  Y aPe     p  ++s++ +W Li+   L
  MMETSP1137-20121227|1327_1  79 GQPVAVKVLKAEHLTDKMAIDDLNGEGQLLYRLNNAHVLRSLARGKVQD-RPFVVLQALEsmltkklpgpkvGTPIWERSRACKLWPPARAVETGLQLARALKYCHDDavpgsSVLHRDLKPDNIGFASDGR---LVLFDFGLAKVIPQDAK--DLAAVKMTGEVGSTRYMAPEVCLSKPYGTASEICSWALIMWQLL 270
                 578********************************************99.88888876542122222222223445566667777899******************9723322479*********9987664...5799*******995433..33334444458****************************97655 PP

>> TIGR03724  arch_bud32: Kae1-associated kinase Bud32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.0   4.1e-06    0.0057     110     141 ..     191     224 ..     165     238 .. 0.80

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 4.1e-06
   TIGR03724 110 givhgDlttsNiiv.kddklyliDfGLgkk.ske 141
                  ++h Dl + Ni + +d++l+l DfGL+k+  ++
  MMETSP1137-20121227|1327_1 191 SVLHRDLKPDNIGFaSDGRLVLFDFGLAKViPQD 224
                 689*********995799**********973333 PP

>> TIGR01982  UbiB: 2-polyprenylphenol 6-hydroxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0      0.11   1.5e+02     130     150 ..      70      89 ..      61     122 .. 0.82
   2 ?    8.8   0.0   8.5e-05      0.12     275     316 ..     190     231 ..     173     245 .. 0.83

  Alignments for each domain:
  == domain 1    score: -1.5 bits;  conditional E-value: 0.11
   TIGR01982 130 aQvhkAvlvegkeVavKvlRP 150
                   v+ A+l +g+ VavKvl+ 
  MMETSP1137-20121227|1327_1  70 CDVFLAQL-RGQPVAVKVLKA 89 
                 56777775.799******975 PP

  == domain 2    score: 8.8 bits;  conditional E-value: 8.5e-05
   TIGR01982 275 dgfFHaDlHpGNilvakdgkiialDfGivgrlseeerrylae 316
                  ++ H Dl p Ni  a+dg++++ DfG+   + ++++   a 
  MMETSP1137-20121227|1327_1 190 SSVLHRDLKPDNIGFASDGRLVLFDFGLAKVIPQDAKDLAAV 231
                 5689***********************988887777766655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (393 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        66  (0.0160897); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.33u 0.15s 00:00:00.48 Elapsed: 00:00:00.46
# Mc/sec: 1127.65
//
Query:       MMETSP1137-20121227|1328_1  [L=56]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        28  (0.00682594); expected 82.0 (0.02)
Passed bias filter:                       28  (0.00682594); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.13s 00:00:00.25 Elapsed: 00:00:00.24
# Mc/sec: 307.97
//
Query:       MMETSP1137-20121227|1330_1  [L=276]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (276 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       203  (0.0494881); expected 82.0 (0.02)
Passed bias filter:                      105  (0.0255973); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.18s 00:00:00.43 Elapsed: 00:00:00.50
# Mc/sec: 728.58
//
Query:       MMETSP1137-20121227|1331_1  [L=351]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (351 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        59  (0.0143832); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.12s 00:00:00.38 Elapsed: 00:00:00.39
# Mc/sec: 1187.90
//
Query:       MMETSP1137-20121227|1332_1  [L=1048]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0014   14.2  47.4     0.0025   13.4  32.9    1.4  1  TIGR00927 2A1904: K+-dependent Na+/Ca+ exchanger


Domain annotation for each model (and alignments):
>> TIGR00927  2A1904: K+-dependent Na+/Ca+ exchanger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4  32.9     6e-07    0.0025     714    1002 ..     739    1027 ..     635    1043 .. 0.63

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 6e-07
   TIGR00927  714 deeepaklpevtvtpap........apedkgdqeedpgsqgdvaeaeakgertgeeaeaeteaegekdeesggeaeqegeseekaeeeseGeieaerkgedegegeieakeaevkGeeeeeeveaeeeteaeGd.edegeieaeeeGeekededegeieakeevevegdedeteieaeeeaevkededeGeieaeedgevkGdegeeqkveaeeeeeedekdegeedeeeiaddeevkdetgeqelnaenq.gea.kedekGvdgeggsdGGdseeeeeeeeeeeeeeeeeeeeeeeeee 1002
                  d +e  kl + ++ p p          e kgd+++d g ++d ++ e   +  +++ e+et ++++ +++++++ + +g++++  e+++    + +  ++d+++g  +a+ a+v G  + + + a  ++e   + e     +a+++G   + +  + ++a     +e+d++ +     +++  k +   Ge +      ++G++ + +++ + + +++    +     +e+++++++ de   + +  ++  ge   + e+ v +e++ +G + +e+e e ee+  ee eee ee+ ee+
  MMETSP1137-20121227|1332_1  739 DSQERLKLGSYVIGPKPprrsssiiKKERKGDEDDDVGGDDDDDDDEYDDDDDDDDDESETASNSKGGDNENDDDD-DGQDDDADEDDDVY--DDDDDDDDDDDGVEKAEGADVVGA-DRSRLGAAADAEXRVApESGTARQAGASGAAADAD--ASADA-----SEADRQAAADGPVKDGLRKIHASVGEKKQLRPDAMQGKDAARKAASTPQPRDAMLPPDAAAPAGEQSSGSGCSDEAAAATVDGDDAdGEGiDDAEDDVWDEEELEGEEWDEDELEGEEDWGEEGEEEWEEDGEEN 1027
                  4455566666666655522222211357899999999999999999988888888888887777766665555433.33333333333332..333456677777778888888888.55555555555544420333344455555444433..33333.....344544444444555666666777777777777788888877777777777777777777777777777777777777666655431343133355666666666666555554444432222222222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1048 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       231  (0.056314); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.75u 0.15s 00:00:00.90 Elapsed: 00:00:00.56
# Mc/sec: 2426.75
//
Query:       MMETSP1137-20121227|1333_1  [L=649]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (649 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       128  (0.0312043); expected 82.0 (0.02)
Passed bias filter:                       98  (0.0238908); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.17s 00:00:00.57 Elapsed: 00:00:00.43
# Mc/sec: 1992.11
//
Query:       MMETSP1137-20121227|1334_1  [L=57]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        23  (0.00560702); expected 82.0 (0.02)
Passed bias filter:                       22  (0.00536324); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.41
# Mc/sec: 183.50
//
Query:       MMETSP1137-20121227|1335_1  [L=97]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (97 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       297  (0.0724037); expected 82.0 (0.02)
Passed bias filter:                      157  (0.038274); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.17s 00:00:00.34 Elapsed: 00:00:00.46
# Mc/sec: 278.32
//
Query:       MMETSP1137-20121227|1336_1  [L=158]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.5e-36  122.6   0.0      5e-36  122.5   0.0    1.0  1  TIGR01245 trpD: anthranilate phosphoribosyltransferase


Domain annotation for each model (and alignments):
>> TIGR01245  trpD: anthranilate phosphoribosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  122.5   0.0   1.2e-39     5e-36     178     329 ..       1     151 [.       1     152 [. 0.99

  Alignments for each domain:
  == domain 1    score: 122.5 bits;  conditional E-value: 1.2e-39
   TIGR01245 178 lnParaklqvlGvyskdlvevlaevlknlgvkralvvhgedglDEisltgetkvaelkdgeieeytlspedfglkraeleelkggsaeenaellkevlegkekkakrdivvlNaaaalyvagkakdlkegvelakeaiksgkalekleelva 329
                 lnPa+ ++ ++Gvys+ lv ++a +l++lgv+ a+vvh  +glDE+++++ ++va ++   +e ++l+p ++g++r+++ +lkgg+  en ++l+e+l+g  +++ ++ v+lNa+a l v+gka++++eg+++a++a+  g +++++e++++
  MMETSP1137-20121227|1336_1   1 LNPAACTRMLIGVYSEALVPLMADALHALGVEFAMVVHC-GGLDELAPIAVATVAYVRPSGVELSQLNPFEMGFARCTIADLKGGDKTENGKILMEILSGTRSGPVTETVILNAGAGLFVSGKASTVQEGCKMARDALLAGTPAKTFEKWAR 151
                 69*************************************.*************************************************************************************************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (158 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        95  (0.0231594); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.17u 0.15s 00:00:00.32 Elapsed: 00:00:00.47
# Mc/sec: 443.71
//
Query:       MMETSP1137-20121227|1337_1  [L=326]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (326 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        46  (0.011214); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.16s 00:00:00.40 Elapsed: 00:00:00.38
# Mc/sec: 1132.33
//
Query:       MMETSP1137-20121227|1339_1  [L=364]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.2e-76  254.5   6.6    4.7e-76  254.0   4.6    1.2  1  TIGR03718 R_switched_Alx: integral membrane protein, TerC family
    4.3e-13   47.2   3.6    7.3e-13   46.4   2.5    1.3  1  TIGR03716 R_switched_YkoY: integral membrane protein, YkoY family
    3.1e-09   34.7   0.3    6.8e-08   30.3   0.1    2.7  2  TIGR03717 R_switched_YjbE: integral membrane protein, YjbE family


Domain annotation for each model (and alignments):
>> TIGR03718  R_switched_Alx: integral membrane protein, TerC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  254.0   4.6   3.4e-79   4.7e-76      42     301 ..     104     352 ..      86     354 .. 0.93

  Alignments for each domain:
  == domain 1    score: 254.0 bits;  conditional E-value: 3.4e-79
   TIGR03718  42 vwvalallFavlvylllgaeaalefltgyllEksLsvDNlfvfllifssfavprelqhrvLlwGilgalvlRaifialGaalleqfswvlyifgafliytgvkmlleeeeeedleenllvrllkkvlpvtdklegekffvrekgkrlatplllvlvlveltdliFAvDSiPaifavtqdpfivytsnifailGLralYfllagllerlvyLkyglaviLvfigvKlllseaelveipiavsLavivavlavsvvasllkt 301
                 + v  al F+++v+++ g+e a+ +++          DNlfvf lif +f+ p   q rvL wG+++a+vlRa fi++G a++e+f+ vl+  +++l+y+++ +l+e++++edl++n++v+l++++lp tdk++ ++ff+  +g++latpll++lv++el+d++FAvDS+Pa+f+vt+dpfi +tsn failGLr+lY l+++ le+l+yL+ ++a++L+fig+K+l   a  +e+++a sL v++++l+v++ asll++
  MMETSP1137-20121227|1339_1 104 AAVFAALFFTGAVFYFRGPEDATAWFA----------DNLFVFSLIFDYFKTPIFAQGRVLAWGLFAAVVLRATFILAGLAVVERFKIVLLPCAVLLLYSAYGILQEDDDDEDLSDNAIVKLVNRYLPSTDKYDSDRFFTSVDGALLATPLLVALVCIELSDVVFAVDSVPAVFGVTTDPFIAFTSNTFAILGLRQLYTLISEGLENLAYLRPSIALVLAFIGFKILAGFAG-FEVSTASSLLVVAGALGVGIGASLLVE 352
                 445567777777777777777777765..........**********************************************************************************************************************************************************************************************88555.6***********************976 PP

>> TIGR03716  R_switched_YkoY: integral membrane protein, YkoY family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.4   2.5   5.4e-16   7.3e-13      14     181 ..     130     324 ..     127     342 .. 0.84

  Alignments for each domain:
  == domain 1    score: 46.4 bits;  conditional E-value: 5.4e-16
   TIGR03716  14 aDnAvvlAvlvkhL..PekqrkkaLfYgliGAyvfRfialllasfliklweikal.galYLlylalkhllkkkkekeeeekekkkek..........................keFWktvikveladlaFsvDsilaavalsekllvvllGgllGillmRfvaelfvkllekipeLetaAfllvglvgvkllletla 181
                 aDn  v+ ++      P   + + L +gl+ A v+R +++l++  +++  +i +l  a+ Lly a+  l +  ++++ ++++  k                            +     ++ +el d++F+vDs+ a ++++++ ++ +    + il +R + +l+ + le+++ L  +  l+++++g+k+l   +a
  MMETSP1137-20121227|1339_1 130 ADNLFVFSLIFDYFktPIFAQGRVLAWGLFAAVVLRATFILAGLAVVERFKIVLLpCAVLLLYSAYGILQEDDDDEDLSDNAIVK-LvnrylpstdkydsdrfftsvdgallaTPLLVALVCIELSDVVFAVDSVPAVFGVTTDPFIAFTSNTFAILGLRQLYTLISEGLENLAYLRPSIALVLAFIGFKILA-GFA 324
                 5666666666654411556899*************************98888877357777787777776666555555444443.25899******************99998899999**********************************************************************987.555 PP

>> TIGR03717  R_switched_YjbE: integral membrane protein, YjbE family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.3   0.1     5e-11   6.8e-08      15     146 ..     131     300 ..     128     325 .. 0.76
   2 ?   -0.0   0.0       0.1   1.4e+02      60      89 ..     331     360 ..     313     364 .] 0.79

  Alignments for each domain:
  == domain 1    score: 30.3 bits;  conditional E-value: 5e-11
   TIGR03717  15 DnavvialaarkL..pkkqrkkailvGvaaAvvlRillalvavllLe.ipllkliggllLlwiavkllleeeeeeeeeekase.............................tllkaiktiviADvvmslDnvlavagaakg......ellllvlGlllsiplivlgskl 146
                 Dn  v +l    +  p   + +++ +G++aAvvlR +++l+ + ++e  +++ l  ++lLl+ a+ +l+e++++e+ + +a                                ll a+  i + Dvv+++D v av g++++      + ++ +lGl    +li  g + 
  MMETSP1137-20121227|1339_1 131 DNLFVFSLIFDYFktPIFAQGRVLAWGLFAAVVLRATFILAGLAVVErFKIVLLPCAVLLLYSAYGILQEDDDDEDLSDNAIVklvnrylpstdkydsdrfftsvdgallatPLLVALVCIELSDVVFAVDSVPAVFGVTTDpfiaftSNTFAILGLRQLYTLISEGLEN 300
                 666666666654411445678999**************999877775277888999*************999998876444337999************************999*************************9995555555556666665555555544444 PP

  == domain 2    score: -0.0 bits;  conditional E-value: 0.1
   TIGR03717  60 ipllkliggllLlwiavkllleeeeeeeee 89 
                    l +++g+l + i+ +ll e+ +++++e
  MMETSP1137-20121227|1339_1 331 ASSLLVVAGALGVGIGASLLVETADAQDAE 360
                 5678999999999******99999988775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (364 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       114  (0.0277913); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.31u 0.14s 00:00:00.45 Elapsed: 00:00:00.52
# Mc/sec: 923.92
//
Query:       MMETSP1137-20121227|1340_1  [L=42]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (42 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        41  (0.00999512); expected 82.0 (0.02)
Passed bias filter:                       28  (0.00682594); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:00.39
# Mc/sec: 142.14
//
Query:       MMETSP1137-20121227|1341_1  [L=136]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (136 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        71  (0.0173086); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.17s 00:00:00.32 Elapsed: 00:00:00.40
# Mc/sec: 448.76
//
Query:       MMETSP1137-20121227|1342_1  [L=958]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0017   15.9   0.4        1.6    6.2   0.0    3.2  3  TIGR03598 GTPase_YsxC: ribosome biogenesis GTP-binding protein YsxC
     0.0022   15.6   0.0      0.034   11.8   0.0    2.4  2  TIGR00231 small_GTP: small GTP-binding protein domain


Domain annotation for each model (and alignments):
>> TIGR03598  GTPase_YsxC: ribosome biogenesis GTP-binding protein YsxC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.1      0.25   5.1e+02     116     148 ..     243     275 ..     224     296 .. 0.72
   2 !    6.2   0.0   0.00078       1.6      65      92 ..     326     353 ..     304     364 .. 0.75
   3 !    5.9   0.0   0.00099         2      95     161 ..     374     439 ..     371     461 .. 0.84

  Alignments for each domain:
  == domain 1    score: -2.0 bits;  conditional E-value: 0.25
   TIGR03598 116 elDlellellkeakipvlvvltKaDklkkselk 148
                 + D++ + +++e+k++ +v+ + +D  k + ++
  MMETSP1137-20121227|1342_1 243 AADQQYFPTAAERKVQAMVLQSECDDEKAELKA 275
                 579999999999999999999999976655443 PP

  == domain 2    score: 6.2 bits;  conditional E-value: 0.00078
   TIGR03598  65 elrlvDlPGYGyakvskeekekwqklie 92 
                 +++lvD PGYG +  ++e+ +++ k +e
  MMETSP1137-20121227|1342_1 326 QVTLVDTPGYGESTNTEESFDTICKYVE 353
                 789********99888887766666655 PP

  == domain 3    score: 5.9 bits;  conditional E-value: 0.00099
   TIGR03598  95 LekrenLkgvvllvDirhelkelDlellellkeakipvlvvltKaDklkkselkkalkkvkkelkke 161
                 L++ + L +v+l + + h+lk++D  +++ l++  ++++ ++ K+D ++++e+++ + +v++ l+ e
  MMETSP1137-20121227|1342_1 374 LRNEDPLIHVCLYFIAPHRLKHIDVAFMRRLHK-WVNIVPIIAKSDTMTTNEKEEFKLQVREMLARE 439
                 566777888888888999**********99865.6899999**************999999998876 PP

>> TIGR00231  small_GTP: small GTP-binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.8   0.0   1.6e-05     0.034       4      27 ..     117     140 ..     114     171 .. 0.81
   2 ?    0.9   0.0     0.036        73      49      63 ..     321     337 ..     302     353 .. 0.72

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 1.6e-05
   TIGR00231   4 ikivivGhvdvGKstLlnsllknk 27 
                 +++ +vG+ + GK+tLl+s+ k  
  MMETSP1137-20121227|1342_1 117 FNLMVVGEAGLGKTTLLESFFKSF 140
                 7999***************98765 PP

  == domain 2    score: 0.9 bits;  conditional E-value: 0.036
   TIGR00231  49 dGktykvnllDTaG..q 63 
                      +v+l+DT+G  +
  MMETSP1137-20121227|1342_1 321 GKHXLQVTLVDTPGygE 337
                 4444899*******541 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (958 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       363  (0.0884934); expected 82.0 (0.02)
Passed bias filter:                      129  (0.0314481); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.76u 0.18s 00:00:00.94 Elapsed: 00:00:00.96
# Mc/sec: 1317.14
//
Query:       MMETSP1137-20121227|1343_1  [L=241]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (241 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       103  (0.0251097); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.13s 00:00:00.33 Elapsed: 00:00:00.41
# Mc/sec: 775.84
//
Query:       MMETSP1137-20121227|1344_1  [L=489]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (489 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        74  (0.01804); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.13s 00:00:00.46 Elapsed: 00:00:00.47
# Mc/sec: 1373.25
//
Query:       MMETSP1137-20121227|1345_1  [L=287]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (287 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        65  (0.0158459); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.15s 00:00:00.37 Elapsed: 00:00:00.43
# Mc/sec: 880.95
//
Query:       MMETSP1137-20121227|1346_1  [L=292]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (292 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        51  (0.012433); expected 82.0 (0.02)
Passed bias filter:                       44  (0.0107265); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.16s 00:00:00.40 Elapsed: 00:00:00.37
# Mc/sec: 1041.64
//
Query:       MMETSP1137-20121227|1347_1  [L=133]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.4e-15   53.9   0.2    5.8e-15   53.6   0.1    1.1  1  TIGR01385 TFSII: transcription elongation factor S-II


Domain annotation for each model (and alignments):
>> TIGR01385  TFSII: transcription elongation factor S-II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.6   0.1   1.4e-18   5.8e-15       6      82 ..      49     123 ..      44     131 .. 0.81

  Alignments for each domain:
  == domain 1    score: 53.6 bits;  conditional E-value: 1.4e-18
   TIGR01385   6 saakaldkvvssknveqvidilkqLkklpvteellketkvGlkvnklrkkpnedikklakeliksWKkvvikeekse 82 
                 +  k l++  s  +  + +  l++L  +p t  ll +t++G+ v+klrk+ n+di++la +++k WK ++++++ +e
  MMETSP1137-20121227|1347_1  49 QLRKLLEDESS--DNVTLLATLRRLAAMPCTRSLLASTRIGVAVGKLRKHENKDIANLAASIVKVWKSQLKEHRDQE 123
                 34444444444..45578999*************************************************9955554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (133 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       100  (0.0243784); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.18u 0.10s 00:00:00.28 Elapsed: 00:00:00.54
# Mc/sec: 325.08
//
Query:       MMETSP1137-20121227|1348_1  [L=1173]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   1.7e-285  947.3   0.0   2.2e-285  947.0   0.0    1.1  1  TIGR00392 ileS: isoleucine--tRNA ligase
   2.3e-124  414.1   0.0    5.4e-84  280.5   0.0    2.7  3  TIGR00422 valS: valine--tRNA ligase
    6.2e-39  131.5   0.5    1.4e-21   74.1   0.1    2.5  2  TIGR00395 leuS_arch: leucine--tRNA ligase
    6.8e-30  101.7   3.4    1.1e-13   48.0   0.1    5.4  4  TIGR00396 leuS_bact: leucine--tRNA ligase
    2.8e-19   67.1   2.2    2.9e-07   27.4   0.0    3.8  3  TIGR00398 metG: methionine--tRNA ligase
     0.0017   15.3   0.0     0.0031   14.5   0.0    1.3  1  TIGR00435 cysS: cysteine--tRNA ligase


Domain annotation for each model (and alignments):
>> TIGR00392  ileS: isoleucine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  947.0   0.0  3.3e-288  2.2e-285       2     857 ..       8     871 ..       7     875 .. 0.95

  Alignments for each domain:
  == domain 1    score: 947.0 bits;  conditional E-value: 3.3e-288
   TIGR00392   2 feekanlskkeekilkkweekdifekvkkkkedkkefvlhdGPPyanGeihlghalnkilKDiilryktmqGfkverkpGWDtHGLPiElkvekklgiekkeeiesleveefrekcrefalkaieeqkeqfqrlgvlvDfekpYltldkeyeesvlellkelaekgllkrdlkvvywspeletaLaeaEveykeykdvkdpsiyvkfkvkkeekteakvklslliWTtTPWTLpsNlaiavnpdleYalveleskeevlilakkllekllkkage........edleiikkvkgsdlegleyehplsekkeqleevafvvlggdhVttedGtGivHtAPghGeeDyevgkkygle....evllpvdekgvyteevadlkgrfvkdadkdvlkankaiiekLkeknlllkaekikHsyPhcwRtkkPviyrateqwFikvkeikeelleeikkvkwvpekg.ekRlkkmlenrkdWciSRqRyWGvPipvwvaekteelivvgsieeleekiekkgidawiedlhkdlldkitlkskeg.geykreedvlDvWfdSGsspyavleyklen.ekkkevfpadlilEGsDQtrGWFyssllisvalsdkapykkvithGfvldekGrKMSKslgNvvdpekvikkyGaDvlRlyvass..dpaedlkfseeilkevaekllkilnntlrFllly...anLdkfkp..eekslkveklkelDrwilsklnslveeveealekyeflkvlraledfvseeLsnwYlriskdrlyaekkdedkraaqttlyeiletlvkllapilpflaeeiyqnlkeek..keesvhlnefpevdeeavdealeasmklvkeiveavlalrdkvnkklrqplkelvikksdeeal 857
                 ++e+++++++ee++lk wee+d f+++ +++e+k+ ++++dGPP+a+G +h+gh+l+ ++KDi++ry+  +G+ v+r++GWD+HGLP+E++++kkl+i++++++ ++ v++++++cr +++++ +e++ +++r+g+++Dfe++Y+t++  ++esv++++k+l++kgl++r++kv+++s  ++t+L+++Ev++ +yk+v+dps++ +f++ + +  +  + ++l++WTtTPWTLpsNla++vnp+ +Y+ +++e    ++il +++l +l+ ++++        +++++++++kg+dl+gl+y++p+ ++++++  + f+v++g +Vt e+GtGivH AP++GeeDy v+  +g+     ++++p+d++g++t+ev +++grfvkdadkd++k        Lkek+++++a+ i+HsyP+cwR+++P+iyra++  Fi+v++i+++l++++++++wvp+ + ekR++++le+++dW++SR+R+WG+Pip+wv++++ee++v+gsi+elee   ++g++  i+dlh++++d+itl s+ g g++kr+ +v+D+Wf+SGs+pya+++y++en e ++++fpad+i+EG+DQtrGWFy+++++s+al+dk ++k++i++G+vl+e+G+KMSK++ N+ +pe +i++yGaD+lRly+++s    a dl f+e ++k+  + ++ +++ ++r +++    + L+       + +++ ++ +++Drwil+  n lv+ +++++e+y +++v+ +l d v++ L+nwY+r++k+r+  e+ ++ ++a   tlye+l  l++++ap++pf +e +y+nl + +    esvh+  +pev++ a+de++ a+++l+++++e  + +rd+ n ++r+pl + +  +s+ +al
  MMETSP1137-20121227|1348_1   8 VPERFSFPENEEEVLKWWEEHDTFKESIRRSEGKPYYSFYDGPPFATGLPHYGHILAGTIKDIVCRYAHQTGHCVQRRFGWDCHGLPVEYEIDKKLNITGRDDVLKMGVDKYNAECRAIVMRYSKEWEATVKRVGRWIDFENDYKTMNITFMESVWWVFKQLHDKGLVYRGFKVMPYSCPCSTPLSNFEVQQ-NYKEVDDPSVVCAFPLLEGSGRA--KGTALVAWTTTPWTLPSNLALCVNPEKDYVEIRDEASGTIYILMAARLAQLYPELNNekkkkeaaKKFTELSRFKGADLKGLQYQPPFGYFESTRATGSFRVITGSFVTEESGTGIVHCAPAFGEEDYNVCMAHGVVrkgeKLVCPLDANGRFTDEVPEFQGRFVKDADKDIIKL-------LKEKGRVVRADPIRHSYPFCWRSDTPLIYRAVPGTFIHVEKIRDRLMANNNETYWVPSFVqEKRFHNWLESARDWAVSRNRFWGTPIPMWVSDDGEETVVIGSIAELEE---RTGRK--ITDLHREFIDDITLPSTMGkGTLKRVDEVFDCWFESGSMPYAQQHYPFENkEVFDKSFPADFIAEGIDQTRGWFYTLMVLSTALFDKPAFKNLICNGLVLAEDGQKMSKRKQNYPKPELIIDTYGADALRLYLINSpvVRAADLCFKEAGVKQNLKDIFLPWYHAYRLFVQSartMLLQTEVAfaPQPAVALASSNTMDRWILAAANGLVAFMRTEMEAYRLYTVVPRLVDLVEQ-LTNWYIRMNKERFSGERGEACRKASLCTLYEVLMMLCRMMAPLTPFFCELVYRNLARASdeLPESVHFMMIPEVNTAAIDEQIIADVNLMQQVIERGRTVRDRNNLSMRTPLPTATFVHSNAAAL 871
                 68999******************************************************************************************************************************************************************************************6.99***************877666..44468*******************************999999998888888766555455566678999*******************************************************************888889*******************************96.......************************************************************9***********************************************8...78976..799**********************************************98899**********************************************************************************988899*************************99865111445543323367789999*************************************88877.*******************9999*********************************98866789************************************************9999998887766 PP

>> TIGR00422  valS: valine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  130.0   0.0   2.5e-41   1.7e-38       2     235 ..       9     250 ..       8     257 .. 0.92
   2 !  280.5   0.0   7.9e-87   5.4e-84     255     806 ..     323     912 ..     318     956 .. 0.87
   3 ?   -1.2   0.1      0.12        79     727     779 ..     994    1046 ..     985    1088 .. 0.81

  Alignments for each domain:
  == domain 1    score: 130.0 bits;  conditional E-value: 2.5e-41
   TIGR00422   2 ekkYdpkevekklyekweesgvfkpdedeek..esfiiviPPPnvTGslHiGHalevslqDiliRykrmkgknvlflpGlDhagiatqvvvEkklkae.gktkedlgreefvekilewkeesgetikeqlkrLGvsldwsrerfTldeelskavkeaFvrlyeeglIyrgkrlvnwdpkletaisdlEv..eykevkgklyyikyklangs..gkd.klvvATTRPEtllgdtavaVhPeDe 235
                 ++++ + e e+++ ++wee+++fk +  +++  + ++    PP+ TG  H GH l  ++ Di+ Ry    g+ v    G+D++g++++  ++kkl+++ + +   +g +++  ++     ++++  + ++kr+G  +d+++++ T++  ++++v  +F++l+++gl+yrg +++ ++  ++t +s+ Ev  +ykev+      +++l +gs   k   lv  TT P tl +  a+ V+Pe +
  MMETSP1137-20121227|1348_1   9 PERFSFPENEEEVLKWWEEHDTFKESIRRSEgkPYYSFYDGPPFATGLPHYGHILAGTIKDIVCRYAHQTGHCVQRRFGWDCHGLPVEYEIDKKLNITgRDDVLKMGVDKYNAECRAIVMRYSKEWEATVKRVGRWIDFENDYKTMNITFMESVWWVFKQLHDKGLVYRGFKVMPYSCPCSTPLSNFEVqqNYKEVDDPSVVCAFPLLEGSgrAKGtALVAWTTTPWTLPSNLALCVNPEKD 250
                 6789999*****************987766542559999***********************************************************6666778999*********************************************************************************8889**************998844333367777*****************965 PP

  == domain 2    score: 280.5 bits;  conditional E-value: 7.9e-87
   TIGR00422 255 piiaDeevdkefGtGvvkvtpahDknDyevgkrhkl.....elinildedgklneeageyqglerfearkkvvedlkeegllvkieplkqnvgtceRsktvvEpllskQWfVkvekLadkaleaaekegeikfvPkrf.ekeylsWleelkdWcISRQliwghriPvwyeketgevvvakeeaeekektklgs...................keleqdeDVLDTWfsSslwplstlgWpeek.kdlkkfyptsllvtgfDIiffWvarmillslaltgqvPfkevlihglvrdeqgrKmSKSlgNvidPldliekyGaDalRftlaal.vaaGrDinldlkkveaark.FlnKlwnasrfvlmnledk.........keleegeeklsladrwilsklnelikevrealdkyrfaeaakalyeFiWndfcdwyiElvKkelyeee.eeekkeakstlaivLdkllrllhpfiPflteeiyqklkek....adsimlasyPeveeelvdekaekefelvkeiikevRnlkaesnialnaklevllkleeaeeeaerlkksaedlkklikleevevvsekeeeeeavakvvpevev 806
                 ++i+ + v +e GtG+v ++pa  ++Dy+v   h +     +l+  ld +g++++e+ e+qg  +++a k +++ lke+g +v   p++++ ++c+Rs+t++        f++vek+ d++++  +   e  +vP+ + ek++++Wle+ +dW +SR ++wg++iP w +++  e vv  + ae +e+t  +                     +l++ ++V D Wf+S+ +p     +p e+ + + k +p++ + +g D  + W   +++ls+al  +  fk+++++glv  e+g+KmSK + N  +P+ +i+ yGaDalR++l+++ v+   D+ +++  v+++ k      + a r+ ++    +          + +    +++ +drwil+  n l++ +r +++ yr+ +++ +l++   +++ +wyi + K+++ +e  e+ +k+   tl+ vL  l r+++p++Pf+ e +y++l+++     +s++++  Pev+++ +de++ ++++l+ ++i+  R+++  +n+ + ++l +++  +++  + ++++k  +++ + +++ +v v   ++  +++  k  p+ ++
  MMETSP1137-20121227|1348_1 323 RVITGSFVTEESGTGIVHCAPAFGEEDYNVCMAHGVvrkgeKLVCPLDANGRFTDEVPEFQGRFVKDADKDIIKLLKEKGRVVRADPIRHSYPFCWRSDTPLIYRAVPGTFIHVEKIRDRLMANNN---ETYWVPSFVqEKRFHNWLESARDWAVSRNRFWGTPIPMWVSDDGEETVVIGSIAELEERTGRKItdlhrefidditlpstmgkGTLKRVDEVFDCWFESGSMPYAQQHYPFENkEVFDKSFPADFIAEGIDQTRGWFYTLMVLSTALFDKPAFKNLICNGLVLAEDGQKMSKRKQNYPKPELIIDTYGADALRLYLINSpVVRAADLCFKEAGVKQNLKdIFLPWYHAYRLFVQSARTMllqtevafaPQPAVALASSNTMDRWILAAANGLVAFMRTEMEAYRLYTVVPRLVDL-VEQLTNWYIRMNKERFSGERgEACRKASLCTLYEVLMMLCRMMAPLTPFFCELVYRNLARAsdelPESVHFMMIPEVNTAAIDEQIIADVNLMQQVIERGRTVRDRNNLSMRTPLPTATFVHSNAAALASIDKLSAYVMEELNVRSVVVRDVADVRDMVTLKCLPNHKK 912
                 79999*************************99998744443456679*******************************************************99999*********9999887766...69****987267899*************************777666666666666666553222345677788888888888569*************************6664889**********************99******************************************************998735599*********99987633334455777666655555554444455444445667899**********************************9.599*************99885677788889****************************999888889************************************************998888888789999***************999988877766666666666555 PP

  == domain 3    score: -1.2 bits;  conditional E-value: 0.12
   TIGR00422  727 felvkeiikevRnlkaesnialnaklevllkleeaeeeaerlkksaedlkkli 779 
                   +++ e+ ++v ++++e+++ ++ +le++ +  e    a+ lk++a+++++ +
  MMETSP1137-20121227|1348_1  994 EAMAREVCAKVQKMRKEAQLRKEDELEISYSCAEGSVLAKVLKSQASYVAGRL 1046
                  457789999**********************9999999999999999998755 PP

>> TIGR00395  leuS_arch: leucine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.1   0.1     2e-24   1.4e-21       5     317 ..      19     351 ..      16     366 .. 0.83
   2 !   54.8   0.0   1.3e-18   9.1e-16     387     814 ..     373     844 ..     370     900 .. 0.70

  Alignments for each domain:
  == domain 1    score: 74.1 bits;  conditional E-value: 2e-24
   TIGR00395   5 kkyqkrWeeekifeadpddre.kffltv..ayPylnGvlhaGhlrtftivevvarfermkgknvLfplgfhvtGtPilglaekikrrdektikvytevhavPkeellkladpekiveyfsreaesalkslGysidWrrefkttdevydrfieWqlrkLkelGlikkGehpvrycpkdenpvedhdllsGegvtiveyilikfkledga.....lylvaatlrPetvyGvtnvfvnPeieyviv..evgdekfivskea....veklsyqklk......lkvieevkgkqligkkvkaPvvgke.......vpiLPaefvdaekatGvvlsvPahaPadyi 317
                 +   k Wee+  f+      e k + +     P+  G  h Gh+ + ti ++v r+    g+ v   +g+ + G P+      i ++ + t++  ++v ++  ++    a+ + iv  +s+e e ++k++G  id+  ++kt + ++ + + W +++L+++Gl+ +G + + y+  +  p  + ++++  +      ++  f l++g+       lva t  P t+    ++ vnPe++yv +  e+ +  +i+  +     + +l+ +k+k      +  +  +kg +l g + + P  + e        +++  +fv+ e +tG+v + Pa   +dy 
  MMETSP1137-20121227|1348_1  19 EEVLKWWEEHDTFKESIRRSEgKPYYSFydGPPFATGLPHYGHILAGTIKDIVCRYAHQTGHCVQRRFGWDCHGLPV---EYEIDKKLNITGR--DDVLKMGVDKY--NAECRAIVMRYSKEWEATVKRVGRWIDFENDYKTMNITFMESVWWVFKQLHDKGLVYRGFKVMPYSCPCSTPLSNFEVQQNYKEVDDPSVVCAFPLLEGSgrakgTALVAWTTTPWTLPSNLALCVNPEKDYVEIrdEASGTIYILMAARlaqlYPELNNEKKKkeaakkFTELSRFKGADLKGLQYQPPFGYFEstratgsFRVITGSFVTEESGTGIVHCAPAFGEEDYN 351
                 556688999999999877666665555422569*******************************************8...4677777776665..55555555543..378999**************************************************************************999999999999****9999999999***************************87324555556654333012245666666666777667778899*********999976544222223379***********************99995 PP

  == domain 2    score: 54.8 bits;  conditional E-value: 1.3e-18
   TIGR00395 387 GvlienildykGikveeakekvkedlidkGladvyyefsekkvic.rcGdkCvvkvledqWflkysdeeWkekalkclekmrlipeevke.afeekidWlkdkavarrkGLGtrlPwdekyliesLsdstiyqayytiakllnkdelkae.....................qltdelfdyifldkddv..ketkipleileklreefeyfyPldlrisakdLipnhLtfyifthvaifPeefWPrgivvnGyvlle.gkklskskGnlltlkeavekfGadvarlylldaael.vedadfkeseveaakkrle..r...lkefaeeiakksd............levg.eelsfldrwllsrlnkaikevkealenlelrkavkaalfelkkdvdyyrrrsgenvkd............vlaevleaiikLlaPfaPhlaeelyeevGkeg.....fvseakfPevseeavdkevekaeeylrnlvrdik 814
                 G +++++++++G  v++a + + + l++kG          +   c r+ ++ + + + +  f++   e+ +++ +   ++   +p  v+e  f++ ++  +d+av+r +  Gt +P    ++ +   ++ +  +   ia+l +++  k                       +  de+fd  f     +   + + p     + +e f   +P d+   + d     +   +   +a+f +  + + +  nG vl e g+k+sk k n    + +++ +Gad+ rlyl+++  +   d  fke  v++  k ++  +   ++ f++                     v+    +++drw+l   n ++  ++ ++e ++l   v  ++  +++  ++y r  +e+                l evl    +++aP++P+++e +y+++ + +     +v     Pev+  a+d+++ +  ++++++++  +
  MMETSP1137-20121227|1348_1 373 GRFTDEVPEFQGRFVKDADKDIIKLLKEKGRVVRADPIRHSYPFCwRSDTPLIYRAVPGT-FIH--VEKIRDRLMANNNETYWVPSFVQEkRFHNWLESARDWAVSRNRFWGTPIPM---WVSDDGEETVVIGS---IAELEERTGRKITdlhrefidditlpstmgkgtlKRVDEVFDCWFESG-SMpyAQQHYPF----ENKEVFDKSFPADFIAEGIDQTRGWFYTLMVLSTALFDKPAF-KNLICNGLVLAEdGQKMSKRKQNYPKPELIIDTYGADALRLYLINSPVVrAADLCFKEAGVKQNLKDIFlpWyhaYRLFVQSAR---TmllqtevafapqPAVAlASSNTMDRWILAAANGLVAFMRTEMEAYRLYTVVPRLVDLVEQLTNWYIRMNKERFSGergeacrkaslcTLYEVLMMLCRMMAPLTPFFCELVYRNLARASdelpeSVHFMMIPEVNTAAIDEQIIADVNLMQQVIERGR 844
                 556667777777777777777777777777665555555444444377777777766654.444..35666666666677777888777526************************6...55554444444333...444433333333300011222222233344444444556666555443.33112222222....3467799999**********99988888888899***99887.778899999875489****************************99875415788888888888888775333111333333322...2444545666655233346789**************************9999555544555679**99988887766778899999988999**********************995543223337888999*****************9999987544 PP

>> TIGR00396  leuS_bact: leucine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.0   0.3   1.1e-14   7.3e-12       6     168 ..      17     198 ..      12     204 .. 0.72
   2 ?    0.9   0.0     0.029        20     317     400 ..     324     401 ..     319     407 .. 0.65
   3 ?    0.2   0.0     0.046        32     169     220 ..     412     465 ..     392     469 .. 0.80
   4 !   48.0   0.1   1.6e-16   1.1e-13     412     767 ..     470     810 ..     458     855 .. 0.71

  Alignments for each domain:
  == domain 1    score: 42.0 bits;  conditional E-value: 1.1e-14
   TIGR00396   6 ieekwqqkwkekkvkkveedsekkk.yY.iLsmfPYPsgalHlGHvrnYtitDvlsRykrlkgynvlhPiGfDaFGlPaenaaiergta...Pakwteeniakmkkq...............lqalgfsydwdrelattdpeYykftqwiFlelfekgLaykkeaevnwcpedktvLaneevi 168
                  ee + + w+e++++k    +++ k yY   +  P+  g  H GH+ + ti D++ Ry ++ g+ v + +G+D  GlP e + i+++ +    ++  +  ++k++++               ++ +g  +d++ + +t++  +     w+F +l++kgL+y+    + +    +t L n ev 
  MMETSP1137-20121227|1348_1  17 NEEEVLKWWEEHDTFKESIRRSEGKpYYsFYDGPPFATGLPHYGHILAGTIKDIVCRYAHQTGHCVQRRFGWDCHGLPVE-YEIDKKLNitgRDDVLKMGVDKYNAEcraivmryskeweatVKRVGRWIDFENDYKTMNITFMESVWWVFKQLHDKGLVYRGFKVMPYSCPCSTPLSNFEVQ 198
                 58899999******99987755555144246788999999***************************************9.5566554311123444455555555500000000000111145555556677777888888888889**************988888888889999998885 PP

  == domain 2    score: 0.9 bits;  conditional E-value: 0.029
   TIGR00396 317 iyvanyvlaeYGtgavmgvpahderDfeFakkykl..kikevikkaekdlkeealteegvlvnsgefsglkseeakekiiklleke 400
                 +  +++v +e Gtg v   pa  e D++    + +  k ++ +++ + +     +t+     +  ef+g   + a ++iikll+++
  MMETSP1137-20121227|1348_1 324 VITGSFVTEESGTGIVHCAPAFGEEDYNVCMAHGVvrKGEKLVCPLDAN---GRFTD-----EVPEFQGRFVKDADKDIIKLLKEK 401
                 56689**********************9765544311223334433333...11222.....225666777777777777777665 PP

  == domain 3    score: 0.2 bits;  conditional E-value: 0.046
   TIGR00396 169 dsdGrseRgdasvekkelkqwvlkitkyaekLledLeeLeW.pesvkemq.rnW 220
                  s   ++R+d++ + + ++  ++ + k  ++L+ + +e  W p+ v+e   +nW
  MMETSP1137-20121227|1348_1 412 HSYPFCWRSDTPLIYRAVPGTFIHVEKIRDRLMANNNETYWvPSFVQEKRfHNW 465
                 56668******************************9999984666665432566 PP

  == domain 4    score: 48.0 bits;  conditional E-value: 1.6e-16
   TIGR00396 412 rDWlvsRqRYWGePiPiihledgnavpvpeedLPvkLPeleeldgeGvesPlskikewvk.vkkpsl.gk.kakretdtmdtfidssWYylryldpknkekaldkeklekylPvDlYiGGieHavlHLLYaRFfhkllrdlglvstkePfkkLltqGmvlgfvykengkvpadellekdekvkdkedkelvvvslekmskskkngidPqeivkkyGaDalRlyilFasPi..eksleWdesgleGaeR..fld..rvynlvkeilsekea........ktelkeealeeaekelrrevhkalkkvtedlekkeslntviselmkllnallkakk..................e.elllealkalvtvlspiaPhlaeelaeklgeeeseikq 767
                 rDW vsR R+WG+PiP+   +dg+ + v          + +el+ + +++    ++e+++ ++ ps+ gk + kr  + +d + +s    + y++   +  +++ke ++k +P D    Gi+ +        +f  l+    ++ +k  fk+L++ G+vl+    e+g+                           kmsk k+n  +P+ i++ yGaDalRly++ +sP+  +++l ++e+g++   +  fl   + y+l+ +   +           ++++   + ++ ++ +  + +  ++ +  ++e  + l tv+  l+ l+ +l++                     +   l e l  l ++++p++P+ +e + ++l + ++e+ +
  MMETSP1137-20121227|1348_1 470 RDWAVSRNRFWGTPIPMWVSDDGEETVVI--------GSIAELEERTGRKITDLHREFIDdITLPSTmGKgTLKRVDEVFDCWFESGS--MPYAQQ--HYPFENKEVFDKSFPADFIAEGIDQTR-----G-WFYTLMVLSTALFDKPAFKNLICNGLVLA----EDGQ---------------------------KMSKRKQNYPKPELIIDTYGADALRLYLI-NSPVvrAADLCFKEAGVKQNLKdiFLPwyHAYRLFVQSARTMLLqtevafapQPAVALASSNTMDRWILAAANGLVAFMRTEMEAYR-LYTVVPRLVDLVEQLTNWYIrmnkerfsgergeacrkaSlCTLYEVLMMLCRMMAPLTPFFCELVYRNLARASDELPE 810
                 9********************99988776........334444443334444555666632555544133133666778888888863..455544..45578999****************973.....3.33445555556667888************....8888...........................***************************76.678633578999999998754433664225667776654433335666777788888899999999999999999999999999988.999999988877776653322334889999999887543345667888888999999999999888888765544432 PP

>> TIGR00398  metG: methionine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.0   0.4     9e-09   6.2e-06       8     139 ..      51     201 ..      49     212 .. 0.74
   2 !   12.8   0.0   1.2e-05    0.0079     160     242 ..     408     486 ..     385     493 .. 0.76
   3 !   27.4   0.0   4.3e-10   2.9e-07     309     490 ..     598     790 ..     583     809 .. 0.75

  Alignments for each domain:
  == domain 1    score: 23.0 bits;  conditional E-value: 9e-09
   TIGR00398   8 yYangkpHlGhllttilaDvlarykrlrGeevlfvtgtDehGtkielkAe.segltP................kelvdklaeefkklfklln..isfdrFirTtdeehkeivqkifekllenGyiyekeikglYcvecesflpdryvegec 139
                 ++a g pH Gh+l   + D++ ry ++ G+ v    g D+hG ++e + + + ++t                 +++v ++++e++   k ++  i+f++  +T +    e v  +f++l ++G++y +     Y+  c++ l + +v+++ 
  MMETSP1137-20121227|1348_1  51 PFATGLPHYGHILAGTIKDIVCRYAHQTGHCVQRRFGWDCHGLPVEYEIDkKLNITGrddvlkmgvdkynaecRAIVMRYSKEWEATVKRVGrwIDFENDYKTMNITFMESVWWVFKQLHDKGLVYRGFKVMPYSCPCSTPLSNFEVQQNY 201
                 68999********99999**************************99875413455531111100000000000444455555555555555577999999****************************99999*99999988888666554 PP

  == domain 2    score: 12.8 bits;  conditional E-value: 1.2e-05
   TIGR00398 160 ePlelieprcvvskakpelkeeehyFfrlskfekkleelikknpeskklasevknvlenflkegLkdlaitRdlvewGipvPk 242
                 +P++   p c  s++  +++     F +++k+++ l + +++  +   ++   ++  +n+l++  +d+a++R+ + wG+p+P 
  MMETSP1137-20121227|1348_1 408 DPIRHSYPFCWRSDTPLIYRAVPGTFIHVEKIRDRLMANNNE--TYWVPSFVQEKRFHNWLES-ARDWAVSRNRF-WGTPIPM 486
                 566666677777777777788888888888888888776653..33333333334459****9.9**********.******6 PP

  == domain 3    score: 27.4 bits;  conditional E-value: 4.3e-10
   TIGR00398 309 lklpkqlvahgyltve.gkkmSkSkgnvvdpedllarygadilRYyllkevp.lekDldfsledfvervNaelvnklgNllnRtlgfikkyf..egklksvkea.......seedekllkkieealekidealekfefkkaleeilklvse.gnklideekPwelakee.ekekellavllelirvlsillkpil 490
                  + +k+l+  g ++ e g+kmSk k n  +pe +++ ygad+lR yl+++   +  Dl f+++  ++ + +++   +  +++R++   ++ +  + +++++ +        +  d+ +l+ ++  +  + +++e ++++  +  ++ lv++ +n +i  +k     +   +  k+ l +l+e++ +l  +++p+ 
  MMETSP1137-20121227|1348_1 598 KPAFKNLICNGLVLAEdGQKMSKRKQNYPKPELIIDTYGADALRLYLINSPVvRAADLCFKEAGVKQNL-KDIFLPWY-HAYRLFVQSARTMllQTEVAFAPQPavalassNTMDRWILAAANGLVAFMRTEMEAYRLYTVVPRLVDLVEQlTNWYIRMNKERFSGERGeACRKASLCTLYEVLMMLCRMMAPLT 790
                 567899*****999988******************************99865599***********999.99988885.78888776666551144444443337888887777888999999999999999999999999999999998636889987764333333324444444445555555555555544 PP

>> TIGR00435  cysS: cysteine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.0   4.6e-06    0.0031     239     296 ..     590     648 ..     570     690 .. 0.83

  Alignments for each domain:
  == domain 1    score: 14.5 bits;  conditional E-value: 4.6e-06
   TIGR00435 239 aqsealfdkqlvkyflHngflki.egeKmSKSlgNfitikdllkkfdpralRllllsvh 296
                  +s+alfdk+  k  + ng +   +g+KmSK  +N+   + +++++ + alRl+l+++ 
  MMETSP1137-20121227|1348_1 590 VLSTALFDKPAFKNLICNGLVLAeDGQKMSKRKQNYPKPELIIDTYGADALRLYLINSP 648
                 6799***************8765279***************************998764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1173 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       120  (0.029254); expected 82.0 (0.02)
Passed bias filter:                      104  (0.0253535); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 1.11u 0.14s 00:00:01.25 Elapsed: 00:00:01.31
# Mc/sec: 1181.86
//
Query:       MMETSP1137-20121227|1349_1  [L=230]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (230 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        65  (0.0158459); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.18s 00:00:00.39 Elapsed: 00:00:00.35
# Mc/sec: 867.36
//
Query:       MMETSP1137-20121227|1350_1  [L=145]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.7e-54  181.2   1.0    1.9e-54  181.0   0.7    1.0  1  TIGR00982 S23_S12_E_A: ribosomal protein S23 (S12)
      5e-11   40.4   0.3    7.5e-11   39.9   0.2    1.3  1  TIGR00981 rpsL_bact: ribosomal protein S12


Domain annotation for each model (and alignments):
>> TIGR00982  S23_S12_E_A: ribosomal protein S23 (S12)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  181.0   0.7   9.1e-58   1.9e-54       1     138 [.       8     144 ..       8     145 .] 0.98

  Alignments for each domain:
  == domain 1    score: 181.0 bits;  conditional E-value: 9.1e-58
   TIGR00982   1 glfaarklkekrkkfrwsdrrykrrvlrlkekadplegapqargivlekvgveakqpnsalrkavrvqlikngkvvtafvpgdgainfidehdevivegiggpkgrsmgdipgvrykvvkvnnvslkelvkgkkekpr 138
                 g+ aarkl++ r+  rw ++ryk+  l  + k +p+ g+  ++givlek+g+eakqpnsa+rk+vr qlikngk+++afvp+dg++nfide dev++ g  g+kg+++gdipgvr+kvvkv +v+l +l++ kkekpr
  MMETSP1137-20121227|1350_1   8 GINAARKLRTVRRENRWAQKRYKKAHLGTQFKCNPFGGSSHCKGIVLEKIGIEAKQPNSAIRKCVRAQLIKNGKKIAAFVPRDGCLNFIDENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVALLALYREKKEKPR 144
                 6779***********************************************************************************************8.599********************************97 PP

>> TIGR00981  rpsL_bact: ribosomal protein S12
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.9   0.2   3.6e-14   7.5e-11      20     101 ..      30     128 ..      11     144 .. 0.73

  Alignments for each domain:
  == domain 1    score: 39.9 bits;  conditional E-value: 3.6e-14
   TIGR00981  20 kspalek.........sPqkrGvctrvktvtPkkPnsalrkvarvrl.tngvevtayipGeg..hnlqehsvvlvrG.Gr....vkdlPgvryhivrGa 101
                 k + l +         s + +G+++    +  k+Pnsa+rk +r +l  ng +++a++p +g    ++e + vl+ G Gr    v d+Pgvr+++v+ +
  MMETSP1137-20121227|1350_1  30 KKAHLGTqfkcnpfggSSHCKGIVLEKIGIEAKQPNSAIRKCVRAQLiKNGKKIAAFVPRDGclNFIDENDEVLIAGfGRkghaVGDIPGVRFKVVKVS 128
                 333333334445555577889************************984699********877325689*******66533333499*********9854 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (145 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        76  (0.0185275); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.20u 0.16s 00:00:00.36 Elapsed: 00:00:00.32
# Mc/sec: 598.08
//
Query:       MMETSP1137-20121227|1351_1  [L=526]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (526 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       163  (0.0397367); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.14s 00:00:00.51 Elapsed: 00:00:00.48
# Mc/sec: 1446.38
//
Query:       MMETSP1137-20121227|1352_1  [L=61]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        64  (0.0156021); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.14s 00:00:00.28 Elapsed: 00:00:00.24
# Mc/sec: 335.47
//
Query:       MMETSP1137-20121227|1353_1  [L=540]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.5e-08   30.0   0.0    3.2e-08   29.7   0.0    1.1  1  TIGR03903 TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
    1.7e-05   22.2   0.0    2.7e-05   21.6   0.0    1.2  1  TIGR03724 arch_bud32: Kae1-associated kinase Bud32


Domain annotation for each model (and alignments):
>> TIGR03903  TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.7   0.0   1.6e-11   3.2e-08      15     117 ..     262     369 ..     249     422 .. 0.80

  Alignments for each domain:
  == domain 1    score: 29.7 bits;  conditional E-value: 1.6e-11
   TIGR03903  15 aaeeerlvaRFrReialCarL.shPnivaLlDsGeaedgllFavFeyveGrtlrevLaad.GaLpaaetg....rLmlqvLDalaaahdaGvvhRDLkPqnimvsaadv 117
                 a   + ++a + Re++l +++ +hP++ +     + + ++ +   e+ eG tlr+++ a+  aL + e      +++  v  +l + h + v+h DLkP+ni++s  + 
  MMETSP1137-20121227|1353_1 262 ALHSKSQRAEYLREVTLANNMpEHPHVAQYYRAWQ-DSNYFYVQMELCEGGTLRHLMEAEkAALMSLESElrvwEIVRHVSRGLQHIHVHAVMHCDLKPDNILISRDGS 369
                 23778899*********999868***999876655.55588889*************9872567666543212267889999***********************8875 PP

>> TIGR03724  arch_bud32: Kae1-associated kinase Bud32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.6   0.0   1.3e-08   2.7e-05      69     169 ..     298     411 ..     266     423 .. 0.82

  Alignments for each domain:
  == domain 1    score: 21.6 bits;  conditional E-value: 1.3e-08
   TIGR03724  69 peekkivmeyiegkklkdlleekel............ellkevGelvgklHkagivhgDlttsNiivkddkly.liDfGLgkkskevedkavDlhvlkrslestheelaeelie 169
                  + + + me  eg +l++l+e+++             e++++v + + ++H + ++h Dl + Ni+++ d  + + D+G +   k   d+  D   l r l    +  a ++++
  MMETSP1137-20121227|1353_1 298 SNYFYVQMELCEGGTLRHLMEAEKAalmsleselrvwEIVRHVSRGLQHIHVHAVMHCDLKPDNILISRDGSFkIGDLGQAIAIKAWDDQEGDACYLSRDLLESRPSAAADIFS 411
                 4556788999999999999999887899999999999*****************************975555516699999999999998888888877665555554666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (540 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        85  (0.0207216); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.16s 00:00:00.54 Elapsed: 00:00:00.56
# Mc/sec: 1272.75
//
Query:       MMETSP1137-20121227|1354_1  [L=426]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (426 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        97  (0.023647); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.15s 00:00:00.46 Elapsed: 00:00:00.31
# Mc/sec: 1813.79
//
Query:       MMETSP1137-20121227|1355_1  [L=413]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (413 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       125  (0.0304729); expected 82.0 (0.02)
Passed bias filter:                      112  (0.0273038); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.16s 00:00:00.48 Elapsed: 00:00:00.56
# Mc/sec: 956.34
//
Query:       MMETSP1137-20121227|1356_1  [L=298]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      4e-09   32.5   0.0    5.1e-09   32.2   0.0    1.0  1  TIGR01405 polC_Gram_pos: DNA polymerase III, alpha subunit, Gram-positive type
    2.4e-07   27.2   0.0      3e-07   26.9   0.0    1.1  1  TIGR01407 dinG_rel: putative DnaQ family exonuclease/DinG family helicase
     0.0015   16.1   0.0     0.0032   14.9   0.0    1.7  1  TIGR01406 dnaQ_proteo: DNA polymerase III, epsilon subunit


Domain annotation for each model (and alignments):
>> TIGR01405  polC_Gram_pos: DNA polymerase III, alpha subunit, Gram-positive type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.2   0.0   3.7e-12   5.1e-09     192     352 ..      96     278 ..      85     287 .. 0.77

  Alignments for each domain:
  == domain 1    score: 32.2 bits;  conditional E-value: 3.7e-12
   TIGR01405 192 vvfDiettG..ls.pkldeiielaavkv..kngkiiekfelfikpe..eklsekvteltgitdemlenakeleevleklkeflkdavl.....va.hnasf......Dl.gflktkfekvnleelenpviDtLelaralnpeyksyrLgeiakklevelee....ahradyDaealakvfkvlve 352
                 +v+D+e t   +s + + eiiel  v v  ++ ++  +f++++kp+  + ls + t ltgi + +++ a +le++l +l+ +l+++ +     va  n +f      Dl +fl+++ e+ ++ +   ++ D     ++l++++ + r  +i k le++  +     h  ++D++ +a++ +++ +
  MMETSP1137-20121227|1356_1  96 CVLDVEATCeeFSrNYVHEIIELPVVLVdlEKSRVSSEFHTYVKPTanKTLSPFCTRLTGIRQSQVDAAPTLETALVQLEGWLEAQGMlldapVAeRNFAFaadgpwDLkNFLDAECERKGIRK--GAYFDKWVNLKQLFSDFYRVRSCKIHKMLEFQGMTfegrLHSGIDDSRNIARIAIKMAQ 278
                 89*****97445524569****99876522788***********963378*********************************98755234444434677744222233478999988888865..57889888888888888888888888888776554445799999999999999998876 PP

>> TIGR01407  dinG_rel: putative DnaQ family exonuclease/DinG family helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.9   0.0   2.2e-10     3e-07       3      71 ..      96     171 ..      93     181 .. 0.83

  Alignments for each domain:
  == domain 1    score: 26.9 bits;  conditional E-value: 2.2e-10
   TIGR01407   3 aVvDlEtTgtssse...dkIIqiGivlv..edgeivetfatdvnp..neeippfIqeLTgisdeqlkqAPeFsqva 71 
                  V+D+E+T ++ s     +II++ +vlv  e  ++  +f+t v+p  n+++ pf   LTgi + q+  AP+ +   
  MMETSP1137-20121227|1356_1  96 CVLDVEATCEEFSRnyvHEIIELPVVLVdlEKSRVSSEFHTYVKPtaNKTLSPFCTRLTGIRQSQVDAAPTLETAL 171
                 599*****99988745569********94445668899******966799********************998765 PP

>> TIGR01406  dnaQ_proteo: DNA polymerase III, epsilon subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   2.3e-06    0.0032       3      75 ..      96     173 ..      94     279 .. 0.84

  Alignments for each domain:
  == domain 1    score: 14.9 bits;  conditional E-value: 2.3e-06
   TIGR01406   3 iiLDtettG..ldakegdRiveigavel.vdrkltgkefhvYvkPerd..ieaeaakvhGltseflkdkPkfkeiade 75 
                  +LD e t   + ++  + i+e+  v + +++ +  +efh+YvkP  +  +    ++++G+ +  +   P+ ++   +
  MMETSP1137-20121227|1356_1  96 CVLDVEATCeeFSRNYVHEIIELPVVLVdLEKSRVSSEFHTYVKPTANktLSPFCTRLTGIRQSQVDAAPTLETALVQ 173
                 59*****9733555668******9886656788999*********76511666789******9999999988776555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (298 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        72  (0.0175524); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.28u 0.16s 00:00:00.44 Elapsed: 00:00:00.31
# Mc/sec: 1268.80
//
Query:       MMETSP1137-20121227|1357_1  [L=86]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (86 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        48  (0.0117016); expected 82.0 (0.02)
Passed bias filter:                       40  (0.00975134); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.28
# Mc/sec: 391.42
//
Query:       MMETSP1137-20121227|1358_1  [L=400]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-13   48.4   0.0    3.6e-07   27.3   0.0    2.3  2  TIGR02037 degP_htrA_DO: peptidase Do
    4.9e-10   36.8   0.0    5.9e-05   20.1   0.0    3.0  3  TIGR00225 prc: C-terminal processing peptidase
    6.4e-09   33.2   0.0    0.00099   16.2   0.0    2.2  2  TIGR02038 protease_degS: periplasmic serine peptidase DegS
    7.6e-07   26.1   0.0      0.057   10.1   0.0    3.0  3  TIGR00054 TIGR00054: RIP metalloprotease RseP
     0.0041   12.9   0.0       0.32    6.7   0.0    2.1  2  TIGR03900 prc_long_Delta: putative carboxyl-terminal-processing protease, deltaproteobacterial
  ------ inclusion threshold ------
      0.016   12.0   0.0        2.2    5.0   0.0    2.2  2  TIGR02860 spore_IV_B: stage IV sporulation protein B


Domain annotation for each model (and alignments):
>> TIGR02037  degP_htrA_DO: peptidase Do
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.3   0.0   5.3e-10   3.6e-07     257     296 ..      45      84 ..      31      96 .. 0.85
   2 !   18.6   0.0   2.3e-07   0.00016     262     420 ..     153     300 ..     139     314 .. 0.71

  Alignments for each domain:
  == domain 1    score: 27.3 bits;  conditional E-value: 5.3e-10
   TIGR02037 257 kakGalvaevlkgspAekaGlkaGDvilkvngkkiksaad 296
                 + +Ga+v +v+kgspA++aG++  D+++ +ng+++ + ++
  MMETSP1137-20121227|1358_1  45 HXNGAMVHSVIKGSPAAEAGIQPRDIVTCINGRPVITREA 84 
                 679******************************9976655 PP

  == domain 2    score: 18.6 bits;  conditional E-value: 2.3e-07
   TIGR02037 262 lvaevlkgspAekaGlkaGDvilkvngkkiksaadlreaigtlkpgkkvklkilRkgkekeikvtlkeaeeekasseksekkellglsvadlseeaakkkkskeekkgvvvtkvkkkspaakaglkkgdvilsvnqkevksvaelkkvleeakkkervl 420
                 +  +vl++spA+kaGl a D++l+vng + +s ++    +++++  k+++++  R  + +   ++l++  ++ a+ e+     +    va+l  + +k+      +  +vv++v  +++a   +l++++ +l vn k   + +  +++l++a+ +e+ l
  MMETSP1137-20121227|1358_1 153 VLEAVLPDSPAAKAGLCAYDLLLSVNGVRTESEKHALGLLQDATWPKRITVG--RPQAYHAAALRLQKFWRKMAHVERI--ICTRRSPVAPLGITFCKD-----ITATAVVSEVV-DATACYGKLRPNHAVLFVNGKLCYNSDHAEQLLQNAT-GEVEL 300
                 56789*****************************999999999999987765..6677777777777666666666632..333344567777444442.....33344555555.6778888899999999999998888888888888665.33333 PP

>> TIGR00225  prc: C-terminal processing peptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.0   8.7e-08   5.9e-05      64      97 ..      49      82 ..      39      88 .. 0.89
   2 !   10.0   0.0    0.0001     0.069      62      96 ..     147     184 ..     127     193 .. 0.79
   3 ?    2.9   0.0     0.015        10      53      96 ..     240     283 ..     224     318 .. 0.81

  Alignments for each domain:
  == domain 1    score: 20.1 bits;  conditional E-value: 8.7e-08
   TIGR00225 64 ivivsplegsPAekagikpgDkIikvdgksvagm 97
                 ++ s+++gsPA++agi+p+D ++ ++g++v++ 
  MMETSP1137-20121227|1358_1 49 AMVHSVIKGSPAAEAGIQPRDIVTCINGRPVITR 82
                5799*************************99875 PP

  == domain 2    score: 10.0 bits;  conditional E-value: 0.0001
   TIGR00225  62 d...eivivsplegsPAekagikpgDkIikvdgksvag 96 
                 d     v+ ++l +sPA+kag+ + D +++v+g  + +
  MMETSP1137-20121227|1358_1 147 DwetAPVLEAVLPDSPAAKAGLCAYDLLLSVNGVRTES 184
                 25545567899**********************87765 PP

  == domain 3    score: 2.9 bits;  conditional E-value: 0.015
   TIGR00225  53 iGiqvqmeddeivivsplegsPAekagikpgDkIikvdgksvag 96 
                 +Gi+  ++   + +vs + ++ A   +++p+  ++ v+gk  + 
  MMETSP1137-20121227|1358_1 240 LGITFCKDITATAVVSEVVDATACYGKLRPNHAVLFVNGKLCYN 283
                 7999999999*****************************95433 PP

>> TIGR02038  protease_degS: periplasmic serine peptidase DegS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0   1.4e-06   0.00099     274     317 ..      43      86 ..      32      98 .. 0.87
   2 !   14.8   0.0   3.7e-06    0.0025     281     325 ..     153     197 ..     144     205 .. 0.84

  Alignments for each domain:
  == domain 1    score: 16.2 bits;  conditional E-value: 1.4e-06
   TIGR02038 274 ledlrgivvtevdPngPaaragllvrdvilkldnkevisaeelm 317
                 + + +g +v  v   +Paa+ag+++rd++  +++++vi++e  +
  MMETSP1137-20121227|1358_1  43 VLHXNGAMVHSVIKGSPAAEAGIQPRDIVTCINGRPVITREAAI 86 
                 5578999*******************************998765 PP

  == domain 2    score: 14.8 bits;  conditional E-value: 3.7e-06
   TIGR02038 281 vvtevdPngPaaragllvrdvilkldnkevisaeelmdrvaelrP 325
                 v+  v P++Paa+agl   d++l++++  + s ++ +  + + + 
  MMETSP1137-20121227|1358_1 153 VLEAVLPDSPAAKAGLCAYDLLLSVNGVRTESEKHALGLLQDATW 197
                 667899**********************99999988777766655 PP

>> TIGR00054  TIGR00054: RIP metalloprotease RseP
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.3   0.0   0.00029       0.2     190     236 ..      35      81 ..      21      90 .. 0.85
   2 !   10.1   0.0   8.3e-05     0.057     202     239 ..     150     187 ..     111     203 .. 0.83
   3 !    3.9   0.0    0.0063       4.3     124     179 ..     247     301 ..     238     325 .. 0.83

  Alignments for each domain:
  == domain 1    score: 8.3 bits;  conditional E-value: 0.00029
   TIGR00054 190 eeekelkelgpkielvlsdvvdnspaekaGlkeGDkilkidgeklks 236
                 +   +l+e+   + ++++ v + spa++aG+++ D +  i+g ++  
  MMETSP1137-20121227|1358_1  35 QYARGLQEVLHXNGAMVHSVIKGSPAAEAGIQPRDIVTCINGRPVIT 81 
                 555668888889999**************************988755 PP

  == domain 2    score: 10.1 bits;  conditional E-value: 8.3e-05
   TIGR00054 202 ielvlsdvvdnspaekaGlkeGDkilkidgeklkswrd 239
                   +vl+ v + spa+kaGl + D +l+++g+  +s + 
  MMETSP1137-20121227|1358_1 150 TAPVLEAVLPDSPAAKAGLCAYDLLLSVNGVRTESEKH 187
                 4689**************************99887665 PP

  == domain 3    score: 3.9 bits;  conditional E-value: 0.0063
   TIGR00054 124 nfevkkvieeldknsialeakiedgdeilsvdgkkikdfkdvrkqlaekagevsve 179
                 +++   v++e+  ++ a   k++++  +l v+gk   ++++++++l++++gev + 
  MMETSP1137-20121227|1358_1 247 DITATAVVSEVVDAT-ACYGKLRPNHAVLFVNGKLCYNSDHAEQLLQNATGEVELL 301
                 566778888887774.9999****************************99998765 PP

>> TIGR03900  prc_long_Delta: putative carboxyl-terminal-processing protease, deltaproteobacterial
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.7   0.0   0.00047      0.32     154     181 ..      50      77 ..      39     107 .. 0.86
   2 !    4.4   0.0    0.0023       1.6     158     183 ..     157     182 ..     149     227 .. 0.87

  Alignments for each domain:
  == domain 1    score: 6.7 bits;  conditional E-value: 0.00047
   TIGR03900 154 tVlrvlpetPAaraGlkakDrivkidee 181
                 +V  v++++PAa aG++ +D ++ i+  
  MMETSP1137-20121227|1358_1  50 MVHSVIKGSPAAEAGIQPRDIVTCINGR 77 
                 6788*****************9999865 PP

  == domain 2    score: 4.4 bits;  conditional E-value: 0.0023
   TIGR03900 158 vlpetPAaraGlkakDrivkideest 183
                 vlp++PAa+aGl a D ++ ++   t
  MMETSP1137-20121227|1358_1 157 VLPDSPAAKAGLCAYDLLLSVNGVRT 182
                 89**************9999887666 PP

>> TIGR02860  spore_IV_B: stage IV sporulation protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.0    0.0032       2.2     124     150 ..      58      84 ..      40     115 .. 0.84
   2 ?    4.7   0.0    0.0039       2.7     124     163 ..     161     201 ..     157     218 .. 0.87

  Alignments for each domain:
  == domain 1    score: 5.0 bits;  conditional E-value: 0.0032
   TIGR02860 124 sPaeeagiqvGDlilkvngekikeeed 150
                 sPa+eagiq  D+++ +ng+++ + e 
  MMETSP1137-20121227|1358_1  58 SPAAEAGIQPRDIVTCINGRPVITREA 84 
                 8*******************9876554 PP

  == domain 2    score: 4.7 bits;  conditional E-value: 0.0039
   TIGR02860 124 sPaeeagiqvGDlilkvngekikeeedvaklineag.gekl 163
                 sPa++ag+   Dl+l+vng + ++e++   l+++a   +++
  MMETSP1137-20121227|1358_1 161 SPAAKAGLCAYDLLLSVNGVRTESEKHALGLLQDATwPKRI 201
                 8**************************99999998755554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (400 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        84  (0.0204778); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.35u 0.12s 00:00:00.47 Elapsed: 00:00:00.57
# Mc/sec: 910.27
//
Query:       MMETSP1137-20121227|1359_1  [L=295]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (295 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       132  (0.0321794); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.16s 00:00:00.39 Elapsed: 00:00:00.46
# Mc/sec: 846.45
//
Query:       MMETSP1137-20121227|1361_1  [L=366]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (366 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        98  (0.0238908); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.16s 00:00:00.44 Elapsed: 00:00:00.82
# Mc/sec: 589.12
//
Query:       MMETSP1137-20121227|1362_1  [L=502]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (502 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       226  (0.0550951); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.15s 00:00:00.50 Elapsed: 00:00:00.69
# Mc/sec: 960.27
//
Query:       MMETSP1137-20121227|1363_1  [L=120]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (120 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        43  (0.0104827); expected 82.0 (0.02)
Passed bias filter:                       42  (0.0102389); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.15s 00:00:00.31 Elapsed: 00:00:01.29
# Mc/sec: 122.78
//
Query:       MMETSP1137-20121227|1364_1  [L=418]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (418 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       119  (0.0290102); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.13s 00:00:00.42 Elapsed: 00:00:00.45
# Mc/sec: 1226.03
//
Query:       MMETSP1137-20121227|1365_1  [L=447]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (447 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        90  (0.0219405); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.15s 00:00:00.46 Elapsed: 00:00:00.47
# Mc/sec: 1255.30
//
Query:       MMETSP1137-20121227|1366_1  [L=450]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (450 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        70  (0.0170648); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.13s 00:00:00.44 Elapsed: 00:00:00.45
# Mc/sec: 1319.89
//
Query:       MMETSP1137-20121227|1367_1  [L=164]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (164 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       130  (0.0316919); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.12s 00:00:00.30 Elapsed: 00:00:00.41
# Mc/sec: 527.96
//
Query:       MMETSP1137-20121227|1368_1  [L=79]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (79 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        78  (0.0190151); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.15s 00:00:00.28 Elapsed: 00:00:00.33
# Mc/sec: 315.97
//
Query:       MMETSP1137-20121227|1370_1  [L=690]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (690 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       106  (0.0258411); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.18s 00:00:00.63 Elapsed: 00:00:00.70
# Mc/sec: 1301.04
//
Query:       MMETSP1137-20121227|1371_1  [L=477]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   1.8e-140  466.0   1.6    5.7e-71  237.3   0.4    2.1  2  TIGR01034 metK: methionine adenosyltransferase


Domain annotation for each model (and alignments):
>> TIGR01034  metK: methionine adenosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  237.3   0.4   1.4e-74   5.7e-71       1     193 [.      16     222 ..      16     228 .. 0.93
   2 !  227.8   0.0   1.1e-71   4.4e-68     191     362 ..     245     429 ..     238     449 .. 0.86

  Alignments for each domain:
  == domain 1    score: 237.3 bits;  conditional E-value: 1.4e-74
   TIGR01034   1 lftsesvseGhPdkiadqisdavLdailkqdkkskvacevlvktglvligGeittsayvdieevarkvikdiGyte........aelGfdaktiavleaieeqspdiaqgvekeke.eelgaGdqgimfGyatketeellPlpillahkllkklaelrkegklpfLrpdaksqvtleyednk.....pvkvdtvvlstqhdeeislk 193
                 +f sesv eGhPdk+adq+sdavLda+l qd++skvace+++k+++v+++Geitt+a++d+++++r  +k+iG+++         ++G+  +t+ vl  i++qspdia gv+  k+  ++gaGdqgimfGya +et +++Pl+ l+a kl kkl+++rk+g+  +Lrpd+k+qvt++y+++      p +++tvv+stqh+e +  k
  MMETSP1137-20121227|1371_1  16 MFSSESVNEGHPDKLADQVSDAVLDACLAQDPYSKVACETATKDNMVMVFGEITTQAQLDYDKIVRAEVKKIGFDSfvddlssvDSKGLSCDTCEVLVRINKQSPDIAGGVHVGKSdLDVGAGDQGIMFGYASDETASCMPLTHLMATKLGKKLTDVRKDGTCWWLRPDGKTQVTIQYKQHTdgsvePLSIHTVVISTQHAEPLKAK 222
                 699***********************************************************************86333332223589************************877658**************************************************************988989999***********9987665 PP

  == domain 2    score: 227.8 bits;  conditional E-value: 1.1e-71
   TIGR01034 191 slkelreaiieeiikpvlp.kelld..........ektkilinPtGrfviGGPlgdtGltGrkiivdtyGglarhGGgafsGkdpskvdrsaaylaryiaknlvaaglaervevqlsyaigvaePvsisvetfgtek..kseeellkvvkevfdlrpakiiekLdLlkpiyrktaayGhfgreef 362
                 s++e++e+i +++i ++l+  +l++             +++inP+G+f+iGGP+gd+GltGrkii+dtyGg+++hGGgafsGkdp+kvdrsaay+ r++ak++v+agl++r++vqlsyaigva+P+s+ vet+gte+   +++ ++++vk +fd rp ++ ++L L++p y+ taay hfgre +
  MMETSP1137-20121227|1371_1 245 SMEEMNEEIHDKVIMATLEeIKLKNgksatsiydrATCNLHINPSGKFIIGGPQGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSAAYACRWMAKSVVKAGLCKRALVQLSYAIGVAKPLSLFVETYGTEQgeLTAKAITDIVKMNFDCRPGALARDLCLRQPKYNVTAAYCHFGREPY 429
                 77888888888888888763333331111111101344689**********************************************************************************************973257899**************************************965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (477 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       134  (0.032667); expected 82.0 (0.02)
Passed bias filter:                       97  (0.023647); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.18s 00:00:00.55 Elapsed: 00:00:00.74
# Mc/sec: 850.79
//
Query:       MMETSP1137-20121227|1372_1  [L=297]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (297 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        71  (0.0173086); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.15s 00:00:00.39 Elapsed: 00:00:00.28
# Mc/sec: 1400.03
//
Query:       MMETSP1137-20121227|1373_1  [L=571]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (571 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       186  (0.0453437); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.15s 00:00:00.55 Elapsed: 00:00:00.42
# Mc/sec: 1794.42
//
Query:       MMETSP1137-20121227|1375_1  [L=208]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.6e-21   74.8   0.6    1.9e-21   74.6   0.4    1.1  1  TIGR01347 sucB: dihydrolipoyllysine-residue succinyltransferase, E2 component of oxoglutarate dehydrogenase (succinyl-transferring) complex
    3.8e-19   66.7  10.6    3.8e-19   66.7   7.4    1.8  2  TIGR02927 SucB_Actino: 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase
    5.2e-18   62.7  12.6    8.3e-18   62.1   8.8    1.4  1  TIGR01348 PDHac_trf_long: dihydrolipoyllysine-residue acetyltransferase
    1.4e-12   45.3   1.0    1.8e-12   44.9   0.7    1.2  1  TIGR01349 PDHac_trf_mito: pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase
      5e-07   26.4   0.3    5.7e-07   26.2   0.2    1.1  1  TIGR01108 oadA: oxaloacetate decarboxylase alpha subunit
      1e-05   21.1   0.1    1.2e-05   20.9   0.1    1.0  1  TIGR01235 pyruv_carbox: pyruvate carboxylase
    4.5e-05   19.1   0.1    5.4e-05   18.9   0.0    1.1  1  TIGR02712 urea_carbox: urea carboxylase
    0.00063   16.8   0.0      0.001   16.0   0.0    1.3  1  TIGR00999 8a0102: membrane fusion protein cluster 2 protein
     0.0011   16.8   0.7       0.44    8.5   0.0    2.3  2  TIGR03077 not_gcvH: glycine cleavage protein H-like protein
     0.0044   13.8   0.2       0.76    6.4   0.0    2.1  2  TIGR03794 NHLM_micro_HlyD: NHLM bacteriocin system secretion protein
     0.0046   13.8   0.3       0.19    8.5   0.1    2.2  2  TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit
  ------ inclusion threshold ------
      0.031   12.2   1.3      0.064   11.2   0.6    1.6  2  TIGR00527 gcvH: glycine cleavage system H protein
        3.8    5.8  18.5      0.023   13.0   1.4    2.8  2  TIGR00531 BCCP: acetyl-CoA carboxylase, biotin carboxyl carrier protein


Domain annotation for each model (and alignments):
>> TIGR01347  sucB: dihydrolipoyllysine-residue succinyltransferase, E2 component of oxoglutarate dehydrogenase (succinyl-transferring) complex
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.6   0.4     6e-24   1.9e-21       2     111 ..      93     200 ..      92     208 .] 0.76

  Alignments for each domain:
  == domain 1    score: 74.6 bits;  conditional E-value: 6e-24
   TIGR01347   2 eikvPelaesvteatvaewekkvGdavkkdeliveletDkvslevaseadGvleellekegdtvesgevlaeleessaaaeaasekskeekeekaaakaekakeaaekkk 111
                 e+ +P++++s++e+t+ +  kk Gd v+++e+++e+etDkv++ev+s+++G++++++++egdtve+  +++ l+ +  +++aa+ +s  +++e++a + ++a+++a + +
  MMETSP1137-20121227|1375_1  93 EVPIPSMGDSISEGTILTLLKKEGDYVAQEETVAEVETDKVTVEVKSPEAGTIKDMHVAEGDTVEVSGKFFSLTVGVGEPSAAAPAS--SPSEAPAPSPAPAPSDAXEPA 200
                 7899*******************************************************************9996544333333333..333333444444444433322 PP

>> TIGR02927  SucB_Actino: 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.7      0.21        65     309     370 ..       9      68 ..       1      88 [. 0.69
   2 !   66.7   7.4   1.2e-21   3.8e-19       4     113 ..      93     206 ..      90     208 .] 0.76

  Alignments for each domain:
  == domain 1    score: -0.1 bits;  conditional E-value: 0.21
   TIGR02927 309 eakeaaaaeaaaaapaapaaakkapepekaklrGttqkvnrirqitakktveslqisaqltq 370
                  ++ ++ a    a  a p+a+ ka  p +  l G   +  r+   +++++   +++   l+q
  MMETSP1137-20121227|1375_1   9 MPASTSLAAGLRATVAKPSASVKAFTPLRLMLSGHGARSVRMASTVSRRLNLQMRT--SLAQ 68 
                 23333344444567777888999999999999999999999999999887544444..4433 PP

  == domain 2    score: 66.7 bits;  conditional E-value: 1.2e-21
   TIGR02927   4 svkmpalGesvteGtvtrwlkavGdtvevdepllevstdkvdteipspaaGvlleikaeeddtvevGgvl...ai.iGeegeagsedaeapaepeeepaeepp.keepkkaaeap 113
                  v +p++G+s++eGt+   lk++Gd v  +e + ev tdkv  e+ sp aG + ++++ e dtvev g +   ++ +Ge++ a+ +++ ++ +p++ pa+ p  + ep++aa a 
  MMETSP1137-20121227|1375_1  93 EVPIPSMGDSISEGTILTLLKKEGDYVAQEETVAEVETDKVTVEVKSPEAGTIKDMHVAEGDTVEVSGKFfslTVgVGEPSAAAPASS-PSEAPAPSPAPAPSdAXEPAAAAAAA 206
                 6889**************************************************************9864111334667666644433.44445555555543145666665554 PP

>> TIGR01348  PDHac_trf_long: dihydrolipoyllysine-residue acetyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.1   8.8   2.6e-20   8.3e-18     128     265 ..      65     206 ..       1     208 [] 0.69

  Alignments for each domain:
  == domain 1    score: 62.1 bits;  conditional E-value: 2.6e-20
   TIGR01348 128 tvkageagaaadaakkeaaPaeaqasgvkevkvPdiGd.aekvevievlvkvGdtvsadqslitlesdkaslevPapasGvvkslkvkvGdkvktGdlilvlev...egaapaaaeapakaeaaaaapa.aeaeeaaaapaaa 265
                 +  + +++++    + +    ++  + v ev +P +Gd +++++++++l k Gd v+++ ++ ++e+dk ++ev +p +G++k+++v  Gd+v++ +  + l v   e +a a a++p +a+a+++apa ++a e+aaa+aaa
  MMETSP1137-20121227|1375_1  65 SLAQMNVQSPVLLSSSPCRSFAS-KGEVMEVPIPSMGDsISEGTILTLLKKEGDYVAQEETVAEVETDKVTVEVKSPEAGTIKDMHVAEGDTVEVSGKFFSLTVgvgEPSAAAPASSPSEAPAPSPAPApSDAXEPAAAAAAA 206
                 44455555555544444444444.6789**********99*******************************************************999988876222334444444566666666666534555666555544 PP

>> TIGR01349  PDHac_trf_mito: pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.9   0.7   5.8e-15   1.8e-12       2     104 ..      94     198 ..      93     208 .] 0.77

  Alignments for each domain:
  == domain 1    score: 44.9 bits;  conditional E-value: 5.8e-15
   TIGR01349   2 ikmPaLsPtmeeGnlakwkkkeGDkvkeGdviaeietDkAtldvesqeegylakilvpegtkdvpv.nkliavlveekedvedavknyklessas..apkpkekae 104
                 + +P++  ++ eG++    kkeGD v + + +ae+etDk t++v+s e g++  + v+eg   v+v +k  +++v  +e  + a ++   e+ a   ap p+   e
  MMETSP1137-20121227|1375_1  94 VPIPSMGDSISEGTILTLLKKEGDYVAQEETVAEVETDKVTVEVKSPEAGTIKDMHVAEGDT-VEVsGKFFSLTVGVGEPSAAAPASSPSEAPAPspAPAPSDAXE 198
                 789*********************************************************88.8885688899998888888555544444443322333333322 PP

>> TIGR01108  oadA: oxaloacetate decarboxylase alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.2   0.2   1.8e-09   5.7e-07     520     578 ..     103     158 ..      41     162 .. 0.73

  Alignments for each domain:
  == domain 1    score: 26.2 bits;  conditional E-value: 1.8e-09
   TIGR01108 520 vtaplaGsivkvkvseGdevkeGevllvleamkmeteikaaaaGiveeilvkkGdkvav 578
                 +     G+i+ +  +eGd v++ e++  +e+ k+  e+k+++aG+++++ v++Gd+v v
  MMETSP1137-20121227|1375_1 103 I---SEGTILTLLKKEGDYVAQEETVAEVETDKVTVEVKSPEAGTIKDMHVAEGDTVEV 158
                 2...3699*************************************************87 PP

>> TIGR01235  pyruv_carbox: pyruvate carboxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   0.1   3.7e-08   1.2e-05    1061    1136 ..      78     159 ..      40     165 .. 0.74

  Alignments for each domain:
  == domain 1    score: 20.9 bits;  conditional E-value: 3.7e-08
   TIGR01235 1061 aevavrskadkgnkahvgap.m.....pGvvievkvkaGskvekGdvlvvleamkmetvvqapkdGtvkevlvkdGekidae 1136
                  ++   rs a kg+  +v  p m      G+++ ++ k+G+ v + ++++ +e+ k+ + v++p++Gt+k+++v +G+ ++ +
  MMETSP1137-20121227|1375_1   78 SSSPCRSFASKGEVMEVPIPsMgdsisEGTILTLLKKEGDYVAQEETVAEVETDKVTVEVKSPEAGTIKDMHVAEGDTVEVS 159 
                  5555566666666666554322111125899999*******************************************99865 PP

>> TIGR02712  urea_carbox: urea carboxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.0   1.7e-07   5.4e-05    1140    1193 ..     105     158 ..      80     166 .. 0.89

  Alignments for each domain:
  == domain 1    score: 18.9 bits;  conditional E-value: 1.7e-07
   TIGR02712 1140 agrlWkvlvevgdeveagdklviveamkmelavsapvaGkvkkilvkeGdavea 1193
                  +g++  +l ++gd v++++++  ve+ k+ ++v++p+aG++k+++v+eGd+ve 
  MMETSP1137-20121227|1375_1  105 EGTILTLLKKEGDYVAQEETVAEVETDKVTVEVKSPEAGTIKDMHVAEGDTVEV 158 
                  6788889999*****************************************985 PP

>> TIGR00999  8a0102: membrane fusion protein cluster 2 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0   3.3e-06     0.001      71     123 ..     113     165 ..     101     180 .. 0.85

  Alignments for each domain:
  == domain 1    score: 16.0 bits;  conditional E-value: 3.3e-06
   TIGR00999  71 kaevkaakselkalreakasasvevrsPfdGyiveksvtlGdyvapqaelfrv 123
                 k+e   +++e +++ +  ++  vev+sP +G i + +v +Gd v+   + f +
  MMETSP1137-20121227|1375_1 113 KKEGDYVAQEETVAEVETDKVTVEVKSPEAGTIKDMHVAEGDTVEVSGKFFSL 165
                 555666788889999999999***********************988777765 PP

>> TIGR03077  not_gcvH: glycine cleavage protein H-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.5   0.0    0.0014      0.44      28      54 ..      87     113 ..      69     119 .. 0.88
   2 !    7.1   0.1    0.0037       1.2      41      79 ..     116     154 ..     113     161 .. 0.84

  Alignments for each domain:
  == domain 1    score: 8.5 bits;  conditional E-value: 0.0014
   TIGR03077  28 nlgailhidlpsvgslikegevlvile 54 
                   g+++ + +ps+g +i eg +l +l+
  MMETSP1137-20121227|1375_1  87 SKGEVMEVPIPSMGDSISEGTILTLLK 113
                 5699*******************9986 PP

  == domain 2    score: 7.1 bits;  conditional E-value: 0.0037
   TIGR03077  41 gslikegevlvilessksaievlspvsgevievnlalkd 79 
                 g ++ + e +  +e+ k ++ev sp +g + ++ +a  d
  MMETSP1137-20121227|1375_1 116 GDYVAQEETVAEVETDKVTVEVKSPEAGTIKDMHVAEGD 154
                 5567777888999*****************999887655 PP

>> TIGR03794  NHLM_micro_HlyD: NHLM bacteriocin system secretion protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.4   0.0    0.0024      0.76     258     289 ..     102     133 ..      92     137 .. 0.67
   2 !    5.8   0.0    0.0038       1.2      59      81 ..     135     157 ..     128     162 .. 0.83

  Alignments for each domain:
  == domain 1    score: 6.4 bits;  conditional E-value: 0.0024
   TIGR03794 258 sqhdGrvlevsltkGdlVeagaslasleveda 289
                 s  +G++l +  ++Gd V+++  +a +e +  
  MMETSP1137-20121227|1375_1 102 SISEGTILTLLKKEGDYVAQEETVAEVETDKV 133
                 44567777777777777777777766666655 PP

  == domain 2    score: 5.8 bits;  conditional E-value: 0.0038
   TIGR03794  59 vtiqskgsGqvidlkvkvGdqvk 81 
                 v+++s+ +G++ d++v++Gd+v+
  MMETSP1137-20121227|1375_1 135 VEVKSPEAGTIKDMHVAEGDTVE 157
                 68999999999999999999986 PP

>> TIGR01730  RND_mfp: efflux transporter, RND family, MFP subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.5   0.1    0.0006      0.19      34      67 ..     105     138 ..     101     142 .. 0.86
   2 !    5.9   0.0    0.0037       1.2     136     159 ..     136     159 ..     133     167 .. 0.58

  Alignments for each domain:
  == domain 1    score: 8.5 bits;  conditional E-value: 0.0006
   TIGR01730  34 aGkvtkisvkeGqkVkkGqlLakldddelqlald 67 
                 +G + +++ keG++V ++++ a++++d++ ++++
  MMETSP1137-20121227|1375_1 105 EGTILTLLKKEGDYVAQEETVAEVETDKVTVEVK 138
                 7999999999*******99999999999998865 PP

  == domain 2    score: 5.9 bits;  conditional E-value: 0.0037
   TIGR01730 136 eirAPfdGvigkrlvevgayvsag 159
                 e+++P  G+i++  v +g++v+++
  MMETSP1137-20121227|1375_1 136 EVKSPEAGTIKDMHVAEGDTVEVS 159
                 455566666666666666666555 PP

>> TIGR00527  gcvH: glycine cleavage system H protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0       1.4   4.3e+02      35      54 ..      88     107 ..      84     114 .. 0.81
   2 ?   11.2   0.6    0.0002     0.064      43      85 ..     112     154 ..      96     161 .. 0.86

  Alignments for each domain:
  == domain 1    score: -1.2 bits;  conditional E-value: 1.4
   TIGR00527  35 lGdivfvelPevGaevsaee 54 
                  G+++ v +P +G+ +s + 
  MMETSP1137-20121227|1375_1  88 KGEVMEVPIPSMGDSISEGT 107
                 588889999*****999876 PP

  == domain 2    score: 11.2 bits;  conditional E-value: 0.0002
   TIGR00527  43 lPevGaevsaeeslgsvesvkaaselyaPvdGtvvevnealed 85 
                 l  +G+ v +ee ++ ve+ k + e+ +P  Gt+ ++  a  d
  MMETSP1137-20121227|1375_1 112 LKKEGDYVAQEETVAEVETDKVTVEVKSPEAGTIKDMHVAEGD 154
                 6789******************************998766555 PP

>> TIGR00531  BCCP: acetyl-CoA carboxylase, biotin carboxyl carrier protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   1.4   7.1e-05     0.023     103     152 ..     114     163 ..      38     167 .. 0.84
   2 ?   -0.3   5.2      0.88   2.8e+02      32      71 ..     167     206 ..     158     208 .] 0.62

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 7.1e-05
   TIGR00531 103 evGdkvkkgdvvciveAmklmneieaevagkvveilvedgqpveygepLi 152
                 + Gd v + ++v+ ve  k+  e+    ag+++++ v +g++ve   + +
  MMETSP1137-20121227|1375_1 114 KEGDYVAQEETVAEVETDKVTVEVKSPEAGTIKDMHVAEGDTVEVSGKFF 163
                 569*****************************************877665 PP

  == domain 2    score: -0.3 bits;  conditional E-value: 0.88
   TIGR00531  32 lkkeaaaakksvlqqaaapvvaqvpavasaavpaaavaae 71 
                 +   ++ a+ ++  ++ ap++ ++pa + a  paaa+aa 
  MMETSP1137-20121227|1375_1 167 VGVGEPSAAAPASSPSEAPAPSPAPAPSDAXEPAAAAAAA 206
                 5555566666666666666666666666677776666654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (208 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       187  (0.0455875); expected 82.0 (0.02)
Passed bias filter:                      159  (0.0387616); expected 82.0 (0.02)
Passed Vit filter:                        28  (0.00682594); expected 4.1 (0.001)
Passed Fwd filter:                        14  (0.00341297); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.37u 0.18s 00:00:00.55 Elapsed: 00:00:00.95
# Mc/sec: 288.99
//
Query:       MMETSP1137-20121227|1376_1  [L=273]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (273 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        34  (0.00828864); expected 82.0 (0.02)
Passed bias filter:                       30  (0.00731351); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.12s 00:00:00.32 Elapsed: 00:00:00.45
# Mc/sec: 800.73
//
Query:       MMETSP1137-20121227|1378_1  [L=138]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0024   14.5   0.0     0.0027   14.3   0.0    1.0  1  TIGR01817 nifA: Nif-specific regulatory protein


Domain annotation for each model (and alignments):
>> TIGR01817  nifA: Nif-specific regulatory protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.0   6.6e-07    0.0027      85     151 ..      47     118 ..      40     137 .. 0.75

  Alignments for each domain:
  == domain 1    score: 14.3 bits;  conditional E-value: 6.6e-07
   TIGR01817  85 slvvedvaaeelFldrlklsdsetvaF.igvpikadseviGvLai.eriae...srerleeevrfLemvanl 151
                  +vv+d +++++F ++  ++++ ++ F  g+pi+ +++ +G+++i +r  +   ++e++++ +++ +m+  l
  MMETSP1137-20121227|1378_1  47 VFVVPDATQDPRFVNNPLVTGDPNIRFyAGAPITFNHQRVGTVCIiDREPRpqaANENFSQLTKLAQMASSL 118
                 589**********999886655557662689**********9986255555555666677777777776655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (138 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        34  (0.00828864); expected 82.0 (0.02)
Passed bias filter:                       33  (0.00804486); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.17u 0.14s 00:00:00.31 Elapsed: 00:00:00.56
# Mc/sec: 319.55
//
Query:       MMETSP1137-20121227|1379_1  [L=77]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (77 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        56  (0.0136519); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.14s 00:00:00.28 Elapsed: 00:00:00.27
# Mc/sec: 376.41
//
Query:       MMETSP1137-20121227|1381_1  [L=541]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (541 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.16s 00:00:00.50 Elapsed: 00:00:00.41
# Mc/sec: 1741.61
//
Query:       MMETSP1137-20121227|1382_1  [L=294]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (294 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       152  (0.0370551); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.15s 00:00:00.38 Elapsed: 00:00:00.62
# Mc/sec: 625.88
//
Query:       MMETSP1137-20121227|1383_1  [L=146]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (146 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        97  (0.023647); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.13s 00:00:00.32 Elapsed: 00:00:00.35
# Mc/sec: 550.58
//
Query:       MMETSP1137-20121227|1384_1  [L=983]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (983 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       103  (0.0251097); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.58u 0.18s 00:00:00.76 Elapsed: 00:00:00.61
# Mc/sec: 2126.97
//
Query:       MMETSP1137-20121227|1385_1  [L=56]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        32  (0.00780107); expected 82.0 (0.02)
Passed bias filter:                       31  (0.00755729); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.13s 00:00:00.24 Elapsed: 00:00:00.28
# Mc/sec: 254.88
//
Query:       MMETSP1137-20121227|1386_1  [L=151]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (151 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        37  (0.00901999); expected 82.0 (0.02)
Passed bias filter:                       36  (0.00877621); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.15s 00:00:00.30 Elapsed: 00:00:00.27
# Mc/sec: 738.16
//
Query:       MMETSP1137-20121227|1387_1  [L=361]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (361 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        87  (0.0212092); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.15s 00:00:00.41 Elapsed: 00:00:00.59
# Mc/sec: 807.59
//
Query:       MMETSP1137-20121227|1388_1  [L=59]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (59 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        46  (0.011214); expected 82.0 (0.02)
Passed bias filter:                       44  (0.0107265); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.39
# Mc/sec: 199.68
//
Query:       MMETSP1137-20121227|1389_1  [L=60]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        36  (0.00877621); expected 82.0 (0.02)
Passed bias filter:                       34  (0.00828864); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.11s 00:00:00.23 Elapsed: 00:00:00.56
# Mc/sec: 141.42
//
Query:       MMETSP1137-20121227|1390_1  [L=544]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (544 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       120  (0.029254); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.14s 00:00:00.51 Elapsed: 00:00:00.81
# Mc/sec: 886.45
//
Query:       MMETSP1137-20121227|1392_1  [L=541]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (541 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        97  (0.023647); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.17s 00:00:00.49 Elapsed: 00:00:00.67
# Mc/sec: 1065.76
//
Query:       MMETSP1137-20121227|1393_1  [L=383]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.12   10.6   8.0        1.8    6.7   0.7    2.8  2  TIGR04165 methano_modCys: Cys-rich peptide, TIGR04165 family
       0.81    7.7   5.5        8.5    4.4   3.8    2.5  1  TIGR02605 CxxC_CxxC_SSSS: putative regulatory protein, FmdB family


Domain annotation for each model (and alignments):
>> TIGR04165  methano_modCys: Cys-rich peptide, TIGR04165 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   0.6   0.00094       1.9      31      45 ..     322     348 ..     284     352 .. 0.72
   2 ?    6.7   0.7   0.00088       1.8       9      18 ..     365     375 ..     364     380 .. 0.82

  Alignments for each domain:
  == domain 1    score: 6.7 bits;  conditional E-value: 0.00094
   TIGR04165  31 e............aevgeikCskCGyv 45 
                              + + e+ C +CGy 
  MMETSP1137-20121227|1393_1 322 AsavstskvkkvpGATHEFECGDCGYT 348
                 15555555555668999*********6 PP

  == domain 2    score: 6.7 bits;  conditional E-value: 0.00088
   TIGR04165   9 kCPkCG.skDK 18 
                 kCP+CG skDK
  MMETSP1137-20121227|1393_1 365 KCPECGaSKDK 375
                 8*****66788 PP

>> TIGR02605  CxxC_CxxC_SSSS: putative regulatory protein, FmdB family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   3.8    0.0041       8.5       4      35 ..     338     372 ..     336     378 .. 0.74

  Alignments for each domain:
  == domain 1    score: 4.4 bits;  conditional E-value: 0.0041
   TIGR02605   4 YeYrCtaCghefevlqkmsd...dplasCPeCgse 35 
                  e++C +Cg ++      +     +  +CPeCg++
  MMETSP1137-20121227|1393_1 338 HEFECGDCGYTMFPAAGREGkffGDGFKCPECGAS 372
                 69999999998765544444458899999999984 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (383 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       306  (0.0745978); expected 82.0 (0.02)
Passed bias filter:                      182  (0.0443686); expected 82.0 (0.02)
Passed Vit filter:                        27  (0.00658216); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.34u 0.15s 00:00:00.49 Elapsed: 00:00:00.56
# Mc/sec: 886.87
//
Query:       MMETSP1137-20121227|1394_1  [L=269]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (269 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        56  (0.0136519); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.15s 00:00:00.40 Elapsed: 00:00:00.32
# Mc/sec: 1109.53
//
Query:       MMETSP1137-20121227|1395_1  [L=159]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (159 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        88  (0.0214529); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.16s 00:00:00.34 Elapsed: 00:00:00.33
# Mc/sec: 635.95
//
Query:       MMETSP1137-20121227|1396_1  [L=304]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (304 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        83  (0.020234); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.15s 00:00:00.40 Elapsed: 00:00:00.44
# Mc/sec: 911.92
//
Query:       MMETSP1137-20121227|1397_1  [L=262]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (262 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        67  (0.0163335); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.12s 00:00:00.34 Elapsed: 00:00:00.36
# Mc/sec: 960.59
//
Query:       MMETSP1137-20121227|1398_1  [L=206]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (206 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       117  (0.0285227); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.17s 00:00:00.39 Elapsed: 00:00:00.27
# Mc/sec: 1007.03
//
Query:       MMETSP1137-20121227|1399_1  [L=300]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-22   77.9   0.0    1.8e-22   77.5   0.0    1.1  1  TIGR01931 cysJ: sulfite reductase [NADPH] flavoprotein, alpha-component
     0.0013   17.1   0.1     0.0029   16.0   0.0    1.7  2  TIGR01753 flav_short: flavodoxin


Domain annotation for each model (and alignments):
>> TIGR01931  cysJ: sulfite reductase [NADPH] flavoprotein, alpha-component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.5   0.0   8.6e-26   1.8e-22     106     208 ..      89     194 ..      77     227 .. 0.86

  Alignments for each domain:
  == domain 1    score: 77.5 bits;  conditional E-value: 8.6e-26
   TIGR01931 106 ekllllvistqGeGepPeeaislhkflaskkaPkl.enlkysvlgLGDssYeffCqagkdfDkrleeLGgkrllervdaD.vd.yeaaaaeWseevlkalkekakk 208
                  + +++v+s  G+G++P++a ++ ++++ +  P++ e + ++v +LGDs Y +fC++gk fD+++e LGgkr l+r d D vd +ea+ + W+e+++ al + a+ 
  MMETSP1137-20121227|1399_1  89 GTPVIVVTSSTGNGDAPDNAEKFLRYIKRRTTPNIfEGVPFAVCALGDSNYXLFCEVGKLFDQHIERLGGKRFLKRCDVDeVDgLEAHLEPWKERLALALAQLAAA 194
                 56789*****************************74789***************************************9867657899999****99999875554 PP

>> TIGR01753  flav_short: flavodoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0   1.4e-06    0.0029      48     122 ..      91     169 ..      74     185 .. 0.83
   2 ?   -3.4   0.1       1.3   2.7e+03     100     126 ..     203     230 ..     197     233 .. 0.54

  Alignments for each domain:
  == domain 1    score: 16.0 bits;  conditional E-value: 1.4e-06
   TIGR01753  48 avllGcstwgdedleeddflpfveeleeid....legkkvalfGsgdtay.efceavdkleerlkeaGakiiaeglkvee 122
                  v++ +s++g++d + d+ + f+  ++++     +eg   a+ + gd++y  fce+ + + ++++ +G k + +   v+e
  MMETSP1137-20121227|1399_1  91 PVIVVTSSTGNGDAP-DNAEKFLRYIKRRTtpniFEGVPFAVCALGDSNYxLFCEVGKLFDQHIERLGGKRFLKRCDVDE 169
                 57888999*******.9999**99999875233379999*****************************998887777765 PP

  == domain 2    score: -3.4 bits;  conditional E-value: 1.3
   TIGR01753 100 dkleerlkeaGakiia.eglkveedpee 126
                 d + +  ++ Ga++ a     +  +pee
  MMETSP1137-20121227|1399_1 203 DGVDAAEAKNGADVGAnPAAPAASAPEE 230
                 4445555566777777333345555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (300 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       102  (0.0248659); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.25u 0.13s 00:00:00.38 Elapsed: 00:00:00.42
# Mc/sec: 942.78
//
Query:       MMETSP1137-20121227|1400_1  [L=92]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (92 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        59  (0.0143832); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.13s 00:00:00.26 Elapsed: 00:00:00.26
# Mc/sec: 467.04
//
Query:       MMETSP1137-20121227|1401_1  [L=1364]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1364 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       240  (0.058508); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                        19  (0.00463189); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.86u 0.18s 00:00:01.04 Elapsed: 00:00:01.09
# Mc/sec: 1651.68
//
Query:       MMETSP1137-20121227|1402_1  [L=268]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.1e-22   77.4   0.0    6.5e-20   69.2   0.0    2.1  2  TIGR01934 MenG_MenH_UbiE: ubiquinone/menaquinone biosynthesis methyltransferase
    1.7e-21   75.0   0.0    2.4e-21   74.5   0.0    1.1  1  TIGR02072 BioC: biotin biosynthesis protein BioC
      8e-14   49.5   0.0    2.5e-11   41.4   0.0    2.1  2  TIGR02752 MenG_heptapren: 2-heptaprenyl-1,4-naphthoquinone methyltransferase
    1.5e-08   32.1   0.0    2.1e-08   31.6   0.0    1.2  1  TIGR01983 UbiG: 3-demethylubiquinone-9 3-O-methyltransferase
    3.9e-07   27.5   0.0    5.3e-07   27.1   0.0    1.1  1  TIGR02021 BchM-ChlM: magnesium protoporphyrin O-methyltransferase
    1.7e-06   26.2   0.0    2.4e-06   25.7   0.0    1.3  1  TIGR02469 CbiT: precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit
    7.2e-06   23.5   0.0    1.1e-05   22.9   0.0    1.2  1  TIGR03534 RF_mod_PrmC: protein-(glutamine-N5) methyltransferase, release factor-specific
    2.1e-05   22.0   0.0    4.1e-05   21.0   0.0    1.4  1  TIGR02081 metW: methionine biosynthesis protein MetW
    5.2e-05   20.5   0.0    7.1e-05   20.0   0.0    1.1  1  TIGR00755 ksgA: dimethyladenosine transferase
     0.0014   15.8   0.0     0.0019   15.4   0.0    1.1  1  TIGR03533 L3_gln_methyl: protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific
     0.0067   14.7   0.0       0.01   14.1   0.0    1.3  1  TIGR01444 fkbM_fam: methyltransferase, FkbM family
      0.007   13.3   0.0      0.021   11.8   0.0    1.8  1  TIGR00452 TIGR00452: putative methyltransferase
  ------ inclusion threshold ------
      0.011   12.1   0.0      0.014   11.7   0.0    1.1  1  TIGR04074 bacter_Hen1: 3' terminal RNA ribose 2'-O-methyltransferase Hen1
      0.018   12.3   0.0      0.024   11.9   0.0    1.1  1  TIGR00006 TIGR00006: S-adenosyl-methyltransferase MraW
      0.031   11.8   0.0      0.045   11.2   0.0    1.3  1  TIGR00095 TIGR00095: RNA methyltransferase, RsmD family


Domain annotation for each model (and alignments):
>> TIGR01934  MenG_MenH_UbiE: ubiquinone/menaquinone biosynthesis methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.2   0.0   2.4e-22   6.5e-20      38     153 ..      36     150 ..       5     156 .. 0.83
   2 !    7.1   0.0    0.0023      0.63     181     210 ..     152     181 ..     148     185 .. 0.90

  Alignments for each domain:
  == domain 1    score: 69.2 bits;  conditional E-value: 2.4e-22
   TIGR01934  38 e.keekvlDvatGtGdlaielakkae.akvtgvDlseemLevakkkakekeeanvefieadaeeLpfednsfdavtiafGlRNvtdiekaLkelaRVlkpggrlvilefskpknallk 153
                   +++ vlDv +GtG l+ ++ ++++ a++t++D s++mLe ak k  e   ++ +f  ada++Lpfednsfdav  +  l    +   aL+e  RV+kpg+ ++ +   +pk  +++
  MMETSP1137-20121227|1402_1  36 LaSSAAVLDVGAGTGTLSKQVLRRYPqAELTLLDQSPDMLERAKVKP-EL--QKCRFELADAQSLPFEDNSFDAVVSSGTLYYYPEPVVALREQLRVVKPGADVLAMGSLQPKPLFIR 150
                 336789*****************9999*****************995.34..469***********************99***************************99999977665 PP

  == domain 2    score: 7.1 bits;  conditional E-value: 0.0023
   TIGR01934 181 LaeSiekfpskeelaallkeagfeevryrs 210
                 Lae  ++fp++e+ +  ++eagf++vr + 
  MMETSP1137-20121227|1402_1 152 LAETFNRFPTEEQYKGWFEEAGFSNVRCCY 181
                 88999*********************9875 PP

>> TIGR02072  BioC: biotin biosynthesis protein BioC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.5   0.0   8.8e-24   2.4e-21      18     175 ..      27     178 ..      20     195 .. 0.89

  Alignments for each domain:
  == domain 1    score: 74.5 bits;  conditional E-value: 8.8e-24
   TIGR02072  18 eiakkLlellkekrkfepakvLdiGcGtGiltrallkrfpqaelialDiseemleqakkkls..nvqficgdieklplekksfDlivSnlalQWlddlsevlaelarvlkpgG.llafstfgketlkElrqlfkqveahglrflsleelkallkke.fellk 175
                 e++  Ll+ l        a+vLd+G+GtG l++++l+r+pqael++lD s+ mle+ak k +  +  f  +d+++lp+e++sfD +vS+ +l    ++  +l+e  rv+kpg+ +la+ ++ ++ l  +r l +      +rf++ e++k +++++ f+++ 
  MMETSP1137-20121227|1402_1  27 EAGLDLLSPLAS-----SAAVLDVGAGTGTLSKQVLRRYPQAELTLLDQSPDMLERAKVKPElqKCRFELADAQSLPFEDNSFDAVVSSGTLYYYPEPVVALREQLRVVKPGAdVLAMGSLQPKPLF-IRVLAE----TFNRFPTEEQYKGWFEEAgFSNVR 178
                 556666777766.....369*************************************99888989**********************************************9867888888888875.666666....789************998887765 PP

>> TIGR02752  MenG_heptapren: 2-heptaprenyl-1,4-naphthoquinone methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.4   0.0   9.2e-14   2.5e-11      45     157 ..      38     146 ..       6     157 .. 0.83
   2 !    6.7   0.0    0.0035      0.96     189     217 ..     152     180 ..     149     192 .. 0.87

  Alignments for each domain:
  == domain 1    score: 41.4 bits;  conditional E-value: 9.2e-14
   TIGR02752  45 kgkkaldvccgtadwaialaeavgkegevkgldfsenmlsvgkekvkdaklenvelvhgnamelpyednsfdyvtigfglrnvpdylqvlkemarvvkpggkvvcletsqptl 157
                   + +ldv  gt+  + ++ +   ++ e++ ld s +ml+ +k k    +l++ ++   +a  lp+ednsfd v     l   p+ +  l+e  rvvkpg  v  + + qp+ 
  MMETSP1137-20121227|1402_1  38 SSAAVLDVGAGTGTLSKQVLRRY-PQAELTLLDQSPDMLERAKVK---PELQKCRFELADAQSLPFEDNSFDAVVSSGTLYYYPEPVVALREQLRVVKPGADVLAMGSLQPKP 146
                 56789********9998887764.7899***********866544...357777888899*****************9*****************************999974 PP

  == domain 2    score: 6.7 bits;  conditional E-value: 0.0035
   TIGR02752 189 lqesarefpgkdelaelfkeaglkdvkvk 217
                 l e+ + fp +++ +  f+eag+++v+  
  MMETSP1137-20121227|1402_1 152 LAETFNRFPTEEQYKGWFEEAGFSNVRCC 180
                 6788899*******************864 PP

>> TIGR01983  UbiG: 3-demethylubiquinone-9 3-O-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.6   0.0   7.8e-11   2.1e-08      49     150 ..      38     137 ..      12     143 .. 0.82

  Alignments for each domain:
  == domain 1    score: 31.6 bits;  conditional E-value: 7.8e-11
   TIGR01983  49 eglkvlDvGcGgGllseslarl..gaevtgiDlseelievAklhakkdplkkieyelksveelaeeekesfDvvlamEvlEHvadleeilkecaellkpggilf 150
                 ++  vlDvG+G G ls+ + r+  +ae t +D+s +++e Ak++ + ++    ++el++++ l  e ++sfD+v+++  l   +++   l+e ++++kpg+ ++
  MMETSP1137-20121227|1402_1  38 SSAAVLDVGAGTGTLSKQVLRRypQAELTLLDQSPDMLERAKVKPELQKC---RFELADAQSLPFE-DNSFDAVVSSGTLYYYPEPVVALREQLRVVKPGADVL 137
                 4789*************9988723456***************98776665...6*********988.677******************************9875 PP

>> TIGR02021  BchM-ChlM: magnesium protoporphyrin O-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.1   0.0   1.9e-09   5.3e-07      38     173 ..      23     160 ..      15     168 .. 0.73

  Alignments for each domain:
  == domain 1    score: 27.1 bits;  conditional E-value: 1.9e-09
   TIGR02021  38 eamrekllewlpkdslkGkkvlDAGCGtGllsielAkr..GaivkavDiseklvelarkraekedeaenveFevndlesle...gkfDavvalDvlihYpaedia..kalerlasltkesvvltfAPktailaalkaiGelfp 173
                 ++mre  l+ l+  + +   vlD G GtG ls ++ +r   a+ +  D s++++e a+ + e +    + +Fe  d +sl    + fDavv+  +l +Yp+  +a  + l  +   +   ++ ++ Pk  ++++l    ++fp
  MMETSP1137-20121227|1402_1  23 DEMREAGLDLLSP-LASSAAVLDVGAGTGTLSKQVLRRypQAELTLLDQSPDMLERAKVKPELQ----KCRFELADAQSLPfedNSFDAVVSSGTLYYYPEPVVAlrEQLRVVKPGADVLAMGSLQPKPLFIRVLAETFNRFP 160
                 6788888888884.377889**************9998445788999*******9998766555....578999988886443489*************98644311445555555555555556666666666666655655 PP

>> TIGR02469  CbiT: precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.7   0.0   8.6e-09   2.4e-06       3      59 ..      21      78 ..      19     128 .. 0.81

  Alignments for each domain:
  == domain 1    score: 25.7 bits;  conditional E-value: 8.6e-09
   TIGR02469  3 TkeevRaltLakLrlkkgd.vllDiGaGtGsvtieaarlvpkgrvyaierneealeli 59
                T  e+R   L+ L + + +  +lD+GaGtG+++  + r+ p+ +++ ++++++ le  
  MMETSP1137-20121227|1402_1 21 TSDEMREAGLDLLSPLASSaAVLDVGAGTGTLSKQVLRRYPQAELTLLDQSPDMLERA 78
                899**********99888779******************************9988754 PP

>> TIGR03534  RF_mod_PrmC: protein-(glutamine-N5) methyltransferase, release factor-specific
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.9   0.0     4e-08   1.1e-05      88     162 ..      38     109 ..      22     110 .. 0.81

  Alignments for each domain:
  == domain 1    score: 22.9 bits;  conditional E-value: 4e-08
   TIGR03534  88 eklkvlDlgtGsGaIalalakelpdakviavDiseeAlkvarkNakrlglkeveflksdllealeekgkfdlivs 162
                 +++ vlD+g+G+G++   ++ ++p+a++++ D s++ l+ a+   + ++ + +e+  ++ l ++ e+++fd +vs
  MMETSP1137-20121227|1402_1  38 SSAAVLDVGAGTGTLSKQVLRRYPQAELTLLDQSPDMLERAKVKPELQKCR-FELADAQSL-PF-EDNSFDAVVS 109
                 3569*************************************9877666665.555555555.66.9999***998 PP

>> TIGR02081  metW: methionine biosynthesis protein MetW
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.0   0.0   1.5e-07   4.1e-05      13     103 ..      38     131 ..      30     137 .. 0.83

  Alignments for each domain:
  == domain 1    score: 21.0 bits;  conditional E-value: 1.5e-07
   TIGR02081  13 agsrvLDlGcGdGeLLa.llrdekqvegaGleideenvlac.varGveviqqdlde.gLeafedksfDvvvlsqtlqavrnteeiLdellRvgr 103
                   + vLD+G+G G+L + +lr   q e + l+ + +++  + v+  ++    +l + +   fed+sfD vv s tl    ++   L+e lRv +
  MMETSP1137-20121227|1402_1  38 SSAAVLDVGAGTGTLSKqVLRRYPQAELTLLDQSPDMLERAkVKPELQKCRFELADaQSLPFEDNSFDAVVSSGTLYYYPEPVVALREQLRVVK 131
                 5678***********8626778888888999999999976615667999998875515557******************************976 PP

>> TIGR00755  ksgA: dimethyladenosine transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   0.0   2.6e-07   7.1e-05      10     100 ..      18     109 ..      14     123 .. 0.72

  Alignments for each domain:
  == domain 1    score: 20.0 bits;  conditional E-value: 2.6e-07
   TIGR00755  10 nflidesvlqkiveaaevee.sdvvlEiGpGlGaLTeellekakk..vvaiEiDkrlaekLrkkle.leekleviegDalkldleefakkekvvs 100
                 ++ +++++++  ++ + + + s +vl +G+G+G+L++++l+++++  ++ +   +++ e+ + k+e ++ ++e+   Da +l +e++   ++vvs
  MMETSP1137-20121227|1402_1  18 KYFTSDEMREAGLDLLSPLAsSAAVLDVGAGTGTLSKQVLRRYPQaeLTLLDQSPDMLERAKVKPElQKCRFELA--DAQSLPFEDNS-FDAVVS 109
                 555556666666666555442789******************98755888888899*******999444556665..77777777554.345554 PP

>> TIGR03533  L3_gln_methyl: protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   7.1e-06    0.0019     121     177 ..      38      94 ..      23     112 .. 0.77

  Alignments for each domain:
  == domain 1    score: 15.4 bits;  conditional E-value: 7.1e-06
   TIGR03533 121 evkrvldlctGsGClaiaaaeafpeaevdavDisedaLevaeenieeyeledrveli 177
                 + + vld+ +G+G l+ ++ +++p+ae+ + D s d Le a+   e  + + +++  
  MMETSP1137-20121227|1402_1  38 SSAAVLDVGAGTGTLSKQVLRRYPQAELTLLDQSPDMLERAKVKPELQKCRFELADA 94 
                 5678***********************************999866655554444444 PP

>> TIGR01444  fkbM_fam: methyltransferase, FkbM family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.0   3.8e-05      0.01       2      48 ..      42      88 ..      41     110 .. 0.91

  Alignments for each domain:
  == domain 1    score: 14.1 bits;  conditional E-value: 3.8e-05
   TIGR01444  2 viDiGAniGdvslvfaravaegrviafEPlpdllekleenvklnnlk 48
                v+D+GA  G++s  ++r++++++  + + +pd+le+++ + +l++++
  MMETSP1137-20121227|1402_1 42 VLDVGAGTGTLSKQVLRRYPQAELTLLDQSPDMLERAKVKPELQKCR 88
                89***********************************9998888874 PP

>> TIGR00452  TIGR00452: putative methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.8   0.0   7.7e-05     0.021     173     276 ..      87     184 ..      18     193 .. 0.64

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 7.7e-05
   TIGR00452 173 aillplGieqlq.elkafdtvfslGvlyhrksplealkqlkdqlvkeGelvletlvidgdlnivlvpkdryakmknvyfipsvaalknwlekvGfenvrivdvak 276
                  +++    + l+ e ++fd+v s G ly+   p+ al++   ++vk G  vl    ++ +   + v ++++ +       p+    k+w e  Gf nvr+  +++
  MMETSP1137-20121227|1402_1  87 CRFELADAQSLPfEDNSFDAVVSSGTLYYYPEPVVALREQL-RVVKPGADVLAMGSLQPKPLFIRVLAETFNR------FPTEEQYKGWFEEAGFSNVRCCYISN 184
                 44444444445413459*************99998887543.4678888888776666655566666666655......599******************98775 PP

>> TIGR04074  bacter_Hen1: 3' terminal RNA ribose 2'-O-methyltransferase Hen1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0     5e-05     0.014     282     337 ..      38      87 ..      14     109 .. 0.79

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 5e-05
   TIGR04074 282 garsvlDlGcGegkLlkaLlaekqfekivgvdvsareLekakrrlkldrlsekqre 337
                 ++  vlD+G+G g L k++l+     +++ +d s   Le+ak + +l++       
  MMETSP1137-20121227|1402_1  38 SSAAVLDVGAGTGTLSKQVLRRYPQAELTLLDQSPDMLERAKVKPELQK------C 87 
                 4568*************************************98765544......3 PP

>> TIGR00006  TIGR00006: S-adenosyl-methyltransferase MraW
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   8.9e-05     0.024      24      65 ..      39      80 ..      27     101 .. 0.87

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 8.9e-05
   TIGR00006 24 dgiyiDlTlGeggHskaiLeklsegrLiaidrDkqaieaake 65
                    +D+ +G+g  sk++L ++++ +L+ +d+ ++ +e+ak 
  MMETSP1137-20121227|1402_1 39 SAAVLDVGAGTGTLSKQVLRRYPQAELTLLDQSPDMLERAKV 80
                56789**********************************985 PP

>> TIGR00095  TIGR00095: RNA methyltransferase, RsmD family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   0.00016     0.045      35      84 ..      21      71 ..      11     109 .. 0.86

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 0.00016
   TIGR00095 35 ttdrVreslFnilrkeivgakvLdlfaGsgalglEALsRga.kkvvfveqd 84
                t d  re+  ++l +    a+vLd+ aG+g+l+   L R+  ++ ++++q+
  MMETSP1137-20121227|1402_1 21 TSDEMREAGLDLLSPLASSAAVLDVGAGTGTLSKQVLRRYPqAELTLLDQS 71
                7899999999***************************99851456666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (268 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       130  (0.0316919); expected 82.0 (0.02)
Passed bias filter:                      123  (0.0299854); expected 82.0 (0.02)
Passed Vit filter:                        25  (0.00609459); expected 4.1 (0.001)
Passed Fwd filter:                        15  (0.00365675); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.30u 0.15s 00:00:00.44 Elapsed: 00:00:00.46
# Mc/sec: 768.98
//
Query:       MMETSP1137-20121227|1403_1  [L=67]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (67 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        33  (0.00804486); expected 82.0 (0.02)
Passed bias filter:                       29  (0.00706972); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.17s 00:00:00.29 Elapsed: 00:00:00.47
# Mc/sec: 188.15
//
Query:       MMETSP1137-20121227|1405_1  [L=80]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (80 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        34  (0.00828864); expected 82.0 (0.02)
Passed bias filter:                       33  (0.00804486); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.12s 00:00:00.25 Elapsed: 00:00:00.72
# Mc/sec: 146.65
//
Query:       MMETSP1137-20121227|1406_1  [L=260]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (260 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       163  (0.0397367); expected 82.0 (0.02)
Passed bias filter:                      134  (0.032667); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.19s 00:00:00.43 Elapsed: 00:00:00.53
# Mc/sec: 647.49
//
Query:       MMETSP1137-20121227|1407_1  [L=302]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.9e-27   93.9   0.1    2.6e-27   93.5   0.1    1.1  1  TIGR00231 small_GTP: small GTP-binding protein domain
     0.0012   15.6   0.2     0.0041   13.9   0.1    1.7  1  TIGR03156 GTP_HflX: GTP-binding protein HflX
     0.0025   14.7   0.1     0.0035   14.2   0.1    1.3  1  TIGR03594 GTPase_EngA: ribosome-associated GTPase EngA
  ------ inclusion threshold ------
      0.022   11.0   0.0       0.03   10.5   0.0    1.1  1  TIGR01393 lepA: GTP-binding protein LepA
      0.023   11.7   0.1      0.041   10.9   0.0    1.4  2  TIGR03597 GTPase_YqeH: ribosome biogenesis GTPase YqeH


Domain annotation for each model (and alignments):
>> TIGR00231  small_GTP: small GTP-binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   93.5   0.1   3.1e-30   2.6e-27       4     146 ..      30     174 ..      27     182 .. 0.94

  Alignments for each domain:
  == domain 1    score: 93.5 bits;  conditional E-value: 3.1e-30
   TIGR00231   4 ikivivGhvdvGKstLlnsllknkisiteskpgvtrdyvteqieedGktykvnllDTaGqedfdairrlyvreverslevvdivilvldveeglekqtkeiiheakkkgvpiilvvnKiDlkd......dlktkvkslfaklnaepiie 146
                 +k  i+G+ +vGKs+Ll +++++  +++  + +++ ++ ++ i++d+k++k++++DTaGqe+f+ i+ +y+r + ++l v+d+++   +++++   + + i+++a  + v  +l +nK D+ +       ++t++++++a++++++i+ 
  MMETSP1137-20121227|1407_1  30 FKYIIIGDTGVGKSCLLLQFTDKR-FQQVHDLTIGVEFGARMITIDNKQIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTNQ-ASFDSIS-GWMRAIEQHAS-DTVNKVLLGNKADTSGslasarRVSTEQGQKLAASAKNDINV 174
                 6778******************99.999999*******************************************************.*******.***********.****************99998889999999999988888764 PP

>> TIGR03156  GTP_HflX: GTP-binding protein HflX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.1     5e-06    0.0041     187     343 ..      27     177 ..       9     185 .. 0.82

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 5e-06
   TIGR03156 187 sevptvalvGYTNaGKstllnaltkaevlaedklFATLdpttrrlklpeee.evlltDTVGFirkLPheLveaFka.TLeevaeadlllhvvDasdeeaeeqieaveevLeelgaeeipvllvlNkidkle.eeeleeleekkeeavlvsAkkgegleeL 343
                 + +++  ++G T  GKs ll ++t+++  +   l    +   r +++++++ ++ + DT G          e F++ T    + a  +l v D+++++  ++i+   + +e+   ++++++l+ Nk+d+    ++++++++++ ++++ sAk++ ++e+ 
  MMETSP1137-20121227|1407_1  27 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQQVHDLTIGVEFGARMITIDNKQiKLQIWDTAGQ---------ERFRTiTTAYYRGAMGILLVYDVTNQASFDSISGWMRAIEQHASDTVNKVLLGNKADTSGsLASARRVSTEQGQKLAASAKNDINVENA 177
                 456777899*******************99999*999********999886588899***94.........4455424444567778999***************************************98545566666677899********999875 PP

>> TIGR03594  GTPase_EngA: ribosome-associated GTPase EngA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.1   4.2e-06    0.0035       4     163 ..      33     188 ..      17     212 .. 0.73

  Alignments for each domain:
  == domain 1    score: 14.2 bits;  conditional E-value: 4.2e-06
   TIGR03594   4 aivGrpNVGKStLfNrlvkkrkAived.tpgvTRDrkygeaelkgkefiliDTgGleeeedelekeireqaelaieeadvilfvvdareglteeDeeiaklLrkskkpv......ilvvNKvdnkkeeaeaaefyslGlgevlaiSaehgrgikdLldeileelpee 163
                  i+G + VGKS L+ +++ kr   v+d t gv    +  +++ k+ ++++ DT+G         ++ r+ +++  + a  il+v d++++ +    +i  ++r  +++       +l+ NK+d+  +  + a+ +s   g+ la Sa+++ ++++ + +i ++++++
  MMETSP1137-20121227|1407_1  33 IIIGDTGVGKSCLLLQFTDKRFQQVHDlTIGVEFGARMITIDNKQIKLQIWDTAGQ--------ERFRTITTAYYRGAMGILLVYDVTNQASF--DSISGWMRAIEQHAsdtvnkVLLGNKADTSGS-LASARRVSTEQGQKLAASAKNDINVENAFFTIARDIKHR 188
                 69999999999999999999988888834699999999999999999999999997........56677788888899999999999885544..35555665555444000111444566665533.334666677778888888888888888777777776665 PP

>> TIGR01393  lepA: GTP-binding protein LepA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   3.6e-05      0.03      65     181 ..      73     187 ..      57     197 .. 0.87

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 3.6e-05
   TIGR01393  65 kdgeeyvlnlidtPGhvdfsyevsrslaaceGalllvdaaqGveaqtlanvylalekdleiiPvinkidlPsadvervkkeieeviGldaeeailvsaktGigieelleaivkkvpa 181
                  d+++ +l++ dt G   f    +     + G ll+ d +      +++    a+e+       +nk+ l +    +     +  +  ++ + +++sak+ i++e+ + +i + + +
  MMETSP1137-20121227|1407_1  73 IDNKQIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTNQASFDSISGWMRAIEQHAS--DTVNKVLLGNKADTSGSLASARRVSTEQGQKLAASAKNDINVENAFFTIARDIKH 187
                 5788999************9999999999***************************9865..89******987666666677788999******************99999888876 PP

>> TIGR03597  GTPase_YqeH: ribosome biogenesis GTPase YqeH
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0     5e-05     0.041     156     215 ..      30      88 ..       6     118 .. 0.78
   2 ?   -2.4   0.0      0.52   4.2e+02      75     105 ..     117     148 ..      88     176 .. 0.62

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 5e-05
   TIGR03597 156 kdvyvvGvtNVGKSsliNkllklnkgkkkvittSkfpgT...TldlieipldkesvllDtpGi 215
                  + +++G t VGKS l+ +  ++  ++ + +t+   +g    T+d  +i+l    ++ Dt+G 
  MMETSP1137-20121227|1407_1  30 FKYIIIGDTGVGKSCLLLQFTDKRFQQVHDLTIGVEFGArmiTIDNKQIKL----QIWDTAGQ 88 
                 5789**************999887666666888766664344888889988....89999996 PP

  == domain 2    score: -2.4 bits;  conditional E-value: 0.52
   TIGR03597  75 fdlegslikelkrfvke.nkvllvvNKidllp 105
                 fd    +++ +++ +++  + +l++NK d   
  MMETSP1137-20121227|1407_1 117 FDSISGWMRAIEQHASDtVNKVLLGNKADTSG 148
                 44445566666655443146677788888654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (302 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       200  (0.0487567); expected 82.0 (0.02)
Passed bias filter:                      161  (0.0392491); expected 82.0 (0.02)
Passed Vit filter:                        25  (0.00609459); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.33u 0.17s 00:00:00.50 Elapsed: 00:00:00.41
# Mc/sec: 972.21
//
Query:       MMETSP1137-20121227|1408_1  [L=467]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (467 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       103  (0.0251097); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.16s 00:00:00.47 Elapsed: 00:00:00.53
# Mc/sec: 1163.00
//
Query:       MMETSP1137-20121227|1410_1  [L=309]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0079   13.2   0.0      0.012   12.6   0.0    1.2  1  TIGR02674 cas_cyan_RAMP_2: CRISPR-associated RAMP protein, Csx10 family


Domain annotation for each model (and alignments):
>> TIGR02674  cas_cyan_RAMP_2: CRISPR-associated RAMP protein, Csx10 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.6   0.0   2.9e-06     0.012     201     273 ..     208     279 ..     186     295 .. 0.82

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 2.9e-06
   TIGR02674 201 lvfaGyiyvekddlaelleallnevlrlGgsvsrGlGrVevaakevqaikdieervrvfnqaldkrwqdlkel 273
                  +faG      ++  e +++++  +  lGg+ +  l rV+v+  + + ++ i +r+++ n   + rwq  +el
  MMETSP1137-20121227|1410_1 208 WLFAGLHAR-AEQELESVAQFVSYRSELGGAFQLELARVKVQCGKQREADRIRQRIQQENTSSSMRWQAEREL 279
                 566665443.4444578889999999******************************************87666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (309 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       114  (0.0277913); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.25u 0.18s 00:00:00.43 Elapsed: 00:00:00.38
# Mc/sec: 1073.28
//
Query:       MMETSP1137-20121227|1412_1  [L=349]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (349 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        73  (0.0177962); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.17s 00:00:00.44 Elapsed: 00:00:00.50
# Mc/sec: 921.28
//
Query:       MMETSP1137-20121227|1413_1  [L=88]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (88 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        23  (0.00560702); expected 82.0 (0.02)
Passed bias filter:                       23  (0.00560702); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.28
# Mc/sec: 400.52
//
Query:       MMETSP1137-20121227|1414_1  [L=105]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (105 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       118  (0.0287665); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.16s 00:00:00.31 Elapsed: 00:00:00.23
# Mc/sec: 602.56
//
Query:       MMETSP1137-20121227|1415_1  [L=614]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (614 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       139  (0.0338859); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.15s 00:00:00.55 Elapsed: 00:00:00.67
# Mc/sec: 1209.57
//
Query:       MMETSP1137-20121227|1416_1  [L=196]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (196 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        46  (0.011214); expected 82.0 (0.02)
Passed bias filter:                       44  (0.0107265); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.16s 00:00:00.34 Elapsed: 00:00:00.46
# Mc/sec: 562.39
//
Query:       MMETSP1137-20121227|1417_1  [L=796]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   5.2e-104  346.7   7.4    2.8e-75  251.6   1.6    2.0  2  TIGR01652 ATPase-Plipid: phospholipid-translocating P-type ATPase, flippase
    3.4e-37  125.8   2.0    2.1e-20   70.4   0.2    2.4  2  TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC
    5.9e-14   48.4   0.1    9.7e-14   47.7   0.0    1.3  1  TIGR01657 P-ATPase-V: P-type ATPase of unknown pump specificity (type V)
      4e-10   36.3   0.0      3e-09   33.4   0.0    1.9  2  TIGR01517 ATPase-IIB_Ca: calcium-translocating P-type ATPase, PMCA-type
    2.1e-09   34.6   0.4    8.7e-07   26.0   0.0    2.3  2  TIGR01525 ATPase-IB_hvy: heavy metal translocating P-type ATPase
    1.5e-08   31.0   0.1    4.5e-05   19.6   0.0    2.1  2  TIGR01116 ATPase-IIA1_Ca: calcium-translocating P-type ATPase, SERCA-type
    1.9e-07   28.0   1.4    8.9e-05   19.2   0.0    2.2  2  TIGR01512 ATPase-IB2_Cd: cadmium-translocating P-type ATPase
    4.8e-07   27.4   0.6    1.2e-05   22.8   0.1    2.3  2  TIGR00338 serB: phosphoserine phosphatase SerB
    6.6e-07   25.3   0.1      0.002   13.8   0.0    2.1  2  TIGR01522 ATPase-IIA2_Ca: calcium-transporting P-type ATPase, PMR1-type
    8.7e-06   22.7   1.0    0.00021   18.1   0.0    2.2  2  TIGR01511 ATPase-IB1_Cu: copper-translocating P-type ATPase
      3e-05   19.9   1.5    0.00038   16.2   0.0    2.0  2  TIGR01106 ATPase-IIC_X-K: Na,H/K antiporter P-type ATPase, alpha subunit
    3.8e-05   19.3   0.2    0.00033   16.2   0.0    2.0  2  TIGR01523 ATPase-IID_K-Na: potassium/sodium efflux P-type ATPase, fungal-type
      5e-05   21.3   0.0    0.00087   17.2   0.0    2.3  2  TIGR01484 HAD-SF-IIB: HAD hydrolase, family IIB
    0.00045   17.7   0.1     0.0028   15.1   0.1    2.0  2  TIGR00099 Cof-subfamily: Cof-like hydrolase
     0.0012   14.8   0.1      0.012   11.5   0.0    2.2  2  TIGR01497 kdpB: K+-transporting ATPase, B subunit
  ------ inclusion threshold ------
      0.012   13.6   0.0        1.9    6.4   0.0    2.4  2  TIGR01662 HAD-SF-IIIA: HAD hydrolase, family IIIA
      0.037    9.7   0.7      0.097    8.3   0.0    1.8  2  TIGR01524 ATPase-IIIB_Mg: magnesium-translocating P-type ATPase
      0.038   11.1   0.0      0.075   10.2   0.0    1.4  1  TIGR01486 HAD-SF-IIB-MPGP: mannosyl-3-phosphoglycerate phosphatase family
      0.043    9.8   0.0       0.24    7.3   0.0    1.9  2  TIGR01647 ATPase-IIIA_H: plasma-membrane proton-efflux P-type ATPase


Domain annotation for each model (and alignments):
>> TIGR01652  ATPase-Plipid: phospholipid-translocating P-type ATPase, flippase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.0   0.2   3.2e-31   6.9e-29     573     704 ..       4     148 ..       1     159 [. 0.75
   2 !  251.6   1.6   1.3e-77   2.8e-75     695    1043 ..     214     572 ..     181     579 .. 0.89

  Alignments for each domain:
  == domain 1    score: 98.0 bits;  conditional E-value: 3.2e-31
   TIGR01652 573 GlRTLviarrelseeeYeewnekyeeA....st..........alk.dreekleevaeliEkeLellgaTaiEDkLqegVpetielLaeAgikiWvLTGDkvETAinigysckLlseemellvikeesldaleaveaaikkeleese 704
                  lRTLv a+rel e   +ew+ ky+eA    s           +++  +e+   e +e++E  L+l gaTaiEDkLq+gVpe ++ L+eAg kiW+LTGDkv TA ni+++c++l +e  +l i++e++  l+ v+ +   e++++ 
  MMETSP1137-20121227|1417_1   4 ALRTLVWAKRELPE--LDEWRAKYREAfnnpSEvaayksgepcLITqLQEQLXTELQEQLESGLTLQGATAIEDKLQDGVPEILADLREAGTKIWMLTGDKVGTAKNIACACNILPQEADVLEITTETFPVLADVKTTKLLEVQQTL 148
                 69*********975..3444444444422222211112222223443567777899***********************************************************************97777655555444444444 PP

  == domain 2    score: 251.6 bits;  conditional E-value: 1.3e-77
   TIGR01652  695 aikkeleeseeeleelkk..keklalviDGksLklaLkeelekeflelalkckavlcCRvsPsqKaavvklvkksl.skvtlaigdGaNDVsmiqeAdvGvGisGkEGkqAvmasDfaigqFrfLekLlLvHGrwsYkRisklilyffyknlilalilfwyslvnefsgqtlyeewllvlynvifTslPvivlGvldqdvsaslllkyPqLYkegikgkefsvkvflvwmldglyqslvifllallvlkleavvssGeved..llslgvivftalvvvvnlkialeierwnkisliaiagsilvvlifvivyseilp..........seefykaaarvlkslvfwlvllvvvlisllprftlka 1043
                  ++++ l++s ++++      ++  ++viD k +++       +++  ++ +c+av++CR    qKa++ +++k ++  ++ laigdGaNDV+mi++ ++GvGi GkEG++Av++sDfaigqFrfL  LlLvHGr +Y+R ++   ++fy+  ++++ lf ysl+ e sg  ly +++  ++ v++T l  iv  v dqdvs++ + + P+LY   i++  +    f+ w+ +++y ++++ +l+ +++   + ++ Ge ed   + l+ + + a+v+vv+ ++ale+++w+ ++++ +++sil+ ++   ++s  +p            ef    a +++ + fwl+l+++v+++l p  +l+ 
  MMETSP1137-20121227|1417_1  214 EVSR-LTASVNQVA---PdgNDVPCMVIDEKGIEYCATVC-GEVLTAVSNSCRAVVACRARKDQKAQMLNMIKFGVpGSCCLAIGDGANDVAMIKAGHIGVGIIGKEGMEAVNNSDFAIGQFRFLRGLLLVHGRQNYRRYATFCYFMFYQSSTMVFSLFLYSLLCEASGALLYPYFIFDFFTVFYTPLALIVFSVSDQDVSKEESAHTPHLYSASIQRVYLTSSGFARWLSEAFYLAVLLAYLPAAAYGWPEKTHMGEHEDpaWSALSFTAYNAMVIVVLSRLALEVHSWTVLEVACWTLSILALVVTNLMFSYWYPvpfptvpdsqWGEFNNILAIMYSQPAFWLCLVLIVFLALAPALILDW 572 
                  2222.333333333...2345778***********98776.899999***************************76368999**********************************************************************************************************************************************************************9988888896654225678889999**********************************9999998888889999997655899999999******************99988765 PP

>> TIGR01494  ATPase_P-type: HAD ATPase, P-type, family IC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.5   0.1   6.8e-18   1.5e-15     316     366 ..      66     116 ..      60     119 .. 0.94
   2 !   70.4   0.2   9.8e-23   2.1e-20     361     466 ..     260     372 ..     249     380 .. 0.86

  Alignments for each domain:
  == domain 1    score: 54.5 bits;  conditional E-value: 6.8e-18
   TIGR01494 316 ellGllaledplredvketieelkkagikvimlTGDnvetAkaiakelglf 366
                 +l+G++a+ed+l+++v+e+++ l++ag k++mlTGD+v tAk+ia +++++
  MMETSP1137-20121227|1417_1  66 TLQGATAIEDKLQDGVPEILADLREAGTKIWMLTGDKVGTAKNIACACNIL 116
                 799********************************************9985 PP

  == domain 2    score: 70.4 bits;  conditional E-value: 9.8e-23
   TIGR01494 361 kelglfarvsPeqKaeivellkk..kgevvamiGDGvNDapALkaAdVGia......isAkaaadivllddnlslvvlllkeGrktykrikklilylliknliliilllvlsvl 466
                  +  + +r   +qKa++++++k    g ++++iGDG+ND++++ka ++G++      ++A + +d+++ ++ ++l  lll++Gr++y r +++  ++++++ +++++l+++s+l
  MMETSP1137-20121227|1417_1 260 CRAVVACRARKDQKAQMLNMIKFgvPGSCCLAIGDGANDVAMIKAGHIGVGiigkegMEAVNNSDFAIGQF-RFLRGLLLVHGRQNYRRYATFCYFMFYQSSTMVFSLFLYSLL 372
                 333468****************622589**********************63333337999**********.**************************************9874 PP

>> TIGR01657  P-ATPase-V: P-type ATPase of unknown pump specificity (type V)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.7   0.0   4.5e-16   9.7e-14     640     832 ..      58     316 ..      42     378 .. 0.85

  Alignments for each domain:
  == domain 1    score: 47.7 bits;  conditional E-value: 4.5e-16
   TIGR01657 640 RdavEsnleflGllvlenklkpdtkevikeLkeasirvvmitGDnllTavsVarevgivekkk.tlilaeaeepekgksaqikfeskde.....................................................kiastkveqpvkekkds.lesllasryslalsGkalavlleksk..........ellkklllkvk..VfARvaPeqKeelvetlk..kldytvlmcGDGaNDcgALkqAdvGisLseaeA 832
                  +++Es l+++G   +e kl++   e++ +L+ea  ++ m tGD++ Ta ++a  ++i+ ++  +l +   + p   +++ +k  ++++                                                            ++ ++++ +s + +l as  ++a +G+ +  ++ ++k          e l  +   ++  V  R   +qK+++++ +k    + + l +GDGaND++ +k+ ++G+ +  +e+
  MMETSP1137-20121227|1417_1  58 QEQLESGLTLQGATAIEDKLQDGVPEILADLREAGTKIWMLTGDKVGTAKNIACACNILPQEAdVLEITTETFPVLADVKTTKLLEVQQtleasrpmptrlarlgarlgvrsklprlpheelhkqtaaldgefpgllevrhaL---IAFQKKLSDQMKSeVSRLTASVNQVAPDGNDVPCMVIDEKgieycatvcgEVLTAVSNSCRavVACRARKDQKAQMLNMIKfgVPGSCCLAIGDGANDVAMIKAGHIGVGIIGKEG 316
                 589********************************************************776514445555667888888888888877899*******************************************99996431...333444444444557777788888999999999999888899999999987777777666443677999********99983346999999******************9887765 PP

>> TIGR01517  ATPase-IIB_Ca: calcium-translocating P-type ATPase, PMCA-type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.4   0.0   1.4e-11     3e-09     526     592 ..      58     124 ..      44     153 .. 0.90
   2 ?    0.4   0.0      0.13        29     627     667 ..     287     327 ..     261     376 .. 0.72

  Alignments for each domain:
  == domain 1    score: 33.4 bits;  conditional E-value: 1.4e-11
   TIGR01517 526 kdspnkglvliavvGikdPvragvreavkkcqraGitvRmvtGDnlstakaiarecgiltagelale 592
                 +++ ++gl+l+++  i+d ++ gv+e  +  ++aG  + m tGD + tak+ia  c+il+++   le
  MMETSP1137-20121227|1417_1  58 QEQLESGLTLQGATAIEDKLQDGVPEILADLREAGTKIWMLTGDKVGTAKNIACACNILPQEADVLE 124
                 566789*****************************************************98765554 PP

  == domain 2    score: 0.4 bits;  conditional E-value: 0.13
   TIGR01517 627 evvavtGDGtnDaPaLkladvGfa.mgiaGtevakeasDiil 667
                       GDG+nD   +k   +G+  +g  G e a+++sD  +
  MMETSP1137-20121227|1417_1 287 SCCLAIGDGANDVAMIKAGHIGVGiIGKEGME-AVNNSDFAI 327
                 455567****************8624666665.788888766 PP

>> TIGR01525  ATPase-IB_hvy: heavy metal translocating P-type ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.0   0.0     4e-09   8.7e-07     377     426 ..      66     115 ..      29     123 .. 0.84
   2 !    6.5   0.1    0.0032       0.7     439     490 ..     273     326 ..     257     338 .. 0.74

  Alignments for each domain:
  == domain 1    score: 26.0 bits;  conditional E-value: 4e-09
   TIGR01525 377 ellglialeDelrpeakeaiaeLkkkgievvlltGDnrsaaeavAkelgi 426
                 +l+g+ a+eD+l++ + e++a+L+++g ++++ltGD+  +a+++A +  i
  MMETSP1137-20121227|1417_1  66 TLQGATAIEDKLQDGVPEILADLREAGTKIWMLTGDKVGTAKNIACACNI 115
                 7999*****************************************88776 PP

  == domain 2    score: 6.5 bits;  conditional E-value: 0.0032
   TIGR01525 439 Klakvkklqee.egkkvamvGDGiNDApALaaAdvGiamg.sgsdvaieaADvv 490
                 K++ ++ ++    g   + +GDG ND + ++a ++G+ +  +    a++ +D+ 
  MMETSP1137-20121227|1417_1 273 KAQMLNMIKFGvPGSCCLAIGDGANDVAMIKAGHIGVGIIgKEGMEAVNNSDFA 326
                 5555555554422335778******************98655555577777765 PP

>> TIGR01116  ATPase-IIA1_Ca: calcium-translocating P-type ATPase, SERCA-type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.0   2.1e-07   4.5e-05     449     506 ..      59     116 ..      50     146 .. 0.90
   2 !    9.4   0.0   0.00024     0.051     520     630 ..     260     373 ..     234     409 .. 0.82

  Alignments for each domain:
  == domain 1    score: 19.6 bits;  conditional E-value: 2.1e-07
   TIGR01116 449 vkeesklifiGvvglkdPPreevadaiekcreaGirvivitGdnketaeaiarriGil 506
                  + es l++ G  +++d  +  v + +++ reaG ++ ++tGd+ +ta+ ia    il
  MMETSP1137-20121227|1417_1  59 EQLESGLTLQGATAIEDKLQDGVPEILADLREAGTKIWMLTGDKVGTAKNIACACNIL 116
                 5679***********************************************9887776 PP

  == domain 2    score: 9.4 bits;  conditional E-value: 0.00024
   TIGR01116 520 kkalvfsrvePshklklvelkel...dqivamtGdGvndaPalkkadiGia.mGsGtevakeasdlvladdnfativkaveeGraiynnmkqfirylissniGevvsifltaalg 630
                  +a+v +r+   +k +++++ ++   +  +   GdG nd   +k  +iG+  +G     a + sd+ ++   f   +  v+ Gr  y+   +f  ++       v s+fl ++l 
  MMETSP1137-20121227|1417_1 260 CRAVVACRARKDQKAQMLNMIKFgvpGSCCLAIGDGANDVAMIKAGHIGVGiIGKEGMEAVNNSDFAIGQFRFLRGLLLVH-GRQNYRRYATFCYFMFYQSSTMVFSLFLYSLLC 373
                 467788888888887776655551116899999****************97358877889999******999998888776.99*********9999998889999999988774 PP

>> TIGR01512  ATPase-IB2_Cd: cadmium-translocating P-type ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   0.0   4.1e-07   8.9e-05     315     360 ..      66     110 ..      57     115 .. 0.92
   2 !    7.5   0.2    0.0015      0.31     388     420 ..     291     323 ..     271     334 .. 0.84

  Alignments for each domain:
  == domain 1    score: 19.2 bits;  conditional E-value: 4.1e-07
   TIGR01512 315 kllglialsDevredaaeaiaeLkklgvkklvlltGDreaaaekva 360
                 +l g+ a++D++++ + e++a+L+++g +k+ +ltGD+  +a+++a
  MMETSP1137-20121227|1417_1  66 TLQGATAIEDKLQDGVPEILADLREAG-TKIWMLTGDKVGTAKNIA 110
                 5678999********************.799*************99 PP

  == domain 2    score: 7.5 bits;  conditional E-value: 0.0015
   TIGR01512 388 mvGDGiNDapaLaaAdvgiam.GasgsdvaletA 420
                  +GDG ND   ++a+++g+ + G++g +++   +
  MMETSP1137-20121227|1417_1 291 AIGDGANDVAMIKAGHIGVGIiGKEGMEAVN-NS 323
                 69*****************953777776554.44 PP

>> TIGR00338  serB: phosphoserine phosphatase SerB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.0     0.092        20      85     118 ..      76     109 ..      55     151 .. 0.71
   2 !   22.8   0.1   5.6e-08   1.2e-05     152     201 ..     272     319 ..     231     332 .. 0.82

  Alignments for each domain:
  == domain 1    score: 2.5 bits;  conditional E-value: 0.092
   TIGR00338  85 elteGveelvkkLkekgykvaviSGgFdlvaekl 118
                 +l +Gv e+   L+e+g k+ ++ G     a+++
  MMETSP1137-20121227|1417_1  76 KLQDGVPEILADLREAGTKIWMLTGDKVGTAKNI 109
                 5789******************999765555555 PP

  == domain 2    score: 22.8 bits;  conditional E-value: 5.6e-08
   TIGR00338 152 akaktllkllekegislektvavGDGanDlsmikaAglgiafnakpvlke 201
                 +ka++l  +  k g++   ++a+GDGanD++mika ++g++  +k+ ++ 
  MMETSP1137-20121227|1417_1 272 QKAQMLNMI--KFGVPGSCCLAIGDGANDVAMIKAGHIGVGIIGKEGMEA 319
                 344444433..67899999**********************999987765 PP

>> TIGR01522  ATPase-IIA2_Ca: calcium-transporting P-type ATPase, PMR1-type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.0   9.1e-06     0.002     483     538 ..      59     114 ..      54     130 .. 0.90
   2 !    9.4   0.0    0.0002     0.043     564     633 ..     261     332 ..     198     374 .. 0.66

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 9.1e-06
   TIGR01522 483 sktekdlvfaGllGlndpprpdvkeaveklltgGvrvimitGdseetavsiarrlG 538
                 ++ e+ l+++G   + d  + +v+e +  l ++G ++ m+tGd + ta +ia    
  MMETSP1137-20121227|1417_1  59 EQLESGLTLQGATAIEDKLQDGVPEILADLREAGTKIWMLTGDKVGTAKNIACACN 114
                 567899*********************************************97655 PP

  == domain 2    score: 9.4 bits;  conditional E-value: 0.0002
   TIGR01522 564 kvavfaraspehklkivka..lqkrGdvvamtGdGvndapalkladiGva.mGrtGtdvakeaadmiltdddf 633
                 +++v  ra  ++k ++++   +   G+     GdG nd + +k+  iGv  +G++G + +   +d  + +  f
  MMETSP1137-20121227|1417_1 261 RAVVACRARKDQKAQMLNMikFGVPGSCCLAIGDGANDVAMIKAGHIGVGiIGKEGMEAVN-NSDFAIGQFRF 332
                 3455566666666666555005578999999******************736999988654.45665555555 PP

>> TIGR01511  ATPase-IB1_Cu: copper-translocating P-type ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.0   9.6e-07   0.00021     358     407 ..      65     114 ..      31     122 .. 0.84
   2 ?    2.8   0.3     0.043       9.3     430     454 ..     288     312 ..     209     328 .. 0.78

  Alignments for each domain:
  == domain 1    score: 18.1 bits;  conditional E-value: 9.6e-07
   TIGR01511 358 gelaavlaledelkpeakevieaLkkrgievvlltGDnekaakavAkelg 407
                  +l++++a+ed+l+  + e+++ L+++g ++++ltGD+  +ak++A +  
  MMETSP1137-20121227|1417_1  65 LTLQGATAIEDKLQDGVPEILADLREAGTKIWMLTGDKVGTAKNIACACN 114
                 4688999**************************************97765 PP

  == domain 2    score: 2.8 bits;  conditional E-value: 0.043
   TIGR01511 430 kvamvGDGiNDapaLaaadvgiaig 454
                   + +GDG ND   + a ++g+ i 
  MMETSP1137-20121227|1417_1 288 CCLAIGDGANDVAMIKAGHIGVGII 312
                 4678*****************9874 PP

>> TIGR01106  ATPase-IIC_X-K: Na,H/K antiporter P-type ATPase, alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0   1.8e-06   0.00038     555     616 ..      63     124 ..      51     138 .. 0.87
   2 ?    1.7   0.9     0.045       9.6     620     712 ..     216     316 ..     205     327 .. 0.69

  Alignments for each domain:
  == domain 1    score: 16.2 bits;  conditional E-value: 1.8e-06
   TIGR01106 555 enlcfvgllsmidppraavpdavgkcrsagikvimvtgdhpitakaiaksvgiisegnetve 616
                 ++l++ g  ++ d  +  vp+ ++  r ag k+ m+tgd+  tak ia +  i+ +++++ e
  MMETSP1137-20121227|1417_1  63 SGLTLQGATAIEDKLQDGVPEILADLREAGTKIWMLTGDKVGTAKNIACACNILPQEADVLE 124
                 67888888889999999************************************998888766 PP

  == domain 2    score: 1.7 bits;  conditional E-value: 0.045
   TIGR01106 620 arlnipveqvnk..rdakacvvh..gsdlk.dltseqldeilkehteivfartspqqkliivegcq..rqgaivavtgdgvndspalkkadigva.mgiag 712
                  rl  +v+qv +  +d    v++  g +    +  e l  + ++   +v  r+  +qk  +++  +    g+     gdg nd   +k   igv  +g  g
  MMETSP1137-20121227|1417_1 216 SRLTASVNQVAPdgNDVPCMVIDekGIEYCaTVCGEVLTAVSNSCRAVVACRARKDQKAQMLNMIKfgVPGSCCLAIGDGANDVAMIKAGHIGVGiIGKEG 316
                 68888888888754566666775224444313455667777777788888899999998777766522568888899****************95134444 PP

>> TIGR01523  ATPase-IID_K-Na: potassium/sodium efflux P-type ATPase, fungal-type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0   1.5e-06   0.00033     571     634 ..      55     118 ..      45     136 .. 0.85
   2 ?    0.5   0.1     0.081        18     670     729 ..     263     324 ..     242     343 .. 0.75

  Alignments for each domain:
  == domain 1    score: 16.2 bits;  conditional E-value: 1.5e-06
   TIGR01523 571 tlnrdvaesdlvflslvgiydpprteskgavkkfhragirvhmltgdfvetakaiarevgilpt 634
                 t  ++  es l + +   i d  ++     +  + +ag ++ mltgd v+tak ia    ilp 
  MMETSP1137-20121227|1417_1  55 TELQEQLESGLTLQGATAIEDKLQDGVPEILADLREAGTKIWMLTGDKVGTAKNIACACNILPQ 118
                 55566778888888888888888888888899999***************************97 PP

  == domain 2    score: 0.5 bits;  conditional E-value: 0.081
   TIGR01523 670 lviarcapqtkvkmiealhrr..kkfvamtgdgvndspslkqanvgia.mgingsdvakeasd 729
                 +v  r   + k +m++ ++       +   gdg nd   +k   +g+  +g++g +   + sd
  MMETSP1137-20121227|1417_1 263 VVACRARKDQKAQMLNMIKFGvpGSCCLAIGDGANDVAMIKAGHIGVGiIGKEGMEAV-NNSD 324
                 455566667777777776643114677889**************99962588777643.3455 PP

>> TIGR01484  HAD-SF-IIB: HAD hydrolase, family IIB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.0      0.27        59      16      44 ..      76     103 ..      66     120 .. 0.84
   2 !   17.2   0.0     4e-06   0.00087     173     220 ..     262     310 ..     212     311 .. 0.80

  Alignments for each domain:
  == domain 1    score: 1.4 bits;  conditional E-value: 0.27
   TIGR01484  16 elseelieaLerlrealgvkvvivTGRsl 44 
                 +l++ ++e L+ lrea g k++ +TG  +
  MMETSP1137-20121227|1417_1  76 KLQDGVPEILADLREA-GTKIWMLTGDKV 103
                 588999**********.9*******9665 PP

  == domain 2    score: 17.2 bits;  conditional E-value: 4e-06
   TIGR01484 173 evlpagvdKgkalqalleeln.lkkeeilafGDsgNDeemlevaglava 220
                  v+  ++ K + +q+l+   + ++ +++la+GD++ND++m+++++ +v 
  MMETSP1137-20121227|1417_1 262 AVVACRARKDQKAQMLNMIKFgVPGSCCLAIGDGANDVAMIKAGHIGVG 310
                 4444555566666666555555999*******************99885 PP

>> TIGR00099  Cof-subfamily: Cof-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.0      0.76   1.6e+02      16      49 ..      76     109 ..      72     117 .. 0.81
   2 !   15.1   0.1   1.3e-05    0.0028     196     229 ..     277     311 ..     252     322 .. 0.76

  Alignments for each domain:
  == domain 1    score: -0.5 bits;  conditional E-value: 0.76
   TIGR00099  16 eispetkealaklrekGikvvlaTGRsykevkei 49 
                 ++++ + e+la lre G k+  +TG +   +k+i
  MMETSP1137-20121227|1417_1  76 KLQDGVPEILADLREAGTKIWMLTGDKVGTAKNI 109
                 566777799****************887666666 PP

  == domain 2    score: 15.1 bits;  conditional E-value: 1.3e-05
   TIGR00099 196 lae.klgislenviaiGDseNDieMleaagvgvam 229
                 l+  k g+  + + aiGD+ ND++M++a  +gv  
  MMETSP1137-20121227|1417_1 277 LNMiKFGVPGSCCLAIGDGANDVAMIKAGHIGVGI 311
                 44446677778899*************99988754 PP

>> TIGR01497  kdpB: K+-transporting ATPase, B subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.5   0.0   5.6e-05     0.012     437     481 ..      67     111 ..      47     134 .. 0.87
   2 ?    0.3   0.0      0.13        29     608     640 ..     467     499 ..     424     513 .. 0.74

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 5.6e-05
   TIGR01497 437 iyGviylkdivksGikerfeqlrklGiktimltGdnrltaaviak 481
                 + G  ++ d ++ G+ e ++ lr+ G k  mltGd   ta  ia 
  MMETSP1137-20121227|1417_1  67 LQGATAIEDKLQDGVPEILADLREAGTKIWMLTGDKVGTAKNIAC 111
                 5788999*********************************99985 PP

  == domain 2    score: 0.3 bits;  conditional E-value: 0.13
   TIGR01497 608 lsspdsailsalifnaliipaliplalkGvkyr 640
                  + p  + ls   +na++i++l  lal   ++ 
  MMETSP1137-20121227|1417_1 467 HEDPAWSALSFTAYNAMVIVVLSRLALEVHSWT 499
                 455666789999**************9876665 PP

>> TIGR01662  HAD-SF-IIIA: HAD hydrolase, family IIIA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   0.0    0.0087       1.9      25      58 ..      76     108 ..      66     135 .. 0.83
   2 ?    4.5   0.0     0.035       7.5      87     129 ..     262     303 ..     241     310 .. 0.78

  Alignments for each domain:
  == domain 1    score: 6.4 bits;  conditional E-value: 0.0087
   TIGR01662  25 elypevidalaelkkeGykvvivtNqsgigrgke 58 
                 +l ++v+++la l+++G k+  +t+ + +g+ k+
  MMETSP1137-20121227|1417_1  76 KLQDGVPEILADLREAGTKIWMLTGDK-VGTAKN 108
                 56799*********************9.888773 PP

  == domain 2    score: 4.5 bits;  conditional E-value: 0.035
   TIGR01662  87 s..kceyrKpktgmleealkrlneidakesvvvGDavltDleaak 129
                 +   c +rK +   +++++k    +  + ++ +GD   +D+ ++k
  MMETSP1137-20121227|1417_1 262 AvvACRARKDQKAQMLNMIKFG--VPGSCCLAIGD-GANDVAMIK 303
                 134688****999999999865..99*********.779998886 PP

>> TIGR01524  ATPase-IIIB_Mg: magnesium-translocating P-type ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   0.0   0.00045     0.097     493     551 ..      54     112 ..      44     158 .. 0.80
   2 ?   -1.5   0.1      0.39        85     581     627 ..     263     311 ..     201     321 .. 0.73

  Alignments for each domain:
  == domain 1    score: 8.3 bits;  conditional E-value: 0.00045
   TIGR01524 493 eadlskedeeeliieGflafldppkestkkaiaalkkngiavkvltGdnevvtaricle 551
                  ++l+++ e+ l+++G  a  d  ++   + +a l+++g ++ +ltGd+   +++i   
  MMETSP1137-20121227|1417_1  54 XTELQEQLESGLTLQGATAIEDKLQDGVPEILADLREAGTKIWMLTGDKVGTAKNIACA 112
                 56789999****************************************98777777443 PP

  == domain 2    score: -1.5 bits;  conditional E-value: 0.39
   TIGR01524 581 avfarltplqkerivtllk..keGhtvGflGdGindapalrkadvGisv 627
                  v  r    qk ++++++k    G     +GdG nd   +++  +G+ +
  MMETSP1137-20121227|1417_1 263 VVACRARKDQKAQMLNMIKfgVPGSCCLAIGDGANDVAMIKAGHIGVGI 311
                 444455566777777777722357778889*******999999999876 PP

>> TIGR01486  HAD-SF-IIB-MPGP: mannosyl-3-phosphoglycerate phosphatase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   0.00035     0.075     157     226 ..     251     317 ..     191     327 .. 0.71

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 0.00035
   TIGR01486 157 elglevvkgarfyhvlgaesdKGkAvnalkqlykekekaikvvglGDspnDlpllevvdlavvvkgkdge 226
                 e+ ++v +  r +++    + K++ +++l             +++GD+ nD+ +++++ + v + gk+g 
  MMETSP1137-20121227|1417_1 251 EVLTAVSNSCRAVVA--CRARKDQKAQMLNMIKFG-VPGSCCLAIGDGANDVAMIKAGHIGVGIIGKEGM 317
                 444444444444444..456666665555443333.2356899*****************9999888765 PP

>> TIGR01647  ATPase-IIIA_H: plasma-membrane proton-efflux P-type ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   0.0    0.0011      0.24     435     481 ..      69     115 ..      57     145 .. 0.82
   2 ?   -0.3   0.0      0.23        49     540     561 ..     292     313 ..     285     373 .. 0.90

  Alignments for each domain:
  == domain 1    score: 7.3 bits;  conditional E-value: 0.0011
   TIGR01647 435 gllpllDPPreDtketierakelgvevkmvtGDhlaiaketarrlgl 481
                 g  ++ D  ++   e +   +e g ++ m+tGD++  ak++a   ++
  MMETSP1137-20121227|1417_1  69 GATAIEDKLQDGVPEILADLREAGTKIWMLTGDKVGTAKNIACACNI 115
                 555566666667778888999********************977665 PP

  == domain 2    score: -0.3 bits;  conditional E-value: 0.23
   TIGR01647 540 tGDGvnDaPaLkkAdvGiAvag 561
                  GDG+nD+  +k   +G+ + g
  MMETSP1137-20121227|1417_1 292 IGDGANDVAMIKAGHIGVGIIG 313
                 6***************998755 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (796 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       198  (0.0482691); expected 82.0 (0.02)
Passed bias filter:                      132  (0.0321794); expected 82.0 (0.02)
Passed Vit filter:                        33  (0.00804486); expected 4.1 (0.001)
Passed Fwd filter:                        19  (0.00463189); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              19  [number of targets reported over threshold]
# CPU time: 0.87u 0.20s 00:00:01.07 Elapsed: 00:00:00.80
# Mc/sec: 1313.29
//
Query:       MMETSP1137-20121227|1418_1  [L=344]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (344 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       102  (0.0248659); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.16s 00:00:00.43 Elapsed: 00:00:00.38
# Mc/sec: 1194.85
//
Query:       MMETSP1137-20121227|1419_1  [L=159]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00016   19.7   4.5    0.00022   19.2   3.1    1.2  1  TIGR00880 2_A_01_02: multidrug resistance protein
    0.00028   18.2   0.6    0.00034   17.9   0.4    1.2  1  TIGR00900 2A0121: H+ Antiporter protein


Domain annotation for each model (and alignments):
>> TIGR00880  2_A_01_02: multidrug resistance protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   3.1   1.1e-07   0.00022      51     134 ..      36     122 ..      31     135 .. 0.82

  Alignments for each domain:
  == domain 1    score: 19.2 bits;  conditional E-value: 1.1e-07
   TIGR00880  51 itvliiarilqGfgaaaalvagaaliadiikeeersvalgllsagialgpilGpllGavla...qalgwralflilallallafill 134
                 ++vl+   + q +++a++++++  +i   +++e+r+++ gl +++ +    +Gp lGavl+   +  gw+++ + + ++ +l+++l+
  MMETSP1137-20121227|1419_1  36 LAVLMAHYAAQRCIGATCFTSIFLVINNSSTREYRGRVNGLNMSVSSGFKAVGPTLGAVLFawsMTNGWSIPPFNVYFTFILSAVLM 122
                 578899999999*************************************************66555688876665555555555543 PP

>> TIGR00900  2A0121: H+ Antiporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.4   1.7e-07   0.00034     126     175 ..      71     123 ..      31     136 .. 0.77

  Alignments for each domain:
  == domain 1    score: 17.9 bits;  conditional E-value: 1.7e-07
   TIGR00900 126 translsqlvrslieivgPgiggllvatlgikaai...lvdavgflisalliv 175
                  r+n+l+++v+s ++ vgP +g++l a+ +++      +    +f++sa+l+ 
  MMETSP1137-20121227|1419_1  71 GRVNGLNMSVSSGFKAVGPTLGAVLFAWSMTNGWSippFNVYFTFILSAVLMG 123
                 48999999999999999999999999999988554122345578888888875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (159 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       101  (0.0246221); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.18u 0.14s 00:00:00.32 Elapsed: 00:00:00.33
# Mc/sec: 635.95
//
Query:       MMETSP1137-20121227|1420_1  [L=449]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (449 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       780  (0.190151); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.72u 0.16s 00:00:00.88 Elapsed: 00:00:00.72
# Mc/sec: 823.10
//
Query:       MMETSP1137-20121227|1421_1  [L=160]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (160 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       176  (0.0429059); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.13s 00:00:00.29 Elapsed: 00:00:00.30
# Mc/sec: 703.94
//
Query:       MMETSP1137-20121227|1423_1  [L=153]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (153 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       125  (0.0304729); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.17s 00:00:00.33 Elapsed: 00:00:00.30
# Mc/sec: 673.14
//
Query:       MMETSP1137-20121227|1424_1  [L=418]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (418 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       120  (0.029254); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.16s 00:00:00.49 Elapsed: 00:00:00.31
# Mc/sec: 1779.72
//
Query:       MMETSP1137-20121227|1425_1  [L=1168]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.2e-15   52.2   0.1    3.8e-14   50.1   0.1    1.9  1  TIGR01988 Ubi-OHases: ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family
    2.9e-08   30.7   0.0    5.5e-08   29.9   0.0    1.3  1  TIGR02360 pbenz_hydroxyl: 4-hydroxybenzoate 3-monooxygenase
    1.5e-07   28.4   0.0    1.8e-06   24.8   0.0    2.1  1  TIGR01984 UbiH: 2-polyprenyl-6-methoxyphenol 4-hydroxylase
    5.2e-06   23.5   0.2    1.6e-05   21.9   0.1    1.7  2  TIGR01989 COQ6: ubiquinone biosynthesis monooxygenase COQ6
    0.00017   18.2   0.0    0.00039   17.0   0.0    1.6  1  TIGR03219 salicylate_mono: salicylate 1-monooxygenase


Domain annotation for each model (and alignments):
>> TIGR01988  Ubi-OHases: ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.1   0.1   4.7e-17   3.8e-14     149     341 ..     139     334 ..      61     344 .. 0.84

  Alignments for each domain:
  == domain 1    score: 50.1 bits;  conditional E-value: 4.7e-17
   TIGR01988 149 getleakLlvgADGanSkvrqaagikttewnyeqsavvanvkleeph....qdtAwerFlpegplAlLPlkdnrsslVwslsp...eeaeellalseeeflaelnaafgsrlgaitlvgeraafPLslthakryvaervaliGdAAhtvhPlAGQGlNlGlrDvaaLaevlaeavergedigslavLkrYererradnaa 341
                 +  l a+ l ++DGa+S vr+a+g++ ++ +  q+   +++++ e       + A+ +F  ++    + ++ n s+  w+++     + e+  + +e+e  + + a +g +    + v + ++++++++ a+r+    v ++GdAAh++ P ++ G N Gl+D+++L   la+ verg   +s+++L+ Y++err+  +a
  MMETSP1137-20121227|1425_1 139 ELSLDASALLACDGAHSSVRHALGVHLDGPPPLQHFYSVHFRAPELAprlrGKEAMLHFVFNRDAVAVMVAHNVSEGEWVAQLpffPRLERAERFDEAECARLIRACIGDES-IAVDVRSVKRWAMNARVAQRMSVGSVFFVGDAAHQFPPAGAFGANTGLQDAHNLCWKLAA-VERG--EASSSLLNSYDAERRPVSLA 334
                 44589999**************************999999988665543445667777877776666668889999999988622247777888888888888887777755.57888999**************************************************96.5666..4789**********986655 PP

>> TIGR02360  pbenz_hydroxyl: 4-hydroxybenzoate 3-monooxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.9   0.0   6.7e-11   5.5e-08     244     330 ..     230     326 ..     201     331 .. 0.79

  Alignments for each domain:
  == domain 1    score: 29.9 bits;  conditional E-value: 6.7e-11
   TIGR02360 244 krrldeeaaeklvtgpsieksia.........plrsfvaepmryGrlflaGdaahivpptGakGlnlaasdvaylyealleayk.ekdsaglerysa 330
                  +r+de  +++l+++   + sia          +++ va+ m+ G +f++Gdaah  pp+Ga G n+   d + l   l +  + e +s+ l++y a
  MMETSP1137-20121227|1425_1 230 AERFDEAECARLIRACIGDESIAvdvrsvkrwAMNARVAQRMSVGSVFFVGDAAHQFPPAGAFGANTGLQDAHNLCWKLAAVERgEASSSLLNSYDA 326
                 468999999999999988888884222222222445699************************************9999887652666777888865 PP

>> TIGR01984  UbiH: 2-polyprenyl-6-methoxyphenol 4-hydroxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.8   0.0   2.2e-09   1.8e-06     140     331 ..     133     329 ..     117     332 .. 0.78

  Alignments for each domain:
  == domain 1    score: 24.8 bits;  conditional E-value: 2.2e-09
   TIGR01984 140 evkldneqkleakLlvaAdGanskvreslsiaeeevdyeqtalianvkv....ekphenlAfErF.teeGplAlLPlkdayrlslvwclkk.eqaeelanlsdaeflaeLqkafgerlGkitqvgerkaypLklviaeeqvkervvlignaAqtlhPiAgQGfNlGlrDvltLaevledarkdlGeaallqeylkerk 331
                  v+++ e +l+a+ l a+dGa+s vr++l ++    +  q     + ++     +   + A+ +F ++  ++A++  ++  +   v  l+   + e+ ++ ++ae  + +++  g +  + ++v   k++++++++a++    +v ++g+aA+   P ++ G N Gl+D+ +L   l++ ++   ++ ll+ y +er+
  MMETSP1137-20121227|1425_1 133 GVNAAAELSLDASALLACDGAHSSVRHALGVHLDGPPPLQHFYSVHFRApelaPRLRGKEAMLHFvFNRDAVAVMVAHNVSEGEWVAQLPFfPRLERAERFDEAECARLIRACIGDESIA-VDVRSVKRWAMNARVAQRMSVGSVFFVGDAAHQFPPAGAFGANTGLQDAHNLCWKLAAVERGEASSSLLNSYDAERR 329
                 566777778999999999999999999999998866555555555555411104445677898984478899999888886666666665324677778889999777777778877655.56778899************************************************999888888999999999986 PP

>> TIGR01989  COQ6: ubiquinone biosynthesis monooxygenase COQ6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0      0.32   2.6e+02     173     192 ..     145     164 ..     134     167 .. 0.81
   2 !   21.9   0.1     2e-08   1.6e-05     334     395 ..     275     333 ..     250     355 .. 0.82

  Alignments for each domain:
  == domain 1    score: -1.9 bits;  conditional E-value: 0.32
   TIGR01989 173 klliGADGanSkvRkaanik 192
                   l+  DGa S vR+a +++
  MMETSP1137-20121227|1425_1 145 SALLACDGAHSSVRHALGVH 164
                 557789**********9987 PP

  == domain 2    score: 21.9 bits;  conditional E-value: 2e-08
   TIGR01989 334 rvALvGDAAHrvHPLAGqGvNlGfsDvesLvkalaeavkeGadlGsvssLkkyererkakNv 395
                  v  vGDAAH+  P    G N+G++D++ L   la av++G    s+s+L++y++er+   +
  MMETSP1137-20121227|1425_1 275 SVFFVGDAAHQFPPAGAFGANTGLQDAHNLCWKLA-AVERGEA--SSSLLNSYDAERRPVSL 333
                 5678********999999****************7.89***95..8999*******987554 PP

>> TIGR03219  salicylate_mono: salicylate 1-monooxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.0   4.8e-07   0.00039     297     358 ..     271     331 ..     200     341 .. 0.72

  Alignments for each domain:
  == domain 1    score: 17.0 bits;  conditional E-value: 4.8e-07
   TIGR03219 297 yvhGrvaliGdaahamlphqGaGaGqGledayllarlledtkleaedlpellevyddvrrer 358
                    G v ++Gdaah   p    Ga  Gl+da+ l   l   +   e  ++ll+ yd+ rr+ 
  MMETSP1137-20121227|1425_1 271 MSVGSVFFVGDAAHQFPPAGAFGANTGLQDAHNLCWKLAAVER-GEASSSLLNSYDAERRPV 331
                 44799**********9999999************998877654.4567899******99985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1168 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       114  (0.0277913); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.73u 0.14s 00:00:00.87 Elapsed: 00:00:00.48
# Mc/sec: 3211.73
//
Query:       MMETSP1137-20121227|1426_1  [L=387]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   3.4e-103  342.9   0.2     4e-103  342.7   0.1    1.0  1  TIGR01181 dTDP_gluc_dehyt: dTDP-glucose 4,6-dehydratase
    3.6e-43  145.6   0.0    4.3e-43  145.3   0.0    1.1  1  TIGR04180 EDH_00030: NAD dependent epimerase/dehydratase, LLPSF_EDH_00030 family
    3.2e-37  125.9   0.5    3.3e-36  122.6   0.3    1.9  1  TIGR01179 galE: UDP-glucose 4-epimerase
    5.7e-28   95.9   0.0    9.4e-28   95.2   0.0    1.3  1  TIGR02622 CDP_4_6_dhtase: CDP-glucose 4,6-dehydratase
    1.9e-26   90.8   0.0    4.6e-26   89.5   0.0    1.6  1  TIGR02197 heptose_epim: ADP-glyceromanno-heptose 6-epimerase
    1.5e-16   58.2   0.8    1.7e-16   58.0   0.0    1.4  2  TIGR01214 rmlD: dTDP-4-dehydrorhamnose reductase
    3.9e-15   53.4   0.1    2.8e-14   50.5   0.0    1.9  2  TIGR03466 HpnA: hopanoid-associated sugar epimerase
    6.1e-13   46.6   0.0    1.1e-09   35.9   0.0    2.1  2  TIGR01746 Thioester-redct: thioester reductase domain
    1.5e-11   41.7   0.2    2.9e-11   40.7   0.2    1.6  1  TIGR03589 PseB: UDP-N-acetylglucosamine 4,6-dehydratase
    2.5e-10   37.9   0.2    4.2e-10   37.2   0.0    1.5  2  TIGR01472 gmd: GDP-mannose 4,6-dehydratase
      2e-06   24.7   0.1    4.5e-06   23.6   0.1    1.4  2  TIGR04130 FnlA: UDP-N-acetylglucosamine 4,6-dehydratase/5-epimerase
    0.00044   17.7   0.0     0.0031   14.9   0.0    2.1  1  TIGR01777 yfcH: TIGR01777 family protein


Domain annotation for each model (and alignments):
>> TIGR01181  dTDP_gluc_dehyt: dTDP-glucose 4,6-dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  342.7   0.1  1.2e-105    4e-103       1     318 [.      37     357 ..      37     359 .. 0.96

  Alignments for each domain:
  == domain 1    score: 342.7 bits;  conditional E-value: 1.2e-105
   TIGR01181   1 klLvtGGaGfiGsnfvryileetpdaevvvlDkLtyagnkenlkdledeerysfvkgdiadrelverllkeedvdavvnfaaeshvDrsisepeafietnvvGtytlleavrkelkevrllhistDevyGdlekddaeftettplaPssPysaskaasdllvrayartyglpvlitrcsnnyGpyqfpekliPllitnalagkklpvyGdGqqvrDwlyveDhcraielvlekgrvgevyniggeeertnlevvkiilelldk....dedlieyvedrpGhDrryaldaskikreLgwkpkvtfeeglrktvkWylene.sww 318
                 ++LvtGGaGfi s +v  ++++ p+++vv lDk+ y++ ++nl ++++ ++y+f+kg+i  ++l++ +l++e++d++++ aa++hvD+s  ++ af+e nv+Gt++lle++++ +   r++h+stDevyG+  +d+ +  e + l+P++Py+a+kaa++ + r+y  ++++pv++tr+ n yGp+q+pek+iP+++++ ++ ++  ++GdG++ r ++yv D + a +++l+ g +gevynig + e+tnlev + +++ ++      +dlieyv drp +D+ry +d++k++  Lgwkp v+feegl+ktv+Wy++ + +ww
  MMETSP1137-20121227|1426_1  37 NILVTGGAGFIASHVVIRLVKSYPQYKVVCLDKIDYCSSLHNLDEVANYPNYKFIKGNILSADLIKYVLDTEKIDTILHAAAQTHVDNSFGNSFAFTENNVLGTHVLLESAKS-IGIRRFIHVSTDEVYGSSYQDEPSRREGDVLEPTNPYAATKAAAEAIARSYWFSFKMPVIVTRGNNVYGPHQYPEKVIPKFVRRLVKEQPCCIHGDGSNSRHFIYVGDVAAAFDTILHSGVDGEVYNIGCDDEHTNLEVARKLVRAVHPdraeGDDLIEYVPDRPFNDVRYYIDSTKLH-ALGWKPVVSFEEGLAKTVEWYKKVSaDWW 357
                 58*************************************************************************************************************99.45556*****************88*************************************************************************************************************************99865555789**********************9.9********************98651565 PP

>> TIGR04180  EDH_00030: NAD dependent epimerase/dehydratase, LLPSF_EDH_00030 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  145.3   0.0   1.3e-45   4.3e-43       1     257 [.      38     297 ..      38     336 .. 0.88

  Alignments for each domain:
  == domain 1    score: 145.3 bits;  conditional E-value: 1.3e-45
   TIGR04180   1 vlvtGadGfiGshlvealvek..GaevralvlynsfnswGwldevekevkkeievvlGdirdaesvkkav..kgvdvvfhlaaliaiPysyvapesyvetnvkGtlnvlqaardlevekvvhtstsevyGta.qyvPi.dekhplqaqsPysaskigadqlalsfyrsfelPvaivrPfntyGPrqsaraviPtiitqilsgkkkiklGslsPtrdfnyvkdtvegfiavaesdkavGevinigsnfeisigdtvkliaeilg 257
                 +lvtG  Gfi sh+v +lv++   ++v  l + +  +s   ldev+     + + ++G+i  a+ +k ++  +++d+++h aa   +  s+  + ++ e nv Gt  +l++a+ +++++++h st evyG++ q  P   e   l++  Py+a+k +a+++a s++ sf++Pv++ r  n yGP q    viP  + ++++ +     G+ s +r f yv d++++f ++ +s  + Gev nig + e +  ++++++ ++++
  MMETSP1137-20121227|1426_1  38 ILVTGGAGFIASHVVIRLVKSypQYKVVCLDKIDYCSSLHNLDEVA--NYPNYKFIKGNILSADLIKYVLdtEKIDTILHAAAQTHVDNSFGNSFAFTENNVLGTHVLLESAKSIGIRRFIHVSTDEVYGSSyQDEPSrREGDVLEPTNPYAATKAAAEAIARSYWFSFKMPVIVTRGNNVYGPHQYPEKVIPKFVRRLVKEQPCCIHGDGSNSRHFIYVGDVAAAFDTILHS-GVDGEVYNIGCDDEHTNLEVARKLVRAVH 297
                 79******************83346777777788888899999998..678899************998622679*******************************************************973566762577889***********************************************************************************99987.577*********99988888887777665 PP

>> TIGR01179  galE: UDP-glucose 4-epimerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  122.6   0.3   9.7e-39   3.3e-36       1     328 [.      37     352 ..      37     355 .. 0.85

  Alignments for each domain:
  == domain 1    score: 122.6 bits;  conditional E-value: 9.7e-39
   TIGR01179   1 kiLvtGgaGyiGshvvrqllek..gkevvvlDnlsk.gskealkalekitevklvegdladkekleavleeekidaviHfaaliavgEsvkePlkYYennvvntleLleamqkagvkkliFsssaavYges..ekvpisEesplnpinpYGrsklmvErilkdlkkadkelkvviLRYFnvaGAdeegeiGeasknathliklvaevavgkrekleifGtdyptkDGtcvRDyiHveDlaeaHlaalealeeggesevynlGagqgfsvkevieav......kkvsgkdikveladrRaGDpaslvadaskikrelgwkpkyddLeeiiksawdWekkl 328
                 +iLvtGgaG+i shvv  l ++  +++vv lD +   +s + l ++ ++ + k+++g++  +  ++ vl++ekid+++H aa+++v +s  +   + ennv +t +Lle+ +++g++++i  s+  vYg+s  ++ +  E   l+p+npY ++k+++E i + +  +  ++ v++ R  nv G ++            ++i+  ++  v k++   i+G      DG   R +i+v D+a+a  +    l++g + evyn+G +  +  +ev +++      +++ g d+   + dr   D+  ++ d+ k  + lgwkp     ee ++++ +W kk 
  MMETSP1137-20121227|1426_1  37 NILVTGGAGFIASHVVIRLVKSypQYKVVCLDKIDYcSSLHNLDEVANYPNYKFIKGNILSADLIKYVLDTEKIDTILHAAAQTHVDNSFGNSFAFTENNVLGTHVLLESAKSIGIRRFIHVSTDEVYGSSyqDEPSRREGDVLEPTNPYAATKAAAEAIARSYWFS-FKMPVIVTRGNNVYGPHQY---------PEKVIPKFVRRLV-KEQPCCIHG------DGSNSRHFIYVGDVAAAFDT---ILHSGVDGEVYNIGCDDEHTNLEVARKLvravhpDRAEGDDLIEYVPDRPFNDVRYYI-DSTK-LHALGWKPVVS-FEEGLAKTVEWYKKV 352
                 59*****************99844688*****997625567899999888*******************************************************************************862255678899999********************888.99*************8753.........3356777666666.78899***9......89999**********98764...56788999*********99999887664111122355677877777777777776665.5555.4689****999.999999999999876 PP

>> TIGR02622  CDP_4_6_dhtase: CDP-glucose 4,6-dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.2   0.0   2.7e-30   9.4e-28       2     333 ..      33     352 ..      32     361 .. 0.81

  Alignments for each domain:
  == domain 1    score: 95.2 bits;  conditional E-value: 2.7e-30
   TIGR02622   2 wkgkkvlvtGhtGfkGsWlslwLkelGaevaGysldpetk.pnlfellklakklkdssvlgdirdaeklekaieevkPeivfhlaaqplvrksYkdPletfetnvlGtvnlleavralesvkavvlvtsDkvYenk.ewvwgyretdalGGhDpYsaskaaaelvvasyrksflkeankekikiasaRaGnviGGGDwaedRlvpDviralssnkaveiRnpka.vrPWqhvLepLsGYlllaeklledeaelaeafnfGPeaeenk.kvvelvkkalellagkkaeiekksdkeapheaklLkLdsdkakkklgwkprlsleeaveatveWykea 333
                 ++ +++lvtG  Gf  s +++ L +   + +   ld      +l++l ++a+  + + + g+i  a+ ++ ++++ k + ++h aaq+ v +s+ + +   e nvlGt  lle+++++  ++  + v +D vY  + +   + re d+l   +pY+a kaaae +++sy+ sf          + ++R+ nv G   +  ++++p  +r l +++   i    +  r + +v +  + +    + +l++  +  e +n+G ++e+++ +v + + +a++   ++   + +   ++ +++ +   +ds+k  + lgwkp  s+ee + +tveWyk++
  MMETSP1137-20121227|1426_1  33 YTPTNILVTGGAGFIASHVVIRLVKSYPQYKVVCLDKIDYcSSLHNLDEVANYPNYKFIKGNILSADLIKYVLDTEKIDTILHAAAQTHVDNSFGNSFAFTENNVLGTHVLLESAKSIG-IRRFIHVSTDEVYGSSyQDEPSRREGDVLEPTNPYAATKAAAEAIARSYWFSFKM-------PVIVTRGNNVYGPHQYP-EKVIPKFVRRLVKEQPCCIHGDGSnSRHFIYVGDVAAAF----DTILHSGVD-GEVYNIGCDDEHTNlEVARKLVRAVHPDRAEGDDLIEYVPDRPFNDVR-YYIDSTK-LHALGWKPVVSFEEGLAKTVEWYKKV 352
                 66789**********************99999999977651667888888888888999**********************************************************99.8899*********98746677889****************************965.......67899*99999999986.68*****************98766257777776666554....445555555.469****99865441444444444444333333333333324444444.4577776.468*********************75 PP

>> TIGR02197  heptose_epim: ADP-glyceromanno-heptose 6-epimerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.5   0.0   1.4e-28   4.6e-26       1     315 [.      38     351 ..      38     352 .. 0.79

  Alignments for each domain:
  == domain 1    score: 89.5 bits;  conditional E-value: 1.4e-28
   TIGR02197   1 iivTGgaGfiGsnlvaalnekg.etdilvvDklrkgekllnlkd...eeiadyidkeellerleke..elkkveavfHegAisdTtel..dgellmenNyeyskellelcaekev.kliYASSAavYGdsee..efreekelerPlNvYgySKllfDelvrkevlkekksaqvvGlryFNVyGprEehKgkmaSvvfklfnqikkekkvkLFksseqlkdGeqlRDFvyvkDvvkvnllllekkeksGifnvGtgkarsfndlaaavvkalgkde.....kieyidmPealrgkyqkfTqadleklreagykkeflsleegvkdYvkella 315
                 i+vTGgaGfi s +v +l ++  + +++ +Dk+   + l nl++      +++i+ + l   l k   +++k+++++H +A ++  +   +     enN+  ++ lle +++ ++ ++i  S   vYG+s +  + r e ++ +P N Y+  K+  + ++r   ++ k    v+  r  NVyGp+ +  +    v+ k+++++ ke+   +        dG ++R F+yv Dv+ +  ++l++     ++n+G    ++  ++a  +v+a++ d+      iey++  ++  +   ++   d +kl +a+  k+++s eeg+++ v+++++
  MMETSP1137-20121227|1426_1  38 ILVTGGAGFIASHVVIRLVKSYpQYKVVCLDKIDYCSSLHNLDEvanYPNYKFIKGNILSADLIKYvlDTEKIDTILHAAAQTHVDNSfgNSFAFTENNVLGTHVLLESAKSIGIrRFIHVSTDEVYGSSYQdePSRREGDVLEPTNPYAATKAAAEAIARSYWFSFKM--PVIVTRGNNVYGPHQYP-E---KVIPKFVRRLVKEQPCCIHG------DGSNSRHFIYVGDVAAAFDTILHSGVDGEVYNIGCDDEHTNLEVARKLVRAVHPDRaegddLIEYVP--DRPFNDVRYYI--DSTKL-HALGWKPVVSFEEGLAKTVEWYKK 351
                 89*****************999899********99776666554111455677777766666666556689**********987766522555678999*************998469**********8654114455555569****************977755544..58899********9654.3...47888888888888777654......56667*******************88888*********************99944445666999984..44444666665..55677.556678999999999999999975 PP

>> TIGR01214  rmlD: dTDP-4-dehydrorhamnose reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.1       2.7   9.3e+02     235     254 ..       7      26 ..       3      28 .. 0.81
   2 !   58.0   0.0     5e-19   1.7e-16       2     227 ..      38     297 ..      37     312 .. 0.88

  Alignments for each domain:
  == domain 1    score: -3.5 bits;  conditional E-value: 2.7
   TIGR01214 235 veevkpisskeyptpArRpa 254
                 +  v p ++ +y+ + rRp 
  MMETSP1137-20121227|1426_1   7 TAMVAPAAADKYNPAVRRPT 26 
                 55789999999999999996 PP

  == domain 2    score: 58.0 bits;  conditional E-value: 5e-19
   TIGR01214   2 ilitGakgqlgreLveqlsk..egsevvaltrs.....................qldledpealeellreikPdvvvntaAytdVDkaEseaekayavNalatenlAraaarvga.llvhiSTDYvFDG..ekkrpYreedetnPlnvYgqsKlaGEvavraase....kalivRtswlygasgg.rnFvktmlrlakereelkvvadQigsP..Tyakdlaevlaaller.eargvyHlanegqvSwyefaqaifevle 227
                 il+tG++g ++++ v +l k  ++ +vv+l++                      + ++  ++ ++ +l+ +k d+++++aA t+VD++  +  +  + N+l+t++l + a+ +g+ +++h+STD v+    +++   re d+  P n Y+++K a E ++r++       +++ R   +yg +   +  +   +r++ ++++  +  d   s    y+ d+a++   +l++     vy + ++ +   +e a++++ +++
  MMETSP1137-20121227|1426_1  38 ILVTGGAGFIASHVVIRLVKsyPQYKVVCLDKIdycsslhnldevanypnykfiKGNILSADLIKYVLDTEKIDTILHAAAQTHVDNSFGNSFAFTENNVLGTHVLLESAKSIGIrRFIHVSTDEVYGSsyQDEPSRREGDVLEPTNPYAATKAAAEAIARSYWFsfkmPVIVTRGNNVYGPHQYpEKVIPKFVRRLVKEQPCCIHGDGSNSRhfIYVGDVAAAFDTILHSgVDGEVYNIGCDDEHTNLEVARKLVRAVH 297
                 9***************999856667788888879******************************************************99998888999***************8459*********8765666677899*********************98653434677889******997668888888999999999999999988863368999*****999998778889**999999999999999887765 PP

>> TIGR03466  HpnA: hopanoid-associated sugar epimerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.5   0.0   8.3e-17   2.8e-14       2     232 ..      37     281 ..      36     297 .. 0.81
   2 ?    0.6   0.0      0.13        44     292     323 ..     320     351 ..     315     354 .. 0.79

  Alignments for each domain:
  == domain 1    score: 50.5 bits;  conditional E-value: 8.3e-17
   TIGR03466   2 kvlvtGatGFvGsavvrllleeGeevrvlvrkt....sdrrnleel....dvEiveGdlkdeaslkkal..kGcealfHvAAdyrlwak..dpeelykanvegtravleaAleagvervvytssvatlgvkedgkeadettpsklekmiGhYkrskflAEqaveelaae.glpvvivnPstPiGprDikptPtgriivdalkrkmPayvd.tgLn...lvdvddvaegHllAlerGriGerYiLGgen 232
                 + lvtG++GF+ s+vv  l+++  + +v+  ++    s+ +nl+e+    +   ++G++ +++ +k  l  + +++++H AA++++     ++ +++++nv gt+ +le A++ g++r ++ s+  + g + + +++ ++  + +     +Y  +k  AE ++++   + ++pv++       Gp+        + + + +k++ P  +   g n   ++ v dva++  + l+ G  Ge Y +G ++
  MMETSP1137-20121227|1426_1  37 NILVTGGAGFIASHVVIRLVKSYPQYKVVCLDKidycSSLHNLDEVanypNYKFIKGNILSADLIKYVLdtEKIDTILHAAAQTHVDNSfgNSFAFTENNVLGTHVLLESAKSIGIRRFIHVSTDEVYGSSYQDEPSRREGDVLE--PTNPYAATKAAAEAIARSYWFSfKMPVIVTRGNNVYGPHQYPEKVIPKFVRRLVKEQ-PCCIHgDGSNsrhFIYVGDVAAAFDTILHSGVDGEVYNIGCDD 281
                 579*************99999876666665554223466788887743344689********99998762256999*******99976533777899********************************9999999988877654..5679***************9999******999999****987777777777766665.6666415666444789*********************999765 PP

  == domain 2    score: 0.6 bits;  conditional E-value: 0.13
   TIGR03466 292 mffssakAereLgyrq.rpaeealkdaveWfra 323
                  +++s+k  + Lg++   ++ee+l++ veW+++
  MMETSP1137-20121227|1426_1 320 YYIDSTKL-HALGWKPvVSFEEGLAKTVEWYKK 351
                 57777775.57999862689***********97 PP

>> TIGR01746  Thioester-redct: thioester reductase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.7   0.0   0.00056      0.19       1      31 [.      37      67 ..      37      83 .. 0.96
   2 !   35.9   0.0   3.1e-12   1.1e-09      86     197 ..     107     218 ..      95     236 .. 0.84

  Alignments for each domain:
  == domain 1    score: 8.7 bits;  conditional E-value: 0.00056
   TIGR01746  1 tvlLTGAtGfLGaylleeLlrrsteakviCl 31
                ++l+TG  Gf+  + +  L+++  + kv+Cl
  MMETSP1137-20121227|1426_1 37 NILVTGGAGFIASHVVIRLVKSYPQYKVVCL 67
                69****************************9 PP

  == domain 2    score: 35.9 bits;  conditional E-value: 3.1e-12
   TIGR01746  86 aeevdtivhngAlVnfvqpYe...eLraaNVegtvevlrlaasgkakpliyvStlsvlaaielsakvevddatetkkpglatGYaqSKwvaEllvreasdr.glpvtivRpGrilg 197
                 +e++dti+h++A +++  ++     + + NV gt  +l+ a s  ++ +i+vSt  v+   + +    + + +e    + +++Ya++K +aE + r      ++pv + R  ++ g
  MMETSP1137-20121227|1426_1 107 TEKIDTILHAAAQTHVDNSFGnsfAFTENNVLGTHVLLESAKSIGIRRFIHVSTDEVYGSSY-Q---DEPSRREGDVLEPTNPYAATKAAAEAIARSYWFSfKMPVIVTRGNNVYG 218
                 589***********9876665222799******************************99755.2...567777777888899************9988777788888888777766 PP

>> TIGR03589  PseB: UDP-N-acetylglucosamine 4,6-dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.7   0.2   8.5e-14   2.9e-11       5     128 ..      36     163 ..      32     275 .. 0.88

  Alignments for each domain:
  == domain 1    score: 40.7 bits;  conditional E-value: 8.5e-14
   TIGR03589   5 ksilitGgtGsfGkkfikkllekykvkkiiiysrdelkq..felqqkfeedklrffiGdvrdkerleral..edvdlvvhaaalkqvpaaeynPleciktnieGaenvidaaldkgvkkvvalstdka 128
                 ++il+tGg+G    + + +l++ y   k++   + ++    ++l++  + ++ +f  G++   + ++  l  e++d+++haaa  +v+ +  n + + + n+ G++ ++++a   g+++ + +std  
  MMETSP1137-20121227|1426_1  36 TNILVTGGAGFIASHVVIRLVKSYPQYKVVCLDKIDYCSslHNLDEVANYPNYKFIKGNILSADLIKYVLdtEKIDTILHAAAQTHVDNSFGNSFAFTENNVLGTHVLLESAKSIGIRRFIHVSTDEV 163
                 78**********************99999999887775412567788888**********99998887763268****************************************************74 PP

>> TIGR01472  gmd: GDP-mannose 4,6-dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.2   0.0   1.2e-12   4.2e-10      60     176 ..      92     207 ..      55     279 .. 0.79
   2 ?   -3.4   0.0       2.6   8.9e+02     317     334 ..     328     345 ..     322     348 .. 0.74

  Alignments for each domain:
  == domain 1    score: 37.2 bits;  conditional E-value: 1.2e-12
   TIGR01472  60 yGdltdsssllklieeikpteiynlaaqshvkvsfeipeytadvdgiGtlrlleavrildlakkirfyqastselyGev.k.eipqkektpfnprspyaaaklyayyivvnyreayglf 176
                  G++  +  ++ ++++ k + i   aaq+hv  sf  +   ++ + +Gt  lle+ + ++     rf   st e+yG++ + e  ++e   ++p  pyaa+k +a  i+  y  ++ + 
  MMETSP1137-20121227|1426_1  92 KGNILSADLIKYVLDTEKIDTILHAAAQTHVDNSFGNSFAFTENNVLGTHVLLESAKSIGIR---RFIHVSTDEVYGSSyQdEPSRREGDVLEPTNPYAATKAAAEAIARSYWFSFKMP 207
                 5777777777778899999****************99988888899*************986...68899*******87341455678899**************99999998888774 PP

  == domain 2    score: -3.4 bits;  conditional E-value: 2.6
   TIGR01472 317 eklgwkrevslkelvkem 334
                 + lgwk+ vs++e + + 
  MMETSP1137-20121227|1426_1 328 HALGWKPVVSFEEGLAKT 345
                 579********9866554 PP

>> TIGR04130  FnlA: UDP-N-acetylglucosamine 4,6-dehydratase/5-epimerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.6   0.1   1.3e-08   4.5e-06       7     126 ..      38     162 ..      33     169 .. 0.75
   2 ?   -2.7   0.0       1.4   4.7e+02     173     203 ..     225     256 ..     181     276 .. 0.56

  Alignments for each domain:
  == domain 1    score: 23.6 bits;  conditional E-value: 1.3e-08
   TIGR04130   7 llitggtgsfgnavlrrfldtdikeirifsrde....kkqddmrkkynnkklkfyigdvr..dyrsilnatrgvdfiyhaaalkqvpscefhpleavktnvlgtenvleaaianevkrvvclstdk 126
                 +l+tgg+g +   v+ r++++   + ++   d+        ++    n  + kf  g++   d    +  t  +d i haaa   v       +     nvlgt  +le+a + +++r + +std 
  MMETSP1137-20121227|1426_1  38 ILVTGGAGFIASHVVIRLVKSY-PQYKVVCLDKidycSSLHNLDEVANYPNYKFIKGNILsaDLIKYVLDTEKIDTILHAAAQTHVDNSFGNSFAFTENNVLGTHVLLESAKSIGIRRFIHVSTDE 162
                 6899999999999999988764.33334333331111233455566677778888888751144444556889**************99889999999**************************97 PP

  == domain 2    score: -2.7 bits;  conditional E-value: 1.4
   TIGR04130 173 sviplfvdlikagkpltit.dpnmtrfmmtle 203
                  vip fv  +   +p  i  d   +r ++ + 
  MMETSP1137-20121227|1426_1 225 KVIPKFVRRLVKEQPCCIHgDGSNSRHFIYVG 256
                 46666665444444444421444444444333 PP

>> TIGR01777  yfcH: TIGR01777 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   9.1e-06    0.0031       1     242 [.      38     297 ..      38     302 .. 0.75

  Alignments for each domain:
  == domain 1    score: 14.9 bits;  conditional E-value: 9.1e-06
   TIGR01777   1 vlitGgtGliGralveelekk..ghevviltrskekekeekkesakevaee.........aeee......alegvdavinLaGepiadkrwteerkkeileSRikttealvelikkakqkpkvlisasavgyYgeseekel..teee.eeagddFlaklceeWEeaaqaa.eklgvrvvllRtgivLgekGGalaklll.....lfklglggklGsGrqwlsWihleDlvklilfaleneevsG.vvNataPepvrnkefakalakalh 242
                 +l+tGg G+i++++v +l k+  +++vv l + +  ++ +  +++++++++         a  +      ++e++d + + a ++ +d+ + +++  +++e  +  t++l+e  k+    ++ +i  s+  +Yg+s ++e    e +  e+ + + a +  + E++a++   + ++ v+++R   v g++    +k+++     l+k       G+G++   +i + D++++  ++l++  v G v+N+   +  +n e+a++l +a+h
  MMETSP1137-20121227|1426_1  38 ILVTGGAGFIASHVVIRLVKSypQYKVVCLDKIDYCSSLHNLDEVANYPNYkfikgnilsA--DlikyvlDTEKIDTILHAAAQTHVDNSFGNSF--AFTENNVLGTHVLLESAKSIG--IRRFIHVSTDEVYGSSYQDEPsrREGDvLEPTNPYAA-TKAAAEAIARSYwFSFKMPVIVTRGNNVYGPHQ-YPEKVIPkfvrrLVKEQPCCIHGDGSNSRHFIYVGDVAAAFDTILHS-GVDGeVYNIGCDDEHTNLEVARKLVRAVH 297
                 79****************9984468899999888766666655666666656666666541..1455666899**************99888776..79999**********999998..777***********77666540145554444554555.555668888775256788999999999999987.4444443000013344444557********************99988.777758999999999*******9999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (387 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       137  (0.0333983); expected 82.0 (0.02)
Passed bias filter:                      130  (0.0316919); expected 82.0 (0.02)
Passed Vit filter:                        28  (0.00682594); expected 4.1 (0.001)
Passed Fwd filter:                        12  (0.0029254); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.50u 0.17s 00:00:00.67 Elapsed: 00:00:00.48
# Mc/sec: 1064.16
//
Query:       MMETSP1137-20121227|1427_1  [L=404]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (404 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        72  (0.0175524); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.13s 00:00:00.40 Elapsed: 00:00:00.39
# Mc/sec: 1367.27
//
Query:       MMETSP1137-20121227|1428_1  [L=177]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (177 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        46  (0.011214); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.14s 00:00:00.32 Elapsed: 00:00:00.27
# Mc/sec: 865.26
//
Query:       MMETSP1137-20121227|1429_1  [L=277]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (277 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        33  (0.00804486); expected 82.0 (0.02)
Passed bias filter:                       30  (0.00731351); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.17s 00:00:00.37 Elapsed: 00:00:00.33
# Mc/sec: 1107.91
//
Query:       MMETSP1137-20121227|1430_1  [L=1347]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.5e-07   29.4   0.0      0.009   14.0   0.0    2.5  2  TIGR00229 sensory_box: PAS domain S-box protein


Domain annotation for each model (and alignments):
>> TIGR00229  sensory_box: PAS domain S-box protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.5   0.0   6.3e-06     0.026      24      80 ..      28      85 ..      18      91 .. 0.89
   2 !   14.0   0.0   2.2e-06     0.009      27      53 ..     193     219 ..     191     235 .. 0.86

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 6.3e-06
   TIGR00229 24 eGnilyvNrafeeifGYsaeeliGrnvlelipeedreevrerierrle.gerepvsee 80
                  +i+++ +a+ e fGYs++++   ++ el+ ++  ++++e++ r+l+ g+   v++ 
  MMETSP1137-20121227|1430_1 28 PFTIQSADDAWLEAFGYSRADVGRASFKELLGPDTCSKTAELLGRALQvGRGTAVRML 85
                56899999**************9999999*******************9999888875 PP

  == domain 2    score: 14.0 bits;  conditional E-value: 2.2e-06
   TIGR00229  27 ilyvNrafeeifGYsaeeliGrnvlel 53 
                 +l v+ra+ +++GYsa++++G+++++l
  MMETSP1137-20121227|1430_1 193 VLAVSRAWTDLTGYSAADVVGKTLAIL 219
                 689********************9886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1347 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       418  (0.101902); expected 82.0 (0.02)
Passed bias filter:                      117  (0.0285227); expected 82.0 (0.02)
Passed Vit filter:                        18  (0.0043881); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.92u 0.16s 00:00:01.08 Elapsed: 00:00:01.20
# Mc/sec: 1481.58
//
Query:       MMETSP1137-20121227|1431_1  [L=188]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (188 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       630  (0.153584); expected 82.0 (0.02)
Passed bias filter:                      111  (0.02706); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.16s 00:00:00.44 Elapsed: 00:00:00.35
# Mc/sec: 708.97
//
Query:       MMETSP1137-20121227|1433_1  [L=67]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (67 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        41  (0.00999512); expected 82.0 (0.02)
Passed bias filter:                       38  (0.00926377); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.90
# Mc/sec: 98.26
//
Query:       MMETSP1137-20121227|1434_1  [L=46]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.2e-20   69.8   0.1    4.4e-20   69.8   0.1    1.0  1  TIGR01822 2am3keto_CoA: 2-amino-3-ketobutyrate coenzyme A ligase
    4.6e-11   39.8   0.0    4.6e-11   39.8   0.0    1.0  1  TIGR01825 gly_Cac_T_rel: putative pyridoxal phosphate-dependent acyltransferase
      8e-07   25.9   0.0    8.1e-07   25.9   0.0    1.0  1  TIGR00858 bioF: 8-amino-7-oxononanoate synthase
    0.00015   18.6   0.0    0.00016   18.5   0.0    1.0  1  TIGR01821 5aminolev_synth: 5-aminolevulinic acid synthase


Domain annotation for each model (and alignments):
>> TIGR01822  2am3keto_CoA: 2-amino-3-ketobutyrate coenzyme A ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.8   0.1   4.3e-23   4.4e-20     349     393 .]       2      46 .]       1      46 [] 0.97

  Alignments for each domain:
  == domain 1    score: 69.8 bits;  conditional E-value: 4.3e-23
   TIGR01822 349 iGffypvvpkGqarirvqlsaaheeeqldkaveafvkvGrelgvi 393
                 iGf+ypvvpkGqarir+qlsaah++e++ +av+afvkvG+++gv+
  MMETSP1137-20121227|1434_1   2 IGFSYPVVPKGQARIRTQLSAAHSDEDIARAVDAFVKVGKKMGVV 46 
                 8*****************************************996 PP

>> TIGR01825  gly_Cac_T_rel: putative pyridoxal phosphate-dependent acyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.8   0.0   4.5e-14   4.6e-11     342     385 .]       3      46 .]       1      46 [] 0.95

  Alignments for each domain:
  == domain 1    score: 39.8 bits;  conditional E-value: 4.5e-14
   TIGR01825 342 sivfPtvprgtarirnivtaehtkddldqaldayekvgkelkll 385
                 +  +P vp+g+arir+ ++a+h+ +d+ +a+da+ kvgk+++++
  MMETSP1137-20121227|1434_1   3 GFSYPVVPKGQARIRTQLSAAHSDEDIARAVDAFVKVGKKMGVV 46 
                 568**************************************985 PP

>> TIGR00858  bioF: 8-amino-7-oxononanoate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.9   0.0   7.9e-10   8.1e-07     332     364 ..       4      36 ..       1      37 [. 0.91

  Alignments for each domain:
  == domain 1    score: 25.9 bits;  conditional E-value: 7.9e-10
   TIGR00858 332 iRpPTVpkgtaRlRltlsaahteediellleal 364
                 + +P Vpkg+aR+R  lsaah++edi ++++a+
  MMETSP1137-20121227|1434_1   4 FSYPVVPKGQARIRTQLSAAHSDEDIARAVDAF 36 
                 569************************999875 PP

>> TIGR01821  5aminolev_synth: 5-aminolevulinic acid synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.0   1.5e-07   0.00016     359     398 ..       5      44 ..       2      46 .] 0.94

  Alignments for each domain:
  == domain 1    score: 18.5 bits;  conditional E-value: 1.5e-07
   TIGR01821 359 nyPtvargterlrltPtPvhtdklidelveallevfeela 398
                  yP v++g+ r+r   + +h+d++i + v+a+++v ++++
  MMETSP1137-20121227|1434_1   5 SYPVVPKGQARIRTQLSAAHSDEDIARAVDAFVKVGKKMG 44 
                 6**********************************99886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (46 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       100  (0.0243784); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.28
# Mc/sec: 216.84
//
Query:       MMETSP1137-20121227|1435_1  [L=931]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (931 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       130  (0.0316919); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.53u 0.16s 00:00:00.69 Elapsed: 00:00:00.47
# Mc/sec: 2614.51
//
Query:       MMETSP1137-20121227|1436_1  [L=269]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.3e-11   43.0   0.0    5.5e-09   34.5   0.0    2.3  2  TIGR01444 fkbM_fam: methyltransferase, FkbM family


Domain annotation for each model (and alignments):
>> TIGR01444  fkbM_fam: methyltransferase, FkbM family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.5   0.0   0.00056       2.3       1      16 [.      20      35 ..      20      55 .. 0.89
   2 !   34.5   0.0   1.3e-12   5.5e-09      26     143 .]      71     208 ..      54     208 .. 0.75

  Alignments for each domain:
  == domain 1    score: 6.5 bits;  conditional E-value: 0.00056
   TIGR01444  1 vviDiGAniGdvslvf 16
                v++D GAniG++++++
  MMETSP1137-20121227|1436_1 20 VFLDMGANIGMHARFL 35
                69**********9886 PP

  == domain 2    score: 34.5 bits;  conditional E-value: 1.3e-12
   TIGR01444  26 iafEPlpdllekleenvklnnlkn..vkllnaAvgdreg.....eleftvsddatgnsslaads....elaees............eieVevvtlddlveeaglekvdllKiDvEGaEleVLrgl..aetleekvpaivlevh 143
                 + fEP+p+  ++l+e  +  +     v +l+  v+d+ g     + ef++ ++a+++ ++++ +         +             + V ++ l d +++++  ++ ++K+D+EG E++V+ ++     l  +v++i +e+h
  MMETSP1137-20121227|1436_1  71 VEFEPNPRHEKRLTELQHVYAGHGwkVLYLPFGVSDHHGvsnfhLNEFASNSSANEDYAFSMYEksgsT----KsfrlkmldvqdiMRRVGSRLLPDTASQRS-PPIVMIKMDIEGGEFSVIPQMltHGVLCHQVDYITMEFH 208
                 77*********9999877777766335667889999999666655555555555555454444443330....2566777777788678*************9.79****************998755666788999999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (269 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        43  (0.0104827); expected 82.0 (0.02)
Passed bias filter:                       39  (0.00950756); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.23u 0.12s 00:00:00.35 Elapsed: 00:00:00.34
# Mc/sec: 1044.27
//
Query:       MMETSP1137-20121227|1437_1  [L=1237]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.19    8.2   0.0       0.29    7.5   0.0    1.2  1  TIGR01980 sufB: FeS assembly protein SufB


Domain annotation for each model (and alignments):
>> TIGR01980  sufB: FeS assembly protein SufB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   0.0   7.1e-05      0.29     286     362 ..      51     128 ..      23     134 .. 0.83

  Alignments for each domain:
  == domain 1    score: 7.5 bits;  conditional E-value: 7.1e-05
   TIGR01980 286 kitmkyPssiLkgekaktevlsialakk.gqqkdtGakvihlapetsstiisksiskdggkssyrGlvkiakkakgak 362
                 +++ ++ +  L+ + + + ++s+++a++ g+++ t a v  ++++ ss + s+++ + +g+++ rG  +++++ + ++
  MMETSP1137-20121227|1437_1  51 EAAQRWIAHTLRRTASDALHTSLSVAAQgGTEARTDAEVGQAGERNSSLVSSQGVGQTEGRCVPRGTAQLSHREEVSR 128
                 5566667778888888899999998766267899*********************************99988777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1237 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       111  (0.02706); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.76u 0.17s 00:00:00.93 Elapsed: 00:00:00.65
# Mc/sec: 2511.85
//
Query:       MMETSP1137-20121227|1438_1  [L=226]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.2e-11   41.7   0.0    1.9e-11   41.0   0.0    1.3  1  TIGR00389 glyS_dimeric: glycine--tRNA ligase
  ------ inclusion threshold ------
      0.014   12.6   0.0       0.16    9.1   0.0    2.0  2  TIGR02476 BluB: cob(II)yrinic acid a,c-diamide reductase


Domain annotation for each model (and alignments):
>> TIGR00389  glyS_dimeric: glycine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.0   0.0   9.5e-15   1.9e-11       2      43 ..      78     119 ..      77     122 .. 0.93

  Alignments for each domain:
  == domain 1    score: 41.0 bits;  conditional E-value: 9.5e-15
   TIGR00389   2 ereklvsllkrrgflfqsfeiYgGlaglvDygPlGaelknni 43 
                 +++++v+l krrgf f s+e+YgG +g++DygPlG+el + +
  MMETSP1137-20121227|1438_1  78 SMDEIVNLCKRRGFAFLSSEVYGGFSGFYDYGPLGVELGKTL 119
                 6899*********************************98876 PP

>> TIGR02476  BluB: cob(II)yrinic acid a,c-diamide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   0.0   7.9e-05      0.16      12      73 ..      12      75 ..       5      95 .. 0.74
   2 ?    1.5   0.0     0.017        36     133     163 ..     151     181 ..     112     190 .. 0.79

  Alignments for each domain:
  == domain 1    score: 9.1 bits;  conditional E-value: 7.9e-05
   TIGR02476 12 llkeRRDvRrfrsdPvdeevlerlleaahlAPsvGlsqPWriv...rveeeakreavlalfeean 73
                ll+  R   + r +Pv   v+ r l+  h+A +vG + P++i    rv+++++ +av ++ e  +
  MMETSP1137-20121227|1438_1 12 LLTSTRAALHGRAAPVGTSVIGRSLSKTHAAKAVGAT-PFAIGrvgRVRDPSMCAAVEEAKETVK 75
                566677788999***********************75.886651115566666666665555544 PP

  == domain 2    score: 1.5 bits;  conditional E-value: 0.017
   TIGR02476 133 aiqnlwlaaRaeGlGvGwvsildpealarll 163
                 a q +w  a  +G   G+ sil+  +++++l
  MMETSP1137-20121227|1438_1 151 ADQLFWARAEVDGELFGYYSILECGDMEEQL 181
                 557899999999999********99999877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (226 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       105  (0.0255973); expected 82.0 (0.02)
Passed bias filter:                       97  (0.023647); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.23u 0.17s 00:00:00.40 Elapsed: 00:00:00.38
# Mc/sec: 784.99
//
Query:       MMETSP1137-20121227|1439_1  [L=102]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (102 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        59  (0.0143832); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.14s 00:00:00.29 Elapsed: 00:00:00.27
# Mc/sec: 498.63
//
Query:       MMETSP1137-20121227|1440_1  [L=189]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (189 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        58  (0.0141394); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.13s 00:00:00.30 Elapsed: 00:00:00.48
# Mc/sec: 519.71
//
Query:       MMETSP1137-20121227|1441_1  [L=163]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (163 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        88  (0.0214529); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.16s 00:00:00.34 Elapsed: 00:00:00.66
# Mc/sec: 325.97
//
Query:       MMETSP1137-20121227|1442_1  [L=143]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      3e-07   28.3   0.2    8.7e-07   26.8   0.2    1.9  1  TIGR00589 ogt: methylated-DNA-[protein]-cysteine S-methyltransferase


Domain annotation for each model (and alignments):
>> TIGR00589  ogt: methylated-DNA-[protein]-cysteine S-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.8   0.2   2.1e-10   8.7e-07       1      39 [.      26      65 ..      26     100 .. 0.90

  Alignments for each domain:
  == domain 1    score: 26.8 bits;  conditional E-value: 2.1e-10
   TIGR00589  1 tefqqkvwkalreikyGetvsYselakaigkpkav.Ravg 39
                t+++q+v++a+++i+ G++++Y+e+a+a+g+++ + Ra g
  MMETSP1137-20121227|1442_1 26 TAYRQRVFEAVKTIPSGRVSTYGEVARAAGNAQQPlRARG 65
                89***************************99865326655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (143 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        88  (0.0214529); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.17u 0.16s 00:00:00.33 Elapsed: 00:00:00.30
# Mc/sec: 629.15
//
Query:       MMETSP1137-20121227|1445_1  [L=427]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (427 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       249  (0.0607021); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.13s 00:00:00.44 Elapsed: 00:00:00.45
# Mc/sec: 1252.43
//
Query:       MMETSP1137-20121227|1446_1  [L=415]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0031   15.7   0.1     0.0055   14.9   0.1    1.3  1  TIGR00269 TIGR00269: TIGR00269 family protein


Domain annotation for each model (and alignments):
>> TIGR00269  TIGR00269: TIGR00269 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.1   1.3e-06    0.0055      53      97 ..      68     114 ..      55     119 .. 0.71

  Alignments for each domain:
  == domain 1    score: 14.9 bits;  conditional E-value: 1.3e-06
   TIGR00269  53 kpgvkfsvlrsfekkiillkelse..keelrrCerCGePasgkiCka 97 
                  pg+  s +r   ++i   ++l e  +e+ +rC+rCG+P  g++C+a
  MMETSP1137-20121227|1446_1  68 LPGRSVSSVRNRWQRIEKGRKLREagHESKNRCQRCGQPKRGHVCHA 114
                 5666666555443335556666652246789**************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (415 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       114  (0.0277913); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.30u 0.19s 00:00:00.49 Elapsed: 00:00:00.37
# Mc/sec: 1480.42
//
Query:       MMETSP1137-20121227|1447_1  [L=254]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (254 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       145  (0.0353486); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.14s 00:00:00.37 Elapsed: 00:00:00.47
# Mc/sec: 713.30
//
Query:       MMETSP1137-20121227|1448_1  [L=941]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (941 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       161  (0.0392491); expected 82.0 (0.02)
Passed bias filter:                      105  (0.0255973); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.60u 0.15s 00:00:00.75 Elapsed: 00:00:00.67
# Mc/sec: 1853.76
//
Query:       MMETSP1137-20121227|1449_1  [L=133]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.27    9.6   3.0       0.79    8.1   0.2    2.1  2  TIGR02459 CbtB: cobalt transporter subunit CbtB (proposed)
        2.1    6.8  10.2      0.097   11.0   0.4    2.7  2  TIGR01409 TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence


Domain annotation for each model (and alignments):
>> TIGR02459  CbtB: cobalt transporter subunit CbtB (proposed)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.1     0.034        70      12      30 ..       5      23 ..       1      33 [. 0.66
   2 ?    8.1   0.2   0.00039      0.79       7      32 ..      48      73 ..      41      78 .. 0.80

  Alignments for each domain:
  == domain 1    score: 1.9 bits;  conditional E-value: 0.034
   TIGR02459 12 ssvsaarlaaaivaalLGa 30
                +s+s  r++a++ a+l  +
  MMETSP1137-20121227|1449_1  5 TSTSSTRRRALMQAFLVLG 23
                5666677777777776433 PP

  == domain 2    score: 8.1 bits;  conditional E-value: 0.00039
   TIGR02459  7 tssaassvsaarlaaaivaalLGafl 32
                 ss  ++ ++++++a + aa+LGa l
  MMETSP1137-20121227|1449_1 48 SSSPMMMEETSSRRAFLGAAVLGAAL 73
                35566788999************987 PP

>> TIGR01409  TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   2.5      0.29   5.9e+02       4      27 ..      12      35 ..       9      36 .. 0.57
   2 ?   11.0   0.4   4.7e-05     0.097       2      20 ..      59      76 ..      58      85 .. 0.66

  Alignments for each domain:
  == domain 1    score: -1.0 bits;  conditional E-value: 0.29
   TIGR01409  4 RdFLkaa.aaagaaaglglllpspa 27
                R+ L  a  + g +a ++ ++++pa
  MMETSP1137-20121227|1449_1 12 RRALMQAfLVLGFLASAS-AFVQPA 35
                555544437777777766.466666 PP

  == domain 2    score: 11.0 bits;  conditional E-value: 4.7e-05
   TIGR01409  2 sRRdFLkaaaaagaaaglg 20
                sRR FL+aa + gaa+ ++
  MMETSP1137-20121227|1449_1 59 SRRAFLGAA-VLGAALPAS 76
                9*****976.444444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (133 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        51  (0.012433); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.16u 0.16s 00:00:00.32 Elapsed: 00:00:00.33
# Mc/sec: 531.96
//
Query:       MMETSP1137-20121227|1450_1  [L=171]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (171 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        41  (0.00999512); expected 82.0 (0.02)
Passed bias filter:                       39  (0.00950756); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.14s 00:00:00.31 Elapsed: 00:00:00.32
# Mc/sec: 705.32
//
Query:       MMETSP1137-20121227|1451_1  [L=272]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (272 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       100  (0.0243784); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.13s 00:00:00.35 Elapsed: 00:00:00.35
# Mc/sec: 1025.74
//
Query:       MMETSP1137-20121227|1452_1  [L=149]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (149 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        52  (0.0126767); expected 82.0 (0.02)
Passed bias filter:                       38  (0.00926377); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.12s 00:00:00.29 Elapsed: 00:00:00.31
# Mc/sec: 634.40
//
Query:       MMETSP1137-20121227|1453_1  [L=178]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (178 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        88  (0.0214529); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.16s 00:00:00.33 Elapsed: 00:00:00.37
# Mc/sec: 634.97
//
Query:       MMETSP1137-20121227|1454_1  [L=291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      0.004   13.6   0.2     0.0059   13.1   0.1    1.1  1  TIGR01982 UbiB: 2-polyprenylphenol 6-hydroxylase


Domain annotation for each model (and alignments):
>> TIGR01982  UbiB: 2-polyprenylphenol 6-hydroxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.1   0.1   1.4e-06    0.0059     281     303 ..     155     177 ..     142     185 .. 0.89

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 1.4e-06
   TIGR01982 281 DlHpGNilvakdgkiialDfGiv 303
                 D H+GN++++ +g++  +DfG v
  MMETSP1137-20121227|1454_1 155 DRHNGNLMLDDEGHFFHVDFGFV 177
                 99*******************87 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (291 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        97  (0.023647); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.24u 0.13s 00:00:00.37 Elapsed: 00:00:00.42
# Mc/sec: 914.50
//
Query:       MMETSP1137-20121227|1455_1  [L=386]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (386 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       187  (0.0455875); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.18s 00:00:00.48 Elapsed: 00:00:00.59
# Mc/sec: 863.52
//
Query:       MMETSP1137-20121227|1456_1  [L=211]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (211 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        76  (0.0185275); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.18s 00:00:00.39 Elapsed: 00:00:00.51
# Mc/sec: 546.07
//
Query:       MMETSP1137-20121227|1457_1  [L=389]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.8e-74  248.7   0.0    2.2e-74  248.4   0.0    1.0  1  TIGR00749 glk: glucokinase
  ------ inclusion threshold ------
      0.023   11.1   1.5      0.028   10.8   0.0    1.7  2  TIGR01343 hacA_fam: homoaconitate hydratase family protein


Domain annotation for each model (and alignments):
>> TIGR00749  glk: glucokinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  248.4   0.0   1.1e-77   2.2e-74       2     314 ..      33     372 ..      32     373 .. 0.91

  Alignments for each domain:
  == domain 1    score: 248.4 bits;  conditional E-value: 1.1e-77
   TIGR00749   2 vgdiGGtnarlalvevapgeieqv.............ktyssedfpsleavvrvyleeakvelkd..pikgcfaiatPiigdfvrltnld..WalsieelkqelalaklelindfaavayailalkeedliqlggakveesaaiailGaGtGlGvatliqqsdgrykvlageGghvdfaPrseleillleylrkky...grvsaervlsGsGlvliyealskrkgere.....vsklskeelkekd...iseaalegsdvlarralelflsilGalagnlalklgarGGvyvaGGivPrfiellkkssfraafedkGrlkellasiPvqvvlkkkvGllGa 314
                  gd GGtn+rl +  v p    ++             kty  e+++s+e++ +++l+ea+   +   p   c+a a+ i+++ v +tn    W++ +e l ++l++ k+ l+ndf+a++y++l+l++ + + l+ ak++++a+ia +GaGtGlG ++l    dg+y   ++eGgh++f+Prs+l   l+++l+ ++    rvs+erv+sG+Gl++iye+l+++ + +      + k  ++    k+   i+e a eg+ +++ +a+++f   +Ga+ag  alk +++GG+y++GGi+ +   ++k+  f  a+edkGrl + ++s P+++vl  +vG  Ga
  MMETSP1137-20121227|1457_1  33 SGDCGGTNTRLRVFHVPPDAHTKLahgqkppgvvvfdKTYVNEEHKSIEDICKLFLKEAAPFSGSmvPTSCCLACAGAITDNSVVFTNVAdgWTIRGESLSKSLGIPKVVLVNDFVAQGYGLLTLEDSEKMLLNDAKPVPGAPIACVGAGTGLGECYLTASPDGKYTCWPSEGGHTEFSPRSKLTEDLFDFLKDRFaakKRVSVERVVSGTGLANIYEFLREHWAFEGrmnveIDKSFNAAEPSKKgmvIAEGAKEGD-PVCSEAVNIFNECFGAEAGAAALKWLPKGGLYISGGIAAKNPAWIKSEQFVHAYEDKGRLADQVKSTPLYLVLAGDVGERGA 372
                 69***********977776666556677788889999**********************9888775788*******************7444********************************************************************************************************9989*********************9877665444445555444433333676999998875.88****************************************************************************9887 PP

>> TIGR01343  hacA_fam: homoaconitate hydratase family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.2       0.1   2.1e+02     346     361 ..      95     110 ..      81     113 .. 0.86
   2 ?   10.8   0.0   1.4e-05     0.028     146     199 ..     331     385 ..     323     388 .. 0.83

  Alignments for each domain:
  == domain 1    score: -2.0 bits;  conditional E-value: 0.1
   TIGR01343 346 aGavvstpgCgpClGa 361
                  G++v t+ C +C Ga
  MMETSP1137-20121227|1457_1  95 SGSMVPTSCCLACAGA 110
                 599**********997 PP

  == domain 2    score: 10.8 bits;  conditional E-value: 1.4e-05
   TIGR01343 146 GkvWlkvPesik.vkltGklkpgvtakdvvLevikeiGvdGatykavefegetvk 199
                    W+k  + ++  + +G l ++v +  + L + +++G +Ga+y av   g++v+
  MMETSP1137-20121227|1457_1 331 NPAWIKSEQFVHaYEDKGRLADQVKSTPLYLVLAGDVGERGAQYVAVSLMGQVVE 385
                 556777777665245689*********************************9997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (389 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       102  (0.0248659); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.30u 0.16s 00:00:00.46 Elapsed: 00:00:00.39
# Mc/sec: 1316.51
//
Query:       MMETSP1137-20121227|1458_1  [L=138]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (138 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        92  (0.0224281); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.12s 00:00:00.29 Elapsed: 00:00:00.28
# Mc/sec: 628.09
//
Query:       MMETSP1137-20121227|1459_1  [L=1014]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.7e-13   45.1  67.7    1.2e-10   37.6  25.5    2.7  2  TIGR02168 SMC_prok_B: chromosome segregation protein SMC
    2.8e-09   33.1  60.7    0.00059   15.4  21.3    3.2  3  TIGR02169 SMC_prok_A: chromosome segregation protein SMC
  ------ inclusion threshold ------
       0.86    5.0  63.6      0.038    9.5  24.6    2.2  2  TIGR02680 TIGR02680: TIGR02680 family protein
        6.3    4.7  19.0        2.3    6.1   0.6    5.0  4  TIGR02209 ftsL_broad: cell division protein FtsL


Domain annotation for each model (and alignments):
>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0  15.1   3.2e-06    0.0033     143     388 ..      33     273 ..      28     286 .. 0.78
   2 !   37.6  25.5   1.2e-13   1.2e-10     766    1132 ..     479     857 ..     463     870 .. 0.85

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 3.2e-06
   TIGR02168 143 qGkieeiieakpeerRailEEAAGvskYkerkketekk..LerteenLeRledilkElerqlksLerQaekAekykelkeelrelelallvlrleelkeeleeleeelkeaeeeleeleaelkeleeeleelrlekseleeeleelqkelqelkaeisrleqeieilkerleqlekeleeleeqleeleskkeeleeelaeleeeleelkeelesleaeleeaeaeleelesrleeleeeleelrsev 388
                 q+k++++ +  pe + +  EEA G     + ++  +k+  L++++  L+  e  l++le + + L++ +++ ++y++  ++++ l ++ l l  e + +elee+ ++++++++el+++++e +e e++l  l++  ++ ++++++++ ++++l ae+ +l  +   +++ +++     +++   l + +++  +  ++l++l+++  +   +++s++ +le+   el ++e+ +++l +  +++++ +
  MMETSP1137-20121227|1459_1  33 QDKVGQFSTLAPEKLLEYTEEAIGEGLIDQHRELIQKQgeLKKMRHALATEEKTLADLEAENEGLQKDVDRWNRYQRGLARMELLGAKKLWLAHETAAAELEEVHADYRKKKDELAAKNREKAEREQKLRPLKETLQRCKDTKAKADIKYNRLDAEKTALGGDEGGIDQAESDI----QKARLALLRVDQDYRKRLDNLETLKAKXGNDCDDHDSAARQLER---ELCNAEQGVRALGDVSRRKQQLI 273
                 899999999999999999999999777777777666655599999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999996544....44444444555555555555555555555555555555555544...67777777666666666555544 PP

  == domain 2    score: 37.6 bits;  conditional E-value: 1.2e-13
   TIGR02168  766 eeleeeleeaeeelkeaeeeieeleaeieqlkeelkalrealseleaeltelkeeaaekeerleslekeiaalekele..eleeqieeleeeiesleaeieeleeeleeleeeleellkekasleealaelreeleelseelrelekkvkelereleelreklaqlelrleeleveiaelqerlseeyeleleeaeeleekveeeeeeaeeelkrl...eekikeLGpVNlaAieEyeelkeRyeflekqkeDleeAkekLeeaIeeidkearerfkdtfekvnenfqevFsklFggGeaeLe...........ltdpedlLeagieIkaqPpGKklqnlslLSGGEK.....ALtAlaLlFAifkvkPaPfciLDEVdApLDdaNve 1132
                  ++ e++l++a+e+l++++e+++el++ +e+ k++++a +e+l+++++ +t+lk   +    r ++l+ +i+a+eke+   + ++++ee ++++ ++ +++ e++++l+++ ++ +++ +e+  ++ + +++++ l e+++el+++e  +++l+++ + ++ +l+ +++r+ +l++e +  + +ls+e +   e+a+++ +++ ++ +e+++e++ l   e++ ++ G+ + ++++ ++e+ + +e++++  ++ ++++e   +a++ +++  + r+++++e vn+nf + F++  + Ge  L+           l d++d  +  i I+++ +   +++l+ L  GE      +   +  l A+  ++PaPf + DE+  + D +N +
  MMETSP1137-20121227|1459_1  479 QQREAALTHAKEQLSAHQETSAELRRAVETKKSAHAAATERLKAVQSHITRLKHLQN----RKDQLQLKISAAEKEVGafDSDAKKEEHRARLREAHNRLCEFQKQLSAIIKKQAAAVAEVCGHALEAEAVETILIEAKHELQDVEAVIRQLQTSEKDAQGNLQVVKQRCLKLKAEAEAKAPQLSSERRAGDEKAAKEWSSMPSSLDEIDDEIEMLveaETSADRAGA-DANSLKHFKEKMKQLEEVRERVAESTSSLEAESSAVRSLENNWKPRLLEMVETVNANFSKYFQRFKCVGEVALSdgkrrnadgnvLSDEDDYSQYKIHIMVKWR--ANEQLHVL--GEAgrdsdSVATMIYLIALQIINPAPFRVVDEINQAMDSTNER 857 
                  45667788999999***********************************99987766....55677777777777766115566677777888899999999999999999999999999999*******************************************************************99999999999999999***999976222566777776.999999999999999999999999999999999********************************99****995555555555558899999999999999885..68999999..55322222444455699*********************99965 PP

>> TIGR02169  SMC_prok_A: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.5  13.0   4.4e-06    0.0045     309     508 ..      64     267 ..      53     278 .. 0.79
   2 !   15.4  21.3   5.8e-07   0.00059     202     457 ..     483     744 ..     466     777 .. 0.48
   3 !   12.2   0.0   5.4e-06    0.0056    1082    1128 ..     823     869 ..     820     878 .. 0.92

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 4.4e-06
   TIGR02169 309 raiaekeeeledaeerlakaeaeidklkeeieelereieeekkereklke.el...kelkeeleelraeleevdkeaaelreelkelkekleklkeelnelkreldrlleelkrleeelaelkaelerieekiaeleeeleelaeeikkaeqkleqlkedlekaekelrklkeeleklekelselerelaeleaqakaseeesr 508
                 r++ +k+ el+++ + la  e+ +  l++e e l++++ ++++ ++ l   el   k+l    e+  aeleev ++ ++ ++el+++++++ + +++l +lk +l+r ++++ +++ + ++l ae +++  +   ++++  +++++  +  +  +  ++ l+++e  + k  ++ ++ ++  ++lerel ++e   +a+ + sr
  MMETSP1137-20121227|1459_1  64 RELIQKQGELKKMRHALATEEKTLADLEAENEGLQKDVDRWNRYQRGLARmELlgaKKLWLAHETAAAELEEVHADYRKKKDELAAKNREKAEREQKLRPLKETLQRCKDTKAKADIKYNRLDAEKTALGGDEGGIDQAESDIQKARLALLRVDQDYRKRLDNLETLKAKXGNDCDDHDSAARQLERELCNAEQGVRALGDVSR 267
                 555678999*******************************9998887754233111333346788999************************************************9999998887777666666666666666555555555566666777777777778888899999999999999999999999888773 PP

  == domain 2    score: 15.4 bits;  conditional E-value: 5.8e-07
   TIGR02169 202 erLekerekaerYkeLkkekreleltlllkel...ealekqkekiekelaeleeelekleeeieelekeleeiekkleelnkkie.klgeeeqlavkekleelkaeiekleraiaekeeeledaeerlakaeaeidklkeeieelereieeekkereklkeelkelkeeleelraeleevdkeaa.elreelkelkekleklkeelnelkreldrlleelkrleeelaelka...elerieekiaeleeeleelaeeikkaeqk 457
                   L + +e+   ++e ++e+r +  t ++++    e l++ +++i  +l++l++ +++l+ +i++ eke+ +  ++ ++ +++ + +++ ++  +++++l  +  +++ + +++   + e+e +e  l +a+ e++ +++ i++l+++ ++ + + + +k++  +lk+e e++  +l ++  + + ++ +e +++   l+++ +e++ l  e +   +++    + l++ k+   +le+++e++ae  ++le+   +++  e++
  MMETSP1137-20121227|1459_1 483 AALTHAKEQLSAHQETSAELRRAVETKKSAHAaatERLKAVQSHI-TRLKHLQNRKDQLQLKISAAEKEVGAFDSDAKKEEHRARlREAHNRLCEFQKQLSAIIKKQAAAVAEVCGHALEAEAVETILIEAKHELQDVEAVIRQLQTSEKDAQGNLQVVKQRCLKLKAEAEAKAPQLSSERRAGDeKAAKEWSSMPSSLDEIDDEIEMLV-EAETSADRAGADANSLKHFKEkmkQLEEVRERVAESTSSLEAESSAVRSLENN 744
                 235555555555555555555333333222220002222222222.34555556666666666666666666555444443333212355666666666666666666666666666666666666666666666666666666666666666666666666666666666666555554443330334445555555555555555443.22222233222222222222200023333344444444444444444444444 PP

  == domain 3    score: 12.2 bits;  conditional E-value: 5.4e-06
   TIGR02169 1082 sltALsfifAiQrykPspfYafDEvDmfLDgvNvervaklikekake 1128
                  s++ + ++ A+Q   P+pf + DE+   +D  N  +v   i e  k+
  MMETSP1137-20121227|1459_1  823 SVATMIYLIALQIINPAPFRVVDEINQAMDSTNERNVFACIMEACKD 869 
                  899999*******************************9999998776 PP

>> TIGR02680  TIGR02680: TIGR02680 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2  14.0     0.012        12     232     417 ..      80     259 ..      50     351 .. 0.52
   2 ?    9.5  24.6   3.7e-05     0.038     282     553 ..     482     751 ..     442     766 .. 0.66

  Alignments for each domain:
  == domain 1    score: 1.2 bits;  conditional E-value: 0.012
   TIGR02680 232 LdeardeLerleaeerAlrnflqryreYartalrrratelrsAqkqldelsrdlgeakdelekareeereldartealeaeaealrtrleaLqeseayqkakeleraraeaealqkaaaeaekavaeaesreeeerrrldeeaarleeaeeelraareelareAeraglseahtaeplaalaaqel 417
                 L  + + L++leae+++l++ ++r+ +Y r+ +r +   +++     ++++++l+e + ++ k ++e++  + +  + e+++  l++ l+  ++ +a ++  +++r++ae++al       e  + +aes+ +++r +l  +++  ++   +l++ +++  ++      s a + e   ++a+q +
  MMETSP1137-20121227|1459_1  80 LATEEKTLADLEAENEGLQKDVDRWNRYQRGLARMELLGAKKLWLAHETAAAELEEVHADYRKKKDELAAKNREKAEREQKLRPLKETLQRCKDTKAKADI-KYNRLDAEKTALGG----DEGGIDQAESDIQKARLALLRVDQDYRKRLDNLETLKAKXGNDCDDHD-SAARQLERELCNAEQGV 259
                 33445566666677777666666666666666666544444444444444445555554444444444444444444444444444444444444443333.34555544444332....233333333333333333333333333333333333333333322221.12222222223333333 PP

  == domain 2    score: 9.5 bits;  conditional E-value: 3.7e-05
   TIGR02680 282 srdlgeakdelekareeereldartealeaeaealrtrleaLqeseayqkakeleraraeaealqkaaaeaekavaeaesreeeerrrldeeaarleeaeeelraa.reelareAeraglse.ahtaeplaalaaqelqelga..laldarrqdadrviaerselvallrrrvdeadeaeaesaaaraardel.deeaeqaaaraeladeavdeeeavlaaadawqaqleeltalavdeavsaLadldslaallqgeap.vreavesavqkladelar 553
                 +++l +ak++l + +e+ +el+ ++e  + ++ a+ +rl+a q++  +   k+l+  r+++ +l+  aae+e  + + ++++ee+r rl+e ++rl e +++l+a  ++++a+ Ae  g    a+  e    +a++elq + a   +l++  +da++  +  +++  +l++   + ++a + s ++ra  ++  +e+     +  e  de++   ea +  ad  +a++++l+  +++e+++ L++  + +a  +   +    av+s  ++++ +l +
  MMETSP1137-20121227|1459_1 482 EAALTHAKEQLSAHQETSAELRRAVETKKSAHAAATERLKAVQSH--ITRLKHLQ-NRKDQLQLKISAAEKEVGAFDSDAKKEEHRARLREAHNRLCEFQKQLSAIiKKQAAAVAEVCGHALeAEAVETILIEAKHELQDVEAviRQLQTSEKDAQGNLQVVKQRCLKLKAE--AEAKAPQLSSERRAGDEKAaKEWSSMPSSLDEIDDEIEMLVEAETS-ADRAGADANSLK--HFKEKMKQLEEVRERVAESTSSLEaESSAVRSLENNWKPRLLE 751
                 345566666666666666666666666666666666666666655..45556665.556666777777788888889999***********************996378999999999987615556666778999999997633356666666666666665555554443..3344455555555554444134555555555557777666666666.455556666665..5667777777776666555554441244666666666666655 PP

>> TIGR02209  ftsL_broad: cell division protein FtsL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   0.6    0.0022       2.3      23      62 ..      70     109 ..      65     114 .. 0.90
   2 ?    4.0   0.1      0.01        10      25      58 ..     160     193 ..     157     196 .. 0.89
   3 ?    3.8   0.8     0.011        11      26      65 ..     530     569 ..     522     572 .. 0.88
   4 ?   -0.6   0.4      0.27   2.7e+02      29      51 ..     612     634 ..     605     643 .. 0.81

  Alignments for each domain:
  == domain 1    score: 6.1 bits;  conditional E-value: 0.0022
   TIGR02209  23 qhqtrqlnselqklqaeieklqkewndLqlEvaelsrheR 62 
                 q ++ ++  +l++ ++   +l++e++ Lq  v ++ r++R
  MMETSP1137-20121227|1459_1  70 QGELKKMRHALATEEKTLADLEAENEGLQKDVDRWNRYQR 109
                 6677889999****************************99 PP

  == domain 2    score: 4.0 bits;  conditional E-value: 0.01
   TIGR02209  25 qtrqlnselqklqaeieklqkewndLqlEvaels 58 
                 ++r l   lq+ +  + k+++++n+L +E+++l+
  MMETSP1137-20121227|1459_1 160 KLRPLKETLQRCKDTKAKADIKYNRLDAEKTALG 193
                 67788889999********************997 PP

  == domain 3    score: 3.8 bits;  conditional E-value: 0.011
   TIGR02209  26 trqlnselqklqaeieklqkewndLqlEvaelsrheRiek 65 
                 +  l++  ++lq++i++++ke +      +++  ++R+++
  MMETSP1137-20121227|1459_1 530 LKHLQNRKDQLQLKISAAEKEVGAFDSDAKKEEHRARLRE 569
                 45899***************************99999987 PP

  == domain 4    score: -0.6 bits;  conditional E-value: 0.27
   TIGR02209  29 lnselqklqaeieklqkewndLq 51 
                 +  elq+++a i++lq+  +d+q
  MMETSP1137-20121227|1459_1 612 AKHELQDVEAVIRQLQTSEKDAQ 634
                 55789999999999999877765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1014 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       406  (0.0989761); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.97u 0.16s 00:00:01.12 Elapsed: 00:00:00.83
# Mc/sec: 1612.49
//
Query:       MMETSP1137-20121227|1461_1  [L=55]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        41  (0.00999512); expected 82.0 (0.02)
Passed bias filter:                       39  (0.00950756); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.14s 00:00:00.26 Elapsed: 00:00:00.34
# Mc/sec: 213.51
//
Query:       MMETSP1137-20121227|1462_1  [L=369]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (369 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        53  (0.0129205); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.16s 00:00:00.42 Elapsed: 00:00:00.40
# Mc/sec: 1217.60
//
Query:       MMETSP1137-20121227|1463_1  [L=129]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (129 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        71  (0.0173086); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.11s 00:00:00.27 Elapsed: 00:00:00.27
# Mc/sec: 630.61
//
Query:       MMETSP1137-20121227|1464_1  [L=172]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (172 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        67  (0.0163335); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.16s 00:00:00.34 Elapsed: 00:00:00.66
# Mc/sec: 343.97
//
Query:       MMETSP1137-20121227|1466_1  [L=123]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00032   18.5   2.3      0.046   11.6   0.1    2.5  3  TIGR00012 L29: ribosomal protein L29
  ------ inclusion threshold ------
      0.039   10.6   0.0       0.63    6.6   0.0    1.9  2  TIGR03278 methan_mark_10: methanogenesis marker radical SAM protein


Domain annotation for each model (and alignments):
>> TIGR00012  L29: ribosomal protein L29
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.3   0.1     0.001       2.1       3      18 ..       9      24 ..       9      26 .. 0.93
   2 ?   -2.7   0.0      0.68   1.4e+03      15      28 ..      52      65 ..      49      69 .. 0.61
   3 !   11.6   0.1   2.2e-05     0.046       3      22 ..      94     113 ..      94     117 .. 0.93

  Alignments for each domain:
  == domain 1    score: 6.3 bits;  conditional E-value: 0.001
   TIGR00012  3 rekskeELakklkelK 18
                r++s +E+ak +kel 
  MMETSP1137-20121227|1466_1  9 RKMSLDEFAKLVKELQ 24
                99************96 PP

  == domain 2    score: -2.7 bits;  conditional E-value: 0.68
   TIGR00012 15 kelKkeLfeLRfqk 28
                + +K+ L++ R  +
  MMETSP1137-20121227|1466_1 52 DANKTGLLSVRELH 65
                56677777776544 PP

  == domain 3    score: 11.6 bits;  conditional E-value: 2.2e-05
   TIGR00012   3 rekskeELakklkelKkeLf 22 
                 r++s +E+ak +kelK+ L+
  MMETSP1137-20121227|1466_1  94 RKMSLDEFAKLVKELKAFLA 113
                 99**************9887 PP

>> TIGR03278  methan_mark_10: methanogenesis marker radical SAM protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   0.0   0.00031      0.63     222     263 ..       6      50 ..       4      68 .. 0.77
   2 ?    1.9   0.0     0.008        16     220     241 ..      89     110 ..      76     121 .. 0.81

  Alignments for each domain:
  == domain 1    score: 6.6 bits;  conditional E-value: 0.00031
   TIGR03278 222 eGikphtveefkelvreiakefnlrv.tGtP..lldPetgaPfal 263
                 +G ++ +++ef++lv+e ++    r  + tP   +dP ++a f  
  MMETSP1137-20121227|1466_1   6 DGDRKMSLDEFAKLVKELQAXXXXRPpAATPaaTVDPLVSAAFTK 50 
                 688999**************9998842456622689999999864 PP

  == domain 2    score: 1.9 bits;  conditional E-value: 0.008
   TIGR03278 220 iieGikphtveefkelvreiak 241
                   +G ++ +++ef++lv+e ++
  MMETSP1137-20121227|1466_1  89 DTDGDRKMSLDEFAKLVKELKA 110
                 568999999********99865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (123 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       108  (0.0263286); expected 82.0 (0.02)
Passed bias filter:                       97  (0.023647); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.19u 0.16s 00:00:00.35 Elapsed: 00:00:00.35
# Mc/sec: 463.85
//
Query:       MMETSP1137-20121227|1467_1  [L=243]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (243 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        87  (0.0212092); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.13s 00:00:00.34 Elapsed: 00:00:00.35
# Mc/sec: 916.38
//
Query:       MMETSP1137-20121227|1468_1  [L=771]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.7e-32  109.6   0.0    6.1e-32  108.8   0.0    1.3  1  TIGR02311 HpaI: 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase
    2.3e-27   94.0   0.0      5e-27   92.9   0.0    1.5  2  TIGR03239 GarL: 2-dehydro-3-deoxyglucarate aldolase
     0.0084   12.5   0.0      0.013   11.8   0.0    1.1  1  TIGR01064 pyruv_kin: pyruvate kinase


Domain annotation for each model (and alignments):
>> TIGR02311  HpaI: 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  108.8   0.0   4.5e-35   6.1e-32      14     188 ..     513     697 ..     506     760 .. 0.79

  Alignments for each domain:
  == domain 1    score: 108.8 bits;  conditional E-value: 4.5e-35
   TIGR02311  14 iGlwlgladsyaaeivagaGfdwllldgehapndvrtllsqlqalasyassPvvrpaigdtvl.ikrlldiGaqtllvPmvesaeqaeaavkavryPPkGirGvgsala.....r...asrfnripdylq.qadeeiclllqvetrealenleeiaaveGvdGvfiGPadlaaslGhlGnPshpe 188
                 +G  +  +++ aae+va+  +d++l+d++h++ d ++l + lqa+    ++ +vr   +d  + i++ ld+Ga  +lvP  ++a++ ++av+  +yP +G   vg + +     r      f  + dy+  + +e+  +  q+et+ealen+eei +veG+d  fiGP dla+++G + + + p 
  MMETSP1137-20121227|1468_1 513 LGCAINTSSPLAAELVASLDYDFVLIDQQHSAIDPEKLRNLLQAVHCARCHALVRVGGADDRIgIQQALDLGADGILVPCSKTADDIRKAVSCAKYPVRGPGSVGGTRSvflnlRpqlPGGFAGLIDYVVnTGNERAFVAAQIETNEALENIEEICKVEGLDCAFIGPGDLATDMGLVKEFGMPA 697
                 55566677899********************************************987665544*********************************9998888765321111221113468889999761568888999************************************987666655 PP

>> TIGR03239  GarL: 2-dehydro-3-deoxyglucarate aldolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.2   0.0       1.5   2.1e+03      72      96 ..     133     157 ..     131     159 .. 0.85
   2 !   92.9   0.0   3.7e-30     5e-27      13     186 ..     512     696 ..     506     722 .. 0.86

  Alignments for each domain:
  == domain 1    score: -4.2 bits;  conditional E-value: 1.5
   TIGR03239  72 nepviikrlldigfynllipfvesa 96 
                 ++pv i  ll +g  n   p  es 
  MMETSP1137-20121227|1468_1 133 DKPVTITSLLPVGDDNSCFPLPESL 157
                 579**********999999988775 PP

  == domain 2    score: 92.9 bits;  conditional E-value: 3.7e-30
   TIGR03239  13 liglwsalgnpitaevlglagfdwllldgehapndvltlipqlmalkdsasapvvrvp.lnepviikrlldigfynllipfvesaeeaeravaatryppeg......irgvsvaqrsn...rygtvadyf.kkindnitvlvqiesrkgvdavdeiaavdgvdgvfvgpsdlaaalgylgnpnhp 186
                  +g+ +  ++p++ae++   ++d++l+d +h+  d   l + l+a++ +   ++vrv  +++ + i++ ld+g   +l+p  ++a++ ++av++++yp  g       r v    r +    ++ + dy+ ++ n+   v  qie+++ +++++ei+ v+g+d+ f+gp+dla+ +g + + + p
  MMETSP1137-20121227|1468_1 512 ALGCAINTSSPLAAELVASLDYDFVLIDQQHSAIDPEKLRNLLQAVHCARCHALVRVGgADDRIGIQQALDLGADGILVPCSKTADDIRKAVSCAKYPVRGpgsvggTRSVFLNLRPQlpgGFAGLIDYVvNTGNERAFVAAQIETNEALENIEEICKVEGLDCAFIGPGDLATDMGLVKEFGMP 696
                 68999999************************************************973678899*********************************7652221115555555554322279999***7256799999*************************************987665555 PP

>> TIGR01064  pyruv_kin: pyruvate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.8   0.0   9.5e-06     0.013     205     251 ..     640     688 ..     636     694 .. 0.83

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 9.5e-06
   TIGR01064 205 vleekgakdvkiiaKiEnqegvknideIikas..dgimvARGDLGveip 251
                 ++ ++g++++ + a iE++e+++ni+eI k+   d   +  GDL  ++ 
  MMETSP1137-20121227|1468_1 640 YVVNTGNERAFVAAQIETNEALENIEEICKVEglDCAFIGPGDLATDMG 688
                 666789999*******************987444889999999877665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (771 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       109  (0.0265724); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.49u 0.17s 00:00:00.66 Elapsed: 00:00:00.67
# Mc/sec: 1518.86
//
Query:       MMETSP1137-20121227|1470_1  [L=322]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (322 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        97  (0.023647); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.16s 00:00:00.42 Elapsed: 00:00:00.37
# Mc/sec: 1148.66
//
Query:       MMETSP1137-20121227|1471_1  [L=537]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.058   11.6   1.1       0.38    8.9   0.1    2.2  2  TIGR02559 HrpB7: type III secretion protein HrpB7


Domain annotation for each model (and alignments):
>> TIGR02559  HrpB7: type III secretion protein HrpB7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.0     0.028   1.1e+02      25      72 ..     106     153 ..      90     155 .. 0.85
   2 ?    8.9   0.1   9.2e-05      0.38      56     104 ..     357     407 ..     319     411 .. 0.88

  Alignments for each domain:
  == domain 1    score: 0.9 bits;  conditional E-value: 0.028
   TIGR02559  25 eelraaleeadaelaekesqaeakedrldrhaarlddlatgtasltie 72 
                 +el  a e+++  lae  s+a     ++d++a  +  l +  a ++++
  MMETSP1137-20121227|1471_1 106 HELSSAVESLESILAEVDSAASTLGAAIDDFALHVVPLYACEACFSAD 153
                 567778899999999999999999999999999999999999999886 PP

  == domain 2    score: 8.9 bits;  conditional E-value: 9.2e-05
   TIGR02559  56 aarlddlatgtasl..tieallacrayrdvleeelgaaeqavaalraalqa 104
                 a +ld+l +g +sl   + +++ c  + dvl   l+ ++q  aa r  l+ 
  MMETSP1137-20121227|1471_1 357 ADALDALDAGVDSLlsNLSNVTRCSPFVDVLSSSLATLQQRTAATRHSLAD 407
                 6788999999999855599***************************99875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (537 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       247  (0.0602145); expected 82.0 (0.02)
Passed bias filter:                      110  (0.0268162); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.16s 00:00:00.56 Elapsed: 00:00:00.56
# Mc/sec: 1265.68
//
Query:       MMETSP1137-20121227|1472_1  [L=289]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (289 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        99  (0.0241346); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.16s 00:00:00.40 Elapsed: 00:00:00.33
# Mc/sec: 1155.90
//
Query:       MMETSP1137-20121227|1473_1  [L=1114]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1114 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        85  (0.0207216); expected 82.0 (0.02)
Passed bias filter:                       42  (0.0102389); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.61u 0.13s 00:00:00.74 Elapsed: 00:00:00.69
# Mc/sec: 2130.95
//
Query:       MMETSP1137-20121227|1474_1  [L=163]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.1e-09   33.5   0.1    0.00012   19.9   0.0    2.1  2  TIGR01018 rpsD_arch: ribosomal protein S4


Domain annotation for each model (and alignments):
>> TIGR01018  rpsD_arch: ribosomal protein S4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.4   0.1     6e-06     0.025      17      91 ..      20      94 ..       6     108 .. 0.84
   2 !   19.9   0.0   2.9e-08   0.00012     118     160 ..     103     145 ..      97     147 .. 0.85

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 6e-06
   TIGR01018 17 PwekerlerekklvakyglrnkkelWkaetllrkyrraarellala..dekrkkeaeallkrlvrlGildeenakld 91
                 w++e   re k++++y ++++ +    ++++  + + +  l +l+  d+ r + ++ ll++l+  G+++++  kl 
  MMETSP1137-20121227|1474_1 20 NWKSENNIREVKIIRRYHIQDREDYHEYNKIVGMVTKLTNMLKGLDprDPVRIEMTDMLLDKLYGCGLIQHK--KLT 94
                588888899**************************99999998888779999999**************954..444 PP

  == domain 2    score: 19.9 bits;  conditional E-value: 2.9e-08
   TIGR01018 118 tikqarqlivhghiavdgrvvtsPsylvkkeeekkidfakssP 160
                 t+ +   l+ +gh++v   +vt P++lv++  e+ +++  +s 
  MMETSP1137-20121227|1474_1 103 TLCRRVTLVEQGHVRVGPETVTDPAFLVTRAMEDYVTWVDTSK 145
                 555556799****************************999886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (163 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       177  (0.0431497); expected 82.0 (0.02)
Passed bias filter:                      148  (0.03608); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.20u 0.18s 00:00:00.38 Elapsed: 00:00:00.25
# Mc/sec: 860.57
//
Query:       MMETSP1137-20121227|1475_1  [L=67]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (67 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        32  (0.00780107); expected 82.0 (0.02)
Passed bias filter:                       30  (0.00731351); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.12s 00:00:00.24 Elapsed: 00:00:00.26
# Mc/sec: 340.13
//
Query:       MMETSP1137-20121227|1476_1  [L=442]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.8e-20   71.3  26.2    7.2e-17   59.7   9.0    2.9  3  TIGR00880 2_A_01_02: multidrug resistance protein
    3.3e-16   57.0   9.6    3.3e-16   57.0   6.7    1.9  2  TIGR00895 2A0115: MFS transporter, aromatic acid:H+ symporter (AAHS) family
    1.3e-12   45.2   6.9    1.5e-08   31.9   2.4    2.1  2  TIGR00881 2A0104: phosphoglycerate transporter family protein
      2e-12   45.1   2.4      2e-12   45.1   1.7    1.5  2  TIGR00710 efflux_Bcr_CflA: drug resistance transporter, Bcr/CflA subfamily
    5.3e-12   43.0   5.2    9.4e-12   42.2   1.1    2.0  2  TIGR00711 efflux_EmrB: drug resistance MFS transporter, drug:H+ antiporter-2 (14 Spanner) (DHA2) family
    7.2e-11   39.5   9.8    3.1e-10   37.4   1.2    2.3  2  TIGR00893 2A0114: D-galactonate transporter
    4.1e-06   23.8   8.2    4.1e-06   23.8   5.7    1.6  2  TIGR00890 2A0111: oxalate/formate antiporter
    6.9e-06   22.7   2.9      1e-05   22.1   2.0    1.2  1  TIGR00894 2A0114euk: Na(+)-dependent inorganic phosphate cotransporter
    1.5e-05   21.8   3.0    1.5e-05   21.8   2.1    1.5  2  TIGR00898 2A0119: cation transport protein
    1.5e-05   22.1   0.2    2.2e-05   21.5   0.2    1.3  1  TIGR00899 2A0120: sugar efflux transporter
    1.9e-05   21.7   2.7    4.2e-05   20.6   1.8    1.5  1  TIGR00891 2A0112: MFS transporter, sialate:H+ symporter (SHS) family
    7.7e-05   19.2  11.6    7.7e-05   19.2   8.1    2.1  2  TIGR00879 SP: MFS transporter, sugar porter (SP) family
  ------ inclusion threshold ------
      0.023   10.4   6.3      0.036    9.7   4.4    1.3  1  TIGR01299 synapt_SV2: synaptic vesicle protein SV2


Domain annotation for each model (and alignments):
>> TIGR00880  2_A_01_02: multidrug resistance protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.7   9.0   2.3e-19   7.2e-17       8     138 ..      41     168 ..      35     171 .. 0.91
   2 ?    0.0   0.0      0.57   1.8e+02      55      84 ..     194     223 ..     189     230 .. 0.83
   3 !   16.7   2.7   4.1e-06    0.0013      49     134 ..     290     381 ..     283     383 .. 0.82

  Alignments for each domain:
  == domain 1    score: 59.7 bits;  conditional E-value: 2.3e-19
   TIGR00880   8 AlgqlvvsplsglltdrvGrkpvllvglfifvlsqllfalssnitvliiarilqGfgaaaalvagaaliadiikeeersvalgllsagialgpilGpllGavlaqalgwralflilallallafilllfll 138
                 + g ++v+ l++   +   r  +l+++l+i +++ +++a+s +++ l++ar+l G+  + al+ + ++i d+++e++r++  g + +++++g + G  lG++l++algwra+f++++l ++  ++++  l+
  MMETSP1137-20121227|1476_1  41 GPGAIIVGVLAD---SGHNRVLLLVGSLVIGAIGCAATAASASLVHLFVARALTGVCLGCALPLAFSIIGDMFDETTRTALSGRIGLAMVMGTVCGQGLGGWLGPALGWRAPFIVISLCMASLAAAVSQLM 168
                 667889999999...88999999999****************************************************************************************99988777666666665 PP

  == domain 2    score: 0.0 bits;  conditional E-value: 0.57
   TIGR00880  55 iiarilqGfgaaaalvagaaliadiikeee 84 
                 i++ +lqG+ + + + + aa + d+   + 
  MMETSP1137-20121227|1476_1 194 ILLVFLQGVPGCVPWGVLAAFLPDFLHVNS 223
                 67789*****************99987665 PP

  == domain 3    score: 16.7 bits;  conditional E-value: 4.1e-06
   TIGR00880  49 snitvliiarilqGfgaaaalvagaaliadiikeeersvalgllsagialgpilGpllGavla......qalgwralflilallallafill 134
                 +++t+ ++   ++Gf+aa   ++++a+++ ++++e+r+ a++ ++++  lg  +Gp++ a+l+       al+ ++l++i ++l+  a++l+
  MMETSP1137-20121227|1476_1 290 RTMTSSCVVASVGGFFAAQTGPVIRATLSNVTSSEQRGIAFAAFAIFDDLGKGFGPVAIAALIralgraRALELSMLLWIPCALCNGAVALT 381
                 56777889999**********************************************99999954444444555677777777776666655 PP

>> TIGR00895  2A0115: MFS transporter, aromatic acid:H+ symporter (AAHS) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.0   6.7     1e-18   3.3e-16      40     189 ..      11     165 ..       2     183 .. 0.84
   2 ?   -1.4   0.8      0.59   1.9e+02     338     398 .]     292     352 ..     280     352 .. 0.81

  Alignments for each domain:
  == domain 1    score: 57.0 bits;  conditional E-value: 1e-18
   TIGR00895  40 apalskewgld...kvelGfllsagLiGmv.lGallfgplaDrig.RkrvllvsillfsvftlasalatnvtqLlvlRflaglGlGgllpnliaLvsEyapkrfratvvglvavGyaiGaavggllaallipafgWrslflvggiipllllllli 189
                  +a ++++gld   k ++G ll++gL+ +   Ga+++g+laD    R+ +l+ s+++ +++ +a+a + +++ L v+R+l+g+ lG +lp ++ ++ +   +  r+ + g + +  ++G++ g  l+++l pa+gWr  f+v ++  + l++ + 
  MMETSP1137-20121227|1476_1  11 MSACAADLGLDskgKDDMGGLLAFGLFVVGgPGAIIVGVLADSGHnRVLLLVGSLVIGAIGCAATAASASLVHLFVARALTGVCLGCALPLAFSIIGDMFDETTRTALSGRIGLAMVMGTVCGQGLGGWLGPALGWRAPFIVISLCMASLAAAVS 165
                 566777888873334589********977438**********86527777777777777888889999*************************************************************************98777666666655 PP

  == domain 2    score: -1.4 bits;  conditional E-value: 0.59
   TIGR00895 338 ptllllllvilGlfvngaqsgllalmaefYptaiRatgvgwaigiGrlgaiigpilagvll 398
                 +t   +++ + G+f++    ++ a+ +++ +++ R+ + +       lg  +gp+ ++ l+
  MMETSP1137-20121227|1476_1 292 MTSSCVVASVGGFFAAQTGPVIRATLSNVTSSEQRGIAFAAFAIFDDLGKGFGPVAIAALI 352
                 4445566677799999999999999999999999999999999999999999999999886 PP

>> TIGR00881  2A0104: phosphoglycerate transporter family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.9   2.4   4.7e-11   1.5e-08      29     178 ..      25     175 ..       6     184 .. 0.89
   2 !   14.7   0.0   8.2e-06    0.0026      84     190 ..     293     401 ..     281     422 .. 0.76

  Alignments for each domain:
  == domain 1    score: 31.9 bits;  conditional E-value: 4.7e-11
   TIGR00881  29 ktdlG.lllsafsiaYgiskfvvgvvsDrvsarvflaig.LilvaivnlflgfssslwvliallalnGlfqglgwppcgrlltkwfsrserGtvvaiwnishnvggallpplvllaialllswhvvfivpgiiaiivslilllllrdspqsv 178
                 k+d+G ll+ +  ++ g + ++vgv++D   +rv+l++g L+  ai     ++s sl+ l++++al+G+  g + p++ +++   f++++r  + +    ++ +g     + +  ++   l w++ fiv ++++  ++  +  l+ d+p+++
  MMETSP1137-20121227|1476_1  25 KDDMGgLLAFGLFVVGGPGAIIVGVLADSGHNRVLLLVGsLVIGAIGCAATAASASLVHLFVARALTGVCLGCALPLAFSIIGDMFDETTRTALSGRIGLAMVMGTVCGQG-LGGWLGPALGWRAPFIVISLCMASLAAAVSQLMTDPPRAE 175
                 678853777788899999************9999999985777778888899999**************************************************999998.999*******************999999999999999875 PP

  == domain 2    score: 14.7 bits;  conditional E-value: 8.2e-06
   TIGR00881  84 wvliallalnGlfqglgwppcgrlltkwfsrserGtvvaiwnishnvggallpplvllaialllswhvv...fivpgiiaiivslilllllrdspqsvglpkleelrnee 190
                 ++  ++  + G+f +   p+   +l + +s ++rG ++a ++i   +g ++ p  +++ i+ l + +++   +++   +a+  + ++l ++ d+   v ++++ +l nee
  MMETSP1137-20121227|1476_1 293 TSSCVVASVGGFFAAQTGPVIRATLSNVTSSEQRGIAFAAFAIFDDLGKGFGPVAIAALIRALGRARALelsMLLWIPCALCNGAVALTVIDDEA-RVRQRSALKLSNEE 401
                 5556667788*******************************************888888999999998888755555568999999999987764.34455555555555 PP

>> TIGR00710  efflux_Bcr_CflA: drug resistance transporter, Bcr/CflA subfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.1   1.7   6.3e-15     2e-12      54     208 ..      41     194 ..      13     214 .. 0.88
   2 ?   -3.1   0.1       2.6   8.3e+02     215     249 ..     297     331 ..     281     373 .. 0.54

  Alignments for each domain:
  == domain 1    score: 45.1 bits;  conditional E-value: 6.3e-15
   TIGR00710  54 avgqLllGplsDsyGRkpvlLlg.llvfalsslvlalsenietllvlRflqafgasaalVisqalvrDiyakeelskvysilmlllalaPllapliGgyvlvflsWhaiFavlsligillvaliflllpeTkakekriqistsvetfllllkdkel 208
                 + g +++G l+Ds   +  lL+g l+++a++  + a s +   l v+R l ++    al + ++++ D++ +     + + ++l +++  + +  +Gg++ + l+W+a F+v+sl +  l+a++ +l+  T ++++ +++  ++++ ++ll+  ++
  MMETSP1137-20121227|1476_1  41 GPGAIIVGVLADSGHNRVLLLVGsLVIGAIGCAATAASASLVHLFVARALTGVCLGCALPLAFSIIGDMFDETTRTALSGRIGLAMVMGTVCGQGLGGWLGPALGWRAPFIVISLCMASLAAAVSQLM--TDPPRAESKADGDTQHCTSLLRVPTI 194
                 56899********88888888883567899999999************************************9*************************************************999998..55666667777777777777776555 PP

  == domain 2    score: -3.1 bits;  conditional E-value: 2.6
   TIGR00710 215 vgassgglfaflsaapfvlidimgv.spevfgllfa 249
                 v as gg+fa    +p++     +v s e+ g+ fa
  MMETSP1137-20121227|1476_1 297 VVASVGGFFAA-QTGPVIRATLSNVtSSEQRGIAFA 331
                 33444444442.234444443333312334444443 PP

>> TIGR00711  efflux_EmrB: drug resistance MFS transporter, drug:H+ antiporter-2 (14 Spanner) (DHA2) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.2   1.1     3e-14   9.4e-12      53     167 ..      43     157 ..       3     198 .. 0.79
   2 ?    2.3   0.1     0.039        12      99     144 ..     301     346 ..     290     389 .. 0.90

  Alignments for each domain:
  == domain 1    score: 42.2 bits;  conditional E-value: 3e-14
   TIGR00711  53 vIpltgwlakrlgerklflvsvlaF.tlssllcgvannlelliifRviQgfggglliplseslllseyppekrglalalvglavlvaPvlGPiLgGwiieayeWrwiFlinvpiGi 167
                    ++g la+   +r l lv+ l+  +++  + + + +l  l ++R++ g+  g   pl++s++   +  + r+   + +gla++++ v+G  LgGw+  a+ Wr  F + + + +
  MMETSP1137-20121227|1476_1  43 GAIIVGVLADSGHNRVLLLVGSLVIgAIGCAATAASASLVHLFVARALTGVCLGCALPLAFSIIGDMFDETTRTALSGRIGLAMVMGTVCGQGLGGWLGPALGWRAPFIV-ISLCM 157
                 5567888888888888888866654289999999999********************************************************************98865.33334 PP

  == domain 2    score: 2.3 bits;  conditional E-value: 0.039
   TIGR00711  99 iQgfggglliplseslllseyppekrglalalvglavlvaPvlGPi 144
                 + gf+++   p+  ++l +   +e+rg+a a +++   ++  +GP+
  MMETSP1137-20121227|1476_1 301 VGGFFAAQTGPVIRATLSNVTSSEQRGIAFAAFAIFDDLGKGFGPV 346
                 6799999************************999877777777775 PP

>> TIGR00893  2A0114: D-galactonate transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.4   1.2   9.7e-13   3.1e-10      21     179 ..      15     178 ..       3     220 .. 0.85
   2 !    6.7   0.9     0.002      0.63     314     376 ..     295     357 ..     280     382 .. 0.81

  Alignments for each domain:
  == domain 1    score: 37.4 bits;  conditional E-value: 9.7e-13
   TIGR00893  21 kedLglsaaqyglvfsafsigyvlfqlpggllldri...G.akktlav.aivlWglftllqafatalvslivlRvllGlaEaplfPgiikivasWFPakeratavsifnsaqalgaiiggplvgwilvefsWqlvFiieGvlaiilgvlilkvikdkpekakvl 179
                   dLgl+++    +  + ++g+++++ pg +++  +   G  ++ l v ++v+ ++ ++++a+  +lv l+v+R+l+G+  + + P    i+   F ++ r + +++  +a  +g++ g+ l gw+  +++W++ Fi++ +  + l+ ++  +++d+p+     
  MMETSP1137-20121227|1476_1  15 AADLGLDSKGKDDMGGLLAFGLFVVGGPGAIIVGVLadsGhNRVLLLVgSLVIGAIGCAATAASASLVHLFVARALTGVCLGCALPLAFSIIGDMFDETTRTALSGRIGLAMVMGTVCGQGLGGWLGPALGWRAPFIVISLCMASLAAAVSQLMTDPPRAESKA 178
                 57999999999999999999999988776655444411132677665525666666677788777***************************************************************************999999999999999999866554 PP

  == domain 2    score: 6.7 bits;  conditional E-value: 0.002
   TIGR00893 314 aalalvalaffgkglaailwavisdvlskeiagltgGlinllGnlagivgPivigaiaattGs 376
                  +++  + +ff+++ + ++ a  s+v s e  g++ +++ ++  l+  +gP +i a+  + G 
  MMETSP1137-20121227|1476_1 295 SCVVASVGGFFAAQTGPVIRATLSNVTSSEQRGIAFAAFAIFDDLGKGFGPVAIAALIRALGR 357
                 444444446777777*****************************************9999883 PP

>> TIGR00890  2A0111: oxalate/formate antiporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.8   5.7   1.3e-08   4.1e-06     254     371 ..      41     157 ..      17     164 .. 0.86
   2 ?   -2.1   0.1      0.99   3.1e+02      53      77 ..     297     321 ..     287     358 .. 0.69

  Alignments for each domain:
  == domain 1    score: 23.8 bits;  conditional E-value: 1.3e-08
   TIGR00890 254 gggRlvlGavsDkigrlktmsi..vlsisavlllslllikkisdvlflAlvalvaftiGgtfslfpslvskifgkknsaanyGllytakavagilggliaslvlteiGfeatllvtaala 371
                 g g +++G+++D   + +++ +  +l+i+a++ ++ ++ ++++  lf+A  al+++++G  + l  s+ +++f +   +a  G + +a+ ++ ++g  +++ +   +G++a ++v+  ++
  MMETSP1137-20121227|1476_1  41 GPGAIIVGVLADSG-HNRVLLLvgSLVIGAIGCAATAASASLVH-LFVAR-ALTGVCLGCALPLAFSIIGDMFDETTRTALSGRIGLAMVMGTVCGQGLGGWLGPALGWRAPFIVISLCM 157
                 4567899*****84.444444412589*************9999.89987.89*************************************************************997443 PP

  == domain 2    score: -2.1 bits;  conditional E-value: 0.99
   TIGR00890  53 lsqvvgGkladkfGpravallggil 77 
                 +  +vgG +a + Gp + a l+ + 
  MMETSP1137-20121227|1476_1 297 VVASVGGFFAAQTGPVIRATLSNVT 321
                 4456677777777777666666654 PP

>> TIGR00894  2A0114euk: Na(+)-dependent inorganic phosphate cotransporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.1   2.0   3.3e-08     1e-05      94     225 ..      45     174 ..      28     184 .. 0.87

  Alignments for each domain:
  == domain 1    score: 22.1 bits;  conditional E-value: 3.3e-08
   TIGR00894  94 ipvGylakk.ygtkkvigaalllssvlslliPiaaavgvalvivlRvlqGlaeglvspaqhellakWiPPkERsrlvsavlsGaqlGtlivlpisGlicesdlgWpavfYifgivgtvvlilwlvlvyddPse 225
                 i vG+la+   +  ++++ +l+++ + ++   +aa ++ + ++v R+l+G+  g + p  ++++   +    R+ l + +   +++Gt+    ++G++    lgW a f +++++ + +  +   l+ d P  
  MMETSP1137-20121227|1476_1  45 IIVGVLADSgHNRVLLLVGSLVIGAIGCAA--TAASASLVHLFVARALTGVCLGCALPLAFSIIGDMFDETTRTALSGRIGLAMVMGTVCGQGLGGWLGPA-LGWRAPFIVISLCMASLAAAVSQLMTDPPRA 174
                 678888886245556778889999998875..79999***************************************9988777***************999.9**************9999999999999875 PP

>> TIGR00898  2A0119: cation transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.8   2.1   4.6e-08   1.5e-05     142     256 ..      43     161 ..      21     177 .. 0.86
   2 ?   -3.0   0.2       1.6     5e+02     374     405 ..     347     378 ..     344     382 .. 0.79

  Alignments for each domain:
  == domain 1    score: 21.8 bits;  conditional E-value: 4.6e-08
   TIGR00898 142 GslvlGqlsDr.fGRkkvLllstlvtavsgvltafspnytvflvlrlLvGvgiagivvvalvLitEflpkkaRaivgilievffalGllllallA.Ylird..WRwLlllvslPlvlfl 256
                 G++++G l+D+   R  +L+ s ++ a+    ta+s ++  + v r L+Gv ++ + + a+ +i  + +  +R+  +  i ++  +G+++  +l+ +l +   WR+  +++sl +   +
  MMETSP1137-20121227|1476_1  43 GAIIVGVLADSgHNRVLLLVGSLVIGAIGCAATAASASLVHLFVARALTGVCLGCALPLAFSIIGDMFDETTRTALSGRIGLAMVMGTVCGQGLGgWLGPAlgWRAPFIVISLCMASLA 161
                 99*********6777777777777888888899*********************************************************9998538888899**99999998766554 PP

  == domain 2    score: -3.0 bits;  conditional E-value: 1.6
   TIGR00898 374 itlllidrLgRrktmaaslllagvallllllv 405
                 ++  li+ LgR  ++ +s+ll + + l + +v
  MMETSP1137-20121227|1476_1 347 AIAALIRALGRARALELSMLLWIPCALCNGAV 378
                 56678999999999999999988888877666 PP

>> TIGR00899  2A0120: sugar efflux transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.5   0.2     7e-08   2.2e-05      49     204 ..      43     196 ..      21     220 .. 0.87

  Alignments for each domain:
  == domain 1    score: 21.5 bits;  conditional E-value: 7e-08
   TIGR00899  49 vsqllakasDkqgdrkkLilaclllavlaavlfalnrnYlvllvlgvlLsslastavPqlfaLarehadetgreavmfssvlRaqisLawvigpplafaLalgfafavmflaaavalvvaavlvtllLPsvakeapkaltalevrgllakrdvrlL 204
                    +++  +D+  +r+ L++ +l+++++ +   a + + + l v   l       a P+ f++  +  det+r    +s+ + + + ++ v g  l ++L   +++ + f+++++ +   a+ v  l+   ++ + ka    +  + l + ++ lL
  MMETSP1137-20121227|1476_1  43 GAIIVGVLADSGHNRVLLLVGSLVIGAIGCAATAASASLVHLFVARALTGVCLGCALPLAFSIIGDMFDETTRT--ALSGRIGLAMVMGTVCGQGLGGWLGPALGWRAPFIVISLCMASLAAAVSQLMTDPPRAESKADGDTQHCTSLLRVPTILL 196
                 556778899*************************99999999999999999999*******************9..789*************************************9999999999999999999888876666655555555555 PP

>> TIGR00891  2A0112: MFS transporter, sialate:H+ symporter (SHS) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   1.8   1.3e-07   4.2e-05      57     176 ..      37     156 ..      20     183 .. 0.84

  Alignments for each domain:
  == domain 1    score: 20.6 bits;  conditional E-value: 1.3e-07
   TIGR00891  57 livrsvGalllGlwaDrvgrr.lplvtsvvlfsvatllcafaptyekllivrlviGigmgGeyGlaaalaiedvPkklrsvlsGllisgyavGfvlaavvysvvvnvlgdsWriLff.lsil 176
                 ++v   Ga+++G++aD    r l lv s+v+ +++  ++a + + + l+++r ++G+ +g    la ++  +     +r+ lsG +  +  +G v    +   +++ lg  Wr+ f  +s+ 
  MMETSP1137-20121227|1476_1  37 FVVGGPGAIIVGVLADSGHNRvLLLVGSLVIGAIGCAATAASASLVHLFVARALTGVCLGCALPLAFSIIGDMFDETTRTALSGRIGLAMVMGTVCGQGLGGWLGPALG--WRAPFIvISLC 156
                 456678**********97655156677999999999*****************************99999999999********************9999999999999..**988614444 PP

>> TIGR00879  SP: MFS transporter, sugar porter (SP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   8.1   2.5e-07   7.7e-05     109     237 ..      37     161 ..      28     173 .. 0.79
   2 ?   -0.1   0.3      0.17        55      66     146 ..     303     375 ..     279     382 .. 0.48

  Alignments for each domain:
  == domain 1    score: 19.2 bits;  conditional E-value: 2.5e-07
   TIGR00879 109 lvGgligalfagylsdrfgrkkslliiallfvigailsllaatalsvevlivgRvllGigvGiasalvPlYisEiApkalRgalvslyqlaitfGilvaaifgsgklvanntlgwriplgl.qlipalll 237
                 +v g  ga+++g l d+  ++  ll+++l++ + ++   +a+ +l    l+v+R+l G ++G+a  l+ + i  +  +  R al + + la+++G + ++++g     ++ +lgwr+p+ + +l +a l 
  MMETSP1137-20121227|1476_1  37 FVVGGPGAIIVGVLADSGHNRVLLLVGSLVIGAIGCAATAASASLV--HLFVARALTGVCLGCALPLAFSIIGDMFDETTRTALSGRIGLAMVMGTVCGQGLG---GWLGPALGWRAPFIViSLCMASLA 161
                 4445579*****8887776666666776655555555555555555..*******************************************************...9999********998444444333 PP

  == domain 2    score: -0.1 bits;  conditional E-value: 0.17
   TIGR00879  66 gllfgYdtavisaalallkfefkftsnlsdasssqwglvvsillvGgligalfagylsdrfgrkkslliiallfvigails 146
                 g+       vi a+l+ +    + +        +  + ++ +  +G  +g + +  l++ +gr ++l  + ll++  a+ +
  MMETSP1137-20121227|1476_1 303 GFFAAQTGPVIRATLSNVTSSEQRG--------IAFAAFAIFDDLGKGFGPVAIAALIRALGRARALELSMLLWIPCALCN 375
                 3333333333333333333333322........222233333334566666666666666666666666666666555555 PP

>> TIGR01299  synapt_SV2: synaptic vesicle protein SV2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   4.4   0.00012     0.036     193     320 ..      14     146 ..       8     163 .. 0.79

  Alignments for each domain:
  == domain 1    score: 9.7 bits;  conditional E-value: 0.00012
   TIGR01299 193 aekdlclsdsnkgllglivylgmmv....gaflwggladklgrkqsllislsvnsvf.aflssfvqgygtfllcrllsgvgiggaipivfsyfaevlarekrgehlswlcmfwmiggvyaaamawaiiphygw 320
                 +  dl l   +k  +g ++ +g++v    ga++ g lad    +  ll+   v + + +  ++       ++++r l+gv +g a+p+ fs + +++ +  r      + +  ++g v    +   + p  gw
  MMETSP1137-20121227|1476_1  14 CAADLGLDSKGKDDMGGLLAFGLFVvggpGAIIVGVLADSGHNRVLLLVGSLVIGAIgCAATAASASLVHLFVARALTGVCLGCALPLAFSIIGDMFDETTRTALSGRIGLAMVMGTVCGQGLGGWLGPALGW 146
                 467999999999999999999988767778*********98888888875555555504455555566666779**********************9999998777777777778888877777667777777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (442 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       157  (0.038274); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                        20  (0.00487567); expected 4.1 (0.001)
Passed Fwd filter:                        13  (0.00316919); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.45u 0.11s 00:00:00.56 Elapsed: 00:00:00.66
# Mc/sec: 883.93
//
Query:       MMETSP1137-20121227|1477_1  [L=183]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (183 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        90  (0.0219405); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.15s 00:00:00.34 Elapsed: 00:00:00.48
# Mc/sec: 503.21
//
Query:       MMETSP1137-20121227|1478_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        39  (0.00950756); expected 82.0 (0.02)
Passed bias filter:                       33  (0.00804486); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.15s 00:00:00.26 Elapsed: 00:00:00.35
# Mc/sec: 192.33
//
Query:       MMETSP1137-20121227|1479_1  [L=56]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        39  (0.00950756); expected 82.0 (0.02)
Passed bias filter:                       39  (0.00950756); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.13s 00:00:00.25 Elapsed: 00:00:00.28
# Mc/sec: 254.88
//
Query:       MMETSP1137-20121227|1480_1  [L=388]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (388 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        48  (0.0117016); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.15s 00:00:00.42 Elapsed: 00:00:00.53
# Mc/sec: 966.26
//
Query:       MMETSP1137-20121227|1481_1  [L=78]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (78 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        51  (0.012433); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.12s 00:00:00.26 Elapsed: 00:00:00.49
# Mc/sec: 210.11
//
Query:       MMETSP1137-20121227|1482_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        27  (0.00658216); expected 82.0 (0.02)
Passed bias filter:                       26  (0.00633837); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.15s 00:00:00.28 Elapsed: 00:00:00.30
# Mc/sec: 233.18
//
Query:       MMETSP1137-20121227|1483_1  [L=177]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (177 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        50  (0.0121892); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.13s 00:00:00.32 Elapsed: 00:00:00.34
# Mc/sec: 687.12
//
Query:       MMETSP1137-20121227|1484_1  [L=66]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (66 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        31  (0.00755729); expected 82.0 (0.02)
Passed bias filter:                       30  (0.00731351); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.17s 00:00:00.29 Elapsed: 00:00:00.28
# Mc/sec: 300.39
//
Query:       MMETSP1137-20121227|1485_1  [L=97]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (97 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        85  (0.0207216); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.13s 00:00:00.27 Elapsed: 00:00:00.27
# Mc/sec: 474.18
//
Query:       MMETSP1137-20121227|1486_1  [L=388]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (388 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       206  (0.0502194); expected 82.0 (0.02)
Passed bias filter:                      155  (0.0377864); expected 82.0 (0.02)
Passed Vit filter:                        18  (0.0043881); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.16s 00:00:00.49 Elapsed: 00:00:00.43
# Mc/sec: 1190.97
//
Query:       MMETSP1137-20121227|1487_1  [L=282]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (282 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        67  (0.0163335); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.17s 00:00:00.41 Elapsed: 00:00:00.39
# Mc/sec: 954.38
//
Query:       MMETSP1137-20121227|1488_1  [L=105]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (105 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        46  (0.011214); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.25
# Mc/sec: 554.35
//
Query:       MMETSP1137-20121227|1489_1  [L=218]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.15    8.3   9.7       0.16    8.2   6.7    1.2  1  TIGR02442 Cob-chelat-sub: cobaltochelatase subunit
       0.23    6.8  10.0       0.24    6.8   6.9    1.1  1  TIGR00927 2A1904: K+-dependent Na+/Ca+ exchanger


Domain annotation for each model (and alignments):
>> TIGR02442  Cob-chelat-sub: cobaltochelatase subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   6.7   7.6e-05      0.16     281     403 ..      57     184 ..       6     207 .. 0.66

  Alignments for each domain:
  == domain 1    score: 8.2 bits;  conditional E-value: 7.6e-05
   TIGR02442 281 aralAAldgrrevteedvreaaeLvlkhRrr..rkpfeee..qekeek.kleekkeeakpdeekedeseekekeeskkqeeeepgkddekeedekeeaeeeaesaeevalepagkifrvkllavskar 403
                 ara+  l gr + +++ ++ a   + +  +    +p  ++  ++ + + +++ + e++  d++++d++   +ke++++++ e ++ ++++ ++e e++++++ ++++ +++ + k+f++++ a  + r
  MMETSP1137-20121227|1489_1  57 ARANSSLGGRGRNSNAGIMGAKATAARKGALipASPKGKAkkKSADADkDEDLTAEAPLADKDTTDNNMTPDKEDKTDNNGEGNEPQEDQGQEELESTSSREANTPKIDISDQTKVFKIETAAKDRPR 184
                 67777777777777777766665554444443333333332223333303333333444777777777555555545555445555555555555555555555778888888888888887766554 PP

>> TIGR00927  2A1904: K+-dependent Na+/Ca+ exchanger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   6.9   0.00011      0.24     752     824 ..      95     167 ..      13     202 .. 0.65

  Alignments for each domain:
  == domain 1    score: 6.8 bits;  conditional E-value: 0.00011
   TIGR00927 752 eakgertgeeaeaeteaegekdeesggeaeqegeseekaeeeseGeieaerkgedegegeieakeaevkGeee 824
                 +ak ++ + +++++ +ae++  +++ ++++   ++e+k++++ eG+ + e +g++e e+    + +  k +  
  MMETSP1137-20121227|1489_1  95 KAKKKSADADKDEDLTAEAPLADKDTTDNNMTPDKEDKTDNNGEGNEPQEDQGQEELESTSSREANTPKIDIS 167
                 2222233333344467888889999999999999999999999999999999999888776666544444433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (218 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        60  (0.014627); expected 82.0 (0.02)
Passed bias filter:                       41  (0.00999512); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.25u 0.14s 00:00:00.39 Elapsed: 00:00:00.39
# Mc/sec: 737.79
//
Query:       MMETSP1137-20121227|1490_1  [L=419]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (419 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        91  (0.0221843); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.16s 00:00:00.44 Elapsed: 00:00:00.44
# Mc/sec: 1256.90
//
Query:       MMETSP1137-20121227|1491_1  [L=479]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.097    9.5   0.6       0.16    8.7   0.4    1.3  1  TIGR03782 Bac_Flav_CT_J: Bacteroides conjugative transposon TraJ protein


Domain annotation for each model (and alignments):
>> TIGR03782  Bac_Flav_CT_J: Bacteroides conjugative transposon TraJ protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   0.4     4e-05      0.16     101     157 ..      63     121 ..      51     146 .. 0.79

  Alignments for each domain:
  == domain 1    score: 8.7 bits;  conditional E-value: 4e-05
   TIGR03782 101 lkkyrekkdklekealvrdpekaylvsdeefdkkleelGwspsdlktlagl..yaeraa 157
                  ++ r++k+k e ea  r  +k++ +s ++ +++ + +G++p d++   g   + ++aa
  MMETSP1137-20121227|1491_1  63 KNQKRKEKKKQEAEAAPRTSQKSHTSSGQAEEQRADADGATPADANGDGGAeaASDKAA 121
                 4667899999**********************************986655422455555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (479 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       257  (0.0626524); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.16s 00:00:00.55 Elapsed: 00:00:00.74
# Mc/sec: 854.36
//
Query:       MMETSP1137-20121227|1492_1  [L=80]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (80 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        83  (0.020234); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.11s 00:00:00.24 Elapsed: 00:00:00.23
# Mc/sec: 459.09
//
Query:       MMETSP1137-20121227|1493_1  [L=242]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (242 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        55  (0.0134081); expected 82.0 (0.02)
Passed bias filter:                       31  (0.00755729); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.11s 00:00:00.30 Elapsed: 00:00:00.42
# Mc/sec: 760.51
//
Query:       MMETSP1137-20121227|1494_1  [L=404]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (404 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        89  (0.0216967); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.14s 00:00:00.45 Elapsed: 00:00:00.49
# Mc/sec: 1088.24
//
Query:       MMETSP1137-20121227|1495_1  [L=183]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (183 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        71  (0.0173086); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.14s 00:00:00.32 Elapsed: 00:00:00.39
# Mc/sec: 619.33
//
Query:       MMETSP1137-20121227|1496_1  [L=182]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (182 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       107  (0.0260848); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.15s 00:00:00.32 Elapsed: 00:00:00.32
# Mc/sec: 750.69
//
Query:       MMETSP1137-20121227|1497_1  [L=1361]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1361 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       105  (0.0255973); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.74u 0.15s 00:00:00.89 Elapsed: 00:00:00.60
# Mc/sec: 2993.95
//
Query:       MMETSP1137-20121227|1498_1  [L=730]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (730 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       153  (0.0372989); expected 82.0 (0.02)
Passed bias filter:                       98  (0.0238908); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.47u 0.15s 00:00:00.62 Elapsed: 00:00:00.72
# Mc/sec: 1338.22
//
Query:       MMETSP1137-20121227|1499_1  [L=314]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.5e-23   80.1   0.2    4.1e-23   79.4   0.1    1.3  1  TIGR00952 S15_bact: ribosomal protein S15


Domain annotation for each model (and alignments):
>> TIGR00952  S15_bact: ribosomal protein S15
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.4   0.1     1e-26   4.1e-23       7      86 .]      97     176 ..      91     176 .. 0.95

  Alignments for each domain:
  == domain 1    score: 79.4 bits;  conditional E-value: 1e-26
   TIGR00952   7 eiikefqlhekDtGsaevqiallterikkLteHlkankkDhssrrgLlklvgkRrrLlkylkkkdverYrelikkLglrk 86 
                 e ++ +ql  +DtGs+ vqia+lt++i+ L  Hl+a+kkD +++r +   v+ R +Ll+yl+++d ++Y+e+++kL++r+
  MMETSP1137-20121227|1499_1  97 EAMHPWQLAPNDTGSTPVQIAVLTKKIEFLARHLEAHKKDPAAKRFIQMRVSERSKLLQYLRRQDRAKYEEILEKLNIRR 176
                 5577789999********************************************************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (314 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       133  (0.0324232); expected 82.0 (0.02)
Passed bias filter:                      110  (0.0268162); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.27u 0.18s 00:00:00.45 Elapsed: 00:00:00.54
# Mc/sec: 767.49
//
Query:       MMETSP1137-20121227|1500_1  [L=533]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.2e-13   48.8   0.2      4e-13   47.2   0.1    1.7  1  TIGR01275 ACC_deam_rel: pyridoxal phosphate-dependent enzymes, D-cysteine desulfhydrase family
  ------ inclusion threshold ------
      0.013   12.5   0.1       0.05   10.6   0.0    1.8  2  TIGR01274 ACC_deam: 1-aminocyclopropane-1-carboxylate deaminase


Domain annotation for each model (and alignments):
>> TIGR01275  ACC_deam_rel: pyridoxal phosphate-dependent enzymes, D-cysteine desulfhydrase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.2   0.1   1.9e-16     4e-13      24     201 ..     128     308 ..     110     333 .. 0.77

  Alignments for each domain:
  == domain 1    score: 47.2 bits;  conditional E-value: 1.9e-16
   TIGR01275  24 iyikrDDltglelsGnkirkLefLla...........ealkkgadtvitvGaiqsnharatalvakklgLkavllLrkskkvadedeelkGnlLldkllgaevrvvsaeeyeeiealleelkeklekeGkkpyviPvGGsnslGalGyveavleiaeqlnlesevkfdsivvaaGsgGtiaGlslGlsa 201
                  y+kr+Dl     +Gnk+r L + la           +a +   + vi vG+  sn + ata+ a++l L ++ +    k + d d+       l+ l      + sa    ++  ++  + + l   G    v+P GG n+ G lG v  +le+aeq+      +   +v  +Gs+ t++Gl +G+  
  MMETSP1137-20121227|1500_1 128 FYVKREDLSSPIYGGNKVRTLQHQLAviesrlsratsDAETARLQNVIVVGTGGSNQVVATAVHARQLHLTPLHVAWVDKDLPDLDNS------LNMLSALSFPLLSASTWGRPLPMVAHIIKTLA-TGS-GIVLPLGGNNPAGVLGQVGGMLELAEQISAGEVPDPRRVVLPVGSACTVSGLIIGVAL 308
                 69*******************9876533322222222333344457**************************9999877776663333......34555566668999999998766666655554.343.47*************************77664446789*****************764 PP

>> TIGR01274  ACC_deam: 1-aminocyclopropane-1-carboxylate deaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   2.4e-05      0.05      33      61 ..     128     155 ..     115     218 .. 0.68
   2 ?   -1.1   0.0     0.087   1.8e+02     163     214 ..     259     311 ..     247     327 .. 0.72

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 2.4e-05
   TIGR01274  33 lyakredlnsGlafGGnktrkleylipda 61 
                  y kredl s   +GGnk+r l++ ++ +
  MMETSP1137-20121227|1500_1 128 FYVKREDLSSP-IYGGNKVRTLQHQLAVI 155
                 79******887.5********99876543 PP

  == domain 2    score: -1.1 bits;  conditional E-value: 0.087
   TIGR01274 163 dhplGGlGfvgfaeevreqeaelGvkfdkvvvcsv.tGstqaGlvaGfaadgr 214
                 + p G lG vg   e+ eq +   v   + vv  v +  t +Gl++G+a+  r
  MMETSP1137-20121227|1500_1 259 NNPAGVLGQVGGMLELAEQISAGEVPDPRRVVLPVgSACTVSGLIIGVALCRR 311
                 457788888888888888876655655444454441567999*****999887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (533 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       150  (0.0365675); expected 82.0 (0.02)
Passed bias filter:                      121  (0.0294978); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.14s 00:00:00.54 Elapsed: 00:00:00.47
# Mc/sec: 1496.81
//
Query:       MMETSP1137-20121227|1501_1  [L=778]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (778 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       113  (0.0275475); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.49u 0.18s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 2567.19
//
Query:       MMETSP1137-20121227|1502_1  [L=174]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (174 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        43  (0.0104827); expected 82.0 (0.02)
Passed bias filter:                       39  (0.00950756); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.16s 00:00:00.33 Elapsed: 00:00:00.28
# Mc/sec: 820.22
//
Query:       MMETSP1137-20121227|1503_1  [L=381]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (381 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       209  (0.0509508); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.19s 00:00:00.49 Elapsed: 00:00:00.38
# Mc/sec: 1323.36
//
Query:       MMETSP1137-20121227|1505_1  [L=206]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (206 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       111  (0.02706); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.15s 00:00:00.35 Elapsed: 00:00:00.45
# Mc/sec: 604.22
//
Query:       MMETSP1137-20121227|1506_1  [L=164]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (164 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        53  (0.0129205); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.15s 00:00:00.31 Elapsed: 00:00:00.66
# Mc/sec: 327.97
//
Query:       MMETSP1137-20121227|1507_1  [L=687]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (687 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       188  (0.0458313); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.12s 00:00:00.56 Elapsed: 00:00:00.56
# Mc/sec: 1619.22
//
Query:       MMETSP1137-20121227|1508_1  [L=790]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (790 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        92  (0.0224281); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.50u 0.15s 00:00:00.65 Elapsed: 00:00:00.63
# Mc/sec: 1655.10
//
Query:       MMETSP1137-20121227|1509_1  [L=324]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (324 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        94  (0.0229157); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.12s 00:00:00.39 Elapsed: 00:00:00.61
# Mc/sec: 701.06
//
Query:       MMETSP1137-20121227|1510_1  [L=402]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (402 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       100  (0.0243784); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.15s 00:00:00.44 Elapsed: 00:00:00.42
# Mc/sec: 1263.32
//
Query:       MMETSP1137-20121227|1511_1  [L=472]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (472 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        98  (0.0238908); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.16s 00:00:00.50 Elapsed: 00:00:00.60
# Mc/sec: 1038.31
//
Query:       MMETSP1137-20121227|1512_1  [L=552]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (552 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       115  (0.0280351); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.18s 00:00:00.55 Elapsed: 00:00:00.49
# Mc/sec: 1486.90
//
Query:       MMETSP1137-20121227|1513_1  [L=612]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (612 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        83  (0.020234); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.14s 00:00:00.51 Elapsed: 00:00:00.52
# Mc/sec: 1553.41
//
Query:       MMETSP1137-20121227|1514_1  [L=209]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.6e-52  174.5   0.9    4.2e-52  174.3   0.6    1.0  1  TIGR01383 not_thiJ: DJ-1 family protein
    6.8e-20   69.1   0.0    8.2e-20   68.9   0.0    1.0  1  TIGR01382 PfpI: intracellular protease, PfpI family


Domain annotation for each model (and alignments):
>> TIGR01383  not_thiJ: DJ-1 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  174.3   0.6   2.1e-55   4.2e-52       1     179 [.      27     202 ..      27     203 .. 0.94

  Alignments for each domain:
  == domain 1    score: 174.3 bits;  conditional E-value: 2.1e-55
   TIGR01383   1 kvlillaeGaEevEavivvdvLrRagikvtvavvsledklavkgsrgvklladksledveeeefDvivLpGGlpGaenlkdsklleellkkqeskgklvAAICaaPivllaaevllgkkkatcypslkekllneeysvekavvvdgkliTsrGpgtaieFalelvelLaGkevaeevak 179
                 +vl+++ +G+Ee+E+v + d+L+Rag++vt+a+v   ++l++k +rg  ++a++s++++  ee+D+i+ pGG+pGa++l+ s++l +llkkq ++ k  AA+Ca+P+++laa++ll  ++atc+p    k +   +  +++vvvdg +iTs+Gpgt+++Fal++ve L Gke+a+e+a+
  MMETSP1137-20121227|1514_1  27 RVLVPVGDGSEEIETVCITDTLVRAGVEVTIASVM-PGQLTLKMARGLIVTANRSIDECVGEEWDAIACPGGMPGAKHLSASTALADLLKKQVAASKWTAAVCASPAIVLAAHGLLP-TNATCFPAPALKEKVPGW-MDEKVVVDGCIITSQGPGTSLQFALKIVEVLLGKEKAQEIAS 202
                 599***************************99998.6779****************************************************************************9.5*****965544444456.6778***********************************986 PP

>> TIGR01382  PfpI: intracellular protease, PfpI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.9   0.0     4e-23   8.2e-20       2     168 ..      28     191 ..      27     192 .. 0.92

  Alignments for each domain:
  == domain 1    score: 68.9 bits;  conditional E-value: 4e-23
   TIGR01382   2 llvlaedefedeEllePlkalkeaGheVtvvsgkekgeivkekkgakvtvdatlddvdaeeydalvipGGra.peylrldekvielvrefaekgKpvaaIChgpqlLisAdvlrGkkltaypaiaedvknAGaeyvdirevvvvdanlvtakvpadlpafvseilkll 168
                 +lv ++d+ e++E++   ++l +aG eVt++s    + + k  +g +vt ++++d+   ee+da++ pGG   +++l   + +  l ++ + + K  aa+C +p +  +A  l    +t++pa a  +k+    ++d   +vvvd+ ++t++ p+   +f  +i+++l
  MMETSP1137-20121227|1514_1  28 VLVPVGDGSEEIETVCITDTLVRAGVEVTIASVMPGQLTLKMARGLIVTANRSIDECVGEEWDAIACPGGMPgAKHLSASTALADLLKKQVAASKWTAAVCASPAIVLAAHGLLPTNATCFPAPA--LKEKVPGWMDE--KVVVDGCIITSQGPGTSLQFALKIVEVL 191
                 678899**************************666666777889***************************98**************************************999********954..5555567***5..7***********************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (209 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       139  (0.0338859); expected 82.0 (0.02)
Passed bias filter:                      104  (0.0253535); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.22u 0.18s 00:00:00.40 Elapsed: 00:00:00.35
# Mc/sec: 788.16
//
Query:       MMETSP1137-20121227|1515_1  [L=46]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.28    9.3   5.4       0.32    9.1   3.7    1.3  1  TIGR03816 tadE_like_DECH: helicase/secretion neighborhood TadE-like protein


Domain annotation for each model (and alignments):
>> TIGR03816  tadE_like_DECH: helicase/secretion neighborhood TadE-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   3.7   7.8e-05      0.32      34      58 ..       2      26 ..       1      42 [. 0.75

  Alignments for each domain:
  == domain 1    score: 9.1 bits;  conditional E-value: 7.8e-05
   TIGR03816 34 hraasaADlaALaAAdalaageeaa 58
                ++a+  ADlaALa A+++ ++++ a
  MMETSP1137-20121227|1515_1  2 RQAKHQADLAALADAQRALNAANRA 26
                6899**********99877775554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (46 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       161  (0.0392491); expected 82.0 (0.02)
Passed bias filter:                      146  (0.0355924); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.27
# Mc/sec: 224.87
//
Query:       MMETSP1137-20121227|1516_1  [L=150]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (150 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        33  (0.00804486); expected 82.0 (0.02)
Passed bias filter:                       23  (0.00560702); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.12s 00:00:00.28 Elapsed: 00:00:00.28
# Mc/sec: 707.08
//
Query:       MMETSP1137-20121227|1517_1  [L=268]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.7e-72  242.5   0.4      2e-72  242.3   0.3    1.0  1  TIGR00065 ftsZ: cell division protein FtsZ


Domain annotation for each model (and alignments):
>> TIGR00065  ftsZ: cell division protein FtsZ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  242.3   0.3   4.8e-76     2e-72     118     335 ..       2     216 ..       1     234 [. 0.95

  Alignments for each domain:
  == domain 1    score: 242.3 bits;  conditional E-value: 4.8e-76
   TIGR00065 118 GaaPvvakiakelgiLtvavvtkPfkfEgkkrrkkAeeGleeLkkavDslivipNdkllevvpk.lplkeafkvadevlvkavkgiselItkpglinvDFaDvravmskkGvaligigeakgedkakraeeavrkaisspllekakisgakgvlvnitggadltleeaeeiveiikseldqeanviwgasideeledelrvtvvatgvksqkevesekv 335
                 GaaPvva++ak +g+Ltv++vtkPf fEg++r+++A e ++eL+++vD liv+ Ndklle+vp+ +pl+eaf++ade+l++++ gis+++ kpglinvDFaDvr+vm ++G al+gig   g+    ra +a+ +a+sspll+   i+ akgv++ itg +d++l+e++e++ +i+s ++ +an+i+g+s+de + de+ vtvvat ++ ++  +++++
  MMETSP1137-20121227|1517_1   2 GAAPVVAELAKAAGCLTVGIVTKPFVFEGRRRMSQALEAIDELQNHVDILIVVSNDKLLEIVPEgVPLQEAFSLADEILRQGITGISDIVVKPGLINVDFADVRSVMTNAGPALMGIGRGFGKT---RARDAALAAVSSPLLDFP-IEKAKGVVFTITGTSDMSLQEVNEVATVISSIVSSDANIIFGTSVDETFGDEISVTVVATSFEVPDDGSAASS 216
                 9*************************************************************************************************************************99...788*************99.**************************************************************99887766654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (268 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       208  (0.050707); expected 82.0 (0.02)
Passed bias filter:                      165  (0.0402243); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.26u 0.16s 00:00:00.42 Elapsed: 00:00:00.40
# Mc/sec: 884.33
//
Query:       MMETSP1137-20121227|1518_1  [L=183]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      3e-11   41.3   0.0    4.9e-11   40.5   0.0    1.3  1  TIGR02180 GRX_euk: glutaredoxin
    1.2e-10   39.3   0.0      3e-10   38.1   0.0    1.6  1  TIGR02181 GRX_bact: glutaredoxin 3
    3.4e-10   37.6   1.2    4.9e-10   37.1   0.1    1.8  2  TIGR02190 GlrX-dom: glutaredoxin-family domain
    5.3e-06   24.2   0.0    9.2e-06   23.4   0.0    1.5  1  TIGR02189 GlrX-like_plant: glutaredoxin-like family
     0.0092   14.3   0.0      0.037   12.4   0.0    1.9  1  TIGR02196 GlrX_YruB: glutaredoxin-like protein, YruB-family
  ------ inclusion threshold ------
      0.051   10.6   0.4      0.068   10.2   0.3    1.1  1  TIGR02583 DevR_archaea: CRISPR-associated protein Cas7/Csa2, subtype I-A/APERN


Domain annotation for each model (and alignments):
>> TIGR02180  GRX_euk: glutaredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.5   0.0   7.2e-14   4.9e-11       2      68 ..      85     154 ..      84     160 .. 0.90

  Alignments for each domain:
  == domain 1    score: 40.5 bits;  conditional E-value: 7.2e-14
   TIGR02180   2 vvfsKsyCpYckkakelLkklkvkkalevveldkl.....engselqdyLkeltgqrtVPrifingkfiGGs 68 
                 vv+  ++ p+c++ak lL+k+  k  + +vel         +gs++++ L e+tgq++ P++fi+g+++GG 
  MMETSP1137-20121227|1518_1  85 VVYTYTFSPFCTEAKGLLEKTGAK--VTTVELGAEwfllgAKGSAIRAKLGEMTGQTSFPHVFIGGEHVGGL 154
                 8999***************99777..99999987645555899***************************94 PP

>> TIGR02181  GRX_bact: glutaredoxin 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.1   0.0   4.3e-13     3e-10       2      64 ..      85     154 ..      84     157 .. 0.84

  Alignments for each domain:
  == domain 1    score: 38.1 bits;  conditional E-value: 4.3e-13
   TIGR02181   2 viYtkksCpycsrAkalLeekgvefeeievdkdk........eareemierskgrrtvPQifigdvhvGGc 64 
                 v+Yt ++ p+c++Ak lLe+ g++++ +e+ ++         + r+++ e + g++++P +fig +hvGG 
  MMETSP1137-20121227|1518_1  85 VVYTYTFSPFCTEAKGLLEKTGAKVTTVELGAEWfllgakgsAIRAKLGEMT-GQTSFPHVFIGGEHVGGL 154
                 79************************99997764444433446788888888.7****************5 PP

>> TIGR02190  GlrX-dom: glutaredoxin-family domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0       2.6   1.8e+03      50      59 ..      58      67 ..      51      69 .. 0.67
   2 !   37.1   0.1   7.1e-13   4.9e-10       9      70 ..      83     153 ..      76     156 .. 0.84

  Alignments for each domain:
  == domain 1    score: -3.2 bits;  conditional E-value: 2.6
   TIGR02190 50 ravtGattvP 59
                 avtG   +P
  MMETSP1137-20121227|1518_1 58 AAVTGIAGAP 67
                5777777766 PP

  == domain 2    score: 37.1 bits;  conditional E-value: 7.1e-13
   TIGR02190   9 svsvftkpGCPfCakakavLkekGldfeeivLgkd.....irtrslra....vtGattvPqvfinGkliGg 70 
                   +v+t    PfC +ak +L++ G +   + Lg +     +++ ++ra    +tG+t+ P vfi+G+++Gg
  MMETSP1137-20121227|1518_1  83 PCVVYTYTFSPFCTEAKGLLEKTGAKVTTVELGAEwfllgAKGSAIRAklgeMTGQTSFPHVFIGGEHVGG 153
                 568999999***********************9854444478888887655589999*************9 PP

>> TIGR02189  GlrX-like_plant: glutaredoxin-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.4   0.0   1.3e-08   9.2e-06       7      75 ..      81     154 ..      75     183 .] 0.88

  Alignments for each domain:
  == domain 1    score: 23.4 bits;  conditional E-value: 1.3e-08
   TIGR02189   7 ekavvifskssCClshvvkrLllelGvnPavveldke.....aeakeiekallelgskeavPvvfvGGklvGgl 75 
                  ++ v+++ +   ++  +k Ll + G++ + vel+ e     a+++ i + l e++++++ P vf+GG+ vGgl
  MMETSP1137-20121227|1518_1  81 RNPCVVYTYTFSPFCTEAKGLLEKTGAKVTTVELGAEwfllgAKGSAIRAKLGEMTGQTSFPHVFIGGEHVGGL 154
                 57899999999999********************9874444468888999999999****************97 PP

>> TIGR02196  GlrX_YruB: glutaredoxin-like protein, YruB-family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.4   0.0   5.4e-05     0.037       3      62 ..      85     152 ..      83     156 .. 0.83

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 5.4e-05
   TIGR02196   3 kvYttpwCppCkkakeyLkskgiafeeidv........ekdsaaaeellkklgqrsvPvivigekivv 62 
                  vYt +  p C +ak  L++ g +  +++         +k+sa +++l + +gq s P + ig++ v 
  MMETSP1137-20121227|1518_1  85 VVYTYTFSPFCTEAKGLLEKTGAKVTTVELgaewfllgAKGSAIRAKLGEMTGQTSFPHVFIGGEHVG 152
                 69*********************999999844444444577899999999999999999999966554 PP

>> TIGR02583  DevR_archaea: CRISPR-associated protein Cas7/Csa2, subtype I-A/APERN
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.3   9.9e-05     0.068     218     257 ..       5      44 ..       2      60 .. 0.88

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 9.9e-05
   TIGR02583 218 rkrRaeaalkALlklLsgafgakraRflPvvkveelvvav 257
                 r++R+ aa +AL+ + +ga +ak+a  +P+++  + vv  
  MMETSP1137-20121227|1518_1   5 RQHRTMAATHALILFVAGASAAKLAPPNPLLRAASTVVTP 44 
                 789*****************************99999975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (183 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.20u 0.14s 00:00:00.34 Elapsed: 00:00:00.42
# Mc/sec: 575.10
//
Query:       MMETSP1137-20121227|1519_1  [L=114]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (114 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        76  (0.0185275); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.10s 00:00:00.24 Elapsed: 00:00:00.63
# Mc/sec: 238.84
//
Query:       MMETSP1137-20121227|1520_1  [L=606]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (606 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        79  (0.0192589); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.15s 00:00:00.53 Elapsed: 00:00:00.82
# Mc/sec: 975.43
//
Query:       MMETSP1137-20121227|1521_1  [L=179]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (179 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        95  (0.0231594); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.17s 00:00:00.36 Elapsed: 00:00:00.28
# Mc/sec: 843.79
//
Query:       MMETSP1137-20121227|1522_1  [L=233]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (233 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        65  (0.0158459); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.15s 00:00:00.34 Elapsed: 00:00:00.36
# Mc/sec: 854.26
//
Query:       MMETSP1137-20121227|1523_1  [L=537]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (537 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       231  (0.056314); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.16s 00:00:00.54 Elapsed: 00:00:00.62
# Mc/sec: 1143.20
//
Query:       MMETSP1137-20121227|1524_1  [L=280]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (280 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        53  (0.0129205); expected 82.0 (0.02)
Passed bias filter:                       34  (0.00828864); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.14s 00:00:00.35 Elapsed: 00:00:00.41
# Mc/sec: 901.39
//
Query:       MMETSP1137-20121227|1525_1  [L=273]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (273 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        47  (0.0114578); expected 82.0 (0.02)
Passed bias filter:                       34  (0.00828864); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.15s 00:00:00.38 Elapsed: 00:00:00.73
# Mc/sec: 493.60
//
Query:       MMETSP1137-20121227|1526_1  [L=117]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (117 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        32  (0.00780107); expected 82.0 (0.02)
Passed bias filter:                       30  (0.00731351); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.15s 00:00:00.31 Elapsed: 00:00:00.38
# Mc/sec: 406.39
//
Query:       MMETSP1137-20121227|1527_1  [L=360]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.5e-19   66.8   0.0    1.9e-18   64.4   0.0    1.8  1  TIGR01293 Kv_beta: voltage-dependent potassium channel beta subunit


Domain annotation for each model (and alignments):
>> TIGR01293  Kv_beta: voltage-dependent potassium channel beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.4   0.0   4.5e-22   1.9e-18      29     300 ..      64     355 ..      52     360 .] 0.80

  Alignments for each domain:
  == domain 1    score: 64.4 bits;  conditional E-value: 4.5e-22
   TIGR01293  29 sdeqaedllklayesginlfdiaevyaagkaetelgkilkkkgwrrssyvittkifwggkaeeerg..lsrkhiieglkaslerlqleyvdivlanradpsspmeevvramtyvinqglalywgtsrwsaveimeaysvarqfnlippiveqaeyhlfqrekv.....elqlp...elyhki...gvgavtwsplalalvdsky...ddk.lpka..skatlkgyqwlkekvrseegrr.qqarlkdlaalaeklgctlaqlaiawslrsegvssvllgassaeqlmeslgs 300
                 s+e a  ll   +  g n +d a +y  g +e+ +g  l+++   r  +v+ +k    g+ +          h+   +  sl rl ++y+d  l++r dps p+ ++vr m  +   g+   wg s w +  +  a   a +  l pp+++  ++ l    +       +  p   e +       v ++ w  la +++ +k+   d++  p+     +   + +w + + r+   ++ + +r    + +a++ g +l+++a+ + l + + s  l+g++s   + ++  +
  MMETSP1137-20121227|1527_1  64 SEEDAFLLLDGVWAAGCNALDCAAIYGGGVCEQRVGAWLRSRSIPRDEIVLISKGGCEGQDKLWCAtiADHTHMRSEISNSLRRLGVDYIDCYLLHRDDPSLPVGQIVRFMDEMCSSGMIKTWGVSNWQKSRLQAALEHAERHGLRPPVADSPQNSLAEPSRAvwpntAFMSPskrEEWLEAtsgNVALLGWECLAKGFMCGKWtraDGEfTPEDdvLLSEASAPRWRELQLRIAYCNKeNFDRRDRALVIAREKGVALPEVALGYVLSQHPRSFALVGTTSLSHFEQNARA 355
                 566777788888999***************************************99999887654411457799999*************************************************************************99888887654431111133334222333222121477889*****9999887622144456654212334457799999999988755156777778899******************************99988887665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (360 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        55  (0.0134081); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.28u 0.18s 00:00:00.46 Elapsed: 00:00:00.68
# Mc/sec: 698.77
//
Query:       MMETSP1137-20121227|1528_1  [L=739]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00026   18.1   0.0    0.00026   18.1   0.0    1.7  2  TIGR00116 tsf: translation elongation factor Ts
  ------ inclusion threshold ------
        5.5    2.3  26.7        7.3    1.9  18.5    1.1  1  TIGR02168 SMC_prok_B: chromosome segregation protein SMC


Domain annotation for each model (and alignments):
>> TIGR00116  tsf: translation elongation factor Ts
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.0   1.3e-07   0.00026       6      42 ..      70     106 ..      66     113 .. 0.91
   2 ?   -4.4   1.6      0.92   1.9e+03      36      78 ..     347     389 ..     336     421 .. 0.60

  Alignments for each domain:
  == domain 1    score: 18.1 bits;  conditional E-value: 1.3e-07
   TIGR00116   6 aqlvkeLRektdAgmmdCkkALveangDlekAidllR 42 
                  + vk ++e+t+ ++  Ck ALv ++ D+e A+ +l 
  MMETSP1137-20121227|1528_1  70 LHAVKAVKERTGLSLQRCKEALVATDTDIEAAVRWLA 106
                 5689******************************995 PP

  == domain 2    score: -4.4 bits;  conditional E-value: 0.92
   TIGR00116  36 kAidllRekGiakaakkadrvAaeGvvllkvdndkavlveins 78 
                  A d  R+  +a  + ka + A e  ++   ++ +a  ve++s
  MMETSP1137-20121227|1528_1 347 AAEDHERQAEMAAEEAKASHRALEAALAEAAQKLEACAVEVES 389
                 5555556666666666666666666666666666666666655 PP

>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9  18.5    0.0036       7.3     342     435 ..     327     419 ..     276     447 .. 0.29

  Alignments for each domain:
  == domain 1    score: 1.9 bits;  conditional E-value: 0.0036
   TIGR02168 342 leeeleelkeelesleaeleeaeaeleelesrleeleeeleelrsevaeleeqlaslnaelerleaeleqleerrerlkqeieelekkleeaea 435
                 l+ + ++  + le+++ + ++ae+  +++e ++ee+++ +++l++++ae+ ++l++ + e+e+++a  e+ +++r++++++++++++++e a++
  MMETSP1137-20121227|1528_1 327 LARQRASDXAALERAKLQCAAAEDHERQAEMAAEEAKASHRALEAALAEAAQKLEACAVEVESARAAEEREAQKRQQQESQRQQEQQQAE-AQQ 419
                 111111111111111111111122222222222222222222222222222222222222222222211111111111111111111111.111 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (739 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       402  (0.098001); expected 82.0 (0.02)
Passed bias filter:                      139  (0.0338859); expected 82.0 (0.02)
Passed Vit filter:                        36  (0.00877621); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.65u 0.15s 00:00:00.80 Elapsed: 00:00:00.78
# Mc/sec: 1250.51
//
Query:       MMETSP1137-20121227|1529_1  [L=334]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (334 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        79  (0.0192589); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.16s 00:00:00.41 Elapsed: 00:00:00.38
# Mc/sec: 1160.11
//
Query:       MMETSP1137-20121227|1530_1  [L=643]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0037   14.7   0.0     0.0098   13.3   0.0    1.6  2  TIGR02521 type_IV_pilW: type IV pilus biogenesis/stability protein PilW


Domain annotation for each model (and alignments):
>> TIGR02521  type_IV_pilW: type IV pilus biogenesis/stability protein PilW
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.0      0.35   1.4e+03     182     200 ..      62      80 ..      55      92 .. 0.58
   2 !   13.3   0.0   2.4e-06    0.0098     149     197 ..     155     203 ..     152     209 .. 0.93

  Alignments for each domain:
  == domain 1    score: -3.6 bits;  conditional E-value: 0.35
   TIGR02521 182 kgqyaeAralleryqqtve 200
                 +g +aeA++ ++r  q+++
  MMETSP1137-20121227|1530_1  62 DGLLAEAEKRYKRILQVAN 80 
                 4555666666666666653 PP

  == domain 2    score: 13.3 bits;  conditional E-value: 2.4e-06
   TIGR02521 149 gdtekaekyltralkidpkrpesllelaelklkkgqyaeAralleryqq 197
                 g + ka+  +++a++  p++ ++ll+la l+ ++g +++A++l++r+++
  MMETSP1137-20121227|1530_1 155 GGATKARYLIKQAIDCWPGNTQALLNLALLERDEGSLIRAMELFQRVAE 203
                 77889****************************************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (643 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        76  (0.0185275); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.18s 00:00:00.59 Elapsed: 00:00:00.53
# Mc/sec: 1601.30
//
Query:       MMETSP1137-20121227|1531_1  [L=393]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (393 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       158  (0.0385178); expected 82.0 (0.02)
Passed bias filter:                      100  (0.0243784); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.15s 00:00:00.44 Elapsed: 00:00:00.44
# Mc/sec: 1178.90
//
Query:       MMETSP1137-20121227|1532_1  [L=1357]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.075    9.7   0.0       0.12    9.1   0.0    1.2  1  TIGR03449 mycothiol_MshA: UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase


Domain annotation for each model (and alignments):
>> TIGR03449  mycothiol_MshA: UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   0.0   2.9e-05      0.12      31      93 ..     353     417 ..     350     446 .. 0.76

  Alignments for each domain:
  == domain 1    score: 9.1 bits;  conditional E-value: 2.9e-05
   TIGR03449  31 akelarrgveveiftratssaqgevvevap.gvlvrnvvaGPyegldkedlptqlaaf.tagvlr 93 
                 + e+ ++g  +++  ra +++ +    v++  + v+   aG + + +k++  t+l+ f + ++l+
  MMETSP1137-20121227|1532_1 353 TAEVDENGFPLDVTERAKKAQLRYNFIVEEdCLCVITTSAGNFRNAEKTETRTKLCNFyVVKILN 417
                 56788999999*******9999888777651689***********************93345553 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1357 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        86  (0.0209654); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.75u 0.18s 00:00:00.93 Elapsed: 00:00:00.60
# Mc/sec: 2985.15
//
Query:       MMETSP1137-20121227|1533_1  [L=452]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (452 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       103  (0.0251097); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.12s 00:00:00.44 Elapsed: 00:00:00.43
# Mc/sec: 1387.42
//
Query:       MMETSP1137-20121227|1534_1  [L=260]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (260 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        72  (0.0175524); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.15s 00:00:00.36 Elapsed: 00:00:00.49
# Mc/sec: 700.35
//
Query:       MMETSP1137-20121227|1535_1  [L=250]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (250 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        71  (0.0173086); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.15s 00:00:00.36 Elapsed: 00:00:00.50
# Mc/sec: 659.95
//
Query:       MMETSP1137-20121227|1536_1  [L=103]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (103 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        59  (0.0143832); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.39
# Mc/sec: 348.59
//
Query:       MMETSP1137-20121227|1537_1  [L=227]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.3e-13   48.9   0.0    1.8e-13   48.4   0.0    1.1  1  TIGR00231 small_GTP: small GTP-binding protein domain
     0.0014   15.7   0.0       0.13    9.2   0.0    2.1  2  TIGR03597 GTPase_YqeH: ribosome biogenesis GTPase YqeH
     0.0034   14.3   0.0       0.76    6.5   0.0    2.0  2  TIGR03594 GTPase_EngA: ribosome-associated GTPase EngA
  ------ inclusion threshold ------
      0.014   12.8   0.0       0.04   11.3   0.0    1.6  2  TIGR00157 TIGR00157: ribosome small subunit-dependent GTPase A


Domain annotation for each model (and alignments):
>> TIGR00231  small_GTP: small GTP-binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.4   0.0   1.8e-16   1.8e-13       5     159 ..      25     181 ..      23     185 .. 0.94

  Alignments for each domain:
  == domain 1    score: 48.4 bits;  conditional E-value: 1.8e-16
   TIGR00231   5 kivivGhvdvGKstLlnsllknkisiteskp......gvtrdyvteqieedGktykvnllDTaGqedfdairrlyvreverslevvdivilvldveeglekqtkeiiheakkkgvpiilvvnKiDlkd.dlktkvkslfaklnaepiielsaetgknidklf 159
                  +++vG+++vGKs L n  l +  s+ ++ p       ++ + +t   e +G +y++ ++ ++G  ++ + +++y + +++++ v+d++ +  +++ ++  +  ++++ ++  ++p +l +nK D++  +++ +++  +a   +++ +e+sa   + + ++f
  MMETSP1137-20121227|1537_1  25 SLLVVGESSVGKSELVNCTLPDA-SKRATPPpkdpigDTGVQCRTHTYESRGARYQILMWEVPGAPRYLQSVPQYAAVAAGIMVVFDLSRR-ATFDRVK-LWLDIVERCCP--DMPKVLIGNKSDKQPsEVEAQEAVALASGHGCKXFETSASRNEQVSEAF 181
                 589***************99999.88888779999*989999999999*******************************************.9999999.***********..**************999999999999999**********9999988887 PP

>> TIGR03597  GTPase_YqeH: ribosome biogenesis GTPase YqeH
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.2   0.0   0.00013      0.13     155     176 ..      23      44 ..       2      52 .. 0.75
   2 !    4.7   0.0     0.003       3.1      57     111 ..      94     153 ..      83     175 .. 0.85

  Alignments for each domain:
  == domain 1    score: 9.2 bits;  conditional E-value: 0.00013
   TIGR03597 155 kkdvyvvGvtNVGKSsliNkll 176
                     +vvG + VGKS l+N  l
  MMETSP1137-20121227|1537_1  23 SFSLLVVGESSVGKSELVNCTL 44 
                 66789**************766 PP

  == domain 2    score: 4.7 bits;  conditional E-value: 0.003
   TIGR03597  57 llnslsekkalvvavvD.....ifdlegslikelkrfvkenkvllvvNKidllpksvkle 111
                  + ++    a ++ v+D      fd  + +++ ++r++ + + +l++NK d  p +v+ +
  MMETSP1137-20121227|1537_1  94 SVPQYAAVAAGIMVVFDlsrraTFDRVKLWLDIVERCCPDMPKVLIGNKSDKQPSEVEAQ 153
                 55555666677888888777777999999**********************999998766 PP

>> TIGR03594  GTPase_EngA: ribosome-associated GTPase EngA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.0   0.0    0.0011       1.1     176     196 ..      24      44 ..      13      51 .. 0.77
   2 !    6.5   0.0   0.00075      0.76     109     162 ..     134     190 ..      92     219 .. 0.70

  Alignments for each domain:
  == domain 1    score: 6.0 bits;  conditional E-value: 0.0011
   TIGR03594 176 ikiaiiGrpNvGKStLvNall 196
                 + + ++G   vGKS LvN+ l
  MMETSP1137-20121227|1537_1  24 FSLLVVGESSVGKSELVNCTL 44 
                 556788888888888888755 PP

  == domain 2    score: 6.5 bits;  conditional E-value: 0.00075
   TIGR03594 109 kpvilvvNKvdnkkeeaeaaefyslGlge...vlaiSaehgrgikdLldeileelpe 162
                  p +l+ NK+d++ +e ea+e+++l  g+    +  Sa+ ++++++ ++++++++ +
  MMETSP1137-20121227|1537_1 134 MPKVLIGNKSDKQPSEVEAQEAVALASGHgckXFETSASRNEQVSEAFSSLIARVVA 190
                 6779999**************999988753337889**9999998766666555433 PP

>> TIGR00157  TIGR00157: ribosome small subunit-dependent GTPase A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   3.9e-05      0.04     113     149 ..      13      50 ..       2      55 .. 0.76
   2 ?   -1.4   0.0      0.29     3e+02      72     120 ..     136     184 ..     108     191 .. 0.75

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 3.9e-05
   TIGR00157 113 leelkeklkkrisvf.aGqSGVGKSSLiNlldpevkqk 149
                 l+ l ++++ ++s++ +G+S VGKS L+N  +p ++++
  MMETSP1137-20121227|1537_1  13 LHGLADNYHFSFSLLvVGESSVGKSELVNCTLPDASKR 50 
                 55666777777776527*************99988765 PP

  == domain 2    score: -1.4 bits;  conditional E-value: 0.29
   TIGR00157  72 piivlnkkdlleeedaekeqleelknlgYkvllvsvkneegleelkekl 120
                 ++++ nk d+  +e  ++e +   +  g k + +s+  +e+++e +  l
  MMETSP1137-20121227|1537_1 136 KVLIGNKSDKQPSEVEAQEAVALASGHGCKXFETSASRNEQVSEAFSSL 184
                 5666677777776666677777777788888888887777777666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (227 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        96  (0.0234032); expected 82.0 (0.02)
Passed bias filter:                       96  (0.0234032); expected 82.0 (0.02)
Passed Vit filter:                        20  (0.00487567); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.23u 0.13s 00:00:00.36 Elapsed: 00:00:00.43
# Mc/sec: 696.78
//
Query:       MMETSP1137-20121227|1539_1  [L=513]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      4e-08   30.6   8.8      5e-05   20.4   1.4    2.3  2  TIGR00155 pqiA_fam: integral membrane protein, PqiA family


Domain annotation for each model (and alignments):
>> TIGR00155  pqiA_fam: integral membrane protein, PqiA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   1.4   1.2e-08     5e-05     281     362 ..      44     123 ..      41     137 .. 0.85
   2 !   13.9   0.5   1.1e-06    0.0046     106     173 ..     380     447 ..     360     450 .. 0.55

  Alignments for each domain:
  == domain 1    score: 20.4 bits;  conditional E-value: 1.2e-08
   TIGR00155 281 edtilsGvislvssgsyavaavvflasilvPilkvivilylllsvkfkgkrdlkrrilllelvefvGrWsmldlfviallms 362
                 e t++s v+ +++ ++y +a ++ l s   P +k++++l+  ++  + +  +   r ++l+ ++ +G+Ws++d +++ ++m 
  MMETSP1137-20121227|1539_1  44 EFTLVSSVVNMWKGEAYLLALLIALLSGAWPYAKLVLMLIAWWAP-GAV-LSPYYRERFLRALDALGKWSLIDFLMLMMMMV 123
                 569********************************9998766654.444.3455677899*************999988875 PP

  == domain 2    score: 13.9 bits;  conditional E-value: 1.1e-06
   TIGR00155 106 vllcvvvvPiilvllilllvlakelqvklrevll.vlerlkeWvmldiylvgvgvaivkvreyasievg 173
                 ++ +   +P++ + l+ l++l   ++ k r+ l+ v e l +W  +d+++  v  + + ++ +a+  vg
  MMETSP1137-20121227|1539_1 380 FYTLCFFMPLLWLSLLFLVWLL-PMSRKQRHRLVaVTEVLHAWSAIDVFMLMVIASRLELNRFAHFLVG 447
                 2223344565554444444443.3344444445446666666666666666666666666666665554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (513 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       156  (0.0380302); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.14s 00:00:00.48 Elapsed: 00:00:00.53
# Mc/sec: 1277.55
//
Query:       MMETSP1137-20121227|1540_1  [L=328]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (328 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       160  (0.0390054); expected 82.0 (0.02)
Passed bias filter:                      100  (0.0243784); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.15s 00:00:00.42 Elapsed: 00:00:00.35
# Mc/sec: 1236.93
//
Query:       MMETSP1137-20121227|1541_1  [L=246]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (246 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        82  (0.0199902); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.15s 00:00:00.37 Elapsed: 00:00:00.54
# Mc/sec: 601.28
//
Query:       MMETSP1137-20121227|1542_1  [L=87]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (87 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        48  (0.0117016); expected 82.0 (0.02)
Passed bias filter:                       42  (0.0102389); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.13s 00:00:00.26 Elapsed: 00:00:00.26
# Mc/sec: 441.66
//
Query:       MMETSP1137-20121227|1543_1  [L=227]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (227 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        85  (0.0207216); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.13s 00:00:00.34 Elapsed: 00:00:00.37
# Mc/sec: 809.77
//
Query:       MMETSP1137-20121227|1544_1  [L=377]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (377 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        79  (0.0192589); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.15s 00:00:00.43 Elapsed: 00:00:00.40
# Mc/sec: 1244.00
//
Query:       MMETSP1137-20121227|1545_1  [L=625]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (625 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        90  (0.0219405); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.15s 00:00:00.55 Elapsed: 00:00:00.56
# Mc/sec: 1447.25
//
Query:       MMETSP1137-20121227|1546_1  [L=288]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (288 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       129  (0.0314481); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.12s 00:00:00.36 Elapsed: 00:00:00.36
# Mc/sec: 1055.91
//
Query:       MMETSP1137-20121227|1547_1  [L=181]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (181 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        76  (0.0185275); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.15s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 853.22
//
Query:       MMETSP1137-20121227|1548_1  [L=240]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (240 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       122  (0.0297416); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.15s 00:00:00.35 Elapsed: 00:00:00.25
# Mc/sec: 1267.10
//
Query:       MMETSP1137-20121227|1549_1  [L=318]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0027   14.8   0.5     0.0042   14.2   0.0    1.5  2  TIGR00601 rad23: UV excision repair protein Rad23


Domain annotation for each model (and alignments):
>> TIGR00601  rad23: UV excision repair protein Rad23
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.3      0.15   6.1e+02     105     153 ..       8      56 ..       3      70 .. 0.57
   2 !   14.2   0.0     1e-06    0.0042      10      81 ..      94     167 ..      86     227 .. 0.84

  Alignments for each domain:
  == domain 1    score: -2.8 bits;  conditional E-value: 0.15
   TIGR00601 105 svaekksaaPasaveeessaeeeatatalesedtsaesegdsdretlvv 153
                 +va +++  P s+ + +++++e a +    ++ +s +s ++  ++ l+v
  MMETSP1137-20121227|1549_1   8 AVADEPARLPQSSHSFSTHSRELAETMKRLNPMPSFSSVSSLPKHRLMV 56 
                 4555555556666666666666666666666666655555555554444 PP

  == domain 2    score: 14.2 bits;  conditional E-value: 1e-06
   TIGR00601  10 qqkfkidlepdetvkelKekiese..kgkdayevaqqkLiyaGkiLsDdktvkeykikekdfvvvmvskkKavk 81 
                 ++ +++d+ p + +++lK ki+ +       y+ + ++L+++ k+L +  t+   +i ++  +v+   +  a +
  MMETSP1137-20121227|1549_1  94 GDVLNLDVRPTTSMTALKVKIARHllATAGYYPPSSMRLVFNSKVLPEVGTLLSLQIVDGSRIVMATVRDAAGQ 167
                 567899***************9872234457*******************************998877776666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (318 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.26u 0.15s 00:00:00.41 Elapsed: 00:00:00.33
# Mc/sec: 1271.89
//
Query:       MMETSP1137-20121227|1550_1  [L=309]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (309 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       132  (0.0321794); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.17s 00:00:00.42 Elapsed: 00:00:00.38
# Mc/sec: 1073.28
//
Query:       MMETSP1137-20121227|1551_1  [L=438]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.1e-39  134.3   0.0    1.6e-39  133.8   0.0    1.2  1  TIGR00737 nifR3_yhdG: putative TIM-barrel protein, nifR3 family
    1.4e-14   52.0   0.0    1.9e-14   51.6   0.0    1.1  1  TIGR00742 yjbN: tRNA dihydrouridine synthase A
    2.1e-06   25.3   0.0    2.9e-06   24.8   0.0    1.3  1  TIGR00736 nifR3_rel_arch: putative TIM-barrel protein
      9e-05   19.5   0.0    0.00018   18.5   0.0    1.3  1  TIGR01037 pyrD_sub1_fam: dihydroorotate dehydrogenase family protein
  ------ inclusion threshold ------
      0.026   11.7   0.0       0.05   10.8   0.0    1.4  1  TIGR03572 WbuZ: glycosyl amidation-associated protein WbuZ


Domain annotation for each model (and alignments):
>> TIGR00737  nifR3_yhdG: putative TIM-barrel protein, nifR3 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  133.8   0.0     2e-42   1.6e-39       8     233 ..     121     351 ..     115     377 .. 0.90

  Alignments for each domain:
  == domain 1    score: 133.8 bits;  conditional E-value: 2e-42
   TIGR00737   8 srvvlaPlagvtdlafRrlvkeyeaglvvsEmvssealveksektkklleiaedekpisvQlagsdpdvmaeaAkiaeelgadiiDlNmGCPvkkitkkgaGsallkepe..liekivkavveavevPVTvKiRiGwdeehinveeaariaedaGaqavalHgRTr.....aqly.eGeanwdiiarvkqavkiPVignGDitspedAkamLeetgadgvligRgalGkPwlfk 233
                  r v+aP+ g +dlafR l+++ +a+  ++Em+ s  +++++e  +  l++ e+ +p  vQl+ +  d +++a k++   + d iD+N+GCP ++   +g G+ ll +++  ++ ++v+++ +a+++PV  KiR+    e+  ++ +   +++aG + +a+HgR r       l+ + +a++d i++v++av+iPV++nG  ++p+d  a L+ t a+g++++ g l  P lf+
  MMETSP1137-20121227|1551_1 121 VRYVVAPMVGASDLAFRLLCRRHGATAAYTEMLFSSRIIKDPEYLRCKLQTCEEDRPLIVQLCATTVDDLVAAGKLV-CPKCDAIDINLGCPLPQAAEEGFGAWLLDREHwpMLRSMVRELKSATRIPVFCKIRLLSTVEE--TVALCETLQAAGCALLAIHGRRRpplgqHRLFrDTPADLDAIRQVVAAVSIPVLTNGNTQHPSDVAANLSFTKAAGIMCAEGLLRDPRLFE 351
                 57799*****************************************************************9998865.56789**********************9988644799*******************9655544..566788999************993332234562468************************************************9999885 PP

>> TIGR00742  yjbN: tRNA dihydrouridine synthase A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.6   0.0   2.4e-17   1.9e-14       2     164 ..     122     282 ..     121     287 .. 0.89

  Alignments for each domain:
  == domain 1    score: 51.6 bits;  conditional E-value: 2.4e-17
   TIGR00742   2 klsvaPmlditdrhfryllrllskkvllytemvtakaiihgdkkk..llkfseeekPvalqlggsdpedlakcaklaeefgydeinlnvGcPsdrvqngnfGaclmanad..lvadivkamkeaveiPvtvktriGideldsyeelvdfveivsdkGikefivhark 164
                 +  vaPm+  +d  fr l r+    +  ytem+ ++ ii+  ++    l+  ee++P+ +ql +   +dl  + kl+     d i++n+GcP  +  +  fGa l+ + +  ++  +v+++k+a++iPv  k r+    l + ee v + e+++ +G+  + +h r+
  MMETSP1137-20121227|1551_1 122 RYVVAPMVGASDLAFRLLCRRHG-ATAAYTEMLFSSRIIKDPEYLrcKLQTCEEDRPLIVQLCATTVDDLVAAGKLVCP-KCDAIDINLGCPLPQAAEEGFGAWLLDREHwpMLRSMVRELKSATRIPVFCKIRL----LSTVEETVALCETLQAAGCALLAIHGRR 282
                 5679****************987.5678***********99765411466678889*******************9976.679***********************987633799*****************887....7788999999***************996 PP

>> TIGR00736  nifR3_rel_arch: putative TIM-barrel protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.8   0.0   3.6e-09   2.9e-06      63     166 ..     171     277 ..     154     374 .. 0.88

  Alignments for each domain:
  == domain 1    score: 24.8 bits;  conditional E-value: 3.6e-09
   TIGR00736  63 kikerakvavnvrisaleeeldvelsvaesadiieinahCrqPeiteiGiGqellknke..lLkefvakvk.karkpvfvkirgnvikldevkvarklvdagvdaih 166
                    e + + v++  + +++      +v    d i+in  C  P+ +e G G +ll  ++  +L+ +v ++k  +r pvf kir+ ++  ++v    +l  ag+  + 
  MMETSP1137-20121227|1551_1 171 TCEEDRPLIVQLCATTVDDLVAAGKLVCPKCDAIDINLGCPLPQAAEEGFGAWLLDREHwpMLRSMVRELKsATRIPVFCKIRLLSTVEETVALCETLQAAGCALLA 277
                 556788889999999999999999*******************************7665448********977899********88888889999999888886543 PP

>> TIGR01037  pyrD_sub1_fam: dihydroorotate dehydrogenase family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.0   2.1e-07   0.00018      86     186 ..     171     276 ..     162     280 .. 0.77

  Alignments for each domain:
  == domain 1    score: 18.5 bits;  conditional E-value: 2.1e-07
   TIGR01037  86 reevdtkliasvyGeseeefaevaeklekadkyvdaleLnvsCPhvkgaGieiGq...dpe...lsaevvkavkekvdkPvlak..LsPnvtdivelakaveeaGaDgl 186
                 + e d++li+++  +++++ + + + +    +  da+++n+ CP  ++a   +G    d e   ++ ++v ++k+++ +Pv+ k  L   v++ v l ++++ aG+  l
  MMETSP1137-20121227|1551_1 171 TCEEDRPLIVQLCATTVDDLVAAGKLVC---PKCDAIDINLGCPLPQAAEEGFGAwllDREhwpMLRSMVRELKSATRIPVFCKirLLSTVEETVALCETLQAAGCALL 276
                 4455677*************99888777...559*********9877766666642223332238899**************984455799*******99999997655 PP

>> TIGR03572  WbuZ: glycosyl amidation-associated protein WbuZ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   6.1e-05      0.05     185     228 ..     298     341 ..     293     344 .. 0.92

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 6.1e-05
   TIGR03572 185 dlelvktvskavkiPvialGGagslddlvevvleagasavaaas 228
                 dl+ +++v +av+iPv+ +G   + +d+++ +  ++a+++ +a+
  MMETSP1137-20121227|1551_1 298 DLDAIRQVVAAVSIPVLTNGNTQHPSDVAANLSFTKAAGIMCAE 341
                 99****************************99999999998875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (438 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        93  (0.0226719); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.34u 0.17s 00:00:00.51 Elapsed: 00:00:00.47
# Mc/sec: 1230.03
//
Query:       MMETSP1137-20121227|1552_1  [L=95]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (95 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        45  (0.0109703); expected 82.0 (0.02)
Passed bias filter:                       42  (0.0102389); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.15s 00:00:00.30 Elapsed: 00:00:00.52
# Mc/sec: 241.13
//
Query:       MMETSP1137-20121227|1553_1  [L=156]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (156 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        62  (0.0151146); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.17s 00:00:00.34 Elapsed: 00:00:00.25
# Mc/sec: 823.61
//
Query:       MMETSP1137-20121227|1554_1  [L=565]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   2.6e-187  621.2   0.0   3.6e-187  620.7   0.0    1.1  1  TIGR00499 lysS_bact: lysine--tRNA ligase
    1.2e-65  219.7   0.0    1.7e-65  219.3   0.0    1.2  1  TIGR00462 genX: EF-P lysine aminoacylase GenX
      2e-42  143.1   0.0    6.2e-30  101.9   0.0    2.1  2  TIGR00459 aspS_bact: aspartate--tRNA ligase
    5.5e-41  138.7   0.0    1.2e-40  137.6   0.0    1.4  1  TIGR00458 aspS_arch: aspartate--tRNA ligase
    4.4e-19   66.4   0.0    7.3e-19   65.7   0.0    1.3  1  TIGR00457 asnS: asparagine--tRNA ligase
    2.9e-09   34.4   3.1    1.4e-06   25.6   0.0    2.7  3  TIGR00468 pheS: phenylalanine--tRNA ligase, alpha subunit
    5.5e-05   20.4   0.3    0.00076   16.7   0.1    2.5  2  TIGR02367 PylS_Cterm: pyrrolysine--tRNA ligase, C-terminal region
     0.0049   13.7   0.1       0.59    6.9   0.0    2.8  3  TIGR00442 hisS: histidine--tRNA ligase
  ------ inclusion threshold ------
        1.3    6.0  21.4        2.1    5.3  14.8    1.3  1  TIGR02794 tolA_full: protein TolA


Domain annotation for each model (and alignments):
>> TIGR00499  lysS_bact: lysine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  620.7   0.0  7.9e-190  3.6e-187       3     494 ..      50     560 ..      48     561 .. 0.96

  Alignments for each domain:
  == domain 1    score: 620.7 bits;  conditional E-value: 7.9e-190
   TIGR00499   3 ndelqqrlekleelreegeepylnklertkeakelqeeyaklkneeleekelevsiaGRikakRsmgk.atFitlqdesgklqlyvnkdklsedveeleekl..........ldlGDiigvkGklkktktgelsvkveelklltkalrplPekfhGlkdqEtryrkRylDlivnkesrqtflkRskiikaiRkfldergflEvEtPilqsisgGAsAkPFithhnaldvdlylRiApElyLKrLivgGlekvyEigrvFRnEGvdttHnpEFttiElYqayadyedllelteellktlvkellgtlki.........kykeeeldlkkpvkkitmleaikkid.ketgislddlkdsetakalakklaievaekslslgkilnklfeefvEetliqPtfiteyPaeisPLAkrddenpelteRFElFikgkEianaysElndpldqrerfeeqvaekeagddeasllDedfvealeyGlpptgGlGiGiDRlvmlltdsksirdvllFpalre 494
                 ++++++rl+ ++e ++ g +py++k++ +++  +  ++ya+ +n +   + ++vs+aGRi ++Rs+gk ++F++l++++ k+q++ +  ++ e ++  ee+           l++GD++gv Gk+ ktk gels++ ++++llt +l+++P+  +Gl d+Etryr+RylDli+n+++r+ f++R+k+++ iR+fld++gflEvEtP+++ i+gGA+AkPFit hn+l+ +ly+R+ApElyLK L+vgG+++vyEigr FRnEG+d tHnpEFtt+E+Y+ayady+dl++ tee+l+++vk++ gt+ki          +ke e+d+++p+++i+m+  ++++  ++ +  l++ + + +++al kk+++e  +  l+++++l+kl++ef+E+++++Ptfi ++P+++sPLAk ++++p+lteRFElF + +E++nay+Elndp++qr+rfe q++ k+agddea+++Dedf++aleyGlppt+G+G+GiDRl+mlltd++si++vllFpa+++
  MMETSP1137-20121227|1554_1  50 SKYFENRLSWVDERKAAGVNPYPHKFHVSMQLPQYVSQYASIENGDVL-SGECVSLAGRIASRRSGGKgLVFFDLRGDGHKVQVFADAREFGEITALAEEERlpaflklmgtLKRGDVVGVVGKPGKTKRGELSIFPSKMELLTPCLHMMPKATYGLVDKETRYRQRYLDLIMNSTTREIFVTRTKVVNFIRRFLDMQGFLEVETPMMNMIPGGATAKPFITLHNELNRNLYMRVAPELYLKMLVVGGIDRVYEIGRLFRNEGMDLTHNPEFTTCEFYWAYADYDDLMKFTEEMLSSMVKTICGTTKIkfhpdgkgpDAKEVEIDFTPPFRRISMISGLEEVLeTKLPTPLESDEANAALQALCKKHNVEC-KPPLTTARLLDKLVGEFLESQCLNPTFICDHPKIMSPLAKDHRSKPGLTERFELFANYHEMCNAYTELNDPVEQRSRFESQAKDKDAGDDEAMFVDEDFCRALEYGLPPTAGWGMGIDRLCMLLTDQNSIKEVLLFPAMKP 560
                 67899999***********************************99555.599************9988689*******************98855544444346777888999************************************************************************************************************************************************************************************************************9******************99998876788888888888999999*******99.999****************************************************************************************************************************************96 PP

>> TIGR00462  genX: EF-P lysine aminoacylase GenX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  219.3   0.0   3.7e-68   1.7e-65       3     304 .]     231     555 ..     229     555 .. 0.94

  Alignments for each domain:
  == domain 1    score: 219.3 bits;  conditional E-value: 3.7e-68
   TIGR00462   3 krakllaaiRafFaergvlEvetpllseapvtdvhlealktelleeekekeklyLqtSPEyamKrLLaagsgkifqlakvfRneergrlHnpEFtmLEwYrvgadleelmeeveellqevle........................deeaeverlsyaeaferylgidplta.....sleelkeaaekageaaseeedredlldlllvekvepklgkerptflydyPasqaaLarikkddervAeRfElYikglElaNgfeELtdaaeqrkRfeednaerkalgleevpldekllaaleaglpecsGvAlGlDRLlmlalgaesieevlaf 304
                 +r k+++ iR+f++ +g+lEvetp+++  p+  +    ++ +    ++ +++ly++  PE+++K L++ g  +++++++ fRne +  +HnpEFt  E+Y + ad+++lm+ +ee+l+++++                        d + +++r+s+ + +e++l++++ t       +++l+++++k++++++   +++ lld+l+ e +e +    +ptf++d+P+ ++ La+ +++++++ eRfEl+++  E++N+++EL+d++eqr+Rfe++ + ++a   e + +de++ +ale glp+++G  +G+DRL ml+++++si+evl f
  MMETSP1137-20121227|1554_1 231 TRTKVVNFIRRFLDMQGFLEVETPMMNMIPGGATAKPFITLH----NELNRNLYMRVAPELYLKMLVVGGIDRVYEIGRLFRNEGMDLTHNPEFTTCEFYWAYADYDDLMKFTEEMLSSMVKticgttkikfhpdgkgpdakeveiDFTPPFRRISMISGLEEVLETKLPTPlesdeANAALQALCKKHNVECKPPLTTARLLDKLVGEFLESQCL--NPTFICDHPKIMSPLAKDHRSKPGLTERFELFANYHEMCNAYTELNDPVEQRSRFESQAKDKDAGDDEAMFVDEDFCRALEYGLPPTAGWGMGIDRLCMLLTDQNSIKEVLLF 555
                 6999************************99987765555555....6789**********************************************************************************************998899999999999999999998755455566778899999999999999999999****99999999865..79************************************************************************************************************986 PP

>> TIGR00459  aspS_bact: aspartate--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  101.9   0.0   1.4e-32   6.2e-30      15     263 ..      98     353 ..      87     361 .. 0.83
   2 !   39.1   0.0   1.4e-13   6.5e-11     470     556 ..     467     557 ..     445     560 .. 0.81

  Alignments for each domain:
  == domain 1    score: 101.9 bits;  conditional E-value: 1.4e-32
   TIGR00459  15 lgkkvtlaGWverrkdlGe.liFidlrDkegivqvvsdkk..kealelakelrnedvvqvkgkvslree.es..knrnldtgeievlaeeitvlnkskkkPleiekkeaeeevrlkyRYLdLR.rpkmqqrlklRskvtkavRnflddkgFleietPiLtkatPeGa..rdyLvPsRvkkgefyaLpqsPqlfkqLLmvsGvdkYyqiarcfRDeDlRaDRqPeftqiDlemsFlnqedvmelveklvsevfkevkki 263
                 +g+ v laG +  r+  G+ l+F dlr     vqv+ d     e  +la+e r    +++ g+++  +  +   k  + + ge+ +  +++++l    +   +++   + +e r + RYLdL  ++++ +++ +R+kv++++R+fld +gFle+etP++    P Ga  + ++      + + y +  +P l+ ++L+v+G+d+ y i r fR+e +     Peft  ++  ++++ +d+m+ +e+++s++ k++ ++
  MMETSP1137-20121227|1554_1  98 SGECVSLAGRIASRRSGGKgLVFFDLRGDGHKVQVFADARefGEITALAEEERLPAFLKLMGTLKRGDVvGVvgKPGKTKRGELSIFPSKMELLTPCLHMMPKATYGLVDKETRYRQRYLDLImNSTTREIFVTRTKVVNFIRRFLDMQGFLEVETPMMN-MIPGGAtaKPFITLHNELNRNLY-MRVAPELYLKMLVVGGIDRVYEIGRLFRNEGMDLTHNPEFTTCEFYWAYADYDDLMKFTEEMLSSMVKTICGT 353
                 5899**************99********999******99966666778888888999999**99444322221144567888999999******9665555555555556666********96266778999*************************986.67998622667766665566666.6789**************************************************************9998774 PP

  == domain 2    score: 39.1 bits;  conditional E-value: 1.4e-13
   TIGR00459 470 laeayDlvlnGvelGgGsiRihdkelqekvfeilgideeearekFgflle....afeyGaPphaGlalGlDRlvmllaetdsiRdviaFPk 556
                 l+e+++l  n  e+    + ++d+  q+  fe+   d++   ++  f+ e    a+eyG Pp aG ++G+DRl+mll++++si++v+ FP 
  MMETSP1137-20121227|1554_1 467 LTERFELFANYHEMCNAYTELNDPVEQRSRFESQAKDKDAGDDEAMFVDEdfcrALEYGLPPTAGWGMGIDRLCMLLTDQNSIKEVLLFPA 557
                 67888888888899999999999999999999888787777777666643333399**********************************5 PP

>> TIGR00458  aspS_arch: aspartate--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  137.6   0.0   2.6e-43   1.2e-40      11     421 ..      98     557 ..      89     560 .. 0.79

  Alignments for each domain:
  == domain 1    score: 137.6 bits;  conditional E-value: 2.6e-43
   TIGR00458  11 dgkevllrgwvheirdlGa.lifvllrdregliqilvkkkk.......vske....lfklikklkkesvvavkGkvkekekapqgleiipeklevlneakeplPldleekveaeldtrldarfldlr.rpkvqaifkirsevlesvreflaeegfievntPklvasateGGtelfeity...fereaflaqsPqlykqvllaaglervyeiaPifraeehntkrhlnevisidiemafedhkdvldileelvvrvfedvaeklkk..........................elevlevklevpeekle.rltydeaieilra..kGkeikdgedlstea..ekllGekmdgly....fitdfPteikPfytmPdednPeisksfdllyrdleissGaqr....ihdydllvekikakGlePe..sl..ksyleafkyGmPPhaGwGlGaerlvmvlldlknireavlfPr 421
                  g+ v l g++ + r  G+ l+f  lr     +q+ + ++         ++e    ++kl++ lk+ +vv v Gk  +     ++l i+p+k+e l+ + + +P      v+   +tr  +r+ldl  + +++ if  r++v++ +r fl  +gf+ev+tP +   +    ++ f it    ++r+ ++  +P ly ++l++ g++rvyei+ +fr e  +   h  e+++ +   a++d +d ++  ee++  +++ +   +k                                    ev e+kl+  l+ dea   l+a  k ++++    l+t+   +kl+Ge ++++     fi d+P  + P+    + ++P  ++ f+l+ +  e+          + +   +  + k k    +   +  ++++ a++yG+PP aGwG+G++rl m l+d++ i+e+ lfP 
  MMETSP1137-20121227|1554_1  98 SGECVSLAGRIASRRSGGKgLVFFDLRGDGHKVQVFADAREfgeitalAEEErlpaFLKLMGTLKRGDVVGVVGKPGKT--KRGELSIFPSKMELLTPCLHMMPKATYGLVD--KETRYRQRYLDLImNSTTREIFVTRTKVVNFIRRFLDMQGFLEVETPMMNMIPGGATAKPF-ITLhneLNRNLYMRVAPELYLKMLVVGGIDRVYEIGRLFRNEGMDL-THNPEFTTCEFYWAYADYDDLMKFTEEMLSSMVKTICGTTKIkfhpdgkgpdakeveidftppfrrisM---ISGLEEVLETKLPtPLESDEANAALQAlcKKHNVECKPPLTTARllDKLVGEFLESQClnptFICDHPKIMSPLAKD-HRSKPGLTERFELFANYHEMCNAYTElndpVEQRSRFESQAKDKDAGDDeaMFvdEDFCRALEYGLPPTAGWGMGIDRLCMLLTDQNSIKEVLLFPA 557
                 5678999***********99*****************99876776543233233336899999******9998875443..4578*************99999988777665..579********962567899***************************87666654444444.44412267999*******************************9986.599********************999999999988877666567889*************999995552...33333444455541477788777666522344555666666654228****988876333449**********8665.559*****************9987661112556666777777776655554334479**************************************95 PP

>> TIGR00457  asnS: asparagine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.7   0.0   1.6e-21   7.3e-19      12     449 ..      95     558 ..      86     561 .. 0.74

  Alignments for each domain:
  == domain 1    score: 65.7 bits;  conditional E-value: 1.6e-21
   TIGR00457  12 kkavdeevkvsgWvktkRss.kkiaFlelr.DGsslk.........alqavikkeleeeleqelkklttgssvsvsgkvvespkkkqelElkvk..kievvgeae....eedyplqkkehsleflrelahLrlRtktlsAvlkvRsalskaiheyfqkegfvkvstPiltssdcEGagelFkvktegvdfskdffgkeayLtvsgqlelEalal.alskvytlgptFRAEksntkRHlsEfwmiEpElaFvnledllqlieelikyiikavlee..............akqelkfleknvekkkikkleeiisskfar.itYtdAieiLkesdakkkfeledl.wGvdlktehErflaeeyfksPvfvtdyPkeikaFYmkqnddektvaavDllvPkiGEiiGGseReddldkLeerlkeegldte...elkWyld.....lRkyGsvphsGfGlGleRlvayltglenirdaipfpRt 449
                    ++e v++ g ++++Rs  k + F +lr DG  ++         ++ a+ ++e   +  + + +l+ g  v v    v +p+k+++ El++   k+e+++       +++y l  ke   ++ +    L +  +t   +   R+++ + i+++ + +gf++v+tP++       +++ F +        ++  +++ y+ v+  l+l +l++  +++vy +g  FR E  + + H  Ef+  E   a+++ +dl++++ee+++ ++k++                  + e++f       ++i+ lee++++k ++ ++ ++A + L+   +k++ e+++      l  +    + e    +P+f+ d+Pk + +    +  ++  ++ ++l+  ++ E++   +  +d  +  +r++++  d++   +   ++d        yG  p +G+G+G++Rl   lt+++ i+++ +fp +
  MMETSP1137-20121227|1554_1  95 DVLSGECVSLAGRIASRRSGgKGLVFFDLRgDGHKVQvfadarefgEITALAEEERLPAFLKLMGTLKRGDVVGV----VGKPGKTKRGELSIFpsKMELLTPCLhmmpKATYGLVDKET--RYRQRYLDLIMN-STTREIFVTRTKVVNFIRRFLDMQGFLEVETPMMNMIPGGATAKPFITL-------HNELNRNLYMRVAPELYLKMLVVgGIDRVYEIGRLFRNEGMDLT-HNPEFTTCEFYWAYADYDDLMKFTEEMLSSMVKTICGTtkikfhpdgkgpdaKEVEIDFTPPFRRISMISGLEEVLETKLPTpLESDEANAALQALCKKHNVECKPPlTTARLLDKLVGEFLESQCLNPTFICDHPKIMSPLAKDHRSKPGLTERFELF-ANYHEMCNAYTELNDPVEQRSRFESQAKDKDagdDEAMFVDedfcrALEYGLPPTAGWGMGIDRLCMLLTDQNSIKEVLLFPAM 558
                 566788899999999999652679999997567643311111100023333333333333333333444433333....34577777777777444888876543233378899888874..444444444443.455678899************************9877665556666555.......345899************99876379*************98865.9**********************************998889999999877544444666666667789999*******986549****99999999889999999875666676666666667788899************998888999999999976.5899***999888887777888887777776333455666633311457********************************975 PP

>> TIGR00468  pheS: phenylalanine--tRNA ligase, alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   1.4       2.6   1.2e+03      20      60 ..       8      48 ..       2      54 .. 0.64
   2 !   25.6   0.0   3.1e-09   1.4e-06     182     241 ..     299     360 ..     293     362 .. 0.82
   3 !    8.6   0.0   0.00047      0.22     288     310 ..     529     551 ..     514     555 .. 0.84

  Alignments for each domain:
  == domain 1    score: -3.7 bits;  conditional E-value: 2.6
   TIGR00468 20 kliklikevkeeleeeltklkkellkaeaekklkfrkydvk 60
                + ++   +++++ ++++t+  k  +k++a ++l+ +  d++
  MMETSP1137-20121227|1554_1  8 QEAQAKAKAEKAAAKAATEADKPAKKEGAAQQLEEEDEDID 48
                23333344556777777778888888888888888877775 PP

  == domain 2    score: 25.6 bits;  conditional E-value: 3.1e-09
   TIGR00468 182 rifsigrvfRrdavdatHlpeFhQveglvv..dknvslknLkglleeflkklfgetevrfrp 241
                 r+  igr fR++ +d tH peF+ +e+ ++  d++  +k    +l +++k + g t+++f+p
  MMETSP1137-20121227|1554_1 299 RVYEIGRLFRNEGMDLTHNPEFTTCEFYWAyaDYDDLMKFTEEMLSSMVKTICGTTKIKFHP 360
                 78889**********************99722445556666677788888888999999987 PP

  == domain 3    score: 8.6 bits;  conditional E-value: 0.00047
   TIGR00468 288 vlafGlgieRlamlkygikdiRd 310
                   ++G+gi+Rl ml  + + i++
  MMETSP1137-20121227|1554_1 529 TAGWGMGIDRLCMLLTDQNSIKE 551
                 679***********999888876 PP

>> TIGR02367  PylS_Cterm: pyrrolysine--tRNA ligase, C-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.1   1.7e-06   0.00076      29     159 ..     233     356 ..     205     362 .. 0.71
   2 ?   -0.1   0.0      0.22     1e+02     204     227 ..     528     551 ..     523     553 .. 0.88

  Alignments for each domain:
  == domain 1    score: 16.7 bits;  conditional E-value: 1.7e-06
   TIGR02367  29 lklerelakalvdrGfvevkspi..liskellekmtideddelfkqvfrvdekkclrpmlapnlynllrkldrllekpirifeiGscyrkesdGsehleeftmlnlv....elGspeeerrerleelikevleelGi 159
                 +k+ + + ++l  +Gf+ev++p+  +i+  + +k  i+ ++el+++++           +ap ly  +  l  ++    r++eiG  +r e     h  eft  ++     ++   ++ ++e l++++k++   + i
  MMETSP1137-20121227|1554_1 233 TKVVNFIRRFLDMQGFLEVETPMmnMIPGGATAKPFITLHNELNRNLYM---------RVAPELYLKM--L--VVGGIDRVYEIGRLFRNEGMDLTHNPEFTTCEFYwayaDYDDLMKFTEEMLSSMVKTICGTTKI 356
                 456678999*************944599999999999999999887663.........489***9543..3..4445559**********************99875111144444556667777777766666655 PP

  == domain 2    score: -0.1 bits;  conditional E-value: 0.22
   TIGR02367 204 pwvGlGfGlerllkvredtknvrs 227
                 p  G G+G++rl ++  d++ +++
  MMETSP1137-20121227|1554_1 528 PTAGWGMGIDRLCMLLTDQNSIKE 551
                 77899**********999999986 PP

>> TIGR00442  hisS: histidine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.0     0.015       6.9      16      43 ..     231     258 ..     221     260 .. 0.87
   2 ?   -2.0   0.0      0.62   2.8e+02      99     112 ..     299     312 ..     293     325 .. 0.79
   3 !    6.9   0.0    0.0013      0.59     297     320 ..     528     551 ..     521     558 .. 0.89

  Alignments for each domain:
  == domain 1    score: 3.3 bits;  conditional E-value: 0.015
   TIGR00442  16 krqkveetirevfesygfeeietPilEk 43 
                  r kv++ ir+ ++  gf e+etP++++
  MMETSP1137-20121227|1554_1 231 TRTKVVNFIRRFLDMQGFLEVETPMMNM 258
                 67899********************976 PP

  == domain 2    score: -2.0 bits;  conditional E-value: 0.62
   TIGR00442  99 klyyigpvFRyErp 112
                 ++y+ig++FR+E  
  MMETSP1137-20121227|1554_1 299 RVYEIGRLFRNEGM 312
                 89*********966 PP

  == domain 3    score: 6.9 bits;  conditional E-value: 0.0013
   TIGR00442 297 pavGfaiGieRllllleeegllee 320
                 p+ G+++Gi+Rl++ll +++ ++e
  MMETSP1137-20121227|1554_1 528 PTAGWGMGIDRLCMLLTDQNSIKE 551
                 788*************99998876 PP

>> TIGR02794  tolA_full: protein TolA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3  14.8    0.0046       2.1     191     227 ..       3      40 ..       1      58 [. 0.70

  Alignments for each domain:
  == domain 1    score: 5.3 bits;  conditional E-value: 0.0046
   TIGR02794 191 k.KakaeaeaKakaeeakaKaeaeAkaKAeaeAkaKae 227
                 k +ak+ea+aKakae+a+aKa++eA++ A++e +a++ 
  MMETSP1137-20121227|1554_1   3 KrRAKQEAQAKAKAEKAAAKAATEADKPAKKEGAAQQL 40 
                 33788888888888888888887777777777554443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (565 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       164  (0.0399805); expected 82.0 (0.02)
Passed bias filter:                      150  (0.0365675); expected 82.0 (0.02)
Passed Vit filter:                        29  (0.00706972); expected 4.1 (0.001)
Passed Fwd filter:                         9  (0.00219405); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.58u 0.19s 00:00:00.77 Elapsed: 00:00:00.50
# Mc/sec: 1491.48
//
Query:       MMETSP1137-20121227|1555_1  [L=239]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (239 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       100  (0.0243784); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.14s 00:00:00.33 Elapsed: 00:00:01.33
# Mc/sec: 237.18
//
Query:       MMETSP1137-20121227|1556_1  [L=228]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (228 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       104  (0.0253535); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.15s 00:00:00.34 Elapsed: 00:00:00.53
# Mc/sec: 567.80
//
Query:       MMETSP1137-20121227|1557_1  [L=671]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (671 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        98  (0.0238908); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.17s 00:00:00.59 Elapsed: 00:00:00.48
# Mc/sec: 1845.10
//
Query:       MMETSP1137-20121227|1558_1  [L=259]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (259 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        92  (0.0224281); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.18s 00:00:00.38 Elapsed: 00:00:00.34
# Mc/sec: 1005.45
//
Query:       MMETSP1137-20121227|1559_1  [L=43]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (43 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        11  (0.00268162); expected 82.0 (0.02)
Passed bias filter:                       11  (0.00268162); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.19s 00:00:00.27 Elapsed: 00:00:00.40
# Mc/sec: 141.89
//
Query:       MMETSP1137-20121227|1560_1  [L=634]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (634 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        98  (0.0238908); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.28s 00:00:00.58 Elapsed: 00:00:00.70
# Mc/sec: 1195.44
//
Query:       MMETSP1137-20121227|1561_1  [L=261]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (261 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        64  (0.0156021); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.20s 00:00:00.33 Elapsed: 00:00:00.42
# Mc/sec: 820.22
//
Query:       MMETSP1137-20121227|1562_1  [L=229]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      9e-15   52.5   0.0    5.4e-13   46.7   0.0    2.3  2  TIGR01382 PfpI: intracellular protease, PfpI family
    4.2e-12   44.0   0.0    4.8e-11   40.5   0.0    2.1  2  TIGR01383 not_thiJ: DJ-1 family protein


Domain annotation for each model (and alignments):
>> TIGR01382  PfpI: intracellular protease, PfpI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.7   0.0   2.7e-16   5.4e-13      14     124 ..      27     161 ..      25     170 .. 0.82
   2 !    3.4   0.0    0.0051        10     129     168 ..     186     228 ..     173     229 .] 0.75

  Alignments for each domain:
  == domain 1    score: 46.7 bits;  conditional E-value: 2.7e-16
   TIGR01382  14 EllePlkalkeaGheVtvvs.gkekg.eivk.................ekkgakvtvdatlddvdaeeydalvipGGra.peylrldekvielvrefaekgKpvaaIChgpqlLisAd.....vlrGkkltaypai 124
                 E ++P++++ +aG eV+ +s ++++  +                     k  a  + + +l d d++ yda+  +GG +      + + ++ +++ ++++gKpvaa+Chgp + ++ +     +l+Gk  t +  +
  MMETSP1137-20121227|1562_1  27 EAVHPYQKFVDAGFEVEWASiTGTAScDP-SsidaskedkicmdfwndAKMKALTEKQMRLADADPAAYDAVFFAGGFGvMWDFPESKAAQDIIKTMYKAGKPVAAVCHGPIVFANIEidgehILKGKECTGFTNA 161
                 7889*************999644333133.247789999999999987667777788899******************978889999999***********************99865223337999999877665 PP

  == domain 2    score: 3.4 bits;  conditional E-value: 0.0051
   TIGR01382 129 knAGaeyvdir...evvvvdanlvtakvpadlpafvseilkll 168
                 k+ G+ ++d +    +v+v +n+ t ++p+ +     ei+k+l
  MMETSP1137-20121227|1562_1 186 KEKGGLFQDGGdfqPKVCVAGNVFTGQNPSSAAPLADEIVKAL 228
                 5566666665422236899999*******99999999999987 PP

>> TIGR01383  not_thiJ: DJ-1 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.5   0.0   2.4e-14   4.8e-11      54     134 ..      84     168 ..      38     190 .. 0.86
   2 ?    1.6   0.0      0.02        42     141     168 ..     201     228 ..     191     229 .] 0.88

  Alignments for each domain:
  == domain 1    score: 40.5 bits;  conditional E-value: 2.4e-14
   TIGR01383  54 ksledveeeefDvivLpGGlpGaenlkdsklleellkkqeskgklvAAICaaPivllaaev....llgkkkatcypslkekllne 134
                  +l+d++ +++D++  +GG+  +  + +sk+ ++++k ++++gk vAA+C +Piv+++ e+    +l++k++t++ +++e+ + +
  MMETSP1137-20121227|1562_1  84 MRLADADPAAYDAVFFAGGFGVMWDFPESKAAQDIIKTMYKAGKPVAAVCHGPIVFANIEIdgehILKGKECTGFTNAEENAVGK 168
                 568999999**********************************************9876532222667789****9999987654 PP

  == domain 2    score: 1.6 bits;  conditional E-value: 0.02
   TIGR01383 141 avvvdgkliTsrGpgtaieFalelvelL 168
                 +v v g++ T++ p+ a   a e+v++L
  MMETSP1137-20121227|1562_1 201 KVCVAGNVFTGQNPSSAAPLADEIVKAL 228
                 478899******************9988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (229 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        82  (0.0199902); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.22u 0.15s 00:00:00.37 Elapsed: 00:00:00.33
# Mc/sec: 915.92
//
Query:       MMETSP1137-20121227|1563_1  [L=234]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (234 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        61  (0.0148708); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.15s 00:00:00.35 Elapsed: 00:00:00.30
# Mc/sec: 1029.51
//
Query:       MMETSP1137-20121227|1564_1  [L=250]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.6e-20   71.4   0.0    1.9e-20   71.1   0.0    1.1  1  TIGR00138 gidB: 16S rRNA (guanine(527)-N(7))-methyltransferase GidB
     0.0017   16.5   0.0     0.0025   15.9   0.0    1.2  1  TIGR02469 CbiT: precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit
     0.0019   15.5   0.0     0.0034   14.7   0.0    1.4  2  TIGR03534 RF_mod_PrmC: protein-(glutamine-N5) methyltransferase, release factor-specific


Domain annotation for each model (and alignments):
>> TIGR00138  gidB: 16S rRNA (guanine(527)-N(7))-methyltransferase GidB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.1   0.0   1.4e-23   1.9e-20       2     132 ..      56     190 ..      55     229 .. 0.86

  Alignments for each domain:
  == domain 1    score: 71.1 bits;  conditional E-value: 1.4e-23
   TIGR00138   2 kqylellqkwNkriNLtslkeeeelierhlldslkl...lellkeskkkviDiGsGaGfPGiplallrpelkltLlesnkKkvaFLkevkkeLglenveilkarvek..keeeekfdvitsralaslnellelalk 132
                   ylell+ +N+r N  s +   + +  h+ ds++l   +++lk+ + +v+D+GsG+G+P++ +a ++pe+ ++ les+++k++FL+ + +eL+l+ ++     + +  +++  + d++t++a+  l+e+  +a  
  MMETSP1137-20121227|1564_1  56 AXYLELLLAYNERTNIYSKNA-YRHLPFHVHDSISLglvVSELKKEDXAVLDLGSGSGLPSLLIACVNPEIPVHALESKSRKTRFLQRAGRELQLPLYTSTTCNIVEfaRSSYVDADFVTAKAFKPLSEVSPIAAA 190
                 57***************9999.688899******86222666666669************************************************988877777775766778899***********99877765 PP

>> TIGR02469  CbiT: precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   1.8e-06    0.0025      15      68 ..      95     149 ..      89     175 .. 0.83

  Alignments for each domain:
  == domain 1    score: 15.9 bits;  conditional E-value: 1.8e-06
   TIGR02469  15 Lrlkkgd.vllDiGaGtGsvtieaarlvpkgrvyaierneealelieeNlrrfgv 68 
                  +lkk+d  +lD G+G+G  ++ +a   p++ v a+e +  + +++++  r++++
  MMETSP1137-20121227|1564_1  95 SELKKEDxAVLDLGSGSGLPSLLIACVNPEIPVHALESKSRKTRFLQRAGRELQL 149
                 567777779*************************************998888765 PP

>> TIGR03534  RF_mod_PrmC: protein-(glutamine-N5) methyltransferase, release factor-specific
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.0   0.0       1.2   1.7e+03     182     197 ..      13      28 ..      10      38 .. 0.77
   2 !   14.7   0.0   2.5e-06    0.0034      80     137 ..      93     149 ..      88     175 .. 0.81

  Alignments for each domain:
  == domain 1    score: -4.0 bits;  conditional E-value: 1.2
   TIGR03534 182 fEPklALvggedGldl 197
                 + P++AL+ ++  l +
  MMETSP1137-20121227|1564_1  13 YQPRTALYRHPASLCC 28 
                 8899999988777755 PP

  == domain 2    score: 14.7 bits;  conditional E-value: 2.5e-06
   TIGR03534  80 aleelkkkeklkvlDlgtGsGaIalalakelpdakviavDiseeAlkvarkNakrlgl 137
                 +++elkk++   vlDlg+GsG   l +a   p++ v+a + +++  +  ++  ++l+l
  MMETSP1137-20121227|1564_1  93 VVSELKKED-XAVLDLGSGSGLPSLLIACVNPEIPVHALESKSRKTRFLQRAGRELQL 149
                 667777777.8****************************9988877777766666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (250 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        82  (0.0199902); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.22u 0.13s 00:00:00.35 Elapsed: 00:00:00.39
# Mc/sec: 846.08
//
Query:       MMETSP1137-20121227|1565_1  [L=75]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (75 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        68  (0.0165773); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.17s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 353.54
//
Query:       MMETSP1137-20121227|1566_1  [L=325]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (325 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       129  (0.0314481); expected 82.0 (0.02)
Passed bias filter:                      119  (0.0290102); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.15s 00:00:00.43 Elapsed: 00:00:00.37
# Mc/sec: 1159.36
//
Query:       MMETSP1137-20121227|1567_1  [L=256]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (256 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        85  (0.0207216); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.11s 00:00:00.32 Elapsed: 00:00:00.55
# Mc/sec: 614.35
//
Query:       MMETSP1137-20121227|1569_1  [L=372]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.5e-20   70.3   1.4    1.3e-18   65.1   1.0    2.6  1  TIGR01622 SF-CC1: splicing factor, CC1-like family
    4.1e-17   60.4   0.2    5.7e-13   46.7   0.0    3.5  3  TIGR01628 PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family
    3.8e-16   57.4   0.1    2.3e-15   54.9   0.1    2.0  1  TIGR01661 ELAV_HUD_SF: ELAV/HuD family splicing factor
    4.6e-09   33.1   0.0      2e-07   27.7   0.0    2.2  2  TIGR01642 U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor
    4.7e-08   30.0   0.0    4.7e-08   30.0   0.0    2.1  2  TIGR01645 half-pint: poly-U binding splicing factor, half-pint family
    4.6e-07   26.8   0.0      1e-05   22.4   0.0    2.4  2  TIGR01648 hnRNP-R-Q: hnRNP-R, Q splicing factor family
    1.9e-06   25.6   0.1    1.8e-05   22.4   0.0    2.3  3  TIGR01659 sex-lethal: sex-lethal family splicing factor


Domain annotation for each model (and alignments):
>> TIGR01622  SF-CC1: splicing factor, CC1-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.1   1.0   2.2e-21   1.3e-18      98     294 ..      78     279 ..      60     290 .. 0.72

  Alignments for each domain:
  == domain 1    score: 65.1 bits;  conditional E-value: 2.2e-21
   TIGR01622  98 rrerrekeerlkeelteeeRDartvfvlqlalklreRdlkEFFskvgkvrdvrlikDrnSr.....rSkGv.............aYvEFydvesvqlAlaltGqkllgvPvivqaseAEKNraakaatelsgdipnsiadlkLYvGnlhfnitEqeLrqiFepFGeielvqlqkDpetGrskGyGFiqFsdaeeakeAleklNGlelAGReikvg 294
                 rr    +ee+ +  ++ + R +rtvfv ++++  +   l   F + g+v  vr+ +   ++     r+  +             aYv F d+ s  +A++++G    g               a+++   sg+  ++ +++ +++Gnl f+ +E++L ++F   G ie+v++ +Dp+t + kG+G++ Fsd +   eAle l   el GR ++v 
  MMETSP1137-20121227|1569_1  78 RRXAPSREEKAETAEEVAARLRRTVFVGNVPVTTKRLALAKHFRTFGPVESVRIRSAASANlkmakRAAVItgtldsnvrdsvnAYVVFDDEASAAKAIEANGAVAFGGT------------SASTSAAPSGQSAAANTKRSVFLGNLAFDCSEESLWELFSTCGTIESVRIVRDPQTQQGKGFGYVCFSDKNAVEEALE-LHERELGGRRLRVF 279
                 344334455556666778999******************************99865432221111122221211222222222367777777777777777777655542............222222223333333345779*******************************************************97.7889********95 PP

>> TIGR01628  PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.1   0.0    0.0019       1.1     262     318 ..      77     132 ..      56     141 .. 0.73
   2 ?    3.5   0.0     0.011       6.6      45      61 ..     162     178 ..     146     191 .. 0.58
   3 !   46.7   0.0   9.7e-16   5.7e-13       2     358 ..     207     278 ..     198     368 .. 0.71

  Alignments for each domain:
  == domain 1    score: 6.1 bits;  conditional E-value: 0.0019
   TIGR01628 262 aeReaelkakfeelkqerkekaqgvNlYvkNlddtvddekLrelFeefGeitSakvm 318
                 a+R a  +++  e+ +e +       ++v N+  t     L ++F  fG + S+++ 
  MMETSP1137-20121227|1569_1  77 ARRXAPSREEKAETAEE-VAARLRRTVFVGNVPVTTKRLALAKHFRTFGPVESVRIR 132
                 55555555544444444.666677788899999999999999999999999888874 PP

  == domain 2    score: 3.5 bits;  conditional E-value: 0.011
   TIGR01628  45 aYvNfqnladAerAldt 61 
                 aYv f+++a+A +A+++
  MMETSP1137-20121227|1569_1 162 AYVVFDDEASAAKAIEA 178
                 45555555555555544 PP

  == domain 3    score: 46.7 bits;  conditional E-value: 9.7e-16
   TIGR01628   2 SlyvGdLdedvtEavLyelFkevgsvlsvRvCrDsvtrrSLgYaYvNfqnladAerAldtlnyknlkgkpiRlmwsqRdPslRksGvgNifvKnLdksidnkaLfdtFskfGnilsckvatdeeGkSkgYgfvhfedeesAkeAieklNgvllndkevyvgkfikksereatkekkftNlYvKnlddsvtedklrelFakfGeitSaivkkdeknrkrgfafvnyekaedAkkAveelngkkitlaatgkilyVgraqkraeReaelkakfeelkqerkekaqgvNlYvkNlddtvddekLrelFeefGeitSakvmldekekSkgFGFVcfssqeeAnkAvtelhgkilngkPLyv 358
                 S++ G+L  d  E+ L+elF++ g++ svR+ rD  t++  g++Yv f++++  e Al+                                                                                                                                                                                                                                                                                             lh + l+g+ L v
  MMETSP1137-20121227|1569_1 207 SVFLGNLAFDCSEESLWELFSTCGTIESVRIVRDPQTQQGKGFGYVCFSDKNAVEEALE---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LHERELGGRRLRV 278
                 45555555555555555555555555555555555555555555555555555555555.............................................................................................................................................................................................................................................................................................5555555554433 PP

>> TIGR01661  ELAV_HUD_SF: ELAV/HuD family splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.9   0.1   3.9e-18   2.3e-15     201     349 ..     140     285 ..      20     287 .. 0.68

  Alignments for each domain:
  == domain 1    score: 54.9 bits;  conditional E-value: 3.9e-18
   TIGR01661 201 taaaiaplhkaaakfrlsaldflavlakrlqqhavaqqaaaqrasplaadgavaglaa.gaqiaasdgagycifvynlspdtdeavl.qlfgpfGavqsvkiirdlttnkckGygfvsmtnydeaalailslnGytlgnrvlqvsfktnka 349
                 + a  a++  ++     +  d ++  a    ++  +  +a + ++ +a  g++a+  a  ++ +a+  +   +f+ nl+ d  e  l  lf+  G+++sv+i+rd++t++ kG+g+v  ++ + a+   l l   +lg+r l+v   t++a
  MMETSP1137-20121227|1569_1 140 KMAKRAAVITGTLD--SNVRDSVN--AYVVFDDEASAAKAIEANGAVAFGGTSASTSAaPSGQSAAANTKRSVFLGNLAFDCSEESLwELFSTCGTIESVRIVRDPQTQQGKGFGYVCFSDKN-AVEEALELHERELGGRRLRVFRCTSAA 285
                 22222222222211..11112111..2222333333333344444444444333332202223333457899*********7655555********************************976.5555567999********998877776 PP

>> TIGR01642  U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    3.2   0.0    0.0092       5.4     167     197 ..      90     120 ..      33     140 .. 0.71
   2 !   27.7   0.0   3.5e-10     2e-07     287     375 ..     196     283 ..     169     289 .. 0.87

  Alignments for each domain:
  == domain 1    score: 3.2 bits;  conditional E-value: 0.0092
   TIGR01642 167 aveqqatrkaRrlyvgniPpeakeeavvdFf 197
                 + e+ a r  R ++vgn+P ++k  a+ + f
  MMETSP1137-20121227|1569_1  90 TAEEVAARLRRTVFVGNVPVTTKRLALAKHF 120
                 567778899999*********9998887776 PP

  == domain 2    score: 27.7 bits;  conditional E-value: 3.5e-10
   TIGR01642 287 vnsktvldsedklyignLPldlkddqvkeLLesFGdLkaFnliKdlatGlsKGyaFceykdssvtdlAiaaLnGiklgdkkLnvkrAtv 375
                 ++  ++ + +  +++gnL +d  ++ + eL    G + +  +++d +t + KG++++ + d +  + A++ L   +lg+++L v r t 
  MMETSP1137-20121227|1569_1 196 SGQSAAANTKRSVFLGNLAFDCSEESLWELFSTCGTIESVRIVRDPQTQQGKGFGYVCFSDKNAVEEALE-LHERELGGRRLRVFRCTS 283
                 556677888999*******************************************************986.888999999999877765 PP

>> TIGR01645  half-pint: poly-U binding splicing factor, half-pint family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -5.7   6.1       5.5   3.2e+03     287     417 ..      22     161 ..       5     210 .. 0.49
   2 !   30.0   0.0   8.1e-11   4.7e-08     208     295 ..     213     300 ..     198     351 .. 0.77

  Alignments for each domain:
  == domain 1    score: -5.7 bits;  conditional E-value: 5.5
   TIGR01645 287 Patvsal.Paaaavaaaaatakitaaeavagaavlglra.qspatassslvtdieakavvssakkeaeevpalpqaapavlkdeviteekPvaPsllaiPslvaplglvaPteinpsllaspqlkieekiee.............v 417
                 P+ ++a+ P +a  a+ a t k   + + ++ a  +  a + p     + + +++ ++         ee +  ++ + a l+  v+ ++ Pv+   la+     + g v    i  +  a  +lk+ +++                
  MMETSP1137-20121227|1569_1  22 PTKPAAIrPLTAPSAVGATTQKHPGQLSSTSGAKGSTAAdEKPF----AQMRTVGVRPAARRXAPSREEKAETAEEVAARLRRTVFVGNVPVTTKRLALAKHFRTFGPVESVRIRSAASA--NLKMAKRAAVitgtldsnvrdsvN 161
                 55555552334444444555555444443333332222102222....122233333333333333346666677777778888999999999999999999999888888888766444..345544433312222222222221 PP

  == domain 2    score: 30.0 bits;  conditional E-value: 8.1e-11
   TIGR01645 208 vhpdlseedlksvfeafGeivkcklaraptlrkhkGfGflefenlqsqseaiasmnlfdlGGqllrvGkavtPPdal.lqPatvsalPa 295
                 +  d see l  +f + G i + ++ r+p +++ kGfG++ f ++++ +ea+  +   +lGG+ lrv ++    +   +    +++ P+
  MMETSP1137-20121227|1569_1 213 LAFDCSEESLWELFSTCGTIESVRIVRDPQTQQGKGFGYVCFSDKNAVEEALE-LHERELGGRRLRVFRCTSAASKGgARGGPPGGRPS 300
                 56799**********************************************96.66789**********98765444344445555555 PP

>> TIGR01648  hnRNP-R-Q: hnRNP-R, Q splicing factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.0     0.044        26     223     268 ..      88     131 ..      81     150 .. 0.78
   2 !   22.4   0.0   1.8e-08     1e-05      52     124 ..     199     271 ..     176     288 .. 0.77

  Alignments for each domain:
  == domain 1    score: 1.2 bits;  conditional E-value: 0.044
   TIGR01648 223 vevdedvmakv.kilyvrnlmletteeiieksfsefkpGavervkki 268
                  e+ e+v a++ + ++v n+ ++t    + k f  f  G ve v+ i
  MMETSP1137-20121227|1569_1  88 AETAEEVAARLrRTVFVGNVPVTTKRLALAKHFRTF--GPVESVR-I 131
                 566777777762579*********************..8888875.4 PP

  == domain 2    score: 22.4 bits;  conditional E-value: 1.8e-08
   TIGR01648  52 gaqPerGcevfvGkiPrdlyedelvPlfekvGkiyelrlmmd.ldGknrGyafvtfcnkeeakeavkelnnyei 124
                 +a  +    vf+G +  d  e+ l  lf + G i  +r++ d    + +G+ +v f++k++ +ea+   ++ e+
  MMETSP1137-20121227|1569_1 199 SAAANTKRSVFLGNLAFDCSEESLWELFSTCGTIESVRIVRDpQTQQGKGFGYVCFSDKNAVEEALEL-HEREL 271
                 333444567*********************************777889****************9864.44454 PP

>> TIGR01659  sex-lethal: sex-lethal family splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.0      0.15        87     114     139 ..     106     131 ..      37     139 .. 0.83
   2 !   22.4   0.0     3e-08   1.8e-05      73     166 ..     174     264 ..     149     291 .. 0.68
   3 ?   -2.2   0.0      0.92   5.4e+02     290     332 ..     286     333 ..     262     344 .. 0.56

  Alignments for each domain:
  == domain 1    score: 0.4 bits;  conditional E-value: 0.15
   TIGR01659 114 ylpqdmtdrelyalfrtigpintcri 139
                  +p   +   l   frt gp+++ ri
  MMETSP1137-20121227|1569_1 106 NVPVTTKRLALAKHFRTFGPVESVRI 131
                 55655556667788********9999 PP

  == domain 2    score: 22.4 bits;  conditional E-value: 3e-08
   TIGR01659  73 atlgsvgnlanaastnslnslgsggsddndtrasgtnlivnylpqdmtdrelyalfrtigpintcrimrdyktgysfgyafvdfaseadsqrai 166
                  ++ + g +a   ++ s  ++ sg   +  + ++   + +  l  d ++  l+ lf t g i++ ri+rd +t    g+++v f+ +     a+
  MMETSP1137-20121227|1569_1 174 KAIEANGAVAFGGTSASTSAAPSG---QSAAANTKRSVFLGNLAFDCSEESLWELFSTCGTIESVRIVRDPQTQQGKGFGYVCFSDKNAVEEAL 264
                 444444444443344444444455...333444555677788999**************************99999999999998776655555 PP

  == domain 3    score: -2.2 bits;  conditional E-value: 0.92
   TIGR01659 290 ikygeygtgngg...vaggsaanlp..qppafmgannmvhrgrqkksr 332
                  k+g  g+  gg   +++g  ++++    pa  +a+  vh  r++k+r
  MMETSP1137-20121227|1569_1 286 SKGGARGGPPGGrpsAGAGXLKGVKrwGAPARAAAQPAVHSHRDRKKR 333
                 444444433332000233333333311467777777778777777654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (372 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       102  (0.0248659); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.43u 0.14s 00:00:00.57 Elapsed: 00:00:00.50
# Mc/sec: 982.00
//
Query:       MMETSP1137-20121227|1570_1  [L=504]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (504 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       153  (0.0372989); expected 82.0 (0.02)
Passed bias filter:                      106  (0.0258411); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.15s 00:00:00.61 Elapsed: 00:00:00.64
# Mc/sec: 1039.41
//
Query:       MMETSP1137-20121227|1572_1  [L=461]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (461 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       117  (0.0285227); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.15s 00:00:00.47 Elapsed: 00:00:00.51
# Mc/sec: 1193.08
//
Query:       MMETSP1137-20121227|1573_1  [L=357]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.3e-42  143.2   4.9    5.9e-40  135.3   3.4    2.1  1  TIGR01033 TIGR01033: DNA-binding regulatory protein, YebC/PmpR family


Domain annotation for each model (and alignments):
>> TIGR01033  TIGR01033: DNA-binding regulatory protein, YebC/PmpR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  135.3   3.4   1.4e-43   5.9e-40       2     237 ..     100     347 ..      99     348 .. 0.93

  Alignments for each domain:
  == domain 1    score: 135.3 bits;  conditional E-value: 1.4e-43
   TIGR01033   2 aGhskwanikhrkekqdakkgkiftklikeiivAakeGggdpesNprLrtaiekAkaanlpkdnieraikkgageadeenyeeitYEgyapgGvavlvealtDNknRtaselrsalnkkggsLgesgsvsylFsrkgvievekee..ieeeellealieagaedieeedde...................ievitepeelekvkeaLekkglkieeaeiklipettveldeeqaekllklidalEdldDvqevyhNl 237
                 aGhsk++n+khrk++qda k  ++++++ +i  A++      +     ++++ +Ak+a++pk+ +e+a++++++   ++n +  +YEg a g v v+ve+ltDN+ Rta ++r+al+  gg++g+sg+ s+ Fsrkg++++e +   ++ e+l+e +i+aga+d+ e  de                   ++v t+p+el+ vk++L ++ ++  ++++ + +++ v+l  e+   + +  + l dl+Dv++v+hNl
  MMETSP1137-20121227|1573_1 100 AGHSKYHNTKHRKARQDASKRSLVHQFSGAIRRAVRY-----KDEVMVKAIVARAKKAGVPKEVVEKALNNSKD---NSNAQSDVYEG-AIGSVLVIVEVLTDNRSRTAMKIREALKAAGGAMGTSGCASWAFSRKGLLSFEGSGgrAAMEALVEVAIDAGADDVLERRDEhlldtataetaeadgasfkLDVWTQPDELALVKSKLVEAAYEPVDERLVFKANQPVALGGEKRDIVDAAFNDLRDLEDVEDVWHNL 347
                 8**********************************96.....677899**********************9987...9999999***9.8999*************************************************99854555**************98877765666666666666677766789***************************************************************6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (357 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       158  (0.0385178); expected 82.0 (0.02)
Passed bias filter:                       99  (0.0241346); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.28u 0.19s 00:00:00.47 Elapsed: 00:00:00.48
# Mc/sec: 981.67
//
Query:       MMETSP1137-20121227|1574_1  [L=55]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        38  (0.00926377); expected 82.0 (0.02)
Passed bias filter:                       37  (0.00901999); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.32
# Mc/sec: 226.86
//
Query:       MMETSP1137-20121227|1575_1  [L=479]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (479 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       125  (0.0304729); expected 82.0 (0.02)
Passed bias filter:                       99  (0.0241346); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.13s 00:00:00.48 Elapsed: 00:00:00.65
# Mc/sec: 972.66
//
Query:       MMETSP1137-20121227|1577_1  [L=106]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (106 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        71  (0.0173086); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.46
# Mc/sec: 304.15
//
Query:       MMETSP1137-20121227|1579_1  [L=309]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.3e-05   20.0   2.9    8.3e-05   20.0   2.0    2.1  2  TIGR01944 rnfB: electron transport complex, RnfABCDGE type, B subunit
    0.00021   18.5   1.8    0.00052   17.2   0.4    2.0  2  TIGR03149 cyt_nit_nrfC: cytochrome c nitrite reductase, Fe-S protein
     0.0048   14.9   0.1     0.0048   14.9   0.1    2.0  2  TIGR02936 fdxN_nitrog: ferredoxin III, nif-specific
     0.0059   13.6   2.7     0.0089   13.0   1.8    1.3  1  TIGR01582 FDH-beta: formate dehydrogenase, beta subunit
  ------ inclusion threshold ------
        1.1    7.1   9.3      0.069   11.0   1.8    2.1  2  TIGR02951 DMSO_dmsB: dimethylsulfoxide reductase, chain B


Domain annotation for each model (and alignments):
>> TIGR01944  rnfB: electron transport complex, RnfABCDGE type, B subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   2.0     1e-07   8.3e-05      97     177 ..      84     167 ..      70     181 .. 0.70
   2 ?   -5.6   2.0         5   4.1e+03      48      58 ..     198     208 ..     196     214 .. 0.68

  Alignments for each domain:
  == domain 1    score: 20.0 bits;  conditional E-value: 1e-07
   TIGR01944  97 aeaekekekkvalideeeCiGCtkCiqaCPvDaivGaakamhtvledlCtgCdl...CvepCPvdcielrpvaeelkswkwdkp 177
                 +e++++k  + +++de++CiGCt C q+      +   +    v ++     d+    +++CPv ci+ + +++ +   k++++
  MMETSP1137-20121227|1579_1  84 DEDGETKRVRFTYVDEHTCIGCTYCTQVARCTFALEPDNGRARVYNQDGDPADViqeAIDSCPVSCIHYVSMEDLVVLEKEREK 167
                 334444778899***************9888877777777777777766666552227999******99988665544444433 PP

  == domain 2    score: -5.6 bits;  conditional E-value: 5
   TIGR01944  48 qCgqCGypGCr 58 
                 +C +C  +GC 
  MMETSP1137-20121227|1579_1 198 RCNNCPTKGCA 208
                 56777777775 PP

>> TIGR03149  cyt_nit_nrfC: cytochrome c nitrite reductase, Fe-S protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.4   6.4e-07   0.00052      20      61 ..      73     115 ..      70     135 .. 0.73
   2 ?   -0.6   0.0      0.19   1.5e+02     170     207 ..     141     176 ..     130     185 .. 0.76

  Alignments for each domain:
  == domain 1    score: 17.2 bits;  conditional E-value: 6.4e-07
   TIGR03149  20 valksvvtlakekke..kakrygmvhdetacigctactdacrev 61 
                 +a+ s + +a++++   k +r++ v de +cigct ct+  r +
  MMETSP1137-20121227|1579_1  73 TAVPSHLRVARDEDGetKRVRFTYV-DEHTCIGCTYCTQVARCT 115
                 5667777788877761244556555.99**********998865 PP

  == domain 2    score: -0.6 bits;  conditional E-value: 0.19
   TIGR03149 170 cvescptkaltfgdlndpdsevskvlkekavyrdkvel 207
                  ++scp  ++ +  ++d    v ++ +ek+v  +k  l
  MMETSP1137-20121227|1579_1 141 AIDSCPVSCIHYVSMEDL--VVLEKEREKQVINNKARL 176
                 579999999999999985..456666667776666665 PP

>> TIGR02936  fdxN_nitrog: ferredoxin III, nif-specific
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.1   5.8e-06    0.0048      53      82 ..      83     112 ..      66     118 .. 0.78
   2 ?   -4.2   0.8         5   4.1e+03      74      77 ..     206     209 ..     193     213 .. 0.53

  Alignments for each domain:
  == domain 1    score: 14.9 bits;  conditional E-value: 5.8e-06
   TIGR02936  53 eeddeeiekkvmvlaneenCiGCeaCarvC 82 
                  ++d+e+++   +  +e++CiGC  C++v 
  MMETSP1137-20121227|1579_1  83 RDEDGETKRVRFTYVDEHTCIGCTYCTQVA 112
                 5777888888888899999******99984 PP

  == domain 2    score: -4.2 bits;  conditional E-value: 5
   TIGR02936  74 GCea 77 
                 GC++
  MMETSP1137-20121227|1579_1 206 GCAT 209
                 3333 PP

>> TIGR01582  FDH-beta: formate dehydrogenase, beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   1.8   1.1e-05    0.0089     122     199 ..      98     175 ..      91     214 .. 0.75

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 1.1e-05
   TIGR01582 122 dhekcigcgyc..iagcpfniprldkvdnraykctlcvdrvsvgqepacvktcptnaisfgskedmk...kraekrvadlksr 199
                 d++ cigc yc  +a c f +    + + ra   +   d   v qe   + +cp ++i++ s ed++   k+ ek+v + k r
  MMETSP1137-20121227|1579_1  98 DEHTCIGCTYCtqVARCTFALE---PDNGRARVYNQDGDPADVIQE--AIDSCPVSCIHYVSMEDLVvleKEREKQVINNKAR 175
                 5679*******55578999874...444555555666788888887..589**************862213445556555655 PP

>> TIGR02951  DMSO_dmsB: dimethylsulfoxide reductase, chain B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   1.8   8.5e-05     0.069      89     152 ..      94     154 ..      72     165 .. 0.60
   2 ?   -1.8   1.5      0.73     6e+02      59      77 ..     194     211 ..     144     219 .. 0.62

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 8.5e-05
   TIGR02951  89 lvlvdqdkciGckycal..acpygapqyeeekgkvskcdlcvdrlekgekpvcvaacplraldfGd 152
                 + +vd+++ciGc yc+   +c +   + ++ + +v   d+     +  +    +++cp+  +++ +
  MMETSP1137-20121227|1579_1  94 FTYVDEHTCIGCTYCTQvaRCTFAL-EPDNGRARVYNQDGD--PADVIQ--EAIDSCPVSCIHYVS 154
                 5689***********7522566543.333333333333332..222222..234555555555555 PP

  == domain 2    score: -1.8 bits;  conditional E-value: 0.73
   TIGR02951  59 ylsiscnhcedpacvkacp 77 
                 y  + cn c    c  +cp
  MMETSP1137-20121227|1579_1 194 YGGMRCNNCPTKGCA-TCP 211
                 556677777777774.455 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (309 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       148  (0.03608); expected 82.0 (0.02)
Passed bias filter:                      123  (0.0299854); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.30u 0.13s 00:00:00.43 Elapsed: 00:00:00.43
# Mc/sec: 948.48
//
Query:       MMETSP1137-20121227|1580_1  [L=161]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (161 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       104  (0.0253535); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.12s 00:00:00.31 Elapsed: 00:00:00.30
# Mc/sec: 708.34
//
Query:       MMETSP1137-20121227|1581_1  [L=235]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.024   11.7   0.0      0.033   11.3   0.0    1.1  1  TIGR04053 sam_11: radical SAM protein, BA_1875 family


Domain annotation for each model (and alignments):
>> TIGR04053  sam_11: radical SAM protein, BA_1875 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0     8e-06     0.033     195     303 ..      60     168 ..      55     174 .. 0.76

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 8e-06
   TIGR04053 195 lealspeeaedvlkflvdvsekvalevktteaplyRRvalqrkalek.kekaklgelyeqlteklvellgepkkeakrralgvrdGkGivFvshkGdvyPsGflPlklGn 303
                  ++l++++a++ +++++d + k+a ++kt  a++  +    +++++   ++ ++ + +++l+ek++++  e+ k+a++++ +  + + ++       v+PsG+l l  G+
  MMETSP1137-20121227|1581_1  60 VNDLQRRHADKQIQYVYDHALKAAYDMKTKGADILMKSNALKEMQQPeLKADSALDASSRLQEKMRKRHAENLKQADKSSGSSGASASLIPALCM-GVHPSGYLHLDGGD 168
                 6789999**************************98877665555443266677778899999999998887666666666555555555554444.49******998886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (235 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       199  (0.0485129); expected 82.0 (0.02)
Passed bias filter:                      123  (0.0299854); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.23u 0.16s 00:00:00.39 Elapsed: 00:00:00.37
# Mc/sec: 838.31
//
Query:       MMETSP1137-20121227|1582_1  [L=244]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (244 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        51  (0.012433); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.10s 00:00:00.32 Elapsed: 00:00:00.54
# Mc/sec: 596.40
//
Query:       MMETSP1137-20121227|1583_1  [L=796]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (796 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       218  (0.0531448); expected 82.0 (0.02)
Passed bias filter:                      117  (0.0285227); expected 82.0 (0.02)
Passed Vit filter:                        18  (0.0043881); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.56u 0.18s 00:00:00.74 Elapsed: 00:00:00.72
# Mc/sec: 1459.21
//
Query:       MMETSP1137-20121227|1584_1  [L=120]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00011   20.2   0.0    0.00016   19.6   0.0    1.3  1  TIGR00105 L31: ribosomal protein L31


Domain annotation for each model (and alignments):
>> TIGR00105  L31: ribosomal protein L31
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.0   3.9e-08   0.00016       9      47 ..      42      82 ..      39      94 .. 0.91

  Alignments for each domain:
  == domain 1    score: 19.6 bits;  conditional E-value: 3.9e-08
   TIGR00105  9 yheikvkctcgnefetrStlgk..delaldicskcHPfytG 47
                y+ ++++ ++g++f++ S + +    l+l+ ++++HP y G
  MMETSP1137-20121227|1584_1 42 YRYMTIVQSDGSSFKMLSGVRQvgRVLQLERDPTNHPLYLG 82
                78889999**************999**************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (120 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        72  (0.0175524); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.14u 0.13s 00:00:00.27 Elapsed: 00:00:00.27
# Mc/sec: 586.62
//
Query:       MMETSP1137-20121227|1585_1  [L=88]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (88 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        34  (0.00828864); expected 82.0 (0.02)
Passed bias filter:                       34  (0.00828864); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.12s 00:00:00.25 Elapsed: 00:00:00.25
# Mc/sec: 464.60
//
Query:       MMETSP1137-20121227|1587_1  [L=217]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00094   15.2   0.0      0.001   15.0   0.0    1.1  1  TIGR02956 TMAO_torS: TMAO reductase sytem sensor TorS


Domain annotation for each model (and alignments):
>> TIGR02956  TMAO_torS: TMAO reductase sytem sensor TorS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   2.5e-07     0.001     870     938 ..     104     172 ..      69     207 .. 0.86

  Alignments for each domain:
  == domain 1    score: 15.0 bits;  conditional E-value: 2.5e-07
   TIGR02956 870 qDievlGvekvrklvalfkqssaeeleeleaaravddsaevkklaHkLKgsaaslglvqltqlCqelEk 938
                 q ++  G++    +++ f +s++e    + +a+a+ d   + k aH LKgs+a +   ql ql  el  
  MMETSP1137-20121227|1587_1 104 QCVDEYGEDLAASFITRFISSTQERRRLIGTAVAACDWETIYKEAHSLKGSCAYVHAAQLAQLAYELQV 172
                 55677799999999*****************************************99999998766654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (217 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       319  (0.0777669); expected 82.0 (0.02)
Passed bias filter:                      120  (0.029254); expected 82.0 (0.02)
Passed Vit filter:                        26  (0.00633837); expected 4.1 (0.001)
Passed Fwd filter:                        12  (0.0029254); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.32u 0.15s 00:00:00.47 Elapsed: 00:00:00.47
# Mc/sec: 609.40
//
Query:       MMETSP1137-20121227|1588_1  [L=287]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0027   14.4   0.0     0.0035   14.0   0.0    1.4  1  TIGR01979 sufS: cysteine desulfurase, SufS family


Domain annotation for each model (and alignments):
>> TIGR01979  sufS: cysteine desulfurase, SufS family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.0   8.6e-07    0.0035     337     367 ..      70     101 ..       4     157 .. 0.78

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 8.6e-07
   TIGR01979 337 egvhahDvatll.deeGiavRsGhhCaqPlmk 367
                 + +h+h va ll d +Gi  RsG  Ca Pl  
  MMETSP1137-20121227|1588_1  70 KMLHPHFVAALLnDLYGIQARSGCSCAGPLAV 101
                 458*******995568*************975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (287 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        85  (0.0207216); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.22u 0.16s 00:00:00.38 Elapsed: 00:00:00.32
# Mc/sec: 1183.78
//
Query:       MMETSP1137-20121227|1589_1  [L=247]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (247 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       115  (0.0280351); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.14s 00:00:00.37 Elapsed: 00:00:00.39
# Mc/sec: 835.93
//
Query:       MMETSP1137-20121227|1590_1  [L=171]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (171 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        66  (0.0160897); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.13s 00:00:00.30 Elapsed: 00:00:00.30
# Mc/sec: 752.34
//
Query:       MMETSP1137-20121227|1591_1  [L=304]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (304 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        62  (0.0151146); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.12s 00:00:00.36 Elapsed: 00:00:00.36
# Mc/sec: 1114.57
//
Query:       MMETSP1137-20121227|1592_1  [L=330]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.8e-09   33.8   0.0    7.7e-09   33.1   0.0    1.2  1  TIGR00676 fadh2: 5,10-methylenetetrahydrofolate reductase
    7.2e-07   26.6   0.0      1e-06   26.2   0.0    1.2  1  TIGR00677 fadh2_euk: methylenetetrahydrofolate reductase


Domain annotation for each model (and alignments):
>> TIGR00676  fadh2: 5,10-methylenetetrahydrofolate reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.1   0.0   3.8e-12   7.7e-09      54     262 ..      57     285 ..      42     295 .. 0.76

  Alignments for each domain:
  == domain 1    score: 33.1 bits;  conditional E-value: 3.8e-12
   TIGR00676  54 kketkletvaHltcvgatr.eeieeilkelk...elgikkllaLRGDipkeeke.......fekeekgleyAseLve.lireekkdfeigvaaYPek....HpeaknleediknlkrKvdaGad.....saitQlFfdnddyfrfvdrvraagievpiipGimpitnlkqllrlleklsgveiPeklvkeleklendkeevrevgievaveqveeLlaegvpglHfytln 262
                   +++++ v+H+ +  +   +++ + l++ +   ++ ++++l+  GD  ++  +         +  + +    +L++  + ++ +  ++g  ++Pe+     +++ + e  i+ l +Kv+  +       ++tQ+ f + +   + d++raag++ p+  G++   + + l+r+++  ++v  P++  +e   +e+ ++++r++  eva  q+++   +g + lH y + 
  MMETSP1137-20121227|1592_1  57 DANQQVQIVPHIAVSRVRSeANLLQRLDRWQlaaSMSLNEVLVVHGDARAHAVDgaaekehTGSLGGPYMKSLDLLDsGVLQQRGISRVGLCGHPEGialdSKSSXSREAAIRILGEKVRVATArglepNIVTQFCFSAGRSTSYIDALRAAGVTQPVSLGVVGPAKSSLLQRMAA-HCRVAPPNSALTEKVDVEQPSAALRSYLYEVAQWQIQRGGXSGLQTLHXYPFG 285
                 5677899999999987754145666666544222678999******9976443210000002233455777888875246666777899*******84333467889999*********9755412223589******************************98888898999999.899****99888888999999****************************9766 PP

>> TIGR00677  fadh2_euk: methylenetetrahydrofolate reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.2   0.0   4.9e-10     1e-06      85     262 ..      91     284 ..      47     296 .. 0.73

  Alignments for each domain:
  == domain 1    score: 26.2 bits;  conditional E-value: 4.9e-10
   TIGR00677  85 eaGiknilalrGdpPkkdedf.......eeveggfkyavdlvkyirskygdkfaigvagyPeahpeaeav....ekdleylkkkvdaGad.....livtqlfydvdkflkfvkkvreigidvPivPGimPinsyksflrlvklskvkiPqeilsalepikdddeavreiGielivelckkllasgvkslhlytl 262
                 +  ++++l + Gd   ++ d         +  g++  ++dl+     +      +g+ g+Pe+ + +++     e+ ++ l +kv   +       ivtq+ + + +  ++++++r++g++ P+  G++   + + ++r++  ++v  P+  l+   ++++  +a+r++  e++   +++   sg+++lh y +
  MMETSP1137-20121227|1592_1  91 SMSLNEVLVVHGDARAHAVDGaaekehtGSLGGPYMKSLDLLDSGVLQQRGISRVGLCGHPEGIALDSKSsxsrEAAIRILGEKVRVATArglepNIVTQFCFSAGRSTSYIDALRAAGVTQPVSLGVVGPAKSSLLQRMAAHCRVAPPNSALTEKVDVEQPSAALRSYLYEVAQWQIQRGGXSGLQTLHXYPF 284
                 556666666666654332221111111133446677777777776666666778999999999875533222337899999999875432122236*********************************99999****************99999999*********************************976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (330 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       109  (0.0265724); expected 82.0 (0.02)
Passed bias filter:                      104  (0.0253535); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.29u 0.18s 00:00:00.47 Elapsed: 00:00:00.65
# Mc/sec: 670.10
//
Query:       MMETSP1137-20121227|1593_1  [L=203]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (203 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        75  (0.0182838); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.17s 00:00:00.36 Elapsed: 00:00:00.30
# Mc/sec: 893.13
//
Query:       MMETSP1137-20121227|1594_1  [L=252]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.4e-13   48.0   0.0    2.9e-13   47.7   0.0    1.1  1  TIGR02251 HIF-SF_euk: dullard-like phosphatase domain
    6.2e-11   40.5   0.0    8.9e-11   40.0   0.0    1.2  1  TIGR02250 FCP1_euk: FCP1-like phosphatase, phosphatase domain
     0.0012   16.3   0.0     0.0022   15.4   0.0    1.4  1  TIGR02245 HAD_IIID1: HAD hydrolase, family IIID


Domain annotation for each model (and alignments):
>> TIGR02251  HIF-SF_euk: dullard-like phosphatase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.7   0.0   2.2e-16   2.9e-13       3     143 ..      35     194 ..      33     224 .. 0.76

  Alignments for each domain:
  == domain 1    score: 47.7 bits;  conditional E-value: 2.2e-16
   TIGR02251   3 tlvLDLDeTLvhs.....slkkak....aieadlklevliek......kiilvyVlkRPyvdeFlerlsklyelvvfTasleeYadkvldildakkkvlsrrlyRescvetngk....yvKdlslv....kkdlskvviiDnsplsyslqpeNaipiksfisde 143
                  +v DLD T+ +s     +   a+    + +    ++ +  +       +   + + RP ++  ++ ls ++   ++Ta++ +Y+++vl+ ld+++ ++ + ++R+   ++  +      Kdl+ +    +++l++vv  D+  ++++ qp+N+++++ + +d 
  MMETSP1137-20121227|1594_1  35 HVVWDLDSTIXCSicpfeK---AQlltlNKHSSCYFDHTD-DdfdyvpGEPNTRTCWRPAARGVIRLLSYFATQHIYTAAQXTYTETVLNELDPNRTLFASVIHRDTQHFNGRQrsplRGKDLTFLfgddESSLRRVVFFDDRLYNFEPQPSNGVHVRPYNEDA 194
                 5899********9885541...332332222233333333.2477777455567899************************************************987775444224467****983333457***************************9986 PP

>> TIGR02250  FCP1_euk: FCP1-like phosphatase, phosphatase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.0   0.0   6.5e-14   8.9e-11       7     154 ..      34     191 ..      28     192 .. 0.81

  Alignments for each domain:
  == domain 1    score: 40.0 bits;  conditional E-value: 6.5e-14
   TIGR02250   7 LvLvlDlDqtlihttkeselseeek.kkkeekeseklkdlkkfkleekleylvklRPfvkeflkkvsklyelhvytmgtraYakeiakllDPekklFgdrilsrdest.......saktKsLkkllpadesa...vviiDdredvWkksk.nLikveryk 154
                 L++v DlD t+  + +  e ++  + +k+++   +++ d + +    + ++ +  RP  +  ++ +s + + h+yt ++ +Y++++++ lDP+++lF + ++ rd ++         + K L+ l++ des+   vv  Ddr   ++ ++ n ++v++y+
  MMETSP1137-20121227|1594_1  34 LHVVWDLDSTIXCSICPFEKAQLLTlNKHSSCYFDHTDDDFDYVPG-EPNTRTCWRPAARGVIRLLSYFATQHIYTAAQXTYTETVLNELDPNRTLFAS-VIHRDTQHfngrqrsPLRGKDLTFLFGDDESSlrrVVFFDDRLYNFEPQPsNGVHVRPYN 191
                 999********99998888777766233444455566777777776.5899999*******************************************86.778877665665553445677******988643449******99999998899*999996 PP

>> TIGR02245  HAD_IIID1: HAD hydrolase, family IIID
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   1.6e-06    0.0022     130     170 ..     165     205 ..     145     212 .. 0.88

  Alignments for each domain:
  == domain 1    score: 15.4 bits;  conditional E-value: 1.6e-06
   TIGR02245 130 kntimfddlrrnfvmnpknGlkikpfkkahanrdtdkellk 170
                 +  + fdd   nf   p nG++++p+++  ++ ++d e+ +
  MMETSP1137-20121227|1594_1 165 RRVVFFDDRLYNFEPQPSNGVHVRPYNEDAVEFGGDVEMAR 205
                 56789***********************9999999988765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (252 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       105  (0.0255973); expected 82.0 (0.02)
Passed bias filter:                       99  (0.0241346); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.24u 0.18s 00:00:00.42 Elapsed: 00:00:00.38
# Mc/sec: 875.30
//
Query:       MMETSP1137-20121227|1595_1  [L=372]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      6e-42  142.0   3.7    7.2e-42  141.8   2.6    1.1  1  TIGR00817 tpt: Tpt phosphate/phosphoenolpyruvate translocator
    1.2e-11   42.4  13.0    2.2e-11   41.5   8.9    1.6  1  TIGR00950 2A78: carboxylate/amino acid/amine transporter
  ------ inclusion threshold ------
      0.011   13.3  11.3       0.03   11.8   0.9    2.5  2  TIGR03340 phn_DUF6: phosphonate utilization associated putative membrane protein


Domain annotation for each model (and alignments):
>> TIGR00817  tpt: Tpt phosphate/phosphoenolpyruvate translocator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  141.8   2.6   5.2e-45   7.2e-42       5     295 ..      77     372 .]      73     372 .] 0.89

  Alignments for each domain:
  == domain 1    score: 141.8 bits;  conditional E-value: 5.2e-45
   TIGR00817   5 llfllwyvlnvyFnivnkkllkl....fhypvlktlvslavgvllellswss.ilkkrlkiskallklllpvaivhtighvtsnvslskvavSfthtikalepifsvvlskfflgrefpltlylsLlpivlGvalasltelsfnllgflsamisniefvarnifsKkiltkk....sldkl.nlyalisililfllspiafiveglklltreflqaiskvnvlklvtvslvaalgifHlyqqvafqllervspltysvgNvlKRvvvIvvSilffetkisflqvlGvilaiaGvflYskvk 295
                  +f+ wy+ n y+ + nk  lk+    +  pv++   ++ +g++++l  w       ++++  + l +++pva + +  h++s +s+++ avSf  ++ka ep+f ++l   + g+++  + +l L+p+++Gv las++el f++++++sa ++n+   +r+   Kk++ +      + ++ n +a+ ++l  ++l p+++i e  ++ +   l+     +v  l  ++l   l  f ly+ +++ ++++ s+ t sv+N+ KRv+vIv  ++ +++ +++++ lG ++ i Gv lYs vk
  MMETSP1137-20121227|1595_1  77 AYFAGWYLGNYYYTLNNKYALKAaggaSGFPVTIGFFQMVIGSIYALYLWVApDARATPNVTPKDLLAIVPVAACAAGAHLSSIMSMNLGAVSFAQIVKASEPAFAALLGVTLYGKTVSQAKWLCLIPVIGGVCLASIKELDFSVAALVSACVANLFAAFRSNENKKLMDTPglktRIGSTgNQFAISTMLGALCLFPFWLIFESSRFGE--XLNL--FKTVPALRNNLLTSGL-YFYLYNELSTLTIKKTSATTQSVANTAKRVIVIVGVAIALGESLEPIKLLGCAIGIGGVLLYSLVK 372
                 68999*********9998888752222678999*************99997626788999999**********************************************99999999999*************************************************9766666444442788888899****************988..3333..2345566666777777.999************************************************************886 PP

>> TIGR00950  2A78: carboxylate/amino acid/amine transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.5   8.9   1.6e-14   2.2e-11      19     264 .]     109     366 ..      94     366 .. 0.77

  Alignments for each domain:
  == domain 1    score: 41.5 bits;  conditional E-value: 1.6e-14
   TIGR00950  19 yfavlrrlifallllLpllrlr.......nslkrllrllllgalqlgvfyvllflavkkltvaiaalllvlaPlyvtllsdllekervrkkkllAavlalaGivlllsdgnlsislaGlllgllsgisfAlgtvlakrlvkkeglel.lqftg...fvvlliGallllpfalllgpnlqalpatslqwlallyL..gligtllayflynkg....lkevdasaasilalleplvallLgl.lilgetlslvqliggalilaavl 264
                   + +  ++++++  L l+ ++       +  k+ll ++ ++a +++   ++ +++++   v++a ++ ++ P++++ll   l  ++v++ k+l ++ ++ G v l s ++l++s+a+l+ + ++++ +A+ +   k+l+ + gl++ +  tg   +++ ++Gal l pf l+++ +      ++  + ++ +L   l+ ++l + lyn      +k+ +a + s+ ++++ +  +++g+ ++lge l++++l+g a+ +++vl
  MMETSP1137-20121227|1595_1 109 T-IGFFQMVIGSIYALYLWVAPdaratpnVTPKDLLAIVPVAA-CAAGAHLSSIMSMNLGAVSFAQIVKASEPAFAALLGVTLYGKTVSQAKWLCLIPVIGG-VCLASIKELDFSVAALVSACVANLFAAFRSNENKKLMDTPGLKTrIGSTGnqfAISTMLGALCLFPFWLIFESSR-FGEXLN-LFKTVPALrnNLLTSGLYFYLYNELstltIKKTSATTQSVANTAKRVI-VIVGVaIALGESLEPIKLLGCAIGIGGVL 366
                 3.45555666777777778888888974433444444444444.44555678899***************************************99999888.999999********************************9998652333332224677899***999977777666.343444.555676774479**********98633336778888888888888776.666661569*************9999987 PP

>> TIGR03340  phn_DUF6: phosphonate utilization associated putative membrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.9   2.2e-05      0.03      75     160 ..     154     238 ..     121     253 .. 0.77
   2 ?    6.9   1.0   0.00071      0.97      94     135 ..     328     370 ..     250     372 .] 0.60

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 2.2e-05
   TIGR03340  75 vYllglaqAYehadvglvYPlaRslPvlvaiaatlllgeeLsalaWlGillivlGllvlglskkaqsrrkalkwalvaalitaiYs 160
                    l+ ++  + + v+++  +  s P + a+ +  l+g+++s+ +Wl ++  v+G + l++ k+ +++ +al  a va l+ a  s
  MMETSP1137-20121227|1595_1 154 GAHLSSIMSMNLGAVSFAQIVKASEPAFAALLGVTLYGKTVSQAKWLCLIP-VIGGVCLASIKELDFSVAALVSACVANLFAAFRS 238
                 3445566778889999998888888**********************8755.5666678889999999999999999999988766 PP

  == domain 2    score: 6.9 bits;  conditional E-value: 0.00071
   TIGR03340  94 PlaRsl.PvlvaiaatlllgeeLsalaWlGillivlGllvlgl 135
                  +a +   v+v++++ + lge+L++++ lG ++ + G+l+ +l
  MMETSP1137-20121227|1595_1 328 SVANTAkRVIVIVGVAIALGESLEPIKLLGCAIGIGGVLLYSL 370
                 444444378999999***********************99765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (372 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       132  (0.0321794); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.34u 0.17s 00:00:00.51 Elapsed: 00:00:00.31
# Mc/sec: 1583.87
//
Query:       MMETSP1137-20121227|1596_1  [L=250]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (250 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        59  (0.0143832); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.13s 00:00:00.33 Elapsed: 00:00:00.33
# Mc/sec: 999.92
//
Query:       MMETSP1137-20121227|1597_1  [L=166]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (166 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       108  (0.0263286); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.13s 00:00:00.30 Elapsed: 00:00:00.32
# Mc/sec: 684.69
//
Query:       MMETSP1137-20121227|1598_1  [L=69]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (69 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        36  (0.00877621); expected 82.0 (0.02)
Passed bias filter:                       34  (0.00828864); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.13s 00:00:00.25 Elapsed: 00:00:00.26
# Mc/sec: 350.28
//
Query:       MMETSP1137-20121227|1600_1  [L=193]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (193 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        45  (0.0109703); expected 82.0 (0.02)
Passed bias filter:                       42  (0.0102389); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.13s 00:00:00.31 Elapsed: 00:00:00.67
# Mc/sec: 380.21
//
Query:       MMETSP1137-20121227|1601_1  [L=685]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (685 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       153  (0.0372989); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.16s 00:00:00.56 Elapsed: 00:00:00.40
# Mc/sec: 2260.31
//
Query:       MMETSP1137-20121227|1602_1  [L=296]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (296 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        83  (0.020234); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.14s 00:00:00.39 Elapsed: 00:00:00.28
# Mc/sec: 1347.20
//
Query:       MMETSP1137-20121227|1603_1  [L=174]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.5e-28   94.5   0.0      8e-28   94.2   0.0    1.0  1  TIGR01735 FGAM_synt: phosphoribosylformylglycinamidine synthase
    0.00059   15.6   0.0    0.00073   15.3   0.0    1.0  1  TIGR01739 tegu_FGAM_synt: herpesvirus tegument protein/v-FGAM-synthase
      0.007   13.6   0.0      0.011   12.9   0.0    1.3  1  TIGR01737 FGAM_synth_I: phosphoribosylformylglycinamidine synthase I


Domain annotation for each model (and alignments):
>> TIGR01735  FGAM_synt: phosphoribosylformylglycinamidine synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.2   0.0   5.8e-31     8e-28     967    1091 ..       7     128 ..       2     134 .. 0.82

  Alignments for each domain:
  == domain 1    score: 94.2 bits;  conditional E-value: 5.8e-31
   TIGR01735  967 eigtetaeaeieikvngetllseklseLrdiWeetsfqlqrLrdnpeCaeeekealkereepglklklsfdvaediaapfinkGvkPkvailreqGvngdiemaaaferaGfeaiDvhmsDllaG 1091
                  +i+te ++ ++   + ++++l +++  Lrd+We tsf+l+ L+ npeC+++e++a+ +r++p l l++s+ ++     ++i+  + P+va++r +G+ngd+emaaaf +aG++++Dv m Dl a 
  MMETSP1137-20121227|1603_1    7 GISTEKKAITVISASSNRVMLAAEMPALRDVWEATSFALEMLQCNPECVKQEQSAMSTRHAPDLALTFSPVSSAP--HATIA-ETAPRVAVIRQEGSNGDREMAAAFFAAGMAPWDVSMYDLAAA 128 
                  334444444444455677889999***************************************998877644433..33333.579************************************875 PP

>> TIGR01739  tegu_FGAM_synt: herpesvirus tegument protein/v-FGAM-synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   5.3e-07   0.00073     845     973 ..       5     130 ..       2     144 .. 0.79

  Alignments for each domain:
  == domain 1    score: 15.3 bits;  conditional E-value: 5.3e-07
   TIGR01739 845 viGrVaeegesstfsvvhns..tkllkesLsslqatWrsfsseelellrseleeke.lhkldyglnevdlgslekglklsplrlvtapderkrVavlllPGqskpesllaaltnaGFdprivsitelkktdl 973
                  iG    ++e++ ++v+++s   ++l + +  l+ +W+ +s    +l++++   k+ + +++ ++    + + + ++   +  +++    + rVav+   G++ +  + aa+  aG  p  vs+  l+  ++
  MMETSP1137-20121227|1603_1   5 RIG---ISTEKKAITVISASsnRVMLAAEMPALRDVWEATSFALEMLQCNPECVKQeQSAMSTRHAPDLALTFSPVSSAPHATIAE---TAPRVAVIRQEGSNGDREMAAAFFAAGMAPWDVSMYDLAAATS 130
                 444...45778888887665114678999**********99998888887766555488998888888888888877777777766...5668*****************************9999988776 PP

>> TIGR01737  FGAM_synth_I: phosphoribosylformylglycinamidine synthase I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.9   0.0   7.9e-06     0.011       2      35 ..      91     124 ..      90     133 .. 0.86

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 7.9e-06
   TIGR01737   2 kvavirfpGtncdrdtvkaleklgveaelvwyed 35 
                 +vavir +G+n dr++++a+  +g+++  v   d
  MMETSP1137-20121227|1603_1  91 RVAVIRQEGSNGDREMAAAFFAAGMAPWDVSMYD 124
                 69**********************9987776555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (174 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        81  (0.0197465); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.21u 0.17s 00:00:00.38 Elapsed: 00:00:00.35
# Mc/sec: 656.17
//
Query:       MMETSP1137-20121227|1604_1  [L=363]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.1e-12   45.6  22.7    2.1e-12   44.6  15.7    1.4  1  TIGR00813 sss: transporter, solute:sodium symporter (SSS) family


Domain annotation for each model (and alignments):
>> TIGR00813  sss: transporter, solute:sodium symporter (SSS) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.6  15.7   5.2e-16   2.1e-12     124     411 .]      11     276 ..       5     276 .. 0.81

  Alignments for each domain:
  == domain 1    score: 44.6 bits;  conditional E-value: 5.2e-16
   TIGR00813 124 lllalitilYtviGGlkAvvwtDtlqavimivgvlilpvvafsevgg.lesvvekakqaaptvvsvddllkleldpltsdlpwgalvfGliivallywcldqvivqRllaaksaksakkgvlisgvlkllpmllavlpGliaralytdvdpalagavqqasdqaypllvvellppglaglflavllaAvlStlssilnsastvfteDlYkkiirkaaekekkivsrgrvavlvaiviaivvaaaqsgqvlqlvqsafgilgapllavfvLglfwkrvnakGAlvgliiG 411
                 l++++it+ Yt +GGl +  +tD lq+v ++v ++i+ + af    g  ++ +e+++   +     dd  k  + +++  l    + ++++++         +++qR+ +a++  +++ +++ s vl++++m l  ++G++a+a+y   +    g +  +   a+p lv   +p++  glf+   +a v St++si   + +v +    + +  k     k+ v+ g++a++ +++i+i +    sgq + +   + ++l a+++ ++ +g fw r+   +Al+g  +G
  MMETSP1137-20121227|1604_1  11 LATSMITLAYTGLGGLPVSLLTDRLQGVGVFVLSIIIAIAAFAYPTGfSDDRWEQVTSTGT----DDDYAKAVYIAVSLILG--VTSANMFHA---------GYWQRIWSAENDRQVRIAIIGSSVLVIIVMSLFGIIGFFAYAIYGT-NLFSYGGFY-VVFLAAPILVRSNVPEVWHGLFIVLGVAMVASTADSIQSGMMAVLSPATEALFGAKLGX-GKMAVNFGVMAAFNVLAIVISL----SGQSVLMLFLLADLLCAAAIVPLFMG-FWRRTHPYAALAGCFTG 276
                 78999************************************98876658999999999888....45555555555544443..589999999.........555*****************************************85.666666664.8999********************99999999999998877777776666655566666.8999999999999888876643....44444445555555555555555577.9************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (363 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       245  (0.059727); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.30u 0.16s 00:00:00.46 Elapsed: 00:00:00.38
# Mc/sec: 1260.84
//
Query:       MMETSP1137-20121227|1605_1  [L=197]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (197 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        73  (0.0177962); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.16s 00:00:00.37 Elapsed: 00:00:00.31
# Mc/sec: 838.77
//
Query:       MMETSP1137-20121227|1607_1  [L=142]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (142 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        52  (0.0126767); expected 82.0 (0.02)
Passed bias filter:                       40  (0.00975134); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.15s 00:00:00.31 Elapsed: 00:00:00.45
# Mc/sec: 416.50
//
Query:       MMETSP1137-20121227|1609_1  [L=332]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (332 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       123  (0.0299854); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.14s 00:00:00.40 Elapsed: 00:00:00.42
# Mc/sec: 1043.34
//
Query:       MMETSP1137-20121227|1610_1  [L=211]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (211 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       151  (0.0368113); expected 82.0 (0.02)
Passed bias filter:                      130  (0.0316919); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.11s 00:00:00.32 Elapsed: 00:00:00.32
# Mc/sec: 870.30
//
Query:       MMETSP1137-20121227|1611_1  [L=632]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.6e-20   69.8   2.8    2.5e-10   36.7   0.1    3.5  3  TIGR02917 PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein
    1.2e-16   58.8   1.9    1.2e-09   36.0   0.1    4.3  4  TIGR02521 type_IV_pilW: type IV pilus biogenesis/stability protein PilW
    8.2e-10   36.4   2.6     0.0077   13.8   0.0    5.4  5  TIGR02552 LcrH_SycD: type III secretion low calcium response chaperone LcrH/SycD
    2.2e-07   27.3   0.5    2.2e-07   27.3   0.4    2.4  3  TIGR03939 PGA_TPR_OMP: poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA
    0.00036   19.0   0.0        1.5    7.2   0.0    4.1  4  TIGR02795 tol_pal_ybgF: tol-pal system protein YbgF


Domain annotation for each model (and alignments):
>> TIGR02917  PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.7   0.1     3e-13   2.5e-10     399     555 ..     101     256 ..      91     260 .. 0.86
   2 !   17.0   0.0   2.8e-07   0.00023     445     510 ..     248     315 ..     239     333 .. 0.89
   3 !   15.8   0.2   6.4e-07   0.00053     472     665 ..     335     546 ..     327     558 .. 0.71

  Alignments for each domain:
  == domain 1    score: 36.7 bits;  conditional E-value: 3e-13
   TIGR02917 399 aktklgiskLaqGdkseaiadLetAvkldpellraellLilsyLrsgefdkalaaakklekkqpdnaslynllgaiylgkkdlakAreafekALkiepdffpAlanLArldlqekniddAkqrfekvlaidpknlkallaLaelaarkgneeeaval 555
                 ++ + +++ L +G+   a+a + + +kl+p  +r+   +   y r ++f+ a  ++++ +k  p+na l++ l+  +  +k + +Ar   + AL+++p+ ++A  +  r++++ ++ + A   f++ lai+p+  ++  aL  l+   g+ ++a a 
  MMETSP1137-20121227|1611_1 101 VEYEHAVLLLKTGRYDGALALFGKLSKLNPGDGRVWQRMMAIYKRLRRFQSAERVIRAGLKACPGNAMLQQALADLLRERKRYTEARTHXRRALQLDPQLLSAYDSWGRMEAALGRHKLAESLFQRGLAIKPT-TRLYHALGVLQDTVGQADAARAT 256
                 5667899999999999999999999999999999988888889999999999999999999999999999999999999999999999999999999999999999999999999999999999999999997.46777777777776777666655 PP

  == domain 2    score: 17.0 bits;  conditional E-value: 2.8e-07
   TIGR02917 445 gefdkalaaakklek..kqpdnaslynllgaiylgkkdlakAreafekALkiepdffpAlanLArldl 510
                 g++d a+a++++ +    ++dn++l + lg + +  +++ kAre f +A   +p f  A  +L rl++
  MMETSP1137-20121227|1611_1 248 GQADAARATLRAGLDlpGEQDNPQLLHALGMVEVRAGNAHKARERFMAAIGANPSFTMAYLSLGRLEE 315
                 78999999999987544899*******************************************99875 PP

  == domain 3    score: 15.8 bits;  conditional E-value: 6.4e-07
   TIGR02917 472 gaiylgkkdlakAreafekALkiepdffpAlanLArldlqekniddAkqrfekvlaidpknlkallaLaelaarkgneeeavallekaaek....dpkelep.....alaLaqyyl.......skgelkkalaileeaadlapdspellellgraql..aakdlkkavesfkkllelqpdsalalllladvyavaknkakAltslkkaLelk 665
                 +     ++  a Are ++ A  + p+++  l++  +l  +e ++d+A+  f++vla         +  a+l+ar+gn e+a al+ek  e+     p+   +     al+L + +l       ++ge  +a a+ ++a  l +++p++++   ra    ++++l+  ++ +  +++++  +  + +  a+v +   ++++A+ +++ +L l+
  MMETSP1137-20121227|1611_1 335 ARMETLRGRVAAARELYKRASGLFPEDAHLLIEWGKLXSEERDVDAARSLFSRVLALRTPPTYGYQCAAALEAREGNAEAARALYEKGTERalarLPTSARGegdgvALSLTKLLLswavfewRQGEIGRARALFKKAEMLTAATPSAWLFQWRARFegENGQLALSRHYYARAANVDRTESSIWKMWAEVESEIGDAERAALYARLSLRLE 546
                 556667888999********************************************999999999999****************99865541111333222111112344444333111122357888888888888888888888877665555441145555555566777777777777777888888888888888887777777665 PP

>> TIGR02521  type_IV_pilW: type IV pilus biogenesis/stability protein PilW
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.8   0.0    0.0024         2      31     101 ..      99     169 ..      82     187 .. 0.70
   2 !   36.0   0.1   1.4e-12   1.2e-09      43     179 ..     179     314 ..     166     339 .. 0.92
   3 !    7.9   0.0   0.00052      0.43     148     225 ..     341     418 ..     326     426 .. 0.84
   4 !    6.5   0.1    0.0014       1.1     146     226 ..     457     539 ..     447     549 .. 0.62

  Alignments for each domain:
  == domain 1    score: 5.8 bits;  conditional E-value: 0.0024
   TIGR02521  31 akirvqLaleYleqgdlekAkenlekAleldpkdadanlalAlyyqqlgelekAeesfrkAltlkpnngdv 101
                  ++  + a+  l+ g ++ A +   k  +l+p d ++++ +  +y++l++ + Ae+  r +l+  p n+ +
  MMETSP1137-20121227|1611_1  99 FEVEYEHAVLLLKTGRYDGALALFGKLSKLNPGDGRVWQRMMAIYKRLRRFQSAERVIRAGLKACPGNAML 169
                 55666667777777777777777777778888888888888888888888888888888888887777655 PP

  == domain 2    score: 36.0 bits;  conditional E-value: 1.4e-12
   TIGR02521  43 eqgdlekAkenlekAleldpkdadanlalAlyyqqlgelekAeesfrkAltlkpnngdvlNNYGtFLcqqkkyeeAeqqfeaAiedpkYeqparsyeNaglcalkagdtekaekyltralkidpkrpesllelaelk 179
                 e++ +++A+     Al+ldp+  +a+++ + +   lg+++ Ae  f+++l++kp + +++   G+     ++++ A + ++a +  p  +   + +  +g++  +ag+++ka++ +  a+ ++p+   + l+l +l+
  MMETSP1137-20121227|1611_1 179 ERKRYTEARTHXRRALQLDPQLLSAYDSWGRMEAALGRHKLAESLFQRGLAIKPTT-RLYHALGVLQDTVGQADAARATLRAGLDLPGEQDNPQLLHALGMVEVRAGNAHKARERFMAAIGANPSFTMAYLSLGRLE 314
                 677899************************************************75.677899**999999************************************************************999776 PP

  == domain 3    score: 7.9 bits;  conditional E-value: 0.00052
   TIGR02521 148 agdtekaekyltralkidpkrpesllelaelklkkgqyaeAralleryqqtveqtaesLwLgiriakalgdaaaakey 225
                  g+++ a++  +ra  + p+ ++ l e  +l ++++++ +Ar+l+ r+ ++  +       ++ ++++ g+a+aa+++
  MMETSP1137-20121227|1611_1 341 RGRVAAARELYKRASGLFPEDAHLLIEWGKLXSEERDVDAARSLFSRVLALRTPPTYGYQCAAALEAREGNAEAARAL 418
                 688999999999999999999999999999999999999999999999999888888888888888888888877664 PP

  == domain 4    score: 6.5 bits;  conditional E-value: 0.0014
   TIGR02521 146 lkagdtekaekyltralkidpkrpeslle..laelklkkgqyaeAralleryqqtveqtaesLwLgiriakalgdaaaakeye 226
                  ++g+  +a++ +++a  + +  p + l    a+ + ++gq+a  r++++r +++   +    ++ ++++   gda+ a+ y+
  MMETSP1137-20121227|1611_1 457 WRQGEIGRARALFKKAEMLTAATPSAWLFqwRARFEGENGQLALSRHYYARAANVDRTESSIWKMWAEVESEIGDAERAALYA 539
                 46666777777777777777776666553114555556677777777777766655555544555566777777777666664 PP

>> TIGR02552  LcrH_SycD: type III secretion low calcium response chaperone LcrH/SycD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.0   9.3e-06    0.0077      13      72 ..      94     153 ..      88     175 .. 0.89
   2 !    8.0   0.0    0.0006      0.49      57     123 ..     172     238 ..     161     241 .. 0.88
   3 !    8.7   0.0   0.00036      0.29       9     114 ..     192     298 ..     188     310 .. 0.88
   4 ?    1.4   0.0     0.064        53      55     114 ..     331     390 ..     327     398 .. 0.81
   5 !    4.2   0.1    0.0086         7      28     106 ..     456     536 ..     449     560 .. 0.66

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 9.3e-06
   TIGR02552  13 ldeeqleaiYalAYnlyqqgkyeeAeklFqlLaaldpteakywlgLaaclqalkeyeeAi 72 
                 +d e+ e  Y++A  l ++g+y+ A+ lF  L  l+p + + w ++ a +++l +++ A 
  MMETSP1137-20121227|1611_1  94 IDLEAFEVEYEHAVLLLKTGRYDGALALFGKLSKLNPGDGRVWQRMMAIYKRLRRFQSAE 153
                 566788889***************************************999999999986 PP

  == domain 2    score: 8.0 bits;  conditional E-value: 0.0006
   TIGR02552  57 gLaaclqalkeyeeAiaaYalaaaldlddprpvyhaaecllalgekeeAlkaLklaieiaeekeeys 123
                 +La  l + k+y+eA+    +a++ld++  +++   +    alg+ + A++ +++ ++i+   + y+
  MMETSP1137-20121227|1611_1 172 ALADLLRERKRYTEARTHXRRALQLDPQLLSAYDSWGRMEAALGRHKLAESLFQRGLAIKPTTRLYH 238
                 899999999********************************************99999887766655 PP

  == domain 3    score: 8.7 bits;  conditional E-value: 0.00036
   TIGR02552   9 sllgldeeqleaiYalAYnlyqqgkyeeAeklFqlLaaldpteakywlgLaaclqalkeyeeAiaaYalaaald..lddprpvyhaaecllalgekeeAlkaLklaie 114
                  +l+ld++ l a  + +  + + g+ + Ae lFq   a+ pt   y+ +L++     ++ + A+a+  + + l    d+p+ + +++ + +  g+  +A++ + +ai 
  MMETSP1137-20121227|1611_1 192 RALQLDPQLLSAYDSWGRMEAALGRHKLAESLFQRGLAIKPTTRLYH-ALGVLQDTVGQADAARATLRAGLDLPgeQDNPQLLHALGMVEVRAGNAHKARERFMAAIG 298
                 567777877777777888888889999*******99999**999887.8**********************99766999***********************999985 PP

  == domain 4    score: 1.4 bits;  conditional E-value: 0.064
   TIGR02552  55 wlgLaaclqalkeyeeAiaaYalaaaldlddprpvyhaaecllalgekeeAlkaLklaie 114
                 w ++a      ++ + A++ Y++a  l ++d+  + + ++   +  +   A++ + ++++
  MMETSP1137-20121227|1611_1 331 WQSWARMETLRGRVAAARELYKRASGLFPEDAHLLIEWGKLXSEERDVDAARSLFSRVLA 390
                 78889999999999999999*999999999998888888777777777777777777766 PP

  == domain 5    score: 4.2 bits;  conditional E-value: 0.0086
   TIGR02552  28 lyqqgkyeeAeklFq...lLaaldpteakywlgLaaclqalkeyeeAiaaYalaaaldlddprpvyhaaecllalgekeeAl 106
                 ++ qg+  +A+ lF+   +L+a+ p  + +  + a    + ++ +  ++ Ya+aa +d+ + +     ae+  ++g+ e+A 
  MMETSP1137-20121227|1611_1 456 EWRQGEIGRARALFKkaeMLTAATPSAWLFQWR-ARFEGENGQLALSRHYYARAANVDRTESSIWKMWAEVESEIGDAERAA 536
                 577888888888886222344444444433333.445555566666678888888888888888888888888888888876 PP

>> TIGR03939  PGA_TPR_OMP: poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.3   0.4   2.7e-10   2.2e-07      61     252 ..     107     296 ..      87     312 .. 0.92
   2 !    4.5   0.3    0.0021       1.7     402     458 ..     335     391 ..     326     418 .. 0.59
   3 ?   -4.1   0.5      0.82   6.7e+02     435     483 ..     459     509 ..     452     540 .. 0.67

  Alignments for each domain:
  == domain 1    score: 27.3 bits;  conditional E-value: 2.7e-10
   TIGR03939  61 avlsWagedkevidvyery.slvglparelealAkAaRnekqwdkAlelyrkllqrdPknpdlllGlaltladagkdeeAlkalkelkerfpsdaerlealaYvlraaedsldalaaiqqalrlePdnkellkelveilt.rlgapalaarlakqhpelftdeekrrleldqaaelvrlgekasrsekerfala 252
                 ++l+  g+ + +++++ ++ +l++   r+++ +   + +++++++A+ + r  l+  P n+ l+ +la  l + +++ eA  + +++ + +p+  + +  ++++ +a++++  a +  q+ l+ +P+++  l+  + +l+  +g++ +a + +++  +l  ++++ +l +      vr g++ +    erf  a
  MMETSP1137-20121227|1611_1 107 VLLLKTGRYDGALALFGKLsKLNPGDGRVWQRMMAIYKRLRRFQSAERVIRAGLKACPGNAMLQQALADLLRERKRYTEARTHXRRALQLDPQLLSAYDSWGRMEAALGRHKLAESLFQRGLAIKPTTR--LYHALGVLQdTVGQADAARATLRAGLDLPGEQDNPQLLHALGMVEVRAGNAHKAR--ERFMAA 296
                 67888999999999999999999999999****9*********************************************************************************************98..77788888889999999999999999*********************99998885..488765 PP

  == domain 2    score: 4.5 bits;  conditional E-value: 0.0021
   TIGR03939 402 vlllaysgdlseAekkleellatAPgNqslrlalaeveraRgwprrAeqllkkaesl 458
                 + ++  +g++++A +  ++++   P ++ l ++++++ +     ++A +l+ ++ +l
  MMETSP1137-20121227|1611_1 335 ARMETLRGRVAAARELYKRASGLFPEDAHLLIEWGKLXSEERDVDAARSLFSRVLAL 391
                 344445555555555555555555666666666666665555556666666555555 PP

  == domain 3    score: -4.1 bits;  conditional E-value: 0.82
   TIGR03939 435 laeveraRgwprrAeqllkkaesl..epdslsaergqaetaldlqewrqae 483
                 ++e+ raR  +++Ae l  ++ s    + ++  e + +++al+++ +++a 
  MMETSP1137-20121227|1611_1 459 QGEIGRARALFKKAEMLTAATPSAwlFQWRARFEGENGQLALSRHYYARAA 509
                 667777777777777666655544455555666666666666666555554 PP

>> TIGR02795  tol_pal_ybgF: tol-pal system protein YbgF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.2   0.0    0.0019       1.5       4      34 ..     101     131 ..      99     135 .. 0.89
   2 ?    0.6   0.0      0.22   1.8e+02      17      78 ..     148     206 ..     137     226 .. 0.70
   3 !    4.9   0.0    0.0098         8      45     101 ..     240     295 ..     215     309 .. 0.81
   4 ?   -1.2   0.0      0.76   6.3e+02      76     103 ..     362     389 ..     339     394 .. 0.73

  Alignments for each domain:
  == domain 1    score: 7.2 bits;  conditional E-value: 0.0019
   TIGR02795   4 aeykaallvlkegdYakAeqaFkaFlkkYPk 34 
                  ey++a l+lk g+Y+ A + F +  k +P 
  MMETSP1137-20121227|1611_1 101 VEYEHAVLLLKTGRYDGALALFGKLSKLNPG 131
                 5899******************999888886 PP

  == domain 2    score: 0.6 bits;  conditional E-value: 0.22
   TIGR02795  17 dYakAeqaFkaFlkkYPkstlapnAqYwlGealyakkkykdAakaflevvkkypksekapda 78 
                 ++++Ae+  +a lk  P +++  +A   l+ +l ++k y++A ++ + +++ +p+   a d+
  MMETSP1137-20121227|1611_1 148 RFQSAERVIRAGLKACPGNAMLQQA---LADLLRERKRYTEARTHXRRALQLDPQLLSAYDS 206
                 6777777777777777777777776...7888888888888888888888777776666555 PP

  == domain 3    score: 4.9 bits;  conditional E-value: 0.0098
   TIGR02795  45 lGealyakkkykdAakaflevvkkypksekapdallklgeslqelgqkekAkktlqe 101
                 lG ++ + ++ ++A ++ ++ +   p ++  p+ l  lg++ ++ g+++kA++ +  
  MMETSP1137-20121227|1611_1 240 LGVLQDTVGQADAARATLRAGLD-LPGEQDNPQLLHALGMVEVRAGNAHKARERFMA 295
                 56666666777777777777666.999999*********************998865 PP

  == domain 4    score: -1.2 bits;  conditional E-value: 0.76
   TIGR02795  76 pdallklgeslqelgqkekAkktlqevi 103
                 +  l++ g++ +e ++ ++A++ +++v 
  MMETSP1137-20121227|1611_1 362 AHLLIEWGKLXSEERDVDAARSLFSRVL 389
                 4567788888888888888888888775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (632 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       116  (0.0282789); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.60u 0.16s 00:00:00.76 Elapsed: 00:00:00.84
# Mc/sec: 993.06
//
Query:       MMETSP1137-20121227|1612_1  [L=73]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (73 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        51  (0.012433); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.19s 00:00:00.34 Elapsed: 00:00:00.39
# Mc/sec: 247.06
//
Query:       MMETSP1137-20121227|1613_1  [L=472]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (472 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        87  (0.0212092); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.14s 00:00:00.45 Elapsed: 00:00:00.44
# Mc/sec: 1415.88
//
Query:       MMETSP1137-20121227|1614_1  [L=227]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (227 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        59  (0.0143832); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.14s 00:00:00.33 Elapsed: 00:00:00.45
# Mc/sec: 665.81
//
Query:       MMETSP1137-20121227|1615_1  [L=71]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.2e-10   38.2   0.4    2.8e-10   37.9   0.3    1.1  1  TIGR00012 L29: ribosomal protein L29


Domain annotation for each model (and alignments):
>> TIGR00012  L29: ribosomal protein L29
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.9   0.3   6.8e-14   2.8e-10       1      39 [.      10      49 ..      10      52 .. 0.95

  Alignments for each domain:
  == domain 1    score: 37.9 bits;  conditional E-value: 6.8e-14
   TIGR00012  1 elrekskeELakklkelKkeLfeLRfqkatgqle.kphrI 39
                elr k+k++L+k+l+e K eL++LR+ k+tg+++ k++++
  MMETSP1137-20121227|1615_1 10 ELRSKNKQDLLKQLDEMKSELASLRVAKVTGGAAsKLSKM 49
                8*********************************999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (71 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       199  (0.0485129); expected 82.0 (0.02)
Passed bias filter:                      171  (0.041687); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.12u 0.19s 00:00:00.31 Elapsed: 00:00:00.33
# Mc/sec: 283.98
//
Query:       MMETSP1137-20121227|1616_1  [L=115]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (115 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        41  (0.00999512); expected 82.0 (0.02)
Passed bias filter:                       38  (0.00926377); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.25
# Mc/sec: 607.15
//
Query:       MMETSP1137-20121227|1617_1  [L=186]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (186 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        44  (0.0107265); expected 82.0 (0.02)
Passed bias filter:                       41  (0.00999512); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.19s 00:00:00.34 Elapsed: 00:00:00.55
# Mc/sec: 446.36
//
Query:       MMETSP1137-20121227|1618_1  [L=307]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (307 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        86  (0.0209654); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.20s 00:00:00.40 Elapsed: 00:00:00.70
# Mc/sec: 578.87
//
Query:       MMETSP1137-20121227|1620_1  [L=70]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        35  (0.00853242); expected 82.0 (0.02)
Passed bias filter:                       34  (0.00828864); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.12s 00:00:00.26 Elapsed: 00:00:00.26
# Mc/sec: 355.36
//
Query:       MMETSP1137-20121227|1621_1  [L=199]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (199 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        74  (0.01804); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.18s 00:00:00.37 Elapsed: 00:00:00.31
# Mc/sec: 847.28
//
Query:       MMETSP1137-20121227|1622_1  [L=592]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (592 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       174  (0.0424183); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.15s 00:00:00.56 Elapsed: 00:00:00.54
# Mc/sec: 1446.99
//
Query:       MMETSP1137-20121227|1623_1  [L=287]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (287 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        71  (0.0173086); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.18s 00:00:00.42 Elapsed: 00:00:00.41
# Mc/sec: 923.92
//
Query:       MMETSP1137-20121227|1624_1  [L=64]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.14s 00:00:00.26 Elapsed: 00:00:00.35
# Mc/sec: 241.35
//
Query:       MMETSP1137-20121227|1625_1  [L=162]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (162 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       186  (0.0453437); expected 82.0 (0.02)
Passed bias filter:                      117  (0.0285227); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.15s 00:00:00.32 Elapsed: 00:00:00.36
# Mc/sec: 593.95
//
Query:       MMETSP1137-20121227|1626_1  [L=92]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (92 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        60  (0.014627); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.32
# Mc/sec: 379.47
//
Query:       MMETSP1137-20121227|1627_1  [L=351]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (351 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       106  (0.0258411); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.18s 00:00:00.44 Elapsed: 00:00:00.37
# Mc/sec: 1252.11
//
Query:       MMETSP1137-20121227|1628_1  [L=201]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.011   13.1   0.0      0.016   12.6   0.0    1.1  1  TIGR02846 spore_sigmaK: RNA polymerase sigma-K factor


Domain annotation for each model (and alignments):
>> TIGR02846  spore_sigmaK: RNA polymerase sigma-K factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   3.8e-06     0.016      77     106 ..      35      64 ..      25      81 .. 0.90

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 3.8e-06
   TIGR02846  77 dlisiGtiGlikaidsfdtekGtklatyaa 106
                   is Gti l  aid  +++kG +lat a+
  MMETSP1137-20121227|1628_1  35 AGISSGTIRLEVAIDQMSASKGSHLATIAS 64 
                 569************************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (201 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       172  (0.0419308); expected 82.0 (0.02)
Passed bias filter:                      118  (0.0287665); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.20u 0.15s 00:00:00.35 Elapsed: 00:00:00.37
# Mc/sec: 717.02
//
Query:       MMETSP1137-20121227|1629_1  [L=502]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (502 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        96  (0.0234032); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.17s 00:00:00.49 Elapsed: 00:00:00.49
# Mc/sec: 1352.21
//
Query:       MMETSP1137-20121227|1630_1  [L=365]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (365 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       100  (0.0243784); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.18s 00:00:00.47 Elapsed: 00:00:00.34
# Mc/sec: 1416.94
//
Query:       MMETSP1137-20121227|1632_1  [L=562]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (562 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       216  (0.0526572); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.16s 00:00:00.53 Elapsed: 00:00:00.46
# Mc/sec: 1612.56
//
Query:       MMETSP1137-20121227|1633_1  [L=931]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (931 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       158  (0.0385178); expected 82.0 (0.02)
Passed bias filter:                       35  (0.00853242); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.52u 0.17s 00:00:00.69 Elapsed: 00:00:00.97
# Mc/sec: 1266.82
//
Query:       MMETSP1137-20121227|1634_1  [L=134]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.023   10.2  15.4      0.028    9.9  10.6    1.1  1  TIGR02169 SMC_prok_A: chromosome segregation protein SMC
      0.028    9.9  17.6      0.033    9.7  12.2    1.0  1  TIGR02168 SMC_prok_B: chromosome segregation protein SMC
      0.029   11.4   4.8      0.036   11.1   3.3    1.2  1  TIGR01533 lipo_e_P4: 5'-nucleotidase, lipoprotein e(P4) family
       0.11   10.4  12.9        0.1   10.6   1.8    2.5  2  TIGR00293 TIGR00293: prefoldin, alpha subunit
        0.2    9.1   7.5       0.21    9.0   5.2    1.0  1  TIGR03363 VI_chp_8: type VI secretion-associated protein, ImpA family
        0.7    8.0   9.4        3.8    5.6   0.3    2.7  2  TIGR03930 WXG100_ESAT6: WXG100 family type VII secretion target
        1.9    5.2  14.7        2.5    4.8  10.2    1.1  1  TIGR01843 type_I_hlyD: type I secretion membrane fusion protein, HlyD family
          2    7.3   9.8        1.4    7.8   1.2    2.1  2  TIGR03021 pilP_fam: type IV pilus biogenesis protein PilP
        3.3    3.4   9.3        3.6    3.2   6.5    1.0  1  TIGR00422 valS: valine--tRNA ligase
        7.1    2.7  15.7         15    1.7  10.9    1.5  1  TIGR03185 DNA_S_dndD: DNA sulfur modification protein DndD


Domain annotation for each model (and alignments):
>> TIGR02169  SMC_prok_A: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9  10.6   6.7e-05     0.028     682     899 ..       8     109 ..       2     123 .. 0.30

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 6.7e-05
   TIGR02169 682 erleeLereleslqselrriekrldelsskls..daekkieeiekeleqleeeeeklkerleeleeklseleeeleekkeelkeleaeieeleeklaklkealedleaelseekieeieeelekleeevsriearleeieaelnklelekelleeeiqelqeeieeleeqkkeiekeieelkakleeleeeleeleaavreLeeelkdLkkereeleael 899
                  +++++e +++++ ++lr+i+++ +e+++k++  +a  +i + +++++ +    +  +++++e e +l++ + +  +k++el++l+++  + + +l++l+                                                                                                                     +  
  MMETSP1137-20121227|1634_1   8 SEIKKIEWKRKQVNEKLRKIQQETNEVREKMHmeRAAGRIAAEQSKMDFV-TTVASYQKQAHEAELQLQARKLAAVAKEAELAKLKERYMQVRTELQELR---------------------------------------------------------------------------------------------------------------------STS 109
                 23333333333333333333333333333322001111121112111111.1122222222233333333333333333333333333333333333333.....................................................................................................................222 PP

>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7  12.2   8.1e-05     0.033     734     841 ..       7     115 ..       2     123 .. 0.49

  Alignments for each domain:
  == domain 1    score: 9.7 bits;  conditional E-value: 8.1e-05
   TIGR02168 734 kkelerlekeveqleerlaqlekeleeleeereeleeelee.aeeelkeaeeeieeleaeieqlkeelkalrealseleaeltelkeeaaekeerleslekeiaaleke 841
                 ++e++++e + +q++e+l+++++e +e++e+++ ++++    ae+ +    +++++ ++++ +++ +l+a + a  ++eael +lke++ +++++l++l+++  ++++ 
  MMETSP1137-20121227|1634_1   7 SSEIKKIEWKRKQVNEKLRKIQQETNEVREKMHMERAAGRIaAEQSKMDFVTTVASYQKQAHEAELQLQARKLAAVAKEAELAKLKERYMQVRTELQELRSTSGQQKTA 115
                 4455555555555555555555555555555544433332202233344445555555555555555555555555555555555555555555555555555544444 PP

>> TIGR01533  lipo_e_P4: 5'-nucleotidase, lipoprotein e(P4) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   3.3   8.8e-05     0.036      40      91 ..      43     104 ..       7     115 .. 0.80

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 8.8e-05
   TIGR01533  40 t..........kekvlavawyqrsaEykALalqaYnlAkerldeelkkekdkkkaivlDlDE 91 
                             + v++va yq+ a    L+lqa +lA ++ ++el+k k++   + ++l E
  MMETSP1137-20121227|1634_1  43 AagriaaeqskMDFVTTVASYQKQAHEAELQLQARKLAAVAKEAELAKLKERYMQVRTELQE 104
                 24444444445899************************************999998888876 PP

>> TIGR00293  TIGR00293: prefoldin, alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   1.8   0.00025       0.1      92     124 ..       7      39 ..       2      44 .. 0.89
   2 ?    5.0   1.6     0.013       5.4     106     126 ..      85     105 ..      58     108 .. 0.81

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 0.00025
   TIGR00293  92 kkkieelekaieklqeelqelaseaqeieqelq 124
                  ++i+++e ++++++e+l+++++e +e+++++ 
  MMETSP1137-20121227|1634_1   7 SSEIKKIEWKRKQVNEKLRKIQQETNEVREKMH 39 
                 6789*************************9986 PP

  == domain 2    score: 5.0 bits;  conditional E-value: 0.013
   TIGR00293 106 qeelqelaseaqeieqelqqk 126
                 ++el++l+++++++++elq++
  MMETSP1137-20121227|1634_1  85 EAELAKLKERYMQVRTELQEL 105
                 688999999999999999986 PP

>> TIGR03363  VI_chp_8: type VI secretion-associated protein, ImpA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   5.2    0.0005      0.21     143     269 ..       3     126 ..       1     134 [] 0.81

  Alignments for each domain:
  == domain 1    score: 9.0 bits;  conditional E-value: 0.0005
   TIGR03363 143 tddesgafslldyeraqvenlerkdpeeakaaieegklseeeleealldtskdflqakaealeaalealqalealvderlGsaapslsplrkaLqallrlverlakdkgleaeeapaaaadaaedee 269
                 t+++s ++  ++++r qv++  rk ++e ++  e+ +++++    a+ ++++df+++ a+  ++a ea  +l+a+  +++ ++a +l++l+++  ++++ +++l    g++++  p+ +   +e+  
  MMETSP1137-20121227|1634_1   3 TKSHSSEIKKIEWKRKQVNEKLRKIQQETNEVREKMHMERAAGRIAAEQSKMDFVTTVASYQKQAHEAELQLQARKLAAVAKEA-ELAKLKERYMQVRTELQELRSTSGQQKTAMPTSNT--SEPPP 126
                 47788899999******66666666666666679*****************************************999999865.89*****************9999966555554444..44333 PP

>> TIGR03930  WXG100_ESAT6: WXG100 family type VII secretion target
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   0.3    0.0094       3.8      57      81 ..      14      38 ..       4      45 .. 0.78
   2 ?    5.4   2.5     0.011       4.4      45      81 ..      80     116 ..      39     123 .. 0.82

  Alignments for each domain:
  == domain 1    score: 5.6 bits;  conditional E-value: 0.0094
   TIGR03930 57 kpaaerlneaLqeiseelrqaakkf 81
                + + +++ne+L +i++e+++  +k+
  MMETSP1137-20121227|1634_1 14 EWKRKQVNEKLRKIQQETNEVREKM 38
                5556789999999999999988887 PP

  == domain 2    score: 5.4 bits;  conditional E-value: 0.011
   TIGR03930  45 AaqafdaefaewkpaaerlneaLqeiseelrqaakkf 81 
                 Aa a +ae a++k+ + +++++Lqe++++  q ++++
  MMETSP1137-20121227|1634_1  80 AAVAKEAELAKLKERYMQVRTELQELRSTSGQQKTAM 116
                 899999*********************9999998887 PP

>> TIGR01843  type_I_hlyD: type I secretion membrane fusion protein, HlyD family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8  10.2     0.006       2.5     139     239 ..       4     109 ..       2     122 .. 0.74

  Alignments for each domain:
  == domain 1    score: 4.8 bits;  conditional E-value: 0.006
   TIGR01843 139 salraqlesleaqikqleaeleglqaqlqalrqqleliseelealrkLkekglvsrlelLelereraelqgelae.....leaeleklkaeldeleeklqeleqkf 239
                 ++++++++++e ++kq +++l+++q++++++r+++++     +++ +  +  +v  ++  +++  +aelq + ++     +eael+klk+ + +++ +lqel+++ 
  MMETSP1137-20121227|1634_1   4 KSHSSEIKKIEWKRKQVNEKLRKIQQETNEVREKMHMERAAGRIAAEQSKMDFVTTVASYQKQAHEAELQLQARKlaavaKEAELAKLKERYMQVRTELQELRSTS 109
                 5788999999999999999999999999999999999988888888888888888888777777777777665541112256677777777777777777776654 PP

>> TIGR03021  pilP_fam: type IV pilus biogenesis protein PilP
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   1.3     0.046        19       4      52 ..      21      62 ..      12      76 .. 0.70
   2 ?    7.8   1.2    0.0035       1.4       3      56 ..      75     128 ..      73     134 .] 0.75

  Alignments for each domain:
  == domain 1    score: 4.2 bits;  conditional E-value: 0.046
   TIGR03021  4 vgeLealqsetalleAklarakakkeleeaeekgsnaepgapftssvps 52
                +++L+++q+et  ++ k+  ++a   ++  + k++       f++ v+s
  MMETSP1137-20121227|1634_1 21 NEKLRKIQQETNEVREKMHMERAAGRIAAEQSKMD-------FVTTVAS 62
                56789999999999999999998888886555444.......4444443 PP

  == domain 2    score: 7.8 bits;  conditional E-value: 0.0035
   TIGR03021   3 tvgeLealqsetalleAklarakakkeleeaeekgsnaepgapftssvpsvalt 56 
                 ++ +L+a+ +e  l + k +  +++ el+e++ ++ ++++++p++  +++ + +
  MMETSP1137-20121227|1634_1  75 QARKLAAVAKEAELAKLKERYMQVRTELQELRSTSGQQKTAMPTSNTSEPPPHG 128
                 78899************************9888777556666655555544443 PP

>> TIGR00422  valS: valine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   6.5    0.0087       3.6     753     849 ..      12     108 ..       2     122 .. 0.77

  Alignments for each domain:
  == domain 1    score: 3.2 bits;  conditional E-value: 0.0087
   TIGR00422 753 evllkleeaeeeaerlkksaedlkklikleevevvsekeeeeeavakvvpevevlipvkelenkakelaklqkelekekkekeriekkleneafvkk 849
                 ++  k ++ +e+ ++++++++++++ +++e+     ++e+ ++  ++ v + +++++ +el+ +a++la ++ke+e  k +++ ++ ++e ++ + +
  MMETSP1137-20121227|1634_1  12 KIEWKRKQVNEKLRKIQQETNEVREKMHMERAAGRIAAEQSKMDFVTTVASYQKQAHEAELQLQARKLAAVAKEAELAKLKERYMQVRTELQELRST 108
                 455566667788899999************99999999998899999999999999989***************99777776666665555554444 PP

>> TIGR03185  DNA_S_dndD: DNA sulfur modification protein DndD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7  10.9     0.036        15     372     476 ..       7     113 ..       1     123 [. 0.64

  Alignments for each domain:
  == domain 1    score: 1.7 bits;  conditional E-value: 0.036
   TIGR03185 372 dselaqlevliekvkrekqdaksqL..lkeleeleeelaeldkkietvpdeekvaelleeleeaeeevakseveieektekleelkeaieelrkelkektkqkedae 476
                  se++++e   ++v++++++ +++    +e+ ++e+++  ++ + ++++   +va+ +++ +eae ++++++++   k+++l +lke+  ++r+el+e   ++ +++
  MMETSP1137-20121227|1634_1   7 SSEIKKIEWKRKQVNEKLRKIQQETneVREKMHMERAAGRIAAEQSKMDFVTTVASYQKQAHEAELQLQARKLAAVAKEAELAKLKERYMQVRTELQELRSTSGQQK 113
                 45566666666666555553333220022334445555556666666777777788888888888888888888888889999999999999999977776666554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (134 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       508  (0.123842); expected 82.0 (0.02)
Passed bias filter:                      216  (0.0526572); expected 82.0 (0.02)
Passed Vit filter:                        32  (0.00780107); expected 4.1 (0.001)
Passed Fwd filter:                        10  (0.00243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.29u 0.18s 00:00:00.47 Elapsed: 00:00:00.56
# Mc/sec: 310.29
//
Query:       MMETSP1137-20121227|1635_1  [L=273]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (273 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        40  (0.00975134); expected 82.0 (0.02)
Passed bias filter:                       39  (0.00950756); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.16s 00:00:00.38 Elapsed: 00:00:00.44
# Mc/sec: 818.93
//
Query:       MMETSP1137-20121227|1636_1  [L=179]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (179 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        75  (0.0182838); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.15s 00:00:00.34 Elapsed: 00:00:00.31
# Mc/sec: 762.13
//
Query:       MMETSP1137-20121227|1637_1  [L=423]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.1e-07   27.3   0.0    1.1e-06   24.9   0.0    1.8  1  TIGR03502 lipase_Pla1_cef: extracellular lipase, Pla-1/cef family
     0.0012   16.1   0.1      0.015   12.5   0.0    2.1  2  TIGR03611 RutD: pyrimidine utilization protein D
     0.0018   15.2   0.7      0.017   12.0   0.4    2.2  2  TIGR03056 bchO_mg_che_rel: putative magnesium chelatase accessory protein


Domain annotation for each model (and alignments):
>> TIGR03502  lipase_Pla1_cef: extracellular lipase, Pla-1/cef family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.9   0.0   8.4e-10   1.1e-06     399     564 ..     101     274 ..      93     299 .. 0.56

  Alignments for each domain:
  == domain 1    score: 24.9 bits;  conditional E-value: 8.4e-10
   TIGR03502 399 hlTkynpvPkvkslee...vevllttPnlsviaalraglgletltkPedGWpvvivqHGitgaKenalavagtlaaaGvAtiaiDlPlHGeRsldadadg..vnat........nanvlaYlNLasllvaR.DnlRQsilDlLgLRlsLnllasadlsgssv.......ldaskvsflghSLGgIvg 564
                  +T+y   P  k+l++   +  +++ P +++       + + ++ +  + Wpv i++HG++g  e+   +++++a++Gv ++a+ +   G+  + ++ d+  +            +nv+ +   a  l  R   +R +++ l +L +       a      +       +d s v+++ghS Gg ++
  MMETSP1137-20121227|1637_1 101 AITRYLRRPVTKGLADylkMRKIFFSPLTTA--RHPCEFEA-QPEQCGEKWPVAIFSHGLGGCAEMYSLFSAEMASHGVVVVALEHE-DGSGCFAQTIDSeeLILYkrpsckynRENVVGFR--APFLEQRcGEVRSAVSALQSLAAHGA-SDVA------QlaalcasADLSRVHLVGHSFGGATA 274
                 5777777777887666655666777777222..22222222.34444455**********************************994.6777777666663322221222222222222221..11222221233333333333322222.1222......12223333778888888888887544 PP

>> TIGR03611  RutD: pyrimidine utilization protein D
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.0     0.032        44      11      31 ..     146     166 ..     136     200 .. 0.63
   2 !   12.5   0.0   1.1e-05     0.015      68     115 ..     248     296 ..     222     317 .. 0.71

  Alignments for each domain:
  == domain 1    score: 1.1 bits;  conditional E-value: 0.032
   TIGR03611  11 adaevvvlssGLGGsgsywap 31 
                 ++ +v ++s GLGG ++ +  
  MMETSP1137-20121227|1637_1 146 EKWPVAIFSHGLGGCAEMYSL 166
                 4567889*******9987654 PP

  == domain 2    score: 12.5 bits;  conditional E-value: 1.1e-05
   TIGR03611  68 advlelldaldiekahvvGhalGgliglelalrkpe..rlaklvlinaWs 115
                 a++ +l  ++d++++h+vGh+ Gg  ++ la ++p    +a++ l + W+
  MMETSP1137-20121227|1637_1 248 AQLAALCASADLSRVHLVGHSFGGATAV-LAAQQPIgvPVASVALFDPWA 296
                 345567789***************9987.777777634566667777665 PP

>> TIGR03056  bchO_mg_che_rel: putative magnesium chelatase accessory protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.0     0.044        60      27      61 ..     147     180 ..     133     195 .. 0.73
   2 !   12.0   0.4   1.2e-05     0.017      83     116 ..     248     280 ..     226     294 .. 0.74

  Alignments for each domain:
  == domain 1    score: 0.3 bits;  conditional E-value: 0.044
   TIGR03056  27 aGPvllllhGagasshsfrklvpllaarfrvvapd 61 
                 + Pv+++ hG+g+ +  +  + + +a++  vv+  
  MMETSP1137-20121227|1637_1 147 KWPVAIFSHGLGGCAEMYSLFSAEMASHGVVVV-A 180
                 459***********9999877777776654443.3 PP

  == domain 2    score: 12.0 bits;  conditional E-value: 1.2e-05
   TIGR03056  83 edlakllaaedlsPdaviGhsaGaaialrlaldl 116
                  +la+l+a+ dls   ++Ghs G+a a+  a ++
  MMETSP1137-20121227|1637_1 248 AQLAALCASADLSRVHLVGHSFGGATAVLAA-QQ 280
                 5799********************9887444.33 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (423 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       122  (0.0297416); expected 82.0 (0.02)
Passed bias filter:                      115  (0.0280351); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.35u 0.17s 00:00:00.52 Elapsed: 00:00:00.48
# Mc/sec: 1163.15
//
Query:       MMETSP1137-20121227|1638_1  [L=327]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.7e-71  238.7   0.0    7.4e-70  233.9   0.0    2.0  1  TIGR01574 miaB-methiolase: tRNA-i(6)A37 thiotransferase enzyme MiaB
    5.1e-69  230.9   0.0    7.3e-69  230.4   0.0    1.2  1  TIGR00089 TIGR00089: radical SAM methylthiotransferase, MiaB/RimO family
    6.1e-42  142.1   0.0    1.5e-34  117.8   0.0    2.0  2  TIGR01579 MiaB-like-C: MiaB-like tRNA modifying enzyme
    4.2e-41  139.2   0.0      5e-41  139.0   0.0    1.1  1  TIGR01125 TIGR01125: ribosomal protein S12 methylthiotransferase RimO
    1.7e-33  113.9   0.0    2.3e-32  110.1   0.0    2.0  1  TIGR01578 MiaB-like-B: MiaB-like tRNA modifying enzyme, archaeal-type
    5.7e-10   36.4   0.0    7.7e-10   36.0   0.0    1.2  1  TIGR04013 B12_SAM_MJ_1487: B12-binding domain/radical SAM domain protein, MJ_1487 family
    2.4e-09   34.3   0.0    1.2e-08   32.0   0.0    1.8  1  TIGR04014 B12_SAM_MJ_0865: B12-binding domain/radical SAM domain protein, MJ_0865 family
    0.00045   17.3   0.0     0.0006   16.8   0.0    1.1  1  TIGR03994 rSAM_HemZ: coproporphyrinogen dehydrogenase HemZ
  ------ inclusion threshold ------
       0.01   12.5   0.0      0.014   12.0   0.0    1.1  1  TIGR04107 rSAM_HutW: putative heme utilization radical SAM enzyme HutW


Domain annotation for each model (and alignments):
>> TIGR01574  miaB-methiolase: tRNA-i(6)A37 thiotransferase enzyme MiaB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  233.9   0.0   1.6e-72   7.4e-70     168     415 ..       2     270 ..       1     302 [. 0.88

  Alignments for each domain:
  == domain 1    score: 233.9 bits;  conditional E-value: 1.6e-72
   TIGR01574 168 GeeisrdlddilqevaklaekGvkeitLLGqnvnayr....Gkdf.................egktvsfadLleelavkddierirftsshPkdldddlievlakesklvkllhlPvqsGssevLklmkrsytreeylelvrklkeavPnvslstdiivgfPgeteedfeetldllrevefdsafsfkyskregtpaa.dmkddvpeevkkerLqrlqalvneialkkvkkregktlkvLveeesrnnpeelaGrteknklvnleGkkdl 415
                 G+e+sr++  i qeva+lae+G+ke+tLLGqnvn+y     G                     +    fadL++ela+ +   r rfts+hPkd+ d+l+ v+a+ ++ +++lh P qsGss vL++m+r ytre ylel+++++e +P +s+s+d+i gf gete+  ++tl+l++ v+f++af+f ys re t a  +++ddvpe+vk++rL+ +++  n  a +   ++ g++  +L+++ s+++  e +Grt+ nk v++e k+  
  MMETSP1137-20121227|1638_1   2 GRERSRPFASIAQEVARLAEDGYKEVTLLGQNVNSYAvdlgGA-GaletpalrqgfrskvspVKGDFRFADLMRELAAAHPEVRFRFTSPHPKDFPDELLSVIAEYPNACQSLHXPAQSGSSAVLEAMRRDYTREAYLELIEQVREQLPAASISSDFISGFCGETEDXHQQTLSLIQRVRFEKAFMFAYSLREKTHAHrNLQDDVPEDVKQRRLREVIDVFNRGARQANDEEPGNVHLLLIDGLSKKSEGEWVGRTDCNKRVVFERKPTR 270
                 9***********************************5333321.0232233332222222111223579*********99999*****************************************************************************************************************97479***************************************************************987664 PP

>> TIGR00089  TIGR00089: radical SAM methylthiotransferase, MiaB/RimO family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  230.4   0.0   1.6e-71   7.3e-69     163     409 ..       2     271 ..       1     289 [. 0.96

  Alignments for each domain:
  == domain 1    score: 230.4 bits;  conditional E-value: 1.6e-71
   TIGR00089 163 GrerSrslekileevkelvskgvkEivLlgqnvnaYGkdlegksk......................ladLlkelekiegierirvtslhpkdvtdelieliaeeekvlkflhlplQsgsdeiLkrMrRkytreeyleiveklrakvpdvalstdiIVGFPgEteedFeetldlveevkfdklhvfkYspregtpaa.elkdqvpeevkkeRlerLkelqkeiskeknkkyvGktlevLveeeekkkegelsgrtennklvvvegkeeke 409
                 GrerSr+ ++i +ev++l+++g+kE++Llgqnvn+Y +dl g  +                      +adL++el++   + r r+ts hpkd+ del+++iae+++ +++lh p Qsgs+ +L++MrR ytre yle++e++r+++p +++s+d+I GF gEte+  ++tl+l+++v+f+k+++f Ys re+t+a  +l+d+vpe+vk++Rl++++++ ++ +++ n++  G+++  L+++ +kk+ege+ grt+ nk vv+e k ++ 
  MMETSP1137-20121227|1638_1   2 GRERSRPFASIAQEVARLAEDGYKEVTLLGQNVNSYAVDLGGAGAletpalrqgfrskvspvkgdfrFADLMRELAAAHPEVRFRFTSPHPKDFPDELLSVIAEYPNACQSLHXPAQSGSSAVLEAMRRDYTREAYLELIEQVREQLPAASISSDFISGFCGETEDXHQQTLSLIQRVRFEKAFMFAYSLREKTHAHrNLQDDVPEDVKQRRLREVIDVFNRGARQANDEEPGNVHLLLIDGLSKKSEGEWVGRTDCNKRVVFERKPTRI 271
                 9****************************************97778999**************************************************************************************************************************************************973699*****************************************99*******************9875544 PP

>> TIGR01579  MiaB-like-C: MiaB-like tRNA modifying enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.5   0.0   2.8e-08   1.3e-05     163     202 ..       2      41 ..       1      49 [. 0.92
   2 !  117.8   0.0   3.3e-37   1.5e-34     205     403 ..      66     267 ..      58     278 .. 0.91

  Alignments for each domain:
  == domain 1    score: 22.5 bits;  conditional E-value: 2.8e-08
   TIGR01579 163 GrsrSvelekvleqvkalvakgykEvvltGvnlssYgedl 202
                 Gr rS++  ++ ++v++l+++gykEv l G n+ sY  dl
  MMETSP1137-20121227|1638_1   2 GRERSRPFASIAQEVARLAEDGYKEVTLLGQNVNSYAVDL 41 
                 9***********************************9887 PP

  == domain 2    score: 117.8 bits;  conditional E-value: 3.3e-37
   TIGR01579 205 glslakLlekilkieglkriRlsSlepeevdeelleliasekklcphlHlslQsgsdkvLkrmrRkytrddilklveklrsvrpelalgtDiIvgfPgEteedfqetlrlvkelelsklHiFpySaRegTkaa.amdakveetiakeRvkalkelaekvkqevlkkllgkelevlve..kskaeevltgkseeylkvkvese 403
                 + ++a+L++++ + +   r R  S +p++  +ell++ia+ ++ c++lH   Qsgs  vL+ mrR ytr+++l+l+e++r++ p  ++++D+I gf gEte+ +q+tl l++++++ k  +F yS Re+T+a  ++++ v+e +++ R++++  + ++  ++   +  g+ + +l++   +k+e+ ++g+++   +v +e +
  MMETSP1137-20121227|1638_1  66 DFRFADLMRELAAAHPEVRFRFTSPHPKDFPDELLSVIAEYPNACQSLHXPAQSGSSAVLEAMRRDYTREAYLELIEQVREQLPAASISSDFISGFCGETEDXHQQTLSLIQRVRFEKAFMFAYSLREKTHAHrNLQDDVPEDVKQRRLREVIDVFNRGARQANDEEPGNVHLLLIDglSKKSEGEWVGRTDCNKRVVFERK 267
                 5689********************************************************************************************************************************835899*************999999999999999989988888863334555579999998888888755 PP

>> TIGR01125  TIGR01125: ribosomal protein S12 methylthiotransferase RimO
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  139.0   0.0   1.1e-43     5e-41     160     395 ..       2     259 ..       1     296 [. 0.92

  Alignments for each domain:
  == domain 1    score: 139.0 bits;  conditional E-value: 1.1e-43
   TIGR01125 160 GklrsrkieeilkeakrLvdegvkeiiliaqdttaYGvDlkt....................dreaklaeLlekLekle.ikWirllYlyPdelvdevielmaesekvlpYlDiPlqhasdkiLklmrrpksaekqldlieklrekvpelvlrstfivGfPgeteedfqeLldfveearldklGvftysdeegtdaa.eLpdavpeevkeerlerlmalqqrisakkleelvGkklevlidekeeetdleligrtlae 395
                 G++rsr+  +i +e+ rL+++g ke+ l+ q++ +Y vDl                      +++ ++a+L+++L   + ++  r+   +P++  de+++++ae ++  + l  P q  s  +L +mrr + +e  l+lie++re++p + + s fi Gf gete+  q+ l  +++ r++k  +f ys  e+t+a+ +L+d+vpe+vk++rl +++++ +r +++ ++e  G++  +lid+  ++ + e +grt  +
  MMETSP1137-20121227|1638_1   2 GRERSRPFASIAQEVARLAEDGYKEVTLLGQNVNSYAVDLGGagaletpalrqgfrskvspvKGDFRFADLMRELAAAHpEVRFRFTSPHPKDFPDELLSVIAEYPNACQSLHXPAQSGSSAVLEAMRRDYTREAYLELIEQVREQLPAASISSDFISGFCGETEDXHQQTLSLIQRVRFEKAFMFAYSLREKTHAHrNLQDDVPEDVKQRRLREVIDVFNRGARQANDEEPGNVHLLLIDGLSKKSEGEWVGRTDCN 259
                 899*************************************98899999******99999998888***********99989888889999*********************************************************************************************************9648************************************************99*****9755 PP

>> TIGR01578  MiaB-like-B: MiaB-like tRNA modifying enzyme, archaeal-type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  110.1   0.0     5e-35   2.3e-32     157     411 ..       2     294 ..       1     303 [. 0.78

  Alignments for each domain:
  == domain 1    score: 110.1 bits;  conditional E-value: 5e-35
   TIGR01578 157 GklaSyppEkivekarelvaeGakeikltsqDtaaYGkDiGer....LpeL...lr.liteiegefrlRVGmmnpknvleil.............delievfqs.ekvykfLHlPvqSgsdsvLkemkReytvddfedivekfrerledltlstDiivGfptEtdddfeetlellrklrpekinvtkfspRpgteaak..lkrldakikkkrskaltklkeevllekkenliGkrekVlvte...egvGevlkdeddat...........vqvvisekeleigefakveitga 411
                 G+ +S+p   i++++  l ++G ke+ l +q+   Y +D+G       p L   +r  ++ ++g+fr    m +   +++ +             del +v ++ ++  + LH P qSgs  vL+ m+R+yt++++ +++e++re+l+  ++s D+i Gf++Et+d +++tl l++++r+ek ++  +s R++t+a +   ++++  +k++r +++ ++ +    +++++  G+ +  l+     +  Ge + ++d  +                se+el +g++  +++t+ 
  MMETSP1137-20121227|1638_1   2 GRERSRPFASIAQEVARLAEDGYKEVTLLGQNVNSYAVDLGGAgaleTPALrqgFRsKVSPVKGDFRFADLMRELAAAHPEVrfrftsphpkdfpDELLSVIAEyPNACQSLHXPAQSGSSAVLEAMRRDYTREAYLELIEQVREQLPAASISSDFISGFCGETEDXHQQTLSLIQRVRFEKAFMFAYSLREKTHAHRnlQDDVPEDVKQRRLREVIDVFNRGARQANDEEPGNVHLLLIDGlskKSEGEWVGRTDCNKrvvferkptriSAGSASESELAVGDYVAIRVTES 294
                 67789999999999999**********************996433223555332667899999999976655443333321111112222222339*******99*******************************************************************************************8733578999**************9999999999999988888755666778888887777764444555533222233445577888888887765 PP

>> TIGR04013  B12_SAM_MJ_1487: B12-binding domain/radical SAM domain protein, MJ_1487 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.0   0.0   1.7e-12   7.7e-10     251     334 ..      94     180 ..      72     224 .. 0.87

  Alignments for each domain:
  == domain 1    score: 36.0 bits;  conditional E-value: 1.7e-12
   TIGR04013 251 fvteealelikkyvan.rrlviGaQsgsdrvLkaikRgHtvedvveavelaleagltpvv..DfIlGlPgeteedqeatlelikklv 334
                    +e l++i++y +  ++l+  aQsgs +vL+a++R  t e   e +e+++e+   +++  DfI G+ gete+  ++tl+li+++ 
  MMETSP1137-20121227|1638_1  94 DFPDELLSVIAEYPNAcQSLHXPAQSGSSAVLEAMRRDYTREAYLELIEQVREQLPAASIssDFISGFCGETEDXHQQTLSLIQRVR 180
                 556899*******875389*******************************999865554444*********************9986 PP

>> TIGR04014  B12_SAM_MJ_0865: B12-binding domain/radical SAM domain protein, MJ_0865 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.0   0.0   2.6e-11   1.2e-08     187     343 ..       5     186 ..       1     193 [. 0.76

  Alignments for each domain:
  == domain 1    score: 32.0 bits;  conditional E-value: 2.6e-11
   TIGR04014 187 rsreleeiveevkelkrkGarrlaisGGtgslygske...a.idkeafiellk..........klsevlGkknlsvPdirvdlvd.......deileaireytiGW..vffGiesGsdrilrlmkkGitvdkvleavelarev..gvkvaGsfivgyPgeteedyeatkdlleelelddvfv 343
                 rsr+  +i +ev  l + G + +++ G  +  y+ +    + +++ a+++ ++          ++++++ +   + P++r  + +       de+l  i ey +    +    +sGs  +l++m++  t++  le +e++re   +  ++  fi g+ gete+ +++t  l++ + ++  f+
  MMETSP1137-20121227|1638_1   5 RSRPFASIAQEVARLAEDGYKEVTLLGQNVNSYAVDLggaGaLETPALRQGFRskvspvkgdfRFADLMRELAAAHPEVRFRFTSphpkdfpDELLSVIAEYPNACqsLHXPAQSGSSAVLEAMRRDYTREAYLELIEQVREQlpAASISSDFISGFCGETEDXHQQTLSLIQRVRFEKAFM 186
                 8999999999999999999999999999999998764322247777666544321111112222345555556678999987765333334489********88652278889****************************97445778889*********************999988875 PP

>> TIGR03994  rSAM_HemZ: coproporphyrinogen dehydrogenase HemZ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0   1.3e-06    0.0006     206     312 ..     118     227 ..      92     233 .. 0.81

  Alignments for each domain:
  == domain 1    score: 16.8 bits;  conditional E-value: 1.3e-06
   TIGR03994 206 qtmndktLkliGRkHtvedvveafklare.lGfdninmDlivGLpgetleeveetleevkklaPesltvHalalkrasrlklekek..yeeakaeetaemlelaaelaee 312
                 q+ +  +L+++ R +t e   e  + +re l   +i  D+i G  get++  ++tl+ +++++ e+  + a +l+  ++ + + ++   e+ k++  +e++++ ++ a++
  MMETSP1137-20121227|1638_1 118 QSGSSAVLEAMRRDYTREAYLELIEQVREqLPAASISSDFISGFCGETEDXHQQTLSLIQRVRFEKAFMFAYSLREKTHAHRNLQDdvPEDVKQRRLREVIDVFNRGARQ 227
                 788899******************9999736899******************************9999988888766665555433226677777778888877776665 PP

>> TIGR04107  rSAM_HutW: putative heme utilization radical SAM enzyme HutW
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   3.2e-05     0.014     160     243 ..     118     202 ..     112     233 .. 0.82

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 3.2e-05
   TIGR04107 160 QsfdtevRrrlgRlddreevlerleeLsa.ldraavviDLlyGLpgqteeiweeDleivaelgldGvdlYaLnllpgtplakave 243
                 Qs +++v  ++ R   re  le +e++ + l  a++  D + G+ g te+  ++ l+ +++++ +   ++a  l ++t  ++  +
  MMETSP1137-20121227|1638_1 118 QSGSSAVLEAMRRDYTREAYLELIEQVREqLPAASISSDFISGFCGETEDXHQQTLSLIQRVRFEKAFMFAYSLREKTHAHRNLQ 202
                 889999999*****************986268899***********************999998888777777777766665555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (327 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       137  (0.0333983); expected 82.0 (0.02)
Passed bias filter:                      129  (0.0314481); expected 82.0 (0.02)
Passed Vit filter:                        18  (0.0043881); expected 4.1 (0.001)
Passed Fwd filter:                         9  (0.00219405); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.40u 0.17s 00:00:00.57 Elapsed: 00:00:00.52
# Mc/sec: 830.01
//
Query:       MMETSP1137-20121227|1639_1  [L=402]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (402 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        54  (0.0131643); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.15s 00:00:00.42 Elapsed: 00:00:00.44
# Mc/sec: 1205.90
//
Query:       MMETSP1137-20121227|1640_1  [L=197]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.033   11.3   0.0      0.055   10.6   0.0    1.4  2  TIGR03242 arg_catab_astE: succinylglutamate desuccinylase


Domain annotation for each model (and alignments):
>> TIGR03242  arg_catab_astE: succinylglutamate desuccinylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   1.3e-05     0.055      53     106 ..      60     116 ..      33     129 .. 0.76
   2 ?   -3.4   0.0      0.25     1e+03      27      51 ..     146     172 ..     136     174 .. 0.68

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 1.3e-05
   TIGR03242  53 netaPielleqllsdiaagk..lqlkvr.lLlilGnpaalrkgkRyleedlnRlfgG 106
                 +e   +++++ ll+++ a++  l+ +++ lL+++Gn++al++     ++++ +l + 
  MMETSP1137-20121227|1640_1  60 EEGCSVDMVQDLLEELKAESkeLTKRQQaLLILIGNLQALNAKPEANQSEIKKLVSA 116
                 688899**********987511544444367889*******9888888888777665 PP

  == domain 2    score: -3.4 bits;  conditional E-value: 0.25
   TIGR03242  27 ldeGvlelePe..aeaekslvisaGih 51 
                 +  G+ +l P+   +++ + v+s G h
  MMETSP1137-20121227|1640_1 146 QRAGLSRLSPAdpPTTTLAFVVSGGKH 172
                 556788888883334455668888877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (197 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       224  (0.0546075); expected 82.0 (0.02)
Passed bias filter:                      184  (0.0448562); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.23u 0.20s 00:00:00.43 Elapsed: 00:00:00.31
# Mc/sec: 838.77
//
Query:       MMETSP1137-20121227|1641_1  [L=398]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      1e-35  120.9   0.0    1.6e-35  120.3   0.0    1.2  1  TIGR00257 IMPACT_YIGZ: uncharacterized protein, YigZ family


Domain annotation for each model (and alignments):
>> TIGR00257  IMPACT_YIGZ: uncharacterized protein, YigZ family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  120.3   0.0     4e-39   1.6e-35       5     198 ..     200     387 ..     197     391 .. 0.93

  Alignments for each domain:
  == domain 1    score: 120.3 bits;  conditional E-value: 4e-39
   TIGR00257   5 ylvpknavtskeeikkSrFitylarvekkddakkfikkikkehknAtHvvvafvigeeddilklgfsDDgEPagtaGkPmLevlkkedlkdilavvvRYfGGilLGtGGLikAYgksvkealnnieveekkeleilslsldYkqldklekllkkleleliesnfsnkvelevaveekekeafsekltelssgkl 198
                  ++ +++ +++  +kkSrF++   +v + d+a +fik   +  ++A H++ af ++     ++   s DgEP gtaG P+L++++++  +d+++vv+RY+GGi+LGtGGL++AYg++++ +l+ +  +e ++l  +++ ++ +  +++   l ++   + e   s+  e+   v+ +e++a+ ++lt  ++g+ 
  MMETSP1137-20121227|1641_1 200 VMTIAAECKHELIVKKSRFVARARHVRTSDEAMAFIKD--NSDPKASHNCFAFSLSGGA--QR--SSNDGEPGGTAGPPILAAIEGSGYQDVAVVVTRYYGGIKLGTGGLVRAYGGAASACLHDAMPKEIVPLVPVRVRFEASDTGAVYSTLGQYAGAMHEVPGSAMLEILCDVPPAEVSALDQQLTSATKGRV 387
                 567788999999************************97..5679*********887554..44..368***********************************************************************************************************************9999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (398 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       106  (0.0258411); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.30u 0.12s 00:00:00.42 Elapsed: 00:00:00.45
# Mc/sec: 1167.37
//
Query:       MMETSP1137-20121227|1642_1  [L=1024]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1024 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       184  (0.0448562); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.63u 0.17s 00:00:00.80 Elapsed: 00:00:00.56
# Mc/sec: 2371.17
//
Query:       MMETSP1137-20121227|1643_1  [L=66]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (66 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        31  (0.00755729); expected 82.0 (0.02)
Passed bias filter:                       25  (0.00609459); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.13s 00:00:00.24 Elapsed: 00:00:00.25
# Mc/sec: 348.45
//
Query:       MMETSP1137-20121227|1644_1  [L=324]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-09   35.6   0.0    2.2e-08   31.7   0.0    2.0  2  TIGR03695 menH_SHCHC: 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase
    9.1e-09   32.5   0.5    1.1e-05   22.4   0.2    2.2  2  TIGR03056 bchO_mg_che_rel: putative magnesium chelatase accessory protein
    3.8e-07   27.6   0.0    3.8e-05   21.0   0.0    2.1  2  TIGR02427 protocat_pcaD: 3-oxoadipate enol-lactonase
    5.2e-07   27.4   0.0      1e-06   26.4   0.0    1.4  1  TIGR01738 bioH: putative pimeloyl-BioC--CoA transferase BioH
     0.0056   13.9   0.0     0.0083   13.3   0.0    1.1  1  TIGR02240 PHA_depoly_arom: poly(3-hydroxyalkanoate) depolymerase
  ------ inclusion threshold ------
      0.051   10.6   0.0      0.069   10.2   0.0    1.1  1  TIGR03343 biphenyl_bphD: 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase


Domain annotation for each model (and alignments):
>> TIGR03695  menH_SHCHC: 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.7   0.0   3.2e-11   2.2e-08       3     106 ..      25     134 ..      23     155 .. 0.84
   2 ?    1.8   0.0     0.041        28     230     251 ..     288     309 ..     267     310 .. 0.79

  Alignments for each domain:
  == domain 1    score: 31.7 bits;  conditional E-value: 3.2e-11
   TIGR03695   3 pvlvlLHGflgskedwqalieeleekfsv........lalDLpgHGkskslkekeakdfeeaaqellkelleklkiekviLvGYSlGGRialalaleaperleglilesasp 106
                 p+l+++HGf  s+++w++l+++l++++ +         alDL+g G+s++++    ++ +    ++++ ++e ++ ++v+L G S+GG +   +a +     +gl+l ++  
  MMETSP1137-20121227|1644_1  25 PALLCVHGFAASSRQWRRLVKSLRAQHAAagtpmpdvYALDLVGFGRSETPA--LSYTQHLWEAQIVDFVMEVMEGRPVVLAGNSIGGGLSAGAASNLGPICRGLVLCNTAG 134
                 689********************8666655777777689**********994..45666666778899999999****************9999998888888888877765 PP

  == domain 2    score: 1.8 bits;  conditional E-value: 0.041
   TIGR03695 230 eaGHnihlenpeafakileefl 251
                  aGH+ h e p++ a+++  +l
  MMETSP1137-20121227|1644_1 288 PAGHCPHDEAPDEVAAAICDWL 309
                 48************99998776 PP

>> TIGR03056  bchO_mg_che_rel: putative magnesium chelatase accessory protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.4   0.2   1.6e-08   1.1e-05      26     129 ..      19     133 ..       8     137 .. 0.77
   2 !    8.2   0.0   0.00036      0.24     199     277 ..     228     309 ..     213     310 .. 0.73

  Alignments for each domain:
  == domain 1    score: 22.4 bits;  conditional E-value: 1.6e-08
   TIGR03056  26 aaG...PvllllhGagasshsfrklvpllaarfr........vvapdlPGhGftratarfrfslkamaedlakllaaedlsPdaviGhsaGaaialrlaldlpvrPravvginaa 129
                 + G   P ll +hG +ass  +r+lv +l a++         v a dl G G + ++a         a+ +  +++  + +P ++ G s G+ + +  a +l    r +v  n+a
  MMETSP1137-20121227|1644_1  19 SCGerpPALLCVHGFAASSRQWRRLVKSLRAQHAaagtpmpdVYALDLVGFGRSETPALSYTQHLWEAQIVDFVMEVMEGRPVVLAGNSIGGGLSAGAASNLGPICRGLVLCNTA 133
                 34466699*********************887743333333388999999999998887444444556667778889999**************999888765558888888776 PP

  == domain 2    score: 8.2 bits;  conditional E-value: 0.00036
   TIGR03056 199 galsmmaqWelaplqralpriavPvlliageedkavppdvskeaatrl....platlrevpGlGhlvheedadgvaglildav 277
                 ++ ++ aq  l+ +  +    a Pvl+  ge d    +  ++e a+ l    p  ++ ++p  Gh  h+e++d va+ i d++
  MMETSP1137-20121227|1644_1 228 SGQKLPAQRPLNEVLSERWGFAGPVLVPQGELDPLSGAGRAQERAEALrvlrPHVSVIRLPA-GHCPHDEAPDEVAAAICDWL 309
                 55555666666666666666777888888888877666666666654422346788999999.****************9996 PP

>> TIGR02427  protocat_pcaD: 3-oxoadipate enol-lactonase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.0   0.0   5.5e-08   3.8e-05      41     123 ..      60     143 ..      21     160 .. 0.78
   2 !    4.6   0.0    0.0059         4     195     250 ..     251     309 ..     241     310 .. 0.75

  Alignments for each domain:
  == domain 1    score: 21.0 bits;  conditional E-value: 5.5e-08
   TIGR02427  41 rvlryDkrGHGlSdvpegpysiedl.addvlallDalgiekaavcGlSlGGliaqaLaarrpdrvealvlsntaakigtaesWe 123
                  v ++D  G G+S+ p+ +y+ +   a+ v  +++ ++ + ++++G S+GG ++++ a++ +   + lvl+nta  + ++e + 
  MMETSP1137-20121227|1644_1  60 DVYALDLVGFGRSETPALSYTQHLWeAQIVDFVMEVMEGRPVVLAGNSIGGGLSAGAASNLGPICRGLVLCNTAGVLVKPEEYI 143
                 46789****************9987255566689999*************************************9887777665 PP

  == domain 2    score: 4.6 bits;  conditional E-value: 0.0059
   TIGR02427 195 PtlviaGdeDgstPpelvreiadl..vpgarfaeiee.aaHlpnleqpeafaallrdfl 250
                 P+lv  G+ D+ + +  ++e a++  v  +++++i+  a+H p  e+p+++aa++ d+l
  MMETSP1137-20121227|1644_1 251 PVLVPQGELDPLSGAGRAQERAEAlrVLRPHVSVIRLpAGHCPHDEAPDEVAAAICDWL 309
                 88888888888777766655555412566667777655****************99987 PP

>> TIGR01738  bioH: putative pimeloyl-BioC--CoA transferase BioH
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.4   0.0   1.5e-09     1e-06       5     109 ..      25     143 ..      21     153 .. 0.81

  Alignments for each domain:
  == domain 1    score: 26.4 bits;  conditional E-value: 1.5e-09
   TIGR01738   5 kklvLihGWglnaevfadlveeLsahft........lslvDLPGyGdsae.....lralslaevaeailaqap.akaiwlGWsLGGLvalhlalthpdkvrsLvlvasspkfaaredwp 109
                 ++l+ +hG+++ +  ++ lv+ L+a++         +++ DL G+G+s++      + l  a++++ +++ ++ ++ ++ G s+GG +++ +a ++    r+Lvl  ++  +++ e++ 
  MMETSP1137-20121227|1644_1  25 PALLCVHGFAASSRQWRRLVKSLRAQHAaagtpmpdVYALDLVGFGRSETpalsyTQHLWEAQIVDFVMEVMEgRPVVLAGNSIGGGLSAGAASNLGPICRGLVLCNTAGVLVKPEEYI 143
                 57899********************995444455559**********765222213344457889999998872556777******9999*************************9996 PP

>> TIGR02240  PHA_depoly_arom: poly(3-hydroxyalkanoate) depolymerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   0.0   1.2e-05    0.0083      49     128 ..      56     135 ..      46     143 .. 0.86

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 1.2e-05
   TIGR02240  49 dpeleviafdvpgvggsstprvpyrfp.glaklaarmldyldygqvnvigvswggalaqqfahdyperckklvlaataaga 128
                  p  +v a+d+ g g s tp+  y      a+++  +++ ++   v   g s gg l+   a +    c+ lvl+ ta   
  MMETSP1137-20121227|1644_1  56 TPMPDVYALDLVGFGRSETPALSYTQHlWEAQIVDFVMEVMEGRPVVLAGNSIGGGLSAGAASNLGPICRGLVLCNTAG-V 135
                 5667899*****************755156899999999999999*****************************99864.3 PP

>> TIGR03343  biphenyl_bphD: 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0    0.0001     0.069      32     123 ..      26     121 ..      18     138 .. 0.78

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 0.0001
   TIGR03343  32 avimlhgggpgaggwsnyyrniea.lvdagy...rvilkdapgfnksdevvmdeqrglvnaravkglmdaldiekahlvgnsmggatalnfaleyp 123
                 a++ +hg    +  w    + + a  + ag     v   d  gf +s++  +   + l +a+ v  +m++++     l gns+gg  +   a +  
  MMETSP1137-20121227|1644_1  26 ALLCVHGFAASSRQWRRLVKSLRAqHAAAGTpmpDVYALDLVGFGRSETPALSYTQHLWEAQIVDFVMEVMEGRPVVLAGNSIGGGLSAGAASNLG 121
                 566788888888888888888876245566533358899*********************************************987666665555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (324 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        96  (0.0234032); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.28u 0.17s 00:00:00.45 Elapsed: 00:00:00.40
# Mc/sec: 1069.11
//
Query:       MMETSP1137-20121227|1645_1  [L=348]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (348 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       142  (0.0346173); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.16s 00:00:00.46 Elapsed: 00:00:00.40
# Mc/sec: 1148.31
//
Query:       MMETSP1137-20121227|1646_1  [L=100]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (100 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        66  (0.0160897); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.13s 00:00:00.27 Elapsed: 00:00:00.27
# Mc/sec: 488.85
//
Query:       MMETSP1137-20121227|1647_1  [L=47]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (47 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        42  (0.0102389); expected 82.0 (0.02)
Passed bias filter:                       40  (0.00975134); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.27
# Mc/sec: 229.76
//
Query:       MMETSP1137-20121227|1648_1  [L=194]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (194 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        31  (0.00755729); expected 82.0 (0.02)
Passed bias filter:                       28  (0.00682594); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.16s 00:00:00.33 Elapsed: 00:00:00.28
# Mc/sec: 914.50
//
Query:       MMETSP1137-20121227|1649_1  [L=254]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (254 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       232  (0.0565578); expected 82.0 (0.02)
Passed bias filter:                      164  (0.0399805); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.17s 00:00:00.41 Elapsed: 00:00:00.52
# Mc/sec: 644.72
//
Query:       MMETSP1137-20121227|1650_1  [L=620]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.7e-47  157.6   3.8    3.2e-30  103.0   0.0    2.2  2  TIGR03377 glycerol3P_GlpA: glycerol-3-phosphate dehydrogenase, anaerobic, A subunit
    3.6e-08   30.7   0.8    9.9e-05   19.4   0.3    2.3  2  TIGR02352 thiamin_ThiO: glycine oxidase ThiO
    5.2e-07   26.9   0.2    9.7e-07   26.0   0.1    1.4  1  TIGR03364 HpnW_proposed: FAD dependent oxidoreductase TIGR03364
    5.8e-07   27.3   0.4    0.00019   19.0   0.0    2.5  2  TIGR02032 GG-red-SF: geranylgeranyl reductase family
    9.1e-05   18.2   0.3    0.00019   17.2   0.0    1.5  2  TIGR01372 soxA: sarcosine oxidase, alpha subunit family
    0.00016   18.7   1.1    0.00025   18.0   0.4    1.6  2  TIGR03197 MnmC_Cterm: tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain
    0.00069   16.1   0.0     0.0012   15.3   0.0    1.3  1  TIGR03140 AhpF: alkyl hydroperoxide reductase, F subunit
    0.00098   15.4   0.0     0.0015   14.8   0.0    1.2  1  TIGR03997 mycofact_OYE_2: mycofactocin system FadH/OYE family oxidoreductase 2
     0.0013   15.4   0.1     0.0023   14.5   0.1    1.4  1  TIGR01350 lipoamide_DH: dihydrolipoyl dehydrogenase
     0.0018   14.8   1.2       0.11    8.9   0.1    2.2  2  TIGR01813 flavo_cyto_c: flavocytochrome c
     0.0031   14.5   0.1      0.005   13.8   0.1    1.3  1  TIGR01790 carotene-cycl: lycopene cyclase family protein
     0.0056   13.5   0.0       0.01   12.7   0.0    1.4  1  TIGR03378 glycerol3P_GlpB: glycerol-3-phosphate dehydrogenase, anaerobic, B subunit
     0.0073   13.0   0.4      0.012   12.3   0.3    1.3  1  TIGR00275 TIGR00275: flavoprotein, HI0933 family
  ------ inclusion threshold ------
      0.013   12.2   0.0      0.023   11.4   0.0    1.3  1  TIGR01373 soxB: sarcosine oxidase, beta subunit family
      0.013   11.4   0.6       0.16    7.8   0.1    2.2  2  TIGR01816 sdhA_forward: succinate dehydrogenase, flavoprotein subunit
      0.014   12.4   0.2      0.022   11.8   0.1    1.2  1  TIGR01421 gluta_reduc_1: glutathione-disulfide reductase
      0.018   11.7   0.1      0.031   10.9   0.1    1.3  1  TIGR01984 UbiH: 2-polyprenyl-6-methoxyphenol 4-hydroxylase
      0.019   11.6   0.3      0.044   10.4   0.0    1.6  2  TIGR04018 Bthiol_YpdA: putative bacillithiol system oxidoreductase, YpdA family


Domain annotation for each model (and alignments):
>> TIGR03377  glycerol3P_GlpA: glycerol-3-phosphate dehydrogenase, anaerobic, A subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.3   1.3   7.7e-18   1.7e-15       1      52 [.      17      68 ..      17      74 .. 0.96
   2 !  103.0   0.0   1.4e-32   3.2e-30     127     384 ..     174     443 ..     157     483 .. 0.84

  Alignments for each domain:
  == domain 1    score: 54.3 bits;  conditional E-value: 7.7e-18
   TIGR03377  1 dvvviGGGatGaGilRDlalRglkvvLlekkdlasGttgRnhGLLhsGaRYa 52
                d++viGGGatG+G++ D + Rgl+v L+e++d asGt++R   L+h G RY 
  MMETSP1137-20121227|1650_1 17 DILVIGGGATGTGVAMDASTRGLTVALIERDDFASGTSSRSTKLIHGGLRYL 68
                689************************************************6 PP

  == domain 2    score: 103.0 bits;  conditional E-value: 1.4e-32
   TIGR03377 127 elikavkvpDgtvDpfrlvaanvldakehGariltytkvvgliregd.......rvtgvkvedlktgeeeeieaevvvnaaGaWaqeiaeladlkie..lvpakGvllvlnhRlnnkvinRlrkpsdaDi..lvPgdtisllGttsekvddiddleveqeevdelldegakliPa.laeaRilrafaGvRPLvasdd.desg.reisRgivlldheerdgleGlisivGGklttyRlmaekvtdv...vckklgndkecrtaeeplpgsedakal 384
                 +l++a+  ++g  +  r+ ++ +l a ++Ga + ++t+v +l++eg+       rv+g +v+d+ tge+++++a++v+naaG++++ i ++a+ + +  +v+  G+ lv     + + +  +    d+ +  l P +  +l Gtt++k +  d+ + + ++vd +l e ++++   l+   +  a+ G RPLv+++d d+s+ +++sR+ v+ d   r    Gl++i+GGk ttyR ma+ + d+   + k l     c+t +++l+gs+ + ++
  MMETSP1137-20121227|1650_1 174 KLKGALVFNEGQQNDTRMNVHIALTAAQNGAALANHTAVESLLTEGGkpgdkdyRVVGARVKDVFTGETYDVRAKQVINAAGVFSDAIRKMAEPEATdiMVAGPGTHLVTPDYTSPNAMGFMWFTEDGRVlyLLPWEGSTLAGTTDNKGEVTDKPQATMDDVDFILGECNRVLKEpLDYSHVKAAWNGLRPLVRDPDaDPSDtKKLSRDHVV-D--VRA--GGLVTICGGKWTTYRAMAQDAIDKalsMNKSLKPVCGCQTLDMTLIGSDRSGEV 443
                 6888888999999999***************************987533334447*************************************975533488999*99999999999999999999999883358********************************9988766651666667778********986526777899***9775.4..354..5********************9963336789999999***********876654 PP

>> TIGR02352  thiamin_ThiO: glycine oxidase ThiO
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.3   4.3e-07   9.9e-05       1      38 [.      18      55 ..      18      60 .. 0.95
   2 !    9.4   0.0   0.00048      0.11     179     308 ..     229     368 ..     165     381 .. 0.73

  Alignments for each domain:
  == domain 1    score: 19.4 bits;  conditional E-value: 4.3e-07
   TIGR02352  1 vlviGgGviGlsvAveLakrghkvtllekdevgsgAsk 38
                +lviGgG  G  vA+ ++ rg  v+l+e+d+++sg+s+
  MMETSP1137-20121227|1650_1 18 ILVIGGGATGTGVAMDASTRGLTVALIERDDFASGTSS 55
                79*********************************996 PP

  == domain 2    score: 9.4 bits;  conditional E-value: 0.00048
   TIGR02352 179 argekvtavktsse.kvqadqvvlaaGawakellp.....lalrpvkgeilrlevpaekllnrpvravv..yqrqvYivPredgrlvvGAtseesg..fdttvtlegvkeLledaievlPa.lkeaelletwaGlRPatpD 308
                   g +v +v t +  +v a qv+ aaG+ + ++ +          v+g    l +p+++++n +   +    +r +Y+ P e    + G t ++ +  ++ + t++ v  +l +  +vl   l   ++  +w GlRP   D
  MMETSP1137-20121227|1650_1 229 VVGARVKDVFTGETyDVRAKQVINAAGVFSDAIRKmaepeATDIMVAGPGTHLVTPDYTSPNAMGFMWFteDGRVLYLLPWEGS-TLAGTTDNKGEvtDKPQATMDDVDFILGECNRVLKEpLDYSHVKAAWNGLRPLVRD 368
                 4455566666555448**************9999955555333445555556667776666665444441156789****9877.889***9876511566778899**********99763777788999******8876 PP

>> TIGR03364  HpnW_proposed: FAD dependent oxidoreductase TIGR03364
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.0   0.1   4.3e-09   9.7e-07       2      41 ..      17      56 ..      16      59 .. 0.96

  Alignments for each domain:
  == domain 1    score: 26.0 bits;  conditional E-value: 4.3e-09
   TIGR03364  2 dvvvvGaGivGlahAlaaarrGlkVtvierssraaGAsvr 41
                d++v+G+G  G+  A+ a+ rGl+V++ier++ a G s r
  MMETSP1137-20121227|1650_1 17 DILVIGGGATGTGVAMDASTRGLTVALIERDDFASGTSSR 56
                89**********************************9976 PP

>> TIGR02032  GG-red-SF: geranylgeranyl reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.0   8.5e-07   0.00019       1      35 [.      16      50 ..      16     100 .. 0.96
   2 !    5.9   0.1    0.0086         2      95     156 ..     193     265 ..     188     279 .. 0.76

  Alignments for each domain:
  == domain 1    score: 19.0 bits;  conditional E-value: 8.5e-07
   TIGR02032  1 yDvvvvGaGpaGssaAlrlakkGlrVlllekkelp 35
                +D++v+G+G  G  +A ++++ Gl+V+l+e+ ++ 
  MMETSP1137-20121227|1650_1 16 FDILVIGGGATGTGVAMDASTRGLTVALIERDDFA 50
                7******************************9985 PP

  == domain 2    score: 5.9 bits;  conditional E-value: 0.0086
   TIGR02032  95 elLaekAqeagaelllettvlsveied...........ekvkvevredekkevtakivigAdGakskvakklg 156
                  ++a  A+++ga l  +t+v+s   e+            +++  v ++e  +v+ak vi A G  s   +k+ 
  MMETSP1137-20121227|1650_1 193 VHIALTAAQNGAALANHTAVESLLTEGgkpgdkdyrvvGARVKDVFTGETYDVRAKQVINAAGVFSDAIRKMA 265
                 57888999*************9999999999998755422222233347899************998877765 PP

>> TIGR01372  soxA: sarcosine oxidase, alpha subunit family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.0   8.2e-07   0.00019     169     216 ..      16      63 ..       2      76 .. 0.87
   2 ?   -3.7   0.0       1.6   3.7e+02     272     290 ..     239     257 ..     227     271 .. 0.82

  Alignments for each domain:
  == domain 1    score: 17.2 bits;  conditional E-value: 8.2e-07
   TIGR01372 169 cDvLvvGaGpaGLaaAraAaraGarvilvdeqaeaGGsllseaetidG 216
                  D+Lv+G+G++G   A  A++ G+ v l++ +  a G+   +++ i G
  MMETSP1137-20121227|1650_1  16 FDILVIGGGATGTGVAMDASTRGLTVALIERDDFASGTSSRSTKLIHG 63 
                 6*******************************9999999988888877 PP

  == domain 2    score: -3.7 bits;  conditional E-value: 1.6
   TIGR01372 272 rerlwrvrakrvvlAtGAl 290
                     + vrak+v+ A+G +
  MMETSP1137-20121227|1650_1 239 TGETYDVRAKQVINAAGVF 257
                 5567899******999976 PP

>> TIGR03197  MnmC_Cterm: tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.4   1.1e-06   0.00025       1      47 [.      17      62 ..      17      71 .. 0.91
   2 ?   -3.7   0.0       4.3   9.8e+02     111     157 ..     554     600 ..     537     611 .. 0.67

  Alignments for each domain:
  == domain 1    score: 18.0 bits;  conditional E-value: 1.1e-06
   TIGR03197  1 kvavIGaGiAgaalalsLarrGvqvtllekdeklaqgASgnrqGaly 47
                +++vIG+G  g+ +a   + rG+ v l+e+d + a+g+S+  + +++
  MMETSP1137-20121227|1650_1 17 DILVIGGGATGTGVAMDASTRGLTVALIERD-DFASGTSSRSTKLIH 62
                589****************************.9******98776665 PP

  == domain 2    score: -3.7 bits;  conditional E-value: 4.3
   TIGR03197 111 lpeellravdaeeaselagielpkgglffpqggwlsPpelvkallak 157
                 l ++ l++ +a + +e+ ++    + +++p++g    +e+vk+++++
  MMETSP1137-20121227|1650_1 554 LMQKELKWSSARKEQERKDAVAFLETMYMPSAGDKTAEEVVKEVINR 600
                 45555666677777777777777777777777777777777777665 PP

>> TIGR03140  AhpF: alkyl hydroperoxide reductase, F subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   5.2e-06    0.0012     206     242 ..       9      45 ..       2      58 .. 0.89

  Alignments for each domain:
  == domain 1    score: 15.3 bits;  conditional E-value: 5.2e-06
   TIGR03140 206 aeeekekydvlvvGgGPagaaaaiyaarkGlkvalva 242
                 +  +ke++d+lv+GgG  g+  a+ a+ +Gl val+ 
  MMETSP1137-20121227|1650_1   9 NRLKKEEFDILVIGGGATGTGVAMDASTRGLTVALIE 45 
                 456799****************************995 PP

>> TIGR03997  mycofact_OYE_2: mycofactocin system FadH/OYE family oxidoreductase 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   6.5e-06    0.0015     381     424 ..      17      60 ..       5      82 .. 0.82

  Alignments for each domain:
  == domain 1    score: 14.8 bits;  conditional E-value: 6.5e-06
   TIGR03997 381 kvlvvGgGPaGleaaataarrGhrvtllereeelGGqvklaakl 424
                  +lv+GgG +G   a+ a++rG +v l+er++   G     +kl
  MMETSP1137-20121227|1650_1  17 DILVIGGGATGTGVAMDASTRGLTVALIERDDFASGTSSRSTKL 60 
                 69******************************998876665555 PP

>> TIGR01350  lipoamide_DH: dihydrolipoyl dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.1     1e-05    0.0023       1      34 [.      15      48 ..      15      54 .. 0.91

  Alignments for each domain:
  == domain 1    score: 14.5 bits;  conditional E-value: 1e-05
   TIGR01350  1 eydvvviGgGpgGYvaAiraaqlglkvalvekek 34
                e+d++viGgG  G   A+ a+  gl val+e+++
  MMETSP1137-20121227|1650_1 15 EFDILVIGGGATGTGVAMDASTRGLTVALIERDD 48
                69*****************************965 PP

>> TIGR01813  flavo_cyto_c: flavocytochrome c
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.9   0.1    0.0005      0.11       1      43 [.      17      58 ..      17      75 .. 0.90
   2 !    4.7   0.1    0.0099       2.3     144     207 ..     203     271 ..     172     281 .. 0.74

  Alignments for each domain:
  == domain 1    score: 8.9 bits;  conditional E-value: 0.0005
   TIGR01813  1 dvvvvGsGlAGlsaaleakkaglaevvvleKapviGGNsaiaa 43
                d++v+G G+ G   a++a ++g   v ++e+ +++ G s  ++
  MMETSP1137-20121227|1650_1 17 DILVIGGGATGTGVAMDASTRG-LTVALIERDDFASGTSSRST 58
                89********************.99**********99998765 PP

  == domain 2    score: 4.7 bits;  conditional E-value: 0.0099
   TIGR01813 144 gvelrlnskvedlik......ddqgqvtGvkvke.kgkkikikaakaVvlatGGfgsnkelikkydPelke 207
                 g  l +++ ve l++      d++ +v+G  vk+  +++++ + ak+V+ a G f+   +++k  +Pe  +
  MMETSP1137-20121227|1650_1 203 GAALANHTAVESLLTeggkpgDKDYRVVGARVKDvFTGETYDVRAKQVINAAGVFSD--AIRKMAEPEATD 271
                 55555666666665523333367889********645556668899**********8..888888888766 PP

>> TIGR01790  carotene-cycl: lycopene cyclase family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.1   2.2e-05     0.005       1      32 [.      17      48 ..      17      57 .. 0.89

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 2.2e-05
   TIGR01790  1 DliviGgGlAglaiAlelakpglrvqlieaap 32
                D++viGgG  g+ +A+  + +gl v lie  +
  MMETSP1137-20121227|1650_1 17 DILVIGGGATGTGVAMDASTRGLTVALIERDD 48
                99**************************9655 PP

>> TIGR03378  glycerol3P_GlpB: glycerol-3-phosphate dehydrogenase, anaerobic, B subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.7   0.0   4.4e-05      0.01       1      46 [.      16      61 ..      16     112 .. 0.79

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 4.4e-05
   TIGR03378  1 fDviiiGgGlaGlscalrlaeaGkktaiiaaGqsalhFssGslDll 46
                fD+++iGgG  G   a+ +  +G  +a+i +   a   ss s  l+
  MMETSP1137-20121227|1650_1 16 FDILVIGGGATGTGVAMDASTRGLTVALIERDDFASGTSSRSTKLI 61
                9*****************************9998888888887765 PP

>> TIGR00275  TIGR00275: flavoprotein, HI0933 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.3   0.3   5.2e-05     0.012       1      30 [.      18      47 ..      18      51 .. 0.94

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 5.2e-05
   TIGR00275  1 viiiGgGaaGlmaAitaaeegakVlllEkn 30
                +++iGgGa G   A+ a+++g+ V+l+E+ 
  MMETSP1137-20121227|1650_1 18 ILVIGGGATGTGVAMDASTRGLTVALIERD 47
                68**************************86 PP

>> TIGR01373  soxB: sarcosine oxidase, beta subunit family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0    0.0001     0.023      28      81 ..      13      64 ..       8      75 .. 0.87

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 0.0001
   TIGR01373 28 kpeydviivGgGGhGlatayylakehGitnvavlekgwlGgGnvgrnttivrsn 81
                k+e+d++++GgG  G   a   a   G+t va++e++ + +G  +r t ++   
  MMETSP1137-20121227|1650_1 13 KEEFDILVIGGGATGTGVAM-DASTRGLT-VALIERDDFASGTSSRSTKLIHGG 64
                899***********999986.58889998.9*****************999765 PP

>> TIGR01816  sdhA_forward: succinate dehydrogenase, flavoprotein subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   0.1   0.00072      0.16       2      32 ..      15      45 ..      14      58 .. 0.94
   2 ?    1.4   0.0     0.064        15     168     199 ..     226     257 ..     202     298 .. 0.82

  Alignments for each domain:
  == domain 1    score: 7.8 bits;  conditional E-value: 0.00072
   TIGR01816  2 kfdvvvvGaGGaGlraalelakeglktavvt 32
                +fd++v+G+G +G   a++++ +gl +a + 
  MMETSP1137-20121227|1650_1 15 EFDILVIGGGATGTGVAMDASTRGLTVALIE 45
                7***************************986 PP

  == domain 2    score: 1.4 bits;  conditional E-value: 0.064
   TIGR01816 168 dgevrGvialeletGeihvfrakavvlatGGa 199
                 d +v+G    ++ tGe++ +rak+v+ a+G  
  MMETSP1137-20121227|1650_1 226 DYRVVGARVKDVFTGETYDVRAKQVINAAGVF 257
                 4458888889999***************9965 PP

>> TIGR01421  gluta_reduc_1: glutathione-disulfide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.1   9.6e-05     0.022       2      36 ..      15      49 ..      14      56 .. 0.90

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 9.6e-05
   TIGR01421  2 eydylviGGGsGGiasarraaeyGakallveekkl 36
                e+d+lviGGG+ G   a  a++ G  ++l+e +++
  MMETSP1137-20121227|1650_1 15 EFDILVIGGGATGTGVAMDASTRGLTVALIERDDF 49
                79*****************************9875 PP

>> TIGR01984  UbiH: 2-polyprenyl-6-methoxyphenol 4-hydroxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.1   0.00014     0.031       1      52 [.      17      64 ..      17      75 .. 0.82

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 0.00014
   TIGR01984  1 dviivGgglvGlslAlaLsrksklkialieaksaeaakssfdarslalsags 52
                d++++Ggg +G+ +A+  s+ + l +alie  +  +       rs+ l +g 
  MMETSP1137-20121227|1650_1 17 DILVIGGGATGTGVAMDASTRG-LTVALIERDDFASG---TSSRSTKLIHGG 64
                89********************.*******9998776...556666666665 PP

>> TIGR04018  Bthiol_YpdA: putative bacillithiol system oxidoreductase, YpdA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   0.00019     0.044       1      33 [.      17      49 ..      17      55 .. 0.92
   2 ?   -2.5   0.0       1.6   3.8e+02     108     126 ..     241     259 ..     228     266 .. 0.77

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 0.00019
   TIGR04018  1 dviiiGaGPiGlaaaieakkaglsyliiekgal 33
                d+++iG+G +G  +a++a  +gl++ +ie++  
  MMETSP1137-20121227|1650_1 17 DILVIGGGATGTGVAMDASTRGLTVALIERDDF 49
                89***************************9865 PP

  == domain 2    score: -2.5 bits;  conditional E-value: 1.6
   TIGR04018 108 ekeeyeakkvvvatGyydi 126
                 e+ +++ak+v+ a G++  
  MMETSP1137-20121227|1650_1 241 ETYDVRAKQVINAAGVFSD 259
                 5668999********9964 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (620 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       195  (0.0475378); expected 82.0 (0.02)
Passed bias filter:                      173  (0.0421745); expected 82.0 (0.02)
Passed Vit filter:                        57  (0.0138957); expected 4.1 (0.001)
Passed Fwd filter:                        18  (0.0043881); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              18  [number of targets reported over threshold]
# CPU time: 0.64u 0.12s 00:00:00.76 Elapsed: 00:00:02.00
# Mc/sec: 407.13
//
Query:       MMETSP1137-20121227|1651_1  [L=681]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (681 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       115  (0.0280351); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.12s 00:00:00.55 Elapsed: 00:00:00.68
# Mc/sec: 1321.83
//
Query:       MMETSP1137-20121227|1652_1  [L=211]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-10   37.5   0.0    1.8e-10   37.2   0.0    1.1  1  TIGR03903 TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
    0.00074   16.9   0.0      0.001   16.4   0.0    1.1  1  TIGR03724 arch_bud32: Kae1-associated kinase Bud32


Domain annotation for each model (and alignments):
>> TIGR03903  TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.2   0.0   8.5e-14   1.8e-10      99     183 ..      46     127 ..      20     132 .. 0.86

  Alignments for each domain:
  == domain 1    score: 37.2 bits;  conditional E-value: 8.5e-14
   TIGR03903  99 GvvhRDLkPqnimvsaadveshakvLDFGigaLlpgvedadeatltrttevlGsPaYaaPeqLRgepvtaksDlYaWGLivleCL 183
                  ++hRDLkP n+++  +d+    kv DFG++ L p  ++  +    + t   Gs  Y aPe  R e    k D+Y++ L++ + L
  MMETSP1137-20121227|1652_1  46 PILHRDLKPANLLLDFSDT---LKVADFGLAKLRPLPKNTTKPGELLMTGETGSYRYMAPEVFRHEDYNEKVDVYSFALVFYNML 127
                 599**********988876...6888********999887776555555557****************************98766 PP

>> TIGR03724  arch_bud32: Kae1-associated kinase Bud32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0   5.1e-07     0.001      79     139 ..      16      76 ..       8      87 .. 0.76

  Alignments for each domain:
  == domain 1    score: 16.4 bits;  conditional E-value: 5.1e-07
   TIGR03724  79 iegkklkdlleekelellkevGelvgklH..kagivhgDlttsNiivk.ddklyliDfGLgkks 139
                 i+++ +  ++     ++++++++ ++ lH  k  i+h Dl ++N++++ +d+l + DfGL+k +
  MMETSP1137-20121227|1652_1  16 IQDHSMPRATAF---KYATHFAQGMNYLHlcKPPILHRDLKPANLLLDfSDTLKVADFGLAKLR 76 
                 444444444444...7788888888888833566*************6599999*******975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (211 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        61  (0.0148708); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.20u 0.12s 00:00:00.32 Elapsed: 00:00:00.98
# Mc/sec: 284.18
//
Query:       MMETSP1137-20121227|1653_1  [L=346]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.036   10.9   0.0       0.12    9.2   0.0    1.7  2  TIGR03470 HpnH: hopanoid biosynthesis associated radical SAM protein HpnH


Domain annotation for each model (and alignments):
>> TIGR03470  HpnH: hopanoid biosynthesis associated radical SAM protein HpnH
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0     0.053   2.2e+02     140     172 ..     178     210 ..     163     220 .. 0.61
   2 ?    9.2   0.0   2.9e-05      0.12      47      98 ..     254     304 ..     240     311 .. 0.84

  Alignments for each domain:
  == domain 1    score: -1.5 bits;  conditional E-value: 0.053
   TIGR03470 140 ksvekeGvfdkaveaikkakarGfrvttnttlf 172
                    +k+ vfd a + ++k   r f  +  ttl+
  MMETSP1137-20121227|1653_1 178 LGHHKNSVFDCACDILRKEGVRAFLLSYPTTLL 210
                 344566667777777776666666666666665 PP

  == domain 2    score: 9.2 bits;  conditional E-value: 2.9e-05
   TIGR03470  47 kidypaeilkrrlsveecleavdecgaPvvsiaGGePllhkeideivrelva 98 
                  +++p +++k rl +++c   +  c+ P+v +   +Pl ++ + + v  ++a
  MMETSP1137-20121227|1653_1 254 AVTNPMDVVKTRLQTQHCGV-ASACDGPLVVVCPKKPLAYRGLLHAVSAILA 304
                 457899***********965.578*****************99999998887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (346 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       105  (0.0255973); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.26u 0.14s 00:00:00.40 Elapsed: 00:00:00.67
# Mc/sec: 681.62
//
Query:       MMETSP1137-20121227|1654_1  [L=848]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   5.6e-115  382.6   0.0   7.3e-115  382.3   0.0    1.0  1  TIGR00456 argS: arginine--tRNA ligase
    0.00029   17.9   0.0    0.00046   17.2   0.0    1.2  1  TIGR00435 cysS: cysteine--tRNA ligase
  ------ inclusion threshold ------
      0.029   10.9   0.0      0.047   10.2   0.0    1.2  1  TIGR00398 metG: methionine--tRNA ligase
      0.073    9.0   0.0        0.1    8.5   0.0    1.1  1  TIGR00396 leuS_bact: leucine--tRNA ligase
       0.12    8.1   0.0       0.23    7.1   0.0    1.3  1  TIGR00422 valS: valine--tRNA ligase


Domain annotation for each model (and alignments):
>> TIGR00456  argS: arginine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  382.3   0.0  8.9e-118  7.3e-115      36     501 ..     120     598 ..      87     603 .. 0.91

  Alignments for each domain:
  == domain 1    score: 382.3 bits;  conditional E-value: 8.9e-118
   TIGR00456  36 dyasniafelakelkka.........pkeiaeeiveklktk...eiiekveaagp.finfflspqklleklikkileqkekyGskklk..kkkiviefsSaNpakplHvGHlRsaiiGdslarileflGydvlreyyvnDmGrqigllvlslekagnekkneavkkedhalegvyveinkkleedeeleeearellvkleegdekliklwkrlvelaleeiketlkrlnvkfdefkvesesvkngklkkvledLkekglveed.galvldltefgdkekdvvlqksdgtslYltrDiayhlekler.gfdkliyvlgsdhklhikqlfaileklg.lekkkelehlefglvklks...lktRkGkvisldelldeaskragkvitkkk.dleedekekvaeavglgAvryallskkrekdiefdwdealsfegntvpYiqYahaRirsilrkaeidgekeiaadllll..eekekeLvklllqfpeviee 501
                 dy+ n a++l ++lkka          +++a ++ + + t+    i   v+ ag  fin+ ls+q+l +++++ +l     yG  ++   kk+++++fsS+N+ak++HvGHlRs+iiGd+l+r+l f G++v r ++v+D+G+q+g+l++ l+ +  +        ++++l+++y+e++  +++de ++++a+e++v+l++gd  ++ +w+++++++ +e+++ ++rlnv+++e+   +es++n++++ v+++L e g + e+ ga v++    + + + ++++ksdg+++Y  +D+a+  ++l + ++d l+yv+++ ++ h++ +f +++++g  +++ +l h  fglv +++   +ktR G+v++l +lldea++r+  ++ +++ d++e+e  + a+ +g gAv+ya+l+ +r +d+ f++d++l+ +gnt+ Y+ Ya aRi+si rka  d +++ia   +    +e+e +L ++ll+f+evie 
  MMETSP1137-20121227|1654_1 120 DYQNNSAMPLFGVLKKAgslpegmktSRDVASKLCTAMLTAxsdSILADVQVAGGgFINISLSRQWLSDRVMQVVL-----YGALPPLaqKKRVIVDFSSPNVAKEMHVGHLRSTIIGDTLCRLLTFCGHEVQRVNHVGDWGTQFGMLIAHLKAVFPDF--GSRPPPINDLQQFYREAKGVFDSDEAFKKTAHEEVVRLQSGDGASRAAWQQICQVSRTEFEKVYSRLNVELEEI---GESFYNEYIPPVIAHLTEIGIATESgGAKVIFPPGSKHE-QPLIVTKSDGGFSYDSTDMAAVWYRLLErKADWLVYVTDAGQAPHFELVFLAAKAAGwATEAHTLTHCPFGLVCGEDgkkFKTRSGDVVRLVDLLDEAVTRMLAEMRNREvDMSEEELVRTAKVLGYGAVKYADLKGNRVSDYRFSFDRMLDPKGNTAVYLLYAGARIESIHRKAGVDLDALIASGATVDlaHEAELNLGRMLLRFQEVIEX 598
                 66666666666666554222111111456666665554443233788899999999********************.....**999877899*****************************************************************96..6899**********************************************************************...9**********************************9977.8************************9888****************************99***************999999**********************************99999***************************************************************9987665447******************85 PP

>> TIGR00435  cysS: cysteine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.0   5.6e-07   0.00046      17      68 ..     202     254 ..     197     258 .. 0.87

  Alignments for each domain:
  == domain 1    score: 17.2 bits;  conditional E-value: 5.6e-07
   TIGR00435  17 lsen.kvkiYvCGpTvYdasHlGhaRtlvvfDvlrrilqylgYdvqyvqNiTD 68 
                 l ++ +v +    p v  ++H+Gh R++++ D+l r+l + g +vq v+ + D
  MMETSP1137-20121227|1654_1 202 LAQKkRVIVDFSSPNVAKEMHVGHLRSTIIGDTLCRLLTFCGHEVQRVNHVGD 254
                 555557777788899999*****************************999877 PP

>> TIGR00398  metG: methionine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   5.8e-05     0.047      11      43 ..     218     250 ..     214     262 .. 0.84

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 5.8e-05
   TIGR00398  11 ngkpHlGhllttilaDvlarykrlrGeevlfvt 43 
                    +H+Ghl++ti++D+l r  ++ G+ev  v 
  MMETSP1137-20121227|1654_1 218 AKEMHVGHLRSTIIGDTLCRLLTFCGHEVQRVN 250
                 5689************************98775 PP

>> TIGR00396  leuS_bact: leucine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   0.0   0.00012       0.1      30      69 ..     205     246 ..     181     260 .. 0.82

  Alignments for each domain:
  == domain 1    score: 8.5 bits;  conditional E-value: 0.00012
   TIGR00396  30 kyYiLsmfPYPsga..lHlGHvrnYtitDvlsRykrlkgynv 69 
                 k+ ++  f  P  a  +H+GH+r+ +i+D l R+    g++v
  MMETSP1137-20121227|1654_1 205 KKRVIVDFSSPNVAkeMHVGHLRSTIIGDTLCRLLTFCGHEV 246
                 5555566666654446*****************999888877 PP

>> TIGR00422  valS: valine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   0.0   0.00029      0.23      31      73 ..     204     246 ..     196     252 .. 0.90

  Alignments for each domain:
  == domain 1    score: 7.1 bits;  conditional E-value: 0.00029
   TIGR00422  31 ekesfiiviPPPnvTGslHiGHalevslqDiliRykrmkgknv 73 
                 +k++ i++   Pnv   +H+GH   + + D+l R   + g++v
  MMETSP1137-20121227|1654_1 204 QKKRVIVDFSSPNVAKEMHVGHLRSTIIGDTLCRLLTFCGHEV 246
                 5677899999************************999888887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (848 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       139  (0.0338859); expected 82.0 (0.02)
Passed bias filter:                      118  (0.0287665); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.63u 0.18s 00:00:00.81 Elapsed: 00:00:00.77
# Mc/sec: 1453.59
//
Query:       MMETSP1137-20121227|1655_1  [L=217]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (217 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       118  (0.0287665); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.17s 00:00:00.38 Elapsed: 00:00:00.35
# Mc/sec: 818.33
//
Query:       MMETSP1137-20121227|1656_1  [L=461]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (461 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        60  (0.014627); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.18s 00:00:00.50 Elapsed: 00:00:00.48
# Mc/sec: 1267.65
//
Query:       MMETSP1137-20121227|1657_1  [L=254]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (254 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        90  (0.0219405); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.13s 00:00:00.34 Elapsed: 00:00:00.34
# Mc/sec: 986.04
//
Query:       MMETSP1137-20121227|1658_1  [L=84]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (84 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        21  (0.00511945); expected 82.0 (0.02)
Passed bias filter:                       21  (0.00511945); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.14s 00:00:00.26 Elapsed: 00:00:00.26
# Mc/sec: 426.43
//
Query:       MMETSP1137-20121227|1659_1  [L=40]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (40 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                         4  (0.000975134); expected 82.0 (0.02)
Passed bias filter:                        4  (0.000975134); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.11s 00:00:00.22 Elapsed: 00:00:00.21
# Mc/sec: 251.41
//
Query:       MMETSP1137-20121227|1660_1  [L=160]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (160 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       164  (0.0399805); expected 82.0 (0.02)
Passed bias filter:                      136  (0.0331546); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.17s 00:00:00.35 Elapsed: 00:00:00.90
# Mc/sec: 234.65
//
Query:       MMETSP1137-20121227|1661_1  [L=380]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (380 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        56  (0.0136519); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.15s 00:00:00.42 Elapsed: 00:00:01.28
# Mc/sec: 391.84
//
Query:       MMETSP1137-20121227|1662_1  [L=779]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (779 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        69  (0.0168211); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.48u 0.16s 00:00:00.64 Elapsed: 00:00:00.45
# Mc/sec: 2284.88
//
Query:       MMETSP1137-20121227|1663_1  [L=423]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.8e-10   37.0   0.0    5.3e-10   36.5   0.0    1.1  1  TIGR00479 rumA: 23S rRNA (uracil-5-)-methyltransferase RumA
    0.00016   19.0   0.0    0.00024   18.5   0.0    1.1  1  TIGR03534 RF_mod_PrmC: protein-(glutamine-N5) methyltransferase, release factor-specific
    0.00058   16.8   0.0    0.00081   16.3   0.0    1.1  1  TIGR02085 meth_trns_rumB: 23S rRNA (uracil-5-)-methyltransferase RumB
     0.0037   14.2   0.0     0.0059   13.5   0.0    1.2  1  TIGR00536 hemK_fam: methyltransferase, HemK family
  ------ inclusion threshold ------
      0.015   12.8   0.0      0.025   12.1   0.0    1.2  1  TIGR00537 hemK_rel_arch: putative methylase
      0.025   12.0   0.0      0.038   11.4   0.0    1.2  1  TIGR00095 TIGR00095: RNA methyltransferase, RsmD family
       0.06   10.5   0.0      0.089    9.9   0.0    1.2  1  TIGR01983 UbiG: 3-demethylubiquinone-9 3-O-methyltransferase


Domain annotation for each model (and alignments):
>> TIGR00479  rumA: 23S rRNA (uracil-5-)-methyltransferase RumA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.5   0.0   9.1e-13   5.3e-10     291     375 ..     205     291 ..     195     296 .. 0.90

  Alignments for each domain:
  == domain 1    score: 36.5 bits;  conditional E-value: 9.1e-13
   TIGR00479 291 lqgeekvvDaycGvGtftlplAkqaksvvgvevvkesvekakrnAelngia..nveflageleevlpklskekisadkvllDPpRkG 375
                 l    +v++++   G  tl  A + ++vv v++ +++v++a+rnA+l g++   v +l++++ + + +  + + ++d v+lDPp  G
  MMETSP1137-20121227|1663_1 205 LARPLRVLNLFGYTGGSTLACAAGGAEVVHVDGARAAVKRAQRNAQLSGLEhaRVRYLTEDVMTYVQRAARRGDTFDGVVLDPPAFG 291
                 55556899****************************************98622689****************************766 PP

>> TIGR03534  RF_mod_PrmC: protein-(glutamine-N5) methyltransferase, release factor-specific
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.0   4.1e-07   0.00024     105     165 ..     222     288 ..     206     292 .. 0.90

  Alignments for each domain:
  == domain 1    score: 18.5 bits;  conditional E-value: 4.1e-07
   TIGR03534 105 alakelpdakviavDiseeAlkvarkNakrlglke..veflksdlleal....eekgkfdlivsNPP 165
                 +la     a+v+ vD  ++A+k a++Na+  gl++  v+ l  d+++ +    ++ ++fd +v  PP
  MMETSP1137-20121227|1663_1 222 TLACAAGGAEVVHVDGARAAVKRAQRNAQLSGLEHarVRYLTEDVMTYVqraaRRGDTFDGVVLDPP 288
                 67777889*************************9999********9999777677778*******99 PP

>> TIGR02085  meth_trns_rumB: 23S rRNA (uracil-5-)-methyltransferase RumB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0   1.4e-06   0.00081     234     315 ..     208     294 ..     192     304 .. 0.79

  Alignments for each domain:
  == domain 1    score: 16.3 bits;  conditional E-value: 1.4e-06
   TIGR02085 234 vkelwdlfcGvGGfglhcaapdikltGieieseaiaaakrsakelGlen..lsfaaldsakfaeaka...dvpelvlvnpprrGiGk 315
                 + ++ +lf   GG +l caa   ++  ++ +  a+  a+r a+  Gle+  +++ + d   +++  a   d+ + v+++pp  G G 
  MMETSP1137-20121227|1663_1 208 PLRVLNLFGYTGGSTLACAAGGAEVVHVDGARAAVKRAQRNAQLSGLEHarVRYLTEDVMTYVQRAArrgDTFDGVVLDPPAFGRGG 294
                 567789*****************************************9822455555766665543323488899999999988775 PP

>> TIGR00536  hemK_fam: methyltransferase, HemK family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   0.0     1e-05    0.0059     116     191 ..     209     288 ..     201     292 .. 0.87

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 1e-05
   TIGR00536 116 khilDlgtGsGcIalalAleipnaeviavDistdalavaeeNaeklklee.rveliqsnlleslakq.....kidlivsNPP 191
                 +++l+l+  +G   la+A+  +  ev  vD    a++ a++Na+  +le+ rv+ +  +++  ++ +      +d +v  PP
  MMETSP1137-20121227|1663_1 209 LRVLNLFGYTGGSTLACAAGGA--EVVHVDGARAAVKRAQRNAQLSGLEHaRVRYLTEDVMTYVQRAarrgdTFDGVVLDPP 288
                 68899999999999****9988..************************9867999999998888877777778888888888 PP

>> TIGR00537  hemK_rel_arch: putative methylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   4.2e-05     0.025      22      81 ..     210     272 ..     203     298 .. 0.74

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 4.2e-05
   TIGR00537  22 dvleiGaGtGlvairlkekgkkivatdinPfavkllkenaklnnve...ldvlesdlfenveg 81 
                 +vl++   tG  + +++  g+ +v +d + +avk +++na+l + e   +++l+ d++  v++
  MMETSP1137-20121227|1663_1 210 RVLNLFGYTGGSTLACAAGGAEVVHVDGARAAVKRAQRNAQLSGLEharVRYLTEDVMTYVQR 272
                 567776677888899999***********************9876533378889998887753 PP

>> TIGR00095  TIGR00095: RNA methyltransferase, RsmD family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   6.5e-05     0.038      70     133 ..     224     288 ..     207     297 .. 0.76

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 6.5e-05
   TIGR00095  70 ALsRgakkvvfveqdkkvaktlkeNlstlklskeqatvlndaeralavlakket.vfdiiylDPP 133
                 A + g ++vv v+  ++++k   +N ++  l++   ++l +++      a++ + +fd + lDPP
  MMETSP1137-20121227|1663_1 224 ACAAGGAEVVHVDGARAAVKRAQRNAQLSGLEHARVRYLTEDVMTYVQRAARRGdTFDGVVLDPP 288
                 44556788999*****************9999999999988877766666555559********* PP

>> TIGR01983  UbiG: 3-demethylubiquinone-9 3-O-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.0   0.00015     0.089      64     115 ..     222     275 ..     193     286 .. 0.78

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 0.00015
   TIGR01983  64 seslarlgaevtgiDlseelievAklhakkdplk..kieyelksveelaeeeke 115
                 + + a  gaev+ +D ++ +++ A+  a+ ++l+  +++y +++v + ++++++
  MMETSP1137-20121227|1663_1 222 TLACAAGGAEVVHVDGARAAVKRAQRNAQLSGLEhaRVRYLTEDVMTYVQRAAR 275
                 34568889*************************9999******99998877643 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (423 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       106  (0.0258411); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.33u 0.14s 00:00:00.47 Elapsed: 00:00:00.46
# Mc/sec: 1213.73
//
Query:       MMETSP1137-20121227|1664_1  [L=139]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.1e-07   26.6   0.0    1.3e-06   26.2   0.0    1.2  1  TIGR02189 GlrX-like_plant: glutaredoxin-like family
    1.5e-06   26.2   0.0    2.1e-06   25.7   0.0    1.2  1  TIGR02180 GRX_euk: glutaredoxin
    8.9e-06   23.4   0.0    1.3e-05   22.9   0.0    1.2  1  TIGR02190 GlrX-dom: glutaredoxin-family domain
  ------ inclusion threshold ------
      0.033   12.2   0.0      0.053   11.6   0.0    1.3  1  TIGR02183 GRXA: glutaredoxin, GrxA family


Domain annotation for each model (and alignments):
>> TIGR02189  GlrX-like_plant: glutaredoxin-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.2   0.0   1.2e-09   1.3e-06       3      74 ..      49     120 ..      47     128 .. 0.92

  Alignments for each domain:
  == domain 1    score: 26.2 bits;  conditional E-value: 1.2e-09
   TIGR02189   3 rlvsekavvifskssCClshvvkrLllelGvnPavveldkeaeakeiekallelgskeavPvvfvGGklvGg 74 
                 r v+ ++vvif+ s+C     v + l +lG+    v+ld++ e++++ kal++  ++   P+vfv G+ v  
  MMETSP1137-20121227|1664_1  49 RHVASSTVVIFGSSGCLTRTRVAEALEDLGMPYYSVDLDHHLEGHGLRKALAKRVGNIRTPAVFVRGQHVRN 120
                 668899***********************************************8999**********98865 PP

>> TIGR02180  GRX_euk: glutaredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.7   0.0     2e-09   2.1e-06       1      65 [.      56     118 ..      56     133 .. 0.92

  Alignments for each domain:
  == domain 1    score: 25.7 bits;  conditional E-value: 2e-09
   TIGR02180   1 VvvfsKsyCpYckkakelLkklkvkkalevveldklengselqdyLkeltgqrtVPrifingkfi 65 
                 Vv+f  s C   +++ e+L++l +   ++ v+ld++ +g+ l+++L +  g+   P +f++g+++
  MMETSP1137-20121227|1664_1  56 VVIFGSSGCLTRTRVAEALEDLGMP--YYSVDLDHHLEGHGLRKALAKRVGNIRTPAVFVRGQHV 118
                 89******************99888..************************************97 PP

>> TIGR02190  GlrX-dom: glutaredoxin-family domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.9   0.0   1.2e-08   1.3e-05       7      68 ..      53     118 ..      48     127 .. 0.87

  Alignments for each domain:
  == domain 1    score: 22.9 bits;  conditional E-value: 1.2e-08
   TIGR02190   7 kesvsvftkpGCPfCakakavLkekGldfeeivLgkdirtrslr.av...tGattvPqvfinGkli 68 
                   +v++f   GC    +  ++L++ G+ +  + L+++++++ lr a+    G+   P vf+ G+++
  MMETSP1137-20121227|1664_1  53 SSTVVIFGSSGCLTRTRVAEALEDLGMPYYSVDLDHHLEGHGLRkALakrVGNIRTPAVFVRGQHV 118
                 5689************************************999844433358999*********97 PP

>> TIGR02183  GRXA: glutaredoxin, GrxA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   5.1e-05     0.053       2      68 ..      56     118 ..      55     133 .. 0.77

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 5.1e-05
   TIGR02183   2 vvifGrpgcpycvrakqlaeklakeladfefryvdihaeGis.kadlektvGkpvetvpqifvdekav 68 
                 vvifG  gc+   r  +  e l       +   +d h eG   ++ l+k+vG      p +fv  ++v
  MMETSP1137-20121227|1664_1  56 VVIFGSSGCLTRTRVAEALEDLGMPYYSVD---LDHHLEGHGlRKALAKRVGNI--RTPAVFVRGQHV 118
                 89********99998888887776655544...466777754256799999975..359999999988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (139 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       100  (0.0243784); expected 82.0 (0.02)
Passed bias filter:                       98  (0.0238908); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.15u 0.14s 00:00:00.29 Elapsed: 00:00:00.30
# Mc/sec: 611.55
//
Query:       MMETSP1137-20121227|1666_1  [L=309]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (309 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        57  (0.0138957); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.15s 00:00:00.38 Elapsed: 00:00:00.48
# Mc/sec: 849.68
//
Query:       MMETSP1137-20121227|1667_1  [L=341]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0097   12.7   0.0      0.013   12.3   0.0    1.1  1  TIGR04095 dnd_restrict_1: DNA phosphorothioation system restriction enzyme


Domain annotation for each model (and alignments):
>> TIGR04095  dnd_restrict_1: DNA phosphorothioation system restriction enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.3   0.0   3.2e-06     0.013       7     145 ..     125     264 ..     118     295 .. 0.70

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 3.2e-06
   TIGR04095   7 lelrdyqkeaikaWfk.....nngrGilkmatGtGktltaLalvskl.aekikslvvvvvvPykhLveqWakeaekFgle.pilayesvsrWqkelsekleelsskakkllliittnatlkeekFqsqlrllkkkllliaDeahnl 145
                  ++++yq ++++ W++       g Gil+   G Gktl a+al+++l a ++     +vv+P    ++ W+ ++ +F  +  +l + ++++  +e+ + l++l ++++  +++++  +++  +   + lr++      + Deah l
  MMETSP1137-20121227|1667_1 125 CKMHNYQLDGLR-WAAgllqhGTGGGILADEMGLGKTLQAIALMAHLdAATSAGCRHLVVAPLST-ISGWTDQLSRFYPSlTVLRHTGTAASRAEARAGLARLGLGQS--CALLASYESVLADG--DSLRKCGGWSCAVIDEAHRL 264
                 577888888876.5432221156889*********************65666778899999*876.678999999996441455666677777777777777666543..44444444444443..55666666666777777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (341 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        93  (0.0226719); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.30u 0.16s 00:00:00.46 Elapsed: 00:00:00.32
# Mc/sec: 1406.51
//
Query:       MMETSP1137-20121227|1668_1  [L=328]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.4e-24   82.1   1.5    6.1e-22   75.3   1.0    2.0  1  TIGR00834 ae: anion exchange protein


Domain annotation for each model (and alignments):
>> TIGR00834  ae: anion exchange protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.3   1.0   1.5e-25   6.1e-22     634     887 ..      67     300 ..      57     314 .. 0.86

  Alignments for each domain:
  == domain 1    score: 75.3 bits;  conditional E-value: 1.5e-25
   TIGR00834 634 eargWfipPlgekkpfpv...WmmlaaalPalLvliLiflesqittlivskkerklkkGsGfhLDLllvvalgglaallglPwlsaatvrsvthinaLtveskasaPGekakiqevkeqrvtGllvavlvGlsillepiLkriPlavLfGifLymGvtsLsGiqlfdrllLllmPlkyqPdviyvkrvktrrihlftllqilclalLWvvkstaaslalPfvliltvplrklllpklfsekelklLDkedakkkfde 887
                 ++r Wf+  ++ +++  +   +++ + al al +  + ++++ i +l+ + +e klk+G  +h   + +++  g+a  +g P+++ +  +s + + aLt   +  aP                l+  +l+ l +    iL+ iP a++ G+ ++ Gv  +    l++r  Lll P+   P      + +   ++++t+lq+l+la  W+++++++ l + ++++ ++p r   lp lf++ +l +LD+  + ++ ++
  MMETSP1137-20121227|1668_1  67 DHRPWFVWSFEGSSDACIdilYTLGLGALIALPISFFFYMDQNISSLLCQLPELKLKRGHYYHSSCFAIGIFNGVAPAFGCPFVTGSLPQSPQMVRALT--DEXLAP----------------LVCHALLILPLAFPWILESIPEAAMNGLLMFSGVEGIIATDLWQRFTLLLAPKHNLPI-----KWRSTSMRSYTCLQLLVLATCWIIQVSPFGLFVSLIIVSLIPFRIFALPCLFKDADLLVLDEAVDGVRTED 300
                 569999999988776654112556677777888889999********************************************9999888888888887..445566................788888899999****************************************888884.....45778899*****************************************************6533333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (328 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       101  (0.0246221); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.30u 0.17s 00:00:00.47 Elapsed: 00:00:00.49
# Mc/sec: 883.52
//
Query:       MMETSP1137-20121227|1669_1  [L=110]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.038    9.8   0.0      0.043    9.7   0.0    1.1  1  TIGR00870 trp: transient-receptor-potential calcium channel protein


Domain annotation for each model (and alignments):
>> TIGR00870  trp: transient-receptor-potential calcium channel protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.0   1.1e-05     0.043     131     156 ..      24      49 ..      12      67 .. 0.91

  Alignments for each domain:
  == domain 1    score: 9.7 bits;  conditional E-value: 1.1e-05
   TIGR00870 131 gitalilAihkqnyeivklLlekgas 156
                   t+l+ A+ + + ei k+L++ ga+
  MMETSP1137-20121227|1669_1  24 KMTPLHWAATCGSTEICKMLIDAGAR 49 
                 57**********************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (110 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        97  (0.023647); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.15u 0.13s 00:00:00.28 Elapsed: 00:00:00.34
# Mc/sec: 427.02
//
Query:       MMETSP1137-20121227|1670_1  [L=1017]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.11   10.5   4.4        1.3    7.0   0.1    2.3  2  TIGR02894 DNA_bind_RsfA: transcription factor, RsfA family


Domain annotation for each model (and alignments):
>> TIGR02894  DNA_bind_RsfA: transcription factor, RsfA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   0.1   0.00032       1.3      97     155 ..     198     257 ..     174     262 .. 0.78
   2 ?    4.2   0.7    0.0022       9.1      91     147 ..     322     378 ..     314     385 .. 0.85

  Alignments for each domain:
  == domain 1    score: 7.0 bits;  conditional E-value: 0.00032
   TIGR02894  97 eeaek.lrkekeklkeeleslqkrneeLekeleklkkkksvieedyetlikimdrarkla 155
                  ++e+ +r++k   ++++++++  + +L+k+++ l++++ ++++ y+ +i+ m+r   + 
  MMETSP1137-20121227|1670_1 198 ARMERtFREKKVPAHTSNRNWNYMVLNLRKRVADLRREHPLVANHYDHIISEMHRRSCMF 257
                 4444404444555678899999999****************************9976654 PP

  == domain 2    score: 4.2 bits;  conditional E-value: 0.0022
   TIGR02894  91 nlketleeaeklrkekeklkeeleslqkrneeLekeleklkkkksvieedyetliki 147
                   k++++e++++r +++ l + l++   +++ Le+++ +l ++ s ++e++e  i  
  MMETSP1137-20121227|1670_1 322 YRKREMQENAEIRAQRDDLSDILKHHTSTIDLLERQMGRLSTEYSKLRENHERTIAD 378
                 45667788999********************************99999999877765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1017 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       115  (0.0280351); expected 82.0 (0.02)
Passed bias filter:                       98  (0.0238908); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.66u 0.16s 00:00:00.82 Elapsed: 00:00:01.22
# Mc/sec: 1100.27
//
Query:       MMETSP1137-20121227|1672_1  [L=124]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (124 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        92  (0.0224281); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.18s 00:00:00.32 Elapsed: 00:00:00.70
# Mc/sec: 233.81
//
Query:       MMETSP1137-20121227|1673_1  [L=76]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (76 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        82  (0.0199902); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.33
# Mc/sec: 303.97
//
Query:       MMETSP1137-20121227|1674_1  [L=364]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (364 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       145  (0.0353486); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.15s 00:00:00.43 Elapsed: 00:00:00.69
# Mc/sec: 696.29
//
Query:       MMETSP1137-20121227|1675_1  [L=431]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (431 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        91  (0.0221843); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.12s 00:00:00.42 Elapsed: 00:00:00.43
# Mc/sec: 1322.96
//
Query:       MMETSP1137-20121227|1676_1  [L=310]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      1e-05   22.4   0.1    1.4e-05   21.9   0.1    1.2  1  TIGR03466 HpnA: hopanoid-associated sugar epimerase
     0.0043   13.9   0.0     0.0066   13.2   0.0    1.2  1  TIGR03589 PseB: UDP-N-acetylglucosamine 4,6-dehydratase


Domain annotation for each model (and alignments):
>> TIGR03466  HpnA: hopanoid-associated sugar epimerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.9   0.1     7e-09   1.4e-05       2      69 ..      43     115 ..      42     121 .. 0.83

  Alignments for each domain:
  == domain 1    score: 21.9 bits;  conditional E-value: 7e-09
   TIGR03466   2 kvlvtGatGFvGsavvrllleeGeev..rvlvrktsdrrnlee..ldvE.iveGdlkdeaslkkalkGcealf 69 
                 +v+v Ga+G  G+av r++l++ ++   r +vr+++++  l +  ++++ +v  d++d++++++a++Gc+a++
  MMETSP1137-20121227|1676_1  43 QVFVSGAGGQTGQAVFRKMLARPNDFrpRGVVRSQASKDALVQsgVPANfVVIADVTDRHAVQEAMSGCDAVV 115
                 69******************998776226899*999999886512666646789****************985 PP

>> TIGR03589  PseB: UDP-N-acetylglucosamine 4,6-dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   0.0   3.2e-06    0.0066       6      91 ..      43     127 ..      39     132 .. 0.76

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 3.2e-06
   TIGR03589   6 silitGgtGsfGkkfikkllekykvkkiiiysr.delkqfelqqkfeedklrffiGdvrdkerleraledvdlvvhaaalkqvpaae 91 
                 +++++G+ G  G++  +k+l + +  +     r +  k   +q+  +++     i dv d++ +++a+++ d vv  ++ k  p+ e
  MMETSP1137-20121227|1676_1  43 QVFVSGAGGQTGQAVFRKMLARPNDFRPRGVVRsQASKDALVQSGVPANF--VVIADVTDRHAVQEAMSGCDAVVICTSAKPAPTGE 127
                 5899*********9999999876444433333303445555555555554..479************************9*999988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (310 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       106  (0.0258411); expected 82.0 (0.02)
Passed bias filter:                       99  (0.0241346); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.27u 0.17s 00:00:00.44 Elapsed: 00:00:00.56
# Mc/sec: 730.65
//
Query:       MMETSP1137-20121227|1677_1  [L=172]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (172 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       113  (0.0275475); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.13s 00:00:00.31 Elapsed: 00:00:00.32
# Mc/sec: 709.44
//
Query:       MMETSP1137-20121227|1678_1  [L=222]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (222 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        34  (0.00828864); expected 82.0 (0.02)
Passed bias filter:                       33  (0.00804486); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.13s 00:00:00.33 Elapsed: 00:00:00.33
# Mc/sec: 887.93
//
Query:       MMETSP1137-20121227|1679_1  [L=1210]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1210 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       115  (0.0280351); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.69u 0.16s 00:00:00.85 Elapsed: 00:00:00.63
# Mc/sec: 2535.03
//
Query:       MMETSP1137-20121227|1680_1  [L=228]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (228 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        72  (0.0175524); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.16s 00:00:00.35 Elapsed: 00:00:00.30
# Mc/sec: 1003.12
//
Query:       MMETSP1137-20121227|1681_1  [L=71]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (71 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        25  (0.00609459); expected 82.0 (0.02)
Passed bias filter:                       23  (0.00560702); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.25
# Mc/sec: 374.85
//
Query:       MMETSP1137-20121227|1682_1  [L=216]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (216 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.17s 00:00:00.37 Elapsed: 00:00:00.48
# Mc/sec: 593.95
//
Query:       MMETSP1137-20121227|1683_1  [L=465]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (465 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        65  (0.0158459); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.15s 00:00:00.48 Elapsed: 00:00:00.44
# Mc/sec: 1394.88
//
Query:       MMETSP1137-20121227|1685_1  [L=502]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (502 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       147  (0.0358362); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.14s 00:00:00.48 Elapsed: 00:00:00.65
# Mc/sec: 1019.36
//
Query:       MMETSP1137-20121227|1686_1  [L=221]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (221 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        38  (0.00926377); expected 82.0 (0.02)
Passed bias filter:                       29  (0.00706972); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.17s 00:00:00.36 Elapsed: 00:00:00.26
# Mc/sec: 1121.91
//
Query:       MMETSP1137-20121227|1687_1  [L=162]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.3e-12   44.9   0.0    3.4e-12   44.3   0.0    1.2  1  TIGR00369 unchar_dom_1: uncharacterized domain 1
    5.1e-11   40.6   0.0    6.9e-11   40.2   0.0    1.2  1  TIGR02286 PaaD: phenylacetic acid degradation protein PaaD


Domain annotation for each model (and alignments):
>> TIGR00369  unchar_dom_1: uncharacterized domain 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.3   0.0   1.7e-15   3.4e-12      12     105 ..      31     124 ..      21     131 .. 0.89

  Alignments for each domain:
  == domain 1    score: 44.3 bits;  conditional E-value: 1.7e-15
   TIGR00369  12 eledeelevempvkertlqpigsvHGGvlaaLadtagslaaaltkeegkavvtlelnvnylrpareG.klrAiakvvhlGrqtgvaeieivdeqg 105
                 ++  + +  +++v+e + +++g +HGG++++L+d +g ++a l+k    a v +e+n ++  +ar G  +   + v++ Gr++g  e++i+   +
  MMETSP1137-20121227|1687_1  31 HAVPGSVLCKLQVREPLANNFGTLHGGAISTLVDVVG-TIALLSKDMQRAGVSVEMNQTFCSAARIGeWVWVHGAVLKYGRRLGFTEVRIFSRGE 124
                 555566677899*************************.8899999999*******************89*********************98765 PP

>> TIGR02286  PaaD: phenylacetic acid degradation protein PaaD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.2   0.0   3.4e-14   6.9e-11       6     101 ..      27     124 ..      22     131 .. 0.90

  Alignments for each domain:
  == domain 1    score: 40.2 bits;  conditional E-value: 3.4e-14
   TIGR02286   6 ikilelspgearvaltvredmlnghgtahGGllfalADsa..FAlacNsageaaVAaevtidflrparagevlvAeAkevsrsgrtgvydvevrneeg 101
                 ++ +++ pg+   +l+vre   n +gt hGG + +l D +   Al +   + a V  e++ +f ++ar ge +  +  + + ++r g ++v++ ++++
  MMETSP1137-20121227|1687_1  27 MQCVHAVPGSVLCKLQVREPLANNFGTLHGGAISTLVDVVgtIALLSKDMQRAGVSVEMNQTFCSAARIGEWVWVHGAVLKYGRRLGFTEVRIFSRGE 124
                 88999*********************************8733788888889999***************************************97554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (162 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       114  (0.0277913); expected 82.0 (0.02)
Passed bias filter:                      110  (0.0268162); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.20u 0.14s 00:00:00.34 Elapsed: 00:00:00.30
# Mc/sec: 712.74
//
Query:       MMETSP1137-20121227|1688_1  [L=117]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (117 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        78  (0.0190151); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.19s 00:00:00.35 Elapsed: 00:00:00.51
# Mc/sec: 302.80
//
Query:       MMETSP1137-20121227|1689_1  [L=484]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (484 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        94  (0.0229157); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.17s 00:00:00.50 Elapsed: 00:00:00.44
# Mc/sec: 1451.88
//
Query:       MMETSP1137-20121227|1690_1  [L=204]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.6e-24   84.1   0.0    2.3e-24   83.6   0.0    1.2  1  TIGR00399 metG_C_term: methionine--tRNA ligase, beta subunit
    2.1e-09   35.2   0.0    2.9e-09   34.7   0.0    1.2  1  TIGR02222 chap_CsaA: export-related chaperone CsaA
    5.7e-07   25.9   0.0    7.6e-07   25.5   0.0    1.1  1  TIGR00472 pheT_bact: phenylalanine--tRNA ligase, beta subunit


Domain annotation for each model (and alignments):
>> TIGR00399  metG_C_term: methionine--tRNA ligase, beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.6   0.0   1.7e-27   2.3e-24      10     137 ..      17     143 ..       6     145 .. 0.77

  Alignments for each domain:
  == domain 1    score: 83.6 bits;  conditional E-value: 1.7e-27
   TIGR00399  10 lseeakkkekkkeeekaeeekkeeitiddfekvdlrvakvkkaerveksdkLlkLklDlGeek.rqvvsGiaeaYtpeeLvgkkvivvaNLkPaKlfGvkSeGmilaaeddgk.dlallspdkevkaGer 137
                 +++eak++++  ++     +    +   d++  d+rv+ +++a++ ++s kL   ++DlGe + r v+sG+a++   e++ g  v+v++NLkP+K+ G++S+Gm+l a d +k  l  + p  ++ aG r
  MMETSP1137-20121227|1690_1  17 AAKEAKQAAAAAKQPAGGADGDRDV---DISWADIRVGVITDAKAHPESPKLYVETIDLGEPEpRTVLSGLAAHMPLEKVKGARVVVICNLKPRKMAGIESQGMVLCASDAEKtALDFVVPPPDAPAGAR 143
                 2233333333333333333333333...445679***************************999********************************************9999856667777777888776 PP

>> TIGR02222  chap_CsaA: export-related chaperone CsaA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.7   0.0   2.1e-12   2.9e-09       6     103 ..      45     141 ..      41     145 .. 0.85

  Alignments for each domain:
  == domain 1    score: 34.7 bits;  conditional E-value: 2.1e-12
   TIGR02222   6 kvdlrvGriveaedfpkarkPayklkvdlGeelGvkkssaqitklykkeelvgrlvvavvnfppkriaglksevlvlGvideege.vvllqpdrevklG 103
                   d+rvG i +a+ +p++ k  y+ ++dlG e   ++  + ++++   e++ g +vv+++n+ p+++ag++s+ +vl + d+e++ + +++p  + + G
  MMETSP1137-20121227|1690_1  45 WADIRVGVITDAKAHPESPK-LYVETIDLG-EPEPRTVLSGLAAHMPLEKVKGARVVVICNLKPRKMAGIESQGMVLCASDAEKTaLDFVVPPPDAPAG 141
                 579**************987.58889****.77889999999***********************************9998776414456666666666 PP

>> TIGR00472  pheT_bact: phenylalanine--tRNA ligase, beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.5   0.0   5.5e-10   7.6e-07      45     123 ..      47     122 ..      36     126 .. 0.90

  Alignments for each domain:
  == domain 1    score: 25.5 bits;  conditional E-value: 5.5e-10
   TIGR00472  45 gvvvGkvlevekhPnadkLkvckVdigekellqivcgaknveagkkVvvAlegAkLpnglkIkksklrGveSeGM.lCSl 123
                  + vG + + + hP++ kL+v ++d+ge e++++++g   +   +kV    +gA +     +k++k+ G+eS+GM lC++
  MMETSP1137-20121227|1690_1  47 DIRVGVITDAKAHPESPKLYVETIDLGEPEPRTVLSGLAAHMPLEKV----KGARVVVICNLKPRKMAGIESQGMvLCAS 122
                 589**********************************9999999997....8999999999**************44554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (204 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        95  (0.0231594); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.21u 0.17s 00:00:00.38 Elapsed: 00:00:00.28
# Mc/sec: 961.63
//
Query:       MMETSP1137-20121227|1691_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        27  (0.00658216); expected 82.0 (0.02)
Passed bias filter:                       25  (0.00609459); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.17s 00:00:00.29 Elapsed: 00:00:00.27
# Mc/sec: 254.20
//
Query:       MMETSP1137-20121227|1692_1  [L=127]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (127 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       171  (0.041687); expected 82.0 (0.02)
Passed bias filter:                      125  (0.0304729); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.17s 00:00:00.33 Elapsed: 00:00:01.12
# Mc/sec: 149.67
//
Query:       MMETSP1137-20121227|1693_1  [L=269]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (269 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        46  (0.011214); expected 82.0 (0.02)
Passed bias filter:                       44  (0.0107265); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.16s 00:00:00.38 Elapsed: 00:00:00.46
# Mc/sec: 771.85
//
Query:       MMETSP1137-20121227|1695_1  [L=285]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (285 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        48  (0.0117016); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.17s 00:00:00.42 Elapsed: 00:00:00.38
# Mc/sec: 989.92
//
Query:       MMETSP1137-20121227|1696_1  [L=193]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (193 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        77  (0.0187713); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.14s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 878.41
//
Query:       MMETSP1137-20121227|1697_1  [L=377]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (377 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       106  (0.0258411); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.22s 00:00:00.51 Elapsed: 00:00:00.39
# Mc/sec: 1275.89
//
Query:       MMETSP1137-20121227|1698_1  [L=299]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0031   14.5   0.2     0.0043   14.1   0.1    1.3  1  TIGR03640 cas1_DVULG: CRISPR-associated endonuclease Cas1, subtype I-C/DVULG
  ------ inclusion threshold ------
      0.041   10.6   0.0      0.051   10.3   0.0    1.1  1  TIGR04093 cas1_CYANO: CRISPR-associated endonuclease Cas1, subtype CYANO


Domain annotation for each model (and alignments):
>> TIGR03640  cas1_DVULG: CRISPR-associated endonuclease Cas1, subtype I-C/DVULG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.1   2.1e-06    0.0043      59     136 ..     135     213 ..     126     275 .. 0.80

  Alignments for each domain:
  == domain 1    score: 14.1 bits;  conditional E-value: 2.1e-06
   TIGR03640  59 aeegislvfltenGrflarvegpvsGnvlLRraqyraaddeeksleiarslvagKiknarqvllra..lRdaeeeeeaea 136
                 +++g+ ++fl+++Gr+  ++ ++ +  v +Rr++ ++ ++ e+++  a + v g ++   ++ ++a  lRd+ ++e +++
  MMETSP1137-20121227|1698_1 135 GQRGVVVSFLEDSGRYAVKLDSQAERSVNVRRENLQLQSSVESAAPEAVKAVSGALAQLTALEMKAaeLRDTLNAE-QKT 213
                 578999************************************************9998776655541146654433.333 PP

>> TIGR04093  cas1_CYANO: CRISPR-associated endonuclease Cas1, subtype CYANO
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   2.5e-05     0.051      60     138 ..     135     211 ..      86     248 .. 0.73

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 2.5e-05
   TIGR04093  60 lekkivihflsklGkykGslvPeltrntllrlaqyraaeekeqrleiareivkgklknsrtlllRrsrkesedtlidsi 138
                  ++++v+ fl+ +G+y  +l  + +r   +r  + + + + e ++  a + v+g l    t l  + ++   dtl    
  MMETSP1137-20121227|1698_1 135 GQRGVVVSFLEDSGRYAVKLDSQAERSVNVRRENLQLQSSVESAAPEAVKAVSGALAQL-TALEMKAAE-LRDTLNAEQ 211
                 4799**********************************999999998888999998754.444444443.244554444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (299 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       168  (0.0409556); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.26u 0.12s 00:00:00.38 Elapsed: 00:00:00.68
# Mc/sec: 580.36
//
Query:       MMETSP1137-20121227|1699_1  [L=273]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.2e-17   61.4   0.5    2.9e-17   61.0   0.3    1.2  1  TIGR01830 3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase
    3.4e-14   50.7   0.3    4.6e-14   50.3   0.2    1.2  1  TIGR02415 23BDH: acetoin reductases
    3.3e-13   47.5   0.9    9.9e-13   46.0   0.6    1.6  1  TIGR01832 kduD: 2-deoxy-D-gluconate 3-dehydrogenase
      2e-11   41.5   1.1    4.3e-11   40.4   0.7    1.6  1  TIGR01963 PHB_DH: 3-hydroxybutyrate dehydrogenase
    2.2e-10   38.4   0.5    3.5e-10   37.8   0.4    1.3  1  TIGR01829 AcAcCoA_reduct: acetoacetyl-CoA reductase
    3.4e-10   36.8   0.1    4.1e-10   36.5   0.1    1.1  1  TIGR02632 RhaD_aldol-ADH: rhamnulose-1-phosphate aldolase/alcohol dehydrogenase
      2e-08   31.8   2.5      2e-06   25.3   0.1    2.1  2  TIGR03971 SDR_subfam_1: oxidoreductase, SDR family
    1.9e-07   28.5   0.3    3.1e-07   27.9   0.2    1.3  1  TIGR03206 benzo_BadH: 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase
    1.2e-05   22.6   0.1    1.4e-05   22.4   0.1    1.2  1  TIGR03325 BphB_TodD: cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase
    2.9e-05   20.9   0.0    4.6e-05   20.3   0.0    1.3  1  TIGR03466 HpnA: hopanoid-associated sugar epimerase
    8.7e-05   19.8   0.6    0.00018   18.8   0.4    1.6  1  TIGR01831 fabG_rel: putative 3-oxoacyl-(acyl-carrier-protein) reductase
    0.00021   18.3   4.3     0.0069   13.3   0.4    3.3  4  TIGR00521 coaBC_dfp: phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase
    0.00081   16.1   0.1     0.0011   15.6   0.0    1.2  1  TIGR01179 galE: UDP-glucose 4-epimerase
     0.0033   13.0   0.1      0.004   12.7   0.1    1.1  1  TIGR01408 Ube1: ubiquitin-activating enzyme E1
     0.0035   14.6   0.4       0.09   10.0   0.4    2.7  2  TIGR01500 sepiapter_red: sepiapterin reductase
     0.0075   13.5   1.0      0.014   12.7   0.6    1.4  1  TIGR02356 adenyl_thiF: thiazole biosynthesis adenylyltransferase ThiF
     0.0089   13.5   0.1      0.015   12.8   0.0    1.3  1  TIGR01470 cysG_Nterm: siroheme synthase, N-terminal domain
  ------ inclusion threshold ------
      0.016   11.9   0.4      0.031   10.9   0.3    1.4  1  TIGR02823 oxido_YhdH: putative quinone oxidoreductase, YhdH/YhfP family
       0.02   11.8   0.1      0.027   11.4   0.0    1.2  1  TIGR01214 rmlD: dTDP-4-dehydrorhamnose reductase
       0.02   12.2   0.0      0.085   10.2   0.0    1.9  3  TIGR01289 LPOR: light-dependent protochlorophyllide reductase


Domain annotation for each model (and alignments):
>> TIGR01830  3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.0   0.3   1.4e-19   2.9e-17       1     192 [.      41     231 ..      41     267 .. 0.85

  Alignments for each domain:
  == domain 1    score: 61.0 bits;  conditional E-value: 1.4e-19
   TIGR01830   1 alvtGasrgiGkaiakklakegakvviterskeekaeelaeelkeagvkaaavkldvsdeeevkelveeveeelgeidilvnnAGitrD..klllrmkeedwdevikvnLkgvfnvtkavlkkmikkrsGriinissvvgl.....lGnagqanY..aasKaGligltkslakElasrnitvnavaPGfietdmteklsek 192
                 +l+tG++rg+G +iak+l ++ga+ ++  r++       + el + g+k ++  +dv+de++vk+++e++e+    +di++nnAG   D  + + ++  e+  ++i+v   g  +v+ av  +   +   ++i i+s +g      + n+    Y    s+a    +   +++El s++i v  + PGf +t mt+k +e 
  MMETSP1137-20121227|1699_1  41 VLLTGGNRGLGFEIAKELVAQGAETIVIGRRS-------SPELDALGAKQIIQGVDVQDEASVKKAIEQIEA---AVDIIINNAGYFPDieESMDNLVYEEQLKMIDVCALGPLRVSAAVRAAKKLNEGAKVIIITSQAGScewrfTQNPDGGDYghHMSRAACNIMGVLMSQELKSEGIPVVLIHPGFNKTGMTAKYKEI 231
                 689*********************99996644.......5689999999********************998...79********998843456677788888999*********9998887777777789********972222245666666622679************************************99884 PP

>> TIGR02415  23BDH: acetoin reductases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.3   0.2   2.3e-16   4.6e-14       3     192 ..      41     229 ..      39     261 .. 0.85

  Alignments for each domain:
  == domain 1    score: 50.3 bits;  conditional E-value: 2.3e-16
   TIGR02415   3 alvtGaaqGiGkaiaerLakdGfavavadlneetaketakelkekgtkavavkldvsdkseveeaveqaveklGeldvlvnnaGv..alvtpileiteeeleklynvnvkgvlfGiqaaaekfkklkhkGkiinaasiagv.....egspelsays..stkfavrgltqtaakeLakkgitvnayaPGivktemreeid 192
                  l+tG+ +G+G +ia+ L++ G + +v        ++   el++ g k ++  +dv+d ++v++a+eq  +    +d+++nnaG   +  ++++++  ee  k+ +v   g l  + aa+++ kkl+++ k+i  +s+ag      + +p  + y    ++ a   +    ++eL ++gi v    PG  kt m+++ +
  MMETSP1137-20121227|1699_1  41 VLLTGGNRGLGFEIAKELVAQGAETIVIG------RRSSPELDALGAKQIIQGVDVQDEASVKKAIEQIEA---AVDIIINNAGYfpDIEESMDNLVYEEQLKMIDVCALGPL-RVSAAVRAAKKLNEGAKVIIITSQAGScewrfTQNPDGGDYGhhMSRAACNIMGVLMSQELKSEGIPVVLIHPGFNKTGMTAKYK 229
                 699*********************99975......55678999************************9987...57********83345789999888888889999999987.69***********************9732222457788888632589999999999************************98764 PP

>> TIGR01832  kduD: 2-deoxy-D-gluconate 3-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.0   0.6   4.8e-15   9.9e-13       2     193 ..      35     227 ..      34     232 .. 0.72

  Alignments for each domain:
  == domain 1    score: 46.0 bits;  conditional E-value: 4.8e-15
   TIGR01832   2 sleGkvalvtGantGlGqgiavglaeaGadivgvgiselsetqekvealGrkflslkadladeeaakalvdeaveeagkidilvnnaGiirr.edave.fsekdwddvlnvnlka.vfllsqavakkllkqGrkgkiiniasll.s....fq....GGirvpsytasksavaGltkllanewakkginvnaiaPGyletnntea 193
                 sl+Gk++l+tG n+GlG  ia  l + Ga+ + +g+++  e    ++alG+k     +d++de+++k+ ++++ +    +di++nnaG     e++++ +  ++  ++++v     + + +   a k l++G  +k+i i+s   s    f     GG      + +  +++G   l+++e+ ++gi v  i PG+ +t  t++
  MMETSP1137-20121227|1699_1  35 SLKGKRVLLTGGNRGLGFEIAKELVAQGAETIVIGRRSSPE----LDALGAKQIIQGVDVQDEASVKKAIEQIEA---AVDIIINNAGYFPDiEESMDnLVYEEQLKMIDVCALGpLRVSAAVRAAKKLNEG--AKVIIITSQAgScewrFTqnpdGGDYGHHMSRAACNIMG--VLMSQELKSEGIPVVLIHPGFNKTGMTAK 227
                 79*********************************999887....6899****************9977776544...47********98542444432555566667777544404444444466777777..899999886422222243122244444444444444555..58999999999999999999999988876 PP

>> TIGR01963  PHB_DH: 3-hydroxybutyrate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.4   0.7   2.1e-13   4.3e-11       2     140 ..      39     170 ..      38     227 .. 0.85

  Alignments for each domain:
  == domain 1    score: 40.4 bits;  conditional E-value: 2.1e-13
   TIGR01963   2 kvalvtGaasGiglaiakelaaaGakvvvndleeeaaeaaakeleeaggevlalkadvtkeeeiadlieavaaefgsldiLvnnAGi..qhvapieefptekfekiiavnltsafhtiraalpimkkqgwG.riiniasvhg 140
                 k +l+tG + G+g++iakel+a+Ga+ +v + ++      + el + g++ + + +dv +e+++++ ie+++a   ++di++nnAG    + + +++   e+  k+i+v   ++++++ aa++  kk + G ++i i+s  g
  MMETSP1137-20121227|1699_1  39 KRVLLTGGNRGLGFEIAKELVAQGAETIVIGRRS------SPELDALGAKQIIQGVDVQDEASVKKAIEQIEA---AVDIIINNAGYfpDIEESMDNLVYEEQLKMIDVCALGPLRVS-AAVRAAKKLNEGaKVIIITSQAG 170
                 789**************************98764......5678889999***************88888875...68********743567889999999999**********9976.56777788777779999999877 PP

>> TIGR01829  AcAcCoA_reduct: acetoacetyl-CoA reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.8   0.4   1.7e-12   3.5e-10       4     205 ..      42     244 ..      39     269 .. 0.76

  Alignments for each domain:
  == domain 1    score: 37.8 bits;  conditional E-value: 1.7e-12
   TIGR01829   4 lvtGglgGiGtaickrlakdGykvvanvapneerakewlqekevegfdvavvkadvssfeeakaavakveaelGpvdvlvnnaGitrd..avfkkmtkeqWeevidtnlnsvfnvtrpviegmlergfGriinissvnGl.kGqfGq......anysaakaGliGftkalaqegakkgvtvnviaPGyiatemvkavre..dvlkkivaqiPv 205
                 l+tGg +G+G +i+k+l+++G + +   +   + +       ++ g + ++  +dv++  + k+a++++ea+   vd+++nnaG   d  + +  + +e+  ++id+   + + v   v ++ + ++  ++i i+s  G    +f q        +  ++a    +   ++qe  ++g+ v  i PG+ +t m+++ +e  ++  ++  ++  
  MMETSP1137-20121227|1699_1  42 LLTGGNRGLGFEIAKELVAQGAETIVIGRRS-SPE------LDALGAKQIIQGVDVQDEASVKKAIEQIEAA---VDIIINNAGYFPDieESMDNLVYEEQLKMIDVCALGPLRVSAAVRAAKKLNEGAKVIIITSQAGScEWRFTQnpdggdYGHHMSRAACNIMGVLMSQELKSEGIPVVLIHPGFNKTGMTAKYKEiwEIEGAVDPSVGA 244
                 89*******************9877655433.333......3344444456789999*99******999985...8*********988335688888999999*****99*********9988888888999999988852334444111100445677888888888899**********************99887744455555555555 PP

>> TIGR02632  RhaD_aldol-ADH: rhamnulose-1-phosphate aldolase/alcohol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.5   0.1     2e-12   4.1e-10     411     557 ..      35     171 ..      23     246 .. 0.76

  Alignments for each domain:
  == domain 1    score: 36.5 bits;  conditional E-value: 2e-12
   TIGR02632 411 elarrvalvtGgasGiGrevarrlvdeGahvvladld.aeaaeavaaelvdkfGadkavalkldvtdeeavkaafaevalayGGvdivvnnaGia..vskpleeteleeWdlnldilatGyflvareaarllrkqglggnlvfiasknav 557
                 +l ++ +l+tGg  G+G e+a+ lv++Ga  +++    + +++          Ga +     +dv de +vk+a++++  a   vdi++nnaG +  + + +++   ee  + +d+ a G   v+  a+r  +k + g+++++i+s+ + 
  MMETSP1137-20121227|1699_1  35 SLKGKRVLLTGGNRGLGFEIAKELVAQGAETIVIGRRsSPELD--------ALGAKQI-IQGVDVQDEASVKKAIEQIEAA---VDIIINNAGYFpdIEESMDNLVYEEQLKMIDVCALGPLRVS-AAVRAAKKLNEGAKVIIITSQAGS 171
                 67888999*********************98776543033333........3344443.3469**************9975...9********983345666777778888889*******9998.599*****************9764 PP

>> TIGR03971  SDR_subfam_1: oxidoreductase, SDR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.0   0.1    0.0037      0.77       1      33 [.      36      68 ..      36      74 .. 0.94
   2 !   25.3   0.1   9.5e-09     2e-06      60     206 ..      76     227 ..      70     272 .. 0.68

  Alignments for each domain:
  == domain 1    score: 7.0 bits;  conditional E-value: 0.0037
   TIGR03971  1 leGkvalitGaarGqGraeavrlaaeGadiiai 33
                l+Gk  l+tG  rG G   a  l a+Ga+ i+i
  MMETSP1137-20121227|1699_1 36 LKGKRVLLTGGNRGLGFEIAKELVAQGAETIVI 68
                789*************************99876 PP

  == domain 2    score: 25.3 bits;  conditional E-value: 9.5e-09
   TIGR03971  60 vealGrkvlarkadvrkleelravveegveef.GrldvvvanaGvl.sygraf.elseeqWdtvldvnlkGvWktvkavvPalierknGGsiiivssvaglkalpgl.....a....hyaaakhGlvgltktlanelaeygirvnsihPtsvdtamiep 206
                 ++alG k +++ +dv++ + +++++e+    +   +d++++naG   ++ ++  +l  e+  +++dv   G  + v a+v a    ++G  +ii++s ag     ++     +    h + a   ++g+   +++el   gi v  ihP   +t m+++
  MMETSP1137-20121227|1699_1  76 LDALGAKQIIQGVDVQDEASVKKAIEQ----IeAAVDIIINNAGYFpDIEESMdNLVYEEQLKMIDVCALGPLR-VSAAVRAAKKLNEGAKVIIITSQAGSCEWRFTqnpdgGdyghHMSRAACNIMGV--LMSQELKSEGIPVVLIHPGFNKTGMTAK 227
                 67999**********997776666654....41469********8734554442688888899********987.6889999999999**********9976543331111131111444444445544..3689*********************983 PP

>> TIGR03206  benzo_BadH: 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.9   0.2   1.5e-09   3.1e-07       1     191 [.      36     226 ..      36     238 .. 0.78

  Alignments for each domain:
  == domain 1    score: 27.9 bits;  conditional E-value: 1.5e-09
   TIGR03206   1 lkdkvaivtgggggiggaicrrfaeegakvavldlnaeaaekvaaairekggkaeavavditdrasvdaavaaaeealgpvdvlvnnagw..dvlkpflktekaewerliainltgalymhhavlkgmverkagrivniasdaarv.......gssgeavyaackgglvafsktlarelarhgitvnvvcpgptdtalle 191
                 lk+k +++tgg  g+g  i + +  +ga+  v+       ++ + ++ + g k     vd+ d+asv+ a+  +e     vd+++nnag+  d+ +++ +    e  ++i +   g l +  av       +  +++ i+s+a+ +          g+  + + +     +   +++el  +gi v ++ pg  +t + +
  MMETSP1137-20121227|1699_1  36 LKGKRVLLTGGNRGLGFEIAKELVAQGAETIVIG------RRSSPELDALGAKQIIQGVDVQDEASVKKAIEQIEA---AVDIIINNAGYfpDIEESMDNLVYEEQLKMIDVCALGPLRVSAAVRAAKKLNEGAKVIIITSQAGSCewrftqnPDGGDYGHHMSRAACNIMGVLMSQELKSEGIPVVLIHPGFNKTGMTA 226
                 699**************************99974......667788999999999999************988876...58********8777777777777788889999999*********99988888888999999999753111111123455555555555556666677777777777777777777766655 PP

>> TIGR03325  BphB_TodD: cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.4   0.1   6.6e-08   1.4e-05       3     145 ..      36     170 ..      34     234 .. 0.68

  Alignments for each domain:
  == domain 1    score: 22.4 bits;  conditional E-value: 6.6e-08
   TIGR03325   3 lkdevvlvtggasglgralvdrfvaegarvavldk.saagleeleaahgdkvvgvegdvrllddhkeavarcveafgkldtlipnagiwdystalvdipddrideafdevfeinvkgyllavkaalpalvasrgs.viftvsnag 145
                 lk++ vl+tgg  glg  + +  va+ga   v+ + s+ +l++l    +++++    dv+  ++ k+a+++  +    +d++i+nag +    ++ +  d+ + e   ++ ++   g l    a+ +a     g+ vi+  s+ag
  MMETSP1137-20121227|1699_1  36 LKGKRVLLTGGNRGLGFEIAKELVAQGAETIVIGRrSSPELDAL---GAKQIIQ-GVDVQDEASVKKAIEQIEA---AVDIIINNAGYF---PDIEESMDNLVYEEQLKMIDVCALGPLRVSAAVRAAKKLNEGAkVIIITSQAG 170
                 88999************************999976155555555...4445543.3488888888888887654...58999***9954...44555556666666666666666666655555545544444442444556665 PP

>> TIGR03466  HpnA: hopanoid-associated sugar epimerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   0.0   2.2e-07   4.6e-05       2      72 ..      40     110 ..      39     139 .. 0.81

  Alignments for each domain:
  == domain 1    score: 20.3 bits;  conditional E-value: 2.2e-07
   TIGR03466   2 kvlvtGatGFvGsavvrllleeGeevrvlvrktsdrrnleeldv.EiveG.dlkdeaslkkalkGcealfHvA 72 
                 +vl+tG++  +G +++++l+++G+e  v+ r++s++ +  +l +  i++G d++deas+kka++ +ea + + 
  MMETSP1137-20121227|1699_1  40 RVLLTGGNRGLGFEIAKELVAQGAETIVIGRRSSPELD--ALGAkQIIQGvDVQDEASVKKAIEQIEAAVDII 110
                 79*********************************766..555414556669***********9998876665 PP

>> TIGR01831  fabG_rel: putative 3-oxoacyl-(acyl-carrier-protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.4   8.9e-07   0.00018       1     192 [.      41     230 ..      41     266 .. 0.69

  Alignments for each domain:
  == domain 1    score: 18.8 bits;  conditional E-value: 8.9e-07
   TIGR01831   1 vlvtgasrgigraialklaadgfeiavhyrsdradaeesvaairaqggnarllkfdvadrvavrevleadiaehgayygvvlnagiard..aafpalseedwdavietnldgfynvihplvmpmirarkggriitlasvsgvmgnrgqvn.......ysaakagligatkalavelakrkitvnciapglidtemvaevek 192
                 vl+tg  rg+g  ia +l a+g e  v  r++         ++ a g++  +   dv+d  +v++++e+ i  + a   ++ nag   d  +++  l  e+   +i+    g    +   v    ++ +g ++i ++s +g    r   n       +  ++a        ++ el +  i v  i pg+ +t+m a+ ++
  MMETSP1137-20121227|1699_1  41 VLLTGGNRGLGFEIAKELVAQGAETIVIGRRSS-------PELDALGAKQIIQGVDVQDEASVKKAIEQ-I--EAAVDIIINNAGYFPDieESMDNLVYEEQLKMIDVCALGPLR-VSAAVRAAKKLNEGAKVIIITSQAGSCEWRFTQNpdggdygHHMSRAACNIMGVLMSQELKSEGIPVVLIHPGFNKTGMTAKYKE 230
                 89**********************999877654.......578899999999999*********99985.4..456677888999744421344444444444444444444433.3445666677889***********9887764444122221134455544444456789999******************998766 PP

>> TIGR00521  coaBC_dfp: phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0       1.3   2.8e+02     176     194 ..      28      46 ..      14      48 .. 0.82
   2 !   13.3   0.4   3.4e-05    0.0069     214     274 ..      50     114 ..      44     119 .. 0.77
   3 ?    0.8   0.0      0.21        44     219     237 ..     152     170 ..     146     179 .. 0.80
   4 ?    2.9   0.0     0.047       9.7     211     245 ..     194     229 ..     187     254 .. 0.78

  Alignments for each domain:
  == domain 1    score: -1.9 bits;  conditional E-value: 1.3
   TIGR00521 176 eelskkeelkgkrvlitag 194
                 e++++ ++lkgkrvl+t+g
  MMETSP1137-20121227|1699_1  28 ESVYDGSSLKGKRVLLTGG 46 
                 45677789********998 PP

  == domain 2    score: 13.3 bits;  conditional E-value: 3.4e-05
   TIGR00521 214 mglalAeaavkrGakVtliagpvsleep.....k.evksikvltaeemleaalnelakkldiiisaA 274
                 +g+++A+++v +Ga+ ++i    s +e+     k  ++ ++v++ +++ ++a++++ +++diii+ A
  MMETSP1137-20121227|1699_1  50 LGFEIAKELVAQGAETIVIGRR-SSPELdalgaKqIIQGVDVQDEASV-KKAIEQIEAAVDIIINNA 114
                 599************9988533.3333211111435677899999999.9**************988 PP

  == domain 3    score: 0.8 bits;  conditional E-value: 0.21
   TIGR00521 219 AeaavkrGakVtliagpvs 237
                 A++ +++GakV++i++++ 
  MMETSP1137-20121227|1699_1 152 AAKKLNEGAKVIIITSQAG 170
                 6677899********9876 PP

  == domain 4    score: 2.9 bits;  conditional E-value: 0.047
   TIGR00521 211 sGkmglalAeaavkrGakVtliagpvsleepk.evk 245
                   +mg+ + +++ ++G  V+li+  ++++ +  ++k
  MMETSP1137-20121227|1699_1 194 CNIMGVLMSQELKSEGIPVVLIHPGFNKTGMTaKYK 229
                 568********************8888765554444 PP

>> TIGR01179  galE: UDP-glucose 4-epimerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   5.6e-06    0.0011       1      89 [.      40     126 ..      40     134 .. 0.89

  Alignments for each domain:
  == domain 1    score: 15.6 bits;  conditional E-value: 5.6e-06
   TIGR01179   1 kiLvtGgaGyiGshvvrqllekgkevvvlDnlskgskealkalekitevklveg.dladkekleavle..eekidaviHfaali.avgEsvke 89 
                 ++L+tGg   +G  ++++l ++g+e++v+   s+ + +al a +      +++g d++d++++++++e  e ++d +i  a++  +++Es+++
  MMETSP1137-20121227|1699_1  40 RVLLTGGNRGLGFEIAKELVAQGAETIVIGRRSSPELDALGAKQ------IIQGvDVQDEASVKKAIEqiEAAVDIIINNAGYFpDIEESMDN 126
                 59**************************************9999......555449***********9667889*******986379999975 PP

>> TIGR01408  Ube1: ubiquitin-activating enzyme E1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.7   0.1     2e-05     0.004      26      94 ..      40     107 ..      27     140 .. 0.81

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 2e-05
   TIGR01408  26 nvlis.GmkGlGveiaknlvlaGvksvtlhdeekvelwdlssnfflseddvgknraeasvkk.laelnqyv 94 
                 +vl++ G +GlG eiak+lv  G  ++ +      el  l+++ ++   dv     easvkk +++++ +v
  MMETSP1137-20121227|1699_1  40 RVLLTgGNRGLGFEIAKELVAQGAETIVIGRRSSPELDALGAKQIIQGVDVQD---EASVKKaIEQIEAAV 107
                 566662679*************************************9999963...444544244444444 PP

>> TIGR01500  sepiapter_red: sepiapterin reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.0   0.4   0.00044      0.09       3      50 ..      41      78 ..      39     172 .. 0.64
   2 ?    1.0   0.0      0.24        49     213     252 ..     224     264 ..     189     267 .. 0.81

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 0.00044
   TIGR01500  3 llvtGasrGfGrelaqelakrlkaegsvlvLlaR.ndeaLkeskaeiea 50
                +l+tG  rG+G e+a+el+     +g   ++++R +   L       +a
  MMETSP1137-20121227|1699_1 41 VLLTGGNRGLGFEIAKELVA----QGAETIVIGRrSSPEL-------DA 78
                699***************98....5555555554033333.......33 PP

  == domain 2    score: 1.0 bits;  conditional E-value: 0.24
   TIGR01500 213 vkalyrelkedgklvdpkrsaekll.klleadkfksGshvD 252
                 + a y+e  e +  vdp + a+++l ++++ad  ksG +++
  MMETSP1137-20121227|1699_1 224 MTAKYKEIWEIEGAVDPSVGAKRVLyEVINADMSKSGTYIN 264
                 66778888888888999999988653788999999998775 PP

>> TIGR02356  adenyl_thiF: thiazole biosynthesis adenylyltransferase ThiF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.7   0.6   6.6e-05     0.014      18      92 ..      35     108 ..      26     140 .. 0.75

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 6.6e-05
   TIGR02356  18 klleskvliiG.aGgLgsavaeylaaaGvgtiaivDdDevdlsNlqrqilfaeedvk.rpKveaaaerlkelnseir 92 
                  l+ ++vl+ G   gLg ++a+ l+a G+ ti+i  + + +l+ l  +++ +  dv+  +   ++++++++++  + 
  MMETSP1137-20121227|1699_1  35 SLKGKRVLLTGgNRGLGFEIAKELVAQGAETIVIGRRSSPELDALGAKQIIQGVDVQdEA---SVKKAIEQIEAAVD 108
                 57889999986257*******************************999999988888444...44555555554443 PP

>> TIGR01470  cysG_Nterm: siroheme synthase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.8   0.0   7.5e-05     0.015       6      80 ..      35     110 ..      34     132 .. 0.86

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 7.5e-05
   TIGR01470   6 nlegkavlvvGggev.alrKarlllkagAklrviaeeleaelkllaeeskitwlekefdaellegivlviaatdde 80 
                 +l+gk+vl++Gg  + + + a+ l++ gA+  vi +++++el +l +++ i+ ++ + +a+  + i+ + aa d  
  MMETSP1137-20121227|1699_1  35 SLKGKRVLLTGGNRGlGFEIAKELVAQGAETIVIGRRSSPELDALGAKQIIQGVDVQDEASVKKAIEQIEAAVDII 110
                 69**********98637788999****************************9999998888888888888877655 PP

>> TIGR02823  oxido_YhdH: putative quinone oxidoreductase, YhdH/YhfP family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.3   0.00015     0.031     145     220 ..      37     110 ..      25     115 .. 0.77

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 0.00015
   TIGR02823 145 eegevlVtGAtGgVgs.lavalLsklGyevvavtgkkeeeeylkelGakevisreeleeekkkplekerwagavDtv 220
                 + + vl tG + g g  +a + L + G e + v+g+++ +  l +lGak++i+  ++++e++   + e+ ++avD +
  MMETSP1137-20121227|1699_1  37 KGKRVLLTGGNRGLGFeIAKE-LVAQGAETI-VIGRRS-SPELDALGAKQIIQGVDVQDEASVKKAIEQIEAAVDII 110
                 567899999999999615555.555677655.567765.5679***************9987777778999999976 PP

>> TIGR01214  rmlD: dTDP-4-dehydrorhamnose reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00013     0.027       1      61 [.      40     117 ..      40     155 .. 0.87

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 0.00013
   TIGR01214   1 rilitGakgqlgreLveqlskegsevvaltrs...............qldledpealeellreikP..dvvvntaAyt 61 
                 r+l+tG++  lg e++++l  +g e++++ r+                +d++d +++++ +++i+   d+++n a y 
  MMETSP1137-20121227|1699_1  40 RVLLTGGNRGLGFEIAKELVAQGAETIVIGRRsspeldalgakqiiqGVDVQDEASVKKAIEQIEAavDIIINNAGYF 117
                 79*******************9999999998889************99************9987643389****9995 PP

>> TIGR01289  LPOR: light-dependent protochlorophyllide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   0.00042     0.085       4     100 ..      39     124 ..      36     130 .. 0.73
   2 ?   -2.2   0.0       2.4   4.9e+02     248     278 ..     196     226 ..     193     246 .. 0.80
   3 ?   -4.0   0.0       8.4   1.7e+03     251     277 ..     236     262 ..     229     265 .. 0.75

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 0.00042
   TIGR01289   4 ptviitgassglglaaakalvekgkwhvvmacrdlekaekaakslglpkdsytilkldlasldsvrkfveqfresgrsldalvcnaavylpllkepl 100
                 + v++tg   glg++ ak lv++g   +v+  r         + lg    +  i  +d+    sv+k +eq+ +   ++d+++ n a y+p ++e +
  MMETSP1137-20121227|1699_1  39 KRVLLTGGNRGLGFEIAKELVAQGAETIVIGRRSSPEL----DALGA---KQIIQGVDVQDEASVKKAIEQIEA---AVDIII-NNAGYFPDIEESM 124
                 5699********************88888776654433....33443...335667888888888888887654...566655.5566888887765 PP

  == domain 2    score: -2.2 bits;  conditional E-value: 2.4
   TIGR01289 248 itkgyvseeeagkrlaqvvadpklkksgvyw 278
                 i +  +s+e+  + +  v+ +p ++k+g+  
  MMETSP1137-20121227|1699_1 196 IMGVLMSQELKSEGIPVVLIHPGFNKTGMTA 226
                 5666788999999999999999999988754 PP

  == domain 3    score: -4.0 bits;  conditional E-value: 8.4
   TIGR01289 251 gyvseeeagkrlaqvvadpklkksgvy 277
                 g v      kr+   v + ++ ksg y
  MMETSP1137-20121227|1699_1 236 GAVDPSVGAKRVLYEVINADMSKSGTY 262
                 556666677888888888888888887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (273 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       212  (0.0516821); expected 82.0 (0.02)
Passed bias filter:                      154  (0.0375427); expected 82.0 (0.02)
Passed Vit filter:                        34  (0.00828864); expected 4.1 (0.001)
Passed Fwd filter:                        20  (0.00487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              20  [number of targets reported over threshold]
# CPU time: 0.41u 0.17s 00:00:00.57 Elapsed: 00:00:00.53
# Mc/sec: 679.87
//
Query:       MMETSP1137-20121227|1700_1  [L=420]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (420 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        89  (0.0216967); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.16s 00:00:00.44 Elapsed: 00:00:00.79
# Mc/sec: 701.71
//
Query:       MMETSP1137-20121227|1701_1  [L=276]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (276 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        43  (0.0104827); expected 82.0 (0.02)
Passed bias filter:                       33  (0.00804486); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.15s 00:00:00.35 Elapsed: 00:00:00.76
# Mc/sec: 479.33
//
Query:       MMETSP1137-20121227|1702_1  [L=241]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.3e-06   25.8   3.4    1.8e-06   25.3   2.4    1.2  1  TIGR00599 rad18: DNA repair protein rad18


Domain annotation for each model (and alignments):
>> TIGR00599  rad18: DNA repair protein rad18
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.3   2.4   4.5e-10   1.8e-06      29      69 ..      20      60 ..       8      84 .. 0.93

  Alignments for each domain:
  == domain 1    score: 25.3 bits;  conditional E-value: 4.5e-10
   TIGR00599 29 ChvCkdffkaPvltsCsHtFCslCiRrcLseepkCPlCrae 69
                C +C   ++ P+   C+H FC lC+ +   +  +CP+Cr +
  MMETSP1137-20121227|1702_1 20 CSICIGSLREPLALGCGHAFCRLCLLQSALHSDRCPICRGS 60
                *************************99999999*****975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (241 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        99  (0.0241346); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.23u 0.17s 00:00:00.40 Elapsed: 00:00:00.55
# Mc/sec: 578.35
//
Query:       MMETSP1137-20121227|1703_1  [L=70]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        31  (0.00755729); expected 82.0 (0.02)
Passed bias filter:                       28  (0.00682594); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.28
# Mc/sec: 329.97
//
Query:       MMETSP1137-20121227|1704_1  [L=213]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.3e-14   51.0   0.1    1.5e-13   48.4   0.1    1.9  1  TIGR00887 2A0109: phosphate:H+ symporter
    0.00078   16.3   1.8     0.0011   15.7   1.2    1.4  1  TIGR00895 2A0115: MFS transporter, aromatic acid:H+ symporter (AAHS) family
    0.00095   16.2   0.0     0.0015   15.5   0.0    1.3  1  TIGR00886 2A0108: nitrite transporter
     0.0082   13.9   0.1      0.012   13.4   0.1    1.2  1  TIGR01337 apcB: allophycocyanin, beta subunit


Domain annotation for each model (and alignments):
>> TIGR00887  2A0109: phosphate:H+ symporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.4   0.1   1.4e-16   1.5e-13     377     486 ..      61     169 ..       1     173 [. 0.83

  Alignments for each domain:
  == domain 1    score: 48.4 bits;  conditional E-value: 1.4e-16
   TIGR00887 377 vlfvvlaiaynelsek..gllalyvlaqfFanFGPnattFivPaevFPaRlRstahGisaaaGkvGaiiaqlalslladkgaakkgkptgiwvenvleifalvmllGilftl 486
                 +l   l++ +  + ++  g+l +   +q+ + +  n+tt+++ + v+   +R+t  G+saa GkvGaii+ ++++l+ d+ + ++ + t   v +++   +++ + G+++tl
  MMETSP1137-20121227|1704_1  61 LL---LGLLWPAMIDNinGVLLVLYYLQYASYWVANTTTYVMSSLVYKPSIRGTLNGLSAACGKVGAIIGVTLFTLMLDSCEDDDSECTDDKVVKIMYTSMTTAICGMMCTL 169
                 33...344444444435555544445689999*********************************************9988888888888889999999999999*****98 PP

>> TIGR00895  2A0115: MFS transporter, aromatic acid:H+ symporter (AAHS) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   1.2   1.1e-06    0.0011     341     397 ..      78     134 ..      38     135 .. 0.79

  Alignments for each domain:
  == domain 1    score: 15.7 bits;  conditional E-value: 1.1e-06
   TIGR00895 341 lllllvilGlfvngaqsgllalmaefYptaiRatgvgwaigiGrlgaiigpilagvl 397
                 ll+l  +  + +  a +  +++++ +Y + iR+t  g   ++G++gaiig  l   +
  MMETSP1137-20121227|1704_1  78 LLVLYYLQYASYWVANTTTYVMSSLVYKPSIRGTLNGLSAACGKVGAIIGVTLFTLM 134
                 344444444556678899999*****************************9887766 PP

>> TIGR00886  2A0108: nitrite transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   1.5e-06    0.0015     113     204 ..      98     188 ..      87     209 .. 0.75

  Alignments for each domain:
  == domain 1    score: 15.5 bits;  conditional E-value: 1.5e-06
   TIGR00886 113 amisefFpkkevGtAlglaaGlGNlGggvaqlvmpaiieallkgagqpakkawrvalvlvpalillliallvfvvvadtppgksaeaklsvk 204
                  m s  + +++ Gt +gl+a+ G +G+ +   +++ + +++  + ++ +     v+++      ++  ++ ++  v   p+g++ +a+++ k
  MMETSP1137-20121227|1704_1  98 VMSSLVYKPSIRGTLNGLSAACGKVGAIIGVTLFTLMLDSCEDDDSECT-DDKVVKIMYTSMTTAICGMMCTLYGVGVEPTGQKYKANAQIK 188
                 678999*********************9999999888887777765554.666777755555555555566666666777777666655554 PP

>> TIGR01337  apcB: allophycocyanin, beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.1   1.2e-05     0.012      87     163 ..      82     163 ..      77     166 .. 0.75

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 1.2e-05
   TIGR01337  87 yylryasyaliagdnsvleervld.GlketynslgvPiaat..vraiqilkelikekveksd..dakkiiaepfdylikels 163
                 yyl+yasy +  + + v+++ v +  ++ t n l+   + +  + ++ ++  ++ +  ++++  + +k+++  +  ++  ++
  MMETSP1137-20121227|1704_1  82 YYLQYASYWVANTTTYVMSSLVYKpSIRGTLNGLSAACGKVgaIIGVTLFTLMLDSCEDDDSecTDDKVVKIMYTSMTTAIC 163
                 **********9999********97479*******998876522555666666666665555555566777777777777666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (213 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       115  (0.0280351); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.23u 0.15s 00:00:00.38 Elapsed: 00:00:00.35
# Mc/sec: 803.25
//
Query:       MMETSP1137-20121227|1705_1  [L=60]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       101  (0.0246221); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.17s 00:00:00.32 Elapsed: 00:00:00.38
# Mc/sec: 208.40
//
Query:       MMETSP1137-20121227|1706_1  [L=247]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.6e-31  107.2   0.0    7.7e-31  105.0   0.0    1.8  1  TIGR01744 XPRTase: xanthine phosphoribosyltransferase
    8.1e-09   33.6   0.0    1.2e-08   33.1   0.0    1.3  1  TIGR01090 apt: adenine phosphoribosyltransferase
    5.1e-05   20.2   0.0    7.4e-05   19.7   0.0    1.3  1  TIGR01743 purR_Bsub: pur operon repressor PurR
    0.00071   17.1   0.0     0.0011   16.5   0.0    1.3  1  TIGR01367 pyrE_Therm: orotate phosphoribosyltransferase


Domain annotation for each model (and alignments):
>> TIGR01744  XPRTase: xanthine phosphoribosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  105.0   0.0   7.5e-34   7.7e-31       2     190 ..      32     215 ..      31     216 .. 0.87

  Alignments for each domain:
  == domain 1    score: 105.0 bits;  conditional E-value: 7.5e-34
   TIGR01744   2 ellkqkikeeGkvldek.....ilkvdsflnhqldaklmrevgeefarrfa.dkgitkiltieasGiaPaimtalkldvPvvfakkkkpltltdqlltasvvsftkskestvivskeflsdedrvliiddflanGdaarglvdivkqagakivGlGivieksfqnGreeleelglrveslakiasleeekvtlvq 190
                 e l+++i+    v+++      +lkv sf+nhq+d +lm   g+++a r +   g +kil+   +G   a   al++ +P+v a  + p   +     ++v+    ++     +s+efl+ edrvl++d fl++G +a +l++++k+aga++vG G++iek+++ Gr +l   +++vesl+ i+++++ kv++ +
  MMETSP1137-20121227|1706_1  32 EILRERIESSASVVPDSetgapMLKVSSFINHQVDCHLMSICGQHLAYRSRgRFGTSKILATK-TGALLAQSCALHMRLPLVVALDQPPVGANG----CKVYEN--GG---NYISSEFLTSEDRVLVLDLFLSSGSTASALSQLAKDAGANVVGYGFMIEKAYERGRSKLL-PNVPVESLCSIETIDKGKVSFQD 215
                 67899999999999875455559**********************986655167999*99976.57778999***********99988877665....555543..33...369********************************************************8.59*****************9865 PP

>> TIGR01090  apt: adenine phosphoribosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.1   0.0   1.1e-11   1.2e-08     101     168 ..     135     202 ..      85     203 .. 0.89

  Alignments for each domain:
  == domain 1    score: 33.1 bits;  conditional E-value: 1.1e-11
   TIGR01090 101 ihkdalkkgkrvlivDDllAtgGtveAaleLikklgaevveaaflielkklkgrkkleekvkvfslle 168
                 i+++ l++ +rvl++D  l  g t++A  +L k  ga+vv++ f+ie ++ +gr+kl ++v+v sl++
  MMETSP1137-20121227|1706_1 135 ISSEFLTSEDRVLVLDLFLSSGSTASALSQLAKDAGANVVGYGFMIEKAYERGRSKLLPNVPVESLCS 202
                 778889999******************************************************99986 PP

>> TIGR01743  purR_Bsub: pur operon repressor PurR
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.0   7.2e-08   7.4e-05     189     255 ..     138     208 ..      90     216 .. 0.82

  Alignments for each domain:
  == domain 1    score: 19.7 bits;  conditional E-value: 7.2e-08
   TIGR01743 189 rslkkGskvllvddflkaGGtvkGlielleefdaelvGigvlidneeee..eklvdd..yvsllklkeiee 255
                   l +  +vl++d fl +G t+  l +l ++  a++vG g +i+++ e+   kl  +    sl ++++i++
  MMETSP1137-20121227|1706_1 138 EFLTSEDRVLVLDLFLSSGSTASALSQLAKDAGANVVGYGFMIEKAYERgrSKLLPNvpVESLCSIETIDK 208
                 55677789***********************************9987651144444422456777777665 PP

>> TIGR01367  pyrE_Therm: orotate phosphoribosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0   1.1e-06    0.0011     107     163 ..     145     204 ..     129     211 .. 0.78

  Alignments for each domain:
  == domain 1    score: 16.5 bits;  conditional E-value: 1.1e-06
   TIGR01367 107 kvvvveDvvttGgsakeaikiieelGgqvvglaaiidr...skgakldegvPllsLkele 163
                 +v+v +  +  G +a    ++ +++G++vvg + +i++   +  +kl  +vP++sL ++e
  MMETSP1137-20121227|1706_1 145 RVLVLDLFLSSGSTASALSQLAKDAGANVVGYGFMIEKayeRGRSKLLPNVPVESLCSIE 204
                 4444444556666666777999***************955434899**********9886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (247 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       109  (0.0265724); expected 82.0 (0.02)
Passed bias filter:                      109  (0.0265724); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.24u 0.14s 00:00:00.38 Elapsed: 00:00:00.39
# Mc/sec: 835.93
//
Query:       MMETSP1137-20121227|1707_1  [L=44]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (44 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        27  (0.00658216); expected 82.0 (0.02)
Passed bias filter:                       25  (0.00609459); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.15s 00:00:00.27 Elapsed: 00:00:00.26
# Mc/sec: 223.37
//
Query:       MMETSP1137-20121227|1708_1  [L=653]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (653 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       181  (0.0441248); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.16s 00:00:00.61 Elapsed: 00:00:00.50
# Mc/sec: 1723.78
//
Query:       MMETSP1137-20121227|1709_1  [L=247]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (247 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        73  (0.0177962); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.17s 00:00:00.39 Elapsed: 00:00:00.26
# Mc/sec: 1253.90
//
Query:       MMETSP1137-20121227|1710_1  [L=614]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (614 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        75  (0.0182838); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.14s 00:00:00.53 Elapsed: 00:00:00.44
# Mc/sec: 1841.85
//
Query:       MMETSP1137-20121227|1711_1  [L=195]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (195 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        90  (0.0219405); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.16s 00:00:00.37 Elapsed: 00:00:00.34
# Mc/sec: 757.00
//
Query:       MMETSP1137-20121227|1712_1  [L=483]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (483 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       101  (0.0246221); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.14s 00:00:00.47 Elapsed: 00:00:00.33
# Mc/sec: 1931.84
//
Query:       MMETSP1137-20121227|1713_1  [L=174]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (174 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       148  (0.03608); expected 82.0 (0.02)
Passed bias filter:                      124  (0.0302292); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.17s 00:00:00.38 Elapsed: 00:00:00.43
# Mc/sec: 534.10
//
Query:       MMETSP1137-20121227|1714_1  [L=272]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (272 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       163  (0.0397367); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.25s 00:00:00.41 Elapsed: 00:00:00.44
# Mc/sec: 815.93
//
Query:       MMETSP1137-20121227|1716_1  [L=346]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (346 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        75  (0.0182838); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.21s 00:00:00.39 Elapsed: 00:00:00.50
# Mc/sec: 913.36
//
Query:       MMETSP1137-20121227|1717_1  [L=230]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (230 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       117  (0.0285227); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.21s 00:00:00.34 Elapsed: 00:00:00.28
# Mc/sec: 1046.81
//
Query:       MMETSP1137-20121227|1718_1  [L=359]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (359 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        96  (0.0234032); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.23s 00:00:00.42 Elapsed: 00:00:00.36
# Mc/sec: 1316.22
//
Query:       MMETSP1137-20121227|1719_1  [L=342]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (342 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       102  (0.0248659); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.15s 00:00:00.41 Elapsed: 00:00:00.38
# Mc/sec: 1187.90
//
Query:       MMETSP1137-20121227|1720_1  [L=220]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (220 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        83  (0.020234); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.15s 00:00:00.35 Elapsed: 00:00:00.45
# Mc/sec: 645.28
//
Query:       MMETSP1137-20121227|1721_1  [L=411]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (411 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        88  (0.0214529); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.14s 00:00:00.43 Elapsed: 00:00:00.38
# Mc/sec: 1427.57
//
Query:       MMETSP1137-20121227|1722_1  [L=384]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (384 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        76  (0.0185275); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.14s 00:00:00.42 Elapsed: 00:00:00.42
# Mc/sec: 1206.76
//
Query:       MMETSP1137-20121227|1723_1  [L=395]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (395 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       114  (0.0277913); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.16s 00:00:00.46 Elapsed: 00:00:00.35
# Mc/sec: 1489.59
//
Query:       MMETSP1137-20121227|1724_1  [L=453]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.5e-54  182.6   0.0    3.4e-54  182.1   0.0    1.1  1  TIGR00539 hemN_rel: putative oxygen-independent coproporphyrinogen III oxidase
    3.8e-46  155.6   0.0      5e-46  155.2   0.0    1.1  1  TIGR04107 rSAM_HutW: putative heme utilization radical SAM enzyme HutW
    1.1e-26   91.5   0.0    1.6e-26   91.0   0.0    1.1  1  TIGR00538 hemN: oxygen-independent coproporphyrinogen III oxidase
    9.8e-24   82.0   0.0    1.4e-23   81.5   0.0    1.1  1  TIGR03994 rSAM_HemZ: coproporphyrinogen dehydrogenase HemZ
    5.1e-07   26.4   0.0    7.1e-07   25.9   0.0    1.1  1  TIGR01211 ELP3: histone acetyltransferase, ELP3 family
      2e-06   24.7   0.0    3.2e-06   24.1   0.0    1.2  1  TIGR04013 B12_SAM_MJ_1487: B12-binding domain/radical SAM domain protein, MJ_1487 family
    5.3e-06   23.6   0.0    8.1e-06   23.0   0.0    1.2  1  TIGR01212 TIGR01212: radical SAM protein, TIGR01212 family
  ------ inclusion threshold ------
      0.036   10.8   0.0       0.05   10.3   0.0    1.1  1  TIGR03471 HpnJ: hopanoid biosynthesis associated radical SAM protein HpnJ


Domain annotation for each model (and alignments):
>> TIGR00539  hemN_rel: putative oxygen-independent coproporphyrinogen III oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  182.1   0.0   6.7e-57   3.4e-54      29     315 ..      71     374 ..      64     385 .. 0.87

  Alignments for each domain:
  == domain 1    score: 182.1 bits;  conditional E-value: 6.7e-57
   TIGR00539  29 keeYlqaLlqdlkaalaktdqeklksifiGGGtPsslsaealkklleeikkqlklsddieitveanPetveaeklkglkeaGinrlslGvqsfedDkLeklgrvhkakevasavelakksGle...nislDLmyglPlqtleelkeelklaleLdaehlsvYaLivepntvlekrakk....lpddealaelyevvrelleaagfkqYevsnyakaGfqvkhnLaYWsaedYlgiGaGahGkvanertvakklvktyik...kiler..gv.elleekevtkedkrlek....lflglrlvegv 315
                  e Y++ Ll++++a+ + +++++l+si+ GGGtPs+   + l +++++++ +  l  d e t+e +P+t ++++l+ + +aG+nr+s+Gvqsf+d +L+  gr h  +ev  a++l +  G     ++slDL+ glP  t  + +++l  a+e  a+h+svY L vep t + +        lp de  a+++  +   l +agf+ Y +s+yak G ++ hn aYW++  + g+G Ga   v + r    + +++y +    +l+r  g+ e+ + +  ++ d  le     l+l lr+ +g+
  MMETSP1137-20121227|1724_1  71 AERYVNLLLREINASPSGIEDQPLRSIYFGGGTPSLTPPRLLSRIIQTVRSRYGLHRDFECTLEMDPGTFDRARLEAFLDAGVNRVSVGVQSFDDKLLKAAGRAHGLREVEVALDLLLGGGNYpglSVSLDLISGLPHLTRXSWLHSLDRAVESGAHHVSVYDLQVEPGTAFDRWYVAgsapLPSDEDAAQMFRDASTRLRSAGFEHYXISSYAKPGRRCVHNRAYWNNAPFWGFGLGATSHVRGVRLARPRRMREYQEwveGPLQRlgGFdEYSQSHGTAEPDDSLEAlqtsLMLALRTDAGI 374
                 688******************************************************************************************************************9988643338*********************************************98766566789*************************************************************999998888877754111556664344134445556666666664111246666666555 PP

>> TIGR04107  rSAM_HutW: putative heme utilization radical SAM enzyme HutW
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  155.2   0.0   9.8e-49     5e-46      64     344 ..      67     346 ..      63     369 .. 0.93

  Alignments for each domain:
  == domain 1    score: 155.2 bits;  conditional E-value: 9.8e-49
   TIGR04107  64 keelvaeYvdallkelkaeaelplaqsapieavYlGGGTPtaLsaedlarlieaireylplapdcEiTlEgRinefddekaeaaleagvnRfSiGvQsfdtevRrrlgRlddreevlerleeLs...aldraavviDLlyGLpgqteeiweeDleivaelgldGvdlYaLnllpgtplakavekgkleapadteekaslyaagvealeaegwkqlSvsHwartnrerslYNsliksgaevlafGagAGGnlgglslmverdleeyleavkagekplamltkqse 344
                  +++ ++Yv+ ll+e++a+ +   ++++p++++Y+GGGTP+    + l+r+i+++r+   l  d E TlE     fd++++ea l+agvnR+S+GvQsfd+++ +++gR +  +ev  +l+ L    ++   +v +DL+ GLp+ t+  w + l+++ e+g++ v +Y+L++ pgt +++   +g+ + p+  e+ a+++  +   l+++g+++   s +a+  r r + N++  ++a+ + fG gA  ++ g++l   r ++ey+e v+   + l++  + s+
  MMETSP1137-20121227|1724_1  67 ADAAAERYVNLLLREINASPSG--IEDQPLRSIYFGGGTPSLTPPRLLSRIIQTVRSRYGLHRDFECTLEMDPGTFDRARLEAFLDAGVNRVSVGVQSFDDKLLKAAGRAHGLREVEVALDLLLgggNYPGLSVSLDLISGLPHLTRXSWLHSLDRAVESGAHHVSVYDLQVEPGTAFDRWYVAGSAPLPS-DEDAAQMFRDASTRLRSAGFEHYXISSYAKPGR-RCVHNRAYWNNAPFWGFGLGATSHVRGVRLARPRRMREYQEWVEGPLQRLGGFDEYSQ 346
                 567899*********9877665..79****************************************************************************************9999999998222455679*****************************************************99999.7889*************************9988.99***************************************99988877777666555 PP

>> TIGR00538  hemN: oxygen-independent coproporphyrinogen III oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.0   0.0     3e-29   1.6e-26      77     292 ..      69     287 ..      60     305 .. 0.91

  Alignments for each domain:
  == domain 1    score: 91.0 bits;  conditional E-value: 3e-29
   TIGR00538  77 ekkdrylealkkelalvaplldkdrkvaqlhwGGGtPtylskeqieellkeireafefaedaeisieidPrelekevlkalrdeGfnrlslGvqdfdkevqkavnriqpeelikekleklr...eagfesinldliyGlPkqtkesfektlekvlelnPdrlavfnyayvPtvkkaqrkl.keealPsaeekleileaviakleeagyvfiGmdhfakpd 292
                  +++ry++ l +e++     +++ +++  +++GGGtP+   +  ++++++++r ++ +  d e ++e+dP  +++  l+a+ d+G nr+s+Gvq fd ++ ka  r      ++  l++l    ++   s+ ldli GlP+ t+ s+ ++l++ +e     ++v++    P     +  +   + lPs e+  ++++   + l+ ag+    +  +akp 
  MMETSP1137-20121227|1724_1  69 AAAERYVNLLLREINASPSGIED-QPLRSIYFGGGTPSLTPPRLLSRIIQTVRSRYGLHRDFECTLEMDPGTFDRARLEAFLDAGVNRVSVGVQSFDDKLLKAAGRAHGLREVEVALDLLLgggNYPGLSVSLDLISGLPHLTRXSWLHSLDRAVESGAHHVSVYDLQVEPGTAFDRWYVaGSAPLPSDEDAAQMFRDASTRLRSAGFEHYXISSYAKPG 287
                 6789**********998887776.89********************************************************************************99988888888887511155567***************************************99977655555515677*******************************9995 PP

>> TIGR03994  rSAM_HemZ: coproporphyrinogen dehydrogenase HemZ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.5   0.0   2.7e-26   1.4e-23     110     319 ..      66     279 ..      58     293 .. 0.92

  Alignments for each domain:
  == domain 1    score: 81.5 bits;  conditional E-value: 2.7e-26
   TIGR03994 110 kakkkveeyldallkeleavakllkgkkletvYiGGGtPttlsaeqlerllekiekkfdlskvkEftvEaGRpDsitaeklkvlkkhgvsRisinPqtmndktLkliGRkHtvedvveafklarelGfd...ninmDlivGLpgetleeveetleevkklaPesltvHalalkrasrlklekek..yeeakaeetaemlelaaelaeelglepYY 319
                 +a +  e+y++ ll+e++a  + ++++ l+++Y+GGGtP+   ++ l+r+++++++++ l++  E t+E   p +  + +l+++ + gv+R+s+  q+++dk Lk+ GR+H  ++v+ a +l    G     ++ +Dli GLp+ t  +  ++l+++ +     + v+ l +  ++++            + e++a+m++ a++ ++++g+e Y 
  MMETSP1137-20121227|1724_1  66 AADAAAERYVNLLLREINASPSGIEDQPLRSIYFGGGTPSLTPPRLLSRIIQTVRSRYGLHRDFECTLEM-DPGTFDRARLEAFLDAGVNRVSVGVQSFDDKLLKAAGRAHGLREVEVALDLLLGGGNYpglSVSLDLISGLPHLTRXSWLHSLDRAVESGAHHVSVYDLQVEPGTAFDRWYVAgsAPLPSDEDAAQMFRDASTRLRSAGFEHYX 279
                 56678899*************************************************************8.59*************************************************988886433379******************************************99987754336788999999************9999996 PP

>> TIGR01211  ELP3: histone acetyltransferase, ELP3 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.9   0.0   1.4e-09   7.1e-07     187     312 ..     123     249 ..     106     270 .. 0.80

  Alignments for each domain:
  == domain 1    score: 25.9 bits;  conditional E-value: 1.4e-09
   TIGR01211 187 kakvrcvgltietrPdyareeeidemlklGatrvelGvqtiyeevleeikrGhtvkevveatrllkda....glkvayhlmPglpgssferdlksfrelfederfkpdmlkiyPtlvvrgtelyelwkrG 312
                  + +r    t+e  P  ++   ++  l+ G+ rv +Gvq+  +++l+   r h+++ev  a  ll       gl v+  l+ glp       l+s+++ +e   +    + +y   v  gt    ++ +G
  MMETSP1137-20121227|1724_1 123 YGLHRDFECTLEMDPGTFDRARLEAFLDAGVNRVSVGVQSFDDKLLKAAGRAHGLREVEVALDLLLGGgnypGLSVSLDLISGLPHLTRXSWLHSLDRAVESGAH---HVSVYDLQVEPGTAFDRWYVAG 249
                 567888999*************************************************99999986541222789999999999998888888888888877654...4566666666666666666665 PP

>> TIGR04013  B12_SAM_MJ_1487: B12-binding domain/radical SAM domain protein, MJ_1487 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.1   0.0   6.2e-09   3.2e-06     267     329 ..     154     220 ..     145     250 .. 0.81

  Alignments for each domain:
  == domain 1    score: 24.1 bits;  conditional E-value: 6.2e-09
   TIGR04013 267 rrlviGaQsgsdrvLkaikRgHtvedvveavelalea....gltpvvDfIlGlPgeteedqeatlel 329
                 +r+++G Qs +d++Lka  R H + +v+ a++l+l      gl  ++D+I GlP  t+ +  ++l+ 
  MMETSP1137-20121227|1724_1 154 NRVSVGVQSFDDKLLKAAGRAHGLREVEVALDLLLGGgnypGLSVSLDLISGLPHLTRXSWLHSLDR 220
                 5899*****************************98651112688899*******9999888777764 PP

>> TIGR01212  TIGR01212: radical SAM protein, TIGR01212 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.0   0.0   1.6e-08   8.1e-06     130     243 ..     146     262 ..     141     272 .. 0.86

  Alignments for each domain:
  == domain 1    score: 23.0 bits;  conditional E-value: 1.6e-08
   TIGR01212 130 aeykekgyevwvelGlqtahektlkkinRghdladyveavkkv....kkrgikvcshlivgLPgedreevletakivaeldvdgiklhpLhvvkGtklakayekgelkvldleeYvel 243
                 + + + g+   v +G+q+ ++k lk   R+h+l ++  a   +    +  g+ v   li gLP  +r   l+ +++ +e + + + ++ L+v  Gt + + y +g     + e+ +++
  MMETSP1137-20121227|1724_1 146 EAFLDAGV-NRVSVGVQSFDDKLLKAAGRAHGLREVEVALDLLlgggNYPGLSVSLDLISGLPHLTRXSWLHSLDRAVESGAHHVSVYDLQVEPGTAFDRWYVAGSAPLPSDEDAAQM 262
                 55666666.46899********************99888776533335689*****************************************************99888777776665 PP

>> TIGR03471  HpnJ: hopanoid biosynthesis associated radical SAM protein HpnJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   9.7e-05      0.05     284     383 ..     139     242 ..     121     270 .. 0.86

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 9.7e-05
   TIGR03471 284 nvdyetlkvlkenGlrlllvGyesGdqqilkni..kkGlk.vevarkftk.dckklGlkvhGtfilGlPgetretirktiefakeldpetiqvslaapyPGtel 383
                 + d+  l+++ ++G+  + vG +s d+++lk      Gl+ veva  +     +  Gl+v  ++i GlP  tr +  ++++ a e  ++ + v   +  PGt +
  MMETSP1137-20121227|1724_1 139 TFDRARLEAFLDAGVNRVSVGVQSFDDKLLKAAgrAHGLReVEVALDLLLgGGNYPGLSVSLDLISGLPHLTRXSWLHSLDRAVESGAHHVSVYDLQVEPGTAF 242
                 6788999***********************98722468764899988765156677*********************************999999999999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (453 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        64  (0.0156021); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                         8  (0.00195027); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.37u 0.14s 00:00:00.51 Elapsed: 00:00:00.49
# Mc/sec: 1220.23
//
Query:       MMETSP1137-20121227|1725_1  [L=590]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (590 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       116  (0.0282789); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.14s 00:00:00.51 Elapsed: 00:00:00.68
# Mc/sec: 1145.20
//
Query:       MMETSP1137-20121227|1726_1  [L=251]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (251 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        62  (0.0151146); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.16s 00:00:00.39 Elapsed: 00:00:00.31
# Mc/sec: 1068.69
//
Query:       MMETSP1137-20121227|1727_1  [L=143]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (143 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        43  (0.0104827); expected 82.0 (0.02)
Passed bias filter:                       41  (0.00999512); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.13s 00:00:00.28 Elapsed: 00:00:00.28
# Mc/sec: 674.09
//
Query:       MMETSP1137-20121227|1728_1  [L=421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.5e-78  260.6  10.3    5.9e-78  260.2   7.1    1.2  1  TIGR00817 tpt: Tpt phosphate/phosphoenolpyruvate translocator
    1.6e-05   22.2  19.7    6.1e-05   20.4  13.6    1.9  1  TIGR00950 2A78: carboxylate/amino acid/amine transporter
  ------ inclusion threshold ------
       0.14    9.3   4.4      0.056   10.5   1.1    1.7  2  TIGR01297 CDF: cation diffusion facilitator family transporter


Domain annotation for each model (and alignments):
>> TIGR00817  tpt: Tpt phosphate/phosphoenolpyruvate translocator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  260.2   7.1   4.3e-81   5.9e-78       2     297 ..     123     419 ..     122     421 .] 0.97

  Alignments for each domain:
  == domain 1    score: 260.2 bits;  conditional E-value: 4.3e-81
   TIGR00817   2 qtgllfllwyvlnvyFnivnkkllklfhypvlktlvslavgvllellswssilkkrlkiskallklllpvaivhtighvtsnvslskvavSfthtikalepifsvvlskfflgrefpltlylsLlpivlGvalasltelsfnllgflsamisniefvarnifsKkiltkk...sldklnlyalisililfllspiafiveglklltreflqaiskvnvlklvtvslvaalgifHlyqqvafqllervspltysvgNvlKRvvvIvvSilffetkisflqvlGvilaiaGvflYskvkak 297
                 ++ +lf+ w +lnv++ni nk+  ++f++p+++t+vsl+vg+  +l++w++++ k++k++k  lk+llp++ +h++gh  +  +l++ avSf  t+ka ep+f+ vls f+lg++f  ++y sLlpiv Gv+lasl+elsf + ++  a+ sn++f +r ++sK ++ k    ++   nly +++i+++ +++p+a+  eg+ +l+ ++++a+ kv+   lv ++++     +  y+ +af  l++vsp+t+s++N++KRv +I + +l+f++k+++l ++G +la+aG+f Ys  k+k
  MMETSP1137-20121227|1728_1 123 KLTSLFAAWFALNVMYNITNKRCQNAFPMPWTMTVVSLFVGIPWVLFMWATGIRKAPKLNKGALKTLLPIGAAHALGHAGAVIALGAGAVSFAQTVKAAEPVFTCVLSFFVLGTVFKWPVYASLLPIVAGVSLASLKELSFTWKALYGAVTSNVAFASRAVLSKATMDKPvgeNMGAPNLYGILTIMAFCMSLPFALYYEGPSFLA-AWAEATTKVTPFWLVRQMILDGF-YYYSYNEIAFVALNQVSPITHSIANTIKRVCIILATVLVFGNKLTPLGAIGSTLAVAGTFAYSIAKQK 419
                 57889******************************************************************************************************************************************************************9558989********************************.9*********9999976666666.8999***********************************************************98876 PP

>> TIGR00950  2A78: carboxylate/amino acid/amine transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4  13.6   4.5e-08   6.1e-05      20     261 ..     154     408 ..     138     411 .. 0.75

  Alignments for each domain:
  == domain 1    score: 20.4 bits;  conditional E-value: 4.5e-08
   TIGR00950  20 favlrrlifallllLpllrlr......nslkrllrllllgalqlgvfyvllflavkkltvaiaalllvlaPlyvtllsdllekervrkkkllAavlalaGivlllsdgnlsislaGlllgllsgisfAlgtvlakrlvkk.eglellqftgfvvlliGalll.lpfalllgpnlqalpatsl.qwlallyLgligtllayflynk......glkevdasaasilalleplvallLgllilgetlslvqliggalila 261
                 +++++ l++++  +L+++ +        +++ l+ ll +ga   ++  +  ++a     v++a  + +  P+++ +ls+ +    +++ + ++++  +aG v l s ++ls+++++l  +++s+++fA   vl+k+ + k  g ++ + + ++ l i a+ + lpfal  +++  + + ++     + ++L+    l ++  y++      +l +v++ + si ++++ ++ +l  +l++g++l+++  ig  l +a
  MMETSP1137-20121227|1728_1 154 TMTVVSLFVGIPWVLFMWATGirkapkLNKGALKTLLPIGAA-HALGHAGAVIALGAGAVSFAQTVKAAEPVFTCVLSFFVLGTVFKWPVYASLLPIVAG-VSLASLKELSFTWKALYGAVTSNVAFASRAVLSKATMDKpVGENMGAPNLYGILTIMAFCMsLPFALYYEGPSFLAAWAEAtTKVTPFWLVRQMILDGFYYYSYneiafvALNQVSPITHSIANTIKRVCIILATVLVFGNKLTPLGAIGSTLAVA 408
                 455666777776666666666558886556777777777765.56788888999****************************666666666666667788.88999*****************************999663566666666677899999977356666655554333322220223567776544444666665444555589********************************999998877666 PP

>> TIGR01297  CDF: cation diffusion facilitator family transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   1.1   4.1e-05     0.056      85     189 ..     125     239 ..     122     259 .. 0.80
   2 ?   -2.3   0.0      0.33   4.5e+02     142     168 ..     369     395 ..     331     413 .. 0.80

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 4.1e-05
   TIGR01297  85 valfilyeAierlin...peeeiegslmlivaivglivnlilalllkraGkkes........slalraaalhvlsDllsSvgvligvlliyfggwkiaDpiaslvisvlilktafr 189
                 ++lf ++ A+  ++n   ++ ++   + +++++v+l+v +  +l+++  G ++          + l   a+h+l+ + + v +l +++++ +  +k a+p+++ v s+ +l t+f+
  MMETSP1137-20121227|1728_1 125 TSLFAAWFALNVMYNitnKRCQNAFPMPWTMTVVSLFVGIPWVLFMWATGIRKApklnkgalKTLLPIGAAHALGHA-GAVIALGAGAVSFAQTVKAAEPVFTCVLSFFVLGTVFK 239
                 56667777777766666566667777889999999999999999999998888877777776444444566777765.6777888888888889*******************997 PP

  == domain 2    score: -2.3 bits;  conditional E-value: 0.33
   TIGR01297 142 aalhvlsDllsSvgvligvlliyfggw 168
                    h+++ ++  v+++++++l+   ++
  MMETSP1137-20121227|1728_1 369 PITHSIANTIKRVCIILATVLVFGNKL 395
                 567888888888888888888765555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (421 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       176  (0.0429059); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.33u 0.15s 00:00:00.48 Elapsed: 00:00:00.48
# Mc/sec: 1157.65
//
Query:       MMETSP1137-20121227|1729_1  [L=300]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (300 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        52  (0.0126767); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.13s 00:00:00.36 Elapsed: 00:00:00.42
# Mc/sec: 942.78
//
Query:       MMETSP1137-20121227|1730_1  [L=383]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (383 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       120  (0.029254); expected 82.0 (0.02)
Passed bias filter:                      100  (0.0243784); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.15s 00:00:00.41 Elapsed: 00:00:00.41
# Mc/sec: 1232.97
//
Query:       MMETSP1137-20121227|1731_1  [L=615]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   1.2e-109  364.5   0.3   1.6e-109  364.0   0.2    1.0  1  TIGR00483 EF-1_alpha: translation elongation factor EF-1, subunit alpha
    4.2e-58  195.1   0.0    5.2e-58  194.8   0.0    1.1  1  TIGR02034 CysN: sulfate adenylyltransferase, large subunit
    4.1e-41  138.8   0.6    1.4e-40  137.1   0.4    1.7  1  TIGR00485 EF-Tu: translation elongation factor Tu
    8.3e-29   98.5   0.1    1.6e-27   94.3   0.0    2.6  2  TIGR00475 selB: selenocysteine-specific translation elongation factor
    5.5e-20   69.8   0.0    1.2e-19   68.7   0.0    1.5  1  TIGR03680 eif2g_arch: translation initiation factor 2, gamma subunit
    2.3e-14   50.3   0.0    3.5e-14   49.8   0.0    1.2  1  TIGR01394 TypA_BipA: GTP-binding protein TypA/BipA
    2.3e-10   38.3   0.1      2e-09   35.3   0.0    2.4  1  TIGR00231 small_GTP: small GTP-binding protein domain
    1.3e-09   35.2   0.3    7.4e-09   32.7   0.1    2.2  2  TIGR00487 IF-2: translation initiation factor IF-2
    4.5e-07   26.2   0.1    6.7e-07   25.6   0.1    1.1  1  TIGR00484 EF-G: translation elongation factor G
    5.7e-07   26.1   0.0    6.5e-06   22.6   0.0    2.2  1  TIGR01393 lepA: GTP-binding protein LepA
      6e-06   22.8   0.0    9.9e-06   22.1   0.0    1.3  1  TIGR00503 prfC: peptide chain release factor 3
    0.00046   17.1   0.2      0.092    9.5   0.0    2.4  2  TIGR03594 GTPase_EngA: ribosome-associated GTPase EngA


Domain annotation for each model (and alignments):
>> TIGR00483  EF-1_alpha: translation elongation factor EF-1, subunit alpha
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  364.0   0.2  4.8e-112  1.6e-109       4     424 ..      99     529 ..      97     531 .. 0.96

  Alignments for each domain:
  == domain 1    score: 364.0 bits;  conditional E-value: 4.8e-112
   TIGR00483   4 ekehlnvafighvdsgkstlvgrllyeagaiderlleklkkeaeekgkasfefayvldklkeerergvtidvahkkfetdkyevtivdapghrdfiknmitgasqadaavlvvavddgele...vqpqtrehvllartlgikqlivainkmd..svnydeekfeelkkevsellkkvgykpd.evefipvsaykgdnvvkkse..napwykgktllealdkleapekpvdkplripiqdvysitgvgtvpvgrvetgvlkkgekvvfepagvsgevksiemhheqieqaepgdnigfnvrgvskkdirrgdvagdadn.ppkvakeftaqivv...lqhpgaitvgytpvldahtaqvacrfvellkkldprtgkvkeenpkflktgdaaivklkptkplviekvkeipklgrfairdmgqtvaagvvidvkk 424
                 e+ehln++fighvd+gkst  g++ly++ ++d r++ek++kea+ek + s+  a+++d  +eer +g t++v +++fe++  + ti+dapgh++++ nmi+ga qad+ vlv+++ +ge+e      qtreh+lla+tlg++ l+v inkmd  +v++ +e+fee +++++ +lk  gy+++ +v f+p+sa++  nv+k+ e   a wy+g+ +le ld+l   ++  d plr+p+   y+   +gtv  g+ve g + +g+k+ + p     ev  + +  ++++    g+n    ++++s +di  g v  +       +++ f+aq+++   l+h +  ++gyt vl++h+    c ++el   +d++tgk+ +  p f+k+g    v ++  + +++e++ +  +lgrf++rd g+t+++g +id+++
  MMETSP1137-20121227|1731_1  99 EREHLNLVFIGHVDAGKSTFCGQILYQTEQVDARTIEKYEKEAKEKNRESWFLAFIMDTNEEERAKGKTVEVGRAHFESKNKRYTILDAPGHKNYVPNMIAGACQADVGVLVISARKGEFEtgxAAXQTREHALLAKTLGVRLLVVVINKMDdmTVEWAKERFEECRDKLTPFLKGCGYNVKkDVVFLPISALTAANVIKRMEipAASWYDGPCFLEVLDNLPVVDRNRDAPLRLPVLSKYK--DLGTVIEGKVEQGTISVGDKLWMMPNRTPVEVLNVWLDQDEVRYLIGGENARVKLKDISDEDIMPGFVLTQRGAgACAAVRRFEAQLIIvelLEHKSIFSAGYTAVLHVHAMAEECSILELTASIDKKTGKKSKRPPMFVKSGAVVNVIIEVDQAVCVEQFDQCAQLGRFTLRDEGKTIGIGKIIDLTP 529
                 89**********************************************************************************************************************9887899************************966699***********************8538****************99844689*****************************99887..799*****************************************************************999888688999******98645579********************************************************************************************986 PP

>> TIGR02034  CysN: sulfate adenylyltransferase, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  194.8   0.0   1.5e-60   5.2e-58       1     404 [.     103     522 ..     103     524 .. 0.88

  Alignments for each domain:
  == domain 1    score: 194.8 bits;  conditional E-value: 1.5e-60
   TIGR02034   1 lrfltcGsvddGkstliGrllhdtkqiledqlaalerdskkkgtegeeidlallvdGlqaereqgitidvayryfstdkrkfivadtPGheqytrnmatgastadlavllvdarkGvle......qtrrhsiiasllGikhvvlavnkid..lvdydeevfeeikkdylalaekl...gvsdvtviPlsalkGdnvvekse..smpWyeGptllevletveveesaeeeelrlpvqyvnrpnldfrGyaGtiasGsvkvGdevvvlpsgresrvarivtfdgelekaeaGeavtlvled..eidisrGdllaaade.apevadqfaaelvwla....deallpGksyklklgtkkvrasvaeikhkvdvntlekeaakeleln..eiglvklsldeeialdayeenrttGafilidrlsnatvgaG 404
                 l ++  G vd Gkst+ G++l+ t+q+ +  +++ e+++k+k+ e     la+++d  + er +g t++v   +f+ + +++ + d+PGh+ y  nm++ga  ad+ vl++ arkG  e      qtr h+++a  lG++ +v+ +nk+d   v++ +e fee +++ + + +      ++dv+++P+sal+  nv+++ e  +  Wy+Gp +levl+++ v ++ ++ +lrlpv    +         G +  G+++vGd++ ++p+ +  +v ++   + e++    Ge   ++l+d  + di  G +l++  + a  ++++f+a+l+ ++    ++++++G +  l++ +   ++s+ e++  +d +t +k++   + +   ++ +v +++d+++ ++++++  ++G f l d+  ++t+g G
  MMETSP1137-20121227|1731_1 103 LNLVFIGHVDAGKSTFCGQILYQTEQVDARTIEKYEKEAKEKNRES--WFLAFIMDTNEEERAKGKTVEVGRAHFESKNKRYTILDAPGHKNYVPNMIAGACQADVGVLVISARKGEFEtgxaaxQTREHALLAKTLGVRLLVVVINKMDdmTVEWAKERFEECRDKLTPFLKGCgynVKKDVVFLPISALTAANVIKRMEipAASWYDGPCFLEVLDNLPVVDRNRDAPLRLPVLSKYK--DLGTVIEGKVEQGTISVGDKLWMMPNRTPVEVLNVWLDQDEVRYLIGGENARVKLKDisDEDIMPGFVLTQRGAgACAAVRRFEAQLIIVEllehKSIFSAGYTAVLHVHAMAEECSILELTASIDKKTGKKSKRPPMFVKsgAVVNVIIEVDQAVCVEQFDQCAQLGRFTLRDE--GKTIGIG 522
                 568889*******************************999987766..899****************************************************************9643333334************************965589****************99984423579***************988744789****************************965443..3345689*****************************99999************999744568****999987652678899****9886532222456789******************************999988776511567777899*******************9876..5666666 PP

>> TIGR00485  EF-Tu: translation elongation factor Tu
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  137.1   0.4     4e-43   1.4e-40       9     390 ..      99     525 ..      91     528 .. 0.76

  Alignments for each domain:
  == domain 1    score: 137.1 bits;  conditional E-value: 4e-43
   TIGR00485   9 skphvnvgtighvdhgkttltaaittvlakegkaaakkyde...............idkapeekargitintahveyetekrhyahvdcpghadyvknmitgaaqmdgailvvsaadg......pmpqtrehillarqvgvpklvvflnkvdlvdde...ellelvelevrellseydfpg.ddvpivrgsalkale.......gdaeweekilelmeavdeyiptperevdkpfllaiedvfsitgrgtvvtgrvergevkvgeeveivglketkkttvtgvemfkklldeakagdnvgvllrgvkkeeiergqvlakp..gsikphkkfeaevyvlkkeeggrhtpffsgyrpqfylrtt.......dvtgkielpeg......vemvlpgdnvkltvelispvaleegl......rfaireggrtvgagvvs 390
                 +++h+n+  ighvd gk+t++  i     +    +++ky++               +d+  ee+a+g t++  +  +e++++ y+ +d pgh +yv nmi+ga q d ++lv+sa  g      +  qtreh lla+ +gv  lvv +nk+d ++ e   e  e    ++  +l+  +++  +dv  +  sal a +         a+w +       +v +++p  +r+ d p+ l++   +  +  gtv+ g+ve+g++ vg+++ ++  +  +   v  v + + ++     g+n+ v l+ ++ e+i  g vl++   g++ + ++fea++ +++  e   ++ f +gy   +++ +        ++t +i++++g        +v  g  v++ +e+ ++v++e+        rf++r+ g+t+g g + 
  MMETSP1137-20121227|1731_1  99 EREHLNLVFIGHVDAGKSTFCGQILYQTEQVDARTIEKYEKeakeknreswflafiMDTNEEERAKGKTVEVGRAHFESKNKRYTILDAPGHKNYVPNMIAGACQADVGVLVISARKGefetgxAAXQTREHALLAKTLGVRLLVVVINKMDDMTVEwakERFEECRDKLTPFLKGCGYNVkKDVVFLPISALTAANvikrmeiPAASWYDGP--CFLEVLDNLPVVDRNRDAPLRLPVLSKY--KDLGTVIEGKVEQGTISVGDKLWMMPNR--TPVEVLNVWLDQDEVRYLIGGENARVKLKDISDEDIMPGFVLTQRgaGACAAVRRFEAQLIIVELLE--HKSIFSAGYTAVLHVHAMaeecsilELTASIDKKTGkkskrpPMFVKSGAVVNVIIEVDQAVCVEQFDqcaqlgRFTLRDEGKTIGIGKII 525
                 579*****************99886544433333333333211122222345455469999******************************************************877222222568************************98887723355555556677778888887526888889999999884443333233333322..344677789**************97655..6889*****************9987655..455688999999*******************************9622579999******99997766..344566789999888764222222267788877777666554446888999999999999999886422223349*************886 PP

>> TIGR00475  selB: selenocysteine-specific translation elongation factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.0   0.0      0.16        55       2      20 ..     104     122 ..     103     142 .. 0.81
   2 !   94.3   0.0   4.6e-30   1.6e-27      29     282 ..     159     434 ..     154     472 .. 0.77

  Alignments for each domain:
  == domain 1    score: 0.0 bits;  conditional E-value: 0.16
   TIGR00475   2 iiataGHvDHGKttLlkal 20 
                 +++  GHvD GK t   ++
  MMETSP1137-20121227|1731_1 104 NLVFIGHVDAGKSTFCGQI 122
                 67889*******9987655 PP

  == domain 2    score: 94.3 bits;  conditional E-value: 4.6e-30
   TIGR00475  29 PeEkKRGltiDlGyaylpledkvlgliDvPGHekflknalagvggidaalLvvdadeG......vkaqtkEHLavlkllgikelivvltKaDrvd....eeevkevEeelkeilee..eeflknakivkvsAktGqG.ieeLkke.........lknLlesldak..dkqkplrlaiDraFkvKGaGtvvtGtafsGevkvgDelvlepinkkvrvkalqaqnqsvekavAGqRialnladvdkeklkRGllilkpeepkkrvvvklkaevklkelqk 282
                  eE+ +G t+++G a ++ ++k+ +++D+PGH++++ n++ag + +d  +Lv+ a  G       + qt+EH +++k lg++ l+vv++K+D +     +e+ +e   +l  +l+   +++ k+  ++ +sA t    i+ +            ++++l+ l     +++ plrl++ +    K  Gtv+ G + +G++ vgD+l++ p   +v v ++   + +v+  + G+   + l+d+  e++  G++  +        v ++ a++ + el  
  MMETSP1137-20121227|1731_1 159 EEERAKGKTVEVGRAHFESKNKRYTILDAPGHKNYVPNMIAGACQADVGVLVISARKGefetgxAAXQTREHALLAKTLGVRLLVVVINKMDDMTvewaKERFEECRDKLTPFLKGcgYNVKKDVVFLPISALTAANvIKRMEIPaaswydgpcFLEVLDNLPVVdrNRDAPLRLPVLSK--YKDLGTVIEGKVEQGTISVGDKLWMMPNRTPVEVLNVWLDQDEVRYLIGGENARVKLKDISDEDIMPGFVLTQRGAGACAAVRRFEAQLIIVELLE 434
                 57889**************************************************998444444478*************************87511224566677778999999722555677777889999976514444322111112222334444443333367889***99875..59******************************************************************9888877777777888888776666544 PP

>> TIGR03680  eif2g_arch: translation initiation factor 2, gamma subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.7   0.0   3.4e-22   1.2e-19       5     252 ..     102     366 ..      98     374 .. 0.75

  Alignments for each domain:
  == domain 1    score: 68.7 bits;  conditional E-value: 3.4e-22
   TIGR03680   5 evniglvGhvDhGkttl.......vkaltGvwtdthseelkrgisiklGyadaeikkceeceepeaytteekceecgsetellrkvsfvDaPGhetLmatmlsGaalmdgalLviaane.....evPqpqtkehlvaleiigiknivivqnkidlvskekalenyeeike....fvkg...tvaenapiiPvsalkkvnidvlleale.keiptperdldkdalllvarsfd..vnkPGteieklkGGviGGslvqGklkvgdeieirPG 252
                 ++n+ ++GhvD Gk+t        ++++    +++++ e k     +  +  a i++ +e e+ +  t+e    +   e+   ++ +++DaPGh   +  m++Ga+  d  +Lvi+a +          qt+eh    + +g++ +v+v nk+d ++ e a e++ee ++    f+kg   +v ++   +P+sal  +n+   +e  + +  + p   +  d l +v r  d  +  P  +  k  G vi G + qG++ vgd++ + P 
  MMETSP1137-20121227|1731_1 102 HLNLVFIGHVDAGKSTFcgqilyqTEQVDARTIEKYEKEAKEK--NRESWFLAFIMDTNEEERAKGKTVEVGRAH--FES-KNKRYTILDAPGHKNYVPNMIAGACQADVGVLVISARKgefetGXAAXQTREHALLAKTLGVRLLVVVINKMDDMTVEWAKERFEECRDkltpFLKGcgyNVKKDVVFLPISALTAANVIKRMEIPAaSWYDGPCFLEVLDNLPVVDRNRDapLRLPVLSKYKDLGTVIEGKVEQGTISVGDKLWMMPN 366
                 68999**********9822222223344455556666666653..466777778888888887777777764333..344.4566799*****************************862222245689************************************9876444449998433467888899*********98888865514556666555556665666655522678988777777*****************9988885 PP

>> TIGR01394  TypA_BipA: GTP-binding protein TypA/BipA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.8   0.0     1e-16   3.5e-14       3     238 ..     104     366 ..     102     383 .. 0.77

  Alignments for each domain:
  == domain 1    score: 49.8 bits;  conditional E-value: 1e-16
   TIGR01394   3 niaiiahvDhGkttlvDklLkqsgvlrek......eeveer.........vmDsndlererGitilakntavkykdtkinivDtPGhaDfGGevervlsmvdgvlllvDaseGpl......pqtr..fvlkkalelglkpivvinkiDr.....pdarpeevvdevfdLfvelgad.deqldfpvvyas.akeGvasleeedesedleplfdailehvpaPkadkdeplqllvttldydeylGriaigrverGkvkkgqqvallkk 238
                 n+  i hvD Gk t+  ++L q+++++++      +e +e+         +mD+n+ er +G t+    +  + k+ +  i+D+PGh ++  ++       d  +l++ a +G +       qtr    l k+l ++l  +vvink+D      +++r ee  d+   ++  +g + ++++ f  + a  a + +  +e +  s    p f  +l+++p    ++d+pl+l v +  + + lG ++ g+ve+G++  g+++ ++ +
  MMETSP1137-20121227|1731_1 104 NLVFIGHVDAGKSTFCGQILYQTEQVDARtiekyeKEAKEKnreswflafIMDTNEEERAKGKTVEVGRAHFESKNKRYTILDAPGHKNYVPNMIAGACQADVGVLVISARKGEFetgxaaXQTRehALLAKTLGVRL-LVVVINKMDDmtvewAKERFEECRDKLTPFLKGCGYNvKKDVVFLPISALtAANVIKRMEIPAASWYDGPCFLEVLDNLPVVDRNRDAPLRLPVLS--KYKDLGTVIEGKVEQGTISVGDKLWMMPN 366
                 7889******************99655431111111122212244555558************************************************************997633333369984458999999998.57899**99722222467889999999999999887644455565566650455555556666777778**********************99865..45559*****************9988765 PP

>> TIGR00231  small_GTP: small GTP-binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.3   0.0   5.9e-12     2e-09       4     127 ..     103     260 ..     100     302 .. 0.79

  Alignments for each domain:
  == domain 1    score: 35.3 bits;  conditional E-value: 5.9e-12
   TIGR00231   4 ikivivGhvdvGKstLlnsllknkisiteskpgvtrdyvteqieedGkt................................ykvnllDTaGqedfdairrlyvreverslevvdivilvldveegl......ekqtkeiiheakkkgvpi.ilvvnKiDlkd......d 127
                  ++v++Ghvd+GKst   ++l+++   ++ ++ + ++y++e  +e++ +                                ++ ++lD +G++ +       v++  + ++ +d+ +lv+++++g+        qt+e +  ak+ gv + ++v+nK+D  +       
  MMETSP1137-20121227|1731_1 103 LNLVFIGHVDAGKSTFCGQILYQT---EQVDARTIEKYEKE-AKEKNREswflafimdtneeerakgktvevgrahfesknKRYTILDAPGHKNY-------VPNMIAGACQADVGVLVISARKGEfetgxaAXQTREHALLAKTLGVRLlVVVINKMDDMTvewakeR 260
                 689********************9...33335677788887.666665679999999999999999999**************************.......*********************99733222245888888888889998625678****9886555542 PP

>> TIGR00487  IF-2: translation initiation factor IF-2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0      0.32   1.1e+02      91     107 ..     106     122 ..      79     132 .. 0.72
   2 !   32.7   0.1   2.2e-11   7.4e-09     115     239 ..     161     297 ..     149     367 .. 0.74

  Alignments for each domain:
  == domain 1    score: -0.9 bits;  conditional E-value: 0.32
   TIGR00487  91 timGhvDhGktsLLdsi 107
                   +GhvD Gk ++  +i
  MMETSP1137-20121227|1731_1 106 VFIGHVDAGKSTFCGQI 122
                 457*******9987665 PP

  == domain 2    score: 32.7 bits;  conditional E-value: 2.2e-11
   TIGR00487 115 geaGGitqhiGayqvekedkkkitflDtPGheaftsmrarGakvtDivvlvvaadDG......vkpqtieaiehakaanvPi.ivainkiDkpeanpDrvkqelseyglvpeewG......Getifvpvsalkgkgid 239
                 + a G t ++G  + e ++k   t lD+PGh+ +      Ga  +D+ vlv++a  G         qt e    ak+ +v + +v+ink+D  +++  + + e  +  l p   G       ++ f+p+sal+  ++ 
  MMETSP1137-20121227|1731_1 161 ERAKGKTVEVGRAHFESKNK-RYTILDAPGHKNYVPNMIAGACQADVGVLVISARKGefetgxAAXQTREHALLAKTLGVRLlVVVINKMDDMTVEWAKERFEECRDKLTPFLKGcgynvkKDVVFLPISALTAANVI 297
                 45789999********8777.79***********998899**************998444333467999999999999998527889****99988665544443334443322211111147788888888887775 PP

>> TIGR00484  EF-G: translation elongation factor G
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.6   0.1   1.9e-09   6.7e-07      11     146 ..     103     258 ..      96     272 .. 0.74

  Alignments for each domain:
  == domain 1    score: 25.6 bits;  conditional E-value: 1.9e-09
   TIGR00484  11 rniGisahidaGktttterilfytgkihk..ig....evh..dGaa.....tmdwmeqekerGititsaattvewkdfrinlidtPGhvdftveverslrvldGavavldavaG......vepqsetvwrqakkyevPri.vfvnkmdkiGanflk 146
                  n+    h+daGk+t   +il+ t+++ +  i+    e +  + ++      md  e e+ +G t+    ++ e k+ r  ++d+PGh ++  ++       d  v+v+ a  G         q+      ak+ +v  + v +nkmd +  +  k
  MMETSP1137-20121227|1731_1 103 LNLVFIGHVDAGKSTFCGQILYQTEQVDArtIEkyekEAKekNRESwflafIMDTNEEERAKGKTVEVGRAHFESKNKRYTILDAPGHKNYVPNMIAGACQADVGVLVISARKGefetgxAAXQTREHALLAKTLGVRLLvVVINKMDDMTVEWAK 258
                 5778889*****************9865321431112444222222233337******************************************99999999*******999883322223446666666788888876515679**999887665 PP

>> TIGR01393  lepA: GTP-binding protein LepA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.6   0.0   1.9e-08   6.5e-06       5     238 ..     104     377 ..     100     426 .. 0.65

  Alignments for each domain:
  == domain 1    score: 22.6 bits;  conditional E-value: 1.9e-08
   TIGR01393   5 nfsiiahidhGkstladrllektkavserelkeq................lldsldlererGitikaqavrlkykakdgeeyvlnlidtPGhvdfsyevsrslaaceGalllvdaaqG......veaqtlanvylalekdle.iiPvinkidlPsad.....vervkkeieevi...Gldaeeail...vsaktGigieelle.............aivkkvpaPkgdkeaplkalifdsvydayrGvvvyvrvveGkikkgdkikllstgkeyeveevgv 238
                 n+  i h+d Gkst++ ++l +t+ v+ r +++                 ++d+ + er +G t+ +   ++     ++++    ++d+PGh ++  ++      ++  +l++ a +G         qt  ++ la    ++ ++ vink+d  + +      e+ ++++  ++   G++ ++ ++   +sa t  ++ + +e             ++++++p    +++apl+  ++ s y    G v+  +v +G+i++gdk+ ++ + +  ev +v +
  MMETSP1137-20121227|1731_1 104 NLVFIGHVDAGKSTFCGQILYQTEQVDARTIEKYekeakeknreswflafIMDTNEEERAKGKTVEVGRAHF-----ESKNKRYTILDAPGHKNYVPNMIAGACQADVGVLVISARKGefetgxAAXQTREHALLAKTLGVRlLVVVINKMDDMTVEwakerFEECRDKLTPFLkgcGYNVKKDVVflpISALTAANVIKRMEipaaswydgpcflEVLDNLPVVDRNRDAPLRLPVL-SKYKD-LGTVIEGKVEQGTISVGDKLWMMPNRTPVEVLNVWL 377
                 8999*******************9999876543300111112222222224555555666666665544433.....3334445689*******998877666666777899999988433322234777777776655555246799**9966554111114556666665544446776554332347898888876554433333333333336888999999999999997777.45544.588888899999999999999999988888887765 PP

>> TIGR00503  prfC: peptide chain release factor 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.1   0.0   2.9e-08   9.9e-06      13     117 ..     104     217 ..      93     268 .. 0.75

  Alignments for each domain:
  == domain 1    score: 22.1 bits;  conditional E-value: 2.9e-08
   TIGR00503  13 tfaiishpdaGkttltekvllyGnaiqeaGavk.argsqrsaksdw.....m...emekqrGisittsvlqfdyrdklvnlldtpGhedfsedtyrtltavdsalmvidaakGv 117
                 ++  i h daGk+t+  ++l   + ++     k  + ++++ +  w     m   e e+ +G ++      f+ ++k   +ld+pGh+++  +     + +d  ++vi a kG 
  MMETSP1137-20121227|1731_1 104 NLVFIGHVDAGKSTFCGQILYQTEQVDARTIEKyEKEAKEKNRESWflafiMdtnEEERAKGKTVEVGRAHFESKNKRYTILDAPGHKNYVPNMIAGACQADVGVLVISARKGE 217
                 67889*************99888777655544523444555555663332222224577788888888899*****************************************94 PP

>> TIGR03594  GTPase_EngA: ribosome-associated GTPase EngA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.5   0.0   0.00027     0.092     154     199 ..      81     126 ..      42     145 .. 0.80
   2 !    5.2   0.0    0.0055       1.9     287     335 ..     240     296 ..     162     302 .. 0.63

  Alignments for each domain:
  == domain 1    score: 9.5 bits;  conditional E-value: 0.00027
   TIGR03594 154 deileelpeeeeeeeeeeeeepikiaiiGrpNvGKStLvNallgee 199
                 d + ++  +++++  e++e+e++++ +iG   +GKSt++ ++l ++
  MMETSP1137-20121227|1731_1  81 DDVADSSANQKHSWVERDEREHLNLVFIGHVDAGKSTFCGQILYQT 126
                 4555555555554445555678*****************9999775 PP

  == domain 2    score: 5.2 bits;  conditional E-value: 0.0055
   TIGR03594 287 kalvivvNKwDlv...kdekeleelkkeleeklkfl.....kfapivfiSAltgkgv 335
                 + lv+v+NK+D +     ++++ee++++l+  lk +     k + ++ iSAlt  +v
  MMETSP1137-20121227|1731_1 240 RLLVVVINKMDDMtveWAKERFEECRDKLTPFLKGCgynvkKDVVFLPISALTAANV 296
                 5689999***99944334455555555555444333111113344555666666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (615 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       256  (0.0624086); expected 82.0 (0.02)
Passed bias filter:                      152  (0.0370551); expected 82.0 (0.02)
Passed Vit filter:                        37  (0.00901999); expected 4.1 (0.001)
Passed Fwd filter:                        15  (0.00365675); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.77u 0.19s 00:00:00.96 Elapsed: 00:00:00.98
# Mc/sec: 828.30
//
Query:       MMETSP1137-20121227|1732_1  [L=106]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (106 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        42  (0.0102389); expected 82.0 (0.02)
Passed bias filter:                       41  (0.00999512); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.10s 00:00:00.25 Elapsed: 00:00:00.25
# Mc/sec: 559.63
//
Query:       MMETSP1137-20121227|1734_1  [L=525]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (525 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       176  (0.0429059); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.15s 00:00:00.51 Elapsed: 00:00:00.52
# Mc/sec: 1332.58
//
Query:       MMETSP1137-20121227|1735_1  [L=189]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0024   15.8   0.0     0.0037   15.2   0.0    1.3  1  TIGR03221 muco_delta: muconolactone delta-isomerase


Domain annotation for each model (and alignments):
>> TIGR03221  muco_delta: muconolactone delta-isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0   9.1e-07    0.0037      19      55 ..      46      82 ..      37     101 .. 0.88

  Alignments for each domain:
  == domain 1    score: 15.2 bits;  conditional E-value: 9.1e-07
   TIGR03221 19 aaelkaeekalaqelqreGkwrhlwrvvGeyanvsif 55
                 ++ +++ek + + l+r+ +++++ rv  +y+nv + 
  MMETSP1137-20121227|1735_1 46 NKDAESQEKRYQTTLRRTNRFKDIVRVCRNYTNVCVQ 82
                467789***************************9974 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (189 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        86  (0.0209654); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.19u 0.15s 00:00:00.34 Elapsed: 00:00:00.30
# Mc/sec: 831.53
//
Query:       MMETSP1137-20121227|1736_1  [L=168]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (168 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        91  (0.0221843); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.15s 00:00:00.35 Elapsed: 00:00:00.35
# Mc/sec: 633.55
//
Query:       MMETSP1137-20121227|1737_1  [L=535]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (535 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        79  (0.0192589); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.15s 00:00:00.49 Elapsed: 00:00:00.68
# Mc/sec: 1038.44
//
Query:       MMETSP1137-20121227|1738_1  [L=281]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   1.9e-108  361.0   0.0   2.1e-108  360.9   0.0    1.0  1  TIGR01124 ilvA_2Cterm: threonine ammonia-lyase, biosynthetic
    2.9e-30  103.2   0.0    4.9e-24   82.7   0.0    2.0  2  TIGR02079 THD1: threonine dehydratase
    3.3e-17   60.4   0.0    2.4e-16   57.5   0.0    1.9  2  TIGR01127 ilvA_1Cterm: threonine dehydratase
    9.7e-11   39.0   0.1    1.4e-10   38.5   0.1    1.2  1  TIGR02991 ectoine_eutB: ectoine utilization protein EutB
     0.0037   14.3   0.1     0.0054   13.7   0.1    1.2  1  TIGR00260 thrC: threonine synthase


Domain annotation for each model (and alignments):
>> TIGR01124  ilvA_2Cterm: threonine ammonia-lyase, biosynthetic
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  360.9   0.0  2.6e-111  2.1e-108     218     498 ..       2     278 ..       1     279 [. 0.98

  Alignments for each domain:
  == domain 1    score: 360.9 bits;  conditional E-value: 2.6e-111
   TIGR01124 218 kldqvGlfadGvavkevGdetfrlckeylddivlvdtdevcaaikdvfedtravlepaGalalaGlkkyvakkgiedktlvailsGanlnfdrlryvseraelGeqreallavtipeekGsllkfvevlGeraitefnyrladdekahifvGvqlaeeeerkellarleeagykvvdltddelaklhvrylvGGraakvenerlysfefperpGallkfletlqaewnislfhyrnhGadyGrvlvglevpdeeaeefeqflaelgyryedetenpayrlf 498
                 +ld+vGlfadG avk+vG+etfr+c+e++dd+v+v tde+caaikd f dtr+vlepaGala+aG  k++a  + +d t+v+ +sGan+nfd+lryvser++     e+ll+v ipe++G+++k++++l  r++te++yr+ d+ +a +++  q++ + ++++ l+ l + g + +dltd+elak h r+l GGr++  ene +y+fefperpGal++fl+tl+a wn+++fhyrnhG+d Grvl+g++vp+ee+  f++fl++l yry  et+npa + f
  MMETSP1137-20121227|1738_1   2 TLDEVGLFADGAAVKTVGSETFRVCHELVDDMVTVSTDEICAAIKDAFMDTRCVLEPAGALAIAGATKWAAATNTRDSTFVVTTSGANMNFDTLRYVSERTDA---SETLLSVEIPEKPGAFRKLISLLEPRNVTELSYRYRDSGQAIVYLSFQASCPLDKQKALQALGDDGCQAIDLTDNELAKAHARHLAGGRSSV-ENEFIYRFEFPERPGALVTFLDTLNAGWNVTMFHYRNHGSDVGRVLAGIQVPTEEKPLFDDFLQRLHYRYFAETDNPAVKHF 278
                 699*************************************************************************************************975...679**************************************************************************************976.*******************************************************************************998 PP

>> TIGR02079  THD1: threonine dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.7   0.0     6e-27   4.9e-24     221     378 ..       2     153 ..       1     185 [. 0.88
   2 !   18.8   0.0   1.4e-07   0.00012     331     390 ..     204     263 ..     187     275 .. 0.81

  Alignments for each domain:
  == domain 1    score: 82.7 bits;  conditional E-value: 6e-27
   TIGR02079 221 tldkidkfvdGaavkrvGdlnfkalkkvvdevtlveegavcstildlynkegivaePaGalsiaaleels..eeikgktvvcvvsGgnndierleeikersllyeGlkhyflvkfpqraGalreflndvlGPndditkfeyvkksnretGevliGielsd 378
                 tld++  f dGaavk vG+ +f++++++vd++++v+ +++c++i d + +   v+ePaGal+ia+  + +  ++ +++t v+  sG+n ++  l  + er+   e l   + v++p ++Ga+r++++ +l P  ++t++ y     r++G++++ +  ++
  MMETSP1137-20121227|1738_1   2 TLDEVGLFADGAAVKTVGSETFRVCHELVDDMVTVSTDEICAAIKDAFMDTRCVLEPAGALAIAGATKWAaaTNTRDSTFVVTTSGANMNFDTLRYVSERTDASETL---LSVEIPEKPGAFRKLIS-LLEPR-NVTELSYRY---RDSGQAIVYLSFQA 153
                 89**************************************************************999876447889************************9887776...679*************9.99997.599999965...67788888776655 PP

  == domain 2    score: 18.8 bits;  conditional E-value: 1.4e-07
   TIGR02079 331 vkfpqraGalreflndvlGPndditkfeyvkksnretGevliGielsdked..feGllerlk 390
                  +fp r+Gal  fl+  l    ++t f+y  ++  + G vl Gi++ ++e+  f+ +l+rl+
  MMETSP1137-20121227|1738_1 204 FEFPERPGALVTFLD-TLNAGWNVTMFHYR-NHGSDVGRVLAGIQVPTEEKplFDDFLQRLH 263
                 468***********9.7888999******5.67889*********87655433888888875 PP

>> TIGR01127  ilvA_1Cterm: threonine dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.5   0.0     3e-19   2.4e-16     206     329 ..       8     130 ..       2     164 .. 0.84
   2 ?    0.7   0.0     0.055        45     312     372 ..     206     263 ..     192     269 .. 0.75

  Alignments for each domain:
  == domain 1    score: 57.5 bits;  conditional E-value: 3e-19
   TIGR01127 206 tiaDGiavkkpgdltfeivkelvDevvavdeeeiakaillLlerakivaegaGavgvaavleekvd..vkgkkvavvvsGGnidlnllekiiekgLvksgrkvkietvlkDkPGaLkklleviaek 329
                   aDG avk++g+ tf + +elvD++v+v+ +ei+ ai   +  ++ v e+aGa ++a   +      + + + +v  sG n++   l  + e+  +++     +++ +++kPGa++kl+  +  +
  MMETSP1137-20121227|1738_1   8 LFADGAAVKTVGSETFRVCHELVDDMVTVSTDEICAAIKDAFMDTRCVLEPAGALAIAGATKWAAAtnTRDSTFVVTTSGANMNFDTLRYVSERTDASE---TLLSVEIPEKPGAFRKLISLLEPR 130
                 579******************************************************988765544116667788889***********9998865544...4567889*********99887655 PP

  == domain 2    score: 0.7 bits;  conditional E-value: 0.055
   TIGR01127 312 lkDkPGaLkklleviaekranivkiehdrlskeialgaakvelelevkgkehleellktlr 372
                  +++PGaL + l++++ ++ n+   ++ +   ++    a   +++ +++k + ++ l++l+
  MMETSP1137-20121227|1738_1 206 FPERPGALVTFLDTLN-AGWNVTMFHYRNHGSDVGRVLA--GIQVPTEEKPLFDDFLQRLH 263
                 5789*********985.6889988888777776655554..55667777777777777765 PP

>> TIGR02991  ectoine_eutB: ectoine utilization protein EutB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.5   0.1   1.7e-13   1.4e-10     239     312 ..      20      96 ..       4     100 .. 0.83

  Alignments for each domain:
  == domain 1    score: 38.5 bits;  conditional E-value: 1.7e-13
   TIGR02991 239 rvtfalckelldeivllsedeiaagirhayaeereiveGaGavGiaall...aGkikvkGpivvlvsGrnidmdlhk 312
                   tf++c+el+d++v +s dei a+i+ a+++ r ++e aGa+ ia      a   + +   vv  sG n++ d  +
  MMETSP1137-20121227|1738_1  20 SETFRVCHELVDDMVTVSTDEICAAIKDAFMDTRCVLEPAGALAIAGATkwaAATNTRDSTFVVTTSGANMNFDTLR 96 
                 579****************************************99864312144444778899999****9988755 PP

>> TIGR00260  thrC: threonine synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   0.1   6.6e-06    0.0054     262     314 ..      23      74 ..      10      94 .. 0.78

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 6.6e-06
   TIGR00260 262 arrslgnledlkesvsdeeileaikklaeeegyllephtavavaalkklvekg 314
                 +r   + ++d+  +vs +ei  aik +      +lep++a a+a+  k ++++
  MMETSP1137-20121227|1738_1  23 FRVCHELVDDM-VTVSTDEICAAIKDAFMDTRCVLEPAGALAIAGATKWAAAT 74 
                 55555666666.689*********************************99987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (281 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        96  (0.0234032); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.27u 0.18s 00:00:00.45 Elapsed: 00:00:00.42
# Mc/sec: 883.07
//
Query:       MMETSP1137-20121227|1739_1  [L=152]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (152 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        70  (0.0170648); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.14s 00:00:00.31 Elapsed: 00:00:00.41
# Mc/sec: 489.33
//
Query:       MMETSP1137-20121227|1740_1  [L=304]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (304 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        48  (0.0117016); expected 82.0 (0.02)
Passed bias filter:                       35  (0.00853242); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.16s 00:00:00.39 Elapsed: 00:00:00.48
# Mc/sec: 835.93
//
Query:       MMETSP1137-20121227|1742_1  [L=399]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (399 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       118  (0.0287665); expected 82.0 (0.02)
Passed bias filter:                       99  (0.0241346); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.14s 00:00:00.44 Elapsed: 00:00:00.32
# Mc/sec: 1645.74
//
Query:       MMETSP1137-20121227|1743_1  [L=441]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (441 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        74  (0.01804); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.14s 00:00:00.44 Elapsed: 00:00:00.36
# Mc/sec: 1616.87
//
Query:       MMETSP1137-20121227|1744_1  [L=428]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.1e-38  131.1   0.5    1.7e-38  130.4   0.1    1.4  2  TIGR00511 ribulose_e2b2: ribose-1,5-bisphosphate isomerase, e2b2 family
    8.4e-29   98.5   0.0    1.3e-28   97.9   0.0    1.2  1  TIGR00524 eIF-2B_rel: eIF-2B alpha/beta/delta-related uncharacterized proteins
    1.9e-19   67.6   0.1    3.1e-19   67.0   0.1    1.4  1  TIGR00512 salvage_mtnA: S-methyl-5-thioribose-1-phosphate isomerase


Domain annotation for each model (and alignments):
>> TIGR00511  ribulose_e2b2: ribose-1,5-bisphosphate isomerase, e2b2 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  130.4   0.1   1.3e-41   1.7e-38      19     293 ..      32     312 ..      29     320 .. 0.89
   2 ?   -2.7   0.0      0.43   5.9e+02     174     200 ..     327     353 ..     323     358 .. 0.82

  Alignments for each domain:
  == domain 1    score: 130.4 bits;  conditional E-value: 1.3e-41
   TIGR00511  19 riaraaaealkeqaakaeaaseeefkkelreaakllietrPta....vslpn.alryvlkel.sgedveelreevieradefieklekaleklGeiGakrikdGdvvmthCnseaalsviktafeqGkdievivtetrPrkqGhitakelrelGipvtlivdsaaryflkevdkvvvGadaitanGavinkiGtsqlalaakearvsvlvaaetyklsPktllGelveieerdaeevvdeeelkelg..avkvrnPafdvtPaeyidviitekGliPPesavt 293
                 ++  aa +al+e   ++ea+++  +++elr+a++ l   rP a     sl    +r+v++++ + +d ++ ++ +ier + f +++++a   + ++Ga  +  G vv+t   s+  +s + ta    ++ +viv e+ P   Gh  a el+ +G+pvt+i d+a+   +    +v+ Ga+a+   G +i + Gt q+a++a  +++++ vaae+ k++    l ++   e+ + +e ++   +++ +  + k + P+ d tP+ yi +i t+ G++ P+++ +
  MMETSP1137-20121227|1744_1  32 SVCAAAIKALTEDIRRSEATTMMGLRNELRQAGEALR-GRPDApisiASLCElFVRFVTRTAlDVSDFDACKRLLIERGEMFANTAQTARTTVAQLGAPFVPAGGVVLTMGYSRM-VSGVLTAAATSHHFSVIVAESHPHGGGHAMAAELAAAGVPVTMIEDAAVACTMSRCQMVLCGAEAVVESGGIISRTGTYQMAIVAAASKKPFYVAAESTKFARMFPLSQQDLPEHESVREHAAFVGRTDPPppTLKAEKPSRDYTPPCYITMIFTDLGVLTPSAVSD 312
                 5678999****************************97.5776642223454424889988766999999******************************************9986.566667777889******************************************************************************************9999999988899999998888777776534788899***********************98765 PP

  == domain 2    score: -2.7 bits;  conditional E-value: 0.43
   TIGR00511 174 dsaaryflkevdkvvvGadaitanGav 200
                 d aa+   +e+d   v a+ait n + 
  MMETSP1137-20121227|1744_1 327 DKAAQGNQEELDASRVAANAITLNETA 353
                 778888889999999999999998665 PP

>> TIGR00524  eIF-2B_rel: eIF-2B alpha/beta/delta-related uncharacterized proteins
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.9   0.0   9.3e-32   1.3e-28      23     303 .]      34     307 ..      29     307 .. 0.87

  Alignments for each domain:
  == domain 1    score: 97.9 bits;  conditional E-value: 9.3e-32
   TIGR00524  23 gvaaalglalaakkiktvnveefkeklekaadvllssRPtA....vnLsna.lervlkalkssedveevkeslleeaeelieedletnrkiGengaklikdgdtvlthCnaGslatsdygtAlgvirsawedgkeirvialEtRPrlqGsrLtayelveegidvtlitDsavaylikkseidavivGADrivrngdvanKiGtlqlaviakefripFfvaApkstfdtktetG.ediiiEERdpeEvavvegvriaplevkvynpAFDitPaelidaiitEkGvitp 303
                  +aa ++l++  ++ + + +  ++++l++a + l+  RP A     +L    +  v++++ + +d ++ k  l+e+ e +++   ++   + + ga  +  g +vlt+         +y+  ++ + +a   +++  vi  E+ P   G +  a el  +g++vt+i D+ava ++   + ++v+ GA+++v+ g ++ + Gt+q+a++a +++ pF+vaA+ ++f        +d++  E  +e  a+v+ ++  p   k+  p  D tP  +i+ i t+ Gv+tp
  MMETSP1137-20121227|1744_1  34 CAAAIKALTEDIRRSEATTMMGLRNELRQAGEALR-GRPDApisiASLCELfVRFVTRTALDVSDFDACKRLLIERGEMFANTAQTARTTVAQLGAPFVPAGGVVLTM---------GYSRMVSGVLTAAATSHHFSVIVAESHPHGGG-HAMAAELAAAGVPVTMIEDAAVACTMS--RCQMVLCGAEAVVESGGIISRTGTYQMAIVAAASKKPFYVAAESTKFARMFPLSqQDLPEHESVREHAAFVGRTDPPPPTLKAEKPSRDYTPPCYITMIFTDLGVLTP 307
                 4566678888888899999999**********997.588775222234433134466677778999999*************************************96.........67788999999999***************999.88899*********************9..999********************************************98876541677777777788888888888999**************************987 PP

>> TIGR00512  salvage_mtnA: S-methyl-5-thioribose-1-phosphate isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.0   0.1   2.2e-22   3.1e-19     159     334 ..     133     306 ..      18     307 .. 0.79

  Alignments for each domain:
  == domain 1    score: 67.0 bits;  conditional E-value: 2.2e-22
   TIGR00512 159 NtGslAtagyGtAlgvirsakekgllehvyadEtRPlnqGarLtawElvkegipatliaDsmaaallkegevdavivGaDRiaanGDtaNKiGtyqlavlakahgvpflvaaplstiDlelksGeeiviEeRdeeEvtkvsg.vriaakgievynpaFDvtPaelitaiitekGvve 334
                   G + t+gy   ++ + +a+++  +  v + E  P   G  + a El+ +g+p+t+i D ++a +++  + ++v+ Ga+ +++ G +  + Gtyq+a++a a + pf+vaa ++ +       ++   E+ + +E   + g +   ++  ++  p+ D tP   it i t+ Gv++
  MMETSP1137-20121227|1744_1 133 AGGVVLTMGYSRMVSGVLTAAATSHHFSVIVAESHPHGGGHAM-AAELAAAGVPVTMIEDAAVACTMS--RCQMVLCGAEAVVESGGIISRTGTYQMAIVAAASKKPFYVAAESTKFARMFPLSQQDLPEHESVREHAAFVGrTDPPPPTLKAEKPSRDYTPPCYITMIFTDLGVLT 306
                 56888999****9999999999**************9877655.66*********************9..7899*******************************************9999988766667777777766666377888999************************87 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (428 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       189  (0.0460751); expected 82.0 (0.02)
Passed bias filter:                      123  (0.0299854); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.35u 0.19s 00:00:00.54 Elapsed: 00:00:00.42
# Mc/sec: 1345.03
//
Query:       MMETSP1137-20121227|1745_1  [L=489]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (489 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        81  (0.0197465); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.15s 00:00:00.46 Elapsed: 00:00:00.41
# Mc/sec: 1574.21
//
Query:       MMETSP1137-20121227|1746_1  [L=93]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (93 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        74  (0.01804); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.15s 00:00:00.28 Elapsed: 00:00:00.27
# Mc/sec: 454.63
//
Query:       MMETSP1137-20121227|1747_1  [L=109]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (109 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        99  (0.0241346); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.17s 00:00:00.32 Elapsed: 00:00:00.26
# Mc/sec: 553.34
//
Query:       MMETSP1137-20121227|1748_1  [L=75]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (75 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        52  (0.0126767); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.12s 00:00:00.25 Elapsed: 00:00:00.27
# Mc/sec: 366.64
//
Query:       MMETSP1137-20121227|1749_1  [L=303]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.8e-76  252.5   0.0    2.7e-40  135.9   0.0    2.0  2  TIGR02961 allantoicase: allantoicase


Domain annotation for each model (and alignments):
>> TIGR02961  allantoicase: allantoicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  135.9   0.0   6.7e-44   2.7e-40       2     106 ..       2     106 ..       1     133 [. 0.95
   2 !  115.0   0.0   1.6e-37   6.4e-34     197     324 .]     142     295 ..     129     295 .. 0.91

  Alignments for each domain:
  == domain 1    score: 135.9 bits;  conditional E-value: 6.7e-44
   TIGR02961   2 lvdlaseklGgkvlaatDefFaeaenllkkeapifkeekftekGkwmDGWetRRkreaghDwavvrlgvagvikgvdvDtsfFtGnyapavsieaacleeeeeae 106
                 l++la+++lG+kv++atDe+Fa+ae +l++ +p f++++f e+Gk+mDGWe+RR+r +ghDw++++lg+ag i+g++vDt++FtGn  p+v + a+ l++++ ++
  MMETSP1137-20121227|1749_1   2 LTNLADDRLGAKVIFATDEWFAPAEMMLQSAPPKFDPDAFCEQGKVMDGWESRRRRLPGHDWCILELGLAGYIHGIEVDTAYFTGNQVPKVRVLATELSPMHAKD 106
                 68*********************************************************************************************9998877665 PP

  == domain 2    score: 115.0 bits;  conditional E-value: 1.6e-37
   TIGR02961 197 kenliapGraknmgdGWetaRrrd................pGn.dWvivrLga.pgliekievDtahfkGnapdsvkleaaeleseeeeevit......qsakWkellpktklqpdkehvfese..lakakavthvrltiiPDGGvsRlRlfgk 324
                 ++nl+   r++nmg+GWetaR                   pG  dW+++rL a  + i ++ +Dt+hfkGn+p+sv +ea+ + ++++ ++        +  +Wkellp+  l+pd+ehvf+ +  l++  +++h r++i+PDGG+ R+R fgk
  MMETSP1137-20121227|1749_1 142 SRNLLRFERGTNMGEGWETARNPRrpavivknpetglvdmPGArDWCVLRLCAiASGIGELRIDTQHFKGNFPESVLVEACLAPTATSRALLDdsgkssDGVEWKELLPRVCLGPDREHVFTVDsqLRDVGRISHLRVSIYPDGGIMRIRAFGK 295
                 6899*****************87678**************9999*******872569*****************************9998887888887889******************9754449************************996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (303 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        48  (0.0117016); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.27u 0.15s 00:00:00.42 Elapsed: 00:00:00.80
# Mc/sec: 499.91
//
Query:       MMETSP1137-20121227|1750_1  [L=707]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (707 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       219  (0.0533886); expected 82.0 (0.02)
Passed bias filter:                       38  (0.00926377); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.16s 00:00:00.62 Elapsed: 00:00:00.41
# Mc/sec: 2276.01
//
Query:       MMETSP1137-20121227|1751_1  [L=181]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (181 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        72  (0.0175524); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.13s 00:00:00.33 Elapsed: 00:00:00.26
# Mc/sec: 918.85
//
Query:       MMETSP1137-20121227|1752_1  [L=222]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (222 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        67  (0.0163335); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.13s 00:00:00.33 Elapsed: 00:00:00.32
# Mc/sec: 915.67
//
Query:       MMETSP1137-20121227|1754_1  [L=1383]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.5e-10   36.0   8.4    1.6e-09   35.2   5.8    1.3  1  TIGR03122 one_C_dehyd_C: formylmethanofuran dehydrogenase subunit C


Domain annotation for each model (and alignments):
>> TIGR03122  one_C_dehyd_C: formylmethanofuran dehydrogenase subunit C
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.2   5.8   3.9e-13   1.6e-09      82     229 ..    1110    1259 ..    1091    1286 .. 0.80

  Alignments for each domain:
  == domain 1    score: 35.2 bits;  conditional E-value: 3.9e-13
   TIGR03122   82 eivvegdvgahvGaemkgG.kivvegnadswlgaemkgGeievkGnagdyv...Gsayrgekr..GmsgGkiiveGnagdelGelmrrGeiliegnagilagaemngGtiaveGkvgervgaemkkGtivvggkveellpsFkkegekekallk 229 
                  +i+  g +g+  Ga   +G + +v g+a++++++ m+gG i+vk  a+       + + g+ +  G +gGk   +G ag++   + ++ + ++eg  g  +   m+gG+++v Gk+g+ +ga+m  G   + ++    ++++  ++ ++  ++k
  MMETSP1137-20121227|1754_1 1110 DITFTGCAGQSFGAFAVDGlEYTVIGDANDYVAKGMHGGRIVVKPPADAAFdpsEAVVVGNTClyGATGGKFFARGRAGERFAVRNSNAQAVVEGT-GDHCCEYMTGGVVVVLGKIGRNAGAGMTGGLAYLLEEE---EEGYDVASRVNPEVVK 1259
                  35667999*****987777589999*******************988865411156678887555*****************************96.6678899***********************88776654...4555555555555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1383 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       116  (0.0282789); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.80u 0.17s 00:00:00.97 Elapsed: 00:00:00.66
# Mc/sec: 2765.77
//
Query:       MMETSP1137-20121227|1755_1  [L=308]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (308 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        86  (0.0209654); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.17s 00:00:00.41 Elapsed: 00:00:00.37
# Mc/sec: 1098.72
//
Query:       MMETSP1137-20121227|1756_1  [L=139]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (139 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        82  (0.0199902); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.30
# Mc/sec: 611.55
//
Query:       MMETSP1137-20121227|1757_1  [L=318]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (318 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.12s 00:00:00.37 Elapsed: 00:00:00.37
# Mc/sec: 1134.39
//
Query:       MMETSP1137-20121227|1758_1  [L=590]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (590 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       196  (0.0477816); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.17s 00:00:00.57 Elapsed: 00:00:00.50
# Mc/sec: 1557.47
//
Query:       MMETSP1137-20121227|1759_1  [L=270]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0058   13.4   0.0     0.0077   13.0   0.0    1.2  1  TIGR02037 degP_htrA_DO: peptidase Do
  ------ inclusion threshold ------
      0.038   11.0   0.0       0.05   10.5   0.0    1.2  1  TIGR02038 protease_degS: periplasmic serine peptidase DegS


Domain annotation for each model (and alignments):
>> TIGR02037  degP_htrA_DO: peptidase Do
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   0.0   3.8e-06    0.0077     258     288 ..     102     132 ..      98     179 .. 0.84

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 3.8e-06
   TIGR02037 258 akGalvaevlkgspAekaGlkaGDvilkvng 288
                 a+G +v +v+++s A + G ++GDvi++++ 
  MMETSP1137-20121227|1759_1 102 AQGGIVCSVTPDSQAWNCGFRSGDVIISIET 132
                 68999*********************99975 PP

>> TIGR02038  protease_degS: periplasmic serine peptidase DegS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   2.5e-05      0.05     277     309 ..     102     134 ..      91     170 .. 0.85

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 2.5e-05
   TIGR02038 277 lrgivvtevdPngPaaragllvrdvilkldnke 309
                  +g +v  v P++ a ++g++  dvi++++   
  MMETSP1137-20121227|1759_1 102 AQGGIVCSVTPDSQAWNCGFRSGDVIISIETAT 134
                 478899**********************98754 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (270 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        86  (0.0209654); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.24u 0.16s 00:00:00.40 Elapsed: 00:00:00.45
# Mc/sec: 791.93
//
Query:       MMETSP1137-20121227|1760_1  [L=196]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (196 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       128  (0.0312043); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.16s 00:00:00.36 Elapsed: 00:00:00.28
# Mc/sec: 892.06
//
Query:       MMETSP1137-20121227|1761_1  [L=233]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (233 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       110  (0.0268162); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.14s 00:00:00.37 Elapsed: 00:00:00.31
# Mc/sec: 992.05
//
Query:       MMETSP1137-20121227|1762_1  [L=223]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.3e-07   30.3   0.0    1.9e-07   29.8   0.0    1.2  1  TIGR01681 HAD-SF-IIIC: HAD phosphatase, family IIIC
      4e-05   20.7   0.0    0.00019   18.5   0.0    1.8  1  TIGR01686 FkbH: FkbH domain
    0.00067   17.7   0.3     0.0079   14.2   0.0    2.2  2  TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3
     0.0024   15.5   0.0     0.0039   14.8   0.0    1.3  1  TIGR01993 Pyr-5-nucltdase: pyrimidine 5'-nucleotidase


Domain annotation for each model (and alignments):
>> TIGR01681  HAD-SF-IIIC: HAD phosphatase, family IIIC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.8   0.0   1.8e-10   1.9e-07       1     131 [.      68     199 ..      68     200 .. 0.82

  Alignments for each domain:
  == domain 1    score: 29.8 bits;  conditional E-value: 1.8e-10
   TIGR01681   1 kvivfDlDnTLwtdeedvvkedp.iedieltevtikeirdvLqelkknGvllalaSknddeevakellkiked.Yfd..vilpkaelfldltigkrlpKskrlveilkklnsvlklksilfvDDlavnneevdky 131
                 +v+v+D D TL  +e  + ++++    + + e +i+++   L+e    Gv  a+ S nd++ + k+l ++ +  +fd  +il   e  +d   +    K   +++++ +   ++  +++lfvDD+++n+ e++++
  MMETSP1137-20121227|1762_1  68 RVLVLDFDXTLACEEVSLLGSKEhAVVVFGGEKRIDALSSMLAEVISAGVTPAICSFNDKKIIGKSLAAVGLRkFFDgrFILGYGECLTDN--NPTRIKGRAIEQAIMRPL-DVAAENVLFVDDNPRNISEFQSF 199
                 59***************99999834444555666******************************************987555344444443..334468888888777776.8******************9987 PP

>> TIGR01686  FkbH: FkbH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.0   1.8e-07   0.00019       4     127 ..      68     204 ..      66     217 .. 0.70

  Alignments for each domain:
  == domain 1    score: 18.5 bits;  conditional E-value: 1.8e-07
   TIGR01686   4 KvlvlDlDnTLwg...GvvgedgveavdLse..lrktlqekivtlkkqGvLlalaSkNdeddvkevler...rk....dsll.kaedfsllsiaWePKseslrk.iAkklNlgtdsllFiDDnpaElaevkielPvvt 127
                 +vlvlD D TL       +g ++   v+  +  + + l   + +   +Gv  a+ S Nd++ + + l     rk     ++l   e ++        K+  + + i + l ++ + +lF+DDnp  + e ++ lP+ +
  MMETSP1137-20121227|1762_1  68 RVLVLDFDXTLACeevSLLGSKEHAVVVFGGekRIDALSSMLAEVISAGVTPAICSFNDKKIIGKSLAAvglRKffdgRFILgYGECLTD-NNPTRIKGRAIEQaIMRPLDVAAENVLFVDDNPRNISEFQSFLPSAK 204
                 79*********75222456777776666664457899***********************988766654111111111233303333333.333345899997637899**************************543 PP

>> TIGR01509  HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.0     0.068        70       2      24 ..      70      92 ..      69     103 .. 0.86
   2 !   14.2   0.0   7.7e-06    0.0079     118     146 ..     170     198 ..     134     199 .. 0.89

  Alignments for each domain:
  == domain 1    score: 1.4 bits;  conditional E-value: 0.068
   TIGR01509  2 ilFDlDgvLvdtekglvpeelka 24
                ++ D+D +L + e +l++ + +a
  MMETSP1137-20121227|1762_1 70 LVLDFDXTLACEEVSLLGSKEHA 92
                789********999999887765 PP

  == domain 2    score: 14.2 bits;  conditional E-value: 7.7e-06
   TIGR01509 118 lqalkklglkpeeclfvdDsaagieaaka 146
                 ++ ++ l++++e++lfvdD++++i ++++
  MMETSP1137-20121227|1762_1 170 QAIMRPLDVAAENVLFVDDNPRNISEFQS 198
                 5668899*****************98875 PP

>> TIGR01993  Pyr-5-nucltdase: pyrimidine 5'-nucleotidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   3.8e-06    0.0039     102     172 ..     121     195 ..     100     205 .. 0.78

  Alignments for each domain:
  == domain 1    score: 14.8 bits;  conditional E-value: 3.8e-06
   TIGR01993 102 iftNadkahaeralkrLgiedcFdgiidieaanlelilKPsp...eaye.kalreagvdpekaifldDsarNiaa 172
                 i +  dk+ + ++l++ g+ + Fdg + + + +      P++    a+e +++r  +v +e+ +f+dD  rNi  
  MMETSP1137-20121227|1762_1 121 ICSFNDKKIIGKSLAAVGLRKFFDGRFILGYGECLTDNNPTRikgRAIEqAIMRPLDVAAENVLFVDDNPRNISE 195
                 555668888999*************99887777664445543222566615689999****************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (223 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       102  (0.0248659); expected 82.0 (0.02)
Passed bias filter:                      101  (0.0246221); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.24u 0.17s 00:00:00.41 Elapsed: 00:00:00.56
# Mc/sec: 525.60
//
Query:       MMETSP1137-20121227|1763_1  [L=134]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.04   12.4   1.1       0.11   11.0   0.8    1.6  2  TIGR01725 phge_HK97_gp10: phage protein, HK97 gp10 family


Domain annotation for each model (and alignments):
>> TIGR01725  phge_HK97_gp10: phage protein, HK97 gp10 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0       0.2     8e+02      93     108 ..      34      49 ..      14      58 .. 0.65
   2 ?   11.0   0.8   2.6e-05      0.11       6      47 ..      66     106 ..      62     127 .. 0.81

  Alignments for each domain:
  == domain 1    score: -1.5 bits;  conditional E-value: 0.2
   TIGR01725  93 qpFlrkalkqnkekvi 108
                 q+ ++ka +++  +++
  MMETSP1137-20121227|1763_1  34 QHCMSKAEQGQSTDAV 49 
                 5555555555555444 PP

  == domain 2    score: 11.0 bits;  conditional E-value: 2.6e-05
   TIGR01725   6 eliqklekvgkevkakaerkalkaganviraaaksnapvekg 47 
                  +++kle+  + v+++ae++a k++a+ +r+a ++ ++ +k 
  MMETSP1137-20121227|1763_1  66 GALKKLEAHREAVQQRAEKEAAKEAAI-QRKAKEASEVLRKL 106
                 5799***********************.88888888876554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (134 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       265  (0.0646026); expected 82.0 (0.02)
Passed bias filter:                      154  (0.0375427); expected 82.0 (0.02)
Passed Vit filter:                        18  (0.0043881); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.17u 0.16s 00:00:00.33 Elapsed: 00:00:00.45
# Mc/sec: 393.03
//
Query:       MMETSP1137-20121227|1764_1  [L=314]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   4.9e-110  365.3   0.0   5.6e-110  365.1   0.0    1.0  1  TIGR01249 pro_imino_pep_1: prolyl aminopeptidase
    9.7e-22   75.7   0.0    3.6e-18   64.0   0.0    2.1  2  TIGR01250 pro_imino_pep_2: proline-specific peptidases
      8e-13   46.2   0.0    2.3e-08   31.6   0.0    2.4  2  TIGR02427 protocat_pcaD: 3-oxoadipate enol-lactonase
    1.5e-11   42.0   0.0    9.1e-09   32.9   0.0    2.2  2  TIGR03611 RutD: pyrimidine utilization protein D
    8.9e-10   36.1   0.0    1.7e-09   35.1   0.0    1.4  1  TIGR03343 biphenyl_bphD: 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase
    2.7e-07   28.1   0.0    4.1e-06   24.2   0.0    2.1  2  TIGR03695 menH_SHCHC: 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase
      2e-05   21.6   0.3    0.00096   16.1   0.0    2.1  2  TIGR03056 bchO_mg_che_rel: putative magnesium chelatase accessory protein
    2.4e-05   21.9   0.1      0.042   11.3   0.0    2.2  2  TIGR01738 bioH: putative pimeloyl-BioC--CoA transferase BioH
     0.0077   13.2   0.0      0.013   12.5   0.0    1.3  1  TIGR01392 homoserO_Ac_trn: homoserine O-acetyltransferase


Domain annotation for each model (and alignments):
>> TIGR01249  pro_imino_pep_1: prolyl aminopeptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  365.1   0.0  1.2e-112  5.6e-110       2     306 ..       9     312 ..       8     313 .. 0.94

  Alignments for each domain:
  == domain 1    score: 365.1 bits;  conditional E-value: 1.2e-112
   TIGR01249   2 kpfekGylkvsdvhqlyyeesGnPdGkPvvflhGGPGsGtdeecrkffdpevyrivlldqrGaGkskphaileenttwdlvadieklreklkikkWlvfGGsWGstlalayaqkhPekvtklvlrgifllrkkelewlyegglasalyPdewerfvdsipeaerneqlveayhkrlqsedeevklaaakaWadWes.tallrlekeevskaedaklslalarlenhyfvnkgflesenalldniskikniktvivqGrydlvcPlqsalalkkaf.PeaelkvvqdaGhsasdpnlvaalvvalekl 306
                 +p + G+l v++ h+lyyee+GnP+GkP ++lhGGPG+G++ + r+++dp  yrivl+dqrG+Gks+p  +le n tw lv+die lre+lk+ +W+v+GGsWG+tlalaya++hP +vt+++lrg+fl    ele++y + +++ +yP+e+      +p aer  +lv+a+ kr++s+de+++ +aa+aW  We   + lr  +  v+ +  ++ ++a +r+  hy+ n+gf+  +  lld +++i++ ++ iv+Gryd+vcP   a+ l++       l  v+daGhs+++p  v+alv a+e++
  MMETSP1137-20121227|1764_1   9 QPRVTGMLLVGNGHELYYEEAGNPQGKPALYLHGGPGAGCSGQQRRYHDPAAYRIVLFDQRGCGKSRPLGMLEGNDTWALVQDIEALREHLKVDRWQVMGGSWGTTLALAYAISHPSRVTEIILRGVFLFTTAELEYIYSEQATALIYPEEYAALQSHVPAAER-GNLVSAFRKRIMSDDESTRVSAARAWGAWEDaISTLR--PSGVQDTRTDEEAVAETRIHLHYMWNRGFFAHDGWLLDHVHEIAHLPVRIVHGRYDVVCPPAAAWRLHQKLlDTSTLTFVPDAGHSGFEPATVDALVSATEEF 312
                 67899*****************************************************************************************************************************************9*********************.89****************************8444444..45555555555567789**************************************************987615678************************987 PP

>> TIGR01250  pro_imino_pep_2: proline-specific peptidases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.0   0.0   7.8e-21   3.6e-18       4     128 ..      13     134 ..      11     165 .. 0.82
   2 !    9.6   0.0   0.00029      0.13     225     272 ..     247     297 ..     240     304 .. 0.80

  Alignments for each domain:
  == domain 1    score: 64.0 bits;  conditional E-value: 7.8e-21
   TIGR01250   4 ekiitldggyvlftkvkeegekikllvlHGGPgssheyleslkellkegvevilYDQLGsgkSdqPddsd.eklltidrfvdEleevrekLaldkfyllgqSwGglLaqeYalkyqqhlkgliiss 128
                 ++++ + +g+ l+ +  ++ ++ + l lHGGPg  +   +   +  +   +++l+DQ G+gkS      + ++ +     v+++e++re+L++d+  ++g SwG++La++Ya+  ++ +  +i+ +
  MMETSP1137-20121227|1764_1  13 TGMLLVGNGHELYYEEAGNPQGKPALYLHGGPGAGCSGQQRRYHDPA-AYRIVLFDQRGCGKSRPLGMLEgNDTW---ALVQDIEALREHLKVDRWQVMGGSWGTTLALAYAISHPSRVTEIILRG 134
                 56667777777777777777799*************97665444444.59************9644332224444...46***************************************9999876 PP

  == domain 2    score: 9.6 bits;  conditional E-value: 0.00029
   TIGR01250 225 dklkeIk.vPtLltvgefdem.tpeaa.remqekiaksrlvvfedgshltm 272
                 d+++eI+ +P  ++ g++d + +p aa r  q+ +  s l++++d++h  +
  MMETSP1137-20121227|1764_1 247 DHVHEIAhLPVRIVHGRYDVVcPPAAAwRLHQKLLDTSTLTFVPDAGHSGF 297
                 889999658**********861555553566788999***********765 PP

>> TIGR02427  protocat_pcaD: 3-oxoadipate enol-lactonase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.6   0.0   5.1e-11   2.3e-08       2     109 ..      24     132 ..      23     143 .. 0.85
   2 !   12.2   0.0   4.2e-05     0.019     185     232 ..     245     294 ..     240     309 .. 0.80

  Alignments for each domain:
  == domain 1    score: 31.6 bits;  conditional E-value: 5.1e-11
   TIGR02427   2 lhyrlegaeadkpvlvlinSLGtdlrlwdkvlealtkdfrvlryDkrGHGlS...dvpegpysiedladdvlallDalgiekaavcGlSlGGliaqaLaarrpdrvealvl 109
                 l+y+  g+ ++kp+l l +  G+  +  +   +   + +r++ +D+rG G+S    + eg+     l++d+ al ++l++++ +v+G S G  +a+a a+ +p rv++++l
  MMETSP1137-20121227|1764_1  24 LYYEEAGNPQGKPALYLHGGPGAGCSGQQRRYHD-PAAYRIVLFDQRGCGKSrplGMLEGND-TWALVQDIEALREHLKVDRWQVMGGSWGTTLALAYAISHPSRVTEIIL 132
                 8999999999999999999999988866655544.678**************5333444443.44699****************************************998 PP

  == domain 2    score: 12.2 bits;  conditional E-value: 4.2e-05
   TIGR02427 185 lrerleeia.vPtlviaGdeDgstPpelvreiad.lvpgarfaeieeaaH 232
                 l ++++eia +P++++ G+ D+++Pp+ + ++ + l+  ++++ +++a+H
  MMETSP1137-20121227|1764_1 245 LLDHVHEIAhLPVRIVHGRYDVVCPPAAAWRLHQkLLDTSTLTFVPDAGH 294
                 56788888548****************87777651556677888899999 PP

>> TIGR03611  RutD: pyrimidine utilization protein D
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.9   0.0     2e-11   9.1e-09      39     110 ..      60     132 ..      40     143 .. 0.91
   2 !    6.9   0.0    0.0017      0.77     193     238 ..     248     295 ..     236     308 .. 0.85

  Alignments for each domain:
  == domain 1    score: 32.9 bits;  conditional E-value: 2e-11
   TIGR03611  39 efrvvvyDhrGtgrs.peelaedysiaalaadvlelldaldiekahvvGhalGgliglelalrkperlaklvl 110
                  +r+v++D+rG+g+s p  + e+ +  al +d+ +l ++l++++ +v+G + G+ ++l  a ++p+r+++++l
  MMETSP1137-20121227|1764_1  60 AYRIVLFDQRGCGKSrPLGMLEGNDTWALVQDIEALREHLKVDRWQVMGGSWGTTLALAYAISHPSRVTEIIL 132
                 69***********99345678899999******************************************9986 PP

  == domain 2    score: 6.9 bits;  conditional E-value: 0.0017
   TIGR03611 193 rldri.klpvlliaakDDlLvPytqsseLaekLPd.aelklleyGgha 238
                 ++++i +lpv ++  + D++ P +++ +L++kL d ++l+ ++  gh+
  MMETSP1137-20121227|1764_1 248 HVHEIaHLPVRIVHGRYDVVCPPAAAWRLHQKLLDtSTLTFVPDAGHS 295
                 56677689**********************998763689999999996 PP

>> TIGR03343  biphenyl_bphD: 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.1   0.0   3.7e-12   1.7e-09      21     133 ..      23     134 ..      18     149 .. 0.83

  Alignments for each domain:
  == domain 1    score: 35.1 bits;  conditional E-value: 3.7e-12
   TIGR03343  21 rihyneage..geavimlhgggpgaggwsnyyrniealvdagyrvilkdapgfnksdevvmdeqr.glvnaravkglmdaldiekahlvgnsmggatalnfaleypdrlgklilmg 133
                 +++y+eag+  g+  + lhgg pgag   +  r  ++   a yr++l d  g  ks  + m e        + +  l + l++++ +++g s g + al +a+ +p r+ ++il g
  MMETSP1137-20121227|1764_1  23 ELYYEEAGNpqGKPALYLHGG-PGAGCSGQQRRYHDP---AAYRIVLFDQRGCGKSRPLGMLEGNdTWALVQDIEALREHLKVDRWQVMGGSWGTTLALAYAISHPSRVTEIILRG 134
                 6899***95448899999975.777655555554444...89***************9988665415566789****************************************988 PP

>> TIGR03695  menH_SHCHC: 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.2   0.0   8.9e-09   4.1e-06       6     103 ..      38     134 ..      33     137 .. 0.89
   2 ?    1.6   0.0     0.072        33     182     234 ..     240     295 ..     213     308 .. 0.77

  Alignments for each domain:
  == domain 1    score: 24.2 bits;  conditional E-value: 8.9e-09
   TIGR03695   6 vlLHGflgskedwqalieeleekfsvlalDLpgHGkskslkekeakdfeeaaqellkelleklkiekviLvGYSlGGRialalaleaperlegliles 103
                 + LHG  g + + q+   +  + ++++++D  g Gks+ l   e +d+ + +q+ ++ l e+lk ++  ++G S G  +ala+a+ +p+r++++il +
  MMETSP1137-20121227|1764_1  38 LYLHGGPGAGCSGQQRRYHDPAAYRIVLFDQRGCGKSRPLGMLEGNDTWALVQD-IEALREHLKVDRWQVMGGSWGTTLALAYAISHPSRVTEIILRG 134
                 677877777776666666666889****************99************.99**************************************976 PP

  == domain 2    score: 1.6 bits;  conditional E-value: 0.072
   TIGR03695 182 gkqpslweklkel.klpvlylvGekDekFkkia..kemqkllpalklevieeaGHn 234
                 ++   l+++++e+ +lpv +++G +D      a  +  qkll +++l+ +++aGH 
  MMETSP1137-20121227|1764_1 240 AHDGWLLDHVHEIaHLPVRIVHGRYDVVCPPAAawRLHQKLLDTSTLTFVPDAGHS 295
                 5566778888887578999999999988765552245677889999*********7 PP

>> TIGR03056  bchO_mg_che_rel: putative magnesium chelatase accessory protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0   2.1e-06   0.00096      15     118 ..      21     125 ..      11     136 .. 0.86
   2 ?    3.6   0.0     0.014       6.2     220     265 ..     254     300 ..     240     312 .. 0.78

  Alignments for each domain:
  == domain 1    score: 16.1 bits;  conditional E-value: 2.1e-06
   TIGR03056  15 pfdWlvrdeGpaaGPvllllhGagasshsfrklvpllaarfrvvapdlPGhGftra.tarfrfslkamaedlakllaaedlsPdaviGhsaGaaialrlaldlpv 118
                 +++ + ++ G+ +G  +l lhG  +++ s ++      a +r+v  d  G G +r  ++       a+ +d+ +l +++++    v+G s G+++al  a   p 
  MMETSP1137-20121227|1764_1  21 GHELYYEEAGNPQGKPALYLHGGPGAGCSGQQRRYHDPAAYRIVLFDQRGCGKSRPlGMLEGNDTWALVQDIEALREHLKVDRWQVMGGSWGTTLALAYAISHPS 125
                 678888999*99**99******999999988888888899***************73455566778999***************************999988775 PP

  == domain 2    score: 3.6 bits;  conditional E-value: 0.014
   TIGR03056 220 avPvlliageedkavppdvskeaatr.lplatlrevpGlGhlvheed 265
                   Pv ++ g  d   pp  + ++ ++ l ++tl+ vp +Gh   e +
  MMETSP1137-20121227|1764_1 254 HLPVRIVHGRYDVVCPPAAAWRLHQKlLDTSTLTFVPDAGHSGFEPA 300
                 4799****************9997652789***********877743 PP

>> TIGR01738  bioH: putative pimeloyl-BioC--CoA transferase BioH
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.3   0.0   9.1e-05     0.042      26     108 ..      56     145 ..      32     179 .. 0.74
   2 !    8.9   0.0    0.0005      0.23     188     230 ..     254     297 ..     242     313 .. 0.76

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 9.1e-05
   TIGR01738  26 eLsahftlslvDLPGyGdsaelral......slaevaeailaqap.akaiwlGWsLGGLvalhlalthpdkvrsLvlvasspkfaaredw 108
                 + +a +++ l D  G G+s+ l  l      +l + +ea+ ++   ++  ++G s G  +al  a+ hp +v +++l   +   +a+ ++
  MMETSP1137-20121227|1764_1  56 HDPAAYRIVLFDQRGCGKSRPLGMLegndtwALVQDIEALREHLKvDRWQVMGGSWGTTLALAYAISHPSRVTEIILRGVFLFTTAELEY 145
                 5578899999999999999877655222111566677888888652446789***********************998777666666666 PP

  == domain 2    score: 8.9 bits;  conditional E-value: 0.0005
   TIGR01738 188 svPvLrlyGqkDalvPakvvealdk.lapqsellvlekaahaPf 230
                  +Pv  ++G+ D + P++ +  l++ l+ +s l  + +a+h+ f
  MMETSP1137-20121227|1764_1 254 HLPVRIVHGRYDVVCPPAAAWRLHQkLLDTSTLTFVPDAGHSGF 297
                 479999**********9999888761566788888899***988 PP

>> TIGR01392  homoserO_Ac_trn: homoserine O-acetyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.5   0.0   2.8e-05     0.013     118     159 ..      93     133 ..      85     162 .. 0.83

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 2.8e-05
   TIGR01392 118 kalldsLgveklaavvGgSlGGmqalewalsypervkkivvl 159
                 +al ++L v++++ v+GgS G   al +a+s p rv++i+  
  MMETSP1137-20121227|1764_1  93 EALREHLKVDRWQ-VMGGSWGTTLALAYAISHPSRVTEIILR 133
                 578899*****75.89*********************99865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (314 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       105  (0.0255973); expected 82.0 (0.02)
Passed bias filter:                       98  (0.0238908); expected 82.0 (0.02)
Passed Vit filter:                        20  (0.00487567); expected 4.1 (0.001)
Passed Fwd filter:                         9  (0.00219405); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.29u 0.16s 00:00:00.44 Elapsed: 00:00:00.41
# Mc/sec: 1010.84
//
Query:       MMETSP1137-20121227|1765_1  [L=55]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        56  (0.0136519); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:00.24
# Mc/sec: 302.48
//
Query:       MMETSP1137-20121227|1766_1  [L=702]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   1.1e-159  531.3   0.0   1.4e-159  530.9   0.0    1.0  1  TIGR01967 DEAH_box_HrpA: ATP-dependent helicase HrpA
   3.6e-101  337.7   0.0   1.2e-100  335.8   0.0    1.7  1  TIGR01970 DEAH_box_HrpB: ATP-dependent helicase HrpB
     0.0016   15.4   0.1     0.0026   14.7   0.0    1.2  1  TIGR02788 VirB11: P-type DNA transfer ATPase VirB11
     0.0045   14.0   0.4       0.19    8.6   0.0    2.9  3  TIGR01587 cas3_core: CRISPR-associated helicase Cas3
     0.0074   14.1   0.0      0.014   13.2   0.0    1.4  1  TIGR03499 FlhF: flagellar biosynthesis protein FlhF
  ------ inclusion threshold ------
      0.011   13.1   0.4      0.032   11.6   0.0    1.9  2  TIGR03880 KaiC_arch_3: KaiC domain protein, AF_0351 family
      0.014   12.5   0.1      0.025   11.7   0.0    1.3  1  TIGR02782 TrbB_P: P-type conjugative transfer ATPase TrbB
      0.025   11.6   0.0      0.048   10.6   0.0    1.4  1  TIGR03819 heli_sec_ATPase: helicase/secretion neighborhood ATPase


Domain annotation for each model (and alignments):
>> TIGR01967  DEAH_box_HrpA: ATP-dependent helicase HrpA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  530.9   0.0  2.7e-162  1.4e-159      64     690 ..      51     668 ..      40     682 .. 0.91

  Alignments for each domain:
  == domain 1    score: 530.9 bits;  conditional E-value: 2.7e-162
   TIGR01967  64 dnlPvsakrediakaiaenqvviiaGetGsGkttqlPkiclelGrGsrGlightqPrrlaarsvaervaeelgtplGevvGykvrfedqvseetlvklltdGillaelqqdrflerydtiiideaherslnidfllGylkellkrrPdlkiiitsatidverfskhfnnaPiievsGrtyPvevryrPleeeqedeidldqleallaavdel.veeekGdiliflpGereirdaaeal....r..krklrhveilPlyarlsaeeqqrvfqph..sgrrivlatnvaetsltvPgiryvidtGtarisrysyrtkvqrlPiepisqasanqrkGrcGrvaeGicirlyseedfnsrPeftd.PeilrtnlasvilqmlalrlGdiaafPfieaPdkrairdGlrlleeldalkedeaeikltpiGrqlaqlPvdPrlarmlleaerlgclqevliiasalsiqdprerPlekkqaadqaharfkdvesdflalvklWryleeqrkalsanalrkklkkeylnylrvreWqdlvrqlkqvvkelglkvneepadydaihkallsGllsqiGakdekkeysGarn.rkflifPgselakksPkwvmaaelvetsklyarlvakiePeWveevaahlikkn 690
                  +lP+ + ++++ +a++enqv+++ GetGsGkttq+ +   e G   rG+ig tqPrr+aa sv++rvaee+g  lG+ vGy +rfed  s+et++k +tdG+ll e   d  l+ry  i++deaher++  d l+G+lk ll rr dlk+i tsat+d e++s++f + Pi  + GrtyPvev y        +  ++d ++a l +v ++ + e +Gd+l+fl+ e +   a ++l    +   ++l +  ilP+y+ l +e q r+f+p     r++v+atn+ae+slt+ gi yv+d+G  +   y  +  +  l + pisqasa qr Gr Gr ++G c rly e+ +++    t  Pei rtnl   +lqm+a+++ d a++   +aP  +++   ++ l  l+al+e+     lt +Gr +a++P++P ++++l+++  lgc +evl +++ ls+q+   rP+ek+++ad +  +f ++e d l+++ +++   + +    +n    ++ +++++   +r  qd+ +ql  ++   +l+v ++  +y+++ ka+ sG + +   kd ++ y+   + +  +i+P+s l++++P+wv+  elv t+k y r v  ieP+W+ e+a+ + + +
  MMETSP1137-20121227|1766_1  51 ASLPIYSLKQELINAVKENQVLVVIGETGSGKTTQMTQYMAEAGFTARGIIGCTQPRRVAAMSVSKRVAEEFGCRLGQEVGYCIRFEDCTSSETVIKYMTDGMLLRECLVDTDLSRYSLIMLDEAHERTIHTDVLFGLLKGLLARRKDLKLICTSATLDAEKYSTYFFECPIFTIPGRTYPVEVLYTKT-----P--ETDYMDAALITVMQIhLSEPPGDVLLFLTXEID--TACQILfermKslGNNLPELIILPVYSALPSEMQTRIFEPAppGARKVVVATNIAEASLTIDGIYYVVDPGFVKQKCYNAKVGMDSLVVVPISQASARQRAGRAGRTGPGKCYRLYTEQAYKNEMLPTSvPEIQRTNLGNTVLQMKAMGVNDXAQLR--HAPPVQTLVAAMESLFALGALDEEG---LLTRLGRRMAEFPLEPPMSKILIQSVDLGCSEEVLTLVAMLSVQNIWYRPKEKQAQADSKRSKFFQPEGDHLTMLAVYQAWANAK---FSN---PWCFENFIQSRTMRKAQDVRKQLLTIMDRYKLEVVSAGKNYTKVRKAICSGYFMHAAKKDPQEGYKTMDEgQIVYIHPSSALFNRNPEWVIYHELVLTTKEYMREVMAIEPKWLIELAPRFFQTS 668
                 68***************************************************************************************************************************************************************************************9632.....2..346677766666666156667*******98755..455554211131134677889*****************9863368****************************************************************************999887755***********************9986..68888899999***********999...9***************************************************************************998765433...233...49***************************************************************9987615578*******************************************9987543 PP

>> TIGR01970  DEAH_box_HrpB: ATP-dependent helicase HrpB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  335.8   0.0  2.4e-103  1.2e-100       1     452 [.      53     506 ..      53     683 .. 0.86

  Alignments for each domain:
  == domain 1    score: 335.8 bits;  conditional E-value: 2.4e-103
   TIGR01970   1 lPieavlPklrdalaakpqvvLeappGaGkstalPLalLdapwligrkiilLePrrlaaravaerlaselgeevGetvGyrvrlenkvsaktrlevvteGiltrmlqdDPeLegvdllifDefhersldaDlaLalaldvqsalreDLkilimsatLdgerlselldeapvveseGrsfPveirylplredealedrvaraveealaeesgsvLvfLPGqaeirrveeaLaerlda.....sevelcPLyGeleleaqdraikpaaaGrrkvvLatniaetsltieGvrvviDsglarvarfdpksGltrLetkrisqasadqraGraGrlepGvclrLwseeq.aerlaaaaepeilqadLaglalelarWGak.psdlrfldaPPaaalaaakeLLqrlgaldaegkltahGkalaeLgvePrlaalllsakseeeaalaaelaalLeerdlerkgg 452
                 lPi ++  +l +a++ ++ +v+   +G+Gk+t++   + +a++++ + i    Prr+aa +v++r+a+e g + G++vGy +r+e ++s++t +  +t+G+l r  + D  L++ +l+++De her +++D+   l  ++  a r DLk++  satLd e+ s+ + e p+ +  Gr++Pve+ y+++ e++ ++ ++ + ++  l e +g+vL+fL    ei  + + L er+++     +e+ ++P+y +l+ e q r+ +pa+ G rkvv+atniae+slti+G+  v+D g+ ++  ++ k G+  L ++ isqasa qraGraGr+ pG c+rL++e+  ++++  ++ pei +++L + +l++ + G++  ++lr  +aPP+ +l+aa e L  lgald eg lt  G+++ae ++eP ++++l+++ + +  ++ ++l a+L  +++  + +
  MMETSP1137-20121227|1766_1  53 LPIYSLKQELINAVKENQVLVVIGETGSGKTTQMTQYMAEAGFTARGIIGCTQPRRVAAMSVSKRVAEEFGCRLGQEVGYCIRFEDCTSSETVIKYMTDGMLLRECLVDTDLSRYSLIMLDEAHERTIHTDVLFGLL-KGLLARRKDLKLICTSATLDAEKYSTYFFECPIFTIPGRTYPVEVLYTKTPETDYMDAALITVMQIHLSEPPGDVLLFLT--XEIDTACQILFERMKSlgnnlPELIILPVYSALPSEMQTRIFEPAPPGARKVVVATNIAEASLTIDGIYYVVDPGFVKQKCYNAKVGMDSLVVVPISQASARQRAGRAGRTGPGKCYRLYTEQAyKNEMLPTSVPEIQRTNLGNTVLQMKAMGVNdXAQLR--HAPPVQTLVAAMESLFALGALDEEGLLTRLGRRMAEFPLEPPMSKILIQSVDLGCSEEVLTLVAMLSVQNIWYRPK 506
                 8999**************************************99999999**********************************************************************************99885.566788*************************************************************************5..79999999999998744446689*************************************************************************************************98761556788999********************9666666..69****************************************************************9998743322 PP

>> TIGR02788  VirB11: P-type DNA transfer ATPase VirB11
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0   5.1e-06    0.0026     134     165 ..      59      90 ..      41     101 .. 0.85

  Alignments for each domain:
  == domain 1    score: 14.7 bits;  conditional E-value: 5.1e-06
   TIGR02788 134 keFlklaiaakkniiisGgtgsgKTTflkalv 165
                 k+ l  a+++++ ++++G tgsgKTT +   +
  MMETSP1137-20121227|1766_1  59 KQELINAVKENQVLVVIGETGSGKTTQMTQYM 90 
                 566778********************998766 PP

>> TIGR01587  cas3_core: CRISPR-associated helicase Cas3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.0     0.034        18       2      55 ..      72     124 ..      71     153 .. 0.70
   2 !    8.6   0.0   0.00037      0.19     124     295 ..     166     335 ..     139     342 .. 0.66
   3 ?   -3.4   0.0       1.7   8.7e+02     310     338 ..     371     394 ..     358     409 .. 0.65

  Alignments for each domain:
  == domain 1    score: 2.2 bits;  conditional E-value: 0.034
   TIGR01587   2 lvieAPtGyGKteaallwalklikkqkadkvif..alPtratanamyerlkelfgs 55 
                 lv+   tG+GKt+    + +++       + i+  + P r+ a  + +r+ e fg 
  MMETSP1137-20121227|1766_1  72 LVVIGETGSGKTTQMTQYMAEA---GFTARGIIgcTQPRRVAAMSVSKRVAEEFGC 124
                 678888*******999999985...5555555433789999999999999999984 PP

  == domain 2    score: 8.6 bits;  conditional E-value: 0.00037
   TIGR01587 124 anSvliiDEvhayeeytkalllallevlk.dvdvkillmsAtlp.kllkeylekielveenealdlkeekrfenqrisliekdkleeisslerl.lealkkekkvliivN.tVdrA.qelyqklkekapeeeiiLlHsrftekdrekkEaellkelkknekfvivaTQviEvslDis 295
                  +S++ +DE+h     t  l+ +l  +l+ ++d k++  sAtl  +   +y+ +  +  +  +  + +     +   +++ + +  +   ++ + ++ ++  + vl+++   +d+A q l++++k  ++++  +++   ++    e +  +  +     +  v+vaT ++E+sl i+
  MMETSP1137-20121227|1766_1 166 RYSLIMLDEAHERTIHTDVLFGLLKGLLArRKDLKLICTSATLDaEKYSTYFFECPI--FTIPGRTYP----VEVLYTKTPETDYMDAALITVMqIHLSEPPGDVLLFLTxEIDTAcQILFERMKSLGNNLPELIILPVYSALPSEMQ-TRIFEPAPPGARKVVVATNIAEASLTID 335
                 479********877766666544444555699***********98666666654433..333333333....1223333344444555555555588888888888876526888845679999999999864555555655555555.4555555568888999999999999887 PP

  == domain 3    score: -3.4 bits;  conditional E-value: 1.7
   TIGR01587 310 iQRlGRlaRygrkirenrevyvltelled 338
                  QR+GR  R g   +   + y l+  + +
  MMETSP1137-20121227|1766_1 371 RQRAGRAGRTG--PG---KCYRLYTEQAY 394
                 59****99933..33...45555554444 PP

>> TIGR03499  FlhF: flagellar biosynthesis protein FlhF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   0.0   2.7e-05     0.014     188     213 ..      59      84 ..       3      93 .. 0.80

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 2.7e-05
   TIGR03499 188 kkeedeilekggviaLvGptGvGKTT 213
                 k+e  ++ ++ +v++++G tG+GKTT
  MMETSP1137-20121227|1766_1  59 KQELINAVKENQVLVVIGETGSGKTT 84 
                 556667788888************** PP

>> TIGR03880  KaiC_arch_3: KaiC domain protein, AF_0351 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   6.2e-05     0.032      12      39 ..      65      92 ..      55      98 .. 0.84
   2 ?   -2.1   0.0      0.97     5e+02     160     189 ..     140     169 ..     136     173 .. 0.76

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 6.2e-05
   TIGR03880 12 GliegsvivviGeaGtGkttlslqflye 39
                 + e++v+vviGe+G Gktt   q++ e
  MMETSP1137-20121227|1766_1 65 AVKENQVLVVIGETGSGKTTQMTQYMAE 92
                567899***************9999865 PP

  == domain 2    score: -2.1 bits;  conditional E-value: 0.97
   TIGR03880 160 askyglieylaDgvillkyvrsddlrdvrl 189
                 +s   +i y++Dg++l +   + dl+ + l
  MMETSP1137-20121227|1766_1 140 TSSETVIKYMTDGMLLRECLVDTDLSRYSL 169
                 56667899*****99987777767776665 PP

>> TIGR02782  TrbB_P: P-type conjugative transfer ATPase TrbB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   4.9e-05     0.025     127     158 ..      60      91 ..      54     100 .. 0.85

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 4.9e-05
   TIGR02782 127 dvlreavaarknilvvGGtgsGkttLanalla 158
                 + l++av+ ++ ++v+G tgsGktt +   +a
  MMETSP1137-20121227|1766_1  60 QELINAVKENQVLVVIGETGSGKTTQMTQYMA 91 
                 56899********************8766665 PP

>> TIGR03819  heli_sec_ATPase: helicase/secretion neighborhood ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   9.4e-05     0.048     168     207 ..      59      98 ..      38     103 .. 0.80

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 9.4e-05
   TIGR03819 168 aelleaivaarlallvsGgtGsGkttLLsalLalvaedeR 207
                 ++ l + v++   l+v G tGsGktt ++  +a++  + R
  MMETSP1137-20121227|1766_1  59 KQELINAVKENQVLVVIGETGSGKTTQMTQYMAEAGFTAR 98 
                 55566778999999************99998888766555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (702 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       221  (0.0538762); expected 82.0 (0.02)
Passed bias filter:                      213  (0.0519259); expected 82.0 (0.02)
Passed Vit filter:                        75  (0.0182838); expected 4.1 (0.001)
Passed Fwd filter:                         8  (0.00195027); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.83u 0.20s 00:00:01.03 Elapsed: 00:00:01.02
# Mc/sec: 908.40
//
Query:       MMETSP1137-20121227|1767_1  [L=229]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (229 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       182  (0.0443686); expected 82.0 (0.02)
Passed bias filter:                      119  (0.0290102); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.22s 00:00:00.40 Elapsed: 00:00:00.28
# Mc/sec: 1042.26
//
Query:       MMETSP1137-20121227|1768_1  [L=277]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (277 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        71  (0.0173086); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.21s 00:00:00.39 Elapsed: 00:00:00.56
# Mc/sec: 652.87
//
Query:       MMETSP1137-20121227|1769_1  [L=199]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.5e-08   30.0   0.0    8.3e-08   29.6   0.0    1.2  1  TIGR01983 UbiG: 3-demethylubiquinone-9 3-O-methyltransferase
    1.2e-06   26.0   0.1    1.7e-06   25.5   0.0    1.2  1  TIGR03534 RF_mod_PrmC: protein-(glutamine-N5) methyltransferase, release factor-specific
    2.5e-06   24.9   0.5    4.8e-06   24.0   0.3    1.5  2  TIGR02021 BchM-ChlM: magnesium protoporphyrin O-methyltransferase
      2e-05   22.0   0.0    2.4e-05   21.7   0.0    1.2  1  TIGR00406 prmA: ribosomal protein L11 methyltransferase
    2.6e-05   21.9   0.0    4.7e-05   21.0   0.0    1.4  1  TIGR00537 hemK_rel_arch: putative methylase
    0.00018   19.6   0.0    0.00031   18.9   0.0    1.3  1  TIGR02469 CbiT: precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit
    0.00088   17.0   0.0     0.0013   16.4   0.0    1.2  1  TIGR02072 BioC: biotin biosynthesis protein BioC
     0.0014   15.8   0.0     0.0021   15.3   0.0    1.2  1  TIGR00477 tehB: tellurite resistance protein TehB
     0.0024   16.2   0.0     0.0036   15.6   0.0    1.3  1  TIGR01444 fkbM_fam: methyltransferase, FkbM family
     0.0027   14.6   0.0     0.0035   14.3   0.0    1.1  1  TIGR00536 hemK_fam: methyltransferase, HemK family
  ------ inclusion threshold ------
      0.019   12.1   0.5        1.6    5.7   0.0    2.1  2  TIGR00698 TIGR00698: conserved hypothetical protein


Domain annotation for each model (and alignments):
>> TIGR01983  UbiG: 3-demethylubiquinone-9 3-O-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.6   0.0   2.2e-10   8.3e-08      41     126 ..      28     116 ..      18     142 .. 0.74

  Alignments for each domain:
  == domain 1    score: 29.6 bits;  conditional E-value: 2.2e-10
   TIGR01983  41 lkknekkleglkvlDvGcGgGllseslarlgaevtgiDlseelievAklhakkdplkkieye....lksveelaeeekesfDvvlamEvl 126
                  kk + +leg+ vl++GcG+Gl s + a lga+v++ D  e++++   ++a+++++  ++ +    ++  ++la e + +  +v+a+++l
  MMETSP1137-20121227|1769_1  28 SKKRSGNLEGMCVLEIGCGSGLCSLTAAMLGAKVIATDPNEQALQLLAASADSHKVS-VDTRpwslHQPFDQLATECAGRETIVIASDIL 116
                 4556689*************************************9988888888886.54431111444555555555555566666555 PP

>> TIGR03534  RF_mod_PrmC: protein-(glutamine-N5) methyltransferase, release factor-specific
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.5   0.0   4.5e-09   1.7e-06      76     151 ..      24      96 ..      17     112 .. 0.82

  Alignments for each domain:
  == domain 1    score: 25.5 bits;  conditional E-value: 4.5e-09
   TIGR03534  76 LveaaleelkkkeklkvlDlgtGsGaIalalakelpdakviavDiseeAlkvarkNakrlglkeveflksdlleal 151
                 Lv    ++  + e + vl++g+GsG    +l + +  akvia+D +e+Al++ ++ a++++++ v++   +l++++
  MMETSP1137-20121227|1769_1  24 LVRLSKKRSGNLEGMCVLEIGCGSGLC--SLTAAMLGAKVIATDPNEQALQLLAASADSHKVS-VDTRPWSLHQPF 96 
                 6666666666666899*********86..5556677**************************9.998888777776 PP

>> TIGR02021  BchM-ChlM: magnesium protoporphyrin O-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.0   0.3   1.3e-08   4.8e-06      47      97 ..      27      79 ..      14     130 .. 0.78
   2 ?   -1.7   0.0      0.91   3.4e+02      68      91 ..      99     124 ..      96     145 .. 0.72

  Alignments for each domain:
  == domain 1    score: 24.0 bits;  conditional E-value: 1.3e-08
   TIGR02021 47 wlpkd..slkGkkvlDAGCGtGllsielAkrGaivkavDiseklvelarkrae 97
                  +k   +l+G+ vl+ GCG+Gl s + A  Ga+v a D  e+ ++l    a+
  MMETSP1137-20121227|1769_1 27 LSKKRsgNLEGMCVLEIGCGSGLCSLTAAMLGAKVIATDPNEQALQLLAASAD 79
                333334579******************************99998886554444 PP

  == domain 2    score: -1.7 bits;  conditional E-value: 0.91
   TIGR02021  68 lsielAkrGaivkavDi..seklvel 91 
                 l+ e A r  iv a+Di  se+l el
  MMETSP1137-20121227|1769_1  99 LATECAGRETIVIASDIlySEELAEL 124
                 67778888889999998556666555 PP

>> TIGR00406  prmA: ribosomal protein L11 methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.7   0.0   6.5e-08   2.4e-05     158     211 ..      35      87 ..      21     142 .. 0.76

  Alignments for each domain:
  == domain 1    score: 21.7 bits;  conditional E-value: 6.5e-08
   TIGR00406 158 lkdkkviDvGcGSGiLsiaalklgaakvvavDiDplavesarkNlelNqvsdll 211
                 l++  v+++GcGSG+ s++a++lga kv+a D + +a++     ++  +vs ++
  MMETSP1137-20121227|1769_1  35 LEGMCVLEIGCGSGLCSLTAAMLGA-KVIATDPNEQALQLLAASADSHKVSVDT 87 
                 566789******************8.6999***999998766666666666544 PP

>> TIGR00537  hemK_rel_arch: putative methylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.0   0.0   1.3e-07   4.7e-05      17      67 ..      34      84 ..      23      95 .. 0.85

  Alignments for each domain:
  == domain 1    score: 21.0 bits;  conditional E-value: 1.3e-07
   TIGR00537 17 elknddvleiGaGtGlvairlkekgkkivatdinPfavkllkenaklnnve 67
                +l++  vleiG G+Gl +  ++  g+k++atd n  a +ll   a   +v 
  MMETSP1137-20121227|1769_1 34 NLEGMCVLEIGCGSGLCSLTAAMLGAKVIATDPNEQALQLLAASADSHKVS 84
                567778*******************************99988777665555 PP

>> TIGR02469  CbiT: precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.0   8.2e-07   0.00031      17      69 ..      35      84 ..      22      90 .. 0.85

  Alignments for each domain:
  == domain 1    score: 18.9 bits;  conditional E-value: 8.2e-07
   TIGR02469 17 lkkgdvllDiGaGtGsvtieaarlvpkgrvyaierneealelieeNlrrfgvs 69
                l+ g+ +l+iG+G+G  ++ aa l  k  v+a + ne+al+l+ + ++ ++vs
  MMETSP1137-20121227|1769_1 35 LE-GMCVLEIGCGSGLCSLTAAMLGAK--VIATDPNEQALQLLAASADSHKVS 84
                44.7889************99988766..99************9999988765 PP

>> TIGR02072  BioC: biotin biosynthesis protein BioC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0   3.5e-06    0.0013      20      78 ..      21      78 ..      18     100 .. 0.74

  Alignments for each domain:
  == domain 1    score: 16.4 bits;  conditional E-value: 3.5e-06
   TIGR02072 20 akkLlellkekr.kfepakvLdiGcGtGiltrallkrfpqaelialDiseemleqakkkl 78
                 ++L++l k++  ++e   vL+iGcG+G+ +   +     a++ia+D  e+ l+ +    
  MMETSP1137-20121227|1769_1 21 SSELVRLSKKRSgNLEGMCVLEIGCGSGLCSLTAAML--GAKVIATDPNEQALQLLAASA 78
                567888888877999999**********776544444..4446****9999998776554 PP

>> TIGR00477  tehB: tellurite resistance protein TehB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   5.6e-06    0.0021      76     125 ..      39      88 ..      32      98 .. 0.89

  Alignments for each domain:
  == domain 1    score: 15.3 bits;  conditional E-value: 5.6e-06
   TIGR00477  76 ktldlGcGqGrnslylslaGydvdavdkneasiasveeikekenldlrta 125
                  +l++GcG G  sl  +++G  v a d ne+++  +   ++  ++++ t+
  MMETSP1137-20121227|1769_1  39 CVLEIGCGSGLCSLTAAMLGAKVIATDPNEQALQLLAASADSHKVSVDTR 88 
                 589******************************99999999888888776 PP

>> TIGR01444  fkbM_fam: methyltransferase, FkbM family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   9.5e-06    0.0036       2      52 ..      40      87 ..      39     102 .. 0.88

  Alignments for each domain:
  == domain 1    score: 15.6 bits;  conditional E-value: 9.5e-06
   TIGR01444  2 viDiGAniGdvslvfaravaegrviafEPlpdllekleenvklnnlknvkl 52
                v+ iG+  G  sl +a ++a+  via +P+ ++l+ l + +  ++++ v++
  MMETSP1137-20121227|1769_1 40 VLEIGCGSGLCSLTAAMLGAK--VIATDPNEQALQLLAASADSHKVS-VDT 87
                899****************98..**************9998888875.655 PP

>> TIGR00536  hemK_fam: methyltransferase, HemK family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.0   9.5e-06    0.0035     118     164 ..      40      84 ..      23     103 .. 0.87

  Alignments for each domain:
  == domain 1    score: 14.3 bits;  conditional E-value: 9.5e-06
   TIGR00536 118 ilDlgtGsGcIalalAleipnaeviavDistdalavaeeNaeklkle 164
                 +l++g+GsG  +l+ A+  +  +via D  ++al++  + a  +k++
  MMETSP1137-20121227|1769_1  40 VLEIGCGSGLCSLTAAMLGA--KVIATDPNEQALQLLAASADSHKVS 84 
                 89*********999887766..***************9999999987 PP

>> TIGR00698  TIGR00698: conserved hypothetical protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   0.1    0.0075       2.8     117     146 ..      36      65 ..      21      76 .. 0.77
   2 ?    5.7   0.0    0.0044       1.6      83     115 ..     131     163 ..     114     181 .. 0.87

  Alignments for each domain:
  == domain 1    score: 4.9 bits;  conditional E-value: 0.0075
   TIGR00698 117 dkqlsillgaGssiCGaaavlaiePvvkae 146
                 +   ++ +g+Gs++C  +a +    v+ ++
  MMETSP1137-20121227|1769_1  36 EGMCVLEIGCGSGLCSLTAAMLGAKVIATD 65 
                 55566779*********9999888887655 PP

  == domain 2    score: 5.7 bits;  conditional E-value: 0.0044
   TIGR00698  83 diadvglseivadvliltstflltvllgskvlk 115
                 +   +g ++ivad + l s ++ t+ll +++l 
  MMETSP1137-20121227|1769_1 131 EACSFGAKAIVADSIGLYSPLFCTTLLKIRTLS 163
                 5567999*********************99885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (199 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       148  (0.03608); expected 82.0 (0.02)
Passed bias filter:                      136  (0.0331546); expected 82.0 (0.02)
Passed Vit filter:                        25  (0.00609459); expected 4.1 (0.001)
Passed Fwd filter:                        11  (0.00268162); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.22u 0.21s 00:00:00.43 Elapsed: 00:00:00.47
# Mc/sec: 558.85
//
Query:       MMETSP1137-20121227|1770_1  [L=340]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.3e-14   52.3   4.5    1.1e-07   29.7   0.1    2.3  2  TIGR03553 F420_FbiB_CTERM: F420 biosynthesis protein FbiB, C-terminal domain
    1.1e-12   45.6   1.8    5.3e-09   33.6   1.2    2.2  1  TIGR02476 BluB: cob(II)yrinic acid a,c-diamide reductase


Domain annotation for each model (and alignments):
>> TIGR03553  F420_FbiB_CTERM: F420 biosynthesis protein FbiB, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.0   0.6     3e-09   6.1e-06       2      57 ..     163     218 ..     162     229 .. 0.83
   2 !   29.7   0.1   5.3e-11   1.1e-07      98     186 ..     234     326 ..     225     331 .. 0.82

  Alignments for each domain:
  == domain 1    score: 24.0 bits;  conditional E-value: 3e-09
   TIGR03553   2 avllrrsvref.sadpvdpdavraavaealtapaphhtrpvrfvlvedaeerarlld 57 
                 a+ +rrsv ++ ++  v++d++r+a+ +a+ ap    t p+rf  v  +++ra+l++
  MMETSP1137-20121227|1770_1 163 ALRMRRSVVKYdTTRAVPEDVLRRALEAAVLAPNHFLTEPWRFY-VAGEATRAALVA 218
                 7889***9998456789**************************5.667888888765 PP

  == domain 2    score: 29.7 bits;  conditional E-value: 5.3e-11
   TIGR03553  98 lvldGahsypderraaaee..tmftvavGaavqallvalaveglGscwvgsti.faadvvreeldlpadwep.lGavavGypaeplkprdprd 186
                 l++  ahs pd++  +  +  +    a+  avq+l+++l++eg+Gs w++ ++  a++ v e++   a+ e  +Ga+  Gypa+pl+p +p++
  MMETSP1137-20121227|1770_1 234 LIVTMAHSDPDAQSYQCSTkgREDYAATACAVQNLMLSLSAEGVGSKWMTGALgVAPERVLEVVGADAQKEIfVGAIWYGYPAQPLSPVNPAP 326
                 667789999998876554411455689999*******************99885789*******9999888538***********99988765 PP

>> TIGR02476  BluB: cob(II)yrinic acid a,c-diamide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.6   1.2   2.6e-12   5.3e-09      10     151 ..     161     282 ..     154     316 .. 0.86

  Alignments for each domain:
  == domain 1    score: 33.6 bits;  conditional E-value: 2.6e-12
   TIGR02476  10 yrllkeRRDvRrfr.sdPvdeevlerlleaahlAPsvGlsqPWrivrveeeakreavlalfeeaneaaaklyegerakqykrLklegireapvqlavflddaraekhglGrktmpemleysvalaiqnlwlaaRaeGlGvGwv 151
                 +++l++RR v ++  +  v+e+vl+r leaa lAP   l++PWr+  v  ea+r+a++a+      +        +++ ++          p  l+v+++++ +++++   +t+ + + +++a+a+qnl l + aeG+G  w+
  MMETSP1137-20121227|1770_1 161 ADALRMRRSVVKYDtTRAVPEDVLRRALEAAVLAPNHFLTEPWRFY-VAGEATRAALVAMN----PK--------KHEMFS--------AVPGWLIVTMAHSDPDAQSYQCSTKGREDYAATACAVQNLMLSLSAEGVGSKWM 282
                 6799*****98887699***************************96.67778888776543....33........344443........36999*********************************************9996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (340 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        68  (0.0165773); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.30u 0.15s 00:00:00.44 Elapsed: 00:00:00.37
# Mc/sec: 1212.87
//
Query:       MMETSP1137-20121227|1771_1  [L=160]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.014   12.3   2.0      0.018   12.0   1.4    1.1  1  TIGR01554 major_cap_HK97: phage major capsid protein, HK97 family


Domain annotation for each model (and alignments):
>> TIGR01554  major_cap_HK97: phage major capsid protein, HK97 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   1.4   4.4e-06     0.018      11      69 ..      80     138 ..      73     156 .. 0.75

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 4.4e-06
   TIGR01554  11 lakelkkltedekeeeaeeekkekdalkaeidkleaeierleea.....aaeeeakeaasgeag 69 
                 +a+ ++k++++++++e++e ++e ++l++e+++++a++++ +++     +     ++ ++  ++
  MMETSP1137-20121227|1771_1  80 KASCAQKHADSNELSETDEMRAENAELRQELREVKAKLAEVQALrlgelM-----ERGERDHQR 138
                 45556699999*********************************654431.....333333332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (160 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       221  (0.0538762); expected 82.0 (0.02)
Passed bias filter:                      156  (0.0380302); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.18u 0.16s 00:00:00.34 Elapsed: 00:00:00.32
# Mc/sec: 659.95
//
Query:       MMETSP1137-20121227|1772_1  [L=369]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.5e-12   45.1   0.0    2.3e-12   44.5   0.0    1.2  1  TIGR00091 TIGR00091: tRNA (guanine-N(7)-)-methyltransferase


Domain annotation for each model (and alignments):
>> TIGR00091  TIGR00091: tRNA (guanine-N(7)-)-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.5   0.0   5.5e-16   2.3e-12      16     156 ..     130     274 ..     115     305 .. 0.82

  Alignments for each domain:
  == domain 1    score: 44.5 bits;  conditional E-value: 5.5e-16
   TIGR00091  16 kkplvleiGcGkGrfliklAkq.npeknflGiEiekpivlkainkaeklglkNlkvlcgdakkllekfipkgslskvflnFpdPwfkk....rhekrRivqpkflkevaevLkkgGvielktDveklfedmlkvlsendlfeeisk 156
                 + p+ le+  G G  + ++A +   + n +  Ei++  v +   ++    + Nl v+ gda+ ll+  ++ +s+s++f+nFp+P ++       + r +++ +f   ++++L + G i + +D++ + +    ++ +    e++ +
  MMETSP1137-20121227|1772_1 130 SLPIKLEVASGTGDWVAAQALAdVGNANWIAAEIRHDRVCAIFSRMVMRAVPNLCVVGGDATDLLRSHVKPQSISHIFVNFPEPPHRSgdedASNERALLTDEFFRLAHKALTHAGRITIFSDNRRYCQSLARSIGSLR-KERLDH 274
                 56999************9996516899**************************************9998888***********988651111668999*****************************998766665554.344444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (369 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       103  (0.0251097); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.28u 0.18s 00:00:00.46 Elapsed: 00:00:00.55
# Mc/sec: 885.53
//
Query:       MMETSP1137-20121227|1774_1  [L=650]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (650 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       136  (0.0331546); expected 82.0 (0.02)
Passed bias filter:                      117  (0.0285227); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.17s 00:00:00.63 Elapsed: 00:00:00.46
# Mc/sec: 1865.06
//
Query:       MMETSP1137-20121227|1775_1  [L=906]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (906 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        67  (0.0163335); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.52u 0.15s 00:00:00.67 Elapsed: 00:00:00.57
# Mc/sec: 2061.76
//
Query:       MMETSP1137-20121227|1776_1  [L=115]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (115 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        95  (0.0231594); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.15s 00:00:00.30 Elapsed: 00:00:00.30
# Mc/sec: 505.96
//
Query:       MMETSP1137-20121227|1777_1  [L=646]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (646 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        75  (0.0182838); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.16s 00:00:00.56 Elapsed: 00:00:00.36
# Mc/sec: 2368.47
//
Query:       MMETSP1137-20121227|1778_1  [L=1040]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   1.7e-142  474.3   5.2    7.4e-63  210.4   1.6    3.1  3  TIGR00957 MRP_assoc_pro: multi drug resistance-associated protein (MRP)
    4.5e-82  274.1   6.9    2.4e-30  102.6   4.4    4.0  3  TIGR01271 CFTR_protein: cystic fibrosis transmembrane conductor regulator (CFTR)
    2.4e-57  192.5  10.2    1.1e-36  124.2   1.5    3.8  4  TIGR03375 type_I_sec_LssB: type I secretion system ATPase
    4.4e-52  175.1  11.7    7.1e-34  114.9   0.1    4.0  4  TIGR00958 3a01208: antigen peptide transporter 2
    2.7e-50  169.7  26.0    4.4e-32  109.5   1.3    4.1  4  TIGR02857 CydD: thiol reductant ABC exporter, CydD subunit
    5.6e-50  168.2  21.9    3.9e-37  125.8   3.5    4.1  4  TIGR02203 MsbA_lipidA: lipid A export permease/ATP-binding protein MsbA
    3.2e-47  159.3  19.8    3.7e-33  112.8   2.5    4.1  4  TIGR02204 MsbA_rel: ABC transporter, permease/ATP-binding protein
    1.6e-46  156.7  17.5    5.7e-34  115.2   1.9    4.1  4  TIGR03796 NHLM_micro_ABC1: NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein
    7.1e-46  154.8  27.1    2.5e-31  106.7   4.3    4.1  4  TIGR03797 NHLM_micro_ABC2: NHLM bacteriocin system ABC transporter, ATP-binding protein
    7.4e-46  154.5  16.7    7.7e-36  121.4   0.8    4.0  4  TIGR01846 type_I_sec_HlyB: type I secretion system ATPase
    1.7e-44  150.3   2.9      1e-26   91.5   0.0    4.1  4  TIGR01193 bacteriocin_ABC: ABC-type bacteriocin transporter
    1.7e-43  146.9  32.8    6.6e-28   95.4   4.5    4.4  4  TIGR02868 CydC: thiol reductant ABC exporter, CydC subunit
    2.5e-42  142.9   7.2    3.8e-23   79.6   1.4    3.3  3  TIGR01842 type_I_sec_PrtD: type I secretion system ATPase
    3.7e-35  119.4  16.6    2.6e-32  110.0   2.7    3.4  3  TIGR01192 chvA: glucan exporter ATP-binding protein
    1.2e-34  117.9   6.0    1.6e-16   58.4   0.2    3.2  3  TIGR02142 modC_ABC: molybdate ABC transporter, ATP-binding protein
    1.6e-32  110.6   0.7    5.7e-14   49.9   0.0    3.2  3  TIGR00972 3a0107s01c2: phosphate ABC transporter, ATP-binding protein
    2.4e-31  106.8   1.4    2.2e-11   41.5   0.0    3.8  3  TIGR03410 urea_trans_UrtE: urea ABC transporter, ATP-binding protein UrtE
    4.1e-31  106.2   0.8    6.5e-17   59.5   0.0    3.1  3  TIGR01186 proV: glycine betaine/L-proline transport ATP binding subunit
    4.9e-31  105.8  11.0    2.5e-18   64.2   1.4    3.2  3  TIGR03864 PQQ_ABC_ATP: ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system
    2.6e-29  100.1  17.6    2.3e-11   41.2   3.6    3.4  3  TIGR03873 F420-0_ABC_ATP: proposed F420-0 ABC transporter, ATP-binding protein
    3.6e-29   99.8   6.2    1.9e-12   45.1   0.3    3.2  3  TIGR02673 FtsE: cell division ATP-binding protein FtsE
    1.1e-28   98.2   3.3    1.6e-12   45.2   0.3    3.4  3  TIGR01188 drrA: daunorubicin resistance ABC transporter, ATP-binding protein
    1.4e-28   97.9   5.9      9e-12   42.8   0.1    3.3  3  TIGR00968 3a0106s01: sulfate ABC transporter, ATP-binding protein
    2.8e-27   93.5   7.9    1.1e-09   35.9   0.1    4.1  3  TIGR02315 ABC_phnC: phosphonate ABC transporter, ATP-binding protein
    1.2e-25   88.4   5.9    2.5e-12   44.5   0.2    3.1  3  TIGR03265 PhnT2: putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein
    2.6e-25   87.1   2.5    2.1e-11   41.7   0.1    3.3  3  TIGR01277 thiQ: thiamine ABC transporter, ATP-binding protein
    6.3e-25   86.0   8.5    1.5e-09   35.8   0.5    3.2  3  TIGR00960 3a0501s02: type II secretory pathway family protein
    1.2e-24   85.1   5.5    1.5e-09   35.5   0.1    3.3  3  TIGR02769 nickel_nikE: nickel import ATP-binding protein NikE
    8.4e-23   78.7   3.1    4.3e-10   36.9   0.3    3.3  3  TIGR02314 ABC_MetN: D-methionine ABC transporter, ATP-binding protein
    4.2e-22   76.2   2.0    1.3e-09   35.0   0.1    3.1  3  TIGR03269 met_CoM_red_A2: methyl coenzyme M reductase system, component A2
    1.1e-21   75.0   6.5    3.8e-10   37.2   0.1    3.1  3  TIGR01187 potA: polyamine ABC transporter, ATP-binding protein
    1.6e-21   74.6   6.7    3.4e-10   37.5   0.3    3.4  3  TIGR02770 nickel_nikD: nickel import ATP-binding protein NikD
    1.6e-21   74.6  10.4    2.2e-11   41.2   0.4    3.2  3  TIGR03258 PhnT: 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT
    1.8e-21   74.4   5.0    8.9e-11   39.3   0.1    3.9  3  TIGR03005 ectoine_ehuA: ectoine/hydroxyectoine ABC transporter, ATP-binding protein EhuA
    1.9e-21   74.2   6.6      3e-10   37.7   0.4    3.3  3  TIGR01166 cbiO: cobalt ABC transporter, ATP-binding protein
    4.6e-21   73.2   7.9    1.1e-08   32.8   0.9    3.2  3  TIGR02982 heterocyst_DevA: ABC exporter ATP-binding subunit, DevA family
    9.9e-21   72.3   2.6    1.5e-06   25.9   0.1    3.2  3  TIGR03411 urea_trans_UrtD: urea ABC transporter, ATP-binding protein UrtD
    1.8e-20   71.4  13.4    6.7e-09   33.6   0.3    4.1  3  TIGR03771 anch_rpt_ABC: anchored repeat-type ABC transporter, ATP-binding subunit
    4.6e-20   69.7   6.9    8.2e-11   39.3   0.0    3.5  3  TIGR03415 ABC_choXWV_ATP: choline ABC transporter, ATP-binding protein
    9.2e-20   68.8   0.2    1.6e-09   35.4   0.0    3.2  3  TIGR03608 L_ocin_972_ABC: putative bacteriocin export ABC transporter, lactococcin 972 group
    1.7e-19   68.0   5.7    2.2e-07   28.4   0.4    3.5  3  TIGR02211 LolD_lipo_ex: lipoprotein releasing system, ATP-binding protein
    3.1e-19   67.4   0.2    1.7e-07   29.0   0.0    3.2  3  TIGR03740 galliderm_ABC: lantibiotic protection ABC transporter, ATP-binding subunit
    1.2e-18   65.4   6.2    8.6e-08   29.9   0.3    3.2  3  TIGR01184 ntrCD: nitrate ABC transporter, ATP-binding proteins C and D
    2.4e-18   64.4   5.4    1.5e-08   32.4   0.1    3.3  3  TIGR01189 ccmA: heme ABC exporter, ATP-binding protein CcmA
    3.7e-17   60.1   6.5    1.3e-07   28.8   0.7    3.2  3  TIGR01288 nodI: nodulation ABC transporter NodI
    6.4e-15   53.2   0.4    7.4e-06   23.5   0.1    3.6  3  TIGR03522 GldA_ABC_ATP: gliding motility-associated ABC transporter ATP-binding subunit GldA
    1.3e-13   48.8   1.6     0.0011   16.2   0.0    3.5  3  TIGR01978 sufC: FeS assembly ATPase SufC
    2.4e-13   47.9   1.9    0.00044   17.6   0.0    4.2  4  TIGR02324 CP_lyasePhnL: phosphonate C-P lyase system protein PhnL
      5e-13   44.6   1.9    1.9e-08   29.4   0.4    2.1  2  TIGR01257 rim_protein: rim ABC transporter
    2.8e-12   43.7   0.1    0.00013   18.3   0.0    3.4  3  TIGR00954 3a01203: peroxysomal long chain fatty acyl transporter
    6.9e-12   42.5   0.7    0.00059   16.3   0.0    3.2  3  TIGR03719 ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family
    7.8e-12   42.2   0.2    0.00023   17.5   0.0    3.2  3  TIGR02633 xylG: D-xylose ABC transporter, ATP-binding protein
      1e-10   38.7  12.5    5.5e-06   23.1   0.0    3.9  3  TIGR00955 3a01204: pigment precursor permease
    2.5e-09   34.8   6.8    0.00063   17.1   0.4    3.5  3  TIGR02323 CP_lyasePhnK: phosphonate C-P lyase system protein PhnK
    1.6e-08   31.4   9.3    3.7e-06   23.6   0.0    3.7  4  TIGR01194 cyc_pep_trnsptr: cyclic peptide transporter
    2.5e-05   19.9   2.0      0.086    8.2   0.1    3.1  3  TIGR00956 3a01205: pleiotropic drug resistance family protein
    4.8e-05   19.5   0.2     0.0024   13.9   0.0    2.4  2  TIGR00630 uvra: excinuclease ABC subunit A
     0.0035   14.7   0.0       0.74    7.1   0.0    2.3  2  TIGR00157 TIGR00157: ribosome small subunit-dependent GTPase A
  ------ inclusion threshold ------
      0.054    9.5   0.0      0.094    8.7   0.0    1.2  1  TIGR00929 VirB4_CagE: type IV secretion/conjugal transfer ATPase, VirB4 family


Domain annotation for each model (and alignments):
>> TIGR00957  MRP_assoc_pro: multi drug resistance-associated protein (MRP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.5   0.0   1.7e-19   1.2e-17     652     735 ..      96     182 ..      83     187 .. 0.92
   2 !  202.8   0.1   2.1e-62   1.5e-60     765    1266 ..     188     704 ..     184     710 .. 0.79
   3 !  210.4   1.6   1.1e-64   7.4e-63    1319    1521 ..     713     915 ..     707     916 .. 0.95

  Alignments for each domain:
  == domain 1    score: 60.5 bits;  conditional E-value: 1.7e-19
   TIGR00957 652 ptlngltlsipegalvavvgqvgcgkssllsallaemdkvegkvalk...gsvayvpqqawiqndslrenilfgkaleekyykavle 735
                  +l+++++++p+g l  v+g+vg gkssll  ll+em    g++a+    g v yvpq aw+ n++lren+++ ++++ + y+ v+e
  MMETSP1137-20121227|1778_1  96 FALRNINMRMPRGKLTFVLGEVGSGKSSLLQLLLGEMRANRGHMAVDrgaGPVGYVPQGAWVLNATLRENVVLSRPFDAEWYNRVVE 182
                 57999***************************************99544488*******************************9997 PP

  == domain 2    score: 202.8 bits;  conditional E-value: 2.1e-62
   TIGR00957  765 qkqrvslaravysdadiyllddplsavdahvakhifekvigpkgl.lknktrilvthgisylpqvdv.iivlsdgkisemgsyqelldrdgaf..aef....lrtyasaedeldaeddg.vasvsaedkeaklvedgllvtdvvg..kqlqrqlsasssdsedtsrhlsssa.elqkaeak.eetwklmeadkaqigq.....vklsvywd.....yakaiglf.itllsillflcnsvsalasnywlslwtddavvdgtqentklrlsvyaalgilqgiavlgysmavsiggilasrvlhldllhnvlrspmsffertpsgnlvnrfskeldvvdsvlaevikmllgslfnvigavivillatplaaviilplallyflvqrfyvassrqlkrlesvsrspvyshfnetllgvsvirafeeqerfiiqsdlkvdenqkayypsivanrwlavrlelvgncivlfaalfavisrsslsaglvglsvsyslqvtaylnwlvrmsseletnivaverlkeysetekea 1266
                  qk r+s+ara+y +  ++llddplsavdahv++h+ +  i    l     t +lv+h + +  +    ++++  g++   g  +el +  g++  a+      ++ a++e   ++ d+  +++v+  ++ +++  ++   t+  g    ++    a   ++++ + h +s++ +l  + +   e +k + +  a+ gq     + ls         y +++g + ++ll  ++f      al +++ l  w  +    gt +   l    y+ l +  g+  l+ + + +   i as ++h  +l +vl +p++ff++tp g ++  fsk+ d++d++++  +  ll+    v +a++v  +a p+a  +++ ++  ++ +   +   + ql rl+  +  p++s ++etl g   ira   q++f      ++  n +a +    +nrwlavrl+l+   +vl  a+ a++ r+ l++ l  l++ y lq+t +++w  r+ se  t  v+ver   ys+ e+e 
  MMETSP1137-20121227|1778_1  188 QKARISMARALYGKPSLFLLDDPLSAVDAHVSRHLVDFAISGLMLtTLRATVVLVSHQLQFTHELAAsVVLMEAGRVVAQGDANELAS-MGSLphADKpdddAQDAAQNEVRDKVPDEAqATLVAEGGNASQKTSETQDATNEEGaePGFKAGHQAQGGTGGGRAPHNDSADgKLVATSSTtAERGKSVFESAASKGQpsareMGLSNAKGearrfYGRSMGYVwLALLLGFIFGLACSRAL-ADFMLGRWISE----GTSDADAL---TYTVLIVATGVFGLLQACTFAQRTIAASTRIHSTVLSAVLHAPKAFFDTTPLGIVLAVFSKDQDTLDDLFPITLVSLLKCATLVSTALVVSAIAVPVALAVLPVVGYFFYRLTATFNKPAAQLMRLDKATTGPIFSFYSETLAGLPSIRALGLQHEFDTSLIERLATNHRAHFFWASCNRWLAVRLDLLTAVVVLTVAVCALLLREELDTTLSALALVYILQITSMFQWGFRVYSECRTLFVSVERALTYSRIEQEP 704 
                  9************************************9886554414567999********998765166678899999999988755.455411443111133334444433444444145555555666777777777766550056777778888888888877777652554444444677887777777777633222345543322222266677754144555555544444444.57888888655....55555555...4777888899999999999999**********************************************************99999*****************9999988888888889999*************************************************************************************************************************************995 PP

  == domain 3    score: 210.4 bits;  conditional E-value: 1.1e-64
   TIGR00957 1319 grtgagkssltlglfrinesaegeiiidglniakiglhdlrfkltiipqdpvlfsgslrmnldpfsqysdeevwlalelahlkdfvsalpdkldfecaeggenlsvgqrqlvclarallrktkilvldeataavdletdnliqstirtqfedctvltiahrlntimdytrvlvldkgevaefdapsellqqrg.ifysmakdag 1521
                  grtgagkssl+++lfr+ e a g i idg++i+ +gl  lr  +tii qd +lf+g++r nldp++++sde +  al    +        + ld + aegg nls g rql+ +a allr+++i++ldeata++d+ td  iq  +r  f+  t+ltiahrl+t++dy  v+v+ +g+ ae++ap++ll++ g +f ++ +d+g
  MMETSP1137-20121227|1778_1  713 GRTGAGKSSLSVALFRLVELAAGSITIDGVDISSLGLAMLRRAMTIIQQDAMLFAGTIRSNLDPIGTHSDEALDAALRTVDFVRHA-GGEATLDTNVAEGGANLSAGTRQLLGVAGALLRHSRIVMLDEATASIDFTTDATIQRVVRKSFDAATILTIAHRLDTVIDYDDVIVMSHGVAAECGAPAQLLRNEGsLFSALVRDTG 915 
                  9***************************************************************************9877655544.34689**************************************************************************************************99846777899988 PP

>> TIGR01271  CFTR_protein: cystic fibrosis transmembrane conductor regulator (CFTR)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.5   0.0     3e-18   2.1e-16     441     674 ..      97     313 ..      84     343 .. 0.80
   2 !  102.6   4.4   3.5e-32   2.4e-30     941    1187 ..     459     706 ..     441     712 .. 0.90
   3 !  102.4   0.0   4.1e-32   2.9e-30    1252    1452 ..     713     914 ..     709     955 .. 0.83

  Alignments for each domain:
  == domain 1    score: 56.5 bits;  conditional E-value: 3e-18
   TIGR01271 441 vlknislklekgqllavagstgsgkssllmmilgelepsegki...khsgrisfspqvswimpgtikdniifglsydeyrytsvikacqleediallaekdktvlgeggitlsggqrarislaravykdadlylldspfsyldvvtekeifesclckllank...trilvtsklehlkk.adkilllhegscyfygtfselqakkpdfsskllgleafdslsaerrnsiltetlrrvsves 674
                  l+ni++++ +g+l  v g  gsgkssll ++lge+    g++   + +g + + pq +w++  t+++n+++   +d   y+ v+     e d+                     q+aris+ara+y    l+lld p+s +d    +++ +  +  l+ +    t +lv+ +l+  +  a  ++l+  g     g   el +      +     +a d  + e r+ +  e+   +  e+
  MMETSP1137-20121227|1778_1  97 ALRNINMRMPRGKLTFVLGEVGSGKSSLLQLLLGEMRANRGHMavdRGAGPVGYVPQGAWVLNATLRENVVLSRPFDAEWYNRVV-----ERDLV-------------------XQKARISMARALYGKPSLFLLDDPLSAVDAHVSRHLVDFAISGLMLTTlraTVVLVSHQLQFTHElAASVVLMEAGRVVAQGDANELASMGSLPHADKPDDDAQDAAQNEVRDKVPDEAQATLVAEG 313
                 599**************************************98555679*****************************99*9997.....45553...................49******************************************98761125578888888765437888899999999999999987665544444555555555555555555555555555555 PP

  == domain 2    score: 102.6 bits;  conditional E-value: 3.5e-32
   TIGR01271  941 lgflrglplvhtlltvskrlhkkmlhsvlqapmavlntlkagrilnrfskdiaiiddllpltlfdliqlllivlgaiavvsvlqpyilvaaipvavi.fivlrayflrtsqqlkqlesearspifshliislkglwtvrafgrqsyfetlfhkalnlhtanwflylstlrwfqlridiifvlffiavvfiaiatndegegevg.iiltlamnilstlqwavnssidvdglmrsvsrvfkfidlpqeesk 1187
                  +g+l+   +    ++ s r+h  +l +vl+ap a ++t   g +l  fskd  ++ddl+p+tl  l++   +v  a++v ++  p + +a +pv+   f  l a f + + ql +l+  +  pifs    +l gl ++ra+g q  f+t +   l +     f++ s  rw+ +r+d++  +   +v+  a++ ++e +  +  + l   ++i+s +qw      +  +l+ sv+r + +  + qe ++
  MMETSP1137-20121227|1778_1  459 FGLLQACTFAQRTIAASTRIHSTVLSAVLHAPKAFFDTTPLGIVLAVFSKDQDTLDDLFPITLVSLLKCATLVSTALVVSAIAVP-VALAVLPVVGYfFYRLTATFNKPAAQLMRLDKATTGPIFSFYSETLAGLPSIRALGLQHEFDTSLIERLATNHRAHFFWASCNRWLAVRLDLLTAVVVLTVAVCALLLREELDTTLSaLALVYILQITSMFQWGFRVYSECRTLFVSVERALTYSRIEQEPAH 706 
                  566777788888999**********************************************************999999888888.56799999876156799**********************************************9999999988888999***************9999999999*99999999888625688899*****************************999999654 PP

  == domain 3    score: 102.4 bits;  conditional E-value: 4.1e-32
   TIGR01271 1252 grtgsgkstllsallrlls.tegeiqidgvswnsvtlqkwrkafgvipqkvfilsgtfrknldpyeqysdeeiwkvaeevglksvieqfpdkldfvlvdggyvlsnghkqlmclarsilskakillldepsafldpvtlqiirktlkqafsnctvilsehrveallecqqflviegssvkqyds.iqkllneasllkqalsaa 1452
                  grtg+gks+l  al+rl++ + g i+idgv   s+ l   r+a+ +i q  ++++gt+r nldp   +sde +      v +          ld  + +gg  ls g +ql+ +a ++l +++i++lde +a +d  t   i++ ++++f   t++   hr++++++ ++ +v+      +  +  q l ne sl+   +  +
  MMETSP1137-20121227|1778_1  713 GRTGAGKSSLSVALFRLVElAAGSITIDGVDISSLGLAMLRRAMTIIQQDAMLFAGTIRSNLDPIGTHSDEALDAALRTVDFVRHA-GGEATLDTNVAEGGANLSAGTRQLLGVAGALLRHSRIVMLDEATASIDFTTDATIQRVVRKSFDAATILTIAHRLDTVIDYDDVIVMSHGVAAECGApAQLLRNEGSLFSALVRDT 914 
                  9****************98468**************************************************99888888765443.34568******************************************************************************999987777777662566668999998776543 PP

>> TIGR03375  type_I_sec_LssB: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.7   0.0   1.6e-10   1.1e-08     481     567 ..      96     172 ..      92     183 .. 0.91
   2 !   39.4   0.1   7.1e-13   4.9e-11     608     688 ..     188     273 ..     185     278 .. 0.86
   3 ?   -1.8   0.1       2.2   1.5e+02     312     368 ..     568     620 ..     508     662 .. 0.46
   4 !  124.2   1.5   1.6e-38   1.1e-36     500     689 ..     713     900 ..     711     905 .. 0.93

  Alignments for each domain:
  == domain 1    score: 31.7 bits;  conditional E-value: 1.6e-10
   TIGR03375 481 aaLknvslkikpGekvaiiGriGsGKstllklllglyepteGsvlldgvdirqidpadlrrnigyvpqdvtLfyGtlrdNialgapa 567
                  aL+n+++++  G    ++G++GsGKs+ll+lllg +++++G++ +d               +gyvpq ++ +++tlr+N++l++p+
  MMETSP1137-20121227|1778_1  96 FALRNINMRMPRGKLTFVLGEVGSGKSSLLQLLLGEMRANRGHMAVDRGA----------GPVGYVPQGAWVLNATLRENVVLSRPF 172
                 599******************************************99654..........579********************9984 PP

  == domain 2    score: 39.4 bits;  conditional E-value: 7.1e-13
   TIGR03375 608 QrqavalaRallkdppillLDEPtsalDnsseeklle....rLkelladkTlvlvtHrtslL.elvdriivldkGrivadGpkdev 688
                 Q+  +++aRal+ +p+++lLD+P sa+D++  ++l++     L  ++   T+vlv+H+ ++  el+  +++++ Gr+va+G+ +e+
  MMETSP1137-20121227|1778_1 188 QKARISMARALYGKPSLFLLDDPLSAVDAHVSRHLVDfaisGLMLTTLRATVVLVSHQLQFThELAASVVLMEAGRVVAQGDANEL 273
                 9999***************************9999763111455556699*********98647*****************98875 PP

  == domain 3    score: -1.8 bits;  conditional E-value: 2.2
   TIGR03375 312 sklaeeslresaqknallveslegletikalnaesrlqkkWeqvvaalakvslklrl 368
                 ++l++   ++     ++  e+l+gl +i+al+ ++++     +++ +   ++ ++++
  MMETSP1137-20121227|1778_1 568 AQLMRLDKATTGPIFSFYSETLAGLPSIRALGLQHEFD----TSLIERLATNHRAHF 620
                 33333333333334444556666666666665433333....222222223333333 PP

  == domain 4    score: 124.2 bits;  conditional E-value: 1.6e-38
   TIGR03375 500 GriGsGKstllklllglyepteGsvlldgvdirqidpadlrrnigyvpqdvtLfyGtlrdNialgapaaedeellraaelaGvtefvkkhpkGldlqigerGesLSgGQrqavalaRallkdppillLDEPtsalDnsseekllerLkelladkTlvlvtHrtslLelvdriivldkGrivadGpkdevl 689
                 Gr+G+GKs+l   l +l+e  +Gs+++dgvdi+ +  a lrr++ +++qd++Lf+Gt+r N+       +de+l +a++++ + + +    + ld+ ++e+G++LS G rq++++a all++ +i++LDE t+++D ++++++ + +++     T++ ++Hr   +   d +iv+++G     G+ +++l
  MMETSP1137-20121227|1778_1 713 GRTGAGKSSLSVALFRLVELAAGSITIDGVDISSLGLAMLRRAMTIIQQDAMLFAGTIRSNLDPIGT-HSDEALDAALRTVDFVRHAGG-EATLDTNVAEGGANLSAGTRQLLGVAGALLRHSRIVMLDEATASIDFTTDATIQRVVRKSFDAATILTIAHRLDTVIDYDDVIVMSHGVAAECGAPAQLL 900
                 9*************************************************************97766.6999******99876666555.468***********************************************************************99999*********877777777766 PP

>> TIGR00958  3a01208: antigen peptide transporter 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.8   0.0    0.0052      0.36     493     541 ..      94     142 ..      91     145 .. 0.89
   2 !   37.7   0.1   2.4e-12   1.7e-10     621     702 ..     187     275 ..     182     280 .. 0.85
   3 !   19.8   1.5   6.2e-07   4.3e-05     207     444 ..     449     684 ..     360     712 .. 0.78
   4 !  114.9   0.1     1e-35   7.1e-34     514     711 .]     713     911 ..     703     911 .. 0.90

  Alignments for each domain:
  == domain 1    score: 6.8 bits;  conditional E-value: 0.0052
   TIGR00958 493 dkpvlkdLtftlepGevvalVGPsGsGKStvaallenlYqPtgGqvllD 541
                 d+  l+++++ +  G+ + + G  GsGKS+   ll    + + G++ +D
  MMETSP1137-20121227|1778_1  94 DVFALRNINMRMPRGKLTFVLGEVGSGKSSLLQLLLGEMRANRGHMAVD 142
                 5667999****************************98888888888887 PP

  == domain 2    score: 37.7 bits;  conditional E-value: 2.4e-12
   TIGR00958 621 GqkqriAiARALvrkPrvLiLDeAtSALDaeveqllqe......sksaksrtvlliahrLs.tvekadkilvlkkgsvvelGthkqLme 702
                  qk ri +ARAL  kP + +LD+  SA+Da+v + l +      + ++   tv+l+ h+L+ t e a  +++++ g+vv +G+ ++L +
  MMETSP1137-20121227|1778_1 187 XQKARISMARALYGKPSLFLLDDPLSAVDAHVSRHLVDfaisglMLTTLRATVVLVSHQLQfTHELAASVVLMEAGRVVAQGDANELAS 275
                 69****************************888777665665544566778*********944567999999***********999965 PP

  == domain 3    score: 19.8 bits;  conditional E-value: 6.2e-07
   TIGR00958 207 ltllslaSsllaglrgGsfeyamarinlriredlfksllrQdigFfdenktGeltSRlssDtstvseslslnvnvllrnlvkllgllif.mlslSprLtlvtllalPlvllaekvfgkvyqklseevqeavakanqvaeEalsglrTVrSFaaEekEasrfkekleeilqlnkkkala.yalylwttellgllilvlvLayGg.qlvlegkvssgnLvsFlLYqlqlgeavreLsevysel 444
                  t+l +a  +++ l+  +f   +   ++ri++ +++++l+   +Ffd+++ G +    s+D  t+ +  + ++  ll+  + + ++l++  + + + L+++ ++   +   ++ +f+k   +l +  + +++       E l+gl+ +r  +  +     f + l e l  n+++ +     + w    l+ll  v+vL++ +  l+l++++++      l+Y lq+++  +    vyse 
  MMETSP1137-20121227|1778_1 449 YTVLIVATGVFGLLQACTFAQRTIAASTRIHSTVLSAVLHAPKAFFDTTPLGIVLAVFSKDQDTLDDLFPITLVSLLKCATLVSTALVVsAIAVPVALAVLPVVGY-FFYRLTATFNKPAAQLMRLDKATTGPIFSFYSETLAGLPSIRALGLQH----EFDTSLIERLATNHRAHFFwASCNRWLAVRLDLLTAVVVLTVAVcALLLREELDTTLSALALVYILQITSMFQWGFRVYSEC 684
                 356667888999999999999999999**************************************99999998888876655444433313444444444444433.233467889999999999999999*******************99864....588888888888888776515667899999999999***9998636888999988877778999999999988888888775 PP

  == domain 4    score: 114.9 bits;  conditional E-value: 1e-35
   TIGR00958 514 GPsGsGKStvaallenlYqPtgGqvllDgkplkeydhkylhrkvalVgqEPvlfsgsvreNiaYGltktedeevtaaakaanahdFisel..ekgydtevgekGsqlsgGqkqriAiARALvrkPrvLiLDeAtSALDaeveqllqe..sksaksrtvlliahrLstvekadkilvlkkgsvvelGthkqLmeked.vykqlv 711
                 G  G GKS+    l +l +  +G++++Dg++++ +    l+r +++++q+ +lf+g++r N+   + +  de + aa +   + dF+ +   e + dt+v e G  ls+G +q + +A AL+r+ r+++LDeAt+ +D  +++++q+   ks+   t+l iahrL tv   d+++v+++g   e G  +qL  +e+ ++++lv
  MMETSP1137-20121227|1778_1 713 GRTGAGKSSLSVALFRLVELAAGSITIDGVDISSLGLAMLRRAMTIIQQDAMLFAGTIRSNLDP-IGTHSDEALDAALR---TVDFVRHAggEATLDTNVAEGGANLSAGTRQLLGVAGALLRHSRIVMLDEATASIDFTTDATIQRvvRKSFDAATILTIAHRLDTVIDYDDVIVMSHGVAAECGAPAQLLRNEGsLFSALV 911
                 668**********************************************************863.33444555555544...4589976533788***************************************************987889999************************************999997888886 PP

>> TIGR02857  CydD: thiol reductant ABC exporter, CydD subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.3   0.0     6e-13   4.2e-11     332     421 ..      93     171 ..      48     183 .. 0.79
   2 !   26.3   0.6   1.1e-08   7.5e-07     463     527 ..     188     256 ..     185     259 .. 0.84
   3 ?    4.8   4.6     0.033       2.3      21     247 ..     423     646 ..     405     664 .. 0.71
   4 !  109.5   1.3   6.4e-34   4.4e-32     355     529 .]     713     885 ..     688     885 .. 0.93

  Alignments for each domain:
  == domain 1    score: 40.3 bits;  conditional E-value: 6e-13
   TIGR02857 332 egrkpalkevsltvepgelvalvGaSGaGKstllklllgfvepteGailvngaelaeldadswrkqiawvpQkPllfegtvaenirlark 421
                  +   al++++++++ g+l+ ++G+ G+GKs+ll+lllg +++++G+++v+               +++vpQ ++++++t++en+ l+r+
  MMETSP1137-20121227|1778_1  93 SDVF-ALRNINMRMPRGKLTFVLGEVGSGKSSLLQLLLGEMRANRGHMAVDRG----------AGPVGYVPQGAWVLNATLRENVVLSRP 171
                 4444.89******************************************9766..........3579********************997 PP

  == domain 2    score: 26.3 bits;  conditional E-value: 1.1e-08
   TIGR02857 463 qrqRlaLArallrdapllllDEPtahLDaeteaevle.alrela...egrtvllvaHrlalaeladkiv 527
                 q+ R+++Aral+ + +l llD P +++Da+   ++++ a+  l+    ++tv+lv+H+l+ ++++   v
  MMETSP1137-20121227|1778_1 188 QKARISMARALYGKPSLFLLDDPLSAVDAHVSRHLVDfAISGLMlttLRATVVLVSHQLQFTHELAASV 256
                 899***************************99888764777777543578*********9988776555 PP

  == domain 3    score: 4.8 bits;  conditional E-value: 0.033
   TIGR02857  21 aqAallar.vvssliaagealaelltalaalalvlllRallawlkeaaaaraaaevksqlrerllekvaalGpavlqkkksgelatlllegvdalddYfarylpqlvlavivplvilaavltadwisalillltlPlipiFmi.LiG...saaqaaarkqlaalsrLsghfldlvrglptLklfgraka.eaaaikriseeyrerTmevLriAfLSslvLellatlsvAlvAV 247
                 a + +la  ++ ++i++g+  a+ lt   ++  ++++  ++++l+ +  a+ + +++  + +++l++v++   a   +++ g +  +  +  d ldd f   l+ l++++++        l+ + i+  + l +lP++  F   L+    + a++ +r   a++  + ++  + ++glp ++++g +++  ++ i+r + ++r +         L ++ L+ll+++ v  vAV
  MMETSP1137-20121227|1778_1 423 ACSRALADfMLGRWISEGTSDADALTY--TV--LIVATGVFGLLQACTFAQRTIAASTRIHSTVLSAVLHAPKAFFDTTPLGIVLAVFSKDQDTLDDLFPITLVSLLKCATLVS----TALVVSAIAVPVALAVLPVVGYFFYrLTAtfnKPAAQLMRLDKATTGPIFSFYSETLAGLPSIRALGLQHEfDTSLIERLATNHRAHFFWASCNRWL-AVRLDLLTAVVVLTVAV 646
                 445555541344555555555544333..33..3334478999***************************988889999********************999999998876533....334456677777888889998765415541113455666666777778889999*************988735667899999999765544444444.45566666666555555 PP

  == domain 4    score: 109.5 bits;  conditional E-value: 6.4e-34
   TIGR02857 355 GaSGaGKstllklllgfvepteGailvngaelaeldadswrkqiawvpQkPllfegtvaenirlarkdaseaevkealeragldelvkalpqgleteiGergagLSgGqrqRlaLArallrdapllllDEPtahLDaeteaevlealrelaegrtvllvaHrlalaeladkivvl 529
                 G  GaGKs+l  +l ++ve + G+i ++g+++++l  + +r+ ++ ++Q ++lf+gt++ n+     +  ++++++al+ +++ +  +  ++ l+t++ e+ga+LS+G rq l++A allr++++++lDE ta++D +t+a++++ +r+ ++++t+l +aHrl ++ ++d ++v+
  MMETSP1137-20121227|1778_1 713 GRTGAGKSSLSVALFRLVELAAGSITIDGVDISSLGLAMLRRAMTIIQQDAMLFAGTIRSNLDPIGTHS-DEALDAALRTVDFVR-HAGGEATLDTNVAEGGANLSAGTRQLLGVAGALLRHSRIVMLDEATASIDFTTDATIQRVVRKSFDAATILTIAHRLDTVIDYDDVIVM 885
                 789***********************************************************9766655.556**********88.5667789*******************************************************************************987 PP

>> TIGR02203  MsbA_lipidA: lipid A export permease/ATP-binding protein MsbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   2.1e-05    0.0014     345     393 ..      94     142 ..      89     145 .. 0.91
   2 !   31.2   0.2   2.4e-10   1.7e-08     475     556 ..     188     274 ..     186     279 .. 0.86
   3 !    6.4   0.6    0.0081      0.56      62     211 ..     450     599 ..     423     678 .. 0.68
   4 !  125.8   3.5   5.6e-39   3.9e-37     366     561 ..     713     905 ..     693     913 .. 0.92

  Alignments for each domain:
  == domain 1    score: 15.0 bits;  conditional E-value: 2.1e-05
   TIGR02203 345 drealdsislkveaGevvalvGrsGsGkstlvnllpRFyepdsGeillD 393
                 d+ al++i++++  G+ + + G  GsGks+l++ll   +  ++G++ +D
  MMETSP1137-20121227|1778_1  94 DVFALRNINMRMPRGKLTFVLGEVGSGKSSLLQLLLGEMRANRGHMAVD 142
                 6789*******************************99888888888777 PP

  == domain 2    score: 31.2 bits;  conditional E-value: 2.4e-10
   TIGR02203 475 qRqRlaiaRallkdaPiLiLDeatsaLDneseRl.vqaaLerlmkg..Rttlv.iahRLs.tiekaDrivvlddGkiverGtheeLl 556
                 q+ R+++aRal+    + +LD+  sa+D+   R+ v  a+  lm    R t+v ++h L  t e a  +v +++G++v +G  +eL 
  MMETSP1137-20121227|1778_1 188 QKARISMARALYGKPSLFLLDDPLSAVDAHVSRHlVDFAISGLMLTtlRATVVlVSHQLQfTHELAASVVLMEAGRVVAQGDANELA 274
                 899*************************9977763788***999543376665389***758899*****************99985 PP

  == domain 3    score: 6.4 bits;  conditional E-value: 0.0081
   TIGR02203  62 vglvvlrGiasfvsdyllakvsnkvvrdlRkklfeklltlpsayfdkessgsllsrltfdseqvvsaatdvlkvlvretltvigllivllylsWqltlivvvllPvlallvrvvskrlrk....iskeiqnsigeltkvveealqgyrvvklfg 211
                  +l+v  G+   +    +a+ +    + +  ++++ +l++p+a+fd ++ g +l  +  d +   +     + + +   l+  +l+   l +s     + +++lPv+++   +++  + k    + +  + ++g + +  +e+l g   ++  g
  MMETSP1137-20121227|1778_1 450 TVLIVATGVFGLLQACTFAQRTIAASTRIHSTVLSAVLHAPKAFFDTTPLGIVLAVFSKDQDTLDDL----FPITLVSLLKCATLVSTALVVSAIAVPVALAVLPVVGYFFYRLTATFNKpaaqLMRLDKATTGPIFSFYSETLAGLPSIRALG 599
                 578888999999999999998888999999************************9998887665444....43333344444444444444454444456677888888777766666551111444445556666666666666666666655 PP

  == domain 4    score: 125.8 bits;  conditional E-value: 5.6e-39
   TIGR02203 366 GrsGsGkstlvnllpRFyepdsGeillDgvdladlkLasLRrqvalvsqdvvLFddtiaenvaYgeleevdeaeveealaaaylkdlvdkl..peGldtevGengskLsGGqRqRlaiaRallkdaPiLiLDeatsaLDneseRlvqaaLerlmkgRttlviahRLstiekaDrivvlddGkiverGtheeLlarnGl 561
                 Gr G+Gks+l   l R +e  +G+i +Dgvd+  l La LRr ++++ qd +LF +ti  n+      + +++ + +al++    d+v +   +  ldt+v e g++Ls G Rq l +a all+ + i++LDeat+++D   + ++q  + +  +  t l iahRL t+ + D ++v+ +G   e G+  +Ll ++G 
  MMETSP1137-20121227|1778_1 713 GRTGAGKSSLSVALFRLVELAAGSITIDGVDISSLGLAMLRRAMTIIQQDAMLFAGTIRSNLDPIG--THSDEALDAALRT---VDFVRHAggEATLDTNVAEGGANLSAGTRQLLGVAGALLRHSRIVMLDEATASIDFTTDATIQRVVRKSFDAATILTIAHRLDTVIDYDDVIVMSHGVAAECGAPAQLLRNEGS 905
                 9************************************************************97543..4566667777765...678876533689**************************************************************************************************9995 PP

>> TIGR02204  MsbA_rel: ABC transporter, permease/ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.6   0.0   0.00024     0.017     352     400 ..      94     142 ..      89     147 .. 0.93
   2 !   40.4   0.1   4.5e-13   3.1e-11     481     567 ..     188     279 ..     167     282 .. 0.86
   3 ?    2.9   1.3      0.11       7.4      68     221 ..     451     606 ..     403     662 .. 0.64
   4 !  112.8   2.5   5.3e-35   3.7e-33     373     573 ..     713     912 ..     703     913 .. 0.90

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 0.00024
   TIGR02204 352 dqkaldgldltvrpGetvalvGPsGaGkstllelllrfydPqsGailld 400
                 d  al+++++++  G+   + G  G+Gks ll+lll     ++G++ +d
  MMETSP1137-20121227|1778_1  94 DVFALRNINMRMPRGKLTFVLGEVGSGKSSLLQLLLGEMRANRGHMAVD 142
                 7889********************************9999999999887 PP

  == domain 2    score: 40.4 bits;  conditional E-value: 4.5e-13
   TIGR02204 481 qkqriaiarailkdapiLLLdeatsaLdae.seqlvqqaleelmkg..rttlv.iahrLa.tvlkadrivvldkGriveqGthaeLiakggL 567
                 qk ri++ara+  +  ++LLd+  sa+da+ s +lv  a+  lm    r+t+v ++h+L  t   a  +v ++ Gr+v+qG  +eL   g+L
  MMETSP1137-20121227|1778_1 188 QKARISMARALYGKPSLFLLDDPLSAVDAHvSRHLVDFAISGLMLTtlRATVVlVSHQLQfTHELAASVVLMEAGRVVAQGDANELASMGSL 279
                 9****************************758999******999543366655279***746677999*****************9988776 PP

  == domain 3    score: 2.9 bits;  conditional E-value: 0.11
   TIGR02204  68 vlvlalatalrfylvsslGerv..vadlrkavfahllelspaffdknrsgevlsrltadttllksvvGaslsialrnlllliGalamlvitsvkltslvllavPlvllPi.llfgrrvrklsresqdrladasayagealeaiktvqayaseeaers 221
                 vl++a++++  +   +     +  ++ + ++v + +l+  +affd++  g vl+ ++ d   l  +   +l   l+ + l+  al ++ +++v +++ vl +v      +  +f +   +l r  + +   + ++ +e+l+ +  ++a + +++  +
  MMETSP1137-20121227|1778_1 451 VLIVATGVFGLLQACTFAQRTIaaSTRIHSTVLSAVLHAPKAFFDTTPLGIVLAVFSKDQDTLDDLFPITLVSLLKCATLVSTAL-VVSAIAVPVALAVLPVVGYFFYRLtATFNKPAAQLMRLDKATTGPIFSFYSETLAGLPSIRALGLQHEFDT 606
                 4444444444444433333333114567899********************************9997766644444443333333.33333444455555555444444414567777788888888888888899999988888888876655433 PP

  == domain 4    score: 112.8 bits;  conditional E-value: 5.3e-35
   TIGR02204 373 GPsGaGkstllelllrfydPqsGailldGvdlreldpeelrerlalvpqdsalfaasvleniryGrpdasdeeveaaakaaeadefiskl..peGydtllGergvtLsGGqkqriaiarailkdapiLLLdeatsaLdaeseqlvqqaleelmkgrttlviahrLatvlkadrivvldkGriveqGthaeLiak.ggLyarlar 573
                 G +GaGks l   l r  + + G+i +dGvd+ +l  + lr+ + +++qd++lfa+ ++ n+       sde++ aa +     +f+++   +   dt++ e g +Ls G +q + +a a+l+ ++i++Ldeat+++d  ++ ++q+ + +  +  t l iahrL tv++ d ++v+ +G   e G+ a+L+++ g+L+  l+r
  MMETSP1137-20121227|1778_1 713 GRTGAGKSSLSVALFRLVELAAGSITIDGVDISSLGLAMLRRAMTIIQQDAMLFAGTIRSNLDPIGT-HSDEALDAALR---TVDFVRHAggEATLDTNVAEGGANLSAGTRQLLGVAGALLRHSRIVMLDEATASIDFTTDATIQRVVRKSFDAATILTIAHRLDTVIDYDDVIVMSHGVAAECGAPAQLLRNeGSLFSALVR 912
                 779**********************************************************974332.35666665554...56899876335789**********************************************************************************************99752678888775 PP

>> TIGR03796  NHLM_micro_ABC1: NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.6   0.0    0.0014     0.097     495     540 ..      98     143 ..      90     172 .. 0.90
   2 !   32.0   0.0   1.2e-10   8.1e-09     620     701 ..     188     276 ..     176     281 .. 0.87
   3 !    7.8   1.7    0.0024      0.17     201     422 ..     450     674 ..     378     682 .. 0.79
   4 !  115.2   1.9   8.2e-36   5.7e-34     512     709 ..     713     911 ..     705     912 .. 0.90

  Alignments for each domain:
  == domain 1    score: 8.6 bits;  conditional E-value: 0.0014
   TIGR03796 495 iedfslslkpGqrvAlvGgsGsGkstiaklvaGlyepwsGeilfDg 540
                 ++++++++  G+   + G  GsGks + +l+ G  +  +G++++D 
  MMETSP1137-20121227|1778_1  98 LRNINMRMPRGKLTFVLGEVGSGKSSLLQLLLGEMRANRGHMAVDR 143
                 7899*************************************99984 PP

  == domain 2    score: 32.0 bits;  conditional E-value: 1.2e-10
   TIGR03796 620 qrqRleiARaLvknPsiLilDEatsaLDaetEkaide......nlrrRgctciivaHRLstiRd.cdeiivlerGkvverGtHeellak 701
                 q+ R+ +ARaL  +Ps+ +lD+  sa+Da++ +++++       l     t+++v+H L    + +  ++++e G+vv +G  +el++ 
  MMETSP1137-20121227|1778_1 188 QKARISMARALYGKPSLFLLDDPLSAVDAHVSRHLVDfaisglMLTTLRATVVLVSHQLQFTHElAASVVLMEAGRVVAQGDANELASM 276
                 899****************************99987643333346777899********9777736789999*************9876 PP

  == domain 3    score: 7.8 bits;  conditional E-value: 0.0024
   TIGR03796 201 lltallqvvltllqlallrrleiklavassarflwhilrlPveffaqRaageiasRvqlndkvaellsgqlattvldlvlvvfyalvmllydlvlaliaialaainvlalqlvsrkrvdanrrlqq.dagklagvaiaglqsietlkAsglesdffsrwaGyqakllnaeqelgvatallsvlpelltsltsalilvvgglr..vlegeltiGmlvafqsllasf 422
                 ++ ++ ++v+ llq  + ++ +i  ++++ +++l+ +l+ P  ff+    g +    + ++   + l       +l++ ++v  alv+ +  + +al ++ +    +  l+++ +k + + +rl + ++g + +   ++l  + +++A gl+++f + +    a+  +a+      + +l v  +llt++   ++ v + l+   l+ +l+  +lv   ++++ f
  MMETSP1137-20121227|1778_1 450 TVLIVATGVFGLLQACTFAQRTIAASTRIHSTVLSAVLHAPKAFFDTTPLGIVLAVFSKDQDTLDDLFPITLVSLLKCATLVSTALVVSAIAVPVALAVLPVVGYFFYRLTATFNKPAAQLMRLDKaTTGPIFSFYSETLAGLPSIRALGLQHEFDTSLIERLATNHRAHFFWASCNRWLAVRLDLLTAVVVLTVAVCALLLreELDTTLSALALVYILQITSMF 674
                 4456778999*************************************99998777776665555555555556789999999999*999999999999999999999999999999988888987625678889999999999************9999999999999999999999999888888777766555555444311456666666677666666666 PP

  == domain 4    score: 115.2 bits;  conditional E-value: 8.2e-36
   TIGR03796 512 GgsGsGkstiaklvaGlyepwsGeilfDgkpreeiprevlanslalvdqdivlfegtvrdnltlwdetipeedlvrAakDAaihdvilarpggyeaelaegganlsGGqrqRleiARaLvknPsiLilDEatsaLDaetEkaidenlrrR..gctciivaHRLstiRdcdeiivlerGkvverGtHeellakeg.aYarLi 709
                 G  G+Gks ++  +  l e  +G+i++Dg++ +++  ++l+ ++++++qd +lf+gt+r nl     t ++e+l  A++      +    ++ +++++aegganls G rq l +A aL ++  i++lDEat+++D +t+ +i++ +r+     t++ +aHRL t+ d d++iv+ +G   e G   +ll++eg  +++L+
  MMETSP1137-20121227|1778_1 713 GRTGAGKSSLSVALFRLVELAAGSITIDGVDISSLGLAMLRRAMTIIQQDAMLFAGTIRSNLDPI-GTHSDEALDAALRTVDFVRHA-GGEATLDTNVAEGGANLSAGTRQLLGVAGALLRHSRIVMLDEATASIDFTTDATIQRVVRKSfdAATILTIAHRLDTVIDYDDVIVMSHGVAAECGAPAQLLRNEGsLFSALV 911
                 789***********************************************************977.477899999999876444332.345679******************************************************964479999*******************************9997761466665 PP

>> TIGR03797  NHLM_micro_ABC2: NHLM bacteriocin system ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.0     4e-06   0.00028     468     513 ..      97     142 ..      92     145 .. 0.90
   2 !   33.2   0.1   6.1e-11   4.3e-09     593     674 ..     188     276 ..     187     280 .. 0.86
   3 !    6.9   4.1    0.0057       0.4     141     402 ..     410     672 ..     388     702 .. 0.71
   4 !  106.7   4.3   3.6e-33   2.5e-31     486     682 ..     713     911 ..     710     914 .. 0.84

  Alignments for each domain:
  == domain 1    score: 17.3 bits;  conditional E-value: 4e-06
   TIGR03797 468 vLddvslkiepGefvaivGaSGsGKStllrlLLgFekPesGsvlyD 513
                  L+++++++  G+   + G+ GsGKS+ll+lLLg  + + G+++ D
  MMETSP1137-20121227|1778_1  97 ALRNINMRMPRGKLTFVLGEVGSGKSSLLQLLLGEMRANRGHMAVD 142
                 699*******************************888888887666 PP

  == domain 2    score: 33.2 bits;  conditional E-value: 6.1e-11
   TIGR03797 593 QrQRlliAralvrkPrillfDEATSALDNrtQaiVse......sleklkvtRiviAHRLS.TirnadrilvleeGrvveqGsyeeLlak 674
                 Q+ R+ +Aral  kP ++l+D+  SA+D +  ++ ++       l +l++t +++ H L  T + a  ++ +e+Grvv qG  +eL++ 
  MMETSP1137-20121227|1778_1 188 QKARISMARALYGKPSLFLLDDPLSAVDAHVSRHLVDfaisglMLTTLRATVVLVSHQLQfTHELAASVVLMEAGRVVAQGDANELASM 276
                 999*************************9988766553333335899************84666799*******************875 PP

  == domain 3    score: 6.9 bits;  conditional E-value: 0.0057
   TIGR03797 141 vllvgllgtllglvvPl.atgilldeviPdaerslllqvalallaaalgallfqlaqslavlRletavdaslqaavwdrLLrlpasfFreysagdLasramgvsqirrllsgatlkallssifallnlvlllvyslklalvavllalvaiavtlvlgllqvrkerkll....elegklsgltvqlingisKlrvagaeerafaawakefseqrklelkaqriedlltvlnavlpvltsavlfalaisll..aaaklslgsflafntafg 402
                 v l+ llg ++gl+    + +++l++ i +++++     al+ +++ +++ +f l q+ +      a++++++++v+  +L+ p++fF +   g ++      s+ + +l +    +l+s + +++ +   lv+s+    va++++ v+   +  l+ +  +  ++l+    +++g ++++  + ++g+  +r  g ++++ +   ++ + +++ ++ +++++ +l+v  + l +++++++ ++a  l     ++ls+ +++   ++ +
  MMETSP1137-20121227|1778_1 410 VWLALLLGFIFGLACSRaLADFMLGRWISEGTSDA---DALTYTVLIVATGVFGLLQACTFAQRTIAASTRIHSTVLSAVLHAPKAFFDTTPLGIVL---AVFSKDQDTLDDLFPITLVSLLKCATLVSTALVVSAIAVPVALAVLPVVGYFFYRLTATFNKPAAQLMrldkATTGPIFSFYSETLAGLPSIRALGLQHEFDTSLIERLATNHRAHFFWASCNRWLAVRLDLLTAVVVLTVAVCALLLReeLDTTLSALALVYILQITS 672
                 55556666666666543134566677776666554...24556667788899************************************887776443...3445666777777777777777777777777777766666666666665555555555444445555511115567888899999*******************************************99999888777666665554332444455444444444444 PP

  == domain 4    score: 106.7 bits;  conditional E-value: 3.6e-33
   TIGR03797 486 GaSGsGKStllrlLLgFekPesGsvlyDGqdlekldvqavRrqlGvVLQngrllsgsileniaggasltldeawe.aarmagleeDikamPmglhTvisegggtlSGGQrQRlliAralvrkPrillfDEATSALDNrt....QaiVsesleklkvtRiviAHRLSTirnadrilvleeGrvveqGsyeeLlakeG.lfaela 682
                 G  G+GKS+l   L+   + ++Gs+  DG d+++l ++ +Rr + ++ Q++ l++g+i +n+    + + dea + a+r++ +          l T ++egg++lS G rQ l +A al r+ ri+++DEAT  +D +t    Q++V +s++  ++t + iAHRL T+ + d ++v+++G  +e+G   +Ll++eG lf +l+
  MMETSP1137-20121227|1778_1 713 GRTGAGKSSLSVALFRLVELAAGSITIDGVDISSLGLAMLRRAMTIIQQDAMLFAGTIRSNLDPIGTHS-DEALDaALRTVDFVRHAG-GEATLDTNVAEGGANLSAGTRQLLGVAGALLRHSRIVMLDEATASIDFTTdatiQRVVRKSFD--AATILTIAHRLDTVIDYDDVIVMSHGVAAECGAPAQLLRNEGsLFSALV 911
                 789**********************************************************86544444.444440445555554433.346899****************************************98872222555555555..58899**********************************9993455565 PP

>> TIGR01846  type_I_sec_HlyB: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.0   0.0   0.00059     0.041     473     518 ..      98     143 ..      92     175 .. 0.81
   2 !   30.6   0.0   3.3e-10   2.3e-08     598     682 ..     188     277 ..     173     282 .. 0.83
   3 ?   -0.8   2.2         1        71     182     374 ..     446     639 ..     415     666 .. 0.73
   4 !  121.4   0.8   1.1e-37   7.7e-36     490     689 ..     713     911 ..     708     915 .. 0.90

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 0.00059
   TIGR01846 473 lsnlsldikaGeviGivGpsGsGkstltkllqrlyvPekGrvlvdg 518
                 l+n+++ ++ G++  + G+ GsGks l +ll      ++G++ vd 
  MMETSP1137-20121227|1778_1  98 LRNINMRMPRGKLTFVLGEVGSGKSSLLQLLLGEMRANRGHMAVDR 143
                 89****************************9999999999999985 PP

  == domain 2    score: 30.6 bits;  conditional E-value: 3.3e-10
   TIGR01846 598 qrqrialaralvanPrilildeatsaldye.seavim...rnlreickgrtviiiahrlstvra.adrilvlekGkivesGkheellake 682
                 q+ ri++aral ++P +++ld+  sa+d++ s +++    + l   +   tv+ ++h+l+  ++ a  ++++e G++v +G  +el + +
  MMETSP1137-20121227|1778_1 188 QKARISMARALYGKPSLFLLDDPLSAVDAHvSRHLVDfaiSGLMLTTLRATVVLVSHQLQFTHElAASVVLMEAGRVVAQGDANELASMG 277
                 899*************************9846666651114455556677*********9665538899****************98766 PP

  == domain 3    score: -0.8 bits;  conditional E-value: 1
   TIGR01846 182 alallavavaevalsllrtylfahltsridvelgaklyrhllalPlsyfesrrvGdtvarvreleqirefltgsaltvvldll..fvvvflavmffyspkltlvvlvslviylllsvivspilrkrvedkfeksaeaqsflvesvtgietikasavepqfkrrWerqlaayvaasfkvtklgnlasqaieliqkl 374
                 al+  ++ va  +++ll++  fa+ t      + + +   +l  P ++f++   G ++a   + ++  + l   +l+++l      ++ ++   +     l ++ +v   +y l  ++  p  +    dk ++     sf  e+++g+  i+a  ++++f     + la+  +a f       + +  ++l+  +
  MMETSP1137-20121227|1778_1 446 ALTYTVLIVATGVFGLLQACTFAQRTIAASTRIHSTVLSAVLHAPKAFFDTTPLGIVLAVFSKDQDTLDDLFPITLVSLLKCAtlVSTALVVSAIAVPVALAVLPVVGYFFYRLTATFNKPAAQLMRLDK-ATTGPIFSFYSETLAGLPSIRALGLQHEFDTSLIERLATNHRAHFFWASCNRWLAVRLDLLTAV 639
                 4556677778889999999999999999999999999999999999999999999999988666655566666666666654200222222223333445555556666666666666666554332233.45556779************************99999999999998877777766666665544 PP

  == domain 4    score: 121.4 bits;  conditional E-value: 1.1e-37
   TIGR01846 490 GpsGsGkstltkllqrlyvPekGrvlvdgvdlaladPawlrrqvgvvlqenvlfsrsirdnialakPaiseekviaaaklaGahdfisel..kqGyetevgekGaalsGGqrqrialaralvanPrilildeatsaldyeseavimrnlreickgrtviiiahrlstvraadrilvlekGkivesGkheellak.eglyakly 689
                 G++G+Gks l+  l rl     G + +dgvd++ +  a+lrr ++++ q+++lf ++ir n+       + ++ + aa l  + df+ +   +   +t+v e Ga+ls G rq + +a al+   ri++ldeat+++d+ ++a+i+r +r+   + t+++iahrl+tv + d ++v+ +G  +e G  ++ll++ ++l++ l 
  MMETSP1137-20121227|1778_1 713 GRTGAGKSSLSVALFRLVELAAGSITIDGVDISSLGLAMLRRAMTIIQQDAMLFAGTIRSNLDPIG--THSDEALDAA-L-RTVDFVRHAggEATLDTNVAEGGANLSAGTRQLLGVAGALLRHSRIVMLDEATASIDFTTDATIQRVVRKSFDAATILTIAHRLDTVIDYDDVIVMSHGVAAECGAPAQLLRNeGSLFSALV 911
                 899**********************************************************86443..3334444444.3.357899765226789************************************************************************************************99455777775 PP

>> TIGR01193  bacteriocin_ABC: ABC-type bacteriocin transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.3   0.0   0.00014    0.0097     484     570 ..      90     168 ..      82     182 .. 0.80
   2 !   28.3   0.0   1.9e-09   1.3e-07     615     696 ..     187     274 ..     183     279 .. 0.84
   3 !   14.7   0.5   2.5e-05    0.0017     228     399 ..     475     644 ..     436     668 .. 0.73
   4 !   91.5   0.0   1.5e-28     1e-26     507     701 ..     713     905 ..     699     913 .. 0.87

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 0.00014
   TIGR01193 484 Gygsev..ledislkikknekitlvGlsGsGkstlakllvkffqaesGeillngkslkdidkhelrqlinylPqePfifsGsilenlll 570
                 G++s+v  l +i++++ + + + ++G  GsGks+l +ll++   a+ G++ ++        +++    + y+Pq  ++++ ++ en++l
  MMETSP1137-20121227|1778_1  90 GLASDVfaLRNINMRMPRGKLTFVLGEVGSGKSSLLQLLLGEMRANRGHMAVD--------RGA--GPVGYVPQGAWVLNATLRENVVL 168
                 5556553379******************************9999999988754........443..56777777777777777777776 PP

  == domain 2    score: 28.3 bits;  conditional E-value: 1.9e-09
   TIGR01193 615 Gqkqrlalarallsdskvlildestsnldlltekkive....n.llklkdktiifvahrlsvakk.sdkiivldeGkiieqGshkell 696
                  qk r+++aral  +  +++ld+  s +d  + +++v+      +l+    t+++v+h+l+ +++ +  ++ ++ G+++ qG+ +el 
  MMETSP1137-20121227|1778_1 187 XQKARISMARALYGKPSLFLLDDPLSAVDAHVSRHLVDfaisGlMLTTLRATVVLVSHQLQFTHElAASVVLMEAGRVVAQGDANELA 274
                 69*******************************999873332313344478**********98762678999***********99986 PP

  == domain 3    score: 14.7 bits;  conditional E-value: 2.5e-05
   TIGR01193 228 sidiilsyikhlfelPmsffstrrvGeivsrftdaskiidalastilslfldlsilvivglvlvlqniklfllslvaiPvyaviiilfkktfeklnkdameanav....lnssiiedlnGietiksltseeerykkidsefadylekslkyakaeavqqalkavlklilnvvilwv 399
                 s+ i  + +  +++ P +ff t   G +++ f+  +  +d l  ++l  +l  + lv ++lv+    +    ++l ++Pv     + ++ tf+k   + m+ +      + s   e l+G+ +i++l+ ++e  + + +++a+  + ++ +a ++   + l + l+l  +vv+l v
  MMETSP1137-20121227|1778_1 475 STRIHSTVLSAVLHAPKAFFDTTPLGIVLAVFSKDQDTLDDLFPITLVSLLKCATLVSTALVVSAIAVP---VALAVLPVVGYFFYRLTATFNKPAAQLMRLDKAttgpIFSFYSETLAGLPSIRALGLQHEFDTSLIERLATNHRAHFFWASCN---RWLAVRLDLLTAVVVLTV 644
                 455555667788999***************************999999999999998888777766654...56777899999999999999999999997655501114456679***********9887766665556665555555555443...344555555555555544 PP

  == domain 4    score: 91.5 bits;  conditional E-value: 1.5e-28
   TIGR01193 507 GlsGsGkstlakllvkffqaesGeillngkslkdidkhelrqlinylPqePfifsGsilenll.lgakenvsqeeikkaveiaeikddieklplGyqtelseeassisgGqkqrlalarallsdskvlildestsnldlltekkivenll.klkdktiifvahrlsvakksdkiivldeGkiieqGshkellkenGf 701
                 G +G+Gks+l   l ++ +   G i+++g++++ +   +lr+ ++ + q+ ++f+G+i  nl  +g++ +   +   ++v+++         +  ++t+++e ++++s+G +q l +a all +s++++lde+t+++d  t+  i   +  +++  ti+ +ahrl+     d +iv+++G   e G   +ll+++G 
  MMETSP1137-20121227|1778_1 713 GRTGAGKSSLSVALFRLVELAAGSITIDGVDISSLGLAMLRRAMTIIQQDAMLFAGTIRSNLDpIGTHSDEALDAALRTVDFVRHAG----GEATLDTNVAEGGANLSAGTRQLLGVAGALLRHSRIVMLDEATASIDFTTDATIQRVVRkSFDAATILTIAHRLDTVIDYDDVIVMSHGVAAECGAPAQLLRNEGS 905
                 789**********************************************************94377776666666666666654433....35679*******************************************99977655444146679************************************99984 PP

>> TIGR02868  CydC: thiol reductant ABC exporter, CydC subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.1   0.0   1.8e-11   1.2e-09     347     434 ..      94     171 ..      48     178 .. 0.84
   2 !   19.1   0.2   1.3e-06   8.9e-05     476     530 .]     188     246 ..     187     246 .. 0.82
   3 !    7.4   6.9    0.0046      0.32      26     278 ..     424     665 ..     398     676 .. 0.71
   4 !   95.4   4.5   9.4e-30   6.6e-28     368     530 .]     713     873 ..     692     873 .. 0.96

  Alignments for each domain:
  == domain 1    score: 35.1 bits;  conditional E-value: 1.8e-11
   TIGR02868 347 aeevlkgvsldlepGervavvGasGaGKstLlallaglldplkGevtldgvsvaslsesevrrvvsvlaqdaHlFdttvreNlrlarp 434
                 +  +l+++++ ++ G+ + v+G  G+GKs Ll+ll+g + +++G++++d            +  v +++q a + ++t+reN+ l rp
  MMETSP1137-20121227|1778_1  94 DVFALRNINMRMPRGKLTFVLGEVGSGKSSLLQLLLGEMRANRGHMAVDR----------GAGPVGYVPQGAWVLNATLRENVVLSRP 171
                 33489******************************************997..........24579********************998 PP

  == domain 2    score: 19.1 bits;  conditional E-value: 1.3e-06
   TIGR02868 476 erqRlalARaLladapvllLDEPtehLDaeteeelled....Llaaeegrtvvlvthrl 530
                 ++ R+ +ARaL  +  + lLD P   +Da+++++l++     L+ ++ + tvvlv+h+l
  MMETSP1137-20121227|1778_1 188 QKARISMARALYGKPSLFLLDDPLSAVDAHVSRHLVDFaisgLMLTTLRATVVLVSHQL 246
                 678********************************9761111445555666******96 PP

  == domain 3    score: 7.4 bits;  conditional E-value: 0.0046
   TIGR02868  26 lgsavaLlavsawLisraaeqPpvlylsvavvavRafgisravlrYlERLvsHdvalrslgelRvrvYerLaraalallarlrrGdlLarlvaDvdalqdllvRvivPlvvAlvvalaavaliallsvaaalvlaaallvalvvaplvslraarsaeqalarlrselaaqlldllegaaelvvaGaleavlaqveeaereltraekraaaaealgaaltllaaGlavllallvgveavadgrlapvalAvlvL 278
                  + a+a  ++  w is      + l ++v +va+ +fg+ +a   ++ R       +++ +++   v + +  a  a+      G +La++++D d+l+dl+  ++v l+  + +++ a +++a + v++al+++ ++  ++  + + + + a +  +  ++  + + +   ++l+g++ +++ G ++++ +++ e+ +  +ra+   a+ +++ a    l+++++vl +++ +   ++ ++l+ ++ A+   
  MMETSP1137-20121227|1778_1 424 CSRALADFMLGRW-ISEGTSDADALTYTVLIVATGVFGLLQACT-FAQRT------IAASTRIHSTVLSAVLHAPKAFFDTTPLGIVLAVFSKDQDTLDDLFPITLVSLLKCATLVSTALVVSA-IAVPVALAVLPVVGYFFYRLTATFNKPAAQLMRLDKATTGPIFSFYSETLAGLPSIRALGLQHEFDTSLIERLATNHRAHFFWASCNRWLAVRLDLLTAVVVLTVAVCAL--LLREELDTTLSALALV 665
                 3334444444444.677777777888888888888888888754.66664......4566777777888888788888888899*****************99999998887777665555444.4555544444444444444444444444455566677778899999*******************************************999999999999999999988..6677776655443333 PP

  == domain 4    score: 95.4 bits;  conditional E-value: 9.4e-30
   TIGR02868 368 GasGaGKstLlallaglldplkGevtldgvsvaslsesevrrvvsvlaqdaHlFdttvreNlrlarpdatdeellaaLervgLadwlraLpdGldtklgeggarlSGGerqRlalARaLladapvllLDEPtehLDaeteeelledLlaaeegrtvvlvthrl 530
                 G++GaGKs L  +l++l++  +G++t+dgv+++sl    +rr++++++qda lF+ t+r Nl    ++ +de l aaL+ v   +++   +  ldt++ egga lS+G rq l +A aLl + ++++LDE t+++D +t + + + +++  +  t++ ++hrl
  MMETSP1137-20121227|1778_1 713 GRTGAGKSSLSVALFRLVELAAGSITIDGVDISSLGLAMLRRAMTIIQQDAMLFAGTIRSNLD-PIGTHSDEALDAALRTVDFVRHAGG-EATLDTNVAEGGANLSAGTRQLLGVAGALLRHSRIVMLDEATASIDFTTDATIQRVVRKSFDAATILTIAHRL 873
                 89************************************************************8.456789******************9.9**********************************************************************86 PP

>> TIGR01842  type_I_sec_PrtD: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.4   0.0   1.4e-08     1e-06     332     413 ..      96     167 ..      54     182 .. 0.86
   2 !   39.0   0.1   1.1e-12     8e-11     459     540 ..     188     273 ..     185     276 .. 0.87
   3 !   79.6   1.4   5.5e-25   3.8e-23     351     541 ..     713     900 ..     710     902 .. 0.90

  Alignments for each domain:
  == domain 1    score: 25.4 bits;  conditional E-value: 1.4e-08
   TIGR01842 332 ktlkgisfalkaGealaiiGpsgsGkssLarllvGvwlpasGsvrlDgadlkqwdretlGksiGYlPqdveLfeGtvaenia 413
                   l++i++++  G+   ++G  gsGkssL +ll+G +  ++G++ +D  +         G  +GY+Pq+  +++ t+ en+ 
  MMETSP1137-20121227|1778_1  96 FALRNINMRMPRGKLTFVLGEVGSGKSSLLQLLLGEMRANRGHMAVDRGA---------G-PVGYVPQGAWVLNATLRENVV 167
                 579****************************************9998643.........4.599999999999999999985 PP

  == domain 2    score: 39.0 bits;  conditional E-value: 1.1e-12
   TIGR01842 459 qrqRiaLaRalygdPklvvLDePnanLDeeGeqalak.alke..lkarkitvvvithrpsll.elvdkilvlkdGalkafGereev 540
                 q+ Ri++aRalyg+P l +LD+P + +D++    l++ a+    l   ++tvv+++h+ + + el+  ++++++G++ a G+++e+
  MMETSP1137-20121227|1778_1 188 QKARISMARALYGKPSLFLLDDPLSAVDAHVSRHLVDfAISGlmLTTLRATVVLVSHQLQFThELAASVVLMEAGRVVAQGDANEL 273
                 9****************************999998865887611566799*********987357889*************99886 PP

  == domain 3    score: 79.6 bits;  conditional E-value: 5.5e-25
   TIGR01842 351 GpsgsGkssLarllvGvwlpasGsvrlDgadlkqwdretlGksiGYlPqdveLfeGtvaeniaRfeenadaekvieaaklagvhelilrlpkGYdteigegGaaLsgGqrqRiaLaRalygdPklvvLDePnanLDeeGeqalakalkelkarkitvvvithrpsllelvdkilvlkdGalkafGereevl 541
                 G  g+GkssL   l   ++ a+Gs+ +Dg+d++      l + +  + qd  Lf+Gt+  n+  ++   ++++ ++aa  +      +  +   dt+++egGa+Ls+G rq +++a al ++ ++v+LDe  a++D + ++ + + + +     +t+++i+hr   +   d ++v+++G  ++ G   ++l
  MMETSP1137-20121227|1778_1 713 GRTGAGKSSLSVALFRLVELAAGSITIDGVDISSLGLAMLRRAMTIIQQDAMLFAGTIRSNLDPIGT--HSDEALDAALRTVDFVRHAGGEATLDTNVAEGGANLSAGTRQLLGVAGALLRHSRIVMLDEATASIDFTTDATIQRVVRK-SFDAATILTIAHRLDTVIDYDDVIVMSHGVAAECGAPAQLL 900
                 789***************************************************************9..6666677765443333345668899********************************************99888776655.677899**************************999887776 PP

>> TIGR01192  chvA: glucan exporter ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.0      0.54        37     351     395 ..      98     142 ..      89     175 .. 0.86
   2 !   16.6   0.0   7.3e-06   0.00051     476     558 ..     188     275 ..     175     280 .. 0.82
   3 !  110.0   2.7   3.7e-34   2.6e-32     367     577 ..     712     921 ..     702     929 .. 0.88

  Alignments for each domain:
  == domain 1    score: 0.5 bits;  conditional E-value: 0.54
   TIGR01192 351 vrdvsfeakagqtvaivgptgagkttlinllqrvydpksgqilid 395
                 +r++ +++  g+   ++g  g+gk++l++ll      + g++ +d
  MMETSP1137-20121227|1778_1  98 LRNINMRMPRGKLTFVLGEVGSGKSSLLQLLLGEMRANRGHMAVD 142
                 678999999999999***************999888888888887 PP

  == domain 2    score: 16.6 bits;  conditional E-value: 7.3e-06
   TIGR01192 476 erqrlaiarailknapilvldeatsaldvetear.vkdaidal..rknrtt.fiiahrlstvre.adlvlfldqgrliekgsfdeliq 558
                 ++ r+++ara+     +++ld+  sa+d       v  ai  l  +  r+t  +++h+l    e a  v++++ gr++ +g  +el+ 
  MMETSP1137-20121227|1778_1 188 QKARISMARALYGKPSLFLLDDPLSAVDAHVSRHlVDFAISGLmlTTLRATvVLVSHQLQFTHElAASVVLMEAGRVVAQGDANELAS 275
                 578*************************9987652777999762245566615689***977664889*****************976 PP

  == domain 3    score: 110.0 bits;  conditional E-value: 3.7e-34
   TIGR01192 367 vgptgagkttlinllqrvydpksgqilidgvdiatvtreslrksiatvfqdagllnrsirenir.lgredatdeevveaakaaaasdfiekr..lkgydtlvgergnrlsggerqrlaiarailknapilvldeatsaldvetearvkdaidalrknrttfiiahrlstvreadlvlfldqgrliekgsfdeliqkdgr.fakllrasgllieee 577
                  g tgagk++l   l r+ +  +g i+idgvdi+++    lr++++ + qda l+  +ir n+  +g   +  +e ++aa    + df+ +     + dt v e g++ls g rq l +a a+l+ + i++ldeat+++d  t+a ++  +       t + iahrl tv + d v+ +  g   e g+  +l +++g  f +l+r +g    + 
  MMETSP1137-20121227|1778_1 712 GGRTGAGKSSLSVALFRLVELAAGSITIDGVDISSLGLAMLRRAMTIIQQDAMLFAGTIRSNLDpIG---THSDEALDAAL--RTVDFVRHAggEATLDTNVAEGGANLSAGTRQLLGVAGALLRHSRIVMLDEATASIDFTTDATIQRVVRKSFDAATILTIAHRLDTVIDYDDVIVMSHGVAAECGAPAQLLRNEGSlFSALVRDTGTQSAKS 921
                 589***********************************************************86344...44566666654..457999876225679******************************************************99999********************************99988877753889999999776655 PP

>> TIGR02142  modC_ABC: molybdate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   0.0    0.0001     0.007      15      57 ..     100     142 ..      93     145 .. 0.91
   2 !   58.4   0.2   2.2e-18   1.6e-16     136     233 ..     188     287 ..     178     324 .. 0.88
   3 !   47.5   0.2   4.4e-15   3.1e-13      30     223 ..     713     903 ..     699     930 .. 0.83

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 0.0001
   TIGR02142  15 dvdlelpgkgvtalFGrsGsGktslirliaGLtrpdegeivld 57 
                 ++++++p   +t + G+ GsGk+sl++l+ G +r+++g++ +d
  MMETSP1137-20121227|1778_1 100 NINMRMPRGKLTFVLGEVGSGKSSLLQLLLGEMRANRGHMAVD 142
                 578899988999***************************9997 PP

  == domain 2    score: 58.4 bits;  conditional E-value: 2.2e-18
   TIGR02142 136 ekqRvaigRAlLssPeLLlmDePLaaLDekrkkeilPyLer..lsaelkiPilyvsHsldevarladrvvvledGrvkaagkleevlaskdlsllekeea 233
                  k R++++RAl  +P L l+D+PL+a+D +  ++++ +  +  +   l+  +++vsH+l+  + la  vv++e+Grv a+g ++e+++  +l+ + k + 
  MMETSP1137-20121227|1778_1 188 QKARISMARALYGKPSLFLLDDPLSAVDAHVSRHLVDFAISglMLTTLRATVVLVSHQLQFTHELAASVVLMEAGRVVAQGDANELASMGSLPHADKPDD 287
                 589**********************************975433668999******************************************998777654 PP

  == domain 3    score: 47.5 bits;  conditional E-value: 4.4e-15
   TIGR02142  30 GrsGsGktslirliaGLtrpdegeivldgevlqdsrkkiilppekRrvgyvFqeArLFpHlsvrenLr.YGlkraraeerriseekvielLg....iehLleRlpgkLsGGekqRvaigRAlLssPeLLlmDePLaaLDekrkkeilPyLerlsaelki.PilyvsHsldevarladrvvvledGrvkaagkleevlask 223
                 Gr G+Gk+sl  ++  L+ +++g i++dg  + +    + l++ +R+++++ q+A LF+  ++r+nL   G+++ +a +  +++   ++  g    ++  +    ++Ls G +q  +++ AlL + +++++De  a++D +  + i   ++   ++++   il ++H ld v    d v+v+ +G  +  g+++++l+++
  MMETSP1137-20121227|1778_1 713 GRTGAGKSSLSVALFRLVELAAGSITIDGVDISS----LGLAMLRRAMTIIQQDAMLFAG-TIRSNLDpIGTHSDEALDAALRTVDFVRHAGgeatLDTNVAEGGANLSAGTRQLLGVAGALLRHSRIVMLDEATASIDFTTDATIQRVVR---KSFDAaTILTIAHRLDTVIDY-DDVIVMSHGVAAECGAPAQLLRNE 903
                 99***************************87654....678999**************96.8*****8468888888888888888888777122244555556679*************************************9975555...5555314789********986.7799*****999999999998765 PP

>> TIGR00972  3a0107s01c2: phosphate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   2.2e-05    0.0015      15      47 ..      96     128 ..      90     143 .. 0.88
   2 !   41.5   0.0     3e-13   2.1e-11     149     231 ..     188     274 ..     186     282 .. 0.87
   3 !   49.9   0.0   8.2e-16   5.7e-14      34     233 ..     713     902 ..     686     906 .. 0.86

  Alignments for each domain:
  == domain 1    score: 15.7 bits;  conditional E-value: 2.2e-05
   TIGR00972  15 ealkdvnleikknkvtaliGpsGcGkstllrsl 47 
                  al+++n+ +++ k+t ++G  G+Gks+ll+ l
  MMETSP1137-20121227|1778_1  96 FALRNINMRMPRGKLTFVLGEVGSGKSSLLQLL 128
                 69****************************865 PP

  == domain 2    score: 41.5 bits;  conditional E-value: 3e-13
   TIGR00972 149 qqqrlciaralavePevlLlDePtsaLDpiatekieel.iqeLkkk...ytivivthnmqqaarvsdktaffleGelveegeteqif 231
                 q+ r+++aral  +P ++LlD+P sa+D+  ++++ ++ i+ L  +    t+v+v h++q++++++  ++++  G++v +g+++++ 
  MMETSP1137-20121227|1778_1 188 QKARISMARALYGKPSLFLLDDPLSAVDAHVSRHLVDFaISGLMLTtlrATVVLVSHQLQFTHELAASVVLMEAGRVVAQGDANELA 274
                 889**************************998887665266665432238********************************99875 PP

  == domain 3    score: 49.9 bits;  conditional E-value: 8.2e-16
   TIGR00972  34 GpsGcGkstllrslnrlndlveevrieGkvllegkdiydkkldvvelrkkvGmvfqkpnpfpmsiydnva.yglrlkgikdkkeldeive..esLkkaalwdevkdklkksalsLsGGqqqrlciaralavePevlLlDePtsaLDpiatekieeliqeLkkkytivivthnmqqaarvsdktaffleGelveegeteqifek 233
                 G +G+Gks+l  +l rl +l      +G+++++g di +     + lr+ + ++ q    f+ +i  n+  +g++  +     +ld++ +  + +++a+    + +++ + + +Ls G +q l +a al  +  +++lDe t+++D ++ ++i+ ++++  +  ti+ + h ++  +   d ++++ +G   e g ++q++++
  MMETSP1137-20121227|1778_1 713 GRTGAGKSSLSVALFRLVELA-----AGSITIDGVDISSL--GLAMLRRAMTIIQQDAMLFAGTIRSNLDpIGTHSDE-----ALDAALRtvDFVRHAGGEATLDTNVAEGGANLSAGTRQLLGVAGALLRHSRIVMLDEATASIDFTTDATIQRVVRKSFDAATILTIAHRLDTVIDY-DDVIVMSHGVAAECGAPAQLLRN 902
                 789****************98.....9**********876..7899**********************9624444443.....3333333003456666666667888999***************************************************************99986.668899***********999876 PP

>> TIGR03410  urea_trans_UrtE: urea ABC transporter, ATP-binding protein UrtE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.1   0.1   6.4e-08   4.5e-06      15      98 ..      97     168 ..      91     185 .. 0.84
   2 !   37.3   0.0   6.2e-12   4.3e-10     136     220 ..     188     274 ..     185     277 .. 0.89
   3 !   41.5   0.0   3.1e-13   2.2e-11      33     215 ..     713     895 ..     694     904 .. 0.82

  Alignments for each domain:
  == domain 1    score: 24.1 bits;  conditional E-value: 6.4e-08
   TIGR03410  15 vlrdvslevekgevvavlGrngvGkttllkalvgllkvksGeielegeditklkpeervkaGiayvpqGreifpkltveenlel 98 
                 +lr++++++++g+++ vlG  g Gk++ll+ l+g +++++G+++++           r +  ++yvpqG  ++   t +en+ l
  MMETSP1137-20121227|1778_1  97 ALRNINMRMPRGKLTFVLGEVGSGKSSLLQLLLGEMRANRGHMAVD-----------RGAGPVGYVPQGAWVLN-ATLRENVVL 168
                 699**************************************99775...........56667888888887775.477888765 PP

  == domain 2    score: 37.3 bits;  conditional E-value: 6.2e-12
   TIGR03410 136 qqqqlaiaRaLvtePklllLDePteGiqPsiikei.ekvikela.kekdlaillveqvldfaleladrylvlerGevvaegekeeld 220
                 q+  +++aRaL  +P l+lLD+P   +   + +++ + +i+ l  ++   +++lv ++l+f+ ela +++++e G+vva+g+++el 
  MMETSP1137-20121227|1778_1 188 QKARISMARALYGKPSLFLLDDPLSAVDAHVSRHLvDFAISGLMlTTLRATVVLVSHQLQFTHELAASVVLMEAGRVVAQGDANELA 274
                 88899**************************9986156888776256789*******************************999875 PP

  == domain 3    score: 41.5 bits;  conditional E-value: 3.1e-13
   TIGR03410  33 GrngvGkttllkalvgllkvksGeielegeditklkpeervkaGiayvpqGreifpkltveenle.lglealkkkekkip..eeiyelF..PvlkemlkRrgGdLsGGqqqqlaiaRaLvtePklllLDePteGiqPsiikeiekvikelakekdlaillveqvldfaleladrylvlerGevvaege 215
                 Gr g+Gk++l  al  l++  +G+i+++g di++l   +  ++ ++ + q  ++f+  t++ nl  +g ++ ++ + ++   + + +      l++  +  g +Ls G +q l +a aL+ + ++++LDe t  i     + i++v+++  +    +il + + ld + ++ d ++v+++G   + g+
  MMETSP1137-20121227|1778_1 713 GRTGAGKSSLSVALFRLVELAAGSITIDGVDISSLG-LAMLRRAMTIIQQDAMLFAG-TIRSNLDpIGTHSDEALDAALRtvDFVRHAGgeATLDTNVAEGGANLSAGTRQLLGVAGALLRHSRIVMLDEATASIDFTTDATIQRVVRKSFD--AATILTIAHRLDTVIDY-DDVIVMSHGVAAECGA 895
                 8*******************************9986.5778999********99986.9*****845655555444444311333332222567777788888********************************************98665..5799999*******995.7789999998777665 PP

>> TIGR01186  proV: glycine betaine/L-proline transport ATP binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.3   0.0    0.0033      0.23       8      53 ..      97     142 ..      90     145 .. 0.89
   2 !   35.1   0.0   2.5e-11   1.7e-09     134     217 ..     188     273 ..     173     281 .. 0.88
   3 !   59.5   0.0   9.4e-19   6.5e-17      26     225 ..     713     907 ..     710     946 .. 0.78

  Alignments for each domain:
  == domain 1    score: 8.3 bits;  conditional E-value: 0.0033
   TIGR01186   8 gvndvdleieeGeiiviiGlsGsGkstlvrllnrliePtaGkilid 53 
                 +++++++ +  G +  ++G  GsGks+l++ll   +   +G++ +d
  MMETSP1137-20121227|1778_1  97 ALRNINMRMPRGKLTFVLGEVGSGKSSLLQLLLGEMRANRGHMAVD 142
                 7899***************************988888888888777 PP

  == domain 2    score: 35.1 bits;  conditional E-value: 2.5e-11
   TIGR01186 134 mqqrvGlaralaaePdlllmdeafsaldPlirdelqde.lvklq.kklqktivfithdldealrlgdrivilkaGeivqvGtPdei 217
                 ++ r+ +aral  +P l+l+d+++sa+d  +  +l d  +  l  ++l+ t+v+++h l  +  l+  +v+++aG +v  G  +e+
  MMETSP1137-20121227|1778_1 188 QKARISMARALYGKPSLFLLDDPLSAVDAHVSRHLVDFaISGLMlTTLRATVVLVSHQLQFTHELAASVVLMEAGRVVAQGDANEL 273
                 789*************************9998888885155554278899****************************99988876 PP

  == domain 3    score: 59.5 bits;  conditional E-value: 9.4e-19
   TIGR01186  26 GlsGsGkstlvrllnrliePtaGkilidGediaeisdaelrevrrkkiamviqkialfPhmtildnislglellkideqerkekalealklvd....leeyedryPdelsGGmqqrvGlaralaaePdlllmdeafsaldPlirdelqdelvklqkklqktivfithdldealrlgdrivilkaGeivqvGtPdeilrnPaney 225
                 G +G+Gks+l   l rl+e +aG i idG+di  +  a l    r+ +  +iq+ a++   ti  n++        ++ +   ++ + ++  +    l+  + +   +ls G +q +G+a al  +  ++++dea +++d  +   +q  + k  +    ti+ i+h ld  +   d ++++ +G     G+P ++lrn    +
  MMETSP1137-20121227|1778_1 713 GRTGAGKSSLSVALFRLVELAAGSITIDGVDISSLGLAML----RRAM-TIIQQDAMLFAGTIRSNLDPIGTHS-DEALDAALRTVDFVRHAGgeatLDTNVAEGGANLSAGTRQLLGVAGALLRHSRIVMLDEATASIDFTTDATIQRVVRKSFD--AATILTIAHRLDTVIDYDD-VIVMSHGVAAECGAPAQLLRNEGSLF 907
                 789********************************99999....5555.567777888889*****97543322.233334445556666655111155666667789****************************************99888665..57*************9877.55799****************87655 PP

>> TIGR03864  PQQ_ABC_ATP: ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   0.1   2.1e-06   0.00014      15      60 ..      96     141 ..      90     146 .. 0.93
   2 !   26.9   0.2   8.9e-09   6.2e-07     137     221 ..     188     275 ..     177     282 .. 0.81
   3 !   64.2   1.4   3.6e-20   2.5e-18      34     224 ..     713     904 ..     691     913 .. 0.86

  Alignments for each domain:
  == domain 1    score: 19.2 bits;  conditional E-value: 2.1e-06
   TIGR03864  15 ralddvsltvakgefvaLLGpnGaGkstLfslltrLyeakegeikv 60 
                  al+++++++++g+++ +LG  G+Gks L++ll + ++a++g+++v
  MMETSP1137-20121227|1778_1  96 FALRNINMRMPRGKLTFVLGEVGSGKSSLLQLLLGEMRANRGHMAV 141
                 589**************************************99987 PP

  == domain 2    score: 26.9 bits;  conditional E-value: 8.9e-09
   TIGR03864 137 hrrrveiarallhePklLLlDeatvGLDie.sraalveevrelv.reeglsvLWathlvdevea.edrlvvlhkGkvlaqGaaaelaa 221
                 ++ r+ +aral  +P+l LlD++   +D++ sr+ +  ++  l+ ++ + +v+   h ++  ++ + ++v+++ G+v+aqG a+ela+
  MMETSP1137-20121227|1778_1 188 QKARISMARALYGKPSLFLLDDPLSAVDAHvSRHLVDFAISGLMlTTLRATVVLVSHQLQFTHElAASVVLMEAGRVVAQGDANELAS 275
                 6789************************98356666667777652455777888888877665427789999***********99975 PP

  == domain 3    score: 64.2 bits;  conditional E-value: 3.6e-20
   TIGR03864  34 GpnGaGkstLfslltrLyeakegeikvaGldlrrapkealarlGvvfqqstlDldlsveqnlryhaaLhGlsraeaeer....ieealarlglaeraeekvreLnGGhrrrveiarallhePklLLlDeatvGLDiesraalveevrelvreeglsvLWathlvdeveaedrlvvlhkGkvlaqGaaaelaaead 224
                 G  GaGks L   l rL+e ++g+i++ G+d+++   ++l+r   + qq ++    +++ nl    + h     +a+ r    +++a  +  l    +e   +L+ G r+ + +a all + ++++lDeat+ +D ++ a++++ vr+    +  ++L   h +d v + d+++v+ +G  +  Ga+a+l ++++
  MMETSP1137-20121227|1778_1 713 GRTGAGKSSLSVALFRLVELAAGSITIDGVDISSLGLAMLRRAMTIIQQDAMLFAGTIRSNLDPIGT-HSDEALDAALRtvdfVRHAGGEATLDTNVAEGGANLSAGTRQLLGVAGALLRHSRIVMLDEATASIDFTTDATIQRVVRKSF--DAATILTIAHRLDTVIDYDDVIVMSHGVAAECGAPAQLLRNEG 904
                 789***********************************************************97654.44444444444000144445556666666667789*********************************************99..77899********************************998765 PP

>> TIGR03873  F420-0_ABC_ATP: proposed F420-0 ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.3   0.1     3e-09   2.1e-07      14      61 ..      95     142 ..      84     153 .. 0.89
   2 !   37.7   0.5     4e-12   2.8e-10     143     224 ..     189     273 ..     176     279 .. 0.87
   3 !   41.2   3.6   3.4e-13   2.3e-11      34     227 ..     713     902 ..     696     907 .. 0.88

  Alignments for each domain:
  == domain 1    score: 28.3 bits;  conditional E-value: 3e-09
   TIGR03873  14 rlivddvdvtaPaGaltgllGPnGsGkstllrllaGllapdaGevdla 61 
                 +  + ++++ +P G+lt +lG  GsGks ll+ll G +++++G++ ++
  MMETSP1137-20121227|1778_1  95 VFALRNINMRMPRGKLTFVLGEVGSGKSSLLQLLLGEMRANRGHMAVD 142
                 56678999************************************9765 PP

  == domain 2    score: 37.7 bits;  conditional E-value: 4e-12
   TIGR03873 143 rqrvhlaralaqePklllldePtnhldvsaqlellal.vrela..aegvtvvvalhdlnlaasvcdhvvvldgGrvvaaGppaev 224
                 + r+ +aral  +P+l+lld+P   +d +   +l+ + ++ l+  + ++tvv+  h l+++ +++  vv++++Grvva G+++e+
  MMETSP1137-20121227|1778_1 189 KARISMARALYGKPSLFLLDDPLSAVDAHVSRHLVDFaISGLMltTLRATVVLVSHQLQFTHELAASVVLMEAGRVVAQGDANEL 273
                 679************************8887777765244443336799*******************************99875 PP

  == domain 3    score: 41.2 bits;  conditional E-value: 3.4e-13
   TIGR03873  34 GPnGsGkstllrllaGllapdaGevdlagadlkalsrrararrvalveqdsdaevplsvrdvvalGriPhrslfaadsd.edaevvdralarvelssladrdlstlsGGerqrvhlaralaqePklllldePtnhldvsaqlellalvrelaaegvtvvvalhdlnlaasvcdhvvvldgGrvvaaGppaevltp 227
                 G  G+Gks l   l  l++ +aG+++++g+d+ +l      r +++++qd+   +  ++r    l  i  +s  a d++   ++ v++a +++ l++        ls G rq   +a al ++ ++++lde t  +d ++   + ++vr+   + +t++   h l+  + + d+v+v+++G  + +G pa++l  
  MMETSP1137-20121227|1778_1 713 GRTGAGKSSLSVALFRLVELAAGSITIDGVDISSLGLAMLRRAMTIIQQDAMLFAG-TIRS--NLDPIGTHSDEALDAAlRTVDFVRHAGGEATLDTNVAEGGANLSAGTRQLLGVAGALLRHSRIVMLDEATASIDFTTDATIQRVVRKS-FDAATILTIAHRLDTVIDY-DDVIVMSHGVAAECGAPAQLLRN 902
                 678******************************9999988899999*999876554.5554..46666677777777652568899*******999988889999********************************************99.7889999999****99988.88****************99865 PP

>> TIGR02673  FtsE: cell division ATP-binding protein FtsE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.4   0.0   4.3e-10     3e-08      14      62 ..      94     142 ..      87     145 .. 0.93
   2 !   24.8   0.1   4.5e-08   3.1e-06     143     213 ..     189     262 ..     183     263 .. 0.88
   3 !   45.1   0.3   2.8e-14   1.9e-12      35     199 ..     713     875 ..     694     888 .. 0.80

  Alignments for each domain:
  == domain 1    score: 31.4 bits;  conditional E-value: 4.3e-10
   TIGR02673  14 gveaLkdvslkiekgeflfltGasGaGkttllklllgaekpsrGeveva 62 
                 +v aL+++++++ +g+++f+ G+ G+Gk++ll+lllg  +++rG++ v+
  MMETSP1137-20121227|1778_1  94 DVFALRNINMRMPRGKLTFVLGEVGSGKSSLLQLLLGEMRANRGHMAVD 142
                 6789*****************************************9885 PP

  == domain 2    score: 24.8 bits;  conditional E-value: 4.5e-08
   TIGR02673 143 qqRvaiaRaivnkPelllaDePtGnlDdelserildllke...lnkrGttvivathdeelvervkkrvlelekg 213
                 + R+++aRa+  kP+l+l D+P   +D+++s++++d   +   l++  +tv++++h+ +++++ ++ v+ +e+g
  MMETSP1137-20121227|1778_1 189 KARISMARALYGKPSLFLLDDPLSAVDAHVSRHLVDFAISglmLTTLRATVVLVSHQLQFTHELAASVVLMEAG 262
                 67*********************************98543222567789******************9999988 PP

  == domain 3    score: 45.1 bits;  conditional E-value: 2.8e-14
   TIGR02673  35 GasGaGkttllklllgaekpsrGevevagedvarlrerelpllRrkigvvfqDfkllkdrtvlenvalalevrgkkeeeiq.kr...veevlelvgledkakalpeelsgGeqqRvaiaRaivnkPelllaDePtGnlDdelserildllkelnkrGttvivathdeel 199
                 G+ GaGk++l   l+   +  +G+++++g d+++l    l++lRr ++++ qD  l+ + t+  n+  ++  + +++ +   ++   v+++     l+  + +   +ls G +q  ++a a++++ ++++ De t  +D ++ + i +++++  ++ +t++  +h  + 
  MMETSP1137-20121227|1778_1 713 GRTGAGKSSLSVALFRLVELAAGSITIDGVDISSL---GLAMLRRAMTIIQQDAMLF-AGTIRSNLD-PIGTHSDEALDAAlRTvdfVRHAGGEATLDTNVAEGGANLSAGTRQLLGVAGALLRHSRIVMLDEATASIDFTTDATIQRVVRKSFDA-ATILTIAHRLDT 875
                 89*****************************9988...69*************8665.668888876.33333333333330330115555556668888888899********************************************998776.567777776654 PP

>> TIGR01188  drrA: daunorubicin resistance ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   0.0    0.0001    0.0073       5      52 ..      94     141 ..      92     144 .. 0.92
   2 !   37.8   0.0   3.9e-12   2.7e-10     129     229 ..     188     291 ..     175     333 .. 0.70
   3 !   45.2   0.3   2.3e-14   1.6e-12      26     235 ..     713     923 ..     711     955 .. 0.75

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 0.0001
   TIGR01188   5 efkAvdgvnlkveegevfglLGPnGAGKtttikmLttllkPdsGtarv 52 
                 ++ A++++n+++++g++  +LG  G GK+ ++++L + ++ + G+  v
  MMETSP1137-20121227|1778_1  94 DVFALRNINMRMPRGKLTFVLGEVGSGKSSLLQLLLGEMRANRGHMAV 141
                 6789*******************************9999999988766 PP

  == domain 2    score: 37.8 bits;  conditional E-value: 3.9e-12
   TIGR01188 129 mrrrlelaasliaqPevlfLDEPtiGLDprtrraiwdl.ieelkke..gvtilltthyleeadkladrvaiidkGkiiaedtpeeLKe........rvgkevveverrdike 229
                 ++ r+++a++l  +P+++ LD+P + +D++  r++ d+ i+ l  +    t++l +h+l+   +la  v +++ G+++a++ ++eL +        +           d+++
  MMETSP1137-20121227|1778_1 188 QKARISMARALYGKPSLFLLDDPLSAVDAHVSRHLVDFaISGLMLTtlRATVVLVSHQLQFTHELAASVVLMEAGRVVAQGDANELASmgslphadK--------PDDDAQD 291
                 789**************************98888887526665433359*************************************96333332221........2222222 PP

  == domain 3    score: 45.2 bits;  conditional E-value: 2.3e-14
   TIGR01188  26 GPnGAGKtttikmLttllkPdsGtarvaGyDvvrepd.evRrsigvvpqkasvdedLtarenlellgelyglpkkeaeeraeellelve....lkeaadkkvktysgGmrrrlelaasliaqPevlfLDEPtiGLDprtrraiwdlieelkkegvtilltthyleeadkladrvaiidkGkiiaedtpeeLKervgkevveverrdikelkkevs 235
                 G  GAGK+ +   L  l++  +G+ ++ G D+ +     +Rr ++++ q+a +    t r nl  +g   +   ++a  r+ + +        l     +   ++s G r+ l +a +l+ + +++ LDE t  +D +t ++i +++++  +   til  +h l+ +  + d v+++++G+ +  ++p +L ++ g+ +  ++r    + +k+ +
  MMETSP1137-20121227|1778_1 713 GRTGAGKSSLSVALFRLVELAAGSITIDGVDISSLGLaMLRRAMTIIQQDAMLFA-GTIRSNLDPIGTHSDEALDAAL-RTVDFVRHAGgeatLDTNVAEGGANLSAGTRQLLGVAGALLRHSRIVMLDEATASIDFTTDATIQRVVRKSFD-AATILTIAHRLDTVIDY-DDVIVMSHGVAAECGAPAQLLRNEGSLFSALVRDTGTQSAKSLR 923
                 567*****************************99765388999999988887775.599******9998887766654.55555555440111444555555689******************************************98765.5799999*****99988.7799****************987777665544433333222222 PP

>> TIGR00968  3a0106s01: sulfate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.7   0.1   3.8e-07   2.6e-05      12      59 ..      94     141 ..      85     147 .. 0.92
   2 !   42.8   0.1   1.3e-13     9e-12     134     219 ..     187     274 ..     175     280 .. 0.90
   3 !   34.6   0.1   4.3e-11     3e-09      33     226 ..     713     907 ..     707     912 .. 0.79

  Alignments for each domain:
  == domain 1    score: 21.7 bits;  conditional E-value: 3.8e-07
   TIGR00968  12 dfqalddvdlevktGslvallGpsGsGkstllrviaGlekpdsGrill 59 
                 d+ al ++++ ++ G+l+ +lG  GsGks+ll+++ G  + + G++ +
  MMETSP1137-20121227|1778_1  94 DVFALRNINMRMPRGKLTFVLGEVGSGKSSLLQLLLGEMRANRGHMAV 141
                 6779*********************************99999999876 PP

  == domain 2    score: 42.8 bits;  conditional E-value: 1.3e-13
   TIGR00968 134 Gqrqrvalaralavepqvllldepfgaldakvrkelrawlrk..lhdevkvttvfvthdqeealevadrivvlekGkieqvgsaeevy 219
                  q+ r+++aral  +p ++lld+p++a+da+v ++l  +     +   ++ t v+v+h+ + + e+a  +v++e G++   g a+e+ 
  MMETSP1137-20121227|1778_1 187 XQKARISMARALYGKPSLFLLDDPLSAVDAHVSRHLVDFAISglMLTTLRATVVLVSHQLQFTHELAASVVLMEAGRVVAQGDANELA 274
                 599*********************************988543226789******************************9999998875 PP

  == domain 3    score: 34.6 bits;  conditional E-value: 4.3e-11
   TIGR00968  33 GpsGsGkstllrviaGlekpdsGrilleGrdvtrvk..vrdreiGfvfqhyalfkhltvrdnia.fGleirkkdkakik..akveellelvqleklgdrypsqlsGGqrqrvalaralavepqvllldepfgaldakvrkelrawlrklhdevkvttvfvthdqeealevadrivvlekGkieqvgsaeevydepataf 226
                 G +G+Gks+l  ++  l +  +G i+++G d++ +   + +r + ++ q+  lf   t+r n+  +G +      a+ +  + v +      l+       ++ls G rq + +a al  + ++++lde  +++d      +++ +rk  d   + t  ++h  +  ++  d+++v+++G   + g+++++ ++  + f
  MMETSP1137-20121227|1778_1 713 GRTGAGKSSLSVALFRLVELAAGSITIDGVDISSLGlaMLRRAMTIIQQDAMLF-AGTIRSNLDpIGTHSDEALDAALRtvDFVRHAGGEATLDTNVAEGGANLSAGTRQLLGVAGALLRHSRIVMLDEATASIDFTTDATIQRVVRKSFDAATILT--IAHRLDTVIDY-DDVIVMSHGVAAECGAPAQLLRNEGSLF 907
                 678******************************976114567776666665555.579****96256555444333333013344444445565556667899**********************************************99876655..68988888886.77999**************999877766 PP

>> TIGR02315  ABC_phnC: phosphonate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   0.0   8.7e-07   6.1e-05      14      61 ..      94     141 ..      88     145 .. 0.88
   2 !   35.9   0.1   1.6e-11   1.1e-09     150     234 ..     188     274 ..     178     277 .. 0.90
   3 !   35.7   0.9   1.8e-11   1.3e-09      35     217 ..     713     884 ..     710     901 .. 0.81

  Alignments for each domain:
  == domain 1    score: 20.4 bits;  conditional E-value: 8.7e-07
   TIGR02315  14 gkqalknvnleikkGelvaviGlsGaGkstllrsinrlveissgsill 61 
                 +  al+n+n+ + +G+l+ v+G+ G+Gks ll+ + + ++ ++g++ +
  MMETSP1137-20121227|1778_1  94 DVFALRNINMRMPRGKLTFVLGEVGSGKSSLLQLLLGEMRANRGHMAV 141
                 6679*****************************998888888887766 PP

  == domain 2    score: 35.9 bits;  conditional E-value: 1.6e-11
   TIGR02315 150 qqqRvaiaRalaqqpklilaDEPiasLDpksskqvmdllkr..inkekgitvivnlHqvdlakkyadrivglkageivfdgasseld 234
                 q+ R+++aRal  +p+l l D+P++++D + s++++d   +  +      tv++  Hq++++++ a  +v ++ag++v +g ++el 
  MMETSP1137-20121227|1778_1 188 QKARISMARALYGKPSLFLLDDPLSAVDAHVSRHLVDFAISglMLTTLRATVVLVSHQLQFTHELAASVVLMEAGRVVAQGDANELA 274
                 899********************************996543225677889999999**************************99986 PP

  == domain 3    score: 35.7 bits;  conditional E-value: 1.8e-11
   TIGR02315  35 GlsGaGkstllrsinrlveissgsillegkevtklkkkelrklrkkigmifqeynlierltvlenvLsgrlgakstlksllglfseedkekAlelLervglaelaakradqLsGGqqqRvaiaRalaqqpklilaDEPiasLDpksskqvmdllkrinkekgitvivnlHqvdlakkyadriv 217
                 G+ GaGks l  ++ rlve   gsi+++g ++++l    l +lr+ +++i q+  l    t+ +n+      + ++l   l++     ++          l+   a+   +Ls G +q +++a al++++++++ DE +as+D ++  ++ +++++    +  t++   H++d +  y d iv
  MMETSP1137-20121227|1778_1 713 GRTGAGKSSLSVALFRLVELAAGSITIDGVDISSLG---LAMLRRAMTIIQQDAMLF-AGTIRSNLDPIGTHSDEALDAALRTVDFVRHAGGE-----ATLDTNVAEGGANLSAGTRQLLGVAGALLRHSRIVMLDEATASIDFTTDATIQRVVRKSF--DAATILTIAHRLDTVIDYDDVIV 884
                 899*****************************9765...778899999998887665.56777787666666677777777765544444443.....3455666777889*************************************9999999855..455666677*********88776 PP

>> TIGR03265  PhnT2: putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.8   0.0   0.00016     0.011      18      63 ..      96     141 ..      90     145 .. 0.92
   2 !   44.5   0.2   3.6e-14   2.5e-12     139     222 ..     188     273 ..     186     278 .. 0.91
   3 !   32.4   0.2   1.7e-10   1.2e-08      37     232 ..     713     909 ..     711     955 .. 0.77

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 0.00016
   TIGR03265  18 talkdislsvkkgelvclLGPsGCGkttLLriiaGLekqdaGaill 63 
                  al++i++ + +g l  +LG  G Gk++LL+++ G  ++++G++++
  MMETSP1137-20121227|1778_1  96 FALRNINMRMPRGKLTFVLGEVGSGKSSLLQLLLGEMRANRGHMAV 141
                 589***************************************9876 PP

  == domain 2    score: 44.5 bits;  conditional E-value: 3.6e-14
   TIGR03265 139 qqqrvaLaralalsPglLLLDePlsaLDakvrekLre.elkklq.rklgvttimvthdqeealslaDrivvmnkgkieqvgtPeei 222
                 q+ r+++aral  +P+l+LLD+Plsa+Da+v  +L    +  l    l  t ++v h+ +    la  +v m++g++   g  +e+
  MMETSP1137-20121227|1778_1 188 QKARISMARALYGKPSLFLLDDPLSAVDAHVSRHLVDfAISGLMlTTLRATVVLVSHQLQFTHELAASVVLMEAGRVVAQGDANEL 273
                 889****************************9999863687765279******************************999887775 PP

  == domain 3    score: 32.4 bits;  conditional E-value: 1.7e-10
   TIGR03265  37 GPsGCGkttLLriiaGLekqdaGaillggrditrl..ppqkrdyGivfqsYaLfPnltvaenia.yGLknkklkre..evaerveelLelvglsgseekyPgqlsGGqqqrvaLaralalsPglLLLDePlsaLDakvrekLreelkklqrklgvttim.vthdqeealslaDrivvmnkgkieqvgtPeeiYeqPatkfva 232
                 G  G Gk++L  ++  L +  aG+i+++g di++l  +  +r   i+ q   Lf   t+++n++  G ++ +   +  ++ + v+++     l+++     + ls G +q + +a al     +++LDe  +++D    + +++ ++k    ++ +ti+ ++h  +  +   D ++vm +g+   +g+P+++ ++  + f a
  MMETSP1137-20121227|1778_1 713 GRTGAGKSSLSVALFRLVELAAGSITIDGVDISSLglAMLRRAMTIIQQDAMLFAG-TIRSNLDpIGTHSDEALDAalRTVDFVRHAGGEATLDTNVAEGGANLSAGTRQLLGVAGALLRHSRIVMLDEATASIDFTTDATIQRVVRKS---FDAATILtIAHRLDTVID-YDDVIVMSHGVAAECGAPAQLLRNEGSLFSA 909
                 6789*****************************97225678999999999999976.999999745666655433301223345555556678888889999***********************************999999877765...555555414666666555.67799******************99999876 PP

>> TIGR01277  thiQ: thiamine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.8   0.0   0.00042     0.029      18      58 ..     102     142 ..      94     152 .. 0.90
   2 !   32.0   0.1   2.8e-10     2e-08     123     212 ..     178     269 ..     158     270 .. 0.85
   3 !   41.7   0.1     3e-13   2.1e-11      31     205 ..     713     888 ..     708     895 .. 0.87

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 0.00042
   TIGR01277  18 dlsveaGervailGesGaGkstllnliaGflepasGeikvn 58 
                 ++ + +G+   +lGe G+Gks+ll+l+ G +   +G++ v+
  MMETSP1137-20121227|1778_1 102 NMRMPRGKLTFVLGEVGSGKSSLLQLLLGEMRANRGHMAVD 142
                 67778999999*********************999999987 PP

  == domain 2    score: 32.0 bits;  conditional E-value: 2.8e-10
   TIGR01277 123 erlpeelsGGqrqrvalarclvrekpillldepfsaldpklreemlal.vkk.ladekkltlllvthslsdaaaiasqvvvvedGkikvlsk 212
                 +r+ e+    q+ r+++ar l  +  ++lld+p+sa+d ++ + ++ + ++  +    + t++lv+h+l+   + a  vv++e G++  +++
  MMETSP1137-20121227|1778_1 178 NRVVERDLVXQKARISMARALYGKPSLFLLDDPLSAVDAHVSRHLVDFaISGlMLTTLRATVVLVSHQLQFTHELAASVVLMEAGRVVAQGD 269
                 5665655667**************9***************99988754244415577889**************************988765 PP

  == domain 3    score: 41.7 bits;  conditional E-value: 3e-13
   TIGR01277  31 GesGaGkstllnliaGflepasGeikvndkd..htrsapyerpvsmlfqennlfahltvrqnig.lGlkpglklnavqk..ekvedvarqvGiadylerlpeelsGGqrqrvalarclvrekpillldepfsaldpklreemlalvkkladekkltlllvthslsdaaaiasqvvvvedG 205
                 G +GaGks+l   +  ++e a G+i+++++d   +++a  +r ++++ q+  lfa  t+r n+  +G +    l+a  +  + v+++  +  ++  ++    +ls G rq + +a  l+r+  i++lde  +++d +    +  +v+k+ d    t+l ++h+l+ ++   + v+v+++G
  MMETSP1137-20121227|1778_1 713 GRTGAGKSSLSVALFRLVELAAGSITIDGVDisSLGLAMLRRAMTIIQQDAMLFAG-TIRSNLDpIGTHSDEALDAALRtvDFVRHAGGEATLDTNVAEGGANLSAGTRQLLGVAGALLRHSRIVMLDEATASIDFTTDATIQRVVRKSFDA--ATILTIAHRLDTVIDY-DDVIVMSHG 888
                 789*******9999999***********8872257899****************96.9999995599999999987654125678888899999999999***********************************************99885..79*******9988775.567777776 PP

>> TIGR00960  3a0501s02: type II secretory pathway family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.5   0.1   5.2e-11   3.6e-09      14      63 ..      93     142 ..      85     145 .. 0.92
   2 !   19.2   0.1   2.5e-06   0.00017     144     215 ..     189     263 ..     184     264 .. 0.87
   3 !   35.8   0.5   2.1e-11   1.5e-09      36     206 ..     713     881 ..     709     889 .. 0.80

  Alignments for each domain:
  == domain 1    score: 34.5 bits;  conditional E-value: 5.2e-11
   TIGR00960  14 aaelaldnvtvkiekGelvflvGhsGaGkstllklilgiekpsaGkirvs 63 
                 +   al n+++++++G+l+f+ G+ G+Gks+ll+l+lg  ++++G++ v 
  MMETSP1137-20121227|1778_1  93 SDVFALRNINMRMPRGKLTFVLGEVGSGKSSLLQLLLGEMRANRGHMAVD 142
                 55679****************************************99875 PP

  == domain 2    score: 19.2 bits;  conditional E-value: 2.5e-06
   TIGR00960 144 qqrvaiaravvnkPallladePtgnlddelsrdilell.ee..vnraGttvlvathdenlveskrkrvltlskGk 215
                 + r+++ara+  kP+l+l d+P + +d ++sr+++++      +  +  tv++ +h+ ++ ++    v+ ++ G+
  MMETSP1137-20121227|1778_1 189 KARISMARALYGKPSLFLLDDPLSAVDAHVSRHLVDFAiSGlmLTTLRATVVLVSHQLQFTHELAASVVLMEAGR 263
                 579*******************************997524422556678***************99999999997 PP

  == domain 3    score: 35.8 bits;  conditional E-value: 2.1e-11
   TIGR00960  36 GhsGaGkstllklilgiekpsaGkirvsgqdltklrdrevpflrrqiGivfqdfkllsdrtvydnvalalriiGvkgreieervsaalekv...G....lkdkakalPvqlsgGeqqrvaiaravvnkPallladePtgnlddelsrdilelleevnraGttvlvathdenlveskrk 206
                 G +GaGks+l   +    + +aG i + g d++ l    +++lrr + i+ qd  l+   t+  n    l  iG++++e+ + +  +++ v   G    l     +   +ls G +q +++a a++++  +++ de t+ +d  +   i +++++   a  t+l  +h  + v ++  
  MMETSP1137-20121227|1778_1 713 GRTGAGKSSLSVALFRLVELAAGSITIDGVDISSLG---LAMLRRAMTIIQQDAMLF-AGTIRSN----LDPIGTHSDEALDAALRTVDFVrhaGgeatLDTNVAEGGANLSAGTRQLLGVAGALLRHSRIVMLDEATASIDFTTDATIQRVVRKSFDA-ATILTIAHRLDTVIDYDD 881
                 889********9999999**************9985...899***********8665.5677776....78899999998887777777662222222255555566789******************************************9987665.567777777776666654 PP

>> TIGR02769  nickel_nikE: nickel import ATP-binding protein NikE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.1   3.7e-05    0.0026      26      68 ..      97     139 ..      90     145 .. 0.92
   2 !   35.2   0.1   2.7e-11   1.9e-09     155     241 ..     188     276 ..     173     284 .. 0.86
   3 !   35.5   0.1   2.2e-11   1.5e-09      44     232 ..     713     893 ..     707     910 .. 0.80

  Alignments for each domain:
  == domain 1    score: 15.1 bits;  conditional E-value: 3.7e-05
   TIGR02769  26 vldnvslsleeGetvallGrsGaGkstlarlllGlekPakGev 68 
                  l n+++ + +G+   +lG+ G+Gks l +lllG  + ++G++
  MMETSP1137-20121227|1778_1  97 ALRNINMRMPRGKLTFVLGEVGSGKSSLLQLLLGEMRANRGHM 139
                 589*******************************999999986 PP

  == domain 2    score: 35.2 bits;  conditional E-value: 2.7e-11
   TIGR02769 155 qlqriniaralavePklivldeavsnldlvlqasilel.lkklk.qefGlaylfithdlrlvqkfaqrvlvldeGqiveeikvaellsf 241
                 q  ri++aral  +P l +ld+ +s +d +   ++++  +  l       ++++++h l+  +++a+ v++++ G++v + +  el s+
  MMETSP1137-20121227|1778_1 188 QKARISMARALYGKPSLFLLDDPLSAVDAHVSRHLVDFaISGLMlTTLRATVVLVSHQLQFTHELAASVVLMEAGRVVAQGDANELASM 276
                 778**************************999988875244454144556789***************************999988887 PP

  == domain 3    score: 35.5 bits;  conditional E-value: 2.2e-11
   TIGR02769  44 GrsGaGkstlarlllGlekPakGevsfrGqdlakldrkqrkafrrdvqlvfqdsisavnprksvreiigePlrhltsldeserkar.iaellelvelrsevldklPrqlsGGqlqriniaralavePklivldeavsnldlvlqasilellkklkqefGlaylfithdlrlvqkfaqrvlvldeGqivee 232
                 Gr+GaGks l+  l  l + a G+++  G+d++ l       +rr + ++ qd++    + +s    ig   +  + ld++ r    + +   +  l+++v++   ++ls G  q + +a al  + ++++ldea +++d    a+i + ++k  ++   ++l i+h l  v  + + v+v+ +G   e 
  MMETSP1137-20121227|1778_1 713 GRTGAGKSSLSVALFRLVELAAGSITIDGVDISSLGL---AMLRRAMTIIQQDAMLFAGTIRSNLDPIGT--HSDEALDAALRTVDfVRHAGGEATLDTNVAE-GGANLSAGTRQLLGVAGALLRHSRIVMLDEATASIDFTTDATIQRVVRKSFDA--ATILTIAHRLDTVIDY-DDVIVMSHGVAAEC 893
                 89*******************************9965...57899********98765544444444443..3345678777664415566677778777665.6799***************************************9998865443..45688*******9997.67999999977665 PP

>> TIGR02314  ABC_MetN: D-methionine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.7   0.0   0.00014      0.01      17      51 ..      94     128 ..      88     145 .. 0.81
   2 !   27.6   0.0   4.2e-09   2.9e-07     145     232 ..     188     277 ..     184     317 .. 0.86
   3 !   36.9   0.3   6.2e-12   4.3e-10      38     228 ..     713     899 ..     706     919 .. 0.78

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 0.00014
   TIGR02314  17 kikaldnvslfvpkgqifgvigasgagkstlircv 51 
                 ++ al n+++ +p+g++  v+g  g+gks+l++ +
  MMETSP1137-20121227|1778_1  94 DVFALRNINMRMPRGKLTFVLGEVGSGKSSLLQLL 128
                 5789***************************9865 PP

  == domain 2    score: 27.6 bits;  conditional E-value: 4.2e-09
   TIGR02314 145 qkqrvaiaralasepkvllcdeatsaldpattqsilellke..inrrlgltillithemdvvkricdevavidkgeliekgtvseifshp 232
                 qk r+++aral  +p ++l d+  sa+d   ++ ++++     +  +l  t++l++h+++  +++  +v +++ g+++ +g  +e+ s  
  MMETSP1137-20121227|1778_1 188 QKARISMARALYGKPSLFLLDDPLSAVDAHVSRHLVDFAISglMLTTLRATVVLVSHQLQFTHELAASVVLMEAGRVVAQGDANELASMG 277
                 9*********************************9987543226789**********************************999987754 PP

  == domain 3    score: 36.9 bits;  conditional E-value: 6.2e-12
   TIGR02314  38 gasgagkstlircvnllekptsgavivdgkdlttlsnaelvkarrqigmifqhfnllssrtvfgnvalplelentpkekikrkvtellalvg....lsdkkdsypsnlsggqkqrvaiaralasepkvllcdeatsaldpattqsilellkeinrrlgltillithemdvvkricdevavidkgeliekgtvsei 228
                 g +gagks+l   +  l + + g++ +dg+d+++l    l+  rr + +i q   +l + t+  n+  p+  ++    +   +  +++   g    l        +nls g +q + +a al  + ++++ deat+++d +t  +i  ++++     + til i+h +d v    d v v+++g   e g+ +++
  MMETSP1137-20121227|1778_1 713 GRTGAGKSSLSVALFRLVELAAGSITIDGVDISSLG---LAMLRRAMTIIQQD-AMLFAGTIRSNLD-PIGTHSDEALDAALRTVDFVRHAGgeatLDTNVAEGGANLSAGTRQLLGVAGALLRHSRIVMLDEATASIDFTTDATIQRVVRKSF--DAATILTIAHRLDTVIDY-DDVIVMSHGVAAECGAPAQL 899
                 679*******99998899999**********99986...66779999877666.5667789999986.66555544444444445555555512224444455679************************************999999887644..3579*********99875.77899999988887776665 PP

>> TIGR03269  met_CoM_red_A2: methyl coenzyme M reductase system, component A2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.9   0.0   0.00018     0.013      12      49 ..      94     131 ..      90     144 .. 0.89
   2 !   27.2   0.0   4.2e-09   2.9e-07     173     256 ..     188     273 ..     171     289 .. 0.60
   3 !   35.0   0.1   1.9e-11   1.3e-09     317     517 ..     713     901 ..     685     905 .. 0.89

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 0.00018
   TIGR03269  12 glevlknisleleeGevlGilGksGaGksvllhllrGl 49 
                 ++ +l+ni++++  G++  +lG+ G+Gks ll+ll G 
  MMETSP1137-20121227|1778_1  94 DVFALRNINMRMPRGKLTFVLGEVGSGKSSLLQLLLGE 131
                 6778******************************9884 PP

  == domain 2    score: 27.2 bits;  conditional E-value: 4.2e-09
   TIGR03269 173 ekqrvvlarqlakeplllladeptGtldpkta.klvhealkeav.keedislvltshwpeviedlsdkaillekGeiveeGepeev 256
                 +k r+ +ar l  +p l+l d+p  ++d + + +lv  a+   +      ++vl sh  +  ++l+   +l+e G +v +G+++e+
  MMETSP1137-20121227|1778_1 188 QKARISMARALYGKPSLFLLDDPLSAVDAHVSrHLVDFAISGLMlTTLRATVVLVSHQLQFTHELAASVVLMEAGRVVAQGDANEL 273
                 45666666666666666666666666666544135555555443123345566666666666666666666666666666666554 PP

  == domain 3    score: 35.0 bits;  conditional E-value: 1.9e-11
   TIGR03269 317 GtsGaGkttlskilaGvleptsGevevrvGdewvdmtkkgvlerGrakkyiGllhqeyalyphrtvlenlteaiglelpdel.akrkavivlkavGfdeekakeildklpdelseGerhrvalaqvlikeprivildeptGtmdpitkvkvaesilkareeleetfvivshdmdfvlevcdraalmrdGkivkiGdpeeive 517
                 G +GaGk++ls  l  ++e ++G +++    + vd++  g+       + + ++ q+  l++  t+  nl + ig +  + l a  ++v  ++ +G +    +++ +    +ls G r  + +a  l++  riv+lde t ++d  t  ++++ + k+ +    t + ++h +d v +  d + +m +G   + G p+++++
  MMETSP1137-20121227|1778_1 713 GRTGAGKSSLSVALFRLVELAAGSITI----DGVDISSLGLAMLR---RAMTIIQQDAMLFA-GTIRSNL-DPIGTHSDEALdAALRTVDFVRHAGGEATLDTNVAEG-GANLSAGTRQLLGVAGALLRHSRIVMLDEATASIDFTTDATIQRVVRKSFD--AATILTIAHRLDTVIDY-DDVIVMSHGVAAECGAPAQLLR 901
                 789********************9887....789**999976655...55889999999997.5889998.78999988888577899999*****999998888775.679****************************************99988876..47999**********96.66889***********999886 PP

>> TIGR01187  potA: polyamine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   0.1     0.012      0.86       1      30 [.     113     142 ..     113     152 .. 0.92
   2 !   37.2   0.1   5.4e-12   3.8e-10     105     188 ..     188     273 ..     181     280 .. 0.91
   3 !   33.5   0.2     7e-11   4.8e-09       3     198 ..     713     909 ..     712     952 .. 0.82

  Alignments for each domain:
  == domain 1    score: 6.4 bits;  conditional E-value: 0.012
   TIGR01187   1 lLGpsGsGkttlLrllaGleeldsGkilld 30 
                 +LG  GsGk+ lL+ll G  + + G++ +d
  MMETSP1137-20121227|1778_1 113 VLGEVGSGKSSLLQLLLGEMRANRGHMAVD 142
                 69***********************99887 PP

  == domain 2    score: 37.2 bits;  conditional E-value: 5.4e-12
   TIGR01187 105 qrqrvalaravvkkPkiLLlDeplsaLDkkL.rdqmqlelka.lqeklGitvvlvthDqeealtmsdriavlrkGkiaqigepeei 188
                 q+ r+++ara+  kP ++LlD+plsa+D ++ r+ +   +   +   l  tvvlv h  +    ++  +++++ G+++  g+++e+
  MMETSP1137-20121227|1778_1 188 QKARISMARALYGKPSLFLLDDPLSAVDAHVsRHLVDFAISGlMLTTLRATVVLVSHQLQFTHELAASVVLMEAGRVVAQGDANEL 273
                 999*************************9985777888887526799*******************************99999987 PP

  == domain 3    score: 33.5 bits;  conditional E-value: 7e-11
   TIGR01187   3 GpsGsGkttlLrllaGleeldsGkilldgedvtevp.aekrsvnvvfqsyaLfPhmtveenva.fgLkmrkvpkaeik..ervkeaLelvqleefakrkpsqlsGGqrqrvalaravvkkPkiLLlDeplsaLDkkLrdqmqlelkalqeklGitvvlvthDqeealtmsdriavlrkGkiaqigepeeiyeePanefva 198
                 G +G+Gk+ l   l  l el +G+i +dg+d+++   a +r   ++ q+ a+    t+  n+   g + ++   a ++  + v++a     l++  +    +ls G rq + +a a+  + +i++lDe+ +++D      +q  +++  +    t++ ++h  +  +   d + v+++G  a  g p ++  +  ++f+a
  MMETSP1137-20121227|1778_1 713 GRTGAGKSSLSVALFRLVELAAGSITIDGVDISSLGlAMLRRAMTIIQQDAMLFAGTIRSNLDpIGTHSDEALDAALRtvDFVRHAGGEATLDTNVAEGGANLSAGTRQLLGVAGALLRHSRIVMLDEATASIDFTTDATIQRVVRKSFDA--ATILTIAHRLDTVIDY-DDVIVMSHGVAAECGAPAQLLRNEGSLFSA 909
                 779*****************************987536777777788888877789*****96245555544333322114577788889999999999*******************************************988876664..4666677877666665.56779***************9999999998 PP

>> TIGR02770  nickel_nikD: nickel import ATP-binding protein NikD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.1   0.0    0.0024      0.16       3      49 ..      99     141 ..      97     145 .. 0.79
   2 !   29.7   0.1   1.2e-09   8.5e-08     133     213 ..     191     273 ..     187     281 .. 0.87
   3 !   37.5   0.3   4.9e-12   3.4e-10      19     216 ..     713     902 ..     710     911 .. 0.74

  Alignments for each domain:
  == domain 1    score: 9.1 bits;  conditional E-value: 0.0024
   TIGR02770   3 qdvnlslkrgkvlalvGesGsGksltalailglldkeltktsGeill 49 
                 +++n+ + rgk++ ++Ge GsGks    ++l+ll  e+++ +G++++
  MMETSP1137-20121227|1778_1  99 RNINMRMPRGKLTFVLGEVGSGKS----SLLQLLLGEMRANRGHMAV 141
                 689********************9....4566666666666666655 PP

  == domain 2    score: 29.7 bits;  conditional E-value: 1.2e-09
   TIGR02770 133 RvmialallleaplliaDePttdlDvvvqaevLkl.lee.lrekrglgillithDlgvvaeladevavmekGkivergtvkel 213
                 R+ +a al  +++l++ D+P +++D+ v  ++++  ++  +  +   +++l++h l+   ela  v++me+G++v +g+++el
  MMETSP1137-20121227|1778_1 191 RISMARALYGKPSLFLLDDPLSAVDAHVSRHLVDFaISGlMLTTLRATVVLVSHQLQFTHELAASVVLMEAGRVVAQGDANEL 273
                 7888999999******************999998525552456667889*****************************99887 PP

  == domain 3    score: 37.5 bits;  conditional E-value: 4.9e-12
   TIGR02770  19 GesGsGksltalailglldkeltktsGeilldgkelaal..alrgreialilqnPrsafnPlltikeqlletlkaleklskqakelivealeavgLeea.eevlkkypfelsGGmlqRvmialallleaplliaDePttdlDvvvqaevLklleelrekrglgillithDlgvvaeladevavmekGkivergtvkelfqe 216
                 G  G+Gks  ++a+  l +     ++G+i++dg ++++l  a+  r++++i q+ +  f    ti+++l + + +++  + +a  + v+ ++++g e + ++ + +   +ls G  q + +a all ++ +++ De t+ +D ++ a++ + +++  + ++ +il i+h l  v    d+v+vm++G   e+g + +l+ +
  MMETSP1137-20121227|1778_1 713 GRTGAGKSSLSVALFRLVE----LAAGSITIDGVDISSLglAMLRRAMTIIQQDAM-LFA--GTIRSNL-DPIGTHSDEALDAALRTVDFVRHAGGEATlDTNVAEGGANLSAGTRQLLGVAGALLRHSRIVMLDEATASIDFTTDATIQRVVRK--SFDAATILTIAHRLDTVIDY-DDVIVMSHGVAAECGAPAQLLRN 902
                 789************9998....789***********9965555666666666655.443..2343332.3333333333333333444444443332212344556789***************************************988875..445678999*****999886.89*************99999876 PP

>> TIGR03258  PhnT: 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.5   0.0    0.0014       0.1      24      68 ..      98     142 ..      91     153 .. 0.90
   2 !   41.2   0.4   3.1e-13   2.2e-11     143     227 ..     188     273 ..     180     280 .. 0.92
   3 !   28.0   1.1   3.4e-09   2.4e-07      41     237 ..     713     909 ..     703     921 .. 0.84

  Alignments for each domain:
  == domain 1    score: 9.5 bits;  conditional E-value: 0.0014
   TIGR03258  24 lddlsleieaGellallGksGsGkttllravaGfvkadGGrllva 68 
                 l ++ + +  G+l  +lG+ GsGk++ll+++ G ++a+ G+++v 
  MMETSP1137-20121227|1778_1  98 LRNINMRMPRGKLTFVLGEVGSGKSSLLQLLLGEMRANRGHMAVD 142
                 6788889999******************************99984 PP

  == domain 2    score: 41.2 bits;  conditional E-value: 3.1e-13
   TIGR03258 143 qqqrvalaralvvrpdvllldeplsaldaql.rasvveelkalhrelpeltvlyvthdrdealvladkillmkeGslialGetral 227
                 q+ r+++aral  +p ++lld+plsa+da++ r+ v   +  l       tv+ v+h+ + +  la  + lm  G+++a+G++++l
  MMETSP1137-20121227|1778_1 188 QKARISMARALYGKPSLFLLDDPLSAVDAHVsRHLVDFAISGLMLTTLRATVVLVSHQLQFTHELAASVVLMEAGRVVAQGDANEL 273
                 678***************************945666678999*999999********************************99887 PP

  == domain 3    score: 28.0 bits;  conditional E-value: 3.4e-09
   TIGR03258  41 GksGsGkttllravaGfvkadGGrllvadrdlthl..ppykrnlallvqnyalfphlkveenv.afGlrarkqskalia..ervadalklvqlsdaaarlpaqlsGGqqqrvalaralvvrpdvllldeplsaldaqlrasvveelkalhrelpeltvlyvthdrdealvladkillmkeGslialGetralydapadrfva 237
                 G++G+Gk++l  a+  +v+ + G + + + d++ l     +r+++++ q+  lf   ++  n+   G  +    +a +   + v +a     l    a+  a+ls G +q + +a al  + ++++lde  +++d    a+++  ++   + +   t+l ++h   ++++  d + +m +G  ++ G + +l  +    f a
  MMETSP1137-20121227|1778_1 713 GRTGAGKSSLSVALFRLVELAAGSITIDGVDISSLglAMLRRAMTIIQQDAMLFAG-TIRSNLdPIGTHSDEALDAALRtvDFVRHAGGEATLDTNVAEGGANLSAGTRQLLGVAGALLRHSRIVMLDEATASIDFTTDATIQRVVR---KSFDAATILTIAHR-LDTVIDYDDVIVMSHGVAAECGAPAQLLRNEGSLFSA 909
                 899*****************************986225678999998888888876.66666526899988877776541256788888899999999************************************9999888876554...56778899999995.66777789999***************99887776665 PP

>> TIGR03005  ectoine_ehuA: ectoine/hydroxyectoine ABC transporter, ATP-binding protein EhuA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.6   0.0    0.0015       0.1      15      60 ..      97     142 ..      92     153 .. 0.91
   2 !   39.3   0.1   1.3e-12   8.9e-11     151     234 ..     188     273 ..     183     280 .. 0.89
   3 !   23.9   0.4   6.5e-08   4.5e-06     111     237 ..     775     902 ..     695     905 .. 0.71

  Alignments for each domain:
  == domain 1    score: 9.6 bits;  conditional E-value: 0.0015
   TIGR03005  15 vldglelevaaGekvaliGpsGsGkstilrilmtletideGsikve 60 
                  l ++++ + +G+   ++G  GsGks++l++l+   + + G++ v+
  MMETSP1137-20121227|1778_1  97 ALRNINMRMPRGKLTFVLGEVGSGKSSLLQLLLGEMRANRGHMAVD 142
                 6788999999************************999999999997 PP

  == domain 2    score: 39.3 bits;  conditional E-value: 1.3e-12
   TIGR03005 151 qkqrvaiaralalrpkvllfdevtsaldpelveevlnv.lrrla.setdltmllvthemgfarefadrvlffdkGkiveeGkpdei 234
                 qk r+++aral  +p ++l+d++ sa+d ++   +++  +  l  +    t++lv+h+++f++e+a  v++++ G++v +G  +e+
  MMETSP1137-20121227|1778_1 188 QKARISMARALYGKPSLFLLDDPLSAVDAHVSRHLVDFaISGLMlTTLRATVVLVSHQLQFTHELAASVVLMEAGRVVAQGDANEL 273
                 99****************************99998875255555145578*******************************99987 PP

  == domain 3    score: 23.9 bits;  conditional E-value: 6.5e-08
   TIGR03005 111 apvlvkGvaraeaekravelldmvG....ladkadalpaqlsGGqkqrvaiaralalrpkvllfdevtsaldpelveevlnvlrrlasetdltmllvthemgfarefadrvlffdkGkiveeGkpdeifrk 237
                  p+ ++  +  +a  r+v+++   G    l     +  a+ls G +q + +a al  + +++++de+t+++d      +  v+r+       t+l ++h++    ++ d v+ + +G  +e G+p +++r+
  MMETSP1137-20121227|1778_1 775 DPIGTHSDEALDAALRTVDFVRHAGgeatLDTNVAEGGANLSAGTRQLLGVAGALLRHSRIVMLDEATASIDFTTDATIQRVVRKSF--DAATILTIAHRLDTVIDYDD-VIVMSHGVAAECGAPAQLLRN 902
                 4555555555555556666655555111122333445689***********************************99999***9854..56799************966.78899************9986 PP

>> TIGR01166  cbiO: cobalt ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.3   0.1   1.3e-08   9.2e-07       5      52 ..      95     142 ..      92     185 .. 0.82
   2 !   12.2   0.0   0.00029      0.02     131     187 ..     187     246 ..     173     249 .. 0.81
   3 !   37.7   0.4   4.4e-12     3e-10      25     182 ..     713     869 ..     695     876 .. 0.83

  Alignments for each domain:
  == domain 1    score: 26.3 bits;  conditional E-value: 1.3e-08
   TIGR01166   5 aevlkglnlavergevlallGanGaGkstlllhlnGllrPksGkvlld 52 
                 + +l+++n+++ rg+ + +lG+ G+Gks ll+ l G +r + G++ +d
  MMETSP1137-20121227|1778_1  95 VFALRNINMRMPRGKLTFVLGEVGSGKSSLLQLLLGEMRANRGHMAVD 142
                 5589***************************************98876 PP

  == domain 2    score: 12.2 bits;  conditional E-value: 0.00029
   TIGR01166 131 GekkrvaiagavalrpdvllldePtagldpaGaeqlle.ilrkl..reeGktvvisthdv 187
                  +k r+++a a+  +p ++lld+P + +d++  ++l++ ++++l  +    tvv+ +h +
  MMETSP1137-20121227|1778_1 187 XQKARISMARALYGKPSLFLLDDPLSAVDAHVSRHLVDfAISGLmlTTLRATVVLVSHQL 246
                 599****************************99999873466651155567888888876 PP

  == domain 3    score: 37.7 bits;  conditional E-value: 4.4e-12
   TIGR01166  25 GanGaGkstlllhlnGllrPksGkvlldGeeldysrkgllelrkkvalvlqdpddqlfaadvdedva.fgplnlGlseaeve..rrvrealaavdisgleerpthllsgGekkrvaiagavalrpdvllldePtagldpaGaeqlleilrklreeGktvvi 182
                 G+ GaGks l   l  l+   +G +++dG   d s  gl  lr+ ++++ qd+   lfa ++ +++   g       +a ++    vr+a     ++         ls G ++ + +aga+  ++++++lde ta++d +    + +++rk  ++ + + i
  MMETSP1137-20121227|1778_1 713 GRTGAGKSSLSVALFRLVELAAGSITIDGV--DISSLGLAMLRRAMTIIQQDA--MLFAGTIRSNLDpIGTHSDEALDAALRtvDFVRHAGGEATLDTNVAEGGANLSAGTRQLLGVAGALLRHSRIVMLDEATASIDFTTDATIQRVVRKSFDAATILTI 869
                 899**************************5..66899*******999998875..8*******987524444444444444411458888888888888888899********************************************998877655544 PP

>> TIGR02982  heterocyst_DevA: ABC exporter ATP-binding subunit, DevA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.3   0.0    0.0006     0.042      21      63 ..      98     140 ..      89     144 .. 0.86
   2 !   31.7   0.1   3.3e-10   2.3e-08     145     219 ..     187     264 ..     175     265 .. 0.86
   3 !   32.8   0.9   1.6e-10   1.1e-08      38     214 ..     713     885 ..     705     890 .. 0.77

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 0.0006
   TIGR02982  21 lfdinleiepgeiviltGpsGsGkttlltligglrsvqeGelk 63 
                 l +in+++  g +  + G+ GsGk  ll l+ g  ++  G++ 
  MMETSP1137-20121227|1778_1  98 LRNINMRMPRGKLTFVLGEVGSGKSSLLQLLLGEMRANRGHMA 140
                 889*************************998666666777766 PP

  == domain 2    score: 31.7 bits;  conditional E-value: 3.3e-10
   TIGR02982 145 GqkqrvaiaralvarPklvladePtaaldkksgrevvellqk..lareqgttillvthdnri.ldvadrivkmedGkl 219
                  qk r+++aral  +P+l l d+P +a+d++ +r++v+      +     +t++lv h  +   ++a  +v me G++
  MMETSP1137-20121227|1778_1 187 XQKARISMARALYGKPSLFLLDDPLSAVDAHVSRHLVDFAISglMLTTLRATVVLVSHQLQFtHELAASVVLMEAGRV 264
                 59***********************************975431134566799******9886268***********97 PP

  == domain 3    score: 32.8 bits;  conditional E-value: 1.6e-10
   TIGR02982  38 GpsGsGkttlltligglrsvqeGelkvlgkelkgasekelvqvrrkiGyifqahnllesltaeqnvr.malelkeklsakeak.akaeelleavgleerldykpedlsgGqkqrvaiaralvarPklvladePtaaldkksgrevvellqklareqgttillvthd.nrildvadrivkm 214
                 G +G+Gk  l   +  l ++  G++++ g +++ +    l  +rr + +i q   l+ + t + n+  ++++  e+l a+ ++ + +++   +  l+ ++    ++ls G +q + +a al  + ++v+ de ta++d ++  ++  +++k     ++til ++h  + ++d  d i  m
  MMETSP1137-20121227|1778_1 713 GRTGAGKSSLSVALFRLVELAAGSITIDGVDISSL---GLAMLRRAMTIIQQDAMLF-AGTIRSNLDpIGTHSDEALDAALRTvDFVRHAGGEATLDTNVAEGGANLSAGTRQLLGVAGALLRHSRIVMLDEATASIDFTTDATIQRVVRKSF--DAATILTIAHRlDTVIDYDDVI-VM 885
                 899*******999999***********99988765...6888999998887776666.56899998735555555544433330234444455667778888899**************************************9999999865..5788999999623455655544.45 PP

>> TIGR03411  urea_trans_UrtD: urea ABC transporter, ATP-binding protein UrtD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.0   1.9e-06   0.00013      16      61 ..      96     141 ..      91     145 .. 0.93
   2 !   25.9   0.1   2.2e-08   1.5e-06     148     229 ..     188     273 ..     185     278 .. 0.82
   3 !   25.2   0.1   3.6e-08   2.5e-06      35     221 ..     713     891 ..     695     905 .. 0.84

  Alignments for each domain:
  == domain 1    score: 19.5 bits;  conditional E-value: 1.9e-06
   TIGR03411  16 kalndlslsveegelrviiGpnGaGkttllDvitGktrpdeGsvlf 61 
                  al+++++++ +g+l +++G  G+Gk+ ll ++ G +r+++G++ +
  MMETSP1137-20121227|1778_1  96 FALRNINMRMPRGKLTFVLGEVGSGKSSLLQLLLGEMRANRGHMAV 141
                 69****************************************9876 PP

  == domain 2    score: 25.9 bits;  conditional E-value: 2.2e-08
   TIGR03411 148 qkqwLeigmllvqepkllllDePvaGmtdeetektael....lkelakersvvvvehDmefvrelaekvtvlheGkvlaeGsldev 229
                 qk ++ ++  l  +p+l+llD+P + + ++  ++  ++    l   + + +vv+v h ++f +ela++v  ++ G+v+a+G+ +e+
  MMETSP1137-20121227|1778_1 188 QKARISMARALYGKPSLFLLDDPLSAVDAHVSRHLVDFaisgLMLTTLRATVVLVSHQLQFTHELAASVVLMEAGRVVAQGDANEL 273
                 77778888899*************9998887777666521213333456899*****************************98876 PP

  == domain 3    score: 25.2 bits;  conditional E-value: 3.6e-08
   TIGR03411  35 GpnGaGkttllDvitGktrpdeGsvlfkgkdltklkeaeiarlGigRkfqkpsvfeeltvlenle.lalkadksvlallfarlskeekerieevleligLeekadkkaglLshGqkqwLeigmllvqepkllllDePvaGmtdeetektaellkelakersvvvvehDmefvrelaekvtvlheGkvl 221
                 G  GaGk+ l  ++   ++ ++Gs++++g d+++l  a + r  ++   q+ +++   t++ nl+ + +++d+ + a+l      ++ + ++++    +L++++ +  ++Ls G +q L ++  l++++++++lDe +a +  +  +++ +++++  +  +++ + h ++ v ++++ v v+++G   
  MMETSP1137-20121227|1778_1 713 GRTGAGKSSLSVALFRLVELAAGSITIDGVDISSLGLAMLRR-AMTII-QQDAMLFAGTIRSNLDpIGTHSDEALDAAL------RTVDFVRHAGGEATLDTNVAEGGANLSAGTRQLLGVAGALLRHSRIVMLDEATASIDFTTDATIQRVVRKSFDAATILTIAHRLDTVIDYDD-VIVMSHGVAA 891
                 678999999999999999999999999999999998776655.44444.555555567999999856677777766666......44567888889999*************************************************************************99975.7788888655 PP

>> TIGR03771  anch_rpt_ABC: anchored repeat-type ABC transporter, ATP-binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.1   1.1e-05   0.00074       2      86 ..     104     180 ..     103     187 .. 0.82
   2 !   33.6   0.3   9.7e-11   6.7e-09     109     200 ..     179     274 ..     167     279 .. 0.87
   3 !   25.0   1.6   4.2e-08   2.9e-06      13     201 ..     713     901 ..     710     915 .. 0.71

  Alignments for each domain:
  == domain 1    score: 17.1 bits;  conditional E-value: 1.1e-05
   TIGR03771   2 svdkGellgllGpnGaGkttllrailglikvakGsvkvagkssrkgrreiGyvpqrhefawdfpidveqtvlsGragliGllrrp 86 
                 ++ +G+l  +lG  G+Gk++ll+ +lg +++++G++ v+      g   +Gyvpq    aw     +++ v+  r     ++ r 
  MMETSP1137-20121227|1778_1 104 RMPRGKLTFVLGEVGSGKSSLLQLLLGEMRANRGHMAVDR-----GAGPVGYVPQG---AWVLNATLRENVVLSRPFDAEWYNRV 180
                 567999******************************9997.....7888*****96...77777777777777776666666665 PP

  == domain 2    score: 33.6 bits;  conditional E-value: 9.7e-11
   TIGR03771 109 rpvGelsGGqrqrvlvaralavkpslllldepftGldlpsqellvelfee...lagegtailmtthdlaeavatcdrvvlln.grvvadgapdqlq 200
                 r v +    q+ r+ +aral  kpsl+lld+p++ +d     +lv++ ++   l++   ++++++h+l  + + +  vvl++ grvva+g  ++l 
  MMETSP1137-20121227|1778_1 179 RVVERDLVXQKARISMARALYGKPSLFLLDDPLSAVDAHVSRHLVDFAISglmLTTLRATVVLVSHQLQFTHELAASVVLMEaGRVVAQGDANELA 274
                 55555556799***********************************9875444889999**************99999999648******998885 PP

  == domain 3    score: 25.0 bits;  conditional E-value: 4.2e-08
   TIGR03771  13 GpnGaGkttllrailglikvakGsvkvagkssrkgrreiGyvpqrhefawdfpidveqtvlsGragl....iGllrrpkkadfaa....vadalervklteladrpvGelsGGqrqrvlvaralavkpslllldepftGldlpsqellvelfeelagegtailmtthdlaeavatcdrvvllngrvvadgapdqlqd 201
                 G  GaGk++l  a++ l++ a+Gs+ ++g       + +G    r  ++    i+   ++++G  +     iG       +        v++a  +++l         +ls G rq + va al  + ++++lde  + +d+ +  ++  ++++ + +  +il  +h l   ++  d +v+  g     gap+ql  
  MMETSP1137-20121227|1778_1 713 GRTGAGKSSLSVALFRLVELAAGSITIDGV----DISSLGLAMLRRAMTI---IQQDAMLFAGTIRSnldpIGTHSDEALDAALRtvdfVRHAGGEATLDTNVAEGGANLSAGTRQLLGVAGALLRHSRIVMLDEATASIDFTTDATIQRVVRK-SFDAATILTIAHRLDTVIDYDDVIVMSHGVAAECGAPAQLLR 901
                 667999999999999999999999999995....5667788777777664...44444444443332111155444333322221011134444455554444445568*********************************999999888765.778899********9999988777777666666799**9975 PP

>> TIGR03415  ABC_choXWV_ATP: choline ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.1   5.5e-05    0.0039      35      91 ..      93     149 ..      85     169 .. 0.88
   2 !   39.3   0.0   1.2e-12   8.2e-11     156     252 ..     175     273 ..     172     279 .. 0.89
   3 !   18.1   0.3   3.2e-06   0.00022      57     256 ..     713     903 ..     707     941 .. 0.78

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 5.5e-05
   TIGR03415  35 GlvlgvadasldveeGeilvlmGlsGsGkssllravnglnpvsrGkvlvkdedkevd 91 
                  +v + +++++++ +G ++ ++G  GsGkssll+ + g     rG++ v  + + v 
  MMETSP1137-20121227|1778_1  93 SDVFALRNINMRMPRGKLTFVLGEVGSGKSSLLQLLLGEMRANRGHMAVDRGAGPVG 149
                 5788999******************************************99888775 PP

  == domain 2    score: 39.3 bits;  conditional E-value: 1.2e-12
   TIGR03415 156 eWadkkvgelsGGmqqrvGlarafateadillmdePfsaldPliraklqdelle..lqkklkktivfvshdldealklGnriaimegGrivqlgtpeei 252
                 eW ++ v+      + r+ +ara+  +  ++l+d+P+sa+d  +  +l d  ++  + ++l+ t+v+vsh l+    l + + +me Gr+v +g ++e+
  MMETSP1137-20121227|1778_1 175 EWYNRVVERDLVXQKARISMARALYGKPSLFLLDDPLSAVDAHVSRHLVDFAISglMLTTLRATVVLVSHQLQFTHELAASVVLMEAGRVVAQGDANEL 273
                 6777766665566678**********************************9986556799********************************9999886 PP

  == domain 3    score: 18.1 bits;  conditional E-value: 3.2e-06
   TIGR03415  57 GlsGsGkssllravnglnpvsrGkvlvkdedkevdvakcdeatlrklrtkrvsmvfqkfallPWrtveenvafGlelsGvakaerrkrveeqlelv.......glaeWadkkvgelsGGmqqrvGlarafateadillmdePfsaldPliraklqdellelqkklkktivfvshdldealklGnriaimegGrivqlgtpeeivlkP 256
                 G +G+Gkssl  a+ +l  ++ G++++      vd+ ++  a lr+        + q+ a+l   t++ n+    +  G   +e  + + + +++v        l+    +   +ls G +q +G+a a+  ++ i+++de  +++d    a +q  + +  +    ti+ ++h ld  +   + + +m  G    +g+p +++++ 
  MMETSP1137-20121227|1778_1 713 GRTGAGKSSLSVALFRLVELAAGSITID----GVDISSLGLAMLRR-----AMTIIQQDAMLFAGTIRSNL----DPIGTHSDEALDAALRTVDFVrhaggeaTLDTNVAEGGANLSAGTRQLLGVAGALLRHSRIVMLDEATASIDFTTDATIQRVVRK--SFDAATILTIAHRLDTVIDYDD-VIVMSHGVAAECGAPAQLLRNE 903
                 7789999999999999999999999885....36666666555553.....23467999999999999995....5566666666666666666662221111344444555567*************************************99975533..33468************99865.6689************999875 PP

>> TIGR03608  L_ocin_972_ABC: putative bacteriocin export ABC transporter, lactococcin 972 group
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.0   9.3e-06   0.00065      13      55 ..      97     139 ..      91     145 .. 0.84
   2 !   12.5   0.0   0.00023     0.016     139     199 ..     188     251 ..     185     258 .. 0.83
   3 !   35.4   0.0   2.3e-11   1.6e-09      31     204 ..     713     883 ..     704     885 .. 0.82

  Alignments for each domain:
  == domain 1    score: 17.1 bits;  conditional E-value: 9.3e-06
   TIGR03608  13 ilkklslkiekGelvaivGesGsGKstlLnilgllekkdsgkv 55 
                  l+++++++ +G+l+ ++Ge GsGKs lL +l    + ++g++
  MMETSP1137-20121227|1778_1  97 ALRNINMRMPRGKLTFVLGEVGSGKSSLLQLLLGEMRANRGHM 139
                 689**************************99866666666665 PP

  == domain 2    score: 12.5 bits;  conditional E-value: 0.00023
   TIGR03608 139 ekqRvalarillkeselilADEPtgsLDkknreevlellke...lkeegktiiivtHdpevaek 199
                 +k R+++ar+l  +++l l D+P +++D++ + +++++  +   l+    t+++v H+ + +++
  MMETSP1137-20121227|1778_1 188 QKARISMARALYGKPSLFLLDDPLSAVDAHVSRHLVDFAISglmLTTLRATVVLVSHQLQFTHE 251
                 688******************************9999864322267778899999999887655 PP

  == domain 3    score: 35.4 bits;  conditional E-value: 2.3e-11
   TIGR03608  31 GesGsGKstlLnilgllekkdsgkvilegkekaklkskkaskllreklgylFqnfaLlenetveenlelalklkkkskkekekkkkevlekvglekklkkkiye....lsgGekqRvalarillkeselilADEPtgsLDkknreevlellkelkeegktiiivtHdpevaekadrvi 204
                 G+ G+GKs l   l +l +   g+++++g +     s+    +lr  ++ + q+  L    t+++nl+ ++ ++  +  +   ++++ +++ g e++l++++ e    ls G +q + +a +ll++s++++ DE t+s+D  + +++ +++++  ++  ti+ + H        d vi
  MMETSP1137-20121227|1778_1 713 GRTGAGKSSLSVALFRLVELAAGSITIDGVD----ISSLGLAMLRRAMTIIQQDAML-FAGTIRSNLD-PIGTHSDEALDAALRTVDFVRHAGGEATLDTNVAEgganLSAGTRQLLGVAGALLRHSRIVMLDEATASIDFTTDATIQRVVRKSFDAA-TILTIAHRLDTVIDYDDVI 883
                 899****************************....4567788899999988887655.578******9.567777777788888888888888888888777644444***********************************999999999887765.6667777766555555555 PP

>> TIGR02211  LolD_lipo_ex: lipoprotein releasing system, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.0   2.4e-06   0.00016      18      64 ..      95     141 ..      88     145 .. 0.89
   2 !   21.2   0.1   5.3e-07   3.7e-05     147     217 ..     189     262 ..     186     266 .. 0.81
   3 !   28.4   0.4   3.2e-09   2.2e-07      38     217 ..     713     888 ..     700     892 .. 0.83

  Alignments for each domain:
  == domain 1    score: 19.1 bits;  conditional E-value: 2.4e-06
   TIGR02211  18 ievlkgvsleiekgelvaivGssGsGkstllhllggldkptsGevll 64 
                 +  l+++++++ +g+l++++G+ GsGks ll ll g  ++  G++ +
  MMETSP1137-20121227|1778_1  95 VFALRNINMRMPRGKLTFVLGEVGSGKSSLLQLLLGEMRANRGHMAV 141
                 55799*****************************9988888888766 PP

  == domain 2    score: 21.2 bits;  conditional E-value: 5.3e-07
   TIGR02211 147 rqrvaiaralvnkPklvladePtgnldkktakkifellle..lnkekntallvvthdlelakkldrvle.lkdg 217
                 + r+++aral  kP+l l d+P + +d++ ++++ ++     + ++++ ++++v+h+l++ ++l   +  ++ g
  MMETSP1137-20121227|1778_1 189 KARISMARALYGKPSLFLLDDPLSAVDAHVSRHLVDFAISglMLTTLRATVVLVSHQLQFTHELAASVVlMEAG 262
                 6799****************************998764322266889999***********9987765514445 PP

  == domain 3    score: 28.4 bits;  conditional E-value: 3.2e-09
   TIGR02211  38 GssGsGkstllhllggldkptsGevllkGkelsklssneraklrnkklGfiyqfhhlladftalenvamPlliskkskkeakerakellekvg....lekrinkkpselsGGerqrvaiaralvnkPklvladePtgnldkktakkifelllelnkekntallvvthdlelakkldrvlelkdg 217
                 G +G+Gks l   l  l + ++G+++++G ++s+l     a lr   +  i q   +l   t+  n+  P+   + +  +a+ r+ +++++ g    l+  + +  ++ls G rq   +a al+ + ++v+ de t+ +d +t  +i +++++       ++l ++h l+ +   d v+ +++g
  MMETSP1137-20121227|1778_1 713 GRTGAGKSSLSVALFRLVELAAGSITIDGVDISSLG---LAMLRR-AMTII-QQDAMLFAGTIRSNLD-PIGTHSDEALDAALRTVDFVRHAGgeatLDTNVAEGGANLSAGTRQLLGVAGALLRHSRIVMLDEATASIDFTTDATIQRVVRKS--FDAATILTIAHRLDTVIDYDDVIVMSHG 888
                 889***************************998875...788885.56655.5567777789999986.999999999999999999998765222277777888899************************************9999998864..3445567778887777777777777666 PP

>> TIGR03740  galliderm_ABC: lantibiotic protection ABC transporter, ATP-binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.0     1e-05    0.0007      15      60 ..      97     142 ..      92     145 .. 0.94
   2 !   17.2   0.0   9.5e-06   0.00066     129     210 ..     188     272 ..     177     279 .. 0.88
   3 !   29.0   0.0   2.4e-09   1.7e-07      33     194 ..     713     883 ..     708     893 .. 0.75

  Alignments for each domain:
  == domain 1    score: 17.1 bits;  conditional E-value: 1e-05
   TIGR03740  15 vvnnvslkvkknsvygllGpnGaGkstllklltGllrktsGeilld 60 
                 ++ n+++++++ ++  +lG  G+Gks+ll+ll G +r + G++ +d
  MMETSP1137-20121227|1778_1  97 ALRNINMRMPRGKLTFVLGEVGSGKSSLLQLLLGEMRANRGHMAVD 142
                 689***************************************9987 PP

  == domain 2    score: 17.2 bits;  conditional E-value: 9.5e-06
   TIGR03740 129 mkqrlGiaiallnkPkllildePtnGldPlGiqelreliks...fpekGitvilsshilsevelladhiGiiseGklkyekkidk 210
                  k r+ +a al  kP l++ld+P   +d    ++l ++  s   +++   tv+l sh l   ++la  + +++ G++  ++  ++
  MMETSP1137-20121227|1778_1 188 QKARISMARALYGKPSLFLLDDPLSAVDAHVSRHLVDFAISglmLTTLRATVVLVSHQLQFTHELAASVVLMEAGRVVAQGDANE 272
                 589****************************9999998644333778889***************************99988776 PP

  == domain 3    score: 29.0 bits;  conditional E-value: 2.4e-09
   TIGR03740  33 GpnGaGkstllklltGllrktsGeilldgrewtr...kdlkkiGsliesPalyenltarenlk.vrtlllg.lpe..srieevlki...vdlentekkkakqfslGmkqrlGiaiallnkPkllildePtnGldPlGiqelrelik.sfpekGitvilsshilsevelladhi 194
                 G  GaGks+l   l  l++ ++G+i++dg +++     +l+   ++i++ a+    t r nl  + t   + l+    +++ v +      l+++      ++s G +q lG+a all++ ++++lde t  +d      ++++++ sf     t++  +h l  v    d i
  MMETSP1137-20121227|1778_1 713 GRTGAGKSSLSVALFRLVELAAGSITIDGVDISSlglAMLRRAMTIIQQDAMLFAGTIRSNLDpIGTHSDEaLDAalRTVDFVRHAggeATLDTNVAEGGANLSAGTRQLLGVAGALLRHSRIVMLDEATASIDFTTDATIQRVVRkSFD--AATILTIAHRLDTVIDYDDVI 883
                 778**************************998762336888999******************8344433321222113444444431113355555566679********************************9988888887761554..457777778887776666555 PP

>> TIGR01184  ntrCD: nitrate ABC transporter, ATP-binding proteins C and D
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.9   0.0   0.00076     0.053       1      44 [.      98     141 ..      98     151 .. 0.91
   2 !   26.0   0.2   1.9e-08   1.3e-06     120     198 ..     189     269 ..     181     276 .. 0.88
   3 !   29.9   0.3   1.2e-09   8.6e-08      18     197 ..     713     894 ..     710     900 .. 0.86

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 0.00076
   TIGR01184   1 lkdvdleikkgefislighsgcgkstllnliaglekptsgavil 44 
                 l+++++++ +g++  ++g  g gks+ll+l+ g  +   g + +
  MMETSP1137-20121227|1778_1  98 LRNINMRMPRGKLTFVLGEVGSGKSSLLQLLLGEMRANRGHMAV 141
                 679*****************************999998888766 PP

  == domain 2    score: 26.0 bits;  conditional E-value: 1.9e-08
   TIGR01184 120 kqrvaiaralsirpklllldepfgaldaltreelqekllk..iveearvtvlmvthdvdealllsdrvvmltngpaakige 198
                 k r+++aral  +p l+lld+p+ a+da    +l +  +   ++   r+tv++v+h+++ +  l+  vv++ +g     g+
  MMETSP1137-20121227|1778_1 189 KARISMARALYGKPSLFLLDDPLSAVDAHVSRHLVDFAISglMLTTLRATVVLVSHQLQFTHELAASVVLMEAGRVVAQGD 269
                 89**************************99999999877633567899***********************9998766665 PP

  == domain 3    score: 29.9 bits;  conditional E-value: 1.2e-09
   TIGR01184  18 ghsgcgkstllnliaglekptsgavilegkeitepgpd....rmvvfqnysllpwltvrenialavdavlrdlskserr.eiveehielvglreaadkrpeqlsggmkqrvaiaralsirpklllldepfgaldaltreelqekllkiveearvtvlmvthdvdealllsdrvvmltngpaakig 197
                 g +g gks+l   +  l + ++g+++++g +i+  g       m ++q+ ++l   t+r n+     +  + l+ + r  + v++     +l +      ++ls g +q + +a al    ++++lde   ++d  t   +q  + k ++   +t+l ++h +d  +   d v++++ g aa+ g
  MMETSP1137-20121227|1778_1 713 GRTGAGKSSLSVALFRLVELAAGSITIDGVDISSLGLAmlrrAMTIIQQDAMLFAGTIRSNLDPIGTHSDEALDAALRTvDFVRHAGGEATLDTNVAEGGANLSAGTRQLLGVAGALLRHSRIVMLDEATASIDFTTDATIQRVVRKSFD--AATILTIAHRLDTVIDYDD-VIVMSHGVAAECG 894
                 789********9999*******************99642222599****************998777777777666554278999999999*9999999**************************************9999987777665..56999*******8776655.6666889888877 PP

>> TIGR01189  ccmA: heme ABC exporter, ATP-binding protein CcmA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.1   5.4e-06   0.00038      15      60 ..      97     142 ..      92     149 .. 0.92
   2 !   14.8   0.0   5.4e-05    0.0037     132     167 ..     188     223 ..     176     252 .. 0.84
   3 !   32.4   0.1   2.2e-10   1.5e-08      33     181 ..     713     868 ..     698     879 .. 0.79

  Alignments for each domain:
  == domain 1    score: 18.0 bits;  conditional E-value: 5.4e-06
   TIGR01189  15 lleglsfelaaGealvveGpnGiGKttLLRilaGLlkpesGeveln 60 
                  l+++++++  G++  v G+ G+GK++LL +l G ++++ G+++++
  MMETSP1137-20121227|1778_1  97 ALRNINMRMPRGKLTFVLGEVGSGKSSLLQLLLGEMRANRGHMAVD 142
                 578999************************************9987 PP

  == domain 2    score: 14.8 bits;  conditional E-value: 5.4e-05
   TIGR01189 132 qkrRlalarLllskaplWiLDEPttalDkegvella 167
                 qk R+++ar l  k  l++LD+P+ a+D++  + l 
  MMETSP1137-20121227|1778_1 188 QKARISMARALYGKPSLFLLDDPLSAVDAHVSRHLV 223
                 9***************************99877665 PP

  == domain 3    score: 32.4 bits;  conditional E-value: 2.2e-10
   TIGR01189  33 GpnGiGKttLLRilaGLlkpesGevelndkelaeqrdelaeellylgHldglKaeLsalEnLkfyaallqseqktveealekvgL......sgledlpv....aqLsAGqkrRlalarLllskaplWiLDEPttalDkegvellaellaaHlargGivl 181
                 G+ G+GK++L   l  L++ ++G++++++ +++     + ++ + +  +d++  + +++ nL+   + +++   ++++al +v+       +++ d+ v    a+LsAG ++ l++a  ll + ++ +LDE t+++D ++ +++++++++  +   i  
  MMETSP1137-20121227|1778_1 713 GRTGAGKSSLSVALFRLVELAAGSITIDGVDISSLGLAMLRRAMTIIQQDAMLFAGTIRSNLDPIGTHSDE---ALDAALRTVDFvrhaggEATLDTNVaeggANLSAGTRQLLGVAGALLRHSRIVMLDEATASIDFTTDATIQRVVRKSFDAATILT 868
                 899*******************************9999999999999***************977665552...2333333333311000033334443222268*****************************************9999877655444 PP

>> TIGR01288  nodI: nodulation ABC transporter NodI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   0.0     0.016       1.1      22      63 ..     100     141 ..      88     154 .. 0.86
   2 !   26.6   0.0   8.2e-09   5.7e-07     141     222 ..     189     273 ..     178     277 .. 0.89
   3 !   28.8   0.7   1.9e-09   1.3e-07      37     223 ..     713     900 ..     710     911 .. 0.78

  Alignments for each domain:
  == domain 1    score: 6.0 bits;  conditional E-value: 0.016
   TIGR01288  22 dlsftiaagecfgllgpngagkstiarlvlglispdegkitv 63 
                 ++ + + +g+   +lg  g+gks++ +l+lg +  ++g+++v
  MMETSP1137-20121227|1778_1 100 NINMRMPRGKLTFVLGEVGSGKSSLLQLLLGEMRANRGHMAV 141
                 56677888999999************************9988 PP

  == domain 2    score: 26.6 bits;  conditional E-value: 8.2e-09
   TIGR01288 141 krrltlaralindpqllildepttgldph.arhliwerlrsll..argktilltthlmeeaerlcdrlcvleagrkiaegrpdal 222
                 k r+++aral   p l++ld+p + +d h +rhl+   +  l+  ++  t++l +h ++ ++ l   ++++eagr +a+g  + l
  MMETSP1137-20121227|1778_1 189 KARISMARALYGKPSLFLLDDPLSAVDAHvSRHLVDFAISGLMltTLRATVVLVSHQLQFTHELAASVVLMEAGRVVAQGDANEL 273
                 789**************************559***99998876225678******************************987765 PP

  == domain 3    score: 28.8 bits;  conditional E-value: 1.9e-09
   TIGR01288  37 gpngagkstiarlvlglispdegkitvlgepvpararla.rakigvvpqfdnldreftvrenllvfgryfglstreieevips..llefarleskadvrv....adlsggmkrrltlaralindpqllildepttgldpharhliwerlrsllargktilltthlmeeaerlcdrlcvleagrkiaegrpdali 223
                 g  gagks+++  ++ l+    g it+ g ++ +   +  r ++ ++ q d++    t+r nl   g +       +++++ +  ++  a  e+  d++v    a+ls g ++ l +a+al+   ++++lde t+ +d  +   i   +r  +    til  +h ++      d + v+ +g     g p  l+
  MMETSP1137-20121227|1778_1 713 GRTGAGKSSLSVALFRLVELAAGSITIDGVDISSLGLAMlRRAMTII-QQDAMLFAGTIRSNLDPIGTHSD---EALDAALRTvdFVRHAGGEATLDTNVaeggANLSAGTRQLLGVAGALLRHSRIVMLDEATASIDFTTDATIQRVVRKSFD-AATILTIAHRLDTVID-YDDVIVMSHGVAAECGAPAQLL 900
                 678************************99999887554415555555.669999999******99997643...33444433200333444566666666222268*********************************999999888887664.6799999999987655.5778899999998889888776 PP

>> TIGR03522  GldA_ABC_ATP: gliding motility-associated ABC transporter ATP-binding subunit GldA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.1   0.0    0.0051      0.35      17      62 ..      97     142 ..      84     146 .. 0.91
   2 !   16.8   0.0   1.1e-05   0.00076     139     222 ..     189     276 ..     174     283 .. 0.83
   3 !   23.5   0.1   1.1e-07   7.4e-06      35     208 ..     713     888 ..     710     899 .. 0.76

  Alignments for each domain:
  == domain 1    score: 8.1 bits;  conditional E-value: 0.0051
   TIGR03522  17 aldevsfeaekGeivGflGPnGaGkstlmkiltgylkadsGsvava 62 
                 al ++ +++ +G+++  lG  G+Gks+l+++l g ++a+ G +av+
  MMETSP1137-20121227|1778_1  97 ALRNINMRMPRGKLTFVLGEVGSGKSSLLQLLLGEMRANRGHMAVD 142
                 78899999*********************************99986 PP

  == domain 2    score: 16.8 bits;  conditional E-value: 1.1e-05
   TIGR03522 139 rqrvGlakallhdPkvlildePttGldPn...qlveirevikei.akdktvilsthimqevealcdrviiinkGkivadkkleelkaa 222
                 + r+ +a+al  +P++++ld+P + +d      lv+      ++ +   tv+l +h +q  + l   v++++ G++va+ + +el ++
  MMETSP1137-20121227|1778_1 189 KARISMARALYGKPSLFLLDDPLSAVDAHvsrHLVDFAISGLMLtTLRATVVLVSHQLQFTHELAASVVLMEAGRVVAQGDANELASM 276
                 6799***********************8522267765433333314567999***************************999999765 PP

  == domain 3    score: 23.5 bits;  conditional E-value: 1.1e-07
   TIGR03522  35 GPnGaGkstlmkiltgylkadsGsvavagedvlknslev.rkniGylPehnPlyldlyvreylefsaalyklkgrklkkrveelielvG....lkaeqhkkigalskGyrqrvGlakallhdPkvlildePttGldPnqlveirevikeiakdktvilsthimqevealcdrviiinkG 208
                 G  GaGks+l   l   ++  +Gs++++g d+    l++ r+ +  + +   l+    +r  l+ +++  +        r  ++++++G    l ++     ++ls G rq  G+a all + ++++lde t+ +d      i++v+++   + t++  +h +  v    d+vi++ +G
  MMETSP1137-20121227|1778_1 713 GRTGAGKSSLSVALFRLVELAAGSITIDGVDISSLGLAMlRRAMTIIQQDAMLFA-GTIRSNLDPIGTHSDEA-LDAALRTVDFVRHAGgeatLDTNVAEGGANLSAGTRQLLGVAGALLRHSRIVMLDEATASIDFTTDATIQRVVRKSFDAATILTIAHRLDTVID-YDDVIVMSHG 888
                 5678888888888888888888888888888888777651555555555555554.46788888887754433.333344445555555122245555555578******************************************************9**9998865.5788888777 PP

>> TIGR01978  sufC: FeS assembly ATPase SufC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0   1.6e-05    0.0011      15      57 ..      97     137 ..      91     144 .. 0.84
   2 !   14.7   0.0   4.8e-05    0.0033     152     230 ..     191     271 ..     164     278 .. 0.80
   3 !   14.5   0.1   5.6e-05    0.0039      33     228 ..     713     895 ..     706     904 .. 0.80

  Alignments for each domain:
  == domain 1    score: 16.2 bits;  conditional E-value: 1.6e-05
   TIGR01978  15 iLkglnlevkkGevhaimGpnGsGkstLskvlaghekyevtsG 57 
                  L+++n+ + +G++  ++G  GsGks L + l g+ +    +G
  MMETSP1137-20121227|1778_1  97 ALRNINMRMPRGKLTFVLGEVGSGKSSLLQLLLGEMR--ANRG 137
                 699******************************9864..4455 PP

  == domain 2    score: 14.7 bits;  conditional E-value: 4.8e-05
   TIGR01978 152 rneilqlallePklaiLDeiDsGlDvDalkivae.gvnklree..ekalliithyerllelikPdvvhvlldGrivksGdve 230
                 r  + + +  +P+l +LD+  s +D    + +++  ++ l  +  + ++++++h+ ++ ++++   v ++ +Gr+v++Gd++
  MMETSP1137-20121227|1778_1 191 RISMARALYGKPSLFLLDDPLSAVDAHVSRHLVDfAISGLMLTtlRATVVLVSHQLQFTHELAAS-VVLMEAGRVVAQGDAN 271
                 55556666669***************999987763577654433489999************976.5689*********975 PP

  == domain 3    score: 14.5 bits;  conditional E-value: 5.6e-05
   TIGR01978  33 GpnGsGkstLskvlaghekyevtsGeiklkgqdlleleveeraraGlflafqapeeipGvsnkeflrsalnavrkargeeeldllefekllkeklelleldeelleRslneGfsGGekkrneilqlallePklaiLDeiDsGlDvDalkivaegvnklreeekalliithyerllelikPdvvhvlldGrivksGd 228
                 G+ G+Gks Ls +l     +e+++G+i+++g d+++l      r+ + +  q ++  +G   +++    + +++++  +++l +++f   ++++    +ld++++e   n   s G ++   +   +l + ++++LDe+ + +D  +  ++ ++v k      a  i+t  +rl   i  d v v+ +G  ++ G 
  MMETSP1137-20121227|1778_1 713 GRTGAGKSSLSVALFR--LVELAAGSITIDGVDISSLGLAM-LRRAMTIIQQDAMLFAGTIRSNLD--PIGTHSDEALDAALRTVDF---VRHAGGEATLDTNVAEGGAN--LSAGTRQLLGVAGALLRHSRIVMLDEATASIDFTTDATIQRVVRKS---FDAATILTIAHRLDTVIDYDDVIVMSHGVAAECGA 895
                 889********99985..68999**************9875.566788889999999998666653..3333333455667888888...55666677788899998888..79******************************99988888887654...445556666679999*************9888776 PP

>> TIGR02324  CP_lyasePhnL: phosphonate C-P lyase system protein PhnL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.0   6.3e-06   0.00044      23      68 ..      97     142 ..      88     167 .. 0.90
   2 ?    5.1   0.0     0.041       2.9     155     191 ..     189     225 ..     187     260 .. 0.70
   3 ?    5.1   0.0     0.042         3      41      69 ..     713     741 ..     705     766 .. 0.83
   4 !   16.1   0.0   1.8e-05    0.0013     148     208 ..     813     872 ..     808     884 .. 0.88

  Alignments for each domain:
  == domain 1    score: 17.6 bits;  conditional E-value: 6.3e-06
   TIGR02324  23 vlkevsleveaGelvalsGksGaGkstllkslyanYlpesgrilvr 68 
                 +l+++++++  G+l+ + G+ G+Gks+ll+ l ++ +++ g++ v 
  MMETSP1137-20121227|1778_1  97 ALRNINMRMPRGKLTFVLGEVGSGKSSLLQLLLGEMRANRGHMAVD 142
                 689***********************************99998875 PP

  == domain 2    score: 5.1 bits;  conditional E-value: 0.041
   TIGR02324 155 kqRvniaraliadrPiLLLdePtasLdaanrkvvvel 191
                 k R+ +aral  +  + LLd+P +++da  ++  v++
  MMETSP1137-20121227|1778_1 189 KARISMARALYGKPSLFLLDDPLSAVDAHVSRHLVDF 225
                 78*********95556699********9877666654 PP

  == domain 3    score: 5.1 bits;  conditional E-value: 0.042
   TIGR02324  41 GksGaGkstllkslyanYlpesgrilvrh 69 
                 G++GaGks+l  +l++    ++g+i++  
  MMETSP1137-20121227|1778_1 713 GRTGAGKSSLSVALFRLVELAAGSITIDG 741
                 99*******************9*998865 PP

  == domain 4    score: 16.1 bits;  conditional E-value: 1.8e-05
   TIGR02324 148 atfsGGekqRvniaraliadrPiLLLdePtasLdaanrkvvvelikeakargaaligifhd 208
                 a  s G +q + +a al+ +  i++Lde tas+d ++ +++  ++++   + a++++i h 
  MMETSP1137-20121227|1778_1 813 ANLSAGTRQLLGVAGALLRHSRIVMLDEATASIDFTTDATIQRVVRKS-FDAATILTIAHR 872
                 56899*********************************9888888876.567889999995 PP

>> TIGR01257  rim_protein: rim ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.0   1.1e-05    0.0008    2075    2154 ..     188     270 ..     178     277 .. 0.82
   2 !   29.4   0.4   2.7e-10   1.9e-08     963    1177 ..     713     927 ..     705     951 .. 0.79

  Alignments for each domain:
  == domain 1    score: 14.1 bits;  conditional E-value: 1.1e-05
   TIGR01257 2075 nkrklstaialigcpplvlldepttgmdpqarrmlwntivs..iiregra.vvltshsmeecealctrlaimvkgafqclgti 2154
                  +k ++s a al g p l lld+p + +d +  r l +  +s  ++   ra vvl sh ++    l++ + +m  g + + g  
  MMETSP1137-20121227|1778_1  188 QKARISMARALYGKPSLFLLDDPLSAVDAHVSRHLVDFAISglMLTTLRAtVVLVSHQLQFTHELAASVVLMEAGRVVAQGDA 270 
                  68899*************************99999887665333344555389***************999999887766655 PP

  == domain 2    score: 29.4 bits;  conditional E-value: 2.7e-10
   TIGR01257  963 ghngagktttlsiltgllpptsgtvlvggkdiet.nldavrqslgmcpqhnilfhhltvaehilfyaqlkgrsweeaqlemeamle...dtglhhkrneeaqdlsgglqrklsvaiafvgdakvvvldeptsgvdpysrrsiwdlllkyrsgrtiimsthhmdeadllgdriaiisqgrlycsgtplflkncfgtglyltlvrkmkniqsqrkgsegtc 1177
                  g  gagk++    l  l+  ++g++ + g di +  l ++r+++ +  q  +lf   t+   +        ++ + a   ++ +     ++ l  +  e   +ls g ++ l va a++  +++v+lde t+ +d  +  +i  ++ k     ti+  +h +d   +  d + ++s+g     g+p  l    g  l+ +lvr   + qs +  +e++ 
  MMETSP1137-20121227|1778_1  713 GRTGAGKSSLSVALFRLVELAAGSITIDGVDISSlGLAMLRRAMTIIQQDAMLFAG-TIRSNLDPIGTHSDEALDAALRTVDFVRHaggEATLDTNVAEGGANLSAGTRQLLGVAGALLRHSRIVMLDEATASIDFTTDATIQRVVRKSFDAATILTIAHRLDTV-IDYDDVIVMSHGVAAECGAPAQLLRNEG-SLFSALVRDTGT-QSAKSLRESAM 927 
                  789****99888899*****************863799*************99975.77777777777777777777666665544111445888899999************************************************************9976.6677888999999988888887666555.578899998654.55555555433 PP

>> TIGR00954  3a01203: peroxysomal long chain fatty acyl transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.0   1.9e-06   0.00013     470     538 ..      99     168 ..      92     187 .. 0.83
   2 !   11.0   0.0   0.00031     0.021     588     622 ..     188     222 ..     182     245 .. 0.87
   3 !   10.1   0.0   0.00059     0.041     551     646 ..     781     880 ..     762     888 .. 0.82

  Alignments for each domain:
  == domain 1    score: 18.3 bits;  conditional E-value: 1.9e-06
   TIGR00954 470 eeLsfevksGnhlLiiGPnGcGKsslfRi.lgelWPvygglltkpeegklFyvPqrPYmslgtlRdqiiY 538
                  +++++++ G+   ++G  G GKssl  + lge+   +g +      g + yvPq  ++ + tlR+ ++ 
  MMETSP1137-20121227|1778_1  99 RNINMRMPRGKLTFVLGEVGSGKSSLLQLlLGEMRANRGHMAVDRGAGPVGYVPQGAWVLNATLRENVVL 168
                 67899********************977526888777766666666899******************985 PP

  == domain 2    score: 11.0 bits;  conditional E-value: 0.00031
   TIGR00954 588 ekqRiamARlfyHkPkfavLDEctsAvsvdvEdkl 622
                 +k Ri+mAR +y kP   +LD+  sAv   v  +l
  MMETSP1137-20121227|1778_1 188 QKARISMARALYGKPSLFLLDDPLSAVDAHVSRHL 222
                 689************************99887666 PP

  == domain 3    score: 10.1 bits;  conditional E-value: 0.00059
   TIGR00954 551 sdkdLeqiLeevkLedllereggwda.vqdWkdvLsgGekqRiamARlfyHkPkfavLDEctsAvsvdvEdklyelakev..gitllsvshr.ksLwkyH 646
                 sd+ L + L +v+       e ++d+ v++    Ls G +q +++A  +  + + ++LDE+t+ +    +  + + +++     t+l+++hr  +++ y 
  MMETSP1137-20121227|1778_1 781 SDEALDAALRTVDFVRHAGGEATLDTnVAEGGANLSAGTRQLLGVAGALLRHSRIVMLDEATASIDFTTDATIQRVVRKSfdAATILTIAHRlDTVIDYD 880
                 5667777777777666666666666438888889*****************************************999853467999****944666665 PP

>> TIGR03719  ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   1.6e-05    0.0011     337     392 ..      97     153 ..      87     168 .. 0.80
   2 !   16.3   0.0   8.6e-06   0.00059     166     237 ..     188     265 ..     178     296 .. 0.89
   3 !    7.4   0.0    0.0044       0.3     443     488 ..     814     859 ..     787     879 .. 0.76

  Alignments for each domain:
  == domain 1    score: 15.4 bits;  conditional E-value: 1.6e-05
   TIGR03719 337 liddlsfklpkggivGviGpnGaGkstlfklitgkekpdsGelkiGetv.klayvdq 392
                  + ++++++p+g +  v+G  G+Gks l++l+ g+ + ++G++ +      ++yv q
  MMETSP1137-20121227|1778_1  97 ALRNINMRMPRGKLTFVLGEVGSGKSSLLQLLLGEMRANRGHMAVDRGAgPVGYVPQ 153
                 567899999999999999999999999999999999999999988654315666666 PP

  == domain 2    score: 16.3 bits;  conditional E-value: 8.6e-06
   TIGR03719 166 ekrrvalcrlllekPdlllldePtnhldaesvaWlekf......lkeykGtvvavthdryfldnvaeWileldrGegi 237
                 +k r++++r l  kP l+lld+P   +da     l  f      l+  + tvv+v h   f  + a  ++ ++ G+ +
  MMETSP1137-20121227|1778_1 188 QKARISMARALYGKPSLFLLDDPLSAVDAHVSRHLVDFaisglmLTTLRATVVLVSHQLQFTHELAASVVLMEAGRVV 265
                 588**************************9988887654444448999******************999999999876 PP

  == domain 3    score: 7.4 bits;  conditional E-value: 0.0044
   TIGR03719 443 elsGGernrvhlakllkeggnvllldePtndldvetlraleealle 488
                 +ls G r+ + +a  l +++ +++lde t  +d  t  +++  + +
  MMETSP1137-20121227|1778_1 814 NLSAGTRQLLGVAGALLRHSRIVMLDEATASIDFTTDATIQRVVRK 859
                 6888888888888888888888888888888888887777766654 PP

>> TIGR02633  xylG: D-xylose ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.4   0.0   0.00049     0.034      13      49 ..      94     130 ..      90     136 .. 0.93
   2 !   10.4   0.0   0.00049     0.034     145     228 ..     187     273 ..     163     278 .. 0.79
   3 !   17.5   0.0   3.4e-06   0.00023     132     213 ..     805     884 ..     698     900 .. 0.67

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 0.00049
   TIGR02633  13 gvkaldnidlklraGeivslcGenGaGkstlmkvlsg 49 
                 +v al ni++++  G++  + Ge G+Gks+l+++l g
  MMETSP1137-20121227|1778_1  94 DVFALRNINMRMPRGKLTFVLGEVGSGKSSLLQLLLG 130
                 799*****************************99876 PP

  == domain 2    score: 10.4 bits;  conditional E-value: 0.00049
   TIGR02633 145 Gqqqlveiakalnkqvrllildepsaslteketeilldi.irdlkak..gvacvyishkleevkavsdtisvirdGqhvatkdaeal 228
                  q+  + +a+al  +  l++ld+p +++ ++  + l+d  i  l       + v +sh+l+  + ++  + ++  G+ va  da++l
  MMETSP1137-20121227|1778_1 187 XQKARISMARALYGKPSLFLLDDPLSAVDAHVSRHLVDFaISGLMLTtlRATVVLVSHQLQFTHELAASVVLMEAGRVVAQGDANEL 273
                 455678999999999999999999999999999999997466665440055678999999999999999999999999999888776 PP

  == domain 3    score: 17.5 bits;  conditional E-value: 3.4e-06
   TIGR02633 132 asnvtrpvsdlGlGqqqlveiakalnkqvrllildepsaslteketeilldiirdlkakgvacvyishkleevkavsdtisv 213
                 ++nv+   ++l  G +ql+ +a al ++ r+++lde +as+  +   ++  ++r     + + + i+h+l+ v    d i v
  MMETSP1137-20121227|1778_1 805 DTNVAEGGANLSAGTRQLLGVAGALLRHSRIVMLDEATASIDFTTDATIQRVVRKS-FDAATILTIAHRLDTVIDYDDVI-V 884
                 34666667788999999999999999999999999999999887777777777753.23344567999999987665544.3 PP

>> TIGR00955  3a01204: pigment precursor permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   0.2     0.019       1.3      41      75 ..      98     132 ..      81     141 .. 0.85
   2 !   23.1   0.0   7.9e-08   5.5e-06     171     256 ..     188     275 ..     186     343 .. 0.84
   3 !   16.2   0.7   9.1e-06   0.00063      58     254 ..     713     899 ..     712     907 .. 0.74

  Alignments for each domain:
  == domain 1    score: 5.3 bits;  conditional E-value: 0.019
   TIGR00955  41 lknvsGvaksGellAvlGsSGaGKtTLlnalafrs 75 
                 l+n+   +  G+l  vlG  G+GK+ Ll+ l    
  MMETSP1137-20121227|1778_1  98 LRNINMRMPRGKLTFVLGEVGSGKSSLLQLLLGEM 132
                 5666667789******************9997655 PP

  == domain 2    score: 23.1 bits;  conditional E-value: 7.9e-08
   TIGR00955 171 erkRlalaselltdPilLfcDEPTsGLDsfsaasvvkvL.kk..laqkgktviltiHQPsselfelfdkiillaeGrvvylGspeeavk 256
                 ++ R+++a  l  +P+l+++D+P s  D+  + ++v     +  l++ + tv+l+ HQ      el   ++l++ Grvv +G ++e+++
  MMETSP1137-20121227|1778_1 188 QKARISMARALYGKPSLFLLDDPLSAVDAHVSRHLVDFAiSGlmLTTLRATVVLVSHQLQF-THELAASVVLMEAGRVVAQGDANELAS 275
                 678*********************************864243337899**********765.58999****************999876 PP

  == domain 3    score: 16.2 bits;  conditional E-value: 9.1e-06
   TIGR00955  58 GsSGaGKtTLlnalafrsekglkvsgdvllnGekvea...kemraisayvqqddlfiptltvrehLmfsahlrlkrrltkkekrerveevleelgLrkcadtrigvpgrvkglSgGerkRlalaselltdPilLfcDEPTsGLDsfsaasvvkvLkklaqkgktviltiHQPsselfelfdkiillaeGrvvylGspeea 254
                 G  GaGK+ L  al fr   +l   g+++++G  + +    ++r+  + +qqd +++   t+r +L    +   + + +      r  + +++ g +   dt +   g    lS+G r+ l +a  ll    ++++DE T+++D ++ a++ +v++k      t+++  H    +    +d +i++++G  +  G+p ++
  MMETSP1137-20121227|1778_1 713 GRTGAGKSSLSVAL-FRL-VELAA-GSITIDGVDISSlglAMLRRAMTIIQQDAMLFAG-TIRSNLDPIGT---HSDEAL-DAALRTVDFVRHAGGEATLDTNVAEGGA--NLSAGTRQLLGVAGALLRHSRIVMLDEATASIDFTTDATIQRVVRKSF-DAATILTIAHRL--DTVIDYDDVIVMSHGVAAECGAPAQL 899
                 67899999986555.343.34444.5799999877542227888888888888877654.77777764433...232222.4455555677888999999999997775..9********************************988888888888855.555666666764..444579*********99999999887 PP

>> TIGR02323  CP_lyasePhnK: phosphonate C-P lyase system protein PhnK
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.4   0.0   0.00052     0.036      21      60 ..     101     141 ..      85     149 .. 0.82
   2 !   17.1   0.4     9e-06   0.00063     147     222 ..     189     270 ..     179     281 .. 0.84
   3 !    8.0   0.1    0.0056      0.39     140     224 ..     813     899 ..     712     910 .. 0.79

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 0.00052
   TIGR02323  21 vsf.lypGevlgivGesGsGkstllkalaarlladaGevty 60 
                 +++ +  G++  ++Ge GsGks+ll+ l +++ a++G++  
  MMETSP1137-20121227|1778_1 101 INMrMPRGKLTFVLGEVGSGKSSLLQLLLGEMRANRGHMAV 141
                 66634447888899*********************999865 PP

  == domain 2    score: 17.1 bits;  conditional E-value: 9e-06
   TIGR02323 147 qqrlqiarnlvtrprlvfm.eptGGl.vsvqarll..llrgl.vrelglaviivth.lavarllaqrllvmkqGrvvesGlt 222
                 + r+ +ar+l  +p l ++ +p   +   v   l+   + gl ++ l  +v++v+h l  +  la  +++m+ Grvv +G +
  MMETSP1137-20121227|1778_1 189 KARISMARALYGKPSLFLLdDPLSAVdAHVSRHLVdfAISGLmLTTLRATVVLVSHqLQFTHELAASVVLMEAGRVVAQGDA 270
                 57999*************98999999555555555654556525789999****************************9965 PP

  == domain 3    score: 8.0 bits;  conditional E-value: 0.0056
   TIGR02323 140 aafsGGmqqrlqiarnlvtrprlvfm.eptGGl.vsvqarllllrglvrelglavii.vth.lavarllaqrllvmkqGrvvesGlt.rv 224
                 a++s G +q l +a +l+ + r+v++ e t  +  + +a   + r + + ++ a+i+ ++h l  + +  + ++vm +G   e G   ++
  MMETSP1137-20121227|1778_1 813 ANLSAGTRQLLGVAGALLRHSRIVMLdEATASIdFTTDAT--IQRVVRKSFDAATILtIAHrLDTV-IDYDDVIVMSHGVAAECGAPaQL 899
                 6799**********************77777665555555..555555666666665256755554.44568999999999999875455 PP

>> TIGR01194  cyc_pep_trnsptr: cyclic peptide transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.6   0.0   5.3e-08   3.7e-06     351     401 ..      92     142 ..      81     148 .. 0.91
   2 ?   -1.3   0.0       1.8   1.3e+02     474     550 ..     188     267 ..     185     270 .. 0.67
   3 ?   -1.0   3.3       1.5     1e+02      20     171 ..     410     557 ..     402     673 .. 0.67
   4 !    8.2   0.0    0.0025      0.17     374     502 ..     713     847 ..     710     890 .. 0.77

  Alignments for each domain:
  == domain 1    score: 23.6 bits;  conditional E-value: 5.3e-08
   TIGR01194 351 ssegfalGpidlriasGelvyivGenGcGkstliklllGlyipqeGellld 401
                 +s+ fal  i++r+ +G+l +++Ge G Gks+l++lllG  + + G++ +d
  MMETSP1137-20121227|1778_1  92 ASDVFALRNINMRMPRGKLTFVLGEVGSGKSSLLQLLLGEMRANRGHMAVD 142
                 7999****************************************9999876 PP

  == domain 2    score: -1.3 bits;  conditional E-value: 1.8
   TIGR01194 474 qrkrlalvnayleerpvllldewaadqdpafkrvfyeellpdl..krrGktilvishddry.feladrlikladGkvvke 550
                 q+ r+++  a   +  ++lld+  +  d    r + +  +  l       t++++sh+ ++  ela  ++ + +G+vv +
  MMETSP1137-20121227|1778_1 188 QKARISMARALYGKPSLFLLDDPLSAVDAHVSRHLVDFAISGLmlTTLRATVVLVSHQLQFtHELAASVVLMEAGRVVAQ 267
                 55566666666666666666666666666666665555555441133457999*****998569*************976 PP

  == domain 3    score: -1.0 bits;  conditional E-value: 1.5
   TIGR01194  20 vavslllGlisGlaiilllav..inqalheetflrqvllsfvGlsllallsrivadlftayvsqriiarlrkelgekvlsapleeverrrahrlltlltsdidtlsdtllilttllvelavtlfglaylaylsvvvflltvvlivlGvaaylla 171
                 v ++lllG+i Gla    la   + + +  e       l ++ l + + ++        a  +    +r+   +   vl ap    +      +l+++++d dtl+d+ + +t + +  + tl + a    l v   ++ v+l vl v  y+++
  MMETSP1137-20121227|1778_1 410 VWLALLLGFIFGLACSRALADfmLGRWIS-EGTSDADALTYTVLIVATGVFGLLQACTFAQRTIAASTRIHSTVLSAVLHAPKAFFDTTPLGIVLAVFSKDQDTLDDL-FPITLVSLLKCATLVSTA----LVVSAIAVPVALAVLPVVGYFFY 557
                 56789999999999876666411344444.44444455677778888888887776665655666667777788999****************************995.444444443444444433....33444444555555555555444 PP

  == domain 4    score: 8.2 bits;  conditional E-value: 0.0025
   TIGR01194 374 GenGcGkstliklllGlyipqeGellldGeavsdesrddyrdlfsavfadyylfddlvqpde.....kkqasldqattylsrleledkvkvedlnyst.ttdlstGqrkrlalvnayleerpvllldewaadqdp 502
                 G  G Gks+l   l  l     G + +dG  +s+      r  ++ +  d  lf   +  +      + + +ld a + ++ +  +      d n +   ++ls G r+ l +  a l +  +++lde +a  d 
  MMETSP1137-20121227|1778_1 713 GRTGAGKSSLSVALFRLVELAAGSITIDGVDISSLGLAMLRRAMTIIQQDAMLFAGTIRSNLdpigtHSDEALDAALRTVDFVRHAGGEATLDTNVAEgGANLSAGTRQLLGVAGALLRHSRIVMLDEATASIDF 847
                 778****************************************************99986531110022233444444444444444455667776642578**************************9997664 PP

>> TIGR00956  3a01205: pleiotropic drug resistance family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.5   0.0     0.004      0.28      77     111 ..      98     132 ..      86     142 .. 0.85
   2 ?    3.0   0.0     0.046       3.2     905     942 ..     187     223 ..     183     275 .. 0.58
   3 !    8.2   0.1    0.0012     0.086     197     287 ..     803     888 ..     757     897 .. 0.67

  Alignments for each domain:
  == domain 1    score: 6.5 bits;  conditional E-value: 0.004
   TIGR00956  77 lkdvdglikpgelvvvLGrPgsGcstlLksiaskt 111
                 l++++  +  g+l+ vLG+ gsG+s+lL+ + +++
  MMETSP1137-20121227|1778_1  98 LRNINMRMPRGKLTFVLGEVGSGKSSLLQLLLGEM 132
                 7888889999******************9887766 PP

  == domain 2    score: 3.0 bits;  conditional E-value: 0.046
   TIGR00956 905 eqRkrltigveLvAkPklllFlDePtsGLDsqtawsiv 942
                  q+ r++++  L  kP +l  lD+P s +D++ +  +v
  MMETSP1137-20121227|1778_1 187 XQKARISMARALYGKP-SLFLLDDPLSAVDAHVSRHLV 223
                 5666666666666666.555666666666665554433 PP

  == domain 3    score: 8.2 bits;  conditional E-value: 0.0012
   TIGR00956 197 tkntkvGndlvRGvsGGerkRvsiaevlvakakiqcwDnatrGLDsatalefvkalktsaeilkatalvaiyqasqdayelFdkvvvlyeG 287
                 t +t+v +     +s G r+ + +a +l+ +++i ++D+at  +D +t   + +++++s    +a+++++i    + + + +d+v+v+++G
  MMETSP1137-20121227|1778_1 803 TLDTNVAEGG-ANLSAGTRQLLGVAGALLRHSRIVMLDEATASIDFTTDATIQRVVRKSF---DAATILTIAHRLDTVID-YDDVIVMSHG 888
                 5555554443.2366677777777777777777777777777777777766666666553...34445555544444443.5666666666 PP

>> TIGR00630  uvra: excinuclease ABC subunit A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.0   3.4e-05    0.0024     622     659 ..      97     134 ..      89     144 .. 0.82
   2 ?    3.0   0.1     0.071       4.9     828     902 ..     814     884 ..     807     894 .. 0.82

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 3.4e-05
   TIGR00630 622 nlkdidvsiplglltvitGvsgsGkstLindiLvkale 659
                  l++i++++p g+lt + G  gsGks+L++ +L ++ +
  MMETSP1137-20121227|1778_1  97 ALRNINMRMPRGKLTFVLGEVGSGKSSLLQLLLGEMRA 134
                 68999999999999999999999999999877766655 PP

  == domain 2    score: 3.0 bits;  conditional E-value: 0.071
   TIGR00630 828 tLsGGeaqrvkLakeLskrstgktlyilDePttGLhfdDikkLlevlqrlvdkGntvvviehnldviksaDyiid 902
                  Ls G  q + +a  L ++   + + +lDe t+ + f   + + +v+++  d+  t++ i h ld +   D +i 
  MMETSP1137-20121227|1778_1 814 NLSAGTRQLLGVAGALLRH---SRIVMLDEATASIDFTTDATIQRVVRKSFDA-ATILTIAHRLDTVIDYDDVIV 884
                 6888888888888888765...56899**********9999999999998876.79*********7766665554 PP

>> TIGR00157  TIGR00157: ribosome small subunit-dependent GTPase A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   0.0     0.011      0.74     122     148 ..     108     134 ..      97     146 .. 0.85
   2 ?    5.2   0.0     0.042       2.9     101     143 ..     685     727 ..     669     740 .. 0.85

  Alignments for each domain:
  == domain 1    score: 7.1 bits;  conditional E-value: 0.011
   TIGR00157 122 krisvfaGqSGVGKSSLiNlldpevkq 148
                  +++ + G+ G GKSSL+ ll++e+++
  MMETSP1137-20121227|1778_1 108 GKLTFVLGEVGSGKSSLLQLLLGEMRA 134
                 688999***************999876 PP

  == domain 2    score: 5.2 bits;  conditional E-value: 0.042
   TIGR00157 101 kvllvsvkneegleelkeklkkrisvfaGqSGVGKSSLiNlld 143
                 + l+vsv+ + + ++++++ ++++ v  G+ G GKSSL  +l 
  MMETSP1137-20121227|1778_1 685 RTLFVSVERALTYSRIEQEPAHNTPVRGGRTGAGKSSLSVALF 727
                 4689**********************************76665 PP

>> TIGR00929  VirB4_CagE: type IV secretion/conjugal transfer ATPase, VirB4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   0.0    0.0014     0.094     440     477 ..     111     146 ..     106     152 .. 0.86

  Alignments for each domain:
  == domain 1    score: 8.7 bits;  conditional E-value: 0.0014
   TIGR00929 440 TlIfGptgsGKTvllnfllaqlqkykpltiiafDkdrg 477
                 T+++G+ gsGK+ ll++ll +++  ++   +a D++ g
  MMETSP1137-20121227|1778_1 111 TFVLGEVGSGKSSLLQLLLGEMRANRG--HMAVDRGAG 146
                 99*******************998666..677777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1040 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       305  (0.074354); expected 82.0 (0.02)
Passed bias filter:                      175  (0.0426621); expected 82.0 (0.02)
Passed Vit filter:                        78  (0.0190151); expected 4.1 (0.001)
Passed Fwd filter:                        59  (0.0143832); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              59  [number of targets reported over threshold]
# CPU time: 2.42u 0.23s 00:00:02.65 Elapsed: 00:00:01.59
# Mc/sec: 863.32
//
Query:       MMETSP1137-20121227|1779_1  [L=230]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0023   15.4   0.0     0.0085   13.5   0.0    1.8  1  TIGR01262 maiA: maleylacetoacetate isomerase


Domain annotation for each model (and alignments):
>> TIGR01262  maiA: maleylacetoacetate isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   0.0   2.1e-06    0.0085      37     196 ..      58     205 ..      29     217 .. 0.69

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 2.1e-06
   TIGR01262  37 eqkkeefkalNPqelvPtLkidegevltqSlAiieyLeetypepaLlpkdpakrarvralalliacdihPlqNlrvlqlleeklgvdeeekkewlkhwiekGlaalEellkekagafcvGdevtladvcLvpqvynAerfevd.laqyPtlkrieealael 196
                 +   +  k+  P + +P+L +d g+ l qS  i+ y        +L+p+dp + a   ++a++ a+d+  +  + ++++ +  +    e+k++++++      + l +l k+ +g f+ Gd+++  d+ +   +   + +e + la++P+   + +a+++l
  MMETSP1137-20121227|1779_1  58 KGWGDGAKQETPYGGLPVLLVD-GKPLAQSGSILRYAASLA---KLVPADPFEAALCDSVAEA-ASDL--VLAMPLVNMFRGDT--FTEKKAAFCATC----PTVLKNLAKQYKGPFFLGDNPYYCDLAVYHYLSLIKLIEPSlLADFPKADVLMAAVEAL 205
                 55556678889***********.6************77654...5*********999999987.5665..44455555555432..355666666654....45677778888888888888888888877666655555444235566665555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (230 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        53  (0.0129205); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.21u 0.15s 00:00:00.36 Elapsed: 00:00:00.35
# Mc/sec: 867.36
//
Query:       MMETSP1137-20121227|1780_1  [L=635]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      1e-19   67.7   0.1    4.1e-12   42.5   0.0    2.1  2  TIGR01408 Ube1: ubiquitin-activating enzyme E1
      3e-08   31.1   0.8    5.5e-08   30.3   0.0    1.8  2  TIGR02356 adenyl_thiF: thiazole biosynthesis adenylyltransferase ThiF
    2.6e-05   21.5   0.2    5.7e-05   20.4   0.0    1.6  2  TIGR02355 moeB: molybdopterin synthase sulfurylase MoeB


Domain annotation for each model (and alignments):
>> TIGR01408  Ube1: ubiquitin-activating enzyme E1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.5   0.0     3e-15   4.1e-12      16     145 ..      50     183 ..      43     201 .. 0.86
   2 !   23.1   0.0   2.1e-09   2.9e-06     287     387 ..     469     573 ..     452     592 .. 0.76

  Alignments for each domain:
  == domain 1    score: 42.5 bits;  conditional E-value: 3e-15
   TIGR01408  16 deamkklaksnvlisGmkGlGveiaknlvlaGvksvtlhdeekvelwdlssnfflseddvgknraeasvkklaelnqyvvvssvskslnke......flkkfqvvvlteislekqleindfcrsqqppiafikadv 145
                 + a   + +  v ++       e  knlvl G+   t+ d  +v   dl+ nff+ e  +g +ra  + + l+eln+ v+ + vs+ + +       fl+ f +v+ t++  +   ++   c ++  p   i   +
  MMETSP1137-20121227|1780_1  50 SMAXAAMEECSVCLINGSATSTETLKNLVLPGIGKFTIVDGAVVSEADLGNNFFVDESFLGSSRAACVTQLLQELNEHVQGAYVSEDISQVlesrpdFLNTFGIVIATQLPAKELQQVAAICANRLIP--LIVVHS 183
                 566677888888888888899**********************************************************999888877665667788************9999999999999888844..444444 PP

  == domain 2    score: 23.1 bits;  conditional E-value: 2.1e-09
   TIGR01408 287 fqaldafkekaerlPrags..eedaeellklatkiaet..leekveevdeklvkelsytakgvlsplaallGGvvaqevlkavtgkfsPlkqylyldsveslese 387
                 ++  +a++++ ++ P  g   eed   + ++++++a+   l +    + ++l+ e+     + + ++a+++GG+++qe +kav  ++ Pl   + ++ ++   s 
  MMETSP1137-20121227|1780_1 469 LRGAQAYRAERSNWPGQGEdvEEDLPAFKQFVNNVAKElnLSNGGSAISDDLMLEFCRWGASEMHSVASVMGGIASQEAIKAVCHQYVPLNNTFIFNGLNGTTSV 573
                 555667788888888777511467777888888888873233445789999988887555578899******************************999877765 PP

>> TIGR02356  adenyl_thiF: thiazole biosynthesis adenylyltransferase ThiF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.3   0.0     4e-11   5.5e-08      19     158 ..      56     197 ..      47     216 .. 0.90
   2 ?   -3.7   0.1      0.98   1.3e+03     186     202 ..     534     550 ..     532     551 .. 0.78

  Alignments for each domain:
  == domain 1    score: 30.3 bits;  conditional E-value: 4e-11
   TIGR02356  19 lleskvliiGaGgLgsavaeylaaaGvgtiaivDdDevdlsNlqrqilfaeedvkrpKveaaaerlkelnseirvealkeevta..enleelieqvdlvlDctDnfktrylindaceaagkPlisaavvgfeGqvavldssk 158
                 + e +v +i   + +++ ++ l+  G+g+ +ivD   v+   l      +e+ ++ ++++ + + l+eln++++   ++e++ +  e   + +++  +v+ ++   k  + + ++c++  +Pli+   +gf G++ v+ +++
  MMETSP1137-20121227|1780_1  56 MEECSVCLINGSATSTETLKNLVLPGIGKFTIVDGAVVSEADLGNNFFVDESFLGSSRAACVTQLLQELNEHVQGAYVSEDISQvlESRPDFLNTFGIVIATQLPAKELQQVAAICANRLIPLIVVHSYGFMGYLRVVLNEH 197
                 566778888888899999****************************************************************984355668899********9999999**************************9987664 PP

  == domain 2    score: -3.7 bits;  conditional E-value: 0.98
   TIGR02356 186 pvvgvigslqaleAlkl 202
                 +v +v+g +  +eA+k+
  MMETSP1137-20121227|1780_1 534 SVASVMGGIASQEAIKA 550
                 57888999999999886 PP

>> TIGR02355  moeB: molybdopterin synthase sulfurylase MoeB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   0.0   4.2e-08   5.7e-05      26     156 ..      60     192 ..      40     204 .. 0.84
   2 ?   -4.0   0.0       1.2   1.6e+03     187     206 ..     533     552 ..     529     560 .. 0.76

  Alignments for each domain:
  == domain 1    score: 20.4 bits;  conditional E-value: 4.2e-08
   TIGR02355  26 kvlivGlGGlGcaasqylaaaGvGrltlvdfdtvelsnlqrqvlhsdanigqpkvesakdaleelnphieietinakldd..eelaaliakhdvvvdctdnvevrnqlnrqcfaakvplvsgaairleGqvsv 156
                 +v ++        + + l   G+G++t+vd  +v+ ++l  + +  ++ +g  +     + l+eln h++   +++ +++  e   ++++++ +v+ +    +  +q+ + c ++ +pl+   +  + G + v
  MMETSP1137-20121227|1780_1  60 SVCLINGSATSTETLKNLVLPGIGKFTIVDGAVVSEADLGNNFFVDESFLGSSRAACVTQLLQELNEHVQGAYVSEDISQvlESRPDFLNTFGIVIATQLPAKELQQVAAICANRLIPLIVVHSYGFMGYLRV 192
                 555555555555666788999*************************************************999999888743456789**********9999999***************9888877777766 PP

  == domain 2    score: -4.0 bits;  conditional E-value: 1.2
   TIGR02355 187 apvvGvvGslqaleaikvll 206
                   v  v+G + + eaik + 
  MMETSP1137-20121227|1780_1 533 HSVASVMGGIASQEAIKAVC 552
                 56778889999999998764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (635 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       112  (0.0273038); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.44u 0.16s 00:00:00.60 Elapsed: 00:00:00.39
# Mc/sec: 2149.05
//
Query:       MMETSP1137-20121227|1782_1  [L=481]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (481 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        74  (0.01804); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.15s 00:00:00.48 Elapsed: 00:00:00.51
# Mc/sec: 1244.84
//
Query:       MMETSP1137-20121227|1783_1  [L=240]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (240 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        81  (0.0197465); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.18s 00:00:00.41 Elapsed: 00:00:00.31
# Mc/sec: 1021.85
//
Query:       MMETSP1137-20121227|1784_1  [L=256]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (256 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       242  (0.0589956); expected 82.0 (0.02)
Passed bias filter:                      171  (0.041687); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.13s 00:00:00.38 Elapsed: 00:00:00.38
# Mc/sec: 889.19
//
Query:       MMETSP1137-20121227|1785_1  [L=369]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (369 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        95  (0.0231594); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.15s 00:00:00.40 Elapsed: 00:00:00.56
# Mc/sec: 869.71
//
Query:       MMETSP1137-20121227|1786_1  [L=170]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.5e-26   90.9   0.0    1.7e-26   90.8   0.0    1.0  1  TIGR03684 arCOG00985: arCOG04150 universal archaeal PUA-domain protein
    3.1e-24   83.1   0.0    4.6e-24   82.6   0.0    1.2  1  TIGR00451 unchar_dom_2: uncharacterized domain 2
    8.9e-06   22.9   0.0    1.2e-05   22.4   0.0    1.2  1  TIGR00425 CBF5: putative rRNA pseudouridine synthase


Domain annotation for each model (and alignments):
>> TIGR03684  arCOG00985: arCOG04150 universal archaeal PUA-domain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.8   0.0   1.2e-29   1.7e-26       4     152 ..      10     164 ..       7     166 .. 0.89

  Alignments for each domain:
  == domain 1    score: 90.8 bits;  conditional E-value: 1.2e-29
   TIGR03684   4 lskkelkelleeleeslgekaielekkkvevaetkkkeiilv..dgkpllfev.deeliptlklllelklekkvvvVDeGAvkfiinGAdvmapGivevdeeike...gdivvvveekhrkplavgvalmdaeeiveekkGkavknlhhvgDkiw 152
                 ++++e + + +++ +++ + +i+++k+ + v + ++   +lv  +g+ ++f+  ++  iptl++l+++    ++  VD+GA+kf+++GA++m+pG +++ +++ e   + i++++ e +++ la+g+ + + ++i +e+kG av+n h+++D++w
  MMETSP1137-20121227|1786_1  10 VKSSEQRGIRAAVLDQYPALEILPKKDPMFVCKCQNYVQLLVapNGEFIFFQSrSGPFIPTLRMLHKYPDILPKFQVDHGAIKFVLSGANIMSPGLTSAGGKMDEvgaDSIIAIMAEGKEHALAIGITTASTADIRRENKGIAVENTHYLKDDLW 164
                 577788888888888888888999999999999999965666589******9878999****************************************98776643327899999**************************************** PP

>> TIGR00451  unchar_dom_2: uncharacterized domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.6   0.0   3.3e-27   4.6e-24       4     107 .]      54     161 ..      51     161 .. 0.92

  Alignments for each domain:
  == domain 1    score: 82.6 bits;  conditional E-value: 3.3e-27
   TIGR00451   4 dgevlllkkfd.kvilslkgakklkeekklvkvdegavkFllngadvlkPGiveadedik...ekdvvvvvdenkdralavGialvsgeeikevekGkavkvihhikD 107
                 +ge ++++     +i++l+ ++k ++  +  +vd+ga+kF+l+ga++++PG+++a+ +++    + ++ +++e k++ala+Gi+  s+ +i++ +kG av++ h++kD
  MMETSP1137-20121227|1786_1  54 NGEFIFFQSRSgPFIPTLRMLHKYPDILPKFQVDHGAIKFVLSGANIMSPGLTSAGGKMDevgADSIIAIMAEGKEHALAIGITTASTADIRRENKGIAVENTHYLKD 161
                 68888888654389*****************************************98888443678899**************************************9 PP

>> TIGR00425  CBF5: putative rRNA pseudouridine synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.4   0.0     9e-09   1.2e-05     237     308 ..      81     156 ..      68     164 .. 0.84

  Alignments for each domain:
  == domain 1    score: 22.4 bits;  conditional E-value: 9e-09
   TIGR00425 237 lkrvvvkdsavdaicyGadlavrGlakl...edgiekedtvvvitl.kgeavavgkalmstkdiaaadkGvvvdvk 308
                 l++  v   a++ +  Ga+++ +Gl       d++  ++ +++++  k+ a+a+g+++ st+di + +kG++v+  
  MMETSP1137-20121227|1786_1  81 LPKFQVDHGAIKFVLSGANIMSPGLTSAggkMDEVGADSIIAIMAEgKEHALAIGITTASTADIRRENKGIAVENT 156
                 677888999****************97622257899999999998538889*********************9865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (170 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        75  (0.0182838); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.19u 0.16s 00:00:00.35 Elapsed: 00:00:00.31
# Mc/sec: 723.81
//
Query:       MMETSP1137-20121227|1787_1  [L=262]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (262 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       110  (0.0268162); expected 82.0 (0.02)
Passed bias filter:                       97  (0.023647); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.16s 00:00:00.40 Elapsed: 00:00:00.43
# Mc/sec: 804.21
//
Query:       MMETSP1137-20121227|1788_1  [L=461]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.014   12.3   0.0      0.023   11.6   0.0    1.3  1  TIGR03404 bicupin_oxalic: bicupin, oxalate decarboxylase family


Domain annotation for each model (and alignments):
>> TIGR03404  bicupin_oxalic: bicupin, oxalate decarboxylase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   5.5e-06     0.023      85     140 ..     402     460 ..     392     461 .] 0.82

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 5.5e-06
   TIGR03404  85 hkeaeWayvlkGsvritavde...egrsyvddveaGDlwyFpkGvphslqaldegaefl 140
                 h+e    yv++G+++++++++   e  +y + +++GDl y p+ +ph   +++++  +l
  MMETSP1137-20121227|1788_1 402 HEEMLMLYVVAGTIKVSILQSppyEKAVYQKFLDKGDLLYLPSWLPHRFTSVEHDQSVL 460
                 55566679***********8633367788899****************99998776666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (461 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        73  (0.0177962); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.15s 00:00:00.48 Elapsed: 00:00:00.51
# Mc/sec: 1193.08
//
Query:       MMETSP1137-20121227|1789_1  [L=355]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (355 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       164  (0.0399805); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.16s 00:00:00.42 Elapsed: 00:00:00.43
# Mc/sec: 1089.68
//
Query:       MMETSP1137-20121227|1790_1  [L=807]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (807 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        58  (0.0141394); expected 82.0 (0.02)
Passed bias filter:                       39  (0.00950756); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.15s 00:00:00.61 Elapsed: 00:00:00.57
# Mc/sec: 1836.47
//
Query:       MMETSP1137-20121227|1791_1  [L=805]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (805 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        76  (0.0185275); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.47u 0.16s 00:00:00.63 Elapsed: 00:00:00.57
# Mc/sec: 1831.92
//
Query:       MMETSP1137-20121227|1792_1  [L=353]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.1e-40  136.7   0.0    2.7e-40  136.3   0.0    1.1  1  TIGR03992 Arch_glmU: UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase
    8.9e-30  101.6   0.0    2.6e-29  100.0   0.0    1.7  1  TIGR01208 rmlA_long: glucose-1-phosphate thymidylyltransferase
      3e-18   64.0   0.0    6.1e-11   40.1   0.0    2.2  2  TIGR02623 G1P_cyt_trans: glucose-1-phosphate cytidylyltransferase
    4.4e-14   50.1   0.0    9.9e-12   42.4   0.0    2.2  2  TIGR02091 glgC: glucose-1-phosphate adenylyltransferase
    1.4e-12   45.0   0.0    9.4e-11   39.0   0.0    2.8  1  TIGR01173 glmU: UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase
    2.9e-09   34.7   0.0    0.00019   19.0   0.0    2.2  2  TIGR01099 galU: UTP-glucose-1-phosphate uridylyltransferase
    2.1e-08   31.5   0.1    5.2e-07   26.9   0.0    2.1  1  TIGR01207 rmlA: glucose-1-phosphate thymidylyltransferase
    4.4e-07   27.0   0.0      6e-07   26.5   0.0    1.2  1  TIGR01853 lipid_A_lpxD: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
    8.6e-06   23.0   0.1    2.7e-05   21.4   0.0    1.7  2  TIGR01852 lipid_A_lpxA: acyl-[acyl-carrier-protein]-UDP-N-acetylglucosamine O-acyltransferase
    2.4e-05   21.5   0.0      0.071   10.1   0.0    2.2  2  TIGR01105 galF: regulatory protein GalF
    2.7e-05   22.1   0.9    0.00013   19.9   0.3    1.9  2  TIGR01172 cysE: serine O-acetyltransferase
    4.5e-05   21.0   0.3    7.5e-05   20.2   0.2    1.4  1  TIGR03570 NeuD_NnaD: sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family
    0.00037   17.7   0.5     0.0021   15.2   0.2    2.0  2  TIGR03991 alt_bact_glmU: UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase
     0.0026   15.5   0.0     0.0041   14.9   0.0    1.3  1  TIGR00454 TIGR00454: TIGR00454 family protein
  ------ inclusion threshold ------
      0.036   10.9   0.0       0.37    7.6   0.0    2.2  2  TIGR02092 glgD: glucose-1-phosphate adenylyltransferase, GlgD subunit


Domain annotation for each model (and alignments):
>> TIGR03992  Arch_glmU: UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  136.3   0.0   9.8e-43   2.7e-40       1     326 [.       1     324 [.       1     335 [. 0.84

  Alignments for each domain:
  == domain 1    score: 136.3 bits;  conditional E-value: 9.8e-43
   TIGR03992   1 mkavilaAGkGeRlrPltetrpKvllpvagkpllehliealkeagieelvlvvgyek.....ekvkeyfgd.ksklgveveyveqeeqlGtadAlkaakekvddeflvlngDvlleseeleklieaee.aaiavvevedpsdyGvvev..eegkvteivEKpeeppsnliNaGiYlleeeifellekvklSeRgElEltdalkalieeekvkaveldekWldvgrPWdlleanealleklkeevegeve...envklkgevvveegavvrsgayieGpvligknaeiGPnayiRpatvigedvkvgnaveiKnsiimeetkipHlsYvGDSvigedvN 326
                 mkav+l+ G  + lrPlt t p +ll+  +++ll+h+++alk+agi+e+++    ++     +  +e +++ +++l ++++  + e+++Gta Alk a+  ++d      g     ++ l+  +++ +  ++++++++ ps+yGvv+   + g+v + vEKpe+  s+liNaG+Y+++++if+l++         + + ++l +++++e+++ + l ++W+ +  P  ++ea +a le  +    g++    ++ + kg+v+v+  a++  g+++   v+ig ++++     +   t+  e+v+v +++ +Kns+i   + i+   Yv  Sv ge v 
  MMETSP1137-20121227|1792_1   1 MKAVVLVGGLSTQLRPLTLTVPLPLLQFCNQTLLSHQLQALKDAGISEVIICY--REtagvpKMWEEAISQlEQELRIRITCSREEREMGTAGALKLAEPLITD------GGANDARDLLRVHVKHGRqGTVLTTRTDTPSEYGVVVSdeRTGRVLHFVEKPETYVSELINAGVYAFSPSIFSLIRAD-----CAVSMNEVLPRMAQDEQLHSMLLTGYWVKLRTPLSFMEAVHAHLEISRFMSPGQLTssvDGYTTKGNVMVHPTAKIGRGCVLGPSVVIGPKCVVEDGVRLEDVTL-LEGVTVRSHALVKNSLIGWSSVIGRWCYVIGSVFGESVS 324
                 99*********************************************987765..331111123334443313345688899999999**********998655......555555666665555543379999************9965679*******************************9943.....34567789************************************97666666665511156689****************9999999******999999987775.689********************************9986 PP

>> TIGR01208  rmlA_long: glucose-1-phosphate thymidylyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  100.0   0.0   9.6e-32   2.6e-29       1     333 [.       2     327 ..       2     335 .. 0.81

  Alignments for each domain:
  == domain 1    score: 100.0 bits;  conditional E-value: 9.6e-32
   TIGR01208   1 kalilaaGkGtrlrPltftrakqlipvankPilqyaiedlveagikdigivvseetk..eeikeivge.gekfgvkityilqkeplGlahavlvardflgdedfvvylGdnlleegikkfvksfeekdldalillkkvkdPtafGvaeled.GkrilklvekPkeppsnlavvGlylfrplifeaikelkPswrgeleitdaiqkliekgykvelakvkGWWkdtGkkedlleanrlildevek....evkGvkekskieGrvkveegakivnsvirGP.aviGedviiensyigpytsigegvvikdae.veksivldesviegvekriedsviGkkvkikk 333
                 ka++l +G  t+lrPlt t +  l++  n+ +l + +++l +agi ++ i   e+ +  ++ +e++ + +++  ++it    + ++G a a+++a+  ++d       G n  ++ ++ +vk+    + + ++l ++ + P+++Gv + ++   r+l++vekP++ +s+l  +G+y f p if  i+         + + + +  +  ++++++++ ++G+W    ++  ++ea +  l+  +     ++  + +    +G v+v+ +aki ++ + GP +viG ++++e+    + +++ egv++++   v++s++   s+++g    +  sv G+ v++k+
  MMETSP1137-20121227|1792_1   2 KAVVLVGGLSTQLRPLTLTVPLPLLQFCNQTLLSHQLQALKDAGISEVIICYRETAGvpKMWEEAISQlEQELRIRITCSREEREMGTAGALKLAEPLITDG------GANDARDLLRVHVKH----GRQGTVLTTRTDTPSEYGVVVSDErTGRVLHFVEKPETYVSELINAGVYAFSPSIFSLIRADCA-----VSMNEVLPRM-AQDEQLHSMLLTGYWVKLRTPLSFMEAVHAHLEISRFmspgQLTSSVDGYTTKGNVMVHPTAKIGRGCVLGPsVVIGPKCVVEDGVRLEDVTLLEGVTVRSHAlVKNSLIG-WSSVIGRWCYVIGSVFGESVSVKD 327
                 89**********************************************998877543225566665542567899999999*************98887775......999999999999987....5567899*************99998677*****************************9985333.....3344455555.67899***********************99998444300113444555567789******************5679********965555566667777665505566555.555556666999*******99986 PP

>> TIGR02623  G1P_cyt_trans: glucose-1-phosphate cytidylyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.8   0.0   8.4e-08   2.3e-05       1      53 [.       1      53 [.       1      75 [. 0.95
   2 !   40.1   0.0   2.2e-13   6.1e-11     134     233 ..     107     211 ..      99     219 .. 0.86

  Alignments for each domain:
  == domain 1    score: 21.8 bits;  conditional E-value: 8.4e-08
   TIGR02623  1 mkavilagglgtriseetalrpkpmveiggkpilwhilkiysaygikefiicl 53
                mkav+l ggl t++   t   p p+++   + +l h l+     gi e iic 
  MMETSP1137-20121227|1792_1  1 MKAVVLVGGLSTQLRPLTLTVPLPLLQFCNQTLLSHQLQALKDAGISEVIICY 53
                9***************************************************6 PP

  == domain 2    score: 40.1 bits;  conditional E-value: 2.2e-13
   TIGR02623 134 dikaliafhkkegkkatl..tavqppgrfgaleleg..esvtsfkekpkgd.gglinggffvlepkvldlidgdatvwekepletlaekgelsayehegfwqpmd 233
                 d ++l+  h k+g++ t+  t +  p  +g +  ++   +v +f ekp+   + lin g + ++p+++ li  d +v  +e+l ++a+ ++l++   +g+w  + 
  MMETSP1137-20121227|1792_1 107 DARDLLRVHVKHGRQGTVltTRTDTPSEYGVVVSDErtGRVLHFVEKPETYvSELINAGVYAFSPSIFSLIRADCAVSMNEVLPRMAQDEQLHSMLLTGYWVKLR 211
                 6788999*********984455779*****98765411689*******9862679**********************************************8765 PP

>> TIGR02091  glgC: glucose-1-phosphate adenylyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.6   0.0    0.0054       1.5       3      52 ..       3      51 ..       1      57 [. 0.84
   2 !   42.4   0.0   3.6e-14   9.9e-12     128     360 ..     107     329 ..     105     335 .. 0.78

  Alignments for each domain:
  == domain 1    score: 5.6 bits;  conditional E-value: 0.0054
   TIGR02091  3 alvLaGGeGsrLspLtkkrakPavpfggkyrliDfalsncinsglkkilv 52
                a+vL GG  ++L+pLt ++  P ++f  +  l+   l  + ++g++++++
  MMETSP1137-20121227|1792_1  3 AVVLVGGLSTQLRPLTLTVPLPLLQFCNQ-TLLSHQLQALKDAGISEVII 51
                89***********************9865.57777888888888877765 PP

  == domain 2    score: 42.4 bits;  conditional E-value: 3.6e-14
   TIGR02091 128 dyekllkkhiekkadvtvaalevprkeAsefGvlkvdee.griveFeEKpkkpkslkkkedkslasmGiYiFkkevLkelleedakeeesseDfGkdiipklleegkvqaykfsgYWrDvGtidsfyeanldlvseepeldlydkkwpi..ytkee..qlppakfveskeakvkds.lvaegcvisg.atvenSvlgervriesesevedsvvlgevkigenakikkaiidknvrigegv 360
                 d ++ll+ h++++ + tv +++  ++  se+Gv+  de+ gr+ +F+EKp++        ++ l + G+Y F+ + +++l+++d  +  s+    ++++p++++++++     +gYW  + t  sf ea  + ++ ++ ++  + ++ +  yt++   +++p+  +   +  +  s +++  cv+++ +++e+  l e+v+++s++ v++s++  +  ig+ +++  ++  + v++ + +
  MMETSP1137-20121227|1792_1 107 DARDLLRVHVKHGRQGTVLTTR--TDTPSEYGVVVSDERtGRVLHFVEKPETY-------VSELINAGVYAFSPS-IFSLIRAD--CAVSM----NEVLPRMAQDEQLHSMLLTGYWVKLRTPLSFMEAVHAHLEISRFMSPGQLTSSVdgYTTKGnvMVHPTAKIGR-GCVLGPSvVIGPKCVVEDgVRLEDVTLLEGVTVRSHALVKNSLIGWSSVIGRWCYVIGSVFGESVSVKDTI 329
                 8899*************97776..55689****99987538*********443.......4569********976.67788885..45554....58*******************************9877777776665544444441144433113455555555.3444445167889999885899999********************************99999999988765 PP

>> TIGR01173  glmU: UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.0   0.0   3.4e-13   9.4e-11       2     329 ..       2     314 ..       1     336 [. 0.80

  Alignments for each domain:
  == domain 1    score: 39.0 bits;  conditional E-value: 3.4e-13
   TIGR01173   2 svviLAAGkGtRmkS...klpKvLhelagkpmlehvieaarklsaekivvvlghga...eevkealkees......vkfvlqeeqlgTghAvkqalkalseeeeevlvlygDvPLisketleklleskkeekvtlltakledptgyGrivreee.gkvekivEekDaseeekeikeintGvyvfeskalkealaklsnnnaqgEyYltdvialakadgeevkavevkdeeevlGvNdrlqlaeleeilqkriakklleaGvtladPasvllekdveigqdvviepnvilegkvkigedvviGagsvikdsaikenakikaysvlekseigegasvGPfarl 329
                 ++v+L  G  t ++     +p  L + +++++l+h ++a ++   +++++ +   a   +  +ea+++ +      ++  ++e+++gT++A+k a + +++  ++      D     +  l ++  ++ + + t+lt++++ p+ yG +v +e  g+v + vE+     e    + in+Gvy+f+ +    + + ++++ a     + +v+  + +d+ + +++  + +     v  r+ l+ +e++  +  ++++++ G   +  +  + +++v ++   +i  +++l   v ig ++v+  g++++d+++ e++++++++ +++s ig ++ +G + ++
  MMETSP1137-20121227|1792_1   2 KAVVLVGGLSTQLRPltlTVPLPLLQFCNQTLLSHQLQALKDAGISEVIICYRETAgvpKMWEEAISQLEqelrirITCSREEREMGTAGALKLAEPLITDGGAN------D-----ARDLLRVHVKHGR-QGTVLTTRTDTPSEYGVVVSDERtGRVLHFVEKP----ETYVSELINAGVYAFSPS----IFSLIRADCAV---SMNEVLPRMAQDE-QLHSMLLTGY----WVKLRTPLSFMEAVHAHLEISRFMSPGQLTSSVDGYTTKGNVMVHPTAKIGRGCVLGPSVVIGPKCVVEDGVRLEDVTLLEGVTVRSHALVKNSLIGWSSVIGRWCYV 314
                 788999999998875222567779999*******************99999987653332334455444444577788899999**********99999955544......3.....3333333333332.579****************998769*******75....5556678********977....45556665554...4788999887775.5555544443....48899**************************************************************************************************88776 PP

>> TIGR01099  galU: UTP-glucose-1-phosphate uridylyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   0.0   2.7e-05    0.0073       2      58 ..       1      56 [.       1      87 [. 0.82
   2 !   19.0   0.0   6.8e-07   0.00019     139     224 ..     108     187 ..      92     212 .. 0.76

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 2.7e-05
   TIGR01099  2 rkaviPaaGlGtrlLPatkaiPkemlpivdkPliqyvveeaveaGieeivlvtgrsk 58
                +kav+ + Gl t+l P t ++P  +l   ++ l+ + ++ + +aGi+e+++   r+ 
  MMETSP1137-20121227|1792_1  1 MKAVVLVGGLSTQLRPLTLTVPLPLLQFCNQTLLSHQLQALKDAGISEVIIC-YRET 56
                69**********************************************8765.4444 PP

  == domain 2    score: 19.0 bits;  conditional E-value: 6.8e-07
   TIGR01099 139 lkqlielyektgasiiaveevpkeevskYGvidgeeveeelyevkdlvekPkpeeapsnlaivGrYvltpeifelleetkaGkgge 224
                  ++l++++ k g +   + +  ++  s+YGv+ +   +e++ +v ++vekP++    s+l+  G Y ++p+if+l++   a   +e
  MMETSP1137-20121227|1792_1 108 ARDLLRVHVKHGRQGTVL-TTRTDTPSEYGVVVS---DERTGRVLHFVEKPET--YVSELINAGVYAFSPSIFSLIRADCAVSMNE 187
                 567777777777665444.455678899***975...67788899*****975..679*****************99766555555 PP

>> TIGR01207  rmlA: glucose-1-phosphate thymidylyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.9   0.0   1.9e-09   5.2e-07       1     182 [.       2     176 ..       2     187 .. 0.83

  Alignments for each domain:
  == domain 1    score: 26.9 bits;  conditional E-value: 1.9e-09
   TIGR01207   1 kGiilaGGsGtrlypitlavskqllpvydkpmiyyplsvlmlaGirdiliistpe.dtp.rfkrllGd.GsefGvelsyavqespdGlaqafiigeefidddksalvlGdnifyGkdlsellkraaakeeGatvfayqvkdperyGvvefd.eegraisleekpakpksnyavtGlyfydnkvvei 182
                 k ++l GG  t+l p+tl+v   ll   ++ ++ + l +l  aGi +++i        p ++++ + +   e+ ++++ + +e+  G a a  ++e  i d  +           +d  +ll+   ++ +  tv++     p++yGvv  d + gr++ + ekp++  s+ + +G+y +  ++  +
  MMETSP1137-20121227|1792_1   2 KAVVLVGGLSTQLRPLTLTVPLPLLQFCNQTLLSHQLQALKDAGISEVIICYRETaGVPkMWEEAISQlEQELRIRITCSREEREMGTAGALKLAEPLITDGGA-----------NDARDLLRVHVKHGRQGTVLTTRTDTPSEYGVVVSDeRTGRVLHFVEKPETYVSELINAGVYAFSPSIFSL 176
                 679********************************************988643321233145555554246788999999999999********9999988643...........577888887777777778*************987762579**********************998777665 PP

>> TIGR01853  lipid_A_lpxD: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.5   0.0   2.2e-09     6e-07     103     175 ..     240     310 ..     194     330 .. 0.81

  Alignments for each domain:
  == domain 1    score: 26.5 bits;  conditional E-value: 2.2e-09
   TIGR01853 103 esakleeeveigpnvviganveiGenvkIgpgvvigddvkigdesviyanvviyeevklgknviiqagaviGs 175
                 +  + + +v + p + ig++  +G +v+Igp++v++d+v++ d +++  +v+++ +  l kn  i  ++viG 
  MMETSP1137-20121227|1792_1 240 DGYTTKGNVMVHPTAKIGRGCVLGPSVVIGPKCVVEDGVRLED-VTLLEGVTVR-SHALVKNSLIGWSSVIGR 310
                 44556789*********************************76.6677899999.677889999*******96 PP

>> TIGR01852  lipid_A_lpxA: acyl-[acyl-carrier-protein]-UDP-N-acetylglucosamine O-acyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   0.0   9.7e-08   2.7e-05       1      53 [.     250     300 ..     250     314 .. 0.80
   2 ?    0.5   0.0      0.24        65      11      49 ..     300     337 ..     291     340 .. 0.78

  Alignments for each domain:
  == domain 1    score: 21.4 bits;  conditional E-value: 9.7e-08
   TIGR01852   1 ihptaiieegaelgedveigpfavvgkevkigegvelkshvviegattiGent 53 
                 +hpta i  g  lg++v igp +vv+++v+++ +v+l + v++++++ + +n+
  MMETSP1137-20121227|1792_1 250 VHPTAKIGRGCVLGPSVVIGPKCVVEDGVRLE-DVTLLEGVTVRSHALV-KNS 300
                 8***************************9996.5677778888877654.444 PP

  == domain 2    score: 0.5 bits;  conditional E-value: 0.24
   TIGR01852  11 aelgedveigpfavvgkevkigegvelkshvviegatti 49 
                   +g +  ig +++v   v  ge v +k+ + ++gat +
  MMETSP1137-20121227|1792_1 300 SLIGWSSVIGRWCYVIGSV-FGESVSVKDTILLNGATVL 337
                 457888899****998776.7999999999999999965 PP

>> TIGR01105  galF: regulatory protein GalF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.5   0.0   0.00038       0.1       4      57 ..       1      54 [.       1      83 [. 0.87
   2 !   10.1   0.0   0.00026     0.071     172     272 ..     133     219 ..      93     227 .. 0.78

  Alignments for each domain:
  == domain 1    score: 9.5 bits;  conditional E-value: 0.00038
   TIGR01105  4 lkavipvaglgmhmlpatkaipkemlpivdkpmiqyivdeivaagikeillvth 57
                +kav+ v gl  ++ p t ++p  +l   ++ ++ + ++ +  agi e+++   
  MMETSP1137-20121227|1792_1  1 MKAVVLVGGLSTQLRPLTLTVPLPLLQFCNQTLLSHQLQALKDAGISEVIICYR 54
                69**********************************************998654 PP

  == domain 2    score: 10.1 bits;  conditional E-value: 0.00026
   TIGR01105 172 seysviqtkepldregkvsrivefiekpdqpqtldsdlmavgryvlsadiwaelertepgawgriqltdaiaelakkqsvdamlmtgdsydcgkkmgymqa 272
                 sey v+       ++ +  r++ f+ekp   +t  s+l+  g y +s  i++ l r++      + + + +  +a+ + + +ml+tg        + +m+a
  MMETSP1137-20121227|1792_1 133 SEYGVVV------SDERTGRVLHFVEKP---ETYVSELINAGVYAFSPSIFS-LIRAD----CAVSMNEVLPRMAQDEQLHSMLLTGYWVKLRTPLSFMEA 219
                 5555554......445778999***997...5899***************97.55655....4578999999999999999***99987777777777766 PP

>> TIGR01172  cysE: serine O-acetyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.3   4.7e-07   0.00013      61     103 ..     247     288 ..     219     318 .. 0.74
   2 ?    0.2   0.0      0.53   1.5e+02      80     116 ..     315     351 ..     308     352 .. 0.69

  Alignments for each domain:
  == domain 1    score: 19.9 bits;  conditional E-value: 4.7e-07
   TIGR01172  61 gvdihPaakigrgvliDhatGvviGetavigddvsiyqgvtL..G 103
                 +v +hP+akigrg ++  +  vviG  +v++d v + ++vtL  G
  MMETSP1137-20121227|1792_1 247 NVMVHPTAKIGRGCVL--GPSVVIGPKCVVEDGVRL-EDVTLleG 288
                 6889***********9..788**********97764.45554222 PP

  == domain 2    score: 0.2 bits;  conditional E-value: 0.53
   TIGR01172  80 tGvviGetavigddvsiyqgvtLGgtgkekg.kRhPtv 116
                 +G v Ge+++++d +++ +g t+   ++ +g  R P++
  MMETSP1137-20121227|1792_1 315 IGSVFGESVSVKDTILL-NGATVLPHKELRGnIRNPEI 351
                 68999******987765.55554444444443677765 PP

>> TIGR03570  NeuD_NnaD: sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   0.2   2.8e-07   7.5e-05     105     180 ..     241     314 ..     208     339 .. 0.71

  Alignments for each domain:
  == domain 1    score: 20.2 bits;  conditional E-value: 2.8e-07
   TIGR03570 105 GvvimagavinadvrigdnviintgavveHdceigdfvhiapgatlsGgvkigegvfiGagAtviqgvtIgkgavv 180
                 G     ++++++ ++ig+++++  ++v++  c+++d v +   +tl  gv++ +++++  ++ +     Ig ++ v
  MMETSP1137-20121227|1792_1 241 GYTTKGNVMVHPTAKIGRGCVLGPSVVIGPKCVVEDGVRLE-DVTLLEGVTVRSHALV-KNSLIGWSSVIGRWCYV 314
                 66666788999999999999999999999999999999986.6777777888888877.35556556666666655 PP

>> TIGR03991  alt_bact_glmU: UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.0      0.28        76      10     107 ..      10     103 ..       1     145 [. 0.65
   2 !   15.2   0.2   7.9e-06    0.0021     197     255 ..     243     302 ..     230     318 .. 0.85

  Alignments for each domain:
  == domain 1    score: 0.2 bits;  conditional E-value: 0.28
   TIGR03991  10 kveallpltelrpvaelrlgiltlleklekllekekav.iharrlteevleeryPevlvnelleedvllvnarllpdealaeelveealkagealvqkd 107
                    +l+plt + p+  l+    tll +  ++l+++ +  + ++ +  + + + + e+  ++l+      +  r+ ++++  e  ++ alk  e l+ ++
  MMETSP1137-20121227|1792_1  10 LSTQLRPLTLTVPLPLLQFCNQTLLSHQLQALKDAGISeVIICYRETAGVPKMWEEAI-SQLE----QELRIRITCSREEREMGTAGALKLAEPLITDG 103
                 55799*********99999999999999999998776644444333333322232222.2222....22334555555555555556666666555555 PP

  == domain 2    score: 15.2 bits;  conditional E-value: 7.9e-06
   TIGR03991 197 asdGpivigkdakveefsflegpvyigegarvkagarikggtsi.GttckiGGEveasvi 255
                 +++G +++ + ak+  +++l   v+ig+++ v++g r+++ t + G t++    v++s+i
  MMETSP1137-20121227|1792_1 243 TTKGNVMVHPTAKIGRGCVLGPSVVIGPKCVVEDGVRLEDVTLLeGVTVRSHALVKNSLI 302
                 789999999999999999999999999999999999998877766777777777777766 PP

>> TIGR00454  TIGR00454: TIGR00454 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   1.5e-05    0.0041       1      48 [.       1      52 [.       1      80 [. 0.84

  Alignments for each domain:
  == domain 1    score: 14.9 bits;  conditional E-value: 1.5e-05
   TIGR00454  1 mlalvmaGGkGtrlgr....vekPllevcGrklidhvlealkkakvdniivv 48
                m+a+v++GG  t+l      v  Pll+ c ++l+ h l+alk+a + ++i+ 
  MMETSP1137-20121227|1792_1  1 MKAVVLVGGLSTQLRPltltVPLPLLQFCNQTLLSHQLQALKDAGISEVIIC 52
                899*********98632225889************************99986 PP

>> TIGR02092  glgD: glucose-1-phosphate adenylyltransferase, GlgD subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.0       0.1        29       5      58 ..       3      55 ..       1      59 [. 0.84
   2 ?    7.6   0.0    0.0013      0.37     294     358 ..     269     335 ..     107     341 .. 0.83

  Alignments for each domain:
  == domain 1    score: 1.4 bits;  conditional E-value: 0.1
   TIGR02092  5 aiinlteskkklseLtkvRpvaalPfggrYrliDFvLSnlvNagirnvavlvkn 58
                a++     + +l++Lt + p+  l f +   l+  +L  l  agi +v++  ++
  MMETSP1137-20121227|1792_1  3 AVVLVGGLSTQLRPLTLTVPLPLLQF-CNQTLLSHQLQALKDAGISEVIICYRE 55
                66666667889999999999999999.677999***************998876 PP

  == domain 2    score: 7.6 bits;  conditional E-value: 0.0013
   TIGR02092 294 anGciieG..kvensilsRgvlvekdaliknsiilqeteigegaklekviiDKdvvieeneklagts 358
                 +  c++e   ++e+  l  gv+v+  al+kns+i  +++ig  + +   +    v +++   l+g++
  MMETSP1137-20121227|1792_1 269 GPKCVVEDgvRLEDVTLLEGVTVRSHALVKNSLIGWSSVIGRWCYVIGSVFGESVSVKDTILLNGAT 335
                 4456666412356777778888888888888888888888888877777777777777776666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (353 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       109  (0.0265724); expected 82.0 (0.02)
Passed bias filter:                      103  (0.0251097); expected 82.0 (0.02)
Passed Vit filter:                        26  (0.00633837); expected 4.1 (0.001)
Passed Fwd filter:                        15  (0.00365675); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.44u 0.16s 00:00:00.60 Elapsed: 00:00:00.62
# Mc/sec: 751.49
//
Query:       MMETSP1137-20121227|1793_1  [L=142]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (142 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        42  (0.0102389); expected 82.0 (0.02)
Passed bias filter:                       40  (0.00975134); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.12s 00:00:00.28 Elapsed: 00:00:00.27
# Mc/sec: 694.16
//
Query:       MMETSP1137-20121227|1795_1  [L=379]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0097   13.5   0.4      0.016   12.7   0.3    1.3  1  TIGR00624 tag: DNA-3-methyladenine glycosylase I


Domain annotation for each model (and alignments):
>> TIGR00624  tag: DNA-3-methyladenine glycosylase I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.7   0.3     4e-06     0.016     103     143 ..     221     259 ..     208     272 .. 0.78

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 4e-06
   TIGR00624 103 elesedlvellwsfvndkpqvrqrkadseipsvsseskals 143
                 +++++  +e +wsfv+++p+++q ++   +p  +  +++ s
  MMETSP1137-20121227|1795_1 221 HMSQQ--SETFWSFVAEDPELQQSRVACSVPEATVSASSWS 259
                 34444..999*********************8887665443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (379 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        58  (0.0141394); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.26u 0.14s 00:00:00.40 Elapsed: 00:00:00.43
# Mc/sec: 1163.35
//
Query:       MMETSP1137-20121227|1796_1  [L=223]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00097   16.6   0.8     0.0014   16.1   0.6    1.2  1  TIGR02737 caa3_CtaG: cytochrome c oxidase assembly factor CtaG


Domain annotation for each model (and alignments):
>> TIGR02737  caa3_CtaG: cytochrome c oxidase assembly factor CtaG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.6   3.3e-07    0.0014      15     102 ..      97     183 ..      89     192 .. 0.75

  Alignments for each domain:
  == domain 1    score: 16.1 bits;  conditional E-value: 3.3e-07
   TIGR02737  15 llilllavallyllitgpyrrrfekadkvskkqkvyfllgllllyivkGsPldllghliltahmvqmavlylvvppllllGiPawl.ye 102
                 +l l +++  + +++ ++ r r +++ ++ k+q + f+++l+ l   +G+ + ++  l  ++h ++ a+ y++++ l +lG+ +++ y 
  MMETSP1137-20121227|1796_1  97 ILWLAVKLIPTEVMVSARERAR-SEPLRLHKHQGAAFFIALIWLISLEGAAMAVMPLLPHSVHHFEHAI-YIALAALXVLGVGIYMlYT 183
                 4444444444445554444444.457789999**********************************997.7889999999998764154 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (223 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        83  (0.020234); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.21u 0.16s 00:00:00.37 Elapsed: 00:00:00.30
# Mc/sec: 981.12
//
Query:       MMETSP1137-20121227|1797_1  [L=137]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (137 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       164  (0.0399805); expected 82.0 (0.02)
Passed bias filter:                      121  (0.0294978); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.18s 00:00:00.35 Elapsed: 00:00:00.28
# Mc/sec: 645.80
//
Query:       MMETSP1137-20121227|1798_1  [L=143]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (143 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       177  (0.0431497); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.13s 00:00:00.30 Elapsed: 00:00:00.38
# Mc/sec: 496.70
//
Query:       MMETSP1137-20121227|1799_1  [L=667]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (667 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        89  (0.0216967); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.16s 00:00:00.55 Elapsed: 00:00:01.12
# Mc/sec: 786.04
//
Query:       MMETSP1137-20121227|1800_1  [L=172]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (172 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        66  (0.0160897); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.11s 00:00:00.30 Elapsed: 00:00:00.70
# Mc/sec: 324.32
//
Query:       MMETSP1137-20121227|1801_1  [L=136]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00019   18.6   0.0    0.00026   18.2   0.0    1.2  1  TIGR00837 araaP: aromatic amino acid transport protein


Domain annotation for each model (and alignments):
>> TIGR00837  araaP: aromatic amino acid transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.0   6.4e-08   0.00026       3      93 ..      31     122 ..      29     131 .. 0.75

  Alignments for each domain:
  == domain 1    score: 18.2 bits;  conditional E-value: 6.4e-08
   TIGR00837   3 aliiagtviGaGmlalPvstagawfivsllllillwllmllsg.l.lllEvlltyeagaslatlakdllGkkgniiaglsllfvlyiLlyAYi 93 
                 a +iagt+iG+G la+P +    +f       +l   +m+ s+    + +  + ++ g sla+l+k ++G +g ++  +++l  + + + A i
  MMETSP1137-20121227|1801_1  31 AALIAGTAIGGGFLAIPSVXDPDGFWANSDK-VLESEIMTNSAdRgSIDDDDSGTDPGISLASLTKVTFGPTGSVVCSAAFLAQMLAVVTAQI 122
                 679***************9999998665544.44444555554231444556667779*****************999998877777777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (136 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        73  (0.0177962); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.16u 0.11s 00:00:00.27 Elapsed: 00:00:00.75
# Mc/sec: 239.34
//
Query:       MMETSP1137-20121227|1802_1  [L=385]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.3e-93  309.0   0.0    1.4e-92  308.3   0.0    1.3  1  TIGR00874 talAB: transaldolase
    8.8e-18   62.3   0.0    1.9e-17   61.2   0.0    1.6  1  TIGR00875 fsa_talC_mipB: fructose-6-phosphate aldolase
    4.7e-12   43.7   0.0    8.1e-12   43.0   0.0    1.3  1  TIGR00876 tal_mycobact: transaldolase


Domain annotation for each model (and alignments):
>> TIGR00874  talAB: transaldolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  308.3   0.0     1e-95   1.4e-92       2     316 ..      60     382 ..      59     383 .. 0.89

  Alignments for each domain:
  == domain 1    score: 308.3 bits;  conditional E-value: 1e-95
   TIGR00874   2 kldqlkkltvvvadtGdieaikkyepqdattnPslilkaaklpky.aklideavaygkkqskddaqqveaaldklavnlgleilkivPGrvstevdarlsfdteatvekarkliklyekaGvdkerilikiastWeGiraaeelekeGiacnltllfslaqaiacaeakvtlisPfvGrildwykaatgkkeysaeedPGvasvkkiynyykkfgyetevmgasfr.......nieeilelaGvdlltispklldelkeseepverkldpesakk....vdakpieldesefrfelnedamateklaeGirkfaadlekleklleek 316
                 +l ql ++t++  dtG++++i++y    at   sl  + ++     ++ +++  ++ k  +  + + v  a+d+lavnlg ei+k+v G vstevd rlsf++e +v++a+++i++ye+aGv +er+lik+a+tWeG++a eelekeGi cn+tl+f++ qa+a+a+ ++ lisPf Grildw+ka+ g++  ++e+dPGv+ v+++y+y++kf+  t+ m as+r       +++ei++laG d++t++p ll +l+es+ep++r+ld+++a       ++    + e+efrf ln+d  +tek+aeGir f ad+ekle ++ +k
  MMETSP1137-20121227|1802_1  60 QLAQLAAMTTLSIDTGELDLIERYGKL-AT---SLTQQQTHCLFLkRDSLETRGTKDKGSGWSEDEAVALAMDRLAVNLGREIVKLVDGYVSTEVDPRLSFNKEESVKRAKRIIEMYEAAGVPRERVLIKLAATWEGLKAMEELEKEGITCNITLVFGFIQAVAAAQFGARLISPFPGRILDWHKAHGGEQAPAPEADPGVVEVARMYAYFRKFKHGTICMPASWRpsrgagfELDEIVALAGTDRMTLPPPLLSRLAESDEPLPRRLDAAQAAAsctdEEVAGGYIGEAEFRFLLNQDGCSTEKMAEGIRAFVADTEKLEAVMRNK 382
                 899*********************864.33...444433333222123444555566666778889***************************************************************************************************************************************************************96555555579*********************************9988665433455566799*********************************999876 PP

>> TIGR00875  fsa_talC_mipB: fructose-6-phosphate aldolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.2   0.0   1.4e-20   1.9e-17      43     135 ..     135     237 ..     122     315 .. 0.86

  Alignments for each domain:
  == domain 1    score: 61.2 bits;  conditional E-value: 1.4e-20
   TIGR00875  43 lkeilevveGsvsaev...isldaegmveeakelakla.......enivvkiPvtseGlkavkilkkeGiktnvtlvfsaaqallaakaGakyvsPfvgrldd 135
                  +ei+++v+G vs ev   +s + e+ v+ ak++ ++        e + +k+  t eGlka++ l+keGi+ n+tlvf   qa+ aa+ Ga+ +sPf gr+ d
  MMETSP1137-20121227|1802_1 135 GREIVKLVDGYVSTEVdprLSFNKEESVKRAKRIIEMYeaagvprERVLIKLAATWEGLKAMEELEKEGITCNITLVFGFIQAVAAAQFGARLISPFPGRILD 237
                 589************87779*************9988622222224699***************************************************865 PP

>> TIGR00876  tal_mycobact: transaldolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.0   0.0   5.9e-15   8.1e-12      92     159 ..     142     214 ..     129     226 .. 0.87

  Alignments for each domain:
  == domain 1    score: 43.0 bits;  conditional E-value: 5.9e-15
   TIGR00876  92 vdGrvslevdPrledeaeksideakelfki.....ldrPnllikvPaskaGlevvsallaesisvnvtlvfsv 159
                 vdG+vs evdPrl  + e s+++ak++  +     + r  +lik+ a+  Gl+++  l +e+i+ n+tlvf  
  MMETSP1137-20121227|1802_1 142 VDGYVSTEVDPRLSFNKEESVKRAKRIIEMyeaagVPRERVLIKLAATWEGLKAMEELEKEGITCNITLVFGF 214
                 8**********************99887653334467999*******************************75 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (385 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       130  (0.0316919); expected 82.0 (0.02)
Passed bias filter:                      113  (0.0275475); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.33u 0.16s 00:00:00.49 Elapsed: 00:00:00.68
# Mc/sec: 747.29
//
Query:       MMETSP1137-20121227|1803_1  [L=302]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (302 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        60  (0.014627); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.17s 00:00:00.42 Elapsed: 00:00:00.30
# Mc/sec: 1328.69
//
Query:       MMETSP1137-20121227|1804_1  [L=218]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (218 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        53  (0.0129205); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.17s 00:00:00.38 Elapsed: 00:00:00.57
# Mc/sec: 496.10
//
Query:       MMETSP1137-20121227|1806_1  [L=438]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.4e-31  105.1   0.1    1.1e-30  104.4   0.1    1.4  1  TIGR02356 adenyl_thiF: thiazole biosynthesis adenylyltransferase ThiF
    5.1e-22   76.3   0.0    7.9e-22   75.6   0.0    1.3  1  TIGR02355 moeB: molybdopterin synthase sulfurylase MoeB
    8.4e-20   69.3   0.1    1.4e-19   68.6   0.1    1.4  1  TIGR02354 thiF_fam2: thiamine biosynthesis protein ThiF
    6.4e-08   30.0   0.5      2e-07   28.4   0.4    1.8  1  TIGR03736 PRTRC_ThiF: PRTRC system ThiF family protein
    2.6e-07   26.6   0.1    3.4e-07   26.2   0.1    1.1  1  TIGR01408 Ube1: ubiquitin-activating enzyme E1
    0.00015   18.1   0.0    0.00021   17.7   0.0    1.2  1  TIGR01381 E1_like_apg7: E1-like protein-activating enzyme Gsa7p/Apg7p
     0.0025   14.8   0.1     0.0046   13.9   0.1    1.4  1  TIGR03911 pyrrolys_PylD: pyrrolysine biosynthesis protein PylD
  ------ inclusion threshold ------
      0.043   10.6   0.3      0.075    9.8   0.2    1.3  1  TIGR01035 hemA: glutamyl-tRNA reductase


Domain annotation for each model (and alignments):
>> TIGR02356  adenyl_thiF: thiazole biosynthesis adenylyltransferase ThiF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  104.4   0.1   2.1e-33   1.1e-30       2     203 .]      82     301 ..      81     301 .. 0.84

  Alignments for each domain:
  == domain 1    score: 104.4 bits;  conditional E-value: 2.1e-33
   TIGR02356   2 yarqlllkeige.egqqklleskvliiGaGgLgsavaeylaaaGvgtiaivDdDevdlsNlqrqilfaeedvkrpKveaaaerlkelnseirvealkeevta.enleelie..........qvdlvlDctDnfktrylindaceaagkPlisaavvg..feGqvavldsskgpclrcllpeapaadtak.sCaeaGv....igpvvgvigslqaleAlkll 203
                 y+r ++lk++g+ +  + ++ + v+++G+Gg+gs++ae+l++ G+g++ i+D D+v+l N++r   ++ ++ +++Kv+aa++ l+ +n+++++e ++ ++t+ en  + ++          +vdlvl c Dnf++r  in+ac++ g+ +  ++v +  ++G++ +l +++ +c+ c  p + a++  + + + +Gv    ++ ++g+++ + +++Alk+l
  MMETSP1137-20121227|1806_1  82 YSRLMALKKMGIvKNYEDIRFKTVMVVGVGGVGSVAAEMLVRCGIGKLLIFDYDKVELANMNR-LFYTPDQCGMTKVAAARKSLSFINPDVTIEDYNYNITTvENFDHFMNciskgsltggSVDLVLSCVDNFQARMSINQACNELGQTWFESGVAEnaVSGHIQLLRPGELACFECAPPLIVASGIDEsTLKREGVcaasLPTTMGIVAGFLVQNALKYL 301
                 8999*******6378899*******************************************99.68999******************************9873444333322223333333699****************************999863378****************99987765544314567787333356689999999999999987 PP

>> TIGR02355  moeB: molybdopterin synthase sulfurylase MoeB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.6   0.0   1.5e-24   7.9e-22       5     237 ..      82     331 ..      78     334 .. 0.76

  Alignments for each domain:
  == domain 1    score: 75.6 bits;  conditional E-value: 1.5e-24
   TIGR02355   5 ynrqiilkaldf.dGqeklkaskvlivGlGGlGcaasqylaaaGvGrltlvdfdtvelsnlqrqvlhsdanigqpkvesakdaleelnphieietinakldd.ee...laalia.......khdvvvdctdnvevrnqlnrqcfaakv.plvsgaai.rleGqvsvftyqaeepcyrclsklf.....genals..cveaGvlapvvGvvGslqaleaikvllkiGkelaGkllildalsleirelkllknaec 237
                 y+r + lk++ + +  e ++   v++vG+GG+G  a++ l   G+G+l + d+d+vel+n++r   ++  + g+ kv +a+++l+ +np + ie  n ++   e+   + + i+       ++d+v+ c dn + r  +n+ c++  +  + sg a   + G++ ++    e  c++c   l+      e++l    v a  l   +G+v      +a+k ll +G       l ++al+ ++  ++l  n+ec
  MMETSP1137-20121227|1806_1  82 YSRLMALKKMGIvKNYEDIRFKTVMVVGVGGVGSVAAEMLVRCGIGKLLIFDYDKVELANMNRLF-YTPDQCGMTKVAAARKSLSFINPDVTIEDYNYNITTvENfdhFMNCISkgsltggSVDLVLSCVDNFQARMSINQACNELGQtWFESGVAEnAVSGHIQLLRP-GELACFECAPPLIvasgiDESTLKreGVCAASLPTTMGIVAGFLVQNALKYLLDFGDVS--SYLGYNALQDHFPTMALKPNPEC 331
                 9999******973678**********************************************965.566689**********************999877542331113344442333333589********************9755056677664157899988764.46789999877762211123333211344555556789999999999999999999865..46888999999999999888888 PP

>> TIGR02354  thiF_fam2: thiamine biosynthesis protein ThiF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.6   0.1   2.7e-22   1.4e-19      13     109 ..      94     191 ..      67     230 .. 0.85

  Alignments for each domain:
  == domain 1    score: 68.6 bits;  conditional E-value: 2.7e-22
   TIGR02354  13 ekvveklkkasvaiaGlGGlGsnvainlaraGigklilvdfdvvepsnlnrqqykvsdvGkkktealkeqiseinPyveieiidekide.enleklfk 109
                  k +e+++  +v ++G+GG+Gs +a  l r Gigkl + d+d+ve +n+nr  y+ ++ G++k  a ++ +s inP v ie ++ +i+  en++++++
  MMETSP1137-20121227|1806_1  94 VKNYEDIRFKTVMVVGVGGVGSVAAEMLVRCGIGKLLIFDYDKVELANMNRLFYTPDQCGMTKVAAARKSLSFINPDVTIEDYNYNITTvENFDHFMN 191
                 467899999***************************************************************************99974489998875 PP

>> TIGR03736  PRTRC_ThiF: PRTRC system ThiF family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.4   0.4   3.9e-10     2e-07      13     141 ..     104     234 ..      99     246 .. 0.73

  Alignments for each domain:
  == domain 1    score: 28.4 bits;  conditional E-value: 3.9e-10
   TIGR03736  13 kvvlvGaGGtGsqllegLarlhkalkalGhpaGlkvtvlDdDtvseanvgRqafapadvGankaivl...vqRvnqllg.ldWeakperleveealssa...........dlvigavDnrkaRkailealeegssGarywLDlG 141
                 +v++vG+GG Gs   e L+r        G     k  ++D D+v  an+ R  ++p + G  k  +    +  +n  +   d++ +++ +e  ++ ++            dlv+++vDn +aR +i++a++  + G+  w + G
  MMETSP1137-20121227|1806_1 104 TVMVVGVGGVGSVAAEMLVRC-------GIG---KLLIFDYDKVELANMNRLFYTPDQCGMTKVAAArksLSFINPDVTiEDYNYNITTVENFDHFMNCiskgsltggsvDLVLSCVDNFQARMSINQACN--ELGQ-TWFESG 234
                 699**********99999985.......333...5689***********************9966551114445554432455555555555333333356678888889******************996..4455.455555 PP

>> TIGR01408  Ube1: ubiquitin-activating enzyme E1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.2   0.1   6.7e-10   3.4e-07     420     551 ..     103     235 ..      81     249 .. 0.79

  Alignments for each domain:
  == domain 1    score: 26.2 bits;  conditional E-value: 6.7e-10
   TIGR01408 420 lkvflvGaGaiGcellknlallGvatgkkGkitvtdddlieksnlnrqflfrprdigkaksevaasavavinprlkieayqnrvgp.etetifddefye......klsvvvnaldnvearlyvdsrclffekPllesGt 551
                   v++vG G +G       a + v +g  Gk+ + d d +e +n+nr f + p + g +k  +a ++ + inp ++ie y   +++ e  + f +   +        ++v++ +dn +ar+ +++ c    +  +esG 
  MMETSP1137-20121227|1806_1 103 KTVMVVGVGGVGSV----AAEMLVRCG-IGKLLIFDYDKVELANMNRLF-YTPDQCGMTKVAAARKSLSFINPDVTIEDYNYNITTvENFDHFMNCISKgsltggSVDLVLSCVDNFQARMSINQACNELGQTWFESGV 235
                 56788888888864....466678887.59*****************88.78999*************************98876412222333322222111225789******************999999999996 PP

>> TIGR01381  E1_like_apg7: E1-like protein-activating enzyme Gsa7p/Apg7p
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.0     4e-07   0.00021     331     419 ..      96     180 ..      26     185 .. 0.82

  Alignments for each domain:
  == domain 1    score: 17.7 bits;  conditional E-value: 4e-07
   TIGR01381 331 dlevlssvkvlllGaGtlGcqvarvllGyGvrhitfvdngkvsfsnPvrqslynfedcleggegkaetaakalkrifPaieasgvrlev 419
                 + e ++   v+++G G +G+  a +l+  G+ ++   d+ kv ++n  r  l+   d  + g +k  +a k+l  i P ++ + ++ ++
  MMETSP1137-20121227|1806_1  96 NYEDIRFKTVMVVGVGGVGSVAAEMLVRCGIGKLLIFDYDKVELANMNR--LFYTPD--QCGMTKVAAARKSLSFINPDVTIEDYNYNI 180
                 4566777789************************************887..544444..44679***************9999888766 PP

>> TIGR03911  pyrrolys_PylD: pyrrolysine biosynthesis protein PylD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.1   8.9e-06    0.0046     142     178 ..      99     136 ..      91     160 .. 0.83

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 8.9e-06
   TIGR03911 142 glkekdvlviGlGkvGtaaavalvkkGa.kvyvydkek 178
                 +++ k v+v+G+G vG  aa++lv  G  k+  +d +k
  MMETSP1137-20121227|1806_1  99 DIRFKTVMVVGVGGVGSVAAEMLVRCGIgKLLIFDYDK 136
                 67889*********************953666666555 PP

>> TIGR01035  hemA: glutamyl-tRNA reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.2   0.00015     0.075     173     211 ..      95     133 ..      85     144 .. 0.90

  Alignments for each domain:
  == domain 1    score: 9.8 bits;  conditional E-value: 0.00015
   TIGR01035 173 kilgsLkgkkvlliGaGemaeLvakhLkekgvkkvliln 211
                 k  ++++ k+v+++G+G +++ +a+ L + g++k+li +
  MMETSP1137-20121227|1806_1  95 KNYEDIRFKTVMVVGVGGVGSVAAEMLVRCGIGKLLIFD 133
                 56789999***************************9975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (438 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       164  (0.0399805); expected 82.0 (0.02)
Passed bias filter:                      140  (0.0341297); expected 82.0 (0.02)
Passed Vit filter:                        27  (0.00658216); expected 4.1 (0.001)
Passed Fwd filter:                         8  (0.00195027); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.41u 0.15s 00:00:00.55 Elapsed: 00:00:00.87
# Mc/sec: 664.50
//
Query:       MMETSP1137-20121227|1807_1  [L=297]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (297 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        49  (0.0119454); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.17s 00:00:00.39 Elapsed: 00:00:00.44
# Mc/sec: 890.93
//
Query:       MMETSP1137-20121227|1811_1  [L=370]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (370 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        70  (0.0170648); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.18s 00:00:00.47 Elapsed: 00:00:00.61
# Mc/sec: 800.59
//
Query:       MMETSP1137-20121227|1812_1  [L=265]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      6e-07   26.5   0.0    6.9e-07   26.3   0.0    1.1  1  TIGR00054 TIGR00054: RIP metalloprotease RseP
     0.0045   13.9   0.1       0.43    7.4   0.0    2.1  2  TIGR00225 prc: C-terminal processing peptidase


Domain annotation for each model (and alignments):
>> TIGR00054  TIGR00054: RIP metalloprotease RseP
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.3   0.0   3.3e-10   6.9e-07     128     241 ..      44     159 ..      27     217 .. 0.77

  Alignments for each domain:
  == domain 1    score: 26.3 bits;  conditional E-value: 3.3e-10
   TIGR00054 128 kkvieeldknsialeakiedgdeilsvdgkkikdfkdvrkqlaekagevsveilaerenitleeeke...lkelgpkielvlsdvvdnspaekaGlkeGDkilkidgeklkswrdlv 241
                 + vi+++    + ++  +  gd++ +vdg+     ++vr  ++  +++ ++ i ++ +  +le+  +   l  +    ++v+++v  + + ek Gl+e D+i+ idg+     + + 
  MMETSP1137-20121227|1812_1  44 NYVIGIVPGSPTFMKGDLCMGDKVVAVDGRSCSPNEEVRDIIVPGRKSYMFSI-VRNDPLVLEVVPGadgLLGIDIDDNMVIKTVPGTHAHEKSGLQELDQIVAIDGVFCSREQSVR 159
                 55666666666777888999*********************************.668889999887788888888889*****************************9887776654 PP

>> TIGR00225  prc: C-terminal processing peptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.5   0.0    0.0016       3.2      65      95 ..      45      76 ..      23      87 .. 0.82
   2 !    7.4   0.0   0.00021      0.43      62      92 ..     119     150 ..     109     163 .. 0.78

  Alignments for each domain:
  == domain 1    score: 4.5 bits;  conditional E-value: 0.0016
   TIGR00225 65 vivsplegsPAekag.ikpgDkIikvdgksva 95
                 ++ ++ gsP    g +  gDk+++vdg+s  
  MMETSP1137-20121227|1812_1 45 YVIGIVPGSPTFMKGdLCMGDKVVAVDGRSCS 76
                688899****987777************9865 PP

  == domain 2    score: 7.4 bits;  conditional E-value: 0.00021
   TIGR00225  62 deivivsplegsPA.ekagikpgDkIikvdgk 92 
                 d+ ++++ + g+ A ek+g++  D+I+++dg 
  MMETSP1137-20121227|1812_1 119 DDNMVIKTVPGTHAhEKSGLQELDQIVAIDGV 150
                 44466777888888579*************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (265 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        76  (0.0185275); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.23u 0.15s 00:00:00.38 Elapsed: 00:00:00.35
# Mc/sec: 999.35
//
Query:       MMETSP1137-20121227|1815_1  [L=70]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        50  (0.0121892); expected 82.0 (0.02)
Passed bias filter:                       44  (0.0107265); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.17s 00:00:00.29 Elapsed: 00:00:00.53
# Mc/sec: 174.33
//
Query:       MMETSP1137-20121227|1816_1  [L=245]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.7e-05   21.6   0.0    4.9e-05   21.2   0.0    1.2  1  TIGR01755 flav_wrbA: NAD(P)H:quinone oxidoreductase, type IV


Domain annotation for each model (and alignments):
>> TIGR01755  flav_wrbA: NAD(P)H:quinone oxidoreductase, type IV
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.0   1.2e-08   4.9e-05      63     163 ..      85     187 ..      67     211 .. 0.88

  Alignments for each domain:
  == domain 1    score: 21.2 bits;  conditional E-value: 1.2e-08
   TIGR01755  63 reeladydaiivGtatryGnmasqmrafldqtGGlwakgalvgkvgsvftss..atqhGGqestilsfivtllhhGmiivglsyaakeqldvdevrGGspyGv 163
                 +ee  +y a++  t++r+ ++++ +  + +q+  l a    ++ ++s+++      q   +e+  l+ + +++ hG ++ +l +a+ +  + d  + G   G 
  MMETSP1137-20121227|1816_1  85 VEEAQGYQALVASTTARFSEISATVNIVREQLEVLAAASDSLNALASAMVKMikKMQELEREKLTLTAQLQIVRHGEAVXALQHAHTDEEEGDAQKNGHSNGQ 187
                 677889*******************************************9861156777788889999999***************99999998888877665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (245 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       283  (0.0689907); expected 82.0 (0.02)
Passed bias filter:                      156  (0.0380302); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.24u 0.17s 00:00:00.41 Elapsed: 00:00:00.40
# Mc/sec: 808.43
//
Query:       MMETSP1137-20121227|1818_1  [L=413]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.3e-13   49.2   0.4    1.8e-13   48.8   0.2    1.2  1  TIGR03592 yidC_oxa1_cterm: membrane protein insertase, YidC/Oxa1 family


Domain annotation for each model (and alignments):
>> TIGR03592  yidC_oxa1_cterm: membrane protein insertase, YidC/Oxa1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.8   0.2   4.4e-17   1.8e-13      75     190 ..     156     272 ..     129     273 .. 0.81

  Alignments for each domain:
  == domain 1    score: 48.8 bits;  conditional E-value: 4.4e-17
   TIGR03592  75 LiQmPillaLyavllrsie......lrkapflwiedlsspdptveatiallaiyilpvlaglttflqqkls....apkpadpa..qqkimlyimpvmflfmflffpaglllYwvvsnlftilqqliin 190
                 ++  P++++++ ++ r++       l++  +lw++dl+++dp          + +lpv+  +t+f++  +     +++++d++  + +++++   v+++ m++++ +g+ +Yw+++n+f+++q  +++
  MMETSP1137-20121227|1818_1 156 VVGAPVWISFFFTV-RKMVlrdgvgLNEGGILWFTDLTAADP----------YCVLPVVTSATFFAMISMGelgqTQQSQDSTqqTFRMVMKGAAVLMIPMTMWMESGIFVYWFTANTFSLTQAALLR 272
                 5778*********9.4444133444679999***********..........99******999999999987765333322223377889999999***************************98875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (413 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       118  (0.0287665); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.29u 0.14s 00:00:00.43 Elapsed: 00:00:00.49
# Mc/sec: 1112.48
//
Query:       MMETSP1137-20121227|1819_1  [L=331]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.037   11.7   0.0      0.064   10.9   0.0    1.3  1  TIGR00080 pimt: protein-L-isoaspartate O-methyltransferase


Domain annotation for each model (and alignments):
>> TIGR00080  pimt: protein-L-isoaspartate O-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   1.6e-05     0.064      64      98 ..     131     165 ..     122     169 .. 0.87

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 1.6e-05
   TIGR00080  64 hmvakmlelLelkagakvLeiGtGsGYqaavlael 98 
                 ++  +++e+L  +a   vLeiG+GsG + a la l
  MMETSP1137-20121227|1819_1 131 YIADAIVEMLRPHASGTVLEIGSGSGQHIAHLAPL 165
                 5667788999999999*************999976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (331 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       104  (0.0253535); expected 82.0 (0.02)
Passed bias filter:                      101  (0.0246221); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.25u 0.21s 00:00:00.46 Elapsed: 00:00:00.34
# Mc/sec: 1284.95
//
Query:       MMETSP1137-20121227|1820_1  [L=79]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (79 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        35  (0.00853242); expected 82.0 (0.02)
Passed bias filter:                       29  (0.00706972); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.14s 00:00:00.29 Elapsed: 00:00:00.38
# Mc/sec: 274.40
//
Query:       MMETSP1137-20121227|1821_1  [L=870]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      3e-75  251.8   0.0    6.2e-75  250.8   0.0    1.4  1  TIGR00955 3a01204: pigment precursor permease
    2.9e-61  205.2   0.1    2.9e-61  205.2   0.0    1.5  2  TIGR00956 3a01205: pleiotropic drug resistance family protein
    9.2e-29   98.6   0.1    1.4e-28   97.9   0.0    1.2  1  TIGR02857 CydD: thiol reductant ABC exporter, CydD subunit
    6.2e-24   82.5   0.0      9e-24   82.0   0.0    1.2  1  TIGR00972 3a0107s01c2: phosphate ABC transporter, ATP-binding protein
    1.6e-23   81.3   0.3    2.4e-23   80.7   0.2    1.1  1  TIGR01188 drrA: daunorubicin resistance ABC transporter, ATP-binding protein
    2.1e-23   80.9   0.1    3.4e-23   80.3   0.1    1.3  1  TIGR02673 FtsE: cell division ATP-binding protein FtsE
    3.2e-23   79.9   0.2    5.5e-23   79.1   0.2    1.3  1  TIGR01842 type_I_sec_PrtD: type I secretion system ATPase
      4e-23   79.8   0.0    6.7e-23   79.1   0.0    1.3  1  TIGR03608 L_ocin_972_ABC: putative bacteriocin export ABC transporter, lactococcin 972 group
    2.6e-22   77.3   0.1    4.4e-22   76.5   0.1    1.2  1  TIGR03864 PQQ_ABC_ATP: ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system
    4.6e-21   72.6   0.4    4.6e-21   72.6   0.3    2.2  3  TIGR03375 type_I_sec_LssB: type I secretion system ATPase
    5.2e-21   73.0   0.0    8.1e-21   72.4   0.0    1.2  1  TIGR02315 ABC_phnC: phosphonate ABC transporter, ATP-binding protein
    5.9e-21   73.0   0.2    9.1e-21   72.4   0.1    1.2  1  TIGR00960 3a0501s02: type II secretory pathway family protein
    9.2e-21   72.3   0.1    1.5e-20   71.6   0.0    1.2  1  TIGR02982 heterocyst_DevA: ABC exporter ATP-binding subunit, DevA family
    1.8e-20   71.3   0.1    2.6e-20   70.8   0.1    1.1  1  TIGR02142 modC_ABC: molybdate ABC transporter, ATP-binding protein
    2.2e-20   70.8   0.0    3.6e-20   70.1   0.0    1.2  1  TIGR03873 F420-0_ABC_ATP: proposed F420-0 ABC transporter, ATP-binding protein
    2.2e-20   71.0   0.1    3.4e-20   70.4   0.0    1.2  1  TIGR03265 PhnT2: putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein
    3.5e-20   70.3   0.3    5.8e-20   69.6   0.2    1.2  1  TIGR03410 urea_trans_UrtE: urea ABC transporter, ATP-binding protein UrtE
    5.6e-20   69.5   0.1      8e-20   69.0   0.1    1.1  1  TIGR01187 potA: polyamine ABC transporter, ATP-binding protein
    6.5e-20   69.2   0.4    1.1e-19   68.4   0.3    1.3  1  TIGR01166 cbiO: cobalt ABC transporter, ATP-binding protein
    3.8e-19   66.5   2.3    4.8e-18   62.9   0.1    1.9  2  TIGR02868 CydC: thiol reductant ABC exporter, CydC subunit
    6.2e-19   66.3   0.1      1e-18   65.6   0.0    1.2  1  TIGR00968 3a0106s01: sulfate ABC transporter, ATP-binding protein
    3.6e-18   63.0   0.1    3.6e-18   63.0   0.0    1.5  2  TIGR03796 NHLM_micro_ABC1: NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein
    3.6e-18   63.6   0.1    5.3e-18   63.0   0.1    1.1  1  TIGR03258 PhnT: 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT
    8.3e-17   59.5   0.1    1.3e-16   58.8   0.1    1.2  1  TIGR03411 urea_trans_UrtD: urea ABC transporter, ATP-binding protein UrtD
    1.9e-16   57.8   0.1    3.1e-16   57.1   0.0    1.3  1  TIGR02314 ABC_MetN: D-methionine ABC transporter, ATP-binding protein
      2e-16   58.1   0.1    3.3e-16   57.4   0.1    1.2  1  TIGR01277 thiQ: thiamine ABC transporter, ATP-binding protein
    3.2e-16   56.8   0.1    5.2e-16   56.1   0.1    1.3  1  TIGR02203 MsbA_lipidA: lipid A export permease/ATP-binding protein MsbA
    3.3e-16   57.3   0.1    5.6e-16   56.5   0.0    1.3  1  TIGR01978 sufC: FeS assembly ATPase SufC
    5.7e-16   56.6   0.1    8.2e-16   56.1   0.0    1.2  1  TIGR01184 ntrCD: nitrate ABC transporter, ATP-binding proteins C and D
    5.9e-16   56.7   0.2      1e-15   55.9   0.1    1.3  1  TIGR03771 anch_rpt_ABC: anchored repeat-type ABC transporter, ATP-binding subunit
    1.4e-15   54.8   0.0    2.6e-15   53.9   0.0    1.3  1  TIGR02204 MsbA_rel: ABC transporter, permease/ATP-binding protein
    3.1e-15   54.1   0.1    5.6e-15   53.3   0.1    1.3  1  TIGR02211 LolD_lipo_ex: lipoprotein releasing system, ATP-binding protein
    5.1e-15   53.6   0.5    8.4e-15   52.9   0.4    1.2  1  TIGR03740 galliderm_ABC: lantibiotic protection ABC transporter, ATP-binding subunit
    6.1e-15   52.3   0.1    9.2e-15   51.7   0.0    1.2  1  TIGR00958 3a01208: antigen peptide transporter 2
    6.6e-15   53.2   0.1      1e-14   52.6   0.1    1.1  1  TIGR03522 GldA_ABC_ATP: gliding motility-associated ABC transporter ATP-binding subunit GldA
      7e-15   52.4   1.0      9e-15   52.0   0.1    1.5  2  TIGR03797 NHLM_micro_ABC2: NHLM bacteriocin system ABC transporter, ATP-binding protein
    7.5e-15   53.0   0.0    1.2e-14   52.3   0.0    1.2  1  TIGR01189 ccmA: heme ABC exporter, ATP-binding protein CcmA
    1.3e-13   48.0   0.0    2.6e-13   47.0   0.0    1.4  1  TIGR01846 type_I_sec_HlyB: type I secretion system ATPase
    1.6e-13   46.2   0.0    2.3e-13   45.8   0.0    1.1  1  TIGR01257 rim_protein: rim ABC transporter
    2.7e-13   47.7   0.0    4.3e-13   47.0   0.0    1.2  1  TIGR02770 nickel_nikD: nickel import ATP-binding protein NikD
      3e-13   47.4   0.3    3.7e-12   43.8   0.2    2.0  1  TIGR03005 ectoine_ehuA: ectoine/hydroxyectoine ABC transporter, ATP-binding protein EhuA
    8.5e-13   45.5   0.0    1.4e-12   44.8   0.0    1.2  1  TIGR01193 bacteriocin_ABC: ABC-type bacteriocin transporter
    9.1e-13   46.1   0.0    1.8e-12   45.1   0.0    1.4  1  TIGR02769 nickel_nikE: nickel import ATP-binding protein NikE
    5.7e-12   43.4   0.3    4.2e-11   40.6   0.2    2.1  1  TIGR02324 CP_lyasePhnL: phosphonate C-P lyase system protein PhnL
    3.4e-11   40.5   0.1    5.9e-11   39.7   0.1    1.3  1  TIGR01288 nodI: nodulation ABC transporter NodI
      6e-11   39.9   0.0    9.3e-11   39.2   0.0    1.1  1  TIGR01186 proV: glycine betaine/L-proline transport ATP binding subunit
    9.2e-11   39.5   0.8    2.4e-07   28.3   0.0    2.2  2  TIGR02323 CP_lyasePhnK: phosphonate C-P lyase system protein PhnK
    2.2e-10   37.5   0.1    3.2e-07   27.1   0.0    2.1  2  TIGR03269 met_CoM_red_A2: methyl coenzyme M reductase system, component A2
    4.3e-10   36.5   1.3    2.9e-09   33.7   1.1    1.7  1  TIGR02633 xylG: D-xylose ABC transporter, ATP-binding protein
    7.9e-10   35.7   0.1    5.6e-06   23.0   0.0    2.2  1  TIGR03719 ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family
    1.1e-09   35.2   0.0    1.7e-09   34.6   0.0    1.2  1  TIGR01192 chvA: glucan exporter ATP-binding protein
    1.7e-09   34.2   0.6      3e-05   20.2   0.1    2.1  2  TIGR00630 uvra: excinuclease ABC subunit A
    4.3e-09   32.2   0.1    6.4e-09   31.6   0.0    1.2  1  TIGR00957 MRP_assoc_pro: multi drug resistance-associated protein (MRP)
    5.8e-08   29.9   0.5    2.2e-07   28.0   0.3    1.8  1  TIGR03415 ABC_choXWV_ATP: choline ABC transporter, ATP-binding protein
    1.3e-06   24.9   0.5    3.2e-06   23.7   0.0    1.6  2  TIGR00954 3a01203: peroxysomal long chain fatty acyl transporter
     0.0013   14.5   0.0     0.0019   14.0   0.0    1.1  1  TIGR03348 VI_IcmF: type VI secretion protein IcmF
     0.0032   12.7   0.0     0.0046   12.2   0.0    1.1  1  TIGR01271 CFTR_protein: cystic fibrosis transmembrane conductor regulator (CFTR)
  ------ inclusion threshold ------
      0.011   12.6   0.0      0.017   12.0   0.0    1.2  1  TIGR02788 VirB11: P-type DNA transfer ATPase VirB11


Domain annotation for each model (and alignments):
>> TIGR00955  3a01204: pigment precursor permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  250.8   0.0   8.7e-77   6.2e-75      30     488 ..     234     691 ..     207     719 .. 0.79

  Alignments for each domain:
  == domain 1    score: 250.8 bits;  conditional E-value: 8.7e-77
   TIGR00955  30 alarkkpekellknvsGvaksGellAvlGsSGaGKtTLlnalafrsekglkvsgdvllnGekveakemraisayvqqddlfiptltvrehLmfsahlrlkrrltkkekrerveevleelgLrkcadtrigvpgrvkglSgGerkRlalaselltdPilLfcDEPTsGLDsfsaasvvkvLkklaqkgktviltiHQPsselfelfdkiillae.GrvvylGspeeavkffselglpcPenynpadFvlkvlavepgseee...sretiekicd..aeaksklsreveentnlasgkekklvkdseneekik..ykasfltqflvllkRsllsvlrdplllkvrllqvivvavligliylgqeltqkgvqni.ng..alFllltemtFqtvfavinvftaelpvflREtasglYrlsaYylaktlaelPlliilpllflsivYwmiglksgalkfltalllvvlvanvats 488
                  l+ kk+ k++lk++sG + +  + Av+G+SG GKtT +na+a+r + g    g v +nG   + ++  +  ++v qd+++   ltv+++L ++a lrl++++ +  k+e+v  v++ lgL++ +dt++g ++ ++glSgG++kR+ ++ el+  P++Lf+DEPTsGLD +    + +vL  l ++g t+i++iHQP   +f+ f++++ll e Gr vy G++  + ++f++lg++ Pe +npad++++v    + ++ +   + +++e      ae   k +++++  t+ ++g  +   +++   +  +   + +  t +++l  R++ +v      l   +l  ivv++++++ ++  e +  g  n+ ng   +++++  +t+   ++  +       v+ RE++sg+  + a + a t+ +  ++++++++f  i+Y +++  ++++ +++    ++l  +++t+
  MMETSP1137-20121227|1821_1 234 GLTLKKSGKRVLKGISGRFPPRSMSAVMGASGCGKTTFMNAIATRAPYGNVE-GVVKINGVVDGLEKAGNHVGFVPQDNIMHANLTVYQNLLYNALLRLPKTMETVVKEEQVARVIKVLGLSHVQDTLVGNEE-KRGLSGGQKKRVNIGMELVMMPSILFMDEPTSGLDGAATIALARVLSLLRKSGITIICVIHQPRWAVFKEFTHLLLLGEgGRQVYCGEAGLLEPYFKTLGFTRPEGENPADWMIDVCCGLEPRKLAdgtVDKEFECPRSlfAEWXAKHAKHALXPTSRWNGGDAARSQPVAAGNPLQrrPTLPLRTAVYYLTGRAFRQVSVVD--LIFTVLTLIVVGIVLSVGNIISEFSWGGLPNRlNGaqLIYAIIIATTHRIDYGDSK------VVLDREANSGISPV-AIFFAMTIKTYATVFVKAFAFSFITYILASPLQNFVVYFVSWYGLTL-WWAGTA 691
                 45566779***************************************99766.78***************************************************************************776.6****************************************************************************7637***********************************999988887744322333322221022334444444555555555554455555555544422456678899999999998875433..33344566677777777777777777777654244113566666666666665544......47789999998665.667799***********************999999998877654443.344444 PP

>> TIGR00956  3a01205: pleiotropic drug resistance family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  205.2   0.0   4.2e-63   2.9e-61     769    1021 ..     235     482 ..     188     492 .. 0.88
   2 ?   -4.0   0.8       5.9   4.2e+02     491     530 ..     635     674 ..     553     686 .. 0.75

  Alignments for each domain:
  == domain 1    score: 205.2 bits;  conditional E-value: 4.2e-63
   TIGR00956  769 vkikkekrvlLdevdGwvkPGkltALmGasGAGkttLlnvLaeRvttGvitegdrlvng.rkldssFqRsiGYvqqqDlHletstvreaLrfsAylRqpkevskkekneyveevikllelesyadAvvGvpGe.GLnveqRkrltigveLvAkPklllFlDePtsGLDsqtawsivkllrkladaGqailCtiHqPsailleeFDrLLllqkGGktvYfGdlGensktlieYFekhGaekcpeeanPAewmLevi 1021
                  + +kk  +++L+ ++G + P ++ A+mGasG Gktt +n++a R   G ++ g + +ng  +  +     +G+v q+++  ++ tv   L + A lR pk + +  k+e v +vik+l+l + +d +vG   + GL+  q+kr+ ig+eLv  P ++lF+DePtsGLD  ++ ++ ++l  l ++G +i+C iHqP   +++eF +LLll  GG+ vY G+ G     l  YF++ G ++ pe +nPA+wm++v 
  MMETSP1137-20121227|1821_1  235 LTLKKSGKRVLKGISGRFPPRSMSAVMGASGCGKTTFMNAIATRAPYGNVE-GVVKINGvVDGLEKAGNHVGFVPQDNIMHANLTVYQNLLYNALLRLPKTMETVVKEEQVARVIKVLGLSHVQDTLVGNEEKrGLSGGQKKRVNIGMELVMMP-SILFMDEPTSGLDGAATIALARVLSLLRKSGITIICVIHQPRWAVFKEFTHLLLLGEGGRQVYCGEAGL----LEPYFKTLGFTR-PEGENPADWMIDVC 482 
                  56899999*******************************************.666556514445666789***********************************************************99888********************.9*****************************************************************994....557******987.8999********96 PP

  == domain 2    score: -4.0 bits;  conditional E-value: 5.9
   TIGR00956 491 yhPsadalasilselPvkliesvvfniilyflvnlrreag 530
                   P+a  +a ++    + ++++ +f++i+y l    ++  
  MMETSP1137-20121227|1821_1 635 ISPVAIFFAMTIKTYATVFVKAFAFSFITYILASPLQNFV 674
                 5688888888888888888888888888888765444443 PP

>> TIGR02857  CydD: thiol reductant ABC exporter, CydD subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.9   0.0     2e-30   1.4e-28     301     520 ..     209     431 ..     188     439 .. 0.82

  Alignments for each domain:
  == domain 1    score: 97.9 bits;  conditional E-value: 2e-30
   TIGR02857 301 ldaeeqpeaekapltaaassslelenvsvayegrk.palkevsltvepgelvalvGaSGaGKstllklllgfve..pteGailvngaelaeldadswrkqiawvpQkPllfeg.tvaenirlarkdaseaevkealeragldelvkalpqgl..eteiG.ergagLSgGqrqRlaLArallrdapllllDEPtahLDaeteaevlealrela.egrtvllvaHrlala 520
                  +   +   ++ + ++a+s ++e+e+v ++ + +   +lk++s +++p+++ a++GaSG+GK+t +++++  ++    eG +++ng+ ++ l+++   +++++vpQ  ++ ++ tv +n+         + ++ ++++ ++++++k l+  +  +t +G e+ +gLSgGq++R+ +   l+   ++l +DEPt+ LD ++  ++ + l  l  +g t++ v H++ +a
  MMETSP1137-20121227|1821_1 209 AQ-DVNSIGGEYE-HKAESVEIEFEGVGLTLKKSGkRVLKGISGRFPPRSMSAVMGASGCGKTTFMNAIATRAPygNVEGVVKINGV-VDGLEKA--GNHVGFVPQDNIMHANlTVYQNLLYNALLRLPKTMETVVKEEQVARVIKVLGLSHvqDTLVGnEEKRGLSGGQKKRVNIGMELVMMPSILFMDEPTSGLDGAATIALARVLSLLRkSGITIICVIHQPRWA 431
                 33.2333333333.4444569****999988555556*********************************988522458********.8888866..99***********8655******************************998765433399999345789************************************9999999999878999999****9986 PP

>> TIGR00972  3a0107s01c2: phosphate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.0   0.0   1.3e-25     9e-24      12     203 ..     240     428 ..     229     444 .. 0.87

  Alignments for each domain:
  == domain 1    score: 82.0 bits;  conditional E-value: 1.3e-25
   TIGR00972  12 gekealkdvnleikknkvtaliGpsGcGkstllrslnrlndlveevrieGkvllegkdiydkkldvvelrkkvGmvfqkpnpfp.msiydnvayg..lrlkgikdkkeldeiveesLkkaalwdevkdkl..kksalsLsGGqqqrlciaralavePevlLlDePtsaLDpiatekieeliqeLkkk.ytivivthnm 203
                 + k++lk ++  ++ +++ a++G sGcGk+t++   n +    +  ++eG v ++g  ++d      +  ++vG v q     +  ++y+n+ y   lrl ++ +  + +e v + +k  +l  +v+d l  +++  +LsGGq++r+ i   l + P +l +DePts LD  at  +  +++ L+k+ +ti+ v h+ 
  MMETSP1137-20121227|1821_1 240 SGKRVLKGISGRFPPRSMSAVMGASGCGKTTFM---NAIATRAPYGNVEGVVKING--VVDG---LEKAGNHVGFVPQDNIMHAnLTVYQNLLYNalLRLPKTMETVVKEEQVARVIKVLGLS-HVQDTLvgNEEKRGLSGGQKKRVNIGMELVMMPSILFMDEPTSGLDGAATIALARVLSLLRKSgITIICVIHQP 428
                 67899***************************6...56677888899***999887..4555...566789*******88776559********96678888888888899999999999998.9***9944567789**********************************************9998*******985 PP

>> TIGR01188  drrA: daunorubicin resistance ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.7   0.2   3.4e-25   2.4e-23      13     182 ..     249     426 ..     240     429 .. 0.86

  Alignments for each domain:
  == domain 1    score: 80.7 bits;  conditional E-value: 3.4e-25
   TIGR01188  13 nlkveegevfglLGPnGAGKtttikmLttllkPdsGtarvaGyDvvrepdevRrsigvvpqkasvdedLtarenlellgel...yglpkkeaeeraeellelvelkeaadkkvkt.....ysgGmrrrlelaasliaqPevlfLDEPtiGLDprtrraiwdlieelkkegvtilltth 182
                 + + +  ++ +++G  G GKtt ++ ++t  +  + +++v+   vv   +++ +++g vpq+  +  +Lt ++nl   + l     ++  ++ee+++++++++ l + +d  v++     +sgG+++r+++++ l+  P++lf+DEPt+GLD  +  a+ ++++ l+k+g+ti+   h
  MMETSP1137-20121227|1821_1 249 SGRFPPRSMSAVMGASGCGKTTFMNAIATRAPYGNVEGVVKINGVVDGLEKAGNHVGFVPQDNIMHANLTVYQNLLYNALLrlpKTMETVVKEEQVARVIKVLGLSHVQDTLVGNeekrgLSGGQKKRVNIGMELVMMPSILFMDEPTSGLDGAATIALARVLSLLRKSGITIICVIH 426
                 55556667889******************998887777777778******************************9776654222245556799***************9999964333339****************************************************98766 PP

>> TIGR02673  FtsE: cell division ATP-binding protein FtsE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.3   0.1   4.9e-25   3.4e-23       2     198 ..     228     429 ..     227     444 .. 0.83

  Alignments for each domain:
  == domain 1    score: 80.3 bits;  conditional E-value: 4.9e-25
   TIGR02673   2 ielekvskeya.agveaLkdvslkiekgeflfltGasGaGkttllklllgaek..psrGevevagedvarlrerelpllRrkigvvfqDfkllkdrtvlenvala..levrgkkeeei.qkrveevlelvgledkakal.....peelsgGeqqRvaiaRaivnkPelllaDePtGnlDdelserildllkelnkrGttvivathdee 198
                 ie+e v ++ + +g ++Lk +s ++ ++++  ++GasG Gktt+++ + +++     +G v+++g  v       l +   ++g v qD+ +  + tv++n+     l++ ++ e+ + +++v +v++++gl++ +++l      + lsgG ++Rv i   +v  P++l  DePt  lD + +  + ++l+ l k+G+t+i + h+ +
  MMETSP1137-20121227|1821_1 228 IEFEGVGLTLKkSGKRVLKGISGRFPPRSMSAVMGASGCGKTTFMNAIATRAPygNVEGVVKINGV-VD-----GLEKAGNHVGFVPQDNIMHANLTVYQNLLYNalLRLPKTMETVVkEEQVARVIKVLGLSHVQDTLvgneeKRGLSGGQKKRVNIGMELVMMPSILFMDEPTSGLDGAATIALARVLSLLRKSGITIICVIHQPR 429
                 67777777776467899*******************************988752256888888884.33.....44556789*******************965422566555555442689************9987622211456**********************************************************865 PP

>> TIGR01842  type_I_sec_PrtD: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.1   0.2   7.7e-25   5.5e-23     316     534 ..     227     450 ..     218     458 .. 0.86

  Alignments for each domain:
  == domain 1    score: 79.1 bits;  conditional E-value: 7.7e-25
   TIGR01842 316 elevenvslvppeekkktlkgisfalkaGealaiiGpsgsGkssLarllvGvwl..pasGsvrlDgadlkqwdretlGksiGYlPqd.veLfeGtvaeni...aRfeenadaekvieaaklagvhelilrlpkGYdteigegG.aaLsgGqrqRiaLaRalygdPklvvLDePnanLDeeGeqalakalkelkarkitvvvithrp..sllelvdkilvlkdGalkaf 534
                 e+e e v l+  ++ k++lkgis +  + ++ a++G+sg Gk++ +  +    +  +++G v+++g+  +    e+ G+++G++Pqd +   + tv +n+   a ++   + e v++  ++a v   +l l +  dt +g++   +LsgGq++R+ +   l  +P ++ +DeP + LD +  +ala+ l  l++ +it++ + h+p  ++ +   ++l+l +G  +++
  MMETSP1137-20121227|1821_1 227 EIEFEGVGLTLKKSGKRVLKGISGRFPPRSMSAVMGASGCGKTTFMNAIATRAPygNVEGVVKINGVV-D--GLEKAGNHVGFVPQDnIMHANLTVYQNLlynALLRLPKTMETVVKEEQVARVIK-VLGLSHVQDTLVGNEEkRGLSGGQKKRVNIGMELVMMPSILFMDEPTSGLDGAATIALARVLSLLRKSGITIICVIHQPrwAVFKEFTHLLLLGEGGRQVY 450
                 6777888888889999********************************99876622689*****9973.3..46889*********9455567799999755545555569999**********98.589**********865168**********************************************************873358889999999999877776 PP

>> TIGR03608  L_ocin_972_ABC: putative bacteriocin export ABC transporter, lactococcin 972 group
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.1   0.0   9.5e-25   6.7e-23       5     195 ..     236     429 ..     233     439 .. 0.83

  Alignments for each domain:
  == domain 1    score: 79.1 bits;  conditional E-value: 9.5e-25
   TIGR03608   5 skkfkdkeilkklslkiekGelvaivGesGsGKstlLnilgllekkd..sgkvilegkekaklkskkaskllreklgylFqnfaLlenetveenlela..lklkk.kskkekekkkkevlekvglekklkkkiye.....lsgGekqRvalarillkeselilADEPtgsLDkknreevlellkelkeegktiiivtHdpe 195
                 + k++ k++lk +s ++   ++ a++G sG+GK+t++n +++   +   +g v ++g            +   +++g++ q+  +  n tv +nl     l l k +++  ke+++ +v++ +gl++ +++ + +     lsgG+k+Rv +   l+  +++++ DEPt+ LD     ++ ++l+ l+++g tii+v H+p 
  MMETSP1137-20121227|1821_1 236 TLKKSGKRVLKGISGRFPPRSMSAVMGASGCGKTTFMNAIATRAPYGnvEGVVKINGVV-------DGLEKAGNHVGFVPQDNIMHANLTVYQNLLYNalLRLPKtMETVVKEEQVARVIKVLGLSHVQDTLVGNeekrgLSGGQKKRVNIGMELVMMPSILFMDEPTSGLDGAATIALARVLSLLRKSGITIICVIHQPR 429
                 56778899*********************************998765225778888877.......334456799*******************97541134434034457999999********998877664223334**********************************************************986 PP

>> TIGR03864  PQQ_ABC_ATP: ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.5   0.1   6.2e-24   4.4e-22      12     191 ..     240     426 ..     230     452 .. 0.85

  Alignments for each domain:
  == domain 1    score: 76.5 bits;  conditional E-value: 6.2e-24
   TIGR03864  12 gkrralddvsltvakgefvaLLGpnGaGkstLfsll.trL.yeakegeikvaGldlrrapkealarlGvvfqqstlDldlsveqnlryhaaLh...Glsraeaeerieealarlglaeraeekv.....reLnGGhrrrveiarallhePklLLlDeatvGLDiesraalveevrelvreeglsvLWath 191
                 + +r+l+++s + ++ +++a++G  G Gk+t ++ + tr  y + eg +k++G+   +  ++a +++G v q++ +  +l+v qnl y a L+    +     ee+++++++ lgl++ +++ v     r L+GG+++rv+i   l+  P++L +De+t GLD ++  al + v +l r++g++++   h
  MMETSP1137-20121227|1821_1 240 SGKRVLKGISGRFPPRSMSAVMGASGCGKTTFMNAIaTRApYGNVEGVVKINGVV--DGLEKAGNHVGFVPQDNIMHANLTVYQNLLYNALLRlpkTMETVVKEEQVARVIKVLGLSHVQDTLVgneekRGLSGGQKKRVNIGMELVMMPSILFMDEPTSGLDGAATIALAR-VLSLLRKSGITIICVIH 426
                 56899***************************9766255448899********75..55667889*************************99533367777788999999999999998776543333388*********************************99988865.66788899999987777 PP

>> TIGR03375  type_I_sec_LssB: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0       2.7   1.9e+02     285     321 ..     165     202 ..     164     218 .. 0.57
   2 !   72.6   0.3   6.4e-23   4.6e-21     462     662 ..     224     428 ..     208     450 .. 0.86
   3 ?   -2.2   1.1       2.8     2e+02     267     285 ..     564     582 ..     560     589 .. 0.88

  Alignments for each domain:
  == domain 1    score: -2.2 bits;  conditional E-value: 2.7
   TIGR03375 285 iggplv.lvplvavplvllvglllqkplsklaeeslre 321
                 i+ p++ ++ +va++++ll ++++ k+ +k +e+ +++
  MMETSP1137-20121227|1821_1 165 IAMPVAaFIIIVALVVLLLGSYCMAKRRNKKMEARSAA 202
                 55665415666666666666677777666666655443 PP

  == domain 2    score: 72.6 bits;  conditional E-value: 6.4e-23
   TIGR03375 462 lkGeielknvsfkYpeeekaaLknvslkikpGekvaiiGriGsGKstllklllgl..yepteGsvlldgvdirqidpadlrrnigyvpqdvtLfyG.tlrdNialgapaaedeellraaelaGvtefvkkh..pkGldlqig.erGesLSgGQrqavalaRallkdppillLDEPtsalDnsseekllerLkella.dkTlvlvtHrt 662
                  + eie++ v ++ +++ k +Lk +s +  p +  a++G  G+GK+t ++ ++    y   eG v+++gv ++ +++    +++g+vpqd+ + +  t+ +N+ ++a     +++  +++   v +++k    ++  d+ +g e+ ++LSgGQ++ v +   l++ p+il++DEPts lD ++   l + L+ l + + T++ v H+ 
  MMETSP1137-20121227|1821_1 224 ESVEIEFEGVGLTLKKSGKRVLKGISGRFPPRSMSAVMGASGCGKTTFMNAIATRapYGNVEGVVKINGV-VDGLEK--AGNHVGFVPQDNIMHANlTVYQNLLYNALLRLPKTMETVVKEEQVARVIKVLglSHVQDTLVGnEEKRGLSGGQKKRVNIGMELVMMPSILFMDEPTSGLDGAATIALARVLSLLRKsGITIICVIHQP 428
                 5668*********************************************99986433899*********9.555655..4699*******99876549*********99999999999999999999986511566799997477899********************************************999989********64 PP

  == domain 3    score: -2.2 bits;  conditional E-value: 2.8
   TIGR03375 267 talvDLpfvllfllviali 285
                 +++vDL f++l l+v++++
  MMETSP1137-20121227|1821_1 564 VSVVDLIFTVLTLIVVGIV 582
                 579************9987 PP

>> TIGR02315  ABC_phnC: phosphonate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.4   0.0   1.1e-22   8.1e-21      13     214 ..     240     438 ..     228     458 .. 0.78

  Alignments for each domain:
  == domain 1    score: 72.4 bits;  conditional E-value: 1.1e-22
   TIGR02315  13 ngkqalknvnleikkGelvaviGlsGaGkstllrsinrlveissgsillegkevtklkkkelrklrkkigmifqeynlierltvlenvLsgrlgakstlksllglfseedkekAlelLervglaela..akradqLsGGqqqRvaiaRalaqqpklilaDEPiasLDpksskqvmdllkrinkekgitvivnlHqvdla..kkyad 214
                 +gk++lk ++  + +  + av+G sG Gk+t++ +i       + + +++ + v       l+k+ +++g++ q+  + ++ltv +n+L  +l + +   ++ ++ +ee+ ++ +++L    ++++   ++    LsGGq++Rv i   l+  p++++ DEP++ LD +++ + +  + ++ +++git+i+ +Hq   a  k++++
  MMETSP1137-20121227|1821_1 240 SGKRVLKGISGRFPPRSMSAVMGASGCGKTTFMNAIATRAPYGNVEGVVKINGVV----DGLEKAGNHVGFVPQDNIMHANLTVYQNLLYNALLRLPK--TMETVVKEEQVARVIKVLGLSHVQDTLvgNEEKRGLSGGQKKRVNIGMELVMMPSILFMDEPTSGLDGAAT-IALARVLSLLRKSGITIICVIHQPRWAvfKEFTH 438
                 5899******************************998765543333333333344....6799999**********9************998876554..34456678888888888777777665411566677********************************9765.66777889999***********976553356655 PP

>> TIGR00960  3a0501s02: type II secretory pathway family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.4   0.1   1.3e-22   9.1e-21       2     198 ..     228     428 ..     227     446 .. 0.82

  Alignments for each domain:
  == domain 1    score: 72.4 bits;  conditional E-value: 1.3e-22
   TIGR00960   2 ikfeqvskaykgaaelaldnvtvkiekGelvflvGhsGaGkstllklilgiek..psaGkirvsgqdltklrdrevpflrrqiGivfqdfkllsdrtvydnvala..lri.iGvkgreieervsaalekvGlkdkakal.....PvqlsgGeqqrvaiaravvnkPallladePtgnlddelsrdilelleevnraGttvlvathde 198
                 i+fe v  + k + +  l++++ + +  ++  ++G sG+Gk+t+++ i +++     +G ++++g  +       + +  +++G v qd+ +  + tvy+n+     lr+   +++   ee+v  +++ +Gl++ + +l        lsgG+++rv+i   +v  P++l+ dePt+ ld + +  + ++l  +++ G+t++   h+ 
  MMETSP1137-20121227|1821_1 228 IEFEGVGLTLKKSGKRVLKGISGRFPPRSMSAVMGASGCGKTTFMNAIATRAPygNVEGVVKINGV-VDG-----LEKAGNHVGFVPQDNIMHANLTVYQNLLYNalLRLpKTMETVVKEEQVARVIKVLGLSHVQDTLvgneeKRGLSGGQKKRVNIGMELVMMPSILFMDEPTSGLDGAATIALARVLSLLRKSGITIICVIHQP 428
                 899******9999999*******************************9876541133455555553.333.....445679********************98752244423456666789999*********98876522211567******************************************************999974 PP

>> TIGR02982  heterocyst_DevA: ABC exporter ATP-binding subunit, DevA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.6   0.0   2.1e-22   1.5e-20      17     203 ..     241     429 ..     235     438 .. 0.84

  Alignments for each domain:
  == domain 1    score: 71.6 bits;  conditional E-value: 2.1e-22
   TIGR02982  17 rkqvlfdinleiepgeiviltGpsGsGkttlltligglrsvqeGelkvlgkelkgasekelvqvrrkiGyifqahnllesltaeqnvrmal..elkeklsakeakakaeelleavglee.....rldykpedlsgGqkqrvaiaralvarPklvladePtaaldkksgrevvellqklareqgttillvthdnr 203
                  k+vl+ i+ +  p  +  + G+sG+Gktt+++ i++   +  G+++ +  +++g+  + l +   ++G++ q   ++  lt+ qn+   +   l +++++  ++++++ +++ +gl +       +   + lsgGqk+rv i   lv  P++++ dePt+ ld  ++ ++  +l  l r+ g ti+ v h +r
  MMETSP1137-20121227|1821_1 241 GKRVLKGISGRFPPRSMSAVMGASGCGKTTFMNAIATR--APYGNVEGVV-KINGVV-DGLEKAGNHVGFVPQDNIMHANLTVYQNLLYNAllRLPKTMETVVKEEQVARVIKVLGLSHvqdtlVGNEEKRGLSGGQKKRVNIGMELVMMPSILFMDEPTSGLDGAATIALARVLS-LLRKSGITIICVIHQPR 429
                 5899999999999**********************874..4456666443.456665.46788899********************9876511566778888888999999999999985555444667889************************************99999886.66889*********998 PP

>> TIGR02142  modC_ABC: molybdate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.8   0.1   3.7e-22   2.6e-20      16     193 ..     248     429 ..     236     454 .. 0.73

  Alignments for each domain:
  == domain 1    score: 70.8 bits;  conditional E-value: 3.7e-22
   TIGR02142  16 vdlelpgkgvtalFGrsGsGktslirliaGLtrpdegeivldgevlqdsrkkiilppekRrvgyvFqeArLFpHlsvrenLrYGlkrarae..erri...seekvielLgiehLleRlpgk.....LsGGekqRvaigRAlLssPeLLlmDePLaaLDekrkkeilPyLerlsaelkiPilyvsHsld 193
                 ++ + p + + a+ G+sG+Gkt+++++ia  tr+  g++  +g v  ++     l     +vg+v q+  + + l+v +nL Y      ++  e+ +   + ++vi++Lg++h+ + l+g+     LsGG k+Rv ig  l+  P +L mDeP + LD      +   L  l ++  i i+ v H+  
  MMETSP1137-20121227|1821_1 248 ISGRFPPRSMSAVMGASGCGKTTFMNAIA--TRAPYGNV--EGVVKINGVV-DGLEKAGNHVGFVPQDNIMHANLTVYQNLLYNALLRLPKtmETVVkeeQVARVIKVLGLSHVQDTLVGNeekrgLSGGQKKRVNIGMELVMMPSILFMDEPTSGLDGAATIALARVLSLL-RKSGITIICVIHQPR 429
                 55667788899*****************9..56666653..4555444433.234556679**********************8643333311333411156789*******98766554333334********************************99888777776554.456888888888764 PP

>> TIGR03873  F420-0_ABC_ATP: proposed F420-0 ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.1   0.0   5.1e-22   3.6e-20       7     221 ..     235     454 ..     229     459 .. 0.81

  Alignments for each domain:
  == domain 1    score: 70.1 bits;  conditional E-value: 5.1e-22
   TIGR03873   7 vsvraggrlivddvdvtaPaGaltgllGPnGsGkstllrllaGll..apdaGevdlagadlkalsrrararrvalveqdsdaevplsvrdvv...alGriPhrslfaadsdedaevvdra.larvelssladrdlstlsGGerqrvhlaralaqePklllldePtnhldvsaqlellalvrelaaegvtvvvalhdlnlaa.svcdhvvvl.dgGrvvaaGpp 221
                 +++++ g+ +++++   +P+ ++++++G  G+Gk+t+++ +a        +G v+++g+ + +l++     +v  v qd+  +++l+v + +   al r+P       + ++ a v++ + l++v+ + + + +   lsGG+++rv++   l   P++l++dePt  ld +a ++l ++++ l ++g+t++  +h    a+ +   h+++l +gGr v +G++
  MMETSP1137-20121227|1821_1 235 LTLKKSGKRVLKGISGRFPPRSMSAVMGASGCGKTTFMNAIATRApyGNVEGVVKINGV-VDGLEK--AGNHVGFVPQDNIMHANLTVYQNLlynALLRLPKTMETVVKEEQVARVIKVLgLSHVQDTLVGNEEKRGLSGGQKKRVNIGMELVMMPSILFMDEPTSGLDGAATIALARVLSLLRKSGITIICVIHQPRWAVfKEFTHLLLLgEGGRQVYCGEA 454
                 678889999******************************99976411456788888876.778875..4689****************9986333578888776666655444444433225555556667788999***********************************************************999973456777777357899988875 PP

>> TIGR03265  PhnT2: putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.4   0.0   4.9e-22   3.4e-20      19     194 ..     244     427 ..     235     433 .. 0.82

  Alignments for each domain:
  == domain 1    score: 70.4 bits;  conditional E-value: 4.9e-22
   TIGR03265  19 alkdislsvkkgelvclLGPsGCGkttLLriiaGLek..qdaGaillggrditrlppqkrdyGivfqsYaLfPnltvaeniayG..L.knkklkreevaerveelLelvglsgseekyPgq.....lsGGqqqrvaLaralalsPglLLLDePlsaLDakvrekLreelkklqrklgvttimvthd 194
                 +lk is       + +++G sGCGktt++ +ia      + +G + ++g  +  l  +    G+v q   +  nltv +n+ y   L   k +++   +e+v+++++++gls++++   g      lsGGq++rv ++  l++ P++L++DeP s LD      L + l +l rk g+t i v h+
  MMETSP1137-20121227|1821_1 244 VLKGISGRFPPRSMSAVMGASGCGKTTFMNAIATRAPygNVEGVVKING-VVDGLEKAGNHVGFVPQDNIMHANLTVYQNLLYNalLrLPKTMETVVKEEQVARVIKVLGLSHVQDTLVGNeekrgLSGGQKKRVNIGMELVMMPSILFMDEPTSGLDGAATIALARVL-SLLRKSGITIICVIHQ 427
                 56666666666778899****************8765113445555555.678888999999********************9732223567788888999**********999988765434444**************************************99866.677899*********7 PP

>> TIGR03410  urea_trans_UrtE: urea ABC transporter, ATP-binding protein UrtE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.6   0.2   8.2e-22   5.8e-20      12     194 ..     241     430 ..     231     456 .. 0.77

  Alignments for each domain:
  == domain 1    score: 69.6 bits;  conditional E-value: 8.2e-22
   TIGR03410  12 esevlrdvslevekgevvavlGrngvGkttllkalvgllkv..ksGeielegeditklkpeervkaGiayvpqGreifpkltveenlelgle.alkkk.ekkip.eeiyelFPvl..kemlkRrgGd.....LsGGqqqqlaiaRaLvtePklllLDePteGiqPsiikeiekvikelakekdlaillveqvldf 194
                   +vl+++s + +  +++av+G  g Gktt++ a+ +  +    +G ++++g     ++  e++ + +++vpq   + ++ltv  nl   +   l+k+ e+ ++ e++  +  vl  +++++   G+     LsGGq++ + i+  Lv+ P +l +DePt G+  +    +++v++ l+k+ +++i+ v ++  +
  MMETSP1137-20121227|1821_1 241 GKRVLKGISGRFPPRSMSAVMGASGCGKTTFMNAIATRAPYgnVEGVVKING----VVDGLEKAGNHVGFVPQDNIMHANLTVYQNLLYNALlRLPKTmETVVKeEQVARVIKVLglSHVQDTLVGNeekrgLSGGQKKRVNIGMELVMMPSILFMDEPTSGLDGAATIALARVLSLLRKS-GITIICVIHQPRW 430
                 5689*******************************99887511556666666....467889999*********************9876541444443444442345555555422556666556445555*******************************************999985.8888877655444 PP

>> TIGR01187  potA: polyamine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.0   0.1   1.1e-21     8e-20       1     163 [.     260     430 ..     260     436 .. 0.84

  Alignments for each domain:
  == domain 1    score: 69.0 bits;  conditional E-value: 1.1e-21
   TIGR01187   1 lLGpsGsGkttlLrllaGleel..dsGkilldgedvtevpaekrsvnvvfqsyaLfPhmtveenvafg..Lk....mrkvpkaeikervkeaLelvqlee..fakrkpsqlsGGqrqrvalaravvkkPkiLLlDeplsaLDkkLrdqmqlelkalqeklGitvvlvthDqee 163
                 ++G+sG+Gktt +  +a        +G ++++g+ v        +v+ v q+  +   +tv +n+ +   L+    m+ v k+e  +rv ++L l ++++  +++ +   lsGGq++rv +   +v  P iL++Dep s LD      +   + +l +k Git++ v h  + 
  MMETSP1137-20121227|1821_1 260 VMGASGCGKTTFMNAIATRAPYgnVEGVVKINGV-VDGLEKAGNHVGFVPQDNIMHANLTVYQNLLYNalLRlpktMETVVKEEQVARVIKVLGLSHVQDtlVGNEEKRGLSGGQKKRVNIGMELVMMPSILFMDEPTSGLDGAATIALAR-VLSLLRKSGITIICVIHQPRW 430
                 58**************987654114688888876.5666677789********************9954444222277889999*********998888744699999**********************************998877765.56788999*********8665 PP

>> TIGR01166  cbiO: cobalt ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.4   0.3   1.6e-21   1.1e-19       4     185 ..     241     426 ..     239     429 .. 0.80

  Alignments for each domain:
  == domain 1    score: 68.4 bits;  conditional E-value: 1.6e-21
   TIGR01166   4 eaevlkglnlavergevlallGanGaGkstlllhlnGllrPksGkvlldGeeldysrkgllelrkkvalvlqdpddqlfaa..dvdedvafg.plnlGlseaev..errvrealaavdisgleerpt.....hllsgGekkrvaiagavalrpdvllldePtagldpaGaeqlleilrklreeGktvvisth 185
                 + +vlkg++ ++   ++ a++Ga G+Gk+t+++ ++       G+v  +  +++    gl ++ ++v++v qd    ++ a  +v +++ +  +l l  + + v  e++v   ++++++s++++ ++     + lsgG+kkrv i   +++ p +l++dePt+gld+a +  l+++l+ lr++G t++   h
  MMETSP1137-20121227|1821_1 241 GKRVLKGISGRFPPRSMSAVMGASGCGKTTFMNAIATR--APYGNVE-GVVKINGVVDGLEKAGNHVGFVPQD---NIMHAnlTVYQNLLYNaLLRLPKTMETVvkEEQVARVIKVLGLSHVQDTLVgneekRGLSGGQKKRVNIGMELVMMPSILFMDEPTSGLDGAATIALARVLSLLRKSGITIICVIH 426
                 6789*****************************99864..4445543.23344555689999********775...5555523688888875256777666665345689999999999999886542222278******************************************************9888 PP

>> TIGR02868  CydC: thiol reductant ABC exporter, CydC subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   0.2     0.054       3.8     153     200 ..     168     215 ..     156     224 .. 0.77
   2 !   62.9   0.1   6.7e-20   4.8e-18     329     530 .]     222     428 ..     210     428 .. 0.86

  Alignments for each domain:
  == domain 1    score: 3.8 bits;  conditional E-value: 0.054
   TIGR02868 153 vaaalvlaaallvalvvaplvslraarsaeqalarlrselaaqlldll 200
                 + aa ++++al+v l+    ++ r +++ e++ a+lrs++aaq ++ +
  MMETSP1137-20121227|1821_1 168 PVAAFIIIVALVVLLLGSYCMAKRRNKKMEARSAALRSQYAAQDVNSI 215
                 45666777777777777778899999**************99876665 PP

  == domain 2    score: 62.9 bits;  conditional E-value: 6.7e-20
   TIGR02868 329 asekptlelrdlsvsypgaee.vlkgvsldlepGervavvGasGaGKstLlallaglld..plkGevtldgvsvaslsesevrrvvsvlaqdaHlFdt.tvreNlrlarpdatdeellaaLervgLadwlra..LpdGldtklgeggar.lSGGerqRlalARaLladapvllLDEPtehLDaeteeelledLl.aaeegrtvvlvthrl 530
                 ++e++++e++++    +++ + vlkg+s   +p +  av+GasG+GK+t ++++a   +    +G v ++gv v  l  ++  + v +++qd  + +  tv +Nl+  +     + +++++++ + a+ ++   L +  dt +g++ +r lSGG+++R+ +   L+    +l +DEPt +LD ++  +l + L    ++g t++ v h++
  MMETSP1137-20121227|1821_1 222 KAESVEIEFEGVGLTLKKSGKrVLKGISGRFPPRSMSAVMGASGCGKTTFMNAIATRAPygNVEGVVKINGV-VDGL--EKAGNHVGFVPQDNIMHANlTVYQNLLYNALLRLPKTMETVVKEEQVARVIKVlgLSHVQDTLVGNEEKRgLSGGQKKRVNIGMELVMMPSILFMDEPTSGLDGAATIALARVLSlLRKSGITIICVIHQP 428
                 4467999999999999988888*****************************999876652256899999993.3343..445789*******98886559********99999********999999999875578999****9776544****************************************99987889999999999985 PP

>> TIGR00968  3a0106s01: sulfate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.6   0.0   1.4e-20     1e-18      14     190 ..     243     427 ..     235     445 .. 0.82

  Alignments for each domain:
  == domain 1    score: 65.6 bits;  conditional E-value: 1.4e-20
   TIGR00968  14 qalddvdlevktGslvallGpsGsGkstllrviaGlek..pdsGrilleGrdvtrvkvrdreiGfvfqhyalfkhltvrdniafGleir..kkdkakik.akveellelvqleklgdry.....psqlsGGqrqrvalaralavepqvllldepfgaldakvrkelrawlrklhdevkvttvfvthd 190
                 ++l+ ++   +  s+ a++G sG Gk+t++ +ia      + +G + ++G  v  ++    ++Gfv q+  +   ltv +n+ +   +r  k+ ++ +k ++v +++++++l++++d          lsGGq++rv +   l + p +l++dep + ld      l + l  l  +  +t + v h+
  MMETSP1137-20121227|1821_1 243 RVLKGISGRFPPRSMSAVMGASGCGKTTFMNAIATRAPygNVEGVVKINGV-VDGLEKAGNHVGFVPQDNIMHANLTVYQNLLYNALLRlpKTMETVVKeEQVARVIKVLGLSHVQDTLvgneeKRGLSGGQKKRVNIGMELVMMPSILFMDEPTSGLDGAATIALARVLSLLR-KSGITIICVIHQ 427
                 5788888889999*********************98652256899999997.6677888899*********************997666546555554427899********999987622111457********************************999988888876554.456666767665 PP

>> TIGR03796  NHLM_micro_ABC1: NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.0   0.0     5e-20   3.6e-18     474     684 ..     224     442 ..     189     454 .. 0.78
   2 ?   -3.4   0.2       5.9   4.1e+02     156     213 ..     637     694 ..     624     699 .. 0.75

  Alignments for each domain:
  == domain 1    score: 63.0 bits;  conditional E-value: 5e-20
   TIGR03796 474 LsGkvelrnvtfgysaleapliedfslslkpGqrvAlvGgsGsGkstiaklvaGl..yepwsGeilfDgkpreeiprevlanslalvdqd.ivlfegtvrdnltlwdetip.eedlvrAakDAaihdvilarpggy..eael.aegganlsGGqrqRleiARaLvknPsiLilDEatsaLDaetE...kaidenlrrRgctciivaH..RLstiRdcdeiivl 684
                  s ++e+++v  + ++  + +++++s +  p +  A++G+sG+Gk t    +a    y +++G + ++g+    +  e   n + +v qd i+  + tv +nl l+++ +   + +++ +k+ ++  vi  +   +  ++ + +e+ + lsGGq++R++i   Lv  PsiL +DE ts LD ++     ++ + lr+ g+t+i v H  R +  ++  ++++l
  MMETSP1137-20121227|1821_1 224 ESVEIEFEGVGLTLKKSGKRVLKGISGRFPPRSMSAVMGASGCGKTTFMNAIATRapYGNVEGVVKINGVVD-GL--EKAGNHVGFVPQDnIMHANLTVYQNL-LYNALLRlPKTMETVVKEEQVARVIKVLGLSHvqDTLVgNEEKRGLSGGQKKRVNIGMELVMMPSILFMDEPTSGLDGAATialARVLSLLRKSGITIICVIHqpRWAVFKEFTHLLLL 442
                 45579999999999*************************************99643499**********865.44..456799****9983555578*****9.788877624677888899999988876654431033343588899********************************87652225678899**********995555555665555555 PP

  == domain 2    score: -3.4 bits;  conditional E-value: 5.9
   TIGR03796 156 llllvlaglllvlpglvvpafskifvDeilveeaqewlrplllgllltallqvvltll 213
                  +++ +a  + + ++++v af+  f+ +il +  q+++  ++    lt+   ++ +++
  MMETSP1137-20121227|1821_1 637 PVAIFFAMTIKTYATVFVKAFAFSFITYILASPLQNFVVYFVSWYGLTLWWAGTAQWV 694
                 4556666667788899999999999999999999999999888888888777777665 PP

>> TIGR03258  PhnT: 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.0   0.1   7.5e-20   5.3e-18      14     203 ..     235     431 ..     225     457 .. 0.82

  Alignments for each domain:
  == domain 1    score: 63.0 bits;  conditional E-value: 7.5e-20
   TIGR03258  14 lrvaygarvvlddlsleieaGellallGksGsGkttllravaGfvkadG...GrllvadrdlthlppykrnlallvqnyalfphlkveenvafG..lrarkqskali.aervadalklvqlsdaaarl.....paqlsGGqqqrvalaralvvrpdvllldeplsaldaqlrasvveelkalhrelpeltvlyvthdrdea 203
                 l+++  ++ vl+ +s    +  + a++G sG+Gktt + a+a    + G   G + + +  +  l      ++++ q+  +   l+v++n+ +   lr  k  ++ + +e+va  +k+++ls +   l        lsGGq++rv +   lv+ p +l++dep s ld     ++   l  l +    +t+++v h+   a
  MMETSP1137-20121227|1821_1 235 LTLKKSGKRVLKGISGRFPPRSMSAVMGASGCGKTTFMNAIATRA-PYGnveGVVKINGV-VDGLEKAGNHVGFVPQDNIMHANLTVYQNLLYNalLRLPKTMETVVkEEQVARVIKVLGLSHVQDTLvgneeKRGLSGGQKKRVNIGMELVMMPSILFMDEPTSGLDGAATIALARVLSLLRK--SGITIICVIHQPRWA 431
                 566778999*********************************865.44446677777764.6778888889********************98655787776665551679*******999987655422111678*********************************999999998888865..589*******86555 PP

>> TIGR03411  urea_trans_UrtD: urea ABC transporter, ATP-binding protein UrtD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.8   0.1   1.9e-18   1.3e-16      13     200 ..     240     426 ..     228     436 .. 0.78

  Alignments for each domain:
  == domain 1    score: 58.8 bits;  conditional E-value: 1.9e-18
   TIGR03411  13 dgfkalndlslsveegelrviiGpnGaGkttllDvitGktrpdeGsvlfkgkdltklkeaeiarlGigRkfqkpsvfeeltvlenlelalkadksvlallfarlskeekerieevleligLeeka..dkkaglLshGqkqwLeigmllvqepkllllDePvaGmtdeetektaellkelake.rsvvvveh 200
                  g + l+ +s +  ++++ +++G+ G Gktt++++i+ ++    G+v    k    ++  e a   +g   q   ++ +ltv +nl    +a  ++ +++ + +++e+ +r+ +vl l +++++   +++   Ls Gqk++++igm lv  p++l++DeP++G+  + t   a++l+ l+k+  +++ v h
  MMETSP1137-20121227|1821_1 240 SGKRVLKGISGRFPPRSMSAVMGASGCGKTTFMNAIATRA--PYGNVEGVVKINGVVDGLEKAGNHVGFVPQDNIMHANLTVYQNLLY--NALLRLPKTMETVVKEEQVARVIKVLGLSHVQDTLvgNEEKRGLSGGQKKRVNIGMELVMMPSILFMDEPTSGLDGAATIALARVLSLLRKSgITIICVIH 426
                 56677788888888999*******************9665..55655433332223445566777788889**************975..4455667777777788887777777777666665422566677*******************************************999886246666666 PP

>> TIGR02314  ABC_MetN: D-methionine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.1   0.0   4.4e-18   3.1e-16      12     218 ..     238     447 ..     227     457 .. 0.79

  Alignments for each domain:
  == domain 1    score: 57.1 bits;  conditional E-value: 4.4e-18
   TIGR02314  12 dqgdkkikaldnvslfvpkgqifgvigasgagkstlircvnllekptsgavivdgkdlttlsnaelvkarrqigmifqhfnllssrtvfgnvalp..lelentpkekik.rkvtellalvglsdkkdsypsn.....lsggqkqrvaiaralasepkvllcdeatsaldpattqsilellkeinrrlgltillithe..mdvvkricdevavidkge 218
                 ++++k+   l+ +s   p   +  v+gasg gk+t++  +    +   g+  v+g+   +     l ka  ++g++ q   + +  tv++n+     l l +t +  +k ++v+ ++ ++gls+ +d+   n     lsggqk+rv i   l   p +l+ de ts ld a+t ++  +l  + r+ g+ti+ + h+    v k+  + + + ++g+
  MMETSP1137-20121227|1821_1 238 KKSGKR--VLKGISGRFPPRSMSAVMGASGCGKTTFMNAIAT--RAPYGN--VEGVVKINGVVDGLEKAGNHVGFVPQDNIMHANLTVYQNLLYNalLRLPKTMETVVKeEQVARVIKVLGLSHVQDTLVGNeekrgLSGGQKKRVNIGMELVMMPSILFMDEPTSGLDGAATIALARVLS-LLRKSGITIICVIHQprWAVFKEFTHLLLLGEGGR 447
                 555554..58999999999*****************998865..444454..3555444555668999**********99999999*****86532267777777777525789999999999999998776666669***********************************99888885.77999*******99732467777777666655555 PP

>> TIGR01277  thiQ: thiamine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.4   0.1   4.6e-18   3.3e-16      27     192 ..     258     431 ..     255     449 .. 0.83

  Alignments for each domain:
  == domain 1    score: 57.4 bits;  conditional E-value: 4.6e-18
   TIGR01277  27 vailGesGaGkstllnliaGfl..epasGeikvndkdhtrsapyerpvsmlfqennlfahltvrqni...glGlkpglklnavqkekvedvarqvGiadylerlpee.....lsGGqrqrvalarclvrekpillldepfsaldpklreemlalvkkladekkltlllvthslsda 192
                  a++G sG Gk+t++n ia       ++G +k+n++   ++      v  + q+n + a ltv qn+   +l   p    + v++e+v  v + +G+++  + l ++     lsGGq++rv +   lv    il++dep s ld +     la v  l  +  +t++ v h++  a
  MMETSP1137-20121227|1821_1 258 SAVMGASGCGKTTFMNAIATRApyGNVEGVVKINGVV-DGLEKAGNHVGFVPQDNIMHANLTVYQNLlynALLRLPKTMETVVKEEQVARVIKVLGLSHVQDTLVGNeekrgLSGGQKKRVNIGMELVMMPSILFMDEPTSGLDGAAT-IALARVLSLLRKSGITIICVIHQPRWA 431
                 59*****************864225799******974.455556678999****************944445556777889999***************9999975334556********************************9975.5688899999999*********98754 PP

>> TIGR02203  MsbA_lipidA: lipid A export permease/ATP-binding protein MsbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.1   0.1   7.3e-18   5.2e-16     327     524 ..     223     422 ..     161     446 .. 0.82

  Alignments for each domain:
  == domain 1    score: 56.1 bits;  conditional E-value: 7.3e-18
   TIGR02203 327 rvrGkvefrnvtfrypgddrealdsislkveaGevvalvGrsGsGkstlvnllp.RF.yepdsGeillDgvdladlkLasLRrqvalvsqdvvL.FddtiaenvaYgeleevdeaeveealaaaylkdlvdk..lpeGldtevGengsk.LsGGqRqRlaiaRallkdaPiLiLDeatsaLDneseRlvqaaLerlmkgRttlv 524
                     ++ef+ v  + +++++ +l++is +  +  + a++G sG Gk+t +n ++ R  y + +G + ++gv   d  L++  ++v +v qd ++  + t+ +n+ Y +l  +++  +e+++++ ++  ++    l +  dt vG++  + LsGGq++R+ i   l+    iL +De ts LD  +  ++   L  l k   t++
  MMETSP1137-20121227|1821_1 223 AESVEIEFEGVGLTLKKSGKRVLKGISGRFPPRSMSAVMGASGCGKTTFMNAIAtRApYGNVEGVVKINGVV--D-GLEKAGNHVGFVPQDNIMhANLTVYQNLLYNALLRLPK-TMETVVKEEQVARVIKVlgLSHVQDTLVGNEEKRgLSGGQKKRVNIGMELVMMPSILFMDEPTSGLDGAATIALARVLSLLRKSGITII 422
                 33458*********************************************9886253478889999998873..3.689999********86551688**********977654.567777777777777651155667999**987665********************************9999999888888887766655 PP

>> TIGR01978  sufC: FeS assembly ATPase SufC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.5   0.0   7.9e-18   5.6e-16       8     218 ..     237     442 ..     232     466 .. 0.79

  Alignments for each domain:
  == domain 1    score: 56.5 bits;  conditional E-value: 7.9e-18
   TIGR01978   8 vsvedkeiLkglnlevkkGevhaimGpnGsGkstLskvlaghekyevtsGeiklkgqdlleleveeraraGlflafqapeeipGvsnkeflrsalnavrka.rgeeeldllefekllkeklelleldeelleRslneGfsGGekkrneilqlallePklaiLDeiDsGlDvDalkivaegvnklreeekalliithyerllelikPdvvhvl 218
                 ++   k++Lkg++    +  + a+mG+ G Gk t ++++a +  y  ++G +k++g       v+   +aG +++f    +i   + + +    +na  +  +  e++   e    + + l l +++ +l+  +   G sGG kkr +i   +++ P++  +De  sGlD  a  ++a++++ lr++  +++ + h+ r     + +++ +l
  MMETSP1137-20121227|1821_1 237 LKKSGKRVLKGISGRFPPRSMSAVMGASGCGKTTFMNAIATRAPYGNVEGVVKINGV------VDGLEKAGNHVGFVPQDNIMHANLTVYQNLLYNALLRLpKTMETVVKEEQVARVIKVLGLSHVQDTLVGNEEKRGLSGGQKKRVNIGMELVMMPSILFMDEPTSGLDGAATIALARVLSLLRKSGITIICVIHQPRWAVFKEFTHLLLL 442
                 566789***********************************************9995......4555566777777777777777777666666776653213333333344444455556666667799999999*************9999*******************************************9997655444444444 PP

>> TIGR01184  ntrCD: nitrate ABC transporter, ATP-binding proteins C and D
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.1   0.0   1.2e-17   8.2e-16      14     180 ..     258     433 ..     245     453 .. 0.85

  Alignments for each domain:
  == domain 1    score: 56.1 bits;  conditional E-value: 1.2e-17
   TIGR01184  14 islighsgcgkstllnliaglek..ptsgavileg..keitepgpdrmvvfqnysllpwltvreni.alavdavlrdlskserreiveehielvglreaadk.....rpeqlsggmkqrvaiaralsirpklllldepfgaldaltreelqekllkiveearvtvlmvthdvdeall 180
                  +++g sgcgk+t++n ia  +     +g v+++g    +++ g +   v q+  +   ltv++n+ + a+ +  +++++  ++e v   i+++gl++ +d      +   lsgg k+rv i   l + p +l++dep   ld  +   l  ++l +++++ +t++ v h+   a++
  MMETSP1137-20121227|1821_1 258 SAVMGASGCGKTTFMNAIATRAPygNVEGVVKINGvvDGLEKAGNHVGFVPQDNIMHANLTVYQNLlYNALLRLPKTMETVVKEEQVARVIKVLGLSHVQDTlvgneEKRGLSGGQKKRVNIGMELVMMPSILFMDEPTSGLDGAATIALA-RVLSLLRKSGITIICVIHQPRWAVF 433
                 579****************87642257899****94446999***********************7356888999999999999*************99986222114567********************************99999885.7899**************8777666 PP

>> TIGR03771  anch_rpt_ABC: anchored repeat-type ABC transporter, ATP-binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.9   0.1   1.5e-17     1e-15       9     177 ..     258     432 ..     253     445 .. 0.81

  Alignments for each domain:
  == domain 1    score: 55.9 bits;  conditional E-value: 1.5e-17
   TIGR03771   9 lgllGpnGaGkttllrailglik..vakGsvkvagkssr..kgrreiGyvpqrhefawdfpidveqtvlsGragliGllrrpkkadfaavadalervklteladrpvGe.....lsGGqrqrvlvaralavkpslllldepftGldlpsqellvelfeelagegtailmtthdlaeav 177
                  +++G  G Gktt++ ai +  +  + +G vk++g   +  k+  ++G+vpq   +     + v+q +l     ++     + +++   va  ++   l++++d  vG+     lsGGq++rv +   l + ps+l++dep +Gld  ++  l+ +++ l + g +i+ + h+   av
  MMETSP1137-20121227|1821_1 258 SAVMGASGCGKTTFMNAIATRAPygNVEGVVKINGVVDGleKAGNHVGFVPQDNIMH--ANLTVYQNLLYNALLRLPKTMETVVKE-EQVARVIKVLGLSHVQDTLVGNeekrgLSGGQKKRVNIGMELVMMPSILFMDEPTSGLDGAATIALARVLSLLRKSGITIICVIHQPRWAV 432
                 5789**************9888733578******98765226778*******87654..557888888876655555444443333.4567788888999999999996566669********************************************************9866665 PP

>> TIGR02204  MsbA_rel: ABC transporter, permease/ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.9   0.0   3.7e-17   2.6e-15     335     533 ..     225     426 ..     213     455 .. 0.81

  Alignments for each domain:
  == domain 1    score: 53.9 bits;  conditional E-value: 3.7e-17
   TIGR02204 335 rgeiefeevkfayParpdqkaldgldltvrpGetvalvGPsGaGkstllelll.r.fydPqsGailldGvdlreldpeelrerlalvpqdsalfaa.svleniryGrpdasdeeveaaakaaeadefis..klpeGydtllG.ergvtLsGGqkqriaiarailkdapiLLLdeatsaLdaeseqlvqqaleelmkgrttlv.iah 533
                 + eiefe v ++   ++ + +l+g++ +  p    a++G sG Gk+t ++ +  r  y   +G ++++Gv +  l+  +  +++ +vpqd  + a+  v +n+ y  +    + +e+  k+ + +  i+   l++  dtl+G e+   LsGGqk+r+ i   ++    iL++de ts Ld  +  ++ + l  l k   t++ + h
  MMETSP1137-20121227|1821_1 225 SVEIEFEGVGLTLK-KSGKRVLKGISGRFPPRSMSAVMGASGCGKTTFMNAIAtRaPYGNVEGVVKINGV-VDGLE--KAGNHVGFVPQDNIMHANlTVYQNLLYNALLRLPKTMETVVKEEQVARVIKvlGLSHVQDTLVGnEEKRGLSGGQKKRVNIGMELVMMPSILFMDEPTSGLDGAATIALARVLSLLRKSGITIIcVIH 426
                 46899999999875.56699*****************************987524259***********8.55555..45799**********9874799*****98777777777777777777666511578899*****444567*********************************************9998877762445 PP

>> TIGR02211  LolD_lipo_ex: lipoprotein releasing system, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.3   0.1     8e-17   5.6e-15      16     205 ..     240     431 ..     232     446 .. 0.77

  Alignments for each domain:
  == domain 1    score: 53.3 bits;  conditional E-value: 8e-17
   TIGR02211  16 leievlkgvsleiekgelvaivGssGsGkstllhllggld..kptsGevllkGkelsklssneraklrnkklGfiyqfhhlladftalenvamPlliskkskkea...kerakellekvglekri.....nkkpselsGGerqrvaiaralvnkPklvladePtgnldkktakkifelllelnkekntallvvthdlela 205
                    +vlkg+s +     + a++G+sG Gk+t++  +++       +G v+++G  ++ l    +     +++Gf+ q   + a++t+ +n+   +l++  ++ e+   +e+ +++++ +gl++       n++   lsGG+++rv i   lv  P++++ dePt+ ld +++ ++ ++l  l ++++++++ v h+ + a
  MMETSP1137-20121227|1821_1 240 SGKRVLKGISGRFPPRSMSAVMGASGCGKTTFMNAIATRApyGNVEGVVKINGV-VDGLE---K---AGNHVGFVPQDNIMHANLTVYQNLLYNALLRLPKTMETvvkEEQVARVIKVLGLSHVQdtlvgNEEKRGLSGGQKKRVNIGMELVMMPSILFMDEPTSGLDGAATIALARVL-SLLRKSGITIICVIHQPRWA 431
                 56789*****************************99975411345677777774.23332...2...2469********************999999866555532226677788899999987611122455667********************************99887777666.566788999******98765 PP

>> TIGR03740  galliderm_ABC: lantibiotic protection ABC transporter, ATP-binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.9   0.4   1.2e-16   8.4e-15      12     182 ..     241     426 ..     232     429 .. 0.81

  Alignments for each domain:
  == domain 1    score: 52.9 bits;  conditional E-value: 1.2e-16
   TIGR03740  12 kqavvnnvslkvkknsvygllGpnGaGkstllklltGl..lrktsGeilldgrew.trkdlkkiGsliesPalyenltarenlkvrtlll.......glpesrieevlkivdlentekk.....kakqfslGmkqrlGiaiallnkPkllildePtnGldPlGiqelreliksfpekGitvilssh 182
                  + v++ +s + + +s+ +++G  G+Gk+t +  ++      + +G ++++g      k  +++G + ++  ++ nlt ++nl  ++ll+        ++e+++  v+k+++l++ +       + + +s G k+r+ i + l+  P +l +dePt Gld      l +++  +++ Git+i   h
  MMETSP1137-20121227|1821_1 241 GKRVLKGISGRFPPRSMSAVMGASGCGKTTFMNAIATRapYGNVEGVVKINGVVDgLEKAGNHVGFVPQDNIMHANLTVYQNLLYNALLRlpktmetVVKEEQVARVIKVLGLSHVQDTlvgneEKRGLSGGQKKRVNIGMELVMMPSILFMDEPTSGLDGAATIALARVLSLLRKSGITIICVIH 426
                 5679999**************************99875124678999***99754156778899*9999999999*****9997665432111111157899999****9999987765111115556999**************************************************98766 PP

>> TIGR00958  3a01208: antigen peptide transporter 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.7   0.0   1.3e-16   9.2e-15     468     689 ..     217     445 ..     212     457 .. 0.81

  Alignments for each domain:
  == domain 1    score: 51.7 bits;  conditional E-value: 1.3e-16
   TIGR00958 468 gtlapknleGkveFqdVsFsYPsrpdkpvlkdLtftlepGevvalVGPsGsGKStvaalle..nlYqPtgGqvllDgkplkeydhkylhrkvalVgqEPvlfsg.svreNiaYGltktedeevtaaakaanahdFis..elekgydtevgek.GsqlsgGqkqriAiARALvrkPrvLiLDeAtSALDaeveqllqe...sksaksrtvlliah..rLstvekadkilvlkkg 689
                 g+++ k  + ++eF+ V  +  +++ k+vlk+++    p +  a+ G sG GK t +  +     Y   +G v + g+ +  ++     ++v+ V q+ ++++  +v +N+ Y       +++ +++k+ ++   i+  +l +  dt vg++    lsgGqk+r+ i   Lv  P +L +De tS LD +   +l +     ++++ t++ + h  r  + ++  + l+l +g
  MMETSP1137-20121227|1821_1 217 GEYEHKAESVEIEFEGVGLTL-KKSGKRVLKGISGRFPPRSMSAVMGASGCGKTTFMNAIAtrAPYGNVEGVVKINGV-VDGLEKA--GNHVGFVPQDNIMHANlTVYQNLLYNALLRLPKTMETVVKEEQVARVIKvlGLSHVQDTLVGNEeKRGLSGGQKKRVNIGMELVMMPSILFMDEPTSGLDGAATIALARvlsLLRKSGITIICVIHqpRWAVFKEFTHLLLLGEG 445
                 5666777777899****9997.78999****************************98877511579*********997.7777775..578*********986549*******86665566677777777777766522788999****9651567*********************************77777776544556678899999983345677777777777776 PP

>> TIGR03522  GldA_ABC_ATP: gliding motility-associated ABC transporter ATP-binding subunit GldA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.6   0.1   1.4e-16     1e-14      15     186 ..     242     422 ..     231     430 .. 0.84

  Alignments for each domain:
  == domain 1    score: 52.6 bits;  conditional E-value: 1.4e-16
   TIGR03522  15 qkaldevsfeaekGeivGflGPnGaGkstlmkiltgylkadsGsvavagedvlknslevrkniGylPehnPlyldlyvreylefsaaly...klkgrklkkrveelielvGlkaeqhkkiga.....lskGyrqrvGlakallhdPkvlildePttGldPnqlveirevikeiakdk.tvi 186
                 +++l+ +s +  + ++   +G  G Gk+t m  +++  +       v+ + v++   ++ +++G++P+ n ++ +l v + l ++a l     ++  +++++v+++i+  Gl++ q   +g+     ls G ++rv +   l+  P++l +dePt+Gld    +++ +v+  + k   t+i
  MMETSP1137-20121227|1821_1 242 KRVLKGISGRFPPRSMSAVMGASGCGKTTFMNAIATRAPYGNVEGVVKINGVVDGLEKAGNHVGFVPQDNIMHANLTVYQNLLYNALLRlpkTMETVVKEEQVARVIKVLGLSHVQDTLVGNeekrgLSGGQKKRVNIGMELVMMPSILFMDEPTSGLDGAATIALARVLSLLRKSGiTII 422
                 6788888888889999999*************9998766555444566667899999999*************************988533368888999**************9999887545555999********************************9999999988877641444 PP

>> TIGR03797  NHLM_micro_ABC2: NHLM bacteriocin system ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       5.2   3.7e+02     280     311 ..     169     200 ..     162     215 .. 0.66
   2 !   52.0   0.1   1.3e-16     9e-15     451     639 ..     227     419 ..     219     453 .. 0.81

  Alignments for each domain:
  == domain 1    score: -2.9 bits;  conditional E-value: 5.2
   TIGR03797 280 vavllalvaiavtlvlgllqvrkerklleleg 311
                 va  +++va++v+l+ ++++ ++++k++e ++
  MMETSP1137-20121227|1821_1 169 VAAFIIIVALVVLLLGSYCMAKRRNKKMEARS 200
                 56667777777777777777776666666543 PP

  == domain 2    score: 52.0 bits;  conditional E-value: 1.3e-16
   TIGR03797 451 aievdrvtFrYekdgplvLddvslkiepGefvaivGaSGsGKStllrlLLgFekP...esGsvlyDGqdlekldvqavRrqlGvVLQngrllsg.sileniaggasltldeawea.armagleeDikamPmgl..hTvi.segggtlSGGQrQRlliAralvrkPrillfDEATSALDNrtQaiVsesleklkvtRi 639
                 +ie + v  + +k+g++vL+ +s +  p    a++GaSG+GK t++  +     P    +G v   G  +++l+++    ++G V Q+  + ++ ++++n++ +a l l + +e  +++  ++  ik + ++    T++ +e   +lSGGQ++R+ i   lv  P il++DE TS LD  +  +    l+ l+ + i
  MMETSP1137-20121227|1821_1 227 EIEFEGVGLTLKKSGKRVLKGISGRFPPRSMSAVMGASGCGKTTFMNAIA-TRAPygnVEGVVKINGV-VDGLEKA--GNHVGFVPQDNIMHANlTVYQNLLYNALLRLPKTMETvVKEEQVARVIKVLGLSHvqDTLVgNEEKRGLSGGQKKRVNIGMELVMMPSILFMDEPTSGLDGAATIALARVLSLLRKSGI 419
                 68889999999***********************************9865.45563336899***997.8999876..589******9887765489*********9999998852688999999999887642268884577889********************************9876555555544443333 PP

>> TIGR01189  ccmA: heme ABC exporter, ATP-binding protein CcmA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.3   0.0   1.6e-16   1.2e-14       5     186 ..     234     427 ..     230     436 .. 0.82

  Alignments for each domain:
  == domain 1    score: 52.3 bits;  conditional E-value: 1.6e-16
   TIGR01189   5 elaveRgervlleglsfelaaGealvveGpnGiGKttLLRilaGLlk..pesGevelndkelaeqrdelaeellylgHldglKaeLsalEnLkfyaallq........seqktveealekvgLsgledlpvaq.....LsAGqkrRlalarLllskaplWiLDEPttalDkegvellaellaaHlargGivll.athq 186
                  l+ ++ ++++l+g+s ++ +  + +v G  G GKtt +  +a   +    +G v++n+  + +  ++  +++ ++   + + a+L++  nL + a l +         ++++v   ++ +gLs+++d++v +     Ls Gqk+R+ ++  l+    +  +DEPt  lD +++  la++l+  l++ Gi+++   hq
  MMETSP1137-20121227|1821_1 234 GLTLKKSGKRVLKGISGRFPPRSMSAVMGASGCGKTTFMNAIATRAPygNVEGVVKING--VVDGLEKAGNHVGFVPQDNIMHANLTVYQNLLYNALL-RlpktmetvVKEEQVARVIKVLGLSHVQDTLVGNeekrgLSGGQKKRVNIGMELVMMPSILFMDEPTSGLDGAATIALARVLSL-LRKSGITIIcVIHQ 427
                 6899999************************************98763368999***94..4566668899*********************875543.3355555543344788999999*******9985334444***********************************9999988765.66666665504555 PP

>> TIGR01846  type_I_sec_HlyB: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.0   0.0   3.6e-15   2.6e-13     455     667 ..     227     445 ..     213     457 .. 0.84

  Alignments for each domain:
  == domain 1    score: 47.0 bits;  conditional E-value: 3.6e-15
   TIGR01846 455 aiefenirfrykedspevlsnlsldikaGeviGivGpsGsGkstltkll.qrl.yvPekGrvlvdgvdlaladPawlrrqvgvvlqenvlfsr.sirdni...alakPaiseekviaaaklaGahdfiselkqGyetevg.ekGaalsGGqrqrialaralvanPrilildeatsaldyeseavimrnlreick.grtviiiah..rlstvraadrilvlekG 667
                 +iefe + +  k+    vl+ +s   ++  +  ++G sG+Gk+t+   +  r  y   +G v ++gv  +l        +vg v q+n++  + ++ +n+   al +    +e v++  ++a   + +  l +  +t vg e+   lsGGq++r+ +   lv  P il +de ts ld  +  ++ r l+ + k g t+i++ h  r +  ++  ++l+l +G
  MMETSP1137-20121227|1821_1 227 EIEFEGVGLTLKKSGKRVLKGISGRFPPRSMSAVMGASGCGKTTFMNAIaTRApYGNVEGVVKINGVVDGLE---KAGNHVGFVPQDNIMHANlTVYQNLlynALLRLPKTMETVVKEEQVARVIK-VLGLSHVQDTLVGnEEKRGLSGGQKKRVNIGMELVMMPSILFMDEPTSGLDGAATIALARVLSLLRKsGITIICVIHqpRWAVFKEFTHLLLLGEG 445
                 79999***************************************9887624543777889999999754443...44579*********985437889873334555566899********99887.67899*******7466789***************************************999999876478******96667788888888877665 PP

>> TIGR01257  rim_protein: rim ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.8   0.0   3.2e-15   2.3e-13     953    1119 ..     252     427 ..     232     462 .. 0.83

  Alignments for each domain:
  == domain 1    score: 45.8 bits;  conditional E-value: 3.2e-15
   TIGR01257  953 fyenqitaflghngagktttlsiltgllpptsgtvlvggkdietnldavrqslgmcpqhnilfhhltvaehilfyaqlkgrsweeaqleme...amledtglhhkr.....neeaqdlsgglqrklsvaiafvgdakvvvldeptsgvdpysrrsiwdll.lkyrsgrtiimsthh 1119
                  f    ++a++g  g+gktt +  ++   p      +v  + +   l+   + +g++pq ni+   ltv + +l+ a l+     e+ ++ e    +++  gl h +     nee + lsgg ++++ + + +v    ++ +deptsg+d  +  ++  +l l  +sg tii   h+
  MMETSP1137-20121227|1821_1  252 FPPRSMSAVMGASGCGKTTFMNAIATRAPYGNVEGVVKINGVVDGLEKAGNHVGFVPQDNIMHANLTVYQNLLYNALLRLPKTMETVVKEEqvaRVIKVLGLSHVQdtlvgNEEKRGLSGGQKKRVNIGMELVMMPSILFMDEPTSGLDGAATIALARVLsLLRKSGITIICVIHQ 427 
                  5666789***************99999998766666666668899999******************************9766655555444111467889999975445559***************************************999998766366789*****99886 PP

>> TIGR02770  nickel_nikD: nickel import ATP-binding protein NikD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.0   0.0     6e-15   4.3e-13      14     185 ..     257     427 ..     249     454 .. 0.82

  Alignments for each domain:
  == domain 1    score: 47.0 bits;  conditional E-value: 6e-15
   TIGR02770  14 vlalvGesGsGksltalailglldkeltktsGeilldgkelaalalrgreialilqnPrsafnPlltikeqlletlkalekls..kqakelivealeavgLeeaeevl..kkypfelsGGmlqRvmialallleaplliaDePttdlDvvvqaevLklleelrekrglgillithD 185
                 + a++G+sG+Gk++   ai    +    +++G + ++g  +  l+  g++++++ q+ +   n l   ++ l ++l  l k+      +e++++ ++  gL++++  l  ++    lsGG  +Rv i + l++ +++l+ DePt+ lD ++ + + + l+ l +k+g++i+ + h 
  MMETSP1137-20121227|1821_1 257 MSAVMGASGCGKTTFMNAIATRAP--YGNVEGVVKINGV-VDGLEKAGNHVGFVPQDNIMHAN-LTVYQNLLYNALLRLPKTMetVVKEEQVARVIKVLGLSHVQDTLvgNEEKRGLSGGQKKRVNIGMELVMMPSILFMDEPTSGLDGAATIALARVLS-LLRKSGITIICVIHQ 427
                 5699***********999998877..67899******96.899999**********9987665.66667778888887777763344567899999999****9988833455678********************************999887666665.556789999999996 PP

>> TIGR03005  ectoine_ehuA: ectoine/hydroxyectoine ABC transporter, ATP-binding protein EhuA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.8   0.2   5.2e-14   3.7e-12      16     224 ..     245     447 ..     235     457 .. 0.68

  Alignments for each domain:
  == domain 1    score: 43.8 bits;  conditional E-value: 5.2e-14
   TIGR03005  16 ldglelevaaGekvaliGpsGsGkstilrilmtletid..eGsikvegeqlyhmkgrkGklvpadekhlrkvrekiGmvfqsfnlfphktvldnvteapvlv..kGvaraeaekravelldmvGladkadal.....paqlsGGqkqrvaiaralalrpkvllfdevtsaldpelveevlnvlrrlasetdltmllvthemgfa..refadrvlffdkGk 224
                 l+g++    +    a++G sG Gk+t +  + t  +    eG +k+           +G +       l+k  +++G+v q   +    tv +n+    +l   k ++    e++  ++++++Gl+  +d+l        lsGGqk+rv i   l + p +l++de+ts ld      +  vl  l  +  +t++ v h+ ++a  +ef+  +l+ + G+
  MMETSP1137-20121227|1821_1 245 LKGISGRFPPRSMSAVMGASGCGKTTFMNAIATRAPYGnvEGVVKI-----------NGVV-----DGLEKAGNHVGFVPQDNIMHANLTVYQNLLYNALLRlpKTMETVVKEEQVARVIKVLGLSHVQDTLvgneeKRGLSGGQKKRVNIGMELVMMPSILFMDEPTSGLDGAATIALARVL-SLLRKSGITIICVIHQPRWAvfKEFTHLLLLGEGGR 447
                 5555555555556666777777777777777666655311333333...........2322.....34667788999999988888888888887765543212566666667766777777777776666511111457********************************98776555555.5667889*********99885567777666666666 PP

>> TIGR01193  bacteriocin_ABC: ABC-type bacteriocin transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.8   0.0   1.9e-14   1.4e-12     485     684 ..     240     445 ..     204     463 .. 0.77

  Alignments for each domain:
  == domain 1    score: 44.8 bits;  conditional E-value: 1.9e-14
   TIGR01193 485 ygsevledislkikknekitlvGlsGsGkstlakllvk..ffqaesGeillngkslkdidkhelrqlinylPqePfifsG.silenlllgakenv..sqeeikkaveiaeikddiek..lplGyqtels.eeassisgGqkqrlalarallsdskvlildestsnld...lltekkivenllklkdktiifvah..rlsvakksdkiivldeG 684
                  g++vl+ is +    +  +++G sG Gk+t++  +     + + +G +++ng+ ++ ++k    +++ ++Pq+ ++ +  ++ +nll +a  ++  + e++ k  ++a     i+   l+   +t +  ee   +sgGqk+r+ +   l+    +l +de ts ld   ++   ++++ ll+ +  tii v h  r  v k+  +++ l eG
  MMETSP1137-20121227|1821_1 240 SGKRVLKGISGRFPPRSMSAVMGASGCGKTTFMNAIATraPYGNVEGVVKINGV-VDGLEKA--GNHVGFVPQDNIMHANlTVYQNLLYNALLRLpkTMETVVKEEQVAR---VIKVlgLSHVQDTLVGnEEKRGLSGGQKKRVNIGMELVMMPSILFMDEPTSGLDgaaTIALARVLS-LLRKSGITIICVIHqpRWAVFKEFTHLLLLGEG 445
                 47889999999999******************999875226999********96.7889886..589**********9765999****9997766114455555555555...5555005555677776256778********************************544455555554.66666889****995566777777777777665 PP

>> TIGR02769  nickel_nikE: nickel import ATP-binding protein NikE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.1   0.0   2.5e-14   1.8e-12       8     228 ..     226     447 ..     222     455 .. 0.75

  Alignments for each domain:
  == domain 1    score: 45.1 bits;  conditional E-value: 2.5e-14
   TIGR02769   8 vshtyrtggllgkkqrkavldnvslsleeGetvallGrsGaGkstlarlllGlekPakGevsfrGqdlakldr..kqrkafrrdvqlvfqdsisavnprksvreiigePlrhltsldeserkariaellelvelrs...evl.dklPrqlsGGqlqriniaralavePklivldeavsnldlvlqasilellkklkqefGlaylfithdlr..lvqkfaqrvlvldeGq 228
                 v  +++  gl+ kk+ k vl+++s         a++G sG+Gk+t+   +        G+v      + k+++  ++  +   +v +v qd i   n     +   +  lr  ++++   +++++a+++++++l++     + +   r lsGGq +r+ni   l + P ++ +de  s ld    +++ + l  l +++G++++ + h  r  + ++f++ +l+ ++G+
  MMETSP1137-20121227|1821_1 226 VEIEFEGVGLTLKKSGKRVLKGISGRFPPRSMSAVMGASGCGKTTFMNAIATR--APYGNVE----GVVKINGvvDGLEKAGNHVGFVPQDNIMHANLTVYQNLLYNALLRLPKTMETVVKEEQVARVIKVLGLSHvqdTLVgNEEKRGLSGGQKKRVNIGMELVMMPSILFMDEPTSGLDGAATIALARVLSLL-RKSGITIICVIHQPRwaVFKEFTHLLLLGEGGR 447
                 556677789999*****************9999*************9998754..3456653....2333333113445556789*******998887666555556666766778877788888888888777641103332566788********************************99888777777655.579*******99876213456666666666665 PP

>> TIGR02324  CP_lyasePhnL: phosphonate C-P lyase system protein PhnL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.6   0.2     6e-13   4.2e-11      26     208 ..     247     427 ..     236     435 .. 0.81

  Alignments for each domain:
  == domain 1    score: 40.6 bits;  conditional E-value: 6e-13
   TIGR02324  26 evsleveaGelvalsGksGaGkstllkslyanYlpesgrilvrhegeivdlvkaserevlevRrktigyvsqfLrviPRvsalevvaepllelGvereearakakellarlniperLWsl.aPatfsGGekqRvniaraliadrPiLLLdePtasLdaanrkvvvelikeakargaaligifhd 208
                  +s +     + a++G+sG Gk t++ ++ +     + + +v+  + +vd ++ +  +v  v + +i +    L v   +    ++  p +   v +ee  a++ ++l   ++ + L         sGG k+Rvni + l++   iL +dePt+ Ld a   +   +++ ++++g+++i ++h+
  MMETSP1137-20121227|1821_1 247 GISGRFPPRSMSAVMGASGCGKTTFMNAIATRAPYGNVEGVVKI-NGVVDGLEKAGNHVGFVPQDNIMHA--NLTVYQNLLYNALLRLPKTMETVVKEEQVARVIKVLGLSHVQDTLVGNeEKRGLSGGQKKRVNIGMELVMMPSILFMDEPTSGLDGAATIALARVLSLLRKSGITIICVIHQ 427
                 555555556677899***********999654333333334444.4467766777777899999999775..47788888888899999999999999999999999999999999976515678*****************777999***********9999********************7 PP

>> TIGR01288  nodI: nodulation ABC transporter NodI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.7   0.1   8.3e-13   5.9e-11      33     193 ..     258     426 ..     226     454 .. 0.79

  Alignments for each domain:
  == domain 1    score: 39.7 bits;  conditional E-value: 8.3e-13
   TIGR01288  33 fgllgpngagkstiarlvlglispdegkitvlgepvpararlarakigvvpqfdnldreftvrenllvfg..ry.fglstreieevipsllefarleskadvrvad.....lsggmkrrltlaralindpqllildepttgldpharhliwerlrsll.argktilltth 193
                   ++g  g+gk+t    +   ++  + +  v  + v      a  ++g vpq + ++ ++tv +nll     r   +++t   ee +  +++   l    d+ v +     lsgg k+r+ + + l+  p +l +dept+gld  a      r+ sll   g ti+   h
  MMETSP1137-20121227|1821_1 258 SAVMGASGCGKTTFMNAIATRAPYGNVEGVVKINGVVDGLEKAGNHVGFVPQDNIMHANLTVYQNLLYNAllRLpKTMETVVKEEQVARVIKVLGLSHVQDTLVGNeekrgLSGGQKKRVNIGMELVMMPSILFMDEPTSGLDGAATIA-LARVLSLLrKSGITIICVIH 426
                 568999********999999888777666677777888889999*********************98544112213567777788899999999999988888864444559*******************************988755.56666666156899988877 PP

>> TIGR01186  proV: glycine betaine/L-proline transport ATP binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.2   0.0   1.3e-12   9.3e-11      23     188 ..     259     426 ..     244     432 .. 0.77

  Alignments for each domain:
  == domain 1    score: 39.2 bits;  conditional E-value: 1.3e-12
   TIGR01186  23 viiGlsGsGkstlvrllnrliePtaGkilidGediaeisdaelrevrrkkiamviqkialfPhmtildnislg..lellkideq.erkekalealklvdleeyedryPde.....lsGGmqqrvGlaralaaePdlllmdeafsaldPlirdelqdelvklqkklqktivfith 188
                  ++G sG+Gk+t +  +        G++  +G+  ++   + l e     +++v q+  +    t+ +n+ +   l+l k  e   ++e+   ++k ++l + +d+   +     lsGG+++rv +   l + P +l+mde+ s ld      l    + l +k   ti+ + h
  MMETSP1137-20121227|1821_1 259 AVMGASGCGKTTFMNAIATR--APYGNV--EGVVKINGVVDGL-EKAGNHVGFVPQDNIMHANLTVYQNLLYNalLRLPKTMETvVKEEQVARVIKVLGLSHVQDTLVGNeekrgLSGGQKKRVNIGMELVMMPSILFMDEPTSGLDGAATIALARV-LSLLRKSGITIICVIH 426
                 68************988753..334443..5555555555667.778899********************997224454544431466777888999999888876532112344********************************9998888765.5666788899999988 PP

>> TIGR02323  CP_lyasePhnK: phosphonate C-P lyase system protein PhnK
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.4   0.1     0.002      0.14      21      51 ..     248     279 ..     231     292 .. 0.74
   2 !   28.3   0.0   3.4e-09   2.4e-07     139     224 ..     366     456 ..     349     464 .. 0.83

  Alignments for each domain:
  == domain 1    score: 9.4 bits;  conditional E-value: 0.002
   TIGR02323  21 vsf.lypGevlgivGesGsGkstllkalaarl 51 
                 +s  + p  + +++G sG Gk+t+++a+a+r 
  MMETSP1137-20121227|1821_1 248 ISGrFPPRSMSAVMGASGCGKTTFMNAIATRA 279
                 55523456677899***************975 PP

  == domain 2    score: 28.3 bits;  conditional E-value: 3.4e-09
   TIGR02323 139 paafsGGmqqrlqiarnlvtrprlvfm.eptGGl.vsvqarllllrglvrelglaviivth...lavarllaqrllvmkqGrvvesGltrv 224
                  + +sGG ++r++i  +lv  p ++fm ept Gl  +    l  + +l+r+ g+++i v h    av + +++ ll+ + Gr v  G + +
  MMETSP1137-20121227|1821_1 366 KRGLSGGQKKRVNIGMELVMMPSILFMdEPTSGLdGAATIALARVLSLLRKSGITIICVIHqprWAVFKEFTHLLLLGEGGRQVYCGEAGL 456
                 5779******************************5444444446778999**********9777799999999999999999887765544 PP

>> TIGR03269  met_CoM_red_A2: methyl coenzyme M reductase system, component A2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.7   0.0    0.0035      0.24       6      59 ..     235     288 ..     230     295 .. 0.91
   2 !   27.1   0.0   4.5e-09   3.2e-07     143     250 ..     341     451 ..     311     463 .. 0.76

  Alignments for each domain:
  == domain 1    score: 7.7 bits;  conditional E-value: 0.0035
   TIGR03269   6 ltkkfdglevlknisleleeGevlGilGksGaGksvllhllrGldeyeptsGki 59 
                 lt k  g++vlk is ++    +  ++G sG+Gk+ +++ +     y + +G +
  MMETSP1137-20121227|1821_1 235 LTLKKSGKRVLKGISGRFPPRSMSAVMGASGCGKTTFMNAIATRAPYGNVEGVV 288
                 67788999*********************************9999999999966 PP

  == domain 2    score: 27.1 bits;  conditional E-value: 4.5e-09
   TIGR03269 143 keavkravelleevklehrit..hiardlsGGekqrvvlarqlakeplllladeptGtldpktaklvhealkeavkeedislvltshwpe..viedlsdkaillekGeivee 250
                 +e v r +++l   +++  ++     r lsGG+k+rv +  +l+  p +l+ dept  ld   a +    +    ++++i+++   h p+  v+++ ++  +l e G  v  
  MMETSP1137-20121227|1821_1 341 EEQVARVIKVLGLSHVQDTLVgnEEKRGLSGGQKKRVNIGMELVMMPSILFMDEPTSGLDGA-ATIALARVLSLLRKSGITIICVIHQPRwaVFKEFTHLLLLGEGGRQVYC 451
                 4567777777777777776652235799********************************85.6677777888999*********999854377777766666666655555 PP

>> TIGR02633  xylG: D-xylose ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.7   1.1   4.1e-11   2.9e-09     291     459 ..     260     424 ..     256     446 .. 0.80

  Alignments for each domain:
  == domain 1    score: 33.7 bits;  conditional E-value: 4.1e-11
   TIGR02633 291 vaGlvGaGrtelvqalfGayp.GkfegevfldgkqvdirnpaqairagialvpedrkrdGivpvlgvGknitlavlkkfakksrideaaelkaieeeikrlkvktaspdl....piarlsGGnqqkavlakllllnprvlildeptrGvdvGakyeiyklinqlaqeGvaiivv 459
                 v G  G+G+t  ++a+    p G++eg v ++g      + ++   + + +vp+d   +   ++l+v +n+   +l +  k+++     +++ + + ik l +  ++  l       +lsGG++++  +   l++ p +l +dept G+d  a   + ++++ l + G++ii v
  MMETSP1137-20121227|1821_1 260 VMGASGCGKTTFMNAIATRAPyGNVEGVVKINGV----VDGLEKAGNHVGFVPQDNIMH---ANLTVYQNLLYNALLRLPKTMET--VVKEEQVARVIKVLGLSHVQDTLvgneEKRGLSGGQKKRVNIGMELVMMPSILFMDEPTSGLDGAATIALARVLSLLRKSGITIICV 424
                 78999**********98765559********995....34555667889******8776...6899**********999885443..3333445566666666555555511115678****9999999999***************************************987 PP

>> TIGR03719  ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.0   0.0   7.9e-08   5.6e-06     160     217 ..     367     427 ..     359     453 .. 0.75

  Alignments for each domain:
  == domain 1    score: 23.0 bits;  conditional E-value: 7.9e-08
   TIGR03719 160 eklsGGekrrvalcrlllekPdlllldePtnhldaesvaWlekflk...eykGtvvavthd 217
                   lsGG+k+rv +   l+  P +l++dePt  ld  +   l + l+   +   t+++v h 
  MMETSP1137-20121227|1821_1 367 RGLSGGQKKRVNIGMELVMMPSILFMDEPTSGLDGAATIALARVLSllrKSGITIICVIHQ 427
                 5689999999999999999999999999999999888777777654110334477777775 PP

>> TIGR01192  chvA: glucan exporter ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.6   0.0   2.4e-11   1.7e-09     295     535 ..     191     435 ..     148     457 .. 0.73

  Alignments for each domain:
  == domain 1    score: 34.6 bits;  conditional E-value: 2.4e-11
   TIGR01192 295 fvtqivear.akledffdledsvkereepadarelknvkgavefrdisfefanssqgv.rdvsfeakagqtvaivgptgagkttlinllq.r.vydpksgqilidgvdiatvtreslrksiatvfqdagl.lnrsireni...rlgredatdeevveaakaaaasdfiekrlkgydtlvgergnr.lsggerqrlaiarailknapilvldeatsaldvetearvkdaidalrknrttfi.iah..rlstvre 535
                   ++ +ear a l+       ++++ +  +   e k+ + ++ef+ +   +  s + v + +s +       a++g +g gktt++n +  r  y   +g + i+gv ++ +++    + +  v qd  +  n ++ +n+    l r   t e vv+  + a         ++  dtlvg+  +r lsgg+++r+ i   ++    il +de ts ld  + + +   +  lrk   t+i + h  r +  +e
  MMETSP1137-20121227|1821_1 191 RRNKKMEARsAALRSQ----YAAQDVNSIGGEYEHKAESVEIEFEGVGLTLKKSGKRVlKGISGRFPPRSMSAVMGASGCGKTTFMNAIAtRaPYGNVEGVVKINGV-VDGLEKA--GNHVGFVPQDNIMhANLTVYQNLlynALLRLPKTMETVVKEEQVARVIKV-LGLSHVQDTLVGNEEKRgLSGGQKKRVNIGMELVMMPSILFMDEPTSGLDGAATIALARVLSLLRKSGITIIcVIHqpRWAVFKE 435
                 4455555542334443....3556666777777788888999********999977662679999999999****************87524258999999999998.6677665..57889999998762578999998444577888999999998888877765.5567888*****877665************************************************9999872334334555555 PP

>> TIGR00630  uvra: excinuclease ABC subunit A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.2   0.0   0.00011    0.0077     583     658 ..     210     280 ..     158     305 .. 0.78
   2 !   20.2   0.1   4.2e-07     3e-05     815     908 ..     351     446 ..     333     451 .. 0.75

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 0.00011
   TIGR00630 583 kkkesltgqYlsgkkkievPkerrkaegkvltlkgakennlkdidvsiplglltvitGvsgsGkstLindiLvkal 658
                 ++ +s+ g+Y ++ +++e+     + eg  ltlk++ +  lk i+ ++p   + ++ G sg Gk t++n i ++a 
  MMETSP1137-20121227|1821_1 210 QDVNSIGGEYEHKAESVEI-----EFEGVGLTLKKSGKRVLKGISGRFPPRSMSAVMGASGCGKTTFMNAIATRAP 280
                 4445555555555555554.....5567789**************************************9987765 PP

  == domain 2    score: 20.2 bits;  conditional E-value: 4.2e-07
   TIGR00630 815 vGLgYik...lGqp.attLsGGeaqrvkLakeLskrstgktlyilDePttGLhfdDikkLlevlqrlvdkGntvvviehn..ldviksaDyiidlGPeGG 908
                 +GL +++   +G++    LsGG  +rv + +eL        +  +DePt GL  +    L +vl  l ++G t++ + h     v k+  +++ lG eGG
  MMETSP1137-20121227|1821_1 351 LGLSHVQdtlVGNEeKRGLSGGQKKRVNIGMELVM---MPSILFMDEPTSGLDGAATIALARVLSLLRKSGITIICVIHQprWAVFKEFTHLLLLG-EGG 446
                 4555554333565415679*************975...5678899*********9999***************99999863357888888888777.455 PP

>> TIGR00957  MRP_assoc_pro: multi drug resistance-associated protein (MRP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.6   0.0   9.1e-11   6.4e-09     634     793 ..     225     401 ..     193     412 .. 0.77

  Alignments for each domain:
  == domain 1    score: 31.6 bits;  conditional E-value: 9.1e-11
   TIGR00957 634 gnsitvknatftwardepptlngltlsipegalvavvgqvgcgkssllsall..aemdkvegkvalkgs..........vayvpqqawi.qndslrenilfgkale.ekyykavleacalladlei..lpsgdrteig.ekgvnlsggqkqrvslaravysdadiyllddplsavda 793
                 +  i  +   +t  ++    l+g++ + p  ++ av+g  gcgk++++ a+   a   +veg v+++g           v +vpq+  +  n ++ +n+l+   l+ +k  ++v++   +   +++  l   + t +g e    lsggqk+rv +   +     i ++d+p s +d 
  MMETSP1137-20121227|1821_1 225 SVEIEFEGVGLTLKKSGKRVLKGISGRFPPRSMSAVMGASGCGKTTFMNAIAtrAPYGNVEGVVKINGVvdglekagnhVGFVPQDNIMhANLTVYQNLLYNALLRlPKTMETVVKEEQVARVIKVlgLSHVQDTLVGnEEKRGLSGGQKKRVNIGMELVMMPSILFMDEPTSGLDG 401
                 45566666778889999999****************************99872255789******99962222222223579***98772589**********99835566677755444444444115566677787356678*****************************9996 PP

>> TIGR03415  ABC_choXWV_ATP: choline ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.0   0.3   3.2e-09   2.2e-07      53     228 ..     258     431 ..     247     455 .. 0.69

  Alignments for each domain:
  == domain 1    score: 28.0 bits;  conditional E-value: 3.2e-09
   TIGR03415  53 lvlmGlsGsGkssllravnglnpvsrGkvl.vkdedkevdvakcdeatlrklrtkrvsmvfqkfallPWrtveenvafG..lel.sGvakaerrkrveeqlelvglaeWadkkvge.....lsGGmqqrvGlarafateadillmdePfsaldPliraklqdellelqkklkktivfvshdldea 228
                 + +mG sG Gk++++ a+   +p    +v+ v + ++ vd  +           ++v  v q   +   +tv +n+ +   l l + +    + ++v++ ++++gl++ +d+ vg+     lsGG ++rv +   + +   il+mdeP s ld      l   +l+l +k   ti+ v h    a
  MMETSP1137-20121227|1821_1 258 SAVMGASGCGKTTFMNAIATRAPYG--NVEgVVKINGVVDGLEKAG--------NHVGFVPQDNIMHANLTVYQNLLYNalLRLpKTMETVVKEEQVARVIKVLGLSHVQDTLVGNeekrgLSGGQKKRVNIGMELVMMPSILFMDEPTSGLDGAATIALA-RVLSLLRKSGITIICVIHQPRWA 431
                 5689999999999999999888864..4432444556666554443........4566666666666666777666554223332345555566677777777888877776654223444********************************99988886.67888899999999999976554 PP

>> TIGR00954  3a01203: peroxysomal long chain fatty acyl transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.7   0.0   4.6e-08   3.2e-06     420     656 ..     193     445 ..     180     449 .. 0.79
   2 ?   -1.7   0.2       2.2   1.6e+02      99     142 ..     638     681 ..     624     696 .. 0.87

  Alignments for each domain:
  == domain 1    score: 23.7 bits;  conditional E-value: 4.6e-08
   TIGR00954 420 krprveekesaeee..srkselvagrgkveaqdngikfeniplvtP.egdvlieeLsfevksGnhlLiiGPnGcGKsslfRilgelWPvyg........gllt..kpeegklFyvPqrPYmslg.tlRdqiiYPd..ssedfkerglsdkdLeqiLeevkLedllereggwdavqdWkdvLsgGekqRiamARlfyHkPkfavLDEctsAv...svdvEdklyelakevgitllsvshrksLwky..HeylLkldgkG 656
                 ++ ++++++  +++  +++ + + g+ + +a+   i fe + l    +g+ +++ +s + +  +   ++G  GcGK  ++  ++   P  +        g+      + +++ +vPq   m    t+ + ++Y    +  + +e  ++++++ ++++++ L+++ +  +g +     k  LsgG+k+R+++   +   P    +DE ts +   +     ++ +l+++ git++ v h++    +   ++lL l+ +G
  MMETSP1137-20121227|1821_1 193 NKKMEARSAALRSQyaAQDVNSIGGEYEHKAESVEIEFEGVGLTLKkSGKRVLKGISGRFPPRSMSAVMGASGCGKTTFMNAIATRAPYGNvegvvkinGVVDglEKAGNHVGFVPQDNIMHANlTVYQNLLYNAllRLPKTMETVVKEEQVARVIKVLGLSHVQDTLVGNEE----KRGLSGGQKKRVNIGMELVMMPSILFMDEPTSGLdgaATIALARVLSLLRKSGITIICVIHQPRWAVFkeFTHLLLLG-EG 445
                 44444444444444447788888888888899999*******988758999***********9999**********************888998999994443114567899**********999********972244566777899****************999999765....778************99999************763312223468899**************88655550045555554.33 PP

  == domain 2    score: -1.7 bits;  conditional E-value: 2.2
   TIGR00954  99 ilqavlLviRtllsvyvakldgqlvksivrrsprsFakellkwl 142
                 +++ +++ i+t++ v+v   + +    i++   ++F  + + w 
  MMETSP1137-20121227|1821_1 638 VAIFFAMTIKTYATVFVKAFAFSFITYILASPLQNFVVYFVSWY 681
                 56778999*********************999999999999885 PP

>> TIGR03348  VI_IcmF: type VI secretion protein IcmF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.0   2.6e-05    0.0019      30     130 ..     168     274 ..     158     293 .. 0.74

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 2.6e-05
   TIGR03348  30 svlarlliiavlllvwalwllirlwrak..rkaqalleelaaeekekqdaaaeaeiaelearlkealallkksrlk......krrylyelPWYlviGppGsGKTtllkn 130
                 +v+a ++i+a+++l+++ ++++++ ++k   + +al+++ aa++ ++   + e +++ +e +++ +  +lkks ++      +r   + +    v+G++G+GKTt ++ 
  MMETSP1137-20121227|1821_1 168 PVAAFIIIVALVVLLLGSYCMAKRRNKKmeARSAALRSQYAAQDVNSIGGEYEHKAESVEIEFEGVGLTLKKSGKRvlkgisGRFPPRSM--SAVMGASGCGKTTFMNA 274
                 5677889999999999999987666655445556666666666666666667799999***************98886455422222222..469**********9875 PP

>> TIGR01271  CFTR_protein: cystic fibrosis transmembrane conductor regulator (CFTR)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.2   0.0   6.5e-05    0.0046    1224    1397 ..     234     412 ..     195     450 .. 0.73

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 6.5e-05
   TIGR01271 1224 takyteagravlqdlsfsveagqrvgllgrtgsgkstllsallrll...stegeiqidgvswnsvtlqkwrkafgvipqkvfil.sgtfrknldpyeqys.deeiwkvaeevglksvieqfp.dkldfvlv..dggyvlsnghkqlmclarsilskakillldepsafldpvtlqiirktlk 1397
                       ++g+ vl+ +s    +     ++g +g+gk+t++ a+   +   + eg ++i+gv      l+k     g +pq  ++    t  +nl   +     + +  v +e  +  vi+ +   +++  lv  +    ls g k+ + +   ++    il++dep++ ld  +   + + l 
  MMETSP1137-20121227|1821_1  234 GLTLKKSGKRVLKGISGRFPPRSMSAVMGASGCGKTTFMNAIATRApygNVEGVVKINGVVD---GLEKAGNHVGFVPQDNIMHaNLTVYQNLLYNALLRlPKTMETVVKEEQVARVIKVLGlSHVQDTLVgnEEKRGLSGGQKKRVNIGMELVMMPSILFMDEPTSGLDGAATIALARVLS 412 
                  44455789********************************99764433389********964...69999999*****9866551458888886555433145556666666666666655323333333311455679******************************9876666666554 PP

>> TIGR02788  VirB11: P-type DNA transfer ATPase VirB11
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   0.00024     0.017     149     216 ..     260     330 ..     254     334 .. 0.74

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 0.00024
   TIGR02788 149 isGgtgsgKTTflkalvkliP..keeRlitiedteElklkhpNkvhLlyske.gqgsakvtakdllescLR 216
                 ++G++g gKTTf++a+    P  + e ++ i+ + +   k  N+v  + + +  + + +v ++ l ++ LR
  MMETSP1137-20121227|1821_1 260 VMGASGCGKTTFMNAIATRAPygNVEGVVKINGVVDGLEKAGNHVGFVPQDNiMHANLTVYQNLLYNALLR 330
                 89*****************9944468899999999888888999987776663333444444444555566 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (870 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       254  (0.061921); expected 82.0 (0.02)
Passed bias filter:                      181  (0.0441248); expected 82.0 (0.02)
Passed Vit filter:                        95  (0.0231594); expected 4.1 (0.001)
Passed Fwd filter:                        58  (0.0141394); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              58  [number of targets reported over threshold]
# CPU time: 1.65u 0.20s 00:00:01.85 Elapsed: 00:00:01.57
# Mc/sec: 731.40
//
Query:       MMETSP1137-20121227|1822_1  [L=158]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.1e-06   23.0   6.3    3.6e-06   22.8   4.4    1.0  1  TIGR02169 SMC_prok_A: chromosome segregation protein SMC
    3.7e-05   19.5   9.2    4.4e-05   19.2   6.4    1.1  1  TIGR02168 SMC_prok_B: chromosome segregation protein SMC
     0.0092   12.5   6.3      0.011   12.2   4.3    1.1  1  TIGR02231 TIGR02231: conserved hypothetical protein
  ------ inclusion threshold ------
      0.011   12.5  10.4      0.017   11.9   7.2    1.3  1  TIGR01843 type_I_hlyD: type I secretion membrane fusion protein, HlyD family
      0.021   12.5   0.3      0.027   12.1   0.2    1.2  1  TIGR02463 MPGP_rel: mannosyl-3-phosphoglycerate phosphatase homolog
      0.044   10.0   8.6      0.055    9.7   6.0    1.1  1  TIGR03185 DNA_S_dndD: DNA sulfur modification protein DndD
      0.053   10.5  10.2        0.2    8.6   0.5    2.1  2  TIGR00996 Mtu_fam_mce: virulence factor Mce family protein
       0.17    9.8  12.6      0.059   11.2   0.5    3.3  3  TIGR02338 gimC_beta: prefoldin, beta subunit
        0.3    9.3  12.0          2    6.6   0.8    2.3  2  TIGR02473 flagell_FliJ: flagellar export protein FliJ
       0.34    9.0  12.7       0.17   10.0   1.5    3.2  2  TIGR03930 WXG100_ESAT6: WXG100 family type VII secretion target
       0.38    8.7  15.7        1.2    7.1   2.3    3.8  4  TIGR00293 TIGR00293: prefoldin, alpha subunit
        0.5    8.2  10.1        0.4    8.5   0.5    3.0  3  TIGR02209 ftsL_broad: cell division protein FtsL
        1.1    7.3   9.3        1.4    6.8   0.8    2.3  2  TIGR02894 DNA_bind_RsfA: transcription factor, RsfA family
        1.1    6.0  10.9       0.68    6.7   1.5    2.0  2  TIGR00414 serS: serine--tRNA ligase
        7.2    4.8  15.2        4.6    5.4   3.0    2.3  2  TIGR03495 phage_LysB: phage lysis regulatory protein, LysB family


Domain annotation for each model (and alignments):
>> TIGR02169  SMC_prok_A: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.8   4.4   1.3e-08   3.6e-06     319     459 ..       3     143 ..       1     156 [. 0.87

  Alignments for each domain:
  == domain 1    score: 22.8 bits;  conditional E-value: 1.3e-08
   TIGR02169 319 edaeerlakaeaeidklkeeieelereieeekkereklkeelkelkeeleelraeleevdkeaaelree.lkelkekleklkeelnelkreldrlleelkrleeelaelkaelerieekiaeleeeleelaeeikkaeqkle 459
                 +++ ++ +k++++   + +++ el+ ++ +  +e ++l++  +++ ++   l a+++++++e + lr++ l  +    +++ + + el++++ r  +   +lee++ e++a +e+ ++  a++ + l ++++ +k  + +l+
  MMETSP1137-20121227|1822_1   3 KELTDKFQKLQVQCTTILKTKSELQAQVDALTAENAALSSTANSSGDTATVLNAQVKKLEAELQSLRDApLPPYDCLRDDVASLMSELQGTQARVADLTSQLEEAQTEIQARIEKSKQ-FANMRQILAKKNAVVKDLRDQLS 143
                 7788999************************************************************9835677778899*********************************98764.56666666677777776666665 PP

>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   6.4   1.6e-07   4.4e-05     244     383 ..       5     141 ..       1     157 [. 0.31

  Alignments for each domain:
  == domain 1    score: 19.2 bits;  conditional E-value: 1.6e-07
   TIGR02168 244 leeelkeaeeeleeleaelkeleeeleelrlekseleeeleelqkelqelkaeisrleqeieilkerleqlekeleeleeqleeleskkeeleeelaeleeeleelkeelesleaeleeaeaeleelesrleeleeelee 383
                 l++++++++ +++++ ++ +el+++++ l +e++ l++++++  ++   l+a++++le+e++ l++        ++ l ++++ l s+++ +++++a+l+ +lee+++e+++  ++ +++++ ++ l ++++ +++  ++
  MMETSP1137-20121227|1822_1   5 LTDKFQKLQVQCTTILKTKSELQAQVDALTAENAALSSTANSSGDTATVLNAQVKKLEAELQSLRDAP---LPPYDCLRDDVASLMSELQGTQARVADLTSQLEEAQTEIQARIEKSKQFANMRQILAKKNAVVKDLRDQ 141
                 23333333333333333333333333333333333333333333333333333333333333333332...122233333333333333333333333333333333333332222222222222222222222222222 PP

>> TIGR02231  TIGR02231: conserved hypothetical protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.2   4.3   4.1e-05     0.011      71     177 ..       7     121 ..       2     144 .. 0.76

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 4.1e-05
   TIGR02231  71 eriaelrkkireleaeledledradalkklkkfledirekltepikd....lkreeadlkelkkl....ldfaeseieklleedreveakirelekklselenelralltekeqr 177
                  + ++l+ +   + + + +l++++dal +    l  +++ + +  +     +k+ ea+l++l+++    +d  +  +++l++e++  +a+ ++l  +l e ++e +a  ++++q+
  MMETSP1137-20121227|1822_1   7 DKFQKLQVQCTTILKTKSELQAQVDALTAENAALSSTANSSGDTATVlnaqVKKLEAELQSLRDAplppYDCLRDDVASLMSELQGTQARVADLTSQLEEAQTEIQARIEKSKQF 121
                 5778888888888899999999999999888666665555544444334458889999999998766668999999999999999999999999999999999999888754443 PP

>> TIGR01843  type_I_hlyD: type I secretion membrane fusion protein, HlyD family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   7.2   6.3e-05     0.017     132     263 ..      10     144 ..       2     150 .. 0.69

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 6.3e-05
   TIGR01843 132 slfesrksalraqlesleaqikqleaeleglqaqlqalrqqleliseelealr.kLkekglvsrlelLelereraelqgelaeleaeleklkaeldeleeklqeleqkfr..eevseelreaqarlaeleeelsk 263
                 ++++ + +++ +++ +l+aq++ l ae + l + +++  +++++++ +++ l+ +L++    + + +  l + +a+l +el+ ++a+++ l ++l+e++ ++q  ++k +  +++++ l + +a +++l+ +ls+
  MMETSP1137-20121227|1822_1  10 QKLQVQCTTILKTKSELQAQVDALTAENAALSSTANSSGDTATVLNAQVKKLEaELQSLRDAPLPPYDCLRDDVASLMSELQGTQARVADLTSQLEEAQTEIQARIEKSKqfANMRQILAKKNAVVKDLRDQLSA 144
                 455556666667777777777777777777777777777777777777765542566666677777777788888888888888888888888888888888776655441157777777777777777777765 PP

>> TIGR02463  MPGP_rel: mannosyl-3-phosphoglycerate phosphatase homolog
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.2   9.8e-05     0.027      46     152 ..      20     125 ..      15     152 .. 0.84

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 9.8e-05
   TIGR02463  46 ealrkelglq.dPyivEnGaviqleelkreeeprlilGksyeilrlkLeklseelsfklktlddlsdaeiaeltGLsgeqlelaqdreasvpllndsdereerltall 152
                  + + el+ q d + +En a    ++ +   +  ++l  + + l+ +L++l++    ++  l d     ++el G + + ++l+ + e + + ++   e+ +++ ++ 
  MMETSP1137-20121227|1822_1  20 LKTKSELQAQvDALTAENAALSSTANSSG--DTATVLNAQVKKLEAELQSLRDAPLPPYDCLRDDVASLMSELQGTQARVADLTSQLEEAQTEIQARIEKSKQFANMR 125
                 5567889999999*****99888777776..88999*****************9988888887777788899999999999999999999999988877777776654 PP

>> TIGR03185  DNA_S_dndD: DNA sulfur modification protein DndD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   6.0    0.0002     0.055     328     466 ..       1     143 [.       1     157 [. 0.72

  Alignments for each domain:
  == domain 1    score: 9.7 bits;  conditional E-value: 0.0002
   TIGR03185 328 rdkellelLpklalpaelvkelaaelaelakka...ktdleiplllsdselaqlevliekvkrekqdaksqLlkeleeleeelaeldkkietvpdeekvaelleeleeaeeevaks...eveieektekleelkeaieelrkelk 466
                 r+kel+  ++kl+++ ++  + ++el + + +    ++ l ++  +s++  + l+++ +k++ e+q  + + l     l ++ a l  ++++   + +va l+++leea+ e++++    +++++ +++l + +  +++lr +l 
  MMETSP1137-20121227|1822_1   1 RNKELTDKFQKLQVQCTTILKTKSELQAQVDALtaeNAALSSTANSSGDTATVLNAQVKKLEAELQSLRDAPLPPYDCLRDDVASLMSELQGT--QARVADLTSQLEEAQTEIQARiekSKQFANMRQILAKKNAVVKDLRDQLS 143
                 567777777777777776666666665533322233677778888899999999999999999999999999999999999999999988876..45788888888888888865421145677788888888888889988873 PP

>> TIGR00996  Mtu_fam_mce: virulence factor Mce family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   2.1    0.0034      0.92     221     288 ..       5      71 ..       2      74 .. 0.69
   2 ?    8.6   0.5   0.00074       0.2     216     274 ..      81     141 ..      77     152 .. 0.70

  Alignments for each domain:
  == domain 1    score: 6.5 bits;  conditional E-value: 0.0034
   TIGR00996 221 liaqladrsdaLddalaalsalsaqvrdllaenrpnLaqalanLasvltllvdyspeleqlLkllpta 288
                 l++ +++ + +   +l++ s+l aqv++l aen + L  ++++  +++t+l+ + ++le  L+ l +a
  MMETSP1137-20121227|1822_1   5 LTDKFQKLQVQCTTILKTKSELQAQVDALTAEN-AALSSTANSSGDTATVLNAQVKKLEAELQSLRDA 71 
                 666666666666677777777777777777777.7777777777777777777777777777766655 PP

  == domain 2    score: 8.6 bits;  conditional E-value: 0.00074
   TIGR00996 216 dnlatliaqladrsdaLddalaalsalsaqvrdllaenrp..nLaqalanLasvltllvdy 274
                 d++a+l++ l+ ++++++d++++l+++ +++++ ++++++  n++q la+ ++v++ l+d+
  MMETSP1137-20121227|1822_1  81 DDVASLMSELQGTQARVADLTSQLEEAQTEIQARIEKSKQfaNMRQILAKKNAVVKDLRDQ 141
                 6677777778888888888888888888888877777764336666777666666666665 PP

>> TIGR02338  gimC_beta: prefoldin, beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.5   0.00022     0.059      70     103 ..       3      36 ..       1      42 [. 0.91
   2 ?   -0.5   0.0      0.97   2.6e+02      94     106 ..      55      67 ..      50      71 .. 0.46
   3 ?    3.8   1.5     0.045        12      35      75 ..     103     141 ..      78     151 .. 0.48

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 0.00022
   TIGR02338  70 eeLeekketlelrvktlekQeerlrekleelqek 103
                 +eL++k + l+++  t+ k +++l+++++ l+++
  MMETSP1137-20121227|1822_1   3 KELTDKFQKLQVQCTTILKTKSELQAQVDALTAE 36 
                 89**************************999875 PP

  == domain 2    score: -0.5 bits;  conditional E-value: 0.97
   TIGR02338  94 rekleelqekiqe 106
                 ++++++l++++q 
  MMETSP1137-20121227|1822_1  55 NAQVKKLEAELQS 67 
                 3344444444332 PP

  == domain 3    score: 3.8 bits;  conditional E-value: 0.045
   TIGR02338  35 evekaLeelekleddtkvYksvGnllvktdkeevleeLeek 75 
                 + e+a  e++   +++k + ++ ++l k  k+ v+++L+++
  MMETSP1137-20121227|1822_1 103 QLEEAQTEIQARIEKSKQFANMRQILAK--KNAVVKDLRDQ 141
                 2222223333333344444444444433..44555555555 PP

>> TIGR02473  flagell_FliJ: flagellar export protein FliJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   0.8    0.0074         2      18      63 ..      12      58 ..       4      73 .. 0.71
   2 ?    5.1   4.8     0.022       6.2      70     123 ..      83     136 ..      54     144 .. 0.54

  Alignments for each domain:
  == domain 1    score: 6.6 bits;  conditional E-value: 0.0074
   TIGR02473 18 akselakaqaeferleqqLqqlekereeyeqqanekvqsg.tsaael 63
                ++ + +++++++ +l++q+++l++e  ++++ an++++ + +  a++
  MMETSP1137-20121227|1822_1 12 LQVQCTTILKTKSELQAQVDALTAENAALSSTANSSGDTAtVLNAQV 58
                56677788899999999999999999999999988888773333333 PP

  == domain 2    score: 5.1 bits;  conditional E-value: 0.022
   TIGR02473  70 irqldeaieqqqqelaelekeleakrerlleaakelkalekLkekkqkeeraee 123
                 ++ l ++++  q  +a l  +le++++  ++  ++ k++ ++++  +k+ +  +
  MMETSP1137-20121227|1822_1  83 VASLMSELQGTQARVADLTSQLEEAQTEIQARIEKSKQFANMRQILAKKNAVVK 136
                 444555555555556666666666666666666666666666655444444444 PP

>> TIGR03930  WXG100_ESAT6: WXG100 family type VII secretion target
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   1.5   0.00061      0.17       6      65 ..       9      70 ..       3      71 .. 0.79
   2 ?    2.5   2.1      0.14        37      16      61 ..      90     129 ..      78     151 .. 0.43

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 0.00061
   TIGR03930  6 peeleqaAkrfqktaqelqqelqrlrseidalqst..WeGaAaqafdaefaewkpaaerlne 65
                ++ l+   +++ kt++elq++++ l++e +al st   +G++a+  +a+ ++++++++ l++
  MMETSP1137-20121227|1822_1  9 FQKLQVQCTTILKTKSELQAQVDALTAENAALSSTanSSGDTATVLNAQVKKLEAELQSLRD 70
                56666677788889999999999999999988866558888888888888888888887765 PP

  == domain 2    score: 2.5 bits;  conditional E-value: 0.14
   TIGR03930  16 fqktaqelqqelqrlrseidalqstWeGaAaqafdaefaewkpaae 61 
                 +q+t++++ ++ ++l+  ++++      +A+ + +++fa++++ ++
  MMETSP1137-20121227|1822_1  90 LQGTQARVADLTSQLEEAQTEI------QARIEKSKQFANMRQILA 129
                 2222222222222222222222......233333444444444444 PP

>> TIGR00293  TIGR00293: prefoldin, alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.4      0.04        11      96     125 ..       3      32 ..       1      36 [. 0.63
   2 ?    5.0   1.1      0.02       5.4       5      40 ..      20      55 ..      16      68 .. 0.78
   3 ?    6.6   0.5    0.0061       1.7      91     128 ..      79     116 ..      76     117 .. 0.86
   4 ?    7.1   2.3    0.0045       1.2      83     126 ..     103     145 ..     100     148 .. 0.91

  Alignments for each domain:
  == domain 1    score: 4.0 bits;  conditional E-value: 0.04
   TIGR00293  96 eelekaieklqeelqelaseaqeieqelqq 125
                 +el+ +++klq + +++ ++  e+++++ +
  MMETSP1137-20121227|1822_1   3 KELTDKFQKLQVQCTTILKTKSELQAQVDA 32 
                 566667777777777777776666666544 PP

  == domain 2    score: 5.0 bits;  conditional E-value: 0.02
   TIGR00293  5 aaelqqlqeevealqaeiaalraliaeleeaietle 40
                 +++ +lq++v+al+ae aal ++ ++   +   l+
  MMETSP1137-20121227|1822_1 20 LKTKSELQAQVDALTAENAALSSTANSSGDTATVLN 55
                567889999999999999999999988877777776 PP

  == domain 3    score: 6.6 bits;  conditional E-value: 0.0061
   TIGR00293  91 lkkkieelekaieklqeelqelaseaqeieqelqqkqq 128
                 l + +  l ++++ +q+ +++l+s+ +e ++e+q++++
  MMETSP1137-20121227|1822_1  79 LRDDVASLMSELQGTQARVADLTSQLEEAQTEIQARIE 116
                 6677888999999999999***********99999886 PP

  == domain 4    score: 7.1 bits;  conditional E-value: 0.0045
   TIGR00293  83 dleeAieilkkkieelekaieklqeelqelaseaqeieqelqqk 126
                 +leeA   ++++ie+ +k++ ++ ++l+++ +  ++++++l++ 
  MMETSP1137-20121227|1822_1 103 QLEEAQTEIQARIEK-SKQFANMRQILAKKNAVVKDLRDQLSAN 145
                 689***********9.8999*******************99875 PP

>> TIGR02209  ftsL_broad: cell division protein FtsL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   0.5    0.0014       0.4      25      60 ..       8      43 ..       5      45 .. 0.90
   2 ?   -0.2   0.1      0.77   2.1e+02      36      50 ..      54      68 ..      50      70 .. 0.68
   3 ?    4.7   0.3     0.023       6.2      22      43 ..      93     114 ..      78     136 .. 0.66

  Alignments for each domain:
  == domain 1    score: 8.5 bits;  conditional E-value: 0.0014
   TIGR02209 25 qtrqlnselqklqaeieklqkewndLqlEvaelsrh 60
                +  +l+++ +++ + +++lq++ + L +E a+ls+ 
  MMETSP1137-20121227|1822_1  8 KFQKLQVQCTTILKTKSELQAQVDALTAENAALSST 43
                667899***************************985 PP

  == domain 2    score: -0.2 bits;  conditional E-value: 0.77
   TIGR02209 36 lqaeieklqkewndL 50
                l+a+++kl++e ++L
  MMETSP1137-20121227|1822_1 54 LNAQVKKLEAELQSL 68
                566777777777776 PP

  == domain 3    score: 4.7 bits;  conditional E-value: 0.023
   TIGR02209  22 vqhqtrqlnselqklqaeiekl 43 
                 +q+++ +l+s+l+++q+ei++ 
  MMETSP1137-20121227|1822_1  93 TQARVADLTSQLEEAQTEIQAR 114
                 4555556666666666666543 PP

>> TIGR02894  DNA_bind_RsfA: transcription factor, RsfA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   0.8    0.0053       1.4      84     135 ..      15      66 ..       1      73 [. 0.65
   2 ?    5.0   1.1      0.02       5.4      84     138 ..      82     136 ..      74     144 .. 0.61

  Alignments for each domain:
  == domain 1    score: 6.8 bits;  conditional E-value: 0.0053
   TIGR02894  84 dviefLqnlketleeaeklrkekeklkeeleslqkrneeLekeleklkkkks 135
                 ++ + L++ +e + ++++l  e+  l +  +s   +   L+ +++kl+ + +
  MMETSP1137-20121227|1822_1  15 QCTTILKTKSELQAQVDALTAENAALSSTANSSGDTATVLNAQVKKLEAELQ 66 
                 4566777777777777777777777777777777776667776666666655 PP

  == domain 2    score: 5.0 bits;  conditional E-value: 0.02
   TIGR02894  84 dviefLqnlketleeaeklrkekeklkeeleslqkrneeLekeleklkkkksvie 138
                 dv +++ +l+ t+ ++++l ++ e+ ++e+++  ++ +++++  + l kk+ v++
  MMETSP1137-20121227|1822_1  82 DVASLMSELQGTQARVADLTSQLEEAQTEIQARIEKSKQFANMRQILAKKNAVVK 136
                 4555555666666666666666666666666666666666666666666555554 PP

>> TIGR00414  serS: serine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   1.1    0.0095       2.6      34     101 ..       4      67 ..       1      72 [. 0.65
   2 ?    6.7   1.5    0.0025      0.68      37     101 ..      81     144 ..      69     153 .. 0.86

  Alignments for each domain:
  == domain 1    score: 4.8 bits;  conditional E-value: 0.0095
   TIGR00414  34 elddklkkllskieelqkkrnelskeigkkkaekkdkieelkkelkelkeeleeleaelkeleeelee 101
                 el dk +kl+++ +++ k ++el+ ++++ +ae+++    l+   ++ +   + l+a++k+le+el++
  MMETSP1137-20121227|1822_1   4 ELTDKFQKLQVQCTTILKTKSELQAQVDALTAENAA----LSSTANSSGDTATVLNAQVKKLEAELQS 67 
                 567778888888888888888888888887766665....5555555555566666666666655554 PP

  == domain 2    score: 6.7 bits;  conditional E-value: 0.0025
   TIGR00414  37 dklkkllskieelqkkrnelskeigkkkaekkdkieelkkelkelkeeleeleaelkeleeelee 101
                 d +  l s+++  q++   l+++++++++e +++ie+ +k+  ++++ l++++a +k+l+++l+ 
  MMETSP1137-20121227|1822_1  81 DDVASLMSELQGTQARVADLTSQLEEAQTEIQARIEK-SKQFANMRQILAKKNAVVKDLRDQLSA 144
                 566677888999999999999******9999999998.99**************99999999875 PP

>> TIGR03495  phage_LysB: phage lysis regulatory protein, LysB family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   2.1     0.017       4.7      50      95 ..      24      69 ..       2      80 .. 0.54
   2 ?    5.4   3.0     0.017       4.6      24      87 ..      79     138 ..      75     144 .. 0.66

  Alignments for each domain:
  == domain 1    score: 5.3 bits;  conditional E-value: 0.017
   TIGR03495 50 eallaeakrneeaqaqLrqqlaqaeallaqrekrierLlreneelR 95
                + l+a++++  ++ a+L  ++++   ++   + ++++L  e + lR
  MMETSP1137-20121227|1822_1 24 SELQAQVDALTAENAALSSTANSSGDTATVLNAQVKKLEAELQSLR 69
                3344455555555555555555555555555555555555555554 PP

  == domain 2    score: 5.4 bits;  conditional E-value: 0.017
   TIGR03495  24 araslekaekalkaqqaelekkanqleallaeakrneeaqaqLrqqlaqaeallaqrekrierL 87 
                 +r+++++  ++l+  qa ++  ++qle +++e++++ e+ +q     a++++ la+++  +++L
  MMETSP1137-20121227|1822_1  79 LRDDVASLMSELQGTQARVADLTSQLEEAQTEIQARIEKSKQ----FANMRQILAKKNAVVKDL 138
                 677788888888888899999999988888888776655544....444444444444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (158 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       485  (0.118235); expected 82.0 (0.02)
Passed bias filter:                      268  (0.065334); expected 82.0 (0.02)
Passed Vit filter:                        41  (0.00999512); expected 4.1 (0.001)
Passed Fwd filter:                        15  (0.00365675); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.36u 0.19s 00:00:00.55 Elapsed: 00:00:00.42
# Mc/sec: 496.53
//
Query:       MMETSP1137-20121227|1823_1  [L=512]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (512 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        64  (0.0156021); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.16s 00:00:00.49 Elapsed: 00:00:00.54
# Mc/sec: 1251.45
//
Query:       MMETSP1137-20121227|1824_1  [L=207]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0019   15.9   0.1        3.6    5.3   0.0    3.1  3  TIGR03830 CxxCG_CxxCG_HTH: putative zinc finger/helix-turn-helix protein, YgiT family
  ------ inclusion threshold ------
      0.028   11.1   0.0       0.25    8.0   0.0    2.3  3  TIGR02351 thiH: thiazole biosynthesis protein ThiH
        4.1    5.4   7.6        1.4    6.9   0.1    3.5  4  TIGR01639 P_fal_TIGR01639: Plasmodium falciparum uncharacterized domain TIGR01639


Domain annotation for each model (and alignments):
>> TIGR03830  CxxCG_CxxCG_HTH: putative zinc finger/helix-turn-helix protein, YgiT family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.0     0.016        22      48      85 ..       3      40 ..       1      43 [. 0.89
   2 !    5.3   0.0    0.0026       3.6      37      83 ..      58     104 ..      56     113 .. 0.88
   3 !    4.4   0.0    0.0049       6.7      34      78 ..     128     172 ..     122     188 .. 0.83

  Alignments for each domain:
  == domain 1    score: 2.7 bits;  conditional E-value: 0.016
   TIGR03830 48 kensaaiaefkrkvdglltgeeirriRkklglsqkeaa 85
                +e+++a + f ++ +g ++++e+r+i  +lg s +++a
  MMETSP1137-20121227|1824_1  3 EELKEAFRVFDKDGNGYISAAELRHIMTNLGASHTALA 40
                67899999999********************9988876 PP

  == domain 2    score: 5.3 bits;  conditional E-value: 0.0026
   TIGR03830  37 CgeelldeeeakensaaiaefkrkvdglltgeeirriRkklglsqke 83 
                 ++e  l+ee++ e+++a + f ++ dg +t +e+  + ++lg + +e
  MMETSP1137-20121227|1824_1  58 ADETQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTE 104
                 589999***************************99999999876655 PP

  == domain 3    score: 4.4 bits;  conditional E-value: 0.0049
   TIGR03830  34 CpaCgeelldeeeakensaaiaefkrkvdglltgeeirriRkklg 78 
                 C+    ++ d ++++e+++a + f ++ +g ++++e+r+i  +lg
  MMETSP1137-20121227|1824_1 128 CTLMARKMKDTDSEEELKEAFRVFDKDGNGFISAAELRHIMTNLG 172
                 6666677889999***************************99987 PP

>> TIGR02351  thiH: thiazole biosynthesis protein ThiH
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0     0.099   1.4e+02     283     307 ..       8      32 ..       4      42 .. 0.77
   2 ?    8.0   0.0   0.00018      0.25     256     301 ..      46      92 ..      35     100 .. 0.89
   3 ?   -0.9   0.0     0.096   1.3e+02     281     307 ..     145     171 ..     130     180 .. 0.79

  Alignments for each domain:
  == domain 1    score: -1.0 bits;  conditional E-value: 0.099
   TIGR02351 283 ayRlfdpeveislstReskkfRdnv 307
                 a+R+fd++ +  +s+ e +++  n+
  MMETSP1137-20121227|1824_1   8 AFRVFDKDGNGYISAAELRHIMTNL 32 
                 9*********999998866655443 PP

  == domain 2    score: 8.0 bits;  conditional E-value: 0.00018
   TIGR02351 256 vpRlRPvtn.glkpkkevddkelvqlilayRlfdpeveislstResk 301
                 + R+ P t+ +++ ++++++++++    a+ lfd++ + ++ t+e  
  MMETSP1137-20121227|1824_1  46 CSRIPPHTQrNMADETQLTEEQIAEFKEAFSLFDKDGDGTITTKELG 92 
                 7899999887999999****************************965 PP

  == domain 3    score: -0.9 bits;  conditional E-value: 0.096
   TIGR02351 281 ilayRlfdpeveislstReskkfRdnv 307
                   a+R+fd++ +  +s+ e +++  n+
  MMETSP1137-20121227|1824_1 145 KEAFRVFDKDGNGFISAAELRHIMTNL 171
                 569999999999999998887776665 PP

>> TIGR01639  P_fal_TIGR01639: Plasmodium falciparum uncharacterized domain TIGR01639
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.1      0.13   1.8e+02       8      17 ..      61      70 ..      58      71 .. 0.85
   2 ?   -1.1   0.0      0.32   4.4e+02      11      21 ..     103     113 ..      86     117 .. 0.75
   3 ?   -1.2   0.1      0.35   4.8e+02      10      18 ..     139     147 ..     134     154 .. 0.77
   4 ?    6.9   0.1     0.001       1.4       3      21 ..     168     186 ..     166     190 .. 0.87

  Alignments for each domain:
  == domain 1    score: 0.2 bits;  conditional E-value: 0.13
   TIGR01639  8 kkltkEelne 17
                 +lt+E++ e
  MMETSP1137-20121227|1824_1 61 TQLTEEQIAE 70
                58******87 PP

  == domain 2    score: -1.1 bits;  conditional E-value: 0.32
   TIGR01639  11 tkEelnelins 21 
                 t+ el ++in+
  MMETSP1137-20121227|1824_1 103 TEAELVDMINE 113
                 77788888886 PP

  == domain 3    score: -1.2 bits;  conditional E-value: 0.35
   TIGR01639  10 ltkEelnel 18 
                  ++Eel+e 
  MMETSP1137-20121227|1824_1 139 DSEEELKEA 147
                 599**9985 PP

  == domain 4    score: 6.9 bits;  conditional E-value: 0.001
   TIGR01639   3 yndlskkltkEelnelins 21 
                  ++l  klt+Ee +e++++
  MMETSP1137-20121227|1824_1 168 MTNLGEKLTDEEVDEMLRE 186
                 578999***********97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (207 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       186  (0.0453437); expected 82.0 (0.02)
Passed bias filter:                      154  (0.0375427); expected 82.0 (0.02)
Passed Vit filter:                        18  (0.0043881); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.23u 0.19s 00:00:00.42 Elapsed: 00:00:00.43
# Mc/sec: 635.39
//
Query:       MMETSP1137-20121227|1825_1  [L=517]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (517 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        89  (0.0216967); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.16s 00:00:00.50 Elapsed: 00:00:00.44
# Mc/sec: 1550.87
//
Query:       MMETSP1137-20121227|1826_1  [L=131]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.013   12.8   0.0       0.04   11.3   0.0    1.7  1  TIGR02280 PaaB1: phenylacetate degradation probable enoyl-CoA hydratase PaaB


Domain annotation for each model (and alignments):
>> TIGR02280  PaaB1: phenylacetate degradation probable enoyl-CoA hydratase PaaB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   9.8e-06      0.04      33      69 ..      53      89 ..       9     118 .. 0.69

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 9.8e-06
   TIGR02280 33 ealerverddvrallltGaGrGfcaGqdlsernvtkg 69
                e+ + v++ dvra+ll  +G  f++G d+ + +  ++
  MMETSP1137-20121227|1826_1 53 ESSDPVQNGDVRAILLEATGPTFSSGHDFRDFQGASQ 89
                3345577789*******************99876655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (131 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        83  (0.020234); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.17u 0.10s 00:00:00.27 Elapsed: 00:00:00.54
# Mc/sec: 320.20
//
Query:       MMETSP1137-20121227|1827_1  [L=903]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (903 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        96  (0.0234032); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.57u 0.15s 00:00:00.72 Elapsed: 00:00:00.93
# Mc/sec: 1281.57
//
Query:       MMETSP1137-20121227|1828_1  [L=54]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        83  (0.020234); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.18s 00:00:00.28 Elapsed: 00:00:00.25
# Mc/sec: 285.10
//
Query:       MMETSP1137-20121227|1829_1  [L=434]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (434 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        41  (0.00999512); expected 82.0 (0.02)
Passed bias filter:                       39  (0.00950756); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.18s 00:00:00.47 Elapsed: 00:00:00.36
# Mc/sec: 1591.20
//
Query:       MMETSP1137-20121227|1830_1  [L=500]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.2e-08   32.4   0.1    1.2e-08   32.4   0.1    2.0  2  TIGR00601 rad23: UV excision repair protein Rad23


Domain annotation for each model (and alignments):
>> TIGR00601  rad23: UV excision repair protein Rad23
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.4   0.1     3e-12   1.2e-08       8     129 ..      20     144 ..      13     190 .. 0.73
   2 ?   -2.9   0.6      0.16   6.5e+02      84     120 ..     275     314 ..     272     354 .. 0.63

  Alignments for each domain:
  == domain 1    score: 32.4 bits;  conditional E-value: 3e-12
   TIGR00601   8 lkqqkfkidlepdetvkelKekiesekgkdayevaqqkLiyaGkiLsDdktvke....ykikekdfvvvmvskkKavkakaaePaatpesaptptp.satpasvaekksaaPasaveeessaeeeat 129
                 lk+  +k+++  +  v ++K +i++     + + a+q+LiyaG++L+D++  +e     ++ke+     +++ +K+  a+  + + +p++ p p+   a p+s ++ +++ P +a + +s ++ ++ 
  MMETSP1137-20121227|1830_1  20 LKKGDLKLQVPLEASVAQIKSQIAEMLEEPTLP-AEQRLIYAGRLLADNTCAREllkqHDLKEQHVF-HLMTPTKSEAASDFSASNAPSLGPVPSSlPARPSSFSPLSASMPVAAHPSGSFTPSSTE 144
                 899999********************9977777.6789***********986652211567776644.45566666665555666666666666655566666666666666666666555544443 PP

  == domain 2    score: -2.9 bits;  conditional E-value: 0.16
   TIGR00601  84 aaePaatpesaptptp.satpasvaekks..aaPasavee 120
                 a++Pa+ p++ p + p + ++as+ ++ s  a P +a ee
  MMETSP1137-20121227|1830_1 275 ATHPATHPATYPGTYPgTYPAASPEAEVSgvALPHAAEEE 314
                 5678888888888777444455554433311334444433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (500 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        71  (0.0173086); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.16s 00:00:00.50 Elapsed: 00:00:00.53
# Mc/sec: 1245.18
//
Query:       MMETSP1137-20121227|1832_1  [L=258]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.032   12.2   0.0      0.045   11.7   0.0    1.2  1  TIGR01876 cas_Cas5d: CRISPR-associated protein Cas5, subtype I-C/DVULG


Domain annotation for each model (and alignments):
>> TIGR01876  cas_Cas5d: CRISPR-associated protein Cas5, subtype I-C/DVULG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   1.1e-05     0.045      48     107 ..      69     128 ..      66     184 .. 0.76

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 1.1e-05
   TIGR01876  48 vireikvlnpikleskgvreveietarqlaavlyLkDvayrlkaelefnedredLrkDrn 107
                  ire ++++ ++ +   v ++ i+ ++ l+a  yLk   y l+ ++   +dr++L++  +
  MMETSP1137-20121227|1832_1  69 QIREAQIIEFVEKKISDVTSIPIDHGEPLQALRYLKGQEYTLHPDFFDPQDRNELKNGGQ 128
                 58999999***999********************************99999999987544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (258 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        68  (0.0165773); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.21u 0.15s 00:00:00.36 Elapsed: 00:00:00.37
# Mc/sec: 920.36
//
Query:       MMETSP1137-20121227|1833_1  [L=307]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (307 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        63  (0.0153584); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.16s 00:00:00.42 Elapsed: 00:00:00.59
# Mc/sec: 686.79
//
Query:       MMETSP1137-20121227|1834_1  [L=178]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (178 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        48  (0.0117016); expected 82.0 (0.02)
Passed bias filter:                       39  (0.00950756); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.17s 00:00:00.37 Elapsed: 00:00:00.30
# Mc/sec: 783.14
//
Query:       MMETSP1137-20121227|1835_1  [L=763]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00052   17.6   0.8     0.0096   13.5   0.0    3.1  3  TIGR02552 LcrH_SycD: type III secretion low calcium response chaperone LcrH/SycD
  ------ inclusion threshold ------
      0.032   11.1   0.0      0.049   10.4   0.0    1.2  1  TIGR01123 ilvE_II: branched-chain amino acid aminotransferase


Domain annotation for each model (and alignments):
>> TIGR02552  LcrH_SycD: type III secretion low calcium response chaperone LcrH/SycD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.9   0.0       1.1   2.2e+03      66      79 ..     128     141 ..     121     143 .. 0.68
   2 !   13.5   0.0   4.7e-06    0.0096      60     130 ..     174     243 ..     169     248 .. 0.81
   3 ?    0.7   0.0     0.043        88      31      48 ..     522     539 ..     503     546 .. 0.71

  Alignments for each domain:
  == domain 1    score: -3.9 bits;  conditional E-value: 1.1
   TIGR02552  66 keyeeAiaaYalaa 79 
                 +e+++AiaaY   a
  MMETSP1137-20121227|1835_1 128 GEFARAIAAYRQGA 141
                 56777888887665 PP

  == domain 2    score: 13.5 bits;  conditional E-value: 4.7e-06
   TIGR02552  60 aclqalkeyeeAiaaYalaaaldlddprpvyhaaecllalgekeeAlkaLklaieiaeekeeyselkerae 130
                  c+ +l+e+  A++a +  + ++ d+ ++++++++ +++lg+ +eA ++L++a+++  +++   +l + +e
  MMETSP1137-20121227|1835_1 174 NCRLKLEEWPAAVEACSEVL-ARGDNRKAFFQRGKAHVQLGKLQEAHDDLQRAVAMEPSDSVVRALLNDVE 243
                 57777777777777766544.5679999*****************************99987777766655 PP

  == domain 3    score: 0.7 bits;  conditional E-value: 0.043
   TIGR02552  31 qgkyeeAeklFqlLaald 48 
                  ++y  A+++F+lL++l 
  MMETSP1137-20121227|1835_1 522 VKQYVSANTVFALLVLLS 539
                 467888888888888765 PP

>> TIGR01123  ilvE_II: branched-chain amino acid aminotransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   2.4e-05     0.049     201     259 ..     137     196 ..      98     199 .. 0.83

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 2.4e-05
   TIGR01123 201 tkdgelv.ttplsesiLegvtresllelakdlgleveereiaidelkaaveaGeivfacG 259
                 +++g ++  + l ++ ++gv ++s+lel+  l+l+ ++ +++++e+ aavea ++v+a G
  MMETSP1137-20121227|1835_1 137 YRQGAKLlQSVLDKKRVSGVDKTSVLELMDALQLNSSNCRLKLEEWPAAVEACSEVLARG 196
                 555544404445667789***********************************9999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (763 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       179  (0.0436373); expected 82.0 (0.02)
Passed bias filter:                      115  (0.0280351); expected 82.0 (0.02)
Passed Vit filter:                        21  (0.00511945); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.53u 0.16s 00:00:00.69 Elapsed: 00:00:00.59
# Mc/sec: 1706.91
//
Query:       MMETSP1137-20121227|1836_1  [L=131]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (131 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       103  (0.0251097); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.12s 00:00:00.29 Elapsed: 00:00:00.30
# Mc/sec: 576.35
//
Query:       MMETSP1137-20121227|1837_1  [L=139]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (139 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        81  (0.0197465); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.17s 00:00:00.33 Elapsed: 00:00:00.30
# Mc/sec: 611.55
//
Query:       MMETSP1137-20121227|1838_1  [L=426]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (426 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       113  (0.0275475); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.16s 00:00:00.44 Elapsed: 00:00:00.49
# Mc/sec: 1147.50
//
Query:       MMETSP1137-20121227|1839_1  [L=138]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (138 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        37  (0.00901999); expected 82.0 (0.02)
Passed bias filter:                       37  (0.00901999); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.12s 00:00:00.28 Elapsed: 00:00:00.27
# Mc/sec: 674.61
//
Query:       MMETSP1137-20121227|1840_1  [L=614]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (614 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       205  (0.0499756); expected 82.0 (0.02)
Passed bias filter:                      107  (0.0260848); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.18s 00:00:00.62 Elapsed: 00:00:00.57
# Mc/sec: 1397.26
//
Query:       MMETSP1137-20121227|1841_1  [L=404]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (404 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       127  (0.0309605); expected 82.0 (0.02)
Passed bias filter:                      104  (0.0253535); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.14s 00:00:00.45 Elapsed: 00:00:00.37
# Mc/sec: 1441.18
//
Query:       MMETSP1137-20121227|1842_1  [L=380]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   3.3e-122  406.8   0.0   1.7e-121  404.5   0.0    1.8  1  TIGR01235 pyruv_carbox: pyruvate carboxylase
    2.7e-41  139.5   0.0    9.9e-27   91.4   0.0    2.1  2  TIGR01108 oadA: oxaloacetate decarboxylase alpha subunit
    6.9e-13   45.0   0.3    8.4e-13   44.7   0.2    1.0  1  TIGR02712 urea_carbox: urea carboxylase
    8.7e-08   29.0   5.4    1.2e-07   28.6   3.8    1.1  1  TIGR01348 PDHac_trf_long: dihydrolipoyllysine-residue acetyltransferase
    6.2e-07   26.5   0.4    0.00028   17.8   0.2    2.2  2  TIGR01843 type_I_hlyD: type I secretion membrane fusion protein, HlyD family
    6.4e-07   26.5   0.9     0.0029   14.5   0.3    2.2  2  TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit
    1.6e-06   26.5   0.4    2.5e-06   25.9   0.3    1.3  1  TIGR00531 BCCP: acetyl-CoA carboxylase, biotin carboxyl carrier protein
     0.0006   16.6   1.9      0.026   11.3   0.5    2.1  2  TIGR03794 NHLM_micro_HlyD: NHLM bacteriocin system secretion protein
    0.00071   16.4   0.4    0.00096   15.9   0.3    1.1  1  TIGR01936 nqrA: NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit
     0.0012   15.6   1.7      0.033   10.8   0.0    1.8  2  TIGR02927 SucB_Actino: 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase
     0.0023   15.0   0.3     0.0034   14.5   0.2    1.3  1  TIGR01347 sucB: dihydrolipoyllysine-residue succinyltransferase, E2 component of oxoglutarate dehydrogenase (succinyl-transferring) complex
     0.0042   13.9   1.0       0.33    7.7   0.1    2.1  2  TIGR00998 8a0101: efflux pump membrane protein
      0.009   13.0   0.1      0.015   12.3   0.1    1.3  1  TIGR00999 8a0102: membrane fusion protein cluster 2 protein


Domain annotation for each model (and alignments):
>> TIGR01235  pyruv_carbox: pyruvate carboxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  404.5   0.0  5.5e-124  1.7e-121     758    1142 ..       2     378 ..       1     379 [. 0.96

  Alignments for each domain:
  == domain 1    score: 404.5 bits;  conditional E-value: 5.5e-124
   TIGR01235  758 vdvvdvavdslsGltsqPslgalvaaleGseldtglnveevrelsayweevrklyaafesdlkspdaevylheiPGGqytnlkeqakslGlgdrweevkkayreanqllGdivkvtPsskvvGdlalfmvsnkltaddvvekaeeldfPdsvvellkGaiGqPhgGfPeklrkkvlkde......kkltvrPGellepldlekikkdlkeklerevsdldvvsyalyPkvfedylkaresyGdvsvldtraflsglkvgeeleveiekGktliikllavgetksdgerevyfelnGqlrkvkvkdrsakaevavrskadkgnkahvgapmpGvvievkvkaGskvekGdvlvvleamkmetvvqapkdGtvkevlvkdGekidaedlllvl 1142
                  +dvvd a+d++sGltsqPslgal+ al+G eldtg ++++++ l+ ywe+ r+ly +fes+  s++++vy heiPGGqytn      + G                  + di kvtPsskvvGd+a+fmvs++l  +dv+ +ae+l+fPdsvv++++GaiGqP+gGfPe+lr+k++k++      + +++rPG  l p+d+ek + +l e ++ e++d+dv+syalyP+v+ +++ +r +yGdv  l+t+ fl ++++g+e+e ei +G+++++kl+++ e++ +g r++ fe+nG+   + v+d s + + +vr+k + g+   vgapmpGvv+++kvk G+kve+G++lvvl+amkmet++qa ++Gt+ ++  + G+k+da+dll+++
  MMETSP1137-20121227|1842_1    2 ADVVDGAIDAMSGLTSQPSLGALIGALKGGELDTGYDLNQLEPLNNYWERARRLYLPFESGQLSGSSDVYMHEIPGGQYTNXALPGDAAGAR--------------GQVSDIPKVTPSSKVVGDMAQFMVSQQLEPEDVIAQAESLSFPDSVVQYFQGAIGQPPGGFPEPLRSKIIKGRtladgkPFYEGRPGVDLAPFDFEKARAKLGELYKGEIDDKDVLSYALYPQVYAEWQDFRAAYGDVAYLQTHLFLNPMREGDEVELEIAEGRSFLLKLVSMPEPDAEGIRNMIFEVNGERWFLPVSDASVQGTSTVREKVKSGDVGAVGAPMPGVVVDIKVKDGDKVEEGEPLVVLSAMKMETMIQASTSGTISRLICNVGDKVDADDLLIKI 378 
                  7********************************************************************************98877666643..............34679*****************************************************************9852222214589*******************************************************************************************************************************************************************************************************987 PP

>> TIGR01108  oadA: oxaloacetate decarboxylase alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.1   0.0   1.7e-15   5.3e-13     218     299 ..       2      83 ..       1      86 [. 0.98
   2 !   91.4   0.0   3.1e-29   9.9e-27     329     582 .]      99     375 ..      90     375 .. 0.72

  Alignments for each domain:
  == domain 1    score: 46.1 bits;  conditional E-value: 1.7e-15
   TIGR01108 218 vdviDtaisslsagtshpatealvaalretgydtgldiellkeiadyfrevrkkyakfeselkgiDsrilvaqvPGGmlsnl 299
                 +dv+D ai ++s+ ts+p+  al+ al++ + dtg d+++l+ +++y ++ r+ y  fes      s + ++ +PGG ++n 
  MMETSP1137-20121227|1842_1   2 ADVVDGAIDAMSGLTSQPSLGALIGALKGGELDTGYDLNQLEPLNNYWERARRLYLPFESGQLSGSSDVYMHEIPGGQYTNX 83 
                 69******************************************************************************95 PP

  == domain 2    score: 91.4 bits;  conditional E-value: 3.1e-29
   TIGR01108 329 iPLvtPtsqivGtqavlnvltG.eryktitk........etkdlvkGeyGrtPapikaelvkkvlgde.....kailevrPa.dllepeldklraevreagaekesdeDvLlvalfpevgkkflenren.........pvafeeaveekkieeeavkvvakaveeaasavytv...evegkaeev.kvseskevskleasaaaaksagtvaakakastdvtaplaGsivkvkvseGdevkeGevllvleamkmeteikaaaaGiveeilvkkGdkvavgevl 582
                 iP vtP s++vG  a + v    e  ++i++         + ++ +G  G++P+   + l+ k++++      k+ +e rP+ dl + +++k ra++ e  + +  d+DvL++al+p+v  ++ + r+                   + + e ++v+    + ++   + + +     eg  + + +v+ ++    ++ ++++++s+  +  k++ ++ v ap++G +v++kv++Gd+v+eGe l+vl amkmet i+a+++G+++ +++++Gdkv +++ l
  MMETSP1137-20121227|1842_1  99 IPKVTPSSKVVGDMAQFMVSQQlEPEDVIAQaeslsfpdSVVQYFQGAIGQPPGGFPEPLRSKIIKGRtladgKPFYEGRPGvDLAPFDFEKARAKLGELYKGEIDDKDVLSYALYPQVYAEWQDFRAAygdvaylqtH-----LFLNPMREGDEVELEIAEGRSFLLKLVSMpepDAEGIRNMIfEVNGERWFLPVSDASVQGTSTVREKVKSGDVGAVGAPMPGVVVDIKVKDGDKVEEGEPLVVLSAMKMETMIQASTSGTISRLICNVGDKVDADDLL 375
                 89**********98876665432555666642122222157799**********9999998888776544444999*****84666679*********999999999***************99999987765444442.....2222233334433333333332222222211123343333213334444455555566666666667889999*************************************************************9976 PP

>> TIGR02712  urea_carbox: urea carboxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.7   0.2   2.7e-15   8.4e-13    1124    1200 ..     302     378 ..     275     379 .. 0.85

  Alignments for each domain:
  == domain 1    score: 44.7 bits;  conditional E-value: 2.7e-15
   TIGR02712 1124 eeaeleegavaveselagrlWkvlvevgdeveagdklviveamkmelavsapvaGkvkkilvkeGdaveaGdalvvl 1200
                   e+  + ++ av +++ g +  + v+ gd+ve+g++lv++ amkme++++a+++G++ ++ ++ Gd+v+a d+l+ +
  MMETSP1137-20121227|1842_1  302 REKVKSGDVGAVGAPMPGVVVDIKVKDGDKVEEGEPLVVLSAMKMETMIQASTSGTISRLICNVGDKVDADDLLIKI 378 
                  333445567789************************************************************99977 PP

>> TIGR01348  PDHac_trf_long: dihydrolipoyllysine-residue acetyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.6   3.8   3.7e-10   1.2e-07     150     228 ..     297     378 ..     289     380 .] 0.82

  Alignments for each domain:
  == domain 1    score: 28.6 bits;  conditional E-value: 3.7e-10
   TIGR01348 150 aqasgvkevkvPdiGdae...kvevievlvkvGdtvsadqslitlesdkaslevPapasGvvkslkvkvGdkvktGdlilvl 228
                 + ++  ++vk  d+G  +    + v+++ vk Gd+v+++ +l+ l + k    + a+ sG++ +l  +vGdkv+  dl++++
  MMETSP1137-20121227|1842_1 297 GTSTVREKVKSGDVGAVGapmPGVVVDIKVKDGDKVEEGEPLVVLSAMKMETMIQASTSGTISRLICNVGDKVDADDLLIKI 378
                 4445556688888877541115789**************************************************9999876 PP

>> TIGR01843  type_I_hlyD: type I secretion membrane fusion protein, HlyD family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.2   8.8e-07   0.00028      42      80 ..     309     347 ..     298     349 .. 0.84
   2 !    7.1   0.0    0.0015      0.49      45      75 ..     349     379 ..     346     380 .] 0.94

  Alignments for each domain:
  == domain 1    score: 17.8 bits;  conditional E-value: 8.8e-07
   TIGR01843  42 nvkvvQhlegGivreIlVreGdrVkaGqvLveLdatsve 80 
                  v +v     G+v  I V++Gd+V++G++Lv L a+++e
  MMETSP1137-20121227|1842_1 309 DVGAVGAPMPGVVVDIKVKDGDKVEEGEPLVVLSAMKME 347
                 55556666679**********************998875 PP

  == domain 2    score: 7.1 bits;  conditional E-value: 0.0015
   TIGR01843  45 vvQhlegGivreIlVreGdrVkaGqvLveLd 75 
                 ++Q  + G++ +++ + Gd+V a ++L+++d
  MMETSP1137-20121227|1842_1 349 MIQASTSGTISRLICNVGDKVDADDLLIKID 379
                 79***************************99 PP

>> TIGR01730  RND_mfp: efflux transporter, RND family, MFP subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.3     9e-06    0.0029       6      57 ..     290     341 ..     288     347 .. 0.89
   2 !   10.7   0.0   0.00012     0.039      25      59 ..     346     380 .]     342     380 .] 0.85

  Alignments for each domain:
  == domain 1    score: 14.5 bits;  conditional E-value: 9e-06
   TIGR01730   6 vesetleesrefpgsleavdeaeiaaevaGkvtkisvkeGqkVkkGqlLakl 57 
                 v++ +++ + ++  ++++ d  ++ a  +G+v  i+vk+G+kV +G++L+ l
  MMETSP1137-20121227|1842_1 290 VSDASVQGTSTVREKVKSGDVGAVGAPMPGVVVDIKVKDGDKVEEGEPLVVL 341
                 6677888899999999999******************************987 PP

  == domain 2    score: 10.7 bits;  conditional E-value: 0.00012
   TIGR01730  25 deaeiaaevaGkvtkisvkeGqkVkkGqlLakldd 59 
                 +e+ i+a ++G + ++  + G+kV + +lL+k+d+
  MMETSP1137-20121227|1842_1 346 METMIQASTSGTISRLICNVGDKVDADDLLIKIDP 380
                 57889999999999999999999999999999985 PP

>> TIGR00531  BCCP: acetyl-CoA carboxylase, biotin carboxyl carrier protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.9   0.3   8.1e-09   2.5e-06      82     155 ..     305     379 ..     288     380 .] 0.81

  Alignments for each domain:
  == domain 1    score: 25.9 bits;  conditional E-value: 8.1e-09
   TIGR00531  82 vlsPmvGtFYrapsPeakp..fvevGdkvkkgdvvciveAmklmneieaevagkvveilvedgqpveygepLivie 155
                 v+s  vG    ap P+      v+ Gdkv++g+ + ++ Amk+   i a ++g++  ++ + g+ v+ ++ Li+i+
  MMETSP1137-20121227|1842_1 305 VKSGDVGAV-GAPMPGVVVdiKVKDGDKVEEGEPLVVLSAMKMETMIQASTSGTISRLICNVGDKVDADDLLIKID 379
                 555556654.456666544004667************************************************997 PP

>> TIGR03794  NHLM_micro_HlyD: NHLM bacteriocin system secretion protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.3   0.5   8.2e-05     0.026      53      99 ..     305     351 ..     290     352 .. 0.81
   2 !    6.9   0.1    0.0017      0.53     251     284 ..     345     378 ..     339     380 .] 0.70

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 8.2e-05
   TIGR03794  53 ikssgvvtiqskgsGqvidlkvkvGdqvkkgdvvarieqpelrerlq 99 
                 +ks+ v  + ++  G+v+d+kvk Gd+v+ g+ + +++ ++++  +q
  MMETSP1137-20121227|1842_1 305 VKSGDVGAVGAPMPGVVVDIKVKDGDKVEEGEPLVVLSAMKMETMIQ 351
                 46788999999999*****************9999999888777665 PP

  == domain 2    score: 6.9 bits;  conditional E-value: 0.0017
   TIGR03794 251 nlnteivsqhdGrvlevsltkGdlVeagaslasl 284
                 +++t i+++ +G++  + ++ Gd V+a+  l+++
  MMETSP1137-20121227|1842_1 345 KMETMIQASTSGTISRLICNVGDKVDADDLLIKI 378
                 5667777777777777777777777777777766 PP

>> TIGR01936  nqrA: NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.3   3.1e-06   0.00096      10      96 ..     294     380 .]     291     380 .] 0.85

  Alignments for each domain:
  == domain 1    score: 15.9 bits;  conditional E-value: 3.1e-06
   TIGR01936  10 slkGkpkeqvlaekadvkkvavlgedfeglkpkvkvregDkvkagsvlaedKk.fpevkftspvsGevvai..nRGeKRvllsvvikkdg 96 
                 s++G+   +++ ek+++  v  +g +  g+   +kv+ gDkv++g++l+   +   e+++ + +sG+++ +  n G+K    ++ ik d+
  MMETSP1137-20121227|1842_1 294 SVQGT---STVREKVKSGDVGAVGAPMPGVVVDIKVKDGDKVEEGEPLVVLSAmKMETMIQASTSGTISRLicNVGDKVDADDLLIKIDP 380
                 67777...88999**********************************9876551579999********8743488999888888888775 PP

>> TIGR02927  SucB_Actino: 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.5     0.018       5.8      48      76 ..     313     341 ..     298     349 .. 0.71
   2 !   10.8   0.0   0.00011     0.033     129     162 ..     344     377 ..     341     379 .. 0.80

  Alignments for each domain:
  == domain 1    score: 3.4 bits;  conditional E-value: 0.018
   TIGR02927  48 ipspaaGvlleikaeeddtvevGgvlaii 76 
                 + +p+ Gv+++ik+++ d ve G  l ++
  MMETSP1137-20121227|1842_1 313 VGAPMPGVVVDIKVKDGDKVEEGEPLVVL 341
                 55677777777777777777777666554 PP

  == domain 2    score: 10.8 bits;  conditional E-value: 0.00011
   TIGR02927 129 vempelGesvteGtvtrwlkavGdtvevdeplle 162
                 ++m  + ++ t Gt++r + +vGd+v++d+ l++
  MMETSP1137-20121227|1842_1 344 MKMETMIQASTSGTISRLICNVGDKVDADDLLIK 377
                 5677777888999999999999999999998876 PP

>> TIGR01347  sucB: dihydrolipoyllysine-residue succinyltransferase, E2 component of oxoglutarate dehydrogenase (succinyl-transferring) complex
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.2   1.1e-05    0.0034      17      74 ..     321     378 ..     313     380 .] 0.92

  Alignments for each domain:
  == domain 1    score: 14.5 bits;  conditional E-value: 1.1e-05
   TIGR01347  17 vaewekkvGdavkkdeliveletDkvslevaseadGvleellekegdtvesgevlael 74 
                 v++ + k Gd+v+++e +v l   k++  ++++++G++++l  + gd+v +++ l ++
  MMETSP1137-20121227|1842_1 321 VVDIKVKDGDKVEEGEPLVVLSAMKMETMIQASTSGTISRLICNVGDKVDADDLLIKI 378
                 66677789*******************************************9999887 PP

>> TIGR00998  8a0101: efflux pump membrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.7   0.1     0.001      0.33     207     235 ..     313     341 ..     292     347 .. 0.71
   2 !    5.2   0.0    0.0057       1.8      43      75 ..     348     380 .]     341     380 .] 0.78

  Alignments for each domain:
  == domain 1    score: 7.7 bits;  conditional E-value: 0.001
   TIGR00998 207 iraPvdGvvarrkvqvGqvvsagqplmal 235
                 + aP+ Gvv   kv+ G++v  g+pl+ l
  MMETSP1137-20121227|1842_1 313 VGAPMPGVVVDIKVKDGDKVEEGEPLVVL 341
                 56777777777777777777777776543 PP

  == domain 2    score: 5.2 bits;  conditional E-value: 0.0057
   TIGR00998  43 lsvlsqvsGkvievlkddtdaVkqGdvLvklDp 75 
                  ++ +  sG + ++  + +d+V + d+L+k+Dp
  MMETSP1137-20121227|1842_1 348 TMIQASTSGTISRLICNVGDKVDADDLLIKIDP 380
                 466677888888888888888888888888886 PP

>> TIGR00999  8a0102: membrane fusion protein cluster 2 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.3   0.1   4.7e-05     0.015      84     138 ..     301     353 ..     292     367 .. 0.75

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 4.7e-05
   TIGR00999  84 lreakasasv.evrsPfdGyiveksvtlGdyvapqaelfrvadlsavkveaevpak 138
                 +re+++s  v +v +P+ G++v+ +v+ Gd v+++ e++ v+  sa+k+e  ++a 
  MMETSP1137-20121227|1842_1 301 VREKVKSGDVgAVGAPMPGVVVDIKVKDGDKVEEG-EPLVVL--SAMKMETMIQAS 353
                 566766666779***********************.555554..444555555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (380 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       102  (0.0248659); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                        21  (0.00511945); expected 4.1 (0.001)
Passed Fwd filter:                        13  (0.00316919); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.47u 0.17s 00:00:00.64 Elapsed: 00:00:00.59
# Mc/sec: 850.10
//
Query:       MMETSP1137-20121227|1843_1  [L=270]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (270 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        60  (0.014627); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.14s 00:00:00.36 Elapsed: 00:00:00.33
# Mc/sec: 1079.91
//
Query:       MMETSP1137-20121227|1844_1  [L=619]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (619 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        74  (0.01804); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.13s 00:00:00.51 Elapsed: 00:00:00.52
# Mc/sec: 1571.18
//
Query:       MMETSP1137-20121227|1845_1  [L=237]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0035   14.3   0.1      0.016   12.1   0.0    1.9  2  TIGR00391 hydA: hydrogenase (NiFe) small subunit (hydA)


Domain annotation for each model (and alignments):
>> TIGR00391  hydA: hydrogenase (NiFe) small subunit (hydA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.0     0.025     1e+02       1      31 [.     106     136 ..     106     147 .. 0.84
   2 !   12.1   0.0     4e-06     0.016     119     174 ..     146     203 ..     140     212 .. 0.82

  Alignments for each domain:
  == domain 1    score: -0.3 bits;  conditional E-value: 0.025
   TIGR00391   1 neeetlidefkraGisrrdllkyaallatal 31 
                 ne++++++ ++r+  +r++++k  + + t l
  MMETSP1137-20121227|1845_1 106 NEDKQMKKRMQRRDFQRKEWVKVLSNIETEL 136
                 78999*****************999998877 PP

  == domain 2    score: 12.1 bits;  conditional E-value: 4e-06
   TIGR00391 119 veGsiPlgeegllcisagepiveklrkaaegaaaiiai.GtcssfG.gvqaarpnPtn 174
                   G  P+g++ ++c++ g+   e  r   +gaa+++ai G+c +    + a + nP +
  MMETSP1137-20121227|1845_1 146 TAGITPKGQDFIWCLVRGDESEESTRADDDGAATVFAIdGACRCCQfPMTAGKLNPKQ 203
                 46889********************************977776543146677778876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (237 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       123  (0.0299854); expected 82.0 (0.02)
Passed bias filter:                      104  (0.0253535); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.23u 0.18s 00:00:00.41 Elapsed: 00:00:00.36
# Mc/sec: 868.93
//
Query:       MMETSP1137-20121227|1846_1  [L=57]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.018   12.9   0.1      0.022   12.6   0.0    1.2  1  TIGR03889 nitrile_acc: nitrile hydratase accessory protein


Domain annotation for each model (and alignments):
>> TIGR03889  nitrile_acc: nitrile hydratase accessory protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   5.5e-06     0.022      48      73 ..       3      28 ..       1      29 [. 0.86

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 5.5e-06
   TIGR03889 48 ddYydaWlaaLeklvvekglaaeedi 73
                 ++y+ W aaLe l +++  a+ +d+
  MMETSP1137-20121227|1846_1  3 SEWYNIWCAALECLCTARASADIDDV 28
                379**************999987775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        43  (0.0104827); expected 82.0 (0.02)
Passed bias filter:                       42  (0.0102389); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.11u 0.15s 00:00:00.26 Elapsed: 00:00:00.28
# Mc/sec: 259.43
//
Query:       MMETSP1137-20121227|1847_1  [L=458]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.2e-28   98.1   1.3    4.4e-16   56.6   0.0    3.1  2  TIGR03417 chol_sulfatase: choline-sulfatase


Domain annotation for each model (and alignments):
>> TIGR03417  chol_sulfatase: choline-sulfatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.8   0.4   4.5e-13   1.8e-09       9     196 ..       1     193 [.       1     204 [. 0.80
   2 !   56.6   0.0   1.1e-19   4.4e-16     253     421 ..     225     433 ..     213     451 .. 0.73

  Alignments for each domain:
  == domain 1    score: 34.8 bits;  conditional E-value: 4.5e-13
   TIGR03417   9 mvdqlagtllpaygpaevlkaPnlkrlaarsvvfdnaytasPlcaParasllsGklPsrigvydnaaefasdiptyahylraaGyktalsGk...mhfvGp...d......qlhGfeerlttdiyPadfgwtpdydkpeeridwyhnlssvleaGvavitnql..eyddevafkakqklydlarekdarPfcltvslthPhd 196
                 m+d l    l+  g  +++ +P++++la+ +  f+nay+   +caP+ra+l++G+   ++      a  ++  p     l+ aGy+ta  Gk   m  v p   d        hGf++ l        +   p+y + ++   w h l++   + +a ++n    +y  +v f+ +   +  +r+k+  Pf    s+t Ph 
  MMETSP1137-20121227|1847_1   1 MADDLGMGELSYLGS-SYISTPAIDELAKSGLSFSNAYAGYTVCAPSRATLFTGRNSGHL------AGAPAGWPLLPRLLQDAGYETAAFGKsapMDVVDPgvpDlqwglpTTHGFDHFLGQPNQAFCHNMYPEYITVDKTALWLH-LNAKHRSRIACMANPAayNYTTDV-FTDAAISWLQSRSKNCSPFFAYLSYTVPHA 193
                 788888888888777.9*************************************976654......6779999***************99987778888652223422222469****99999988899999************98.555566666666665500555555.66666678889*****************95 PP

  == domain 2    score: 56.6 bits;  conditional E-value: 1.1e-19
   TIGR03417 253 rayfaaisyvddkiGellevleetrladdtivvfvsdhG.........dmlGerGlw..ykmsffegsarvPllvaaperleagrve.aavstvdllPtlvelagveleevlpaldGeslvpllkgkerkdevlgeylaegs....iaPlv................alrrGkykfvk.........ceadPeqlydleadPkelenlae 421
                 r + aai y+d++iG++l++l++ +la  t v f+sd G         d +G r     +k s++eg+ r P +v  p+  ++g v+  + +  d+lPt+ e+a++ l ++++ +dG+s vp+l+g+++  +  + ++   s     aPl+                a r Gk+k v+         ++ d   lydle+dP e++++a+
  MMETSP1137-20121227|1847_1 225 RDHAAAIGYLDARIGDVLAMLDSLQLATSTAVFFASDNGphnegghsvDFFGSRRWLrgFKRSYYEGGVRSPSIVRWPGITTPGAVSkVPWAFWDVLPTMLEMAQIPLPTNAE-IDGRSXVPTLRGASQPPPRYMYWTWRPSraddFAPLLnatpklansqseaagyAARVGKWKAVVqscahgeapSQLDWMELYDLEEDPGEKTDIAN 433
                 567799*******************************87666666767889988632469*******************999998761688999**************99998.**********99988877777665443311113444322222222222222225788999976423222222234566678999999999999887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (458 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        38  (0.00926377); expected 82.0 (0.02)
Passed bias filter:                       38  (0.00926377); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.32u 0.14s 00:00:00.46 Elapsed: 00:00:00.46
# Mc/sec: 1314.15
//
Query:       MMETSP1137-20121227|1848_1  [L=397]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   5.1e-127  422.6   2.6   3.2e-106  353.8   0.4    2.0  2  TIGR02188 Ac_CoA_lig_AcsA: acetate--CoA ligase
    1.5e-56  190.1   2.4    1.5e-47  160.4   0.4    2.0  2  TIGR02316 propion_prpE: propionate--CoA ligase
    9.9e-23   78.4   0.2    2.3e-19   67.3   0.1    2.0  2  TIGR02262 benz_CoA_lig: benzoate-CoA ligase family
    2.2e-22   76.8   1.0    1.9e-19   67.1   0.1    2.0  2  TIGR01217 ac_ac_CoA_syn: acetoacetate-CoA ligase
    1.9e-16   57.7   0.0    2.5e-16   57.3   0.0    1.1  1  TIGR01733 AA-adenyl-dom: amino acid adenylation domain
      3e-13   46.7   0.2    5.5e-12   42.5   0.0    2.3  3  TIGR02275 DHB_AMP_lig: (2,3-dihydroxybenzoyl)adenylate synthase
    1.4e-12   44.6   0.2    8.8e-11   38.8   0.0    2.1  2  TIGR03098 ligase_PEP_1: acyl-CoA ligase (AMP-forming), exosortase A-associated
    6.5e-12   42.4   0.3    1.4e-11   41.3   0.1    1.5  2  TIGR03205 pimA: dicarboxylate--CoA ligase PimA
    1.7e-10   38.1   0.6    8.8e-10   35.7   0.1    1.9  2  TIGR03208 cyc_hxne_CoA_lg: cyclohexanecarboxylate-CoA ligase
    2.6e-06   24.1   0.0      4e-06   23.5   0.0    1.3  1  TIGR01734 D-ala-DACP-lig: D-alanine--poly(phosphoribitol) ligase, subunit 1
    1.9e-05   21.5   0.0    5.7e-05   19.9   0.0    1.6  2  TIGR01923 menE: O-succinylbenzoate-CoA ligase
    0.00075   14.7   0.1      0.001   14.3   0.0    1.1  1  TIGR03443 alpha_am_amid: L-aminoadipate-semialdehyde dehydrogenase
    0.00075   16.1   0.1     0.0019   14.7   0.1    1.7  1  TIGR02372 4_coum_CoA_lig: 4-coumarate--CoA ligase


Domain annotation for each model (and alignments):
>> TIGR02188  Ac_CoA_lig_AcsA: acetate--CoA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  353.8   0.4    1e-108  3.2e-106     309     542 ..       2     229 ..       1     231 [. 0.96
   2 !   70.2   0.0   7.5e-23   2.4e-20     566     628 ..     229     292 ..     227     293 .. 0.95

  Alignments for each domain:
  == domain 1    score: 353.8 bits;  conditional E-value: 1e-108
   TIGR02188 309 ttllfegvptypdasrfweviekykvtifYtaPtaiRalmklgeelvkkhdlsslrvlgsvGepinpeaweWyyevvGkekcpivdtwWqtetGgilitplpgvatelkpgsatlPlfGieaevvd.eegkeveeeeeggvLvikkpwPsmlrtiygdeerfvetYfkklkglyftGDgarrdkdGyiwilGRvDdvinvsGhrlgtaeiesalvsheavaeaavvgvpdeikge 542
                 tt++fe+ ptypda+           ++fYtaPtaiRalmk g e v+k+d+sslrvlg+vGepinpeaw+Wy+e+vG+++c +vdt+WqtetGg++i++lpg +t++k+g+a+lP++G++++vvd ++g ++  ++ +gvL+i +pwP+++rti+g++er+ ++Y+k + g yftGDg+rrd+dGyiwi+GRvDdv+nvsGhrlgtaeiesalv+he+  eaavvgvp+++k +
  MMETSP1137-20121227|1848_1   2 TTVMFESLPTYPDAAGTG------TWSTFYTAPTAIRALMKFGVEPVHKYDRSSLRVLGTVGEPINPEAWKWYFEEVGEKRCVVVDTFWQTETGGHMISNLPG-VTPMKAGAASLPMMGVRPVVVDpQSGATLAGNDVEGVLCIGQPWPGIARTIWGNHERYLNAYLKPYAGKYFTGDGCRRDQDGYIWITGRVDDVLNVSGHRLGTAEIESALVKHESCVEAAVVGVPHDVKXN 229
                 89***********98765......4589***************************************************************************.5*********************99999999666669********************************************************************************************976 PP

  == domain 2    score: 70.2 bits;  conditional E-value: 7.5e-23
   TIGR02188 566 kklvrkeigpiakpdkilvveelPktRsGkimRRllrkiaege.ellgdvstledpsvveelke 628
                 +++vr+eig +a pd+i v++ lPktRsGkimRR+lrkia+ e ++lgdvstl+dps+v+ l++
  MMETSP1137-20121227|1848_1 229 NQAVRSEIGGLAMPDTIVVTPGLPKTRSGKIMRRVLRKIATFEsDTLGDVSTLADPSIVQVLID 292
                 589**************************************9999**************99876 PP

>> TIGR02316  propion_prpE: propionate--CoA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  160.4   0.4   4.7e-50   1.5e-47     302     537 ..       2     231 ..       1     233 [. 0.92
   2 !   31.4   0.0   5.4e-11   1.7e-08     563     620 ..     229     288 ..     225     294 .. 0.89

  Alignments for each domain:
  == domain 1    score: 160.4 bits;  conditional E-value: 4.7e-50
   TIGR02316 302 atvlyeglptrpdggvwwsivekyrvsvmfsaptairvlkkqdaallrkhdlsslevlflagepldeptarwisdalgk...pvidnywqtetgwpvlaiarglddkpvklgspglpvygyrldvldeatgedvgpne.kgllvvaaplppgclstvwgddarflktyfsafkrllyssldwgirdedgytfilgrtddvinvaghrlgtreieesvsshaavaevavvgvkdelkgqva 537
                 +tv++e lpt pd++           s++++aptair l k+    ++k+d ssl+vl   gep++  + +w  + +g     v+d +wqtetg  +++  +g+   p+k g+  lp++g r  v+d  +g   + n+  g+l++  p  pg  +t+wg+  r+l++y   +    y + d + rd+dgy+ i gr ddv+nv+ghrlgt eie ++  h +  e+avvgv  ++k + a
  MMETSP1137-20121227|1848_1   2 TTVMFESLPTYPDAAGT------GTWSTFYTAPTAIRALMKFGVEPVHKYDRSSLRVLGTVGEPINPEAWKWYFEEVGEkrcVVVDTFWQTETGGHMISNLPGVT--PMKAGAASLPMMGVRPVVVDPQSGATLAGNDvEGVLCIGQPW-PGIARTIWGNHERYLNAYLKPYAGK-YFTGDGCRRDQDGYIWITGRVDDVLNVSGHRLGTAEIESALVKHESCVEAAVVGVPHDVKXNQA 231
                 79***********9754......445789*************************************9999****99986333599******************96..7899********************999877648*******97.69******************99865.7788***************************************************999997766 PP

  == domain 2    score: 31.4 bits;  conditional E-value: 5.4e-11
   TIGR02316 563 malvesqlgavarparvyvvaalpktrsgkllrraiqava..egrdpgdlttiddpaale 620
                  ++v s++g +a p  + v   lpktrsgk++rr ++ +a  e+   gd++t+ dp+ ++
  MMETSP1137-20121227|1848_1 229 NQAVRSEIGGLAMPDTIVVTPGLPKTRSGKIMRRVLRKIAtfESDTLGDVSTLADPSIVQ 288
                 57899*******************************98875589999*********8764 PP

>> TIGR02262  benz_CoA_lig: benzoate-CoA ligase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.3   0.1   7.4e-22   2.3e-19     254     441 ..      22     223 ..       3     229 .. 0.84
   2 !    9.5   0.0   0.00024     0.075     471     507 ..     230     266 ..     224     267 .. 0.91

  Alignments for each domain:
  == domain 1    score: 67.3 bits;  conditional E-value: 7.4e-22
   TIGR02262 254 tifygvptlyaamla..dpelkaedekrlrlctsaGealpeevGkrwkarfGvd...ildGvGstellhiflsnlpdd..vkyGtsGkpvpGyrlrlvd.dggedva.dgevGellvsgp..ssaagywnnreksratfeGewtr...sGdkyvrnddGsytyaGrtddllkvsGiyvspfevesaliaheavleaavvgae 441
                 + fy++pt   a++    + +++ d+++lr+  + Ge++  e  k + +  G     ++d    te +  ++snlp+   +k G++  p+ G r  +vd ++g + a +++ G l +  p    a + w+n+e+  +++  +++    +Gd   r++dG+   +Gr dd+l vsG  +   e+esal++he+ +eaavvg+ 
  MMETSP1137-20121227|1848_1  22 STFYTAPTAIRALMKfgVEPVHKYDRSSLRVLGTVGEPINPEAWKWYFEEVGEKrcvVVDTFWQTETGGHMISNLPGVtpMKAGAASLPMMGVRPVVVDpQSGATLAgNDVEGVLCIGQPwpGIARTIWGNHERYLNAYLKPYAGkyfTGDGCRRDQDGYIWITGRVDDVLNVSGHRLGTAEIESALVKHESCVEAAVVGVP 223
                 679******999876224566777799************99999999999997544499*********99******8533899***********999996444444426778999998862267899*******999988777532349**************************************************974 PP

  == domain 2    score: 9.5 bits;  conditional E-value: 0.00024
   TIGR02262 471 ehvkdklapykyprwievvddlpktatGkiqrfklre 507
                 + v+++++    p  i v   lpkt +Gki r  lr+
  MMETSP1137-20121227|1848_1 230 QAVRSEIGGLAMPDTIVVTPGLPKTRSGKIMRRVLRK 266
                 67999***************************99996 PP

>> TIGR01217  ac_ac_CoA_syn: acetoacetate-CoA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.1   0.1   6.1e-22   1.9e-19     358     555 ..      22     222 ..       7     229 .. 0.83
   2 !    8.7   0.0   0.00028     0.088     585     624 ..     229     268 ..     224     292 .. 0.80

  Alignments for each domain:
  == domain 1    score: 67.1 bits;  conditional E-value: 6.1e-22
   TIGR01217 358 tvlGtsakyvsavrkkglkparthdlsalrlvastGsplkpegfeyvyeeika..dvllas...isGGtdivscfvganpslpvykGeiqapglGlaveawd.eeGkpvtge..kGelvvtkplpsmpvrfwndedGskyrkayfdkypgvwahGdyieltprGgivihGrsdatlnpnGvrlGsaeiynaverldeveeslvigq 555
                 + + t+   + a+ k g++p++++d s+lr++ + G p++pe++++ +ee+     v++ +      G  ++s + g   + p+  G    p +G+   + d ++G ++ g+  +G l + +p p    + w +    +y +ay++ y g +  Gd ++    G i i Gr d  ln +G rlG+aei  a+ + +   e+ v+g 
  MMETSP1137-20121227|1848_1  22 STFYTAPTAIRALMKFGVEPVHKYDRSSLRVLGTVGEPINPEAWKWYFEEVGEkrCVVVDTfwqTETGGHMISNLPG---VTPMKAGAASLPMMGVRPVVVDpQSGATLAGNdvEGVLCIGQPWPGIARTIWGNH--ERYLNAYLKPYAGKYFTGDGCRRDQDGYIWITGRVDDVLNVSGHRLGTAEIESALVKHESCVEAAVVGV 222
                 5677888999***************************************9977543333321113344456666555...468889*********986666626899*9876225778899***********865..69***************************************************9999999999999886 PP

  == domain 2    score: 8.7 bits;  conditional E-value: 0.00028
   TIGR01217 585 kdairaglsprhvpskiievagiprtlsGkkvevavkdvv 624
                 ++a+r+++    +p+ i+ ++g+p+t sGk++   ++++ 
  MMETSP1137-20121227|1848_1 229 NQAVRSEIGGLAMPDTIVVTPGLPKTRSGKIMRRVLRKIA 268
                 5789***************************988888764 PP

>> TIGR01733  AA-adenyl-dom: amino acid adenylation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.3   0.0   7.8e-19   2.5e-16     219     409 .]      27     219 ..      12     220 .. 0.82

  Alignments for each domain:
  == domain 1    score: 57.3 bits;  conditional E-value: 7.8e-19
   TIGR01733 219 tpsllellaeea....see.lkslrlvllgGealtaelverlrarae..evrlinlYGpTEttvvvtveevsadeeseeepvpiGrplanvrlyvldea..lrpvpvgvvGELyigG..agvarGYlnrpeltaerFvedpfaksegerlYrTGDlvrlradGeleflGRaDdqvKirGfRielgEieaalaelpgveeavv 409
                  p+ +++l++      ++  ++slr++ ++Ge +++e+ + + ++++  ++ ++ ++  TEt  ++  +  +     +  +     p+ +vr +v+d++   +++ + v G L+ig   +g+ar  +++ e+  + +++ p+a++     Y TGD +r+++dG + + GR+Dd + ++G+R+  +Eie+al ++++  ea+v
  MMETSP1137-20121227|1848_1  27 APTAIRALMKFGvepvHKYdRSSLRVLGTVGEPINPEAWKWYFEEVGekRCVVVDTFWQTETGGHMISNL-PGVTPMK--AGAASLPMMGVRPVVVDPQsgATLAGNDVEGVLCIGQpwPGIARTIWGNHERYLNAYLK-PYAGK-----YFTGDGCRRDQDGYIWITGRVDDVLNVSGHRLGTAEIESALVKHESCVEAAV 219
                 55555555554444433444569*****************98888776788899********99886554.4443333..456889*************9889999*********984469*******99999999987.67775.....******************************************9998877776 PP

>> TIGR02275  DHB_AMP_lig: (2,3-dihydroxybenzoyl)adenylate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   0.0       1.9     6e+02      90     102 ..      31      43 ..      28      58 .. 0.81
   2 !   42.5   0.0   1.7e-14   5.5e-12     400     466 ..     159     225 ..     107     232 .. 0.80
   3 ?    1.7   0.0     0.042        13     500     526 .]     239     265 ..     232     265 .. 0.89

  Alignments for each domain:
  == domain 1    score: -3.8 bits;  conditional E-value: 1.9
   TIGR02275  90 ffallklGvaPvl 102
                 + al+k Gv Pv 
  MMETSP1137-20121227|1848_1  31 IRALMKFGVEPVH 43 
                 5699999999996 PP

  == domain 2    score: 42.5 bits;  conditional E-value: 1.7e-14
   TIGR02275 400 akafdaeGfyitGdlvkltkeGyivveGrakdqinrGGekiaaeeienlllkhpavidaalvslede 466
                 a      G y+tGd  +++++Gyi ++Gr+ d +n  G ++ + eie+ l+kh++ ++aa+v ++ +
  MMETSP1137-20121227|1848_1 159 AYLKPYAGKYFTGDGCRRDQDGYIWITGRVDDVLNVSGHRLGTAEIESALVKHESCVEAAVVGVPHD 225
                 444445799*****************************************************99866 PP

  == domain 3    score: 1.7 bits;  conditional E-value: 0.042
   TIGR02275 500 yklPdrvelidslPltavGkidkkalr 526
                   +Pd + +   lP+t  Gki ++ lr
  MMETSP1137-20121227|1848_1 239 LAMPDTIVVTPGLPKTRSGKIMRRVLR 265
                 569*******************99998 PP

>> TIGR03098  ligase_PEP_1: acyl-CoA ligase (AMP-forming), exosortase A-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.8   0.0   2.8e-13   8.8e-11     399     456 ..     169     226 ..     158     234 .. 0.92
   2 !    4.8   0.0    0.0055       1.7     480     516 ..     230     266 ..     225     267 .. 0.90

  Alignments for each domain:
  == domain 1    score: 38.8 bits;  conditional E-value: 2.8e-13
   TIGR03098 399 fsGDlvrrDeeGflyfvgRrdemiktsGyRvsPteveevllatglvaeavvlgvpdpe 456
                 f GD  rrD++G++++ gR d+++  sG+R    e+e++l++ +   ea+v+gvp++ 
  MMETSP1137-20121227|1848_1 169 FTGDGCRRDQDGYIWITGRVDDVLNVSGHRLGTAEIESALVKHESCVEAAVVGVPHDV 226
                 89****************************************************9875 PP

  == domain 2    score: 4.8 bits;  conditional E-value: 0.0055
   TIGR03098 480 kelraelPaymvPakielrealprnanGkiDrkalaa 516
                 +++r e+    +P +i ++  lp++ +Gki r++l++
  MMETSP1137-20121227|1848_1 230 QAVRSEIGGLAMPDTIVVTPGLPKTRSGKIMRRVLRK 266
                 67889999999*********************99975 PP

>> TIGR03205  pimA: dicarboxylate--CoA ligase PimA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.3   0.1   4.5e-14   1.4e-11     304     485 ..      40     230 ..      20     239 .. 0.79
   2 ?   -1.4   0.0       0.4   1.3e+02     509     541 .]     233     265 ..     229     265 .. 0.87

  Alignments for each domain:
  == domain 1    score: 41.3 bits;  conditional E-value: 4.5e-14
   TIGR03205 304 pslekrdlsslatigsggaplpvevaklferkvglk...lksgwgmtetcspgtg.hplegpdkpgsiglmlpgieldvvslddpkkvlppgev.gelrirg..pnvtrgywnraeesaeafvg...drfltgdigyvdrdgyfflvdrkkdmiisggfnvypqmieqaiyelpavqevivigipdqyrgea 485
                   ++k d ssl ++g+ g p+  e  k +   vg k   +   +  tet     +  p   p k g+  l + g+   vv  +    +l   +v g l i    p ++r  w + e   +a+++   ++++tgd    d+dgy+++  r  d++   g  +    ie a+ ++ +  e  v+g+p + + + 
  MMETSP1137-20121227|1848_1  40 EPVHKYDRSSLRVLGTVGEPINPEAWKWYFEEVGEKrcvVVDTFWQTETGGHMISnLPGVTPMKAGAASLPMMGVRPVVVDPQS-GATLAGNDVeGVLCIGQpwPGIARTIWGNHERYLNAYLKpyaGKYFTGDGCRRDQDGYIWITGRVDDVLNVSGHRLGTAEIESALVKHESCVEAAVVGVPHDVKXNQ 230
                 347899***************9999997766666552333445667888877665168899********999999876665544.456666666255666544478***************98544489********************************************************9988665 PP

  == domain 2    score: -1.4 bits;  conditional E-value: 0.4
   TIGR03205 509 agklgkhelpvavelvdelprtsvgklsrhelr 541
                 +  +g   +p ++ +   lp+t  gk+ r  lr
  MMETSP1137-20121227|1848_1 233 RSEIGGLAMPDTIVVTPGLPKTRSGKIMRRVLR 265
                 567888899999999*************99887 PP

>> TIGR03208  cyc_hxne_CoA_lg: cyclohexanecarboxylate-CoA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.7   0.1   2.8e-12   8.8e-10     310     476 ..      48     225 ..      20     233 .. 0.77
   2 ?    0.5   0.0      0.14        43     513     537 ..     241     265 ..     231     266 .. 0.87

  Alignments for each domain:
  == domain 1    score: 35.7 bits;  conditional E-value: 2.8e-12
   TIGR03208 310 sslktflcagapipgalverarealgak...ivsawgmtengavtvtkpddaeekasvtdglplpgvevkvidad.gaklsagevgrllvra......asnfggylkrphlna..vdaegwfdtgdlafldaegyiriagrskdviirggenipvveieallykhpavaqvaivaypde 476
                 ssl+ +   g pi +   +   e +g k   +v ++  te+g   + ++       + +  lp+ gv   v+d + ga+l+ ++v  +l  +      a  + g   r  lna      g + tgd    d +gyi i+gr  dv+   g  +   eie+ l kh +  + a+v+ p +
  MMETSP1137-20121227|1848_1  48 SSLRVLGTVGEPINPEAWKWYFEEVGEKrcvVVDTFWQTETGGHMISNLPGVTPMKAGAASLPMMGVRPVVVDPQsGATLAGNDVEGVLCIGqpwpgiARTIWGNHER-YLNAylKPYAGKYFTGDGCRRDQDGYIWITGRVDDVLNVSGHRLGTAEIESALVKHESCVEAAVVGVPHD 225
                 6888888899999999999888888865333677888899999888887777777777789************86478999999865554431222222333344443.45552134679999****************************************************9975 PP

  == domain 2    score: 0.5 bits;  conditional E-value: 0.14
   TIGR03208 513 iperlvvrdalpatpagkiqkfrlr 537
                 +p+ +vv+  lp+t +gki +  lr
  MMETSP1137-20121227|1848_1 241 MPDTIVVTPGLPKTRSGKIMRRVLR 265
                 7999***************987776 PP

>> TIGR01734  D-ala-DACP-lig: D-alanine--poly(phosphoribitol) ligase, subunit 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.5   0.0   1.3e-08     4e-06     322     432 ..     114     225 ..      78     244 .. 0.76

  Alignments for each domain:
  == domain 1    score: 23.5 bits;  conditional E-value: 1.3e-08
   TIGR01734 322 akpdvnlfivdee.GeklsegekGeivivGd...svskGylnnpekteeaffeaegkrayrtGDagtieddgllfyqGrlDfqiklnGyrieLedieanlkkskyikeavv..vPky 432
                  +p     +vd + G++l+  +   ++ +G+    +++    n e+  +a+ +      y tGD    ++dg++ + Gr+D  + + G+r+   +ie+ l k +   ea+v  vP+ 
  MMETSP1137-20121227|1848_1 114 VRP----VVVDPQsGATLAGNDVEGVLCIGQpwpGIARTIWGNHERYLNAYLKPY-AGKYFTGDGCRRDQDGYIWITGRVDDVLNVSGHRLGTAEIESALVKHESCVEAAVvgVPHD 225
                 444....677766588888777666666774233799999999999999998765.4569*************************************99877766555555044543 PP

>> TIGR01923  menE: O-succinylbenzoate-CoA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.0   1.8e-07   5.7e-05     326     384 ..     166     224 ..     154     232 .. 0.91
   2 ?   -1.1   0.0      0.46   1.4e+02     408     440 ..     230     262 ..     223     264 .. 0.83

  Alignments for each domain:
  == domain 1    score: 19.9 bits;  conditional E-value: 1.8e-07
   TIGR01923 326 GwlktgDlgeldgegfllvldRrddliISGGENiypeeiEkvlkslpevqeavvvpkeD 384
                 G + tgD  + d++g++ +++R dd++   G  +  +eiE++l ++    ea+vv+++ 
  MMETSP1137-20121227|1848_1 166 GKYFTGDGCRRDQDGYIWITGRVDDVLNVSGHRLGTAEIESALVKHESCVEAAVVGVPH 224
                 55679**********************999************************99875 PP

  == domain 2    score: -1.1 bits;  conditional E-value: 0.46
   TIGR01923 408 aylkeklaKyKvPiafekldelpkeasgKilRn 440
                 + ++++++ + +P ++++ + lpk+ sgKi R+
  MMETSP1137-20121227|1848_1 230 QAVRSEIGGLAMPDTIVVTPGLPKTRSGKIMRR 262
                 556777888899*******************97 PP

>> TIGR03443  alpha_am_amid: L-aminoadipate-semialdehyde dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.0   3.2e-06     0.001     666     728 ..     154     216 ..     145     236 .. 0.84

  Alignments for each domain:
  == domain 1    score: 14.3 bits;  conditional E-value: 3.2e-06
   TIGR03443 666 kawrefwlgprdrlyrtGdlGrylPdGnvecsGraddqvkirGfrielGeidthlsrhPlvre 728
                 + + + +l+p    y tGd  r   dG +  +Gr dd + + G r+   ei+  l +h    e
  MMETSP1137-20121227|1848_1 154 ERYLNAYLKPYAGKYFTGDGCRRDQDGYIWITGRVDDVLNVSGHRLGTAEIESALVKHESCVE 216
                 45667789999999*******************************************976554 PP

>> TIGR02372  4_coum_CoA_lig: 4-coumarate--CoA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.1   6.2e-06    0.0019     283     328 ..     174     219 ..     165     260 .. 0.90

  Alignments for each domain:
  == domain 1    score: 14.7 bits;  conditional E-value: 6.2e-06
   TIGR02372 283 lrWddervfvieGrldeilqvgGvnvspghvkdvLeaepavealav 328
                  r d+++   i+Gr+d++l v+G     +++++ L ++++  ++av
  MMETSP1137-20121227|1848_1 174 CRRDQDGYIWITGRVDDVLNVSGHRLGTAEIESALVKHESCVEAAV 219
                 5678899999***************************998777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (397 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        99  (0.0241346); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                        19  (0.00463189); expected 4.1 (0.001)
Passed Fwd filter:                        13  (0.00316919); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.59u 0.11s 00:00:00.70 Elapsed: 00:00:00.71
# Mc/sec: 738.02
//
Query:       MMETSP1137-20121227|1849_1  [L=292]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (292 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        84  (0.0204778); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.14s 00:00:00.38 Elapsed: 00:00:00.40
# Mc/sec: 963.52
//
Query:       MMETSP1137-20121227|1850_1  [L=285]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (285 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        56  (0.0136519); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.13s 00:00:00.36 Elapsed: 00:00:00.37
# Mc/sec: 1016.67
//
Query:       MMETSP1137-20121227|1851_1  [L=579]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (579 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       108  (0.0263286); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.17s 00:00:00.54 Elapsed: 00:00:00.42
# Mc/sec: 1819.56
//
Query:       MMETSP1137-20121227|1852_1  [L=77]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (77 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        87  (0.0212092); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.12s 00:00:00.25 Elapsed: 00:00:00.26
# Mc/sec: 390.89
//
Query:       MMETSP1137-20121227|1853_1  [L=533]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (533 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       134  (0.032667); expected 82.0 (0.02)
Passed bias filter:                      103  (0.0251097); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.15s 00:00:00.51 Elapsed: 00:00:00.44
# Mc/sec: 1598.87
//
Query:       MMETSP1137-20121227|1854_1  [L=95]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (95 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        77  (0.0187713); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.18s 00:00:00.32 Elapsed: 00:00:00.30
# Mc/sec: 417.97
//
Query:       MMETSP1137-20121227|1855_1  [L=175]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (175 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        63  (0.0153584); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.13s 00:00:00.29 Elapsed: 00:00:00.35
# Mc/sec: 659.95
//
Query:       MMETSP1137-20121227|1856_1  [L=274]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (274 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        69  (0.0168211); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.12s 00:00:00.35 Elapsed: 00:00:00.35
# Mc/sec: 1033.29
//
Query:       MMETSP1137-20121227|1857_1  [L=162]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0028   14.5   1.8     0.0031   14.4   1.2    1.1  1  TIGR03858 LLM_2I7G: probable oxidoreductase, LLM family
  ------ inclusion threshold ------
      0.014   13.3   0.1      0.014   13.3   0.1    2.0  2  TIGR02588 TIGR02588: TIGR02588 family protein
      0.019   11.9   0.3      0.022   11.7   0.2    1.1  1  TIGR03427 ABC_peri_uca: ABC transporter periplasmic binding protein, urea carboxylase region


Domain annotation for each model (and alignments):
>> TIGR03858  LLM_2I7G: probable oxidoreductase, LLM family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   1.2   2.3e-06    0.0031     162     273 ..       3     118 ..       1     158 [. 0.68

  Alignments for each domain:
  == domain 1    score: 14.4 bits;  conditional E-value: 2.3e-06
   TIGR03858 162 vyPraeqeklpiwvavGGspesvvraaklglplvlaiiggepkrFkplv...elyreaaeeaghekeelkvgvhslgfvaetdeeaa.eeffpsykevvdkigreR.gWapltreqf 273
                 v Pr ++ + ++++ vGGs +s  raa+ +l l+ a  +++ +r  +++     y+++a+   +++ + +  v+ + +  ++++ea+ ++++ + ++++++  ++R ++++++ ++ 
  MMETSP1137-20121227|1857_1   3 VSPRRRHADAQAFI-VGGSADSQQRAAERRLELIAARKTSHEERVLKYAvdnTTYKQVAALEIRAALDSQQKVRNVMHSQQKQDEAMrDRMVINSERQREQTLQSRqHFRQAQAREV 118
                 77999999999988.9***********************999998887533357999887666665566666666666666666664155666666666555555536666654443 PP

>> TIGR02588  TIGR02588: TIGR02588 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.1     1e-05     0.014      51      83 ..      45      77 ..      21      85 .. 0.77
   2 ?    1.6   0.9     0.041        55      36      86 ..      91     140 ..      77     151 .. 0.77

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 1e-05
   TIGR02588 51 yyveFaienrggktaeavevkaeLrsaeevvee 83
                 ++++a++n++ k ++a e++a L s+++v+++
  MMETSP1137-20121227|1857_1 45 RVLKYAVDNTTYKQVAALEIRAALDSQQKVRNV 77
                489*************************99876 PP

  == domain 2    score: 1.6 bits;  conditional E-value: 0.041
   TIGR02588  36 lvvakaevvreadGqyyveFaienrggktaeavevkaeLrsaeevveeaev 86 
                  +v+++e +re++ q + +F  + ++ + aea +  ae+++a++ + +a  
  MMETSP1137-20121227|1857_1  91 RMVINSERQREQTLQSRQHFR-QAQAREVAEANRRMAEMKKAGAMQQKASE 140
                 456777778888888888886.6789999999999*******999887654 PP

>> TIGR03427  ABC_peri_uca: ABC transporter periplasmic binding protein, urea carboxylase region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.2   1.6e-05     0.022     166     246 ..      67     156 ..      26     160 .. 0.81

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 1.6e-05
   TIGR03427 166 eikaakgakkvfdssqiPGeil.dllvvnt.....etlkanpklgkalaGaWyev...lalmkaedaegkaaleamakasgtdlagyeaq 246
                 ++ +++ +++v++s q   e + d +v+n      +tl+  +++ +a a    e    +a mk+ +a  ++a e+ a  s+t+ ++++ +
  MMETSP1137-20121227|1857_1  67 ALDSQQKVRNVMHSQQKQDEAMrDRMVINSerqreQTLQSRQHFRQAQAREVAEAnrrMAEMKKAGAMQQKASEQQAARSQTEANAFNDR 156
                 56788899999999999999776999998733333589999****99988777644449*************************999865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (162 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       633  (0.154315); expected 82.0 (0.02)
Passed bias filter:                      148  (0.03608); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.23u 0.15s 00:00:00.38 Elapsed: 00:00:00.32
# Mc/sec: 668.19
//
Query:       MMETSP1137-20121227|1858_1  [L=180]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (180 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        51  (0.012433); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.15s 00:00:00.32 Elapsed: 00:00:00.31
# Mc/sec: 766.39
//
Query:       MMETSP1137-20121227|1860_1  [L=676]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.7e-12   43.8   0.0      0.018   12.6   0.0    5.5  5  TIGR03665 arCOG04150: arCOG04150 universal archaeal KH domain protein
    4.3e-09   33.2   0.0       0.33    7.1   0.0    5.0  5  TIGR03591 polynuc_phos: polyribonucleotide nucleotidyltransferase
    9.8e-07   25.3   0.4      0.045    9.9   0.0    4.5  5  TIGR02696 pppGpp_PNP: guanosine pentaphosphate synthetase I/polyribonucleotide nucleotidyltransferase
      3e-06   25.4   0.1        3.8    5.7   0.0    4.5  5  TIGR01952 nusA_arch: NusA family KH domain protein, archaeal


Domain annotation for each model (and alignments):
>> TIGR03665  arCOG04150: arCOG04150 universal archaeal KH domain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.6   0.0   1.8e-05     0.018      99     153 ..      20      85 ..      14      87 .. 0.84
   2 !    4.9   0.0    0.0042       4.3       8     127 ..     181     209 ..     174     244 .. 0.70
   3 !    6.2   0.0    0.0016       1.7     100     129 ..     318     347 ..     311     354 .. 0.83
   4 !    3.8   0.0     0.009       9.3       4      33 ..     429     458 ..     426     465 .. 0.67
   5 !    8.4   0.0   0.00035      0.36     101     129 ..     586     614 ..     577     654 .. 0.87

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 1.8e-05
   TIGR03665  99 ikgriIGeeGktrkiieeltgvkisvyg...........ktvsiiGeieqvkiareAiemlieGkk 153
                 + gr+IG +G +r+ i + t+++i + +           + v iiG ++qv+ a + +  + +G++
  MMETSP1137-20121227|1860_1  20 MLGRLIGPGGSVRTGIMQRTQTDIFIFDdqpppgrapneRLVVIIGIYHQVEQAATEVLAIASGQT 85 
                 67************************98555555555445699********999999999999985 PP

  == domain 2    score: 4.9 bits;  conditional E-value: 0.0042
   TIGR03665   8 rigvliGkkgevkkeieektkvkleidseegevkveeeeedplkvlkarevvkAigrGfspekAlkLldddkvLevidlkelaksknelkrikgriIGeeGktrkiieeltgvkisvygk 127
                 ++                                                                                           g++IG++G t + ++  tg  i v +k
  MMETSP1137-20121227|1860_1 181 QL-------------------------------------------------------------------------------------------GKLIGSKGSTLNELQAKTGCGIFVVDK 209
                 44...........................................................................................566666666666666666666666554 PP

  == domain 3    score: 6.2 bits;  conditional E-value: 0.0016
   TIGR03665 100 kgriIGeeGktrkiieeltgvkisvygktv 129
                  g++IG +G t + ++  tg ++ v +k v
  MMETSP1137-20121227|1860_1 318 LGKLIGAKGNTLNELQTRTGCNVFVVDKDV 347
                 488899999999999999999998888876 PP

  == domain 4    score: 3.8 bits;  conditional E-value: 0.009
   TIGR03665   4 ipkdrigvliGkkgevkkeieektkvklei 33 
                 i+k+ +g liG +g+ ++e+ ++ ++++ i
  MMETSP1137-20121227|1860_1 429 IEKASVGKLIGPQGSKRRELTQRSGCEMYI 458
                 666667777777777777777777666654 PP

  == domain 5    score: 8.4 bits;  conditional E-value: 0.00035
   TIGR03665 101 griIGeeGktrkiieeltgvkisvygktv 129
                 g++IG++G t k ++  tg  i v +k+v
  MMETSP1137-20121227|1860_1 586 GKVIGSGGNTLKEMQAKTGCGIFVVDKEV 614
                 99************************987 PP

>> TIGR03591  polynuc_phos: polyribonucleotide nucleotidyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.6   0.0    0.0018       1.9     554     589 ..      13      48 ..       6      59 .. 0.91
   2 !    4.8   0.0    0.0016       1.7     554     588 ..     174     208 ..     163     211 .. 0.88
   3 !    4.4   0.0    0.0021       2.1     554     588 ..     310     344 ..     296     347 .. 0.87
   4 !    4.8   0.0    0.0016       1.6     555     589 ..     427     461 ..     417     467 .. 0.93
   5 !    7.1   0.0   0.00032      0.33     556     588 ..     579     611 ..     564     618 .. 0.85

  Alignments for each domain:
  == domain 1    score: 4.6 bits;  conditional E-value: 0.0018
   TIGR03591 554 tikinkdkireviGkgGkvireiieetgakidiedd 589
                  + ++k  ++++iG+gG+v   i+++t++ i i dd
  MMETSP1137-20121227|1860_1  13 DMLVDKTMLGRLIGPGGSVRTGIMQRTQTDIFIFDD 48 
                 57899999***********************99887 PP

  == domain 2    score: 4.8 bits;  conditional E-value: 0.0016
   TIGR03591 554 tikinkdkireviGkgGkvireiieetgakidied 588
                  + +++++++++iG++G++++e++ +tg+ i + d
  MMETSP1137-20121227|1860_1 174 DMLVDRSQLGKLIGSKGSTLNELQAKTGCGIFVVD 208
                 5789999**********************998876 PP

  == domain 3    score: 4.4 bits;  conditional E-value: 0.0021
   TIGR03591 554 tikinkdkireviGkgGkvireiieetgakidied 588
                 +i ++k  ++++iG +G++++e++ +tg+++ + d
  MMETSP1137-20121227|1860_1 310 EILVDKASLGKLIGAKGNTLNELQTRTGCNVFVVD 344
                 567889999*********************98877 PP

  == domain 4    score: 4.8 bits;  conditional E-value: 0.0016
   TIGR03591 555 ikinkdkireviGkgGkvireiieetgakidiedd 589
                 + i+k  ++++iG+ G++ re+++++g+++ i dd
  MMETSP1137-20121227|1860_1 427 LLIEKASVGKLIGPQGSKRRELTQRSGCEMYIVDD 461
                 679999*************************9997 PP

  == domain 5    score: 7.1 bits;  conditional E-value: 0.00032
   TIGR03591 556 kinkdkireviGkgGkvireiieetgakidied 588
                  ++k  +++viG+gG++++e++ +tg+ i + d
  MMETSP1137-20121227|1860_1 579 LLDKADLGKVIGSGGNTLKEMQAKTGCGIFVVD 611
                 56788899*******************998877 PP

>> TIGR02696  pppGpp_PNP: guanosine pentaphosphate synthetase I/polyribonucleotide nucleotidyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.0      0.03        30     586     617 ..      15      48 ..       4      50 .. 0.83
   2 !    6.4   0.0   0.00051      0.52     580     615 ..     170     207 ..     160     210 .. 0.76
   3 !    9.9   0.0   4.3e-05     0.045     575     616 ..     301     344 ..     292     347 .. 0.84
   4 ?    0.1   0.0     0.042        43     588     617 ..     432     461 ..     418     463 .. 0.88
   5 ?    0.3   0.0     0.037        38     589     616 ..     584     611 ..     565     614 .. 0.78

  Alignments for each domain:
  == domain 1    score: 0.6 bits;  conditional E-value: 0.03
   TIGR02696 586 pvdk..igevigpkgkvinsiqdetgaeisiedd 617
                  vdk  +g +igp g v   i + t ++i i dd
  MMETSP1137-20121227|1860_1  15 LVDKtmLGRLIGPGGSVRTGIMQRTQTDIFIFDD 48 
                 5665447***********************9998 PP

  == domain 2    score: 6.4 bits;  conditional E-value: 0.00051
   TIGR02696 580 viavkipvd..kigevigpkgkvinsiqdetgaeisie 615
                 +++  + vd  ++g++ig kg ++n++q +tg  i + 
  MMETSP1137-20121227|1860_1 170 MLRHDMLVDrsQLGKLIGSKGSTLNELQAKTGCGIFVV 207
                 5555555552269*******************999765 PP

  == domain 3    score: 9.9 bits;  conditional E-value: 4.3e-05
   TIGR02696 575 etaprviavkipvdk..igevigpkgkvinsiqdetgaeisied 616
                 e  p +++ +i vdk  +g++ig kg ++n++q  tg ++ + d
  MMETSP1137-20121227|1860_1 301 EALPGMLRHEILVDKasLGKLIGAKGNTLNELQTRTGCNVFVVD 344
                 556888888999998667*********************97654 PP

  == domain 4    score: 0.1 bits;  conditional E-value: 0.042
   TIGR02696 588 dkigevigpkgkvinsiqdetgaeisiedd 617
                   +g++igp+g    ++++ +g e+ i dd
  MMETSP1137-20121227|1860_1 432 ASVGKLIGPQGSKRRELTQRSGCEMYIVDD 461
                 458**********************99998 PP

  == domain 5    score: 0.3 bits;  conditional E-value: 0.037
   TIGR02696 589 kigevigpkgkvinsiqdetgaeisied 616
                  +g+vig  g ++ ++q +tg  i + d
  MMETSP1137-20121227|1860_1 584 DLGKVIGSGGNTLKEMQAKTGCGIFVVD 611
                 38*******************9997755 PP

>> TIGR01952  nusA_arch: NusA family KH domain protein, archaeal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   0.0       3.1   3.1e+03      38      61 ..      15      38 ..      14      50 .. 0.66
   2 !    5.7   0.0    0.0037       3.8      37      72 ..     175     210 ..     159     215 .. 0.86
   3 !    4.8   0.0    0.0069       7.1      38      71 ..     312     345 ..     299     350 .. 0.91
   4 ?    3.5   0.0     0.017        17      37      72 ..     427     462 ..     418     487 .. 0.90
   5 !    5.3   0.0    0.0049         5      38      71 ..     579     612 ..     572     648 .. 0.91

  Alignments for each domain:
  == domain 1    score: -3.8 bits;  conditional E-value: 3.1
   TIGR01952 38 vvkkgemgvAiGkgGanvkkveel 61
                +v k  +g  iG+gG+    + ++
  MMETSP1137-20121227|1860_1 15 LVDKTMLGRLIGPGGSVRTGIMQR 38
                677888888999998765555555 PP

  == domain 2    score: 5.7 bits;  conditional E-value: 0.0037
   TIGR01952  37 fvvkkgemgvAiGkgGanvkkveellgkkvelvees 72 
                 ++v + ++g  iG +G++ ++++++ g  + +v+++
  MMETSP1137-20121227|1860_1 175 MLVDRSQLGKLIGSKGSTLNELQAKTGCGIFVVDKE 210
                 68999*********************9999999875 PP

  == domain 3    score: 4.8 bits;  conditional E-value: 0.0069
   TIGR01952  38 vvkkgemgvAiGkgGanvkkveellgkkvelvee 71 
                 +v k ++g  iG +G++ ++++ + g +v +v++
  MMETSP1137-20121227|1860_1 312 LVDKASLGKLIGAKGNTLNELQTRTGCNVFVVDK 345
                 79999*********************99999976 PP

  == domain 4    score: 3.5 bits;  conditional E-value: 0.017
   TIGR01952  37 fvvkkgemgvAiGkgGanvkkveellgkkvelvees 72 
                 ++++k ++g  iG++G++ ++++++ g ++ +v++ 
  MMETSP1137-20121227|1860_1 427 LLIEKASVGKLIGPQGSKRRELTQRSGCEMYIVDDV 462
                 6899*********************99999999875 PP

  == domain 5    score: 5.3 bits;  conditional E-value: 0.0049
   TIGR01952  38 vvkkgemgvAiGkgGanvkkveellgkkvelvee 71 
                 ++ k ++g  iG gG++ k+++++ g  + +v++
  MMETSP1137-20121227|1860_1 579 LLDKADLGKVIGSGGNTLKEMQAKTGCGIFVVDK 612
                 678999******************9999999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (676 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        93  (0.0226719); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.44u 0.15s 00:00:00.59 Elapsed: 00:00:00.59
# Mc/sec: 1512.28
//
Query:       MMETSP1137-20121227|1862_1  [L=507]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (507 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       150  (0.0365675); expected 82.0 (0.02)
Passed bias filter:                      100  (0.0243784); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.16s 00:00:00.53 Elapsed: 00:00:00.82
# Mc/sec: 816.08
//
Query:       MMETSP1137-20121227|1863_1  [L=363]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (363 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        58  (0.0141394); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.15s 00:00:00.42 Elapsed: 00:00:00.42
# Mc/sec: 1140.76
//
Query:       MMETSP1137-20121227|1864_1  [L=323]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (323 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        81  (0.0197465); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.15s 00:00:00.39 Elapsed: 00:00:00.36
# Mc/sec: 1184.24
//
Query:       MMETSP1137-20121227|1865_1  [L=361]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.8e-20   70.8   5.1    2.9e-14   50.3   1.0    2.1  2  TIGR03377 glycerol3P_GlpA: glycerol-3-phosphate dehydrogenase, anaerobic, A subunit
    9.5e-07   26.0   0.5    1.6e-06   25.2   0.2    1.5  2  TIGR03364 HpnW_proposed: FAD dependent oxidoreductase TIGR03364
    1.3e-05   22.9   0.6    2.1e-05   22.2   0.4    1.3  1  TIGR02032 GG-red-SF: geranylgeranyl reductase family
      3e-05   21.1   2.0    0.00013   19.0   0.3    2.0  2  TIGR02352 thiamin_ThiO: glycine oxidase ThiO
      7e-05   19.9   0.4     0.0001   19.3   0.3    1.2  1  TIGR03197 MnmC_Cterm: tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain
    8.6e-05   18.3   0.1    0.00013   17.7   0.1    1.1  1  TIGR01372 soxA: sarcosine oxidase, alpha subunit family
    0.00025   17.6   0.0    0.00036   17.0   0.0    1.2  1  TIGR03140 AhpF: alkyl hydroperoxide reductase, F subunit
    0.00051   17.1   0.1    0.00069   16.7   0.1    1.1  1  TIGR01790 carotene-cycl: lycopene cyclase family protein
    0.00091   15.5   0.0     0.0014   14.9   0.0    1.2  1  TIGR03997 mycofact_OYE_2: mycofactocin system FadH/OYE family oxidoreductase 2
      0.001   15.6   0.2     0.0015   15.1   0.2    1.1  1  TIGR01350 lipoamide_DH: dihydrolipoyl dehydrogenase
     0.0015   15.4   1.0     0.0022   14.9   0.7    1.2  1  TIGR03378 glycerol3P_GlpB: glycerol-3-phosphate dehydrogenase, anaerobic, B subunit
     0.0049   13.6   0.2     0.0065   13.2   0.1    1.1  1  TIGR01438 TGR: thioredoxin and glutathione reductase
     0.0071   13.5   1.2       0.01   13.0   0.4    1.5  2  TIGR03467 HpnE: squalene-associated FAD-dependent desaturase
  ------ inclusion threshold ------
      0.011   12.8   0.3      0.015   12.3   0.2    1.1  1  TIGR01421 gluta_reduc_1: glutathione-disulfide reductase
      0.012   12.0   0.2      0.016   11.6   0.2    1.1  1  TIGR02061 aprA: adenylylsulfate reductase, alpha subunit
      0.013   11.4   0.3      0.018   11.0   0.2    1.1  1  TIGR01816 sdhA_forward: succinate dehydrogenase, flavoprotein subunit
      0.013   12.1   0.8      0.021   11.5   0.5    1.2  1  TIGR00275 TIGR00275: flavoprotein, HI0933 family
      0.016   11.8   0.1      0.023   11.3   0.1    1.1  1  TIGR04018 Bthiol_YpdA: putative bacillithiol system oxidoreductase, YpdA family
      0.022   11.3   0.2       0.03   10.8   0.1    1.2  1  TIGR01813 flavo_cyto_c: flavocytochrome c
      0.023   11.1   0.5      0.037   10.4   0.3    1.2  1  TIGR01424 gluta_reduc_2: glutathione-disulfide reductase
      0.031   10.9   0.0      0.045   10.4   0.0    1.2  1  TIGR01373 soxB: sarcosine oxidase, beta subunit family
      0.032   10.5   0.3      0.042   10.1   0.2    1.1  1  TIGR01812 sdhA_frdA_Gneg: succinate dehydrogenase or fumarate reductase, flavoprotein subunit
      0.035   10.7   0.2       0.11    9.1   0.0    1.7  2  TIGR01984 UbiH: 2-polyprenyl-6-methoxyphenol 4-hydroxylase
      0.052   10.0   0.9       0.08    9.4   0.6    1.3  1  TIGR02734 crtI_fam: phytoene desaturase


Domain annotation for each model (and alignments):
>> TIGR03377  glycerol3P_GlpA: glycerol-3-phosphate dehydrogenase, anaerobic, A subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.3   1.0   1.7e-16   2.9e-14       1      53 [.     102     154 ..     102     161 .. 0.94
   2 !   22.2   0.1   5.8e-08   9.9e-06     123     212 ..     259     350 ..     238     359 .. 0.84

  Alignments for each domain:
  == domain 1    score: 50.3 bits;  conditional E-value: 1.7e-16
   TIGR03377   1 dvvviGGGatGaGilRDlalRglkvvLlekkdlasGttgRnhGLLhsGaRYav 53 
                 d++viGGGatG G++ D + Rglkv +++++d asGt++R   L+h G RY  
  MMETSP1137-20121227|1865_1 102 DMLVIGGGATGCGVAMDATTRGLKVAVIDRADFASGTSSRSTKLIHGGLRYLA 154
                 579************************************************75 PP

  == domain 2    score: 22.2 bits;  conditional E-value: 5.8e-08
   TIGR03377 123 alnkelikavkvpDgtvDpfrlvaanvldakehGariltytkvvgliregdrvtgvkvedlktgeeee..ieaevvvnaaGaWaqeiaelad 212
                 +  k+l++a+ + Dg  D  r++++ +l a + Ga   +y +v +l+++++  +g     +  g  ++   e  +vvna G++++ +  +a+
  MMETSP1137-20121227|1865_1 259 SEGKRLQGALVIHDGQQDDARMAVHIMLTAAKAGAACANYVEVKSLLKTHEGAAGEPGSAAVCGAVVHdxAERPQVVNACGSFSDAVRRMAQ 350
                 4568899******************************************99999988777776665541156679*********99999885 PP

>> TIGR03364  HpnW_proposed: FAD dependent oxidoreductase TIGR03364
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.2   0.2   9.6e-09   1.6e-06       2      41 ..     102     141 ..     101     145 .. 0.95
   2 ?   -3.2   0.0       4.1   7.1e+02     125     149 ..     259     283 ..     237     287 .. 0.69

  Alignments for each domain:
  == domain 1    score: 25.2 bits;  conditional E-value: 9.6e-09
   TIGR03364   2 dvvvvGaGivGlahAlaaarrGlkVtvierssraaGAsvr 41 
                 d++v+G+G  G   A+ a+ rGlkV+vi+r++ a G s r
  MMETSP1137-20121227|1865_1 102 DMLVIGGGATGCGVAMDATTRGLKVAVIDRADFASGTSSR 141
                 899*********************************9976 PP

  == domain 2    score: -3.2 bits;  conditional E-value: 4.1
   TIGR03364 125 lrldgllgglhladelrvepreaip 149
                  + ++l+g+l ++d  + + r a++
  MMETSP1137-20121227|1865_1 259 SEGKRLQGALVIHDGQQDDARMAVH 283
                 4567889999999999999999887 PP

>> TIGR02032  GG-red-SF: geranylgeranyl reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.2   0.4   1.2e-07   2.1e-05       1      35 [.     101     135 ..     101     150 .. 0.96

  Alignments for each domain:
  == domain 1    score: 22.2 bits;  conditional E-value: 1.2e-07
   TIGR02032   1 yDvvvvGaGpaGssaAlrlakkGlrVlllekkelp 35 
                 +D++v+G+G  G+ +A ++ + Gl+V++++++++ 
  MMETSP1137-20121227|1865_1 101 FDMLVIGGGATGCGVAMDATTRGLKVAVIDRADFA 135
                 7******************************9985 PP

>> TIGR02352  thiamin_ThiO: glycine oxidase ThiO
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.3   7.6e-07   0.00013       1      38 [.     103     140 ..     103     144 .. 0.95
   2 ?    1.3   0.0      0.18        31     133     185 ..     261     312 ..     239     344 .. 0.84

  Alignments for each domain:
  == domain 1    score: 19.0 bits;  conditional E-value: 7.6e-07
   TIGR02352   1 vlviGgGviGlsvAveLakrghkvtllekdevgsgAsk 38 
                 +lviGgG  G  vA+ +  rg kv+++++++++sg+s+
  MMETSP1137-20121227|1865_1 103 MLVIGGGATGCGVAMDATTRGLKVAVIDRADFASGTSS 140
                 69*********************************996 PP

  == domain 2    score: 1.3 bits;  conditional E-value: 0.18
   TIGR02352 133 seeirgavflpedaqvdprellkaLvkaleklGveiieevevqeieargekvt 185
                 +++++ga+ + + +q d+r++++ ++ a+ k+G+ + + vev+++ + +e + 
  MMETSP1137-20121227|1865_1 261 GKRLQGALVIHDGQQDDARMAVHIMLTAA-KAGAACANYVEVKSLLKTHEGAA 312
                 4589999****************999998.99******999999988887555 PP

>> TIGR03197  MnmC_Cterm: tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.3     6e-07    0.0001       2      47 ..     103     147 ..     102     157 .. 0.91

  Alignments for each domain:
  == domain 1    score: 19.3 bits;  conditional E-value: 6e-07
   TIGR03197   2 vavIGaGiAgaalalsLarrGvqvtllekdeklaqgASgnrqGaly 47 
                 ++vIG+G  g+ +a   + rG++v +++++ + a+g+S+  + +++
  MMETSP1137-20121227|1865_1 103 MLVIGGGATGCGVAMDATTRGLKVAVIDRA-DFASGTSSRSTKLIH 147
                 68****************************.9******98776665 PP

>> TIGR01372  soxA: sarcosine oxidase, alpha subunit family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.1   7.4e-07   0.00013     169     216 ..     101     148 ..      90     160 .. 0.90

  Alignments for each domain:
  == domain 1    score: 17.7 bits;  conditional E-value: 7.4e-07
   TIGR01372 169 cDvLvvGaGpaGLaaAraAaraGarvilvdeqaeaGGsllseaetidG 216
                  D+Lv+G+G++G   A  A++ G++v ++d    a G+   +++ i G
  MMETSP1137-20121227|1865_1 101 FDMLVIGGGATGCGVAMDATTRGLKVAVIDRADFASGTSSRSTKLIHG 148
                 69*****************************99999999988888877 PP

>> TIGR03140  AhpF: alkyl hydroperoxide reductase, F subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.0   2.1e-06   0.00036     206     242 ..      94     130 ..      83     146 .. 0.86

  Alignments for each domain:
  == domain 1    score: 17.0 bits;  conditional E-value: 2.1e-06
   TIGR03140 206 aeeekekydvlvvGgGPagaaaaiyaarkGlkvalva 242
                 +  + ek+d+lv+GgG  g   a+ a+ +Glkva++ 
  MMETSP1137-20121227|1865_1  94 QRLKSEKFDMLVIGGGATGCGVAMDATTRGLKVAVID 130
                 4557899***************************994 PP

>> TIGR01790  carotene-cycl: lycopene cyclase family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.1     4e-06   0.00069       1      34 [.     102     135 ..     102     143 .. 0.89

  Alignments for each domain:
  == domain 1    score: 16.7 bits;  conditional E-value: 4e-06
   TIGR01790   1 DliviGgGlAglaiAlelakpglrvqlieaapkl 34 
                 D++viGgG  g+ +A+  + +gl+v +i+ a+ +
  MMETSP1137-20121227|1865_1 102 DMLVIGGGATGCGVAMDATTRGLKVAVIDRADFA 135
                 99**************************977655 PP

>> TIGR03997  mycofact_OYE_2: mycofactocin system FadH/OYE family oxidoreductase 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   8.1e-06    0.0014     380     435 ..     101     155 ..      85     179 .. 0.79

  Alignments for each domain:
  == domain 1    score: 14.9 bits;  conditional E-value: 8.1e-06
   TIGR03997 380 kkvlvvGgGPaGleaaataarrGhrvtllereeelGGqvklaaklpgreelaelvr 435
                   +lv+GgG +G   a+ a++rG +v +++r++   G     +kl   ++l+ l +
  MMETSP1137-20121227|1865_1 101 FDMLVIGGGATGCGVAMDATTRGLKVAVIDRADFASGTSSRSTKL-IHGGLRYLAQ 155
                 4789*****************************999987776666.4555555555 PP

>> TIGR01350  lipoamide_DH: dihydrolipoyl dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.2   8.7e-06    0.0015       2      34 ..     101     133 ..     100     139 .. 0.89

  Alignments for each domain:
  == domain 1    score: 15.1 bits;  conditional E-value: 8.7e-06
   TIGR01350   2 ydvvviGgGpgGYvaAiraaqlglkvalvekek 34 
                 +d++viGgG  G   A+ a   glkva++++ +
  MMETSP1137-20121227|1865_1 101 FDMLVIGGGATGCGVAMDATTRGLKVAVIDRAD 133
                 8****************************9954 PP

>> TIGR03378  glycerol3P_GlpB: glycerol-3-phosphate dehydrogenase, anaerobic, B subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.7   1.3e-05    0.0022       1      44 [.     101     144 ..     101     150 .. 0.89

  Alignments for each domain:
  == domain 1    score: 14.9 bits;  conditional E-value: 1.3e-05
   TIGR03378   1 fDviiiGgGlaGlscalrlaeaGkktaiiaaGqsalhFssGslD 44 
                 fD+++iGgG  G   a+ ++ +G k+a+i +   a   ss s  
  MMETSP1137-20121227|1865_1 101 FDMLVIGGGATGCGVAMDATTRGLKVAVIDRADFASGTSSRSTK 144
                 9****************************998877777777665 PP

>> TIGR01438  TGR: thioredoxin and glutathione reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   0.1   3.8e-05    0.0065       2      35 ..     100     133 ..      99     149 .. 0.88

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 3.8e-05
   TIGR01438   2 dydliviGgGsGGlaaakeaaklgakvllldfvk 35 
                 ++d++viGgG+ G   a +a+  g kv+++d  +
  MMETSP1137-20121227|1865_1 100 KFDMLVIGGGATGCGVAMDATTRGLKVAVIDRAD 133
                 8*****************************9765 PP

>> TIGR03467  HpnE: squalene-associated FAD-dependent desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   0.4   6.1e-05      0.01       2      35 ..     104     137 ..     103     147 .. 0.89
   2 ?   -3.5   0.0       6.2   1.1e+03     365     380 ..     235     250 ..     231     253 .. 0.81

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 6.1e-05
   TIGR03467   2 vvvGgGlAGLaAAveLaraGvrvtllEarrqlGG 35 
                 +v+GgG  G+  A+  +++G++v +++++  + G
  MMETSP1137-20121227|1865_1 104 LVIGGGATGCGVAMDATTRGLKVAVIDRADFASG 137
                 79*************************9988766 PP

  == domain 2    score: -3.5 bits;  conditional E-value: 6.2
   TIGR03467 365 kllkakvikekrAtFa 380
                 ++ ++++i    AtFa
  MMETSP1137-20121227|1865_1 235 AVPPSRIISADEATFA 250
                 455799*********9 PP

>> TIGR01421  gluta_reduc_1: glutathione-disulfide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.2   8.8e-05     0.015       2      36 ..     100     134 ..      99     141 .. 0.89

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 8.8e-05
   TIGR01421   2 eydylviGGGsGGiasarraaeyGakallveekkl 36 
                 ++d+lviGGG+ G   a  a++ G k+++++  ++
  MMETSP1137-20121227|1865_1 100 KFDMLVIGGGATGCGVAMDATTRGLKVAVIDRADF 134
                 79****************************97664 PP

>> TIGR02061  aprA: adenylylsulfate reductase, alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.2   9.1e-05     0.016       1      38 [.     102     135 ..     102     156 .. 0.86

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 9.1e-05
   TIGR02061   1 dvlivGgGlggcGaafeaaywgkkkglkivlvekaave 38 
                 d+l++GgG +gcG a++a+    ++glk+ ++++a   
  MMETSP1137-20121227|1865_1 102 DMLVIGGGATGCGVAMDAT----TRGLKVAVIDRADFA 135
                 89**************986....689*******99864 PP

>> TIGR01816  sdhA_forward: succinate dehydrogenase, flavoprotein subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.2   0.00011     0.018       2      33 ..     100     131 ..      99     150 .. 0.92

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 0.00011
   TIGR01816   2 kfdvvvvGaGGaGlraalelakeglktavvtk 33 
                 kfd++v+G+G +G   a++++ +glk+av+ +
  MMETSP1137-20121227|1865_1 100 KFDMLVIGGGATGCGVAMDATTRGLKVAVIDR 131
                 8****************************975 PP

>> TIGR00275  TIGR00275: flavoprotein, HI0933 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.5   0.00012     0.021       2      30 ..     104     132 ..     103     136 .. 0.93

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 0.00012
   TIGR00275   2 iiiGgGaaGlmaAitaaeegakVlllEkn 30 
                 ++iGgGa G   A+ a ++g+kV++++++
  MMETSP1137-20121227|1865_1 104 LVIGGGATGCGVAMDATTRGLKVAVIDRA 132
                 7*************************986 PP

>> TIGR04018  Bthiol_YpdA: putative bacillithiol system oxidoreductase, YpdA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.1   0.00013     0.023       1      32 [.     102     133 ..     102     140 .. 0.92

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 0.00013
   TIGR04018   1 dviiiGaGPiGlaaaieakkaglsyliiekga 32 
                 d+++iG+G +G  +a++a  +gl++ +i++  
  MMETSP1137-20121227|1865_1 102 DMLVIGGGATGCGVAMDATTRGLKVAVIDRAD 133
                 799**************************976 PP

>> TIGR01813  flavo_cyto_c: flavocytochrome c
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.1   0.00018      0.03       1      43 [.     102     143 ..     102     160 .. 0.90

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 0.00018
   TIGR01813   1 dvvvvGsGlAGlsaaleakkaglaevvvleKapviGGNsaiaa 43 
                 d++v+G G+ G   a++a+++g  +v v+++a+++ G s  ++
  MMETSP1137-20121227|1865_1 102 DMLVIGGGATGCGVAMDATTRG-LKVAVIDRADFASGTSSRST 143
                 689*******************.99************998765 PP

>> TIGR01424  gluta_reduc_2: glutathione-disulfide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.3   0.00022     0.037       3      39 ..     101     138 ..     100     148 .. 0.86

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 0.00022
   TIGR01424   3 ydlfviGaGsGGvraarlaaalGakvaiaeed.lvGGt 39 
                 +d++viG+G+ G   a  a++ G kva+ ++  +  Gt
  MMETSP1137-20121227|1865_1 101 FDMLVIGGGATGCGVAMDATTRGLKVAVIDRAdFASGT 138
                 9**************************99864144555 PP

>> TIGR01373  soxB: sarcosine oxidase, beta subunit family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   0.00026     0.045      29      81 ..      99     149 ..      82     159 .. 0.84

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 0.00026
   TIGR01373  29 peydviivGgGGhGlatayylakehGitnvavlekgwlGgGnvgrnttivrsn 81 
                 +++d++++GgG  G   a   a+  G+ +vav++++ + +G  +r t ++   
  MMETSP1137-20121227|1865_1  99 EKFDMLVIGGGATGCGVAM-DATTRGL-KVAVIDRADFASGTSSRSTKLIHGG 149
                 689***********99997.5888897.7******************999765 PP

>> TIGR01812  sdhA_frdA_Gneg: succinate dehydrogenase or fumarate reductase, flavoprotein subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.2   0.00025     0.042       1      30 [.     102     131 ..     102     152 .. 0.92

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 0.00025
   TIGR01812   1 DvvivGaGlAGlraAveaakkglkvavisk 30 
                 D++++G+G  G+  A++a+ +glkvavi +
  MMETSP1137-20121227|1865_1 102 DMLVIGGGATGCGVAMDATTRGLKVAVIDR 131
                 899************************976 PP

>> TIGR01984  UbiH: 2-polyprenyl-6-methoxyphenol 4-hydroxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   0.0   0.00063      0.11       1      56 [.     102     153 ..     102     175 .. 0.83
   2 ?   -0.9   0.0      0.72   1.2e+02     145     175 ..     260     289 ..     243     314 .. 0.78

  Alignments for each domain:
  == domain 1    score: 9.1 bits;  conditional E-value: 0.00063
   TIGR01984   1 dviivGgglvGlslAlaLsrksklkialieaksaeaakssfdarslalsagskqil 56 
                 d++++Ggg +G  +A+   + + lk+a+i+  +  +       rs+ l +g    l
  MMETSP1137-20121227|1865_1 102 DMLVIGGGATGCGVAMDATTRG-LKVAVIDRADFASG---TSSRSTKLIHGGLRYL 153
                 789*************999999.*******9998766...5666666666665555 PP

  == domain 2    score: -0.9 bits;  conditional E-value: 0.72
   TIGR01984 145 neqkleakLlvaAdGanskvreslsiaeeev 175
                 ++++l+++L++  dG++  +r +++i  +  
  MMETSP1137-20121227|1865_1 260 EGKRLQGALVIH-DGQQDDARMAVHIMLTAA 289
                 456899998875.9****9999999987655 PP

>> TIGR02734  crtI_fam: phytoene desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   0.6   0.00047      0.08       2      39 ..     104     141 ..     103     152 .. 0.87

  Alignments for each domain:
  == domain 1    score: 9.4 bits;  conditional E-value: 0.00047
   TIGR02734   2 vViGaGlgGLAlAirLaaaGievtvlekrdkpGGRagv 39 
                 +ViG+G+ G  +A+   + G +v v+++ d   G +++
  MMETSP1137-20121227|1865_1 104 LVIGGGATGCGVAMDATTRGLKVAVIDRADFASGTSSR 141
                 7***************************9988776554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (361 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       177  (0.0431497); expected 82.0 (0.02)
Passed bias filter:                      166  (0.0404681); expected 82.0 (0.02)
Passed Vit filter:                        64  (0.0156021); expected 4.1 (0.001)
Passed Fwd filter:                        24  (0.0058508); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              24  [number of targets reported over threshold]
# CPU time: 0.44u 0.16s 00:00:00.60 Elapsed: 00:00:00.46
# Mc/sec: 1035.83
//
Query:       MMETSP1137-20121227|1866_1  [L=625]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (625 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        94  (0.0229157); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.16s 00:00:00.56 Elapsed: 00:00:01.22
# Mc/sec: 676.17
//
Query:       MMETSP1137-20121227|1869_1  [L=336]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.7e-69  231.2   0.0    4.5e-69  230.9   0.0    1.1  1  TIGR01136 cysKM: cysteine synthases
    1.4e-68  229.1   0.0    1.8e-68  228.8   0.0    1.1  1  TIGR01139 cysK: cysteine synthase A
    2.2e-53  179.4   0.0    2.5e-53  179.2   0.0    1.0  1  TIGR01137 cysta_beta: cystathionine beta-synthase
      2e-48  162.9   0.0    2.5e-48  162.5   0.0    1.0  1  TIGR03945 PLP_SbnA_fam: 2,3-diaminopropionate biosynthesis protein SbnA
    6.9e-47  158.2   0.0      3e-46  156.1   0.0    1.8  1  TIGR01138 cysM: cysteine synthase B
    5.3e-08   30.2   0.0    0.00045   17.3   0.0    2.5  2  TIGR00260 thrC: threonine synthase
    1.6e-07   28.3   0.1      4e-07   27.0   0.1    1.6  1  TIGR02079 THD1: threonine dehydratase
    7.3e-07   25.9   0.3    1.5e-06   24.9   0.2    1.4  1  TIGR01124 ilvA_2Cterm: threonine ammonia-lyase, biosynthetic
    9.1e-07   25.9   1.0    1.4e-06   25.3   0.7    1.2  1  TIGR02991 ectoine_eutB: ectoine utilization protein EutB
    2.6e-06   24.5   0.2    3.4e-05   20.8   0.3    2.4  2  TIGR01127 ilvA_1Cterm: threonine dehydratase
    3.3e-05   20.7   0.1    0.00012   18.9   0.0    1.7  2  TIGR01747 diampropi_NH3ly: diaminopropionate ammonia-lyase family
    3.8e-05   20.2   0.0    0.00037   17.0   0.0    2.1  2  TIGR03528 2_3_DAP_am_ly: diaminopropionate ammonia-lyase
    4.8e-05   20.4   0.1      0.093    9.6   0.0    2.3  2  TIGR00263 trpB: tryptophan synthase, beta subunit
    0.00016   18.9   0.0    0.00047   17.4   0.0    1.8  3  TIGR01275 ACC_deam_rel: pyridoxal phosphate-dependent enzymes, D-cysteine desulfhydrase family


Domain annotation for each model (and alignments):
>> TIGR01136  cysKM: cysteine synthases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  230.9   0.0   1.5e-71   4.5e-69       3     299 .]      20     336 .]      18     336 .] 0.87

  Alignments for each domain:
  == domain 1    score: 230.9 bits;  conditional E-value: 1.5e-71
   TIGR01136   3 eliGntPlvrln.lseelk..aevlvKlEsrnPsgSvKdRialsmildAekrgllkkgktiieatSGNtGiaLAmvaaakgyklilvmpetmslERrkllkayGaelvlteaeegmk.gai..ekakelaeeepe.....kyvllkqfeNpaNpeaHrkttgpEilkdtdgk...idafvagvGtgGtitGvgrvlkekkpnvkivavePaespvlseg.....kpgphkiqgigagf..iPkildeelldevikvededaietarrlakeegilvGiSsGaavaaalkvakklekedkkivvilpdagerYLstelf 299
                 ++i +tP v+l  l++++   ++++ KlE+  P++S KdRia +m+++A ++g+l++++t+ie tSGNtG +LA+v+aa g+ +++vm    s+ER ++++a+Gae++l+e+ eg+  g +  +  + + +e+++       +  +qfe + N++aH + tgpE++ +++g    +dafv  vG gGt  Gv+ +l+ +  + k + vePa ++vls+         phkiqg g g+  + ++  +   d  i+v++e+aie+ r lak+egi++G S Ga+vaaa k+ +++  ++ ++ ++++d+g +YLst+l+
  MMETSP1137-20121227|1869_1  20 HAIHETPCVNLSrLTAHIGlaGSIVSKLEYLSPGFSKKDRIARQMVEEALADGHLQPQQTVIELTSGNTGTGLAIVCAALGHPFVAVMSRGNSMERARMMSALGAEVILVEQCEGSVpGQVsgDDLQRVFDETAKlvverGAFRADQFELEGNVRAHLEHTGPELISQVKGAgmrLDAFVDFVGSGGTFAGVSAALRAAWVHAKCYVVEPAGAAVLSGRndalsGLAPHKIQGGGYGMprLSALAHAGPPDGYIEVSSEEAIEMCRLLAKHEGIFSGFSGGANVAAAAKLLRDPF-KGGTVACLICDSGLKYLSTDLW 336
                 57899******99666554449******************************************************************************************9997414432222333333332211100245789***********************997777*****************************************99866665578*****998885224455667788*******************************************97.79******************97 PP

>> TIGR01139  cysK: cysteine synthase A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  228.8   0.0     6e-71   1.8e-68       4     298 .]      21     336 .]      18     336 .] 0.89

  Alignments for each domain:
  == domain 1    score: 228.8 bits;  conditional E-value: 6e-71
   TIGR01139   4 liGntPlvrLn...laeeakaevlvkleslnPsssvkdrialamiedaekegllkkgktiveatsGntGialamvaaargykliltmpetmslerrkllkayGaelvLtdgaegm.kgai.........ekaeelveetpnkylllkqfenpanpeihrkttapeilkdldgk...ldafvagvGtGGtitGvgevlkekkpdikvvavePaespvlsgg.....kpgphkiqGigagf..iPkvLdkevidevikvsdeeaietarrlakeeGilvGissGaavaaalkvakklekdkkivvilpdtgerYlstaLf 298
                  i +tP v+L     +++ +++++ kle+l P++s kdria +m+e+a  +g+l++++t++e tsGntG +la+v+aa g+ ++++m    s+er +++ a+Gae++L +  eg   g +         ++  +lv e++   + + qfe + n ++h + t+pe++ +++g+   ldafv  vG GGt +Gv+ +l+ +  + k ++vePa ++vlsg         phkiqG g g   + +       d  i+vs+eeaie++r lak+eGi++G s+Ga+vaaa k+ +++ k+ ++ ++++d+g +Ylst+L+
  MMETSP1137-20121227|1869_1  21 AIHETPCVNLSrltAHIGLAGSIVSKLEYLSPGFSKKDRIARQMVEEALADGHLQPQQTVIELTSGNTGTGLAIVCAALGHPFVAVMSRGNSMERARMMSALGAEVILVEQCEGSvPGQVsgddlqrvfDETAKLVVERG--AFRADQFELEGNVRAHLEHTGPELISQVKGAgmrLDAFVDFVGSGGTFAGVSAALRAAWVHAKCYVVEPAGAAVLSGRndalsGLAPHKIQGGGYGMprLSALAHAGPPDGYIEVSSEEAIEMCRLLAKHEGIFSGFSGGANVAAAAKLLRDPFKGGTVACLICDSGLKYLSTDLW 336
                 7899****998644577899****************************************************************************************99888742566522111111134555555666..45899**********************9987777*******************************************977766678******99886324455566778*****************************************************************98 PP

>> TIGR01137  cysta_beta: cystathionine beta-synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  179.2   0.0   8.5e-56   2.5e-53       5     308 ..      18     333 ..      14     336 .] 0.92

  Alignments for each domain:
  == domain 1    score: 179.2 bits;  conditional E-value: 8.5e-56
   TIGR01137   5 ildliGntPlvrlnkvsk..glkaevlakveffnaGGsvkdrialrmiedaeksGrlkpgdtliePtsGntGiGlalvaaikGykciivlPekvseekvdvlkalGaeiv.......rtPtaaafdsPesyigvakrlekeipgavildqyanasnPlahydttgeeileqleg...kldalvagvGtGGtitGiarklkekedkvrivGadPeGsilaepeelnktektdykveGiGydf..iPtvldrkvvdeiiktddkesfkmarrlikeegllvgGssGsavvaalkvaeeelkeddvivvllpdsirnyltk 308
                  ++ i +tP v l +++   gl++ +++k+e++ +G s kdria++m+e+a ++G+l+p +t+ie tsGntG Gla+v+a  G+  + v+    s e+  ++ alGae++        +P +++ d+ +  ++ + +l+ e  ga+  dq++   n  ah + tg+e++ q++g   +lda+v  vG GGt +G++  l++   + +   ++P G+ +  + +   ++ +++k++G Gy +  + +       d +i+++ +e+ +m+r l+k+eg++ g s G+ v+aa k  ++  k +  +  l+ ds+ +yl+ 
  MMETSP1137-20121227|1869_1  18 AMHAIHETPCVNLSRLTAhiGLAGSIVSKLEYLSPGFSKKDRIARQMVEEALADGHLQPQQTVIELTSGNTGTGLAIVCAALGHPFVAVMSRGNSMERARMMSALGAEVIlveqcegSVPGQVSGDDLQRVFDETAKLVVE-RGAFRADQFELEGNVRAHLEHTGPELISQVKGagmRLDAFVDFVGSGGTFAGVSAALRAAWVHAKCYVVEPAGAAVLSGRNDALSGLAPHKIQGGGYGMprLSALAHAGPPDGYIEVSSEEAIEMCRLLAKHEGIFSGFSGGANVAAAAKLLRDPFKGG-TVACLICDSGLKYLST 333
                 567899**********99899****************************************************************************************9444333335999999****999*9*****99.69******************************9999**********************99988888889****9777777999999********99986324455667789******************************************888887.9999*********985 PP

>> TIGR03945  PLP_SbnA_fam: 2,3-diaminopropionate biosynthesis protein SbnA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  162.5   0.0   8.7e-51   2.5e-48       3     297 ..      20     333 ..      18     334 .. 0.89

  Alignments for each domain:
  == domain 1    score: 162.5 bits;  conditional E-value: 8.7e-51
   TIGR03945   3 sligntplvkleklfedekv..elfaKlEglnpagSvKdrtAlallekaikegeikpgttiiESsSGnlaiaLamvcaalGlkficvvDpkiseanlkllralgaevevveekde..tggyLkaRlarvrellae...ipdavwlNQYaneanaeahyettaeeileelk....evdylfvgvsttGtlaGvarrlrekspevkvvavDavGSvifggepgk......Rlip..GlGasvvpelldeslidevvkvseletvaacrelleregilaGgSsGtvvaavkkllakieegstvvailpDrGerYldt 297
                 ++i++tp+v+l++l+++  +  ++  KlE+l+p+ S Kdr A++++e+a+++g+++p++t+iE +SGn +++La+vcaalG  f++v+    s +  +++ algaev +ve+ +    g+  +  l+rv + +a+      a+   Q++ e n++ah e+t+ e+++++k    ++d ++  v+++Gt aGv+ +lr ++ ++k   v+  G  ++ g++         +i   G G  + + l ++   d +++vs +e++ +cr l+++egi+ G S G+ vaa++kll++  +g tv ++++D G +Yl+t
  MMETSP1137-20121227|1869_1  20 HAIHETPCVNLSRLTAHIGLagSIVSKLEYLSPGFSKKDRIARQMVEEALADGHLQPQQTVIELTSGNTGTGLAIVCAALGHPFVAVMSRGNSMERARMMSALGAEVILVEQCEGsvPGQVSGDDLQRVFDETAKlvvERGAFRADQFELEGNVRAHLEHTGPELISQVKgagmRLDAFVDFVGSGGTFAGVSAALRAAWVHAKCYVVEPAGAAVLSGRNDAlsglapHKIQggGYGMPRLSALAHAGPPDGYIEVSSEEAIEMCRLLAKHEGIFSGFSGGANVAAAAKLLRDPFKGGTVACLICDSGLKYLST 333
                 6799***********998753379****************************************************************************************998656888888888886555542226899**************************9865567999999*******************************999877654322233366661156677789999999***************************************************************987 PP

>> TIGR01138  cysM: cysteine synthase B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  156.1   0.0     1e-48     3e-46       4     289 ..      20     335 ..      17     336 .] 0.84

  Alignments for each domain:
  == domain 1    score: 156.1 bits;  conditional E-value: 1e-48
   TIGR01138   4 klvGntplvrlkrllpe..edsevlvklegnnpaGsvkdrpalsmiveaekrGeikeGdvlieatsGntGialamvaalkGykvkllmpdnvseerkaalkayGaelilvdkeeGmeGardlarelvrkgeek..........lldqfnnpdnpkahytstGieiwqqtkG...rithfvsslGttGtimGvsrflkeqnpavqivGlqpaegsaieGlrri.....eseylpgifdaslv.........drvvdveqedaediarelakkegifvGvssGgavaaalrlarelek.avvvaiicdrGdrylstgv 289
                 +++ +tp v+l rl+++      ++ kle   p+ s kdr a  m+ ea+  G++++ +++ie tsGntG  la+v+a++G +   +m    s er +++ a Gae+ilv++ eG    +   ++l+r  +e             dqf+   n +ah   tG+e+  q kG   r+  fv  +G++Gt  Gvs  l+      +   ++pa +  + G +       +++++ g +   ++         d  ++v  e+a ++ r lak+egif G s G+ vaaa +l r+  k + v ++icd G +ylst +
  MMETSP1137-20121227|1869_1  20 HAIHETPCVNLSRLTAHigLAGSIVSKLEYLSPGFSKKDRIARQMVEEALADGHLQPQQTVIELTSGNTGTGLAIVCAALGHPFVAVMSRGNSMERARMMSALGAEVILVEQCEGSVPGQVSGDDLQRVFDETaklvvergafRADQFELEGNVRAHLEHTGPELISQVKGagmRLDAFVDFVGSGGTFAGVSAALRAAWVHAKCYVVEPAGAAVLSGRNDAlsglaPHKIQGGGYGMPRLsalahagppDGYIEVSSEEAIEMCRLLAKHEGIFSGFSGGANVAAAAKLLRDPFKgGTVACLICDSGLKYLSTDL 335
                 56889***********9666678*******************************************************************************************9876666666666655443334333344467***********************9996667999********************9999999999999888888876651111144444444544333222333344889***************************************98884677789**********987 PP

>> TIGR00260  thrC: threonine synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.0   1.5e-06   0.00045      21     104 ..      23     108 ..      10     130 .. 0.76
   2 !   10.2   0.0   0.00023     0.067     275     314 ..     274     313 ..     215     323 .. 0.85

  Alignments for each domain:
  == domain 1    score: 17.3 bits;  conditional E-value: 1.5e-06
   TIGR00260  21 gstelfrspklaeevga.enlyvkelfhgPtlaFKDrgl.qfvavlltkalelgnetvlcAtsGdtgaaaaealagkanvkvvvLy 104
                   t+ ++  +l++++g+   +  k +++ P ++ KDr   q+v  +l+    + ++tv+  tsG+tg  +a   a+    +v v+ 
  MMETSP1137-20121227|1869_1  23 HETPCVNLSRLTAHIGLaGSIVSKLEYLSPGFSKKDRIArQMVEEALADGHLQPQQTVIELTSGNTGTGLAIVCAALGHPFVAVMS 108
                 56899999999*****9889999*************97313444556666666666************999878877766666664 PP

  == domain 2    score: 10.2 bits;  conditional E-value: 0.00023
   TIGR00260 275 svsdeeileaikklaeeegyllephtavavaalkklvekg 314
                 +vs+ee +e  ++la++eg++    +++ vaa  kl+ + 
  MMETSP1137-20121227|1869_1 274 EVSSEEAIEMCRLLAKHEGIFSGFSGGANVAAAAKLLRDP 313
                 789********************************99865 PP

>> TIGR02079  THD1: threonine dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.0   0.1   1.4e-09     4e-07      14     215 ..      22     240 ..      16     330 .. 0.70

  Alignments for each domain:
  == domain 1    score: 27.0 bits;  conditional E-value: 1.4e-09
   TIGR02079  14 vketPlqknerlsekyk..aeiylkredlqevrsyklrGaynkl.kqlsdeel..ekgvvcasaGnhaqGvayacrklgvkgtvfmPvttPkqkvdkvklfGgefievilv....Gdtfdeaaaaakkavekegktlip...Pfd.dkdiieGqg.....tvaveileqleee..kidlvlvpvGGGGlisGvtsylkekskktkiigvePeGapslkaslk 215
                 ++etP  + +rl+++ +   +i  k e l+   s k r a +++ ++l+d +l  +++v+  ++Gn   G+a  c +lg     f+ v++    +++ ++      evilv    G++  + + +  + v +e ++l+     f  d+  +eG         + e+++q++ +  + d  +  vG GG  +Gv++ l++   + k   veP+Ga+ l+    
  MMETSP1137-20121227|1869_1  22 IHETPCVNLSRLTAHIGlaGSIVSKLEYLSPGFSKKDRIARQMVeEALADGHLqpQQTVIELTSGNTGTGLAIVCAALGHP---FVAVMSRGNSMERARMMSALGAEVILVeqceGSVPGQVSGDDLQRVFDETAKLVVergAFRaDQFELEGNVrahleHTGPELISQVKGAgmRLDAFVDFVGSGGTFAGVSAALRAAWVHAKCYVVEPAGAAVLSGRND 240
                 7889998888998886522689999***************9999778888765226899999**************99765...6666666666777766655555555543334788888888888888888888775222343144446665411111457799****998899***************************************9976544 PP

>> TIGR01124  ilvA_2Cterm: threonine ammonia-lyase, biosynthetic
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.9   0.2     5e-09   1.5e-06      12     208 ..      19     236 ..      11     245 .. 0.83

  Alignments for each domain:
  == domain 1    score: 24.9 bits;  conditional E-value: 5e-09
   TIGR01124  12 yeaavetplekaaklser..lknrvllkredlqpvfsfklrGaynkmaqlsae...qkakGviaasaGnhaqGvalsakklGvkavivmpettpeikvdavkafGgevvl............hGenydeakakalelaqekgltfiapfd.dplviaGqGtvalellrqvee...dldavfvpvGGGGliaGvaalvkqllpeikvigveaedsaalk 208
                  +a  etp  + ++l+++  l   ++ k e l p fs k r a +++ +  a+   q  + vi  ++Gn   G+a+ ++ lG   v vm +  +  +   + a G+ev+l             G++ +   +++ +l  e+g      f+ +  v a     + el++qv+     lda    vG GG  aGv+a +++   + k   ve+  +a+l 
  MMETSP1137-20121227|1869_1  19 MHAIHETPCVNLSRLTAHigLAGSIVSKLEYLSPGFSKKDRIARQMVEEALADghlQPQQTVIELTSGNTGTGLAIVCAALGHPFVAVMSRGNSMERARMMSALGAEVILveqcegsvpgqvSGDDLQRVFDETAKLVVERGAFRADQFElEGNVRAHLEHTGPELISQVKGagmRLDAFVDFVGSGGTFAGVSAALRAAWVHAKCYVVEPAGAAVLS 236
                 4677899999999999873356899*********************987666523345689************************************************844444433333347888889999999******99999**944578999999********986221455555569**************************99988775 PP

>> TIGR02991  ectoine_eutB: ectoine utilization protein EutB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.3   0.7   4.9e-09   1.4e-06      16     198 ..      21     225 ..      12     247 .. 0.81

  Alignments for each domain:
  == domain 1    score: 25.3 bits;  conditional E-value: 4.9e-09
   TIGR02991  16 rveetplveseslsellGv..pvllklesrqttGsfklrGatnavl.slsda..eraaGvvaastGnhGralayaakkegvravicmselvpqnkvdeirrlGaevrivGr.........sqddaq...eeverlvkerGlvmlppfdha.divaGqGtlglevveqvpdlalvl...vp.lsGGGlasGvavavkalkpatrvi 198
                  ++etp v+ + l+  +G    +  kle   +  s k r a + v  +l+d+  + ++ v+  ++Gn G +la   ++ g + v  ms+   +++   +  lGaev +v +         s dd q   +e  +lv erG      f+ + ++ a     g e++ qv  + + l   v+ +  GG  +Gv++a++a+  +++  
  MMETSP1137-20121227|1869_1  21 AIHETPCVNLSRLTAHIGLagSIVSKLEYLSPGFSKKDRIARQMVEeALADGhlQPQQTVIELTSGNTGTGLAIVCAALGHPFVAVMSRGNSMERARMMSALGAEVILVEQcegsvpgqvSGDDLQrvfDETAKLVVERGAFRADQFELEgNVRAHLEHTGPELISQVKGAGMRLdafVDfVGSGGTFAGVSAALRAAWVHAKCY 225
                 5899**********99997224778****************999963577662256799***********************************************9995433333333467998844458889*************965267789999*********99888653335524558999********987777655 PP

>> TIGR01127  ilvA_1Cterm: threonine dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   0.3   1.2e-07   3.4e-05      15     186 ..      41     232 ..      27     241 .. 0.75
   2 ?   -0.5   0.0      0.34        99     229     282 ..     270     324 ..     268     331 .. 0.69

  Alignments for each domain:
  == domain 1    score: 20.8 bits;  conditional E-value: 1.2e-07
   TIGR01127  15 aevylklenlqktGsfkirGalnkiaklsee...ekkrGvvaasaGnhaqGvalaakvfgikakivmPesaplskvkatksyGaeviL............hGadfDeayklaeelaeeegrvfvhafdDe.fviaGqGtlgleiledlp....dvdtvivPvGGGGLisGvasavkklnpevkviGveaeaa 186
                 + +  kle l    s k r a   +++++++   + ++ v+  ++Gn   G a+     g + + vm +   +++ +   ++GaeviL             G+d+   +    +l  e+g+   + f+ e  v a     g e++ ++      +d  +  vG GG  +Gv++a++    + k   ve  +a
  MMETSP1137-20121227|1869_1  41 GSIVSKLEYLSPGFSKKDRIARQMVEEALADghlQPQQTVIELTSGNTGTGLAIVCAALGHPFVAVMSRGNSMERARMMSALGAEVILveqcegsvpgqvSGDDLQRVFDETAKLVVERGAFRADQFELEgNVRAHLEHTGPELISQVKgagmRLDAFVDFVGSGGTFAGVSAALRAAWVHAKCYVVEPAGA 232
                 567889999999999999999999999999833345899************************************************9554433332222244455555555666667777777777744245555555555666654322227999999**************999988888877776555 PP

  == domain 2    score: -0.5 bits;  conditional E-value: 0.34
   TIGR01127 229 DevvavdeeeiakaillLlera.kivaegaGavgvaavleekvd.vkgkkvavvvs 282
                 D  ++v+ ee  + + +Ll ++  i    +G + vaa  +   d  kg +va +++
  MMETSP1137-20121227|1869_1 270 DGYIEVSSEEAIE-MCRLLAKHeGIFSGFSGGANVAAAAKLLRDpFKGGTVACLIC 324
                 5668888888665.555555550566666999999997776556677778887776 PP

>> TIGR01747  diampropi_NH3ly: diaminopropionate ammonia-lyase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0      0.53   1.6e+02      17      41 ..      19      43 ..       5      56 .. 0.77
   2 !   18.9   0.0     4e-07   0.00012      94     147 ..      77     130 ..      56     135 .. 0.89

  Alignments for each domain:
  == domain 1    score: -1.3 bits;  conditional E-value: 0.53
   TIGR01747 17 laqyaetplaelddlaallGlkkil 41
                +   +etp ++l+ l+a++Gl   +
  MMETSP1137-20121227|1869_1 19 MHAIHETPCVNLSRLTAHIGLAGSI 43
                556789**************96443 PP

  == domain 2    score: 18.9 bits;  conditional E-value: 4e-07
   TIGR01747  94 datfvtatdGnhGrGvawaaeklGqkavvympkGsaqeraeniekeGaevtitd 147
                 + t +  t Gn G G+a     lG+  v +m +G ++era  +   Gaev++ +
  MMETSP1137-20121227|1869_1  77 QQTVIELTSGNTGTGLAIVCAALGHPFVAVMSRGNSMERARMMSALGAEVILVE 130
                 4578889*******************************************9865 PP

>> TIGR03528  2_3_DAP_am_ly: diaminopropionate ammonia-lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.0      0.11        32      35      60 ..      18      43 ..       4      52 .. 0.79
   2 !   17.0   0.0   1.3e-06   0.00037     114     166 ..      78     130 ..      56     135 .. 0.89

  Alignments for each domain:
  == domain 1    score: 0.7 bits;  conditional E-value: 0.11
   TIGR03528 35 klpeyektPlaeldelakelGvksiy 60
                 ++  ++tP ++l +l++++G++   
  MMETSP1137-20121227|1869_1 18 AMHAIHETPCVNLSRLTAHIGLAGSI 43
                5677899**************97544 PP

  == domain 2    score: 17.0 bits;  conditional E-value: 1.3e-06
   TIGR03528 114 itfvtatdGnhGrGvawaanklgqksvvymPkGsaqerlenirkeGaeatitd 166
                  t +  t Gn G G+a     lg+  v  m +G + er+  + + Gae+++++
  MMETSP1137-20121227|1869_1  78 QTVIELTSGNTGTGLAIVCAALGHPFVAVMSRGNSMERARMMSALGAEVILVE 130
                 578889*******************************************9876 PP

>> TIGR00263  trpB: tryptophan synthase, beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.6   0.3   0.00065      0.19      86     160 ..      64     135 ..      19     242 .. 0.79
   2 !    9.6   0.0   0.00032     0.093     318     378 ..     271     331 ..     253     334 .. 0.85

  Alignments for each domain:
  == domain 1    score: 8.6 bits;  conditional E-value: 0.00065
   TIGR00263  86 algqallakrlGkkriiaetGaGqhGvatataaallglecevymGaed.verqklnvfrmellgakvvpvtsGskt 160
                 ++  al   +l  ++ + e  +G  G+  a+++a+lg   +  m + + +er +     m  lga+v+ v++ + +
  MMETSP1137-20121227|1869_1  64 MVEEALADGHLQPQQTVIELTSGNTGTGLAIVCAALGHPFVAVMSRGNsMERAR----MMSALGAEVILVEQCEGS 135
                 444556667888899999*********************999998754167765....5999******99987665 PP

  == domain 2    score: 9.6 bits;  conditional E-value: 0.00032
   TIGR00263 318 eyeaitdeealealkllskeeGiipalesshalaaleklapklkkdeivvvnlsGrGdkdl 378
                  y +++ eea+e  +ll+k+eGi + +     +aa+ kl  +  k  +v + ++  G k l
  MMETSP1137-20121227|1869_1 271 GYIEVSSEEAIEMCRLLAKHEGIFSGFSGGANVAAAAKLLRDPFKGGTVACLICDSGLKYL 331
                 58899************************************99999999999998887765 PP

>> TIGR01275  ACC_deam_rel: pyridoxal phosphate-dependent enzymes, D-cysteine desulfhydrase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.0       4.2   1.2e+03      34      47 ..      37      50 ..      34      52 .. 0.84
   2 ?   -3.7   0.0       4.1   1.2e+03     176     202 ..      73      99 ..      61     113 .. 0.70
   3 !   17.4   0.0   1.6e-06   0.00047     166     276 ..     183     294 ..     171     320 .. 0.77

  Alignments for each domain:
  == domain 1    score: -3.7 bits;  conditional E-value: 4.2
   TIGR01275 34 lelsGnkirkLefL 47
                ++l+G  + kLe+L
  MMETSP1137-20121227|1869_1 37 IGLAGSIVSKLEYL 50
                67899999*****9 PP

  == domain 2    score: -3.7 bits;  conditional E-value: 4.1
   TIGR01275 176 evkfdsivvaaGsgGtiaGlslGlsaL 202
                 +++ ++ v+   sg t  Gl++   aL
  MMETSP1137-20121227|1869_1  73 HLQPQQTVIELTSGNTGTGLAIVCAAL 99 
                 566667788888888888888766555 PP

  == domain 3    score: 17.4 bits;  conditional E-value: 1.6e-06
   TIGR01275 166 eiaeqlnlesevkfdsivvaaGsgGtiaGlslGlsaLkeeve..svgvavsrfsaddsdklvnlvkeileelevkvnseeivelddykgkgya.vptseeleivkkvasleGii 276
                 e+ +q++    +++d+ v  +GsgGt+aG+s+ l a   + +   v+ a  ++ + + d l +l  + +++ + +   +     +    +gy  v ++e +e+ + +a+ eGi 
  MMETSP1137-20121227|1869_1 183 ELISQVKGA-GMRLDAFVDFVGSGGTFAGVSAALRAAWVHAKcyVVEPAGAAVLSGRNDALSGLAPHKIQGGGYG-MPRLSALAHAGPPDGYIeVSSEEAIEMCRLLAKHEGIF 294
                 556674444.599********************998777766324544444444778899999999999998888.4455556666677789614556678***********96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (336 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       175  (0.0426621); expected 82.0 (0.02)
Passed bias filter:                      154  (0.0375427); expected 82.0 (0.02)
Passed Vit filter:                        31  (0.00755729); expected 4.1 (0.001)
Passed Fwd filter:                        14  (0.00341297); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.47u 0.19s 00:00:00.65 Elapsed: 00:00:00.56
# Mc/sec: 778.04
//
Query:       MMETSP1137-20121227|1870_1  [L=139]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (139 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        85  (0.0207216); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.14s 00:00:00.31 Elapsed: 00:00:00.31
# Mc/sec: 591.82
//
Query:       MMETSP1137-20121227|1871_1  [L=171]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (171 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        39  (0.00950756); expected 82.0 (0.02)
Passed bias filter:                       35  (0.00853242); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.14s 00:00:00.30 Elapsed: 00:00:00.28
# Mc/sec: 778.28
//
Query:       MMETSP1137-20121227|1872_1  [L=316]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (316 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        52  (0.0126767); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.19s 00:00:00.40 Elapsed: 00:00:00.62
# Mc/sec: 672.72
//
Query:       MMETSP1137-20121227|1873_1  [L=173]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (173 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        56  (0.0136519); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.20s 00:00:00.35 Elapsed: 00:00:00.26
# Mc/sec: 878.24
//
Query:       MMETSP1137-20121227|1874_1  [L=124]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (124 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        76  (0.0185275); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.20s 00:00:00.33 Elapsed: 00:00:00.32
# Mc/sec: 511.46
//
Query:       MMETSP1137-20121227|1875_1  [L=474]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      0.001   16.4   0.0     0.0022   15.3   0.0    1.5  1  TIGR03695 menH_SHCHC: 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase
     0.0038   14.5   5.1     0.0081   13.4   3.4    1.5  1  TIGR02427 protocat_pcaD: 3-oxoadipate enol-lactonase


Domain annotation for each model (and alignments):
>> TIGR03695  menH_SHCHC: 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   1.1e-06    0.0022      70     206 ..     199     333 ..     164     335 .. 0.80

  Alignments for each domain:
  == domain 1    score: 15.3 bits;  conditional E-value: 1.1e-06
   TIGR03695  70 iekviLvGYSlGGRialalaleaperleglilesaspGLes.eeeraeRlknDeqlAkrleeegleafledWeqlplFasqkelseeqrkaliekRlanngeelakaLratglgkqpslweklkelklpvlylvGekD 206
                  e+++L+G+S GG  al+l+l+a  rl g++ + +++  es ++++aeRl++  ++A+  ++++ ++ ++  + ++  ++ +++  ++ +++ +  +a + ++ a++ ++  +++ +         + p+l+++Ge+D
  MMETSP1137-20121227|1875_1 199 PEQIFLFGFSQGGTAALDLMLHAGARLGGVVSVCGHLLPESlAHAQAERLRRSVAVANASTTATTATTVATTSTIATTSTSTSTCTSTSTTIASTTSADSTSAAAASTTGAATAAXAIGGA---CAHTPTLIIAGERD 333
                 5899***************************9999985444257789999999******99999999999999999999988888888888888888888888777766666666554333...34568888888888 PP

>> TIGR02427  protocat_pcaD: 3-oxoadipate enol-lactonase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   3.4   3.9e-06    0.0081      79     216 ..     200     345 ..     182     361 .. 0.66

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 3.9e-06
   TIGR02427  79 ekaavcGlSlGGliaqaLaarrpdrvealvlsnta...akigtaesWe.aRiaavraeGlaaladavlerwFtpafreaepaelelvrnmlveqppegYaatcaAirdadlrerleei.....avPtlviaGdeDgstPpelvreia 216
                 e++ ++G S GG  a+ L ++++ r+  +v ++     + + +a+    +R  av++  ++a + ++++   t a +++++++++ +  +++++  +  ++++aA  ++   +++ +i     + Ptl+iaG+ D++tP +l r++ 
  MMETSP1137-20121227|1875_1 200 EQIFLFGFSQGGTAALDLMLHAGARLGGVVSVCGHllpESLAHAQAERlRRSVAVANASTTATTATTVATTSTIATTSTSTSTCTSTSTTIASTTSADSTSAAAA-STTGAATAAXAIggacaHTPTLIIAGERDAVTPLDLSRRLF 345
                 567789*********************999888641113343333332134445666667777777777777777777777776666666665544333322222.2222222222222222278****************999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (474 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       234  (0.0570453); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                        21  (0.00511945); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.16s 00:00:00.55 Elapsed: 00:00:00.50
# Mc/sec: 1251.26
//
Query:       MMETSP1137-20121227|1876_1  [L=516]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.1e-17   60.9   1.5    1.8e-11   41.9   0.1    2.2  2  TIGR00393 kpsF: sugar isomerase, KpsF/GutQ family
    5.2e-10   36.6   0.4    6.6e-07   26.3   0.0    2.6  3  TIGR01302 IMP_dehydrog: inosine-5'-monophosphate dehydrogenase
    0.00023   17.9   0.1    0.00054   16.6   0.0    1.6  2  TIGR00400 mgtE: magnesium transporter


Domain annotation for each model (and alignments):
>> TIGR00393  kpsF: sugar isomerase, KpsF/GutQ family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.9   0.1   1.3e-14   1.8e-11     172     267 ..      19     115 ..       5     116 .. 0.89
   2 !   18.1   0.1   2.6e-07   0.00035     148     267 ..     161     286 ..     138     287 .. 0.76

  Alignments for each domain:
  == domain 1    score: 41.9 bits;  conditional E-value: 1.3e-14
   TIGR00393 172 taslkdallelsekrlGlavvvdeneqlkGvltdGdl.rr.allgggalkkevkdvmtlggktlksdallveakellkkrkitslvvvddenkllGvl 267
                  +++ +a  + s+ ++  ++++d + +l G+ltd d+  r ++ g + ++ +v dvmt +++ ++s++ +vea+  + ++  + l+v dd+++++Gvl
  MMETSP1137-20121227|1876_1  19 FCTVCEAAKKCSKAHVDAVLICD-DGKLMGILTDTDVlARvIAKGLDPKEVKVCDVMTREPTCVRSGEDAVEALCTMVSHAFRHLPVLDDNGRIIGVL 115
                 566777888889999999****9.7899********843558889999*************************************************8 PP

  == domain 2    score: 18.1 bits;  conditional E-value: 2.6e-07
   TIGR00393 148 alGrkllvkvkdllqtddlPlvaktaslkdallelsekrlGlavv....vdeneqlkGvltdGdl.rr.allgggalkkevkdvmtlggktlksdallveakellkkrkitslvvvddenkllGvl 267
                 a  r++l  +   l    + +v+ + +  d   +l   r G ++v     d+++   G++t  d+  r ++ g +a ++ v  +mt+++  ++++a +++a++ ++    + ++v +   + +Gvl
  MMETSP1137-20121227|1876_1 161 AHARQMLDALVSKLFAPPIAQVLSSRDGADRQAVLMAARQGAVLVgaaaEDDAHACAGIVTSRDVlHRvVAKGLDATRTRVDTIMTTEPDCMEEEATVLQALHQMQYGGYRHVPVLNTAREPTGVL 286
                 55555555544445555577777777777766777777777766632225788999********84456888999*******************************99999999999988888887 PP

>> TIGR01302  IMP_dehydrog: inosine-5'-monophosphate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.3   0.0   4.9e-10   6.6e-07      90     194 ..      13     118 ..       2     172 .. 0.76
   2 !    7.6   0.0   0.00023      0.32     121     193 ..     211     288 ..     189     311 .. 0.66
   3 ?   -2.2   0.0      0.23   3.1e+02     177     224 ..     417     464 ..     403     472 .. 0.77

  Alignments for each domain:
  == domain 1    score: 26.3 bits;  conditional E-value: 4.9e-10
   TIGR01302  90 pvtvsPettvedvlelkekkgisgvpvvedgkeegklvGivtkkdlrf......vkdkskkvsevmtkeevitvkeeidleeaeevleekkieklpvvdkegelvglvtvk 194
                 + ++ P  tv ++ +  +k ++++v++ +d    gkl+Gi+t++d+        +  k+ kv +vmt +e ++v+ + d+ ea   + ++   +lpv+d++g+++g++ ++
  MMETSP1137-20121227|1876_1  13 ALVIDPFCTVCEAAKKCSKAHVDAVLICDD----GKLMGILTDTDVLArviakgLDPKEVKVCDVMT-REPTCVRSGEDAVEALCTMVSHAFRHLPVLDDNGRIIGVLDIT 118
                 5678899999999999999*********99....799******99854111111334667899****.88999*********************************97543 PP

  == domain 2    score: 7.6 bits;  conditional E-value: 0.00023
   TIGR01302 121 keegklvGivtkkdlrf......vkdkskkvsevmtkeevitvkeeidleeaeevleekkieklpvvdkegelvglvtv 193
                 ++     Givt++d+ +      +  + ++v+++mt +e  +++ee ++ +a + ++   + ++pv++   e  g++ v
  MMETSP1137-20121227|1876_1 211 DDAHACAGIVTSRDVLHrvvakgLDATRTRVDTIMT-TEPDCMEEEATVLQALHQMQYGGYRHVPVLNTAREPTGVLDV 288
                 2333789*******9752111112334556777777.666667777777777777888888899999998887776654 PP

  == domain 3    score: -2.2 bits;  conditional E-value: 0.23
   TIGR01302 177 klpvvdkegelvglvtvkdiekakefpkaskdeegrlivgaavgtree 224
                 +l++  +++e   ++  +d + ++    a + e++rl+  a++g  +e
  MMETSP1137-20121227|1876_1 417 RLVLEYDDEEGDRVLVSTDAQLREAVSLAQRAEKNRLVLHATTGCASE 464
                 555555566666677788999999999999999999999999988655 PP

>> TIGR00400  mgtE: magnesium transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0     4e-07   0.00054     175     246 ..      41     119 ..      22     152 .. 0.81
   2 ?   -3.3   0.0      0.45   6.2e+02     134     158 ..     242     266 ..     227     271 .. 0.81

  Alignments for each domain:
  == domain 1    score: 16.6 bits;  conditional E-value: 4e-07
   TIGR00400 175 eskrLkGvlslrdL...ilak....peekvsdimvssvvsvdavqdqeevarliqkydflavPvvdeenrlvGivtvdd 246
                 ++ +L+G+l   d+   ++ak     e+kv d+m  +   v + +d  e   ++  + f  +Pv+d+++r++G++ +  
  MMETSP1137-20121227|1876_1  41 DDGKLMGILTDTDVlarVIAKgldpKEVKVCDVMTREPTCVRSGEDAVEALCTMVSHAFRHLPVLDDNGRIIGVLDITK 119
                 4456777777666533345554433699*********************999**********************97754 PP

  == domain 2    score: -3.3 bits;  conditional E-value: 0.45
   TIGR00400 134 Grivtieyvelkedytvkkaldkir 158
                   i+t+e   ++e+ tv +al +++
  MMETSP1137-20121227|1876_1 242 DTIMTTEPDCMEEEATVLQALHQMQ 266
                 5799999999999999999998875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (516 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       229  (0.0558264); expected 82.0 (0.02)
Passed bias filter:                      108  (0.0263286); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.38u 0.18s 00:00:00.56 Elapsed: 00:00:00.46
# Mc/sec: 1480.57
//
Query:       MMETSP1137-20121227|1877_1  [L=78]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0055   14.2   0.2     0.0059   14.1   0.1    1.1  1  TIGR03084 TIGR03084: TIGR03084 family protein
  ------ inclusion threshold ------
      0.022   12.2   0.0      0.026   12.0   0.0    1.1  1  TIGR03340 phn_DUF6: phosphonate utilization associated putative membrane protein


Domain annotation for each model (and alignments):
>> TIGR03084  TIGR03084: TIGR03084 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.1   2.9e-06    0.0059      40      73 ..      24      57 ..      15      74 .. 0.81

  Alignments for each domain:
  == domain 1    score: 14.1 bits;  conditional E-value: 2.9e-06
   TIGR03084 40 qiaHlaffdeaaelaltdeaefkalvaeaaedgd 73
                 + Hl ++d+aa +a++dea  +al+++  ++g+
  MMETSP1137-20121227|1877_1 24 SLQHLDWVDHAAAKAAADEASCSALLRTRRRRGA 57
                689*******************999988777643 PP

>> TIGR03340  phn_DUF6: phosphonate utilization associated putative membrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   1.2e-05     0.026      98     126 ..       8      36 ..       6      75 .. 0.65

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 1.2e-05
   TIGR03340  98 slPvlvaiaatlllgeeLsalaWlGilli 126
                 ++Pvlva aatl l  +L+ l W+  +  
  MMETSP1137-20121227|1877_1   8 GIPVLVACAATLCLHPSLQHLDWVDHAAA 36 
                 79*********************976544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (78 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        87  (0.0212092); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.32
# Mc/sec: 321.72
//
Query:       MMETSP1137-20121227|1878_1  [L=237]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (237 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        55  (0.0134081); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.17s 00:00:00.38 Elapsed: 00:00:00.28
# Mc/sec: 1117.19
//
Query:       MMETSP1137-20121227|1879_1  [L=112]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (112 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        99  (0.0241346); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.14s 00:00:00.29 Elapsed: 00:00:00.36
# Mc/sec: 410.63
//
Query:       MMETSP1137-20121227|1880_1  [L=154]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (154 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        70  (0.0170648); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.17s 00:00:00.35 Elapsed: 00:00:00.78
# Mc/sec: 260.59
//
Query:       MMETSP1137-20121227|1881_1  [L=98]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.8e-17   59.9   3.3      7e-17   59.7   2.3    1.0  1  TIGR02349 DnaJ_bact: chaperone protein DnaJ
    1.8e-10   37.7   2.7      2e-10   37.6   1.9    1.0  1  TIGR03835 termin_org_DnaJ: terminal organelle assembly protein TopJ
     0.0034   15.3   0.0     0.0045   15.0   0.0    1.1  1  TIGR00714 hscB: Fe-S protein assembly co-chaperone HscB


Domain annotation for each model (and alignments):
>> TIGR02349  DnaJ_bact: chaperone protein DnaJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.7   2.3   5.1e-20     7e-17       1      46 [.       8      54 ..       8      59 .. 0.92

  Alignments for each domain:
  == domain 1    score: 59.7 bits;  conditional E-value: 5.1e-20
   TIGR02349  1 dYYeiLgvskdAseeeikkAYrklakkyHPDrnkgeke.aeekfkei 46
                dYY++Lgv+k+A+e+ei kAY+kla kyHPD+n+++ke aee fk+ 
  MMETSP1137-20121227|1881_1  8 DYYKLLGVNKNATEAEINKAYKKLAVKYHPDKNPENKEmAEENFKKA 54
                9*********************************9665499***985 PP

>> TIGR03835  termin_org_DnaJ: terminal organelle assembly protein TopJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.6   1.9   1.4e-13     2e-10       3      43 ..       8      50 ..       6      61 .. 0.86

  Alignments for each domain:
  == domain 1    score: 37.6 bits;  conditional E-value: 1.4e-13
   TIGR03835  3 DyyevLgidrDadeqeikkafrkLakkyhPDrnka..adaaki 43
                Dyy  Lg++++a e ei ka++kLa kyhPD+n +    a++ 
  MMETSP1137-20121227|1881_1  8 DYYKLLGVNKNATEAEINKAYKKLAVKYHPDKNPEnkEMAEEN 50
                9*******************************97632445555 PP

>> TIGR00714  hscB: Fe-S protein assembly co-chaperone HscB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   3.3e-06    0.0045       6      42 ..      22      59 ..      18      63 .. 0.66

  Alignments for each domain:
  == domain 1    score: 15.0 bits;  conditional E-value: 3.3e-06
   TIGR00714  6 kaLrkryrklQkqyHPD.vsksaqeqaaalqqStelNq 42
                  ++k y+kl ++yHPD   +++     + ++ + + +
  MMETSP1137-20121227|1881_1 22 AEINKAYKKLAVKYHPDkNPENKEMAEENFKKAAIIAK 59
                5689*************522333223346666665555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (98 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       175  (0.0426621); expected 82.0 (0.02)
Passed bias filter:                      163  (0.0397367); expected 82.0 (0.02)
Passed Vit filter:                        19  (0.00463189); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.16u 0.13s 00:00:00.29 Elapsed: 00:00:00.30
# Mc/sec: 431.16
//
Query:       MMETSP1137-20121227|1882_1  [L=673]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.8e-49  166.6   0.1    2.6e-49  166.1   0.0    1.2  1  TIGR01357 aroB: 3-dehydroquinate synthase


Domain annotation for each model (and alignments):
>> TIGR01357  aroB: 3-dehydroquinate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  166.1   0.0   6.3e-53   2.6e-49      58     331 ..     308     586 ..     241     599 .. 0.84

  Alignments for each domain:
  == domain 1    score: 166.1 bits;  conditional E-value: 6.3e-53
   TIGR01357  58 dgeesKsletvaklldqlleeklerksvlvaiGGGvvgDlaGFvAatylRGirlvqvPTtllamvDssvGGKtginlplgkNliGafyqPkaVlidlkvletlperelreGmaEviKhgliadaelfeeleknekl..llklaelealeelikrsievKaevVeeDekesglRalLNfGHtlgHaiEallkyk....lsHGeaVaiGmvveaklseklgllkaellerlvallkklglptklkkklsveellkallkDKKnegskiklvlleeiGkaala 331
                 + e++K+++++++l+d++l++++++ s+++++GGG++gD+aG +A+t + Gi+lv++ Tt ++++D+++  ++gin++ g+ liG+ +  +aV+id++++++l++r++ +G+a ++K g+ + +e +e +++   +     l ++  le + k sie+K    ++  +     ++  +GH++g aiE l+  +    + HGea aiGm + a++s  +gl++ e +e++   l+++glpt +++ ls+  ++ ++++D+  + sk  + l  ++G+ a +
  MMETSP1137-20121227|1882_1 308 STEQVKNRHMISDLEDEILHQGASKASCIISLGGGAIGDVAGMLASTIYHGIALVHLTTTTMGALDAAIDTRNGINHAYGRDLIGTHWPATAVVIDPTTFSSLSQRHVLNGLAMALKRGFCQSREHLEMITRPVIDkgAALLRDQTYLEMVCKASIEIKLPTLSHYVQTDYNDMCQYYGHAVGNAIEHLSYAQnqtpVLHGEALAIGMCISAEISLLMGLCSDETVESHYFHLHAVGLPTFVPPGLSARDVVGTMTRDRF-RTSKPVMGLCAAVGRLARN 586
                 469*************************************************************************************************************************99999987643322222345688999999******876555555555556678**********9876666789*************************************************************75.5667777888888877665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (673 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       132  (0.0321794); expected 82.0 (0.02)
Passed bias filter:                      105  (0.0255973); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.14s 00:00:00.60 Elapsed: 00:00:00.62
# Mc/sec: 1432.72
//
Query:       MMETSP1137-20121227|1883_1  [L=717]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (717 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       129  (0.0314481); expected 82.0 (0.02)
Passed bias filter:                       42  (0.0102389); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.15s 00:00:00.57 Elapsed: 00:00:00.47
# Mc/sec: 2013.54
//
Query:       MMETSP1137-20121227|1884_1  [L=479]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (479 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        66  (0.0160897); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.15s 00:00:00.50 Elapsed: 00:00:00.31
# Mc/sec: 2039.44
//
Query:       MMETSP1137-20121227|1885_1  [L=30]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (30 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        19  (0.00463189); expected 82.0 (0.02)
Passed bias filter:                       19  (0.00463189); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.16s 00:00:00.27 Elapsed: 00:00:00.25
# Mc/sec: 158.39
//
Query:       MMETSP1137-20121227|1886_1  [L=654]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.012   13.3   4.5      0.016   12.9   1.7    2.2  2  TIGR03726 strep_RK_lipo: putative cross-wall-targeting lipoprotein signal


Domain annotation for each model (and alignments):
>> TIGR03726  strep_RK_lipo: putative cross-wall-targeting lipoprotein signal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0      0.12   4.8e+02      22      33 ..       8      19 ..       6      19 .. 0.80
   2 ?   12.9   1.7   3.8e-06     0.016      10      27 ..     584     601 ..     580     605 .. 0.86

  Alignments for each domain:
  == domain 1    score: -1.4 bits;  conditional E-value: 0.12
   TIGR03726 22 taavaGtqVsAD 33
                t +++G ++sAD
  MMETSP1137-20121227|1886_1  8 TIVAVGRKASAD 19
                5667799****9 PP

  == domain 2    score: 12.9 bits;  conditional E-value: 3.8e-06
   TIGR03726  10 rtLCGavLgTtvtaavaG 27 
                 ++LCG+v g+++ta+va 
  MMETSP1137-20121227|1886_1 584 ALLCGIVIGAAATALVAA 601
                 79**************94 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (654 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       109  (0.0265724); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.16s 00:00:00.59 Elapsed: 00:00:00.77
# Mc/sec: 1121.05
//
Query:       MMETSP1137-20121227|1887_1  [L=411]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (411 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       176  (0.0429059); expected 82.0 (0.02)
Passed bias filter:                      139  (0.0338859); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.17s 00:00:00.50 Elapsed: 00:00:00.43
# Mc/sec: 1261.57
//
Query:       MMETSP1137-20121227|1888_1  [L=192]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (192 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       143  (0.034861); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.13s 00:00:00.32 Elapsed: 00:00:00.31
# Mc/sec: 817.48
//
Query:       MMETSP1137-20121227|1889_1  [L=120]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (120 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       145  (0.0353486); expected 82.0 (0.02)
Passed bias filter:                      136  (0.0331546); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.13s 00:00:00.28 Elapsed: 00:00:00.37
# Mc/sec: 428.07
//
Query:       MMETSP1137-20121227|1890_1  [L=382]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      5e-12   43.3   1.6    6.8e-08   29.7   0.2    2.2  2  TIGR02053 MerA: mercuric reductase
    9.8e-12   42.1   0.2    6.8e-09   32.7   0.1    2.1  2  TIGR01350 lipoamide_DH: dihydrolipoyl dehydrogenase
    8.8e-06   22.7   0.0    1.2e-05   22.2   0.0    1.2  1  TIGR03452 mycothione_red: mycothione reductase
    0.00037   17.2   0.1    0.00057   16.6   0.1    1.2  1  TIGR01316 gltA: glutamate synthase (NADPH), homotetrameric
     0.0027   14.4   0.1      0.004   13.8   0.0    1.2  1  TIGR01292 TRX_reduct: thioredoxin-disulfide reductase
     0.0076   13.3   0.0      0.011   12.8   0.0    1.2  1  TIGR01421 gluta_reduc_1: glutathione-disulfide reductase
     0.0079   12.6   0.0      0.011   12.1   0.0    1.1  1  TIGR03140 AhpF: alkyl hydroperoxide reductase, F subunit
     0.0096   12.5   0.0      0.013   12.1   0.0    1.2  1  TIGR03385 CoA_CoA_reduc: CoA-disulfide reductase


Domain annotation for each model (and alignments):
>> TIGR02053  MerA: mercuric reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.7   0.2   1.3e-10   6.8e-08     279     362 ..       2      92 ..       1      99 [. 0.74
   2 !   12.8   0.0   1.8e-05    0.0092     403     452 ..     154     203 ..     130     214 .. 0.89

  Alignments for each domain:
  == domain 1    score: 29.7 bits;  conditional E-value: 1.3e-10
   TIGR02053 279 gvklderGeilvdeklrtsnpkiyAAGDvikglq...lesvAa.....keGvvaAenalggaeakldlevlPkvvFtdPevAsvGlteeela 362
                 gv+++ +G++ vd++l+t + ++yAAGD+++        ++A+      +G  + + a   a    d    P  ++t Pe+A vG+t +++a
  MMETSP1137-20121227|1890_1   2 GVQVKPNGDVAVDDRLQTAAEGVYAAGDIVGXAAarvHWHLAGgdamfSDGKTVQKSASP-AALLADAARYPIGIWTIPEIAFVGVTASHAA 92 
                 99****************************986544433455511111344444444444.45566888899999999*******9988776 PP

  == domain 2    score: 12.8 bits;  conditional E-value: 1.8e-05
   TIGR02053 403 lgvqvvaeeAaevineaalaikagltvddlidtlhvfltmaEglklAAla 452
                 + v++++ +A e+++  +  ++ + t+ d+   +    t+ E  klAAl 
  MMETSP1137-20121227|1890_1 154 APVHIFGTDACELVHYGTTLVQERKTLADVLAVCYAAVTYHELFKLAALD 203
                 569*********************************************85 PP

>> TIGR01350  lipoamide_DH: dihydrolipoyl dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.7   0.1   1.3e-11   6.8e-09     280     365 ..       2      94 ..       1     111 [. 0.83
   2 !    7.5   0.0   0.00059       0.3     406     457 ..     156     207 ..     136     210 .. 0.95

  Alignments for each domain:
  == domain 1    score: 32.7 bits;  conditional E-value: 1.3e-11
   TIGR01350 280 gveldergaikvdeelrtnvpgiyaiGDvigklm...LAhvAskegvvaaekiagkeks....eidykavPsviytePevasvGlteeqakee 365
                 gv+++ +g + vd++l+t ++g+ya GD++g +      h A  +++ +  k ++k++s     +d+   P  i+t Pe+a vG+t ++a + 
  MMETSP1137-20121227|1890_1   2 GVQVKPNGDVAVDDRLQTAAEGVYAAGDIVGXAAarvHWHLAGGDAMFSDGKTVQKSASpaalLADAARYPIGIWTIPEIAFVGVTASHAAQM 94 
                 899999***********************9976511135778888888777777777667777899********************9998765 PP

  == domain 2    score: 7.5 bits;  conditional E-value: 0.00059
   TIGR01350 406 ahivgaeaseliselalaveleltveelaktihpHPtlsEaikeaalaalgk 457
                 +hi g++a el++  + +v+ + t+ ++ +++++  t+ E +k aal+al++
  MMETSP1137-20121227|1890_1 156 VHIFGTDACELVHYGTTLVQERKTLADVLAVCYAAVTYHELFKLAALDALDE 207
                 79********************************************999875 PP

>> TIGR03452  mycothione_red: mycothione reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.2   0.0   2.4e-08   1.2e-05     276     361 ..       2      93 ..       1     109 [. 0.79

  Alignments for each domain:
  == domain 1    score: 22.2 bits;  conditional E-value: 2.4e-08
   TIGR03452 276 GvevdedgrvkvdeyqrtsaegvfalGdvsspyqlk...hvanaearvvkhnllkd....edlkkadhdfvpaavftdpqiatvGlteqeare 361
                 Gv+v+ +g v vd+  +t+aegv+a Gd+      +   h+a  +a       +++    ++l  ad    p +++t p ia vG+t ++a +
  MMETSP1137-20121227|1890_1   2 GVQVKPNGDVAVDDRLQTAAEGVYAAGDIVGXAAARvhwHLAGGDAMFSDGKTVQKsaspAAL-LADAARYPIGIWTIPEIAFVGVTASHAAQ 93 
                 99**************************97655433334999988876665555553432444.4677788****************999976 PP

>> TIGR01316  gltA: glutamate synthase (NADPH), homotetrameric
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.1   1.1e-06   0.00057     397     436 ..       3      43 ..       1      51 [. 0.80

  Alignments for each domain:
  == domain 1    score: 16.6 bits;  conditional E-value: 1.1e-06
   TIGR01316 397 lktskrGtivvdedletsieGvfaGGdvirGea.tvilalg 436
                 ++++++G + vd++l+t+ eGv+a Gd++  +a +v   l+
  MMETSP1137-20121227|1890_1   3 VQVKPNGDVAVDDRLQTAAEGVYAAGDIVGXAAaRVHWHLA 43 
                 78999************************765415555555 PP

>> TIGR01292  TRX_reduct: thioredoxin-disulfide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.0   7.7e-06     0.004     248     279 ..       4      35 ..       1      49 [. 0.84

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 7.7e-06
   TIGR01292 248 eldeegyivvdeemrTsveGvfaaGDvrdksl 279
                 +++ +g + vd++ +T  eGv+aaGD+   + 
  MMETSP1137-20121227|1890_1   4 QVKPNGDVAVDDRLQTAAEGVYAAGDIVGXAA 35 
                 6778999********************97655 PP

>> TIGR01421  gluta_reduc_1: glutathione-disulfide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.8   0.0   2.1e-05     0.011     276     359 ..       2      91 ..       1      95 [. 0.70

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 2.1e-05
   TIGR01421 276 gvkldekgyikvdeyqntnvegiyalGdvvGkvelt.PvaiaaGrkl.serlfegk....edakldyenvPtvvfshPeigtvGltekea 359
                 gv+++ +g + vd+   t+ eg+ya Gd+vG +       +a G  + s+    +k         d    P  +++ Pei+ vG+t  +a
  MMETSP1137-20121227|1890_1   2 GVQVKPNGDVAVDDRLQTAAEGVYAAGDIVGXAAARvHWHLAGGDAMfSDGKTVQKsaspAALLADAARYPIGIWTIPEIAFVGVTASHA 91 
                 7999999************************98654144555555442433322222322333458888888888888888888887776 PP

>> TIGR03140  AhpF: alkyl hydroperoxide reductase, F subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.1   0.0   2.1e-05     0.011     459     487 ..       3      31 ..       1      45 [. 0.89

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 2.1e-05
   TIGR03140 459 velnrrGeividergrtsvkGifaaGdvt 487
                 v+++  G++ +d r +t ++G++aaGd+ 
  MMETSP1137-20121227|1890_1   3 VQVKPNGDVAVDDRLQTAAEGVYAAGDIV 31 
                 677789*********************86 PP

>> TIGR03385  CoA_CoA_reduc: CoA-disulfide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.1   0.0   2.6e-05     0.013     254     285 ..       2      33 ..       1      41 [. 0.88

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 2.6e-05
   TIGR03385 254 qlklgkkGaikvnekfqtsveniyaiGDvaes 285
                 +++++ +G + v++++qt+ e +ya+GD++  
  MMETSP1137-20121227|1890_1   2 GVQVKPNGDVAVDDRLQTAAEGVYAAGDIVGX 33 
                 588999**********************9865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (382 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        95  (0.0231594); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                        19  (0.00463189); expected 4.1 (0.001)
Passed Fwd filter:                         8  (0.00195027); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.33u 0.18s 00:00:00.51 Elapsed: 00:00:00.49
# Mc/sec: 1028.98
//
Query:       MMETSP1137-20121227|1891_1  [L=681]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.4e-19   65.1   0.1    8.7e-19   64.7   0.1    1.1  1  TIGR03903 TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
    4.2e-05   20.9   0.0    7.6e-05   20.1   0.0    1.3  1  TIGR03724 arch_bud32: Kae1-associated kinase Bud32
      0.005   13.3   0.0     0.0075   12.7   0.0    1.2  1  TIGR01982 UbiB: 2-polyprenylphenol 6-hydroxylase


Domain annotation for each model (and alignments):
>> TIGR03903  TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.7   0.1   6.4e-22   8.7e-19       5     200 ..     228     427 ..     224     470 .. 0.77

  Alignments for each domain:
  == domain 1    score: 64.7 bits;  conditional E-value: 6.4e-22
   TIGR03903   5 kvaikllRedaa...eeerl..vaRFrReialCarL.shPnivaLlDsGeaedgllFavFeyveGrtlrevL..aadGaLpaaetgrLmlqvLDalaaahdaGvvhRDLkPqnimvsaadveshakvLDFGigaLlpgvedadeatltrttevlGsPaYaaPeqLRg...epvt......aksDlYaWGLivleCLtGkrvvqGasvaevlyk 200
                   a+k++R+  +   e+++l  +     e+ + + L  h +iv+++D  + ed   + v   v+G  l e L  + +G Lp+a   rLm+q L al +ah +G +h D+kPqni +  +   + a + D+G +              t++t   G+PaYa PeqL g   e+vt      ++ D++a G+     L G    +  s  e++  
  MMETSP1137-20121227|1891_1 228 SLAVKMIRKGRSevgEQQQLgdMEQLXWEVHVLQSLgAHKHIVRVMDVVDLED-ATYIVMQRVDGPELLEFLemQPEGKLPPAVAQRLMVQLLSALDHAHGRGFLHCDIKPQNIRLEST--CQMAVLTDWGFAQ----------RIGTLATVCQGTPAYAPPEQLTGycsESVTgrrplcPAVDIWALGVTCYQMLCGCLPFEASSFDELVCA 427
                 67899999887766533333226788899999999967*************99.99**************9833568*************************************99765..5789999*99753..........3347788899***********975556666333333677888888888888888777777777666655 PP

>> TIGR03724  arch_bud32: Kae1-associated kinase Bud32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.0   5.6e-08   7.6e-05      55     138 ..     266     359 ..     250     366 .. 0.81

  Alignments for each domain:
  == domain 1    score: 20.1 bits;  conditional E-value: 5.6e-08
   TIGR03724  55 kkagvntPvvydvdpeekkivmeyiegkklkdlleekel.........ellkevGelvgklHkagivhgDlttsNiivk..ddklyliDfGLgkk 138
                 +k+ v++  v+d+++  + ivm++++g +l + le + +         +l+ ++  ++ + H  g++h D+ ++Ni+++   + ++l D G +++
  MMETSP1137-20121227|1891_1 266 HKHIVRVMDVVDLEDA-TYIVMQRVDGPELLEFLEMQPEgklppavaqRLMVQLLSALDHAHGRGFLHCDIKPQNIRLEstCQMAVLTDWGFAQR 359
                 5555666667777665.89***************998878899998888888889999999*****************62246678899999875 PP

>> TIGR01982  UbiB: 2-polyprenylphenol 6-hydroxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.7   0.0   5.5e-06    0.0075     233     306 ..     283     360 ..     256     366 .. 0.85

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 5.5e-06
   TIGR01982 233 vltlewidgipvsdleklkeaGldlkalaenlvesf...lkqvlrdgfFHaDlHpGNilvakdgkiial.DfGivgrl 306
                  ++++++dg ++ ++ +++ +G  + a+a++l+  +   l ++   gf H D+ p Ni +++  ++++l D G   r+
  MMETSP1137-20121227|1891_1 283 YIVMQRVDGPELLEFLEMQPEGKLPPAVAQRLMVQLlsaLDHAHGRGFLHCDIKPQNIRLESTCQMAVLtDWGFAQRI 360
                 689****************************988661225688999****************9998876588877665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (681 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       112  (0.0273038); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.48u 0.18s 00:00:00.65 Elapsed: 00:00:00.62
# Mc/sec: 1449.75
//
Query:       MMETSP1137-20121227|1892_1  [L=179]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (179 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.16s 00:00:00.34 Elapsed: 00:00:00.41
# Mc/sec: 576.25
//
Query:       MMETSP1137-20121227|1893_1  [L=377]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.6e-12   41.9   0.0    8.9e-12   41.5   0.0    1.0  1  TIGR03903 TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
    6.5e-05   20.3   0.0    9.7e-05   19.7   0.0    1.3  1  TIGR03724 arch_bud32: Kae1-associated kinase Bud32


Domain annotation for each model (and alignments):
>> TIGR03903  TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.5   0.0   4.4e-15   8.9e-12      26     192 ..      81     246 ..      67     252 .. 0.86

  Alignments for each domain:
  == domain 1    score: 41.5 bits;  conditional E-value: 4.4e-15
   TIGR03903  26 rReialCarLshPnivaLlD.....sGeaedgllFavFeyveGrtlrevLaadGaLpaaetgrLmlqvLDalaaahdaGvvhRDLkPqnimvsaadveshakvLDFGiga.LlpgvedadeatltrttevlGsPaYaaPeqL.RgepvtaksDlYaWGLivleCLtGkrvvqGa 192
                  Rei++  + +h ni  L+D     +G+     ++ v e+++   l  ++ ++ +L+ ++    + q+L ++ a h+  v+hRDLkP n++v ++      kv D G++  + pg+++ + + l   te++ +  Y aPe L  +e+   + D +a G i+ e L  k   qG 
  MMETSP1137-20121227|1893_1  81 XREIKILRHFKHDNILGLVDilpppEGKDSWKDVYIVSELMD-TDLHYIIHSKQPLTDEHFKYFLYQILRGVHAMHSSHVLHRDLKPGNLLVNKN---CDLKVCDXGLARpVAPGADA-KDMGL---TEYVVTRWYRAPELLvENEAYSMAIDAWAVGCILAEMLGRKALFQGR 246
                 59*****************97776678888888******997.579*********************************************9765...5679******9724555444.55554...59***********984699*******************999888885 PP

>> TIGR03724  arch_bud32: Kae1-associated kinase Bud32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.0   4.7e-08   9.7e-05      75     138 ..     116     187 ..      74     221 .. 0.84

  Alignments for each domain:
  == domain 1    score: 19.7 bits;  conditional E-value: 4.7e-08
   TIGR03724  75 vmeyiegkklkdlleekel.......ellkevGelvgklHkagivhgDlttsNiiv.kddklyliDfGLgkk 138
                 +++++ +++l++++++k+         +l+++ + v  +H+  ++h Dl + N++v k+ +l + D GL++ 
  MMETSP1137-20121227|1893_1 116 IVSELMDTDLHYIIHSKQPltdehfkYFLYQILRGVHAMHSSHVLHRDLKPGNLLVnKNCDLKVCDXGLARP 187
                 456677788888888876677777767889999***********************4477999******975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (377 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       104  (0.0253535); expected 82.0 (0.02)
Passed bias filter:                      100  (0.0243784); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.31u 0.15s 00:00:00.46 Elapsed: 00:00:00.56
# Mc/sec: 872.98
//
Query:       MMETSP1137-20121227|1894_1  [L=491]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (491 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       142  (0.0346173); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.16s 00:00:00.48 Elapsed: 00:00:00.56
# Mc/sec: 1157.26
//
Query:       MMETSP1137-20121227|1896_1  [L=209]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (209 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       286  (0.0697221); expected 82.0 (0.02)
Passed bias filter:                      104  (0.0253535); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.18s 00:00:00.37 Elapsed: 00:00:00.33
# Mc/sec: 835.93
//
Query:       MMETSP1137-20121227|1897_1  [L=249]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (249 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        81  (0.0197465); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.15s 00:00:00.36 Elapsed: 00:00:00.39
# Mc/sec: 842.70
//
Query:       MMETSP1137-20121227|1898_1  [L=422]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0081   13.5   0.6      0.027   11.8   0.0    2.0  2  TIGR03094 sulfo_cyanin: sulfocyanin
  ------ inclusion threshold ------
      0.022   11.9   0.0      0.033   11.3   0.0    1.2  1  TIGR03064 sortase_srtB: sortase, SrtB family


Domain annotation for each model (and alignments):
>> TIGR03094  sulfo_cyanin: sulfocyanin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.1      0.11   2.3e+02      29      59 ..     230     261 ..     191     263 .. 0.55
   2 !   11.8   0.0   1.3e-05     0.027       5      44 ..     337     375 ..     333     385 .. 0.79

  Alignments for each domain:
  == domain 1    score: -1.1 bits;  conditional E-value: 0.11
   TIGR03094  29 ynvlssdtsaa.stttsttssksipYnssnkt 59 
                   v + ++ aa ++++ t++  s+pY ++  t
  MMETSP1137-20121227|1898_1 230 QAVPAEESVAAaAKAAPTAAAASLPYATATTT 261
                 22222222222033334445557888766665 PP

  == domain 2    score: 11.8 bits;  conditional E-value: 1.3e-05
   TIGR03094   5 alavlvviivlivavgvavyaYkeynvlssdtsaasttts 44 
                 +l+++vv++v i++vgv   a+ +++++ ++++a  ++t 
  MMETSP1137-20121227|1898_1 337 VLPIIVVVLV-IIVVGVLCWAFCKWQMMQTEQQALCDETR 375
                 6777776665.6679*****************99887754 PP

>> TIGR03064  sortase_srtB: sortase, SrtB family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   1.6e-05     0.033       6      70 ..     340     404 ..     335     408 .. 0.76

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 1.6e-05
   TIGR03064   6 kvisllvlivilvallklilklldsaenskvldeaqqvkkkstakkseegkkvrkqfedLkaiNe 70 
                  ++ +lv+iv+ v ++      + ++e+++  de++++  ++ ++  + g+++ ++ ++L++ N+
  MMETSP1137-20121227|1898_1 340 IIVVVLVIIVVGVLCWAFCKWQMMQTEQQALCDETRAKLRRKRQQARQAGRQKGRRSRNLQKQNS 404
                 44555555666566666666666667777778********99999999999***********997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (422 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       346  (0.0843491); expected 82.0 (0.02)
Passed bias filter:                      212  (0.0516821); expected 82.0 (0.02)
Passed Vit filter:                        30  (0.00731351); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.18s 00:00:00.57 Elapsed: 00:00:00.53
# Mc/sec: 1050.93
//
Query:       MMETSP1137-20121227|1899_1  [L=75]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (75 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        66  (0.0160897); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:00.30
# Mc/sec: 329.97
//
Query:       MMETSP1137-20121227|1900_1  [L=138]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (138 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        50  (0.0121892); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.16s 00:00:00.33 Elapsed: 00:00:00.59
# Mc/sec: 308.72
//
Query:       MMETSP1137-20121227|1901_1  [L=137]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (137 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        89  (0.0216967); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.16s 00:00:00.34 Elapsed: 00:00:00.24
# Mc/sec: 753.44
//
Query:       MMETSP1137-20121227|1902_1  [L=916]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.9e-08   29.4   5.0    6.9e-08   29.4   3.4    3.2  2  TIGR02031 BchD-ChlD: magnesium chelatase ATPase subunit D
    3.3e-07   27.1   0.2    3.6e-05   20.4   0.0    2.6  3  TIGR00368 TIGR00368: Mg chelatase-like protein


Domain annotation for each model (and alignments):
>> TIGR02031  BchD-ChlD: magnesium chelatase ATPase subunit D
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   4.3     0.034        69     268     311 ..       2      57 ..       1      78 [. 0.62
   2 !   29.4   3.4   3.4e-11   6.9e-08      73     267 ..     560     790 ..     551     800 .. 0.70

  Alignments for each domain:
  == domain 1    score: -0.3 bits;  conditional E-value: 0.034
   TIGR02031 268 lpRatrleekepeqee.ppppPpPpepesegeeeedeeeeeeee...........k 311
                 +p+ +r   +++++   ++ pPpP++++s++e+++++ e++e+             
  MMETSP1137-20121227|1902_1   2 APKRSRATSNAESNATgAGGPPPPDDESSSSEQSPPPAEDAEPGtpsappsvgpaM 57 
                 56666666667777776888888887767777777777777776555555555542 PP

  == domain 2    score: 29.4 bits;  conditional E-value: 3.4e-11
   TIGR02031  73 eslasgkrvlqkgllaeanrgvlyvdelnlldeslvnrlldaldegvvivereGisvrePakfvLiatydpeeg..........eealrehllDRlali.vsleevas.learveivrl....................elaeeveee..vndelelakaqiekaRe....llkqVtise..eqvkelvleavklGveghRadl.favraAkalaAlegReeVeeeDlklAvelvl 267
                    a ++ vl  g l  a++gv ++de +++++s   ++ +a+++ +  + + Gi  + Pa+ ++ia  +p  g          +  l e +l R   + v  +e+ +  ++r+                         +++e+  +   +  ++ l+++ i  aR+    +l++V + +  ++  el  e+ ++Gv+     +   +r+A a a ++ R +V ++D+ lA+ ++l
  MMETSP1137-20121227|1902_1 560 RDSATREWVLEGGALVLADKGVCLIDEFDKMNDSDRTSIHEAMEQQTISIAKAGIKAQLPARCAVIAAANPVKGrydssvsfhdNVDLSEPILSRFDCVcVVKDEMDPiADERL----AefvvrshkrshpeavaddevQQQEDLRDAgkYI-DQALLRKYIMYARTfvrpVLRDVDVGKitQVYTELRRESQSGGVSVAVRHIeSIIRMAEASARMHLRDQVRQDDVDLAISVML 790
                 55678899***************************************************************9872211111111223344455554433122222222123443....0333347999999998887543333332221122.344455567777662222678888865325678999********97766661568***********************98765 PP

>> TIGR00368  TIGR00368: Mg chelatase-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    3.7   0.0    0.0019         4     208     236 ..     511     539 ..     479     553 .. 0.88
   2 !   20.4   0.0   1.7e-08   3.6e-05     289     355 ..     572     637 ..     561     671 .. 0.87
   3 ?   -2.0   0.0      0.11   2.2e+02     152     206 ..     754     807 ..     748     810 .. 0.72

  Alignments for each domain:
  == domain 1    score: 3.7 bits;  conditional E-value: 0.0019
   TIGR00368 208 aaGghnllllGPPGsGktllakrlqgllP 236
                 + G+ n+lllG PG+ k    k +q + P
  MMETSP1137-20121227|1902_1 511 IRGDINVLLLGDPGTAKSQFLKYVQKVSP 539
                 67999*************99999998877 PP

  == domain 2    score: 20.4 bits;  conditional E-value: 1.7e-08
   TIGR00368 289 GeislahnGvlfldellefkrkvldalrePledgeisisrakakilyParfqlvaamnpsPtGhygd 355
                 G + la +Gv ++de   ++ +   ++ e +e++ isi++a  k + Par  ++aa np   G y+ 
  MMETSP1137-20121227|1902_1 572 GALVLADKGVCLIDEFDKMNDSDRTSIHEAMEQQTISIAKAGIKAQLPARCAVIAAANPVK-GRYDS 637
                 7789******************************************************974.55554 PP

  == domain 3    score: -2.0 bits;  conditional E-value: 0.11
   TIGR00368 152 ivddlkevvkflegkeklepatetkkksavevslaltldlkdvkGqqr..akralei 206
                  v +++ ++++ e++ +++ +   ++  +++v+la++  l+ v+  q+   kr++ei
  MMETSP1137-20121227|1902_1 754 AVRHIESIIRMAEASARMHLR---DQVRQDDVDLAISVMLRSVINSQKyaVKRSMEI 807
                 577888888888888888888...445566778888888888876654335888887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (916 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       159  (0.0387616); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.63u 0.15s 00:00:00.78 Elapsed: 00:00:01.04
# Mc/sec: 1162.52
//
Query:       MMETSP1137-20121227|1903_1  [L=316]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0041   13.8   0.0     0.0055   13.4   0.0    1.1  1  TIGR00479 rumA: 23S rRNA (uracil-5-)-methyltransferase RumA
     0.0081   13.1   0.1      0.016   12.1   0.0    1.5  2  TIGR00536 hemK_fam: methyltransferase, HemK family
     0.0095   13.6   0.0      0.015   12.9   0.0    1.2  1  TIGR02072 BioC: biotin biosynthesis protein BioC
  ------ inclusion threshold ------
       0.01   13.4   0.0      0.018   12.6   0.0    1.3  1  TIGR00537 hemK_rel_arch: putative methylase
      0.018   13.2   0.0      0.028   12.5   0.0    1.3  1  TIGR02469 CbiT: precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit
      0.047   10.8   0.1      0.069   10.3   0.0    1.2  1  TIGR01983 UbiG: 3-demethylubiquinone-9 3-O-methyltransferase
       0.05   10.7   0.0      0.079   10.1   0.0    1.2  1  TIGR00755 ksgA: dimethyladenosine transferase


Domain annotation for each model (and alignments):
>> TIGR00479  rumA: 23S rRNA (uracil-5-)-methyltransferase RumA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.0   9.4e-06    0.0055     282     360 ..     196     274 ..     188     314 .. 0.78

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 9.4e-06
   TIGR00479 282 vdralealelqgeekvvDaycGvGtftlplAkqaksvvgvevvkesvekakrnAelngianveflageleevlpklske 360
                 v r l a+e+ + ++v+++ c +G  t  +  +  +++gv+    s++ a+ n      +  + ++  + + + ++  +
  MMETSP1137-20121227|1903_1 196 VYRRLAAIEVHQLDCVLEIGCDLGATTALMHARCGKAIGVDLSDSSINIARANHSAACFRQLDIFQHGAFDRMREWGLA 274
                 45667899*********************************************99999998888877777777777554 PP

>> TIGR00536  hemK_fam: methyltransferase, HemK family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.0       1.7     1e+03     149     174 ..     150     173 ..     149     174 .. 0.82
   2 !   12.1   0.0   2.7e-05     0.016     112     179 ..     206     269 ..     183     275 .. 0.77

  Alignments for each domain:
  == domain 1    score: -3.7 bits;  conditional E-value: 1.7
   TIGR00536 149 dalavaeeNaeklkleerveliqsnl 174
                  ala+++eN     l+   +++qs+l
  MMETSP1137-20121227|1903_1 150 AALALVSENRVIPMLS--GQFLQSRL 173
                 6999999999888888..68888886 PP

  == domain 2    score: 12.1 bits;  conditional E-value: 2.7e-05
   TIGR00536 112 qeplkhilDlgtGsGcIalalAleipnaeviavDistdalavaeeNaeklkleerveliqsnllesla 179
                 ++ l+ +l++g+  G+   al ++    + i+vD+s + +++a++N +  ++ +   + q+  ++ + 
  MMETSP1137-20121227|1903_1 206 HQ-LDCVLEIGCDLGATT-ALMHARC-GKAIGVDLSDSSINIARANHSAACFRQ-LDIFQHGAFDRMR 269
                 33.566777777777743.4444444.5789**********************6.******9999886 PP

>> TIGR02072  BioC: biotin biosynthesis protein BioC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.9   0.0   2.6e-05     0.015      36      93 ..     209     264 ..     194     271 .. 0.85

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 2.6e-05
   TIGR02072  36 akvLdiGcGtGiltrallkrfpqaelialDiseemleqakkklsnvqficgdieklpl 93 
                   vL+iGc  G++t+ + +r  +a  i +D+s++ +++a+ + s+  f + di ++  
  MMETSP1137-20121227|1903_1 209 DCVLEIGCDLGATTALMHARCGKA--IGVDLSDSSINIARANHSAACFRQLDIFQHGA 264
                 479*********************..*****************999999999877655 PP

>> TIGR00537  hemK_rel_arch: putative methylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   3.1e-05     0.018      14      80 ..     202     269 ..     195     297 .. 0.83

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 3.1e-05
   TIGR00537  14 nlrelknddvleiGaGtGlvairlkekgkkivatdinPfavkllkenakln.nveldvlesdlfenve 80 
                 ++++ + d vleiG   G  +  ++ ++ k +++d++  ++ +++ n      ++ld+++   f+ ++
  MMETSP1137-20121227|1903_1 202 AIEVHQLDCVLEIGCDLGATTALMHARCGKAIGVDLSDSSINIARANHSAAcFRQLDIFQHGAFDRMR 269
                 566677788************************************99765415789999988888776 PP

>> TIGR02469  CbiT: precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   4.8e-05     0.028      12      79 ..     200     265 ..     195     301 .. 0.86

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 4.8e-05
   TIGR02469  12 LakLrlkkgdvllDiGaGtGsvtieaarlvpkgrvyaierneealelieeNlrrfgvsnieivegdap 79 
                 La++++++ d +l+iG+  G  t  +  +++k   ++++ +  +++  ++N  +  +++ +i++ +a 
  MMETSP1137-20121227|1903_1 200 LAAIEVHQLDCVLEIGCDLGATTALMHARCGK--AIGVDLSDSSINIARANHSAACFRQLDIFQHGAF 265
                 7889999999***********99888888777..78***************************98765 PP

>> TIGR01983  UbiG: 3-demethylubiquinone-9 3-O-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   0.00012     0.069      52      96 ..     210     254 ..     188     270 .. 0.84

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 0.00012
   TIGR01983  52 kvlDvGcGgGllseslarlgaevtgiDlseelievAklhakkdpl 96 
                  vl++Gc  G  +  +  +  + +g+Dls++ i++A++ +++   
  MMETSP1137-20121227|1903_1 210 CVLEIGCDLGATTALMHARCGKAIGVDLSDSSINIARANHSAACF 254
                 489***********999999999*************998776555 PP

>> TIGR00755  ksgA: dimethyladenosine transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0   0.00013     0.079      18      64 ..     196     242 ..     189     265 .. 0.81

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 0.00013
   TIGR00755  18 lqkiveaaeveesdvvlEiGpGlGaLTeellekakkvvaiEiDkrla 64 
                 + + ++a+ev++ d vlEiG+ lGa T  + +++ k +++ +  + +
  MMETSP1137-20121227|1903_1 196 VYRRLAAIEVHQLDCVLEIGCDLGATTALMHARCGKAIGVDLSDSSI 242
                 56678999***********************9999988888755555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (316 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        89  (0.0216967); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.26u 0.16s 00:00:00.42 Elapsed: 00:00:00.40
# Mc/sec: 1042.71
//
Query:       MMETSP1137-20121227|1904_1  [L=494]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.2e-89  296.6   2.3    6.6e-89  295.9   1.6    1.3  1  TIGR02997 Sig70-cyanoRpoD: RNA polymerase sigma factor, cyanobacterial RpoD-like family
    9.3e-75  249.1   0.3    1.1e-73  245.6   0.2    2.0  2  TIGR02393 RpoD_Cterm: RNA polymerase sigma factor RpoD
    6.5e-62  207.4   3.5    2.6e-58  195.6   1.6    2.7  3  TIGR02394 rpoS_proteo: RNA polymerase sigma factor RpoS
    5.2e-34  115.7   2.1    6.2e-33  112.2   0.9    2.1  2  TIGR02980 SigBFG: RNA polymerase sigma-70 factor, sigma-B/F/G subfamily
    2.3e-33  113.0   2.8    9.3e-33  111.0   1.9    2.5  1  TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family
    3.3e-33  113.3   2.7    4.1e-32  109.7   1.0    2.6  2  TIGR02392 rpoH_proteo: alternative sigma factor RpoH
    1.1e-29  101.7   0.5    1.3e-27   95.0   0.1    2.1  2  TIGR02885 spore_sigF: RNA polymerase sigma-F factor
    1.2e-26   91.6   1.2    5.3e-26   89.4   0.2    2.0  2  TIGR02850 spore_sigG: RNA polymerase sigma-G factor
    2.7e-25   87.3   1.0    6.6e-25   86.0   0.6    1.7  2  TIGR02479 FliA_WhiG: RNA polymerase sigma factor, FliA/WhiG family
    2.5e-24   83.9   0.5    3.3e-15   54.1   0.0    2.3  2  TIGR02846 spore_sigmaK: RNA polymerase sigma-K factor
      1e-22   78.5   1.4    3.4e-17   60.5   0.0    2.9  3  TIGR02835 spore_sigmaE: RNA polymerase sigma-E factor
    2.1e-16   58.0   0.5    1.1e-15   55.7   0.1    2.0  2  TIGR02941 Sigma_B: RNA polymerase sigma-B factor
    1.2e-07   29.2   0.0      3e-07   27.9   0.0    1.5  1  TIGR02859 spore_sigH: RNA polymerase sigma-H factor
     0.0056   14.4   0.1      0.016   13.0   0.1    1.8  1  TIGR02952 Sig70_famx2: RNA polymerase sigma-70 factor, TIGR02952 family


Domain annotation for each model (and alignments):
>> TIGR02997  Sig70-cyanoRpoD: RNA polymerase sigma factor, cyanobacterial RpoD-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  295.9   1.6   2.3e-91   6.6e-89       1     298 []     110     419 ..     110     419 .. 0.93

  Alignments for each domain:
  == domain 1    score: 295.9 bits;  conditional E-value: 2.3e-91
   TIGR02997   1 Dlvrlylqeigrvplltaeeeielarqvqellaleekkeeleeqlekepskeelakav......dlsekelkkalkqgrrAkeklikanLRLvvsvAkkYqkrglellDLiqeGslGleravekFdptkGykfstyAyWWirqgitraiaeqsrtiRlPiHiteklnklkkvqrelsqklgrepseaelaealeleveqvrellkaarkpvsLdakv....Gkeedtel.gdlledeeeePeeeveeellkedlee.llaeLkererevlrlrfGledeeeltlaeigeelnlsrervrqiekkalkklr 298
                 D++r+yl +ig+ +ll++eee++la  v+ell+  + +++l ++l+++ps++e+a av      d +++++  +l++ + Ak+++i++nLRLvvs+AkkY +rg+++ DLiqeGs+Gl+ av++Fdp++  +fstyA++Wi+q++trai+++srtiRlP+H+++ ++ +++++ ++  + g +pse+el++ l++++ ++r  +++ar+ +sL+++       ++d +l  ++++d+ ++Pe ++e+ ll+e++++ lla L + ere+l+lr+G+e+ ++++++eig  +++ +ervrqie++al+klr
  MMETSP1137-20121227|1904_1 110 DTMRWYLTSIGQRRLLDNEEEVKLAAAVKELLRWLSVRRSLVDDLGRQPSRREWAMAVggfgssDEEVEQFGAQLSMLEMAKDRMITSNLRLVVSIAKKYANRGVNIQDLIQEGSVGLMTAVDRFDPQRKCRFSTYAHYWIKQSVTRAISDNSRTIRLPVHMNDCVAAIQRARNSFYLEHGYNPSEQELSTMLGISEAKLRLAINSARELISLESPAfvrtAASKDQKLwLEMIPDDVARPEVKLETALLQEQIHRsLLAALLPLEREILSLRYGIEGRDRRSIEEIGLIFEIPKERVRQIESRALRKLR 419
                 889****************************************************9873332224566677778999*****************************************************************************************************************************************87443445566666538***********************7527889************************************************8 PP

>> TIGR02393  RpoD_Cterm: RNA polymerase sigma factor RpoD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.0      0.15        43      60     114 ..     114     168 ..      98     183 .. 0.72
   2 !  245.6   0.2   3.8e-76   1.1e-73       1     236 [.     190     430 ..     190     432 .. 0.94

  Alignments for each domain:
  == domain 1    score: 1.4 bits;  conditional E-value: 0.15
   TIGR02393  60 Wirqai.traiadqartiriPvhlvetinklakaerkllqelgrepteeelaeklg 114
                 W   +i  r + d    +++   + e + +   ++r+l+ +lgr+p++ e a ++g
  MMETSP1137-20121227|1904_1 114 WYLTSIgQRRLLDNEEEVKLAAAVKELL-RWLSVRRSLVDDLGRQPSRREWAMAVG 168
                 4444442678888888888887776655.566799*************99998876 PP

  == domain 2    score: 245.6 bits;  conditional E-value: 3.8e-76
   TIGR02393   1 akkklvesnlrlvvsiakkylnrGlsfldliqeGniGllkavekfdykkgykfstyatWWirqaitraiadqartiriPvhlvetinklakaerkllqelgrepteeelaeklgleaekvkeikklakepvslekpi.....geeedselgdfiedeevespedaaakellkeelee.vletlsereekvlklryGledgkektleevgkefnvtrerirqieskalrklrhpskskklkdf 236
                 ak+++++snlrlvvsiakky+nrG++++dliqeG++Gl+ av++fd ++  +fstya +Wi+q++trai+d +rtir+Pvh+ + +  +++a+ +++ e g +p+e+el+ +lg+++ k++   + a+e +sle+p       ++++  + ++i d +v  pe + +++ll+e++++ +l  l + e+++l lryG+e   ++ +ee+g  f++ +er+rqies+alrklrh++++++lk f
  MMETSP1137-20121227|1904_1 190 AKDRMITSNLRLVVSIAKKYANRGVNIQDLIQEGSVGLMTAVDRFDPQRKCRFSTYAHYWIKQSVTRAISDNSRTIRLPVHMNDCVAAIQRARNSFYLEHGYNPSEQELSTMLGISEAKLRLAINSARELISLESPAfvrtaASKDQKLWLEMIPD-DVARPEVKLETALLQEQIHRsLLAALLPLEREILSLRYGIEGRDRRSIEEIGLIFEIPKERVRQIESRALRKLRHQQNHRNLKPF 430
                 89************************************************************************************************************************************9842222133455556788888.8999**************862566**********************************************************988 PP

>> TIGR02394  rpoS_proteo: RNA polymerase sigma factor RpoS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.4   0.0   0.00049      0.14       7      41 ..     104     138 ..      99     140 .. 0.87
   2 ?    0.8   0.0      0.21        61     129     160 ..     137     168 ..     134     179 .. 0.89
   3 !  195.6   1.6     9e-61   2.6e-58      46     279 ..     189     427 ..     166     429 .. 0.90

  Alignments for each domain:
  == domain 1    score: 9.4 bits;  conditional E-value: 0.00049
   TIGR02394   7 aeekaadaiqlylreiglkplltaeeelalarral 41 
                  ++++ d+++ yl  ig++ ll +eee++la  ++
  MMETSP1137-20121227|1904_1 104 DTSFSDDTMRWYLTSIGQRRLLDNEEEVKLAAAVK 138
                 5677899**********************998765 PP

  == domain 2    score: 0.8 bits;  conditional E-value: 0.21
   TIGR02394 129 vkelnvvlraarklekkldreasveevaelld 160
                 vkel   l  +r+l + l+r++s+ e a +++
  MMETSP1137-20121227|1904_1 137 VKELLRWLSVRRSLVDDLGRQPSRREWAMAVG 168
                 89***********************9998875 PP

  == domain 3    score: 195.6 bits;  conditional E-value: 9e-61
   TIGR02394  46 earkkmiesnlrlvvkiakkyvnrGlplldlieeGnlGllkavekfdPerGfrfstyatWWirqtieraimnqartirlPvhvvkelnvvlraarklekkldreasveevaelldkpvedvskllklnekiasldapl.....dedsekslldlladekseePeelvqnedlkeliea.llaelnekerevlarrfGlreyekatleevakelgltrervrqiqvealkklkrileregv 279
                  a+ +mi snlrlvv+iakky nrG+++ dli+eG +Gl++av++fdP+r  rfstya +Wi+q++ rai + +rtirlPvh+   +  + ra+ ++  +++ ++s +e++++l+ +  +++  ++ + + +sl+ p       + ++k  l++++d+    Pe +++   l+e+i++ lla l   ere+l  r+G+++++   +ee++   ++ +ervrqi   al+kl++  +++++
  MMETSP1137-20121227|1904_1 189 MAKDRMITSNLRLVVSIAKKYANRGVNIQDLIQEGSVGLMTAVDRFDPQRKCRFSTYAHYWIKQSVTRAISDNSRTIRLPVHMNDCVAAIQRARNSFYLEHGYNPSEQELSTMLGISEAKLRLAINSARELISLESPAfvrtaASKDQKLWLEMIPDDV-ARPEVKLETALLQEQIHRsLLAALLPLEREILSLRYGIEGRDRRSIEEIGLIFEIPKERVRQIESRALRKLRHQQNHRNL 427
                 5899**********************************************************************************************************************999*9*******9985222213334566789999986.67********9999887527899*************************************************99887766 PP

>> TIGR02980  SigBFG: RNA polymerase sigma-70 factor, sigma-B/F/G subfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.0     0.094        27      70     116 ..     122     167 ..     115     184 .. 0.80
   2 !  112.2   0.9   2.1e-35   6.2e-33       3     225 ..     189     421 ..     187     423 .. 0.86

  Alignments for each domain:
  == domain 1    score: 2.2 bits;  conditional E-value: 0.094
   TIGR02980  70 rflRDktwavrvpRrlkelaakikkateeLtqklgrePtveeiaeel 116
                 r l D++  v+++  +kel + + +++ +L + lgr+P+ +e a ++
  MMETSP1137-20121227|1904_1 122 RRLLDNEEEVKLAAAVKELLRWL-SVRRSLVDDLGRQPSRREWAMAV 167
                 55678888999999999997665.67889**********99988765 PP

  == domain 2    score: 112.2 bits;  conditional E-value: 2.1e-35
   TIGR02980   3 eareklvelnlkLvesiarrfrsrgeeleDlvQvgtiGLlkaidrfdlsrgvkFstyavPtivGEikrflRDktwavrvpRrlkelaakikkateeLtqklgrePtveeiaeelevseeevvealeaaksysassldasv..e..dddgde...ialldtlgeedeeleev.eeklalkellakLdererrilllrf....fedktQseiaeelGiSQmqvSRlekralkklree 225
                  a++++++ nl+Lv sia+++++rg +++Dl+Q g +GL+ a+drfd++r+ +Fstya   i   + r + D+++++r+p ++ +  a i++a++++  ++g +P+ +e++  l++se +   a+++a++    sl++++  +   +++++    ++ d +++ + +le+   ++++ ++lla+L + er+il lr+     + ++ +ei+    i + +v  +e+ral+klr++
  MMETSP1137-20121227|1904_1 189 MAKDRMITSNLRLVVSIAKKYANRGVNIQDLIQEGSVGLMTAVDRFDPQRKCRFSTYAHYWIKQSVTRAISDNSRTIRLPVHMNDCVAAIQRARNSFYLEHGYNPSEQELSTMLGISEAKLRLAINSARE--LISLESPAfvRtaASKDQKlwlEMIPDDVARPEVKLETAlLQEQIHRSLLAALLPLEREILSLRYgiegRDRRSIEEIGLIFEIPKERVRQIESRALRKLRHQ 421
                 5799*************************************************************************************************************************99998..55555432112222333331114567999999999998725556667899***************533224567789999999******************97 PP

>> TIGR02937  sigma70-ECF: RNA polymerase sigma factor, sigma-70 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  111.0   1.9   3.2e-35   9.3e-33       2     164 ..     190     421 ..     189     422 .. 0.86

  Alignments for each domain:
  == domain 1    score: 111.0 bits;  conditional E-value: 3.2e-35
   TIGR02937   2 aleqliesylplvykvarkylgdsldaeDlvqegflglikaldkfdpe..ssfktyaysvirnsiidalrrkrelkvtneveiske...............................................................keeeeledeed.........rpeeqeeaeelrerleq.alekLperereilklry....leglslkeiAeelgisqetvsrilkraikkLkkk 164
                 a +++i+s+l+lv+++a+ky +++++++Dl+qeg +gl++a+d+fdp+  ++f+tya ++i++s+++a+ +++ ++++++v++++                                                                                    rpe ++e   l+e+++   l+ L + ereil lry     ++ s +ei+ +++i++e+v++i++ra++kL+++
  MMETSP1137-20121227|1904_1 190 AKDRMITSNLRLVVSIAKKYANRGVNIQDLIQEGSVGLMTAVDRFDPQrkCRFSTYAHYWIKQSVTRAISDNS-RTIRLPVHMNDCvaaiqrarnsfylehgynpseqelstmlgiseaklrlainsarelislespafvrtaaskdqkL---------WlemipddvaRPEVKLETALLQEQIHRsLLAALLPLEREILSLRYgiegRDRRSIEEIGLIFEIPKERVRQIESRALRKLRHQ 421
                 56899*****************************************************************999.99999***98779999999999999999999998888888888877777777766666666666655555555543.........0555555555****************97777**************65555699***************************975 PP

>> TIGR02392  rpoH_proteo: alternative sigma factor RpoH
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.0      0.12        36       2      30 ..     111     139 ..     110     151 .. 0.88
   2 !  109.7   1.0   1.4e-34   4.1e-32      36     267 ..     190     421 ..     173     424 .. 0.80

  Alignments for each domain:
  == domain 1    score: 1.7 bits;  conditional E-value: 0.12
   TIGR02392   2 sleaYiravnklplLeaeeekelakrlre 30 
                 +++ Y++++ +  lL++eee +la  ++e
  MMETSP1137-20121227|1904_1 111 TMRWYLTSIGQRRLLDNEEEVKLAAAVKE 139
                 5778********************98765 PP

  == domain 2    score: 109.7 bits;  conditional E-value: 1.4e-34
   TIGR02392  36 aakkLvlshLrlvvkiargYrgYGLpqadliqegniGLmkavkrfdPergvRlvsfavhWikaeiheyilrnWrlvkvattkaqrkLFFnlrkakk..klkgalseeeveavaeeLgvseeevl.emesR...lsgkDlsleaeseededeseelieyLadkeseaeeeleeeeeeekqkeklkealekldersrriieaRwle..dekltLeelaaeygvsaeRvRqiekkalkklkaa 267
                 a +++++s+Lrlvv+ia++Y   G+++ dliqeg +GLm av rfdP+r  R++++a +Wik ++   i  n r +++    +       +++a++   l+   +++e +++++ Lg+se++ +  ++s    +s +  ++  +  +  ++++ ++e++ d+   +e +le+   +e+ +++l +al  l   +r+i++ R      ++  +ee+   +++ +eRvRqie++al+kl+++
  MMETSP1137-20121227|1904_1 190 AKDRMITSNLRLVVSIAKKYANRGVNIQDLIQEGSVGLMTAVDRFDPQRKCRFSTYAHYWIKQSVTRAISDNSRTIRLPVHMNDC--VAAIQRARNsfYLEHGYNPSE-QELSTMLGISEAKLRlAINSArelISLESPAFVRTAAS--KDQKLWLEMIPDDVARPEVKLETALLQEQIHRSLLAALLPL---EREILSLRYGIegRDRRSIEEIGLIFEIPKERVRQIESRALRKLRHQ 421
                 56789************************************************************************99887764..556666666224556677755.67899999999887512332201133333333333333..44568999999999999999999999999999999998887...68999999866235699***************************975 PP

>> TIGR02885  spore_sigF: RNA polymerase sigma-F factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.0     0.014         4      77     123 ..     122     167 ..     104     186 .. 0.84
   2 !   95.0   0.1   4.3e-30   1.3e-27      11     229 ..     189     420 ..     185     422 .. 0.86

  Alignments for each domain:
  == domain 1    score: 5.0 bits;  conditional E-value: 0.014
   TIGR02885  77 krflrddgiikvsrslkelakkirkekeelakklerePtieelaeal 123
                 +r l +++ +k++ ++kel + +   + +l+ +l+r+P+  e a a+
  MMETSP1137-20121227|1904_1 122 RRLLDNEEEVKLAAAVKELLRWLS-VRRSLVDDLGRQPSRREWAMAV 167
                 78899999***********98775.6778**********99987665 PP

  == domain 2    score: 95.0 bits;  conditional E-value: 4.3e-30
   TIGR02885  11 eardklveenlrlvssivkrflnrGyeledlfqiGciGlvkaidkfdlsydvkfstyavPliiGeikrflrddg.iikvsrslkelakkirkekeelakklerePtieelaealglekeevvaalesakslqslydtvh...eddgdpillldkiadegeeesdllekialkeal.....kkldererqiillryf...kdktqt.evakilGisqvqvsrlekkvlkklke 229
                  a+d+++ +nlrlv+si+k+++nrG +++dl q G++Gl+ a+d+fd + + +fstya   i   + r + d+  +i++   + +    i++ ++++  + + +P+ +el+ +lg+++ ++  a++sa++l sl    +       d+ l l++i d+  + +  le   l+e +       l + er+i+ lry    +d+  + e+  i+ i + +v ++e ++l+kl++
  MMETSP1137-20121227|1904_1 189 MAKDRMITSNLRLVVSIAKKYANRGVNIQDLIQEGSVGLMTAVDRFDPQRKCRFSTYAHYWIKQSVTRAISDNSrTIRLPVHMNDCVAAIQRARNSFYLEHGYNPSEQELSTMLGISEAKLRLAINSARELISLESPAFvrtAASKDQKLWLEMIPDDVARPEVKLETALLQEQIhrsllAALLPLEREILSLRYGiegRDRRSIeEIGLIFEIPKERVRQIESRALRKLRH 420
                 589********************************************************************98538******************************************************99998754311134566677899999988877777777777666511111568899*********6333565554268888999***************997 PP

>> TIGR02850  spore_sigG: RNA polymerase sigma-G factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.0      0.19        56     100     144 ..     122     165 ..     103     177 .. 0.85
   2 !   89.4   0.2   1.8e-28   5.3e-26      34     252 ..     189     420 ..     172     422 .. 0.88

  Alignments for each domain:
  == domain 1    score: 0.9 bits;  conditional E-value: 0.19
   TIGR02850 100 rrylrdnnpirvsrslrdiaykalqvrdklvskkskeptvseiak 144
                 rr l +++ ++++ +++++  + l vr  lv +  ++p+ +e a 
  MMETSP1137-20121227|1904_1 122 RRLLDNEEEVKLAAAVKEL-LRWLSVRRSLVDDLGRQPSRREWAM 165
                 7788888899999999998.689***************9998875 PP

  == domain 2    score: 89.4 bits;  conditional E-value: 1.8e-28
   TIGR02850  34 eareklingnlrlvlsviqrfnnrgeyvddlfqvgcigllksidnfdlsqnvkfstyavpmiigeirrylrdnn.pirvsrslrdiaykalqvrdklvskkskeptvseiakelevpkeevvfaldaiqdpvslfepiyn...dggdpiyvmdqisdeknkdeswleeialkealkr.....lnereklilklrf.fegktqmevaeeig....isqaqvsrlekaalkqlkk 252
                  a++++i++nlrlv+s+ ++++nrg +++dl+q g +gl+ ++d fd +++ +fstya   i   + r + dn+ +ir+   + d      + r+ +  ++  +p+ +e++  l++++ ++ +a+++ ++ +sl  p +     + d    ++ i d+  + e  le   l+e ++r     l   e+ il+lr+  eg+ +    eeig    i + +v ++e  al++l++
  MMETSP1137-20121227|1904_1 189 MAKDRMITSNLRLVVSIAKKYANRGVNIQDLIQEGSVGLMTAVDRFDPQRKCRFSTYAHYWIKQSVTRAISDNSrTIRLPVHMNDCVAAIQRARNSFYLEHGYNPSEQELSTMLGISEAKLRLAINSARELISLESPAFVrtaASKDQKLWLEMIPDDVARPEVKLETALLQEQIHRsllaaLLPLEREILSLRYgIEGRDRRS-IEEIGlifeIPKERVRQIESRALRKLRH 420
                 699*********************************************************************9647*********99999999********************************************986111456899999********99999999999999887553336678999*****9568887654.5788844446788999999999999876 PP

>> TIGR02479  FliA_WhiG: RNA polymerase sigma factor, FliA/WhiG family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0       1.2   3.5e+02      88     125 ..     146     186 ..     136     212 .. 0.68
   2 !   86.0   0.6   2.2e-27   6.6e-25      18     222 ..     208     421 ..     194     423 .. 0.80

  Alignments for each domain:
  == domain 1    score: -1.4 bits;  conditional E-value: 1.2
   TIGR02479  88 aieelearlgrepteeeiaeelg...ldlkevrkaleeina 125
                 ++++l   lgr+p+  e a ++g    + +ev++   ++++
  MMETSP1137-20121227|1904_1 146 VRRSLVDDLGRQPSRREWAMAVGgfgSSDEEVEQFGAQLSM 186
                 56778889999999999988865211455555555544444 PP

  == domain 2    score: 86.0 bits;  conditional E-value: 2.2e-27
   TIGR02479  18 vklpssveleDliqaGmlgLldaierydeekgvkFetyavlRirG....ailDeLRkldwvprslrkkakkleeaieelearlgrepteeeiaeelgldlkevrkaleeinaeslvslde..llesedee.lsladliedkksedpeeelereelkeklaea.iekLsereklvlsLyY....eeeLnlkEigevLelsesRvsQlhskalkkLrak 222
                 + + + v+++Dliq G +gL++a++r+d+++  +F+tya ++i+     ai D+ R +  +p ++ + +  +++a+++   ++g +p+e+e+++ lg+++ ++r a + +   +l+sl+   + +  +++ ++l   +  ++ + pe +le+  l+e+++++ ++ L   e+ +lsL Y     ++ ++ Eig ++e+ + Rv Q+ s+al kLr++
  MMETSP1137-20121227|1904_1 208 KYANRGVNIQDLIQEGSVGLMTAVDRFDPQRKCRFSTYAHYWIKQsvtrAISDNSRTI-RLPVHMNDCVAAIQRARNSFYLEHGYNPSEQELSTMLGISEAKLRLAINSAR--ELISLESpaFVRTAASKdQKLWLEMIPDDVARPEVKLETALLQEQIHRSlLAALLPLEREILSLRYgiegRDRRSIEEIGLIFEIPKERVRQIESRALRKLRHQ 421
                 34567899***********************************972222566777766.47888999999*******************************9999886655..45555541144444443545555566666779**************8762699*************4433355799*************************975 PP

>> TIGR02846  spore_sigmaK: RNA polymerase sigma-K factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.1   0.0   1.1e-17   3.3e-15      46     133 ..     187     275 ..     171     309 .. 0.86
   2 !   27.8   0.2   1.2e-09   3.5e-07     160     225 ..     355     421 ..     340     423 .. 0.88

  Alignments for each domain:
  == domain 1    score: 54.1 bits;  conditional E-value: 1.1e-17
   TIGR02846  46 deearnvliernlrlvahivkkfentgkdvddlisiGtiGlikaidsfdtekGtklatyaarcieneilmllralkkt.kgevslqdpi 133
                  e a++++i  nlrlv  i kk+ n g +++dli  G++Gl+ a+d fd+++  +++tya   i+  +   +  + +t +  v+++d +
  MMETSP1137-20121227|1904_1 187 LEMAKDRMITSNLRLVVSIAKKYANRGVNIQDLIQEGSVGLMTAVDRFDPQRKCRFSTYAHYWIKQSVTRAISDNSRTiRLPVHMNDCV 275
                 578***********************************************************999999988876655326667777665 PP

  == domain 2    score: 27.8 bits;  conditional E-value: 1.2e-09
   TIGR02846 160 ekklevkklkkkl.kvlkerekevielryGlkdgeektqreiakklgisrsyvsriekkalkkllke 225
                 e+ l  +++++ l   l + e+e+++lryG++ +++++  ei  +++i +  v +ie +al+kl ++
  MMETSP1137-20121227|1904_1 355 ETALLQEQIHRSLlAALLPLEREILSLRYGIEGRDRRSIEEIGLIFEIPKERVRQIESRALRKLRHQ 421
                 555666777777779999**********************************************986 PP

>> TIGR02835  spore_sigmaE: RNA polymerase sigma-E factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.5   0.0   1.1e-19   3.4e-17      51     127 ..     188     264 ..     171     277 .. 0.86
   2 ?    0.0   0.0      0.35     1e+02     190     213 ..     284     307 ..     270     312 .. 0.84
   3 !   14.7   0.3   1.1e-05    0.0033     158     230 ..     354     422 ..     336     426 .. 0.81

  Alignments for each domain:
  == domain 1    score: 60.5 bits;  conditional E-value: 1.1e-19
   TIGR02835  51 eavksiliernlrlvvyiarkfentginiedlvsigtiglikavntfdpekkiklatyasrcieneilmylrrnnki 127
                 e +k+ +i  nlrlvv ia+k+ n g+ni+dl+  g++gl+ av+ fdp++k +++tya   i++ +   +  n+++
  MMETSP1137-20121227|1904_1 188 EMAKDRMITSNLRLVVSIAKKYANRGVNIQDLIQEGSVGLMTAVDRFDPQRKCRFSTYAHYWIKQSVTRAISDNSRT 264
                 678999*********************************************************99999888888874 PP

  == domain 2    score: 0.0 bits;  conditional E-value: 0.35
   TIGR02835 190 rfgladgeektqkevadllgisqs 213
                  f l+ g++ +++e++ +lgis++
  MMETSP1137-20121227|1904_1 284 SFYLEHGYNPSEQELSTMLGISEA 307
                 5889999***************86 PP

  == domain 3    score: 14.7 bits;  conditional E-value: 1.1e-05
   TIGR02835 158 ivykeleeevdrellkkalkklndrekkilelrfgladgeektqkevadllgisqsyisrlekrilkrlkkei 230
                 + +  l+e+++r+ll    + l   e++il lr+g+++   ++  e+  ++ i +  + ++e r l++l+++ 
  MMETSP1137-20121227|1904_1 354 LETALLQEQIHRSLL----AALLPLEREILSLRYGIEGRDRRSIEEIGLIFEIPKERVRQIESRALRKLRHQQ 422
                 445556666666665....45566799******************************************9875 PP

>> TIGR02941  Sigma_B: RNA polymerase sigma-B factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.0      0.34     1e+02      99     168 ..      80     150 ..      74     158 .. 0.82
   2 !   55.7   0.1   3.6e-18   1.1e-15      13     251 ..     175     420 ..     168     424 .. 0.79

  Alignments for each domain:
  == domain 1    score: 0.1 bits;  conditional E-value: 0.34
   TIGR02941  99 rdktwsvhvprrikelGpkikkavdeltaelqrspkiaeiad.rlgvseeevleimemgqsykalsvddki 168
                 r +t s+h+     ++ ++i ++ d   ++      ++ i + rl   eeev  +  +++  + lsv +++
  MMETSP1137-20121227|1904_1  80 RSRTTSIHMAAAATQVRSRIPRGKDTSFSDDTMRWYLTSIGQrRLLDNEEEVKLAAAVKELLRWLSVRRSL 150
                 88999****************99998877777777888887625777899999999999999999998876 PP

  == domain 2    score: 55.7 bits;  conditional E-value: 3.6e-18
   TIGR02941  13 eeviklikelqknkneeaqeklvkkykdlvesiaykyskgsaihedlvqvGmvGllgairrydlsigkafeafaiptiiGeikrylrdktwsvhvprrikelGpkikkavdeltaelqrspkiaeiadrlgvseeevleimemgqsykalsvddkieadsdGstvalldlvGesedgyd.qtekrlvleki....lpilserekeiiecif.ienl...sqketGerlGisqmhvsrlkrraikklke 251
                 eev ++ +  q    e a++++++    lv sia+ky+  +   +dl+q G vGl++a+ r+d+  + +f ++a   i   + r + d + ++ +p  + +  + i++a + +  e    p+  e++  lg+se ++  +++  ++   l     + ++        l+++ +     + + e  l+ e+i    l  l   e+ei+   + ie+    s  e G  + i +  v +++ ra++kl++
  MMETSP1137-20121227|1904_1 175 EEVEQFGA--QLSMLEMAKDRMITSNLRLVVSIAKKYANRGVNIQDLIQEGSVGLMTAVDRFDPQRKCRFSTYAHYWIKQSVTRAISDNSRTIRLPVHMNDCVAAIQRARNSFYLEHGYNPSEQELSTMLGISEAKLRLAINSARELISLESPAFVRTAASKDQKLWLEMIPDDVARPEvKLETALLQEQIhrslLAALLPLEREILSLRYgIEGRdrrSIEEIGLIFEIPKERVRQIESRALRKLRH 420
                 55555544..344667899********************************************************************************************************************99888888777777666677776666666666777655444333145555555554222267777889999999994344300133445555567788999999999999986 PP

>> TIGR02859  spore_sigH: RNA polymerase sigma-H factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.9   0.0     1e-09     3e-07      18      99 ..     188     269 ..     173     278 .. 0.91

  Alignments for each domain:
  == domain 1    score: 27.9 bits;  conditional E-value: 1e-09
   TIGR02859  18 ekaleyliekyknfvkakarsyflvgadkediiqegmiglykairdykedklssfkafaelcvtrqiitaiktatrqkhipl 99 
                 e+a++ +i    ++v + a+ y   g + +d+iqeg +gl  a+  +++++ + f ++a   + + +  ai   +r   +p+
  MMETSP1137-20121227|1904_1 188 EMAKDRMITSNLRLVVSIAKKYANRGVNIQDLIQEGSVGLMTAVDRFDPQRKCRFSTYAHYWIKQSVTRAISDNSRTIRLPV 269
                 689999*****************************************************************99999988886 PP

>> TIGR02952  Sig70_famx2: RNA polymerase sigma-70 factor, TIGR02952 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   0.1   5.3e-05     0.016     107     169 ..     354     421 ..     332     422 .. 0.77

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 5.3e-05
   TIGR02952 107 vlkelanekl.leavkkLtpkqqeviaLrFaqn....LkiaevarilgktegavkalqfravkkLkrl 169
                  + +l +e++ ++ +  L p ++e+++Lr++ +     +i+e+  i+++ ++ v+++  ra++kL+ +
  MMETSP1137-20121227|1904_1 354 LETALLQEQIhRSLLAALLPLEREILSLRYGIEgrdrRSIEEIGLIFEIPKERVRQIESRALRKLRHQ 421
                 444444444413456789999*********865222368**************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (494 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       174  (0.0424183); expected 82.0 (0.02)
Passed bias filter:                      115  (0.0280351); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                        14  (0.00341297); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.52u 0.16s 00:00:00.68 Elapsed: 00:00:00.70
# Mc/sec: 931.47
//
Query:       MMETSP1137-20121227|1905_1  [L=247]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (247 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        66  (0.0160897); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.20s 00:00:00.41 Elapsed: 00:00:00.32
# Mc/sec: 1018.79
//
Query:       MMETSP1137-20121227|1906_1  [L=203]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (203 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        93  (0.0226719); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.16s 00:00:00.37 Elapsed: 00:00:00.34
# Mc/sec: 788.05
//
Query:       MMETSP1137-20121227|1907_1  [L=243]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      3e-32  110.1   1.2    7.4e-32  108.8   0.9    1.6  1  TIGR01830 3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase
    5.9e-32  108.7   4.2    3.1e-31  106.4   2.9    1.8  1  TIGR01963 PHB_DH: 3-hydroxybutyrate dehydrogenase
    5.8e-30  102.3   6.8    1.8e-29  100.7   4.7    1.6  1  TIGR03206 benzo_BadH: 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase
    4.4e-28   96.2   5.5    4.4e-27   92.9   3.8    2.1  1  TIGR02415 23BDH: acetoin reductases
    5.7e-26   89.5   5.3    2.8e-25   87.2   3.7    2.0  1  TIGR01829 AcAcCoA_reduct: acetoacetyl-CoA reductase
    9.2e-26   88.7   6.4    3.4e-25   86.8   0.1    2.0  2  TIGR03971 SDR_subfam_1: oxidoreductase, SDR family
      5e-25   86.3   2.7    1.2e-24   85.0   1.9    1.6  1  TIGR01832 kduD: 2-deoxy-D-gluconate 3-dehydrogenase
    3.5e-23   80.0   2.9    5.3e-23   79.4   2.0    1.2  1  TIGR03325 BphB_TodD: cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase
    4.4e-18   62.8   4.6    1.2e-17   61.4   3.2    1.6  1  TIGR02632 RhaD_aldol-ADH: rhamnulose-1-phosphate aldolase/alcohol dehydrogenase
    1.1e-13   49.0   5.1    6.8e-13   46.4   3.6    2.0  1  TIGR01831 fabG_rel: putative 3-oxoacyl-(acyl-carrier-protein) reductase
    7.5e-08   29.6   1.5    1.1e-06   25.8   0.1    2.5  2  TIGR02685 pter_reduc_Leis: pteridine reductase
    0.00052   17.3   0.0      0.013   12.7   0.0    2.1  2  TIGR01500 sepiapter_red: sepiapterin reductase
  ------ inclusion threshold ------
       0.04   10.9   0.2      0.082    9.9   0.1    1.5  2  TIGR02197 heptose_epim: ADP-glyceromanno-heptose 6-epimerase


Domain annotation for each model (and alignments):
>> TIGR01830  3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  108.8   0.9   2.4e-34   7.4e-32       2     237 ..      11     239 ..      10     241 .. 0.84

  Alignments for each domain:
  == domain 1    score: 108.8 bits;  conditional E-value: 2.4e-34
   TIGR01830   2 lvtGasrgiGkaiakklakegakvviterskeekaeelaeelkeagvkaaavkldvsdeeevkelveevee.elgeidilvnnAGitrDklllrmkeedwdevikvnLkgvfnvtkavlkkmikkrsGriinissvvgllGnagqanYaasKaGligltkslakElasrnitvnavaPGfietdmtekl....sek.......vkkkileqiplkrlgkpeevaaavafLasdeasyitGqvlkvdGG 237
                  vtG++ giG+ai +++ ++ a  v +        + +  +l+     ++ +k+dvs+ +evk++v++v + + +++di v+nAGi   + + +++ee++d+v+ +n+kg+f   +a+l  +      r++ ++s   ++G++ q  Y  +K+ l  l ksla  +a  ++++nav+PG i+t++ ++     s +       + ++i+++ p+ r+g+peeva++v+ ++     +++G+ +++dGG
  MMETSP1137-20121227|1907_1  11 AVTGGATGIGRAICQAFVQAHAAAVYN-L------DIADGSLEG----VTWIKCDVSKVAEVKAAVAQVLAdNSDKLDIFVANAGIWTCGDFEQITEEEFDRVVGINMKGAFFALQAALPPL------RVVVMGSDQCFVGKVEQNLYGMTKGALGQLVKSLAAQYAPLGVRINAVCPGTIDTPLMHNAvakiSAEkgidskgIYERINTAQPMPRVGQPEEVAQLVLAVCC--NGFMAGALVSIDGG 239
                 59***************9988777766.2......222333433....6889**************9997615689*******************************************998......79*****************************************************97654311113221221112456677888*************9966655..89***********9 PP

>> TIGR01963  PHB_DH: 3-hydroxybutyrate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  106.4   2.9   9.7e-34   3.1e-31       2     253 ..       8     241 ..       7     243 .] 0.89

  Alignments for each domain:
  == domain 1    score: 106.4 bits;  conditional E-value: 9.7e-34
   TIGR01963   2 kvalvtGaasGiglaiakelaaaGakvvvndleeeaaeaaakeleeaggevlalkadvtkeeeiadlieav.aaefgsldiLvnnAGiqhvapieefptekfekiiavnltsafhtiraalpimkkqgwGriiniasvhglvasafKsaYvaaKHglvGltKvlAlEvAetgitanaicPgyvrtpLvekqiadqaktrgiseeqvvkevllkkqptkrfvtveevaelalflasdaaaqitGqalsldgGwt 253
                 +v+ vtG a+Gig+ai +++++a a+ v  +l+ +           +   v+ +k dv+k +e++  +++v a++  +ldi v nAGi +    e+  +e+f++++ +n+++af + +aalp +      r++ ++s + +v+   +  Y  +K +l  l K+lA   A  g++ na+cPg ++tpL+++ +a  + ++gi+   + +  + + qp  r+ ++eeva+l+l ++ +    + G+ +s+dgG+t
  MMETSP1137-20121227|1907_1   8 QVVAVTGGATGIGRAICQAFVQAHAAAVY-NLDIA---------DGSLEGVTWIKCDVSKVAEVKAAVAQVlADNSDKLDIFVANAGIWTCGDFEQITEEEFDRVVGINMKGAFFALQAALPPL------RVVVMGSDQCFVGKVEQNLYGMTKGALGQLVKSLAAQYAPLGVRINAVCPGTIDTPLMHNAVAKISAEKGIDSKGIYER-INTAQPMPRVGQPEEVAQLVLAVCCN--GFMAGALVSIDGGYT 241
                 899*****************988665443.33322.........12223477899**********9998772556789*********************************************9......79**********************************************************************9988776.56889**************9887776..5689**********9 PP

>> TIGR03206  benzo_BadH: 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  100.7   4.7   5.6e-32   1.8e-29       2     249 ..       6     241 ..       5     242 .. 0.85

  Alignments for each domain:
  == domain 1    score: 100.7 bits;  conditional E-value: 5.6e-32
   TIGR03206   2 kdkvaivtgggggiggaicrrfaeegakvavldln..aeaaekvaaairekggkaeavavditdrasvdaavaaa.eealgpvdvlvnnagwdvlkpflktekaewerliainltgalymhhavlkgmverkagrivniasdaarvgssgeavyaackgglvafsktlarelarhgitvnvvcpgptdtalledvks..eaekp...eklieaftraiplgrlgkpddlagailflasddaafitgqvlsvsgglt 249
                 +++v+ vtgg+ gig aic+ f +  a+ av++l+    + e               +++d+++ a v+aava +  +     d++v nag    ++f +  + e++r++ in++ga++   a l+ +      r+v + sd + vg   + +y + kg l  + k+la ++a  g+ +n vcpg  dt+l+++ ++   aek+   + + e +  a p+ r+g+p+++a  +l  a    +f++g ++s+ gg t
  MMETSP1137-20121227|1907_1   6 RGQVVAVTGGATGIGRAICQAFVQAHAA-AVYNLDiaDGSLEG-----------VTWIKCDVSKVAEVKAAVAQVlADNSDKLDIFVANAGIWTCGDFEQITEEEFDRVVGINMKGAFFALQAALPPL------RVVVMGSDQCFVGKVEQNLYGMTKGALGQLVKSLAAQYAPLGVRINAVCPGTIDTPLMHNAVAkiSAEKGidsKGIYERINTAQPMPRVGQPEEVAQLVL--AVCCNGFMAGALVSIDGGYT 241
                 68899*****************997664.56655300333222...........3579***************9835677899******************************************987......9********************************************************9886541134443211568899999************987665..555679************98 PP

>> TIGR02415  23BDH: acetoin reductases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.9   3.8   1.4e-29   4.4e-27       2     251 ..       9     240 ..       8     242 .. 0.88

  Alignments for each domain:
  == domain 1    score: 92.9 bits;  conditional E-value: 1.4e-29
   TIGR02415   2 valvtGaaqGiGkaiaerLakdGfavavadlneetaketakelkekgtk.avavkldvsdkseveeaveqavek.lGeldvlvnnaGvalvtpileiteeeleklynvnvkgvlfGiqaaaekfkklkhkGkiinaasiagvegspelsaysstkfavrgltqtaakeLakkgitvnayaPGivktemreeideklaelagkeigekleefsseiklGresePedvaelvsflasedsdyitGqsilvdGGl 251
                 v  vtG+a GiG+ai + +++   a av +l          ++ +   +    +k dvs+ +ev++av q  ++   +ld++v naG+ +   +++iteee++++  +n+kg +f +qaa   +       +++   s    +g+ e+ +y  tk a+  l ++ a + a+ g+ +na +PG+++t+++++  +k++ ++g++ +  +e++  +  + r+ +Pe+va+lv  la     +++G  + +dGG 
  MMETSP1137-20121227|1907_1   9 VVAVTGGATGIGRAICQAFVQAH-AAAVYNL----------DIADGSLEgVTWIKCDVSKVAEVKAAVAQVLADnSDKLDIFVANAGIWTCGDFEQITEEEFDRVVGINMKGAFFALQAALPPL-------RVVVMGSDQCFVGKVEQNLYGMTKGALGQLVKSLAAQYAPLGVRINAVCPGTIDTPLMHNAVAKISAEKGIDSKGIYERINTAQPMPRVGQPEEVAQLV--LAVCCNGFMAGALVSIDGGY 240
                 5679************9988743.3344333..........33333333034799*************9987651678******************************************9876.......678888999***************************************************************9999999999999*************9..7777789***********95 PP

>> TIGR01829  AcAcCoA_reduct: acetoacetyl-CoA reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.2   3.7     9e-28   2.8e-25       2     240 ..       9     240 ..       8     242 .. 0.83

  Alignments for each domain:
  == domain 1    score: 87.2 bits;  conditional E-value: 9e-28
   TIGR01829   2 valvtGglgGiGtaickrlakdGykvvanvapneerakewlqekevegfdvavvkadvssfeeakaavakveael.GpvdvlvnnaGitrdavfkkmtkeqWeevidtnlnsvfnvtrpviegmlergfGriinissvnGlkGqfGqanysaakaGliGftkalaqegakkgvtvnviaPGyiatemvk.av...red.......vlkkivaqiPvkrlgkpeeiaaavaflaseeagyvtGatlsvnGGl 240
                 v  vtGg  GiG+aic++++++    v     n + a   l     e   v+ +k dvs++ e kaava+v a+   ++d++v naGi     f+++t+e+++ v+ +n+++ f   +  +  +      r++ + s     G++ q  y  +k  l  + k+la++ a  gv +n+++PG i+t++++ av    ++       + ++i +  P+ r+g+pee+a++v  la    g+++Ga +s++GG 
  MMETSP1137-20121227|1907_1   9 VVAVTGGATGIGRAICQAFVQAHAAAVY----NLDIADGSL-----E--GVTWIKCDVSKVAEVKAAVAQVLADNsDKLDIFVANAGIWTCGDFEQITEEEFDRVVGINMKGAFFALQAALPPL------RVVVMGSDQCFVGKVEQNLYGMTKGALGQLVKSLAAQYAPLGVRINAVCPGTIDTPLMHnAVakiSAEkgidskgIYERINTAQPMPRVGQPEEVAQLV--LAVCCNGFMAGALVSIDGGY 240
                 778****************997644333....344443332.....2..456899****************9876268************************************9999888876......89**********************99999**************************97541331112212222222566788888*************99..566668************96 PP

>> TIGR03971  SDR_subfam_1: oxidoreductase, SDR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   2.1     0.025       7.9       2      37 ..       6      42 ..       5      51 .. 0.77
   2 !   86.8   0.1   1.1e-27   3.4e-25      70     264 ..      51     240 ..      46     241 .. 0.88

  Alignments for each domain:
  == domain 1    score: 3.6 bits;  conditional E-value: 0.025
   TIGR03971  2 eGkvalitGaarGqGraeavrla.aeGadiiaidlce 37
                 G+v  +tG a G Gra   ++  a+ a +  +d+++
  MMETSP1137-20121227|1907_1  6 RGQVVAVTGGATGIGRAICQAFVqAHAAAVYNLDIAD 42
                699**************98876514566677778776 PP

  == domain 2    score: 86.8 bits;  conditional E-value: 1.1e-27
   TIGR03971  70 rkadvrkleelravveegvee.fGrldvvvanaGvlsygrafelseeqWdtvldvnlkGvWktvkavvPalierknGGsiiivssvaglkalpglahyaaakhGlvgltktlanelaeygirvnsihPtsvdtamiepeamrelfa....kreeaaraflpalpvsglvepedvadvvawlasdesryitGaqlavdaGa 264
                  k+dv k++e++a+v++ ++    +ld+ vanaG+ + g   +++ee++d v+ +n+kG++ +++a++P l        +++++s    ++   +  y  +k  l  l+k+la + a+ g+r+n++ P ++dt++++ +a++++ a    +++ + +   +a+p++ + +pe+va++v+ ++ +   +++Ga + +d G 
  MMETSP1137-20121227|1907_1  51 IKCDVSKVAEVKAAVAQVLADnSDKLDIFVANAGIWTCGDFEQITEEEFDRVVGINMKGAFFALQAALPPL-------RVVVMGSDQCFVGKVEQNLYGMTKGALGQLVKSLAAQYAPLGVRINAVCPGTIDTPLMH-NAVAKISAekgiDSKGIYERINTAQPMPRVGQPEEVAQLVLAVCCN--GFMAGALVSIDGGY 240
                 589**************9985268*********************************************98.......48999******************************************************.77777777222233333444478999*9999*******99877766..57899999999885 PP

>> TIGR01832  kduD: 2-deoxy-D-gluconate 3-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.0   1.9   3.8e-27   1.2e-24       1     245 [.       3     240 ..       3     243 .] 0.85

  Alignments for each domain:
  == domain 1    score: 85.0 bits;  conditional E-value: 3.8e-27
   TIGR01832   1 fsleGkvalvtGantGlGqgiavglaeaGadivgvgiselsetqekvealGrkflslkadladeeaakalvdeav.eeagkidilvnnaGiirredavefsekdwddvlnvnlkavfllsqavakkllkqGrkgkiiniasllsfqGGirvpsytasksavaGltkllanewakkginvnaiaPGylet....nntealradek.rnaaileri....PagrwGepedlagaavflassasdyvnGailavdGGw 245
                 f+++G+v+ vtG  tG+G++i+ ++ +a a  v     +l+ +   +e     ++ +k d+++ +++ka v++++ ++++k+di+v naGi    d ++++e+++d v+ +n+k  f+  qa+           +++ + s   f G +    y  +k a+  l k+la+++a  g+++na+ PG ++t    n  +++ a++   ++ i eri    P  r G+pe++a+  + la     ++ Ga +++dGG+
  MMETSP1137-20121227|1907_1   3 FDMRGQVVAVTGGATGIGRAICQAFVQAHAAAVY----NLDIADGSLE----GVTWIKCDVSKVAEVKAAVAQVLaDNSDKLDIFVANAGIWTCGDFEQITEEEFDRVVGINMKGAFFALQAALPP-------LRVVVMGSDQCFVGKVEQNLYGMTKGALGQLVKSLAAQYAPLGVRINAVCPGTIDTplmhNAVAKISAEKGiDSKGIYERIntaqPMPRVGQPEEVAQ--LVLAVCCNGFMAGALVSIDGGY 240
                 899**********************999876543....3332223332....3567999*****9999999987626788**************************************99986543.......489999************************************************99666456677888875257889999966667789******976..668889999************8 PP

>> TIGR03325  BphB_TodD: cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.4   2.0   1.7e-25   5.3e-23       3     254 ..       5     239 ..       3     242 .. 0.86

  Alignments for each domain:
  == domain 1    score: 79.4 bits;  conditional E-value: 1.7e-25
   TIGR03325   3 lkdevvlvtggasglgralvdrfv.aegarvavldksaagleeleaahgdkvvgvegdvrllddhkeavarcv.eafgkldtlipnagiwdystalvdipddrideafdevfeinvkgyllavkaalpalvasrgsviftvsnagfypngggalytaakhavvglvkelayelapy.vrvngvapgglstdlrglksldl.adksissvplgdllksvlpigrmadaeeytgayvffatrgdtvpltgavlnydgg 254
                 ++++vv vtgga+g+gra+ + fv a  a v  ld +   le         v  ++ dv  +++ k ava+ + ++  kld++++nagiw          ++  +e fd v  in+kg ++a +aalp l      v+   s+  f  +    ly  +k a+  lvk la ++ap  vr+n v pg + t l   +  ++ a+k i s  + + +++  p+ r+ + ee +   + +a   + + ++ga++  dgg
  MMETSP1137-20121227|1907_1   5 MRGQVVAVTGGATGIGRAICQAFVqAHAAAVYNLDIADGSLEG--------VTWIKCDVSKVAEVKAAVAQVLaDNSDKLDIFVANAGIWTCGD-----FEQITEEEFDRVVGINMKGAFFALQAALPPLR-----VVVMGSDQCFVGKVEQNLYGMTKGALGQLVKSLAAQYAPLgVRINAVCPGTIDTPLMHNAVAKIsAEKGIDSKGIYERINTAQPMPRVGQPEEVAQ--LVLAVCCNGF-MAGALVSIDGG 239
                 6899*******************94566778888888877764........677999************998725678************7643.....35667789*********************995.....777889*********************************66**************99888777636899********************9999865..4555555555.56888888888 PP

>> TIGR02632  RhaD_aldol-ADH: rhamnulose-1-phosphate aldolase/alcohol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.4   3.2   3.7e-20   1.2e-17     412     670 ..       5     240 ..       2     242 .. 0.80

  Alignments for each domain:
  == domain 1    score: 61.4 bits;  conditional E-value: 3.7e-20
   TIGR02632 412 larrvalvtGgasGiGrevarrlvdeGahvvladldaeaaeavaaelvdkfGadkavalkldvtdeeavkaafaevala.yGGvdivvnnaGiavskpleeteleeWdlnldilatGyflvareaarllrkqglggnlvfiasknavvakknalaysaakaaeahlvrllaielaelgirvntvaPdavlrGsgifagewrekraaaygieadkleefykkrsllkrevlpediaeavfllasdklekttGliitvdaGv 670
                 + ++v++vtGga+GiGr++++ +v+  a  v    + + a+     l      + +  +k dv +  +vkaa+a+v  +    +di v+naGi ++ ++e+ ++ee+d+ + i+ +G f+  + a   lr       +v ++s  + v k ++  y  +k a   lv+ la++ a+lg+r+n+v P ++     +   + ++k  a+ gi++  + e  +    + r   pe++a+ v+++  +     +G ++++d+G 
  MMETSP1137-20121227|1907_1   5 MRGQVVAVTGGATGIGRAICQAFVQAHAAAVY---NLDIADGS---L------EGVTWIKCDVSKVAEVKAAVAQVLADnSDKLDIFVANAGIWTCGDFEQITEEEFDRVVGINMKGAFFALQAALPPLR-------VVVMGSDQCFVGKVEQNLYGMTKGALGQLVKSLAAQYAPLGVRINAVCPGTID-TPLM--HNAVAKISAEKGIDSKGIYERINTAQPMPRVGQPEEVAQLVLAVCCNGF--MAGALVSIDGGY 240
                 5689*******************997776553...22222222...2......2344699***************96651678************************************98877776665.......677777777777888899*******************************9874.3333..4456677788899988888888888888888888888888888777655..468888888885 PP

>> TIGR01831  fabG_rel: putative 3-oxoacyl-(acyl-carrier-protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.4   3.6   2.1e-15   6.8e-13       1     237 [.      10     239 ..      10     241 .. 0.77

  Alignments for each domain:
  == domain 1    score: 46.4 bits;  conditional E-value: 2.1e-15
   TIGR01831   1 vlvtgasrgigraialklaadgfeiavhyrsdradaeesvaairaqggnarllkfdvadrvavrevleadiaehgayygv.vlnagiardaafpalseedwdavietnldgfynvihplvmpmirarkggriitlasvsgvmgnrgqvnysaakagligatkalavelakrkitvnciapglidtemvae....v..e.....kdlkealkl.vpmkrvgkaeevaalaaflmsddaayvtrqvisvngg 237
                 v vtg + gigrai + +  + +  av+   d   a+ s+     +g  +  +k dv++  +v++++ + +a++     + v nagi     f  ++ee++d v+  n+ g +  ++  + p+       r++ + s    +g   q  y  +k  l    k+la + a   + +n + pg idt ++ +    +  e     k + e +++  pm rvg++eeva l+  +     ++++  ++s++gg
  MMETSP1137-20121227|1907_1  10 VAVTGGATGIGRAICQAFV-QAHAAAVYN-LDI--ADGSL-----EG--VTWIKCDVSKVAEVKAAVAQVLADNSDKLDIfVANAGIWTCGDFEQITEEEFDRVVGINMKGAFFALQAALPPL-------RVVVMGSDQCFVGKVEQNLYGMTKGALGQLVKSLAAQYAPLGVRINAVCPGTIDTPLMHNavakIsaEkgidsKGIYERINTaQPMPRVGQPEEVAQLVLAVC--CNGFMAGALVSIDGG 239
                 5688999999999865543.445555532.222..23333.....23..4568899999999999999999988877766489******************************9999998887.......99***********************9999**************************87654111132221111123456665526*************985554..567888889999988 PP

>> TIGR02685  pter_reduc_Leis: pteridine reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.1     0.042        13       4      24 ..      10      30 ..       7      81 .. 0.86
   2 !   25.8   0.1   3.4e-09   1.1e-06     171     263 ..     139     241 ..     122     243 .] 0.69

  Alignments for each domain:
  == domain 1    score: 2.6 bits;  conditional E-value: 0.042
   TIGR02685  4 alvtGaakriGrsiavklhqe 24
                  vtG+a  iGr+i +++ q 
  MMETSP1137-20121227|1907_1 10 VAVTGGATGIGRAICQAFVQA 30
                569***********9887654 PP

  == domain 2    score: 25.8 bits;  conditional E-value: 3.4e-09
   TIGR02685 171 slytmakealeGltrsaalelaslqirvngvapGl...sllpdampeevkeeyrrkvplgqreasa.........eqiadvviflvskkakyitGtiikvdGGls 263
                  ly m+k al+ l +s a + a+l++r+n+v+pG     l+ +a+++   e+      +++r  +a         e++a+ v+ ++    ++++G+++ +dGG++
  MMETSP1137-20121227|1907_1 139 NLYGMTKGALGQLVKSLAAQYAPLGVRINAVCPGTidtPLMHNAVAKISAEKGIDSKGIYERINTAqpmprvgqpEEVAQLVLAVCC--NGFMAGALVSIDGGYT 241
                 69********************************72223555666655555433333333333333111111111778887777776..4799999999999997 PP

>> TIGR01500  sepiapter_red: sepiapterin reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.7   0.0   4.2e-05     0.013       2      99 ..       9     112 ..       8     118 .. 0.72
   2 ?    2.6   0.0     0.052        17     162     210 ..     139     189 ..     120     222 .. 0.77

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 4.2e-05
   TIGR01500   2 lllvtGasrGfGrelaqelakrlkaegsvlvLlaRndeaLkeskaeie..aevsalsvdlvsldleaakdv.....edllkaleesikkeeyerillinnaGtlg 99 
                 ++ vtG + G+Gr++ q +++   a    l +   ++e++   k ++   aev+a + + v +d + + d+        +    e+i +ee++r++ in +G+  
  MMETSP1137-20121227|1907_1   9 VVAVTGGATGIGRAICQAFVQAHAAAVYNLDIADGSLEGVTWIKCDVSkvAEVKAAVAQ-VLADNSDKLDIfvanaGIWTCGDFEQITEEEFDRVVGINMKGAFF 112
                 5679******************99****************9999999865666554443.334433333331000023333345788899999999999888765 PP

  == domain 2    score: 2.6 bits;  conditional E-value: 0.052
   TIGR01500 162 alYCaskaaRdmffqvLaleek.edvkvLnYapGvlDtd.mqsqvreeasd 210
                  lY  +k a   + + La  +    v++    pG +Dt  m + v + + +
  MMETSP1137-20121227|1907_1 139 NLYGMTKGALGQLVKSLAAQYApLGVRINAVCPGTIDTPlMHNAVAKISAE 189
                 689999999999999******9778999999*******7355556555554 PP

>> TIGR02197  heptose_epim: ADP-glyceromanno-heptose 6-epimerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.1   0.00026     0.082       2      74 ..      11      83 ..      10     104 .. 0.81
   2 ?   -2.7   0.0       1.8   5.7e+02     135     153 ..     138     155 ..     134     165 .. 0.75

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 0.00026
   TIGR02197  2 ivTGgaGfiGsnlvaalnekgetdilvvDklrkgekllnlkdeeiadyidkeellerlekeelkkveavfHeg 74
                 vTGga  iG+++ +a+ +++++ ++ +D    + + +   ++++++  + +  + ++ +++ +k+++ + ++
  MMETSP1137-20121227|1907_1 11 AVTGGATGIGRAICQAFVQAHAAAVYNLDIADGSLEGVTWIKCDVSKVAEVKAAVAQVLADNSDKLDIFVANA 83
                79************************99976654466777788888888877777777777778887776655 PP

  == domain 2    score: -2.7 bits;  conditional E-value: 1.8
   TIGR02197 135 lNvYgySKllfDelvrkev 153
                 +N+Yg  K  + +lv+ ++
  MMETSP1137-20121227|1907_1 138 QNLYGMTKGALGQLVK-SL 155
                 6999999999999997.33 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (243 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       202  (0.0492443); expected 82.0 (0.02)
Passed bias filter:                      174  (0.0424183); expected 82.0 (0.02)
Passed Vit filter:                        27  (0.00658216); expected 4.1 (0.001)
Passed Fwd filter:                        13  (0.00316919); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.45u 0.18s 00:00:00.63 Elapsed: 00:00:00.56
# Mc/sec: 562.69
//
Query:       MMETSP1137-20121227|1908_1  [L=397]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (397 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       117  (0.0285227); expected 82.0 (0.02)
Passed bias filter:                      108  (0.0263286); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.14s 00:00:00.44 Elapsed: 00:00:00.44
# Mc/sec: 1190.90
//
Query:       MMETSP1137-20121227|1909_1  [L=720]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        3.7    4.2  20.2        5.8    3.6  14.0    1.3  1  TIGR01843 type_I_hlyD: type I secretion membrane fusion protein, HlyD family


Domain annotation for each model (and alignments):
>> TIGR01843  type_I_hlyD: type I secretion membrane fusion protein, HlyD family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6  14.0    0.0014       5.8     122     266 ..     557     694 ..     506     706 .. 0.63

  Alignments for each domain:
  == domain 1    score: 3.6 bits;  conditional E-value: 0.0014
   TIGR01843 122 avaelvkeqeslfesrksalraqlesleaqikqleaeleglqaqlqalrqqleliseelealrkLkekglvsrlelLelereraelqgelaeleaeleklkaeldeleeklqeleqkfre.evseelreaqarlaeleeelskard 266
                 + +   +++++++e++k++l  +l++l ++ k+le      +aq  a++q+  li+ + +  rkL e+ + ++le+Lele+  +++  e+a+++++++ lk++l++l++  ++++   r+   ++e+r+a+ rl++     ++a +
  MMETSP1137-20121227|1909_1 557 RRRLEAERKHAQLEEEKNKLMLELDALRRNSKELE------DAQYLAISQTKSLIQMKGREERKLLEDRYRNELEILELEK--DKAITEVAKEQKKAAHLKRQLEKLQKCSASADRLERKaGELHEVRKAKMRLEKRVFDTKEAVK 694
                 34444555566666666666666666665555554......4677889999999*************************97..57899*******************998777765444303456666666666654444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (720 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       224  (0.0546075); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.18s 00:00:00.65 Elapsed: 00:00:00.54
# Mc/sec: 1759.85
//
Query:       MMETSP1137-20121227|1910_1  [L=716]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (716 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        54  (0.0131643); expected 82.0 (0.02)
Passed bias filter:                       42  (0.0102389); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.15s 00:00:00.56 Elapsed: 00:00:00.44
# Mc/sec: 2147.82
//
Query:       MMETSP1137-20121227|1911_1  [L=63]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (63 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       103  (0.0251097); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.30
# Mc/sec: 277.18
//
Query:       MMETSP1137-20121227|1912_1  [L=465]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (465 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        49  (0.0119454); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.13s 00:00:00.43 Elapsed: 00:00:00.44
# Mc/sec: 1394.88
//
Query:       MMETSP1137-20121227|1913_1  [L=525]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (525 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        98  (0.0238908); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.14s 00:00:00.49 Elapsed: 00:00:00.46
# Mc/sec: 1506.40
//
Query:       MMETSP1137-20121227|1915_1  [L=298]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (298 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        73  (0.0177962); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.12s 00:00:00.35 Elapsed: 00:00:00.33
# Mc/sec: 1191.90
//
Query:       MMETSP1137-20121227|1916_1  [L=212]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (212 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       140  (0.0341297); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.13s 00:00:00.40 Elapsed: 00:00:00.46
# Mc/sec: 608.30
//
Query:       MMETSP1137-20121227|1917_1  [L=562]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.4e-21   73.0   3.4    2.7e-14   50.6   0.1    3.1  3  TIGR00990 3a0801s09: mitochondrial precursor proteins import receptor
    9.7e-16   55.9   0.8    1.8e-15   55.0   0.6    1.4  1  TIGR02349 DnaJ_bact: chaperone protein DnaJ
    6.3e-14   48.6  27.5    2.1e-06   23.7   0.3    3.0  3  TIGR02917 PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein
    7.5e-10   36.4   4.6    1.3e-09   35.7   3.2    1.3  1  TIGR00599 rad18: DNA repair protein rad18
    9.2e-07   26.5  16.7      0.002   15.7   0.7    3.8  3  TIGR02552 LcrH_SycD: type III secretion low calcium response chaperone LcrH/SycD
    1.1e-05   21.9   0.3    1.5e-05   21.4   0.2    1.1  1  TIGR03835 termin_org_DnaJ: terminal organelle assembly protein TopJ
    1.3e-05   22.7  14.3      0.029   11.7   0.6    4.0  4  TIGR02521 type_IV_pilW: type IV pilus biogenesis/stability protein PilW


Domain annotation for each model (and alignments):
>> TIGR00990  3a0801s09: mitochondrial precursor proteins import receptor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.6   0.1   4.6e-17   2.7e-14     126     225 ..     130     230 ..      95     258 .. 0.87
   2 !    5.0   0.0    0.0029       1.7     378     431 ..     288     341 ..     275     346 .. 0.86
   3 !   16.8   0.2   7.7e-07   0.00045     136     238 ..     364     473 ..     347     485 .. 0.86

  Alignments for each domain:
  == domain 1    score: 50.6 bits;  conditional E-value: 4.6e-17
   TIGR00990 126 yaaklkekGnkayrnkdfdkaielyskall.lkedPvyysnraacynaladlekvvedttaaleldpdyvkalnrranaydqlgkyadalldltasslidd 225
                  a +lk +Gn  ++++ + +a+ ly+ka+  +   P +  nraa +  l+d+   v d  aale++p   ka +r+a+a  + g +  a+  l   + + d
  MMETSP1137-20121227|1917_1 130 QAEQLKAAGNSKFEQRVYTDALTLYTKAVNlCPRVPTFLLNRAATHLMLGDFVSCVRDCDAALEIEPSNAKAHKRKAKALIEAGEFERAVESLEQGCRNAD 230
                 5889*************************725567****************************************************99887777776654 PP

  == domain 2    score: 5.0 bits;  conditional E-value: 0.0029
   TIGR00990 378 lgdsdkaeedfdkalkkdsedsdiyyhraqlhfikgefaeaakdydksidldpd 431
                 lg  d a      a+k+d++  + y  raq   + ++ ++a+k  + +  l pd
  MMETSP1137-20121227|1917_1 288 LGLCDAALRTTRDAIKRDADCIEAYVLRAQALVLANDMEQAQKTLKAALRLSPD 341
                 56667777778899******************************9999999988 PP

  == domain 3    score: 16.8 bits;  conditional E-value: 7.7e-07
   TIGR00990 136 kayrnkdfdkaielyskalllkedPvy.......ysnraacynaladlekvvedttaaleldpdyvkalnrranaydqlgkyadalldltassliddfrdeqsaqaverl 238
                 +a  n+df+ a + y+ al   + P +       y++ra+ +  l  ++  ++d+ aa++  +d   a + ra+a   lg ++ al dl  +s     +d q+ +a++r 
  MMETSP1137-20121227|1917_1 364 QAAFNRDFELATQEYTLALSAAQAPSHaplsaalYAERASAHLRLKRYDSALADADAAIAALDDCKPAWLTRASALHALGEHRRALSDLERLSSTVFPNDTQVTHALNRA 473
                 5666899999999999999999888533333333********************************************************99988888999999999985 PP

>> TIGR02349  DnaJ_bact: chaperone protein DnaJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.0   0.6   3.1e-18   1.8e-15       1      66 [.     484     550 ..     484     561 .. 0.89

  Alignments for each domain:
  == domain 1    score: 55.0 bits;  conditional E-value: 3.1e-18
   TIGR02349   1 dYYeiLgvskdAseeeikkAYrklakkyHPDrnkg..ekeaeekfkeineAyevLsdeekraqYDqfg 66 
                 dYY  L v+  As  eik AY++ a++ HPDr +   +++ae+ fk   eA evL de kr+ Y++ g
  MMETSP1137-20121227|1917_1 484 DYYAALRVPSIASGLEIKAAYKQRAMECHPDRAAPheRAQAEAEFKLLGEALEVLGDEMKRKLYNE-G 550
                 9******************************987544899************************98.3 PP

>> TIGR02917  PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.7   0.3   3.6e-09   2.1e-06     124     218 ..     130     224 ..     108     236 .. 0.49
   2 !   19.7   6.7     6e-08   3.5e-05     128     246 ..     245     362 ..     229     366 .. 0.86
   3 !   12.6   5.1   8.4e-06    0.0049     135     234 ..     365     471 ..     348     488 .. 0.81

  Alignments for each domain:
  == domain 1    score: 23.7 bits;  conditional E-value: 3.6e-09
   TIGR02917 124 aaellalrglAaLglgeleeAqksleqAlaiapksleaklglAqlalaenkldearalvdevLtadpknvdAllLkgdlllssgnieeAlaayrk 218
                 +ae l ++g+ ++ ++   +A   + +A +  p+ +   l  A   l  +++ +     d++L+++p+n++A+  k++ l   g++e A++++++
  MMETSP1137-20121227|1917_1 130 QAEQLKAAGNSKFEQRVYTDALTLYTKAVNLCPRVPTFLLNRAATHLMLGDFVSCVRDCDAALEIEPSNAKAHKRKAKALIEAGEFERAVESLEQ 224
                 44444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444443 PP

  == domain 2    score: 19.7 bits;  conditional E-value: 6e-08
   TIGR02917 128 lalrglAaLglgeleeAqksleqAlaiapksleaklglAqlalaenkldearalvdevLtadpknvdAllLkgdlllssgnieeAlaayrkaielkpnaiaallalatilleegefeeA 246
                  +l g Aa+++ + ++A++++++Al+   ++  a lgl +  l+ +  d a      +++ d++ ++A+ L+++ l   ++ e+A ++++ a++l p+++aa +a   ++  e ++  A
  MMETSP1137-20121227|1917_1 245 WQLEGEAAMANNDGALAKSFFASALTLTGAR-RAALGLVKADLSLGLCDAALRTTRDAIKRDADCIEAYVLRAQALVLANDMEQAQKTLKAALRLSPDDAAAGAAMRKARKLERHMGSA 362
                 4689*********************998655.7889**************************************************************999887766665555555555 PP

  == domain 3    score: 12.6 bits;  conditional E-value: 8.4e-06
   TIGR02917 135 aLglgeleeAqksleqAlaiapksleaklglAqlalaen......kldearalvdevLtadpknvdAllLkgdlllssgnieeAlaayrkaie.lkpnaiaallala 234
                 a+ ++++e+A +++ +Al++a++ + a l++A +a  +       ++d+a a +d++++a  +  +A+l +++ l ++g+   Al +++     + pn+ ++  al 
  MMETSP1137-20121227|1917_1 365 AAFNRDFELATQEYTLALSAAQAPSHAPLSAALYAERASahlrlkRYDSALADADAAIAALDDCKPAWLTRASALHALGEHRRALSDLERLSStVFPNDTQVTHALN 471
                 56789*************************998875554455566****************************************9998875414456666555555 PP

>> TIGR00599  rad18: DNA repair protein rad18
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.7   3.2   2.2e-12   1.3e-09      27      69 ..       5      47 ..       2      54 .. 0.94

  Alignments for each domain:
  == domain 1    score: 35.7 bits;  conditional E-value: 2.2e-12
   TIGR00599 27 lRChvCkdffkaPvltsCsHtFCslCiRrcLseepkCPlCrae 69
                + C vC    +aP+lt C+H FC  C+ ++L+++p CP+C ae
  MMETSP1137-20121227|1917_1  5 FTCAVCVALVDAPLLTRCNHVFCLGCLSNWLKSKPSCPTCNAE 47
                78**************************************986 PP

>> TIGR02552  LcrH_SycD: type III secretion low calcium response chaperone LcrH/SycD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.7   3.5e-06     0.002      59     134 ..     138     211 ..     124     233 .. 0.78
   2 !   14.0   1.2   1.1e-05    0.0067      53     132 ..     276     355 ..     249     359 .. 0.88
   3 !    6.1   0.2    0.0032       1.9      59     115 ..     402     458 ..     390     480 .. 0.71

  Alignments for each domain:
  == domain 1    score: 15.7 bits;  conditional E-value: 3.5e-06
   TIGR02552  59 aaclqalkeyeeAiaaYalaaaldlddprpvyhaaecllalgekeeAlkaLklaieiaeekeeyselkeraeamle 134
                 + +  ++  y++A+  Y+ a+ l +  p +++ +a  +l+lg+  +  ++ ++a+ei  +++  ++ k++a+a++e
  MMETSP1137-20121227|1917_1 138 GNSKFEQRVYTDALTLYTKAVNLCPRVPTFLLNRAATHLMLGDFVSCVRDCDAALEIEPSNA--KAHKRKAKALIE 211
                 44555667788888888888888888888888888888888888888888888888888888..666677766655 PP

  == domain 2    score: 14.0 bits;  conditional E-value: 1.1e-05
   TIGR02552  53 kywlgLaaclqalkeyeeAiaaYalaaaldlddprpvyhaaecllalgekeeAlkaLklaieiaeekeeyselkeraeam 132
                 + +lgL  +   l+  + A+ +   a + d+d  ++++ +a+ l++ ++ e+A+k+Lk+a++++ ++++  +  ++a+++
  MMETSP1137-20121227|1917_1 276 RAALGLVKADLSLGLCDAALRTTRDAIKRDADCIEAYVLRAQALVLANDMEQAQKTLKAALRLSPDDAAAGAAMRKARKL 355
                 5677888888888888888888889999999999*********************************9999999999887 PP

  == domain 3    score: 6.1 bits;  conditional E-value: 0.0032
   TIGR02552  59 aaclqalkeyeeAiaaYalaaaldlddprp.vyhaaecllalgekeeAlkaLklaiei 115
                 a+++ +lk+y+ A+a  ++a  + ldd +p  + +a  l alge ++Al++L++   +
  MMETSP1137-20121227|1917_1 402 ASAHLRLKRYDSALADADAAI-AALDDCKPaWLTRASALHALGEHRRALSDLERLSST 458
                 789999*******98755554.445555550557789999**********99876554 PP

>> TIGR03835  termin_org_DnaJ: terminal organelle assembly protein TopJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   0.2   2.5e-08   1.5e-05       3      69 ..     484     552 ..     482     560 .. 0.88

  Alignments for each domain:
  == domain 1    score: 21.4 bits;  conditional E-value: 2.5e-08
   TIGR03835   3 DyyevLgidrDadeqeikkafrkLakkyhPDrnka...adaakifaeineandvLsnPkkraryDkyGhD 69 
                 Dyy  L +   a   eik a+++ a   hPDr      a+a+  f+ + ea +vL +  kr+ y+  G+D
  MMETSP1137-20121227|1917_1 484 DYYAALRVPSIASGLEIKAAYKQRAMECHPDRAAPherAQAEAEFKLLGEALEVLGDEMKRKLYNE-GYD 552
                 9*******************************7533369999*******************99974.555 PP

>> TIGR02521  type_IV_pilW: type IV pilus biogenesis/stability protein PilW
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0      0.84   4.9e+02     168     197 ..     130     159 ..     121     169 .. 0.63
   2 !   10.3   0.0   0.00013     0.079      36      94 ..     170     228 ..     163     234 .. 0.88
   3 !   11.7   0.6     5e-05     0.029      45     100 ..     289     344 ..     270     347 .. 0.89
   4 !    7.1   0.8    0.0013      0.74      31      86 ..     395     450 ..     373     467 .. 0.87

  Alignments for each domain:
  == domain 1    score: -2.1 bits;  conditional E-value: 0.84
   TIGR02521 168 rpesllelaelklkkgqyaeAralleryqq 197
                 ++e+l++  + k++++ y++A  l+ +  +
  MMETSP1137-20121227|1917_1 130 QAEQLKAAGNSKFEQRVYTDALTLYTKAVN 159
                 455555555666777777777766666554 PP

  == domain 2    score: 10.3 bits;  conditional E-value: 0.00013
   TIGR02521  36 qLaleYleqgdlekAkenlekAleldpkdadanlalAlyyqqlgelekAeesfrkAltl 94 
                 + a++ l  gd+ +  ++ + Ale++p++a+a++  A ++ + ge e+A es +++ + 
  MMETSP1137-20121227|1917_1 170 NRAATHLMLGDFVSCVRDCDAALEIEPSNAKAHKRKAKALIEAGEFERAVESLEQGCRN 228
                 6688888999999999*********************************9999887765 PP

  == domain 3    score: 11.7 bits;  conditional E-value: 5e-05
   TIGR02521  45 gdlekAkenlekAleldpkdadanlalAlyyqqlgelekAeesfrkAltlkpnngd 100
                 g  ++A +   +A++ d++  +a+  +A ++    + e+A++  + Al+l+p++++
  MMETSP1137-20121227|1917_1 289 GLCDAALRTTRDAIKRDADCIEAYVLRAQALVLANDMEQAQKTLKAALRLSPDDAA 344
                 6678899999******************************************9986 PP

  == domain 4    score: 7.1 bits;  conditional E-value: 0.0013
   TIGR02521  31 akirvqLaleYleqgdlekAkenlekAleldpkdadanlalAlyyqqlgelekAee 86 
                 a+ + + a + l+ + +++A ++ + A+++  + + a+l +A ++  lge+ +A  
  MMETSP1137-20121227|1917_1 395 AALYAERASAHLRLKRYDSALADADAAIAALDDCKPAWLTRASALHALGEHRRALS 450
                 67788999999*****************************************9965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (562 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       128  (0.0312043); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.52u 0.14s 00:00:00.66 Elapsed: 00:00:00.71
# Mc/sec: 1044.76
//
Query:       MMETSP1137-20121227|1918_1  [L=198]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (198 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        61  (0.0148708); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.14s 00:00:00.32 Elapsed: 00:00:00.46
# Mc/sec: 568.13
//
Query:       MMETSP1137-20121227|1920_1  [L=87]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (87 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        57  (0.0138957); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.15s 00:00:00.29 Elapsed: 00:00:00.39
# Mc/sec: 294.44
//
Query:       MMETSP1137-20121227|1921_1  [L=322]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (322 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       194  (0.047294); expected 82.0 (0.02)
Passed bias filter:                      118  (0.0287665); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.14s 00:00:00.41 Elapsed: 00:00:00.56
# Mc/sec: 745.62
//
Query:       MMETSP1137-20121227|1922_1  [L=262]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.6e-21   72.8   0.0    7.4e-21   72.1   0.0    1.3  1  TIGR01068 thioredoxin: thioredoxin
    2.5e-13   48.1   0.0    4.3e-13   47.3   0.0    1.3  1  TIGR01126 pdi_dom: protein disulfide-isomerase domain
    1.6e-11   42.3   0.0    2.1e-11   41.9   0.0    1.1  1  TIGR01130 ER_PDI_fam: protein disulfide isomerases
  ------ inclusion threshold ------
      0.023   12.1   0.0      0.072   10.5   0.0    1.8  2  TIGR00385 dsbE: periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily


Domain annotation for each model (and alignments):
>> TIGR01068  thioredoxin: thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.1   0.0   7.2e-24   7.4e-21      14      94 ..       9      89 ..       2      95 .. 0.87

  Alignments for each domain:
  == domain 1    score: 72.1 bits;  conditional E-value: 7.2e-24
   TIGR01068 14 dklvlvDfwAeWCgpCkmlaPvleelakele.ekvkvvKlnvdeeqeiaakygirsiPtlllfkngkevkrvvGakpkaalk 94
                 kl  +Df A+WCgpCkm+ P +  +a++ +   v+++K++vde+++ aa+ g+r++Pt  ++++g +v++  Ga ++    
  MMETSP1137-20121227|1922_1  9 GKLLAIDFTASWCGPCKMIGPRFGAFAESGNfPFVRFAKVDVDENSDAAAACGVRAMPTFQFYRHGTKVDEFTGADENRL-L 89
                46788********************997654267****************************************988544.3 PP

>> TIGR01126  pdi_dom: protein disulfide-isomerase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.3   0.0   4.2e-16   4.3e-13      13      94 ..       8      86 ..       3      94 .. 0.89

  Alignments for each domain:
  == domain 1    score: 47.3 bits;  conditional E-value: 4.2e-16
   TIGR01126 13 enkdvlvefyaPWCGhCkklaPeyeklakelkkeeekvkiakvdataekelaskfkvsgfPtlkffkkgkkepvdyeGeRea 94
                + k + ++f+a WCG Ck + P +   a++ +     v  akvd ++++++a+  +v++ Pt +f+++g+k   +++G+ e+
  MMETSP1137-20121227|1922_1  8 DGKLLAIDFTASWCGPCKMIGPRFGAFAESGNF--PFVRFAKVDVDENSDAAAACGVRAMPTFQFYRHGTK-VDEFTGADEN 86
                5677889*********************99876..57********************************96.8899997654 PP

>> TIGR01130  ER_PDI_fam: protein disulfide isomerases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.9   0.0     2e-14   2.1e-11      19     113 ..      10     101 ..       4     121 .. 0.86

  Alignments for each domain:
  == domain 1    score: 41.9 bits;  conditional E-value: 2e-14
   TIGR01130  19 elvLveFYAPWCGHCksLaPeYekAAeelkkkspkvklakvDateekelaqkygvsGyPtLkifrngesssdYnGpReaegivkylkkqsgPask 113
                 +l+ + F A WCG Ck + P + + Ae    + p v  akvD  e+++ a   gv+  Pt +++r+g+++ +++G+  ++ +   l++  gP++ 
  MMETSP1137-20121227|1922_1  10 KLLAIDFTASWCGPCKMIGPRFGAFAES--GNFPFVRFAKVDVDENSDAAAACGVRAMPTFQFYRHGTKVDEFTGAD-ENRLLALLHQLGGPPVD 101
                 566789*****************99995..67788****************************************95.55677778888888875 PP

>> TIGR00385  dsbE: periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0     7e-05     0.072      61     104 ..       7      54 ..       2      61 .. 0.74
   2 ?   -2.9   0.0      0.95   9.7e+02     122     140 ..     207     225 ..     171     230 .. 0.67

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 7e-05
   TIGR00385  61 kkgklvLlnvwasWCptCraehplLkelakeg....lrivgvdykDes 104
                 + gkl  +++ asWC++C+   p    +a++g    +r   vd  ++s
  MMETSP1137-20121227|1922_1   7 NDGKLLAIDFTASWCGPCKMIGPRFGAFAESGnfpfVRFAKVDVDENS 54 
                 56889999***********99998888888887444444455555555 PP

  == domain 2    score: -2.9 bits;  conditional E-value: 0.95
   TIGR00385 122 laDekGklaldlGvygaPe 140
                 ++ ++G+ ++  G +ga e
  MMETSP1137-20121227|1922_1 207 VQLPDGECGVVCGLQGAAE 225
                 4557888888888888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (262 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        86  (0.0209654); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.22u 0.14s 00:00:00.36 Elapsed: 00:00:00.42
# Mc/sec: 823.36
//
Query:       MMETSP1137-20121227|1924_1  [L=229]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (229 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        72  (0.0175524); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.19s 00:00:00.35 Elapsed: 00:00:00.40
# Mc/sec: 755.64
//
Query:       MMETSP1137-20121227|1925_1  [L=68]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (68 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        18  (0.0043881); expected 82.0 (0.02)
Passed bias filter:                       18  (0.0043881); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.14s 00:00:00.27 Elapsed: 00:00:00.41
# Mc/sec: 218.91
//
Query:       MMETSP1137-20121227|1926_1  [L=190]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (190 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        86  (0.0209654); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.17s 00:00:00.35 Elapsed: 00:00:00.28
# Mc/sec: 864.76
//
Query:       MMETSP1137-20121227|1927_1  [L=410]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (410 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        73  (0.0177962); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.13s 00:00:00.42 Elapsed: 00:00:00.40
# Mc/sec: 1352.89
//
Query:       MMETSP1137-20121227|1928_1  [L=65]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (65 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        77  (0.0187713); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.15s 00:00:00.27 Elapsed: 00:00:00.28
# Mc/sec: 306.40
//
Query:       MMETSP1137-20121227|1929_1  [L=109]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (109 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        56  (0.0136519); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.15s 00:00:00.30 Elapsed: 00:00:00.22
# Mc/sec: 653.95
//
Query:       MMETSP1137-20121227|1930_1  [L=101]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       109  (0.0265724); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.14s 00:00:00.29 Elapsed: 00:00:00.28
# Mc/sec: 459.69
//
Query:       MMETSP1137-20121227|1931_1  [L=202]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (202 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       110  (0.0268162); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.15s 00:00:00.34 Elapsed: 00:00:00.32
# Mc/sec: 833.18
//
Query:       MMETSP1137-20121227|1932_1  [L=363]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (363 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       202  (0.0492443); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.13s 00:00:00.41 Elapsed: 00:00:00.40
# Mc/sec: 1197.80
//
Query:       MMETSP1137-20121227|1933_1  [L=798]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.8e-23   79.0   0.2    4.4e-21   72.8   0.0    2.5  2  TIGR01389 recQ: ATP-dependent DNA helicase RecQ
    2.8e-19   67.0   4.7    3.3e-18   63.5   0.0    2.6  3  TIGR00614 recQ_fam: ATP-dependent DNA helicase, RecQ family
    1.9e-18   63.4   0.1    2.4e-09   33.3   0.0    2.7  3  TIGR04121 DEXH_lig_assoc: DEXH box helicase, DNA ligase-associated
    6.3e-14   49.0   0.0    7.7e-08   28.8   0.0    2.2  2  TIGR03817 DECH_helic: helicase/secretion neighborhood putative DEAH-box helicase
    1.3e-05   22.0   7.0     0.0037   13.8   0.0    2.9  3  TIGR00643 recG: ATP-dependent DNA helicase RecG
     0.0062   12.7   0.1     0.0062   12.7   0.0    2.1  2  TIGR00580 mfd: transcription-repair coupling factor
     0.0083   12.2   0.0     0.0083   12.2   0.0    2.4  2  TIGR00631 uvrb: excinuclease ABC subunit B


Domain annotation for each model (and alignments):
>> TIGR01389  recQ: ATP-dependent DNA helicase RecQ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    3.3   0.1    0.0079       4.6       7      50 ..     384     427 ..     378     431 .. 0.91
   2 !   72.8   0.0   7.4e-24   4.4e-21     198     327 ..     605     736 ..     569     750 .. 0.89

  Alignments for each domain:
  == domain 1    score: 3.3 bits;  conditional E-value: 0.0079
   TIGR01389   7 evFGyeeFRggqeeiieevldgrdvlavlPtGGGkslCYqvPaL 50 
                 +  Gye+  g q + i   l+ +dv++v  tG Gk   + +P L
  MMETSP1137-20121227|1933_1 384 KKVGYEKPTGVQMQCIPLGLACKDVIGVAKTGSGKTCAFVLPML 427
                 4569********************************99999977 PP

  == domain 2    score: 72.8 bits;  conditional E-value: 7.4e-24
   TIGR01389 198 Renlafsv..vkkenkkkqlleylkkereksGiiYassRkkveelaeaLeskgiealaYhaGlskkvRaeaqekFleddvkvvvatvaFGmGidksdvRfvihldlPknlesyyqeaGRaGRDGlkaeaill 327
                 ++n++ ++   k+++kk++ll+ l++  +   i++++ +k  + la+ L + g++++  h+G ++++R+ a e F   + +++vat   G Gid   v +vi +d+Pk++esy    GR GR G+k  a ++
  MMETSP1137-20121227|1933_1 605 KDNITQNIefLKENKKKDKLLDLLQNGPPPPIIVFCNGKKGCDVLARSLDKMGFPTAVIHSGKDQATREAAIEGFKSGEFEILVATDIAGRGIDIQGVEHVINYDMPKDIESYTHRIGRTGRAGKKGIATTF 736
                 566655441168999999**********************************************************************************************************99877665 PP

>> TIGR00614  recQ_fam: ATP-dependent DNA helicase, RecQ family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.3   0.6       2.1   1.2e+03     337     357 ..     108     128 ..      56     148 .. 0.45
   2 !    5.1   0.0     0.003       1.8       5      48 ..     384     427 ..     381     431 .. 0.91
   3 !   63.5   0.0   5.6e-21   3.3e-18     208     332 ..     616     739 ..     585     760 .. 0.84

  Alignments for each domain:
  == domain 1    score: -4.3 bits;  conditional E-value: 2.1
   TIGR00614 337 llrrllveekdekkreyklkl 357
                  +++l+ e +  +++ey +k+
  MMETSP1137-20121227|1933_1 108 EIQQLMDEAERAQRQEYMQKV 128
                 222333333333333333333 PP

  == domain 2    score: 5.1 bits;  conditional E-value: 0.003
   TIGR00614   5 kvfglesfrpvqlevinavlegrdalvvmatGgGksLCyqlpav 48 
                 k+ g+e+   vq++ i   l+ +d++ v  tG Gk   + lp +
  MMETSP1137-20121227|1933_1 384 KKVGYEKPTGVQMQCIPLGLACKDVIGVAKTGSGKTCAFVLPML 427
                 5679999999**************************99999865 PP

  == domain 3    score: 63.5 bits;  conditional E-value: 5.6e-21
   TIGR00614 208 kkskiledllkfivkefkgksGiiYClsrkkveqvaaeLqkkglaaaaYhagleesarkevqkkflrdeiqvvvatvafGmGinkpdvRfvihyslpksiesYYqesGRaGRDglksecvlfyap 332
                 k++k  ++ll ++++  + +  i++C+ +k ++ +a +L k g  +a  h+g ++++r+   + f   e +++vat   G Gi+   v +vi y++pk+iesY   +GR GR g k  ++ f + 
  MMETSP1137-20121227|1933_1 616 KENKKKDKLLDLLQN-GPPPPIIVFCNGKKGCDVLARSLDKMGFPTAVIHSGKDQATREAAIEGFKSGEFEILVATDIAGRGIDIQGVEHVINYDMPKDIESYTHRIGRTGRAGKKGIATTFVTG 739
                 333445566666664.444455******************************************************999***********************************99988887665 PP

>> TIGR04121  DEXH_lig_assoc: DEXH box helicase, DNA ligase-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.6      0.21   1.3e+02     554     585 ..     107     138 ..      99     151 .. 0.80
   2 !   26.7   0.0   4.1e-10   2.4e-07      18     152 ..     395     530 ..     379     536 .. 0.87
   3 !   33.3   0.0   4.1e-12   2.4e-09     252     359 ..     637     740 ..     623     747 .. 0.89

  Alignments for each domain:
  == domain 1    score: -2.2 bits;  conditional E-value: 0.21
   TIGR04121 554 ervrelleeakelkelpelkaveellelQkrr 585
                 e++++l++ea++ ++ + +++v++ l+ Q++r
  MMETSP1137-20121227|1933_1 107 EEIQQLMDEAERAQRQEYMQKVRDALREQRER 138
                 5788999999998888999*********9875 PP

  == domain 2    score: 26.7 bits;  conditional E-value: 4.1e-10
   TIGR04121  18 QkevleaaeegesglliapTGaGKTlavflpsliela.....akekpkkglkvlyitPLkaLakdieraleapieelgleirvelrtGDtssserarqrkkppdiLltTpEslaLllsskdaeklfkdlravvvDElHeL 152
                 Q++ +    + ++ + +a TG+GKT a +lp+l  ++     +ke+ ++g  +l ++P + L ++ie+  ++ + el  +irv +  G  s +e+    ++  ++++ Tp  l+  l +     ++++++ vv+DE   +
  MMETSP1137-20121227|1933_1 395 QMQCIPLGLACKDVIGVAKTGSGKTCAFVLPMLEYILsqppiTKETASEGPLALIMAPTRELVQQIEEETRKFAGEL--KIRVYSVVGGLSIEEQGFIANQGVEVMVATPGRLNDALDR--RYMVLNQCNYVVLDEADRM 530
                 66666666677788889****************999999998888999*************************9987..589999***************************9987765..5679***********8766 PP

  == domain 3    score: 33.3 bits;  conditional E-value: 4.1e-12
   TIGR04121 252 lvFtNtRsqaEllfqaLleaneelaleialhHgsldkeqRekveaalkagklravvcTssLdLGvDfgdvdlviqvGspkgvaRllQRiGRsnHrldepskillvptn 359
                 +vF+N ++ +++l ++L    +++  + a+ H+  d+++Re   +++k+g++ ++v+T     G+D + v+ vi+   pk +     RiGR++ + ++    ++v ++
  MMETSP1137-20121227|1933_1 637 IVFCNGKKGCDVLARSL----DKMGFPTAVIHSGKDQATREAAIEGFKSGEFEILVATDIAGRGIDIQGVEHVINYDMPKDIESYTHRIGRTGRAGKKGIATTFVTGE 740
                 78999999888765555....6677889****************************************************************9887777777777665 PP

>> TIGR03817  DECH_helic: helicase/secretion neighborhood putative DEAH-box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.8   0.0   1.3e-10   7.7e-08      21     168 ..     375     529 ..     365     546 .. 0.86
   2 !   17.7   0.0     3e-07   0.00018     318     382 ..     672     736 ..     647     752 .. 0.86

  Alignments for each domain:
  == domain 1    score: 28.8 bits;  conditional E-value: 1.3e-10
   TIGR03817  21 vepdvvaaleaaGieapwqhqaraaelahaGehvvvatgtasGkslayllPvlsalaedp.........ratalylaPtkalaadqlravkelee.rdvraatydGdtpaeerewireka.ryvltnPdmlhlgilpsharWakflralryvvvdechs 168
                 +++++ a +++ G e+p   q++   l  a ++v+  + t sGk+ a+ lP+l+ + ++p         +  al +aPt+ l +      +++    ++r+    G  + ee+ +i +++ +++++ P  l  ++ +       +l++ +yvv+de+ +
  MMETSP1137-20121227|1933_1 375 LNEEILAVIKKVGYEKPTGVQMQCIPLGLACKDVIGVAKTGSGKTCAFVLPMLEYILSQPpitketaseGPLALIMAPTRELVQQIEEETRKFAGeLKIRVYSVVGGLSIEEQGFIANQGvEVMVATPGRLNDALDRR----YMVLNQCNYVVLDEADR 529
                 578899999**************************************************7777777777999***********99999999887636888888889999999999998873677899***99998554....4689**********976 PP

  == domain 2    score: 17.7 bits;  conditional E-value: 3e-07
   TIGR03817 318 rreleralkdGellgvaatnalelGvdisGldavviaGfPGtvaslwqqaGraGrrgqdalvvlv 382
                 r +  + +k+Ge+  ++at+    G+di G++ v+    P  + s+  ++Gr+Gr+g++ +++  
  MMETSP1137-20121227|1933_1 672 REAAIEGFKSGEFEILVATDIAGRGIDIQGVEHVINYDMPKDIESYTHRIGRTGRAGKKGIATTF 736
                 5555566899*************************************************998754 PP

>> TIGR00643  recG: ATP-dependent DNA helicase RecG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   2.6       1.2   7.1e+02     102     166 ..      71     136 ..      33     198 .. 0.50
   2 !   10.7   0.0   5.7e-05     0.033     266     368 ..     415     529 ..     409     533 .. 0.75
   3 !   13.8   0.0   6.3e-06    0.0037     485     533 ..     660     708 ..     646     745 .. 0.80

  Alignments for each domain:
  == domain 1    score: -3.6 bits;  conditional E-value: 1.2
   TIGR00643 102 lkasevksekaqeielkkilpvYplteg.....lkskklrklvkealdvlaklledelpkelrekyklls 166
                 l+++ ++ ++a +++     p+Y ++++     l++kk ++ +++ +d  ++  ++e  +++r+  +   
  MMETSP1137-20121227|1933_1  71 LEEKMAERKHAATLD----RPIYMTKREreaaeLEAKKEEEEIQQLMDEAERAQRQEYMQKVRDALREQR 136
                 222222222222233....366666555445555555555666666665555533333333333332222 PP

  == domain 2    score: 10.7 bits;  conditional E-value: 5.7e-05
   TIGR00643 266 GsGKTvVavlallavi...........esGyqvalmaPTeiLAeQhyeklrelleplgievalLtgslkkkkkkelleeiasGeielvvGThallqekve.....fkeLalviiDEQhr 368
                 GsGKT   vl +l+ i           ++G  +++maPT  L +Q  e+ r++  +l+i+v  ++g l  ++    +  ia+  +e++v T   l+++ +     +++ ++v+ DE  r
  MMETSP1137-20121227|1933_1 415 GSGKTCAFVLPMLEYIlsqppitketaSEGPLALIMAPTRELVQQIEEETRKFAGELKIRVYSVVGGLSIEE----QGFIANQGVEVMVATPGRLNDALDrrymvLNQCNYVVLDEADR 529
                 9999999999999876333333333224688999****************************9999998765....4566777788888888777776553322245667888888766 PP

  == domain 3    score: 13.8 bits;  conditional E-value: 6.3e-06
   TIGR00643 485 vallhgrlksdekeevleeFrekevdiLvaTtviEvGvdvPnatvmvie 533
                  a++h+   ++ +e+++e F+++e +iLvaT +   G+d+  +  ++ +
  MMETSP1137-20121227|1933_1 660 TAVIHSGKDQATREAAIEGFKSGEFEILVATDIAGRGIDIQGVEHVINY 708
                 6799*999*******************************9776666555 PP

>> TIGR00580  mfd: transcription-repair coupling factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   6.0       0.6   3.5e+02     145     279 ..      54     186 ..      23     205 .. 0.41
   2 !   12.7   0.0   1.1e-05    0.0062     688     759 ..     661     731 ..     657     742 .. 0.79

  Alignments for each domain:
  == domain 1    score: -3.0 bits;  conditional E-value: 0.6
   TIGR00580 145 aaeelereleefleaaleakklisaerlsleveelvleakalslsevelesal.slkaseaieaaqeaeraelaeilalkeellralkagfkvvllaesesqaerlksllkesdiaakvtaesskllkeavkavle 279
                  ++  +re ++ +++a+ ++k+ + +++ +  + ++++++  + +e+e +++  ++++  +  ++ + +++ ++++  +++e  r  +   +++l +++++++ ++k+ l++ +   ++++ +   +++++k+v++
  MMETSP1137-20121227|1933_1  54 LEALRQREAKRRQQQASLEEKMAERKHAATLDRPIYMTKREREAAELEAKKEEeEIQQLMDEAERAQRQEY-MQKVRDALRE-QRERERSNRSALPLPKKEEQPKTKEELDREKELQQIKN-AYLGVRKKKKKVMK 186
                 22223333333333333333333333333333333333222222222222211122222222222222222.2222222222.34444445555555666666666666666544444333.22222333333333 PP

  == domain 2    score: 12.7 bits;  conditional E-value: 1.1e-05
   TIGR00580 688 aiaHgqmeeeeleevmleFlkkefdvLvcTtiiEsGidipnaNTiiierAdkfGlaqLyQLrGRvGRskkka 759
                 a++H+  ++   e  ++ F+++ef++Lv+T i   Gidi  +  +i  +  k   +  + + GR GR  kk+
  MMETSP1137-20121227|1933_1 661 AVIHSGKDQATREAAIEGFKSGEFEILVATDIAGRGIDIQGVEHVINYDMPKDIESYTHRI-GRTGRAGKKG 731
                 799999999999***************************9998887555544444444443.6666666665 PP

>> TIGR00631  uvrb: excinuclease ABC subunit B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -6.1   7.6       4.9   2.9e+03     566     656 ..      62     134 ..      47     146 .. 0.48
   2 !   12.2   0.0   1.4e-05    0.0083     448     539 ..     638     727 ..     620     744 .. 0.83

  Alignments for each domain:
  == domain 1    score: -6.1 bits;  conditional E-value: 4.9
   TIGR00631 566 errrkiqieynee..hgitPktikkkikeilekkekekekeakkkkkkaaeeaeklsekelkklikklekemkeaakdlefeeaaklrDeike 656
                 ++rr++q +  e+  + ++  t+ ++i  + ++                    ++ +e e+kk+ +++++ m ea ++++ e   k+rD ++e
  MMETSP1137-20121227|1933_1  62 AKRRQQQASLEEKmaERKHAATLDRPIYMTKRE--------------------REAAELEAKKEEEEIQQLMDEAERAQRQEYMQKVRDALRE 134
                 344444444444311233444445554444433....................3333334444444444444455555555555555554443 PP

  == domain 2    score: 12.2 bits;  conditional E-value: 1.4e-05
   TIGR00631 448 vttltkkmaedltdylkelgikvkylhseidtlerveiirdLrkgefdvlvGinLLreGlDlPevslvailDadkeGflrsersLiqtiGra 539
                 v    kk ++ l+  l+++g  ++ +hs  d   r   i+ ++ gef++lv  ++   G+D+  v  v   D  k+  + s +  i   Gra
  MMETSP1137-20121227|1933_1 638 VFCNGKKGCDVLARSLDKMGFPTAVIHSGKDQATREAAIEGFKSGEFEILVATDIAGRGIDIQGVEHVINYDMPKD--IESYTHRIGRTGRA 727
                 55556777788999999************************************************99987776543..34444444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (798 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       427  (0.104096); expected 82.0 (0.02)
Passed bias filter:                      186  (0.0453437); expected 82.0 (0.02)
Passed Vit filter:                        25  (0.00609459); expected 4.1 (0.001)
Passed Fwd filter:                         9  (0.00219405); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.78u 0.19s 00:00:00.97 Elapsed: 00:00:00.98
# Mc/sec: 1074.77
//
Query:       MMETSP1137-20121227|1934_1  [L=432]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (432 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       241  (0.0587518); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.15s 00:00:00.48 Elapsed: 00:00:00.48
# Mc/sec: 1187.90
//
Query:       MMETSP1137-20121227|1935_1  [L=242]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (242 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       362  (0.0882496); expected 82.0 (0.02)
Passed bias filter:                      199  (0.0485129); expected 82.0 (0.02)
Passed Vit filter:                        31  (0.00755729); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.20s 00:00:00.52 Elapsed: 00:00:00.41
# Mc/sec: 779.06
//
Query:       MMETSP1137-20121227|1936_1  [L=105]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (105 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        23  (0.00560702); expected 82.0 (0.02)
Passed bias filter:                       22  (0.00536324); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.25
# Mc/sec: 554.35
//
Query:       MMETSP1137-20121227|1937_1  [L=48]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (48 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        27  (0.00658216); expected 82.0 (0.02)
Passed bias filter:                       26  (0.00633837); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.12s 00:00:00.24 Elapsed: 00:00:00.24
# Mc/sec: 263.98
//
Query:       MMETSP1137-20121227|1938_1  [L=593]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (593 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        75  (0.0182838); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.17s 00:00:00.55 Elapsed: 00:00:00.50
# Mc/sec: 1565.39
//
Query:       MMETSP1137-20121227|1939_1  [L=49]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (49 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        53  (0.0129205); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.19s 00:00:00.30 Elapsed: 00:00:00.31
# Mc/sec: 208.63
//
Query:       MMETSP1137-20121227|1940_1  [L=71]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (71 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        42  (0.0102389); expected 82.0 (0.02)
Passed bias filter:                       40  (0.00975134); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.18s 00:00:00.30 Elapsed: 00:00:00.28
# Mc/sec: 334.69
//
Query:       MMETSP1137-20121227|1941_1  [L=308]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (308 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        99  (0.0241346); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.12s 00:00:00.37 Elapsed: 00:00:00.37
# Mc/sec: 1098.72
//
Query:       MMETSP1137-20121227|1942_1  [L=180]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0044   14.0   0.1     0.0058   13.6   0.0    1.1  1  TIGR01709 typeII_sec_gspL: general secretion pathway protein L


Domain annotation for each model (and alignments):
>> TIGR01709  typeII_sec_gspL: general secretion pathway protein L
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   0.0   1.4e-06    0.0058     239     290 ..      55     106 ..      41     117 .. 0.92

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 1.4e-06
   TIGR01709 239 rwrralalaavllvlllvgallqawqlsrqrdalaaqiaetyrqlfPetkkv 290
                 rw+  l+ ++++l+ +++g+ +  w++ rq+d+ +a+     +++ +e++k 
  MMETSP1137-20121227|1942_1  55 RWLWWLGTCLAILMFSTIGTTISVWRITRQEDDSRASRMHSMHSASSERAKA 106
                 899999*********************************9999999999886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (180 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       108  (0.0263286); expected 82.0 (0.02)
Passed bias filter:                       97  (0.023647); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.18u 0.17s 00:00:00.35 Elapsed: 00:00:00.37
# Mc/sec: 642.11
//
Query:       MMETSP1137-20121227|1943_1  [L=318]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.9e-13   45.7   0.0    1.1e-12   45.3   0.0    1.2  1  TIGR02160 PA_CoA_Oxy5: phenylacetate-CoA oxygenase/reductase, PaaK subunit
     0.0032   14.4   0.0     0.0044   14.0   0.0    1.1  1  TIGR02911 sulfite_red_B: sulfite reductase, subunit B


Domain annotation for each model (and alignments):
>> TIGR02160  PA_CoA_Oxy5: phenylacetate-CoA oxygenase/reductase, PaaK subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.3   0.0   5.2e-16   1.1e-12      50     188 ..       9     153 ..       1     163 [. 0.77

  Alignments for each domain:
  == domain 1    score: 45.3 bits;  conditional E-value: 5.2e-16
   TIGR02160  50 lrrsysicdavad.geirvavkki...eGGlfstwanee.iraGdtlevmaPqGrftskldaerakhyvavaaGsGitPilaivktvlaa.epkstftlvyanrrsasvmfaeeladlkdkypqrfallhvlsreereaellsGr 188
                 + +sys  + ++d g   + vk+    +GG + +++ +    +  tl +  P+   +s+  ++r +h  +vaaG+G++P++ +++  l++    + + l++ nr+ +++++ae+l dl+ ++p+rf+++h l+r + +   l+Gr
  MMETSP1137-20121227|1943_1   9 IEKSYSPVSLPSDaGFFDLLVKTYpprPGGGLGAFLCDLsAGETATLRLKPPREIHGSPDVVNRWQHVGLVAAGTGLAPLFQLARILLNDcRTLASVRLLFINRSPDDILMAEQLRDLQRQHPTRFSVVHSLTRPPADWTGLQGR 153
                 4567776666554144566677642225888888888742344456777777777777777888889999***************99976256699**************************************99999999988 PP

>> TIGR02911  sulfite_red_B: sulfite reductase, subunit B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.0   2.1e-06    0.0044     101     157 ..      75     131 ..      60     163 .. 0.87

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 2.1e-06
   TIGR02911 101 elvvvaggtgvapvkgvveyfaknskevkeldlivgfktredilfkedlaewkekin 157
                 ++ +va gtg+ap+  + + + ++ + + ++ l+   ++++dil+ e+l++ ++++ 
  MMETSP1137-20121227|1943_1  75 HVGLVAAGTGLAPLFQLARILLNDCRTLASVRLLFINRSPDDILMAEQLRDLQRQHP 131
                 456799*******************************************99888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (318 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        46  (0.011214); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.24u 0.18s 00:00:00.42 Elapsed: 00:00:00.44
# Mc/sec: 953.92
//
Query:       MMETSP1137-20121227|1944_1  [L=229]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (229 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       129  (0.0314481); expected 82.0 (0.02)
Passed bias filter:                       97  (0.023647); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.11s 00:00:00.33 Elapsed: 00:00:00.56
# Mc/sec: 539.74
//
Query:       MMETSP1137-20121227|1945_1  [L=505]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (505 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       115  (0.0280351); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.19s 00:00:00.54 Elapsed: 00:00:00.61
# Mc/sec: 1092.70
//
Query:       MMETSP1137-20121227|1946_1  [L=1180]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1180 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       126  (0.0307167); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.69u 0.15s 00:00:00.84 Elapsed: 00:00:00.85
# Mc/sec: 1832.32
//
Query:       MMETSP1137-20121227|1948_1  [L=244]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (244 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       180  (0.043881); expected 82.0 (0.02)
Passed bias filter:                      139  (0.0338859); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.17s 00:00:00.42 Elapsed: 00:00:00.62
# Mc/sec: 519.44
//
Query:       MMETSP1137-20121227|1949_1  [L=268]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (268 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        79  (0.0192589); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.17s 00:00:00.39 Elapsed: 00:00:00.27
# Mc/sec: 1310.11
//
Query:       MMETSP1137-20121227|1950_1  [L=320]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (320 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        54  (0.0131643); expected 82.0 (0.02)
Passed bias filter:                       40  (0.00975134); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.16s 00:00:00.39 Elapsed: 00:00:00.57
# Mc/sec: 728.22
//
Query:       MMETSP1137-20121227|1952_1  [L=396]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (396 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       120  (0.029254); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.17s 00:00:00.47 Elapsed: 00:00:00.34
# Mc/sec: 1537.28
//
Query:       MMETSP1137-20121227|1953_1  [L=154]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (154 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       121  (0.0294978); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.17s 00:00:00.37 Elapsed: 00:00:00.28
# Mc/sec: 725.94
//
Query:       MMETSP1137-20121227|1954_1  [L=934]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.66    6.8  19.2        1.2    6.0  13.3    1.5  1  TIGR01628 PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family


Domain annotation for each model (and alignments):
>> TIGR01628  PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0  13.3   0.00029       1.2     391     493 ..     270     377 ..     159     451 .. 0.55

  Alignments for each domain:
  == domain 1    score: 6.0 bits;  conditional E-value: 0.00029
   TIGR01628 391 vigaan.....isgrhqaaqqqavvtqavkqqlasqplnfkinqmmlstqnpskpeapnalaqlaqqrlqaqgrrnlnnr.nrnvlgnmnkkqqnaaskanqanvkaqp 493
                 + + an     +   + a+++++ ++ a + + +  p++ + n+++ + q++s++ +p++   +aq+ +q++ ++ + +    n+++nm+++ q+ ++++  + +  + 
  MMETSP1137-20121227|1954_1 270 MATNANiaaacLQQMEMAQRRHHTQHPAANDMQHAMPQHMPKNMPQAMAQSMSQNXKPKMQPGMAQH-MQQGMHQHMPQSiPPNMQQNMQQNMQQXMQQNLPHGIAHTV 377
                 2222221100011111222222222222233333333333333333333333333334422222222.34444444444444455555555555555554444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (934 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       136  (0.0331546); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.60u 0.15s 00:00:00.75 Elapsed: 00:00:00.53
# Mc/sec: 2326.00
//
Query:       MMETSP1137-20121227|1955_1  [L=461]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (461 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       173  (0.0421745); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.16s 00:00:00.50 Elapsed: 00:00:00.34
# Mc/sec: 1789.62
//
Query:       MMETSP1137-20121227|1957_1  [L=992]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (992 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       116  (0.0282789); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.57u 0.15s 00:00:00.72 Elapsed: 00:00:00.68
# Mc/sec: 1925.49
//
Query:       MMETSP1137-20121227|1959_1  [L=115]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (115 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       122  (0.0297416); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.14s 00:00:00.29 Elapsed: 00:00:00.28
# Mc/sec: 523.41
//
Query:       MMETSP1137-20121227|1960_1  [L=136]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (136 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        24  (0.0058508); expected 82.0 (0.02)
Passed bias filter:                       19  (0.00463189); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.15s 00:00:00.30 Elapsed: 00:00:00.80
# Mc/sec: 224.38
//
Query:       MMETSP1137-20121227|1961_1  [L=225]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (225 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       120  (0.029254); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.15s 00:00:00.37 Elapsed: 00:00:00.64
# Mc/sec: 464.02
//
Query:       MMETSP1137-20121227|1963_1  [L=121]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (121 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       324  (0.0789859); expected 82.0 (0.02)
Passed bias filter:                      208  (0.050707); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.13s 00:00:00.32 Elapsed: 00:00:00.32
# Mc/sec: 499.08
//
Query:       MMETSP1137-20121227|1964_1  [L=407]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (407 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       169  (0.0411994); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.16s 00:00:00.47 Elapsed: 00:00:00.87
# Mc/sec: 617.47
//
Query:       MMETSP1137-20121227|1966_1  [L=86]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (86 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.18s 00:00:00.32 Elapsed: 00:00:00.30
# Mc/sec: 378.37
//
Query:       MMETSP1137-20121227|1967_1  [L=214]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (214 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        34  (0.00828864); expected 82.0 (0.02)
Passed bias filter:                       33  (0.00804486); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.13s 00:00:00.31 Elapsed: 00:00:00.31
# Mc/sec: 911.15
//
Query:       MMETSP1137-20121227|1968_1  [L=163]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (163 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        63  (0.0153584); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.16s 00:00:00.33 Elapsed: 00:00:00.28
# Mc/sec: 741.87
//
Query:       MMETSP1137-20121227|1969_1  [L=624]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   2.3e-191  635.4   0.0   2.6e-191  635.2   0.0    1.0  1  TIGR02411 leuko_A4_hydro: leukotriene A-4 hydrolase/aminopeptidase
    2.9e-27   93.2   0.1    3.6e-27   92.8   0.1    1.1  1  TIGR02412 pepN_strep_liv: aminopeptidase N
      3e-19   66.5   0.0    4.8e-19   65.8   0.0    1.2  1  TIGR02414 pepN_proteo: aminopeptidase N


Domain annotation for each model (and alignments):
>> TIGR02411  leuko_A4_hydro: leukotriene A-4 hydrolase/aminopeptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  635.2   0.0  1.9e-194  2.6e-191      11     600 .]       3     620 ..       1     620 [. 0.91

  Alignments for each domain:
  == domain 1    score: 635.2 bits;  conditional E-value: 1.9e-194
   TIGR02411  11 vkvkktelnlkvdfdkkklaGsvtyklkske......enkek........lvLdtsyleikevtinglkadfeieerkealGsklkislpsetsknkelelkieyettdkctaLqflepeqtkGkkaPylfsqcqaiharsllPcfdtPsvkstydakvesp..lavllsglrket........skdegkylfkqkvPiPayLvalasGdLasapiGprssvysekvelekcqyefekdtekflkvaeelif.pyvWkkydllvlppsfPyGGmenPnltfatPtLiagdrsnvdviahelahsWsGnLvtnkswehfWLneGftvylerkivGaleGekerhfsaligwneLqesvktlkkdpeytkLvvdLkdndPddafssvPyekGsnlLfyleqllGGkaefdpflkaylkkfayksldtkqfkdvLyeyfkdkkkvdkldavdWetwlyseGlPpvkPkfdttLadecykLadkWvdaak.ddlsefn....akdikdlsseqlvlfLekllekkd...avalkeeaikklediyslaasknaevkfrlfkllikakleeelkelaellgtvgrmkfvrPiyrlLnay.vdkelaietfekfkdsyhpickalvekdL 600
                 ++ ++++l ++vdf++k+l+G + ++++  +      ++  k        +vLdt+ l+i+ v+++g++a f++ + ++ +G++lkisl  + + +  ++++i+yet+++++a q+l  e t+Gk++Pylf+qcqaih r+llPc+d P+ k++y+a+v +p   ++l+s++r  +           + ++ f+q+vP+PayL+a+a+G+Las+++Gprs v+se+  +++ ++ef  ++e+fl++aee+++ py+W++ydll lppsfPyGGmenP+ltf tPtLiagdrs++ v+ahe++hsW+GnL+tn++wehfWLneG+tv+ler+i  +++Ge    fs l    +Lqe+v   ++ +++tkLv  L+d+dPddafs +PyekG++++++l +++G  + f  ++ ay+ +f+ k+l+ ++fk +  ++     +  +l+avdW++wl+++G+Ppv+    +   + +++La +W   ++  d s       a   + +  +   +f+  l+ + d   + al+ e   ++++ y ++as+naev+fr+ +l+ik + + ++++++++l ++grmkfvrP++r+Lna+ +  ++a +tfe+   +yhpi+++++ +dL
  MMETSP1137-20121227|1969_1   3 FRCSRLQLLWHVDFERKVLRGCAEWTVQRSDgyaltgDS--KpkdvddatVVLDTKALKIEAVRVEGKPATFSLCDEHHVFGQALKISLRPAGQGDGPFQVSIDYETSPESSACQWLSAELTAGKEHPYLFTQCQAIHGRALLPCQDSPGAKFSYEASVTVPewATALMSARRGAApaaaakppDASTRVFAFHQPVPVPAYLFAIAVGHLASREVGPRSLVWSEPSMVDEVAHEFA-EVESFLQAAEEITGqPYIWGQYDLLCLPPSFPYGGMENPCLTFLTPTLIAGDRSLAGVVAHEVSHSWTGNLLTNHTWEHFWLNEGWTVWLERRIEAKMHGETWYAFSSLEANDSLQEAVSRYGDSHNFTKLVPTLRDIDPDDAFSCIPYEKGFQFIHFLGEVIG-SKAFPEYVTAYIGEFKMKTLTSDEFKAFTISWCGG--RGVDLSAVDWDEWLHAPGMPPVRLSLANVEGERAKELAAQWLRPQSeMDPSGCPegaaAGAPQGWRHQHWLVFFGCLSSEIDsepSHALSLERLLRMDEAYGFSASRNAEVRFRWXRLCIKLRADFIVPQVVDFLKSQGRMKFVRPLFRELNAWpEHAHVATQTFEEWGGNYHPIARKMLAQDL 620
                 6788999**************999998865422111112..133457778***************************************888888889****************************************************************9889*****98764445555433455678899******************************************9.************9648***************************************************************************************************************************************************9.889****************************9987..67899************************************98665445544321211566677877777889888877766555889999999************************************************************88999************************8 PP

>> TIGR02412  pepN_strep_liv: aminopeptidase N
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.8   0.1   2.7e-30   3.6e-27     117     451 ..     127     462 ..      47     482 .. 0.84

  Alignments for each domain:
  == domain 1    score: 92.8 bits;  conditional E-value: 2.7e-30
   TIGR02412 117 evYlytqfevadarrvfavFdqPDlKAsfelsvkaPedWtVisnsteee.......vtteeadrvwefeetPklstYltavaaGPyvsvqkeaesiplgiyaRkSlaeyldadaifditrqgldfyeekFgipyPfkkYDqvfv.PefnaGAmENaGlVtfaeefvfraevtdaeketrakvilHElAHmWFGdlVtmrWWddlWLnEsFAeymgalasaeateytdaWttfavqrKawaYeaD..qlpttHPivadvadleda..lsnfDgitYaKGASvLkqLvayvGeeaFlagvnayfkryafgnatLdDlid...sLakasgrdlsaWs.kaWLetaGvdvlkael 451
                 + Yl+tq+++   r +  + d P  K s+e sv++Pe W  +  s+++        ++++ ++rv+ f++  ++ +Yl+a+a+G   s + + +s+   +++  S+ + + ++  f    + l+  ee  g+py + +YD + + P f +G mEN+ + tf    +       a    +a v++HE+ H W G+l t + W+ +WLnE +  +++     ea  + ++W  f   + + + ++   +   +H  ++ v +l d+   + f  i Y+KG   ++ L   +G +aF + v+ay+ +++ +  t d++     s     g dlsa   ++WL+++G+  +++ l
  MMETSP1137-20121227|1969_1 127 HPYLFTQCQAIHGRALLPCQDSPGAKFSYEASVTVPE-WATALMSARRGaapaaaaKPPDASTRVFAFHQPVPVPAYLFAIAVGHLASREVGPRSL---VWSEPSMVDEVAHE--FAEVESFLQAAEEITGQPYIWGQYDLLCLpPSFPYGGMENP-CLTFLTPTLI------AGDRSLAGVVAHEVSHSWTGNLLTNHTWEHFWLNEGWTVWLERR--IEAKMHGETWYAFSSLEANDSLQEAvsRYGDSHNFTKLVPTLRDIdpDDAFSCIPYEKGFQFIHFLGEVIGSKAFPEYVTAYIGEFKMKTLTSDEFKAftiSWCGGRGVDLSAVDwDEWLHAPGMPPVRLSL 462
                 56**********************************7.7655555344357999989999************************999988888887...89*******99987..8888999******************9977368********9.5666554444......445689********************************999986..5778899******9988877776641145679*99999999998733589********************************999998887777665410034444455888743389******98776654 PP

>> TIGR02414  pepN_proteo: aminopeptidase N
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.8   0.0   3.5e-22   4.8e-19      34     446 ..      42     462 ..      34     484 .. 0.80

  Alignments for each domain:
  == domain 1    score: 65.8 bits;  conditional E-value: 3.5e-22
   TIGR02414  34 kkeeeakaelvldGeelkllsikldgkkla...edeyqlddesLtiasvpee....kftleieteikPeen..tsLeGLYksgg...lfctqCEaeGFRrityflDRPdvlskytvtieAdkkkypvlLsn..Gn.kieseeledg.rhlaeweDPfkkPsYLFAlvAGdlkvledkfitksgrevalevyveekkedkaefalesLkkamkwDEevfglEyDLdifmivAvd.dFnmGAmEnkgLniFnsklvLAdpetatDadyeriesviaHEYFHnwtGnRvtcRDWFqlslkEGltvfRdqefsadmtsr...avkRiedvkllrav.qFaEDagplaHPvrPesyveinnfytatvYekGaEviRmlktllGeeafrkgmdlYfkrhDGqavtvedfvaaledas...gkdle..qfkrWysqaGtPelevke 446
                 k+++ ++a++vld ++lk+  ++++gk+ +    de+++  + L+i+  p       f+++i  e +Pe+   + L+   ++g+    ++tqC a   R +    D P    +y+  ++  + +   l+s   G  + ++++ +d   ++  ++ P + P+YLFA+  G+l+  e        r+    v++e+   d++++ ++ ++  ++  Ee  g+ y   ++ +  +   F  G mEn  L    + +++A      D++   + +v+aHE  H wtGn +t   W  + l EG tv+ ++ + a m+ +   a   +e  + l+++     D+   +  v     ++ ++ +    YekG   i  l  ++G++af + +  Y+ ++  ++ t ++f a   +     g dl+   + +W +  G P ++++ 
  MMETSP1137-20121227|1969_1  42 KPKDVDDATVVLDTKALKIEAVRVEGKPATfslCDEHHVFGQALKISLRPAGqgdgPFQVSIDYETSPESSacQWLSAELTAGKehpYLFTQCQAIHGRALLPCQDSPGAKFSYEASVTVPEWAT-ALMSArrGAaPAAAAKPPDAsTRVFAFHQPVPVPAYLFAIAVGHLASREVG-----PRS---LVWSEPSMVDEVAHEFAEVESFLQAAEEITGQPYIWGQYDLLCLPpSFPYGGMENPCLTFL-TPTLIA-----GDRS---LAGVVAHEVSHSWTGNLLTNHTWEHFWLNEGWTVWLERRIEAKMHGEtwyAFSSLEANDSLQEAvSRYGDSHNFTKLVPTLRDIDPDDAFSCIPYEKGFQFIHFLGEVIGSKAFPEYVTAYIGEFKMKTLTSDEFKAFTISWCggrGVDLSavDWDEWLHAPGMPPVRLSL 462
                 556667778******************9762224699999******99987656678***********976224566544443312269******************************997655.55554234313445555555367789*******************876532.....233...49***************************************999538***********754.444444.....4544...5689*****************************************9944456666666667654144568888888777777788899**********************************************98765544334467765226899*******9998875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (624 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        75  (0.0182838); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.48u 0.20s 00:00:00.68 Elapsed: 00:00:00.68
# Mc/sec: 1211.19
//
Query:       MMETSP1137-20121227|1970_1  [L=609]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.3e-27   92.6   0.0    9.6e-22   75.3   0.0    3.1  2  TIGR03442 TIGR03442: TIGR03442 family protein
     0.0011   15.4   0.0     0.0016   14.8   0.0    1.2  1  TIGR01135 glmS: glutamine-fructose-6-phosphate transaminase (isomerizing)
     0.0075   13.5   0.0      0.011   12.9   0.0    1.2  1  TIGR01134 purF: amidophosphoribosyltransferase


Domain annotation for each model (and alignments):
>> TIGR03442  TIGR03442: TIGR03442 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.3   0.0     7e-25   9.6e-22       2     182 ..     161     361 ..     160     369 .. 0.78
   2 !   12.3   0.0   1.2e-05     0.017     186     242 ..     409     505 ..     401     512 .. 0.68

  Alignments for each domain:
  == domain 1    score: 75.3 bits;  conditional E-value: 7e-25
   TIGR03442   2 CRllaylGae.esladlllepehsLlvqsya....P.......remregllnADGfGvGwydsekdtvparyrstqPlWaDas.....laslaraveskcvlaavRsAtvgqavelsataPFadgrillsHnGvvdnfretlyrplrdrlddeeylaiegstDsellfallleelleqkk......kaleevlaevllilakla 182
                 CR++ay+G++  s  dll+ep h L + ++a    P        + r+   n DG+G+Gw +s+ + +p++ rs   + ++ +     + + ar  + +++ + +R  t     ++ ++ PF +g  l++HnG+v++f  +++++lrd l ++ ++ i g+tDse+ fal+ ++l++ ++        l+++++e++ +l++l+
  MMETSP1137-20121227|1970_1 161 CRMIAYQGEAaISAVDLLVEPAHNLARMAWAepviPavkvdaqTSLRNHQRNVDGWGIGWINSR-NRTPVHIRSPLSIVDERNrtttaFLHAAREAKGNTLFGHARACTD-NNTDTVNSHPFIMGPLLFMHNGAVAGFS-AFRQQLRDMLRPPILKLIGGHTDSEHAFALFANSLRQFESrssfssAELRRAMRETIETLNSLS 361
                 ********8625788***************85443333222112345556799*********99.889**********988772222245568999999*******8886.567999********************96.567******************************9987665322322346667777777776665 PP

  == domain 2    score: 12.3 bits;  conditional E-value: 1.2e-05
   TIGR03442 186 karlnllladGsrllAtrwad.......tLyvlkd.............................pesvivasEPldddp....eWqevPdrsllsvs 242
                  ++ln +++dG++++Atr+++       +Ly+++                                ++i asEPld d+     W+ v + +lls s
  MMETSP1137-20121227|1970_1 409 PSSLNFVVSDGTTIVATRYRSneceeppSLYYRRVaagagaanaagaavtltnarvhtadhhanTGGIIFASEPLDLDQaaldSWRLVGKDKLLSWS 505
                 5789****************99******777666544444444444444444455555666654667888888877664222247777777776665 PP

>> TIGR01135  glmS: glutamine-fructose-6-phosphate transaminase (isomerizing)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   1.2e-06    0.0016      60     150 ..     253     354 ..     239     360 .. 0.73

  Alignments for each domain:
  == domain 1    score: 14.8 bits;  conditional E-value: 1.2e-06
   TIGR01135  60 kelegkvgigHtRWaTHGkpteeNaHPHvdekgeiavvhNGiieNykelreelekkg.....vefkSdTDtEviahlieeelk........eeedlleavqkal 150
                 +e +g++  gH+R  T  +  ++N+HP +     +  +hNG +  +++ r++l+          +   TD+E    l++++l+        ++++l +a+++++
  MMETSP1137-20121227|1970_1 253 REAKGNTLFGHARACTDNNTDTVNSHPFIMGP--LLFMHNGAVAGFSAFRQQLRDMLrppilKLIGGHTDSEHAFALFANSLRqfesrssfSSAELRRAMRETI 354
                 567899999*******************9877..8***********9999999764211111234567888888888887777555444444455555555555 PP

>> TIGR01134  purF: amidophosphoribosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.9   0.0     8e-06     0.011      60     139 ..     253     336 ..     237     387 .. 0.78

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 8e-06
   TIGR01134  60 eklkgkvaagHvRYsTaGsskseeaqPlvvssavgglalaHNGnlvnaeelreeleeeg.....rkfntssDsevllallaee.e..e 139
                 ++ kg++  gH R  T  ++ + ++ P+++    g l   HNG +  ++++r++l+++      + +  ++Dse + al+a++ +  e
  MMETSP1137-20121227|1970_1 253 REAKGNTLFGHARACTDNNTDTVNSHPFIM----GPLLFMHNGAVAGFSAFRQQLRDMLrppilKLIGGHTDSEHAFALFANSlRqfE 336
                 33479999***********999*******7....33689**************99997644455567789999999999998644331 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (609 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        78  (0.0190151); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.42u 0.14s 00:00:00.56 Elapsed: 00:00:00.56
# Mc/sec: 1435.38
//
Query:       MMETSP1137-20121227|1971_1  [L=312]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (312 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        87  (0.0212092); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.17s 00:00:00.40 Elapsed: 00:00:00.36
# Mc/sec: 1143.91
//
Query:       MMETSP1137-20121227|1973_1  [L=406]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (406 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        87  (0.0212092); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.14s 00:00:00.43 Elapsed: 00:00:00.48
# Mc/sec: 1116.41
//
Query:       MMETSP1137-20121227|1974_1  [L=303]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (303 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        66  (0.0160897); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.15s 00:00:00.39 Elapsed: 00:00:00.30
# Mc/sec: 1333.09
//
Query:       MMETSP1137-20121227|1975_1  [L=217]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (217 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       113  (0.0275475); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.12s 00:00:00.32 Elapsed: 00:00:00.49
# Mc/sec: 584.52
//
Query:       MMETSP1137-20121227|1976_1  [L=450]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.024   11.1   0.0      0.031   10.8   0.0    1.2  1  TIGR02734 crtI_fam: phytoene desaturase


Domain annotation for each model (and alignments):
>> TIGR02734  crtI_fam: phytoene desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   7.5e-06     0.031      16     114 ..       1     110 [.       1     142 [. 0.67

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 7.5e-06
   TIGR02734  16 rLaaaGievtvlekrdkpGGRagv.leedGfrfDtGPtvitmPealeelf.....alvGkkledeveLvpld.PaYrlffedgkal.....dvkndqeeleaeiesfepgd 114
                 +L+++G+++ vle+ +++GGR     +  G     GP ++   ea ++l      +l G++ + + +Lv+ld P Y  + ++g++l     d  ++ +++++ +es++  d
  MMETSP1137-20121227|1976_1   1 QLQSNGHRTVVLEASTRVGGRVLNdTTLTGKPHELGPEFVHG-EAGNKLIelidrQLNGRNGKPAAQLVELDwPNYYYMGKEGTMLsacdaDQLQEFQAMHDSFESLSEPD 110
                 69*******************865156679999999988753.33333330002234567777777888887778877777766652111122233345666666665555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (450 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        47  (0.0114578); expected 82.0 (0.02)
Passed bias filter:                       42  (0.0102389); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.31u 0.14s 00:00:00.45 Elapsed: 00:00:00.45
# Mc/sec: 1319.89
//
Query:       MMETSP1137-20121227|1977_1  [L=449]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.6e-09   33.8   0.1    5.2e-09   33.2   0.1    1.2  1  TIGR03466 HpnA: hopanoid-associated sugar epimerase
     0.0012   15.7   0.1     0.0019   15.0   0.0    1.2  1  TIGR03589 PseB: UDP-N-acetylglucosamine 4,6-dehydratase
     0.0014   15.7   0.2     0.0022   15.1   0.1    1.2  1  TIGR03325 BphB_TodD: cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase
     0.0014   15.7   1.6     0.0022   15.1   1.1    1.2  1  TIGR01746 Thioester-redct: thioester reductase domain
     0.0045   13.9   0.1     0.0069   13.3   0.0    1.2  1  TIGR04180 EDH_00030: NAD dependent epimerase/dehydratase, LLPSF_EDH_00030 family
     0.0096   12.6   0.1      0.014   12.1   0.0    1.2  1  TIGR01179 galE: UDP-glucose 4-epimerase
  ------ inclusion threshold ------
      0.015   12.2   0.0      0.025   11.5   0.0    1.4  1  TIGR02685 pter_reduc_Leis: pteridine reductase
      0.017   12.5   0.0      0.044   11.2   0.0    1.7  2  TIGR01777 yfcH: TIGR01777 family protein
      0.023   11.3   0.0      0.036   10.7   0.0    1.2  1  TIGR02823 oxido_YhdH: putative quinone oxidoreductase, YhdH/YhfP family


Domain annotation for each model (and alignments):
>> TIGR03466  HpnA: hopanoid-associated sugar epimerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.2   0.1   1.2e-11   5.2e-09       3      75 ..     115     188 ..     113     216 .. 0.88

  Alignments for each domain:
  == domain 1    score: 33.2 bits;  conditional E-value: 1.2e-11
   TIGR03466   3 vlvtGatGFvGsavvrllleeGeevrvlvrktsdr.rnleeldvEiveGdlkdeaslkkalkGcealfHvAAdy 75 
                 vlv GatG +G  +vr+ll +G +v vlvr+ s +  n  +  v    Gd++d +sl +a++ +++++  A d 
  MMETSP1137-20121227|1977_1 115 VLVVGATGRLGRIIVRKLLMRGFRVAVLVRSLSTStLNTLGSGVSYSYGDMSDYRSLLDAMEDVDKVVFAARDA 188
                 89****************************998741466667788999*******************9999775 PP

>> TIGR03589  PseB: UDP-N-acetylglucosamine 4,6-dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   4.1e-06    0.0019       7      83 ..     115     186 ..     113     208 .. 0.79

  Alignments for each domain:
  == domain 1    score: 15.0 bits;  conditional E-value: 4.1e-06
   TIGR03589   7 ilitGgtGsfGkkfikkllekykvkkiiiysrdelkqfelqqkfeedklrffiGdvrdkerleraledvdlvvhaaa 83 
                 +l+ G+tG +G+  ++kll +    ++ +  r  l  ++l++    + + +  Gd+ d   l  a+edvd vv aa 
  MMETSP1137-20121227|1977_1 115 VLVVGATGRLGRIIVRKLLMRGF--RVAVLVRS-LSTSTLNTL--GSGVSYSYGDMSDYRSLLDAMEDVDKVVFAAR 186
                 799***************98764..45555553.455555443..3678999**********************984 PP

>> TIGR03325  BphB_TodD: cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.1   4.9e-06    0.0022       7      74 ..     114     182 ..     112     203 .. 0.77

  Alignments for each domain:
  == domain 1    score: 15.1 bits;  conditional E-value: 4.9e-06
   TIGR03325   7 vvlvtggasglgralvdrfvaegarvavldksaa..gleeleaahgdkvvgvegdvrllddhkeavarcv 74 
                 +vlv g +  lgr +v + +  g rvavl +s     l+ l +  +    g   d r+l d  e v++ v
  MMETSP1137-20121227|1977_1 114 LVLVVGATGRLGRIIVRKLLMRGFRVAVLVRSLStsTLNTLGSGVS-YSYGDMSDYRSLLDAMEDVDKVV 182
                 5899*************************99864115555554433.34566677888888888888777 PP

>> TIGR01746  Thioester-redct: thioester reductase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   1.1   4.8e-06    0.0022       2      36 ..     115     147 ..     114     159 .. 0.90

  Alignments for each domain:
  == domain 1    score: 15.1 bits;  conditional E-value: 4.8e-06
   TIGR01746   2 vlLTGAtGfLGaylleeLlrrsteakviClVRaks 36 
                 vl+ GAtG LG+ ++++Ll r    +v+ lVR+ s
  MMETSP1137-20121227|1977_1 115 VLVVGATGRLGRIIVRKLLMRG--FRVAVLVRSLS 147
                 9********************7..89******755 PP

>> TIGR04180  EDH_00030: NAD dependent epimerase/dehydratase, LLPSF_EDH_00030 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   0.0   1.5e-05    0.0069       1      77 [.     115     184 ..     115     187 .. 0.88

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 1.5e-05
   TIGR04180   1 vlvtGadGfiGshlvealvekGaevralvlynsfnswGwldevekevkkeievvlGdirdaesvkkavkgvdvvfhl 77 
                 vlv Ga G +G  +v +l+ +G++v  lv+  s+++    +++     + +    Gd+ d++s+ +a+++vd+v+  
  MMETSP1137-20121227|1977_1 115 VLVVGATGRLGRIIVRKLLMRGFRVAVLVRSLSTSTL---NTLG----SGVSYSYGDMSDYRSLLDAMEDVDKVVFA 184
                 89***************************99888764...4444....5678999*****************99865 PP

>> TIGR01179  galE: UDP-glucose 4-epimerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.1   0.0     3e-05     0.014       2      75 ..     115     182 ..     114     202 .. 0.78

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 3e-05
   TIGR01179   2 iLvtGgaGyiGshvvrqllekgkevvvl.Dnlskgskealkalekitevklvegdladkekleavleeekidavi 75 
                 +Lv+G++G +G  +vr+ll +g++v vl   ls+++ ++l  +      ++  gd++d ++l +++e  ++d v+
  MMETSP1137-20121227|1977_1 115 VLVVGATGRLGRIIVRKLLMRGFRVAVLvRSLSTSTLNTLGSGV-----SYSYGDMSDYRSLLDAME--DVDKVV 182
                 8***********************86652789999999998887.....577888888887776665..455555 PP

>> TIGR02685  pter_reduc_Leis: pteridine reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   5.4e-05     0.025       2      35 ..     113     146 ..     112     187 .. 0.73

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 5.4e-05
   TIGR02685   2 paalvtGaakriGrsiavklhqeGyrvvlhyrrs 35 
                 p  lv Ga+ r+Gr i  kl  +G+rv +  r  
  MMETSP1137-20121227|1977_1 113 PLVLVVGATGRLGRIIVRKLLMRGFRVAVLVRSL 146
                 8899***********************9977643 PP

>> TIGR01777  yfcH: TIGR01777 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   9.7e-05     0.044       1      36 [.     115     150 ..     115     187 .. 0.82
   2 ?   -2.2   0.0       1.2   5.4e+02     106     128 ..     396     418 ..     390     430 .. 0.69

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 9.7e-05
   TIGR01777   1 vlitGgtGliGralveelekkghevviltrskekek 36 
                 vl+ G+tG +Gr +v++l  +g +v +l+rs ++++
  MMETSP1137-20121227|1977_1 115 VLVVGATGRLGRIIVRKLLMRGFRVAVLVRSLSTST 150
                 799***************************988544 PP

  == domain 2    score: -2.2 bits;  conditional E-value: 1.2
   TIGR01777 106 vlisasavgyYgeseekelteee 128
                 + isa a++yY +++  +  e +
  MMETSP1137-20121227|1977_1 396 LSISAMAIAYYPQRNPPVKGEPA 418
                 56999******988766655555 PP

>> TIGR02823  oxido_YhdH: putative quinone oxidoreductase, YhdH/YhfP family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   7.9e-05     0.036     148     192 ..     114     157 ..      98     175 .. 0.87

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 7.9e-05
   TIGR02823 148 evlVtGAtGgVgslavalLsklGyevvavtgkkeeeeylkelGak 192
                  vlV GAtG  g + v+ L  +G++v av  ++ ++ +l++lG  
  MMETSP1137-20121227|1977_1 114 LVLVVGATGRLGRIIVRKLLMRGFRV-AVLVRSLSTSTLNTLGSG 157
                 59**********************97.678899999999999975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (449 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       104  (0.0253535); expected 82.0 (0.02)
Passed bias filter:                       96  (0.0234032); expected 82.0 (0.02)
Passed Vit filter:                        27  (0.00658216); expected 4.1 (0.001)
Passed Fwd filter:                         9  (0.00219405); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.38u 0.17s 00:00:00.55 Elapsed: 00:00:00.53
# Mc/sec: 1118.17
//
Query:       MMETSP1137-20121227|1978_1  [L=41]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (41 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        22  (0.00536324); expected 82.0 (0.02)
Passed bias filter:                       20  (0.00487567); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.14s 00:00:00.27 Elapsed: 00:00:00.33
# Mc/sec: 163.99
//
Query:       MMETSP1137-20121227|1979_1  [L=165]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (165 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        98  (0.0238908); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.17s 00:00:00.35 Elapsed: 00:00:00.38
# Mc/sec: 573.11
//
Query:       MMETSP1137-20121227|1980_1  [L=108]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (108 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        61  (0.0148708); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.14s 00:00:00.26 Elapsed: 00:00:00.27
# Mc/sec: 527.96
//
Query:       MMETSP1137-20121227|1982_1  [L=165]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (165 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       109  (0.0265724); expected 82.0 (0.02)
Passed bias filter:                      106  (0.0258411); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.16s 00:00:00.34 Elapsed: 00:00:00.42
# Mc/sec: 518.53
//
Query:       MMETSP1137-20121227|1983_1  [L=205]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (205 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        78  (0.0190151); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.12s 00:00:00.31 Elapsed: 00:00:00.32
# Mc/sec: 845.56
//
Query:       MMETSP1137-20121227|1985_1  [L=290]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (290 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        44  (0.0107265); expected 82.0 (0.02)
Passed bias filter:                       37  (0.00901999); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.15s 00:00:00.39 Elapsed: 00:00:00.33
# Mc/sec: 1159.90
//
Query:       MMETSP1137-20121227|1986_1  [L=508]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.2e-78  260.5  25.4    6.8e-78  260.1  17.6    1.1  1  TIGR00773 NhaA: Na+/H+ antiporter NhaA


Domain annotation for each model (and alignments):
>> TIGR00773  NhaA: Na+/H+ antiporter NhaA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  260.1  17.6   1.7e-81   6.8e-78       7     372 ..     128     492 ..     123     494 .. 0.93

  Alignments for each domain:
  == domain 1    score: 260.1 bits;  conditional E-value: 1.7e-81
   TIGR00773   7 aggillllaavlamvlans.alsesyqdlletpvslqvgsfvigkslllwindalmavfflliGlevkrelleGalsslkkaifpviaaiGGmivpaliylalnandpa.areGwaipaatdiafalGvlallgkrvplalkvfllalaiiddlGaiviialfytsdlsvaallvalvviavlallnrlevrklivyllvGvilwlavlksGvhatlagviigfaiplkekkgeks.....plkrlehvlapyvaylilplfafanaGvslegvsldlltskll.lgiilGlliGkplGiflfsfiavklklaklpeGinfkqilavgvlcGiGftmsifisslafgsvdeelielaklgillGslvsavlGys 372
                  g ++l+la+++++ lan+  +s ++  l+ tp++  +g++++  ++  win+almavff+l+Gle+k+el  G+l+++++a++p iaa+GGm+ p l+y++ ++  pa ++ G +ip+atdiafa+ ++ ++ +r+p +   fll+la +ddlGai+++a  +++ l    l  a+ ++a +  + r + + l ++   G+ lw ++l++Gv a +agv+ ++++  k   +  +      ++r    l p++a++i+plfa+an+ v l   + ++ ts  + +gi +Gll+GkplGif f+++av+ +++ +p G++ k++  vg+l GiGf +    +++a+ s   +++ l kl il  s +s+vlG++
  MMETSP1137-20121227|1986_1 128 LGSLVLILATIVSLSLANAgRTSAAWLGLWATPIGPAIGHHKL--TVRAWINEALMAVFFFLVGLEIKQELRLGSLATVRTAVLPCIAAVGGMLTPMLVYVIAQTLLPAgSMLGVTIPMATDIAFAMAIFGFFRNRMPASASAFLLTLATVDDLGAILVLATCFAQGLAPPFLAAAAAIVAAMTAIGRSKCNDLKIFSAGGISLWYCLLRAGVNADVAGVLAALCLSTKATMQTAAgkiesVAQRAIGRLVPLSAFFIMPLFALANTAVKLGAAANAGATSATPaIGIGAGLLLGKPLGIFGFTWLAVRCGMCSMPSGMSNKHLGIVGLLGGIGFXL----TEVALPS---SVQALPKLVILSASALSSVLGAL 492
                 6899***************899*****************9987..89********************************************************9999973678***************************************************************************************************************999998766553333335666677899*********************99999999988658*************************************************86....5677655...57788999999999999999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (508 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       166  (0.0404681); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.13s 00:00:00.47 Elapsed: 00:00:00.47
# Mc/sec: 1426.61
//
Query:       MMETSP1137-20121227|1987_1  [L=96]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (96 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        41  (0.00999512); expected 82.0 (0.02)
Passed bias filter:                       39  (0.00950756); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.15s 00:00:00.29 Elapsed: 00:00:00.24
# Mc/sec: 527.96
//
Query:       MMETSP1137-20121227|1988_1  [L=522]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   6.1e-112  372.3  31.5     7e-112  372.1  21.8    1.0  1  TIGR00836 amt: ammonium transporter
    1.2e-65  219.7  30.0    1.8e-61  206.0  19.2    2.0  2  TIGR03644 marine_trans_1: probable ammonium transporter, marine subtype


Domain annotation for each model (and alignments):
>> TIGR00836  amt: ammonium transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  372.1  21.8  3.4e-115    7e-112       1     406 []      65     488 ..      65     488 .. 0.93

  Alignments for each domain:
  == domain 1    score: 372.1 bits;  conditional E-value: 3.4e-115
   TIGR00836   1 dtawllvaaalVflmqpGlalLeaGlvrsknvlnillknlldlavvillyvllGyslafg.eeaetvngfiGtskfglknkvlkesskeelpelvfflfqlvFaaiaaaivsgavaeRikfsayllfsvllltlvyppvahwvwgtgGwlalklgvlDFAGstvVHlvgGvagLvaalvlGpRigrf...eseaikphnvplvvlGtflLwfGWfgFNaGSalaang....laalaavnTtlaaaagaltallieyl..kegkptvlgaingilaglvaitagagvvepwaalviGvvagvlvllavsklkkklkiDDpldvfavHgvaGiwGlilvglfaaekvvasagtagss..............llggnakqllvqligilvilvysfvvtliillilkkvigLRvseeeEklGlDlaehgesay 406
                 d +w+l+a +  f++q+G++lLeaG++r+kn+ ni+lknl+d++v+ ++y+l+Gy++a+g     t n f G ++ g+         +   +e+ +f+fq+vFaa+ a+ivsgavaeRi+f+ay+++s++l+++vyp+++hw+w+ +G+l+ k+gv+D+AG+++VH ++Gva++++al lGpRig+f   +++ +  hnv++++lG f+Lw+G++ FNaGS +  +g    ++a++av Ttl ++ g+ +all  +l  + g+ ++  a+ngilag+v++++ ++vv++wa ++  +  +v+v++++ kl  k+++DDpl++ a+H + G++Gli+vg+f+++ + + a++   +              ++ggn+ ql+ q++++l+ ++y +v+  ++++ +k+++ LRv+ee+E +GlDl++hg  ay
  MMETSP1137-20121227|1988_1  65 DHVWILSAGLFCFFLQAGFGLLEAGALRAKNAKNIMLKNLMDACVGGVVYYLFGYAFAYGsPGDGTGNAFSGGESSGYFM-----LVDVAGEEYYIFFFQYVFAATIATIVSGAVAERIQFKAYMIYSAVLTGIVYPICSHWIWSSDGFLN-KWGVIDYAGGGAVHALSGVAAFMGALALGPRIGKFvdgKPVDLAAHNVSMMALGVFILWLGFIPFNAGSGVGITGflttQTARIAVMTTLGGCSGGCVALLYGWLpwQMGHFSIEYAMNGILAGMVSVCSCCAVVKIWAVFWFIAPVAVVVYYGLLKLLLKIGVDDPLGASALHFGPGLVGLIAVGFFGEPGLTEGAYSFDYGtnrkhhseedfigiFYGGNGTQLGFQVVAALIFTAYGVVTCGLLFYGMKFAKILRVTEEDELMGLDLTHHGGPAY 488
                 789*********************************************************52334678888887444333.....2345678899*******************************************************9.***********************************************************************66666666999**********************855789*******************************9766666*******************************************9987665433334566899****************************************************************9998 PP

>> TIGR03644  marine_trans_1: probable ammonium transporter, marine subtype
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  206.0  19.2   8.7e-65   1.8e-61       4     342 ..      65     397 ..      62     407 .. 0.88
   2 !   14.2   0.0   1.5e-06    0.0031     346     402 ..     433     489 ..     424     491 .. 0.90

  Alignments for each domain:
  == domain 1    score: 206.0 bits;  conditional E-value: 8.7e-65
   TIGR03644   4 dtflflvsgalvmwmaaGfamleaGlvrskntteiltknvalfaiaaimyllvgynlmypgdalllegileafllaalesvadleagseedaayssasdfffqvvfvatamsivsGavaerlklwaflvfavvltaliyPvegswkwgg.GllselgfsdfaGsgivhlaGaaaalagvlllGarkGkygkdgevkaipgsnlplatlGtfilwlGwfGfnGgsqlalsdvedanavakifvntnaaaaaGaiaalllakllf..gkadltmvlnGalaGlvaitaePlaPsllaatliGavgGvlvvls.ivlldklkiddpvGaisvhgvaGifGllvvpl 342
                 d +++l +g++ +++ aGf +leaG +r+kn+ +i+ kn++  ++ +++y+l+gy+ +y + +   +g+ +af+  +++s   +  + +++ +y     fffq vf+at ++ivsGavaer+++ a++++++vlt+++yP+ ++w w++ G+l+++g  d+aG g vh+  ++aa+ g+l lG+r+Gk+  dg+   +++ n+++ +lG+filwlG+  fn gs + ++ +   ++ a+i v t +  ++G   all   l +  g   +   +nG laG+v++ +     + +a   + a   v+v  + ++ll k+ +ddp+Ga + h   G+ Gl++v +
  MMETSP1137-20121227|1988_1  65 DHVWILSAGLFCFFLQAGFGLLEAGALRAKNAKNIMLKNLMDACVGGVVYYLFGYAFAYGSPG---DGTGNAFSG-GESSGYFMLVDVAGEEYYI----FFFQYVFAATIATIVSGAVAERIQFKAYMIYSAVLTGIVYPICSHWIWSSdGFLNKWGVIDYAGGGAVHALSGVAAFMGALALGPRIGKF-VDGKPVDLAAHNVSMMALGVFILWLGFIPFNAGSGVGITGFLT-TQTARIAVMTTLGGCSGGCVALLYGWLPWqmGHFSIEYAMNGILAGMVSVCSCCAVVKIWAVFWFIAPVAVVVYYGlLKLLLKIGVDDPLGASALHFGPGLVGLIAVGF 397
                 66788999***************************************************7666...666544444.4444444567777888875....************************************************988***************************************.8999999*******************************99975.567999999999999999999***99998446778899************98777766666554444334444444256788************************987 PP

  == domain 2    score: 14.2 bits;  conditional E-value: 1.5e-06
   TIGR03644 346 dasfvaqligvvaifvfvfvaslivwailkavlGirvseeeeleGldlaelGleayp 402
                 ++++  q++++++ +++ +v+  ++++ +k+   +rv+ee+el+Gldl++ G  ay 
  MMETSP1137-20121227|1988_1 433 GTQLGFQVVAALIFTAYGVVTCGLLFYGMKFAKILRVTEEDELMGLDLTHHGGPAYY 489
                 56778899***999**************************************99996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (522 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       199  (0.0485129); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.14s 00:00:00.52 Elapsed: 00:00:00.52
# Mc/sec: 1324.97
//
Query:       MMETSP1137-20121227|1990_1  [L=233]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (233 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        89  (0.0216967); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.14s 00:00:00.33 Elapsed: 00:00:00.33
# Mc/sec: 931.92
//
Query:       MMETSP1137-20121227|1991_1  [L=181]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (181 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        64  (0.0156021); expected 82.0 (0.02)
Passed bias filter:                       44  (0.0107265); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.15s 00:00:00.32 Elapsed: 00:00:00.27
# Mc/sec: 884.82
//
Query:       MMETSP1137-20121227|1992_1  [L=150]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (150 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        53  (0.0129205); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.15s 00:00:00.30 Elapsed: 00:00:00.27
# Mc/sec: 733.27
//
Query:       MMETSP1137-20121227|1993_1  [L=1103]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00028   18.2   0.3     0.0016   15.7   0.0    2.2  3  TIGR02427 protocat_pcaD: 3-oxoadipate enol-lactonase
    0.00069   17.1   0.8     0.0017   15.9   0.5    1.6  1  TIGR01738 bioH: putative pimeloyl-BioC--CoA transferase BioH
     0.0021   15.4   0.0      0.011   13.0   0.0    2.1  2  TIGR03695 menH_SHCHC: 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase


Domain annotation for each model (and alignments):
>> TIGR02427  protocat_pcaD: 3-oxoadipate enol-lactonase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0      0.21   2.8e+02      29      62 ..     379     413 ..     377     446 .. 0.76
   2 !   15.7   0.0   1.1e-06    0.0016       8     111 ..     685     788 ..     682     798 .. 0.92
   3 ?   -3.7   0.0      0.96   1.3e+03      38      78 ..     880     918 ..     872     921 .. 0.71

  Alignments for each domain:
  == domain 1    score: -1.5 bits;  conditional E-value: 0.21
   TIGR02427  29 wdkvlealtkdfrvlryDkrGHGlS.dvpegpysi 62 
                 ++   ++l++++++ r D   HG+S  +++g+ + 
  MMETSP1137-20121227|1993_1 379 HERRRKRLQEQIAMARRDAAQHGSStGATAGDRAT 413
                 566778999999999********993344455444 PP

  == domain 2    score: 15.7 bits;  conditional E-value: 1.1e-06
   TIGR02427   8 gaeadkpvlvlinSLGtdlrlwdkvlealtkdfrvlryDkrGHGlSdvpegpysiedladdvlallDalgiekaavcGlSlGGliaqaLaarrpdrvealvlsn 111
                 g+ a++++lv+i  +G   + + + +++ +++ + + + + G  +  + ++p s   +a+ + + l + g+e+a+v+G SlG + a +   ++p +v++lvl++
  MMETSP1137-20121227|1993_1 685 GDGASRKALVFIHGIGVGPAPYLHFVQRAAREGAAVIVVELGAVAQRISAAPPSAPRFAQLLRQALRRHGLESAVVAGHSLGSAYAVYAHRHAPSLVSSLVLID 788
                 55668999***********9999999999999988888899************************************************************976 PP

  == domain 3    score: -3.7 bits;  conditional E-value: 0.96
   TIGR02427  38 kdfrvlryDkrGHGlSdvpegpysiedladdvlallDalgi 78 
                 + +rvl+++  GHG+  + e   + e la  + +l D+l +
  MMETSP1137-20121227|1993_1 880 RGVRVLALEGVGHGAWLANER--AREALAAAIRELRDTLTV 918
                 567889999999998766554..357777777777777765 PP

>> TIGR01738  bioH: putative pimeloyl-BioC--CoA transferase BioH
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.5   1.3e-06    0.0017       3     101 ..     689     792 ..     687     799 .. 0.83

  Alignments for each domain:
  == domain 1    score: 15.9 bits;  conditional E-value: 1.3e-06
   TIGR01738   3 gvkklvLihGWglnaevfadlvee.LsahftlslvDLPGyGdsaelralslaevae....ailaqapakaiwlGWsLGGLvalhlalthpdkvrsLvlvasspk 101
                 + k+lv ihG g+  + + + v++  ++   + +v+L    +     + s +  a+    a+  +  + a++ G sLG   a+++  + p  v+sLvl+   ++
  MMETSP1137-20121227|1993_1 689 SRKALVFIHGIGVGPAPYLHFVQRaAREGAAVIVVELGAVAQRISAAPPSAPRFAQllrqALRRHGLESAVVAGHSLGSAYAVYAHRHAPSLVSSLVLIDPIAC 792
                 6689**********99998887761577899*********99999999888888762222566666778*****************************988777 PP

>> TIGR03695  menH_SHCHC: 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   0.0   8.1e-06     0.011       2     101 ..     690     786 ..     689     789 .. 0.79
   2 ?   -1.2   0.0      0.17   2.3e+02      18      67 ..     872     919 ..     867     925 .. 0.75

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 8.1e-06
   TIGR03695   2 kpvlvlLHGflgskedwqal.ieeleekfsvlalDLpgHGkskslkekeakdfeeaaqellkelleklkiekviLvGYSlGGRialalaleaperleglil 101
                 +++lv++HG+    + + ++ +++ +e   v++++L   G+ ++  + ++ +  + aq l + l ++ + e++++ G SlG   a++++ +ap+ +++l+l
  MMETSP1137-20121227|1993_1 690 RKALVFIHGIGVGPAPYLHFvQRAAREGAAVIVVEL---GAVAQRISAAPPSAPRFAQLLRQALRRH-GLESAVVAGHSLGSAYAVYAHRHAPSLVSSLVL 786
                 5789*****966666665550555568899999999...5555555568899999999855555555.******************************998 PP

  == domain 2    score: -1.2 bits;  conditional E-value: 0.17
   TIGR03695  18 wqalieeleekfsvlalDLpgHGkskslkekeakdfeeaaqellkellek 67 
                 w++  ++  + ++vlal+ +gHG+  +  e++++++++a++el ++l+  
  MMETSP1137-20121227|1993_1 872 WDRPEAKA-RGVRVLALEGVGHGAWLAN-ERAREALAAAIRELRDTLTVT 919
                 55555555.88999999999***98877.668888888888888877765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1103 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        93  (0.0226719); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.65u 0.14s 00:00:00.79 Elapsed: 00:00:00.62
# Mc/sec: 2348.13
//
Query:       MMETSP1137-20121227|1994_1  [L=146]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (146 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        74  (0.01804); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.17s 00:00:00.34 Elapsed: 00:00:00.59
# Mc/sec: 326.62
//
Query:       MMETSP1137-20121227|1995_1  [L=265]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.4e-12   44.5   0.0    1.7e-05   21.9   0.0    2.3  2  TIGR00435 cysS: cysteine--tRNA ligase


Domain annotation for each model (and alignments):
>> TIGR00435  cysS: cysteine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   0.0   1.4e-08   5.5e-05     417     457 ..     123     163 ..     101     170 .. 0.89
   2 !   21.9   0.0   4.1e-09   1.7e-05     414     458 ..     191     235 ..     176     241 .. 0.86

  Alignments for each domain:
  == domain 1    score: 20.2 bits;  conditional E-value: 1.4e-08
   TIGR00435 417 elgeledlieersearkkkelkkaDkiRdellkkgivLeDt 457
                 +++ele+l+++r++ar ++++  aDk+R+ l  +g+ L+D 
  MMETSP1137-20121227|1995_1 123 SNDELEELVHHREQARAQRNFPFADKLRQCLRMQGVKLDDA 163
                 5679************************************8 PP

  == domain 2    score: 21.9 bits;  conditional E-value: 4.1e-09
   TIGR00435 414 nddelgeledlieersearkkkelkkaDkiRdellkkgivLeDtp 458
                 +  +++e+ ++i++r++ rk++++++aD++R  l ++g+ L+D++
  MMETSP1137-20121227|1995_1 191 EAPTDEEIINTIAQRENSRKQRDFANADALRTYLRSRGVNLDDRE 235
                 3347899************************************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (265 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       155  (0.0377864); expected 82.0 (0.02)
Passed bias filter:                      126  (0.0307167); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.26u 0.18s 00:00:00.44 Elapsed: 00:00:00.26
# Mc/sec: 1345.27
//
Query:       MMETSP1137-20121227|1996_1  [L=295]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.8e-44  148.2   0.0    7.4e-41  138.4   0.0    2.1  1  TIGR00322 diphth2_R: diphthamide biosynthesis enzyme Dph1/Dph2 domain
    5.8e-22   76.1   0.0    3.6e-14   50.5   0.0    2.1  2  TIGR03682 arCOG04112: diphthamide biosynthesis enzyme Dph2
    1.6e-08   31.5   0.0    1.6e-08   31.5   0.0    1.1  1  TIGR00272 DPH2: diphthamide biosynthesis protein 2


Domain annotation for each model (and alignments):
>> TIGR00322  diphth2_R: diphthamide biosynthesis enzyme Dph1/Dph2 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  138.4   0.0   5.4e-44   7.4e-41     142     320 .]       4     158 ..       1     158 [. 0.96

  Alignments for each domain:
  == domain 1    score: 138.4 bits;  conditional E-value: 5.4e-44
   TIGR00322 142 agyeeviipqlkprvlspgevlgctspaleadeedkvllfigdgrfhllglalatpkpkvyvydpysskleeeeseaerllrrRyaaiekakdakkvGIivgtlggqgrlelierlkellkkagkkaytilvgeinpakLanfpeiDafVvvaCprlslddskefekpvltpyEleial 320
                 a++  ++ipq kp  ls ge+lgct+p +++    +v++f++dgrfh++++++a+p+  +y+ydpy + l                    +k a+++G+++gtlg+qg+++++ +l+++l++ag +++t+l++e+ p+kLa+fpe+ a+V+v Cprls+d++++f +p+l+pyE+e+al
  MMETSP1137-20121227|1996_1   4 AHFAAATIPQCKP--LSAGETLGCTAPTIDNC---DVVVFVADGRFHPEAVMIANPSLPLYRYDPYGKAL-------------------TLKAASSWGLVLGTLGRQGNPDILFHLQQILRNAGVHFVTVLLSEVLPSKLAEFPEVGAWVQVCCPRLSIDWGHAFGAPLLSPYEAEVAL 158
                 5778899******..************99998...8899******************************9...................678999**********************************************************************************97 PP

>> TIGR03682  arCOG04112: diphthamide biosynthesis enzyme Dph2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.3   0.0   2.6e-09   3.5e-06     135     187 ..      16      67 ..       7      71 .. 0.88
   2 !   50.5   0.0   2.6e-17   3.6e-14     209     306 ..      70     171 ..      64     173 .. 0.93

  Alignments for each domain:
  == domain 1    score: 24.3 bits;  conditional E-value: 2.6e-09
   TIGR03682 135 vaapgqvLGCnfsaaksveadavlfvgtGkFhplglal.atkkeVvlvdplsgk 187
                    +g  LGC+   ++  ++d+v+fv++G+Fhp  + + ++  + + +dp+ + 
  MMETSP1137-20121227|1996_1  16 PLSAGETLGCTAPTID--NCDVVVFVADGRFHPEAVMIaNPSLPLYRYDPYGKA 67 
                 5678999********9..9*****************9977899*******9765 PP

  == domain 2    score: 50.5 bits;  conditional E-value: 2.6e-17
   TIGR03682 209 aldakkvgilvstkkGQlrkelaeelkklleekgkeallvlldeispdkllnl.eldavvvtaCPRiaiDdaerfkkpvltpeEleivlgkr...keyklde 306
                 ++ a+++g++++t   Q  +++  +l++ l+++g++ ++vll e+ p+kl ++ e+ a v + CPR++iD  + f  p+l+p+E+e++lg r    +y +d 
  MMETSP1137-20121227|1996_1  70 LKAASSWGLVLGTLGRQGNPDILFHLQQILRNAGVHFVTVLLSEVLPSKLAEFpEVGAWVQVCCPRLSIDWGHAFGAPLLSPYEAEVALGARqwlAQYPMDY 171
                 56899************************************************88***********************************997777888875 PP

>> TIGR00272  DPH2: diphthamide biosynthesis protein 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.5   0.0   1.2e-11   1.6e-08     277     376 ..      69     166 ..      45     272 .. 0.87

  Alignments for each domain:
  == domain 1    score: 31.5 bits;  conditional E-value: 1.2e-11
   TIGR00272 277 klrdagviGivvgtlgvdktreavnelrklikkagkkiYllavGkvnlvaklanfedidvfvllaCsessvidskefyrPivtpfelelaLseevtWaaD 376
                  l+ a   G+v+gtlg +   +++ +l++++++ag     +    v  + kla f ++  +v + C+  s+   + f  P+++p+e+e+aL     W a 
  MMETSP1137-20121227|1996_1  69 TLKAASSWGLVLGTLGRQGNPDILFHLQQILRNAGVHFVTVLLSEVL-PSKLAEFPEVGAWVQVCCPRLSIDWGHAFGAPLLSPYEAEVALGA-RQWLAQ 166
                 579999*****************************865555566665.7*********************98899999*************75.456554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (295 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        78  (0.0190151); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.27u 0.14s 00:00:00.41 Elapsed: 00:00:00.42
# Mc/sec: 927.07
//
Query:       MMETSP1137-20121227|1997_1  [L=172]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (172 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        50  (0.0121892); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.12s 00:00:00.29 Elapsed: 00:00:00.28
# Mc/sec: 782.83
//
Query:       MMETSP1137-20121227|1998_1  [L=782]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (782 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        64  (0.0156021); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.47u 0.18s 00:00:00.64 Elapsed: 00:00:00.51
# Mc/sec: 2023.83
//
Query:       MMETSP1137-20121227|1999_1  [L=413]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.3e-21   72.9   0.0    8.6e-21   72.4   0.0    1.1  1  TIGR01177 TIGR01177: TIGR01177 family protein
    3.6e-10   37.3   0.0    6.2e-10   36.6   0.0    1.3  1  TIGR01934 MenG_MenH_UbiE: ubiquinone/menaquinone biosynthesis methyltransferase
    1.5e-08   32.3   0.0    3.5e-08   31.1   0.0    1.5  2  TIGR02752 MenG_heptapren: 2-heptaprenyl-1,4-naphthoquinone methyltransferase
    4.9e-07   27.2   0.0    7.2e-07   26.6   0.0    1.1  1  TIGR03533 L3_gln_methyl: protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific
    1.2e-06   26.0   0.0    1.9e-06   25.4   0.0    1.2  1  TIGR03534 RF_mod_PrmC: protein-(glutamine-N5) methyltransferase, release factor-specific
    2.3e-05   21.4   0.0    3.4e-05   20.9   0.0    1.2  1  TIGR00536 hemK_fam: methyltransferase, HemK family
    0.00039   18.5   0.0    0.00074   17.6   0.0    1.4  1  TIGR02469 CbiT: precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit
     0.0025   15.5   0.0     0.0056   14.3   0.0    1.6  1  TIGR02072 BioC: biotin biosynthesis protein BioC
  ------ inclusion threshold ------
      0.014   12.6   0.0      0.028   11.6   0.0    1.5  2  TIGR00091 TIGR00091: tRNA (guanine-N(7)-)-methyltransferase


Domain annotation for each model (and alignments):
>> TIGR01177  TIGR01177: TIGR01177 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.4   0.0   1.9e-23   8.6e-21      87     299 ..      57     276 ..      37     298 .. 0.81

  Alignments for each domain:
  == domain 1    score: 72.4 bits;  conditional E-value: 1.9e-23
   TIGR01177  87 avrvrklkk......ksvdkarlekkigailkkk.glkvslskpdivvrvvitedkfllgrvleerdkeqFeerkpdrRpFfkPgslsPklaRalvNlarvkegdrvlDPfcGTGgilIEAgLlG..ikviglDidekmveGariNLehYgied...fkvkrldakklplrsesvdaiatDpPYgrstkaagekleeLyeksleeleevlkeeGlivvavpkkld 299
                 ++r r   k      + v + ++   +ga+  ++ g +v+l++ d++v     + +++l    ++r +    +    +Rp+++ g+++  +a  +  la +++g+ vlDP++G Gg++IEA+L    ++ +g+D   +  + a +N    g+++    +++++da +lplr+ +vdai+ D P+g+  + a+   ++Ly  ++ e+++v k  G +vv++ +k  
  MMETSP1137-20121227|1999_1  57 VIRFRASVKrggessRAVSSPQMAGWLGAVCAEHlGWRVDLKDFDLEVLLQWNDVQVVLECPISNRYRS--GDLPMSDRPYLR-GAMHGPVAWSIASLACIQPGQLVLDPMVGKGGLVIEAALAHprARFVGVDHSTEQLSVAAENACIAGPNAshrVELIQGDAIHLPLRDHTVDAIICDLPFGKRHTSAMG-IDRLYASAISEMARVAKI-GATVVLFSTKKA 276
                 444443333333445678888888899999877626******999998888888777777777777777..888899*****9.99**99*********************************8544999****************9999888876788899************************9998888.9**************999.667777666533 PP

>> TIGR01934  MenG_MenH_UbiE: ubiquinone/menaquinone biosynthesis methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.6   0.0   1.4e-12   6.2e-10      35     146 ..     152     275 ..     142     285 .. 0.82

  Alignments for each domain:
  == domain 1    score: 36.6 bits;  conditional E-value: 1.4e-12
   TIGR01934  35 ieeekeekvlDvatGtGdlaielakkae.akvtgvDlseemLevakkkakek...eeanvefieadaeeLpfednsfdavti..afGlRNvtd......iekaLkelaRVlkpggrlvilefsk 146
                 +  + ++ vlD   G G l+ie a + + a+ +gvD s+e L va++ a      ++++ve i++da +Lp++d+++da+ +   fG R ++       ++ a++e+aRV k g+++v+  + k
  MMETSP1137-20121227|1999_1 152 ACIQPGQLVLDPMVGKGGLVIEAALAHPrARFVGVDHSTEQLSVAAENACIAgpnASHRVELIQGDAIHLPLRDHTVDAIICdlPFGKRHTSAmgidrlYASAISEMARVAKIGATVVLFSTKK 275
                 44556999***************999999***************999865444667889*******************9865227****9986333334689***********99998876554 PP

>> TIGR02752  MenG_heptapren: 2-heptaprenyl-1,4-naphthoquinone methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0       1.7   7.9e+02     215     231 .]      78      94 ..      73      94 .. 0.82
   2 !   31.1   0.0   7.6e-11   3.5e-08      43     155 ..     154     276 ..     144     284 .. 0.81

  Alignments for each domain:
  == domain 1    score: -2.8 bits;  conditional E-value: 1.7
   TIGR02752 215 kvksytggvaamhlglk 231
                 ++  + g v+a hlg++
  MMETSP1137-20121227|1999_1  78 QMAGWLGAVCAEHLGWR 94 
                 67778899*******85 PP

  == domain 2    score: 31.1 bits;  conditional E-value: 7.6e-11
   TIGR02752  43 vqkgkkaldvccgtadwaialaeavgkegevkgldfsenmlsvgkekvk...daklenvelvhgnamelpyednsfdyvt..igfglrnvpd......ylqvlkemarvvkpggkvvcletsqp 155
                 +q g+ +ld   g +   i  a a  ++ + +g+d s + lsv+ e       +  ++vel+ g+a++lp  d++ d +   + fg r          y + + emarv+k g  vv + t + 
  MMETSP1137-20121227|1999_1 154 IQPGQLVLDPMVGKGGLVIEAALA-HPRARFVGVDHSTEQLSVAAENACiagPNASHRVELIQGDAIHLPLRDHTVDAIIcdLPFGKRHTSAmgidrlYASAISEMARVAKIGATVVLFSTKKA 276
                 789999*******99998886655.688999************998764111456789*******************88622689***97633333558899***************9999765 PP

>> TIGR03533  L3_gln_methyl: protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.6   0.0   1.6e-09   7.2e-07     123     202 ..     158     240 ..     147     250 .. 0.88

  Alignments for each domain:
  == domain 1    score: 26.6 bits;  conditional E-value: 1.6e-09
   TIGR03533 123 krvldlctGsGClaiaaaeafpeaevdavDisedaLevaeen..ieeyeledrveliqsdlfe.alegkkydlivsnPPYvda 202
                 + vld   G G l i aa a+p+a+   vD s++ L+va+en  i+  + ++rveliq+d  +  l++++ d i+++ P+ ++
  MMETSP1137-20121227|1999_1 158 QLVLDPMVGKGGLVIEAALAHPRARFVGVDHSTEQLSVAAENacIAGPNASHRVELIQGDAIHlPLRDHTVDAIICDLPFGKR 240
                 5699999**********************************966788899**********7553899*********9998655 PP

>> TIGR03534  RF_mod_PrmC: protein-(glutamine-N5) methyltransferase, release factor-specific
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.4   0.0   4.2e-09   1.9e-06      88     166 ..     158     237 ..     144     245 .. 0.86

  Alignments for each domain:
  == domain 1    score: 25.4 bits;  conditional E-value: 4.2e-09
   TIGR03534  88 eklkvlDlgtGsGaIalalakelpdakviavDiseeAlkvarkNakrlglke...veflksdllealeekgkfdlivsNPPY 166
                 +   vlD   G G + +  a   p+a++++vD s+e l+va++Na   g ++   ve++++d ++   +++++d i++  P+
  MMETSP1137-20121227|1999_1 158 Q--LVLDPMVGKGGLVIEAALAHPRARFVGVDHSTEQLSVAAENACIAGPNAshrVELIQGDAIHLPLRDHTVDAIICDLPF 237
                 3..79999999**99999999**************************99998899*******975445999*******9886 PP

>> TIGR00536  hemK_fam: methyltransferase, HemK family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   0.0   7.4e-08   3.4e-05     114     188 ..     156     233 ..     144     243 .. 0.81

  Alignments for each domain:
  == domain 1    score: 20.9 bits;  conditional E-value: 7.4e-08
   TIGR00536 114 plkhilDlgtGsGcIalalAleipnaeviavDistdalavaeeNa..eklkleerveliqsnlle.slakqkidlivs 188
                 p + +lD  +G G   +  Al+ p a + +vD st+ l+va eNa     ++++rveliq++  + +l  + +d i+ 
  MMETSP1137-20121227|1999_1 156 PGQLVLDPMVGKGGLVIEAALAHPRARFVGVDHSTEQLSVAAENAciAGPNASHRVELIQGDAIHlPLRDHTVDAIIC 233
                 456799**************************************8224557899******996541555557777775 PP

>> TIGR02469  CbiT: precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.0   1.6e-06   0.00074      16      93 ..     153     232 ..     145     241 .. 0.83

  Alignments for each domain:
  == domain 1    score: 17.6 bits;  conditional E-value: 1.6e-06
   TIGR02469  16 rlkkgdvllDiGaGtGsvtieaarlvpkgrvyaierneealelieeNlrrf...gvsnieivegdapkaeedsleeadavf 93 
                  +++g+ +lD   G G + ieaa ++p+ r ++++ + e+l++  eN+      + +++e+++gda + +   ++ +da++
  MMETSP1137-20121227|1999_1 153 CIQPGQLVLDPMVGKGGLVIEAALAHPRARFVGVDHSTEQLSVAAENACIAgpnASHRVELIQGDAIHLPLR-DHTVDAII 232
                 4788899999999**********************************8654233677899999998866655.67788876 PP

>> TIGR02072  BioC: biotin biosynthesis protein BioC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.0   1.2e-05    0.0056      38     105 ..     160     235 ..     150     276 .. 0.85

  Alignments for each domain:
  == domain 1    score: 14.3 bits;  conditional E-value: 1.2e-05
   TIGR02072  38 vLdiGcGtGiltrallkrfpqaelialDiseemleqakkkls........nvqficgdieklplekksfDlivSnl 105
                 vLd   G G l  + +  +p a+++ +D s e+l++a ++          +v+ i+gd+ +lpl+++++D i++ l
  MMETSP1137-20121227|1999_1 160 VLDPMVGKGGLVIEAALAHPRARFVGVDHSTEQLSVAAENACiagpnashRVELIQGDAIHLPLRDHTVDAIICDL 235
                 5666667777777778889999****************9998999***************************9865 PP

>> TIGR00091  TIGR00091: tRNA (guanine-N(7)-)-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   6.2e-05     0.028      19      78 ..     159     221 ..     152     237 .. 0.83
   2 ?   -3.8   0.0       3.2   1.4e+03     140     161 ..     378     399 ..     376     403 .. 0.79

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 6.2e-05
   TIGR00091  19 lvleiGcGkGrfliklAkqnpeknflGiEi..ekpivlkainkaeklglk.Nlkvlcgdakkl 78 
                 lvl+  +GkG ++i+ A ++p   f+G+    e+ +v++ ++ +   +++  +++++gda +l
  MMETSP1137-20121227|1999_1 159 LVLDPMVGKGGLVIEAALAHPRARFVGVDHstEQLSVAAENACIAGPNAShRVELIQGDAIHL 221
                 6667778*********************98556777888888887777777899999999766 PP

  == domain 2    score: -3.8 bits;  conditional E-value: 3.2
   TIGR00091 140 dmlkvlsendlfeeiskeadln 161
                 + lkv ++n+ f+ +  e+dln
  MMETSP1137-20121227|1999_1 378 HNLKVQQQNQSFVAVASEPDLN 399
                 5688888888999988888887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (413 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       113  (0.0275475); expected 82.0 (0.02)
Passed bias filter:                      104  (0.0253535); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         9  (0.00219405); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.34u 0.13s 00:00:00.47 Elapsed: 00:00:00.42
# Mc/sec: 1297.89
//
Query:       MMETSP1137-20121227|2000_1  [L=752]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     3e-219  728.3   0.5   7.1e-219  727.0   0.3    1.5  1  TIGR00763 lon: ATP-dependent protease La
    6.8e-11   38.9   0.8    1.6e-10   37.6   0.0    2.0  2  TIGR02639 ClpA: ATP-dependent Clp protease ATP-binding subunit ClpA
    1.8e-06   24.8   4.9    2.2e-05   21.2   0.1    2.4  2  TIGR01241 FtsH_fam: ATP-dependent metallopeptidase HflB
      5e-05   20.3   0.0    0.00016   18.7   0.0    1.8  1  TIGR00635 ruvB: Holliday junction DNA helicase RuvB
    0.00034   17.5   0.0     0.0027   14.6   0.0    2.3  2  TIGR00382 clpX: ATP-dependent Clp protease, ATP-binding subunit ClpX
    0.00051   16.3   0.0    0.00092   15.4   0.0    1.3  1  TIGR01243 CDC48: AAA family ATPase, CDC48 subfamily
     0.0012   16.7   1.5     0.0049   14.7   0.0    2.6  3  TIGR02173 cyt_kin_arch: putative cytidylate kinase
     0.0029   14.7   0.2     0.0029   14.7   0.1    2.6  3  TIGR02397 dnaX_nterm: DNA polymerase III, subunit gamma and tau
      0.005   13.3   2.0     0.0063   12.9   0.0    2.0  2  TIGR03922 T7SS_EccA: type VII secretion AAA-ATPase EccA
  ------ inclusion threshold ------
        1.6    6.5  15.2       0.47    8.2   7.1    2.5  2  TIGR03499 FlhF: flagellar biosynthesis protein FlhF


Domain annotation for each model (and alignments):
>> TIGR00763  lon: ATP-dependent protease La
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  727.0   0.3  1.7e-221  7.1e-219       2     581 ..     143     731 ..     142     748 .. 0.93

  Alignments for each domain:
  == domain 1    score: 727.0 bits;  conditional E-value: 1.7e-221
   TIGR00763   2 llpvrrkvlfPgfilkivvkdeksiklikealkkkqkyllaflkkdkeeeedvieeeedvykvgvlaqilelvklkdekskketlkvvleglrrikikelvekeevlvvkveelkeeelekdd.....eevkalseeiletlkeliklsklfreqvetlkalekleepakladlvaaslelkeveekqevleevnvekRLkkvlellkkelelaklqekiakkveeklekeqreylLkeqlkaikkElGeekdkkdelieklkekleelklpeev...........lkviekeleklelleasssefsvtrnYldwltdlPwgkvskenldlkrakeiLdedHyglkkvKeRilEylavkklrkklkgkilclvGPPGVGKtSlaksiAkalnrkfvrlslGGlkDvaeikGHRrtYvGalPGkiiqglkkvktenPlillDEiDKlgssvrGdPasaLLEvLDpeqNakFlDhYldvpiDlskVlfvataNsidtiPepLldRmEvielsgYveeeKleiakkyLipkaleeaglkkeeveisdealkelikkYtreaGVRnLekqiekilRkaalklveekekkkeaeeekeea 581
                 ++p+++++lfPg++++ +v+d ++++++ +a+ ++++y+++fl k + +++  +++ ++v++vg+la+i    +     ++ + l+++l g +rik+++ v++ +v++++vee k+  +e +d     +  ka s+e+++t+ke++kl+++f+eq++++ + ++++e+ klad+ aa ++ ++ +  qevl +++v++R++k+l llkkelel+klq++i+k+v+ek++ +qr+ylL+eqlk+ikkElG ekd+k++l++k++e++ +l++p+e+           +kvi++e++kl+ le+ss+ef+vtrnYldwlt lPwg +sken++lkra+++L edHygl+++K+RilE++av+ l ++++gki+c+vGPPGVGKtS++ksiAkalnr+f r+s+GGl+DvaeikGHRrtYvGa+PGk+iq+lk  +t+nP++l+DEiDKlg++++GdPasaLLEvLDp qN++FlDhYldvp+DlskVlf++taN+ dtiP pLldRmEv++lsgY+ +eK+ ia++yL p+a++++gl+ +++e++++a++ li+ Y+reaGVRnL+k+ieki+Rk+alk+v++++++ e    + e+
  MMETSP1137-20121227|2000_1 143 IFPFPTRPLFPGVYQPCEVTDAALVEALVTAKASSHPYVGVFLPKPEFSDQASLTDPTQVHSVGTLASIGGSRR-----RRAAYLQLLLLGGKRIKLHRAVQTIPVMMARVEEAKDVVTEVEDagegpQLAKAYSMEVMQTIKEILKLNPFFKEQMQMILERSEIHEAGKLADFGAALTT-ADAQSLQEVLGTLDVTERIEKTLLLLKKELELSKLQSQISKQVDEKISSNQRRYLLMEQLKQIKKELGLEKDDKEALVTKFSERIATLQVPAEAkkvidexxaeaKKVIDEEIQKLQSLESSSTEFNVTRNYLDWLTALPWGIYSKENFKLKRAQKVLAEDHYGLDDIKDRILEFIAVSALCGSTQGKIICFVGPPGVGKTSIGKSIAKALNREFYRFSVGGLTDVAEIKGHRRTYVGAMPGKLIQCLKASGTANPVVLIDEIDKLGRGYQGDPASALLEVLDPSQNSSFLDHYLDVPVDLSKVLFLCTANVSDTIPGPLLDRMEVVRLSGYILDEKVXIARRYLEPTARQQMGLSADHMELTQDAIS-LIRWYCREAGVRNLQKHIEKICRKVALKVVQNSQERDEDAAPEAEI 731
                 68999****************************************************************98887.....455899*****************************976666655222224579*********************************************999.67**************************************************************************************98876511111111111567789***************************************************************************************************************************************************************************************************************************************************************95.89****************************9977666333333333 PP

>> TIGR02639  ClpA: ATP-dependent Clp protease ATP-binding subunit ClpA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.6   0.0     4e-13   1.6e-10     386     583 ..     400     602 ..     341     633 .. 0.73
   2 ?   -2.0   0.0       0.4   1.6e+02     678     712 ..     676     708 ..     653     716 .. 0.80

  Alignments for each domain:
  == domain 1    score: 37.6 bits;  conditional E-value: 4e-13
   TIGR02639 386 kyindrfLPDkaiDviDeaGaalr..lkekakkkakvsvkdie.....evvakiakipeksvssddkekLknlekeLkkkifGqdeaiealvkaikrsraGlkeenkPvgsflfvGptGvGktelakqLaeelgvellrfDmseymekhtvsrliGsPpGyvGfeeGGlLteavrk..nPyavlLlDeieka....hpDilnilLqvmDya 583
                   i    +P  a  viDe  a ++  + e+ +k ++++ +  e     + +  ++ +p   + s+++ kLk  +k L +  +G d+  +++ + i  s    +++ k      fvGp GvGkt + k++a++l+ e+ rf +   ++   v+ + G    yvG   G +L ++++   + + v+L+Dei+k       D  + lL v+D +
  MMETSP1137-20121227|2000_1 400 ERIATLQVPAEAKKVIDEXXAEAKkvIDEEIQKLQSLESSSTEfnvtrNYLDWLTALPW-GIYSKENFKLKRAQKVLAEDHYGLDDIKDRILEFIAVSALCGSTQGKI---ICFVGPPGVGKTSIGKSIAKALNREFYRFSVGGLTD---VAEIKGHRRTYVGAMPG-KLIQCLKAsgTANPVVLIDEIDKLgrgyQGDPASALLEVLDPS 602
                 34566678888999999987766522555555555655555441111134444666654.56678899***************************9987665666554...579****************************99876...9************8766.56666665116788********962222458888899998854 PP

  == domain 2    score: -2.0 bits;  conditional E-value: 0.4
   TIGR02639 678 eleleddaikylaekgydeefGarelkrvieeeik 712
                 ++el++dai+++  + y +e G+r+l++ ie+  +
  MMETSP1137-20121227|2000_1 676 HMELTQDAISLI--RWYCREAGVRNLQKHIEKICR 708
                 688999999988..6799**********9987554 PP

>> TIGR01241  FtsH_fam: ATP-dependent metallopeptidase HflB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.6   0.9    0.0061       2.5     433     479 ..     392     439 ..     323     449 .. 0.85
   2 !   21.2   0.1   5.4e-08   2.2e-05      43     163 ..     464     586 ..     459     594 .. 0.71

  Alignments for each domain:
  == domain 1    score: 4.6 bits;  conditional E-value: 0.0061
   TIGR01241 433 lkkekeyseetak.eiDeevkriieeaykkakeilkekkeelellake 479
                  +   ++se++a+ ++ +e k++i+e   +ak+++ e+ ++l+ l ++
  MMETSP1137-20121227|2000_1 392 EALVTKFSERIATlQVPAEAKKVIDEXXAEAKKVIDEEIQKLQSLESS 439
                 3556789999997589**************************998765 PP

  == domain 2    score: 21.2 bits;  conditional E-value: 5.4e-08
   TIGR01241  43 aklleeekvkvtfkdvaGideakeelveivdfLknpkkftklGakiPkGvllvGpPGtGktLlakavaGeagvpffsisGsdfvem.........fvGvGasrvrDlfeqakknaPciifiDeiDavGrk 163
                  ++  +  +kv  +d  G+d+ k+ ++e++         +  G+   k + +vGpPG+Gkt + k++a   ++ f++ s   + ++         +vG    ++   + +a  +a  +++iDeiD +Gr 
  MMETSP1137-20121227|2000_1 464 ENFKLKRAQKVLAEDHYGLDDIKDRILEFIAVS------ALCGSTQGKIICFVGPPGVGKTSIGKSIAKALNREFYRFSVGGLTDVaeikghrrtYVGAMPGKLIQCL-KASGTANPVVLIDEIDKLGRG 586
                 555566678888888889999998888877542......456888889999************************877655444431112222224444334444444.56667777999********85 PP

>> TIGR00635  ruvB: Holliday junction DNA helicase RuvB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.0   3.8e-07   0.00016       4      60 ..     477     534 ..     474     552 .. 0.80

  Alignments for each domain:
  == domain 1    score: 18.7 bits;  conditional E-value: 3.8e-07
   TIGR00635   4 eefiGqekvkeklqlfikaakkrkealdh.vllyGPPGlGkttlakiiakelgvklki 60 
                 e++ G +++k+++  fi  +     +    + ++GPPG+Gkt++ k iak l+ +   
  MMETSP1137-20121227|2000_1 477 EDHYGLDDIKDRILEFIAVSALCGSTQGKiICFVGPPGVGKTSIGKSIAKALNREFYR 534
                 6788999999999888888877776666615689******************988655 PP

>> TIGR00382  clpX: ATP-dependent Clp protease, ATP-binding subunit ClpX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.0   6.6e-06    0.0027     120     197 ..     507     586 ..     496     594 .. 0.80
   2 ?   -0.7   0.0      0.28   1.2e+02     345     391 ..     672     716 ..     654     735 .. 0.79

  Alignments for each domain:
  == domain 1    score: 14.6 bits;  conditional E-value: 6.6e-06
   TIGR00382 120 illiGptGsGktllaqtlakeldvpf...aiadattltea.GyvGedvenillkllqaadydvekaekGiiyideidkiark 197
                 i ++Gp G Gkt + +++ak l+  f   ++   t ++e  G+    v  +  kl+q  +   + + + ++ ideidk+ r 
  MMETSP1137-20121227|2000_1 507 ICFVGPPGVGKTSIGKSIAKALNREFyrfSVGGLTDVAEIkGHRRTYVGAMPGKLIQCLK--ASGTANPVVLIDEIDKLGRG 586
                 789********************8761115666666666347777789999999999865..5678899*********9985 PP

  == domain 2    score: -0.7 bits;  conditional E-value: 0.28
   TIGR00382 345 ldevelefeeealkaiakkalerktGarglrsiveellldvmfelps 391
                 l   ++e++++a++ i      r++G r l+  +e+++  v  ++ +
  MMETSP1137-20121227|2000_1 672 LSADHMELTQDAISLIR--WYCREAGVRNLQKHIEKICRKVALKVVQ 716
                 44455667788888774..567999************9999877654 PP

>> TIGR01243  CDC48: AAA family ATPase, CDC48 subfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   2.2e-06   0.00092     208     283 ..     500     583 ..     463     589 .. 0.74

  Alignments for each domain:
  == domain 1    score: 15.4 bits;  conditional E-value: 2.2e-06
   TIGR01243 208 gieppkgvllygppgtgktllakavaneagayfi..aing....peims...kyygeseerlreifkeaeenapsiifideidai 283
                 g    k + ++gppg gkt + k++a   +  f+  ++ g     ei      y+g    +l + +k +   a  +++ideid +
  MMETSP1137-20121227|2000_1 500 GSTQGKIICFVGPPGVGKTSIGKSIAKALNREFYrfSVGGltdvAEIKGhrrTYVGAMPGKLIQCLKAS-GTANPVVLIDEIDKL 583
                 5566788999********************9998334445333357754222699*******9999865.56666899****975 PP

>> TIGR02173  cyt_kin_arch: putative cytidylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0      0.97     4e+02      47      67 ..     346     366 ..     315     377 .. 0.67
   2 ?   -1.6   0.0       1.2   4.9e+02      45      72 ..     414     442 ..     408     457 .. 0.75
   3 !   14.7   0.0   1.2e-05    0.0049       2      42 ..     506     548 ..     505     551 .. 0.84

  Alignments for each domain:
  == domain 1    score: -1.2 bits;  conditional E-value: 0.97
   TIGR02173  47 eskkaeeekeiDkkiDrkike 67 
                 e++  + + +i k++D+ki  
  MMETSP1137-20121227|2000_1 346 ELELSKLQSQISKQVDEKISS 366
                 445555566677777766653 PP

  == domain 2    score: -1.6 bits;  conditional E-value: 1.2
   TIGR02173  45 laeskkaeeekeiDkkiDrkik.eiaeke 72 
                 ++++  ae +k iD++i + +  e +++e
  MMETSP1137-20121227|2000_1 414 VIDEXXAEAKKVIDEEIQKLQSlESSSTE 442
                 66788899999999999997752555555 PP

  == domain 3    score: 14.7 bits;  conditional E-value: 1.2e-05
   TIGR02173   2 iivisGpPGsGkttvakilaeklslkl..isaGkirelaekkg 42 
                 ii   GpPG Gkt++ k +a+ l+ ++   s G + ++ae kg
  MMETSP1137-20121227|2000_1 506 IICFVGPPGVGKTSIGKSIAKALNREFyrFSVGGLTDVAEIKG 548
                 68889******************96642378888999998766 PP

>> TIGR02397  dnaX_nterm: DNA polymerase III, subunit gamma and tau
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   6.4       1.1   4.7e+02     181     349 ..     275     445 ..     266     448 .. 0.68
   2 !   14.7   0.1   7.2e-06    0.0029      40      62 ..     508     530 ..     496     534 .. 0.90
   3 ?   -2.2   0.1      0.98     4e+02     191     256 ..     652     720 ..     638     746 .. 0.56

  Alignments for each domain:
  == domain 1    score: -2.4 bits;  conditional E-value: 1.1
   TIGR02397 181 iverlkkilkkekikveeeaLeliarkaeGslRDalslldqlislskgkitlekveellglvseekllelleailkkdl......eealklleellekgvdleklledliellrdlllvkktkselleveeeeeeslk..ekaeklslekllellkilleaekelkvsenkrialel 349
                 +++++k+ilk + +   +e +++i +++e  + +a +l d  ++l+    ++++++e+lg+++  + +e +  +lkk+l      +++ k+++e +++++    l+e+l ++ ++l l k+ k+ l+++ +e+ ++l+   +a+k+ +e   e+ k++ e+ ++l+  e++++++++
  MMETSP1137-20121227|2000_1 275 VMQTIKEILKLNPF--FKEQMQMILERSE--IHEAGKLADFGAALTTA--DAQSLQEVLGTLDVTERIEKTLLLLKKELelsklqSQISKQVDEKISSNQRRYLLMEQLKQIKKELGLEKDDKEALVTKFSERIATLQvpAEAKKVIDEXXAEAKKVIDEEIQKLQSLESSSTEFNV 445
                 55555555554433..3445666666654..56677777777777666..6788888888888777777666666655411111156777888888888888899999999999999999988777777666666555225677778889999999999999999998888887765 PP

  == domain 2    score: 14.7 bits;  conditional E-value: 7.2e-06
   TIGR02397  40 LfsGprGvGKTsiArilAkalNC 62 
                  f Gp GvGKTsi + +AkalN 
  MMETSP1137-20121227|2000_1 508 CFVGPPGVGKTSIGKSIAKALNR 530
                 69********************5 PP

  == domain 3    score: -2.2 bits;  conditional E-value: 0.98
   TIGR02397 191 kekikveeeaLeliarkaeGslRDalslldqlislskgkitlekveel...lglvseekllelleailk 256
                 +ek+ + +  Le  ar+  G   D ++l++ +isl +    ++ v++l   +  + ++  l+++++  +
  MMETSP1137-20121227|2000_1 652 DEKVXIARRYLEPTARQQMGLSADHMELTQDAISLIRWYCREAGVRNLqkhIEKICRKVALKVVQNSQE 720
                 567777777777777777777777777777777766554444444333000333334444444444444 PP

>> TIGR03922  T7SS_EccA: type VII secretion AAA-ATPase EccA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.2      0.58   2.4e+02     254     287 ..     359     392 ..     353     429 .. 0.71
   2 !   12.9   0.0   1.5e-05    0.0063     311     336 ..     503     528 ..     493     531 .. 0.87

  Alignments for each domain:
  == domain 1    score: -2.2 bits;  conditional E-value: 0.58
   TIGR03922 254 eledaaaaerkaklLaEaeaeLakqiGlervkeq 287
                 +++++   +++  lL+E  ++++k +Gle+  ++
  MMETSP1137-20121227|2000_1 359 QVDEKISSNQRRYLLMEQLKQIKKELGLEKDDKE 392
                 4556666677778888888888888888865443 PP

  == domain 2    score: 12.9 bits;  conditional E-value: 1.5e-05
   TIGR03922 311 rskHlllaGPPGtGkttiArvvakiy 336
                 + k + ++GPPG Gkt+i + +ak +
  MMETSP1137-20121227|2000_1 503 QGKIICFVGPPGVGKTSIGKSIAKAL 528
                 667789*****************976 PP

>> TIGR03499  FlhF: flagellar biosynthesis protein FlhF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   7.1    0.0012      0.47      75     212 ..     365     518 ..     239     527 .. 0.66
   2 ?   -3.8   0.1       5.2   2.1e+03      46      62 ..     713     728 ..     694     748 .. 0.41

  Alignments for each domain:
  == domain 1    score: 8.2 bits;  conditional E-value: 0.0012
   TIGR03499  75 pkklskaeekeekekeaeekaaeaaqeaekkleeae..................eelrkelkalkellekqlselal....eeedperakllkklleagvseelarel..leklke.kedaeeareklreaLekklsvkkeedeilekggviaLvGptGvGKT 212
                 +++++++   e+ ++ ++e   e++ +++                         + + +  ++ k+++++++++l++    ++e ++ ++ l++l++        +++   +   +  ++++   + +++ + + +  +       ++g++i +vGp+GvGKT
  MMETSP1137-20121227|2000_1 365 SSNQRRYLLMEQLKQIKKELGLEKDDKEA------LvtkfseriatlqvpaeakKVIDEXXAEAKKVIDEEIQKLQSlessSTEFNVTRNYLDWLTALPWGIYSKENFklKRAQ-KvLAEDHYGLDDIKDRILEFI--AVSALCGSTQGKIICFVGPPGVGKT 518
                 22222222222222222222222222222......0222333555555555554455555667777777777777667666667777777777777764433333332102222.235577777777777777777..555566678999************9 PP

  == domain 2    score: -3.8 bits;  conditional E-value: 5.2
   TIGR03499  46 evvaaideeesasaase 62 
                 +vv   +e+  ++aa e
  MMETSP1137-20121227|2000_1 713 KVVQNSQERD-EDAAPE 728
                 2222222222.222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (752 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       340  (0.0828864); expected 82.0 (0.02)
Passed bias filter:                      164  (0.0399805); expected 82.0 (0.02)
Passed Vit filter:                        42  (0.0102389); expected 4.1 (0.001)
Passed Fwd filter:                        10  (0.00243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.79u 0.18s 00:00:00.97 Elapsed: 00:00:00.90
# Mc/sec: 1102.84
//
Query:       MMETSP1137-20121227|2001_1  [L=145]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-05   22.0   0.0    1.6e-05   21.9   0.0    1.1  1  TIGR02037 degP_htrA_DO: peptidase Do
    3.4e-05   20.8   0.0    4.5e-05   20.4   0.0    1.1  1  TIGR02860 spore_IV_B: stage IV sporulation protein B
    8.8e-05   19.5   0.0    9.6e-05   19.4   0.0    1.1  1  TIGR00225 prc: C-terminal processing peptidase
    0.00014   18.7   0.0    0.00014   18.7   0.0    1.1  1  TIGR00054 TIGR00054: RIP metalloprotease RseP
    0.00037   16.4   0.0    0.00047   16.0   0.0    1.0  1  TIGR03900 prc_long_Delta: putative carboxyl-terminal-processing protease, deltaproteobacterial
    0.00076   16.5   0.0    0.00089   16.3   0.0    1.1  1  TIGR02038 protease_degS: periplasmic serine peptidase DegS


Domain annotation for each model (and alignments):
>> TIGR02037  degP_htrA_DO: peptidase Do
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.9   0.0   2.3e-08   1.6e-05     366     426 ..      65     122 ..      44     130 .. 0.73

  Alignments for each domain:
  == domain 1    score: 21.9 bits;  conditional E-value: 2.3e-08
   TIGR02037 366 ekkgvvvtkvkkkspaakaglkkgdvilsvnqkevksvaelkkvleeakkkervlllverg 426
                  kk v+v++v+ + paa agl+ gd i+s+n++ v+sv   + +l+ a   +++ l + r+
  MMETSP1137-20121227|2001_1  65 RKKHVLVERVDVGYPAAAAGLQIGDEIISINNEMVSSVCHAEGILQMA---GTLQLDILRT 122
                 346678888888888888888888888888888888887777777733...4556666555 PP

>> TIGR02860  spore_IV_B: stage IV sporulation protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   0.0   6.6e-08   4.5e-05     118     165 ..      72     119 ..      66     129 .. 0.86

  Alignments for each domain:
  == domain 1    score: 20.4 bits;  conditional E-value: 6.6e-08
   TIGR02860 118 ekGkiesPaeeagiqvGDlilkvngekikeeedvaklineaggeklkl 165
                 e+ ++  Pa++ag+q+GD i+++n+e + +  + + +++ ag+ +l++
  MMETSP1137-20121227|2001_1  72 ERVDVGYPAAAAGLQIGDEIISINNEMVSSVCHAEGILQMAGTLQLDI 119
                 5567788*******************************9999877765 PP

>> TIGR00225  prc: C-terminal processing peptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.0   1.4e-07   9.6e-05      53     108 ..      58     113 ..      36     129 .. 0.86

  Alignments for each domain:
  == domain 1    score: 19.4 bits;  conditional E-value: 1.4e-07
   TIGR00225  53 iGiqvqmeddeivivsplegsPAekagikpgDkIikvdgksvagmelddavelirG 108
                 +G++   +++++++  +  g PA+ ag++ gD+Ii+++++ v ++   + + ++ G
  MMETSP1137-20121227|2001_1  58 LGATFLDRKKHVLVERVDVGYPAAAAGLQIGDEIISINNEMVSSVCHAEGILQMAG 113
                 5888888899999999999*********************9988776666666666 PP

>> TIGR00054  TIGR00054: RIP metalloprotease RseP
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.0   2.1e-07   0.00014     201     238 ..      66     103 ..      25     131 .. 0.80

  Alignments for each domain:
  == domain 1    score: 18.7 bits;  conditional E-value: 2.1e-07
   TIGR00054 201 kielvlsdvvdnspaekaGlkeGDkilkidgeklkswr 238
                 k  + ++ v    pa+ aGl++GD+i++i++e++ s  
  MMETSP1137-20121227|2001_1  66 KKHVLVERVDVGYPAAAAGLQIGDEIISINNEMVSSVC 103
                 45566777777889999**************9987765 PP

>> TIGR03900  prc_long_Delta: putative carboxyl-terminal-processing protease, deltaproteobacterial
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0   6.8e-07   0.00047     142     201 ..      58     117 ..      51     123 .. 0.91

  Alignments for each domain:
  == domain 1    score: 16.0 bits;  conditional E-value: 6.8e-07
   TIGR03900 142 lGiviamRdrkltVlrvlpetPAaraGlkakDrivkideestvnmdlndavdrlRGpvdt 201
                 lG+    R ++++V rv  + PAa aGl+  D+i+ i++e    +  ++ + ++ G  + 
  MMETSP1137-20121227|2001_1  58 LGATFLDRKKHVLVERVDVGYPAAAAGLQIGDEIISINNEMVSSVCHAEGILQMAGTLQL 117
                 677778899*********************************999999999999998765 PP

>> TIGR02038  protease_degS: periplasmic serine peptidase DegS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0   1.3e-06   0.00089     274     314 ..      63     103 ..      44     121 .. 0.87

  Alignments for each domain:
  == domain 1    score: 16.3 bits;  conditional E-value: 1.3e-06
   TIGR02038 274 ledlrgivvtevdPngPaaragllvrdvilkldnkevisae 314
                 l++ + ++v  vd   Paa agl+  d i++++n+ v s+ 
  MMETSP1137-20121227|2001_1  63 LDRKKHVLVERVDVGYPAAAAGLQIGDEIISINNEMVSSVC 103
                 5667889****************************998875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (145 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        79  (0.0192589); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.18u 0.19s 00:00:00.37 Elapsed: 00:00:00.56
# Mc/sec: 335.76
//
Query:       MMETSP1137-20121227|2002_1  [L=235]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (235 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       110  (0.0268162); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.15s 00:00:00.37 Elapsed: 00:00:00.28
# Mc/sec: 1107.77
//
Query:       MMETSP1137-20121227|2003_1  [L=354]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.5e-13   48.4   7.8    1.9e-08   31.6   2.0    2.2  2  TIGR00776 RhaT: RhaT L-rhamnose-proton symporter family protein


Domain annotation for each model (and alignments):
>> TIGR00776  RhaT: RhaT L-rhamnose-proton symporter family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.1   2.4e-08   9.8e-05      44     136 ..      73     167 ..      70     196 .. 0.73
   2 !   31.6   2.0   4.6e-12   1.9e-08       3     137 ..     207     352 ..     205     354 .] 0.75

  Alignments for each domain:
  == domain 1    score: 19.4 bits;  conditional E-value: 2.4e-08
   TIGR00776  44 viailllpeftalsiflvgllsGalwalgqinqlksmrllGvSktmpistGlqLvvgtLlgvivfgewsvsistllG..llallliiiGvaltsl 136
                 +++++ +p+ + ++++ +++l+Galwa g++  + +++l+G+S ++ i    +++vg   g + +   +++     G    ++ ++++ +al +l
  MMETSP1137-20121227|2003_1  73 TLMLTARPDAHSVKLYPFAILGGALWATGNTMAVPVINLIGLSLGLLIWGCTNMLVGWATGRFGLFGLEQEALADEGlnYAGVCFVLVALALYTL 167
                 577889999999********************************998877666666666665544333333333334335666666666666554 PP

  == domain 2    score: 31.6 bits;  conditional E-value: 4.6e-12
   TIGR00776   3 illallpalswgs.....ivliakkvk.gkpasqilGttvgalilsiviailllpefta.....lsiflvgllsGalwalgqinqlksmrllGvSktmpistGlqLvvgtLlgvivfgewsvsistllGllallliiiGvaltsla 137
                 illa+l  +++gs      +++ +k++ +kp   +    +g  + s    ++    +        +++l+++lsG++wa++q+  ++s + l +S++ pi t     vg+ +gv+vfge +   ++ +   al l i G +l  l+
  MMETSP1137-20121227|2003_1 207 ILLAMLSGAFYGSnftpnTYMMEQKLGpAKPLDYVFSHFTGIYLTSTFWFVVYCVGMRSaprifPRLVLPSMLSGLVWAIAQTCWFISNDALSLSVAFPIITSGPGAVGAAWGVFVFGEIKGRRNFCVLGAALSLTIAGCVLIGLS 352
                 7777777777776332224677788888888888777777776665333332222222233455899********************************988777778889**********9999988888999999999987766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (354 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        98  (0.0238908); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.27u 0.16s 00:00:00.43 Elapsed: 00:00:00.56
# Mc/sec: 834.36
//
Query:       MMETSP1137-20121227|2004_1  [L=54]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        18  (0.0043881); expected 82.0 (0.02)
Passed bias filter:                       17  (0.00414432); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.13s 00:00:00.24 Elapsed: 00:00:00.80
# Mc/sec: 89.09
//
Query:       MMETSP1137-20121227|2005_1  [L=299]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (299 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       142  (0.0346173); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.16s 00:00:00.42 Elapsed: 00:00:01.30
# Mc/sec: 303.57
//
Query:       MMETSP1137-20121227|2006_1  [L=572]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (572 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       135  (0.0329108); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.16s 00:00:00.55 Elapsed: 00:00:00.54
# Mc/sec: 1398.11
//
Query:       MMETSP1137-20121227|2007_1  [L=112]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (112 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        50  (0.0121892); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.15s 00:00:00.28 Elapsed: 00:00:00.34
# Mc/sec: 434.79
//
Query:       MMETSP1137-20121227|2008_1  [L=100]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (100 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        37  (0.00901999); expected 82.0 (0.02)
Passed bias filter:                       36  (0.00877621); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.17s 00:00:00.32 Elapsed: 00:00:00.41
# Mc/sec: 321.92
//
Query:       MMETSP1137-20121227|2009_1  [L=193]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (193 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        62  (0.0151146); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.16s 00:00:00.34 Elapsed: 00:00:00.27
# Mc/sec: 943.48
//
Query:       MMETSP1137-20121227|2010_1  [L=417]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (417 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        55  (0.0134081); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.10s 00:00:00.39 Elapsed: 00:00:00.52
# Mc/sec: 1058.45
//
Query:       MMETSP1137-20121227|2011_1  [L=452]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (452 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        97  (0.023647); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.15s 00:00:00.48 Elapsed: 00:00:00.49
# Mc/sec: 1217.53
//
Query:       MMETSP1137-20121227|2012_1  [L=1094]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.1e-75  242.4   1.5    1.4e-08   32.2   0.0   13.4 13  TIGR00756 PPR: pentatricopeptide repeat domain


Domain annotation for each model (and alignments):
>> TIGR00756  PPR: pentatricopeptide repeat domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    2.8   0.2    0.0081        33       6      34 ..     525     553 ..     523     554 .. 0.92
   2 !   20.1   0.0   2.5e-08    0.0001       1      34 [.     555     588 ..     555     589 .. 0.96
   3 !   22.4   0.0   4.7e-09   1.9e-05       1      34 [.     590     624 ..     590     625 .. 0.96
   4 !   32.2   0.0   3.5e-12   1.4e-08       2      35 .]     627     660 ..     626     660 .. 0.97
   5 !   16.9   0.0   2.5e-07     0.001       1      30 [.     661     690 ..     661     691 .. 0.96
   6 !   15.3   0.0   8.5e-07    0.0035       3      35 .]     703     735 ..     702     735 .. 0.97
   7 !   27.3   0.0   1.3e-10   5.4e-07       1      34 [.     736     769 ..     736     770 .. 0.95
   8 !   23.8   0.0   1.7e-09   6.9e-06       1      34 [.     771     804 ..     771     805 .. 0.95
   9 !   10.9   0.0   2.1e-05     0.085       2      34 ..     807     839 ..     806     840 .. 0.95
  10 !   13.4   0.0   3.4e-06     0.014       2      34 ..     842     874 ..     841     899 .. 0.94
  11 !   16.2   0.0   4.4e-07    0.0018       2      34 ..     906     938 ..     905     939 .. 0.94
  12 !   15.5   0.0   7.5e-07    0.0031       2      33 ..     941     972 ..     940     974 .. 0.96
  13 !    7.9   0.0   0.00019      0.77       5      33 ..    1015    1043 ..    1015    1045 .. 0.90

  Alignments for each domain:
  == domain 1    score: 2.8 bits;  conditional E-value: 0.0081
   TIGR00756   6 lisglckagrveeAlelfdeMkergivPd 34 
                 +i ++  + r+ eA+ +   M+  g+  d
  MMETSP1137-20121227|2012_1 525 MIQSMLSQERLAEAHVMVGMMRMVGLPVD 553
                 999*******************9999887 PP

  == domain 2    score: 20.1 bits;  conditional E-value: 2.5e-08
   TIGR00756   1 vtyntlisglckagrveeAlelfdeMkergivPd 34 
                 v+yn l+ ++ k++++  +l+++++M+++++ Pd
  MMETSP1137-20121227|2012_1 555 VMYNLLMTAYKKRRQWQLVLQVMQQMQASNVMPD 588
                 69*****************************999 PP

  == domain 3    score: 22.4 bits;  conditional E-value: 4.7e-09
   TIGR00756   1 vtyntlisglckagrv.eeAlelfdeMkergivPd 34 
                 v+yn+li++++k  ++   A+ +++eM ++g+ P 
  MMETSP1137-20121227|2012_1 590 VSYNILIDACGKGQQLqXAAFAYYEEMARNGLQPG 624
                 79******************************995 PP

  == domain 4    score: 32.2 bits;  conditional E-value: 3.5e-12
   TIGR00756   2 tyntlisglckagrveeAlelfdeMkergivPda 35 
                 ty++li++++k+ +++ A el+d+M+++g+ P+a
  MMETSP1137-20121227|2012_1 627 TYTSLIDACGKSQQLKRAYELLDQMQREGVQPNA 660
                 9*******************************96 PP

  == domain 5    score: 16.9 bits;  conditional E-value: 2.5e-07
   TIGR00756   1 vtyntlisglckagrveeAlelfdeMkerg 30 
                 +t++t+i+++ +a  ++ +l+++++M+++g
  MMETSP1137-20121227|2012_1 661 HTFTTIINACTQAQXLDLGLQVLEQMISCG 690
                 69*************************987 PP

  == domain 6    score: 15.3 bits;  conditional E-value: 8.5e-07
   TIGR00756   3 yntlisglckagrveeAlelfdeMkergivPda 35 
                 y+tli++++ka  v++A+ +++ M++ g++P++
  MMETSP1137-20121227|2012_1 703 YTTLIRACGKAFAVDKAFAVLRCMLDVGLKPNT 735
                 9******************************96 PP

  == domain 7    score: 27.3 bits;  conditional E-value: 1.3e-10
   TIGR00756   1 vtyntlisglckagrveeAlelfdeMkergivPd 34 
                 vt+n+li++++ka ++++A+ ++++M   +  Pd
  MMETSP1137-20121227|2012_1 736 VTFNCLIDACAKAHDLDKAFHVLRLMYHYNNPPD 769
                 7*************************99999998 PP

  == domain 8    score: 23.8 bits;  conditional E-value: 1.7e-09
   TIGR00756   1 vtyntlisglckagrveeAlelfdeMkergivPd 34 
                 vty++li+++ +a ++ +A+el+ +M+ + + P+
  MMETSP1137-20121227|2012_1 771 VTYSALIDACLRAQEIGKAFELLAQMQHDHLTPS 804
                 7**************************9999987 PP

  == domain 9    score: 10.9 bits;  conditional E-value: 2.1e-05
   TIGR00756   2 tyntlisglckagrveeAlelfdeMkergivPd 34 
                 +y++l+ +  k+g++++ +e+++ M  +g++P+
  MMETSP1137-20121227|2012_1 807 MYTSLLEASTKSGDINHIFEVLHMMGGAGMRPS 839
                 7****************************9997 PP

  == domain 10    score: 13.4 bits;  conditional E-value: 3.4e-06
   TIGR00756   2 tyntlisglckagrveeAlelfdeMkergivPd 34 
                 +++++i ++++a++++ A++ +  Mk   + P+
  MMETSP1137-20121227|2012_1 842 AFTAIIAACGRAKQIDRAFDTLAYMKCVHVAPT 874
                 699**********************98777775 PP

  == domain 11    score: 16.2 bits;  conditional E-value: 4.4e-07
   TIGR00756   2 tyntlisglckagrveeAlelfdeMkergivPd 34 
                 ++n+li  ++ +g+++ Al++f+ M++  + P+
  MMETSP1137-20121227|2012_1 906 VFNSLIQLCGTSGQIDYALQIFEYMHKVQVLPN 938
                 79************************9999888 PP

  == domain 12    score: 15.5 bits;  conditional E-value: 7.5e-07
   TIGR00756   2 tyntlisglckagrveeAlelfdeMkergivP 33 
                 t+ tlis++  +g++  A++ +++M ++g++P
  MMETSP1137-20121227|2012_1 941 TFKTLISACITHGELGRAESAMRDMTSAGWEP 972
                 899****************************9 PP

  == domain 13    score: 7.9 bits;  conditional E-value: 0.00019
   TIGR00756    5 tlisglckagrveeAlelfdeMkergivP 33  
                  tl+ +++k g++  A ++f   +++g++ 
  MMETSP1137-20121227|2012_1 1015 TLLECCVKMGEYAVAADVFTHALAAGHYI 1043
                  79*****************9998888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1094 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       139  (0.0338859); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.65u 0.16s 00:00:00.81 Elapsed: 00:00:01.12
# Mc/sec: 1289.25
//
Query:       MMETSP1137-20121227|2013_1  [L=122]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (122 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        63  (0.0153584); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.18s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 575.10
//
Query:       MMETSP1137-20121227|2014_1  [L=198]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (198 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        46  (0.011214); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.16s 00:00:00.33 Elapsed: 00:00:00.24
# Mc/sec: 1088.91
//
Query:       MMETSP1137-20121227|2015_1  [L=154]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00084   17.2   0.0     0.0012   16.7   0.0    1.3  1  TIGR00411 redox_disulf_1: redox-active disulfide protein 1
     0.0026   15.5   0.0     0.0046   14.7   0.0    1.4  1  TIGR02190 GlrX-dom: glutaredoxin-family domain
  ------ inclusion threshold ------
      0.012   13.7   0.0      0.019   13.0   0.0    1.4  1  TIGR02194 GlrX_NrdH: glutaredoxin-like protein NrdH
      0.032   12.1   0.0      0.054   11.3   0.0    1.4  1  TIGR02189 GlrX-like_plant: glutaredoxin-like family
      0.032   12.6   0.1      0.065   11.6   0.1    1.6  1  TIGR02196 GlrX_YruB: glutaredoxin-like protein, YruB-family


Domain annotation for each model (and alignments):
>> TIGR00411  redox_disulf_1: redox-active disulfide protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0   1.5e-06    0.0012       2      63 ..      55     115 ..      54     131 .. 0.85

  Alignments for each domain:
  == domain 1    score: 16.7 bits;  conditional E-value: 1.5e-06
   TIGR00411   2 kielftsPtCPyCPkakkvveevakeegdkvevekinvmedlkkaleyGimavPaivingkv 63 
                 k++lft   C  C  akk   ev++e + ++e   i  + +++   +y    +P + i +k+
  MMETSP1137-20121227|2015_1  55 KVRLFTKEGCTLCDVAKKALVEVRDEHPHTLEAVDITDEGNRQYWDKYK-YDIPVLHIADKY 115
                 689****************************999997777777665664.467777777776 PP

>> TIGR02190  GlrX-dom: glutaredoxin-family domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0   5.7e-06    0.0046       8      30 ..      54      76 ..      47      88 .. 0.87

  Alignments for each domain:
  == domain 1    score: 14.7 bits;  conditional E-value: 5.7e-06
   TIGR02190  8 esvsvftkpGCPfCakakavLke 30
                 +v +ftk GC  C  ak++L e
  MMETSP1137-20121227|2015_1 54 PKVRLFTKEGCTLCDVAKKALVE 76
                5799***************9976 PP

>> TIGR02194  GlrX_NrdH: glutaredoxin-like protein NrdH
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   2.3e-05     0.019       1      36 [.      56      95 ..      56     122 .. 0.69

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 2.3e-05
   TIGR02194  1 itvysknnCvqCkatkkal....eeqniafeeinideqpe 36
                + +++k+ C  C+++kkal    +e+    e ++i+ + +
  MMETSP1137-20121227|2015_1 56 VRLFTKEGCTLCDVAKKALvevrDEHPHTLEAVDITDEGN 95
                678***************9655567778888899876543 PP

>> TIGR02189  GlrX-like_plant: glutaredoxin-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   6.6e-05     0.054      10      68 ..      56     112 ..      49     121 .. 0.67

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 6.6e-05
   TIGR02189  10 vvifskssCClshvvkrLllel.GvnPavveldkeaeakeiekallelgskeavPvvfvG 68 
                 v +f+k++C l+ v+k+ l e+   +P   e  + ++  e ++ + +   k  +Pv+++ 
  MMETSP1137-20121227|2015_1  56 VRLFTKEGCTLCDVAKKALVEVrDEHPHTLEAVDITD--EGNRQYWD-KYKYDIPVLHIA 112
                 678************9988876256787777554433..23333333.345566666665 PP

>> TIGR02196  GlrX_YruB: glutaredoxin-like protein, YruB-family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.1   7.9e-05     0.065       1      59 [.      55     114 ..      55     127 .. 0.70

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 7.9e-05
   TIGR02196   1 kvkvYttpwCppCkkakeyL....kskgiafeeidvekdsaaaeellkklgqrsvPvivigek 59 
                 kv+++t++ C  C  ak++L     ++    e++d+++ + ++++   +  ++ +Pv+ i++k
  MMETSP1137-20121227|2015_1  55 KVRLFTKEGCTLCDVAKKALvevrDEHPHTLEAVDITD-EGNRQY--WDKYKYDIPVLHIADK 114
                 799****************9322223455567777764.444555..3444567777777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (154 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       123  (0.0299854); expected 82.0 (0.02)
Passed bias filter:                      111  (0.02706); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.19u 0.12s 00:00:00.31 Elapsed: 00:00:00.31
# Mc/sec: 655.69
//
Query:       MMETSP1137-20121227|2016_1  [L=584]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.9e-11   39.0   0.0      0.016   12.8   0.4    5.0  5  TIGR03804 para_beta_helix: parallel beta-helix repeat


Domain annotation for each model (and alignments):
>> TIGR03804  para_beta_helix: parallel beta-helix repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0      0.34   1.4e+03      10      17 ..     167     174 ..     166     176 .. 0.59
   2 !    9.5   0.0     4e-05      0.17       1      34 [.     298     331 ..     298     340 .. 0.84
   3 ?    0.8   0.0      0.02        84       3      40 ..     345     383 ..     343     387 .. 0.74
   4 !    8.4   0.0   9.2e-05      0.38       1      43 [.     388     431 ..     388     432 .. 0.89
   5 !   12.8   0.4   3.8e-06     0.016      10      43 ..     455     489 ..     448     490 .. 0.90

  Alignments for each domain:
  == domain 1    score: -3.0 bits;  conditional E-value: 0.34
   TIGR03804  10 ntlenNta 17 
                 +tl+++t+
  MMETSP1137-20121227|2016_1 167 CTLTGCTL 174
                 56666665 PP

  == domain 2    score: 9.5 bits;  conditional E-value: 4e-05
   TIGR03804   1 GIyLesssnntlenNtasnNsyGIyLydSsnNtl 34 
                 GI + + s++ + +Nt+  ++ GI +   ++   
  MMETSP1137-20121227|2016_1 298 GIDVGDGSSPVVVGNTIRKSKTGILVCKGAGGHY 331
                 9***********************9887666555 PP

  == domain 3    score: 0.8 bits;  conditional E-value: 0.02
   TIGR03804   3 yLesssnnt.lenNtasnNsyGIyLydSsnNtlsnNtas 40 
                   +ss++   +  N++ ++ +GI     ++ +   N++ 
  MMETSP1137-20121227|2016_1 345 ECHSSHEELhVHENKIDGCDIGILFLAGGGGRCAANRVQ 383
                 5566666666789**********9888777777776665 PP

  == domain 4    score: 8.4 bits;  conditional E-value: 9.2e-05
   TIGR03804   1 GIyLesssnntlenNtasnNsy.GIyLydSsnNtlsnNtasnNg 43 
                 GI L ++s++ + ++ ++ N+  G+ +++ ++  ++++ + +Ng
  MMETSP1137-20121227|2016_1 388 GIELRGASSPEVASCEVFQNRRaGVQVQRDGGGCVRECHIHDNG 431
                 9************************9999988888777777775 PP

  == domain 5    score: 12.8 bits;  conditional E-value: 3.8e-06
   TIGR03804  10 ntlenNtasnNsy.GIyLydSsnNtlsnNtasnNg 43 
                  ++e N++  N++ G++  + s + +++Nt+s+Ng
  MMETSP1137-20121227|2016_1 455 ARIEHNRIRANKGcGVFSDNGSLCDIIGNTISDNG 489
                 57999*****************************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (584 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       112  (0.0273038); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.13s 00:00:00.51 Elapsed: 00:00:00.53
# Mc/sec: 1454.37
//
Query:       MMETSP1137-20121227|2017_1  [L=183]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (183 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        64  (0.0156021); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.17s 00:00:00.35 Elapsed: 00:00:00.30
# Mc/sec: 805.13
//
Query:       MMETSP1137-20121227|2018_1  [L=370]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (370 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        83  (0.020234); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.15s 00:00:00.43 Elapsed: 00:00:00.40
# Mc/sec: 1220.90
//
Query:       MMETSP1137-20121227|2020_1  [L=388]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.023   12.7   1.1        7.1    4.9   0.0    3.9  4  TIGR00756 PPR: pentatricopeptide repeat domain


Domain annotation for each model (and alignments):
>> TIGR00756  PPR: pentatricopeptide repeat domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0      0.35   1.4e+03       7      16 ..      69      78 ..      69      80 .. 0.85
   2 ?    2.2   0.0     0.013        53      12      34 ..     173     195 ..     162     196 .. 0.81
   3 ?    1.3   0.0     0.023        96       7      26 ..     203     222 ..     203     224 .. 0.88
   4 ?    4.9   0.0    0.0017       7.1       7      31 ..     273     297 ..     271     301 .. 0.93

  Alignments for each domain:
  == domain 1    score: -2.4 bits;  conditional E-value: 0.35
   TIGR00756  7 isglckagrv 16
                i g++++g++
  MMETSP1137-20121227|2020_1 69 IGGCGRSGQL 78
                789****986 PP

  == domain 2    score: 2.2 bits;  conditional E-value: 0.013
   TIGR00756  12 kagrveeAlelfdeMkergivPd 34 
                  + r+ e+l l+ + ++rg+ P+
  MMETSP1137-20121227|2020_1 173 AEQRWLEVLGLLGRVRSRGMTPS 195
                 577999**************998 PP

  == domain 3    score: 1.3 bits;  conditional E-value: 0.023
   TIGR00756   7 isglckagrveeAlelfdeM 26 
                 +++ ++ g++  +++lf+e+
  MMETSP1137-20121227|2020_1 203 MRAAANIGDWGAVCRLFNEL 222
                 6778899**********995 PP

  == domain 4    score: 4.9 bits;  conditional E-value: 0.0017
   TIGR00756   7 isglckagrveeAlelfdeMkergi 31 
                 ++++c +g++  +   + +M+e g+
  MMETSP1137-20121227|2020_1 273 MRAHCARGDTALVTAALLRMRELGC 297
                 89**********************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (388 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       130  (0.0316919); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.29u 0.16s 00:00:00.44 Elapsed: 00:00:00.38
# Mc/sec: 1347.68
//
Query:       MMETSP1137-20121227|2021_1  [L=316]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (316 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       102  (0.0248659); expected 82.0 (0.02)
Passed bias filter:                      100  (0.0243784); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.17s 00:00:00.43 Elapsed: 00:00:00.31
# Mc/sec: 1345.44
//
Query:       MMETSP1137-20121227|2024_1  [L=340]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (340 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       142  (0.0346173); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.13s 00:00:00.39 Elapsed: 00:00:00.39
# Mc/sec: 1150.67
//
Query:       MMETSP1137-20121227|2028_1  [L=232]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.5e-21   73.0   0.0    9.6e-21   72.2   0.0    1.4  1  TIGR03631 bact_S13: 30S ribosomal protein S13
    1.4e-08   32.9   0.2    3.1e-08   31.8   0.1    1.7  1  TIGR03629 arch_S13P: archaeal ribosomal protein S13P


Domain annotation for each model (and alignments):
>> TIGR03631  bact_S13: 30S ribosomal protein S13
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.2   0.0   4.7e-24   9.6e-21       9     109 ..     118     226 ..     110     230 .. 0.84

  Alignments for each domain:
  == domain 1    score: 72.2 bits;  conditional E-value: 4.7e-24
   TIGR03631   9 knkrveiaLtyiyGigktrakkilekagidedkkvkdlteeelekirevieeeykv.e.......gdlrrevslnikrlvdigcyrGlRhrkgLPvrGqrtktnartrk 109
                   + +e+++ +++G g+ r++++ +++g      ++ +te++ + i++++++ ++  e       + l++e+ lnikrl+digcyrG+Rh   LP++Gqrt+tnartrk
  MMETSP1137-20121227|2028_1 118 FYRPAEFGISAVFGYGRVRSRRLAAEIGCFGYYPLSRMTESQRQFIKDALNDACTAyEepqraagAALQKEILLNIKRLKDIGCYRGTRHILRLPCNGQRTRTNARTRK 226
                 556678999*************************************99998765432212222225799***************************************9 PP

>> TIGR03629  arch_S13P: archaeal ribosomal protein S13P
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.8   0.1   1.5e-11   3.1e-08      93     139 ..     183     229 ..     107     231 .. 0.91

  Alignments for each domain:
  == domain 1    score: 31.8 bits;  conditional E-value: 1.5e-11
   TIGR03629  93 sdleltvkeDinrlkkirsyrGiRhelGlkvRGqRtkstgRkgstvG 139
                 + l+  +  +i+rlk i +yrG+Rh l l++ GqRt+++ R+ + +G
  MMETSP1137-20121227|2028_1 183 AALQKEILLNIKRLKDIGCYRGTRHILRLPCNGQRTRTNARTRKRMG 229
                 5555666678*******************************998776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (232 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        71  (0.0173086); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.21u 0.18s 00:00:00.39 Elapsed: 00:00:00.33
# Mc/sec: 927.92
//
Query:       MMETSP1137-20121227|2029_1  [L=682]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.2e-05   20.1   0.0     0.0015   15.6   0.0    2.7  3  TIGR03547 muta_rot_YjhT: mutatrotase, YjhT family


Domain annotation for each model (and alignments):
>> TIGR03547  muta_rot_YjhT: mutatrotase, YjhT family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   3.7e-07    0.0015      59     127 ..      42     114 ..      34     151 .. 0.84
   2 ?   -1.3   0.0     0.049     2e+02      62      86 ..     328     352 ..     314     366 .. 0.79
   3 ?    0.6   0.0     0.013        53      81     100 ..     416     435 ..     402     448 .. 0.85

  Alignments for each domain:
  == domain 1    score: 15.6 bits;  conditional E-value: 3.7e-07
   TIGR03547  59 aavvdgklyvFgGvgkeesesslqvlddvykydpkknsWekletrsPv....gllGasaveleegkililGGv 127
                 a+   + + v+gG g + + ++l  l+dv++++ k+ sW++l +        g l +s+v + ++ i+i+GG+
  MMETSP1137-20121227|2029_1  42 AVSFSDSMVVYGGRGYQYNVHNLSPLSDVWSFSFKETSWKQLISAEAAadgpGELSHSCVLMPNSDIMIFGGI 114
                 55678999*********************************98765432222678899**9**********96 PP

  == domain 2    score: -1.3 bits;  conditional E-value: 0.049
   TIGR03547  62 vdgklyvFgGvgkeesesslqvldd 86 
                  + +l vFgG+  ++s+ ++ +++d
  MMETSP1137-20121227|2029_1 328 RGTNLLVFGGLYTDTSDDTIYIMKD 352
                 567899*****99999999999988 PP

  == domain 3    score: 0.6 bits;  conditional E-value: 0.013
   TIGR03547  81 lqvlddvykydpkknsWekl 100
                 + ++ dv++yd+++++W  +
  MMETSP1137-20121227|2029_1 416 MDIFGDVWVYDSESDKWLLV 435
                 56899************766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (682 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        70  (0.0170648); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.13s 00:00:00.55 Elapsed: 00:00:00.60
# Mc/sec: 1500.28
//
Query:       MMETSP1137-20121227|2031_1  [L=70]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.32
# Mc/sec: 288.73
//
Query:       MMETSP1137-20121227|2033_1  [L=514]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0017   16.0   2.9      0.089   10.6   0.2    3.1  3  TIGR03859 PQQ_PqqD: coenzyme PQQ biosynthesis protein PqqD


Domain annotation for each model (and alignments):
>> TIGR03859  PQQ_PqqD: coenzyme PQQ biosynthesis protein PqqD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0      0.33   1.3e+03      42      56 ..     183     197 ..     178     207 .. 0.78
   2 !   10.6   0.2   2.2e-05     0.089      46      77 ..     460     491 ..     456     492 .. 0.91
   3 !    5.8   0.1   0.00066       2.7      55      77 ..     490     512 ..     489     513 .. 0.92

  Alignments for each domain:
  == domain 1    score: -2.8 bits;  conditional E-value: 0.33
   TIGR03859  42 GkrsvaeiiqeLeqe 56 
                  + +va iiq++ q+
  MMETSP1137-20121227|2033_1 183 STPNVAGIIQRMGQR 197
                 5678999**999987 PP

  == domain 2    score: 10.6 bits;  conditional E-value: 2.2e-05
   TIGR03859  46 vaeiiqeLeqeFpaaeeieeDVlafleearak 77 
                 v ++i++ +++F ++eei ++V+af+e+a+ k
  MMETSP1137-20121227|2033_1 460 VVDLIEQAHSKFADDEEICNEVEAFFEQAHSK 491
                 778999***********************986 PP

  == domain 3    score: 5.8 bits;  conditional E-value: 0.00066
   TIGR03859  55 qeFpaaeeieeDVlafleearak 77 
                 ++F ++eei ++V+af+e+a+ k
  MMETSP1137-20121227|2033_1 490 SKFADDEEICNEVEAFFEQAHSK 512
                 68*9****************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (514 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       154  (0.0375427); expected 82.0 (0.02)
Passed bias filter:                       97  (0.023647); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.16s 00:00:00.55 Elapsed: 00:00:00.62
# Mc/sec: 1094.23
//
Query:       MMETSP1137-20121227|2035_1  [L=355]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (355 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        48  (0.0117016); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.14s 00:00:00.40 Elapsed: 00:00:00.31
# Mc/sec: 1511.49
//
Query:       MMETSP1137-20121227|2036_1  [L=273]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.9e-22   77.2   1.2    6.5e-22   76.1   0.8    1.5  1  TIGR02280 PaaB1: phenylacetate degradation probable enoyl-CoA hydratase PaaB
    1.7e-17   61.4   0.5    2.2e-17   61.1   0.3    1.1  1  TIGR03189 dienoyl_CoA_hyt: cyclohexa-1,5-dienecarbonyl-CoA hydratase
    3.7e-17   60.6   0.0      5e-17   60.1   0.0    1.2  1  TIGR01929 menB: naphthoate synthase
    9.9e-14   49.1   0.0    1.1e-13   48.9   0.0    1.1  1  TIGR03210 badI: 2-ketocyclohexanecarboxyl-CoA hydrolase
    7.1e-13   45.6   0.0    7.7e-13   45.5   0.0    1.1  1  TIGR02437 FadB: fatty oxidation complex, alpha subunit FadB
    1.3e-12   44.4   0.0    1.5e-12   44.2   0.0    1.1  1  TIGR02441 fa_ox_alpha_mit: fatty acid oxidation complex, alpha subunit, mitochondrial
    4.1e-11   39.7   0.2    4.7e-11   39.5   0.1    1.1  1  TIGR02440 FadJ: fatty oxidation complex, alpha subunit FadJ


Domain annotation for each model (and alignments):
>> TIGR02280  PaaB1: phenylacetate degradation probable enoyl-CoA hydratase PaaB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.1   0.8   1.1e-24   6.5e-22      33     251 ..      53     269 ..       9     272 .. 0.86

  Alignments for each domain:
  == domain 1    score: 76.1 bits;  conditional E-value: 1.1e-24
   TIGR02280  33 ealerverddvrallltGaGrGfcaGqdlsernvtkgaapdlGetvekfynplvrrlaalpkpvvvavnGvaaGaGanlalagdivla.aesakfiqafaklGlipdsGGtwllprlvGrarakglallgekldaetaaewGliwqvvddealadevqalaahlakqptrglalikralqa.aetnsldtqldlerdlqrelGrsadyaeGvaafldkrep 251
                 e+ + v++ dvra+ll  +G  f++G d+ + +  +++     + v +  + + ++l+ +p+  v+av G     Ga+la ++d+ la +esa+f    ++lG    +     l ++vG  +a  +++l+ ++da++a   Gl   vv  ++   +v+++ a+l ++  +++a  kr+l a a+++sld++ ++  + + ++  sa ++ G++ fl+k++ 
  MMETSP1137-20121227|2036_1  53 ESSDPVQNGDVRAILLEATGPTFSSGHDFRDFQGASQHE---QREVLQICGNVNKLLTRVPQVSVAAVTGNCLAGGAQLAASCDLLLAeRESARFCFPGVRLGGFCHTPA-VPLVQRVGARKALEMTVLAREIDADEAFRIGLANLVVPRAEWRVTVDEMMAQLVAGFNKSVADGKRTLYAqAAARSLDEKYEIATEAMVDMFSSASFQAGMKKFLSKKKE 269
                 3445577889*******************9988666543...467778888888889999999************************94579***********9998865.577899**************************************************************8746789*******************************9975 PP

>> TIGR03189  dienoyl_CoA_hyt: cyclohexa-1,5-dienecarbonyl-CoA hydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.1   0.3   3.7e-20   2.2e-17      38     217 ..      56     237 ..      30     271 .. 0.74

  Alignments for each domain:
  == domain 1    score: 61.1 bits;  conditional E-value: 3.7e-20
   TIGR03189  38 ealeaaalravlldaegphfsfgasveehmpdqca...amlkslhklviemldspvpilvavrgqclggglevaaagnllfaap.daklgqpeiklgvfapaascllpervgkvaaedllysgrsidgaegariglvdavaedpeaaalayfdehlaklsasslrfavraarlgvvervkakia 217
                 +  ++  +ra+ll+a gp fs g    +    +     ++l+   ++ + +  +p   + av g+cl gg ++aa+ +ll+a    a++  p ++lg f+ + +  l +rvg   a ++    r id++e++rigl++ v+   e       de +a+l a   +      r    +     ++
  MMETSP1137-20121227|2036_1  56 DPVQNGDVRAILLEATGPTFSSGHDFRDFQGASQHeqrEVLQICGNVNKLLTRVPQVSVAAVTGNCLAGGAQLAASCDLLLAEReSARFCFPGVRLGGFCHTPAVPLVQRVGARKALEMTVLAREIDADEAFRIGLANLVVPRAEW--RVTVDEMMAQLVAGFNKSVADGKRTLYAQAAARSLD 237
                 5678899****************99988765544301145554444444445667777889*******************99762699****************************************************966664..445788888888876555555555444444444444 PP

>> TIGR01929  menB: naphthoate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.1   0.0   8.5e-20     5e-17      45     253 ..      60     268 ..       6     271 .. 0.80

  Alignments for each domain:
  == domain 1    score: 60.1 bits;  conditional E-value: 8.5e-20
   TIGR01929  45 dsdiGvviltGaGdkafcsGGdqkvrgksGykdesGesrlnvl.evqrlirtlpkpvialvnGyaiGGGhvlhvvcdltias.enarfgqtgpkvGsfdgGyGsaylarivGqkkareifflcrqydaeeaekmGlvnavvelaeleketvewareilaksplalrllkaalnadldG..qaGlqelaGeatllfylteeaqeGrdaflekre 253
                 + d+  ++l  +G  +f sG d   r  +G  +++ ++ l++  +v++l+  +p++ +a v+G ++ GG  l   cdl +a  e arf   g ++G f     +  l + vG +ka e+  l+r+ da ea ++Gl n vv+ ae   +  e+  +++a   +++   k++l a+     +  + e+a ea + ++ ++  q G + fl k++
  MMETSP1137-20121227|2036_1  60 NGDVRAILLEATG-PTFSSGHD--FRDFQGASQHEQREVLQICgNVNKLLTRVPQVSVAAVTGNCLAGGAQLAASCDLLLAErESARFCFPGVRLGGFCHT-PAVPLVQRVGARKALEMTVLAREIDADEAFRIGLANLVVPRAEWRVTVDEMMAQLVAGFNKSVADGKRTLYAQAAArsLDEKYEIATEAMVDMFSSASFQAGMKKFLSKKK 268
                 4466677777666.57999998..578889888899999999758************************************99***************765.56678888**********************************987766677777777666666666666666554411556788999999999999999999999998875 PP

>> TIGR03210  badI: 2-ketocyclohexanecarboxyl-CoA hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.9   0.0   1.9e-16   1.1e-13      46     255 ..      62     273 .]       9     273 .] 0.83

  Alignments for each domain:
  == domain 1    score: 48.9 bits;  conditional E-value: 1.9e-16
   TIGR03210  46 eigvivlagagdkafctggdqsthdg..nydgrgviglpveelhsairdvakpviarvqgyaigggnvlvticdltias.ekavlgqvgpkvgsvdpgygtallarvvgekkareiwylcrrysakealamglvnavvphdqldaevkkwcdeiveksptalaiakrsfnvdtahqa..giaglgmyalklyydteesregvkalqekrkpefrk 255
                 ++ +i+l  +g  +f +g d    +g  +++ r v+ +   ++++ +  v++  +a v g ++ gg  l++ cdl +a  e a +   g ++g         l+ r vg +ka e+  l+r   a+ea  +gl+n+vvp  +    v+    ++v     ++a  kr++  ++a ++      ++  a+   + ++  + g+k +  k+k + rk
  MMETSP1137-20121227|2036_1  62 DVRAILLEATG-PTFSSGHDFRDFQGasQHEQREVLQI-CGNVNKLLTRVPQVSVAAVTGNCLAGGAQLAASCDLLLAErESARFCFPGVRLGGFCHTPAVPLVQR-VGARKALEMTVLAREIDADEAFRIGLANLVVPRAEWRVTVDEMMAQLVAGFNKSVADGKRTLYAQAAARSldEKYEIATEAMVDMFSSASFQAGMKKFLSKKKEKGRK 273
                 55566665555.57889998877776324566666665.4678888999**************************99964899**********9987766666555.79***********************************************************99887765411445677788888888888888999998888877665 PP

>> TIGR02437  FadB: fatty oxidation complex, alpha subunit FadB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.5   0.0   1.3e-15   7.7e-13      48     207 ..      59     215 ..      13     248 .. 0.90

  Alignments for each domain:
  == domain 1    score: 45.5 bits;  conditional E-value: 1.3e-15
   TIGR02437  48 aqsdlkgllltsdkdafivGaditeflelfakpeeellqwleeansvfnkledlpvptvaavkGfalGGGlevvlatdfriad.ktakiGlpetklGilpGfGGtvrlprliGadsaleiiaaGkevraedalkvglvdavvkaekleaaalqllkdaine 207
                 ++ d++++ll++   +f  G d  +f +  ++++ e+lq   + n++++++   p  +vaav G +l GG ++  ++d+ +a+ ++a+  +p ++lG +     +v l + +Ga +ale+    +e  a++a+++gl + vv   +  ++  +++ + +++
  MMETSP1137-20121227|2036_1  59 QNGDVRAILLEATGPTFSSGHDFRDFQGASQHEQREVLQICGNVNKLLTRV---PQVSVAAVTGNCLAGGAQLAASCDLLLAErESARFCFPGVRLGGFC-HTPAVPLVQRVGARKALEMTVLAREIDADEAFRIGLANLVVPRAEWRVTVDEMMAQLVAG 215
                 6789************************************99999998876...556789********************9973579*********9443.34456777779******************************9999999998888887765 PP

>> TIGR02441  fa_ox_alpha_mit: fatty acid oxidation complex, alpha subunit, mitochondrial
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.2   0.0   2.6e-15   1.5e-12      12     196 ..       5     196 ..       1     224 [. 0.78

  Alignments for each domain:
  == domain 1    score: 44.2 bits;  conditional E-value: 2.6e-15
   TIGR02441  12 rthlsvevkgdvavvkidspnskvntlskelsaefkevldeletnea.......vks....avlisskpgsfvaGadidmlkackt..aeevtqlsreaqklleklekskkpivaaisGsclGGGlelalachyriatkdkktllglpevllGllpGaGgtqrlpklvsvpaaldleltGkkikadrakklGlvdrlv 196
                  th     +++++ +++     + n+lsk + +e++++l++  +++a       v+     a+l+ +   +f +G d   ++       +ev q+  + +kll+++ +     vaa++G cl GG +la +c+  +a +++ + +  p v lG +  + + + l + v+ ++al++++  ++i ad a ++Gl + +v
  MMETSP1137-20121227|2036_1   5 DTHAIHRDEQGLLTIRLTC-GKRHNALSKPILQELQDILEQCASSHApeessdpVQNgdvrAILLEATGPTFSSGHDFRDFQGASQheQREVLQICGNVNKLLTRVPQ---VSVAAVTGNCLAGGAQLAASCDLLLAERES-ARFCFPGVRLGGFCHTPA-VPLVQRVGARKALEMTVLAREIDADEAFRIGLANLVV 196
                 5666666666777888765.56789**************99876543211222243233336778888889******9887754440145677777777888777765...569**********************99876.6789*******8876654.5677889999**********************99887 PP

>> TIGR02440  FadJ: fatty oxidation complex, alpha subunit FadJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.5   0.1     8e-14   4.7e-11      11     188 ..      14     200 ..       6     267 .. 0.71

  Alignments for each domain:
  == domain 1    score: 39.5 bits;  conditional E-value: 8e-14
   TIGR02440  11 iailtidv.pgeklntlkaefadqvaeilkqlk............ekkelrglvlvsgkpdsfiagadismlaacktadeakalaqkgqellaelealpikvvaaihgaclggglelalachsrvcsdddktvlglpevqlgllpgsggtqrlprlvgvskaldmiltgkqlrakqalklglvddvvpksi 188
                  ++lti +  g++ n+l   + +++++il+q              ++ ++r + l+ +   +f +g d + ++     ++ ++l   g ++   l  +p   vaa+ g cl gg +la +c     ++ + +++ +p v+lg +  +     l + vg  kal+m +  +++ a +a ++gl + vvp++ 
  MMETSP1137-20121227|2036_1  14 QGLLTIRLtCGKRHNALSKPILQELQDILEQCAsshapeessdpvQNGDVRAI-LLEATGPTFSSGHDFRDFQGASQHEQREVLQICG-NVNKLLTRVPQVSVAAVTGNCLAGGAQLAASCDLL-LAERESARFCFPGVRLGGFCHTPAV-PLVQRVGARKALEMTVLAREIDADEAFRIGLANLVVPRAE 200
                 55556654135666777777777777777665411111111111123345554.4556666899999999998877666666665555.5677788889999*******************865.56778899*********88776554.455669*******************************963 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (273 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       124  (0.0302292); expected 82.0 (0.02)
Passed bias filter:                       99  (0.0241346); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.30u 0.14s 00:00:00.44 Elapsed: 00:00:00.44
# Mc/sec: 818.93
//
Query:       MMETSP1137-20121227|2037_1  [L=166]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      9e-16   55.7   0.2    1.2e-15   55.3   0.1    1.1  1  TIGR00103 DNA_YbaB_EbfC: DNA-binding protein, YbaB/EbfC family


Domain annotation for each model (and alignments):
>> TIGR00103  DNA_YbaB_EbfC: DNA-binding protein, YbaB/EbfC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.3   0.1     3e-19   1.2e-15       6      96 ..      62     153 ..      51     164 .. 0.90

  Alignments for each domain:
  == domain 1    score: 55.3 bits;  conditional E-value: 3e-19
   TIGR00103   6 g..nlqellkqaqkvqekikklqeelkklevtgksgaglvkveinGekelksveIdpsllddedkealeeliteAlndAvkkvkekikekvtk 96 
                 g  n+ e +k+aq+v  k+k+lq+el ++e++ ++++  v+v+i+G++ ++sv+I ++ll  +++ a +e +  A+ +A +k+ e  ke++++
  MMETSP1137-20121227|2037_1  62 GglNMMETIKKAQQVGVKVKELQQELMDTEIEATAADEGVTVTISGAQVPLSVSISDELLG-KGASAVSEAVSIATREAHNKSLEYAKERMSE 153
                 15699********************************************************.*********************9999996655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (166 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       308  (0.0750853); expected 82.0 (0.02)
Passed bias filter:                      199  (0.0485129); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.20u 0.16s 00:00:00.36 Elapsed: 00:00:00.31
# Mc/sec: 706.78
//
Query:       MMETSP1137-20121227|2038_1  [L=493]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (493 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       115  (0.0280351); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.14s 00:00:00.49 Elapsed: 00:00:00.47
# Mc/sec: 1384.48
//
Query:       MMETSP1137-20121227|2039_1  [L=359]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (359 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        58  (0.0141394); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.16s 00:00:00.43 Elapsed: 00:00:00.32
# Mc/sec: 1480.75
//
Query:       MMETSP1137-20121227|2040_1  [L=550]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (550 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        41  (0.00999512); expected 82.0 (0.02)
Passed bias filter:                       30  (0.00731351); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.16s 00:00:00.48 Elapsed: 00:00:00.45
# Mc/sec: 1613.20
//
Query:       MMETSP1137-20121227|2041_1  [L=697]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (697 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        73  (0.0177962); expected 82.0 (0.02)
Passed bias filter:                       39  (0.00950756); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.27s 00:00:00.57 Elapsed: 00:00:00.84
# Mc/sec: 1095.20
//
Query:       MMETSP1137-20121227|2042_1  [L=491]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (491 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       108  (0.0263286); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.18s 00:00:00.49 Elapsed: 00:00:00.44
# Mc/sec: 1472.88
//
Query:       MMETSP1137-20121227|2043_1  [L=163]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (163 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        65  (0.0158459); expected 82.0 (0.02)
Passed bias filter:                       37  (0.00901999); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.16s 00:00:00.33 Elapsed: 00:00:00.30
# Mc/sec: 717.14
//
Query:       MMETSP1137-20121227|2044_1  [L=346]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0042   12.7   7.8     0.0052   12.4   5.4    1.0  1  TIGR02168 SMC_prok_B: chromosome segregation protein SMC
     0.0063   12.0   3.3     0.0079   11.7   2.3    1.1  1  TIGR02169 SMC_prok_A: chromosome segregation protein SMC


Domain annotation for each model (and alignments):
>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.4   5.4   2.5e-06    0.0052     817     960 ..     103     246 ..      67     267 .. 0.57

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 2.5e-06
   TIGR02168 817 lkeeaaekeerleslekeiaalekeleeleeqieeleeeiesleaeieeleeeleeleeeleellkekasleealaelreeleelseelrelekkvkelereleelreklaqlelrleeleveiaelqerlseeyeleleeaee 960
                 l++ ++++++rles   + a+ ++++e  ++q +++ +++ +le+ +  + ++l+++ + l+ l+ +++ l+++ +++ +  e l +++ +l++++++ +  +  +++ + +    ++el+ + ael+++++e  +  l+++ +
  MMETSP1137-20121227|2044_1 103 LNDMFQRQARRLESQLYQRAQDQRTIEYSQQQVQKAMAQVRALEEHHVLQAARLSQSAKSLQILQRQMRGLSAEHERALSLAEGLLQDVFQLSNALQRERPGAIDKMQLNFRSAPPISELRSKAAELTASMQETERSALQQIGA 246
                 445555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555544 PP

>> TIGR02169  SMC_prok_A: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.7   2.3   3.8e-06    0.0079     334     470 ..     102     238 ..      75     259 .. 0.68

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 3.8e-06
   TIGR02169 334 klkeeieelereieeekkereklkeelkelkeeleelraeleevdkeaaelreelkelkekleklkeelnelkreldrlleelkrleeelaelkaelerieekiaeleeeleelaeeikkaeqkleqlkedlekaek 470
                  l+   +  +r++e++  +r++ +  ++ ++++ ++ +a++ ++++++    ++l++  + l+ l++++  l  e++r l  ++ l +++ +l ++l+r +    +  +     a  i++ + k+ +l + +++ e+
  MMETSP1137-20121227|2044_1 102 MLNDMFQRQARRLESQLYQRAQDQRTIEYSQQQVQKAMAQVRALEEHHVLQAARLSQSAKSLQILQRQMRGLSAEHERALSLAEGLLQDVFQLSNALQRERPGAIDKMQLNFRSAPPISELRSKAAELTASMQETER 238
                 44445555667777777777777777777777777777777777777777777777777777777777777777777777777777777777777777766443333333334444555555555555555555444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (346 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       236  (0.0575329); expected 82.0 (0.02)
Passed bias filter:                      106  (0.0258411); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.33u 0.17s 00:00:00.50 Elapsed: 00:00:00.36
# Mc/sec: 1268.56
//
Query:       MMETSP1137-20121227|2045_1  [L=446]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (446 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        95  (0.0231594); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.12s 00:00:00.43 Elapsed: 00:00:00.43
# Mc/sec: 1369.00
//
Query:       MMETSP1137-20121227|2047_1  [L=280]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (280 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        45  (0.0109703); expected 82.0 (0.02)
Passed bias filter:                       39  (0.00950756); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.13s 00:00:00.36 Elapsed: 00:00:00.68
# Mc/sec: 543.48
//
Query:       MMETSP1137-20121227|2048_1  [L=232]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (232 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        59  (0.0143832); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.14s 00:00:00.33 Elapsed: 00:00:00.37
# Mc/sec: 827.61
//
Query:       MMETSP1137-20121227|2049_1  [L=106]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (106 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       102  (0.0248659); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.18s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 499.67
//
Query:       MMETSP1137-20121227|2050_1  [L=182]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.3e-13   47.5   0.0      3e-13   47.1   0.0    1.1  1  TIGR00132 gatA: aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, A subunit
    2.1e-05   21.5   0.0    2.5e-05   21.2   0.0    1.1  1  TIGR02715 amido_AtzE: amidohydrolase, AtzE family
     0.0019   14.6   0.0      0.002   14.5   0.0    1.1  1  TIGR02713 allophanate_hyd: allophanate hydrolase


Domain annotation for each model (and alignments):
>> TIGR00132  gatA: aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, A subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.1   0.0   2.2e-16     3e-13     365     464 ..      56     160 ..      54     162 .. 0.87

  Alignments for each domain:
  == domain 1    score: 47.1 bits;  conditional E-value: 2.2e-16
   TIGR00132 365 AqkvrtliidefeklfeevDvivsptaptlafklgekaed.....plemylsDv.ltvpanlaGlpaisvPlgkkekglpiGlqiigkafddkkllsvakaleqal 464
                 A+ +r+   de   +f + D+ + p+a +++f + +   +      ++ y   + + +pa+l Glpa++vP+g++ +g+ +G+qi++k+ +d  ll +++a+e+a+
  MMETSP1137-20121227|2050_1  56 AKALRNEWLDEAARIFASHDFFLLPSAQVFPFDVSQAYPKsiggtQMDTYHRWMeVSIPASLLGLPALAVPCGQA-HGQHMGMQIVAKHGADGALLAFGRAYESAF 160
                 67788999999***********************999888455445556665544689*****************.7**************************987 PP

>> TIGR02715  amido_AtzE: amidohydrolase, AtzE family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.0   1.8e-08   2.5e-05     344     444 ..      55     156 ..      18     161 .. 0.85

  Alignments for each domain:
  == domain 1    score: 21.2 bits;  conditional E-value: 1.8e-08
   TIGR02715 344 qaqrfrrvfrdkvrelfervdvllaPatpisapkigqet.leldgvelsvranlGiftqPisfiglPvlavPvkrpeklPiGvqliaaPwredlllrvaavl 444
                  a+ +r+ + d+   +f + d +l P++ +    + q+    + g+++           P s++glP lavP  +++   +G+q++a    +  ll+ + + 
  MMETSP1137-20121227|2050_1  55 XAKALRNEWLDEAARIFASHDFFLLPSAQVFPFDVSQAYpKSIGGTQMDTYHRWMEVSIPASLLGLPALAVPCGQAHGQHMGMQIVAKHGADGALLAFGRAY 156
                 5888999999*******************999999998725799****9999999999*****************************999988888877665 PP

>> TIGR02713  allophanate_hyd: allophanate hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.0   1.5e-06     0.002     317     418 ..      59     165 ..      15     175 .. 0.78

  Alignments for each domain:
  == domain 1    score: 14.5 bits;  conditional E-value: 1.5e-06
   TIGR02713 317 rlaelkrkaeallasvdvllvPtaplip.tieevaadPvtlnaelGtytnfvn......LldlaavAvPagfrsdglPfgvtliapafkdaalaelakrlqaasalklg 418
                  ++e   +a++++as d +l+P+a ++p ++++     ++  +++ ty  ++       Ll l a+AvP g  + g  +g+ ++a+ ++d al+++++++++a a  ++
  MMETSP1137-20121227|2050_1  59 LRNEWLDEAARIFASHDFFLLPSAQVFPfDVSQAYPKSIG-GTQMDTYHRWMEvsipasLLGLPALAVPCGQAH-GQHMGMQIVAKHGADGALLAFGRAYESAFAEAAS 165
                 4566667788899999999999988765255555555554.57888888876433333399*********9876.*************************998766555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (182 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        52  (0.0126767); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.18u 0.15s 00:00:00.32 Elapsed: 00:00:00.33
# Mc/sec: 727.94
//
Query:       MMETSP1137-20121227|2051_1  [L=192]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (192 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       105  (0.0255973); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.15s 00:00:00.36 Elapsed: 00:00:00.25
# Mc/sec: 1013.68
//
Query:       MMETSP1137-20121227|2052_1  [L=411]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (411 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        95  (0.0231594); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.13s 00:00:00.42 Elapsed: 00:00:00.40
# Mc/sec: 1356.19
//
Query:       MMETSP1137-20121227|2053_1  [L=1353]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.7e-58  196.0   0.0    2.7e-58  195.4   0.0    1.2  1  TIGR01982 UbiB: 2-polyprenylphenol 6-hydroxylase


Domain annotation for each model (and alignments):
>> TIGR01982  UbiB: 2-polyprenylphenol 6-hydroxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  195.4   0.0   6.6e-62   2.7e-58      47     327 ..     631     914 ..     598     924 .. 0.93

  Alignments for each domain:
  == domain 1    score: 195.4 bits;  conditional E-value: 6.6e-62
   TIGR01982  47 slgerlrlaleelGPifiKlGQvlstRaDllpeeiaeeLslLqdkvppfdlkaarkvieaelgk.pveelFaefeekPlAaASiaQvhkAvlvegkeVavKvlRPgiekkieadikllellaklvekllpeakrlrptevvkefektlkeEldlrlEaanaselkenfkndk.klivPevyweltservltlewidgipvsdleklkeaGldlkalaenlvesflkqvlrdgfFHaDlHpGNilvakdgki....ialDfGivgrlseeerrylaeillgflerdyk 327
                 +++  lr  + +lG  ++K+GQ l++R+D+ pe +++eLs+L d+ p  + +++ +++ +elg+  ++ + + ++e+Pl+ ASiaQvh+A+l++g++V++Kv+  ++++ +++d+   e la+++  l p+++   ++ ++ke ++  ++Eld+++Eaan + +  n+k ++ + + Pev+ +lt++r l++ + +g++++d ekl++a +dlk l  ++ e   +q++ +g F  D+HpGNilv+  ++i    ++lDfG+  rl++eer  + ++llg+ e d +
  MMETSP1137-20121227|2053_1 631 RAARILRVRMVALGGLWVKIGQYLASRSDVTPEPLVNELSHLMDANPHRPISEIAATLVEELGEaDLKRSLRAIDETPLSVASIAQVHTAWLLDGSKVVLKVMHRDVDTLMRQDLIHSEILASILAYLEPDFD---FRPLIKEANSEHAKELDFTTEAANLTDVSSNLKTSAvNAVLPEVIPSLTTRRCLVMRFEEGTSLKDAEKLRSANIDLKLLLFRICEAWAAQMFVHGTFNCDPHPGNILVRDLPEIgpvpVLLDFGLTKRLTNEERLGFCQLLLGMSEMDGD 914
                 34555788899*****************************************************999999***********************************************************9987...8889****************************988637888*********************************************************************99666444489************************998865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1353 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       142  (0.0346173); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.77u 0.15s 00:00:00.92 Elapsed: 00:00:00.62
# Mc/sec: 2880.34
//
Query:       MMETSP1137-20121227|2054_1  [L=372]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.8e-29   98.5   0.0    1.2e-28   97.9   0.0    1.2  1  TIGR03598 GTPase_YsxC: ribosome biogenesis GTP-binding protein YsxC
    2.6e-12   44.3   0.0    3.2e-12   44.0   0.0    1.1  1  TIGR03594 GTPase_EngA: ribosome-associated GTPase EngA
    2.6e-09   34.7   0.0    5.6e-09   33.6   0.0    1.5  1  TIGR03596 GTPase_YlqF: ribosome biogenesis GTP-binding protein YlqF
      8e-09   33.3   0.0    1.4e-08   32.5   0.0    1.4  1  TIGR00231 small_GTP: small GTP-binding protein domain
    1.1e-08   32.1   0.0    2.1e-08   31.2   0.0    1.4  1  TIGR03918 GTP_HydF: [FeFe] hydrogenase H-cluster maturation GTPase HydF
    8.5e-08   29.5   0.0    1.4e-07   28.8   0.0    1.3  1  TIGR03597 GTPase_YqeH: ribosome biogenesis GTPase YqeH
    1.4e-07   28.8   0.0    1.8e-07   28.4   0.0    1.2  1  TIGR00450 mnmE_trmE_thdF: tRNA modification GTPase TrmE
    2.4e-05   21.3   0.0    5.1e-05   20.3   0.0    1.5  1  TIGR02729 Obg_CgtA: Obg family GTPase CgtA
    2.6e-05   21.5   0.0    3.8e-05   21.0   0.0    1.4  1  TIGR00436 era: GTP-binding protein Era
    0.00014   19.3   0.0     0.0013   16.1   0.0    2.1  2  TIGR00157 TIGR00157: ribosome small subunit-dependent GTPase A
    0.00057   16.7   0.1     0.0016   15.2   0.0    1.8  1  TIGR03156 GTP_HflX: GTP-binding protein HflX
     0.0011   15.8   0.2     0.0024   14.7   0.0    1.6  2  TIGR02857 CydD: thiol reductant ABC exporter, CydD subunit
  ------ inclusion threshold ------
      0.017   12.4   0.0      0.029   11.6   0.0    1.3  1  TIGR02324 CP_lyasePhnL: phosphonate C-P lyase system protein PhnL
      0.018   12.5   0.0      0.038   11.4   0.0    1.5  1  TIGR03263 guanyl_kin: guanylate kinase
      0.019   11.5   0.0      0.028   11.0   0.0    1.2  1  TIGR00437 feoB: ferrous iron transport protein B


Domain annotation for each model (and alignments):
>> TIGR03598  GTPase_YsxC: ribosome biogenesis GTP-binding protein YsxC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.9   0.0   4.4e-31   1.2e-28      15     159 ..     155     303 ..     144     318 .. 0.85

  Alignments for each domain:
  == domain 1    score: 97.9 bits;  conditional E-value: 4.4e-31
   TIGR03598  15 edklpeiafaGrSNvGKSsliNaLtnrkklartSktPGrTqlinffevneelrlvDlPGYGy..akvskeekekwqklieeYLekrenLkgvvllvDirhelkelDlellellkeakipvlvvltKaDklkkselkk..alkkvkkelk 159
                  ++lp i++aG SN+GKSsliN L+++ ++ar+S+  G+T+++ + evne+l++ DlPG      +v++   ++w+ l  +YL++++++++++ + Dir +++ + +++l+ ++e+++pvl+vl+K Dkl  ++ +   ++++++++++
  MMETSP1137-20121227|2054_1 155 LQELPHICVAGESNAGKSSLINHLLKKXNVARASSVAGKTRSVDMLEVNERLVITDLPGLPSrdHQVERMWDSSWRPLTLQYLRDCRAIRAMLYVHDIRWKISYMIRDFLRDVEETGVPVLLVLSKDDKLLVEAENMgtTQHELRTKMS 303
                 57899******************************************************98722467788899********************************************************97665544004444444433 PP

>> TIGR03594  GTPase_EngA: ribosome-associated GTPase EngA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.0   0.0   1.2e-14   3.2e-12     173     321 ..     156     307 ..     107     369 .. 0.81

  Alignments for each domain:
  == domain 1    score: 44.0 bits;  conditional E-value: 1.2e-14
   TIGR03594 173 eepikiaiiGrpNvGKStLvNallgeervi.vsdiaGtTrDsidievevkgkkylliDTAGirrkkk.veekveklsvlrtlkaiera...dvvllvlDategiseqDlkiaglileegkalvivvNKwDlv.kdekeleelkkeleeklkflkf 321
                 +e  +i++ G  N+GKS+L+N+ll++  v  +s++aG Tr    +++   +++++++D  G+  + + ve+  +      tl+ ++++     +l+v D++ +is      ++ ++e+g ++++v+ K D++  +++++ ++++el++k++ + f
  MMETSP1137-20121227|2054_1 156 QELPHICVAGESNAGKSSLINHLLKKXNVArASSVAGKTRS---VDMLEVNERLVITDLPGLPSRDHqVERMWDSSWRPLTLQYLRDCraiRAMLYVHDIRWKISYMIRDFLRDVEETGVPVLLVLSKDDKLlVEAENMGTTQHELRTKMSNAVF 307
                 34568*******************9987754899******4...4556667899********766550555556655566777777661115689999*********************************9999************99987654 PP

>> TIGR03596  GTPase_YlqF: ribosome biogenesis GTP-binding protein YlqF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.6   0.0     2e-11   5.6e-09     119     173 ..     159     214 ..     130     223 .. 0.86

  Alignments for each domain:
  == domain 1    score: 33.6 bits;  conditional E-value: 2e-11
   TIGR03596 119 iralvvGiPNvGKStliNrlakk.kvakvgnkpgvTksqqwiklskeleLlDtPGi 173
                  +++v G  N GKS+liN+l+kk +va++   +g T+s  +++++++l ++D PG+
  MMETSP1137-20121227|2054_1 159 PHICVAGESNAGKSSLINHLLKKxNVARASSVAGKTRSVDMLEVNERLVITDLPGL 214
                 468899**************998467788899***********************6 PP

>> TIGR00231  small_GTP: small GTP-binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.5   0.0   5.2e-11   1.4e-08       5     144 ..     160     307 ..     156     316 .. 0.75

  Alignments for each domain:
  == domain 1    score: 32.5 bits;  conditional E-value: 5.2e-11
   TIGR00231   5 kivivGhvdvGKstLlnsllknk.isiteskpgvtrdyvteqieedGktykvnllDTaG....qedfdairrly.vreverslevvdiv...ilvldveeglekqtkeiiheakkkgvpiilvvnKiDlkd....dlktkvkslfaklnaepi 144
                  i + G++++GKs+L+n llk+  ++  +s++g tr++ +   e++    ++ + D++G      +++++++ +  + + + l+++  +   ++v d++++     + + + +++ gvp++lv++K D+      ++ t + +l+ k++++ +
  MMETSP1137-20121227|2054_1 160 HICVAGESNAGKSSLINHLLKKXnVARASSVAGKTRSVDM--LEVNE---RLVITDLPGlpsrDHQVERMWDSSwRPLTLQYLRDCRAIramLYVHDIRWKISYMIRDFLRDVEETGVPVLLVLSKDDKLLveaeNMGTTQHELRTKMSNAVF 307
                 799****************998713444555577777666..46666...699********9966777899988677888899888765111566666666666666667778889************9777778788888888888877655 PP

>> TIGR03918  GTP_HydF: [FeFe] hydrogenase H-cluster maturation GTPase HydF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.2   0.0   7.7e-11   2.1e-08       8     140 ..     159     299 ..     154     321 .. 0.71

  Alignments for each domain:
  == domain 1    score: 31.2 bits;  conditional E-value: 7.7e-11
   TIGR03918   8 lhialfGrrNaGKSsliNaltgq.dvaivsdvpGtTtDpvekamEllplG.pvvliDTaGldDegeLGelRvek.....trevlek...tdlallvvdaeaeleeleeelleelkekkipvivvlnkidlkeeeke...keklekk 140
                  hi + G+ NaGKSsliN l+++ +va  s+v+G T      ++++l++    v++D +Gl  + +  e   +      t + l+    +  +l+v d + +++ + +++l++++e+ +pv++vl+k d+   e+e   ++++e +
  MMETSP1137-20121227|2054_1 159 PHICVAGESNAGKSSLINHLLKKxNVARASSVAGKTR-----SVDMLEVNeRLVITDLPGLPSRDHQVERMWDSswrplTLQYLRDcraIRAMLYVHDIRWKISYMIRDFLRDVEETGVPVLLVLSKDDKLLVEAEnmgTTQHELR 299
                 69****************99865389********984.....4555554416899******876554444333311112566665511156789***********************************87665542233333333 PP

>> TIGR03597  GTPase_YqeH: ribosome biogenesis GTPase YqeH
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.8   0.0   5.1e-10   1.4e-07     151     231 ..     154     230 ..     133     244 .. 0.83

  Alignments for each domain:
  == domain 1    score: 28.8 bits;  conditional E-value: 5.1e-10
   TIGR03597 151 karekkdvyvvGvtNVGKSsliNkllklnkgkkkvittSkfpgTTldlieipldkesvllDtpGiineeqianllskkdlk 231
                 + +e   + v G +N GKSsliN+llk+ +    v   S+  g T  + + +++++ v+ D pG+ ++++ ++ + + +++
  MMETSP1137-20121227|2054_1 154 ELQELPHICVAGESNAGKSSLINHLLKKXN----VARASSVAGKTRSVDMLEVNERLVITDLPGLPSRDHQVERMWDSSWR 230
                 55555678899***************8777....5556***************************9888887777776665 PP

>> TIGR00450  mnmE_trmE_thdF: tRNA modification GTPase TrmE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.4   0.0   6.6e-10   1.8e-07     195     355 ..     146     306 ..     117     364 .. 0.65

  Alignments for each domain:
  == domain 1    score: 28.4 bits;  conditional E-value: 6.6e-10
   TIGR00450 195 dllnsrkkleklkdglklaivGktNvGKSSLlNallkk.draiVsdikGttRDvvEedleleGilvkllDtAGiReaadkvEklGiek....slkaikeadlv...lyvlDaskpltkdd.eliitlkkkkkdlllvlNKiDLaeleilkselkltvsllsakqlkikel 355
                 ++l+ + ++ +l++   + ++G+ N+GKSSL+N llkk + a  s++ G tR v  + le++  lv + D  G+   + +vE++        +l+ ++++  +   lyv D++        + + +++ +  ++llvl K D    e ++      +++ + +++ ++++
  MMETSP1137-20121227|2054_1 146 QMLE-Q-GILELQELPHICVAGESNAGKSSLINHLLKKxNVARASSVAGKTRSV--DMLEVNERLV-ITDLPGLPSRDHQVERMWDSSwrplTLQYLRDCRAIramLYVHDIRWKISYMIrDFLRDVEETGVPVLLVLSKDDKLLVEAENM----GTTQHELRTKMSNAV 306
                 5555.2.444566666799***************9987356899********87..7899998776.99*************986432122255666777654333777777766544433567777777888888888888543333333....233333344444444 PP

>> TIGR02729  Obg_CgtA: Obg family GTPase CgtA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   0.0   1.9e-07   5.1e-05     140     248 ..     141     255 ..     127     323 .. 0.65

  Alignments for each domain:
  == domain 1    score: 20.3 bits;  conditional E-value: 1.9e-07
   TIGR02729 140 ekGeegeerelkleLklladvglvGlpnaGkStllsavsaakpkiadYpFtTlvPnLGvveveeeksfvlaDiPgliegasega........gLGleFLkHiertrvllhlidlsee 248
                 + G++   ++  leL+ l ++ + G +naGkS+l++++ +      +   +  + ++ ++ev+e  ++v+ D+Pgl +  ++           L l++L+     r +l++ d++ +
  MMETSP1137-20121227|2054_1 141 RCGSSQMLEQGILELQELPHICVAGESNAGKSSLINHLLKKXNVARASSVAGKTRSVDMLEVNE--RLVITDLPGLPSRDHQVErmwdsswrPLTLQYLRDCRAIRAMLYVHDIRWK 255
                 556666667778*************************987554444566788888999999988..9*********88777654111111114566666666666666666665544 PP

>> TIGR00436  era: GTP-binding protein Era
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.0   0.0   1.4e-07   3.8e-05       3      68 ..     161     224 ..     159     310 .. 0.85

  Alignments for each domain:
  == domain 1    score: 21.0 bits;  conditional E-value: 1.4e-07
   TIGR00436   3 vailGrpnvGKSTLlNkllgq.kisivSpkaqTTrnrisgiltegasqiifiDtPGlhekkhklnel 68 
                 + + G +n+GKS L+N+ll++ +++  S++a  Tr      + e +++ +  D PGl  + h+++++
  MMETSP1137-20121227|2054_1 161 ICVAGESNAGKSSLINHLLKKxNVARASSVAGKTRS---VDMLEVNERLVITDLPGLPSRDHQVERM 224
                 8899*************9987256779999999994...467778889999*******999999876 PP

>> TIGR00157  TIGR00157: ribosome small subunit-dependent GTPase A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0   4.9e-06    0.0013     126     186 ..     162     217 ..     136     227 .. 0.76
   2 ?    0.7   0.0      0.25        68      57      88 ..     259     290 ..     250     317 .. 0.72

  Alignments for each domain:
  == domain 1    score: 16.1 bits;  conditional E-value: 4.9e-06
   TIGR00157 126 vfaGqSGVGKSSLiNlldpevkqkvkevseklklGkhTTtsvelfhl.qgGliiDtPGfnel 186
                  +aG+S  GKSSLiN+l+ + +  v  +s+    Gk  T+sv + ++ +  +i D PG+ + 
  MMETSP1137-20121227|2054_1 162 CVAGESNAGKSSLINHLLKKXN--VARASSVA--GK--TRSVDMLEVnERLVITDLPGLPSR 217
                 579**************98654..55455554..54..899999999666677899998665 PP

  == domain 2    score: 0.7 bits;  conditional E-value: 0.25
   TIGR00157  57 lldrlLvvaeakniepiivlnkkdlleeedae 88 
                 ++  +L  +e++++  ++vl k d+l  e  +
  MMETSP1137-20121227|2054_1 259 MIRDFLRDVEETGVPVLLVLSKDDKLLVEAEN 290
                 5777999999************9986444333 PP

>> TIGR03156  GTP_HflX: GTP-binding protein HflX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0   5.8e-06    0.0016     185     243 ..     154     210 ..     113     312 .. 0.77

  Alignments for each domain:
  == domain 1    score: 15.2 bits;  conditional E-value: 5.8e-06
   TIGR03156 185 kksevptvalvGYTNaGKstllnaltkaevlaedklFATLdpttrrlklpe.eeevlltD 243
                 + +e+p++ + G  NaGKs+l+n+l k+  +a+    A    +tr +++ e +e++++tD
  MMETSP1137-20121227|2054_1 154 ELQELPHICVAGESNAGKSSLINHLLKKXNVARASSVA---GKTRSVDMLEvNERLVITD 210
                 45789**********************98887766555...3555554333134566666 PP

>> TIGR02857  CydD: thiol reductant ABC exporter, CydD subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0   8.7e-06    0.0024     307     379 ..     116     189 ..      99     207 .. 0.74
   2 ?   -2.5   0.0       1.5     4e+02      63     100 ..     315     351 ..     282     361 .. 0.60

  Alignments for each domain:
  == domain 1    score: 14.7 bits;  conditional E-value: 8.7e-06
   TIGR02857 307 peaekapltaaass.slelenvsvayegrkpalkevsltvepgelvalvGaSGaGKstllklllgfvepteGai 379
                 ++a +++l+++++  +   ++v v   g++++l++  l+++   ++ ++G+S aGKs+l++ ll   ++++ + 
  MMETSP1137-20121227|2054_1 116 QTAAEKELDDDRFLvRNVRNDVRVLRCGSSQMLEQGILELQELPHICVAGESNAGKSSLINHLLKKXNVARASS 189
                 45555555555554322235688888999999********************************9988766554 PP

  == domain 2    score: -2.5 bits;  conditional E-value: 1.5
   TIGR02857  63 lkeaaaaraaaevksqlrerllekvaalGpavlqkkks 100
                 ++ +++   ++  +++ r+++l+ + +l++   + ++s
  MMETSP1137-20121227|2054_1 315 VHIHYSCDNSLPFSRNARRQILRYIEQLSALSSR-EES 351
                 4445666777777888888888888888776555.444 PP

>> TIGR02324  CP_lyasePhnL: phosphonate C-P lyase system protein PhnL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   0.00011     0.029      24      85 ..     148     208 ..     133     210 .. 0.82

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 0.00011
   TIGR02324  24 lkevsleveaGelvalsGksGaGkstllkslyanYlpesgrilvrhegeivdlvkaserevl 85 
                 l++  le+++   ++++G+s aGks+l+  l ++  ++ ++  v  +   vd+++++er v+
  MMETSP1137-20121227|2054_1 148 LEQGILELQELPHICVAGESNAGKSSLINHLLKKXNVARASS-VAGKTRSVDMLEVNERLVI 208
                 56666778888889******************9999986654.4555788999999999876 PP

>> TIGR03263  guanyl_kin: guanylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00014     0.038       4      43 ..     161     201 ..     159     205 .. 0.79

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 0.00014
   TIGR03263   4 ivisgpsGvGKstlvkklle.ekeelklsvSattRkpRegE 43 
                 i ++g s +GKs+l+++ll+  +   + sv+  tR+    E
  MMETSP1137-20121227|2054_1 161 ICVAGESNAGKSSLINHLLKkXNVARASSVAGKTRSVDMLE 201
                 5689****************445556778888999866555 PP

>> TIGR00437  feoB: ferrous iron transport protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0    0.0001     0.028       1      51 [.     165     214 ..     165     221 .. 0.76

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 0.0001
   TIGR00437   1 GnpNvGKstlfnaLtgsn..qkvgNwpGvTVekkegklelkgedieivDlPGi 51 
                 G+ N GKs+l+n+L ++   ++ +  +G+T      +++   e++ i+DlPG+
  MMETSP1137-20121227|2054_1 165 GESNAGKSSLINHLLKKXnvARASSVAGKTRSVDMLEVN---ERLVITDLPGL 214
                 899**********98765225778899999444433333...6788******7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (372 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       192  (0.0468064); expected 82.0 (0.02)
Passed bias filter:                      170  (0.0414432); expected 82.0 (0.02)
Passed Vit filter:                        43  (0.0104827); expected 4.1 (0.001)
Passed Fwd filter:                        15  (0.00365675); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.45u 0.18s 00:00:00.63 Elapsed: 00:00:00.45
# Mc/sec: 1091.11
//
Query:       MMETSP1137-20121227|2055_1  [L=399]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (399 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       127  (0.0309605); expected 82.0 (0.02)
Passed bias filter:                      107  (0.0260848); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.18s 00:00:00.49 Elapsed: 00:00:00.35
# Mc/sec: 1504.68
//
Query:       MMETSP1137-20121227|2056_1  [L=184]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.5e-41  138.8  12.5    3.6e-41  138.3   8.6    1.2  1  TIGR00855 L12: ribosomal protein L7/L12
     0.0034   15.5   0.1     0.0051   15.0   0.1    1.2  1  TIGR03627 arch_S9P: archaeal ribosomal protein S9P


Domain annotation for each model (and alignments):
>> TIGR00855  L12: ribosomal protein L7/L12
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  138.3   8.6   1.8e-44   3.6e-41       1     125 []      53     184 .]      53     184 .] 0.90

  Alignments for each domain:
  == domain 1    score: 138.3 bits;  conditional E-value: 1.8e-44
   TIGR00855   1 maklskeeiiealkeltvlelselvkalEekfgvsAaa......avaaaaaaaaa.aeaaeektEfdvilk.aaadkkiavikvvreitGlgLkEAkelvekaPkalkekvskeeAeelkkkleeaGakvevk 125
                 m+  + +e++e+lk++t+le++elvk++Ee+f+v A+a      ++a a+aaaaa aeaaeek+Efd++l+  +adkkiav+k+vreitGlgLkEAke+ve+aPka+ke+ sk++ ee  kkl+e Ga+v++k
  MMETSP1137-20121227|2056_1  53 MS-AAVDEVMEKLKSMTLLEAAELVKQIEETFDVDASAggggmmMMAGAPAAAAApAEAAEEKSEFDLVLEgFPADKKIAVLKLVREITGLGLKEAKEVVESAPKAIKEGASKADCEEAMKKLQELGATVAMK 184
                 55.6789****************************997444432345555555669***************889********************************************************987 PP

>> TIGR03627  arch_S9P: archaeal ribosomal protein S9P
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.1   2.5e-06    0.0051      24      80 ..      50     106 ..      34     115 .. 0.81

  Alignments for each domain:
  == domain 1    score: 15.0 bits;  conditional E-value: 2.5e-06
   TIGR03627  24 vrinkvpvelieielarlkilePlllaedvakevDidvkvsGGGimgqaeaartaia 80 
                   + +  v+ +  +l+ + +le   l++++ +  D+d +  GGG+m  a a   a a
  MMETSP1137-20121227|2056_1  50 TPVMSAAVDEVMEKLKSMTLLEAAELVKQIEETFDVDASAGGGGMMMMAGAPAAAAA 106
                 5566777888889999*****************************988887665554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (184 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       263  (0.0641151); expected 82.0 (0.02)
Passed bias filter:                      170  (0.0414432); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.20u 0.17s 00:00:00.37 Elapsed: 00:00:00.45
# Mc/sec: 539.69
//
Query:       MMETSP1137-20121227|2057_1  [L=365]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (365 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       119  (0.0290102); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.17s 00:00:00.47 Elapsed: 00:00:00.45
# Mc/sec: 1070.58
//
Query:       MMETSP1137-20121227|2058_1  [L=450]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (450 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       224  (0.0546075); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.15s 00:00:00.52 Elapsed: 00:00:00.45
# Mc/sec: 1319.89
//
Query:       MMETSP1137-20121227|2059_1  [L=434]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (434 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        45  (0.0109703); expected 82.0 (0.02)
Passed bias filter:                       42  (0.0102389); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.16s 00:00:00.44 Elapsed: 00:00:00.70
# Mc/sec: 818.33
//
Query:       MMETSP1137-20121227|2061_1  [L=264]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (264 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                         9  (0.00219405); expected 82.0 (0.02)
Passed bias filter:                        8  (0.00195027); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.12s 00:00:00.31 Elapsed: 00:00:00.56
# Mc/sec: 611.32
//
Query:       MMETSP1137-20121227|2062_1  [L=233]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (233 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        49  (0.0119454); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.14s 00:00:00.32 Elapsed: 00:00:00.38
# Mc/sec: 809.30
//
Query:       MMETSP1137-20121227|2063_1  [L=84]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (84 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        31  (0.00755729); expected 82.0 (0.02)
Passed bias filter:                       30  (0.00731351); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.14s 00:00:00.27 Elapsed: 00:00:00.53
# Mc/sec: 209.19
//
Query:       MMETSP1137-20121227|2065_1  [L=229]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (229 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        74  (0.01804); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.15s 00:00:00.36 Elapsed: 00:00:00.28
# Mc/sec: 1042.26
//
Query:       MMETSP1137-20121227|2066_1  [L=440]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.6e-11   41.3   0.2    6.9e-11   40.4   0.1    1.4  1  TIGR00347 bioD: dethiobiotin synthase
    0.00016   18.5   1.1      0.023   11.4   0.0    2.2  2  TIGR00379 cobB: cobyrinic acid a,c-diamide synthase
    0.00064   16.8   0.3     0.0034   14.4   0.1    2.0  2  TIGR01969 minD_arch: cell division ATPase MinD
  ------ inclusion threshold ------
       0.01   12.5   0.7      0.016   11.8   0.1    1.5  2  TIGR00313 cobQ: cobyric acid synthase CobQ


Domain annotation for each model (and alignments):
>> TIGR00347  bioD: dethiobiotin synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.4   0.1   6.7e-14   6.9e-11       1     161 [.      21     198 ..      21     202 .. 0.82

  Alignments for each domain:
  == domain 1    score: 40.4 bits;  conditional E-value: 6.7e-14
   TIGR00347   1 fvtGtDTevGKtvvssalakklkkagysvallKpvqtgiekta..........eDaetlknlkat.eedldevtpyafkePlsPllaakeEgrkidleelekklkeleekedfllvEgaGglavPlteeltvadlikllqlevilVarvkLGt......inhtlltvealrqkglkla 161
                 fv+ t   vGKt vs al++ l+k+  +v+++Kpv     ++           +D e++k+ ++  + ++ ++ p+ +    +   +  e + + ++e +    ++++ + d+ll+Eg G + v    e+  a ++ l+  +v+lVa+ ++G+      +nh+++ ++ +r +g+ l 
  MMETSP1137-20121227|2066_1  21 FVAATRQHVGKTTVSLALMAGLQKRFNKVGYIKPVGQQHVEVIgsdgaavrvdKDVELVKEYFKLdHVSWPDMSPVLMPRSYTKRYIDGEIQLESQVEAILGAQQRVSAASDVLLLEGTGHVGVGSVVEMNNAKVASLMGADVVLVANGGIGSsfdeleMNHSMVLAAGARVRGVVLN 198
                 8999999****************************6655444467788899999999999866551568999999999888888777777677778899999999***********************************************85444445666666555555555554 PP

>> TIGR00379  cobB: cobyrinic acid a,c-diamide synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.4   0.0   2.3e-05     0.023       4      34 ..      22      52 ..      20      63 .. 0.83
   2 !    5.8   0.1    0.0011       1.2      58     154 ..     108     204 ..     100     223 .. 0.73

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 2.3e-05
   TIGR00379  4 iaGtssevGktvislgllkalskrklevqsf 34
                +a t+ +vGkt++sl+l++ l kr  +v   
  MMETSP1137-20121227|2066_1 22 VAATRQHVGKTTVSLALMAGLQKRFNKVGYI 52
                799*********************8776544 PP

  == domain 2    score: 5.8 bits;  conditional E-value: 0.0011
   TIGR00379  58 dsfllseaqikelf...trhskgadvsiieGvrGlydgisaisdkgstasvaklldaPvvlvvnakrlsrsaaaivkGyrsfdpevklkGvilnrvkser 154
                 d  +  e+q++ ++   +r s  +dv ++eG    + g+ ++ ++   a+va l+ a vvlv+n    s      ++  + +  + +++Gv+ln+v  ++
  MMETSP1137-20121227|2066_1 108 DGEIQLESQVEAILgaqQRVSAASDVLLLEGTG--HVGVGSVVEMN-NAKVASLMGADVVLVANGGIGSSFDELEMNHSMVLAAGARVRGVVLNKVIPDK 204
                 555555555554441115666667899999964..45888888875.69***************98766666666777889999***********98765 PP

>> TIGR01969  minD_arch: cell division ATPase MinD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.0     0.076        78       5      31 ..      22      48 ..      18      53 .. 0.78
   2 !   14.4   0.1   3.4e-06    0.0034     125     188 ..     154     218 ..     110     247 .. 0.79

  Alignments for each domain:
  == domain 1    score: 0.1 bits;  conditional E-value: 0.076
   TIGR01969  5 iasGkGGtGkttvtanlgvaLaklGkk 31
                +a+ +  +Gkttv+  l   L k  +k
  MMETSP1137-20121227|2066_1 22 VAATRQHVGKTTVSLALMAGLQKRFNK 48
                67788889******9999888775555 PP

  == domain 2    score: 14.4 bits;  conditional E-value: 3.4e-06
   TIGR01969 125 vtalaaadelllvvnPeissitDalkvkiv.aeklgtkilGvvlnrvtkektelskeeieailev 188
                  +a +++ +++lv n  i s  D l ++ + +  +g ++ Gvvln+v  +k e+ +e   ++l  
  MMETSP1137-20121227|2066_1 154 KVASLMGADVVLVANGGIGSSFDELEMNHSmVLAAGARVRGVVLNKVIPDKVEMVREYFGKLLSQ 218
                 33445677899***************987515689**********************99999875 PP

>> TIGR00313  cobQ: cobyric acid synthase CobQ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0      0.36   3.7e+02       2      33 ..      21      52 ..      20      59 .. 0.84
   2 ?   11.8   0.1   1.6e-05     0.016     106     195 ..     114     200 ..      98     219 .. 0.81

  Alignments for each domain:
  == domain 1    score: -2.5 bits;  conditional E-value: 0.36
   TIGR00313  2 mvvGtsssaGkslltaalcrilarrGykvaPf 33
                 v  t  + Gk++++ al   l++r +kv   
  MMETSP1137-20121227|2066_1 21 FVAATRQHVGKTTVSLALMAGLQKRFNKVGYI 52
                6889999******9999999999998888655 PP

  == domain 2    score: 11.8 bits;  conditional E-value: 1.6e-05
   TIGR00313 106 dlllkaikesleilaeeydlvvieGaGspaeinlkerdlanlriaelveadvilvadidrGGvfasivGtlklleeeerklikGivinkf 195
                 +  ++ai  + + ++   d++++eG+G +    +   ++ n ++a+l+ adv+lva+   G  f ++     ++      +++G+v+nk+
  MMETSP1137-20121227|2066_1 114 ESQVEAILGAQQRVSAASDVLLLEGTGHVGVGSVV--EMNNAKVASLMGADVVLVANGGIGSSFDELEMNHSMVL-AAGARVRGVVLNKV 200
                 566778888888999999********998877776..589*************************9987665543.3456799*****96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (440 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       131  (0.0319356); expected 82.0 (0.02)
Passed bias filter:                      102  (0.0248659); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.35u 0.18s 00:00:00.53 Elapsed: 00:00:00.49
# Mc/sec: 1185.21
//
Query:       MMETSP1137-20121227|2067_1  [L=427]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (427 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        85  (0.0207216); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.15s 00:00:00.43 Elapsed: 00:00:00.42
# Mc/sec: 1341.89
//
Query:       MMETSP1137-20121227|2068_1  [L=482]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (482 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       116  (0.0282789); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.16s 00:00:00.51 Elapsed: 00:00:00.33
# Mc/sec: 1927.84
//
Query:       MMETSP1137-20121227|2069_1  [L=193]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (193 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       116  (0.0282789); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.13s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 878.41
//
Query:       MMETSP1137-20121227|2070_1  [L=240]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (240 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       128  (0.0312043); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.15s 00:00:00.37 Elapsed: 00:00:00.31
# Mc/sec: 1021.85
//
Query:       MMETSP1137-20121227|2072_1  [L=407]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.6e-10   37.3   0.0    1.8e-10   37.1   0.0    1.0  1  TIGR03903 TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein


Domain annotation for each model (and alignments):
>> TIGR03903  TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.1   0.0   4.5e-14   1.8e-10       2     186 ..     132     312 ..     131     362 .. 0.87

  Alignments for each domain:
  == domain 1    score: 37.1 bits;  conditional E-value: 4.5e-14
   TIGR03903   2 tghkvaikllRedaaeeerlvaRFrReialCarLshPnivaLlDsGeaedgllFavFeyveGrtlrevLaadGa..LpaaetgrLmlqvLDalaaahda....GvvhRDLkPqnimvsaadveshakvLDFGigaLlpgvedadeatltrttevlGsPaYaaPeqLRgepvtaksDlYaWGLivleCLtGk 186
                 tg+  a+k+l  +a+ ++  ++    e+    + +  ++v   D   +e   +    ey++G  l   L+  G    p    + +m q++ +l+  h++      + RD  P    ++ a  ++     DFGi+  l g+++       +++ + G+ aY +Pe + ge     sD+++ GLi leC tG 
  MMETSP1137-20121227|2072_1 132 TGKLLAVKVLFAQAVSDKESRQMVLNEVRTVFQARSDHLVSFHDAFLSEG-NMHLCLEYMDGGSLESQLKRTGNrgFPEPILSSIMFQMVQGLTYLHKEkhavRATSRDPTPCRHALAIALFSPPP--TDFGISKQLDGTQA-------LAGTYCGTAAYMSPERVQGEQYSYPSDIWSLGLIALECATGS 312
                 78889*************************************99987765.88999**************99973356666789*********998865221145789999988888888887766..5**********999.......77889************************************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (407 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        73  (0.0177962); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.32u 0.16s 00:00:00.48 Elapsed: 00:00:00.28
# Mc/sec: 1852.40
//
Query:       MMETSP1137-20121227|2074_1  [L=380]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (380 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        88  (0.0214529); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.15s 00:00:00.47 Elapsed: 00:00:00.35
# Mc/sec: 1433.02
//
Query:       MMETSP1137-20121227|2075_1  [L=574]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (574 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        71  (0.0173086); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.15s 00:00:00.51 Elapsed: 00:00:00.54
# Mc/sec: 1403.00
//
Query:       MMETSP1137-20121227|2076_1  [L=259]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (259 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        73  (0.0177962); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.13s 00:00:00.35 Elapsed: 00:00:00.34
# Mc/sec: 1005.45
//
Query:       MMETSP1137-20121227|2077_1  [L=401]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (401 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        94  (0.0229157); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.15s 00:00:00.43 Elapsed: 00:00:00.37
# Mc/sec: 1430.48
//
Query:       MMETSP1137-20121227|2078_1  [L=236]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.4e-17   59.1   0.0    1.2e-16   58.7   0.0    1.1  1  TIGR00231 small_GTP: small GTP-binding protein domain
    2.9e-05   21.1   0.0    4.4e-05   20.5   0.0    1.2  1  TIGR03594 GTPase_EngA: ribosome-associated GTPase EngA
    0.00038   17.7   0.0    0.00059   17.1   0.0    1.3  1  TIGR03596 GTPase_YlqF: ribosome biogenesis GTP-binding protein YlqF
      0.003   14.6   0.0      0.032   11.2   0.0    1.9  2  TIGR03597 GTPase_YqeH: ribosome biogenesis GTPase YqeH
  ------ inclusion threshold ------
      0.013   12.7   0.0      0.017   12.3   0.0    1.2  1  TIGR00436 era: GTP-binding protein Era
      0.025   11.3   0.0      0.046   10.4   0.0    1.4  1  TIGR03156 GTP_HflX: GTP-binding protein HflX
      0.039   11.5   0.0      0.065   10.8   0.0    1.5  1  TIGR03598 GTPase_YsxC: ribosome biogenesis GTP-binding protein YsxC
      0.075    9.0   0.6        0.1    8.5   0.4    1.1  1  TIGR00929 VirB4_CagE: type IV secretion/conjugal transfer ATPase, VirB4 family


Domain annotation for each model (and alignments):
>> TIGR00231  small_GTP: small GTP-binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.7   0.0   2.4e-19   1.2e-16       2     131 ..      66     188 ..      65     192 .. 0.89

  Alignments for each domain:
  == domain 1    score: 58.7 bits;  conditional E-value: 2.4e-19
   TIGR00231   2 keikivivGhvdvGKstLlnsllknkisiteskpgvtrdyvteqieedGktykvnllDTaGqedfdairrlyvreverslevvdivilvldveeglekqtkeiiheakkkgvpiilvvnKiDlkddlktk 131
                 k+ +++++G +++GKstLl  llknk++++e     t + vt+ i++ +   k+  +D +G++  ++++r+y +e++++++    + + ++++e+  +  k i+     + +p+++ +nK+Dl +++ ++
  MMETSP1137-20121227|2078_1  66 KKGQLLVIGLDNAGKSTLLTMLLKNKVVPHEP----THQPVTDEIKVGS--LKLRAVDMGGHAIARRMWRQYSQEADAVASSSXAADR-ERFQEAALELHKLIAGNSLPAHAPVLVLGNKVDLPQAVREE 188
                 677899*************************9....66777777*****..89***********************************.****9987777776665555**************9966654 PP

>> TIGR03594  GTPase_EngA: ribosome-associated GTPase EngA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   0.0   8.6e-08   4.4e-05       4     138 ..      71     199 ..      68     204 .. 0.73

  Alignments for each domain:
  == domain 1    score: 20.5 bits;  conditional E-value: 8.6e-08
   TIGR03594   4 aivGrpNVGKStLfNrlvkkrkAivedtpgvTRDrkygeaelkgkefiliDTgGleeeedelekeireqael...aieeadvilfvvdareglteeDeeiaklLrkskkpvilvvNKvdnkkeeaeaaefyslGlgev 138
                  ++G  N GKStL+  l+k++  +v  +p  T    ++e+++ + +++ +D gG   +     +++ +q ++   a+++++        +e   e ++ ia     ++ pv+++ NKvd  ++  e + ++slGl+ +
  MMETSP1137-20121227|2078_1  71 LVIGLDNAGKSTLLTMLLKNK--VVPHEP--THQPVTDEIKVGSLKLRAVDMGGHAIA-----RRMWRQYSQeadAVASSSXAADRERFQEAALELHKLIAGNSLPAHAPVLVLGNKVDLPQAVREEELYWSLGLDAL 199
                 689***************988..788777..899999*****************9444.....44444444300033333333333333444445555555555566699***********999999999****9876 PP

>> TIGR03596  GTPase_YlqF: ribosome biogenesis GTP-binding protein YlqF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.0   1.1e-06   0.00059     113     145 ..      62      94 ..      55     120 .. 0.87

  Alignments for each domain:
  == domain 1    score: 17.1 bits;  conditional E-value: 1.1e-06
   TIGR03596 113 glkkkairalvvGiPNvGKStliNrlakkkvak 145
                 g+ +k+ ++lv+G+ N GKStl+  l+k+kv+ 
  MMETSP1137-20121227|2078_1  62 GIFTKKGQLLVIGLDNAGKSTLLTMLLKNKVVP 94 
                 78889999*********************9975 PP

>> TIGR03597  GTPase_YqeH: ribosome biogenesis GTPase YqeH
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.2   0.0   6.3e-05     0.032     151     179 ..      63      91 ..      51     109 .. 0.86
   2 ?    1.2   0.0     0.071        36      91     113 ..     169     190 ..     158     199 .. 0.84

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 6.3e-05
   TIGR03597 151 karekkdvyvvGvtNVGKSsliNkllkln 179
                  +++k + +v+G  N GKS+l+  llk++
  MMETSP1137-20121227|2078_1  63 IFTKKGQLLVIGLDNAGKSTLLTMLLKNK 91 
                 56778899****************99876 PP

  == domain 2    score: 1.2 bits;  conditional E-value: 0.071
   TIGR03597  91 enkvllvvNKidllpksvkleki 113
                 + +vl+++NK+d lp++v++e++
  MMETSP1137-20121227|2078_1 169 HAPVLVLGNKVD-LPQAVREEEL 190
                 5789********.5999888876 PP

>> TIGR00436  era: GTP-binding protein Era
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   3.3e-05     0.017       4      26 ..      71      93 ..      68     112 .. 0.82

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 3.3e-05
   TIGR00436  4 ailGrpnvGKSTLlNkllgqkis 26
                 ++G  n+GKSTLl  ll++k+ 
  MMETSP1137-20121227|2078_1 71 LVIGLDNAGKSTLLTMLLKNKVV 93
                59*****************9976 PP

>> TIGR03156  GTP_HflX: GTP-binding protein HflX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0     9e-05     0.046     192     215 ..      70      93 ..      65     106 .. 0.88

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 9e-05
   TIGR03156 192 valvGYTNaGKstllnaltkaevl 215
                 + ++G  NaGKstll +l k++v+
  MMETSP1137-20121227|2078_1  70 LLVIGLDNAGKSTLLTMLLKNKVV 93 
                 5689***************99987 PP

>> TIGR03598  GTPase_YsxC: ribosome biogenesis GTP-binding protein YsxC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00013     0.065      20      77 ..      69     124 ..      62     181 .. 0.79

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 0.00013
   TIGR03598  20 eiafaGrSNvGKSsliNaLtnrkklartSktPGrTqlinffevneelrlvDlPGYGya 77 
                 ++ ++G  N+GKS+l+ +L+++k + +  ++   T +i + ++  +lr vD+ G+  a
  MMETSP1137-20121227|2078_1  69 QLLVIGLDNAGKSTLLTMLLKNKVVPHEPTHQPVTDEIKVGSL--KLRAVDMGGHAIA 124
                 66789*****************966554444344555544443..4666676666555 PP

>> TIGR00929  VirB4_CagE: type IV secretion/conjugal transfer ATPase, VirB4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   0.4    0.0002       0.1     437     459 ..      67      89 ..      59      91 .. 0.90

  Alignments for each domain:
  == domain 1    score: 8.5 bits;  conditional E-value: 0.0002
   TIGR00929 437 lGhTlIfGptgsGKTvllnflla 459
                 +G  l++G  ++GK++ll++ll 
  MMETSP1137-20121227|2078_1  67 KGQLLVIGLDNAGKSTLLTMLLK 89 
                 7999*****************85 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (236 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       161  (0.0392491); expected 82.0 (0.02)
Passed bias filter:                      157  (0.038274); expected 82.0 (0.02)
Passed Vit filter:                        45  (0.0109703); expected 4.1 (0.001)
Passed Fwd filter:                         8  (0.00195027); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.28u 0.16s 00:00:00.44 Elapsed: 00:00:00.64
# Mc/sec: 486.71
//
Query:       MMETSP1137-20121227|2079_1  [L=750]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0027   14.6   0.0     0.0045   13.9   0.0    1.3  1  TIGR04095 dnd_restrict_1: DNA phosphorothioation system restriction enzyme


Domain annotation for each model (and alignments):
>> TIGR04095  dnd_restrict_1: DNA phosphorothioation system restriction enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.0   1.1e-06    0.0045      27     170 ..     460     597 ..     429     607 .. 0.77

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 1.1e-06
   TIGR04095  27 GilkmatGtGktltaLalvsklaekikslvvvvvvPykhLveqWakeaekFglepilayesvsrWqkelsekleelsskakkllliittnatlkeekFqsqlrllkkkllliaDeahnlGakr..lkealpdsiklRLgLsatPeR 170
                 G+l+   G Gkt+  L++v+       s  +++v+P k L   W++ea++F  +       v+ W+ + ++ l+e+  ka+    ++ tn     +k    l +  +   ++ De h +   +  + +a    ++ R +Ls tP +
  MMETSP1137-20121227|2079_1 460 GVLADEMGLGKTVQCLSVVALDVAAGASKPTLIVCP-KALFATWQNEAQRFHRRF-----RVRVWHGSKKTVLKEMIRKAQGSSDVLLTNYDSLRDKLELLLGVEWR--RVVLDESHAINNSQngFDAACKLIADSRWSLSGTPIK 597
                 688888999*********9999999999********.8899**********8653.....56789999999999998888888888888888777777766665444..4677999988765511345555566788888888865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (750 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       158  (0.0385178); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.15s 00:00:00.60 Elapsed: 00:00:00.43
# Mc/sec: 2302.14
//
Query:       MMETSP1137-20121227|2080_1  [L=111]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (111 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        62  (0.0151146); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.15s 00:00:00.30 Elapsed: 00:00:00.27
# Mc/sec: 542.62
//
Query:       MMETSP1137-20121227|2081_1  [L=293]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (293 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       113  (0.0275475); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.15s 00:00:00.37 Elapsed: 00:00:00.37
# Mc/sec: 1045.21
//
Query:       MMETSP1137-20121227|2082_1  [L=655]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      5e-41  138.5  26.2    5.1e-26   89.0   8.2    3.0  3  TIGR00840 b_cpa1: sodium/hydrogen exchanger 3
      4e-13   46.5  17.5    2.4e-07   27.5   6.0    2.5  2  TIGR00831 a_cpa1: Na+/H+ antiporter
  ------ inclusion threshold ------
      0.033   12.2   0.0      0.067   11.2   0.0    1.4  1  TIGR03455 HisG_C-term: ATP phosphoribosyltransferase, C-terminal domain


Domain annotation for each model (and alignments):
>> TIGR00840  b_cpa1: sodium/hydrogen exchanger 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.7   3.0   1.5e-17   2.1e-14       5     125 ..      94     217 ..      90     230 .. 0.79
   2 !   89.0   8.2   3.8e-29   5.1e-26     164     376 ..     224     440 ..     219     447 .. 0.87
   3 !    6.6   0.0   0.00034      0.47     390     426 ..     474     510 ..     464     629 .. 0.67

  Alignments for each domain:
  == domain 1    score: 50.7 bits;  conditional E-value: 1.5e-17
   TIGR00840   5 vqkpllivllillvslakisfhltqkvlrvvpEsvllivvGllvgg..iikaaer.kdpvtldsslfFlvLLPpivldaGyflpkreFfenlgsiLlfAvvGtlinAlvlglslYgillilgle 125
                 + k+  +v +  l + + i+f l  + +  +pE+ + +++Gl  ++   + + e+  ++  +d ++f   LLPpi+ +aG++++   Ff+n g  ++fA vGt+ + +++g +++   ++++  
  MMETSP1137-20121227|2082_1  94 MTKWSYVVGITALFATLSIGFILESNHIYWLPEAGVGVLMGLFCALgaKLAGNEHmLSSERFDFEFFMTWLLPPIIFEAGFNMNVAAFFDNAGPTVFFAFVGTFASTFIVGGLVFYAGQLGLCY 217
                 556666666666777789***********************98655105555556678999*************************************************98877555555544 PP

  == domain 2    score: 89.0 bits;  conditional E-value: 3.8e-29
   TIGR00840 164 iliFGEsLlNDavtvvlyevlekfvkladeavtivdvvegivsffvvalggllvGvvvgflvalilkft..khir...viepllvllisYlsYllaetlhlSgilalilcgivlkkYveaNiseksettikyflkllsslsEtliFiflGvslvse..neewnwafvvltlvfcviyRvlgvvtlsailnkfr.....kvkleikdqlvifyaGlRGAvafaLal 376
                  l FG     Dav++vl ++l +f      +v    ++ +++sf+ + +g++++G+v g+l+al+ k++  kh++     e+ l + +++ +Y++ae l+lSgi+++++cgiv+    ++ +  k   +     k ++ ++Et +F++lG+ +v+    e   w+++v +l+ c + R+  +   s+i n fr     +  ++ ++ +v+ ++G    vafaLa 
  MMETSP1137-20121227|2082_1 224 ALTFGSVGADDAVAIVLSNTLVSFLY---VPVSQEAIIGAVLSFLQIFIGSMVIGIVAGMLSALVFKHMglKHHEeivFLEAALSFPFPWAAYFIAEALKLSGIVTILFCGIVMAXVHAEQLLDKVGDA--HGGKCIALVAETYVFVYLGMAMVTFpiFESTVWLLMVYALLACFVGRL-HIYIGSWIFNCFRsteshPPAITPQYMFVMWFSGX--GVAFALAS 440
                 688999999***************99...89999999*******************************85444445557799**********************************9999999886655..678******************998622466778**************6.67888********87766667999**********7..47777765 PP

  == domain 3    score: 6.6 bits;  conditional E-value: 0.00034
   TIGR00840 390 vttvlvvvfltvilqGltikplvevLkvkkkekskek 426
                 +  ++ + ++t++++G  i  + ++ +v  k+k+ +k
  MMETSP1137-20121227|2082_1 474 MQVTMLIAVFTIFIFGGSITRVCQICDVIDKTKKIRK 510
                 567888999***************9998555443222 PP

>> TIGR00831  a_cpa1: Na+/H+ antiporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.4   2.1   3.1e-09   4.2e-06      17     124 ..     119     238 ..     100     246 .. 0.72
   2 !   27.5   6.0   1.8e-10   2.4e-07     170     283 ..     256     371 ..     232     400 .. 0.73

  Alignments for each domain:
  == domain 1    score: 23.4 bits;  conditional E-value: 3.1e-09
   TIGR00831  17 vkrfrvplpvllilaGallglat.......llleveldrevvlllFlPplLfaeamntdlrelrenlreivllalalvvvtvvavgfllrw..vlGipla....aalvlgavlsptDavav 124
                  + + +p + + +l+G++ +l +       +l   ++d e ++   lPp++f++++n+++  +  n ++ v +a+ +  + +  vg l+ +   lG+  a    aal +g  + + Dava+
  MMETSP1137-20121227|2082_1 119 NHIYWLPEAGVGVLMGLFCALGAklagnehMLSSERFDFEFFMTWLLPPIIFEAGFNMNVAAFFDNAGPTVFFAFVGTFASTFIVGGLVFYagQLGLCYAldglAALTFGS-VGADDAVAI 238
                 466777777777888887776541111111445567999*******************************************99998888745577644322216777776.478899987 PP

  == domain 2    score: 27.5 bits;  conditional E-value: 1.8e-10
   TIGR00831 170 dpaaavveFvvvavGGilaGlvvgyLvtr.....llrakiDepleeialllllpfaafllaerlkvsGvvavvaaglvltrvGvtrsisaasRlralsfWavleFlvngivfvlvGvql 283
                    +av+ F+++ +G +++G+v g+L         l+++ +    e al++  p+aa+ +ae lk+sG+v ++  g+v++ v  +   ++  ++      + +  +  + vfv++G+ +
  MMETSP1137-20121227|2082_1 256 AIIGAVLSFLQIFIGSMVIGIVAGMLSALvfkhmGLKHHEEIVFLEAALSFPFPWAAYFIAEALKLSGIVTILFCGIVMAXVHAE---QLLDKVGDAHGGKCIALVAETYVFVYLGMAM 371
                 3467889999999998888888888877622232122333334568899*******************************99887...6667777777778888888888888888764 PP

>> TIGR03455  HisG_C-term: ATP phosphoribosyltransferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   4.9e-05     0.067      19      62 ..     590     632 ..     576     644 .. 0.85

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 4.9e-05
   TIGR03455  19 rlegvlearkkvllklnvpkdsLdeilavlPglegPTvsklade 62 
                  ++ v++ +++ + ++  + d+Lde+++vlPg+++ T  kl de
  MMETSP1137-20121227|2082_1 590 GMQMVMQGNGTTVAEMSLH-DKLDELRSVLPGASSSTLRKLLDE 632
                 5788888999999999886.78******************9866 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (655 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       296  (0.0721599); expected 82.0 (0.02)
Passed bias filter:                      136  (0.0331546); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.57u 0.17s 00:00:00.74 Elapsed: 00:00:00.62
# Mc/sec: 1394.40
//
Query:       MMETSP1137-20121227|2083_1  [L=269]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (269 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        57  (0.0138957); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.15s 00:00:00.37 Elapsed: 00:00:00.32
# Mc/sec: 1109.53
//
Query:       MMETSP1137-20121227|2084_1  [L=376]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        1.1    6.2  15.7       0.23    8.5   5.4    2.1  2  TIGR03025 EPS_sugtrans: exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase


Domain annotation for each model (and alignments):
>> TIGR03025  EPS_sugtrans: exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   1.8    0.0035        14      41     111 ..     156     225 ..     114     235 .. 0.51
   2 ?    8.5   5.4   5.5e-05      0.23      14     111 ..     230     328 ..     219     346 .. 0.76

  Alignments for each domain:
  == domain 1    score: 2.5 bits;  conditional E-value: 0.0035
   TIGR03025  41 lilfala.glyrskrrrslleelarvllalllllllllalafllkslslsrlvlllalllalllllllrlll 111
                 ++l+ +a +  + +  ++ +e+  + + +   +++++l+l+++++  + +r+   +++++ l++ l+  l +
  MMETSP1137-20121227|2084_1 156 VLLVHFApEEKQLTSVEEIWEHASQPVFVAYSIVVVMLSLLLMYR--YAPRYGKSMVWVYVLICSLVGSLSV 225
                 333333323333444444444444444444444444455555555..6666666666666666555555444 PP

  == domain 2    score: 8.5 bits;  conditional E-value: 5.5e-05
   TIGR03025  14 a.llllslkllleeeesslllllllllllilfalaglyrskrrrslleelarvllalllllllllalafllkslslsrlvlllalllalllllllrlll 111
                 a  + ++l+l   ++ ++  ++ll+l++l+ +a +  y +k   ++ +++++ + +++++l++++a ++++k+ + +    + + ++all+l+l   +l
  MMETSP1137-20121227|2084_1 230 AlGIAIKLTLRGSWQIHKKETYLLVLWVLLXIATQMNYLNKALDTFNTTMVSSVYYVFFTLCTVTASMIMYKDWENQTANTIGWQMIALLVLVLGVHVL 328
                 13355667777777777777888888888888888788889*******************************777777777777777777777665544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (376 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       212  (0.0516821); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.30u 0.17s 00:00:00.47 Elapsed: 00:00:00.53
# Mc/sec: 936.38
//
Query:       MMETSP1137-20121227|2085_1  [L=333]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.3e-76  254.6   7.5    3.1e-76  254.2   5.2    1.1  1  TIGR01853 lipid_A_lpxD: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
    7.1e-20   69.2  11.6    2.3e-18   64.2   8.1    2.4  1  TIGR01852 lipid_A_lpxA: acyl-[acyl-carrier-protein]-UDP-N-acetylglucosamine O-acyltransferase
    2.8e-19   67.3  14.2    1.9e-12   45.0   3.6    2.4  2  TIGR03570 NeuD_NnaD: sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family
    2.4e-08   31.5   2.8    0.00087   16.5   0.1    2.1  2  TIGR03991 alt_bact_glmU: UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase
    9.7e-08   29.7  12.2     0.0012   16.3   4.0    2.5  2  TIGR03532 DapD_Ac: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase
    3.2e-07   27.3   4.6       0.01   12.5   0.1    3.4  2  TIGR01173 glmU: UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase
    1.2e-05   22.2   2.5      0.029   11.1   0.1    2.4  2  TIGR03992 Arch_glmU: UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase
    9.8e-05   19.4   0.6      0.012   12.5   0.0    2.1  2  TIGR02091 glgC: glucose-1-phosphate adenylyltransferase
    0.00016   19.5  18.1     0.0037   15.2   2.2    4.2  5  TIGR01172 cysE: serine O-acetyltransferase
    0.00049   16.9   0.7      0.016   11.9   0.1    2.1  2  TIGR01208 rmlA_long: glucose-1-phosphate thymidylyltransferase
     0.0011   15.2   9.2      0.048    9.8   0.5    3.1  3  TIGR02353 NRPS_term_dom: non-ribosomal peptide synthetase terminal domain of unknown function
      0.007   13.9  15.0      0.011   13.3   2.1    3.1  2  TIGR02287 PaaY: phenylacetic acid degradation protein PaaY
  ------ inclusion threshold ------
      0.038   11.7   3.8        0.5    8.1   0.1    2.5  2  TIGR04008 WcaF: colanic acid biosynthesis acetyltransferase WcaF
       0.11   10.2   8.2        1.4    6.5   0.1    3.8  4  TIGR03308 phn_thr-fam: phosphonate metabolim protein, transferase hexapeptide repeat family
       0.11    9.8   9.4       0.86    6.8   1.0    2.4  2  TIGR00965 dapD: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase


Domain annotation for each model (and alignments):
>> TIGR01853  lipid_A_lpxD: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  254.2   5.2   1.1e-78   3.1e-76      96     320 ..      50     273 ..      37     277 .. 0.96

  Alignments for each domain:
  == domain 1    score: 254.2 bits;  conditional E-value: 1.1e-78
   TIGR01853  96 lptavveesakleeeveigpnvviganveiGenvkIgpgvvigddvkigdesviyanvviyeevklgknviiqagaviGsdGFGyaltangehvkipqiGrViieddveiGAnttiDRgalddtvikegtkiDNlvqiaHnvkiGentiivaqvgiaGStkiGrnvilgGqvgvagHleigdkvvigaksgvsksveenkkyggiParelkewlkeaaklkrlae 320
                  +t  +++sa++++++++ p +v+ a++ iG++ ++  g+v+g +vk+g++++i a+v++  ++ +g+ +i+++g+++G+dGFG+    +g +vk pq+ rV i+d ve+GA+++iDRg   dtvi+++tk+DN+vqi+Hnv+iG+n++++a++g+aGS+ +G++++lgG++gva+H++++++v ++a+sgv+ks+ +++ ygg+Pa+++ +w++++a  +r a 
  MMETSP1137-20121227|2085_1  50 CNTSNIHPSAHVHPSAQLSPTAVVRAHAFIGARAIVSDGAVVGTKVKVGANTRIGAGVTLE-NCLVGDDCILHSGVRVGADGFGFYVDTDGMMVKKPQLLRVRIGDGVEVGAGSCIDRGSWRDTVIGDNTKLDNMVQIGHNVQIGRNCMLCAHTGMAGSSSLGDYCVLGGKSGVADHVSLTNHVRVAAMSGVTKSISHPGDYGGMPAQPIAQWRRQVASARRAAA 273
                 568899*****************************************************98.***********************99999********************************************************************************************************************************9988765 PP

>> TIGR01852  lipid_A_lpxA: acyl-[acyl-carrier-protein]-UDP-N-acetylglucosamine O-acyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.2   8.1   8.6e-21   2.3e-18       2     174 ..      68     244 ..      55     259 .. 0.84

  Alignments for each domain:
  == domain 1    score: 64.2 bits;  conditional E-value: 8.6e-21
   TIGR01852   2 hptaiieegaelgedveigpfavvgkevkigegvelkshvviegattiGentkvfpgAviGeep.......Qdlky.kgekteleiGdnntirEfvtinrgtkegkgvtsiGdnnlllaysHvaHdcvvgnnvvlannatlaGhvevgdlaiigglvavHQfvrigeyamigglsavskDv 174
                 +pta++  +a +g+   +   avvg++vk+g+++++ + v++e +  +G+++ +++g  +G +          +   k +  +++iGd +++     i+rg+ ++   t+iGdn+ l  ++ ++H++++g n++l  ++ +aG  ++gd++++gg ++v  +v +++++ ++++s+v+k +
  MMETSP1137-20121227|2085_1  68 SPTAVVRAHAFIGARAIVSDGAVVGTKVKVGANTRIGAGVTLE-NCLVGDDCILHSGVRVGADGfgfyvdtDGMMVkKPQLLRVRIGDGVEVGAGSCIDRGSWRD---TVIGDNTKLDNMVQIGHNVQIGRNCMLCAHTGMAGSSSLGDYCVLGGKSGVADHVSLTNHVRVAAMSGVTKSI 244
                 5788888888888888888888888888888888888888886.4678999999999999987511111112222313333699******************999...*********************************************************************9977 PP

>> TIGR03570  NeuD_NnaD: sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.2   1.1     2e-09   5.5e-07      88     166 ..      53     124 ..      37     130 .. 0.53
   2 !   45.0   3.6   7.1e-15   1.9e-12     100     202 .]     150     256 ..     147     256 .. 0.94

  Alignments for each domain:
  == domain 1    score: 27.2 bits;  conditional E-value: 2e-09
   TIGR03570  88 tlihpsaivsksasiGeGvvimagavinadvrigdnviintgavveHdceigdfvhiapgatlsGgvkigegvfiGagA 166
                 + ihpsa v +sa++       + av+ a + ig+  i+  gavv+  +++g+++ i +g+tl  ++ +g+++++++g 
  MMETSP1137-20121227|2085_1  53 SNIHPSAHVHPSAQLS------PTAVVRAHAFIGARAIVSDGAVVGTKVKVGANTRIGAGVTLE-NCLVGDDCILHSGV 124
                 3345555555555544......555555555555555555555555555555555555555554.45555555555443 PP

  == domain 2    score: 45.0 bits;  conditional E-value: 7.1e-15
   TIGR03570 100 asiGeGvvimagavina....dvrigdnviintgavveHdceigdfvhiapgatlsGgvkigegvfiGagAtviqgvtIgkgavvGaGavVvkdipenavvvGvPak 202
                 ++iG+Gv + ag++i      d+ igdn+ + + + ++H+++ig ++ ++++  ++G  ++g+ +++G ++ v ++v++ +++ v a + V+k+i+  + + G+Pa+
  MMETSP1137-20121227|2085_1 150 VRIGDGVEVGAGSCIDRgswrDTVIGDNTKLDNMVQIGHNVQIGRNCMLCAHTGMAGSSSLGDYCVLGGKSGVADHVSLTNHVRVAAMSGVTKSISHPGDYGGMPAQ 256
                 789************962233689*********************************************************************************96 PP

>> TIGR03991  alt_bact_glmU: UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.1   7.6e-06    0.0021     205     250 ..      62     107 ..      57     117 .. 0.87
   2 !   16.5   0.1   3.2e-06   0.00087     180     248 ..     149     218 ..     133     226 .. 0.87

  Alignments for each domain:
  == domain 1    score: 15.3 bits;  conditional E-value: 7.6e-06
   TIGR03991 205 gkdakveefsflegpvyigegarvkagarikggtsiGttckiGGEv 250
                  + a++++ ++++  ++ig+ a v +ga +  ++ +G++++iG  v
  MMETSP1137-20121227|2085_1  62 HPSAQLSPTAVVRAHAFIGARAIVSDGAVVGTKVKVGANTRIGAGV 107
                 677999*************************************877 PP

  == domain 2    score: 16.5 bits;  conditional E-value: 3.2e-06
   TIGR03991 180 avfieegakvkegavldasd.GpivigkdakveefsflegpvyigegarvkagarikggtsiGttckiGG 248
                  v i+ g++v +g  +d  +    vig+++k+ ++  +  +v ig++++  a+  + g +s+G +c  GG
  MMETSP1137-20121227|2085_1 149 RVRIGDGVEVGAGSCIDRGSwRDTVIGDNTKLDNMVQIGHNVQIGRNCMLCAHTGMAGSSSLGDYCVLGG 218
                 4778999999999999965515799********************************************9 PP

>> TIGR03532  DapD_Ac: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   4.0   4.4e-06    0.0012      85     147 ..      63     124 ..      39     168 .. 0.59
   2 !   16.1   1.8   5.2e-06    0.0014      98     216 ..     149     263 ..     139     275 .. 0.87

  Alignments for each domain:
  == domain 1    score: 16.3 bits;  conditional E-value: 4.4e-06
   TIGR03532  85 inariepGaiirdkvaigdnavimmGaviniGaeiGegtmidmnavlGgraivGknvhiGaGa 147
                   a++ p a++r ++ ig  a++  Gav+    ++G +t i  +++l   + vG ++ + +G 
  MMETSP1137-20121227|2085_1  63 PSAQLSPTAVVRAHAFIGARAIVSDGAVVGTKVKVGANTRIGAGVTLE-NCLVGDDCILHSGV 124
                 467788888888888888888888888888888888888887766653.24444444433332 PP

  == domain 2    score: 16.1 bits;  conditional E-value: 5.2e-06
   TIGR03532  98 kvaigdnavimmGaviniGa....eiGegtmidmnavlGgraivGknvhiGaGavlaGvieppsakpvvieddvliGanavileGvkvGkGavvaaGaiviedvpentvvaGvpakvikevde 216
                 +v igd+  +  G+ i+ G+    +iG++t +d  + +G   ++G+n+ + a + +aG           + d  ++G  + + + v + +   vaa + v++ +++    +G+pa+ i +   
  MMETSP1137-20121227|2085_1 149 RVRIGDGVEVGAGSCIDRGSwrdtVIGDNTKLDNMVQIGHNVQIGRNCMLCAHTGMAGS--------SSLGDYCVLGGKSGVADHVSLTNHVRVAAMSGVTKSISHPGDYGGMPAQPIAQWRR 263
                 5789999999999999988533338*****************************99993........35899*******************************************99887655 PP

>> TIGR01173  glmU: UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.2   0.1   4.5e-05     0.012     258     307 ..      72     121 ..      65     130 .. 0.87
   2 !   12.5   0.1   3.7e-05      0.01     256     315 ..     183     243 ..     173     251 .. 0.74

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 4.5e-05
   TIGR01173 258 llekdveigqdvviepnvilegkvkigedvviGagsvikdsaikenakik 307
                 +++++  ig+  +++ ++++  kvk+g +++iGag++++++ +++++ ++
  MMETSP1137-20121227|2085_1  72 VVRAHAFIGARAIVSDGAVVGTKVKVGANTRIGAGVTLENCLVGDDCILH 121
                 567777889999999******************************99876 PP

  == domain 2    score: 12.5 bits;  conditional E-value: 3.7e-05
   TIGR01173 256 svllekdveigqdvviepnvilegkvkigedvviGagsvikd.saikenakikaysvleks 315
                  v + ++v+ig+++++  ++ + g  ++g+ +v+G +s + d +++ +++ ++a+s + ks
  MMETSP1137-20121227|2085_1 183 MVQIGHNVQIGRNCMLCAHTGMAGSSSLGDYCVLGGKSGVADhVSLTNHVRVAAMSGVTKS 243
                 4667788888888888888888888888888888877766542678888888877776654 PP

>> TIGR03992  Arch_glmU: UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.7   0.1   0.00013     0.037     239     296 ..      55     112 ..      41     130 .. 0.55
   2 !   11.1   0.1   0.00011     0.029     237     303 ..     178     244 ..     148     248 .. 0.88

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 0.00013
   TIGR03992 239 veenvklkgevvveegavvrsgayieGpvligknaeiGPnayiRpatvigedvkvgna 296
                 +++ ++++ +  +   avvr++a+i   +++ ++a++G +  + ++t ig +v++ n+
  MMETSP1137-20121227|2085_1  55 IHPSAHVHPSAQLSPTAVVRAHAFIGARAIVSDGAVVGTKVKVGANTRIGAGVTLENC 112
                 4555555555555555555555555555555555555555555555555444444333 PP

  == domain 2    score: 11.1 bits;  conditional E-value: 0.00011
   TIGR03992 237 geveenvklkgevvveegavvrsgayieGpvligknaeiGPnayiRpatvigedvkvgnaveiKnsi 303
                  ++++ v++  +v ++++ ++ +++ + G   +g+ +++G ++ +  + +++++v+v++++ + +si
  MMETSP1137-20121227|2085_1 178 TKLDNMVQIGHNVQIGRNCMLCAHTGMAGSSSLGDYCVLGGKSGVADHVSLTNHVRVAAMSGVTKSI 244
                 5677889999999999999999999999999999999999999999999999999999999998887 PP

>> TIGR02091  glgC: glucose-1-phosphate adenylyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.5   0.0   4.6e-05     0.012     267     346 ..      47     121 ..      40     129 .. 0.54
   2 !    5.4   0.1    0.0064       1.8     300     361 ..     158     197 ..     135     236 .. 0.67

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 4.6e-05
   TIGR02091 267 dlydkkwpiytkeeqlppakfveskeakvkdslvaegcvisgatvenSvlgervriesesevedsvvlgevkigenakik 346
                 d y ++++i+ +++  p a++         ++ +++ +++s+     +v+g++v++++++++   v l++  +g+++ ++
  MMETSP1137-20121227|2085_1  47 DAYCNTSNIHPSAHVHPSAQLSPT-AVVRAHAFIGARAIVSD----GAVVGTKVKVGANTRIGAGVTLENCLVGDDCILH 121
                 555555555555553333333222.23334455555555555....4567777777777777777777777777766554 PP

  == domain 2    score: 5.4 bits;  conditional E-value: 0.0064
   TIGR02091 300 vaegcvisgatvenSvlgervriesesevedsvvlgevkigenakikkaiidknvrigegvk 361
                 v++g++i+ ++ ++ v+g+++++++ +++ + v +g+                      + +
  MMETSP1137-20121227|2085_1 158 VGAGSCIDRGSWRDTVIGDNTKLDNMVQIGHNVQIGR----------------------NCM 197
                 5667777777777777777777777777766654444......................222 PP

>> TIGR01172  cysE: serine O-acetyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.0      0.24        66     126     138 ..       7      19 ..       3      44 .. 0.85
   2 ?    2.3   1.0      0.12        33      61     100 ..      58      95 ..      19      99 .. 0.55
   3 !    8.4   2.0    0.0016      0.43     111     144 ..      74     107 ..      49     118 .. 0.76
   4 ?    2.9   0.2     0.078        21      86     144 ..     110     162 ..     106     164 .. 0.63
   5 !   15.2   2.2   1.3e-05    0.0037      60     162 .]     148     256 ..     138     256 .. 0.86

  Alignments for each domain:
  == domain 1    score: 1.3 bits;  conditional E-value: 0.24
   TIGR01172 126 akvLGnievgena 138
                  k+LGni+vg+n 
  MMETSP1137-20121227|2085_1   7 EKMLGNIRVGQNE 19 
                 589*******985 PP

  == domain 2    score: 2.3 bits;  conditional E-value: 0.12
   TIGR01172  61 gvdihPaakigrgvli.DhatGvviGetavigddvsiyqgv 100
                 +  +hP+a+++   ++  ha    iG  a++ d   +   v
  MMETSP1137-20121227|2085_1  58 SAHVHPSAQLSPTAVVrAHA---FIGARAIVSDGAVVGTKV 95 
                 55566666665443331343...234444444433333333 PP

  == domain 3    score: 8.4 bits;  conditional E-value: 0.0016
   TIGR01172 111 kRhPtvkegvvigagakvLGnievgenakiGans 144
                   h  ++++++++ ga v  +++vg+n++iGa+ 
  MMETSP1137-20121227|2085_1  74 RAHAFIGARAIVSDGAVVGTKVKVGANTRIGAGV 107
                 4578888888888888888889999999998874 PP

  == domain 4    score: 2.9 bits;  conditional E-value: 0.078
   TIGR01172  86 etavigddvsiyqgvtLGgtgkekgkRhPtvkegvvigagakvLGnievgenakiGans 144
                 e + +gdd+ ++ gv +G+ g         v  + ++    ++L  +++g+++++Ga+s
  MMETSP1137-20121227|2085_1 110 ENCLVGDDCILHSGVRVGADGFGF-----YVDTDGMMVKKPQLL-RVRIGDGVEVGAGS 162
                 678899999999999999877432.....333344444444444.56777777777776 PP

  == domain 5    score: 15.2 bits;  conditional E-value: 1.3e-05
   TIGR01172  60 tgvdihPaakigrgvliDhat..GvviGetavigddvsiyqgvtLGgtgkekg....kRhPtvkegvvigagakvLGnievgenakiGansvvlkdvpaeatvvGvpar 162
                   v i  + ++g+g  iD +     viG+ +++++ v+i ++v +G + + ++         +++  v+g  + v  ++++ +++++ a s v+k +++     G+pa+
  MMETSP1137-20121227|2085_1 148 LRVRIGDGVEVGAGSCIDRGSwrDTVIGDNTKLDNMVQIGHNVQIGRNCMLCAhtgmAGSSSLGDYCVLGGKSGVADHVSLTNHVRVAAMSGVTKSISHPGDYGGMPAQ 256
                 5678888999*********963379*********************9987654211456789***********************************998888888875 PP

>> TIGR01208  rmlA_long: glucose-1-phosphate thymidylyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.9   0.1   5.8e-05     0.016     247     316 ..      51     123 ..      42     158 .. 0.79
   2 ?    4.1   0.0     0.014       3.8     250     299 ..     151     200 ..     134     244 .. 0.70

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 5.8e-05
   TIGR01208 247 ekskieGrvkveegaki.vnsvirGPaviGedviiens.yigpytsigegvvikda.eveksivldesviegv 316
                 ++s+i+   +v+ +a++   +v+r  a iG  +i+ +   +g  + +g +++i  + ++e+++v d++++++ 
  MMETSP1137-20121227|2085_1  51 NTSNIHPSAHVHPSAQLsPTAVVRAHAFIGARAIVSDGaVVGTKVKVGANTRIGAGvTLENCLVGDDCILHSG 123
                 56888889999999999557899***********9986599************76439*********998754 PP

  == domain 2    score: 4.1 bits;  conditional E-value: 0.014
   TIGR01208 250 kieGrvkveegakivnsvirGPaviGedviiens.yigpytsigegvvikd 299
                 +i   v+v++g+ i ++  r  +viG+++ ++n   ig+ + ig++ ++  
  MMETSP1137-20121227|2085_1 151 RIGDGVEVGAGSCIDRGSWRD-TVIGDNTKLDNMvQIGHNVQIGRNCMLCA 200
                 566668888888887777775.68999999999878999999999887643 PP

>> TIGR02353  NRPS_term_dom: non-ribosomal peptide synthetase terminal domain of unknown function
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.7   0.3     0.003      0.83     163     190 ..      73     100 ..      70     108 .. 0.77
   2 !    8.7   0.2   0.00036       0.1     607     675 ..     138     213 ..     118     216 .. 0.72
   3 !    9.8   0.5   0.00017     0.048     128     226 ..     180     271 ..     170     282 .. 0.85

  Alignments for each domain:
  == domain 1    score: 5.7 bits;  conditional E-value: 0.003
   TIGR02353 163 vgddafvGtrsvldidtaiGdraqleas 190
                 v ++af+G+r+++  ++++G++ +++a+
  MMETSP1137-20121227|2085_1  73 VRAHAFIGARAIVSDGAVVGTKVKVGAN 100
                 6788899999999999999888887765 PP

  == domain 2    score: 8.7 bits;  conditional E-value: 0.00036
   TIGR02353 607 dstdltErdl..vtigddstlnegsvlQtHlfedrvl....kvdt.vtigdgatlgpsaivlygavvgedavlgpd 675
                 d++ +   +l  v+igd++++++gs++   +  d v+    k+d+ v ig  + +g + +    + +  ++ lg+ 
  MMETSP1137-20121227|2085_1 138 DGMMVKKPQLlrVRIGDGVEVGAGSCIDRGSWRDTVIgdntKLDNmVQIGHNVQIGRNCMLCAHTGMAGSSSLGDY 213
                 5566655555448899999999999999999999997555567643789999999999998888888888888875 PP

  == domain 3    score: 9.8 bits;  conditional E-value: 0.00017
   TIGR02353 128 vtdLltiGagvivekevdllgyrvergrlriGsvrvgddafvGtrsvldidtaiGdraqleasSalasgqsipegerWaGsPAqkvgaakrkvqearpa 226
                   ++++iG++v +  + +l ++         Gs  +gd  ++G +s +    ++ +  +++a S +++  si +   + G PAq++ +  r+v+ ar a
  MMETSP1137-20121227|2085_1 180 LDNMVQIGHNVQIGRNCMLCAHTGM-----AGSSSLGDYCVLGGKSGVADHVSLTNHVRVAAMSGVTK--SISHPGDYGGMPAQPIAQWRRQVASARRA 271
                 6789**************9876544.....5788899999**************************99..9999999*********9988888877755 PP

>> TIGR02287  PaaY: phenylacetic acid degradation protein PaaY
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   2.1   4.1e-05     0.011      75     125 ..      58     109 ..      51     117 .. 0.82
   2 ?    4.4   3.5     0.022       5.9      44     132 ..     146     235 ..     106     285 .. 0.68

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 4.1e-05
   TIGR02287  75 nghvghgailh.gcrvgrnalvgmnavvmdgavigessivaasafvkaglei 125
                   hv  +a l  +  v+ +a++g  a+v dgav+g +  v+a + + ag+ +
  MMETSP1137-20121227|2085_1  58 SAHVHPSAQLSpTAVVRAHAFIGARAIVSDGAVVGTKVKVGANTRIGAGVTL 109
                 5688888888724567889***********************9999998765 PP

  == domain 2    score: 4.4 bits;  conditional E-value: 0.022
   TIGR02287  44 dfgrivlkeganvqd.tcvmhgfpgqdtvveenghvghg.ailhgcrvgrnalvgmnavvmdgavigessivaasafvkagleiaaqvlvv 132
                 ++ r+ + +g +v   +c+  g    dtv+++n ++     i h+ ++grn+++   + +   + +g+ ++++  + v  ++ ++ +v v+
  MMETSP1137-20121227|2085_1 146 QLLRVRIGDGVEVGAgSCIDRG-SWRDTVIGDNTKLDNMvQIGHNVQIGRNCMLCAHTGMAGSSSLGDYCVLGGKSGVADHVSLTNHVRVA 235
                 4556666677777541455555.45788888888887641577888888888888887777777888888887777777666666655554 PP

>> TIGR04008  WcaF: colanic acid biosynthesis acetyltransferase WcaF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   0.5     0.031       8.5     107     157 ..      50     103 ..      39     127 .. 0.61
   2 ?    8.1   0.1    0.0018       0.5      92     162 ..     156     227 ..     142     257 .. 0.77

  Alignments for each domain:
  == domain 1    score: 4.1 bits;  conditional E-value: 0.031
   TIGR04008 107 ctgshdyaskhfdinat..p.ivigekcwlatdvfvapgvtigdgtvvgarssv 157
                 c  s  + s+h++ +a+  p  v+  ++++ +  +v+ g  +g+   vga + +
  MMETSP1137-20121227|2085_1  50 CNTSNIHPSAHVHPSAQlsPtAVVRAHAFIGARAIVSDGAVVGTKVKVGANTRI 103
                 555656666665544432232455666677777777777777777777766544 PP

  == domain 2    score: 8.1 bits;  conditional E-value: 0.0018
   TIGR04008  92 itigahsvisqksylctgshdyaskhfdin.atpivigekcwlatdvfvapgvtigdgtvvgarssvfkslp 162
                 + +ga s i + s+  t   d +     ++  + + ig++c l++   +a   ++gd  v+g +s v   + 
  MMETSP1137-20121227|2085_1 156 VEVGAGSCIDRGSWRDTVIGDNTKLDNMVQiGHNVQIGRNCMLCAHTGMAGSSSLGDYCVLGGKSGVADHVS 227
                 678888888888887776666655443333146788999999999999999999999999999999976554 PP

>> TIGR03308  phn_thr-fam: phosphonate metabolim protein, transferase hexapeptide repeat family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.3     0.044        12     124     146 ..      74      96 ..      58     108 .. 0.50
   2 ?    2.4   3.2     0.094        26      18      66 ..      93     141 ..      76     227 .. 0.55
   3 ?    6.5   0.1    0.0052       1.4      10      69 ..     179     241 ..     170     251 .. 0.67
   4 ?    1.4   0.1      0.19        52     123     165 ..     222     263 ..     199     274 .. 0.71

  Alignments for each domain:
  == domain 1    score: 3.5 bits;  conditional E-value: 0.044
   TIGR03308 124 lPgvtiGnGavvaagavvtkdva 146
                      iG  a+v+ gavv   v 
  MMETSP1137-20121227|2085_1  74 RAHAFIGARAIVSDGAVVGTKVK 96 
                 33334444444444444433332 PP

  == domain 2    score: 2.4 bits;  conditional E-value: 0.094
   TIGR03308  18 kesklGrytevgertrleevalddysyvereadiayttiGkfvsiaasv 66 
                 +++k+G+ t +g+ + le++ ++d + ++  + + +   G +v+   ++
  MMETSP1137-20121227|2085_1  93 TKVKVGANTRIGAGVTLENCLVGDDCILHSGVRVGADGFGFYVDTDGMM 141
                 5677777777777777777777776666666666655555555544443 PP

  == domain 3    score: 6.5 bits;  conditional E-value: 0.0052
   TIGR03308  10 tihesael.kesklGrytevgertrle.evalddysyvereadi.ayttiGkfvsiaasvrin 69 
                 ++++ +++ +++++Gr + + ++t ++  ++l+dy+ +  ++ +    ++   v +aa++ + 
  MMETSP1137-20121227|2085_1 179 KLDNMVQIgHNVQIGRNCMLCAHTGMAgSSSLGDYCVLGGKSGVaDHVSLTNHVRVAAMSGVT 241
                 556666664678888888888888776256788888887666551456777778888777664 PP

  == domain 4    score: 1.4 bits;  conditional E-value: 0.19
   TIGR03308 123 ilPgvtiGnGavvaagavvtkdvasytivaGvpaklirrrfae 165
                 +   v++ n   vaa + vtk ++     +G+pa+ i + + +
  MMETSP1137-20121227|2085_1 222 VADHVSLTNHVRVAAMSGVTKSISHPGDYGGMPAQPIAQ-WRR 263
                 555667777778888888999988888888888888865.344 PP

>> TIGR00965  dapD: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   1.8    0.0042       1.1     104     160 ..      68     124 ..      53     179 .. 0.53
   2 ?    6.8   1.0    0.0031      0.86     132     192 ..     174     226 ..     158     241 .. 0.78

  Alignments for each domain:
  == domain 1    score: 6.4 bits;  conditional E-value: 0.0042
   TIGR00965 104 vpgavvrrgafi.aknvvlmpsyvnigayvdegtmvdtwatvgscaqigknvhlsggv 160
                  p+avvr  afi a+ +v   + v     v   t + +  t+  c  +g ++ l  gv
  MMETSP1137-20121227|2085_1  68 SPTAVVRAHAFIgARAIVSDGAVVGTKVKVGANTRIGAGVTLENCL-VGDDCILHSGV 124
                 4555555555552333333333333333344444444455555553.55555555554 PP

  == domain 2    score: 6.8 bits;  conditional E-value: 0.0031
   TIGR00965 132 vdegtmvdtwatvgscaqigknvhlsggvgiggvleplqakpviiedncfigarseivegv 192
                 + + t +d    +g   qig+n+ l   +g+ g           + d c +g +s +++ v
  MMETSP1137-20121227|2085_1 174 IGDNTKLDNMVQIGHNVQIGRNCMLCAHTGMAGS--------SSLGDYCVLGGKSGVADHV 226
                 5677899999****************99999884........3456666666666666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (333 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       148  (0.03608); expected 82.0 (0.02)
Passed bias filter:                      121  (0.0294978); expected 82.0 (0.02)
Passed Vit filter:                        24  (0.0058508); expected 4.1 (0.001)
Passed Fwd filter:                        15  (0.00365675); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.52u 0.18s 00:00:00.70 Elapsed: 00:00:00.60
# Mc/sec: 732.54
//
Query:       MMETSP1137-20121227|2086_1  [L=791]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (791 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       147  (0.0358362); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.50u 0.16s 00:00:00.66 Elapsed: 00:00:00.56
# Mc/sec: 1864.35
//
Query:       MMETSP1137-20121227|2088_1  [L=247]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (247 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        56  (0.0136519); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.14s 00:00:00.34 Elapsed: 00:00:00.34
# Mc/sec: 958.86
//
Query:       MMETSP1137-20121227|2089_1  [L=308]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (308 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        92  (0.0224281); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.13s 00:00:00.37 Elapsed: 00:00:00.37
# Mc/sec: 1098.72
//
Query:       MMETSP1137-20121227|2090_1  [L=229]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.3e-24   84.6   0.0    1.8e-24   84.2   0.0    1.1  1  TIGR00231 small_GTP: small GTP-binding protein domain
    9.8e-08   29.2   0.0    1.1e-06   25.7   0.0    1.6  2  TIGR03594 GTPase_EngA: ribosome-associated GTPase EngA
    4.2e-05   20.7   0.0      0.003   14.6   0.0    2.1  2  TIGR03597 GTPase_YqeH: ribosome biogenesis GTPase YqeH
    0.00031   17.5   0.0     0.0044   13.7   0.0    2.0  2  TIGR03918 GTP_HydF: [FeFe] hydrogenase H-cluster maturation GTPase HydF
  ------ inclusion threshold ------
      0.012   12.5   0.2       0.18    8.7   0.1    2.0  1  TIGR00450 mnmE_trmE_thdF: tRNA modification GTPase TrmE


Domain annotation for each model (and alignments):
>> TIGR00231  small_GTP: small GTP-binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.2   0.0   2.2e-27   1.8e-24       3     160 ..      36     187 ..      34     190 .. 0.91

  Alignments for each domain:
  == domain 1    score: 84.2 bits;  conditional E-value: 2.2e-27
   TIGR00231   3 eikivivGhvdvGKstLlnsllknkisiteskpgvtrdyvteqieedGktykvnllDTaGqedfdairrlyvreverslevvdivilvldveeglekqtkeiiheakkkgvpiilvvnKiDlkddlktkvkslfaklnaepiielsaetgknidklfk 160
                   ki ++G+++vGKs L +++l n+  + +  ++   ++     +++G+++ v+++DTaGqe+f+ + ++y+ ++ + + ++d++    ++++ + +++ke+++++   ++p+i v+nKiD      t+  + f+k  +  ++  sa +g+n+ ++f+
  MMETSP1137-20121227|2090_1  36 ALKIILLGDSAVGKSKLVERFLMNDYQPRQL-STYALTLFRHAATINGEEVNVDFWDTAGQERFNSMHPAYYHMAHACIICFDVTRK-QTYKNLP-AWYKELRDYRG--SIPVICVANKIDVDL-KVTQKEFAFPKKHNMELFYCSASDGTNVVSAFN 187
                 579**********************777776.8888888888899******************************************.9999999.***********..************988.44666777888888889***********99997 PP

>> TIGR03594  GTPase_EngA: ribosome-associated GTPase EngA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.5   0.0   0.00023      0.19     170     232 ..      31      94 ..       9     101 .. 0.61
   2 !   25.7   0.0   1.4e-09   1.1e-06       2     166 ..      38     199 ..      37     212 .. 0.82

  Alignments for each domain:
  == domain 1    score: 8.5 bits;  conditional E-value: 0.00023
   TIGR03594 170 eeeeepikiaiiGrpNvGKStLvNallgee...rvivsdiaGtTrDsidievevkgkkylliDTAG 232
                 +++++++ki ++G   vGKS Lv ++l ++   r    ++   T      +++ ++ ++ + DTAG
  MMETSP1137-20121227|2090_1  31 HASDNALKIILLGDSAVGKSKLVERFLMNDyqpRQ--LSTYALTLFRHAATINGEEVNVDFWDTAG 94 
                 23356799999999999999999998876622222..23334444444445555555566666666 PP

  == domain 2    score: 25.7 bits;  conditional E-value: 1.4e-09
   TIGR03594   2 vvaivGrpNVGKStLfNrlvkkr.kAivedtpgvTRDrkygeaelkgkefiliDTgGleeeedelekeireqaelaieeadvilfvvdareglteeDeeiaklLrksk..kpvilvvNKvdnk.keeaeaaefyslGlgevlaiSaehgrgikdLldeileelpeeeee 166
                 ++ ++G   VGKS L+ r++ +  +    +t  +T  r+ ++++ ++ ++ + DT+G e  ++      ++ a   +++a +i+f v  ++   ++  +  k Lr ++   pvi v+NK+d + k +++   f +    e+++ Sa++g+++ + +++ +e+  e +++
  MMETSP1137-20121227|2090_1  38 KIILLGDSAVGKSKLVERFLMNDyQPRQLSTYALTLFRHAATINGEEVNVDFWDTAGQERFNS------MHPAYYHMAHACIICFDVTRKQTY-KNLPAWYKELRDYRgsIPVICVANKIDVDlKVTQKEFAFPKKHNMELFYCSASDGTNVVSAFNAAIEKAVEYSKS 199
                 6899**************77665266777999*************************943332......356778889999999988876644.445678899998876689*********9966677788899999999**************999999988766554 PP

>> TIGR03597  GTPase_YqeH: ribosome biogenesis GTPase YqeH
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.0   3.7e-06     0.003     133     243 ..      16     123 ..       2     129 .. 0.63
   2 !    4.5   0.0    0.0043       3.5      81     103 ..     130     152 ..     126     194 .. 0.90

  Alignments for each domain:
  == domain 1    score: 14.6 bits;  conditional E-value: 3.7e-06
   TIGR03597 133 lvsakkkkglkellelikkarekkdvyvvGvtNVGKSsliNkllklnkgkkkvittSkfpgTTld.lieipl.dkesvllDtpGiineeqianllskkdlkkivpkkeikpkt 243
                 ++s+++  +  ++le  +++    +++++G + VGKS l+ + l  n+ +++    S +  T       i+  + +    Dt+G  + +++     +     i+     +++t
  MMETSP1137-20121227|2090_1  16 MTSSAEAAEAASILEHASDN--ALKIILLGDSAVGKSKLVERFLM-NDYQPR--QLSTYALTLFRhAATINGeEVNVDFWDTAGQERFNSMHPAYYHMAHACIICFDVTRKQT 123
                 55555555555555554444..559*******************5.555555..47777766655344555522344577888877777776555555555555555555555 PP

  == domain 2    score: 4.5 bits;  conditional E-value: 0.0043
   TIGR03597  81 likelkrfvkenkvllvvNKidl 103
                 + kel+++ ++ +v+ v+NKid+
  MMETSP1137-20121227|2090_1 130 WYKELRDYRGSIPVICVANKIDV 152
                 7899******************7 PP

>> TIGR03918  GTP_HydF: [FeFe] hydrogenase H-cluster maturation GTPase HydF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.0     0.021        18       5      29 ..      34      58 ..      30      62 .. 0.82
   2 !   13.7   0.0   5.3e-06    0.0044      90     173 ..     112     201 ..      86     215 .. 0.65

  Alignments for each domain:
  == domain 1    score: 1.9 bits;  conditional E-value: 0.021
   TIGR03918  5 aerlhialfGrrNaGKSsliNaltg 29
                 + l+i l+G   +GKS l+  ++ 
  MMETSP1137-20121227|2090_1 34 DNALKIILLGDSAVGKSKLVERFLM 58
                56789**************987665 PP

  == domain 2    score: 13.7 bits;  conditional E-value: 5.3e-06
   TIGR03918  90 allvvdaeae.leeleeelleelkek..kipvivvlnkidlkeeeke.keklekkkeeevvlvsakekeg.ieelkealiellpeea.ee 173
                  ++++d + + + +   ++++el++   +ipvi+v+nkid+  + ++ + +  kk+++e+ ++sa+++++ ++++++a+ ++++ ++  +
  MMETSP1137-20121227|2090_1 112 CIICFDVTRKqTYKNLPAWYKELRDYrgSIPVICVANKIDVDLKVTQkEFAFPKKHNMELFYCSASDGTNvVSAFNAAIEKAVEYSKsPS 201
                 44455544330333334677777754227***********9988777355677888999999****999945677788877776554344 PP

>> TIGR00450  mnmE_trmE_thdF: tRNA modification GTPase TrmE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   0.1   0.00022      0.18     206     234 ..      33      61 ..      20     222 .. 0.56

  Alignments for each domain:
  == domain 1    score: 8.7 bits;  conditional E-value: 0.00022
   TIGR00450 206 lkdglklaivGktNvGKSSLlNallkkdr 234
                  ++ lk+ ++G+  vGKS L+  +l +d 
  MMETSP1137-20121227|2090_1  33 SDNALKIILLGDSAVGKSKLVERFLMNDY 61 
                 47889999999999999999999998884 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (229 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       152  (0.0370551); expected 82.0 (0.02)
Passed bias filter:                      136  (0.0331546); expected 82.0 (0.02)
Passed Vit filter:                        21  (0.00511945); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.28u 0.20s 00:00:00.48 Elapsed: 00:00:00.38
# Mc/sec: 795.41
//
Query:       MMETSP1137-20121227|2091_1  [L=544]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.2e-64  216.4   0.0    1.6e-64  216.1   0.0    1.1  1  TIGR00490 aEF-2: translation elongation factor aEF-2
    5.9e-30  101.8   0.0    1.1e-14   51.3   0.0    2.1  2  TIGR00484 EF-G: translation elongation factor G
    4.7e-14   49.4   0.0    3.7e-08   29.9   0.0    2.1  2  TIGR01394 TypA_BipA: GTP-binding protein TypA/BipA


Domain annotation for each model (and alignments):
>> TIGR00490  aEF-2: translation elongation factor aEF-2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  216.1   0.0   1.2e-67   1.6e-64     248     702 ..       2     481 ..       1     490 [. 0.84

  Alignments for each domain:
  == domain 1    score: 216.1 bits;  conditional E-value: 1.2e-67
   TIGR00490 248 dmvikhlpspaeaqkyriaviwkgdlnseagkamlncdpegplavvitkivvdkhagev.avgrlysgaikkgsevylv......dsk..akar.iqqvgvymgpervevdeipagnivavvglkea.vageticst...dkkikafeaikhisepvvtvaieakntkdlpklievlrkvakedptvkveineetgehlisgmgelhleiivkkirek.agvevetsepivvyretvtgtspv.vegkspnkhnrlyivvepleesvlqafkegkikdvkvkkkeiakeliea.gldkeeakrveevy..e..gnllinvtrgiq....yldevkelilegfkeamrngpvakekvmgvkvklvdaklhedavhrgpaqvipavrkgifaallqaepvlleplqkvfinvpqdlmgaatreiqnrrgqilem.kqeg.dmvtikakvpvaemfgfagairgategralwstefagfekvpre 702
                 d  + hlpsp    k +i   ++g l     + mlncd +g l v +tk+  +++     a gr+ sg++k g+ v ++      +++  + +r + ++ +y    rvev+e+pag    + g+  + v   ti ++   ++    ++a++  +  v+ +a e  n+ +lpk++e lrk+ k  p +  ++ ee+geh++ g gel+l+ +++  r+   ++ev++s+p+v + etv  ts+    + +pn + +l ++ eple+ + + +++g  + ++ ++k++ + +++    d   a+ v+ +   e   n+l + t         l+ ++++ l+gf+ + r+gp+  e++  vk k++da +    +hrg  q+ip++r   ++a l a p l+ep+ +v i+ p d + a+   +  rrg +     + g  +  ika vpv + fgf  ++r+ t+g+a+    f  +  vp +
  MMETSP1137-20121227|2091_1   2 DACVAHLPSPLAGAKTKIENSYSGALSEPFVEDMLNCDANGLLMVNVTKMYHKPDCETFdAFGRVLSGTLKVGQSVNVLgetyslEDQedSAERvVTRLWIYQARYRVEVEEVPAGCWALIEGVEASlVKTGTITAAkgsERARVHLQAVDFSTISVMKIAAEPLNPSELPKMLEGLRKLNKAYPLLSTKV-EESGEHVVMGTGELYLDCVMHDLRHVySEMEVKVSDPVVAFCETVVETSSLkCFAETPNGKSKLTMIAEPLEKGLAEDIEKG-AVSIHWDRKKLGEFFQKRyDWDLLAARSVWGFApsEkgANVLADDTLPSEvdkgLLNSIRDFXLQGFQWSCREGPLCDEPMRNVKFKILDATIAALPIHRGGGQIIPTARRVAYSAXLMATPRLMEPVFFVDISCPIDCVPAIYTVLARRRGHVTSEgPRPGtPIHQIKAYVPVIDSFGFETDLRSHTQGQAFCLCVFDHWAIVPGD 481
                 67899**********************************************99999886478***********9876651111113331122342567889***************999999987652445566544111344556899999999********************************9887.789**************999999888579*****************9988526799**************************.6789999*999999887525777788888866422312588887664322112259*************************************************************************************************98651344515778************************9887777777777755 PP

>> TIGR00484  EF-G: translation elongation factor G
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.3   0.0   8.1e-18   1.1e-14     325     492 ..      62     244 ..       1     273 [. 0.72
   2 !   48.6   0.0   5.4e-17   7.4e-14     543     680 ..     340     481 ..     330     490 .. 0.82

  Alignments for each domain:
  == domain 1    score: 51.3 bits;  conditional E-value: 8.1e-18
   TIGR00484 325 tfvrvysGvlksGsevl........nsrkekker.vgrlvkmhankreeieevraGdiaaliGlkd..tttGdtlc...dekaevilesmefpe.PvislavePktkadqekmgialgklaeedPtfkvftdeesgqtiiaGmGelhldiivdrlkref.kvevnvGkPqvayretirkkaeve 492
                 +f rv sG+lk G+ v         + +++  er v+rl    a+ r e+eev aG  a + G++   + tG   +    e+a v l++++f+   v+++a eP + ++  km   l kl +  P + + + eesg+ ++ G Gel+ld +++ l+  + ++ev+v  P va+ et+ ++++++
  MMETSP1137-20121227|2091_1  62 AFGRVLSGTLKVGQSVNvlgetyslEDQEDSAERvVTRLWIYQARYRVEVEEVPAGCWALIEGVEAslVKTGTITAakgSERARVHLQAVDFSTiSVMKIAAEPLNPSELPKMLEGLRKLNKAYPLLSTKV-EESGEHVVMGTGELYLDCVMHDLRHVYsEMEVKVSDPVVAFCETVVETSSLK 244
                 688**********988522222111233444555257888999**************999999987324566544412146789********874799****************************99987.69*********************9988469***************9988764 PP

  == domain 2    score: 48.6 bits;  conditional E-value: 5.4e-17
   TIGR00484 543 GleealesGvlaGyPvvdikvtlfdGsyhdvdsselafkl...aaslalkeavkkakPvllePimkvevevPeeylGdvlGdlsrrrgliegseer..esvkvvkaevPlsemfGyatdlrsatqGraeysmeflkyaevPks 680
                 G++ + ++G+l   P+ ++k ++ d +   +       ++   a  +a+  a   a P l+eP+  v+++ P + +  +   l+rrrg ++++  r  + ++++ka vP+ + fG+ tdlrs+tqG+a     f+++a vP  
  MMETSP1137-20121227|2091_1 340 GFQWSCREGPLCDEPMRNVKFKILDATIAALPIHRGGGQIiptARRVAY-SAXLMATPRLMEPVFFVDISCPIDCVPAIYTVLARRRGHVTSEGPRpgTPIHQIKAYVPVIDSFGFETDLRSHTQGQAFCLCVFDHWAIVPGD 481
                 7777788888888888888888888887776665555554221344444.577789**********************************9887662256899*************************9999******99965 PP

>> TIGR01394  TypA_BipA: GTP-binding protein TypA/BipA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.9   0.0   2.7e-11   3.7e-08     218     384 ..      62     232 ..      37     243 .. 0.76
   2 !   17.2   0.0   1.8e-07   0.00025     392     474 ..     398     481 ..     388     487 .. 0.91

  Alignments for each domain:
  == domain 1    score: 29.9 bits;  conditional E-value: 2.7e-11
   TIGR01394 218 aigrverGkvkkgqqvallkkd......gkiekariskllafeglerveideaeaGdivavaGledieige.tiadae..eaealpllkvdePtlsmtfsvndsPlaGkegkkvtsrkirdrLereletnvalrveeteeadkfevsGrGeLhlsiLietmrr..eGfelsvskPkvi 384
                 a grv +G++k gq+v++l ++      +  ++  +++l  +++  rve++e+ aG    + G+e+  +   ti++a+  e   + l +vd  t+s+ +++   Pl  +e  k+        L r l++   l  +++ee+ ++ v G GeL l  ++ ++r      e++vs P v 
  MMETSP1137-20121227|2091_1  62 AFGRVLSGTLKVGQSVNVLGETysledqEDSAERVVTRLWIYQARYRVEVEEVPAGCWALIEGVEASLVKTgTITAAKgsERARVHLQAVDFSTISV-MKIAAEPLNPSELPKMLE-----GL-RKLNKAYPLLSTKVEESGEHVVMGTGELYLDCVMHDLRHvySEMEVKVSDPVVA 232
                 579**************99877444332344455688999*************************988753266665411555688999******97.689999***999665443.....23.34555555666666666779******************8334577888999875 PP

  == domain 2    score: 17.2 bits;  conditional E-value: 1.8e-07
   TIGR01394 392 klePieeltidvpeefvgavieklgkrkgelkdmeskgs.GrvrlefkiPsrgliGfrtefltatrGegilnrvfdeyeplkge 474
                  +eP+  + i +p + v a+   l++r+g++++  ++      +++  +P    +Gf+t++ ++t+G+++   vfd+++ + g+
  MMETSP1137-20121227|2091_1 398 LMEPVFFVDISCPIDCVPAIYTVLARRRGHVTSEGPRPGtPIHQIKAYVPVIDSFGFETDLRSHTQGQAFCLCVFDHWAIVPGD 481
                 68******************************999987636789*********************************9877665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (544 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        68  (0.0165773); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.42u 0.15s 00:00:00.56 Elapsed: 00:00:00.51
# Mc/sec: 1407.88
//
Query:       MMETSP1137-20121227|2092_1  [L=217]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (217 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        62  (0.0151146); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.16s 00:00:00.35 Elapsed: 00:00:00.24
# Mc/sec: 1193.40
//
Query:       MMETSP1137-20121227|2093_1  [L=139]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (139 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        42  (0.0102389); expected 82.0 (0.02)
Passed bias filter:                       38  (0.00926377); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.14s 00:00:00.31 Elapsed: 00:00:00.23
# Mc/sec: 797.67
//
Query:       MMETSP1137-20121227|2094_1  [L=73]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (73 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        45  (0.0109703); expected 82.0 (0.02)
Passed bias filter:                       39  (0.00950756); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.18s 00:00:00.31 Elapsed: 00:00:00.39
# Mc/sec: 247.06
//
Query:       MMETSP1137-20121227|2095_1  [L=123]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (123 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        71  (0.0173086); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:00.31
# Mc/sec: 523.70
//
Query:       MMETSP1137-20121227|2096_1  [L=447]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      7e-09   33.2   4.9    1.3e-08   32.3   3.4    1.4  1  TIGR00599 rad18: DNA repair protein rad18
  ------ inclusion threshold ------
       0.44    7.7   6.1       0.85    6.8   2.5    2.1  2  TIGR00570 cdk7: CDK-activating kinase assembly factor MAT1


Domain annotation for each model (and alignments):
>> TIGR00599  rad18: DNA repair protein rad18
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.3   3.4   6.5e-12   1.3e-08      25      69 ..      33      77 ..      22      94 .. 0.86

  Alignments for each domain:
  == domain 1    score: 32.3 bits;  conditional E-value: 6.5e-12
   TIGR00599 25 tslRChvCkdffkaPvltsCsHtFCslCiRrcL.seepkCPlCrae 69
                  l C +C   +  P+   C+H FC+lC+R +L + +p+CPlCr++
  MMETSP1137-20121227|2096_1 33 DVL-CPICLHILIRPLSLHCGHSFCALCVRPVLaRRQPRCPLCRSD 77
                444.***************************994579*******86 PP

>> TIGR00570  cdk7: CDK-activating kinase assembly factor MAT1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   2.5   0.00041      0.85       2      50 ..      32      75 ..      31      81 .. 0.85
   2 ?    0.8   0.0     0.027        54     237     296 ..     181     242 ..     170     253 .. 0.79

  Alignments for each domain:
  == domain 1    score: 6.8 bits;  conditional E-value: 0.00041
   TIGR00570  2 ddqaCPrCkttkyrnPslkllvnvCghtlCesCvdllfvrGsgsCpeCd 50
                dd  CP+C     r  sl      Cgh +C  Cv  +  r    Cp C 
  MMETSP1137-20121227|2096_1 32 DDVLCPICLHILIRPLSL-----HCGHSFCALCVRPVLARRQPRCPLCR 75
                788888887776666555.....6**********************997 PP

  == domain 2    score: 0.8 bits;  conditional E-value: 0.027
   TIGR00570 237 pvqkseealfeyeplqi..etegpavpeleelvrqgylkhvraaspqdiagGytsslacera 296
                 +vq+++ + + y+ +    e  g++v  + +l +   +k     + + +a+ ++ss  ++ a
  MMETSP1137-20121227|2096_1 181 EVQHQHHIGYGYQHMAKssEHDGHSVQPQMMLASATAMKALAISAGKGVASAFQSSGRVKAA 242
                 68888888899988765116779***********999999999999*******998666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (447 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       110  (0.0268162); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.29u 0.18s 00:00:00.47 Elapsed: 00:00:00.63
# Mc/sec: 936.49
//
Query:       MMETSP1137-20121227|2097_1  [L=621]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.5e-14   49.6   4.6    9.5e-14   49.6   3.2    3.5  4  TIGR00880 2_A_01_02: multidrug resistance protein
    3.1e-10   37.8   7.0    3.1e-10   37.8   4.8    2.1  2  TIGR00710 efflux_Bcr_CflA: drug resistance transporter, Bcr/CflA subfamily
    6.4e-07   26.3   1.4    1.1e-06   25.6   1.0    1.3  1  TIGR00898 2A0119: cation transport protein
    9.5e-06   22.6   4.0    9.5e-06   22.6   2.8    2.4  3  TIGR00895 2A0115: MFS transporter, aromatic acid:H+ symporter (AAHS) family
    2.9e-05   20.8   4.2    5.7e-05   19.8   2.9    1.4  1  TIGR00711 efflux_EmrB: drug resistance MFS transporter, drug:H+ antiporter-2 (14 Spanner) (DHA2) family
    0.00081   16.4   1.2    0.00081   16.4   0.8    2.0  2  TIGR00883 2A0106: MFS transporter, metabolite:H+ symporter (MHS) family protein
  ------ inclusion threshold ------
      0.069    8.8   1.2      0.098    8.3   0.9    1.1  1  TIGR01299 synapt_SV2: synaptic vesicle protein SV2


Domain annotation for each model (and alignments):
>> TIGR00880  2_A_01_02: multidrug resistance protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.1   0.1       5.8   3.4e+03      14      38 ..      24      29 ..      15      42 .. 0.44
   2 !   49.6   3.2   1.6e-16   9.5e-14       2     111 ..      63     171 ..      62     203 .. 0.92
   3 ?   -1.4   1.8      0.88   5.2e+02      78     134 ..     435     491 ..     405     505 .. 0.49
   4 ?   -2.5   7.1       1.9   1.1e+03      51     137 ..     515     605 ..     456     608 .. 0.63

  Alignments for each domain:
  == domain 1    score: -4.1 bits;  conditional E-value: 5.8
   TIGR00880 14 vsplsglltdrvGrkpvllvglfif 38
                vs++                    +
  MMETSP1137-20121227|2097_1 24 VSLF-------------------AC 29
                2222...................22 PP

  == domain 2    score: 49.6 bits;  conditional E-value: 1.6e-16
   TIGR00880   2 lllagyAlgqlvvsplsglltdrvGrkpvllvglfifvlsqllfalssnitvliiarilqGfgaaaalvagaaliadiikeeersvalgllsagialgpilGpllGavla 111
                 +l + y l q+ +s + g ++d++Grk vl+ g ++ + +++ + lss++   + ar l+G   +   v ++a ++di+ + +r++a++l+ +++++++ ++pl+G++la
  MMETSP1137-20121227|2097_1  63 MLGTCYNLLQVPASAFWGKMSDIFGRKRVLMTGQLTLMTATACLGLSSSFGAALAARCLAGALNGNNAV-TRAALRDITLPSQRAKAFSLFGLMLSVAFGIAPLFGSFLA 171
                 5567899999***************************************************99988765.56999*********************************98 PP

  == domain 3    score: -1.4 bits;  conditional E-value: 0.88
   TIGR00880  78 diikeeersvalgllsagialgpilGpllGavlaqalgwralflilallallafill 134
                 ++++    +   gl  +   lg++l p++ +++a    + ++   l+++  +++ + 
  MMETSP1137-20121227|2097_1 435 ELFPLFAAADSPGLDISPSQLGLSLTPAAAGLIAGSCAFPWIDKRLGATGSFVASCA 491
                 444444444444455555555555555555555544444444444444444433333 PP

  == domain 4    score: -2.5 bits;  conditional E-value: 1.9
   TIGR00880  51 itvliiarilqGfgaaaalvagaaliadiikeeersvalgllsagialgpilGpl.lGavla.qalgwralf...lilallallafilllfl 137
                  t +ii  ++ G+++ + ++a  a+++  + ++  +   g++sa++++g   +p+ +G++ a + ++ r+ +   + la+ a++a+++++++
  MMETSP1137-20121227|2097_1 515 WTAIIIISLVRGVSGPIGFPAL-AILINNSLSKDIGLWNGVASACMSAGRAAAPAaVGSLWAlTLSHPRWHYpgdYHLAFYAMAAAATVCIV 605
                 3456666677777777777766.444444555678899999999999999999972566666866666666655667777777777777665 PP

>> TIGR00710  efflux_Bcr_CflA: drug resistance transporter, Bcr/CflA subfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.8   4.8   5.3e-13   3.1e-10      23     152 ..      38     170 ..      21     174 .. 0.86
   2 ?    2.7   0.2     0.025        15     239     314 ..     450     529 ..     439     604 .. 0.73

  Alignments for each domain:
  == domain 1    score: 37.8 bits;  conditional E-value: 5.3e-13
   TIGR00710  23 mYlpalpeiakdlsvsasavq....ltltlyllglavgqLllGplsDsyGRkpvlLlgllvfalsslvlalsenietllvlRflqafgasaalVisqalvrDiyakeelskvysilmlllalaPllapliGgyv 152
                 m  p lp + +d++++  +v     +  t y l    +  ++G++sD++GRk vl+ g l  + +   l ls++    l++R l +      +V ++a +rDi    +  k +s+ +l+l +a  +apl G+++
  MMETSP1137-20121227|2097_1  38 MLYPMLPYMVQDFGIPRDQVGfyvgMLGTCYNLLQVPASAFWGKMSDIFGRKRVLMTGQLTLMTATACLGLSSSFGAALAARCLAGALNGNNAV-TRAALRDITLPSQRAKAFSLFGLMLSVAFGIAPLFGSFL 170
                 556999*********9887652111566777777677899**************************9*****************9998887776.67888***99889************************98 PP

  == domain 2    score: 2.7 bits;  conditional E-value: 0.025
   TIGR00710 239 vspevfgllfalniialifgsfligrlvkkigaksllrialvllivsavll....vltallglvslalviavailvgigv 314
                 +sp++ gl+ ++ +  li gs     + k++ga   ++ +++++++  v +    ++   +   +++ +i++ ++ g++ 
  MMETSP1137-20121227|2097_1 450 ISPSQLGLSLTPAAAGLIAGSCAFPWIDKRLGATGSFVASCAIFLAVNVCMpqlrWVESESHKAMWTAIIIISLVRGVSG 529
                 799999999999999999999999999999********999999887776632223334444567777887777777633 PP

>> TIGR00898  2A0119: cation transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.6   1.0   1.9e-09   1.1e-06     128     234 ..      61     166 ..      40     173 .. 0.82

  Alignments for each domain:
  == domain 1    score: 25.6 bits;  conditional E-value: 1.9e-09
   TIGR00898 128 vkltqsvvfvGvLlGslvlGqlsDrfGRkkvLllstlvtavsgvltafspnytvflvlrlLvGvgiagivvvalvLitEflpkkaRaivgilievffalGllllall 234
                 v ++ +++++     s+++G++sD fGRk+vL+   l  +  + +  +s ++   l  r L+G   + + v+   L    lp+ +Ra++  l  ++ ++ + + +l+
  MMETSP1137-20121227|2097_1  61 VGMLGTCYNLLQVPASAFWGKMSDIFGRKRVLMTGQLTLMTATACLGLSSSFGAALAARCLAGALNGNNAVTRAALRDITLPS-QRAKAFSLFGLMLSVAFGIAPLF 166
                 5566777777777899******************************************************9999999888885.56665555555555554444444 PP

>> TIGR00895  2A0115: MFS transporter, aromatic acid:H+ symporter (AAHS) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.6   2.8   1.6e-08   9.5e-06      14     131 ..      17     138 ..       5     175 .. 0.72
   2 ?    2.8   0.1     0.017       9.7      47      93 ..     448     494 ..     439     501 .. 0.84
   3 ?   -0.5   0.2      0.16        95     261     328 ..     488     556 ..     480     566 .. 0.72

  Alignments for each domain:
  == domain 1    score: 22.6 bits;  conditional E-value: 1.6e-08
   TIGR00895  14 yqirvlilsflivlvdGldllvlgfaapalskewgldkvelGfllsagLiGm......vlGallfgplaDrigRkrvllvsillfsvftlasalatnvtqLlvlRflaglGlGgllpnliaLvs 131
                 + +  li+s+ +++ d +  ++l  ++p + +++g+ + ++Gf +  g++G+      v  + + g ++D +gRkrvl+ + l++   t+ ++l+ ++   l++R lag   G       aL  
  MMETSP1137-20121227|2097_1  17 LPWVPLIVSLFACFGDAVVAIMLYPMLPYMVQDFGIPRDQVGFYV--GMLGTcynllqVPASAFWGKMSDIFGRKRVLMTGQLTLMTATACLGLSSSFGAALAARCLAGALNGNNAVTRAALRD 138
                 45777899999999998877777779*************999754..555552222225678899********************************************755555555555544 PP

  == domain 2    score: 2.8 bits;  conditional E-value: 0.017
   TIGR00895  47 wgldkvelGfllsagLiGmvlGallfgplaDrigRkrvllvsillfs 93 
                 +++++++lG  l+ + +G+++G+  f ++  r+g     + s  +f 
  MMETSP1137-20121227|2097_1 448 LDISPSQLGLSLTPAAAGLIAGSCAFPWIDKRLGATGSFVASCAIFL 494
                 689***************************9**98877777766664 PP

  == domain 3    score: -0.5 bits;  conditional E-value: 0.16
   TIGR00895 261 lllvvvYlltsWlPkLlveagaslskaalllvlln.vGgvlgslllgaladrlgpkvlalllllaavfa 328
                 ++ +++ +++  +P L    + s + + +++++++ v gv g + + ala+ ++   +  + l  +v +
  MMETSP1137-20121227|2097_1 488 ASCAIFLAVNVCMPQLRWVESESHKAMWTAIIIISlVRGVSGPIGFPALAILINNSLSKDIGLWNGVAS 556
                 445555667888999988777777777666555542789999999999999999887777777766655 PP

>> TIGR00711  efflux_EmrB: drug resistance MFS transporter, drug:H+ antiporter-2 (14 Spanner) (DHA2) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   2.9   9.8e-08   5.7e-05      25     150 ..      43     171 ..      20     175 .. 0.78

  Alignments for each domain:
  == domain 1    score: 19.8 bits;  conditional E-value: 9.8e-08
   TIGR00711  25 lptlaadlgaslsevqWvi....TsymvanaivIpltgwlakrlgerklflvsvlaFtlssllcgvannlelliifRviQgfggglliplseslllseyppekrglalalvglavlvaPvlGPiLgGwii 150
                 lp ++ d+g   ++v   +    T y + ++      g + + +g++++ +++ l+  +++   g+++++ + + +R + g+ +g    ++ + l  +  p++r++a  l+gl ++va  + P  g ++ 
  MMETSP1137-20121227|2097_1  43 LPYMVQDFGIPRDQVGFYVgmlgTCYNLLQVPASAFWGKMSDIFGRKRVLMTGQLTLMTATACLGLSSSFGAALAARCLAGALNGNN-AVTRAALRDITLPSQRAKAFSLFGLMLSVAFGIAPLFGSFLA 171
                 5667777777777766544111255555555444455557889******************************************95.567888999999*****************9999999888875 PP

>> TIGR00883  2A0106: MFS transporter, metabolite:H+ symporter (MHS) family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.8   1.4e-06   0.00081     225     378 ..      22     170 ..       4     179 .. 0.68
   2 ?   -0.2   0.1      0.15        88     354     395 ..     455     497 ..     400     569 .. 0.69

  Alignments for each domain:
  == domain 1    score: 16.4 bits;  conditional E-value: 1.4e-06
   TIGR00883 225 lllvlglviatsvlfYllttylasYlkktaklglsaesa.llvlllalillllvipls...gllsdriGrrkvlilltvlaallavpllsallesssillvlllllllalivamytgvmaallaelfptevRytgvslaynlasviggglapviaaaL 378
                 l++ l+    + +++ ++   +  Y+++   +g++++++  +v +l ++ +ll +p s   g +sd +Gr++vl++ +++++  +     +l  sss+ ++l++ +l+  +++  ++v+ a+l ++   + R++++sl   + sv++g +ap+ +  L
  MMETSP1137-20121227|2097_1  22 LIVSLFA-CFGDAVVAIMLYPMLPYMVQD--FGIPRDQVgFYVGMLGTCYNLLQVPASafwGKMSDIFGRKRVLMTGQLTLMTAT----ACLGLSSSFGAALAARCLAG-ALNGNNAVTRAALRDITLPSQRAKAFSLFGLMLSVAFG-IAPLFGSFL 170
                 3333333.334445556666688899999..568776642778899999999988865222789********7666555443333....34444466666666665555.5569999*********99999*****998888888887.888777666 PP

  == domain 2    score: -0.2 bits;  conditional E-value: 0.15
   TIGR00883 354 tgvslaynlasvigggla.pviaaaLvaltgdkaavgiyllll 395
                  g+sl+ + a++i+g++a p i   L a+    a+++i+l+++
  MMETSP1137-20121227|2097_1 455 LGLSLTPAAAGLIAGSCAfPWIDKRLGATGSFVASCAIFLAVN 497
                 4555555666666665554555555555555455555555444 PP

>> TIGR01299  synapt_SV2: synaptic vesicle protein SV2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   0.9   0.00017     0.098     166     267 ..      19     124 ..      11     156 .. 0.76

  Alignments for each domain:
  == domain 1    score: 8.3 bits;  conditional E-value: 0.00017
   TIGR01299 166 walyfvlglalmadgvevfvvgfvlpsaekdlclsdsnk....gllglivylgmmvgaflwggladklgrkqsllis.lsvnsvfaflssfvqgygtfllcrllsgv 267
                 w   +v  +a + d v  +++  +lp   +d+ ++  +     g+lg+   l  +  + +wg ++d  grk+ l+   l++ +  a l  +   +g  l +r l+g 
  MMETSP1137-20121227|2097_1  19 WVPLIVSLFACFGDAVVAIMLYPMLPYMVQDFGIPRDQVgfyvGMLGTCYNLLQVPASAFWGKMSDIFGRKRVLMTGqLTLMTATACL-GLSSSFGAALAARCLAGA 124
                 6666677788889999999999999*********9887522226899888888888889*************9986424444444443.344556777777777664 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (621 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       145  (0.0353486); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.49u 0.15s 00:00:00.64 Elapsed: 00:00:00.65
# Mc/sec: 1261.00
//
Query:       MMETSP1137-20121227|2099_1  [L=240]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.8e-05   22.0   0.0    2.8e-05   21.4   0.0    1.3  1  TIGR03516 ppisom_GldI: peptidyl-prolyl isomerase, gliding motility-associated


Domain annotation for each model (and alignments):
>> TIGR03516  ppisom_GldI: peptidyl-prolyl isomerase, gliding motility-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   0.0   6.8e-09   2.8e-05      75     156 ..     141     221 ..     121     239 .. 0.77

  Alignments for each domain:
  == domain 1    score: 21.4 bits;  conditional E-value: 6.8e-09
   TIGR03516  75 ykkkdttetktpetgDlvsfeyeikaldgdviyskeelgpktykvdqedlisGlrdglklmkegeevtfllPsykayGyyGd 156
                 y++  ++ +  p  +  v+ +y+   l + +i+       +  +    ++i+G ++gl++mk g ++++ +Ps  ayG  G 
  MMETSP1137-20121227|2099_1 141 YEEVREGTGAQPTADQKVTAHYTGT-LADGTIFDSSVARGEPLTFPLGGVIKGWQEGLQMMKVGGKAVLTIPSDLAYGPNGT 221
                 6677777777788888888888754.444455554444444455555789****************************8875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (240 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        86  (0.0209654); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.21u 0.15s 00:00:00.36 Elapsed: 00:00:00.40
# Mc/sec: 791.93
//
Query:       MMETSP1137-20121227|2100_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        60  (0.014627); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.28
# Mc/sec: 232.12
//
Query:       MMETSP1137-20121227|2101_1  [L=455]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (455 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       166  (0.0404681); expected 82.0 (0.02)
Passed bias filter:                      113  (0.0275475); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.16s 00:00:00.49 Elapsed: 00:00:00.48
# Mc/sec: 1251.15
//
Query:       MMETSP1137-20121227|2102_1  [L=196]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (196 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       143  (0.034861); expected 82.0 (0.02)
Passed bias filter:                      130  (0.0316919); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.17s 00:00:00.36 Elapsed: 00:00:00.49
# Mc/sec: 527.96
//
Query:       MMETSP1137-20121227|2104_1  [L=176]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (176 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        52  (0.0126767); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.13s 00:00:00.30 Elapsed: 00:00:00.34
# Mc/sec: 683.24
//
Query:       MMETSP1137-20121227|2105_1  [L=271]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (271 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        51  (0.012433); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.14s 00:00:00.36 Elapsed: 00:00:00.32
# Mc/sec: 1117.78
//
Query:       MMETSP1137-20121227|2107_1  [L=582]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.9e-07   26.4  53.0    0.00012   17.7  13.8    2.2  2  TIGR02169 SMC_prok_A: chromosome segregation protein SMC
    8.6e-07   24.9  56.6    2.4e-05   20.1  13.2    2.4  2  TIGR02168 SMC_prok_B: chromosome segregation protein SMC


Domain annotation for each model (and alignments):
>> TIGR02169  SMC_prok_A: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7  13.8   5.9e-08   0.00012     673     897 ..      95     327 ..      81     336 .. 0.83
   2 !   12.2  18.6   2.8e-06    0.0057     316     516 ..     342     546 ..     328     565 .. 0.78

  Alignments for each domain:
  == domain 1    score: 17.7 bits;  conditional E-value: 5.9e-08
   TIGR02169 673 ekeklerlrerleeLereleslqselrriekrldelsskls..daekkieeiekeleqleeeeeklkerleeleeklseleeeleekkeelkeleaeieeleeklaklkealedleaelseekieeieeelekleeevsriearleeieaelnklelekelleeei......qelqeeieeleeqkkeiekeieelkakleeleeeleeleaavreLeeelkdLkkereelea 897
                 + e++++ +   ++Le + e+l+ e+r ++ +l +++  l+  + +k+ ++i +e  ql + ++++++r++ + ++  ++e +    +++ +e++ ++++   +l++   +l++ +++ls ++++++++el+   e ++++e++++  e++ +  ++++el + e+      +el   +  + eq++++ ++++ ++a+++e e++++e++ a+r+ +++l+ Lk+  + ++ 
  MMETSP1137-20121227|2107_1  95 QIEQSQKDNSSYGQLEXKYEALTTEMRDLQGKLADYNLMLDrtRVNKEAGDIGQECAQLMHVNAEERNRVDGVFNQRMSVEAQGRXXQQHHEEMARRLDSVDPALKERFLKLQEEQRNLSVHELPRMHAELHFFSERLAEMEQAVSRDEQRNQIYRFKEELYRLERhhselsNELDGPQLSIPEQRDMLLQKVKGDNAEIAEAEKKVAETQEALRKGRAHLASLKSGGDSADD 327
                 456666667788899999999999999999999988776651156899999**********************9999999999999************************************************************99999998888887754443000000344445668899********************************99999999987666654 PP

  == domain 2    score: 12.2 bits;  conditional E-value: 2.8e-06
   TIGR02169 316 eeledaeerlakaeaeidklkeeieelereieeekkereklkeelkelkeeleelraeleevdkeaaelreelkelkekleklkeelnelkreldrlleelkrleeelaelkaele...rieekiaeleeeleelaeeikkaeqkleqlkedlekaekelrklkeel..eklekelselerelaeleaqakaseeesreskaveev 516
                 e  e +++  ++  ae +k+++   e+ r +++  ++ e l+++ + + ++l e++a+l+ ++ +++++ + ++ l ++l+k k el+++++  ++   e k+l e++a +k el+   ++++ + e  +++++l ++i+ a++ +   ke+ ++++k+++++k++l  +++   l e e+++ +le +  +++e+  ++k +e++
  MMETSP1137-20121227|2107_1 342 EMSELIDNFDEQKAAEEKKTAAAQSEIVRLLQSISRKTEFLENANNMSTQKLTEIKADLDFKQIQMDNSANTSSRLAQELDKRKLELEKINTLDSKINTEIKQLXEKMATMKSELKvfiDLKALKSECTSTRDDLTAQISGAKGAATAQKEQSAALKKKYEETKAKLsqDAVAVALDEFEQKMRHLEQTVFVLSEYI-DTKGAETL 546
                 33333455556666677777777788888888888888999999999999999999999999999999999999999999999999999998888999999999999999999998333467778899999999999999999999999999999999999999987224688899999999999999887777766.66666555 PP

>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1  13.2   1.2e-08   2.4e-05     711     973 ..      49     309 ..      34     321 .. 0.77
   2 !   10.2  13.4   1.1e-05     0.023     688     847 ..     379     536 ..     374     550 .. 0.56

  Alignments for each domain:
  == domain 1    score: 20.1 bits;  conditional E-value: 1.2e-08
   TIGR02168 711 eleeeleklrkeleelerklselkkelerlekeveqleerlaqlekeleeleeereeleeeleeaeeelkeaeeeieeleaeieqlkeelkalrealseleaeltelkeeaaekeerleslekeiaalekeleeleeqieeleeeiesleaeieeleeeleeleeeleellkekasleealaelreeleelseelrelekkvkelereleelreklaqlelrleeleveiaelqerlseeyeleleeaeeleekveeeeeeae 973
                   ++ l+ l+++ +  +r++++ +  l+ l++++ ++ +++  l+ ++e+ ++  +++ + le + e+l +  ++++   a+++ + +++  ++ea +  ++ ++  + +a+ +++r++ + ++  ++e + +  ++ +ee++ ++ s+  +++e   +l+e +++l  ++  ++++e +  + r +  e++ + +e ++++ + ++el +l+ ++++l+++l++ ++ i e++++l ++++ +  e++e e+kv e +e+++
  MMETSP1137-20121227|2107_1  49 VTQQGLSGLKTAGQGPKRQIQDNSYFLQILRAKSTEIMKEIGMLKGQIEQSQKDNSSYGQ-LEXKYEALTTEMRDLQGKLADYNLMLDRTRVNKEAGDIGQECAQLMHVNAE-ERNRVDGVFNQRMSVEAQGRXXQQHHEEMARRLDSVDPALKERFLKLQEEQRNLSVHELPRMHAELHFFSERLAEMEQAVSRDEQRNQIYRFKEELYRLERHHSELSNELDGPQLSIPEQRDMLLQKVKGDNAEIAEAEKKVAETQEALR 309
                 55677888999999999*************************999999999888887776.444444444444445555555555666666777777777777777777776.699******************************************999999999999999966666666666665555666677777888999********************************9999888888888775333333333 PP

  == domain 2    score: 10.2 bits;  conditional E-value: 1.1e-05
   TIGR02168 688 ieeleekiaelekelkelekeleeleeeleklrkeleelerklselkkelerlekeveqleerlaqlekeleeleeereeleeele...eaeeelkeaeeeieeleaeieqlkeelkalrealseleaeltelkeeaaeke..erleslekeiaalekeleelee 847
                 +e le       ++ ++  ++l+e++ +l+ ++ + +++ + +s+l +el++ + e e+++   ++++ e+++l e++++ ++el+   ++++ ++e+ +++++l+a+i  +k +++a++e+ ++l+++++e+k+++++ +   +l++ e+++++le+++  l+e
  MMETSP1137-20121227|2107_1 379 TEFLE-------NANNMSTQKLTEIKADLDFKQIQMDNSANTSSRLAQELDKRKLELEKINTLDSKINTEIKQLXEKMATMKSELKvfiDLKALKSECTSTRDDLTAQISGAKGAATAQKEQSAALKKKYEETKAKLSQDAvaVALDEFEQKMRHLEQTVFVLSE 536
                 33344.......444444444444444444444444444445555555555555555554444444445555554444444444432215666778888889999999999999999999999999999998888887643003344445555555554444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (582 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       433  (0.105558); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.58u 0.18s 00:00:00.76 Elapsed: 00:00:00.57
# Mc/sec: 1324.44
//
Query:       MMETSP1137-20121227|2108_1  [L=683]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (683 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        98  (0.0238908); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.19s 00:00:00.64 Elapsed: 00:00:00.38
# Mc/sec: 2372.33
//
Query:       MMETSP1137-20121227|2109_1  [L=182]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (182 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        87  (0.0212092); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.13s 00:00:00.31 Elapsed: 00:00:00.27
# Mc/sec: 889.70
//
Query:       MMETSP1137-20121227|2110_1  [L=113]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (113 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        65  (0.0158459); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.15s 00:00:00.30 Elapsed: 00:00:00.33
# Mc/sec: 451.96
//
Query:       MMETSP1137-20121227|2111_1  [L=91]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (91 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        32  (0.00780107); expected 82.0 (0.02)
Passed bias filter:                       28  (0.00682594); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.30
# Mc/sec: 400.37
//
Query:       MMETSP1137-20121227|2112_1  [L=382]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (382 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       144  (0.0351048); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.17s 00:00:00.49 Elapsed: 00:00:00.54
# Mc/sec: 933.70
//
Query:       MMETSP1137-20121227|2113_1  [L=333]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (333 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        38  (0.00926377); expected 82.0 (0.02)
Passed bias filter:                       36  (0.00877621); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.09s 00:00:00.34 Elapsed: 00:00:00.33
# Mc/sec: 1331.89
//
Query:       MMETSP1137-20121227|2114_1  [L=140]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (140 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        44  (0.0107265); expected 82.0 (0.02)
Passed bias filter:                       37  (0.00901999); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.11s 00:00:00.27 Elapsed: 00:00:00.27
# Mc/sec: 684.39
//
Query:       MMETSP1137-20121227|2116_1  [L=611]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      2e-14   50.2   0.1    2.7e-14   49.8   0.1    1.1  1  TIGR03903 TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
     0.0073   13.6   0.0      0.015   12.6   0.0    1.4  1  TIGR03724 arch_bud32: Kae1-associated kinase Bud32


Domain annotation for each model (and alignments):
>> TIGR03903  TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.8   0.1   1.3e-17   2.7e-14       8     161 ..      91     235 ..      86     278 .. 0.80

  Alignments for each domain:
  == domain 1    score: 49.8 bits;  conditional E-value: 1.3e-17
   TIGR03903   8 ikllRedaaeeerlvaRFrReialCarLshPnivaLlDsGeaedgllFavFeyveGrtlrevLaadGaLpaaetgrLmlqvLDalaaahdaGvvhRDLkPqnimvsaadveshakvLDFGigaLl.pgvedadeatltrttevlGsPaYaaPeqL 161
                 +k l + + +e++l +  +  +++ +  + P++v+Ll + e  +   F   e+ +   l +++   G L+ a+   L +q L a+ + hd Gv hRD+k +n++++  +     kv DFG++a   pg+         +   + G+P YaaPe  
  MMETSP1137-20121227|2116_1  91 VKRLCKVSLNEQQLQREIQAHMQVQQGSRSPHVVELLAQYEKAE-AHFLFLEFCPLGDLLDLVIDCGGLSEAQSRTLFTQLLSAMRHCHDFGVAHRDVKLDNLLMASCE---RLKVCDFGLAACTePGASG------CLCAGFAGTPRYAAPEGY 235
                 555555555666666667777888888899*******9876444.44555899**9999999999***************************************99875...579******9975267666......5667799********965 PP

>> TIGR03724  arch_bud32: Kae1-associated kinase Bud32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.6   0.0   7.1e-06     0.015      94     139 ..     165     211 ..     153     215 .. 0.84

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 7.1e-06
   TIGR03724  94 ellkevGelvgklHkagivhgDlttsNiiv.kddklyliDfGLgkks 139
                  l++++  ++ ++H+ g++h D+   N+++ + ++l + DfGL+  +
  MMETSP1137-20121227|2116_1 165 TLFTQLLSAMRHCHDFGVAHRDVKLDNLLMaSCERLKVCDFGLAACT 211
                 6667777788899***************9955799********9866 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (611 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        97  (0.023647); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.17s 00:00:00.59 Elapsed: 00:00:00.49
# Mc/sec: 1645.82
//
Query:       MMETSP1137-20121227|2117_1  [L=374]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      1e-10   37.9  40.2      1e-10   37.9  27.8    1.7  1  TIGR02168 SMC_prok_B: chromosome segregation protein SMC
    3.6e-09   32.7  45.4    3.6e-09   32.7  31.4    1.9  2  TIGR02169 SMC_prok_A: chromosome segregation protein SMC
  ------ inclusion threshold ------
        4.6    4.8  16.8      0.026   12.1   0.3    3.7  3  TIGR00636 PduO_Nterm: ATP:cob(I)alamin adenosyltransferase


Domain annotation for each model (and alignments):
>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.9  27.8   7.5e-14     1e-10     692     984 ..      30     330 ..      21     331 .. 0.82

  Alignments for each domain:
  == domain 1    score: 37.9 bits;  conditional E-value: 7.5e-14
   TIGR02168 692 eekiaelekelkelekeleeleeeleklrkeleelerklselkkeler.....lekeveqleerlaqlekeleeleeereeleeeleeaeeelkeaeeeieeleaeieqlkeelkalrealseleaeltelkeeaaekeerleslekeiaalekeleeleeqieeleeeiesleaeieeleeeleeleeeleellkekasleealaelreeleelseelrelekkvkelereleelreklaqlelrleeleveiaelqerlseeyeleleeaeelee..k.veeeeeeaeeelkrleekik 984
                 ee  + +++  +e+e +l+e e  l+k r+e+e l ++++e++k+le+     +e+  e++e++l+++ ++  +l+ e    +++ + +++ ++ +++ei+ l ++ ++l e +++l+++++ l++e++e +e++ +ke+r+ +l+k+ ++lek    l+ +i+el+++ie  e ei e++e+++e+ +ele+  k+ ++le  +++lr + + +++e+   ++k+++++ +++ l ++l++  ++++  ++  ++++ + ++++  +  +++ +++  +  + ++e +e+++++l++k++
  MMETSP1137-20121227|2117_1  30 EEHERTMQEVTEEYEGRLQEDEAVLDKERAEKEGLVQEFDETRKQLEEdvdreIEELKEKYESKLSSEXEAALRLKGENGIMRKKFTALQKDIEDQKDEINGLFQSKKALHEHIASLEKDIAGLKKEIRERDETIGDKEKRIYDLKKKNQELEKFKFVLDYKIKELKKQIEPREVEIMEMKEQIKEMDQELERYHKNNSALELTISNLRLKNDGMQREILGQRTKLSDADSKVQGLCTELHDCVQHIQDPKLLKESIKRMYQKHVTETVSTHAMENDiaAeYTRQREYLEKSVESLKRKLN 330
                 56667777777888888888888888888888888888888888886421111334445555566666667777788888888899999999999999999999999999999999999999999999999999999999999999999999999999999*************************************9***********************************************999999888887777777666665555554432246677788*********9997 PP

>> TIGR02169  SMC_prok_A: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8  18.0   6.6e-07    0.0009     308     462 ..      30     182 ..      19     185 .. 0.79
   2 !   32.7  31.4   2.7e-12   3.6e-09     166     463 ..      65     366 ..      65     373 .. 0.91

  Alignments for each domain:
  == domain 1    score: 14.8 bits;  conditional E-value: 6.6e-07
   TIGR02169 308 eraiaekeeeledaeerlakaeaeidklkeeieelereieeekker.eklkeelkelkeeleelraeleevdkeaaelreelkelkekleklkeelnelkreldrlleelkrleeelaelkaelerieekiaeleeeleelaeeikkaeqkleqlk 462
                 e++ +  +e  e+ e rl+++ea +dk ++e+e l +e  e +k+  e +  e++elke++e    +l ++ ++a +l+ e   +++k  +l++ +++ k e++ l + +k l+e++a l++++++++++i e +e+  +++++i   ++k ++l+
  MMETSP1137-20121227|2117_1  30 EEHERTMQEVTEEYEGRLQEDEAVLDKERAEKEGLVQEFDETRKQLeEDVDREIEELKEKYES---KLSSEXEAALRLKGENGIMRKKFTALQKDIEDQKDEINGLFQSKKALHEHIASLEKDIAGLKKEIRERDETIGDKEKRIYDLKKKNQELE 182
                 455566667778889999999999********9999999888777515688888888887765...56666667777777777777777777777777777777888999999***********************99999999887777776665 PP

  == domain 2    score: 32.7 bits;  conditional E-value: 2.7e-12
   TIGR02169 166 vaeFdekkekaleeLe.eveeriervelvieevrqqlerLekere.kaerYkeLkkekrel..eltlllkelealekqkekiekelaeleeelekleeeieelekeleeiekkleelnkkieklgeeeqlavkekleelkaeiekleraiaekeeeledaeerlakaeaeidklkeeieelereieeekkereklkeelkelkeeleelraeleevdkeaaelreelkelkekleklkeelnelkreldrlleelkrleee.laelkaelerieekiaeleeeleelaeeikkaeqkleqlke 463
                 v+eFde  ++  e+++ e+ee  e+ e+ ++   +   rL+ e      ++ +L+k  ++   e+  l ++++al++ ++ +ek++a l++e+ + +e i ++ek++  ++kk +el +k +   + ++ ++k+++e  ++ei +++++i+e  +ele+  +++  +e  i++l+ + + ++rei  ++ +     ++++ l +el++ ++++++ +   + +++  ++  ++  +++   n++  e  r  e l++  e   ++l++++e  +++   + +e  +l +ei++ +++++ +k 
  MMETSP1137-20121227|2117_1  65 VQEFDETRKQLEEDVDrEIEELKEKYESKLSSEXEAALRLKGENGiMRKKFTALQKDIEDQkdEINGLFQSKKALHEHIASLEKDIAGLKKEIRERDETIGDKEKRIYDLKKKNQEL-EKFKFVLDYKIKELKKQIEPREVEIMEMKEQIKEMDQELERYHKNNSALELTISNLRLKNDGMQREILGQRTKLSDADSKVQGLCTELHDCVQHIQDPKLLKESIKRMYQKHVTETVSTHAMENDIAAEYTRQREYLEKSVESlKRKLNKNMELHRSDNMRMMQENVSLIKEINELRREIKGMKM 366
                 79*************846999999******************99735789*****98776511667799****************************************99998777.57899999*****************************************************************************************9999999999999999999999999999999*9999999888765515689999999999999***************9999987764 PP

>> TIGR00636  PduO_Nterm: ATP:cob(I)alamin adenosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.3   1.9e-05     0.026      46      98 ..     107     159 ..      92     165 .. 0.89
   2 ?    0.8   1.9     0.055        76      54     100 ..     181     231 ..     157     235 .. 0.57
   3 ?    0.6   0.2     0.066        90      46      95 ..     314     328 ..     242     366 .. 0.55

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 1.9e-05
   TIGR00636  46 keeelkeelekiqndlfdlgadlatksekkkiteekvkfleeridkyreelee 98 
                 ++  ++++++++q+d+ d   ++ + ++ kk  +e+++ le+ i+ +++e+ e
  MMETSP1137-20121227|2117_1 107 ENGIMRKKFTALQKDIEDQKDEINGLFQSKKALHEHIASLEKDIAGLKKEIRE 159
                 567899*****************************************999876 PP

  == domain 2    score: 0.8 bits;  conditional E-value: 0.055
   TIGR00636  54 lekiqndlfdlgadlatksekk....kiteekvkfleeridkyreeleelk 100
                 lek +  l    ++l  ++e +    +  +e++k +++++++y+++ ++l+
  MMETSP1137-20121227|2117_1 181 LEKFKFVLDYKIKELKKQIEPReveiMEMKEQIKEMDQELERYHKNNSALE 231
                 333333332223344444444433334467888899999999988888776 PP

  == domain 3    score: 0.6 bits;  conditional E-value: 0.066
   TIGR00636  46 keeelkeelekiqndlfdlgadlatksekkkiteekvkfleeridkyree 95 
                 +                                    ++le+ +++++++
  MMETSP1137-20121227|2117_1 314 QR-----------------------------------EYLEKSVESLKRK 328
                 22...................................3333333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (374 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       537  (0.130912); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.55u 0.16s 00:00:00.71 Elapsed: 00:00:00.71
# Mc/sec: 695.27
//
Query:       MMETSP1137-20121227|2118_1  [L=624]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   4.3e-229  760.8   0.0     5e-229  760.6   0.0    1.0  1  TIGR01235 pyruv_carbox: pyruvate carboxylase
     3e-150  498.8   0.1   3.8e-150  498.5   0.1    1.0  1  TIGR00514 accC: acetyl-CoA carboxylase, biotin carboxylase subunit
   5.5e-139  462.7   0.4   6.8e-139  462.4   0.3    1.0  1  TIGR02712 urea_carbox: urea carboxylase
    4.9e-17   58.7   0.0    6.8e-17   58.2   0.0    1.1  1  TIGR01369 CPSaseII_lrg: carbamoyl-phosphate synthase, large subunit
    2.2e-16   57.6   0.0    3.8e-16   56.8   0.0    1.4  1  TIGR01205 D_ala_D_alaTIGR: D-alanine--D-alanine ligase
    6.8e-10   36.1   0.1    1.1e-09   35.4   0.1    1.2  1  TIGR00877 purD: phosphoribosylamine--glycine ligase
    1.1e-09   35.9   0.0    1.8e-09   35.2   0.0    1.3  1  TIGR01161 purK: phosphoribosylaminoimidazole carboxylase, ATPase subunit
    3.8e-09   33.7   0.3    6.3e-09   33.0   0.2    1.3  1  TIGR01142 purT: phosphoribosylglycinamide formyltransferase 2
    4.4e-08   30.4   0.1    1.8e-07   28.4   0.0    2.0  2  TIGR02144 LysX_arch: lysine biosynthesis enzyme LysX
    2.8e-07   28.0   0.0    2.4e-06   24.9   0.0    2.1  1  TIGR00768 rimK_fam: alpha-L-glutamate ligases, RimK family
    1.6e-05   21.4   1.4    5.9e-05   19.5   0.1    2.0  2  TIGR01108 oadA: oxaloacetate decarboxylase alpha subunit
    0.00011   18.1   0.1    0.00015   17.7   0.0    1.1  1  TIGR02068 cya_phycin_syn: cyanophycin synthetase
  ------ inclusion threshold ------
      0.015   11.8   0.0      0.024   11.2   0.0    1.2  1  TIGR03909 pyrrolys_PylC: pyrrolysine biosynthesis protein PylC
       0.02   11.7   0.2      0.052   10.3   0.0    1.7  2  TIGR02291 rimK_rel_E_lig: alpha-L-glutamate ligase homolog


Domain annotation for each model (and alignments):
>> TIGR01235  pyruv_carbox: pyruvate carboxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  760.6   0.0  1.7e-231    5e-229       1     560 [.      47     623 ..      47     624 .] 0.92

  Alignments for each domain:
  == domain 1    score: 760.6 bits;  conditional E-value: 1.7e-231
   TIGR01235   1 kvlvanrgeiairvfraanelgirtvavyseedklslhrqkadeaylvGeg.gqlaPveaylsideiirvakknkvdaihPGyGflsensefadkvekaGivfiGPkaevldqlGdkvaarelaikagvPvvPgtdgpvetleevldfakaiGyPvilkaayGGGGrGmrvvrseeevadaferakseakaafGndevyveklierpkhievqllgdkaGnvvhlferdcsvqrrhqkvvevaPakslsrevrdklaeaavklakevnyinaGtveflvdedtkfyfievnpriqvehtvteeitGidivkaqikvaeGaslpskklglpeqediktkGyaiqcrvttedPakdflPdtGrievyrsaeGfGvrldggnayaGaiispyydsllvkvsasastleeaaakmvralrefrirGvktnipfleavlenekflegsydtsfidetPelfqlvksk.........d.....ratklltyladvtvnGsielkkklkpleskprvvkleadqspv......krGtkqildekGpeefakavreqksvlltdttfrdahqsllatrvrthdlakiap 560
                 k++ anr+eia r++raa+el+++tv +y  ed+ s hr+ ad+++++ +  +  + + ayl+  +i+++ak+++v+aihPGyGflse++efa+ +e+aGi+f+GP+ e l+++ dk +ar +aika+vPvvPgtd pv+t+e+++ f++++G+Pvi+kaa+GGGG+Gmrvvrs+ee+   f+ a+seakaafG+++v++e+++++p+hievq++gd +Gnvvhl+erdcsvqrrhqkvve+aPa +l+ e+r++l e++ +l  ++ny+naGtveflvd+++++yfievnpriqvehtvtee+tGidi +aq+++a+Gasl+  ++gl  qe+i+ +G a+qcrvtte+ +++f+PdtG i vyr + GfG+r dg   y+G  ++p+ydsllvk +a ++++ee++++m ral+e rirGvktnipfl++vl+++ f +g+ +t f de+P l+ ++ +k         d     ra++l++y+a+++vnG++      k   s+++ +  + + s++        G++++l + Gp+++akavre+k++lltdtt+rdahqsllatr+rt +l++ ap
  MMETSP1137-20121227|2118_1  47 KIMAANRAEIAQRIMRAATELNMQTVGIYGYEDRYSQHRWGADQSFMLEKKxPGDSAIAAYLDAAQIVKIAKEHGVEAIHPGYGFLSESPEFAQLCEDAGITFVGPTIENLKTFADKTTARVAAIKADVPVVPGTDEPVTTVEAAQAFVDEYGLPVIIKAAMGGGGKGMRVVRSKEELPALFTTASSEAKAAFGDGSVFLERFLDKPRHIEVQIIGDGKGNVVHLWERDCSVQRRHQKVVEIAPAWNLPTELRKQLHEDSKRLMSAANYKNAGTVEFLVDQEGRHYFIEVNPRIQVEHTVTEEVTGIDIPQAQLRIAAGASLE--EIGLV-QEHIHARGVALQCRVTTENAERNFQPDTGTISVYRHSAGFGMRHDG-IGYSGMKVTPFYDSLLVKYTARGASWEEVVRRMRRALQEARIRGVKTNIPFLLNVLTHPEFEKGVVTTAFXDENPSLLAISGKKwqfaspyqaDqdkvyRAEQLMRYIANLAVNGHPASLGAAKDKLSNSHKPLTPPQISSEllqmppGAGWRDVLLKDGPAGYAKAVREHKGLLLTDTTWRDAHQSLLATRMRTQELLTAAP 623
                 799*********************************************875156999**************************************************************************************************************************************************************************************************************************************************************************..*****.*******************************************996.68**************************************************************************975432221111111111224559***************88654444444444433333333333334445589************************************************99886 PP

>> TIGR00514  accC: acetyl-CoA carboxylase, biotin carboxylase subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  498.5   0.1  1.3e-152  3.8e-150       2     443 ..      45     493 ..      44     498 .. 0.97

  Alignments for each domain:
  == domain 1    score: 498.5 bits;  conditional E-value: 1.3e-152
   TIGR00514   2 ldkilianrGeialrilrackelGiktvavystadkdalhvkladeavciGeaa....saksylnipniiaaaeitgadaihpGyGflsenadfaelveesgltfiGpsaeairlmGdkvsaketmkkagvpvvpGsdGlvedveeaveiakeiGypviikataGGGGrGlrvvreedelvkslkaakaeakaafnndgvylekfienprhveiqvladkyGnvvylgerdcsiqrrkqklleeapspaltselrkkiGeaavkaaksigytgaGtveflldkegefyflemntriqvehpvtemvtgvdlikeqirvakG...eklslkqedvklkGhaiecrinaedpsknflpspGriksylppgGlgvrvdsavysgyavppyydsliaklivygktreeaiarmkralkeliieGikttidfhkliledekfkkgevdikylek 443
                 ++ki+ anr eia ri+ra+ el ++tv +y   d+  +h   ad+++ + ++     +  +yl+ ++i+ +a+  g++aihpGyGflse  +fa+l+e++g+tf+Gp+ e +++  dk++a+ ++ ka+vpvvpG+d  v +ve a++  +e G pviika+ GGGG+G+rvvr+++el  ++++a +eakaaf++ +v+le+f+++prh+e+q+++d  Gnvv+l erdcs+qrr+qk++e ap+  l +elrk++ e + ++  +++y+ aGtvefl+d+eg++yf+e+n riqveh+vte+vtg+d+ ++q+r+a+G   e++ l qe+++ +G a++cr+ +e+ ++nf+p  G i+ y  ++G+g+r d+  ysg +v p+ydsl+ k  + g + ee ++rm+ral+e  i G+kt+i+f   +l +++f+kg v +++ ++
  MMETSP1137-20121227|2118_1  45 FKKIMAANRAEIAQRIMRAATELNMQTVGIYGYEDRYSQHRWGADQSFMLEKKXpgdsAIAAYLDAAQIVKIAKEHGVEAIHPGYGFLSESPEFAQLCEDAGITFVGPTIENLKTFADKTTARVAAIKADVPVVPGTDEPVTTVEAAQAFVDEYGLPVIIKAAMGGGGKGMRVVRSKEELPALFTTASSEAKAAFGDGSVFLERFLDKPRHIEVQIIGDGKGNVVHLWERDCSVQRRHQKVVEIAPAWNLPTELRKQLHEDSKRLMSAANYKNAGTVEFLVDQEGRHYFIEVNPRIQVEHTVTEEVTGIDIPQAQLRIAAGaslEEIGLVQEHIHARGVALQCRVTTENAERNFQPDTGTISVYRHSAGFGMRHDGIGYSGMKVTPFYDSLLVKYTARGASWEEVVRRMRRALQEARIRGVKTNIPFLLNVLTHPEFEKGVVTTAFXDE 493
                 68***********************************************9887512214567*******************************************************************************************************************************************************************************************************************************************************************333345699*******************************************************************************************************************9886 PP

>> TIGR02712  urea_carbox: urea carboxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  462.4   0.3  2.3e-141  6.8e-139       1     440 [.      45     492 ..      45     498 .. 0.97

  Alignments for each domain:
  == domain 1    score: 462.4 bits;  conditional E-value: 2.3e-141
   TIGR02712   1 fkkvlianrGeiavriirtlkklgirsvavysdadkasqhvkdadeavalge....ataaesylkidkileiakktgaeaiiPGyGflsenaafaeaceaagivfvGPtpeqlrklGlkhtarelaeaagvPllpGtg.llesleealeaaeeigyPvmlkstaGGGGiGlqkvdsaeeleeafesvkrlgesffsdagvflekfvekarhvevqilGdgkGkvvalgerdCslqrrnqkvveetPaPnlpeevrekllkaaeklaeavnyrsaGtvefiydekrdefyflevntrlqvehpvteavtgldlvewmvrlaageapdldelkve..kprGaaiearvyaedPakdfqPspGlltevkfPed..vrvdtwvekGtevsaeydPmlakiivhgkdreealeklkkaleetkvaGivtnldylksivssevfrkakvstrlle 440
                 fkk++ anr eia ri+r++ +l++++v +y   d++sqh   ad++ +l++    ++a  +yl++ +i++iak+ g+eai+PGyGflse+ +fa+ ce+agi+fvGPt e+l+++  k tar  a +a+vP++pGt+  ++++e+a +  +e g+Pv++k++ GGGG G++ v+s+eel + f++    +++ f+d  vfle+f++k rh+evqi+GdgkG+vv l erdCs+qrr+qkvve +Pa nlp+e+r++l++ +++l++a ny+ aGtvef+ d+ +++ yf+evn r+qveh vte+vtg+d+ +  +r+aag++ ++  l +e  ++rG+a++ rv +e+  ++fqP +G+++  +      +r d+    G++v+++yd +l k  + g++ ee ++++++al+e+++ G++tn+ +l +++++ +f+k+ v+t++ +
  MMETSP1137-20121227|2118_1  45 FKKIMAANRAEIAQRIMRAATELNMQTVGIYGYEDRYSQHRWGADQSFMLEKkxpgDSAIAAYLDAAQIVKIAKEHGVEAIHPGYGFLSESPEFAQLCEDAGITFVGPTIENLKTFADKTTARVAAIKADVPVVPGTDePVTTVEAAQAFVDEYGLPVIIKAAMGGGGKGMRVVRSKEELPALFTTASSEAKAAFGDGSVFLERFLDKPRHIEVQIIGDGKGNVVHLWERDCSVQRRHQKVVEIAPAWNLPTELRKQLHEDSKRLMSAANYKNAGTVEFLVDQ-EGRHYFIEVNPRIQVEHTVTEEVTGIDIPQAQLRIAAGASLEEIGLVQEhiHARGVALQCRVTTENAERNFQPDTGTISVYRHSAGfgMRHDGIGYSGMKVTPFYDSLLVKYTARGASWEEVVRRMRRALQEARIRGVKTNIPFLLNVLTHPEFEKGVVTTAFXD 492
                 99************************************************984444678899***************************************************************************62699*******************************************************************************************************************************************97.5899**********************************999888777776789*************************99888876779************************************************************************9876 PP

>> TIGR01369  CPSaseII_lrg: carbamoyl-phosphate synthase, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.2   0.0   2.3e-19   6.8e-17     645     887 ..     138     385 ..     110     401 .. 0.84

  Alignments for each domain:
  == domain 1    score: 58.2 bits;  conditional E-value: 2.3e-19
   TIGR01369 645 lakeleeagvkilGtsaesidraEdRekFsklldelgikqp..kgkeatsveeakeiakeigyPvlvRpsyvlgGrameiveneeeleryleeavevsk....ekPvlidkyledavEvdvDavadgeevliagileHiEeaGvHsGDstlvlppqklseevkkkikeivkkiakelkvkGllniqfvvkd.eevyviEvnvRasRtvPfvskalgvplvklavkvllgkkleelekgvkkekksklvav 887
                 +a+  e+ag++ +G + e++ +  d++    +  + +++    + + +t+ve a+ +++e g+Pv+++++   gG++m++v+++eel + +++a++ +k    +  v ++++l++   ++v ++ dg+  +++           H    + + p+ +l +e+ k+++e +k++  + ++k    + f+v++ ++ y iEvn+R      +   ++g+++ +   ++ +g++lee +  v+++ +++ va+
  MMETSP1137-20121227|2118_1 138 FAQLCEDAGITFVGPTIENLKTFADKTTARVAAIKADVPVVpgTDEPVTTVEAAQAFVDEYGLPVIIKAAMGGGGKGMRVVRSKEELPALFTTASSEAKaafgDGSVFLERFLDKPRHIEVQIIGDGKGNVVHLWERDCSVQRRHQ-KVVEIAPAWNLPTELRKQLHEDSKRLMSAANYKNAGTVEFLVDQeGRHYFIEVNPRIQVEHTVTEEVTGIDIPQAQLRIAAGASLEEIGL-VQEHIHARGVAL 385
                 567778899999999999999999998766655555555541156789***************************************9999866655541111567********************99998887766666666665.5677899*********************************99987899**************************************9886.777777766665 PP

>> TIGR01205  D_ala_D_alaTIGR: D-alanine--D-alanine ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.8   0.0   1.3e-18   3.8e-16      78     285 ..     134     338 ..      56     339 .. 0.81

  Alignments for each domain:
  == domain 1    score: 56.8 bits;  conditional E-value: 1.3e-18
   TIGR01205  78 EDGtiqglLellgipyvGsgvlaSalsmdKlltKlllkalglpvadyavlerkeekseeaekekleklglpvivKpareGSSvGvskvkseeeleealeeafey......deevlveea.ikgrelevsvlekeealpiieiveekekedFydYeaKYldgsaelvipaelseeeeekikelalkaykalgcrglaRvDfflekegeiylnEiNt 285
                 E  + + l e +gi +vG+ ++   +  dK + +  + ++++pv++ +    +  ++ ea ++ +++ glpvi+K+a  G   G+ +v+s+eel + ++ a +       d +v++e++  k r +ev +++ + + ++++  e ++     +  ++  ++  e++   +l++e+ ++++e ++++++a + ++ + v+f++++eg+ y+ E+N+
  MMETSP1137-20121227|2118_1 134 ESPEFAQLCEDAGITFVGPTIENLKTFADKTTARVAAIKADVPVVPGT--D-EPVTTVEAAQAFVDEYGLPVIIKAAMGGGGKGMRVVRSKEELPALFTTASSEakaafgDGSVFLERFlDKPRHIEVQIIG-DGKGNVVHLWERDC-----S-VQRRHQKVVEIAPAWNLPTELRKQLHEDSKRLMSAANYKNAGTVEFLVDQEGRHYFIEVNP 338
                 666777888999**********************************66..3.333333445568899***************************9887665443122223889******6688*********.66588899998888.....2.3333444567777778********************************************8 PP

>> TIGR00877  purD: phosphoribosylamine--glycine ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.4   0.1   3.8e-12   1.1e-09      52     205 ..     109     265 ..      88     277 .. 0.78

  Alignments for each domain:
  == domain 1    score: 35.4 bits;  conditional E-value: 3.8e-12
   TIGR00877  52 dleevvefakkkkidlavigpEapLvlG..lvdaleeaGikvfGpkkeAaklEasKafakdllkkagip..taeyevftepeeakeyieekgapaivvkadgLaaGKgvivvkdeeealkaveeilek..kkfgeagekvviEefleG.eEvsllalvdgk 205
                 d +++v++ak+++++ +  g   +L++    ++  e+aGi+ +Gp+ e  k  a+K+ a+    ka++p    + e +t +e a+++++e+g p +++ka    +GKg  vv+++ee  +  + + ++   +fg+++  v +E fl+    + ++ + dgk
  MMETSP1137-20121227|2118_1 109 DAAQIVKIAKEHGVEAIHPGYG-FLSESpeFAQLCEDAGITFVGPTIENLKTFADKTTARVAAIKADVPvvPGTDEPVTTVEAAQAFVDEYGLP-VIIKAAMGGGGKGMRVVRSKEELPALFTTASSEakAAFGDGS--VFLERFLDKpRHIEVQIIGDGK 265
                 5789999999999998888865.4544323788899*********************************533356789***************9.999999889************977766666554004566666..******9851455566666665 PP

>> TIGR01161  purK: phosphoribosylaminoimidazole carboxylase, ATPase subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.2   0.0   6.1e-12   1.8e-09      86     266 ..     150     340 ..     100     371 .. 0.86

  Alignments for each domain:
  == domain 1    score: 35.2 bits;  conditional E-value: 6.1e-12
   TIGR01161  86 vapspealallqdkltqkqllqklglavpeflv.elkeeeelekaleelglpvvlKarkggYDGrGqfvikseeeleqal........kalgdkelivEefvkfekElsvivaRskeGeva.fyPvvenlqkdgilrlvvapa.alpeklqkkaeelarklveeldlvGvlavElFlledgelLvNElApRv 266
                 v p  e l++ +dk+t + +  k++++v + +   +++ e+ +++++e glpv++Ka  gg  G+G  v++s+eel+ +         +a+gd ++++E+f +  + + v ++ + +G+v+  +     +q+    ++ +apa +lp++l+k+ +e  ++l+ + ++    +vE+ + ++g+ +  E+ pR 
  MMETSP1137-20121227|2118_1 150 VGPTIENLKTFADKTTARVAAIKADVPVVPGTDePVTTVEAAQAFVDEYGLPVIIKAAMGG-GGKGMRVVRSKEELPALFttasseakAAFGDGSVFLERFLDKPRHIEVQIIGDGKGNVVhLWERDCSVQRRHQKVVEIAPAwNLPTELRKQLHEDSKRLMSAANYKNAGTVEFLVDQEGRHYFIEVNPRI 340
                 5688899*********************999987789999*****************9888.7***********99765411111111455666************************976267888889999999999****99************************************99999999996 PP

>> TIGR01142  purT: phosphoribosylglycinamide formyltransferase 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.0   0.2   2.1e-11   6.3e-09      81     303 ..     142     371 ..      94     398 .. 0.70

  Alignments for each domain:
  == domain 1    score: 33.0 bits;  conditional E-value: 2.1e-11
   TIGR01142  81 lekeg.yevvPnaratkltmnreglrrlaaeelglpt..akyefadsleeleeavekiGfPcvvkpvmsssGkGqsvvkgpediekaWeeakegarg..saerviveefidfdveitlltvravdg.vvefcaPiGhrqedg....dykesWq.PqelsekaleeakeiakrvvdaLGGlGlfGvelfvkgd.evifsevsprPhdtglvtlisqelsefelhvrailGlpidei 303
                  e++g ++v P+ +  k  +++   r +aa ++++p    + e ++++e  ++ v++ G+P+++k+ m+  GkG  vv+++e++++ + +a ++a++   ++ v  e f+d    i + ++   +g vv++ +    +q +     +   +W  P el ++  e++    kr+++a   +    ve++v ++ + +f ev pr +    vt     +   + ++r   G +++ei
  MMETSP1137-20121227|2118_1 142 CEDAGiTFVGPTIENLKTFADKTTAR-VAAIKADVPVvpGTDEPVTTVEAAQAFVDEYGLPVIIKAAMGGGGKGMRVVRSKEELPALFTTASSEAKAafGDGSVFLERFLDKPRHIEVQIIGDGKGnVVHLWERDCSVQRRHqkvvEIAPAWNlPTELRKQLHEDS----KRLMSAANYKNAGTVEFLVDQEgRHYFIEVNPRIQVEHTVTEEVTGIDIPQAQLRIAAGASLEEI 371
                 36667345558888888888887766.455555555511566889**********************************************977766226889********9999988888877766677765555555444000044455543555555555555....55555555555557999998764789999999999888888777777777777777767666655 PP

>> TIGR02144  LysX_arch: lysine biosynthesis enzyme LysX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0       1.4     4e+02     252     278 ..      41      67 ..      38      69 .. 0.87
   2 !   28.4   0.0   6.1e-10   1.8e-07      65     274 ..     139     362 ..     133     369 .. 0.76

  Alignments for each domain:
  == domain 1    score: -2.3 bits;  conditional E-value: 1.4
   TIGR02144 252 dvpEfKntvrvtgvnvaeklveyvvel 278
                 + p fK ++ ++  ++a+ +++ + el
  MMETSP1137-20121227|2118_1  41 HDPPFKKIMAANRAEIAQRIMRAATEL 67 
                 6788****************9998875 PP

  == domain 2    score: 28.4 bits;  conditional E-value: 6.1e-10
   TIGR02144  65 aalleelGvkvinss.eviiacgdKvfttlkLakagvPt.Pkti.vafdkeaalklaeelGyPvvlKPveGsWGrlvskvkdkdeaeallehk..evlkgsqlklylvqEyinkpgRDiRvfviGd...eaiaaiyRvs....eewrtntArGgkaepvkvdeeveelavkaaeavg.gevvaiDivEskerGllvnEvndv..pEfKntvrvtgvnvaeklvey 274
                 a+l+e++G++ + ++ e + +  dK  + ++  ka+vP+ P t   ++  eaa+  ++e G Pv++K ++G  G+ +  v++k+e+ al      e+   +     ++  +++kp R i v +iGd   +++    R       + +    + +   p ++ ++++e + + + a + +++ +++ + ++e     +Evn+   +E+  t +vtg+++++  ++ 
  MMETSP1137-20121227|2118_1 139 AQLCEDAGITFVGPTiENLKTFADKTTARVAAIKADVPVvPGTDePVTTVEAAQAFVDEYGLPVIIKAAMGGGGKGMRVVRSKEELPALFTTAssEAKAAFGDGSVFLERFLDKP-RHIEVQIIGDgkgNVVHLWERDCsvqrRHQKVVEIAPAWNLPTELRKQLHEDSKRLMSAANyKNAGTVEFLVDQEGRHYFIEVNPRiqVEHTVTEEVTGIDIPQAQLRI 362
                 7889999*999987637899******************64877525778899999*******************************999765411455555556677899**999.99*******9333345555565444223333333445666788999999999999988877245677998777765566779**9622577778899****99876655 PP

>> TIGR00768  rimK_fam: alpha-L-glutamate ligases, RimK family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.9   0.0   8.3e-09   2.4e-06      65     271 ..     139     358 ..     130     363 .. 0.75

  Alignments for each domain:
  == domain 1    score: 24.9 bits;  conditional E-value: 8.3e-09
   TIGR00768  65 lraleslGveviNss.qaienagdKllssalLakaglpl.pktl.vagseeeakklieeigfPvvlKpvfGswGklvvlvedkqeaekllealeqlke.ky..kvflvQeyikksggrdiRvfVvgd...evvaaiyr.ikseefrsNlarGgka..ekcelteeieelaikaakalgldvag.iDllesedkgllvlEvNasve..fknsekvtgvniAek 271
                 +++ e +G+  + ++ + +++  dK    ++  ka +p+ p t   ++  e+a+++++e g Pv++K ++G  Gk++  v+ k+e+ +l      +++ ++   ++++  + +k+    i v ++gd   +vv   +r    ++    +   + a   + el ++ +e + + + a + + ag + +l ++++   ++EvN+ ++   + +e+vtg++i++ 
  MMETSP1137-20121227|2118_1 139 AQLCEDAGITFVGPTiENLKTFADKTTARVAAIKADVPVvPGTDePVTTVEAAQAFVDEYGLPVIIKAAMGGGGKGMRVVRSKEELPALFTTASSEAKaAFgdGSVFLERFLDKPR--HIEVQIIGDgkgNVVHLWERdCSVQRRHQKVVEIAPAwnLPTELRKQLHEDSKRLMSAANYKNAGtVEFLVDQEGRHYFIEVNPRIQveHTVTEEVTGIDIPQA 358
                 566777777777776246777788888888888888886344431455778999***********************999999999999887777776554226789999****99..677778886444799999998555555555555555511567788888888888888877766554********999*******76511566789******986 PP

>> TIGR01108  oadA: oxaloacetate decarboxylase alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.0      0.12        35     388     455 ..     283     351 ..     276     406 .. 0.59
   2 !   19.5   0.1     2e-07   5.9e-05       1      26 [.     596     621 ..     596     623 .. 0.92

  Alignments for each domain:
  == domain 1    score: 0.4 bits;  conditional E-value: 0.12
   TIGR01108 388 kailevrPadllepeldk.lraevreagaekesdeDvLlvalfpevgkkflenrenpvafeeaveekki 455
                 ++++e+ Pa  l+ el k l+++ ++  + ++ ++   +  l+++ g++++ + +  + +e++v+e+++
  MMETSP1137-20121227|2118_1 283 QKVVEIAPAWNLPTELRKqLHEDSKRLMSAANYKNAGTVEFLVDQEGRHYFIEVNPRIQVEHTVTEEVT 351
                 556677777777777765145555555555566666666667777777777766666777777766644 PP

  == domain 2    score: 19.5 bits;  conditional E-value: 2e-07
   TIGR01108   1 itdvvlrdahqsllatrlrteDmLpi 26 
                 +td++ rdahqsllatr+rt+++L +
  MMETSP1137-20121227|2118_1 596 LTDTTWRDAHQSLLATRMRTQELLTA 621
                 59********************9975 PP

>> TIGR02068  cya_phycin_syn: cyanophycin synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.0   5.3e-07   0.00015     213     295 ..     162     251 ..     153     276 .. 0.79

  Alignments for each domain:
  == domain 1    score: 17.7 bits;  conditional E-value: 5.3e-07
   TIGR02068 213 DkeltkklLkaaGvPvPeGt..vvqsaeeaeeaaeelGyPvvikPldGnhGrGvtiniesreeiesayeaakees......seviverfik 295
                 Dk +++    +a vPv  Gt   v ++e+a+  ++e G+Pv+ik   G  G+G+ + ++s+ee+ + + +a+ e+       +v  erf+ 
  MMETSP1137-20121227|2118_1 162 DKTTARVAAIKADVPVVPGTdePVTTVEAAQAFVDEYGLPVIIKAAMGGGGKGMRV-VRSKEELPALFTTASSEAkaafgdGSVFLERFLD 251
                 677777777788999988862359999999999*********************98.89**********9998874444444688888874 PP

>> TIGR03909  pyrrolys_PylC: pyrrolysine biosynthesis protein PylC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   8.3e-05     0.024     124     254 ..     199     341 ..     191     378 .. 0.78

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 8.3e-05
   TIGR03909 124 efPvlvkPscesssegvriindrkeleellklesed........nlvveeyleGe.svsleviGdkg.nyavvkiteleidatydCkrvlaPa.eldlekkdefrelalklaaelnlkGimdvevilheek.lkvleidarlP 254
                 + Pv++k + + + +g+r++++++el  l+   s +        ++ +e +l+ +  + +++iGd++ n   + + +  +   +     +aPa +l +e++++++e + +l ++ n k    ve ++++e+    +e++ r+ 
  MMETSP1137-20121227|2118_1 199 GLPVIIKAAMGGGGKGMRVVRSKEELPALFTTASSEakaafgdgSVFLERFLDKPrHIEVQIIGDGKgNVVHLWERDCSVQRRHQKVVEIAPAwNLPTELRKQLHEDSKRLMSAANYKNAGTVEFLVDQEGrHYFIEVNPRIQ 341
                 68***************************765543211222222567899998763689999**986155556778888888888777799986799***************************9998776155788888875 PP

>> TIGR02291  rimK_rel_E_lig: alpha-L-glutamate ligase homolog
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0       1.7   4.9e+02     254     294 ..      30      68 ..      28      75 .. 0.80
   2 ?   10.3   0.0   0.00018     0.052      41      99 ..     164     223 ..     156     236 .. 0.80

  Alignments for each domain:
  == domain 1    score: -2.7 bits;  conditional E-value: 1.7
   TIGR02291 254 vldkekGplvlelnarpGlaiqiandaGlshrlkeveakle 294
                 vld e Gp+v      p  +i  an+a +++r+ +  ++l+
  MMETSP1137-20121227|2118_1  30 VLDLEVGPVVPH--DPPFKKIMAANRAEIAQRIMRAATELN 68 
                 889999998864..568889999999999999988877765 PP

  == domain 2    score: 10.3 bits;  conditional E-value: 0.00018
   TIGR02291  41 tkelaiaaGiavpelyGvietqkevksldeivkdhe.dfvikpaqGsGGdGilvitdrle 99 
                 t  +  a  + vp + G  e  + v++ + +v+++    +ik a G GG+G+ v+ ++ e
  MMETSP1137-20121227|2118_1 164 TTARVAAIKADVPVVPGTDEPVTTVEAAQAFVDEYGlPVIIKAAMGGGGKGMRVVRSKEE 223
                 4445556667899999**9999************9735779**************98865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (624 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       153  (0.0372989); expected 82.0 (0.02)
Passed bias filter:                      134  (0.032667); expected 82.0 (0.02)
Passed Vit filter:                        25  (0.00609459); expected 4.1 (0.001)
Passed Fwd filter:                        14  (0.00341297); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.67u 0.14s 00:00:00.81 Elapsed: 00:00:00.81
# Mc/sec: 1016.80
//
Query:       MMETSP1137-20121227|2119_1  [L=520]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (520 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       119  (0.0290102); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.12s 00:00:00.47 Elapsed: 00:00:00.47
# Mc/sec: 1460.30
//
Query:       MMETSP1137-20121227|2121_1  [L=402]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (402 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        81  (0.0197465); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.13s 00:00:00.41 Elapsed: 00:00:00.48
# Mc/sec: 1105.41
//
Query:       MMETSP1137-20121227|2122_1  [L=349]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      2e-16   57.6   0.1    7.1e-16   55.8   0.1    1.8  1  TIGR01350 lipoamide_DH: dihydrolipoyl dehydrogenase
    6.3e-11   39.7   0.3    3.1e-06   24.3   0.0    2.9  2  TIGR02053 MerA: mercuric reductase
    4.6e-09   33.8   0.1     0.0012   15.9   0.1    2.2  2  TIGR01421 gluta_reduc_1: glutathione-disulfide reductase
    1.5e-08   31.5   0.5    3.8e-06   23.6   0.0    2.8  3  TIGR01424 gluta_reduc_2: glutathione-disulfide reductase
    1.6e-07   28.4   0.1    3.4e-07   27.3   0.0    1.6  2  TIGR03452 mycothione_red: mycothione reductase
    3.4e-06   24.0   0.0     0.0025   14.6   0.0    2.1  2  TIGR01438 TGR: thioredoxin and glutathione reductase
    2.2e-05   22.1   0.2    4.8e-05   21.0   0.1    1.6  1  TIGR02032 GG-red-SF: geranylgeranyl reductase family
    0.00019   17.9   0.0      0.014   11.8   0.0    2.1  2  TIGR01423 trypano_reduc: trypanothione-disulfide reductase
    0.00057   16.2   0.1     0.0016   14.7   0.0    1.7  2  TIGR03997 mycofact_OYE_2: mycofactocin system FadH/OYE family oxidoreductase 2
    0.00079   15.1   0.0     0.0014   14.2   0.0    1.3  1  TIGR01372 soxA: sarcosine oxidase, alpha subunit family
    0.00082   16.1   0.4     0.0087   12.7   0.1    2.4  3  TIGR01292 TRX_reduct: thioredoxin-disulfide reductase
     0.0018   15.0   0.1     0.0054   13.4   0.0    1.8  2  TIGR02485 CobZ_N-term: precorrin 3B synthase CobZ
      0.003   14.0   0.2     0.0065   12.9   0.0    1.6  2  TIGR03140 AhpF: alkyl hydroperoxide reductase, F subunit
     0.0031   14.2   0.1      0.055   10.1   0.1    2.1  2  TIGR00275 TIGR00275: flavoprotein, HI0933 family
     0.0072   13.2   0.0      0.012   12.4   0.0    1.4  1  TIGR03378 glycerol3P_GlpB: glycerol-3-phosphate dehydrogenase, anaerobic, B subunit
  ------ inclusion threshold ------
      0.013   12.2   0.5      0.032   10.9   0.1    1.8  2  TIGR04018 Bthiol_YpdA: putative bacillithiol system oxidoreductase, YpdA family
      0.014   12.1   0.5       0.12    9.0   0.1    2.0  2  TIGR01988 Ubi-OHases: ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family
      0.014   12.4   0.2          1    6.3   0.0    2.4  2  TIGR03169 Nterm_to_SelD: pyridine nucleotide-disulfide oxidoreductase family protein
      0.022   11.6   0.1      0.038   10.8   0.1    1.4  1  TIGR02023 BchP-ChlP: geranylgeranyl reductase
      0.022   11.2   0.1      0.037   10.4   0.1    1.3  1  TIGR03143 AhpF_homolog: putative alkyl hydroperoxide reductase F subunit
       0.03   10.9   0.5       0.18    8.3   0.2    1.9  2  TIGR01813 flavo_cyto_c: flavocytochrome c
      0.031   10.9   0.0       0.27    7.7   0.0    2.0  2  TIGR03385 CoA_CoA_reduc: CoA-disulfide reductase
      0.058    9.9   0.9       0.62    6.5   0.0    2.3  3  TIGR00551 nadB: L-aspartate oxidase
       0.18    8.7   6.3      0.071   10.0   0.3    2.6  3  TIGR03364 HpnW_proposed: FAD dependent oxidoreductase TIGR03364


Domain annotation for each model (and alignments):
>> TIGR01350  lipoamide_DH: dihydrolipoyl dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.8   0.1   4.2e-18   7.1e-16       1     190 [.      64     270 ..      64     278 .. 0.80

  Alignments for each domain:
  == domain 1    score: 55.8 bits;  conditional E-value: 4.2e-18
   TIGR01350   1 eydvvviGgGpgGYvaAiraaqlglkvalvek.eklGGtClnvGCiPtKalLksaevveelkeakelgievenvkldlekllerkekvvkklvgGvkaLlkknkvevikGeaklld........kkevevkkekke.kkleakniiiAtGseprelplk............leedekvvitseealelkevpeslvivGgGviGvEfasifa 190
                 +ydvvviGgGp G +a  raa  g   +lv+   +     +    + +Kal  +a  ++ ++ + ++gi  + +   ++++ e  + + kk  +  +  l+  +v ++ G++ l           ++v+v+ ++++ + ++akn+++ tGs+  +lp              +  ++ +v +s+++ +l+ +p+s+vivGgG+i vEfa if 
  MMETSP1137-20121227|2122_1  64 SYDVVVIGGGPVGITAVLRAATIGRTAILVDAtPREQFQFTGPTGLFSKALRDAALRLD-VSVLRSMGIGDAAI---WAQVRELVDLIKKKAGENNADALTLSRVPHLRGKGALDTgdhesndgLRTVRVTVSARQcELVKAKNVLLCTGSRAVRLPSLgplydtlveherFGPER-RVFDSDSIKTLSFLPRSVVIVGGGIIAVEFARIFX 270
                 59****************************975222233334445779**876666666.899******66544...6666666666666766666677778889999999999877777777767888888877779*******************9999999985544433333.8********************************96 PP

>> TIGR02053  MerA: mercuric reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.5   0.2   0.00014     0.023       1      31 [.      65      95 ..      65      98 .. 0.94
   2 !   24.3   0.0   1.8e-08   3.1e-06     119     271 ..     191     348 ..     180     349 .] 0.68

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 0.00014
   TIGR02053  1 ydlviiGsGaaafaaaikaaelgakvvlver 31
                yd+v+iG+G  +++a+++aa +g+  +lv+ 
  MMETSP1137-20121227|2122_1 65 YDVVVIGGGPVGITAVLRAATIGRTAILVDA 95
                9*************************99985 PP

  == domain 2    score: 24.3 bits;  conditional E-value: 1.8e-08
   TIGR02053 119 vkvdlgkevvgakrvliAtGarp.avPeipGLkeae...........yltseelleldkipeslvviGggaiavElaqlfar...lGse.vtllqrserllkeeepeisaaveellaeeGvevvksakvkavskrnggkklvtvekndskkeveadellvAtGRkpnvd 271
                 v++  + e+v+ak+vl+ tG+r+ + P++  L ++            +++s+++  l  +p+s+v++Ggg iavE+a +f     l ++ v ll  se  +k+ +   s+ v+++    G + ++++ ++    r gg+         +++ v ad l+ AtGR++++d
  MMETSP1137-20121227|2122_1 191 VSAR-QCELVKAKNVLLCTGSRAvRLPSLGPLYDTLveherfgperrVFDSDSIKTLSFLPRSVVIVGGGIIAVEFARIFXMqrdLQLNgVRLLFESE--VKSVQMPPSERVRKA--AGGGRDSRRSPLTIELARTGGEA------ALGRRPVMADILFTATGRRAVTD 348
                 3333.568899999*******983468887777766667799*************************************9741112221244455554..444444445555543..24445555555555444433333......33456799999999999999988 PP

>> TIGR01421  gluta_reduc_1: glutathione-disulfide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.1   7.3e-06    0.0012       2      33 ..      64      95 ..      63      98 .. 0.94
   2 !   15.6   0.0   8.8e-06    0.0015     128     186 ..     199     270 ..     175     278 .. 0.70

  Alignments for each domain:
  == domain 1    score: 15.9 bits;  conditional E-value: 7.3e-06
   TIGR01421  2 eydylviGGGsGGiasarraaeyGakallvee 33
                +yd++viGGG  Gi+++ raa+ G  a+lv++
  MMETSP1137-20121227|2122_1 64 SYDVVVIGGGPVGITAVLRAATIGRTAILVDA 95
                7***************************9986 PP

  == domain 2    score: 15.6 bits;  conditional E-value: 8.8e-06
   TIGR01421 128 ytakhiliatGgkpsip.............eniPGaelgldsdgffaleelPkrvvivGaGyiavelaGvlh 186
                 ++ak +l+ tG+++  +             e    +    dsd + +l  lP++vvivG G iave+a ++ 
  MMETSP1137-20121227|2122_1 199 VKAKNVLLCTGSRAVRLpslgplydtlvehERFGPERRVFDSDSIKTLSFLPRSVVIVGGGIIAVEFARIFX 270
                 66777777777766544333334332222122222334579***************************9985 PP

>> TIGR01424  gluta_reduc_2: glutathione-disulfide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.2   0.0    0.0084       1.4       3      27 ..      65      89 ..      63     102 .. 0.89
   2 !   23.6   0.0   2.2e-08   3.8e-06     120     186 ..     187     270 ..     175     283 .. 0.69
   3 ?   -3.2   0.0       2.8   4.8e+02     248     266 ..     330     348 ..     324     349 .] 0.81

  Alignments for each domain:
  == domain 1    score: 5.2 bits;  conditional E-value: 0.0084
   TIGR01424  3 ydlfviGaGsGGvraarlaaalGak 27
                yd+ viG+G  G+ a  +aa+ G+ 
  MMETSP1137-20121227|2122_1 65 YDVVVIGGGPVGITAVLRAATIGRT 89
                9********************9975 PP

  == domain 2    score: 23.6 bits;  conditional E-value: 2.2e-08
   TIGR01424 120 vevledgk...tytaekiliavGgrpvk........pelPGae......laitsdeafdletlPksilvvGgGyiavefagifr 186
                 v+v+ +++    + a+++l+ +G+r+v+        ++l  +e          sd +  l  lP+s+++vGgG iavefa if 
  MMETSP1137-20121227|2122_1 187 VRVTVSARqceLVKAKNVLLCTGSRAVRlpslgplyDTLVEHErfgperRVFDSDSIKTLSFLPRSVVIVGGGIIAVEFARIFX 270
                 55544333222677888888888887654222222233333332111113567999999***********************85 PP

  == domain 3    score: -3.2 bits;  conditional E-value: 2.8
   TIGR01424 248 eeivadvvllatGrvPnvk 266
                  +++ad+++ atGr   ++
  MMETSP1137-20121227|2122_1 330 RPVMADILFTATGRRAVTD 348
                 5789999999999998776 PP

>> TIGR03452  mycothione_red: mycothione reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.0         4   6.9e+02     168     182 ..      63      77 ..      56      94 .. 0.65
   2 !   27.3   0.0     2e-09   3.4e-07     120     189 ..     189     270 ..     175     348 .. 0.70

  Alignments for each domain:
  == domain 1    score: -3.4 bits;  conditional E-value: 4
   TIGR03452 168 lpeslvivGgGyial 182
                    ++v++GgG + +
  MMETSP1137-20121227|2122_1  63 DSYDVVVIGGGPVGI 77 
                 555677777776654 PP

  == domain 2    score: 27.3 bits;  conditional E-value: 2e-09
   TIGR03452 120 ktlrtedgeeitadqvviaaGsrpvipea...iaesgv.........ryytnedimrlpelpeslvivGgGyialefahvfs 189
                  t++  + e + a++v++ +Gsr+v  +    + ++ v         r + ++ i  l+ lp+s+vivGgG+ia+efa++f 
  MMETSP1137-20121227|2122_1 189 VTVSARQCELVKAKNVLLCTGSRAVRLPSlgpLYDTLVeherfgperRVFDSDSIKTLSFLPRSVVIVGGGIIAVEFARIFX 270
                 4566677777999999999999986333212223333311111112256789*****************************6 PP

>> TIGR01438  TGR: thioredoxin and glutathione reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.0   1.5e-05    0.0025       2      34 ..      64      96 ..      63     108 .. 0.91
   2 !    7.5   0.0     0.002      0.35     129     198 ..     186     267 ..     144     282 .. 0.79

  Alignments for each domain:
  == domain 1    score: 14.6 bits;  conditional E-value: 1.5e-05
   TIGR01438  2 dydliviGgGsGGlaaakeaaklgakvllldfv 34
                 yd++viGgG+ G++a  +aa  g+  +l+d+ 
  MMETSP1137-20121227|2122_1 64 SYDVVVIGGGPVGITAVLRAATIGRTAILVDAT 96
                6*****************************974 PP

  == domain 2    score: 7.5 bits;  conditional E-value: 0.002
   TIGR01438 129 vikatdkkkkeeilsakrvliatGlr........pkypddie....GakelsitsddlfslkkvpGktlvvGasyvalecaG 198
                 +++ t   ++ e++ ak+vl++tG r        p y   +e    G       sd + +l+  p   ++vG++ +a+e a 
  MMETSP1137-20121227|2122_1 186 TVRVTVSARQCELVKAKNVLLCTGSRavrlpslgPLYDTLVEherfGPERRVFDSDSIKTLSFLPRSVVIVGGGIIAVEFAR 267
                 677777788889999999999999985444333334444454223345566789************************9885 PP

>> TIGR02032  GG-red-SF: geranylgeranyl reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.0   0.1   2.8e-07   4.8e-05       1      32 [.      65      96 ..      65     126 .. 0.93

  Alignments for each domain:
  == domain 1    score: 21.0 bits;  conditional E-value: 2.8e-07
   TIGR02032  1 yDvvvvGaGpaGssaAlrlakkGlrVlllekk 32
                yDvvv+G+Gp G +a lr+a+ G++ +l++ +
  MMETSP1137-20121227|2122_1 65 YDVVVIGGGPVGITAVLRAATIGRTAILVDAT 96
                9****************************986 PP

>> TIGR01423  trypano_reduc: trypanothione-disulfide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.0     0.018         3       3      30 ..      64      91 ..      62     107 .. 0.86
   2 !   11.8   0.0   8.1e-05     0.014     182     209 ..     245     272 ..     224     287 .. 0.84

  Alignments for each domain:
  == domain 1    score: 4.0 bits;  conditional E-value: 0.018
   TIGR01423  3 aydlvvigagsggleagwnaaslykkrv 30
                +yd+vvig g  g+ a   aa++ +  +
  MMETSP1137-20121227|2122_1 64 SYDVVVIGGGPVGITAVLRAATIGRTAI 91
                7********************9976554 PP

  == domain 2    score: 11.8 bits;  conditional E-value: 8.1e-05
   TIGR01423 182 yleeapkrvltvgggyisvefagifnay 209
                  l   p+ v++vggg i+vefa if   
  MMETSP1137-20121227|2122_1 245 TLSFLPRSVVIVGGGIIAVEFARIFXMQ 272
                 566789*******************865 PP

>> TIGR03997  mycofact_OYE_2: mycofactocin system FadH/OYE family oxidoreductase 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0   9.6e-06    0.0016     377     412 ..      62      97 ..      48     109 .. 0.86
   2 ?   -2.6   0.0       1.6   2.7e+02     461     483 ..     198     220 ..     185     243 .. 0.69

  Alignments for each domain:
  == domain 1    score: 14.7 bits;  conditional E-value: 9.6e-06
   TIGR03997 377 rrrkkvlvvGgGPaGleaaataarrGhrvtlleree 412
                 r +  v+v+GgGP G++a   aa+ G + +l++   
  MMETSP1137-20121227|2122_1  62 RDSYDVVVIGGGPVGITAVLRAATIGRTAILVDATP 97 
                 45568**************************99765 PP

  == domain 2    score: -2.6 bits;  conditional E-value: 1.6
   TIGR03997 461 aekPDavvlatGsrparpdlaga 483
                   k   v+l tGsr++r +  g 
  MMETSP1137-20121227|2122_1 198 LVKAKNVLLCTGSRAVRLPSLGP 220
                 3344579999****999876665 PP

>> TIGR01372  soxA: sarcosine oxidase, alpha subunit family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.0   8.4e-06    0.0014     169     201 ..      65      97 ..      56     108 .. 0.90

  Alignments for each domain:
  == domain 1    score: 14.2 bits;  conditional E-value: 8.4e-06
   TIGR01372 169 cDvLvvGaGpaGLaaAraAaraGarvilvdeqa 201
                  Dv+v+G+Gp G++a + Aa+ G   ilvd ++
  MMETSP1137-20121227|2122_1  65 YDVVVIGGGPVGITAVLRAATIGRTAILVDATP 97 
                 59****************************765 PP

>> TIGR01292  TRX_reduct: thioredoxin-disulfide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.7   0.1   5.1e-05    0.0087       1      31 [.      65      95 ..      65     105 .. 0.86
   2 ?   -1.3   0.0      0.93   1.6e+02      90     113 ..     190     213 ..     181     218 .. 0.78
   3 ?   -0.5   0.0      0.55        93     139     157 ..     248     266 ..     245     273 .. 0.83

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 5.1e-05
   TIGR01292  1 ydviiiGaGpaGltaaiYaaranlktllieg 31
                ydv++iG+Gp G+ta + aa  + +++l++ 
  MMETSP1137-20121227|2122_1 65 YDVVVIGGGPVGITAVLRAATIGRTAILVDA 95
                79*****************999999998873 PP

  == domain 2    score: -1.3 bits;  conditional E-value: 0.93
   TIGR01292  90 kvltedekeykakaviiAtGakar 113
                 +v +++ + +kak v+++tG++a 
  MMETSP1137-20121227|2122_1 190 TVSARQCELVKAKNVLLCTGSRAV 213
                 45556778899*********9875 PP

  == domain 3    score: -0.5 bits;  conditional E-value: 0.55
   TIGR01292 139 fknkevavvGggdsAveea 157
                 f  ++v++vGgg  Ave a
  MMETSP1137-20121227|2122_1 248 FLPRSVVIVGGGIIAVEFA 266
                 556899******9999977 PP

>> TIGR02485  CobZ_N-term: precorrin 3B synthase CobZ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.0   3.2e-05    0.0054       2      37 ..      65     100 ..      64     115 .. 0.93
   2 ?   -1.7   0.0       1.2     2e+02     119     165 ..     251     302 ..     240     325 .. 0.59

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 3.2e-05
   TIGR02485   2 vdvlviGgGlaglCaaiearraGasvllleaaPrdl 37 
                  dv+viGgG  g+ a + a+  G +  l++a+Pr++
  MMETSP1137-20121227|2122_1  65 YDVVVIGGGPVGITAVLRAATIGRTAILVDATPREQ 100
                 59*******************************985 PP

  == domain 2    score: -1.7 bits;  conditional E-value: 1.2
   TIGR02485 119 rtafllGGGkalvn.a....lyasaerl.Gveiryeaeveriereedgratia 165
                 r++ ++GGG   v  a    + +  + l Gv++ +e+ev+++++   +r   a
  MMETSP1137-20121227|2122_1 251 RSVVIVGGGIIAVEfArifxMQRDLQ-LnGVRLLFESEVKSVQMPPSERVRKA 302
                 56666666654333121110222223.34899999999999988655555444 PP

>> TIGR03140  AhpF: alkyl hydroperoxide reductase, F subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.9   0.0   3.8e-05    0.0065     210     240 ..      62      91 ..      50      99 .. 0.84
   2 ?   -3.5   0.0       3.6   6.1e+02     301     322 ..     190     211 ..     185     215 .. 0.83

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 3.8e-05
   TIGR03140 210 kekydvlvvGgGPagaaaaiyaarkGlkval 240
                 ++ ydv+v+GgGP g +a + aa  G ++a+
  MMETSP1137-20121227|2122_1  62 RDSYDVVVIGGGPVGITAVLRAATIG-RTAI 91 
                 789****************9999888.4444 PP

  == domain 2    score: -3.5 bits;  conditional E-value: 3.6
   TIGR03140 301 evelesGevlkaksvivatGak 322
                 +v+ ++ e +kak v+++tG++
  MMETSP1137-20121227|2122_1 190 TVSARQCELVKAKNVLLCTGSR 211
                 6788899999999999999986 PP

>> TIGR00275  TIGR00275: flavoprotein, HI0933 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.1   0.1   0.00032     0.055       1      31 [.      67      97 ..      67     104 .. 0.92
   2 ?    1.7   0.0      0.12        20     139     166 ..     189     219 ..     179     232 .. 0.76

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 0.00032
   TIGR00275  1 viiiGgGaaGlmaAitaaeegakVlllEknk 31
                v++iGgG+ G++a ++aa+ g+  +l++++ 
  MMETSP1137-20121227|2122_1 67 VVVIGGGPVGITAVLRAATIGRTAILVDATP 97
                79*****************999999999875 PP

  == domain 2    score: 1.7 bits;  conditional E-value: 0.12
   TIGR00275 139 fevet.ekkeleakkvilatGgksy..pklG 166
                 ++v++ + + ++ak+v+l+tG+ ++  p+lG
  MMETSP1137-20121227|2122_1 189 VTVSArQCELVKAKNVLLCTGSRAVrlPSLG 219
                 455556678899**********885335555 PP

>> TIGR03378  glycerol3P_GlpB: glycerol-3-phosphate dehydrogenase, anaerobic, B subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.4   0.0   7.1e-05     0.012       1      31 [.      65      95 ..      65     126 .. 0.92

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 7.1e-05
   TIGR03378  1 fDviiiGgGlaGlscalrlaeaGkktaiiaa 31
                +Dv++iGgG  G+++ lr+a  G+ ++++ a
  MMETSP1137-20121227|2122_1 65 YDVVVIGGGPVGITAVLRAATIGRTAILVDA 95
                9**********************99998865 PP

>> TIGR04018  Bthiol_YpdA: putative bacillithiol system oxidoreductase, YpdA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.1   0.00019     0.032       1      29 [.      66      94 ..      66     102 .. 0.90
   2 ?   -2.5   0.0       2.1   3.6e+02     149     167 ..     247     265 ..     244     269 .. 0.76

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 0.00019
   TIGR04018  1 dviiiGaGPiGlaaaieakkaglsyliie 29
                dv++iG+GP+G++a + a   g ++++++
  MMETSP1137-20121227|2122_1 66 DVVVIGGGPVGITAVLRAATIGRTAILVD 94
                89**************9999998888776 PP

  == domain 2    score: -2.5 bits;  conditional E-value: 2.1
   TIGR04018 149 pyvkqkvvvvGgknsavda 167
                 +++ ++vv+vGg   av+ 
  MMETSP1137-20121227|2122_1 247 SFLPRSVVIVGGGIIAVEF 265
                 5777888999988877775 PP

>> TIGR01988  Ubi-OHases: ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   0.1   0.00072      0.12       1      36 [.      66     100 ..      66     146 .. 0.75
   2 ?    1.4   0.0      0.14        24       2      26 ..     253     277 ..     252     304 .. 0.77

  Alignments for each domain:
  == domain 1    score: 9.0 bits;  conditional E-value: 0.00072
   TIGR01988   1 divIvGgGlvGlalAlaLassadlkvalveakaaek 36 
                 d+v++GgG+vG +  l+ a  +     lv+a++ e+
  MMETSP1137-20121227|2122_1  66 DVVVIGGGPVGITAVLRAATIG-RTAILVDATPREQ 100
                 9**********99888777555.6667788887776 PP

  == domain 2    score: 1.4 bits;  conditional E-value: 0.14
   TIGR01988   2 ivIvGgGlvGlalAlaLassadlkv 26 
                 +vIvGgG++   +A  +  + dl+ 
  MMETSP1137-20121227|2122_1 253 VVIVGGGIIAVEFARIFXMQRDLQL 277
                 8********9999998887776654 PP

>> TIGR03169  Nterm_to_SelD: pyridine nucleotide-disulfide oxidoreductase family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.0     0.024       4.1     134     167 ..      53      86 ..      39     215 .. 0.86
   2 ?    6.3   0.0    0.0059         1     146     178 ..     251     283 ..     239     347 .. 0.67

  Alignments for each domain:
  == domain 1    score: 4.3 bits;  conditional E-value: 0.024
   TIGR03169 134 ellekakaseetkslavvGgGaagvElalalrkr 167
                 + l+  ++ +++ +++v+GgG  g+  +l  +  
  MMETSP1137-20121227|2122_1  53 SCLDXIRMLRDSYDVVVIGGGPVGITAVLRAATI 86 
                 55666777788889**********9888876554 PP

  == domain 2    score: 6.3 bits;  conditional E-value: 0.0059
   TIGR03169 146 kslavvGgGaagvEla..lalrkrlkkrglkaevs 178
                 +s+++vGgG+ +vE a  + +++ l+ +g++  + 
  MMETSP1137-20121227|2122_1 251 RSVVIVGGGIIAVEFAriFXMQRDLQLNGVR--LL 283
                 589***********98334577777777666..33 PP

>> TIGR02023  BchP-ChlP: geranylgeranyl reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.1   0.00022     0.038       1      31 [.      65      95 ..      65     102 .. 0.94

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 0.00022
   TIGR02023  1 ydvlviGggpsGaaaaetLakagieviller 31
                ydv+viGggp G +a    a  g   il++ 
  MMETSP1137-20121227|2122_1 65 YDVVVIGGGPVGITAVLRAATIGRTAILVDA 95
                89**************************985 PP

>> TIGR03143  AhpF_homolog: putative alkyl hydroperoxide reductase F subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.1   0.00022     0.037       4      25 ..      64      85 ..      61     101 .. 0.80

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 0.00022
   TIGR03143  4 lydlvviGgGpaglsaGiyagr 25
                 yd+vviGgGp g++a + a+ 
  MMETSP1137-20121227|2122_1 64 SYDVVVIGGGPVGITAVLRAAT 85
                6***************998765 PP

>> TIGR01813  flavo_cyto_c: flavocytochrome c
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   0.2     0.001      0.18       1      30 [.      66      94 ..      66      99 .. 0.89
   2 ?    0.4   0.0      0.27        45     164     189 ..     184     209 ..     142     216 .. 0.85

  Alignments for each domain:
  == domain 1    score: 8.3 bits;  conditional E-value: 0.001
   TIGR01813  1 dvvvvGsGlAGlsaaleakkaglaevvvle 30
                dvvv+G G  G++a l+a + g + +++++
  MMETSP1137-20121227|2122_1 66 DVVVIGGGPVGITAVLRAATIG-RTAILVD 94
                8*********************.7777777 PP

  == domain 2    score: 0.4 bits;  conditional E-value: 0.27
   TIGR01813 164 vtGvkvkekgkkikikaakaVvlatG 189
                 +  v v+ +  + ++++ak+V+l+tG
  MMETSP1137-20121227|2122_1 184 LRTVRVTVSARQCELVKAKNVLLCTG 209
                 4557788899999************9 PP

>> TIGR03385  CoA_CoA_reduc: CoA-disulfide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.0       0.2        34     150     178 ..      65      93 ..      56      98 .. 0.74
   2 ?    7.7   0.0    0.0016      0.27     132     169 ..     235     270 ..     186     284 .. 0.79

  Alignments for each domain:
  == domain 1    score: 0.8 bits;  conditional E-value: 0.2
   TIGR03385 150 ekvvviGgGyiglemvealkergkevtli 178
                  +vvviGgG +g+  v  + + g    l+
  MMETSP1137-20121227|2122_1  65 YDVVVIGGGPVGITAVLRAATIGRTAILV 93 
                 57899999999998777666666666665 PP

  == domain 2    score: 7.7 bits;  conditional E-value: 0.0016
   TIGR03385 132 rnledaeaikkyldkkkvekvvviGgGyiglemvealk 169
                 r++ d++ ik++      ++vv++GgG+i++e +  + 
  MMETSP1137-20121227|2122_1 235 RRVFDSDSIKTLS--FLPRSVVIVGGGIIAVEFARIFX 270
                 5666777777764..66899************987664 PP

>> TIGR00551  nadB: L-aspartate oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   0.0    0.0036      0.62       2      33 ..      64      95 ..      63     110 .. 0.87
   2 ?    1.7   0.0      0.11        18     162     187 ..     184     210 ..     137     214 .. 0.77
   3 ?   -4.0   0.0       5.6   9.6e+02       4      19 ..     252     267 ..     251     274 .. 0.77

  Alignments for each domain:
  == domain 1    score: 6.5 bits;  conditional E-value: 0.0036
   TIGR00551  2 eadvvviGsGaagLsaalalaekyrvvvlska 33
                + dvvviG+G  g++a l++a  +r ++l  a
  MMETSP1137-20121227|2122_1 64 SYDVVVIGGGPVGITAVLRAATIGRTAILVDA 95
                689********************998887665 PP

  == domain 2    score: 1.7 bits;  conditional E-value: 0.11
   TIGR00551 162 vvGvlvves.etvevlhakavvlatGG 187
                 ++ v v+ s  ++e+++ak+v+l tG 
  MMETSP1137-20121227|2122_1 184 LRTVRVTVSaRQCELVKAKNVLLCTGS 210
                 455555555589*************96 PP

  == domain 3    score: -4.0 bits;  conditional E-value: 5.6
   TIGR00551   4 dvvviGsGaagLsaal 19 
                  vv++G+G+ ++  a 
  MMETSP1137-20121227|2122_1 252 SVVIVGGGIIAVEFAR 267
                 5899999998887765 PP

>> TIGR03364  HpnW_proposed: FAD dependent oxidoreductase TIGR03364
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.3   0.00041     0.071       1      34 [.      65      98 ..      65     101 .. 0.92
   2 ?   -1.4   0.0       1.2   2.1e+02     176     197 ..     190     212 ..     176     217 .. 0.75
   3 ?    0.9   0.1      0.24        42       2      16 ..     252     266 ..     251     273 .. 0.86

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 0.00041
   TIGR03364  1 tdvvvvGaGivGlahAlaaarrGlkVtvierssr 34
                +dvvv+G+G vG+   l+aa  G + ++++ ++r
  MMETSP1137-20121227|2122_1 65 YDVVVIGGGPVGITAVLRAATIGRTAILVDATPR 98
                79***********************999998776 PP

  == domain 2    score: -1.4 bits;  conditional E-value: 1.2
   TIGR03364 176 tvrtsrGevh.aeqvlVcsgadf 197
                 tv+  + e++ a++vl c+g+  
  MMETSP1137-20121227|2122_1 190 TVSARQCELVkAKNVLLCTGSRA 212
                 56666777778*******99876 PP

  == domain 3    score: 0.9 bits;  conditional E-value: 0.24
   TIGR03364   2 dvvvvGaGivGlahA 16 
                 +vv+vG+Gi+ + +A
  MMETSP1137-20121227|2122_1 252 SVVIVGGGIIAVEFA 266
                 69*******998877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (349 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       157  (0.038274); expected 82.0 (0.02)
Passed bias filter:                      149  (0.0363237); expected 82.0 (0.02)
Passed Vit filter:                        58  (0.0141394); expected 4.1 (0.001)
Passed Fwd filter:                        24  (0.0058508); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              24  [number of targets reported over threshold]
# CPU time: 0.50u 0.15s 00:00:00.65 Elapsed: 00:00:00.84
# Mc/sec: 548.38
//
Query:       MMETSP1137-20121227|2123_1  [L=676]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (676 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        90  (0.0219405); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.14s 00:00:00.55 Elapsed: 00:00:00.55
# Mc/sec: 1622.27
//
Query:       MMETSP1137-20121227|2124_1  [L=200]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (200 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       103  (0.0251097); expected 82.0 (0.02)
Passed bias filter:                      100  (0.0243784); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.15s 00:00:00.35 Elapsed: 00:00:00.45
# Mc/sec: 586.62
//
Query:       MMETSP1137-20121227|2125_1  [L=377]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (377 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        81  (0.0197465); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.11s 00:00:00.38 Elapsed: 00:00:00.50
# Mc/sec: 995.20
//
Query:       MMETSP1137-20121227|2126_1  [L=74]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (74 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        88  (0.0214529); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.14s 00:00:00.27 Elapsed: 00:00:00.28
# Mc/sec: 348.83
//
Query:       MMETSP1137-20121227|2127_1  [L=70]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        81  (0.0197465); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.17s 00:00:00.28 Elapsed: 00:00:00.35
# Mc/sec: 263.98
//
Query:       MMETSP1137-20121227|2128_1  [L=220]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (220 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        60  (0.014627); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.14s 00:00:00.33 Elapsed: 00:00:00.35
# Mc/sec: 829.65
//
Query:       MMETSP1137-20121227|2129_1  [L=200]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (200 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        89  (0.0216967); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.12s 00:00:00.32 Elapsed: 00:00:00.32
# Mc/sec: 824.93
//
Query:       MMETSP1137-20121227|2131_1  [L=156]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (156 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        86  (0.0209654); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.17s 00:00:00.34 Elapsed: 00:00:00.38
# Mc/sec: 541.85
//
Query:       MMETSP1137-20121227|2132_1  [L=131]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (131 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       147  (0.0358362); expected 82.0 (0.02)
Passed bias filter:                      132  (0.0321794); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.16s 00:00:00.33 Elapsed: 00:00:00.32
# Mc/sec: 540.33
//
Query:       MMETSP1137-20121227|2133_1  [L=365]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.31    6.5  24.1       0.39    6.2  16.7    1.1  1  TIGR02168 SMC_prok_B: chromosome segregation protein SMC
       0.68    6.9   7.7       0.87    6.6   5.3    1.1  1  TIGR03752 conj_TIGR03752: integrating conjugative element protein, PFL_4705 family


Domain annotation for each model (and alignments):
>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2  16.7   0.00019      0.39     741     919 ..      42     225 ..      10     252 .. 0.41

  Alignments for each domain:
  == domain 1    score: 6.2 bits;  conditional E-value: 0.00019
   TIGR02168 741 ekeveqleerlaqlekeleeleeereeleeeleeaeeel....keaeeeieeleaeieqlkeelkalrealseleaeltelkeeaaekeerleslekeiaalekeleelee.qieeleeeiesleaeieeleeeleeleeeleellkekasleealaelreeleelse.elrelekkvkelerel 919
                 ++++ +  + +++++++   l+e++   +++ +e+++ +     +  +++ el a++e++ e++++++++l  l+a+l+++kee a+++e++++ e+e  ++++ +ee ++ q +e+ e +++ +++++  +++++++++++e +  e  s+++  +++r++l+ l++ el e ++ ++el+++l
  MMETSP1137-20121227|2133_1  42 TASHTRRLQAMDEARRTFDTLAERMPVFKQRAQETNKDKqiygPKMVARVLELVARVEAALERADEITAELVPLRAQLQAEKEERARQAEEMQQWEAERLRQTQAAEEEQRrQQREADEFVARQSDAVRLEQQRQRAAQRQAEGVGLEP-SSAALSRTIRKDLSLLQAlELLEKSTGAQELRDAL 225
                 22222222233333333333333333333333333322210112333444455555555555555555555555555555555555555555554444443333333333303333333333333344433444444444444444444.23333333333333333224445555555555554 PP

>> TIGR03752  conj_TIGR03752: integrating conjugative element protein, PFL_4705 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   5.3   0.00042      0.87      40     167 ..      70     196 ..      48     238 .. 0.67

  Alignments for each domain:
  == domain 1    score: 6.6 bits;  conditional E-value: 0.00042
   TIGR03752  40 aelspeelkalgiegdtpedtlrtlvaelkelrkelakleke....NeklkkenerlkkreesvderiqqaleaekkelkkekeqlkeeqakleelldelqkkledvaaekesseedlpvglGleegdkaqs 167
                 ++  +e++k   i g      +  lva++++  ++++++++e      +l++e+e+  ++ e++++  +++l++++ + +++++q++e+ + +++++d +  +le   ++++ +++ +  g+Gle+++ a s
  MMETSP1137-20121227|2133_1  70 KQRAQETNKDKQIYGPKMVARVLELVARVEAALERADEITAElvplRAQLQAEKEERARQAEEMQQWEAERLRQTQAAEEEQRRQQREADEFVARQSDAV--RLE---QQRQRAAQRQAEGVGLEPSSAALS 196
                 5667788888888999999999999999999888888777772222566777777777777777777777777655444444444333333333332222..343...444445555566888887776655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (365 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       341  (0.0831302); expected 82.0 (0.02)
Passed bias filter:                      116  (0.0282789); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.19s 00:00:00.57 Elapsed: 00:00:00.56
# Mc/sec: 860.29
//
Query:       MMETSP1137-20121227|2134_1  [L=104]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (104 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        84  (0.0204778); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.15s 00:00:00.30 Elapsed: 00:00:00.25
# Mc/sec: 549.07
//
Query:       MMETSP1137-20121227|2135_1  [L=457]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.1e-13   47.9   2.9    0.00036   16.5   0.0    5.7  5  TIGR00870 trp: transient-receptor-potential calcium channel protein


Domain annotation for each model (and alignments):
>> TIGR00870  trp: transient-receptor-potential calcium channel protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    1.0   0.0    0.0042        17     123     158 ..      44      79 ..      18      83 .. 0.84
   2 !    7.8   0.0   3.8e-05      0.16     128     158 ..      82     112 ..      77     116 .. 0.91
   3 !   16.5   0.0   8.7e-08   0.00036     130     163 ..     116     158 ..     112     173 .. 0.80
   4 !   16.1   0.0   1.2e-07   0.00048      56     161 ..     151     279 ..     149     283 .. 0.82
   5 !    3.5   0.0   0.00079       3.2     130     165 ..     314     350 ..     307     362 .. 0.89

  Alignments for each domain:
  == domain 1    score: 1.0 bits;  conditional E-value: 0.0042
   TIGR00870 123 estseftkgitalilAihkqnyeivklLlekgasve 158
                  + ++++   tali A +    ++v  L+++ga+v+
  MMETSP1137-20121227|2135_1  44 GMRTDESSAATALIAACQSGHPTLVAHLIASGADVH 79 
                 5667888899*************************8 PP

  == domain 2    score: 7.8 bits;  conditional E-value: 3.8e-05
   TIGR00870 128 ftkgitalilAihkqnyeivklLlekgasve 158
                   +g tal++A  +  + + klLl+ ga+++
  MMETSP1137-20121227|2135_1  82 TVNGWTALMVACRCGRLSVAKLLLNAGADIN 112
                 56899************************97 PP

  == domain 3    score: 16.5 bits;  conditional E-value: 8.7e-08
   TIGR00870 130 kgitalilAihkqnyeivklLlekgasve.........arakg 163
                 +  tal +A  +  ye+v+lL+++ga+++         + a +
  MMETSP1137-20121227|2135_1 116 PELTALAIASLHGHYELVELLVDRGADINqpsgggktaLMAAC 158
                 567*************************977777754433333 PP

  == domain 4    score: 16.1 bits;  conditional E-value: 1.2e-07
   TIGR00870  56 rsallsaaieneneelteLllkke.....egevGdalLhaiskelvdaveailllllkaarksltls....................elandestseftkgitalilAihkqnyeivklLlekgasveara 161
                 ++al+ aa +    +l+eLll +       ++ G ++L+a+  e +  v ++ll + ++  +    +                     + n+e   e   g tali A  +    +v++L+++ga+v+ +a
  MMETSP1137-20121227|2135_1 151 KTALM-AACQKGXTDLAELLLDYGaevhqAAQDGATALLAACYEGHVPVVDVLLDRGAILDQGA-KNgrtalmlaaryghaaltarlLHRNAEVDREQLGGGTALIFASXHGHPVVVQMLIDRGARVNHAA 279
                 56788.99999999*******9999999889999999999988777766666665555543322.2234678999**********988889999999999***************************9655 PP

  == domain 5    score: 3.5 bits;  conditional E-value: 0.00079
   TIGR00870 130 kgitalilAihkqnyeivklLlekgasve.arakgde 165
                  g t+l+ A    +  +v++Ll+++a +e a+a g+ 
  MMETSP1137-20121227|2135_1 314 DGTTPLMAACRGGKPRVVQMLLDSRAVLEaAKADGET 350
                 699**************************88998875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (457 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       119  (0.0290102); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.15s 00:00:00.56 Elapsed: 00:00:00.31
# Mc/sec: 1945.77
//
Query:       MMETSP1137-20121227|2136_1  [L=133]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (133 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        48  (0.0117016); expected 82.0 (0.02)
Passed bias filter:                       35  (0.00853242); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.35
# Mc/sec: 501.56
//
Query:       MMETSP1137-20121227|2137_1  [L=75]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (75 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        37  (0.00901999); expected 82.0 (0.02)
Passed bias filter:                       36  (0.00877621); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.18s 00:00:00.31 Elapsed: 00:00:00.30
# Mc/sec: 329.97
//
Query:       MMETSP1137-20121227|2138_1  [L=105]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (105 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        53  (0.0129205); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.15s 00:00:00.29 Elapsed: 00:00:00.23
# Mc/sec: 602.56
//
Query:       MMETSP1137-20121227|2139_1  [L=207]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0026   15.7   0.0       0.27    9.2   0.0    2.7  3  TIGR00411 redox_disulf_1: redox-active disulfide protein 1


Domain annotation for each model (and alignments):
>> TIGR00411  redox_disulf_1: redox-active disulfide protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    3.4   0.0    0.0043        18       3      34 ..       9      40 ..       7      42 .. 0.79
   2 ?   -1.2   0.0      0.11   4.7e+02      30      50 ..     132     152 ..     130     162 .. 0.78
   3 !    9.2   0.0   6.5e-05      0.27      39      80 ..     161     202 ..     146     204 .. 0.77

  Alignments for each domain:
  == domain 1    score: 3.4 bits;  conditional E-value: 0.0043
   TIGR00411  3 ielftsPtCPyCPkakkvveevakeegdkvev 34
                +e+    +CP+C   k+  e +  + g  v+v
  MMETSP1137-20121227|2139_1  9 VEVISDVICPWCWIGKRNXESAITQSGLPVDV 40
                67888899*****9999988887777766665 PP

  == domain 2    score: -1.2 bits;  conditional E-value: 0.11
   TIGR00411  30 dkvevekinvmedlkkaleyG 50 
                 d +    i+   d++ka+ y 
  MMETSP1137-20121227|2139_1 132 DNLRLAAIEAGLDPEKAIAYA 152
                 556667788888999999986 PP

  == domain 3    score: 9.2 bits;  conditional E-value: 6.5e-05
   TIGR00411  39 vmedlkkaleyGimavPaivingkvefvGaPdkeeLveaikk 80 
                 ++e+  +    G+ +vP  ++ngk  f Ga   e +++a+++
  MMETSP1137-20121227|2139_1 161 IKEEALQNSASGVSGVPFFIVNGKPVFSGAQPVETILHALRQ 202
                 44444444557*******************988888888775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (207 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        81  (0.0197465); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.20u 0.14s 00:00:00.34 Elapsed: 00:00:00.32
# Mc/sec: 853.80
//
Query:       MMETSP1137-20121227|2140_1  [L=382]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (382 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       243  (0.0592394); expected 82.0 (0.02)
Passed bias filter:                       99  (0.0241346); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.16s 00:00:00.44 Elapsed: 00:00:00.45
# Mc/sec: 1120.44
//
Query:       MMETSP1137-20121227|2141_1  [L=357]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (357 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        64  (0.0156021); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.18s 00:00:00.43 Elapsed: 00:00:00.37
# Mc/sec: 1273.52
//
Query:       MMETSP1137-20121227|2142_1  [L=85]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (85 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        59  (0.0143832); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.15s 00:00:00.28 Elapsed: 00:00:00.45
# Mc/sec: 249.31
//
Query:       MMETSP1137-20121227|2143_1  [L=653]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        1.2    5.6  21.4        2.6    4.5  14.8    1.5  1  TIGR01645 half-pint: poly-U binding splicing factor, half-pint family


Domain annotation for each model (and alignments):
>> TIGR01645  half-pint: poly-U binding splicing factor, half-pint family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5  14.8   0.00064       2.6     283     376 ..     341     416 ..     319     456 .. 0.50

  Alignments for each domain:
  == domain 1    score: 4.5 bits;  conditional E-value: 0.00064
   TIGR01645 283 allqPatvsalPaaaavaaaaatakitaaeavagaavlglraqspatassslvtdieakavvssakkeaeevpalpqaapavlkdeviteekPv 376
                 a ++ a+++a  aaaa aaaaa+a   aa a+a+aav+++ a + a a   + t                 v  +++a+ +v+ +ev+++  Pv
  MMETSP1137-20121227|2143_1 341 A-AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAVPSMPAMTAAPAVVGVRT-----------------VVGMSPAVFSVVVEEVVEHRVPV 416
                 1.1112222222222222222333333333333344444333333333333444.................44445555555555555555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (653 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       367  (0.0894686); expected 82.0 (0.02)
Passed bias filter:                      100  (0.0243784); expected 82.0 (0.02)
Passed Vit filter:                        25  (0.00609459); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.17s 00:00:00.70 Elapsed: 00:00:00.75
# Mc/sec: 1149.19
//
Query:       MMETSP1137-20121227|2144_1  [L=528]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   1.7e-120  401.3  10.8     2e-120  401.1   7.5    1.0  1  TIGR00487 IF-2: translation initiation factor IF-2
    8.8e-38  127.9   7.2      2e-33  113.5   1.9    3.1  2  TIGR00491 aIF-2: translation initiation factor aIF-2
    1.2e-29  101.2   4.2    1.9e-29  100.7   2.9    1.2  1  TIGR00475 selB: selenocysteine-specific translation elongation factor
    3.3e-28   96.4   0.1    5.8e-28   95.6   0.1    1.4  1  TIGR00231 small_GTP: small GTP-binding protein domain
    2.7e-19   66.8   5.5      7e-18   62.1   3.8    2.1  1  TIGR01393 lepA: GTP-binding protein LepA
    7.2e-19   65.2   6.1    9.3e-17   58.3   4.2    2.8  1  TIGR01394 TypA_BipA: GTP-binding protein TypA/BipA
    2.4e-12   44.1   6.0    2.4e-10   37.5   4.2    2.2  1  TIGR00485 EF-Tu: translation elongation factor Tu
    7.1e-12   42.1   0.1      1e-11   41.5   0.1    1.2  1  TIGR00484 EF-G: translation elongation factor G
    7.3e-12   42.3   0.0    1.8e-11   41.0   0.0    1.5  1  TIGR00503 prfC: peptide chain release factor 3
      1e-11   42.5   7.0    8.2e-09   33.0   1.4    2.2  2  TIGR03680 eif2g_arch: translation initiation factor 2, gamma subunit
    1.6e-10   38.4   0.4    4.7e-10   36.9   0.3    1.6  1  TIGR03594 GTPase_EngA: ribosome-associated GTPase EngA
    6.4e-10   36.2   0.3    9.5e-10   35.7   0.2    1.2  1  TIGR03918 GTP_HydF: [FeFe] hydrogenase H-cluster maturation GTPase HydF
    2.6e-08   30.3   2.4    5.4e-07   25.9   1.6    2.1  1  TIGR00490 aEF-2: translation elongation factor aEF-2
    3.1e-08   30.3   7.4    1.2e-07   28.4   2.3    2.6  2  TIGR00483 EF-1_alpha: translation elongation factor EF-1, subunit alpha
    8.1e-08   29.5   0.1    1.4e-07   28.8   0.1    1.4  1  TIGR02034 CysN: sulfate adenylyltransferase, large subunit
    3.6e-06   24.4   0.1    6.5e-06   23.5   0.1    1.4  1  TIGR00436 era: GTP-binding protein Era
    1.2e-05   22.9   0.1    0.00096   16.7   0.1    2.4  1  TIGR03598 GTPase_YsxC: ribosome biogenesis GTP-binding protein YsxC
    1.2e-05   22.4   0.1      2e-05   21.7   0.1    1.2  1  TIGR00450 mnmE_trmE_thdF: tRNA modification GTPase TrmE
    0.00028   19.0   0.3     0.0019   16.3   0.2    2.1  1  TIGR02528 EutP: ethanolamine utilization protein, EutP
    0.00043   16.9   0.3    0.00061   16.4   0.2    1.2  1  TIGR00437 feoB: ferrous iron transport protein B
    0.00046   17.0   0.2     0.0017   15.2   0.1    1.8  1  TIGR03156 GTP_HflX: GTP-binding protein HflX
  ------ inclusion threshold ------
      0.017   12.3   0.8      0.083   10.0   0.1    2.1  2  TIGR03018 pepcterm_TyrKin: exopolysaccharide/PEPCTERM locus tyrosine autokinase


Domain annotation for each model (and alignments):
>> TIGR00487  IF-2: translation initiation factor IF-2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  401.1   7.5  1.1e-122    2e-120       4     318 ..     206     528 .]     203     528 .] 0.95

  Alignments for each domain:
  == domain 1    score: 401.1 bits;  conditional E-value: 1.1e-122
   TIGR00487   4 ekivikesltvselaeklnvkesdiikkllllGvmvtinqvldketielvaeelgvkvevrvtleeeeveee........eedsedkkeerpPvvtimGhvDhGktsLLdsirktkvaegeaGGitqhiGayqvekedkkkitflDtPGheaftsmrarGakvtDivvlvvaadDGvkpqtieaiehakaanvPiivainkiDkpeanpDrvkqelseyglvpeewGGetifvpvsalkgkgideLldaiLlqseveelkanknkqakgvvieakldkgrGpvatvlvqeGtLkvGDivvvgaayGkvramidekGksvkeag 318
                  k++i +s+tv +la   n+ +++++k l++ Gv++ i+q +d +t++ +ae++g +v+     ++e ++          ++d+++++ +rpPvvt+mGhvDhGktsLLd +r+ +va+geaGGitqhiGa  +   d+++itf+DtPGh+af++mr+rGa+vtDivvlvvaadDGvk+qti +i+ akaanvPiivainkiDkp+++p +vk +l e+++v e++GG++  v vsa++ +++  Ll++iLlq++v++lkan+++ a+g v+ea+   g+G+vat lvq+GtL+vGD+vv+ga++G+vr ++  +G +++eag
  MMETSP1137-20121227|2144_1 206 AKVTIGDSITVGDLAAACNIGVAEVVKDLMKRGVLASITQSIDGDTAAAIAEGVGAEVSRAGDDDAEHLDLAdeawgvldDDDASADLLRRPPVVTVMGHVDHGKTSLLDALRSSDVAAGEAGGITQHIGASSISAPDGQVITFIDTPGHAAFSEMRSRGANVTDIVVLVVAADDGVKEQTISSIKAAKAANVPIIVAINKIDKPNCDPSQVKTQLLEHEVVLEQFGGDVLSVEVSAKERTNLXGLLEQILLQADVLDLKANPKRAAQGSVVEARQVVGQGAVATALVQKGTLRVGDVVVAGAQWGRVRRLQTGRGVQIEEAG 528
                 6899******************************************************9987777666554311111111457788899**************************************************************************************************************************************************************************************************************************************9985 PP

>> TIGR00491  aIF-2: translation initiation factor aIF-2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  113.5   1.9   1.1e-35     2e-33       3     148 ..     296     424 ..     294     440 .. 0.90
   2 !    9.8   0.1   0.00028     0.052     222     267 ..     463     508 ..     434     517 .. 0.82

  Alignments for each domain:
  == domain 1    score: 113.5 bits;  conditional E-value: 1.1e-35
   TIGR00491   3 rsPivavlGhvdhGkttlldkirktrvakreaGgitqhiGaseiPidvikrlcgdllkklkidlkiPGllvidtPGheaftslrkrGGaladiailvvdineGfkpqtveavnilrqlktPfvvaankidripGwkskegkfiles 148
                 r P+v+v+GhvdhGkt+lld +r + va+ eaGgitqhiGas i         g++            + +idtPGh af+++r rG  ++di +lvv   +G+k+qt  +++  +  ++P +va nkid+ +   s+ ++++le 
  MMETSP1137-20121227|2144_1 296 RPPVVTVMGHVDHGKTSLLDALRSSDVAAGEAGGITQHIGASSISAPD-----GQV------------ITFIDTPGHAAFSEMRSRGANVTDIVVLVVAADDGVKEQTISSIKAAKAANVPIIVAINKIDKPNCDPSQVKTQLLEH 424
                 779***************************************986432.....222............469***********************************************************9988888877777765 PP

  == domain 2    score: 9.8 bits;  conditional E-value: 0.00028
   TIGR00491 222 rlklevegkakGtilevkeekGlGvtidaiiydGilkkgdilvval 267
                  lk + +  a+G ++e ++  G G  + a++  G+l+ gd++v ++
  MMETSP1137-20121227|2144_1 463 DLKANPKRAAQGSVVEARQVVGQGAVATALVQKGTLRVGDVVVAGA 508
                 467777889*******************************999765 PP

>> TIGR00475  selB: selenocysteine-specific translation elongation factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  100.7   2.9     1e-31   1.9e-29       3     225 ..     300     518 ..     299     528 .] 0.88

  Alignments for each domain:
  == domain 1    score: 100.7 bits;  conditional E-value: 1e-31
   TIGR00475   3 iataGHvDHGKttLlkaltgidadrlPeEkKRGltiDlGyaylpled.kvlgliDvPGHekflknalagvggidaalLvvdadeGvkaqtkEHLavlkllgikelivvltKaDrvdeeevkevEeelkeileeeeflknakivkvsAktGqGieeLkkelknLlesldak.dkqkplrlaiDraFkvKGaGtvvtGtafsGevkvgDelvlepinkkvrvkalqa 225
                 ++++GHvDHGKt+Ll al   d +     +  G+t  +G +++  +d +v+++iD PGH  f +    g +  d ++Lvv+ad+Gvk qt+  ++ +k  +++ +iv+++K+D+ + +  +   ++l++    e+f  +   v vsAk+   +  L ++++  ++ ld k + ++  +  + +a +v G G v t  + +G+ +vgD +v     +  rv+ lq+
  MMETSP1137-20121227|2144_1 300 VTVMGHVDHGKTSLLDALRSSDVA---AGEAGGITQHIGASSISAPDgQVITFIDTPGHAAFSEMRSRGANVTDIVVLVVAADDGVKEQTISSIKAAKAANVP-IIVAINKIDKPNCDPSQVKTQLLEHEVVLEQFGGDVLSVEVSAKERTNLXGLLEQILLQADVLDLKaNPKRAAQGSVVEARQVVGQGAVATALVQKGTLRVGDVVVAG--AQWGRVRRLQT 518
                 7789*************9865544...45678******************************999999***********************************.**********9988544444444444445566667999***************************98889999999***************************87766..78889999986 PP

>> TIGR00231  small_GTP: small GTP-binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.6   0.1   3.1e-30   5.8e-28       4     158 ..     298     451 ..     295     456 .. 0.85

  Alignments for each domain:
  == domain 1    score: 95.6 bits;  conditional E-value: 3.1e-30
   TIGR00231   4 ikivivGhvdvGKstLlnsllknkisiteskpgvtrdyvteqiee.dGktykvnllDTaGqedfdairrlyvreverslevvdivilvldveeglekqtkeiiheakkkgvpiilvvnKiDlkd........dlktkvkslfaklnaep.iielsaetgknidkl 158
                   ++++Ghvd+GK++Ll+ l+  +++  e+  g+t+++ + +i   dG    ++++DT+G+++f        ++++r + v+div+lv+++++g+++qt + i++ak+++vpii+++nKiD+ +        +l++++  ++++ ++    +e+sa++++n+ +l
  MMETSP1137-20121227|2144_1 298 PVVTVMGHVDHGKTSLLDALRSSDVAAGEA-GGITQHIGASSISApDG--QVITFIDTPGHAAF-------SEMRSRGANVTDIVVLVVAADDGVKEQTISSIKAAKAANVPIIVAINKIDKPNcdpsqvktQLLEHEV-VLEQFGGDVlSVEVSAKERTNLXGL 451
                 679*********************999999.9*********9986488..58************.......9****************************************************999944444444433.4555555555778888888887766 PP

>> TIGR01393  lepA: GTP-binding protein LepA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.1   3.8   3.7e-20     7e-18      70     222 ..     345     504 ..     298     511 .. 0.87

  Alignments for each domain:
  == domain 1    score: 62.1 bits;  conditional E-value: 3.7e-20
   TIGR01393  70 yvlnlidtPGhvdfsyevsrslaaceGalllvdaaqGveaqtlanvylalekdleiiPvinkidlPsadvervkkei.eeviGlda..ee..ailvsaktGigieelleaivkk..vpaPkgdkeaplkalifdsvydayrGvvvyvrvveGkikkgdki 222
                  v+ +idtPGh+ fs   sr  + ++ ++l+v a  Gv+ qt++ +  a   ++ ii  inkid P+ d+ +vk+++ e+ + l++   +  ++ vsak+ +++  lle+i+ +  v   k +++ + +  ++++     +G+v+   v +G++++gd +
  MMETSP1137-20121227|2144_1 345 QVITFIDTPGHAAFSEMRSRGANVTDIVVLVVAADDGVKEQTISSIKAAKAANVPIIVAINKIDKPNCDPSQVKTQLlEHEVVLEQfgGDvlSVEVSAKERTNLXGLLEQILLQadVLDLKANPKRAAQGSVVEARQVVGQGAVATALVQKGTLRVGDVV 504
                 5799**********************************************************************9963666777652223226889***************96522677899999999****************************9977 PP

>> TIGR01394  TypA_BipA: GTP-binding protein TypA/BipA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.3   4.2     5e-19   9.3e-17       4     237 ..     300     508 ..     298     526 .. 0.74

  Alignments for each domain:
  == domain 1    score: 58.3 bits;  conditional E-value: 5e-19
   TIGR01394   4 iaiiahvDhGkttlvDklLkqsgvlrekeeveervmDsndlererGitilakntavkykd.tkinivDtPGhaDfGGevervlsmvdgvlllvDaseGplpqtrfvlkkalelglkpivvinkiDrpdarpeevvdevfdLfvelgaddeqldfpvvyasakeGvasleeedesedleplfdailehvpaP..kadkdeplqllvttldydeylGriaigrverGkvkkgqqvallk 237
                 + ++ hvDhGkt l+D+l + s+v                     Git    +++++  d   i  +DtPGha f     r  ++ d v+l+v a +G+  qt   +k a +++  +iv inkiD+p+++p++v  + ++  v l+    q           + ++ + +++e+++l  l++ il + +    ka+++ + q  v++  +    G +a++ v++G+++ g+ v +  
  MMETSP1137-20121227|2144_1 300 VTVMGHVDHGKTSLLDAL-RSSDVAAG---------------EAGGITQHIGASSISAPDgQVITFIDTPGHAAFSEMRSRGANVTDIVVLVVAADDGVKEQTISSIKAAKAANVPIIVAINKIDKPNCDPSQVKTQLLEHEVVLE----QFG--------GDVLSVEVSAKERTNLXGLLEQILLQADVLdlKANPKRAAQGSVVEARQVVGQGAVATALVQKGTLRVGDVVVAGA 508
                 68999***********96.55553322...............2358998888888887653899**********************************************************************998766444333....332........2223333455566788888888876655441144455555555544444444556888888888888888876655 PP

>> TIGR00485  EF-Tu: translation elongation factor Tu
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.5   4.2   1.3e-12   2.4e-10      15     243 ..     300     504 ..     294     522 .. 0.73

  Alignments for each domain:
  == domain 1    score: 37.5 bits;  conditional E-value: 1.3e-12
   TIGR00485  15 vgtighvdhgkttltaaittvlakegkaaakkydeidkapeekargit..intahveyetekrhyahvdcpghadyvknmitgaaqmdgailvvsaadgpmpqtrehillarqvgvpklvvflnkvdlvdde..el.lelvelevrellseydfpgddvpivrgsalkalegdaeweekilelmeavdeyiptperevdkpfllaiedvfsitgrgtvvtgrvergevkvgeev 243
                 v  +ghvdhgkt+l  a+                    a    a git  i ++ +    + +  + +d pgha +      ga   d  +lvv+a dg+  qt   i  a+   vp  +v +nk+d  + +  ++  +l+e ev  +l+  +f g dv  v+ sa +  +      e+il l + v +   +p+r+ + + +    +   + g+g+v+t  v++g+++vg+ v
  MMETSP1137-20121227|2144_1 300 VTVMGHVDHGKTSLLDALRSSD---------------VAAG-EAGGITqhIGASSIS-APDGQVITFIDTPGHAAFSEMRSRGANVTDIVVLVVAADDGVKEQTISSIKAAKAANVPI-IVAINKIDKPNCDpsQVkTQLLEHEV--VLE--QFGG-DVLSVEVSAKERTNLX-GLLEQIL-LQADVLDLKANPKRAAQGSVV----EARQVVGQGAVATALVQKGTLRVGDVV 504
                 4567888998888877764322...............2222.245666223344443.345667899**********9999************************************5.5679***9865331133145666666..454..5666.7888899997766554.4556666.44556667899***9988654....556789******************976 PP

>> TIGR00484  EF-G: translation elongation factor G
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.5   0.1   5.6e-14     1e-11      59     153 ..     328     423 ..     299     473 .. 0.85

  Alignments for each domain:
  == domain 1    score: 41.5 bits;  conditional E-value: 5.6e-14
   TIGR00484  59 rGititsaattvewkd.frinlidtPGhvdftveverslrvldGavavldavaGvepqsetvwrqakkyevPrivfvnkmdkiGanflkvveqlks 153
                  Git    a++++  d   i  idtPGh  f+    r   v d  v+v+ a  Gv+ q+++  + ak  +vP iv +nk+dk   ++ +v++ql +
  MMETSP1137-20121227|2144_1 328 GGITQHIGASSISAPDgQVITFIDTPGHAAFSEMRSRGANVTDIVVLVVAADDGVKEQTISSIKAAKAANVPIIVAINKIDKPNCDPSQVKTQLLE 423
                 578877777777665527799***********999*******************************************************999854 PP

>> TIGR00503  prfC: peptide chain release factor 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.0   0.0   9.4e-14   1.8e-11      79     152 ..     344     417 ..     329     431 .. 0.91

  Alignments for each domain:
  == domain 1    score: 41.0 bits;  conditional E-value: 9.4e-14
   TIGR00503  79 dklvnlldtpGhedfsedtyrtltavdsalmvidaakGveertrkllevtrlrdlpiltflnkldrdirdplel 152
                 ++++ ++dtpGh  fse   r    +d +++v+ a  Gv+e+t+  ++ ++  ++pi+  +nk+d++  dp ++
  MMETSP1137-20121227|2144_1 344 GQVITFIDTPGHAAFSEMRSRGANVTDIVVLVVAADDGVKEQTISSIKAAKAANVPIIVAINKIDKPNCDPSQV 417
                 67899*****************************************************************9765 PP

>> TIGR03680  eif2g_arch: translation initiation factor 2, gamma subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.1   0.2   9.5e-05     0.018       8      26 ..     300     318 ..     296     340 .. 0.88
   2 !   33.0   1.4   4.4e-11   8.2e-09      82     193 ..     346     456 ..     329     507 .. 0.80

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 9.5e-05
   TIGR03680   8 iglvGhvDhGkttlvkalt 26 
                 ++++GhvDhGkt+l  al 
  MMETSP1137-20121227|2144_1 300 VTVMGHVDHGKTSLLDALR 318
                 7899***********9996 PP

  == domain 2    score: 33.0 bits;  conditional E-value: 4.4e-11
   TIGR03680  82 kvsfvDaPGhetLmatmlsGaalmdgalLviaaneevPqpqtkehlvaleiigiknivivqnkidlvskekalenyeei.kefvkgtvaenapiiPvsalkkvnidvlleale 193
                  ++f+D+PGh ++      Ga + d  +Lv+aa++ v + qt   ++a +  ++  i+++ nkid  + +    + + + +e+v +++  +   + vsa++++n+  lle++ 
  MMETSP1137-20121227|2144_1 346 VITFIDTPGHAAFSEMRSRGANVTDIVVLVVAADDGV-KEQTISSIKAAKAANV-PIIVAINKIDKPNCDPSQVKTQLLeHEVVLEQFGGDVLSVEVSAKERTNLXGLLEQIL 456
                 699********99988889******************.9***********9998.5999******87665544444443157788889999999**************99874 PP

>> TIGR03594  GTPase_EngA: ribosome-associated GTPase EngA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.9   0.3   2.5e-12   4.7e-10     148     347 ..     272     460 ..     244     473 .. 0.77

  Alignments for each domain:
  == domain 1    score: 36.9 bits;  conditional E-value: 2.5e-12
   TIGR03594 148 gikdLldeileelpeeeeeeeeeeeeepikiaiiGrpNvGKStLvNallgeervivsdiaGtTrDsidievev.kgkkylliDTAGirrkkkveekveklsvlrtlkaieradvvllvlDategiseqDlkiaglileegkalvivvNKwDlv..kdekeleelkkeleeklkflkfapivfiSAltgkgveklleaikevye 347
                 +  dL de    l++++ +++    ++p  ++++G    GK +L+ al  ++ v + +  G+T+    ++++  +g+ +++iDT G             +s +r+  a +  d+v+lv+ a +g++eq  + ++ ++ ++ ++++++NK+D+   + ++ +++l ++     +f   +  v +SA++++++  lle+i   ++
  MMETSP1137-20121227|2144_1 272 EHLDLADEAWGVLDDDDASADLL--RRPPVVTVMGHVDHGKTSLLDALRSSD-VAAGEAGGITQHIGASSISApDGQVITFIDTPGH----------AAFSEMRSRGA-NVTDIVVLVVAADDGVKEQTISSIKAAKAANVPIIVAINKIDKPncDPSQVKTQLLEHEVVLEQFGGDVLSVEVSAKERTNLXGLLEQILLQAD 460
                 55567777777776666655555..66889****************987666.7789999****99988887637899*******94..........35666776554.789****************************************9644444444444443344455578999***************99976555 PP

>> TIGR03918  GTP_HydF: [FeFe] hydrogenase H-cluster maturation GTPase HydF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.7   0.2   5.1e-12   9.5e-10      10     163 ..     300     455 ..     295     483 .. 0.72

  Alignments for each domain:
  == domain 1    score: 35.7 bits;  conditional E-value: 5.1e-12
   TIGR03918  10 ialfGrrNaGKSsliNaltgqdvaivsdvpGtTtDpvekamEllplGpv.vliDTaGldDegeLGelRvektrevlektdlallvvdaeaeleeleeelleelkekkipvivvlnkidlkeeeke........keklekkkeeev..vlvsakekegieelkeal 163
                 ++++G+   GK sl+ al   dva  +  +G  t  +  +   +p G v ++iDT+G    ++++e+R + +    + td+++lvv a+ +++e+  + ++++k+ ++p+iv++nkid+ + + +        +e + ++++ +v  v vsake++++  l e++
  MMETSP1137-20121227|2144_1 300 VTVMGHVDHGKTSLLDALRSSDVA--AGEAGGITQHIGASSISAPDGQViTFIDTPGH---AAFSEMRSRGA----NVTDIVVLVVAADDGVKEQTISSIKAAKAANVPIIVAINKIDKPNCDPSqvktqlleHEVVLEQFGGDVlsVEVSAKERTNLXGLLEQI 455
                 7899****************9998..4556666666666666666676528******5...67888887655....579***************************************98876442221122112222222222211445556666666655555 PP

>> TIGR00490  aEF-2: translation elongation factor aEF-2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.9   1.6   2.9e-09   5.4e-07      67     150 ..     329     409 ..     291     427 .. 0.78

  Alignments for each domain:
  == domain 1    score: 25.9 bits;  conditional E-value: 2.9e-09
   TIGR00490  67 gitidaanvsmvheyegneylinlidtpghvdfggdvtramravdgaivvvcavegvmpqtetvlrqalkenvkpvlfinkvdr 150
                 git +    s +   +g+  +i +idtpgh  f    +r     d +++vv+a +gv  qt + ++ a   nv  ++ ink+d+
  MMETSP1137-20121227|2144_1 329 GITQHIGA-SSISAPDGQ--VITFIDTPGHAAFSEMRSRGANVTDIVVLVVAADDGVKEQTISSIKAAKAANVPIIVAINKIDK 409
                 55544333.333444554..89************************************************************97 PP

>> TIGR00483  EF-1_alpha: translation elongation factor EF-1, subunit alpha
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.1     0.059        11      10      25 ..     300     315 ..     297     321 .. 0.85
   2 !   28.4   2.3   6.4e-10   1.2e-07      70     260 ..     329     504 ..     321     510 .. 0.70

  Alignments for each domain:
  == domain 1    score: 2.2 bits;  conditional E-value: 0.059
   TIGR00483  10 vafighvdsgkstlvg 25 
                 v+++ghvd+gk++l+ 
  MMETSP1137-20121227|2144_1 300 VTVMGHVDHGKTSLLD 315
                 789********98875 PP

  == domain 2    score: 28.4 bits;  conditional E-value: 6.4e-10
   TIGR00483  70 gvtidvahkkfetdk.yevtivdapghrdfiknmitgasqadaavlvvavddgelevqpqtrehvllartlgikqlivainkmdsvnydeekfeelkkevsellkkvgykpdevefipvsaykgdnvvkksenapwykgktllealdkleapekpvdkplripiqdvysitgvgtvpvgrvetgvlkkgekv 260
                 g+t  +    + ++    +t +d+pgh  f      ga  +d  vlvva+ddg   v+ qt   +  a++  +  +ivaink+d+ n d ++ +    e   +l + g ++ +v    vsa +  n+    e++         + ld   +p++ ++      + +  ++ g g+v    v+ g l++g++v
  MMETSP1137-20121227|2144_1 329 GITQHIGASSISAPDgQVITFIDTPGHAAFSEMRSRGANVTDIVVLVVAADDG---VKEQTISSIKAAKAANV-PIIVAINKIDKPNCDPSQVKTQLLEHEVVLEQFGGDVLSV---EVSAKERTNLXGLLEQILLQ-----ADVLDLKANPKRAAQGS----VVEARQVVGQGAVATALVQKGTLRVGDVV 504
                 66666666666655414579************99******************9...9*******999999888.599************9998877777777777777655444...45665555555544443221.....23344444454444433....33444555666666666666666666665 PP

>> TIGR02034  CysN: sulfate adenylyltransferase, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.8   0.1   7.2e-10   1.4e-07      84     184 ..     349     447 ..     304     455 .. 0.79

  Alignments for each domain:
  == domain 1    score: 28.8 bits;  conditional E-value: 7.2e-10
   TIGR02034  84 vadtPGheqytrnmatgastadlavllvdarkGvleqtrrhsiiasllGikhvvlavnkidlvdydeevfeeikkdylalaeklgvsdvtviPlsalkGdn 184
                   dtPGh  +      ga  +d++vl+v a  Gv eqt      a       +++a+nkid  + d +  ++   ++  + e++g  dv  + +sa++  n
  MMETSP1137-20121227|2144_1 349 FIDTPGHAAFSEMRSRGANVTDIVVLVVAADDGVKEQTISSIKAAKAA-NVPIIVAINKIDKPNCDPSQVKTQLLEHEVVLEQFGG-DVLSVEVSAKERTN 447
                 57************************************8755555544.45799*******9999988777766677777777764.56667777776666 PP

>> TIGR00436  era: GTP-binding protein Era
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.5   0.1   3.5e-08   6.5e-06       3     155 ..     300     451 ..     298     470 .. 0.70

  Alignments for each domain:
  == domain 1    score: 23.5 bits;  conditional E-value: 3.5e-08
   TIGR00436   3 vailGrpnvGKSTLlNkllgqkisivSpkaqTTrnrisgiltegasq.iifiDtPGlhekkhklnellvkeirkalsevdlilfvvdsdeknke.dellleklqklkapvvlalnkldnk..ekdkllelidkea.sllefk.ei..veisalkgenveel 155
                 v+++G+ + GK  Ll  l   +++        T++   + +  +  q i+fiDtPG    + ++ e+ ++ ++      d++++vv +d+  ke     ++  + ++ p+++a+nk+d+    + ++ +++ +++  l++f  ++  ve+sa++ +n+  l
  MMETSP1137-20121227|2144_1 300 VTVMGHVDHGKTSLLDALRSSDVAAGE-AGGITQHIGASSISAPDGQvITFIDTPG----HAAFSEMRSRGAN----VTDIVVLVVAADDGVKEqTISSIKAAKAANVPIIVAINKIDKPncDPSQVKTQLLEHEvVLEQFGgDVlsVEVSAKERTNLXGL 451
                 899***************999988654.45555555455555566666********....4456666666554....4599**********9993333456678888999********9745455555555555505555658661156666666665554 PP

>> TIGR03598  GTPase_YsxC: ribosome biogenesis GTP-binding protein YsxC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.1   5.1e-06   0.00096      21     185 ..     300     455 ..     292     456 .. 0.74

  Alignments for each domain:
  == domain 1    score: 16.7 bits;  conditional E-value: 5.1e-06
   TIGR03598  21 iafaGrSNvGKSsliNaLtnrkklartSktPGrTqlinffev....neelrlvDlPGYGyakvskeekekwqklieeYLekrenLkgvvllvDirhelkelDlellellkeakipvlvvltKaDklk..kselkkalkkvkkelkkeeekvevllfSslkkegieelkael 185
                 + ++G    GK sl+ aL ++   + + +  G Tq+i   ++     + ++++D PG+  a+ s+ +++             +    vvl+v +  ++ke+  + ++ +k+a++p++v ++K+Dk +   s++k++l + +  l++   +v  + +S+++++++  l +++
  MMETSP1137-20121227|2144_1 300 VTVMGHVDHGKTSLLDALRSSD--VAAGEAGGITQHIGASSIsapdGQVITFIDTPGH--AAFSEMRSRG-----------ANVTDIVVLVVAADDGVKEQTISSIKAAKAANVPIIVAINKIDKPNcdPSQVKTQLLEHEVVLEQFGGDVLSVEVSAKERTNLXGLLEQI 455
                 6778888889999999988877..4557788999999888885443335688999974..5555444332...........2333568888999999****************************7722456666666666677777777788889999999988877765 PP

>> TIGR00450  mnmE_trmE_thdF: tRNA modification GTPase TrmE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.7   0.1     1e-07     2e-05     204     329 ..     292     410 ..     278     456 .. 0.83

  Alignments for each domain:
  == domain 1    score: 21.7 bits;  conditional E-value: 1e-07
   TIGR00450 204 eklkdglklaivGktNvGKSSLlNallkkdraiVsdikGttRDvvEedlel.eGilvkllDtAGiReaadkvEklGiekslkaikeadlvlyvlDaskpltkdd.eliitlkkkkkdlllvlNKiDLa 329
                 + l+ +  ++++G++  GK SLl al + d a   +  G t  +  +++   +G ++  +Dt G   +a + E     +s+  ++ +d+v++v+ a  + +++  + i+  k ++ ++++ +NKiD  
  MMETSP1137-20121227|2144_1 292 DLLRRPPVVTVMGHVDHGKTSLLDALRSSDVAA-GEAGGITQHIGASSISApDGQVITFIDTPG---HAAFSE----MRSRG-ANVTDIVVLVVAADDGVKEQTiSSIKAAKAANVPIIVAINKIDKP 410
                 67888999**********************985.7889******999997549***********...455544....36665.5789************9777678899999**************65 PP

>> TIGR02528  EutP: ethanolamine utilization protein, EutP
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.2     1e-05    0.0019       3     106 ..     300     415 ..     299     447 .. 0.67

  Alignments for each domain:
  == domain 1    score: 16.3 bits;  conditional E-value: 1e-05
   TIGR02528   3 imliGsvgcGkttLtqaLkgeeikykk....tqaveykd.ka........iDtPGeylenrryYsaLlvtaadadvivlvqsatd..eesllspgfasifak.eviglvtkidlaeadke 106
                 + ++G+v+ Gkt+L +aL+  ++ +      tq +  ++ +a        iDtPG       + +     a  +d++vlv  a+d  +e+++s+  a+  a+ + i  + kid ++ d +
  MMETSP1137-20121227|2144_1 300 VTVMGHVDHGKTSLLDALRSSDVAAGEaggiTQHIGASSiSApdgqvitfIDTPGHA----AFSEMRSRGANVTDIVVLVVAADDgvKEQTISSIKAAKAANvPIIVAINKIDKPNCDPS 415
                 579********************9976233356554432211112222237777743....333333334444589999999988446889998877777777**********9986543 PP

>> TIGR00437  feoB: ferrous iron transport protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.2   3.3e-06   0.00061       3     151 ..     306     456 ..     304     498 .. 0.72

  Alignments for each domain:
  == domain 1    score: 16.4 bits;  conditional E-value: 3.3e-06
   TIGR00437   3 pNvGKstlfnaLtgsnqkvgNwpGvTVekkegklel.kgedieivDlPGiYsLttvsldEkvardyllnekadLvvnvvdasn..leRnLyltlQllelgiplilalNlvdeAekkgirideekLe.....erLGvpv..vplsatkgrgieelkkaid 151
                    GK++l+ aL  s+++ g   G+T  +  + ++   g+ i+++D+PG  +++++             + +d+vv vv a     e  +        +++p+i+a+N++d  +    ++ ++ Le     e+ G  v  v++sa++ +++  l ++i 
  MMETSP1137-20121227|2144_1 306 VDHGKTSLLDALRSSDVAAGEAGGITQHIGASSISApDGQVITFIDTPGHAAFSEMRS--------RGANVTDIVVLVVAADDgvKEQTISSIKAAKAANVPIIVAINKIDKPNCDPSQVKTQLLEhevvlEQFGGDVlsVEVSAKERTNLXGLLEQIL 456
                 567**************************9999987256779*******988877654........3455689999999987531445555555567789***********998888888888887222223456444115567777777776666654 PP

>> TIGR03156  GTP_HflX: GTP-binding protein HflX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.1   8.9e-06    0.0017     190     347 ..     298     455 ..     291     459 .. 0.76

  Alignments for each domain:
  == domain 1    score: 15.2 bits;  conditional E-value: 8.9e-06
   TIGR03156 190 ptvalvGYTNaGKstllnaltkaevlaedklFATLdpttrrlklpeeeevlltDTVGFirkLPheLveaFkaTLeevaeadlllhvvDasdeeaeeqieaveevLeelgaeeipvllvlNkidkle..eeeleeleekkee..........avlvsAkkgegleeLleai 347
                 p+v+++G    GK++ll+al +++v a +    T       ++ p+++ +++ DT G          +  ++    ++ +d+++ vv a d   e++i++    ++  +a+++p+++++Nkidk +   ++++++  ++e           +v vsAk++++l  Lle+i
  MMETSP1137-20121227|2144_1 298 PVVTVMGHVDHGKTSLLDALRSSDVAAGEAGGITQHIGASSISAPDGQVITFIDTPGH------AAFSEMRSR--GANVTDIVVLVVAADDGVKEQTISS----IKAAKAANVPIIVAINKIDKPNcdPSQVKTQLLEHEVvleqfggdvlSVEVSAKERTNLXGLLEQI 455
                 88999**************************************************994......444455554..3455677777776555555555554....5677999************9886633443333333213344666667999********99999887 PP

>> TIGR03018  pepcterm_TyrKin: exopolysaccharide/PEPCTERM locus tyrosine autokinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.0   0.0      0.53        98     147     192 ..      10      55 ..       6      64 .. 0.80
   2 ?   10.0   0.1   0.00045     0.083     151     203 ..     347     400 ..     338     405 .. 0.77

  Alignments for each domain:
  == domain 1    score: -0.0 bits;  conditional E-value: 0.53
   TIGR03018 147 YpdRiiiiDtppllvtsearvlaelvdqivlVveeertteeavkea 192
                 Y+ R +   ++ + +++   ++ + v  ++lV+e+++ +  a +++
  MMETSP1137-20121227|2144_1  10 YASRHLAAASTCMQSVTHHLAVHQRVSTVLLVAEQQQKPGVATDDT 55 
                 7778888888888889999999999999***999998776666665 PP

  == domain 2    score: 10.0 bits;  conditional E-value: 0.00045
   TIGR03018 151 iiiiDtppllvtsearvlaelv.dqivlVveeertteeavkealsaleskkvlg 203
                 i  iDtp  +++se r+   +v d +vlVv ++   +e+  ++++a ++++v  
  MMETSP1137-20121227|2144_1 347 ITFIDTPGHAAFSEMRSRGANVtDIVVLVVAADDGVKEQTISSIKAAKAANVPI 400
                 4469***********998655527788999999998888777777777766655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (528 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       209  (0.0509508); expected 82.0 (0.02)
Passed bias filter:                      110  (0.0268162); expected 82.0 (0.02)
Passed Vit filter:                        27  (0.00658216); expected 4.1 (0.001)
Passed Fwd filter:                        22  (0.00536324); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              22  [number of targets reported over threshold]
# CPU time: 0.73u 0.18s 00:00:00.90 Elapsed: 00:00:00.87
# Mc/sec: 801.04
//
Query:       MMETSP1137-20121227|2145_1  [L=241]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.2e-23   78.7   0.1    8.9e-23   78.2   0.0    1.2  1  TIGR01068 thioredoxin: thioredoxin
    4.2e-14   50.8   0.1    5.5e-14   50.4   0.1    1.1  1  TIGR01130 ER_PDI_fam: protein disulfide isomerases
    1.1e-13   49.2   0.1    1.8e-13   48.5   0.1    1.3  1  TIGR01126 pdi_dom: protein disulfide-isomerase domain
    0.00075   17.0   0.0     0.0011   16.4   0.0    1.2  1  TIGR00385 dsbE: periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily


Domain annotation for each model (and alignments):
>> TIGR01068  thioredoxin: thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.2   0.0   8.7e-26   8.9e-23       5      97 ..     133     222 ..     129     226 .. 0.83

  Alignments for each domain:
  == domain 1    score: 78.2 bits;  conditional E-value: 8.7e-26
   TIGR01068   5 nfeetva..ssdklvlvDfwAeWCgpCkmlaPvleelakeleekvkvvKlnvdeeqeiaakygirsiPtlllfkngkevkrvvGakpkaalkeli 97 
                 +fe+++a  + ++lv+vDf+A+WCgpCk +aP +e      + ++k++K++vd+ ++++++ +++++Pt  +f+ gkev +  Ga p +al+e i
  MMETSP1137-20121227|2145_1 133 DFEKQLAaaRPKQLVVVDFFATWCGPCKQIAPEFEXEF---A-HAKFLKVDVDQCKDVSQAHKVTAMPTFKMFRAGKEVGSLQGADP-NALREKI 222
                 55555541144689******************998543...3.589***************************************99.5666666 PP

>> TIGR01130  ER_PDI_fam: protein disulfide isomerases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.4   0.1   5.4e-17   5.5e-14       8      93 ..     131     212 ..     124     217 .. 0.81

  Alignments for each domain:
  == domain 1    score: 50.4 bits;  conditional E-value: 5.4e-17
   TIGR01130   8 kenfddlike...nelvLveFYAPWCGHCksLaPeYekAAeelkkkspkvklakvDateekelaqkygvsGyPtLkifrngesssdYnG 93 
                 k++f++++ +   ++lv+v F+A WCG Ck++aPe+e          ++ k  kvD  + k+++q ++v+  Pt k+fr g+++   +G
  MMETSP1137-20121227|2145_1 131 KSDFEKQLAAarpKQLVVVDFFATWCGPCKQIAPEFEXE-------FAHAKFLKVDVDQCKDVSQAHKVTAMPTFKMFRAGKEVGSLQG 212
                 556666664322279*********************963.......23457999***************************97766555 PP

>> TIGR01126  pdi_dom: protein disulfide-isomerase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.5   0.1   1.8e-16   1.8e-13      12      85 ..     142     207 ..     130     223 .. 0.82

  Alignments for each domain:
  == domain 1    score: 48.5 bits;  conditional E-value: 1.8e-16
   TIGR01126  12 denkdvlvefyaPWCGhCkklaPeyeklakelkkeeekvkiakvdataekelaskfkvsgfPtlkffkkgkkep 85 
                   ++ v+v+f+a WCG Ck++aPe+e    e++++    k  kvd ++ k++++  kv++ Pt k+f++gk+  
  MMETSP1137-20121227|2145_1 142 RPKQLVVVDFFATWCGPCKQIAPEFEX---EFAHA----KFLKVDVDQCKDVSQAHKVTAMPTFKMFRAGKE-V 207
                 3578899******************95...67754....579****************************96.4 PP

>> TIGR00385  dsbE: periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0   1.1e-06    0.0011      60      85 ..     141     166 ..     110     192 .. 0.72

  Alignments for each domain:
  == domain 1    score: 16.4 bits;  conditional E-value: 1.1e-06
   TIGR00385  60 lkkgklvLlnvwasWCptCraehplL 85 
                 ++  +lv+++++a+WC++C++  p  
  MMETSP1137-20121227|2145_1 141 ARPKQLVVVDFFATWCGPCKQIAPEF 166
                 33447999************977655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (241 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       105  (0.0255973); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.21u 0.14s 00:00:00.35 Elapsed: 00:00:00.39
# Mc/sec: 815.62
//
Query:       MMETSP1137-20121227|2146_1  [L=126]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.2e-05   20.3   0.5    0.00013   19.8   0.3    1.4  1  TIGR02246 TIGR02246: conserved hypothetical protein


Domain annotation for each model (and alignments):
>> TIGR02246  TIGR02246: conserved hypothetical protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   0.3   3.2e-08   0.00013       8      48 ..      12      51 ..       8      79 .. 0.88

  Alignments for each domain:
  == domain 1    score: 19.8 bits;  conditional E-value: 3.2e-08
   TIGR02246  8 aLvarleaAwaagDaeafAnlFteDgvfvtvpGqklkGrea 48
                +L ++++ A  a+D +af + F++D++++ + G  + G  +
  MMETSP1137-20121227|2146_1 12 RLAQAILSAYDAKDEHAFMAYFADDASWT-FNGGAKTGARE 51
                7899*************************.99987777554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (126 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       101  (0.0246221); expected 82.0 (0.02)
Passed bias filter:                       96  (0.0234032); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.19u 0.17s 00:00:00.36 Elapsed: 00:00:00.26
# Mc/sec: 639.64
//
Query:       MMETSP1137-20121227|2147_1  [L=123]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.71    6.1   8.6      0.088    9.1   1.0    1.9  2  TIGR01312 XylB: xylulokinase


Domain annotation for each model (and alignments):
>> TIGR01312  XylB: xylulokinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   1.0   2.1e-05     0.088     228     275 ..      18      70 ..       3      73 .. 0.79
   2 ?    1.8   0.7    0.0035        15     403     445 ..      72     114 ..      70     122 .. 0.81

  Alignments for each domain:
  == domain 1    score: 9.1 bits;  conditional E-value: 2.1e-05
   TIGR01312 228 vkv.aaGggdnaagAiGlgivkegkvlvslG....tSGvvlavedkaesdpeg 275
                 v+v + G g+na gA+G ++ ++  v vs G    +S v + ve+++++d+e+
  MMETSP1137-20121227|2147_1  18 VQVdSHGKGENADGACGSAVADDPSVAVSKGvsqeSSDVTFGVEEESDADEEA 70 
                 55535799***********99999***99994444567999999999888876 PP

  == domain 2    score: 1.8 bits;  conditional E-value: 0.0035
   TIGR01312 403 sevwrqiladilglevvvpeeeegaalGaAilAaialgekdlv 445
                  + wr+++a++ ++e    ee eg a  aA++ + +++e+  +
  MMETSP1137-20121227|2147_1  72 AREWRRVIAEMEAAEAAEAEEGEGEAASAAVVPQDCESETGAA 114
                 678***********************99999988887765444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (123 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       136  (0.0331546); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.17u 0.17s 00:00:00.34 Elapsed: 00:00:00.33
# Mc/sec: 491.96
//
Query:       MMETSP1137-20121227|2149_1  [L=291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (291 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        83  (0.020234); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.18s 00:00:00.43 Elapsed: 00:00:00.38
# Mc/sec: 1010.76
//
Query:       MMETSP1137-20121227|2150_1  [L=85]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (85 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        36  (0.00877621); expected 82.0 (0.02)
Passed bias filter:                       34  (0.00828864); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.12s 00:00:00.25 Elapsed: 00:00:00.26
# Mc/sec: 431.50
//
Query:       MMETSP1137-20121227|2151_1  [L=574]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (574 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        98  (0.0238908); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.16s 00:00:00.56 Elapsed: 00:00:00.46
# Mc/sec: 1646.99
//
Query:       MMETSP1137-20121227|2152_1  [L=395]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (395 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       175  (0.0426621); expected 82.0 (0.02)
Passed bias filter:                      126  (0.0307167); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.16s 00:00:00.49 Elapsed: 00:00:00.37
# Mc/sec: 1409.07
//
Query:       MMETSP1137-20121227|2153_1  [L=216]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (216 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       106  (0.0258411); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.17s 00:00:00.37 Elapsed: 00:00:00.28
# Mc/sec: 1018.20
//
Query:       MMETSP1137-20121227|2155_1  [L=331]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      5e-16   57.3   0.0    7.7e-16   56.7   0.0    1.2  1  TIGR01444 fkbM_fam: methyltransferase, FkbM family


Domain annotation for each model (and alignments):
>> TIGR01444  fkbM_fam: methyltransferase, FkbM family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.7   0.0   1.9e-19   7.7e-16       2     132 ..     125     253 ..     124     264 .. 0.88

  Alignments for each domain:
  == domain 1    score: 56.7 bits;  conditional E-value: 1.9e-19
   TIGR01444   2 viDiGAniGdvslvfaravaegrviafEPlpdllekleenvklnnlkn.vkllnaAvgdregeleftvsddatgnsslaadselaeeseieVevvtlddlveeag.lekvdllKiDvEGaEleVLrglaetle 132
                 ++ +G+niG++sl +a ++ e  ++ fEP p  ++k+   +  n ++  v+++ + ++d++g + +  +  ++g+ ++a+ + +++++ ++++v  ld ++ +     ++ +lK+D+EG E++ Lrgl+   +
  MMETSP1137-20121227|2155_1 125 LVXVGGNIGMFSLAAAAVGIE--THTFEPVPSSATKIIISAVRNSFRHlVHVYTMGASDTSGVFGMGFAATNQGEATHAPLE-QNTRQFVQIPVLPLDAVLPHGAfAPRPVYLKMDIEGGECRALRGLRRF-L 253
                 5679************99998..**************999999999999*************88887777677777777776.5777789*************99999*******************8763.3 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (331 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       129  (0.0314481); expected 82.0 (0.02)
Passed bias filter:                      116  (0.0282789); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.28u 0.16s 00:00:00.44 Elapsed: 00:00:00.31
# Mc/sec: 1409.30
//
Query:       MMETSP1137-20121227|2156_1  [L=74]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (74 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        43  (0.0104827); expected 82.0 (0.02)
Passed bias filter:                       38  (0.00926377); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.26
# Mc/sec: 375.66
//
Query:       MMETSP1137-20121227|2157_1  [L=486]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (486 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       102  (0.0248659); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.17s 00:00:00.53 Elapsed: 00:00:00.36
# Mc/sec: 1781.85
//
Query:       MMETSP1137-20121227|2158_1  [L=154]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (154 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        36  (0.00877621); expected 82.0 (0.02)
Passed bias filter:                       35  (0.00853242); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.14s 00:00:00.30 Elapsed: 00:00:00.28
# Mc/sec: 700.91
//
Query:       MMETSP1137-20121227|2160_1  [L=680]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (680 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       110  (0.0268162); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.12s 00:00:00.55 Elapsed: 00:00:00.56
# Mc/sec: 1574.61
//
Query:       MMETSP1137-20121227|2161_1  [L=164]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (164 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        40  (0.00975134); expected 82.0 (0.02)
Passed bias filter:                       33  (0.00804486); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.17s 00:00:00.35 Elapsed: 00:00:00.32
# Mc/sec: 676.44
//
Query:       MMETSP1137-20121227|2162_1  [L=199]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (199 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        97  (0.023647); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.13s 00:00:00.32 Elapsed: 00:00:00.31
# Mc/sec: 847.28
//
Query:       MMETSP1137-20121227|2163_1  [L=437]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.1e-10   39.5   0.0    5.4e-10   37.2   0.0    2.0  2  TIGR01661 ELAV_HUD_SF: ELAV/HuD family splicing factor
    3.7e-08   30.8   0.0    5.3e-08   30.3   0.0    1.4  2  TIGR01628 PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family
      3e-07   27.1   0.0    4.6e-07   26.5   0.0    1.3  1  TIGR01642 U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor
    7.7e-07   26.9   0.1    3.2e-06   24.8   0.0    2.0  3  TIGR01659 sex-lethal: sex-lethal family splicing factor
    8.7e-06   22.8   0.0      1e-05   22.6   0.0    1.1  1  TIGR01622 SF-CC1: splicing factor, CC1-like family
     0.0037   14.1   0.0     0.0073   13.1   0.0    1.4  1  TIGR01649 hnRNP-L_PTB: hnRNP-L/PTB/hephaestus splicing factor family
      0.004   13.8   2.9     0.0073   12.9   0.0    2.4  2  TIGR01648 hnRNP-R-Q: hnRNP-R, Q splicing factor family


Domain annotation for each model (and alignments):
>> TIGR01661  ELAV_HUD_SF: ELAV/HuD family splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.2   0.0   9.2e-13   5.4e-10      89     200 ..       7     118 ..       2     236 .. 0.73
   2 ?   -0.3   0.0      0.22   1.3e+02      50     342 ..     404     432 ..     399     435 .. 0.51

  Alignments for each domain:
  == domain 1    score: 37.2 bits;  conditional E-value: 9.2e-13
   TIGR01661  89 ganlyvsGlPktmtqkeleslfspfGkiitsrilsdnvtdlskGvGfirfdkreeadraikalnGttPsgate.pitvkfannP.sssnskallsdleavlnaqltrvprstil 200
                 +  l+v G+P     kel slfs +G++    il+ +  +  +G  f+r+   +    ai al G+    a e p++v++a+ P s++ns+++     a+  a  + +  s ++
  MMETSP1137-20121227|2163_1   7 ENKLFVGGVPSCCGDKELRSLFSTYGEVQDVYILASK--EGQRGCAFVRYAAPQSCSMAIDALHGKYAMKAGElPLVVRYADPPkSQRNSQQMYGANXALPMAGRAGAVASWPA 118
                 5679******************************876..5679***********************999988879*******99445677777765555544444433333333 PP

  == domain 2    score: -0.3 bits;  conditional E-value: 0.22
   TIGR01661  50 vnyvreedaekavnslnGlrlqnktikvsyarPssdsikganlyvsGlPktmtqkeleslfspfGkiitsrilsdnvtdlskGvGfirfdkreeadraikalnGttPsgatepitvkfannPsssnskallsdleavlnaqltrvprstiltaaaiaplhkaaakfrlsaldflavlakrlqqhavaqqaaaqrasplaadgavaglaagaqiaasdgagycifvynlspdtdeavlqlfgpfGavqsvkiirdlttnkckGygfvsmtnydeaalailslnGytl.gnrvlqv 342
                 vn+  +  a +                                                                                                                                                                                                                                                                            slnG  + g++ lqv
  MMETSP1137-20121227|2163_1 404 VNFDSPMSAVH-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCSSLNGLPMvGEKSLQV 432
                 44444444444.........................................................................................................................................................................................................................................................................445666654325566665 PP

>> TIGR01628  PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.3   0.0   9.1e-11   5.3e-08     288     369 ..      10      94 ..       2     294 .. 0.72
   2 ?   -3.7   0.0       1.7     1e+03     329     356 ..     402     430 ..     400     432 .. 0.69

  Alignments for each domain:
  == domain 1    score: 30.3 bits;  conditional E-value: 9.1e-11
   TIGR01628 288 lYvkNlddtvddekLrelFeefGeitSakvmldekekSkgFGFVcfssqeeAnkAvtelhgkil...ngkPLyvalAqr.keqRka 369
                 l+v  +     d++Lr lF+ +Ge++ + ++ ++ e  +g  FV ++ ++  + A+  lhgk     ++ PL v +A+  k qR++
  MMETSP1137-20121227|2163_1  10 LFVGGVPSCCGDKELRSLFSTYGEVQDVYILASK-EGQRGCAFVRYAAPQSCSMAIDALHGKYAmkaGELPLVVRYADPpKSQRNS 94 
                 4444444445555566666666666655555554.333555566666666666666666654321113445555555532444443 PP

  == domain 2    score: -3.7 bits;  conditional E-value: 1.7
   TIGR01628 329 GFVcfssqeeAnkAvtelhg.kilngkPL 356
                 G V f s+  A +  + l+g  ++++k L
  MMETSP1137-20121227|2163_1 402 GIVNFDSPMSAVHGCSSLNGlPMVGEKSL 430
                 66777777777777777777667777766 PP

>> TIGR01642  U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.5   0.0   7.9e-10   4.6e-07     292     377 ..       3      89 ..       1     114 [. 0.83

  Alignments for each domain:
  == domain 1    score: 26.5 bits;  conditional E-value: 7.9e-10
   TIGR01642 292 vldsedklyignLPldlkddqvkeLLesFGdLkaFnliKdlatGlsKGyaFceykdssvtdlAiaaLnG...iklgdkkLnvkrAtvga 377
                  ++se+kl++g++P   +d+ ++ L   +G+++   ++   ++G  +G aF+ y  +    +Ai aL G   +k g+  L v+ A   +
  MMETSP1137-20121227|2163_1   3 QSNSENKLFVGGVPSCCGDKELRSLFSTYGEVQDVYILAS-KEG-QRGCAFVRYAAPQSCSMAIDALHGkyaMKAGELPLVVRYADPPK 89 
                 689*******************************998865.456.68**********************44446777788888776555 PP

>> TIGR01659  sex-lethal: sex-lethal family splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.8   0.0   5.4e-09   3.2e-06     189     279 ..       3      92 ..       1     125 [. 0.78
   2 ?   -2.6   0.8       1.2   6.8e+02       6      37 ..     346     374 ..     330     394 .. 0.77
   3 ?   -3.5   0.0       2.3   1.3e+03     152     179 ..     402     430 ..     397     432 .. 0.77

  Alignments for each domain:
  == domain 1    score: 24.8 bits;  conditional E-value: 5.4e-09
   TIGR01659 189 esikdtnlyvtnlprtitddqldtifgkygsivqknilrdkltgkprgvafvrfnkreeaqeaisalnnv.ipeggsqpltvrlaeehgkak 279
                 +s  +  l+v  +p +  d++l ++f  yg++ +  il  k     rg afvr+   +    ai al      + g  pl vr a+     +
  MMETSP1137-20121227|2163_1   3 QSNSENKLFVGGVPSCCGDKELRSLFSTYGEVQDVYILASKEG--QRGCAFVRYAAPQSCSMAIDALHGKyAMKAGELPLVVRYADPPKSQR 92 
                 5666788*************************99****99974..59********************86515678899******98643333 PP

  == domain 2    score: -2.6 bits;  conditional E-value: 1.2
   TIGR01659   6 nnggyapygynnkssggrmfgmshslpsgmsr 37 
                  ngg  p g n+ s+   m    hs p g+s 
  MMETSP1137-20121227|2163_1 346 ANGGIGPAGLNGLSA---MANNGHSAPNGISA 374
                 577777888777654...55566777777764 PP

  == domain 3    score: -3.5 bits;  conditional E-value: 2.3
   TIGR01659 152 afvdfaseadsqraikslngit.vrnkrl 179
                 ++v+f s + +     slng+  v +k l
  MMETSP1137-20121227|2163_1 402 GIVNFDSPMSAVHGCSSLNGLPmVGEKSL 430
                 67999999999999999999842455555 PP

>> TIGR01622  SF-CC1: splicing factor, CC1-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.6   0.0   1.7e-08     1e-05     216     284 ..       4      71 ..       1     184 [. 0.81

  Alignments for each domain:
  == domain 1    score: 22.6 bits;  conditional E-value: 1.7e-08
   TIGR01622 216 siadlkLYvGnlhfnitEqeLrqiFepFGeielvqlqkDpetGrskGyGFiqFsdaeeakeAleklNG.l 284
                 s ++ kL+vG++ +   ++eLr +F  +Ge+++v +   +e+   +G  F+++   +    A+ +l G  
  MMETSP1137-20121227|2163_1   4 SNSENKLFVGGVPSCCGDKELRSLFSTYGEVQDVYILASKEG--QRGCAFVRYAAPQSCSMAIDALHGkY 71 
                 67889*********************************9999..89*******99999999999988852 PP

>> TIGR01649  hnRNP-L_PTB: hnRNP-L/PTB/hephaestus splicing factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.1   0.0   1.3e-05    0.0073     316     359 ..      24      70 ..      15      78 .. 0.86

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 1.3e-05
   TIGR01649 316 lFnlfgvYGdvervkilknkket...alvemadpqqaqlalthLdkv 359
                 l  lf+ YG+v+ v il +k+++   a+v +a pq    a++ L ++
  MMETSP1137-20121227|2163_1  24 LRSLFSTYGEVQDVYILASKEGQrgcAFVRYAAPQSCSMAIDALHGK 70 
                 6689***************9753333****************99865 PP

>> TIGR01648  hnRNP-R-Q: hnRNP-R, Q splicing factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.9   0.0   1.3e-05    0.0073      60     128 ..       9      77 ..       2      86 .. 0.80
   2 ?   -1.4   0.6      0.28   1.6e+02     437     497 ..     180     242 ..     155     263 .. 0.58

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 1.3e-05
   TIGR01648  60 evfvGkiPrdlyedelvPlfekvGkiyelrlmmdldGknrGyafvtfcnkeeakeavkeln.nyeirpGr 128
                  +fvG +P    + el  lf + G++ ++ ++   +G+ rG afv ++  +    a+  l+ +y ++ G 
  MMETSP1137-20121227|2163_1   9 KLFVGGVPSCCGDKELRSLFSTYGEVQDVYILASKEGQ-RGCAFVRYAAPQSCSMAIDALHgKYAMKAGE 77 
                 67999999999999999999999999999999888886.8999999999999998888775357777776 PP

  == domain 2    score: -1.4 bits;  conditional E-value: 0.28
   TIGR01648 437 apaileeisr.naapaPkiiedgriltlekiii..paav.sqdpaiaalappkasaavreakstp 497
                 +p  +e+++  +++  P +  + r l+ + +++  p+    q+pa+ a+a+++asa  r+++   
  MMETSP1137-20121227|2163_1 180 RPVSAEPRALvQQWLVP-VSAEPRALIQQWLVAtaPVKWhRQRPAA-AAASAAASAGERPCVCVE 242
                 44445555555666666.5555665555555441144331466666.455555555555555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (437 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        87  (0.0212092); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.38u 0.14s 00:00:00.52 Elapsed: 00:00:00.42
# Mc/sec: 1373.32
//
Query:       MMETSP1137-20121227|2165_1  [L=476]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.2e-25   87.3   0.0    3.5e-25   86.6   0.0    1.2  1  TIGR03598 GTPase_YsxC: ribosome biogenesis GTP-binding protein YsxC
    3.5e-07   28.0   0.0      6e-07   27.2   0.0    1.3  1  TIGR00231 small_GTP: small GTP-binding protein domain
    4.6e-07   27.3   0.0    1.4e-06   25.7   0.0    1.7  2  TIGR03596 GTPase_YlqF: ribosome biogenesis GTP-binding protein YlqF
    5.2e-07   26.7   0.0    7.5e-07   26.1   0.0    1.2  1  TIGR03918 GTP_HydF: [FeFe] hydrogenase H-cluster maturation GTPase HydF
      3e-06   24.3   0.0    4.6e-06   23.7   0.0    1.3  1  TIGR03594 GTPase_EngA: ribosome-associated GTPase EngA
    1.4e-05   22.2   0.0    1.9e-05   21.7   0.0    1.2  1  TIGR00450 mnmE_trmE_thdF: tRNA modification GTPase TrmE
    5.5e-05   20.3   0.0    8.4e-05   19.7   0.0    1.2  1  TIGR03597 GTPase_YqeH: ribosome biogenesis GTPase YqeH
    0.00064   16.6   0.1     0.0013   15.6   0.0    1.5  2  TIGR03156 GTP_HflX: GTP-binding protein HflX
     0.0009   16.5   0.0     0.0014   15.8   0.0    1.2  1  TIGR00436 era: GTP-binding protein Era
     0.0018   15.8   0.2      0.034   11.6   0.0    2.2  2  TIGR03263 guanyl_kin: guanylate kinase
  ------ inclusion threshold ------
       0.02   12.2   0.0      0.059   10.7   0.0    1.7  2  TIGR00157 TIGR00157: ribosome small subunit-dependent GTPase A


Domain annotation for each model (and alignments):
>> TIGR03598  GTPase_YsxC: ribosome biogenesis GTP-binding protein YsxC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.6   0.0   9.3e-28   3.5e-25      17     159 ..     200     344 ..     187     360 .. 0.85

  Alignments for each domain:
  == domain 1    score: 86.6 bits;  conditional E-value: 9.3e-28
   TIGR03598  17 klpeiafaGrSNvGKSsliNaLtnrkklartSktPGrTqlinffevneelrlvDlPGYGyakvs..keekekwqklieeYLekrenLkgvvllvDirhelkelDlellellkeakipvlvvltKaDklkkselkka.lkkvkkelk 159
                  lp  + aG  N+GKSs++N L++++ lar S+   +T+++ +fe+n++l++ DlPG      +   + +++++ l+ eYL+++++L++++ l Dir +++   +++l+ ++  ++p+l+vltK Dkl  +++++a ++k+++e++
  MMETSP1137-20121227|2165_1 200 ALPHFCAAGETNAGKSSMLNHLMKKQ-LARSSSVSCKTRTVDMFELNSRLVVTDLPGIPSRDHQgvVQWERDYEPLVFEYLRECTSLRALLYLHDIRWKVSPAARDFLRRVRGFGVPILLVLTKDDKLVAQATESAsAAKMEAEMR 344
                 5688999***************9865.******************************987655511455678899****************************************************9988776551445555554 PP

>> TIGR00231  small_GTP: small GTP-binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.2   0.0   1.6e-09     6e-07      10     152 ..     208     352 ..     205     359 .. 0.84

  Alignments for each domain:
  == domain 1    score: 27.2 bits;  conditional E-value: 1.6e-09
   TIGR00231  10 GhvdvGKstLlnsllknkisiteskpgvtrdyvteqieedGktykvnllDTaG.....qedfdairrlyvreverslevvdi...vilvldveeglekqtkeiiheakkkgvpiilvvnKiDlkddlktkvkslfaklnaepiielsaetg 152
                 G+ ++GKs++ln l k++ + ++s++  tr++ +  +e ++   ++ + D++G     ++ + + +r y + v   l+++      +++ d+++++ +  + + + ++  gvpi+lv++K D+    +  +   +ak++ae   +l+++t+
  MMETSP1137-20121227|2165_1 208 GETNAGKSSMLNHLMKKQLARSSSVSCKTRTVDM--FELNS---RLVVTDLPGipsrdHQGVVQWERDYEPLVFEYLRECTSlraLLYLHDIRWKVSPAARDFLRRVRGFGVPILLVLTKDDKLV-AQATESASAAKMEAEMRLRLTTRTR 352
                 899*********************9999999999..99999...79*********99988898999999999999998765412246679******************9*************988.4555555667777776666666665 PP

>> TIGR03596  GTPase_YlqF: ribosome biogenesis GTP-binding protein YlqF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.7   0.0   3.7e-09   1.4e-06     124     173 ..     207     256 ..     183     262 .. 0.92
   2 ?   -2.4   0.0       1.4   5.3e+02      50      71 ..     315     336 ..     288     367 .. 0.66

  Alignments for each domain:
  == domain 1    score: 25.7 bits;  conditional E-value: 3.7e-09
   TIGR03596 124 vGiPNvGKStliNrlakkkvakvgnkpgvTksqqwiklskeleLlDtPGi 173
                  G  N GKS+++N+l+kk+ a++      T++  +++l+++l ++D PGi
  MMETSP1137-20121227|2165_1 207 AGETNAGKSSMLNHLMKKQLARSSSVSCKTRTVDMFELNSRLVVTDLPGI 256
                 5777*********************************************9 PP

  == domain 2    score: -2.4 bits;  conditional E-value: 1.4
   TIGR03596  50 prlivlnkaDladpektkkwlk 71 
                 p+l+vl+k D    ++t++  +
  MMETSP1137-20121227|2165_1 315 PILLVLTKDDKLVAQATESASA 336
                 7888888888777776665443 PP

>> TIGR03918  GTP_HydF: [FeFe] hydrogenase H-cluster maturation GTPase HydF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.1   0.0     2e-09   7.5e-07       9     149 ..     203     348 ..     197     387 .. 0.73

  Alignments for each domain:
  == domain 1    score: 26.1 bits;  conditional E-value: 2e-09
   TIGR03918   9 hialfGrrNaGKSsliNaltgqdvaivsdvpGtTtDpvekamEllplGpvvliDTaGldDegeLGelRvektrevl........ektdlallvvdaeaeleeleeelleelkekkipvivvlnkidlkeeeke.keklekkkeeevvlvs 149
                 h    G++NaGKSs++N l+++++a  s+v   T  +    +El +    v++D +G+  + + G +  e+  e l        ++    l++ d + +++ + +++l++++   +p+++vl+k d+  ++++ ++++ k ++e  + ++
  MMETSP1137-20121227|2165_1 203 HFCAAGETNAGKSSMLNHLMKKQLARSSSVSCKTR-T-VDMFELNS--RLVVTDLPGIPSRDHQGVVQWERDYEPLvfeylrecTSLRALLYLHDIRWKVSPAARDFLRRVRGFGVPILLVLTKDDKLVAQATeSASAAKMEAEMRLRLT 348
                 66778***********************9998763.2.23556654..68999*****999999999999877643222222113345678899999999**************************988876633333333333333333 PP

>> TIGR03594  GTPase_EngA: ribosome-associated GTPase EngA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.7   0.0   1.2e-08   4.6e-06       7     135 ..     208     341 ..     188     370 .. 0.78

  Alignments for each domain:
  == domain 1    score: 23.7 bits;  conditional E-value: 1.2e-08
   TIGR03594   7 GrpNVGKStLfNrlvkkrkAivedtpgvTRDrkygeaelkgkefiliDTgGl.eeeede....lekeireqaelaieea...dvilfvvdareglteeDeeiaklLrkskkpvilvvNKvdnk.keeaeaaefyslGl 135
                 G +N GKS+++N l+kk+ A  ++++  TR      +el + ++ + D +G+ + ++++    +e++ +  +   ++e+    ++l++ d r +++++ +++ + +r  + p++lv+ K d+  ++++e a+++++  
  MMETSP1137-20121227|2165_1 208 GETNAGKSSMLNHLMKKQLARSSSVSCKTRTVD--MFEL-NSRLVVTDLPGIpS-RDHQgvvqWERDYEPLVFEYLRECtslRALLYLHDIRWKVSPAARDFLRRVRGFGVPILLVLTKDDKLvAQATESASAAKMEA 341
                 899*****************9999999998554..4555.5689999*****53.4433233355555555666666662226899*********************************9998445555666666655 PP

>> TIGR00450  mnmE_trmE_thdF: tRNA modification GTPase TrmE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.7   0.0   5.2e-08   1.9e-05     202     327 ..     194     324 ..     174     360 .. 0.68

  Alignments for each domain:
  == domain 1    score: 21.7 bits;  conditional E-value: 5.2e-08
   TIGR00450 202 kleklkdglklaivGktNvGKSSLlNallkkdraiVsdikGttRDvvEedleleGilvkllDtAGi..Reaadkv..EklGiekslkaikead...lvlyvlDaskpltkdd.eliitlkkkkkdlllvlNKiD 327
                  +e+l+       +G+tN+GKSS+lN l+kk+ a  s++   tR v  + +el+  lv + D  Gi  R+++  v  E+      ++ ++e+     +ly+ D++    ++  + + +++    ++llvl K D
  MMETSP1137-20121227|2165_1 194 AMEQLRALPHFCAAGETNAGKSSMLNHLMKKQLARSSSVSCKTRTV--DMFELNSRLV-VTDLPGIpsRDHQGVVqwERDYEPLVFEYLRECTslrALLYLHDIRWKVSPAArDFLRRVRGFGVPILLVLTKDD 324
                 46777777778889******************************76..6788887766.778888766666654433444444445555555311135666666665555544555666666666666666666 PP

>> TIGR03597  GTPase_YqeH: ribosome biogenesis GTPase YqeH
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.0   2.3e-07   8.4e-05     143     219 ..     189     260 ..     178     276 .. 0.79

  Alignments for each domain:
  == domain 1    score: 19.7 bits;  conditional E-value: 2.3e-07
   TIGR03597 143 kellelikkarekkdvyvvGvtNVGKSsliNkllklnkgkkkvittSkfpgTTldlieipldkesvllDtpGiinee 219
                 ++l +++++ r        G tN GKSs++N+l+k++   ++  ++S  +  T+d+ e  l+++ v+ D pGi +++
  MMETSP1137-20121227|2165_1 189 RDLQDAMEQLRALPHFCAAGETNAGKSSMLNHLMKKQLARSS--SVS-CKTRTVDMFE--LNSRLVVTDLPGIPSRD 260
                 5677888888888888999***************87776666..444.4556788776..55699*******97654 PP

>> TIGR03156  GTP_HflX: GTP-binding protein HflX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   3.4e-06    0.0013     171     215 ..     183     227 ..     161     253 .. 0.84
   2 ?   -3.6   0.0       2.3   8.6e+02     301     326 ..     313     338 ..     302     355 .. 0.64

  Alignments for each domain:
  == domain 1    score: 15.6 bits;  conditional E-value: 3.4e-06
   TIGR03156 171 ekvekqreeqrkkrkksevptvalvGYTNaGKstllnaltkaevl 215
                  + e++r+ q +  + +++p++   G TNaGKs++ln+l+k++  
  MMETSP1137-20121227|2165_1 183 LRCETSRDLQDAMEQLRALPHFCAAGETNAGKSSMLNHLMKKQLA 227
                 56678899999999999***********************98765 PP

  == domain 2    score: -3.6 bits;  conditional E-value: 2.3
   TIGR03156 301 eipvllvlNkidkleeeeleeleekk 326
                  +p+llvl k dkl  +++e++++ k
  MMETSP1137-20121227|2165_1 313 GVPILLVLTKDDKLVAQATESASAAK 338
                 56888888888888866665555443 PP

>> TIGR00436  era: GTP-binding protein Era
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0   3.9e-06    0.0014       7      63 ..     208     261 ..     204     267 .. 0.86

  Alignments for each domain:
  == domain 1    score: 15.8 bits;  conditional E-value: 3.9e-06
   TIGR00436   7 GrpnvGKSTLlNkllgqkisivSpkaqTTrnrisgiltegasqiifiDtPGlhekkh 63 
                 G +n+GKS +lN+l++++ +  S+++  Tr      + e +s+ +  D PG+  + h
  MMETSP1137-20121227|2165_1 208 GETNAGKSSMLNHLMKKQLARSSSVSCKTRT---VDMFELNSRLVVTDLPGIPSRDH 261
                 99***********************999995...35677888999999999987755 PP

>> TIGR03263  guanyl_kin: guanylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.6   0.0   9.2e-05     0.034       7      39 ..     207     239 ..     203     247 .. 0.87
   2 ?    1.8   0.0     0.091        34      25      51 ..     338     364 ..     329     374 .. 0.79

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 9.2e-05
   TIGR03263   7 sgpsGvGKstlvkklleekeelklsvSattRkp 39 
                 +g + +GKs+++++l++++   + svS+ tR+ 
  MMETSP1137-20121227|2165_1 207 AGETNAGKSSMLNHLMKKQLARSSSVSCKTRTV 239
                 57789**************************86 PP

  == domain 2    score: 1.8 bits;  conditional E-value: 0.091
   TIGR03263  25 keelklsvSattRkpRegEvdgkdYfF 51 
                 k e ++ +  ttR++R+ + +g + ++
  MMETSP1137-20121227|2165_1 338 KMEAEMRLRLTTRTRRAMNFNGLHVHY 364
                 5566777889************88665 PP

>> TIGR00157  TIGR00157: ribosome small subunit-dependent GTPase A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   0.00016     0.059     126     186 ..     205     259 ..     160     275 .. 0.75
   2 ?   -2.0   0.0       1.2   4.5e+02      69      95 ..     313     339 ..     304     376 .. 0.74

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 0.00016
   TIGR00157 126 vfaGqSGVGKSSLiNlldpevkqkvkevseklklGkhTTtsvelfhl.qgGliiDtPGfnel 186
                   aG+   GKSS++N+l  ++ ++ + vs         T++v +f+l +  ++ D PG+ + 
  MMETSP1137-20121227|2165_1 205 CAAGETNAGKSSMLNHLMKKQLARSSSVSC-------KTRTVDMFELnSRLVVTDLPGIPSR 259
                 4589999**********8776666665554.......3788999999444556799999765 PP

  == domain 2    score: -2.0 bits;  conditional E-value: 1.2
   TIGR00157  69 niepiivlnkkdlleeedaekeqleel 95 
                 ++ +++vl+k d+l  + +e + + ++
  MMETSP1137-20121227|2165_1 313 GVPILLVLTKDDKLVAQATESASAAKM 339
                 566788999999998888885555444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (476 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       155  (0.0377864); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                        25  (0.00609459); expected 4.1 (0.001)
Passed Fwd filter:                        11  (0.00268162); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.40u 0.14s 00:00:00.54 Elapsed: 00:00:00.55
# Mc/sec: 1142.31
//
Query:       MMETSP1137-20121227|2166_1  [L=77]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0023   14.7   0.0     0.0025   14.6   0.0    1.0  1  TIGR02475 CobW: cobalamin biosynthesis protein CobW


Domain annotation for each model (and alignments):
>> TIGR02475  CobW: cobalamin biosynthesis protein CobW
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.0   6.1e-07    0.0025     280     339 ..       7      66 ..       2      69 .. 0.87

  Alignments for each domain:
  == domain 1    score: 14.6 bits;  conditional E-value: 6.1e-07
   TIGR02475 280 edvlrikGfvevegk.plrllvqavGkrvdsyydrawkaeearstrlvviGlkdldeaaia 339
                  +v+r+kG + ++g   +    qav +  +     +w  +e+ s+rlv iG++ l +++++
  MMETSP1137-20121227|2166_1   7 VQVYRAKGIMLIAGXeDVMYSFQAVNDTYELAASTSWPEDEKPSSRLVFIGRN-LPRRQLE 66 
                 579*********9962577889*****************************98.8777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (77 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        45  (0.0109703); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.13u 0.14s 00:00:00.27 Elapsed: 00:00:00.27
# Mc/sec: 376.41
//
Query:       MMETSP1137-20121227|2167_1  [L=162]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (162 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       108  (0.0263286); expected 82.0 (0.02)
Passed bias filter:                      105  (0.0255973); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.19s 00:00:00.35 Elapsed: 00:00:00.52
# Mc/sec: 411.20
//
Query:       MMETSP1137-20121227|2168_1  [L=337]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (337 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       133  (0.0324232); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.17s 00:00:00.47 Elapsed: 00:00:00.46
# Mc/sec: 966.96
//
Query:       MMETSP1137-20121227|2169_1  [L=116]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (116 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        68  (0.0165773); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.12s 00:00:00.27 Elapsed: 00:00:00.27
# Mc/sec: 567.06
//
Query:       MMETSP1137-20121227|2170_1  [L=139]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (139 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       107  (0.0260848); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.12s 00:00:00.28 Elapsed: 00:00:00.28
# Mc/sec: 655.23
//
Query:       MMETSP1137-20121227|2171_1  [L=501]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (501 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       169  (0.0411994); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.15s 00:00:00.49 Elapsed: 00:00:00.42
# Mc/sec: 1574.44
//
Query:       MMETSP1137-20121227|2172_1  [L=205]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.045   10.7   0.1      0.062   10.2   0.1    1.1  1  TIGR00452 TIGR00452: putative methyltransferase


Domain annotation for each model (and alignments):
>> TIGR00452  TIGR00452: putative methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.1   1.5e-05     0.062     168     226 ..      40      98 ..      26     101 .. 0.91

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 1.5e-05
   TIGR00452 168 dndkraillplGieqlqelkafdtvfslGvlyhrksplealkqlkdqlvkeGelvletl 226
                  n +r +ll+l    l  ++ f  vf  G+   rks   + k+l  ++  eGe vl+ l
  MMETSP1137-20121227|2172_1  40 LNTRRLTLLALVAHCLARKRLFKEVFDQGLERARKSERANDKALCVRVESEGEXVLDVL 98 
                 47899***************************************************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (205 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       106  (0.0258411); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.21u 0.17s 00:00:00.38 Elapsed: 00:00:00.45
# Mc/sec: 601.28
//
Query:       MMETSP1137-20121227|2173_1  [L=791]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.7e-09   32.8   0.0    8.8e-09   32.2   0.0    1.2  1  TIGR02938 nifL_nitrog: nitrogen fixation negative regulator NifL
    1.2e-08   33.0   0.0    6.5e-08   30.6   0.0    2.1  2  TIGR00229 sensory_box: PAS domain S-box protein


Domain annotation for each model (and alignments):
>> TIGR02938  nifL_nitrog: nitrogen fixation negative regulator NifL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.2   0.0   4.3e-12   8.8e-09      13     113 ..     491     599 ..     482     634 .. 0.78

  Alignments for each domain:
  == domain 1    score: 32.2 bits;  conditional E-value: 4.3e-12
   TIGR02938  13 apvaisitdlkanil...yanaafseitGyakeeviGknesvlsnrttPpevyqalwgsl....aekkPwaGkllnrrkdgelylaeltvaPvlneaGetthflG.mhr 113
                  +va+ + d +   l   ++n+af+++tGy+ +e +Gkn   l  r+t      ++  +l    a       ++ln  k ge +   +++ Pv +++G  t+ +G mhr
  MMETSP1137-20121227|2173_1 491 LDVAVVVVDVRVGGLplkFVNSAFENLTGYSAHEAVGKNCRFLQGRKTQAVSVGQFVHKLreptASVALDVVHVLNYTKQGEEFTNCVSLHPVFDQTGRYTYSIGvMHR 599
                 578888888887543334**************************9999876544444444011033444456799******************************7787 PP

>> TIGR00229  sensory_box: PAS domain S-box protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0       0.2   4.1e+02      56      90 ..      85     120 ..      79     131 .. 0.82
   2 !   30.6   0.0   3.2e-11   6.5e-08      27     122 ..     507     606 ..     481     610 .. 0.81

  Alignments for each domain:
  == domain 1    score: -1.1 bits;  conditional E-value: 0.2
   TIGR00229  56 eedreevrerierrle.gerepvseerrvkrkdGse 90 
                 ++  ++ r r++r+   +e e  +e   v++++G+ 
  MMETSP1137-20121227|2173_1  85 DPANMQQRHRFKRQFAtSEMELDEEYQAVQTHRGRL 120
                 56667778889999999999999999999***9985 PP

  == domain 2    score: 30.6 bits;  conditional E-value: 3.2e-11
   TIGR00229  27 ilyvNrafeeifGYsaeeliGrnvlelipeedreevrerierrle.gerepvseerrv..krkdGseiwvevsvspird.aggelgvvgivrDIterkea 122
                 + +vN afe ++GYsa e++G+n + l     + ++   + ++l+ ++ ++    + v  ++k+G+e+   vs+ p+ d  g+ ++ +g+++ ++  k++
  MMETSP1137-20121227|2173_1 507 LKFVNSAFENLTGYSAHEAVGKNCRFLQGRKTQAVSVGQFVHKLRePTASVALDVVHVlnYTKQGEEFTNCVSLHPVFDqTGRYTYSIGVMHRVDGTKRT 606
                 458***********************99999999999999999996666666666666999****************************99988777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (791 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        95  (0.0231594); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.16s 00:00:00.67 Elapsed: 00:00:00.95
# Mc/sec: 1098.98
//
Query:       MMETSP1137-20121227|2174_1  [L=102]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (102 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        78  (0.0190151); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.15s 00:00:00.29 Elapsed: 00:00:00.30
# Mc/sec: 448.76
//
Query:       MMETSP1137-20121227|2175_1  [L=228]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (228 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        70  (0.0170648); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.13s 00:00:00.34 Elapsed: 00:00:00.37
# Mc/sec: 813.34
//
Query:       MMETSP1137-20121227|2176_1  [L=96]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (96 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       106  (0.0258411); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.18s 00:00:00.30 Elapsed: 00:00:00.31
# Mc/sec: 408.74
//
Query:       MMETSP1137-20121227|2177_1  [L=155]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (155 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        23  (0.00560702); expected 82.0 (0.02)
Passed bias filter:                       21  (0.00511945); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.13s 00:00:00.27 Elapsed: 00:00:00.28
# Mc/sec: 730.65
//
Query:       MMETSP1137-20121227|2178_1  [L=221]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0055   12.3  10.5      0.007   11.9   7.3    1.0  1  TIGR02168 SMC_prok_B: chromosome segregation protein SMC
  ------ inclusion threshold ------
        2.8    4.6  14.9        4.6    3.9  10.3    1.3  1  TIGR01843 type_I_hlyD: type I secretion membrane fusion protein, HlyD family


Domain annotation for each model (and alignments):
>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.9   7.3   3.4e-06     0.007     794     934 ..      69     210 ..      52     218 .. 0.53

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 3.4e-06
   TIGR02168 794 eqlkeelkalrealseleaeltelkeeaaekeerleslekeiaalekeleeleeqieeleeeiesleaeieeleeeleeleeeleellkekasleealaelreeleelseelrelekkvkelere.leelreklaqlelrle 934
                 e l +++++l+++l + +a+lt+l  +  +++ ++++ ++++++le        ++++ ++ei++l+ + e+ + + + l ++l ++l   +   ea +++ +e+++++++  +l  ++++++++  ++ r++++ql+ ++ 
  MMETSP1137-20121227|2178_1  69 EGLMRQVESLKSKLGAHQAQLTALTGQNLQLQLEMKQAKERVRELEVANGGPGGTAANDKAEIARLKTAYESEQLRADLLVQQLSSALSTAKVDYEAGKAQLAEQQAARAKKATLHAEASKKRADgFKAIRSEFKQLRDAML 210
                 4555666666666666666666555555556666666666666666666666666666666666666666666666555555555544444444444444444444444444444444333332213333444444333333 PP

>> TIGR01843  type_I_hlyD: type I secretion membrane fusion protein, HlyD family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9  10.3    0.0023       4.6     125     273 ..      69     217 ..      34     218 .. 0.87

  Alignments for each domain:
  == domain 1    score: 3.9 bits;  conditional E-value: 0.0023
   TIGR01843 125 elvkeqeslfesrksalraqlesleaqikqleaeleglqaqlqalrqqlel.iseelealrkLkekglvsrlelLelereraelqgelaeleaeleklkaeldeleeklqeleqkfreevseelreaqarlaeleeelskardrlqrlii 273
                 e + +q++ ++s++ a++aql +l+ q  ql+ e++++++++++l+          ++++ +++  +   ++e L ++  +++l+++l +++ + e+ ka+l+e ++ ++  ++++ +e+s+++ +  + + +  ++l+ a  +lq+++i
  MMETSP1137-20121227|2178_1  69 EGLMRQVESLKSKLGAHQAQLTALTGQNLQLQLEMKQAKERVRELEVANGGpGGTAANDKAEIARLKTAYESEQLRADLLVQQLSSALSTAKVDYEAGKAQLAEQQA-ARAKKATLHAEASKKRADGFKAIRSEFKQLRDAMLQLQLSTI 217
                 556789999************************************9877651567789999*****************************************99665.5667899************99999999999999999999988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (221 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       205  (0.0499756); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.24u 0.14s 00:00:00.38 Elapsed: 00:00:00.37
# Mc/sec: 788.37
//
Query:       MMETSP1137-20121227|2179_1  [L=91]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (91 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        61  (0.0148708); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.42
# Mc/sec: 285.98
//
Query:       MMETSP1137-20121227|2180_1  [L=44]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (44 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        37  (0.00901999); expected 82.0 (0.02)
Passed bias filter:                       35  (0.00853242); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.17s 00:00:00.27 Elapsed: 00:00:00.28
# Mc/sec: 200.26
//
Query:       MMETSP1137-20121227|2181_1  [L=112]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (112 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        47  (0.0114578); expected 82.0 (0.02)
Passed bias filter:                       41  (0.00999512); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.18s 00:00:00.32 Elapsed: 00:00:00.44
# Mc/sec: 335.97
//
Query:       MMETSP1137-20121227|2182_1  [L=64]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        44  (0.0107265); expected 82.0 (0.02)
Passed bias filter:                       33  (0.00804486); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.26
# Mc/sec: 324.90
//
Query:       MMETSP1137-20121227|2183_1  [L=322]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (322 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       120  (0.029254); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.13s 00:00:00.40 Elapsed: 00:00:00.35
# Mc/sec: 1214.30
//
Query:       MMETSP1137-20121227|2184_1  [L=250]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0062   14.5   0.0       0.52    8.3   0.0    2.2  2  TIGR02378 nirD_assim_sml: nitrite reductase [NAD(P)H], small subunit


Domain annotation for each model (and alignments):
>> TIGR02378  nirD_assim_sml: nitrite reductase [NAD(P)H], small subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.1   0.0    0.0026        11      26      47 ..     105     125 ..      87     135 .. 0.78
   2 !    8.3   0.0   0.00013      0.52      63      96 ..     166     200 ..     138     212 .. 0.83

  Alignments for each domain:
  == domain 1    score: 4.1 bits;  conditional E-value: 0.0026
   TIGR02378  26 lAiFrvkkkevyAiqnlcPhkr 47 
                 l +++ +++ ++A+q+ cPh r
  MMETSP1137-20121227|2184_1 105 LVVWYRQGS-LWAMQEACPHAR 125
                 566666566.9*********97 PP

  == domain 2    score: 8.3 bits;  conditional E-value: 0.00013
   TIGR02378  63 lvvacPlhkrkfeLedGkcledd.evsvktfevrv 96 
                 ++++cP h   f+  +G+cl ++  +s +++ v+ 
  MMETSP1137-20121227|2184_1 166 PCIVCPAHMYVFDCGNGACLTNElTQSARVYAVKT 200
                 689****************9877367788888886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (250 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        99  (0.0241346); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.22u 0.17s 00:00:00.39 Elapsed: 00:00:00.31
# Mc/sec: 1064.43
//
Query:       MMETSP1137-20121227|2185_1  [L=118]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (118 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        67  (0.0163335); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.15s 00:00:00.29 Elapsed: 00:00:00.50
# Mc/sec: 311.49
//
Query:       MMETSP1137-20121227|2186_1  [L=617]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.6e-21   73.1   0.2    3.6e-21   72.6   0.1    1.1  1  TIGR03903 TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
    7.8e-09   32.7   0.0    4.7e-08   30.1   0.0    1.9  1  TIGR03992 Arch_glmU: UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase
    1.8e-08   31.5   0.0    3.4e-08   30.6   0.0    1.4  1  TIGR01208 rmlA_long: glucose-1-phosphate thymidylyltransferase
    8.4e-08   29.7   0.0    1.3e-07   29.1   0.0    1.2  1  TIGR03724 arch_bud32: Kae1-associated kinase Bud32
  ------ inclusion threshold ------
      0.022   11.4   0.0      0.037   10.7   0.0    1.3  1  TIGR01173 glmU: UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase
      0.038   11.3   0.0      0.073   10.3   0.0    1.4  1  TIGR02623 G1P_cyt_trans: glucose-1-phosphate cytidylyltransferase


Domain annotation for each model (and alignments):
>> TIGR03903  TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.6   0.1   5.2e-24   3.6e-21       6     236 ..     316     543 ..     313     551 .. 0.80

  Alignments for each domain:
  == domain 1    score: 72.6 bits;  conditional E-value: 5.2e-24
   TIGR03903   6 vaikllRedaaeeerlvaRFrReialCarLshPnivaLlDsGeaedgllFavFeyveGrtlrevLaadG..aLpaaetgrLmlqvLDalaaahdaGvvhRDLkPqnimvsaadveshakvLDFGigaLlpgvedadeatltrttevlGsPaYaaPeqLRg.........epvtaksDlYaWGLivleCLtGkrvvqGasvaevlykqLsPvdvslPsaiaghpLgevLRkalnkdvrqRaas 236
                  a+k++R+ +  +    +    e+ + ++L+h +iv+++D  +  d   + v e +eG  l + +  +    Lp     r     L al +ah++G+vh D+kP+ni + a+    h  + D+G+ aL pgv+d        +  + G+PaY+aPeqL g           v ++ D+++ G+ + e L G+   + +s   vl + +      +P+ + + p  +v+ + l+  + +Ra+ 
  MMETSP1137-20121227|2186_1 316 LAVKVVRKGQEAHDNMERQIIWEVHVLQKLYHEHIVRVMDVIDVVD-ATYIVMEQIEGPELSDFIRWQPlrRLPVDRACRFFCHLLAALNHAHARGIVHCDIKPENIRLDAT--CAHVVLTDWGL-ALSPGVKD--------EPVLRGTPAYSAPEQLTGydadticgkRCVSPAIDVWSLGVTLYEMLCGHLPFDCESD-VVLLRSVLRLRYVFPEHLPAEPR-AVIDSMLQVAPCERATI 543
                 689*****97777777778899*********************999.89**************998885327***********************************99876..4678889***9.7*******........44456***********984333333334688999***************987777764.34555555555556666666664.35555555555555555 PP

>> TIGR03992  Arch_glmU: UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.1   0.0   6.8e-11   4.7e-08      16     208 ..      17     233 ..       5     240 .. 0.74

  Alignments for each domain:
  == domain 1    score: 30.1 bits;  conditional E-value: 6.8e-11
   TIGR03992  16 PltetrpKvllpvagkpllehliealkeagieelvlvvgyekekvkeyfgdksklgveveyveqee.qlGtadAlkaakekv..ddeflvlngDvlleseeleklieaee.....aaiavvevedpsdyGvvev.eeg.......kvteiv..EKp.......eeppsnliNaGiYlleeeifellekvklSeRgElEltdalkalieeekvkaveld 208
                 P    +p++l++v g+p++ hl++ l++agi + v+ +g++++ +++ +  ++   ++ve+v  ++ ++G a  ++a +++   d+ f+v+ +D l++ + +e++++ +      a++++  + +  ++      +e         + +++  EK+       + p  + + aG+Y++++++fe+l+++ +       l da++ l+e++++k+++++
  MMETSP1137-20121227|2186_1  17 PDSYANPRQLIQVNGTPVIIHLLKGLQAAGILRAVVTLGHAASLLEKAVRAEHFGAMSVEFVLCHSwKRGHASNIMASRSMFgpDEPFIVVMSDHLFDWRLIERMTHIQLsastdAVVLIDDTPEMVEWACGAHcDEHckqghcqVLVKVQraEKNqvanigsRLPFFDALEAGMYVVNSRLFEVLHELLAT-SIYCKLCDAMQILAERGRIKYFSTA 233
                 556678********************************************9988899****98765378*********9999889*******************9877654556555555556665555443331222333444322222211333221111123344567899999999999999887544.4567899999999999999988765 PP

>> TIGR01208  rmlA_long: glucose-1-phosphate thymidylyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.6   0.0     5e-11   3.4e-08      14     134 ..      16     138 ..       6     238 .. 0.82

  Alignments for each domain:
  == domain 1    score: 30.6 bits;  conditional E-value: 5e-11
   TIGR01208  14 rPltftrakqlipvankPilqyaiedlveagikdigivvseetkeeikeivgegekfg.vkityilqke.plGlahavlvardflg.dedfvvylGdnlleegikkfvksfe.ekdldalillkk 134
                  P  +++++qli+v + P++ + ++ l  agi    + +++  +  ++++v+  e+fg + ++++l +  ++G a  ++ +r ++g de+f+v + d l+   + + + + + ++++da++l+ +
  MMETSP1137-20121227|2186_1  16 TPDSYANPRQLIQVNGTPVIIHLLKGLQAAGILRAVVTLGH-AASLLEKAVRA-EHFGaMSVEFVLCHSwKRGHASNIMASRSMFGpDEPFIVVMSDHLFDWRLIERMTHIQlSASTDAVVLIDD 138
                 4889*****************************99999998.88999999996.777626899998765378***********9875889***********998888888772456677777655 PP

>> TIGR03724  arch_bud32: Kae1-associated kinase Bud32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.1   0.0     2e-10   1.3e-07      45     136 ..     336     438 ..     328     448 .. 0.79

  Alignments for each domain:
  == domain 1    score: 29.1 bits;  conditional E-value: 2e-10
   TIGR03724  45 rkEarllseakka.gvntPvvydvdpeekkivmeyiegkklkdlleekel.........ellkevGelvgklHkagivhgDlttsNiiv..kddklyliDfGLg 136
                 + E+++l++++++  v++  v+dv +  + ivme+ieg +l+d ++ + l         +++ ++  ++++ H  givh D+ ++Ni++  +  +++l D GL+
  MMETSP1137-20121227|2186_1 336 IWEVHVLQKLYHEhIVRVMDVIDVVDA-TYIVMEQIEGPELSDFIRWQPLrrlpvdracRFFCHLLAALNHAHARGIVHCDIKPENIRLdaTCAHVVLTDWGLA 438
                 568888888765415788888898776.89****************98778899995555555555566677*****************4336789999***98 PP

>> TIGR01173  glmU: UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   5.5e-05     0.037      17     111 ..      21     124 ..       5     142 .. 0.75

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 5.5e-05
   TIGR01173  17 klpKvLhelagkpmlehvieaarklsaekivvvlghgaeevkealkees.....vkfvlq.eeqlgTghAvkqalkalseeeeevlvlyg...DvPLisketle 111
                 + p+ L ++ g p++ h ++  ++    + vv lgh a  +++a+++e+     v+fvl  + + g +  +++  +++ ++e  ++v++    D  Li++ t  
  MMETSP1137-20121227|2186_1  21 ANPRQLIQVNGTPVIIHLLKGLQAAGILRAVVTLGHAASLLEKAVRAEHfgamsVEFVLChSWKRGHASNIMASRSMFGPDEPFIVVMSDhlfDWRLIERMTHI 124
                 679999***************************************99988888877776515577888889999999986665555554322244455554444 PP

>> TIGR02623  G1P_cyt_trans: glucose-1-phosphate cytidylyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   0.00011     0.073      13      61 ..      13      62 ..       4      87 .. 0.84

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 0.00011
   TIGR02623 13 rise.etalrpkpmveiggkpilwhilkiysaygikefiiclgykgyvik 61
                r+s  ++  +p+ ++++ g p++ h+lk  +a gi   ++ lg+   ++ 
  MMETSP1137-20121227|2186_1 13 RLSTpDSYANPRQLIQVNGTPVIIHLLKGLQAAGILRAVVTLGHAASLLE 62
                5554267889*********************************9877664 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (617 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       115  (0.0280351); expected 82.0 (0.02)
Passed bias filter:                      102  (0.0248659); expected 82.0 (0.02)
Passed Vit filter:                        18  (0.0043881); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.50u 0.16s 00:00:00.66 Elapsed: 00:00:00.73
# Mc/sec: 1115.58
//
Query:       MMETSP1137-20121227|2187_1  [L=85]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (85 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        32  (0.00780107); expected 82.0 (0.02)
Passed bias filter:                       21  (0.00511945); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.15s 00:00:00.29 Elapsed: 00:00:00.40
# Mc/sec: 280.48
//
Query:       MMETSP1137-20121227|2188_1  [L=78]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (78 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        24  (0.0058508); expected 82.0 (0.02)
Passed bias filter:                       24  (0.0058508); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.13s 00:00:00.25 Elapsed: 00:00:00.25
# Mc/sec: 411.81
//
Query:       MMETSP1137-20121227|2189_1  [L=277]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (277 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        68  (0.0165773); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.17s 00:00:00.40 Elapsed: 00:00:00.34
# Mc/sec: 1075.32
//
Query:       MMETSP1137-20121227|2190_1  [L=60]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        79  (0.0192589); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.17s 00:00:00.28 Elapsed: 00:00:00.25
# Mc/sec: 316.77
//
Query:       MMETSP1137-20121227|2191_1  [L=63]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (63 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        57  (0.0138957); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.25
# Mc/sec: 332.61
//
Query:       MMETSP1137-20121227|2192_1  [L=161]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (161 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       107  (0.0260848); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.16s 00:00:00.35 Elapsed: 00:00:00.31
# Mc/sec: 685.49
//
Query:       MMETSP1137-20121227|2194_1  [L=267]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (267 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       145  (0.0353486); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.12s 00:00:00.34 Elapsed: 00:00:00.41
# Mc/sec: 859.54
//
Query:       MMETSP1137-20121227|2195_1  [L=223]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (223 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       103  (0.0251097); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.12s 00:00:00.31 Elapsed: 00:00:00.33
# Mc/sec: 891.93
//
Query:       MMETSP1137-20121227|2196_1  [L=221]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (221 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        77  (0.0187713); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.16s 00:00:00.35 Elapsed: 00:00:01.34
# Mc/sec: 217.68
//
Query:       MMETSP1137-20121227|2197_1  [L=97]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (97 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        60  (0.014627); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.10s 00:00:00.25 Elapsed: 00:00:00.33
# Mc/sec: 387.97
//
Query:       MMETSP1137-20121227|2198_1  [L=69]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.67    8.2   7.3       0.72    8.1   5.1    1.0  1  TIGR01300 CPA3_mnhG_phaG: monovalent cation/proton antiporter, MnhG/PhaG subunit


Domain annotation for each model (and alignments):
>> TIGR01300  CPA3_mnhG_phaG: monovalent cation/proton antiporter, MnhG/PhaG subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   5.1   0.00017      0.72      29      79 ..      15      65 ..       8      69 .] 0.88

  Alignments for each domain:
  == domain 1    score: 8.1 bits;  conditional E-value: 0.00017
   TIGR01300 29 AatkattlGtilillgvaliallkelevalklllillfilltnPvgahlla 79
                 at  tt +++++ + ++++++++++ +++++++ +++i+ ++P+++ + +
  MMETSP1137-20121227|2198_1 15 TATETTTTAAAAAAITISITTTTTTAITIITAIIDAVVITTATPLSQAMXG 65
                58999999999999999999999999999***************9977655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (69 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       384  (0.0936129); expected 82.0 (0.02)
Passed bias filter:                      139  (0.0338859); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.13u 0.14s 00:00:00.27 Elapsed: 00:00:00.49
# Mc/sec: 185.86
//
Query:       MMETSP1137-20121227|2198_2  [L=43]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (43 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       528  (0.128718); expected 82.0 (0.02)
Passed bias filter:                      309  (0.0753291); expected 82.0 (0.02)
Passed Vit filter:                        41  (0.00999512); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.15s 00:00:00.30 Elapsed: 00:00:00.30
# Mc/sec: 189.18
//
Query:       MMETSP1137-20121227|2199_1  [L=148]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (148 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        37  (0.00901999); expected 82.0 (0.02)
Passed bias filter:                       32  (0.00780107); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.13s 00:00:00.28 Elapsed: 00:00:00.28
# Mc/sec: 697.66
//
Query:       MMETSP1137-20121227|2200_1  [L=170]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (170 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        38  (0.00926377); expected 82.0 (0.02)
Passed bias filter:                       35  (0.00853242); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.16s 00:00:00.34 Elapsed: 00:00:00.35
# Mc/sec: 641.09
//
Query:       MMETSP1137-20121227|2201_1  [L=74]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (74 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       133  (0.0324232); expected 82.0 (0.02)
Passed bias filter:                      120  (0.029254); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.18s 00:00:00.31 Elapsed: 00:00:00.31
# Mc/sec: 315.07
//
Query:       MMETSP1137-20121227|2202_1  [L=64]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        2.8    5.9  16.1        2.6    6.0   2.6    2.5  2  TIGR04071 methanobac_OB3b: methanobactin precursor, Mb-OB3b family


Domain annotation for each model (and alignments):
>> TIGR04071  methanobac_OB3b: methanobactin precursor, Mb-OB3b family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   2.6   0.00063       2.6      14      24 ..       2      12 ..       1      13 [. 0.93
   2 ?    5.5   3.1    0.0009       3.7      14      24 ..      36      46 ..      34      47 .. 0.93

  Alignments for each domain:
  == domain 1    score: 6.0 bits;  conditional E-value: 0.00063
   TIGR04071 14 igRAGalCGSC 24
                +gRAG + GSC
  MMETSP1137-20121227|2202_1  2 AGRAGGQLGSC 12
                7********** PP

  == domain 2    score: 5.5 bits;  conditional E-value: 0.0009
   TIGR04071 14 igRAGalCGSC 24
                +gRAG + GSC
  MMETSP1137-20121227|2202_1 36 AGRAGGQLGSC 46
                8********** PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        53  (0.0129205); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.13u 0.12s 00:00:00.25 Elapsed: 00:00:00.24
# Mc/sec: 351.97
//
Query:       MMETSP1137-20121227|2203_1  [L=437]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.2e-57  192.7   2.0    2.9e-57  192.3   1.4    1.1  1  TIGR00817 tpt: Tpt phosphate/phosphoenolpyruvate translocator
    7.4e-10   36.5  23.3    5.9e-09   33.6  15.6    2.3  1  TIGR00950 2A78: carboxylate/amino acid/amine transporter


Domain annotation for each model (and alignments):
>> TIGR00817  tpt: Tpt phosphate/phosphoenolpyruvate translocator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  192.3   1.4   1.4e-60   2.9e-57       2     299 ..     104     406 ..     103     410 .. 0.94

  Alignments for each domain:
  == domain 1    score: 192.3 bits;  conditional E-value: 1.4e-60
   TIGR00817   2 qtgllfllwyvlnvyFnivnkkllklfhypvlktlvslavgvllellswssilkkrlkiskallklllpvaivhtighvtsnvslskvavSfthtikalepifsvvlskfflgrefpltlylsLlpivlGvalasltelsfnllgflsamisniefvarnifsKkiltkk......sldklnlyalisililfllspiafiveglklltreflqaiskvnvlklvtvslvaalgifHlyqqvafqllervspltysvgNvlKRvvvIvvSilffetkisflqvlGvilaiaGvflYskvkakkk 299
                 ++ ++f+lwy+l v++ + nk++ ++++ p++++ + + vg++ +   w+s+  + + +s+a +  llp++ +h+igh++ +v  ++ +vSf  ++k+  p++  vls+++l++++   ++lsLlpiv+Gvala+l+elsf ++++  a++s ++   rn++sK  + ++       l+  n + +++ ++  ++ p a++ eg+   ++  + a      l l  +  +  l  f  y  va++ l++v p+t+++gN+l+Rv+++ v +l+f+t+++ + ++G +la+ G ++Y  vk++  
  MMETSP1137-20121227|2203_1 104 KLTVYFGLWYLLSVGYSVTNKHVTNALPLPWTVAAATVVVGSVFVGALWASGAREPPRLSTAAMRRLLPIGAFHAIGHIAGTVGTAAGSVSFAQVVKSTGPVYACVLSALVLRQSVSPRVWLSLLPIVGGVALATLKELSFAWVALAGAVVSDLALALRNVYSKASMDTQsandmpPLSPANHFGVLTCVSAAISVPLAVVAEGPAAAAAWRVAAPTRAAALALLGQIGLTGL-YFYGYSEVAMKALKNVHPVTHAIGNTLRRVIIMLVCMLVFRTPMTAVGAVGSALAVGGSYIYAMVKTQES 406
                 6789*****************************************************************************************************************9**************************************************9988877778888999999999999***********99999766777777777777777767776.788899***********************************************************99854 PP

>> TIGR00950  2A78: carboxylate/amino acid/amine transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.6  15.6   2.9e-12   5.9e-09      25     258 ..     140     390 ..     119     396 .. 0.69

  Alignments for each domain:
  == domain 1    score: 33.6 bits;  conditional E-value: 2.9e-12
   TIGR00950  25 rlifallllLpllrlr......nslkrllrllllgalqlgvfyvllflavkkltvaiaalllvlaPlyvtllsdllekervrkkkllAavlalaGivlllsdgnlsislaGlllgllsgisfAlgtvlakrlvkkeg....lellqftgfvvlli.GallllpfalllgpnlqalpatslqwlallyLgligtllayfly........nkglkevdasaasilalleplvallLgllilgetlslvqliggal 258
                  ++++++++ +l+ +        s   + rll +ga+  ++     ++     +v++a ++ ++ P+y+ +ls l+ ++ v+ +++l+++  + G v l + ++ls+ + +l  +++s ++ Al  v++k+ + +++    ++l++++ f+vl + +a++ +p+a+++++++ a +    +   +++L+l+g +    ly        +k+lk+v +++ +i ++l  +  +l+ +l++   ++ v  +g al
  MMETSP1137-20121227|2203_1 140 TVVVGSVFVGALWASGarepprLSTAAMRRLLPIGAFH-AIGHIAGTVGTAAGSVSFAQVVKSTGPVYACVLSALVLRQSVSPRVWLSLLPIVGG-VALATLKELSFAWVALAGAVVSDLALALRNVYSKASMDTQSandmPPLSPANHFGVLTCvSAAISVPLAVVAEGPAAAAAWRVAAPTRAAALALLGQIGLTGLYfygysevaMKALKNVHPVTHAIGNTLRRVIIMLVCMLVFRTPMTAVGAVGSAL 390
                 56666666666666666443333333444444444443.2333344455556899*********************************9877777.88999*********************************998433356788999****8725555566666666666544433333345677777775554555500113333456788888888888888888888888888877777777666666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (437 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       165  (0.0402243); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.34u 0.16s 00:00:00.50 Elapsed: 00:00:00.34
# Mc/sec: 1696.45
//
Query:       MMETSP1137-20121227|2204_1  [L=656]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (656 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       122  (0.0297416); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.16s 00:00:00.59 Elapsed: 00:00:00.36
# Mc/sec: 2405.13
//
Query:       MMETSP1137-20121227|2205_1  [L=793]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.34    6.4   7.3       0.63    5.5   5.0    1.3  1  TIGR02102 pullulan_Gpos: pullulanase, extracellular


Domain annotation for each model (and alignments):
>> TIGR02102  pullulan_Gpos: pullulanase, extracellular
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   5.0   0.00015      0.63     994    1101 ..     576     688 ..     564     698 .. 0.57

  Alignments for each domain:
  == domain 1    score: 5.5 bits;  conditional E-value: 0.00015
   TIGR02102  994 ldpltavvvkvgekeasektapkkeeeseadkekkedkdeskdkdkvaeaenkesktpagskken.....eeveksskekkeekldkeaklpktaeksskllllagiilllll 1101
                  l +l++v +k +  ea e+  +  e+e+e++ e +e+ +e++++++++ ++++e +   + ++e+     +e e  ++ k e k +++a  p +a+ ++ + + +g+ + + l
  MMETSP1137-20121227|2205_1  576 LRALATVALKPAGAEAGEEEQAAGEKEEEEKGEVEEEAEEEEEEEEEEGEDEEEGEGEDEDEDEEmeeaaDEEEGVEEAKAETKSGEGAAAPASATINKAKQSKSGLEAYAHL 688 
                  67899999999988888755554444444443333333333322222222222222211111111222324455555667777788899999999999888888887666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (793 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       226  (0.0550951); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                        19  (0.00463189); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.64u 0.18s 00:00:00.82 Elapsed: 00:00:00.97
# Mc/sec: 1079.04
//
Query:       MMETSP1137-20121227|2206_1  [L=1022]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.1e-16   57.4   0.0    2.1e-10   38.2   0.0    3.2  3  TIGR02152 D_ribokin_bact: ribokinase
     0.0093   12.9   1.0      0.015   12.2   0.0    1.8  2  TIGR02198 rfaE_dom_I: bifunctional protein RfaE, domain I


Domain annotation for each model (and alignments):
>> TIGR02152  D_ribokin_bact: ribokinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.2   0.0     1e-13   2.1e-10       2     102 ..     200     309 ..     199     336 .. 0.77
   2 !    3.0   0.0    0.0057        12     128     164 ..     434     470 ..     423     538 .. 0.82
   3 !   12.3   0.0   8.2e-06     0.017     235     296 ..     609     670 ..     588     672 .. 0.87

  Alignments for each domain:
  == domain 1    score: 38.2 bits;  conditional E-value: 1e-13
   TIGR02152   2 vvvGSinvDlvlrvkrlpkpGetvkae...efkiaaGGKGANQAvaaarlgaevsmigkvGkDefgeellenlkkeg.....idteyvkkv.kktstGvAlilvdeegeN 102
                 +v+GSi +Dl + v+ l ++ + ++ +    f+  +GGK AN Av   +lg +++++++vG D++g +ll++l+k +     +d++ v++  ++++tGv + ++++ +e 
  MMETSP1137-20121227|2206_1 200 LVFGSITMDLHAVVDGLVRKSDLLRLSalgRFTASPGGKAANEAVGLCKLGVRTHLVARVGFDAMGVSLLKELSKVQaqhpsLDISGVTTAeSDVATGVSVQILAHAAEE 309
                 69********************9987745578999************************************998765111225666666541466777776666655554 PP

  == domain 2    score: 3.0 bits;  conditional E-value: 0.0057
   TIGR02152 128 esdlvllQlEipletveealkiakkagvkvllnPAPa 164
                 e  ++llQlE+++e ++  + +a+++g+ v l   P 
  MMETSP1137-20121227|2206_1 434 EVGVLLLQLEVSTEPMRVLAAAAREQGKLVALKASPL 470
                 56789*************************9998886 PP

  == domain 3    score: 12.3 bits;  conditional E-value: 8.2e-06
   TIGR02152 235 ipalkvkavDttaAGDtFigalavaLaegksledavrfanaaaalsVtrkGaqssiPtkeev 296
                 +p ++ k vD  +  D+F+ +++     g sl++a+  +   + ls    Gaq+++P+++e+
  MMETSP1137-20121227|2206_1 609 LPCTRRKLVDSLGFKDAFVSGFVGGHCIGLSLREALLWGYGSSVLSLSAPGAQAGLPSRDEL 670
                 57888899****************************************************97 PP

>> TIGR02198  rfaE_dom_I: bifunctional protein RfaE, domain I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.2   0.0   7.5e-06     0.015      46      91 ..     234     280 ..     199     327 .. 0.80
   2 ?   -3.3   0.1       0.4   8.2e+02     260     287 ..     376     401 ..     371     406 .. 0.68

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 7.5e-06
   TIGR02198  46 rlGG.AaNvakNlasLgaevvlvgvvGkDeagkaleellkeegiets 91 
                  +GG AaN a  l +Lg+++ lv+ vG D  g +l + l++ ++++ 
  MMETSP1137-20121227|2206_1 234 SPGGkAANEAVGLCKLGVRTHLVARVGFDAMGVSLLKELSKVQAQHP 280
                 455449*****************************999998887732 PP

  == domain 2    score: -3.3 bits;  conditional E-value: 0.4
   TIGR02198 260 DVtGAGDtViavlalalaagasleeaae 287
                 DV+  GD V  +l+l    g+  +ea e
  MMETSP1137-20121227|2206_1 376 DVSVCGDEVAYALSL--LRGEAAKEASE 401
                 9999****9766655..55555555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1022 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        88  (0.0214529); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.58u 0.15s 00:00:00.73 Elapsed: 00:00:00.69
# Mc/sec: 1954.97
//
Query:       MMETSP1137-20121227|2207_1  [L=408]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (408 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       116  (0.0282789); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.19s 00:00:00.46 Elapsed: 00:00:00.45
# Mc/sec: 1196.70
//
Query:       MMETSP1137-20121227|2208_1  [L=193]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (193 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        74  (0.01804); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.15s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 878.41
//
Query:       MMETSP1137-20121227|2209_1  [L=1070]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.7e-49  165.9   0.0    2.7e-32  109.9   0.0    2.2  2  TIGR00387 glcD: glycolate oxidase, subunit GlcD
    1.6e-08   31.5   0.3    7.4e-07   26.1   0.2    2.6  2  TIGR03379 glycerol3P_GlpC: glycerol-3-phosphate dehydrogenase, anaerobic, C subunit
    1.9e-06   24.9   0.0    3.1e-06   24.2   0.0    1.2  1  TIGR01678 FAD_lactone_ox: sugar 1,4-lactone oxidases
      7e-05   20.2   0.3    0.00016   19.1   0.2    1.6  1  TIGR00384 dhsB: succinate dehydrogenase and fumarate reductase iron-sulfur protein
    0.00022   18.7   4.4      0.012   13.0   3.0    2.4  1  TIGR01971 NuoI: NADH-quinone oxidoreductase, chain I
     0.0012   16.6   3.6      0.015   13.1   2.5    2.6  1  TIGR03290 CoB_CoM_SS_C: CoB--CoM heterodisulfide reductase, subunit C
     0.0026   14.2   0.7      0.092    9.1   0.0    2.1  2  TIGR01945 rnfC: electron transport complex, RnfABCDGE type, C subunit
     0.0051   13.5   3.6      0.025   11.3   2.5    1.9  1  TIGR00273 TIGR00273: iron-sulfur cluster-binding protein
  ------ inclusion threshold ------
      0.014   11.0   0.3      0.021   10.4   0.2    1.1  1  TIGR02176 pyruv_ox_red: pyruvate:ferredoxin (flavodoxin) oxidoreductase
      0.021   12.5   1.6      0.035   11.8   1.1    1.2  1  TIGR02486 RDH: reductive dehalogenase
       0.49    7.2   4.4       0.47    7.2   0.1    2.5  3  TIGR02066 dsrB: sulfite reductase, dissimilatory-type beta subunit


Domain annotation for each model (and alignments):
>> TIGR00387  glcD: glycolate oxidase, subunit GlcD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.8   0.1   7.8e-18   2.9e-15       2     140 ..     123     270 ..     122     287 .. 0.80
   2 !  109.9   0.0   7.3e-35   2.7e-32     149     412 ..     332     617 ..     306     618 .. 0.81

  Alignments for each domain:
  == domain 1    score: 53.8 bits;  conditional E-value: 7.8e-18
   TIGR00387   2 vlPknteqvarilklCserrikvvprGagtglsGgalpeegglvl.vfkrlnkileideenltavvqPGvinkeleeave....ek....nlfyppDPssqkastiGGniaenaGGlrglkYGvtvdyvlglevvladGeilriggkt 140
                 v  + +e+v ++l    e+  +v  r agt lsG a++ +  + l    +  +  +i+ e+++++ +PG i  e+++ ++    ++    ++   pDP+s +++ iGG +a+n+ G+ +     t + +  ++vvl dG +l++ +  
  MMETSP1137-20121227|2209_1 123 VRVHSEEEVVQVLSAAREHDTPVTFRAAGTSLSGQAITDSVLMKLsHNGKAWRRYKIEDEGRKVTLEPGLIGGEVNKLLAaykkKHkcdtQYKIGPDPASIESCMIGGIVANNSSGMCCGVAQNTYHTLQDMRVVLVDGTVLDTADAA 270
                 556789******************************97543333323345556689**************9888877664222222222257789*************************999*******************976544 PP

  == domain 2    score: 109.9 bits;  conditional E-value: 7.3e-35
   TIGR00387 149 ltkLlvgsEGtLgivteiilkllpkPelkkvllavfdsiekaaqavadiiaagiiPaalEflDnlsikavedvvk.......ig.ypve.akaillveldgveeeverd.lekveeilkknga........vdvkiaqdeeerlklwaarknAlkavskls...pkvlveDvtvPrsklpevlkeiaeiaskyddf..ilivgHaGDGnlHpliltdeeekeelerveelleeilel.avelgGtisgEHGiGvekaeemklkfnekeleimravkkafdPknilnPg 412
                 l ++++gsEGtLg v++++   +p  ++k ++  vf +ie+a  a +++ + +    a+E++D  s+k   ++++       i+ +p + ++a+ll+e  g + ++     + v + l+ +g+        +      d +e   +w ark  ++ v+      +++l+eDv+    kl  + k++  i +ky+ +   +++gHa +GnlH +   + ++  el+r e+l+++i e+ a++ gG++ +EHG G++ a +++++   k+ ++m +vk++fdPk +lnPg
  MMETSP1137-20121227|2209_1 332 LKRIMIGSEGTLGFVSRVTYNTVPDLPNKASAFLVFPDIEDACAATSVLRS-KTKVDAVEIFDRRSLKLCGQMSEmarlcpeINkLPEDgEGAALLIECRGIDADALAAsISSVCDALQSSGVpvnsasgfTPKSFREDPAEYNVFWDARKGLIPIVGGARetgSSMLLEDVACTTDKLGAMSKDLIGIFKKYG-YddACLMGHALEGNLHLIFNQSFKNSTELKRYENLMQDICENvALKYGGSLKAEHGTGRNVAPFVEMEWGTKAYQLMWEVKRLFDPKFLLNPG 617
                 7799***************************************97666555.5555679*********98777651112222445677635789999999988776555545555554443331100000033444556668999**********99866555699***********************88877.55899*************9*********************8549************************************************8 PP

>> TIGR03379  glycerol3P_GlpC: glycerol-3-phosphate dehydrogenase, anaerobic, C subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.3     0.036        13      50      72 ..     640     658 ..     622     684 .. 0.69
   2 !   26.1   0.2     2e-09   7.4e-07      49     340 ..     701    1006 ..     642    1018 .. 0.72

  Alignments for each domain:
  == domain 1    score: 2.2 bits;  conditional E-value: 0.036
   TIGR03379  50 alkyctnckrcevacpsdvkigd 72 
                 ++  c+ c  ce  cps     d
  MMETSP1137-20121227|2209_1 640 LVDRCISCGWCESNCPSR----D 658
                 567799999999999994....4 PP

  == domain 2    score: 26.1 bits;  conditional E-value: 2e-09
   TIGR03379   49 ealkyctnckrcevacpsdvkigdliararakysakkp.....nikklrdavls.htdllgslstplapi...vnaitglkavkklldkalkvskkrtlpkys....fgtfrrwykknaesqakyeeqvayfhgcyvnynhpqlgkd..........lvkvlnalnigvqlle..kekccgvplivngfldkakkqaklnvksleevveekeidviatssscsltlrdeyphvlevdnakvrdkielvtrflykefkegktlklkplklkvayhtpchlekagwalytlellkkipglelvvldsqccgiagtygfk 340 
                   a   c     c+  cp +++ g+l++  r++  + k      +   + + + +    ++g+l      +   v  i g  +++k+ d+  +v ++  lp +      g+      + +   a  ++qv+y   c      p  g +          ++++ln  +  v + e  +  ccg+ +   g+ d  k qa+   ++l ++ ++  i++++++s c   +++++++ +   +  + + +++++ +l        +l++  ++  va h pc  +k   +   ++l  ++ + e+   +  ccg+ag  g++
  MMETSP1137-20121227|2209_1  701 YAEATCAADGMCQEKCPVKINTGELVKTLRQQELEGKEgeatpRGAAVAQWLAArYGPIMGALPPM-LDVvsfVHGIVGTWPMQKIADAVWGVGNN-MLPLWNpympRGAKPLKVPEPKPAAAAERKQVVYLPSCVTRSMGPARGDEaaagepvhakFLSLLNKADYEVVIPEgvSSACCGMVFDSRGYRDAGKTQASALEQTLLKASDNGRIPIVCDTSPCLHRMKEKFENPM--LKFALFEPVQFIATHLKD------RLSFSKVRDTVAVHVPCSSKKLKLNDQMVQLA-EMCAHEVHATPIPCCGMAGDRGMR 1006
                  445567777889999999999999999998887444431100133344444433135688887644.33401145556667889999999998765.56655511013444344444455666778899999999998888887764333333333489999*999999998744689**************************************************998632..334566777777666654......567888999************99998888765.56778**************99987 PP

>> TIGR01678  FAD_lactone_ox: sugar 1,4-lactone oxidases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.2   0.0   8.2e-09   3.1e-06       8     161 ..     112     278 ..     106     297 .. 0.78

  Alignments for each domain:
  == domain 1    score: 24.2 bits;  conditional E-value: 8.2e-09
   TIGR01678   8 akiysakperyfqPksveevrellksareaekklkvvGsGhsPsdivvtdgylvsld...klnkvlkfdeekaditveaGirlyqlneilde.....kGyslsnlG....sisevsvaGiistgthgssl.khgllssqvvaltivladGellelseerdkdvfkaa 161
                 a  y  +p+     +s+eev+++l  are++  +    +G s s  ++td  l++l    k  +  k+++e +++t+e G+   ++n++l +     k  +  ++G    si    + Gi++  + g      +   + ++ +++vl dG +l   +   ++ f+ +
  MMETSP1137-20121227|2209_1 112 ASFYRLNPQAVVRVHSEEEVVQVLSAAREHDTPVTFRAAGTSLSGQAITDSVLMKLShngKAWRRYKIEDEGRKVTLEPGLIGGEVNKLLAAykkkhKCDTQYKIGpdpaSIESCMIGGIVANNSSGMCCgVAQNTYHTLQDMRVVLVDGTVLDTADAASREAFAQS 278
                 67788899999999****************************************99711145556789999*****************997522221222233444444489999999**99887665441344556778899**********99999999999643 PP

>> TIGR00384  dhsB: succinate dehydrogenase and fumarate reductase iron-sulfur protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.2   4.2e-07   0.00016     132     221 ..     634     729 ..     597     730 .. 0.68

  Alignments for each domain:
  == domain 1    score: 19.1 bits;  conditional E-value: 4.2e-07
   TIGR00384 132 eleklkelseCieCglCyssCpakklneeflGPaalakaarfllDsRDeatk..eRl..ealndkkgvy.....sCttvakCsevCPkevdpasaiekl 221
                 + ++   + +Ci+Cg C s+Cp++ l+   l P    ++++ ++  R++ t+  +R+  e l + ++ +     +C   ++C+e CP ++++ + +++l
  MMETSP1137-20121227|2209_1 634 DHAAHPLVDRCISCGWCESNCPSRDLS---LTPRQRIQVYKEMTKMREDFTAsgARYkpERLLAFEASWeyaeaTCAADGMCQEKCPVKINTGELVKTL 729
                 5555666889*************9665...77888888888777777754431134411445567777733333599999***********99888776 PP

>> TIGR01971  NuoI: NADH-quinone oxidoreductase, chain I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   3.0   3.3e-05     0.012      40      67 ..     640     682 ..     624     734 .. 0.62

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 3.3e-05
   TIGR01971  40 GeekCiaCelCakvCpaeaikvvkaee...............e 67 
                   ++Ci+C  C+  Cp++++++++ ++                
  MMETSP1137-20121227|2209_1 640 LVDRCISCGWCESNCPSRDLSLTPRQRiqvykemtkmredftA 682
                 4578888888888888888888777775555555555555551 PP

>> TIGR03290  CoB_CoM_SS_C: CoB--CoM heterodisulfide reductase, subunit C
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.1   2.5     4e-05     0.015       2      75 ..     642     733 ..     641     757 .. 0.60

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 4e-05
   TIGR03290   2 kacyqcGtctGscPs.....grrtayrirklirkaklglk........devlsdddlw..lcttcy...ecqercPrdvkitdvvkalrnla 75 
                 + c+ cG c   cPs     ++r   ++ k + k++ ++         + +l  ++ w    +tc     cqe+cP +++  ++vk+lr+  
  MMETSP1137-20121227|2209_1 642 DRCISCGWCESNCPSrdlslTPRQRIQVYKEMTKMREDFTasgarykpERLLAFEASWeyAEATCAadgMCQEKCPVKINTGELVKTLRQQE 733
                 67************93332223333334444444433332111112224577778888442246642227*******************854 PP

>> TIGR01945  rnfC: electron transport complex, RnfABCDGE type, C subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.1   0.0   0.00025     0.092     387     417 ..     627     657 ..     618     677 .. 0.74
   2 ?    3.3   0.0     0.014         5     359     395 ..     700     736 ..     690     742 .. 0.77

  Alignments for each domain:
  == domain 1    score: 9.1 bits;  conditional E-value: 0.00025
   TIGR01945 387 lakaeeydeaeelnlmDCieCGsCayvCPsk 417
                 +ak+   d+a++  +  Ci CG C  +CPs+
  MMETSP1137-20121227|2209_1 627 HAKNIRLDHAAHPLVDRCISCGWCESNCPSR 657
                 5666667776666666699999999999995 PP

  == domain 2    score: 3.3 bits;  conditional E-value: 0.014
   TIGR01945 359 ekkekaCirCgkCveaCPvsLlPqqlallakaeeyde 395
                 e +e +C   g C e CPv+++  +l ++ +++e + 
  MMETSP1137-20121227|2209_1 700 EYAEATCAADGMCQEKCPVKINTGELVKTLRQQELEG 736
                 4677889999999999999999999988888888775 PP

>> TIGR00273  TIGR00273: iron-sulfur cluster-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.3   2.5   6.7e-05     0.025     294     375 ..     643     736 ..     629     755 .. 0.62

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 6.7e-05
   TIGR00273 294 aCirCgaClneCPvyrk.iGghaygsiypGPiGvvlspllgglkdyk.........elpylsslC...gkCsevCPvkiplaelirelrrdivek 375
                 +Ci Cg C  +CP  +  +   +  ++y      +    + +   yk            y+ + C   g C+e CPvki+  el++ lr++  e 
  MMETSP1137-20121227|2209_1 643 RCISCGWCESNCPSRDLsLTPRQRIQVYKEMT-KMREDFTASGARYKperllafeaSWEYAEATCaadGMCQEKCPVKINTGELVKTLRQQELEG 736
                 68888888888888775245566777776533.3333333332333211111110112344444511267*******************987763 PP

>> TIGR02176  pyruv_ox_red: pyruvate:ferredoxin (flavodoxin) oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.2   5.6e-05     0.021     682     765 ..     641     734 ..     630     746 .. 0.76

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 5.6e-05
   TIGR02176 682 sdkciqcnqcafvcPhaai....ravlldeeelekapegfksldakgkeleglkyriq..vsvedctGcglcvdicPak....eeekalvmkpl 765
                  d+ci c+ c   cP   +    r+ +   +e++k  e f++  a+ k    l ++     +   c   g+c + cP k    e  k+l  ++l
  MMETSP1137-20121227|2209_1 641 VDRCISCGWCESNCPSRDLsltpRQRIQVYKEMTKMREDFTASGARYKPERLLAFEASweYAEATCAADGMCQEKCPVKintgELVKTLRQQEL 734
                 69*************8654223367788889999*********99999999888887511667889999**********443333444444444 PP

>> TIGR02486  RDH: reductive dehalogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   1.1   9.5e-05     0.035     207     279 ..     644     719 ..     640     730 .. 0.69

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 9.5e-05
   TIGR02486 207 CetCgkCAdeCPsqaIskekeptwdveaaek.kesgennpkkkwqydgkkcklf...kckneggsgc..gvCqavCpFn 279
                 C +Cg C  +CPs  +s +++++ +v +  +  ++ e+       y+ +++ +f   + + e + ++  g+Cq+ Cp  
  MMETSP1137-20121227|2209_1 644 CISCGWCESNCPSRDLSLTPRQRIQVYK--EmTKMREDFTASGARYKPERLLAFeasWEYAE-ATCAadGMCQEKCPVK 719
                 99*******************9999855..43455556666666666666655511133432.23323489*****966 PP

>> TIGR02066  dsrB: sulfite reductase, dissimilatory-type beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.0       0.1        39     187     245 ..     368     429 ..     349     444 .. 0.76
   2 ?    7.2   0.1    0.0013      0.47     213     232 ..     641     660 ..     619     675 .. 0.84
   3 ?   -3.8   0.1       2.8     1e+03     211     228 ..     701     718 ..     696     728 .. 0.78

  Alignments for each domain:
  == domain 1    score: 0.9 bits;  conditional E-value: 0.1
   TIGR02066 187 PlvvaacPtaalkpkeekekkslevdeekci.lcGncytn...cpaldladaeddglailvGG 245
                 P +  ac ++++  + +++   +e+ +++ + lcG+  ++   cp ++    +++g+a+l+  
  MMETSP1137-20121227|2209_1 368 PDIEDACAATSVL-RSKTKVDAVEIFDRRSLkLCGQMSEMarlCPEINKLPEDGEGAALLIEC 429
                 5555677655543.3577778999999888746**988766669**9999899999**99965 PP

  == domain 2    score: 7.2 bits;  conditional E-value: 0.0013
   TIGR02066 213 eekcilcGncytncpaldla 232
                 +++ci cG c +ncp+ dl+
  MMETSP1137-20121227|2209_1 641 VDRCISCGWCESNCPSRDLS 660
                 479************98876 PP

  == domain 3    score: -3.8 bits;  conditional E-value: 2.8
   TIGR02066 211 vdeekcilcGncytncpa 228
                   e+ c   G c+++cp 
  MMETSP1137-20121227|2209_1 701 YAEATCAADGMCQEKCPV 718
                 567889999*******84 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1070 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       167  (0.0407118); expected 82.0 (0.02)
Passed bias filter:                      148  (0.03608); expected 82.0 (0.02)
Passed Vit filter:                        33  (0.00804486); expected 4.1 (0.001)
Passed Fwd filter:                        11  (0.00268162); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.86u 0.16s 00:00:01.02 Elapsed: 00:00:00.89
# Mc/sec: 1586.84
//
Query:       MMETSP1137-20121227|2210_1  [L=152]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (152 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        61  (0.0148708); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.11s 00:00:00.28 Elapsed: 00:00:00.28
# Mc/sec: 716.51
//
Query:       MMETSP1137-20121227|2211_1  [L=726]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (726 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        91  (0.0221843); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.21s 00:00:00.64 Elapsed: 00:00:00.59
# Mc/sec: 1624.14
//
Query:       MMETSP1137-20121227|2213_1  [L=73]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (73 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        38  (0.00926377); expected 82.0 (0.02)
Passed bias filter:                       38  (0.00926377); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.18s 00:00:00.27 Elapsed: 00:00:00.26
# Mc/sec: 370.58
//
Query:       MMETSP1137-20121227|2214_1  [L=248]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.016   12.9   0.4      0.037   11.7   0.3    1.7  1  TIGR03042 PS_II_psbQ_bact: photosystem II protein PsbQ


Domain annotation for each model (and alignments):
>> TIGR03042  PS_II_psbQ_bact: photosystem II protein PsbQ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.3   9.1e-06     0.037      95     140 ..     171     216 ..     147     217 .. 0.91

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 9.1e-06
   TIGR03042  95 keakklakelkedLeklDeAAklqdkseaqkayqevaadldayldl 140
                 ++a++la  +  +L+ lD+A  ++++ e   + q+++++++a+l+l
  MMETSP1137-20121227|2214_1 171 ADADALAETFATQLQALDTACVQRSAAEQIDQLQNIEQTISAFLAL 216
                 5799***************************************975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (248 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       126  (0.0307167); expected 82.0 (0.02)
Passed bias filter:                       99  (0.0241346); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.16u 0.24s 00:00:00.40 Elapsed: 00:00:00.35
# Mc/sec: 935.24
//
Query:       MMETSP1137-20121227|2215_1  [L=196]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.019   12.8   0.1      0.039   11.8   0.1    1.5  1  TIGR03493 cellullose_BcsF: celllulose biosynthesis operon protein BcsF/YhjT


Domain annotation for each model (and alignments):
>> TIGR03493  cellullose_BcsF: celllulose biosynthesis operon protein BcsF/YhjT
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.1   9.4e-06     0.039       5      38 ..     146     179 ..     142     184 .. 0.85

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 9.4e-06
   TIGR03493   5 divqlvllcAliffpLgyLarrvlrrirdtlrlr 38 
                  +v l + cA i + +gy+ +r  +r++   r+ 
  MMETSP1137-20121227|2215_1 146 ALVGLGVACAFIVLCIGYMCVRFRPRLQAKRRRG 179
                 56777789*******************9887775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (196 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       195  (0.0475378); expected 82.0 (0.02)
Passed bias filter:                      105  (0.0255973); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.11u 0.19s 00:00:00.30 Elapsed: 00:00:00.64
# Mc/sec: 404.22
//
Query:       MMETSP1137-20121227|2216_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        31  (0.00755729); expected 82.0 (0.02)
Passed bias filter:                       28  (0.00682594); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.06u 0.19s 00:00:00.25 Elapsed: 00:00:00.28
# Mc/sec: 236.67
//
Query:       MMETSP1137-20121227|2217_1  [L=342]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (342 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        77  (0.0187713); expected 82.0 (0.02)
Passed bias filter:                       41  (0.00999512); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.15s 00:00:00.39 Elapsed: 00:00:00.55
# Mc/sec: 820.73
//
Query:       MMETSP1137-20121227|2218_1  [L=268]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (268 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       121  (0.0294978); expected 82.0 (0.02)
Passed bias filter:                      102  (0.0248659); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.14s 00:00:00.37 Elapsed: 00:00:00.38
# Mc/sec: 930.87
//
Query:       MMETSP1137-20121227|2219_1  [L=84]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      0.002   14.7   1.1     0.0023   14.5   0.8    1.0  1  TIGR02868 CydC: thiol reductant ABC exporter, CydC subunit


Domain annotation for each model (and alignments):
>> TIGR02868  CydC: thiol reductant ABC exporter, CydC subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.8   5.5e-07    0.0023     182     245 ..       6      69 ..       4      79 .. 0.91

  Alignments for each domain:
  == domain 1    score: 14.5 bits;  conditional E-value: 5.5e-07
   TIGR02868 182 eqalarlrselaaqlldllegaaelvvaGaleavlaqveeaereltraekraaaaealgaaltl 245
                 e+ l ++r++++++  + l+g + l ++G+++a+ +++ +a+r+++ ++  +a+++al+a  ++
  MMETSP1137-20121227|2219_1   6 EALLPAQRASMTSAYERHLHGDPVLAASGRSHAAARSAVAASRAIVMVASTSATTSALAACQKI 69 
                 5667789***************************************************987655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (84 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       148  (0.03608); expected 82.0 (0.02)
Passed bias filter:                      104  (0.0253535); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.39
# Mc/sec: 284.28
//
Query:       MMETSP1137-20121227|2220_1  [L=203]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (203 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       124  (0.0302292); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.13s 00:00:00.33 Elapsed: 00:00:00.45
# Mc/sec: 595.42
//
Query:       MMETSP1137-20121227|2221_1  [L=424]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.5e-08   32.0   0.0    0.00012   19.1   0.0    3.5  4  TIGR03547 muta_rot_YjhT: mutatrotase, YjhT family
    1.4e-05   22.2   0.0    0.00014   18.9   0.0    2.1  3  TIGR03548 mutarot_permut: cyclically-permuted mutatrotase family protein


Domain annotation for each model (and alignments):
>> TIGR03547  muta_rot_YjhT: mutatrotase, YjhT family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.0     6e-08   0.00012      84     143 ..      18      79 ..       5      87 .. 0.87
   2 ?    0.4   0.0      0.03        61      82     105 ..     121     144 ..      81     173 .. 0.59
   3 !    6.8   0.0   0.00033      0.67      94     146 ..     235     289 ..     210     301 .. 0.80
   4 !    7.0   0.0    0.0003      0.62     104     147 ..     247     290 ..     235     360 .. 0.57

  Alignments for each domain:
  == domain 1    score: 19.1 bits;  conditional E-value: 6e-08
   TIGR03547  84 lddvykydpkknsWeklet..rsPvgllGasaveleegkililGGvnkeiFdkyladisaad 143
                  +d y++d  + +W+k+++  ++P    G++a+ +++g+++++GG++ + F + ++++s+++
  MMETSP1137-20121227|2221_1  18 TNDLYVFDLVRSEWSKVKAqgTPPAKRYGHTATVTSDGRMIVVGGFDGKHFLNDVHELSHVN 79 
                 5899***********997622689************************99988888888776 PP

  == domain 2    score: 0.4 bits;  conditional E-value: 0.03
   TIGR03547  82 qvlddvykydpkknsWekletrsP 105
                 + lddv++ d ++ +W++l+ ++ 
  MMETSP1137-20121227|2221_1 121 RQLDDVHSLDLQSFEWRQLHCEQA 144
                 446777777777777777765543 PP

  == domain 3    score: 6.8 bits;  conditional E-value: 0.00033
   TIGR03547  94 knsWeklet..rsPvgllGasaveleegkililGGvnkeiFdkyladisaadkdk 146
                 +  We++e+   sP  l+G+  +  + g++ ++GG+ +  F + l+ +s  d d 
  MMETSP1137-20121227|2221_1 235 QVVWERVEAvgASPPPLSGHALAADSRGRVWLFGGYAHGAFKNDLHVLSPRDADA 289
                 56799998633699*********9*****************99888777666665 PP

  == domain 4    score: 7.0 bits;  conditional E-value: 0.0003
   TIGR03547 104 sPvgllGasaveleegkililGGvnkeiFdkyladisaadkdke 147
                 sP  l+G+  +  + g++ ++GG+ +  F + l+ +s  d d +
  MMETSP1137-20121227|2221_1 247 SPPPLSGHALAADSRGRVWLFGGYAHGAFKNDLHVLSPRDADAR 290
                 55556666655555566666666666555555444444433333 PP

>> TIGR03548  mutarot_permut: cyclically-permuted mutatrotase family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.0     7e-08   0.00014     172     246 ..       5      77 ..       2      86 .. 0.90
   2 ?   -0.2   0.0     0.044        90     217     242 ..     102     127 ..      76     145 .. 0.72
   3 ?   -2.9   0.0       0.3   6.1e+02     198     233 ..     297     330 ..     257     334 .. 0.69

  Alignments for each domain:
  == domain 1    score: 18.9 bits;  conditional E-value: 7e-08
   TIGR03548 172 nelYvfgggdaeaytdgyayslkknkWekvaavlsdeepisllGaasvklneskllviGGvnkkvfedAvkrleq 246
                 +e+ +fgg+      d y ++l + +W kv+a   +  p    G ++   ++  ++v+GG++ k f + v++l++
  MMETSP1137-20121227|2221_1   5 GEVLMFGGNMYDPTNDLYVFDLVRSEWSKVKA--QGTPPAKRYGHTATVTSDGRMIVVGGFDGKHFLNDVHELSH 77 
                 56778999999999*****************9..777888999***********************999998876 PP

  == domain 2    score: -0.2 bits;  conditional E-value: 0.044
   TIGR03548 217 asvklneskllviGGvnkkvfedAvk 242
                 a+++ ++ +ll++GG++  +  d v+
  MMETSP1137-20121227|2221_1 102 ATLAEGNRTLLIVGGFDGMRQLDDVH 127
                 45666778899999998776666555 PP

  == domain 3    score: -2.9 bits;  conditional E-value: 0.3
   TIGR03548 198 WekvaavlsdeepisllGaasvklneskllviGGvn 233
                 W++v+   s++ p+     + v+ n+  ll++GG +
  MMETSP1137-20121227|2221_1 297 WQSVRP--SGKAPSPRHKHTMVAGNDGRLLLFGGHD 330
                 444444..4444444444556777788888888866 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (424 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       110  (0.0268162); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.35u 0.13s 00:00:00.48 Elapsed: 00:00:00.48
# Mc/sec: 1165.90
//
Query:       MMETSP1137-20121227|2224_1  [L=432]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (432 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        64  (0.0156021); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.17s 00:00:00.45 Elapsed: 00:00:00.39
# Mc/sec: 1462.03
//
Query:       MMETSP1137-20121227|2225_1  [L=399]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (399 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.14s 00:00:00.42 Elapsed: 00:00:00.42
# Mc/sec: 1253.90
//
Query:       MMETSP1137-20121227|2226_1  [L=237]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.13   10.6   5.5       0.25    9.6   0.6    2.2  2  TIGR02473 flagell_FliJ: flagellar export protein FliJ


Domain annotation for each model (and alignments):
>> TIGR02473  flagell_FliJ: flagellar export protein FliJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.6     6e-05      0.25      11      80 ..     117     186 ..     114     197 .. 0.88
   2 ?    2.9   0.5    0.0069        28      33      65 ..     199     221 ..     182     228 .. 0.63

  Alignments for each domain:
  == domain 1    score: 9.6 bits;  conditional E-value: 6e-05
   TIGR02473  11 rekeeeqakselakaqaeferleqqLqqlekereeyeqqanekvqsgtsaaelsnlqrfirqldeaieqq 80 
                 +++e + ++ e++k+++ ++ l ++L++ ++e +++ +++  +++s t+ + l  +++ + +l+++ +q+
  MMETSP1137-20121227|2226_1 117 KQDELKVKQDEYGKQSEYINSLTNELASVSEELNAVKEKMDARGSSMTDTSPLIKIKTAVSKLRTEAKQL 186
                 5788899999*****************************9999999999888888888888888877776 PP

  == domain 2    score: 2.9 bits;  conditional E-value: 0.0069
   TIGR02473  33 eqqLqqlekereeyeqqanekvqsgtsaaelsn 65 
                 +++L+q++++r+e+  ++n          ++ +
  MMETSP1137-20121227|2226_1 199 AKKLKQNANTRQEAAVSKN----------SHLH 221
                 4555555555555555554..........4444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (237 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       202  (0.0492443); expected 82.0 (0.02)
Passed bias filter:                      105  (0.0255973); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.25u 0.18s 00:00:00.43 Elapsed: 00:00:00.28
# Mc/sec: 1078.67
//
Query:       MMETSP1137-20121227|2227_1  [L=174]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (174 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       106  (0.0258411); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.17s 00:00:00.34 Elapsed: 00:00:00.52
# Mc/sec: 441.66
//
Query:       MMETSP1137-20121227|2229_1  [L=185]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (185 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        55  (0.0134081); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.18s 00:00:00.37 Elapsed: 00:00:00.39
# Mc/sec: 626.10
//
Query:       MMETSP1137-20121227|2230_1  [L=297]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (297 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        81  (0.0197465); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.14s 00:00:00.38 Elapsed: 00:00:00.39
# Mc/sec: 1005.15
//
Query:       MMETSP1137-20121227|2231_1  [L=149]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (149 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        79  (0.0192589); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.18s 00:00:00.34 Elapsed: 00:00:00.47
# Mc/sec: 418.43
//
Query:       MMETSP1137-20121227|2232_1  [L=627]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.2e-06   25.4   9.8    1.2e-06   25.4   6.8    2.3  2  TIGR00931 antiport_nhaC: Na+/H+ antiporter NhaC


Domain annotation for each model (and alignments):
>> TIGR00931  antiport_nhaC: Na+/H+ antiporter NhaC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   1.4     0.034   1.4e+02     318     400 ..     154     233 ..      81     293 .. 0.69
   2 !   25.4   6.8   2.9e-10   1.2e-06      52     190 ..     436     575 ..     401     592 .. 0.70

  Alignments for each domain:
  == domain 1    score: -1.2 bits;  conditional E-value: 0.034
   TIGR00931 318 alslgGvlqklGvlkvivqklekkvistlsltlst.llvallvnvvtceqyvsillpgkiledayvklnldkknlsrtaedagt 400
                   +  G++qk G    + q l+++++s++s  l t +l++l    +  + y s+l+ g+ l+ +   l +++  ++  + + + 
  MMETSP1137-20121227|2232_1 154 LGGTIGLVQKAGGGLALGQLLQRFMKSAYSALLCTwSLAGL----IFFDDYSSLLIVGNSLRPVLPALRVAPERFAFVVHVMAV 233
                 22344778888877777788888888887655444034333....334778888888888887777777777666655555555 PP

  == domain 2    score: 25.4 bits;  conditional E-value: 2.9e-10
   TIGR00931  52 ykdledaivegikkglkavlilvsvGlligtWiagGtvPt..liyyGlkiisPeyllvatl.licaivsvatGtsfgtvGtvGvallgigeglgid.lalvaGavvaGayfGdklsPlsdttnlasalagvdllehirhllyt 190
                   +  +a + g+k  l++ ++l++  +l  +    G v t  ++   l++  P + l + + +++  +s a G+sfgt+  +   +  +++ lg     l   +v+ Ga+fG+  sP+sdtt l+  +++ dl +h+r +   
  MMETSP1137-20121227|2232_1 436 VSEAMEAWMAGMKDVLEPCFVLLLAWALGEV---VGLVRTadFLAGALHAGMPRWALPTLItVLAHAISYACGSSFGTMAIILPLVGPLAMKLGGGrDYLLHDSVLGGAVFGNICSPISDTTILTVLATKCDLQAHVRTITPY 575
                 3444556677888888888887765444332...2344331134445777789886544332467889**********99875333335555544303467789**********************************98633 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (627 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       140  (0.0341297); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.15s 00:00:00.57 Elapsed: 00:00:00.45
# Mc/sec: 1839.05
//
Query:       MMETSP1137-20121227|2233_1  [L=833]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-29  100.7   2.2    8.8e-27   91.4   0.0    2.3  2  TIGR02956 TMAO_torS: TMAO reductase sytem sensor TorS
    2.4e-13   47.4   1.3    3.6e-13   46.8   0.0    1.8  2  TIGR02916 PEP_his_kin: putative PEP-CTERM system histidine kinase
    5.6e-12   43.1   0.0    4.4e-11   40.2   0.0    2.0  2  TIGR02966 phoR_proteo: phosphate regulon sensor kinase PhoR
    9.3e-10   35.9   1.7    1.4e-09   35.3   0.0    2.1  3  TIGR01386 cztS_silS_copS: heavy metal sensor kinase
    1.3e-09   35.0   0.3    2.4e-09   34.0   0.0    1.5  2  TIGR02938 nifL_nitrog: nitrogen fixation negative regulator NifL
    1.4e-06   24.7   0.0    2.9e-06   23.7   0.0    1.5  1  TIGR03785 marine_sort_HK: proteobacterial dedicated sortase system histidine kinase
      0.007   13.5   0.0      0.016   12.4   0.0    1.6  2  TIGR02154 PhoB: phosphate regulon transcriptional regulatory protein PhoB
  ------ inclusion threshold ------
      0.028   11.9   0.0       0.11    9.9   0.0    1.9  2  TIGR01387 cztR_silR_copR: heavy metal response regulator


Domain annotation for each model (and alignments):
>> TIGR02956  TMAO_torS: TMAO reductase sytem sensor TorS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.5   1.7   0.00078       0.4     420     480 ..     231     288 ..     219     313 .. 0.83
   2 !   91.4   0.0   1.7e-29   8.8e-27     528     692 ..     360     526 ..     353     538 .. 0.90

  Alignments for each domain:
  == domain 1    score: 6.5 bits;  conditional E-value: 0.00078
   TIGR02956 420 ehkesLeelvaqrTqeLketnerLneEvlnHakAraeAeeAnrAKSaFLAtmSHEiRTPln 480
                 eh    ++l + + qe  +t + +  E  +H+  r++Aee  + + ++L ++ H+  TP+ 
  MMETSP1137-20121227|2233_1 231 EHM---AQLERAHRQEVLATEHAIRCEHRAHEAERQNAEERLQQRNKYLGAICHDFGTPVS 288
                 444...455556778999999**************************************85 PP

  == domain 2    score: 91.4 bits;  conditional E-value: 1.7e-29
   TIGR02956 528 GhlsiserafdlskLledvlhlmesraqekgiqLsleidedlpevlqgDlsrirQvliNlvgNaiKFTdrGsvvlrvslndds.llfeVeDtGvGiaeeeqetlFkaftqae.grkksgGTGLGLAiskrlveamdgelsveSelgkGScFafelplergkkaeksa 692
                 G l   +++f++ +L+ +   + +   ++  ++ ++++d d+p+v+q+D + +  +l+N+ +N++K T +Gsv+++    ++s l+feV DtG G++ e   +lF++f  a     ++  TGLGL  sk+l+e+++g ++   + + G +F  e+p++   +a+ ++
  MMETSP1137-20121227|2233_1 360 GTLVPDRKPFEMAELMRKSASIARDTGKSDRVTVQTHTDADIPHVVQTDANWLFMILVNFASNSMKHTRQGSVTISAIRVGESlLRFEVSDTGSGVPAEFVPSLFQPFCSAStAATSVESTGLGLYHSKQLAEILGGSVGYRANADGGATFYVEVPIQPVTAARAKE 526
                 37778899*******************************************************************865555555***************************98889999*************************************98776665554 PP

>> TIGR02916  PEP_his_kin: putative PEP-CTERM system histidine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.7      0.48   2.4e+02      69     182 ..     108     219 ..      60     229 .. 0.66
   2 !   46.8   0.0   7.1e-16   3.6e-13     543     679 .]     369     515 ..     361     515 .. 0.78

  Alignments for each domain:
  == domain 1    score: -2.2 bits;  conditional E-value: 0.48
   TIGR02916  69 wlaflltllrrtltsakeklqklkllqalaallvllllvleaalvlpdlateellvalvsanllllgllllavigLvlvEqlyrsvseeerWaikflclg.laalfvfdfylyad 182
                 +la+ + ++r t++s +   ++++ l+      +l++l++ a+ ++  + + + l   + an+ +++ l++ +  L+   +l   ++ ++ +  + + +g +  ++vf + l+a+
  MMETSP1137-20121227|2233_1 108 YLALAIPVIRLTVDSFTVSENSFEPLEICLREYGLGILCPVAMSIVFSTLPVR-LSFVIIANICYAARLATTINKLMIANNLN--AAGDSIYVAWDIHVGsMLPVYVFAISLFAN 219
                 45666666777777777777777777777777777777777555555555555.44456678888888888888888877774..444555555555554245677888888876 PP

  == domain 2    score: 46.8 bits;  conditional E-value: 7.1e-16
   TIGR02916 543 vdlvdllerv..ieskraqkprievsvdkd....levradrerlervlghLvqNAleATeeeGkVkirverek.eaavieieDsGqGmseeFirerLFkPFdttKk.....aGmGiGvyesreyveelGGeieveStpgkGtiftlvlP 679
                 +++++l+++   i++ + +  r+ v+ ++d      v++d + l  +l++ + N +  T+ +G+V+i++ r + + ++ e++D+G+G++ eF+   LF+PF ++ +        G+G+y s+++ e lGG++  ++++  G++f + +P
  MMETSP1137-20121227|2233_1 369 FEMAELMRKSasIARDTGKSDRVTVQTHTDadipHVVQTDANWLFMILVNFASNSMKHTR-QGSVTISAIRVGeSLLRFEVSDTGSGVPAEFV-PSLFQPFCSASTaatsvESTGLGLYHSKQLAEILGGSVGYRANADGGATFYVEVP 515
                 556666665411334444555666666444334467899******************996.6******999996889***************6.68*****8765521112468******************************99887 PP

>> TIGR02966  phoR_proteo: phosphate regulon sensor kinase PhoR
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.0      0.11        56     111     133 ..     269     291 ..     193     310 .. 0.87
   2 !   40.2   0.0   8.7e-14   4.4e-11     185     330 ..     365     511 ..     360     514 .. 0.83

  Alignments for each domain:
  == domain 1    score: 0.4 bits;  conditional E-value: 0.11
   TIGR02966 111 eqmRrdFvanvsHELrtPLtvlk 133
                  q R++++  + H+  tP++vl+
  MMETSP1137-20121227|2233_1 269 LQQRNKYLGAICHDFGTPVSVLQ 291
                 46799***************997 PP

  == domain 2    score: 40.2 bits;  conditional E-value: 8.7e-14
   TIGR02966 185 eeekvdvaelleelkkeaealseekehqielevdaav..kvkgdeeeLrsalsNLveNAikytpeggeitvrweeeeeg.aelsvkDtGeGIaaehlprltERFYRvdksrsretgGtGLGLaIvkHvlerheaeLeieSelgkGstFs 330
                 +++++++ael+++ ++ a+ + ++ ++++++++da++   v+ d + L  +l N+ +N +k+t++g ++t+++ +  e+  +++v+DtG G++ae +p l+  F   +++ + +   tGLGL   k   e   +++  + +   G+tF 
  MMETSP1137-20121227|2233_1 365 DRKPFEMAELMRKSASIARDTGKSDRVTVQTHTDADIphVVQTDANWLFMILVNFASNSMKHTRQG-SVTISAIRVGESlLRFEVSDTGSGVPAEFVPSLFQPFCSASTAAT-SVESTGLGLYHSKQLAEILGGSVGYRANADGGATFY 511
                 568899*******99999999998889998888665422799*********************875.78999888887779***********************99988765.56679***9888887777777777777777777776 PP

>> TIGR01386  cztS_silS_copS: heavy metal sensor kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.1      0.57   2.9e+02     235     272 ..     266     305 ..     213     322 .. 0.70
   2 !   35.3   0.0   2.7e-12   1.4e-09     345     457 .]     403     515 ..     356     515 .. 0.80
   3 ?   -4.1   0.1       2.4   1.2e+03       9      27 ..     683     701 ..     640     716 .. 0.54

  Alignments for each domain:
  == domain 1    score: -2.0 bits;  conditional E-value: 0.57
   TIGR01386 235 edafqrlsqFsadlAHelRtPltnL.ltqt.qvaLsreRs 272
                 e+  q+ +++   + H+  tP++ L ++q+ +  L+reR+
  MMETSP1137-20121227|2233_1 266 EERLQQRNKYLGAICHDFGTPVSVLqIAQAgDEGLRRERQ 305
                 5556666666677778888887776333321445666664 PP

  == domain 2    score: 35.3 bits;  conditional E-value: 2.7e-12
   TIGR01386 345 aevegdaqlfrRalsNLlsNAlrytpegstievrverradevevsventgkgipeeelsrlFdRFYRvdaarsnseegtGLGLaIvrsiveaHgGeveaes.adgktrfklkfp 457
                  +v+ da+ +   l N  sN +++t +gs +   ++  ++ ++ +v++tg+g+p+e  + lF  F  +  a +   e+tGLGL   + ++e+ gG+v   + adg  +f +++p
  MMETSP1137-20121227|2233_1 403 HVVQTDANWLFMILVNFASNSMKHTRQGSVTISAIRVGESLLRFEVSDTGSGVPAEFVPSLFQPFCSASTAATSV-ESTGLGLYHSKQLAEILGGSVGYRAnADGGATFYVEVP 515
                 3678999999999****************988888888889************************9988887655.56**********************999******99987 PP

  == domain 3    score: -4.1 bits;  conditional E-value: 2.4
   TIGR01386   9 allfaavtalvlallglil 27 
                 a+++  +t+lv+++ +++ 
  MMETSP1137-20121227|2233_1 683 AAIVVSSTVLVITVNTAAT 701
                 2233333333333333333 PP

>> TIGR02938  nifL_nitrog: nitrogen fixation negative regulator NifL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.3       1.3   6.7e+02     270     320 ..     266     321 ..     259     332 .. 0.60
   2 !   34.0   0.0   4.7e-12   2.4e-09     344     493 ..     367     515 ..     360     516 .. 0.86

  Alignments for each domain:
  == domain 1    score: -3.7 bits;  conditional E-value: 1.3
   TIGR02938 270 eeklealretlsaaihrlqgPlnlisaai...svlerr.gddagndav.aallqqa 320
                 ee+l+     l a  h +  P+ ++  a+   + l r   d a  +a   a l +a
  MMETSP1137-20121227|2233_1 266 EERLQQRNKYLGAICHDFGTPVSVLQIAQagdEGLRRErQDAAEAEAAaEAELAKA 321
                 78888888888899999999999887665111345554234433333202334433 PP

  == domain 2    score: 34.0 bits;  conditional E-value: 4.7e-12
   TIGR02938 344 vpvnlnqvlrdvitllterllaaGivvdwqPaavlPavlGsesrlrslfkalvdnaieamaqkqvkrrelsist.aveddlirveiedsGPGiPadlrlkvfePffttkass..rkhvGmGlavaqeivakhaGlidvdddyreGcrivvele 493
                 +p ++ +++r+   ++ +   +  + v+    a +P v+ ++ +   lf  lv+ a ++m++   ++  ++is+ +v + l+r e+ d+G G+Pa+++   f+Pf ++ ++    +  G+Gl   +++    +G +    +  +G    ve++
  MMETSP1137-20121227|2233_1 367 KPFEMAELMRKSASIARDTGKSDRVTVQTHTDADIPHVVQTDAN--WLFMILVNFASNSMKHT--RQGSVTISAiRVGESLLRFEVSDTGSGVPAEFVPSLFQPFCSASTAAtsVESTGLGLYHSKQLAEILGGSVGYRANADGGATFYVEVP 515
                 67788999999999999999999999999999999999877665..68889**********99..778888876378999*************************9876544228899**********9999999999999999999988876 PP

>> TIGR03785  marine_sort_HK: proteobacterial dedicated sortase system histidine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.7   0.0   5.7e-09   2.9e-06     554     703 .]     365     515 ..     362     515 .. 0.89

  Alignments for each domain:
  == domain 1    score: 23.7 bits;  conditional E-value: 5.7e-09
   TIGR03785 554 ekedfdlsevlselvqgYqqlyeeqrfeleieeedl...vlrgspellaQllDKlvdNaieFskedglIevslkekkkealltveNeGpplPedlkeklFdsmvSvRaqkaqeqpHLGlGLyIvrliadfHqgeikaeNraqedgvvfevslp 703
                 ++++f+++e++ +  +  +++ ++ r+++++++++    v++  ++ l  +l    +N++  ++++++    ++  ++    +v+  G+ +P++   +lF+++ S     a++ +  GlGLy ++ +a+  +g++  + +a+  g +f v++p
  MMETSP1137-20121227|2233_1 365 DRKPFEMAELMRKSASIARDTGKSDRVTVQTHTDADiphVVQTDANWLFMILVNFASNSMKHTRQGSVTISAIRVGESLLRFEVSDTGSGVPAEFVPSLFQPFCSAS-TAATSVESTGLGLYHSKQLAEILGGSVGYRANAD-GGATFYVEVP 515
                 6789*************************99988655779************************998866677777888899***********************98.66677779*******************9988877.7888887766 PP

>> TIGR02154  PhoB: phosphate regulon transcriptional regulatory protein PhoB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.9   0.0       2.9   1.5e+03     105     126 ..     367     388 ..     365     399 .. 0.74
   2 !   12.4   0.0   3.1e-05     0.016      90     119 ..     802     831 ..     783     833 .] 0.86

  Alignments for each domain:
  == domain 1    score: -3.9 bits;  conditional E-value: 2.9
   TIGR02154 105 kPfspkellarikavlrrirpe 126
                 kPf + el+ +  ++ r + ++
  MMETSP1137-20121227|2233_1 367 KPFEMAELMRKSASIARDTGKS 388
                 9999999998877777765544 PP

  == domain 2    score: 12.4 bits;  conditional E-value: 3.1e-05
   TIGR02154  90 drvrgletGaddyvvkPfspkellarikav 119
                  r ++l++G dd +vkPf ++ l + +++ 
  MMETSP1137-20121227|2233_1 802 GRAACLDAGMDDAIVKPFDARTLYSTLQTF 831
                 5789******************99887765 PP

>> TIGR01387  cztR_silR_copR: heavy metal response regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0      0.64   3.3e+02      99     128 ..     367     394 ..     341     434 .. 0.74
   2 ?    9.9   0.0   0.00022      0.11      49     114 ..     757     832 ..     741     833 .] 0.76

  Alignments for each domain:
  == domain 1    score: -1.4 bits;  conditional E-value: 0.64
   TIGR01387  99 kpfefaellarvrtllrrseskestvleia 128
                 kpfe+ael+ +  ++ r + + +   ++++
  MMETSP1137-20121227|2233_1 367 KPFEMAELMRKSASIARDTGKSDR--VTVQ 394
                 9******99877766665443332..3333 PP

  == domain 2    score: 9.9 bits;  conditional E-value: 0.00022
   TIGR01387  49 dvmlpgldGwevlkalresaketpvllltardevadkv..........kGlelGaddylvkpfefaellarvrtll 114
                 ++m   ld w+ +  +     e+ +l+lta + v+  v            l+ G dd +vkpf+   l + ++t l
  MMETSP1137-20121227|2233_1 757 NLMREQLDAWTGMLPIEADCGEEALLMLTAEQPVKVSVycxxxxxgraACLDAGMDDAIVKPFDARTLYSTLQTFL 832
                 56777889999999999999999999999999887544222222111167**************999988877766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (833 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       254  (0.061921); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         8  (0.00195027); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.62u 0.17s 00:00:00.79 Elapsed: 00:00:00.60
# Mc/sec: 1832.45
//
Query:       MMETSP1137-20121227|2234_1  [L=388]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (388 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.16s 00:00:00.44 Elapsed: 00:00:00.37
# Mc/sec: 1384.10
//
Query:       MMETSP1137-20121227|2235_1  [L=263]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.1e-64  215.1   2.6    7.6e-63  210.0   1.8    2.0  1  TIGR00761 argB: acetylglutamate kinase
    3.2e-34  116.4   1.4    3.4e-17   60.3   0.0    2.0  2  TIGR01890 N-Ac-Glu-synth: amino-acid N-acetyltransferase
    2.8e-08   31.0   1.0    0.00011   19.2   0.1    2.2  2  TIGR00746 arcC: carbamate kinase
    5.9e-08   30.1   2.6      1e-07   29.3   0.6    2.0  2  TIGR01027 proB: glutamate 5-kinase
    5.5e-07   26.7   1.8    0.00014   18.8   0.2    2.1  2  TIGR00656 asp_kin_monofn: aspartate kinase, monofunctional class
    2.3e-05   21.5   0.2     0.0025   14.8   0.0    2.1  2  TIGR00657 asp_kinases: aspartate kinase
    0.00041   17.6   0.1     0.0008   16.7   0.0    1.5  2  TIGR02078 AspKin_pair: putative Pyrococcus aspartate kinase subunit
     0.0006   15.9   0.2     0.0011   15.1   0.1    1.3  1  TIGR01092 P5CS: delta l-pyrroline-5-carboxylate synthetase
     0.0012   16.3   0.1      0.002   15.6   0.0    1.3  1  TIGR00338 serB: phosphoserine phosphatase SerB


Domain annotation for each model (and alignments):
>> TIGR00761  argB: acetylglutamate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  210.0   1.8   1.7e-65   7.6e-63       1     231 []      20     236 ..      20     236 .. 0.98

  Alignments for each domain:
  == domain 1    score: 210.0 bits;  conditional E-value: 1.7e-65
   TIGR00761   1 tiViKiGGaais..elleelakdiaklrkegiklvivHGGgpeinelleklgievefvnglRvTdketlevvemvligkvnkelvallekhgikavGltgkDgqlltaekldkedlgyvGeikkvnkelleallkagiipviaslaldeegqllNvnaDtaAaelAaaleAekLvlLtdvaGilegdkksliseleleeieqlikqavikgGmipKveaalealesgvkkvvi 231
                 t+V+K+GG+a+s  el + +akdia l+  g+k+v+vHGGgp+i ++lekl+i+ +fvnglRvTd++t++v+emvl+g++nk               +tg D +l+ a++ d e lg+vGe   v ++ l+all+ g+ipvia++a+ e+gq++N+naDt+A+++A al A+ L+lLtdv+G+l+  + +l+ +l+l++ + li+ + + gGmipK+++a++a+e gv ++vi
  MMETSP1137-20121227|2235_1  20 TVVVKYGGHAMSndELADGFAKDIALLQGLGMKPVVVHGGGPQIGKMLEKLEIPSNFVNGLRVTDAATMQVAEMVLAGSINKX--------------ITGRDDNLVSATQKDPE-LGLVGEPGLVRADRLQALLDTGVIPVIAPIAAGEDGQAFNLNADTMAGAVAGALRAHTLLLLTDVKGVLNS-AGELLPNLSLAQSNGLIEDGTASGGMIPKLQNAMQAVEAGVGSAVI 236
                 69**********9999**************************************************************99987..............68**************9.***********************************************************************.777***************************************9997 PP

>> TIGR01890  N-Ac-Glu-synth: amino-acid N-acetyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.3   0.0   7.4e-20   3.4e-17      12     114 ..      13     117 ..       5     125 .. 0.88
   2 !   55.5   0.2   2.2e-18     1e-15     150     279 ..     131     261 ..     123     263 .] 0.93

  Alignments for each domain:
  == domain 1    score: 60.3 bits;  conditional E-value: 7.4e-20
   TIGR01890  12 inahrdktlvvglggelvedknlgk.lvadiallhslGvrlvlvhGarpqieerlakrgrtthyvrGlrvtdeaslelv.keaaGelrlaiearlsmslantpma 114
                 + + ++ t+vv  gg+++ +++l++ +++diall+ lG++ v+vhG  pqi + l+k ++ +++v+Glrvtd+a+++++ +  aG++++ i+ r  + +++t + 
  MMETSP1137-20121227|2235_1  13 VSKLKGETVVVKYGGHAMSNDELADgFAKDIALLQGLGMKPVVVHGGGPQIGKMLEKLEIPSNFVNGLRVTDAATMQVAeMVLAGSINKXITGRDDNLVSATQKD 117
                 67889**************99997549**************************************************9834579*****9999877777776655 PP

  == domain 2    score: 55.5 bits;  conditional E-value: 2.2e-18
   TIGR01890 150 aegirrlldersivllsPlgfsvtGeifnlamedvatsvaiklkadklillteedGildadGklvaelsaqeveslverleeet.tarllsaavkalrgGvarshlvsyaedGallqelftrdGiGtlvsk 279
                 a+ ++ lld++ i +++P++    G++fnl+++ +a  va +l+a  l+llt ++G+l++ G+l  +ls  + + l+e           l++a++a+++Gv  + +++++   + l  +f    +Gt ++ 
  MMETSP1137-20121227|2235_1 131 ADRLQALLDTGVIPVIAPIAAGEDGQAFNLNADTMAGAVAGALRAHTLLLLTDVKGVLNSAGELLPNLSLAQSNGLIEDGTASGgMIPKLQNAMQAVEAGVGSAVIMDGRVPHCTLIHFFGEAAVGTAIAA 261
                 567999***********************************************************************975544326789***************************************985 PP

>> TIGR00746  arcC: carbamate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.8   0.1   8.8e-05      0.04      32      78 ..      40      85 ..      19     114 .. 0.69
   2 !   19.2   0.1   2.4e-07   0.00011     190     290 ..     141     237 ..     127     260 .. 0.80

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 8.8e-05
   TIGR00746 32 akqlvklakrgyelvithGngPqvGalllqneaadsvpakPldvlga 78
                ak+++ l   g + v++hG gPq+G++l ++ +  s+    l v  a
  MMETSP1137-20121227|2235_1 40 AKDIALLQGLGMKPVVVHGGGPQIGKML-EKLEIPSNFVNGLRVTDA 85
                677888888999*************985.555555555555555555 PP

  == domain 2    score: 19.2 bits;  conditional E-value: 2.4e-07
   TIGR00746 190 GGvPvvkdgke.lkGveaviDkDlasekLaeevnaDilviltdvdavyvnygkpdekkleevkveeleelakdgefaaGsmgPkveaaiefvesrgkkaiit 290
                 G +Pv+   +    G +  ++ D  +  +a  + a +l++ltdv+ v    g    + l +++++  + l++dg  a+G m Pk++ a++ ve++  +a+i 
  MMETSP1137-20121227|2235_1 141 GVIPVIAPIAAgEDGQAFNLNADTMAGAVAGALRAHTLLLLTDVKGVLNSAG----ELLPNLSLAQSNGLIEDG-TASGGMIPKLQNAMQAVEAGVGSAVIM 237
                 556665543321346666788999999********************97654....6899***********655.799****************99999996 PP

>> TIGR01027  proB: glutamate 5-kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.0      0.21        96       2      58 ..      20      72 ..      19      87 .. 0.75
   2 !   29.3   0.6   2.2e-10     1e-07     117     253 ..     134     261 ..     130     263 .] 0.80

  Alignments for each domain:
  == domain 1    score: -0.2 bits;  conditional E-value: 0.21
   TIGR01027  2 riVvKlGsssLteesgklkrsklaelveqvaklkkaGhevvivsSGavaaG..leaLgl 58
                ++VvK G  ++++++          +++++a l+  G + v+v  G+   G  le+L +
  MMETSP1137-20121227|2235_1 20 TVVVKYGGHAMSNDEL------ADGFAKDIALLQGLGMKPVVVHGGGPQIGkmLEKLEI 72
                6888888888877765......5567888999999999999999998776633455555 PP

  == domain 2    score: 29.3 bits;  conditional E-value: 2.2e-10
   TIGR01027 117 leellelgvvpivNENDtvaveeikfGDNDtLsalvaalveAdlLvlltdvdgLydadprtnpdAklieeveeieeelkavagssgssvGTGGmrtKleaaelAsragve.viiasgekp.ekiadlledaavgtlfea 253
                 l++ll++gv+p++    +    +      Dt++  va  + A +L+lltdv+g+ ++        +l+++++ ++++     g++      GGm  Kl+ a  A +agv  ++i+ g+ p  ++ ++  +aavgt ++a
  MMETSP1137-20121227|2235_1 134 LQALLDTGVIPVIAPIAAGEDGQAFNLNADTMAGAVAGALRAHTLLLLTDVKGVLNSAG------ELLPNLSLAQSNGLIEDGTA-----SGGMIPKLQNAMQAVEAGVGsAVIMDGRVPhCTLIHFFGEAAVGTAIAA 261
                 88999999999998654444333333356**************************9999......88888887777666666665.....69*****************62678888887557899999999**99876 PP

>> TIGR00656  asp_kin_monofn: aspartate kinase, monofunctional class
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.4   0.0   0.00089       0.4       2      40 ..      19      57 ..      18      97 .. 0.87
   2 !   18.8   0.2   3.2e-07   0.00014     126     187 ..     132     189 ..     106     197 .. 0.87

  Alignments for each domain:
  == domain 1    score: 7.4 bits;  conditional E-value: 0.00089
   TIGR00656  2 eliVqKFGGtsvgsserikkaakivlkelkegkkvvVVv 40
                e++V+K+GG ++ ++e     ak +      g k+vVV 
  MMETSP1137-20121227|2235_1 19 ETVVVKYGGHAMSNDELADGFAKDIALLQGLGMKPVVVH 57
                689**********************99999******995 PP

  == domain 2    score: 18.8 bits;  conditional E-value: 3.2e-07
   TIGR00656 126 erLlelLeegiivvvaGFiGateeGeiTtLGRGGSDltAallaaalkAdrveiyTDVeGvyt 187
                  rL  lL+ g+i+v+a  i a e+G+   L     D+ A ++a al A++  + TDV+Gv+ 
  MMETSP1137-20121227|2235_1 132 DRLQALLDTGVIPVIAP-IAAGEDGQAFNLN---ADTMAGAVAGALRAHTLLLLTDVKGVLN 189
                 79*************97.678999**99995...8*************************86 PP

>> TIGR00657  asp_kinases: aspartate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.0   0.0    0.0051       2.3       2      39 ..      19      56 ..      18      71 .. 0.92
   2 !   14.8   0.0   5.4e-06    0.0025     157     220 ..     129     188 ..     108     197 .. 0.87

  Alignments for each domain:
  == domain 1    score: 5.0 bits;  conditional E-value: 0.0051
   TIGR00657  2 aliVqKFGGtSvgnverikkvakivkkekekgnqvvVV 39
                +++V+K+GG  + n e  +  ak +   +  g ++vVV
  MMETSP1137-20121227|2235_1 19 ETVVVKYGGHAMSNDELADGFAKDIALLQGLGMKPVVV 56
                579***********************999999999999 PP

  == domain 2    score: 14.8 bits;  conditional E-value: 5.4e-06
   TIGR00657 157 ikterleklleegiivvvaGFiGatekgeittLGRGGSDltAallAaalkAdeveiytDVdGiy 220
                 ++++rl++ll+ g+i+v+a   +a e+g+   L     D+ A ++A al+A+ + + tDV+G++
  MMETSP1137-20121227|2235_1 129 VRADRLQALLDTGVIPVIAPI-AAGEDGQAFNL---NADTMAGAVAGALRAHTLLLLTDVKGVL 188
                 5678999999******99985.55566666666...69************************97 PP

>> TIGR02078  AspKin_pair: putative Pyrococcus aspartate kinase subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       1.6   7.3e+02       2      14 ..      21      33 ..      20      44 .. 0.84
   2 !   16.7   0.0   1.7e-06    0.0008     146     219 ..     130     200 ..     122     237 .. 0.92

  Alignments for each domain:
  == domain 1    score: -2.9 bits;  conditional E-value: 1.6
   TIGR02078  2 ivvkfGGssvryd 14
                +vvk+GG ++ +d
  MMETSP1137-20121227|2235_1 21 VVVKYGGHAMSND 33
                89*****988765 PP

  == domain 2    score: 16.7 bits;  conditional E-value: 1.7e-06
   TIGR02078 146 kakilyevlesGviPvipGfvgnlnGyrvtlGrGGsdysavalavllnsklvlimsdveGiftadPklvPsarl 219
                 +a++l  +l+ GviPvi+   ++ +G    l    +d  a a+a  l +++ l+++dv G+  +   l+P   l
  MMETSP1137-20121227|2235_1 130 RADRLQALLDTGVIPVIAPIAAGEDGQAFNLN---ADTMAGAVAGALRAHTLLLLTDVKGVLNSAGELLPNLSL 200
                 6789999*******************999995...899*************************99999998665 PP

>> TIGR01092  P5CS: delta l-pyrroline-5-carboxylate synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.1   2.3e-06    0.0011     135     272 ..     135     258 ..     130     262 .. 0.81

  Alignments for each domain:
  == domain 1    score: 15.1 bits;  conditional E-value: 2.3e-06
   TIGR01092 135 kellrlkvvpvlnendavstrkapyedssGivkdndslaallalelkadllillsdveGlydgppsdddsklidifvkekhqdeitfGeksrlGrGGmeakvkaavyaaygGv.sviiasGkaaen.itkvveGkkvGtl 272
                 ++ll+  v+pv+       ++ a  ed +    + d++a  +a  l+a  l+ll+dv+G+ ++        l+      + ++ i  G+ s    GGm  k++ a+ a+ +Gv s +i +G+ ++  +++      vGt 
  MMETSP1137-20121227|2235_1 135 QALLDTGVIPVI-------APIAAGEDGQAFNLNADTMAGAVAGALRAHTLLLLTDVKGVLNSA-----GELLPNLSLAQSNGLIEDGTAS----GGMIPKLQNAMQAVEAGVgSAVIMDGRVPHCtLIHFFGEAAVGTA 258
                 556666666654.......466778999999999**************************9975.....5677777778888899999876....9****************9668999999998756777777777775 PP

>> TIGR00338  serB: phosphoserine phosphatase SerB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   4.5e-06     0.002      65     138 ..      12      86 ..       3     105 .. 0.86

  Alignments for each domain:
  == domain 1    score: 15.6 bits;  conditional E-value: 4.5e-06
   TIGR00338  65 Rvkllkglpve..llkkveeklelteGveelvkkLkekgykvaviSGgFdlvaeklkekLgldavfaNrLevedgk 138
                 Rv++lkg  v      ++ ++ el +G  + +  L+  g+k +v+ Gg  ++  k+ ekL+++  f N L+v+d +
  MMETSP1137-20121227|2235_1  12 RVSKLKGETVVvkYGGHAMSNDELADGFAKDIALLQGLGMKPVVVHGGGPQIG-KMLEKLEIPSNFVNGLRVTDAA 86 
                 9*****9887642567999*****************************99885.5669**************9864 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (263 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       127  (0.0309605); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         9  (0.00219405); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.31u 0.17s 00:00:00.48 Elapsed: 00:00:00.45
# Mc/sec: 771.40
//
Query:       MMETSP1137-20121227|2236_1  [L=395]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (395 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        94  (0.0229157); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.16s 00:00:00.44 Elapsed: 00:00:00.48
# Mc/sec: 1086.16
//
Query:       MMETSP1137-20121227|2237_1  [L=73]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.011   12.7   0.0      0.013   12.5   0.0    1.0  1  TIGR00601 rad23: UV excision repair protein Rad23


Domain annotation for each model (and alignments):
>> TIGR00601  rad23: UV excision repair protein Rad23
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   3.2e-06     0.013      11      67 ..      12      65 ..       5      68 .. 0.81

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 3.2e-06
   TIGR00601 11 qkfkidlepdetvkelKekiesekgkdayevaqqkLiyaGkiLsDdktvkeykikek 67
                +k++++ +pd+tv  lK+ ++++ g      ++ ++     + +D  t+++y+i+++
  MMETSP1137-20121227|2237_1 12 KKIRVKCNPDDTVGDLKKLLAAQTG---TRPEKLRIQKWYTVYKDHITLEDYEIHDG 65
                688999*******************...33333344344469************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (73 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        77  (0.0187713); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.11u 0.19s 00:00:00.30 Elapsed: 00:00:00.47
# Mc/sec: 205.00
//
Query:       MMETSP1137-20121227|2238_1  [L=231]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (231 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        68  (0.0165773); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.14s 00:00:00.37 Elapsed: 00:00:00.34
# Mc/sec: 896.75
//
Query:       MMETSP1137-20121227|2239_1  [L=96]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (96 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        55  (0.0134081); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.12s 00:00:00.26 Elapsed: 00:00:00.26
# Mc/sec: 487.34
//
Query:       MMETSP1137-20121227|2241_1  [L=597]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   1.3e-243  806.8   1.6   1.5e-243  806.6   1.1    1.0  1  TIGR02345 chap_CCT_eta: T-complex protein 1, eta subunit
   4.5e-138  459.1   1.4   5.4e-138  458.8   1.0    1.0  1  TIGR02339 thermosome_arch: thermosome, various subunits, archaeal
   3.2e-121  403.2   1.2   4.2e-121  402.8   0.8    1.0  1  TIGR02344 chap_CCT_gamma: T-complex protein 1, gamma subunit
     1e-120  401.8   1.0   1.3e-120  401.5   0.7    1.0  1  TIGR02340 chap_CCT_alpha: T-complex protein 1, alpha subunit
   6.5e-111  369.2   1.1   8.6e-111  368.8   0.7    1.0  1  TIGR02342 chap_CCT_delta: T-complex protein 1, delta subunit
     2e-103  344.6   4.1   2.4e-103  344.3   2.8    1.0  1  TIGR02341 chap_CCT_beta: T-complex protein 1, beta subunit
   3.4e-101  337.3   1.5   4.3e-101  337.0   1.1    1.0  1  TIGR02343 chap_CCT_epsi: T-complex protein 1, epsilon subunit
      6e-88  293.4   0.1    7.3e-88  293.1   0.1    1.0  1  TIGR02346 chap_CCT_theta: T-complex protein 1, theta subunit
    8.4e-84  279.8   0.7    1.1e-83  279.4   0.5    1.1  1  TIGR02347 chap_CCT_zeta: T-complex protein 1, zeta subunit
    4.1e-23   79.5   2.8    1.6e-12   44.5   0.3    2.1  2  TIGR02348 GroEL: chaperonin GroL


Domain annotation for each model (and alignments):
>> TIGR02345  chap_CCT_eta: T-complex protein 1, eta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  806.6   1.1  3.7e-246  1.5e-243       1     522 [.      12     533 ..      12     534 .. 0.99

  Alignments for each domain:
  == domain 1    score: 806.6 bits;  conditional E-value: 3.7e-246
   TIGR02345   1 rptivllkegtdtsqGkgqlisninacvaiaeilkttlGPrGmdklivskek.avvsndGatilklldivhPaakllvdiaksqdsevGdGttsvvvlagellkeakplieeglhpqliiralrealklaieklkeiavelde.eksekrevleklaatalsskliaeekeffskmvvdavlsldkddldkkliGvkkvkGGaledsvlvkGvafkktfsyaGfeqqPkkfanPkilllnvelelkaekdnaeirvedvedykeivdaewkiileklekivesGanvvlsklsiGdlatqyfadrdifcaGrvsdedlkrvvkatGasilsavsdleadvlGkcalfeekqiGserynlftggekakactlilrGgaeqfleeaerslhdaimivrralkakkivaGGGaielelskllrekskkidgkqqliieavakaleviPrslaenaGfdsieilnklrkkhakkgekwaGvdieteeildaleafvwePllvkknalkaateaaatilsvdetikakk 522
                 +p+ivll+egtdtsqGk qlisninac+ai+++++ttlGPrGmdkli++++   ++sndGat++k+l+ivhPa+k+lvdi+ sqd+evGdGttsvv+lage+l+e+kp+ieeg+hpq+i++a+rea kla+ +l+e++v+ld  + ++ re+lek a t+lsskl++ +k+ff+kmvvdavl +  +  + ++iG+kkv GG+l ds+lv+GvafkktfsyaGfeq  k f nPki+llnvelelkae+dnae+rv dv  y+++vdaew+ii++kl kiv+sGa +vls+l+iGdlatqyfadr +fcaGrv ++dlkrv+katGa ++++ +dl+ad +G c+lfee+q+G er+n+f+g++ a + t+ilrGgaeqf+eeaerslhdaim  rr l + ++vaGGGaie+e+s++lre+s+ i gk+ql+i a+akaleviPr++a+naG+d +++lnklr kha+ g++w+Gvd+ ++ i d++e+fvwe +++k+nal aa+eaa++ilsvdet++++ 
  MMETSP1137-20121227|2241_1  12 QPQIVLLREGTDTSQGKPQLISNINACQAIVDVVRTTLGPRGMDKLIHDDNGrVTISNDGATLMKQLQIVHPAGKTLVDISMSQDAEVGDGTTSVVLLAGEFLRECKPYIEEGVHPQVIVKAFREACKLALGRLDELEVKLDMqTPEKLREMLEKSAGTSLSSKLVSGQKAFFAKMVVDAVLGIG-KTGNLDMIGMKKVPGGSLIDSMLVEGVAFKKTFSYAGFEQMTKYFDNPKIVLLNVELELKAERDNAEVRVADVAAYQRVVDAEWDIIYDKLAKIVASGASIVLSRLAIGDLATQYFADRGLFCAGRVAEDDLKRVAKATGAVLQTSCNDLSADIMGSCGLFEERQVGGERFNFFKGCKCADTNTIILRGGAEQFIEEAERSLHDAIMNTRRLLVNPSVVAGGGAIEMEISAFLRERSRGIYGKTQLLIAAYAKALEVIPRQVASNAGMDPTDVLNKLRMKHAH-GGTWFGVDVVENGICDTFESFVWEATVMKRNALAAASEAACLILSVDETVRNPA 533
                 589**********************************************99989****************************************************************************************9567888**********************************99.778889*************************************************************************************************************************************************************************************************************************************************************************************.***************************************************986 PP

>> TIGR02339  thermosome_arch: thermosome, various subunits, archaeal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  458.8   1.0  1.3e-140  5.4e-138       2     519 ..      15     530 ..      14     532 .. 0.97

  Alignments for each domain:
  == domain 1    score: 458.8 bits;  conditional E-value: 1.3e-140
   TIGR02339   2 vlilkegtqrtkgrdalksniaaakavaeavkstlGPrGlDkmLvdslGdvtitnDGatilkemdiehPaakllvevaktqdeevgDGtttavvlaGeLlekaedLleqdihPtviveGyrkaaekalevideiaekidve....dkellkkvaetsltskavaeeakdklaelvveavkqvvekredgkykvdldnikiekkkGgsiedtelveGivvDkevvh...egmPkrvenakialldaplevekteidaklkitspdqlkkfldqeeallkemvdkiadaGanvvicqkgiDdlaqhylakkGilavrrvkksDieklaratGakivsslkeieesdLGeaelveerkvgedklvfvegaknakavtillrGgtehvvdeleRaleDalkvvksvledgkvvaGgGavevelakrlreyaakieGreqlaveafadaleeiprilaenaGldpidalvelRakhekegnknagvdvftgeiedmlelgvieplkvkeqaiksateaatlilriDdvia 519
                 +++l+egt+ ++g+  l sni+a +a+ ++v++tlGPrG+Dk++ d  G vti nDGat++k+++i hPa k lv+++ +qd+evgDGtt++v+laGe l++ +  +e+++hP viv+ +r+a + al  +de+  k+d++     +e+l+k a tsl+sk v + +k+  a++vv+av  + ++        +ld i ++k  Ggs+ d++lveG+   k       e+m k ++n+ki+ll+++le++    +a++++ ++   ++ +d+e +++ ++  ki+++Ga +v+++  i dla +y+a++G++   rv ++D++++a+atGa   +s ++++++ +G+ +l eer+vg ++  f +g+k a + ti+lrGg+e+ ++e+eR+l+Da+   + +l +++vvaGgGa+e+e++  lre ++ i G+ ql + a+a+ale ipr +a naG+dp d+l +lR kh++ g ++ gvdv++  i d++e  v+e+  +k++a+++a+eaa lil +D+ ++
  MMETSP1137-20121227|2241_1  15 IVLLREGTDTSQGKPQLISNINACQAIVDVVRTTLGPRGMDKLIHDDNGRVTISNDGATLMKQLQIVHPAGKTLVDISMSQDAEVGDGTTSVVLLAGEFLRECKPYIEEGVHPQVIVKAFREACKLALGRLDELEVKLDMQtpekLREMLEKSAGTSLSSKLV-SGQKAFFAKMVVDAVLGIGKTG-------NLDMIGMKKVPGGSLIDSMLVEGVAFKKTFSYagfEQMTKYFDNPKIVLLNVELELKAERDNAEVRVADVAAYQRVVDAEWDIIYDKLAKIVASGASIVLSRLAIGDLATQYFADRGLFCAGRVAEDDLKRVAKATGAVLQTSCNDLSADIMGSCGLFEERQVGGERFNFFKGCKCADTNTIILRGGAEQFIEEAERSLHDAIMNTRRLLVNPSVVAGGGAIEMEISAFLRERSRGIYGKTQLLIAAYAKALEVIPRQVASNAGMDPTDVLNKLRMKHAH-GGTWFGVDVVENGICDTFESFVWEATVMKRNALAAASEAACLILSVDETVR 530
                 789**************************************************************************************************************************************9998444347899999**********.699************7665553.......799*************************9765223789*************************************************************************************************************************************************************************************************************************************************6.89*********************************************9875 PP

>> TIGR02344  chap_CCT_gamma: T-complex protein 1, gamma subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  402.8   0.8    1e-123  4.2e-121       2     520 ..      15     529 ..      14     534 .. 0.95

  Alignments for each domain:
  == domain 1    score: 402.8 bits;  conditional E-value: 1e-123
   TIGR02344   2 vlvlnqntkresGrkaqlsniqaakavadiirttlGpkamlkmlldplGgivltndGnailreidvahpaakslielsrtqdeevGdGttsviilaGellaaaepfleknihptvivraykkaledalkvleelsipvdvedeakllklvkssigt....kfvsrwsdlvvdlaldavktvkleerngrklevdikryakvekipGGeiedsavlkGvllnkdvthp...kmrrkienprivlldcpleykkgesqtnveilkeedwnrllqleeeevkklceeiiavkpdlvitekGvsdlaqhyllkanisairrvrktdnnriarvsGativnrveelkesdvGtgaGlfevkkiGdeyftflteckdpkactillrGaskdvlnevernlqdalavarnvllepklvpGGGatelavsvklkkkakklegveqlpyeavadaleviprtlvqncGvnvirtltelrakhaqeekkalGidGetGkivdmkekgiweplavklqtiktaiesavlllriddiv 520
                 +++l++ t+ ++G+   +sni+a++a+ d++rttlGp+ m k++ d  G + ++ndG ++++++++ hpa k+l+++s +qd evGdGttsv++laGe+l +++p++e+ +hp viv+a+++a + al  l+el +++d++  +kl ++++ s gt    k+vs  +   +++ +dav  + ++       ++d+   + ++k+pGG++ ds++++Gv + k    +   +m ++ +np+ivll++ le k    +++v + +   ++r+++ e + +    ++i+a+ + +v++   + dla  y++ +++    rv   d +r+a+++Ga++ + +++l   d+   +Glfe +++G e f f++ ck  ++ ti+lrG++ + ++e er l+da+  +r +l++p++v+GGGa+e+++s+ l+++++ + g +ql + a a+alevipr ++ n+G+++   l++lr kha++  +++G+d  +  i d  e  +we++++k +++ +a e+a+l+l +d+ v
  MMETSP1137-20121227|2241_1  15 IVLLREGTDTSQGKPQLISNINACQAIVDVVRTTLGPRGMDKLIHDDNGRVTISNDGATLMKQLQIVHPAGKTLVDISMSQDAEVGDGTTSVVLLAGEFLRECKPYIEEGVHPQVIVKAFREACKLALGRLDELEVKLDMQTPEKLREMLEKSAGTslssKLVSGQKAFFAKMVVDAVLGIGKTG------NLDM---IGMKKVPGGSLIDSMLVEGVAFKKTFSYAgfeQMTKYFDNPKIVLLNVELELKAERDNAEVRVADVAAYQRVVDAEWDIIYDKLAKIVASGASIVLSRLAIGDLATQYFADRGLFCAGRVAEDDLKRVAKATGAVLQTSCNDLSA-DIMGSCGLFEERQVGGERFNFFKGCKCADTNTIILRGGAEQFIEEAERSLHDAIMNTRRLLVNPSVVAGGGAIEMEISAFLRERSRGIYGKTQLLIAAYAKALEVIPRQVASNAGMDPTDVLNKLRMKHAHG-GTWFGVDVVENGICDTFESFVWEATVMKRNALAAASEAACLILSVDETV 529
                 7889999******************************************************************************************************************************************9999987766611115555566777888888888887766......3443...67789*******************998765569**************************************************************************************************************85.77779******************************************************************************************************************************9.59********************************************988 PP

>> TIGR02340  chap_CCT_alpha: T-complex protein 1, alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  401.5   0.7  3.2e-123  1.3e-120       6     531 ..      23     533 ..      18     538 .. 0.95

  Alignments for each domain:
  == domain 1    score: 401.5 bits;  conditional E-value: 3.2e-123
   TIGR02340   6 erksGedvrkqnvlavvavanivktslGPvGldkmlvddvGdvtitndGatilkklevehPaakvlvelaqlqdkevGdGttsvvilaaellkradelvkrkvhPtsvisGyrlalkeavkyike...klavsveelgkealinvaktslsskiislesdlfsnlvvdavlavkvtnekgetkyPikavnilkahGksaresllvkGyalnctvas...qqmpkrvkkakialldfnlqkaklklgvqivvedpeklekirkreadivkerikkilkaGanvvlttkGiddlalkylveagvmavrrvkkedlkriakatGatlvssladleGeetleasllGeaeevveeriaddelilikgtkkkksasiilrGandvlldemerslhdalcvvkrtleskkvvaGgGaveaalsiyleelattlgsreqlaiaefaealliiPkvlavnaakdstelvaklralhaaaqlkeekkklkflGldlsngkirdnveaGvlePavskvkslkfateaaitilriddliklkp 531
                 + ++G+     n+ a++a+ ++v+t+lGP G+dk++ dd G vti ndGat++k+l++ hPa+k lv+++  qd evGdGttsvv+la e+l++++  +++ vhP ++++ +r a+k a+  ++e   kl +++ e  +e l   a tslssk++s +  +f+++vvdavl + +t         ++ + + k +G+s  +s+lv+G a++ t +    +qm k   ++ki+ll+++l+ +  +   ++ v d +  +++ + e di+ +++ ki+++Ga +vl    i dla++y+ + g+++  rv ++dlkr+akatGa l +s  dl+      a ++G++  ++e +++ +   ++kg k +++ +iilrG  +++++e erslhda++  +r l   +vvaGgGa+e+ +s +l e ++ +  ++ql ia++a+al +iP+++a+na+ d t+++ klr  ha+           ++G+d++++ i+d++e  v e +v k   l +a eaa  il +d+ ++   
  MMETSP1137-20121227|2241_1  23 DTSQGKPQLISNINACQAIVDVVRTTLGPRGMDKLIHDDNGRVTISNDGATLMKQLQIVHPAGKTLVDISMSQDAEVGDGTTSVVLLAGEFLRECKPYIEEGVHPQVIVKAFREACKLALGRLDElevKLDMQTPEKLREMLEKSAGTSLSSKLVSGQKAFFAKMVVDAVLGIGKTG-------NLDMIGMKKVPGGSLIDSMLVEGVAFKKTFSYagfEQMTKYFDNPKIVLLNVELELKAERDNAEVRVADVAAYQRVVDAEWDIIYDKLAKIVASGASIVLSRLAIGDLATQYFADRGLFCAGRVAEDDLKRVAKATGAVLQTSCNDLS------ADIMGSCGLFEERQVGGERFNFFKGCKCADTNTIILRGGAEQFIEEAERSLHDAIMNTRRLLVNPSVVAGGGAIEMEISAFLRERSRGIYGKTQLLIAAYAKALEVIPRQVASNAGMDPTDVLNKLRMKHAH--------GGTWFGVDVVENGICDTFESFVWEATVMKRNALAAASEAACLILSVDETVRNPA 533
                 56778888889************************************************************************************************************97765533378889999999**********************************8877.......4788999*******************99865322389*****************99999999*********************************************************************************99976......5589***************************************************************************************************************************99975........4579********************************************998655 PP

>> TIGR02342  chap_CCT_delta: T-complex protein 1, delta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  368.8   0.7  2.1e-113  8.6e-111      12     514 ..      32     529 ..      23     531 .. 0.95

  Alignments for each domain:
  == domain 1    score: 368.8 bits;  conditional E-value: 2.1e-113
   TIGR02342  12 tsnivaakavadairtslGpkGmdkliqekkGeviitndGatilkqlevlhpaakllvelskaqdieaGdGttsvvvlaGalldaaekllekgihptiisesfqsaadealkilkelsipvdls....drealiksattslsskvvsqyssllaplavdavlkvidsekdknvdlkdikvvkklGgtiddtelieGvvltqkasks..aggptriekakigliqfqlsapktdmenqvvvsdyaqmdrvlkeerkyilnlvkkikkaganvlliqksilrdavndlalhflakkkilvvkdiereevefisktlGckpvasidkltadklGkaelveevksddskivkitGvknagktvsvlvrGsnklvideaerslhdalcvirslvkkraliaGGGapeieialklskkarelkGvesyivrafadalevipytlaenaGlnpikvvtelrnrhaqGektaGisvrkggitdileeevlqpllvtksavtlasetvrsilkiddiv 514
                  sni a +a+ d++rt+lGp+Gmdkli++++G v+i+ndGat++kql+++hpa k lv++s +qd e GdGttsvv+laG +l  ++  +e g+hp++i ++f++a++ al  l+el  ++d++     re+l ksa tslssk+vs    ++a + vdavl + ++      +l +i + k  Gg + d+ l+eGv +++++s +  +  ++  ++ ki l++  l       +++v v d a+  rv+  e   i +   ki ++ga ++l      r a+ dla  ++a +++++   +  ++++ ++k+ G+   +s + l+ad +G+  l ee ++++ +     G+k  + t ++++rG  +  i+eaerslhda+   r l+ + +++aGGGa e+ei+  l++++r + G +++++ a+a+alevip  +a naG++p +v+ +lr +ha+G +  G++v++ gi d+ e  v   +++++ a+  ase+   il +d+ v
  MMETSP1137-20121227|2241_1  32 ISNINACQAIVDVVRTTLGPRGMDKLIHDDNGRVTISNDGATLMKQLQIVHPAGKTLVDISMSQDAEVGDGTTSVVLLAGEFLRECKPYIEEGVHPQVIVKAFREACKLALGRLDELEVKLDMQtpekLREMLEKSAGTSLSSKLVSGQKAFFAKMVVDAVLGIGKT-----GNLDMIGMKKVPGGSLIDSMLVEGVAFKKTFSYAgfEQMTKYFDNPKIVLLNVELELKAERDNAEVRVADVAAYQRVVDAEWDIIYDKLAKIVASGASIVL-----SRLAIGDLATQYFADRGLFCAGRVAEDDLKRVAKATGAVLQTSCNDLSADIMGSCGLFEERQVGGERFNFFKGCKC-ADTNTIILRGGAEQFIEEAERSLHDAIMNTRRLLVNPSVVAGGGAIEMEISAFLRERSRGIYGKTQLLIAAYAKALEVIPRQVASNAGMDPTDVLNKLRMKHAHGGTWFGVDVVENGICDTFESFVWEATVMKRNALAAASEAACLILSVDETV 529
                 59************************************************************************************************************************98665569999*******************************886.....788999988889****************99986411233445799*********9876666667899********************************98.....4889*********************************************************************975.6899***************************************************************************************************************************************************977 PP

>> TIGR02341  chap_CCT_beta: T-complex protein 1, beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  344.3   2.8  5.8e-106  2.4e-103      13     514 ..      28     531 ..      16     536 .. 0.94

  Alignments for each domain:
  == domain 1    score: 344.3 bits;  conditional E-value: 5.8e-106
   TIGR02341  13 enarlssfvgaiavgdlvkstlgpkgmdkillsasseasivvtndgatilksialdnpaakvlvdiskvqddevgdgttsvtvlaaellreaeklvnkkihpqtiiegyrlatkaalealkksavdns.sdkvkfredllkiarttlsskilsqdkdhfaklavdavlrlkgstnleaiqiikklggklddsyldegfllekki...gvnq.pkrienakiliantaldtdkvkvfgsrvrvdstaklaelekaekekmkekvekilkhninvfinrqliynypeqlfadagvmaiehadfegverlalvtggeivstfdepelvklgscdlieeiligedkllkfsgvklgeactivlrgatqqildeaerslhdalavlsqtvkesrtvlgggcaellmakaveeeaqkvagkkalaveafakalrqlptiladnagfdsaelvaklraahaegnstagldleegeiadlrklgivesyklkravvssaaeaaevllrvdniika 514
                 +   +s +    a+ d+v++tlgp+gmdk++   +    ++++ndgat++k++ +  pa k lvdis+ qd evgdgttsv++la e+lre +  +++ +hpq+i++ +r+a k al  l +  v+   + + k+re l+k a t+lssk++s +k  fak+ vdavl +  ++nl+ i + k+ gg+l ds l eg  ++k++   g  q  k  +n ki++ n  l+  k     + vrv  +a   ++  ae + + +k++ki + +  + + r  i +   q fad g+ +      + ++r+a  tg  + ++ ++ +   +gsc l ee  +g +++  f g+k  ++ ti+lrg ++q ++eaerslhda+    +   +  +v+ggg+ e+ ++  + e ++ + gk  l + a+akal+ +p  +a nag+d ++++ klr +ha+g +  g+d+ e  i+d  +  + e+  +kr  +++a+eaa ++l vd+ ++ 
  MMETSP1137-20121227|2241_1  28 KPQLISNINACQAIVDVVRTTLGPRGMDKLIHDDNG--RVTISNDGATLMKQLQIVHPAGKTLVDISMSQDAEVGDGTTSVVLLAGEFLRECKPYIEEGVHPQVIVKAFREACKLALGRLDELEVKLDmQTPEKLREMLEKSAGTSLSSKLVSGQKAFFAKMVVDAVLGIGKTGNLDMIGMKKVPGGSLIDSMLVEGVAFKKTFsyaGFEQmTKYFDNPKIVLLNVELEL-KAERDNAEVRVADVAAYQRVVDAEWDIIYDKLAKIVASGASIVLSRLAIGDLATQYFADRGLFCAGRVAEDDLKRVAKATGAVLQTSCNDLSADIMGSCGLFEERQVGGERFNFFKGCKCADTNTIILRGGAEQFIEEAERSLHDAIMNTRRLLVNPSVVAGGGAIEMEISAFLRERSRGIYGKTQLLIAAYAKALEVIPRQVASNAGMDPTDVLNKLRMKHAHGGTWFGVDVVENGICDTFESFVWEATVMKRNALAAASEAACLILSVDETVRN 531
                 4444455555679****************9988766..99*********************************************************************************999985416679*********************************************************************98333444427889************97.677789*****************************************************************************999999999999*********************************************************************************************************************************************************************************9985 PP

>> TIGR02343  chap_CCT_epsi: T-complex protein 1, epsilon subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  337.0   1.1    1e-103  4.3e-101      23     530 ..      25     530 ..      10     532 .. 0.95

  Alignments for each domain:
  == domain 1    score: 337.0 bits;  conditional E-value: 1e-103
   TIGR02343  23 lkGleakksniaaakavasilrtslGpkGldkiliskdgditvtndGatilekmdldeeiakllvelsksqdeeiGdGttgvvvlasalleqaeklldkGihpikiaeGfekaakvavekleeiaeeisvd..ednketllkaaktslgskivskskrrlaeiavdavlavadlerkdvdfdlikvegkvGgsledtklikGilidkdlshp...qmkkevkdakiailtcpfeppkpktkhkldissveeykklekyekekfeemiddikksGanlvicqwGfddeanhlllqndlpavrwvgGkeleliaiatgGrivprfeelseeklGkaklvreksfGttkdrllvieqskeskavtilvrGgnkliieeakrslhdalcvvrnlikdsrivyGGGaaeiacslaveeeadklsgveqyairafaealeeiplalaensGldpietlsevkakqlkeknpalGvdcleeGtndmkelkvletligkkqqillatqlvkmilkiddvis 530
                  +G     sni a++a+  ++rt+lGp+G+dk++ + +g +t++ndGat+++++++ ++  k lv++s sqd e+GdGtt+vv+la+ +l + +  +++G+hp  i + f +a+k+a+ +l+e+  +++++  e+ +e+l k+a tsl+sk+vs +k  +a+++vdavl +     k  ++d+i +++  Ggsl d+ l++G+  +k +s+    qm+k  ++ ki +l   +e    +   ++ ++ v  y+++ + e +   + + +i  sGa++v+ +    d a + + +++l     v+  +l+ +a atg  + +  ++ls++ +G+++l +e+++G   +r+ + + +k++ + ti++rGg++  ieea+rslhda+   r l+ + ++v GGGa e+ +s  + e + ++ g  q  i a+a+ale ip  +a n+G+dp ++l +++ k  +   + +Gvd  e+G  d  e +v e+ + k++ +  a++   +il +d+ + 
  MMETSP1137-20121227|2241_1  25 SQGKPQLISNINACQAIVDVVRTTLGPRGMDKLIHDDNGRVTISNDGATLMKQLQIVHPAGKTLVDISMSQDAEVGDGTTSVVLLAGEFLRECKPYIEEGVHPQVIVKAFREACKLALGRLDELEVKLDMQtpEKLREMLEKSAGTSLSSKLVSGQKAFFAKMVVDAVLGIG----KTGNLDMIGMKKVPGGSLIDSMLVEGVAFKKTFSYAgfeQMTKYFDNPKIVLLNVELELKAERDNAEVRVADVAAYQRVVDAEWDIIYDKLAKIVASGASIVLSRLAIGDLATQYFADRGLFCAGRVAEDDLKRVAKATGAVLQTSCNDLSADIMGSCGLFEERQVGG--ERFNFFKGCKCADTNTIILRGGAEQFIEEAERSLHDAIMNTRRLLVNPSVVAGGGAIEMEISAFLRERSRGIYGKTQLLIAAYAKALEVIPRQVASNAGMDPTDVLNKLRMKHAHG-GTWFGVDVVENGICDTFESFVWEATVMKRNALAAASEAACLILSVDETVR 530
                 56778889******************************************************************************************************************998888776225699********************************997....56799*****************************74444********************************************************************************************************************************7..5788899*******************************************************************************************************998765.5789******************************************9876 PP

>> TIGR02346  chap_CCT_theta: T-complex protein 1, theta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  293.1   0.1   1.8e-90   7.3e-88       5     517 ..      17     529 ..      13     541 .. 0.94

  Alignments for each domain:
  == domain 1    score: 293.1 bits;  conditional E-value: 1.8e-90
   TIGR02346   5 llkeGyrhlsgleeavlknieaikelseitrtslGPngmnklvinhleklfvtnDaatilrelevqhPaakllvlaskaqeeelGDgtnlvlvlagelLekaeelirlGlspseiikGyelalkkalevLeelvvl.evkdleekee.likalkaslsskqlgn.edilaelvakaiitvlPknsekfnvdnirvvkllGgslsdsevlkGlvlkrea.....egsvkrvkdakvavfscpldtattetkGtvLlknaeelldyskgeekkiealikeiadsgvkvivaggsvsdlalhyvekykilvlkisskfelrrlckvvgatalvrlsapspeelGlvdsvkveeigskkvtvikqeeedskistivLrGstknllddieraidDGvnvvkalvkdsrllpGagateieLakklkkyaeklkgleqyaikkfaeafeiiPrtlaenaGlnanevlskLyaahkkgnkslgidiekesdavkdvkeekiyDllaakkfaiklateaavtvLkvDqii 517
                 ll+eG+ + +g   +++ ni+a++ + +++rt+lGP+gm+kl+ +   ++ ++nD at++++l+++hPa k lv++s  q+ e+GDgt  v+ lage+L++++  i+ G++p+ i+k +  a+k al  L+el v  ++++ e+  e l+k   +slssk ++  + ++a++v +a++ +     ++ n+d i + k+ Ggsl ds +++G+ +k+       e   k  ++ k++ ++  l+ ++      v + +         +e   i +++ +i  sg++++++  +++dla  y    +++     +  +l+r++k+ ga+ ++  +  s + +G++   + + +g+++   +k  +  + ++ti+LrG +++++++ er+++D +   + l+ +  +++G+ga e+e++  l++ +    g +q+ i  +a+a e+iPr +a naG+++++vl+kL  +h +g +  g+d+ ++   + d+ e+ +++    k+ a+  a+eaa+ +L+vD  +
  MMETSP1137-20121227|2241_1  17 LLREGTDTSQGK-PQLISNINACQAIVDVVRTTLGPRGMDKLIHDDNGRVTISNDGATLMKQLQIVHPAGKTLVDISMSQDAEVGDGTTSVVLLAGEFLRECKPYIEEGVHPQVIVKAFREACKLALGRLDELEVKlDMQTPEKLREmLEKSAGTSLSSKLVSGqKAFFAKMVVDAVLGIG----KTGNLDMIGMKKVPGGSLIDSMLVEGVAFKKTFsyagfEQMTKYFDNPKIVLLNVELELKAERDNAEVRVADVAAYQRVVDAEWDIIYDKLAKIVASGASIVLSRLAIGDLATQYFADRGLFCAGRVAEDDLKRVAKATGAVLQTSCNDLSADIMGSCGLFEERQVGGERFNFFKGCKC-ADTNTIILRGGAEQFIEEAERSLHDAIMNTRRLLVNPSVVAGGGAIEMEISAFLRERSRGIYGKTQLLIAAYAKALEVIPRQVASNAGMDPTDVLNKLRMKHAHGGTWFGVDVVENG--ICDTFESFVWEATVMKRNALAAASEAACLILSVDETV 529
                 899**9998886.6899********************************************************************************************************************887688888876652678899******9865399**********9985....4689**************************97422222556677899**************************999999**********************************99999999999888999*********************************************9887.99**************************999999999***************************************************************************97765..57********************************977 PP

>> TIGR02347  chap_CCT_zeta: T-complex protein 1, zeta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  279.4   0.5   2.7e-86   1.1e-83       4     526 ..      17     532 ..      14     536 .. 0.94

  Alignments for each domain:
  == domain 1    score: 279.4 bits;  conditional E-value: 2.7e-86
   TIGR02347   4 llnkkaevlrkdaalkvnlnaakglqdvlktnlGPkGtlkmlvsgaGdikltkdGnvllkelqiqhPtasliaraaaaqdditGdGttstviligellkqaerlieeglhPrilteGleiakkealefleklki...kkeeevdrelllevartslrtkleaeladklteivvdavlaikkdeeeidlfmveilemkhklevdtklirGlvldhGarhP...dmkrkvknvyiltlnvsleyektevnsgfvyssaeereklveaerkfvddrvkkiielkkkvvekkadkgfvvinqkGidplsldllakegilalrrakrrnlerltlacGGealnsvedltpeslGyaGlvyetvigeekytfieevknPksvtilikgpndhtlkqikdavrdGlravknaiedkcvvaGagafeiallkklkeekksvkGkaklgveafaeallviPkvlvensGydvqevlvkledeadearevvgvdletgesivaelkgiwdnysvkkqllssatviasqlllvdevlraG 526
                 ll + +++++ +  l  n+na++++ dv++t lGP+G  k++ +  G + +  dG +l+k+lqi hP+ + +  ++ +qd  +GdGtts+v+l+ge+l+ ++ +ieeg+hP+++++ +  a k al  l++l +    ++ e  re+l++ a tsl  kl       ++++vvdavl i k ++   l m+ + ++   + +d  l++G+ +   + +    +m +   n  i+ lnv le      n+++   ++   +++v+ae   + d+++ki+               +v+ +  i  l+ + +a +g+++  r+   +l r+  a+G + + s +dl+ +++G +Gl  e  +g e++ f + +k   + ti+++g  ++ ++  + +++d +   +  + + +vvaG ga+e+ +++ l+e+ + + Gk++l + a+a+al viP+ +++n+G+d ++vl kl+ ++ ++++  gvd+  +  +++ ++ +w++  +k+++l +a+  a+ +l vde +r  
  MMETSP1137-20121227|2241_1  17 LLREGTDTSQGKPQLISNINACQAIVDVVRTTLGPRGMDKLIHDDNGRVTISNDGATLMKQLQIVHPAGKTLVDISMSQDAEVGDGTTSVVLLAGEFLRECKPYIEEGVHPQVIVKAFREACKLALGRLDELEVkldMQTPEKLREMLEKSAGTSLSSKLVSGQKAFFAKMVVDAVLGIGKTGN---LDMIGMKKVPGGSLIDSMLVEGVAFKKTFSYAgfeQMTKYFDNPKIVLLNVELELKAERDNAEVRVADVAAYQRVVDAEWDIIYDKLAKIVASGA----------SIVLSRLAIGDLATQYFADRGLFCAGRVAEDDLKRVAKATGAVLQTSCNDLSADIMGSCGLFEERQVGGERFNFFKGCKCADTNTIILRGGAEQFIEEAERSLHDAIMNTRRLLVNPSVVAGGGAIEMEISAFLRERSRGIYGKTQLLIAAYAKALEVIPRQVASNAGMDPTDVLNKLRMKHAHGGTWFGVDVVENGICDTFESFVWEATVMKRNALAAASEAACLILSVDETVRNP 532
                 566777888889999********************************************************************************************************************99933222334569**********************************99886...99************************9987642227999999*************99999****************************9986433..........3677778899***************************************************************************************************************************************************************************************9999************************************9975 PP

>> TIGR02348  GroEL: chaperonin GroL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.5   0.3   3.9e-15   1.6e-12      19     222 ..      39     250 ..      27     258 .. 0.78
   2 !   35.1   0.1   2.9e-12   1.2e-09     384     521 ..     388     530 ..     373     535 .. 0.85

  Alignments for each domain:
  == domain 1    score: 44.5 bits;  conditional E-value: 3.9e-15
   TIGR02348  19 dkladavkvtlGPkgrnvvleksfGaPkitkdGvtvakeieledkfenlGaklvkevasktndvaGdGtttatvlaqaivkeGlknvaaGanpielkrGiekavekvveelkklskevkdk..eeiaqvatis..........anndeeiGeliaeamekvgkdGvitveesksle....televveGmqfdrGyvspyfvtdaekmevelenplilitd 222
                 +++ d v++tlGP+g + +++ + G  +i +dG t+ k++++ ++    G  lv  ++   +   GdGtt  ++la  +++e    +  G+ p  + +   +a++ ++ +l++l  +++ +  e+++++   s          +++     +++ +a+  +gk G +++   k++      +  +veG+ f + +  +      e+m+  ++np+i++ +
  MMETSP1137-20121227|2241_1  39 QAIVDVVRTTLGPRGMDKLIHDDNGRVTISNDGATLMKQLQIVHP---AGKTLVD-ISMSQDAEVGDGTTSVVLLAGEFLRECKPYIEEGVHPQVIVKAFREACKLALGRLDELEVKLDMQtpEKLREMLEKSagtslssklvSGQKAFFAKMVVDAVLGIGKTGNLDMIGMKKVPggslIDSMLVEGVAFKKTFSYAG----FEQMTKYFDNPKIVLLN 250
                 67899***********************************98766...6778885.566667778**********************************************998877654322666555443300001111113445567899******9**9998887777665411113456899****99987654....58999999999999876 PP

  == domain 2    score: 35.1 bits;  conditional E-value: 2.9e-12
   TIGR02348 384 etelkekkarvedalnatra.aveeGivaGGGvallraaeklee.lkeksedekvGveivkraleaPlrqiaenaGkdgavvvekvkekk...deevGfnaatdeyedlveaGiidpakvtrsalqnaasiagllltteavva 521
                 e  + e    + da+ +tr   v+  +vaGGG+  +++++ l e  +     +++ +    +ale   rq+a+naG+d++ v++k++ k+   ++ +G +  ++   d +e+ + +++ + r al  a+  a l+l  + +v 
  MMETSP1137-20121227|2241_1 388 EQFIEEAERSLHDAIMNTRRlLVNPSVVAGGGAIEMEISAFLRErSRGIYGKTQLLIAAYAKALEVIPRQVASNAGMDPTDVLNKLRMKHahgGTWFGVDVVENGICDTFESFVWEATVMKRNALAAASEAACLILSVDETVR 530
                 555667777899**99987527899*****************99455556699999999**************************9988511145689**************************************9887776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (597 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       149  (0.0363237); expected 82.0 (0.02)
Passed bias filter:                      107  (0.0260848); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                        10  (0.00243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.60u 0.20s 00:00:00.80 Elapsed: 00:00:00.80
# Mc/sec: 984.97
//
Query:       MMETSP1137-20121227|2243_1  [L=221]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00017   18.5   6.3    0.00021   18.1   4.3    1.1  1  TIGR03773 anch_rpt_wall: putative ABC transporter-associated repeat protein


Domain annotation for each model (and alignments):
>> TIGR03773  anch_rpt_wall: putative ABC transporter-associated repeat protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   4.3   5.2e-08   0.00021     150     251 ..      26     139 ..      15     168 .. 0.75

  Alignments for each domain:
  == domain 1    score: 18.1 bits;  conditional E-value: 5.2e-08
   TIGR03773 150 adgtakseaetytvaVgkve.vdkvdParsatgagkeekdanagaadkplfddsasgv.qaledesassngsqkvvriGks..........lpvkaPkgvaavvakaapstgss 251
                 +   a+++ +  +  V++v+   +v+P r  t  ++++++a++++a+kp++  ++s + + l+d  + ++++ +++riG++           pv +P + a+v ++ a+  + +
  MMETSP1137-20121227|2243_1  26 QRQAAAAKRQATKGYVPSVSrSPSVSPVRHHTRGNRPGHEAITPPAAKPVQRTNGSTNdNGLNDAQSKAGTTGHAARIGNTstravngtksAPVRMPSEEAKVLSERARVLNRA 139
                 4444444555555556665515577**************************99998752456666677777888888988899999999999***********99988765554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (221 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       129  (0.0314481); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.20u 0.16s 00:00:00.36 Elapsed: 00:00:00.40
# Mc/sec: 729.24
//
Query:       MMETSP1137-20121227|2244_1  [L=558]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (558 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       115  (0.0280351); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.17s 00:00:00.53 Elapsed: 00:00:00.50
# Mc/sec: 1473.00
//
Query:       MMETSP1137-20121227|2245_1  [L=107]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (107 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        36  (0.00877621); expected 82.0 (0.02)
Passed bias filter:                       33  (0.00804486); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.14s 00:00:00.29 Elapsed: 00:00:00.31
# Mc/sec: 455.58
//
Query:       MMETSP1137-20121227|2246_1  [L=265]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.8e-34  117.1   0.6    2.6e-34  116.7   0.4    1.2  1  TIGR00027 mthyl_TIGR00027: putative methyltransferase, TIGR00027 family


Domain annotation for each model (and alignments):
>> TIGR00027  mthyl_TIGR00027: putative methyltransferase, TIGR00027 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  116.7   0.4   6.3e-38   2.6e-34       3     211 ..       4     215 ..       2     242 .. 0.82

  Alignments for each domain:
  == domain 1    score: 116.7 bits;  conditional E-value: 6.3e-38
   TIGR00027   3 tAlgvaaarAleterpdrlvrDplAaaflsaagrlrldskleaeaeaeekelggladfvavRtrffDdflleavaagvrqvViLgAGlDtRAyRldwpegtrvFEvDqp.evlefKekvlkelgaeppahrraVavDlr..qdwpaaLaaaGfdaeaptawlaeGllvYLteeavdallafiaels.apGSrlafdvvekldeeelraklkkk 211
                 + +g a+ rA+e e+  +l+ DplA+ +++a +     ++l+   ++ +++l+ + +f  +  r++++ +   ++   rqvV+Lg+GlD+R yRl     t+++EvD + + l+ K++vlk   ++p++++r+V +D    +++++aL a+Gfd++ pt w+ e +l   ++++ ++ +++ ++l  a+GS +a+ v e++++   +a  ++ 
  MMETSP1137-20121227|2246_1   4 ATVGAALRRAIEYEQTSPLCVDPLARLLVDALASQEERRTLSESVQDPQSSLASVCAFTRLTDRWLEAPIWPPARTTRRQVVMLGSGLDARPYRLGISRATTLYEVDFDeKLLHEKHSVLKAAAQKPRCNIRVVGADPSsaESYSDALKANGFDPSLPTRWVFERVLDDFSAAQLATHFTMANALGgAAGSGVAAHVSERAND-ASKATRDSR 215
                 46789999************************965555555555555555555999999999999999999999999******************************76157899**********************98889*************************************9999985378*********88655.223322222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (265 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       109  (0.0265724); expected 82.0 (0.02)
Passed bias filter:                       98  (0.0238908); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.24u 0.14s 00:00:00.38 Elapsed: 00:00:00.48
# Mc/sec: 728.69
//
Query:       MMETSP1137-20121227|2247_1  [L=41]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (41 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        41  (0.00999512); expected 82.0 (0.02)
Passed bias filter:                       39  (0.00950756); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:00.28
# Mc/sec: 186.61
//
Query:       MMETSP1137-20121227|2248_1  [L=101]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        41  (0.00999512); expected 82.0 (0.02)
Passed bias filter:                       41  (0.00999512); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.14s 00:00:00.26 Elapsed: 00:00:00.27
# Mc/sec: 493.74
//
Query:       MMETSP1137-20121227|2249_1  [L=133]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (133 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        29  (0.00706972); expected 82.0 (0.02)
Passed bias filter:                       26  (0.00633837); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.17s 00:00:00.33 Elapsed: 00:00:00.28
# Mc/sec: 605.33
//
Query:       MMETSP1137-20121227|2250_1  [L=336]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (336 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       144  (0.0351048); expected 82.0 (0.02)
Passed bias filter:                      112  (0.0273038); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.13s 00:00:00.40 Elapsed: 00:00:00.40
# Mc/sec: 1108.71
//
Query:       MMETSP1137-20121227|2251_1  [L=302]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.8e-25   86.4   8.7    8.7e-22   76.0   1.6    2.1  2  TIGR01385 TFSII: transcription elongation factor S-II


Domain annotation for each model (and alignments):
>> TIGR01385  TFSII: transcription elongation factor S-II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.2   9.7e-07     0.004      24      87 ..       5      73 ..       2      88 .. 0.75
   2 !   76.0   1.6   2.1e-25   8.7e-22     127     273 ..      89     246 ..      77     250 .. 0.77

  Alignments for each domain:
  == domain 1    score: 14.7 bits;  conditional E-value: 9.7e-07
   TIGR01385 24 idilk.qLk.klpvteellketkvGlkvnklrkkpned..ikklakeliksWKkvvikeeks.enpaga 87
                i++lk +L+ ++   +++l +tk+ + v kl k+   d  + +la+++i++W++ ++  + s +n+a+a
  MMETSP1137-20121227|2251_1  5 IELLKlVLDaDVKDKLKILSATKLSKVVVKLSKRDGCDreVRDLAEQVIQKWRRILNAPKASaKNAAPA 73
                5666634667788889***************998765446***************99853331333333 PP

  == domain 2    score: 76.0 bits;  conditional E-value: 2.1e-25
   TIGR01385 127 aklvalavtndkvRdkvrellveaLa.....kesdesasaidpealaveveellfeklgktekaykarvRsiifNlrdknNpdLrkkvltgeitpeklatlsaeelAsdelkqereki...kkealfeaqraka...ekavtDlFkCGkCkkkkvtYy 273
                  k  ++a+t +++Rd vr+ l ++       +es+  ++ +d+ ++a e+e+ lf++    +k+yk+r+Rs+ifNlrd++Npd   +v+ g+   + lat++ +++As+e+k+ r +    kk al++ +   +   +k +    kC kCk  k  Y+
  MMETSP1137-20121227|2251_1  89 FKSRPVAKTGEPTRDMVRQKLQQVFEagiaaNESRLREHESDTAEMAQEAEQALFDRYCGVDKEYKQRFRSLIFNLRDEKNPDFILSVVSGQTHVNDLATMDIKDMASEEMKRTRSNWvenKKMALMDSKSYEQytgKKQQDGILKCPKCKSMKTEYT 246
                 4445566666666666666666665411111456888999************************************************************************998754222677899886543311145555589*********9997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (302 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       211  (0.0514383); expected 82.0 (0.02)
Passed bias filter:                      131  (0.0319356); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.28u 0.16s 00:00:00.44 Elapsed: 00:00:00.44
# Mc/sec: 905.93
//
Query:       MMETSP1137-20121227|2252_1  [L=397]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (397 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       175  (0.0426621); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.16s 00:00:00.44 Elapsed: 00:00:00.38
# Mc/sec: 1378.94
//
Query:       MMETSP1137-20121227|2253_1  [L=154]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (154 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        44  (0.0107265); expected 82.0 (0.02)
Passed bias filter:                       40  (0.00975134); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.16s 00:00:00.32 Elapsed: 00:00:00.30
# Mc/sec: 677.54
//
Query:       MMETSP1137-20121227|2254_1  [L=161]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (161 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       202  (0.0492443); expected 82.0 (0.02)
Passed bias filter:                      138  (0.0336421); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.18s 00:00:00.38 Elapsed: 00:00:00.30
# Mc/sec: 708.34
//
Query:       MMETSP1137-20121227|2255_1  [L=274]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.5e-30  103.4   0.0    3.9e-30  102.8   0.0    1.3  1  TIGR00104 YaeB_AF0241: putative methyltransferase, YaeB/AF_0241 family


Domain annotation for each model (and alignments):
>> TIGR00104  YaeB_AF0241: putative methyltransferase, YaeB/AF_0241 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.8   0.0   9.5e-34   3.9e-30       3     141 ..      76     228 ..      74     230 .. 0.83

  Alignments for each domain:
  == domain 1    score: 102.8 bits;  conditional E-value: 9.5e-34
   TIGR00104   3 elqlkpigvvrsPykeksdvprqgrvsd.......evseieildey.adalkgleefshlivlywldkaerdekklkvrPprl......genkrkGvFatRspaRPnPiGlslvelkevern..ilkvkklDaldgtPviDikpysekidslkna 141
                 e++++pig v+sPyke++ +prq+ v+        +++e+ + +   + +l+gl+ f++ +v+ w++ ++    k+ + Pprl      g  +r+G FatR+p+RPn i ls  ++  v  +  +++v++lD++dgtP+ Dikpy+++ d+ ++a
  MMETSP1137-20121227|2255_1  76 EYTIRPIGFVKSPYKERFGTPRQATVETqilggtpQEGELVLDASIaKTSLRGLDGFDYCWVMSWMHLNTGY--KPLITPPRLrmgrkkGSVPRVGLFATRAPHRPNQIALSALRIVSVCEKsgVVRVRGLDLIDGTPIXDIKPYVPYCDAFPDA 228
                 789********************999872222222467777766667889*****************99866..99999998622222244567899*******************99987667**************************99886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (274 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        60  (0.014627); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.22u 0.16s 00:00:00.38 Elapsed: 00:00:00.47
# Mc/sec: 769.47
//
Query:       MMETSP1137-20121227|2256_1  [L=144]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      3e-21   73.8   0.0    4.1e-10   37.6   0.0    2.1  2  TIGR02227 sigpep_I_bact: signal peptidase I
    9.2e-08   30.3   0.0     0.0041   15.4   0.0    2.3  2  TIGR02754 sod_Ni_protease: nickel-type superoxide dismutase maturation protease
     0.0012   16.2   0.0      0.075   10.4   0.0    2.4  2  TIGR02771 TraF_Ti: conjugative transfer signal peptidase TraF
  ------ inclusion threshold ------
      0.038   11.7   0.0      0.055   11.2   0.0    1.4  1  TIGR02228 sigpep_I_arch: signal peptidase I


Domain annotation for each model (and alignments):
>> TIGR02227  sigpep_I_bact: signal peptidase I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.6   0.0     4e-13   4.1e-10      30      86 ..       1      62 [.       1      66 [. 0.86
   2 !   35.1   0.0   2.4e-12   2.4e-09     118     161 ..      66     110 ..      60     111 .. 0.91

  Alignments for each domain:
  == domain 1    score: 37.6 bits;  conditional E-value: 4e-13
   TIGR02227 30 Meptlkeg.....dlilvnklaygtaepkrgDivvfkapeeekkeyikRviglpGDkveird 86
                M+pt++++     d +l+nkl+ ++ +++rgD+++ ++p++ ++ + kRvi+++GD +  rd
  MMETSP1137-20121227|2256_1  1 MQPTFNARgdgscDALLLNKLSASWRSYQRGDVIIMRSPTHPTEMLAKRVIAMEGDLICTRD 62
                566666433334499******************************************98887 PP

  == domain 2    score: 35.1 bits;  conditional E-value: 2.4e-12
   TIGR02227 118 k.vkVPegkyfvLGDnrdnslDSRsiGlvkkdeivGkvsivllpl 161
                 k  +VP+g+++v GDn +ns+DS ++G+v +  ++++v + ++pl
  MMETSP1137-20121227|2256_1  66 KaIQVPKGHIWVEGDNANNSNDSNTFGPVAAGLVEARVEAKVWPL 110
                 3478***************************************97 PP

>> TIGR02754  sod_Ni_protease: nickel-type superoxide dismutase maturation protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   0.0   1.4e-05     0.014      16      64 ..      14      62 ..       1      68 [. 0.84
   2 !   15.4   0.0     4e-06    0.0041      51      88 ..      66     103 ..      59     105 .. 0.87

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 1.4e-05
   TIGR02754 16 drvlvqPllkiarvkeaGevvvvrHPlkpavliiKrlaavddnglellg 64
                d +l++ l    r  + G v+++r P +p+ ++ Kr++a++ + +  + 
  MMETSP1137-20121227|2256_1 14 DALLLNKLSASWRSYQRGDVIIMRSPTHPTEMLAKRVIAMEGDLICTRD 62
                77889999999999999**********************9876665555 PP

  == domain 2    score: 15.4 bits;  conditional E-value: 4e-06
   TIGR02754  51 rlaavddnglellgdnpkastdsrklGlvskelllGkv 88 
                 + ++v ++ +++ gdn + s ds+ +G+v  +l+  +v
  MMETSP1137-20121227|2256_1  66 KAIQVPKGHIWVEGDNANNSNDSNTFGPVAAGLVEARV 103
                 56789999*********************999887776 PP

>> TIGR02771  TraF_Ti: conjugative transfer signal peptidase TraF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    3.6   0.0    0.0089       9.1      82      98 ..      44      60 ..      18      69 .. 0.71
   2 !   10.4   0.0   7.4e-05     0.075     131     166 ..      68     104 ..      63     108 .. 0.89

  Alignments for each domain:
  == domain 1    score: 3.6 bits;  conditional E-value: 0.0089
   TIGR02771 82 epllKrvlalkGdrvtv 98
                e l Krv+a++Gd +  
  MMETSP1137-20121227|2256_1 44 EMLAKRVIAMEGDLICT 60
                45668888888887766 PP

  == domain 2    score: 10.4 bits;  conditional E-value: 7.4e-05
   TIGR02771 131 gvvpkglllvsdtsp.tSFDsRYfGlisreqvkgvvk 166
                   vpkg + v+++++ +S Ds  fG++ +  v+++v+
  MMETSP1137-20121227|2256_1  68 IQVPKGHIWVEGDNAnNSNDSNTFGPVAAGLVEARVE 104
                 579********999989*************9999985 PP

>> TIGR02228  sigpep_I_arch: signal peptidase I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   5.4e-05     0.055      50      85 ..      15      53 ..       1     103 [. 0.74

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 5.4e-05
   TIGR02228 50 lvlveg..vdpedikvGdvivykseekr.klviHrviei 85
                 +l+++  +  +++++Gdvi+ +s++++  +   rvi +
  MMETSP1137-20121227|2256_1 15 ALLLNKlsASWRSYQRGDVIIMRSPTHPtEMLAKRVIAM 53
                445554458899************998756777888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (144 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        59  (0.0143832); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.20u 0.15s 00:00:00.35 Elapsed: 00:00:00.32
# Mc/sec: 593.95
//
Query:       MMETSP1137-20121227|2257_1  [L=157]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (157 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       104  (0.0253535); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.16s 00:00:00.33 Elapsed: 00:00:00.55
# Mc/sec: 376.77
//
Query:       MMETSP1137-20121227|2258_1  [L=107]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (107 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        63  (0.0153584); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.38
# Mc/sec: 371.65
//
Query:       MMETSP1137-20121227|2260_1  [L=195]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (195 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       175  (0.0426621); expected 82.0 (0.02)
Passed bias filter:                      111  (0.02706); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.16s 00:00:00.36 Elapsed: 00:00:00.28
# Mc/sec: 919.21
//
Query:       MMETSP1137-20121227|2261_1  [L=416]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.5e-52  176.8   0.0    5.3e-30  102.2   0.0    3.0  3  TIGR01381 E1_like_apg7: E1-like protein-activating enzyme Gsa7p/Apg7p


Domain annotation for each model (and alignments):
>> TIGR01381  E1_like_apg7: E1-like protein-activating enzyme Gsa7p/Apg7p
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.2   0.0   1.3e-33   5.3e-30      10     179 ..       2     171 ..       1     193 [. 0.80
   2 !   12.9   0.0   1.4e-06    0.0056     205     241 ..     235     271 ..     216     300 .. 0.83
   3 !   58.3   0.0   2.6e-20   1.1e-16     241     343 ..     312     415 ..     297     416 .] 0.77

  Alignments for each domain:
  == domain 1    score: 102.2 bits;  conditional E-value: 1.3e-33
   TIGR01381  10 egffqevsklklnkyklddtpkaisgsldlkqiekvkqhlslsvdslsldesstiasasls.vkGilknlntvesfkkvdksellkseaekiwesiqsrkalkdpsvlsqfliisfadlkkfkfiyWfafPalvldskvsklel..ktesekeeieelesvsaelkdladldl 179
                  gf  ++ k+kl +y+l d+p  i +s++ +     ++++ +  +  ++d s+ +   s+   +G+l+n nt+e+fk  d s  l++ea +iw++i s+++   ps+ls+fl+++fadlk +k++yWfafPa+ l+++ +  ++     + + + +e++++ + +++l++++ 
  MMETSP1137-20121227|2261_1   2 AGFLSQLGKRKLREYGLSDAPVEIHASYGRCPRMSASSPMCVGPE--AFDASADGVPPSMCvAPGTLLNANTLEDFKEWDXSARLEAEAARIWKDICSGECWAKPSLLSRFLLLTFADLKSHKYYYWFAFPAFALSPPPTIASVpvALTEVV-DESEMQTLRTSYEELRKSNA 171
                 5899*************************9988777777666655..56666666556666258*********************************************************************9987644433310333333.33566667777777666665 PP

  == domain 2    score: 12.9 bits;  conditional E-value: 1.4e-06
   TIGR01381 205 eapddkllvgfidpssvaskagwqlrnvlalvaslgn 241
                  +p  ++ +g+ dps+ a  agw+lrn+lal+a+   
  MMETSP1137-20121227|2261_1 235 VTPFGQVWLGYCDPSTGAGAAGWPLRNLLALIAHEAA 271
                 34558999*************************9765 PP

  == domain 3    score: 58.3 bits;  conditional E-value: 2.6e-20
   TIGR01381 241 nlkkvyifslreadsi..asltlslvlaasaelss..eeaaeavpkavGWernaqgklvPksvdlakeldPkrlaersvdlnlkllkWrvlPeldlevlssvkvlll 343
                 +  +v ++++re+ +   +s  l + l a    s     a+ + p avGWern  +kl+P+++    +ldP  la  sv+lnl+l++Wr++P l+ e++  +++lll
  MMETSP1137-20121227|2261_1 312 PPVTVSVLAFRESAGAegGSQMLRVRLSADLLNSVgvAVAHGTRPPAVGWERNSANKLGPRLM---XQLDPIALATASVELNLRLMRWRLMPALEPERVGATRCLLL 415
                 55677788888887652244555554443322222113456899****************965...79*************************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (416 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        68  (0.0165773); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.17s 00:00:00.50 Elapsed: 00:00:00.39
# Mc/sec: 1407.88
//
Query:       MMETSP1137-20121227|2262_1  [L=303]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (303 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        95  (0.0231594); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.11s 00:00:00.36 Elapsed: 00:00:00.36
# Mc/sec: 1110.91
//
Query:       MMETSP1137-20121227|2263_1  [L=262]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      1e-06   24.6   7.3    1.4e-06   24.2   5.1    1.2  1  TIGR02168 SMC_prok_B: chromosome segregation protein SMC
    7.4e-06   21.7   8.1      1e-05   21.3   5.6    1.2  1  TIGR02169 SMC_prok_A: chromosome segregation protein SMC
     0.0012   15.7  11.1     0.0017   15.2   7.7    1.2  1  TIGR01843 type_I_hlyD: type I secretion membrane fusion protein, HlyD family
  ------ inclusion threshold ------
       0.58    8.1  16.5       0.98    7.4   0.6    3.9  5  TIGR00293 TIGR00293: prefoldin, alpha subunit
        1.3    6.8  15.2      0.083   10.7   1.6    3.5  3  TIGR02338 gimC_beta: prefoldin, beta subunit
        6.5    4.9  14.4       0.44    8.6   1.5    3.5  3  TIGR03930 WXG100_ESAT6: WXG100 family type VII secretion target


Domain annotation for each model (and alignments):
>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.2   5.1     2e-09   1.4e-06     230     385 ..      93     247 ..      62     261 .. 0.55

  Alignments for each domain:
  == domain 1    score: 24.2 bits;  conditional E-value: 2e-09
   TIGR02168 230 lvlrleelkeeleeleeelkeaeeeleeleaelkeleeeleelrlekseleeeleelqkelqelkaeisrleqeieilkerleqlekel.eeleeqleeleskkeeleeelaeleeeleelkeelesleaeleeaeaeleelesrleeleeeleelr 385
                 l+  le+++e+ +el++++++++ +++++ ++ +el+++++ l +e++ l++++++  ++   l+a++++le+e++ l++    l        e +++ l s+++ +++++a+l+ +lee+++e+++  ++ +++++ ++ l ++++ +++  ++l+
  MMETSP1137-20121227|2263_1  93 LLSALEDERERNKELTDKFQKLQVQCTTILKTKSELQAQVDALTAENAALSSTANSSGDTATVLNAQVKKLEAELQSLRDAP--LPPPVtTVSESDVASLMSELQGTQARVADLTSQLEEAQTEIQARIEKSKQFANMRQILAKKNAVVKDLRDQLS 247
                 4455566666666666666666666666666666666666666666666666666666666666666666666666666553..2222202223345555566666666666666666666665555555555544444444444444444333333 PP

>> TIGR02169  SMC_prok_A: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3   5.6   1.5e-08     1e-05     306     459 ..      92     247 ..      67     260 .. 0.80

  Alignments for each domain:
  == domain 1    score: 21.3 bits;  conditional E-value: 1.5e-08
   TIGR02169 306 kleraiaekeeeledaeerlakaeaeidklkeeieelereieeekkereklkeelkelkeeleelraeleevdkeaaelreelke...lkekleklkeelnelkreldrlleelkrleeelaelkaelerieekiaeleeeleelaeeikkaeqkle 459
                 kl +a+++++e+ +++ ++ +k++++   + +++ el+ ++ +  +e ++l++  +++ ++   l a+++++++e + lr++           +++ + + el++++ r  +   +lee++ e++a +e+ ++  a++ + l ++++ +k  + +l+
  MMETSP1137-20121227|2263_1  92 KLLSALEDERERNKELTDKFQKLQVQCTTILKTKSELQAQVDALTAENAALSSTANSSGDTATVLNAQVKKLEAELQSLRDAPLPppvTTVSESDVASLMSELQGTQARVADLTSQLEEAQTEIQARIEKSKQ-FANMRQILAKKNAVVKDLRDQLS 247
                 5556788888999999999999999999999999999999999999999999999999999999999999999999999998643111445556788999999999999999999999999999999998664.55566666666666666666655 PP

>> TIGR01843  type_I_hlyD: type I secretion membrane fusion protein, HlyD family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   7.7   2.5e-06    0.0017     116     263 ..      93     248 ..      67     253 .. 0.72

  Alignments for each domain:
  == domain 1    score: 15.2 bits;  conditional E-value: 2.5e-06
   TIGR01843 116 llsae.d..avaelvkeqeslfesrksalraqlesleaqikqleaeleglqaqlqalrqqleliseelealr....kLkekglvsrlelLelereraelqgelaeleaeleklkaeldeleeklqeleqkfr..eevseelreaqarlaeleeelsk 263
                 llsa  d  + ++ ++++ ++++ + +++ +++ +l+aq++ l ae + l + +++  +++++++ +++ l+    +L +  l + + +  +e  +a+l +el+ ++a+++ l ++l+e++ ++q  ++k +  +++++ l + +a +++l+ +ls+
  MMETSP1137-20121227|2263_1  93 LLSALeDerERNKELTDKFQKLQVQCTTILKTKSELQAQVDALTAENAALSSTANSSGDTATVLNAQVKKLEaelqSLRDAPLPPPV-TTVSESDVASLMSELQGTQARVADLTSQLEEAQTEIQARIEKSKqfANMRQILAKKNAVVKDLRDQLSA 248
                 333343445666667777777777777777888888888888888888888888888888888777766543211156666666655.5567899*************************9999988766541168888888888888888888876 PP

>> TIGR00293  TIGR00293: prefoldin, alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   0.6    0.0014      0.98      72     125 ..      81     134 ..      70     138 .. 0.84
   2 ?    3.8   0.8     0.019        13       6      40 ..     123     157 ..     120     168 .. 0.78
   3 ?    0.8   0.1      0.16   1.1e+02       4      19 ..     156     171 ..     153     174 .. 0.55
   4 ?    2.2   2.5     0.058        40      96     128 ..     188     220 ..     182     235 .. 0.73
   5 ?    5.7   2.4    0.0047       3.2      83     125 ..     207     248 ..     204     252 .. 0.91

  Alignments for each domain:
  == domain 1    score: 7.4 bits;  conditional E-value: 0.0014
   TIGR00293  72 VsiGagyyvekdleeAieilkkkieelekaieklqeelqelaseaqeieqelqq 125
                 Vs+G g     +l +A+e   ++ +el+ +++klq + +++ ++  e+++++ +
  MMETSP1137-20121227|2263_1  81 VSLGVGQTQDPKLLSALEDERERNKELTDKFQKLQVQCTTILKTKSELQAQVDA 134
                 66677777777777899999999**********************999999765 PP

  == domain 2    score: 3.8 bits;  conditional E-value: 0.019
   TIGR00293   6 aelqqlqeevealqaeiaalraliaeleeaietle 40 
                 +++ +lq++v+al+ae aal ++ ++   +   l+
  MMETSP1137-20121227|2263_1 123 KTKSELQAQVDALTAENAALSSTANSSGDTATVLN 157
                 57789999********9999999988877777766 PP

  == domain 3    score: 0.8 bits;  conditional E-value: 0.16
   TIGR00293   4 laaelqqlqeevealq 19 
                 l+a+++ l++e+++l+
  MMETSP1137-20121227|2263_1 156 LNAQVKKLEAELQSLR 171
                 4555555555555554 PP

  == domain 4    score: 2.2 bits;  conditional E-value: 0.058
   TIGR00293  96 eelekaieklqeelqelaseaqeieqelqqkqq 128
                   l ++++ +q+ +++l+s+ +e ++e+q++++
  MMETSP1137-20121227|2263_1 188 ASLMSELQGTQARVADLTSQLEEAQTEIQARIE 220
                 566677777777777777777777777777665 PP

  == domain 5    score: 5.7 bits;  conditional E-value: 0.0047
   TIGR00293  83 dleeAieilkkkieelekaieklqeelqelaseaqeieqelqq 125
                 +leeA   ++++ie+ +k++ ++ ++l+++ +  ++++++l++
  MMETSP1137-20121227|2263_1 207 QLEEAQTEIQARIEK-SKQFANMRQILAKKNAVVKDLRDQLSA 248
                 689***********9.8999*******************9987 PP

>> TIGR02338  gimC_beta: prefoldin, beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   1.6   0.00012     0.083      65     103 ..     100     138 ..      92     143 .. 0.87
   2 ?   -1.5   0.0      0.75   5.1e+02      94     106 ..     157     169 ..     152     173 .. 0.46
   3 ?    2.3   1.5     0.052        36      36      74 ..     208     244 ..     184     255 .. 0.48

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 0.00012
   TIGR02338  65 keevleeLeekketlelrvktlekQeerlrekleelqek 103
                   e  +eL++k + l+++  t+ k +++l+++++ l+++
  MMETSP1137-20121227|2263_1 100 ERERNKELTDKFQKLQVQCTTILKTKSELQAQVDALTAE 138
                 556789****************************99875 PP

  == domain 2    score: -1.5 bits;  conditional E-value: 0.75
   TIGR02338  94 rekleelqekiqe 106
                 ++++++l++++q 
  MMETSP1137-20121227|2263_1 157 NAQVKKLEAELQS 169
                 3344444444332 PP

  == domain 3    score: 2.3 bits;  conditional E-value: 0.052
   TIGR02338  36 vekaLeelekleddtkvYksvGnllvktdkeevleeLee 74 
                  e+a  e++   +++k + ++ ++l k  k+ v+++L++
  MMETSP1137-20121227|2263_1 208 LEEAQTEIQARIEKSKQFANMRQILAK--KNAVVKDLRD 244
                 222222333333334444444444432..4445555555 PP

>> TIGR03930  WXG100_ESAT6: WXG100 family type VII secretion target
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.0       3.8   2.6e+03      70      86 ..      15      31 ..       9      33 .. 0.58
   2 ?    8.6   1.5   0.00065      0.44       7      65 ..     112     172 ..     105     173 .. 0.77
   3 ?    1.2   2.1      0.13        92      14      48 ..     192     220 ..     180     254 .. 0.49

  Alignments for each domain:
  == domain 1    score: -3.4 bits;  conditional E-value: 3.8
   TIGR03930 70 iseelrqaakkfeqade 86
                +++++   ++ feq+++
  MMETSP1137-20121227|2263_1 15 MNSTVLLVKQIFEQVEK 31
                45555555666666664 PP

  == domain 2    score: 8.6 bits;  conditional E-value: 0.00065
   TIGR03930   7 eeleqaAkrfqktaqelqqelqrlrseidalqst..WeGaAaqafdaefaewkpaaerlne 65 
                 + l+   +++ kt++elq++++ l++e +al st   +G++a+  +a+ ++++++++ l++
  MMETSP1137-20121227|2263_1 112 QKLQVQCTTILKTKSELQAQVDALTAENAALSSTanSSGDTATVLNAQVKKLEAELQSLRD 172
                 6666667788888899999999999999988866557888888888888888888887765 PP

  == domain 3    score: 1.2 bits;  conditional E-value: 0.13
   TIGR03930  14 krfqktaqelqqelqrlrseidalqstWeGaAaqa 48 
                 +++q+t++++ ++ ++l+  ++++q+      + +
  MMETSP1137-20121227|2263_1 192 SELQGTQARVADLTSQLEEAQTEIQA------RIE 220
                 33333333333333333333333333......333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (262 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       478  (0.116529); expected 82.0 (0.02)
Passed bias filter:                      179  (0.0436373); expected 82.0 (0.02)
Passed Vit filter:                        19  (0.00463189); expected 4.1 (0.001)
Passed Fwd filter:                         8  (0.00195027); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.34u 0.18s 00:00:00.52 Elapsed: 00:00:00.44
# Mc/sec: 785.94
//
Query:       MMETSP1137-20121227|2264_1  [L=580]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (580 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        77  (0.0187713); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.13s 00:00:00.52 Elapsed: 00:00:00.49
# Mc/sec: 1562.32
//
Query:       MMETSP1137-20121227|2266_1  [L=123]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.8e-24   81.7   0.3    1.2e-23   81.2   0.2    1.2  1  TIGR02007 fdx_isc: ferredoxin, 2Fe-2S type, ISC system
    9.4e-09   32.5   0.1    1.1e-08   32.2   0.1    1.0  1  TIGR01941 nqrF: NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit
     0.0024   15.4   0.1     0.0031   15.1   0.1    1.2  1  TIGR02008 fdx_plant: ferredoxin [2Fe-2S]
  ------ inclusion threshold ------
      0.014   12.0   0.3      0.017   11.7   0.2    1.1  1  TIGR02160 PA_CoA_Oxy5: phenylacetate-CoA oxygenase/reductase, PaaK subunit


Domain annotation for each model (and alignments):
>> TIGR02007  fdx_isc: ferredoxin, 2Fe-2S type, ISC system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.2   0.2   1.1e-26   1.2e-23      16      93 ..      27     105 ..      18     120 .. 0.90

  Alignments for each domain:
  == domain 1    score: 81.2 bits;  conditional E-value: 1.1e-26
   TIGR02007  16 avveakeGetildvalkaeieiehacekscacttchvivrkG.fdsleeasekeedlldkawGleaesrlscqavvade 93 
                 + v+a+eG+++l+va+ +++e+e ac++s ac+tchvi+ k  fd+l    e+e d+ld a+ l  +srl+cq++v++e
  MMETSP1137-20121227|2266_1  27 VHVKAQEGKSLLEVAHANDVELEGACDGSLACSTCHVILEKAvFDALPPPVEEELDMLDLAFDLTETSRLGCQIKVSKE 105
                 5678899********************************88559********************************986 PP

>> TIGR01941  nqrF: NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.2   0.1   1.1e-11   1.1e-08      36     116 ..      21     106 ..       6     112 .. 0.84

  Alignments for each domain:
  == domain 1    score: 32.2 bits;  conditional E-value: 1.1e-11
   TIGR01941  36 inddeeksltveaGdkllntlaskgifissacGGggscgqcrvrvvegggeilp....tekshis.kreakegwrlscqvkvkedl 116
                 i++ ee +++++ G+ ll++ +++++ +  ac G  +c+ c+v + ++  + lp     e++++    ++ e  rl cq+kv ++l
  MMETSP1137-20121227|2266_1  21 IENGEEVHVKAQEGKSLLEVAHANDVELEGACDGSLACSTCHVILEKAVFDALPppveEELDMLDlAFDLTETSRLGCQIKVSKEL 106
                 56679999***************************************999998633224566665245899***********9987 PP

>> TIGR02008  fdx_plant: ferredoxin [2Fe-2S]
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.1     3e-06    0.0031      10      58 ..      22      71 ..      15     105 .. 0.83

  Alignments for each domain:
  == domain 1    score: 15.1 bits;  conditional E-value: 3e-06
   TIGR02008 10 edgseetievpddeyildaaeeeGidlpyscr.aGacstcaGkvkeGtvd 58
                e+g+e ++++++ + +l++a  + ++l  +c  + acstc  ++++   d
  MMETSP1137-20121227|2266_1 22 ENGEEVHVKAQEGKSLLEVAHANDVELEGACDgSLACSTCHVILEKAVFD 71
                45668999***********************83569*****999998776 PP

>> TIGR02160  PA_CoA_Oxy5: phenylacetate-CoA oxygenase/reductase, PaaK subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.2   1.7e-05     0.017     258     312 ..      11      65 ..       2      72 .. 0.83

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 1.7e-05
   TIGR02160 258 pegdqakvtvtldGlsreislsaedesvldaalraradlPfackgGv.cgtcrakv 312
                   +d+  + ++ +G +   +   e +s+l++a  + ++l  ac g + c+tc++ +
  MMETSP1137-20121227|2266_1  11 KSADSVPICFIENGEE-VHVKAQEGKSLLEVAHANDVELEGACDGSLaCSTCHVIL 65 
                 5678888999999998.666777889******************985599**8754 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (123 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       113  (0.0275475); expected 82.0 (0.02)
Passed bias filter:                      107  (0.0260848); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.16u 0.14s 00:00:00.30 Elapsed: 00:00:00.28
# Mc/sec: 579.81
//
Query:       MMETSP1137-20121227|2267_1  [L=283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (283 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       104  (0.0253535); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.18s 00:00:00.42 Elapsed: 00:00:00.46
# Mc/sec: 812.02
//
Query:       MMETSP1137-20121227|2268_1  [L=278]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (278 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        68  (0.0165773); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.16s 00:00:00.38 Elapsed: 00:00:00.31
# Mc/sec: 1183.64
//
Query:       MMETSP1137-20121227|2269_1  [L=494]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.3e-15   54.3   2.1    0.00075   17.4   0.0    5.7  6  TIGR00756 PPR: pentatricopeptide repeat domain
    1.4e-10   38.9   0.0      2e-10   38.4   0.0    1.2  1  TIGR02349 DnaJ_bact: chaperone protein DnaJ
    8.2e-09   32.2   0.0    1.1e-08   31.8   0.0    1.1  1  TIGR03835 termin_org_DnaJ: terminal organelle assembly protein TopJ


Domain annotation for each model (and alignments):
>> TIGR00756  PPR: pentatricopeptide repeat domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   3.5e-06    0.0048       6      34 ..     239     267 ..     235     268 .. 0.92
   2 ?   -1.1   0.0      0.43   5.9e+02       2      10 ..     270     278 ..     269     281 .. 0.78
   3 !    5.2   0.1    0.0042       5.8      16      34 ..     299     317 ..     296     317 .. 0.87
   4 !   17.4   0.0   5.5e-07   0.00075       2      29 ..     320     347 ..     319     352 .. 0.94
   5 !   10.6   0.0     8e-05      0.11       2      25 ..     356     379 ..     355     384 .. 0.93
   6 ?   -1.1   0.0      0.41   5.5e+02      18      33 ..     417     432 ..     414     434 .. 0.80

  Alignments for each domain:
  == domain 1    score: 14.8 bits;  conditional E-value: 3.5e-06
   TIGR00756   6 lisglckagrveeAlelfdeMkergivPd 34 
                 +i  + +a+++ eA+  f++Mke++++P+
  MMETSP1137-20121227|2269_1 239 IIYQHLRANELAEAFAAFEDMKEDDVKPT 267
                 788899**********************7 PP

  == domain 2    score: -1.1 bits;  conditional E-value: 0.43
   TIGR00756   2 tyntlisgl 10 
                 +y +li+g+
  MMETSP1137-20121227|2269_1 270 VYEMLIRGC 278
                 688899988 PP

  == domain 3    score: 5.2 bits;  conditional E-value: 0.0042
   TIGR00756  16 veeAlelfdeMkergivPd 34 
                 +++++el+ eM+e++++ d
  MMETSP1137-20121227|2269_1 299 LKKVKELWAEMEEKKLKAD 317
                 6899**********99876 PP

  == domain 4    score: 17.4 bits;  conditional E-value: 5.5e-07
   TIGR00756   2 tyntlisglckagrveeAlelfdeMker 29 
                 +yn li++l+kag + e++++fd+M+++
  MMETSP1137-20121227|2269_1 320 SYNELIRALGKAGAIPEMMQVFDKMCRN 347
                 8************************986 PP

  == domain 5    score: 10.6 bits;  conditional E-value: 8e-05
   TIGR00756   2 tyntlisglckagrveeAlelfde 25 
                 ++n++  +++ +g+++eAle+f e
  MMETSP1137-20121227|2269_1 356 AFNSMYEACVLSGHYSEALEVFVE 379
                 69*******************965 PP

  == domain 6    score: -1.1 bits;  conditional E-value: 0.41
   TIGR00756  18 eAlelfdeMkergivP 33 
                 +  +++++M ++g+ P
  MMETSP1137-20121227|2269_1 417 KLPRILELMGRQGVLP 432
                 566899*******998 PP

>> TIGR02349  DnaJ_bact: chaperone protein DnaJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.4   0.0   1.5e-13     2e-10       2      54 ..     132     183 ..     131     187 .. 0.94

  Alignments for each domain:
  == domain 1    score: 38.4 bits;  conditional E-value: 1.5e-13
   TIGR02349   2 YYeiLgvskdAseeeikkAYrklakkyHPDrnkgekeaeekfkeineAyevLs 54 
                  Y +Lg++ +A++e+ik AY +la++ HPDr+k  + a ++f ei  Ay+ L 
  MMETSP1137-20121227|2269_1 132 PYAVLGLPPHATREQIKLAYYQLAMRSHPDRSK-VPGAANRFAEIGAAYNQLM 183
                 59*******************************.***************9775 PP

>> TIGR03835  termin_org_DnaJ: terminal organelle assembly protein TopJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.8   0.0   7.9e-12   1.1e-08       2      54 ..     130     182 ..     129     185 .. 0.96

  Alignments for each domain:
  == domain 1    score: 31.8 bits;  conditional E-value: 7.9e-12
   TIGR03835   2 rDyyevLgidrDadeqeikkafrkLakkyhPDrnkaadaakifaeineandvL 54 
                 rD y vLg+ + a  ++ik a+ +La + hPDr k + aa+ faei  a++ L
  MMETSP1137-20121227|2269_1 130 RDPYAVLGLPPHATREQIKLAYYQLAMRSHPDRSKVPGAANRFAEIGAAYNQL 182
                 9************************************************9866 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (494 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        84  (0.0204778); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.35u 0.13s 00:00:00.48 Elapsed: 00:00:00.48
# Mc/sec: 1358.39
//
Query:       MMETSP1137-20121227|2271_1  [L=146]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (146 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        62  (0.0151146); expected 82.0 (0.02)
Passed bias filter:                       36  (0.00877621); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.21s 00:00:00.32 Elapsed: 00:00:00.39
# Mc/sec: 494.11
//
Query:       MMETSP1137-20121227|2272_1  [L=114]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (114 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.25
# Mc/sec: 601.87
//
Query:       MMETSP1137-20121227|2275_1  [L=390]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.5e-97  325.5   0.1    3.2e-97  324.3   0.0    1.4  1  TIGR01967 DEAH_box_HrpA: ATP-dependent helicase HrpA
    2.1e-83  278.9   0.0    3.5e-83  278.1   0.0    1.3  1  TIGR01970 DEAH_box_HrpB: ATP-dependent helicase HrpB
    0.00017   19.5   0.0    0.00023   19.1   0.0    1.2  1  TIGR03499 FlhF: flagellar biosynthesis protein FlhF
    0.00075   16.4   0.0     0.0012   15.7   0.0    1.2  1  TIGR02788 VirB11: P-type DNA transfer ATPase VirB11
     0.0062   13.7   0.1      0.013   12.6   0.0    1.5  2  TIGR02782 TrbB_P: P-type conjugative transfer ATPase TrbB
  ------ inclusion threshold ------
      0.011   12.4   0.0      0.016   11.8   0.0    1.1  1  TIGR02759 TraD_Ftype: type IV conjugative transfer system coupling protein TraD
      0.011   12.7   0.6        1.3    5.9   0.0    3.0  4  TIGR01587 cas3_core: CRISPR-associated helicase Cas3
       0.02   12.2   0.0       0.03   11.5   0.0    1.2  1  TIGR03167 tRNA_sel_U_synt: tRNA 2-selenouridine synthase
      0.031   11.3   0.0      0.063   10.3   0.0    1.4  1  TIGR03819 heli_sec_ATPase: helicase/secretion neighborhood ATPase


Domain annotation for each model (and alignments):
>> TIGR01967  DEAH_box_HrpA: ATP-dependent helicase HrpA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  324.3   0.0    7e-100   3.2e-97      57     404 ..      38     373 ..      15     388 .. 0.89

  Alignments for each domain:
  == domain 1    score: 324.3 bits;  conditional E-value: 7e-100
   TIGR01967  57 vPeirypdnlPvsakrediakaiaenqvviiaGetGsGkttqlPkiclelGrGsrG.lightqPrrlaarsvaervaeelgtplGevvGykvrfedqvseetlvklltdGillaelqqdrflerydtiiideaherslnidfllGylkellkrrPdlkiiitsatidverfskhfnnaPiievsGrtyPvevryrPleeeqedeidldqlea.llaavdelveeekGdiliflpGereirdaaealrkr......klrhveilPlyarlsaeeqqrvfqph..sgrrivlatnvaetsltvPgiryvidtGtarisrysyrtkvqrlPiepisqasanqrkGrcGrvaeGicirlyse 404
                 + e+   ++lPv   re+i +a++e q ++i GetGsGkttq+P+   e G  ++G  ig tqPrr+aa sva+rva+e+g +lG+ vGy++rfed  se+t++k             d  l  y  + +deaher+l  d l+G+lk++ + rPd+k++++sat+d  +fs++f++aP+ ++ Gr yPv++ y           + d lea +++ ++  + +++Gdil+f++G+ ei  a e+l++r      k+++  +lP+ya l ++ q ++f+p     r++vlatn+aets+t+  i yvid+G  ++  y  rt +  l + p++++sanqr Gr Grv++G c rly  
  MMETSP1137-20121227|2275_1  38 LAEV--RKSLPVYLYREQIIEAVNEYQCLVIVGETGSGKTTQIPQYLHEAGYTKNGkKIGCTQPRRVAAMSVAKRVADEVGCKLGNEVGYAIRFEDCTSERTVLKK-----------PD--LASYSVMXLDEAHERTLHTDXLFGLLKDIARFRPDIKLLVSSATLDAAKFSEYFDDAPVFNIPGRRYPVDIMYTKA---P----EADYLEAaVVTVLQIHITQGPGDILVFFTGQDEIETALETLQHRtrgfgtKIAELIVLPIYANLPSDMQAKIFEPTpaGARKVVLATNIAETSITIDNIVYVIDPGFNKMNSYNPRTGMESLIVTPVAKSSANQRAGRAGRVSPGKCFRLYTK 373
                 3444..479**********************************************955********************************************9984...........33..899**********************************************************************632...2....345566515555566688999********************98632332246677799***************9752268***********************************************************************86 PP

>> TIGR01970  DEAH_box_HrpB: ATP-dependent helicase HrpB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  278.1   0.0   7.6e-86   3.5e-83       8     346 ..      52     383 ..      45     390 .] 0.92

  Alignments for each domain:
  == domain 1    score: 278.1 bits;  conditional E-value: 7.6e-86
   TIGR01970   8 PklrdalaakpqvvLeappGaGkstalPLalLdapwlig.rkiilLePrrlaaravaerlaselgeevGetvGyrvrlenkvsaktrlevvteGiltrmlqdDPeLegvdllifDefhersldaDlaLalaldvqsalreDLkilimsatLdgerlselldeapvveseGrsfPveirylplredealedrvaraveealaeesgsvLvfLPGqaeirrveeaLaerlda.....sevelcPLyGeleleaqdraikpaaaGrrkvvLatniaetsltieGvrvviDsglarvarfdpksGltrLetkrisqasadqraGraGrlepGvclrLwseeq.aerlaaa 346
                  ++ +a++  + +v+   +G+Gk+t++P  l +a+++ + +ki    Prr+aa +va+r+a+e+g + G++vGy +r+e ++s++t             +++ P L   +++ +De her l++D    l +d+   +r D+k+l+ satLd +++se +d+apv +  Gr +Pv+i y+++ e + le +v++ ++  + + +g++Lvf  Gq ei+ + e+L++r ++     +e+ ++P+y +l+ + q ++ +p++aG rkvvLatniaets+ti+ +  viD g+++  +++p++G+  L ++ ++++sa+qraGraGr+ pG c+rL+++    ++l+ +
  MMETSP1137-20121227|2275_1  52 EQIIEAVNEYQCLVIVGETGSGKTTQIPQYLHEAGYTKNgKKIGCTQPRRVAAMSVAKRVADEVGCKLGNEVGYAIRFEDCTSERT-------------VLKKPDLASYSVMXLDEAHERTLHTDXLFGLLKDIA-RFRPDIKLLVSSATLDAAKFSEYFDDAPVFNIPGRRYPVDIMYTKAPEADYLEAAVVTVLQIHITQGPGDILVFFTGQDEIETALETLQHRTRGfgtkiAELIVLPIYANLPSDMQAKIFEPTPAGARKVVLATNIAETSITIDNIVYVIDPGFNKMNSYNPRTGMESLIVTPVAKSSANQRAGRAGRVSPGKCFRLYTKWAyLNELEDN 383
                 678889999999***********************98761568899*************************************987.............5579***************************99996.68****************************************************************************************987544344678899*********************************************************************************************984314555555 PP

>> TIGR03499  FlhF: flagellar biosynthesis protein FlhF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.0     5e-07   0.00023     161     215 ..      25      78 ..       3     118 .. 0.82

  Alignments for each domain:
  == domain 1    score: 19.1 bits;  conditional E-value: 5e-07
   TIGR03499 161 leklkekedaeeareklreaLekklsvkkeedeilekggviaLvGptGvGKTTTl 215
                 + k+++k ++++  +++r+ L   l ++++  e+ ++ ++++ vG tG+GKTT +
  MMETSP1137-20121227|2275_1  25 IPKAPKKVSQKDSLAEVRKSLPVYL-YREQIIEAVNEYQCLVIVGETGSGKTTQI 78 
                 4456667777888999999999999.7777888889999**************76 PP

>> TIGR02788  VirB11: P-type DNA transfer ATPase VirB11
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   2.7e-06    0.0012     117     161 ..      31      78 ..      11      85 .. 0.68

  Alignments for each domain:
  == domain 1    score: 15.7 bits;  conditional E-value: 2.7e-06
   TIGR02788 117 lsdadeellellka...gdikeFlklaiaakkniiisGgtgsgKTTfl 161
                    +++ l e++k+     ++e +  a+++ + ++i+G tgsgKTT +
  MMETSP1137-20121227|2275_1  31 KVSQKDSLAEVRKSlpvYLYREQIIEAVNEYQCLVIVGETGSGKTTQI 78 
                 444444555555541113456778889*******************76 PP

>> TIGR02782  TrbB_P: P-type conjugative transfer ATPase TrbB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.6   0.0   2.9e-05     0.013     126     157 ..      51      82 ..      41      96 .. 0.85
   2 ?   -4.0   0.0       3.3   1.5e+03     197     210 ..     165     178 ..     158     183 .. 0.77

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 2.9e-05
   TIGR02782 126 advlreavaarknilvvGGtgsGkttLanall 157
                 +++++eav+  + +++vG tgsGktt +   l
  MMETSP1137-20121227|2275_1  51 REQIIEAVNEYQCLVIVGETGSGKTTQIPQYL 82 
                 57899*********************776555 PP

  == domain 2    score: -4.0 bits;  conditional E-value: 3.3
   TIGR02782 197 ltrLlkatlrlrPd 210
                 l  Llk   r+rPd
  MMETSP1137-20121227|2275_1 165 LFGLLKDIARFRPD 178
                 567999999****9 PP

>> TIGR02759  TraD_Ftype: type IV conjugative transfer system coupling protein TraD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   3.5e-05     0.016     151     198 ..      36      83 ..      20      93 .. 0.83

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 3.5e-05
   TIGR02759 151 kklkkskkasdikidglkllkkesEvqhllidGttgsGKsealrklle 198
                  +l + +k+ ++ +   +++++  E q l+i G tgsGK+  + + l+
  MMETSP1137-20121227|2275_1  36 DSLAEVRKSLPVYLYREQIIEAVNEYQCLVIVGETGSGKTTQIPQYLH 83 
                 35677777789999999***********************99988776 PP

>> TIGR01587  cas3_core: CRISPR-associated helicase Cas3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.0     0.014       6.5       1      51 [.      63     113 ..      63     145 .. 0.80
   2 ?    5.9   0.0    0.0029       1.3     124     174 ..     146     198 ..     135     206 .. 0.83
   3 ?   -1.5   0.0      0.49   2.2e+02     278     295 ..     300     317 ..     289     324 .. 0.83
   4 ?   -3.3   0.0       1.8   8.3e+02     306     319 ..     349     362 ..     340     366 .. 0.71

  Alignments for each domain:
  == domain 1    score: 3.6 bits;  conditional E-value: 0.014
   TIGR01587   1 llvieAPtGyGKteaallwalklikkqkadkvifalPtratanamyerlke 51 
                 +lvi+  tG+GKt+    ++ ++   +  +k+  + P r+ a  +++r+ +
  MMETSP1137-20121227|2275_1  63 CLVIVGETGSGKTTQIPQYLHEAGYTKNGKKIGCTQPRRVAAMSVAKRVAD 113
                 69999*********9999999987777788888888988888888888766 PP

  == domain 2    score: 5.9 bits;  conditional E-value: 0.0029
   TIGR01587 124 anSvliiDEvhayeeytkalllallevlk.dvdvkillmsAtlp.kllkeyle 174
                 ++Sv+ +DE+h     t  l+ +l ++++ + d+k+l+ sAtl    + ey+ 
  MMETSP1137-20121227|2275_1 146 SYSVMXLDEAHERTLHTDXLFGLLKDIARfRPDIKLLVSSATLDaAKFSEYFD 198
                 5899*******9888888877777777778999**********8766666665 PP

  == domain 3    score: -1.5 bits;  conditional E-value: 0.49
   TIGR01587 278 ekfvivaTQviEvslDis 295
                 +  v+ aT ++E s+ i+
  MMETSP1137-20121227|2275_1 300 ARKVVLATNIAETSITID 317
                 567999********9998 PP

  == domain 4    score: -3.3 bits;  conditional E-value: 1.8
   TIGR01587 306 idsLiQRlGRlaRy 319
                  +s  QR+GR  R 
  MMETSP1137-20121227|2275_1 349 KSSANQRAGRAGRV 362
                 566789****9885 PP

>> TIGR03167  tRNA_sel_U_synt: tRNA 2-selenouridine synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   6.7e-05      0.03     112     146 ..      50      80 ..      48      88 .. 0.70

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 6.7e-05
   TIGR03167 112 yRrlvldeleelaqelklvvlgGnTGsgKtelLek 146
                 yR+ +++++    +e++++v+ G+TGsgKt+ + +
  MMETSP1137-20121227|2275_1  50 YREQIIEAV----NEYQCLVIVGETGSGKTTQIPQ 80 
                 555555554....55899***********976544 PP

>> TIGR03819  heli_sec_ATPase: helicase/secretion neighborhood ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   0.00014     0.063     155     199 ..      39      82 ..      30      90 .. 0.69

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 0.00014
   TIGR03819 155 delvaagaiapevaelleaivaarlallvsGgtGsGkttLLsalL 199
                  e+ ++  +    ++++ea v++   l+++G tGsGktt +   L
  MMETSP1137-20121227|2275_1  39 AEVRKSLPVYLYREQIIEA-VNEYQCLVIVGETGSGKTTQIPQYL 82 
                 5555555555555666655.66777899***********876666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (390 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       238  (0.0580205); expected 82.0 (0.02)
Passed bias filter:                      231  (0.056314); expected 82.0 (0.02)
Passed Vit filter:                        65  (0.0158459); expected 4.1 (0.001)
Passed Fwd filter:                         9  (0.00219405); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.48u 0.26s 00:00:00.74 Elapsed: 00:00:00.56
# Mc/sec: 919.21
//
Query:       MMETSP1137-20121227|2276_1  [L=151]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (151 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       118  (0.0287665); expected 82.0 (0.02)
Passed bias filter:                      112  (0.0273038); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.18s 00:00:00.36 Elapsed: 00:00:00.67
# Mc/sec: 297.47
//
Query:       MMETSP1137-20121227|2277_1  [L=215]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0064   13.3   0.0     0.0072   13.1   0.0    1.1  1  TIGR02037 degP_htrA_DO: peptidase Do


Domain annotation for each model (and alignments):
>> TIGR02037  degP_htrA_DO: peptidase Do
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.1   0.0   1.7e-06    0.0072     259     323 ..      60     127 ..      51     179 .. 0.82

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 1.7e-06
   TIGR02037 259 kGalvaevlkgspAe.kaGlkaGDvilkvngkkiksa..adlreaigtlkpgkkvklkilRkgkekei 323
                 +  +v++v +g+ A+ +  l +GDv++ +ng+++++    +l e + + +p +++++++lR  +++++
  MMETSP1137-20121227|2277_1  60 SSNVVTRVERGGIAHqQKALSEGDVVIGFNGEPLTQRglPSLIESVLADNPATTLHVTVLRLKAKVSL 127
                 56789*******9972569**************987522578888888899999*****998776655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (215 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        71  (0.0173086); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.19u 0.13s 00:00:00.32 Elapsed: 00:00:00.32
# Mc/sec: 886.80
//
Query:       MMETSP1137-20121227|2278_1  [L=810]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (810 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       183  (0.0446124); expected 82.0 (0.02)
Passed bias filter:                       99  (0.0241346); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.51u 0.13s 00:00:00.64 Elapsed: 00:00:00.54
# Mc/sec: 1979.84
//
Query:       MMETSP1137-20121227|2279_1  [L=61]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        41  (0.00999512); expected 82.0 (0.02)
Passed bias filter:                       39  (0.00950756); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.16s 00:00:00.27 Elapsed: 00:00:00.24
# Mc/sec: 335.47
//
Query:       MMETSP1137-20121227|2281_1  [L=183]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (183 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        93  (0.0226719); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.14s 00:00:00.33 Elapsed: 00:00:00.32
# Mc/sec: 754.81
//
Query:       MMETSP1137-20121227|2282_1  [L=220]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (220 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        59  (0.0143832); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.13s 00:00:00.31 Elapsed: 00:00:00.32
# Mc/sec: 907.43
//
Query:       MMETSP1137-20121227|2283_1  [L=225]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.49    8.8   9.4       0.46    8.9   1.8    2.5  2  TIGR01409 TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence
       0.97    7.3   6.3      0.049   11.5   0.2    1.9  2  TIGR03741 PRTRC_E: PRTRC system protein E


Domain annotation for each model (and alignments):
>> TIGR01409  TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.4      0.01        21       9      17 ..      47      55 ..      43      63 .. 0.57
   2 ?    8.9   1.8   0.00022      0.46       1      27 [.      82     106 ..      82     109 .. 0.85

  Alignments for each domain:
  == domain 1    score: 3.6 bits;  conditional E-value: 0.01
   TIGR01409  9 aaaaagaaa 17
                 +aaa+aaa
  MMETSP1137-20121227|2283_1 47 LSAAAAAAA 55
                334444443 PP

  == domain 2    score: 8.9 bits;  conditional E-value: 0.00022
   TIGR01409   1 lsRRdFLkaaaaagaaaglglllpspa 27 
                 lsRR+ L ++a a+ a++++++  + +
  MMETSP1137-20121227|2283_1  82 LSRRSVLLGLAGATSALATAPM--GAS 106
                 7******************975..445 PP

>> TIGR03741  PRTRC_E: PRTRC system protein E
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.2   2.4e-05     0.049      15      73 ..      28      86 ..      23     109 .. 0.79
   2 ?   -2.6   0.7      0.58   1.2e+03     100     100 ..     136     136 ..     114     167 .. 0.59

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 2.4e-05
   TIGR03741 15 ltlslsaegdkltltvlPklksgakdaalakPlvlsgTpeELdegfaealkqyveares 73
                + ++l a+  ++ +tv+ +l++ a+ aal+ Pl +  T  E  +  a  l + + +r+s
  MMETSP1137-20121227|2283_1 28 VEVNLXASKSNMVVTVTLTLSAAAAAAALQMPLQMRTTSVEVQRPNACPLPEQILSRRS 86
                7899999999****************************999877666555555555555 PP

  == domain 2    score: -2.6 bits;  conditional E-value: 0.58
   TIGR03741 100 k 100
                 k
  MMETSP1137-20121227|2283_1 136 K 136
                 1 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (225 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       249  (0.0607021); expected 82.0 (0.02)
Passed bias filter:                      145  (0.0353486); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.24u 0.16s 00:00:00.40 Elapsed: 00:00:00.25
# Mc/sec: 1187.90
//
Query:       MMETSP1137-20121227|2284_1  [L=133]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (133 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        27  (0.00658216); expected 82.0 (0.02)
Passed bias filter:                       27  (0.00658216); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.10s 00:00:00.26 Elapsed: 00:00:00.41
# Mc/sec: 428.16
//
Query:       MMETSP1137-20121227|2285_1  [L=428]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0094   12.5   1.1      0.013   12.1   0.7    1.1  1  TIGR03145 cyt_nit_nrfE: cytochrome c nitrate reductase biogenesis protein NrfE


Domain annotation for each model (and alignments):
>> TIGR03145  cyt_nit_nrfE: cytochrome c nitrate reductase biogenesis protein NrfE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.1   0.7   3.1e-06     0.013     327     419 ..     322     415 ..     305     427 .. 0.84

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 3.1e-06
   TIGR03145 327 tlfalkanllesavrfgllskeallllanvlltvatvsvllGtfyPlifealnlGsisvGaPyfnsifvPlal.lllllmvlvlllkwkklakk 419
                  l   + +++e+ v f+l s  + ll + vl t+a++  ++G+f   +f+     s+ v   y n  ++ l++ l l+ m+   +l w  ++++
  MMETSP1137-20121227|2285_1 322 ELTECQIESTEKFVSFRLDSARNRLLQVDVLATIASAIFAFGAFTLAVFSVNLPTSLFVDPQYANGWLFELVVgLTLSCMISCFALLWFYFSSR 415
                 5555677889999************************************999999**********98888776366888999888888776665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (428 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       247  (0.0602145); expected 82.0 (0.02)
Passed bias filter:                      177  (0.0431497); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.19s 00:00:00.57 Elapsed: 00:00:00.53
# Mc/sec: 1065.87
//
Query:       MMETSP1137-20121227|2286_1  [L=777]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.022   12.7   0.2      0.039   11.9   0.1    1.4  1  TIGR03500 FliO_TIGR: flagellar biosynthetic protein FliO


Domain annotation for each model (and alignments):
>> TIGR03500  FliO_TIGR: flagellar biosynthetic protein FliO
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.1   9.4e-06     0.039       1      25 [.     729     751 ..     729     765 .. 0.80

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 9.4e-06
   TIGR03500   1 LllvLalilglawllkrfgsklkkp 25 
                 L+l+++l++gl+++l+r++  ++++
  MMETSP1137-20121227|2286_1 729 LILFVCLFCGLIYVLRRIL--KNHR 751
                 89****************9..3332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (777 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       332  (0.0809361); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.14s 00:00:00.63 Elapsed: 00:00:00.53
# Mc/sec: 1935.01
//
Query:       MMETSP1137-20121227|2287_1  [L=529]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.6e-09   31.8   4.1    5.2e-07   25.7   0.8    2.2  2  TIGR02917 PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein
      3e-07   28.1   5.1    0.00022   18.7   0.6    2.4  2  TIGR02521 type_IV_pilW: type IV pilus biogenesis/stability protein PilW
    2.3e-06   25.4   0.0    1.1e-05   23.2   0.0    1.9  1  TIGR02072 BioC: biotin biosynthesis protein BioC
    4.1e-05   20.9   0.0    7.4e-05   20.1   0.0    1.4  1  TIGR02021 BchM-ChlM: magnesium protoporphyrin O-methyltransferase
    0.00078   15.6   0.5    0.00078   15.6   0.3    1.6  2  TIGR03939 PGA_TPR_OMP: poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA
     0.0014   16.2   0.4       0.34    8.5   0.0    2.9  3  TIGR02552 LcrH_SycD: type III secretion low calcium response chaperone LcrH/SycD
     0.0019   15.3   0.0     0.0029   14.8   0.0    1.2  1  TIGR01934 MenG_MenH_UbiE: ubiquinone/menaquinone biosynthesis methyltransferase
  ------ inclusion threshold ------
      0.016   12.3   0.1      0.048   10.8   0.1    1.8  1  TIGR01983 UbiG: 3-demethylubiquinone-9 3-O-methyltransferase


Domain annotation for each model (and alignments):
>> TIGR02917  PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.7   0.8     1e-09   5.2e-07     727     830 ..      11     115 ..       7     165 .. 0.89
   2 !    6.7   0.0   0.00056      0.29     482     510 ..     223     251 ..     197     259 .. 0.63

  Alignments for each domain:
  == domain 1    score: 25.7 bits;  conditional E-value: 1e-09
   TIGR02917 727 kkalkrapssqtvikLaeallasgntaeAaktleawLkehpkdavlrtalAelyla.ekdedkAakhYqtvvkkapdnavvLNNLAwlalerkdpkAleyAekAl 830
                 ++ ++ a++++ + ++++ l a+g+ +eA   +   Lk+++      t+lA ++++   +e+ A++ Y+ v+++ p ++ +  NLA l++ r d  A + A + +
  MMETSP1137-20121227|2287_1  11 RACISNAATADDALQQGNRLYATGELEEARSAYMGCLKHDAGRTDCTTNLASVLVDiGGQEALAEQLYRRVLELDPTQIDAAYNLALLLQDRRDDDATREAARLY 115
                 67788999999999*************************************999974689999*************************99999999988887765 PP

  == domain 2    score: 6.7 bits;  conditional E-value: 0.00056
   TIGR02917 482 akAreafekALkiepdffpAlanLArldl 510
                 + A +a++ AL+++p++++A + LA l +
  MMETSP1137-20121227|2287_1 223 ENAANALRTALQLNPNDVQAEHMLASLLA 251
                 44555555555555555555555554433 PP

>> TIGR02521  type_IV_pilW: type IV pilus biogenesis/stability protein PilW
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.6   4.3e-07   0.00022      29     162 ..      18     154 ..      11     185 .. 0.82
   2 !   10.9   0.1    0.0001     0.052      48      81 ..     223     256 ..     219     260 .. 0.89

  Alignments for each domain:
  == domain 1    score: 18.7 bits;  conditional E-value: 4.3e-07
   TIGR02521  29 kaakirvqLaleYleqgdlekAkenlekAleldpkdadanlalAlyyqqlg.elekAeesfrkAltlkpnngdvlNNYGtFLcqqk...kyeeAeqqfeaAiedpkYeqparsyeNaglcalkagdte.kaekyltral 162
                 ++a+  +q + + ++ g+le+A+ +    l++d+   d    lA ++ ++g ++  Ae+ +r+ l+l+p + d+  N    L  ++    + eA + +e  +++   e++++++ N+++ + ++++t  +  k++++a+
  MMETSP1137-20121227|2287_1  18 ATADDALQQGNRLYATGELEEARSAYMGCLKHDAGRTDCTTNLASVLVDIGgQEALAEQLYRRVLELDPTQIDAAYNLALLLQDRRdddATREAARLYEGVVSAD--ETRWDAWANLATALSELKETPiRTIKAFEQAI 154
                 56777889999999**********************************99878889******************9999888777776655666666666666655..68899999998888777766424556666665 PP

  == domain 2    score: 10.9 bits;  conditional E-value: 0.0001
   TIGR02521  48 ekAkenlekAleldpkdadanlalAlyyqqlgel 81 
                 e+A ++l +Al+l+p+d +a ++lA ++ ++ e+
  MMETSP1137-20121227|2287_1 223 ENAANALRTALQLNPNDVQAEHMLASLLADQAEE 256
                 7899*********************999887765 PP

>> TIGR02072  BioC: biotin biosynthesis protein BioC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.2   0.0   2.2e-08   1.1e-05      36     133 ..     339     464 ..     326     469 .. 0.83

  Alignments for each domain:
  == domain 1    score: 23.2 bits;  conditional E-value: 2.2e-08
   TIGR02072  36 akvLdiGcGtGiltrallkrfpqaelialDiseemleqakkkls.......................nvqficgdi...eklplekks...fDlivSnlalQWlddlsevlaelarvlkpgGllafs 133
                 a++Ld+GcGtG+  ++l++ +  a l+ +D+se+ml +a                             ++ i+ d+   e+++l +     f+li+++ +l  + +l e+la++ ++++ +Gll+f+
  MMETSP1137-20121227|2287_1 339 ASALDAGCGTGLAGQHLRSVVAGA-LVGVDLSEKMLLRAAALRVgqnapgeaavaasadlhppgrpvYDKLIASDLltlERAQLLDGAlagFELITAADVLVYFGELXELLASFSELSTRDGLLVFT 464
                 689*************99999998.***********998866657899999999999999999999956666666511145555555578899******************************9997 PP

>> TIGR02021  BchM-ChlM: magnesium protoporphyrin O-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.0   1.4e-07   7.4e-05      59     152 ..     342     438 ..     336     457 .. 0.74

  Alignments for each domain:
  == domain 1    score: 20.1 bits;  conditional E-value: 1.4e-07
   TIGR02021  59 lDAGCGtGllsielAk..rGaivkavDiseklvelark.raekedeaenveFevndlesle.gkfDavvalDvlihYpaediakalerlasltkesvv 152
                 lDAGCGtGl   +l     Ga  ++vD+sek++  a   r  ++ + e    ++ dl+      +D ++a D l    a+ ++ al+ +   t + v+
  MMETSP1137-20121227|2287_1 342 LDAGCGTGLAGQHLRSvvAGA-LVGVDLSEKMLLRAAAlRVGQNAPGEAAVAASADLHPPGrPVYDKLIASDLLTLERAQLLDGALAGFELITAADVL 438
                 9************98722455.569******9876655166666665667778889998776889999999998877777777777666666555555 PP

>> TIGR03939  PGA_TPR_OMP: poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.3   1.5e-06   0.00078     104     168 ..      73     137 ..      69     163 .. 0.89
   2 ?   -2.5   0.4      0.45   2.3e+02     447     477 ..     224     254 ..     222     257 .. 0.70

  Alignments for each domain:
  == domain 1    score: 15.6 bits;  conditional E-value: 1.5e-06
   TIGR03939 104 kAlelyrkllqrdPknpdlllGlaltladagkdeeAlkalkelkerfpsdaerlealaYvlraae 168
                  A++lyr++l+ dP++ d+   lal l d ++d+   +a++ ++   ++d+ r  a+a +++a+ 
  MMETSP1137-20121227|2287_1  73 LAEQLYRRVLELDPTQIDAAYNLALLLQDRRDDDATREAARLYEGVVSADETRWDAWANLATALS 137
                 699***********************************************999999998877654 PP

  == domain 2    score: -2.5 bits;  conditional E-value: 0.45
   TIGR03939 447 rAeqllkkaeslepdslsaergqaetaldlq 477
                 +A+++l+ a +l+p++++ae+ +a +  d+ 
  MMETSP1137-20121227|2287_1 224 NAANALRTALQLNPNDVQAEHMLASLLADQA 254
                 5777788888888888888877776665554 PP

>> TIGR02552  LcrH_SycD: type III secretion low calcium response chaperone LcrH/SycD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.7   0.0    0.0011      0.58      24      93 ..      26      96 ..      16     105 .. 0.84
   2 !    8.5   0.0   0.00067      0.34       7      76 ..      78     151 ..      73     163 .. 0.79
   3 ?   -1.9   0.0       1.1   5.4e+02     103     120 ..     223     240 ..     218     249 .. 0.70

  Alignments for each domain:
  == domain 1    score: 7.7 bits;  conditional E-value: 0.0011
   TIGR02552 24 lAYnlyqqgkyeeAeklFqlLaaldpteakywlgLaaclqalk.eyeeAiaaYalaaaldlddprpvyhaa 93
                ++ +ly++g++eeA+ ++      d+ + + +  La++l   + + + A + Y + + ld+ + ++ y +a
  MMETSP1137-20121227|2287_1 26 QGNRLYATGELEEARSAYMGCLKHDAGRTDCTTNLASVLVDIGgQEALAEQLYRRVLELDPTQIDAAYNLA 96
                56689999999999999999999999999999999999988752566799999999999999988888766 PP

  == domain 2    score: 8.5 bits;  conditional E-value: 0.00067
   TIGR02552   7 lksllgldeeqleaiYalAYnlyqqgk...yeeAeklFqlLaaldpteakywlgLaaclqalkey.eeAiaaYa 76 
                 ++ +l+ld+ q++a Y+lA  l  + +    +eA++l++  + +d t+++ w+ La +l +lke   + i+a++
  MMETSP1137-20121227|2287_1  78 YRRVLELDPTQIDAAYNLALLLQDRRDddaTREAARLYEGVVSADETRWDAWANLATALSELKETpIRTIKAFE 151
                 778999999999999999988776654333689**************************999985135555555 PP

  == domain 3    score: -1.9 bits;  conditional E-value: 1.1
   TIGR02552 103 eeAlkaLklaieiaeeke 120
                 e+A +aL++a+++  ++ 
  MMETSP1137-20121227|2287_1 223 ENAANALRTALQLNPNDV 240
                 577777777777776654 PP

>> TIGR01934  MenG_MenH_UbiE: ubiquinone/menaquinone biosynthesis methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   5.7e-06    0.0029       1      79 [.     297     377 ..     297     396 .. 0.82

  Alignments for each domain:
  == domain 1    score: 14.8 bits;  conditional E-value: 5.7e-06
   TIGR01934   1 vqevFdeiakkYDllNdllSlGldrlWkkkavkkieee..keekvlDvatGtGdlaielakkaeakvtgvDlseemLevak 79 
                 vq++Fd+ a+++D+    l + + rl  ++a + + e+    +  lD  +GtG    +l   ++  ++gvDlse+mL  a+
  MMETSP1137-20121227|2287_1 297 VQTLFDDFADTFDNKLASLQYVVPRLLGETARSLAIERghLFASALDAGCGTGLAGQHLRSVVAGALVGVDLSEKMLLRAA 377
                 688999999999988888888888998888888887775566899********999999999999***********96554 PP

>> TIGR01983  UbiG: 3-demethylubiquinone-9 3-O-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.1   9.4e-05     0.048      51      89 ..     339     378 ..     310     467 .. 0.84

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 9.4e-05
   TIGR01983  51 lkvlDvGcGgGllseslarlgae.vtgiDlseelievAkl 89 
                  + lD GcG Gl  + l    a   +g+Dlse+++  A +
  MMETSP1137-20121227|2287_1 339 ASALDAGCGTGLAGQHLRSVVAGaLVGVDLSEKMLLRAAA 378
                 4679*************88777669********9876654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (529 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       108  (0.0263286); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         8  (0.00195027); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.43u 0.15s 00:00:00.57 Elapsed: 00:00:00.44
# Mc/sec: 1586.87
//
Query:       MMETSP1137-20121227|2288_1  [L=211]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (211 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       301  (0.0733788); expected 82.0 (0.02)
Passed bias filter:                      175  (0.0426621); expected 82.0 (0.02)
Passed Vit filter:                        18  (0.0043881); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.17s 00:00:00.40 Elapsed: 00:00:00.39
# Mc/sec: 714.09
//
Query:       MMETSP1137-20121227|2289_1  [L=278]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (278 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        57  (0.0138957); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.16s 00:00:00.40 Elapsed: 00:00:00.32
# Mc/sec: 1146.66
//
Query:       MMETSP1137-20121227|2290_1  [L=361]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (361 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       121  (0.0294978); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.11s 00:00:00.39 Elapsed: 00:00:00.39
# Mc/sec: 1221.75
//
Query:       MMETSP1137-20121227|2291_1  [L=80]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (80 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        44  (0.0107265); expected 82.0 (0.02)
Passed bias filter:                       38  (0.00926377); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.13s 00:00:00.25 Elapsed: 00:00:00.33
# Mc/sec: 319.97
//
Query:       MMETSP1137-20121227|2292_1  [L=48]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (48 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        55  (0.0134081); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.17s 00:00:00.29 Elapsed: 00:00:00.39
# Mc/sec: 162.45
//
Query:       MMETSP1137-20121227|2293_1  [L=342]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (342 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        94  (0.0229157); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.16s 00:00:00.42 Elapsed: 00:00:00.43
# Mc/sec: 1049.77
//
Query:       MMETSP1137-20121227|2294_1  [L=451]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.9e-12   42.9   0.0    3.7e-12   42.6   0.0    1.0  1  TIGR04121 DEXH_lig_assoc: DEXH box helicase, DNA ligase-associated
    6.5e-12   42.5   0.0    9.6e-12   41.9   0.0    1.2  1  TIGR01389 recQ: ATP-dependent DNA helicase RecQ
    4.7e-09   33.3   0.2    8.1e-09   32.5   0.1    1.3  1  TIGR00643 recG: ATP-dependent DNA helicase RecG
      7e-09   33.1   0.1    9.5e-09   32.6   0.0    1.2  1  TIGR01587 cas3_core: CRISPR-associated helicase Cas3
    4.6e-07   26.8   0.0    9.1e-07   25.8   0.0    1.5  1  TIGR00614 recQ_fam: ATP-dependent DNA helicase, RecQ family


Domain annotation for each model (and alignments):
>> TIGR04121  DEXH_lig_assoc: DEXH box helicase, DNA ligase-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.6   0.0   4.5e-15   3.7e-12      15     343 ..      80     398 ..      73     430 .. 0.76

  Alignments for each domain:
  == domain 1    score: 42.6 bits;  conditional E-value: 4.5e-15
   TIGR04121  15 rafQkevleaaeegesglliapTGaGKTlavflpsliela...akekpkkglkvlyitPLkaLakdieraleapieelgleirvelrtGDtssserarqrkkppdiLltTpEslaLllsskdaeklfkdlravvvDElHeLlg.skRGdlleLaLarLrrlapelrvvglsATvgn.leeaaevllgeekeekaklvkakekkalevesllpeeeeklPwaGhlglkaleevleeik...karttlvFtNtRsqaEllfqaLleaneelaleialhHgsldkeqRekveaalkagklravvcTssLdLGvDfgdvdlviqvGspkgvaRllQRiGRs 343
                  + Q   l ++ ++++ l +   G+GKT   +l++l +++     +k ++g ++l + P + Lak+i++ + ++ + l  +  + ++t    +++ +r    + +i++ Tp ++  l+  +  ++  ++l++ v+DE  e+l     Gd+++      +rl ++++++  sAT  + ++++a+ ++  ++ ++ + +++      + + +++++++++ ++   g+k  e+ l+ i    +  ++++F NtR   E + + Ll+  +     ++  Hg +++++R+kv + ++ag  r++++T  L       + d+ ++ G+       l R+GR+
  MMETSP1137-20121227|2294_1  80 SKIQAFSLPKIWSKRDLLAQSHNGTGKTACFVLGMLKAVTpaaIGQKAEQGPQALCLCPTRELAKQISEEVFKMGKYLLDSAAIVVKTI-LREERYERGAVMQEQIIVGTPGKVWTLINMRVMDT--SKLKIFVLDEADEMLLlGGLGDMTK---RIRQRLPKNVQTLFFSATWTDsIKKFAKQMSAVSN-RDWSQIEV------KRNYIFNDQVRQVYYQSN-GIKEKEDFLTDILnvvTVGQCIIFANTRDAVEKVGKRLLDGGHS----VSQLHGRMEESARDKVLNDFRAGLSRFLITTNVLPAVTLVIQYDMPVKKGGQCDPETYLHRVGRT 398
                 56677777788889999999****************99998776788889****************************99999999995.445566777888899*************9988776..79**********9765145566555...334567789*********87624555555555555.44444444......667788888888877654.454444444433301145679*****************988777....7888***************************9885444444445555555555555666666665 PP

>> TIGR01389  recQ: ATP-dependent DNA helicase RecQ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.9   0.0   1.2e-14   9.6e-12     191     338 ..     274     422 ..     194     437 .. 0.79

  Alignments for each domain:
  == domain 1    score: 41.9 bits;  conditional E-value: 1.2e-14
   TIGR01389 191 efvssfdRenlafsvvkkenkkkqlleylkkereksGiiYassRkkveelaeaLeskgiealaYhaGlskkvRaeaqekFleddvkvvvatvaFGmGidksdvRfvihldlPk......nlesyyqeaGRaGRDGlkaeailly.seaDlallkr 338
                 +++   + ++++++ +  ++k+++l++ l+  +    ii+a++R+ ve++ ++L   g ++ + h+ ++++ R++ +++F     + ++ t+        + v  vi +d+P       + e+y   +GR GR G++  a+ +  s+a+l+++k+
  MMETSP1137-20121227|2294_1 274 NYIFNDQVRQVYYQSNGIKEKEDFLTDILNVVTVGQCIIFANTRDAVEKVGKRLLDGGHSVSQLHGRMEESARDKVLNDFRAGLSRFLITTNVL------PAVTLVIQYDMPVkkggqcDPETYLHRVGRTGRFGRPGCALNMIaSKAELNVMKQ 422
                 33333344678899999999************************************************************************86......99**********6233333579***************988755415566666654 PP

>> TIGR00643  recG: ATP-dependent DNA helicase RecG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.5   0.1   9.9e-12   8.1e-09     260     518 ..      97     367 ..      92     372 .. 0.81

  Alignments for each domain:
  == domain 1    score: 32.5 bits;  conditional E-value: 9.9e-12
   TIGR00643 260 LlqGdVGsGKTvVavlallavi.........esGyqvalmaPTeiLAeQhyeklrelleplgievalLtgslkkkkkkelleeiasGeielvvGT....hallqekv.efkeLalviiDEQhrF....GveQRkkLrekgkek..iaphvLvmsATPIPRtlAltvygdldvsiidelPlGrkpittklikekekdkvyevveeeikkgrqvyvvyplieeseklelkaaealleelkkaf..pklnvallhgrlksdekeevleeFrekevdiLvaTtvi 518
                 L q   G+GKT   vl +l+++         e+G q++ + PT  LA+Q  e++ ++ +   ++ a ++ ++  ++ ++ + ++   + +++vGT     +l++ +v + ++L++ + DE        G      ++++ +++  +++++L++sAT    t  + ++++ ++s + +    + +++ + i++++  +vy   +   +k+     +  ++   + +  ++  + +e++ k +  +  +v  lhgr+++  +++vl++Fr++    L++T+v+
  MMETSP1137-20121227|2294_1  97 LAQSHNGTGKTACFVLGMLKAVtpaaigqkaEQGPQALCLCPTRELAKQISEEVFKMGKY-LLDSAAIVVKTILREERYERGAVM--QEQIIVGTpgkvWTLINMRVmDTSKLKIFVLDEADEMlllgG---LGDMTKRIRQRlpKNVQTLFFSATW---TDSIKKFAK-QMSAVSNRDWSQIEVKRNYIFNDQVRQVYYQSNGIKEKEDFLTDILNVVTVGQCIIFANTRDAVEKVGKRLldGGHSVSQLHGRMEESARDKVLNDFRAGLSRFLITTNVL 367
                 5577789**********99987444444444689********************998775.466666666666666666666666..78999**94433468876654899*********998632322...2334444433344789********5...8899***98.89***************************98777666666777799999999999999999999999998878899********************************996 PP

>> TIGR01587  cas3_core: CRISPR-associated helicase Cas3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.6   0.0   1.2e-11   9.5e-09     149     321 ..     231     403 ..     160     427 .. 0.79

  Alignments for each domain:
  == domain 1    score: 32.6 bits;  conditional E-value: 1.2e-11
   TIGR01587 149 evlkdvdvkillmsAtlpkllkeylekielveenealdlke......ekrfenqrisliekdkleeisslerllealkkekkvliivNtVdrAqelyqklkekapeeeiiLlHsrftekdrekkEaellkelkknekfvivaTQviE.vslDisvdvlite..lapidsLiQRlGRlaRygr 321
                      ++v+ l  sAt  + +k++++++  v ++   + +       +++    ++  + + ++e++ +l+++l+ +   ++ +i++Nt d   ++ ++l + ++   +  lH+r+ e+ r k     l++++   ++++++T v   v l i  d+ +     + ++    R+GR  R+gr
  MMETSP1137-20121227|2294_1 231 RQRLPKNVQTLFFSATWTDSIKKFAKQMSAVSNRDWSQIEVkrnyifNDQV--RQVYYQSNGIKEKEDFLTDILNVV-TVGQCIIFANTRDAVEKVGKRLLDGGHS--VSQLHGRMEESARDKV----LNDFRAGLSRFLITTNVLPaVTLVIQYDMPVKKggQCDPETYLHRVGRTGRFGR 403
                 444468999**********************88877665544444332222..3345678889999*****988766.5678999****999999**********8..99*********99776....****************985267888888877643389999999********998 PP

>> TIGR00614  recQ_fam: ATP-dependent DNA helicase, RecQ family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.8   0.0   1.1e-09   9.1e-07     156     341 ..     230     423 ..     198     438 .. 0.75

  Alignments for each domain:
  == domain 1    score: 25.8 bits;  conditional E-value: 1.1e-09
   TIGR00614 156 LkqklP.svpviaLtatasssvreDilklLklkkpqvtitsfdRpnl........kye...veekkskiledllkfivkefkgksGiiYClsrkkveqvaaeLqkkglaaaaYhagleesarkevqkkflrdeiqvvvatvafGmGinkpdvRfvihyslpk......siesYYqesGRaGRDglksecvlfy.apaDvallrrl 341
                 ++q+lP +v  +  +at ++s+++ + ++  +++         R+ +        +y+   ++ek+ ++l+d+l+ ++    g+  ii+ ++r  ve+v ++L   g +    h  +eesar++v ++f +   + ++ t         p v  vi y++p       + e+Y   +GR GR g + +++ +  ++a++++++++
  MMETSP1137-20121227|2294_1 230 IRQRLPkNVQTLFFSATWTDSIKKFAKQMSAVSNRDWSQIEVKRNYIfndqvrqvYYQsngIKEKE-DFLTDILNVVT---VGQC-IIFANTRDAVEKVGKRLLDGGHSVSQLHGRMEESARDKVLNDFRAGLSRFLITTNVL------PAVTLVIQYDMPVkkggqcDPETYLHRVGRTGRFGRPGCALNMIaSKAELNVMKQI 423
                 677777447777788888888888777777777766555555555441100000033311122232.55555555555...6777.********************************************9999999999765......99*********95223333579*************999887554145667766665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (451 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       131  (0.0319356); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.39u 0.16s 00:00:00.55 Elapsed: 00:00:00.59
# Mc/sec: 1008.93
//
Query:       MMETSP1137-20121227|2296_1  [L=493]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (493 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       105  (0.0255973); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.16s 00:00:00.51 Elapsed: 00:00:00.52
# Mc/sec: 1251.36
//
Query:       MMETSP1137-20121227|2297_1  [L=242]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (242 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       156  (0.0380302); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.11s 00:00:00.33 Elapsed: 00:00:00.34
# Mc/sec: 939.45
//
Query:       MMETSP1137-20121227|2298_1  [L=353]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (353 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        59  (0.0143832); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.14s 00:00:00.39 Elapsed: 00:00:00.35
# Mc/sec: 1331.20
//
Query:       MMETSP1137-20121227|2299_1  [L=134]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (134 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        46  (0.011214); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.15s 00:00:00.30 Elapsed: 00:00:00.41
# Mc/sec: 431.38
//
Query:       MMETSP1137-20121227|2300_1  [L=186]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.014   12.8   0.0      0.021   12.2   0.0    1.2  1  TIGR01840 esterase_phb: esterase, PHB depolymerase family


Domain annotation for each model (and alignments):
>> TIGR01840  esterase_phb: esterase, PHB depolymerase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0     5e-06     0.021      12      55 ..      81     125 ..      75     131 .. 0.85

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 5e-06
   TIGR01840  12 kralvlalHGCgQtasasvidkg.wkaaAdkYgfvvvaPevtssn 55 
                 +r l++  HGC+Qt       k   +aaA + +++ v P+ ++++
  MMETSP1137-20121227|2300_1  81 RRLLLIRCHGCEQTTEFALPPKPpARAAASHQKMIAVTPTSKKKV 125
                 5778999*******9998877767999************988765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (186 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        76  (0.0185275); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.18u 0.14s 00:00:00.32 Elapsed: 00:00:00.50
# Mc/sec: 491.00
//
Query:       MMETSP1137-20121227|2301_1  [L=211]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00085   16.5   0.4     0.0011   16.1   0.3    1.1  1  TIGR03025 EPS_sugtrans: exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase


Domain annotation for each model (and alignments):
>> TIGR03025  EPS_sugtrans: exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.3   2.7e-07    0.0011      18     119 ..      98     196 ..      76     207 .. 0.66

  Alignments for each domain:
  == domain 1    score: 16.1 bits;  conditional E-value: 2.7e-07
   TIGR03025  18 lslkllleeeesslllllllllllilfala...glyrskrrrslleelarvllalllllllllalafllkslslsrlvlllalllalllllllrlllrrllrrlr 119
                 +s+++ +e +  ++++ ++l+++l +   a   g+y+   r s l+ l++++ a+++++l+ ++l  l++++  +  +++++l+++++ll  +r++   +++r++
  MMETSP1137-20121227|2301_1  98 RSSHSSDEGSLLATAAPFMLAWAL-A---ApplGAYK--DRTSALQALRQIMPAVVAAVLFGCTLRGLTQDHMPAPPFWVVSLVANTILLGGWRMIYFSVVERTS 196
                 222222222222222222222222.2...23236777..888999*************************66666689999******************999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (211 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       132  (0.0321794); expected 82.0 (0.02)
Passed bias filter:                      100  (0.0243784); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.22u 0.19s 00:00:00.41 Elapsed: 00:00:00.47
# Mc/sec: 592.55
//
Query:       MMETSP1137-20121227|2302_1  [L=188]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (188 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       122  (0.0297416); expected 82.0 (0.02)
Passed bias filter:                      107  (0.0260848); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.17s 00:00:00.36 Elapsed: 00:00:00.50
# Mc/sec: 496.28
//
Query:       MMETSP1137-20121227|2303_1  [L=511]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (511 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        90  (0.0219405); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.13s 00:00:00.46 Elapsed: 00:00:00.47
# Mc/sec: 1435.03
//
Query:       MMETSP1137-20121227|2304_1  [L=161]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0093   14.3   1.1      0.014   13.7   0.8    1.2  1  TIGR02523 type_IV_pilV: type IV pilus modification protein PilV
  ------ inclusion threshold ------
      0.013   11.1   0.0      0.015   10.8   0.0    1.1  1  TIGR01341 aconitase_1: aconitate hydratase 1


Domain annotation for each model (and alignments):
>> TIGR02523  type_IV_pilV: type IV pilus modification protein PilV
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   0.8   6.9e-06     0.014      14     126 ..      35     146 ..      34     153 .. 0.80

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 6.9e-06
   TIGR02523  14 LvlaiGvLglaalqlkavratksasertiasqlaynlldrmranpkalsdkkyktatalastklsakasdcatsaateanaaaeadlkewlselknalpdgagsikadsdcdn 126
                 L+l+ G+Lg + ++l  +++   + +++  s +a+  +  m ++++  + ++  t +++++  +++ a++++ +  t+a +aae  lk   +  +++ p g+  +k ++  d 
  MMETSP1137-20121227|2304_1  35 LLLSAGLLGSLVVLLGLLAMYSISINTKPKSKYARKAASDMDSSRTRNGGAASATLNGAKNGAAKNRAKAANHDGRTAA-DAAEVSLKAVDETKEATSPPGTVALKIQWSSDK 146
                 899***********99999999999999999999999999999999988888888887776666666666666665555.555688998888888888988888888877764 PP

>> TIGR01341  aconitase_1: aconitate hydratase 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   7.2e-06     0.015     405     460 ..      12      67 ..       1      76 [. 0.89

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 7.2e-06
   TIGR01341 405 aelkdgavviaaitsctntsnpsvllgagllakkavelGlkvkpyvktslapGskv 460
                  +++d++ + a  ts + +s p +ll+agll    v lGl     +   + p sk 
  MMETSP1137-20121227|2304_1  12 RRMQDSSSIFAERTSASTASSPELLLSAGLLGSLVVLLGLLAMYSISINTKPKSKY 67 
                 679999999*******************************9999999999998875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (161 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       136  (0.0331546); expected 82.0 (0.02)
Passed bias filter:                       96  (0.0234032); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.19u 0.16s 00:00:00.35 Elapsed: 00:00:00.24
# Mc/sec: 885.43
//
Query:       MMETSP1137-20121227|2305_1  [L=384]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.2e-07   28.0   0.6      5e-07   27.3   0.0    1.5  2  TIGR02280 PaaB1: phenylacetate degradation probable enoyl-CoA hydratase PaaB
    4.4e-07   26.4   0.0    6.1e-07   25.9   0.0    1.1  1  TIGR02440 FadJ: fatty oxidation complex, alpha subunit FadJ
    9.3e-05   18.5   0.0    0.00013   18.0   0.0    1.1  1  TIGR02441 fa_ox_alpha_mit: fatty acid oxidation complex, alpha subunit, mitochondrial
     0.0034   13.6   0.0     0.0045   13.2   0.0    1.1  1  TIGR02437 FadB: fatty oxidation complex, alpha subunit FadB
     0.0079   13.3   0.1      0.014   12.6   0.0    1.3  1  TIGR03189 dienoyl_CoA_hyt: cyclohexa-1,5-dienecarbonyl-CoA hydratase


Domain annotation for each model (and alignments):
>> TIGR02280  PaaB1: phenylacetate degradation probable enoyl-CoA hydratase PaaB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.3   0.0   6.1e-10     5e-07      81     199 ..     113     230 ..      91     238 .. 0.90
   2 ?   -2.6   0.1      0.85   6.9e+02     201     249 ..     298     347 ..     285     350 .. 0.67

  Alignments for each domain:
  == domain 1    score: 27.3 bits;  conditional E-value: 6.1e-10
   TIGR02280  81 fynplvrrlaalpkpvvvavnGvaaGaGanlalagdivlaaesakfiqafaklGlipdsGGtwllprlvGrarakglallgekldaetaaewGliwqvvddealadevqalaahlakqp 199
                 +   l++ la+  +p v av+G+ +G    la  +   +a+e +++      +G++p+s  t+ l rl G a    lal+g  l  ++ +  Gl  +  + ++l +  q+l++++  +p
  MMETSP1137-20121227|2305_1 113 QVANLMQTLASGTLPAVFAVDGILTGCAVGLAAHSRFFVATERTRLALPGPAFGFVPESFATYQLSRLPG-ALGIYLALTGAALTGQELRRLGLATHYTESQTLRHFEQTLSEQVRIGP 230
                 55679999***********************************************************999.67889*********************9999999999999998887776 PP

  == domain 2    score: -2.6 bits;  conditional E-value: 0.85
   TIGR02280 201 rglalikral.qaaetnsldtqldlerdlqrelGrsadyaeGvaafldkr 249
                  +l l+  +  qa   ++ +  l+ e +l   l ++ad++ G + +++ r
  MMETSP1137-20121227|2305_1 298 LALQLTFSTXkQAQREKNWSRCLQEEAELCGALMQTADFKAGFKQLMAAR 347
                 55555544441455567788888888888889999999999988877766 PP

>> TIGR02440  FadJ: fatty oxidation complex, alpha subunit FadJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.9   0.0   7.4e-10   6.1e-07      62     182 ..      92     208 ..      83     236 .. 0.83

  Alignments for each domain:
  == domain 1    score: 25.9 bits;  conditional E-value: 7.4e-10
   TIGR02440  62 agadismlaacktadeakalaqkgqellaelealpikvvaaihgaclggglelalachsrvcsdddktvlglpevqlgllpgsggtqrlprlvgvskaldmiltgkqlrakqalklglvdd 182
                 ag d++ l    + + ak + q+  +l++ l++ +++ v a+ g   g    + la hsr     ++t+l lp   +g++p s  t +l rl g    + + ltg  l  ++ ++lgl  +
  MMETSP1137-20121227|2305_1  92 AGCDLAQLVDEPSVNRAKYF-QQVANLMQTLASGTLPAVFAVDGILTGC--AVGLAAHSRFFVATERTRLALPGPAFGFVPESFATYQLSRLPGA-LGIYLALTGAALTGQELRRLGLATH 208
                 78888777777777777765.677899*****************87655..56789******************************999999884.4567788888888888888888765 PP

>> TIGR02441  fa_ox_alpha_mit: fatty acid oxidation complex, alpha subunit, mitochondrial
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.0   1.6e-07   0.00013      74     193 ..      92     207 ..      84     214 .. 0.81

  Alignments for each domain:
  == domain 1    score: 18.0 bits;  conditional E-value: 1.6e-07
   TIGR02441  74 aGadidmlkacktaeevtqlsreaqklleklekskkpivaaisGsclGGGlelalachyriatkdkktllglpevllGllpGaGgtqrlpklvsvpaaldleltGkkikadrakklGlvd 193
                 aG d+  l  + +++ ++ + +   +l++ l   + p v a+ G   G    + la h r  +  ++t l+lp   +G +p + +t +l +l +    + l ltG  +  +  ++lGl  
  MMETSP1137-20121227|2305_1  92 AGCDLAQLVDEPSVNRAKYFQQV-ANLMQTLASGTLPAVFAVDGILTGC--AVGLAAHSRFFVATERTRLALPGPAFGFVPESFATYQLSRLPGALG-IYLALTGAALTGQELRRLGLAT 207
                 78888887777777777766555.567899999***********87765..5677788888888899********************9999988654.5689999999999999999865 PP

>> TIGR02437  FadB: fatty oxidation complex, alpha subunit FadB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   0.0   5.5e-06    0.0045      62     160 ..      88     183 ..      82     219 .. 0.76

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 5.5e-06
   TIGR02437  62 dafivGaditeflelfakpeeellqwleeansvfnkledlpvptvaavkGfalGGGlevvlatdfriadktakiGlpetklGilpGfGGtvrlprliGa 160
                  +   G d++++++    p  +  ++ ++  ++++ l   ++p+v av+G+  G  + +   + f +a++ +++ lp   +G +p    t +l rl Ga
  MMETSP1137-20121227|2305_1  88 SVEFAGCDLAQLVDE---PSVNRAKYFQQVANLMQTLASGTLPAVFAVDGILTGCAVGLAAHSRFFVATERTRLALPGPAFGFVPESFATYQLSRLPGA 183
                 555566666666554...555555667777789999**************99877777777777889******************98888877777665 PP

>> TIGR03189  dienoyl_CoA_hyt: cyclohexa-1,5-dienecarbonyl-CoA hydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.6   0.0   1.7e-05     0.014      72     189 ..     108     222 ..      92     229 .. 0.87

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 1.7e-05
   TIGR03189  72 aamlkslhklviemldspvpilvavrgqclggglevaaagnllfaapdaklgqpeiklgvfapaascllpervgkvaaedllysgrsidgaegariglvdavaedpeaaalayfdehl 189
                 a+ ++ + +l++ +    +p + av g   g  + +aa  +++ a+  ++l  p   +g    + +     r++ +    l  +g +++g+e  r+gl++  +   e+ +l++f++ l
  MMETSP1137-20121227|2305_1 108 AKYFQQVANLMQTLASGTLPAVFAVDGILTGCAVGLAAHSRFFVATERTRLALPGPAFGFVPESFATYQLSRLPGALGIYLALTGAALTGQELRRLGLATHYT---ESQTLRHFEQTL 222
                 67778889999999999************9999999999999999999***********888888888999***************************98765...456677777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (384 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        95  (0.0231594); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.33u 0.14s 00:00:00.47 Elapsed: 00:00:00.47
# Mc/sec: 1078.38
//
Query:       MMETSP1137-20121227|2306_1  [L=448]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.8e-34  116.1   0.3    3.8e-34  115.7   0.2    1.2  1  TIGR00231 small_GTP: small GTP-binding protein domain
    6.9e-06   23.1   1.1    2.5e-05   21.3   0.4    2.1  2  TIGR03594 GTPase_EngA: ribosome-associated GTPase EngA
    0.00013   19.1   0.3    0.00025   18.1   0.2    1.4  1  TIGR00450 mnmE_trmE_thdF: tRNA modification GTPase TrmE
    0.00025   17.9   0.3    0.00072   16.4   0.2    1.7  1  TIGR03156 GTP_HflX: GTP-binding protein HflX
    0.00089   16.3   0.4       0.17    8.8   0.0    2.1  2  TIGR03597 GTPase_YqeH: ribosome biogenesis GTPase YqeH
     0.0018   15.7   0.2       0.43    7.9   0.0    2.2  2  TIGR00157 TIGR00157: ribosome small subunit-dependent GTPase A


Domain annotation for each model (and alignments):
>> TIGR00231  small_GTP: small GTP-binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  115.7   0.2   5.6e-37   3.8e-34       3     162 ..       8     165 ..       6     167 .. 0.96

  Alignments for each domain:
  == domain 1    score: 115.7 bits;  conditional E-value: 5.6e-37
   TIGR00231   3 eikivivGhvdvGKstLlnsllknkisiteskpgvtrdyvteqieedGktykvnllDTaGqedfdairrlyvreverslevvdivilvldveeglekqtkeiiheakkkgvpiilvvnKiDlkd..dlktkvkslfaklnaepiielsaetgknidklfklv 162
                  +k+v++G+++vGKs+Ll ++++++   ++  ++++ d+  + i+ +Gkt+k++++DTaGqe+f+ i++ y+r + +++ v+d +   +++e ++  +  ei ++a  ++v  +lv+nK Dl +  +++t+ +++fa++   p+ e+sa++ +n++++f ++
  MMETSP1137-20121227|2306_1   8 VFKLVLIGDSGVGKSCLLLRFADDT-YTESHISTIGVDFKIRTIQLEGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDTTDS-ETFEHVK-TWLHEIDRYAS-ENVNKLLVGNKSDLSSkrQVETEAAKEFANSVSIPFLETSAKNATNVEDAFMTM 165
                 689**********************.5555559******************************************************.******9.***********.*************************************************99765 PP

>> TIGR03594  GTPase_EngA: ribosome-associated GTPase EngA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3   0.4   3.6e-08   2.5e-05     173     361 ..       6     185 ..       1     199 [. 0.75
   2 ?   -2.4   0.0      0.57   3.9e+02      13      54 ..     318     359 ..     317     360 .. 0.84

  Alignments for each domain:
  == domain 1    score: 21.3 bits;  conditional E-value: 3.6e-08
   TIGR03594 173 eepikiaiiGrpNvGKStLvNallgeervivsdiaGtTrDsidievevkgkk..ylliDTAGirrkkkveekveklsvlrtlkaieradvvllvlDat..egiseqDlki..aglileegkalvivvNKwDlvkdekeleelkkeleeklkflkfapivfiSAltgkgveklle.aikevyeslskristsklnrv 361
                 +  +k+ +iG   vGKS L+ ++ ++     s i+ +  D    +++ +gk+  +++ DTAG  r + ++      s        + a+ +++v D+t  e++++  + +  ++  ++e+   ++v NK Dl     +++++++e  ++++    +p++ +SA++ ++ve+ +  ++ e+++++ +  sts+ n+ 
  MMETSP1137-20121227|2306_1   6 DYVFKLVLIGDSGVGKSCLLLRFADD-TYTESHISTIGVDFKIRTIQLEGKTikLQIWDTAGQERFRTIT-----SS------YYRGAHGIIVVYDTTdsETFEHVKTWLheIDRYASENVNKLLVGNKSDLS----SKRQVETEAAKEFANSVSIPFLETSAKNATNVEDAFMtMAGEIKKRMASTPSTSEGNKK 185
                 45689***************999765.5778888888888766666666665116789****99998886.....33......3455666677777763344555554441134455566677899*******....77889999999999999***************987651556999999999999987775 PP

  == domain 2    score: -2.4 bits;  conditional E-value: 0.57
   TIGR03594  13 KStLfNrlvkkrkAivedtpgvTRDrkygeaelkgkefiliD 54 
                 KS+++   ++++ A+  d++ + RDr   + + +++++ + D
  MMETSP1137-20121227|2306_1 318 KSSFLDVGAGEHGAVLCDESRLWRDRSRVRGDRAKEPVSVSD 359
                 7888888889999*************9988888877777655 PP

>> TIGR00450  mnmE_trmE_thdF: tRNA modification GTPase TrmE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.2   3.7e-07   0.00025     208     356 ..       7     159 ..       2     188 .. 0.67

  Alignments for each domain:
  == domain 1    score: 18.1 bits;  conditional E-value: 3.7e-07
   TIGR00450 208 dglklaivGktNvGKSSLlNallkkdraiVsdikGttRDvvEedleleGilv..kllDtAGiReaadkvEklGiekslkaikeadlvlyvlDaskpltkdd.....eliitlkkkkkdlllvlNKiDLa........eleilkselkltvsllsakqlkikelv 356
                   +kl+++G+  vGKS Ll  +  +d    s+i     D     ++leG ++  ++ DtAG            i  + +  + a  ++ v D + ++t ++     + i++   ++ + llv NK DL           +++ +++ ++   l++  ++  +++
  MMETSP1137-20121227|2306_1   7 YVFKLVLIGDSGVGKSCLLLRFA-DDTYTESHISTIGVDFKIRTIQLEGKTIklQIWDTAGQERFR------TI--TSSYYRGAHGIIVVYDTTDSETFEHvktwlHEIDRYASENVNKLLVGNKSDLSskrqveteAAKEFANSVSIPF--LETSAKNATNVE 159
                 569****************8876.577778999999999999999999966511689****53322......23..4456778888888889888887665432234577778888999*********9766443221222222233333..334444444444 PP

>> TIGR03156  GTP_HflX: GTP-binding protein HflX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.2   1.1e-06   0.00072     188     341 ..       7     159 ..       2     169 .. 0.79

  Alignments for each domain:
  == domain 1    score: 16.4 bits;  conditional E-value: 1.1e-06
   TIGR03156 188 evptvalvGYTNaGKstllnaltkaevlaedklFATLdpttrrlklpeee.evlltDTVGFirkLPheLveaFka.TLeevaeadlllhvvDasdeeaeeqieaveevLeelgaeeipvllvlNkidkleeeeleeleekk.ee.....avlvsAkkgegle 341
                  v+++ l+G    GKs ll ++++++  +        d ++r+++l+ ++ ++ + DT G          e F++ T    + a  ++ v D++d+e+ e++++  + ++    e++++llv Nk d+ +++++e++++k+ ++      +  sAk+ +++e
  MMETSP1137-20121227|2306_1   7 YVFKLVLIGDSGVGKSCLLLRFADDTYTESHISTIGVDFKIRTIQLEGKTiKLQIWDTAGQ---------ERFRTiTSSYYRGAHGIIVVYDTTDSETFEHVKTWLHEIDRYASENVNKLLVGNKSDLSSKRQVETEAAKEfANsvsipFLETSAKNATNVE 159
                 57889999999********99998877777777788999*******9885488999**994.........5566534556788999**********999999998888888899999*************99999988877544122223345666666665 PP

>> TIGR03597  GTPase_YqeH: ribosome biogenesis GTPase YqeH
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.1   0.0    0.0017       1.1     157     215 ..      10      67 ..       2      76 .. 0.72
   2 !    8.8   0.0   0.00025      0.17      58     119 ..      74     141 ..      67     198 .. 0.68

  Alignments for each domain:
  == domain 1    score: 6.1 bits;  conditional E-value: 0.0017
   TIGR03597 157 dvyvvGvtNVGKSsliNkllklnkgkkkvittS.kfpgTTldlieipldkesvllDtpGi 215
                 + +++G + VGKS l+ +  + + +++++ t+   f+  T++l    +  + ++ Dt+G 
  MMETSP1137-20121227|2306_1  10 KLVLIGDSGVGKSCLLLRFADDTYTESHISTIGvDFKIRTIQLEGKTI--KLQIWDTAGQ 67 
                 6689************99998888887755543256666666544444..4578899885 PP

  == domain 2    score: 8.8 bits;  conditional E-value: 0.00025
   TIGR03597  58 lnslsekkalvvavvD.....ifdlegslikelkrfvken.kvllvvNKidllpksvklekikewlkk 119
                  +s+ +  + ++ v D      f+  +++++e+ r+++en + llv+NK dl  k++ +++ ++   +
  MMETSP1137-20121227|2306_1  74 TSSYYRGAHGIIVVYDttdseTFEHVKTWLHEIDRYASENvNKLLVGNKSDLSSKRQVETEAAKEFAN 141
                 5555556666777777555556777789********98774789********9887666555444444 PP

>> TIGR00157  TIGR00157: ribosome small subunit-dependent GTPase A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.9   0.0   0.00063      0.43     126     142 ..      12      28 ..       9      41 .. 0.84
   2 !    5.5   0.1    0.0033       2.3      67     121 ..     111     166 ..      84     175 .. 0.85

  Alignments for each domain:
  == domain 1    score: 7.9 bits;  conditional E-value: 0.00063
   TIGR00157 126 vfaGqSGVGKSSLiNll 142
                 v++G SGVGKS L+ + 
  MMETSP1137-20121227|2306_1  12 VLIGDSGVGKSCLLLRF 28 
                 79***********9665 PP

  == domain 2    score: 5.5 bits;  conditional E-value: 0.0033
   TIGR00157  67 akniepiivlnkkdlleeedaekeqleelkn.lgYkvllvsvkneegleelkeklk 121
                  +n+++++v nk dl ++ ++e e ++e++n +    l +s+kn+ ++e+ + +++
  MMETSP1137-20121227|2306_1 111 SENVNKLLVGNKSDLSSKRQVETEAAKEFANsVSIPFLETSAKNATNVEDAFMTMA 166
                 5799******************888888876267778889****999998766655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (448 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       181  (0.0441248); expected 82.0 (0.02)
Passed bias filter:                      166  (0.0404681); expected 82.0 (0.02)
Passed Vit filter:                        34  (0.00828864); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.45u 0.16s 00:00:00.61 Elapsed: 00:00:00.62
# Mc/sec: 953.73
//
Query:       MMETSP1137-20121227|2307_1  [L=793]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (793 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       108  (0.0263286); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.50u 0.15s 00:00:00.65 Elapsed: 00:00:00.56
# Mc/sec: 1836.27
//
Query:       MMETSP1137-20121227|2308_1  [L=203]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (203 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       104  (0.0253535); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.15s 00:00:00.36 Elapsed: 00:00:00.33
# Mc/sec: 811.93
//
Query:       MMETSP1137-20121227|2309_1  [L=614]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (614 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       137  (0.0333983); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.14s 00:00:00.53 Elapsed: 00:00:00.48
# Mc/sec: 1688.36
//
Query:       MMETSP1137-20121227|2310_1  [L=507]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (507 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       107  (0.0260848); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.11s 00:00:00.45 Elapsed: 00:00:00.45
# Mc/sec: 1487.08
//
Query:       MMETSP1137-20121227|2311_1  [L=193]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (193 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        45  (0.0109703); expected 82.0 (0.02)
Passed bias filter:                       44  (0.0107265); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.12s 00:00:00.31 Elapsed: 00:00:00.31
# Mc/sec: 821.74
//
Query:       MMETSP1137-20121227|2312_1  [L=400]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.3e-12   45.6   0.0    1.2e-06   25.9   0.0    2.2  2  TIGR03896 cyc_nuc_ocin: bacteriocin-type transport-associated protein


Domain annotation for each model (and alignments):
>> TIGR03896  cyc_nuc_ocin: bacteriocin-type transport-associated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.0   1.2e-07    0.0005     147     246 ..     101     192 ..      96     216 .. 0.77
   2 !   25.9   0.0   2.9e-10   1.2e-06     149     242 ..     218     309 ..     210     318 .. 0.86

  Alignments for each domain:
  == domain 1    score: 17.3 bits;  conditional E-value: 1.2e-07
   TIGR03896 147 geleekDvaWlaksGkkkklsagtvlikegeavdaLYilLaGeaelsisedgasrevgssrrGeilGelsflnsdlaatatvkavealvlLaidkeelaa 246
                   l  +D a l ++  +k++sag+v+ik g+  d +Y++  Ge ++s++       vg   +   + el++l +    +atv a ++lv +++d   ++ 
  MMETSP1137-20121227|2312_1 101 QKLAPSDRAHLVAAFCEKRFSAGDVIIKQGDPGDLFYVVKSGECDISVAG------VGTVMKA-TVAELALLYGAPR-AATVAAETELVAFTLDMLTFKS 192
                 56777888999999999****************************99875......4555554.3679999999877.8999999999999888544333 PP

  == domain 2    score: 25.9 bits;  conditional E-value: 2.9e-10
   TIGR03896 149 leekDvaWlaksGkkkklsagtvlikegeavdaLYilLaGeaelsisedgasrev.gssrrGeilGelsflnsdlaatatvkavealvlLaidke 242
                 l e D   +a +  +++ +a+  +i eg+    +Y++ +Ge++   ++ g   ev g+++rG+ +Gel++l sd+  +atv +v  + +L++ + 
  MMETSP1137-20121227|2312_1 218 LSEADKRTIAYALSEREYPAERNIICEGDEGSEFYLIREGEVK--CTKAGVKDEVsGRLKRGDFFGELALLSSDKR-AATVTTVVPTTVLVLSRA 309
                 6666666677777788999999****************99865..67889888885799****************9.9*************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (400 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       139  (0.0338859); expected 82.0 (0.02)
Passed bias filter:                       98  (0.0238908); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.17s 00:00:00.51 Elapsed: 00:00:00.54
# Mc/sec: 977.70
//
Query:       MMETSP1137-20121227|2313_1  [L=72]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        29  (0.00706972); expected 82.0 (0.02)
Passed bias filter:                       23  (0.00560702); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.16s 00:00:00.27 Elapsed: 00:00:00.31
# Mc/sec: 306.56
//
Query:       MMETSP1137-20121227|2316_1  [L=347]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (347 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       117  (0.0285227); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.14s 00:00:00.41 Elapsed: 00:00:00.41
# Mc/sec: 1117.08
//
Query:       MMETSP1137-20121227|2317_1  [L=215]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.9e-26   89.4   0.1    4.5e-26   89.2   0.0    1.1  1  TIGR00691 spoT_relA: RelA/SpoT family protein


Domain annotation for each model (and alignments):
>> TIGR00691  spoT_relA: RelA/SpoT family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.2   0.0   1.1e-29   4.5e-26       1      65 [.     149     213 ..     149     215 .] 0.98

  Alignments for each domain:
  == domain 1    score: 89.2 bits;  conditional E-value: 1.1e-29
   TIGR00691   1 AlelakklHeeQkRksGePyiiHPlavalllaelglDeetviAaLLHDvvEDTdvteeeieeeFg 65 
                 Al++a+ +H++QkRk GeP+iiHP+ +a +la+l++D  t++A+LLHD+vEDT+ + +++e++Fg
  MMETSP1137-20121227|2317_1 149 ALQVATASHDGQKRKNGEPFIIHPIETAKILADLKMDLDTIVAGLLHDTVEDTPLNLQDVERLFG 213
                 899*************************************************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (215 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        62  (0.0151146); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.21u 0.16s 00:00:00.37 Elapsed: 00:00:00.38
# Mc/sec: 746.78
//
Query:       MMETSP1137-20121227|2318_1  [L=217]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (217 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       105  (0.0255973); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.14s 00:00:00.33 Elapsed: 00:00:00.78
# Mc/sec: 367.20
//
Query:       MMETSP1137-20121227|2319_1  [L=247]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (247 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        99  (0.0241346); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.16s 00:00:00.38 Elapsed: 00:00:00.43
# Mc/sec: 758.17
//
Query:       MMETSP1137-20121227|2320_1  [L=574]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (574 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        85  (0.0207216); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.15s 00:00:00.50 Elapsed: 00:00:00.42
# Mc/sec: 1803.85
//
Query:       MMETSP1137-20121227|2321_1  [L=616]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00014   18.9   0.0    0.00031   17.8   0.0    1.5  1  TIGR02721 ycfN_thiK: thiamine kinase


Domain annotation for each model (and alignments):
>> TIGR02721  ycfN_thiK: thiamine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.0   7.5e-08   0.00031      49     163 ..     194     320 ..     188     377 .. 0.71

  Alignments for each domain:
  == domain 1    score: 17.8 bits;  conditional E-value: 7.5e-08
   TIGR02721  49 salklaPkvilvneewllvewleGevitkd....efvaldellelaallaqlhsqplsga.rlslkarlaqyWlqid......parrtpellrl.lkqfrkapepaplklallHlDvhaeNlvkteq 163
                 +a +l+P+v+  n+e+++ +++ G+++t+     ++ +   l+ la +la lhs pl+ + +  l + +++  lqi+      p+  tpe + +   ++r++    +++++  H D+   N+++ e 
  MMETSP1137-20121227|2321_1 194 AAHGLGPRVMYKNDEGMITDFVRGRTLTETdihdKKAHKGVLKALAPKLAALHSVPLPSQePPVLWHFMEEMLLQIKkgeaalPEGITPEQVSAeVARMRRRFDELQMPVVNGHGDLKPSNVMQREV 320
                 4678************************752321223333456789999999999987532444555555544444311111145556665443155666666677788888888888888887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (616 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        81  (0.0197465); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.14s 00:00:00.55 Elapsed: 00:00:00.41
# Mc/sec: 1983.06
//
Query:       MMETSP1137-20121227|2322_1  [L=107]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (107 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        24  (0.0058508); expected 82.0 (0.02)
Passed bias filter:                       19  (0.00463189); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.27
# Mc/sec: 523.07
//
Query:       MMETSP1137-20121227|2323_1  [L=109]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (109 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        42  (0.0102389); expected 82.0 (0.02)
Passed bias filter:                       40  (0.00975134); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.14s 00:00:00.29 Elapsed: 00:00:00.25
# Mc/sec: 575.47
//
Query:       MMETSP1137-20121227|2324_1  [L=92]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (92 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        44  (0.0107265); expected 82.0 (0.02)
Passed bias filter:                       42  (0.0102389); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.13s 00:00:00.26 Elapsed: 00:00:00.27
# Mc/sec: 449.74
//
Query:       MMETSP1137-20121227|2325_1  [L=190]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (190 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       104  (0.0253535); expected 82.0 (0.02)
Passed bias filter:                       97  (0.023647); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.17s 00:00:00.35 Elapsed: 00:00:00.28
# Mc/sec: 864.76
//
Query:       MMETSP1137-20121227|2326_1  [L=304]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (304 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       107  (0.0260848); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.12s 00:00:00.35 Elapsed: 00:00:00.50
# Mc/sec: 802.49
//
Query:       MMETSP1137-20121227|2327_1  [L=420]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0091   13.3  16.9     0.0037   14.5   9.8    1.7  2  TIGR00950 2A78: carboxylate/amino acid/amine transporter


Domain annotation for each model (and alignments):
>> TIGR00950  2A78: carboxylate/amino acid/amine transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.2     0.078   3.2e+02      75     172 ..     110     146 ..     104     219 .. 0.62
   2 !   14.5   9.8     9e-07    0.0037      99     262 ..     230     399 ..     172     401 .. 0.79

  Alignments for each domain:
  == domain 1    score: -1.6 bits;  conditional E-value: 0.078
   TIGR00950  75 iaalllvlaPlyvtllsdllekervrkkkllAavlalaGivlllsdgnlsislaGlllgllsgisfAlgtvlakrlvkkeglellqftgfvvlliGal 172
                 i++l+ + +P++  ++   ++   v ++  +   ++                                                          + +l
  MMETSP1137-20121227|2327_1 110 ITLLFSSNSPAIHGAFTAGVNPPPVLVLNAM---VS----------------------------------------------------------CIGL 146
                 3445555555555555555552222222222...22..........................................................2222 PP

  == domain 2    score: 14.5 bits;  conditional E-value: 9e-07
   TIGR00950  99 vrkkkllAavlalaGivlllsdg.nlsislaGlllgllsgisfAlgtvlakrlvkkeglellqftgfvv...lliGallllpfal..l.lgpnlqalpatslqwlallyLgligtllayflynkglkevdasaasilalleplvallLgllilgetlslvqliggalilaa 262
                 +  + + A+ lalaG++l  +d   +  s +G l+ +  ++ + ++ +    ++k+ g+ +l  ++ +v   l +G l++++++   + ++ n       +l +l++l+ g+   +la  l   g + v +++a ++   +pl a+ +++l+lget+ l+  +ggal ++a
  MMETSP1137-20121227|2327_1 230 IPTRIWTAIGLALAGMALFTQDPdATGVSAQGDLFCVFTAVLYSVYDLRLFHWGKRVGPLQLITAKVGVqaaLSVG-LAVALTSSdeFnAFLNGINGDNVGLLLLVALWCGVAVNALAPLLQVEGQQLVGPARAQVIYASQPLWAAAMSTLLLGETVGLTGAFGGALFIGA 399
                 56788*****************98889999***************************9877666554431113333.333333321111222333334457888899999******************************************************9999877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (420 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       122  (0.0297416); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.12s 00:00:00.45 Elapsed: 00:00:00.45
# Mc/sec: 1231.90
//
Query:       MMETSP1137-20121227|2328_1  [L=186]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (186 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        74  (0.01804); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.16s 00:00:00.35 Elapsed: 00:00:00.24
# Mc/sec: 1022.92
//
Query:       MMETSP1137-20121227|2329_1  [L=413]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.012   13.7   0.0      0.024   12.6   0.0    1.5  1  TIGR01575 rimI: ribosomal-protein-alanine acetyltransferase


Domain annotation for each model (and alignments):
>> TIGR01575  rimI: ribosomal-protein-alanine acetyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   5.9e-06     0.024      36      80 ..     253     298 ..     240     308 .. 0.87

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 5.9e-06
   TIGR01575  36 laeeggkvvGyiv.vqivldeaeilniavkpeyqgqGiGraLlkel 80 
                  a+ g++++Gy    ++ ld  +i  i v p+ q++G+G+ L++  
  MMETSP1137-20121227|2329_1 253 GADGGHRIAGYFSkEKVSLDGNNIACILVLPQHQRKGYGKLLIDCA 298
                 5677899****997889999**********************9865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (413 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       117  (0.0285227); expected 82.0 (0.02)
Passed bias filter:                       96  (0.0234032); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.30u 0.14s 00:00:00.44 Elapsed: 00:00:00.45
# Mc/sec: 1211.37
//
Query:       MMETSP1137-20121227|2331_1  [L=454]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.1e-38  128.3   0.1    1.7e-37  127.3   0.1    1.5  2  TIGR03169 Nterm_to_SelD: pyridine nucleotide-disulfide oxidoreductase family protein
    1.9e-22   77.4   0.0    1.7e-20   71.0   0.0    2.1  2  TIGR01350 lipoamide_DH: dihydrolipoyl dehydrogenase
    1.1e-18   65.1   0.0    1.5e-18   64.6   0.0    1.2  1  TIGR03385 CoA_CoA_reduc: CoA-disulfide reductase
    5.2e-18   63.1   0.1    8.5e-18   62.4   0.1    1.3  1  TIGR02053 MerA: mercuric reductase
    2.1e-16   57.3   0.0    3.2e-16   56.7   0.0    1.2  1  TIGR02374 nitri_red_nirB: nitrite reductase [NAD(P)H], large subunit
      1e-15   55.1   0.0    1.6e-15   54.4   0.0    1.3  1  TIGR01424 gluta_reduc_2: glutathione-disulfide reductase
    1.1e-13   48.8   0.5    2.1e-13   47.8   0.4    1.4  1  TIGR03452 mycothione_red: mycothione reductase
    1.2e-12   45.6   0.1    5.9e-12   43.3   0.0    1.9  2  TIGR01421 gluta_reduc_1: glutathione-disulfide reductase
    1.5e-11   41.3   0.0    2.2e-11   40.8   0.0    1.2  1  TIGR01423 trypano_reduc: trypanothione-disulfide reductase
    6.8e-08   29.5   0.1    1.5e-07   28.3   0.0    1.6  2  TIGR04018 Bthiol_YpdA: putative bacillithiol system oxidoreductase, YpdA family
    1.3e-07   28.6   0.0    8.9e-06   22.5   0.0    2.4  2  TIGR01292 TRX_reduct: thioredoxin-disulfide reductase
    3.9e-07   27.1   0.1    9.7e-07   25.8   0.0    1.6  2  TIGR01438 TGR: thioredoxin and glutathione reductase
    0.00018   18.3   0.0       0.25    8.0   0.0    2.7  3  TIGR01988 Ubi-OHases: ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family
    0.00042   17.0   0.0      0.012   12.2   0.0    2.1  2  TIGR03329 Phn_aa_oxid: putative aminophosphonate oxidoreductase
     0.0072   13.0   0.0       0.34    7.5   0.0    2.5  3  TIGR01984 UbiH: 2-polyprenyl-6-methoxyphenol 4-hydroxylase
     0.0088   12.7   0.0        1.7    5.2   0.0    2.9  3  TIGR00275 TIGR00275: flavoprotein, HI0933 family
  ------ inclusion threshold ------
      0.018   11.5   0.1      0.088    9.2   0.0    2.0  3  TIGR00562 proto_IX_ox: protoporphyrinogen oxidase
      0.036    9.2   0.0      0.053    8.7   0.0    1.1  1  TIGR03315 Se_ygfK: putative selenate reductase, YgfK subunit


Domain annotation for each model (and alignments):
>> TIGR03169  Nterm_to_SelD: pyridine nucleotide-disulfide oxidoreductase family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.0      0.32        73     145     165 ..      52      72 ..      37      74 .. 0.79
   2 !  127.3   0.1   7.2e-40   1.7e-37       4     345 ..      57     407 ..      54     418 .. 0.86

  Alignments for each domain:
  == domain 1    score: 0.2 bits;  conditional E-value: 0.32
   TIGR03169 145 tkslavvGgGaagvElalalr 165
                  +++ v+GgG++g+  al l 
  MMETSP1137-20121227|2331_1  52 REDICVLGGGFGGLYTALKLS 72 
                 5689*********99888776 PP

  == domain 2    score: 127.3 bits;  conditional E-value: 7.2e-40
   TIGR03169   4 LvGgGHahalvLkklamkp..kagvrvtlispssttlYSGMlPgliaghysedeiridlrrlaekagaelvedeatgldleerkvllaeree....isydvlsldvGsttalsevegaadkavpvKPleellaaweellekakaseetkslavvGgGaagvElalalrkrlkkrglkaevsla.seakllqalsakvrklvkrllakrgievlekeevtevedealll...aegetleadavllatgakapawLaesglsldedGflavkktLqslshpevFaaGDcavikeap...rpkaGVyAVrqakiLaaNLeaalegqplkkfrpqkkalkllntgdrravaskg.vllla 345
                  +GgG   + +  kl++      + r+tl++++++  +  M+ +l  g  s  e++   ++  + +g+++ ++ + +ld e++ +++a+++e    ++y+ ++l  Gs+++   v ga+++ +p   l+++l+ +e+ll +      + +++vvGg   gvEla +lr+ l ++    +++l+ ++ +ll++++++ r+  +++l+ +g++vl +++v++v+++ + l   +++++l+ad+v++++g+k++ + a+ g+++d++G++ v++ L++ + ++v a GD+a+i++a+    p+    A +qa+  a+N++aal+g+   +fr   +  ++l++g  +a +s   v+ ++
  MMETSP1137-20121227|2331_1  57 VLGGGFGGLYTALKLSKLDwgTCKPRITLVDKHDRFAFLPMMYELTTGSVSCWEVAPMFEEVLNGSGVQFLQGDVXRLDRESKLITVATGDExsrqLPYNQCVLALGSEVSYAGVAGAREHSFPFYTLDDALQLREALLTRR-LGAAPVRVVVVGGSYIGVELAANLREWLGDKV---DLTLVhRSDSLLSNSEEHNRRVGTQRLRSSGVKVLLDSSVARVTEDGVALsanGAEQQLSADIVVWTAGSKPSGLAASLGVEVDAKGRVVVDSALRVCGCDDVHALGDVASINDASgasVPSTAQSAMQQAEXAAWNVRAALRGERPLAFRYA-NLGEMLSLGGAEASLSSLgVFNFE 407
                 56777766655555555444488889*************************************************************9886444449************************************999999986.666678*******************9886654...467877999*************************************8887444567899*****************************************************997522267777889*****************999988854.344555555555544443355555 PP

>> TIGR01350  lipoamide_DH: dihydrolipoyl dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   0.0     0.011       2.5       3      24 ..      54      75 ..      52      90 .. 0.86
   2 !   71.0   0.0   7.7e-23   1.7e-20     101     310 ..     121     341 ..     115     374 .. 0.75

  Alignments for each domain:
  == domain 1    score: 4.5 bits;  conditional E-value: 0.011
   TIGR01350  3 dvvviGgGpgGYvaAiraaqlg 24
                d++v+GgG gG  +A + ++l 
  MMETSP1137-20121227|2331_1 54 DICVLGGGFGGLYTALKLSKLD 75
                9***************998875 PP

  == domain 2    score: 71.0 bits;  conditional E-value: 7.7e-23
   TIGR01350 101 knkvevikGeaklld..kkevevkkekke.kkleakniiiAtGseprelplk.leedek.vvitseealelke.........vpeslvivGgGviGvEfasifak.lG..vkvtvielldrilpaldaevskvlkkklkkkgvkiltnakvtevekeedevvveakkkevetleaekvLvavGrkpnleelgleklgveldergaikvdeelrt.nvpgiyaiGDvig 310
                   +v+ ++G    ld  +k ++v++ ++  ++l ++++++A Gse++   ++   ++++    t ++al+l+e         +p ++v+vGg +iGvE+a  +++ lG  v++t++  +d +l + +++  +v +++l+ +gvk+l +++v +   +ed v ++a++ e ++l+a+ v+ + G kp+      ++lgve+d +g+++vd+ lr+   ++++a GDv++
  MMETSP1137-20121227|2331_1 121 GSGVQFLQGDVXRLDreSKLITVATGDEXsRQLPYNQCVLALGSEVSYAGVAgA-REHSfPFYTLDDALQLREalltrrlgaAPVRVVVVGGSYIGVELAANLREwLGdkVDLTLVHRSDSLLSNSEEHNRRVGTQRLRSSGVKVLLDSSVAR--VTEDGVALSANGAE-QQLSADIVVWTAGSKPSGL---AASLGVEVDAKGRVVVDSALRVcGCDDVHALGDVAS 341
                 5566666666554442255688888776568999*************9999852.333324566666666654222222333799**************98776636733567***************************************5..55677777778885.99**************976...6789****************9835899******975 PP

>> TIGR03385  CoA_CoA_reduc: CoA-disulfide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.6   0.0   6.5e-21   1.5e-18      76     289 ..     128     346 ..      54     375 .. 0.80

  Alignments for each domain:
  == domain 1    score: 64.6 bits;  conditional E-value: 6.5e-21
   TIGR03385  76 ksevikvdkeektvvvknnktnekyeesyDkLilstGAkpkileiegieldavftlrnledaeaikkyldkkk....vekvvviGgGyiglemvealke...rgkevtliersekilnkllDeeiakiveeelekkeielrlneevksvegeekve.vltsgkvyqaDlvilavGvkPnselikssqlklgkkGaikvnekfqt.sveniyaiGDvaeskniv 289
                 + +v ++d+e+k ++v   ++  +    y++ +l+ G +     + g   +++f    l+da ++++ l +++      +vvv+Gg yig+e++ +l+e    ++++tl++rs+++l ++ +e   ++ +++l++ ++++ l+ +v  v +++++      +++ +aD+v+ + G kP s l+ s++++++ kG ++v+  ++    ++++a+GDva +++  
  MMETSP1137-20121227|2331_1 128 QGDVXRLDRESKLITVATGDEXSRQL-PYNQCVLALGSEVSYAGVAG-AREHSFPFYTLDDALQLREALLTRRlgaaPVRVVVVGGSYIGVELAANLREwlgDKVDLTLVHRSDSLLSNS-EEHNRRVGTQRLRSSGVKVLLDSSVARVTEDGVALsANGAEQQLSADIVVWTAGSKP-SGLAASLGVEVDAKGRVVVDSALRVcGCDDVHALGDVASINDAS 346
                 56899***********9877655443.7*******************.8999*************9987665512115799*****************943346789*********7765.4444566689**********************98634445566789***********.579999****************9962689*********988754 PP

>> TIGR02053  MerA: mercuric reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.4   0.1   3.7e-20   8.5e-18      94     309 ..     115     341 ..     107     370 .. 0.78

  Alignments for each domain:
  == domain 1    score: 62.4 bits;  conditional E-value: 3.7e-20
   TIGR02053  94 Yedvlesydavdllegkakfkd..ektvkvdlgkevvg...akrvliAtGarpavPeipGLkeae........yltseell...eldkipeslvviGggaiavElaq.lfarlGsev..tllqrserllkeeepeisaaveellaeeGvevvksakvkavskrnggkklvtvekndskkeveadellvAtGRkpnvdgLnLekvgvklderGeilvdeklrts.npkiyAAGDvik 309
                 +e+vl+   +v++l+g     d   k + v++g e      ++++++A G+  +   + G +e +        +l+  e+l    l   p ++vv+Gg++i+vEla  l + lG +v  tl++rs+ ll++ e++   + ++ l++ Gv+v+ +++v +v +    +  v +  n++++++ ad ++  +G kp         +gv++d +G ++vd+ lr     +++A GDv +
  MMETSP1137-20121227|2331_1 115 FEEVLNGS-GVQFLQGDVXRLDreSKLITVATGDEXSRqlpYNQCVLALGSEVSYAGVAGAREHSfpfytlddALQLREALltrRLGAAPVRVVVVGGSYIGVELAAnLREWLGDKVdlTLVHRSDSLLSNSEEHNRRVGTQRLRSSGVKVLLDSSVARVTED---G--VALSANGAEQQLSADIVVWTAGSKPSGL---AASLGVEVDAKGRVVVDSALRVCgCDDVHALGDVAS 341
                 67888888.48888887654331156678887555433122577******************99989665555444444441222455789*************97615567997764489**********************************99999883...3..45788889****************9744...3679****************9762679******965 PP

>> TIGR02374  nitri_red_nirB: nitrite reductase [NAD(P)H], large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.7   0.0   1.4e-18   3.2e-16      67     283 ..     122     345 ..      89     385 .. 0.82

  Alignments for each domain:
  == domain 1    score: 56.7 bits;  conditional E-value: 1.4e-18
   TIGR02374  67 hgikllvnervikidreeksvitdag....rtlsyDkLilatGsypfilPipGaDkkgvfvyrtieDldaleaa..akrtkka....aviGgGLLGLeaaraLkn.lG..ldvsvielapllmakqlDqtagrlLqrelekkGltvlleketveivkesvekaerlrfkDGssleadlvvlaaGirPrdeLaaeaGlkvndrrGiivndsmqtsd.PdiyavGecaehngr 283
                  g++ l +  v ++dre+k +  ++g    r+l+y++ +la Gs      + Ga +   f + t++D   l+ a  ++r   a    +v+Gg  +G+e a  L++ lG  +d   ++ +  l+ +  ++   r   ++l + G++vll+     +++++v           ++l ad+vv +aG +P   Laa+ G++v+ ++ ++v+  ++     d++a+G++a++n+ 
  MMETSP1137-20121227|2331_1 122 SGVQFLQG-DVXRLDRESKLITVATGdexsRQLPYNQCVLALGSEVSYAGVAGARE-HSFPFYTLDDALQLREAllTRRLGAApvrvVVVGGSYIGVELAANLREwLGdkVDLTLVHRSDSLLSNS-EEHNRRVGTQRLRSSGVKVLLDSSVARVTEDGVAL---SANGAEQQLSADIVVWTAGSKPS-GLAASLGVEVDAKGRVVVDSALRVCGcDDVHALGDVASINDA 345
                 56666555.5899*****988755432233899********************965.678999****988887622455544499989*************99985775578889*******9876.77788999999**********98777777766322...22234578**************6.7*********************9865168**********975 PP

>> TIGR01424  gluta_reduc_2: glutathione-disulfide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.4   0.0   7.2e-18   1.6e-15     161     303 ..     198     340 ..     109     359 .. 0.77

  Alignments for each domain:
  == domain 1    score: 54.4 bits;  conditional E-value: 7.2e-18
   TIGR01424 161 dletlPksilvvGgGyiavefag.ifrGlGvkv..tllyrgekilrgfdddvraelaeeleerGirillktvlksiekvddG.lkvtlskdeeivadvvllatGrvPnvkglgleaaGvelndagaiavdeysrt.svpsiyavGdvt 303
                  l + P +++vvGg yi+ve+a+ + + lG kv  tl++r + +l++ +++ r+  ++ l   G+++ll++++  ++  +dG  +++   ++++ ad+v+ + G +P   gl+  + Gve++ +g ++vd   r    ++++a+Gdv+
  MMETSP1137-20121227|2331_1 198 RLGAAPVRVVVVGGSYIGVELAAnLREWLGDKVdlTLVHRSDSLLSNSEEHNRRVGTQRLRSSGVKVLLDSSVARVT--EDGvALSANGAEQQLSADIVVWTAGSKPS--GLA-ASLGVEVDAKGRVVVDSALRVcGCDDVHALGDVA 340
                 35578***************9861555688776226799**********************************9996..57834444558899**************7..454.357*************98875269********97 PP

>> TIGR03452  mycothione_red: mycothione reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.8   0.4   9.1e-16   2.1e-13     163     306 ..     197     341 ..     136     346 .. 0.73

  Alignments for each domain:
  == domain 1    score: 47.8 bits;  conditional E-value: 9.1e-16
   TIGR03452 163 mrlpelpeslvivGgGyialefah.vfsalGtkv..tlvarsekllrkldediserftelakkkfdvrlgrnvtaaeqdddgvtlelddG.stveadvllvatGrvpngdlldaeaaGvevdedgrvkvdeyqr.tsaegvfalGdvss 306
                  rl   p ++v+vGg yi +e+a+ + + lG kv  tlv rs++ll + +e   +r+ ++  +   v+     + a+ ++dgv+l+ +   ++++ad+++ + G  p g    a++ Gvevd +grv vd   r   +++v+alGdv+s
  MMETSP1137-20121227|2331_1 197 RRLGAAPVRVVVVGGSYIGVELAAnLREWLGDKVdlTLVHRSDSLLSNSEEH-NRRVGTQRLRSSGVKVLLDSSVARVTEDGVALSANGAeQQLSADIVVWTAGSKPSGL---AASLGVEVDAKGRVVVDSALRvCGCDDVHALGDVAS 341
                 367778***************98626678997764499********998876.5666666666666676666677778899****9986526799*********999985...4677**************9995679*********98 PP

>> TIGR01421  gluta_reduc_1: glutathione-disulfide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0      0.59   1.3e+02       4      20 ..      54      70 ..      45      86 .. 0.85
   2 !   43.3   0.0   2.6e-14   5.9e-12     162     306 ..     199     341 ..     193     354 .. 0.84

  Alignments for each domain:
  == domain 1    score: -0.7 bits;  conditional E-value: 0.59
   TIGR01421  4 dylviGGGsGGiasarr 20
                d+ v+GGG GG+ +a +
  MMETSP1137-20121227|2331_1 54 DICVLGGGFGGLYTALK 70
                89999999999988765 PP

  == domain 2    score: 43.3 bits;  conditional E-value: 2.6e-14
   TIGR01421 162 leelPkrvvivGaGyiavelaGvlhg.lGsktdl..virrervlrsfdelisekvveelekaglevhklskvvkvektvegklvitledgkeiedvdeliwaiGrkpntkdlglekvgvkldekgyikvde.yqntnvegiyalGdvvG 306
                 l   P rvv+vG  yi+vela  l+  lG k dl  v r +  l + +e      +++l+ +g++v+  s v++v    +g +    + +++  ++d ++w+ G kp+        +gv++d kg + vd   +    ++++alGdv  
  MMETSP1137-20121227|2331_1 199 LGAAPVRVVVVGGSYIGVELAANLREwLGDKVDLtlVHRSDSLLSNSEEHNRRVGTQRLRSSGVKVLLDSSVARVTE--DG-VALSANGAEQQLSADIVVWTAGSKPSGLA---ASLGVEVDAKGRVVVDSaLRVCGCDDVHALGDVAS 341
                 566899***************9997549999886215688999999999999999****************999854..44.5566677778899***********98765...4579************835667899*******975 PP

>> TIGR01423  trypano_reduc: trypanothione-disulfide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.8   0.0   9.7e-14   2.2e-11     183     328 ..     199     340 ..     122     352 .. 0.90

  Alignments for each domain:
  == domain 1    score: 40.8 bits;  conditional E-value: 9.7e-14
   TIGR01423 183 leeapkrvltvgggyisvefagifnaykavggkvdlayrndmilrgfdselrkeltkqlvangidvrtnenpakveknadgskhvvfesgkeldvdvvmlaigrlprsqtlqldkvgveladkgaikvdeysk.tnvdniyaigdvt 328
                 l  ap rv++vgg yi ve+a  +  +     +++l++r+d +l   + + r+  t++l++ g++v  +   a+v+   dg    +  + ++l  d+v+ + g  p          gve+  kg + vd+  +    d+++a+gdv+
  MMETSP1137-20121227|2331_1 199 LGAAPVRVVVVGGSYIGVELAANLREWLGDKVDLTLVHRSDSLLSNSEEHNRRVGTQRLRSSGVKVLLDSSVARVT--EDGVALSANGAEQQLSADIVVWTAGSKPSGLA---ASLGVEVDAKGRVVVDSALRvCGCDDVHALGDVA 340
                 6679*****************98888776666777899*******************************9999998..58999999999999************998755...467*************87772579********97 PP

>> TIGR04018  Bthiol_YpdA: putative bacillithiol system oxidoreductase, YpdA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0       1.8     4e+02       1      20 [.      54      73 ..      54      77 .. 0.88
   2 !   28.3   0.0   6.8e-10   1.5e-07     154     294 ..     205     345 ..     201     362 .. 0.86

  Alignments for each domain:
  == domain 1    score: -2.6 bits;  conditional E-value: 1.8
   TIGR04018  1 dviiiGaGPiGlaaaieakk 20
                d++++G+G  Gl +a+++ k
  MMETSP1137-20121227|2331_1 54 DICVLGGGFGGLYTALKLSK 73
                899***********999877 PP

  == domain 2    score: 28.3 bits;  conditional E-value: 6.8e-10
   TIGR04018 154 kvvvvGgknsavdaalelyr...kgaevtlvvrgeelsekvkyWvkpdlenrikegkikalfesevkeieeesvtletpegeveeiendfvlaltGyrpdlelleklgveleedekipvydeetmEtnveglylaGvvaaglet 294
                 +vvvvGg+   v+ a +l +      ++tlv+r ++l ++     +   ++r+++  +k+l++s+v +++e+ v l+  +g ++++++d v+   G +p   l ++lgve++++ ++ v+d+       ++++  G va+ +++
  MMETSP1137-20121227|2331_1 205 RVVVVGGSYIGVELAANLREwlgDKVDLTLVHRSDSLLSNSEEHNRRVGTQRLRSSGVKVLLDSSVARVTEDGVALSA-NGAEQQLSADIVVWTAGSKPS-GLAASLGVEVDAK-GRVVVDSALRVCGCDDVHALGDVASINDA 345
                 79***********999886521245567*************************************************9.67777***************6.699********99.67788887777777888777777766655 PP

>> TIGR01292  TRX_reduct: thioredoxin-disulfide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.0     0.024       5.5      57     122 ..     109     176 ..      53     179 .. 0.81
   2 !   22.5   0.0   3.9e-08   8.9e-06     143     276 ..     205     341 ..     203     364 .. 0.80

  Alignments for each domain:
  == domain 1    score: 3.5 bits;  conditional E-value: 0.024
   TIGR01292  57 selmekmkeqakkfgaeiileevkkvdkkerpfkvlte..dekeykakaviiAtGakarklgikgeee 122
                  e++  ++e ++  g++++  +v ++d++++  +v t+   +++   + +++A G++  + g++g  e
  MMETSP1137-20121227|2331_1 109 WEVAPMFEEVLNGSGVQFLQGDVXRLDRESKLITVATGdeXSRQLPYNQCVLALGSEVSYAGVAGARE 176
                 55556666777778999999***********999999933346677899*********9999998655 PP

  == domain 2    score: 22.5 bits;  conditional E-value: 3.9e-08
   TIGR01292 143 evavvGggdsAveealyLsk.iakkV..tlvhrrdklraekillerlkkne.....kievllnstveeikGdekvesvkikntktkeeeelkvdgvFiaiGhepntellkelleldeegyivvdee.mrTsveGvfaaGDvrd 276
                 +v+vvGg    ve a  L + +++kV  tlvhr d+l +++   +r   ++      ++vll+s v ++++d    +v ++  +++ e++l++d v  + G++p+    +  +e+d +g +vvd+       + v+a GDv +
  MMETSP1137-20121227|2331_1 205 RVVVVGGSYIGVELAANLREwLGDKVdlTLVHRSDSLLSNSEEHNRRVGTQrlrssGVKVLLDSSVARVTED----GVALS--ANGAEQQLSADIVVWTAGSKPSGLAASLGVEVDAKGRVVVDSAlRVCGCDDVHALGDVAS 341
                 699***************983577875579******998877666543333233448999999999999987....46666..8999*****************87766666**************445689*********87 PP

>> TIGR01438  TGR: thioredoxin and glutathione reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0       1.3     3e+02       4      23 ..      54      73 ..      53      78 .. 0.83
   2 !   25.8   0.0   4.2e-09   9.7e-07     130     322 ..     141     341 ..     114     356 .. 0.74

  Alignments for each domain:
  == domain 1    score: -2.2 bits;  conditional E-value: 1.3
   TIGR01438  4 dliviGgGsGGlaaakeaak 23
                d+ v+GgG GGl +a + +k
  MMETSP1137-20121227|2331_1 54 DICVLGGGFGGLYTALKLSK 73
                789*********99877665 PP

  == domain 2    score: 25.8 bits;  conditional E-value: 4.2e-09
   TIGR01438 130 ikatdkkkkeeilsakrvliatGlrpkypddieGakelsi...tsddlfslkk.........vpGktlvvGasyvalecaGflaa.lg..ldvtvlvrsillrGfdqdcavkvk.eylkeqGvkfkeqvlpkkvekveakvlvkftdkdntieeeydtvlyaiGrkadlkklnlenvgvkvnkksgkiladelertnvpsiyavGdive 322
                 i+     +  + l  ++ ++a G    y + + Ga+e s    t dd + l++         +p + +vvG+sy+ +e a  l   lg   d+t++ rs  l    ++  ++v+ + l+  Gvk+  +  + +v++ +    ++ +      +   d v++++G k++   l   ++gv+v+ k   ++   l  + ++ ++a+Gd++ 
  MMETSP1137-20121227|2331_1 141 ITVATGDEXSRQLPYNQCVLALGSEVSYAG-VAGAREHSFpfyTLDDALQLREalltrrlgaAPVRVVVVGGSYIGVELAANLREwLGdkVDLTLVHRSDSLLSNSEEHNRRVGtQRLRSSGVKVLLDSSVARVTEDGVALSANGA----EQQLSADIVVWTAGSKPSG--LA-ASLGVEVDAKGRVVVDSALRVCGCDDVHALGDVAS 341
                 454455555566667788888888888886.9999998854447788776653222222222799**************999875255225678889**999999999999986268********999999999876554444444....3456679*******99974..43.589*****98777777778999**********985 PP

>> TIGR01988  Ubi-OHases: ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.0   0.0    0.0011      0.25       1      33 [.      54      90 ..      54     112 .. 0.87
   2 !    7.2   0.0    0.0018      0.42       2      46 ..     206     252 ..     205     266 .. 0.84
   3 ?   -1.3   0.0      0.72   1.6e+02     133     177 ..     271     315 ..     254     318 .. 0.64

  Alignments for each domain:
  == domain 1    score: 8.0 bits;  conditional E-value: 0.0011
   TIGR01988  1 divIvGgGlvGlalAlaLassa....dlkvalveaka 33
                di + GgG  Gl +Al+L++      + +++lv++++
  MMETSP1137-20121227|2331_1 54 DICVLGGGFGGLYTALKLSKLDwgtcKPRITLVDKHD 90
                899****************887888888999999886 PP

  == domain 2    score: 7.2 bits;  conditional E-value: 0.0018
   TIGR01988   2 ivIvGgGlvGlalAlaLassa..dlkvalveakaaekakspafdnRv 46 
                 +v+vGg ++G  lA++L++    +++ +lv ++++  ++s+  + Rv
  MMETSP1137-20121227|2331_1 206 VVVVGGSYIGVELAANLREWLgdKVDLTLVHRSDSLLSNSEEHNRRV 252
                 8*****************76678899999999988877777766666 PP

  == domain 3    score: -1.3 bits;  conditional E-value: 0.72
   TIGR01988 133 eeleresdaveltlsd.getleakLlvgADG.anSkvrqaagiktte 177
                  +++  +d v+l  +  +++l+a+++v   G + S ++ ++g+++++
  MMETSP1137-20121227|2331_1 271 ARVT--EDGVALSANGaEQQLSADIVVWTAGsKPSGLAASLGVEVDA 315
                 4444..45555555541566****99975552679999999998765 PP

>> TIGR03329  Phn_aa_oxid: putative aminophosphonate oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.2   0.0   5.3e-05     0.012      20      45 ..      48      73 ..      37      89 .. 0.80
   2 ?    2.5   0.0     0.046        11       2      45 ..     182     224 ..     180     238 .. 0.83

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 5.3e-05
   TIGR03329 20 kgdteadvaivGGGftGlwtaillkq 45
                +g  + d++++GGGf Gl+ta++l +
  MMETSP1137-20121227|2331_1 48 EGLGREDICVLGGGFGGLYTALKLSK 73
                5566789***************9876 PP

  == domain 2    score: 2.5 bits;  conditional E-value: 0.046
   TIGR03329   2 fwleqaleleqsdlakalkgdteadvaivGGGftGlwtaillkq 45 
                 + l++al+l ++ l++ l g+  + v++vGG + G+  a  l++
  MMETSP1137-20121227|2331_1 182 YTLDDALQLREALLTRRL-GAAPVRVVVVGGSYIGVELAANLRE 224
                 568999999999999888.67889***********988877775 PP

>> TIGR01984  UbiH: 2-polyprenyl-6-methoxyphenol 4-hydroxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.5   0.0    0.0015      0.34       1      33 [.      54      90 ..      54     106 .. 0.91
   2 ?    2.8   0.0     0.038       8.7       2      37 ..     206     243 ..     205     266 .. 0.78
   3 ?   -2.6   0.0       1.8     4e+02     137     170 ..     276     311 ..     254     316 .. 0.65

  Alignments for each domain:
  == domain 1    score: 7.5 bits;  conditional E-value: 0.0015
   TIGR01984  1 dviivGgglvGlslAlaLsrks....klkialieaks 33
                d+ ++Ggg  Gl +Al Ls+      k +i+l+++++
  MMETSP1137-20121227|2331_1 54 DICVLGGGFGGLYTALKLSKLDwgtcKPRITLVDKHD 90
                899****************9987788999****9987 PP

  == domain 2    score: 2.8 bits;  conditional E-value: 0.038
   TIGR01984   2 viivGgglvGlslAlaLsrks..klkialieaksaeaa 37 
                 v++vGg+ +G+ lA  L +    k++ +l+   +   +
  MMETSP1137-20121227|2331_1 206 VVVVGGSYIGVELAANLREWLgdKVDLTLVHRSDSLLS 243
                 89***************986557888888877665444 PP

  == domain 3    score: -2.6 bits;  conditional E-value: 1.8
   TIGR01984 137 deaevkld.neqkleakLlvaAdGan.skvreslsi 170
                 d + + ++  eq+l+a+++v   G++ s ++ sl +
  MMETSP1137-20121227|2331_1 276 DGVALSANgAEQQLSADIVVWTAGSKpSGLAASLGV 311
                 344444531466899999999998542666666655 PP

>> TIGR00275  TIGR00275: flavoprotein, HI0933 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.0      0.22        50       2      31 ..      56      90 ..      55      93 .. 0.74
   2 ?    3.0   0.0     0.035       8.1     107     162 ..     110     168 ..     103     180 .. 0.82
   3 !    5.2   0.0    0.0074       1.7     113     160 ..     254     301 ..     242     317 .. 0.86

  Alignments for each domain:
  == domain 1    score: 0.4 bits;  conditional E-value: 0.22
   TIGR00275  2 iiiGgGaaGlmaAitaae.....egakVlllEknk 31
                 ++GgG  Gl++A+++++      + +++l++k++
  MMETSP1137-20121227|2331_1 56 CVLGGGFGGLYTALKLSKldwgtCKPRITLVDKHD 90
                799***********999865544455677777766 PP

  == domain 2    score: 3.0 bits;  conditional E-value: 0.035
   TIGR00275 107 svldaLlkelkelgvevlteskvksikkeeekfevet...ekkeleakkvilatGgk.sy 162
                 +v  ++++ l+ +gv++l + +v  +++e + ++v t    +++l +++ +la G++ sy
  MMETSP1137-20121227|2331_1 110 EVAPMFEEVLNGSGVQFL-QGDVXRLDRESKLITVATgdeXSRQLPYNQCVLALGSEvSY 168
                 788999*********985.6799***999*******98655778999********95244 PP

  == domain 3    score: 5.2 bits;  conditional E-value: 0.0074
   TIGR00275 113 lkelkelgvevlteskvksikkeeekfevetekkeleakkvilatGgk 160
                 +++l+++gv+vl++s+v  ++++   ++ +  +++l+a+ v+ + G+k
  MMETSP1137-20121227|2331_1 254 TQRLRSSGVKVLLDSSVARVTEDGVALSANGAEQQLSADIVVWTAGSK 301
                 57899***************99888888888999********999995 PP

>> TIGR00562  proto_IX_ox: protoporphyrinogen oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   0.0   0.00038     0.088       2      38 ..      52      91 ..      51      93 .. 0.92
   2 ?   -1.4   0.0      0.62   1.4e+02       4      37 ..     205     239 ..     204     242 .. 0.85
   3 ?   -2.7   0.0       1.6   3.6e+02     237     285 ..     254     301 ..     239     306 .. 0.75

  Alignments for each domain:
  == domain 1    score: 9.2 bits;  conditional E-value: 0.00038
   TIGR00562  2 kkkvvvvGgGisGLciayalekerp...dvelvlvEakdR 38
                ++++ v+GgG  GL +a  l+k+     ++ ++lv+++dR
  MMETSP1137-20121227|2331_1 52 REDICVLGGGFGGLYTALKLSKLDWgtcKPRITLVDKHDR 91
                6899******************97788899********99 PP

  == domain 2    score: -1.4 bits;  conditional E-value: 0.62
   TIGR00562   4 kvvvvGgGisGLciayalekerp.dvelvlvEakd 37 
                  vvvvGg   G+ +a  l+     +v+l+lv  +d
  MMETSP1137-20121227|2331_1 205 RVVVVGGSYIGVELAANLREWLGdKVDLTLVHRSD 239
                 59************999988766699999998776 PP

  == domain 3    score: -2.7 bits;  conditional E-value: 1.6
   TIGR00562 237 ekrlkekkvkvvkgekvtklekrganetleakdG.vkvetdsvvltvpak 285
                 ++rl++  vkv   + v ++ + g ++   a+   +++ +d vv t+ +k
  MMETSP1137-20121227|2331_1 254 TQRLRSSGVKVLLDSSVARVTEDGVAL--SANGAeQQLSADIVVWTAGSK 301
                 468998889999999999999999944..444444678888888887665 PP

>> TIGR03315  Se_ygfK: putative selenate reductase, YgfK subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   0.0   0.00023     0.053     762     834 ..     288     367 ..     275     382 .. 0.77

  Alignments for each domain:
  == domain 1    score: 8.7 bits;  conditional E-value: 0.00023
   TIGR03315 762 eleadaviaavGeqvdtellkklgieldekgkvvvneetketsvtnvfviGdakk.....G...Pativeaiadgrkaaka 834
                 +l ad v+ + G +  ++l   lg+e+d+kg+vvv+++ +    ++v+  Gd+       G   P+t  +a+ +++ aa +
  MMETSP1137-20121227|2331_1 288 QLSADIVVWTAGSK-PSGLAASLGVEVDAKGRVVVDSALRVCGCDDVHALGDVASindasGasvPSTAQSAMQQAEXAAWN 367
                 68899999999976.578999*******************************86322222223366666666666666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (454 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       125  (0.0304729); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                        24  (0.0058508); expected 4.1 (0.001)
Passed Fwd filter:                        18  (0.0043881); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              18  [number of targets reported over threshold]
# CPU time: 0.58u 0.16s 00:00:00.74 Elapsed: 00:00:00.55
# Mc/sec: 1089.51
//
Query:       MMETSP1137-20121227|2332_1  [L=132]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (132 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        40  (0.00975134); expected 82.0 (0.02)
Passed bias filter:                       34  (0.00828864); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.16s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 600.78
//
Query:       MMETSP1137-20121227|2333_1  [L=142]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (142 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        60  (0.014627); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.15s 00:00:00.30 Elapsed: 00:00:00.33
# Mc/sec: 567.95
//
Query:       MMETSP1137-20121227|2335_1  [L=570]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.9e-10   38.0   0.0      5e-10   36.6   0.0    1.7  2  TIGR00147 TIGR00147: lipid kinase, YegS/Rv2252/BmrU family
    1.4e-06   25.4   0.0    0.00012   19.1   0.0    2.6  3  TIGR03702 lip_kinase_YegS: lipid kinase YegS


Domain annotation for each model (and alignments):
>> TIGR00147  TIGR00147: lipid kinase, YegS/Rv2252/BmrU family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.6   0.0   2.4e-13     5e-10       8     102 ..     105     200 ..      99     230 .. 0.84
   2 ?   -3.7   0.0      0.48   9.9e+02     261     284 ..     520     543 ..     506     547 .. 0.74

  Alignments for each domain:
  == domain 1    score: 36.6 bits;  conditional E-value: 2.4e-13
   TIGR00147   8 lnptagkknikkalkevlkelekek.vevrvklTkkkGdaaravkeaaerkvdtvivlGGDGTinevvnalkdlddkPalgilPaGtaNDFsralg 102
                 +n ++g k + k  k     l + k v+  +  T ++ +   a+k+ a  +  +v+v GGDGT      ++ + d +P l+++P+Gt NDFsr+lg
  MMETSP1137-20121227|2335_1 105 VNSKSGGKAGPKLHKMLCDALGDDKvVDLAMMKTDENQNPVNALKRFAGTEGLRVLVCGGDGTCSWLFASMYEADCHPPLAVMPLGTGNDFSRTLG 200
                 67777777777777777777766551577788888888889999999999999*****************************************98 PP

  == domain 2    score: -3.7 bits;  conditional E-value: 0.48
   TIGR00147 261 ietkekiklnlDGEvlgttpfele 284
                 +e  e +++++DGE+  ++p  ++
  MMETSP1137-20121227|2335_1 520 LELLEPLHIQIDGEPWLQQPSFIH 543
                 555666788999999999987765 PP

>> TIGR03702  lip_kinase_YegS: lipid kinase YegS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0      0.14   2.8e+02     204     226 ..     119     141 ..     101     157 .. 0.72
   2 !   19.1   0.0   5.8e-08   0.00012      55      97 ..     158     198 ..     145     211 .. 0.83
   3 !    3.0   0.0    0.0047       9.6     241     272 ..     506     537 ..     471     553 .. 0.72

  Alignments for each domain:
  == domain 1    score: -1.8 bits;  conditional E-value: 0.14
   TIGR03702 204 vlcPealvndGlldvailpaeee 226
                 ++  +al +d ++d+a++ ++e+
  MMETSP1137-20121227|2335_1 119 KMLCDALGDDKVVDLAMMKTDEN 141
                 44448999999999999999654 PP

  == domain 2    score: 19.1 bits;  conditional E-value: 5.8e-08
   TIGR03702  55 tvvagGGdGtlrevaealaearddaapalallPlGtandfata 97 
                  v+  GGdGt + + +++ e  +d +p la++PlGt ndf+++
  MMETSP1137-20121227|2335_1 158 RVLVCGGDGTCSWLFASMYE--ADCHPPLAVMPLGTGNDFSRT 198
                 366789*******9999876..567889************987 PP

  == domain 3    score: 3.0 bits;  conditional E-value: 0.0047
   TIGR03702 241 aeslvvrarlpwleieaaeeltlnldGePleg 272
                 +++l+  a++++l +e  e+l++ +dGeP  +
  MMETSP1137-20121227|2335_1 506 NAHLLRIAQVAELRLELLEPLHIQIDGEPWLQ 537
                 345666799********************654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (570 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        75  (0.0182838); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.37u 0.14s 00:00:00.51 Elapsed: 00:00:00.50
# Mc/sec: 1504.68
//
Query:       MMETSP1137-20121227|2336_1  [L=366]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (366 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        57  (0.0138957); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.12s 00:00:00.38 Elapsed: 00:00:00.37
# Mc/sec: 1305.62
//
Query:       MMETSP1137-20121227|2337_1  [L=74]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (74 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        42  (0.0102389); expected 82.0 (0.02)
Passed bias filter:                       39  (0.00950756); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.14s 00:00:00.28 Elapsed: 00:00:00.40
# Mc/sec: 244.18
//
Query:       MMETSP1137-20121227|2338_1  [L=249]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (249 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        75  (0.0182838); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.16s 00:00:00.39 Elapsed: 00:00:00.39
# Mc/sec: 842.70
//
Query:       MMETSP1137-20121227|2339_1  [L=127]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (127 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        69  (0.0168211); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.17s 00:00:00.33 Elapsed: 00:00:00.39
# Mc/sec: 429.81
//
Query:       MMETSP1137-20121227|2340_1  [L=155]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (155 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       109  (0.0265724); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.13s 00:00:00.30 Elapsed: 00:00:00.39
# Mc/sec: 524.57
//
Query:       MMETSP1137-20121227|2341_1  [L=246]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (246 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       176  (0.0429059); expected 82.0 (0.02)
Passed bias filter:                      105  (0.0255973); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.15s 00:00:00.39 Elapsed: 00:00:00.55
# Mc/sec: 590.35
//
Query:       MMETSP1137-20121227|2342_1  [L=214]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.01   13.0   0.7      0.013   12.7   0.5    1.1  1  TIGR02783 TrbL_P: P-type conjugative transfer protein TrbL


Domain annotation for each model (and alignments):
>> TIGR02783  TrbL_P: P-type conjugative transfer protein TrbL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.5   3.2e-06     0.013      74     188 ..      28     158 ..      19     168 .. 0.76

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 3.2e-06
   TIGR02783  74 flldnatalikaiinslaqigakalglsas.lsPgniveealdiaskvldaas....sifs.........pislivvlllalvivlvfaliavellvvlveaylvilagvillgfgglr...wTreyalsyl 188
                 +l+ +a+a+++    + + +  +++  s+s ++P++++++a  +  + l +++    +  s         +i     +++ + +++++ ++   +l+   e+ +v++  ++l+g+ gl+   wT+ y+ ++ 
  MMETSP1137-20121227|2342_1  28 MLVGHAAAWSPTSAMASRSAVIGSGR-SSSfARPSHLATQAQTALPRGLRSGHivacDQKStenkipfilDIGTKGGVVFYTFVGIILPFLVYSFLLDTLEMDVVTAGNIVLVGYVGLSivaWTASYVFRVA 158
                 56778888887765555553444444.444499*******9999977788888444422226667776667777788899999******************************9999754449**9998875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (214 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       155  (0.0377864); expected 82.0 (0.02)
Passed bias filter:                      109  (0.0265724); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.21u 0.12s 00:00:00.32 Elapsed: 00:00:00.40
# Mc/sec: 706.14
//
Query:       MMETSP1137-20121227|2343_1  [L=292]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00015   19.6   0.0    0.00034   18.5   0.0    1.5  2  TIGR00527 gcvH: glycine cleavage system H protein
     0.0021   16.0   0.0     0.0034   15.3   0.0    1.3  1  TIGR03077 not_gcvH: glycine cleavage protein H-like protein


Domain annotation for each model (and alignments):
>> TIGR00527  gcvH: glycine cleavage system H protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.1   0.0       1.7   3.4e+03       9      28 ..      53      72 ..      51      72 .. 0.83
   2 !   18.5   0.0   1.7e-07   0.00034      67     105 ..     131     168 ..     116     181 .. 0.83

  Alignments for each domain:
  == domain 1    score: -4.1 bits;  conditional E-value: 1.7
   TIGR00527  9 skehewvrvegdktatvGit 28
                +++h+ ++v++++   +Gi+
  MMETSP1137-20121227|2343_1 53 TSNHQTLHVHSNGLCLLGIS 72
                67899999999999888885 PP

  == domain 2    score: 18.5 bits;  conditional E-value: 1.7e-07
   TIGR00527  67 elyaPvdGtvvevnealedsPelvnedPygegWlikvkl 105
                  +ya v G v+e+n  l d+Pel+  +P g g+l+++ +
  MMETSP1137-20121227|2343_1 131 VVYACVRGSVIEINRRLLDNPELLG-SPSGAGYLLVLAP 168
                 58*********************96.6999999998865 PP

>> TIGR03077  not_gcvH: glycine cleavage protein H-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   1.7e-06    0.0034      54     102 ..     124     173 ..     109     178 .. 0.83

  Alignments for each domain:
  == domain 1    score: 15.3 bits;  conditional E-value: 1.7e-06
   TIGR03077  54 essksaievlspvsgevievnlalkddiqkinesaeeegwlvvv..klded 102
                  s  s+  v + v g vie+n  l d+++ +  s+ + g+l+v+  klde+
  MMETSP1137-20121227|2343_1 124 VSDGSTFVVYACVRGSVIEINRRLLDNPELL-GSPSGAGYLLVLapKLDEK 173
                 4667889999*****************9987.5899*****9984456665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (292 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        39  (0.00950756); expected 82.0 (0.02)
Passed bias filter:                       38  (0.00926377); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.23u 0.14s 00:00:00.37 Elapsed: 00:00:00.28
# Mc/sec: 1328.99
//
Query:       MMETSP1137-20121227|2344_1  [L=426]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (426 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       102  (0.0248659); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.15s 00:00:00.44 Elapsed: 00:00:00.32
# Mc/sec: 1757.10
//
Query:       MMETSP1137-20121227|2346_1  [L=65]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (65 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        40  (0.00975134); expected 82.0 (0.02)
Passed bias filter:                       39  (0.00950756); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.17s 00:00:00.28 Elapsed: 00:00:00.26
# Mc/sec: 329.97
//
Query:       MMETSP1137-20121227|2347_1  [L=125]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (125 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        97  (0.023647); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.14s 00:00:00.30 Elapsed: 00:00:00.31
# Mc/sec: 532.21
//
Query:       MMETSP1137-20121227|2348_1  [L=662]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.1e-23   81.6  20.7    7.5e-15   52.5   8.3    2.2  2  TIGR00797 matE: MATE efflux family protein


Domain annotation for each model (and alignments):
>> TIGR00797  matE: MATE efflux family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.4   1.0     6e-13   2.5e-09      17     118 ..     133     236 ..     110     252 .. 0.92
   2 !   52.5   8.3   1.8e-18   7.5e-15     241     396 .]     388     545 ..     374     545 .. 0.92

  Alignments for each domain:
  == domain 1    score: 34.4 bits;  conditional E-value: 6e-13
   TIGR00797  17 tafvGhlg.pveLaavglg.slvlmvliiillglltattalvaqavGagnqqrlsrsasqslllalllgllvavvlifaakpllslmgadeevaelaqeYlril 118
                  a vGh    v++aa g+g +  ++   ++l g + ++t+l++qa Ga+n++r+++ + + +l+  l+ l +++ ++++a  +ls  g + ++ ela ++  + 
  MMETSP1137-20121227|2348_1 133 LAAVGHFCdGVSVAATGVGiMYSNFCGNMLLKGSAFGSTPLLSQAFGASNHARIGQLLHRMMLIHALVVLCITLPFTLLAFRILSSTGQPRQISELAADFXLVA 236
                 6889998779*********9999***************************************************************************997665 PP

  == domain 2    score: 52.5 bits;  conditional E-value: 1.8e-18
   TIGR00797 241 varlGstalAahqvalqvesllfmlafGlaiAvsalvGqalGagdpkrakevarvalklglllglvlaiililfrefiarlftkdpevlelaaillifvaltqpsdala.fvldGvlrGagdt.kvaaivtvvsawviglpllfllglvtglglkglw 396
                 +a+   + l a  +a++v    f+  fG+++A+  ++G+ lGag+  +a+  arva+ l  l++  la++l++ r+ ia+ f ++p v+el+a+l+ +++++  ++ +     + +++G+g + +v+a++++v++++ig+pl+ ++++ +++g +glw
  MMETSP1137-20121227|2348_1 388 AAEASCAPLEAVPIATTVLVCQFLCTFGFGLAACNRIGNLLGAGRSVEARCCARVAVALIALIAASLATVLVSLRHAIAGSFVDEPHVVELTASLMRMTIMYAALANMGpGCAQQIFFGVGASlRVPAAINTVAFFIIGIPLGAVFAFELDFGVVGLW 545
                 555566678889999**********************************************************************************999998877665268899******87479******************************** PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (662 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       199  (0.0485129); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.15s 00:00:00.56 Elapsed: 00:00:00.51
# Mc/sec: 1713.27
//
Query:       MMETSP1137-20121227|2349_1  [L=165]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (165 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       180  (0.043881); expected 82.0 (0.02)
Passed bias filter:                      179  (0.0436373); expected 82.0 (0.02)
Passed Vit filter:                        21  (0.00511945); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.15s 00:00:00.37 Elapsed: 00:00:00.51
# Mc/sec: 427.02
//
Query:       MMETSP1137-20121227|2350_1  [L=334]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.1e-06   23.3   2.2     0.0078   13.3   0.0    2.1  2  TIGR00601 rad23: UV excision repair protein Rad23
    0.00046   17.4   0.2     0.0007   16.8   0.1    1.3  1  TIGR01304 IMP_DH_rel_2: IMP dehydrogenase family protein


Domain annotation for each model (and alignments):
>> TIGR00601  rad23: UV excision repair protein Rad23
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   0.0   3.8e-06    0.0078     144     194 ..     117     167 ..     105     204 .. 0.79
   2 !    8.1   1.6   0.00014       0.3     159     251 ..     203     300 ..     177     309 .. 0.69

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 3.8e-06
   TIGR00601 144 gdsdretlvvGsereetveeimemGyereeverAlRAafnnPdRAveYLlt 194
                 ++  r+ lv G e +  + ++++mG+  +e  +Al A   + +RAv  +l 
  MMETSP1137-20121227|2350_1 117 AEKLRQKLVLGPEDDGKIAQLLSMGFGSHESRAALLACAKDQNRAVARVLK 167
                 455677999999999999999999999999999999999999999987665 PP

  == domain 2    score: 8.1 bits;  conditional E-value: 0.00014
   TIGR00601 159 etveeimemGyereeverAlRAafnnPdRAveYLltGiPedleaaepaaaeqpseaaaste....tpqeddvaaaaaqaeteeaateaas.Gedplef 251
                 e+v  + ++Gy r     AlR a n+ d A   L +   +d  +   +a+eq+  a +  +    ++++d+ a a + a++e++ +e    G+++le+
  MMETSP1137-20121227|2350_1 203 EAVAMLESIGYARVLAAEALRRADNDADAALTLLSSAQTQDDLQLAIIAREQSAAACTDFDmhpeSASSDATAVASSAAQPENGYSENEVrGDEALEL 300
                 466677789***********************999999999888777777776666554331000222222222222234666666665558888887 PP

>> TIGR01304  IMP_DH_rel_2: IMP dehydrogenase family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.1   3.4e-07    0.0007      18     100 ..     162     246 ..     146     285 .. 0.88

  Alignments for each domain:
  == domain 1    score: 16.8 bits;  conditional E-value: 3.4e-07
   TIGR01304  18 iavvpsrrtrdskdvdtawkidayrfelPvlaspmdalvspelaielgelGglGvlnleGlitrhedleelldkilevaked..e 100
                 +a v  rr+   +  d + + d +r el  + +p+ a+v++e +  l  +G   vl +e l    +d +++l  + +++++d  +
  MMETSP1137-20121227|2350_1 162 VARVLKRRADRQAALDAKRQQDKLRKELRAFXTPSGAVVNAEAVAMLESIGYARVLAAEALRRADNDADAALTLLSSAQTQDdlQ 246
                 566778999999999**********************************************************999999988441 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (334 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       218  (0.0531448); expected 82.0 (0.02)
Passed bias filter:                       98  (0.0238908); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.29u 0.14s 00:00:00.43 Elapsed: 00:00:00.40
# Mc/sec: 1102.11
//
Query:       MMETSP1137-20121227|2351_1  [L=435]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.056   10.5   4.8       0.13    9.3   3.1    1.7  1  TIGR00599 rad18: DNA repair protein rad18


Domain annotation for each model (and alignments):
>> TIGR00599  rad18: DNA repair protein rad18
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   3.1   3.1e-05      0.13      29      60 ..     105     139 ..      91     168 .. 0.78

  Alignments for each domain:
  == domain 1    score: 9.3 bits;  conditional E-value: 3.1e-05
   TIGR00599  29 ChvCkdffka..P.vltsCsHtFCslCiRrcLsee 60 
                 C +C +   +  P vlt C+HtFC  C+ +++s +
  MMETSP1137-20121227|2351_1 105 CPICYELIGKhgPvVLTQCAHTFCKGCLLTWMSAQ 139
                 8899998743236369***********99988876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (435 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        77  (0.0187713); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.16s 00:00:00.49 Elapsed: 00:00:00.59
# Mc/sec: 973.14
//
Query:       MMETSP1137-20121227|2352_1  [L=285]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (285 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        61  (0.0148708); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.13s 00:00:00.35 Elapsed: 00:00:00.37
# Mc/sec: 1016.67
//
Query:       MMETSP1137-20121227|2353_1  [L=186]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.083   10.9   0.2      0.083   10.9   0.1    2.2  2  TIGR04073 exo_TIGR04073: putative exosortase-associated protein, TIGR04073 family


Domain annotation for each model (and alignments):
>> TIGR04073  exo_TIGR04073: putative exosortase-associated protein, TIGR04073 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.1     2e-05     0.083       9      57 ..       5      54 ..       3      60 .. 0.84
   2 ?    0.1   0.5     0.045   1.8e+02      24      49 ..     111     135 ..     101     146 .. 0.64

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 2e-05
   TIGR04073  9 GlaNvatgvlElpkqivlttqeegaaagvtvGllkGvgmtiaRt..lvGvv 57
                G   v+ g+lE p + ++t q+ g   +++  +l+G+g t  Rt  ++Gv+
  MMETSP1137-20121227|2353_1  5 GCGGVMRGFLETPAEFIKTRQQLGFGWQYS-SVLRGLGATCLRTsaVIGVY 54
                6678999*****************997776.69**********84456776 PP

  == domain 2    score: 0.1 bits;  conditional E-value: 0.045
   TIGR04073  24 ivlttqeegaaagvtvGllkGvgmti 49 
                 +v++ +e g a g+ +G+  G+ +++
  MMETSP1137-20121227|2353_1 111 LVKVFREAGIA-GLYAGMGAGLLRAF 135
                 45555555544.77777777766655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (186 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        87  (0.0212092); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.18u 0.14s 00:00:00.32 Elapsed: 00:00:00.35
# Mc/sec: 701.43
//
Query:       MMETSP1137-20121227|2354_1  [L=43]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (43 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        59  (0.0143832); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.30
# Mc/sec: 189.18
//
Query:       MMETSP1137-20121227|2355_1  [L=517]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.4e-05   19.9  23.4    8.4e-05   19.9  16.2    2.4  2  TIGR00950 2A78: carboxylate/amino acid/amine transporter


Domain annotation for each model (and alignments):
>> TIGR00950  2A78: carboxylate/amino acid/amine transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    2.0   1.1    0.0061        25     128     154 ..     191     217 ..     186     245 .. 0.84
   2 !   19.9  16.2     2e-08   8.4e-05      44     263 ..     254     481 ..     218     482 .. 0.78

  Alignments for each domain:
  == domain 1    score: 2.0 bits;  conditional E-value: 0.0061
   TIGR00950 128 aGlllgllsgisfAlgtvlakrlvkke 154
                  G+ ++l+++  +A + vl k+ v  e
  MMETSP1137-20121227|2355_1 191 SGVTAALIAACLMAGYVVLGKQFVGGE 217
                 5999*****************988555 PP

  == domain 2    score: 19.9 bits;  conditional E-value: 2e-08
   TIGR00950  44 krllrllllgalqlgvfyvllflavkkltvaiaalllvlaPlyvtllsdllekervrkkkllAavlalaGivlllsdg..........nlsislaGlllgllsgisfAlgtvlakrlvkkeglellqftgfvvlliGallllpfal..llgpnlqalpatslqwlallyLgligtllayflynkglkevdasaasilalleplvallLgllilgetlslvqliggalilaav 263
                 +    l llg++ + +  + ++  +k +++   a+++ + P++++      + e ++  k +++++ +aG+ l+   g               l Glll+ll   sf    v++k  v+ ++   + ++++ +l++ a  l +++    l +  + l++ s ++ +++y + +g ++ + l +++ k ++a ++s+   lepl+ + +g+l+++e+++l+++ig ++  +++
  MMETSP1137-20121227|2355_1 254 EHRTALHLLGVI-NYINAMGFVWGFKLTSAFLCAVMQLSIPVLTLSYAAWRGDEAMSSNKAASVLVTVAGCGLVTFGGtamgagpgkpPSWKVLVGLLLLLLQCTSFVGLVVVQKPFVAMYP--VPWVVAWSYLVCTAWTLFSALIdgSLLRIGTSLSSPS-GLAIIVYSATLGCVVYFLLIAYASKHLSATTVSVTVSLEPLAVSAIGILFFEEQMQLLEMIGYVVAAVGS 481
                 333334444444.4556666778899999999******************************************999977776666633345679***************************..999999999****999877654112223333333333.55579999******************************************************99876666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (517 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       162  (0.0394929); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.18s 00:00:00.58 Elapsed: 00:00:00.52
# Mc/sec: 1312.28
//
Query:       MMETSP1137-20121227|2356_1  [L=642]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0004   18.1   0.1       0.26    8.9   0.0    3.4  3  TIGR03684 arCOG00985: arCOG04150 universal archaeal PUA-domain protein
  ------ inclusion threshold ------
      0.021   12.7   0.3        1.4    6.8   0.0    3.3  4  TIGR03164 UHCUDC: OHCU decarboxylase


Domain annotation for each model (and alignments):
>> TIGR03684  arCOG00985: arCOG04150 universal archaeal PUA-domain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.9   0.0   0.00013      0.26      55      98 ..     107     150 ..      72     156 .. 0.81
   2 ?    2.0   0.0     0.017        35      62      85 ..     156     179 ..     148     182 .. 0.78
   3 !    3.2   0.0    0.0075        15      61      85 ..     197     221 ..     180     223 .. 0.83

  Alignments for each domain:
  == domain 1    score: 8.9 bits;  conditional E-value: 0.00013
   TIGR03684  55 deeliptlklllelklekkvvvVDeGAvkfiinGAdvmapGive 98 
                 ++   + l+++ +++++   +vVD+GA+  ++   + + pG++e
  MMETSP1137-20121227|2356_1 107 KKAAAFVLRAVAKHSPQLAQAVVDSGALDSLVGCLEEFDPGVKE 150
                 46677889**********************99999999999987 PP

  == domain 2    score: 2.0 bits;  conditional E-value: 0.017
   TIGR03684  62 lklllelklekkvvvVDeGAvkfi 85 
                 l  + +++ e   +vVD+GAv+ +
  MMETSP1137-20121227|2356_1 156 LGYIARHNGELAQTVVDAGAVPLL 179
                 56677777888999*******876 PP

  == domain 3    score: 3.2 bits;  conditional E-value: 0.0075
   TIGR03684  61 tlklllelklekkvvvVDeGAvkfi 85 
                  l  + ++++e   +vVD GAv ++
  MMETSP1137-20121227|2356_1 197 ALSDICKHSPELAQAVVDGGAVAYL 221
                 567788999999**********987 PP

>> TIGR03164  UHCUDC: OHCU decarboxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0      0.74   1.5e+03      12      32 ..     116     136 ..     108     152 .. 0.76
   2 ?    0.7   0.0     0.052   1.1e+02       8      26 ..     196     214 ..     191     224 .. 0.84
   3 ?    6.8   0.0    0.0007       1.4       5      73 ..     235     303 ..     232     316 .. 0.90
   4 ?   -0.2   0.0       0.1   2.1e+02       9      57 ..     366     416 ..     360     424 .. 0.79

  Alignments for each domain:
  == domain 1    score: -3.0 bits;  conditional E-value: 0.74
   TIGR03164  12 difEhspwvaeraaaqrpfds 32 
                  +  hsp +a+ ++++ + ds
  MMETSP1137-20121227|2356_1 116 AVAKHSPQLAQAVVDSGALDS 136
                 577899999998888766665 PP

  == domain 2    score: 0.7 bits;  conditional E-value: 0.052
   TIGR03164   8 aalgdifEhspwvaeraaa 26 
                 +al+di  hsp++a+ +++
  MMETSP1137-20121227|2356_1 196 SALSDICKHSPELAQAVVD 214
                 6899**********99887 PP

  == domain 3    score: 6.8 bits;  conditional E-value: 0.0007
   TIGR03164   5 dfvaalgdifEhspwvaeraaaqrpfdsiedlhaalveaveaaekeeqlaliraHPdLagklavagelt 73 
                 +  + l++i  hs  +ae +++++ f +i +l + +   v++  +   +++ +  P+La     ag ++
  MMETSP1137-20121227|2356_1 235 QVCSCLAQITKHSVDLAEVVVEAEIFPQILNLLKDVDVYVRKNAATCIREVAKHTPELAQLIVNAGGVG 303
                 567789****************************************99*****99****9877777665 PP

  == domain 4    score: -0.2 bits;  conditional E-value: 0.1
   TIGR03164   9 algdifEhspwvaeraaa..qrpfdsiedlhaalveaveaaekeeqlalir 57 
                  lg+i  hsp  a+  a+  + p+  +  lh+a +e +++  k+   a+i 
  MMETSP1137-20121227|2356_1 366 SLGQIGRHSPDHAKALADanALPKLLAVYLHEASSEDLKTKAKRALKAIIA 416
                 5899999******99999555566677789999999998888877777775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (642 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       158  (0.0385178); expected 82.0 (0.02)
Passed bias filter:                      119  (0.0290102); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.17s 00:00:00.63 Elapsed: 00:00:00.45
# Mc/sec: 1883.04
//
Query:       MMETSP1137-20121227|2357_1  [L=256]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.4e-10   37.2   0.0    2.8e-10   36.9   0.0    1.0  1  TIGR01243 CDC48: AAA family ATPase, CDC48 subfamily


Domain annotation for each model (and alignments):
>> TIGR01243  CDC48: AAA family ATPase, CDC48 subfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.9   0.0   6.9e-14   2.8e-10       4     161 ..      85     245 ..      82     254 .. 0.86

  Alignments for each domain:
  == domain 1    score: 36.9 bits;  conditional E-value: 6.9e-14
   TIGR01243   4 lrvaeaykrdvgrgivridrrtaeelgvepgdvveiekgerkavaivyrsflddkgkgiirldgylrknagvaigdrvkvkrae.vkeakkvvlaptqkirlgrdfedfvkekl.....lgkvlskgekvvvsvlegelklvvvsttpagivrvteatevelke 161
                 l v ea++ d    +  + + +aeelg+ +gd+++++ g+r   ++ + +  ++   g i +    r n+ v++gd++k+ r++ vk+  +v l+p ++ + g + e+++ + +       ++l++ +k+ ++     +++ vv+  p+      ++te e+ +
  MMETSP1137-20121227|2357_1  85 LVVEEALDSDS--SVCSVHPDKAEELGLLAGDIIRLK-GKRDRETLCFLKEDEEVPVGSIFITSETRGNLHVTLGDTIKIYRCDnVKPGTQVTLSPLDDAMAGLSCEELLEQVVkphfeQERPLCRDNKIRLQHGSQMVEFKVVELEPSYRCLAGSTTEFEVSD 245
                 66788887775..5778889999*************9.99999999999999999***************************988*************999988777665544421112579*********9999999***********999999999999965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (256 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        98  (0.0238908); expected 82.0 (0.02)
Passed bias filter:                       97  (0.023647); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.28u 0.15s 00:00:00.43 Elapsed: 00:00:00.27
# Mc/sec: 1251.45
//
Query:       MMETSP1137-20121227|2358_1  [L=121]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (121 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       153  (0.0372989); expected 82.0 (0.02)
Passed bias filter:                      112  (0.0273038); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.16s 00:00:00.33 Elapsed: 00:00:00.26
# Mc/sec: 614.26
//
Query:       MMETSP1137-20121227|2359_1  [L=252]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (252 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        59  (0.0143832); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.18s 00:00:00.39 Elapsed: 00:00:00.34
# Mc/sec: 978.27
//
Query:       MMETSP1137-20121227|2360_1  [L=389]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (389 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        72  (0.0175524); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.17s 00:00:00.45 Elapsed: 00:00:00.40
# Mc/sec: 1283.59
//
Query:       MMETSP1137-20121227|2361_1  [L=159]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (159 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        81  (0.0197465); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.17s 00:00:00.36 Elapsed: 00:00:00.38
# Mc/sec: 552.27
//
Query:       MMETSP1137-20121227|2362_1  [L=328]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (328 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       124  (0.0302292); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.17s 00:00:00.41 Elapsed: 00:00:00.56
# Mc/sec: 773.08
//
Query:       MMETSP1137-20121227|2363_1  [L=347]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (347 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       224  (0.0546075); expected 82.0 (0.02)
Passed bias filter:                      125  (0.0304729); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.17s 00:00:00.50 Elapsed: 00:00:00.44
# Mc/sec: 1040.91
//
Query:       MMETSP1137-20121227|2364_1  [L=173]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (173 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        38  (0.00926377); expected 82.0 (0.02)
Passed bias filter:                       36  (0.00877621); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.13s 00:00:00.29 Elapsed: 00:00:00.28
# Mc/sec: 787.38
//
Query:       MMETSP1137-20121227|2365_1  [L=101]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        54  (0.0131643); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.15s 00:00:00.27 Elapsed: 00:00:00.30
# Mc/sec: 444.36
//
Query:       MMETSP1137-20121227|2367_1  [L=276]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (276 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        75  (0.0182838); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.13s 00:00:00.35 Elapsed: 00:00:00.44
# Mc/sec: 827.93
//
Query:       MMETSP1137-20121227|2368_1  [L=94]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (94 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        74  (0.01804); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.15s 00:00:00.27 Elapsed: 00:00:00.37
# Mc/sec: 335.32
//
Query:       MMETSP1137-20121227|2369_1  [L=725]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (725 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        90  (0.0219405); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.17s 00:00:00.61 Elapsed: 00:00:00.50
# Mc/sec: 1913.84
//
Query:       MMETSP1137-20121227|2370_1  [L=275]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (275 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       107  (0.0260848); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.18s 00:00:00.42 Elapsed: 00:00:00.38
# Mc/sec: 955.18
//
Query:       MMETSP1137-20121227|2371_1  [L=294]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0009   16.8   3.0          4    5.2   0.1    4.6  4  TIGR02167 Liste_lipo_26: bacterial surface protein 26-residue repeat


Domain annotation for each model (and alignments):
>> TIGR02167  Liste_lipo_26: bacterial surface protein 26-residue repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0     0.081   3.3e+02       4      12 ..       8      16 ..       7      17 .. 0.83
   2 !    2.7   0.0    0.0056        23       5      14 ..     104     113 ..     103     114 .. 0.86
   3 !    5.1   0.1     0.001       4.2       7      15 ..     134     142 ..     133     142 .. 0.92
   4 !    5.2   0.1   0.00098         4       4      15 ..     188     199 ..     187     199 .. 0.83

  Alignments for each domain:
  == domain 1    score: -1.0 bits;  conditional E-value: 0.081
   TIGR02167  4 gCssLtsLD 12
                ++++L+sL 
  MMETSP1137-20121227|2371_1  8 SNTALESLT 16
                799****95 PP

  == domain 2    score: 2.7 bits;  conditional E-value: 0.0056
   TIGR02167   5 CssLtsLDlS 14 
                 + +Lts+D S
  MMETSP1137-20121227|2371_1 104 NQALTSIDFS 113
                 679*****99 PP

  == domain 3    score: 5.1 bits;  conditional E-value: 0.001
   TIGR02167   7 sLtsLDlSn 15 
                 +L+s+DlSn
  MMETSP1137-20121227|2371_1 134 ALKSIDLSN 142
                 8*******9 PP

  == domain 4    score: 5.2 bits;  conditional E-value: 0.00098
   TIGR02167   4 gCssLtsLDlSn 15 
                 g+  LtsLDlS+
  MMETSP1137-20121227|2371_1 188 GNQTLTSLDLSG 199
                 6778******95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (294 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       106  (0.0258411); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.23u 0.16s 00:00:00.39 Elapsed: 00:00:00.36
# Mc/sec: 1077.91
//
Query:       MMETSP1137-20121227|2373_1  [L=264]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (264 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        90  (0.0219405); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.14s 00:00:00.35 Elapsed: 00:00:00.35
# Mc/sec: 995.57
//
Query:       MMETSP1137-20121227|2374_1  [L=208]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (208 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       189  (0.0460751); expected 82.0 (0.02)
Passed bias filter:                      105  (0.0255973); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.12s 00:00:00.32 Elapsed: 00:00:00.32
# Mc/sec: 857.93
//
Query:       MMETSP1137-20121227|2375_1  [L=1004]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.3e-09   32.5 140.0    1.2e-05   21.1  44.1    3.0  2  TIGR02168 SMC_prok_B: chromosome segregation protein SMC
  ------ inclusion threshold ------
      0.015   10.8 131.3      0.011   11.2  49.2    2.9  3  TIGR02169 SMC_prok_A: chromosome segregation protein SMC


Domain annotation for each model (and alignments):
>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6  37.5   1.3e-07   0.00027     686     913 ..     228     458 ..     223     487 .. 0.81
   2 !   21.1  44.1   5.9e-09   1.2e-05     697     964 ..     467     735 ..     464     748 .. 0.90

  Alignments for each domain:
  == domain 1    score: 16.6 bits;  conditional E-value: 1.3e-07
   TIGR02168 686 eeieeleekiaelekelkelekeleeleeeleklrkeleelerklselkkelerlekeveqleerlaqlekeleeleeereeleeeleeaeeelkeaeeeieeleaeieqlkeelkalrealseleaeltelkeeaaekeerleslekeia...alekeleeleeqieeleeeiesleaeieeleeeleeleeeleellkekasleealaelreeleelseelrelekkvk 913
                 ++ +++ ++  +l +e+++l+++l + + +l++l+++l e++  +++  +++er ++e+++lee+++++ ++++ +e er++l++e+  ae++ ++ +++ie+l++ + +  e l ++r++ +++++e+++l+e+++  + +l+  +++++   + e  lee+++q++el++++es  +  ++le++l+++e++ ++l++++++l  +lae re+  e++eel e++++++
  MMETSP1137-20121227|2375_1 228 QKYQQARKEHLALMAEADALRTQLATDQPKLAQLQRRLAEESAGIAQIIAHAERNRSEHKKLEEMYEDQMQTQQAMERERKQLRAEVWRAEQAQAKLKAKIERLKQVAGRSCETLREERKSATSVRDEHQALQEQFSLMQVELQIARDDKSaavDNEALLEEARAQHAELNKRLESELHDRKTLETALATHEQTEKQLKEDYDQLLVRLAESREATIEAQEELSETSHRLE 458
                 67788888899999*************************************************************************************************************************998887777665554411155667788888888888888888888888888888888888888888887777777777777777777666665543 PP

  == domain 2    score: 21.1 bits;  conditional E-value: 5.9e-09
   TIGR02168 697 elekelkelekeleeleeeleklrkeleelerklselkkelerlekeveqleerlaqlekeleeleeereeleeeleeaeeel.keaeeeieeleaeieqlkeelkalrealseleaeltelkeeaaekeerleslekeiaalekeleeleeqieeleeeiesleaeieeleeeleeleeeleellkekasleealaelreeleelseelrelekkvkelereleelreklaqlelrleeleveiaelqerlseeyeleleeaeeleek 964
                 e ek+ +++ ++ e++++el+ + ++ +e+   ++++  e+++l +e e+l+++ ++l+k+ e+l ++ + +e+  +e+ee+l +e++  +e+  ++ ++ +ee+k lr+ l++++++++ + +e ++++e +es++++++++e+++eel++q eel+  +e+++++++++e++ ++++ee++  +++  ++++++++ ++++ e+++el+  +k++ +l++ l++++++  ++++r+ el  e a+l+e++ ++++   ee +  +ek
  MMETSP1137-20121227|2375_1 467 EEEKKYQAACEKMEAYQSELKIISDAYHEEVSFVNAKVVEMRTLAQEKEELKRKTEDLQKATEDLMQQCRDQETVAKEKEEKLrQETQMVVERAHEDEQRREEECKHLRSILDSTKRQMQCHVKESESQKEMIESMQEQLEEQEEQFEELDRQVEELKWLVEKMAERLATAEKRVRTQQEEIALSEEQIIQAKREMNATETKYGEAMKELDVERKELLRLRDLLNKTEAEKCKASERVYELAEEKARLLEEAGKQANRFCEEKKLSQEK 735
                 567888999999999999999999999999999999999**************************999999999888888888788899999999999**********************88888888999**************************************************************************************************9999999999999999999999888888777766655553 PP

>> TIGR02169  SMC_prok_A: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0  32.4   5.2e-05      0.11     229     491 ..     226     491 ..     221     499 .. 0.66
   2 ?   11.2  49.2   5.3e-06     0.011     228     518 ..     502     790 ..     494     796 .. 0.84
   3 ?   -2.5  13.9     0.075   1.5e+02     712     835 ..     708     831 ..     698     859 .. 0.59

  Alignments for each domain:
  == domain 1    score: 8.0 bits;  conditional E-value: 5.2e-05
   TIGR02169 229 llkelealekqkekiekelaeleeelekleeeieelekeleeiekkleelnkkieklgeeeqlavkekleelkaeiekleraiaekeeeledaeerlakaeaeidklkeeieelereieeekkereklkeelkelkeeleelraeleevdkeaaelree...lkelkekleklkeelnelkreldrlleelkrleeelaelkaelerieekiaeleeeleelaeeikkaeqkle.qlkedlekaekelrklkeeleklekelseler 491
                 +++++++++k+  ++ +e ++l+ +l+  + ++ +l+++l+e  + ++++ ++ e+    e  ++ e  e+    ++ +er+ ++ + e+ +ae+ +ak++a+i++lk+ +    + ++ee+k  +++ +e ++l+e+ + ++ el+    +  +++++   l+e++ +  +l+++l++   +++ l   l   e+  ++lk++  ++  ++ae  e++ e++ee+++  ++le +    + ++ek++++  e++e++++el+  + 
  MMETSP1137-20121227|2375_1 226 IVQKYQQARKEHLALMAEADALRTQLATDQPKLAQLQRRLAEESAGIAQIIAHAER-NRSEHKKLEEMYEDQMQTQQAMERERKQLRAEVWRAEQAQAKLKAKIERLKQVAGRSCETLREERKSATSVRDEHQALQEQFSLMQVELQIARDDKSAAVDNealLEEARAQHAELNKRLESELHDRKTLETALATHEQTEKQLKEDYDQLLVRLAESREATIEAQEELSETSHRLEgRFLICMGEEEKKYQAACEKMEAYQSELKIISD 491
                 66777777777777777777777777777777777777777777777777777776.455566676666666666666777777777777777777777777787777777777777888888888888887777777777777666443333333222122355566666677777766666666666666666777777777777777777777777777777777777777234455666777777777777777777765544 PP

  == domain 2    score: 11.2 bits;  conditional E-value: 5.3e-06
   TIGR02169 228 lllkelealekqkekiekelaeleeelekleeeieelekeleeiekkleelnkkieklgeeeqlavkekleelkaeiekleraiaekeeeledaeerlakaeaeidklkeeieelereieeekkereklkeelkelkeeleelraeleevdkeaaelreelkelkekleklkeelnelkreldrlleelkrleeelaelkaelerieekiaeleeeleelaeeikkaeqkleqlkedlek.aekelrklkeeleklekelselerelaeleaqakaseeesreskaveevlk 518
                 +++ e+++l ++ke+++++ ++l++  e+l ++  ++e   +e+e+kl++ ++ + + + e+  +  e+ + l++ + +++r+++   +e e  +e ++ +++++++++e+ eel+r++ee k   ek+ e+l+ ++++ ++ ++e++  +++  ++++e+++ ++k  ++ +el+  ++el rl + l+++e+e  ++ + + ++ e++a l ee+ + a++  ++++  ++  + lek      +   e+++++e  ++e++r+ +  e ++ +++ +    k+ +evl+
  MMETSP1137-20121227|2375_1 502 AKVVEMRTLAQEKEELKRKTEDLQKATEDLMQQCRDQETVAKEKEEKLRQETQMVVERAHEDEQRREEECKHLRSILDSTKRQMQCHVKESESQKEMIESMQEQLEEQEEQFEELDRQVEELKWLVEKMAERLATAEKRVRTQQEEIALSEEQIIQAKREMNATETKYGEAMKELDVERKELLRLRDLLNKTEAEKCKASERVYELAEEKARLLEEAGKQANRFCEEKKLSQEKLASLEKdTALMQKSHVEKIAEMETCIKEARRQAEMQEEEKIVAQLAA---KSLQEVLR 790
                 56789999********************************************99999999888899****************************************************************************************************************************************9999998888877776666665544333333333333303333344457788888888888887777766664443333...55555555 PP

  == domain 3    score: -2.5 bits;  conditional E-value: 0.075
   TIGR02169 712 lsdaekkieeiekeleqleeeeeklkerleeleeklseleeeleekkeelkeleaeieeleeklaklkealedleaelseekieeieeelekleee.vsriearleeieaelnklelekelleee 835
                 +++  + +ee+ k++++  ee++ ++e+l+ le++   +++   ek +e+++  +e  ++++++++ ++ +++l a+  +e ++  ee   +l ++    +e  le+++++l++l+ + + l+  
  MMETSP1137-20121227|2375_1 708 AEEKARLLEEAGKQANRFCEEKKLSQEKLASLEKDTALMQKSHVEKIAEMETCIKEA-RRQAEMQEEEKIVAQLAAKSLQEVLRDTEEAFIELAKKpALGVETDLEALDEQLEALDEQLAALRGG 831
                 455556677777888888888888888888888888888888888888888777764.4556666667777777777777777766666555544314456666666666666666333333221 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1004 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       740  (0.1804); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                        32  (0.00780107); expected 4.1 (0.001)
Passed Fwd filter:                        16  (0.00390054); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 2.17u 0.19s 00:00:02.36 Elapsed: 00:00:01.36
# Mc/sec: 974.39
//
Query:       MMETSP1137-20121227|2376_1  [L=147]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (147 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       164  (0.0399805); expected 82.0 (0.02)
Passed bias filter:                      107  (0.0260848); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.14s 00:00:00.31 Elapsed: 00:00:00.53
# Mc/sec: 366.08
//
Query:       MMETSP1137-20121227|2377_1  [L=178]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (178 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        47  (0.0114578); expected 82.0 (0.02)
Passed bias filter:                       37  (0.00901999); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.13s 00:00:00.30 Elapsed: 00:00:00.28
# Mc/sec: 839.07
//
Query:       MMETSP1137-20121227|2378_1  [L=598]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (598 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        73  (0.0177962); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.17s 00:00:00.55 Elapsed: 00:00:00.64
# Mc/sec: 1233.27
//
Query:       MMETSP1137-20121227|2379_1  [L=422]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.4e-82  273.8   0.8    1.8e-73  245.9   0.0    2.0  2  TIGR01327 PGDH: phosphoglycerate dehydrogenase
     0.0019   14.9   0.1     0.0049   13.5   0.0    1.6  2  TIGR00936 ahcY: adenosylhomocysteinase
     0.0065   13.7   0.0      0.018   12.2   0.0    1.7  2  TIGR01771 L-LDH-NAD: L-lactate dehydrogenase


Domain annotation for each model (and alignments):
>> TIGR01327  PGDH: phosphoglycerate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  245.9   0.0   1.3e-76   1.8e-73       1     317 [.      18     343 ..      18     347 .. 0.95
   2 !   28.0   0.1   1.5e-10     2e-07     445     518 ..     343     416 ..     340     421 .. 0.91

  Alignments for each domain:
  == domain 1    score: 245.9 bits;  conditional E-value: 1.3e-76
   TIGR01327   1 kvlvadklseegiellkekelevdvktglskeellekik......dydalivRSatkvteelleaaekLkvigRaGvGvDNidieaatkkGilvvNaPegntisaaElalalllalaRkipqadksvkekkWerkkflGtElygktlGviGlGriGsevakrakalgmkvlayDPyiseekaeklgvellkdldellaeaDvitvHvPltketkgligkeelakmKkgviivNcaRGGiidEkALvealeegkvraaalDvfekEPpt......dnklleldnvvvtpHlgAsteEaqenvavevaeevlealkgevvesavNlpalda 317
                 ++l+ ++++e ++ +++ ++++v+vk  ls +el ++i+       ++a+ vRS+t +t ell++a++L  +g   +G DN  +e a+++ i v NaP +nt s+aEl +  ++al+R++ +  ++ +++ W + +    E+++ktlG+iG G++Gs+v+  a++lgm+v+ +D  + ++ a   +v+ l+++ ell+ ++ +t+HvP+ + t++li + +++ mK+g +++N+aRG ++d +A + a+ +g++++ + Dvf +EP +      ++++  l+nv++tpH+g steEaqe+++vev++ ++++++  ++  +vN p++d 
  MMETSP1137-20121227|2379_1  18 RILLLENIHEVAVRAFEAQGFQVEVKVALSPDELFARIEgtnghePIHAIGVRSKTAMTPELLKKAKRLLCVGCFCIGTDNHALEVAAEQAIPVFNAPFSNTRSVAELIIGQIIALSRQLVDRSTECHNGGWYKVSKGCCEVRAKTLGIIGYGHVGSQVSVLAESLGMRVVYFD--VIPKLALGNAVQ-LSSMAELLSTSNYVTLHVPQLESTRNLITETQINMMKRGSYLLNAARGDVVDIDAFAAAVRSGHLAGGTADVFPQEPKKngdnlfESPMRGLKNVILTPHIGGSTEEAQEAIGVEVSNAIIKFINSGITYGTVNFPEIDI 343
                 68999********************************96333333579**************************************************************************************999999**********************************..445566666788.6779*************************************************************************9999999999999***********************************************986 PP

  == domain 2    score: 28.0 bits;  conditional E-value: 1.5e-10
   TIGR01327 445 vdlepegilliiknkDkpGvigkvgsllgeagiNiasmqlgrkekggealmllslDeevseevleeikevpeik 518
                 +  +p  + l+  +k++pGv++k+ ++l +a++Ni + qlg +e+ g a+ ++ + +e se  l++ike+++  
  MMETSP1137-20121227|2379_1 343 IAQRPGTHRLLNVHKNVPGVLSKINTALCDADVNIVQQQLGTNESIGLATXVVDMASESSELALSKIKELDTSI 416
                 4456788999***********************************************************98765 PP

>> TIGR00936  ahcY: adenosylhomocysteinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0      0.25   3.5e+02      49      96 ..      68     113 ..      53     121 .. 0.76
   2 !   13.5   0.0   3.6e-06    0.0049     205     296 ..     161     253 ..     153     265 .. 0.85

  Alignments for each domain:
  == domain 1    score: -2.4 bits;  conditional E-value: 0.25
   TIGR00936  49 hltvktavLietLkalGaevalascnilstqddvaaalakakgvpvfa 96 
                  +  kta+  e Lk+      + +c  + t +++    a+ + +pvf 
  MMETSP1137-20121227|2379_1  68 GVRSKTAMTPELLKK-AKRLLCVGCFCIGTDNHALEVAAE-QAIPVFN 113
                 566677766665554.456778899999999999988888.6999996 PP

  == domain 2    score: 13.5 bits;  conditional E-value: 3.6e-06
   TIGR00936 205 GktvvvaGyGwvGkGvaerlrGlGarvivtevdpikaleaamdGfevvtmeeaakegdifvta.tGnkdvireehlekmkdgailanaGhfdv 296
                  kt+ ++GyG vG  v+  ++ lG rv+  +v p  al  a++  ++ ++   ++   + v     ++++i+e +++ mk g+ l na   dv
  MMETSP1137-20121227|2379_1 161 AKTLGIIGYGHVGSQVSVLAESLGMRVVYFDVIPKLALGNAVQLSSMAELLSTSNYVTLHVPQlESTRNLITETQINMMKRGSYLLNAARGDV 253
                 578889********************************9998877777777777777777755257899****************99987775 PP

>> TIGR01771  L-LDH-NAD: L-lactate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.2   0.0   1.3e-05     0.018       1      56 [.     166     219 ..     166     251 .. 0.87
   2 ?   -2.3   0.0      0.34   4.6e+02      75     100 ..     344     370 ..     341     395 .. 0.66

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 1.3e-05
   TIGR01771   1 iiGagaVGssvafalltqgladelvliDinedkaegealdlsdaasflkskvkvka 56 
                 iiG g+VGs+v  ++l ++l   +v  D+ ++ a g+a+ ls +a +l+++  v+ 
  MMETSP1137-20121227|2379_1 166 IIGYGHVGSQV--SVLAESLGMRVVYFDVIPKLALGNAVQLSSMAELLSTSNYVTL 219
                 8********96..7899****************************99988766654 PP

  == domain 2    score: -2.3 bits;  conditional E-value: 0.34
   TIGR01771  75 eqkpgetRlelveknvk.ilksivkev 100
                 +q+pg +Rl  v+knv  +l++i + +
  MMETSP1137-20121227|2379_1 344 AQRPGTHRLLNVHKNVPgVLSKINTAL 370
                 577788888777777642455554444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (422 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       187  (0.0455875); expected 82.0 (0.02)
Passed bias filter:                      135  (0.0329108); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.38u 0.19s 00:00:00.57 Elapsed: 00:00:00.44
# Mc/sec: 1265.90
//
Query:       MMETSP1137-20121227|2380_1  [L=344]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (344 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       101  (0.0246221); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.16s 00:00:00.42 Elapsed: 00:00:00.32
# Mc/sec: 1418.88
//
Query:       MMETSP1137-20121227|2381_1  [L=547]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (547 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        83  (0.020234); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.15s 00:00:00.52 Elapsed: 00:00:00.54
# Mc/sec: 1337.00
//
Query:       MMETSP1137-20121227|2382_1  [L=121]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (121 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        69  (0.0168211); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.15s 00:00:00.31 Elapsed: 00:00:00.31
# Mc/sec: 515.18
//
Query:       MMETSP1137-20121227|2383_1  [L=300]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (300 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       136  (0.0331546); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.14s 00:00:00.39 Elapsed: 00:00:00.32
# Mc/sec: 1237.40
//
Query:       MMETSP1137-20121227|2384_1  [L=241]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.6e-79  263.3   0.0    7.4e-79  263.1   0.0    1.0  1  TIGR00468 pheS: phenylalanine--tRNA ligase, alpha subunit
    2.7e-20   70.1   0.0    3.6e-20   69.7   0.0    1.0  1  TIGR00470 sepS: O-phosphoseryl-tRNA(Cys) synthetase
    1.1e-12   45.2   0.3    1.2e-05   22.0   0.0    2.4  3  TIGR00469 pheS_mito: phenylalanine--tRNA ligase
    8.2e-05   19.2   0.0     0.0001   18.9   0.0    1.1  1  TIGR00499 lysS_bact: lysine--tRNA ligase
    0.00024   18.0   0.0    0.00031   17.6   0.0    1.2  1  TIGR00442 hisS: histidine--tRNA ligase
  ------ inclusion threshold ------
      0.013   12.6   0.1       0.28    8.3   0.0    2.0  2  TIGR02367 PylS_Cterm: pyrrolysine--tRNA ligase, C-terminal region
      0.022   12.0   0.0       0.03   11.6   0.0    1.2  1  TIGR00462 genX: EF-P lysine aminoacylase GenX


Domain annotation for each model (and alignments):
>> TIGR00468  pheS: phenylalanine--tRNA ligase, alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  263.1   0.0   1.3e-81   7.4e-79     111     317 ..       1     228 [.       1     237 [. 0.90

  Alignments for each domain:
  == domain 1    score: 263.1 bits;  conditional E-value: 1.3e-81
   TIGR00468 111 PqdHpaRdmqDtFylkd.vad..............avkkaveegketgsrgwryefdeevarkllLRThttavqlraleeee.......nppirifsigrvfRrdavdatHlpeFhQveglvvdknvslknLkglleeflkklfge.tevrfrpsyfPfTepSvEvdvklvegkgWlEvlgaGivrpevlealGiekelkvlafGlgieRlamlkygikdiRdlyendlk 317
                 Pq+HpaRd +DtF++k+                  +  +++ ++++ +s gwry+++ee++rk lLRThttav+ r+l +          +p+++fsi+rvfR++a datHl+eFhQveg v+d+n+sl nL+g++ +f+++l+ e  +++f+p+y+P+Tep +E + +++  k+W+Ev+++Gi+rpe+l+++G++++++v+a+G+++eR +m+kyg+++iR+l+ ++++
  MMETSP1137-20121227|2384_1   1 PQQHPARDAHDTFFVKTpA-StrtlpadylvatheNGGESLPDEYNSKSCGWRYDWSEEESRKNLLRTHTTAVSSRTLYKIAqlakegnFKPQKYFSIDRVFRNEALDATHLAEFHQVEGFVIDRNLSLGNLMGTIADFYRRLGPEfNDLKFKPTYNPYTEP-LEFFSYHPGLKKWVEVGNSGIFRPEMLRPMGFDEDVSVIAWGMSLERPTMIKYGVDNIRTLFGHKVD 228
                 9****************52.346899999998877677788889999*************************6666655443344444569***********************************************************************.9******99888**************************************************99876 PP

>> TIGR00470  sepS: O-phosphoseryl-tRNA(Cys) synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.7   0.0   6.1e-23   3.6e-20     180     340 ..      60     222 ..      56     231 .. 0.85

  Alignments for each domain:
  == domain 1    score: 69.7 bits;  conditional E-value: 6.1e-23
   TIGR00470 180 sstltlrshmtsGwfitlssiadklk....lplklfsidrcfrreqkedasrlmtyfsascvvvdeevsvddGkavaeglleqlG..fekfrfrkdekkskyyipetq.tevyayhpklkewievatfGvyspialak..ydidvevmnlGlGverlamilygyedvrkm 340
                 s +  lr+h t+    tl +ia+  k     p k fsidr fr e   da++l  ++     v+d+++s+ +       + ++lG  f+ ++f++       y p t+  e ++yhp lk+w+ev   G++ p  l    +d dv v+  G+ +er +mi yg +++r +
  MMETSP1137-20121227|2384_1  60 SRKNLLRTHTTAVSSRTLYKIAQLAKegnfKPQKYFSIDRVFRNEA-LDATHLAEFHQVEGFVIDRNLSLGNLMGTIADFYRRLGpeFNDLKFKPT------YNPYTEpLEFFSYHPGLKKWVEVGNSGIFRPEMLRPmgFDEDVSVIAWGMSLERPTMIKYGVDNIRTL 222
                 66778999999998888888876554223369**********9986.69*********************99998888999***977888999885......77777636*************************976126667889999******************87 PP

>> TIGR00469  pheS_mito: phenylalanine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0      0.51     3e+02      84     102 ..       1      19 [.       1      37 [. 0.81
   2 !   21.0   0.0     4e-08   2.4e-05     100     159 ..      61     123 ..      28     128 .. 0.77
   3 !   22.0   0.0   2.1e-08   1.2e-05     260     335 ..     150     225 ..     137     235 .. 0.84

  Alignments for each domain:
  == domain 1    score: -2.4 bits;  conditional E-value: 0.51
   TIGR00469  84 pkdhvsrsksdtyyineth 102
                 p++h++r+  dt+++    
  MMETSP1137-20121227|2384_1   1 PQQHPARDAHDTFFVKTPA 19 
                 889**********997655 PP

  == domain 2    score: 21.0 bits;  conditional E-value: 4e-08
   TIGR00469 100 ethllrahtsaheleliskild..dsdniks.gflvsaevyrrdeidkthypvfhqaegaavr 159
                 ++ llr+ht+a     + ki +  +  n k   ++ +  v+r + +d th   fhq+eg  + 
  MMETSP1137-20121227|2384_1  61 RKNLLRTHTTAVSSRTLYKIAQlaKEGNFKPqKYFSIDRVFRNEALDATHLAEFHQVEGFVID 123
                 468********9998888875422446777515666778*******************98775 PP

  == domain 3    score: 22.0 bits;  conditional E-value: 2.1e-08
   TIGR00469 260 rwvdayfpftapswelevyfkd..ewlellGcGlirqevllraGvkqsetiGyafGlGlerlamllfeipdirllwsr 335
                 ++  +y p+t+p  e+  y+ +  +w+e+   G++r e+l+  G+ +  +   a+G+ ler +m+ + + +ir l+ +
  MMETSP1137-20121227|2384_1 150 KFKPTYNPYTEP-LEFFSYHPGlkKWVEVGNSGIFRPEMLRPMGFDED-VSVIAWGMSLERPTMIKYGVDNIRTLFGH 225
                 45579******9.477777764449********************998.556899******************99865 PP

>> TIGR00499  lysS_bact: lysine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.0   1.8e-07    0.0001     241     270 ..      92     121 ..      88     179 .. 0.76

  Alignments for each domain:
  == domain 1    score: 18.9 bits;  conditional E-value: 1.8e-07
   TIGR00499 241 ekvyEigrvFRnEGvdttHnpEFttiElYq 270
                 +k + i+rvFRnE +d tH +EF  +E + 
  MMETSP1137-20121227|2384_1  92 QKYFSIDRVFRNEALDATHLAEFHQVEGFV 121
                 6889**********************9765 PP

>> TIGR00442  hisS: histidine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.0   5.4e-07   0.00031      63     124 ..      53     118 ..      47     152 .. 0.87

  Alignments for each domain:
  == domain 1    score: 17.6 bits;  conditional E-value: 5.4e-07
   TIGR00442  63 YsfedkggrslaLRpelTapvvRavvenklelkk....pfklyyigpvFRyErpqkGRyRqFhQld 124
                 Y+++++++r+  LR   Ta   R + +  + +k+    p+k+++i++vFR+E   +  + +FhQ++
  MMETSP1137-20121227|2384_1  53 YDWSEEESRKNLLRTHTTAVSSRTLYKIAQLAKEgnfkPQKYFSIDRVFRNEALDATHLAEFHQVE 118
                 88899999999************9988777766666789*************************86 PP

>> TIGR02367  PylS_Cterm: pyrrolysine--tRNA ligase, C-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   0.0   0.00049      0.28      89     130 ..      76     117 ..      65     152 .. 0.85
   2 ?    2.6   0.0     0.027        16     204     232 ..     198     226 ..     170     235 .. 0.73

  Alignments for each domain:
  == domain 1    score: 8.3 bits;  conditional E-value: 0.00049
   TIGR02367  89 nlynllrkldrllekpirifeiGscyrkesdGsehleeftml 130
                 +ly++ +  +    kp + f i   +r e+  + hl ef  +
  MMETSP1137-20121227|2384_1  76 TLYKIAQLAKEGNFKPQKYFSIDRVFRNEALDATHLAEFHQV 117
                 567776666666779************************876 PP

  == domain 2    score: 2.6 bits;  conditional E-value: 0.027
   TIGR02367 204 pwvGlGfGlerllkvredtknvrsaarsl 232
                   +  G+ ler  +++ +++n+r++   +
  MMETSP1137-20121227|2384_1 198 SVIAWGMSLERPTMIKYGVDNIRTLFGHK 226
                 4577899***************9876555 PP

>> TIGR00462  genX: EF-P lysine aminoacylase GenX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   5.2e-05      0.03      74     124 ..      92     144 ..      87     187 .. 0.73

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 5.2e-05
   TIGR00462  74 gkifqlakvfRneergrlHnpEFtmLEwYrvg..adleelmeeveellqevle 124
                 +k f++ +vfRne   ++H  EF+ +E + ++  ++l +lm  ++++ + +  
  MMETSP1137-20121227|2384_1  92 QKYFSIDRVFRNEALDATHLAEFHQVEGFVIDrnLSLGNLMGTIADFYRRLGP 144
                 56799*********************988764115566788887777776665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (241 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        75  (0.0182838); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.25u 0.17s 00:00:00.42 Elapsed: 00:00:00.41
# Mc/sec: 775.84
//
Query:       MMETSP1137-20121227|2385_1  [L=107]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (107 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        42  (0.0102389); expected 82.0 (0.02)
Passed bias filter:                       40  (0.00975134); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.13s 00:00:00.26 Elapsed: 00:00:00.28
# Mc/sec: 504.39
//
Query:       MMETSP1137-20121227|2386_1  [L=561]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (561 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       129  (0.0314481); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.15s 00:00:00.52 Elapsed: 00:00:00.41
# Mc/sec: 1806.00
//
Query:       MMETSP1137-20121227|2387_1  [L=503]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (503 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       124  (0.0302292); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.14s 00:00:00.49 Elapsed: 00:00:00.77
# Mc/sec: 862.21
//
Query:       MMETSP1137-20121227|2388_1  [L=646]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.9e-58  195.9   0.4    5.4e-54  181.2   0.2    3.7  2  TIGR01982 UbiB: 2-polyprenylphenol 6-hydroxylase
     0.0031   14.8   0.1      0.035   11.4   0.0    2.4  3  TIGR03724 arch_bud32: Kae1-associated kinase Bud32
     0.0065   13.5   0.1      0.021   11.8   0.0    1.6  1  TIGR02721 ycfN_thiK: thiamine kinase


Domain annotation for each model (and alignments):
>> TIGR01982  UbiB: 2-polyprenylphenol 6-hydroxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  181.2   0.2   3.9e-57   5.4e-54      45     343 ..     133     438 ..     104     449 .. 0.81
   2 !    7.4   0.0   0.00022      0.31     385     435 ..     529     579 ..     477     580 .. 0.84

  Alignments for each domain:
  == domain 1    score: 181.2 bits;  conditional E-value: 3.9e-57
   TIGR01982  45 keslgerlrlal...eelGPifiKlGQvlstRaDllpeeiaeeLslLqdkvppfdlkaarkvieaelgk.pveelFaefeekPlAaASiaQvhkAvlvegkeVavKvlRPgiekkieadikll...ellak..lvekllpeakr...........lrptevvkefektlkeEldlrlEaanaselkenf..kndkklivPevyweltservltlewidgipvsdleklkeaGldlkalaenlvesflkqvlrdgfFHaDlHpGNilvakdgkiialDfGivgrlseeerrylaeillgflerdykrvaevhleagyvpsdt 343
                 +++  er ++al   ++lGP+fiKl Q ls R+Dl+pe +a eL++Lqd+vppfd ++a++++++elg   ++++Fa+++e+P+AaASi+Qv++ +l++g++Va+Kv+RP i  +i+ d+      + +a   l+ +  ++  r           l  +++v+e  +   +E d+  Ea+n++ +++++  +n + ++ P+v+ e+ +++vl++ew+d +p               +l +  ++  l++ l+ g+ H D+HpGN+l ++dgk+ +lD G+   + ++ ++ l+e +  +  +dy+++ +  +++g++p d+
  MMETSP1137-20121227|2388_1 133 EKNEKERAKEALglaNQLGPTFIKLAQALSIRTDLIPEAYALELRQLQDAVPPFDDAEAKAILARELGVsDLSAVFAQISERPIAAASIGQVYRGKLHDGRDVAIKVQRPAILGEIALDLYXAppaRAAADapLQHREQERDLRankretveddvLLAQRLVDEWGRGFVAEADYLHEAKNTAAFTAAMlrRNLSAVTSPQVITEHSTSKVLVTEWVDVVP---------------RLCAVAINAYLTMLLDTGVLHCDPHPGNLLRTRDGKLCILDWGMALDVPSDLQYSLIEFIAHVNGEDYEAMPQDFVNLGFTPPDQ 438
                 23334444444433379****************************************************99************************************************98752213333311333333222230000111111133445777778888899***************994445678999*******************998...............4666678899**********************************************************************99875 PP

  == domain 2    score: 7.4 bits;  conditional E-value: 0.00022
   TIGR01982 385 levqpeLlLLqKtlltvEGvgrqldpdldlwkvaepvvkklikkklspkak 435
                  +v+p +l + +++ t+EG+g + + d +l++ a p++++ + +  sp+ak
  MMETSP1137-20121227|2388_1 529 FRVPPYILYVTRAFSTLEGIGLSANTDYSLVQEAFPYLSQRLLTDDSPRAK 579
                 579999999*****************************9998888777765 PP

>> TIGR03724  arch_bud32: Kae1-associated kinase Bud32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0      0.92   1.3e+03     129     157 ..     123     151 ..     121     161 .. 0.79
   2 !   11.4   0.0   2.6e-05     0.035      97     136 ..     358     398 ..     303     412 .. 0.83
   3 ?    0.1   0.1     0.075     1e+02      41      70 ..     491     520 ..     468     527 .. 0.79

  Alignments for each domain:
  == domain 1    score: -3.5 bits;  conditional E-value: 0.92
   TIGR03724 129 yliDfGLgkkskevedkavDlhvlkrsle 157
                 +l+D  Lg+++k+ +++a +   l + l 
  MMETSP1137-20121227|2388_1 123 LLLDWRLGQIEKNEKERAKEALGLANQLG 151
                 58999999999999999998877777665 PP

  == domain 2    score: 11.4 bits;  conditional E-value: 2.6e-05
   TIGR03724  97 kevGelvgklHkagivhgDlttsNiiv.kddklyliDfGLg 136
                  ++  ++ +l ++g++h D+++ N++  +d+kl+++D G++
  MMETSP1137-20121227|2388_1 358 VAINAYLTMLLDTGVLHCDPHPGNLLRtRDGKLCILDWGMA 398
                 567778899999************9874799********98 PP

  == domain 3    score: 0.1 bits;  conditional E-value: 0.075
   TIGR03724  41 keRtrkEarllseakkagvntPvvydvdpe 70 
                 k R    a+++++++++gv + +v +v +e
  MMETSP1137-20121227|2388_1 491 KAREEMQAKMTAQLASEGVDVSAVSNVMDE 520
                 458888899999999999999998888665 PP

>> TIGR02721  ycfN_thiK: thiamine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.8   0.0   1.5e-05     0.021     143     198 ..     367     425 ..     354     432 .. 0.74

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 1.5e-05
   TIGR02721 143 plklallHlDvhaeNlvkteqG.lklIDWEYAsd..gDialeLaavlrandeeqqeelv 198
                  l    lH D h +Nl++t +G l ++DW  A d  +D ++ L   + + + e+ e++ 
  MMETSP1137-20121227|2388_1 367 LLDTGVLHCDPHPGNLLRTRDGkLCILDWGMALDvpSDLQYSLIEFIAHVNGEDYEAMP 425
                 567789****************55678***99873346666666555555566666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (646 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       177  (0.0431497); expected 82.0 (0.02)
Passed bias filter:                      137  (0.0333983); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.51u 0.15s 00:00:00.66 Elapsed: 00:00:00.68
# Mc/sec: 1253.90
//
Query:       MMETSP1137-20121227|2389_1  [L=642]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00044   18.2   0.0    0.00094   17.2   0.0    1.5  1  TIGR00229 sensory_box: PAS domain S-box protein
  ------ inclusion threshold ------
      0.019   11.8   0.0      0.038   10.9   0.0    1.4  1  TIGR02040 PpsR-CrtJ: transcriptional regulator PpsR


Domain annotation for each model (and alignments):
>> TIGR00229  sensory_box: PAS domain S-box protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.0   4.6e-07   0.00094       2     116 ..     466     581 ..     465     583 .. 0.83

  Alignments for each domain:
  == domain 1    score: 17.2 bits;  conditional E-value: 4.6e-07
   TIGR00229   2 eseeryrailesspdaiivvdeeGnilyvNrafeeifGYsaeeliGrnvlelipeedreevrerierrle.gerepvseerrvkrkdGseiwvevsv.spird.aggelgvvgivrDI 116
                 ++e++++a++++    i   d   ni+ +++a+ ++  Y+ae++ G+++  +  +   e++ e +++ ++ g+ ++     ++ +++G+ +   ++v  p+rd  g++  ++++  +I
  MMETSP1137-20121227|2389_1 466 AEEKQLQAAADQHVQVITSKDAPFNIVWASQAWLDLCEYTAEQVAGQTLELIQGPRTCEASVEQLMKSIRaGT-SISIDMINY-TSSGKAFSHTLRVxEPLRDsRGERQCFQATSTNI 581
                 689***********************************************97777777777777666666355.777777776.999**99988876368999999998888876665 PP

>> TIGR02040  PpsR-CrtJ: transcriptional regulator PpsR
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   1.8e-05     0.038     236     301 ..     453     517 ..     428     541 .. 0.87

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 1.8e-05
   TIGR02040 236 rlspvgasaavedvlsenlaklveeapDaivvvDadGriksaneaFlelvevsskeavrGrtldrw 301
                 +l +++a ++ +++++++l+   ++ +  i + Da   i  a +a+l+l e ++ e+v G+tl+  
  MMETSP1137-20121227|2389_1 453 KLTHAQAGGQQQSAEEKQLQAAADQHVQVITSKDAPFNIVWASQAWLDLCEYTA-EQVAGQTLELI 517
                 688899999999999999*********************************986.79*****9855 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (642 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       179  (0.0436373); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.25s 00:00:00.64 Elapsed: 00:00:00.97
# Mc/sec: 873.58
//
Query:       MMETSP1137-20121227|2390_1  [L=400]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (400 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        65  (0.0158459); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.18s 00:00:00.44 Elapsed: 00:00:00.32
# Mc/sec: 1649.86
//
Query:       MMETSP1137-20121227|2391_1  [L=777]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (777 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       140  (0.0341297); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.47u 0.19s 00:00:00.65 Elapsed: 00:00:00.51
# Mc/sec: 2010.89
//
Query:       MMETSP1137-20121227|2393_1  [L=314]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-26   91.2   0.0    4.7e-14   50.3   0.0    2.1  2  TIGR02303 HpaG-C-term: 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase, C-terminal subunit
    9.6e-15   52.5   0.0    5.8e-07   27.1   0.0    2.2  2  TIGR02305 HpaG-N-term: 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase, N-terminal subunit


Domain annotation for each model (and alignments):
>> TIGR02303  HpaG-C-term: 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase, C-terminal subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.0   0.0   6.1e-14   1.2e-10      42     136 ..     107     215 ..      75     242 .. 0.74
   2 !   50.3   0.0   2.3e-17   4.7e-14     181     242 ..     242     303 ..     240     306 .. 0.92

  Alignments for each domain:
  == domain 1    score: 39.0 bits;  conditional E-value: 6.1e-14
   TIGR02303  42 pgkifalglnyadhasela.......leppeeplvflkgantllghkgetyrpkd...vef...vhyevelvvvvGktaknvk.redaldyvaGytiandyairdylen 136
                  +k  ++g ny dh sel+       +e + ep++flk+++++    ++   p     v+    v +e el+v++Gk +k  + ++ a++ +aGy +a d + rd  + 
  MMETSP1137-20121227|2393_1 107 GRKAVCIGKNYLDHISELSqlgpewnVEAEAEPVIFLKPTTSYAWPGEPLVLPRSrghVTVkhgVQHELELAVIIGKRVKGERdHQAAMQAIAGYVLAIDVTERDEQTA 215
                 3677899***********9766666567778************988888888875222444113559************977615678****************97654 PP

  == domain 2    score: 50.3 bits;  conditional E-value: 2.3e-17
   TIGR02303 181 qeGntsdmifdvaelieylselmtlepgdliltGtpkGladvkpGdvvrleiegvGklenti 242
                 +eG+  +mi+ v+ li ++s++mtlepgdl++tGtp G+ ++ pGd ++  +eg  +++ ++
  MMETSP1137-20121227|2393_1 242 KEGEDWRMIHGVPALICFISSVMTLEPGDLVVTGTPAGVGKLCPGDNITAGVEGHCEMTVNV 303
                 689999***********************************************988876555 PP

>> TIGR02305  HpaG-N-term: 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase, N-terminal subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.2   0.0   4.2e-09   8.5e-06      31      95 ..     137     208 ..     115     213 .. 0.81
   2 !   27.1   0.0   2.8e-10   5.8e-07     150     202 ..     248     300 ..     240     303 .. 0.91

  Alignments for each domain:
  == domain 1    score: 23.2 bits;  conditional E-value: 4.2e-09
   TIGR02305  31 kkpvlyikpentlnragapialpkg......veklrlgaalalvvgrdasrv.keeeAldyvaGyvlvndvs 95 
                  +pv+++kp+   +  g+p+ lp+       ++ ++ + +la+++g++ +   +++ A++ +aGyvl+ dv+
  MMETSP1137-20121227|2393_1 137 AEPVIFLKPTTSYAWPGEPLVLPRSrghvtvKHGVQHELELAVIIGKRVKGErDHQAAMQAIAGYVLAIDVT 208
                 57*********************97222222234566789********9865156778*********99986 PP

  == domain 2    score: 27.1 bits;  conditional E-value: 2.8e-10
   TIGR02305 150 nlkrsieqLleevsefmtlkaGDvlllGtaeervkvkegdrvrveieelgeLe 202
                 ++++ ++ L+ ++s +mtl++GD++++Gt+    k+ +gd+++  +e+  e++
  MMETSP1137-20121227|2393_1 248 RMIHGVPALICFISSVMTLEPGDLVVTGTPAGVGKLCPGDNITAGVEGHCEMT 300
                 78999**************************************9999988876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (314 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       163  (0.0397367); expected 82.0 (0.02)
Passed bias filter:                      113  (0.0275475); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.29u 0.16s 00:00:00.44 Elapsed: 00:00:00.37
# Mc/sec: 1120.12
//
Query:       MMETSP1137-20121227|2394_1  [L=1136]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1136 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        70  (0.0170648); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.67u 0.15s 00:00:00.82 Elapsed: 00:00:00.54
# Mc/sec: 2776.66
//
Query:       MMETSP1137-20121227|2395_1  [L=657]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.4e-65  216.3   0.0    1.2e-64  215.8   0.0    1.1  1  TIGR01292 TRX_reduct: thioredoxin-disulfide reductase
    2.2e-51  172.9   0.1    3.1e-51  172.4   0.0    1.1  1  TIGR03143 AhpF_homolog: putative alkyl hydroperoxide reductase F subunit
    3.4e-45  152.4   0.1    4.9e-45  151.8   0.0    1.1  1  TIGR03140 AhpF: alkyl hydroperoxide reductase, F subunit
    3.2e-13   47.0   0.1    2.4e-08   31.0   0.0    2.2  2  TIGR04018 Bthiol_YpdA: putative bacillithiol system oxidoreductase, YpdA family
    3.3e-09   33.8   1.8    0.00045   16.9   0.0    2.1  2  TIGR01350 lipoamide_DH: dihydrolipoyl dehydrogenase
      6e-09   33.2   1.4    1.7e-05   21.9   0.0    2.1  2  TIGR02053 MerA: mercuric reductase
    4.7e-07   26.4   5.3    1.4e-05   21.5   0.9    2.1  2  TIGR03997 mycofact_OYE_2: mycofactocin system FadH/OYE family oxidoreductase 2
    1.1e-06   24.3   1.9    1.2e-05   20.8   1.3    1.9  1  TIGR03315 Se_ygfK: putative selenate reductase, YgfK subunit
    6.1e-06   23.1   1.3      0.018   11.7   0.1    2.2  2  TIGR01316 gltA: glutamate synthase (NADPH), homotetrameric
    8.7e-06   21.6   0.7    8.7e-06   21.6   0.5    1.5  2  TIGR01372 soxA: sarcosine oxidase, alpha subunit family
    5.1e-05   19.8   7.8     0.0059   13.0   1.6    2.2  2  TIGR03996 mycofact_OYE_1: mycofactocin system FadH/OYE family oxidoreductase 1
    5.9e-05   20.2   0.7    0.00011   19.4   0.1    1.7  2  TIGR00292 TIGR00292: thiazole biosynthesis enzyme
    0.00028   17.6   0.1     0.0019   14.8   0.0    1.9  2  TIGR03385 CoA_CoA_reduc: CoA-disulfide reductase
    0.00086   15.8   4.7      0.012   12.0   0.3    2.5  3  TIGR01318 gltD_gamma_fam: glutamate synthase, small subunit
      0.001   15.7   0.5     0.0018   14.9   0.3    1.3  1  TIGR01813 flavo_cyto_c: flavocytochrome c
     0.0017   14.6   2.9      0.035   10.2   0.1    2.1  2  TIGR00136 gidA: tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
     0.0018   15.5   2.7     0.0018   15.5   1.9    1.9  2  TIGR03467 HpnE: squalene-associated FAD-dependent desaturase
     0.0026   15.3   2.6     0.0026   15.3   1.8    2.8  3  TIGR02032 GG-red-SF: geranylgeranyl reductase family
     0.0042   13.9   0.2     0.0099   12.7   0.2    1.5  1  TIGR03378 glycerol3P_GlpB: glycerol-3-phosphate dehydrogenase, anaerobic, B subunit
     0.0059   13.7   2.5        1.4    5.8   0.6    3.0  2  TIGR03169 Nterm_to_SelD: pyridine nucleotide-disulfide oxidoreductase family protein
      0.006   13.0   3.0      0.013   11.9   0.0    2.1  2  TIGR01424 gluta_reduc_2: glutathione-disulfide reductase
     0.0063   13.1   0.5      0.011   12.3   0.3    1.3  1  TIGR02731 phytoene_desat: phytoene desaturase
      0.009   12.7   0.6       0.34    7.5   0.0    2.1  2  TIGR01438 TGR: thioredoxin and glutathione reductase
  ------ inclusion threshold ------
      0.018   11.7   3.9       0.02   11.5   0.7    2.3  3  TIGR00275 TIGR00275: flavoprotein, HI0933 family
      0.019   11.7   0.0      0.037   10.7   0.0    1.4  1  TIGR03452 mycothione_red: mycothione reductase
       0.02   11.6   1.5      0.063    9.9   0.2    1.9  2  TIGR01317 GOGAT_sm_gam: glutamate synthase, NADH/NADPH, small subunit
       0.02   11.8   1.3        0.2    8.6   0.8    2.3  2  TIGR01790 carotene-cycl: lycopene cyclase family protein
      0.041   10.4   2.1       0.18    8.3   0.6    2.3  2  TIGR02028 ChlP: geranylgeranyl reductase
      0.056   10.2   4.7       0.77    6.5   0.4    2.9  3  TIGR02023 BchP-ChlP: geranylgeranyl reductase
      0.064   10.7   2.0       0.48    7.9   0.1    2.5  2  TIGR01470 cysG_Nterm: siroheme synthase, N-terminal domain
        2.5    4.7   7.6       0.44    7.1   0.5    2.5  3  TIGR01988 Ubi-OHases: ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family


Domain annotation for each model (and alignments):
>> TIGR01292  TRX_reduct: thioredoxin-disulfide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  215.8   0.0   9.1e-67   1.2e-64       2     207 ..     442     647 ..     441     651 .. 0.96

  Alignments for each domain:
  == domain 1    score: 215.8 bits;  conditional E-value: 9.1e-67
   TIGR01292   2 dviiiGaGpaGltaaiYaaranlktlliegkeaggqltttt.evenyPGfkegisgselmekmkeqakkfgaeiileevkkvdkkerpfkvlte.dekeykakaviiAtGakarklgikgeeeflgrGvsyCavCDgalfknkevavvGggdsAveealyLskiakkVtlvhrrdklraekillerlkknekievllnstveeikGde 207
                 +v+++G+GpaGl+aa+Yaara+lk++++   + ggql  +  +venyPG+  g +g+ l+ +m++qa++ ga++++++ ++vd +++pf + ++ +++ +++ ++iiAtGa++r+lg++ge +f g+Gvs+Ca+CDg+l+++++ +v+Gggd+A+eeal+L++ +++Vtlvhr  klra+k+l+er+ ++  i+vl++++ve+ +Gd+
  MMETSP1137-20121227|2395_1 442 KVVVLGGGPAGLSAALYAARAGLKPVVVA-PRLGGQLEAKGvDVENYPGVD-GSTGPFLVARMRRQAVRAGATLVADAAISVDLARSPFEIALNeSGTRMHTLSMIIATGANSRWLGVPGEMQFRGQGVSSCATCDGFLYRGQHALVIGGGDTAMEEALVLARTCSHVTLVHRGTKLRASKTLAERVLAHTAISVLFSTVVEKFEGDD 647
                 89**************************9.99*****887659*******5.69************************************99885778999*********************************************************************************************************97 PP

>> TIGR03143  AhpF_homolog: putative alkyl hydroperoxide reductase F subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  172.4   0.0   2.4e-53   3.1e-51       7     210 ..     443     648 ..     439     653 .. 0.95

  Alignments for each domain:
  == domain 1    score: 172.4 bits;  conditional E-value: 2.4e-53
   TIGR03143   7 lvviGgGpaglsaGiyagraklkvliiekdelGGqit.itsevvnyPgireitGeelmqemrkqaqdfgvkflqaevldvdlegdiktvktak..gdlkalavliatGasprklGfeGeeeftGrGvaycatcdGefftGldvlviGgGfaaaeeavfltkyakkvtvivrepdftcakaiaekvkanPkievkfnvelkevtGddv 210
                 +vv+GgGpaglsa +ya+ra lk +++   +lGGq++ +  +v+nyPg+   tG+ l+ +mr+qa   g+ ++ +++++vdl+    ++  ++  + +++l+++iatGa +r lG +Ge +f+G+Gv+ catcdG +++G++ lviGgG +a eea+ l++ +++vt++ r+ ++  +k++ae+v+a+  i+v f + +++ +Gdd+
  MMETSP1137-20121227|2395_1 443 VVVLGGGPAGLSAALYAARAGLKPVVVA-PRLGGQLEaKGVDVENYPGVDGSTGPFLVARMRRQAVRAGATLVADAAISVDLARSPFEIALNEsgTRMHTLSMIIATGANSRWLGVPGEMQFRGQGVSSCATCDGFLYRGQHALVIGGGDTAMEEALVLARTCSHVTLVHRGTKLRASKTLAERVLAHTAISVLFSTVVEKFEGDDT 648
                 89*********************99886.69*****83579*******************************************999987665225789********************************************************************************************************9986 PP

>> TIGR03140  AhpF: alkyl hydroperoxide reductase, F subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  151.8   0.0   3.7e-47   4.9e-45     207     418 ..     435     647 ..     422     652 .. 0.89

  Alignments for each domain:
  == domain 1    score: 151.8 bits;  conditional E-value: 3.7e-47
   TIGR03140 207 eeekekydvlvvGgGPagaaaaiyaarkGlkvalvaeriGGqvk.dtvgienlisvkettGsklaanleehikeynidvleeqkvkkieteeeakevel.esGevlkaksvivatGakWrelgvpGekeylgkGvayCphCdGPlfkgkkvaviGGGnsGieaaidlaGivehvtvlefadelkadkvlveklkslsnvdiltsaktkeivgdg 418
                     ++  v+v+GgGPag +aa+yaar Glk  +va r+GGq +   v++en+ +v  +tG+ l a++++   +   +++    + +++ +    e+ l esG ++++ s+i+atGa+ r lgvpGe +++g+Gv+ C+ CdG l++g++  viGGG++ +e a+ la  ++hvt++    +l+a k l e++  ++ +++l s+  ++  gd+
  MMETSP1137-20121227|2395_1 435 RAXNSPAKVVVLGGGPAGLSAALYAARAGLKPVVVAPRLGGQLEaKGVDVENYPGVDGSTGPFLVARMRRQAVRAGATLVADAAI-SVDLARSPFEIALnESGTRMHTLSMIIATGANSRWLGVPGEMQFRGQGVSSCATCDGFLYRGQHALVIGGGDTAMEEALVLARTCSHVTLVHRGTKLRASKTLAERVLAHTAISVLFSTVVEKFEGDD 647
                 45567889**********************************973579****************999988776666666655444.4566667777777368******************************************************************************************************9999999886 PP

>> TIGR04018  Bthiol_YpdA: putative bacillithiol system oxidoreductase, YpdA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.1     3e-05    0.0039       2      28 ..     443     469 ..     442     473 .. 0.94
   2 !   31.0   0.0   1.8e-10   2.4e-08      99     190 ..     524     619 ..     515     648 .. 0.75

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 3e-05
   TIGR04018   2 viiiGaGPiGlaaaieakkaglsylii 28 
                 v+++G+GP Gl+aa+ a +agl+ +++
  MMETSP1137-20121227|2395_1 443 VVVLGGGPAGLSAALYAARAGLKPVVV 469
                 89**********************997 PP

  == domain 2    score: 31.0 bits;  conditional E-value: 1.8e-10
   TIGR04018  99 keekfevkt..ekeeyeakkvvvatGyydipnllnvpGedlpk...vshy.ykeahpyvkqkvvvvGgknsavdaalelyrkgaevtlvvrgeelsek 190
                 +++ fe++   + +++++ ++++atG   + + l+vpGe + +   vs     + + y +q+ +v+Gg + a++ al l r+ ++vtlv+rg++l+++
  MMETSP1137-20121227|2395_1 524 ARSPFEIALneSGTRMHTLSMIIATGA--NSRWLGVPGEMQFRgqgVSSCaTCDGFLYRGQHALVIGGGDTAMEEALVLARTCSHVTLVHRGTKLRAS 619
                 55667777633455788899******7..6789*****98754222665514699**************************************99875 PP

>> TIGR01350  lipoamide_DH: dihydrolipoyl dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.8   8.4e-06    0.0011       3      37 ..     442     475 ..     440     481 .. 0.87
   2 !   16.9   0.0   3.4e-06   0.00045     118     238 ..     529     644 ..     505     652 .. 0.78

  Alignments for each domain:
  == domain 1    score: 15.6 bits;  conditional E-value: 8.4e-06
   TIGR01350   3 dvvviGgGpgGYvaAiraaqlglkvalvekeklGG 37 
                  vvv+GgGp+G  aA  aa++glk ++v   +lGG
  MMETSP1137-20121227|2395_1 442 KVVVLGGGPAGLSAALYAARAGLKPVVVA-PRLGG 475
                 69**********************99885.45666 PP

  == domain 2    score: 16.9 bits;  conditional E-value: 3.4e-06
   TIGR01350 118 evevkkekkekkleakniiiAtGseprelplk..leedekvvitseealelkevpeslvivGgGviGvEfasifaklGvkvtvielldrilpaldaevskvl.kkklkkkgvkiltnakvteve 238
                 e+ ++++   + +++ ++iiAtG++ r l ++  +++ ++ v +  +   +    ++ +++GgG   +E a ++a+  ++vt++    ++ +      sk+l ++ l ++ +++l+++ v++ e
  MMETSP1137-20121227|2395_1 529 EIALNESG--TRMHTLSMIIATGANSRWLGVPgeMQFRGQGVSSCATCDGFLYRGQHALVIGGGDTAMEEALVLARTCSHVTLVHRGTKLRA------SKTLaERVLAHTAISVLFSTVVEKFE 644
                 44455554..5688999**********9988888999999999999999999999****************************998776633......33330344555666666666666655 PP

>> TIGR02053  MerA: mercuric reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.2   0.3   0.00044     0.059       2      30 ..     442     470 ..     439     477 .. 0.89
   2 !   21.9   0.0   1.3e-07   1.7e-05     109     235 ..     509     644 ..     498     653 .. 0.69

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 0.00044
   TIGR02053   2 dlviiGsGaaafaaaikaaelgakvvlve 30 
                 ++v++G+G a+++aa+ aa+ g k v+v 
  MMETSP1137-20121227|2395_1 442 KVVVLGGGPAGLSAALYAARAGLKPVVVA 470
                 689*********************99986 PP

  == domain 2    score: 21.9 bits;  conditional E-value: 1.3e-07
   TIGR02053 109 gkakfkdektvkvdl............gkevvgakrvliAtGarpavPeipGLkeae......yltseelleldkipeslvviGggaiavElaqlfarlGsevtllqrserllkeeepeisaaveellaeeGvevvksakvkavs 235
                 + a+++++  ++vdl            g+ + +   ++iAtGa+++   +pG  +          t + +l      ++ +viGgg  a+E a ++ar  s+vtl++r  +l    ++      e++la+  ++v+ s+ v++ +
  MMETSP1137-20121227|2395_1 509 AGATLVADAAISVDLarspfeialnesGTRMHTLS-MIIATGANSRWLGVPGEMQFRgqgvssCATCDGFLYRG---QHALVIGGGDTAMEEALVLARTCSHVTLVHRGTKLRA--SKT---LAERVLAHTAISVLFSTVVEKFE 644
                 55555555555555555555555554556666666.9***************9999855444344444444333...7899***************************976533..333...33556777777777777666655 PP

>> TIGR03997  mycofact_OYE_2: mycofactocin system FadH/OYE family oxidoreductase 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.5   0.9   1.1e-07   1.4e-05     374     420 ..     435     479 ..     426     518 .. 0.87
   2 !    6.7   0.1    0.0031      0.41     380     433 ..     582     635 ..     545     646 .. 0.80

  Alignments for each domain:
  == domain 1    score: 21.5 bits;  conditional E-value: 1.1e-07
   TIGR03997 374 kkarrrkkvlvvGgGPaGleaaataarrGhrvtllereeelGGqvkl 420
                 +  + + kv+v+GgGPaGl+aa  aar G + +++  + +lGGq+++
  MMETSP1137-20121227|2395_1 435 RAXNSPAKVVVLGGGPAGLSAALYAARAGLKPVVV--APRLGGQLEA 479
                 55566689*********************998887..5789999975 PP

  == domain 2    score: 6.7 bits;  conditional E-value: 0.0031
   TIGR03997 380 kkvlvvGgGPaGleaaataarrGhrvtllereeelGGqvklaaklpgreelael 433
                 ++ lv+GgG + +e a   ar   +vtl+ r+++l    +la ++   + ++ l
  MMETSP1137-20121227|2395_1 582 QHALVIGGGDTAMEEALVLARTCSHVTLVHRGTKLRASKTLAERVLAHTAISVL 635
                 7789****************************9998887777777666555555 PP

>> TIGR03315  Se_ygfK: putative selenate reductase, YgfK subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   1.3   8.8e-08   1.2e-05     535     708 ..     438     621 ..     425     648 .. 0.61

  Alignments for each domain:
  == domain 1    score: 20.8 bits;  conditional E-value: 8.8e-08
   TIGR03315 535 sekhkvaviGaGPaGlsagyflaraGl.pvtvfek...kekagGvvkniiPe.......f...risaeviqkdlelvkkkGvefklGvse.dltvdelkkegyk.yvvlaiGadkssklklkegnervlksleflkefkedktklklGkrvvvvGgGntamdaaraalrvpGvekvtvvyrrtkkemPas 708
                 ++  kv v+G+GPaGlsa+++ araGl pv v  +   + +a Gv  +  P        f   r+  ++++    lv++  + + l  s+ ++ ++e   + ++  +++a+Ga+ s+ l + ++ +   + +    +    +  l  G++  v+GgG+tam+ a    r+    +vt+v+r tk     +
  MMETSP1137-20121227|2395_1 438 NSPAKVVVLGGGPAGLSAALYAARAGLkPVVVAPRlggQLEAKGVDVENYPGvdgstgpFlvaRMRRQAVRAGATLVADAAISVDLARSPfEIALNESGTRMHTlSMIIATGAN-SRWLGVPGEMQFRGQGV---SSCATCDGFLYRGQHALVIGGGDTAMEEALVLART--CSHVTLVHRGTKLRASKT 621
                 44569*********************8356665442224566776544455411111112233666677777777777777777777555344555544443331345555554.33444444433222333...333344478899**************998776665..678999999988654444 PP

>> TIGR01316  gltA: glutamate synthase (NADPH), homotetrameric
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.7   0.1   0.00014     0.018     128     160 ..     435     467 ..     427     478 .. 0.85
   2 !   10.2   0.0   0.00037     0.049     266     315 ..     575     624 ..     568     652 .. 0.73

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 0.00014
   TIGR01316 128 kapstkkkvaviGaGpaGlavaselakkGhevt 160
                 +a ++  kv v+G GpaGl+ a   a++G +  
  MMETSP1137-20121227|2395_1 435 RAXNSPAKVVVLGGGPAGLSAALYAARAGLKPV 467
                 5667889**********************8754 PP

  == domain 2    score: 10.2 bits;  conditional E-value: 0.00037
   TIGR01316 266 dtpvevgkkvvviGgGntavdaartalrlGaevhvvyrrtredmtareee 315
                 d  ++ g++ +viGgG ta++ a    r    v++v+r t+  ++ +  e
  MMETSP1137-20121227|2395_1 575 DGFLYRGQHALVIGGGDTAMEEALVLARTCSHVTLVHRGTKLRASKTLAE 624
                 566788999*****************************887555444333 PP

>> TIGR01372  soxA: sarcosine oxidase, alpha subunit family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.6   0.5   6.6e-08   8.7e-06     164     218 ..     436     488 ..     425     514 .. 0.84
   2 ?   -2.6   0.1       1.3   1.8e+02     172     199 ..     585     612 ..     580     630 .. 0.88

  Alignments for each domain:
  == domain 1    score: 21.6 bits;  conditional E-value: 6.6e-08
   TIGR01372 164 kvnahcDvLvvGaGpaGLaaAraAaraGarvilvdeqaeaGGsllseaetidGkp 218
                   n  + v+v+G+GpaGL+aA+ AaraG++ ++v   ++ GG+l+ +   ++  p
  MMETSP1137-20121227|2395_1 436 AXNSPAKVVVLGGGPAGLSAALYAARAGLKPVVVA--PRLGGQLEAKGVDVENYP 488
                 56677889**********************99985..789999998876665554 PP

  == domain 2    score: -2.6 bits;  conditional E-value: 1.3
   TIGR01372 172 LvvGaGpaGLaaAraAaraGarvilvde 199
                 Lv+G+G + +  A+  ar+  +v+lv  
  MMETSP1137-20121227|2395_1 585 LVIGGGDTAMEEALVLARTCSHVTLVHR 612
                 9***********************9976 PP

>> TIGR03996  mycofact_OYE_1: mycofactocin system FadH/OYE family oxidoreductase 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   1.6   4.4e-05    0.0059     369     493 ..     437     575 ..     427     585 .. 0.65
   2 !   10.3   0.2   0.00028     0.037     374     410 ..     583     619 ..     578     641 .. 0.86

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 4.4e-05
   TIGR03996 369 aatpgdvlvvGGGpaGleaarvlavrGhrvtlaeasarlGGmvriaa....rgdGl..srlaaladwledecrrlGvelrlgaavdae......el..da..araaGevvvlatGsvarplpapvdatvrvldaaevlead 493
                    p++v+v+GGGpaGl aa   a +G +  ++  + rlGG + +        +G   s    l   +  +  r G +l  +aa++++      e+  ++  +r +   +++atG+ +r l +p +   r  +++     d
  MMETSP1137-20121227|2395_1 437 XNSPAKVVVLGGGPAGLSAALYAARAGLKPVVV--APRLGGQLEAKGvdveNYPGVdgSTGPFLVARMRRQAVRAGATLVADAAISVDlarspfEIalNEsgTRMHTLSMIIATGANSRWLGVPGEMQFRGQGVSSCATCD 575
                 567999**************9999999775544..6789998876431111223331123345666777778888999999999887533333333112211344455678888888888888888887777777666555 PP

  == domain 2    score: 10.3 bits;  conditional E-value: 0.00028
   TIGR03996 374 dvlvvGGGpaGleaarvlavrGhrvtlaeasarlGGm 410
                 ++lv+GGG + +e a vla    +vtl+ ++++l   
  MMETSP1137-20121227|2395_1 583 HALVIGGGDTAMEEALVLARTCSHVTLVHRGTKLRAS 619
                 68*****************************999655 PP

>> TIGR00292  TIGR00292: thiazole biosynthesis enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.1   8.1e-07   0.00011      22      54 ..     441     473 ..     430     482 .. 0.89
   2 ?   -3.8   0.0       9.8   1.3e+03      25      50 ..     585     610 ..     582     613 .. 0.80

  Alignments for each domain:
  == domain 1    score: 19.4 bits;  conditional E-value: 8.1e-07
   TIGR00292  22 sDviivGaGpsGLtaayylakeglkvvvlerkl 54 
                 + v++ G+Gp+GL+aa y a++glk vv+  +l
  MMETSP1137-20121227|2395_1 441 AKVVVLGGGPAGLSAALYAARAGLKPVVVAPRL 473
                 579**********************99987665 PP

  == domain 2    score: -3.8 bits;  conditional E-value: 9.8
   TIGR00292  25 iivGaGpsGLtaayylakeglkvvvl 50 
                 +++G+G + +  a +la+    v ++
  MMETSP1137-20121227|2395_1 585 LVIGGGDTAMEEALVLARTCSHVTLV 610
                 57899999999999999988777766 PP

>> TIGR03385  CoA_CoA_reduc: CoA-disulfide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.1      0.43        57       1      20 [.     442     461 ..     442     467 .. 0.87
   2 !   14.8   0.0   1.5e-05    0.0019     106     184 ..     543     616 ..     515     635 .. 0.90

  Alignments for each domain:
  == domain 1    score: 0.1 bits;  conditional E-value: 0.43
   TIGR03385   1 kivivGgvaaGasaAsrvrR 20 
                 k+v++Gg+ aG saA  + R
  MMETSP1137-20121227|2395_1 442 KVVVLGGGPAGLSAALYAAR 461
                 89************976655 PP

  == domain 2    score: 14.8 bits;  conditional E-value: 1.5e-05
   TIGR03385 106 kLilstGAkpkileiegieldavftlrnledaeaikkyldkkkvekvvviGgGyiglemvealkergkevtlierseki 184
                  +i++tGA+++ l ++g   ++ f  + +    + + +l   + ++++viGgG  ++e +  l +   +vtl++r++k+
  MMETSP1137-20121227|2395_1 543 SMIIATGANSRWLGVPG---EMQFRGQGVSSCATCDGFL--YRGQHALVIGGGDTAMEEALVLARTCSHVTLVHRGTKL 616
                 579**************...9******************..7889*************99999*************998 PP

>> TIGR01318  gltD_gamma_fam: glutamate synthase, small subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   0.0       5.8   7.6e+02     358     388 ..     375     405 ..     368     406 .. 0.78
   2 !   12.0   0.3   9.2e-05     0.012     141     179 ..     440     476 ..     434     482 .. 0.84
   3 ?    5.0   0.1     0.012       1.6     281     314 ..     580     612 ..     570     624 .. 0.81

  Alignments for each domain:
  == domain 1    score: -3.8 bits;  conditional E-value: 5.8
   TIGR01318 358 klvrtklgepdakGrrraeivaGseavlead 388
                 + ++ +l +  a+G   a+ v+Gse++l+ d
  MMETSP1137-20121227|2395_1 375 AQLKAALRQRLASGGGGAKLVSGSEHELDGD 405
                 55566666667888889999*******9988 PP

  == domain 2    score: 12.0 bits;  conditional E-value: 9.2e-05
   TIGR01318 141 gkrvaviGaGpaGlacadvlaraGvkvvvfdrypeiGGl 179
                   +v v+G+GpaGl+ a   araG k vv    p++GG 
  MMETSP1137-20121227|2395_1 440 PAKVVVLGGGPAGLSAALYAARAGLKPVVV--APRLGGQ 476
                 579**********************98886..3666665 PP

  == domain 3    score: 5.0 bits;  conditional E-value: 0.012
   TIGR01318 281 eGkrvvvlGGGdtamdcvrtairlgakkvtcvyr 314
                  G++ +v+GGGdtam+     + ++ ++vt v+r
  MMETSP1137-20121227|2395_1 580 RGQHALVIGGGDTAMEEALV-LARTCSHVTLVHR 612
                 689999*********97654.4456678888777 PP

>> TIGR01813  flavo_cyto_c: flavocytochrome c
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.3   1.3e-05    0.0018       2      28 ..     443     469 ..     442     476 .. 0.91

  Alignments for each domain:
  == domain 1    score: 14.9 bits;  conditional E-value: 1.3e-05
   TIGR01813   2 vvvvGsGlAGlsaaleakkaglaevvv 28 
                 vvv+G G AGlsaal a +agl++vvv
  MMETSP1137-20121227|2395_1 443 VVVLGGGPAGLSAALYAARAGLKPVVV 469
                 9********************999998 PP

>> TIGR00136  gidA: tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.2   0.1   0.00027     0.035       2      30 ..     442     470 ..     441     476 .. 0.89
   2 ?    4.7   0.2     0.013       1.7       3      30 ..     584     611 ..     582     618 .. 0.90

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 0.00027
   TIGR00136   2 dviviGaGhaGieaalaaarlgaktlllt 30 
                 +v+v+G+G aG+ aal aar g+k  +++
  MMETSP1137-20121227|2395_1 442 KVVVLGGGPAGLSAALYAARAGLKPVVVA 470
                 69*********************988776 PP

  == domain 2    score: 4.7 bits;  conditional E-value: 0.013
   TIGR00136   3 viviGaGhaGieaalaaarlgaktlllt 30 
                  +viG+G   +e al+ ar+  +++l+ 
  MMETSP1137-20121227|2395_1 584 ALVIGGGDTAMEEALVLARTCSHVTLVH 611
                 68**********************9975 PP

>> TIGR03467  HpnE: squalene-associated FAD-dependent desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   1.9   1.3e-05    0.0018       1      36 [.     443     476 ..     443     486 .. 0.90
   2 ?   -1.8   0.2       2.3     3e+02       2      32 ..     585     615 ..     584     617 .. 0.90

  Alignments for each domain:
  == domain 1    score: 15.5 bits;  conditional E-value: 1.3e-05
   TIGR03467   1 vvvvGgGlAGLaAAveLaraGvrvtllEarrqlGGR 36 
                 vvv GgG AGL+AA+  araG++  ++  +++lGG 
  MMETSP1137-20121227|2395_1 443 VVVLGGGPAGLSAALYAARAGLKPVVV--APRLGGQ 476
                 89**********************997..7889996 PP

  == domain 2    score: -1.8 bits;  conditional E-value: 2.3
   TIGR03467   2 vvvGgGlAGLaAAveLaraGvrvtllEarrq 32 
                 +v+GgG   +  A+ Lar+  +vtl+ ++ +
  MMETSP1137-20121227|2395_1 585 LVIGGGDTAMEEALVLARTCSHVTLVHRGTK 615
                 69***********************988765 PP

>> TIGR02032  GG-red-SF: geranylgeranyl reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   1.8     2e-05    0.0026       3      28 ..     443     468 ..     441     472 .. 0.90
   2 ?    0.4   0.0      0.68        90      98     150 ..     503     553 ..     497     569 .. 0.81
   3 ?   -1.0   0.1       1.8   2.4e+02       4      39 ..     585     621 ..     584     637 .. 0.86

  Alignments for each domain:
  == domain 1    score: 15.3 bits;  conditional E-value: 2e-05
   TIGR02032   3 vvvvGaGpaGssaAlrlakkGlrVll 28 
                 vvv G+GpaG saAl++a++Gl+ ++
  MMETSP1137-20121227|2395_1 443 VVVLGGGPAGLSAALYAARAGLKPVV 468
                 9********************98555 PP

  == domain 2    score: 0.4 bits;  conditional E-value: 0.68
   TIGR02032  98 aekAqeagaelllettvlsveiedekvkvevredekkevtakivigAdGaksk 150
                  ++A +aga+l  ++++      +   +++++e +   ++   +i+A+Ga+s+
  MMETSP1137-20121227|2395_1 503 RRQAVRAGATLVADAAISV-DLARSPFEIALNE-SGTRMHTLSMIIATGANSR 553
                 6899999999988888875.4444688888887.5888999999999999997 PP

  == domain 3    score: -1.0 bits;  conditional E-value: 1.8
   TIGR02032   4 vvvGaGpaGssaAlrlakkGlrVlllekkelpre.ke 39 
                 +v+G+G      Al la++  +V l+ +  + r+ k+
  MMETSP1137-20121227|2395_1 585 LVIGGGDTAMEEALVLARTCSHVTLVHRGTKLRAsKT 621
                 79999999999***************99998887665 PP

>> TIGR03378  glycerol3P_GlpB: glycerol-3-phosphate dehydrogenase, anaerobic, B subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.7   0.2   7.5e-05    0.0099       3      30 ..     443     470 ..     442     476 .. 0.93

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 7.5e-05
   TIGR03378   3 viiiGgGlaGlscalrlaeaGkktaiia 30 
                 v+++GgG aGls+al +a+aG k +++a
  MMETSP1137-20121227|2395_1 443 VVVLGGGPAGLSAALYAARAGLKPVVVA 470
                 79***********************997 PP

>> TIGR03169  Nterm_to_SelD: pyridine nucleotide-disulfide oxidoreductase family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   0.0     0.021       2.7     136     166 ..     431     461 ..     422     474 .. 0.79
   2 ?    5.8   0.6      0.01       1.4      60     218 ..     502     644 ..     498     655 .. 0.62

  Alignments for each domain:
  == domain 1    score: 4.9 bits;  conditional E-value: 0.021
   TIGR03169 136 lekakaseetkslavvGgGaagvElalalrk 166
                  ++ +a +++++++v+GgG ag+  al  ++
  MMETSP1137-20121227|2395_1 431 SAQFRAXNSPAKVVVLGGGPAGLSAALYAAR 461
                 45556778899***********998886554 PP

  == domain 2    score: 5.8 bits;  conditional E-value: 0.01
   TIGR03169  60 lrrlaekagaelvedeatgldleerkvllaeree.isydvlsldvGsttalsevegaadkavpvKPleellaaweellekakaseetkslavvGgGaagvElalalrkrlkkrglkaevslaseakllqalsakvrklvkrllakrgievlekeevteve 218
                 +rr a +aga+lv+d a+++dl +    +a +e+  +   ls+ + + ++ ++     +  +  + ++++++ ++ +l +       ++ +v+GgG  ++E al l++   +  l      +++     ++ +  + l++r+la+  i+vl ++ v++ e
  MMETSP1137-20121227|2395_1 502 MRRQAVRAGATLVADAAISVDLARSPFEIALNESgTRMHTLSMIIATGANSRWLGVPGEMQFRGQGVSSCAT-CDGFLYRG------QHALVIGGGDTAMEEALVLARTCSHVTLV-----HRG-----TKLRASKTLAERVLAHTAISVLFSTVVEKFE 644
                 577788888888888888888877765554333335555555555444444555556666666666665555.55555553......35679999999999999998888776665.....222.....3334445566777777777777777766666 PP

>> TIGR01424  gluta_reduc_2: glutathione-disulfide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.6      0.23        31       6      38 ..     444     475 ..     441     482 .. 0.79
   2 !   11.9   0.0   9.6e-05     0.013     102     202 ..     508     617 ..     499     654 .. 0.71

  Alignments for each domain:
  == domain 1    score: 0.8 bits;  conditional E-value: 0.23
   TIGR01424   6 fviGaGsGGvraarlaaalGakvaiaeedlvGG 38 
                  v+G+G  G+ aa +aa  G k  ++  +++GG
  MMETSP1137-20121227|2395_1 444 VVLGGGPAGLSAALYAARAGLKPVVV-APRLGG 475
                 799*****************995544.345555 PP

  == domain 2    score: 11.9 bits;  conditional E-value: 9.6e-05
   TIGR01424 102 kagvellegraelvd....antvevledgktytaekiliavGgrpvkpelPGa....elaitsdeafd.letlPksilvvGgGyiavefagifrGlGvkvtllyrgekil 202
                 +ag+ l+   a  vd    + ++ ++e+g+++ +  ++ia+G+++    +PG       +++s    d +    +++lv+GgG  a+e a +++   ++vtl++rg k+ 
  MMETSP1137-20121227|2395_1 508 RAGATLVADAAISVDlarsPFEIALNESGTRMHTLSMIIATGANSRWLGVPGEmqfrGQGVSSCATCDgFLYRGQHALVIGGGDTAMEEALVLARTCSHVTLVHRGTKLR 617
                 567777666666555333366888999999999999*******99999999952221346666555542345679*******************************9853 PP

>> TIGR02731  phytoene_desat: phytoene desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.3   0.3   8.3e-05     0.011       1      39 [.     442     478 ..     442     487 .. 0.88

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 8.3e-05
   TIGR02731   1 rvaiagaglaglsaakyladaghtpivleardvlggkva 39 
                 +v++ g+g aglsaa y a ag +p+v+  r  lgg++ 
  MMETSP1137-20121227|2395_1 442 KVVVLGGGPAGLSAALYAARAGLKPVVVAPR--LGGQLE 478
                 699************************9766..777765 PP

>> TIGR01438  TGR: thioredoxin and glutathione reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.1     0.046       6.1       5      30 ..     443     468 ..     441     473 .. 0.86
   2 !    7.5   0.0    0.0026      0.34     145     228 ..     542     627 ..     528     645 .. 0.75

  Alignments for each domain:
  == domain 1    score: 3.4 bits;  conditional E-value: 0.046
   TIGR01438   5 liviGgGsGGlaaakeaaklgakvll 30 
                 ++v+GgG+ Gl+aa  aa  g k ++
  MMETSP1137-20121227|2395_1 443 VVVLGGGPAGLSAALYAARAGLKPVV 468
                 699***************99977554 PP

  == domain 2    score: 7.5 bits;  conditional E-value: 0.0026
   TIGR01438 145 krvliatGlrpkypddieGakel...sitsddlf.slkkvpGktlvvGasyvalecaGflaalgldvtvlvrsillrGfdqdcavkvk 228
                   ++iatG   ++++ ++G+ ++   +++s      + +    +lv+G++  a+e a  la    +vt++ r   lr   + +a++v 
  MMETSP1137-20121227|2395_1 542 LSMIIATGANSRWLG-VPGEMQFrgqGVSSCATCdGFLYRGQHALVIGGGDTAMEEALVLARTCSHVTLVHRGTKLRAS-KTLAERVL 627
                 5689**********7.***9554222444443331233444579*****************************999963.45555555 PP

>> TIGR00275  TIGR00275: flavoprotein, HI0933 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.7   0.00015      0.02       1      24 [.     443     466 ..     443     476 .. 0.84
   2 ?   -2.8   0.0       3.4   4.5e+02     137     161 ..     526     552 ..     500     553 .. 0.71
   3 ?   -0.4   0.0      0.62        82       2      33 ..     585     616 ..     584     622 .. 0.89

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 0.00015
   TIGR00275   1 viiiGgGaaGlmaAitaaeegakV 24 
                 v+++GgG+aGl aA+ aa++g+k 
  MMETSP1137-20121227|2395_1 443 VVVLGGGPAGLSAALYAARAGLKP 466
                 79*****************77653 PP

  == domain 2    score: -2.8 bits;  conditional E-value: 3.4
   TIGR00275 137 ekfevet..ekkeleakkvilatGgks 161
                 + fe+ +  +++ +++ ++i+atG +s
  MMETSP1137-20121227|2395_1 526 SPFEIALneSGTRMHTLSMIIATGANS 552
                 4455555437788889999*****977 PP

  == domain 3    score: -0.4 bits;  conditional E-value: 0.62
   TIGR00275   2 iiiGgGaaGlmaAitaaeegakVlllEknkki 33 
                 ++iGgG   +  A+ +a++  +V+l+ + +k+
  MMETSP1137-20121227|2395_1 585 LVIGGGDTAMEEALVLARTCSHVTLVHRGTKL 616
                 79***********************9887664 PP

>> TIGR03452  mycothione_red: mycothione reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   0.00028     0.037     169     211 ..     581     621 ..     525     649 .. 0.78

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 0.00028
   TIGR03452 169 peslvivGgGyialefahvfsalGtkvtlvarsekllrklded 211
                  ++ +++GgG  a+e a v+    ++vtlv r++kl +   ++
  MMETSP1137-20121227|2395_1 581 GQHALVIGGGDTAMEEALVLARTCSHVTLVHRGTKLRA--SKT 621
                 568899****************************8843..344 PP

>> TIGR01317  GOGAT_sm_gam: glutamate synthase, NADH/NADPH, small subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.2   0.00048     0.063     143     172 ..     440     469 ..     430     537 .. 0.88
   2 ?    0.5   0.0      0.34        45     282     297 ..     580     595 ..     556     615 .. 0.83

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 0.00048
   TIGR01317 143 GkkvavvGsGPaGlaaadqlnraGhtvtvf 172
                   kv v+G GPaGl+aa   +raG +  v 
  MMETSP1137-20121227|2395_1 440 PAKVVVLGGGPAGLSAALYAARAGLKPVVV 469
                 579*********************875553 PP

  == domain 2    score: 0.5 bits;  conditional E-value: 0.34
   TIGR01317 282 kgkkvvviGGGdtGad 297
                 +g++ +viGGGdt  +
  MMETSP1137-20121227|2395_1 580 RGQHALVIGGGDTAME 595
                 6889999999999754 PP

>> TIGR01790  carotene-cycl: lycopene cyclase family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   0.8    0.0015       0.2       2      30 ..     443     471 ..     442     477 .. 0.90
   2 ?    0.4   0.0      0.45        60      87     140 ..     498     552 ..     493     561 .. 0.89

  Alignments for each domain:
  == domain 1    score: 8.6 bits;  conditional E-value: 0.0015
   TIGR01790   2 liviGgGlAglaiAlelakpglrvqliea 30 
                 ++v GgG+Agl  Al  a++gl+ +++++
  MMETSP1137-20121227|2395_1 443 VVVLGGGPAGLSAALYAARAGLKPVVVAP 471
                 79********************9988886 PP

  == domain 2    score: 0.4 bits;  conditional E-value: 0.45
   TIGR01790  87 lkeellqkleea.vlwleakaikveadavslslvecaggqriqarlVidargfka 140
                 l +++++++++a  +++  +ai+v+ + +  ++   + g+r+++ + i a+g+++
  MMETSP1137-20121227|2395_1 498 LVARMRRQAVRAgATLVADAAISVDLARSPFEIALNESGTRMHTLSMIIATGANS 552
                 667888888888899**********9999999999****************9986 PP

>> TIGR02028  ChlP: geranylgeranyl reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   0.6    0.0014      0.18       2      29 ..     442     469 ..     441     481 .. 0.87
   2 ?   -0.0   0.0      0.47        62      97     121 ..     500     524 ..     496     554 .. 0.73

  Alignments for each domain:
  == domain 1    score: 8.3 bits;  conditional E-value: 0.0014
   TIGR02028   2 rvavvgggpagasaaetlakagiqtfll 29 
                 +v v+gggpag saa   a+ag++ +++
  MMETSP1137-20121227|2395_1 442 KVVVLGGGPAGLSAALYAARAGLKPVVV 469
                 699*******************998776 PP

  == domain 2    score: -0.0 bits;  conditional E-value: 0.47
   TIGR02028  97 sflreraadagatlinglvlklelp 121
                 + +r++a  agatl+    ++++l 
  MMETSP1137-20121227|2395_1 500 ARMRRQAVRAGATLVADAAISVDLA 524
                 6799***********9999998864 PP

>> TIGR02023  BchP-ChlP: geranylgeranyl reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   0.4    0.0058      0.77       2      29 ..     442     469 ..     441     475 .. 0.88
   2 ?    4.0   0.0     0.033       4.4      98     156 ..     502     553 ..     497     560 .. 0.83
   3 ?   -1.3   0.0       1.4   1.9e+02       3      32 ..     584     613 ..     582     618 .. 0.89

  Alignments for each domain:
  == domain 1    score: 6.5 bits;  conditional E-value: 0.0058
   TIGR02023   2 dvlviGggpsGaaaaetLakagievill 29 
                 +v+v+Gggp+G +aa   a+ag + +++
  MMETSP1137-20121227|2395_1 442 KVVVLGGGPAGLSAALYAARAGLKPVVV 469
                 79*******************9987765 PP

  == domain 2    score: 4.0 bits;  conditional E-value: 0.033
   TIGR02023  98 LreraqkaGaeliegllkklerdedkltleyrekekeageekksveadvviGaDGaksk 156
                 +r++a++aGa+l+  +   ++  ++++ + ++e     g   + +++ ++i a Ga+s+
  MMETSP1137-20121227|2395_1 502 MRRQAVRAGATLVADAAISVDLARSPFEIALNES----G---TRMHTLSMIIATGANSR 553
                 79****************************9943....2...23456677778898886 PP

  == domain 3    score: -1.3 bits;  conditional E-value: 1.4
   TIGR02023   3 vlviGggpsGaaaaetLakagievillere 32 
                  lviGgg +    a  La++  +v l+ r 
  MMETSP1137-20121227|2395_1 584 ALVIGGGDTAMEEALVLARTCSHVTLVHRG 613
                 589***********************9986 PP

>> TIGR01470  cysG_Nterm: siroheme synthase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.1      0.36        47      11      46 ..     442     477 ..     437     483 .. 0.88
   2 ?    7.9   0.1    0.0036      0.48       9      51 ..     581     623 ..     578     634 .. 0.81

  Alignments for each domain:
  == domain 1    score: 1.4 bits;  conditional E-value: 0.36
   TIGR01470  11 avlvvGggevalrKarlllkagAklrviaeeleael 46 
                 +v+v Ggg  +l  a   ++ag k+ v+a++l  +l
  MMETSP1137-20121227|2395_1 442 KVVVLGGGPAGLSAALYAARAGLKPVVVAPRLGGQL 477
                 79*************99************9986555 PP

  == domain 2    score: 7.9 bits;  conditional E-value: 0.0036
   TIGR01470   9 gkavlvvGggevalrKarlllkagAklrviaeeleaelkllae 51 
                 g+++lv+Ggg+ a++ a +l+++  +++++ +  +  +++ ++
  MMETSP1137-20121227|2395_1 581 GQHALVIGGGDTAMEEALVLARTCSHVTLVHRGTKLRASKTLA 623
                 8899*******************99999988777666655555 PP

>> TIGR01988  Ubi-OHases: ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   0.5    0.0034      0.44       2      35 ..     443     475 ..     442     493 .. 0.81
   2 ?   -2.5   0.0       2.8   3.7e+02     267     290 ..     498     521 ..     488     522 .. 0.88
   3 ?    1.1   0.1      0.23        31       2      54 ..     584     634 ..     583     641 .. 0.82

  Alignments for each domain:
  == domain 1    score: 7.1 bits;  conditional E-value: 0.0034
   TIGR01988   2 ivIvGgGlvGlalAlaLassadlkvalveakaae 35 
                 +v+ GgG++Gl+ Al  a+ + lk  +v+++   
  MMETSP1137-20121227|2395_1 443 VVVLGGGPAGLSAALYAARAG-LKPVVVAPRLGG 475
                 89*************999776.999988876555 PP

  == domain 2    score: -2.5 bits;  conditional E-value: 2.8
   TIGR01988 267 LslthakryvaervaliGdAAhtv 290
                 L +++ ++ v+ +  l+ dAA +v
  MMETSP1137-20121227|2395_1 498 LVARMRRQAVRAGATLVADAAISV 521
                 667888999************875 PP

  == domain 3    score: 1.1 bits;  conditional E-value: 0.23
   TIGR01988   2 ivIvGgGlvGlalAlaLassadlkvalveakaaekakspafdnRvsAlsaasi 54 
                  +++GgG + +  Al La+    +v+lv +    +a s++  +Rv+A +a s+
  MMETSP1137-20121227|2395_1 584 ALVIGGGDTAMEEALVLARTC-SHVTLVHRGTKLRA-SKTLAERVLAHTAISV 634
                 579***************777.89999999876654.55799***99988876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (657 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       223  (0.0543637); expected 82.0 (0.02)
Passed bias filter:                      187  (0.0455875); expected 82.0 (0.02)
Passed Vit filter:                        53  (0.0129205); expected 4.1 (0.001)
Passed Fwd filter:                        31  (0.00755729); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              31  [number of targets reported over threshold]
# CPU time: 0.82u 0.15s 00:00:00.97 Elapsed: 00:00:00.62
# Mc/sec: 1398.66
//
Query:       MMETSP1137-20121227|2396_1  [L=352]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (352 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       152  (0.0370551); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.13s 00:00:00.40 Elapsed: 00:00:00.39
# Mc/sec: 1191.29
//
Query:       MMETSP1137-20121227|2397_1  [L=199]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (199 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        93  (0.0226719); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.14s 00:00:00.32 Elapsed: 00:00:00.32
# Mc/sec: 820.81
//
Query:       MMETSP1137-20121227|2399_1  [L=465]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (465 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       172  (0.0419308); expected 82.0 (0.02)
Passed bias filter:                       99  (0.0241346); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.17s 00:00:00.50 Elapsed: 00:00:00.42
# Mc/sec: 1461.31
//
Query:       MMETSP1137-20121227|2400_1  [L=242]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (242 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        69  (0.0168211); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.15s 00:00:00.37 Elapsed: 00:00:00.37
# Mc/sec: 863.28
//
Query:       MMETSP1137-20121227|2401_1  [L=310]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.5e-09   35.3   0.0    7.6e-09   33.0   0.0    1.8  2  TIGR01934 MenG_MenH_UbiE: ubiquinone/menaquinone biosynthesis methyltransferase
    2.8e-06   24.9   0.0    5.6e-06   23.9   0.0    1.4  1  TIGR02752 MenG_heptapren: 2-heptaprenyl-1,4-naphthoquinone methyltransferase
     0.0055   14.3   0.0     0.0078   13.9   0.0    1.2  1  TIGR02072 BioC: biotin biosynthesis protein BioC


Domain annotation for each model (and alignments):
>> TIGR01934  MenG_MenH_UbiE: ubiquinone/menaquinone biosynthesis methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.0      0.09   1.2e+02      21      58 ..      34      70 ..      31      80 .. 0.75
   2 !   33.0   0.0   5.5e-12   7.6e-09      36     137 ..     143     235 ..     135     264 .. 0.81

  Alignments for each domain:
  == domain 1    score: -0.4 bits;  conditional E-value: 0.09
   TIGR01934 21 lGldrlWkkkavkkieeekeekvlDvatGtGdlaiela 58
                lG ++ W+ ++ ++++  ++e    +a G  d+a  l+
  MMETSP1137-20121227|2401_1 34 LGEHNFWRWAIRTAMRM-QHESASALARGGRDVASLLE 70
                6899***9987777776.56667778888888886655 PP

  == domain 2    score: 33.0 bits;  conditional E-value: 5.5e-12
   TIGR01934  36 eeekeekvlDvatGtGdlaielakkaeakvtgvDlseemLevakkkakekeeanvefieadaeeLpfednsfdavtiafGlRNvtd..iekaLkelaRVlkpgg 137
                     ++kvlD+++GtG  ++ +      + +gvD s  mL +ak + +     +++ + ++ae+   ed+  d+vti fG+  + +  +++ L++++RV + + 
  MMETSP1137-20121227|2401_1 143 SIPPSAKVLDLCCGTGFSSTPWG-----NTLGVDTSIPMLTMAKLRNP-----RLKVQRGNAETYG-EDEGHDIVTIMFGFHEMPQfaRRRILRNAMRVARSHV 235
                 344789**********9886665.....567***************64.....5788999999875.9***************997335789*******88654 PP

>> TIGR02752  MenG_heptapren: 2-heptaprenyl-1,4-naphthoquinone methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.9   0.0   4.1e-09   5.6e-06      38     148 ..     139     238 ..     133     251 .. 0.81

  Alignments for each domain:
  == domain 1    score: 23.9 bits;  conditional E-value: 4.1e-09
   TIGR02752  38 mkrmnvqkgkkaldvccgtadwaialaeavgkegevkgldfsenmlsvgkekvkdaklenvelvhgnamelpyednsfdyvtigfglrnvpdyl..qvlkemarvvkpggkvv 148
                 m ++++   +k+ld+ccgt+  +        + g+  g+d s  ml+++k +       ++++  gna     ed+  d vti fg+ ++p++   ++l++ +rv++    vv
  MMETSP1137-20121227|2401_1 139 MVHLSIPPSAKVLDLCCGTGFSS-------TPWGNTLGVDTSIPMLTMAKLR-----NPRLKVQRGNAETY-GEDEGHDIVTIMFGFHEMPQFArrRILRNAMRVARSHVLVV 238
                 55667777899********9654.......5789999*********998654.....45678899**9665.58999***************973369*******98766655 PP

>> TIGR02072  BioC: biotin biosynthesis protein BioC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.0   5.7e-06    0.0078      35     101 ..     147     206 ..     137     239 .. 0.84

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 5.7e-06
   TIGR02072  35 pakvLdiGcGtGiltrallkrfpqaelialDiseemleqakkklsnvqficgdieklplekksfDli 101
                  akvLd+ cGtG+ +  +       + + +D s +ml +ak ++++++++ g++e+   e++  D++
  MMETSP1137-20121227|2401_1 147 SAKVLDLCCGTGFSSTPWG------NTLGVDTSIPMLTMAKLRNPRLKVQRGNAETYG-EDEGHDIV 206
                 579*********7776665......457899**********99999999999999987.55556665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (310 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       107  (0.0260848); expected 82.0 (0.02)
Passed bias filter:                      102  (0.0248659); expected 82.0 (0.02)
Passed Vit filter:                        19  (0.00463189); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.29u 0.16s 00:00:00.44 Elapsed: 00:00:00.43
# Mc/sec: 951.55
//
Query:       MMETSP1137-20121227|2404_1  [L=650]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (650 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       197  (0.0480254); expected 82.0 (0.02)
Passed bias filter:                      148  (0.03608); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.48u 0.16s 00:00:00.64 Elapsed: 00:00:00.63
# Mc/sec: 1361.79
//
Query:       MMETSP1137-20121227|2405_1  [L=128]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (128 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        50  (0.0121892); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.16s 00:00:00.32 Elapsed: 00:00:00.23
# Mc/sec: 734.55
//
Query:       MMETSP1137-20121227|2406_1  [L=334]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.5e-19   67.3   0.1    4.4e-19   66.5   0.0    1.3  1  TIGR02007 fdx_isc: ferredoxin, 2Fe-2S type, ISC system


Domain annotation for each model (and alignments):
>> TIGR02007  fdx_isc: ferredoxin, 2Fe-2S type, ISC system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.5   0.0   1.1e-22   4.4e-19      18     107 ..     156     253 ..     146     256 .. 0.83

  Alignments for each domain:
  == domain 1    score: 66.5 bits;  conditional E-value: 1.1e-22
   TIGR02007  18 veakeGetildval.....kaeieiehacekscacttchvivrkGf.dsleeasekeedlldkawGleaesrlscqavvade.d.lvveipkysinha 107
                 ++ k G+++l +a+     +a + +e +ce s ac+tchv+v + f d l e +e+e+d+ld a  l ++srl+cq+v+ ++ d ++v +p ys n+ 
  MMETSP1137-20121227|2406_1 156 INGKVGDNLLYLAHryqkeNAALALEGSCEASLACSTCHVVVSQQFyDLLPEPKEEEDDMLDLAACLTSTSRLGCQIVLEKNlDgIEVTLPAYSRNYY 253
                 5667899999888722222356789*****************988747789**************************9975323499********996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (334 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        97  (0.023647); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.26u 0.14s 00:00:00.40 Elapsed: 00:00:00.54
# Mc/sec: 816.38
//
Query:       MMETSP1137-20121227|2407_1  [L=230]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (230 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        70  (0.0170648); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.18s 00:00:00.38 Elapsed: 00:00:00.56
# Mc/sec: 532.59
//
Query:       MMETSP1137-20121227|2409_1  [L=399]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (399 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        72  (0.0175524); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.17s 00:00:00.46 Elapsed: 00:00:00.37
# Mc/sec: 1423.34
//
Query:       MMETSP1137-20121227|2410_1  [L=81]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (81 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        81  (0.0197465); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.15s 00:00:00.28 Elapsed: 00:00:00.30
# Mc/sec: 356.37
//
Query:       MMETSP1137-20121227|2411_1  [L=562]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (562 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        79  (0.0192589); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.16s 00:00:00.53 Elapsed: 00:00:00.47
# Mc/sec: 1578.25
//
Query:       MMETSP1137-20121227|2412_1  [L=225]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (225 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        53  (0.0129205); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.16s 00:00:00.36 Elapsed: 00:00:00.36
# Mc/sec: 824.93
//
Query:       MMETSP1137-20121227|2413_1  [L=151]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.8e-06   25.7   0.1    2.8e-06   25.1   0.1    1.3  1  TIGR00008 infA: translation initiation factor IF-1


Domain annotation for each model (and alignments):
>> TIGR00008  infA: translation initiation factor IF-1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.1   0.1   6.9e-10   2.8e-06       6      56 ..      68     117 ..      63     121 .. 0.89

  Alignments for each domain:
  == domain 1    score: 25.1 bits;  conditional E-value: 6.9e-10
   TIGR00008   6 eleGkvveslpnamfrveleNgvevlahisGkirknyiriLpgDkVkvels 56 
                   +G+v+ s+ +  f+v+l  g +v++ i+Gk ++ + +i  +D Vkv+++
  MMETSP1137-20121227|2413_1  68 VYTGTVIASI-GRLFEVKLTDGRVVKGKIAGKAKHARQKITADDLVKVQFA 117
                 5789999887.689**********************************975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (151 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       127  (0.0309605); expected 82.0 (0.02)
Passed bias filter:                      108  (0.0263286); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.17u 0.15s 00:00:00.32 Elapsed: 00:00:00.33
# Mc/sec: 603.95
//
Query:       MMETSP1137-20121227|2414_1  [L=267]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (267 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       124  (0.0302292); expected 82.0 (0.02)
Passed bias filter:                      113  (0.0275475); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.11s 00:00:00.36 Elapsed: 00:00:00.68
# Mc/sec: 518.25
//
Query:       MMETSP1137-20121227|2415_1  [L=142]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.077   10.7   1.4       0.16    9.7   1.0    1.5  1  TIGR01605 PYST-D: Plasmodium yoelii subtelomeric family PYST-D


Domain annotation for each model (and alignments):
>> TIGR01605  PYST-D: Plasmodium yoelii subtelomeric family PYST-D
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   1.0   3.9e-05      0.16      14      31 ..       6      23 ..       2      26 .. 0.85

  Alignments for each domain:
  == domain 1    score: 9.7 bits;  conditional E-value: 3.9e-05
   TIGR01605 14 LGlSitLhLIFYNvntnl 31
                +Gl  tL+L FYN + ++
  MMETSP1137-20121227|2415_1  6 IGLDQTLYLAFYNTIYYV 23
                69999********99776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (142 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        89  (0.0216967); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.16u 0.12s 00:00:00.28 Elapsed: 00:00:00.63
# Mc/sec: 297.50
//
Query:       MMETSP1137-20121227|2416_1  [L=265]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.035   11.4   0.1       0.22    8.8   0.1    2.1  1  TIGR03162 ribazole_cobC: alpha-ribazole phosphatase


Domain annotation for each model (and alignments):
>> TIGR03162  ribazole_cobC: alpha-ribazole phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   0.1   5.3e-05      0.22       1      37 [.     105     142 ..     105     198 .. 0.82

  Alignments for each domain:
  == domain 1    score: 8.8 bits;  conditional E-value: 5.3e-05
   TIGR03162   1 lyLiRHgevevnk.gkcYGqtDvpLaekgeeqaaalre 37 
                 +y++RHge ++n+  + +G+   ++ae+ + q      
  MMETSP1137-20121227|2416_1 105 VYFVRHGEAAHNAaAVEFGKKPAGIAEDSHGQHPYRDP 142
                 79*******988615788******99999888665555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (265 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       136  (0.0331546); expected 82.0 (0.02)
Passed bias filter:                      109  (0.0265724); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.24u 0.14s 00:00:00.38 Elapsed: 00:00:00.39
# Mc/sec: 896.85
//
Query:       MMETSP1137-20121227|2417_1  [L=238]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.3e-07   29.5   0.0      2e-07   28.9   0.0    1.2  1  TIGR02072 BioC: biotin biosynthesis protein BioC
      5e-05   19.8   0.0    6.4e-05   19.4   0.0    1.1  1  TIGR04074 bacter_Hen1: 3' terminal RNA ribose 2'-O-methyltransferase Hen1
    0.00021   18.4   0.0    0.00023   18.3   0.0    1.2  1  TIGR03438 TIGR03438: probable methyltransferase
     0.0012   16.0   0.0     0.0021   15.2   0.0    1.3  1  TIGR01983 UbiG: 3-demethylubiquinone-9 3-O-methyltransferase


Domain annotation for each model (and alignments):
>> TIGR02072  BioC: biotin biosynthesis protein BioC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.9   0.0   1.9e-10     2e-07      32     114 ..      54     143 ..      36     155 .. 0.87

  Alignments for each domain:
  == domain 1    score: 28.9 bits;  conditional E-value: 1.9e-10
   TIGR02072  32 kfepakvLdiGcGtGiltrallkrfpqaelialDiseemleqakkkls.......nvqficgdieklplekksfDlivSnlalQWlddls 114
                  fe+a+v++ G G G+l ++ll+++++ ++  +Di+e +le a k+l        ++  + g+++ ++l+  ++D+ vS +++Q + + s
  MMETSP1137-20121227|2417_1  54 IFENATVMEYGIGGGLLGKHLLEKYNARHYXGVDIAERQLEEASKRLDdccrykySRVKVDGSLNAADLQPFRIDVFVSQAVMQHFPSAS 143
                 68999******************************************9***9988777889999********************887665 PP

>> TIGR04074  bacter_Hen1: 3' terminal RNA ribose 2'-O-methyltransferase Hen1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.0   6.2e-08   6.4e-05     283     366 ..      57     137 ..      49     154 .. 0.81

  Alignments for each domain:
  == domain 1    score: 19.4 bits;  conditional E-value: 6.2e-08
   TIGR04074 283 arsvlDlGcGegkLlkaLlaekqfekivgvdvsareLekakrrlkldrlsekqrervellqssltYrDkrlkgfdaavlvevie 366
                   +v++ G G g L k+Ll++ ++++  gvd++ r+Le+a++rl+  +  + + +rv++  +sl   D +   +d  v   v+ 
  MMETSP1137-20121227|2417_1  57 NATVMEYGIGGGLLGKHLLEKYNARHYXGVDIAERQLEEASKRLD--DCCRYKYSRVKV-DGSLNAADLQPFRIDVFVSQAVMQ 137
                 5689***************************************95..777777777774.667766666555555555555555 PP

>> TIGR03438  TIGR03438: probable methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.0   2.3e-07   0.00023      59     117 ..      53     113 ..      38     191 .. 0.83

  Alignments for each domain:
  == domain 1    score: 18.3 bits;  conditional E-value: 2.3e-07
   TIGR03438  59 eavgeeaelvelGsGsseKvrlLLdaleeaaryvpidisaeaLkesaealaa....dypelev 117
                 ++ ++ a+++e+G+G     ++LL++++ a++y  +di+++ L+e+ ++l +    +y +++v
  MMETSP1137-20121227|2417_1  53 NIFEN-ATVMEYGIGGGLLGKHLLEKYN-ARHYXGVDIAERQLEEASKRLDDccryKYSRVKV 113
                 45555.99********************.9******************996422225555555 PP

>> TIGR01983  UbiG: 3-demethylubiquinone-9 3-O-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0     2e-06    0.0021      42     131 ..      49     141 ..      36     156 .. 0.72

  Alignments for each domain:
  == domain 1    score: 15.2 bits;  conditional E-value: 2e-06
   TIGR01983  42 kknekkleglkvlDvGcGgGllseslarlgae..vtgiDlseelievAklhakkdplkkieyelksveelaeee...kesfDvvlamEvlEHvad 131
                 +++ + +e+ +v++ G GgGll + l ++  +    g+D++e ++e A +    d+  + +y   +v+   +++     + Dv ++  v+ H ++
  MMETSP1137-20121227|2417_1  49 TQDGNIFENATVMEYGIGGGLLGKHLLEKYNArhYXGVDIAERQLEEASKRL--DDCCRYKYSRVKVDGSLNAAdlqPFRIDVFVSQAVMQHFPS 141
                 3444778899*************998655433379***********997654..44445788888887655543222445688888888888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (238 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        91  (0.0221843); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.23u 0.13s 00:00:00.36 Elapsed: 00:00:00.44
# Mc/sec: 713.94
//
Query:       MMETSP1137-20121227|2418_1  [L=132]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      0.007   13.4   0.2     0.0078   13.2   0.1    1.0  1  TIGR01349 PDHac_trf_mito: pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase
  ------ inclusion threshold ------
        0.1   10.4   8.2       0.12   10.2   5.7    1.2  1  TIGR03499 FlhF: flagellar biosynthesis protein FlhF
        0.7    6.9  21.4       0.79    6.7  14.8    1.2  1  TIGR02794 tolA_full: protein TolA
        2.9    4.7  13.4        3.2    4.6   9.3    1.1  1  TIGR01628 PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family


Domain annotation for each model (and alignments):
>> TIGR01349  PDHac_trf_mito: pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   0.1   7.6e-06    0.0078      12     133 ..       7     127 ..       3     132 .] 0.67

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 7.6e-06
   TIGR01349  12 eeGnlakwkkkeGDkvkeGdviaeietDkAtldvesqeegylakilvpegtkdvpvnkliavlveekedvedavknyklessasapkpkekaeqsaeesae.sakseasaekakessseaeas 133
                 + G+l +  k++ Dkvk+ +   e+ t+ A+ + + +++  +++++ +   k++ v ++ a+ ve+k+++   ++  +++ s + + p+++a+q ++   + ++++   +++++++  ++++ 
  MMETSP1137-20121227|2418_1   7 TFGDLLQQLKNHKDKVKPNQ-WEELCTNVAQFNQKRVGKQHVIRMMQELFGKEL-VTTVAALAVEQKKAKLRQQRGEQPQPSLAPQPPAQTAPQRPDVPPQqAQQQLRLQQQQQQQHLQQQQQ 127
                 679999999********976.69**********************999988865.77888888888888885555555555544455677777555444442223333333333333333322 PP

>> TIGR03499  FlhF: flagellar biosynthesis protein FlhF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   5.7   0.00011      0.12      23     108 ..      31     128 ..      11     132 .] 0.54

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 0.00011
   TIGR03499  23 GpdavIlstrkvrkg.......glfskkkvevvaaideee..........sasaaseeeeakkaleeaepkklskaeekeekekeaeekaaeaaqeaekklee 108
                  +++   ++++v k+        lf+k+ v  vaa+  e+          +     +++++ + +++a+++++++   +++++++ + ++++++q+ ++++++
  MMETSP1137-20121227|2418_1  31 CTNVAQFNQKRVGKQhvirmmqELFGKELVTTVAALAVEQkkaklrqqrgE-----QPQPSLAPQPPAQTAPQRPDVPPQQAQQQLRLQQQQQQQHLQQQQQQ 128
                 555556666666666677777789**********99998866766433321.....22222222223333333333333333333332222222222222222 PP

>> TIGR02794  tolA_full: protein TolA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7  14.8   0.00077      0.79      36     108 ..      59     130 ..      30     132 .] 0.52

  Alignments for each domain:
  == domain 1    score: 6.7 bits;  conditional E-value: 0.00077
   TIGR02794  36 iiqAvlvDpaavaqqanrlqqqekkaakke...pkpeepkqerqkk.leqqaeeakkkqaaeqarqkelekqraaae 108
                 ++++v     av+q+ ++l+qq+ +++++    ++p++  ++r +   +q++++++ +q++ q++++++++q+   +
  MMETSP1137-20121227|2418_1  59 LVTTVA--ALAVEQKKAKLRQQRGEQPQPSlapQPPAQTAPQRPDVpPQQAQQQLRLQQQQQQQHLQQQQQQQ---Q 130
                 444433..45788888888888877777775532222222222222122222233333333333333332222...2 PP

>> TIGR01628  PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   9.3    0.0031       3.2     348     425 ..      52     129 ..      25     132 .] 0.62

  Alignments for each domain:
  == domain 1    score: 4.6 bits;  conditional E-value: 0.0031
   TIGR01628 348 gkilngkPLyval.AqrkeqRkarLqqqfmqasaesrqlsigspvigaanisgrh..qaaqqqavvtqavkqqlasqplnf 425
                  +++ gk L  ++ A   eq+ka+L+qq+ + +++ + l+ + p ++a + + ++  qa+qq  +++q+++q l++q+++ 
  MMETSP1137-20121227|2418_1  52 QELF-GKELVTTVaALAVEQKKAKLRQQRGE-QPQ-PSLAPQPPAQTAPQRPDVPpqQAQQQLRLQQQQQQQHLQQQQQQQ 129
                 4443.455555551567899******99985.333.345555566666655555543555555666666666666666543 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (132 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       445  (0.108484); expected 82.0 (0.02)
Passed bias filter:                      192  (0.0468064); expected 82.0 (0.02)
Passed Vit filter:                        22  (0.00536324); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.20u 0.15s 00:00:00.35 Elapsed: 00:00:00.36
# Mc/sec: 483.96
//
Query:       MMETSP1137-20121227|2419_1  [L=229]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (229 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        67  (0.0163335); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.15s 00:00:00.35 Elapsed: 00:00:00.50
# Mc/sec: 604.51
//
Query:       MMETSP1137-20121227|2420_1  [L=200]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.8e-17   60.3  17.1    7.9e-15   52.9   5.8    2.5  2  TIGR01100 V_ATP_synt_C: V-type ATPase, C subunit
     0.0044   14.9   1.6     0.0044   14.9   1.1    2.7  2  TIGR01260 ATP_synt_c: ATP synthase F0, C subunit


Domain annotation for each model (and alignments):
>> TIGR01100  V_ATP_synt_C: V-type ATPase, C subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.9   5.8   3.8e-18   7.9e-15       2     105 ..      43     155 ..      42     158 .. 0.88
   2 !   13.5   1.2   6.7e-06     0.014      26      67 ..     154     195 ..     153     199 .. 0.90

  Alignments for each domain:
  == domain 1    score: 52.9 bits;  conditional E-value: 3.8e-18
   TIGR01100   2 fgvlGaaaalvfsalGaayGtaksgvGiaalgvlrpelilksiipvvmaGiiaiyGlvvavliagslkeke........k.yslykgfihlgaGlavGlsglaaGlaiGivGd 105
                 f+++Gaa+a+ +s+lGaa+G   +g  +   +v  p +  k++i v++   +aiyG++v++++++++++ +        k +++++g+  + aG+++G+  la G+++Gi G 
  MMETSP1137-20121227|2420_1  43 FAFMGAACAIGLSVLGAAWGIFITGASLLGAAVRAPRIRSKNLISVIFCEAVAIYGVIVSIILHTKIEKPDltvdqxllKiVQMNAGYSIFWAGVCCGIGNLACGVCVGICGS 155
                 89***************************************************************99875322222222235677899999*******************996 PP

  == domain 2    score: 13.5 bits;  conditional E-value: 6.7e-06
   TIGR01100  26 gvGiaalgvlrpelilksiipvvmaGiiaiyGlvvavliags 67 
                 g G a     ++el +k ++  ++a  ++i+ ++va++++++
  MMETSP1137-20121227|2420_1 154 GSGCALADAQKAELFVKILVIEIFASALGIFAIIVAIIMSTN 195
                 6678888899*****************************987 PP

>> TIGR01260  ATP_synt_c: ATP synthase F0, C subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   1.1   2.1e-06    0.0044       3      55 ..      57     105 ..      55     106 .. 0.91
   2 ?    0.7   4.0     0.058   1.2e+02      27      55 ..     164     192 ..     135     194 .. 0.87

  Alignments for each domain:
  == domain 1    score: 14.9 bits;  conditional E-value: 2.1e-06
   TIGR01260   3 iGaaiGigilggKflEsaARQPelagllrtkmfivaglvdaipiiavviaLll 55 
                 +Gaa Gi i g+  l +a R P     +r+k +i +   +a++i++v ++++l
  MMETSP1137-20121227|2420_1  57 LGAAWGIFITGASLLGAAVRAP----RIRSKNLISVIFCEAVAIYGVIVSIIL 105
                 89*****999999999999965....799*********************997 PP

  == domain 2    score: 0.7 bits;  conditional E-value: 0.058
   TIGR01260  27 agllrtkmfivaglvdaipiiavviaLll 55 
                 +++l +k++++   + a +i+a+ +a+++
  MMETSP1137-20121227|2420_1 164 KAELFVKILVIEIFASALGIFAIIVAIIM 192
                 67889999******************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (200 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       236  (0.0575329); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.21u 0.11s 00:00:00.32 Elapsed: 00:00:00.46
# Mc/sec: 573.87
//
Query:       MMETSP1137-20121227|2421_1  [L=488]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (488 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        83  (0.020234); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.13s 00:00:00.45 Elapsed: 00:00:00.54
# Mc/sec: 1192.79
//
Query:       MMETSP1137-20121227|2422_1  [L=333]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (333 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        89  (0.0216967); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.19s 00:00:00.44 Elapsed: 00:00:00.39
# Mc/sec: 1126.98
//
Query:       MMETSP1137-20121227|2423_1  [L=348]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (348 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        55  (0.0134081); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.17s 00:00:00.45 Elapsed: 00:00:00.40
# Mc/sec: 1148.31
//
Query:       MMETSP1137-20121227|2424_1  [L=115]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (115 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        63  (0.0153584); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.16s 00:00:00.31 Elapsed: 00:00:00.27
# Mc/sec: 562.18
//
Query:       MMETSP1137-20121227|2425_1  [L=261]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (261 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        74  (0.01804); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.14s 00:00:00.35 Elapsed: 00:00:00.35
# Mc/sec: 984.26
//
Query:       MMETSP1137-20121227|2426_1  [L=378]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.1e-55  183.8   0.3    9.1e-55  183.5   0.2    1.1  1  TIGR03625 L3_bact: 50S ribosomal protein L3
    1.7e-11   41.4   3.6      5e-10   36.6   2.0    2.7  2  TIGR03626 L3_arch: archaeal ribosomal protein L3


Domain annotation for each model (and alignments):
>> TIGR03625  L3_bact: 50S ribosomal protein L3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  183.5   0.2   4.4e-58   9.1e-55       2     202 .]     121     323 ..     120     323 .. 0.94

  Alignments for each domain:
  == domain 1    score: 183.5 bits;  conditional E-value: 4.4e-58
   TIGR03625   2 llgkkvGmtqifteegklvpvtvievepnvvvqvktkekdgyeavqlgfgekkekkvnkpeaghfkkagveakrvlkefrveeaeelevgdeikvdlfeegekvdvtgtskGkGfaGvikrhnfkggpasHGsskshRapGSig...qrqtpgrvfkgkkmaGhlGnekvtvqnLevvkvdaeknlllvkGavpGakgslvlvk 202
                  lg k+Gmt+++t+ gk +p ++ie+++ +vvq+k + k+g+ a++lg+g +k+k++n+++ag+f+k ++  kr+++efrv+e++ l vg++i++ +f  g++vdv+g+skGkGf+Gv+     k  ++   + ++  apGS g    + ++ rvf+gkkm+G +Gn+++t+ nL v +vd+++nl+++ G++pG++g++v +k
  MMETSP1137-20121227|2426_1 121 ALGMKCGMTHTWTSWGKWIPLSIIEIQDVQVVQQKFEYKEGFFALKLGAGWQKRKRLNRAQAGMFEKFNLPLKRYMREFRVTEDAMLPVGTSITARHFVPGQYVDVQGVSKGKGFQGVMNGGASKVSQRRTAT-RFPIAPGSSGgaaGSMYATRVFPGKKMPGNMGNKRRTTMNLMVYRVDPKHNLIYLAGSIPGHRGAYVRIK 323
                 699********************************************************************************************************************98666666555555.99999**99955456789*************************************************997 PP

>> TIGR03626  L3_arch: archaeal ribosomal protein L3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0     0.068   1.4e+02      34      48 ..     117     131 ..      95     136 .. 0.83
   2 !   36.6   2.0   2.4e-13     5e-10     180     278 ..     210     310 ..     203     342 .. 0.83

  Alignments for each domain:
  == domain 1    score: -1.0 bits;  conditional E-value: 0.068
   TIGR03626  34 kllafagykvGmtHv 48 
                 k  +  g k GmtH+
  MMETSP1137-20121227|2426_1 117 KRCGALGMKCGMTHT 131
                 56678899******7 PP

  == domain 2    score: 36.6 bits;  conditional E-value: 2.4e-13
   TIGR03626 180 gkeisvkdvfkeGelvDviavtkGkGfqGvvkRfgvkllkrkhkrk...kkeRkvGtlgpwtpsrvrwtvpqaGqmGyhqRteynkrilkigedgeeitpkg 278
                 g++i+++  f +G++vDv +v kGkGfqGv+     k+ +r+++ +         G+ g++ ++rv+    ++G mG ++Rt +n  + +++ +++ i  +g
  MMETSP1137-20121227|2426_1 210 GTSITARH-FVPGQYVDVQGVSKGKGFQGVMNGGASKVSQRRTATRfpiAPGSSGGAAGSMYATRVFPGKKMPGNMGNKRRTTMNLMVYRVDPKHNLIYLAG 310
                 56666554.789********************98888888887776222345678999******************************99998877776665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (378 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        86  (0.0209654); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.31u 0.12s 00:00:00.43 Elapsed: 00:00:00.56
# Mc/sec: 875.30
//
Query:       MMETSP1137-20121227|2427_1  [L=227]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00074   16.3   3.3    0.00099   15.9   2.3    1.1  1  TIGR03923 T7SS_EccE: type VII secretion protein EccE


Domain annotation for each model (and alignments):
>> TIGR03923  T7SS_EccE: type VII secretion protein EccE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   2.3   2.4e-07   0.00099       4      89 ..      53     140 ..      51     156 .. 0.76

  Alignments for each domain:
  == domain 1    score: 15.9 bits;  conditional E-value: 2.4e-07
   TIGR03923   4 tlavlvvlqvavlaawvatrqaaaawwva....lvvAvvvllllfvrvrgrtvtewlaralallrRrrrappaaadpaaldverdrdpvG 89 
                 +l++lv+   ++ aa  +t+  +aa++va    l +A+++++++f r r+r    +l r  +++rR+ +   a + ++a+d  + ++p+G
  MMETSP1137-20121227|2427_1  53 PLRLLVPSSXVATAAITITTA-TAAAAVAlpadLLAAIAAAAFAFRRPRRRVCLLLLPRLARIRRRDHTI-LAKNLFVAVDSMHRNRPYG 140
                 578999999999999444444.233333311135678888889999999999999999999999999887.7799999999999999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (227 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       111  (0.02706); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.22u 0.12s 00:00:00.34 Elapsed: 00:00:00.33
# Mc/sec: 907.93
//
Query:       MMETSP1137-20121227|2428_1  [L=284]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (284 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        77  (0.0187713); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.12s 00:00:00.36 Elapsed: 00:00:00.39
# Mc/sec: 961.15
//
Query:       MMETSP1137-20121227|2429_1  [L=148]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (148 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        66  (0.0160897); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.15s 00:00:00.31 Elapsed: 00:00:00.31
# Mc/sec: 630.14
//
Query:       MMETSP1137-20121227|2430_1  [L=502]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.9e-72  242.2   0.0    2.4e-72  241.8   0.0    1.1  1  TIGR01578 MiaB-like-B: MiaB-like tRNA modifying enzyme, archaeal-type
    4.5e-53  178.4   0.0    5.7e-53  178.1   0.0    1.1  1  TIGR00089 TIGR00089: radical SAM methylthiotransferase, MiaB/RimO family
    9.1e-39  131.7   0.0    1.2e-38  131.3   0.0    1.1  1  TIGR01579 MiaB-like-C: MiaB-like tRNA modifying enzyme
    1.8e-34  117.3   0.0    2.5e-34  116.9   0.0    1.1  1  TIGR01574 miaB-methiolase: tRNA-i(6)A37 thiotransferase enzyme MiaB
    2.7e-25   87.1   0.0    3.6e-25   86.7   0.0    1.1  1  TIGR01125 TIGR01125: ribosomal protein S12 methylthiotransferase RimO
    1.4e-12   44.9   0.0    2.1e-12   44.4   0.0    1.3  1  TIGR04013 B12_SAM_MJ_1487: B12-binding domain/radical SAM domain protein, MJ_1487 family
    6.3e-08   29.6   0.0    8.7e-08   29.2   0.0    1.1  1  TIGR04014 B12_SAM_MJ_0865: B12-binding domain/radical SAM domain protein, MJ_0865 family
     0.0027   14.1   0.0     0.0037   13.7   0.0    1.1  1  TIGR03904 SAM_YgiQ: uncharacterized radical SAM protein YgiQ
     0.0044   13.8   0.0     0.0061   13.3   0.0    1.1  1  TIGR03471 HpnJ: hopanoid biosynthesis associated radical SAM protein HpnJ
      0.006   13.3   0.0     0.0088   12.7   0.0    1.1  1  TIGR04107 rSAM_HutW: putative heme utilization radical SAM enzyme HutW
     0.0091   13.0   0.0      0.013   12.4   0.0    1.1  1  TIGR03994 rSAM_HemZ: coproporphyrinogen dehydrogenase HemZ
  ------ inclusion threshold ------
      0.017   12.1   0.0      0.025   11.5   0.0    1.1  1  TIGR01212 TIGR01212: radical SAM protein, TIGR01212 family
      0.032   11.4   0.0      0.052   10.7   0.0    1.2  1  TIGR00510 lipA: lipoyl synthase


Domain annotation for each model (and alignments):
>> TIGR01578  MiaB-like-B: MiaB-like tRNA modifying enzyme, archaeal-type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  241.8   0.0   7.7e-75   2.4e-72     169     420 ..      43     299 ..      37     300 .. 0.94

  Alignments for each domain:
  == domain 1    score: 241.8 bits;  conditional E-value: 7.7e-75
   TIGR01578 169 ekarelvaeGakeikltsqDtaaYGkDiGerLpeLlr.liteiegefrlRVGmmnpknvleildelievfqsekvykfLHlPvqSgsdsvLkemkReytvddfedivekfrerledltlstDiivGfptEtdddfeetlellrklrpekinvtkfspRpgteaaklkrldakikkkrskaltklkeevllekkenliGkrekVlvte....egvGev..lkdeddatvqvvisekeleigefakveitgaktayligei 420
                   +  + +eG+ e++lts+D +aYG+D+G++Lp Ll+ +++ +++  +lRVGm+np+++l+ l  +++ +++++ y fLH+PvqSgs+ vL++m+Reyt+++f ++ +++ + ++ l l+tDii+G p+Et++d+++tl l+rk+r++ +n+++f+pRpgt aak+kr++++++k+r+++l+ l +  ++ +++ l+ ++ +Vlvt+    +  G +  l  +d+ +vqv+      ++g + +v++t+++++ +++ +
  MMETSP1137-20121227|2430_1  43 RXVADSAHEGVAEVWLTSEDAGAYGRDLGSSLPSLLEaMLERVPEGRMLRVGMTNPPYILQQLPAIAKLLSHPRCYAFLHVPVQSGSNRVLHTMRREYTREEFCRVADTLLASVPSLLLATDIICGMPGETEEDHQQTLALVRKYRFPVLNISQFYPRPGTLAAKMKRVPTHVVKERTRELSALFN--SYTTFDTLLNTTLEVLVTDstavSRPGATpqLIAHDKGYVQVLLPYVPEHMGCWLQVRVTHTSKFHVLATV 299
                 56677899********************************************************************************************************************************************************************************98..5889***************887745555422778999999***9999999***********9999988765 PP

>> TIGR00089  TIGR00089: radical SAM methylthiotransferase, MiaB/RimO family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  178.1   0.0   1.8e-55   5.7e-53     174     427 ..      42     295 ..      36     297 .. 0.90

  Alignments for each domain:
  == domain 1    score: 178.1 bits;  conditional E-value: 1.8e-55
   TIGR00089 174 leevkelvskgvkEivLlgqnvnaYGkdlegkskladLlke.lekiegierirvtslhpkdvtdelielia..eeekvlkflhlplQsgsdeiLkrMrRkytreeyleiveklrakvpdvalstdiIVGFPgEteedFeetldlveevkfdklhvfkYspregtpaaelkdqvpeevkkeRlerLkelqkeiskeknkkyvGktlevLvee.eekkkeg...elsgrtennklvvvegkeekeligkfvkvkikeakeesl 427
                 ++ v++ +++gv E++L++++ +aYG+dl   s+l +Ll++ le+++    +rv++ +p  + ++l ++ +  ++++ + flh+p+Qsgs+++L  MrR+ytree+ ++ ++l a+vp + l+tdiI G PgEteed ++tl lv++ +f  l+++++ pr+gt aa+ +++vp++v keR ++L++l ++  +   + ++++tlevLv++ +  +++g   +l+++++ +  v ++    +e++g +++v++++++++++
  MMETSP1137-20121227|2430_1  42 VRXVADSAHEGVAEVWLTSEDAGAYGRDLG--SSLPSLLEAmLERVPEGRMLRVGMTNPPYILQQLPAIAKllSHPRCYAFLHVPVQSGSNRVLHTMRREYTREEFCRVADTLLASVPSLLLATDIICGMPGETEEDHQQTLALVRKYRFPVLNISQFYPRPGTLAAK-MKRVPTHVVKERTRELSALFNS--YTTFDTLLNTTLEVLVTDsTAVSRPGatpQLIAHDKGYVQVLLPY--VPEHMGCWLQVRVTHTSKFHV 295
                 567888999*******************99..7******972566********************9665541166********************************************************************************************5.567****************976..567899***********8433333338889*************97..4789************99886 PP

>> TIGR01579  MiaB-like-C: MiaB-like tRNA modifying enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  131.3   0.0   3.7e-41   1.2e-38     177     385 ..      45     251 ..      39     287 .. 0.85

  Alignments for each domain:
  == domain 1    score: 131.3 bits;  conditional E-value: 3.7e-41
   TIGR01579 177 vkalvakgykEvvltGvnlssYgedlenglslakLlekilk.ieglkriRlsSlepeevdeellel..iasekklcphlHlslQsgsdkvLkrmrRkytrddilklveklrsvrpelalgtDiIvgfPgEteedfqetlrlvkelelsklHiFpySaRegTkaaamdakveetiakeRvkalkelaekvkqevlkkllgkelevlvekskae 385
                 v+  +++g +Ev lt  + ++Yg+dl  g+sl +Lle +l+ +++   +R++  +p  + ++l ++  + s+++    lH+ +Qsgs++vL+ mrR+ytr+++ ++ ++l ++ p+l l+tDiI g PgEteed+q+tl lv++ ++  l i ++ +R+gT aa+m+ +v+++++keR ++l++l +  ++ +   ll+++levlv  s+a 
  MMETSP1137-20121227|2430_1  45 VADSAHEGVAEVWLTSEDAGAYGRDL--GSSLPSLLEAMLErVPEGRMLRVGMTNPPYILQQLPAIakLLSHPRCYAFLHVPVQSGSNRVLHTMRREYTREEFCRVADTLLASVPSLLLATDIICGMPGETEEDHQQTLALVRKYRFPVLNISQFYPRPGTLAAKMK-RVPTHVVKERTRELSALFN--SYTTFDTLLNTTLEVLVTDSTAV 251
                 566678999***************99..79*******98766**************999988754411345899*********************************************************************************************.9*************99975..5677888999*******998764 PP

>> TIGR01574  miaB-methiolase: tRNA-i(6)A37 thiotransferase enzyme MiaB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  116.9   0.0   7.8e-37   2.5e-34     180     391 ..      43     250 ..      37     299 .. 0.81

  Alignments for each domain:
  == domain 1    score: 116.9 bits;  conditional E-value: 7.8e-37
   TIGR01574 180 qevaklaekGvkeitLLGqnvnayrGkdfegktvsfadLleelavkddierirftsshPkdldddl..ievlakesklvkllhlPvqsGssevLklmkrsytreeylelvrklkeavPnvslstdiivgfPgeteedfeetldllrevefdsafsfkyskregtpaadmkddvpeevkkerLqrlqalvneialkkvkkregktlkvLveeesr 391
                 + va  a++Gv e+ L   +  ay G+d   +  s+ + + e +    +  +r   + P  +  +l  i+ l  +++   +lh+PvqsGs++vL++m+r+ytree+  ++  l ++vP + l+tdii g+Pgeteed ++tl l+r+ +f      ++ +r+gt aa+mk +vp +v ker + l al n+ ++      +++tl+vLv + ++
  MMETSP1137-20121227|2430_1  43 RXVADSAHEGVAEVWLTSEDAGAY-GRDLGSSLPSLLEAMLERVPEGRM--LRVGMTNPPYILQQLpaIAKLLSHPRCYAFLHVPVQSGSNRVLHTMRREYTREEFCRVADTLLASVPSLLLATDIICGMPGETEEDHQQTLALVRKYRFPVLNISQFYPRPGTLAAKMK-RVPTHVVKERTRELSALFNSYTT--FDTLLNTTLEVLVTDSTA 250
                 56888999****************.**9976655544433333334444..5555555555555543388999************************************************************************************************7.8*****************99875..67899********87654 PP

>> TIGR01125  TIGR01125: ribosomal protein S12 methylthiotransferase RimO
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.7   0.0   1.2e-27   3.6e-25     173     380 ..      44     248 ..      37     295 .. 0.88

  Alignments for each domain:
  == domain 1    score: 86.7 bits;  conditional E-value: 1.2e-27
   TIGR01125 173 eakrLvdegvkeiiliaqdttaYGvDlktdreaklaeLlek.Lekle.ikWirllYlyPdelvdev..ielmaesekvlpYlDiPlqhasdkiLklmrrpksaekqldlieklrekvpelvlrstfivGfPgeteedfqeLldfveearldklGvftysdeegtdaaeLpdavpeevkeerlerlmalqqrisakkleelvGkklevlidek 380
                  + + ++egv e+ l + d +aYG Dl     ++l +Lle+ Le+++    +r+    P  + +++  i  + ++++   +l +P+q  s+++L++mrr + +e+   + + l + vp l l + +i G Pgeteed q+ l  v++ r+  l + ++ +  gt aa+++ +vp +v +er+ +l+al ++      + l+  +levl+ + 
  MMETSP1137-20121227|2430_1  44 XVADSAHEGVAEVWLTSEDAGAYGRDLG----SSLPSLLEAmLERVPeGRMLRVGMTNPPYILQQLpaIAKLLSHPRCYAFLHVPVQSGSNRVLHTMRREYTREEFCRVADTLLASVPSLLLATDIICGMPGETEEDHQQTLALVRKYRFPVLNISQFYPRPGTLAAKMK-RVPTHVVKERTRELSALFNS--YTTFDTLLNTTLEVLVTDS 248
                 56667899*******************9....88888888625667666789999999988887755588889999*******************************************************************************************996.7***************9865..5567889999999988664 PP

>> TIGR04013  B12_SAM_MJ_1487: B12-binding domain/radical SAM domain protein, MJ_1487 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.4   0.0   6.8e-15   2.1e-12     268     372 ..     120     226 ..      42     231 .. 0.84

  Alignments for each domain:
  == domain 1    score: 44.4 bits;  conditional E-value: 6.8e-15
   TIGR04013 268 rlviGaQsgsdrvLkaikRgHtvedvveavelalea..gltpvvDfIlGlPgeteedqeatlelikklvkkgakvhaHtfmpLPgtplenak..psklseevkkelgkl 372
                  l++  Qsgs+rvL++++R  t e+  + ++++l     l    D+I G+Pgeteed ++tl+l++k         + +f p Pgt  +++k  p+++ +e ++el+ l
  MMETSP1137-20121227|2430_1 120 FLHVPVQSGSNRVLHTMRREYTREEFCRVADTLLASvpSLLLATDIICGMPGETEEDHQQTLALVRKYRF--PVLNISQFYPRPGTLAAKMKrvPTHVVKERTRELSAL 226
                 588999********************999997655323899*************************9654..368899********98876523777777777777766 PP

>> TIGR04014  B12_SAM_MJ_0865: B12-binding domain/radical SAM domain protein, MJ_0865 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.2   0.0   2.7e-10   8.7e-08     273     358 ..     122     208 ..     111     254 .. 0.82

  Alignments for each domain:
  == domain 1    score: 29.2 bits;  conditional E-value: 2.7e-10
   TIGR04014 273 ffGiesGsdrilrlmkkGitvdkvleave..larevgvkvaGsfivgyPgeteedyeatkdlleelelddvfvsiaePiPgtelaelv 358
                    ++sGs+r+l++m++  t+++ ++  +  la   ++  a   i g Pgeteed+++t  l+ +  +  + +s   P Pgt  a+ +
  MMETSP1137-20121227|2430_1 122 HVPVQSGSNRVLHTMRREYTREEFCRVADtlLASVPSLLLATDIICGMPGETEEDHQQTLALVRKYRFPVLNISQFYPRPGTLAAK-M 208
                 55689******************99987633678889*******************************************995443.2 PP

>> TIGR03904  SAM_YgiQ: uncharacterized radical SAM protein YgiQ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   0.0   1.2e-05    0.0037     481     528 ..     161     208 ..     121     222 .. 0.85

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 1.2e-05
   TIGR03904 481 lvpylisahPgctledmvelaeylkklklkpeqvqdftPtPmtlstam 528
                 l + +i + Pg t+ed ++  ++++k ++ + ++ +f+P P+tl++ m
  MMETSP1137-20121227|2430_1 161 LATDIICGMPGETEEDHQQTLALVRKYRFPVLNISQFYPRPGTLAAKM 208
                 55568999*************************************999 PP

>> TIGR03471  HpnJ: hopanoid biosynthesis associated radical SAM protein HpnJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   0.0   1.9e-05    0.0061     301     384 ..     121     206 ..     110     224 .. 0.82

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 1.9e-05
   TIGR03471 301 llvGyesGdqqilknikkGlkvevarkftkdc..kklGlkvhGtfilGlPgetretirktiefakeldpetiqvslaapyPGtely 384
                 l v  +sG++++l+ +++  + e   + ++        l +  + i G+Pget+e  ++t++  ++     +++s   p PGt   
  MMETSP1137-20121227|2430_1 121 LHVPVQSGSNRVLHTMRREYTREEFCRVADTLlaSVPSLLLATDIICGMPGETEEDHQQTLALVRKYRFPVLNISQFYPRPGTLAA 206
                 6677899999999999999998887776655311334688899***************************************9765 PP

>> TIGR04107  rSAM_HutW: putative heme utilization radical SAM enzyme HutW
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.7   0.0   2.8e-05    0.0088     158     240 ..     124     207 ..     120     236 .. 0.81

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 2.8e-05
   TIGR04107 158 GvQsfdtevRrrlgRlddreevlerleeLsa.ldraavviDLlyGLpgqteeiweeDleivaelgldGvdlYaLnllpgtplak 240
                  vQs +++v +++ R   ree ++  ++L a   +  + +D++ G+pg tee+ ++ l+ v++ +   +++ ++   pgt  ak
  MMETSP1137-20121227|2430_1 124 PVQSGSNRVLHTMRREYTREEFCRVADTLLAsVPSLLLATDIICGMPGETEEDHQQTLALVRKYRFPVLNISQFYPRPGTLAAK 207
                 59**********************9999766156677889********************999998888888877777665554 PP

>> TIGR03994  rSAM_HemZ: coproporphyrinogen dehydrogenase HemZ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.4   0.0   4.2e-05     0.013     206     265 ..     126     186 ..     121     209 .. 0.88

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 4.2e-05
   TIGR03994 206 qtmndktLkliGRkHtvedvveafk.larelGfdninmDlivGLpgetleeveetleevkk 265
                 q+ ++++L+++ R++t e+++++ + l  ++    + +D+i+G+pget+e+ ++tl  v k
  MMETSP1137-20121227|2430_1 126 QSGSNRVLHTMRREYTREEFCRVADtLLASVPSLLLATDIICGMPGETEEDHQQTLALVRK 186
                 788899*************99976526677888899********************98876 PP

>> TIGR01212  TIGR01212: radical SAM protein, TIGR01212 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   7.9e-05     0.025     140     221 ..     120     203 ..     108     220 .. 0.82

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 7.9e-05
   TIGR01212 140 wvelGlqtahektlkkinRghdladyveavkk..vkkrgikvcshlivgLPgedreevletakivaeldvdgiklhpLhvvkGt 221
                 ++ + +q+  ++ l+ + R+++  ++ + + +  +   ++ + + +i g+Pge+ e+  +t+ +v +     + + + +   Gt
  MMETSP1137-20121227|2430_1 120 FLHVPVQSGSNRVLHTMRREYTREEFCRVADTllASVPSLLLATDIICGMPGETEEDHQQTLALVRKYRFPVLNISQFYPRPGT 203
                 567789*****************999887766115567899**********************999877776666666655555 PP

>> TIGR00510  lipA: lipoyl synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   0.00016     0.052     179     249 ..     131     203 ..     112     229 .. 0.85

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 0.00016
   TIGR00510 179 rltkevrdkadyrrslkllerakealPnlitksglmvGl.GeteeeilqvlkdlrdhgvkvvtlGq.ylrPsr 249
                 r+ +++r + + +   ++ +   + +P+l+  + ++ G+ Getee+ +q+l  +r+    v+ + q y rP  
  MMETSP1137-20121227|2430_1 131 RVLHTMRREYTREEFCRVADTLLASVPSLLLATDIICGMpGETEEDHQQTLALVRKYRFPVLNISQfYPRPGT 203
                 677778888888888899999999**************98*************************94446654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (502 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        90  (0.0219405); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                        13  (0.00316919); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.44u 0.16s 00:00:00.60 Elapsed: 00:00:00.74
# Mc/sec: 895.39
//
Query:       MMETSP1137-20121227|2431_1  [L=82]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (82 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        92  (0.0224281); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.15s 00:00:00.28 Elapsed: 00:00:00.37
# Mc/sec: 292.52
//
Query:       MMETSP1137-20121227|2432_1  [L=303]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.7e-08   32.1   0.0    2.2e-08   31.7   0.0    1.2  1  TIGR01096 3A0103s03R: lysine-arginine-ornithine-binding periplasmic protein
     0.0051   13.9   0.0     0.0083   13.2   0.0    1.3  1  TIGR02995 ectoine_ehuB: ectoine/hydroxyectoine ABC transporter solute-binding protein EhuB


Domain annotation for each model (and alignments):
>> TIGR01096  3A0103s03R: lysine-arginine-ornithine-binding periplasmic protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.7   0.0   1.1e-11   2.2e-08      22     149 ..      34     177 ..      14     229 .. 0.82

  Alignments for each domain:
  == domain 1    score: 31.7 bits;  conditional E-value: 1.1e-11
   TIGR01096  22 ke.ksvtigtetayapfeak...dang.....klvGFDvDlakalckeikvkckfveqnfdglipsLkakkvDvimatmsitdkrekaiaFsdpyyadgqgfvvkkdsklaktled........LdG.kkvgvqsGttteqflkde 149
                  + + +++g   +yapf+++   +a+      k+ G D+D    l+ ++ +++  v+ +++ l+  + +  +D+ + ++s+t +r+++  F+ py  d + +++  +s +  + ed        L+G  k++v++G t+e+ +++ 
  MMETSP1137-20121227|2432_1  34 LRtGVLRVGCPCDYAPFASPfelEAKDrpacwKVRGHDIDAIHSLADSLSATVSTVNAPWARLVERIDS--FDIGLGGISLTLQRQQHAFFTIPYFSDAKVLLALCQSIVLAAFEDegtqglrkLKGsLKIAVNEGGTNERTAQQL 177
                 55588999999999999875444333322233899******************************9986..9999***************************************************6369*********9988764 PP

>> TIGR02995  ectoine_ehuB: ectoine/hydroxyectoine ABC transporter solute-binding protein EhuB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   0.0   4.1e-06    0.0083       8     169 ..      12     184 ..       2     205 .. 0.76

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 4.1e-06
   TIGR02995   8 talaaiaavavaaasaltleelkeqGyvriaiane.vPfa....yvgadG....kvaGaaPdvarailkrlGiedvnasvteyGaliPGlkagrfdaiaaglfikPerckqvaftePnlslaeallvkkGnPkelksykdiakn......PevkvavvaGavevklareaGvkeeqi 169
                 ta+ + a   +++ ++  le + + G +r++   + +Pfa        d     kv G   d  + +  +l  + v ++ +++  l+   +   fd+   g+ ++ +r +   ft P +s+a+ ll        l +++d   +        +k+av  G+++++ a++ Gv+ e++
  MMETSP1137-20121227|2432_1  12 TAVYIAARGKPSSRKESALERVLRTGVLRVGCPCDyAPFAspfeLEAKDRpacwKVRGHDIDAIHSLADSLS-ATVSTVNAPWARLVE--RIDSFDIGLGGISLTLQRQQHAFFTIPYFSDAKVLL-ALCQSIVLAAFEDEGTQglrklkGSLKIAVNEGGTNERTAQQLGVPVEHL 184
                 34444444568999999************9975432555411114555533333888999998899988887.57899999*****97..6678***************************98765.56788999***997664222222689*******************99875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (303 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.25u 0.13s 00:00:00.38 Elapsed: 00:00:00.50
# Mc/sec: 799.85
//
Query:       MMETSP1137-20121227|2433_1  [L=350]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.8e-21   72.4   0.0    8.5e-21   71.6   0.0    1.3  1  TIGR03317 ygfZ_signature: folate-binding protein YgfZ
    0.00084   16.2   0.0     0.0013   15.5   0.0    1.2  1  TIGR00528 gcvT: glycine cleavage system T protein


Domain annotation for each model (and alignments):
>> TIGR03317  ygfZ_signature: folate-binding protein YgfZ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.6   0.0   4.1e-24   8.5e-21       3      65 ..     170     233 ..     168     234 .. 0.94

  Alignments for each domain:
  == domain 1    score: 71.6 bits;  conditional E-value: 4.1e-24
   TIGR03317   3 wellrieagipeieaels.eeflpqelnldalggvsfkKGCYvGQEvvaRmkyrgklkrrlvll 65 
                 ++l     g+p++ a +  +e+lp+e nl  l+gv f+KGCY+GQE++aR+++rg++++rlv++
  MMETSP1137-20121227|2433_1 170 YNLTLALLGVPNGHAHTPsGESLPLESNLXLLHGVAFDKGCYLGQELTARTHFRGVVRKRLVPV 233
                 666667789****************************************************997 PP

>> TIGR00528  gcvT: glycine cleavage system T protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   6.5e-07    0.0013      49     147 ..      20     119 ..       4     131 .. 0.82

  Alignments for each domain:
  == domain 1    score: 15.5 bits;  conditional E-value: 6.5e-07
   TIGR00528  49 shmgkvelsGskslkfLqrllanDvdaLtk.GkaqysvllnaqGGvvDDlivykegednrfllvvnaataekDlewlke.hleeevtldtlskeisllalq 147
                 s  g   l+G+++ k+++ l ++ + +L++   a+y+++lnaqG ++ D  +   +e+ r+l+ v aat     ++l+  +l+ +v++ + s e+++l+  
  MMETSP1137-20121227|2433_1  20 SERGVLALEGRDAKKLVHGLSTAHILELAPsDGATYTGFLNAQGRILCDGFLLAPEEE-RVLIDVEAATLPLLEQHLRRfKLRSKVNIADRSAELAVLSSA 119
                 66677899********************996779*************99999999888.9********988777777653677888888888888777655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (350 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        47  (0.0114578); expected 82.0 (0.02)
Passed bias filter:                       39  (0.00950756); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.26u 0.17s 00:00:00.43 Elapsed: 00:00:00.56
# Mc/sec: 824.93
//
Query:       MMETSP1137-20121227|2434_1  [L=348]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (348 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       230  (0.0560702); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.13s 00:00:00.41 Elapsed: 00:00:00.57
# Mc/sec: 791.93
//
Query:       MMETSP1137-20121227|2435_1  [L=364]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      0.003   14.8   0.0       0.98    6.5   0.0    2.2  2  TIGR03611 RutD: pyrimidine utilization protein D


Domain annotation for each model (and alignments):
>> TIGR03611  RutD: pyrimidine utilization protein D
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.1   0.0   0.00033       1.4      70     114 ..     223     267 ..     207     275 .. 0.86
   2 !    6.5   0.0   0.00024      0.98     195     246 ..     278     331 ..     273     336 .. 0.87

  Alignments for each domain:
  == domain 1    score: 6.1 bits;  conditional E-value: 0.00033
   TIGR03611  70 vlelldaldiekahvvGhalGgliglelalrkperlaklvlinaW 114
                  l+++ ++d +++  vG   Gg   +ela  +p+ l  +v++ + 
  MMETSP1137-20121227|2435_1 223 CLQAVANVDAAHIGAVGFCFGGPCVFELARCNPAALRAIVSLHGI 267
                 578888999999999************************998875 PP

  == domain 2    score: 6.5 bits;  conditional E-value: 0.00024
   TIGR03611 195 driklpvlliaakDDlLvPytqsseLaekLPd..aelklleyGghasnvtdpet 246
                  +++ +vll    DD +vP +  +    +L    ae +ll +Gg  ++ t+p +
  MMETSP1137-20121227|2435_1 278 AKMDARVLLCHGDDDPFVPAASIDACLTQLRSvgAEWQLLTFGGVRHSFTNPAQ 331
                 567889***************999999999743499**************9976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (364 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       104  (0.0253535); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.28u 0.11s 00:00:00.39 Elapsed: 00:00:00.38
# Mc/sec: 1264.32
//
Query:       MMETSP1137-20121227|2436_1  [L=274]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (274 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        72  (0.0175524); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.16s 00:00:00.38 Elapsed: 00:00:00.34
# Mc/sec: 1063.68
//
Query:       MMETSP1137-20121227|2437_1  [L=585]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.6e-32  110.1   0.0    3.6e-22   76.7   0.0    2.9  2  TIGR02409 carnitine_bodg: gamma-butyrobetaine hydroxylase
    8.1e-25   85.9   0.0    1.3e-19   68.8   0.0    2.2  2  TIGR02410 carnitine_TMLD: trimethyllysine dioxygenase


Domain annotation for each model (and alignments):
>> TIGR02409  carnitine_bodg: gamma-butyrobetaine hydroxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.4   0.0   4.1e-11   8.4e-08       2     102 ..      38     143 ..      37     219 .. 0.80
   2 !   76.7   0.0   1.7e-25   3.6e-22     218     365 ..     394     542 ..     384     543 .. 0.88

  Alignments for each domain:
  == domain 1    score: 29.4 bits;  conditional E-value: 4.1e-11
   TIGR02409   2 vevkWqdgkesrfpalWLRDncpdsdtrles...akarlllvldldveikikkviidddgnlvvifvpeghl..sefsaeWLkkraydkqelrerelaeeekqrWg 102
                 v+v+++dg   rf+ lWLRD c+ds+ +l+s     +   lv  ++    +k+v+++ +g  v+++++ g +  s+f+a++L++ a  + ++ e+ ++  + + W 
  MMETSP1137-20121227|2437_1  38 VDVSFSDGSCYRFHSLWLRDGCRDSTHVLQSserSLEASPLVSRFPRSAGAKGVEVNAQGTSVQVEWETGSVpkSTFNAGFLRAFADVAGKQLEPTASAAKAEDWF 143
                 7899*******************9999888732223344589**************************99854499*******98887777778877777777775 PP

  == domain 2    score: 76.7 bits;  conditional E-value: 1.7e-25
   TIGR02409 218 llvDGFavaeaLrkekpeafkiLsstsv....efreeGddkvdlrakakvieLdddgevvkirfnnasldavfdvevekvqdfYaAlrrfvelieepelkltfkleeGdlvlfdntRllHaRdafeakegkRhlqGaYaDkDvllsrlrvlr 365
                 +l DGFava aL+  kp+ f++Ls   +    + ++  +    + ++++v++ d dg+++++++   s ++++ v+ e+ + +++Al +f e++++pe++    +++G+l++++n+R +H+R + +   ++R++ G  + ++  +s +r ++
  MMETSP1137-20121227|2437_1 394 SLTDGFAVAYALKERKPHLFDLLSRHGMaagrRLEYYASGPLMFDTNHRVLNTDADGNLMRVQYHE-SYRTPLTVPYEDFEGYFEALATFYEMVHSPEFQTHLSVSAGQLLIMNNWRTMHGRAGLK--GKARTILGGTVTREAFYSAVRTME 542
                 689*********************98772222223333344556699******************9.66679*****************************************************9..899****************99987 PP

>> TIGR02410  carnitine_TMLD: trimethyllysine dioxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   1.5e-06    0.0031       1     137 [.      49     201 ..      49     214 .. 0.64
   2 !   68.8   0.0   6.3e-23   1.3e-19     210     360 ..     394     541 ..     386     543 .. 0.91

  Alignments for each domain:
  == domain 1    score: 14.9 bits;  conditional E-value: 1.5e-06
   TIGR02410   1 lfhfvwLRDnCtskelyhsatkqRllns...ldiaslseakkeaeveidedelrvkWkDgHv..skfeedwlvrhsyepkkekkkskkalklvakkiyekaeskklkkasakfkttldkld............lkkflkeiykyGfilvdnvpv 137
                 +fh +wLRD C+ + +   +   R l++   ++  + s   k  ev+ +++ ++v+W+ g v  s f+  +l+  +    k+ + +  a k  +  ++   +s+k+k +++    + d l              ++f+  ++  G+++v+++p 
  MMETSP1137-20121227|2437_1  49 RFHSLWLRDGCRDSTHVL-QSSERSLEAsplVSRFPRSAGAKGVEVNAQGTSVQVEWETGSVpkSTFNAGFLRAFADVAGKQLEPTASAAKAEDWFEFIDGKSQKAKAPETLQLWRADDLVipkfkhgelpsrRREFMMALMDPGVVIVEDMPE 201
                 59*********9776655.455565554122566668999999999************776433889999999877666666555554444444444544455555444443333333221224445555566667777777777777777775 PP

  == domain 2    score: 68.8 bits;  conditional E-value: 6.3e-23
   TIGR02410 210 vlvDvfkvaeklkkkapedfelLtkvkieahsagese.evfieaevlepvlkldpatgeleqvRwntsDRasldtlaksskeevpkfYkAleklskiikdpenevevklkpGevlifDnwRvlHaRtsFtGk.RrlCGaYltRDdflararll 360
                 +l D+f va  lk+++p  f+lL+++ ++a    e   +     ++ ++vl++d a+g+l++v + +s R++l  ++   +e+ + +++Al++++++++ pe++ ++++ +G++li++nwR +H+R   +Gk R + G  +tR+ f + +r++
  MMETSP1137-20121227|2437_1 394 SLTDGFAVAYALKERKPHLFDLLSRHGMAAGRRLEYYaSGPLMFDTNHRVLNTD-ADGNLMRVQYHESYRTPLT-VP---YEDFEGYFEALATFYEMVHSPEFQTHLSVSAGQLLIMNNWRTMHGRAGLKGKaRTILGGTVTREAFYSAVRTM 541
                 799*************************997665544267777788889****9.*****************77.55...999************************************************857799*********9999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (585 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        54  (0.0131643); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.15s 00:00:00.54 Elapsed: 00:00:00.45
# Mc/sec: 1715.86
//
Query:       MMETSP1137-20121227|2438_1  [L=248]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (248 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        77  (0.0187713); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.15s 00:00:00.35 Elapsed: 00:00:00.42
# Mc/sec: 779.36
//
Query:       MMETSP1137-20121227|2439_1  [L=146]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (146 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        58  (0.0141394); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.14s 00:00:00.31 Elapsed: 00:00:00.30
# Mc/sec: 642.35
//
Query:       MMETSP1137-20121227|2440_1  [L=653]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.7e-39  132.7   0.0    2.2e-38  129.7   0.0    1.9  1  TIGR01048 lysA: diaminopimelate decarboxylase
      6e-34  115.6   0.0    9.4e-30  101.8   0.0    2.2  2  TIGR03099 dCO2ase_PEP1: pyridoxal-dependent decarboxylase, exosortase A system-associated
     0.0019   14.5   0.0     0.0093   12.3   0.0    1.9  1  TIGR01047 nspC: carboxynorspermidine decarboxylase
  ------ inclusion threshold ------
      0.011   12.0   0.0      0.027   10.7   0.0    1.7  1  TIGR01273 speA: arginine decarboxylase


Domain annotation for each model (and alignments):
>> TIGR01048  lysA: diaminopimelate decarboxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  129.7   0.0   2.2e-41   2.2e-38      26     392 ..     239     611 ..     219     620 .. 0.84

  Alignments for each domain:
  == domain 1    score: 129.7 bits;  conditional E-value: 2.2e-41
   TIGR01048  26 PlYvydeetlrerlealkeafkaeeslvlYAvKAnsnlavlrllaeeGlgldvvsgGEleralaAgvkaekivfsgngkseeeleaaleleiklinvdsveelelleeiakelgkkarvllRvnpdvdaktheyisTGlkesKFGieveeaeeayelalkleslelvGihvHIGSqildlepfveaaekvvklleelkeegieleeldlGGGlgisyeeeeeapdleeyaeklleklekeaelglklklilEpGRslvanagvlltrVesvKeves.....rkfvlvDagmndliRpalYe.ayheiaalkr................leeeetetvdvvGplCEsgDvlakdrelpeveeGdllavasaGAYgasmssnYnsrprpae 392
                 P++++d  +  +r++  ++   +     +YAvK n  la+l+l+a++G+ +d+ s  E++++ + gv++e++v++  +k+ + l+ a e +++l + ds++el +  +  ++     ++llR+   vd +  +       ++K+G  +++a++   +a++++ +++ G+ +H+GS+      fv+a+ + ++++e  +++g+ +  ld+GGG+  s ++e      +++a+++  +l  +   ++k++ i+EpGR+l+a++ +l +++   K++       ++   v  g+      ++Y+ a+ e  +l +                  + + e +++ Gp C+  D ++k ++lp+ e G  l   + GAY+ +  s++n +p+p +
  MMETSP1137-20121227|2440_1 239 PFFMIDLGAAYARVALWRAHLPR--VEPFYAVKCNPDLALLSLFASLGVNFDCASRAEMQAVFSVGVEPERVVYANPCKQPSHLRFAKENGVQLSVFDSEAELVKTAAAHPS----CELLLRIK--VDDSKAQC----VMSDKYGAPLSQAAS-LLAAAAKHDVRVRGVSFHVGSGCYSPTAFVDAITRAAHVFEMAADRGTPMDILDIGGGFPGSDTPEL---AFSDIAAAIRPALDAHFPESRKVRFIAEPGRFLAAKTHTLAVNIIGKKTAVDangkrHTMYYVNDGLYGSFNNVVYDhAVPEFKVLPEvgtgdtcngsdgtcrtAAKPPLESCSIWGPTCDGFDCIVKSTRLPDLEVGRWLYFPEMGAYTSAAGSTFNGMPQPDK 611
                 55555555555555555555543..3689****************************************************************999******9988555555....5*****96..55555554....4679*******6555.556666777**********************************99*************987766665...999************999999**********************999997654566433344688888888888999626666666655888999999999987555667799*************************************************9876 PP

>> TIGR03099  dCO2ase_PEP1: pyridoxal-dependent decarboxylase, exosortase A system-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  101.8   0.0   9.1e-33   9.4e-30      16     306 ..     229     512 ..     217     518 .. 0.86
   2 !   11.5   0.0   2.4e-05     0.025     339     392 ..     556     608 ..     547     612 .. 0.88

  Alignments for each domain:
  == domain 1    score: 101.8 bits;  conditional E-value: 9.1e-33
   TIGR03099  16 telaarvgttPfyaydrklikervaalrkalpeelalhyalkanPmaaLlahlaelvdGlDvasagelklaldtGvdpekisfaGPGktdaeleaaiaagvllnv.eslrelarvaalaeklglrarvavrvnPdfelkssglkmgGgakqfGiDaeqvpevlakikaadldfkGlhifaGsqaLkaeaiieaqaktlalalelakeapapvrvlniGGGfGvpyfegeeeldlakvadalaalleklkealpevelileLGryLvaeaGiyvckvvdrkvs......rgekflvtdG 306
                 t+ +++ ++ Pf++ d  +  +rva  r++lp+ ++  ya+k nP  aLl+ +a+l   +D as  e++++  +Gv+pe++ +a P k+ + l+ a + gv l+v +s++el + aa+        ++++r+  d     +   m   + ++G    q +++la+ +++d+  +G+  + Gs + +  a ++a +++ + + e+a + ++p++ l iGGGf  +   +  el+ +++a+a++  l++   + ++v++i e Gr+L a++    ++++ +k++      r ++++v dG
  MMETSP1137-20121227|2440_1 229 TKHVRNGAEEPFFMIDLGAAYARVALWRAHLPR-VEPFYAVKCNPDLALLSLFASLGVNFDCASRAEMQAVFSVGVEPERVVYANPCKQPSHLRFAKENGVQLSVfDSEAELVKTAAAHP----SCELLLRIKVDDSK--AQCVM---SDKYGAPLSQAASLLAAAAKHDVRVRGVSFHVGSGCYSPTAFVDAITRAAH-VFEMAADRGTPMDILDIGGGFPGS---DTPELAFSDIAAAIRPALDAHFPESRKVRFIAEPGRFLAAKTHTLAVNIIGKKTAvdangkRHTMYYVNDG 512
                 4445555678**********************5.899****************************************************************8887478888866554433....45677777655433..33334...4689******************************************99976.578999***************755...5678***************************************9999999999863333335567888887 PP

  == domain 2    score: 11.5 bits;  conditional E-value: 2.4e-05
   TIGR03099 339 reevsivGpLCtPLDlladkvelpkaeaGDlvvifqsGayGasasPkafLgqpe 392
                  e++si Gp C  +D +++  +lp  e+G  + + + Gay  sa+ ++f g p+
  MMETSP1137-20121227|2440_1 556 LESCSIWGPTCDGFDCIVKSTRLPDLEVGRWLYFPEMGAYT-SAAGSTFNGMPQ 608
                 689*************************************6.677778877766 PP

>> TIGR01047  nspC: carboxynorspermidine decarboxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.3   0.0     9e-06    0.0093     193     357 ..     429     612 ..     328     625 .. 0.67

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 9e-06
   TIGR01047 193 leWvnlGGGhlltke.g...ydveklia..vikefkeryavqvilePGeaigwqtgflvasvvd....ivenekeiai......ldvsveahmpd..tlempyrpevleasvkadee.leeveekegefsyllggstClaGdvlgeyafdkplkvGdklvfedmihytivktttfnGvklPsla 357
                 ++ +++GGG     + +    d+  +i+  +  +f e  +v+ i ePG  ++ +t +l + ++     +  n k++ +      l  s++    d  + e++  pev      + ++ + +   k    s  + g+tC   d + + +   +l+vG  l f +m  yt    +tfnG++ P+  
  MMETSP1137-20121227|2440_1 429 MDILDIGGGFPGSDTpElafSDIAAAIRpaLDAHFPESRKVRFIAEPGRFLAAKTHTLAVNIIGkktaVDANGKRHTMyyvndgLYGSFNNVVYDhaVPEFKVLPEVGTGDTCNGSDgTCRTAAKPPLESCSIWGPTCDGFDCIVKSTRLPDLEVGRWLYFPEMGAYTSAAGSTFNGMPQPDKH 612
                 66677777654332112111355555542123468888899999999999999999988877632221444567777633222223466665655223466667777665555444414445566777788999************99999******************************855 PP

>> TIGR01273  speA: arginine decarboxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   2.7e-05     0.027     234     285 ..     387     438 ..     263     506 .. 0.83

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 2.7e-05
   TIGR01273 234 lldslkllHfHlGsqianiddvkkgvrEaarlyvelrklGvkievvdvGGGL 285
                  + +++ + fH+Gs   + +   ++++ aa+++      G +++++d+GGG 
  MMETSP1137-20121227|2440_1 387 HDVRVRGVSFHVGSGCYSPTAFVDAITRAAHVFEMAADRGTPMDILDIGGGF 438
                 233577899************************99999*************6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (653 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       236  (0.0575329); expected 82.0 (0.02)
Passed bias filter:                      116  (0.0282789); expected 82.0 (0.02)
Passed Vit filter:                        22  (0.00536324); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.58u 0.17s 00:00:00.75 Elapsed: 00:00:00.85
# Mc/sec: 1013.99
//
Query:       MMETSP1137-20121227|2441_1  [L=436]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (436 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        52  (0.0126767); expected 82.0 (0.02)
Passed bias filter:                       38  (0.00926377); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.18s 00:00:00.45 Elapsed: 00:00:00.36
# Mc/sec: 1598.53
//
Query:       MMETSP1137-20121227|2442_1  [L=290]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (290 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       173  (0.0421745); expected 82.0 (0.02)
Passed bias filter:                      113  (0.0275475); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.18s 00:00:00.44 Elapsed: 00:00:00.40
# Mc/sec: 956.92
//
Query:       MMETSP1137-20121227|2446_1  [L=241]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (241 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       100  (0.0243784); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.18s 00:00:00.39 Elapsed: 00:00:00.28
# Mc/sec: 1136.05
//
Query:       MMETSP1137-20121227|2447_1  [L=120]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (120 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        61  (0.0148708); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.14s 00:00:00.30 Elapsed: 00:00:00.28
# Mc/sec: 546.16
//
Query:       MMETSP1137-20121227|2448_1  [L=268]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.8e-30  104.2   0.0    2.2e-30  104.0   0.0    1.1  1  TIGR01830 3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase
    4.1e-21   73.3   2.8    5.2e-21   73.0   1.9    1.1  1  TIGR03206 benzo_BadH: 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase
    3.3e-20   70.6   0.0    6.6e-20   69.6   0.0    1.4  1  TIGR01829 AcAcCoA_reduct: acetoacetyl-CoA reductase
    1.3e-19   68.3   0.2    5.5e-19   66.2   0.2    1.8  1  TIGR01963 PHB_DH: 3-hydroxybutyrate dehydrogenase
    6.1e-19   66.3   0.2    1.5e-18   65.0   0.1    1.5  1  TIGR02415 23BDH: acetoin reductases
    1.1e-17   62.0   0.5      2e-17   61.2   0.3    1.4  1  TIGR01831 fabG_rel: putative 3-oxoacyl-(acyl-carrier-protein) reductase
    2.1e-17   61.3   0.1    4.2e-17   60.3   0.0    1.5  2  TIGR03971 SDR_subfam_1: oxidoreductase, SDR family
    1.5e-16   58.5   0.0    2.1e-16   58.0   0.0    1.1  1  TIGR01832 kduD: 2-deoxy-D-gluconate 3-dehydrogenase
    5.3e-16   56.5   1.8    2.1e-13   47.9   0.2    2.2  2  TIGR03325 BphB_TodD: cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase
    7.4e-13   46.0   0.4    2.1e-10   38.0   0.1    2.1  2  TIGR02685 pter_reduc_Leis: pteridine reductase
    1.3e-11   41.5   0.6    2.9e-11   40.3   0.4    1.5  1  TIGR02632 RhaD_aldol-ADH: rhamnulose-1-phosphate aldolase/alcohol dehydrogenase
      2e-05   22.0   1.1     0.0024   15.1   0.0    2.1  2  TIGR01500 sepiapter_red: sepiapterin reductase
    0.00032   17.9   0.0    0.00046   17.4   0.0    1.2  1  TIGR04058 AcACP_reductase: long-chain fatty acyl-ACP reductase (aldehyde-forming)
     0.0017   15.1   0.1     0.0027   14.5   0.0    1.3  1  TIGR03466 HpnA: hopanoid-associated sugar epimerase
  ------ inclusion threshold ------
      0.023   11.3   0.0       0.03   11.0   0.0    1.2  1  TIGR02823 oxido_YhdH: putative quinone oxidoreductase, YhdH/YhfP family
      0.033   11.6   0.0      0.058   10.8   0.0    1.4  1  TIGR01777 yfcH: TIGR01777 family protein
      0.043   10.9   0.0      0.067   10.2   0.0    1.3  1  TIGR01746 Thioester-redct: thioester reductase domain


Domain annotation for each model (and alignments):
>> TIGR01830  3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  104.0   0.0   9.1e-33   2.2e-30       2     237 ..      34     262 ..      33     264 .. 0.91

  Alignments for each domain:
  == domain 1    score: 104.0 bits;  conditional E-value: 9.1e-33
   TIGR01830   2 lvtGasrgiGkaiakklakegakvviterskeekaeelaeelkeagvkaaavkldvsdeeevkelveeveeelgeidilvnnAGitrDklllrmkeedwdevikvnLkgvfnvtkavlkkmikkrsGriinissvvgllGnagqanYaasKaGligltkslakElasrnitvnavaPGfie.tdmtekl..sekvkkkileqiplkrlgkpeevaaavafLasdeasyitGqvlkvdGG 237
                 lv Ga+ +iG+a+a+++ ++g ++v+  r +e+++++l++el +    a+  ++d s+ e+v + + ++ e+l+     v +  ++r   +   +  d+++  ++n+ ++ +  ka +  + k  +G+ +  ssv++  G a  a  aasK+ + glt sla Ela  +i+vn+vaP + e + m + l  +ek+ +++++  p+ rlg+pe+ aaa+ fL s ++++itGqvl  dGG
  MMETSP1137-20121227|2448_1  34 LVCGATGAIGAALARRIFSRGGTLVLAGR-SESSLQSLSKELGN----ATYRVTDFSKPESVAASLGDLPEDLQGFAYAVGSITLKR---ITAARPADYESSFALNVISASEAFKASMPGLKK-NKGSAVFFSSVAASKGFASHAVVAASKGAIQGLTVSLAAELAP-AIRVNCVAPSLTEgSAMSAPLlsNEKMASQMAAGHPMARLGSPEDSAAAADFLLSPDSTWITGQVLGCDGG 262
                 89************************965.67778999988877....578899***********************9998766555...6677899*****************999887755.789**************************************97.7**********985789998866789999*****************************************9 PP

>> TIGR03206  benzo_BadH: 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.0   1.9   2.2e-23   5.2e-21       5     247 ..      32     262 ..      28     265 .. 0.89

  Alignments for each domain:
  == domain 1    score: 73.0 bits;  conditional E-value: 2.2e-23
   TIGR03206   5 vaivtgggggiggaicrrfaeegakvavldlnaeaaekvaaairekggkaeavavditdrasvdaavaaaeealgpvdvlvnnagwdvlkpflktekaewerliainltgalymhhavlkgmverkagrivniasdaarvgssgeavyaackgglvafsktlarelarhgitvnvvcpgptdtalledvkseaekpeklieaftraiplgrlgkpddlagailflasddaafitgqvlsvsgg 247
                  ++v g +g ig+a+ rr+   g  + +       +e   +++ ++ g+a    +d+++ +sv a++    e l          g   lk ++ + +a++e   a+n+  a    +a ++g+ ++++g  v  +s aa  g +  av aa kg +  ++ +la ela   i vn v p  t+ + +         +ek+   ++   p+ rlg p+d a a  fl s d+++itgqvl   gg
  MMETSP1137-20121227|2448_1  32 STLVCGATGAIGAALARRIFSRGGTLVLAG----RSESSLQSLSKELGNATYRVTDFSKPESVAASLGDLPEDLQGFAY---AVGSITLKRITAARPADYESSFALNVISASEAFKASMPGL-KKNKGSAVFFSSVAASKGFASHAVVAASKGAIQGLTVSLAAELAP-AIRVNCVAPSLTEGSAMSA---PLLSNEKMASQMAAGHPMARLGSPEDSAAAADFLLSPDSTWITGQVLGCDGG 262
                 57899*************888887765544....44555667778889999999*************999999987655...557788999******************************8.6788***************************************96.7***********9987654...445678999999999**********************************999 PP

>> TIGR01829  AcAcCoA_reduct: acetoacetyl-CoA reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.6   0.0   2.8e-22   6.6e-20       4     240 ..      34     263 ..      32     265 .. 0.84

  Alignments for each domain:
  == domain 1    score: 69.6 bits;  conditional E-value: 2.8e-22
   TIGR01829   4 lvtGglgGiGtaickrlakdGykvvanvapneerakewlqekevegfdvavvkadvssfeeakaavakveaelGpvdvlvnnaGitrdavfkkmtkeqWeevidtnlnsvfnvtrpviegmlergfGriinissvnGlkGqfGqanysaakaGliGftkalaqegakkgvtvnviaPGyiatemvka.v..redvlkkivaqiPvkrlgkpeeiaaavaflaseeagyvtGatlsvnGGl 240
                 lv G++g iG+a+++r+ + G ++v + +++++  +++ +e +      +   +d s+ e+ +a + ++ ++l      v +  + r         +++e   + n+ s  +  +  + g++ ++ G  +  ssv   kG +  a  +a+k  + G+t +la+e a  ++ vn +aP  ++   ++a +  +e++ +++ a+ P+ rlg pe+ aaa  fl s +++++tG+ l  +GG+
  MMETSP1137-20121227|2448_1  34 LVCGATGAIGAALARRIFSRGGTLVLAGRSESS-LQSLSKELGNA----TYRVTDFSKPESVAASLGDLPEDLQGFAYAVGSITLKRI---TAARPADYESSFALNVISASEAFKASMPGLK-KNKGSAVFFSSVAASKGFASHAVVAASKGAIQGLTVSLAAELAP-AIRVNCVAPSLTEGSAMSApLlsNEKMASQMAAGHPMARLGSPEDSAAAADFLLSPDSTWITGQVLGCDGGR 263
                 89***************9998887766554443.34444444433....34457999***************9999888877666554...4456788999999999999999999999975.66799************************************996.7**********9976555433337889999****************************************96 PP

>> TIGR01963  PHB_DH: 3-hydroxybutyrate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.2   0.2   2.3e-21   5.5e-19       3     251 ..      32     262 ..      30     265 .. 0.88

  Alignments for each domain:
  == domain 1    score: 66.2 bits;  conditional E-value: 2.3e-21
   TIGR01963   3 valvtGaasGiglaiakelaaaGakvvvndleeeaaeaaakeleeaggevlalkadvtkeeeiadlieavaaefgsldiLvnnAGiqhvapieefptekfekiiavnltsafhtiraalpimkkqgwGriiniasvhglvasafKsaYvaaKHglvGltKvlAlEvAetgitanaicPgyvrtpLvekqiadqaktrgiseeqvvkevllkkqptkrfvtveevaelalflasdaaaqitGqalsldgG 251
                 + lv Ga++ ig+a+a+++   G ++v+ + +e ++++++kel +    +++ ++d +k e++a ++  + +++ +    v      + + i    ++++e   a+n+ sa  + +a +p++kk+  G  +  +sv + +++a  +   a+K ++ Glt +lA E A   i++n+++P+  +   ++        +  +s+e++    + + +p  r+ ++e+ a++a fl s ++  itGq l  dgG
  MMETSP1137-20121227|2448_1  32 STLVCGATGAIGAALARRIFSRGGTLVLAGRSESSLQSLSKELGN----ATYRVTDFSKPESVAASLGDLPEDLQGFAYAVGSI---TLKRITAARPADYESSFALNVISASEAFKASMPGLKKN-KGSAVFFSSVAASKGFASHAVVAASKGAIQGLTVSLAAELAP-AIRVNCVAPSLTEGSAMS--------APLLSNEKMA-SQMAAGHPMARLGSPEDSAAAADFLLSPDSTWITGQVLGCDGG 262
                 579****************************99999988887765....56667899*************99999998887655...5567777899*************************986.599**************************************8.5********976654433........3445555554.558999************************************9 PP

>> TIGR02415  23BDH: acetoin reductases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.0   0.1   6.2e-21   1.5e-18       3     250 ..      33     262 ..      31     264 .. 0.86

  Alignments for each domain:
  == domain 1    score: 65.0 bits;  conditional E-value: 6.2e-21
   TIGR02415   3 alvtGaaqGiGkaiaerLakdGfavavadlneetaketakelkekgtkavavkldvsdkseveeaveqaveklGeldvlvnnaGvalvtpileiteeeleklynvnvkgvlfGiqaaaekfkklkhkGkiinaasiagvegspelsaysstkfavrgltqtaakeLakkgitvnayaPGivkte.mreeideklaelagkeigekleefsseiklGresePedvaelvsflasedsdyitGqsilvdGG 250
                  lv Ga+  iG a+a+r+   G  +++a   e +++   kel    ++a + ++d s+ ++v + + +  e+l +++  v        + i+   + + e  +++nv +     +a++  +kk  +kG  +  +s+a+ +g++  ++ +++k a++glt + a eLa+  i vn+ aP + + + m + + +          ++  ++++    + r  +Ped a+   fl s ds +itGq++  dGG
  MMETSP1137-20121227|2448_1  33 TLVCGATGAIGAALARRIFSRGGTLVLAGRSESSLQSLSKEL----GNATYRVTDFSKPESVAASLGDLPEDLQGFAYAVGSIT---LKRITAARPADYESSFALNVISASEAFKASMPGLKK--NKGSAVFFSSVAASKGFASHAVVAASKGAIQGLTVSLAAELAP-AIRVNCVAPSLTEGSaMSAPLLS---------NEKMASQMAAGHPMARLGSPEDSAAAADFLLSPDSTWITGQVLGCDGG 262
                 699*************************99998887777776....56777889**********************99986655...56666778888999***************9999986..68999*************************************8.599******99876514433332.........233334444455567899*****************************9 PP

>> TIGR01831  fabG_rel: putative 3-oxoacyl-(acyl-carrier-protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.2   0.3   8.3e-20     2e-17       2     237 ..      34     262 ..      33     264 .. 0.75

  Alignments for each domain:
  == domain 1    score: 61.2 bits;  conditional E-value: 8.3e-20
   TIGR01831   2 lvtgasrgigraialklaadgfeiavhyrsdradaeesvaairaqggnarllkfdvadrvavrevleadiae.hgayygvvlnagiardaafpalseedwdavietnldgfynvihplvmpmirarkggriitlasvsgvmgnrgqvnysaakagligatkalavelakrkitvnciapglidtemvae...vekdlkealkl.vpmkrvgkaeevaalaaflmsddaayvtrqvisvngg 237
                 lv ga+  ig a+a ++ + g  + +  rs+      s++++  + gna     d ++ ++v + l    ++ +g  y v + +     aa pa  e  +   + ++ ++f        mp ++  kg   + ++sv+   g       +a+k  + g t +la ela   i vnc+ap l +   ++     ++++  ++    pm r+g +e+ aa a fl+s d++++t qv++ +gg
  MMETSP1137-20121227|2448_1  34 LVCGATGAIGAALARRIFSRGGTLVLAGRSES-----SLQSLSKELGNATYRVTDFSKPESVAASLGDLPEDlQGFAYAVGSITLKRITAARPADYESSFALNVISASEAFK-----ASMPGLKKNKGS-AVFFSSVAASKGFASHAVVAASKGAIQGLTVSLAAELAP-AIRVNCVAPSLTEGSAMSApllSNEKMASQMAAgHPMARLGSPEDSAAAADFLLSPDSTWITGQVLGCDGG 262
                 899******************99999877654.....444555555555444445555555555554433331566666655554444677787666666655555555554.....579*99988876.5789*********************************97.6***********98755432223455777776438***********************************9 PP

>> TIGR03971  SDR_subfam_1: oxidoreductase, SDR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0       1.9   4.6e+02     178     191 ..      68      81 ..      26      98 .. 0.59
   2 !   60.3   0.0   1.8e-19   4.2e-17     109     263 ..     116     262 ..     101     264 .. 0.89

  Alignments for each domain:
  == domain 1    score: -2.1 bits;  conditional E-value: 1.9
   TIGR03971 178 ktlanelaeygirv 191
                 ++l++el++   rv
  MMETSP1137-20121227|2448_1  68 QSLSKELGNATYRV 81 
                 34555555555555 PP

  == domain 2    score: 60.3 bits;  conditional E-value: 1.8e-19
   TIGR03971 109 afelseeqWdtvldvnlkGvWktvkavvPalierknGGsiiivssvaglkalpglahyaaakhGlvgltktlanelaeygirvnsihPtsvdtamiepeamrelfakreeaaraflpalpvsglvepedvadvvawlasdesryitGaqlavdaG 263
                 +   ++ +++    +n+  + ++ ka +P l  +k  Gs +  ssva+ k++   a  aa+k  + glt +la ela+  irvn + P      ++e  am   ++ +e++a +  + +p+  l +ped a+++ +l s++s  itG+ l  d G
  MMETSP1137-20121227|2448_1 116 ITAARPADYESSFALNVISASEAFKASMPGLKKNK--GSAVFFSSVAASKGFASHAVVAASKGAIQGLTVSLAAELAP-AIRVNCVAPS-----LTEGSAMSAPLLSNEKMASQMAAGHPMARLGSPEDSAAAADFLLSPDSTWITGQVLGCDGG 262
                 55556667777888899999999*******96555..9***************************************9.6*****9996.....6677888899999********************************************9998 PP

>> TIGR01832  kduD: 2-deoxy-D-gluconate 3-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.0   0.0   8.5e-19   2.1e-16       4     244 ..      29     262 ..      27     265 .. 0.86

  Alignments for each domain:
  == domain 1    score: 58.0 bits;  conditional E-value: 8.5e-19
   TIGR01832   4 eGkvalvtGantGlGqgiavglaeaGadivgvgiselsetqekvealGrkflslkadladeeaakalvdeaveeagkidilvnnaGiirredavefsekdwddvlnvnlkavfllsqavakkllkqGrkgkiiniasllsfqGGirvpsytasksavaGltkllanewakkginvnaiaPGyletnn.tealradekrnaaileriPagrwGepedlagaavflassasdyvnGailavdGG 244
                 +G  +lv Ga   +G ++a  + + G+ +v +g+se s  q+  ++lG+  + +  d++++e+++   ++  +  + +  +    G i  +   +   +d++  + +n+ +     +a +   lk+  kg  +  +s+ + +G    +  +ask a+ Glt +la+e+a  +i+vn +aP   e    ++ l ++ek + ++ +  P +r G+ped a aa fl s  s +++G++l  dGG
  MMETSP1137-20121227|2448_1  29 NGMSTLVCGATGAIGAALARRIFSRGGTLVLAGRSESS-LQSLSKELGNATYRV-TDFSKPESVA---ASLGDLPEDLQGFAYAVGSITLKRITAARPADYESSFALNVISASEAFKA-SMPGLKKN-KGSAVFFSSVAASKGFASHAVVAASKGAIQGLTVSLAAELAP-AIRVNCVAPSLTEGSAmSAPLLSNEKMASQMAAGHPMARLGSPEDSAAAADFLLSPDSTWITGQVLGCDGG 262
                 68899****************************99865.556666777776666.69*9999998...5556666677888888899998999999999****999997765444433.33346665.899999**********************************86.7**********997651677999***********************************************9 PP

>> TIGR03325  BphB_TodD: cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.9   0.0    0.0015      0.35       5      53 ..      30      78 ..      26      91 .. 0.88
   2 !   47.9   0.2   8.8e-16   2.1e-13     107     254 ..     123     262 ..     101     266 .. 0.84

  Alignments for each domain:
  == domain 1    score: 7.9 bits;  conditional E-value: 0.0015
   TIGR03325  5 devvlvtggasglgralvdrfvaegarvavldksaagleeleaahgdkv 53
                +  +lv g +  +g al  r  + g  + +  +s+  l+ l ++ g++ 
  MMETSP1137-20121227|2448_1 30 GMSTLVCGATGAIGAALARRIFSRGGTLVLAGRSESSLQSLSKELGNAT 78
                556799999999*****************************99988876 PP

  == domain 2    score: 47.9 bits;  conditional E-value: 8.8e-16
   TIGR03325 107 afdevfeinvkgyllavkaalpalvasrgsviftvsnagfypngggalytaakhavvglvkelayelapyvrvngvapgglstdlrglksldladksissvplgdllksvlpigrmadaeeytgayvffatrgdtvpltgavlnydgg 254
                  ++  f +nv +   a ka++p l + +gs++f  s a        a+ +a+k a+ gl   la elap +rvn vap              ++   +s+  ++  +    p+ r+ + e+++ a  f+    d+  +tg vl  dgg
  MMETSP1137-20121227|2448_1 123 DYESSFALNVISASEAFKASMPGLKKNKGSAVFFSSVAASKGFASHAVVAASKGAIQGLTVSLAAELAPAIRVNCVAPSLTE-------GSAMSAPLLSNEKMASQMAAGHPMARLGSPEDSAAAADFLL-SPDSTWITGQVLGCDGG 262
                 58889********************************999999999********************************7433.......22355555666666666777789999999999998887776.56788899*****9999 PP

>> TIGR02685  pter_reduc_Leis: pteridine reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.3   0.0    0.0039      0.94       4      48 ..      33      76 ..      31     101 .. 0.87
   2 !   38.0   0.1   8.7e-13   2.1e-10     153     263 ..     151     264 ..     127     268 .] 0.77

  Alignments for each domain:
  == domain 1    score: 6.3 bits;  conditional E-value: 0.0039
   TIGR02685  4 alvtGaakriGrsiavklhqeGyrvvlhyrrsaeaasslaaelna 48
                +lv Ga+  iG ++a ++ ++G ++vl   rs+++ +sl++el +
  MMETSP1137-20121227|2448_1 33 TLVCGATGAIGAALARRIFSRGGTLVLA-GRSESSLQSLSKELGN 76
                689*********************9997.5799999999999965 PP

  == domain 2    score: 38.0 bits;  conditional E-value: 8.7e-13
   TIGR02685 153 lsivnlvdamtdqpllgfslytmakealeGltrsaalelaslqirvngvapGlsllp.dampeevkeeyrrkvplgq...reasaeqiadvviflvskkakyitGtiikvdGGls 263
                  s v +    +++   ++++ + +k a++Glt s a ela+  irvn+vap l+     + p   +e+   ++  g+   r  s e+ a +  fl+s+++ +itG ++  dGG s
  MMETSP1137-20121227|2448_1 151 GSAVFFSSVAASKGFASHAVVAASKGAIQGLTVSLAAELAP-AIRVNCVAPSLTEGSaMSAPLLSNEKMASQMAAGHpmaRLGSPEDSAAAADFLLSPDSTWITGQVLGCDGGRS 264
                 566666677778888999999*******************9.5********9964320233445555555555544311156789999999**********************76 PP

>> TIGR02632  RhaD_aldol-ADH: rhamnulose-1-phosphate aldolase/alcohol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.3   0.4   1.2e-13   2.9e-11     417     670 ..      33     263 ..      20     267 .. 0.83

  Alignments for each domain:
  == domain 1    score: 40.3 bits;  conditional E-value: 1.2e-13
   TIGR02632 417 alvtGgasGiGrevarrlvdeGahvvladldaeaaeavaaelvdkfGadkavalkldvtdeeavkaafaevalayGGvdivvnnaGiavskpleeteleeWdlnldilatGyflvareaarllr..kqglggnlvfiasknavvakknalaysaakaaeahlvrllaielaelgirvntvaPdavlrGsgifagewrekraaaygieadkleefykkrsllkrevlpediaeavfllasdklekttGliitvdaGv 670
                  lv G+++ iG ++arr+ ++G  +vla   + ++++  +el       +a   + d  + e+v+a++ +   +  G    v   G  + k + +    +++ ++++++      a ea++      ++  g+ vf +s+ a     +    +a+k a + l   la+ela++ irvn vaP  + +Gs++ a    ++++a+   +             + r   ped a a  +l+s +++  tG+++  d+G 
  MMETSP1137-20121227|2448_1  33 TLVCGATGAIGAALARRIFSRGGTLVLAGRSESSLQSLSKELG------NATYRVTDFSKPESVAASLGDLPEDLQGFAYAV---GSITLKRITAARPADYESSFALNVI----SASEAFKASMpgLKKNKGSAVFFSSVAASKGFASHAVVAASKGAIQGLTVSLAAELAPA-IRVNCVAPS-LTEGSAMSAPLLSNEKMASQMAAGHP----------MARLGSPEDSAAAADFLLSPDSTWITGQVLGCDGGR 263
                 689***************************9999999999997......4555678******************99986655...6667788888888999999999875....56777765431145667999***999988777777788899*****************9.********6.789***98887777766665444333..........3344579***************************96 PP

>> TIGR01500  sepiapter_red: sepiapterin reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0     1e-05    0.0024       3      51 ..      33      77 ..      31     103 .. 0.84
   2 !    5.9   0.1    0.0066       1.6     130     193 ..     136     200 ..     117     210 .. 0.74

  Alignments for each domain:
  == domain 1    score: 15.1 bits;  conditional E-value: 1e-05
   TIGR01500  3 llvtGasrGfGrelaqelakrlkaegsvlvLlaRndeaLkeskaeieae 51
                +lv Ga   +G +la+++ +    +g +lvL +R++ +L+++ +e++  
  MMETSP1137-20121227|2448_1 33 TLVCGATGAIGAALARRIFS----RGGTLVLAGRSESSLQSLSKELGNA 77
                58999999999998887776....8********************9952 PP

  == domain 2    score: 5.9 bits;  conditional E-value: 0.0066
   TIGR01500 130 sellkk.lkelqglektvvnlssLcaikpfkswalYCaskaaRdmffqvLaleekedvkvLnYap 193
                 se +k+ ++ l+  +   v  ss++a k f s a   ask a + +   La e  + ++v   ap
  MMETSP1137-20121227|2448_1 136 SEAFKAsMPGLKKNKGSAVFFSSVAASKGFASHAVVAASKGAIQGLTVSLAAELAPAIRVNCVAP 200
                 333332133334444567999***********************99999***9999999866665 PP

>> TIGR04058  AcACP_reductase: long-chain fatty acyl-ACP reductase (aldehyde-forming)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.0   1.9e-06   0.00046     158     205 ..      33      78 ..      20      92 .. 0.86

  Alignments for each domain:
  == domain 1    score: 17.4 bits;  conditional E-value: 1.9e-06
   TIGR04058 158 vavvGatGdiGsavcrwleaktdvkelllvarekerleelqeelgrGk 205
                   v+GatG iG+a++r + ++ +   l+l  r+++ l++l +elg+ +
  MMETSP1137-20121227|2448_1  33 TLVCGATGAIGAALARRIFSRGG--TLVLAGRSESSLQSLSKELGNAT 78 
                 569***************99876..699****************9875 PP

>> TIGR03466  HpnA: hopanoid-associated sugar epimerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.0   1.1e-05    0.0027       1      42 [.      31      72 ..      31      96 .. 0.80

  Alignments for each domain:
  == domain 1    score: 14.5 bits;  conditional E-value: 1.1e-05
   TIGR03466  1 kkvlvtGatGFvGsavvrllleeGeevrvlvrktsdrrnlee 42
                + +lv GatG +G+a++r + ++G ++ +  r++s+ + l++
  MMETSP1137-20121227|2448_1 31 MSTLVCGATGAIGAALARRIFSRGGTLVLAGRSESSLQSLSK 72
                578***********************9999999999877653 PP

>> TIGR02823  oxido_YhdH: putative quinone oxidoreductase, YhdH/YhfP family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00012      0.03     140     196 ..      23      81 ..       7     144 .. 0.68

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 0.00012
   TIGR02823 140 agltpeeg.evlVtGAtGgVgs.lavalLsklGyevvavtgkkeeeeylkelGakevis 196
                 + ++  +g + lV GAtG++g+ la +++s+ G  v+a  + ++ + + kelG +    
  MMETSP1137-20121227|2448_1  23 RPIRRTNGmSTLVCGATGAIGAaLARRIFSRGGTLVLAGRSESSLQSLSKELGNATYRV 81 
                 554444442689********9548**************999999999******765433 PP

>> TIGR01777  yfcH: TIGR01777 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00024     0.058       2      44 ..      34      76 ..      33      94 .. 0.79

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 0.00024
   TIGR01777  2 litGgtGliGralveelekkghevviltrskekekeekkesak 44
                l+ G+tG iG al++++ ++g ++v+  rs+++ ++ +ke  +
  MMETSP1137-20121227|2448_1 34 LVCGATGAIGAALARRIFSRGGTLVLAGRSESSLQSLSKELGN 76
                799***************************9976666655554 PP

>> TIGR01746  Thioester-redct: thioester reductase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   0.00028     0.067       2      77 ..      33     104 ..      32     111 .. 0.87

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 0.00028
   TIGR01746   2 vlLTGAtGfLGaylleeLlrrsteakviClVRakseehaleRLrealrsyrleeeklaa.erievvaGdlseprlGL 77 
                 +l+ GAtG +Ga l++ +  r       +lV a   e+ l+ L + l ++  + ++ ++ e + +  Gdl e   G+
  MMETSP1137-20121227|2448_1  33 TLVCGATGAIGAALARRIFSRG-----GTLVLAGRSESSLQSLSKELGNATYRVTDFSKpESVAASLGDLPEDLQGF 104
                 799******************8.....589999999999*******997777766666779********99888777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (268 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       169  (0.0411994); expected 82.0 (0.02)
Passed bias filter:                      147  (0.0358362); expected 82.0 (0.02)
Passed Vit filter:                        30  (0.00731351); expected 4.1 (0.001)
Passed Fwd filter:                        17  (0.00414432); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              17  [number of targets reported over threshold]
# CPU time: 0.39u 0.18s 00:00:00.57 Elapsed: 00:00:00.54
# Mc/sec: 655.06
//
Query:       MMETSP1137-20121227|2449_1  [L=359]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (359 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        63  (0.0153584); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.17s 00:00:00.46 Elapsed: 00:00:00.50
# Mc/sec: 947.68
//
Query:       MMETSP1137-20121227|2450_1  [L=57]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        54  (0.0131643); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.15s 00:00:00.26 Elapsed: 00:00:00.26
# Mc/sec: 289.36
//
Query:       MMETSP1137-20121227|2451_1  [L=785]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (785 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       115  (0.0280351); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.49u 0.16s 00:00:00.65 Elapsed: 00:00:00.47
# Mc/sec: 2204.50
//
Query:       MMETSP1137-20121227|2452_1  [L=206]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.7e-15   55.1   0.2    1.8e-15   55.0   0.1    1.1  1  TIGR02349 DnaJ_bact: chaperone protein DnaJ
    8.5e-11   38.8   0.0    1.1e-10   38.5   0.0    1.0  1  TIGR03835 termin_org_DnaJ: terminal organelle assembly protein TopJ


Domain annotation for each model (and alignments):
>> TIGR02349  DnaJ_bact: chaperone protein DnaJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.0   0.1   8.7e-19   1.8e-15       3      65 ..      78     139 ..      76     204 .. 0.84

  Alignments for each domain:
  == domain 1    score: 55.0 bits;  conditional E-value: 8.7e-19
   TIGR02349   3 YeiLgvskdAseeeikkAYrklakkyHPDrnkgekeaeekfkeineAyevLsdeekraqYDqf 65 
                 + ++g s +A++ e++ AYrk+a++ HPD n   ++a e f + ++A+evLsd+++raq++q 
  MMETSP1137-20121227|2452_1  78 WALIGCSDKATQPELQAAYRKKARELHPDLNG-APDARENFMRLTKAMEVLSDPKRRAQWEQQ 139
                 667899*************************9.***************************994 PP

>> TIGR03835  termin_org_DnaJ: terminal organelle assembly protein TopJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.5   0.0   5.2e-14   1.1e-10       2      64 ..      75     137 ..      74     140 .. 0.94

  Alignments for each domain:
  == domain 1    score: 38.5 bits;  conditional E-value: 5.2e-14
   TIGR03835   2 rDyyevLgidrDadeqeikkafrkLakkyhPDrnkaadaakifaeineandvLsnPkkraryD 64 
                  D +  +g +  a + e++ a+rk a+  hPD n a+da + f  +  a +vLs+Pk+ra+++
  MMETSP1137-20121227|2452_1  75 VDLWALIGCSDKATQPELQAAYRKKARELHPDLNGAPDARENFMRLTKAMEVLSDPKRRAQWE 137
                 577888999999************************************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (206 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       135  (0.0329108); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.22u 0.12s 00:00:00.34 Elapsed: 00:00:00.34
# Mc/sec: 799.70
//
Query:       MMETSP1137-20121227|2453_1  [L=634]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.6e-07   27.8   0.0    2.4e-06   24.6   0.0    2.0  2  TIGR03594 GTPase_EngA: ribosome-associated GTPase EngA
    4.2e-06   24.4   0.0    0.00047   17.7   0.0    2.2  2  TIGR03598 GTPase_YsxC: ribosome biogenesis GTP-binding protein YsxC
    3.9e-05   21.3   0.0    6.9e-05   20.5   0.0    1.4  1  TIGR00231 small_GTP: small GTP-binding protein domain


Domain annotation for each model (and alignments):
>> TIGR03594  GTPase_EngA: ribosome-associated GTPase EngA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.0     0.032        43     176     198 ..     102     124 ..      51     139 .. 0.72
   2 !   24.6   0.0   1.8e-09   2.4e-06      48     135 ..     190     280 ..     186     328 .. 0.78

  Alignments for each domain:
  == domain 1    score: 0.7 bits;  conditional E-value: 0.032
   TIGR03594 176 ikiaiiGrpNvGKStLvNallge 198
                   + ++G+  vGK +++ +llg+
  MMETSP1137-20121227|2453_1 102 PMVLLLGQYSVGKTSFIKYLLGR 124
                 45566677777777777776664 PP

  == domain 2    score: 24.6 bits;  conditional E-value: 1.8e-09
   TIGR03594  48 kefiliDTgGl..eeeedelekeireqaelaieeadvilfvvdare.glteeDeeiaklLrkskkpvilvvNKvdnkkeeaeaaefyslGl 135
                 k+++l+D +G+   +++++   e +  ++  ++++d il+++da +  l++e +e++klLr ++k+v +v+NK+d+ + +     + + G+
  MMETSP1137-20121227|2453_1 190 KRVMLVDSPGVlsGQKQRDRGYEFNGVIKWFVQHSDRILLLFDAYKlDLSDEFKEVMKLLRDHEKKVRVVLNKADGVSPQDLGRAVGAKGM 280
                 5789*******86555555788999******************97647888889*********************9977665554444444 PP

>> TIGR03598  GTPase_YsxC: ribosome biogenesis GTP-binding protein YsxC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.3   0.0    0.0044         6      11      43 ..      94     126 ..      86     129 .. 0.83
   2 !   17.7   0.0   3.5e-07   0.00047      64     148 ..     190     272 ..     150     292 .. 0.88

  Alignments for each domain:
  == domain 1    score: 4.3 bits;  conditional E-value: 0.0044
   TIGR03598  11 kqlpedklpeiafaGrSNvGKSsliNaLtnrkk 43 
                 ++   +++p + ++G+  vGK s+i  L++r+ 
  MMETSP1137-20121227|2453_1  94 SDAWFESKPMVLLLGQYSVGKTSFIKYLLGRRY 126
                 555667889999****************99986 PP

  == domain 2    score: 17.7 bits;  conditional E-value: 3.5e-07
   TIGR03598  64 eelrlvDlPGYGyakvskeekekwqklieeYLekrenLkgvvllvDi.rhelkelDlellellkeakipvlvvltKaDklkkselk 148
                 ++++lvD PG    + ++++  +++ +i+ ++++++   +++ll+D+ + +l+++ +e+++ll++++ +v vvl+KaD ++ ++l 
  MMETSP1137-20121227|2453_1 190 KRVMLVDSPGVLSGQKQRDRGYEFNGVIKWFVQHSD---RILLLFDAyKLDLSDEFKEVMKLLRDHEKKVRVVLNKADGVSPQDLG 272
                 6789****************************9997...57889996478999999**********************99988765 PP

>> TIGR00231  small_GTP: small GTP-binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   0.0   5.1e-08   6.9e-05       4     126 ..     102     267 ..      99     295 .. 0.82

  Alignments for each domain:
  == domain 1    score: 20.5 bits;  conditional E-value: 5.1e-08
   TIGR00231   4 ikivivGhvdvGKstLlnsllknkisiteskp.gvtrdyvteqieedGkt.......................................ykvnllDTaG..qedfdairrlyvrever.slevvdivilvldveeg.lekqtkeiiheakkkgvpiilvvnKiDlkd 126
                   ++++G+ +vGK++ +++ll++      ++p  +t+++v+  +  d ++                                       ++v l+D +G    +++++r + ++ v + +++  d ++l+ d+ +  l ++ ke+ + ++  ++++++v+nK D ++
  MMETSP1137-20121227|2453_1 102 PMVLLLGQYSVGKTSFIKYLLGRRYLGGRIGPeMTTDKFVAI-MYGDAEKttpgnaltsqpdtpfhslkkygtnflnrleatalpspilKRVMLVDSPGvlSGQKQRDRGYEFNGVIKwFVQHSDRILLLFDAYKLdLSDEFKEVMKLLRDHEKKVRVVLNKADGVS 267
                 5799***************************97888888884.44444447************************************************9955555667777888877345566666666666554144556889999998999**********887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (634 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       160  (0.0390054); expected 82.0 (0.02)
Passed bias filter:                      140  (0.0341297); expected 82.0 (0.02)
Passed Vit filter:                        23  (0.00560702); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.47u 0.12s 00:00:00.59 Elapsed: 00:00:00.59
# Mc/sec: 1418.32
//
Query:       MMETSP1137-20121227|2454_1  [L=686]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (686 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       140  (0.0341297); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.17s 00:00:00.61 Elapsed: 00:00:00.61
# Mc/sec: 1484.34
//
Query:       MMETSP1137-20121227|2455_1  [L=83]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (83 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        57  (0.0138957); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.12s 00:00:00.26 Elapsed: 00:00:00.70
# Mc/sec: 156.50
//
Query:       MMETSP1137-20121227|2456_1  [L=276]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (276 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        78  (0.0190151); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.14s 00:00:00.36 Elapsed: 00:00:00.35
# Mc/sec: 1040.83
//
Query:       MMETSP1137-20121227|2457_1  [L=163]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (163 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       174  (0.0424183); expected 82.0 (0.02)
Passed bias filter:                      132  (0.0321794); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.16s 00:00:00.32 Elapsed: 00:00:00.27
# Mc/sec: 796.82
//
Query:       MMETSP1137-20121227|2458_1  [L=378]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (378 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        43  (0.0104827); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.16s 00:00:00.43 Elapsed: 00:00:00.28
# Mc/sec: 1781.85
//
Query:       MMETSP1137-20121227|2459_1  [L=149]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (149 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       332  (0.0809361); expected 82.0 (0.02)
Passed bias filter:                      194  (0.047294); expected 82.0 (0.02)
Passed Vit filter:                        20  (0.00487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.17s 00:00:00.38 Elapsed: 00:00:00.70
# Mc/sec: 280.95
//
Query:       MMETSP1137-20121227|2460_1  [L=1018]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1018 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       723  (0.176255); expected 82.0 (0.02)
Passed bias filter:                      105  (0.0255973); expected 82.0 (0.02)
Passed Vit filter:                        44  (0.0107265); expected 4.1 (0.001)
Passed Fwd filter:                        11  (0.00268162); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 1.46u 0.21s 00:00:01.67 Elapsed: 00:00:01.24
# Mc/sec: 1083.59
//
Query:       MMETSP1137-20121227|2461_1  [L=152]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (152 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        83  (0.020234); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.17s 00:00:00.34 Elapsed: 00:00:00.35
# Mc/sec: 573.21
//
Query:       MMETSP1137-20121227|2462_1  [L=226]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      2e-36  123.4   0.0    2.4e-36  123.1   0.0    1.1  1  TIGR01993 Pyr-5-nucltdase: pyrimidine 5'-nucleotidase
    2.6e-10   38.5   0.0    5.4e-09   34.2   0.0    2.7  3  TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3
    1.8e-05   22.5   0.0    4.7e-05   21.1   0.0    1.7  1  TIGR02253 CTE7: HAD hydrolase, TIGR02253 family
    2.5e-05   21.9   0.0    5.8e-05   20.8   0.0    1.6  1  TIGR02247 HAD-1A3-hyp: epoxide hydrolase N-terminal domain-like phosphatase
     0.0059   14.0   0.0     0.0076   13.6   0.0    1.2  1  TIGR01449 PGP_bact: phosphoglycolate phosphatase, bacterial
      0.009   13.8   0.0      0.013   13.3   0.0    1.3  1  TIGR01990 bPGM: beta-phosphoglucomutase
  ------ inclusion threshold ------
       0.01   13.9   0.0      0.017   13.1   0.0    1.4  1  TIGR02009 PGMB-YQAB-SF: beta-phosphoglucomutase family hydrolase
      0.014   13.0   0.0       0.02   12.5   0.0    1.4  1  TIGR02252 DREG-2: HAD hydrolase, REG-2-like, family IA
      0.016   12.6   0.0       0.06   10.7   0.0    1.8  2  TIGR01668 YqeG_hyp_ppase: HAD phosphatase, family IIIA
      0.031   12.1   0.0      0.049   11.5   0.0    1.3  1  TIGR01428 HAD_type_II: haloacid dehalogenase, type II


Domain annotation for each model (and alignments):
>> TIGR01993  Pyr-5-nucltdase: pyrimidine 5'-nucleotidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  123.1   0.0   5.8e-39   2.4e-36       3     183 .]       2     181 ..       1     181 [. 0.93

  Alignments for each domain:
  == domain 1    score: 123.1 bits;  conditional E-value: 5.8e-39
   TIGR01993   3 llFDlDntLypssagifklikrniteflaeklklseeeaeklrkdyykeyGttlaGLvil...heidadeyleevhdrlpyeklkpdpelrnlllklk..qrkiiftNadkahaeralkrLgied.cFdgiidieaanlelilKPspeayekalreag.vdpekaifldDsarNiaaakalglktvlv 183
                 ++ D D++Ly+++    k i  +i +++ ekl++s+e+      d+yk++Gt l+GL +     + +  e+l+evh+ ++y+++k+dp+l ++l+k      ++ift + k+haer+l+r+g++   + giid+ + +l+  +K +p  +++a+r+ag  +p++++f dDs++Ni+aak+lg++tvlv
  MMETSP1137-20121227|2462_1   2 IFIDCDDCLYQNDWSTAKKITSSIAAYV-EKLGVSKEKSY----DLYKQHGTCLKGLLVEgiiDDAQVGEFLHEVHQ-IDYSDIKEDPALFDVLKKACdvAPCWIFTASAKEHAERCLERIGLSSlPWKGIIDTRDCGLD--TKHTPSSFKAAMRIAGvSEPSNCLFCDDSVKNIVAAKQLGWRTVLV 181
                 789************************8.68******975....68***********976334677888********.*****************9986778***********************78*************..8***************7789************************96 PP

>> TIGR01509  HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.0      0.66   2.7e+02       2      16 ..       2      16 ..       1      48 [. 0.73
   2 ?    0.2   0.0      0.39   1.6e+02     106     128 ..      75      97 ..      62     101 .. 0.80
   3 !   34.2   0.0   1.3e-11   5.4e-09     110     154 .]     136     181 ..     127     181 .. 0.96

  Alignments for each domain:
  == domain 1    score: -0.5 bits;  conditional E-value: 0.66
   TIGR01509  2 ilFDlDgvLvdtekg 16
                i++D+D++L+  + +
  MMETSP1137-20121227|2462_1  2 IFIDCDDCLYQNDWS 16
                788999999975544 PP

  == domain 2    score: 0.2 bits;  conditional E-value: 0.39
   TIGR01509 106 dvgsgKPdpdiylqalkklglkp 128
                 d+  +K dp+++  + k+ +++p
  MMETSP1137-20121227|2462_1  75 DYSDIKEDPALFDVLKKACDVAP 97 
                 56779********9999999988 PP

  == domain 3    score: 34.2 bits;  conditional E-value: 1.3e-11
   TIGR01509 110 gKPdpdiylqalkklglk.peeclfvdDsaagieaakaaGmktvlv 154
                 +K  p+ +++a++  g++ p++clf dDs ++i aak++G++tvlv
  MMETSP1137-20121227|2462_1 136 TKHTPSSFKAAMRIAGVSePSNCLFCDDSVKNIVAAKQLGWRTVLV 181
                 6899****************************************97 PP

>> TIGR02253  CTE7: HAD hydrolase, TIGR02253 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1   0.0   1.1e-07   4.7e-05      75     220 ..      53     207 ..       1     208 [. 0.76

  Alignments for each domain:
  == domain 1    score: 21.1 bits;  conditional E-value: 1.1e-07
   TIGR02253  75 p........klvaeaviaylklklaylkvypdvvkvLleLresGyrlgliTdgltekqweklerlgvrdf.Fdavivseelgv.eKPhpkiFkaalkrlgv.kpeeavmvGDrlekDikGaknlglktvwinrgkskkeeddvvekpdfeisslrel 220
                 +          v e++  ++++ +  +k+ p   +vL++  +      + T + +e     ler+g+  + +  +i   + g+  K  p+ Fkaa++ +gv +p ++++  D+ +k i  ak+lg  tv++   +  +  + + +++d +i sl+el
  MMETSP1137-20121227|2462_1  53 LlvegiiddAQVGEFLHEVHQIDYSDIKEDPALFDVLKKACDV-APCWIFTASAKEHAERCLERIGLSSLpWKGIIDTRDCGLdTKHTPSSFKAAMRIAGVsEPSNCLFCDDS-VKNIVAAKQLGWRTVLVGLYDRDHGTKITCPEADAHIASLHEL 207
                 2334444556777888888889999999999999999988888.88889999999999999999999998667788778888736999*************558888887665.688************99988888778889999*******9997 PP

>> TIGR02247  HAD-1A3-hyp: epoxide hydrolase N-terminal domain-like phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   0.0   1.4e-07   5.8e-05     161     195 ..     146     181 ..     132     187 .. 0.84

  Alignments for each domain:
  == domain 1    score: 20.8 bits;  conditional E-value: 1.4e-07
   TIGR02247 161 vlerlgv.kPeeivfLDDLgsnlkaAaklGittikv 195
                 +++  gv +P++++f DD  +n+ aA++lG+ t++v
  MMETSP1137-20121227|2462_1 146 AMRIAGVsEPSNCLFCDDSVKNIVAAKQLGWRTVLV 181
                 555566636*************************99 PP

>> TIGR01449  PGP_bact: phosphoglycolate phosphatase, bacterial
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   0.0   1.8e-05    0.0076     139     213 .]     135     211 ..      91     211 .. 0.76

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 1.8e-05
   TIGR01449 139 qrkPdPePLllaaerlgv.epaqmvyvGDsevDiaaArAAGlpsvllt.yGYrygeaveelpadvlldsleellalL 213
                 + k  P   ++a    gv ep ++++  Ds+ +i aA+  G ++vl+  y   +g  +   +ad+ + sl+el+alL
  MMETSP1137-20121227|2462_1 135 DTKHTPSSFKAAMRIAGVsEPSNCLFCDDSVKNIVAAKQLGWRTVLVGlYDRDHGTKITCPEADAHIASLHELEALL 211
                 5677788888888777874699*********************9998614545555667777899999999999887 PP

>> TIGR01990  bPGM: beta-phosphoglucomutase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   0.0   3.1e-05     0.013     107     187 .]      99     182 ..      33     182 .. 0.85

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 3.1e-05
   TIGR01990 107 kialasasknaklvleklelkdk.fdaivdaaevk.kgkPdPeiFlaaaeklgvs.peecigieDaeaGieaikaagilavgvg 187
                  i  asa + a++ le+++l++  ++ i+d+++    +k  P  F aa++  gvs p++c+  +D+   i a+k+ g  +v vg
  MMETSP1137-20121227|2462_1  99 WIFTASAKEHAERCLERIGLSSLpWKGIIDTRDCGlDTKHTPSSFKAAMRIAGVSePSNCLFCDDSVKNIVAAKQLGWRTVLVG 182
                 46679***************9854899****9986379****************549******************999888776 PP

>> TIGR02009  PGMB-YQAB-SF: beta-phosphoglucomutase family hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   4.2e-05     0.017      96     186 .]      88     181 ..      63     181 .. 0.87

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 4.2e-05
   TIGR02009  96 nlleelkkkkiavalgsssknakaiLaklgltdl.fdavvdasevke.gKPaPetFLaaaekLgvk.peecvvfEDaeaGveaaraagmfavav 186
                 +l+++   ++  + ++s+++ a++ L+++gl +l  + ++d ++     K  P +F aa +  gv+ p++c+  +D+   + aa++ g ++v v
  MMETSP1137-20121227|2462_1  88 VLKKACDVAPCWIFTASAKEHAERCLERIGLSSLpWKGIIDTRDCGLdTKHTPSSFKAAMRIAGVSePSNCLFCDDSVKNIVAAKQLGWRTVLV 181
                 566667777778889*****************975899*****996449***************9559*****************999988865 PP

>> TIGR02252  DREG-2: HAD hydrolase, REG-2-like, family IA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   4.9e-05      0.02     160     203 .]     137     180 ..      85     180 .. 0.81

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 4.9e-05
   TIGR02252 160 KPdpkIFekaleklg.ikpeevlhiGDslekDvegakaaGlrall 203
                 K  p  F+ a++ +g  +p+++l++ Ds+++ + +ak++G+r +l
  MMETSP1137-20121227|2462_1 137 KHTPSSFKAAMRIAGvSEPSNCLFCDDSVKN-IVAAKQLGWRTVL 180
                 777889********96789******888765.999******9876 PP

>> TIGR01668  YqeG_hyp_ppase: HAD phosphatase, family IIIA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0      0.53   2.2e+02      28      44 ..       2      18 ..       1      35 [. 0.71
   2 ?   10.7   0.0   0.00015      0.06      90     136 ..     136     182 ..     123     210 .. 0.85

  Alignments for each domain:
  == domain 1    score: -0.9 bits;  conditional E-value: 0.53
   TIGR01668 28 vvlDkDntlvepdsnev 44
                + +D D++l + d   +
  MMETSP1137-20121227|2462_1  2 IFIDCDDCLYQNDWSTA 18
                56899***998876544 PP

  == domain 2    score: 10.7 bits;  conditional E-value: 0.00015
   TIGR01668  90 vKkpgkafrralkemglt.seqvvvvGDrlfTDvllgnrnGsltilve 136
                  K ++++f++a++  g++ +++++   D+ +  +++++ +G +t+lv 
  MMETSP1137-20121227|2462_1 136 TKHTPSSFKAAMRIAGVSePSNCLFCDDS-VKNIVAAKQLGWRTVLVG 182
                 68999*************88888877665.679*************96 PP

>> TIGR01428  HAD_type_II: haloacid dehalogenase, type II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   0.00012     0.049     108     190 ..      96     181 ..      63     188 .. 0.86

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 0.00012
   TIGR01428 108 lklviLsNgstatlkslvkkagld.lefdallsadavr.aYKPapkvYelalealgvk.peevllvasnawDlkgAkklGlktvwv 190
                 ++  i + + ++  ++ +++ gl+ l+++ +++  + +   K  p  ++ a++  gv+ p++ l++  ++ ++ +Ak+lG +tv v
  MMETSP1137-20121227|2462_1  96 APCWIFTASAKEHAERCLERIGLSsLPWKGIIDTRDCGlDTKHTPSSFKAAMRIAGVSePSNCLFCDDSVKNIVAAKQLGWRTVLV 181
                 5677889999999999999999963689**99998887358****************989***********************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (226 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        90  (0.0219405); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                        20  (0.00487567); expected 4.1 (0.001)
Passed Fwd filter:                        10  (0.00243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.27u 0.16s 00:00:00.43 Elapsed: 00:00:00.41
# Mc/sec: 727.55
//
Query:       MMETSP1137-20121227|2464_1  [L=39]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (39 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        52  (0.0126767); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.12s 00:00:00.23 Elapsed: 00:00:00.24
# Mc/sec: 214.48
//
Query:       MMETSP1137-20121227|2465_1  [L=220]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (220 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       115  (0.0280351); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.16s 00:00:00.36 Elapsed: 00:00:00.85
# Mc/sec: 341.62
//
Query:       MMETSP1137-20121227|2467_1  [L=372]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      1e-07   29.7   0.1    1.5e-07   29.2   0.0    1.2  1  TIGR00231 small_GTP: small GTP-binding protein domain


Domain annotation for each model (and alignments):
>> TIGR00231  small_GTP: small GTP-binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.2   0.0   3.7e-11   1.5e-07       3      69 ..      96     159 ..      94     172 .. 0.86

  Alignments for each domain:
  == domain 1    score: 29.2 bits;  conditional E-value: 3.7e-11
   TIGR00231   3 eikivivGhvdvGKstLlnsllknkisiteskpgvtrdyvteqieedGktykvnllDTaGqedfdai 69 
                 e k++++G +++GK+t+l++l+  +     ++p+++++++t ++    k  ++ ++D++G+++++++
  MMETSP1137-20121227|2467_1  96 ELKLLMLGLDAAGKTTILYKLKLGE--VLMTVPTIGFNVETLKFNKSTKG-EFVVWDVGGKDKVRPL 159
                 5799*********************..566679*********99988855.*********9999655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (372 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        55  (0.0134081); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.28u 0.15s 00:00:00.43 Elapsed: 00:00:00.90
# Mc/sec: 545.55
//
Query:       MMETSP1137-20121227|2469_1  [L=403]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.3e-47  158.4   0.0    2.2e-45  152.8   0.0    2.6  1  TIGR01456 CECR5: HAD hydrolase, TIGR01456 family
    2.3e-23   81.1   0.0    4.1e-22   77.0   0.0    2.7  2  TIGR01460 HAD-SF-IIA: HAD hydrolase, family IIA
    0.00018   19.5   0.0       0.17    9.8   0.0    3.0  2  TIGR01662 HAD-SF-IIIA: HAD hydrolase, family IIIA
      0.003   14.9   0.0       0.15    9.4   0.0    2.2  2  TIGR02254 YjjG/YfnB: HAD hydrolase, TIGR02254 family
  ------ inclusion threshold ------
      0.011   13.1   0.0      0.044   11.1   0.0    2.0  2  TIGR01457 HAD-SF-IIA-hyp2: HAD hydrolase, TIGR01457 family
      0.013   13.7   0.3      0.051   11.8   0.0    2.2  3  TIGR01549 HAD-SF-IA-v1: HAD hydrolase, family IA, variant 1
      0.017   12.3   0.1      0.086   10.0   0.0    2.0  1  TIGR01458 HAD-SF-IIA-hyp3: HAD hydrolase, TIGR01458 family


Domain annotation for each model (and alignments):
>> TIGR01456  CECR5: HAD hydrolase, TIGR01456 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  152.8   0.0   3.7e-48   2.2e-45       2     321 .]      30     397 ..      29     397 .. 0.75

  Alignments for each domain:
  == domain 1    score: 152.8 bits;  conditional E-value: 3.7e-48
   TIGR01456   2 gfalDiDGvllrGkkpiagaskalrrLvddsgalkiPvllltngG.glserkraeelsalL.....gve.......vsplqviqshsPfkk.lvnkyek.rvlaaGkg..evaevaegyGfknvvsvdelasyfddidpl.....aglvdeerrkks.......rdlpdvlskrveavlvlsdPvdWeadiqvisDvlrseglpgk..elgkPslpvyisndDLlyaaefklerlGqGafrlllesiy......qkv....tgkpLeye..slGkPskltykyaedvlkeiekrlagskqsaapfkklymvGDnPksDiiGarqag...............lfsilvktgvydgkdelkefkadlvvdsveeavtkiL 321
                 ++a+DiDGv+  G++  a  +kal++ ++      +P++++tngG gl+e + a ++ +++     g +       ++ + +++s+sP+k+ l+ k ++ rvl  G +  +v +va +yG+  v + +++a+++  i+p+     ag ++  + + +        + +  + + + a+lv+ dP+ W   +qv +Dvl s        + + P +pv +sn D+l++++ +  r+GqGaf+++l+ +y      ++v    +++ +       GkP+ +t+++ e  l+    +la s++ a+ +++ ymvGDnP+sD+ Gar+a                ++ +lvktgvy+++de +   a+ vv+ v eav+ iL
  MMETSP1137-20121227|2469_1  30 AIAFDIDGVFKYGRHWSADGLKALQQCQKA----GVPYVFVTNGGgGLTEATYAAQFKEKVtsvaeGADpaapxppINENCMLLSYSPWKEnLAPKLKNkRVLLIGDPkeKVLNVAASYGLTRVTHYEDYATMHATINPFrqarkAGTSHTAVANSAdasfnalSEKDLADDDPFCAILVMCDPYSWFEALQVXVDVLCSPRPIQLefDPAAPPVPVHFSNPDVLWKTQHPFARFGQGAFKIALRALYvtrlrhLRVpeetHDERVAASfkQWGKPTDFTFRFVEARLR----SLAPSESDASTVERFYMVGDNPASDMEGARRANifhkanaedggkntsWNGVLVKTGVYKDGDESN--LASVVVEGVAEAVDWIL 397
                 79**************99999999999888....8********8626889887766665552111133332332334556799******95489999888******8733689***************************333332333333222221000000222223445688***********************9875544114577***********************************95444332341111444443333378***************9....677799999********************9764444445555678889***************976..57899********9987 PP

>> TIGR01460  HAD-SF-IIA: HAD hydrolase, family IIA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.0   0.0   6.9e-25   4.1e-22       1     236 [.      31     346 ..      31     350 .. 0.81
   2 ?   -1.1   0.1      0.48   2.8e+02     232     246 .]     357     371 ..     356     371 .. 0.94

  Alignments for each domain:
  == domain 1    score: 77.0 bits;  conditional E-value: 6.9e-25
   TIGR01460   1 flfDidGVlvrgkkpipgalealnrlrakgkpvvfvTNns.grseedlaeklssllgvd............vspeqiitshsvtkellk.kfenervllig..egelreslenlgfknvvtvddlrkivedid.......v.....................edleaekiqaavlvgepsdlsydelakaakllseg...........kvpfiaane.......eklerlgdgafrlglgsil......ekikeksgreeivv.....GKPspalykaaeellkarakrr.......kvlmvGDnlrtDvlgAkea 236
                 ++fDidGV   g  + +  l+al++  ++g+p+vfvTN++ g +e+ +a++++++                ++++ ++ s s+ ke l+ k +n+rvllig  ++++ +++  +g + v + +d++ +   i+                             +  + + + a++++ +p ++ + +++ ++ l s +            vp+ ++n         ++ r+g+gaf ++l++++       ++ e++  e++ +     GKP++++++++e++l+  a +        + +mvGDn+++D+ gA++a
  MMETSP1137-20121227|2469_1  31 IAFDIDGVFKYGRHWSADGLKALQQCQKAGVPYVFVTNGGgGLTEATYAAQFKEKVTSVaegadpaapxppINENCMLLSYSPWKENLApKLKNKRVLLIGdpKEKVLNVAASYGLTRVTHYEDYATMHATINpfrqarkAgtshtavansadasfnalsekDLADDDPFCAILVMCDPYSWFEALQVXVDVLCSPRpiqlefdpaapPVPVHFSNPdvlwktqHPFARFGQGAFKIALRALYvtrlrhLRVPEETHDERVAAsfkqwGKPTDFTFRFVEARLRSLAPSEsdastveRFYMVGDNPASDMEGARRA 346
                 68************************************862699*********954333111111111111345668889999999999************4456899*******999**********999999776665055566777888889999997555555667788888999****************99***********888888888888888899**************9984444333456666665532122444****************98877779999******************997 PP

  == domain 2    score: -1.1 bits;  conditional E-value: 0.48
   TIGR01460 232 gAkeaGldslLvltG 246
                 g+k+  ++ +Lv+tG
  MMETSP1137-20121227|2469_1 357 GGKNTSWNGVLVKTG 371
                 799***********9 PP

>> TIGR01662  HAD-SF-IIIA: HAD hydrolase, family IIIA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.8   0.0   0.00029      0.17       2     134 ..      30     147 ..      29     153 .. 0.71
   2 !    6.1   0.0     0.004       2.3     108     131 ..     323     346 ..     299     353 .. 0.87

  Alignments for each domain:
  == domain 1    score: 9.8 bits;  conditional E-value: 0.00029
   TIGR01662   2 lvvlDlDgtLiddvdyvteedeaelypevidalaelkkeGykvvivtNqsgigrgkesveevsekveslleelgvpidvliacphskceyrKpktgmleealkrlneidakesvvvGDavltDleaakrvGla 134
                 ++ +D+Dg+      y      + +  +  +al++ +k+G+  v vtN  g  +    +++++ekv s++e  +       + +    ++   + + ++e+l     ++ k+++++GD + + l++a   Gl+
  MMETSP1137-20121227|2469_1  30 AIAFDIDGVFK----YG-----RHWSADGLKALQQCQKAGVPYVFVTNGGGGLTEATYAAQFKEKVTSVAEGADPAAPXPPINE----NCMLLSYSPWKENLAPK--LKNKRVLLIGDPKEKVLNVAASYGLT 147
                 57888888888....22.....2234467899*****************98777778899**********99444333333333....44434456666665555..88899999999776767777777766 PP

  == domain 2    score: 6.1 bits;  conditional E-value: 0.004
   TIGR01662 108 eidakesvvvGDavltDleaakrv 131
                 +++ ++  +vGD+  +D+e+a+r+
  MMETSP1137-20121227|2469_1 323 ASTVERFYMVGDNPASDMEGARRA 346
                 5788999*************9886 PP

>> TIGR02254  YjjG/YfnB: HAD hydrolase, TIGR02254 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.0     0.019        11     166     211 ..     121     166 ..     116     172 .. 0.82
   2 !    9.4   0.0   0.00025      0.15     169     191 ..     326     348 ..     299     358 .. 0.86

  Alignments for each domain:
  == domain 1    score: 3.2 bits;  conditional E-value: 0.019
   TIGR02254 166 klkkeevlmvGDsleaDikGaanaGldtvwlnpdrkpkpddiapay 211
                 klk+++vl++GD  e  ++ aa  Gl  v    d  +    i p +
  MMETSP1137-20121227|2469_1 121 KLKNKRVLLIGDPKEKVLNVAASYGLTRVTHYEDYATMHATINPFR 166
                 78999*********************99987777766666666655 PP

  == domain 2    score: 9.4 bits;  conditional E-value: 0.00025
   TIGR02254 169 keevlmvGDsleaDikGaanaGl 191
                  e+  mvGD++ +D++Ga+ a +
  MMETSP1137-20121227|2469_1 326 VERFYMVGDNPASDMEGARRANI 348
                 57889**************9876 PP

>> TIGR01457  HAD-SF-IIA-hyp2: HAD hydrolase, TIGR01457 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   7.5e-05     0.044       6      43 ..      33      70 ..      28      90 .. 0.88
   2 ?   -2.2   0.0      0.87   5.1e+02     194     210 ..     325     341 ..     321     348 .. 0.80

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 7.5e-05
   TIGR01457  6 idldGtlykGkekieeavefvkelkkrdvpylfvtnns 43
                 d+dG +  G++   ++ + +++ +k +vpy+fvtn  
  MMETSP1137-20121227|2469_1 33 FDIDGVFKYGRHWSADGLKALQQCQKAGVPYVFVTNGG 70
                69**********************************75 PP

  == domain 2    score: -2.2 bits;  conditional E-value: 0.87
   TIGR01457 194 ekeetllvGdnyatdil 210
                 ++e   +vGdn a+d+ 
  MMETSP1137-20121227|2469_1 325 TVERFYMVGDNPASDME 341
                 567889*****999975 PP

>> TIGR01549  HAD-SF-IA-v1: HAD hydrolase, family IA, variant 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.2       2.8   1.6e+03       1       9 [.      30      38 ..      30      38 .. 0.87
   2 ?   -3.9   0.0       6.3   3.7e+03     126     137 ..     122     132 ..     118     136 .. 0.70
   3 ?   11.8   0.0   8.7e-05     0.051     130     148 ..     327     346 ..     321     347 .. 0.87

  Alignments for each domain:
  == domain 1    score: -2.8 bits;  conditional E-value: 2.8
   TIGR01549  1 ailfDidGT 9 
                ai fDidG+
  MMETSP1137-20121227|2469_1 30 AIAFDIDGV 38
                699****96 PP

  == domain 2    score: -3.9 bits;  conditional E-value: 6.3
   TIGR01549 126 lglepevlhvGD 137
                 l+  ++vl +GD
  MMETSP1137-20121227|2469_1 122 LKN-KRVLLIGD 132
                 444.68888998 PP

  == domain 3    score: 11.8 bits;  conditional E-value: 8.7e-05
   TIGR01549 130 pevlhvGDn.lsDieaakna 148
                 ++ ++vGDn  sD+e+a++a
  MMETSP1137-20121227|2469_1 327 ERFYMVGDNpASDMEGARRA 346
                 6789**************99 PP

>> TIGR01458  HAD-SF-IIA-hyp3: HAD hydrolase, TIGR01458 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.0   0.00015     0.086     212     256 ..     357     398 ..     296     399 .. 0.80

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 0.00015
   TIGR01458 212 GaqavGmrgvqvrtGkyrpsdeekievkpdltvdslaeavdlilq 256
                 G ++    gv+v+tG y+  de ++   + + v+ +aeavd il+
  MMETSP1137-20121227|2469_1 357 GGKNTSWNGVLVKTGVYKDGDESNL---ASVVVEGVAEAVDWILK 398
                 334556789**********999876...67899********9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (403 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       129  (0.0314481); expected 82.0 (0.02)
Passed bias filter:                      118  (0.0287665); expected 82.0 (0.02)
Passed Vit filter:                        19  (0.00463189); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.40u 0.17s 00:00:00.57 Elapsed: 00:00:00.74
# Mc/sec: 718.81
//
Query:       MMETSP1137-20121227|2470_1  [L=252]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (252 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        96  (0.0234032); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.12s 00:00:00.35 Elapsed: 00:00:00.35
# Mc/sec: 950.32
//
Query:       MMETSP1137-20121227|2471_1  [L=630]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (630 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       125  (0.0304729); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.15s 00:00:00.55 Elapsed: 00:00:00.50
# Mc/sec: 1663.06
//
Query:       MMETSP1137-20121227|2472_1  [L=73]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (73 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        50  (0.0121892); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.27
# Mc/sec: 356.86
//
Query:       MMETSP1137-20121227|2473_1  [L=362]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (362 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       132  (0.0321794); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.16s 00:00:00.44 Elapsed: 00:00:01.05
# Mc/sec: 455.05
//
Query:       MMETSP1137-20121227|2474_1  [L=256]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (256 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        83  (0.020234); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.13s 00:00:00.35 Elapsed: 00:00:00.75
# Mc/sec: 450.52
//
Query:       MMETSP1137-20121227|2475_1  [L=173]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (173 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        47  (0.0114578); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.18s 00:00:00.37 Elapsed: 00:00:00.25
# Mc/sec: 913.36
//
Query:       MMETSP1137-20121227|2476_1  [L=372]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.7e-27   92.6   0.0    7.6e-27   91.9   0.0    1.3  1  TIGR00177 molyb_syn: molybdenum cofactor synthesis domain
    3.8e-20   70.0   0.1    7.1e-20   69.1   0.0    1.4  1  TIGR02667 moaB_proteo: molybdenum cofactor biosynthesis protein B


Domain annotation for each model (and alignments):
>> TIGR00177  molyb_syn: molybdenum cofactor synthesis domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.9   0.0   3.7e-30   7.6e-27       2     146 ..     206     360 ..     205     361 .. 0.92

  Alignments for each domain:
  == domain 1    score: 91.9 bits;  conditional E-value: 3.7e-30
   TIGR00177   2 lrvavisvgdelleegqieDtngallaalle.......eaglevkkvelgivpDdkeeikeilrkave......eadvvlttGGtGvgerDvtkealaellekelegfeelfrklsle.vpt.vlsrpgkpavagvrestlifnLPGspkavkvtfevlv 146
                 l+v++++v+d++++ g + D +g+ ++++le        a +     + ++v+Dd  +i ++lr++++       +++vlttGGtG ++rDvt+ea+ ++++++++g+ el+ ++ ++  p   lsr+    +agvr++tli+nLPG p+avk+ + vl+
  MMETSP1137-20121227|2476_1 206 LTVGILTVSDRAAA-GIYSDLSGPEVRQALEafstglgAASWDLTISRSCTVADDSAQICAVLREWSDssmtaaACNLVLTTGGTGLSPRDVTPEATLAVVDRVVPGIPELLLREAVKvEPLaALSRA----AAGVRGRTLIVNLPGRPAAVKQNLSVLL 360
                 579**********6.**************998877777777888777899******************99999999**************************************999966779*****....*********************9998875 PP

>> TIGR02667  moaB_proteo: molybdenum cofactor biosynthesis protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.1   0.0   3.5e-23   7.1e-20       3     142 ..     204     357 ..     202     362 .. 0.79

  Alignments for each domain:
  == domain 1    score: 69.1 bits;  conditional E-value: 3.5e-23
   TIGR02667   3 vplaiavltvsdsrtee..ddtsGqvlverlke.......aGh..elaeraivkddlyqiraqvseWiade....evdvilitGGtGltgrdvtpealeplldkkveGfgelfraisyeeiGtstiqsralagvanktlvfvlPGstgavrtawd 142
                 v l++ +ltvsd+  +   +d sG  ++++l++       a    ++++ + v+dd +qi a+++eW +++    + + +l+tGGtGl  rdvtpea  +++d+ v+G  el+ + +++ +   +  sra agv  +tl++ lPG + av++ + 
  MMETSP1137-20121227|2476_1 204 VGLTVGILTVSDRAAAGiySDLSGPEVRQALEAfstglgaASWdlTISRSCTVADDSAQICAVLREWSDSSmtaaACNLVLTTGGTGLSPRDVTPEATLAVVDRVVPGIPELLLREAVK-VEPLAALSRAAAGVRGRTLIVNLPGRPAAVKQNLS 357
                 67899*******98764339****99999887522221112222245677899**************8875222267889*******************************99876665.5555566************************9765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (372 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       128  (0.0312043); expected 82.0 (0.02)
Passed bias filter:                      104  (0.0253535); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.31u 0.15s 00:00:00.46 Elapsed: 00:00:00.28
# Mc/sec: 1753.57
//
Query:       MMETSP1137-20121227|2477_1  [L=2133]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      3e-26   89.9   4.3    5.9e-26   88.9   3.0    1.4  1  TIGR03150 fabF: beta-ketoacyl-acyl-carrier-protein synthase II
    1.3e-23   79.6   3.2    4.1e-22   74.6   1.9    2.2  2  TIGR02813 omega_3_PfaA: polyketide-type polyunsaturated fatty acid synthase PfaA
    6.3e-07   26.5   0.4    1.3e-06   25.5   0.3    1.4  1  TIGR01930 AcCoA-C-Actrans: acetyl-CoA C-acetyltransferase
    4.6e-06   23.6   0.1    1.1e-05   22.3   0.0    1.6  2  TIGR01317 GOGAT_sm_gam: glutamate synthase, NADH/NADPH, small subunit
    5.7e-06   23.0   0.5     0.0015   15.0   0.1    2.4  2  TIGR01318 gltD_gamma_fam: glutamate synthase, small subunit
    6.7e-06   23.0   0.6      0.029   11.0   0.1    2.4  2  TIGR01316 gltA: glutamate synthase (NADPH), homotetrameric
    1.6e-05   21.7   0.6    2.6e-05   20.9   0.4    1.3  1  TIGR02734 crtI_fam: phytoene desaturase
    6.7e-05   19.7   0.8    0.00035   17.3   0.0    2.1  2  TIGR01292 TRX_reduct: thioredoxin-disulfide reductase
    0.00028   17.9   3.1    0.00057   16.9   2.1    1.5  1  TIGR03364 HpnW_proposed: FAD dependent oxidoreductase TIGR03364
    0.00047   17.5   0.0    0.00091   16.6   0.0    1.4  1  TIGR00128 fabD: malonyl CoA-acyl carrier protein transacylase
    0.00049   16.8   0.4     0.0025   14.5   0.1    2.3  2  TIGR04018 Bthiol_YpdA: putative bacillithiol system oxidoreductase, YpdA family
    0.00062   17.4   0.8    0.00062   17.4   0.5    1.9  2  TIGR02032 GG-red-SF: geranylgeranyl reductase family
     0.0007   16.2   1.6     0.0011   15.5   0.6    1.5  1  TIGR01813 flavo_cyto_c: flavocytochrome c
    0.00094   16.1   0.2     0.0014   15.5   0.1    1.2  1  TIGR00031 UDP-GALP_mutase: UDP-galactopyranose mutase
     0.0018   15.2   1.1     0.0031   14.5   0.8    1.3  1  TIGR02352 thiamin_ThiO: glycine oxidase ThiO
     0.0021   14.6   0.3     0.0033   14.0   0.2    1.2  1  TIGR02733 desat_CrtD: C-3',4' desaturase CrtD
     0.0024   14.5   2.1      0.028   10.9   0.2    2.2  2  TIGR01350 lipoamide_DH: dihydrolipoyl dehydrogenase
     0.0027   14.8   0.0     0.0053   13.8   0.0    1.4  1  TIGR00292 TIGR00292: thiazole biosynthesis enzyme
      0.005   12.1   4.8       0.08    8.1   0.0    2.4  3  TIGR03315 Se_ygfK: putative selenate reductase, YgfK subunit
     0.0078   13.0   0.2      0.012   12.4   0.2    1.2  1  TIGR02732 zeta_caro_desat: carotene 7,8-desaturase
  ------ inclusion threshold ------
      0.011   12.3   0.1      0.018   11.6   0.1    1.2  1  TIGR02731 phytoene_desat: phytoene desaturase
      0.017   11.8   0.2       0.03   11.0   0.1    1.4  1  TIGR02730 carot_isom: carotene isomerase
       0.17    8.3   0.2       0.26    7.6   0.1    1.2  1  TIGR00562 proto_IX_ox: protoporphyrinogen oxidase


Domain annotation for each model (and alignments):
>> TIGR03150  fabF: beta-ketoacyl-acyl-carrier-protein synthase II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.9   3.0   3.3e-28   5.9e-26     131     406 ..     523     812 ..     509     813 .. 0.82

  Alignments for each domain:
  == domain 1    score: 88.9 bits;  conditional E-value: 3.3e-28
   TIGR03150 131 fipsaiinlaagqvsiklglkgpnlavvtACatgthaigeaarlikegeadvmiagGaea.aitelgiagFaalkalstrnddpekasrPfdkdrdGFvlgeGagvlvlEelehAkaRgAk..iyaevvGyglsaDAyHitapaeegegaaramkaalkdaglkpeevdyinaHgtstplgdkaEtkaikkvfgehakk......lavsstKsmtGHlLGaaGaveavitvlaleeqvvp......ptin..leepdeecdldyvpnkareaki.evalsnsfGFGGtnaslvl 406
                  i ++i+  +a++v+  ++l+gp+l++ tAC+++  a+ +a+r  ++g++d +i+gG +  a ++ ++ +F++l+  +    +p++ +  f++  dG+v +eG+ v+ l     A    A     a ++G ++++ +    ++a + ++++r ++ a +dag++pe++  i  Hgt t+lgd +E++a+ +v  ++a         +v+++K   GHl  aaG+v  +  +l le+  vp      p +n  le+  ee +l++ pn+         +   sfGF G+na +vl
  MMETSP1137-20121227|2477_1 523 AIGTSIS-ALAARVANVHNLQGPALTINTACSSALVAVDQALRDARAGRIDYAIVGGVNLiASSPSAVDAFTQLRRANM--LSPTARCHTFSAAADGYVRAEGG-VVFLVRSTAAPPPAAPlpCRATILGAAINQNSTRKPMSAVDPAAQERVVSLACADAGISPEQLAAIELHGTGTKLGDPVELSALARVTANAAGAkgmrggCTVTAAKMHFGHLESAAGGVGLLKVCLMLEKRKVPafsvdaPGLNsaLESILEESRLQLPPNDGMPLVDgAFVGVSSFGFAGNNAHVVL 812
                 4555555.456789999****************************************996267899*******998777..689******************96.5556666677777775125799******9999998888889999*******************************************9998743223333789*****************************998322222233322556667777888888777654414455789********9997 PP

>> TIGR02813  omega_3_PfaA: polyketide-type polyunsaturated fatty acid synthase PfaA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    2.9   0.0    0.0097       1.7     661     713 ..      50     102 ..      34     117 .. 0.84
   2 !   74.6   1.9   2.3e-24   4.1e-22     184     461 ..     530     814 ..     519     820 .. 0.84

  Alignments for each domain:
  == domain 1    score: 2.9 bits;  conditional E-value: 0.0097
   TIGR02813 661 svgqyklltqaGfkadlvaGhsfGelsalcaaGvisdddylklaferGqamaa 713
                  + q +l+   G ++ +  Ghs Gel+a + +G+++    l++a+e G   a+
  MMETSP1137-20121227|2477_1  50 NILQADLWRMWGHEPCYALGHSIGELAAAYVSGILTVPWALRIAYENGTVAAS 102
                 5556667777788999999***************************9987665 PP

  == domain 2    score: 74.6 bits;  conditional E-value: 2.3e-24
   TIGR02813 184 visGrianrfdlGGmncvvdaacaGslaalrlalselvegrsevmitGGvc.tdnspfmymsfs...ktpafttnediqpfdidskGmmiGeGiGmvalkrledaerdGdri..yavikGvGassdGkfksiyaprpeGqakalkrayddaGfapktvGlieahGtGtaaGdvaefsGlssvfsqdndqkq...hialGsvksqiGhtkstaGtaGlikaalalhhkvlpatinvdkpnpkldiedsplylntetrpwlqredglp....rraGissfGfGGtnfhlvlee 461
                  ++ r+an  +l G    +++ac+ +l a+  al +   gr +  i GGv     sp    +f+   ++  ++     + f   + G +  eG G+v l r   a      +   a i G     +   k + a  p  q + +  a  daG +p+ +  ie hGtGt+ Gd  e+s l++v ++    k      ++ + k   Gh  s+aG  Gl+k +l l ++ +pa   vd p  +  +e+    +  e+r  l  +dg+p       G+ssfGf G n h+vl  
  MMETSP1137-20121227|2477_1 530 ALAARVANVHNLQGPALTINTACSSALVAVDQALRDARAGRIDYAIVGGVNlIASSPSAVDAFTqlrRANMLSPTARCHTFSAAADGYVRAEG-GVVFLVRSTAAPPPAAPLpcRATILGAAINQNSTRKPMSAVDPAAQERVVSLACADAGISPEQLAAIELHGTGTKLGDPVELSALARVTANAAGAKGmrgGCTVTAAKMHFGHLESAAGGVGLLKVCLMLEKRKVPA-FSVDAPGLNSALES----ILEESRLQLPPNDGMPlvdgAFVGVSSFGFAGNNAHVVLST 814
                 4678**********************************************73578899888887221466778888999*************9.99******99998877642278999999999999******************************************************9988766641115788899***********************9998886.78998854444443....334556666666666622112579**************975 PP

>> TIGR01930  AcCoA-C-Actrans: acetyl-CoA C-acetyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.5   0.3   7.2e-09   1.3e-06      73     123 ..     542     592 ..     523     618 .. 0.84

  Alignments for each domain:
  == domain 1    score: 25.5 bits;  conditional E-value: 7.2e-09
   TIGR01930  73 svpaltvnrvCaSglqAvalaaqkikaGeadvvvaGGvEsmSrvpillkas 123
                 + palt+n +C+S+l Av +a +  +aG++d +++GGv+ + ++p  ++a 
  MMETSP1137-20121227|2477_1 542 QGPALTINTACSSALVAVDQALRDARAGRIDYAIVGGVNLIASSPSAVDAF 592
                 459****************************************99988764 PP

>> TIGR01317  GOGAT_sm_gam: glutamate synthase, NADH/NADPH, small subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.3   0.0   6.4e-08   1.1e-05      98     182 ..    1587    1675 ..    1582    1683 .. 0.79
   2 ?   -3.8   0.0         5     9e+02     280     312 ..    1811    1843 ..    1804    1876 .. 0.79

  Alignments for each domain:
  == domain 1    score: 22.3 bits;  conditional E-value: 6.4e-08
   TIGR01317   98 PaPcegacvlgisedpvtik.sielaiid.kgfeeGwv.kPrppkkr.tGkkvavvGsGPaGlaaadqlnraGhtvtvferedrvGGll 182 
                  P P eg  +lg + d++++   + +++++  gf++  +  Pr  k   +   v vvGsG  G+  a++l +aGh+v+v e+   vGG+ 
  MMETSP1137-20121227|2477_1 1587 PPPIEGLVALGDAADALAVAeRVARQMMEgTGFDKRSLaLPRNEKPLpSSVDVVVVGSGVLGMIQAQRLREAGHSVAVLEQRALVGGIW 1675
                  778888888988888888752578887774678876551466655442567899********************************985 PP

  == domain 2    score: -3.8 bits;  conditional E-value: 5
   TIGR01317  280 kakgkkvvviGGGdtGadcvgtslrhgaasvlq 312 
                  + +gk+vv+ G G    +   t+l  gaa v+ 
  MMETSP1137-20121227|2477_1 1811 DWRGKRVVIFGMGAFAVENARTALESGAAHVTV 1843
                  567999999999999999999999999888764 PP

>> TIGR01318  gltD_gamma_fam: glutamate synthase, small subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.6   0.0    0.0061       1.1     139     180 ..    1634    1675 ..    1614    1682 .. 0.91
   2 !   15.0   0.1   8.5e-06    0.0015     276     315 ..    1808    1847 ..    1795    1855 .. 0.88

  Alignments for each domain:
  == domain 1    score: 5.6 bits;  conditional E-value: 0.0061
   TIGR01318  139 ktgkrvaviGaGpaGlacadvlaraGvkvvvfdrypeiGGll 180 
                  +++  v v+G+G  G+  a++l  aG  v v ++   +GG+ 
  MMETSP1137-20121227|2477_1 1634 PSSVDVVVVGSGVLGMIQAQRLREAGHSVAVLEQRALVGGIW 1675
                  567789**********************************86 PP

  == domain 2    score: 15.0 bits;  conditional E-value: 8.5e-06
   TIGR01318  276 plidveGkrvvvlGGGdtamdcvrtairlgakkvtcvyrr 315 
                    +d  Gkrvv++G G  a++  rta+  ga++vt v rr
  MMETSP1137-20121227|2477_1 1808 MGVDWRGKRVVIFGMGAFAVENARTALESGAAHVTVVARR 1847
                  557899********************************99 PP

>> TIGR01316  gltA: glutamate synthase (NADPH), homotetrameric
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.7   0.0   0.00041     0.073     126     171 ..    1629    1674 ..    1602    1681 .. 0.86
   2 !   11.0   0.1   0.00016     0.029     272     304 ..    1814    1847 ..    1802    1855 .. 0.92

  Alignments for each domain:
  == domain 1    score: 9.7 bits;  conditional E-value: 0.00041
   TIGR01316  126 eekapstkkkvaviGaGpaGlavaselakkGhevtvfealhkpGGv 171 
                  +ek  ++   v v+G+G  G+  a+ l  +Gh+v v e     GG+
  MMETSP1137-20121227|2477_1 1629 NEKPLPSSVDVVVVGSGVLGMIQAQRLREAGHSVAVLEQRALVGGI 1674
                  6777788999****************************98888887 PP

  == domain 2    score: 11.0 bits;  conditional E-value: 0.00016
   TIGR01316  272 gkkvvviGgGntavdaartalrlGae.vhvvyrr 304 
                  gk+vv+ G G  av+ artal  Ga  v+vv rr
  MMETSP1137-20121227|2477_1 1814 GKRVVIFGMGAFAVENARTALESGAAhVTVVARR 1847
                  8***********************9889999998 PP

>> TIGR02734  crtI_fam: phytoene desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   0.4   1.5e-07   2.6e-05       1      40 [.    1639    1678 ..    1639    1684 .. 0.92

  Alignments for each domain:
  == domain 1    score: 20.9 bits;  conditional E-value: 1.5e-07
   TIGR02734    1 avViGaGlgGLAlAirLaaaGievtvlekrdkpGGRagvl 40  
                  +vV+G+G+ G+  A rL  aG++v vle+r+ +GG  +++
  MMETSP1137-20121227|2477_1 1639 VVVVGSGVLGMIQAQRLREAGHSVAVLEQRALVGGIWSMY 1678
                  69*********************************76665 PP

>> TIGR01292  TRX_reduct: thioredoxin-disulfide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.1      0.34        61       2      33 ..    1638    1669 ..    1636    1679 .. 0.59
   2 !   17.3   0.0     2e-06   0.00035      81     181 ..    1751    1855 ..    1724    1864 .. 0.79

  Alignments for each domain:
  == domain 1    score: 0.1 bits;  conditional E-value: 0.34
   TIGR01292    2 dviiiGaGpaGltaaiYaaranlktlliegke 33  
                  dv+++G+G  G+  a     a+ +++++e+ +
  MMETSP1137-20121227|2477_1 1638 DVVVVGSGVLGMIQAQRLREAGHSVAVLEQRA 1669
                  56666666666666665555555555555544 PP

  == domain 2    score: 17.3 bits;  conditional E-value: 2e-06
   TIGR01292   81 kvdkkerpfkvltedekeykakaviiAtG...akarklgikgeeeflgrGvsyCavCDgal...fknkevavvGggdsAveea.lyLskiakkVtlvhrrdklraeki 181 
                   v ++e+p +  ++ +  ++ak +++A+     ++r l ++g ++f   Gv + ++ D+ +   +++k+v++ G g  Ave+a + L++ a +Vt+v rr    + k+
  MMETSP1137-20121227|2477_1 1751 VVASQESPHHASSQ-TAVVHAKGIVLAINdrvGMPRSLCVPGMDSF--DGVVADGTSDALMgvdWRGKRVVIFGMGAFAVENArTALESGAAHVTVVARRLGTICPKM 1855
                  45666666666655.58999******986222569***********..58********9655559*****************94579************977666655 PP

>> TIGR03364  HpnW_proposed: FAD dependent oxidoreductase TIGR03364
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   2.1   3.2e-06   0.00057       2      33 ..    1638    1669 ..    1637    1674 .. 0.92

  Alignments for each domain:
  == domain 1    score: 16.9 bits;  conditional E-value: 3.2e-06
   TIGR03364    2 dvvvvGaGivGlahAlaaarrGlkVtvierss 33  
                  dvvvvG+G++G+  A + ++ G++V+v+e+ +
  MMETSP1137-20121227|2477_1 1638 DVVVVGSGVLGMIQAQRLREAGHSVAVLEQRA 1669
                  9****************************976 PP

>> TIGR00128  fabD: malonyl CoA-acyl carrier protein transacylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0   5.1e-06   0.00091      68     260 ..      49     235 ..      35     266 .. 0.57

  Alignments for each domain:
  == domain 1    score: 16.6 bits;  conditional E-value: 5.1e-06
   TIGR00128  68 vsvilyellkekgglkPdfvaGHsLGEysAlvaagaldFedalklvkkRgelmqeavpegegamaavlgldeeqlakvleeakeevvslanfnspeqvvisGtkkevekaeallkeagakralpLevsgafH.selmk.paaeklkelleaiqfnk...atvpvisnvdaeaetekdklkekLveqltspvrwtesve 260
                  +++ ++l++  g  +P +++GHs+GE  A +++g+l    al++  + g + ++     + ++   +  d+  l    + +   v + +   +   v + G+ ++v++  +         a+ L+   + H   +++ +a  ++k  l    f++    t ++is ++a++ te d+++      l +pv ++ s+e
  MMETSP1137-20121227|2477_1  49 LNILQADLWRMWG-HEPCYALGHSIGELAAAYVSGILTVPWALRIAYENGTVAASLQ---GKMLHTTIPADQLHLLPHKNMYLAGVNHGVLGTTDVSVTLCGQPEAVQAWLDED-----ESAVELKPQCPWHhPDYLRtEACARFKSDLGPAWFKQkdgSTCQMISSMTASVVTELDAAHW--KAWLSRPVNFKTSLE 235
                 4556666666555.9******************************999999877666...333344444444444333222222222223333444555556555554433322.....24455555555431345431455566666655443331114556666666666666554433..344555666666555 PP

>> TIGR04018  Bthiol_YpdA: putative bacillithiol system oxidoreductase, YpdA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.1   1.4e-05    0.0025       1     184 [.    1638    1847 ..    1638    1865 .. 0.69
   2 ?   -3.7   0.0         5   8.9e+02     235     259 ..    1946    1970 ..    1941    2018 .. 0.66

  Alignments for each domain:
  == domain 1    score: 14.5 bits;  conditional E-value: 1.4e-05
   TIGR04018    1 dviiiGaGPiGlaaaieakkaglsyliiekgalvnsiyk.yPtnmt.ffstseklei.....geiPfisenek..ptrkealeYYrrvaekkklniklyee..vekvkkkeekfevkt..........ekeeyeakkvvvatG.yydipnllnvpGedlpk..vshyykeah...pyvkqkvvvvGgknsavdaalelyrkg.aevtlvvrg 184 
                  dv+++G+G +G+  a  +++ag s+ ++e+ alv  i + y ++ +   s+     +     ++ P   ++++  +t  e l+   ++   k+l+  ++++  v +v  ++++++v +          ++++++ak +v+a     ++p+ l vpG d     v    ++a     + +++vv+ G    av+ a    ++g a+vt+v r+
  MMETSP1137-20121227|2477_1 1638 DVVVVGSGVLGMIQAQRLREAGHSVAVLEQRALVGGIWSmYANSTSqVNSSEGGYCLkeflpNDSPRKHAHNRdhSTAAEVLADLAEL--GKSLSDVTWTQvkVVSVLGANGDYHVVAsqesphhassQTAVVHAKGIVLAINdRVGMPRSLCVPGMDSFDgvVADGTSDALmgvDWRGKRVVIFGMGAFAVENARTALESGaAHVTVVARR 1847
                  89********************************999752655444144444333341011145554444433003333444444444..455555556550055666778999998889999988877778999999999752789*********997432267777787522268899************9886655555178***9986 PP

  == domain 2    score: -3.7 bits;  conditional E-value: 5
   TIGR04018  235 eiendfvlaltGyrpdlelleklgv 259 
                  ++ +d v+  +G++ ++++ e+l  
  MMETSP1137-20121227|2477_1 1946 HLLADIVVGCIGFERNTTFCEQLTG 1970
                  5678999999999999999998753 PP

>> TIGR02032  GG-red-SF: geranylgeranyl reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.1         7   1.3e+03      13      43 ..     859     889 ..     857     897 .. 0.80
   2 !   17.4   0.5   3.5e-06   0.00062       2      36 ..    1638    1672 ..    1637    1675 .. 0.93

  Alignments for each domain:
  == domain 1    score: -3.3 bits;  conditional E-value: 7
   TIGR02032  13 ssaAlrlakkGlrVlllekkelprekeCgga 43 
                 s+a l++a++G +V+  +k++ +   +C g+
  MMETSP1137-20121227|2477_1 859 SFATLDAADTGGKVANADKAARIVWAACCGV 889
                 345578*************998888888775 PP

  == domain 2    score: 17.4 bits;  conditional E-value: 3.5e-06
   TIGR02032    2 DvvvvGaGpaGssaAlrlakkGlrVlllekkelpr 36  
                  DvvvvG G  G + A rl ++G++V++le+++l++
  MMETSP1137-20121227|2477_1 1638 DVVVVGSGVLGMIQAQRLREAGHSVAVLEQRALVG 1672
                  ******************************98765 PP

>> TIGR01813  flavo_cyto_c: flavocytochrome c
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.6   6.4e-06    0.0011       1      41 [.    1638    1678 ..    1638    1690 .. 0.85

  Alignments for each domain:
  == domain 1    score: 15.5 bits;  conditional E-value: 6.4e-06
   TIGR01813    1 dvvvvGsGlAGlsaaleakkaglaevvvleKapviGGN.sai 41  
                  dvvvvGsG+ G+  a ++++ag ++v vle  +++GG  s+ 
  MMETSP1137-20121227|2477_1 1638 DVVVVGSGVLGMIQAQRLREAG-HSVAVLEQRALVGGIwSMY 1678
                  8*********************.**************42444 PP

>> TIGR00031  UDP-GALP_mutase: UDP-galactopyranose mutase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.1   7.7e-06    0.0014       3      38 ..    1638    1673 ..    1636    1686 .. 0.90

  Alignments for each domain:
  == domain 1    score: 15.5 bits;  conditional E-value: 7.7e-06
   TIGR00031    3 dyiivGaGlsGivlaeilaklnkrvlvvekrnhiGG 38  
                  d+++vG+G+ G++ a+ l + +++v v+e+r  +GG
  MMETSP1137-20121227|2477_1 1638 DVVVVGSGVLGMIQAQRLREAGHSVAVLEQRALVGG 1673
                  89*********************************9 PP

>> TIGR02352  thiamin_ThiO: glycine oxidase ThiO
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.8   1.7e-05    0.0031       1      32 [.    1639    1671 ..    1639    1680 .. 0.87

  Alignments for each domain:
  == domain 1    score: 14.5 bits;  conditional E-value: 1.7e-05
   TIGR02352    1 vlviGgGviGlsvAveLakrghkvtllekd.ev 32  
                  v+v+G Gv+G+  A +L ++gh+v++le++  v
  MMETSP1137-20121227|2477_1 1639 VVVVGSGVLGMIQAQRLREAGHSVAVLEQRaLV 1671
                  79**************************98444 PP

>> TIGR02733  desat_CrtD: C-3',4' desaturase CrtD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.2   1.9e-05    0.0033       3      43 ..    1638    1678 ..    1636    1683 .. 0.92

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 1.9e-05
   TIGR02733    3 svvviGaGiaGltaaallakrGlevtlleaaaqvGGCastf 43  
                  +vvv+G+G+ G+  a  l + G +v +le+ a vGG  s +
  MMETSP1137-20121227|2477_1 1638 DVVVVGSGVLGMIQAQRLREAGHSVAVLEQRALVGGIWSMY 1678
                  79**********************************87765 PP

>> TIGR01350  lipoamide_DH: dihydrolipoyl dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.9   0.2   0.00016     0.028       2      37 ..    1637    1673 ..    1636    1676 .. 0.87
   2 ?    2.8   0.1     0.048       8.5     124     200 ..    1762    1845 ..    1732    1862 .. 0.71

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 0.00016
   TIGR01350    2 ydvvviGgGpgGYvaAiraaqlglkvalvek.eklGG 37  
                  +dvvv+G+G  G + A r  ++g +va++e+   +GG
  MMETSP1137-20121227|2477_1 1637 VDVVVVGSGVLGMIQAQRLREAGHSVAVLEQrALVGG 1673
                  79****************************9444576 PP

  == domain 2    score: 2.8 bits;  conditional E-value: 0.048
   TIGR01350  124 ekkekkleakniiiAtGse...prelplk.leedekvvi..tseealelkevpeslvivGgGviGvEfasifaklG.vkvtvie 200 
                  ++++ +++ak i++A   +   pr+l ++ +++   vv   ts+  + ++   +++vi G G+  vE a    + G ++vtv+ 
  MMETSP1137-20121227|2477_1 1762 SSQTAVVHAKGIVLAINDRvgmPRSLCVPgMDSFDGVVAdgTSDALMGVDWRGKRVVIFGMGAFAVENARTALESGaAHVTVVA 1845
                  444578899999999876511156665558766665776336889999********************9765555527899995 PP

>> TIGR00292  TIGR00292: thiazole biosynthesis enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.0     3e-05    0.0053      22      83 ..    1637    1697 ..    1634    1732 .. 0.78

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 3e-05
   TIGR00292   22 sDviivGaGpsGLtaayylakeglkvvvlerklaiGGGswgGGmlfskivvekeakelLdel 83  
                   Dv++vG+G  G+  a+ l ++g  v+vle++ a+ GG+w      +  v  +e+   L+e+
  MMETSP1137-20121227|2477_1 1637 VDVVVVGSGVLGMIQAQRLREAGHSVAVLEQR-ALVGGIWSMYANSTSQVNSSEGGYCLKEF 1697
                  7*****************************98.56678997665555556666666666655 PP

>> TIGR03315  Se_ygfK: putative selenate reductase, YgfK subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.6   0.3       3.2   5.7e+02     669     686 ..    1549    1566 ..    1546    1573 .. 0.84
   2 !    5.9   0.0    0.0021      0.38     537     576 ..    1636    1675 ..    1608    1679 .. 0.86
   3 !    8.1   0.0   0.00045      0.08     666     707 ..    1814    1854 ..    1804    1864 .. 0.87

  Alignments for each domain:
  == domain 1    score: -4.6 bits;  conditional E-value: 3.2
   TIGR03315  669 vvvvGgGntamdaaraal 686 
                  +v vGgG  +m aaraa 
  MMETSP1137-20121227|2477_1 1549 LVAVGGGTPTMIAARAAA 1566
                  5789************96 PP

  == domain 2    score: 5.9 bits;  conditional E-value: 0.0021
   TIGR03315  537 khkvaviGaGPaGlsagyflaraGlpvtvfekkekagGvv 576 
                     v v+G+G  G+  +  l+ aG++v+v+e+++ +gG+ 
  MMETSP1137-20121227|2477_1 1636 SVDVVVVGSGVLGMIQAQRLREAGHSVAVLEQRALVGGIW 1675
                  34699*****************************999985 PP

  == domain 3    score: 8.1 bits;  conditional E-value: 0.00045
   TIGR03315  666 GkrvvvvGgGntamdaaraalrvpGvekvtvvyrrtkkemPa 707 
                  Gkrvv+ G G  a++ ar+al+  G  +vtvv rr     P 
  MMETSP1137-20121227|2477_1 1814 GKRVVIFGMGAFAVENARTALE-SGAAHVTVVARRLGTICPK 1854
                  9*******************98.799*********8776665 PP

>> TIGR02732  zeta_caro_desat: carotene 7,8-desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.4   0.2   6.7e-05     0.012       2      41 ..    1639    1678 ..    1638    1691 .. 0.89

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 6.7e-05
   TIGR02732    2 vaivgaglaglatavelvdaghevelyesrsflggkvgsw 41  
                  v +vg+g+ g+  a  l +agh v + e r+++gg    +
  MMETSP1137-20121227|2477_1 1639 VVVVGSGVLGMIQAQRLREAGHSVAVLEQRALVGGIWSMY 1678
                  789*******************************976555 PP

>> TIGR02731  phytoene_desat: phytoene desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.1   9.8e-05     0.018       2      41 ..    1639    1678 ..    1638    1691 .. 0.90

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 9.8e-05
   TIGR02731    2 vaiagaglaglsaakyladaghtpivleardvlggkvaaw 41  
                  v++ g+g+ g+  a+ l +agh   vle+r ++gg  + +
  MMETSP1137-20121227|2477_1 1639 VVVVGSGVLGMIQAQRLREAGHSVAVLEQRALVGGIWSMY 1678
                  89*********************************87665 PP

>> TIGR02730  carot_isom: carotene isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.1   0.00017      0.03       2      43 ..    1638    1679 ..    1637    1688 .. 0.90

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 0.00017
   TIGR02730    2 daivigsgigglvtatqlaakgakvlvlekylipggsagyfe 43  
                  d++v+gsg+ g++ a +l   g  v vle+  + gg   ++ 
  MMETSP1137-20121227|2477_1 1638 DVVVVGSGVLGMIQAQRLREAGHSVAVLEQRALVGGIWSMYA 1679
                  99****************************999999877775 PP

>> TIGR00562  proto_IX_ox: protoporphyrinogen oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   0.1    0.0014      0.26       4      42 ..    1638    1674 ..    1635    1694 .. 0.90

  Alignments for each domain:
  == domain 1    score: 7.6 bits;  conditional E-value: 0.0014
   TIGR00562    4 kvvvvGgGisGLciayalekerpdvelvlvEakdRvGGk 42  
                  +vvvvG+G+ G+  a++l+    +  + ++E++  vGG 
  MMETSP1137-20121227|2477_1 1638 DVVVVGSGVLGMIQAQRLREA--GHSVAVLEQRALVGGI 1674
                  8*****************999..99999********995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (2133 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       216  (0.0526572); expected 82.0 (0.02)
Passed bias filter:                      151  (0.0368113); expected 82.0 (0.02)
Passed Vit filter:                        68  (0.0165773); expected 4.1 (0.001)
Passed Fwd filter:                        23  (0.00560702); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              23  [number of targets reported over threshold]
# CPU time: 2.08u 0.21s 00:00:02.29 Elapsed: 00:00:01.23
# Mc/sec: 2288.88
//
Query:       MMETSP1137-20121227|2478_1  [L=328]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.87    6.5   5.6       0.88    6.4   3.8    1.2  1  TIGR01628 PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family


Domain annotation for each model (and alignments):
>> TIGR01628  PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   3.8   0.00022      0.88     397     489 ..      97     195 ..      14     266 .. 0.71

  Alignments for each domain:
  == domain 1    score: 6.4 bits;  conditional E-value: 0.00022
   TIGR01628 397 isgrhqaaqqqavvtqavkqqlasqplnfkinqmmlstqnpskpeapnalaqlaqqr.lqaqgrrnlnnrnrnv..lgnm...nkkqqnaaskanqanv 489
                  + +h+ ++q + ++++v+ ql+  p+  +  q  l+ ++  +p+a+   aq+a+q+ +q+  ++++++ + +   +  m   + +qq a    +  ++
  MMETSP1137-20121227|2478_1  97 GTKSHPVSPQFTAEQTSVAPQLEALPISAQLAQLSLTASQHAAPAAAAVTAQQAAQQaAQQAAQQAAQQAAAATisQLLMlsaASQQQRASPPLPPPPM 195
                 344567777778888888888999999999888888888888888766666666555244444555555533331322224432233333333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (328 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       445  (0.108484); expected 82.0 (0.02)
Passed bias filter:                      209  (0.0509508); expected 82.0 (0.02)
Passed Vit filter:                        20  (0.00487567); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.18s 00:00:00.54 Elapsed: 00:00:00.53
# Mc/sec: 816.84
//
Query:       MMETSP1137-20121227|2479_1  [L=208]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (208 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        93  (0.0226719); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.18s 00:00:00.39 Elapsed: 00:00:00.32
# Mc/sec: 857.93
//
Query:       MMETSP1137-20121227|2480_1  [L=201]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (201 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       220  (0.0536324); expected 82.0 (0.02)
Passed bias filter:                      117  (0.0285227); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.13s 00:00:00.41 Elapsed: 00:00:00.40
# Mc/sec: 663.25
//
Query:       MMETSP1137-20121227|2481_1  [L=124]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.6e-22   75.7   3.2    9.3e-22   75.6   2.2    1.0  1  TIGR00601 rad23: UV excision repair protein Rad23
     0.0075   14.6   3.7      0.012   14.0   2.5    1.3  1  TIGR00531 BCCP: acetyl-CoA carboxylase, biotin carboxyl carrier protein
  ------ inclusion threshold ------
       0.22    7.8  11.8       0.27    7.5   8.2    1.1  1  TIGR01348 PDHac_trf_long: dihydrolipoyllysine-residue acetyltransferase


Domain annotation for each model (and alignments):
>> TIGR00601  rad23: UV excision repair protein Rad23
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.6   2.2   6.8e-25   9.3e-22       1     115 [.       1     122 [.       1     124 [] 0.78

  Alignments for each domain:
  == domain 1    score: 75.6 bits;  conditional E-value: 6.8e-25
   TIGR00601   1 vkltlKtlkqqkfkidlepdetvkelKekie.sekg.kdayevaqqkLiyaGkiLsDdktvkeykikekdfvvvmvskkKavk....akaaePaatpesaptptpsatpasv.aekksaaPa 115
                 +k  lKt+k+  f+++++pd+ v ++Ke  + se+g  d ++ + +kLi++Gk+L + + ++ y ike+df+vvm sk+K       a++a+P+atp++a  p+ +atpa+v +++++a+Pa
  MMETSP1137-20121227|2481_1   1 MKCELKTVKGASFPVEVSPDTPVRKVKELAAaSEQGvADGWDADTMKLIHQGKVLDNTRDLASYSIKEGDFMVVMASKAKKPAatpaASSAAPTATPATAQPPAAAATPAAVtPAAPAATPA 122
                 67889**********************9765145554699**************************************99766334466677777777777777744444440344444454 PP

>> TIGR00531  BCCP: acetyl-CoA carboxylase, biotin carboxyl carrier protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   2.5   8.4e-06     0.012      16      75 ..      59     118 ..      45     123 .. 0.74

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 8.4e-06
   TIGR00531  16 sditelelkeeevevklkkeaaaakksvlqqaaapvvaqvpavasaavpaaavaaeaaka 75 
                  d+  +++ke+++ v++  +a   + +    +aap+  ++ a+++aa+ ++a+ ++aa+a
  MMETSP1137-20121227|2481_1  59 RDLASYSIKEGDFMVVMASKAKKPAATPAASSAAPTATPATAQPPAAAATPAAVTPAAPA 118
                 478899********9997666655555555666777777788899888888888888654 PP

>> TIGR01348  PDHac_trf_long: dihydrolipoyllysine-residue acetyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   8.2    0.0002      0.27     218     274 ..      65     119 ..      56     124 .] 0.55

  Alignments for each domain:
  == domain 1    score: 7.5 bits;  conditional E-value: 0.0002
   TIGR01348 218 kvktGdlilvlevegaapaaaeapakaeaaaaapaaeaeeaaaapaaakaeakapvd 274
                 ++k Gd ++v+ +++  paa++a  +a ++a    a+a+++aaa+++a  +++ap  
  MMETSP1137-20121227|2481_1  65 SIKEGDFMVVMASKAKKPAATPAASSAAPTA--TPATAQPPAAAATPAAVTPAAPAA 119
                 6899****99999987777764444443333..223333333333333333333322 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (124 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       147  (0.0358362); expected 82.0 (0.02)
Passed bias filter:                      114  (0.0277913); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.18u 0.16s 00:00:00.34 Elapsed: 00:00:00.27
# Mc/sec: 606.17
//
Query:       MMETSP1137-20121227|2482_1  [L=108]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (108 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        44  (0.0107265); expected 82.0 (0.02)
Passed bias filter:                       41  (0.00999512); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.13s 00:00:00.26 Elapsed: 00:00:00.27
# Mc/sec: 527.96
//
Query:       MMETSP1137-20121227|2484_1  [L=756]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.8e-08   28.6   0.0      1e-07   28.0   0.0    1.2  1  TIGR03903 TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
  ------ inclusion threshold ------
      0.038   11.3   0.0      0.072   10.4   0.0    1.4  1  TIGR03724 arch_bud32: Kae1-associated kinase Bud32
        6.9    5.2  10.5         19    3.7   7.3    1.7  1  TIGR01195 oadG_fam: sodium pump decarboxylases, gamma subunit


Domain annotation for each model (and alignments):
>> TIGR03903  TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.0   0.0   7.6e-11     1e-07      24     195 ..      66     237 ..      51     252 .. 0.79

  Alignments for each domain:
  == domain 1    score: 28.0 bits;  conditional E-value: 7.6e-11
   TIGR03903  24 RFrReialCarLshPnivaLlD....sGeaedg.llFavFeyveGrtlrevLaad....GaLpaaetgrLmlqvLDalaaahdaGvvhRDLkPqnimvsaadveshakvLDFGigaLlpgvedadeatltrttevlGsPaYaaPeqLRgepv.taksDlYaWGLivleCLtGkrvvqGa.sva 195
                    Re+++ + + h  iv+L D     G+ +d+ +l  v ++ +  tlr v  ++         ++  + + q   al   h++ + hRD+kP+ni+   +    + ++ DFG + +l   +         +  ++ s  Y aPe + g +      D+++ G i++e L G+   qG+ s++
  MMETSP1137-20121227|2484_1  66 YHNRELQMMKVMDHECIVRLRDffekAGRKKDEtYLHLVMDFLPD-TLRSVALSHhkrrKRFQVEHIRAFLWQTFRALEYIHARRICHRDIKPDNILCDPST--LQCRLCDFGCSKVLVKGQP--------NVSYICSRYYRAPELMFGATEyGVGVDVWSVGTILMELLLGHLPFQGQdSTQ 237
                 3479****************995555576655427999****995.88887443311114577788888999************************987765..5689*******98876665........567999*********99987515678****************9999962444 PP

>> TIGR03724  arch_bud32: Kae1-associated kinase Bud32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   5.2e-05     0.072     101     137 ..     140     178 ..     101     185 .. 0.84

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 5.2e-05
   TIGR03724 101 elvgklHkagivhgDlttsNiiv..kddklyliDfGLgk 137
                 +++  +H  +i+h D+ + Ni+   ++ ++ l DfG +k
  MMETSP1137-20121227|2484_1 140 RALEYIHARRICHRDIKPDNILCdpSTLQCRLCDFGCSK 178
                 677889*****************44477889*****987 PP

>> TIGR01195  oadG_fam: sodium pump decarboxylases, gamma subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   7.3     0.014        19      43      77 ..     448     483 ..     441     488 .. 0.64

  Alignments for each domain:
  == domain 1    score: 3.7 bits;  conditional E-value: 0.014
   TIGR01195  43 eveakaakek..aaaaAvaavedeedelvaaiaAAvh 77 
                 + +a+ a++k  +aaaA+ +++d++  l+aaiaAA +
  MMETSP1137-20121227|2484_1 448 KLNAELAEAKaaSAAAAKQQADDKA-TLLAAIAAAQA 483
                 4444444444225566666677777.9*******955 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (756 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       177  (0.0431497); expected 82.0 (0.02)
Passed bias filter:                      101  (0.0246221); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.54u 0.16s 00:00:00.70 Elapsed: 00:00:00.79
# Mc/sec: 1263.09
//
Query:       MMETSP1137-20121227|2485_1  [L=633]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.1e-09   33.1   0.7    7.3e-09   32.6   0.5    1.1  1  TIGR00990 3a0801s09: mitochondrial precursor proteins import receptor
    1.2e-06   26.1   0.1    2.9e-06   24.8   0.0    1.6  1  TIGR02521 type_IV_pilW: type IV pilus biogenesis/stability protein PilW
      8e-05   20.2   2.5    0.00043   17.8   0.1    2.3  2  TIGR02552 LcrH_SycD: type III secretion low calcium response chaperone LcrH/SycD
    0.00058   15.7   6.4     0.0015   14.3   4.4    1.6  1  TIGR02917 PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein
     0.0051   12.9   1.9     0.0053   12.8   0.2    1.7  1  TIGR03939 PGA_TPR_OMP: poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA


Domain annotation for each model (and alignments):
>> TIGR00990  3a0801s09: mitochondrial precursor proteins import receptor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.6   0.5   8.9e-12   7.3e-09     113     217 ..     402     516 ..     380     545 .. 0.77

  Alignments for each domain:
  == domain 1    score: 32.6 bits;  conditional E-value: 8.9e-12
   TIGR00990 113 ssvvnlseeerkkyaakl...kekGnkayrnkdfdkaielyskall.lkedPv......yysnraacynaladlekvvedttaaleldpdyvkalnrranaydqlgkyadalldl 217
                 s++++  ++   ++aa++   k +Gn+a++  ++++a  ly+ al  +  d v        +nraac+  l+ + +  ed+ a ++++p++ k   r a a +   ++ +a   +
  MMETSP1137-20121227|2485_1 402 SAQAQSEQSAEARHAARIgfkKTAGNEAFKASEYQQAAVLYTEALSlCTTDAVrdeeaiIRCNRAACFLKLGRYSQAREDAEACVAIKPEHAKGHFRLALALQAEERFGEACHAF 516
                 444444444444455544334789********************96255555422222289****************************************99999999997666 PP

>> TIGR02521  type_IV_pilW: type IV pilus biogenesis/stability protein PilW
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.8   0.0   3.5e-09   2.9e-06      27     101 ..     455     529 ..     443     531 .. 0.93

  Alignments for each domain:
  == domain 1    score: 24.8 bits;  conditional E-value: 3.5e-09
   TIGR02521  27 rekaakirvqLaleYleqgdlekAkenlekAleldpkdadanlalAlyyqqlgelekAeesfrkAltlkpnngdv 101
                 r + a ir + a+ +l+ g + +A+e+ e  ++++p+ a+ +  lAl++q + + ++A ++f++ ltl+p n d+
  MMETSP1137-20121227|2485_1 455 RDEEAIIRCNRAACFLKLGRYSQAREDAEACVAIKPEHAKGHFRLALALQAEERFGEACHAFNRVLTLEPRNKDA 529
                 5566889****************************************************************9986 PP

>> TIGR02552  LcrH_SycD: type III secretion low calcium response chaperone LcrH/SycD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.1   0.7   0.00013       0.1      64     119 ..     431     492 ..     421     496 .. 0.77
   2 !   17.8   0.1   5.3e-07   0.00043      30      87 ..     471     528 ..     465     545 .. 0.70

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 0.00013
   TIGR02552  64 alkeyeeAiaaYalaaal......dlddprpvyhaaecllalgekeeAlkaLklaieiaeek 119
                 +++ey++A+  Y+ a++l      + ++++    +a c+l+lg++ +A+++ +++++i+ e 
  MMETSP1137-20121227|2485_1 431 KASEYQQAAVLYTEALSLcttdavRDEEAIIRCNRAACFLKLGRYSQAREDAEACVAIKPEH 492
                 56899999999998887622211123445667889********************9998876 PP

  == domain 2    score: 17.8 bits;  conditional E-value: 5.3e-07
   TIGR02552  30 qqgkyeeAeklFqlLaaldpteakywlgLaaclqalkeyeeAiaaYalaaaldlddpr 87 
                 + g+y++A++  ++ +a+ p  ak +++La++lqa +++ eA +a+ + ++l++ + +
  MMETSP1137-20121227|2485_1 471 KLGRYSQAREDAEACVAIKPEHAKGHFRLALALQAEERFGEACHAFNRVLTLEPRNKD 528
                 4577777777777777777777777777777777777777777777777777766654 PP

>> TIGR02917  PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   4.4   1.8e-06    0.0015     670     805 ..     385     528 ..     371     554 .. 0.63

  Alignments for each domain:
  == domain 1    score: 14.3 bits;  conditional E-value: 1.8e-06
   TIGR02917 670 eaqlllaqLlleekrleeAlkllkelekqkpkaalgf.eleGdlalrqkdykaAiqaykkalkrapss.....qtvikLaea..llasgntaeAaktleawLkehpkdavlrtalAelylaekdedkAakhYqtvvkkapdnav 805
                 e q++la +  +++   +A   +++  +++  a  gf +  G+ a++  +y++A+  y++al++  ++     +++i+ ++a   l+ g+ ++A + +ea    +p++a+  + lA  + ae++  +A  +++ v+ ++p n  
  MMETSP1137-20121227|2485_1 385 ERQRVLALMREQAEHAASAQAQSEQSAEARHAARIGFkKTAGNEAFKASEYQQAAVLYTEALSLCTTDavrdeEAIIRCNRAacFLKLGRYSQAREDAEACVAIKPEHAKGHFRLALALQAEERFGEACHAFNRVLTLEPRNKD 528
                 556666666666666666655555544444444444414567777777777777777777777655542222245666555511455677777777777777777777777777777777777777777777777777776654 PP

>> TIGR03939  PGA_TPR_OMP: poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.8   0.2   6.4e-06    0.0053      79     163 ..     485     574 ..     467     592 .. 0.73

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 6.4e-06
   TIGR03939  79 y.slvglparelealAkAaRnekqwdkAlelyrkllqrdPknpdlllGlaltladagkdee....AlkalkelkerfpsdaerlealaYv 163
                 +  +++  a++   lA A+  e+++ +A   ++++l  +P+n+d+ +Gl ++++ a++ ++       al +l+ + ++ a+r+ a+a++
  MMETSP1137-20121227|2485_1 485 CvAIKPEHAKGHFRLALALQAEERFGEACHAFNRVLTLEPRNKDATSGLRMAEVQAERXAQdgssMTHALPQLRRAAGPRASRFDASAWL 574
                 5555555566666789999999**************************999888777655411113455666666677777777777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (633 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       135  (0.0329108); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.53u 0.16s 00:00:00.69 Elapsed: 00:00:01.06
# Mc/sec: 788.20
//
Query:       MMETSP1137-20121227|2486_1  [L=257]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.73    7.7   6.1       0.17    9.7   1.0    2.0  2  TIGR03750 conj_TIGR03750: conjugative transfer region protein, TIGR03750 family


Domain annotation for each model (and alignments):
>> TIGR03750  conj_TIGR03750: conjugative transfer region protein, TIGR03750 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.1     0.056   2.3e+02      25      42 ..      68      85 ..      43      96 .. 0.52
   2 ?    9.7   1.0   4.2e-05      0.17      12      72 ..     103     164 ..     100     176 .. 0.66

  Alignments for each domain:
  == domain 1    score: -0.4 bits;  conditional E-value: 0.056
   TIGR03750 25 vaavvglvlglvlgllla 42
                +++++gl l +v+ + l+
  MMETSP1137-20121227|2486_1 68 TTLIMGLELLTVVNATLC 85
                222222222222222222 PP

  == domain 2    score: 9.7 bits;  conditional E-value: 4.2e-05
   TIGR03750  12 pvvfrGltadElvvaavvglvlglvlglllalllg.swaliptgallgvilvvliggkllar 72 
                  +v + +t   + +a+++g ++ ++l++ll+  ++ sw l+  + +l++    +i + +++ 
  MMETSP1137-20121227|2486_1 103 TAVTGMMTHYKFTLACFTGGLVCFMLSALLYGWMQfSWPLALPMTVLLIYFLYTILKYFVRI 164
                 56666689999999999999999999988875555477665555444444444444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (257 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       169  (0.0411994); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.21u 0.13s 00:00:00.34 Elapsed: 00:00:00.36
# Mc/sec: 942.26
//
Query:       MMETSP1137-20121227|2487_1  [L=351]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (351 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        44  (0.0107265); expected 82.0 (0.02)
Passed bias filter:                       40  (0.00975134); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.15s 00:00:00.39 Elapsed: 00:00:00.45
# Mc/sec: 1029.51
//
Query:       MMETSP1137-20121227|2488_1  [L=534]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (534 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        81  (0.0197465); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.18s 00:00:00.53 Elapsed: 00:00:00.62
# Mc/sec: 1136.81
//
Query:       MMETSP1137-20121227|2489_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        23  (0.00560702); expected 82.0 (0.02)
Passed bias filter:                       22  (0.00536324); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.13s 00:00:00.25 Elapsed: 00:00:00.25
# Mc/sec: 279.82
//
Query:       MMETSP1137-20121227|2490_1  [L=32]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (32 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        36  (0.00877621); expected 82.0 (0.02)
Passed bias filter:                       35  (0.00853242); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.15s 00:00:00.24 Elapsed: 00:00:00.25
# Mc/sec: 168.95
//
Query:       MMETSP1137-20121227|2491_1  [L=730]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (730 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        47  (0.0114578); expected 82.0 (0.02)
Passed bias filter:                       44  (0.0107265); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.14s 00:00:00.55 Elapsed: 00:00:00.83
# Mc/sec: 1160.87
//
Query:       MMETSP1137-20121227|2492_1  [L=561]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   5.3e-150  498.2   0.0   6.6e-150  497.9   0.0    1.0  1  TIGR00464 gltX_bact: glutamate--tRNA ligase
    1.4e-65  219.2   0.0    2.1e-65  218.7   0.0    1.3  1  TIGR03838 queuosine_YadB: glutamyl-queuosine tRNA(Asp) synthetase
    4.1e-32  109.2   0.0    6.2e-32  108.7   0.0    1.2  1  TIGR00463 gltX_arch: glutamine--tRNA ligase
    1.4e-13   48.4   0.0    3.8e-13   47.0   0.0    1.7  1  TIGR00440 glnS: glutamine--tRNA ligase


Domain annotation for each model (and alignments):
>> TIGR00464  gltX_bact: glutamate--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  497.9   0.0  6.4e-153  6.6e-150       2     456 ..      63     534 ..      62     545 .. 0.92

  Alignments for each domain:
  == domain 1    score: 497.9 bits;  conditional E-value: 6.4e-153
   TIGR00464   2 vrvRfAPSPTGylHiGglRtAlfnyllAkntngeFllRiEDTDkeRnieeaeeeileilkwlgiewde........gpylQskrld..iykklikeLleegkAYrCycskEeLeklreeqkakketprYdrkcrnleeeeiekklakgekpvvRlkipeeaevsfnDlvrgeiklense.lddlvilksdglptYnlavvvDDllmkithviRgedhisntpkqillykAlgakipkfaHlplildeegkKLSKRdgatsieqfkeqGyLpeAliNylallGwspddkkEvFsleelieiFslervskspalfdlkkLkwlNkeylkelkdeellellkphlkkkvklstleeeq.lkellkllkerlktlkelaeeiklffedk.kevdedakkklekkevkevleklkkklealeelt...aeevesaikevaeelelkkkkllkplRvaltgkeqgpelaeilellg..k 456
                 +r+RfAPSPTG lH+Gg+RtAlf++l Ak+ +g+Fl+R+EDTD+ R+++  e+++l+ l+wlg+  de        gpy Qs+r++   y+ l+++Lle+g+AYrC+c++EeLe++r ++++  e+p+Yd+++r+ + ee+++ l+ ge+++vR+k+p+ ++v+  Dlvrg ++++ ++ ++d+++l+s g+p+Yn++v+vDD+ m+i+ viR+e+h++nt +q l+++Al++++p++aHl+l+l+e++ KLSKR+gats++qf+++G+Lp+A+iNyl+llGw+ ++++E+++++eli+ Fsl+r++kspa+fd+kkL+w+N ++l++l+++e ++l+  hl++ v + t +e+  ++  + +++e+++ ++++   ++  ++ + +e+ e+   + + kev+++l  ++k+ e     t   a e ++ +k++ ++l+ k+k+l++plR+a tg++ gp++a  l++l   k
  MMETSP1137-20121227|2492_1  63 TRTRFAPSPTGSLHVGGARTALFSWLKAKQDGGKFLVRVEDTDTARSTRASEQSVLQDLNWLGLIQDEgpeaggdkGPYRQSERMEsgLYQGLAQKLLESGHAYRCFCTAEELEAKRLAAEEAGENPKYDGTWRDADPEEVQRRLDAGEPFTVRFKVPKGKTVTIADLVRGDVSWDVEAtIGDFILLRSGGMPVYNFCVAVDDAMMEISTVIRAEEHLTNTVRQALILEALDYDLPEYAHLSLVLGEDRSKLSKRHGATSVDQFRREGFLPQAMINYLCLLGWNDSTDQEIYTVDELIKAFSLDRITKSPAVFDMKKLRWVNGQHLRALDEAERRTLIGAHLHE-VGIATEAESPfVEAASLMVAEKVELVNDASALVRDALAYPlAEMPEKDISDANFKEVAQALIDAHKAGEVPAAGTadfATEWKECVKDLGKKLGKKGKQLFMPLRIATTGRSAGPDIAXQLQVLAlaK 534
                 69**********************************************************************************98446**************************************************************************************9875166*****************************************************************************************************************************************************************8.688777777669999999**************99888765156667766666667777777776666554444442257899************************************9999876333 PP

>> TIGR03838  queuosine_YadB: glutamyl-queuosine tRNA(Asp) synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  218.7   0.0     2e-68   2.1e-65       2     252 ..      64     336 ..      63     360 .. 0.89

  Alignments for each domain:
  == domain 1    score: 218.7 bits;  conditional E-value: 2e-68
   TIGR03838   2 vGRfAPsPtGpLHlGslvaalasyldaraaggkwlvRieDlDtpRevpgaaeeilatLealglewDeevv........yQserke..lYqaalerlkaaglaYpCactRkeiaaa.....ereeelvypgtcregl......kekeareaalrlrveeee.vafeDrlqgeleqdlaaevgdfvlrRadglfaYqLavvvDDaeqgvtevvRGaDLlestarQilLqrlLglptpeylHlPlvlnadGekLsKqngakaldesepeaalaaal 252
                 + RfAPsPtG LH+G +++al s+l+a++ ggk+lvR+eD Dt+R ++  ++++l++L++lgl  De +          Qser e  lYq   ++l ++g+aY+C ct +e++a+     e+ e+  y+gt r+        +  + ++ ++r++v++ + v++ D + g+++ d++a++gdf+l R+ g+  Y++ v vDDa ++++ v+R ++ l++t+rQ+l+ ++L+++ pey+Hl lvl +d +kLsK++ga+++d+ + e  l +a+
  MMETSP1137-20121227|2492_1  64 RTRFAPSPTGSLHVGGARTALFSWLKAKQDGGKFLVRVEDTDTARSTRASEQSVLQDLNWLGLIQDEGPEaggdkgpyRQSERMEsgLYQGLAQKLLESGHAYRCFCTAEELEAKrlaaeEAGENPKYDGTWRDADpeevqrRLDAGEPFTVRFKVPKGKtVTIADLVRGDVSWDVEATIGDFILLRSGGMPVYNFCVAVDDAMMEISTVIRAEEHLTNTVRQALILEALDYDLPEYAHLSLVLGEDRSKLSKRHGATSVDQFRREGFLPQAM 336
                 78*****************************************************************999999999999***976337************************99999998888999*******9665666544455667899****9875489**************************************************************************************************998776665554 PP

>> TIGR00463  gltX_arch: glutamine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  108.7   0.0     6e-35   6.2e-32      80     333 ..      49     317 ..      30     333 .. 0.81

  Alignments for each domain:
  == domain 1    score: 108.7 bits;  conditional E-value: 6e-35
   TIGR00463  80 akklieLedakkgevvlrfaPnPsGplhiGharaailnqefakkYeGklilrldDtdPrrekeeaydsileDldlLGvkvDev.........vyqsdriel..yYdYarkliedGkaYvcdcsteefrelrnkGvac...krrdrsveenLevw..eemlegeeeeekvvvrvktDlkhknpairDfvifriektehprtGdkykv....YPlldfsvaidDhllGvthvlrgkdyidnerkqeYiykylglelpevkhygrlkiedvraLsts 333
                 +++ + + da k    +rfaP P+G lh+G ar+a+     ak+ +Gk+++r++Dtd  r +    +s+l+Dl++LG+ +De            qs+r+e   y   a+kl+e G+aY c+c+ ee+   r   +++   ++ d + ++       ee+      +e  +vr k+  k k  +i D v   +  +    +Gd   +     P+++f+va+dD+++ +  v+r+ +++ n+ +q+ i + l + lpe  h  ++  ed  +Ls +
  MMETSP1137-20121227|2492_1  49 RRTAKVIMDAAKKPTRTRFAPSPTGSLHVGGARTALFSWLKAKQDGGKFLVRVEDTDTARSTRASEQSVLQDLNWLGLIQDEGpeaggdkgpYRQSERMESglYQGLAQKLLESGHAYRCFCTAEELEAKRLAAEEAgenPKYDGTWRD----AdpEEVQRRLDAGEPFTVRFKVP-KGKTVTIADLVRGDVSWDVEATIGDFILLrsggMPVYNFCVAVDDAMMEISTVIRAEEHLTNTVRQALILEALDYDLPEYAHLSLVLGEDRSKLSKR 317
                 4444445666668889**************************************************************99875222333332569****95437779********************9999877765111344555555....2235555555556679*****96.8899999999999999999999998665534447************************************************999988887777765 PP

>> TIGR00440  glnS: glutamine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.0   0.0   3.7e-16   3.8e-13       2     125 ..      64     197 ..      63     338 .. 0.68

  Alignments for each domain:
  == domain 1    score: 47.0 bits;  conditional E-value: 3.7e-16
   TIGR00440   2 rtrfppepnGylhiGhaksillnfGlakeykGtcnlrfddtnpvkedveyvesikrdvewlGfkwegkv.........ryssdyfdely.alavelikkGlayvdeltaeeireyrGiledpGkaskyrdrsie 125
                 rtrf p p G lh+G a++ l  +  ak+  G+  +r +dt+  +      +s+ +d++wlG+  +  +         r s      ly +la++l++ G ay + +taee+   r   e+ G++ ky     +
  MMETSP1137-20121227|2492_1  64 RTRFAPSPTGSLHVGGARTALFSWLKAKQDGGKFLVRVEDTDTARSTRASEQSVLQDLNWLGLIQDEGPeaggdkgpyRQSERMESGLYqGLAQKLLESGHAYRCFCTAEELEAKRLAAEEAGENPKYDGTWRD 197
                 8*************************************************************976544301111111133344445688459*****************************9977777433333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (561 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       110  (0.0268162); expected 82.0 (0.02)
Passed bias filter:                       96  (0.0234032); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.46u 0.18s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 1898.61
//
Query:       MMETSP1137-20121227|2493_1  [L=168]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0062   14.7   1.7      0.011   13.8   1.2    1.4  1  TIGR02844 spore_III_D: sporulation transcriptional regulator SpoIIID


Domain annotation for each model (and alignments):
>> TIGR02844  spore_III_D: sporulation transcriptional regulator SpoIIID
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   1.2   2.8e-06     0.011      34      75 ..      82     124 ..      80     129 .. 0.88

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 2.8e-06
   TIGR02844  34 stvhkdlterlPeinpelaeevkevldknkaerhirG.Gkatk 75 
                  tv +d  er  ei  + a+++ e+  ++ka+r  rG  ka k
  MMETSP1137-20121227|2493_1  82 NTVDRDQKERQREIAADRAARIAEIXANKKAKRKTRGrSKASK 124
                 599*********************************9345665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (168 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       367  (0.0894686); expected 82.0 (0.02)
Passed bias filter:                      144  (0.0351048); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.20u 0.17s 00:00:00.37 Elapsed: 00:00:00.40
# Mc/sec: 554.35
//
Query:       MMETSP1137-20121227|2494_1  [L=111]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (111 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        33  (0.00804486); expected 82.0 (0.02)
Passed bias filter:                       28  (0.00682594); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.15s 00:00:00.30 Elapsed: 00:00:00.25
# Mc/sec: 586.03
//
Query:       MMETSP1137-20121227|2495_1  [L=969]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (969 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        82  (0.0199902); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.57u 0.17s 00:00:00.74 Elapsed: 00:00:00.69
# Mc/sec: 1853.59
//
Query:       MMETSP1137-20121227|2497_1  [L=433]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (433 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.16s 00:00:00.46 Elapsed: 00:00:00.32
# Mc/sec: 1785.98
//
Query:       MMETSP1137-20121227|2499_1  [L=213]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0035   15.5   3.3     0.0035   15.5   2.3    2.4  2  TIGR03142 cytochro_ccmI: cytochrome c-type biogenesis protein CcmI


Domain annotation for each model (and alignments):
>> TIGR03142  cytochro_ccmI: cytochrome c-type biogenesis protein CcmI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   2.3   8.4e-07    0.0035      44      92 ..      67     115 ..      48     126 .. 0.87
   2 ?   -0.2  11.1     0.061   2.5e+02      46      91 ..     149     194 ..     149     206 .. 0.90

  Alignments for each domain:
  == domain 1    score: 15.5 bits;  conditional E-value: 8.4e-07
   TIGR03142  44 rLaELerdeaeglldeaeaeaakaElerrLLadakeaeeeaasqakrss 92 
                 ++a+L++ ++e+ l+ea+ e+  aE++r+LL++ ++++++++s  kr++
  MMETSP1137-20121227|2499_1  67 KVAQLQEALEEQGLNEADIEKRVAEMRRKLLDKLPKEPTKSSSDVKRTG 115
                 6799**********************************99999555544 PP

  == domain 2    score: -0.2 bits;  conditional E-value: 0.061
   TIGR03142  46 aELerdeaeglldeaeaeaakaElerrLLadakeaeeeaasqakrs 91 
                 +EL++ ++++ l+e++ae+a++E   +LL++ ke+ee ++++++r+
  MMETSP1137-20121227|2499_1 149 RELQEKKRQERLAEKAAEEAEKEELLSLLEKEKEREERRRRKEERR 194
                 59**********************************9999954444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (213 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       371  (0.0904437); expected 82.0 (0.02)
Passed bias filter:                      111  (0.02706); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.27u 0.19s 00:00:00.46 Elapsed: 00:00:00.44
# Mc/sec: 638.95
//
Query:       MMETSP1137-20121227|2500_1  [L=451]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.014   13.2   6.2          2    6.3   0.4    3.7  4  TIGR02276 beta_rpt_yvtn: 40-residue YVTN family beta-propeller repeat


Domain annotation for each model (and alignments):
>> TIGR02276  beta_rpt_yvtn: 40-residue YVTN family beta-propeller repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0      0.49     2e+03       1       9 [.      75      83 ..      75      86 .. 0.81
   2 ?    6.3   0.4    0.0005         2       4      18 ..     281     295 ..     279     296 .. 0.91
   3 ?    2.3   0.0    0.0091        37       1      16 [.     343     358 ..     343     362 .. 0.93
   4 ?    5.6   0.1   0.00082       3.4       8      22 ..     397     413 ..     392     420 .. 0.79

  Alignments for each domain:
  == domain 1    score: -3.3 bits;  conditional E-value: 0.49
   TIGR02276  1 PdGtkvYVt 9 
                P+++++Y  
  MMETSP1137-20121227|2500_1 75 PSDASIYTY 83
                99999*976 PP

  == domain 2    score: 6.3 bits;  conditional E-value: 0.0005
   TIGR02276   4 tkvYVtNsgSnsVsV 18 
                 ++ YV+N+ S sVsV
  MMETSP1137-20121227|2500_1 281 KTAYVVNELSSSVSV 295
                 578***********9 PP

  == domain 3    score: 2.3 bits;  conditional E-value: 0.0091
   TIGR02276   1 PdGtkvYVtNsgSnsV 16 
                 P+G+ v V N+g +s+
  MMETSP1137-20121227|2500_1 343 PSGAFVLVSNRGHDSI 358
                 9***********9997 PP

  == domain 4    score: 5.6 bits;  conditional E-value: 0.00082
   TIGR02276   8 VtNsgSnsVsV..IDta 22 
                 V+N++S+s++V  +D a
  MMETSP1137-20121227|2500_1 397 VANQDSDSLTVfhLDKA 413
                 9********99445555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (451 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        59  (0.0143832); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.15s 00:00:00.48 Elapsed: 00:00:00.37
# Mc/sec: 1608.84
//
Query:       MMETSP1137-20121227|2501_1  [L=439]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   6.3e-102  339.9   3.3    5.7e-58  194.5   0.0    2.1  2  TIGR02965 xanthine_xdhB: xanthine dehydrogenase, molybdopterin binding subunit
    1.1e-86  289.3   0.0    1.4e-86  289.0   0.0    1.0  1  TIGR02969 mam_aldehyde_ox: aldehyde oxidase
    1.7e-21   73.4   0.3    4.9e-21   71.9   0.2    1.6  1  TIGR03313 Se_sel_red_Mo: probable selenate reductase, molybdenum-binding subunit
    1.9e-19   67.4   0.4    8.1e-19   65.3   0.3    1.7  1  TIGR03196 pucD: xanthine dehydrogenase D subunit
    6.8e-18   62.3   0.4    5.7e-10   36.1   0.0    2.0  2  TIGR03194 4hydrxCoA_A: 4-hydroxybenzoyl-CoA reductase, alpha subunit
    5.2e-17   59.1   0.8    7.4e-17   58.6   0.5    1.1  1  TIGR02416 CO_dehy_Mo_lg: carbon-monoxide dehydrogenase, large subunit
    6.9e-11   38.7   0.5    3.6e-05   19.8   0.0    2.0  2  TIGR03311 Se_dep_Molyb_1: selenium-dependent molybdenum hydroxylase 1


Domain annotation for each model (and alignments):
>> TIGR02965  xanthine_xdhB: xanthine dehydrogenase, molybdopterin binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  145.3   1.0   7.4e-46   4.4e-43     430     533 ..       2     105 ..       1     120 [. 0.96
   2 !  194.5   0.0   9.7e-61   5.7e-58     572     755 ..     120     332 ..     111     334 .. 0.80

  Alignments for each domain:
  == domain 1    score: 145.3 bits;  conditional E-value: 7.4e-46
   TIGR02965 430 altPvkfGisftvthlnqaGalvhvytdGsillnhGGtemGqGlntkvaqvvaeefqvdldrvkitatdtdkvpntsataassGadlnGkaaqdaarqikerlv 533
                 a+ P k+Gi ft++++nq Galvh+ytdG++l+ hGGtemGqGl+tkvaqv a++f++ l +v+i+ t tdkv+nt +taas  +dl G+a+ da+rqi  rl 
  MMETSP1137-20121227|2501_1   2 AIVPTKYGINFTAKFMNQGGALVHLYTDGTVLVTHGGTEMGQGLHTKVAQVAAKAFGLPLSKVHIAETATDKVANTQPTAASMSTDLYGMATLDACRQILARLE 105
                 899**************************************************************************************************995 PP

  == domain 2    score: 194.5 bits;  conditional E-value: 9.7e-61
   TIGR02965 572 larvqlssaGfyk..tPk..ihwd...........rakgrGrpfyyfayGaavsevvvdtltGeykvlradilhdvGkslnpaidiGqveGafvqGmGWltteelvw........dekGrlrthaPstykiPavsdrPkdfnvrlleaaenaedtihrskavGePPlllglsvlsalkdavasvadykvlPk.......ldaPatpervlkave 755
                 +  ++ls++Gfy+  t +    wd            +++rG+pf yf+ G   +ev vd+ltG+++v r+d+l dvG+++npaidiGq+eGaf qGmGW+tteel+w        +++Grl+t++P +ykiP  +d+P++fnv l+  + ++  t+h skavGePP+ lg +v++a+kda+a+    +  P+       l +Pat+er+ +a+ 
  MMETSP1137-20121227|2501_1 120 AXXIDLSAHGFYAvdTKRcgYDWDaappplpdgtpDNAARGNPFNYFTQGVGFAEVEVDVLTGDHEVRRVDLLVDVGSAINPAIDIGQIEGAFTQGMGWVTTEELIWgdghhkwvQPAGRLHTQGPGAYKIPSFNDTPRKFNVSLMS-GVDNPFTVHSSKAVGEPPFFLGCTVFFAIKDAIAAARAEHLPPDaaatyfpLFSPATSERIRMACA 332
                 566778888888622333114455222222222223578******************************************************************9943333322347*****************************.666678*****************************9988887752222222667*******99975 PP

>> TIGR02969  mam_aldehyde_ox: aldehyde oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  289.0   0.0   2.3e-89   1.4e-86    1000    1313 ..       2     337 ..       1     349 [. 0.88

  Alignments for each domain:
  == domain 1    score: 289.0 bits;  conditional E-value: 2.3e-89
   TIGR02969 1000 aviplkfpvglgsvaagqaaalvhiyldgsvlvthggiemgqgvhtkmiqvvsrelkmpmsnvhlrgtstetvpntnasggsvvadlnglavkdacqtllkrlepiisknpkgtwkdwaqtafdksislsavgyfr......gyesninw.........ekgeghpfeyfvygaacseveidcltgdhknirtdivmdvgysinpaldigqvegafiqgmglytieelsy........spqgilysrgpnqykipaicdiptelhiallppseksntlysskglgesgvflgcsvffairdavsaarqer....glsgplklsspltpekirmacedkftk 1313
                  a++p k+ + ++++ + q  alvh+y dg+vlvthgg emgqg+htk+ qv ++ + +p+s+vh+  t+t+ v nt+ +  s+ +dl g+a  dac+ +l rlepi +k p+        +a    i+lsa g++       gy+ +            +   g+pf+yf  g   +eve+d+ltgdh   r d+++dvg +inpa+digq+egaf qgmg  t eel +         p g l+++gp  ykip+  d p +++++l+   ++  t++ssk +ge   flgc+vffai+da++aar e        + + l sp t e+irmac d+f+ 
  MMETSP1137-20121227|2501_1    2 AIVPTKYGINFTAKFMNQGGALVHLYTDGTVLVTHGGTEMGQGLHTKVAQVAAKAFGLPLSKVHIAETATDKVANTQPTAASMSTDLYGMATLDACRQILARLEPIRKKMPDAP-----LAAVAXXIDLSAHGFYAvdtkrcGYDWDAAPpplpdgtpdNAARGNPFNYFTQGVGFAEVEVDVLTGDHEVRRVDLLVDVGSAINPAIDIGQIEGAFTQGMGWVTTEELIWgdghhkwvQPAGRLHTQGPGAYKIPSFNDTPRKFNVSLMSGVDNPFTVHSSKAVGEPPFFLGCTVFFAIKDAIAAARAEHlppdAAATYFPLFSPATSERIRMACADRFAA 337 
                  89*************************************************************************************************************875.....467778899999998852222235555442111111112135689***************************************************************97533333333699******************************************************************99744335667789******************75 PP

>> TIGR03313  Se_sel_red_Mo: probable selenate reductase, molybdenum-binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.9   0.2   8.4e-24   4.9e-21     658     913 ..      17     282 ..       1     311 [. 0.78

  Alignments for each domain:
  == domain 1    score: 71.9 bits;  conditional E-value: 8.4e-24
   TIGR03313 658 idqancmiklesdgtfivhsggadigtgldtvvakltaevlrcplddvhvisgdtdhalfdkgayassgtcfsgnaakkaaenlrekilfhgaemlgepvadv....elaapglvrgkkgevsladiahkaetgtgfgslvgtgsyitselafpyganfaevavntrtgeirldkfyalldcgtpvnpelalgqiygatlraighslteeivyddegi....p....ltrdlksygapkigdiprdfravlvps.ddkvgpygaksise 913
                 ++q  + ++l +dgt +v  gg+++g gl t va+++a+ +  pl++vh+    td+    + + as  t + g a+  a+ ++  ++     +m   p+a v    +l+a g+    +    +   a       g     + g    +   f  g  faev v++ tg+  + +   l+d+g+ +np + +gqi ga  + +g   tee+++ d  +    p     t+   +y  p   d pr+f+  l+   d++   + +k++ e
  MMETSP1137-20121227|2501_1  17 MNQGGALVHLYTDGTVLVTHGGTEMGQGLHTKVAQVAAKAFGLPLSKVHIAETATDKVANTQPTAASMSTDLYGMATLDACRQILARLEPIRKKMPDAPLAAVaxxiDLSAHGFYAVDTKRCGYDWDAAPPPLPDGTPDNAARG---NPFNYFTQGVGFAEVEVDVLTGDHEVRRVDLLVDVGSAINPAIDIGQIEGAFTQGMGWVTTEELIWGDGHHkwvqPagrlHTQGPGAYKIPSFNDTPRKFNVSLMSGvDNPFTVHSSKAVGE 282
                 6789999*************************************************************************9999988888888887777665422227888888777777777765555555555555544444...34446899*********************************************************9765441222311113555567888999*******9988765155666666666655 PP

>> TIGR03196  pucD: xanthine dehydrogenase D subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.3   0.3   1.4e-21   8.1e-19     459     738 ..      20     301 ..       2     308 .. 0.79

  Alignments for each domain:
  == domain 1    score: 65.3 bits;  conditional E-value: 1.4e-21
   TIGR03196 459 ararlelaeeGtvkvrlssafeevGqGilaiieqivreelGv..edvvlviadtakvs.aGsssasrqtsmvggavrrlkkavldrlkkrvartaGlpaevveasartlivnaaelvrvekalvvtlkelledGpleeetafhdrrtsaldavGqgdghvlyaaaaaavvvevdldlGlvklvdmelaidaGtvlsplalrGqveGGaaqalGlalmeelktvdGvv..v..aetld.....dyllptikdvpdldlvavedl..qkddvyGvkGvGeig...tiaitpaivkavrv 738
                  +a ++l  +Gtv v+   +  e+GqG+ + + q++ + +G    +v ++ + t kv+ +  ++as  t + g a   +++ +l+rl     ++       + a a  +  +a ++  v  + +  +   ++  pl +         ++ d   +g++   ++ +   ++vevd+++G+  +  ++l +d+G+ ++p    Gq+eG  +q++G+   eel   dG    v  a  l+      y +p+ +d p    v++      +  v+  k vGe +    +++  ai  a+  
  MMETSP1137-20121227|2501_1  20 GGALVHLYTDGTVLVT--HGGTEMGQGLHTKVAQVAAKAFGLplSKVHIAETATDKVAnTQPTAASMSTDLYGMATLDACRQILARLEPIRKKMPD---APLAAVAXXIDLSAHGFYAV-DTKRCGYDWDAAPPPLPDG--------TP-DNAARGNPFNYFTQGVGFAEVEVDVLTGDHEVRRVDLLVDVGSAINPAIDIGQIEGAFTQGMGWVTTEELIWGDGHHkwVqpAGRLHtqgpgAYKIPSFNDTPRKFNVSLMSGvdNPFTVHSSKAVGEPPfflGCTVFFAIKDAIAA 301
                 37888999***77665..6889*******************98899999999999999788999***********************987666555...45667778888899999554.5668999999999999865........45.666678********************************************************************96422412445663333369*********86666665541134578889999998733335555566555554 PP

>> TIGR03194  4hydrxCoA_A: 4-hydroxybenzoyl-CoA reductase, alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.4   0.1   3.2e-09   1.9e-06     447     533 ..      22     108 ..       6     131 .. 0.87
   2 !   36.1   0.0   9.7e-13   5.7e-10     605     712 ..     166     284 ..     143     311 .. 0.69

  Alignments for each domain:
  == domain 1    score: 24.4 bits;  conditional E-value: 3.2e-09
   TIGR03194 447 valkvdfdggitlltGaadiGqGsstivaqvvaevlGvrlerlrviaadsaltPkdnGayssrvtfmvGnaaidaaeelkkvlvaaa 533
                 + +++  dg++ +  G +++GqG +t vaqv+a+++G+ l+++++  + ++     + + +s  t + G a+ da++++ + l  + 
  MMETSP1137-20121227|2501_1  22 ALVHLYTDGTVLVTHGGTEMGQGLHTKVAQVAAKAFGLPLSKVHIAETATDKVANTQPTAASMSTDLYGMATLDACRQILARLEPIR 108
                 4567889*****************************************99999999999*****************99987775555 PP

  == domain 2    score: 36.1 bits;  conditional E-value: 9.7e-13
   TIGR03194 605 fsyaaqvvevsvdeetGkvtvekvwaaldcGkainPlaveGqvqGavymGmGqalseetvyddGrikaaell.........dyrlptivesP.dieveivesld.PnGPfGakeaseGa 712
                 f+ +   +ev vd  tG   v++v   +d+G ainP    Gq++Ga   GmG   +ee ++ dG++k ++ +          y++p+  ++P + +v+++  +d P+  +  k ++e +
  MMETSP1137-20121227|2501_1 166 FTQGVGFAEVEVDVLTGDHEVRRVDLLVDVGSAINPAIDIGQIEGAFTQGMGWVTTEELIWGDGHHKWVQPAgrlhtqgpgAYKIPSFNDTPrKFNVSLMSGVDnPFTVHSSKAVGEPP 284
                 34555668********************************************************9987653211112222246666666666335666666554355556666666654 PP

>> TIGR02416  CO_dehy_Mo_lg: carbon-monoxide dehydrogenase, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.6   0.5   1.3e-19   7.4e-17     479     758 ..      23     307 ..      14     315 .. 0.77

  Alignments for each domain:
  == domain 1    score: 58.6 bits;  conditional E-value: 1.3e-19
   TIGR02416 479 eirihptgsaiarlgtksqgqghettyaqiiatelgipaedidveegdtdtapyglgtygsrstpvagaaialaarkikakakiiaahmlevseadlewdvdrfkvkgdpskfktladialraynalpeglepgleavnyydpsnltypfgaylcvvdidvdtgvvkvrrfyalddcgtrinpmiiegqihggltegiavalgqeiafde........qgnvlgaslmdyllptavetp.kfetdy.tvtpsphhpigakgvgesahvgsvpavsnavvdalaflgvrhl 758
                  + ++  g++++  g +  gqg +t  aq+ a+ +g+p  ++++ e  td+      t  s st   g a+  a r+i a+ + i  +m ++  a +   +d    +g     +  +   +    a+p+  ++  +     +p n  +  g+ +  v++dv tg   vrr   l d g+ inp i  gqi g +t+g++   ++e+ + +         g +  +    y +p+  +tp kf+    +    p     +k vge +   +   v  a+ da+a   ++hl
  MMETSP1137-20121227|2501_1  23 LVHLYTDGTVLVTHGGTEMGQGLHTKVAQVAAKAFGLPLSKVHIAETATDKVANTQPTAASMSTDLYGMATLDACRQILARLEPIRKKMPDAPLAAVAXXIDL-SAHGFY--AVDTKRCGYDWDAAPPPLPDGTPDNAARGNPFNY-FTQGVGFAEVEVDVLTGDHEVRRVDLLVDVGSAINPAIDIGQIEGAFTQGMGWVTTEELIWGDghhkwvqpAGRLHTQGPGAYKIPSFNDTPrKFNVSLmSGVDNPFTVHSSKAVGEPPFFLGCT-VFFAIKDAIAAARAEHL 307
                 567788999**********************************************************************************999999877763.344443..3444555555444566655666677777888885.789*************************************************9999998875411111111233334444455566666655334444312345566666777788877766654.44689999999988886 PP

>> TIGR03311  Se_dep_Molyb_1: selenium-dependent molybdenum hydroxylase 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.1   3.8e-07   0.00022     602     678 ..      28     104 ..      17     113 .. 0.91
   2 !   19.8   0.0   6.1e-08   3.6e-05     714     769 ..     169     225 ..     152     240 .. 0.83

  Alignments for each domain:
  == domain 1    score: 17.2 bits;  conditional E-value: 3.8e-07
   TIGR03311 602 edGkvhirtsaaciGqGletvltqivcetlgllpevivlelpdtkltpdsGtttasrqslftGeatrraaaklkeal 678
                 +dG v +    + +GqGl+t + q+++++ gl+  ++ +  + t    ++  t+as  + + G at  a+ ++  +l
  MMETSP1137-20121227|2501_1  28 TDGTVLVTHGGTEMGQGLHTKVAQVAAKAFGLPLSKVHIAETATDKVANTQPTAASMSTDLYGMATLDACRQILARL 104
                 6999**********************************999*************************99998876665 PP

  == domain 2    score: 19.8 bits;  conditional E-value: 6.1e-08
   TIGR03311 714 aygya.tqvvilddkGkvekvvaaydvGrainplnleGqieGGivmGlGyaltedfp 769
                 + g+a  +v +l  +  v +v    dvG ainp    GqieG    G+G+  te+  
  MMETSP1137-20121227|2501_1 169 GVGFAeVEVDVLTGDHEVRRVDLLVDVGSAINPAIDIGQIEGAFTQGMGWVTTEELI 225
                 45566358999*******************************************875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (439 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        55  (0.0134081); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.53u 0.12s 00:00:00.65 Elapsed: 00:00:00.67
# Mc/sec: 864.82
//
Query:       MMETSP1137-20121227|2502_1  [L=610]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (610 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        61  (0.0148708); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.16s 00:00:00.55 Elapsed: 00:00:00.60
# Mc/sec: 1341.89
//
Query:       MMETSP1137-20121227|2503_1  [L=292]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (292 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        88  (0.0214529); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.12s 00:00:00.36 Elapsed: 00:00:00.45
# Mc/sec: 856.46
//
Query:       MMETSP1137-20121227|2504_1  [L=460]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (460 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       490  (0.119454); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.16s 00:00:00.56 Elapsed: 00:00:00.46
# Mc/sec: 1319.89
//
Query:       MMETSP1137-20121227|2506_1  [L=97]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (97 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       105  (0.0255973); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.15s 00:00:00.30 Elapsed: 00:00:00.30
# Mc/sec: 426.76
//
Query:       MMETSP1137-20121227|2507_1  [L=174]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (174 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       230  (0.0560702); expected 82.0 (0.02)
Passed bias filter:                      142  (0.0346173); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.17s 00:00:00.37 Elapsed: 00:00:00.24
# Mc/sec: 956.92
//
Query:       MMETSP1137-20121227|2508_1  [L=155]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (155 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        83  (0.020234); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.16s 00:00:00.33 Elapsed: 00:00:00.23
# Mc/sec: 889.49
//
Query:       MMETSP1137-20121227|2509_1  [L=219]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.2e-30  102.1   0.0    1.6e-28   97.8   0.0    2.0  1  TIGR01830 3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase
    4.2e-24   83.2   0.1    5.5e-23   79.6   0.1    1.9  1  TIGR01832 kduD: 2-deoxy-D-gluconate 3-dehydrogenase
      2e-23   80.8   0.2    7.9e-22   75.5   0.1    2.6  1  TIGR01963 PHB_DH: 3-hydroxybutyrate dehydrogenase
    9.3e-22   75.7   0.1    1.2e-20   72.1   0.1    2.0  1  TIGR01829 AcAcCoA_reduct: acetoacetyl-CoA reductase
    5.2e-21   73.0   0.6    6.4e-20   69.4   0.4    1.9  1  TIGR03206 benzo_BadH: 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase
    3.9e-19   66.9   1.3    5.6e-18   63.2   0.9    2.0  1  TIGR03971 SDR_subfam_1: oxidoreductase, SDR family
    3.3e-18   63.9   0.1    3.6e-17   60.4   0.1    2.0  1  TIGR02415 23BDH: acetoin reductases
    3.1e-13   47.5   0.7    1.5e-12   45.2   0.5    1.9  1  TIGR01831 fabG_rel: putative 3-oxoacyl-(acyl-carrier-protein) reductase
    6.5e-11   39.1   0.2    9.7e-11   38.6   0.1    1.5  1  TIGR02632 RhaD_aldol-ADH: rhamnulose-1-phosphate aldolase/alcohol dehydrogenase
    8.7e-09   32.7   0.1    1.8e-08   31.6   0.0    1.5  2  TIGR02685 pter_reduc_Leis: pteridine reductase
    9.4e-07   26.1   0.1      0.012   12.7   0.0    2.2  2  TIGR03325 BphB_TodD: cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase


Domain annotation for each model (and alignments):
>> TIGR01830  3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.8   0.0   4.4e-31   1.6e-28      42     232 ..       5     192 ..       1     199 [. 0.90

  Alignments for each domain:
  == domain 1    score: 97.8 bits;  conditional E-value: 4.4e-31
   TIGR01830  42 elkeagvkaaavkldvsdeeevkelveeveeelgeidilvnnAGitrDklllrmkeedwdevikvnLkgvfnvtkavlkkmikkr......sGriinissvvgllGnagqanYaasKaGligltkslakElasrnitvnavaPGfietdmteklsekvk.....kkileqiplkrlgkpeevaaavafLasdeasyitGqvl 232
                 +++eag +a+ v++dv++ e+++++v+++++++ +id lvn  G              wd+  +vnL++ f +tk v++ m  +       +G+i+ni+sv + +G +    Ya +KaGl+ ltk  a El++++i+vna+  G+  td  ++l+         +++ ++ pl+r+ + ++va++v+fL sd a ++tG+v+
  MMETSP1137-20121227|2509_1   5 AIEEAGSRALFVECDVAEPEQIEKVVRRTKDAFMRIDGLVNCVG-------------XWDRLHAVNLRSHFLFTKDVSRVMRDQPfstghpRGSIVNIASVQSHAGLTECMAYAVAKAGLVCLTKNNAAELGKHAIKVNAINVGWCVTDQENVLQTAKAgpdwvTAADKSCPLGRILRMADVARLVVFLLSDGA-HVTGSVM 192
                 6899**************************************99.............6***********************987433333479********************************************************988888654322222788999*********************876.79**997 PP

>> TIGR01832  kduD: 2-deoxy-D-gluconate 3-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.6   0.1   1.5e-25   5.5e-23      43     237 ..       2     190 ..       1     195 [. 0.88

  Alignments for each domain:
  == domain 1    score: 79.6 bits;  conditional E-value: 1.5e-25
   TIGR01832  43 tqekvealGrkflslkadladeeaakalvdeaveeagkidilvnnaGiirredavefsekdwddvlnvnlkavfllsqavakkllkqG.....rkgkiiniasllsfqGGirvpsytasksavaGltkllanewakkginvnaiaPGyletnntealrade...krnaaileriPagrwGepedlagaavflassasdyvnGa 237
                 t+ ++e+ G ++l ++ d+a++e+++++v ++ +++ +id lvn  G              wd +  vnl++ fl+++ v++ + +q       +g i+nias+ s  G     +y+ +k +++ ltk  a+e+ k++i+vnai  G+  t+  + l++ +   +   a  +  P gr  + +d+a  +vfl s+ + +v+G 
  MMETSP1137-20121227|2509_1   2 TALAIEEAGSRALFVECDVAEPEQIEKVVRRTKDAFMRIDGLVNCVG-------------XWDRLHAVNLRSHFLFTKDVSRVMRDQPfstghPRGSIVNIASVQSHAGLTECMAYAVAKAGLVCLTKNNAAELGKHAIKVNAINVGWCVTDQENVLQTAKagpDWVTAADKSCPLGRILRMADVARLVVFLLSDGA-HVTGS 190
                 566899**************************************999.............5999999************99988665433334589*******************************************************99888766550005556666889*******************9876.46665 PP

>> TIGR01963  PHB_DH: 3-hydroxybutyrate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.5   0.1   2.1e-24   7.9e-22      43     245 ..       4     191 ..       1     196 [. 0.87

  Alignments for each domain:
  == domain 1    score: 75.5 bits;  conditional E-value: 2.1e-24
   TIGR01963  43 keleeaggevlalkadvtkeeeiadlieavaaefgsldiLvnnAGiqhvapieefptekfekiiavnltsafhtiraalpimkkqgw......GriiniasvhglvasafKsaYvaaKHglvGltKvlAlEvAetgitanaicPgyvrtpLvekqiadqaktrgiseeqvvkevllkkqptkrfvtveevaelalflasdaaaqitGqa 245
                  ++eeag ++l ++ dv++ e+i++++++++++f ++d Lvn  G              ++++ avnl s f  ++ + + m++q +      G i+niasv+++ + +   aY  aK glv ltK  A E  ++ i++nai+ g+  t   ++ + + ak+     + v      k+ p +r++ + +va l++fl sd a ++tG+ 
  MMETSP1137-20121227|2509_1   4 LAIEEAGSRALFVECDVAEPEQIEKVVRRTKDAFMRIDGLVNCVG-------------XWDRLHAVNLRSHFLFTKDVSRVMRDQPFstghprGSIVNIASVQSHAGLTECMAYAVAKAGLVCLTKNNAAELGKHAIKVNAINVGWCVTD--QENVLQTAKA---GPDWVTAA--DKSCPLGRILRMADVARLVVFLLSDGA-HVTGSV 191
                 568999************************************988.............7************************985333333399***************************************************9997..5556666655...34555433..4789********************976.578865 PP

>> TIGR01829  AcAcCoA_reduct: acetoacetyl-CoA reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.1   0.1   3.1e-23   1.2e-20      51     235 ..      12     193 ..       4     202 .. 0.87

  Alignments for each domain:
  == domain 1    score: 72.1 bits;  conditional E-value: 3.1e-23
   TIGR01829  51 dvavvkadvssfeeakaavakveaelGpvdvlvnnaGitrdavfkkmtkeqWeevidtnlnsvfnvtrpviegmlergf......GriinissvnGlkGqfGqanysaakaGliGftkalaqegakkgvtvnviaPGyiatemvkavre.....dvlkkivaqiPvkrlgkpeeiaaavaflaseeagyvtGatls 235
                    +v+ dv++ e+ +++v++ +++  ++d lvn+ G              W+ + ++nl s f  t++v   m+++ f      G i+ni+sv    G      y+ akaGl+ +tk  a+e  k+++ vn+i  G+  t+  + ++      d +++  ++ P++r+ + +++a++v+fl s+ +++vtG+ ++
  MMETSP1137-20121227|2509_1  12 RALFVECDVAEPEQIEKVVRRTKDAFMRIDGLVNCVG-------------XWDRLHAVNLRSHFLFTKDVSRVMRDQPFstghprGSIVNIASVQSHAGLTECMAYAVAKAGLVCLTKNNAAELGKHAIKVNAINVGWCVTDQENVLQTakagpDWVTAADKSCPLGRILRMADVARLVVFLLSD-GAHVTGSVMD 193
                 5668899999999999999999999999999999999.............6*************************98766666689****************************************************998654443311222566777889********************98.6799**9875 PP

>> TIGR03206  benzo_BadH: 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.4   0.4   1.7e-22   6.4e-20      44     242 ..       3     192 ..       1     196 [. 0.90

  Alignments for each domain:
  == domain 1    score: 69.4 bits;  conditional E-value: 1.7e-22
   TIGR03206  44 aaairekggkaeavavditdrasvdaavaaaeealgpvdvlvnnagwdvlkpflktekaewerliainltgalymhhavlkgmver......kagrivniasdaarvgssgeavyaackgglvafsktlarelarhgitvnvvcpgptdtalledvkseaekpeklieaftraiplgrlgkpddlagailflasddaafitgqvl 242
                 a ai e+g +a  v +d+++ + ++  v  +++a+  +d lvn  g              w+rl a+nl   + + + v + m ++       +g ivnias  + +g +    ya+ k glv+++k  a el +h i vn +  g   t   e+v + a+ +   ++a  ++ plgr+ +  d+a  ++fl sd a  +tg v+
  MMETSP1137-20121227|2509_1   3 ALAIEEAGSRALFVECDVAEPEQIEKVVRRTKDAFMRIDGLVNCVG-------------XWDRLHAVNLRSHFLFTKDVSRVMRDQpfstghPRGSIVNIASVQSHAGLTECMAYAVAKAGLVCLTKNNAAELGKHAIKVNAINVGWCVTD-QENVLQTAKAGPDWVTAADKSCPLGRILRMADVARLVVFLLSDGA-HVTGSVM 192
                 66899**************************************987.............6999999999999988999988887652222215799**************************************************99887.588999999999999**************************9876.7899987 PP

>> TIGR03971  SDR_subfam_1: oxidoreductase, SDR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.2   0.9   1.5e-20   5.6e-18      56     256 ..       2     190 ..       1     194 [. 0.89

  Alignments for each domain:
  == domain 1    score: 63.2 bits;  conditional E-value: 1.5e-20
   TIGR03971  56 taklvealGrkvlarkadvrkleelravveegveefGrldvvvanaGvlsygrafelseeqWdtvldvnlkGvWktvkavvPalier..knG...GsiiivssvaglkalpglahyaaakhGlvgltktlanelaeygirvnsihPtsvdtamiepeamrelfakreeaaraflpalpvsglvepedvadvvawlasdesryitGa 256
                 ta ++e++G ++l  ++dv + e++++vv+++ + f r+d +v+  G              Wd +  vnl+  +   k v  ++ ++    G   Gsi+ ++sv +  +l     ya+ak Glv ltk  a el+++ i+vn+i+   v   ++++e + +     ++ + a  ++ p+  ++   dva +v++l sd+++ +tG+
  MMETSP1137-20121227|2509_1   2 TALAIEEAGSRALFVECDVAEPEQIEKVVRRTKDAFMRIDGLVNCVG-------------XWDRLHAVNLRSHFLFTKDVSRVMRDQpfSTGhprGSIVNIASVQSHAGLTECMAYAVAKAGLVCLTKNNAAELGKHAIKVNAIN---VGWCVTDQENVLQTAKAGPDWVTAADKSCPLGRILRMADVARLVVFLLSDGAH-VTGS 190
                 8899************************************9999887.............599999999999999999999999887432233449***********************************************97...55666778889999999999999999999*********************986.5665 PP

>> TIGR02415  23BDH: acetoin reductases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.4   0.1   9.7e-20   3.6e-17      40     245 ..       2     192 ..       1     194 [. 0.84

  Alignments for each domain:
  == domain 1    score: 60.4 bits;  conditional E-value: 9.7e-20
   TIGR02415  40 takelkekgtkavavkldvsdkseveeaveqaveklGeldvlvnnaGvalvtpileiteeeleklynvnvkgvlfGiqaaaekfkklkhkGkiinaasiagvegspelsaysstkfavrgltqtaakeLakkgitvnayaPGivktemreeideklaelagkeigekleefsseiklGresePedvaelvsflasedsdyitGqsi 245
                 ta  ++e+g +a++v+ dv++ +++e++v+++++ +  +d lvn  G    + ++ ++  + + l+  +v  v+       + f   + +G i+n as+ ++ g  e  ay+ +k  +  lt+  a eL k+ i vna + G   t+  + ++++      k   + +++  ++  lGr  +  dva lv fl s+ + ++tG ++
  MMETSP1137-20121227|2509_1   2 TALAIEEAGSRALFVECDVAEPEQIEKVVRRTKDAFMRIDGLVNCVGX--WDRLHAVNL-RSHFLFTKDVSRVM-----RDQPFSTGHPRGSIVNIASVQSHAGLTECMAYAVAKAGLVCLTKNNAAELGKHAIKVNAINVGWCVTDQENVLQTA------KAGPDWVTAADKSCPLGRILRMADVARLVVFLLSDGA-HVTGSVM 192
                 57789***************************************9875..455554443.33556777777776.....35789999999****************************************************9999755544333......333344556667899*****************99765.7898765 PP

>> TIGR01831  fabG_rel: putative 3-oxoacyl-(acyl-carrier-protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.2   0.5     4e-15   1.5e-12     123     231 ..      78     191 ..       1     199 [. 0.79

  Alignments for each domain:
  == domain 1    score: 45.2 bits;  conditional E-value: 4e-15
   TIGR01831 123 irarkggriitlasvsgvmgnrgqvnysaakagligatkalavelakrkitvnciapglidte..mvaevekd....lkealklvpmkrvgkaeevaalaaflmsddaayvtrqv 231
                       g i+ +asv   +g    + y+ akagl+  tk  a el k  i vn i  g   t+   v +  k+    ++ a k  p+ r+ + ++va l+ fl+sd+a +vt  v
  MMETSP1137-20121227|2509_1  78 STGHPRGSIVNIASVQSHAGLTECMAYAVAKAGLVCLTKNNAAELGKHAIKVNAINVGWCVTDqeNVLQTAKAgpdwVTAADKSCPLGRILRMADVARLVVFLLSDGA-HVTGSV 191
                 44455699*************************************************987665224544444323336677899**********************97.466555 PP

>> TIGR02632  RhaD_aldol-ADH: rhamnulose-1-phosphate aldolase/alcohol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.6   0.1   2.6e-13   9.7e-11     515     596 ..      48     134 ..       5     193 .. 0.85

  Alignments for each domain:
  == domain 1    score: 38.6 bits;  conditional E-value: 2.6e-13
   TIGR02632 515 eeWdlnldilatGyflvareaarllrkqglg.....gnlvfiasknavvakknalaysaakaaeahlvrllaielaelgirvntvaP 596
                   Wd+ ++++ + +fl +++  r++r q  +     g++v ias+ + +   + +ay+ aka  + l +  a+el+++ i+vn+++ 
  MMETSP1137-20121227|2509_1  48 GXWDRLHAVNLRSHFLFTKDVSRVMRDQPFStghprGSIVNIASVQSHAGLTECMAYAVAKAGLVCLTKNNAAELGKHAIKVNAINV 134
                 47**************************7543344589**********************************************985 PP

>> TIGR02685  pter_reduc_Leis: pteridine reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0       1.1   4.2e+02      69      92 ..      24      47 ..      12      58 .. 0.80
   2 !   31.6   0.0   4.9e-11   1.8e-08     130     256 ..      61     192 ..      50     199 .. 0.77

  Alignments for each domain:
  == domain 1    score: -2.3 bits;  conditional E-value: 1.1
   TIGR02685 69 ssceeiidacfrafGrcdvlvnna 92
                ++ e+++  +  af r d lvn  
  MMETSP1137-20121227|2509_1 24 EQIEKVVRRTKDAFMRIDGLVNCV 47
                566788888888999999999965 PP

  == domain 2    score: 31.6 bits;  conditional E-value: 4.9e-11
   TIGR02685 130 plllikafaqrqkgtraelrssnlsivnlvdamtdqpllgfslytmakealeGltrsaalelaslqirvngvapGlsllpdampeevke...ey....rrkvplgqreasaeqiadvviflvskkakyitGtii 256
                  +l++k  ++ ++++  ++     sivn++    +  l     y++ak  l+ lt+  a el  + i+vn++  G  +  ++   ++ +   ++     +  plg+     +++a  v+fl+s+ a ++tG+++
  MMETSP1137-20121227|2509_1  61 HFLFTKDVSRVMRDQPFSTGHPRGSIVNIASVQSHAGLTECMAYAVAKAGLVCLTKNNAAELGKHAIKVNAINVGWCVTDQENVLQTAKagpDWvtaaDKSCPLGRILRM-ADVARLVVFLLSDGA-HVTGSVM 192
                 455666666555555555555678********99999*9999**********************************9987764433322122663322467899987665.579*********887.5899987 PP

>> TIGR03325  BphB_TodD: cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.7   0.0   3.2e-05     0.012      49      94 ..       9      54 ..       3      67 .. 0.90
   2 !   11.5   0.0   7.4e-05     0.027     134     250 ..      83     193 ..      74     204 .. 0.73

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 3.2e-05
   TIGR03325 49 hgdkvvgvegdvrllddhkeavarcveafgkldtlipnagiwdyst 94
                 g++ + ve dv   ++ ++ v+r  +af ++d l++ +g wd   
  MMETSP1137-20121227|2509_1  9 AGSRALFVECDVAEPEQIEKVVRRTKDAFMRIDGLVNCVGXWDRLH 54
                5778899************************************765 PP

  == domain 2    score: 11.5 bits;  conditional E-value: 7.4e-05
   TIGR03325 134 rgsviftvsnagfypngggalytaakhavvglvkelayelapy.vrvngvapgglstdlrglksldladksissvplgdllksvlpigrmadaeeytgayvffatrgdtvpltgavln 250
                 rgs++   s            y+ ak  +v l k+ a el+ + ++vn +  g   td      l+ a+     v  +d   +  p+gr+  +++ +   vf+   +d + +tg+v++
  MMETSP1137-20121227|2509_1  83 RGSIVNIASVQSHAGLTECMAYAVAKAGLVCLTKNNAAELGKHaIKVNAINVGWCVTDQEN--VLQTAKAGPDWVTAAD---KSCPLGRILRMADVARLVVFLL--SDGAHVTGSVMD 193
                 677766666666666667788*******************98769*********9999754..4555555555555444...3457777777777777667665..445556777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (219 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       113  (0.0275475); expected 82.0 (0.02)
Passed bias filter:                       96  (0.0234032); expected 82.0 (0.02)
Passed Vit filter:                        21  (0.00511945); expected 4.1 (0.001)
Passed Fwd filter:                        11  (0.00268162); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.37u 0.13s 00:00:00.50 Elapsed: 00:00:00.45
# Mc/sec: 642.35
//
Query:       MMETSP1137-20121227|2510_1  [L=410]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (410 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       153  (0.0372989); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.14s 00:00:00.43 Elapsed: 00:00:00.52
# Mc/sec: 1040.68
//
Query:       MMETSP1137-20121227|2511_1  [L=121]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (121 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        58  (0.0141394); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.16s 00:00:00.32 Elapsed: 00:00:00.69
# Mc/sec: 231.46
//
Query:       MMETSP1137-20121227|2512_1  [L=346]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.031   12.7   0.0      0.065   11.7   0.0    1.4  1  TIGR03318 YdfZ_fam: putative selenium-binding protein YdfZ


Domain annotation for each model (and alignments):
>> TIGR03318  YdfZ_fam: putative selenium-binding protein YdfZ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   1.6e-05     0.065      17      57 ..     180     220 ..     176     223 .. 0.90

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 1.6e-05
   TIGR03318  17 VmiagtGavdvikaihtegltaeqirrekvVllegceekfa 57 
                 V   +tG  + i ++ht  +t  q   +++  +  c ++f+
  MMETSP1137-20121227|2512_1 180 VWNPKTGEQEAIVEVHTKKITDMQFSSDQTLFVTSCTDQFV 220
                 556689*********************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (346 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        78  (0.0190151); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.27u 0.18s 00:00:00.45 Elapsed: 00:00:00.52
# Mc/sec: 878.24
//
Query:       MMETSP1137-20121227|2513_1  [L=328]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.1e-05   21.5   0.1       0.13   10.2   0.0    2.6  2  TIGR00369 unchar_dom_1: uncharacterized domain 1


Domain annotation for each model (and alignments):
>> TIGR00369  unchar_dom_1: uncharacterized domain 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.2   0.0   3.1e-05      0.13      45     112 ..      81     151 ..      44     155 .. 0.77
   2 !    8.4   0.2   0.00012      0.48      14      66 ..     208     260 ..     197     309 .. 0.76

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 3.1e-05
   TIGR00369  45 dtagslaaaltkeegkavvtlelnvnylr..pareGklrAia.kvvhlGrqtgvaeieivdeqgrlialar 112
                 d + + a+   +++    v + + +  +r  p+r+G++   + + v+ Gr++g  e +++de g  +a  +
  MMETSP1137-20121227|2513_1  81 DETTTWASIGLDPNRRPGVSISMDAHLIRpqPVRAGEVLIFCsSLVKHGRTLGFLECSVEDESGARMAWGK 151
                 555556666666666777888888888883359***6655551679******************9999776 PP

  == domain 2    score: 8.4 bits;  conditional E-value: 0.00012
   TIGR00369  14 edeelevempvkertlqpigsvHGGvlaaLadtagslaaaltkeegkavvtle 66 
                  d++   ++   e +l++ g++HG   a+L  +a  ++      +g   vtl+
  MMETSP1137-20121227|2513_1 208 ADGTTTFNFDCGEDHLNELGVMHGACQAVLHGSATEAVVIDAPAAGRDHVTLD 260
                 5788888999999*********************9555444445555555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (328 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        74  (0.01804); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.26u 0.15s 00:00:00.41 Elapsed: 00:00:00.40
# Mc/sec: 1082.31
//
Query:       MMETSP1137-20121227|2514_1  [L=312]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (312 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       199  (0.0485129); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.15s 00:00:00.40 Elapsed: 00:00:00.33
# Mc/sec: 1247.90
//
Query:       MMETSP1137-20121227|2515_1  [L=166]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.4e-06   24.5   0.0    0.00012   20.2   0.0    2.1  1  TIGR02469 CbiT: precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit


Domain annotation for each model (and alignments):
>> TIGR02469  CbiT: precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   0.0   2.8e-08   0.00012       2     122 ..      26     135 ..      25     137 .. 0.78

  Alignments for each domain:
  == domain 1    score: 20.2 bits;  conditional E-value: 2.8e-08
   TIGR02469   2 lTkeevRaltLakLrlkkgdvllDiGaGtGsvtieaarlvpkgrvyaierneealelieeNlrrfgvsnieivegdapkaeedsleeadavfvgGsgkklkeileaverrlrpggrivlna 122
                 +T +ev a +L   rl +g++l D G+G G  + +   +v++g+      +  ++++  +  r     ++++ ++da   ++d l +ad v +  s+   +++l  + + lrpg r+v n+
  MMETSP1137-20121227|2515_1  26 PTSPEVAARMLTLARLSPGERLCDLGCGDGXAADDGGAAVRRGK-----GDRLRARQHAATDR-----RVVVRRADAMGSAAD-LADADVVTLYLSDSGNAALLPLLRAALRPGARVVSNV 135
                 7999***************************9999999999888.....33333333333334.....455555555533444.78999999999999999****************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (166 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        99  (0.0241346); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.19u 0.14s 00:00:00.33 Elapsed: 00:00:00.39
# Mc/sec: 561.80
//
Query:       MMETSP1137-20121227|2516_1  [L=603]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (603 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       159  (0.0387616); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.11s 00:00:00.49 Elapsed: 00:00:00.56
# Mc/sec: 1396.31
//
Query:       MMETSP1137-20121227|2517_1  [L=88]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (88 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        57  (0.0138957); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.13s 00:00:00.26 Elapsed: 00:00:00.26
# Mc/sec: 446.73
//
Query:       MMETSP1137-20121227|2518_1  [L=405]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.3e-77  258.1   0.0    2.6e-72  241.5   0.0    2.3  2  TIGR01229 rocF_arginase: arginase
    1.1e-29  101.8   0.0    8.7e-29   98.8   0.0    2.0  1  TIGR01230 agmatinase: agmatinase
      2e-19   67.8   0.3    2.6e-18   64.1   0.1    2.4  2  TIGR01227 hutG: formimidoylglutamase


Domain annotation for each model (and alignments):
>> TIGR01229  rocF_arginase: arginase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.0   2.7e-06    0.0038       2      48 ..      30      76 ..      29      99 .. 0.88
   2 !  241.5   0.0   1.9e-75   2.6e-72      54     276 ..     148     366 ..     130     405 .] 0.93

  Alignments for each domain:
  == domain 1    score: 14.4 bits;  conditional E-value: 2.7e-06
   TIGR01229  2 ivglpfseGqgkrGvdkGpkalreaglleklkdlekevedlgqvaaa 48
                +vg+pf eGq   G d  p+a+reagl ++++ l+ +  d g++ +a
  MMETSP1137-20121227|2518_1 30 MVGAPFCEGQNLDGADLAPTAMREAGLPKAVQSLGWQWVDKGDLDFA 76
                79**********************************99999999844 PP

  == domain 2    score: 241.5 bits;  conditional E-value: 1.9e-75
   TIGR01229  54 sdreavkaersvlaakeklaekvkkvveekrfplvLggdHsiaiGtvsgvakkakdkklgvlwlDAHaDintletstSgnlHGmPlafllgrlkkevedleelkllkgkeispkklvyiGlRdvdegErkilkelgikvfsmkeidklGiakvvektleslkaed..pihlSlDvDglDpklapatGtpvrgGltfrEgklilelllesglltaldlvEvNPtld 276
                 +++++v + + ++a  + ++++v++ ++e++f+l +ggdHsia Gt+ ++  +++   lgv+w+DAHaD nt+ets+S + HGmP a llg     +++l+++++ k++++  ++l+yiGlRdvd+gE ++l++++++vf+m+++dk+Giakv+ek+l+++ +++  p+hl lD+D++Dp++ap+tGt  rgGlt+rE +++ e+++ +++l+++dlvEvNP ld
  MMETSP1137-20121227|2518_1 148 KKEKEVVNAELIGAGLKLVYDAVNEAAAEGNFVLAIGGDHSIATGTIGAMCAHYPG--LGVIWIDAHADANTPETSPSMHYHGMPAAHLLG----WFTELKGFGWFKPGCLCENRLAYIGLRDVDAGEAQMLHNSNVHVFTMRDVDKHGIAKVIEKALKAIDPNNnrPLHLTLDIDAVDPHFAPGTGTCARGGLTYREIHYVCEEMALTERLVSMDLVEVNPGLD 366
                 3356677778899*******************************************..*********************************....5677899************************************************************99999*******************************************************998 PP

>> TIGR01230  agmatinase: agmatinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.8   0.0   6.3e-32   8.7e-29      81     255 ..     165     365 ..     156     368 .. 0.80

  Alignments for each domain:
  == domain 1    score: 98.8 bits;  conditional E-value: 6.3e-32
   TIGR01230  81 kieevveelleegkfvvaiGGeHsitlpvirAvkkkfeklavvqfDAHtDlr.defegeklshacvmrrvl....elg............lnvlqigiRsgikeeadlarennikvlk.relede........iaevlakvldkpvyvtiDiDvlDPafaPGvgtpepgGltskellklfvlaekekkvvGlDvvEvaPvy 255
                  + + v+e  +eg+fv+aiGG+Hsi+++ i A+  +++ l v+ +DAH+D    e   + + h  +  ++l    el+             + + ig+R     ea++ ++ n++v++ r+++++          +++    ++p+++t+DiD++DP faPG+gt   gGlt +e+  + +    ++++v +D+vEv P  
  MMETSP1137-20121227|2518_1 165 LVYDAVNEAAAEGNFVLAIGGDHSIATGTIGAMCAHYPGLGVIWIDAHADANtPETSPSMHYHGMPAAHLLgwftELKgfgwfkpgclceNRLAYIGLRDVDAGEAQMLHNSNVHVFTmRDVDKHgiakviekALKAIDPNNNRPLHLTLDIDAVDPHFAPGTGTCARGGLTYREIHYVCEEMALTERLVSMDLVEVNPGL 365
                 5778899999****************************************997345555555555554443111133233344444666678999***********************99999988555532111222334689******************************9999999999**************965 PP

>> TIGR01227  hutG: formimidoylglutamase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0      0.12   1.6e+02      37      86 ..      28      73 ..      14      82 .. 0.68
   2 !   64.1   0.1   1.9e-21   2.6e-18      99     289 ..     165     366 ..     152     369 .. 0.80

  Alignments for each domain:
  == domain 1    score: -0.9 bits;  conditional E-value: 0.12
   TIGR01227 37 valiGvaldkgvirnkGrtGAkeaPsairqalanlgdlvase..alyDlGdi 86
                va++G ++ +g +      GA  aP a+r+a  +l+++v+s   + +D Gd+
  MMETSP1137-20121227|2518_1 28 VAMVGAPFCEGQNL-D---GADLAPTAMREA--GLPKAVQSLgwQWVDKGDL 73
                67777777777544.3...59********97..4544444431134566665 PP

  == domain 2    score: 64.1 bits;  conditional E-value: 1.9e-21
   TIGR01227  99 evaqavaelladarvvvllGGdneiayatikalaqaakgekriGvinfDAHfDlRavede..rptsGTpfrqlld.eeqaed...........fhlivlGirrfsntqalfdyakkkgvryvtddalaelsletikdileefldevD..fiyltvdlDVldaasAPGvsApaagGleleellelvkriaasdkvrgveivEvnPtlD 289
                  v  av+e+ a+++ v+ +GGd++ia  ti a+ ++++g    Gvi +DAH D  + e        G p  +ll  + + ++             l+ +G r ++  +a  +++++ +v++ t++ + ++ + +  + + +++d      + lt+d+D +d  +APG    a gGl  +e+  + + +a  +++ ++++vEvnP lD
  MMETSP1137-20121227|2518_1 165 LVYDAVNEAAAEGNFVLAIGGDHSIATGTIGAMCAHYPG---LGVIWIDAHADANTPETSpsMHYHGMPAAHLLGwFTELKGfgwfkpgclceNRLAYIGLRDVDAGEA--QMLHNSNVHVFTMRDVDKHGIAKVIEKALKAIDPNNnrPLHLTLDIDAVDPHFAPGTGTCARGGLTYREIHYVCEEMALTERLVSMDLVEVNPGLD 366
                 567889999999************************665...67**********9999654433368887776652233333334333455446799999999998886..68999************9776665555555555443226********************************************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (405 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       104  (0.0253535); expected 82.0 (0.02)
Passed bias filter:                      100  (0.0243784); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.35u 0.14s 00:00:00.49 Elapsed: 00:00:00.49
# Mc/sec: 1090.93
//
Query:       MMETSP1137-20121227|2519_1  [L=599]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0002   17.8   8.2     0.0018   14.7   0.7    2.5  2  TIGR01480 copper_res_A: copper-resistance protein, CopA family
    0.00021   18.1   0.2     0.0023   14.6   0.0    2.0  2  TIGR03389 laccase: laccase
  ------ inclusion threshold ------
        1.8    4.9   7.0      0.051   10.0   0.2    1.9  2  TIGR03388 ascorbase: L-ascorbate oxidase


Domain annotation for each model (and alignments):
>> TIGR01480  copper_res_A: copper-resistance protein, CopA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.7   1.3e-06    0.0018      97     161 ..       2      71 ..       1     106 [. 0.74
   2 !    6.7   0.7   0.00033      0.46     563     592 ..     333     363 ..     306     364 .. 0.80

  Alignments for each domain:
  == domain 1    score: 14.7 bits;  conditional E-value: 1.3e-06
   TIGR01480  97 etsihwhGillPaqmdGvPG.lsfaGiapGetftyrfkv...eqsGtywyhsh....safqeqaGlyGalvid 161
                 +t ih hG+ +       PG   f+ i+pG  + y f++   +  Gt+wyh h    +a+    G  G l++d
  MMETSP1137-20121227|2519_1   2 STNIHTHGLHISPLS---PGdDMFTKIGPGTSYEYIFEIpkdHMPGTHWYHPHfhgsTALHTGGGAAGFLIVD 71 
                 689999999775544...441359**************9444457*****99854544677777888888886 PP

  == domain 2    score: 6.7 bits;  conditional E-value: 0.00033
   TIGR01480 563 rvradal.GrwayhchlllhmeaGmlrevkv 592
                 r+ +d   G+   hch+l h + Gm++ ++v
  MMETSP1137-20121227|2519_1 333 RMITDHFgGEMVVHCHFLAHEDFGMMHLINV 363
                 5555554268999*************99887 PP

>> TIGR03389  laccase: laccase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.0   1.7e-06    0.0023      58     250 ..       5     211 ..       1     221 [. 0.74
   2 ?    0.9   0.3     0.023        32     497     516 ..     341     360 ..     325     375 .. 0.72

  Alignments for each domain:
  == domain 1    score: 14.6 bits;  conditional E-value: 1.7e-06
   TIGR03389  58 lhwhGvrqlrngwadGPeyitqcPirpGqsyvykftitgqr..gtlfwhahiswlratvyG.....alvilPkkgssyPfpkpdkevalilgewwkadveav....inqalkt..GaaPnvsday....tinGkpGalyncskkdtfklkvekgktyllriinaalneelffaianhkltvvevdatyvkpfktkvl..liaPGqttdvllk 250
                 +h hG++   ++ + G +  t+  i pG sy y f+i  ++  gt ++h h++   a   G      l++   +g  +P +  + e  l++    +++ +++     +q  k   G++ +  d +     +nG p ++      +  +l++ +++ y+lr++ ++++  +   i++ +  ++++d++y+ +   + +  +++PG+  d l++
  MMETSP1137-20121227|2519_1   5 IHTHGLH--ISPLSPGDDMFTK--IGPGTSYEYIFEIPKDHmpGTHWYHPHFHGSTALHTGggaagFLIVDDPPG-YLPPAIENLEEFLLVITHLNSQLMKLyssmYEQNCKVlgGSDLDCHDKFwasgPLNGAPIDTLLVNGLQEPRLEIVANRWYRLRLLFSSIDVAISPVISGCTTKLLAKDGVYLHQAPRDLVrgFMGPGNRADWLIN 211
                 7888875..4678888888886..88999999999998765449*******998877544322220455555555.66666666666666666777777665111145554433266667777653333589999999999998889******************************************9998888755799**99999886 PP

  == domain 2    score: 0.9 bits;  conditional E-value: 0.023
   TIGR03389 497 GvwllhchlevhltwGlkma 516
                 G  ++hch+  h  +G+   
  MMETSP1137-20121227|2519_1 341 GEMVVHCHFLAHEDFGMMHL 360
                 56789***********8533 PP

>> TIGR03388  ascorbase: L-ascorbate oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.2   3.8e-05     0.051      56     128 ..       4      79 ..       1     191 [. 0.79
   2 ?   -3.7   1.0      0.53   7.2e+02     495     519 ..     333     358 ..     323     370 .. 0.73

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 3.8e-05
   TIGR03388  56 vihwhGirqiGtpwadGtagvtqcainpgetfiykfvvdk...pGtylyhghy....GmqrsaGlyGslivevadgekep 128
                  ih hG++   +p   G +  t+  i pg ++ y f + k   pGt+ yh h+     +    G  G liv+ + g   p
  MMETSP1137-20121227|2519_1   4 NIHTHGLHI--SPLSPGDDMFTK--IGPGTSYEYIFEIPKdhmPGTHWYHPHFhgstALHTGGGAAGFLIVDDPPGYLPP 79 
                 678888764..677888877775..89*********99654559********8433235667899999999988776555 PP

  == domain 2    score: -3.7 bits;  conditional E-value: 0.53
   TIGR03388 495 rfradnp.GvwafhchieshlfmGmG 519
                 r+ +d   G  + hch  +h   Gm 
  MMETSP1137-20121227|2519_1 333 RMITDHFgGEMVVHCHFLAHEDFGMM 358
                 6677764156789****999999984 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (599 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        84  (0.0204778); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.45u 0.18s 00:00:00.63 Elapsed: 00:00:00.53
# Mc/sec: 1491.73
//
Query:       MMETSP1137-20121227|2520_1  [L=215]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (215 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       120  (0.029254); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.16s 00:00:00.36 Elapsed: 00:00:00.43
# Mc/sec: 659.95
//
Query:       MMETSP1137-20121227|2521_1  [L=465]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.073    8.5  12.5       0.12    7.8   8.7    1.2  1  TIGR00927 2A1904: K+-dependent Na+/Ca+ exchanger


Domain annotation for each model (and alignments):
>> TIGR00927  2A1904: K+-dependent Na+/Ca+ exchanger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   8.7   2.8e-05      0.12     924    1010 ..     258     349 ..     244     356 .. 0.54

  Alignments for each domain:
  == domain 1    score: 7.8 bits;  conditional E-value: 2.8e-05
   TIGR00927  924 ekdegeedeeeiaddeevkdetgeqelnaenqgeakedekGvdgegg...sdGGdseeeeeeeeeeeeeeeeeeeeeeeeee..neeplsle 1010
                  e + +e++   i  dee + +  ++ l aen ++ + +   +    +    + G+ eeee eeee+ee      eeee+eee    +p+s +
  MMETSP1137-20121227|2521_1  258 EFEGEEGEAPPIVRDEEYEAKSAKEMLDAENWCHFAPGVLKIGRCTNppkPEAGEDEEEEAEEEEQEEXAPVXAEEEEQEEEvaPLNPISSD 349 
                  33333445556778888888888888999999998887766654443000344444444444444333322222333322221234555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (465 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       107  (0.0260848); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.13s 00:00:00.50 Elapsed: 00:00:00.44
# Mc/sec: 1394.88
//
Query:       MMETSP1137-20121227|2522_1  [L=38]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (38 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        22  (0.00536324); expected 82.0 (0.02)
Passed bias filter:                       20  (0.00487567); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.11s 00:00:00.20 Elapsed: 00:00:00.35
# Mc/sec: 143.30
//
Query:       MMETSP1137-20121227|2523_1  [L=205]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.4e-07   28.4   0.0      6e-07   27.7   0.0    1.4  1  TIGR00051 TIGR00051: acyl-CoA thioester hydrolase, YbgC/YbaW family


Domain annotation for each model (and alignments):
>> TIGR00051  TIGR00051: acyl-CoA thioester hydrolase, YbgC/YbaW family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.7   0.0   1.5e-10     6e-07       2     116 ..      80     188 ..      79     189 .. 0.89

  Alignments for each domain:
  == domain 1    score: 27.7 bits;  conditional E-value: 1.5e-10
   TIGR00051   2 vRvyyedtDaqgiVyhanYlkyleeartellralgFkqsvleeegvafvvvkikieYkkparlddvleirteleelkgvsvvfsqeivredeallkaetklvvcvdkkkqkaval 116
                 +R + +d D  g++++  Y +y++ a+ + l ++g        +  a +v+++ + Y++p+++  ++ +  ++++l +++ ++   ++++      a+  ++ c + ++ ++v++
  MMETSP1137-20121227|2523_1  80 IRTRLNDNDMFGHINNVMYYAYMDDAVNAHLLDNGI-----GVN-YARMVLQSGCRYMQPISYPCIIDVGLRISKLGRSTATYDIGLFQAGVDAXAAQGTYTHCYVDASGRPVSI 188
                 788999*************************65554.....333.667899**************************************99988888888877988899999886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (205 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        91  (0.0221843); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.20u 0.17s 00:00:00.37 Elapsed: 00:00:00.36
# Mc/sec: 751.60
//
Query:       MMETSP1137-20121227|2524_1  [L=97]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (97 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        86  (0.0209654); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.17s 00:00:00.33 Elapsed: 00:00:00.68
# Mc/sec: 188.28
//
Query:       MMETSP1137-20121227|2525_1  [L=133]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00014   19.2   1.5    0.00016   19.0   1.0    1.1  1  TIGR02349 DnaJ_bact: chaperone protein DnaJ


Domain annotation for each model (and alignments):
>> TIGR02349  DnaJ_bact: chaperone protein DnaJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   1.0     4e-08   0.00016     154     203 ..      38      83 ..      24     102 .. 0.81

  Alignments for each domain:
  == domain 1    score: 19.0 bits;  conditional E-value: 4e-08
   TIGR02349 154 akkgsklktCktCgGtGqvrkqqgtllgffqsqqtCseCkGeGkiikekC 203
                 ++k +++k+C  C+ +G +++q     g+  + q C++C+GeG i+ ++ 
  MMETSP1137-20121227|2525_1  38 YDKLADVKICAACQAQGIIKVQY----GYRVMDQVCEQCDGEGCIHPKQK 83 
                 5667899**********888777....588899**********9987764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (133 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       168  (0.0409556); expected 82.0 (0.02)
Passed bias filter:                      133  (0.0324232); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.17u 0.16s 00:00:00.33 Elapsed: 00:00:00.44
# Mc/sec: 398.97
//
Query:       MMETSP1137-20121227|2526_1  [L=46]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (46 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        19  (0.00463189); expected 82.0 (0.02)
Passed bias filter:                       19  (0.00463189); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.15s 00:00:00.25 Elapsed: 00:00:00.39
# Mc/sec: 155.68
//
Query:       MMETSP1137-20121227|2527_1  [L=233]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.2e-06   23.0   0.0    1.1e-05   22.6   0.0    1.1  1  TIGR00588 ogg: 8-oxoguanine DNA-glycosylase (ogg)


Domain annotation for each model (and alignments):
>> TIGR00588  ogg: 8-oxoguanine DNA-glycosylase (ogg)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.6   0.0   2.6e-09   1.1e-05     234     305 ..       2      72 ..       1      77 [. 0.77

  Alignments for each domain:
  == domain 1    score: 22.6 bits;  conditional E-value: 2.6e-09
   TIGR00588 234 DCicLmaldkdeavPvDvhvrriakrdysirpkesrakgavplarkelgnlfrklwGeyagwaqavLfskel 305
                 DC++L+a+ +d +vPvD h  ++a+        ++++ +a  l ++ ++ +     Gey gwa + Lf  el
  MMETSP1137-20121227|2527_1   2 DCVLLFAYARDAVVPVDTHCLQMARAFLLPPALKKKSLNAA-LYEQIVQCFVDAFGGEYTGWAFMTLFVGEL 72 
                 9*********************9876655555666666554.555546667677668**********98765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (233 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        48  (0.0117016); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.22u 0.16s 00:00:00.38 Elapsed: 00:00:00.46
# Mc/sec: 668.55
//
Query:       MMETSP1137-20121227|2528_1  [L=292]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (292 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        51  (0.012433); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.17s 00:00:00.41 Elapsed: 00:00:00.28
# Mc/sec: 1328.99
//
Query:       MMETSP1137-20121227|2529_1  [L=367]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (367 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       131  (0.0319356); expected 82.0 (0.02)
Passed bias filter:                      100  (0.0243784); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.16s 00:00:00.44 Elapsed: 00:00:00.44
# Mc/sec: 1100.91
//
Query:       MMETSP1137-20121227|2530_1  [L=62]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (62 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        42  (0.0102389); expected 82.0 (0.02)
Passed bias filter:                       40  (0.00975134); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.13s 00:00:00.24 Elapsed: 00:00:00.24
# Mc/sec: 340.97
//
Query:       MMETSP1137-20121227|2531_1  [L=180]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (180 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        57  (0.0138957); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.16s 00:00:00.35 Elapsed: 00:00:00.24
# Mc/sec: 989.92
//
Query:       MMETSP1137-20121227|2532_1  [L=140]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.9e-39  131.7   0.0    4.5e-39  131.4   0.0    1.0  1  TIGR01632 L11_bact: ribosomal protein L11


Domain annotation for each model (and alignments):
>> TIGR01632  L11_bact: ribosomal protein L11
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  131.4   0.0   1.1e-42   4.5e-39       5     135 ..       6     139 ..       3     140 .] 0.96

  Alignments for each domain:
  == domain 1    score: 131.4 bits;  conditional E-value: 1.1e-42
   TIGR01632   5 aiiklqveagkAkPsppvGpalgqkgvnimeFckefNartkdlekgvvvpvvitvyeDksftfivktppvsvllkkaagvekgskkpkkekvgkitlkqvreiAklKlsD....lnaleleaavkiiaGtAksmG 135
                 +i kl+v agkA+P ppvG  lgq+g+n+m+Fck+fN++t+++ +g++++v +  y+D++ftf v  p ++++l kaa++ekg+ + ++ kvg+++++q++eiAkl+ +D     + ++le+++++++ +  smG
  MMETSP1137-20121227|2532_1   6 SIFKLTVGAGKATPQPPVGSMLGQRGLNLMNFCKAFNDQTQQYVAGLPMQVQVKSYADRTFTFDVLLPTATYFLLKAAKLEKGAPD-GTAKVGRLSVTQIYEIAKLRYEDpslrAKFRSLEGLCRSMVASCGSMG 139
                 688********************************************************************************975.7889*******************987778899***************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (140 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        62  (0.0151146); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.17u 0.14s 00:00:00.31 Elapsed: 00:00:00.25
# Mc/sec: 739.14
//
Query:       MMETSP1137-20121227|2533_1  [L=110]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (110 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        27  (0.00658216); expected 82.0 (0.02)
Passed bias filter:                       25  (0.00609459); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.13s 00:00:00.27 Elapsed: 00:00:00.30
# Mc/sec: 483.96
//
Query:       MMETSP1137-20121227|2534_1  [L=325]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0035   14.4  15.1     0.0038   14.4   9.7    1.6  1  TIGR00599 rad18: DNA repair protein rad18


Domain annotation for each model (and alignments):
>> TIGR00599  rad18: DNA repair protein rad18
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   9.7   9.2e-07    0.0038      29      71 ..     101     146 ..      94     251 .. 0.65

  Alignments for each domain:
  == domain 1    score: 14.4 bits;  conditional E-value: 9.2e-07
   TIGR00599  29 ChvCkd.ffkaPvlt..sCsHtFCslCiRrcLseepkCPlCraedq 71 
                 C vC   f +  +l   +C+H FC  C Rr+L+++  CPlCr + +
  MMETSP1137-20121227|2534_1 101 CAVCLTpFSRGQLLKrlPCEHVFCERCTRRWLEQHVTCPLCRRDCR 146
                 777754144555553339***********************97654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (325 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       347  (0.0845929); expected 82.0 (0.02)
Passed bias filter:                      122  (0.0297416); expected 82.0 (0.02)
Passed Vit filter:                        19  (0.00463189); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.13s 00:00:00.47 Elapsed: 00:00:00.47
# Mc/sec: 912.69
//
Query:       MMETSP1137-20121227|2535_1  [L=135]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (135 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        47  (0.0114578); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.17s 00:00:00.33 Elapsed: 00:00:00.33
# Mc/sec: 539.96
//
Query:       MMETSP1137-20121227|2536_1  [L=379]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.4e-51  171.7   0.0    7.9e-51  171.4   0.0    1.1  1  TIGR01973 NuoG: NADH dehydrogenase (quinone), G subunit
    3.1e-06   23.4   0.0     0.0001   18.3   0.0    2.2  2  TIGR01591 Fdh-alpha: formate dehydrogenase, alpha subunit
     0.0061   12.7   0.0      0.017   11.2   0.0    1.6  2  TIGR01706 NAPA: periplasmic nitrate reductase, large subunit


Domain annotation for each model (and alignments):
>> TIGR01973  NuoG: NADH dehydrogenase (quinone), G subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  171.4   0.0   5.8e-54   7.9e-51     282     594 ..       3     293 ..       1     304 [. 0.93

  Alignments for each domain:
  == domain 1    score: 171.4 bits;  conditional E-value: 5.8e-54
   TIGR01973 282 leevswaealkaiaeklkaiksskigviagarlsleelfalkklvralgsenldlrirnkeleadlvaelllnttlkeieeadvvllvGadlrkeapllnlrlrkavkkkaakvaligiekkdltaakelkllkalgeeekkLddiasgasleeiakalkaakkpliivGesalselkaaallkaaakiakvikvredeaaglnllsseansvglaelglesaakalekllelekadllvlleadlevaldkvareallkakafvvvqdhhgtetaekadvvLPaaaftEksgtvvnleGraqrfekavkskg 594
                 l++vsw+ al+a+a+ l ++ +  ig++ag+ +++e+l+a+k+l+++lgs      +r +    dl+ ++l+n+t++ +eead++llvG+++r eapl+n+r+rk v++ +  va++g +  dlt++     +++lg ++ ++++++  +s+  + k l +a+ p+++vG  al++++++a+ + a +iak+++ ++d+++g+ +l+++ ++ g+ ++g+++  +  +k ++  ++ +++l++ad       +  ++++   +fv++q+hhg++ a+ ad+vLP+aa+tEks+t+v++eGr+qr+ +a+  + 
  MMETSP1137-20121227|2536_1   3 LTQVSWKVALEAAASALASVPGTSIGAFAGPLADVESLVAVKDLFNKLGSTTTVGPARLSA---DLRPSYLMNSTIAGLEEADALLLVGSNPRIEAPLVNSRIRKMVRHFDLPVASVG-PAADLTYE-----YEHLGATSDAVAKLLDDSSA--FGKVLRDAEXPVVLVGMGALNRPDGEAIGALAKQIAKKCGAVKDSWNGFGVLQTSGAAAGALDIGFVP--GPTAKPMS--ELRVVYLVGAD------DAPLKEMS-PGTFVIYQGHHGDAGASVADLVLPGAAYTEKSATYVSTEGRVQRTSRALGHQR 293
                 789********************************************99998888877776...999*******************************************9*******.99******.....***************99999..99*****************************************************************9..66555555..89*********......56666664.789******************************************99987665 PP

>> TIGR01591  Fdh-alpha: formate dehydrogenase, alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    2.7   0.0    0.0042       5.8     146     180 ..      71     105 ..      51     109 .. 0.90
   2 !   18.3   0.0   7.6e-08    0.0001     422     458 ..     253     289 ..     220     306 .. 0.85

  Alignments for each domain:
  == domain 1    score: 2.7 bits;  conditional E-value: 0.0042
   TIGR01591 146 ssntiseienadliviiGanpaesHPvvasklvka 180
                 + +ti+ +e+ad+++ +G np    P+v s++ k 
  MMETSP1137-20121227|2536_1  71 MNSTIAGLEEADALLLVGSNPRIEAPLVNSRIRKM 105
                 6789999***********************99875 PP

  == domain 2    score: 18.3 bits;  conditional E-value: 7.6e-08
   TIGR01591 422 tetAkyAdvvLPaaafaEkeGtftnaeRriqlvfkav 458
                    A++Ad+vLP+aa++Ek  t++ +e r+q++ +a+
  MMETSP1137-20121227|2536_1 253 DAGASVADLVLPGAAYTEKSATYVSTEGRVQRTSRAL 289
                 5679****************************99987 PP

>> TIGR01706  NAPA: periplasmic nitrate reductase, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0      0.13   1.7e+02     204     229 ..      78     103 ..      74     117 .. 0.84
   2 !   11.2   0.0   1.3e-05     0.017     504     546 ..     242     284 ..     233     293 .. 0.86

  Alignments for each domain:
  == domain 1    score: -2.1 bits;  conditional E-value: 0.13
   TIGR01706 204 ieaadafvlwganmaemhpilwsrvt 229
                 +e+ada++l g+n     p++ sr+ 
  MMETSP1137-20121227|2536_1  78 LEEADALLLVGSNPRIEAPLVNSRIR 103
                 799**********9999999999995 PP

  == domain 2    score: 11.2 bits;  conditional E-value: 1.3e-05
   TIGR01706 504 dnfivvsdayptvsakaadlilpsamwvekegaygnaerrtqv 546
                   f++    +    a +adl+lp a + ek  +y  +e r q 
  MMETSP1137-20121227|2536_1 242 GTFVIYQGHHGDAGASVADLVLPGAAYTEKSATYVSTEGRVQR 284
                 56888888888899************************99985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (379 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       100  (0.0243784); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.32u 0.15s 00:00:00.47 Elapsed: 00:00:00.47
# Mc/sec: 1064.34
//
Query:       MMETSP1137-20121227|2537_1  [L=331]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (331 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        59  (0.0143832); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.13s 00:00:00.36 Elapsed: 00:00:00.37
# Mc/sec: 1180.77
//
Query:       MMETSP1137-20121227|2539_1  [L=69]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (69 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        40  (0.00975134); expected 82.0 (0.02)
Passed bias filter:                       38  (0.00926377); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.14s 00:00:00.27 Elapsed: 00:00:00.23
# Mc/sec: 395.97
//
Query:       MMETSP1137-20121227|2540_1  [L=349]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (349 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        56  (0.0136519); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.10s 00:00:00.35 Elapsed: 00:00:00.69
# Mc/sec: 667.60
//
Query:       MMETSP1137-20121227|2541_1  [L=75]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (75 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        66  (0.0160897); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.17s 00:00:00.29 Elapsed: 00:00:00.62
# Mc/sec: 159.66
//
Query:       MMETSP1137-20121227|2542_1  [L=120]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (120 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        74  (0.01804); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.17s 00:00:00.33 Elapsed: 00:00:00.40
# Mc/sec: 395.97
//
Query:       MMETSP1137-20121227|2543_1  [L=678]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.4e-07   26.6   0.7     0.0052   14.1   0.1    2.5  2  TIGR03162 ribazole_cobC: alpha-ribazole phosphatase
    0.00013   19.7   0.1     0.0035   15.1   0.0    2.4  2  TIGR00249 sixA: phosphohistidine phosphatase SixA
  ------ inclusion threshold ------
      0.014   12.7   0.0      0.024   11.8   0.0    1.3  1  TIGR01258 pgm_1: phosphoglycerate mutase 1 family


Domain annotation for each model (and alignments):
>> TIGR03162  ribazole_cobC: alpha-ribazole phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.1   3.8e-06    0.0052       1      59 [.     122     196 ..     122     214 .. 0.79
   2 !   10.4   0.0     5e-05     0.068     114     156 ..     582     624 ..     575     642 .. 0.85

  Alignments for each domain:
  == domain 1    score: 14.1 bits;  conditional E-value: 3.8e-06
   TIGR03162   1 lyLiRHgevevnkgkc......Y.GqtDvpLaekgeeqaaalrekl.........edvkfdavvsSplsRcrelA 59 
                 +yL+RHge  +n  ++           D pL+++g++qa+a+++++         e   ++av++Sp +R+ ++ 
  MMETSP1137-20121227|2543_1 122 IYLVRHGESVWNLARRsrnvvaMlSDVDHPLTQRGRAQAQAIAARVsasaceyarEMRGATAVWCSPHTRAVQTC 196
                 79******988766542222223367899****************98888777766666889*********9886 PP

  == domain 2    score: 10.4 bits;  conditional E-value: 5e-05
   TIGR03162 114 GEsvadfsqRveefleelakeekenvlivtHgGvirallahll 156
                  Es + + +Rv e++++l  +e+e++++v+H+  +r ll   +
  MMETSP1137-20121227|2543_1 582 HESRSFVRERVDELIQQLRYSEHETIILVGHAHLFRELLRLCR 624
                 58899999************************99998876554 PP

>> TIGR00249  sixA: phosphohistidine phosphatase SixA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   2.5e-06    0.0035       3      68 ..     122     204 ..     121     214 .. 0.78
   2 ?    1.8   0.0     0.031        42      87     113 ..     592     618 ..     545     634 .. 0.88

  Alignments for each domain:
  == domain 1    score: 15.1 bits;  conditional E-value: 2.5e-06
   TIGR00249   3 lylmrHGe.....Akekaa.....sDkeRqLtkkGkdeaervaqwLkkag.......veldrilvSplvRAeqtaeivadald 68 
                 +yl+rHGe     A+ + +     sD + +Lt++G  +a+ +a+++ +              ++ Sp  RA qt  i  +++ 
  MMETSP1137-20121227|2543_1 122 IYLVRHGEsvwnlARRSRNvvamlSDVDHPLTQRGRAQAQAIAARVSASAceyaremRGATAVWCSPHTRAVQTCLIAFKCML 204
                 89*****933333344444778899**********************99955554433345699**********998888776 PP

  == domain 2    score: 1.8 bits;  conditional E-value: 0.031
   TIGR00249  87 vadyleelkeegvksvllvsHlPllge 113
                 v ++ ++l+   +++++lv+H  l  e
  MMETSP1137-20121227|2543_1 592 VDELIQQLRYSEHETIILVGHAHLFRE 618
                 7889999**99**********866555 PP

>> TIGR01258  pgm_1: phosphoglycerate mutase 1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   1.8e-05     0.024       3      67 ..     122     199 ..     120     205 .. 0.64

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 1.8e-05
   TIGR01258   3 lvlvrhGeseWn....kenlftGWvdve..lsekGkeeakeagkllkeeklef.......dvaytsllkraiktlniv 67 
                 + lvrhGes Wn    ++n  +   dv+  l+++G+++a++ +  +  +  e+         ++ s  +ra++t+ i+
  MMETSP1137-20121227|2543_1 122 IYLVRHGESVWNlarrSRNVVAMLSDVDhpLTQRGRAQAQAIAARVSASACEYaremrgaTAVWCSPHTRAVQTCLIA 199
                 569*********554445767666666444********9987776665544431111111345677777777777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (678 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       230  (0.0560702); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.44u 0.16s 00:00:00.60 Elapsed: 00:00:00.54
# Mc/sec: 1657.20
//
Query:       MMETSP1137-20121227|2545_1  [L=148]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (148 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       151  (0.0368113); expected 82.0 (0.02)
Passed bias filter:                      137  (0.0333983); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.17s 00:00:00.34 Elapsed: 00:00:00.35
# Mc/sec: 558.13
//
Query:       MMETSP1137-20121227|2546_1  [L=377]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   1.6e-106  353.8   1.3   2.1e-106  353.4   0.9    1.1  1  TIGR02749 prenyl_cyano: solanesyl diphosphate synthase
    5.7e-64  214.0   0.0    6.8e-64  213.8   0.0    1.0  1  TIGR02748 GerC3_HepT: heptaprenyl diphosphate synthase component II


Domain annotation for each model (and alignments):
>> TIGR02749  prenyl_cyano: solanesyl diphosphate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  353.4   0.9    1e-109  2.1e-106       7     320 ..      62     375 ..      57     377 .] 0.98

  Alignments for each domain:
  == domain 1    score: 353.4 bits;  conditional E-value: 1e-109
   TIGR02749   7 lapvekdlealtknlkslvGakhPilsaaaehlfeagGkrlrPaivllvsrataeeeeltarhrrlaeitelihtaslvhddvvdesdvrrgvetvhslfdtrvavlaGdflfaqaswylanlenlevvkllskvikdfaeGeikqglnrfdsdlsledyleksyyktaslvaasskaaavlsevdsevaedlyeyGkhlGlafqvvddildftgsteklGkPaasdlkkGnltaPvlfaleeepklselierefsekkdlekalelvkeskaikkarelakekaqlalkslevlpksaskealkelvefvler 320
                 + +v+++l+ l+  +k+lvG++hP+lsaaa+h+fe +Gkr+rP++v+l + a a  e  +a +rrlaeite+ih+asl+hddv+d +d+rrg+++ h+ ++++vavlaGdfl+a+as  la+l+++ vv+ll++vi+++ +Ge+ q  +  +  +s+e+yl+k+y kta+l+a s+ a a+l     eva +l  yG hlG+a+qvvdd+ldftg++ +lGkP+ sd+++G  taP lfa ee+p++ eli r+f+e++d+  +  lv +s ++ ++ ela+ +aq+a ++l vlp+s++++al  l   vl+r
  MMETSP1137-20121227|2546_1  62 FVLVKSQLRPLDASIKELVGTDHPVLSAAAHHFFELAGKRFRPTLVILAASAAAGGEPAQASQRRLAEITEMIHAASLLHDDVIDLADTRRGTKAAHKIYGNKVAVLAGDFLLARASVLLARLKDVRVVELLATVIEEMVQGEMMQVRATPEQLVSFEHYLDKTYRKTAALMALSCEASALLGGHSDEVAAALQAYGXHLGIAYQVVDDLLDFTGTNTSLGKPSLSDMEQGLATAPTLFAAEEHPQIVELITRRFKEEGDVAACSALVARSAGLARTAELASSHAQMAADALGVLPPSSARDALLRLCFDVLNR 375
                 568999***********************************************************************************************************************************************************************************************************************************************************************************************************998877776 PP

>> TIGR02748  GerC3_HepT: heptaprenyl diphosphate synthase component II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  213.8   0.0   3.3e-67   6.8e-64       8     310 ..      64     368 ..      57     376 .. 0.91

  Alignments for each domain:
  == domain 1    score: 213.8 bits;  conditional E-value: 3.3e-67
   TIGR02748   8 flkedieviekelekavqaeaevlkeaalellkaGGkrirPvfvllagklg...dydldklkkvavalelihmaslvhddviddaelrrGketikskwdnriamytGdyllaksletiteiedprvhkilsktivevclGeieqikdkynfdqnlrtylrrikrktalliaascqlGaivagadeeivkklyyfgyyvGmsyqiiddildfvgteeelGkPaGedllqGnvtlPvlyaledea.lkkklekvleettaeeleelieevkksdaiekalavsdlylkkalelldelPkseakkalkei 310
                  +k+ +  +++ +++ v ++++vl+ aa ++++  Gkr rP +v+la+  +   +      +++a   e+ih asl+hddvid a+ rrG ++ +  ++n++a+ +Gd+lla++   +++++d+rv ++l+++i e+ +Ge+ q++   +   ++ +yl +  rkta l+a sc+  a+ +g ++e   +l  +g ++G++yq++dd+ldf+gt+  lGkP+ +d+ qG  t P+l+a e++  + + +++ ++e+   ++++  + v +s+++ ++ +++  + + a ++l  lP s+a+ al  +
  MMETSP1137-20121227|2546_1  64 LVKSQLRPLDASIKELVGTDHPVLSAAAHHFFELAGKRFRPTLVILAASAAaggEPAQASQRRLAEITEMIHAASLLHDDVIDLADTRRGTKAAHKIYGNKVAVLAGDFLLARASVLLARLKDVRVVELLATVIEEMVQGEMMQVRATPEQLVSFEHYLDKTYRKTAALMALSCEASALLGGHSDEVAAALQAYGXHLGIAYQVVDDLLDFTGTNTSLGKPSLSDMEQGLATAPTLFAAEEHPqIVELITRRFKEE--GDVAACSALVARSAGLARTAELASSHAQMAADALGVLPPSSARDALLRL 368
                 677888899999**********************************9876532355566778899999*******************************************************************************999999************************************************************************************9987653777777766654..567777778899*******************************998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (377 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       118  (0.0287665); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.19u 0.25s 00:00:00.44 Elapsed: 00:00:00.48
# Mc/sec: 1036.66
//
Query:       MMETSP1137-20121227|2547_1  [L=469]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (469 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        96  (0.0234032); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.24s 00:00:00.47 Elapsed: 00:00:00.85
# Mc/sec: 728.27
//
Query:       MMETSP1137-20121227|2548_1  [L=94]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.035   12.7   0.2      0.039   12.5   0.1    1.1  1  TIGR02747 TraV: type IV conjugative transfer system protein TraV


Domain annotation for each model (and alignments):
>> TIGR02747  TraV: type IV conjugative transfer system protein TraV
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.1   9.5e-06     0.039      16      59 ..      40      83 ..      30      94 .] 0.82

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 9.5e-06
   TIGR02747 16 tGCsaglnsdfeCeategvgtcatmdqvnedkkrleqqeevkkd 59
                 GCsa+  s+ e      ++ + +m  vn++kk l+ + + +++
  MMETSP1137-20121227|2548_1 40 MGCSAPESSGVEASSNSVTDATSQMAMVNDKKKFLNLNANLREE 83
                5**************9999**************99988777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (94 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       122  (0.0297416); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.11u 0.17s 00:00:00.28 Elapsed: 00:00:00.28
# Mc/sec: 443.11
//
Query:       MMETSP1137-20121227|2549_1  [L=131]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (131 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        90  (0.0219405); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.19s 00:00:00.34 Elapsed: 00:00:00.33
# Mc/sec: 523.96
//
Query:       MMETSP1137-20121227|2552_1  [L=470]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (470 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       137  (0.0333983); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.16s 00:00:00.49 Elapsed: 00:00:00.41
# Mc/sec: 1513.05
//
Query:       MMETSP1137-20121227|2553_1  [L=412]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (412 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        94  (0.0229157); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.11s 00:00:00.40 Elapsed: 00:00:00.41
# Mc/sec: 1326.33
//
Query:       MMETSP1137-20121227|2554_1  [L=601]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.9e-40  131.9   0.0    3.4e-09   34.2   0.0    8.9  9  TIGR00756 PPR: pentatricopeptide repeat domain


Domain annotation for each model (and alignments):
>> TIGR00756  PPR: pentatricopeptide repeat domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0      0.24     1e+03       9      26 ..     185     202 ..     183     209 .. 0.77
   2 !   16.7   0.0   3.1e-07    0.0013       2      34 ..     213     245 ..     212     246 .. 0.96
   3 !    6.1   0.0    0.0007       2.9       2      35 .]     248     281 ..     247     281 .. 0.94
   4 !   10.2   0.0   3.5e-05      0.14       1      33 [.     282     314 ..     282     316 .. 0.95
   5 !   13.2   0.0   3.8e-06     0.016       2      35 .]     369     402 ..     368     402 .. 0.91
   6 !   34.2   0.0   8.4e-13   3.4e-09       1      35 []     403     437 ..     403     437 .. 0.97
   7 !   10.0   0.0   4.1e-05      0.17       9      34 ..     446     471 ..     439     472 .. 0.95
   8 !   14.4   0.0   1.6e-06    0.0067       2      30 ..     474     502 ..     473     507 .. 0.90
   9 !   14.9   0.0   1.1e-06    0.0046       2      31 ..     509     538 ..     508     541 .. 0.94

  Alignments for each domain:
  == domain 1    score: -1.9 bits;  conditional E-value: 0.24
   TIGR00756   9 glckagrveeAlelfdeM 26 
                 ++++ g+   Al l+ ++
  MMETSP1137-20121227|2554_1 185 SCGRLGNATCALNLMSDL 202
                 799999998888887665 PP

  == domain 2    score: 16.7 bits;  conditional E-value: 3.1e-07
   TIGR00756   2 tyntlisglckagrveeAlelfdeMkergivPd 34 
                 ty +++ ++ +ag++  ++el++e++++ ++P+
  MMETSP1137-20121227|2554_1 213 TYVAVMMACKRAGKWAQVIELYEELRKQQLKPN 245
                 9*******************************9 PP

  == domain 3    score: 6.1 bits;  conditional E-value: 0.0007
   TIGR00756   2 tyntlisglckagrveeAlelfdeMkergivPda 35 
                 t n+++ +  + gr+e +l+ ++ +++rg+ Pda
  MMETSP1137-20121227|2554_1 248 TTNIVMGAARECGRWELCLSQLQGLRDRGVAPDA 281
                 789*****************************96 PP

  == domain 4    score: 10.2 bits;  conditional E-value: 3.5e-05
   TIGR00756   1 vtyntlisglckagrveeAlelfdeMkergivP 33 
                 ++y+t is++ ++ r   A  l+ +M+++ +vP
  MMETSP1137-20121227|2554_1 282 ISYSTAISACRRHTRGVQAATLLSQMEAEHLVP 314
                 59***************************9998 PP

  == domain 5    score: 13.2 bits;  conditional E-value: 3.8e-06
   TIGR00756   2 tyntlisglckagrveeAlelfdeMkergivPda 35 
                 ++++ i+  + +g++e    ++deM+ +g++Pd+
  MMETSP1137-20121227|2554_1 369 MFTAAICLRVASGEWERSAAMLDEMRGAGHEPDT 402
                 678888888999********************96 PP

  == domain 6    score: 34.2 bits;  conditional E-value: 8.4e-13
   TIGR00756   1 vtyntlisglckagrveeAlelfdeMkergivPda 35 
                 v+yn++++g+++ag++  A+ + ++M+e+g+ Pd+
  MMETSP1137-20121227|2554_1 403 VAYNAVLRGCGRAGEWQAAEAIVERMREAGLQPDS 437
                 68*******************************95 PP

  == domain 7    score: 10.0 bits;  conditional E-value: 4.1e-05
   TIGR00756   9 glckagrveeAlelfdeMkergivPd 34 
                 ++++ag+++ A+el+++ +++g+ P+
  MMETSP1137-20121227|2554_1 446 AYSNAGEWRRAVELLERVEAAGVTPT 471
                 89**********************98 PP

  == domain 8    score: 14.4 bits;  conditional E-value: 1.6e-06
   TIGR00756   2 tyntlisglckagrveeAlelfdeMkerg 30 
                 ++ + +s+++kag++ e+l+l+  M+e+g
  MMETSP1137-20121227|2554_1 474 VFGAAMSACAKAGETAEVLRLLGVMRESG 502
                 67788**********************99 PP

  == domain 9    score: 14.9 bits;  conditional E-value: 1.1e-06
   TIGR00756   2 tyntlisglckagrveeAlelfdeMkergi 31 
                 +y + ++++++a +++e+  l+ +M+++gi
  MMETSP1137-20121227|2554_1 509 CYGAAVHACFHAQMWDEVYGLLYDMRRKGI 538
                 69999************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (601 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       181  (0.0441248); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.15s 00:00:00.54 Elapsed: 00:00:00.41
# Mc/sec: 1934.77
//
Query:       MMETSP1137-20121227|2556_1  [L=689]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (689 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       123  (0.0299854); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.16s 00:00:00.57 Elapsed: 00:00:00.48
# Mc/sec: 1894.59
//
Query:       MMETSP1137-20121227|2557_1  [L=607]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (607 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        93  (0.0226719); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.18s 00:00:00.57 Elapsed: 00:00:00.59
# Mc/sec: 1357.92
//
Query:       MMETSP1137-20121227|2559_1  [L=449]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   6.3e-151  500.5   4.5   7.8e-151  500.2   3.1    1.1  1  TIGR03150 fabF: beta-ketoacyl-acyl-carrier-protein synthase II
    7.3e-24   80.4   4.2      1e-23   79.9   2.9    1.1  1  TIGR02813 omega_3_PfaA: polyketide-type polyunsaturated fatty acid synthase PfaA
      1e-10   39.0   6.9    4.4e-06   23.7   0.3    2.2  2  TIGR01930 AcCoA-C-Actrans: acetyl-CoA C-acetyltransferase
      7e-06   23.1   4.8    0.00035   17.6   0.3    2.3  2  TIGR02430 pcaF: 3-oxoadipyl-CoA thiolase


Domain annotation for each model (and alignments):
>> TIGR03150  fabF: beta-ketoacyl-acyl-carrier-protein synthase II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  500.2   3.1  7.6e-154  7.8e-151       2     407 .]      50     445 ..      49     445 .. 0.97

  Alignments for each domain:
  == domain 1    score: 500.2 bits;  conditional E-value: 7.6e-154
   TIGR03150   2 rvvvtGlGlvtplgndveetwenllagksgikkitkfdasdlkvkiagevkdfdpeeyldk.kearrldrfiqyalaaakealedagleleeedaervgvivgsGiGGletieeqakklkekgprrvsPffipsaiinlaagqvsiklglkgpnlavvtACatgthaigeaarlikegeadvmiagGaeaaitelgiagFaalkalst.rnddpekasrPfdkdrdGFvlgeGagvlvlEelehAkaRgAkiyaevvGyglsaDAyHitapaeegegaaramkaalkdaglkpeevdyinaHgtstplgdkaEtkaikkvfgehakklavsstKsmtGHlLGaaGaveavitvlaleeqvvpptinleepdeecdldyvpnkarea.kievalsnsfGFGGtnaslvlk 407
                 r+vvtG+G+v+++g++ +++w +ll+g++gi++i+ fdas+++++i +e +dfd+++++d+ k+ + +dr++++a+aaa++a++++g+ +e   ++r++++vgs  GG++t+e+q+ +l + g ++vsPf++p++++n a+g ++i+lg +gpn+ vv+ACa+gthaig+a+r++k+gead+++agG+eaa+t+++ agF+a+ka+++ +nddp+++sr          +geGag+l+lE+  hA++RgA+i++e++Gy++++DA+Hit+p++eg+g a ++++al+da++ +e+vdyinaHgtst ++dk+Et+aikkvfgeha+klavsstKsmtGH+LGaaG++ea ++v+ ++++ vpptin+++pd++cdl+yvpn+a +  k ++a+s+++GFGG+na+lv+k
  MMETSP1137-20121227|2559_1  50 RIVVTGVGVVSAVGSG-DDFWPALLQGTCGIDTIKGFDASKFPTTIGAECSDFDAKQWFDNpKNIKATDRYSHLAMAAARMAIAESGMPAEMLASDRAAILVGSAFGGMDTFEKQVLNLDK-G-KKVSPFTVPALLANTASGILAIELGCTGPNYGVVSACASGTHAIGDALRILKYGEADIVLAGGSEAAMTPFSYAGFCAMKAMCStYNDDPKASSR----------MGEGAGMLMLETESHARKRGATILCELAGYAATCDAHHITTPHPEGAGLAMCLRRALADAHVPVEDVDYINAHGTSTAYNDKFETMAIKKVFGEHASKLAVSSTKSMTGHTLGAAGGIEAAVCVKMIQTGDVPPTINYNNPDPDCDLNYVPNQAIKIeKPRAAISDNLGFGGHNAALVFK 445
                 9*************87.78***************************************9754999*************************************************9988754.4.69*******************************************************************************9544*********9..........**********************************************************************************************************************************************************8861569*****************97 PP

>> TIGR02813  omega_3_PfaA: polyketide-type polyunsaturated fatty acid synthase PfaA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.9   2.9     1e-26     1e-23     177     460 ..     178     445 ..     160     448 .. 0.86

  Alignments for each domain:
  == domain 1    score: 79.9 bits;  conditional E-value: 1e-26
   TIGR02813 177 fpGslGnvisGrianrfdlGGmncvvdaacaGslaalrlalselvegrsevmitGGvctdnspfmymsfsktpafttnediqpfdidskG.mmiGeGiGmvalkrledaerdGdriyavikGvGassdGkfksiyaprpeGq..akalkrayddaGfapktvGlieahGtGtaaGdvaefsGlssvfsqdndqkqhialGsvksqiGhtkstaGtaGlikaalalhhkvlpatinvdkpnpkldiedsplylntetrpwlqredglprraGissfGfGGtnfhlvle 460
                  p  l n  sG +a  +   G n  v +aca    a+  al  l  g ++++++GG  +  +pf y  f    a+ +  +  p     k    +GeG Gm+ l     a + G  i + + G  a+ d +   i +p peG   a  l+ra  da    + v  i+ahGt ta  d  e   +++vf +      ++a+ s ks  Ght  +aG       +  +    +p+tin ++p+p  d++  p     +     + + + pr a    +GfGG n  lv++
  MMETSP1137-20121227|2559_1 178 VPALLANTASGILAIELGCTGPNYGVVSACASGTHAIGDALRILKYGEADIVLAGGSEAAMTPFSYAGFCAMKAMCSTYNDDP-----KAsSRMGEGAGMLMLETESHARKRGATILCELAGYAATCDAHH--ITTPHPEGAglAMCLRRALADAHVPVEDVDYINAHGTSTAYNDKFETMAIKKVFGEHAS---KLAVSSTKSMTGHTLGAAGGIEAAVCVKMIQTGDVPPTINYNNPDPDCDLNYVPN----Q-----AIKIEKPRAAISDNLGFGGHNAALVFK 445
                 6999******************************************************************9999887655444.....331457**********************************976..67777776422888****************************************98765...58***********9877776555555566777889**************986663....2.....334466777666678999999888865 PP

>> TIGR01930  AcCoA-C-Actrans: acetyl-CoA C-acetyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.7   0.3   4.3e-09   4.4e-06      65     112 ..     189     236 ..     124     257 .. 0.80
   2 !   18.3   0.9   1.9e-07    0.0002     240     360 ..     263     392 ..     259     398 .. 0.80

  Alignments for each domain:
  == domain 1    score: 23.7 bits;  conditional E-value: 4.3e-09
   TIGR01930  65 alaaglpesvpaltvnrvCaSglqAvalaaqkikaGeadvvvaGGvEs 112
                 +la +l+ + p + v  +CaSg +A+ +a + +k Gead+v+aGG E 
  MMETSP1137-20121227|2559_1 189 ILAIELGCTGPNYGVVSACASGTHAIGDALRILKYGEADIVLAGGSEA 236
                 678888889999**********************************97 PP

  == domain 2    score: 18.3 bits;  conditional E-value: 1.9e-07
   TIGR01930 240 ssqlnDGAaalllmseevakelgltplarivsaavagvdp.....eemglgpvpAiekaLkkaglsisdidlvEinEAFAa.....qvlavekelgsldlekvNvnGGAiAlGHPlGasGarivltllkeL 360
                 ss + +GA++l+l +e+ a++ g t+l ++ ++a +         +  g g ++  ++aL+ a + ++d+d+++ +    a      ++a++k +g  + +k+ v      +GH lGa G++  +  +k++
  MMETSP1137-20121227|2559_1 263 SSRMGEGAGMLMLETESHARKRGATILCELAGYAATCDAHhittpHPEGAGLAMCLRRALADAHVPVEDVDYINAHGTSTAyndkfETMAIKKVFG-EHASKLAVSSTKSMTGHTLGAAGGIEAAVCVKMI 392
                 8999*****************************98864432222277789999***********************98877222223455555555.559*******9999*********98777666665 PP

>> TIGR02430  pcaF: 3-oxoadipyl-CoA thiolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.3   3.4e-07   0.00035      81     119 ..     199     237 ..     184     257 .. 0.80
   2 !    7.1   0.3   0.00051      0.53     253     369 ..     264     388 ..     260     397 .. 0.73

  Alignments for each domain:
  == domain 1    score: 17.6 bits;  conditional E-value: 3.4e-07
   TIGR02430  81 pgttvnrlcgsgldalglaaraikaGeadlviaGGvesm 119
                 p   v   c+sg +a+g a r +k Gead+v+aGG e+ 
  MMETSP1137-20121227|2559_1 199 PNYGVVSACASGTHAIGDALRILKYGEADIVLAGGSEAA 237
                 56667789***************************9973 PP

  == domain 2    score: 7.1 bits;  conditional E-value: 0.00051
   TIGR02430 253 sGvndGaaalllaseeavkrhgltprarilaaasaG.....veprvmGlgpvpavkkllaraglsledldvielneafaa.....qalavlrelgladddarvnpnGGaialGhplGasGarlvlta 369
                 s + +Ga  l+l +e  ++++g t  + + ++a++        p+  G g +   +++la a++ +ed+d i+   + +a     +++a+ + +g  + ++++         Gh lGa+G   ++  
  MMETSP1137-20121227|2559_1 264 SRMGEGAGMLMLETESHARKRGATILCELAGYAATCdahhiTTPHPEGAGLAMCLRRALADAHVPVEDVDYINAHGTSTAyndkfETMAIKKVFG--EHASKLAVSSTKSMTGHTLGAAGGIEAAVC 388
                 667899******************999999998875222324677789999999******************97654443111113455555554..566666666777778999999887555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (449 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       105  (0.0255973); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.44u 0.19s 00:00:00.63 Elapsed: 00:00:00.52
# Mc/sec: 1139.68
//
Query:       MMETSP1137-20121227|2560_1  [L=263]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      6e-17   59.6   0.0    8.1e-17   59.2   0.0    1.2  1  TIGR01622 SF-CC1: splicing factor, CC1-like family
    1.8e-11   41.7   0.0    2.6e-11   41.2   0.0    1.3  1  TIGR01628 PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family
    7.6e-09   32.4   0.0      1e-08   32.0   0.0    1.2  1  TIGR01642 U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor
      9e-07   25.9   0.1    2.7e-06   24.3   0.0    1.7  2  TIGR01648 hnRNP-R-Q: hnRNP-R, Q splicing factor family


Domain annotation for each model (and alignments):
>> TIGR01622  SF-CC1: splicing factor, CC1-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.2   0.0   7.9e-20   8.1e-17     134     320 ..      44     224 ..      17     251 .. 0.79

  Alignments for each domain:
  == domain 1    score: 59.2 bits;  conditional E-value: 7.9e-20
   TIGR01622 134 RdlkEFFskvgkvrdvrlikDr...nSrrSkGvaYvEFydvesvqlAlaltGqkllgvPvivqaseAEKNraakaatelsgdipnsiadlkLYvGnlhfnitEqeLrqiFepFGeielvqlqkDpetGrskGyGFiqFsdae....eakeAleklNGlelAGReikvglasDvteesdaslaskfedsfdeseq 320
                  d+k+FF   gk r v          +   + va + F++++  ++Al+ltG +l g+ v+v +         +  ++++   p   +  +++vGnl f+  + +++++F + G++++v++  D ++ + +G+  + F+d +     a++Al +l G +l GR++kv+ a ++ +++     ++++++ +e ++
  MMETSP1137-20121227|2560_1  44 ADIKDFFAACGKPRAVYNKWGEelgDADNVREVAILTFKKNKCCTKALGLTGTQLAGREVVVGLNTR----PFQ--KRVQ---P--KTSIRVFVGNLPFDADDASIKEMFAACGRVLFVRFATDADG-KNRGFCHVIFEDPDgtgdPAHKAL-QLDGADLKGRPVKVAPAIEHEKQKRPPKRQQQAQHAQEAQE 224
                 68999999999988886544331114567899******************************98642....222..3344...3..35689*********************************997.***********9652111567776.79**************9998888887555555553333333 PP

>> TIGR01628  PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.2   0.0   2.5e-14   2.6e-11      49     171 ..      81     207 ..      75     248 .. 0.81

  Alignments for each domain:
  == domain 1    score: 41.2 bits;  conditional E-value: 2.5e-14
   TIGR01628  49 fqnladAerAldtlnyknlkgkpiRlmwsqRdPslRksGvgN..ifvKnLdksidnkaLfdtFskfGnilsckvatdeeGkSkgYgfvhfedees....AkeAieklNgvllndkevyvgkfikksere 171
                 f++++   +Al   + + l g+ + + ++ R  ++R   ++   +fv nL+ + d ++++++F + G++l ++ atd +Gk +g+  v fed +     A++A++ l g+ l+ + v+v++ i++++++
  MMETSP1137-20121227|2560_1  81 FKKNKCCTKALGLTGTQ-LAGREVVVGLNTRPFQKRVQPKTSirVFVGNLPFDADDASIKEMFAACGRVLFVRFATDADGKNRGFCHVIFEDPDGtgdpAHKALQ-LDGADLKGRPVKVAPAIEHEKQK 207
                 66677777888766655.999999999999999999888875226999999999999999999999999999999999999999999999986542222777775.89999999999999999887765 PP

>> TIGR01642  U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.0   0.0   9.8e-12     1e-08     291     394 ..     116     221 ..      90     232 .. 0.84

  Alignments for each domain:
  == domain 1    score: 32.0 bits;  conditional E-value: 9.8e-12
   TIGR01642 291 tvldsedklyignLPldlkddqvkeLLesFGdLkaFnliKdlatGlsKGyaFceykdssvt.dlAiaa..LnGiklgdkkLnvkrAtvgakqatiekensdvlvtll 394
                 + +    ++++gnLP+d +d  +ke+    G ++      d a+G+++G++ + ++d+  t d A +a  L+G +l ++ ++v  A+   kq  + k + ++  ++ 
  MMETSP1137-20121227|2560_1 116 VQPKTSIRVFVGNLPFDADDASIKEMFAACGRVLFVRFATD-ADGKNRGFCHVIFEDPDGTgDPAHKAlqLDGADLKGRPVKVAPAIEHEKQKRPPKRQQQAQHAQE 221
                 55666779*************************98887776.79**************98746777773369****************9999999888877766654 PP

>> TIGR01648  hnRNP-R-Q: hnRNP-R, Q splicing factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.3   0.0   2.6e-09   2.7e-06      51     107 ..     114     170 ..     108     184 .. 0.92
   2 ?   -2.0   0.0      0.24   2.4e+02     288     320 ..     184     214 ..     174     234 .. 0.56

  Alignments for each domain:
  == domain 1    score: 24.3 bits;  conditional E-value: 2.6e-09
   TIGR01648  51 egaqPerGcevfvGkiPrdlyedelvPlfekvGkiyelrlmmdldGknrGyafvtfc 107
                 + +qP+    vfvG +P d  +  +  +f   G++  +r+  d dGknrG+  v+f 
  MMETSP1137-20121227|2560_1 114 KRVQPKTSIRVFVGNLPFDADDASIKEMFAACGRVLFVRFATDADGKNRGFCHVIFE 170
                 5689****************999999****************************996 PP

  == domain 2    score: -2.0 bits;  conditional E-value: 0.24
   TIGR01648 288 elnGkeleGseievtlakPvdkesyvrytkaak 320
                 +l+G +l+G ++ v+ a   +k++     k  +
  MMETSP1137-20121227|2560_1 184 QLDGADLKGRPVKVAPAIEHEKQKRP--PKRQQ 214
                 57888888888888877666666332..22222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (263 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       114  (0.0277913); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.27u 0.14s 00:00:00.41 Elapsed: 00:00:00.45
# Mc/sec: 771.40
//
Query:       MMETSP1137-20121227|2561_1  [L=200]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (200 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        59  (0.0143832); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.12s 00:00:00.30 Elapsed: 00:00:00.31
# Mc/sec: 851.54
//
Query:       MMETSP1137-20121227|2563_1  [L=82]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (82 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       114  (0.0277913); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.28
# Mc/sec: 386.54
//
Query:       MMETSP1137-20121227|2564_1  [L=221]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.2e-10   36.9   0.0    6.7e-10   36.5   0.0    1.0  1  TIGR01628 PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family
    9.5e-07   26.0   0.0    1.5e-06   25.3   0.0    1.3  1  TIGR01622 SF-CC1: splicing factor, CC1-like family
     0.0045   13.4   0.0     0.0058   13.0   0.0    1.1  1  TIGR01642 U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor
     0.0056   14.1   0.0     0.0077   13.7   0.0    1.2  1  TIGR01661 ELAV_HUD_SF: ELAV/HuD family splicing factor
  ------ inclusion threshold ------
      0.013   13.0   0.2      0.018   12.5   0.2    1.2  1  TIGR01659 sex-lethal: sex-lethal family splicing factor


Domain annotation for each model (and alignments):
>> TIGR01628  PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.5   0.0   8.2e-13   6.7e-10      89     161 ..      76     148 ..      56     152 .. 0.71

  Alignments for each domain:
  == domain 1    score: 36.5 bits;  conditional E-value: 8.2e-13
   TIGR01628  89 gNifvKnLdksidnkaLfdtFskfGnilsckvatdeeGkSkgYgfvhfedeesAkeAieklNgvllndkevyv 161
                 + +fv nL+ s+d k+L+      G+++   va  ++G+S+g+g v+  + ++A++Ai+    + l+ + ++v
  MMETSP1137-20121227|2564_1  76 TSVFVGNLPWSVDWKTLKSHLRDAGEVVRADVASGDDGRSRGFGIVEXANPKAARKAIQMFHETELEGRTIIV 148
                 4677777777777777777777777777777777777777777777777777777777777777666666655 PP

>> TIGR01622  SF-CC1: splicing factor, CC1-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.3   0.0   1.8e-09   1.5e-06     218     294 ..      74     149 ..      57     156 .. 0.92

  Alignments for each domain:
  == domain 1    score: 25.3 bits;  conditional E-value: 1.8e-09
   TIGR01622 218 adlkLYvGnlhfnitEqeLrqiFepFGeielvqlqkDpetGrskGyGFiqFsdaeeakeAleklNGlelAGReikvg 294
                 +d+ ++vGnl  ++  + L+      Ge+   ++   +++ rs+G+G ++  + + a++A++ +   el GR+i v 
  MMETSP1137-20121227|2564_1  74 SDTSVFVGNLPWSVDWKTLKSHLRDAGEVVRADVASGDDG-RSRGFGIVEXANPKAARKAIQMFHETELEGRTIIVR 149
                 56789******************************99987.*********************************885 PP

>> TIGR01642  U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   0.0   7.1e-06    0.0058     290     371 ..      69     149 ..      51     154 .. 0.88

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 7.1e-06
   TIGR01642 290 ktvldsedklyignLPldlkddqvkeLLesFGdLkaFnliKdlatGlsKGyaFceykdssvtdlAiaaLnGiklgdkkLnvk 371
                 +++  s+  +++gnLP  ++ + +k  L++ G++   + +   ++G s+G++ +e  ++  +  Ai+     +l ++++ v+
  MMETSP1137-20121227|2564_1  69 RSGGGSDTSVFVGNLPWSVDWKTLKSHLRDAGEVVRAD-VASGDDGRSRGFGIVEXANPKAARKAIQMFHETELEGRTIIVR 149
                 555667788************************98887.56789**********************9999888888888776 PP

>> TIGR01661  ELAV_HUD_SF: ELAV/HuD family splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   0.0   9.4e-06    0.0077       4      78 ..      76     149 ..      73     160 .. 0.83

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 9.4e-06
   TIGR01661   4 tnlivnylPqtmtqeeirslftsiGeiescklvrdkvtGqslGyGfvnyvreedaekavnslnGlrlqnktikvs 78 
                 t + v  lP ++  + ++s +   Ge+  + +      G+s G+G v+  +++ a ka++ +    l  +ti v 
  MMETSP1137-20121227|2564_1  76 TSVFVGNLPWSVDWKTLKSHLRDAGEVVRADV-ASGDDGRSRGFGIVEXANPKAARKAIQMFHETELEGRTIIVR 149
                 67777888888888888888888888876654.44557*********************************9886 PP

>> TIGR01659  sex-lethal: sex-lethal family splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.2   2.2e-05     0.018     184     287 ..      68     164 ..      58     197 .. 0.66

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 2.2e-05
   TIGR01659 184 arpggesikdtnlyvtnlprtitddqldtifgkygsivqknilrdkltgkprgvafvrfnkreeaqeaisalnnvipeggsqpltvrlaeehgkakaahymskl 287
                 ar gg s  dt ++v nlp ++  + l++ +   g++v+ ++      g+ rg  +v     + a++ai  + +   eg     t+ + e+ g a ++     +
  MMETSP1137-20121227|2564_1  68 ARSGGGS--DTSVFVGNLPWSVDWKTLKSHLRDAGEVVRADVAS-GDDGRSRGFGIVEXANPKAARKAIQMFHETELEGR----TIIVREDRGDAGGERRGGGF 164
                 6666665..88888888888888888888888888888877765.45688888888888888888888877776666664....45555677776666544444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (221 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        54  (0.0131643); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.23u 0.14s 00:00:00.37 Elapsed: 00:00:00.38
# Mc/sec: 767.62
//
Query:       MMETSP1137-20121227|2565_1  [L=420]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (420 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       123  (0.0299854); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.13s 00:00:00.44 Elapsed: 00:00:00.46
# Mc/sec: 1205.12
//
Query:       MMETSP1137-20121227|2566_1  [L=283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.011   13.3   0.0      0.015   12.9   0.0    1.1  1  TIGR01491 HAD-SF-IB-PSPlk: phosphoserine phosphatase-like hydrolase, archaeal


Domain annotation for each model (and alignments):
>> TIGR01491  HAD-SF-IB-PSPlk: phosphoserine phosphatase-like hydrolase, archaeal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   3.6e-06     0.015      32      92 ..      86     146 ..      75     157 .. 0.84

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 3.6e-06
   TIGR01491  32 eeeakknaelfesGsisYeewlrlDvelWlrasgrlkreevaeilkeiklrdeaeevvrlL 92 
                 +e++ k  +l+e+ +    e +r  +++W+r +g   r++++ i+  ++l   +e v++ L
  MMETSP1137-20121227|2566_1  86 NEQSVKILDLHEHATEGCVELIRHAASAWMREEGSYYRDDITAIVTKLPLLPMSEGVLEAL 146
                 4556778888888888899*****************************9988887776655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (283 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        61  (0.0148708); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.22u 0.19s 00:00:00.41 Elapsed: 00:00:00.33
# Mc/sec: 1131.91
//
Query:       MMETSP1137-20121227|2567_1  [L=151]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (151 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        84  (0.0204778); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.15s 00:00:00.32 Elapsed: 00:00:00.25
# Mc/sec: 797.21
//
Query:       MMETSP1137-20121227|2568_1  [L=37]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (37 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        24  (0.0058508); expected 82.0 (0.02)
Passed bias filter:                       20  (0.00487567); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.13s 00:00:00.24 Elapsed: 00:00:00.24
# Mc/sec: 203.48
//
Query:       MMETSP1137-20121227|2568_2  [L=148]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (148 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        32  (0.00780107); expected 82.0 (0.02)
Passed bias filter:                       28  (0.00682594); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.16s 00:00:00.33 Elapsed: 00:00:00.36
# Mc/sec: 542.62
//
Query:       MMETSP1137-20121227|2569_1  [L=332]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      0.005   13.8   0.4      0.005   13.8   0.3    2.4  2  TIGR00820 zip: ZIP zinc/iron transport family
  ------ inclusion threshold ------
        3.1    3.9  14.0        5.1    3.2   9.7    1.2  1  TIGR02442 Cob-chelat-sub: cobaltochelatase subunit


Domain annotation for each model (and alignments):
>> TIGR00820  zip: ZIP zinc/iron transport family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -6.7   9.2         2   4.1e+03     126     145 ..     182     211 ..     148     242 .. 0.46
   2 !   13.8   0.3   2.4e-06     0.005       4      82 ..     244     322 ..     241     331 .. 0.89

  Alignments for each domain:
  == domain 1    score: -6.7 bits;  conditional E-value: 2
   TIGR00820 126 dagseeikvv...dgeeeeaga.......d 145
                 d+ +++ +++   d+ee++ ++       +
  MMETSP1137-20121227|2569_1 182 DHDHDHEEDGhdhDHEEDDHDHeeddhdhE 211
                 333333333322211111111111111110 PP

  == domain 2    score: 13.8 bits;  conditional E-value: 2.4e-06
   TIGR00820   4 edaaseeekekalklkivaifvillasvigvllPLlskkvkalrletklflvvkaFaaGvilatgfvHvlpeafealss 82 
                 ed+++  +k++a+    +a +v++l + igv++ +  kk++   + + +  +v aFaaG +la +   +l e+   + s
  MMETSP1137-20121227|2569_1 244 EDEQADINKDEAFGKAAAACVVVMLITLIGVTTLVPCKKFNGFLIGGWFEGLVAAFAAGALLAVTVFLLLSESLHLVGS 322
                 5666788999***********************999***************************9999999999877665 PP

>> TIGR02442  Cob-chelat-sub: cobaltochelatase subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   9.7    0.0025       5.1     321     378 ..     178     249 ..     163     269 .. 0.35

  Alignments for each domain:
  == domain 1    score: 3.2 bits;  conditional E-value: 0.0025
   TIGR02442 321 keekkleekkeeakpdeekedes..eekekeeskkqe............eeepgkddekeedekeeaeeeae 378
                 ++++++++ +ee+++d+++e+++  +e++++++++++             +e+++dd++++de++ ++e+a 
  MMETSP1137-20121227|2569_1 178 HDDDDHDHDHEEDGHDHDHEEDDhdHEEDDHDHEEDGhdhdheeegddhVHEDEEDDHEHDDEHAXEDEQAD 249
                 334444444444443333333331112222111111111110001111111222222222222222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (332 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       183  (0.0446124); expected 82.0 (0.02)
Passed bias filter:                      108  (0.0263286); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.35u 0.18s 00:00:00.53 Elapsed: 00:00:00.54
# Mc/sec: 811.49
//
Query:       MMETSP1137-20121227|2570_1  [L=284]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.9e-53  178.8   1.6    3.4e-53  178.6   1.1    1.0  1  TIGR00846 caca2: calcium/proton exchanger
    3.1e-51  172.5   3.4      4e-51  172.1   2.3    1.1  1  TIGR00378 cax: calcium/proton exchanger


Domain annotation for each model (and alignments):
>> TIGR00846  caca2: calcium/proton exchanger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  178.6   1.1   1.6e-56   3.4e-53       3     230 ..      52     282 ..      50     284 .] 0.92

  Alignments for each domain:
  == domain 1    score: 178.6 bits;  conditional E-value: 1.6e-56
   TIGR00846   3 llsnaqevllaskleilliavplaiilalvgvsqtlvfllallgiiplAavvsrateeLaarlGetlGgllnatvgnavelIisllalkegkvevvrasllgsilsnlllvlGlslllGGiknir........veqefdlkaaqvnlallllailslvlPallkaaknseksaevqdsklelsvgiaivllilYvvfLvfqlvtHrelFeaeeeadsevddevkeeptvlsslsaa 230
                 ++  ++++l +s+l+ ll+ vp a+ ++ +++s +++f  ++l+i+plA  ++ ate+La ++ et+Ggllnat+gna+elI+  +al  g  +vv+ sllgsilsn+llvlG + l  G+k  +        ++ +f+l aa+ n +ll++ +lsl +Pa+l+++ +    +++ +  l +s+g++i+ll+lY++++ fql tHr lFea++++d+ +dd+   ++  ls   a+
  MMETSP1137-20121227|2570_1  52 FFKGSRDMLCKSWLNSLLVSVPFALAIGAMELSPAATFITSCLAILPLAGLLGDATEQLASHTNETIGGLLNATFGNATELIVCCFALYRGLLSVVQISLLGSILSNTLLVLGCACLTAGLKPSQeeatrgslIQVRFNLVAAKSNATLLMISVLSLCVPAMLQMVGQI---EQLGSEDLVISRGMSIMLLLLYCMYIHFQLNTHRFLFEADNDDDDGDDDDD--DDVHLSLTGAL 282
                 6667889999***************************************************************************************************************988789999**9******************************998886...5666789***********************************997655554..33245555555 PP

>> TIGR00378  cax: calcium/proton exchanger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  172.1   2.3   1.9e-54     4e-51       1     196 [.      68     273 ..      68     283 .. 0.88

  Alignments for each domain:
  == domain 1    score: 172.1 bits;  conditional E-value: 1.9e-54
   TIGR00378   1 llvfvPlsliasllqlsetvvfllaflaiiplaaflgrateelavvaGpriGGllnatfGnavelivslialkeGlveivkasltGsvlgnlllvlGlafflGGlkykeqe..........fnqlaarlnssllalavvalliPaalevlsvGvee.akllnlsvgvsivlilvyvlalyfklgthralyevqeaeqtevmeeiede 196
                 llv vP++l+ + ++ls + +f+  +lai+pla +lg ate+la    ++iGGllnatfGna+eliv+ +al +Gl+ +v+ sl+Gs+l+n llvlG a +  Glk  + e          fn  aa+ n++ll+++v +l +Pa l+++ +  +  ++ l +s+g+si+l+l+y + + f+l thr l+e ++++++   +  +d+
  MMETSP1137-20121227|2570_1  68 LLVSVPFALAIGAMELSPAATFITSCLAILPLAGLLGDATEQLASHTNETIGGLLNATFGNATELIVCCFALYRGLLSVVQISLLGSILSNTLLVLGCACLTAGLKPSQEEatrgsliqvrFNLVAAKSNATLLMISVLSLCVPAMLQMVGQIEQLgSEDLVISRGMSIMLLLLYCMYIHFQLNTHRFLFEADNDDDDGDDDD-DDD 273
                 799******************************************************************************************************9765433333333334***********************9999886644434677899*****************************99988766333.444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (284 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       107  (0.0260848); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.24u 0.17s 00:00:00.41 Elapsed: 00:00:00.48
# Mc/sec: 780.94
//
Query:       MMETSP1137-20121227|2571_1  [L=258]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      1e-49  167.5   0.0    1.2e-49  167.3   0.0    1.0  1  TIGR00442 hisS: histidine--tRNA ligase
    1.1e-32  111.2   0.0    1.4e-32  110.9   0.0    1.1  1  TIGR00443 hisZ_biosyn_reg: ATP phosphoribosyltransferase, regulatory subunit
    4.9e-06   23.9   0.0    6.6e-06   23.5   0.0    1.1  1  TIGR02367 PylS_Cterm: pyrrolysine--tRNA ligase, C-terminal region
    0.00074   16.3   0.0    0.00095   16.0   0.0    1.0  1  TIGR00418 thrS: threonine--tRNA ligase
     0.0033   13.7   0.0     0.0048   13.2   0.0    1.2  1  TIGR00470 sepS: O-phosphoseryl-tRNA(Cys) synthetase
  ------ inclusion threshold ------
      0.054   10.3   0.0      0.074    9.9   0.0    1.1  1  TIGR00414 serS: serine--tRNA ligase


Domain annotation for each model (and alignments):
>> TIGR00442  hisS: histidine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  167.3   0.0   1.7e-52   1.2e-49       2     188 ..      66     255 ..      65     258 .] 0.92

  Alignments for each domain:
  == domain 1    score: 167.3 bits;  conditional E-value: 1.7e-52
   TIGR00442   2 aprGtrDllpeeaekrqkveetirevfesygfeeietPilEktellkrkvGeetdivekemYsfedkggrslaLRpelTapvvRavvenklelkkpfklyyigpvFRyErpqkGRyRqFhQldvevvGsespladaeiialaaelleelglke..vtleinslgilegrle...ls..yreallryldkkldkl 188
                 +prGtrD++pe++++r++++ + r++++ +gfee + P+lE+ +l+ rk Ge+   v++++Y++ed++gr+laLRpe+T +++R+v+ ++++l+ p+k+++i +++RyEr  +GR R+++Q +++v G   ++a+ae+++   ++++++gl++  v ++++s+g+l+++l+   +   + +a + ++dk ldkl
  MMETSP1137-20121227|2571_1  66 PPRGTRDFYPEDMALRNWLFGQWRRIASLHGFEEYDAPVLETEDLYIRKAGED---VSQQLYNMEDRSGRRLALRPEMTPSLARMVLARQKSLTLPLKWFSIPQCWRYERTTRGRRREHYQWNMDVWGVGGIQAEAELLSASVSFMRSVGLTSaeVGVKVSSRGVLAELLTklgVPddRFAATCVLVDK-LDKL 255
                 79************************************************999...99*********************************************************************************************887899***********999655225444555555555.6665 PP

>> TIGR00443  hisZ_biosyn_reg: ATP phosphoribosyltransferase, regulatory subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  110.9   0.0   2.1e-35   1.4e-32       1     168 [.      71     241 ..      71     254 .. 0.95

  Alignments for each domain:
  == domain 1    score: 110.9 bits;  conditional E-value: 2.1e-35
   TIGR00443   1 rdvlpeeaakkeeierkleklfaswGYqeietPvlEylevllaklg.dleekvfklvdskgrvLaLRpdmTasiaRavstrlkdqelplRlsyagkvfraeekergksreftQvGvEliGaksleaDaEvialaleaLealgl..kelkvelGhvglvrelleelglpeea 168
                 rd+ pe++a ++++  + +++ + +G++e + PvlE+++++ +k g d +++++ + d++gr LaLRp+mT+s+aR+v +r k+ +lpl+     + +r+e++ rg+ re +Q  + + G+ +++a+aE+++  + +++++gl   e+ v+++  g++ ell++lg+p++ 
  MMETSP1137-20121227|2571_1  71 RDFYPEDMALRNWLFGQWRRIASLHGFEEYDAPVLETEDLYIRKAGeDVSQQLYNMEDRSGRRLALRPEMTPSLARMVLARQKSLTLPLKWFSIPQCWRYERTTRGRRREHYQWNMDVWGVGGIQAEAELLSASVSFMRSVGLtsAEVGVKVSSRGVLAELLTKLGVPDDR 241
                 89********************************************9************************************************************************************************555667899************9999765 PP

>> TIGR02367  PylS_Cterm: pyrrolysine--tRNA ligase, C-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.5   0.0   9.6e-09   6.6e-06      42     162 ..      95     216 ..      82     227 .. 0.86

  Alignments for each domain:
  == domain 1    score: 23.5 bits;  conditional E-value: 9.6e-09
   TIGR02367  42 rGfvevkspiliske.llekmtideddelfkqvfrvdekkclrpmlapnlynllrkldrllekpirifeiGscyrkesdGsehleeftmlnlvelGspeeerrerleelikevleelGidey 162
                 +Gf e  +p+l + + ++ k + d  ++l++   r  ++  lrp ++p+l  ++   ++ l  p++ f i +c+r e        e    n+  +G    + + +l +   +++  +G+   
  MMETSP1137-20121227|2571_1  95 HGFEEYDAPVLETEDlYIRKAGEDVSQQLYNMEDRSGRRLALRPEMTPSLARMVLARQKSLTLPLKWFSIPQCWRYERTTRGRRREHYQWNMDVWGVGGIQAEAELLSASVSFMRSVGLTSA 216
                 6999999999988763678888887888888888888899*****************************************999************98778888888888888888888655 PP

>> TIGR00418  thrS: threonine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0   1.4e-06   0.00095     192     297 ..      69     172 ..      57     177 .. 0.91

  Alignments for each domain:
  == domain 1    score: 16.0 bits;  conditional E-value: 1.4e-06
   TIGR00418 192 GlvlwlpkGalirklledfvrekllkrgyeevetPiladlelweisghldkykermfrfkeeeekelvlkpmnCpghilifksslrsyrdLPlrlaelgvvhRyEk 297
                 G   ++p+   +r+ l   +r+  +  g+ee  +P+l   +l+ i++  +  +++ ++++  + ++l+l+p   p   ++   +++s   LPl++  + +++RyE 
  MMETSP1137-20121227|2571_1  69 GTRDFYPEDMALRNWLFGQWRRIASLHGFEEYDAPVLETEDLY-IRKAGEDVSQQLYNMEDRSGRRLALRPEMTPSLARMVLARQKSL-TLPLKWFSIPQCWRYER 172
                 677799999***************************9877766.88899999*************************99999999997.7***************7 PP

>> TIGR00470  sepS: O-phosphoseryl-tRNA(Cys) synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   0.0   7.1e-06    0.0048     154     223 ..     104     174 ..      99     186 .. 0.82

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 7.1e-06
   TIGR00470 154 alevedetglkvleevfpefkdlkpvss.tltlrshmtsGwfitlssiadklklplklfsidrcfrreqke 223
                 +le ed    k  e+v  ++ ++   s+ +l+lr  mt      +   ++ l lplk fsi +c+r e+  
  MMETSP1137-20121227|2571_1 104 VLETEDLYIRKAGEDVSQQLYNMEDRSGrRLALRPEMTPSLARMVLARQKSLTLPLKWFSIPQCWRYERTT 174
                 67777777777778888888888888873699******9999888889999***************99764 PP

>> TIGR00414  serS: serine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.0   0.00011     0.074     189     271 ..      94     177 ..      79     182 .. 0.88

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 0.00011
   TIGR00414 189 kkgysevvvPvlvnke.llsgtgqlpkfeedifkveded...lyLiaTaEvplanlhaneileeeelpikyaavspcFRkEAGsaGk 271
                  +g++e+ +Pvl  ++ ++++ g  ++  ++++++ed     l+L +     la ++  +  ++ +lp+k  ++ +c+R E  ++G+
  MMETSP1137-20121227|2571_1  94 LHGFEEYDAPVLETEDlYIRKAG--EDVSQQLYNMEDRSgrrLALRPEMTPSLARMVLARQKSL-TLPLKWFSIPQCWRYERTTRGR 177
                 589*********99996778888..8899********988789999999999999998887776.99**************999988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (258 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        89  (0.0216967); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.25u 0.16s 00:00:00.41 Elapsed: 00:00:00.36
# Mc/sec: 945.92
//
Query:       MMETSP1137-20121227|2572_1  [L=767]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (767 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        50  (0.0121892); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.16s 00:00:00.60 Elapsed: 00:00:00.44
# Mc/sec: 2300.81
//
Query:       MMETSP1137-20121227|2573_1  [L=55]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        44  (0.0107265); expected 82.0 (0.02)
Passed bias filter:                       40  (0.00975134); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.38
# Mc/sec: 191.04
//
Query:       MMETSP1137-20121227|2574_1  [L=261]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (261 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        97  (0.023647); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.14s 00:00:00.36 Elapsed: 00:00:00.37
# Mc/sec: 931.06
//
Query:       MMETSP1137-20121227|2575_1  [L=201]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (201 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        62  (0.0151146); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.17s 00:00:00.36 Elapsed: 00:00:00.31
# Mc/sec: 855.80
//
Query:       MMETSP1137-20121227|2577_1  [L=168]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.047    9.7   0.0      0.047    9.7   0.0    1.0  1  TIGR00844 c_cpa1: sodium/hydrogen antiporter


Domain annotation for each model (and alignments):
>> TIGR00844  c_cpa1: sodium/hydrogen antiporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.0   1.1e-05     0.047     446     482 ..      15      51 ..       4     160 .. 0.58

  Alignments for each domain:
  == domain 1    score: 9.7 bits;  conditional E-value: 1.1e-05
   TIGR00844 446 ltaapttrtastntknswlqrlpsldksgrsfslqrl 482
                 ++a+ t rt+++++  +wl+  p+l+k gr      +
  MMETSP1137-20121227|2577_1  15 MLATTTLRTSAHTSSRAWLKASPALEKRGRGGEQASI 51 
                 5678899999999999*************97554332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (168 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        93  (0.0226719); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.18u 0.17s 00:00:00.35 Elapsed: 00:00:00.36
# Mc/sec: 615.95
//
Query:       MMETSP1137-20121227|2579_1  [L=278]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      0.001   14.7  15.6     0.0013   14.3  10.8    1.0  1  TIGR02168 SMC_prok_B: chromosome segregation protein SMC
  ------ inclusion threshold ------
      0.029    9.8  10.9       0.04    9.4   7.6    1.1  1  TIGR02169 SMC_prok_A: chromosome segregation protein SMC


Domain annotation for each model (and alignments):
>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3  10.8   6.5e-07    0.0013     760     908 ..     110     264 ..      84     272 .. 0.55

  Alignments for each domain:
  == domain 1    score: 14.3 bits;  conditional E-value: 6.5e-07
   TIGR02168 760 eleeereeleeeleeaeeelkeaeeeieeleaeieqlkeelkalrealseleaeltelkeeaaeke......erleslekeiaalekeleeleeqieeleeeiesleaeieeleeeleeleeeleellkekasleealaelreeleelseelrel 908
                 +l +  +e +++le ++++ k+ +++ +el a+ +++ ++ +a +e++sele+ ++ + e+a++++      ++ + +e ++ +l+++l++ e+q ++ +++++s+ea+ + + +e ++l++e+++l   +++++ea   l+++l+e++++l  +
  MMETSP1137-20121227|2579_1 110 SLMDTLSERDAALERSKATVKQLKAREAELVASGRRAVSDSTAATERISELESIVNLHGEDASRAQslttiqQGTRINELQAXSLQTQLRQSEQQVAKXSAKLSSAEASAAPTLAENAQLRAEVTHLRTLRTRSDEAATVLQAHLDETRKQLAHV 264
                 44444555555555555555666666666666666666666666666666666655444444433201000022333344455555556666666666666666666665555555566666666666666666666666666666666665554 PP

>> TIGR02169  SMC_prok_A: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   7.6     2e-05      0.04     671     825 ..     123     257 ..      99     272 .. 0.37

  Alignments for each domain:
  == domain 1    score: 9.4 bits;  conditional E-value: 2e-05
   TIGR02169 671 asekeklerlrerleeLereleslqselrriekrldelssklsdaekkieeiekeleqleeeeeklkerleeleeklseleeeleekkeelkeleaeieeleeklaklkealedleaelseekieeieeelekleeevsriearleeieaelnkl 825
                 ++ k+ +++l++r+ eL ++  ++ s+ + + +r++el+s ++   +  ++++  l ++++  + ++ ++  l+++l++ e+++++  ++l + ea  +   ++ a+l++++ +l                    + + r ++++  ++a+l++ 
  MMETSP1137-20121227|2579_1 123 ERSKATVKQLKAREAELVASGRRAVSDSTAATERISELESIVNLHGEDASRAQ-SLTTIQQGTRINELQAXSLQTQLRQSEQQVAKXSAKLSSAEASAAPTLAENAQLRAEVTHLR-------------------TLRTRSDEAATVLQAHLDET 257
                 22233333333333333333333333333333333333332222222222222.22233333333333333333444444444444444444444444433333334443333333...................33333333333333322222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (278 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       230  (0.0560702); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.24u 0.15s 00:00:00.39 Elapsed: 00:00:00.44
# Mc/sec: 833.93
//
Query:       MMETSP1137-20121227|2580_1  [L=757]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (757 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        87  (0.0212092); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.15s 00:00:00.61 Elapsed: 00:00:00.54
# Mc/sec: 1850.29
//
Query:       MMETSP1137-20121227|2581_1  [L=2255]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (2255 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       104  (0.0253535); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 1.21u 0.17s 00:00:01.38 Elapsed: 00:00:01.06
# Mc/sec: 2807.88
//
Query:       MMETSP1137-20121227|2582_1  [L=453]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (453 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        60  (0.014627); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.15s 00:00:00.44 Elapsed: 00:00:00.37
# Mc/sec: 1615.97
//
Query:       MMETSP1137-20121227|2583_1  [L=143]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (143 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       120  (0.029254); expected 82.0 (0.02)
Passed bias filter:                      110  (0.0268162); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.16s 00:00:00.34 Elapsed: 00:00:00.28
# Mc/sec: 674.09
//
Query:       MMETSP1137-20121227|2584_1  [L=782]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.3e-78  260.5   1.4    4.3e-71  238.1   0.0    2.2  2  TIGR00955 3a01204: pigment precursor permease
    2.5e-55  185.6   4.0    7.2e-55  184.1   0.0    2.4  1  TIGR00956 3a01205: pleiotropic drug resistance family protein
    2.8e-27   93.6   0.0    4.2e-27   93.0   0.0    1.1  1  TIGR01188 drrA: daunorubicin resistance ABC transporter, ATP-binding protein
    9.1e-27   92.0   0.0    1.3e-26   91.5   0.0    1.2  1  TIGR02857 CydD: thiol reductant ABC exporter, CydD subunit
    3.4e-26   89.9   0.0    5.2e-26   89.3   0.0    1.1  1  TIGR03258 PhnT: 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT
    1.3e-25   88.2   0.0    1.9e-25   87.7   0.0    1.2  1  TIGR01184 ntrCD: nitrate ABC transporter, ATP-binding proteins C and D
    3.1e-25   86.8   0.0    4.9e-25   86.2   0.0    1.1  1  TIGR03864 PQQ_ABC_ATP: ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system
    3.4e-25   86.7   0.0    4.3e-24   83.1   0.0    2.1  1  TIGR02315 ABC_phnC: phosphonate ABC transporter, ATP-binding protein
    1.7e-24   84.3   0.0      5e-24   82.7   0.0    1.7  1  TIGR03608 L_ocin_972_ABC: putative bacteriocin export ABC transporter, lactococcin 972 group
    2.6e-24   83.7   0.0    4.2e-24   83.0   0.0    1.2  1  TIGR03873 F420-0_ABC_ATP: proposed F420-0 ABC transporter, ATP-binding protein
    1.2e-23   81.7   0.0    2.5e-23   80.7   0.0    1.4  1  TIGR02982 heterocyst_DevA: ABC exporter ATP-binding subunit, DevA family
    3.4e-23   80.2   0.0    5.3e-23   79.6   0.0    1.2  1  TIGR00968 3a0106s01: sulfate ABC transporter, ATP-binding protein
    4.8e-23   79.6   0.0    7.7e-23   78.9   0.0    1.2  1  TIGR00972 3a0107s01c2: phosphate ABC transporter, ATP-binding protein
      1e-22   78.7   0.0    1.5e-22   78.1   0.0    1.2  1  TIGR03265 PhnT2: putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein
    2.5e-22   76.7   0.0    3.7e-22   76.2   0.0    1.2  1  TIGR00958 3a01208: antigen peptide transporter 2
    9.5e-22   75.5   0.0    1.4e-21   75.0   0.0    1.2  1  TIGR02673 FtsE: cell division ATP-binding protein FtsE
    1.2e-20   71.4   0.0      2e-13   47.5   0.0    2.1  2  TIGR01842 type_I_sec_PrtD: type I secretion system ATPase
    2.1e-20   70.4   0.0    3.6e-20   69.6   0.0    1.3  1  TIGR03375 type_I_sec_LssB: type I secretion system ATPase
    2.7e-20   70.7   0.0      4e-20   70.1   0.0    1.2  1  TIGR01277 thiQ: thiamine ABC transporter, ATP-binding protein
    3.5e-20   70.3   0.0      2e-12   44.9   0.0    2.1  2  TIGR02211 LolD_lipo_ex: lipoprotein releasing system, ATP-binding protein
      1e-19   68.8   0.0    1.7e-19   68.1   0.0    1.2  1  TIGR02142 modC_ABC: molybdate ABC transporter, ATP-binding protein
    1.6e-19   68.2   0.0    2.6e-19   67.5   0.0    1.2  1  TIGR01189 ccmA: heme ABC exporter, ATP-binding protein CcmA
    2.6e-19   67.1   0.0    4.8e-19   66.2   0.0    1.3  1  TIGR02868 CydC: thiol reductant ABC exporter, CydC subunit
    5.4e-19   66.1   0.0    7.8e-19   65.5   0.0    1.2  1  TIGR02204 MsbA_rel: ABC transporter, permease/ATP-binding protein
      1e-18   65.2   0.0    2.6e-18   63.9   0.0    1.6  2  TIGR01288 nodI: nodulation ABC transporter NodI
    1.5e-18   64.7   0.2    2.3e-16   57.6   0.1    2.1  1  TIGR03005 ectoine_ehuA: ectoine/hydroxyectoine ABC transporter, ATP-binding protein EhuA
    2.9e-18   63.9   0.0    4.2e-18   63.4   0.0    1.2  1  TIGR02770 nickel_nikD: nickel import ATP-binding protein NikD
    3.4e-18   63.6   0.0    7.1e-18   62.6   0.0    1.4  1  TIGR01166 cbiO: cobalt ABC transporter, ATP-binding protein
    5.5e-18   63.3   0.0    8.1e-18   62.7   0.0    1.1  1  TIGR03522 GldA_ABC_ATP: gliding motility-associated ABC transporter ATP-binding subunit GldA
    1.1e-17   62.0   0.0    1.5e-17   61.5   0.0    1.2  1  TIGR01187 potA: polyamine ABC transporter, ATP-binding protein
      2e-17   60.8   0.1    7.4e-17   58.9   0.0    1.7  1  TIGR03797 NHLM_micro_ABC2: NHLM bacteriocin system ABC transporter, ATP-binding protein
    2.2e-17   61.4   0.0    3.9e-17   60.5   0.0    1.3  1  TIGR00960 3a0501s02: type II secretory pathway family protein
    6.4e-17   59.7   0.0    1.4e-16   58.6   0.0    1.5  1  TIGR02769 nickel_nikE: nickel import ATP-binding protein NikE
    8.7e-17   59.2   0.0    1.8e-16   58.1   0.0    1.4  1  TIGR03410 urea_trans_UrtE: urea ABC transporter, ATP-binding protein UrtE
      1e-16   58.7   0.0    1.9e-16   57.9   0.0    1.3  1  TIGR02314 ABC_MetN: D-methionine ABC transporter, ATP-binding protein
    1.4e-16   58.7   0.0    2.5e-16   57.9   0.0    1.3  1  TIGR03771 anch_rpt_ABC: anchored repeat-type ABC transporter, ATP-binding subunit
    2.6e-16   57.6   0.0    1.6e-15   55.0   0.0    1.9  1  TIGR01978 sufC: FeS assembly ATPase SufC
    4.2e-16   57.1   0.0    1.1e-15   55.8   0.0    1.5  1  TIGR03411 urea_trans_UrtD: urea ABC transporter, ATP-binding protein UrtD
    5.6e-16   55.8   0.0    9.9e-16   55.0   0.0    1.3  1  TIGR01846 type_I_sec_HlyB: type I secretion system ATPase
    8.4e-16   55.4   0.0    1.2e-15   54.8   0.0    1.2  1  TIGR02203 MsbA_lipidA: lipid A export permease/ATP-binding protein MsbA
    1.8e-15   55.1   0.0    2.6e-15   54.5   0.0    1.2  1  TIGR03740 galliderm_ABC: lantibiotic protection ABC transporter, ATP-binding subunit
    4.7e-15   53.0   0.0    9.2e-07   25.6   0.0    2.1  2  TIGR03719 ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family
    4.9e-15   52.9   0.0      8e-10   35.7   0.0    2.1  2  TIGR03269 met_CoM_red_A2: methyl coenzyme M reductase system, component A2
      1e-14   50.2   0.0    1.4e-14   49.8   0.0    1.1  1  TIGR01257 rim_protein: rim ABC transporter
    8.5e-14   49.4   0.1    7.4e-07   26.7   0.0    2.3  2  TIGR02324 CP_lyasePhnL: phosphonate C-P lyase system protein PhnL
    1.4e-13   47.8   0.0    2.7e-13   46.8   0.0    1.4  1  TIGR03796 NHLM_micro_ABC1: NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein
    5.7e-13   46.5   0.0    8.2e-13   46.0   0.0    1.1  1  TIGR01186 proV: glycine betaine/L-proline transport ATP binding subunit
    1.4e-12   44.8   0.0    2.4e-12   44.1   0.0    1.3  1  TIGR01192 chvA: glucan exporter ATP-binding protein
    2.2e-11   40.7   0.0    1.6e-09   34.6   0.0    2.1  1  TIGR02633 xylG: D-xylose ABC transporter, ATP-binding protein
    1.5e-10   38.4   0.0    9.9e-10   35.7   0.0    1.9  1  TIGR03415 ABC_choXWV_ATP: choline ABC transporter, ATP-binding protein
    3.4e-10   37.6   0.0    1.7e-05   22.2   0.0    2.2  2  TIGR02323 CP_lyasePhnK: phosphonate C-P lyase system protein PhnK
    5.1e-10   36.3   0.0    6.5e-09   32.6   0.0    2.1  1  TIGR01193 bacteriocin_ABC: ABC-type bacteriocin transporter
    1.2e-08   30.7   0.0    6.4e-05   18.4   0.0    2.0  2  TIGR01271 CFTR_protein: cystic fibrosis transmembrane conductor regulator (CFTR)
    2.9e-06   23.8   0.0     0.0049   13.2   0.0    2.1  2  TIGR00954 3a01203: peroxysomal long chain fatty acyl transporter
      2e-05   20.0   0.0    2.9e-05   19.5   0.0    1.2  1  TIGR00957 MRP_assoc_pro: multi drug resistance-associated protein (MRP)
     0.0001   18.5   0.1     0.0053   12.8   0.0    2.0  2  TIGR00630 uvra: excinuclease ABC subunit A
    0.00047   16.3   0.1      0.001   15.2   0.1    1.4  2  TIGR00929 VirB4_CagE: type IV secretion/conjugal transfer ATPase, VirB4 family
  ------ inclusion threshold ------
      0.011   13.2   0.2      0.017   12.6   0.1    1.2  1  TIGR02322 phosphon_PhnN: phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN
      0.016   11.6   0.0      0.055    9.8   0.0    1.7  1  TIGR01194 cyc_pep_trnsptr: cyclic peptide transporter
      0.016   12.2   0.1      0.025   11.6   0.0    1.2  1  TIGR03819 heli_sec_ATPase: helicase/secretion neighborhood ATPase
      0.019   12.7   0.4       0.04   11.6   0.0    1.6  1  TIGR02237 recomb_radB: DNA repair and recombination protein RadB
      0.029   11.8   0.1      0.047   11.2   0.1    1.3  1  TIGR03263 guanyl_kin: guanylate kinase
      0.036   11.7   0.1      0.059   11.0   0.1    1.3  1  TIGR00231 small_GTP: small GTP-binding protein domain


Domain annotation for each model (and alignments):
>> TIGR00955  3a01204: pigment precursor permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  238.1   0.0   6.7e-73   4.3e-71      24     303 ..     170     451 ..     149     475 .. 0.84
   2 !   19.0   2.0   1.4e-06   9.1e-05     357     610 ..     476     770 ..     469     777 .. 0.69

  Alignments for each domain:
  == domain 1    score: 238.1 bits;  conditional E-value: 6.7e-73
   TIGR00955  24 vkrleealarkk.....pekellknvsGvaksGellAvlGsSGaGKtTLlnalafrsekglkvsgdvllnGekveakemraisayvqqddlfiptltvrehLmfsahlrlkrrltkkekrerveevleelgLrkcadtrigvpgrvkglSgGerkRlalaselltdPilLfcDEPTsGLDsfsaasvvkvLkklaqkgkt.viltiHQPsselfelfdkiillaeGrvvylGspeeavkffselglpcPenynpadFvlkvlavepgseeesretiekicdaeaks 303
                 ++ + +++++kk       ++ll + sG+++ G +lA++G+SGaGKtTLln+l+  ++ g  + g v+l G++ + ++ ++  + vqq d +   l+ r+h+ +  ++  +   tk e+r  ve++++++gL++c++t+ g +   kglSgG+++Rl+la  l + P+++f+DEPTsGLD++ aa+++  Lk++a+  ++ +++tiHQPs  +f+ fdk+++l +Gr +ylG + ++v+f+++ g p+  n npadF+l+++ ++ g+ e   ++++  + +e+k+
  MMETSP1137-20121227|2584_1 170 KNCTFTVMVKKKgekgkVPRKLLDDLSGTVEAGSVLAIMGPSGAGKTTLLNMLMLEDTGGDPR-GVVALGGNEFTLDTYKRHACVVQQTDTLWWPLSPRDHIGYAVRMYQPT-FTKAEQRDLVEKLIKKTGLESCKNTKAG-NVFFKGLSGGQKRRLSLAIALSKRPHVVFLDEPTSGLDAAAAANIMFYLKEVAKAESIaILCTIHQPSTAVFNGFDKVLFLTSGRPAYLGPAAQLVSFLERAGKPVAPNANPADFMLDLINKDFGHPEVADAVVA-TWASEKKE 451
                 333444455555666665578*********************************999988877.78************************************9986655444.6777************************.5559**************************************************99983569**********************************************************998887766644444.44443333 PP

  == domain 2    score: 19.0 bits;  conditional E-value: 1.4e-06
   TIGR00955 357 dplllkvrllqvivvavligliylg.qeltqkgvqningalFllltemtFqtvfavinvftaelpvflREtasglYrlsaYylakt....laelPlliilpllflsivYwmiglksgalkfltalllvvlvanvatsfglllscafestslalsvappvvipfllfgGfflnvdsvPvyfkwlsylSwfrYanEallinqwsdvkeie....lleantteecpssgeeiLeels.......................................feaadl.aldllilvvlilvfrllaylalr 610
                 dpl+  vr + ++   ++  +iy+   +l+q++v ++   + + l  m  +  +  i++++++ +v+ RE+++g+Y+  +Y++a         l  l++ pl    +vY+ +    ++ +f  ++   +l +++   ++ +l+ a ++  l++     v     lf G+ +n ++vP  ++ + y+   r+    ++ + + d  + e    +    t ++  s+g +i   l                                        ++ +d+  +d+  l++++++f+ l +++  
  MMETSP1137-20121227|2584_1 476 DPLSYLVRAVMIVFGTMFFITIYAStRKLEQEQVVSRLF-FCMWLVGMPAALGVVLIYIVNTDYQVVKREVKDGMYHPLTYVIAXDepaaADALHPLFLRPL--PRVVYPTANW--EISQFWRVYPAYLLAFMSFEFLAEFLAVALANPLLGMLAFINVWFTAFLFCGILVNEQEVPWPVRVFVYVLPYRWNLGEIVWSAFIDSPDYEgayeC---LTPNSTSSTGLAITGPLAgqpvncprgfycpddlsgvscwgktgqqiidglsstfkaISSEDMfGRDMGLLILIAVCFKTLYLIVFL 770
                 788888888888877777777887768899999987643.33445566666667778999***********************9751111222322333343..5789998765..466777777777777777788999*************************************999999999888888888888888887777764433...333333444455444444555556666666666666666666666666666666666444444456666666666666666555555 PP

>> TIGR00956  3a01205: pleiotropic drug resistance family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  184.1   0.0   1.1e-56   7.2e-55     705    1022 ..     112     429 ..      63     456 .. 0.83

  Alignments for each domain:
  == domain 1    score: 184.1 bits;  conditional E-value: 1.1e-56
   TIGR00956  705 fkkgelkkakkkeeeseskkndieagevlkstdltdeseevneeveeekesgeeifewrdltyevkikke..k....rvlLdevdGwvkPGkltALmGasGAGkttLlnvLaeRvttGvitegdrlvngrk.ldssFqRsiGYvqqqDlHletstvreaLrfsAylRqpkevskkekneyveevikllelesyadAvvGvpGe.GLnveqRkrltigveLvAkPklllFlDePtsGLDsqtawsivkllrklada.GqailCtiHqPsailleeFDrLLllqkGGktvYfGdlGensktlieYFekhGaekcpeeanPAewmLevig 1022
                  +      +   +++ + s k+ ++     + tdl+ + +++ ++++  k+++ + f++++ t++v +kk+  k    r+lLd+++G v+ G++ A+mG sGAGkttLln+L    t+G    g +  +g++   ++++R    vqq D        r+ + ++ ++ qp   +k+e+ + ve++ik  +les ++   G +   GL+  q++rl++++ L  +P  ++FlDePtsGLD+ +a+ i+  l+++a+a   ailCtiHqPs  +++ FD++L+l  G + +Y G+    +++l+ + e+ G  ++ ++anPA++mL+ i 
  MMETSP1137-20121227|2584_1  112 KPTAFPDESVSASHGTGSDKKKVAPAALHPATDLKPKIDSIVKQSSFSKKTTPADFQFKNCTFTVMVKKKgeKgkvpRKLLDDLSGTVEAGSVLAIMGPSGAGKTTLLNMLMLEDTGGDPR-GVVALGGNEfTLDTYKRHACVVQQTDTLWWPLSPRDHIGYAVRMYQPT-FTKAEQRDLVEKLIKKTGLESCKNTKAGNVFFkGLSGGQKRRLSLAIALSKRP-HVVFLDEPTSGLDAAAAANIMFYLKEVAKAeSIAILCTIHQPSTAVFNGFDKVLFLTSG-RPAYLGP----AAQLVSFLERAGK-PVAPNANPADFMLDLIN 429 
                  3333333333334445666677888888888999988888877777777788899**********99875222445599*********************************998988888.6655555551568**********************************6.89**************************88766********************.89**************************97256***********************988.******8....5679******996.57778*********986 PP

>> TIGR01188  drrA: daunorubicin resistance ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   93.0   0.0   6.4e-29   4.2e-27       9     182 ..     192     373 ..     188     409 .. 0.82

  Alignments for each domain:
  == domain 1    score: 93.0 bits;  conditional E-value: 6.4e-29
   TIGR01188   9 vdgvnlkveegevfglLGPnGAGKtttikmLttllkPdsGt....arvaGyDvvrepdevRrsigvvpqkasvdedLtarenlellgelyg..lpkkeaeeraeellelvelkeaadkkv.....ktysgGmrrrlelaasliaqPevlfLDEPtiGLDprtrraiwdlieelkke.gvtilltth 182
                 +d+++  ve+g+v++++GP GAGKtt+++mL   l+ ++G     + + G + +   d+ +r+  vv q+ ++   L+ r+++    ++y   + k+e+++ +e+l++   l   ++ k+     k +sgG++rrl+la++l ++P+v+fLDEPt+GLD+ ++++i  +++e+ k+  ++il t h
  MMETSP1137-20121227|2584_1 192 LDDLSGTVEAGSVLAIMGPSGAGKTTLLNMLM--LEDTGGDprgvVALGGNEFTL--DTYKRHACVVQQTDTLWWPLSPRDHIGYAVRMYQptFTKAEQRDLVEKLIKKTGLESCKNTKAgnvffKGLSGGQKRRLSLAIALSKRPHVVFLDEPTSGLDAAAAANIMFYLKEVAKAeSIAILCTIH 373
                 7899999***********************95..666665411114455777776..5678999**************************8224566666669*****99998777766511122678*********************************************9994555555555 PP

>> TIGR02857  CydD: thiol reductant ABC exporter, CydD subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.5   0.0   1.9e-28   1.3e-26     336     519 ..     190     377 ..     137     389 .. 0.78

  Alignments for each domain:
  == domain 1    score: 91.5 bits;  conditional E-value: 1.9e-28
   TIGR02857 336 palkevsltvepgelvalvGaSGaGKstllklll..gfvepteGailvngaelaeldadswrkqiawvpQkPllf.....egtvaenirlarkdaseaevkealeragldelvkalpqgleteiGer.gagLSgGqrqRlaLArallrdapllllDEPtahLDaeteaevlealrelaegrtv..llvaHrlal 519
                 + l+++s tve+g+++a++G+SGaGK+tll++l+   +    +G ++++g+   e++ d+++++   v+Q+ +l       + +   +r++++  ++ae ++ +e+   ++    l++  +t+ G+   +gLSgGq++Rl+LA al +  +++ lDEPt+ LDa+++a+++  l+e+a+++++  l   H++++
  MMETSP1137-20121227|2584_1 190 KLLDDLSGTVEAGSVLAIMGPSGAGKTTLLNMLMleDTGGDPRGVVALGGN---EFTLDTYKRHACVVQQTDTLWwplspRDHIGYAVRMYQPTFTKAEQRDLVEKLIKKT---GLESCKNTKAGNVfFKGLSGGQKRRLSLAIALSKRPHVVFLDEPTSGLDAAAAANIMFYLKEVAKAESIaiLCTIHQPST 377
                 478999*************************9862245555689******9...899999999*******97774322226788888999999999988666666655544...44455577888762689**********************************************97665411334476654 PP

>> TIGR03258  PhnT: 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.3   0.0     8e-28   5.2e-26      21     227 ..     189     403 ..     183     411 .. 0.86

  Alignments for each domain:
  == domain 1    score: 89.3 bits;  conditional E-value: 8e-28
   TIGR03258  21 rvvlddlsleieaGellallGksGsGkttllravaGfvkadG....GrllvadrdlthlppykrnlallvqnyalfphlkveenvafGlrark..qskaliaervadalklvql.....sdaaarlpaqlsGGqqqrvalaralvvrpdvllldeplsaldaqlrasvveelkalhrelpeltvlyvthdrdealv.ladkillmkeGslialGetral 227
                 r +lddls ++eaG +la++G+sG+Gkttll ++   ++  G    G +++++++ t l  ykr  +++ q  +l+  l   + + + +r  +   +ka+  + v + +k  +l     + a++ + + lsGGq++r++la al  rp+v++ldep s lda   a+++  lk + +    +++l+  h+ + a+    dk+l++  G+ + lG + +l
  MMETSP1137-20121227|2584_1 189 RKLLDDLSGTVEAGSVLAIMGPSGAGKTTLLNMLM--LEDTGgdprGVVALGGNEFT-LDTYKRHACVVQQTDTLWWPLSPRDHIGYAVRMYQptFTKAEQRDLVEKLIKKTGLescknTKAGNVFFKGLSGGQKRRLSLAIALSKRPHVVFLDEPTSGLDAAAAANIMFYLKEVAK-AESIAILCTIHQPSTAVFnGFDKVLFLTSGRPAYLGPAAQL 403
                 5689***************************9985..33333367899*******99.789*****************************87622456766666888888777722222467888999*********************************************9976.5789*******9988875157************99998887 PP

>> TIGR01184  ntrCD: nitrate ABC transporter, ATP-binding proteins C and D
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.7   0.0   2.9e-27   1.9e-25       1     198 [.     192     399 ..     192     414 .. 0.86

  Alignments for each domain:
  == domain 1    score: 87.7 bits;  conditional E-value: 2.9e-27
   TIGR01184   1 lkdvdleikkgefislighsgcgkstllnliaglek..ptsgavilegkeitepgpdrm.vvfqnysllpw.ltvrenialavdavlrdlskserreiveehielvglreaadkrpeq.....lsggmkqrvaiaralsirpklllldepfgaldaltreelqekllkiveearvtvlmvthdvdeallls.drvvmltngpaakige 198
                 l+d++ +++ g  ++++g sg gk+tlln++   +      g v l g+e t    +r   v q+   l w l+ r+ i  av + +++ +k+e+r++ve+ i+  gl++ ++ + ++     lsgg k+r+++a als rp++++ldep   lda +  ++   l ++++ +++++l   h+   a++   d+v++lt+g  a++g 
  MMETSP1137-20121227|2584_1 192 LDDLSGTVEAGSVLAIMGPSGAGKTTLLNMLMLEDTggDPRGVVALGGNEFTLDTYKRHaCVVQQTDTLWWpLSPRDHIGYAVRMYQPTFTKAEQRDLVEKLIKKTGLESCKNTKAGNvffkgLSGGQKRRLSLAIALSKRPHVVFLDEPTSGLDAAAAANIMFYLKEVAKAESIAILCTIHQPSTAVFNGfDKVLFLTSGRPAYLGP 399
                 6788889**********************9875554114689********9998888742455555555553899*********************************9888777654222238*****************************************************************855*********9999885 PP

>> TIGR03864  PQQ_ABC_ATP: ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.2   0.0   7.5e-27   4.9e-25      14     220 ..     189     404 ..     183     411 .. 0.86

  Alignments for each domain:
  == domain 1    score: 86.2 bits;  conditional E-value: 7.5e-27
   TIGR03864  14 rralddvsltvakgefvaLLGpnGaGkstLfsllt..rLyeakegeikvaGldlrrapkealarlGvvfqqstlDldlsveqnlryhaaLh..Glsraeaeerieealarlglaeraeek.....vreLnGGhrrrveiarallhePklLLlDeatvGLDiesraalveevrelvreeglsvLWathlvde..veaedrlvvlhkGkvlaqGaaaela 220
                 r+ ldd+s tv+ g++ a++Gp GaGk+tL+++l        ++g +++ G +++ ++ +  ++  vv q  tl   ls +  + y   +    +++ae ++ +e+++++ gl+  +++k      + L+GG++rr+ +a al  +P+++ lDe+t GLD+++ a+++ +++e++++e++++L + h       +  d+++ l +G+ +  G aa+l+
  MMETSP1137-20121227|2584_1 189 RKLLDDLSGTVEAGSVLAIMGPSGAGKTTLLNMLMleDTGGDPRGVVALGGNEFTLDTYK--RHACVVQQTDTLWWPLSPRDHIGYAVRMYqpTFTKAEQRDLVEKLIKKTGLESCKNTKagnvfFKGLSGGQKRRLSLAIALSKRPHVVFLDEPTSGLDAAAAANIMFYLKEVAKAESIAILCTIHQPSTavFNGFDKVLFLTSGRPAYLGPAAQLV 404
                 789****************************987511445567999*****999988766..78899********************99982346677777779*********998888833333377***********************************************************86541156779********999999998886 PP

>> TIGR02315  ABC_phnC: phosphonate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.1   0.0   6.5e-26   4.3e-24      16     233 ..     190     403 ..     177     406 .. 0.81

  Alignments for each domain:
  == domain 1    score: 83.1 bits;  conditional E-value: 6.5e-26
   TIGR02315  16 qalknvnleikkGelvaviGlsGaGkstllrsinrlveissg....sillegkevtklkkkelrklrkkigmifqeynlierltvlenvLsgrlgakstlksllglfseedkekAle.lLervglaelaakradq.....LsGGqqqRvaiaRalaqqpklilaDEPiasLDpksskqvmdllkrinkekgitvivnlHqvdlak.kyadrivglkageivfdgassel 233
                 + l++++ +++ G ++a++G+sGaGk+tll ++  + e++ g     + l g+e t      l + +++  ++        +++ l   Ls+r     +++++  +f++++++  +e l+++ gl++ ++++a +     LsGGq+ R+++a al ++p++++ DEP++ LD +++ ++m +lk+++k + i++++++Hq + a  +  d+++ l +g+  + g++++l
  MMETSP1137-20121227|2584_1 190 KLLDDLSGTVEAGSVLAIMGPSGAGKTTLLNML--MLEDTGGdprgVVALGGNEFT------LDTYKRHACVVQ-------QTDTLWWPLSPRDHIGYAVRMYQPTFTKAEQRDLVEkLIKKTGLESCKNTKAGNvffkgLSGGQKRRLSLAIALSKRPHVVFLDEPTSGLDAAAAANIMFYLKEVAKAESIAILCTIHQPSTAVfNGFDKVLFLTSGRPAYLGPAAQL 403
                 67999999*********************9987..445555511114444444444......666666655443.......456778889999999999999999**999988776516699**********964444449***********************************************************99886255699999999998888887765 PP

>> TIGR03608  L_ocin_972_ABC: putative bacteriocin export ABC transporter, lactococcin 972 group
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.7   0.0   7.7e-26     5e-24       9     204 ..     187     387 ..     177     389 .. 0.80

  Alignments for each domain:
  == domain 1    score: 82.7 bits;  conditional E-value: 7.7e-26
   TIGR03608   9 kdkeilkklslkiekGelvaivGesGsGKstlLnilgllek..kdsgkvilegkekaklkskkaskllreklgylFqnfaLlenetveenlelalklkkkskkekekkkkevlekvglekklkkk...iy..elsgGekqRvalarillkeselilADEPtgsLDkknreevlellkelkeegktiiivt.Hdp..evaekadrvi 204
                   +++l++ls ++e+G+++ai+G sG+GK+tlLn+l l ++    +g v l g+e  +l++ k +  + ++   l+  + L   + + + +++       +k e++++++++++k gle+++++k   ++   lsgG+k R++la +l k +++++ DEPt+ LD+   ++++ +lke+++++ + i+ t H+p  +v + +d+v+
  MMETSP1137-20121227|2584_1 187 VPRKLLDDLSGTVEAGSVLAIMGPSGAGKTTLLNMLMLEDTggDPRGVVALGGNE-FTLDTYKRHACVVQQTDTLW--WPLSPRDHIGYAVRM--YQPTFTKAEQRDLVEKLIKKTGLESCKNTKagnVFfkGLSGGQKRRLSLAIALSKRPHVVFLDEPTSGLDAAAAANIMFYLKEVAKAESIAILCTiHQPstAVFNGFDKVL 387
                 45799******************************98877622457899999988.77888888888888888777..567777777776655..6667788899999**********9888887333322269*********************************************999998777664765114556666666 PP

>> TIGR03873  F420-0_ABC_ATP: proposed F420-0 ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.0   0.0   6.4e-26   4.2e-24      14     224 ..     189     403 ..     180     408 .. 0.84

  Alignments for each domain:
  == domain 1    score: 83.0 bits;  conditional E-value: 6.4e-26
   TIGR03873  14 rlivddvdvtaPaGaltgllGPnGsGkstllrlla..GllapdaGevdlagadlkalsrrararrvalveqdsdaevplsvrdvvalGriPhrslfaadsdedaevvdralarvelssladrd.....lstlsGGerqrvhlaralaqePklllldePtnhldvsaqlellalvrela.aegvtvvvalhdlnlaasv.cdhvvvldgGrvvaaGppaev 224
                 r ++dd+  t+ aG++ +++GP G+Gk+tll++l         +G v l+g++ +  + ++ a    +v+q  +   pls rd +      ++  f+       ++v++++ +++l+s  + +     ++ lsGG+++r  la al+++P++++ldePt  ld +a  +++  ++e a ae ++++ ++h  + a+    d+v+ l +Gr +  Gp+a++
  MMETSP1137-20121227|2584_1 189 RKLLDDLSGTVEAGSVLAIMGPSGAGKTTLLNMLMleDTGGDPRGVVALGGNEFTLDTYKRHA---CVVQQTDTLWWPLSPRDHIGYAVRMYQPTFTKAE--QRDLVEKLIKKTGLESCKNTKagnvfFKGLSGGQKRRLSLAIALSKRPHVVFLDEPTSGLDAAAAANIMFYLKEVAkAESIAILCTIHQPSTAVFNgFDKVLFLTSGRPAYLGPAAQL 403
                 7899***************************987511455567999****9997665555555...5789999999*********999999999998766..66688999999988877654422222689*********************************************99567889999*****99986527**********9999998765 PP

>> TIGR02982  heterocyst_DevA: ABC exporter ATP-binding subunit, DevA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.7   0.0   3.8e-25   2.5e-23      13     202 ..     184     375 ..     177     393 .. 0.84

  Alignments for each domain:
  == domain 1    score: 80.7 bits;  conditional E-value: 3.8e-25
   TIGR02982  13 kgelrkqvlfdinleiepgeiviltGpsGsGkttlltligglrsvqeGelkvlgkelkgasekelvqvrrkiGyifqahnllesltaeqnvrmalelke.klsakeakakaeelleavglee.....rldykpedlsgGqkqrvaiaralvarPklvladePtaaldkksgrevvellqklareqgttillvthdn 202
                 kg++ +++l d++ ++e+g ++ + GpsG+Gkttll+++     +  G+ +  g    g +e +l   +r+  ++ q+  l   l  ++ +  a+ + + +++++e+++ +e+l+++ gle+       +   + lsgGqk+r+++a al +rP++v+ dePt+ ld+ ++ +++  l+++a+ ++ +il   h +
  MMETSP1137-20121227|2584_1 184 KGKVPRKLLDDLSGTVEAGSVLAIMGPSGAGKTTLLNMLML-EDT-GGDPR--GVVALGGNEFTLDTYKRHACVVQQTDTLWWPLSPRDHIGYAVRMYQpTFTKAEQRDLVEKLIKKTGLESckntkAGNVFFKGLSGGQKRRLSLAIALSKRPHVVFLDEPTSGLDAAAAANIMFYLKEVAKAESIAILCTIHQP 375
                 788999******************************98853.333.33332..33345778899999****************************996516889999999***********95444333445678********************************************************99975 PP

>> TIGR00968  3a0106s01: sulfate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.6   0.0   8.1e-25   5.3e-23      14     218 ..     190     403 ..     178     409 .. 0.85

  Alignments for each domain:
  == domain 1    score: 79.6 bits;  conditional E-value: 8.1e-25
   TIGR00968  14 qalddvdlevktGslvallGpsGsGkstllrviaGlek..pdsGrilleGrdvtrvkvrdreiGfvfqhyalfkhltvrdniafGleirkk..dkakikakveellelvqle.....klgdrypsqlsGGqrqrvalaralavepqvllldepfgaldakvrkelrawlrklhdevkvttvfvthdqeeal.evadrivvlekGkieqvgsaeev 218
                 + ldd++ +v+ Gs+ a++GpsG+Gk+tll ++   +   +  G + l G++ t +++ +r+   v q  +l+  l+ rd i + +++ +   +ka+ ++ ve+l++  +le     k g+ + + lsGGq++r++la al+  p+v++ldep + lda    ++  +l+++ +  +++ +   h+ + a+ +  d++  l  G+   +g a+++
  MMETSP1137-20121227|2584_1 190 KLLDDLSGTVEAGSVLAIMGPSGAGKTTLLNMLMLEDTggDPRGVVALGGNEFT-LDTYKRHACVVQQTDTLWWPLSPRDHIGYAVRMYQPtfTKAEQRDLVEKLIKKTGLEsckntKAGNVFFKGLSGGQKRRLSLAIALSKRPHVVFLDEPTSGLDAAAAANIMFYLKEVAKAESIAILCTIHQPSTAVfNGFDKVLFLTSGRPAYLGPAAQL 403
                 5689999***********************998754442145789999998887.7888999*************************99652268888999****999999722211445678899**********************************************9999998888889888875367899999999988777777665 PP

>> TIGR00972  3a0107s01c2: phosphate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.9   0.0   1.2e-24   7.7e-23      16     230 ..     191     403 ..     185     410 .. 0.80

  Alignments for each domain:
  == domain 1    score: 78.9 bits;  conditional E-value: 1.2e-24
   TIGR00972  16 alkdvnleikknkvtaliGpsGcGkstllrslnrlndlveevrieGkvllegkdiydkkldvvelrkkvGmvfqkpnp.fpmsiydnvayglrlkg.ikdkkeldeiveesLkkaalwdevkdklkks.alsLsGGqqqrlciaralavePevlLlDePtsaLDpiatekieeliqeLkkkytivivt..hnmqqaa.rvsdktaffleGelveegeteqi 230
                  l+d++  +++ +v a++GpsG+Gk+tll  l  l+d+  +   +G v l g++ + +     +++++  +v q+ +  +p s  d + y++r+ + + +k+e +++ve+ +kk++l    ++k+ +    +LsGGq++rl++a al+ +P+v+ lDePts LD+ a+++i   ++e++k   i i    h+ + a     dk+ f+++G+    g+++q+
  MMETSP1137-20121227|2584_1 191 LLDDLSGTVEAGSVLAIMGPSGAGKTTLLNML-MLEDT--GGDPRGVVALGGNEFTLD-----TYKRHACVVQQTDTLwWPLSPRDHIGYAVRMYQpTFTKAEQRDLVEKLIKKTGLESCKNTKAGNVfFKGLSGGQKRRLSLAIALSKRPHVVFLDEPTSGLDAAAAANIMFYLKEVAKAESIAILCtiHQPSTAVfNGFDKVLFLTSGRPAYLGPAAQL 403
                 577888889999****************9877.45555..46778******9987655.....567777888888776358************9875789*****************865555554441458**********************************************9987776665114444433133588888888877666666665 PP

>> TIGR03265  PhnT2: putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.1   0.0   2.3e-24   1.5e-22      18     199 ..     190     379 ..     175     402 .. 0.84

  Alignments for each domain:
  == domain 1    score: 78.1 bits;  conditional E-value: 2.3e-24
   TIGR03265  18 talkdislsvkkgelvclLGPsGCGkttLLriiaGLek..qdaGaillggrditrlppqkrdyGivfqsYaLfPnltvaeniayGLk..nkklkreevaerveelLelvglsgseek.....yPgqlsGGqqqrvaLaralalsPglLLLDePlsaLDakvrekLreelkklqrklgvttimvthdqeeal 199
                 + l+d+s +v++g +++++GPsG GkttLL ++   ++    +G ++lgg++ t l + kr   +v q+ +L+  l  ++ i+y ++  +   +++e+++ ve+l++  gl++ ++      +   lsGGq++r++La al  +P++++LDeP s LDa   +++   lk++ +  +++ +   h+   a+
  MMETSP1137-20121227|2584_1 190 KLLDDLSGTVEAGSVLAIMGPSGAGKTTLLNMLMLEDTggDPRGVVALGGNEFT-LDTYKRHACVVQQTDTLWWPLSPRDHIGYAVRmyQPTFTKAEQRDLVEKLIKKTGLESCKNTkagnvFFKGLSGGQKRRLSLAIALSKRPHVVFLDEPTSGLDAAAAANIMFYLKEVAKAESIAILCTIHQPSTAV 379
                 57999**************************987444422568*********98.67889************************97611556789999999**********987653122227778**********************************************9999998888878766664 PP

>> TIGR00958  3a01208: antigen peptide transporter 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.2   0.0   5.7e-24   3.7e-22     494     700 ..     189     403 ..     143     407 .. 0.83

  Alignments for each domain:
  == domain 1    score: 76.2 bits;  conditional E-value: 5.7e-24
   TIGR00958 494 kpvlkdLtftlepGevvalVGPsGsGKStvaal..lenlYqPtgGqvllDgkplkeydhkylhrkvalVgqEPvlf.sgsvreNiaYGltktedeevtaaakaanahdFise..lekgydtevgekG.sqlsgGqkqriAiARALvrkPrvLiLDeAtSALDa....eveqllqesksaksrtvlliahrLstv..ekadkilvlkkgsvvelGthkqL 700
                 +++l dL+ t+e+G+v a+ GPsG GK t   +  le       G v l g+   e+    ++r+  +V+q   l+   s r+ i Y ++ ++  + t a ++  +++ i++  le+  +t+ g+   + lsgGqk r+ +A AL ++P v+ LDe tS LDa    ++   l+e  +a+s ++l   h+ st+  +  dk+l+l+ g+   lG  +qL
  MMETSP1137-20121227|2584_1 189 RKLLDDLSGTVEAGSVLAIMGPSGAGKTTLLNMlmLEDTGGDPRGVVALGGN---EFTLDTYKRHACVVQQTDTLWwPLSPRDHIGYAVRMYQ-PTFTKAEQRDLVEKLIKKtgLESCKNTKAGNVFfKGLSGGQKRRLSLAIALSKRPHVVFLDEPTSGLDAaaaaNIMFYLKEVAKAESIAILCTIHQPSTAvfNGFDKVLFLTSGRPAYLGPAAQL 403
                 5789*************************98651156777677789999997...5667889999999***988862679********99886.57889999999*****76226778999999964266*********************************87666666778899999**********9985336789******9988877777776 PP

>> TIGR02673  FtsE: cell division ATP-binding protein FtsE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.0   0.0   2.1e-23   1.4e-21      15     198 ..     189     376 ..     177     393 .. 0.84

  Alignments for each domain:
  == domain 1    score: 75.0 bits;  conditional E-value: 2.1e-23
   TIGR02673  15 veaLkdvslkiekgeflfltGasGaGkttllklllgaek..psrGevevagedvarlrerelpllRrkigvvfqDfkllkdrtvlenvalalevrgkk..eeeiqkrveevlelvgledkakalp.....eelsgGeqqRvaiaRaivnkPelllaDePtGnlDdelserildllkelnk.rGttvivathdee 198
                  + L+d+s ++e+g++l ++G+sGaGkttll++l+  ++    rG v + g++++      l + +r+  vv q   l    +  + +  a+++ + +  ++e +  ve+++++ gle  +++++     + lsgG + R ++a a+ ++P+++  DePt  lD++ +++i+  lke+ k + ++++ + h+ +
  MMETSP1137-20121227|2584_1 189 RKLLDDLSGTVEAGSVLAIMGPSGAGKTTLLNMLMLEDTggDPRGVVALGGNEFT------LDTYKRHACVVQQTDTLWWPLSPRDHIGYAVRMYQPTftKAEQRDLVEKLIKKTGLESCKNTKAgnvffKGLSGGQKRRLSLAIALSKRPHVVFLDEPTSGLDAAAAANIMFYLKEVAKaESIAILCTIHQPS 376
                 57899*****************************9988722469*******9885......778999*********************8888887765115555566**********9987776622222569*******************************************997625788888889865 PP

>> TIGR01842  type_I_sec_PrtD: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.7   0.0   2.1e-07   1.3e-05     331     365 ..     189     223 ..     159     250 .. 0.79
   2 !   47.5   0.0   3.1e-15     2e-13     453     541 ..     313     404 ..     285     407 .. 0.87

  Alignments for each domain:
  == domain 1    score: 21.7 bits;  conditional E-value: 2.1e-07
   TIGR01842 331 kktlkgisfalkaGealaiiGpsgsGkssLarllv 365
                 +k l ++s +++aG++lai+Gpsg+Gk++L  +l+
  MMETSP1137-20121227|2584_1 189 RKLLDDLSGTVEAGSVLAIMGPSGAGKTTLLNMLM 223
                 47899*************************99986 PP

  == domain 2    score: 47.5 bits;  conditional E-value: 3.1e-15
   TIGR01842 453 aaLsgGqrqRiaLaRalygdPklvvLDePnanLDeeGeqalakalkelkarkitvvvit.hrps..llelvdkilvlkdGalkafGereevl 541
                 ++LsgGq+ R++La al   P++v LDeP + LD++  + ++  lke+ +++ ++++ t h+ps  + +  dk+l l  G+ + +G + +++
  MMETSP1137-20121227|2584_1 313 KGLSGGQKRRLSLAIALSKRPHVVFLDEPTSGLDAAAAANIMFYLKEVAKAESIAILCTiHQPStaVFNGFDKVLFLTSGRPAYLGPAAQLV 404
                 58*********************************************98888887776648775337899**************99998876 PP

>> TIGR03375  type_I_sec_LssB: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.6   0.0   5.6e-22   3.6e-20     457     692 ..     158     407 ..     145     411 .. 0.75

  Alignments for each domain:
  == domain 1    score: 69.6 bits;  conditional E-value: 5.6e-22
   TIGR03375 457 lsreklkGeielknvsfkY....peee....kaaLknvslkikpGekvaiiGriGsGKstllklll..glyepteGsvlldgvdirqidpadlrrnigyvpqdvtLfyG.tlrdNialgapaaedeellraaelaGvtefvkkhpkGldlqigerG...esLSgGQrqavalaRallkdppillLDEPtsalDnsseekllerLkella.dkTlvlvt.Hr..tslLelvdriivldkGrivadGpkdevleal 692
                 +s+++   ++++kn++f+     ++e+    ++ L+++s ++++G+ +ai+G  G+GK+tll++l+        +G v l g + +     + +r+  +v+q  tL    + rd i ++ + + + +  +a ++  v++++kk      +  + ++   ++LSgGQ++ ++la al k p++++LDEPts lD+++ ++++  Lke+++ +   +l t H+  t++ +  d+++ l++Gr    Gp +++++ l
  MMETSP1137-20121227|2584_1 158 FSKKTTPADFQFKNCTFTVmvkkKGEKgkvpRKLLDDLSGTVEAGSVLAIMGPSGAGKTTLLNMLMleDTGGDPRGVVALGGNEFT---LDTYKRHACVVQQTDTLWWPlSPRDHIGYAVR-MYQPTFTKAEQRDLVEKLIKKTGLESCKNTKAGNvffKGLSGGQKRRLSLAIALSKRPHVVFLDEPTSGLDAAAAANIMFYLKEVAKaESIAILCTiHQpsTAVFNGFDKVLFLTSGRPAYLGPAAQLVSFL 407
                 55666666777777777653322222222225679***************************998722345567899***998775...45678999999**9999875388999988877.444566777777777777766543333333333222357***********************************************965555666658733568999***********99999999988766 PP

>> TIGR01277  thiQ: thiamine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.1   0.0   6.2e-22     4e-20      18     208 ..     196     395 ..     189     400 .. 0.84

  Alignments for each domain:
  == domain 1    score: 70.1 bits;  conditional E-value: 6.2e-22
   TIGR01277  18 dlsveaGervailGesGaGkstllnliaGfle..pasGeikvndkdhtrsapyerpvsmlfqennlfahltvrqniglGlk...pglklnavqkekvedvarqvGiadyler.....lpeelsGGqrqrvalarclvrekpillldepfsaldpklreemlalvkkladekkltlllvthslsdaa.aiasqvvvvedGkik 208
                 + +veaG  +ai+G+sGaGk+tlln++    +    +G + + +++  ++  y+r   ++ q + l+  l+ r+ ig  ++   p++  +a+q++ ve++ ++ G++   +      + + lsGGq++r++la  l +   +++ldep s ld +   +++  +k++a+ + +++l   h++s a+ +  ++v++++ G+ +
  MMETSP1137-20121227|2584_1 196 SGTVEAGSVLAIMGPSGAGKTTLLNMLMLEDTggDPRGVVALGGNE-FTLDTYKRHACVVQQTDTLWWPLSPRDHIGYAVRmyqPTF-TKAEQRDLVEKLIKKTGLESCKNTkagnvFFKGLSGGQKRRLSLAIALSKRPHVVFLDEPTSGLDAAAAANIMFYLKEVAKAESIAILCTIHQPSTAVfNGFDKVLFLTSGRPA 395
                 558**********************986554411346888887765.56889*************************9985222554.689***************9987651111144679*****************9******************************************998636789*****999866 PP

>> TIGR02211  LolD_lipo_ex: lipoprotein releasing system, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.1   0.0   1.4e-07   9.3e-06       7      69 ..     178     242 ..     174     257 .. 0.83
   2 !   44.9   0.0   3.1e-14     2e-12     114     213 ..     282     388 ..     271     394 .. 0.85

  Alignments for each domain:
  == domain 1    score: 23.1 bits;  conditional E-value: 1.4e-07
   TIGR02211   7 ltksykegkleievlkgvsleiekgelvaivGssGsGkstllhllggldkpt..sGevllkGkel 69 
                 ++k+ ++gk+  ++l+++s  +e+g ++ai+G sG+Gk+tll +l   d+     G v l G+e+
  MMETSP1137-20121227|2584_1 178 VKKKGEKGKVPRKLLDDLSGTVEAGSVLAIMGPSGAGKTTLLNMLMLEDTGGdpRGVVALGGNEF 242
                 67888999999********************************9987666432257777777765 PP

  == domain 2    score: 44.9 bits;  conditional E-value: 3.1e-14
   TIGR02211 114 skkeakerakellekvglekrinkkpse.....lsGGerqrvaiaralvnkPklvladePtgnldkktakkifelllelnkekntallvvthdlela..kkldrvle 213
                  k+e ++  ++l++k gle   n k+++     lsGG+++r ++a al ++P++v+ dePt+ ld+++a +i+  l+e+ k++ +a+l   h+ + a  + +d+vl 
  MMETSP1137-20121227|2584_1 282 TKAEQRDLVEKLIKKTGLESCKNTKAGNvffkgLSGGQKRRLSLAIALSKRPHVVFLDEPTSGLDAAAAANIMFYLKEVAKAESIAILCTIHQPSTAvfNGFDKVLF 388
                 5778888999**********99999986455558********************************************************99875441145566655 PP

>> TIGR02142  modC_ABC: molybdate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.1   0.0   2.6e-21   1.7e-19      15     221 ..     194     405 ..     185     418 .. 0.84

  Alignments for each domain:
  == domain 1    score: 68.1 bits;  conditional E-value: 2.6e-21
   TIGR02142  15 dvdlelpgkgvtalFGrsGsGktslirliaGLtrpdegeivldgevlqdsrkkiilppekRrvgyvFqeArLFpHlsvrenLrYGlkraraeerriseekvielL....giehLleRlpgk.....LsGGekqRvaigRAlLssPeLLlmDePLaaLDekrkkeilPyLerlsaelkiPilyvsHsld.evarladrvvvledGrvkaagkleevla 221
                 d++ ++++  v a+ G sG+Gkt+l++++   +  + g     g v   + ++ +l + kR+  +v q  +L+  ls r+ + Y ++  +++ +++++  ++e L    g+e   + ++g+     LsGG k R +++ Al  +P+++ +DeP + LD    ++i+ yL+++++  +i il   H+ +  v    d+v+ l  Gr +  g+++++++
  MMETSP1137-20121227|2584_1 194 DLSGTVEAGSVLAIMGPSGAGKTTLLNMLM--LEDTGGD--PRGVVAL-GGNEFTLDTYKRHACVVQQTDTLWWPLSPRDHIGYAVRMYQPTFTKAEQRDLVEKLikktGLESCKNTKAGNvffkgLSGGQKRRLSLAIALSKRPHVVFLDEPTSGLDAAAAANIMFYLKEVAKAESIAILCTIHQPStAVFNGFDKVLFLTSGRPAYLGPAAQLVS 405
                 5778999999*****************974..3334443..3455544.555699*******************************99999888887655554442222788777766654444449**********************************************************9862688899***********99999999876 PP

>> TIGR01189  ccmA: heme ABC exporter, ATP-binding protein CcmA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.5   0.0   3.9e-21   2.6e-19      13     186 ..     189     373 ..     183     380 .. 0.82

  Alignments for each domain:
  == domain 1    score: 67.5 bits;  conditional E-value: 3.9e-21
   TIGR01189  13 rvlleglsfelaaGealvveGpnGiGKttLLRila..GLlkpesGevelndkelaeqrdelaeellylgHldglKaeLsalEnLkfyaallq.....seqk.tveealekvgLsgledlp.....vaqLsAGqkrRlalarLllskaplWiLDEPttalDkegvellaellaaHlargGivllathq 186
                 r+ll +ls ++ aG +l++ Gp G+GKttLL +l          G v+l ++e +   d+++++   +  +d+l   Ls ++ + +  ++ q     +eq+  ve+ ++k gL+ ++++      ++ Ls GqkrRl+la  l ++  +  LDEPt  lD+++ + ++  l++ ++   i++l t +
  MMETSP1137-20121227|2584_1 189 RKLLDDLSGTVEAGSVLAIMGPSGAGKTTLLNMLMleDTGGDPRGVVALGGNEFTL--DTYKRHACVVQQTDTLWWPLSPRDHIGYAVRMYQptftkAEQRdLVEKLIKKTGLESCKNTKagnvfFKGLSGGQKRRLSLAIALSKRPHVVFLDEPTSGLDAAAAANIMFYLKEVAKAESIAILCTIH 373
                 689999*************************998511333456899****888654..56999*******************9988777666555554555578889999999988765511111678************99999999******************************999998744 PP

>> TIGR02868  CydC: thiol reductant ABC exporter, CydC subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.2   0.0   7.4e-21   4.8e-19     349     527 ..     189     371 ..     148     375 .. 0.76

  Alignments for each domain:
  == domain 1    score: 66.2 bits;  conditional E-value: 7.4e-21
   TIGR02868 349 e.vlkgvsldlepGervavvGasGaGKstLlalla..glldplkGevtldgvsvaslsesevrrvvsvlaqdaHlF.....dttvreNlrlarpdatdeellaaLervgLadwlraLpdGldtklgeg.garlSGGerqRlalARaLladapvllLDEPtehLDaeteeelledLl.aaeegrtvvlvt 527
                 +  l+++s ++e+G+ +a++G+sGaGK+tLl++l+        +G v+l g    +++ +  +r ++v++q   l+        +   +r+ +p+ t +e  +++e+   +  l++     +tk g+   + lSGG+++Rl lA aL +   v+ LDEPt +LDa+++++++  L   a+++   +l t
  MMETSP1137-20121227|2584_1 189 RkLLDDLSGTVEAGSVLAIMGPSGAGKTTLLNMLMleDTGGDPRGVVALGG---NEFTLDTYKRHACVVQQTDTLWwplspRDHIGYAVRMYQPTFTKAEQRDLVEKLIKKTGLES---CKNTKAGNVfFKGLSGGQKRRLSLAIALSKRPHVVFLDEPTSGLDAAAAANIMFYLKeVAKAESIAILCT 371
                 348999*************************998722333446899**999...566668899********999984443345788889999999999999888887655555555...44555554313569***************************************99994344444455555 PP

>> TIGR02204  MsbA_rel: ABC transporter, permease/ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.5   0.0   1.2e-20   7.8e-19     352     562 ..     188     404 ..     144     408 .. 0.79

  Alignments for each domain:
  == domain 1    score: 65.5 bits;  conditional E-value: 1.2e-20
   TIGR02204 352 dqkaldgldltvrpGetvalvGPsGaGkstllelllrfy..dPqsGailldGvdlreldpeelrerlalvpqdsalf.aasvleniryGrpdasdeeveaaakaaeadefisk..lpeGydtllGerg.vtLsGGqkqriaiarailkdapiLLLdeatsaLdaeseqlvqqaleelmkgrttlv..iahrLat..vlkadrivvldkGriveqGthaeLi 562
                  +k ld+l+ tv++G ++a++GPsGaGk+tll++l+        +G + l+G +      +  +++  +v+q  +l+   s ++ i y      +   ++a +    +++i+k  l++  +t+ G+     LsGGqk+r+++a a+ k   +++Lde ts Lda +  ++   l+e+ k     +    h+ +t      d+++ l  Gr    G  a+L+
  MMETSP1137-20121227|2584_1 188 PRKLLDDLSGTVEAGSVLAIMGPSGAGKTTLLNMLMLEDtgGDPRGVVALGGNEF---TLDTYKRHACVVQQTDTLWwPLSPRDHIGYAV-RMYQPTFTKAEQRDLVEKLIKKtgLESCKNTKAGNVFfKGLSGGQKRRLSLAIALSKRPHVVFLDEPTSGLDAAAAANIMFYLKEVAKAESIAIlcTIHQPSTavFNGFDKVLFLTSGRPAYLGPAAQLV 404
                 46789****************************9875321133479******865...5677889999999999987257999***9975.4567778888888889999976448899999999976257*******************************************99998776544115688766213456899988888877666666665 PP

>> TIGR01288  nodI: nodulation ABC transporter NodI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.9   0.0     4e-20   2.6e-18      19     196 ..     191     376 ..     175     452 .. 0.81
   2 ?   -2.1   0.0       4.8   3.1e+02      84     113 ..     471     505 ..     429     515 .. 0.69

  Alignments for each domain:
  == domain 1    score: 63.9 bits;  conditional E-value: 4e-20
   TIGR01288  19 vvndlsftiaagecfgllgpngagkstiarlv.lglispdegkitvlgepvpararlarakigvvpqfdnldreftvrenllvfgryfg..lstreieevipsllefarleskadvr.....vadlsggmkrrltlaralindpqllildepttgldpharhliwerlrsl.largktilltthlme 196
                 +++dls t+ ag ++ ++gp gagk+t+  ++ l  +  d   +  lg ++ +     r +  vv+q d+l   ++ r+ +    r ++  ++  e  + +  l++ + les  +++        lsgg krrl+la al + p+++ ldept+gld  a   i   l+ +  a   +il t h   
  MMETSP1137-20121227|2584_1 191 LLDDLSGTVEAGSVLAIMGPSGAGKTTLLNMLmLEDTGGDPRGVVALGGNEFTLDTYKR-HACVVQQTDTLWWPLSPRDHIGYAVRMYQptFTKAEQRDLVEKLIKKTGLESCKNTKagnvfFKGLSGGQKRRLSLAIALSKRPHVVFLDEPTSGLDAAAAANIMFYLKEVaKAESIAILCTIHQPS 376
                 689************************98775266777787778888888877666655.5689***************99888887762234445667899999999999976665111115679*********************************9999998888762466777888888654 PP

  == domain 2    score: -2.1 bits;  conditional E-value: 4.8
   TIGR01288  84 qfdnld.reftvrenllvfgryfgl....streie 113
                 q+ + d + + vr  ++vfg  f +    str++e
  MMETSP1137-20121227|2584_1 471 QISDADpLSYLVRAVMIVFGTMFFItiyaSTRKLE 505
                 444443157899999*****988652333577766 PP

>> TIGR03005  ectoine_ehuA: ectoine/hydroxyectoine ABC transporter, ATP-binding protein EhuA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.6   0.1   3.6e-18   2.3e-16      14     225 ..     190     394 ..     178     406 .. 0.72

  Alignments for each domain:
  == domain 1    score: 57.6 bits;  conditional E-value: 3.6e-18
   TIGR03005  14 tvldglelevaaGekvaliGpsGsGkstilrilmtletide..GsikvegeqlyhmkgrkGklvpadekhlrkvrekiGmvfqsfnlfphktvldnvtea.pvlvkGvaraeaekravelldmvGladka.....dalpaqlsGGqkqrvaiaralalrpkvllfdevtsaldpelveevlnvlrrlasetdltmllvthemgfar.efadrvlffdkGki 225
                 ++ld+l+ +v+aG  +a++GpsG+Gk+t+l +lm  +t  +  G + + g++ +                    + +  +v q+  l+   +  d +  a  +     ++ae ++   +l++  Gl   +     + +   lsGGqk+r+++a al+ rp+v+++de+ts ld     +++  l+++a+ + +++l   h+   a  +  d+vlf+  G+ 
  MMETSP1137-20121227|2584_1 190 KLLDDLSGTVEAGSVLAIMGPSGAGKTTLLNMLMLEDTGGDprGVVALGGNEFTL----------------DTYKRHACVVQQTDTLWWPLSPRDHIGYAvRMYQPTFTKAEQRDLVEKLIKKTGLESCKntkagNVFFKGLSGGQKRRLSLAIALSKRPHVVFLDEPTSGLDAAAAANIMFYLKEVAKAESIAILCTIHQPSTAVfNGFDKVLFLTSGRP 394
                 579*******************************655543322555555444433................3333333444444444444444444444312444445555555555556666666443201111456778************************************************************988752677******99985 PP

>> TIGR02770  nickel_nikD: nickel import ATP-binding protein NikD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.4   0.0   6.5e-20   4.2e-18       2     202 ..     192     392 ..     191     404 .. 0.81

  Alignments for each domain:
  == domain 1    score: 63.4 bits;  conditional E-value: 6.5e-20
   TIGR02770   2 vqdvnlslkrgkvlalvGesGsGksltalailglldkeltktsGeilldgkelaalalrgreialilqnPrsafnPlltikeqlletlkalekls..kqakelivealeavgLeeaeevl..kkypfelsGGmlqRvmialallleaplliaDePttdlDvvvqaevLklleelrekrglgillithDlg.vvaeladevavmekG 202
                  +d++ ++  g vla++G sG+Gk++  l +l +l+      +G ++l g+e++  +++  + a+++q+  + + Pl   ++++  ++++ + +   ++ ++l+ + ++++gLe  ++    + +   lsGG   R+ +a+al  ++ +++ DePt+ lD++++a+++ +l+e+ + ++++il   h  +  v +  d+v+ +++G
  MMETSP1137-20121227|2584_1 192 LDDLSGTVEAGSVLAIMGPSGAGKTTL-LNML-MLEDTGGDPRGVVALGGNEFTLDTYK--RHACVVQQTDTLWWPLS-PRDHIGYAVRMYQPTFtkAEQRDLVEKLIKKTGLESCKNTKagNVFFKGLSGGQKRRLSLAIALSKRPHVVFLDEPTSGLDAAAAANIMFYLKEVAKAESIAILCTIHQPStAVFNGFDKVLFLTSG 392
                 6789999*****************854.4444.455577899**********9887775..34778899999999985.58899888888776552355567788889******98876511566668*******************************************************99887431344555555555555 PP

>> TIGR01166  cbiO: cobalt ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.6   0.0   1.1e-19   7.1e-18       6     183 ..     190     370 ..     187     375 .. 0.80

  Alignments for each domain:
  == domain 1    score: 62.6 bits;  conditional E-value: 1.1e-19
   TIGR01166   6 evlkglnlavergevlallGanGaGkstlllhl..nGllrPksGkvlldGeeldysrkgllelrkkvalvlqdpddqlfaadvdedvafgplnl..Glseaeverrvrealaavdisgleerp.....thllsgGekkrvaiagavalrpdvllldePtagldpaGaeqlleilrklreeGktvvis 183
                 + l++l+ +ve g+vla++G+ GaGk+tll++l  + +     G v l+G+e   +      + k+ a+v+q++d   +  +  + + ++ +      ++ae +  v++ +++ +++  ++        + lsgG+k+r+++a a++ rp+v++ldePt+gld+a a +++  l+++ ++    +++
  MMETSP1137-20121227|2584_1 190 KLLDDLSGTVEAGSVLAIMGPSGAGKTTLLNMLmlEDTGGDPRGVVALGGNEFTLD------TYKRHACVVQQTDTLWWPLSPRDHIGYAVRMYqpTFTKAEQRDLVEKLIKKTGLESCKNTKagnvfFKGLSGGQKRRLSLAIALSKRPHVVFLDEPTSGLDAAAAANIMFYLKEVAKAESIAILC 370
                 579999***********************987611555556678999999998754......4566688999999888777888889888775522577888899999999999999887754122224679****************************************999998766555554 PP

>> TIGR03522  GldA_ABC_ATP: gliding motility-associated ABC transporter ATP-binding subunit GldA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.7   0.0   1.2e-19   8.1e-18      15     199 ..     189     380 ..     175     396 .. 0.82

  Alignments for each domain:
  == domain 1    score: 62.7 bits;  conditional E-value: 1.2e-19
   TIGR03522  15 qkaldevsfeaekGeivGflGPnGaGkstlmkiltgylkads....GsvavagedvlknslevrkniGylPehnPlyldlyvreylefsaalyklkgrklkkr..veelielvGlkaeqhkkiga.....lskGyrqrvGlakallhdPkvlildePttGldPnqlveirevikeiakdktvilsthimqevealc 199
                 +k ld++s ++e G+++  +GP GaGk+tl+ +l   l+ ++    G va+ g++ + ++ +  ++   + + + l+  l  r+++ +   +y+ + +k ++r  ve+li+++Gl++ +  k g+     ls G ++r  la al   P+v+ ldePt+Gld     +i   +ke+ak+ ++ +   i q   a+ 
  MMETSP1137-20121227|2584_1 189 RKLLDDLSGTVEAGSVLAIMGPSGAGKTTLLNMLM--LEDTGgdprGVVALGGNEFTLDTYK--RHACVVQQTDTLWWPLSPRDHIGYAVRMYQPTFTKAEQRdlVEKLIKKTGLESCKNTKAGNvffkgLSGGQKRRLSLAIALSKRPHVVFLDEPTSGLDAAAAANIMFYLKEVAKAESIAILCTIHQPSTAVF 380
                 6789**************************99875..4443311126788888888888765..5556688999*******************977666555444************999998764444479999**********************************************999888999888885 PP

>> TIGR01187  potA: polyamine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.5   0.0   2.4e-19   1.5e-17       1     177 [.     207     392 ..     207     404 .. 0.83

  Alignments for each domain:
  == domain 1    score: 61.5 bits;  conditional E-value: 2.4e-19
   TIGR01187   1 lLGpsGsGkttlLrllaGlee..ldsGkilldgedvtevpaekrsvnvvfqsyaLfPhmtveenvafgLkmrk..vpkaeikervkeaLelvqleefakrkp.....sqlsGGqrqrvalaravvkkPkiLLlDeplsaLDkkLrdqmqlelkalqeklGitvvlvthDqeealtm.sdriavlrkG 177
                 ++GpsG+GkttlL +l   ++     G + l+g++ t   ++kr+  vv q   L+  ++  + + ++++m +    kae ++ v+++++   le   + k      + lsGGq++r++la a+ k+P++++lDep s LD     ++   lk++ +   i+++   h  + a+    d++  l +G
  MMETSP1137-20121227|2584_1 207 IMGPSGAGKTTLLNMLMLEDTggDPRGVVALGGNEFTL-DTYKRHACVVQQTDTLWWPLSPRDHIGYAVRMYQptFTKAEQRDLVEKLIKKTGLESCKNTKAgnvffKGLSGGQKRRLSLAIALSKRPHVVFLDEPTSGLDAAAAANIMFYLKEVAKAESIAILCTIHQPSTAVFNgFDKVLFLTSG 392
                 69***********99875444114589********986.689****************************9762257888888899999988888777666522222679************************************9999******9999999999998888764314666666666 PP

>> TIGR03797  NHLM_micro_ABC2: NHLM bacteriocin system ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.9   0.0   1.1e-18   7.4e-17     467     671 ..     190     403 ..     184     407 .. 0.80

  Alignments for each domain:
  == domain 1    score: 58.9 bits;  conditional E-value: 1.1e-18
   TIGR03797 467 lvLddvslkiepGefvaivGaSGsGKStllrlLLgFekPe..sGsvlyDGqdlekldvqavRrqlGvVLQngrll.sgsileniaggasltldeaweaarmagleeDikamPmglhTvisegg...gtlSGGQrQRlliAralvrkPrillfDEATSALDNrtQaiVseslekl.kvtRivi...AHRLST.i.rnadrilvleeGrvveqGsyeeL 671
                 + Ldd+s ++e+G  +ai+G+SG+GK tll +L+  ++     G v+  G++ + ld    +r+  vV Q   l  + s  + i  ++++ +    +a ++  +e+ ik+  +      + g    ++lSGGQ+ Rl +A al ++P+++++DE TS LD  + a ++  l+++ k+  i+i    H  ST + +  d++l l  Gr +  G   +L
  MMETSP1137-20121227|2584_1 190 KLLDDLSGTVEAGSVLAIMGPSGAGKTTLLNMLMLEDTGGdpRGVVALGGNEFT-LD--TYKRHACVVQQTDTLWwPLSPRDHIGYAVRMYQPTFTKAEQRDLVEKLIKKTGLESCKNTKAGNvffKGLSGGQKRRLSLAIALSKRPHVVFLDEPTSGLDAAAAANIMFYLKEVaKAESIAIlctIHQPSTaVfNGFDKVLFLTSGRPAYLGPAAQL 403
                 689******************************9988865237*******9974.56..568999999998887526777888888888999999999999999******8777766666665444689************************************9998888762344455422268888843134588888888887777776666 PP

>> TIGR00960  3a0501s02: type II secretory pathway family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.5   0.0     6e-19   3.9e-17      17     197 ..     190     374 ..     177     393 .. 0.80

  Alignments for each domain:
  == domain 1    score: 60.5 bits;  conditional E-value: 6e-19
   TIGR00960  17 laldnvtvkiekGelvflvGhsGaGkstllklilgiekp..saGkirvsgqdltklrdrevpflrrqiGivfqdfkllsdrtvydnvalalriiGvkgreieer..vsaalekvGlkdkaka.....lPvqlsgGeqqrvaiaravvnkPallladePtgnlddelsrdilelleevnraGt.tvlvathd 197
                   ld+++  +e G++  ++G+sGaGk+tll++++  ++    +G + + g++ t      +   +r+  +v q   l    +  d +  a+r+   +  ++e+r  v++ ++k Gl+  +++     + + lsgG+++r+++a a+ ++P++++ dePt+ ld + + +i+  l+ev +a   ++l + h+
  MMETSP1137-20121227|2584_1 190 KLLDDLSGTVEAGSVLAIMGPSGAGKTTLLNMLMLEDTGgdPRGVVALGGNEFT------LDTYKRHACVVQQTDTLWWPLSPRDHIGYAVRMYQPTFTKAEQRdlVEKLIKKTGLESCKNTkagnvFFKGLSGGQKRRLSLAIALSKRPHVVFLDEPTSGLDAAAAANIMFYLKEVAKAESiAILCTIHQ 374
                 469****************************99987765226899999998775......556789999***********************998766666554449999******9765541111245779*********************************************98765045555565 PP

>> TIGR02769  nickel_nikE: nickel import ATP-binding protein NikE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.6   0.0   2.2e-18   1.4e-16      24     247 ..     189     412 ..     175     420 .. 0.80

  Alignments for each domain:
  == domain 1    score: 58.6 bits;  conditional E-value: 2.2e-18
   TIGR02769  24 kavldnvslsleeGetvallGrsGaGkstlarlllGlek..PakGevsfrGqdlakldrkqrkafrrdvqlvfqdsisavnprksvreiigePlrhlt.sldeserkariaellelvelrsevldklP....rqlsGGqlqriniaralavePklivldeavsnldlvlqasilellkklkqefGlaylfithdlr.lvqkfaqrvlvldeGqiveeikvaellsfkhpagr 247
                 +++ld++s ++e+G  +a++G sGaGk+tl  +l+  +     +G v   G++ + ld+      +r+  +v q + +   p  s r  ig  +r ++ ++ ++e+++ +++l+++ +l+s +  k      + lsGGq +r+++a al+ +P+++ lde  s ld    a+i+  lk++ ++  +a+l   h  + +v +  ++vl l  G+     + a+l+sf + ag+
  MMETSP1137-20121227|2584_1 189 RKLLDDLSGTVEAGSVLAIMGPSGAGKTTLLNMLMLEDTggDPRGVVALGGNEFT-LDTY-----KRHACVVQQ-TDTLWWP-LSPRDHIGYAVRMYQpTFTKAEQRDLVEKLIKKTGLESCKNTKAGnvffKGLSGGQKRRLSLAIALSKRPHVVFLDEPTSGLDAAAAANIMFYLKEVAKAESIAILCTIHQPStAVFNGFDKVLFLTSGRPAYLGPAAQLVSFLERAGK 412
                 5789**************************9988743331135788888888765.6654.....555555544.4444444.45667777788888646899*****************988888652222689******************************************************9999865267777899999999998888888888888777776 PP

>> TIGR03410  urea_trans_UrtE: urea ABC transporter, ATP-binding protein UrtE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.1   0.0   2.8e-18   1.8e-16      14     209 ..     190     393 ..     185     404 .. 0.80

  Alignments for each domain:
  == domain 1    score: 58.1 bits;  conditional E-value: 2.8e-18
   TIGR03410  14 evlrdvslevekgevvavlGrngvGkttllkalvgllk..vksGeielegeditklkpeervkaGiayvpqGreifpkltveenlelglealkkk.....ekkipeeiyelFPvlkemlkRrgGd.....LsGGqqqqlaiaRaLvtePklllLDePteGiqPsiikeiekvikelakekdlaillv.eqvldfaleladrylvlerGe 209
                 ++l d+s +ve+g+v+a++G  g+Gkttll  l+   +    +G ++l g+++t   +++r       v q  ++   l+ ++ +  ++++ + +     ++++ e++ +    l++ ++ ++G+     LsGGq+  l++a aL ++P+++ LDePt G+  +  ++i   +ke+ak + +ail    q    + +  d++l l  G+
  MMETSP1137-20121227|2584_1 190 KLLDDLSGTVEAGSVLAIMGPSGAGKTTLLNMLMLEDTggDPRGVVALGGNEFTLD-TYKRH---ACVVQQTDTLWWPLSPRDHIGYAVRMYQPTftkaeQRDLVEKLIKK-TGLESCKNTKAGNvffkgLSGGQKRRLSLAIALSKRPHVVFLDEPTSGLDAAAAANIMFYLKEVAKAESIAILCTiHQPSTAVFNGFDKVLFLTSGR 393
                 57899999***********************9996554116789*******99755.44443...367999*************999888766554322244444444444.4699********8777778*****************************************************9751444455555566666666665 PP

>> TIGR02314  ABC_MetN: D-methionine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.9   0.0   2.9e-18   1.9e-16      19     200 ..     190     374 ..     176     398 .. 0.79

  Alignments for each domain:
  == domain 1    score: 57.9 bits;  conditional E-value: 2.9e-18
   TIGR02314  19 kaldnvslfvpkgqifgvigasgagkstlircvnllekpt..sgavivdgkdlttlsnaelvkarrqigmifqhfnl...lssrtvfgnvalplelentpkekikrkvtellalvglsdkkdsypsn.....lsggqkqrvaiaralasepkvllcdeatsaldpattqsilellkeinrrlgltillithe 200
                 k ld++s  v +g ++ ++g sgagk+tl+  + l ++     g v + g+++t      l + +r+  ++ q   l   ls r  +g  a+ +   + +k + +  v++l+   gl   k++   n     lsggqk+r+++a al+  p+v++ de ts ld a++  i+  lke+ +  +++il   h+
  MMETSP1137-20121227|2584_1 190 KLLDDLSGTVEAGSVLAIMGPSGAGKTTLLNMLMLEDTGGdpRGVVALGGNEFT------LDTYKRHACVVQQTDTLwwpLSPRDHIGY-AVRMYQPTFTKAEQRDLVEKLIKKTGLESCKNTKAGNvffkgLSGGQKRRLSLAIALSKRPHVVFLDEPTSGLDAAAAANIMFYLKEVAKAESIAILCTIHQ 374
                 6799**************************988766665422467777777776......55678888888888777333566655543.44555555667777777999*******9988876665444448******************************************************99886 PP

>> TIGR03771  anch_rpt_ABC: anchored repeat-type ABC transporter, ATP-binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.9   0.0   3.8e-18   2.5e-16       3     185 ..     199     388 ..     198     402 .. 0.74

  Alignments for each domain:
  == domain 1    score: 57.9 bits;  conditional E-value: 3.8e-18
   TIGR03771   3 vdkGellgllGpnGaGkttllrailglik...vakGsvkvagkssr.kgrreiGyvpqrhefawdfpidveqtvlsGragliGllrrpkkadfaavadalervklteladrpvGe.....lsGGqrqrvlvaralavkpslllldepftGldlpsqellvelfeelageg.tailmtthdlaeav.atcdrvvl 185
                 v++G +l+++Gp GaGkttll   l l       +G v ++g+  + + +++   v q+ +  w +p++ ++ +          + ++++ d   v++ +++  l+  ++   G+     lsGGq++r+ +a al+ +p++++ldep +Gld  +  +++  ++e+a+++  ail t h+ + av +  d+v++
  MMETSP1137-20121227|2584_1 199 VEAGSVLAIMGPSGAGKTTLLNM-LMLEDtggDPRGVVALGGNEFTlDTYKRHACVVQQTDTLW-WPLSPRDHIGYAVRMYQPTFTKAEQRDL--VEKLIKKTGLESCKNTKAGNvffkgLSGGQKRRLSLAIALSKRPHVVFLDEPTSGLDAAAAANIMFYLKEVAKAEsIAILCTIHQPSTAVfNGFDKVLF 388
                 689*****************975.4444311246899**9998754255566666777777777.7999988774333333445666666654..66677777777776666665333449*********************************************987626899999*999887234566655 PP

>> TIGR01978  sufC: FeS assembly ATPase SufC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.0   0.0   2.5e-17   1.6e-15      13     228 ..     189     399 ..     183     412 .. 0.82

  Alignments for each domain:
  == domain 1    score: 55.0 bits;  conditional E-value: 2.5e-17
   TIGR01978  13 keiLkglnlevkkGevhaimGpnGsGkstLskvlaghekyevtsGeiklkgqdlleleveeraraGlflafqapeeipGvsnkeflrsalnavrkargeeeldllefekllkeklelleldeelleRslneGfsGGekkrneilqlallePklaiLDeiDsGlDvDalkivaegvnklreeekalliit.hyerllelikPdvvhvlldGrivksGd 228
                 +++L++l+ +v++G v aimGp G+Gk tL ++l+ +++    +G ++l g++   l++  r      +  q+ +    +s ++ +  a+   + +  +   ++++  ++l +k+ l +++++ +     +G sGG k+r  +   +  +P+++ LDe  sGlD  a   ++  ++++++ e+  ++ t h+         d+v  l++Gr +  G 
  MMETSP1137-20121227|2584_1 189 RKLLDDLSGTVEAGSVLAIMGPSGAGKTTLLNMLMLEDTGGDPRGVVALGGNEF-TLDTYKRHA---CVVQQTDTLWWPLSPRDHIGYAVRMYQPTFTK--AEQRDLVEKLIKKTGLESCKNTKAGNVFFKGLSGGQKRRLSLAIALSKRPHVVFLDEPTSGLDAAAAANIMFYLKEVAKAESIAILCTiHQPSTAVFNGFDKVLFLTSGRPAYLGP 399
                 689**********************************************99876.466666644...3557777778889*******999999844333..467888888888888888888888888999*************9999*****************************9998665555551555555555579999999998777664 PP

>> TIGR03411  urea_trans_UrtD: urea ABC transporter, ATP-binding protein UrtD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.8   0.0   1.6e-17   1.1e-15      18     197 ..     192     368 ..     189     374 .. 0.87

  Alignments for each domain:
  == domain 1    score: 55.8 bits;  conditional E-value: 1.6e-17
   TIGR03411  18 lndlslsveegelrviiGpnGaGkttllDvitGk.tr.pdeGsvlfkgkdltklkeaeiarlGigRkfqkpsvfeeltvlenlelalkadksvlallfarlskeekerieevleligLeekadkkagl.....LshGqkqwLeigmllvqepkllllDePvaGmtdeetektaellkelakersvvv 197
                 l+dls +ve+g++ +i+Gp GaGkttll++++   t    +G v + g+++t  + ++ a    +   q+ +++  l+ ++ +  a+++ + +++      ++e+++ +e++++ +gLe+ +++kag+     Ls Gqk +L +++ l ++p++++lDeP++G+ ++  +++   lke+ak +s+ +
  MMETSP1137-20121227|2584_1 192 LDDLSGTVEAGSVLAIMGPSGAGKTTLLNMLMLEdTGgDPRGVVALGGNEFTLDTYKRHA----CVVQQTDTLWWPLSPRDHIGYAVRMYQPTFT------KAEQRDLVEKLIKKTGLESCKNTKAGNvffkgLSGGQKRRLSLAIALSKRPHVVFLDEPTSGLDAAAAANIMFYLKEVAKAESIAI 368
                 799999***********************98754133145799*****998866655544....33469*****************998887765......5689999******************97666668************************************************99976 PP

>> TIGR01846  type_I_sec_HlyB: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.0   0.0   1.5e-17   9.9e-16     471     679 ..     190     404 ..     152     409 .. 0.76

  Alignments for each domain:
  == domain 1    score: 55.0 bits;  conditional E-value: 1.5e-17
   TIGR01846 471 evlsnlsldikaGeviGivGpsGsGkstltkllqrlyv..PekGrvlvdgvdlaladPawlrrqvgvvlqenvlf.srsirdnialakPaiseekviaaaklaGahdfise..lkqGyetevgekG.aalsGGqrqrialaralvanPrilildeatsaldyeseavimrnlreickgrtv..iiiahrlst..vraadrilvlekGkivesGkheell 679
                 ++l++ls  ++aG v+ i+GpsG+Gk+tl  +l    +    +G v + g +++l    + +r+  vv q + l+   s rd i  a   + +    +a +    +++i++  l+   +t+ g+     lsGGq++r++la al + P+++ lde ts ld+ + a im  l+e++k+  +  ++  h+ st      d++l l  G+ +  G  ++l+
  MMETSP1137-20121227|2584_1 190 KLLDDLSGTVEAGSVLAIMGPSGAGKTTLLNMLMLEDTggDPRGVVALGGNEFTL---DTYKRHACVVQQTDTLWwPLSPRDHIGYAV-RMYQPTFTKAEQRDLVEKLIKKtgLESCKNTKAGNVFfKGLSGGQKRRLSLAIALSKRPHVVFLDEPTSGLDAAAAANIMFYLKEVAKAESIaiLCTIHQPSTavFNGFDKVLFLTSGRPAYLGPAAQLV 404
                 5799************************999877666621457889999999876...478999****99877752679999987664.44455555555555555555432244555555554321459**********************************************9987611556788776324678999999999877777666665 PP

>> TIGR02203  MsbA_lipidA: lipid A export permease/ATP-binding protein MsbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.8   0.0   1.9e-17   1.2e-15     346     555 ..     189     403 ..     161     411 .. 0.77

  Alignments for each domain:
  == domain 1    score: 54.8 bits;  conditional E-value: 1.9e-17
   TIGR02203 346 realdsislkveaGevvalvGrsGsGkstlvnllpR..FyepdsGeillDgvdladlkLasLRrqvalvsqdvvLF.ddtiaenvaYgeleevdeaeveealaaaylkdlvdk..lpeGldtevGengsk.LsGGqRqRlaiaRallkdaPiLiLDeatsaLDneseRlvqaaLerlmkgRtt..lviahRLst..iekaDrivvlddGkiverGtheeL 555
                 r+ ld++s +veaG v+a++G+sG+Gk+tl+n+l         +G + l g+   +++L++ +r+  +v q  +L+   +  + ++Y+ +  + +    +a +   +++l+ k  l++  +t+ G+   k LsGGq+ Rl++a al k   ++ LDe ts LD+ +  ++   L+++ k      l   h  st   +  D+++ l +G+    G+  +L
  MMETSP1137-20121227|2584_1 189 RKLLDDLSGTVEAGSVLAIMGPSGAGKTTLLNMLMLedTGGDPRGVVALGGN---EFTLDTYKRHACVVQQTDTLWwPLSPRDHIGYAVR--MYQPTFTKAEQRDLVEKLIKKtgLESCKNTKAGNVFFKgLSGGQKRRLSLAIALSKRPHVVFLDEPTSGLDAAAAANIMFYLKEVAKAESIaiLCTIHQPSTavFNGFDKVLFLTSGRPAYLGPAAQL 403
                 7889****************************98530022334566777775...789*************8888625678899999987..5555556666665666666542233444566666543349******************************************9998876541145579988843477899999999987776666666 PP

>> TIGR03740  galliderm_ABC: lantibiotic protection ABC transporter, ATP-binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.5   0.0   4.1e-17   2.6e-15      13     182 ..     189     373 ..     177     397 .. 0.76

  Alignments for each domain:
  == domain 1    score: 54.5 bits;  conditional E-value: 4.1e-17
   TIGR03740  13 qavvnnvslkvkknsvygllGpnGaGkstllklltGllrkt....sGeilldgrewtrkdlkkiGslie.sPalyenltarenlkvrtll......lglpesrieevlkivdlentekkkakq.....fslGmkqrlGiaiallnkPkllildePtnGldPlGiqelreliksf.pekGitvilssh 182
                 +++++++s +v+  sv +++Gp GaGk+tll +l  +l++t     G + l g+e+t    k   ++++ + +l+  l+ r+ +   + +      ++ +++ +e+++k+ +le+ +  ka++     +s G k+rl +aial ++P+++ ldePt Gld     ++   +k + + + i+++ + h
  MMETSP1137-20121227|2584_1 189 RKLLDDLSGTVEAGSVLAIMGPSGAGKTTLLNML--MLEDTggdpRGVVALGGNEFTLDTYKRHACVVQqTDTLWWPLSPRDHIGYAVRMyqptftKAEQRDLVEKLIKKTGLESCKNTKAGNvffkgLSGGQKRRLSLAIALSKRPHVVFLDEPTSGLDAAAAANIMFYLKEVaKAESIAILCTIH 373
                 67899***************************99..67776122256799********99998887776167899*******98644433111110333445589999******9999998763222258899***************************998888766665541445666666555 PP

>> TIGR03719  ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.3   0.0   1.8e-08   1.2e-06     326     382 ..     180     238 ..     157     270 .. 0.77
   2 !   25.6   0.0   1.4e-08   9.2e-07     159     207 ..     312     360 ..     284     373 .. 0.88

  Alignments for each domain:
  == domain 1    score: 25.3 bits;  conditional E-value: 1.8e-08
   TIGR03719 326 enlskafgdklliddlsfklpkggivGviGpnGaGkstlfklitgkek..pdsGelkiG 382
                 ++ +k+   + l+ddls ++ +g+++ ++Gp GaGk+tl+++++ +++  + +G + +G
  MMETSP1137-20121227|2584_1 180 KKGEKGKVPRKLLDDLSGTVEAGSVLAIMGPSGAGKTTLLNMLMLEDTggDPRGVVALG 238
                 45556666789*******************************99877622345777765 PP

  == domain 2    score: 25.6 bits;  conditional E-value: 1.4e-08
   TIGR03719 159 veklsGGekrrvalcrlllekPdlllldePtnhldaesvaWlekflkey 207
                  + lsGG+krr++l+  l ++P +++ldePt  lda + a +  +lke 
  MMETSP1137-20121227|2584_1 312 FKGLSGGQKRRLSLAIALSKRPHVVFLDEPTSGLDAAAAANIMFYLKEV 360
                 5779********************************9999888888875 PP

>> TIGR03269  met_CoM_red_A2: methyl coenzyme M reductase system, component A2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.1   2.2e-05    0.0015      14      47 ..     190     223 ..     180     235 .. 0.88
   2 !   35.7   0.0   1.2e-11     8e-10     167     257 ..     313     404 ..     246     415 .. 0.87

  Alignments for each domain:
  == domain 1    score: 15.0 bits;  conditional E-value: 2.2e-05
   TIGR03269  14 evlknisleleeGevlGilGksGaGksvllhllr 47 
                 + l ++s ++e G vl i+G sGaGk+ ll++l 
  MMETSP1137-20121227|2584_1 190 KLLDDLSGTVEAGSVLAIMGPSGAGKTTLLNMLM 223
                 568899999**********************995 PP

  == domain 2    score: 35.7 bits;  conditional E-value: 1.2e-11
   TIGR03269 167 rdlsGGekqrvvlarqlakeplllladeptGtldpktaklvhealkeavkeedislvltshwpev.iedlsdkaillekGeiveeGepeevv 257
                 + lsGG+k+r+ la  l+k+p +++ dept  ld  +a  +   lke +k+e+i+++ t h p   + +  dk ++l  G     G + ++v
  MMETSP1137-20121227|2584_1 313 KGLSGGQKRRLSLAIALSKRPHVVFLDEPTSGLDAAAAANIMFYLKEVAKAESIAILCTIHQPSTaVFNGFDKVLFLTSGRPAYLGPAAQLV 404
                 679***********************************99999******************9964256677888999888877777666655 PP

>> TIGR01257  rim_protein: rim ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.8   0.0   2.2e-16   1.4e-14     943    1136 ..     189     392 ..     169     403 .. 0.79

  Alignments for each domain:
  == domain 1    score: 49.8 bits;  conditional E-value: 2.2e-16
   TIGR01257  943 rpavdrlnitfyenqitaflghngagktttlsilt..gllpptsgtvlvggkdietnldavrqslgmcpqhnilfhhltvaehilfyaqlkgrsweea..qlemeamledtglhhkrneea.....qdlsgglqrklsvaiafvgdakvvvldeptsgvdpysrrsiwdlllkyrsgrti.imsthhmdeadll.g.driaiisqg 1136
                  r  +d l  t+    + a++g  gagktt l +l          g v +gg+  e +ld+ ++   ++ q + l+  l+  +hi +  ++   ++ +a  +  +e +++ tgl   +n +a     + lsgg +r+ls+aia+    +vv ldeptsg+d  +   i   l       +i i+ t h   + ++ g d++  ++ g
  MMETSP1137-20121227|2584_1  189 RKLLDDLSGTVEAGSVLAIMGPSGAGKTTLLNMLMleDTGGDPRGVVALGGN--EFTLDTYKRHACVVQQTDTLWWPLSPRDHIGYAVRMYQPTFTKAeqRDLVEKLIKKTGLESCKNTKAgnvffKGLSGGQKRRLSLAIALSKRPHVVFLDEPTSGLDAAAAANIMFYLKEVAKAESIaILCTIHQPSTAVFnGfDKVLFLTSG 392 
                  667788899999999***************9987411333444689999998..568****************************999998877766521345899*********99999844444679*********************************99999877776655544426677665544443134555555555 PP

>> TIGR02324  CP_lyasePhnL: phosphonate C-P lyase system protein PhnL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   0.0     1e-06   6.6e-05      18      55 ..     186     223 ..     171     246 .. 0.89
   2 !   26.7   0.0   1.1e-08   7.4e-07     150     208 ..     315     374 ..     306     381 .. 0.86

  Alignments for each domain:
  == domain 1    score: 20.3 bits;  conditional E-value: 1e-06
   TIGR02324  18 GvklpvlkevsleveaGelvalsGksGaGkstllksly 55 
                  v ++ l+++s +veaG ++a++G+sGaGk tll +l 
  MMETSP1137-20121227|2584_1 186 KVPRKLLDDLSGTVEAGSVLAIMGPSGAGKTTLLNMLM 223
                 45677899999***********************9985 PP

  == domain 2    score: 26.7 bits;  conditional E-value: 1.1e-08
   TIGR02324 150 fsGGekqRvniaraliadrPiLLLdePtasLdaanrkvvvelike.akargaaligifhd 208
                  sGG k+R+ +a al +   ++ LdePt+ Ldaa  + ++  +ke aka+ +a++  +h+
  MMETSP1137-20121227|2584_1 315 LSGGQKRRLSLAIALSKRPHVVFLDEPTSGLDAAAAANIMFYLKEvAKAESIAILCTIHQ 374
                 79**************9666889**********99988877777637999*****99997 PP

>> TIGR03796  NHLM_micro_ABC1: NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.8   0.0   4.2e-15   2.7e-13     492     688 ..     189     393 ..     184     407 .. 0.74

  Alignments for each domain:
  == domain 1    score: 46.8 bits;  conditional E-value: 4.2e-15
   TIGR03796 492 apliedfslslkpGqrvAlvGgsGsGkstiaklva..GlyepwsGeilfDgkpreeiprevlanslalvdq.divlfegtvrdnltlwdetipeedlvrAakDAaihdvilarpggyeaelaegg...anlsGGqrqRleiARaLvknPsiLilDEatsaLDaetEkaidenlrr....RgctciivaHRLst..iRdcdeiivlerGk 688
                 ++l++d+s +++ G+ +A++G+sG+Gk t+  ++       + +G +++ g+   e++ ++ +    +v+q d + +  + rd +  +   + +  +++A +   ++  i ++  +  ++ + g    + lsGGq+ Rl +A aL k+P ++ lDE ts LDa++  +i+  l++      ++++   H  st      d+++ l  G+
  MMETSP1137-20121227|2584_1 189 RKLLDDLSGTVEAGSVLAIMGPSGAGKTTLLNMLMleDTGGDPRGVVALGGN---EFTLDTYKRHACVVQQtDTLWWPLSPRDHIG-YAVRMYQPTFTKAEQRDLVEKLIKKTGLESCKNTKAGNvffKGLSGGQKRRLSLAIALSKRPHVVFLDEPTSGLDAAAAANIMFYLKEvakaESIAILCTIHQPSTavFNGFDKVLFLTSGR 393
                 689***************************9887411333455677888775...5666777777788888345556789999997.67778888889998888888888777666666666655333468**************************************9888752211345566666777763224566666666666 PP

>> TIGR01186  proV: glycine betaine/L-proline transport ATP binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.0   0.0   1.3e-14   8.2e-13      10     189 ..     193     374 ..     184     400 .. 0.77

  Alignments for each domain:
  == domain 1    score: 46.0 bits;  conditional E-value: 1.3e-14
   TIGR01186  10 ndvdleieeGeiiviiGlsGsGkstlvrllnrliePtaGkilidGediaeisdaelrevrrkkiamviqkialfPhmtildnislglellk..ideqerkekalealklvdleeyedr.....yPdelsGGmqqrvGlaralaaePdlllmdeafsaldPlirdelqdelvklqkklqktivfithd 189
                 +d++  +e G ++ i+G+sG+Gk+tl+ +l  ++e t G     G+     ++  l +  ++  ++v q  +l    +  d i +++++ +  + + e+++   +++k+ +le  +++     + + lsGG+++r+ la al+  P ++++de+ s ld     ++   l+++ k  + +i+   h 
  MMETSP1137-20121227|2584_1 193 DDLSGTVEAGSVLAIMGPSGAGKTTLLNML--MLEDTGGDP--RGVVALGGNEFTL-DTYKRHACVVQQTDTLWWPLSPRDHIGYAVRMYQptFTKAEQRDLVEKLIKKTGLESCKNTkagnvFFKGLSGGQKRRLSLAIALSKRPHVVFLDEPTSGLDAAAAANIMFYLKEVAKAESIAILCTIHQ 374
                 56677899******************9998..689998853..3444444444555.4445555556666688888999******999976336788888889999******988765222237789********************************9998888888888877777777666665 PP

>> TIGR01192  chvA: glucan exporter ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.1   0.0   3.7e-14   2.4e-12     351     549 ..     192     396 ..     150     411 .. 0.72

  Alignments for each domain:
  == domain 1    score: 44.1 bits;  conditional E-value: 3.7e-14
   TIGR01192 351 vrdvsfeakagqtvaivgptgagkttlinllqr..vydpksgqilidgvdiatvtreslrksiatvfqdagll....nr.sirenirlgredatdeevveaakaaaasdfiekrlkgydtlvgergnrlsggerqrlaiarailknapilvldeatsaldvetearvkdaidalrknrttfii..ahrlst.v.readlvlfldqgrlie 549
                 + d+s ++ ag  +ai+gp+gagkttl+n+l          g + + g +    t ++ ++    v q   l      r  i+  +r+ + + t++e  +  +    +  +e+  ++    v  +g  lsgg+++rl++a a+ k   ++ lde ts ld  + a +   +  + k  +  i+   h+ st v    d vlfl  gr   
  MMETSP1137-20121227|2584_1 192 LDDLSGTVEAGSVLAIMGPSGAGKTTLLNMLMLedTGGDPRGVVALGGNE---FTLDTYKRHACVVQQTDTLWwplsPRdHIGYAVRMYQPTFTKAEQRDLVEKLIKKTGLESCKNTKAGNVFFKG--LSGGQKRRLSLAIALSKRPHVVFLDEPTSGLDAAAAANIMFYLKEVAKAESIAILctIHQPSTaVfNGFDKVLFLTSGRPAY 396
                 5799*************************985311333446888888865...4556666665555555444322222214666667777777777777777777777777776666666666655..9***************************************999999998887776225888884325679******999655 PP

>> TIGR02633  xylG: D-xylose ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.6   0.0   2.4e-11   1.6e-09     274     479 ..     190     392 ..     188     396 .. 0.58

  Alignments for each domain:
  == domain 1    score: 34.6 bits;  conditional E-value: 2.4e-11
   TIGR02633 274 krvddvsfslrrGeilGvaGlvGaGrtelvqalf.GaypGkfegevfldgkqvdirnpaqairagialv.pedrkrdGivpvlgvGknitlavlkkfakksrideaaelkaieeeikrlkvktaspdlpiarlsGGnqqkavlakllllnprvlildeptrGvdvGakyeiyklinqlaq.eGvaiiv.vsselaevlGlsdrvlvigeG 479
                 k +dd+s +++ G +l + G  GaG+t l++ l+     G   g v l g++  + +     ++  ++v   d     + p   +G  + +     f+k  +  +  e+ + +++++  k +t   ++   +lsGG++++  la  l+ +p+v+ ldept G+d  a ++i   ++++a+ e +ai+  +    + v+   d+vl +  G
  MMETSP1137-20121227|2584_1 190 KLLDDLSGTVEAGSVLAIMGPSGAGKTTLLNMLMlEDTGGDPRGVVALGGNEFTLDTY----KRHACVVqQTDTLWWPLSPRDHIGYAVRMYQ-PTFTKAEQ-RDLVEKLIKKTGLESCK-NTKAGNVFFKGLSGGQKRRLSLAIALSKRPHVVFLDEPTSGLDAAAAANIMFYLKEVAKaESIAILCtIHQPSTAVFNGFDKVLFLTSG 392
                 6677777777888888888888888877777765144556777777777777655443....3333444044444555555555554444322.23333322.22333333344444443.45555666777888888888888888888888888888888888888877766666664266776542444555666666666666666 PP

>> TIGR03415  ABC_choXWV_ATP: choline ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.7   0.0   1.5e-11   9.9e-10      42     197 ..     194     347 ..     183     373 .. 0.82

  Alignments for each domain:
  == domain 1    score: 35.7 bits;  conditional E-value: 1.5e-11
   TIGR03415  42 dasldveeGeilvlmGlsGsGkssllravn..glnpvsrGkvlvkdedkevdvakcdeatlrklrtkrvsmvfqkfallPW.rtveenvafGlels..GvakaerrkrveeqlelvglaeWadkkvge.....lsGGmqqrvGlarafateadillmdePfsaldP 197
                 d s +ve G +l +mG sG+Gk++ll  +         rG v +  ++ ++d +            kr + v q+   l W ++ ++ +++ + +     +kae+r+ ve+ ++  gl++ +++k+g+     lsGG ++r+ la a++    ++++deP s ld 
  MMETSP1137-20121227|2584_1 194 DLSGTVEAGSVLAIMGPSGAGKTTLLNMLMleDTGGDPRGVVALGGNEFTLDTY------------KRHACVVQQTDTLWWpLSPRDHIGYAVRMYqpTFTKAEQRDLVEKLIKKTGLESCKNTKAGNvffkgLSGGQKRRLSLAIALSKRPHVVFLDEPTSGLDA 347
                 67889********************97653003333345555555555555544............5567899999999996899*********9633689************************975444449******************************96 PP

>> TIGR02323  CP_lyasePhnK: phosphonate C-P lyase system protein PhnK
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.1   0.0   0.00017     0.011      25      48 ..     200     223 ..     192     232 .. 0.88
   2 !   22.2   0.0   2.6e-07   1.7e-05     140     197 ..     313     373 ..     295     398 .. 0.82

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 0.00017
   TIGR02323  25 ypGevlgivGesGsGkstllkala 48 
                   G vl+i+G sG+Gk+tll+ l 
  MMETSP1137-20121227|2584_1 200 EAGSVLAIMGPSGAGKTTLLNMLM 223
                 579*****************9885 PP

  == domain 2    score: 22.2 bits;  conditional E-value: 2.6e-07
   TIGR02323 140 aafsGGmqqrlqiarnlvtrprlvfm.eptGGl.vsvqarll.llrglvrelglaviivth 197
                 + +sGG ++rl +a +l  rp++vf+ ept Gl  +  a ++  l+++ +  ++a++   h
  MMETSP1137-20121227|2584_1 313 KGLSGGQKRRLSLAIALSKRPHVVFLdEPTSGLdAAAAANIMfYLKEVAKAESIAILCTIH 373
                 568******************************8778888886788888888888887777 PP

>> TIGR01193  bacteriocin_ABC: ABC-type bacteriocin transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.6   0.0     1e-10   6.5e-09     486     659 ..     188     362 ..     152     405 .. 0.65

  Alignments for each domain:
  == domain 1    score: 32.6 bits;  conditional E-value: 1e-10
   TIGR01193 486 gsevledislkikknekitlvGlsGsGkstlakllv.kff.qaesGeillngkslkdidkhelrqlinylPqePfifsGsilenlllgakenvsqeeikkaveiaeikddiek..lplGyqtelsee.assisgGqkqrlalarallsdskvlildestsnldlltekkivenllklkd 659
                  +++l+d+s ++++ ++++++G sG+Gk+tl  +l+ +    +  G + l+g ++      + +++   + q   ++   +     +g   ++ q + +ka +   +++ i+k  l+   +t+  +     +sgGqk+rl+la al    +v+ lde ts ld     +i+  l ++ +
  MMETSP1137-20121227|2584_1 188 PRKLLDDLSGTVEAGSVLAIMGPSGAGKTTLLNMLMlEDTgGDPRGVVALGGNEF---TLDTYKRHACVVQQTDTLWWP-LSPRDHIGYAVRMYQPTFTKAEQRDLVEKLIKKtgLESCKNTKAGNVfFKGLSGGQKRRLSLAIALSKRPHVVFLDEPTSGLDAAAAANIMFYLKEVAK 362
                 5789**************************9987651333367789999988653...344555555555555544432.2223334444455555555554444444444441123333444433213569********************************999999866655533 PP

>> TIGR01271  CFTR_protein: cystic fibrosis transmembrane conductor regulator (CFTR)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.0   9.8e-07   6.4e-05    1200    1299 ..     151     256 ..     136     266 .. 0.77
   2 !   10.2   0.0   0.00029     0.019     548     590 ..     314     356 ..     283     405 .. 0.72

  Alignments for each domain:
  == domain 1    score: 18.4 bits;  conditional E-value: 9.8e-07
   TIGR01271 1200 vlvienkhvkkiwpsggqmtvkdlta...kyteag...ravlqdlsfsveagqrvgllgrtgsgkstllsallrllstegeiq.idgvswnsvtlqkwrkafgvipq 1299
                   +v + +  kk+ p++ q++   +t+   k  e+g   r +l+dls +veag  + ++g +g+gk+tll  +l l +t g+ + +  +  n  tl+++++   v+ q
  MMETSP1137-20121227|2584_1  151 SIVKQSSFSKKTTPADFQFKNCTFTVmvkKKGEKGkvpRKLLDDLSGTVEAGSVLAIMGPSGAGKTTLLN-MLMLEDTGGDPRgVVALGGNEFTLDTYKRHACVVQQ 256 
                  45666667777777777777666665222444555344679***************************97.567999999854377888899999999998888877 PP

  == domain 2    score: 10.2 bits;  conditional E-value: 0.00029
   TIGR01271 548 tlsggqrarislaravykdadlylldspfsyldvvtekeifes 590
                  lsggq+ r+sla a+ k   + +ld p s ld  +  +i+  
  MMETSP1137-20121227|2584_1 314 GLSGGQKRRLSLAIALSKRPHVVFLDEPTSGLDAAAAANIMFY 356
                 49*******************************9999988644 PP

>> TIGR00954  3a01203: peroxysomal long chain fatty acyl transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.5   0.0    0.0019      0.12     467     499 ..     190     222 ..     185     225 .. 0.91
   2 !   13.2   0.0   7.4e-05    0.0049     583     642 ..     314     377 ..     267     387 .. 0.84

  Alignments for each domain:
  == domain 1    score: 8.5 bits;  conditional E-value: 0.0019
   TIGR00954 467 vlieeLsfevksGnhlLiiGPnGcGKsslfRil 499
                 +l+++Ls  v+ G+ l i+GP G GK  l  +l
  MMETSP1137-20121227|2584_1 190 KLLDDLSGTVEAGSVLAIMGPSGAGKTTLLNML 222
                 7899***********************998765 PP

  == domain 2    score: 13.2 bits;  conditional E-value: 7.4e-05
   TIGR00954 583 vLsgGekqRiamARlfyHkPkfavLDEcts....AvsvdvEdklyelakevgitllsvshrksL 642
                  LsgG+k R+++A  +  +P+ + LDE ts    A + ++  +l e ak   i++l   h++s 
  MMETSP1137-20121227|2584_1 314 GLSGGQKRRLSLAIALSKRPHVVFLDEPTSgldaAAAANIMFYLKEVAKAESIAILCTIHQPST 377
                 59***************************94444556667777778899999999999998875 PP

>> TIGR00957  MRP_assoc_pro: multi drug resistance-associated protein (MRP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.0   4.5e-07   2.9e-05     653     800 ..     191     354 ..     144     466 .. 0.71

  Alignments for each domain:
  == domain 1    score: 19.5 bits;  conditional E-value: 4.5e-07
   TIGR00957 653 tlngltlsipegalvavvgqvgcgkssllsallaemd..kvegkvalkgsv....ayvpqqawiq.ndsl......renilfgkaleekyykavle..acalladleilpsgdrteigekgv.nlsggqkqrvslaravysdadiyllddplsavdahvakhif 800
                  l+ l+ ++  g+++a++g+ g gk++ll  l+ e       g val g      +y    + +q  d+l      r+ i +  ++ ++ + ++ +      l     l s  +t+ g+     lsggqk+r+sla a+     + +ld+p s +da  a  i+
  MMETSP1137-20121227|2584_1 191 LLDDLSGTVEAGSVLAIMGPSGAGKTTLLNMLMLEDTggDPRGVVALGGNEftldTYKRHACVVQqTDTLwwplspRDHIGYAVRMYQPTFTKAEQrdLVEKLIKKTGLESCKNTKAGNVFFkGLSGGQKRRLSLAIALSKRPHVVFLDEPTSGLDAAAAANIM 354
                 46788889999*******************99988651246789999986422223433333333134433333338888888887777766543311333445556678888888888665249********************************9998875 PP

>> TIGR00630  uvra: excinuclease ABC subunit A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.0     0.051       3.3     623     654 ..     192     223 ..     172     228 .. 0.86
   2 !   12.8   0.0   8.1e-05    0.0053     828     879 ..     314     362 ..     289     373 .. 0.83

  Alignments for each domain:
  == domain 1    score: 3.5 bits;  conditional E-value: 0.051
   TIGR00630 623 lkdidvsiplglltvitGvsgsGkstLindiL 654
                 l d++ ++  g + +i G+sg+Gk tL+n ++
  MMETSP1137-20121227|2584_1 192 LDDLSGTVEAGSVLAIMGPSGAGKTTLLNMLM 223
                 77888899999*****************9765 PP

  == domain 2    score: 12.8 bits;  conditional E-value: 8.1e-05
   TIGR00630 828 tLsGGeaqrvkLakeLskrstgktlyilDePttGLhfdDikkLlevlqrlvd 879
                  LsGG  +r+ La  Lskr     +  lDePt GL  +  ++++  l+++++
  MMETSP1137-20121227|2584_1 314 GLSGGQKRRLSLAIALSKRP---HVVFLDEPTSGLDAAAAANIMFYLKEVAK 362
                 69***************996...47789*******99999988888877665 PP

>> TIGR00929  VirB4_CagE: type IV secretion/conjugal transfer ATPase, VirB4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.1   1.6e-05     0.001     441     460 ..     206     225 ..     198     237 .. 0.88
   2 ?   -3.5   0.0         7   4.6e+02     630     673 ..     328     370 ..     327     371 .. 0.84

  Alignments for each domain:
  == domain 1    score: 15.2 bits;  conditional E-value: 1.6e-05
   TIGR00929 441 lIfGptgsGKTvllnfllaq 460
                 +I+Gp+g+GKT+lln+l+ +
  MMETSP1137-20121227|2584_1 206 AIMGPSGAGKTTLLNMLMLE 225
                 69***************976 PP

  == domain 2    score: -3.5 bits;  conditional E-value: 7
   TIGR00929 630 aldgrrfliiiDEawkllgdpvfeakikeilktlRKaNgivvla 673
                 al +r+ ++++DE  + l+  + +a+i  +lk + Ka  i +l 
  MMETSP1137-20121227|2584_1 328 ALSKRPHVVFLDEPTSGLDA-AAAANIMFYLKEVAKAESIAILC 370
                 57899********9999965.67889999999999999998875 PP

>> TIGR02322  phosphon_PhnN: phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.1   0.00026     0.017       1      21 [.     202     222 ..     202     235 .. 0.85

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 0.00026
   TIGR02322   1 grlilvvGpsGaGKDtlldla 21 
                 g +++++GpsGaGK tll+++
  MMETSP1137-20121227|2584_1 202 GSVLAIMGPSGAGKTTLLNML 222
                 56789*************986 PP

>> TIGR01194  cyc_pep_trnsptr: cyclic peptide transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.0   0.00084     0.055     361     503 ..     196     348 ..     159     392 .. 0.73

  Alignments for each domain:
  == domain 1    score: 9.8 bits;  conditional E-value: 0.00084
   TIGR01194 361 dlriasGelvyivGenGcGkstliklllGlyi..pqeGellldGeavsdesrddyr...dlfsavf.....adyylfd.dlvqpdekkqasldqattylsrleledkvkvedlnystttdlstGqrkrlalvnayleerp.vllldewaadqdpa 503
                   +++ G ++ i+G  G Gk+tl+ +l+         G + l G+  + ++   +    +   +++      d+  +  ++ qp   k    d  ++ +++ +le   + + +n      ls Gq++rl+l  a l +rp v+ lde ++  d a
  MMETSP1137-20121227|2584_1 196 SGTVEAGSVLAIMGPSGAGKTTLLNMLMLEDTggDPRGVVALGGNEFTLDTYKRHAcvvQQTDTLWwplspRDHIGYAvRMYQPTFTKAEQRDLVEKLIKKTGLESCKNTKAGNVF-FKGLSGGQKRRLSLAIA-LSKRPhVVFLDEPTSGLDAA 348
                 55789999999***********9998875443114568999999999999866554111223333312212244333236778888888888888899999999998888888876.789***********998.56666377789988766654 PP

>> TIGR03819  heli_sec_ATPase: helicase/secretion neighborhood ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   0.00039     0.025     159     200 ..     183     224 ..     170     256 .. 0.77

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 0.00039
   TIGR03819 159 aagaiapevaelleaivaarlallvsGgtGsGkttLLsalLa 200
                 ++g +++++ + l+  v+a   l + G +G+GkttLL+ l+ 
  MMETSP1137-20121227|2584_1 183 EKGKVPRKLLDDLSGTVEAGSVLAIMGPSGAGKTTLLNMLML 224
                 5678888888889999999999***************98753 PP

>> TIGR02237  recomb_radB: DNA repair and recombination protein RadB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   0.00062      0.04       5      30 ..     195     220 ..     192     230 .. 0.86

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 0.00062
   TIGR02237   5 lgGgvergiitqiyGpggsGKtnial 30 
                 l G ve+g ++ i Gp g+GKt++  
  MMETSP1137-20121227|2584_1 195 LSGTVEAGSVLAIMGPSGAGKTTLLN 220
                 68********************9854 PP

>> TIGR03263  guanyl_kin: guanylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.1   0.00072     0.047       3      24 ..     204     225 ..     202     229 .. 0.85

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 0.00072
   TIGR03263   3 livisgpsGvGKstlvkkllee 24 
                 ++ i gpsG+GK+tl+++l+ e
  MMETSP1137-20121227|2584_1 204 VLAIMGPSGAGKTTLLNMLMLE 225
                 67899************99865 PP

>> TIGR00231  small_GTP: small GTP-binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.1    0.0009     0.059       5      25 ..     204     224 ..     200     229 .. 0.87

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 0.0009
   TIGR00231   5 kivivGhvdvGKstLlnsllk 25 
                  ++i+G +++GK+tLln l  
  MMETSP1137-20121227|2584_1 204 VLAIMGPSGAGKTTLLNMLML 224
                 579**************9875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (782 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       281  (0.0685032); expected 82.0 (0.02)
Passed bias filter:                      233  (0.0568016); expected 82.0 (0.02)
Passed Vit filter:                       128  (0.0312043); expected 4.1 (0.001)
Passed Fwd filter:                        63  (0.0153584); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              63  [number of targets reported over threshold]
# CPU time: 1.91u 0.20s 00:00:02.11 Elapsed: 00:00:01.25
# Mc/sec: 825.72
//
Query:       MMETSP1137-20121227|2585_1  [L=352]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (352 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       112  (0.0273038); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.13s 00:00:00.40 Elapsed: 00:00:00.41
# Mc/sec: 1133.17
//
Query:       MMETSP1137-20121227|2587_1  [L=286]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      1e-06   27.1   0.1    3.9e-06   25.2   0.1    2.0  1  TIGR00401 msrA: peptide-methionine (S)-S-oxide reductase


Domain annotation for each model (and alignments):
>> TIGR00401  msrA: peptide-methionine (S)-S-oxide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.2   0.1   9.6e-10   3.9e-06       3     143 ..      84     251 ..      82     261 .. 0.62

  Alignments for each domain:
  == domain 1    score: 25.2 bits;  conditional E-value: 9.6e-10
   TIGR00401   3 itfalGCfWgveklfrkidgv........ektkvGylngktenPt....yeevCs....gdtghaevvkveydpkvvsleeLldvffevidPttanrqgnDkGtqyrsgiya....lsdede...kaaeaskerlqe......sakykkkivteiekaenfyeaeeyhqq 143
                  +f++GCfW v++ f + +          + +++Gy++g++   +    y++  +    g  ghaevv+v+   ++v+   +   ff+ +      +  +D+G +yrs++      +s +     +aa++s  rl e      ++  ++ +     +  +fy ae yhq 
  MMETSP1137-20121227|2587_1  84 LYFGAGCFWHVQHEFVLHEAAvlgrrgxeVTAVSGYAGGTKLGDSgrvcYHNPQGiadyGRLGHAEVVQVKVPASKVG--SFSSKFFSXFGERGYRHDPQDRGGEYRSVLGLpggtKSAHYAtvvAAAKESPMRLVEgrgdeeDTLADRTVLVMDSDKFPFYPAELYHQF 251
                 68*************95543212222222345679**98776655444455432222337899*********999986..56788999999999999999********98641111222222000233334445544544332222223333344455689999999995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (286 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        70  (0.0170648); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.24u 0.14s 00:00:00.38 Elapsed: 00:00:00.38
# Mc/sec: 993.39
//
Query:       MMETSP1137-20121227|2588_1  [L=286]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (286 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        61  (0.0148708); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.13s 00:00:00.35 Elapsed: 00:00:00.42
# Mc/sec: 898.78
//
Query:       MMETSP1137-20121227|2589_1  [L=845]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (845 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       243  (0.0592394); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.54u 0.17s 00:00:00.71 Elapsed: 00:00:00.65
# Mc/sec: 1715.86
//
Query:       MMETSP1137-20121227|2590_1  [L=150]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (150 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        37  (0.00901999); expected 82.0 (0.02)
Passed bias filter:                       16  (0.00390054); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.17s 00:00:00.33 Elapsed: 00:00:00.27
# Mc/sec: 733.27
//
Query:       MMETSP1137-20121227|2591_1  [L=80]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (80 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        50  (0.0121892); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.15s 00:00:00.28 Elapsed: 00:00:00.32
# Mc/sec: 329.97
//
Query:       MMETSP1137-20121227|2592_1  [L=156]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (156 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        61  (0.0148708); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.15s 00:00:00.31 Elapsed: 00:00:00.30
# Mc/sec: 686.34
//
Query:       MMETSP1137-20121227|2593_1  [L=82]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.016   13.2   1.1      0.021   12.8   0.8    1.3  1  TIGR01803 CM-like: chorismate mutase related enzymes


Domain annotation for each model (and alignments):
>> TIGR01803  CM-like: chorismate mutase related enzymes
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.8   5.2e-06     0.021      28      61 ..      25      58 ..       3      64 .. 0.73

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 5.2e-06
   TIGR01803 28 raaefKrslevkidaPeRvAevkenaaRyAaelG 61
                r +e    + v  ++ eRvA v e +aR A+e G
  MMETSP1137-20121227|2593_1 25 RHSERDERKAVGDEVGERVARVGEHRARVAEEAG 58
                5556555667778889****************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (82 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       138  (0.0336421); expected 82.0 (0.02)
Passed bias filter:                      107  (0.0260848); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.13u 0.15s 00:00:00.28 Elapsed: 00:00:00.28
# Mc/sec: 386.54
//
Query:       MMETSP1137-20121227|2594_1  [L=137]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (137 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        73  (0.0177962); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.15s 00:00:00.31 Elapsed: 00:00:00.33
# Mc/sec: 547.95
//
Query:       MMETSP1137-20121227|2595_1  [L=354]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.018   12.6   0.0      0.027   12.0   0.0    1.1  1  TIGR00153 TIGR00153: TIGR00153 family protein


Domain annotation for each model (and alignments):
>> TIGR00153  TIGR00153: TIGR00153 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   6.5e-06     0.027      38      72 ..     237     271 ..     208     277 .. 0.87

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 6.5e-06
   TIGR00153  38 ksgneekveelrkeiaelEkeaDeikreirlklek 72 
                  ++n e+ve lrk ++elE e+ ++++ + l+l +
  MMETSP1137-20121227|2595_1 237 AEKNAESVESLRKTVSELEDEGESLRETLALELAS 271
                 57899*************************99975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (354 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        58  (0.0141394); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.26u 0.13s 00:00:00.39 Elapsed: 00:00:00.39
# Mc/sec: 1198.05
//
Query:       MMETSP1137-20121227|2596_1  [L=179]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (179 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        75  (0.0182838); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.13s 00:00:00.31 Elapsed: 00:00:00.31
# Mc/sec: 762.13
//
Query:       MMETSP1137-20121227|2597_1  [L=1644]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
          0 1392.2   0.0          0 1391.8   0.0    1.1  1  TIGR01369 CPSaseII_lrg: carbamoyl-phosphate synthase, large subunit
   9.8e-129  427.2   0.0   1.8e-128  426.3   0.0    1.5  1  TIGR01368 CPSaseIIsmall: carbamoyl-phosphate synthase, small subunit
    1.7e-15   53.4   1.1    3.2e-07   26.0   0.0    2.4  3  TIGR01235 pyruv_carbox: pyruvate carboxylase
    1.6e-12   44.8   0.7    6.7e-07   26.3   0.0    2.3  2  TIGR01142 purT: phosphoribosylglycinamide formyltransferase 2
    1.7e-12   45.3   0.0      8e-12   43.2   0.0    2.1  2  TIGR00566 trpG_papA: glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase
    3.2e-12   43.3   0.0    5.4e-12   42.6   0.0    1.2  1  TIGR01823 PabB-fungal: aminodeoxychorismate synthase
    1.3e-11   41.8   0.2    2.7e-05   21.0   0.0    2.2  2  TIGR00514 accC: acetyl-CoA carboxylase, biotin carboxylase subunit
    3.8e-11   40.3   0.0    1.8e-06   25.0   0.0    2.2  2  TIGR01205 D_ala_D_alaTIGR: D-alanine--D-alanine ligase
    3.6e-10   37.4   0.0    1.1e-09   35.8   0.0    1.8  1  TIGR00888 guaA_Nterm: GMP synthase (glutamine-hydrolyzing), N-terminal domain
    2.6e-09   33.2   0.2    5.1e-06   22.3   0.0    2.1  2  TIGR02712 urea_carbox: urea carboxylase
    1.3e-08   31.1   0.0    2.3e-08   30.3   0.0    1.3  1  TIGR01815 TrpE-clade3: anthranilate synthase
    2.9e-06   24.1   0.1      7e-06   22.8   0.0    1.6  2  TIGR03909 pyrrolys_PylC: pyrrolysine biosynthesis protein PylC
    7.1e-05   18.8   0.0      0.054    9.2   0.0    2.1  2  TIGR02068 cya_phycin_syn: cyanophycin synthetase
    0.00095   16.2   0.0      0.048   10.6   0.0    2.3  2  TIGR02144 LysX_arch: lysine biosynthesis enzyme LysX
     0.0022   14.7   0.0     0.0044   13.7   0.0    1.4  1  TIGR00877 purD: phosphoribosylamine--glycine ligase
      0.007   12.8   0.1      0.084    9.3   0.0    2.1  2  TIGR00337 PyrG: CTP synthase
  ------ inclusion threshold ------
      0.019   12.6   0.1       0.75    7.4   0.0    3.0  3  TIGR01855 IMP_synth_hisH: imidazole glycerol phosphate synthase, glutamine amidotransferase subunit
      0.036   11.2   0.0       0.31    8.2   0.0    2.2  2  TIGR00768 rimK_fam: alpha-L-glutamate ligases, RimK family


Domain annotation for each model (and alignments):
>> TIGR01369  CPSaseII_lrg: carbamoyl-phosphate synthase, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ! 1391.8   0.0         0         0       3    1051 ..     459    1499 ..     457    1500 .. 0.97

  Alignments for each domain:
  == domain 1    score: 1391.8 bits;  conditional E-value: 0
   TIGR01369    3 redikkvlviGsGpivigqAaEFDYsGsqalkalkeegievvLvnsniAtvmtdeeladkvYiePltveavekiiekErpDailltlGGqtaLnlaveleekGvLekygvkllGtkveaikkaedRekFkealkeineeva.kseivesveealeaaeeigyPvivRaaftlgGtGsgiaeneeelkelvekalkaspikqvlvekslagwkEiEyEvvRDskdnciivcniEnlDplGvHtGdsivvaPsqtLtdkeyqllRdaslkiirelgvegecnvqfaldPeskryvviEvnpRvsRssALAskAtGyPiAkvaaklavGysLdelkndvtketvAsfEPslDYvvvkiPrwdldkfekvdrklgtqmksvGEvmaigrtfeealqkalrsleekllglklkek.....eaesdeeleealkkpndrRlfaiaealrrgvsveevyeltkidrffleklkklvelekeleeeklkelkkellkkakklGfsdeqiaklvkvseaevrklrkelgivpvvkrvDtvaaEfeaktpYlYstyeee.....kddvevtekkkvlvlGsGpiRigqgvEFDycavhavlalreagyktilinynPEtvstDydiadrLyFeeltvedvldiiekekvegvivqlgGqtalnlakeleeagvkilGtsaesidraEdRekFsklldelgikqpkgkeatsveeakeiakeigyPvlvRpsyvlgGrameiveneeeleryleeavevskekPvlidkyledavEvdvDavadgeevliagileHiEeaGvHsGDstlvlppqklseevkkkikeivkkiakelkvkGllniqfvvkdeevyviEvnvRasRtvPfvskalgvplvklavkvllgkkleelekgvkkekksklvavkaavfsfsklagvdvvlgpemkstGEvmgigrdleeallkallaskakikkkgsvllsvkdkdkeellelakklaekglkvyategtakvleeagikaevvlkvseea.ekilellkeeeielvinltskkkk..aaekgykirreaveykvplvteletaeallea 1051
                  ++ ++kvl++GsG+++igqA+EFDYsGsqa+kalke   +++Lvn+niAtv+t+  +ad+vY++P+++ +ve+ii kErpD+ill++GGqtaLn+++ l++kGvL+ky+v++lGt+v ai+ +edR+ F ++l+ein e      +  ++eea+eaa++igyPvi+Raaf+lgG  sg+a++e   +el+ekal+ s  +qvlve+s++gwkEiEyEvvRD++dnci+vcn+En+DplG+HtGdsivvaPsqtL++ ey +lR++++k+ r+lg++gecn+q+al+                RssALAskAtGyP+A+vaakla+G +L  ++n+vt++t+A+fEPslDY+vvk+Prwd +kf+kv+  lg+ mksvGEvmaigr+f+ea+qka+r+   +++g++ +++     + +++e++ e+l +p+drR+fa+a a+ rg sv++vyeltki+ +fl+kl+ + ++ ++l+e + + ++++ll+  k++Gfsd+qi+ +++  e++vr+lr ++givpvvk++Dt+aaEf+a+t+YlY ty++       ++ve+++    lvlG+G++Rig++vEFD+cav+++++lr  g+++i++nynPEtvstDyd++ +LyFee+++e+vldi+++e+ +g+iv++gGq+++nla  l+++gv+ilGts+e++draEdR+kFs++ld++g++qp+++e+++ve ak++++++gyP+l+Rpsyvl+G+am++v ++++l+r+l  a +vs+++Pv+i+k++e a+E++vDava+++++l ++i eH+E+aGvHsGD+tl+lp+qkl  e+++++k+i+++iakel+++G++niq+++kd++v+viE+nvRasRt+Pfvsk+l+v++++la+kv++g++++ ++    +  + ++v++ka++fsf++l g+d+vlg+em+stGEv+++g+d+++a+l++++++++ki+k++++l+ +  + k e++e a++l ++gl +y tegt ++++++g  +++++k  +++ +++ + + e++i+lvin++++k++  + ++gy irr+av+++v l+t++++a++l+e+
  MMETSP1137-20121227|2597_1  459 EQPMQKVLLLGSGGLSIGQAGEFDYSGSQAIKALKEMRCRTILVNPNIATVQTSAGMADRVYFLPVNADIVEQIIAKERPDGILLQFGGQTALNCGIALQKKGVLDKYNVRVLGTPVAAIEATEDRDIFMQKLREINXEDRgWLPTXATIEEAVEAAAKIGYPVIMRAAFALGG--SGFAHDEVSCRELAEKALACS--SQVLVERSMKGWKEIEYEVVRDAADNCITVCNMENFDPLGIHTGDSIVVAPSQTLSNAEYMKLRSVAIKVARHLGIVGECNIQYALN---------------XRSSALASKATGYPLAYVAAKLAMGEHLPHIRNSVTRTTTACFEPSLDYCVVKFPRWDSNKFSKVSAGLGSAMKSVGEVMAIGRNFQEAMQKAIRMATPGVVGFQPPKEdsivdVFKTKEAIDEELANPSDRRIFALACAFARGDSVQSVYELTKINPWFLSKLQLIQKIRSKLHEYTPTSISTDLLRLSKQQGFSDQQISMALQCAESDVRALRLSRGIVPVVKQIDTLAAEFPAATNYLYMTYNGSesdghAHEVEEKDMPGTLVLGCGAYRIGSSVEFDWCAVSCIRTLRAIGHRAIMVNYNPETVSTDYDECSTLYFEEISHERVLDIYQHENATGCIVSVGGQVPNNLALPLSASGVTILGTSPENVDRAEDRNKFSSILDRIGVDQPEWAELSTVELAKDFCRRVGYPCLIRPSYVLSGAAMKVVFSDADLQRFLIVACQVSPDHPVVISKFVEGAKEIEVDAVARDGQILNYAIAEHVENAGVHSGDATLILPAQKLFVETVRRVKKISRQIAKELRISGPFNIQLLAKDNDVKVIEANVRASRTFPFVSKTLKVDFIELATKVMVGAHVQPAS---ISLLDVDYVGIKAPMFSFTRLVGADPVLGVEMASTGEVASFGEDKYDAILTSMISAGFKIPKRSVMLCLGPLAAKMEFMESARELLAMGLDLYCTEGTFDFYTDKGLPVKLLHKPLSKTqPNAEDFIGEGKIDLVINIRDSKASeeSITNGYLIRRKAVDFSVCLLTDIKLATMLIES 1499
                  56789***********************************************************************************************************************************9876515567899************************7..67*******************..**************************************************************************************9...............79*****************************************************************************************************9877651111135677888999*************************************************************************************************************************9844544566677777899*************************************************************************************************************************************************************************************************************************************************************************************************************************955...4778999*********************************************************************************************************998766549999*************988765544889************************99986 PP

>> TIGR01368  CPSaseIIsmall: carbamoyl-phosphate synthase, small subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  426.3   0.0    8e-131  1.8e-128       3     359 ..      87     444 ..      85     446 .. 0.95

  Alignments for each domain:
  == domain 1    score: 426.3 bits;  conditional E-value: 8e-131
   TIGR01368   3 lvledGtvfegksfgaekevvGevvFnTsmtGYqEiltDpsYkgqivvltyplignygvneeda.........eskkikvkglvvkelskevsnyrakesLeeflkeegivaiegvDTRalvkklRekgsmkavisteksekeelvekakespkvkevnlvkevstkeayeleqk....akkegkklrvvvidlGvKenilreLvkrgvevtvvpadtsaeeikklnpdgillsnGPGdPaaveeaietvkkllea.kiPifGIclGhqllalalgaktyklkfGhrGaNhpvkdlktgrveitsqNHgyavdeeslkeeelevthvnlnDgtveglehkelpvfsvQyHPeaspGphdteylFdefveli 359
                 lvl+dG+ + g+ fga+k+  GevvFnT+m+GY+E+ltDpsY+gq++vltypl+gnygv+ e+          es++i+++gl+v+e+s ++ +++ ++sL+++l+++gi+a++gvDTR     +Re+g+++++i+   +++   v   +++p++  +nlv++vs+k ++ + ++     + +gk++r++++d+G+K+ni+r ++++gve+ vvp+d++++  k+ + dg+++snGPGdP+++ ++i+ +k++le+  +PifGIclG+qllala+g ktyk+k+G+rGaN+p++d++t r++it+qNHgyavd  sl+++ +e  +vn nDgt+eg+ hk+ p+fsvQ+HPea +Gp+dt++lF+ f++++
  MMETSP1137-20121227|2597_1  87 LVLADGSRWVGTPFGATKSISGEVVFNTAMVGYPESLTDPSYRGQLLVLTYPLVGNYGVPGEKKddlglsmffESESIHISGLLVSEYSFDACHWNLMQSLSSWLQQHGIPALYGVDTRD----IREHGAVLGKIVMPGVDA-ASVP--QVDPNK--INLVAQVSIKAPKLYVSHaparLSLSGKRMRIIAVDCGMKANIIRYFMSKGVELLVVPWDFDFS--KEEY-DGLFISNGPGDPTMCAPTIKFLKAALENrAVPIFGICLGNQLLALAAGCKTYKMKYGNRGANQPCIDTRTTRCYITAQNHGYAVDATSLPAG-WEQFFVNANDGTNEGIIHKTRPFFSVQFHPEACAGPTDTDFLFEMFLHRV 444
                 9***********************************************************999999****************************************************96....8************99655.3333..456665..7************9998445447889999**********************************9..6666.*************************999789*********************************************************9877.**********************************************9876 PP

>> TIGR01235  pyruv_carbox: pyruvate carboxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0       0.9   2.1e+02     273     347 ..     508     581 ..     477     592 .. 0.50
   2 !   26.0   0.0   1.4e-09   3.2e-07     138     278 ..     605     739 ..     599     745 .. 0.81
   3 !   25.6   0.0   1.9e-09   4.3e-07      96     330 ..    1098    1326 ..    1088    1363 .. 0.80

  Alignments for each domain:
  == domain 1    score: -3.1 bits;  conditional E-value: 0.9
   TIGR01235 273 tveflvdedtkfyfievnpriqvehtvt.eeitGidi.vkaqikvaeGaslpskklglpeqediktkGyaiqcrvtt 347
                 tv+      ++ yf+ vn+ i ve  ++ e   Gi +    q  +  G +l+  k g+ ++ ++++ G  + +  +t
  MMETSP1137-20121227|2597_1 508 TVQTSAGMADRVYFLPVNADI-VEQIIAkERPDGILLqFGGQTALNCGIALQ--KKGVLDKYNVRVLGTPVAAIEAT 581
                 333333333455555555555.343333144445544123455555555555..55555555555555555555555 PP

  == domain 2    score: 26.0 bits;  conditional E-value: 1.4e-09
   TIGR01235 138 vetleevldfakaiGyPvilkaayGGGGrGmrvvrseeevadaferakseakaafGndevyveklierpkhievqllgdkaGnvvhlferd..csvqrrhqkvvevaPakslsrevrdklaeaavklakevnyinaGtveflv 278
                   t+ee+++ a++iGyPvi++aa+  GG G      ++ev       +   ka     +v ve+ ++  k ie  ++ d a n + + + +    +       + vaP+++ls++   kl + a+k+a++ +  +   +++ +
  MMETSP1137-20121227|2597_1 605 XATIEEAVEAAAKIGYPVIMRAAFALGGSGFA----HDEVSC----RELAEKALACSSQVLVERSMKGWKEIEYEVVRDAADNCITVCNMEnfDPLGIHTGDSIVVAPSQTLSNAEYMKLRSVAIKVARHLGIVGECNIQYAL 739
                 6799**************************84....455532....2222344446789************************9877654411456677788899**************************999888887765 PP

  == domain 3    score: 25.6 bits;  conditional E-value: 1.9e-09
   TIGR01235   96 ekaGivfiGPkaevldqlGdkvaarelaikagvPvvPgtdgpvetleevldfakaiGyPvilkaayGGGGrGmrvvrseeevadaferakseakaafGndevyveklierpkhievqllgdkaGnvvh..lferdcsvqrrhqkvvevaPakslsrevrdklaeaavklakevnyinaGtveflvdedtkfyfievnpriqvehtvteeitGidivkaqikvaeGaslpskklglpe 330 
                    +G++ +G ++e +d+  d+ +      ++gv   P   +   t+e ++df+++ GyP +++ +y   G  m+vv s+++++  +  a         +  v + k++e +k iev  ++  +G ++   + e              + Pa++l  e   ++ + + ++ake    +   ++ l ++ ++   ie n r         +   +d ++   kv+ Ga ++   ++l +
  MMETSP1137-20121227|2597_1 1098 SASGVTILGTSPENVDRAEDRNKFSSILDRIGVDQ-P-EWAELSTVELAKDFCRRVGYPCLIRPSYVLSGAAMKVVFSDADLQRFLIVA----CQVSPDHPVVISKFVEGAKEIEVDAVAR-DGQILNyaIAEHVENAGVHSGDATLILPAQKLFVETVRRVKKISRQIAKELRISGPFNIQLLAKD-NDVKVIEANVRASRTFPFVSKTLKVDFIELATKVMVGAHVQPASISLLD 1326
                  56799999999999999999999888888888875.3.3456789**********************************9987666555....55667899****************9984.465554113444444444455666789******99999*************99999999877655.58999******99999999999999999999999999988877766665 PP

>> TIGR01142  purT: phosphoribosylglycinamide formyltransferase 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.1   2.6e-06   0.00059      49     250 ..     524     731 ..     464     743 .. 0.69
   2 !   26.3   0.0   2.9e-09   6.7e-07     109     297 ..    1125    1314 ..    1081    1327 .. 0.79

  Alignments for each domain:
  == domain 1    score: 16.6 bits;  conditional E-value: 2.6e-06
   TIGR01142  49 lDadalravierekPdfivpeie.aiatdaLlelekeg......yevvPna.ratkltmnre....glrrlaaeelg.lptakyefadsleeleeavekiGfPcvvkpvmsssGkGqsvvkgpediekaWeeakegargsaerviveefidfdveitlltvravdg.vvefc.....aPiGhrqedgdykesWqPqelsekaleeakeiakrvvdaLGGlG 250
                 ++ad ++++i +e+Pd i+ +     a++  ++l+k+g      ++v+ +   a++ t +r+    +lr++  e+ g lpt       ++ee  ea++kiG+P+++++  +  G G +     +++ ++ +e +e+a + +++v+ve  ++   ei   +vr + +  ++ c     +P+G +   gd       q+ls++   + +++a +v   LG  G
  MMETSP1137-20121227|2597_1 524 VNADIVEQIIAKERPDGILLQFGgQTALNCGIALQKKGvldkynVRVLGTPvAAIEATEDRDifmqKLREINXEDRGwLPT-----XATIEEAVEAAAKIGYPVIMRAAFALGGSGFA----HDEV-SC-RELAEKALACSSQVLVERSMKGWKEIEYEVVRDAADnCITVCnmenfDPLGIH--TGDSIVVAPSQTLSNAEYMKLRSVAIKVARHLGIVG 731
                 4689999*********99977642234444444444444444338888765156789999983322455555555442444.....5799*******************999998853....3444.34.44557788889999999998877777777777654445555522222799965..5666777777899*****************999776 PP

  == domain 2    score: 26.3 bits;  conditional E-value: 2.9e-09
   TIGR01142  109 aeelglptakyefadsleeleeavekiGfPcvvkpvmsssGkGqsvvkgpediekaWeeakegargsaerviveefidfdveitlltvravdgvvefcaPiGhrqe....dgdykesWqPqelsekaleeakeiakrvvdaLGGlGlfGvelfvkgdevifsevsprPhdtglvtlisqelsefelhvrailG 297 
                   +++g+   ++   +++e  ++ ++++G+Pc+++p    sG   +vv +++d+++    a +   + ++ v++ +f++   ei + +v + ++++++ a   h+++     gd +     q+l  ++++++k+i++++ ++L   G f ++l+ k+++v + e  +r   t      + ++   el  + ++G
  MMETSP1137-20121227|2597_1 1125 LDRIGVDQPEWAELSTVELAKDFCRRVGYPCLIRPSYVLSGAAMKVVFSDADLQRFLIVACQV--SPDHPVVISKFVEGAKEIEVDAVARDGQILNY-AIAEHVENagvhSGDATLILPAQKLFVETVRRVKKISRQIAKELRISGPFNIQLLAKDNDVKVIEANVRASRTFPFVSKTLKVDFIELATKVMVG 1314
                  467788888888888999999**********************************99999875..45678999**********99999887774444.334444431111345555566689*************************************9999999988775444444455555666666666 PP

>> TIGR00566  trpG_papA: glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.2   0.0   3.5e-14     8e-12      14     184 ..     276     434 ..     267     443 .. 0.71
   2 ?   -1.9   0.0       2.2   5.1e+02      35      90 ..     682     742 ..     669     751 .. 0.72

  Alignments for each domain:
  == domain 1    score: 43.2 bits;  conditional E-value: 3.5e-14
   TIGR00566  14 nlvqlleelgaevvvkrndsltlqeieallpllsivisPGPctPdeaaissleliehl..aGklPilGvClGhqalaqafGadvvraekvkhGkvseiehngaavfaglfn...PdalkatryhslvveaetldtllevtaleeeeieimairhrdlpleGvqfhPesilselGke 184
                 n+++++  +g e++v   d +  +  e+      + is GP+ P   a   ++ ++ +  +  +Pi+G+ClG q la+a G +  ++   k+G        +++  ++  +    +++ +++ h   v+a +l++  e   ++ ++    +i h+  p++ vqfhPe++   + + 
  MMETSP1137-20121227|2597_1 276 NIIRYFMSKGVELLVVPWDFDFSK--EEYD---GLFISNGPGDPTMCAPT-IKFLKAAleNRAVPIFGICLGNQLLALAAGCKTYKM---KYG--------NRGANQPCIDtrtTRCYITAQNHGYAVDATSLPAGWEQFFVNANDGTNEGIIHKTRPFFSVQFHPEACAGPTDTD 434
                 777777777777766665544332..2222...3679*********9998.5555543224457*****************876655...333........3333333333221356888999***********99887777777777789*****************98765544 PP

  == domain 2    score: -1.9 bits;  conditional E-value: 2.2
   TIGR00566  35 tlqeieallplls.....ivisPGPctPdeaaissleliehlaGklPilGvClGhqalaqa 90 
                 t+ ++e++ pl       iv++P  +  +   ++  ++  ++a +l i+G C  + al   
  MMETSP1137-20121227|2597_1 682 TVCNMENFDPLGIhtgdsIVVAPSQTLSNAEYMKLRSVAIKVARHLGIVGECNIQYALNXR 742
                 5555555555433334459999999999998899888989999999999999888887655 PP

>> TIGR01823  PabB-fungal: aminodeoxychorismate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.6   0.0   2.4e-14   5.4e-12      53     202 ..     301     442 ..     286     451 .. 0.80

  Alignments for each domain:
  == domain 1    score: 42.6 bits;  conditional E-value: 2.4e-14
   TIGR01823  53 lfdaivvGPGPGdPnv.akdvgilsevfelanldevPvlGiCLGfqslcLaqGadierlplplhGqvsevktsdaaifegvssvkstryhsLyankesidsllalilledeedqilmsvkakkkPifGvqyhPesvksekesvkllknflk 202
                 ++d + +  GPGdP   a  +  l+   e+     vP++GiCLG q l+La G +  ++++   G  +    + ++  + +++    + h   +   s      ++ ++ +++     + +k +P+f vq+hPe+++   ++  l++ fl+
  MMETSP1137-20121227|2597_1 301 EYDGLFISNGPGDPTMcAPTIKFLKAALENR---AVPIFGICLGNQLLALAAGCKTYKMKYGNRGANQPCIDT-RTTRCYITA----QNHGYAVDATSLPAGWEQFFVNANDG-TNEGIIHKTRPFFSVQFHPEACAGPTDTDFLFEMFLH 442
                 68899999******99999*******99999...8******************************87764333.334455544....44555666666655555666554444.3457889****************99998889988875 PP

>> TIGR00514  accC: acetyl-CoA carboxylase, biotin carboxylase subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.0   6.3e-07   0.00014     139     280 ..     606     741 ..     563     746 .. 0.80
   2 !   21.0   0.0   1.2e-07   2.7e-05      96     321 ..    1098    1317 ..    1089    1382 .. 0.85

  Alignments for each domain:
  == domain 1    score: 18.6 bits;  conditional E-value: 6.3e-07
   TIGR00514 139 edveeaveiakeiGypviikataGGGGrGlrvvreedelvkslkaakaeakaaf.nndgvylekfienprhveiqvladkyGnvvylgerdc..siqrrkqklleeapspaltselrkkiGeaavkaaksigytgaGtveflldk 280
                  ++eeave a +iGypvi++a+   GG G+     +de+       ++ a+ a+   ++v +e+ ++  + +e +v+ d   n + +++ +    +   +   +  aps +l++    k+ ++a+k+a+++g +g   +++ l+ 
  MMETSP1137-20121227|2597_1 606 ATIEEAVEAAAKIGYPVIMRAAFALGGSGFA----HDEVSC-----RELAEKALaCSSQVLVERSMKGWKEIEYEVVRDAADNCITVCNMENfdPLGIHTGDSIVVAPSQTLSNAEYMKLRSVAIKVARHLGIVGECNIQYALNX 741
                 5789************************974....444432.....22222222035789***********************999876553225677777788889*****9999999*************9999999888775 PP

  == domain 2    score: 21.0 bits;  conditional E-value: 1.2e-07
   TIGR00514   96 eesgltfiGpsaeairlmGdkvsaketmkkagvpvvpGsdGlvedveeaveiakeiGypviikataGGGGrGlrvvreedelvkslkaakaeakaafnndgvylekfienprhveiqvla.dkyGnvvylger..dcsiqrrkqklleeapspaltselrkkiGeaavkaaksigytgaGtveflldkegefyflemntriqvehpvtemvtgvdlikeqirvakGekl 321 
                    sg+t +G s+e +    d++    ++ ++gv     ++  +++ve a++  +++Gyp +i+ +    G  ++vv ++++l++ l +a + +     ++ v + kf+e  + +e+  +a d +     ++e   +  +      l+   p+  l  e  +++ + + ++ak++   g   +++l + +++   +e n r     p   +   vd+i+   +v  G ++
  MMETSP1137-20121227|2597_1 1098 SASGVTILGTSPENVDRAEDRNKFSSILDRIGVDQPEWAE--LSTVELAKDFCRRVGYPCLIRPSYVLSGAAMKVVFSDADLQRFLIVACQVS----PDHPVVISKFVEGAKEIEVDAVArDGQILNYAIAEHveNAGVHSGDATLI--LPAQKLFVETVRRVKKISRQIAKELRISGPFNIQLLAK-DNDVKVIEANVRASRTFPFVSKTLKVDFIELATKVMVGAHV 1317
                  5689999*************************98744444..56789999**********************************998876543....467899*************9988344433344666522455666666665..7999999999999************9999999987766.88899************************999999999876 PP

>> TIGR01205  D_ala_D_alaTIGR: D-alanine--D-alanine ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.1   0.0   3.3e-05    0.0075      84     265 ..     561     732 ..     557     745 .. 0.77
   2 !   25.0   0.0     8e-09   1.8e-06     104     285 ..    1115    1287 ..    1096    1316 .. 0.81

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 3.3e-05
   TIGR01205  84 glLellgipyvGsgvlaSalsmdKlltKlllkalglpvadyavlerkeekseeaekekleklglpvivKpa.reGSSvGvskvkseeeleealeeafeydeevlveeaikg.relevsvlekeealpiieiveekekedFydYeaKYldgsaelvipae.lseeeeekikelalkaykalgcrgl 265
                 g+L+ ++++ +G  v+a  ++ d+ ++ + l++ + +   +        ++ e+ +e+++k+g+pvi ++a  +G S     +++e   +e +e+a+  +++vlve+ +kg +e+e  v++ + a ++i +++ ++    +d     +  ++ +v p + ls++e+ k++++a+k+ ++lg  g 
  MMETSP1137-20121227|2597_1 561 GVLDKYNVRVLGTPVAAIEATEDRDIFMQKLREINXEDRGWLPT----XATIEEAVEAAAKIGYPVIMRAAfALGGS---GFAHDEVSCRELAEKALACSSQVLVERSMKGwKEIEYEVVR-DAADNCITVCNMEN----FDPLGIHTG-DSIVVAPSQtLSNAEYMKLRSVAIKVARHLGIVGE 732
                 88999999999999999999999999977777777776666654....4444445678999********98345544...356777788888999*************88768********.88899999999999....444444444.4555555556****************999988765 PP

  == domain 2    score: 25.0 bits;  conditional E-value: 8e-09
   TIGR01205  104 smdKlltKlllkalglpvadyavlerkeekseeaekekleklglpvivKpareGSSvGvskvkseeeleealeeafey..deevlveeaikg.relevsvlekeealpiieiveekekedFydYeaKYldgsaelvipae.lseeeeekikelalkaykalgcrglaRvDfflekegeiylnEiNt 285 
                  + d+  + ++l++ g++++++a l+  e + ++       ++g+p++++p+   S   +++v s+ +l+++l  a ++  d+ v++ ++++g +e+ev ++ ++ ++   +i e+ e       +a   +g+a l++pa+ l  e  +++k+++ ++ k+l  +g   +  + +++  + + E N 
  MMETSP1137-20121227|2597_1 1115 AEDRNKFSSILDRIGVDQPEWAELSTVELA-KD----FCRRVGYPCLIRPSYVLSGAAMKVVFSDADLQRFLIVACQVspDHPVVISKFVEGaKEIEVDAVARDGQILNYAIAEHVE-------NAGVHSGDATLILPAQkLFVETVRRVKKISRQIAKELRISGPFNIQLLAKDN-DVKVIEANV 1287
                  56777778899*************544443.33....56679****************************9988877633788******88648****9999999999999999999.......88899999999999999****************************9999966.899999884 PP

>> TIGR00888  guaA_Nterm: GMP synthase (glutamine-hydrolyzing), N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.8   0.0   4.8e-12   1.1e-09      14     184 ..     277     444 ..     266     448 .. 0.71

  Alignments for each domain:
  == domain 1    score: 35.8 bits;  conditional E-value: 4.8e-12
   TIGR00888  14 iaRrlrelgvyselvpatttleeikevepkgiilsGgPes..vkaenaekvdekifelgvPvlGiCyGmqllakalGgeveraekreygkaelevldedelfkglekelkvWmshgDkvkelPegfkvl.aksencpvaalkkeekklyGvqfhPevthtekGke.llenfvkdv 184
                 i R     gv+  +vp++    +  + e  g+ +s gP      a   + +++++ +  vP++GiC+G qlla a G ++ + +  + g  +  ++ ++     +  + + ++    + ++lP g++    +++    + + +++++++ vqfhPe     + ++ l+e f++ v
  MMETSP1137-20121227|2597_1 277 IIRYFMSKGVELLVVPWDF---DFSKEEYDGLFISNGPGDptMCAPTIKFLKAALENRAVPIFGICLGNQLLALAAGCKTYKMKYGNRGANQPCIDTRT-TRCYITAQNHGYAV---DATSLPAGWEQFfVNANDGTNEGIIHKTRPFFSVQFHPEACAGPTDTDfLFEMFLHRV 444
                 6677777777777888887...556677899****999751134455566677788999********************99999888888777666544.33444444443333...34678888876415566688999****************9876655541556676665 PP

>> TIGR02712  urea_carbox: urea carboxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.9   0.0   0.00024     0.054     138     221 ..     607     682 ..     602     740 .. 0.71
   2 !   22.3   0.0   2.3e-08   5.1e-06      13     326 ..    1025    1323 ..    1022    1366 .. 0.81

  Alignments for each domain:
  == domain 1    score: 8.9 bits;  conditional E-value: 0.00024
   TIGR02712 138 sleealeaaeeigyPvmlkstaGGGGiGlqkvdsaeeleeafesvkrlgesff.sdagvflekfvekarhvevqilGdgkGkvva 221
                 ++eea+eaa++igyPv+++++   GG G+ +     e+     s ++l+e+ +  ++ v +e+ ++  + +e  ++ d + + ++
  MMETSP1137-20121227|2597_1 607 TIEEAVEAAAKIGYPVIMRAAFALGGSGFAHD----EV-----SCRELAEKALaCSSQVLVERSMKGWKEIEYEVVRDAADNCIT 682
                 789*****************999999887542....22.....233444433313566777777777777777777777666665 PP

  == domain 2    score: 22.3 bits;  conditional E-value: 2.3e-08
   TIGR02712   13 avriirtlkklgirsvavysdadkasqhvkdadeavalgeataaesylkidkileiakktgaeaiiPGyGflsenaafaeaceaagivfvGPtpeqlrklGlkhtarelaeaagvPllpGtgllesleealeaaeeigyPvmlkstaGGGGiGlqkvdsaeeleeafesvkrlgesffsdagvflekfvekarhvevq.ilGdgkGkvvalger..dCslqrrnqkvveetPaPnlpeevrekllkaaeklaeavnyrsaGtvefiydekrdefyflevntrlqvehpvteavtgldlvewmvrlaageapdldelk 326 
                  av  irtl+ +g r++ v  +++  s+   d de+ +l  ++     ++ +++l+i ++ +a+  i   G    n ++a  ++a g++ +G +pe++++   + +   +  + gv   + ++ l+++e a++ ++++gyP +++ +    G  ++ v s ++l++ f  v     +   d  v + kfve a+ +ev  +  dg+    a+ e   +  +   +  ++   Pa +l  e+ ++++k ++++a+++    +G  +    +k +++  +e n r     p   +   +d++e+  ++  g++ + ++++
  MMETSP1137-20121227|2597_1 1025 AVSCIRTLRAIGHRAIMVNYNPETVST---DYDECSTLYFEE-----ISHERVLDIYQHENATGCIVSVGGQVPN-NLALPLSASGVTILGTSPENVDRAEDRNKFSSILDRIGVDQPEWAE-LSTVELAKDFCRRVGYPCLIRPSYVLSGAAMKVVFSDADLQR-FLIVA---CQVSPDHPVVISKFVEGAKEIEVDaVARDGQILNYAIAEHveNAGVHSGDATLI--LPAQKLFVETVRRVKKISRQIAKELRI--SGPFNIQLLAKDNDVKVIEANVRASRTFPFVSKTLKVDFIELATKVMVGAHVQPASIS 1323
                  778899999999999999999988885...567776666555.....45799****9999998766666554443.4677899********************************9877666.699*************************************86.66664...4556799****************8356799887777777611555555555555..7********************998865..55555556688899999***********************999888877777666655 PP

>> TIGR01815  TrpE-clade3: anthranilate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.3   0.0     1e-10   2.3e-08     515     688 ..     260     426 ..     236     435 .. 0.77

  Alignments for each domain:
  == domain 1    score: 30.3 bits;  conditional E-value: 1e-10
   TIGR01815 515 eGkrillvdhedsfvhtlanylrqtGasvttlrhsvaeelldeerpdlvvlspGpGrpkdfdvketik...aa.lardlpvfGvclGlqglveafGGeldvlaepvhGkasrirvlepdvlfaglpeeltvGryhslfarsdrlpkelk.vtaesedgvimaiehrklpvaavqfhpes 688
                 +Gkr+ ++  +  +   +  y+ + G  +  +   +    +++e  d + +s GpG p+    + tik   aa  +r +p+fG+clG q l+ a G +  ++++   G +     + +       ++     + h    ++  lp+       +++dg+  +i h++ p  +vqfhpe+
  MMETSP1137-20121227|2597_1 260 SGKRMRIIAVDCGMKANIIRYFMSKGVELLVVPWDF---DFSKEEYDGLFISNGPGDPTMC--APTIKflkAAlENRAVPIFGICLGNQLLALAAGCKTYKMKYGNRGANQPCIDTRT-------TRCYITAQNHGYAVDATSLPAGWEqFFVNANDGTNEGIIHKTRPFFSVQFHPEA 426
                 666666666666666677777777776666665554...37888999999********864..444432214415799**************************99998765554444.......56666778999999******98752567889**********************7 PP

>> TIGR03909  pyrrolys_PylC: pyrrolysine biosynthesis protein PylC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0       2.4   5.5e+02     201     231 ..     700     731 ..     640     739 .. 0.80
   2 !   22.8   0.0   3.1e-08     7e-06     124     278 ..    1152    1313 ..    1141    1322 .. 0.75

  Alignments for each domain:
  == domain 1    score: -3.2 bits;  conditional E-value: 2.4
   TIGR03909 201 rvlaPae.ldlekkdefrelalklaaelnlkG 231
                  v+aP + l+     ++r++a+k+a++l + G
  MMETSP1137-20121227|2597_1 700 IVVAPSQtLSNAEYMKLRSVAIKVARHLGIVG 731
                 5788876356677789999999*999998877 PP

  == domain 2    score: 22.8 bits;  conditional E-value: 3.1e-08
   TIGR03909  124 efPvlvkPscesssegvriindrkeleell....klesednlvveeyleGes.vslevi...GdkgnyavvkiteleidatydCkrvlaPa.eldlekkdefrelalklaaelnlkGimdvevilheeklkvleidarlPsqtPivvykssGinlvelllkaft 278 
                  ++P l++Ps   s   ++++ ++ +l+++l    +      +v+  ++eG   + ++ +   G+  nya+ +  e     + d   ++ Pa +l +e  ++ ++++ ++a+el + G  +++ + +++++kv+e + r  s+t   v k+  ++++el +k  +
  MMETSP1137-20121227|2597_1 1152 GYPCLIRPSYVLSGAAMKVVFSDADLQRFLivacQVSPDHPVVISKFVEGAKeIEVDAVardGQILNYAIAEHVENAGVHSGDA-TLILPAqKLFVETVRRVKKISRQIAKELRISGPFNIQLLAKDNDVKVIEANVRA-SRTFPFVSKTLKVDFIELATKVMV 1313
                  68**************************9622212233456899******6414444441223333566555555544555688.5666661578999***************************************96.566556777777888887776655 PP

>> TIGR02068  cya_phycin_syn: cyanophycin synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.2   0.0   0.00024     0.054     236     297 ..     607     665 ..     602     677 .. 0.83
   2 !    7.3   0.0   0.00095      0.22     207     296 ..    1111    1201 ..    1102    1214 .. 0.81

  Alignments for each domain:
  == domain 1    score: 9.2 bits;  conditional E-value: 0.00024
   TIGR02068 236 saeeaeeaaeelGyPvvikPldGnhGrGvtin.iesreeiesayeaakeesseviverfikGr 297
                 ++eea+eaa ++GyPv+++      G G + + ++ re +e+a       ss+v+ver +kG 
  MMETSP1137-20121227|2597_1 607 TIEEAVEAAAKIGYPVIMRAAFALGGSGFAHDeVSCRELAEKAL----ACSSQVLVERSMKGW 665
                 5799************************9876377777777665....57999******9994 PP

  == domain 2    score: 7.3 bits;  conditional E-value: 0.00095
   TIGR02068  207 aveiasDkeltkklLkaaGvPvPeGtvvqsaeeaeeaaeelGyPvvikPldGnhGrGvtiniesreeiesayeaakees..seviverfikG 296 
                   v+ a+D++   ++L+  Gv  Pe   ++++e a++    +GyP  i+P     G  +++  +   +++    +a ++s  + v++ +f++G
  MMETSP1137-20121227|2597_1 1111 NVDRAEDRNKFSSILDRIGVDQPEWAELSTVELAKDFCRRVGYPCLIRPSYVLSGAAMKVVFSDA-DLQRFLIVACQVSpdHPVVISKFVEG 1201
                  578899*******************************************9877777777655444.35555566666665556777777777 PP

>> TIGR02144  LysX_arch: lysine biosynthesis enzyme LysX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.0     0.043       9.9     110     130 ..     607     627 ..     568     635 .. 0.84
   2 !   10.6   0.0   0.00021     0.048      67     131 ..    1096    1161 ..    1070    1195 .. 0.84

  Alignments for each domain:
  == domain 1    score: 3.0 bits;  conditional E-value: 0.043
   TIGR02144 110 dkeaalklaeelGyPvvlKPv 130
                   e+a+++a ++GyPv+++ +
  MMETSP1137-20121227|2597_1 607 TIEEAVEAAAKIGYPVIMRAA 627
                 55899************9865 PP

  == domain 2    score: 10.6 bits;  conditional E-value: 0.00021
   TIGR02144   67 lleelGvkvin.sseviiacgdKvfttlkLakagvPtPktivafdkeaalklaeelGyPvvlKPve 131 
                   l ++Gv+++  s e + +++d+   +++L + gv +P+++     e a+   +++GyP +++P  
  MMETSP1137-20121227|2597_1 1096 PLSASGVTILGtSPENVDRAEDRNKFSSILDRIGVDQPEWAELSTVELAKDFCRRVGYPCLIRPSY 1161
                  56677777775156789999***999**************************************75 PP

>> TIGR00877  purD: phosphoribosylamine--glycine ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   0.0   1.9e-05    0.0044      47     293 ..    1060    1290 ..    1037    1320 .. 0.73

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 1.9e-05
   TIGR00877   47 eievtdleevvefakkkkidlavigpEapLvlGlvdaleeaGikvfGpkkeAa.klEasKafakdllkkagiptaeyevftepeeakeyieekgapaivvkadgLaaGKgvivvkdeeealkaveeilekkkfgeagekvviEefleG.eEvsllalvdgktvvplplaqdhkrvlegDkgpnTGGmGayspapvvteevekkiaeeiveptvealkkegtpykGvLyaglmltkegepkvlefnvRfg 293 
                    e+  +e+v ++ ++++    +++      + l+  l + G++++G + e   + E   +f  ++l+++g+ ++e+++++ +e ak++ +++g p ++++++ + +G   +vv +  + ++ +  + +        ++vvi +f+eG +E+ + a+    ++++ ++a        +  g+  G    + pa+ +  e+ +++ ++i ++++++l+    p++     + +l k+++ kv+e nvR  
  MMETSP1137-20121227|2597_1 1060 YFEEISHERVLDIYQHENATGCIVSVGGQVPNNLALPLSASGVTILGTSPENVdRAEDRNKF-SSILDRIGVDQPEWAELSTVELAKDFCRRVGYP-CLIRPSYVLSGAAMKVVFSDADLQRFLIVACQV----SPDHPVVISKFVEGaKEIEVDAVARDGQILNYAIAEHV-----ENAGVHSGDATLILPAQKLFVETVRRV-KKISRQIAKELRIS-GPFN----IQ-LLAKDNDVKVIEANVRAS 1290
                  55555566666666666666555555555666677779999******998876255666666.589*****************************9.99***************8887776665444444....5789**********569****99999999999998654.....346788888888888887777776655.56888888888877.3444....33.345666688999888864 PP

>> TIGR00337  PyrG: CTP synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.3   0.0   0.00037     0.084     342     389 ..     299     348 ..     224     379 .. 0.76
   2 ?    1.1   0.1      0.11        25     496     524 ..     413     441 ..     396     443 .. 0.80

  Alignments for each domain:
  == domain 1    score: 9.3 bits;  conditional E-value: 0.00037
   TIGR00337 342 leevdgilvPGGfGerGv.eGkilaikyarenk.iPflGiclGlqvavie 389
                 +ee dg+++  G G+  +    i+  k a en+ +P++GiclG q+ ++ 
  MMETSP1137-20121227|2597_1 299 KEEYDGLFISNGPGDPTMcAPTIKFLKAALENRaVPIFGICLGNQLLALA 348
                 4569999999999997752679999*****99659**********97765 PP

  == domain 2    score: 1.1 bits;  conditional E-value: 0.11
   TIGR00337 496 dhpffvatqfhPefksrveepsklflglv 524
                 + + f+++qfhPe  + +++++ lf  ++
  MMETSP1137-20121227|2597_1 413 KTRPFFSVQFHPEACAGPTDTDFLFEMFL 441
                 3444669*************999998886 PP

>> TIGR01855  IMP_synth_hisH: imidazole glycerol phosphate synthase, glutamine amidotransferase subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0       2.8   6.4e+02      13      48 ..     186     225 ..     180     244 .. 0.67
   2 ?    7.4   0.0    0.0033      0.75      62      85 ..     323     346 ..     297     356 .. 0.85
   3 ?    0.9   0.0      0.33        74     171     183 ..     414     426 ..     381     433 .. 0.76

  Alignments for each domain:
  == domain 1    score: -2.2 bits;  conditional E-value: 2.8
   TIGR01855  13 svkkalervgaesevvkdskelek....adklvlPGVGaf 48 
                 s+++ l+++g  +    d++++++      k+v+PGV a+
  MMETSP1137-20121227|2597_1 186 SLSSWLQQHGIPALYGVDTRDIREhgavLGKIVMPGVDAA 225
                 566677777777766666666554111146899****876 PP

  == domain 2    score: 7.4 bits;  conditional E-value: 0.0033
   TIGR01855  62 llaekvvkkkkpvlgiClGmQllf 85 
                  l++ ++++  p+ giClG Qll+
  MMETSP1137-20121227|2597_1 323 FLKAALENRAVPIFGICLGNQLLA 346
                 45667788899***********97 PP

  == domain 3    score: 0.9 bits;  conditional E-value: 0.33
   TIGR01855 171 kdnivgvQFHPEk 183
                 +  +++vQFHPE 
  MMETSP1137-20121227|2597_1 414 TRPFFSVQFHPEA 426
                 456899*****96 PP

>> TIGR00768  rimK_fam: alpha-L-glutamate ligases, RimK family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.0      0.39        89      80     137 ..     576     634 ..     548     651 .. 0.75
   2 ?    8.2   0.0    0.0014      0.31      68     175 ..    1097    1204 ..    1078    1307 .. 0.80

  Alignments for each domain:
  == domain 1    score: 0.1 bits;  conditional E-value: 0.39
   TIGR00768  80 qaienagdKllssalLakaglplpktl.vagseeeakklieeigfPvvlKpvfGswGkl 137
                  aie+ +d+ + +++L + +     +l + +  eea +++ +ig+Pv+++ +f   G +
  MMETSP1137-20121227|2597_1 576 AAIEATEDRDIFMQKLREINXEDRGWLpTXATIEEAVEAAAKIGYPVIMRAAFALGGSG 634
                 4677777777777877777776666662344789999999*********9998777765 PP

  == domain 2    score: 8.2 bits;  conditional E-value: 0.0014
   TIGR00768   68 leslGveviN.ssqaienagdKllssalLakaglplpktlvagseeeakklieeigfPvvlKpvfGswGklvvlvedkqeaekllealeqlkekykvflvQeyikksgg 175 
                  l + Gv ++  s++ +++a+d+ + s++L + g+++p+++ +   e ak++  ++g+P  ++p     G ++  v   + ++  l    q+ +++ v ++ ++++ +++
  MMETSP1137-20121227|2597_1 1097 LSASGVTILGtSPENVDRAEDRNKFSSILDRIGVDQPEWAELSTVELAKDFCRRVGYPCLIRPSYVLSGAAMKVVFSDADLQRFLIVACQVSPDHPV-VISKFVEGAKE 1204
                  5566777664268999*********************************************999888888877777777777777666666665554.45577776665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1644 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       151  (0.0368113); expected 82.0 (0.02)
Passed bias filter:                      132  (0.0321794); expected 82.0 (0.02)
Passed Vit filter:                        31  (0.00755729); expected 4.1 (0.001)
Passed Fwd filter:                        18  (0.0043881); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              18  [number of targets reported over threshold]
# CPU time: 1.43u 0.22s 00:00:01.65 Elapsed: 00:00:01.61
# Mc/sec: 1347.76
//
Query:       MMETSP1137-20121227|2598_1  [L=54]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        27  (0.00658216); expected 82.0 (0.02)
Passed bias filter:                       27  (0.00658216); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.17s 00:00:00.25 Elapsed: 00:00:00.40
# Mc/sec: 178.19
//
Query:       MMETSP1137-20121227|2600_1  [L=571]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (571 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        84  (0.0204778); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.21s 00:00:00.52 Elapsed: 00:00:00.99
# Mc/sec: 761.27
//
Query:       MMETSP1137-20121227|2601_1  [L=575]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0021   15.5   1.4       0.71    7.3   0.1    2.3  2  TIGR00678 holB: DNA polymerase III, delta' subunit


Domain annotation for each model (and alignments):
>> TIGR00678  holB: DNA polymerase III, delta' subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.3   0.1   0.00017      0.71       3      41 ..     289     327 ..     287     346 .. 0.86
   2 !    7.2   0.1   0.00018      0.74       3      41 ..     512     550 ..     510     568 .. 0.87

  Alignments for each domain:
  == domain 1    score: 7.3 bits;  conditional E-value: 0.00017
   TIGR00678   3 alkralekgrlahAlLfaGpeGvGkealaealakallCe 41 
                 a+ +a++++r ++AlL ++ +G  + +la++ a++llC+
  MMETSP1137-20121227|2601_1 289 AFGKAASTRRASPALLAQSAAGPDEFTLAMHKAWTLLCR 327
                 566788999*****************************8 PP

  == domain 2    score: 7.2 bits;  conditional E-value: 0.00018
   TIGR00678   3 alkralekgrlahAlLfaGpeGvGkealaealakallCe 41 
                 a+ +a++++r ++AlL ++ +G  + +la++ a++llC+
  MMETSP1137-20121227|2601_1 512 AFGKAASTRRASPALLAQSAAGPDEFTLAMHKAWTLLCR 550
                 566788999*****************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (575 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        72  (0.0175524); expected 82.0 (0.02)
Passed bias filter:                       36  (0.00877621); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.16s 00:00:00.52 Elapsed: 00:00:01.76
# Mc/sec: 431.21
//
Query:       MMETSP1137-20121227|2602_1  [L=1757]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.097    8.9   0.2        3.9    3.7   0.1    2.8  3  TIGR01135 glmS: glutamine-fructose-6-phosphate transaminase (isomerizing)


Domain annotation for each model (and alignments):
>> TIGR01135  glmS: glutamine-fructose-6-phosphate transaminase (isomerizing)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.0    0.0042        17      60      88 ..     293     321 ..     276     326 .. 0.84
   2 ?    3.7   0.1   0.00094       3.9     338     383 ..     824     869 ..     811     951 .. 0.74
   3 ?   -3.3   0.0      0.12   4.8e+02     531     588 ..    1640    1697 ..    1639    1700 .. 0.92

  Alignments for each domain:
  == domain 1    score: 1.5 bits;  conditional E-value: 0.0042
   TIGR01135  60 kelegkvgigHtRWaTHGkpteeNaHPHv 88 
                 ++++ ++  gHtR+aT    +    HPH+
  MMETSP1137-20121227|2602_1 293 TNTSPQLFQGHTRFATSSICNLSGCHPHQ 321
                 555666777*******************6 PP

  == domain 2    score: 3.7 bits;  conditional E-value: 0.00094
   TIGR01135 338 kktlviaisQSGETaDtlealrlakekgakvlaivNvkeSalarea 383
                 ++t+v+ is SG T  tl+  +l ++  ++++ ++   + ++ar +
  MMETSP1137-20121227|2602_1 824 TNTVVLGISHSGGTFGTLAGCNLLRSYTHSIFVVTSEWDTQVARAV 869
                 5789999***************999999888888887777777765 PP

  == domain 3    score: -3.3 bits;  conditional E-value: 0.12
   TIGR01135  531 nveEvkaRgaevivlasedaeaeeeeadevikvpeveellaplvsvvplqllayhial 588 
                  n+ Ev  R+  v  l ++  ++ ++  + ++   +  +l++++  +v l ll y +++
  MMETSP1137-20121227|2602_1 1640 NAGEVMKRQQLVQLLCESRFDSLQRLVSFFVMFHALGKLVQDFWPTVSLGLLHYDMSR 1697
                  7789999***9******99999999999999*9*********************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1757 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        94  (0.0229157); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.97u 0.14s 00:00:01.10 Elapsed: 00:00:00.97
# Mc/sec: 2390.77
//
Query:       MMETSP1137-20121227|2603_1  [L=81]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.3e-12   45.3   0.0    1.4e-12   45.1   0.0    1.0  1  TIGR00382 clpX: ATP-dependent Clp protease, ATP-binding subunit ClpX
    3.3e-07   27.4   0.0    3.6e-07   27.3   0.0    1.0  1  TIGR00390 hslU: ATP-dependent protease HslVU, ATPase subunit
  ------ inclusion threshold ------
       0.01   11.9   0.0       0.01   11.9   0.0    1.1  1  TIGR03345 VI_ClpV1: type VI secretion ATPase, ClpV1 family


Domain annotation for each model (and alignments):
>> TIGR00382  clpX: ATP-dependent Clp protease, ATP-binding subunit ClpX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.1   0.0   1.1e-15   1.4e-12     348     409 ..       5      65 ..       3      71 .. 0.93

  Alignments for each domain:
  == domain 1    score: 45.1 bits;  conditional E-value: 1.1e-15
   TIGR00382 348 velefeeealkaiakkalerktGarglrsiveellldvmfelpsledlekvvitkevvlkqe 409
                 ++l+ ++eal++ia++a + +tGargl +++e+ l d  felps + l++ v+++++v+  +
  MMETSP1137-20121227|2603_1   5 IDLVVTDEALDEIASRAESERTGARGLLTVLEDTLRDFKFELPSTN-LKQLVVDRHTVQAPK 65 
                 79******************************************98.**********98755 PP

>> TIGR00390  hslU: ATP-dependent protease HslVU, ATPase subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.3   0.0   2.6e-10   3.6e-07     360     425 ..       3      63 ..       1      78 [. 0.87

  Alignments for each domain:
  == domain 1    score: 27.3 bits;  conditional E-value: 2.6e-10
   TIGR00390 360 egvelefsdeaikkiaelaynvnekteniGarrlhtvlerlledlsfeaedlslqkvtidadyvek 425
                 +g++l  +dea+++ia  a     ++e  Gar l tvle  l d+ fe + ++l+++ +d++ v+ 
  MMETSP1137-20121227|2603_1   3 YGIDLVVTDEALDEIASRA-----ESERTGARGLLTVLEDTLRDFKFELPSTNLKQLVVDRHTVQA 63 
                 79*************9865.....99***********************************99974 PP

>> TIGR03345  VI_ClpV1: type VI secretion ATPase, ClpV1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   7.5e-06      0.01     791     828 ..       3      40 ..       1      67 [. 0.83

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 7.5e-06
   TIGR03345 791 ykaeleydealveeivarctevesGaRaidaileqtll 828
                 y+++l +++++++ei++r+++  +GaR + ++le+tl 
  MMETSP1137-20121227|2603_1   3 YGIDLVVTDEALDEIASRAESERTGARGLLTVLEDTLR 40 
                 8899******************************9985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (81 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       102  (0.0248659); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.15u 0.14s 00:00:00.29 Elapsed: 00:00:00.30
# Mc/sec: 356.37
//
Query:       MMETSP1137-20121227|2604_1  [L=266]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.1e-43  144.7   4.3    1.4e-23   81.4   0.0    2.1  2  TIGR00086 smpB: SsrA-binding protein


Domain annotation for each model (and alignments):
>> TIGR00086  smpB: SsrA-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.4   0.0   3.4e-27   1.4e-23       3      76 ..      32     106 ..      30     107 .. 0.95
   2 !   63.1   1.8   1.5e-21     6e-18      81     144 .]     153     216 ..     151     216 .. 0.97

  Alignments for each domain:
  == domain 1    score: 81.4 bits;  conditional E-value: 3.4e-27
   TIGR00086   3 akNkkakfdYeilekleaGivLkGsEvKsiragkvslkdayviikkgevfllnlsia.eykagsllnhderrkrk 76 
                 + N++a+ +Ye+le++eaGi+L G+EvKs ragk++l+d y++ik ge +l n++ia ++ +g+ ++hde+r+++
  MMETSP1137-20121227|2604_1  32 TLNRQARQNYELLEEYEAGISLVGTEVKSCRAGKINLRDGYCQIKDGECWLRNVHIArHQFSGTFFQHDETRDKQ 106
                 67*******************************************************777788999******985 PP

  == domain 2    score: 63.1 bits;  conditional E-value: 1.5e-21
   TIGR00086  81 kkeikklkkkvkekgltlvplklyfkekgkvKveialakgkklhDKResikkrdakrelkralk 144
                 +k+i+kl++ v++kglt+vp+k yf+  +++K++iala+gk   DKR++ik+rd++re+kr++k
  MMETSP1137-20121227|2604_1 153 QKKIRKLDAAVQQKGLTIVPVKAYFNCDNRLKLQIALARGKNVADKRDTIKQRDTDREVKRQMK 216
                 689**********************************************************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (266 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       113  (0.0275475); expected 82.0 (0.02)
Passed bias filter:                      102  (0.0248659); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.23u 0.18s 00:00:00.41 Elapsed: 00:00:00.90
# Mc/sec: 390.10
//
Query:       MMETSP1137-20121227|2605_1  [L=327]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   1.3e-137  457.6   0.8   1.5e-137  457.4   0.6    1.0  1  TIGR00484 EF-G: translation elongation factor G
    1.6e-50  169.8   1.0    2.8e-25   86.4   0.1    2.0  2  TIGR00490 aEF-2: translation elongation factor aEF-2
    1.5e-19   67.5   0.3    4.4e-10   36.2   0.0    2.1  2  TIGR01394 TypA_BipA: GTP-binding protein TypA/BipA
    5.2e-18   62.5   0.0    2.4e-08   30.6   0.0    2.0  2  TIGR01393 lepA: GTP-binding protein LepA
  ------ inclusion threshold ------
      0.023   11.0   0.0      0.079    9.2   0.0    1.8  2  TIGR00503 prfC: peptide chain release factor 3


Domain annotation for each model (and alignments):
>> TIGR00484  EF-G: translation elongation factor G
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  457.4   0.6  1.9e-140  1.5e-137     374     690 ..       2     320 ..       1     321 [. 0.99

  Alignments for each domain:
  == domain 1    score: 457.4 bits;  conditional E-value: 1.9e-140
   TIGR00484 374 aaliGlkdtttGdtlcdekaevilesmefpePvislavePktkadqekmgialgklaeedPtfkvftdeesgqtiiaGmGelhldiivdrlkrefkvevnvGkPqvayretirkkaevegkyakqsGGrGqyGhvvielePlee..gkgyefvneikGGviPreyipavdkGleealesGvlaGyPvvdikvtlfdGsyhdvdsselafklaaslalkeavkkakPvllePimkvevevPeeylGdvlGdlsrrrgliegseeresvkvvkaevPlsemfGyatdlrsatqGraeysmeflkyaevPksvaeeiiekkk 690
                 +al+G kdtttG+tlcd+ ++vile+mefpePvi+++veP +k dqekm++al kla+edP+f+   de+sgqt+i+GmGelhl+ii dr+krefkve n+G Pqvayre+i + +++e++++kqsGG Gq+ ++v+++ePle+  + g+ f +eikGG +P+eyip v kGle  +++G laG+Pv+  k+tl dG yhdvdss +af++a+  a +++ ++a   l+eP+mkvev+vPee +Gdv+Gd+++rrg++    er+++kvv+a+vPls+mf y ++lrs t+Gra+ysme+++y+ vP +v +e++ k k
  MMETSP1137-20121227|2605_1   2 IALVGCKDTTTGETLCDPANPVILEKMEFPEPVIKVSVEPNSKGDQEKMTMALVKLAQEDPSFRFSRDEDSGQTVIEGMGELHLEIICDRMKREFKVECNIGPPQVAYREAISRPCTIEHTHKKQSGGSGQFAKIVVKFEPLEDesASGFVFEQEIKGGTVPKEYIPGVAKGLESVMSNGILAGFPVIGCKATLLDGAYHDVDSSVMAFEIAGRAAARKGLREAGAKLMEPVMKVEVTVPEESMGDVIGDINSRRGMVAELAERGNMKVVRARVPLSNMFQYVSQLRSITKGRASYSMELDNYEVVPPNVEKELLTKYK 320
                 699*******************************************************************************************************************************************998889*********************************************************************************************************************************************************************998876 PP

>> TIGR00490  aEF-2: translation elongation factor aEF-2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.8   0.0     4e-27   3.3e-24     356     498 ..       2     147 ..       1     167 [. 0.83
   2 !   86.4   0.1   3.4e-28   2.8e-25     559     710 ..     169     318 ..     149     323 .. 0.91

  Alignments for each domain:
  == domain 1    score: 82.8 bits;  conditional E-value: 4e-27
   TIGR00490 356 vavvglkeavageticstdkkikafeaikhisepvvtvaieakntkdlpklievlrkvakedptvkveineetgehlisgmgelhleiivkkirekagvevetsepivvyretvtgtspvve..gk...spnkhnrlyivvepleesv 498
                 +a+vg k++++get+c++++ +  +e ++ + epv+ v++e     d  k+   l k+a+edp+ +   +e++g+ +i gmgelhleii+++++++++ve ++++p v yre+++  +++     k      +  ++ ++ eple++ 
  MMETSP1137-20121227|2605_1   2 IALVGCKDTTTGETLCDPANPV-ILEKME-FPEPVIKVSVEPNSKGDQEKMTMALVKLAQEDPSFRFSRDEDSGQTVIEGMGELHLEIICDRMKREFKVECNIGPPQVAYREAISRPCTIEHthKKqsgGSGQFAKIVVKFEPLEDES 147
                 79****************9887.477776.79*********************************************************************************98655433211221113456778888889998754 PP

  == domain 2    score: 86.4 bits;  conditional E-value: 3.4e-28
   TIGR00490 559 lilegfkeamrngpvakekvmgvkvklvdaklhedavhrgpaqvipavrkgifaallqaepvlleplqkvfinvpqdlmgaatreiqnrrgqilemkqegdmvtikakvpvaemfgfagairgategralwstefagfekvprelqeelvke 710
                  + +g+++ m ng +a  +v+g k  l+d   h+  v         a r + ++ l +a   l+ep+ kv ++vp++ mg ++ +i++rrg + e+ + g+m +++a+vp+++mf +  ++r+ t+gra +s+e   +e vp ++ +el+ +
  MMETSP1137-20121227|2605_1 169 GVAKGLESVMSNGILAGFPVIGCKATLLDGAYHD--VDSSVMAFEIAGRAAARKGLREAGAKLMEPVMKVEVTVPEESMGDVIGDINSRRGMVAELAERGNMKVVRARVPLSNMFQYVSQLRSITKGRASYSMELDNYEVVPPNVEKELLTK 318
                 5679***************************997..55555556668899999999999***************************************************************************************999865 PP

>> TIGR01394  TypA_BipA: GTP-binding protein TypA/BipA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.2   0.0   5.4e-13   4.4e-10     270     388 ..       2     112 ..       1     122 [. 0.88
   2 !   29.4   0.1   6.2e-11   5.1e-08     386     475 ..     223     311 ..     217     322 .. 0.90

  Alignments for each domain:
  == domain 1    score: 36.2 bits;  conditional E-value: 5.4e-13
   TIGR01394 270 vavaGledieigetiadaeeaealpllkvdePtlsmtfsvndsPlaGkegkkvtsrkirdrLereletnvalrveeteeadkfevsGrGeLhlsiLietmrre.GfelsvskPkvivkei 388
                 +a++G +d++ get++d+ ++  l+ ++  eP ++++++ n     G ++k +t       L + ++++ ++r +  e++ +  ++G GeLhl i+ + m+re   e +++ P+v ++e 
  MMETSP1137-20121227|2605_1   2 IALVGCKDTTTGETLCDPANPVILEKMEFPEPVIKVSVEPNSK---GDQEK-MTM-----ALVKLAQEDPSFRFSRDEDSGQTVIEGMGELHLEIICDRMKREfKVECNIGPPQVAYREA 112
                 7999**********************************99973...55443.443.....4666778899*********************************55899*********985 PP

  == domain 2    score: 29.4 bits;  conditional E-value: 6.2e-11
   TIGR01394 386 keidgkklePieeltidvpeefvgavieklgkrkgelkdmeskgsGrvrlefkiPsrgliGfrtefltatrGegilnrvfdeyeplkgei 475
                 +e   k +eP+ ++ + vpee++g vi  + +r+g + +++++g+    ++  +P   ++ + +++ + t+G +  +   d+ye +  ++
  MMETSP1137-20121227|2605_1 223 REAGAKLMEPVMKVEVTVPEESMGDVIGDINSRRGMVAELAERGN-MKVVRARVPLSNMFQYVSQLRSITKGRASYSMELDNYEVVPPNV 311
                 56667899************************************9.566899****************************9999766555 PP

>> TIGR01393  lepA: GTP-binding protein LepA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.6   0.0   2.9e-11   2.4e-08     264     373 ..       7     111 ..       2     137 .. 0.84
   2 !   29.9   0.0   4.8e-11   3.9e-08     396     476 ..     227     305 ..     213     311 .. 0.90

  Alignments for each domain:
  == domain 1    score: 30.6 bits;  conditional E-value: 2.9e-11
   TIGR01393 264 vkdvkvGdtitsvkkpakealpGfkkvkpvvfaglyPidsedyeelrdaleklklndasltyekesskalGfGfrcGflGllhleviqerlerefdldliataPsvvykv 373
                  kd+  G+t+ + ++p+   l+  +  +pv+  ++ P ++ d e++  al kl+ +d s+ + ++  +  G     G +G lhle+i +r++ref+++  +  P+v y+ 
  MMETSP1137-20121227|2605_1   7 CKDTTTGETLCDPANPVI--LEKMEFPEPVIKVSVEPNSKGDQEKMTMALVKLAQEDPSFRFSRDEDS--GQTVIEG-MGELHLEIICDRMKREFKVECNIGPPQVAYRE 111
                 578888999988888875..555566789*********************************998765..4444444.7*****************************85 PP

  == domain 2    score: 29.9 bits;  conditional E-value: 4.8e-11
   TIGR01393 396 eeveePyvkatiivpeeylgailelcqekrgvlkkleyldkervelvyelPlaeivldffdklksiskGyasldyelieyr 476
                 +++ eP++k+++ vpee +g ++  ++++rg++ +l   ++ +  ++  +Pl++ ++++  +l+si+kG as+  el +y+
  MMETSP1137-20121227|2605_1 227 AKLMEPVMKVEVTVPEESMGDVIGDINSRRGMVAELAERGNMK-VVRARVPLSN-MFQYVSQLRSITKGRASYSMELDNYE 305
                 6789********************************9999655.5899*****9.589****************9999886 PP

>> TIGR00503  prfC: peptide chain release factor 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   0.0   9.6e-05     0.079     406     467 ..      46     108 ..       9     127 .. 0.79
   2 ?   -0.9   0.0      0.11        89     171     212 ..     189     233 ..     174     264 .. 0.74

  Alignments for each domain:
  == domain 1    score: 9.2 bits;  conditional E-value: 9.6e-05
   TIGR00503 406 kqkqllkGlvelseeG.avqvlrsldendlivaavGvlqfdvvvarlkeeynveavyesvnva 467
                  q ++   lv+l +e  + +  r  d  + ++  +G l ++++  r+k e++ve+ + + +va
  MMETSP1137-20121227|2605_1  46 DQEKMTMALVKLAQEDpSFRFSRDEDSGQTVIEGMGELHLEIICDRMKREFKVECNIGPPQVA 108
                 466777888998666515555666666699************************988776665 PP

  == domain 2    score: -0.9 bits;  conditional E-value: 0.11
   TIGR00503 171 iGtG.klfkGvyhllkdeiylye.sGkgstikavrvvka.lddpe 212
                 iG+   l+ G yh +   +  +e +G+ +++k  r   a l +p 
  MMETSP1137-20121227|2605_1 189 IGCKaTLLDGAYHDVDSSVMAFEiAGRAAARKGLREAGAkLMEPV 233
                 677425678888888888888888888888877765533255554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (327 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        99  (0.0241346); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.36u 0.12s 00:00:00.48 Elapsed: 00:00:00.77
# Mc/sec: 560.53
//
Query:       MMETSP1137-20121227|2606_1  [L=382]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (382 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        49  (0.0119454); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.18s 00:00:00.45 Elapsed: 00:00:00.52
# Mc/sec: 969.61
//
Query:       MMETSP1137-20121227|2607_1  [L=702]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   5.8e-165  548.8   0.0   7.3e-165  548.4   0.0    1.0  1  TIGR01967 DEAH_box_HrpA: ATP-dependent helicase HrpA
   4.8e-109  363.7   0.0   5.9e-109  363.4   0.0    1.0  1  TIGR01970 DEAH_box_HrpB: ATP-dependent helicase HrpB
    0.00036   18.4   0.0    0.00079   17.3   0.0    1.5  1  TIGR03499 FlhF: flagellar biosynthesis protein FlhF
    0.00065   16.6   0.0     0.0011   15.8   0.0    1.3  1  TIGR02788 VirB11: P-type DNA transfer ATPase VirB11
     0.0023   14.7   0.0     0.0036   14.0   0.0    1.2  1  TIGR00959 ffh: signal recognition particle protein
     0.0074   13.3   0.9      0.026   11.5   0.1    2.1  3  TIGR01587 cas3_core: CRISPR-associated helicase Cas3
      0.009   13.1   0.0      0.017   12.3   0.0    1.3  1  TIGR02782 TrbB_P: P-type conjugative transfer ATPase TrbB
     0.0093   13.7   0.0      0.028   12.1   0.0    1.7  1  TIGR00150 HI0065_YjeE: ATPase, YjeE family
  ------ inclusion threshold ------
      0.011   12.8   0.0      0.018   12.1   0.0    1.3  1  TIGR01420 pilT_fam: twitching motility protein


Domain annotation for each model (and alignments):
>> TIGR01967  DEAH_box_HrpA: ATP-dependent helicase HrpA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  548.4   0.0  1.6e-167  7.3e-165      62     700 ..      46     689 ..      36     698 .. 0.91

  Alignments for each domain:
  == domain 1    score: 548.4 bits;  conditional E-value: 1.6e-167
   TIGR01967  62 ypdnlPvsakrediakaiaenqvviiaGetGsGkttqlPkiclelGrGs.rGlightqPrrlaarsvaervaeelgtplGevvGykvrfedqvseetlvklltdGillaelqqdrflerydtiiideaherslnidfllGylkellkrrPdlkiiitsatidverfskhfnnaPiievsGrtyPvevryrPleeeqedeidldqleallaa.vdelveeekGdiliflpGereirdaaealrkr......klrhveilPlyarlsaeeqqrvfqp.........hsgrrivlatnvaetsltvPgiryvidtGtarisrysyrtkvqrlPiepisqasanqrkGrcGrvaeGicirlyseedfnsr.PeftdPeilrtnlasvilqmlalrlGdiaafPfieaPdkrairdGlrlleeldalkedeaeikltpiGrqlaqlPvdPrlarmlleaerlgclqevliiasalsiqdprerPlekkqaadqaharfkdvesdflalvklWryleeqrkalsanalrkklkkeylnylrvreWqdlvrqlkqvvkelglkvneep....adydaihkallsGllsqiGakdekkeysGarnrkfl.ifPgselakksPkwvmaaelvetsklyarlvakiePeWveevaahlikknylePhwekkr 700
                   ++lPv +++++  + +++nq +++ GetGsGkttq+P   ++ G  + r l++ tqPrr+aa sv++rv+ee++ +lGe vGy +rfed  + +t++k +tdG+ll e   d +lery ++i+deaher+l  d l+G++ke+  +rPdlk+i+ sat+d  +f ++f+ aP+++v Gr +Pve+ y P     e+  ++d lea + + v+  + e++Gdil+fl+Ge+ei da  + +++      ++ +v +lPly+ l  e q+++f+p           gr+i+ +tn+aetslt+ gi yv+d+G a+   y  r +v  l + pis+asa qr Gr Gr  +G c rly e+ +++   e t Peilr nl sv+lq+++l++ d+ +f f+++P ++++   l+ll+ l+al++d    +lt++G  +a++P+dP+la+mll + +l+c +e+l +++ l + +p  rP e + aad+a   f+ v+ d l+l+++++  +++++ +s      ++ +++ln   ++    +  ql ++++ +gl++++        y++i k+ll+G++ q+   ++  +y  +++++ + ++P+  + + +P+w +  e+v tsk y r+v+ i+ +W+ e+a+h    +++ P  e+kr
  MMETSP1137-20121227|2607_1  46 SRKKLPVWEQKDEFFEMVKKNQTIVLVGETGSGKTTQIPSFMVDTGITRgRKLVACTQPRRVAAMSVSKRVSEEMDVELGEEVGYTIRFEDMTGTKTILKYMTDGMLLREAMADPLLERYAAVILDEAHERTLATDILFGLIKEVAAQRPDLKLIVMSATLDAGKFQAYFDSAPLMKVPGRLHPVEIFYTP-----EP--ERDYLEAAIRTvVQVHLCEGEGDILVFLTGEQEIEDACRKTKQEidnlgdQVPDVLVLPLYSTLPMERQRQIFDPpppprkpgdPNGRKIIYSTNIAETSLTIDGIVYVVDPGFAKXKVYNPRIRVESLLVSPISKASAHQRAGRAGRTRPGKCFRLYTEKAYKKElMEQTYPEILRSNLGSVVLQLKKLGIEDLVHFDFMDPPAPETLMRALELLNYLGALDDDG---NLTELGAMMAEFPLDPQLAKMLLYSPQLNCSNEILSVVAMLNTPNPFMRPREAQRAADEAKNAFQHVDGDHLTLLNVYHAWKNNQESTS------WCYDNFLNSRSMKSADSVRAQLMRIMNRFGLELKSPDfnskEYYSNIRKCLLAGFFMQVAHLEKTGHYLTVKDNQVVaLHPS-TVLQHKPEWCLYNEFVLTSKNYIRMVTDIKGDWLVELAPHYYDLKNF-PQCEAKR 689
                 5679****************************************99754367******************************************************************************************************************************************9.....33..45666665555156667899***************9987665532222337889*******************97333333332379****************************************************************************8762789*******************************************************9...*********************************************************************************99998876......9******************************999543333266899*************************99887615665.5556679*********************************8766555.5555555 PP

>> TIGR01970  DEAH_box_HrpB: ATP-dependent helicase HrpB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  363.4   0.0  1.3e-111  5.9e-109      10     454 ..      59     516 ..      50     554 .. 0.90

  Alignments for each domain:
  == domain 1    score: 363.4 bits;  conditional E-value: 1.3e-111
   TIGR01970  10 lrdalaakpqvvLeappGaGkstalPLalLdapwligrkiil.LePrrlaaravaerlaselgeevGetvGyrvrlenkvsaktrlevvteGiltrmlqdDPeLegvdllifDefhersldaDlaLalaldvqsalreDLkilimsatLdgerlselldeapvveseGrsfPveirylplredealedrvaraveealaeesgsvLvfLPGqaeirrveeaLaerlda.....sevelcPLyGeleleaqdraikpaaaGr.......rkvvLatniaetsltieGvrvviDsglarvarfdpksGltrLetkrisqasadqraGraGrlepGvclrLwseeq.aerlaaaaepeilqadLaglalelarWGak.psdlrfldaPPaaalaaakeLLqrlgaldaegkltahGkalaeLgvePrlaalllsakseeeaalaaelaalLeerdlerkggad 454
                 + + ++ ++ +vL   +G+Gk+t++P  ++d++ + grk++    Prr+aa +v++r+++e++ e Ge+vGy +r+e  +++kt l  +t+G+l r   +DP Le+ +++i+De her l++D+   l ++v  + r DLk+++msatLd  +++  +d+ap+++  Gr +Pvei y+p  e++ le ++++ v+  l e  g++LvfL G++ei+ + ++ ++++d+     ++v ++PLy  l++e q+++ +p++  r       rk++ +tniaetslti+G+  v+D g+a+   ++p+  +  L +  is+asa+qraGraGr+ pG c+rL++e+  +++l +++ peil+++L +++l+l + G +   ++ f+d P   +l++a eLL+ lgald +g+lt+ G  +ae +++P+la++ll + + +  ++ +++ a+L+ +++  ++  +
  MMETSP1137-20121227|2607_1  59 FFEMVKKNQTIVLVGETGSGKTTQIPSFMVDTGITRGRKLVAcTQPRRVAAMSVSKRVSEEMDVELGEEVGYTIRFEDMTGTKTILKYMTDGMLLREAMADPLLERYAAVILDEAHERTLATDILFGLIKEVAAQ-RPDLKLIVMSATLDAGKFQAYFDSAPLMKVPGRLHPVEIFYTPEPERDYLEAAIRTVVQVHLCEGEGDILVFLTGEQEIEDACRKTKQEIDNlgdqvPDVLVLPLYSTLPMERQRQIFDPPPPPRkpgdpngRKIIYSTNIAETSLTIDGIVYVVDPGFAKXKVYNPRIRVESLLVSPISKASAHQRAGRAGRTRPGKCFRLYTEKAyKKELMEQTYPEILRSNLGSVVLQLKKLGIEdLVHFDFMDPPAPETLMRALELLNYLGALDDDGNLTELGAMMAEFPLDPQLAKMLLYSPQLNCSNEILSVVAMLNTPNP-FMRPRE 516
                 5566788999****************************9986269***************************************************************************************865.*******************************************************************************8765555554442222579*********************98754433344459**********************************************************************98761566889999********************99999*******9**************************************************************99864.333333 PP

>> TIGR03499  FlhF: flagellar biosynthesis protein FlhF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.0   1.7e-06   0.00079     193     215 ..      61      83 ..      27     111 .. 0.83

  Alignments for each domain:
  == domain 1    score: 17.3 bits;  conditional E-value: 1.7e-06
   TIGR03499 193 eilekggviaLvGptGvGKTTTl 215
                 e+ +k ++i+LvG tG+GKTT +
  MMETSP1137-20121227|2607_1  61 EMVKKNQTIVLVGETGSGKTTQI 83 
                 4678889**************76 PP

>> TIGR02788  VirB11: P-type DNA transfer ATPase VirB11
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0   2.5e-06    0.0011     134     165 ..      57      87 ..      35     105 .. 0.83

  Alignments for each domain:
  == domain 1    score: 15.8 bits;  conditional E-value: 2.5e-06
   TIGR02788 134 keFlklaiaakkniiisGgtgsgKTTflkalv 165
                 +eF+++ ++++++i+++G tgsgKTT + + +
  MMETSP1137-20121227|2607_1  57 DEFFEM-VKKNQTIVLVGETGSGKTTQIPSFM 87 
                 567764.8999***************887765 PP

>> TIGR00959  ffh: signal recognition particle protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.0   7.9e-06    0.0036      93     158 ..      61     124 ..      37     137 .. 0.81

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 7.9e-06
   TIGR00959  93 klaekkpavillvGLqGsGKtttaaKlakklkkkekkkvllvalDlyRpaAveqLkvlgeqvgvpv 158
                 +   kk+++i+lvG  GsGKtt +      +   ++ + l++ +  +R+aA+   k ++e+++v++
  MMETSP1137-20121227|2607_1  61 E-MVKKNQTIVLVGETGSGKTTQIPSFMVDTGI-TRGRKLVACTQPRRVAAMSVSKRVSEEMDVEL 124
                 3.4577899***************999987444.4555678888899*************999986 PP

>> TIGR01587  cas3_core: CRISPR-associated helicase Cas3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0      0.45   2.1e+02       3      51 ..      70     118 ..      68     152 .. 0.70
   2 !   11.5   0.1   5.7e-05     0.026     125     170 ..     165     212 ..     136     224 .. 0.78
   3 ?   -3.4   0.0       1.8   8.4e+02     310     323 ..     378     389 ..     368     411 .. 0.64

  Alignments for each domain:
  == domain 1    score: -1.4 bits;  conditional E-value: 0.45
   TIGR01587   3 vieAPtGyGKteaallwalklikkqkadkvifalPtratanamyerlke 51 
                 v++  tG+GKt+   ++  +    + ++ v  + P r+ a  + +r++e
  MMETSP1137-20121227|2607_1  70 VLVGETGSGKTTQIPSFMVDTGITRGRKLVACTQPRRVAAMSVSKRVSE 118
                 77778******98777777755555555566666777766666666665 PP

  == domain 2    score: 11.5 bits;  conditional E-value: 5.7e-05
   TIGR01587 125 nSvliiDEvhayeeytkalllallevlk.dvdvkillmsAtlp.kllk 170
                 ++ +i+DE+h     t  l+ ++ ev++ + d k+++msAtl    ++
  MMETSP1137-20121227|2607_1 165 YAAVILDEAHERTLATDILFGLIKEVAAqRPDLKLIVMSATLDaGKFQ 212
                 689*******988888888888888888899***********764444 PP

  == domain 3    score: -3.4 bits;  conditional E-value: 1.8
   TIGR01587 310 iQRlGRlaRygrki 323
                  QR+GR  R   + 
  MMETSP1137-20121227|2607_1 378 HQRAGRAGR--TRP 389
                 699999999..333 PP

>> TIGR02782  TrbB_P: P-type conjugative transfer ATPase TrbB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.3   0.0   3.7e-05     0.017     124     153 ..      54      83 ..      47      99 .. 0.88

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 3.7e-05
   TIGR02782 124 aqadvlreavaarknilvvGGtgsGkttLa 153
                 +q+d + e+v+ ++ i++vG tgsGktt +
  MMETSP1137-20121227|2607_1  54 EQKDEFFEMVKKNQTIVLVGETGSGKTTQI 83 
                 6899999*********************76 PP

>> TIGR00150  HI0065_YjeE: ATPase, YjeE family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.1   0.0   6.2e-05     0.028      13      50 ..      57      94 ..      45      98 .. 0.88

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 6.2e-05
   TIGR00150 13 kklakaldlatvvlLkGdlGaGKttlvkgllkglGiqg 50
                +++++ +++++ ++L G+ G+GKtt + +++ + Gi++
  MMETSP1137-20121227|2607_1 57 DEFFEMVKKNQTIVLVGETGSGKTTQIPSFMVDTGITR 94
                5789999999****************999999999885 PP

>> TIGR01420  pilT_fam: twitching motility protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   3.9e-05     0.018     114     144 ..      59      89 ..      26     103 .. 0.80

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 3.9e-05
   TIGR01420 114 lkelaekkrGlilvtGptGsGKsttlAs.lid 144
                 + e+++k++ ++lv G+tGsGK+t + s ++d
  MMETSP1137-20121227|2607_1  59 FFEMVKKNQTIVLV-GETGSGKTTQIPSfMVD 89 
                 56788888877765.**********9883455 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (702 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       226  (0.0550951); expected 82.0 (0.02)
Passed bias filter:                      219  (0.0533886); expected 82.0 (0.02)
Passed Vit filter:                        73  (0.0177962); expected 4.1 (0.001)
Passed Fwd filter:                         9  (0.00219405); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.81u 0.19s 00:00:01.00 Elapsed: 00:00:00.84
# Mc/sec: 1103.05
//
Query:       MMETSP1137-20121227|2608_1  [L=103]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (103 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        52  (0.0126767); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.16s 00:00:00.31 Elapsed: 00:00:00.26
# Mc/sec: 522.88
//
Query:       MMETSP1137-20121227|2609_1  [L=445]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      7e-64  213.7   0.5    8.9e-64  213.4   0.4    1.0  1  TIGR02997 Sig70-cyanoRpoD: RNA polymerase sigma factor, cyanobacterial RpoD-like family
    8.2e-55  183.8   0.0    2.5e-54  182.2   0.0    1.6  2  TIGR02393 RpoD_Cterm: RNA polymerase sigma factor RpoD
    8.3e-49  164.4   0.3    1.2e-48  163.8   0.2    1.2  1  TIGR02394 rpoS_proteo: RNA polymerase sigma factor RpoS
    2.1e-30  104.0   0.4    1.7e-28   97.7   0.3    2.1  2  TIGR02980 SigBFG: RNA polymerase sigma-70 factor, sigma-B/F/G subfamily
    1.4e-27   94.2   0.7    2.3e-27   93.5   0.5    1.3  1  TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family
    3.3e-25   87.1   0.3    7.1e-25   86.0   0.2    1.5  1  TIGR02392 rpoH_proteo: alternative sigma factor RpoH
    4.5e-24   83.4   0.0    5.5e-22   76.6   0.0    2.1  2  TIGR02885 spore_sigF: RNA polymerase sigma-F factor
    1.8e-22   78.0   0.5    3.2e-21   73.9   0.3    2.0  2  TIGR02479 FliA_WhiG: RNA polymerase sigma factor, FliA/WhiG family
    1.9e-19   67.9   0.0    6.8e-18   62.9   0.0    2.2  2  TIGR02850 spore_sigG: RNA polymerase sigma-G factor
    3.3e-19   67.1   0.1    3.8e-14   50.5   0.0    2.3  2  TIGR02835 spore_sigmaE: RNA polymerase sigma-E factor
    9.4e-19   65.7   0.2    6.8e-14   49.8   0.0    2.2  2  TIGR02846 spore_sigmaK: RNA polymerase sigma-K factor
    5.2e-17   60.0   0.0    1.2e-16   58.8   0.0    1.5  2  TIGR02941 Sigma_B: RNA polymerase sigma-B factor
    1.5e-05   22.4   0.1    0.00063   17.1   0.1    2.2  2  TIGR02859 spore_sigH: RNA polymerase sigma-H factor


Domain annotation for each model (and alignments):
>> TIGR02997  Sig70-cyanoRpoD: RNA polymerase sigma factor, cyanobacterial RpoD-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  213.4   0.4   2.8e-66   8.9e-64      16     298 .]      67     357 ..      61     357 .. 0.94

  Alignments for each domain:
  == domain 1    score: 213.4 bits;  conditional E-value: 2.8e-66
   TIGR02997  16 ltaeeeielarqvqellaleekkeeleeqlekepskeelakavdl..sekelkkalkqgrrAkeklikanLRLvvsvAkkYqkrglellDLiqeGslGleravekFdptkGykfstyAyWWirqgitraiaeqsrtiRlPiHiteklnklkkvqrelsqklgrepseaelaealeleveqvrellkaarkpvsLdakv.....G.keedtelgdlled.eeeePeeeveeellkedleellae.LkererevlrlrfGledeeeltlaeigeelnlsrervrqiekkalkklr 298
                 l+ ++e +l+  +q+l +    +eel+++l+++p+++e++++v+   +++++++al++ ++A++ li++nLRLv  +AkkY  rg+++ DL+qeG+lGl  a+ek+d     +f+tyA +Wi   i ra+ +  +tiRlP+ +++ ++++k+++ ++ qk+gr p+ +elae  ++++e++r +l+a+r  vsLda+v     G ++  ++l +lled  +++Pee++e   l+ +l++++a+ L++ e +v++l + l+++ ++   ++++ l+ ++ervrqie ++l+klr
  MMETSP1137-20121227|2609_1  67 LNGNQEETLSAAIQTLCKWVVVREELATRLDRKPTSHEWSQEVGFagDVDRFHDALTSMQHARDMLITSNLRLVSYIAKKYSGRGIHMQDLVQEGTLGLITAAEKYDAR--VRFATYASYWIHMRIRRAVGTTRQTIRLPVRMSDSVSQIKRMRYDFLQKKGRFPADHELAELAGFSEEKLRLILQATRDHVSLDAPVsrrslGaSSSASSLRELLEDtGRTNPEEQLEAYDLRLQLRKAIARvLDPYECRVMELLYALDGGGKRLAPDVASSLGYTQERVRQIEVNSLRKLR 357
                 77789999**********************************9973358899*******************************************************97..69***********************************************************************************994443432356799*******78899****************998769***********************************************8 PP

>> TIGR02393  RpoD_Cterm: RNA polymerase sigma factor RpoD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0         1   3.3e+02      83     116 ..      79     112 ..      77     121 .. 0.83
   2 !  182.2   0.0   7.9e-57   2.5e-54       1     229 [.     128     361 ..     128     370 .. 0.94

  Alignments for each domain:
  == domain 1    score: -1.5 bits;  conditional E-value: 1
   TIGR02393  83 vetinklakaerkllqelgrepteeelaeklgle 116
                 ++t+ k   ++ +l  +l+r+pt++e ++++g+ 
  MMETSP1137-20121227|2609_1  79 IQTLCKWVVVREELATRLDRKPTSHEWSQEVGFA 112
                 5677788888999999**********99999864 PP

  == domain 2    score: 182.2 bits;  conditional E-value: 7.9e-57
   TIGR02393   1 akkklvesnlrlvvsiakkylnrGlsfldliqeGniGllkavekfdykkgykfstyatWWirqaitraiadqartiriPvhlvetinklakaerkllqelgrepteeelaeklgleaekvkeikklakepvslekpige......eedselgdfiedeevespedaaakellkeeleevle.tlsereekvlklryGledgkektleevgkefnvtrerirqieskalrklrhpsk 229
                 a++ l++snlrlv  iakky +rG++++dl+qeG +Gl+ a ek+d +   +f+tya +Wi+  i ra+    +tir+Pv + + ++++++++  +lq+ gr p+++elae  g+++ek++ i + +++ vsl++p+ +       + s+l +++ed+  ++pe++ +   l+ +l++ +   l + e +v++l y l+ g ++   +v+++++ t+er+rqie++ lrklr  ++
  MMETSP1137-20121227|2609_1 128 ARDMLITSNLRLVSYIAKKYSGRGIHMQDLVQEGTLGLITAAEKYDAR--VRFATYASYWIHMRIRRAVGTTRQTIRLPVRMSDSVSQIKRMRYDFLQKKGRFPADHELAELAGFSEEKLRLILQATRDHVSLDAPVSRrslgasSSASSLRELLEDTGRTNPEEQLEAYDLRLQLRKAIArVLDPYECRVMELLYALDGGGKRLAPDVASSLGYTQERVRQIEVNSLRKLRSFRQ 361
                 7899*****************************************986..689***********************************************************************************97534433367899***************************9999899************************************************8765 PP

>> TIGR02394  rpoS_proteo: RNA polymerase sigma factor RpoS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  163.8   0.2   3.9e-51   1.2e-48      42     274 ..     123     360 ..     114     370 .. 0.93

  Alignments for each domain:
  == domain 1    score: 163.8 bits;  conditional E-value: 3.9e-51
   TIGR02394  42 aGdvearkkmiesnlrlvvkiakkyvnrGlplldlieeGnlGllkavekfdPerGfrfstyatWWirqtieraimnqartirlPvhvvkelnvvlraarklekkldreasveevaelldkpvedvskllklnekiasldapldeds......ekslldlladekseePeelvqnedlkelieallae.lnekerevlarrfGlreyekatleevakelgltrervrqiqvealkklkril 274
                 +  ++ar  +i snlrlv  iakky +rG+ + dl++eG lGl++a ek+d +   rf+tya++Wi+  i ra+    +tirlPv ++  + ++ r + ++ +k++r ++  e+ael + + e+++ +l+     +sldap+++ s      ++sl +ll d  +++Pee+++  dl+ ++++ +a+ l+  e +v++  + l +  k    +va++lg t+ervrqi v++l+kl+++ 
  MMETSP1137-20121227|2609_1 123 TSMQHARDMLITSNLRLVSYIAKKYSGRGIHMQDLVQEGTLGLITAAEKYDAR--VRFATYASYWIHMRIRRAVGTTRQTIRLPVRMSDSVSQIKRMRYDFLQKKGRFPADHELAELAGFSEEKLRLILQATRDHVSLDAPVSRRSlgasssASSLRELLEDTGRTNPEEQLEAYDLRLQLRKAIARvLDPYECRVMELLYALDGGGKRLAPDVASSLGYTQERVRQIEVNSLRKLRSFR 360
                 556789*********************************************86..7*************************************************************************************98643222223789***********************9999988874788999*******************************************875 PP

>> TIGR02980  SigBFG: RNA polymerase sigma-70 factor, sigma-B/F/G subfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   0.0     0.021       6.7      94     118 ..      87     111 ..      77     123 .. 0.87
   2 !   97.7   0.3   5.3e-31   1.7e-28       2     224 ..     126     358 ..     125     361 .. 0.86

  Alignments for each domain:
  == domain 1    score: 4.1 bits;  conditional E-value: 0.021
   TIGR02980  94 kateeLtqklgrePtveeiaeelev 118
                  ++eeL+++l+r+Pt +e ++e++ 
  MMETSP1137-20121227|2609_1  87 VVREELATRLDRKPTSHEWSQEVGF 111
                 579***************9998875 PP

  == domain 2    score: 97.7 bits;  conditional E-value: 5.3e-31
   TIGR02980   2 keareklvelnlkLvesiarrfrsrgeeleDlvQvgtiGLlkaidrfdlsrgvkFstyavPtivGEikrflRDktwavrvpRrlkelaakikkateeLtqklgrePtveeiaeelevseeevvealeaaksysassldasve.dd...dgdeia...lldtlge..edeeleeveeklalkellak.LdererrilllrffedktQs....eiaeelGiSQmqvSRlekralkklre 224
                 ++ar+ l++ nl+Lv+ ia++++ rg +++DlvQ gt+GL+ a +++d++  v+F tya   i   i+r +  +  ++r+p r+ +  ++ik+++ ++ qk gr P  +e+ae  + see+   +l+a+++    slda+v+  +   + ++ +   ll+  g+   +e+le  + +l l++++a+ Ld+ e r++ l +  d   +    ++a++lG  Q +v  +e ++l+klr+
  MMETSP1137-20121227|2609_1 126 QHARDMLITSNLRLVSYIAKKYSGRGIHMQDLVQEGTLGLITAAEKYDAR--VRFATYASYWIHMRIRRAVGTTRQTIRLPVRMSDSVSQIKRMRYDFLQKKGRFPADHELAELAGFSEEKLRLILQATRD--HVSLDAPVSrRSlgaSSSASSlreLLEDTGRtnPEEQLEAYDLRLQLRKAIARvLDPYECRVMELLYALDGGGKrlapDVASSLGYTQERVRQIEVNSLRKLRS 358
                 6799********************************************85..89****************************************************************************9..8999999874321112333441114455554445778899999*****9997549************98765442222799*********************96 PP

>> TIGR02937  sigma70-ECF: RNA polymerase sigma factor, sigma-70 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   93.5   0.5   7.3e-30   2.3e-27       1     163 [.     127     358 ..     127     359 .. 0.85

  Alignments for each domain:
  == domain 1    score: 93.5 bits;  conditional E-value: 7.3e-30
   TIGR02937   1 ealeqliesylplvykvarkylgdsldaeDlvqegflglikaldkfdpessfktyaysvirnsiidalrrkrelkvtneveiske........................................keeeeledeed..................................rpeeqeeaeelrerleqale.kLperereilklry....leglslkeiAeelgisqetvsrilkraikkLkk 163
                 +a+++li+s+l+lv  +a+ky g++++++Dlvqeg lgli+a +k+d   +f tya ++i+ +i++a  + r ++++++v +s+                                                   +                                  +peeq+ea +lr +l++a++  L++ e ++++l y      +    ++A  lg +qe+v++i+   ++kL++
  MMETSP1137-20121227|2609_1 127 HARDMLITSNLRLVSYIAKKYSGRGIHMQDLVQEGTLGLITAAEKYDARVRFATYASYWIHMRIRRAVGTTR-QTIRLPVRMSDSvsqikrmrydflqkkgrfpadhelaelagfseeklrlilqA---------TrdhvsldapvsrrslgasssasslrelledtgrtNPEEQLEAYDLRLQLRKAIArVLDPYECRVMELLYaldgGGKRLAPDVASSLGYTQERVRQIEVNSLRKLRS 358
                 69*******************************************************************999.99999****99999999999999999999999977766666665555554440.........15555556666666666666666667777788899********************666999999999999666434667789***********************95 PP

>> TIGR02392  rpoH_proteo: alternative sigma factor RpoH
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.0   0.2   2.3e-27   7.1e-25      34     266 ..     126     358 ..     106     361 .. 0.83

  Alignments for each domain:
  == domain 1    score: 86.0 bits;  conditional E-value: 2.3e-27
   TIGR02392  34 leaakkLvlshLrlvvkiargYrgYGLpqadliqegniGLmkavkrfdPergvRlvsfavhWikaeiheyilrn...Wrl.vkvattkaq.rkLFFnlrkakkklkgalseeeveavaeeLgvseeevlemesRlsgkDlsleaeseededeseelieyLadk.eseaeeeleeeeeeekqkeklkealekldersrriieaRwlede.kltLeelaaeygvsaeRvRqiekkalkklka 266
                  +a + L++s+Lrlv  ia++Y+g G+++ dl+qeg +GL+ a  ++d    vR++++a +Wi+  i+  +  +    rl v+++ + +q +++ +++ ++k +      ++e++++a   + + + +l+  +   + D+ +  +s   ++++ +l e+L+d+ ++++ee+le  + + + ++++++ l+  + r  +++ a  l+   k    ++a+ +g  +eRvRqie ++l+kl++
  MMETSP1137-20121227|2609_1 126 QHARDMLITSNLRLVSYIAKKYSGRGIHMQDLVQEGTLGLITAAEKYDA--RVRFATYASYWIHMRIRRAVGTTrqtIRLpVRMSDSVSQiKRMRYDFLQKKGRFP---ADHELAELAGFSEEKLRLILQATRDHVSLDAPVSRRSLGASSSASSLRELLEDTgRTNPEEQLEAYDLRLQLRKAIARVLDPYECRVMELLYA--LDGGgKRLAPDVASSLGYTQERVRQIEVNSLRKLRS 358
                 456778*****************************************85..69***************99965410145567888887775667788888777773...577888888877777888888777777778888888888888888999*****9999**********99999999999999999888888876..66552444569***********************97 PP

>> TIGR02885  spore_sigF: RNA polymerase sigma-F factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   0.0     0.018       5.8      93     125 ..      80     111 ..      64     115 .. 0.78
   2 !   76.6   0.0   1.7e-24   5.5e-22       9     228 ..     125     357 ..     118     359 .. 0.83

  Alignments for each domain:
  == domain 1    score: 4.5 bits;  conditional E-value: 0.018
   TIGR02885  93 kelakkirkekeelakklerePtieelaealgl 125
                 ++l+ k    +eela++l+r+Pt +e ++++g+
  MMETSP1137-20121227|2609_1  80 QTLC-KWVVVREELATRLDRKPTSHEWSQEVGF 111
                 4444.455689***************9988775 PP

  == domain 2    score: 76.6 bits;  conditional E-value: 1.7e-24
   TIGR02885   9 dkeardklveenlrlvssivkrflnrGyeledlfqiGciGlvkaidkfdlsydvkfstyavPliiGeikrflrd.dgiikvsrslkelakkirkekeelakklerePtieelaealglekeevvaalesakslqslydtvhedd....gdpillldkiadeg....eeesdlle.kialkealkk.ldererqiillryfkd....ktqtevakilGisqvqvsrlekkvlkklk 228
                  ++ard l+ +nlrlvs i+k+++ rG +++dl q G++Gl+ a +k+d    v+f+tya   i   i+r +    ++i++   + +  ++i++++  + +k +r P+ +elae +g+++e++   l++++   sl   v++       +   l + ++d+g    ee+ +  + ++ l++a+ + ld+ e +++ l y  d    +   +va+ lG +q +v ++e + l+kl+
  MMETSP1137-20121227|2609_1 125 MQHARDMLITSNLRLVSYIAKKYSGRGIHMQDLVQEGTLGLITAAEKYDA--RVRFATYASYWIHMRIRRAVGTtRQTIRLPVRMSDSVSQIKRMRYDFLQKKGRFPADHELAELAGFSEEKLRLILQATRDHVSLDAPVSRRSlgasSSASSLRELLEDTGrtnpEEQLEAYDlRLQLRKAIARvLDPYECRVMELLYALDgggkRLAPDVASSLGYTQERVRQIEVNSLRKLR 357
                 689*********************************************97..69*****************9752689***99999999***********************************************999987542211333344444455431111233333335899999996549************9983332445689*******************9998 PP

>> TIGR02479  FliA_WhiG: RNA polymerase sigma factor, FliA/WhiG family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.0     0.088        28      88     125 ..      88     127 ..      76     135 .. 0.78
   2 !   73.9   0.3     1e-23   3.2e-21       2     221 ..     133     358 ..     132     360 .. 0.85

  Alignments for each domain:
  == domain 1    score: 2.2 bits;  conditional E-value: 0.088
   TIGR02479  88 aieelearlgrepteeeiaeelgl..dlkevrkaleeina 125
                 ++eel  rl r+pt++e ++e+g   d++  ++al+ +++
  MMETSP1137-20121227|2609_1  88 VREELATRLDRKPTSHEWSQEVGFagDVDRFHDALTSMQH 127
                 6799*****************9974456777777766665 PP

  == domain 2    score: 73.9 bits;  conditional E-value: 1e-23
   TIGR02479   2 vkkylplVkrvaerlkvklpssveleDliqaGmlgLldaierydeekgvkFetyavlRirGai...lDeLRkldwvprslrkkakkleeaieelearlgrepteeeiaeelgldlkevrkaleeinaeslvsldellesedee.....lsladliedkksedpeeelereelkeklaeaiek.LsereklvlsLyYeeeLnlk....EigevLelsesRvsQlhskalkkLra 221
                 +++ l lV ++a++ +    + ++++Dl+q G+lgL++a+e+yd    v+F+tya+++i   i   +   R+   +p ++ + ++++++ + +  ++ gr p ++e+ae  g +++++r +l+++     vsld+  +  + +      sl +l+ed+  ++pee+le  +l+ +l++ai++ L+  e  v++L Y  +   k    +++  L+ ++ Rv Q+  ++l kLr+
  MMETSP1137-20121227|2609_1 133 ITSNLRLVSYIAKKYSG---RGIHMQDLVQEGTLGLITAAEKYDA--RVRFATYASYWIHMRIrraVGTTRQTIRLPVRMSDSVSQIKRMRYDFLQKKGRFPADHELAELAGFSEEKLRLILQAT--RDHVSLDAPVSRRSLGasssaSSLRELLEDTGRTNPEEQLEAYDLRLQLRKAIARvLDPYECRVMELLYALDGGGKrlapDVASSLGYTQERVRQIEVNSLRKLRS 358
                 56667788888887665...5799********************4..48******976655542224678*************************************************999765..4567777776665555556667899****************************976999**********9664433222399**********************96 PP

>> TIGR02850  spore_sigG: RNA polymerase sigma-G factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.0     0.043        14     104     148 ..      68     111 ..      51     124 .. 0.78
   2 !   62.9   0.0   2.1e-20   6.8e-18      33     251 ..     126     357 ..     115     360 .. 0.75

  Alignments for each domain:
  == domain 1    score: 2.9 bits;  conditional E-value: 0.043
   TIGR02850 104 rdnnpirvsrslrdiaykalqvrdklvskkskeptvseiakelev 148
                   n+   +s +++ +  k + vr++l ++ +++pt++e ++e++ 
  MMETSP1137-20121227|2609_1  68 NGNQEETLSAAIQTL-CKWVVVREELATRLDRKPTSHEWSQEVGF 111
                 555555556555554.47788*****************9999876 PP

  == domain 2    score: 62.9 bits;  conditional E-value: 2.1e-20
   TIGR02850  33 keareklingnlrlvlsviqrfnnrgeyvddlfqvgcigllksidnfdlsqnvkfstyavpmiigeirrylrd.nnpirvsrslrdiaykalqvrdklvskkskeptvseiakelevpkeevvfaldaiqdpvslfepiyndg....gdpiyvmdqisde.knkdeswle....eialkealkrlne.reklilklrf.feg...ktqmevaeeigisqaqvsrlekaalkqlk 251
                 ++ar+ li++nlrlv  + ++++ rg +++dl q g +gl+ + +++d    v+f+tya   i   irr +    ++ir+   + d   +  ++r  +++kk + p+ +e+a+  + ++e++ + l+a +d vsl  p+ + +      +  + + ++d  + + e+ le    ++ l++a+ r+ +  e  +++l +  +g   +   +va  +g +q +v ++e  +l++l+
  MMETSP1137-20121227|2609_1 126 QHARDMLITSNLRLVSYIAKKYSGRGIHMQDLVQEGTLGLITAAEKYDA--RVRFATYASYWIHMRIRRAVGTtRQTIRLPVRMSDSVSQIKRMRYDFLQKKGRFPADHELAELAGFSEEKLRLILQATRDHVSLDAPVSRRSlgasSSASSLRELLEDTgRTNPEEQLEaydlRLQLRKAIARVLDpYECRVMELLYaLDGggkRLAPDVASSLGYTQERVRQIEVNSLRKLR 357
                 689*******************************************985..7*****************99651679*************************************************************987541111223333444444322222333331112566677777654413444444433133312223447777888888888777777777766 PP

>> TIGR02835  spore_sigmaE: RNA polymerase sigma-E factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.5   0.0   1.2e-16   3.8e-14      51     117 ..     126     190 ..     117     243 .. 0.90
   2 !   14.6   0.0   1.2e-05    0.0038     162     227 ..     291     357 ..     244     362 .. 0.78

  Alignments for each domain:
  == domain 1    score: 50.5 bits;  conditional E-value: 1.2e-16
   TIGR02835  51 eavksiliernlrlvvyiarkfentginiedlvsigtiglikavntfdpekkiklatyasrcienei 117
                 ++++++li  nlrlv yia+k+   gi+++dlv  gt+gli a + +d   ++++atyas  i   i
  MMETSP1137-20121227|2609_1 126 QHARDMLITSNLRLVSYIAKKYSGRGIHMQDLVQEGTLGLITAAEKYDA--RVRFATYASYWIHMRI 190
                 6799******************************************996..7899*****9886554 PP

  == domain 2    score: 14.6 bits;  conditional E-value: 1.2e-05
   TIGR02835 162 eleeevdrellkkalkk.lndrekkilelrfgladgeektqkevadllgisqsyisrlekrilkrlk 227
                 +le+   r  l+ka+++ l+  e +++el + l +g ++   +va  lg +q  + ++e + l++l+
  MMETSP1137-20121227|2609_1 291 QLEAYDLRLQLRKAIARvLDPYECRVMELLYALDGGGKRLAPDVASSLGYTQERVRQIEVNSLRKLR 357
                 44444446668899987356689************************************99999997 PP

>> TIGR02846  spore_sigmaK: RNA polymerase sigma-K factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.8   0.0   2.2e-16   6.8e-14      47     122 ..     126     199 ..     115     217 .. 0.84
   2 !   14.0   0.0   1.9e-05     0.006     123     223 ..     252     357 ..     242     362 .. 0.72

  Alignments for each domain:
  == domain 1    score: 49.8 bits;  conditional E-value: 2.2e-16
   TIGR02846  47 eearnvliernlrlvahivkkfentgkdvddlisiGtiGlikaidsfdtekGtklatyaarcieneilmllralkk 122
                 ++ar++li  nlrlv++i kk++  g +++dl+  Gt+Gli a + +d+   +++atya+  i+  i   + ++++
  MMETSP1137-20121227|2609_1 126 QHARDMLITSNLRLVSYIAKKYSGRGIHMQDLVQEGTLGLITAAEKYDAR--VRFATYASYWIHMRIRRAVGTTRQ 199
                 68********************************************9875..9*******9998887766655554 PP

  == domain 2    score: 14.0 bits;  conditional E-value: 1.9e-05
   TIGR02846 123 tkgevslqdpiGvdkeGne...islldilssdedsvleavekklevk.klkkkl.kvlkerekevielryGlkdgeektqreiakklgisrsyvsriekkalkkll 223
                 t+++vsl  p+     G      sl ++l+  + +  e+  +  +++ +l+k + +vl++ e +v+el y l  g ++   ++a  lg ++  v +ie ++l+kl 
  MMETSP1137-20121227|2609_1 252 TRDHVSLDAPVSRRSLGASssaSSLRELLEDTGRTNPEEQLEAYDLRlQLRKAIaRVLDPYECRVMELLYALDGGGKRLAPDVASSLGYTQERVRQIEVNSLRKLR 357
                 56667777777666655441113455555544333333322223322257778889***********************************************985 PP

>> TIGR02941  Sigma_B: RNA polymerase sigma-B factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0       1.9   6.1e+02     121     144 ..      88     111 ..      83     117 .. 0.82
   2 !   58.8   0.0   3.6e-19   1.2e-16      27     251 ..     125     358 ..     114     362 .. 0.85

  Alignments for each domain:
  == domain 1    score: -2.5 bits;  conditional E-value: 1.9
   TIGR02941 121 avdeltaelqrspkiaeiadrlgv 144
                 + +el++ l+r p+  e ++++g 
  MMETSP1137-20121227|2609_1  88 VREELATRLDRKPTSHEWSQEVGF 111
                 5699999*****999998888775 PP

  == domain 2    score: 58.8 bits;  conditional E-value: 3.6e-19
   TIGR02941  27 neeaqeklvkkykdlvesiaykyskgsaihedlvqvGmvGllgairrydlsigkafeafaiptiiGeikrylrdktwsvhvprrikelGpkikkavdeltaelqrspkiaeiadrlgvseeevleimemgqsykal...svddkieadsdGstva.lldlvGes..edgydqtekrlvlek.ilpilserekeiiecifienlsqk....etGerlGisqmhvsrlkrraikklke 251
                  ++a++ l++    lv  ia+kys  + + +dlvq G +Gl++a ++yd  +  +f ++a   i   i+r +     ++ +p r+ +  ++ik+   ++ +++ r p   e+a+  g see++  i+++ +++  l      +++ a+s  s++  ll+  G++  e++ +  + rl l+k i  +l+  e +++e ++  +   k    +    lG +q  v +++ ++++kl+ 
  MMETSP1137-20121227|2609_1 125 MQHARDMLITSNLRLVSYIAKKYSGRGIHMQDLVQEGTLGLITAAEKYDARV--RFATYASYWIHMRIRRAVGTTRQTIRLPVRMSDSVSQIKRMRYDFLQKKGRFPADHELAELAGFSEEKLRLILQATRDHVSLdapVSRRSLGASSSASSLReLLEDTGRTnpEEQLEAYDLRLQLRKaIARVLDPYECRVMELLYALDGGGKrlapDVASSLGYTQERVRQIEVNSLRKLRS 358
                 4678899999999************************************976..69999999999*********************************************************99898888765433110334566666666666426788886523788999999**99763778**************8766555344478899*******************96 PP

>> TIGR02859  spore_sigH: RNA polymerase sigma-H factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.1     2e-06   0.00063      17      99 ..     125     205 ..     114     221 .. 0.84
   2 ?    3.3   0.0     0.034        11      88     165 ..     248     325 ..     215     357 .. 0.81

  Alignments for each domain:
  == domain 1    score: 17.1 bits;  conditional E-value: 2e-06
   TIGR02859  17 dekaleyliekyknfvkakarsyflvgadkediiqegmiglykairdykedklssfkafaelcvtrqiitaiktatrqkhipl 99 
                  ++a ++li    ++v   a+ y   g   +d++qeg +gl  a   y++     f ++a   +  +i  a+ t+ +   +p+
  MMETSP1137-20121227|2609_1 125 MQHARDMLITSNLRLVSYIAKKYSGRGIHMQDLVQEGTLGLITAAEKYDAR--VRFATYASYWIHMRIRRAVGTTRQTIRLPV 205
                 57899*****************************************99764..578888888888888888887555555554 PP

  == domain 2    score: 3.3 bits;  conditional E-value: 0.034
   TIGR02859  88 iktatrqkhiplnsyvsldkpiydeesdrtlldvvseakvadpeeliiskeelakieskleellselelkvlvl..yldg 165
                 i  atr  h+ l++ vs  + +    s  +l +++ ++  ++pee + + +   ++++++ ++l   e +v++l   ldg
  MMETSP1137-20121227|2609_1 248 ILQATR-DHVSLDAPVSR-RSLGASSSASSLRELLEDTGRTNPEEQLEAYDLRLQLRKAIARVLDPYECRVMELlyALDG 325
                 556666.48888888874.5677788999999******************999****************99764114665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (445 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       111  (0.02706); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                        19  (0.00463189); expected 4.1 (0.001)
Passed Fwd filter:                        13  (0.00316919); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.46u 0.16s 00:00:00.62 Elapsed: 00:00:00.98
# Mc/sec: 599.34
//
Query:       MMETSP1137-20121227|2610_1  [L=260]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (260 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        68  (0.0165773); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.16s 00:00:00.41 Elapsed: 00:00:00.31
# Mc/sec: 1107.01
//
Query:       MMETSP1137-20121227|2611_1  [L=185]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (185 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        57  (0.0138957); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.17s 00:00:00.36 Elapsed: 00:00:00.55
# Mc/sec: 443.96
//
Query:       MMETSP1137-20121227|2612_1  [L=287]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (287 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        65  (0.0158459); expected 82.0 (0.02)
Passed bias filter:                       34  (0.00828864); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.15s 00:00:00.38 Elapsed: 00:00:00.42
# Mc/sec: 901.93
//
Query:       MMETSP1137-20121227|2613_1  [L=1124]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1124 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       123  (0.0299854); expected 82.0 (0.02)
Passed bias filter:                       42  (0.0102389); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.63u 0.17s 00:00:00.80 Elapsed: 00:00:00.59
# Mc/sec: 2514.50
//
Query:       MMETSP1137-20121227|2614_1  [L=611]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.9e-05   21.4   0.0    0.00074   16.8   0.0    2.1  2  TIGR03896 cyc_nuc_ocin: bacteriocin-type transport-associated protein


Domain annotation for each model (and alignments):
>> TIGR03896  cyc_nuc_ocin: bacteriocin-type transport-associated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    2.5   0.0     0.004        16      13      97 ..     346     425 ..     334     443 .. 0.72
   2 !   16.8   0.0   1.8e-07   0.00074     146     257 ..     449     560 ..     426     572 .. 0.83

  Alignments for each domain:
  == domain 1    score: 2.5 bits;  conditional E-value: 0.004
   TIGR03896  13 iaaettLieeGkaad..dLfilldGaitvtikqeeddaltravelaeLsrGelvGemslleerppvatikaveksrllsipveeLaa 97 
                  a  + L +eG+ ++  +++++ldG++  +++ +            +Ls G+  G  sl+   p  at +       + ip +   a
  MMETSP1137-20121227|2614_1 346 CARYSALFREGSESEerGVWVILDGTAVLRVAGSGRMEQ-------RLSAGDCCGGESLVSSLPRLATCEWLTPGVAMAIPIDRKLA 425
                 555667777887665225888899988888876544444.......89999999999999999999999888888888888765444 PP

  == domain 2    score: 16.8 bits;  conditional E-value: 1.8e-07
   TIGR03896 146 lgeleekDvaWlaksGkkkklsagtvlikegeavdaLYilLaGeaelsisedgasrevgssrrGeilGelsflnsdlaatatvkavealvlLaidkeelaakLqaDvalaer 257
                 +  l++  +  + +  +++ l  g+v+ +  + vdaLY++L+G + ls    +  +e    +  e++G  ++  +   +  +v a  ++ lL ++  +l+   ++ + l +r
  MMETSP1137-20121227|2614_1 449 FDQLDDDAIRRIGRYVEHRVLREGEVVFHAADPVDALYLVLKGTVVLSSPGADGVHEHRLASADELMGAKALRAGLSYSEEAVAADANTLLLLLPCANLSVLTRVAPPLRQR 560
                 5566677777777777888899*************************99988888999999999****99999888888999999999999999999998766666655555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (611 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        76  (0.0185275); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.15s 00:00:00.55 Elapsed: 00:00:00.41
# Mc/sec: 1966.96
//
Query:       MMETSP1137-20121227|2615_1  [L=301]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.04   10.4  19.0      0.033   10.7  12.4    1.3  1  TIGR01651 CobT: cobaltochelatase, CobT subunit


Domain annotation for each model (and alignments):
>> TIGR01651  CobT: cobaltochelatase, CobT subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7  12.4     8e-06     0.033     156     280 ..      87     216 ..      80     266 .. 0.65

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 8e-06
   TIGR01651 156 klvdllrefiee.kaakdldrlsaaiddqqa..farvvrellaslelaeelgddeesedeedtdddqpre.deqeeegeeeeegd.easaaeeaeaaeeeeesgeeeaaeaddddlsdeddedaet.pgea 280
                  ++ ++r+++ + +a++ l+rl a++   +    ar   + l+++e  ++ +d ++  +e ++ddd+ +e d ++ + +  ++++ +a ++  + aa++ ee+   eaaea++d  ++ +de++e   ge+
  MMETSP1137-20121227|2615_1  87 VFLAIFRKQVMAfRARSKLKRLKASLAASKVsrAARKGAKPLRQVEPDDDGADYQDGTEE-EADDDAEEEaDLEKARRKSRKKKSrKAPSTSGSSAAARAEEEEASEAAEAEADAHEERQDEEPECsXGEG 216
                 56788998876549**********998765311566666778888888877777655544.4444444330333333333344440444456678888999999999****************99624554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (301 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       243  (0.0592394); expected 82.0 (0.02)
Passed bias filter:                      120  (0.029254); expected 82.0 (0.02)
Passed Vit filter:                        24  (0.0058508); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.31u 0.14s 00:00:00.45 Elapsed: 00:00:00.47
# Mc/sec: 845.29
//
Query:       MMETSP1137-20121227|2616_1  [L=178]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (178 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        56  (0.0136519); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.14s 00:00:00.33 Elapsed: 00:00:00.33
# Mc/sec: 711.94
//
Query:       MMETSP1137-20121227|2617_1  [L=605]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (605 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       141  (0.0343735); expected 82.0 (0.02)
Passed bias filter:                      107  (0.0260848); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.15s 00:00:00.55 Elapsed: 00:00:00.55
# Mc/sec: 1451.88
//
Query:       MMETSP1137-20121227|2618_1  [L=412]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (412 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       147  (0.0358362); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.17s 00:00:00.48 Elapsed: 00:00:00.56
# Mc/sec: 954.03
//
Query:       MMETSP1137-20121227|2619_1  [L=260]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (260 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        97  (0.023647); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.13s 00:00:00.35 Elapsed: 00:00:00.40
# Mc/sec: 857.93
//
Query:       MMETSP1137-20121227|2620_1  [L=243]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (243 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        79  (0.0192589); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.14s 00:00:00.34 Elapsed: 00:00:00.34
# Mc/sec: 943.33
//
Query:       MMETSP1137-20121227|2621_1  [L=129]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (129 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       142  (0.0346173); expected 82.0 (0.02)
Passed bias filter:                      107  (0.0260848); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.12s 00:00:00.28 Elapsed: 00:00:00.28
# Mc/sec: 587.12
//
Query:       MMETSP1137-20121227|2622_1  [L=98]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (98 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        82  (0.0199902); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.33
# Mc/sec: 391.97
//
Query:       MMETSP1137-20121227|2623_1  [L=283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.2e-43  144.5   0.0    8.5e-43  144.0   0.0    1.2  1  TIGR01408 Ube1: ubiquitin-activating enzyme E1


Domain annotation for each model (and alignments):
>> TIGR01408  Ube1: ubiquitin-activating enzyme E1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  144.0   0.0   2.1e-46   8.5e-43     750     975 ..       4     252 ..       1     278 [. 0.81

  Alignments for each domain:
  == domain 1    score: 144.0 bits;  conditional E-value: 2.1e-46
   TIGR01408 750 vpefkPksdkkiqtdekaekpetaaieddkaaikdlakkidsneallsdlrlkplefekdddsnyhidfitaasnlraknysiepadrlktkfiaGkiiPaiatstavvsGlvalelvkvvdGkkkveaykntflnlaip..lfsfaepleskkvkvrd.....k..ai........tkiwdryvlkg..dltlrelidalkkekGleatmvs....sGv.kllyasllp....khaerlklkvselvkdvtkk 975
                 ++ f P +d+ i td+k+e        +d+a ++  ++k+++++   + +  kp efekddd+n+h+dfi++  nlra+nysie++d++++k  aG+iiPaiat+ta+++G+v lel+k ++   ++ea +n+f+nl++p   + ++ep +  k+k  +     +   +        +++wd+  ++   ++tl  l+d++k  + l +t ++     G  + +y++ lp    k +  l++++ el+++ t +
  MMETSP1137-20121227|2623_1   4 PRAFTPTDDVSIETDNKEEDARR---XKDAADVEAAVDKLLNAQVPAG-FSPKPNEFEKDDDANFHMDFISSFGNLRARNYSIEEIDKFQAKIKAGRIIPAIATTTAMATGFVLLELYKQLNA-LPLEARRNAFANLSLPgpRILLTEPAPCAKIKSGQrwdpeMymDVdevaypegHTLWDKLLVPNaaQMTLAGLLDFFKSTHSLLVTELAlvtaDGKnASIYSATLPtmapKNEANLPKRLAELIEEKTGR 252
                 678*********99999876554...5799***********9999998.*************************************************************************9.9**************6447999******9999643111211111111112222589******987899*************9998876421223432346665443233388888999999999887755 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (283 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        75  (0.0182838); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.26u 0.20s 00:00:00.46 Elapsed: 00:00:00.41
# Mc/sec: 911.05
//
Query:       MMETSP1137-20121227|2624_1  [L=187]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (187 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        70  (0.0170648); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.13s 00:00:00.30 Elapsed: 00:00:00.35
# Mc/sec: 705.20
//
Query:       MMETSP1137-20121227|2625_1  [L=408]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (408 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       204  (0.0497318); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.16s 00:00:00.46 Elapsed: 00:00:00.47
# Mc/sec: 1145.78
//
Query:       MMETSP1137-20121227|2626_1  [L=268]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00013   18.4   0.0    0.00013   18.4   0.0    2.0  2  TIGR03591 polynuc_phos: polyribonucleotide nucleotidyltransferase
    0.00023   17.7   0.1    0.00023   17.7   0.0    1.8  2  TIGR00717 rpsA: ribosomal protein S1
    0.00036   16.8   0.0    0.00036   16.8   0.0    1.6  2  TIGR00358 3_prime_RNase: VacB and RNase II family 3'-5' exoribonucleases
     0.0009   15.4   0.0     0.0009   15.4   0.0    1.7  2  TIGR02063 RNase_R: ribonuclease R
     0.0057   12.9   0.0     0.0087   12.3   0.0    1.2  1  TIGR02696 pppGpp_PNP: guanosine pentaphosphate synthetase I/polyribonucleotide nucleotidyltransferase
  ------ inclusion threshold ------
       0.14    9.6   0.0       0.14    9.6   0.0    2.1  2  TIGR00448 rpoE: DNA-directed RNA polymerase


Domain annotation for each model (and alignments):
>> TIGR03591  polynuc_phos: polyribonucleotide nucleotidyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.0   1.8e-07   0.00013     614     678 ..       7      76 ..       3      88 .. 0.82
   2 ?   -2.4   3.2      0.37   2.5e+02     221     269 ..     206     239 ..     186     266 .. 0.37

  Alignments for each domain:
  == domain 1    score: 18.4 bits;  conditional E-value: 1.8e-07
   TIGR03591 614 aevevgkvyegkvvkiadfgafvellpgkdglvhiSelaeerv.....ekvedvlkegdevkvkvleidk 678
                 a +ev ++++gk+v+ +df +fv+l  g d +vh  +l+ee++     ++  dv ++g +v  k+ +++ 
  MMETSP1137-20121227|2626_1   7 AVPEVFSIHRGKIVSCTDFAVFVRLDTGWDVMVHSTQLDEEKLiaakaKHPGDVYTVGSRVWLKISNVEG 76 
                 5689999********************************99762322245569999*****999999986 PP

  == domain 2    score: -2.4 bits;  conditional E-value: 0.37
   TIGR03591 221 kleveakeedeelkkkveelaeekelkealkieekqereealeevkeev 269
                 +               +e++a+++e ke  k+++k++r+++ ++ + e 
  MMETSP1137-20121227|2626_1 206 E---------------LERRARKRERKEEKKLKKKEKRKKKDRKERREK 239
                 2...............222222222222222222222221111111111 PP

>> TIGR00717  rpsA: ribosomal protein S1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.0   3.3e-07   0.00023     277     343 ..      16      88 ..       7      98 .. 0.59
   2 ?   -3.3   1.9      0.78   5.3e+02      79      96 ..     215     232 ..     190     245 .. 0.47

  Alignments for each domain:
  == domain 1    score: 17.7 bits;  conditional E-value: 3.3e-07
   TIGR00717 277 kgkvtnladyGvfveieegiEGlvhvsElsWek....knskPskvvkvGdevevkvleide..errrvslslK 343
                 +gk++  +d+ vfv +  g + +vh+  l+ ek    k ++P +v +vG  v +k+ +++   +r +++ s+K
  MMETSP1137-20121227|2626_1  16 RGKIVSCTDFAVFVRLDTGWDVMVHSTQLDEEKliaaKAKHPGDVYTVGSRVWLKISNVEGysKRAKLQGSIK 88 
                 5666666666666666666666666666665543333556666666666666666666654113333333555 PP

  == domain 2    score: -3.3 bits;  conditional E-value: 0.78
   TIGR00717  79 vlsrekaqrkeakiklek 96 
                 + ++ek+ +k++k k ++
  MMETSP1137-20121227|2626_1 215 ERKEEKKLKKKEKRKKKD 232
                 222222222222222222 PP

>> TIGR00358  3_prime_RNase: VacB and RNase II family 3'-5' exoribonucleases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0   5.2e-07   0.00036     580     653 ..      16      82 ..       8      85 .. 0.88
   2 ?   -5.5   2.3       2.8   1.9e+03     173     197 ..     212     235 ..     195     244 .. 0.49

  Alignments for each domain:
  == domain 1    score: 16.8 bits;  conditional E-value: 5.2e-07
   TIGR00358 580 egvissvtrfGlfvrldengidglikistlendyyvfdkeklaligkkegkvykigDrvevkleevkleersii 653
                 +g i+s t f +fvrld  g d +++ + l+++ ++        + k+ g vy +g rv  k+++v+   +++ 
  MMETSP1137-20121227|2626_1  16 RGKIVSCTDFAVFVRLD-TGWDVMVHSTQLDEEKLIAA------KAKHPGDVYTVGSRVWLKISNVEGYSKRAK 82 
                 699*************9.9************9988765......567889****************99988875 PP

  == domain 2    score: -5.5 bits;  conditional E-value: 2.8
   TIGR00358 173 pdaveqqaaklqeeveeeakktRed 197
                  +   ++++kl++  e ++kk+R++
  MMETSP1137-20121227|2626_1 212 RKRERKEEKKLKK-KEKRKKKDRKE 235
                 3333333333333.23333344443 PP

>> TIGR02063  RNase_R: ribonuclease R
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   1.3e-06    0.0009     631     706 ..      14      82 ..       9      85 .. 0.88
   2 ?   -2.8   1.2      0.43     3e+02      48      70 ..     204     226 ..     185     262 .. 0.43

  Alignments for each domain:
  == domain 1    score: 15.4 bits;  conditional E-value: 1.3e-06
   TIGR02063 631 efegvissvtsfGlFveLeentieGLvhissLkddyyefdeknlalvGertgkvfrlGdevkvkvvevdkeekkid 706
                 +  g i+s t f +Fv+L++   + +vh ++L+      +ek  a   ++ g v+++G +v  k+ +v+  +k+ +
  MMETSP1137-20121227|2626_1  14 IHRGKIVSCTDFAVFVRLDT-GWDVMVHSTQLD------EEKLIAAKAKHPGDVYTVGSRVWLKISNVEGYSKRAK 82 
                 5689****************.************......567788889999*************999998777765 PP

  == domain 2    score: -2.8 bits;  conditional E-value: 0.43
   TIGR02063  48 keglvkknrkkklakaeelklvk 70 
                 +e+l  + rk+   ++++lk+ +
  MMETSP1137-20121227|2626_1 204 AEELERRARKRERKEEKKLKKKE 226
                 22222222222222222222111 PP

>> TIGR02696  pppGpp_PNP: guanosine pentaphosphate synthetase I/polyribonucleotide nucleotidyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.3   0.0   1.3e-05    0.0087     644     714 ..       7      78 ..       2      84 .. 0.83

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 1.3e-05
   TIGR02696 644 tlpevgerflgtvvkttafgafvsllpgkdgllhiseir..kladgkrvekvedvlsvgekikveiadiddrg 714
                  +pev + + g +v  t f  fv l  g d ++h +++   kl    + ++  dv +vg+++ ++i++++   
  MMETSP1137-20121227|2626_1   7 AVPEVFSIHRGKIVSCTDFAVFVRLDTGWDVMVHSTQLDeeKLIA-AKAKHPGDVYTVGSRVWLKISNVEGYS 78 
                 57999999***************************9885224444.4567789**************998654 PP

>> TIGR00448  rpoE: DNA-directed RNA polymerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.0    0.0002      0.14      79     117 ..       9      48 ..       6      85 .. 0.83
   2 ?   -3.1   3.0       1.5   1.1e+03     136     172 ..     207     243 ..     194     249 .. 0.74

  Alignments for each domain:
  == domain 1    score: 9.6 bits;  conditional E-value: 0.0002
   TIGR00448  79 PelqeiveGevieivefGafvslGp.lddllhvsqvlddy 117
                 Pe+  i  G+++ +++f +fv+l    d ++h  q+ ++ 
  MMETSP1137-20121227|2626_1   9 PEVFSIHRGKIVSCTDFAVFVRLDTgWDVMVHSTQLDEEK 48 
                 88888999**************975378888888876655 PP

  == domain 2    score: -3.1 bits;  conditional E-value: 1.5
   TIGR00448 136 ldvgdkvrarivalslkerkpekskieLtmrqpllgk 172
                 l+   + r r +   lk+++++k+k   + r++  gk
  MMETSP1137-20121227|2626_1 207 LERRARKRERKEEKKLKKKEKRKKKDRKERREKKDGK 243
                 5555566788888999999988888888877776665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (268 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       367  (0.0894686); expected 82.0 (0.02)
Passed bias filter:                      204  (0.0497318); expected 82.0 (0.02)
Passed Vit filter:                        31  (0.00755729); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.32u 0.15s 00:00:00.47 Elapsed: 00:00:00.48
# Mc/sec: 736.94
//
Query:       MMETSP1137-20121227|2627_1  [L=256]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.9e-44  148.3   0.0    3.5e-44  148.0   0.0    1.1  1  TIGR00079 pept_deformyl: peptide deformylase


Domain annotation for each model (and alignments):
>> TIGR00079  pept_deformyl: peptide deformylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  148.0   0.0   8.5e-48   3.5e-44       3     159 ..      85     243 ..      83     245 .. 0.93

  Alignments for each domain:
  == domain 1    score: 148.0 bits;  conditional E-value: 8.5e-48
   TIGR00079   3 evvtypddalreiakpvekvddkiekllddmietmiaeeGiGlAApQvgikkrllvvdledek..kekklvliNPkiiekseeksvleEGCLSvpevkgdviRaekvkikaldregkeitleakgllaiviQHEiDHLnGvlfvdkisklkreklkkel 159
                 +v++yp++ lr  + +v+++dd+++kl+++m+  m+a++G+GlAApQvg++krl+v + + +     ++ +l NP+i+e s+   v  EGCLS+p++ +dv R++ +k+++++ +gk ++ ++ g +a+++QHE+DHL G l+vd++   +r++++ +l
  MMETSP1137-20121227|2627_1  85 RVLKYPHPLLRADNAEVTEFDDSLRKLAKEMFLVMYASQGVGLAAPQVGVNKRLMVFNPDGDRnkWMSETILCNPEIVEFSTAVDVDIEGCLSFPGFTADVSRSSSIKVRYQNARGKWQQKKLXGWVARIFQHEFDHLSGTLYVDRLAASERQRVQPKL 243
                 799******************************************************98877644568899********988887777************************************************************99999887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (256 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        84  (0.0204778); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.23u 0.14s 00:00:00.37 Elapsed: 00:00:00.37
# Mc/sec: 913.22
//
Query:       MMETSP1137-20121227|2628_1  [L=144]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (144 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        44  (0.0107265); expected 82.0 (0.02)
Passed bias filter:                       44  (0.0107265); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.13s 00:00:00.29 Elapsed: 00:00:01.11
# Mc/sec: 171.23
//
Query:       MMETSP1137-20121227|2629_1  [L=214]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (214 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       242  (0.0589956); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.15s 00:00:00.34 Elapsed: 00:00:00.59
# Mc/sec: 478.74
//
Query:       MMETSP1137-20121227|2630_1  [L=356]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.01   14.0   1.1       0.16   10.1   0.1    2.5  2  TIGR01557 myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class


Domain annotation for each model (and alignments):
>> TIGR01557  myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.1     4e-05      0.16       2      37 ..     254     284 ..     253     300 .. 0.81
   2 ?    2.0   0.1     0.014        57       5      22 ..     308     325 ..     305     336 .. 0.77

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 4e-05
   TIGR01557   2 krvvWteelhrrFlqAvqklGgedkatPkkIlelmk 37 
                 +r +W+  +++r lqAvq  G   +   +k+++ m 
  MMETSP1137-20121227|2630_1 254 RRRRWDRFEDERLLQAVQCVGF-SW---SKVAA-ML 284
                 589******************9.99...88844.43 PP

  == domain 2    score: 2.0 bits;  conditional E-value: 0.014
   TIGR01557   5 vWteelhrrFlqAvqklG 22 
                  W+e++ +rF +  +  G
  MMETSP1137-20121227|2630_1 308 AWSEDEAKRFHELFEIHG 325
                 7*********88666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (356 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       100  (0.0243784); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.28u 0.17s 00:00:00.45 Elapsed: 00:00:00.42
# Mc/sec: 1118.76
//
Query:       MMETSP1137-20121227|2631_1  [L=263]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.3e-10   38.3  10.6    1.7e-10   37.9   7.3    1.1  1  TIGR00879 SP: MFS transporter, sugar porter (SP) family


Domain annotation for each model (and alignments):
>> TIGR00879  SP: MFS transporter, sugar porter (SP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.9   7.3   4.1e-14   1.7e-10     380     508 ..      52     173 ..      47     175 .. 0.87

  Alignments for each domain:
  == domain 1    score: 37.9 bits;  conditional E-value: 4.1e-14
   TIGR00879 380 lliG.aagmaiclfvlgilgvssvtgsskaasivaivfillfiaayalgigpvvwvlvsEifplsvRpkgiaiavaanwlanfiiallfpimlensigqgvvFiffgalnvlalilvyfflpetkgltle 508
                 l++G a gma++   ++ +g+ +         + ++v++ +  +++++++++ vw +++E+ p+++R+ g+a++ + +w+ +f  + +  +++  ++++  +  +f + +++al +v  ++pet + +l 
  MMETSP1137-20121227|2631_1  52 LALGgAGGMALAYAAIA-YGYAGRA------PMTIGVGFTALFFCWSASWAGLVWTVSAELLPSHLRAHGMALTIVLYWVLAFATSEVVETLMF-ELTPQRACALFSLGCLAALGYVAACVPETLHSSLI 173
                 55555999999999999.4554444......799999999999****************************************99999999888.5777778888888888*************988876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (263 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       145  (0.0353486); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.24u 0.16s 00:00:00.40 Elapsed: 00:00:00.36
# Mc/sec: 964.25
//
Query:       MMETSP1137-20121227|2632_1  [L=333]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (333 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        57  (0.0138957); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.15s 00:00:00.39 Elapsed: 00:00:00.38
# Mc/sec: 1156.64
//
Query:       MMETSP1137-20121227|2634_1  [L=329]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        1.3    6.1   7.6        2.8    5.0   5.3    1.5  1  TIGR02783 TrbL_P: P-type conjugative transfer protein TrbL


Domain annotation for each model (and alignments):
>> TIGR02783  TrbL_P: P-type conjugative transfer protein TrbL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   5.3   0.00069       2.8     254     290 ..     161     198 ..     153     203 .. 0.71

  Alignments for each domain:
  == domain 1    score: 5.0 bits;  conditional E-value: 0.00069
   TIGR02783 254 vsgasvlgaggavaaaaavagv.aaaggaalaaGalsa 290
                 v g+ +    +++aaaaava++ aaa++a+  aGa s 
  MMETSP1137-20121227|2634_1 161 VPGEASTLTPPTAAAAAAVAAAmAAAAAAVGDAGACSS 198
                 66666666778999999999874666666666787764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (329 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       157  (0.038274); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.25u 0.16s 00:00:00.41 Elapsed: 00:00:00.36
# Mc/sec: 1206.23
//
Query:       MMETSP1137-20121227|2635_1  [L=126]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (126 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        57  (0.0138957); expected 82.0 (0.02)
Passed bias filter:                       41  (0.00999512); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.14s 00:00:00.29 Elapsed: 00:00:00.28
# Mc/sec: 573.47
//
Query:       MMETSP1137-20121227|2636_1  [L=685]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00044   17.8   0.1    0.00076   17.0   0.0    1.2  1  TIGR04033 export_SdpB: antimicrobial peptide system protein, SdpB family


Domain annotation for each model (and alignments):
>> TIGR04033  export_SdpB: antimicrobial peptide system protein, SdpB family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.0   1.8e-07   0.00076     156     253 ..     132     226 ..     124     233 .. 0.84

  Alignments for each domain:
  == domain 1    score: 17.0 bits;  conditional E-value: 1.8e-07
   TIGR04033 156 llrvqvaiiyldaaveklkvk..eWaeGtalyyvlsdPvfGapeylaslmspllesplvvlltWsvlvlelilalgilsnarlrrialvlgillhlGiiv 253
                  +rvq+ai yl aa+ kl+ +  +     a+ y+     + a  + +  ++p + + +v    W+ +v e  ++l+   ++    +a+ lg+llhlGi++
  MMETSP1137-20121227|2636_1 132 TIRVQLAIFYLAAALWKLNTSflDPRYSCASVYM--AQLVDAYAPSLPRTNPFIAEAFVTAGPWLTVVGEAAIGLAAAVAPT---LAVALGLLLHLGIAL 226
                 69****************8652244445566555..5578888899999**********************99998888776...599**********87 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (685 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        75  (0.0182838); expected 82.0 (0.02)
Passed bias filter:                       40  (0.00975134); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.14s 00:00:00.53 Elapsed: 00:00:00.56
# Mc/sec: 1586.18
//
Query:       MMETSP1137-20121227|2637_1  [L=324]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (324 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       112  (0.0273038); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.18s 00:00:00.44 Elapsed: 00:00:00.56
# Mc/sec: 750.25
//
Query:       MMETSP1137-20121227|2638_1  [L=208]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00028   16.5   2.4    0.00044   15.9   1.7    1.3  1  TIGR02168 SMC_prok_B: chromosome segregation protein SMC
  ------ inclusion threshold ------
      0.022   11.6   2.9      0.027   11.3   2.0    1.2  1  TIGR01843 type_I_hlyD: type I secretion membrane fusion protein, HlyD family


Domain annotation for each model (and alignments):
>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   1.7   2.1e-07   0.00044     659     774 ..      79     199 ..      50     207 .. 0.74

  Alignments for each domain:
  == domain 1    score: 15.9 bits;  conditional E-value: 2.1e-07
   TIGR02168 659 rggvitggsek.tessilerkkeieeleeeieeleekiaelekelkelekeleeleeeleklrkeleelerklselkk....elerlekeveqleerlaqlekeleeleeereeleeelee 774
                 +gg+i g+++  +   ++  k+e+e+l+++i++l ++++ l + l+ ++++le++++ele+ r+ ++ +e +l+e+++    +l +l++e  ++e +++++++++  +++++  +++ ++ 
  MMETSP1137-20121227|2638_1  79 EGGIILGKKSGsAGGARVPSKSEMETLRATIQTLCQSCNPLGRCLEYVQEDLEAMAKELEHWRSLKRVKEGELAEEESktegSLISLQNELANVEMQAKEKRSQIRFYKASIVRNDATINR 199
                 5788888877778888999999999999999999999999999999999999999999999888877776555554441111566677777777777777777776666666666665554 PP

>> TIGR01843  type_I_hlyD: type I secretion membrane fusion protein, HlyD family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   2.0   1.3e-05     0.027     149     240 ..      99     191 ..      48     203 .. 0.84

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 1.3e-05
   TIGR01843 149 eaqikqleaeleglqaqlqalrqqleliseeleal.rkLkekglvsrlelLelereraelqgelaeleaeleklkaeldeleeklqeleqkfr 240
                 +++++ l+a +++l +  + l + le+++e lea+ ++L++    +r++  el +e+ +++g+l +l+ el++++ +++e + +++ ++++ +
  MMETSP1137-20121227|2638_1  99 KSEMETLRATIQTLCQSCNPLGRCLEYVQEDLEAMaKELEHWRSLKRVKEGELAEEESKTEGSLISLQNELANVEMQAKEKRSQIRFYKASIV 191
                 567888888889999999999999999999887542679999999999999999999999999999999999999999999999988887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (208 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       229  (0.0558264); expected 82.0 (0.02)
Passed bias filter:                      131  (0.0319356); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.24u 0.15s 00:00:00.39 Elapsed: 00:00:00.42
# Mc/sec: 653.66
//
Query:       MMETSP1137-20121227|2639_1  [L=302]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.4e-06   23.9   0.2      0.097   10.9   0.1    2.5  2  TIGR01557 myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class


Domain annotation for each model (and alignments):
>> TIGR01557  myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.4   0.0   3.3e-05      0.13       1      30 [.     174     200 ..     174     210 .. 0.88
   2 !   10.9   0.1   2.4e-05     0.097       3      27 ..     234     257 ..     233     263 .. 0.90

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 3.3e-05
   TIGR01557   1 kkrvvWteelhrrFlqAvqklGgedkatPk 30 
                 k r +W++ ++++  +Av ++G + +   +
  MMETSP1137-20121227|2639_1 174 KVRRQWSPAEDQMLADAVARYGDQRW---S 200
                 7899******************9988...4 PP

  == domain 2    score: 10.9 bits;  conditional E-value: 2.4e-05
   TIGR01557   3 rvvWteelhrrFlqAvqklGgedka 27 
                 r +Wtee++r   q+v +lG   +a
  MMETSP1137-20121227|2639_1 234 RDHWTEEEDRIIAQGVSELGT-RWA 257
                 679*****************9.885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (302 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        96  (0.0234032); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.23u 0.13s 00:00:00.36 Elapsed: 00:00:00.40
# Mc/sec: 996.52
//
Query:       MMETSP1137-20121227|2640_1  [L=103]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (103 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        79  (0.0192589); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.16s 00:00:00.32 Elapsed: 00:00:00.55
# Mc/sec: 247.18
//
Query:       MMETSP1137-20121227|2641_1  [L=74]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (74 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        75  (0.0182838); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.14s 00:00:00.27 Elapsed: 00:00:00.27
# Mc/sec: 361.75
//
Query:       MMETSP1137-20121227|2642_1  [L=354]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (354 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        51  (0.012433); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.18s 00:00:00.43 Elapsed: 00:00:00.38
# Mc/sec: 1229.58
//
Query:       MMETSP1137-20121227|2643_1  [L=378]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.7e-06   25.8   0.5     0.0081   13.8   0.1    2.8  2  TIGR00231 small_GTP: small GTP-binding protein domain
  ------ inclusion threshold ------
      0.014   12.3   0.4      0.021   11.7   0.3    1.3  1  TIGR00450 mnmE_trmE_thdF: tRNA modification GTPase TrmE


Domain annotation for each model (and alignments):
>> TIGR00231  small_GTP: small GTP-binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.1   0.0   0.00011      0.23       3      25 ..      67      89 ..      65      95 .. 0.86
   2 !   13.8   0.1   3.9e-06    0.0081      39     127 ..     209     302 ..     201     312 .. 0.65

  Alignments for each domain:
  == domain 1    score: 9.1 bits;  conditional E-value: 0.00011
   TIGR00231  3 eikivivGhvdvGKstLlnsllk 25
                 +++v++G +++GK+t+++++  
  MMETSP1137-20121227|2643_1 67 PRQLVLLGGGECGKTTIFKQIQM 89
                5789***************9975 PP

  == domain 2    score: 13.8 bits;  conditional E-value: 3.9e-06
   TIGR00231  39 rdyvteqieedGktykvnllDTaGqedfdairrlyvreverslevvdi.....vilvldveeglekqtke...iiheakkkgvpiilvvnKiDlkd.d 127
                 r+++t  +++    +k+ ++D++Gq   ++ ++l   + +++l+v+++     v++ +d++++  k+      i+  ++  + piil++nK Dl + +
  MMETSP1137-20121227|2643_1 209 RSIETLDFKVGK--AKFRVIDVGGQRMERPKWNLTG-DITAVLFVCSLieydqVLR-EDIKQNRLKESLNlfdIACNRRYVDNPIILFLNKKDLFEeK 302
                 556666666655..89********877777777764.4445555555511110566.77777666655441114445666789**********97743 PP

>> TIGR00450  mnmE_trmE_thdF: tRNA modification GTPase TrmE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.3     1e-05     0.021     296     401 ..     262     369 ..     201     375 .. 0.62

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 1e-05
   TIGR00450 296 lDaskpltkdd.eliitl...kkkkkdlllvlNKiDLaeleilkselkltvsllsakqlkikelvdlltekinalyskekdeldlalisssea.lillekaiaeleqllek 401
                  D++++  k+  +l++     +  +++++l+lNK+DL e++i+k +l +   + +    + ++ ++ +  k  ++ +   +++ +++++++ +    +  + + + ++ e+
  MMETSP1137-20121227|2643_1 262 EDIKQNRLKESlNLFDIAcnrRYVDNPIILFLNKKDLFEEKIKKVDLSVCFPTYK-GGCNYEAAIEFIKFKFMNIRKD--KNKPIYIMETTATnTENMAFIFKSMVDIVER 369
                 48899888887677754311144699************99999987776665544.4567777777777776666555..3567777777776455555566666665555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (378 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       134  (0.032667); expected 82.0 (0.02)
Passed bias filter:                      115  (0.0280351); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.31u 0.17s 00:00:00.48 Elapsed: 00:00:00.42
# Mc/sec: 1187.90
//
Query:       MMETSP1137-20121227|2644_1  [L=629]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.7e-58  195.4   0.0    1.1e-38  130.5   0.0    2.1  2  TIGR01408 Ube1: ubiquitin-activating enzyme E1
    1.6e-26   90.8   0.0    3.6e-26   89.7   0.0    1.5  1  TIGR02356 adenyl_thiF: thiazole biosynthesis adenylyltransferase ThiF
    1.5e-17   61.6   0.1    7.1e-17   59.4   0.0    2.0  2  TIGR02355 moeB: molybdopterin synthase sulfurylase MoeB
      6e-11   40.4   0.0    1.2e-10   39.4   0.0    1.4  1  TIGR02354 thiF_fam2: thiamine biosynthesis protein ThiF
      3e-08   31.1   0.0    7.1e-08   29.9   0.0    1.6  1  TIGR03736 PRTRC_ThiF: PRTRC system ThiF family protein
    4.6e-05   19.8   0.1    7.2e-05   19.2   0.1    1.1  1  TIGR01381 E1_like_apg7: E1-like protein-activating enzyme Gsa7p/Apg7p
  ------ inclusion threshold ------
      0.023   11.4   0.1      0.037   10.8   0.1    1.2  1  TIGR01035 hemA: glutamyl-tRNA reductase
      0.037   11.3   0.1      0.066   10.5   0.0    1.3  1  TIGR01097 PhnE: phosphonate ABC transporter, permease protein PhnE


Domain annotation for each model (and alignments):
>> TIGR01408  Ube1: ubiquitin-activating enzyme E1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  130.5   0.0   2.1e-41   1.1e-38     417     605 ..      19     196 ..       6     227 .. 0.89
   2 !   62.8   0.0   5.7e-21   2.9e-18     774     884 ..     303     405 ..     269     408 .. 0.77

  Alignments for each domain:
  == domain 1    score: 130.5 bits;  conditional E-value: 2.1e-41
   TIGR01408 417 ledlkvflvGaGaiGcellknlallGvatgkkGkitvtdddlieksnlnrqflfrprdigkaksevaasavavinprlkieayqnrvgpetetifddefyeklsvvvnaldnvearlyvdsrclffekPllesGtlGtkgntqvvvPhltesygssrdPPekeiPlctlksfPaaiehtiawardk.feg 605
                 l+ +kv++vGaG iG ellknl+l G       ++tv d d i+ snlnrqflfr  ++g+    +        + +l+i+a     g   e+ f+ +f+++ ++v+naldnv+ar++v++ cl+   Pl+esGt G  g+ +++v   +  ++++   P k+ P+ct+++ P++  h+iawa++  f  
  MMETSP1137-20121227|2644_1  19 LHGIKVLVVGAGGIGSELLKNLTLSGF-----EHVTVIDLDTIDYSNLNRQFLFRAMHVGRSNQXMD----FPHDESLHINAQH---GNIKEERFGFDFFKQFNIVLNALDNVDARRHVNRVCLATGVPLIESGTQGYIGQVRAIVKGKSKCFECDPPAPPKSYPVCTIRNHPDKPVHCIAWAKELlFKK 196
                 67899*******************997.....59**************************9876654....3457889999876...5567889***********************************************************99999999**********************9852444 PP

  == domain 2    score: 62.8 bits;  conditional E-value: 5.7e-21
   TIGR01408 774 aieddkaai.kdlakkidsneallsdlrlkplefekdddsnyhidfitaasnlraknysiepadrlktkfiaGkiiPaiatstavvsGlvalelvkvvdGkkkveaykntfl 884
                 ++e+ +a++ + ++  +++ +a +      +l+f+kdd     +df+taasnlr+  ++i+   r+  k iaG i+Paiat+ a+++G+++le +k++ G   +++ + +  
  MMETSP1137-20121227|2644_1 303 SVEQSAAVLlHTIETVLTQRSAEV-----GALSFDKDDAD--ALDFVTAASNLRSAVFDIPRKSRWDVKEIAGNIVPAIATTNAIIAGFIVLEAFKLLRG--ALDECRYCVC 405
                 223444443133444444444444.....599****9965..69*******************************************************9..5666666655 PP

>> TIGR02356  adenyl_thiF: thiazole biosynthesis adenylyltransferase ThiF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.7   0.0   6.9e-29   3.6e-26      20     178 ..      20     173 ..      14     177 .. 0.89

  Alignments for each domain:
  == domain 1    score: 89.7 bits;  conditional E-value: 6.9e-29
   TIGR02356  20 leskvliiGaGgLgsavaeylaaaGvgtiaivDdDevdlsNlqrqilfaeedvkrpKveaaaerlkelnseirvealkeevtaenle.elieqvdlvlDctDnfktrylindaceaagkPlisaavvgfeGqvavldsskgpclrcllpeapaadtaksC 178
                 +  kvl++GaGg+gs+ ++ l   G  +++++D D++d sNl+rq lf++ +v+r+   +   + +    +++++a + ++ +e+   +  +q ++vl + Dn+++r  +n++c a+g Pli ++  g+ Gqv ++ ++k+ c+ c  p  p  ++ + C
  MMETSP1137-20121227|2644_1  20 HGIKVLVVGAGGIGSELLKNLTLSGFEHVTVIDLDTIDYSNLNRQFLFRAMHVGRSNQXMDFPHDE----SLHINAQHGNIKEERFGfDFFKQFNIVLNALDNVDARRHVNRVCLATGVPLIESGTQGYIGQVRAIVKGKSKCFECDPPAPP--KSYPVC 173
                 5679**************************************************998777666544....5566777888888887527789******************************************************999877..555556 PP

>> TIGR02355  moeB: molybdopterin synthase sulfurylase MoeB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.4   0.0   1.4e-19   7.1e-17      22     157 ..      19     151 ..      13     162 .. 0.83
   2 ?   -1.5   0.0      0.55   2.8e+02      48      71 ..     511     534 ..     508     553 .. 0.88

  Alignments for each domain:
  == domain 1    score: 59.4 bits;  conditional E-value: 1.4e-19
   TIGR02355  22 lkaskvlivGlGGlGcaasqylaaaGvGrltlvdfdtvelsnlqrqvlhsdanigqpkvesakdaleelnphieietinaklddeela.aliakhdvvvdctdnvevrnqlnrqcfaakvplvsgaairleGqvsvf 157
                 l   kvl+vG+GG+G    + l+ +G  ++t++d dt++ snl+rq l +  ++g+       d     +  ++i++   ++++e++  ++ +++++v+++ dnv+ r  +nr c a+ vpl+ + +  + Gqv  +
  MMETSP1137-20121227|2644_1  19 LHGIKVLVVGAGGIGSELLKNLTLSGFEHVTVIDLDTIDYSNLNRQFLFRAMHVGRSNQXM--DF--PHDESLHINAQHGNIKEERFGfDFFKQFNIVLNALDNVDARRHVNRVCLATGVPLIESGTQGYIGQVRAI 151
                 56679*************************************************9865333..22..2334455666666677777643799*******************************99998888988765 PP

  == domain 2    score: -1.5 bits;  conditional E-value: 0.55
   TIGR02355  48 vGrltlvdfdtvelsnlqrqvlhs 71 
                 vG  t +d +  + s +q qvl s
  MMETSP1137-20121227|2644_1 511 VGSGTTLDVEDTSQSXVQMQVLNS 534
                 78889999999*********9975 PP

>> TIGR02354  thiF_fam2: thiamine biosynthesis protein ThiF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.4   0.0   2.4e-13   1.2e-10      19     127 ..      19     125 ..       2     140 .. 0.83

  Alignments for each domain:
  == domain 1    score: 39.4 bits;  conditional E-value: 2.4e-13
   TIGR02354  19 lkkasvaiaGlGGlGsnvainlaraGigklilvdfdvvepsnlnrqq.ykvsdvGkkktealkeqiseinPyveieiidekideenle.klfkdadivieafdnaeakall 127
                 l+  +v ++G GG+Gs++  nl+ +G +++ ++d d ++ snlnrq  +++ +vG+       +  ++    ++i++   +i+ee +  ++fk+ +iv++a+dn  a+  +
  MMETSP1137-20121227|2644_1  19 LHGIKVLVVGAGGIGSELLKNLTLSGFEHVTVIDLDTIDYSNLNRQFlFRAMHVGRSNQX--MDFPHD--ESLHINAQHGNIKEERFGfDFFKQFNIVLNALDNVDARRHV 125
                 6677899***************************************638899***87654..344333..34677888899999998658**************9998655 PP

>> TIGR03736  PRTRC_ThiF: PRTRC system ThiF family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.9   0.0   1.4e-10   7.1e-08      12     128 ..      22     130 ..      12     157 .. 0.76

  Alignments for each domain:
  == domain 1    score: 29.9 bits;  conditional E-value: 1.4e-10
   TIGR03736  12 vkvvlvGaGGtGsqllegLarlhkalkalGhpaGlkvtvlDdDtvseanvgRq.afapadvGankaivlvqRvnqll.gldW.eakperleveealssadlvigavDnrkaRkaileale 128
                 +kv++vGaGG Gs+ll++L          G     +vtv+D Dt+  +n+ Rq +f  + vG++   +       l  +++  + k er+  +   +++++v+ a Dn +aR+++++ + 
  MMETSP1137-20121227|2644_1  22 IKVLVVGAGGIGSELLKNLT-------LSGFE---HVTVIDLDTIDYSNLNRQfLFRAMHVGRSNQXMDFPHDESLHiNAQHgNIKEERFGFD-FFKQFNIVLNALDNVDARRHVNRVCL 130
                 89*************99875.......45777...89****************4578899**9988877655444332433303344455544.44557***************998764 PP

>> TIGR01381  E1_like_apg7: E1-like protein-activating enzyme Gsa7p/Apg7p
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   0.1   1.4e-07   7.2e-05     336     384 ..      20      68 ..      12      76 .. 0.93

  Alignments for each domain:
  == domain 1    score: 19.2 bits;  conditional E-value: 1.4e-07
   TIGR01381 336 ssvkvlllGaGtlGcqvarvllGyGvrhitfvdngkvsfsnPvrqslyn 384
                 + +kvl++GaG +G+++ + l   G  h+t +d  ++ +sn  rq l+ 
  MMETSP1137-20121227|2644_1  20 HGIKVLVVGAGGIGSELLKNLTLSGFEHVTVIDLDTIDYSNLNRQFLFR 68 
                 568******************************************9985 PP

>> TIGR01035  hemA: glutamyl-tRNA reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.1   7.3e-05     0.037     164     211 ..       6      52 ..       2      74 .. 0.82

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 7.3e-05
   TIGR01035 164 ssaAvelaekilgsLkgkkvlliGaGemaeLvakhLkekgvkkvliln 211
                 + aA + a     +L+g kvl++GaG +++ + k+L+  g ++v++++
  MMETSP1137-20121227|2644_1   6 ARAAATAALTGC-DLHGIKVLVVGAGGIGSELLKNLTLSGFEHVTVID 52 
                 556666666666.6********************************97 PP

>> TIGR01097  PhnE: phosphonate ABC transporter, permease protein PhnE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   0.00013     0.066     204     229 ..      26      51 ..      23      56 .. 0.91

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 0.00013
   TIGR01097 204 lvGAGGIGleLaeaiklfeydevsai 229
                 +vGAGGIG+eL +++ l  +++v++i
  MMETSP1137-20121227|2644_1  26 VVGAGGIGSELLKNLTLSGFEHVTVI 51 
                 79*****************9999988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (629 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       173  (0.0421745); expected 82.0 (0.02)
Passed bias filter:                      144  (0.0351048); expected 82.0 (0.02)
Passed Vit filter:                        23  (0.00560702); expected 4.1 (0.001)
Passed Fwd filter:                         8  (0.00195027); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.49u 0.18s 00:00:00.67 Elapsed: 00:00:00.61
# Mc/sec: 1361.00
//
Query:       MMETSP1137-20121227|2645_1  [L=437]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (437 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        91  (0.0221843); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.14s 00:00:00.44 Elapsed: 00:00:00.52
# Mc/sec: 1109.22
//
Query:       MMETSP1137-20121227|2646_1  [L=278]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.9e-13   44.8   0.0    1.1e-12   44.5   0.0    1.0  1  TIGR02917 PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein
    0.00017   19.1   0.0    0.00026   18.6   0.0    1.3  1  TIGR02552 LcrH_SycD: type III secretion low calcium response chaperone LcrH/SycD
     0.0015   17.0   0.0      0.055   11.9   0.0    1.7  2  TIGR02795 tol_pal_ybgF: tol-pal system protein YbgF
     0.0019   15.6   0.0      0.032   11.6   0.0    2.0  2  TIGR02521 type_IV_pilW: type IV pilus biogenesis/stability protein PilW
     0.0024   13.9   0.0     0.0031   13.6   0.0    1.0  1  TIGR03939 PGA_TPR_OMP: poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA


Domain annotation for each model (and alignments):
>> TIGR02917  PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.5   0.0   1.4e-15   1.1e-12     427     546 ..     121     243 ..     104     257 .. 0.88

  Alignments for each domain:
  == domain 1    score: 44.5 bits;  conditional E-value: 1.4e-15
   TIGR02917 427 dpellraellLilsyLrsgefdkalaaakklekkqpdnaslynllgaiylgkkdlakAreafekALkiepdffpAlanLArldlqekniddAkqrfekvlaidpkn...lkallaLaelaark 546
                 ++     ++lL+++  r+ge+  a   a+  ++++pd+ ++  l g +++ + +l++A  afe  L iep++    + L +++l  + i+dA+ +fe+vl+ +p +   ++++  L+el a+ 
  MMETSP1137-20121227|2646_1 121 EDGIEGQRRLLAIALARAGELTVAEPHARCVLESKPDDVEMLFLTGVAHQSRDELDEALDAFESVLAIEPGHWRTNFHLGKMALGVGMIKDAQSYFEEVLKSNPSHepsVEIMSRLFELDAEA 243
                 5445556789999999****************************************************************************************9855567788888887654 PP

>> TIGR02552  LcrH_SycD: type III secretion low calcium response chaperone LcrH/SycD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.0   3.2e-07   0.00026      54     120 ..     161     227 ..     131     239 .. 0.85

  Alignments for each domain:
  == domain 1    score: 18.6 bits;  conditional E-value: 3.2e-07
   TIGR02552  54 ywlgLaaclqalkeyeeAiaaYalaaaldlddprpvyhaaecllalgekeeAlkaLklaieiaeeke 120
                  ++  ++++q  +e +eA++a++  +a+++ + r  +h+++  l +g  ++A++ ++ +++   + e
  MMETSP1137-20121227|2646_1 161 MLFLTGVAHQSRDELDEALDAFESVLAIEPGHWRTNFHLGKMALGVGMIKDAQSYFEEVLKSNPSHE 227
                 55666899***************************************************99887544 PP

>> TIGR02795  tol_pal_ybgF: tol-pal system protein YbgF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.9   0.0   6.7e-05     0.055      43     114 ..     163     231 ..     156     236 .. 0.79
   2 !   10.3   0.0   0.00021      0.17      42      98 ..     196     252 ..     176     254 .. 0.80

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 6.7e-05
   TIGR02795  43 YwlGealyakkkykdAakaflevvkkypksekapdallklgeslqelgqkekAkktlqevikrYPkssaakl 114
                 +++G a  ++ ++++A +af++v++  p + ++    + lg+++   g  ++A+++++ev k  P+ + +++
  MMETSP1137-20121227|2646_1 163 FLTGVAHQSRDELDEALDAFESVLAIEPGHWRTN---FHLGKMALGVGMIKDAQSYFEEVLKSNPSHEPSVE 231
                 6778888889999999999999999888877665...56677777888888899999999999998877655 PP

  == domain 2    score: 10.3 bits;  conditional E-value: 0.00021
   TIGR02795  42 qYwlGealyakkkykdAakaflevvkkypksekapdallklgeslqelgqkekAkkt 98 
                 ++ lG++ +  + +kdA+ +f+ev+k++p++e + + + +l e+ +e  +++ A +t
  MMETSP1137-20121227|2646_1 196 NFHLGKMALGVGMIKDAQSYFEEVLKSNPSHEPSVEIMSRLFELDAEAVESDIAEAT 252
                 789999999999999999999999999999998888887777666666666666655 PP

>> TIGR02521  type_IV_pilW: type IV pilus biogenesis/stability protein PilW
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.6   0.0     4e-05     0.032      37     127 ..     131     221 ..     100     223 .. 0.86
   2 !    5.5   0.0    0.0028       2.3     136     178 ..     194     236 ..     191     253 .. 0.81

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 4e-05
   TIGR02521  37 LaleYleqgdlekAkenlekAleldpkdadanlalAlyyqqlgelekAeesfrkAltlkpnngdvlNNYGtFLcqqkkyeeAeqqfeaAie 127
                 La++  ++g+l++A       le++p+d +     +++ q+  el++A ++f+  l+++p   + +   G      + +++A+ +fe+ ++
  MMETSP1137-20121227|2646_1 131 LAIALARAGELTVAEPHARCVLESKPDDVEMLFLTGVAHQSRDELDEALDAFESVLAIEPGHWRTNFHLGKMALGVGMIKDAQSYFEEVLK 221
                 788888999***************************************************9998888889999999999999999987666 PP

  == domain 2    score: 5.5 bits;  conditional E-value: 0.0028
   TIGR02521 136 rsyeNaglcalkagdtekaekyltralkidpkrpesllelael 178
                 r++  +g  al  g  + a++y+++ lk +p+  +s+  + +l
  MMETSP1137-20121227|2646_1 194 RTNFHLGKMALGVGMIKDAQSYFEEVLKSNPSHEPSVEIMSRL 236
                 55566788888899999***************99998877655 PP

>> TIGR03939  PGA_TPR_OMP: poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   0.0   3.8e-06    0.0031     398     506 ..     128     236 ..     113     252 .. 0.92

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 3.8e-06
   TIGR03939 398 qslkvlllaysgdlseAekkleellatAPgNqslrlalaeveraRgwprrAeqllkkaeslepdslsaergqaetaldlqewrqaealiddlvaryPedkqvqrLarrl 506
                 + l + +la +g+l  Ae +++ +l++ P + ++    +   ++R+  ++A ++++ + ++ep    ++  ++++al ++  + a+   +++ +  P ++ + +++ rl
  MMETSP1137-20121227|2646_1 128 RRLLAIALARAGELTVAEPHARCVLESKPDDVEMLFLTGVAHQSRDELDEALDAFESVLAIEPGHWRTNFHLGKMALGVGMIKDAQSYFEEVLKSNPSHEPSVEIMSRL 236
                 5678889999******************************************************************************************999998776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (278 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        90  (0.0219405); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.27u 0.10s 00:00:00.37 Elapsed: 00:00:00.50
# Mc/sec: 733.86
//
Query:       MMETSP1137-20121227|2647_1  [L=731]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.045   11.9   0.5      0.084   11.0   0.3    1.4  1  TIGR02976 phageshock_pspB: phage shock protein B
      0.089   10.3   1.0       0.16    9.5   0.7    1.3  1  TIGR01477 RIFIN: variant surface antigen, rifin family


Domain annotation for each model (and alignments):
>> TIGR02976  phageshock_pspB: phage shock protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.3   4.1e-05     0.084       6      31 ..     700     725 ..     699     730 .. 0.81

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 4.1e-05
   TIGR02976   6 laiPlivfvifvallwlllhyrskrk 31 
                 ++  liv++++++++wl+l++r+ ++
  MMETSP1137-20121227|2647_1 700 VIGGLIVIILVAVIIWLVLKKRKAKQ 725
                 57789***************994443 PP

>> TIGR01477  RIFIN: variant surface antigen, rifin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   0.7     8e-05      0.16     321     342 ..     703     724 ..     692     728 .. 0.80

  Alignments for each domain:
  == domain 1    score: 9.5 bits;  conditional E-value: 8e-05
   TIGR01477 321 ailiIvlimvIIYLiLrYRRKk 342
                  +++I+l+ vII+L+L+ R+ k
  MMETSP1137-20121227|2647_1 703 GLIVIILVAVIIWLVLKKRKAK 724
                 4799************977654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (731 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       142  (0.0346173); expected 82.0 (0.02)
Passed bias filter:                      114  (0.0277913); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.18s 00:00:00.65 Elapsed: 00:00:00.54
# Mc/sec: 1786.74
//
Query:       MMETSP1137-20121227|2648_1  [L=678]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (678 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        95  (0.0231594); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.15s 00:00:00.59 Elapsed: 00:00:00.87
# Mc/sec: 1028.60
//
Query:       MMETSP1137-20121227|2649_1  [L=167]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0068   11.0   0.0     0.0077   10.8   0.0    1.0  1  TIGR01257 rim_protein: rim ABC transporter


Domain annotation for each model (and alignments):
>> TIGR01257  rim_protein: rim ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.8   0.0   1.9e-06    0.0077    2215    2253 ..      86     124 ..      81     145 .. 0.81

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 1.9e-06
   TIGR01257 2215 larifqllvshkdsllieeysvtqttldqvfvnfakqqt 2253
                  l  +f  l   +d + i e svtq tl+q+f+ fa + +
  MMETSP1137-20121227|2649_1   86 LPELFGELAEARDKFAITECSVTQCTLEQIFILFASKSD 124 
                  66788889999***********************97643 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (167 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        55  (0.0134081); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.19u 0.14s 00:00:00.33 Elapsed: 00:00:00.28
# Mc/sec: 787.22
//
Query:       MMETSP1137-20121227|2650_1  [L=384]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   8.7e-110  364.5   0.7   4.3e-109  362.2   0.5    1.8  1  TIGR01139 cysK: cysteine synthase A
   7.7e-107  354.9   0.7   4.4e-106  352.4   0.5    1.8  1  TIGR01136 cysKM: cysteine synthases
    2.4e-77  258.3   0.9    6.3e-77  257.0   0.6    1.5  1  TIGR01137 cysta_beta: cystathionine beta-synthase
    8.4e-68  226.8   0.1      3e-56  188.9   0.1    2.1  2  TIGR01138 cysM: cysteine synthase B
    2.6e-50  169.0   0.0    1.1e-35  121.1   0.0    2.0  2  TIGR03945 PLP_SbnA_fam: 2,3-diaminopropionate biosynthesis protein SbnA
    1.2e-09   35.5   2.0    4.3e-09   33.6   1.4    1.7  1  TIGR01127 ilvA_1Cterm: threonine dehydratase
    7.8e-09   32.4   0.0    1.2e-08   31.8   0.0    1.2  1  TIGR01124 ilvA_2Cterm: threonine ammonia-lyase, biosynthetic
      3e-08   30.7   0.4    5.9e-08   29.7   0.3    1.3  1  TIGR02079 THD1: threonine dehydratase
    1.5e-07   28.7   0.0    2.3e-07   28.1   0.0    1.2  1  TIGR00260 thrC: threonine synthase
      5e-07   26.8   4.1    8.7e-07   26.0   2.9    1.5  1  TIGR02991 ectoine_eutB: ectoine utilization protein EutB
     0.0026   14.4   0.0     0.0057   13.3   0.0    1.5  1  TIGR01747 diampropi_NH3ly: diaminopropionate ammonia-lyase family
     0.0038   13.6   0.0     0.0068   12.8   0.0    1.3  1  TIGR03528 2_3_DAP_am_ly: diaminopropionate ammonia-lyase


Domain annotation for each model (and alignments):
>> TIGR01139  cysK: cysteine synthase A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  362.2   0.5  1.3e-111  4.3e-109       2     298 .]      32     353 ..      31     353 .. 0.93

  Alignments for each domain:
  == domain 1    score: 362.2 bits;  conditional E-value: 1.3e-111
   TIGR01139   2 seliGntPlvrLn.laeeakaevlvkleslnPsssvkdrialamiedaekegllkkgk.tiveatsGntGialamvaaargykliltmpetmslerrkllkayGaelvLtdgaegmkgaiekaeelveetpnkylllkqfenpanpeihrkttapeilkdldgkldafvagvGtGGtitGvgevlkekkp...............dikvvavePaespvlsgg.......kpgphkiqGigagfiPkvLdkevidevikvsdeeaietarrlakeeGilvGissGaavaaalkvakkle.kdkkivvilpdtgerYlstaLf 298
                 s+l+GntPl+++n +++++ + +++k+esl P+ssvkdr++ ami +aek+g++++gk ++ve+tsGntGiala++a +rgy+ iltmpetms+err++l a+G e+vLt+ ++ + ga++ka+e+v++ +   ++l+qfenpan ++hr+tt+pei+ d+dgk+d+fv+gvGtGGt+tGv++++k k p               ++  vaveP+e  +l+ +       ++gphkiqG+gag +P+vLd ++++ev+ +++eea+++a r+  eeG+ vG+s+Ga + aa+kv  ++e ++k+ v+i+p++gerY++ ++f
  MMETSP1137-20121227|2650_1  32 SDLVGNTPLLKMNkVTDGCVGTIVAKMESLGPCSSVKDRLGRAMIDEAEKAGVITPGKtVLVEPTSGNTGIALAFIARERGYRCILTMPETMSVERRMMLLALGCEVVLTPKETAVVGALAKAHEIVASLGGDGYMLQQFENPANAKVHRHTTGPEIWADTDGKVDVFVSGVGTGGTVTGVSQYIKGKCPtpcdgctsicaprsaSLMTVAVEPMEQMLLTAAkggekigEQGPHKIQGMGAGLVPQVLDLDLVNEVVPIHSEEAMAMASRMWLEEGLPVGVSAGAIMSAAVKVMSRPEmAGKLCVAIVPSFGERYFTHPMF 353
                 689**********999*****************************************9789*******************************************************************9987666***************************************************975433322221222233357789999999999988788999999********************************************************************9*****************99887 PP

>> TIGR01136  cysKM: cysteine synthases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  352.4   0.5  1.3e-108  4.4e-106       2     299 .]      32     353 ..      31     353 .. 0.94

  Alignments for each domain:
  == domain 1    score: 352.4 bits;  conditional E-value: 1.3e-108
   TIGR01136   2 eeliGntPlvrln.lseelkaevlvKlEsrnPsgSvKdRialsmildAekrgllkkgk.tiieatSGNtGiaLAmvaaakgyklilvmpetmslERrkllkayGaelvlteaeegmkgaiekakelaeeepekyvllkqfeNpaNpeaHrkttgpEilkdtdgkidafvagvGtgGtitGvgrvlkekkp...............nvkivavePaespvlseg.......kpgphkiqgigagfiPkildeelldevikvededaietarrlakeegilvGiSsGaavaaalkvakklekedkkivvilpdagerYLstelf 299
                 ++l+GntPl+++n +++++ +++++K+Es  P++SvKdR + +mi +Aek g++++gk +++e+tSGNtGiaLA++a+++gy+ il+mpetms+ERr +l a+G e+vlt++e+   ga++ka+e++++ ++ + +l+qfeNpaN ++Hr+ttgpEi++dtdgk+d+fv+gvGtgGt+tGv++++k k p               ++  vaveP+e  +l+ +       ++gphkiqg+gag +P++ld +l++ev+ +++e+a+++a r+  eeg+ vG+S+Ga + aa+kv  ++e ++k  v+i+p++gerY++ ++f
  MMETSP1137-20121227|2650_1  32 SDLVGNTPLLKMNkVTDGCVGTIVAKMESLGPCSSVKDRLGRAMIDEAEKAGVITPGKtVLVEPTSGNTGIALAFIARERGYRCILTMPETMSVERRMMLLALGCEVVLTPKETAVVGALAKAHEIVASLGGDGYMLQQFENPANAKVHRHTTGPEIWADTDGKVDVFVSGVGTGGTVTGVSQYIKGKCPtpcdgctsicaprsaSLMTVAVEPMEQMLLTAAkggekigEQGPHKIQGMGAGLVPQVLDLDLVNEVVPIHSEEAMAMASRMWLEEGLPVGVSAGAIMSAAVKVMSRPEMAGKLCVAIVPSFGERYFTHPMF 353
                 689******************************************************95689****************************************************************************************************************************976433332222222222357889999999999888788999999**************************************************************************************99887 PP

>> TIGR01137  cysta_beta: cystathionine beta-synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  257.0   0.6   1.8e-79   6.3e-77       4     308 ..      30     350 ..      27     353 .. 0.85

  Alignments for each domain:
  == domain 1    score: 257.0 bits;  conditional E-value: 1.8e-79
   TIGR01137   4 nildliGntPlvrlnkvskglkaevlakveffnaGGsvkdrialrmiedaeksGrlkpgdt.liePtsGntGiGlalvaaikGykciivlPekvseekvdvlkalGaeivrtPtaaafdsPesyigvakrlekeip.gavildqyanasnPlahydttgeeileqlegkldalvagvGtGGtitGiarklkeke....dkvrivGadPeGsila...ep.ee.l........nktektdykveGiGydfiPtvldrkvvdeiiktddkesfkmarrlikeegllvgGssGsavvaalkvaeeelkeddvivvllpdsirnyltk 308
                   +dl+GntPl+++nkv+ g  ++++ak+e + +  svkdr+++ mi++aek G + pg+t l+ePtsGntGi la++a  +Gy+ci+++Pe +s e++ +l alG+e+v tP ++a+      ++ a+ ++  +  + ++l q++n+ n + h +ttg+ei+++++gk+d +v+gvGtGGt+tG+++++k k+    d ++ + a    s+++   ep e+ l        +  e+ ++k++G+G  ++P+vld ++v+e++  + +e++ ma r+  eegl vg s+G+ + aa+kv  +    ++++v+++p  +  y+t 
  MMETSP1137-20121227|2650_1  30 RASDLVGNTPLLKMNKVTDGCVGTIVAKMESLGPCSSVKDRLGRAMIDEAEKAGVITPGKTvLVEPTSGNTGIALAFIARERGYRCILTMPETMSVERRMMLLALGCEVVLTPKETAVVG---ALAKAHEIVASLGgDGYMLQQFENPANAKVHRHTTGPEIWADTDGKVDVFVSGVGTGGTVTGVSQYIKGKCptpcDGCTSICAPRSASLMTvavEPmEQmLltaakggeKIGEQGPHKIQGMGAGLVPQVLDLDLVNEVVPIHSEEAMAMASRMWLEEGLPVGVSAGAIMSAAVKVMSRPEMAGKLCVAIVPSFGERYFTH 350
                 5689*******************************************************76379*************************************************8877643...34444555555541579***************************************************876222256776666655555431112211111111111112246789***************************************************************999999*******999999885 PP

>> TIGR01138  cysM: cysteine synthase B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  188.9   0.1   8.8e-59     3e-56       4     188 ..      33     220 ..      30     224 .. 0.95
   2 !   36.0   0.0   3.4e-12   1.2e-09     210     290 .]     271     353 ..     259     353 .. 0.87

  Alignments for each domain:
  == domain 1    score: 188.9 bits;  conditional E-value: 8.8e-59
   TIGR01138   4 klvGntplvrlkrllpeedsevlvklegnnpaGsvkdrpalsmiveaekrGeikeGd.vlieatsGntGialamvaalkGykvkllmpdnvseerkaalkayGaelilvdkeeGmeGardlarelvrkgeek..lldqfnnpdnpkahytstGieiwqqtkGrithfvsslGttGtimGvsrflkeqn 188
                 +lvGntpl+++++++     ++++k+e+  p+ svkdr   +mi eaek G i +G+ vl+e tsGntGiala +a  +Gy+ +l mp+ +s er+ +l a G e++l+ ke  + Ga   a+e+v    +   +l+qf+np+n k h ++tG+eiw  t+G++  fvs++Gt+Gt++Gvs+++k + 
  MMETSP1137-20121227|2650_1  33 DLVGNTPLLKMNKVTDGCVGTIVAKMESLGPCSSVKDRLGRAMIDEAEKAGVITPGKtVLVEPTSGNTGIALAFIARERGYRCILTMPETMSVERRMMLLALGCEVVLTPKETAVVGALAKAHEIVASLGGDgyMLQQFENPANAKVHRHTTGPEIWADTDGKVDVFVSGVGTGGTVTGVSQYIKGKC 220
                 89******************************************************94579****************************************************************997554444**************************************************9775 PP

  == domain 2    score: 36.0 bits;  conditional E-value: 3.4e-12
   TIGR01138 210 ieseylpgifdaslvdrvvdveqedaediarelakkegifvGvssGgavaaalrlar..elekavvvaiicdrGdrylstgvf 290
                 + + + p++ d  lv++vv ++ e+a  +a ++  +eg+ vGvs+G+ + aa+++    e++  + vai++  G+ry++  +f
  MMETSP1137-20121227|2650_1 271 MGAGLVPQVLDLDLVNEVVPIHSEEAMAMASRMWLEEGLPVGVSAGAIMSAAVKVMSrpEMAGKLCVAIVPSFGERYFTHPMF 353
                 456789***********************************************9865134555899***********998766 PP

>> TIGR03945  PLP_SbnA_fam: 2,3-diaminopropionate biosynthesis protein SbnA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  121.1   0.0   3.1e-38   1.1e-35       3     192 ..      33     221 ..      31     233 .. 0.92
   2 !   46.1   0.0   2.1e-15   7.2e-13     210     295 ..     262     348 ..     243     351 .. 0.93

  Alignments for each domain:
  == domain 1    score: 121.1 bits;  conditional E-value: 3.1e-38
   TIGR03945   3 sligntplvkleklfedekvelfaKlEglnpagSvKdrtAlallekaikegeikpg.ttiiESsSGnlaiaLamvcaalGlkficvvDpkiseanlkllralgaevevveekdetggyLkaRlarvrellaei.pdavwlNQYaneanaeahyettaeeileelk.evdylfvgvsttGtlaGvarrlreksp 192
                 +l+gntpl+k++k+++    ++ aK+E+l p  SvKdr  +a++++a+k g i+pg t+++E +SGn +iaLa++++++G++ i  +   +s + + +l alg ev++  ++ +  g     la+ +e++a+   d + l Q++n+ana++h +tt+ ei ++ + +vd+++ gv+t+Gt++Gv+++++ k p
  MMETSP1137-20121227|2650_1  33 DLVGNTPLLKMNKVTDGCVGTIVAKMESLGPCSSVKDRLGRAMIDEAEKAGVITPGkTVLVEPTSGNTGIALAFIARERGYRCILTMPETMSVERRMMLLALGCEVVLTPKETAVVGA----LAKAHEIVASLgGDGYMLQQFENPANAKVHRHTTGPEIWADTDgKVDVFVSGVGTGGTVTGVSQYIKGKCP 221
                 789****************************************************96889***************************99999999999*******9988877775555....556666666652588***************************************************98876 PP

  == domain 2    score: 46.1 bits;  conditional E-value: 2.1e-15
   TIGR03945 210 epgkRlipGlGasvvpelldeslidevvkvseletvaacrelleregilaGgSsGtvvaavkkllak.ieegstvvailpDrGerYl 295
                 e+g+ +i G+Ga+ vp++ld +l++evv ++ +e++a++ ++  +eg+ +G S+G++++a+ k++++   +g+ +vai+p  GerY 
  MMETSP1137-20121227|2650_1 262 EQGPHKIQGMGAGLVPQVLDLDLVNEVVPIHSEEAMAMASRMWLEEGLPVGVSAGAIMSAAVKVMSRpEMAGKLCVAIVPSFGERYF 348
                 567889****************************************************99888888857788**************7 PP

>> TIGR01127  ilvA_1Cterm: threonine dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.6   1.4   1.3e-11   4.3e-09       1     265 [.      38     323 ..      38     345 .. 0.70

  Alignments for each domain:
  == domain 1    score: 33.6 bits;  conditional E-value: 1.3e-11
   TIGR01127   1 tpleksstlsditgaevylklenlqktGsfkirGalnkiaklseeek....krGvvaasaGnhaqGvalaakvfgikakivmPesaplskvkatksyGaeviLhGad..fDeayklaeelaeeeg..rvfvhafdDef.viaGqGtlgleiledl.pdvdtvivPvGGGGLisGvasavkklnpe....vkviGv..eaeaapslveslkegkikavesvktiaDG....iavkkpgdltfeivkelvDevvavd.eeeiakaillLlerakivaegaGavgvaav 265
                 tpl k + ++d + + +  k+e+l    s k r     i ++ + +     k   v  ++Gn     a+ a+  g ++ + mPe   +++     ++G ev+L  ++  +  a + a+e+ +  g    +++ f+++      + t g ei +d+ ++vd+ +  vG GG ++Gv+  +k + p        i     a  +   ve +++   +a++  + i +     i    +g +   +  +lv+evv ++ ee +a a  + le    v  +aGa+  aav
  MMETSP1137-20121227|2650_1  38 TPLLKMNKVTDGCVGTIVAKMESLGPCSSVKDRLGRAMIDEAEKAGVitpgKTVLVEPTSGNTGIALAFIARERGYRCILTMPETMSVERRMMLLALGCEVVLTPKEtaVVGALAKAHEIVASLGgdGYMLQQFENPAnAKVHRHTTGPEIWADTdGKVDVFVSGVGTGGTVTGVSQYIKGKCPTpcdgCTSICAprSASLMTVAVEPMEQMLLTAAKGGEKIGEQgphkIQGMGAGLVPQVLDLDLVNEVVPIHsEEAMAMASRMWLEEGLPVGVSAGAIMSAAV 323
                 7899999999999999**************999777666655444321111333455689**99999999*********************************876422778999999998875422356799999861456789******9886479**********************9987522222222221123334444555666666666666666653121122223333344444577888887751455777888888888888888888877776 PP

>> TIGR01124  ilvA_2Cterm: threonine ammonia-lyase, biosynthetic
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.8   0.0   3.6e-11   1.2e-08       8     192 ..      28     221 ..      22     248 .. 0.82

  Alignments for each domain:
  == domain 1    score: 31.8 bits;  conditional E-value: 3.6e-11
   TIGR01124   8 karvyeaavetplekaaklserlknrvllkredlqpvfsfklrGaynkmaqlsaeqk...akGv.iaasaGnhaqGvalsakklGvkavivmpettpeikvdavkafGgevvlhGenyd..eakakalelaqekg.ltf.iapfddplvi.aGqGtvalellrqveedldavfvpvGGGGliaGvaalvkqllp 192
                  +r  +   +tpl k++k+++    +++ k e l p  s k r   +++ +  +       k v +  ++Gn    +a+ a++ G + ++ mpet +  +   + a G+evvl  ++     a aka e+    g   + ++ f++p      + t + e+   ++ ++d     vG GG ++Gv+ ++k   p
  MMETSP1137-20121227|2650_1  28 ASRASDLVGNTPLLKMNKVTDGCVGTIVAKMESLGPCSSVKDRLGRAMIDEAEKAGVitpGKTVlVEPTSGNTGIALAFIARERGYRCILTMPETMSVERRMMLLALGCEVVLTPKETAvvGALAKAHEIVASLGgDGYmLQQFENPANAkVHRHTTGPEIWADTDGKVDVFVSGVGTGGTVTGVSQYIKGKCP 221
                 5777788899*********************************999999876654331112334144689*************************999999999*********887654116778888876654414442689*99976516789*********99888876668**************97666 PP

>> TIGR02079  THD1: threonine dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.7   0.3   1.7e-10   5.9e-08       8     302 ..      29     340 ..      23     345 .. 0.76

  Alignments for each domain:
  == domain 1    score: 29.7 bits;  conditional E-value: 1.7e-10
   TIGR02079   8 krlkevvketPlqknerlsekykaeiylkredlqevrsyklrGaynklkqlsdeel....ekgvvcasaGnhaqGvayacrklgvkgtvfmPvttPkqkvdkvklfGgefievilvGdtfdeaaaaakkavek..egktlipPfddkdiie.GqgtvaveileqleeekidlvlvpvGGGGlisGvtsylkekskk...tkiigvePeGapslkaslkagevvtld..kidkfvdGaavkrvGdlnfkalk.....kvvdevtlveegavcstildlynkegi.vaePaGalsiaaleels.eeikgktvvcvv 302
                  r  ++v +tPl k +++++    +i  k e l    s k r    ++ +  +++     + ++v  ++Gn    +a+  r+ g +  + mP t    ++  +   G e +           a a+a++ v++   + ++++ f++++  +  + t + ei  + +  k+d+ + +vG GG ++Gv+ y+k k ++        + P+ a+ ++ +++  e + l   k  + +     +++  +    +      ++v+ev++++ ++  +    ++ +eg+ v   aGa+  aa++ +s  e+ gk  v++v
  MMETSP1137-20121227|2650_1  29 SRASDLVGNTPLLKMNKVTDGCVGTIVAKMESLGPCSSVKDRLGRAMIDEAEKAGVitpgKTVLVEPTSGNTGIALAFIARERGYRCILTMPETMSVERRMMLLALGCEVVLT-PKETAVVGALAKAHEIVASlgGDGYMLQQFENPANAKvHRHTTGPEIWADTDG-KVDVFVSGVGTGGTVTGVSQYIKGKCPTpcdGCTSICAPRSASLMTVAVEPMEQMLLTaaKGGEKIGEQGPHKIQGMGAGLVPqvldlDLVNEVVPIHSEEAMAMASRMWLEEGLpVGVSAGAIMSAAVKVMSrPEMAGKLCVAIV 340
                 5667899***********************************9999998888876533337789999**************************99888877777777765533.2334455678899999987224689*******98765257899******9877.7***********************98752212345689999999999999877766641144455555544444333333333000014556888888888777888888888884556788888888887775788888888887 PP

>> TIGR00260  thrC: threonine synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.1   0.0   6.6e-10   2.3e-07      21     117 ..      36     130 ..      21     178 .. 0.76

  Alignments for each domain:
  == domain 1    score: 28.1 bits;  conditional E-value: 6.6e-10
   TIGR00260  21 gstelfrspklaeevgaenlyvkelfhgPtlaFKDrglqfvavlltkalelgne..tvlcAtsGdtgaaaaealagkanvkvvvLyPkgkispvkeklv 117
                 g+t+l++++k++    +  +  k +++gP  + KDr ++ +    +ka + +    +++  tsG+tg a+a  +a+  + +++  +P+  +s v+ +++
  MMETSP1137-20121227|2650_1  36 GNTPLLKMNKVTDGCVG-TIVAKMESLGPCSSVKDRLGRAMIDEAEKAGVITPGktVLVEPTSGNTGIALA-FIARERGYRCILTMPET-MS-VERRMM 130
                 78999999999955444.5**********************99999987765434277779**********.9999***********98.66.655554 PP

>> TIGR02991  ectoine_eutB: ectoine utilization protein EutB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.0   2.9   2.5e-09   8.7e-07       7     194 ..      25     222 ..      17     340 .. 0.78

  Alignments for each domain:
  == domain 1    score: 26.0 bits;  conditional E-value: 2.5e-09
   TIGR02991   7 eraaeriagrveetplveseslsellGvpvllklesrqttGsfklrGatnavlslsda....eraaGvvaastGnhGralayaakkegvravicmselvpqnkvdeirrlGaevrivGrsq......ddaqeeverlvkerGlvmlppfdhadiv.aGqGtlglevveqvpdlalvlv.plsGGGlasGvavavkalkpa 194
                  r a+r +  v +tpl + + +++ +   +  k+es  +  s k r     +   ++a      ++ +v  ++Gn G ala+ a++ g r+++ m e + +++   +  lG ev +  +         +a e v  l  + G  ml  f++++     + t g e+ ++      v+v  +  GG ++Gv+  +k++ p+
  MMETSP1137-20121227|2650_1  25 MRIASRASDLVGNTPLLKMNKVTDGCVGTIVAKMESLGPCSSVKDRLGRAMIDEAEKAgvitPGKTVLVEPTSGNTGIALAFIARERGYRCILTMPETMSVERRMMLLALGCEVVLTPKETavvgalAKAHEIVASLGGD-G-YMLQQFENPANAkVHRHTTGPEIWADTDGKVDVFVsGVGTGGTVTGVSQYIKGKCPT 222
                 456778888899********************************99877666544433111023445677889****************************************987665431111114455555555555.3.6999***9876516789******999876655555167889***********99875 PP

>> TIGR01747  diampropi_NH3ly: diaminopropionate ammonia-lyase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   0.0   1.7e-05    0.0057      94     146 ..      89     141 ..      77     164 .. 0.91

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 1.7e-05
   TIGR01747  94 datfvtatdGnhGrGvawaaeklGqkavvympkGsaqeraeniekeGaevtit 146
                 ++++v  t Gn G  +a+ a++ G ++++ mp   + er   +   G ev++t
  MMETSP1137-20121227|2650_1  89 KTVLVEPTSGNTGIALAFIARERGYRCILTMPETMSVERRMMLLALGCEVVLT 141
                 5788999*******************************************987 PP

>> TIGR03528  2_3_DAP_am_ly: diaminopropionate ammonia-lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.8   0.0     2e-05    0.0068     112     165 ..      88     141 ..      76     157 .. 0.90

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 2e-05
   TIGR03528 112 gditfvtatdGnhGrGvawaanklgqksvvymPkGsaqerlenirkeGaeatit 165
                 g+ ++v  t Gn G  +a+ a++ g ++++ mP   + er+  + + G+e+++t
  MMETSP1137-20121227|2650_1  88 GKTVLVEPTSGNTGIALAFIARERGYRCILTMPETMSVERRMMLLALGCEVVLT 141
                 56788999******************************************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (384 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       133  (0.0324232); expected 82.0 (0.02)
Passed bias filter:                      118  (0.0287665); expected 82.0 (0.02)
Passed Vit filter:                        21  (0.00511945); expected 4.1 (0.001)
Passed Fwd filter:                        12  (0.0029254); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.50u 0.14s 00:00:00.64 Elapsed: 00:00:00.62
# Mc/sec: 817.48
//
Query:       MMETSP1137-20121227|2651_1  [L=573]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.1e-41  137.8   0.0    1.2e-40  137.1   0.0    1.3  1  TIGR02881 spore_V_K: stage V sporulation protein K
    3.1e-36  122.9   0.0      7e-36  121.8   0.0    1.5  2  TIGR02880 cbbX_cfxQ: CbbX protein
    7.8e-31  105.1   0.0    1.2e-30  104.4   0.0    1.2  1  TIGR03922 T7SS_EccA: type VII secretion AAA-ATPase EccA
    5.5e-05   19.9   0.0    8.6e-05   19.3   0.0    1.2  1  TIGR01241 FtsH_fam: ATP-dependent metallopeptidase HflB
     0.0019   14.0   0.4     0.0037   13.0   0.0    1.5  2  TIGR03348 VI_IcmF: type VI secretion protein IcmF
     0.0051   13.7   0.0      0.015   12.2   0.0    1.8  1  TIGR00635 ruvB: Holliday junction DNA helicase RuvB
     0.0071   13.4   0.0      0.015   12.4   0.0    1.5  1  TIGR02397 dnaX_nterm: DNA polymerase III, subunit gamma and tau
  ------ inclusion threshold ------
      0.031   12.1   0.0      0.031   12.1   0.0    2.5  2  TIGR03499 FlhF: flagellar biosynthesis protein FlhF


Domain annotation for each model (and alignments):
>> TIGR02881  spore_V_K: stage V sporulation protein K
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  137.1   0.0   2.3e-43   1.2e-40       5     232 ..      30     257 ..      27     276 .. 0.85

  Alignments for each domain:
  == domain 1    score: 137.1 bits;  conditional E-value: 2.3e-43
   TIGR02881   5 leklvGleevkelikeiyalilinekrkeeglkaekqvlhmifkGnPGtGkttva.rllaklfkelnvlskGhlieveradlvGeyiGhtaqktrevikkalGGvlfideayslarGGekdfGkeaidtlvkemed..kreelvlilaGysdemdyfls.lnPGlksrfpisldfpdytveelleiakkmveereyklteeakaklreklakvksasekefsnarlvrnlie 232
                 l +l Gl++v  + +++  l ++ e+ k++g +a ++    +f GnPGtGkttva r +a++++ +++ls+  +      dl G y Ght +++ + + +a+GGvlfideay+l rG    f +ea d+lv +m +  + ++ v+ilaGy++ m+ +ls  nPG+ksr++  + fpd++  +  e+++   e    +l e+++++l   la+ ++  ++  +nar    +  
  MMETSP1137-20121227|2651_1  30 LAALAGLHKVEGVKRQLEELRAVVEQCKRDGRNAFEHLQSYVFVGNPGTGKTTVAhRAMAQMLHAIGLLSRATFHSCSGLDLQGAYCGHTKERVNKAMAEAQGGVLFIDEAYTLGRGT--VFAQEAQDQLVAQMTEpaHLNQTVVILAGYKEPMEQMLSeCNPGIKSRLTGYIAFPDWDEMDCEEVVRGNCERDGIELPEDTRQALLLGLATLRR--RTGWANARDATTIFR 257
                 56778888776666666666666677777888888888899*************9789**********************************************************96..6*************87335579*************999637***************************999999999999999999888888775..455667776655555 PP

>> TIGR02880  cbbX_cfxQ: CbbX protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  121.8   0.0   1.4e-38     7e-36      24     242 ..      33     252 ..      20     283 .. 0.86
   2 ?   -3.4   0.0         2     1e+03      24      49 ..     353     378 ..     338     383 .. 0.75

  Alignments for each domain:
  == domain 1    score: 121.8 bits;  conditional E-value: 1.4e-38
   TIGR02880  24 liglkpvktrireiaalllverlrqklglasaapslhmsftgnpgtgkttvalr.makilhrlgyvrkghlvsvtrddlvgqyightapktkevlkramggvlfideayylyrpdnerdygqeaieillqvmen..qrddlvvilagykdrmdsff.esnpglssrvahhvdfpdyseeellaiaellleeqqyrlsaeaeealaeyialrrkqpffanarsi 242
                 l gl+ v    r++  l  v +  ++ g  + +      f gnpgtgkttva r ma++lh +g + +    s +  dl g y ght  +  + +  a+ggvlfideay l r      + qea + l+  m +  + ++ vvilagyk+ m+++  e npg++sr++ ++ fpd+ e +  ++     e     l +++++al   +a  r++  +anar  
  MMETSP1137-20121227|2651_1  33 LAGLHKVEGVKRQLEELRAVVEQCKRDGRNAFEHLQSYVFVGNPGTGKTTVAHRaMAQMLHAIGLLSRATFHSCSGLDLQGAYCGHTKERVNKAMAEAQGGVLFIDEAYTLGRGT---VFAQEAQDQLVAQMTEpaHLNQTVVILAGYKEPMEQMLsECNPGIKSRLTGYIAFPDWDEMDCEEVVRGNCERDGIELPEDTRQALLLGLATLRRRTGWANARDA 252
                 556666666666666665554445555555555556678*************9879*******************************************************9975...699****999988865225689************9976378********************************************99999988888899**9964 PP

  == domain 2    score: -3.4 bits;  conditional E-value: 2
   TIGR02880  24 liglkpvktrireiaalllverlrqk 49 
                  +g  p  +r+ e+a    ve++ ++
  MMETSP1137-20121227|2651_1 353 ALGTMPATERVEEVAMEEXVEEVEEQ 378
                 46889999999999988888877666 PP

>> TIGR03922  T7SS_EccA: type VII secretion AAA-ATPase EccA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  104.4   0.0   2.3e-33   1.2e-30     275     492 ..      30     246 ..      14     280 .. 0.87

  Alignments for each domain:
  == domain 1    score: 104.4 bits;  conditional E-value: 2.3e-33
   TIGR03922 275 LakqiGler...vkeqvaalkssvevalvRaerGlavaqrskHlllaGPPGtGkttiA.rvvakiyaGlgvlrkpevrEvsRadligeyigeseaktnelidkaLggvlFlDEayaLvekrdgakddfGleaidtLLarlE..ndRdrlvviiAGYekdlDklL.evneGLrsRFtrkieFesYspdElveiakrmaeerdsvlddaAaealleaatklaqestp 492
                 La++ Gl++   vk+q++ l++ ve     ++ G +  ++ +  +++G PGtGktt+A r++a+++  +g+l + +    s  dl g y g+++++ n+ + +a ggvlF+DEay+L       +  f +ea d+L+a++   ++ ++ vvi AGY++ ++++L e n+G++sR t  i F+ +   +  e+ +   e+    l +  ++all    +l++++  
  MMETSP1137-20121227|2651_1  30 LAALAGLHKvegVKRQLEELRAVVE---QCKRDGRNAFEHLQSYVFVGNPGTGKTTVAhRAMAQMLHAIGLLSRATFHSCSGLDLQGAYCGHTKERVNKAMAEAQGGVLFIDEAYTLG-----RGTVFAQEAQDQLVAQMTepAHLNQTVVILAGYKEPMEQMLsECNPGIKSRLTGYIAFPDWDEMDCEEVVRGNCERDGIELPEDTRQALLLGLATLRRRTGW 246
                 5556666541116888888887766...4556788888889999*************978*********************************************************5.....5689*************645799*****************9779******************9999999999999999999999999999999999998865 PP

>> TIGR01241  FtsH_fam: ATP-dependent metallopeptidase HflB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.0   1.7e-07   8.6e-05      56     178 ..      37     157 ..       4     185 .. 0.67

  Alignments for each domain:
  == domain 1    score: 19.3 bits;  conditional E-value: 1.7e-07
   TIGR01241  56 kdvaGideakeelveivdfLknpkk..ftklGakiPkGvllvGpPGtGktLla.kavaGe.......agvpffsisGsdfvemfvGvGasrvrDlfeqakknaPciifiDeiDavGrkrgaglgggndereqt 178
                 + v G++ + eel  +v+  k+  +  f++l     +  ++vG+PGtGkt +a +a+a         +   f s sG d+   + G   +rv   + +a+    +++fiDe  ++Gr    ++++  + ++q 
  MMETSP1137-20121227|2651_1  37 HKVEGVKRQLEELRAVVEQCKRDGRnaFEHL-----QSYVFVGNPGTGKTTVAhRAMAQMlhaigllSRATFHSCSGLDLQGAYCGHTKERVNKAMAEAQ---GGVLFIDEAYTLGRGT--VFAQ--EAQDQL 157
                 5677888888888888888887655224554.....66899*********998556664311111125679*********************87766665...589*******999743..3222..222222 PP

>> TIGR03348  VI_IcmF: type VI secretion protein IcmF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   0.0   7.3e-06    0.0037      81     131 ..      37      87 ..      16      95 .. 0.80
   2 ?   -3.2   0.4      0.56   2.9e+02     831     848 ..     500     517 ..     435     544 .. 0.50

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 7.3e-06
   TIGR03348  81 aeiaelearlkealallkksrlkkrrylyelPWYlviGppGsGKTtllknS 131
                  +++ ++ +l+e  a++++ ++++r++ ++l  Y+ +G pG+GKTt+ +++
  MMETSP1137-20121227|2651_1  37 HKVEGVKRQLEELRAVVEQCKRDGRNAFEHLQSYVFVGNPGTGKTTVAHRA 87 
                 77888999999999999999999***********************97765 PP

  == domain 2    score: -3.2 bits;  conditional E-value: 0.56
   TIGR03348 831 aaaaaepekgaveehFea 848
                  + +++++   v+e+ e+
  MMETSP1137-20121227|2651_1 500 RERQLQERLRLVAEEAER 517
                 222222222222222222 PP

>> TIGR00635  ruvB: Holliday junction DNA helicase RuvB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.2   0.0     3e-05     0.015      15      68 ..      48     105 ..      36     150 .. 0.57

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 3e-05
   TIGR00635  15 klqlfikaakk.rk...ealdhvllyGPPGlGkttlakiiakelgvklkitsgpalek 68 
                 +l+ +++ +k+  +   e+l+  +++G PG Gktt+a+   +++   + + s  +++ 
  MMETSP1137-20121227|2651_1  48 ELRAVVEQCKRdGRnafEHLQSYVFVGNPGTGKTTVAHRAMAQMLHAIGLLSRATFHS 105
                 4555555444313301145555699************977777766666555544443 PP

>> TIGR02397  dnaX_nterm: DNA polymerase III, subunit gamma and tau
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.4   0.0   2.9e-05     0.015      37      62 ..      68      94 ..      59     109 .. 0.81

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 2.9e-05
   TIGR02397 37 hayLfsGprGvGKTsiA.rilAkalNC 62
                ++y+f G+ G+GKT++A r +A+ l  
  MMETSP1137-20121227|2651_1 68 QSYVFVGNPGTGKTTVAhRAMAQMLHA 94
                68**************97788888765 PP

>> TIGR03499  FlhF: flagellar biosynthesis protein FlhF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   6.1e-05     0.031     186     213 ..      55      82 ..      20     100 .. 0.74
   2 ?   -3.5   3.2       3.4   1.7e+03      60     122 ..     493     513 ..     355     542 .. 0.64

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 6.1e-05
   TIGR03499 186 svkkeedeilekggviaLvGptGvGKTT 213
                 ++k   +++ e+ + +++vG++G GKTT
  MMETSP1137-20121227|2651_1  55 QCKRDGRNAFEHLQSYVFVGNPGTGKTT 82 
                 457777788888889***********98 PP

  == domain 2    score: -3.5 bits;  conditional E-value: 3.4
   TIGR03499  60 aseeeeakkaleeaepkklskaeekeekekeaeekaaeaaqeaekkleeaeeelrkelkalke 122
                 a++e+ +++                                          ++l++ l+ + e
  MMETSP1137-20121227|2651_1 493 AENERRERE------------------------------------------RQLQERLRLVAE 513
                 111111111..........................................111111111111 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (573 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       276  (0.0672843); expected 82.0 (0.02)
Passed bias filter:                      152  (0.0370551); expected 82.0 (0.02)
Passed Vit filter:                        28  (0.00682594); expected 4.1 (0.001)
Passed Fwd filter:                         8  (0.00195027); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.52u 0.15s 00:00:00.67 Elapsed: 00:00:00.66
# Mc/sec: 1145.91
//
Query:       MMETSP1137-20121227|2652_1  [L=467]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (467 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       134  (0.032667); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.17s 00:00:00.51 Elapsed: 00:00:00.44
# Mc/sec: 1400.88
//
Query:       MMETSP1137-20121227|2653_1  [L=202]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (202 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        65  (0.0158459); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.13s 00:00:00.31 Elapsed: 00:00:00.31
# Mc/sec: 860.06
//
Query:       MMETSP1137-20121227|2655_1  [L=838]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.3e-16   56.1   0.0    5.1e-16   55.5   0.0    1.1  1  TIGR03903 TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
    8.6e-05   18.7   0.0    0.00013   18.2   0.0    1.2  1  TIGR01693 UTase_glnD: protein-P-II uridylyltransferase
    0.00012   19.4   0.0    0.00023   18.5   0.0    1.3  1  TIGR03724 arch_bud32: Kae1-associated kinase Bud32


Domain annotation for each model (and alignments):
>> TIGR03903  TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.5   0.0   3.7e-19   5.1e-16       4     185 ..     479     652 ..     477     670 .. 0.86

  Alignments for each domain:
  == domain 1    score: 55.5 bits;  conditional E-value: 3.7e-19
   TIGR03903   4 hkvaikllRedaaeeerlvaRFrReialCarLshPnivaLlDsGeaedgllFavFeyveGrtlrevLaadG.....aLpaaetgrLmlqvLDalaaahdaGvvhRDLkPqnimvsaadveshakvLDFGigaLlpgvedadeatltrttevlGsPaYaaPeqLRgepvtaksDlYaWGLivleCLtG 185
                 + va k+l+++ +      + F  e  + ++L hP i +   + ++e      v ey++G  l + L   G     + pa e +rL l v  ++   h+ G++hRD+k  ni++   d+++hak+ DFGi++   +       + t++    G+  + aPe +       k D++++G+++ e +  
  MMETSP1137-20121227|2655_1 479 QMVATKVLKHELMHYPEAHRSFMQEAYAFEQLDHPSICKFYGKFVCEG-APALVLEYMAGGNLYDYLHCRGrtpcnVQPADELSRLALEVAAGIEYXHSVGLMHRDIKSTNILL---DDQRHAKISDFGISTRA-DLP-----EHTAE---TGTYRFMAPEVITQQKYDNKCDVFSFGMLLWEMMHQ 652
                 789******999988888889***********************9997.66779****************94444445799*******************************98...899***********843.222.....23444...59**************************99997655 PP

>> TIGR01693  UTase_glnD: protein-P-II uridylyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.0   9.5e-08   0.00013     623     729 ..     209     323 ..     197     354 .. 0.72

  Alignments for each domain:
  == domain 1    score: 18.2 bits;  conditional E-value: 9.5e-08
   TIGR01693 623 lveraeedyflrstskeiaehaellleaessgeplalisktep........sgatevliyakDqagllakvaaalaakslsvhdAqvitskdgvaldtfvvqdlngsaveeerra 729
                 l+  +   y  +++++e   ha++l+   ++++  ++   + +          ++ + ++ +D++g + ++ +al++ +l  +dA v+ + dg+a+d f + ++++++ ++  ++
  MMETSP1137-20121227|2655_1 209 LADSLPPHYREQTSEEERLMHARMLRTLRQQPSRYSVSMWKDQgawdhsgqGRTVRLHVVFPDRPGSIGVILSALGKLGLCFRDAAVFVTADGYAVDAFTIGPVYAELHAQLGKH 323
                 4445555666666777777777777766666554433222222123322224679999***********************************************9998877544 PP

>> TIGR03724  arch_bud32: Kae1-associated kinase Bud32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.0   1.6e-07   0.00023      74     146 ..     530     615 ..     500     621 .. 0.79

  Alignments for each domain:
  == domain 1    score: 18.5 bits;  conditional E-value: 1.6e-07
   TIGR03724  74 ivmeyiegkklkdlleekel............ellkevGelvgklHkagivhgDlttsNiivkddk.lyliDfGLgkkskevedka 146
                 +v+ey+ g +l d+l+ +              +l+ ev+  +   H+ g++h D+  +Ni+++d++ + + DfG++ + +  e++a
  MMETSP1137-20121227|2655_1 530 LVLEYMAGGNLYDYLHCRGRtpcnvqpadelsRLALEVAAGIEYXHSVGLMHRDIKSTNILLDDQRhAKISDFGISTRADLPEHTA 615
                 6677777777777666655456666666666678889999999*******************766515677******999998877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (838 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       107  (0.0260848); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.58u 0.19s 00:00:00.77 Elapsed: 00:00:00.42
# Mc/sec: 2633.50
//
Query:       MMETSP1137-20121227|2656_1  [L=103]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (103 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        62  (0.0151146); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.24
# Mc/sec: 566.45
//
Query:       MMETSP1137-20121227|2657_1  [L=428]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00078   17.0   0.0     0.0014   16.2   0.0    1.4  1  TIGR01385 TFSII: transcription elongation factor S-II


Domain annotation for each model (and alignments):
>> TIGR01385  TFSII: transcription elongation factor S-II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0   3.4e-07    0.0014      14      80 ..     102     174 ..      92     237 .. 0.79

  Alignments for each domain:
  == domain 1    score: 16.2 bits;  conditional E-value: 3.4e-07
   TIGR01385  14 vvssknveqvidilkqLkklpvteellketkvGlkvnklrk.....kpnedikklakeliksWKkvvike.ek 80 
                 ++   +v+ + + l++L+ l vt+ ll++ +v  ++ kl+k     +   d+ ++a +l + W+k v+k   k
  MMETSP1137-20121227|2657_1 102 AIRFADVSRAKECLDELEPLQVTVPLLRRSNVLAELSKLAKlgkdmHELSDVGHRAAKLRERWRKLVKKPpGK 174
                 55557899999*************************999985555556679****************995422 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (428 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        79  (0.0192589); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.29u 0.16s 00:00:00.44 Elapsed: 00:00:00.48
# Mc/sec: 1176.90
//
Query:       MMETSP1137-20121227|2660_1  [L=760]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (760 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        31  (0.00755729); expected 82.0 (0.02)
Passed bias filter:                       26  (0.00633837); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.14s 00:00:00.58 Elapsed: 00:00:00.61
# Mc/sec: 1644.45
//
Query:       MMETSP1137-20121227|2662_1  [L=244]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (244 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       111  (0.02706); expected 82.0 (0.02)
Passed bias filter:                       96  (0.0234032); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.10s 00:00:00.31 Elapsed: 00:00:00.34
# Mc/sec: 947.22
//
Query:       MMETSP1137-20121227|2663_1  [L=218]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (218 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        69  (0.0168211); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.15s 00:00:00.35 Elapsed: 00:00:00.60
# Mc/sec: 479.56
//
Query:       MMETSP1137-20121227|2665_1  [L=814]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (814 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       131  (0.0319356); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.50u 0.15s 00:00:00.65 Elapsed: 00:00:00.42
# Mc/sec: 2558.07
//
Query:       MMETSP1137-20121227|2667_1  [L=243]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.1e-05   22.4   1.2    1.3e-05   22.1   0.8    1.1  1  TIGR03257 met_CoM_red_bet: methyl-coenzyme M reductase, beta subunit
  ------ inclusion threshold ------
      0.017   12.9   4.4      0.024   12.3   3.1    1.2  1  TIGR04032 toxin_SdpC: antimicrobial peptide, SdpC family
      0.023   10.2   9.0      0.027   10.0   6.3    1.0  1  TIGR02168 SMC_prok_B: chromosome segregation protein SMC
      0.064    8.7   4.9       0.07    8.6   3.4    1.0  1  TIGR02169 SMC_prok_A: chromosome segregation protein SMC
        2.5    6.2  12.5       0.64    8.2   6.2    1.8  2  TIGR03495 phage_LysB: phage lysis regulatory protein, LysB family


Domain annotation for each model (and alignments):
>> TIGR03257  met_CoM_red_bet: methyl-coenzyme M reductase, beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.1   0.8   1.6e-08   1.3e-05     290     375 ..      82     171 ..      50     188 .. 0.76

  Alignments for each domain:
  == domain 1    score: 22.1 bits;  conditional E-value: 1.6e-08
   TIGR03257 290 lykaddvakwnayaaaglvaatlvncga.araaqnvsstilyfndileketglpgvdygraegtavg..fsffshsi..yggggpgifngn 375
                  y+++dva   a +a+ + aa+ v+  a ar+ q+    +   +d+l  et + g d g+  g+  g    +   s+  y gg pg  ng 
  MMETSP1137-20121227|2667_1  82 GYGSEDVADVAAESAVATAAAAAVSSAAtARSGQAAVNLLGQTEDLLGLETEFEGFDIGKDLGSNCGgqTNYGGQSVpnY-GGQPGDSNGG 171
                 49999*******9999999988887665389999999999999********************99883324555666313.5668887776 PP

>> TIGR04032  toxin_SdpC: antimicrobial peptide, SdpC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   3.1     3e-05     0.024      80     133 ..      57     111 ..      46     123 .. 0.73

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 3e-05
   TIGR04032  80 dealtkggellqeaaaedeaatskdgkvtgean.lvavvavaavlavvvvaaVAv 133
                 ++++++ +++l +aa+e e++++ +g + ++++ + a+ ava+++a++v +a+++
  MMETSP1137-20121227|2667_1  57 QQLMQDINDALAKAAQEREHKLRLAGYGSEDVAdVAAESAVATAAAAAVSSAATA 111
                 689**************9*****99987766650555555555555555555544 PP

>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   6.3   3.2e-05     0.027     704     809 ..       2     107 ..       1     136 [. 0.58

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 3.2e-05
   TIGR02168 704 elekeleeleeeleklrkeleelerklselkkelerlekeveqleerlaqlekeleeleeereeleeeleeaeeelkeaeeeieeleaeieqlkeelkalrealse 809
                 el+ +  +l++ l+ lr+ lee++r ls+++++ ++l++e +++ee+ ++ e+  ++l + ++ + ++ ++++e++ +      e  a++++ ++ ++a  +a+s+
  MMETSP1137-20121227|2667_1   2 ELKADDHDLQSYLHGLRTSLEEESRXLSAAQARRAKLQQELRTCEEECSNHEAVKQQLMQDINDALAKAAQEREHKLRLAGYGSEDVADVAAESAVATAAAAAVSS 107
                 5566666777777777777777777777777777777777777777777777777777777777666666666655444433333333333333333333333333 PP

>> TIGR02169  SMC_prok_A: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   3.4   8.6e-05      0.07     851     918 ..       8      75 ..       1     119 [. 0.44

  Alignments for each domain:
  == domain 1    score: 8.6 bits;  conditional E-value: 8.6e-05
   TIGR02169 851 keiekeieelkakleeleeeleeleaavreLeeelkdLkkereeleaelrelekkkeeleaeiekkrk 918
                 ++++  ++ l+++lee ++ l  ++a+ ++L++el   ++e +++ea +++l + ++++ a++ ++r+
  MMETSP1137-20121227|2667_1   8 HDLQSYLHGLRTSLEEESRXLSAAQARRAKLQQELRTCEEECSNHEAVKQQLMQDINDALAKAAQERE 75 
                 22222222233333333333333333333333333333333333333333333333322222222222 PP

>> TIGR03495  phage_LysB: phage lysis regulatory protein, LysB family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   6.2   0.00078      0.64      21      85 ..      14      79 ..       9      90 .. 0.88
   2 ?   -1.5   0.0      0.78   6.4e+02      26      48 ..      95     117 ..      78     127 .. 0.52

  Alignments for each domain:
  == domain 1    score: 8.2 bits;  conditional E-value: 0.00078
   TIGR03495 21 lrearaslekaekalkaqqaelekkanqleallaeakrneeaqaqLrqqlaqaea.llaqrekrie 85
                l+ +r+sle+ ++ l+a+qa  +k ++ l   ++e +++e+ ++qL q  ++a a ++++re++++
  MMETSP1137-20121227|2667_1 14 LHGLRTSLEEESRXLSAAQARRAKLQQELRTCEEECSNHEAVKQQLMQDINDALAkAAQEREHKLR 79
                56799******************************************9999875515667888875 PP

  == domain 2    score: -1.5 bits;  conditional E-value: 0.78
   TIGR03495  26 aslekaekalkaqqaelekkanq 48 
                   +++a +a+ +++a++ + +++
  MMETSP1137-20121227|2667_1  95 SAVATAAAAAVSSAATARSGQAA 117
                 33344444444444444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (243 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       332  (0.0809361); expected 82.0 (0.02)
Passed bias filter:                      201  (0.0490005); expected 82.0 (0.02)
Passed Vit filter:                        33  (0.00804486); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.30u 0.16s 00:00:00.46 Elapsed: 00:00:00.39
# Mc/sec: 822.39
//
Query:       MMETSP1137-20121227|2668_1  [L=189]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        1.6    4.1   9.6        1.6    4.0   6.6    1.0  1  TIGR00927 2A1904: K+-dependent Na+/Ca+ exchanger


Domain annotation for each model (and alignments):
>> TIGR00927  2A1904: K+-dependent Na+/Ca+ exchanger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   6.6   0.00039       1.6     726     857 ..      60     163 ..      21     189 .] 0.46

  Alignments for each domain:
  == domain 1    score: 4.0 bits;  conditional E-value: 0.00039
   TIGR00927 726 vtpapapedkgdqeedpgsqgdvaeaeakgertgeeaeaeteaegekdeesggeae..qegeseekaeeeseGeieaerkgedegegeieakeaevkGeeeeeeveaeeeteaeGdedegeieaeeeGeekede 857
                  +  pa +++g + e   +  ++  ae++  + ++  ++e +aeg+++++++   e   +  ++ + +e++ G ++  r+ge+++eg+ +a + ++   +e                           +++e+ 
  MMETSP1137-20121227|2668_1  60 KVELPAGDVRGHRREGEEAHAQR--AEKRIAKHEDARRHEEQAEGHRGDKRDALIElaLQLTQQRHHRERRRGALH--RHGEEADEGHRRAARQDHTHADEG--------------------------KVVEQL 163
                 23345555555555543333332..333333333333333445555555555544421333333334444444443..345555555555555555444333..........................333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (189 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       123  (0.0299854); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.20u 0.13s 00:00:00.33 Elapsed: 00:00:00.72
# Mc/sec: 346.47
//
Query:       MMETSP1137-20121227|2670_1  [L=94]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (94 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        54  (0.0131643); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.15s 00:00:00.28 Elapsed: 00:00:00.30
# Mc/sec: 413.57
//
Query:       MMETSP1137-20121227|2671_1  [L=72]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        40  (0.00975134); expected 82.0 (0.02)
Passed bias filter:                       35  (0.00853242); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.30
# Mc/sec: 316.77
//
Query:       MMETSP1137-20121227|2672_1  [L=524]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.03   11.5   0.0       0.05   10.8   0.0    1.2  1  TIGR03516 ppisom_GldI: peptidyl-prolyl isomerase, gliding motility-associated
      0.084    9.5   0.0       0.13    8.9   0.0    1.2  1  TIGR00115 tig: trigger factor


Domain annotation for each model (and alignments):
>> TIGR03516  ppisom_GldI: peptidyl-prolyl isomerase, gliding motility-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   2.4e-05      0.05     113     151 ..     429     467 ..     419     473 .. 0.88

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 2.4e-05
   TIGR03516 113 gpktykvdqedlisGlrdglklmkegeevtfllPsykay 151
                  p + ++ q dli Glr+gl+ ++ g    +++Ps  +y
  MMETSP1137-20121227|2672_1 429 EPYRLSLGQSDLIPGLREGLRGLRVGGVRRLVVPSALGY 467
                 56677899***************************9988 PP

>> TIGR00115  tig: trigger factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   0.0   6.5e-05      0.13     149     202 ..     399     457 ..     387     463 .. 0.73

  Alignments for each domain:
  == domain 1    score: 8.9 bits;  conditional E-value: 6.5e-05
   TIGR00115 149 aekgDivtidfegkv...dGeafeggkaed..felelgsgqfipgfeeqlvGmkaGeek 202
                 +e++ ++t+ + g     +G  fe   a+d  + l lg++ +ipg+ e+l G+ +G ++
  MMETSP1137-20121227|2672_1 399 VEEDSRITLHVLGRLvgkQGWIFEDSRADDepYRLSLGQSDLIPGLREGLRGLRVGGVR 457
                 56666666666664424456668887775533889999*****************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (524 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        96  (0.0234032); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.36u 0.13s 00:00:00.49 Elapsed: 00:00:00.49
# Mc/sec: 1411.48
//
Query:       MMETSP1137-20121227|2673_1  [L=140]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (140 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        83  (0.020234); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.17s 00:00:00.35 Elapsed: 00:00:00.28
# Mc/sec: 659.95
//
Query:       MMETSP1137-20121227|2674_1  [L=1102]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1102 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        84  (0.0204778); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.64u 0.15s 00:00:00.79 Elapsed: 00:00:00.76
# Mc/sec: 1913.84
//
Query:       MMETSP1137-20121227|2675_1  [L=355]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (355 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        47  (0.0114578); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.14s 00:00:00.40 Elapsed: 00:00:00.40
# Mc/sec: 1171.40
//
Query:       MMETSP1137-20121227|2676_1  [L=37]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (37 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        22  (0.00536324); expected 82.0 (0.02)
Passed bias filter:                       22  (0.00536324); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:00.31
# Mc/sec: 157.54
//
Query:       MMETSP1137-20121227|2677_1  [L=101]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        98  (0.0238908); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.15s 00:00:00.31 Elapsed: 00:00:00.53
# Mc/sec: 251.53
//
Query:       MMETSP1137-20121227|2678_1  [L=135]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.44    6.8  11.0       0.51    6.6   7.7    1.0  1  TIGR01642 U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor


Domain annotation for each model (and alignments):
>> TIGR01642  U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   7.7   0.00012      0.51      35     118 ..      14      94 ..       9     126 .. 0.49

  Alignments for each domain:
  == domain 1    score: 6.6 bits;  conditional E-value: 0.00012
   TIGR01642  35 RdRdrrdrrrsrrkdsRdRdrrrydsrsissleedsrrrSRdrirrrsrsssseskerrrsrkrsssnekkkddkkrslwdvkp 118
                 R R+  +r r   +d R  +  r++ +s ++++ + +rr  + ++++++ +s  s    +   ++ +++++k++kkr  w+  +
  MMETSP1137-20121227|2678_1  14 RTRKISERMRVFDEDTRR-EITRRRLESLEKDNWQEERRKEEDEDEEEYVLSASSG--DEVAVSAAKKQRRKKQKKRDAWNASQ 94 
                 555555566666555543.2233333333333333333333333444444443333..33444555566666677777776543 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (135 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       271  (0.0660653); expected 82.0 (0.02)
Passed bias filter:                      145  (0.0353486); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.20u 0.19s 00:00:00.39 Elapsed: 00:00:00.46
# Mc/sec: 387.36
//
Query:       MMETSP1137-20121227|2679_1  [L=87]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (87 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        33  (0.00804486); expected 82.0 (0.02)
Passed bias filter:                       29  (0.00706972); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.13s 00:00:00.25 Elapsed: 00:00:00.26
# Mc/sec: 441.66
//
Query:       MMETSP1137-20121227|2680_1  [L=133]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (133 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        31  (0.00755729); expected 82.0 (0.02)
Passed bias filter:                       24  (0.0058508); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.15s 00:00:00.32 Elapsed: 00:00:00.33
# Mc/sec: 531.96
//
Query:       MMETSP1137-20121227|2681_1  [L=169]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (169 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        31  (0.00755729); expected 82.0 (0.02)
Passed bias filter:                       31  (0.00755729); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.13s 00:00:00.32 Elapsed: 00:00:00.53
# Mc/sec: 420.87
//
Query:       MMETSP1137-20121227|2682_1  [L=403]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (403 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       180  (0.043881); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.17s 00:00:00.47 Elapsed: 00:00:00.50
# Mc/sec: 1063.83
//
Query:       MMETSP1137-20121227|2683_1  [L=539]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (539 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        83  (0.020234); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.14s 00:00:00.48 Elapsed: 00:00:00.66
# Mc/sec: 1077.91
//
Query:       MMETSP1137-20121227|2684_1  [L=628]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      7e-34  115.2   0.0    2.7e-33  113.3   0.0    1.9  1  TIGR00577 fpg: formamidopyrimidine-DNA glycosylase


Domain annotation for each model (and alignments):
>> TIGR00577  fpg: formamidopyrimidine-DNA glycosylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  113.3   0.0   6.6e-37   2.7e-33      31     226 ..       8     228 ..       4     271 .. 0.83

  Alignments for each domain:
  == domain 1    score: 113.3 bits;  conditional E-value: 6.6e-37
   TIGR00577  31 rkvvkrpaesedlqkellgktilsikRrgKyLlleldkgvv.....alvihlrmegk..........lrleekkeae.kekhvkvelll........ddGkeLryaDkRkFgtllllekteveeslllakLgpeplseeftaealfeklkkkkrkiktlLLDq.klvsGiGNiyadEvLfaakihPerlassLskeeiellhkaikevLekAieaggttik 226
                 +kv++   ++ d +++l+gk ++   RrgK L+lel++  +      l+ hl+m+g+          ++ ++++++  + +++k+el+l        ++  ++ + D+R+Fg++ll +++++++ ++++ L+ +p++   t +++  klk+ +  +k++LLDq k+v G+GN+ adE L++aki+P   a+sLs+ ++++lh a+ +v ++A + ++++ +
  MMETSP1137-20121227|2684_1   8 DKVLADAVNPGDYAAALKGKWVRASCRRGKQLWLELSESPTgptslCLLLHLGMTGSvvirgigaahYKNFTVDCTSwPPRFTKLELTLaxhkgkskQEAVVVAFPDPRRFGRVLLRHTSDATSCPPVSALAADPIASPPTLDDFSTKLKRLSAPVKAVLLDQsKIVCGVGNWVADECLWQAKINPSSPANSLSEPQLAALHAALLSVCTEACACNAESDR 228
                 667777889999**************************9889999999999999998222222222244566777766789****9999332222222344799***********************************************************45788*********************************************99999866 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (628 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       151  (0.0368113); expected 82.0 (0.02)
Passed bias filter:                       44  (0.0107265); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.15s 00:00:00.57 Elapsed: 00:00:00.48
# Mc/sec: 1726.86
//
Query:       MMETSP1137-20121227|2685_1  [L=420]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (420 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        93  (0.0226719); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.17s 00:00:00.48 Elapsed: 00:00:00.39
# Mc/sec: 1421.42
//
Query:       MMETSP1137-20121227|2686_1  [L=484]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      0.001   17.0   0.1       0.17   10.0   0.0    3.3  3  TIGR00756 PPR: pentatricopeptide repeat domain
  ------ inclusion threshold ------
      0.039   12.0   0.1       0.16   10.1   0.1    2.0  1  TIGR00789 flhB_rel: FlhB domain protein


Domain annotation for each model (and alignments):
>> TIGR00756  PPR: pentatricopeptide repeat domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.0       1.8   3.8e+03      20      30 ..     162     172 ..     162     175 .. 0.71
   2 !   10.0   0.0   8.1e-05      0.17       5      32 ..     300     327 ..     298     329 .. 0.94
   3 ?    2.9   0.0     0.015        30      14      29 ..     425     440 ..     424     443 .. 0.88

  Alignments for each domain:
  == domain 1    score: -3.7 bits;  conditional E-value: 1.8
   TIGR00756  20 lelfdeMkerg 30 
                 +el++e++++ 
  MMETSP1137-20121227|2686_1 162 WELYCELRRAE 172
                 67888888765 PP

  == domain 2    score: 10.0 bits;  conditional E-value: 8.1e-05
   TIGR00756   5 tlisglckagrveeAlelfdeMkergiv 32 
                 +++++++ + +++ ++el++e ++rgi 
  MMETSP1137-20121227|2686_1 300 AMLNACALNDELDRGVELLQEAHARGIT 327
                 79************************95 PP

  == domain 3    score: 2.9 bits;  conditional E-value: 0.015
   TIGR00756  14 grveeAlelfdeMker 29 
                  ++e A++ +++M+++
  MMETSP1137-20121227|2686_1 425 DDFETAFSALHKMIRD 440
                 69***********987 PP

>> TIGR00789  flhB_rel: FlhB domain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.1   7.6e-05      0.16      21      45 ..     341     365 ..     338     368 .. 0.91

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 7.6e-05
   TIGR00789  21 vAsGkGevAekiielAkkfgialke 45 
                 vA Gk +vA+ ++++A+++g+ +++
  MMETSP1137-20121227|2686_1 341 VADGKVDVAQALVQMAREHGLDIHD 365
                 89******************99875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (484 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       116  (0.0282789); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.35u 0.16s 00:00:00.51 Elapsed: 00:00:00.48
# Mc/sec: 1330.89
//
Query:       MMETSP1137-20121227|2688_1  [L=142]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (142 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        48  (0.0117016); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.13s 00:00:00.30 Elapsed: 00:00:00.27
# Mc/sec: 694.16
//
Query:       MMETSP1137-20121227|2690_1  [L=281]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (281 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       104  (0.0253535); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.15s 00:00:00.37 Elapsed: 00:00:00.40
# Mc/sec: 927.22
//
Query:       MMETSP1137-20121227|2692_1  [L=185]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (185 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       144  (0.0351048); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.12s 00:00:00.32 Elapsed: 00:00:00.33
# Mc/sec: 739.94
//
Query:       MMETSP1137-20121227|2693_1  [L=388]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (388 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        78  (0.0190151); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.18s 00:00:00.46 Elapsed: 00:00:00.40
# Mc/sec: 1280.29
//
Query:       MMETSP1137-20121227|2694_1  [L=355]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.19   10.1   4.1       0.11   10.7   0.5    2.3  3  TIGR03165 F1F0_chp_2: F1/F0 ATPase, Methanosarcina type, subunit 2


Domain annotation for each model (and alignments):
>> TIGR03165  F1F0_chp_2: F1/F0 ATPase, Methanosarcina type, subunit 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0       0.3   1.2e+03      25      45 ..      80      99 ..      79     113 .. 0.65
   2 ?   10.7   0.5   2.8e-05      0.11      37      78 ..     126     167 ..      94     172 .. 0.86
   3 ?   -0.9   0.1      0.12     5e+02       6      24 ..     239     258 ..     235     279 .. 0.71

  Alignments for each domain:
  == domain 1    score: -2.2 bits;  conditional E-value: 0.3
   TIGR03165 25 vrkllasrrPallllgSlLlR 45
                vr++l   +P+ll l  +L+ 
  MMETSP1137-20121227|2694_1 80 VRRMLGDTSPWLLGL-TMLVS 99
                666666677777765.45554 PP

  == domain 2    score: 10.7 bits;  conditional E-value: 2.8e-05
   TIGR03165  37 lllgSlLlRtalvlagllllarggweiLlaallGflvarvva 78 
                 l lgS+Ll ++  +  +l+l ++++  ++ a+ G+ +a  v+
  MMETSP1137-20121227|2694_1 126 LSLGSMLLNLFFQTVIFLYLLDNDTSYMILASSGVGLAIEVW 167
                 6789******************************98776655 PP

  == domain 3    score: -0.9 bits;  conditional E-value: 0.12
   TIGR03165   6 allaGlllGavf.fggLwlt 24 
                 ++l G ++G v+ fg + +t
  MMETSP1137-20121227|2694_1 239 SWLLGSVVGCVYtFGFIMMT 258
                 67888888988844444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (355 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        92  (0.0224281); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.26u 0.13s 00:00:00.39 Elapsed: 00:00:00.40
# Mc/sec: 1171.40
//
Query:       MMETSP1137-20121227|2695_1  [L=199]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.7e-05   21.4   0.0    4.1e-05   20.8   0.0    1.3  1  TIGR01983 UbiG: 3-demethylubiquinone-9 3-O-methyltransferase
    4.2e-05   21.3   0.0      7e-05   20.6   0.0    1.3  1  TIGR02072 BioC: biotin biosynthesis protein BioC
    8.3e-05   19.9   0.0    9.3e-05   19.8   0.0    1.2  1  TIGR02021 BchM-ChlM: magnesium protoporphyrin O-methyltransferase
    0.00069   16.8   0.0     0.0018   15.5   0.0    1.7  1  TIGR01934 MenG_MenH_UbiE: ubiquinone/menaquinone biosynthesis methyltransferase
  ------ inclusion threshold ------
      0.024   10.9   0.0      0.031   10.6   0.0    1.1  1  TIGR04074 bacter_Hen1: 3' terminal RNA ribose 2'-O-methyltransferase Hen1


Domain annotation for each model (and alignments):
>> TIGR01983  UbiG: 3-demethylubiquinone-9 3-O-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   0.0     5e-08   4.1e-05      50     129 ..      52     132 ..      15     165 .. 0.73

  Alignments for each domain:
  == domain 1    score: 20.8 bits;  conditional E-value: 5e-08
   TIGR01983  50 glkvlDvGcGgGllseslarlgae.vtgiDlseelievAklhakkdplkkieyelksveelaeee.kesfDvvlamEvlEHv 129
                 +  +l+vGcG+  ls+ +   g++ +t+ D+s+e+i++A +     +    +y ++++  l+++  +++f +v+    ++ +
  MMETSP1137-20121227|2695_1  52 SAPILEVGCGSSPLSQCMYADGWTnITACDISKEAIRAAIQRWPYAQGG-PKYVVADARSLTKSFgESQFSIVIDKGTVDAI 132
                 6789******************988**************8876665553.67888888888777547778888766555554 PP

>> TIGR02072  BioC: biotin biosynthesis protein BioC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   0.0   8.5e-08     7e-05      33     136 ..      50     165 ..      36     170 .. 0.78

  Alignments for each domain:
  == domain 1    score: 20.6 bits;  conditional E-value: 8.5e-08
   TIGR02072  33 fepakvLdiGcGtGiltrallkrfpqaelialDiseemleqakkkls....nvqficgdieklp..lekks.........fDlivSnlalQWlddlsevlaelarvlkpgGllafstfg 136
                    a +L++GcG+  l++ + +   ++ ++a Dis+e ++ a ++ +      +++ +d+++l   + +++         +D i ++ a  W  +l+ v ++la+vlk gG  ++ ++ 
  MMETSP1137-20121227|2695_1  50 PFSAPILEVGCGSSPLSQCMYADGWTN-ITACDISKEAIRAAIQRWPyaqgGPKYVVADARSLTksFGESQfsividkgtVDAIACSEA--WDYELELVARQLASVLKAGGTWLCISLT 165
                 44589*************999998888.9**************9999999966788888877642144444666666666999999998..99999999************98876665 PP

>> TIGR02021  BchM-ChlM: magnesium protoporphyrin O-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   0.0   1.1e-07   9.3e-05      54     119 ..      51     115 ..       9     155 .. 0.82

  Alignments for each domain:
  == domain 1    score: 19.8 bits;  conditional E-value: 1.1e-07
   TIGR02021  54 kGkkvlDAGCGtGllsielAkrG.aivkavDiseklvelarkraekedeaenveFevndleslegkf 119
                     +l+ GCG+  ls  + ++G  +++a Dis++ +  a +r + ++  + ++++v d +sl+  f
  MMETSP1137-20121227|2695_1  51 FSAPILEVGCGSSPLSQCMYADGwTNITACDISKEAIRAAIQRWPYAQ--GGPKYVVADARSLTKSF 115
                 556799**********98877773689*****************9998..89**********99877 PP

>> TIGR01934  MenG_MenH_UbiE: ubiquinone/menaquinone biosynthesis methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   2.2e-06    0.0018      24     110 ..      36     123 ..      26     176 .. 0.75

  Alignments for each domain:
  == domain 1    score: 15.5 bits;  conditional E-value: 2.2e-06
   TIGR01934  24 drlWkkkavkkieeekeekvlDvatGtGdlaielakkaeakvtgvDlseemLevakkkakekeeanvefieadaeeLp..fednsfdav 110
                 d   k+ +  ++++  ++ +l v +G+  l+  +     +++t++D+s+e ++ a ++ +  +    ++++ada +L   f +++f++v
  MMETSP1137-20121227|2695_1  36 DSELKELMHGTLGAPFSAPILEVGCGSSPLSQCMYADGWTNITACDISKEAIRAAIQRWPYAQ-GGPKYVVADARSLTksFGESQFSIV 123
                 55555666666666677889**********988888777*******************98764.6789********9766888888876 PP

>> TIGR04074  bacter_Hen1: 3' terminal RNA ribose 2'-O-methyltransferase Hen1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   3.8e-05     0.031     276     329 ..      45      97 ..       8     104 .. 0.79

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 3.8e-05
   TIGR04074 276 aalresgarsvlDlGcGegkLlkaLlaekqfekivgvdvsareLekakrrlkld 329
                  +l +  +  +l++GcG++ L + + a+   ++i+++d+s +++++a +r  + 
  MMETSP1137-20121227|2695_1  45 GTLGAPFSAPILEVGCGSSPLSQCMYAD-GWTNITACDISKEAIRAAIQRWPYA 97 
                 55566666789********998776665.7899**************9997665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (199 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       109  (0.0265724); expected 82.0 (0.02)
Passed bias filter:                      109  (0.0265724); expected 82.0 (0.02)
Passed Vit filter:                        18  (0.0043881); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.22u 0.16s 00:00:00.38 Elapsed: 00:00:00.37
# Mc/sec: 709.89
//
Query:       MMETSP1137-20121227|2696_1  [L=302]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (302 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       122  (0.0297416); expected 82.0 (0.02)
Passed bias filter:                       99  (0.0241346); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.16s 00:00:00.41 Elapsed: 00:00:00.32
# Mc/sec: 1245.65
//
Query:       MMETSP1137-20121227|2697_1  [L=457]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (457 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        60  (0.014627); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.12s 00:00:00.43 Elapsed: 00:00:00.43
# Mc/sec: 1402.77
//
Query:       MMETSP1137-20121227|2698_1  [L=136]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0036   13.8   3.5     0.0042   13.6   2.4    1.0  1  TIGR00792 gph: sugar (Glycoside-Pentoside-Hexuronide) transporter
  ------ inclusion threshold ------
       0.55    8.5   6.0        1.8    6.9   3.4    1.9  2  TIGR04104 cxxc_20_cxxc: cxxc_20_cxxc protein


Domain annotation for each model (and alignments):
>> TIGR00792  gph: sugar (Glycoside-Pentoside-Hexuronide) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   2.4   2.1e-06    0.0042      80     163 ..       4      88 ..       1      99 [. 0.81

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 2.1e-06
   TIGR00792  80 ssvvlvllFttldfsataklvyayitY.illgllYslvdipywslvpaltkdsreReklatlrrflatlglllvavlvlplvslf 163
                 + v+++l F++ +f  ++++++  ++Y +++ +lYs++  ++ + +++  ++ +   + a+++  +at++ +++av++   v++ 
  MMETSP1137-20121227|2698_1   4 VFVLMILFFSEEEFGYAVYTIWLLALYaVIVVFLYSFAQKAFKAKAAVRNASRQTLGASASVPVAVATATPTVIAVATPVCVAIP 88 
                 56899**********************4456678**********99998888888888999999999999998888765555543 PP

>> TIGR04104  cxxc_20_cxxc: cxxc_20_cxxc protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   3.4   0.00087       1.8      53      92 ..       4      42 ..       1      43 [. 0.80
   2 ?    0.7   0.0     0.075   1.5e+02      34      69 ..      48      84 ..      44      89 .. 0.65

  Alignments for each domain:
  == domain 1    score: 6.9 bits;  conditional E-value: 0.00087
   TIGR04104 53 lllllallllelsiililllyiillllivlltpfllklkk 92
                +++l++l  ++ +   + +++i ll+l+++++ fl+ + +
  MMETSP1137-20121227|2698_1  4 VFVLMIL-FFSEEEFGYAVYTIWLLALYAVIVVFLYSFAQ 42
                4455555.68899999*******************99976 PP

  == domain 2    score: 0.7 bits;  conditional E-value: 0.075
   TIGR04104 34 kqyltaksrkksvlllliplllllall.llelsiili 69
                k  + + sr+    ++ +p+ +++a+  ++ + +++ 
  MMETSP1137-20121227|2698_1 48 KAAVRNASRQTLGASASVPVAVATATPtVIAVATPVC 84
                5566677777777777888888877765555555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (136 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       242  (0.0589956); expected 82.0 (0.02)
Passed bias filter:                      137  (0.0333983); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.18u 0.16s 00:00:00.34 Elapsed: 00:00:00.36
# Mc/sec: 498.63
//
Query:       MMETSP1137-20121227|2699_1  [L=627]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.2e-50  168.0   0.2    5.9e-49  164.5   0.1    2.1  1  TIGR03182 PDH_E1_alph_y: pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit
    7.8e-22   75.4   0.1    6.2e-21   72.5   0.1    2.0  1  TIGR03181 PDH_E1_alph_x: pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit
    3.2e-15   53.5   1.6    5.1e-12   42.9   0.0    3.6  4  TIGR00204 dxs: 1-deoxy-D-xylulose-5-phosphate synthase
     0.0024   14.3   0.0     0.0037   13.7   0.0    1.2  1  TIGR03710 OAFO_sf: 2-oxoacid:acceptor oxidoreductase, alpha subunit


Domain annotation for each model (and alignments):
>> TIGR03182  PDH_E1_alph_y: pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  164.5   0.1   5.7e-52   5.9e-49      58     309 ..       3     241 ..       1     246 [. 0.91

  Alignments for each domain:
  == domain 1    score: 164.5 bits;  conditional E-value: 5.7e-52
   TIGR03182  58 itsYRdHghalaagveakevmaEllgketGvskGkGGsmHlfdkekkflGGhgivgaqvplatGlafaekykkedevtlaffGdgavnqGqvyEslnlaalwklPvifviennkyamGtaverssaekdlakkgesfgikglevdGmdvlavreaakeavervragkgPvllelktyRfrgHslsDpakyRskeeveevk..krdpieklkkaliekgllseeelkeiekevkaeveeavefaeespepdveeL 309
                 ++ YR+H+hala gv+ +++maEl+ k++G+++G GGsmH++dke++f G   i+ +++    G        ++d+++++f+G+g +++G + E+ln aa  +lP++f++ +n  a+ t +   ++++d+  +g+ +g++g++vdG ++ +  ++ + +v++vr+ kgP++l+++tyRf+gHs +Dp++ R ++  + ++  + dpi+ +++   ++gl    +l +  k+vka+v+++ +fa++s  p+ +eL
  MMETSP1137-20121227|2699_1   3 FSYYREHTHALASGVSGDAIMAELFAKDSGTCRGTGGSMHIYDKETNFQG---ILLDRLLDPEG------TLGDDRISVVFIGEGGAQNGRMAETLNAAAKENLPLLFLVIDNGRAINTFTPDVATNNDVFLQGQHYGVPGIKVDGGNLKDTLRTGRAVVDYVRT-KGPAILQVHTYRFQGHSPADPEHERGRKAEKMWAraEADPIKIFEASDDAAGL----DLASATKNVKASVKQSLDFAKNSVPPP-REL 241
                 688*********************************************75...88777765555......4699*****************************************************************************************95.79********************9998777666655799****99987666666....89999****************997665.445 PP

>> TIGR03181  PDH_E1_alph_x: pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.5   0.1     6e-24   6.2e-21      79     305 ..       3     229 ..       2     243 .. 0.80

  Alignments for each domain:
  == domain 1    score: 72.5 bits;  conditional E-value: 6e-24
   TIGR03181  79 vpsYRdaaallarGvkleeillywrgdekgsklpeevnilpinvpigtqvlhAaGvAlalklkgekevavayiGdGgtsegdfyealnfAavfkapvvfvvqNNqwAISvprskqtaaktlaqkavaagipgvqvDGnDvlAvyevvkealekArkgegPtLiEavtYRlgaHttaDdp.trYrskeeeeewkkkdPiarlrkyLeekglldeekeeeleeeaeeevk 305
                 +++YR+++ +la Gv+   i++ + ++ +g+   ++ +++ +      q +    +     + g+++++v++iG+Gg+ +g + e ln Aa  ++p+ f+v  N+ AI + +      +++  ++  +g+pg++vDG  +   +++ ++ +++ r+ +gP ++ + tYR++ H+ aD   +r r++e++ + ++ dPi+ +++   ++gl   + ++++++ ++++ +
  MMETSP1137-20121227|2699_1   3 FSYYREHTHALASGVSGDAIMAELFAKDSGTCRGTGGSMHIYDKETNFQGILLDRLLDPEGTLGDDRISVVFIGEGGAQNGRMAETLNAAAKENLPLLFLVIDNGRAINTFTPDVATNNDVFLQGQHYGVPGIKVDGGNLKDTLRTGRAVVDYVRT-KGPAILQVHTYRFQGHSPADPEhERGRKAEKMWARAEADPIKIFEASDDAAGLDLASATKNVKASVKQSLD 229
                 678888888888888877777666666666655555444444443333333333333334456789***********************************************999999***************************9999999986.78*****************8443666777776677789*******99999998777777777777776655 PP

>> TIGR00204  dxs: 1-deoxy-D-xylulose-5-phosphate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.5   0.1     0.001       1.1     131     177 ..      66     112 ..      62     131 .. 0.88
   2 ?   -0.4   0.0     0.066        68     245     285 ..     137     180 ..     127     189 .. 0.77
   3 ?    0.7   0.0      0.03        31     352     385 ..     342     375 ..     284     378 .. 0.78
   4 !   42.9   0.0     5e-15   5.1e-12     491     595 ..     498     605 ..     467     616 .. 0.88

  Alignments for each domain:
  == domain 1    score: 5.5 bits;  conditional E-value: 0.001
   TIGR00204 131 gadekvvaviGdGaltaGmalealnhaGdlkkdllvilndnemsise 177
                 g+d+  v  iG+G    G + e+ln a +++ +ll ++ dn  +i +
  MMETSP1137-20121227|2699_1  66 GDDRISVVFIGEGGAQNGRMAETLNAAAKENLPLLFLVIDNGRAINT 112
                 56788999*********************************988865 PP

  == domain 2    score: -0.4 bits;  conditional E-value: 0.066
   TIGR00204 245 vdGhdlselietlkna...kklkgPvllhvktkkGkGyklaekd 285
                 vdG +l++ + t + +     +kgP +l v+t + +G+++a+ +
  MMETSP1137-20121227|2699_1 137 VDGGNLKDTLRTGRAVvdyVRTKGPAILQVHTYRFQGHSPADPE 180
                 6777777777665544111458******************9865 PP

  == domain 3    score: 0.7 bits;  conditional E-value: 0.03
   TIGR00204 352 kryfdvaiaeqhavtlaaalaieGlkPvvaiyst 385
                  r  d  i e h +  a +  ++G++P+v +  t
  MMETSP1137-20121227|2699_1 342 LRAADEIIDEGHFIGKALGEGMNGYRPIVELMNT 375
                 37788999*********************98776 PP

  == domain 4    score: 42.9 bits;  conditional E-value: 5e-15
   TIGR00204 491 lrkgedilllgfGtlveealevaeelkekgieatvvdlrfvkPldeelikalakeieklvtleenvllGGvgsavaevlsdqn...vlvpvkrlgipdefiehgtqee 595
                 + + + + +l++   v+ea+ v +e++ +g+++ +++lr +kPld + i++ +++++k+ +l+e++  GGvg++v  ++s+q       pv+rl + d  ++ +++ e
  MMETSP1137-20121227|2699_1 498 VSSRKAVTVLTYLHGVKEAHSVLDEIRAEGMDIDLIELRSLKPLDMDTIRESLQRTNKVAILDESTNSGGVGATVSALISEQCfdlLDAPVRRLCMDDAPVPYASSME 605
                 45667899*************************************************************************98555678*********9999887654 PP

>> TIGR03710  OAFO_sf: 2-oxoacid:acceptor oxidoreductase, alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   0.0   3.6e-06    0.0037     462     523 ..     500     562 ..     485     577 .. 0.87

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 3.6e-06
   TIGR03710 462 edadvlvigwGstkgaikeaverlreeglkvallhlrllnPlpke.laellekakkvvvvEqN 523
                 +++ v+v+++    + ++++++++r+eg++++l++lr l Pl  + ++e l++ +kv + +++
  MMETSP1137-20121227|2699_1 500 SRKAVTVLTYLHGVKEAHSVLDEIRAEGMDIDLIELRSLKPLDMDtIRESLQRTNKVAILDES 562
                 567788999999999999***************************************988766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (627 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       109  (0.0265724); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.52u 0.11s 00:00:00.63 Elapsed: 00:00:00.63
# Mc/sec: 1313.61
//
Query:       MMETSP1137-20121227|2700_1  [L=344]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (344 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       102  (0.0248659); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.15s 00:00:00.40 Elapsed: 00:00:00.40
# Mc/sec: 1135.11
//
Query:       MMETSP1137-20121227|2701_1  [L=165]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (165 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       123  (0.0299854); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.16s 00:00:00.33 Elapsed: 00:00:00.27
# Mc/sec: 806.60
//
Query:       MMETSP1137-20121227|2702_1  [L=256]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (256 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       114  (0.0277913); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.12s 00:00:00.39 Elapsed: 00:00:00.39
# Mc/sec: 866.39
//
Query:       MMETSP1137-20121227|2703_1  [L=127]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (127 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        69  (0.0168211); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.14s 00:00:00.29 Elapsed: 00:00:00.30
# Mc/sec: 558.75
//
Query:       MMETSP1137-20121227|2704_1  [L=1125]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   9.3e-218  722.1   0.1   1.2e-217  721.7   0.1    1.1  1  TIGR03670 rpoB_arch: DNA-directed RNA polymerase subunit B
    1.5e-83  279.0   0.1    7.4e-49  164.1   0.0    6.3  5  TIGR02013 rpoB: DNA-directed RNA polymerase, beta subunit


Domain annotation for each model (and alignments):
>> TIGR03670  rpoB_arch: DNA-directed RNA polymerase subunit B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  721.7   0.1  5.8e-221  1.2e-217       1     551 [.     562    1124 ..     562    1125 .] 0.96

  Alignments for each domain:
  == domain 1    score: 721.7 bits;  conditional E-value: 5.8e-221
   TIGR03670    1 vylnGkliGtvedpeelvekvrelrregklseevnvaykeetnevyintdaGrirrPllvvenGkpklteehveklkkg...eltfedlvkeGvieyldaeeeenayialseee.....lteehthleidpsailGivaslipyaehnssprntmeaamakqslGlyaanyklrldtrahllhypqvplvktrvlelieyderPagqnlvvavlsyeGyniedalvlnkasierglarsvffrtyeaeerr.ypgG..qedkfeiPeke.vrgyrseeaykkldedGivapeaevkgkdvligktsPPrfl.eeleelglaaekrrdssvtvrsgekGivdkvllteseegsklvkvrvrderipelGdkfasrhGqkGviGlivpqedmPfteeGivPdlilnPhalPsrmtvgqlleaiagkvaalegrrvdatafeeekeeelrkelkklGfkedgkevlydgitGekleaeifiGvvyyqklhhlvadklharsrGpvqvltrqPteGrareGGlrfGemerdvlvghGaalllkerlldesdkvvvlvcekcGeiaild 551 
                  v++nG+ +G ++dp++lv+++relrr  ++s ev+v  + +++e+ +++d Gr  rP+++ve+ k  ++++h+e+l+++   e+t+   + +G+iey+d+eeee ++ia++ ++     +   +th+ei+ps+ilGi+as+ip+++hn+sprnt+++am kq++G+y +ny+lr+dt ah+l+ypq+pl  tr++  +++ e P+g n+ va+ +y+Gyn ed++++n++si+rg+ rsvf+r+y++ee++ + gG  q+++fe P++e v+g+r    y+kld+dG+vap ++++g+d++igkt+P     eel + ++a  +rrd+s+ +rs+e G+vd+vllt+++eg+k vkvrvr+ rip++GdkfasrhGqkG iG++ +qedmPf+ eGi Pd+i+nPha+Psrmt+g+l+e + +kv++l+g + dat+f+   ++e+ k l + G+++ g ev+y+g tG++lea+if+G  yyq+l+h+v dk+h+r+rGpv +ltrqP eGrar+GGlrfGemerd++++hG a +lker ++ sd+  v vc+ cG+iai +
  MMETSP1137-20121227|2704_1  562 VFVNGTWVGIHHDPDKLVRTLRELRRGVEISAEVSVVRDIQNRELRLFSDPGRCCRPIFIVEDQKLLIKKHHIEQLRNKastEFTWAKCIANGLIEYIDTEEEETTMIAMNLNDlspdnTMYRYTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNYQLRMDTLAHVLYYPQKPLGSTRAMTYLHFRELPSGINATVAIACYSGYNQEDSVIMNQSSIDRGFFRSVFYRSYKDEEKKtFHGGneQTERFERPQREtVQGMRKC-DYSKLDDDGLVAPGTRISGDDIIIGKTAPIEPKpEELMDATQARYQRRDASTPLRSSEAGYVDQVLLTTNQEGRKFVKVRVRSVRIPQIGDKFASRHGQKGTIGITYRQEDMPFSCEGISPDIIVNPHAIPSRMTIGHLVECLLSKVSSLTGDEGDATPFTAVTVDEISKLLANFGYQKRGFEVMYNGHTGRRLEASIFLGPTYYQRLKHMVDDKIHSRARGPVTLLTRQPMEGRARDGGLRFGEMERDCMISHGVASILKERTMEASDAFRVHVCDICGMIAIAN 1124
                  8***************************************************************************97533489***************************9994444344569**************************************************************************************************************************9997647888444589****87648888865.59***************************55431677778899************************************************************************************************************************************************************************************************************************************************976 PP

>> TIGR02013  rpoB: DNA-directed RNA polymerase, beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.1   2.2e-07   0.00045      15     130 ..      26     159 ..      13     286 .. 0.81
   2 !   40.3   0.0   8.3e-15   1.7e-11     381     534 ..     362     527 ..     331     537 .. 0.79
   3 !    9.6   0.0   1.5e-05     0.032     588     646 ..     668     726 ..     621     734 .. 0.80
   4 !   38.0   0.0   4.3e-14   8.8e-11     748     883 ..     763     900 ..     757     913 .. 0.76
   5 !  164.1   0.0   3.6e-52   7.4e-49     998    1189 ..     913    1101 ..     907    1112 .. 0.94

  Alignments for each domain:
  == domain 1    score: 15.8 bits;  conditional E-value: 2.2e-07
   TIGR02013  15 lelPnllevqlksyekflqkdteaekrkeeGleevfk.eifPi..edssgkleLeylsyeleepky.sve.........eckergltysvplkvk.lrlilke.eegvkeikeq...dvylgeiPlmtdkgtfi 130
                 ++   l++ ql+s+++f+ + +++   +   le v + +  P+  +    ++ +++ +  l +p   + +         e+  r+lty++pl++  +rl+ +   +g +ei+e+   +v+lg++P+m  ++  i
  MMETSP1137-20121227|2704_1  26 FDEKGLVRQQLDSFDEFIMNTMQEIVDESPRLELVPQqQHNPMmpQGADVSYAIQFGQIYLSKPTWiEPDqttsamfpnEARLRNLTYAAPLYMDlVRLTKTVmADGEEEIEEEalpKVFLGSVPIMLRSTYCI 159
                 566679999**********998888888888998865145677223445567789999888877532111233355666*************99735777655544556666653338*********7654443 PP

  == domain 2    score: 40.3 bits;  conditional E-value: 8.3e-15
   TIGR02013 381 vikyliklkngkaevDDiDhlgnrrvrsvGellenqlrvglarmervvre..rlsvkdtdtltPqdlinakpvvaaikeffgssq..............LsqfmDqtnPlaelthkrrlsaLGpGGLtreraGfevrDvhpthYGriCPietPeGpniGLinslstyakv 534
                 +++ l+  + g  + DD Dh + +r+   G ll + +r  + ++ + v+   +  +   + + P   +  +++++ +k   ++++              +sq +++    + l h rrl+      + re    + r +h+th+G +CP etPeG+ +GL++ l+  a +
  MMETSP1137-20121227|2704_1 362 IVHKLLMSSIGARRPDDRDHYAQKRLDLAGPLLGQLFRQLFRKLSKDVQKygQKCIDKGQEFSPVAAVRHQTISSGLKYALATGNwgqqksapgsvragVSQVLNRLTFASTLSHLRRLNT----PIGREGKLAKPRQLHNTHWGMVCPAETPEGQAVGLVKNLALMAYI 527
                 455666667778889*********************************8632344556699***************998887653111223333333337888888888999999999986....2445655667899**************************998877 PP

  == domain 3    score: 9.6 bits;  conditional E-value: 1.5e-05
   TIGR02013 588 lvearvkgevtlvekeevdymdvspkqvvsvaaaliPfLehDDanraLmGsnmqrqavP 646
                 ++ +  ++ +  ++  + ++ ++ p++++++ a++iPf +h+ + r    s m +qa+ 
  MMETSP1137-20121227|2704_1 668 MIAMNLNDLSPDNTMYRYTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMG 726
                 5555555555566667788999**********************************976 PP

  == domain 4    score: 38.0 bits;  conditional E-value: 4.3e-14
   TIGR02013 748 elaLGknvlvafmpWeGynyeDailiserlvkdDvftsihieefeveardtklGeeeitrdipnvseeal........rnLdeeGivriGaevkagdiLvGkvtPkgeseltpeekLLraifGekardvrdaslrvpegveGvv 883
                 el  G n  va   ++Gyn eD++++++  +   +f s++ + ++ e ++t +G +e t+     + e++        ++Ld++G+v+ G++++  di++Gk++P   +e+ pee L+ a       + rdas  + ++++G v
  MMETSP1137-20121227|2704_1 763 ELPSGINATVAIACYSGYNQEDSVIMNQSSIDRGFFRSVFYRSYKDEEKKTFHGGNEQTERFERPQRETVqgmrkcdySKLDDDGLVAPGTRISGDDIIIGKTAP---IEPKPEE-LMDATQ--ARYQRRDASTPLRSSEAGYV 900
                 788899***********************************************999888766544443331111112279***********************99...5666765.555532..22344555655555555555 PP

  == domain 5    score: 164.1 bits;  conditional E-value: 3.6e-52
   TIGR02013  998 klvkvyvaqkrkiqvGDkmaGrhGnkGvvskilpieDmPfledGtpvdivLnPLgvPsrmniGqvlelhlglaakklgekgvkiatpvfdgaseeevkellekaglprdgkvklyDGrtGekfdekvtvGviYmlkLahlvddklharsiGpYslvtqqPlGGkaqfGGqrfGemevWaLeayGaayiLqel 1189
                  k vkv v + r  q GDk+a rhG kG ++   ++eDmPf  +G   di++nP ++Psrm iG ++e+ l+ +++ +g    + ++  f +++ +e+++ll + g+++ g  ++y+G+tG +++  +  G +Y  +L+h+vddk+h+r+ Gp  l+t+qP+ G+a+ GG rfGeme   + ++G+a iL+e 
  MMETSP1137-20121227|2704_1  913 KFVKVRVRSVRIPQIGDKFASRHGQKGTIGITYRQEDMPFSCEGISPDIIVNPHAIPSRMTIGHLVECLLSKVSSLTG---DEGDATPFTAVTVDEISKLLANFGYQKRGFEVMYNGHTGRRLEASIFLGPTYYQRLKHMVDDKIHSRARGPVTLLTRQPMEGRARDGGLRFGEMERDCMISHGVASILKER 1101
                  789********************************************************************9999666...45555569*****************************************************************************************************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1125 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        76  (0.0185275); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.80u 0.19s 00:00:00.99 Elapsed: 00:00:00.82
# Mc/sec: 1810.83
//
Query:       MMETSP1137-20121227|2705_1  [L=267]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.5e-26   91.3   0.0      8e-13   46.0   0.0    2.4  3  TIGR01622 SF-CC1: splicing factor, CC1-like family
    1.1e-18   65.5   0.0    6.9e-10   36.5   0.0    2.0  2  TIGR01628 PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family
    9.8e-13   46.2   0.0    1.9e-06   25.5   0.0    2.1  2  TIGR01661 ELAV_HUD_SF: ELAV/HuD family splicing factor
    2.9e-12   43.7   0.0    6.5e-07   26.0   0.0    2.5  3  TIGR01642 U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor
    2.3e-08   31.9   0.0     0.0056   14.2   0.0    2.9  3  TIGR01659 sex-lethal: sex-lethal family splicing factor
      3e-06   24.3   0.0    1.3e-05   22.2   0.0    1.7  1  TIGR01649 hnRNP-L_PTB: hnRNP-L/PTB/hephaestus splicing factor family
    0.00028   17.6   0.0      0.082    9.5   0.0    2.4  3  TIGR01648 hnRNP-R-Q: hnRNP-R, Q splicing factor family
    0.00069   16.3   0.0     0.0011   15.6   0.0    1.4  1  TIGR01645 half-pint: poly-U binding splicing factor, half-pint family


Domain annotation for each model (and alignments):
>> TIGR01622  SF-CC1: splicing factor, CC1-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.0   0.0   1.6e-15     8e-13     212     292 ..      21     102 ..       4     122 .. 0.80
   2 ?   -0.2   0.1      0.16        84      27      47 ..     111     129 ..     102     150 .. 0.44
   3 !   42.7   0.0   1.6e-14   8.1e-12     203     298 ..     139     228 ..     132     247 .. 0.80

  Alignments for each domain:
  == domain 1    score: 46.0 bits;  conditional E-value: 1.6e-15
   TIGR01622 212 dipnsi..adlkLYvGnlhfnitEqeLrqiFepFGeielvqlqkDpetGrskGyGFiqFsdaeeakeAleklNGlelAGReik 292
                    +si    + LYvGnl  + t ++Lr++    Gei + ++q+ p++ rskG+G ++F d   a  A+ k N  +l GR+i 
  MMETSP1137-20121227|2705_1  21 GSETSIelMSKCLYVGNLSWEATSDDLRELLVXTGEIVSAEVQHHPDG-RSKGWGLVEFADEAGAASAIAKYNDHDLLGRKIF 102
                 222333113567**********************************98.*******************************985 PP

  == domain 2    score: -0.2 bits;  conditional E-value: 0.16
   TIGR01622  27 rersRdrsrdRersrskerdr 47 
                   + R  sr R r+r +   r
  MMETSP1137-20121227|2705_1 111 DAGARAESRGRGRGRTR--GR 129
                 33333333333333333..22 PP

  == domain 3    score: 42.7 bits;  conditional E-value: 1.6e-14
   TIGR01622 203 akaatelsgdipnsiadlkLYvGnlhfnitEqeLrqiFepFG.eielvqlqkDpetGrskGyGFiqFsdaeeakeAleklNGlelAGReikvglasD 298
                 a  a++++    ++++ + LYvGnl  +    +L+++F  +  +  +v+l  D   Grs+GyG ++F   e a +Al +lNG e+ GR i v +  D
  MMETSP1137-20121227|2705_1 139 AD-AKTTQEPPAEAVPGTTLYVGNLPWSTKWADLKDLFVEYNvKFADVKLGFD---GRSRGYGIVRFDTEEDAAAAL-VLNGSEVEGRSIVVRY--D 228
                 44.45555445568999*********************888425566666665...6**********9999998887.7***********9988..4 PP

>> TIGR01628  PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.5   0.0   1.3e-12   6.9e-10     284     354 ..      29      99 ..       7     114 .. 0.81
   2 !   27.2   0.0   8.9e-10   4.6e-07      89     161 ..     155     225 ..     136     238 .. 0.81

  Alignments for each domain:
  == domain 1    score: 36.5 bits;  conditional E-value: 1.3e-12
   TIGR01628 284 qgvNlYvkNlddtvddekLrelFeefGeitSakvmldekekSkgFGFVcfssqeeAnkAvtelhgkilngk 354
                   + lYv Nl  + ++ +Lrel    Gei+Sa v   + ++Skg+G V f+++  A  A+ + + + l g+
  MMETSP1137-20121227|2705_1  29 MSKCLYVGNLSWEATSDDLRELLVXTGEIVSAEVQHHPDGRSKGWGLVEFADEAGAASAIAKYNDHDLLGR 99 
                 45679999999999999999999999999999999999999999999999999999999999887544444 PP

  == domain 2    score: 27.2 bits;  conditional E-value: 8.9e-10
   TIGR01628  89 gNifvKnLdksidnkaLfdtFskfGnilsckvatdeeGkSkgYgfvhfedeesAkeAieklNgvllndkevyv 161
                 + ++v nL+ s   + L+d+F ++ n+    v    +G+S+gYg v+f++ee A +A+  lNg  ++ + ++v
  MMETSP1137-20121227|2705_1 155 TTLYVGNLPWSTKWADLKDLFVEY-NVKFADVKLGFDGRSRGYGIVRFDTEEDAAAALV-LNGSEVEGRSIVV 225
                 457899999999999999999999.6777788888899999999999999999998885.8999888888776 PP

>> TIGR01661  ELAV_HUD_SF: ELAV/HuD family splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.0   4.2e-07   0.00021       6     335 ..      33      96 ..       2     111 .. 0.55
   2 !   25.5   0.0   3.7e-09   1.9e-06      81     169 ..     146     229 ..     141     261 .. 0.82

  Alignments for each domain:
  == domain 1    score: 18.8 bits;  conditional E-value: 4.2e-07
   TIGR01661   6 livnylPqtmtqeeirslftsiGeiescklvrdkvtGqslGyGfvnyvreedaekavnslnGlrlqnktikvsyarPssdsikganlyvsGlPktmtqkeleslfspfGkiitsrilsdnvtdlskGvGfirfdkreeadraikalnGttPsgatepitvkfannPsssnskallsdleavlnaqltrvprstiltaaaiaplhkaaakfrlsaldflavlakrlqqhavaqqaaaqrasplaadgavaglaagaqiaasdgagycifvynlspdtdeavlqlfgpfGavqsvkiirdlttnkckGygfvsmtnydeaalailslnGytl 335
                 l v  l  + t +++r l++  Gei s+  v+    G+s G+G+v++ +e  a  a++ +n                                                                                                                                                                                                                                                                            l
  MMETSP1137-20121227|2705_1  33 LYVGNLSWEATSDDLRELLVXTGEIVSAE-VQHHPDGRSKGWGLVEFADEAGAASAIAKYN-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------DHDL 96 
                 23333444445555555555555555544.3444555555555555555555555555554.........................................................................................................................................................................................................................................................................4443 PP

  == domain 2    score: 25.5 bits;  conditional E-value: 3.7e-09
   TIGR01661  81 rPssdsikganlyvsGlPktmtqkeleslfspfGkiitsrilsdnvtdlskGvGfirfdkreeadraikalnGttPsgatepitvkfan 169
                  P ++++ g+ lyv  lP +    +l  lf ++    +   l     + s+G G +rfd  e+a  a+  lnG+  +g    i+v++  
  MMETSP1137-20121227|2705_1 146 EPPAEAVPGTTLYVGNLPWSTKWADLKDLFVEYNVKFADVKL--GFDGRSRGYGIVRFDTEEDAAAAL-VLNGSEVEGR--SIVVRYDR 229
                 588899***************************977766555..56789***********99998776.69**998875..47777754 PP

>> TIGR01642  U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.0   0.0   1.3e-09   6.5e-07     284     368 ..      17     101 ..       2     109 .. 0.85
   2 ?   -2.0   0.5       0.4   2.1e+02       7      29 ..     107     129 ..     101     146 .. 0.46
   3 !   14.9   0.0   3.1e-06    0.0016     298     377 ..     156     232 ..     150     245 .. 0.88

  Alignments for each domain:
  == domain 1    score: 26.0 bits;  conditional E-value: 1.3e-09
   TIGR01642 284 eklvnsktvldsedk.lyignLPldlkddqvkeLLesFGdLkaFnliKdlatGlsKGyaFceykdssvtdlAiaaLnGiklgdkkL 368
                 e + +s+t+ +   k ly+gnL  + + d ++eLL   G++ + + ++   +G sKG++ +e+ d   +  Aia  n  +l ++k+
  MMETSP1137-20121227|2705_1  17 EASRGSETSIELMSKcLYVGNLSWEATSDDLRELLVXTGEIVSAE-VQHHPDGRSKGWGLVEFADEAGAASAIAKYNDHDLLGRKI 101
                 44567888888766559**************************88.7999*************************99998877765 PP

  == domain 2    score: -2.0 bits;  conditional E-value: 0.4
   TIGR01642   7 rerEksrerdrdkskeRsRkRsr 29 
                 re  +   r + + + R R R r
  MMETSP1137-20121227|2705_1 107 RETGDAGARAESRGRGRGRTRGR 129
                 33333333333333333333333 PP

  == domain 3    score: 14.9 bits;  conditional E-value: 3.1e-06
   TIGR01642 298 klyignLPldlkddqvkeLLesFGdLkaFnliKdlatGlsKGyaFceykdssvtdlAiaaLnGiklgdkkLnvkrAtvga 377
                  ly+gnLP   k   +k+L  ++     F  +K   +G s+Gy+ + ++   ++  A+  LnG ++ ++ + v+   +g 
  MMETSP1137-20121227|2705_1 156 TLYVGNLPWSTKWADLKDLFVEYN--VKFADVKLGFDGRSRGYGIVRFDTEEDAAAAL-VLNGSEVEGRSIVVRYDRQGP 232
                 59******************9996..46999*****************9999987665.7*********99999877765 PP

>> TIGR01659  sex-lethal: sex-lethal family splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.5   0.0   0.00014     0.073     193     256 ..      30      92 ..      18      95 .. 0.87
   2 ?    3.0   0.0     0.028        14     186     218 ..     147     179 ..     141     186 .. 0.88
   3 !   14.2   0.0   1.1e-05    0.0056     146     203 ..     191     247 ..     181     252 .. 0.86

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 0.00014
   TIGR01659 193 dtnlyvtnlprtitddqldtifgkygsivqknilrdkltgkprgvafvrfnkreeaqeaisaln 256
                    lyv nl+   t d+l  ++   g+iv  ++   +  g+ +g  +v f     a  ai+  n
  MMETSP1137-20121227|2705_1  30 SKCLYVGNLSWEATSDDLRELLVXTGEIVSAEVQ-HHPDGRSKGWGLVEFADEAGAASAIAKYN 92 
                 5679*************************99975.6678************9999999998877 PP

  == domain 2    score: 3.0 bits;  conditional E-value: 0.028
   TIGR01659 186 pggesikdtnlyvtnlprtitddqldtifgkyg 218
                 p  e +  t lyv nlp +    +l+ +f  y 
  MMETSP1137-20121227|2705_1 147 PPAEAVPGTTLYVGNLPWSTKWADLKDLFVEYN 179
                 7789999************99999999998885 PP

  == domain 3    score: 14.2 bits;  conditional E-value: 1.1e-05
   TIGR01659 146 gysfgyafvdfaseadsqraikslngitvrnkrlkvsyarpggesikdtnlyvtnlpr 203
                 g s gy++v f +e d+  a+ +lng  v  + + v y r g  +  +  l + n  r
  MMETSP1137-20121227|2705_1 191 GRSRGYGIVRFDTEEDAAAAL-VLNGSEVEGRSIVVRYDRQGPAEAEEPPLEIRNYQR 247
                 6799*************9776.8*******************9888888887777766 PP

>> TIGR01649  hnRNP-L_PTB: hnRNP-L/PTB/hephaestus splicing factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.2   0.0   2.5e-08   1.3e-05     296     471 ..      28     212 ..       4     226 .. 0.76

  Alignments for each domain:
  == domain 1    score: 22.2 bits;  conditional E-value: 2.5e-08
   TIGR01649 296 glgsVllvsnLeeekvtpdalFnlfgvYGdvervkilkn....kketalvemadpqqaqlalthLdkvklfgkklrvavSkqeavqlpkefqlddGltkDyses.rlhRFkkpgsknknn...iypPsatLHlsNiPlsvsEedlkelfaekgvkvkafkv.Fpkd.skmallelesveeAveaLi 471
                  +++ l v nL  e  t+d l  l+   G++   ++ +      k+ +lve+ad+  a  a+   +++ l g+k+ +   +++    ++      G  +  ++  +  R + ++ k+ ++      P +tL   N+P s +  dlk+lf e +vk+  +k+ F+ + +  +++ +++ e+A  aL+
  MMETSP1137-20121227|2705_1  28 LMSKCLYVGNLSWE-ATSDDLRELLVXTGEIVSAEVQHHpdgrSKGWGLVEFADEAGAASAIAKYNDHDLLGRKIFLREDRETGDAGARAESRGRGRGRTRGRGlPAARGRGADAKTTQEppaEAVPGTTLYVGNLPWSTKWADLKDLFVEYNVKFADVKLgFDGRsRGYGIVRFDTEEDAAAALV 212
                 44556667777654.577777788888888777666653222257889*******************************9999888888777666666555543267777777777777522257899********************************9899997889*************997 PP

>> TIGR01648  hnRNP-R-Q: hnRNP-R, Q splicing factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.6   0.0    0.0025       1.3      61     124 ..      33      96 ..      24     102 .. 0.90
   2 ?   -2.7   0.1      0.77     4e+02     369     390 ..     119     138 ..     112     150 .. 0.51
   3 !    9.5   0.0   0.00016     0.082     236     301 ..     157     225 ..     141     234 .. 0.69

  Alignments for each domain:
  == domain 1    score: 5.6 bits;  conditional E-value: 0.0025
   TIGR01648  61 vfvGkiPrdlyedelvPlfekvGkiyelrlmmdldGknrGyafvtfcnkeeakeavkelnnyei 124
                 ++vG +  +   d+l  l+   G+i    +    dG+ +G+ +v f++   a  a+ + n++++
  MMETSP1137-20121227|2705_1  33 LYVGNLSWEATSDDLRELLVXTGEIVSAEVQHHPDGRSKGWGLVEFADEAGAASAIAKYNDHDL 96 
                 689999999999999999999******999999***********************99998765 PP

  == domain 2    score: -2.7 bits;  conditional E-value: 0.77
   TIGR01648 369 rgrgrgaagsraaGvrGlglrG 390
                 rgrgrg++  r  G     +rG
  MMETSP1137-20121227|2705_1 119 RGRGRGRTRGR--GLPAARGRG 138
                 44444444333..322222233 PP

  == domain 3    score: 9.5 bits;  conditional E-value: 0.00016
   TIGR01648 236 lyvrnlmletteeiieksfsefkpGavervk.....kirdyafvhfedredavkamdelnGkeleGseiev 301
                 lyv nl  +t    ++  f e++  +   vk     + r y  v f+  eda  a+  lnG e+eG +i v
  MMETSP1137-20121227|2705_1 157 LYVGNLPWSTKWADLKDLFVEYNV-KFADVKlgfdgRSRGYGIVRFDTEEDAAAAL-VLNGSEVEGRSIVV 225
                 666666666666666666666532.3333432222256788888888888888776.58888888888766 PP

>> TIGR01645  half-pint: poly-U binding splicing factor, half-pint family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   2.1e-06    0.0011     213     270 ..      43      99 ..       4     115 .. 0.90

  Alignments for each domain:
  == domain 1    score: 15.6 bits;  conditional E-value: 2.1e-06
   TIGR01645 213 seedlksvfeafGeivkcklaraptlrkhkGfGflefenlqsqseaiasmnlfdlGGq 270
                 + +dl+ ++   Geiv+ ++ + p +r  kG+G++ef++      aia  n  dl G+
  MMETSP1137-20121227|2705_1  43 TSDDLRELLVXTGEIVSAEVQHHPDGR-SKGWGLVEFADEAGAASAIAKYNDHDLLGR 99 
                 57899999999*******999999887.59************************9886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (267 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        96  (0.0234032); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         8  (0.00195027); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.36u 0.17s 00:00:00.53 Elapsed: 00:00:00.99
# Mc/sec: 355.97
//
Query:       MMETSP1137-20121227|2706_1  [L=111]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (111 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        92  (0.0224281); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.13s 00:00:00.28 Elapsed: 00:00:00.28
# Mc/sec: 523.24
//
Query:       MMETSP1137-20121227|2707_1  [L=971]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (971 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        54  (0.0131643); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.54u 0.13s 00:00:00.67 Elapsed: 00:00:00.56
# Mc/sec: 2248.45
//
Query:       MMETSP1137-20121227|2708_1  [L=141]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (141 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        68  (0.0165773); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.16s 00:00:00.33 Elapsed: 00:00:00.31
# Mc/sec: 600.34
//
Query:       MMETSP1137-20121227|2709_1  [L=112]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (112 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        21  (0.00511945); expected 82.0 (0.02)
Passed bias filter:                       21  (0.00511945); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.15s 00:00:00.30 Elapsed: 00:00:00.30
# Mc/sec: 492.76
//
Query:       MMETSP1137-20121227|2710_1  [L=110]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.1e-17   59.0   0.2    9.3e-17   58.4   0.2    1.3  1  TIGR00327 secE_euk_arch: protein translocase SEC61 complex gamma subunit, archaeal and eukaryotic


Domain annotation for each model (and alignments):
>> TIGR00327  secE_euk_arch: protein translocase SEC61 complex gamma subunit, archaeal and eukaryotic
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.4   0.2   2.3e-20   9.3e-17       7      61 .]      53     107 ..      47     107 .. 0.95

  Alignments for each domain:
  == domain 1    score: 58.4 bits;  conditional E-value: 2.3e-20
   TIGR00327   7 kefikeskrvlkvakKPdkeEYlkvaKvtgigiiivGiiGyiIkiiaellkgvlk 61 
                  +fik+s ++++ + KPd  E++k+a +t ig++i+G+iG+ +k+i ++++ +++
  MMETSP1137-20121227|2710_1  53 MDFIKDSWKLMRRCTKPDSTEFTKIAQATSIGFFIMGFIGFFVKLIFIPINNIIV 107
                 58************************************************99986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (110 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       103  (0.0251097); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.15u 0.13s 00:00:00.28 Elapsed: 00:00:00.54
# Mc/sec: 268.87
//
Query:       MMETSP1137-20121227|2712_1  [L=72]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        34  (0.00828864); expected 82.0 (0.02)
Passed bias filter:                       32  (0.00780107); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.15s 00:00:00.26 Elapsed: 00:00:00.36
# Mc/sec: 263.98
//
Query:       MMETSP1137-20121227|2713_1  [L=238]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00041   17.4   4.5     0.0023   14.9   3.1    2.0  1  TIGR03921 T7SS_mycosin: type VII secretion-associated serine protease mycosin


Domain annotation for each model (and alignments):
>> TIGR03921  T7SS_mycosin: type VII secretion-associated serine protease mycosin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   3.1   5.6e-07    0.0023       1      41 [.     132     176 ..     132     217 .. 0.80

  Alignments for each domain:
  == domain 1    score: 14.9 bits;  conditional E-value: 5.6e-07
   TIGR03921   1 leleeawklstG.agvtVAViDtGvd.rhPrLpgev..aGgDlve 41 
                 le+eeaw ++ G a v++AV+D+Gvd +h +L++++  + g++ +
  MMETSP1137-20121227|2713_1 132 LEMEEAWGITGGsAEVVIAVVDSGVDmDHLDLRRNQwiNEGEICD 176
                 5789******99356889***************998887777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (238 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        95  (0.0231594); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.22u 0.14s 00:00:00.36 Elapsed: 00:00:00.50
# Mc/sec: 628.27
//
Query:       MMETSP1137-20121227|2714_1  [L=400]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   2.2e-166  551.5   0.0   2.5e-166  551.3   0.0    1.0  1  TIGR01979 sufS: cysteine desulfurase, SufS family
   1.2e-114  381.4   0.0   1.4e-114  381.1   0.0    1.0  1  TIGR03392 FeS_syn_CsdA: cysteine desulfurase, catalytic subunit CsdA
    1.9e-78  262.3   0.3    5.1e-78  260.9   0.2    1.6  1  TIGR01976 am_tr_V_VC1184: cysteine desulfurase family protein
    4.6e-68  227.8   0.0    5.3e-68  227.6   0.0    1.0  1  TIGR01977 am_tr_V_EF2568: cysteine desulfurase family protein
    2.3e-47  159.4   0.0    1.1e-46  157.1   0.0    1.8  1  TIGR03402 FeS_nifS: cysteine desulfurase NifS
    8.8e-38  128.3   0.0    3.7e-37  126.2   0.0    1.8  1  TIGR03235 DNA_S_dndA: cysteine desulfurase DndA
    1.9e-34  117.2   0.0    1.1e-33  114.7   0.0    2.0  1  TIGR02006 IscS: cysteine desulfurase IscS
    3.1e-29   99.8   0.0    1.4e-28   97.7   0.0    1.9  1  TIGR03403 nifS_epsilon: cysteine desulfurase, NifS family
    1.3e-10   39.0   0.0    1.7e-10   38.7   0.0    1.2  1  TIGR03301 PhnW-AepZ: 2-aminoethylphosphonate aminotransferase
    2.6e-10   37.8   0.0      3e-10   37.6   0.0    1.2  1  TIGR02326 transamin_PhnW: 2-aminoethylphosphonate--pyruvate transaminase
    8.6e-09   32.7   0.3    2.1e-08   31.4   0.2    1.6  1  TIGR02539 SepCysS: Sep-tRNA:Cys-tRNA synthase
    2.6e-07   27.7   0.5    3.7e-07   27.2   0.3    1.2  1  TIGR03947 viomycin_VioD: capreomycidine synthase
    0.00044   17.1   0.0    0.00069   16.4   0.0    1.2  1  TIGR01141 hisC: histidinol-phosphate transaminase
    0.00044   16.8   0.2    0.00064   16.2   0.1    1.2  1  TIGR01325 O_suc_HS_sulf: O-succinylhomoserine sulfhydrylase
     0.0094   12.5   0.0      0.014   12.0   0.0    1.2  1  TIGR02379 ECA_wecE: TDP-4-keto-6-deoxy-D-glucose transaminase


Domain annotation for each model (and alignments):
>> TIGR01979  sufS: cysteine desulfurase, SufS family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  551.3   0.0  9.1e-169  2.5e-166      15     402 ..       6     395 ..       1     396 [. 0.98

  Alignments for each domain:
  == domain 1    score: 551.3 bits;  conditional E-value: 9.1e-169
   TIGR01979  15 ngkplvYLDsaatsqkPkaVidaveeyyeksnanvhRgvhtlseeateayeeaRekvakfinAksaeeivftkgateslNlvaaslgesslkegdeivvseleHHanivpwqllakrkgaklkvieldedgtldleeleelltektklvaithvsNvlGtvnpveeiiklahevgalvlvDgaqavphlkvdvkeldvDflvfsgHKllgptGiGvLygkkelLeklpPfegGGemieevsleestyaelPlkfEaGtpniagvvglgaaieylekiglekieakekeltayalerleeidglriygpkeee..eragiisfnvegvhahDvatlldeeGiavRsGhhCaqPlmkrldveataRaslalYnteedvdalvealkkvrklf 402
                  ++plvYLDsaatsqkP+aVida++++ +k+nanvhRg+h ls+++te ye aR+kv+++inA  +ee+vft+gate++Nlva+s+g+++l  gde+v+s +eHHan+vpwq+la++kg+ lk+ +l++++ ld+ +l +l+t +tklv+++hvsN+lG+ +pv+e+++ a++vgalvl+D++q+vph++vdv++l+vDflv sgHK++gptGiG+L+g+ +lL+++pP++ GGemi+ v +++st++++P+kfEaGtp+i++++glgaai+yl++ig+++iea+e++l ay+++rl+e++glr+ygp   +   ra++++f+ e vha D++ +ld++Gia+R+GhhC+qPl++ l+++ +aRasl++Ynte++vdalve+l+++ ++f
  MMETSP1137-20121227|2714_1   6 DDRPLVYLDSAATSQKPTAVIDAMRDHMQKDNANVHRGAHLLSVRSTESYEGARDKVSSLINAFRREEVVFTRGATEAINLVAQSWGRAELGDGDEVVLSVMEHHANLVPWQQLAAEKGVVLKFAQLNASECLDVPHLVSLITPRTKLVSVVHVSNTLGCHTPVAEVVAAAKQVGALVLLDACQSVPHMPVDVQALGVDFLVASGHKMCGPTGIGFLWGRYSLLDAMPPWQSGGEMIRDVFFDHSTFSPPPAKFEAGTPAITQAIGLGAAIDYLNEIGMHNIEAYEQQLGAYLYRRLKEVPGLRLYGPDPDDgiPRAALCAFTSESVHAADLSAFLDQDGIAIRTGHHCTQPLHRLLGIAGSARASLYIYNTEAEVDALVESLRSTLDMF 395
                 5789***************************************************************************************************************************************************************************************************************************************************************************************************************98765448*********************************************************************999888 PP

>> TIGR03392  FeS_syn_CsdA: cysteine desulfurase, catalytic subunit CsdA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  381.1   0.0  5.3e-117  1.4e-114      17     396 ..      10     395 ..       5     397 .. 0.97

  Alignments for each domain:
  == domain 1    score: 381.1 bits;  conditional E-value: 5.3e-117
   TIGR03392  17 tvyldsaatalkpqavieatqdfyrlesatvhrsqykealsltaryeaareqvaellnasdaenivwtrGtteslnlvaqsyarprlqpedeiivseaehhanlipwlmvaeqtGakvvklplgadklpdiellpelltkktrllalsqmsnvtGGapdlariialahkagavvvvdGaqGvvhlpadvqaldidfyafsghklygptGiGvlyGktelleamppwqGGGkmlsevsfdgfipqavpfrfeaGtpniaGviGlsaalewlkdldlekaeaysvsladlaeeklaklpGfrsfr......iaessllafdfadvhhsdlvallaesgialraGqhcaqpllaalGvsGtlrasfapyntkqdvdalveavkkalell 396
                  vyldsaat+ kp avi+a++d+ ++++a+vhr  +  + + t+ ye ar++v++l+na + e++v+trG+te++nlvaqs+ r  l  +de+++s  ehhanl+pw  +a + G  +    l+a +  d+  l  l+t++t+l+++  +sn  G  + +a+++a a++ ga+v++d  q v h+p+dvqal +df   sghk+ gptGiG l+G+  ll+amppwq GG m+ +v fd  +  + p +feaGtp i+  iGl aa+++l+++ +++ eay ++l  +  ++l ++pG+r +       i+ ++l af+ + vh +dl a l + gia+r+G+hc+qpl   lG++G+ ras+  ynt+++vdalve++ ++l+++
  MMETSP1137-20121227|2714_1  10 LVYLDSAATSQKPTAVIDAMRDHMQKDNANVHRGAHLLSVRSTESYEGARDKVSSLINAFRREEVVFTRGATEAINLVAQSWGRAELGDGDEVVLSVMEHHANLVPWQQLAAEKGVVLKFAQLNASECLDVPHLVSLITPRTKLVSVVHVSNTLGCHTPVAEVVAAAKQVGALVLLDACQSVPHMPVDVQALGVDFLVASGHKMCGPTGIGFLWGRYSLLDAMPPWQSGGEMIRDVFFDHSTFSPPPAKFEAGTPAITQAIGLGAAIDYLNEIGMHNIEAYEQQLGAYLYRRLKEVPGLRLYGpdpddgIPRAALCAFTSESVHAADLSAFLDQDGIAIRTGHHCTQPLHRLLGIAGSARASLYIYNTEAEVDALVESLRSTLDMF 395
                 69*****************************************************************************************************************86666689***********************************************************************************************************************************************************************************64344447899*********************************************************************9987 PP

>> TIGR01976  am_tr_V_VC1184: cysteine desulfurase family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  260.9   0.2   1.9e-80   5.1e-78      17     401 .]       8     388 ..       2     388 .. 0.92

  Alignments for each domain:
  == domain 1    score: 260.9 bits;  conditional E-value: 1.9e-80
   TIGR01976  17 edvvflDnpaGtqvPqsvldavsaaltrsnanrg.gayessrkadqvvddAreavadllnaespeevvlGanatslafllsralar.tlgpgdEvivtrldheaNispWlqaaedagakvkwaevdeadgeleeadlaallsdrTRLVAvtaasnllGsivdlaaltelvhaaGalvvvDavhyaphaliDvqalgaDllvcsaykffgPh.lGilvvraellkslkpskl..efsed....e.....gperlElGtlqyellaGvvaavdylaelgaseegsrRerlvasfeaieayeerlaerllagLsdlplvtvyglqdekleervptvaftvaklapervvkrlaeqnvlvaaghfyavellrqLgleaeeGvvrvglahYntaeevdklleal 401
                 +++v+lD++a +q P++v+da+ +++++ nan   ga+  s++++++ + Ar++v  l+na   eevv+ + at+ + l++++ +r +lg gdEv+++ ++h+aN  pW+q+a ++g+++k+a++++++  l++ +l +l+ +rT+LV v   sn+lG  + +a ++++++++Galv +Da +  ph  +Dvqalg D+lv s++k+ gP  +G+l++r  ll+ ++p ++  e++ d    +     +p+++E+Gt+ + +  G+ aa+dyl+e+g              +++ieaye++l  +l + L+++p++ +yg+  ++   r    aft + ++++++   l + ++ ++ gh  +  l r Lg+    G +r++l  Ynt++evd l+e+l
  MMETSP1137-20121227|2714_1   8 RPLVYLDSAATSQKPTAVIDAMRDHMQKDNANVHrGAHLLSVRSTESYEGARDKVSSLINAFRREEVVFTRGATEAINLVAQSWGRaELGDGDEVVLSVMEHHANLVPWQQLAAEKGVVLKFAQLNASE-CLDVPHLVSLITPRTKLVSVVHVSNTLGCHTPVAEVVAAAKQVGALVLLDACQSVPHMPVDVQALGVDFLVASGHKMCGPTgIGFLWGRYSLLDAMPPWQSggEMIRDvffdHstfspPPAKFEAGTPAITQAIGLGAAIDYLNEIG--------------MHNIEAYEQQLGAYLYRRLKEVPGLRLYGPDPDDGIPRAALCAFTSESVHAADLSAFLDQDGIAIRTGHHCTQPLHRLLGIA---GSARASLYIYNTEAEVDALVESL 388
                 478****************************976256677899******************************************9469*************************************955.5*******************************************************************************66*************9987753322222111111222279**************************9..............899***************************88889999999******************************9999999***9...********************987 PP

>> TIGR01977  am_tr_V_EF2568: cysteine desulfurase family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  227.6   0.0   1.9e-70   5.3e-68       1     374 [.      11     389 ..      11     391 .. 0.95

  Alignments for each domain:
  == domain 1    score: 227.6 bits;  conditional E-value: 1.9e-70
   TIGR01977   1 iYldnAattypKpdeviealadllkeeggsagrgserlalrasreveetReelaklfnveekakvvFtnnattalNialk..G..ilkegkhvittslEHnaVlRpleklkeelgvevtivkaeeeglvdvekikkaikkdtklivlshaSNvtGtilpieeiaelakekgilflvDaaqtaGvleidveklaidllaftGHKgLlgpqGiggllikekik..lkpllsGGtGsnSasleqpsel..PdrfeaGtlNtlgiagLkagikfiekigianikkkelkltekllegLkeikkvkiyGa..kdaakrvgvvSltlegldseevaaildekfdivvRaGlHCaPlaHktigtlatGtiRlslgyfnteeeieklvealk 374
                 +Yld Aat+ +Kp +vi+a+ d +++ ++++ rg + l +r+++  e +R+++ +l+n+  +++vvFt+ at+a+N++ +  G   l +g++v+ + +EH+a l p ++l+ e+gv +++++ +    +dv ++ + i+  tkl+ + h+SN  G   p+ e+   ak+ g l+l+Da q++  +++dv+ l +d+l+ +GHK + gp+Gig l  + ++   + p +sGG   +   +++ ++   P +feaGt  +   +gL a+i ++++ig++ni++ e +l  +l + Lke+  +++yG+   d   r +++++t e ++ ++++a ld++  i++R+G HC+   H+ +g   +G+ R sl  +nte+e++ lve l+
  MMETSP1137-20121227|2714_1  11 VYLDSAATS-QKPTAVIDAMRDHMQKDNANVHRGAHLLSVRSTESYEGARDKVSSLINAFRREEVVFTRGATEAINLVAQswGraELGDGDEVVLSVMEHHANLVPWQQLAAEKGVVLKFAQLNASECLDVPHLVSLITPRTKLVSVVHVSNTLGCHTPVAEVVAAAKQVGALVLLDACQSVPHMPVDVQALGVDFLVASGHK-MCGPTGIGFLWGRYSLLdaMPPWQSGGEMIRDVFFDHSTFSppPAKFEAGTPAITQAIGLGAAIDYLNEIGMHNIEAYEQQLGAYLYRRLKEVPGLRLYGPdpDDGIPRAALCAFTSESVHAADLSAFLDQDG-IAIRTGHHCTQPLHRLLGI--AGSARASLYIYNTEAEVDALVESLR 389
                 6******99.8******************************************************************9983343345599*****************************************************************************************************************.79********99988756699***************998873368*******************************************************73257789***********************99.**********999*****6..8********************9885 PP

>> TIGR03402  FeS_nifS: cysteine desulfurase NifS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  157.1   0.0   4.1e-49   1.1e-46       1     369 [.      11     391 ..      11     398 .. 0.89

  Alignments for each domain:
  == domain 1    score: 157.1 bits;  conditional E-value: 4.1e-49
   TIGR03402   1 vYlDnnattkvdpevleamlpyltekfGnps.slhsfgkevkkaveeaRekvakllgae.eeeiiftsggtesdntaiksalaakkek.khiittavehpavlslceyLek.egykvtylpvdeeGrldleelkkaltdetilvsvmyanneiGtifpieeiaklakekgvlfhtDavqavGkvpidlkeleidllslsghklhaPkgvgalyirkgv..klepllrGGhqer..............grRagtenvpgivglgkaielaae.eleeenekvkalRdrlekgllekipkarvnGdk.ekRlpntvnisf..efiegeailllldkegiaassGsaCtsgslepshvlramgvpaevahGslRlslsrenteedvdkvlevlpei 369
                 vYlD +at++   +v++am  ++++   n     h ++ ++++  e aR+kv++l++a   ee++ft g+te+ n   +s  +a+    ++++ + +eh+a l   ++L+  +g+ ++  + +++ +ld+ +l + +t +t lvsv++  n +G  +p++e+ + ak+ g+l   Da q+v ++p+d+++l +d+l  sghk+ +P g+g l+ r ++   + p   GG+  r              +  agt  +++ +glg ai+  +e  +++ ++  ++l   l ++l e +p  r+ G   ++ +p ++  +f  e + +  +  +ld+ gia  +G  Ct    +p h l+ +        Gs R sl  +nte++vd ++e l + 
  MMETSP1137-20121227|2714_1  11 VYLDSAATSQKPTAVIDAMRDHMQKDNANVHrGAHLLSVRSTESYEGARDKVSSLINAFrREEVVFTRGATEAINLVAQSWGRAELGDgDEVVLSVMEHHANLVPWQQLAAeKGVVLKFAQLNASECLDVPHLVSLITPRTKLVSVVHVSNTLGCHTPVAEVVAAAKQVGALVLLDACQSVPHMPVDVQALGVDFLVASGHKMCGPTGIGFLWGRYSLldAMPPWQSGGEMIRdvffdhstfspppaKFEAGTPAITQAIGLGAAIDYLNEiGMHNIEAYEQQLGAYLYRRLKE-VPGLRLYGPDpDDGIPRAALCAFtsESVHAADLSAFLDQDGIAIRTGHHCT----QPLHRLLGI-------AGSARASLYIYNTEAEVDALVESLRST 391
                 8***********************9999976269************************889*******************999998777********************9879999999************************************************************************************************997546889999998755222222222222224579***************9765526888888899999999999876.********654999**99988883356888889999**************9....799*99876.......5*********************99865 PP

>> TIGR03235  DNA_S_dndA: cysteine desulfurase DndA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  126.2   0.0   1.4e-39   3.7e-37       1     325 [.      12     355 ..      12     368 .. 0.83

  Alignments for each domain:
  == domain 1    score: 126.2 bits;  conditional E-value: 1.4e-39
   TIGR03235   1 YLDvnattpvdpevaevvrpflleefGnassrthefgakakkavekarkqvaealga.dkeeviftsgatesnnlallGlaeygeqkgkkhiitsaiehkavlepikfLeen.GftvtylevdesGridveelkeairedtllvslmavnnevGslqpireiaevleerevflhvDaaqvvgkiavdlsakridlisvsghkiygPkGiGalvirkrrkkkap........lkPllfGGGq....ergLrpGtLpvalivGlgeaaeiarkn.aeakekklralknklldaLkt.levklng.dpaekipnv..lnlsidgvnsealivaLkav.vavstgsaCs 325
                 YLD +at++   +v++++r++++++  n     h ++ ++ ++ e ar +v+++++a  +eev+ft gate+ nl+     +++  +g + ++ s +eh+a l p + L+++ G   ++++ ++s  +dv +l + i++ t lvs+++v n +G   p++e+    ++ ++++  Da q+v ++ vd++a  +d++  sghk+ gP GiG l  r    + +p        ++ ++f          +  +Gt ++++ +Glg a++  ++   ++ e   ++l   l  +Lk+ + ++l g dp++ ip      ++ + v++  l   L ++ +a+ tg  C+
  MMETSP1137-20121227|2714_1  12 YLDSAATSQKPTAVIDAMRDHMQKDNANVHRGAHLLSVRSTESYEGARDKVSSLINAfRREEVVFTRGATEAINLVAQSWGRAELGDG-DEVVLSVMEHHANLVPWQQLAAEkGVVLKFAQLNASECLDVPHLVSLITPRTKLVSVVHVSNTLGCHTPVAEVVAAAKQVGALVLLDACQSVPHMPVDVQALGVDFLVASGHKMCGPTGIGFLWGRYSLLDAMPpwqsggemIRDVFFDHSTfsppPAKFEAGTPAITQAIGLGAAIDYLNEIgMHNIEAYEQQLGAYLYRRLKEvPGLRLYGpDPDDGIPRAalCAFTSESVHAADLSAFLDQDgIAIRTGHHCT 355
                 9******************************************************985789***************998888877777.78******************9999**************************************************************************************************99887544433211122222444444433211112356788888888889998888666541555666778888888888888777887764677788764114666677777777777754338888888887 PP

>> TIGR02006  IscS: cysteine desulfurase IscS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  114.7   0.0   4.1e-36   1.1e-33       5     327 ..      11     355 ..       8     399 .. 0.77

  Alignments for each domain:
  == domain 1    score: 114.7 bits;  conditional E-value: 4.1e-36
   TIGR02006   5 iyldyaattpvdkrvaekmleyltvkfGnpasrshkfGweaeeavenarkevaeligadsr.eivftsGatesdnlaikGvakfykskgkhiitsktehkavldtcrele.reGfevtylevkedGlidleelkaairddtilvsvmavnneiGviqdiaaigelcrerkvlfhvdaaqsvGkvpidleelkvdllslsahkiyGpkGiGalyvrrkprvrlealihGGGherG..............lrsGtlpthqivGlGeafriake.elakdtarvlklrdkllngiesieevylng.dleqrvksnlnvsf..nyveGe..slilalkdlavssGsact 327
                 +yld aat+   + v+++m +++ ++  n +  +h    ++ e+ e ar++v++li+a  r e+vft Gate+ nl+ +   +     g+ ++ s++eh a l   ++l  ++G+ + + +++    +d+ +l + i+  t lvsv++v n +G   ++a++ + +++   l   da+qsv  +p+d+++l vd+l  s+hk+ Gp GiG l+ r      + +   GG   r               + +Gt ++ q +GlG a+   +e  +++ +a  ++l   l++ ++++  + l g d +++++     +f  + v     s +l    +a+ +G  ct
  MMETSP1137-20121227|2714_1  11 VYLDSAATSQKPTAVIDAMRDHMQKDNANVHRGAHLLSVRSTESYEGARDKVSSLINAFRReEVVFTRGATEAINLVAQSWGRAELGDGDEVVLSVMEHHANLVPWQQLAaEKGVVLKFAQLNASECLDVPHLVSLITPRTKLVSVVHVSNTLGCHTPVAEVVAAAKQVGALVLLDACQSVPHMPVDVQALGVDFLVASGHKMCGPTGIGFLWGRYSLLDAMPPWQSGGEMIRDvffdhstfspppakFEAGTPAITQAIGLGAAIDYLNEiGMHNIEAYEQQLGAYLYRRLKEVPGLRLYGpDPDDGIPRAALCAFtsESVHAAdlSAFLDQDGIAIRTGHHCT 355
                 8*********************************************************887369*******************9************************972579999***********************************************************************************************9887776677777777765553111111222222224677777777777777776554424555556666677777777777777766653556666665555552233444311333444456666666666 PP

>> TIGR03403  nifS_epsilon: cysteine desulfurase, NifS family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.7   0.0     5e-31   1.4e-28       1     231 [.      11     243 ..      11     397 .. 0.82

  Alignments for each domain:
  == domain 1    score: 97.7 bits;  conditional E-value: 5e-31
   TIGR03403   1 vyldnnattlldpkvkelmepflkdiygnp.nslhkfgtethpaiaealdklykginardeddivitscatesnnwvlkgvyfdeilkkeknhiittevehpavraacafl.eslgvevtylpvneqgvitaeqvreaitektalvsvmwannetglifpikeigelckekgvlfhtdavqavgkipvdvqkvkvdflsfsahkfhgpkgvgalyikkgv..eltpllhggehms 231
                 vyld  at+     v + m+ ++++   n     h    ++  + + a dk+   ina   +++v+t  ate++n v ++  + e+ ++  ++++ + +eh a     + l  + gv + +  +n    +++ ++ + it +t lvsv+  +n  g   p+ e+ + +k+ g+l   da q+v ++pvdvq + vdfl  s hk+ gp g+g l+ + ++   + p   gge ++
  MMETSP1137-20121227|2714_1  11 VYLDSAATSQKPTAVIDAMRDHMQKDNANVhRGAHLLSVRSTESYEGARDKVSSLINAFRREEVVFTRGATEAINLVAQSWGRAELGDG--DEVVLSVMEHHANLVPWQQLaAEKGVVLKFAQLNASECLDVPHLVSLITPRTKLVSVVHVSNTLGCHTPVAEVVAAAKQVGALVLLDACQSVPHMPVDVQALGVDFLVASGHKMCGPTGIGFLWGRYSLldAMPPWQSGGEMIR 243
                 8*********999*********998888862578999*******************************************999888665..689******999877766652689******************************************************************************************************997435678888888765 PP

>> TIGR03301  PhnW-AepZ: 2-aminoethylphosphonate aminotransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.7   0.0   6.2e-13   1.7e-10     124     209 ..     149     233 ..     118     368 .. 0.72

  Alignments for each domain:
  == domain 1    score: 38.7 bits;  conditional E-value: 6.2e-13
   TIGR03301 124 pdithvavvHhEtttgiLnpleaiakvarshgavlivDavSslgaipidieeldvdaliasanKclegvpGlsFviarrdlleasa 209
                 p  + v vvH   t g   p++++++ a++ ga +++Da  s+  +p+d++ l+vd+l+as  K + g +G++F+ +r +ll+a  
  MMETSP1137-20121227|2714_1 149 PRTKLVSVVHVSNTLGCHTPVAEVVAAAKQVGALVLLDACQSVPHMPVDVQALGVDFLVASGHK-MCGPTGIGFLWGRYSLLDAMP 233
                 5667899******************************************************999.5799***********998876 PP

>> TIGR02326  transamin_PhnW: 2-aminoethylphosphonate--pyruvate transaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.6   0.0   1.1e-12     3e-10     128     211 ..     149     231 ..     107     351 .. 0.87

  Alignments for each domain:
  == domain 1    score: 37.6 bits;  conditional E-value: 1.1e-12
   TIGR02326 128 peithvalvhsetttGilnPieavakvakryGkvlivdamssfGgieidiaeleidylissankciqGvPGfgfviakeaelek 211
                 p    v++vh   t G   P+ +v++ ak+ G  +++da  s+  +++d+++l +d+l++s  k   G  G+gf+  + + l++
  MMETSP1137-20121227|2714_1 149 PRTKLVSVVHVSNTLGCHTPVAEVVAAAKQVGALVLLDACQSVPHMPVDVQALGVDFLVASGHKM-CGPTGIGFLWGRYSLLDA 231
                 5666799*****************************************************99994.6999****9998877765 PP

>> TIGR02539  SepCysS: Sep-tRNA:Cys-tRNA synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.4   0.2   7.7e-11   2.1e-08      67     218 ..      72     219 ..      57     227 .. 0.71

  Alignments for each domain:
  == domain 1    score: 31.4 bits;  conditional E-value: 7.7e-11
   TIGR02539  67 dvvrvtaGareakfavmhalck....eGdvvvldglahytsyvaaeraglevkevpetgspeykvkleeykevieevedesgkevalallthvdgeyGnladakkvakvcrkkgvplllncaytvGrlpvsakevkadfivgsGhksmaasapvGv 218
                 ++v  t+Ga ea   v ++ ++    +Gd vvl  + h++  v  ++  +e  +v +  +    ++  e  +v + v       ++l+ + hv    G  +   +v+  +++ g  +ll++  +v  +pv+ + +++df+v+sGhk    ++p G+
  MMETSP1137-20121227|2714_1  72 EEVVFTRGATEAINLVAQSWGRaelgDGDEVVLSVMEHHANLVPWQQLAAEKGVVLKFAQ----LNASECLDVPHLV-SLITPRTKLVSVVHVSNTLGCHTPVAEVVAAAKQVGALVLLDACQSVPHMPVDVQALGVDFLVASGHKM---CGPTGI 219
                 556667777777777777666533335777777777777777776666666555554332....2333322222222.22234578999********************************************************94...566665 PP

>> TIGR03947  viomycin_VioD: capreomycidine synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.2   0.3   1.4e-09   3.7e-07      55     183 ..      57     188 ..      44     214 .. 0.81

  Alignments for each domain:
  == domain 1    score: 27.2 bits;  conditional E-value: 1.4e-09
   TIGR03947  55 klraaladrlagGdaekvlvthGsseaiylvlt....allrPGdevvvvdpayhs.l...selavalgakvrrwplaaerdfrpdlddlralvtdrtrlvvvnfPhnPtGasvderelsellelaaesgavllWdaa 183
                 + r+ +++ ++    e+v+ t G++eai lv +    a l  Gdevv+    +h  l   ++la+ +g+ ++  +l+a++    d+++l  l+t+rt+lv v    n  G        +e+++ a+++ga +l da 
  MMETSP1137-20121227|2714_1  57 GARDKVSSLINAFRREEVVFTRGATEAINLVAQswgrAELGDGDEVVLSVMEHHAnLvpwQQLAAEKGVVLKFAQLNASE--CLDVPHLVSLITPRTKLVSVVHVSNTLGCH---TPVAEVVAAAKQVGALVLLDAC 188
                 45666777777777899**************97333356889*****987777753433379999999999999988654..6799*********************99975...446799**********999975 PP

>> TIGR01141  hisC: histidinol-phosphate transaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0   2.5e-06   0.00069      32     181 ..      23     187 ..       7     188 .. 0.77

  Alignments for each domain:
  == domain 1    score: 16.4 bits;  conditional E-value: 2.5e-06
   TIGR01141  32 fgpsekvkealkeelkklhrYpdpqalelkealakylg........veeenillgnGsdelielli....raflepgdavlvleptysm....YevsakiagaevkevplkedgqedleavleaakekvklvflasPnnPtGnllkreeiekvleevedalVVvDe 181
                 +++ +++++++++  +++hr  +  +++ +e++  + +        +  e++++++G+ e+i+l++    ra l +gd+v+ + +        ++  a+ +g+ +k ++l+++   d++++   ++ ++klv + + +n  G +   +e+++ +++v  alV++D 
  MMETSP1137-20121227|2714_1  23 TAVIDAMRDHMQKDNANVHRGAHLLSVRSTESYEGARDkvsslinaFRREEVVFTRGATEAINLVAqswgRAELGDGDEVVLSVMEHHAnlvpWQQLAAEKGVVLKFAQLNASECLDVPHLVSLITPRTKLVSVVHVSNTLGCHTPVAEVVAAAKQV-GALVLLDA 187
                 444444444444444467776666666666666555556667777999*****************93333456788988877766554323338899999*************99*****************************************9.89***995 PP

>> TIGR01325  O_suc_HS_sulf: O-succinylhomoserine sulfhydrylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.1   2.3e-06   0.00064     128     202 ..     139     214 ..      93     224 .. 0.82

  Alignments for each domain:
  == domain 1    score: 16.2 bits;  conditional E-value: 2.3e-06
   TIGR01325 128 dlkaWeaalkantkllfletPsnPlaelvdiaalaelahavGaklvvdnvfatPvlqqplk.lGadvvvysatkai 202
                 d+ +  + + + tkl+ +   sn l   + +a +   a  vGa++++d +   P +   ++ lG+d  v s+ k+ 
  MMETSP1137-20121227|2714_1 139 DVPHLVSLITPRTKLVSVVHVSNTLGCHTPVAEVVAAAKQVGALVLLDACQSVPHMPVDVQaLGVDFLVASGHKMC 214
                 55566667899******************************************9987666439*********9976 PP

>> TIGR02379  ECA_wecE: TDP-4-keto-6-deoxy-D-glucose transaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.0   0.0   5.1e-05     0.014      41     158 ..      66     192 ..      53     206 .. 0.76

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 5.1e-05
   TIGR02379  41 eerlgakkalltpsctaalelaall...ldiqeGdevimpsy....tfvstanafvlrGakivfvdiredtlnidekkieaaitertkaivpvhya.Gvacd..mdtimalankyelfviedaaqGlm 158
                  + +  + +++t   t+a++l a      ++ +Gdev++        +v      + +G +++f ++++    +d  ++ + it rtk + +vh +  + c+  +  ++a a++    v+ da q + 
  MMETSP1137-20121227|2714_1  66 INAFRREEVVFTRGATEAINLVAQSwgrAELGDGDEVVLSVMehhaNLVPWQQLAAEKGVVLKFAQLNASE-CLDVPHLVSLITPRTKLVSVVHVSnTLGCHtpVAEVVAAAKQVGALVLLDACQSVP 192
                 56666778889999999999988752226889999998765511113556666677889999999998765.68999999**************87335665227889999**************884 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (400 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       149  (0.0363237); expected 82.0 (0.02)
Passed bias filter:                      136  (0.0331546); expected 82.0 (0.02)
Passed Vit filter:                        27  (0.00658216); expected 4.1 (0.001)
Passed Fwd filter:                        15  (0.00365675); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.54u 0.19s 00:00:00.73 Elapsed: 00:00:00.54
# Mc/sec: 977.70
//
Query:       MMETSP1137-20121227|2715_1  [L=343]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.5e-44  149.7   0.2    3.3e-44  149.4   0.1    1.1  1  TIGR00990 3a0801s09: mitochondrial precursor proteins import receptor
    2.3e-26   90.6   0.4    3.1e-22   77.1   0.1    2.6  3  TIGR02521 type_IV_pilW: type IV pilus biogenesis/stability protein PilW
    1.1e-24   84.2   1.0    1.2e-19   67.5   0.6    2.1  2  TIGR02917 PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein
    2.1e-13   48.0   2.2    8.5e-05   20.1   0.1    3.8  3  TIGR02552 LcrH_SycD: type III secretion low calcium response chaperone LcrH/SycD
    3.5e-07   28.7   0.6    0.00088   17.7   0.0    3.4  4  TIGR02795 tol_pal_ybgF: tol-pal system protein YbgF
     0.0065   12.5   0.4       0.53    6.2   0.0    2.3  2  TIGR03939 PGA_TPR_OMP: poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA


Domain annotation for each model (and alignments):
>> TIGR00990  3a0801s09: mitochondrial precursor proteins import receptor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  149.4   0.1   4.8e-47   3.3e-44     331     592 ..      87     342 ..      68     343 .] 0.95

  Alignments for each domain:
  == domain 1    score: 149.4 bits;  conditional E-value: 4.8e-47
   TIGR00990 331 alalelrGifkflkgkheealadlsksieldPrltqsyikrasinlelgdsdkaeedfdkalkkdsedsdiyyhraqlhfikgefaeaakdydksidldpdfifsyiqlavlqyklgsiassealfrrakkkfpeaPdvynyyaellldknkfdealekfdlaielekelkpisvnvlPlinkalalfrtkedfieaekllekalildPesdiavitlaqlllqqekvdealklferaaelarteeelvqaisyaeatrvqi 592
                 ++al + G+f  l+g+  ea+     +++l+P+  +  +kras+  e+++  ka  df+ a+  d+  +di+ hr+ql  ++++   a  d  k++ +d++ +++ iql++  ++ g+  ++  +f++a k+fp+ P+v ny++ell++  + dea  kf+ a+ l     +     l  +n  ++ ++ ++d   a k + +a+ +dP ++ a + +a l+lq  +++ea+    +a  l r ++elv+  s  eat  q 
  MMETSP1137-20121227|2715_1  87 SYALTMAGMFLHLRGNYAEAMGCYDYALQLQPTSIEVLLKRASLWFEKEELPKALADFETAIGIDAGCADIFCHRGQLYILQNDLGSALADLRKAVSIDAKSVLARIQLGMALHRHGQQSEARRVFSEAEKEFPNSPEVLNYFGELLVESGEVDEAKAKFEKALSLSSSKFA-----LAHVNLGVLQMHLQQDVEGAIKYCRRATEVDPLCETAHVHMAHLQLQMSNLKEAVV-SSKAVALLRMKQELVDCFSMREATAAQL 342
                 4778889**************************999**********************************************************************************************************************************876544.....456888999999******************************************96.57889999****************9985 PP

>> TIGR02521  type_IV_pilW: type IV pilus biogenesis/stability protein PilW
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0      0.56   3.8e+02      31      50 ..       9      28 ..       4      32 .. 0.70
   2 !   11.3   0.0   5.9e-05      0.04      36      97 ..      91     153 ..      70     158 .. 0.82
   3 !   77.1   0.1   4.5e-25   3.1e-22      35     189 ..     159     313 ..     151     326 .. 0.93

  Alignments for each domain:
  == domain 1    score: -1.8 bits;  conditional E-value: 0.56
   TIGR02521 31 akirvqLaleYleqgdlekA 50
                a+   + a +Y+ ++d+e+A
  MMETSP1137-20121227|2715_1  9 ARCLCERAHAYMSANDFESA 28
                45556778888888888887 PP

  == domain 2    score: 11.3 bits;  conditional E-value: 5.9e-05
   TIGR02521  36 qLaleYle.qgdlekAkenlekAleldpkdadanlalAlyyqqlgelekAeesfrkAltlkpn 97 
                  +a  +l+ +g++++A    + Al+l+p + ++ l +A ++ +  el kA + f++A+ ++  
  MMETSP1137-20121227|2715_1  91 TMAGMFLHlRGNYAEAMGCYDYALQLQPTSIEVLLKRASLWFEKEELPKALADFETAIGIDAG 153
                 5555666548999********************************************998866 PP

  == domain 3    score: 77.1 bits;  conditional E-value: 4.5e-25
   TIGR02521  35 vqLaleYleqgdlekAkenlekAleldpkdadanlalAlyyqqlgelekAeesfrkAltlkpnngdvlNNYGtFLcqqkkyeeAeqqfeaAiedpkYeqparsyeNaglcalk.agdtekaekyltralkidpkrpesllelaelklkkgqyaeAr 189
                    +  Y+ q+dl +A ++l kA+ +d+k+  a   l++++ + g++++A + f +A +  pn+++vlN +G  L + ++++eA+++fe+A++     + a +  N+g+ +++ ++d+e a ky +ra+++dp    +   +a+l+l+  +++eA 
  MMETSP1137-20121227|2715_1 159 CHRGQLYILQNDLGSALADLRKAVSIDAKSVLARIQLGMALHRHGQQSEARRVFSEAEKEFPNSPEVLNYFGELLVESGEVDEAKAKFEKALSLSS-SKFALAHVNLGVLQMHlQQDVEGAIKYCRRATEVDPLCETAHVHMAHLQLQMSNLKEAV 313
                 566788*************************************************************************************98765.778999*********94467899*****************************9999985 PP

>> TIGR02917  PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.0   1.1e-07   7.8e-05     191     254 ..      85     148 ..       7     152 .. 0.77
   2 !   67.5   0.6   1.8e-22   1.2e-19     381     553 ..     139     313 ..     136     328 .. 0.91

  Alignments for each domain:
  == domain 1    score: 18.5 bits;  conditional E-value: 1.1e-07
   TIGR02917 191 knvdAllLkgdlllssgnieeAlaayrkaielkpnaiaallalatilleegefeeAekkadall 254
                 +++ Al + g  l  +gn++eA+  y+ a++l+p +i++ll +a+  +e++e+ +A ++ ++++
  MMETSP1137-20121227|2715_1  85 APSYALTMAGMFLHLRGNYAEAMGCYDYALQLQPTSIEVLLKRASLWFEKEELPKALADFETAI 148
                 3456888888888888999999999999999999999999999999998888888888888764 PP

  == domain 2    score: 67.5 bits;  conditional E-value: 1.8e-22
   TIGR02917 381 kAaeylakaseldPenaaaktklgiskLaqGdkseaiadLetAvkldpellraellLilsyLrsgefdkalaaakklekkqpdnaslynllgaiylgkkdlakAreafekALkiepdff.pAlanLArldlq.ekniddAkqrfekvlaidpknlkallaLaelaarkgneeeav 553
                 kA + ++ a  +d   a++  + g++++ q+d  +a+adL++Av +d +++ a++ L ++  r g+   a+ +  + ek+ p+++++ n+ g  ++ +++ ++A+++fekAL++ + +f  A +nL  l++  +++++ A+++  ++   dp    a+  +a+l+++  n +eav
  MMETSP1137-20121227|2715_1 139 KALADFETAIGIDAGCADIFCHRGQLYILQNDLGSALADLRKAVSIDAKSVLARIQLGMALHRHGQQSEARRVFSEAEKEFPNSPEVLNYFGELLVESGEVDEAKAKFEKALSLSSSKFaLAHVNLGVLQMHlQQDVEGAIKYCRRATEVDPLCETAHVHMAHLQLQMSNLKEAV 313
                 788889999999*****************************************************************************************************98765516999*97777654678*******************************97776665 PP

>> TIGR02552  LcrH_SycD: type III secretion low calcium response chaperone LcrH/SycD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.1   1.2e-07   8.5e-05      53     116 ..      87     151 ..      81     156 .. 0.88
   2 !   16.1   0.0   2.2e-06    0.0015      56     119 ..     193     256 ..     182     269 .. 0.90
   3 !    7.6   0.2    0.0009      0.62      62     106 ..     269     313 ..     258     330 .. 0.86

  Alignments for each domain:
  == domain 1    score: 20.1 bits;  conditional E-value: 1.2e-07
   TIGR02552  53 kywlgLa.aclqalkeyeeAiaaYalaaaldlddprpvyhaaecllalgekeeAlkaLklaieia 116
                  y+l +a + l+  ++y+eA+ +Y++a++l++ + ++++++a   ++++e  +Al+++++ai i+
  MMETSP1137-20121227|2715_1  87 SYALTMAgMFLHLRGNYAEAMGCYDYALQLQPTSIEVLLKRASLWFEKEELPKALADFETAIGID 151
                 577777614578889**********************************************9876 PP

  == domain 2    score: 16.1 bits;  conditional E-value: 2.2e-06
   TIGR02552  56 lgLaaclqalkeyeeAiaaYalaaaldlddprpvyhaaecllalgekeeAlkaLklaieiaeek 119
                 + L+++l++ ++ +eA+  ++ a +  +++p+++ + +e l++ ge  eA++ ++ a+ ++ +k
  MMETSP1137-20121227|2715_1 193 IQLGMALHRHGQQSEARRVFSEAEKEFPNSPEVLNYFGELLVESGEVDEAKAKFEKALSLSSSK 256
                 68*******************************************************9998876 PP

  == domain 3    score: 7.6 bits;  conditional E-value: 0.0009
   TIGR02552  62 lqalkeyeeAiaaYalaaaldlddprpvyhaaecllalgekeeAl 106
                 ++ +++ e+Ai+   +a+ +d+    +++h a   l++ + +eA 
  MMETSP1137-20121227|2715_1 269 MHLQQDVEGAIKYCRRATEVDPLCETAHVHMAHLQLQMSNLKEAV 313
                 4678899*********************************99996 PP

>> TIGR02795  tol_pal_ybgF: tol-pal system protein YbgF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.0       5.6   3.8e+03      47      62 ..      17      32 ..      15      44 .. 0.67
   2 ?   -0.8   0.0      0.71   4.9e+02      52      63 ..     100     111 ..      59     148 .. 0.54
   3 !   17.7   0.0   1.3e-06   0.00088      45     111 ..     161     224 ..     158     228 .. 0.89
   4 !    7.1   0.0    0.0025       1.7      45      92 ..     229     274 ..     226     287 .. 0.85

  Alignments for each domain:
  == domain 1    score: -3.7 bits;  conditional E-value: 5.6
   TIGR02795 47 ealyakkkykdAakaf 62
                 a+++++++++A   +
  MMETSP1137-20121227|2715_1 17 HAYMSANDFESAFSDW 32
                5666666666666555 PP

  == domain 2    score: -0.8 bits;  conditional E-value: 0.71
   TIGR02795  52 kkkykdAakafl 63 
                 +++y++A   + 
  MMETSP1137-20121227|2715_1 100 RGNYAEAMGCYD 111
                 333333333333 PP

  == domain 3    score: 17.7 bits;  conditional E-value: 1.3e-06
   TIGR02795  45 lGealyakkkykdAakaflevvkkypksekapdallklgeslqelgqkekAkktlqevikrYPkssa 111
                 +G++++ ++++ +A +  +++v+    ++k+  a ++lg++l + gq+++A+++++e  k++P+s++
  MMETSP1137-20121227|2715_1 161 RGQLYILQNDLGSALADLRKAVSI---DAKSVLARIQLGMALHRHGQQSEARRVFSEAEKEFPNSPE 224
                 699999999999999999999985...5566677899***************************987 PP

  == domain 4    score: 7.1 bits;  conditional E-value: 0.0025
   TIGR02795  45 lGealyakkkykdAakaflevvkkypksekapdallklgeslqelgqk 92 
                  Ge+l++ +++++A+++f+++++   +s+k + a ++lg+++ +l+q 
  MMETSP1137-20121227|2715_1 229 FGELLVESGEVDEAKAKFEKALS--LSSSKFALAHVNLGVLQMHLQQD 274
                 79********************9..78899999999999999888775 PP

>> TIGR03939  PGA_TPR_OMP: poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.8   0.0    0.0021       1.4     131     195 ..      61     128 ..      57     148 .. 0.76
   2 !    6.2   0.0   0.00078      0.53     405     478 ..     199     273 ..     156     319 .. 0.86

  Alignments for each domain:
  == domain 1    score: 4.8 bits;  conditional E-value: 0.0021
   TIGR03939 131 adagkdeeAlkalkelkerfpsdaerleal...aYvlraaedsldalaaiqqalrlePdnkellkelv 195
                 +d ++ ++ l++ k + ++++++++  +al   + +l  ++++++a+++++ al+l+P++ e+l+++ 
  MMETSP1137-20121227|2715_1  61 LDEKQLQQVLSTWKDFSSAKAPHVAPSYALtmaGMFLHLRGNYAEAMGCYDYALQLQPTSIEVLLKRA 128
                 57777778888888887777755554333311156788899999****************99998875 PP

  == domain 2    score: 6.2 bits;  conditional E-value: 0.00078
   TIGR03939 405 laysgdlseAekkleellatAPgNqslrlalaeveraRgwprrAeqllkkaesl.epdslsaergqaetaldlqe 478
                 l  +g+ seA +  +e+ ++ P  +++    +e+    g  ++A+  ++ka sl   + ++a ++++ +++ lq+
  MMETSP1137-20121227|2715_1 199 LHRHGQQSEARRVFSEAEKEFPNSPEVLNYFGELLVESGEVDEAKAKFEKALSLsSSKFALAHVNLGVLQMHLQQ 273
                 446789999999999999999999999999999999999999999999999999888888999999999998874 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (343 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.41u 0.14s 00:00:00.55 Elapsed: 00:00:00.40
# Mc/sec: 1131.81
//
Query:       MMETSP1137-20121227|2716_1  [L=109]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (109 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        27  (0.00658216); expected 82.0 (0.02)
Passed bias filter:                       25  (0.00609459); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.25
# Mc/sec: 575.47
//
Query:       MMETSP1137-20121227|2717_1  [L=411]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (411 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        84  (0.0204778); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.14s 00:00:00.44 Elapsed: 00:00:00.74
# Mc/sec: 733.07
//
Query:       MMETSP1137-20121227|2718_1  [L=171]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.8e-11   39.9   8.5      9e-11   39.7   5.9    1.1  1  TIGR01144 ATP_synt_b: ATP synthase F0, B subunit
    0.00048   17.8   5.8    0.00058   17.5   4.0    1.1  1  TIGR03321 alt_F1F0_F0_B: alternate F1F0 ATPase, F0 subunit B
     0.0045   12.8   3.4      0.005   12.7   2.4    1.0  1  TIGR03480 HpnN: hopanoid biosynthesis associated RND transporter like protein HpnN
      0.005   14.9  12.4       0.01   13.9   8.6    1.6  1  TIGR02926 AhaH: ATP synthase archaeal, H subunit
  ------ inclusion threshold ------
      0.036   11.3   1.8      0.047   10.9   1.2    1.2  1  TIGR02872 spore_ytvI: sporulation integral membrane protein YtvI


Domain annotation for each model (and alignments):
>> TIGR01144  ATP_synt_b: ATP synthase F0, B subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.7   5.9   1.1e-13     9e-11      18     130 ..      47     159 ..      30     170 .. 0.88

  Alignments for each domain:
  == domain 1    score: 39.7 bits;  conditional E-value: 1.1e-13
   TIGR01144  18 pplikvletRqekIaddlasaekakkelalaqkkaqellkeakeeaaeiienAnkrkseikeeikkeAeeerekilakaeaeieaekerareelrkevadLavalaekiieke 130
                 + l + l +Rq++I  ++++ e+  +++ +  ++ q++l++a+   a+i  +A+ ++++ik  i +e  +e e++ a+a+a+i + ++++r+++   v++La++     +e +
  MMETSP1137-20121227|2718_1  47 NALSESLTERQQRILGAIQESEERLEQATERLAESQKQLEQAQIVIASIGTDAEATAKQIKKSILTEGTQEIERLTASAQAQIVTIEAKVRKQISDYVVTLALQRVTTQLEGK 159
                 56778899**********************************************************************************************98666555554 PP

>> TIGR03321  alt_F1F0_F0_B: alternate F1F0 ATPase, F0 subunit B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   4.0   7.1e-07   0.00058      12     125 ..      31     144 ..      26     168 .. 0.83

  Alignments for each domain:
  == domain 1    score: 17.5 bits;  conditional E-value: 7.1e-07
   TIGR03321  12 viNFLiLvwLLkrFlYkpildaldeREkkiaseladAdekkkeAeqereeyeekneeldqqreellekakeeveaerqrlldeareeadeirkkraealreeqaelkeeierrt 125
                 v+N  iLv  + +   + + ++l eR ++i + +++ +e  ++A +   e ++++e+ +   +++ ++a++ +++ ++++l e  +e++++ ++ ++ + + +a++ ++i+  +
  MMETSP1137-20121227|2718_1  31 VVNLAILVGGVFYLGSNALSESLTERQQRILGAIQESEERLEQATERLAESQKQLEQAQIVIASIGTDAEATAKQIKKSILTEGTQEIERLTASAQAQIVTIEAKVRKQISDYV 144
                 6777777777766666777799*******************************************************************9999888888776666666665544 PP

>> TIGR03480  HpnN: hopanoid biosynthesis associated RND transporter like protein HpnN
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.7   2.4   6.1e-06     0.005     549     650 ..      33     134 ..      29     169 .. 0.82

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 6.1e-06
   TIGR03480 549 dlalvlgptlavaeekpapsaeeeaaalrklaaklekalekeekpdakaakkLaeslarllakakaqaatlealqkallatLpeelerlrdaleaepvtled 650
                 +la+++g +    ++++ +s  e+++ +  + ++ e++le+ ++  a+  k+L++++  +++  + ++at+++++k++l+   +e+erl ++ +a+ vt+e+
  MMETSP1137-20121227|2718_1  33 NLAILVGGVFYLGSNALSESLTERQQRILGAIQESEERLEQATERLAESQKQLEQAQIVIASIGTDAEATAKQIKKSILTEGTQEIERLTASAQAQIVTIEA 134
                 5677777777777888888888888888888888888888888888888899988888888999999********************************986 PP

>> TIGR02926  AhaH: ATP synthase archaeal, H subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   8.6   1.3e-05      0.01      12      85 .]      57     129 ..      46     129 .. 0.83

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 1.3e-05
   TIGR02926  12 eelieeAkeerkqriaeAreeAkelleeaeeeAeklkeeileeaeeeiekEaekIleegekeieelkskAkeki 85 
                 +++i  A++e+++r+++A e+ +e  ++  e+A+ +   i  +ae+ +++ ++ Il+eg++eie l   A+++i
  MMETSP1137-20121227|2718_1  57 QQRILGAIQESEERLEQATERLAESQKQL-EQAQIVIASIGTDAEATAKQIKKSILTEGTQEIERLTASAQAQI 129
                 46677888888888888888888876665.4688888888999***************************9876 PP

>> TIGR02872  spore_ytvI: sporulation integral membrane protein YtvI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   1.2   5.7e-05     0.047      63     195 ..      35     169 ..      24     171 .] 0.68

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 5.7e-05
   TIGR02872  63 liiivllltilvtelvkelialakklpqylseikeaikkllkeleslleslpeevqktikenietlle.klanqvaelakklitsilsflaaiPeflivl...lvtLiatfliskdlprlkeklfsllpervsqklk 195
                  i++++++++    l ++l++  + +   ++e +e +++  ++l +  ++l++ +   + ++i t +e ++++  ++++++ +++i ++ a+  + ++++   +   i+ +++++ l+r+  +l   l+ +++q+++
  MMETSP1137-20121227|2718_1  35 AILVGGVFYLGSNALSESLTERQQRILGAIQESEERLEQATERLAESQKQLEQAQ--IVIASIGTDAEaTAKQIKKSILTEGTQEIERLTASAQAQIVTIeakVRKQISDYVVTLALQRVTTQLEGKLSVNTQQQQN 169
                 4566677777777777777777777777788888888888888888888888833..45555555544044444556777777777777777776666663335556888888888888888888888888888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (171 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       529  (0.128961); expected 82.0 (0.02)
Passed bias filter:                      178  (0.0433935); expected 82.0 (0.02)
Passed Vit filter:                        26  (0.00633837); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.25u 0.16s 00:00:00.41 Elapsed: 00:00:00.43
# Mc/sec: 524.89
//
Query:       MMETSP1137-20121227|2719_1  [L=167]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (167 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        92  (0.0224281); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.19s 00:00:00.38 Elapsed: 00:00:00.36
# Mc/sec: 612.28
//
Query:       MMETSP1137-20121227|2720_1  [L=336]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.6e-36  123.3   0.2    3.2e-36  123.0   0.1    1.1  1  TIGR02280 PaaB1: phenylacetate degradation probable enoyl-CoA hydratase PaaB
    2.1e-33  113.8   0.0    2.9e-33  113.4   0.0    1.0  1  TIGR01929 menB: naphthoate synthase
    1.4e-22   78.1   0.0    1.8e-22   77.7   0.0    1.1  1  TIGR03210 badI: 2-ketocyclohexanecarboxyl-CoA hydrolase
      1e-19   68.2   0.0    1.4e-19   67.8   0.0    1.0  1  TIGR02437 FadB: fatty oxidation complex, alpha subunit FadB
      1e-18   65.4   0.3    1.4e-18   64.9   0.2    1.1  1  TIGR03189 dienoyl_CoA_hyt: cyclohexa-1,5-dienecarbonyl-CoA hydratase
    1.1e-17   61.4   0.0    1.4e-17   61.1   0.0    1.0  1  TIGR02440 FadJ: fatty oxidation complex, alpha subunit FadJ
    4.2e-12   42.8   0.0    5.1e-12   42.5   0.0    1.0  1  TIGR02441 fa_ox_alpha_mit: fatty acid oxidation complex, alpha subunit, mitochondrial
     0.0044   14.0   0.0      0.012   12.6   0.0    1.7  2  TIGR03200 dearomat_oah: 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase


Domain annotation for each model (and alignments):
>> TIGR02280  PaaB1: phenylacetate degradation probable enoyl-CoA hydratase PaaB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  123.0   0.1   6.2e-39   3.2e-36       1     252 [.      78     331 ..      78     335 .. 0.91

  Alignments for each domain:
  == domain 1    score: 123.0 bits;  conditional E-value: 6.2e-39
   TIGR02280   1 illelekgvlrltlnrpdklnsfteemhaelaealerverdd.vrallltGaGrGfcaGqdlsernvtkgaapdlGetvekfynplvrrlaalpkpvvvavnGvaaGaGanlalagdivlaaesakfiqafaklGlipdsGGtwllprlvGrarakglallgekldaetaaewGliwqvvdde.aladevqalaahlakqptrglalikralqaaetnsldtq.ldlerdlqrelGrsadyaeGvaafldkrepe 252
                 il e   g ++ltl rp+  n+f ++  a l ++l+++e+   +ral+l G G  fcaG dl+  +  ++ + +  ++     + ++ rla+lp   ++ v G a G G  l  a+d+ +  ++ak+  + a+lGlip +   ++l r++G a+a+ + l++e+++a +a++ Gl+ +vvdd  +++  + ++ + l +    ++ + k  + + e++ +    ld    l      s + +eGv+afl+kr p 
  MMETSP1137-20121227|2720_1  78 ILKESSPGFITLTLSRPEVHNAFCDRSIASLVDTLSELEKRTdLRALFLRGEGTSFCAGADLGWMRRAANYTKEESHADALVLSGMLHRLASLPFATIALVHGNAFGGGVGLIAACDMAVGVRNAKLALSEARLGLIPATISPYVL-RRIGGAQARRFFLTAERFEATQAEQIGLLNKVVDDVeTMEAWALKIEKALRECAPSAVRAGKELISTVEGKPITPDlLDETAHLLALQRTSEEGREGVSAFLEKRPPF 331
                 677888899****************************987655********************99999998888888888899*************************************************************99.67999******************************834555577899999999999****************987625766778888888999************885 PP

>> TIGR01929  menB: naphthoate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  113.4   0.0   5.6e-36   2.9e-33      12     255 ..      85     331 ..      77     334 .. 0.87

  Alignments for each domain:
  == domain 1    score: 113.4 bits;  conditional E-value: 5.6e-36
   TIGR01929  12 aiakiaidrpkvrnafrpktvdellealddaredsdiGvviltGaGdkafcsGGdq.kvrgksGykdesGesrlnvl.evqrlirtlpkpvialvnGyaiGGGhvlhvvcdltiasenarfgqtgpkvGsfdgGyGsaylarivGqkkareifflcrqydaeeaekmGlvnavve.laeleketvewareilaksplalrllkaalnadldGqaGlqelaGeatllfyl...teeaqeGrdaflekrepd 255
                 +   ++++rp+v+naf  ++++ l+++l++  +++d+  + l G+G  +fc+G d   +r  + y++e+ ++   vl  + + + +lp + ialv G a GGG  l   cd+++   na++  +++++G   +   s y+ r +G  +ar  f+++ +++a++ae++Gl+n+vv+ ++ +e  ++++ + + + +p a+r  k  +   ++G+    +l  e++ l+ l   +ee++eG +aflekr+p 
  MMETSP1137-20121227|2720_1  85 GFITLTLSRPEVHNAFCDRSIASLVDTLSELEKRTDLRALFLRGEGT-SFCAGADLgWMRRAANYTKEESHADALVLsGMLHRLASLPFATIALVHGNAFGGGVGLIAACDMAVGVRNAKLALSEARLGLIPATI-SPYVLRRIGGAQARRFFLTAERFEATQAEQIGLLNKVVDdVETMEAWALKIEKALRECAPSAVRAGKELI-STVEGKPITPDLLDETAHLLALqrtSEEGREGVSAFLEKRPPF 331
                 567799***************************************95.7******725788888988777665555526888899********************************************999876.89************************************736789*********************99866.56778777766666665554432227999************96 PP

>> TIGR03210  badI: 2-ketocyclohexanecarboxyl-CoA hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.7   0.0   3.5e-25   1.8e-22       3     251 ..      77     330 ..      75     334 .. 0.88

  Alignments for each domain:
  == domain 1    score: 77.7 bits;  conditional E-value: 3.5e-25
   TIGR03210   3 dilyevrngvatiiinraeklnafrgrtcdelikalkkagydreigvivlagagdkafctggdqs..thdgnydgr..gviglpveelhsairdvakpviarvqgyaigggnvlvticdltiasekavlgqvgpkvgsvdpgygtallarvvgekkareiwylcrrysakealamglvnavvph.dqldaevkkwcdeiveksptalaiakrsfn.vdta.hqagiaglgmyalklyydteesregvkalqekrkp 251
                  il e   g  t+++ r+e  naf  r+   l+++l + +   ++ ++ l g g  +fc+g d +   +  ny      +  l +  +   +  ++   ia v+g a ggg  l++ cd+++   +a l     ++g + p   + ++ r +g  +ar  +  + r+ a +a+ +gl n vv   + ++a   k  + + e +p+a+   k  +  v+ +     +   + + l l   +ee regv a+ ekr p
  MMETSP1137-20121227|2720_1  77 HILKESSPGFITLTLSRPEVHNAFCDRSIASLVDTLSELEKRTDLRALFLRGEGT-SFCAGADLGwmRRAANYTKEesHADALVLSGMLHRLASLPFATIALVHGNAFGGGVGLIAACDMAVGVRNAKLALSEARLGLI-PATISPYVLRRIGGAQARRFFLTAERFEATQAEQIGLLNKVVDDvETMEAWALKIEKALRECAPSAVRAGKELIStVEGKpITPDLLDETAHLLALQRTSEEGREGVSAFLEKRPP 330
                 68899999********************************************995.8******87334567786551155689999***************************************************88.566677888889999**************************9753889********************9998765144441345677889999*********************88 PP

>> TIGR02437  FadB: fatty oxidation complex, alpha subunit FadB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.8   0.0   2.7e-22   1.4e-19      16     203 ..      85     271 ..      78     284 .. 0.87

  Alignments for each domain:
  == domain 1    score: 67.8 bits;  conditional E-value: 2.7e-22
   TIGR02437  16 giaelvfdapgsvnkldratlasldkaldalkaqsdlkgllltsdkdafivGaditeflelfakpeeellqwleeansvfnkledlpvptvaavkGfalGGGlevvlatdfriadktakiGlpetklGilpGfGGtvrlprliGadsaleiiaaGkevraedalkvglvdavvka.ekleaaalqllkd 203
                 g + l+++ p+  n +   ++asl ++l  l++++dl++l+l+ +  +f  Gad+  +    +  +ee ++       ++ +l  lp+ t+a v+G a+GGG+ ++ a+d+ ++ ++ak+ l e++lG++p       l r+ G  +a  +  + +   a +a ++gl++ vv+  e +ea al+ +++
  MMETSP1137-20121227|2720_1  85 GFITLTLSRPEVHNAFCDRSIASLVDTLSELEKRTDLRALFLRGEGTSFCAGADLGWMRRAANYTKEESHADALVLSGMLHRLASLPFATIALVHGNAFGGGVGLIAACDMAVGVRNAKLALSEARLGLIPATISPYVLRRI-GGAQARRFFLTAERFEATQAEQIGLLNKVVDDvETMEAWALK-IEK 271
                 6677888999999******************************************99888777777788888888899*****************************************************99888777665.556778888888999***************862555555554.444 PP

>> TIGR03189  dienoyl_CoA_hyt: cyclohexa-1,5-dienecarbonyl-CoA hydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.9   0.2   2.8e-21   1.4e-18       6     249 ..      81     333 ..      77     335 .. 0.79

  Alignments for each domain:
  == domain 1    score: 64.9 bits;  conditional E-value: 2.8e-21
   TIGR03189   6 erdgkllrlrlarpka.nivdaamiaalraalgealeaaalravlldaegphfsfgasv......eehmpdqcaamlkslhklviemldspvpilvavrgqclggglevaaagnllfaapdaklgqpeiklgvfapaascllpervgkvaaedllysgrsidgaegariglvdavaedpeaa.alayfdehlaklsasslrfavra..arlgvvervkakiaevealyleelmathdaveglnaflekrpaawe 249
                 e    ++ l l+rp   n      ia+l  +l+e  + + lra++l  eg  f  ga +      +++  ++  a    l +++ ++   p   +  v g+ +ggg+ ++aa ++     +akl   e +lg++  + s  +  r+g + a  ++ +    +++++ +igl++ v++d e+  a a   e+  +  a s   a +   + ++ ++ +   ++e     l    ++ +  eg+ aflekrp  w 
  MMETSP1137-20121227|2720_1  81 ESSPGFITLTLSRPEVhNAFCDRSIASLVDTLSELEKRTDLRALFLRGEGTSFCAGADLgwmrraANYTKEESHADALVLSGMLHRLASLPFATIALVHGNAFGGGVGLIAACDMAVGVRNAKLALSEARLGLIPATISPYVLRRIGGAQARRFFLTAERFEATQAEQIGLLNKVVDDVETMeAWALKIEKALRECAPSAVRAGKEliSTVEGKPITPDLLDETA-HLLALQRTSEEGREGVSAFLEKRPPFWA 333
                 5555678999****8637777789********************************9862222224566666666666788888999999********************************************999*****************************************99752555555666666665533333321123333444444455443.334555678899*************997 PP

>> TIGR02440  FadJ: fatty oxidation complex, alpha subunit FadJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.1   0.0   2.7e-20   1.4e-17      32     200 ..     106     275 ..      79     315 .. 0.79

  Alignments for each domain:
  == domain 1    score: 61.1 bits;  conditional E-value: 2.7e-20
   TIGR02440  32 dqvaeilkqlkekkelrglvlvsgkpdsfiagadisml..aacktadeakalaqkgqellaelealpikvvaaihgaclggglelalachsrvcsdddktvlglpevqlgllpgsggtqrlprlvgvskaldmiltgkqlrakqalklglvddvvpksilldv.a..velakkg 200
                   + + l++l+++++lr l  + g   sf agad+  +  aa  t +e++a a     +l +l++lp+  +a +hg  +ggg+ l  ac   v   + k  l l e +lgl+p +     l r +g ++a  ++lt  ++ a qa ++gl+++vv     +++ a  +e+a+++
  MMETSP1137-20121227|2720_1 106 ASLVDTLSELEKRTDLRALF-LRGEGTSFCAGADLGWMrrAANYTKEESHADALVLSGMLHRLASLPFATIALVHGNAFGGGVGLIAACDMAVGVRNAK--LALSEARLGLIPATISPYVL-RRIGGAQARRFFLTAERFEATQAEQIGLLNKVVDDVETMEAwAlkIEKALRE 275
                 456788999********985.67999*********866334667888888888888889**********************************998876..8899********99988777.558999**************************98765555423113334433 PP

>> TIGR02441  fa_ox_alpha_mit: fatty acid oxidation complex, alpha subunit, mitochondrial
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.5   0.0     1e-14   5.1e-12      23     199 ..      86     259 ..      65     291 .. 0.80

  Alignments for each domain:
  == domain 1    score: 42.5 bits;  conditional E-value: 1e-14
   TIGR02441  23 vavvkidspnskvntlskelsaefkevldeletneavksavlisskpgsfvaGadidml..kacktaeevtqlsreaqklleklekskkpivaaisGsclGGGlelalachyriatkdkktllglpevllGllpGaGgtqrlpklvsvpaaldleltGkkikadrakklGlvdrlvdpl 199
                  + + +  p+   n++  +  a + ++l ele    +++ +++ +  +sf aGad++ +  +a  t ee    +     +l++l       +a ++G  +GGG+ l  ac+  + +++  ++l+l e  lGl+p + +   l ++ + +a   + lt  + +a +a ++Gl++++vd +
  MMETSP1137-20121227|2720_1  86 FITLTLSRPEVH-NAFCDRSIASLVDTLSELEKRTDLRA-LFLRGEGTSFCAGADLGWMrrAANYTKEESHADALVLSGMLHRLASLPFATIALVHGNAFGGGVGLIAACDMAVGVRN--AKLALSEARLGLIPATISPYVLRRIGGAQA-RRFFLTAERFEATQAEQIGLLNKVVDDV 259
                 555556666554.5566666678889999**99999986.567999**********97733456677777777777889*******************************98777765..568889**************9*99988775.6899*********************976 PP

>> TIGR03200  dearomat_oah: 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0      0.59     3e+02     118     136 ..      17      35 ..      13      40 .. 0.82
   2 !   12.6   0.0   2.3e-05     0.012      41     213 ..      89     259 ..      50     269 .. 0.78

  Alignments for each domain:
  == domain 1    score: -1.9 bits;  conditional E-value: 0.59
   TIGR03200 118 sailgcdkpvicrvngmri 136
                 sa  gcd+p i r  g  i
  MMETSP1137-20121227|2720_1  17 SAEHGCDRPLIQRCAGRMI 35 
                 67789********999766 PP

  == domain 2    score: 12.6 bits;  conditional E-value: 2.3e-05
   TIGR03200  41 iildnpkqynsyttdmvkaiilafrrassdrdvaavvftavgdkafctggntkeyaeyyagnpqeyrqymrlfndmvsailgcdkpvicrvngmrigggqeigmaadlsvaqdlakfgqagpkhgsaaiggatdflplmigceqamvsgtlcepfsahkakrlgiivdvvpal 213
                 ++l  p  +n++    + +++ ++ +     d+ a  + + g  +fc+g +            +e +    ++  m+  + +   ++i+ v g   ggg  +  a+d++v    ak+  +  + g  +   +   l   ig  qa     + e f a +a++ g++ +vv  +
  MMETSP1137-20121227|2720_1  89 LTLSRPEVHNAFCDRSIASLVDTLSELEKRTDLRALFLRGEG-TSFCAGADLGWMRRAANYTKEESHADALVLSGMLHRLASLPFATIALVHGNAFGGGVGLIAACDMAVGVRNAKLALSEARLGLIPATISPYVL-RRIGGAQARRFFLTAERFEATQAEQIGLLNKVVDDV 259
                 456778888888888888888888888888888877777766.589999876433222222334444555667899*************************************************99988776555.6789999999999*****************999755 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (336 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       112  (0.0273038); expected 82.0 (0.02)
Passed bias filter:                      104  (0.0253535); expected 82.0 (0.02)
Passed Vit filter:                        23  (0.00560702); expected 4.1 (0.001)
Passed Fwd filter:                         8  (0.00195027); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.35u 0.12s 00:00:00.47 Elapsed: 00:00:00.48
# Mc/sec: 923.92
//
Query:       MMETSP1137-20121227|2721_1  [L=348]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.3e-09   34.1   0.0      0.013   12.4   0.0    3.6  3  TIGR00414 serS: serine--tRNA ligase


Domain annotation for each model (and alignments):
>> TIGR00414  serS: serine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.2   0.0   3.6e-06     0.015       5      71 ..       9      74 ..       5      90 .. 0.81
   2 !   12.4   0.0   3.1e-06     0.013      50     120 ..      99     172 ..      81     182 .. 0.76
   3 !    5.1   0.0   0.00051       2.1     233     260 ..     261     288 ..     202     293 .. 0.65

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 3.6e-06
   TIGR00414  5 kllrenlelvkeklkarglsveidleklselddklkkllskieelqkkrnelskeigkkkaekkdki 71
                + l  ++ +++e++++rg+ v   + +++++d+k++ +l  ++e+++k+ ++  ++++++a++++ +
  MMETSP1137-20121227|2721_1  9 SSLGGDPRVLEESQHRRGADVG-LIRRIVAVDEKWRVALRAVDEARAKHRSIWTQVQQARARQRAAA 74
                667889999*****99999666.59*********************************888877653 PP

  == domain 2    score: 12.4 bits;  conditional E-value: 3.1e-06
   TIGR00414  50 qkkrnelskeigk.kkaekkdk..ieelkkelkelkeeleeleaelkeleeeleekllkipnlvaesvpvgkde 120
                 ++ ++ + k++ + +  ++++   ++ l +e+k+ + e+ +le++ ++l++el  +ll+++ lv+e+ p++  +
  MMETSP1137-20121227|2721_1  99 EEAETVNCKALIEaAASNGNSVvsVDGLAAESKQIDAEIGRLESAEQQLKAELFALLLQVGCLVHEDAPLAGAP 172
                 544444555544424444444333677******************************************97655 PP

  == domain 3    score: 5.1 bits;  conditional E-value: 0.00051
   TIGR00414 233 aEvplanlhaneileeeelpikyaavsp 260
                  + pl +lha ++l+ +elp+ky+ vs+
  MMETSP1137-20121227|2721_1 261 NDSPLGALHACDWLQRKELPLKYVYVSA 288
                 467999****************998875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (348 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        91  (0.0221843); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.29u 0.15s 00:00:00.43 Elapsed: 00:00:00.36
# Mc/sec: 1275.89
//
Query:       MMETSP1137-20121227|2722_1  [L=231]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.7e-07   27.8   0.0     0.0023   15.4   0.0    2.1  2  TIGR01262 maiA: maleylacetoacetate isomerase


Domain annotation for each model (and alignments):
>> TIGR01262  maiA: maleylacetoacetate isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.4   0.0   1.9e-05      0.08      48      96 ..      58     104 ..      45     112 .. 0.85
   2 !   15.4   0.0   5.5e-07    0.0023     127     201 ..     146     226 ..     133     230 .. 0.75

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 1.9e-05
   TIGR01262  48 PqelvPtLkidegevltqSlAiieyLeetypepaLlpkdpakrarvral 96 
                  ++++P L+id g  ++qS A++ +      + +L p+dp +r +v ++
  MMETSP1137-20121227|2722_1  58 KSGQLPLLTID-GMEVSQSAAMLRWAGS-LGDGSLYPADPMQRLKVDEM 104
                 5789*******.69***********765.66799*********999876 PP

  == domain 2    score: 15.4 bits;  conditional E-value: 5.5e-07
   TIGR01262 127 kkewlkhwiekGlaalEellkekagafcvGdevtladvcLvpqvy.....nAerfevd.laqyPtlkrieealaelpafqe 201
                 +++++k+ + + ++ +   ++++ g +  G +vt+ad+ + pqv       A ++  d l++yP +k+  e++ ++pa++e
  MMETSP1137-20121227|2722_1 146 RENFIKDTLPRFMKYIADAITASGGPYLCGSTVTIADLAMLPQVRyfgkgVADHVPKDtLDPYPEVKAWIEKIMTIPAVKE 226
                 556666666666666777788999********************72222234444333499*******9999999999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (231 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        87  (0.0212092); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.21u 0.18s 00:00:00.39 Elapsed: 00:00:00.36
# Mc/sec: 846.93
//
Query:       MMETSP1137-20121227|2723_1  [L=618]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (618 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       115  (0.0280351); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.18s 00:00:00.58 Elapsed: 00:00:00.56
# Mc/sec: 1431.04
//
Query:       MMETSP1137-20121227|2724_1  [L=362]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.6e-25   87.5   0.0    2.7e-13   48.0   0.0    2.1  2  TIGR00229 sensory_box: PAS domain S-box protein
    8.7e-23   78.4   0.0    5.7e-12   42.7   0.0    2.1  2  TIGR02938 nifL_nitrog: nitrogen fixation negative regulator NifL


Domain annotation for each model (and alignments):
>> TIGR00229  sensory_box: PAS domain S-box protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.5   0.0   2.3e-13   4.7e-10      18     114 ..      24     120 ..       9     121 .. 0.88
   2 !   48.0   0.0   1.3e-16   2.7e-13      17     114 ..     262     359 ..     257     362 .] 0.87

  Alignments for each domain:
  == domain 1    score: 37.5 bits;  conditional E-value: 2.3e-13
   TIGR00229  18 iivvdeeGnilyvNrafeeifGYsaeeliGrnvlelipeedreevrerierrlegerepvseerrvkrkdGseiwvevsvspird.aggelgvvgivr 114
                 i  + +  +i+++N+a+ e++GY+  e++G++   l  ++ ++++ er+  +++  +++v  ++ +++k+G+   v++s sp+   +g+++ ++g++r
  MMETSP1137-20121227|2724_1  24 ITSAISPFKIVHTNKAWSELTGYAFTEVVGKSCDFLNGPHTEQKTLERLGDCIR-AKKTVTVQVIYYKKSGQPLSVRLSCSPVLRsDGTVTNMLGVLR 120
                 555667789*********************************************.558888888889****************999*****9999876 PP

  == domain 2    score: 48.0 bits;  conditional E-value: 1.3e-16
   TIGR00229  17 aiivvdeeGnilyvNrafeeifGYsaeeliGrnvle.lipeedreevrerierrlegerepvseerrvkrkdGseiwvevsvspird.aggelgvvgivr 114
                  i   d   ni+++N a++e+ GY+aee++G++  +   pe d  ++ e+++  ++ e ++v + +++ +k G+++  +v+vsp++d +++++++++++ 
  MMETSP1137-20121227|2724_1 262 VITAKDPPYNIIHANXAWCELCGYEAEEVEGKTNKIlTGPETDPAQLNELMRAVRRCE-PTVHTLVNY-KKGGKRFVNQVHVSPLYDeNKDVVAFMAHLT 359
                 5667777889**************************6668888999999999999954.777778887.*************************999876 PP

>> TIGR02938  nifL_nitrog: nitrogen fixation negative regulator NifL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.7   0.0   1.5e-12   3.1e-09      25     113 ..      32     120 ..      10     127 .. 0.92
   2 !   42.7   0.0   2.8e-15   5.7e-12      12     110 ..     258     356 ..     253     362 .] 0.93

  Alignments for each domain:
  == domain 1    score: 33.7 bits;  conditional E-value: 1.5e-12
   TIGR02938  25 nilyanaafseitGyakeeviGknesvlsnrttPpevyqalwgslaekkPwaGkllnrrkdgelylaeltvaPvlneaGetthflGmhr 113
                  i+++n+a+se+tGya  ev+Gk    l    t ++    l +++  kk  + +++  +k g+     l+ +Pvl   G+ t  lG+ r
  MMETSP1137-20121227|2724_1  32 KIVHTNKAWSELTGYAFTEVVGKSCDFLNGPHTEQKTLERLGDCIRAKKTVTVQVIYYKKSGQPLSVRLSCSPVLRSDGTVTNMLGVLR 120
                 699***********************************************************************************987 PP

  == domain 2    score: 42.7 bits;  conditional E-value: 2.8e-15
   TIGR02938  12 qapvaisitdlkanilyanaafseitGyakeeviGknesvlsnrttPpevyqalwgslaekkPwaGkllnrrkdgelylaeltvaPvlneaGetthflG 110
                 q  v i+  d   ni++an a+ e+ Gy  eev Gk + +l+   t p    +l +++ + +P    l+n +k g++++ ++ v+P+ +e  + + f+ 
  MMETSP1137-20121227|2724_1 258 QGAVVITAKDPPYNIIHANXAWCELCGYEAEEVEGKTNKILTGPETDPAQLNELMRAVRRCEPTVHTLVNYKKGGKRFVNQVHVSPLYDENKDVVAFMA 356
                 4567777789999*****************************************************************************999999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (362 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        95  (0.0231594); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.30u 0.17s 00:00:00.47 Elapsed: 00:00:00.40
# Mc/sec: 1194.50
//
Query:       MMETSP1137-20121227|2725_1  [L=673]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00098   16.5   0.0     0.0029   15.0   0.0    1.7  1  TIGR00633 xth: exodeoxyribonuclease III (xth)
  ------ inclusion threshold ------
      0.024   12.1   0.0      0.065   10.7   0.0    1.8  1  TIGR00195 exoDNase_III: exodeoxyribonuclease III


Domain annotation for each model (and alignments):
>> TIGR00633  xth: exodeoxyribonuclease III (xth)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   1.4e-06    0.0029      19     128 ..     245     390 ..     239     421 .. 0.62

  Alignments for each domain:
  == domain 1    score: 15.0 bits;  conditional E-value: 1.4e-06
   TIGR00633  19 flellkeekpDvlclQEtKvae.eqlpkelleeegYevafssakkk......gysGvallskeepesvr.vgigaeeedeegr............................vitaefdeltvvnvYvPngeardlerleyklefwe 128
                 +l+ l ++++D++clQE+ + + e++ + +l++ +Y   +++++++      +  G a+l+++   s+   g+   e+++  r                               ++  ++ v n+ +  + + d+ +l + ++ + 
  MMETSP1137-20121227|2725_1 245 ILSELINYRADIMCLQEVQADHfENFLEPELAKYNYAGLHKCKTREfmgrygKMDGCAILYRRDKFSIVpGGVHDVEFNTIARlrhgsdkrllnrllkdnvaqvlllemiaPHPSTRRQVLVANTHINASPEFDDVKLWQTQHLLL 390
                 567778899***********99999999999******9999999889976766789999999665554404555544444333344444446666555555555555422222234455555555555555555555555555555 PP

>> TIGR00195  exoDNase_III: exodeoxyribonuclease III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   3.2e-05     0.065      15      62 ..     242     294 ..     239     420 .. 0.78

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 3.2e-05
   TIGR00195  15 lkklleflkeekpDvlclqEtkvad.eqfpkelvekegYhvffsga....kgy 62 
                  +++l+ l ++++D++clqE+++ + e+f + + +k +Y   ++++     g+
  MMETSP1137-20121227|2725_1 242 RRNILSELINYRADIMCLQEVQADHfENFLEPELAKYNYAGLHKCKtrefMGR 294
                 56778888999**********99764777777889999998888876555343 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (673 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        78  (0.0190151); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.15s 00:00:00.60 Elapsed: 00:00:00.39
# Mc/sec: 2277.66
//
Query:       MMETSP1137-20121227|2726_1  [L=231]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (231 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       196  (0.0477816); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.16s 00:00:00.38 Elapsed: 00:00:00.28
# Mc/sec: 1051.36
//
Query:       MMETSP1137-20121227|2727_1  [L=38]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (38 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        79  (0.0192589); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.15s 00:00:00.26 Elapsed: 00:00:00.25
# Mc/sec: 200.62
//
Query:       MMETSP1137-20121227|2728_1  [L=335]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (335 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       175  (0.0426621); expected 82.0 (0.02)
Passed bias filter:                      102  (0.0248659); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.14s 00:00:00.40 Elapsed: 00:00:00.41
# Mc/sec: 1078.45
//
Query:       MMETSP1137-20121227|2729_1  [L=122]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (122 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        33  (0.00804486); expected 82.0 (0.02)
Passed bias filter:                       31  (0.00755729); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.16s 00:00:00.31 Elapsed: 00:00:00.30
# Mc/sec: 536.76
//
Query:       MMETSP1137-20121227|2731_1  [L=232]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      7e-05   20.1   0.0    8.8e-05   19.8   0.0    1.2  1  TIGR03516 ppisom_GldI: peptidyl-prolyl isomerase, gliding motility-associated
     0.0045   13.7   0.0     0.0063   13.2   0.0    1.1  1  TIGR00115 tig: trigger factor
  ------ inclusion threshold ------
      0.033   12.5   2.5      0.078   11.3   1.8    1.6  1  TIGR01409 TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence


Domain annotation for each model (and alignments):
>> TIGR03516  ppisom_GldI: peptidyl-prolyl isomerase, gliding motility-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   0.0   6.4e-08   8.8e-05      60     163 ..     110     212 ..      72     224 .. 0.88

  Alignments for each domain:
  == domain 1    score: 19.8 bits;  conditional E-value: 6.4e-08
   TIGR03516  60 sevkyetskkGfwyaykkkdttetktpetgDlvsfeyeikaldgdviyskeelg.pktykvdqedlisGlrdglklmkegeevtfllPsykayGyyGdedkigsn 163
                   ++++ s++G  y + +   +e+  p  g +v+ +y    ldg+   s  ++g p  +++ + ++i+G    +  m+ g +v++ +P + ayG     + i + 
  MMETSP1137-20121227|2731_1 110 FFKDFKMSESGISYKFLRM--GEGDKPVPGQRVYVHYAGYLLDGKKFDSSYDIGkPFSFRLGKGKVITGWEAVVGGMRPGMQVVVRIPPQYAYGDKAVGNVIPPS 212
                 55789***********975..66778999************************945789**********************************976666666555 PP

>> TIGR00115  tig: trigger factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   0.0   4.6e-06    0.0063     152     206 ..     137     194 ..     126     206 .. 0.85

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 4.6e-06
   TIGR00115 152 gDivtidfeg.kvdGeafeggka..edfelelgsgqfipgfeeqlvGmkaGeekeikv 206
                 g +v + ++g   dG++f++     + f++ lg+g++i g e  + Gm  G ++++ +
  MMETSP1137-20121227|2731_1 137 GQRVYVHYAGyLLDGKKFDSSYDigKPFSFRLGKGKVITGWEAVVGGMRPGMQVVVRI 194
                 78999*****667******98544499************************9998876 PP

>> TIGR01409  TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   1.8   5.7e-05     0.078       1      26 [.      64      89 ..      64      92 .. 0.81

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 5.7e-05
   TIGR01409  1 lsRRdFLkaaaaagaaaglglllpsp 26
                lsRR+ L++aaa  ++++ ++ l+  
  MMETSP1137-20121227|2731_1 64 LSRRRVLGGAAASLVSVAMSTQLVEA 89
                7****************998744555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (232 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        69  (0.0168211); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.22u 0.14s 00:00:00.36 Elapsed: 00:00:00.38
# Mc/sec: 805.83
//
Query:       MMETSP1137-20121227|2732_1  [L=207]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (207 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        85  (0.0207216); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.17s 00:00:00.37 Elapsed: 00:00:00.36
# Mc/sec: 758.94
//
Query:       MMETSP1137-20121227|2733_1  [L=190]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (190 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        71  (0.0173086); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.10s 00:00:00.28 Elapsed: 00:00:00.73
# Mc/sec: 343.53
//
Query:       MMETSP1137-20121227|2734_1  [L=223]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.039   11.9   1.0        1.2    7.2   0.0    2.6  2  TIGR02605 CxxC_CxxC_SSSS: putative regulatory protein, FmdB family


Domain annotation for each model (and alignments):
>> TIGR02605  CxxC_CxxC_SSSS: putative regulatory protein, FmdB family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   0.0   0.00028       1.2       4      14 ..     131     141 ..     130     147 .. 0.85
   2 ?    2.7   0.1    0.0073        30       6      26 ..     157     182 ..     156     185 .. 0.71

  Alignments for each domain:
  == domain 1    score: 7.2 bits;  conditional E-value: 0.00028
   TIGR02605   4 YeYrCtaCghe 14 
                  e+rC++Cg +
  MMETSP1137-20121227|2734_1 131 HEFRCDKCGFT 141
                 59*******75 PP

  == domain 2    score: 2.7 bits;  conditional E-value: 0.0073
   TIGR02605   6 YrCt....aCghefevlqkmsd.dpl 26 
                 Y+C+    +C+ + e++  m+d +++
  MMETSP1137-20121227|2734_1 157 YKCQnpsgKCDATKEDFFDMTDlSDP 182
                 66653333799999999999997554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (223 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       117  (0.0285227); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.20u 0.14s 00:00:00.34 Elapsed: 00:00:00.35
# Mc/sec: 840.96
//
Query:       MMETSP1137-20121227|2735_1  [L=596]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (596 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        56  (0.0136519); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.15s 00:00:00.53 Elapsed: 00:00:00.40
# Mc/sec: 1966.64
//
Query:       MMETSP1137-20121227|2737_1  [L=64]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        91  (0.0221843); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.14s 00:00:00.26 Elapsed: 00:00:00.27
# Mc/sec: 312.86
//
Query:       MMETSP1137-20121227|2738_1  [L=357]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (357 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        61  (0.0148708); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.16s 00:00:00.41 Elapsed: 00:00:00.34
# Mc/sec: 1385.89
//
Query:       MMETSP1137-20121227|2739_1  [L=251]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.7e-81  270.5   1.0    2.9e-81  270.4   0.7    1.0  1  TIGR02311 HpaI: 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase
      4e-71  237.3   0.4    4.4e-71  237.2   0.3    1.0  1  TIGR03239 GarL: 2-dehydro-3-deoxyglucarate aldolase


Domain annotation for each model (and alignments):
>> TIGR02311  HpaI: 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  270.4   0.7   1.4e-84   2.9e-81       1     248 [.       2     250 ..       2     251 .] 0.96

  Alignments for each domain:
  == domain 1    score: 270.4 bits;  conditional E-value: 1.4e-84
   TIGR02311   1 nkfkqalkekk..aqiGlwlgladsyaaeivagaGfdwllldgehapndvrtllsqlqalasyassPvvrpaigdtvlikrlldiGaqtllvPmvesaeqaeaavkavryPPkGirGvgsalarasrfnripdylqqadeeiclllqvetrealenleeiaaveGvdGvfiGPadlaaslGhlGnPshpevqdaiedaierikaagkaaGiltadeklakkylklGalfvavGvdttllaraaealaakf 248
                 n++k++l +    +   +wl+la++ a+e++agaGf  +++d+ehapnd+++   q+ a   + +s + r+ i+++++ikrl+d+Gaq +lvPm+++aeqaeaa +a r+PP+G rGv +a +ra+ ++r p+yl  a+e+ cl+ q+et  a+en+e+iaav+Gv+ +fiGP+dl+as GhlGnPs+p v++ ie+ai+ri a+gk+ Gi+  d++ a++y+++G+++vav  d++ll+++a+ +  kf
  MMETSP1137-20121227|2739_1   2 NRLKAKLVAADagPITCVWLSLASEMATELLAGAGFGSVVIDTEHAPNDISQTRLQIMAAELKGCSVIARTPINEPWVIKRLMDVGAQNILVPMIDTAEQAEAAAAALRFPPEGTRGV-AASTRAADYGRAPNYLTSANEQACLIAQIETLVAVENIEAIAAVDGVNALFIGPSDLSASAGHLGNPSAPMVESVIENAIRRIVATGKPCGIFCFDPQKANTYIEMGVRLVAVASDVSLLVAGARLIQSKF 250
                 677888766541157889**********************************99999888889999****************************************************.999*************************************************************************************************************************9888877 PP

>> TIGR03239  GarL: 2-dehydro-3-deoxyglucarate aldolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  237.2   0.3   2.2e-74   4.4e-71       1     247 [.       2     250 ..       2     251 .] 0.96

  Alignments for each domain:
  == domain 1    score: 237.2 bits;  conditional E-value: 2.2e-74
   TIGR03239   1 nrfrqkllarkt..liglwsalgnpitaevlglagfdwllldgehapndvltlipqlmalkdsasapvvrvplnepviikrlldigfynllipfvesaeeaeravaatryppegirgvsvaqrsnrygtvadyfkkindnitvlvqiesrkgvdavdeiaavdgvdgvfvgpsdlaaalgylgnpnhpdvqkairhifdraaahgkavgilapveadarrylelgatfvavgsdlgvfrsatkalsekf 247
                 nr+++kl+a +   +  +w++l++++++e+l  agf  +++d+ehapnd+++   q+ma +      ++r+p+nep +ikrl+d+g  n+l+p++++ae+ae a aa r+ppeg rgv+++ r+  yg  ++y+ + n++ +++ qie+   v+++++iaavdgv+++f+gpsdl+a+ g+lgnp+ p v+ +i++ + r+ a gk++gi++     a  y+e+g ++vav sd +++   ++ ++ kf
  MMETSP1137-20121227|2739_1   2 NRLKAKLVAADAgpITCVWLSLASEMATELLAGAGFGSVVIDTEHAPNDISQTRLQIMAAELKGCSVIARTPINEPWVIKRLMDVGAQNILVPMIDTAEQAEAAAAALRFPPEGTRGVAASTRAADYGRAPNYLTSANEQACLIAQIETLVAVENIEAIAAVDGVNALFIGPSDLSASAGHLGNPSAPMVESVIENAIRRIVATGKPCGIFCFDPQKANTYIEMGVRLVAVASDVSLLVAGARLIQSKF 250
                 788888877664325567*****************************************9999999**************************************************************************************************************************************************99999*********************99999988888 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (251 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       132  (0.0321794); expected 82.0 (0.02)
Passed bias filter:                      112  (0.0273038); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.25u 0.17s 00:00:00.42 Elapsed: 00:00:00.28
# Mc/sec: 1142.39
//
Query:       MMETSP1137-20121227|2740_1  [L=335]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (335 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       228  (0.0555826); expected 82.0 (0.02)
Passed bias filter:                      146  (0.0355924); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.16s 00:00:00.47 Elapsed: 00:00:00.48
# Mc/sec: 921.17
//
Query:       MMETSP1137-20121227|2741_1  [L=113]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (113 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        90  (0.0219405); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.17s 00:00:00.33 Elapsed: 00:00:00.26
# Mc/sec: 573.64
//
Query:       MMETSP1137-20121227|2742_1  [L=345]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (345 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        58  (0.0141394); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.12s 00:00:00.38 Elapsed: 00:00:00.43
# Mc/sec: 1058.98
//
Query:       MMETSP1137-20121227|2743_1  [L=1050]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0016   14.0  48.9     0.0028   13.2  33.9    1.4  1  TIGR00927 2A1904: K+-dependent Na+/Ca+ exchanger


Domain annotation for each model (and alignments):
>> TIGR00927  2A1904: K+-dependent Na+/Ca+ exchanger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2  33.9   6.9e-07    0.0028     715    1002 ..     740    1029 ..     634    1045 .. 0.63

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 6.9e-07
   TIGR00927  715 eeepaklpevtvtpap........apedkgdqeedpgsqgdvaeaeakgertgeeaeaeteaegekdeesggeaeqegeseekaeeeseGeieaerkgedegegeieakeaevkGeeeeeeveaeeeteaeGd.edegeieaeeeGeekededegeieakeevevegdedeteieaeeeaevkededeGeieaeedgevkGdegeeqkveaeeeeeedekdegeedeeeiaddeevkdetgeqelnaenq.gea.kedekGvdgeggsdGGdseeeeeeeeeeeeeeeeeeeeeeeeee 1002
                   +e  kl + ++ p p          e kgd+++d g ++d ++ e   +  +++ + e+e+ ++ ++ +++e+++++++++   +e++ + + +  ++d+++g  +a+ a+v G  + + + a  ++ea  + e     +a+++G   + +  + ++a     +e+d++ +     +++  k +   Ge +      ++G++ + +++ + + +++    +     +e+++++++ de   + +  ++  ge   + e+ v +e++ +G + +e+e e ee+  ee eee ee+ ee+
  MMETSP1137-20121227|2743_1  740 SQERLKLGSYVIGPKPprrsssiiKKERKGDEDDDVGGDDDDDDDEYDDDDDDDDDDDESETASN-SKGGDNENDDDDDGQDDDADEDDDDYDDDDDDDDDDDGVEKAEGADVVGA-DRSRLGAAADAEARVApESGTARQAGASGAAADAD--ASADA-----SEADRQAAADGPVKDGLRKIHASVGEKKQLRPDAMQGKDAARKAASTPQPRDAMLPPDAAAPAGEQSSGSGCSDEAAAATVDGDDAdGEGiDDAEDDVWDEEELEGEEWDEDELEGEEDWGEEGEEEWEEDGEEN 1029
                  45555666555555542222211135789999999999988888777776666665555333222.22222222233333344445566677777788888889899999999998.66666666555555430333344555555544443..33333.....445554444444556666667777887777778888888888777777777777777777777777777777777777766665431343133455666666666666555554444432233222222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1050 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       242  (0.0589956); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.76u 0.18s 00:00:00.94 Elapsed: 00:00:00.70
# Mc/sec: 1979.84
//
Query:       MMETSP1137-20121227|2744_1  [L=335]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (335 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       114  (0.0277913); expected 82.0 (0.02)
Passed bias filter:                      100  (0.0243784); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.18s 00:00:00.43 Elapsed: 00:00:00.34
# Mc/sec: 1300.48
//
Query:       MMETSP1137-20121227|2745_1  [L=530]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      3e-54  182.1   0.0    3.8e-54  181.7   0.0    1.0  1  TIGR01804 BADH: betaine aldehyde dehydrogenase
    1.1e-45  154.0   0.0    1.5e-45  153.5   0.0    1.0  1  TIGR02299 HpaE: 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase
    1.6e-44  150.3   0.0    2.2e-44  149.9   0.0    1.0  1  TIGR01780 SSADH: succinate-semialdehyde dehydrogenase
    5.3e-44  148.4   0.0    7.2e-44  148.0   0.0    1.1  1  TIGR03216 OH_muco_semi_DH: 2-hydroxymuconic semialdehyde dehydrogenase
    1.9e-41  140.1   0.0    2.5e-41  139.7   0.0    1.0  1  TIGR01722 MMSDH: methylmalonate-semialdehyde dehydrogenase (acylating)
    2.1e-41  139.9   0.0    2.8e-41  139.5   0.0    1.1  1  TIGR03250 PhnAcAld_DH: putative phosphonoacetaldehyde dehydrogenase
    6.1e-41  138.5   0.0    7.8e-41  138.2   0.0    1.0  1  TIGR03374 ABALDH: 1-pyrroline dehydrogenase
    1.1e-39  134.4   0.0    1.4e-39  134.1   0.0    1.1  1  TIGR01237 D1pyr5carbox2: putative delta-1-pyrroline-5-carboxylate dehydrogenase
    1.4e-35  120.8   0.0    2.1e-35  120.3   0.0    1.1  1  TIGR03240 arg_catab_astD: succinylglutamic semialdehyde dehydrogenase
      1e-27   94.7   0.0    1.3e-27   94.3   0.0    1.1  1  TIGR01238 D1pyr5carbox3: delta-1-pyrroline-5-carboxylate dehydrogenase
    8.4e-25   85.2   0.0    1.2e-24   84.6   0.0    1.2  1  TIGR01236 D1pyr5carbox1: 1-pyrroline-5-carboxylate dehydrogenase
    2.8e-20   69.9   0.0    4.4e-20   69.3   0.0    1.3  1  TIGR02278 PaaN-DH: phenylacetic acid degradation protein paaN


Domain annotation for each model (and alignments):
>> TIGR01804  BADH: betaine aldehyde dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  181.7   0.0   1.1e-56   3.8e-54      36     452 ..      70     485 ..      30     497 .. 0.88

  Alignments for each domain:
  == domain 1    score: 181.7 bits;  conditional E-value: 1.1e-56
   TIGR01804  36 dvekaiaaarraqgewaalsalergrilrriaellrkkneelakletldtGkaleetlvadiddiadvleffaGladk....leGeiielgip.sfakvrreplGvvvgigawnyPlliaswksaPalaaGnalvlkPseitPltalkvaelleeaGlPkGvfnvvlGkgaevGeelvehkdvakvsltGgvetGkkimaaaae.elkkvtlelGGksPlivfddadlelavdqallanffsaGqvcsnGtrvlvekkikekflaklvervkkiklGdgfdeetelGPlisaehrdkvlkyiekgkeegaklaiGGkvpeeeeldeGffiePtvfadvtddmtivreeifGPvlsvlefeseeevikrandteyGlaagvftadleraervaerlkaGtvwindynls...paevPfGGykqsGiG 452
                   ++a a+ +++ g wa  s+ +r  ++++ +  l+k++e++ ++   +  k+  ++    +++   ++++  G  d+    l+G+    +i    a+v+r p+Gv+ ++g++nyP   +     Pal +Gn++v+k  ++  l+ +  +e++  + +P Gv+n + G g+++   +++  +v+  ++ Gg ++   +m++  e +  k +l l  k+  iv+ d +l++av + +++++   Gq c++   ++v+++i ++f +k  + v k+k+G ++++  +l Pl   ++   + + ie + + gak++ G ++      ++G+f++P+v+  v+++m++ +ee fGP+  +  f+s +++ +  ++t +G  a+vf++dl+++  + + l   ++ +n   ++   p   Pf G k s  G
  MMETSP1137-20121227|2745_1  70 ALDAATASWNHGRGAWALASPAHRVAKIQELVVELKKHREQIVNVLMWEICKTSADA----AKEFDRTMDYIQGTLDAhrelLGGDNAFKQIGgVLAQVKRRPVGVMLNMGPFNYPFNETYCTLIPALLMGNSVVMKLPNVGCLAHICTMEVYARV-FPAGVVNFISGAGRTTMPPIMQSGKVDIFAFIGGSKAADALMKTHPEpHRLKACLALDAKNLAIVMPDCNLDSAVAECVTGSLSYNGQRCTALKLMFVHESIAAQFTEKYCAAVDKMKMGLPWESGVKLTPLPEPSKPGYLRELIEDAEAKGAKVINGLGKQ-----ENGAFVRPSVLYPVSKEMRVWHEEQFGPLCPIAPFSSLDDIYAYLDETTFGQQASVFATDLTKTGALLDVLANNVCRVNLNMQCsrgPDFFPFSGRKSSAQG 485
                 3455556666777***********99999999999**********999999998777....45556678899998887555568887777666699*********************************************************987.9******************************************66542666889*****************************************************************************************************9996543.....48****************************************************************************976655222667899999999877 PP

>> TIGR02299  HpaE: 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  153.5   0.0   4.3e-48   1.5e-45      32     457 ..      59     485 ..      42     496 .. 0.88

  Alignments for each domain:
  == domain 1    score: 153.5 bits;  conditional E-value: 4.3e-48
   TIGR02299  32 vakGgaedvdkavkaakkafk....kwaelkaaerkklllkladliekhadeiavlesldtGqalrlvrkavaraaenfrffadkaeeakdgetlpvd..eflnytvrvpvGvvglitPwnaPfmlstwkiaPalaaGntvvlkpaelsPltaarlaelvkeaglPdGvlnlvhGfGeeaGkalvehpavkavsfvGetatGsaimrng.adtlkrlslelGGksPvivfddadleraldavvfmifslnGerctassrllvqesiaedfveklkervkairvGdPldeetevGPlikeehlakvlsylevaekeGatilvGgkkakevldkelsrGnyvaPtvlvdadnkmriaqeeifGPvltvipfkdeeealelandieyGlagyvwtedvgralrvaaaleaGmiyvn..senvrdlr.tPfGGvkasGig 457
                  a+  ++d  +a +aa ++++    +wa  ++a+r   ++ l   ++kh ++i  +   +  ++ +  +k+  r+ +  +   d  +e   g +  ++    l    r pvGv+  + P+n Pf  +   + Pal +Gn+vv+k  +   l+     e+      P Gv+n++ G G+++  ++++  +v + +f+G +++ +a+m+    ++  +  l l  k+ +iv+ d +l+ a+   v    s+nG+rcta   ++v+esia++f+ek  + v ++++G P + + ++ Pl +++    +++ +e ae +Ga+++ G          ++++G +v P+vl  ++++mr+ +ee fGP+  + pf++ +++    +++ +G  + v++ d+ ++  + + l   ++ vn   +  r     Pf G k+s +g
  MMETSP1137-20121227|2745_1  59 QARMAESDALAALDAATASWNhgrgAWALASPAHRVAKIQELVVELKKHREQIVNVLMWEICKTSADAAKEFDRTMDYIQGTLDAHRELLGGDNAFKQigGVLAQVKRRPVGVMLNMGPFNYPFNETYCTLIPALLMGNSVVMKLPNVGCLAHICTMEV-YARVFPAGVVNFISGAGRTTMPPIMQSGKVDIFAFIGGSKAADALMKTHpEPHRLKACLALDAKNLAIVMPDCNLDSAVAECVTGSLSYNGQRCTALKLMFVHESIAAQFTEKYCAAVDKMKMGLPWESGVKLTPLPEPSKPGYLRELIEDAEAKGAKVINGLG--------KQENGAFVRPSVLYPVSKEMRVWHEEQFGPLCPIAPFSSLDDIYAYLDETTFGQQASVFATDLTKTGALLDVLANNVCRVNlnMQCSRGPDfFPFSGRKSSAQG 485
                 55556666666666666665533348*******************************************************999999998877654443588999999*****************9999*******************99866555555.45568***************************************99875144555677899****************************************************************************************************932........3457*************************************************************999999998887766511666675432699999999876 PP

>> TIGR01780  SSADH: succinate-semialdehyde dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  149.9   0.0   6.3e-47   2.2e-44      16     433 ..      62     485 ..      50     494 .. 0.86

  Alignments for each domain:
  == domain 1    score: 149.9 bits;  conditional E-value: 6.3e-47
   TIGR01780  16 vsveeveeaieaaeealk....tykeltakerakllrkwyelilenkddlaklltlenGkplkeakgevlyaasyleWfaeeakrvyG.dviaslqsdkrllvikqPvGvaaiitPWnfPaamitrkagaalaaGctvvvkPaeqtPlsalalarlaekaGvPkgvlnvvtssaeevGkvltssPlvrkvsftGstavGkillkqsastvk.kvslelGGnaPlivfddadldqavegalaskfrnagqtcvcanrlyvhesvydefakklaekvkklkvGdGldegvtvGplinekavekvekhiedavekGakvvvgGdkreekggnffePtvlsdvtadmlvakeetfGPlapvfkfddeeevvalandtevGlaayffskdlakiirvaeelevGlvgvntglise...vvipfGGvkesGlG 433
                 ++ +++ +a++aa+ +++    ++   +  +r   +++++  + +++++++++l  e  k+ ++a  e   +  y++   +  + + G d +  +       v ++PvGv+  + P+n+P         +al  G +vv+k  +   l+ +   ++     +P+gv+n + + ++ +   + +s +v   +f G ++    l+k   +  + k  l l  +   iv++d +ld+av++ ++      gq c     ++vhes+  +f++k+  +v+k+k+G   ++gv   pl + +    + + ieda +kGakv+ g    ++++g f+ P vl  v+++m+v +ee fGPl+p+  f++ +++ a+ ++t +G  a +f+ dl+k   + + l   +  vn ++  +    + pf G k s  G
  MMETSP1137-20121227|2745_1  62 MAESDALAALDAATASWNhgrgAWALASPAHRVAKIQELVVELKKHREQIVNVLMWEICKTSADAAKEFDRTMDYIQGTLDAHRELLGgDNAFKQIGGVLAQVKRRPVGVMLNMGPFNYPFNETYCTLIPALLMGNSVVMKLPNVGCLAHICTMEVYA-RVFPAGVVNFISGAGRTTMPPIMQSGKVDIFAFIGGSKAADALMKTHPEPHRlKACLALDAKNLAIVMPDCNLDSAVAECVTGSLSYNGQRCTALKLMFVHESIAAQFTEKYCAAVDKMKMGLPWESGVKLTPLPEPSKPGYLRELIEDAEAKGAKVINGL--GKQENGAFVRPSVLYPVSKEMRVWHEEQFGPLCPIAPFSSLDDIYAYLDETTFGQQASVFATDLTKTGALLDVLANNVCRVNLNMQCSrgpDFFPFSGRKSSAQG 485
                 55555666666666655422226666666666666666655566799******************************98777666665155555555666667889*****************999**************987777776665555443.469*****************************************988775443889*****************************************************************************************************9986..4677899***************************************************************99999998888877765412257899999999877 PP

>> TIGR03216  OH_muco_semi_DH: 2-hydroxymuconic semialdehyde dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  148.0   0.0   2.1e-46   7.2e-44      28     441 ..      60     463 ..      50     497 .. 0.90

  Alignments for each domain:
  == domain 1    score: 148.0 bits;  conditional E-value: 2.1e-46
   TIGR03216  28 aevaeagkeevdaavkaaraalkgewgklsvaeraellkkvadeierrfdeflaaevadtGkpkslaskldiprgaanfrvfadvvknvateafematpdGkealnyavrkplGvvgvispwnlplllltwkvapalacGntvvvkpseetpatatllaevmeevGvpkGvynvvhGfGpdsaGefltrhpdvdaitftGetrtGeaimkaaadgvk.evslelGGknaaivfadadldaavegvlrsaflntGqvclgtervyverpifdrfvaalkekaeklklGvpedeaaelGpliskehrdkvlsyyklaveeGatvvtGGGvpelgdelaeGayvqptiwtglpdsarvvkeeifGpvchvapfdseeeviarandtayGlaasvwtedlsrahrvakklevGvvwvns 441
                 a++ae+++    +a +a+ +  +g w  +s a+r++ ++++  e+++  ++ ++  + +  k ++ a+k +  r++   +   d  ++        +   G  +l  + r+p+Gv+  + p+n p+      + pal +Gn+vv+k  +    +     ev   v  p+Gv n + G G  +      +  +vd  +f G +++ +a+mk+  +  + +  l l  kn aiv+ d++ld+av+ ++  +++  Gq c + + ++v+  i  +f ++  ++++k+k+G p ++ ++l pl   ++   +    + a  +Ga+v+ G G      ++++Ga+v+p+++  ++++ rv +ee fGp+c +apf s +++ a  ++t++G  asv+++dl+++  + + l   v+ vn 
  MMETSP1137-20121227|2745_1  60 ARMAESDALAALDAATASWNHGRGAWALASPAHRVAKIQELVVELKKHREQIVNVLMWEICKTSADAAK-EFDRTMDYIQGTLDAHRELLGGDNAFKQIGG--VLAQVKRRPVGVMLNMGPFNYPFNETYCTLIPALLMGNSVVMKLPNVGCLAHICTMEVYARV-FPAGVVNFISGAGRTTMPPI-MQSGKVDIFAFIGGSKAADALMKTHPEPHRlKACLALDAKNLAIVMPDCNLDSAVAECVTGSLSYNGQRCTALKLMFVHESIAAQFTEKYCAAVDKMKMGLPWESGVKLTPLPEPSKPGYLRELIEDAEAKGAKVINGLG------KQENGAFVRPSVLYPVSKEMRVWHEEQFGPLCPIAPFSSLDDIYAYLDETTFGQQASVFATDLTKTGALLDVLANNVCRVNL 463
                 56667777666677788888889**************************************99888776.7789999999999998887655444444555..999**********************999***************9999999998999998887.8************9988765.57789********************9988756889*****************************************************************************999999999999*************987......5789**************************************************************9999999999998885 PP

>> TIGR01722  MMSDH: methylmalonate-semialdehyde dehydrogenase (acylating)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  139.7   0.0   7.3e-44   2.5e-41      31     457 ..      61     488 ..      40     495 .. 0.88

  Alignments for each domain:
  == domain 1    score: 139.7 bits;  conditional E-value: 7.3e-44
   TIGR01722  31 kvaea.saeevdaavasaretfaawaetsvaerarvllryqallkehrdeiaklisaeqGktledakGdvarGlevvehacsvtslllG.etvesvakdvdvysirqplGvvaGitpfnfpamiplwmfplaiacGntfvlkpsekvpsaavklaellseaGapdGvlnvvhG.dkeavdrllehpdvkavsfvGsvavgeyiyetgsahgkrvqa..laGaknhmvvlpdadkeaaldalvgaavGaaGqrcmaisaavlvGaa.kelveeireraekvrvgagddpgaelGplitkqakervasliasgakeGaevlldGrgykveGyeeGnfvGitllervkpdmkiykeeifGpvlvvleadtleeaiklinespyGnGtaiftsdGaaarkf..qheievGqvGvnvpipvplpffsftGwkdslfGdlh 457
                 ++ae+ + + +daa as ++   awa +s a+r   +      lk+hr++i ++++ e  kt +da  +  r ++ ++ + +    llG +   +    v     r+p+Gv+  + pfn+p       +  a+  Gn+ v+k  +   +a +   e++     p Gv+n + G ++ ++  +++  +v   +f+G +++++ + +t      r++a     akn ++v+pd ++++a+ + v+ ++   Gqrc a+  + +  ++  ++ e+   +++k+++g   ++g +l pl ++++   + +li+++ ++Ga+v+ +G g      e+G fv +++l  v  +m++++ee fGp+  ++   +l++  + ++e+ +G+ +++f++d + +      +  +v +v +n+       ff f+G k+s  G l 
  MMETSP1137-20121227|2745_1  61 RMAESdALAALDAATASWNHGRGAWALASPAHRVAKIQELVVELKKHREQIVNVLMWEICKTSADAAKEFDRTMDYIQGTLDAHRELLGgDNAFKQIGGVLAQVKRRPVGVMLNMGPFNYPFNETYCTLIPALLMGNSVVMKLPNVGCLAHICTMEVYAR-VFPAGVVNFISGaGRTTMPPIMQSGKVDIFAFIGGSKAADALMKTHPE-PHRLKAclALDAKNLAIVMPDCNLDSAVAECVTGSLSYNGQRCTALKLMFVHESIaAQFTEKYCAAVDKMKMGLPWESGVKLTPLPEPSKPGYLRELIEDAEAKGAKVI-NGLGK----QENGAFVRPSVLYPVSKEMRVWHEEQFGPLCPIAPFSSLDDIYAYLDETTFGQQASVFATDLTKTGALldVLANNVCRVNLNMQCSRGPDFFPFSGRKSSAQGTLS 488
                 55555245789**********************9999999999***********************************999988766652665555566778889****************9999888888**************99*****99999876.58********994578899***************99999998887654.44454411568***********************************987666554499***************9999******************************86.77765....69********************************************************99976555441145567899999999999999**********999765 PP

>> TIGR03250  PhnAcAld_DH: putative phosphonoacetaldehyde dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  139.5   0.0   8.2e-44   2.8e-41      60     460 ..      93     494 ..      56     502 .. 0.88

  Alignments for each domain:
  == domain 1    score: 139.5 bits;  conditional E-value: 8.2e-44
   TIGR03250  60 rskileraaellaarkeeisdlitlesGlskkdslyevgrvadvlklaaaevlrddgqifscdltphgkkrkvftlrepllgvisaitpfnhplnqvahkvapaiatnnrvvlkpsekvplsallladllyeaGlpeemlqvvtGdpreiadelitdehvdlvtftGgvaiGkliaaka...gykravlelGGndplivledadldraadlavkGsyknsGqrctavkrilvqesvadrftellvektralkyGdpldrsvdlGtvideaaaklfeerveeavaeGarll..lgnkrdGalyaptvldrvdpelalvreetfGpvspvirfkdiddairisnstayglssgvctnrldaitkliael..evGtvnvwevpGyrleltpfGGikdsGlGykeGvqealk 460
                 r + +++ +  l++++e+i +++  e   + +d+  e +r +d ++     +l    +++  d++ ++    +  ++    gv+  + pfn+p+n+    ++pa+   n vv+k  +   l+ +  +++ y   +p  +++ + G  r     ++ + +vd+ +f Gg     ++ ++    +  +a l l   +  iv+ d +ld a    v+Gs    Gqrcta+k ++v+es+a++fte   +   ++k+G p +  v+l  + +      + e +e+a a+Ga+++  lg++ +Ga   p vl  v++e+++ +ee fGp+ p+  f+++dd  +  + t++g  ++v + +l +   l+  l  +v  vn+        +  pf G k s  G    + ealk
  MMETSP1137-20121227|2745_1  93 RVAKIQELVVELKKHREQIVNVLMWEICKTSADAAKEFDRTMDYIQ----GTLDAHRELLGGDNAFKQIGGVLAQVKRRPVGVMLNMGPFNYPFNETYCTLIPALLMGNSVVMKLPNVGCLAHICTMEV-YARVFPAGVVNFISGAGRTTMPPIMQSGKVDIFAFIGGSKAADALMKTHpepHRLKACLALDAKNLAIVMPDCNLDSAVAECVTGSLSYNGQRCTALKLMFVHESIAAQFTEKYCAAVDKMKMGLPWESGVKLTPLPEPSKPGYLRELIEDAEAKGAKVIngLGKQENGAFVRPSVLYPVSKEMRVWHEEQFGPLCPIAPFSSLDDIYAYLDETTFGQQASVFATDLTKTGALLDVLanNVCRVNLNMQCSRGPDFFPFSGRKSSAQGTL-SISEALK 494
                 444455555567889999*************************875....44555668899999988887777777777789********************************999999988887776.77889*******************************9998887776543221455789*****************************************************************************************************94446899********************************************************9999999988877644799999998888889999********99975.5777777 PP

>> TIGR03374  ABALDH: 1-pyrroline dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  138.2   0.0   2.3e-43   7.8e-41       3     436 ..      24     466 ..      22     493 .. 0.84

  Alignments for each domain:
  == domain 1    score: 138.2 bits;  conditional E-value: 2.3e-43
   TIGR03374   3 klliegklvagegekqavynpa....tgevileiaeasaeqvda..avraadaafae....wgqttpkaraelllkladaieenaevfaklesrncgkplhavlndeipaivdvfrffagaarc.lsglaageyleghtsmirrdpvgvvasiapwnyplmmaawklapalaagncvvlkpseitpltalklaelakdilpagvvnvlfgrgktvgdaltghekvrmvslt.gsiatgehilahtaasikrthmelggkapvivfddadidavvegvrtfgfynagqdctaacriyaqrgiydelveklgkavatlkigapedestelgplsslahlervsaaveeakalshikvitggekvkgkgyyfaptllagakqddaivqkevfgpvvsitvfddeeqvvrwandsryglassvwtkdvgrahrlsarlqygctwvnthfm 436
                 k+l +g + + eg  q vy p     t e+il   +a +++ da  a+ aa a++ +    w  ++p  r   +  l   +++  e++ ++   +  k   a    e    +d ++    a r  l g  a + + g  + ++r pvgv+  + p+nyp+  +   l pal  gn vv+k  ++  l+ +   e+ + ++pagvvn + g g+t   ++    kv + ++  gs a+ + + +h  +   ++ + l  k   iv+ d+++d+ v    t      gq cta   +++  +i  ++ ek  +av  +k+g p +   +l pl   ++   + +++e+a a +  kvi g  k+  +g + +p++l    ++  +  +e fgp+  i+ f   +++  + +++ +g  +sv++ d+ ++  l   l   +  vn  + 
  MMETSP1137-20121227|2745_1  24 KVLCNGIVSDWEGPVQEVYAPIfkegTQEKILIGYQARMAESDAlaALDAATASWNHgrgaWALASPAHRVAKIQELVVELKKHREQIVNVLMWEICKTS-ADAAKEFDRTMDYIQGTLDAHRElLGGDNAFKQIGGVLAQVKRRPVGVMLNMGPFNYPFNETYCTLIPALLMGNSVVMKLPNVGCLAHICTMEVYARVFPAGVVNFISGAGRTTMPPIMQSGKVDIFAFIgGSKAADALMKTHPEPHRLKACLALDAKNLAIVMPDCNLDSAVAECVTGSLSYNGQRCTALKLMFVHESIAAQFTEKYCAAVDKMKMGLPWESGVKLTPLPEPSKPGYLRELIEDAEAKG-AKVINGLGKQ-ENGAFVRPSVLYPVSKEMRVWHEEQFGPLCPIAPFSSLDDIYAYLDETTFGQQASVFATDLTKTGALLDVLANNVCRVNLNMQ 466
                 8999************999995333377888877777777666421445555544433333778889999888888888888777777666655555543.3445789999999999888888616788999**********************************************************************************************99865168888888889999999999******************976666666666666***************************************************************987.5899887665.578999*********************************************************99999999888888887644 PP

>> TIGR01237  D1pyr5carbox2: putative delta-1-pyrroline-5-carboxylate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  134.1   0.0     4e-42   1.4e-39      57     446 ..      53     441 ..      28     486 .. 0.92

  Alignments for each domain:
  == domain 1    score: 134.1 bits;  conditional E-value: 4e-42
   TIGR01237  57 sevvGkvakasvedaeqalqaakkafe....ewkktdveeraaillkaaailkrrrhelsallvlevGkiyaeadaevaeaidfleyyaremikla.kskevlsieGeknrylyiplGvavvispwnfplailvGmtvapivtGncvvlkpaeaatviaaklveileeaGlpkGvlqfvpGkGsevGeylvdhpktrlitftGsrevGlriyedaakvqpGqkhlkrviaelGGkdavivdesadieqavaaavtsafGfaGqkcsaasrvvvlekvydevverfveatkslkvgktdeadvqvgpvidqksfdkikeyielgkaegklvlggedddskGyfikptifkdvdrkarlaqeeifGpvvavlrakdfdealeiansteygltGgvis 446
                 +  +G  a+++  da  al+aa+++++    +w   ++ +r+a +      lk+ r ++  +l+ e+ k+ a+a  e   ++d+++   +   +l  +++  ++i G   +    p Gv + + p+n+p+     + + +++ Gn+vv+k  +   +     +e+  +   p+Gv++f+ G G+     +++  k+ + +f G    G +  +   k  p  + lk  +a l  k+  iv  + +++ ava  vt+++ ++Gq+c+a   + v+e++  ++ e++  a   +k+g + e+ v+++p+ +      ++e ie ++a+g  v+ g +++++G f++p+++  v ++ r+  ee fGp+  +   +  d+     ++t +g   +v++
  MMETSP1137-20121227|2745_1  53 KILIGYQARMAESDALAALDAATASWNhgrgAWALASPAHRVAKIQELVVELKKHREQIVNVLMWEICKTSADAAKEFDRTMDYIQGTLDAHRELLgGDNAFKQIGGVLAQVKRRPVGVMLNMGPFNYPFNETYCTLIPALLMGNSVVMKLPNVGCLAHICTMEVY-ARVFPAGVVNFISGAGRTTMPPIMQSGKVDIFAFIG----GSKAADALMKTHPEPHRLKACLA-LDAKNLAIVMPDCNLDSAVAECVTGSLSYNGQRCTALKLMFVHESIAAQFTEKYCAAVDKMKMGLPWESGVKLTPLPEPSKPGYLRELIEDAEAKGAKVINGLGKQENGAFVRPSVLYPVSKEMRVWHEEQFGPLCPIAPFSSLDDIYAYLDETTFGQQASVFA 441
                 4569999****************999744447999****************************************************9999998873666778899999*****************************************9888777666667765.5679******************************99....566777888999**999*98875.99************************************************************************************************************************************************999999999998887766 PP

>> TIGR03240  arg_catab_astD: succinylglutamic semialdehyde dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  120.3   0.0     6e-38   2.1e-35      28     444 ..      59     480 ..      34     491 .. 0.83

  Alignments for each domain:
  == domain 1    score: 120.3 bits;  conditional E-value: 6e-38
   TIGR03240  28 qgkaasaaqvekavkaarkafp....awarlsleeriavvkrfaelleeekeelaeviaketgkplweartevasmvakvaisikayeertGeke..seladakavlrhrphGvlavfGpynfpGhlpnGhivpallaGntvvfkpseltplvaeetvklwekaGlpaGvlnlvqGaretGk.alaaeedidGllftGssntGallhrqlagrpekila.lelGGnnplvveevkdidaavhlivqsafisaGqrctcarrllvkdgaeGdallerlvevaerltvgk.ydaepqpflGavisekaakellaaqekllalggksllelkqleeeaalltpgii.dvtevaevpdeeyfgpllkvlrykdfdealaeanntrfGlaaGllsddrelydkflleiraGi..vnwnkpltGassaapfGGiG 444
                 q++ a+++   +a+ aa ++++    awa +s ++r+a +++    l++++e++ +v+  e  k+  +a+ e    +  ++ ++ a++e  G  +  ++++   a ++ rp Gv+  +Gp+n+p       ++pall Gn+vv+k  ++  l+   t++++++   paGv+n++ Ga  t    ++++ ++d + f G s++   l ++  + p+++ a l l   n  +v    ++d+av++ v  ++   Gqrct  + ++v+++   + + e+  +  +++++g  ++      l ++        l +  e+++a+g+k +      +e+ a+++p+++  v++   v  ee fgpl  +  ++++d+  a  ++t fG  a + + d ++   +l      +  vn n + +      pf G  
  MMETSP1137-20121227|2745_1  59 QARMAESD-ALAALDAATASWNhgrgAWALASPAHRVAKIQELVVELKKHREQIVNVLMWEICKTSADAAKEFDRTMDYIQGTLDAHRELLGGDNafKQIGGVLAQVKRRPVGVMLNMGPFNYPFNETYCTLIPALLMGNSVVMKLPNVGCLAHICTMEVYARV-FPAGVVNFISGAGRTTMpPIMQSGKVDIFAFIGGSKAADALMKTHPE-PHRLKAcLALDAKNLAIVMPDCNLDSAVAECVTGSLSYNGQRCTALKLMFVHES-IAAQFTEKYCAAVDKMKMGLpWESGV--KLTPLPEPSKPGYLRELIEDAEAKGAKVING-LGKQENGAFVRPSVLyPVSKEMRVWHEEQFGPLCPIAPFSSLDDIYAYLDETTFGQQASVFATDLTKTGALLDVLANNVcrVNLNMQCSRGPDFFPFSGRK 480
                 44444433.334555555554322239**************************************************************998765236889999********************************************************9875.9**********86665516888899****************998765.5555443888999*99****************************8888887765.567899***********995366554..4667766666677777788888888876555.56677889*****9846999999***************************************999998888765554443377777777777777777755 PP

>> TIGR01238  D1pyr5carbox3: delta-1-pyrroline-5-carboxylate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.3   0.0   3.8e-30   1.3e-27      56     441 ..      47     442 ..      27     486 .. 0.84

  Alignments for each domain:
  == domain 1    score: 94.3 bits;  conditional E-value: 3.8e-30
   TIGR01238  56 knpadrkdivGqvseadaaevqeavdsavaafa....ewsatdakeraailerladlleshmpelvallvreaGktlsnaiaevreavdflryyakqvedvldeesaka.............lGavvcispwnfplaiftGqiaaalaaGntviakpaeqtsliaaravellqeaGvpagviqllpGrGedvGaaltsderiaGviftGstevarlinkalakredapvpliaetGGqnamivdstalaeqvvadvlasafdsaGqrcsalrvlcvqedvadrvltlikGamdelkvgkpirlttdvGpvidaeakqnllahiekmkakakkvaqvkleddvesekgtfvaptlf.el.ddldelkkevfGpvlhvvrykadeldkvvdkinakGygltlGvhsr 441
                 k+ +++k+++G+     ++++ +a+d+a a+       w    ++ r a+++ l + l++h  ++v +l+ e  kt  +a +e   ++d+++   +  ++ l+ ++a               +G+++ + p+n+p+      +  al  Gn+v+ k  +   l    ++e+     +pagv++++ G+G +    + +  ++   +f G ++ a  + k+  + +  ++ l  +   +n  iv      +  va+ ++ ++   Gqrc+al++++v e +a +  +    a+d++k+g p +    + p+ +      l + ie  +ak+ kv +   ++    e+g fv+p ++  + +++   ++e+fGp+  +  +    ld++   ++++ +g    v + 
  MMETSP1137-20121227|2745_1  47 KEGTQEKILIGYQARMAESDALAALDAATASWNhgrgAWALASPAHRVAKIQELVVELKKHREQIVNVLMWEICKTSADAAKEFDRTMDYIQGTLDAHRELLGGDNAFKqiggvlaqvkrrpVGVMLNMGPFNYPFNETYCTLIPALLMGNSVVMKLPNVGCLAHICTMEVYA-RVFPAGVVNFISGAGRTTMPPIMQSGKVDIFAFIGGSKAADALMKTHPEPHRLKACLALD--AKNLAIVMPDCNLDSAVAECVTGSLSYNGQRCTALKLMFVHESIAAQFTEKYCAAVDKMKMGLPWESGVKLTPLPEPSKPGYLRELIEDAEAKGAKVINGLGKQ----ENGAFVRPSVLyPVsKEMRVWHEEQFGPLCPIAPFS--SLDDIYAYLDETTFGQQASVFAT 442
                 455788999**998888888899999998876422227**9**************************************************9998888888877654445888899999988**********************************99999988887877765.579*****************************************9998776666444333..4566666666666777788889999*************************************************999999999********9998888766655....79******7762442679999***********9996..68899888888888887777654 PP

>> TIGR01236  D1pyr5carbox1: 1-pyrroline-5-carboxylate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.6   0.0   3.6e-27   1.2e-24      62     467 ..      58     454 ..      33     486 .. 0.84

  Alignments for each domain:
  == domain 1    score: 84.6 bits;  conditional E-value: 3.6e-27
   TIGR01236  62 kltnateedvkkaveaaldakke....Wselpfadraaiflkaadlls..gkyreeilaatmlgqsktvyqaeidavaelidffrfnvkyarelleqqP.svsapgelnkveyrpleGfvaaisPfnftaiaanlagaPa.lmGnvvvWkPsktavlsnyllmkileeaGlPpgvinfvpadgvkvsdvvladkdlaalhftGstavfkelwkkvasnldkyrnfPrivGetGGkdfvlvhpsadveevvaatirgafeyqGqkcsaasrlyvpkslwkelkeellaelkkvkvgdvddlssfmgavideksfakivkviekakkdpeeleilaGGkyddskGyfvePtvveskdPkeklmkeeifGPvltvyvydddkykeilevvdstskyaltGavfakdreaieeaekkl 467
                    +  e+d+ +a++aa +++++    W+    a+r a   k  +l+    k+re+i  + m +  kt  +a  +     +d+++  +   rell+     ++  g+l +v+ rp+ G +  + Pfn+    +  +  Pa lmGn vv k  ++  l+   +m++     +P+gv+nf+++ g +    ++ + ++    f G  +    l+k+   + ++ +    +      k++ +v p  +++++va  + g++ y+Gq+c+a   ++v +s+  +++e+  a  +k+k+g + +  + ++++ +  +   ++++ie+a ++    +++ G    + +G fv+P+v+     + ++ +ee fGP+  +   + +  ++i   +d+t+ ++   +vfa d        ++l
  MMETSP1137-20121227|2745_1  58 YQARMAESDALAALDAATASWNHgrgaWALASPAHRVA---KIQELVVelKKHREQIVNVLMWEICKTSADAAKE-FDRTMDYIQGTLDAHRELLGGDNaFKQIGGVLAQVKRRPV-GVMLNMGPFNYPFNETYCTLIPAlLMGNSVVMKLPNVGCLAHICTMEVYAR-VFPAGVVNFISGAGRTTMPPIMQSGKVDIFAFIGGSKAADALMKTHP-EPHRLKA--CL--ALDAKNLAIVMPDCNLDSAVAECVTGSLSYNGQRCTALKLMFVHESIAAQFTEKYCAAVDKMKMGLPWESGVKLTPLPEPSKPGYLRELIEDAEAKG--AKVING-LGKQENGAFVRPSVLYPVSKEMRVWHEEQFGPLCPIA--PFSSLDDIYAYLDETT-FGQQASVFATDLTKTGALLDVL 454
                 44555678888899999888764322276666666654...555555422699****************999666.5699*************9998875789999*********8.8999******9999999999999459*********************9865.69************99999999999999999*999999888877533.2233333..33..3568*****************************************************************************************9977..566665.445678***************************9876..5578999999999986.8999999999976665555555 PP

>> TIGR02278  PaaN-DH: phenylacetic acid degradation protein paaN
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.3   0.0   1.3e-22   4.4e-20     140     444 ..     164     462 ..      57     468 .. 0.78

  Alignments for each domain:
  == domain 1    score: 69.3 bits;  conditional E-value: 1.3e-22
   TIGR02278 140 iltpksGvavqinafnfPvwGlleklaPaflaGvPalvkPatatayvaealvklivesgllPeGalqlivGsvgdlldhld...srdvvaftGsaata.eklrahpnvleksirfsaeadslnaavlGedvtpdepefdlfvkeivreltakaGqkctairrvlvPkalveavlealkarlakvklGdPreedvklGplvsveqredveaavaallaagaevrlgdpeeldGaffaPtlllaeepeadavhateafGPvatllayddraeavrlaarGeGslvaslvtadpevarqfilglaafhGrlh 444
                 +     Gv +++  fn+P       l Pa+l G  +++k     + +a+ +  + v ++++P G +++i+G+ +  +  +    + d  af G  ++a + +++hp+  +  ++     d+ n a++ +d +     +d  v e v    +  Gq+cta++ ++v ++  ++ +e   a ++k+k+G P e +vkl pl +  +   +++ ++   a+ga+v  g  ++++Gaf+ P +l+    e   v + e fGP+  + ++++ ++             as++++d + +  ++  la+ + r++
  MMETSP1137-20121227|2745_1 164 VKRRPVGVMLNMGPFNYPFNETYCTLIPALLMGNSVVMKLP-NVGCLAHICT-MEVYARVFPAGVVNFISGAGRTTMPPIMqsgKVDIFAFIGGSKAAdALMKTHPEPHR--LKACLALDAKNLAIVMPDCN-----LDSAVAECVTGSLSYNGQRCTALKLMFVHESIAAQFTEKYCAAVDKMKMGLPWESGVKLTPLPEPSKPGYLRELIEDAEAKGAKVINGLGKQENGAFVRPSVLYPVSKEM-RVWHEEQFGPLCPIAPFSSLDDIYAYLDETTFGQQASVFATDLTKTGALLDVLANNVCRVN 462
                 44445699999999********************9999954.4566776654.567799*************99998766411145788898655555055688887655..566667788899**999987.....9999***************************************************************************************************9776665.566679***********99999877777666666788888887777777777777777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (530 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       139  (0.0338859); expected 82.0 (0.02)
Passed bias filter:                      122  (0.0297416); expected 82.0 (0.02)
Passed Vit filter:                        22  (0.00536324); expected 4.1 (0.001)
Passed Fwd filter:                        12  (0.0029254); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.64u 0.16s 00:00:00.80 Elapsed: 00:00:00.59
# Mc/sec: 1185.66
//
Query:       MMETSP1137-20121227|2746_1  [L=447]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      0.005   13.7   0.2      0.019   11.8   0.1    1.8  2  TIGR03056 bchO_mg_che_rel: putative magnesium chelatase accessory protein


Domain annotation for each model (and alignments):
>> TIGR03056  bchO_mg_che_rel: putative magnesium chelatase accessory protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.8   0.1   4.6e-06     0.019      25     110 ..     162     251 ..     148     274 .. 0.75
   2 ?   -1.3   0.0     0.047   1.9e+02     221     264 ..     363     407 ..     359     416 .. 0.78

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 4.6e-06
   TIGR03056  25 paaGPvllllhGagasshsfrklvplla.arfrvvapdlPGhGftratarfrfsl.kamaedlakllaaedlsPd....aviGhsaGaaial 110
                 p++ P+ll+lh +++++ s + lv + + + +r  +    Gh  t a+ +  f l   + ++  ++  a+   Pd    a++G saG+ +++
  MMETSP1137-20121227|2746_1 162 PSDAPLLLILHTLTGTAASAQWLVRAATqRGWRTCVLVRRGHARTLASPS--FNLlGDVDDAXEQVRHAKTAYPDaqltAMVGLSAGSGLLV 251
                 7899********************87661569*99988888887777777..554144455555555556666652222799*****99886 PP

  == domain 2    score: -1.3 bits;  conditional E-value: 0.047
   TIGR03056 221 vPvlliageedkavpp.dvskeaatrlplatlrevpGlGhlvhee 264
                 vP++++ + +d      ++  ++a+  p  +l + + + hl+ +e
  MMETSP1137-20121227|2746_1 363 VPLFILSSCDDMVCHKrQIRDDLAKVTPGVALLRTQEGSHLAFNE 407
                 799988888887765515778999999988888888779*99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (447 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        76  (0.0185275); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.15s 00:00:00.49 Elapsed: 00:00:00.40
# Mc/sec: 1474.98
//
Query:       MMETSP1137-20121227|2747_1  [L=138]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (138 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        30  (0.00731351); expected 82.0 (0.02)
Passed bias filter:                       30  (0.00731351); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.14s 00:00:00.29 Elapsed: 00:00:00.31
# Mc/sec: 587.56
//
Query:       MMETSP1137-20121227|2748_1  [L=362]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (362 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        66  (0.0160897); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.15s 00:00:00.42 Elapsed: 00:00:00.61
# Mc/sec: 783.28
//
Query:       MMETSP1137-20121227|2749_1  [L=318]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0041   14.5   0.0     0.0059   13.9   0.0    1.2  1  TIGR01840 esterase_phb: esterase, PHB depolymerase family


Domain annotation for each model (and alignments):
>> TIGR01840  esterase_phb: esterase, PHB depolymerase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.0   1.4e-06    0.0059      72     135 ..     122     186 ..      75     201 .. 0.77

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 1.4e-06
   TIGR01840  72 gtgeveslkqlidavkanysIDpnrvyvtGLSaGgget.aVllatypdvfAgaAsnaglpygsas 135
                  ++  + l  l + + +ny +Dp ++ v+G   Gg  + +++   yp v A+aA   + +  +a+
  MMETSP1137-20121227|2749_1 122 AARYHRLLARLFEVFIDNYPVDPTKISVSGYCFGGQAVlEIVRRGYPGVVAAAAFHPSTTNLTAT 186
                 44555566777777788***************9997653788999*******9988877766555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (318 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        60  (0.014627); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.23u 0.15s 00:00:00.38 Elapsed: 00:00:00.44
# Mc/sec: 953.92
//
Query:       MMETSP1137-20121227|2750_1  [L=116]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.9e-05   20.8   0.0    5.7e-05   20.6   0.0    1.0  1  TIGR03787 marine_sort_RR: proteobacterial dedicated sortase system response regulator
    0.00012   19.3   0.0    0.00013   19.2   0.0    1.0  1  TIGR02154 PhoB: phosphate regulon transcriptional regulatory protein PhoB
    0.00019   17.4   0.1    0.00021   17.3   0.0    1.0  1  TIGR02956 TMAO_torS: TMAO reductase sytem sensor TorS
    0.00049   17.6   0.0    0.00054   17.5   0.0    1.1  1  TIGR01387 cztR_silR_copR: heavy metal response regulator
     0.0051   13.9   0.0     0.0064   13.6   0.0    1.1  1  TIGR02875 spore_0_A: sporulation transcription factor Spo0A
  ------ inclusion threshold ------
      0.024   11.3   0.0      0.026   11.1   0.0    1.0  1  TIGR01818 ntrC: nitrogen regulation protein NR(I)


Domain annotation for each model (and alignments):
>> TIGR03787  marine_sort_RR: proteobacterial dedicated sortase system response regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   0.0   8.3e-08   5.7e-05      32     111 ..      26     110 ..      16     115 .. 0.80

  Alignments for each domain:
  == domain 1    score: 20.6 bits;  conditional E-value: 8.3e-08
   TIGR03787  32 drssaeeafkarlp..dlaiidvGlgeeid..GGfelcqelrs.lsktlpiifltardsdfdtv.sGlrlGaddyltkdislahll 111
                 + ++a ea++++l    la  d+ l++e    GG+ + ++lr    k++ +i lta + d++++ + ++ Gad +l k is++ ++
  MMETSP1137-20121227|2750_1  26 SEEEAYEAIESALTpfALAFCDMQLDDESTelGGLLVVKKLREnFGKQIKVISLTANE-DIEVLdASIKAGADSHLLKPISQHDIT 110
                 456788888888862358899****99975569*********72589*********75.677663679*************87664 PP

>> TIGR02154  PhoB: phosphate regulon transcriptional regulatory protein PhoB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   0.0   1.9e-07   0.00013      30     112 ..      22     109 ..      15     116 .] 0.75

  Alignments for each domain:
  == domain 1    score: 19.2 bits;  conditional E-value: 1.9e-07
   TIGR02154  30 veaedaeealalikeelP..dlilldWmlpgts....GielarrlrkeeetreiPiimltargeeedrvrgletGaddyvvkPfspkel 112
                 ve+++ eea  +i+ +l    l   d  l+++s    G+ ++++lr+ +  ++i +i lta  + e   +++++Gad ++ kP s +++
  MMETSP1137-20121227|2750_1  22 VECNSEEEAYEAIESALTpfALAFCDMQLDDEStelgGLLVVKKLRE-NFGKQIKVISLTANEDIEVLDASIKAGADSHLLKPISQHDI 109
                 5566666777666665431234555666665554444999*****96.5789*********9998888899**************9876 PP

>> TIGR02956  TMAO_torS: TMAO reductase sytem sensor TorS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.0   3.1e-07   0.00021     732     815 ..      25     112 ..      18     116 .] 0.86

  Alignments for each domain:
  == domain 1    score: 17.3 bits;  conditional E-value: 3.1e-07
   TIGR02956 732 esgksAleclee..kaFDlallDinLpDtd....GvtLlkqLkeleeakeelkfiavsAhvfnedvekylaagFdgflaKPlsekqLvat 815
                 +s ++A e++e     F la+ D++L D +    G+   k+L+e +++  ++k+i+++A+   e ++  ++ag d+ l KP+s+++++++
  MMETSP1137-20121227|2750_1  25 NSEEEAYEAIESalTPFALAFCDMQLDDEStelgGLLVVKKLRENFGK--QIKVISLTANEDIEVLDASIKAGADSHLLKPISQHDITKI 112
                 5667888999887789***********976555599999999999988..59*******************************9998876 PP

>> TIGR01387  cztR_silR_copR: heavy metal response regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.0   7.9e-07   0.00054      54     104 ..      56     107 ..      27     113 .. 0.85

  Alignments for each domain:
  == domain 1    score: 17.5 bits;  conditional E-value: 7.9e-07
   TIGR01387  54 gldGwevlkalres.aketpvllltardevadkvkGlelGaddylvkpfefa 104
                  l G  v+k+lre+ +k+  v+ lta+++++     ++ Gad +l+kp++  
  MMETSP1137-20121227|2750_1  56 ELGGLLVVKKLRENfGKQIKVISLTANEDIEVLDASIKAGADSHLLKPISQH 107
                 567999******98579999***********9999*************9765 PP

>> TIGR02875  spore_0_A: sporulation transcription factor Spo0A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   0.0   9.4e-06    0.0064      60     113 ..      56     108 ..      46     115 .. 0.87

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 9.4e-06
   TIGR02875  60 yldGlgvleklaeielkakpkvlllsavGqekitkravelGadyyvlkpfdlei 113
                  l Gl v++kl+e   k + kv+ l+a    ++   +++ Gad ++lkp+  + 
  MMETSP1137-20121227|2750_1  56 ELGGLLVVKKLRENFGK-QIKVISLTANEDIEVLDASIKAGADSHLLKPISQHD 108
                 6889*******998777.99*****************************97654 PP

>> TIGR01818  ntrC: nitrogen regulation protein NR(I)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   3.9e-05     0.026      33     106 ..      29     109 ..      13     115 .. 0.72

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 3.9e-05
   TIGR01818  33 svlralare.qp.dllitdvrmPged....gldllkkikkrr.PklpvivmsahsdldaavkayqrGafeylpkPfdldea 106
                 ++++a+++  +p  l + d+++ +e+    gl ++kk++++   +++vi ++a++d++   ++++ Ga  +l kP   +++
  MMETSP1137-20121227|2750_1  29 EAYEAIESAlTPfALAFCDMQLDDEStelgGLLVVKKLRENFgKQIKVISLTANEDIEVLDASIKAGADSHLLKPISQHDI 109
                 4444444443332455677777765433338999999998762579*****************************877665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (116 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       118  (0.0287665); expected 82.0 (0.02)
Passed bias filter:                      105  (0.0255973); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.18u 0.12s 00:00:00.30 Elapsed: 00:00:00.30
# Mc/sec: 510.36
//
Query:       MMETSP1137-20121227|2751_1  [L=234]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (234 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        76  (0.0185275); expected 82.0 (0.02)
Passed bias filter:                       34  (0.00828864); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.15s 00:00:00.36 Elapsed: 00:00:00.33
# Mc/sec: 935.92
//
Query:       MMETSP1137-20121227|2752_1  [L=183]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (183 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        71  (0.0173086); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.16s 00:00:00.35 Elapsed: 00:00:00.39
# Mc/sec: 619.33
//
Query:       MMETSP1137-20121227|2753_1  [L=182]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (182 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        69  (0.0168211); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.13s 00:00:00.31 Elapsed: 00:00:00.31
# Mc/sec: 774.90
//
Query:       MMETSP1137-20121227|2755_1  [L=905]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   4.5e-108  360.2   0.0    2.9e-90  301.3   0.0    2.0  2  TIGR00958 3a01208: antigen peptide transporter 2
    1.5e-97  325.5   0.1    1.2e-89  299.3   0.0    2.1  2  TIGR02204 MsbA_rel: ABC transporter, permease/ATP-binding protein
      5e-89  297.1   0.0    2.3e-86  288.3   0.0    2.1  2  TIGR02203 MsbA_lipidA: lipid A export permease/ATP-binding protein MsbA
      1e-73  246.6   0.0    3.2e-72  241.7   0.0    2.0  2  TIGR01846 type_I_sec_HlyB: type I secretion system ATPase
    5.1e-70  234.6   0.0    7.6e-70  234.0   0.0    1.2  1  TIGR03797 NHLM_micro_ABC2: NHLM bacteriocin system ABC transporter, ATP-binding protein
      7e-67  224.0   0.2    1.9e-62  209.3   0.0    2.1  2  TIGR03796 NHLM_micro_ABC1: NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein
    6.1e-65  217.6   0.1    3.1e-61  205.4   0.0    2.1  2  TIGR03375 type_I_sec_LssB: type I secretion system ATPase
    1.2e-59  200.3   0.0    1.8e-59  199.7   0.0    1.2  1  TIGR01192 chvA: glucan exporter ATP-binding protein
    7.3e-57  191.3   0.1    7.7e-56  187.9   0.0    2.0  2  TIGR02857 CydD: thiol reductant ABC exporter, CydD subunit
    7.6e-56  187.6   0.1    1.5e-55  186.6   0.1    1.4  1  TIGR01842 type_I_sec_PrtD: type I secretion system ATPase
    4.3e-54  182.0   0.0    9.7e-54  180.8   0.0    1.5  2  TIGR01193 bacteriocin_ABC: ABC-type bacteriocin transporter
    3.7e-47  159.0   0.0    6.5e-47  158.2   0.0    1.4  1  TIGR02868 CydC: thiol reductant ABC exporter, CydC subunit
    1.9e-38  130.1   0.0    2.9e-38  129.5   0.0    1.2  1  TIGR00972 3a0107s01c2: phosphate ABC transporter, ATP-binding protein
    1.5e-34  116.5   0.0      1e-33  113.8   0.0    1.9  2  TIGR00957 MRP_assoc_pro: multi drug resistance-associated protein (MRP)
    2.5e-34  116.8   0.0    3.8e-34  116.2   0.0    1.2  1  TIGR01186 proV: glycine betaine/L-proline transport ATP binding subunit
    2.3e-31  106.9   0.0    3.4e-31  106.3   0.0    1.2  1  TIGR02314 ABC_MetN: D-methionine ABC transporter, ATP-binding protein
    4.7e-31  105.9   0.0    7.6e-31  105.2   0.0    1.3  1  TIGR03864 PQQ_ABC_ATP: ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system
      7e-31  105.3   0.0    1.1e-30  104.7   0.0    1.2  1  TIGR02315 ABC_phnC: phosphonate ABC transporter, ATP-binding protein
    1.2e-30  104.7   0.0    1.9e-30  104.1   0.0    1.2  1  TIGR03265 PhnT2: putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein
    2.8e-30  103.3   0.0    4.2e-30  102.7   0.0    1.2  1  TIGR01187 potA: polyamine ABC transporter, ATP-binding protein
      3e-30  103.3   0.0    5.2e-30  102.5   0.0    1.4  1  TIGR01277 thiQ: thiamine ABC transporter, ATP-binding protein
    4.2e-30  102.8   0.0    6.4e-30  102.2   0.0    1.3  1  TIGR00968 3a0106s01: sulfate ABC transporter, ATP-binding protein
    4.4e-30  102.9   0.0      7e-30  102.3   0.0    1.2  1  TIGR02142 modC_ABC: molybdate ABC transporter, ATP-binding protein
      6e-29   99.0   0.0    8.8e-29   98.5   0.0    1.3  1  TIGR02982 heterocyst_DevA: ABC exporter ATP-binding subunit, DevA family
    2.5e-28   96.8   0.0    4.3e-28   96.0   0.0    1.3  1  TIGR03608 L_ocin_972_ABC: putative bacteriocin export ABC transporter, lactococcin 972 group
    5.5e-28   95.9   0.0    8.8e-28   95.3   0.0    1.3  1  TIGR02673 FtsE: cell division ATP-binding protein FtsE
    7.8e-28   95.2   0.0    1.3e-27   94.5   0.0    1.2  1  TIGR03873 F420-0_ABC_ATP: proposed F420-0 ABC transporter, ATP-binding protein
    8.9e-28   95.3   0.0    1.5e-27   94.6   0.0    1.3  1  TIGR00960 3a0501s02: type II secretory pathway family protein
    2.2e-27   94.0   0.0    3.6e-27   93.2   0.0    1.3  1  TIGR01188 drrA: daunorubicin resistance ABC transporter, ATP-binding protein
    6.1e-26   89.1   0.0    9.7e-26   88.5   0.0    1.3  1  TIGR02211 LolD_lipo_ex: lipoprotein releasing system, ATP-binding protein
    1.5e-25   87.6   0.5    4.2e-25   86.2   0.0    1.9  2  TIGR01166 cbiO: cobalt ABC transporter, ATP-binding protein
    2.2e-25   87.3   0.0    3.8e-25   86.5   0.0    1.3  1  TIGR03410 urea_trans_UrtE: urea ABC transporter, ATP-binding protein UrtE
    1.9e-24   84.0   0.0    7.4e-24   82.1   0.0    1.8  1  TIGR03005 ectoine_ehuA: ectoine/hydroxyectoine ABC transporter, ATP-binding protein EhuA
    2.1e-24   84.3   0.0    3.7e-24   83.5   0.0    1.3  1  TIGR02769 nickel_nikE: nickel import ATP-binding protein NikE
    6.2e-24   82.5   0.0    9.9e-24   81.8   0.0    1.2  1  TIGR03258 PhnT: 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT
    1.1e-23   81.9   0.0    1.8e-23   81.2   0.0    1.3  1  TIGR01184 ntrCD: nitrate ABC transporter, ATP-binding proteins C and D
      4e-22   76.5   0.0    8.2e-22   75.5   0.0    1.5  1  TIGR02770 nickel_nikD: nickel import ATP-binding protein NikD
    5.6e-21   72.9   0.0    1.1e-20   72.0   0.0    1.3  1  TIGR01978 sufC: FeS assembly ATPase SufC
      7e-20   69.1   0.0    1.2e-19   68.3   0.0    1.3  1  TIGR03415 ABC_choXWV_ATP: choline ABC transporter, ATP-binding protein
    1.6e-19   67.7   0.0    2.5e-19   67.1   0.0    1.2  1  TIGR00955 3a01204: pigment precursor permease
      3e-19   67.4   0.0      5e-19   66.7   0.0    1.3  1  TIGR03411 urea_trans_UrtD: urea ABC transporter, ATP-binding protein UrtD
    5.6e-19   66.3   0.1      3e-11   41.0   0.1    2.2  2  TIGR02324 CP_lyasePhnL: phosphonate C-P lyase system protein PhnL
    1.4e-18   64.5   0.0      2e-18   63.9   0.0    1.1  1  TIGR02633 xylG: D-xylose ABC transporter, ATP-binding protein
    4.1e-18   63.7   0.1    6.8e-18   63.0   0.1    1.3  1  TIGR03771 anch_rpt_ABC: anchored repeat-type ABC transporter, ATP-binding subunit
    4.5e-18   62.0   0.0    3.7e-15   52.3   0.0    1.9  2  TIGR01271 CFTR_protein: cystic fibrosis transmembrane conductor regulator (CFTR)
    2.6e-17   61.1   0.0    5.2e-17   60.1   0.0    1.4  1  TIGR03740 galliderm_ABC: lantibiotic protection ABC transporter, ATP-binding subunit
    1.8e-16   58.3   0.0    3.3e-16   57.4   0.0    1.4  1  TIGR03522 GldA_ABC_ATP: gliding motility-associated ABC transporter ATP-binding subunit GldA
      3e-16   57.5   0.1    1.2e-15   55.5   0.0    2.0  1  TIGR01189 ccmA: heme ABC exporter, ATP-binding protein CcmA
    1.1e-14   52.0   0.0    1.8e-14   51.3   0.0    1.3  1  TIGR01288 nodI: nodulation ABC transporter NodI
    2.7e-14   50.5   0.0    1.4e-09   34.9   0.0    2.1  2  TIGR03719 ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family
      1e-13   48.6   0.1    3.9e-13   46.6   0.1    1.7  1  TIGR03269 met_CoM_red_A2: methyl coenzyme M reductase system, component A2
    1.2e-12   44.9   0.0    2.4e-12   43.9   0.0    1.3  1  TIGR00954 3a01203: peroxysomal long chain fatty acyl transporter
    1.6e-11   41.3   0.0    2.6e-11   40.6   0.0    1.2  1  TIGR01194 cyc_pep_trnsptr: cyclic peptide transporter
    6.5e-10   35.1   0.0    9.2e-10   34.6   0.0    1.1  1  TIGR00956 3a01205: pleiotropic drug resistance family protein
    5.4e-09   33.7   0.1    1.3e-08   32.4   0.1    1.6  1  TIGR02323 CP_lyasePhnK: phosphonate C-P lyase system protein PhnK
    9.9e-09   30.4   0.0    1.4e-08   29.9   0.0    1.1  1  TIGR01257 rim_protein: rim ABC transporter
    4.8e-08   29.5   0.1    0.00013   18.1   0.1    2.1  2  TIGR00630 uvra: excinuclease ABC subunit A


Domain annotation for each model (and alignments):
>> TIGR00958  3a01208: antigen peptide transporter 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.8   0.0   3.7e-18   2.7e-16     139     415 ..      39     327 ..       9     331 .. 0.78
   2 !  301.3   0.0     4e-92   2.9e-90     466     710 ..     487     738 ..     466     739 .. 0.92

  Alignments for each domain:
  == domain 1    score: 56.8 bits;  conditional E-value: 3.7e-18
   TIGR00958 139 eeeqsetad....lllrLLkllk.rdlkllllalvllvlsvlgevliPkytgrvidtllqdks...vealakaifll...tllslaSsllaglrgGsfeyamarinlriredlfksllrQdigFfdenktGeltSRlssDtstvsesls.lnvnvllrnlvkllgllifmlslSprLtlvtllalPlvllaekvfgkvyqklseevqeavakanqvaeEalsglrTVrSFaaEekEasrfkekleeilqlnkkkalayalylwttellgllilvlv.LayGgqlvlegkv 415
                 ++ + ++++     +  LL+++  rd+ l+++++++ + + +g  l+ ++ g  +d+l+   +    + l   + ++   ++l  a  +++ ++  +  +a+++ ++r +   +ks++rQdig+fd n+  el    ++   +v + l  +    l  nl + ++++++ l   +r  l+++ ++P+vl+   + ++  +  ++++ ea aka+ va Eal+++rTV S a E++ a ++ + l   +q +  k++++ l l +  l+++ ++++v  ++G  lv e+++
  MMETSP1137-20121227|2755_1  39 KQTKLDKDNxpivSIGTLLQFATpRDKTLMIIGFCFEMGAGVGFPLMFYFFGDAVDALGDPANttgEKLLDVMLEVMgkvGILAGAVLVAKIISTICIGVAKEHQSARYKVGYLKSIVRQDIGWFDCNNPQELSTAYGEALLLVEKGLGgESWGQLGLNLGQTITGFAISLLSEWRVGLLSFGFVPIVLFGVYMNSQAQRVATKKIGEAYAKAGGVAAEALGAVRTVASLAIEDEIAAKYDKGLIAAMQATIDKSFKEGLSLGIV-LSATPLQLAVcFMLGLFLVREDRL 327
                 222222222446688899999872577778899999999999999999*********98654433234444455566211566667777888899999*************************************************97255678889********************************99998888888999*****************************************99999999999887666554.444444444414567777776665 PP

  == domain 2    score: 301.3 bits;  conditional E-value: 4e-92
   TIGR00958 466 lsgtlapknleGkveFqdVsFsYPsrpdkpvlkdLtftlepGevvalVGPsGsGKStvaallenlYqPtgGqvllDgkplkeydhkylhrkvalVgqEPvlfsgsvreNiaYGlt.ktedeevtaaakaanahdFisel.ekgydtevgekGsqlsgGqkqriAiARALvrkPrvLiLDeAtSALDa....eveqllqesksaksrtvlliahrLstvekadkilvlkkgsvvelGthkqLmeked.vykql 710
                 ++g  +p+ ++G++e ++V F+YPs p+ ++ ++ ++++ +G   al GPsGsGKSt++ l+e++Y+P++G++ lDg++lk+++ ++l+ ++ lVgqEPvlfsg+v eNiaYG+  ++++e+v  aak+  ah+Fi+++  +gydt+vg+ G  lsgGqkqr+AiARA+++kP +L+LDeAtSALD     +v+++l + +++k+rt + iahrL t++++d i+v+++g +ve+G++++L + e+ ++++l
  MMETSP1137-20121227|2755_1 487 NPGGEKPDGVKGHIEVKEVVFAYPSAPHFNICNGYNLNIPAGAMCALCGPSGSGKSTIVGLMERFYDPQAGSLHLDGHNLKDLNVRWLRAQMSLVGQEPVLFSGTVYENIAYGVLgNATREQVEEAAKTGDAHNFITKVlADGYDTDVGQGGGKLSGGQKQRVAIARAMIKKPEILLLDEATSALDNaaekAVQTALDKIRETKKRTTITIAHRLTTIRNSDIIAVVNRGVIVEQGNWEELCAMEGgLFRKL 738
                 6899*************************************************************************************************************761566******************962677********************************************45545555555699****************************************99888677766 PP

>> TIGR02204  MsbA_rel: ABC transporter, permease/ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.3   0.0   3.4e-08   2.4e-06     142     237 ..     197     292 ..      88     325 .. 0.79
   2 !  299.3   0.0   1.7e-91   1.2e-89     281     575 ..     443     742 ..     433     743 .. 0.96

  Alignments for each domain:
  == domain 1    score: 24.3 bits;  conditional E-value: 3.4e-08
   TIGR02204 142 nlllliGalamlvitsvkltslvllavPlvllPillfgrrvrklsresqdrladasayagealeaiktvqayaseeaersrfdaavekayeaarkr 237
                 nl  +i ++a+ ++ + ++ +l    vP+vl+ + + ++  r ++++  +  a+a++ a+eal a++tv + a e++ ++++d+ + +a++a+  +
  MMETSP1137-20121227|2755_1 197 NLGQTITGFAISLLSEWRVGLLSFGFVPIVLFGVYMNSQAQRVATKKIGEAYAKAGGVAAEALGAVRTVASLAIEDEIAAKYDKGLIAAMQATIDK 292
                 455667788888899999*******************************************************************99999987655 PP

  == domain 2    score: 299.3 bits;  conditional E-value: 1.7e-91
   TIGR02204 281 vlyavlvagslgalsevlgelqraaGaaerliellkaksdikaPaqpkalpakvrgeiefeevkfayParpdqkaldgldltvrpGetvalvGPsGaGkstllelllrfydPqsGailldGvdlreldpeelrerlalvpqdsalfaasvleniryGrp.dasdeeveaaakaaeadefisk.lpeGydtllGergvtLsGGqkqriaiarailkdapiLLLdeatsaLdaeseqlvqqaleel..mkgrttlviahrLatvlkadrivvldkGriveqGthaeLia.kggLyarlarLq 575
                 vl + ++a+s+g l + +  l++a  a   +   l   + i++ +   + p  v+g+ie++ev fayP+ p+ +  +g +l++ +G   al GPsG+Gkst++ l+ rfydPq G++ ldG +l++l+ + lr++++lv q+++lf++ v eni+yG + +a++e+ve+aak+  a++fi+k l +Gydt +G+ g +LsGGqkqr+aiara++k+  iLLLdeatsaLd  +e++vq+al+++   k+rtt+ iahrL+t++++d i+v+++G iveqG+ +eL a +ggL+++la+ q
  MMETSP1137-20121227|2755_1 443 VLCSNFAATSMGILPQNITVLKKAQQALVPVQKTLMRIPPIDSFNPGGEKPDGVKGHIEVKEVVFAYPSAPHFNICNGYNLNIPAGAMCALCGPSGSGKSTIVGLMERFYDPQAGSLHLDGHNLKDLNVRWLRAQMSLVGQEPVLFSGTVYENIAYGVLgNATREQVEEAAKTGDAHNFITKvLADGYDTDVGQGGGKLSGGQKQRVAIARAMIKKPEILLLDEATSALDNAAEKAVQTALDKIreTKKRTTITIAHRLTTIRNSDIIAVVNRGVIVEQGNWEELCAmEGGLFRKLAEKQ 742
                 6788899************************************99999*************************************************************************************************************9758*******************87589*********************************************************98334789***********************************974799******876 PP

>> TIGR02203  MsbA_lipidA: lipid A export permease/ATP-binding protein MsbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.7   0.0    0.0064      0.46     144     227 ..     203     285 ..     197     331 .. 0.75
   2 !  288.3   0.0   3.2e-88   2.3e-86     294     566 ..     462     739 ..     439     745 .. 0.92

  Alignments for each domain:
  == domain 1    score: 6.7 bits;  conditional E-value: 0.0064
   TIGR02203 144 igllivllylsWqltlivvvllPvlallvrvvskrlrkiskeiqnsigeltkvveealqgyrvvklfggqeaeakRfdavsnrl 227
                 +g +++ l  +W++ l+    +P++ + v + s+  r  +k+i ++ +++  v++eal   r v + + ++  a ++d+     
  MMETSP1137-20121227|2755_1 203 TG-FAISLLSEWRVGLLSFGFVPIVLFGVYMNSQAQRVATKKIGEAYAKAGGVAAEALGAVRTVASLAIEDEIAAKYDKGLIAA 285
                 44.45556689****************99999999999*********************************9999999744333 PP

  == domain 2    score: 288.3 bits;  conditional E-value: 3.2e-88
   TIGR02203 294 vsaklqkglaaaesvfallDsppekdeGtralervrGkvefrnvtfrypgd.drealdsislkveaGevvalvGrsGsGkstlvnllpRFyepdsGeillDgvdladlkLasLRrqvalvsqdvvLFddtiaenvaYgeleevdeaeveealaaaylkdlvdk.lpeGldtevGengskLsGGqRqRlaiaRallkdaPiLiLDeatsaLDneseRlvqaaLerlm..kgRttlviahRLstiekaDrivvlddGkiverGtheeLlarnG.lYasLh 566
                 v +k q+ l+  ++ +  +   +  + G  +++ v+G++e+++v f yp++ + ++ ++ +l++ aG + al G+sGsGkst+v l+ RFy+p++G++ lDg++l+dl+++ LR+q++lv+q+ vLF +t+ en+aYg l ++++++veea+++  +++++ k l +G dt+vG+ g+kLsGGq+qR+aiaRa++k   iL+LDeatsaLDn +e++vq aL+++   k+Rtt+ iahRL+ti+++D i v++ G ive+G  eeL a +G l+ +L 
  MMETSP1137-20121227|2755_1 462 VLKKAQQALVPVQKTLMRIPPIDSFNPGGEKPDGVKGHIEVKEVVFAYPSApHFNICNGYNLNIPAGAMCALCGPSGSGKSTIVGLMERFYDPQAGSLHLDGHNLKDLNVRWLRAQMSLVGQEPVLFSGTVYENIAYGVLGNATREQVEEAAKTGDAHNFITKvLADGYDTDVGQGGGKLSGGQKQRVAIARAMIKKPEILLLDEATSALDNAAEKAVQTALDKIRetKKRTTITIAHRLTTIRNSDIIAVVNRGVIVEQGNWEELCAMEGgLFRKLA 739
                 557789999999999999999999999**********************9835688999******************************************************************************************************87479*********************************************************9963368************************************998752666665 PP

>> TIGR01846  type_I_sec_HlyB: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.0     0.081       5.8     304     358 ..     242     293 ..     215     327 .. 0.73
   2 !  241.7   0.0   4.5e-74   3.2e-72     451     693 ..     495     743 ..     464     744 .. 0.93

  Alignments for each domain:
  == domain 1    score: 2.8 bits;  conditional E-value: 0.081
   TIGR01846 304 krvedkfeksaeaqsflvesvtgietikasavepqfkrrWerqlaayvaasfkvt 358
                 k++ +     a+a  +  e++ +++t+ + a+e+++  ++++ l a ++a+ + +
  MMETSP1137-20121227|2755_1 242 KKIGE---AYAKAGGVAAEALGAVRTVASLAIEDEIAAKYDKGLIAAMQATIDKS 293
                 33333...3456777889************************9988888776554 PP

  == domain 2    score: 241.7 bits;  conditional E-value: 4.5e-74
   TIGR01846 451 elkGaiefenirfryked.spevlsnlsldikaGeviGivGpsGsGkstltkllqrlyvPekGrvlvdgvdlaladPawlrrqvgvvlqenvlfsrsirdnialak.PaiseekviaaaklaGahdfise.lkqGyetevgekGaalsGGqrqrialaralvanPrilildeatsaldyeseavimrnlrei..ckgrtviiiahrlstvraadrilvlekGkivesGkheellak.eglyaklyqqqs 693
                  +kG+ie++++ f y      ++ +  +l+i+aG +  + GpsGsGkst+  l+ r+y P+ G + +dg++l  ++  wlr q+++v qe vlfs+++ +nia +   ++  e+v +aak   ah+fi++ l +Gy+t+vg+ G++lsGGq+qr+a+ara++++P il+ldeatsald  +e++++  l++i  +k rt i+iahrl+t+r++d i v+++G ive+G++eel a  +gl+ kl ++q 
  MMETSP1137-20121227|2755_1 495 GVKGHIEVKEVVFAYPSApHFNICNGYNLNIPAGAMCALCGPSGSGKSTIVGLMERFYDPQAGSLHLDGHNLKDLNVRWLRAQMSLVGQEPVLFSGTVYENIAYGVlGNATREQVEEAAKTGDAHNFITKvLADGYDTDVGQGGGKLSGGQKQRVAIARAMIKKPEILLLDEATSALDNAAEKAVQTALDKIreTKKRTTITIAHRLTTIRNSDIIAVVNRGVIVEQGNWEELCAMeGGLFRKLAEKQQ 743
                 579************75415689999*****************************************************************************986368999****************874799**********************************************************66789************************************9975889*99999885 PP

>> TIGR03797  NHLM_micro_ABC2: NHLM bacteriocin system ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  234.0   0.0   1.1e-71   7.6e-70     401     685 ..     453     742 ..     441     743 .. 0.89

  Alignments for each domain:
  == domain 1    score: 234.0 bits;  conditional E-value: 1.1e-71
   TIGR03797 401 fgsflkavtslaetlievlavvplyerakPileaepEvdeekvdpgkLsGaievdrvtFrYekd.gplvLddvslkiepGefvaivGaSGsGKStllrlLLgFekPesGsvlyDGqdlekldvqavRrqlGvVLQngrllsgsileniaggas..ltldeaweaarmagleeDika.mPmglhTvisegggtlSGGQrQRlliAralvrkPrillfDEATSALDNrtQaiVsesleklkvtR....iviAHRLSTirnadrilvleeGrvveqGsyeeLla.keGlfaelarRQ 685
                 +g++ + +t l ++  +++ v  +  r+ Pi + +p       +p+ ++G+iev++v F+Y +     + +  +l+i +G   a+ G+SGsGKSt++ l+  F  P++Gs++ DG++l++l+v+ +R q+  V Q+  l+sg+++enia g+    t +++ eaa++    + i++ +  g  T + +ggg+lSGGQ+QR+ iAra+++kP+ill+DEATSALDN + ++V  +l+k++ t+    i iAHRL Tirn+d i v++ G +veqG++eeL a ++Glf +la++Q
  MMETSP1137-20121227|2755_1 453 MGILPQNITVLKKAQQALVPVQKTLMRIPPIDSFNP----GGEKPDGVKGHIEVKEVVFAYPSApHFNICNGYNLNIPAGAMCALCGPSGSGKSTIVGLMERFYDPQAGSLHLDGHNLKDLNVRWLRAQMSLVGQEPVLFSGTVYENIAYGVLgnATREQVEEAAKTGDAHNFITKvLADGYDTDVGQGGGKLSGGQKQRVAIARAMIKKPEILLLDEATSALDNAAEKAVQTALDKIRETKkrttITIAHRLTTIRNSDIIAVVNRGVIVEQGNWEELCAmEGGLFRKLAEKQ 742
                 555566666666666666677777777777766655....45689****************655145799*******************************************************************************9997779****************99882577999******************************************************9765333449********************************995678*******99 PP

>> TIGR03796  NHLM_micro_ABC1: NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.7   0.1   7.8e-05    0.0056     217     365 ..     135     286 ..     100     329 .. 0.69
   2 !  209.3   0.0   2.6e-64   1.9e-62     472     708 ..     494     738 ..     467     740 .. 0.90

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 7.8e-05
   TIGR03796 217 llrrleiklavassarflwhilrlPveffaqRaageiasRvqlndkva.ellsgq.lattvldlvlvvfyalvmllydlvlaliaialaainvlalqlvsrkrvdanrrlqqdagklagvaiaglqsietlkAsglesdffsrwa.Gyqakl 365
                  +   + + + +    +l+ i+r  + +f+     e+++    +  +  + l+g+   +  l+l   ++ +++ ll ++ ++l+ + +  i ++ + ++s+++  a++++ + ++k+ gva ++l ++ t+   + e+++ +++  G+ a +
  MMETSP1137-20121227|2755_1 135 CIGVAKEHQSARYKVGYLKSIVRQDIGWFDCNNPQELSTAYGEALLLVeKGLGGEsWGQLGLNLGQTITGFAISLLSEWRVGLLSFGFVPIVLFGVYMNSQAQRVATKKIGEAYAKAGGVAAEALGAVRTVASLAIEDEIAAKYDkGLIAAM 286
                 444555556666666667777777777777777777777666655443044544414455677778888888999999****************************************************************9952554443 PP

  == domain 2    score: 209.3 bits;  conditional E-value: 2.6e-64
   TIGR03796 472 ekLsGkvelrnvtfgysal.eapliedfslslkpGqrvAlvGgsGsGkstiaklvaGlyepwsGeilfDgkpreeiprevlanslalvdqdivlfegtvrdnltl.wdetipeedlvrAakDAaihdvila.rpggyeaelaegganlsGGqrqRleiARaLvknPsiLilDEatsaLDaetEkaidenlrr....RgctciivaHRLstiRdcdeiivlerGkvverGtHeella.kegaYarL 708
                   ++G++e+++v f+y    + ++ ++++l++  G+  Al G+sGsGksti  l+  +y+p +G++ +Dg+++++++ + l++ ++lv q+ vlf+gtv +n++       ++e++++Aak    h+ i++ +++gy++++ +gg  lsGGq+qR+ iARa++k+P iL+lDEatsaLD ++Eka++ +l +    +  t+i +aHRL tiR++d i v++rG +ve+G+ eel+a ++g +++L
  MMETSP1137-20121227|2755_1 494 DGVKGHIEVKEVVFAYPSApHFNICNGYNLNIPAGAMCALCGPSGSGKSTIVGLMERFYDPQAGSLHLDGHNLKDLNVRWLRAQMSLVGQEPVLFSGTVYENIAYgVLGNATREQVEEAAKTGDAHNFITKvLADGYDTDVGQGGGKLSGGQKQRVAIARAMIKKPEILLLDEATSALDNAAEKAVQTALDKiretKKRTTITIAHRLTTIRNSDIIAVVNRGVIVEQGNWEELCAmEGGLFRKL 738
                 5689************7651568999*****************************************************************************962234567899**************973589***************************************************98775432235679***********************************9455667766 PP

>> TIGR03375  type_I_sec_LssB: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.2   0.0   0.00047     0.034     296     401 ..     221     327 ..     204     329 .. 0.86
   2 !  205.4   0.0   4.3e-63   3.1e-61     409     688 ..     442     727 ..     430     732 .. 0.90

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 0.00047
   TIGR03375 296 avplvllvglllqkplsklaeeslresaqkna.llveslegletikalnaesrlqkkWeqvvaalakvslklrllsalltnlaalvqqlvsvavvvvGvyliaegel 401
                  ++ ++l+g+++  + +++a++++ e+ +k + +  e+l ++ t+  l+ e ++ +k+++ + a  ++ ++  + + l+  +   ++ l   +  ++G +l+ e++l
  MMETSP1137-20121227|2755_1 221 GFVPIVLFGVYMNSQAQRVATKKIGEAYAKAGgVAAEALGAVRTVASLAIEDEIAAKYDKGLIAAMQATIDKSFKEGLSLGIVLSATPLQLAVCFMLGLFLVREDRL 327
                 5566899********************999853889************************9999999999999999999999999999988999999****999887 PP

  == domain 2    score: 205.4 bits;  conditional E-value: 4.3e-63
   TIGR03375 409 aviLsgRalaPlaqlaglltryqqaktaleslde.lmklpvereeekrllsreklkGeielknvsfkYpeeekaaL.knvslkikpGekvaiiGriGsGKstllklllglyepteGsvlldgvdirqidpadlrrnigyvpqdvtLfyGtlrdNialgap.aaedeellraaelaGvtefvkk.hpkGldlqigerGesLSgGQrqavalaRallkdppillLDEPtsalDnsseekllerLkella..dkTlvlvtHrtslLelvdriivldkGrivadGpkdev 688
                 av+ s  a ++++ l + +t +++a++al  +++ lm+ p   + +    + + +kG+ie+k+v f+Yp + + ++ +  +l+i +G   a+ G  GsGKst+  l+ ++y+p++Gs+ ldg++++ +++  lr+++++v q+++Lf+Gt+ +Nia+g   +a+ e++ +aa++  +++f+ k  ++G+d+ +g++G +LSgGQ+q va+aRa++k+p+illLDE tsalDn++e+ + ++L ++ +  ++T + ++Hr + ++  d i v+++G iv +G+ +e+
  MMETSP1137-20121227|2755_1 442 AVLCSNFAATSMGILPQNITVLKKAQQALVPVQKtLMRIPPIDSFNPGGEKPDGVKGHIEVKEVVFAYPSAPHFNIcNGYNLNIPAGAMCALCGPSGSGKSTIVGLMERFYDPQAGSLHLDGHNLKDLNVRWLRAQMSLVGQEPVLFSGTVYENIAYGVLgNATREQVEEAAKTGDAHNFITKvLADGYDTDVGQGGGKLSGGQKQRVAIARAMIKKPEILLLDEATSALDNAAEKAVQTALDKIREtkKRTTITIAHRLTTIRNSDIIAVVNRGVIVEQGNWEEL 727
                 455566666777777777777777777777776437887777677777778899*****************998873668******************************************************************************986899999*************976379*********************************************************99876699******************************98775 PP

>> TIGR01192  chvA: glucan exporter ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  199.7   0.0   2.5e-61   1.8e-59     329     568 ..     494     740 ..     432     754 .. 0.90

  Alignments for each domain:
  == domain 1    score: 199.7 bits;  conditional E-value: 2.5e-61
   TIGR01192 329 knvkgavefrdisfefanssq..gvrdvsfeakagqtvaivgptgagkttlinllqrvydpksgqilidgvdiatvtreslrksiatvfqdagllnrsirenirlgr.edatdeevveaakaaaasdfiekrl.kgydtlvgergnrlsggerqrlaiarailknapilvldeatsaldvetearvkdaidalr..knrttfiiahrlstvreadlvlfldqgrliekgsfdeliqkd.grfakllr 568
                 ++vkg++e +++ f ++ +          +++ ag   a+ gp+g+gk+t++ l++r ydp++g + +dg +++ ++ + lr  ++ v q+  l+  ++ eni  g   +at e+v eaak+  a++fi k l +gydt vg+ g +lsgg++qr+aiara++k   il+ldeatsald  +e  v+ a+d +r  k+rtt+ iahrl+t+r++d++  +++g ++e+g+++el   + g f kl  
  MMETSP1137-20121227|2755_1 494 DGVKGHIEVKEVVFAYPSAPHfnICNGYNLNIPAGAMCALCGPSGSGKSTIVGLMERFYDPQAGSLHLDGHNLKDLNVRWLRAQMSLVGQEPVLFSGTVYENIAYGVlGNATREQVEEAAKTGDAHNFITKVLaDGYDTDVGQGGGKLSGGQKQRVAIARAMIKKPEILLLDEATSALDNAAEKAVQTALDKIRetKKRTTITIAHRLTTIRNSDIIAVVNRGVIVEQGNWEELCAMEgGLFRKLAE 740
                 68**************98764113445678999*************************************************************************73579999***************9976379*********************************************************85578************************************9876156777755 PP

>> TIGR02857  CydD: thiol reductant ABC exporter, CydD subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.0      0.49        35       9      64 ..     110     164 ..     105     179 .. 0.74
   2 !  187.9   0.0   1.1e-57   7.7e-56     315     527 ..     490     711 ..     456     713 .. 0.88

  Alignments for each domain:
  == domain 1    score: 0.9 bits;  conditional E-value: 0.49
   TIGR02857   9 allgvvsallliaqAallarvvssliaagealaelltalaalalvlllRallawlk 64 
                 ++l+v++ + ++a A+l+a+++s++ + g a ++ ++   +  l  ++R+ ++w+ 
  MMETSP1137-20121227|2755_1 110 VMLEVMGKVGILAGAVLVAKIISTICI-GVAKEHQSARYKVGYLKSIVRQDIGWFD 164
                 68899999****************954.5555555555666666677788887776 PP

  == domain 2    score: 187.9 bits;  conditional E-value: 1.1e-57
   TIGR02857 315 taaass...slelenvsvayegrk..palkevsltvepgelvalvGaSGaGKstllklllgfvepteGailvngaelaeldadswrkqiawvpQkPllfegtvaenirlar.kdaseaevkealeragldelv.kalpqgleteiGergagLSgGqrqRlaLArallrdapllllDEPtahLDaeteaevlealrela..egrtvllvaHrlalaeladkiv 527
                  ++++    ++e+++v +ay+ +   ++ ++ +l++++g + al+G+SG+GKst++ l+ +f +p+ G+++++g++l++l+ + +r q++ v+Q+P+lf+gtv eni+ +   +a++++v+ea++  ++++++ k l +g++t +G++g +LSgGq+qR+a+Ara++++ ++lllDE t++LD+++e++v+ al+++   ++rt++ +aHrl ++++ d i 
  MMETSP1137-20121227|2755_1 490 GEKPDGvkgHIEVKEVVFAYPSAPhfNICNGYNLNIPAGAMCALCGPSGSGKSTIVGLMERFYDPQAGSLHLDGHNLKDLNVRWLRAQMSLVGQEPVLFSGTVYENIAYGVlGNATREQVEEAAKTGDAHNFItKVLADGYDTDVGQGGGKLSGGQKQRVAIARAMIKKPEILLLDEATSALDNAAEKAVQTALDKIRetKKRTTITIAHRLTTIRNSDIIA 711
                 3333335569**********98877999*******************************************************9************************8752689999*************98256899*********************************************************9866789*************999775 PP

>> TIGR01842  type_I_sec_PrtD: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  186.6   0.1     2e-57   1.5e-55     313     540 ..     496     727 ..     463     730 .. 0.94

  Alignments for each domain:
  == domain 1    score: 186.6 bits;  conditional E-value: 2e-57
   TIGR01842 313 pegelevenvslvppeekk.ktlkgisfalkaGealaiiGpsgsGkssLarllvGvwlpasGsvrlDgadlkqwdretlGksiGYlPqdveLfeGtvaeniaR.feenadaekvieaaklagvhelilr.lpkGYdteigegGaaLsgGqrqRiaLaRalygdPklvvLDePnanLDeeGeqalakalkelka.rkitvvvithrpsllelvdkilvlkdGalkafGereev 540
                 ++g++ev++v+++ p++ + ++ +g ++++ aG++ a+ GpsgsGks+++ l+   + p++Gs++lDg +lk  + + l  ++  + q+  Lf+Gtv enia  +  na+ e+v eaak  ++h++i + l +GYdt++g+gG +LsgGq+qR+a+aRa+  +P +++LDe  + LD++ e+a+ +al ++++ +k+t+++i+hr + ++  d i+v++ G + + G+ ee+
  MMETSP1137-20121227|2755_1 496 VKGHIEVKEVVFAYPSAPHfNICNGYNLNIPAGAMCALCGPSGSGKSTIVGLMERFYDPQAGSLHLDGHNLKDLNVRWLRAQMSLVGQEPVLFSGTVYENIAYgVLGNATREQVEEAAKTGDAHNFITKvLADGYDTDVGQGGGKLSGGQKQRVAIARAMIKKPEILLLDEATSALDNAAEKAVQTALDKIREtKKRTTITIAHRLTTIRNSDIIAVVNRGVIVEQGNWEEL 727
                 689********9999877648899******************************************************************************645667*******************98579***********************************************************963789***************************99998876 PP

>> TIGR01193  bacteriocin_ABC: ABC-type bacteriocin transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0       4.3   3.1e+02     325     372 ..     243     290 ..     206     325 .. 0.65
   2 !  180.8   0.0   1.4e-55   9.7e-54     468     706 ..     494     739 ..     453     741 .. 0.89

  Alignments for each domain:
  == domain 1    score: -2.6 bits;  conditional E-value: 4.3
   TIGR01193 325 dameanavlnssiiedlnGietiksltseeerykkidsefadyleksl 372
                 +  ea a       e l  + t+ sl+ e+e   k d+ +   ++ ++
  MMETSP1137-20121227|2755_1 243 KIGEAYAKAGGVAAEALGAVRTVASLAIEDEIAAKYDKGLIAAMQATI 290
                 444555555556678899999999999999999888877665555544 PP

  == domain 2    score: 180.8 bits;  conditional E-value: 1.4e-55
   TIGR01193 468 enlngdievndvsysyGyg..sevledislkikknekitlvGlsGsGkstlakllvkffqaesGeillngkslkdidkhelrqlinylPqePfifsGsilenlllgakenvsqeeikkaveiaeikddiek.lplGyqtelseeassisgGqkqrlalarallsdskvlildestsnldlltekki...venllklkdktiifvahrlsvakksdkiivldeGkiieqGshkellken.Gfyasli 706
                   ++g+iev++v + y  +   ++ +  +l+i +    +l G sGsGkst++ l+ +f++++ G ++l+g++lkd++   lr  ++ + qeP++fsG++ en+  g   n+++e++++a +  + ++ i k l  Gy+t++ + + ++sgGqkqr+a+ara++ + ++l+lde+ts ld   ek +   ++++ + k++t i +ahrl+  ++sd i v+++G i+eqG+++el + + G +++l 
  MMETSP1137-20121227|2755_1 494 DGVKGHIEVKEVVFAYPSAphFNICNGYNLNIPAGAMCALCGPSGSGKSTIVGLMERFYDPQAGSLHLDGHNLKDLNVRWLRAQMSLVGQEPVLFSGTVYENIAYGVLGNATREQVEEAAKTGDAHNFITKvLADGYDTDVGQGGGKLSGGQKQRVAIARAMIKKPEILLLDEATSALDNAAEKAVqtaLDKIRETKKRTTITIAHRLTTIRNSDIIAVVNRGVIVEQGNWEELCAMEgGLFRKLA 739
                 557899**********87622589*********************************************************************************************************884689************************************************9883335566666789***********************************976516888775 PP

>> TIGR02868  CydC: thiol reductant ABC exporter, CydC subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  158.2   0.0   9.1e-49   6.5e-47     270     530 .]     438     701 ..     421     701 .. 0.90

  Alignments for each domain:
  == domain 1    score: 158.2 bits;  conditional E-value: 9.1e-49
   TIGR02868 270 pvalAvlvLlpLaafealaalpaAaqqltrvraaaeRieevldakvevaeasapaaeaaasekptlelrdlsvsypgaee..vlkgvsldlepGervavvGasGaGKstLlallaglldplkGevtldgvsvaslsesevrrvvsvlaqdaHlFdttvreNlrlar.pdatdeellaaLervgLadwlra.LpdGldtklgeggarlSGGerqRlalARaLladapvllLDEPtehLDaeteeelledLl..aaeegrtvvlvthrl 530
                  ++  + vL++  a   +  lp+ +  l+++++a+  ++++l   ++ +  +   +++ ++ k ++e++++ ++yp a++  + +g +l++++G+  a+ G+sG+GKst++ l+ ++ dp++G++ ldg ++++l+   +r+ +s++ q++ lF+ tv eN+  +  ++at e++++a +    ++ + + L dG+dt++g+gg  lSGG++qR+a+ARa++++ ++llLDE t  LD ++e+++ ++L     +++rt++ ++hrl
  MMETSP1137-20121227|2755_1 438 NIL--IAVLCSNFAATSMGILPQNITVLKKAQQALVPVQKTLMRIPPIDSFNPGGEKPDGV-KGHIEVKEVVFAYPSAPHfnICNGYNLNIPAGAMCALCGPSGSGKSTIVGLMERFYDPQAGSLHLDGHNLKDLNVRWLRAQMSLVGQEPVLFSGTVYENIAYGVlGNATREQVEEAAKTGDAHNFITKvLADGYDTDVGQGGGKLSGGQKQRVAIARAMIKKPEILLLDEATSALDNAAEKAVQTALDkiRETKKRTTITIAHRL 701
                 334..44566555556789999999999999999999999998887777777667766666.889**************9999*********************************************************************************96489*******************998********************************************************998556677888******86 PP

>> TIGR00972  3a0107s01c2: phosphate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  129.5   0.0     4e-40   2.9e-38      14     230 ..     515     727 ..     499     732 .. 0.85

  Alignments for each domain:
  == domain 1    score: 129.5 bits;  conditional E-value: 4e-40
   TIGR00972  14 kealkdvnleikknkvtaliGpsGcGkstllrslnrlndlveevrieGkvllegkdiydkkldvvelrkkvGmvfqkpnpfpmsiydnvayglrlkgikdkkeldeive....esLkkaalwdevkdklkksalsLsGGqqqrlciaralavePevlLlDePtsaLDpiatekieeliqeLkkk..ytivivthnmqqaarvsdktaffleGelveegeteqi 230
                 ++  +  nl+i++ ++ al GpsG+Gkst++  + r+ d       +G+++l+g+++ d   +v  lr+++ +v q+p  f+ ++y+n+ayg+  +   ++++++e+++    ++     l d   +++ + + +LsGGq+qr++iara+  +Pe+lLlDe tsaLD  a + ++  +++++++   t + + h +  ++r sd +a++ +G +ve+g+ e++
  MMETSP1137-20121227|2755_1 515 FNICNGYNLNIPAGAMCALCGPSGSGKSTIVGLMERFYDPQ-----AGSLHLDGHNLKDL--NVRWLRAQMSLVGQEPVLFSGTVYENIAYGVLGNA--TREQVEEAAKtgdaHNFITKVLADGYDTDVGQGGGKLSGGQKQRVAIARAMIKKPEILLLDEATSALDNAAEKAVQTALDKIRETkkRTTITIAHRLT-TIRNSDIIAVVNRGVIVEQGNWEEL 727
                 5567889********************************98.....9*********9875..999***************************87664..666666666511114566677899999999999**************************************999999988887543377788899996.7899****************98886 PP

>> TIGR00957  MRP_assoc_pro: multi drug resistance-associated protein (MRP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.0      0.27        19    1002    1073 ..     106     180 ..      91     188 .. 0.72
   2 !  113.8   0.0   1.4e-35     1e-33    1282    1517 ..     497     739 ..     461     743 .. 0.90

  Alignments for each domain:
  == domain 1    score: 0.2 bits;  conditional E-value: 0.27
   TIGR00957 1002 entklrlsvyaalgilqgiavlgysma.vsiggi..lasrvlhldllhnvlrspmsffertpsgnlvnrfskeld 1073
                  +  ++ l v + +gil g+++++  ++ ++ig      s + ++  l++++r    +f+     +l   +   l 
  MMETSP1137-20121227|2755_1  106 KLLDVMLEVMGKVGILAGAVLVAKIIStICIGVAkeHQSARYKVGYLKSIVRQDIGWFDCNNPQELSTAYGEALL 180 
                  4457899***********987766554144444321567788999*************98877777766666655 PP

  == domain 2    score: 113.8 bits;  conditional E-value: 1.4e-35
   TIGR00957 1282 sgrvefrnyslryredldl.vlrdlnvtieggekvgivgrtgagkssltlglfrinesaegeiiidglniakiglhdlrfkltiipqdpvlfsgslrmnld..pfsqysdeevwlalelahlkdfvs.alpdkldfecaeggenlsvgqrqlvclarallrktkilvldeataavdletdnliqstirtqfe..dctvltiahrlntimdytrvlvldkgevaefdapsellqqr.gifysma 1517
                  +g++e ++  + y     + + +  n++i  g    + g +g+gks++   + r  +   g + +dg n+ ++ +  lr +++++ q+pvlfsg++  n+    +++ + e+v  a +    ++f++  l d+ d +  +gg +ls gq+q v +ara+++k  il+ldeat+a+d  +++ +q+++    e  + t +tiahrl ti +   + v+++g++ e +   el +   g+f  +a
  MMETSP1137-20121227|2755_1  497 KGHIEVKEVVFAYPSAPHFnICNGYNLNIPAGAMCALCGPSGSGKSTIVGLMERFYDPQAGSLHLDGHNLKDLNVRWLRAQMSLVGQEPVLFSGTVYENIAygVLGNATREQVEEAAKTGDAHNFITkVLADGYDTDVGQGGGKLSGGQKQRVAIARAMIKKPEILLLDEATSALDNAAEKAVQTALDKIREtkKRTTITIAHRLTTIRNSDIIAVVNRGVIVEQGNWEELCAMEgGLFRKLA 739 
                  6888888888888877777245679***********************99999*******************************************99875227999******************9735899****************************************************998654441167999********************************986526777766 PP

>> TIGR01186  proV: glycine betaine/L-proline transport ATP binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  116.2   0.0   5.3e-36   3.8e-34      10     218 ..     519     728 ..     515     781 .. 0.88

  Alignments for each domain:
  == domain 1    score: 116.2 bits;  conditional E-value: 5.3e-36
   TIGR01186  10 ndvdleieeGeiiviiGlsGsGkstlvrllnrliePtaGkilidGediaeisdaelrevrrkkiamviqkialfPhmtildnislgl....ellkideqerkekalealklvdleeyedry...PdelsGGmqqrvGlaralaaePdlllmdeafsaldPlirdelqdelvklqkklqktivfithdldealrlgdrivilkaGeivqvGtPdeil 218
                 n  +l+i  G +  + G+sGsGkst+v l++r+ +P aG +++dG+++ +++   l    r ++++v q+  lf   t+ +ni++g+       +++e  +   a + + +v  ++y         +lsGG++qrv +ara+  +P++ll+dea sald    + +q  l k++++ ++t + i+h l  ++r +d i++++ G iv  G  +e+ 
  MMETSP1137-20121227|2755_1 519 NGYNLNIPAGAMCALCGPSGSGKSTIVGLMERFYDPQAGSLHLDGHNLKDLNVRWL----RAQMSLVGQEPVLFS-GTVYENIAYGVlgnaTREQVEEAAKTGDAHNFITKVLADGYDTDVgqgGGKLSGGQKQRVAIARAMIKKPEILLLDEATSALDNAAEKAVQTALDKIRETKKRTTITIAHRLT-TIRNSDIIAVVNRGVIVEQGNWEELC 728
                 56799*********************************************999999....99********99997.69*******972211234455556666788889999889998765111569*************************************************************6.79****************99998865 PP

>> TIGR02314  ABC_MetN: D-methionine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  106.3   0.0   4.7e-33   3.4e-31      17     229 ..     514     728 ..     499     745 .. 0.82

  Alignments for each domain:
  == domain 1    score: 106.3 bits;  conditional E-value: 4.7e-33
   TIGR02314  17 kikaldnvslfvpkgqifgvigasgagkstlircvnllekptsgavivdgkdlttlsnaelvkarrqigmifqhfnllssrtvfgnvalplelentpkekikrkvt..ellalv..glsdkkds....ypsnlsggqkqrvaiaralasepkvllcdeatsaldpattqsilellkeinrrlgltillithemdvvkricdevavidkgeliekgtvseif 229
                 +++  +  +l +p+g ++ + g sg+gkst++  ++ +  p  g++ +dg++l  l+       r q+ ++ q   +l s tv++n+a  + l n ++e++++  +  +   ++   l+d  d+        lsggqkqrvaiara+  +p +ll deatsald a+ +++ + l +i  + + t + i+h +  +++  d +av+++g ++e+g   e+ 
  MMETSP1137-20121227|2755_1 514 HFNICNGYNLNIPAGAMCALCGPSGSGKSTIVGLMERFYDPQAGSLHLDGHNLKDLNVR---WLRAQMSLVGQEP-VLFSGTVYENIAYGV-LGNATREQVEEAAKtgDAHNFItkVLADGYDTdvgqGGGKLSGGQKQRVAIARAMIKKPEILLLDEATSALDNAAEKAVQTALDKIRETKKRTTITIAHRLTTIRN-SDIIAVVNRGVIVEQGNWEELC 728
                 566678889******************************************99888654...5578889998986.56688*******987.7788888887643311332222112455444411114578*************************************************************99865.8***************988876 PP

>> TIGR03864  PQQ_ABC_ATP: ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  105.2   0.0   1.1e-32   7.6e-31       2     224 ..     500     732 ..     499     741 .. 0.83

  Alignments for each domain:
  == domain 1    score: 105.2 bits;  conditional E-value: 1.1e-32
   TIGR03864   2 leveglsfaygkr...ralddvsltvakgefvaLLGpnGaGkstLfslltrLyeakegeikvaGldlrrapkeala.rlGvvfqqstlDldlsveqnlryhaaLhGlsraeaeeriee....alarlglaeraeekvr....eLnGGhrrrveiarallhePklLLlDeatvGLDiesraalveevrelvreeglsvLWathlvdeveaedrlvvlhkGkvlaqGaaaelaaead 224
                 +ev+++ fay +    ++ ++ +l+++ g+++aL Gp G+Gkst++ l+ r y+ ++g++++ G++l++ +++ l+ ++ +v q++ l    +v +n+ y   L   +r+++ee  ++    +     la+  ++ v     +L+GG+++rv iara++ +P++LLlDeat  LD ++ +a+++++ ++ ++++ + +   h +  ++++d + v+++G ++ qG  +el+a ++
  MMETSP1137-20121227|2755_1 500 IEVKEVVFAYPSAphfNICNGYNLNIPAGAMCALCGPSGSGKSTIVGLMERFYDPQAGSLHLDGHNLKDLNVRWLRaQMSLVGQEPVLF-SGTVYENIAYG-VLGNATREQVEEAAKTgdahNFITKVLADGYDTDVGqgggKLSGGQKQRVAIARAMIKKPEILLLDEATSALDNAAEKAVQTALDKIRETKKRTTITIAHRLTTIRNSDIIAVVNRGVIVEQGNWEELCAMEG 732
                 67888888887652224567889**********************************************9999995389****999995.679******94.45555555544444321111333445777777777522237**********************************************99999999999******************************98765 PP

>> TIGR02315  ABC_phnC: phosphonate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  104.7   0.0   1.5e-32   1.1e-30       2     232 ..     500     726 ..     499     731 .. 0.83

  Alignments for each domain:
  == domain 1    score: 104.7 bits;  conditional E-value: 1.5e-32
   TIGR02315   2 levenlskvypngk..qalknvnleikkGelvaviGlsGaGkstllrsinrlveissgsillegkevtklkkkelrklrkkigmifqeynlierltvlenvLsgrlgakstlksllglfseedkekAlelLerv...glaelaakradqLsGGqqqRvaiaRalaqqpklilaDEPiasLDpksskqvmdllkrinkekgitvivnlHqvdlakkyadrivglkageivfdgasse 232
                 +ev+++   yp++   ++ +  nl+i  G + a+ G+sG+Gkst++  ++r+ +++ gs+ l+g+++++l   ++r lr++++++ qe  l    tv en+  g lg  +  + + +  ++     A + +++v   g +    +   +LsGGq+qRvaiaRa++++p+++l DE +++LD+++ k v  +l +i + k+ t+i   H++   ++ +d i  ++ g iv +g+ +e
  MMETSP1137-20121227|2755_1 500 IEVKEVVFAYPSAPhfNICNGYNLNIPAGAMCALCGPSGSGKSTIVGLMERFYDPQAGSLHLDGHNLKDL---NVRWLRAQMSLVGQEPVLF-SGTVYENIAYGVLGNATREQ-VEEAAKTG---DAHNFITKVladGYDTDVGQGGGKLSGGQKQRVAIARAMIKKPEILLLDEATSALDNAAEKAVQTALDKIRETKKRTTITIAHRLTTIRN-SDIIAVVNRGVIVEQGNWEE 726
                 7899999999976512567899******************************************999855...68999**********8776.579***********877655.44444444...455555555111666667788899************************************************************998765.67676778888887776655 PP

>> TIGR03265  PhnT2: putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  104.1   0.0   2.6e-32   1.9e-30      16     222 ..     514     727 ..     497     735 .. 0.83

  Alignments for each domain:
  == domain 1    score: 104.1 bits;  conditional E-value: 2.6e-32
   TIGR03265  16 aftalkdislsvkkgelvclLGPsGCGkttLLriiaGLekqdaGaillggrditrlppq..krdyGivfqsYaLfPnltvaeniayGLknkk.lkreevaerveelLelv......glsgseekyPgqlsGGqqqrvaLaralalsPglLLLDePlsaLDakvrekLreelkklqrklgvttimvthdqeealslaDrivvmnkgkieqvgtPeei 222
                 +f++ +  +l++ +g + +l GPsG Gk+t++ ++  + +++aG+++l+g+++ +l ++  + +  +v q  +Lf   tv eniayG+ ++  +++ e a++   + + +      g ++   +  g+lsGGq+qrva+ara++ +P++LLLDe  saLD    + +++ l k+++  + tti ++h     +  +D i+v+n+g+i   g  ee+
  MMETSP1137-20121227|2755_1 514 HFNICNGYNLNIPAGAMCALCGPSGSGKSTIVGLMERFYDPQAGSLHLDGHNLKDLNVRwlRAQMSLVGQEPVLFSG-TVYENIAYGVLGNAtREQVEEAAKTGDAHNFItkvladGYDTDVGQGGGKLSGGQKQRVAIARAMIKKPEILLLDEATSALDNAAEKAVQTALDKIRETKKRTTITIAHRL-TTIRNSDIIAVVNRGVIVEQGNWEEL 727
                 78889999**********************************************99987436789**********76.*********76554044444455544444443111233445555667899***********************************************************86.57999************999988776 PP

>> TIGR01187  potA: polyamine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.7   0.0   5.9e-32   4.2e-30       1     189 [.     533     728 ..     533     736 .. 0.81

  Alignments for each domain:
  == domain 1    score: 102.7 bits;  conditional E-value: 5.9e-32
   TIGR01187   1 lLGpsGsGkttlLrllaGleeldsGkilldgedvte..vpaekrsvnvvfqsyaLfPhmtveenvafgLkmrk.vpkaeiker...vkeaLelvqleefak...rkpsqlsGGqrqrvalaravvkkPkiLLlDeplsaLDkkLrdqmqlelkalqeklGitvvlvthDqeealtmsdriavlrkGkiaqigepeeiy 189
                 l GpsGsGk+t++ l+  + ++++G++ ldg+++ +  v   + ++ +v q+  Lf   tv en+a+g+  +   ++ e +++    ++ ++ v  +++ +   +   +lsGGq+qrva+ara++kkP+iLLlDe+ saLD+   + +q+ l +++e    t++ ++h     +  sd iav+++G i+  g+ ee+ 
  MMETSP1137-20121227|2755_1 533 LCGPSGSGKSTIVGLMERFYDPQAGSLHLDGHNLKDlnVRWLRAQMSLVGQEPVLFS-GTVYENIAYGVLGNAtREQVEEAAKtgdAHNFITKVLADGYDTdvgQGGGKLSGGQKQRVAIARAMIKKPEILLLDEATSALDNAAEKAVQTALDKIRETKKRTTITIAHRL-TTIRNSDIIAVVNRGVIVEQGNWEELC 728
                 57********************************86114556778999********7.59********75433033334444400044455555555544311133468***********************************************************65.6899***************99999875 PP

>> TIGR01277  thiQ: thiamine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.5   0.0   7.2e-32   5.2e-30      16     206 ..     520     723 ..     500     729 .. 0.78

  Alignments for each domain:
  == domain 1    score: 102.5 bits;  conditional E-value: 7.2e-32
   TIGR01277  16 efdlsveaGervailGesGaGkstllnliaGflepasGeikvndkdhtrs..apyerpvsmlfqennlfahltvrqniglGlkpglkl.navqkek...vedvarqv...GiadylerlpeelsGGqrqrvalarclvrekpillldepfsaldpklreemlalvkkladekkltlllvthsl.....sdaaaiasqvvvvedGk 206
                  ++l++ aG   a+ G+sG+Gkst++ l+  f  p  G++++++++   +     +  +s++ qe  lf+  tv +ni+ G+       + ++  k    ++  ++v   G +  + +  ++lsGGq+qrva+ar ++++  illlde  sald++  + + + + k+ + kk+t + ++h+l     sd++a++++ v+ve+G+
  MMETSP1137-20121227|2755_1 520 GYNLNIPAGAMCALCGPSGSGKSTIVGLMERFYDPQAGSLHLDGHNLKDLnvRWLRAQMSLVGQEPVLFSG-TVYENIAYGVLGNATReQVEEAAKtgdAHNFITKVladGYDTDVGQGGGKLSGGQKQRVAIARAMIKKPEILLLDEATSALDNAAEKAVQTALDKIRETKKRTTITIAHRLttirnSDIIAVVNRGVIVEQGN 723
                 489*****************************************99765511567889***********96.9********86544330333333311144444455222444445666789***********************************************************873333356777777777777775 PP

>> TIGR00968  3a0106s01: sulfate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.2   0.0   8.9e-32   6.4e-30      12     218 ..     514     727 ..     500     736 .. 0.81

  Alignments for each domain:
  == domain 1    score: 102.2 bits;  conditional E-value: 8.9e-32
   TIGR00968  12 dfqalddvdlevktGslvallGpsGsGkstllrviaGlekpdsGrilleGrdvtrvkvr..dreiGfvfqhyalfkhltvrdniafGleir.kkdkakikakv...eellelvqleklgdry...psqlsGGqrqrvalaralavepqvllldepfgaldakvrkelrawlrklhdevkvttvfvthdqeealevadrivvlekGkieqvgsaeev 218
                 +f++ +  +l+++ G + al GpsGsGkst++ ++  + +p++G + l+G++   ++vr  + ++ +v q+  lf   tv +nia+G+  +  +++ +  ak    ++++  v  ++++        +lsGGq+qrva+ara+  +p++lllde  +ald    k +++ l k+ +  k tt+ ++h    ++  +d i+v+++G i + g  ee+
  MMETSP1137-20121227|2755_1 514 HFNICNGYNLNIPAGAMCALCGPSGSGKSTIVGLMERFYDPQAGSLHLDGHNLKDLNVRwlRAQMSLVGQEPVLFSG-TVYENIAYGVLGNaTREQVEEAAKTgdaHNFITKVLADGYDTDVgqgGGKLSGGQKQRVAIARAMIKKPEILLLDEATSALDNAAEKAVQTALDKIRETKKRTTITIAHRLT-TIRNSDIIAVVNRGVIVEQGNWEEL 727
                 57788899*********************************************999998556899**********86.9********75432344444444440004455444444444333111458***********************************************************865.5666888999999988877776665 PP

>> TIGR02142  modC_ABC: molybdate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.3   0.0   9.8e-32     7e-30      17     223 ..     522     731 ..     515     758 .. 0.83

  Alignments for each domain:
  == domain 1    score: 102.3 bits;  conditional E-value: 9.8e-32
   TIGR02142  17 dlelpgkgvtalFGrsGsGktslirliaGLtrpdegeivldgevlqdsrkkiilppekRrvgyvFqeArLFpHlsvrenLrYGlkraraeerriseek........vielL..giehLleRlpgkLsGGekqRvaigRAlLssPeLLlmDePLaaLDekrkkeilPyLerlsaelkiPilyvsHsldevarladrvvvledGrvkaagkleevlask 223
                 +l++p+  ++al G sGsGk++++ l+     p++g ++ldg+ l+d +        + +++ v qe  LF+  +v en+ YG+    ++e +++e++        ++++L  g +  +    gkLsGG kqRvai+RA++ +Pe+Ll+De  +aLD+   k +   L+++++  k   + ++H l+ +   +d + v++ G +  +g+ ee+ a +
  MMETSP1137-20121227|2755_1 522 NLNIPAGAMCALCGPSGSGKSTIVGLMERFYDPQAGSLHLDGHNLKDLNV----RWLRAQMSLVGQEPVLFSG-TVYENIAYGVLGNATRE-QVEEAAktgdahnfITKVLadGYDTDVGQGGGKLSGGQKQRVAIARAMIKKPEILLLDEATSALDNAAEKAVQTALDKIRETKKRTTITIAHRLTTIR-NSDIIAVVNRGVIVEQGNWEELCAME 731
                 68899999************************************988655....677899***********96.8********96544433.23222111222233999*9555789999*******************************************************************995.59*******************98764 PP

>> TIGR02982  heterocyst_DevA: ABC exporter ATP-binding subunit, DevA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.5   0.0   1.2e-30   8.8e-29      19     218 ..     516     717 ..     499     725 .. 0.81

  Alignments for each domain:
  == domain 1    score: 98.5 bits;  conditional E-value: 1.2e-30
   TIGR02982  19 qvlfdinleiepgeiviltGpsGsGkttlltligglrsvqeGelkvlgkelkgasekelvqvrrkiGyifqahnllesltaeqnvr...malelkeklsakeakakaeelleavglee...rldykpedlsgGqkqrvaiaralvarPklvladePtaaldkksgrevvellqklareqgttillvthdnrildvadrivkmedGk 218
                 ++ +  nl+i +g +  l GpsGsGk t++ l+  +   q G+l++ g++lk+++   +  +r ++ ++ q+  l++  t+ +n+    ++   +e++++++++ +a++++++v+ +     + +   +lsgGqkqrvaiara++++P+++l de t+ald+ + ++v + l k+ + +  t + ++h    +  +d i  +++G 
  MMETSP1137-20121227|2755_1 516 NICNGYNLNIPAGAMCALCGPSGSGKSTIVGLMERFYDPQAGSLHLDGHNLKDLN---VRWLRAQMSLVGQEPVLFS-GTVYENIAygvLGNATREQVEEAAKTGDAHNFITKVLADGydtDVGQGGGKLSGGQKQRVAIARAMIKKPEILLLDEATSALDNAAEKAVQTALDKIRETKKRTTITIAHRLTTIRNSDIIAVVNRGV 717
                 678899*******************************************999876...567899*******998886.5999***8222455777888888999999****99965543338888999**********************************************99999999988888644444444444444333 PP

>> TIGR03608  L_ocin_972_ABC: putative bacteriocin export ABC transporter, lactococcin 972 group
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.0   0.0     6e-30   4.3e-28      12     201 ..     516     708 ..     504     713 .. 0.83

  Alignments for each domain:
  == domain 1    score: 96.0 bits;  conditional E-value: 6e-30
   TIGR03608  12 eilkklslkiekGelvaivGesGsGKstlLnilgllekkdsgkvilegkekaklkskkaskllreklgylFqnfaLlenetveenlelalklkkkskkekekk....kkevlekv...glekklkkkiyelsgGekqRvalarillkeselilADEPtgsLDkknreevlellkelkee.gktiiivtHdpevaekad 201
                 +i +  +l+i +G + a++G sGsGKst++ ++ ++ +++ g++ l+g++   l +  + + lr +++ + q+  L  + tv en+  ++  + + ++ +e +      + + kv   g +++  +   +lsgG+kqRva+ar+++k++e++l DE t++LD+  +++v + l++++e+  +t i + H  +  +++d
  MMETSP1137-20121227|2755_1 516 NICNGYNLNIPAGAMCALCGPSGSGKSTIVGLMERFYDPQAGSLHLDGHN---L-KDLNVRWLRAQMSLVGQEPVLF-SGTVYENIAYGVLGNATREQVEEAAktgdAHNFITKVladGYDTDVGQGGGKLSGGQKQRVAIARAMIKKPEILLLDEATSALDNAAEKAVQTALDKIRETkKRTTITIAHRLTTIRNSD 708
                 688999********************************************...3.34567899**********9887.68********998776555433333011145666666333446677788889*********************************************98751578999999887766665 PP

>> TIGR02673  FtsE: cell division ATP-binding protein FtsE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.3   0.0   1.2e-29   8.8e-28       2     201 ..     500     705 ..     499     721 .. 0.78

  Alignments for each domain:
  == domain 1    score: 95.3 bits;  conditional E-value: 1.2e-29
   TIGR02673   2 ielekvskeya..agveaLkdvslkiekgeflfltGasGaGkttllklllgaekpsrGevevagedvarlrerelpllRrkigvvfqDfkllkdrtvlenvalalevrgk.keeeiqkr...veevlelv...gledkakalpeelsgGeqqRvaiaRaivnkPelllaDePtGnlDdelserildllkelnkr.Gttvivathdeelve 201
                 ie+++v ++y+   ++++ +  +l+i +g ++ l G+sG+Gk+t++ l+     p++G+++++g+++++l+   +  lR ++++v q+   l + tv+en+a  +  + + ++ e   +    ++ +++v   g +  + +   +lsgG +qRvaiaRa+++kPe+ll De t  lD++ ++ + + l ++ ++   t i  +h  + ++
  MMETSP1137-20121227|2755_1 500 IEVKEVVFAYPsaPHFNICNGYNLNIPAGAMCALCGPSGSGKSTIVGLMERFYDPQAGSLHLDGHNLKDLN---VRWLRAQMSLVGQEPV-LFSGTVYENIAYGVLGNATrEQVEEAAKtgdAHNFITKVladGYDTDVGQGGGKLSGGQKQRVAIARAMIKKPEILLLDEATSALDNAAEKAVQTALDKIRETkKRTTITIAHRLTTIR 705
                 788999999*954578999**********************************************998886...6689*********975.5678*******9764322202222222201133334443233556666677889***************************************99999986531344455556665555 PP

>> TIGR03873  F420-0_ABC_ATP: proposed F420-0 ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.5   0.0   1.8e-29   1.3e-27      15     223 ..     516     726 ..     508     731 .. 0.82

  Alignments for each domain:
  == domain 1    score: 94.5 bits;  conditional E-value: 1.8e-29
   TIGR03873  15 livddvdvtaPaGaltgllGPnGsGkstllrllaGllapdaGevdlagadlkalsrrararrvalveqdsdaevplsvrdvvalGriPhrslfaadsded....aevvdralarvelssladrdlstlsGGerqrvhlaralaqePklllldePtnhldvsaqlellalvrela.aegvtvvvalhdlnlaasvcdhvvvldgGrvvaaGppae 223
                  i ++ +++ PaGa+ +l GP GsGkst++ l+     p+aG+++l+g++lk l+ r    +++lv q+     + +v + +a G +   ++   + ++     ++ + ++la+   +++ +     lsGG++qrv +ara+ ++P++lllde t  ld +a  ++ +++ ++  +++ t++   h l+  ++ +d + v++ G +v  G+ +e
  MMETSP1137-20121227|2755_1 516 NICNGYNLNIPAGAMCALCGPSGSGKSTIVGLMERFYDPQAGSLHLDGHNLKDLNVRWLRAQMSLVGQEPV-LFSGTVYENIAYGVLGNATREQVEEAAKtgdaHNFITKVLADGYDTDVGQ-GGGKLSGGQKQRVAIARAMIKKPEILLLDEATSALDNAAEKAVQTALDKIReTKKRTTITIAHRLTT-IRNSDIIAVVNRGVIVEQGNWEE 726
                 57889999*************************************************9999*******865.56779999999888777666655555550000555555555555555443.4568************************************999888877762356677778899985.7889************9998665 PP

>> TIGR00960  3a0501s02: type II secretory pathway family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.6   0.0     2e-29   1.5e-27       2     201 ..     500     704 ..     499     718 .. 0.79

  Alignments for each domain:
  == domain 1    score: 94.6 bits;  conditional E-value: 2e-29
   TIGR00960   2 ikfeqvskaykgaaelal.dnvtvkiekGelvflvGhsGaGkstllklilgiekpsaGkirvsgqdltklrdrevpflrrqiGivfqdfkllsdrtvydnvalalriiGvkgreieervs......aalekvGlkdkakal...PvqlsgGeqqrvaiaravvnkPallladePtgnlddelsrdilelleevnraG.ttvlvathdenlv 201
                 i++++v  ay++a +  + ++ +++i+ G +  l G+sG+Gkst++ l+     p+aG +++ g++l+   d +v  lr q+ +v q+  +l   tvy+n+a    ++G  +re  e +       + + kv   + ++++     +lsgG++qrvaiara+++kP++ll de t+ ld++  + +   l++++++   t +  +h  + +
  MMETSP1137-20121227|2755_1 500 IEVKEVVFAYPSAPHFNIcNGYNLNIPAGAMCALCGPSGSGKSTIVGLMERFYDPQAGSLHLDGHNLK---DLNVRWLRAQMSLVGQEP-VLFSGTVYENIAYG--VLGNATREQVEEAAktgdahNFITKVLADGYDTDVgqgGGKLSGGQKQRVAIARAMIKKPEILLLDEATSALDNAAEKAVQTALDKIRETKkRTTITIAHRLTTI 704
                 788999999*999776542889*******************************************865...56799***********86.66778*****9875..78888876655443111111457788555555554111569*********************************************9876423445555655544 PP

>> TIGR01188  drrA: daunorubicin resistance ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   93.2   0.0   5.1e-29   3.6e-27       7     229 ..     516     745 ..     512     797 .. 0.79

  Alignments for each domain:
  == domain 1    score: 93.2 bits;  conditional E-value: 5.1e-29
   TIGR01188   7 kAvdgvnlkveegevfglLGPnGAGKtttikmLttllkPdsGtarvaGyDvvr.epdevRrsigvvpqkasvdedLtarenle..llgel..yglpkkeaeeraeellelvelkeaadkkvkt....ysgGmrrrlelaasliaqPevlfLDEPtiGLDprtrraiwdlieelkke.gvtilltthyleeadkladrvaiidkGkiiaedtpeeLKervgkevveverrdike 229
                 +  +g nl++++g + +l GP G GK+t++ ++     P++G+  + G+++   + + +R ++++v+q+  + +  t +en+   +lg+     ++++++   a++ +  v l +  d  v++    +sgG+++r+ +a+++i++Pe+l LDE t+ LD  + +a+   +++++++ + t++  +h l  +   +d +a++++G+i+ ++  eeL +  g+ + ++ +++ k 
  MMETSP1137-20121227|2755_1 516 NICNGYNLNIPAGAMCALCGPSGSGKSTIVGLMERFYDPQAGSLHLDGHNLKDlNVRWLRAQMSLVGQEPVLFSG-TVYENIAygVLGNAtrEQVEEAAKTGDAHNFITKV-LADGYDTDVGQgggkLSGGQKQRVAIARAMIKKPEILLLDEATSALDNAAEKAVQTALDKIRETkKRTTITIAHRLTTIR-NSDIIAVVNRGVIVEQGNWEELCAMEGGLFRKLAEKQQKA 745
                 566789********************************************97547889***********998876.89999862222222002334444444455666555.6777777775433339**********************************************9978999999****9986.59********************975555554433322222 PP

>> TIGR02211  LolD_lipo_ex: lipoprotein releasing system, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.5   0.0   1.4e-27   9.7e-26      17     219 ..     514     718 ..     500     720 .. 0.86

  Alignments for each domain:
  == domain 1    score: 88.5 bits;  conditional E-value: 1.4e-27
   TIGR02211  17 eievlkgvsleiekgelvaivGssGsGkstllhllggldkptsGevllkGkelsklssneraklrnkklGfiyqfhhlladftalenvamPll..iskkskkeaker..akellekv...glekrinkkpselsGGerqrvaiaralvnkPklvladePtgnldkktakkifelllelnkekntallvvthdlelakkldrvlelkdgkl 219
                 + ++ +g +l+i +g + a+ G sGsGkst++ l+  + +p +G++ l+G++l+ l+ +    lr  ++ ++ q   +l   t+ en+a  +l   ++++++ea+++  a++++ kv   g +  + +  ++lsGG++qrvaiara+++kP+++l de t+ ld+++ k++ + l +++++k+ + + ++h l+ +++ d    ++ g +
  MMETSP1137-20121227|2755_1 514 HFNICNGYNLNIPAGAMCALCGPSGSGKSTIVGLMERFYDPQAGSLHLDGHNLKDLNVR---WLR-AQMSLVGQEP-VLFSGTVYENIAYGVLgnATREQVEEAAKTgdAHNFITKVladGYDTDVGQGGGKLSGGQKQRVAIARAMIKKPEILLLDEATSALDNAAEKAVQTALDKIRETKKRTTITIAHRLTTIRNSDIIAVVNRGVI 718
                 5678999**********************************************999865...566.4689999965.56678********9993333455666655333789999995556778899999****************************************************************9999998888877765 PP

>> TIGR01166  cbiO: cobalt ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.1       7.9   5.7e+02     140     185 ..     260     307 ..     254     312 .. 0.77
   2 !   86.2   0.0   5.8e-27   4.2e-25       7     179 ..     517     692 ..     511     702 .. 0.83

  Alignments for each domain:
  == domain 1    score: -2.3 bits;  conditional E-value: 7.9
   TIGR01166 140 gavalrpdvllldePtagldpaGaeqlleilrklreeGkt..vvisth 185
                 gav   + + + de +a  d+     + ++++k  +eG +  +v+s+ 
  MMETSP1137-20121227|2755_1 260 GAVRTVASLAIEDEIAAKYDKGLIAAMQATIDKSFKEGLSlgIVLSAT 307
                 667777888899999999999999999999999999996422677765 PP

  == domain 2    score: 86.2 bits;  conditional E-value: 5.8e-27
   TIGR01166   7 vlkglnlavergevlallGanGaGkstlllhlnGllrPksGkvlldGeeldysrkgllelrkkvalvlqdpddqlfaadvdedvafgpl.nlGlseaeverrvrea...laavdisgleerpth...llsgGekkrvaiagavalrpdvllldePtagldpaGaeqlleilrklreeGkt 179
                 + +g nl++  g + al G+ G+Gkst++  ++    P++G + ldG++l+    +++ lr +++lv q+p   lf+ +v e++a+g l n   ++ e  ++  +a   +++v ++g++    +   +lsgG+k+rvaia a++ +p++lllde t+ ld a ++ + ++l+k+re  k 
  MMETSP1137-20121227|2755_1 517 ICNGYNLNIPAGAMCALCGPSGSGKSTIVGLMERFYDPQAGSLHLDGHNLK--DLNVRWLRAQMSLVGQEP--VLFSGTVYENIAYGVLgNATREQVEEAAKTGDAhnfITKVLADGYDTDVGQgggKLSGGQKQRVAIARAMIKKPEILLLDEATSALDNAAEKAVQTALDKIRETKKR 692
                 66899******************************************9986..345667788888888887..7*************9834444444555555555333789999***9866543338**********************************************997653 PP

>> TIGR03410  urea_trans_UrtE: urea ABC transporter, ATP-binding protein UrtE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.5   0.0   5.3e-27   3.8e-25      14     219 ..     516     727 ..     500     732 .. 0.81

  Alignments for each domain:
  == domain 1    score: 86.5 bits;  conditional E-value: 5.3e-27
   TIGR03410  14 evlrdvslevekgevvavlGrngvGkttllkalvgllkvksGeielegeditklkpeervkaGiayvpqGreifpkltveenlelglealkkk.....ekkipeeiyelFPvlkemlk....RrgGdLsGGqqqqlaiaRaLvtePklllLDePteGiqPsiikeiekvikelakekdlaillveqvldfaleladrylvlerGevvaegekeel 219
                 ++ ++ +l++++g + a+ G  g Gk+t++  +   ++ ++G+++l+g+++++l+  +  +a ++ v q   +f+  tv en+  g+   +++     + k  +    +  vl +  +      gG+LsGGq+q +aiaRa++++P++llLDe t  +  +  k +++++++++++k+ + + + + l   ++ +d ++v++rG +v++g+ eel
  MMETSP1137-20121227|2755_1 516 NICNGYNLNIPAGAMCALCGPSGSGKSTIVGLMERFYDPQAGSLHLDGHNLKDLNV-RWLRAQMSLVGQEPVLFSG-TVYENIAYGVLGNATReqveeAAKTGDAHNFITKVLADGYDtdvgQGGGKLSGGQKQRVAIARAMIKKPEILLLDEATSALDNAAEKAVQTALDKIRETKKRTTITIAHRLTTIRN-SDIIAVVNRGVIVEQGNWEEL 727
                 688999**********************************************9986.5678899*****9888876.9******998665544223322222222223345666543312226799****************************************************999999999998777.9**************998875 PP

>> TIGR03005  ectoine_ehuA: ectoine/hydroxyectoine ABC transporter, ATP-binding protein EhuA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.1   0.0     1e-25   7.4e-24      12     234 ..     514     727 ..     500     732 .. 0.84

  Alignments for each domain:
  == domain 1    score: 82.1 bits;  conditional E-value: 1e-25
   TIGR03005  12 eltvldglelevaaGekvaliGpsGsGkstilrilmtletideGsikvegeqlyhmkgrkGklvpadekhlrkvrekiGmvfqsfnlfphktvldnvteapv...lvkGvaraeaekravelldmvGladkad....alpaqlsGGqkqrvaiaralalrpkvllfdevtsaldpelveevlnvlrrlasetdltmllvthemgfarefadrvlffdkGkiveeGkpdei 234
                 ++++ +g +l++ aG   al GpsGsGksti+ ++  +   + Gs++++g++l  ++             +r +r ++ +v q+  lf   tv +n++   +       v+ a+    a +++  v lad  d    +   +lsGGqkqrvaiara+  +p +ll+de+tsald    + v + l ++ + ++ t + ++h++   r+ +d +   ++G ive+G+ +e+
  MMETSP1137-20121227|2755_1 514 HFNICNGYNLNIPAGAMCALCGPSGSGKSTIVGLMERFYDPQAGSLHLDGHNLKDLN-------------VRWLRAQMSLVGQEPVLFS-GTVYENIAYGVLgnaTREQVEEAAKTGDAHNFITKV-LADGYDtdvgQGGGKLSGGQKQRVAIARAMIKKPEILLLDEATSALDNAAEKAVQTALDKIRETKKRTTITIAHRLTTIRN-SDIIAVVNRGVIVEQGNWEEL 727
                 578899***************************999999999999999998877666.............7889999*******99997.589999976655111445566666666677777766.566555111155678***********************************99*************************9997.8***************99987 PP

>> TIGR02769  nickel_nikE: nickel import ATP-binding protein NikE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.5   0.0   5.1e-26   3.7e-24      24     250 ..     515     739 ..     500     746 .. 0.85

  Alignments for each domain:
  == domain 1    score: 83.5 bits;  conditional E-value: 5.1e-26
   TIGR02769  24 kavldnvslsleeGetvallGrsGaGkstlarlllGlekPakGevsfrGqdlakldrkqrkafrrdvqlvfqdsi..savnprksvreiigePlrhltsldeserkariaellelv..elrsevldklPrqlsGGqlqriniaralavePklivldeavsnldlvlqasilellkklkqefGlaylfithdlrlvqkfaqrvlvldeGqiveeikvaellsfkhpagrllq 250
                  ++ ++ +l++ +G   al G sG+Gkst+  l+  +  P+ G+++  G++l+ l+    + +r ++ lv q+ +  s     + +  ++g+  r  ++++e+++   +++++ +v  +  + ++ +   +lsGGq qr++iara+  +P++++ldea s ld     ++   l k+++    + + i+h l  +++ ++ ++v+++G ive+ +  el +++    r+l 
  MMETSP1137-20121227|2755_1 515 FNICNGYNLNIPAGAMCALCGPSGSGKSTIVGLMERFYDPQAGSLHLDGHNLKDLN---VRWLRAQMSLVGQEPVlfSGTVYENIAYGVLGNATR--EQVEEAAKTGDAHNFITKVlaDGYDTDVGQGGGKLSGGQKQRVAIARAMIKKPEILLLDEATSALDNAAEKAVQTALDKIRETKKRTTITIAHRLTTIRN-SDIIAVVNRGVIVEQGNWEELCAMEGGLFRKLA 739
                 56778899*******************************************99997...57788899****996422333334444455666555..578899999999999988833344667788999**************************************************************99865.9**************999999888877777765 PP

>> TIGR03258  PhnT: 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.8   0.0   1.4e-25   9.9e-24      25     227 ..     519     727 ..     495     738 .. 0.79

  Alignments for each domain:
  == domain 1    score: 81.8 bits;  conditional E-value: 1.4e-25
   TIGR03258  25 ddlsleieaGellallGksGsGkttllravaGfvkadGGrllvadrdlthlpp..ykrnlallvqnyalfphlkveenvafGlrar.kqskaliaervadalklvq..lsd.aaa...rlpaqlsGGqqqrvalaralvvrpdvllldeplsaldaqlrasvveelkalhrelpeltvlyvthdrdealvladkillmkeGslialGetral 227
                 +   l+i aG + al G+sGsGk+t++ ++  f  ++ G l + +++l  l     + +++l+ q+  lf   +v+en+a+G+  +  + + + a +  da   +   l+d + +   +   +lsGGq+qrva+ara++ +p++lllde  sald    ++v+  l ++ +     t + ++h    ++  +d i +++ G ++++G+ ++l
  MMETSP1137-20121227|2755_1 519 NGYNLNIPAGAMCALCGPSGSGKSTIVGLMERFYDPQAGSLHLDGHNLKDLNVrwLRAQMSLVGQEPVLFSG-TVYENIAYGVLGNaTREQVEEAAKTGDAHNFITkvLADgYDTdvgQGGGKLSGGQKQRVAIARAMIKKPEILLLDEATSALDNAAEKAVQTALDKIRETKK-RTTITIAHRL-TTIRNSDIIAVVNRGVIVEQGNWEEL 727
                 56789*******************************************98865215678999********75.9********85431333444555556665443211454233311134568*********************************************977655.5666778855.56788999999999999999987766 PP

>> TIGR01184  ntrCD: nitrate ABC transporter, ATP-binding proteins C and D
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.2   0.0   2.5e-25   1.8e-23       3     185 ..     520     710 ..     518     727 .. 0.77

  Alignments for each domain:
  == domain 1    score: 81.2 bits;  conditional E-value: 2.5e-25
   TIGR01184   3 dvdleikkgefislighsgcgkstllnliaglekptsgavilegkeitepg....pdrmvvfqnysllpwltvrenialav..davlrdlskserreiveehielv...glreaadkrpeqlsggmkqrvaiaralsirpklllldepfgaldaltreelqekllkiveearvtvlmvthdvdealllsdrv 185
                 + +l+i  g + +l g sg gkst++ l+  +  p +g+++l+g+++++        +m +  +  +l   tv+enia  v  +a +++++++ +    ++ i  v   g  +   +  ++lsgg kqrvaiara+  +p++lllde   ald  + + +q  l ki e ++ t++ ++h +  ++  sd +
  MMETSP1137-20121227|2755_1 520 GYNLNIPAGAMCALCGPSGSGKSTIVGLMERFYDPQAGSLHLDGHNLKDLNvrwlRAQMSLVGQEPVLFSGTVYENIAYGVlgNATREQVEEAAKTGDAHNFITKVladGYDTDVGQGGGKLSGGQKQRVAIARAMIKKPEILLLDEATSALDNAAEKAVQTALDKIRETKKRTTITIAHRLT-TIRNSDII 710
                 5699*****************************************99976522224567766666777789*******9984433333333333333333333333112555555667789***********************************************************875.34445555 PP

>> TIGR02770  nickel_nikD: nickel import ATP-binding protein NikD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.5   0.0   1.1e-23   8.2e-22       4     213 ..     520     727 ..     517     740 .. 0.82

  Alignments for each domain:
  == domain 1    score: 75.5 bits;  conditional E-value: 1.1e-23
   TIGR02770   4 dvnlslkrgkvlalvGesGsGksltalailglldkeltktsGeilldgkelaalalr..greialilqnPrsafnPll.tikeqlletlkaleklskqake.livealeavgLeeaeevlkkypfelsGGmlqRvmialallleaplliaDePttdlDvvvqaevLklleelrekrglgillithDlgvvaeladevavmekGkivergtvkel 213
                 + nl++  g ++al G sGsGks+    i+gl++      +G++ ldg++l++l++r    +++l+ q+P+     ++ +i+  +l     +e++++ ak   + + +++v  +  ++ + +   +lsGG  qRv ia a++ ++ +l+ De t++lD ++++ v   l+++re++  + + i+h l+ + +  d +av+++G ive+g+ +el
  MMETSP1137-20121227|2755_1 520 GYNLNIPAGAMCALCGPSGSGKST----IVGLMERFYDPQAGSLHLDGHNLKDLNVRwlRAQMSLVGQEPVLFSGTVYeNIAYGVLGNAT-REQVEEAAKTgDAHNFITKVLADGYDTDVGQGGGKLSGGQKQRVAIARAMIKKPEILLLDEATSALDNAAEKAVQTALDKIRETKKRTTITIAHRLTTI-RNSDIIAVVNRGVIVEQGNWEEL 727
                 67999*****************96....5677776677889************977733578999*****97666665255555554443.3444444443045555566655556677889999***************************************************************99.568**************998886 PP

>> TIGR01978  sufC: FeS assembly ATPase SufC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.0   0.0   1.5e-22   1.1e-20      14     230 ..     516     725 ..     504     736 .. 0.83

  Alignments for each domain:
  == domain 1    score: 72.0 bits;  conditional E-value: 1.5e-22
   TIGR01978  14 eiLkglnlevkkGevhaimGpnGsGkstLskvlaghekyevtsGeiklkgqdlleleveeraraGlflafqapeeipGvsnkeflrsalnavrkargeeeldllefekllkeklelleldeelleRslneGfsGGekkrneilqlallePklaiLDeiDsGlDvDalkivaegvnklree.ekalliithyerllelikPdvvhvlldGrivksGdve 230
                 +i +g nl++ +G++ a+ Gp GsGkst++  +  ++ y  ++G+++l+g++l +l+v    ra + l  q p+  +G   +++   +l  +++++ ee+ ++ + ++ +++ l+   +d+++ +       sGG k+r  i + ++ +P++ +LDe+ s lD  a k+v + ++k+re+ +++++ i+h  rl    + d + v+ +G iv++G+ e
  MMETSP1137-20121227|2755_1 516 NICNGYNLNIPAGAMCALCGPSGSGKSTIVGLM--ERFYDPQAGSLHLDGHNLKDLNVRW-LRAQMSLVGQEPVLFSGTVYENIAYGVLGNATREQVEEAAKTGDAHNFITKVLAD-GYDTDVGQG--GGKLSGGQKQRVAIARAMIKKPEILLLDEATSALDNAAEKAVQTALDKIRETkKRTTITIAH--RLTTIRNSDIIAVVNRGVIVEQGNWE 725
                 7899*************************9876..45688899**************975.57778999*********99999998888666656667766776666666555443.344433332..2348**********************************************995666777777..78888899***************976 PP

>> TIGR03415  ABC_choXWV_ATP: choline ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.3   0.0   1.7e-21   1.2e-19      40     252 ..     518     727 ..     513     731 .. 0.81

  Alignments for each domain:
  == domain 1    score: 68.3 bits;  conditional E-value: 1.7e-21
   TIGR03415  40 vadasldveeGeilvlmGlsGsGkssllravnglnpvsrGkvlvkdedkevdvakcdeatlrklrtkrvsmvfqkfallPWrtveenvafGlels.Gvakaerrkrveeqlelvg..laeWadkkv....gelsGGmqqrvGlarafateadillmdePfsaldPliraklqdellelqkklkktivfvshdldealklGnriaimegGrivqlgtpeei 252
                 +++ +l++  G ++ l G sGsGks+++  + ++     G++++       d  +++  ++r lr  ++s+v q+  l+   tv en+a+G+  +    + e   +  +  +++   la+  d+ v    g lsGG +qrv +ara+  + +ill+de  sald    + +q  l +++++ k+t + ++h l   ++  + ia+++ G iv +g+ ee+
  MMETSP1137-20121227|2755_1 518 CNGYNLNIPAGAMCALCGPSGSGKSTIVGLMERFYDPQAGSLHL-------DGHNLKDLNVRWLRA-QMSLVGQEPVLFS-GTVYENIAYGVLGNaTREQVEEAAKTGDAHNFITkvLADGYDTDVgqggGKLSGGQKQRVAIARAMIKKPEILLLDEATSALDNAAEKAVQTALDKIRETKKRTTITIAHRLT-TIRNSDIIAVVNRGVIVEQGNWEEL 727
                 67789***************************999888888865.......555666778899996.68*****988775.79********73220222223333333333333223666666665222268*************************************************************7.69999**************998886 PP

>> TIGR00955  3a01204: pigment precursor permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.1   0.0   3.5e-21   2.5e-19      45     255 ..     522     728 ..     493     758 .. 0.82

  Alignments for each domain:
  == domain 1    score: 67.1 bits;  conditional E-value: 3.5e-21
   TIGR00955  45 sGvaksGellAvlGsSGaGKtTLlnalafrsekglkvsgdvllnGekv...eakemraisayvqqddlfiptltvrehLmfsahlrlkrrltkk.ekrerveevleelgLrkcadtrigvpgrvkglSgGerkRlalaselltdPilLfcDEPTsGLDsfsaasvvkvLkklaq.kgktviltiHQPsselfelfdkiillaeGrvvylGspeeav 255
                    +  G + A+ G+SG+GK+T++  +           g+  l+G+++   + + +ra  + v q+ +++   tv+e++ +       r+  ++  k    ++ ++++ L +  dt +g+ g    lSgG+++R+a+a  ++++P +L++DE Ts LD +  + v  +L k+ + k +t i+  H  +    ++ d i ++++G +v +G+ ee++
  MMETSP1137-20121227|2755_1 522 NLNIPAGAMCALCGPSGSGKSTIVGLMERFYDP-QA--GSLHLDGHNLkdlNVRWLRAQMSLVGQEPVLFS-GTVYENIAYGVLGNATREQVEEaAKTGDAHNFITKV-LADGYDTDVGQGGG--KLSGGQKQRVAIARAMIKKPEILLLDEATSALDNAAEKAVQTALDKIREtKKRTTITIAHRLT--TIRNSDIIAVVNRGVIVEQGNWEELC 728
                 556778****************99866544333.33..468999988611156778899999999998875.59*******998888777666669**********98.9*********8885..8**********************************99999999****8625667777778754..46777888888888888888887776 PP

>> TIGR03411  urea_trans_UrtD: urea ABC transporter, ATP-binding protein UrtD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.7   0.0   6.9e-21     5e-19      15     229 ..     515     727 ..     500     732 .. 0.89

  Alignments for each domain:
  == domain 1    score: 66.7 bits;  conditional E-value: 6.9e-21
   TIGR03411  15 fkalndlslsveegelrviiGpnGaGkttllDvitGktrpdeGsvlfkgkdltklkeaeiarlGigRkfqkpsvfeeltvlenlelalkadksvlallfarlskeekerieevleligLeekadkkaglLshGqkqwLeigmllvqepkllllDePvaGmtdeetektaellkela..kersvvvvehDmefvrelaekvtvlheGkvlaeGsldev 229
                 f+  n  +l++ +g + ++ Gp G+Gk+t++ ++     p++Gs+ ++g++l+ l+     r+ ++   q+p +f+  tv en+   +  + +  ++  a  + ++++ i++vl+  g ++ + +  g+Ls Gqkq++ i+  ++++p++lllDe ++ + ++ ++ +   l +++  k+r+ + + h ++ +r+ ++ ++v+++G ++ +G+ +e+
  MMETSP1137-20121227|2755_1 515 FNICNGYNLNIPAGAMCALCGPSGSGKSTIVGLMERFYDPQAGSLHLDGHNLKDLNVR-WLRAQMSLVGQEPVLFS-GTVYENIAYGVLGNATREQVEEAAKTGDAHNFITKVLAD-GYDTDVGQGGGKLSGGQKQRVAIARAMIKKPEILLLDEATSALDNAAEKAVQTALDKIRetKKRTTITIAHRLTTIRN-SDIIAVVNRGVIVEQGNWEEL 727
                 7788999*********************************************999865.5577777788***9996.69*******999998888888888888999999999986.7899999**************************************99999999999996226789***********98.5689************99886 PP

>> TIGR02324  CP_lyasePhnL: phosphonate C-P lyase system protein PhnL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.8   0.0   1.6e-07   1.1e-05      21      67 ..     515     561 ..     506     581 .. 0.90
   2 !   41.0   0.1   4.2e-13     3e-11     150     208 ..     641     700 ..     637     714 .. 0.83

  Alignments for each domain:
  == domain 1    score: 22.8 bits;  conditional E-value: 1.6e-07
   TIGR02324  21 lpvlkevsleveaGelvalsGksGaGkstllkslyanYlpesgrilv 67 
                  ++++  +l++ aG + al G+sG+Gkst++  + + Y p++g++ +
  MMETSP1137-20121227|2755_1 515 FNICNGYNLNIPAGAMCALCGPSGSGKSTIVGLMERFYDPQAGSLHL 561
                 57889999***********************************9876 PP

  == domain 2    score: 41.0 bits;  conditional E-value: 4.2e-13
   TIGR02324 150 fsGGekqRvniaraliadrPiLLLdePtasLdaanrkvvvelikeaka.rgaaligifhd 208
                  sGG kqRv iara+i++  iLLLde t++Ld+a  k+v   ++++++ +  + i+i h 
  MMETSP1137-20121227|2755_1 641 LSGGQKQRVAIARAMIKKPEILLLDEATSALDNAAEKAVQTALDKIREtKKRTTITIAHR 700
                 69***************888*****************99988888765145677888885 PP

>> TIGR02633  xylG: D-xylose ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.9   0.0   2.8e-20     2e-18      17     220 ..     518     719 ..     501     731 .. 0.86

  Alignments for each domain:
  == domain 1    score: 63.9 bits;  conditional E-value: 2.8e-20
   TIGR02633  17 ldnidlklraGeivslcGenGaGkstlmkvlsgvyphGtydGeilfegeelkassirdterkGiviihqeltlvkelsvleniflGneitlkGglmdydamvlrakellrelkld..asnvtrpvsdlGlGqqqlveiakalnkqvrllildepsasl...teketeilldiirdlkakgvacvyishkleevkavsdtisvirdGqhv 220
                  ++ +l++ aG + +lcG  G+Gkst++ ++   y      G ++ +g++lk  ++r   r+ ++++ qe +l    +v eni  G        +++++a +  a++++ ++  d  +++v +  ++l +Gq+q v ia+a+ k+  +l+lde +++l   +ek +++ ld ir+ k+++   + i+h+l  ++  sd i+v+  G  v
  MMETSP1137-20121227|2755_1 518 CNGYNLNIPAGAMCALCGPSGSGKSTIVGLMERFYDP--QAGSLHLDGHNLKDLNVRWL-RAQMSLVGQEPVLFSG-TVYENIAYGVLGNATREQVEEAAKTGDAHNFITKVLADgyDTDVGQGGGKLSGGQKQRVAIARAMIKKPEILLLDEATSALdnaAEKAVQTALDKIRETKKRT--TITIAHRLTTIRN-SDIIAVVNRGVIV 719
                 578899**************************99965..57***************975.7889*******99876.8*****9887666666679999*************98833456677889999****************************943345678999******99996..6899*****9986.99**999988766 PP

>> TIGR03771  anch_rpt_ABC: anchored repeat-type ABC transporter, ATP-binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.0   0.1   9.5e-20   6.8e-18       2     193 ..     524     720 ..     523     731 .. 0.85

  Alignments for each domain:
  == domain 1    score: 63.0 bits;  conditional E-value: 9.5e-20
   TIGR03771   2 svdkGellgllGpnGaGkttllrailglikvakGsvkvagkssrkgrreiGyvpqrhefawdfpidveqtvlsGra.gliGllrrpkkadfaavadalervk..lteladrpvGe....lsGGqrqrvlvaralavkpslllldepftGldlpsqellvelfeelagegt.ailmtthdlaeavatcdrvvllngrvvad 193
                 ++ +G + +l Gp G+Gk+t++  +  +  +++Gs++++g+  +    ++ ++  +  +  + p+  ++tv +  a g +G   r ++++ a + da + ++  l++  d  vG+    lsGGq+qrv +ara+  kp++lllde  + ld+ +++ +   + ++ + ++ + +  +h l+ ++  +d + ++n+ v+ +
  MMETSP1137-20121227|2755_1 524 NIPAGAMCALCGPSGSGKSTIVGLMERFYDPQAGSLHLDGH--NLKDLNVRWLRAQMSLVGQEPVLFSGTVYENIAyGVLGNATREQVEEAAKTGDAHNFITkvLADGYDTDVGQgggkLSGGQKQRVAIARAMIKKPEILLLDEATSALDNAAEKAVQTALDKIRETKKrTTITIAHRLT-TIRNSDIIAVVNRGVIVE 720
                 567899**********************************7..455678999999999*************98765499***************9998755323888888888644444***************************************99999998766515555667765.6899999*9***998865 PP

>> TIGR01271  CFTR_protein: cystic fibrosis transmembrane conductor regulator (CFTR)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0   3.1e-06   0.00022    1215    1312 ..     497     596 ..     487     598 .. 0.91
   2 !   52.3   0.0   5.1e-17   3.7e-15     445     639 ..     521     732 ..     516     750 .. 0.81

  Alignments for each domain:
  == domain 1    score: 16.6 bits;  conditional E-value: 3.1e-06
   TIGR01271 1215 ggqmtvkdltakyteagr.avlqdlsfsveagqrvgllgrtgsgkstllsallrlls.tegeiqidgvswnsvtlqkwrkafgvipqkvfilsgtfrknl 1312
                  +g+++vk++   y +a +  + +   + + ag    l g +gsgkst++  + r+ +   g +++dg   + + ++  r  + ++ q   ++sgt   n+
  MMETSP1137-20121227|2755_1  497 KGHIEVKEVVFAYPSAPHfNICNGYNLNIPAGAMCALCGPSGSGKSTIVGLMERFYDpQAGSLHLDGHNLKDLNVRWLRAQMSLVGQEPVLFSGTVYENI 596 
                  79***********99976378999******************************9982569**************999999**************99886 PP

  == domain 2    score: 52.3 bits;  conditional E-value: 5.1e-17
   TIGR01271 445 islklekgqllavagstgsgkssllmmilgelepsegkikhsg.............risfspqvswimpgtikdniifglsydeyryt..svikacqleedia.llaekdktvlgeggitlsggqrarislaravykdadlylldspfsyldvvtekeifesclckllank..trilvtsklehlkkadkilllhegscyfygtfselqakkp 639
                  +l++  g + a++g +gsgks+++ ++    +p  g ++  g             ++s   q + ++ gt+ +ni +g+  +  r +     k+ +  + i+ +la+  +t +g+gg  lsggq+ r+++ara+ k  ++ lld   s ld  +ek + ++ l k+  +k  t i ++ +l  ++++d i ++  g+    g + el a + 
  MMETSP1137-20121227|2755_1 521 YNLNIPAGAMCALCGPSGSGKSTIVGLMERFYDPQAGSLHLDGhnlkdlnvrwlraQMSLVGQEPVLFSGTVYENIAYGVLGNATREQveEAAKTGDAHNFITkVLADGYDTDVGQGGGKLSGGQKQRVAIARAMIKKPEILLLDEATSALDNAAEKAV-QTALDKIRETKkrTTITIAHRLTTIRNSDIIAVVNRGVIVEQGNWEELCAMEG 732
                 5788999****************99888888888888776555322323232222257889999999*************9988886411455666677778735789999**********************************************97.577888877661255777899***********************999988765 PP

>> TIGR03740  galliderm_ABC: lantibiotic protection ABC transporter, ATP-binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.1   0.0   7.2e-19   5.2e-17      15     211 ..     517     727 ..     501     739 .. 0.72

  Alignments for each domain:
  == domain 1    score: 60.1 bits;  conditional E-value: 7.2e-19
   TIGR03740  15 vvnnvslkvkknsvygllGpnGaGkstllklltGllrktsGeilldgre...wtrkdlkkiGsliesPalyenltarenlkv....rtlllglpe........srieevlkivdlentekkkakqfslGmkqrlGiaiallnkPkllildePtnGldPlGiqelreliksfpe.kGitvilsshilsevelladhiGiiseGklkyekkidkd 211
                 + n  +l+++  ++ +l Gp G+Gkst++ l+  +  +++G++ ldg++   ++ + l+   sl+ + ++    t +en+      +++ ++++e        + i +vl   + +++  +  +++s G kqr+ ia a+++kP++l+lde t  ld    + ++  +  ++e k  t i  +h l+ +++ +d i +++ G++  +++ ++ 
  MMETSP1137-20121227|2755_1 517 ICNGYNLNIPAGAMCALCGPSGSGKSTIVGLMERFYDPQAGSLHLDGHNlkdLNVRWLRAQMSLVGQEPVLFSGTVYENIAYgvlgNATREQVEEaaktgdahNFITKVLAD-GYDTDVGQGGGKLSGGQKQRVAIARAMIKKPEILLLDEATSALDNAAEKAVQTALDKIREtKKRTTITIAHRLTTIRN-SDIIAVVNRGVIVEQGNWEEL 727
                 678899*****************************************97222233445555556655444444555555543111122223332210000000334444433.344455567789**********************************999999888777542556777779*****986.8***********999887765 PP

>> TIGR03522  GldA_ABC_ATP: gliding motility-associated ABC transporter ATP-binding subunit GldA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.4   0.0   4.6e-18   3.3e-16      16     248 ..     516     760 ..     499     792 .. 0.77

  Alignments for each domain:
  == domain 1    score: 57.4 bits;  conditional E-value: 4.6e-18
   TIGR03522  16 kaldevsfeaekGeivGflGPnGaGkstlmkiltgylkadsGsvavagedvlknslevrkniGylPehnPlyldlyvreylef....saalyklkgrklkkrveelielv...GlkaeqhkkigalskGyrqrvGlakallhdPkvlildePttGldPnqlveirevikei..akdktvilsthimqevealcdrviiinkGkivadkkleelkaaek..kkvievefeeei...dlqllekleevs 248
                 ++ +   +++  G +  + GP G+Gkst++ ++  +  +++Gs++++g++  + +++  +    l   +P+     v e +++    +a+  ++++ ++    +++i +v   G  ++  +  g+ls G +qrv +a+a++ +P++l+lde t+ ld     +++  + +i  +k++t i  +h +  ++   d + ++n+G iv + + eel a+e    + +  e +++    d++ll+ +e v+
  MMETSP1137-20121227|2755_1 516 NICNGYNLNIPAGAMCALCGPSGSGKSTIVGLMERFYDPQAGSLHLDGHNLKDLNVRWLRAQMSLVGQEPVLFSGTVYENIAYgvlgNATREQVEEAAKTGDAHNFITKVladGYDTDVGQGGGKLSGGQKQRVAIARAMIKKPEILLLDEATSALDNAAEKAVQTALDKIreTKKRTTITIAHRLTTIRN-SDIIAVVNRGVIVEQGNWEELCAMEGglFRKL-AEKQQKAsaeDAHLLKDVEAVE 760
                 566777888999***************************************9999888888888899999999999999888755456788899999998889999988766688888889999***********************************99999999999933456688888898888875.678889***************99987432222.2222222011444555555554 PP

>> TIGR01189  ccmA: heme ABC exporter, ATP-binding protein CcmA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.5   0.0   1.7e-17   1.2e-15      16     179 ..     518     692 ..     513     710 .. 0.75

  Alignments for each domain:
  == domain 1    score: 55.5 bits;  conditional E-value: 1.7e-17
   TIGR01189  16 leglsfelaaGealvveGpnGiGKttLLRilaGLlkpesGevelndkelaeqrdelaeellylgHldglKaeLsalEnLkfyaallq.......seqk.tveealekvgLsgledlpva....qLsAGqkrRlalarLllskaplWiLDEPttalDkegvellaellaaHlargGi 179
                  +g ++++ aG + ++ Gp G+GK+t++ ++     p++G+++l++++l++ + ++ ++ + l  ++ +  + ++ En+ +     +       ++++ ++++ ++kv  +g++ + v     +Ls Gqk+R+a+ar +++k  + +LDE t alD+++ + ++++l++  ++   
  MMETSP1137-20121227|2755_1 518 CNGYNLNIPAGAMCALCGPSGSGKSTIVGLMERFYDPQAGSLHLDGHNLKDLNVRWLRAQMSLVGQEPVLFSGTVYENIAYGVLGNAtreqveeAAKTgDAHNFITKVLADGYD-TDVGqgggKLSGGQKQRVAIARAMIKKPEILLLDEATSALDNAAEKAVQTALDKIRETKKR 692
                 566789999*****************************************99988887766666677777889******99532222112222222224566666666555554.444312237***********************************99999998876555444 PP

>> TIGR01288  nodI: nodulation ABC transporter NodI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.3   0.0   2.5e-16   1.8e-14      19     221 ..     517     726 ..     500     734 .. 0.81

  Alignments for each domain:
  == domain 1    score: 51.3 bits;  conditional E-value: 2.5e-16
   TIGR01288  19 vvndlsftiaagecfgllgpngagkstiarlvlglispdegkitvlgepv.pararlarakigvvpqfdnldreftvrenllvfgryfglstreieevips..llefar..leskadvrvad....lsggmkrrltlaralindpqllildepttgldpharhliwerlrsllargktilltthlmeeaerlcdrlcvleagrkiaegrpda 221
                 + n   + i ag    l gp g+gksti  l+  +  p+ g + + g++    ++r  ra++ +v q   l    tv en+  +g   + +  ++ee+  +    +f    l    d+ v +    lsgg k+r+++ara+i+ p++l+lde t+ ld  a + +   l  +    k   +t      + r  d + v++ g  + +g+ + 
  MMETSP1137-20121227|2755_1 517 ICNGYNLNIPAGAMCALCGPSGSGKSTIVGLMERFYDPQAGSLHLDGHNLkDLNVRWLRAQMSLVGQEPVL-FSGTVYENI-AYGVLGNATREQVEEAAKTgdAHNFITkvLADGYDTDVGQgggkLSGGQKQRVAIARAMIKKPEILLLDEATSALDNAAEKAVQTALDKIRETKKRTTITIAHRLTTIRNSDIIAVVNRGVIVEQGNWEE 726
                 5677888999**********************************9998761569*************8877.5679****6.68876655555678776541145564322556667777533333***************************************99999998777766666555556779999999999999888887665 PP

>> TIGR03719  ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.0   6.3e-05    0.0045     337     381 ..     517     561 ..     495     600 .. 0.83
   2 !   34.9   0.0   1.9e-11   1.4e-09     160     276 ..     639     760 ..     604     786 .. 0.76

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 6.3e-05
   TIGR03719 337 liddlsfklpkggivGviGpnGaGkstlfklitgkekpdsGelki 381
                 + +  ++++p+g++  + Gp G+Gkst++ l+    +p++G+l++
  MMETSP1137-20121227|2755_1 517 ICNGYNLNIPAGAMCALCGPSGSGKSTIVGLMERFYDPQAGSLHL 561
                 5678899**********************************9987 PP

  == domain 2    score: 34.9 bits;  conditional E-value: 1.9e-11
   TIGR03719 160 eklsGGekrrvalcrlllekPdlllldePtnhldaesvaW....lekflkeykGtvvavthdryfldnvaeWileldrGegipykgnysswleqke...krleqeekeeaarkkalkkeleWvr 276
                  klsGG+k+rva++r +++kP++lllde t  ld  + +     l+k  +  k t + ++h    + n ++ i  ++rG  +  +gn+ +         ++l++++++ +a++ +l k++e v+
  MMETSP1137-20121227|2755_1 639 GKLSGGQKQRVAIARAMIKKPEILLLDEATSALDNAAEKAvqtaLDKIRETKKRTTITIAHRLTTIRN-SDIIAVVNRGVIV-EQGNWEELCAMEGglfRKLAEKQQKASAEDAHLLKDVEAVE 760
                 48********************************7665550011555555567789999996666655.6889999999755.48888876554432225666666666666667777766665 PP

>> TIGR03269  met_CoM_red_A2: methyl coenzyme M reductase system, component A2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.6   0.1   5.4e-15   3.9e-13     302     515 ..     520     727 ..     500     732 .. 0.82

  Alignments for each domain:
  == domain 1    score: 46.6 bits;  conditional E-value: 5.4e-15
   TIGR03269 302 nvslevkekeifGlvGtsGaGkttlskilaGvleptsGevevrvGdewvdmtkkgvlerGrakkyiGllhqeyalyphrtvlenlteai....glelpdelakrkavivlkavGfdeekakeildklpdelseGerhrvalaqvlikeprivildeptGtmdpitkvkvaesilkareeleetfvivshdmdfvlevcdraalmrdGkivkiGdpeei 515
                 + +l++  + +  l G sG+Gk+t+  ++    +p +G +++  G++  d+  +        +  + l+ qe  l++  tv en++  +    + e  +e ak    + + +  + + + +++  +   +ls G++ rva+a+ +ik+p i++lde t ++d  ++++v+ ++ k re  ++t + ++h +  +++  d +a++  G iv+ G+ ee+
  MMETSP1137-20121227|2755_1 520 GYNLNIPAGAMCALCGPSGSGKSTIVGLMERFYDPQAGSLHLD-GHNLKDLNVRW------LRAQMSLVGQEPVLFS-GTVYENIAYGVlgnaTREQVEEAAKTGDAHNFITKVLADGYDTDVG-QGGGKLSGGQKQRVAIARAMIKKPEILLLDEATSALDNAAEKAVQTALDKIRETKKRTTITIAHRLTTIRN-SDIIAVVNRGVIVEQGNWEEL 727
                 6678888899999999999999999999999999999999875.77777776555......3445788889998887.4778887765522114456666777766777777777777777764.56789**************************************************************9998.79**************99987 PP

>> TIGR00954  3a01203: peroxysomal long chain fatty acyl transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.9   0.0   3.4e-14   2.4e-12     468     643 ..     517     704 ..     495     716 .. 0.73

  Alignments for each domain:
  == domain 1    score: 43.9 bits;  conditional E-value: 3.4e-14
   TIGR00954 468 lieeLsfevksGnhlLiiGPnGcGKsslfRilgelWPvyg...........glltkpeegklFyvPqrPYmslgtlRdqiiYPdssedfkerglsdkdLeqiLeevkLedllereggwdavqdWkdvLsgGekqRiamARlfyHkPkfavLDEctsAvsvdvEdklyelakev....gitllsvshrksLw 643
                 + +  +++++ G    ++GP G GKs +  ++  ++   +            l     + ++  v q P +  gt+ + i Y    +  +e  +++   +    +  ++++l  +   d v +    LsgG+kqR+a+AR +  kP+  +LDE+tsA+    E+++  ++ ++    + t ++++hr + +
  MMETSP1137-20121227|2755_1 517 ICNGYNLNIPAGAMCALCGPSGSGKSTIVGLMERFYDPQAgslhldghnlkDLNVRWLRAQMSLVGQEPVLFSGTVYENIAYGVLGNATRE-QVEE-AAKTGDAHNFITKVLADGYDTD-VGQGGGKLSGGQKQRVAIARAMIKKPEILLLDEATSALDNAAEKAVQTALDKIretkKRTTITIAHRLTTI 704
                 5677899***************************995555488888555533333335678999******************765443332.2222.2222222333556666655544.6677899*******************************999999887665544111146789999998766 PP

>> TIGR01194  cyc_pep_trnsptr: cyclic peptide transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.6   0.0   3.6e-13   2.6e-11     333     550 ..     496     721 ..     490     724 .. 0.78

  Alignments for each domain:
  == domain 1    score: 40.6 bits;  conditional E-value: 3.6e-13
   TIGR01194 333 svdslelkdvrysykdvessegfal.GpidlriasGelvyivGenGcGkstliklllGlyipqeGellldGeavsdesrddyrdlfsavfadyylfddlvqpdekkqasldqat.....tylsrleledk.vkvedlnyst.....ttdlstGqrkrlalvnayleerpvllldewaadqdpafkrvfyeellpdlkrrGktilvishddryfeladrlikladGkvvke 550
                   + +e+k+v ++y+++     f++    +l+i  G +  + G  G Gkst++ l+  +y pq G l ldG+ + d      r  +s v  +  lf   v   +     l +at     +  ++ + ++   kv   +y t       +ls Gq++r+a+  a +++  +lllde ++  d a  +   + l      + +t + i+h     + +d +  +  G +v++
  MMETSP1137-20121227|2755_1 496 VKGHIEVKEVVFAYPSA---PHFNIcNGYNLNIPAGAMCALCGPSGSGKSTIVGLMERFYDPQAGSLHLDGHNLKDLNVRWLRAQMSLVGQEPVLFSGTVYE-NIAYGVLGNATreqveEAAKTGDAHNFiTKVLADGYDTdvgqgGGKLSGGQKQRVAIARAMIKKPEILLLDEATSALDNAAEKAVQTALDKIRETKKRTTITIAHRLTTIRNSDIIAVVNRGVIVEQ 721
                 56788999999998854...456551468***********************************************999999**9**999999999988873.3333333333311000333333332221356666666522222468**************************************9999977777788899*****9999999999999999999875 PP

>> TIGR00956  3a01205: pleiotropic drug resistance family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.6   0.0   1.3e-11   9.2e-10      73     270 ..     514     700 ..     501     728 .. 0.74

  Alignments for each domain:
  == domain 1    score: 34.6 bits;  conditional E-value: 1.3e-11
   TIGR00956  73 kfdilkdvdglikpgelvvvLGrPgsGcstlLksiasktegfkkgkeskitYdglskeeik.khyrgdvvYsaetdvHlpsltvketLdfaarlktpqnRvkgvsreeyakkladvvlaiyGLshtkntkvGndlvRGvsGGerkRvsiaevlvakakiqcwDnatrGLDsatalefvkalktsaeilkatalvaiyqa 270
                 +f+i +  +  i +g +  + G+ gsG+st+     + +e+f   + ++++ dg++ ++++ + +r+++  ++++ v +   tv+e + + +     ++R ++v++ + +    +++ ++  L   ++t vG+     +sGG+++Rv+ia +++ k++i+++D+at  LD a    +  al ++ e  k t +++i   
  MMETSP1137-20121227|2755_1 514 HFNICNGYNLNIPAGAMCALCGPSGSGKSTI----VGLMERFYDPQAGSLHLDGHNLKDLNvRWLRAQMSLVGQEPVLFSG-TVYENIAYGVLG--NATR-EQVEEAAKTGDAHNFITKV--LADGYDTDVGQGGG-KLSGGQKQRVAIARAMIKKPEILLLDEATSALDNAAEKAVQTALDKIRETKKRT-TITIAHR 700
                 56677777777899***************85....577889999999*************725679999999999998865.999998877664..4455.3455555555555555555..78999*****9854.49*******************************997666666665554444433.4444333 PP

>> TIGR02323  CP_lyasePhnK: phosphonate C-P lyase system protein PhnK
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.4   0.1   1.8e-10   1.3e-08      24     220 ..     525     722 ..     500     729 .. 0.73

  Alignments for each domain:
  == domain 1    score: 32.4 bits;  conditional E-value: 1.8e-10
   TIGR02323  24 lypGevlgivGesGsGkstllkalaarlladaGevtyesrsrelellalseaerrlllrtewGlvhqnprGlrmevsaGanigerllavgarh....yGkiraaakwlekveidaari....kpaafsGGmqqrlqiarnlvtrprlvfm.eptGGl..vsvqarllllrglvrelglaviivth.lavarllaqrllvmkqGrvvesG 220
                 +  G + ++ G sGsGkst++  +     ++aG+++ +  +       l + + r  lr++  lv q+p  +  +v    ni+  +l   +r       k  +a +++ kv  d   +       ++sGG +qr+ iar+++ +p ++++ e t  l   + +a    l ++    + ++i ++h l+ +r  ++ + v+++G +ve+G
  MMETSP1137-20121227|2755_1 525 IPAGAMCALCGPSGSGKSTIVGLMERFYDPQAGSLHLDGHN-------LKDLNVR-WLRAQMSLVGQEPVLFSGTVY--ENIAYGVLGNATREqveeAAKTGDAHNFITKVLADGYDTdvgqGGGKLSGGQKQRVAIARAMIKKPEILLLdEATSALdnAAEKAVQTALDKIRETKKRTTITIAHrLTTIRN-SDIIAVVNRGVIVEQG 722
                 456888899**************************998766.......5555566.67999********86555554..34444444444443000044555556699999887655533545679*********************99999****963332333334555555556778889998999996.77999*********99 PP

>> TIGR01257  rim_protein: rim ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.9   0.0   1.9e-10   1.4e-08     947    1142 ..     519     722 ..     484     748 .. 0.74

  Alignments for each domain:
  == domain 1    score: 29.9 bits;  conditional E-value: 1.9e-10
   TIGR01257  947 drlnitfyenqitaflghngagktttlsiltgllpptsgtvlvggkdie.tnldavrqslgmcpqhnilfhhltvaehilfya..qlkgrsweeaqlemea.....mledtglhhkrneeaqdlsgglqrklsvaiafvgdakvvvldeptsgvdpysrrsiwdlllkyrsg..rtiimsthhmdeadllgdriaiisqgrlycsg 1142
                  +  n+ +    + a+ g  g+gk+t + ++  +  p +g++ + g++++  n+  +r  + ++ q  +lf   tv e i +    +   +  eea    +a      +   g      +    lsgg ++++++a a++    +++lde ts +d  + +++   l k r    rt i  +h +       d ia++++g +   g
  MMETSP1137-20121227|2755_1  519 NGYNLNIPAGAMCALCGPSGSGKSTIVGLMERFYDPQAGSLHLDGHNLKdLNVRWLRAQMSLVGQEPVLFSG-TVYENIAYGVlgNATREQVEEAAKTGDAhnfitKVLADGYDTDVGQGGGKLSGGQKQRVAIARAMIKKPEILLLDEATSALDNAAEKAVQTALDKIRETkkRTTITIAHRLTTI-RNSDIIAVVNRGVIVEQG 722 
                  45666667778999*******************************9985269999**************975.88898876431122233445555444441111122334777777888899*******************************************999974338899888887654.346777777777655444 PP

>> TIGR00630  uvra: excinuclease ABC subunit A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.0   0.0     0.001     0.073     626     650 ..     521     545 ..     502     555 .. 0.87
   2 !   18.1   0.1   1.8e-06   0.00013     821     900 ..     633     710 ..     608     724 .. 0.89

  Alignments for each domain:
  == domain 1    score: 9.0 bits;  conditional E-value: 0.001
   TIGR00630 626 idvsiplglltvitGvsgsGkstLi 650
                  +++ip g + ++ G+sgsGkst++
  MMETSP1137-20121227|2755_1 521 YNLNIPAGAMCALCGPSGSGKSTIV 545
                 6899*******************97 PP

  == domain 2    score: 18.1 bits;  conditional E-value: 1.8e-06
   TIGR00630 821 klGqpattLsGGeaqrvkLakeLskrstgktlyilDePttGLhfdDikkLlevlqrlvd.kGntvvviehnldviksaDyi 900
                  +Gq    LsGG  qrv +a+ + k+     + +lDe t  L  +  k + + l+++ + k  t + i h l  i+++D i
  MMETSP1137-20121227|2755_1 633 DVGQGGGKLSGGQKQRVAIARAMIKKP---EILLLDEATSALDNAAEKAVQTALDKIREtKKRTTITIAHRLTTIRNSDII 710
                 5899999**************999885...699***********999999999999987256799**************87 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (905 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       230  (0.0560702); expected 82.0 (0.02)
Passed bias filter:                      163  (0.0397367); expected 82.0 (0.02)
Passed Vit filter:                        74  (0.01804); expected 4.1 (0.001)
Passed Fwd filter:                        57  (0.0138957); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              57  [number of targets reported over threshold]
# CPU time: 1.52u 0.37s 00:00:01.89 Elapsed: 00:00:00.93
# Mc/sec: 1284.41
//
Query:       MMETSP1137-20121227|2756_1  [L=140]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (140 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        60  (0.014627); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.16s 00:00:00.32 Elapsed: 00:00:00.61
# Mc/sec: 302.93
//
Query:       MMETSP1137-20121227|2757_1  [L=293]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (293 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        64  (0.0156021); expected 82.0 (0.02)
Passed bias filter:                       39  (0.00950756); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.10s 00:00:00.32 Elapsed: 00:00:00.94
# Mc/sec: 411.41
//
Query:       MMETSP1137-20121227|2758_1  [L=259]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (259 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        29  (0.00706972); expected 82.0 (0.02)
Passed bias filter:                       27  (0.00658216); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.13s 00:00:00.33 Elapsed: 00:00:00.33
# Mc/sec: 1035.91
//
Query:       MMETSP1137-20121227|2759_1  [L=816]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (816 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       137  (0.0333983); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.50u 0.16s 00:00:00.66 Elapsed: 00:00:00.49
# Mc/sec: 2198.02
//
Query:       MMETSP1137-20121227|2760_1  [L=739]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      2e-82  275.5   0.0    3.1e-29   99.8   0.0    4.1  4  TIGR01931 cysJ: sulfite reductase [NADPH] flavoprotein, alpha-component
    1.6e-09   35.0   9.7    1.3e-06   25.4   0.1    4.5  4  TIGR03224 benzo_boxA: benzoyl-CoA oxygenase/reductase, BoxA protein
  ------ inclusion threshold ------
      0.036   11.4   0.0      0.093   10.1   0.0    1.6  1  TIGR01752 flav_long: flavodoxin


Domain annotation for each model (and alignments):
>> TIGR01931  cysJ: sulfite reductase [NADPH] flavoprotein, alpha-component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.3   0.0   1.6e-22   2.2e-19      91     200 ..       4     119 ..       1     128 [. 0.88
   2 !   99.8   0.0   2.3e-32   3.1e-29     227     425 ..     177     396 ..     156     405 .. 0.82
   3 !   29.4   0.0   4.7e-11   6.4e-08     412     477 ..     452     515 ..     424     520 .. 0.74
   4 !   73.4   0.0   2.3e-24   3.1e-21     478     588 ..     539     655 ..     531     661 .. 0.87

  Alignments for each domain:
  == domain 1    score: 67.3 bits;  conditional E-value: 1.6e-22
   TIGR01931  91 klvsakdykakelkkekllllvistqGeGepPeeaislhkflaskkaPk..lenlkysvlgLGDssYeffCqagkdfDkrleeLGgkrllerv....daDvdyeaaaaeWseevlk 200
                 ++  +++y++ +l +e+l++ v st GeGe P++  s+++fl  +  P+  l+++k++ +gLGDssY +f  a+k++ +rle+LG+ +ll+      + D+ ++    eW  ++  
  MMETSP1137-20121227|2760_1   4 RVHAMDEYDVSNLPHERLVVCVASTTGEGEVPDNMRSFWQFLLRRDLPRtaLSQVKHTTFGLGDSSYPKFNYAAKRLHRRLEQLGSTALLPIGlgddQDDLGLDRGFGEWVTQLWP 119
                 67789*******************************************86689************************************997533223568888888888877765 PP

  == domain 2    score: 99.8 bits;  conditional E-value: 2.3e-32
   TIGR01931 227 seyskknPfeaevlenqkitgrdskkdvrhieldledsglkyepGDaLGvwykndpalvkeilellsldadekvtvk...eevlslkeaLakkfeltklt........ka...llkkya.elakneeLkklva..dkeklkayian..tdlvdlvrdyp.akldaeelielLrpltprLYsiassqkevddevhltvgvvkkeaegra.rlGgasgflae 425
                 ++  +++P+ a vl n ++t++d  +dvrhie+dl +sgl+yepGDaL v ++nd+a v+ +l+ l ++++++++++   ++  +l++   +  el +          ++   ll ++a + +++e+L +l +    ++l++y ++  +   +++rd+  a    e +++lL pl  r +si+ss  e ++  h+tv+vv++++  +a r+G++s+fla+
  MMETSP1137-20121227|2760_1 177 QTPDRHRPWMARVLRNVRLTSEDCARDVRHIEFDLAGSGLQYEPGDALAVQPRNDEADVRGLLRVLGFEPSQRLRIRavaSHAPPLSRSDYTSLELFRDRldtfgvprRPffaLLAHFAtDQMQAEKLAELGSvaGAADLAEYATQprRTCAEVLRDFTsARPPLEYYLDLLPPLRERYFSISSSPLEHPTSAHITVAVVRYRTMLQApRKGVCSNFLAA 396
                 4456899*******************************************************************998776677778887777777754321111122244111444443156788899999655599******986437899******978888999***********************************98876549********97 PP

  == domain 3    score: 29.4 bits;  conditional E-value: 4.7e-11
   TIGR01931 412 grarlGgasgflaerlkeddtvkvyveenenfrlPedkdtpiimigpGtGvaPfraflqereeega 477
                  +a +  a    a  +++  t+ v++++    rlP+    p++m+gpGtGvaPfraf+++r     
  MMETSP1137-20121227|2760_1 452 ATATTADADAAAATAMRPLSTAAVWLRR-GCLRLPAA-SAPMLMVGPGTGVAPFRAFVRHRMCLLQ 515
                 4445555566666677777788888765.5789**85.68*******************9976555 PP

  == domain 4    score: 73.4 bits;  conditional E-value: 2.3e-24
   TIGR01931 478 eGknWlffGnphfaeDfLYqveWqkylkkgvltkldlafsrDqke...kiYvqdrlreqg..kelfeWl.qeGahiYvCGdakkmakDvekaLldviakegaldaeeaeeyleelrk 588
                  G + lffG ++  eDfLY  eW  ++  g lt+l  afs  ++e   k+Yvq+r+re +  +++++ l    ah+Y+ G a  m + v++aL++  +  g + ++ a+++l  l  
  MMETSP1137-20121227|2760_1 539 VGPSLLFFGCRKRDEDFLYESEWSAAVEAGALTALHTAFSXXREEkarKVYVQHRMREPAvaEQMWRQLcAPDAHVYIAGAAGAMPRAVRAALVEAAVAYGGMGEDGAAAWLRALER 655
                 68899***********************************755442228********9752277887762568***************************************99976 PP

>> TIGR03224  benzo_boxA: benzoyl-CoA oxygenase/reductase, BoxA protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.3   0.0   0.00015      0.21     138     187 ..     180     229 ..     138     242 .. 0.74
   2 ?    1.6   0.0     0.016        22     198     245 ..     353     398 ..     348     407 .. 0.80
   3 ?   -4.6   4.7       1.3   1.7e+03      99     153 ..     420     452 ..     372     480 .. 0.42
   4 !   25.4   0.1   9.6e-10   1.3e-06     268     390 ..     489     639 ..     478     655 .. 0.66

  Alignments for each domain:
  == domain 1    score: 8.3 bits;  conditional E-value: 0.00015
   TIGR03224 138 aakapitatvvgnyrltdedaesdihhivldfgslpfpvlegqsigilpp 187
                   ++p  a v  n+rlt ed   d+ hi +d+    +    g+++ + p 
  MMETSP1137-20121227|2760_1 180 DRHRPWMARVLRNVRLTSEDCARDVRHIEFDLAGSGLQYEPGDALAVQPR 229
                 4567899************************9888777777777776665 PP

  == domain 2    score: 1.6 bits;  conditional E-value: 0.016
   TIGR03224 198 lrqysvasprdgerprynnlaltvkrvtedhegnavrgvasnylcdlk 245
                  r +s++s    e p+   ++++v r  +  +  + +gv+sn+l  l+
  MMETSP1137-20121227|2760_1 353 ERYFSISSS-PLEHPTSAHITVAVVRYRTMLQ-APRKGVCSNFLAALR 398
                 566777653.5689999999999999887665.6899*******9886 PP

  == domain 3    score: -4.6 bits;  conditional E-value: 1.3
   TIGR03224  99 ddeaasegekvseveeveaaqkgstlapwsaakpyvnlyaakapitatvvgnyrl 153
                 + +aa+ ++++s+ ++ +a                      +++itat +     
  MMETSP1137-20121227|2760_1 420 KLNAAADTAAISTTTATTA----------------------TSTITATATATSTA 452
                 2222222222222221111......................11111111111111 PP

  == domain 4    score: 25.4 bits;  conditional E-value: 9.6e-10
   TIGR03224 268 ssilmictgtgsapmramterr.........rrrrakg...........eggklllffgartkeelpyf.gplqkl..pkdfidinfafs..rtpeepkryvqdairera..advaallkddntyiyvcglkg.meegvlealrevaeaag 390
                 + +lm+  gtg ap+ra+  +r          r+ +++             g  llffg r+++e   +            +  ++ afs  r+ +  k yvq  +re a  +++ + l  +++++y+ g  g m   v  al e a a g
  MMETSP1137-20121227|2760_1 489 APMLMVGPGTGVAPFRAFVRHRmcllqtgktERQNHSNgdstssadasvSVGPSLLFFGCRKRDEDFLYeSEWSAAveAGALTALHTAFSxxREEKARKVYVQHRMREPAvaEQMWRQLCAPDAHVYIAGAAGaMPRAVRAALVEAAVAYG 639
                 568999999999999997655422222221122222223444444444345889********98855441433332112345567777772255556788********752268999*************875488999999998877655 PP

>> TIGR01752  flav_long: flavodoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0   6.8e-05     0.093      32     113 ..       6      90 ..       3      96 .. 0.75

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 6.8e-05
   TIGR01752  32 vnikkasaeeleaydvlilgtptwgaGelqedWeeilskleeldl.....kgktvalfGlGdqegysetfvdalgiladklkarGak 113
                 + +++ ++++l +   ++++++t g Ge++++ + +++ l   dl     +  + + fGlGd+ +y+ +f  a + l+ +l++ G++
  MMETSP1137-20121227|2760_1   6 HAMDEYDVSNLPHERLVVCVASTTGEGEVPDNMRSFWQFLLRRDLprtalSQVKHTTFGLGDS-SYP-KFNYAAKRLHRRLEQLGST 90 
                 556677777888888899************988888876655554111115666689****97.576.5888889999999999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (739 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       171  (0.041687); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.54u 0.16s 00:00:00.70 Elapsed: 00:00:00.49
# Mc/sec: 1990.61
//
Query:       MMETSP1137-20121227|2761_1  [L=193]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (193 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        78  (0.0190151); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.14s 00:00:00.33 Elapsed: 00:00:00.42
# Mc/sec: 606.52
//
Query:       MMETSP1137-20121227|2762_1  [L=156]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.6e-07   28.6   0.0    3.5e-07   28.2   0.0    1.1  1  TIGR01068 thioredoxin: thioredoxin


Domain annotation for each model (and alignments):
>> TIGR01068  thioredoxin: thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.2   0.0   8.6e-11   3.5e-07       3      90 ..      14     103 ..      12     108 .. 0.86

  Alignments for each domain:
  == domain 1    score: 28.2 bits;  conditional E-value: 8.6e-11
   TIGR01068   3 eenfeetvassdklvl..vDfwAeWCgpCkmlaPvleelakel.eekvkvvKlnvdeeqeiaakygirsiPtlllfkngkevkrvvGakpk 90 
                 +++f++ v ++ k+ l  vD + e  gpC +l+  l+ +++el   +vk+++ + ++ + +++++g rs+P  llfk g+e+ r+ G +p 
  MMETSP1137-20121227|2762_1  14 DATFRSLVLDAPKTCLcxVDCYSEIWGPCEALSKKLQSISTELiDYDVKFIRAQAESIELLSEQAG-RSMPLFLLFKGGEEAGRIKGXEPA 103
                 5677777877777655449*********************9972569********99999999888.9******************99886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (156 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        60  (0.014627); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.16u 0.13s 00:00:00.29 Elapsed: 00:00:00.31
# Mc/sec: 664.20
//
Query:       MMETSP1137-20121227|2763_1  [L=324]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (324 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       251  (0.0611897); expected 82.0 (0.02)
Passed bias filter:                      117  (0.0285227); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.19s 00:00:00.46 Elapsed: 00:00:00.70
# Mc/sec: 610.92
//
Query:       MMETSP1137-20121227|2765_1  [L=446]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (446 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       482  (0.117504); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.54u 0.16s 00:00:00.70 Elapsed: 00:00:00.64
# Mc/sec: 919.80
//
Query:       MMETSP1137-20121227|2766_1  [L=369]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.8e-72  238.5   0.2    1.7e-71  237.7   0.1    1.4  1  TIGR02428 pcaJ_scoB_fam: 3-oxoacid CoA-transferase, B subunit
    2.1e-28   97.0   0.1    4.1e-28   96.1   0.0    1.4  1  TIGR02429 pcaI_scoA_fam: 3-oxoacid CoA-transferase, A subunit


Domain annotation for each model (and alignments):
>> TIGR02428  pcaJ_scoB_fam: 3-oxoacid CoA-transferase, B subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  237.7   0.1   8.1e-75   1.7e-71       3     206 ..     119     321 ..     117     322 .. 0.94

  Alignments for each domain:
  == domain 1    score: 237.7 bits;  conditional E-value: 8.1e-75
   TIGR02428   3 reeiaaRvakelkdgelvnLGiGlP.tlvanylpeglevilqsenGilglGpapeegeedadlinagkktvtllpgasifdsadsfaliRgghvdvavlGalqvseegdlanWaipgklvkgvGGamDLvagakrvivvmehldkkGeskilkeCtlPltgkkvvdrivtelavleveeeglvlkelapgvtveelkekteaelk 206
                 re+i +R+a el++g++vnLGi     ++  + ++g + +      +lg+Gp+p++g++d dlinagk+tvt l+gas+f   +sfa+iRggh +v+vlG++qv+++gd+an+ ipgklvkg+GGamDLv+  +rviv+meh+dk+G+sk+l +CtlPltg++vv++++te+av++v +e+lvl+e+ +g tve+++++t a+++
  MMETSP1137-20121227|2766_1 119 RERIVRRAALELRSGDYVNLGIXDAdPRLELHTSDGEDHT--PVRXMLGVGPFPKRGKQDCDLINAGKQTVTELAGASYFGADQSFAMIRGGHCQVTVLGSMQVAANGDMANYLIPGKLVKGMGGAMDLVSSGSRVIVTMEHTDKEGNSKVLPRCTLPLTGRGVVSTLITEKAVFDVVDETLVLREIGEGETVESVRAATAADFV 321
                 789*******************754145566677776643..4568************************************************************************************************************************************************************997 PP

>> TIGR02429  pcaI_scoA_fam: 3-oxoacid CoA-transferase, A subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.1   0.0     2e-31   4.1e-28     142     220 ..      12      90 ..       7      92 .. 0.96

  Alignments for each domain:
  == domain 1    score: 96.1 bits;  conditional E-value: 2e-31
   TIGR02429 142 keyvleeplkadfalikaekadryGnltyrkaarnfgpimamaakttiaqvsqvvelGeldpedvitpGifvdrvveve 220
                  eyvlee+l +d+a++ka k+d+ Gnl+yrk+arn +p +a a ++tia+v+++v+ Ge++p+ v+tpG++v+rvv+ e
  MMETSP1137-20121227|2766_1  12 SEYVLEEALGGDYAFVKAWKGDTEGNLVYRKTARNHNPAIATAGRVTIAEVEELVSAGEIEPDAVHTPGVYVQRVVQAE 90 
                 58**************************************************************************875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (369 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       111  (0.02706); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.27u 0.15s 00:00:00.42 Elapsed: 00:00:00.49
# Mc/sec: 993.96
//
Query:       MMETSP1137-20121227|2767_1  [L=190]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (190 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        70  (0.0170648); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.17s 00:00:00.35 Elapsed: 00:00:00.37
# Mc/sec: 677.78
//
Query:       MMETSP1137-20121227|2768_1  [L=131]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (131 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.13s 00:00:00.28 Elapsed: 00:00:00.28
# Mc/sec: 617.52
//
Query:       MMETSP1137-20121227|2770_1  [L=282]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (282 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       123  (0.0299854); expected 82.0 (0.02)
Passed bias filter:                      100  (0.0243784); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.13s 00:00:00.38 Elapsed: 00:00:00.42
# Mc/sec: 886.21
//
Query:       MMETSP1137-20121227|2771_1  [L=253]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (253 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        66  (0.0160897); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.14s 00:00:00.34 Elapsed: 00:00:00.39
# Mc/sec: 856.24
//
Query:       MMETSP1137-20121227|2772_1  [L=98]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (98 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       132  (0.0321794); expected 82.0 (0.02)
Passed bias filter:                      124  (0.0302292); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.11s 00:00:00.25 Elapsed: 00:00:00.33
# Mc/sec: 391.97
//
Query:       MMETSP1137-20121227|2773_1  [L=225]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (225 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        88  (0.0214529); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.15s 00:00:00.34 Elapsed: 00:00:00.36
# Mc/sec: 824.93
//
Query:       MMETSP1137-20121227|2774_1  [L=65]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (65 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       113  (0.0275475); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.18s 00:00:00.30 Elapsed: 00:00:00.40
# Mc/sec: 214.48
//
Query:       MMETSP1137-20121227|2775_1  [L=300]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.022   12.2   0.0      0.035   11.6   0.0    1.2  1  TIGR01262 maiA: maleylacetoacetate isomerase


Domain annotation for each model (and alignments):
>> TIGR01262  maiA: maleylacetoacetate isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   8.5e-06     0.035     114     171 ..     187     244 ..     183     250 .. 0.92

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 8.5e-06
   TIGR01262 114 qlleeklgvdeeekkewlkhwiekGlaalEellkekagafcvGdevtladvcLvpqvy 171
                 ++l++ l+ d+++  + +k+ +++ +a l +ll++    f +G++++ladv L+   +
  MMETSP1137-20121227|2775_1 187 RRLTKMLKLDDAKVVQQIKDSLHADFAQLGTLLEALPTPFIAGQKPGLADVALATMAA 244
                 678999999********************************************87765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (300 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        54  (0.0131643); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.22u 0.16s 00:00:00.38 Elapsed: 00:00:00.44
# Mc/sec: 899.93
//
Query:       MMETSP1137-20121227|2777_1  [L=140]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (140 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       557  (0.135787); expected 82.0 (0.02)
Passed bias filter:                      117  (0.0285227); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.17s 00:00:00.38 Elapsed: 00:00:00.34
# Mc/sec: 543.48
//
Query:       MMETSP1137-20121227|2778_1  [L=333]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.027   11.7   0.3        1.6    5.8   0.0    2.2  2  TIGR02050 gshA_cyan_rel: carboxylate-amine ligase, YbdK family


Domain annotation for each model (and alignments):
>> TIGR02050  gshA_cyan_rel: carboxylate-amine ligase, YbdK family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   0.0   0.00039       1.6     120     133 ..      74      87 ..      41      92 .. 0.89
   2 ?    3.7   0.1    0.0018       7.3     119     131 ..     214     226 ..     210     234 .. 0.80

  Alignments for each domain:
  == domain 1    score: 5.8 bits;  conditional E-value: 0.00039
   TIGR02050 120 vlGlHvHvgvesed 133
                  +G+HvHvgv+ e+
  MMETSP1137-20121227|2778_1  74 ACGVHVHVGVSCEE 87 
                 59*******98665 PP

  == domain 2    score: 3.7 bits;  conditional E-value: 0.0018
   TIGR02050 119 lvlGlHvHvgves 131
                 + +G+HvHvg+  
  MMETSP1137-20121227|2778_1 214 VSCGMHVHVGMTC 226
                 569******9865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (333 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       123  (0.0299854); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.25u 0.17s 00:00:00.42 Elapsed: 00:00:00.34
# Mc/sec: 1292.72
//
Query:       MMETSP1137-20121227|2779_1  [L=853]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (853 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       191  (0.0465627); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.53u 0.18s 00:00:00.71 Elapsed: 00:00:00.87
# Mc/sec: 1294.10
//
Query:       MMETSP1137-20121227|2780_1  [L=260]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (260 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       227  (0.0553389); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.12s 00:00:00.34 Elapsed: 00:00:00.43
# Mc/sec: 798.07
//
Query:       MMETSP1137-20121227|2781_1  [L=459]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (459 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        69  (0.0168211); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.15s 00:00:00.48 Elapsed: 00:00:00.32
# Mc/sec: 1893.22
//
Query:       MMETSP1137-20121227|2782_1  [L=44]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (44 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        43  (0.0104827); expected 82.0 (0.02)
Passed bias filter:                       39  (0.00950756); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:00.24
# Mc/sec: 241.98
//
Query:       MMETSP1137-20121227|2783_1  [L=296]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (296 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       215  (0.0524135); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.11s 00:00:00.34 Elapsed: 00:00:00.69
# Mc/sec: 566.21
//
Query:       MMETSP1137-20121227|2784_1  [L=394]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (394 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.10s 00:00:00.39 Elapsed: 00:00:00.62
# Mc/sec: 838.77
//
Query:       MMETSP1137-20121227|2785_1  [L=275]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.028   11.2   0.0       0.04   10.7   0.0    1.1  1  TIGR01759 MalateDH-SF1: malate dehydrogenase


Domain annotation for each model (and alignments):
>> TIGR01759  MalateDH-SF1: malate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   9.8e-06      0.04     156     211 ..     114     168 ..      96     177 .. 0.86

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 9.8e-06
   TIGR01759 156 rLDhnRalsqlaeklgvkvskvknvviwGnHsntqvpdvtqatvkkeekgkpvkel 211
                 +LDh R  s+la+ ++ ++s    v+++  H++t++  +tqa v ++ +   v++ 
  MMETSP1137-20121227|2785_1 114 MLDHVRRASRLAHDAENQSS-APAVIMYERHTHTMLDVFTQALVASNPEAAGVVDQ 168
                 8**************98866.5789********************98888777775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (275 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        70  (0.0170648); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.23u 0.18s 00:00:00.41 Elapsed: 00:00:01.03
# Mc/sec: 352.40
//
Query:       MMETSP1137-20121227|2786_1  [L=266]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (266 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       131  (0.0319356); expected 82.0 (0.02)
Passed bias filter:                      109  (0.0265724); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.16s 00:00:00.39 Elapsed: 00:00:00.39
# Mc/sec: 900.23
//
Query:       MMETSP1137-20121227|2787_1  [L=453]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.2e-06   22.0  80.9     0.0012   14.4  26.7    2.1  2  TIGR02168 SMC_prok_B: chromosome segregation protein SMC
    5.9e-05   18.8  68.3     0.0033   13.0  34.6    2.2  2  TIGR02169 SMC_prok_A: chromosome segregation protein SMC


Domain annotation for each model (and alignments):
>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4  26.7     6e-07    0.0012     665     889 ..      30     256 ..       3     262 .. 0.62
   2 !   14.3  35.4   6.3e-07    0.0013     278     914 ..     208     448 ..     195     453 .] 0.45

  Alignments for each domain:
  == domain 1    score: 14.4 bits;  conditional E-value: 6e-07
   TIGR02168 665 ggsek.tessilerkkeieelee.eieeleekiaelekelkelekeleeleeeleklrkel..eelerklselkkelerlekeveqleerlaqlekeleeleeereeleeeleeaeeelkeaeeeieeleaeieqlkeelkalrealseleaeltelkeeaaekeerleslekeiaalekeleeleeqieeleeeiesleaeieeleeeleeleeeleellkekaslee 889
                 ++++  t + i +++++ie + +  ++ le+++ + ++e+k l  +l+++e++++++++++  e ++ +l++l ++l+++++++ ++e+r++ql++e+ +l+++ + ++++l+ a+ +  +a++++ + e+ +++ +++++  +++l++l +el++ ++e++ ++++l s ++ ++a e+e e +++ +++++ e++++ +++++ +++l+e+e++l++   +++++e+
  MMETSP1137-20121227|2787_1  30 RSRSTaTLAPIASTQAAIESVHSgLVQSLESDCLNYRAEIKGLTAALRAAEKNAATKQAAElvEAARLELQALASSLANEQQRASAAEARVRQLQAEQRQLQKQVADATAALDIARGT--AAQATKLADEQVAQNGRAAIQGMQADLDRLADELSKSQAEFSVVRKQLISARDVVEAREREREAAQALADSRASELQAALKQLADRQRQLDEAETKLAATGTRQRQAEA 256
                 4444434445555666666654414566777777777777777777776666554444433115556677777777777777777777777777777777777777777777777643..3344445556666677777777777777777777777777777777777777777777777777777777777777777777777777777777777776666554443 PP

  == domain 2    score: 14.3 bits;  conditional E-value: 6.3e-07
   TIGR02168 278 eleeeleelqkelqelkaeisrleqeieilkerleqlekeleeleeqleeleskkeeleeelaeleeeleelkeelesleaeleeaeaeleelesrleeleeeleelrsevaeleeqlaslnaelerleaeleqleerrerlkqeieelekkleeaeaelkelqeeleeleeeleeleeelerleealeeleeeleeaeqalqkaeeelaqlqarlesleslqenleglsegvkallknksklagilgvlselieveekyeaAieaalgerlqavvveneeaakkaiealkknelGrvtflpldvikgaeieaseaevlkseegvlgvakdlvkvdeklekalealLggvlvvddldsAlelakklraeerivtldGelvrrggvitggsektessilerkkeieeleeeieeleekiaelekelkelekeleeleeeleklrkeleelerklselkkelerlekeveqleerlaqlekeleeleeereeleeeleeaeeelkeaeeeieeleaeieqlkeelkalrealseleaeltelkeeaaekeerleslekeiaalekeleeleeqieeleeeiesleaeieeleeeleeleeeleellkekasleealaelreeleelseelrelekkvke 914
                 e+e++                                                                                                                                                                                                                                                                                                                                                                                                    ++ + +r +e++ + +++++ +++++e+e++l+++ ++++++e   +++ +++ e+ ++l++ +++l+rl+++  q++++++ +eke++ l ++ ++ ++  +++ +e ++ + e+ ++ + ++ l+ +l+a+++a ++l++++ ++ ++  +    +e++e+++ +le ++ el+++ ++l++e e+leae++++++++ +   e+ + + ++ +l+   ++  +++ ++++e+++l+ ++++
  MMETSP1137-20121227|2787_1 208 EREAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------QALADSRASELQAALKQLADRQRQLDEAETKLAATGTRQRQAE---ADALAKAAETAERLKKSEEQLSRLKSQLSQVKAEVDAKEKERQALLQRVAAGDK-AKKNASEVAALKGELSKQAELVKGLRMQLEASKQAERALQDAAAREAQRHLK---VVERHERRVWSLEGQVAELTNSNQRLSKEKEQLEAEVNDMSNQKLQTFPEAPQSSSNR-QLAVLNNSNFAKMMNMQQEINQLKAHIEA 448
                 22222....................................................................................................................................................................................................................................................................................................................................................................................................2222233344455555555555555555555555555444444...444444444445666666666666666666666666666666665554444333.4444456666666666666666666666666666666666655533333332...3445555555566666666665556655555566666555554222222222222222.12222222223333444444444444433 PP

>> TIGR02169  SMC_prok_A: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.6   8.4   4.1e-06    0.0084     416     530 ..      55     173 ..      10     174 .. 0.80
   2 !   13.0  34.6   1.6e-06    0.0033     191     442 ..     164     418 ..     155     453 .] 0.44

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 4.1e-06
   TIGR02169 416 lkrleeelaelkaelerieekiaeleee..leelaeeikkaeqkleqlkedlekaekelrklkeeleklekelselerelaeleaqakaseees..reskaveevlkasieGvlGtvaq 530
                  + le++  + +ae++++ +++ + e++  ++++ae +++a+ +l+ l+  l++++++ ++ ++ +++l+ e+++l++++a + a  ++++ +     + a e+v ++++  + G+ a+
  MMETSP1137-20121227|2787_1  55 VQSLESDCLNYRAEIKGLTAALRAAEKNaaTKQAAELVEAARLELQALASSLANEQQRASAAEARVRQLQAEQRQLQKQVADATAALDIARGTAaqATKLADEQVAQNGRAAIQGMQAD 173
                 5778999999********99987776651156667789************************************************999986540044556677777777777776665 PP

  == domain 2    score: 13.0 bits;  conditional E-value: 1.6e-06
   TIGR02169 191 elvieevrqqlerLekerek.aerYkeLkkekreleltlllkelealekq..kekiekelaeleeelekleeeieelekeleeiekkleelnkkieklgeeeqlavk...ekleelkaeiekleraiaekeeeledaeerlakaeaeidklkeeieelereieeekkereklkeelkelkeeleelraeleevdkeaaelreelkelkekleklkeelnelkreldrlleelkrleeelaelkae.lerieekiaelee 442
                 ++ i+ ++  l+rL++e  k + ++  ++k++  ++  + ++e e   +q       +el+++ ++l++ +++++e e +l++   + +++++   +++ e + ++k   e+l  lk++++++++++++ke+e + + +r+a  + + +k ++e+++l++e+ +++   + l  +l+++k+ +++l+  ++ +++++ +++e+++ +   le    el +++   +rl  e+++le+e++++ ++ l+   e+ +   +
  MMETSP1137-20121227|2787_1 164 RAAIQGMQADLDRLADELSKsQAEFSVVRKQLISARDVVEAREREREAAQalADSRASELQAALKQLADRQRQLDEAETKLAATGTRQRQAEADALAKAAETAERLKkseEQLSRLKSQLSQVKAEVDAKEKERQALLQRVAAGD-KAKKNASEVAALKGELSKQAELVKGLRMQLEASKQAERALQDAAAREAQRHLKVVERHERRVWSLEGQVAELTNSN---QRLSKEKEQLEAEVNDMSNQkLQTFPEAPQSSSN 418
                 3445555555555555544313455555555555555555544443333311233444555555555555555555555555555555544444444333333333311135555555555555555555555555544444333.3445555555555555555555555555555555555555555555555555555555555555555555444444...5555555555555555543313332222222111 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (453 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       691  (0.168454); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                        24  (0.0058508); expected 4.1 (0.001)
Passed Fwd filter:                        10  (0.00243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.98u 0.21s 00:00:01.19 Elapsed: 00:00:01.18
# Mc/sec: 506.70
//
Query:       MMETSP1137-20121227|2788_1  [L=278]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.7e-26   91.0   0.0    2.2e-26   90.6   0.0    1.1  1  TIGR02037 degP_htrA_DO: peptidase Do
    7.4e-20   69.2   0.0    8.9e-20   68.9   0.0    1.1  1  TIGR02038 protease_degS: periplasmic serine peptidase DegS


Domain annotation for each model (and alignments):
>> TIGR02037  degP_htrA_DO: peptidase Do
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.6   0.0   1.1e-29   2.2e-26      56     153 ..     134     236 ..      81     251 .. 0.86

  Alignments for each domain:
  == domain 1    score: 90.6 bits;  conditional E-value: 1.1e-29
   TIGR02037  56 ekveslGSGviisadgyvlTNnHvvdga....keikvkls.dgrefkaklvgkDektDiAvlkieakkklpvvklgdsdklrvGdlvlAiGnPfglgetVtaG 153
                 e   + GSG++ + +g v+TN+Hv++      +++kvkl+   + ++a++vg  + +D+Avlki++ +  p++++g s++l+vG++vlAiGnPfgl+ t t+G
  MMETSP1137-20121227|2788_1 134 EVPAGAGSGFLWDDQGHVVTNYHVIASNgpvpNKVKVKLQgVTTAYDAQVVGMEPDKDLAVLKISSGALPPAIEVGTSNDLQVGQTVLAIGNPFGLDYTLTQG 236
                 556789*******99**********9863444799****945778********************999889*******************************9 PP

>> TIGR02038  protease_degS: periplasmic serine peptidase DegS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.9   0.0   4.3e-23   8.9e-20      47     171 ..     104     237 ..      77     260 .. 0.82

  Alignments for each domain:
  == domain 1    score: 68.9 bits;  conditional E-value: 4.3e-23
   TIGR02038  47 fnkavrraaPavvnvynrslsen..slnklsi.qglGsGvimskeGyiltnkhvikka....dqivvalqdG.rvfeaelvGsdsltdlavlkieadnl.ptiPlnadrkpkvGdvvlaiGnPynlGqtitqGi 171
                    + +r +P+v  +    +  +  sl+ +++  g GsG + +++G+++tn+hvi++     +++ v lq    +++a++vG+++  dlavlki +  l p+i + +++  +vG  vlaiGnP+ l  t+tqG 
  MMETSP1137-20121227|2788_1 104 LVSTFQRVSPSVAYIQTSAVAPTpfSLRPMEVpAGAGSGFLWDDQGHVVTNYHVIASNgpvpNKVKVKLQGVtTAYDAQVVGMEPDKDLAVLKISSGALpPAIEVGTSNDLQVGQTVLAIGNPFGLDYTLTQGA 237
                 555667888888888888887774566777774589*******************98633337899****8525789*******************998358******************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (278 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        47  (0.0114578); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.24u 0.15s 00:00:00.39 Elapsed: 00:00:00.28
# Mc/sec: 1265.27
//
Query:       MMETSP1137-20121227|2790_1  [L=281]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (281 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       369  (0.0899561); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.16s 00:00:00.44 Elapsed: 00:00:00.40
# Mc/sec: 927.22
//
Query:       MMETSP1137-20121227|2791_1  [L=212]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.4e-50  169.3   0.0    3.1e-50  169.0   0.0    1.0  1  TIGR02350 prok_dnaK: chaperone protein DnaK
    2.3e-25   86.9   0.0    2.9e-25   86.6   0.0    1.0  1  TIGR01991 HscA: Fe-S protein assembly chaperone HscA


Domain annotation for each model (and alignments):
>> TIGR02350  prok_dnaK: chaperone protein DnaK
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  169.0   0.0   1.5e-53   3.1e-50       2     130 ..      52     183 ..      51     187 .. 0.97

  Alignments for each domain:
  == domain 1    score: 169.0 bits;  conditional E-value: 1.5e-53
   TIGR02350   2 iiGidLGttnsvvavleggepvvianaeGarttPsvvafkkdgerlvGelakrqavtnpentivsikrliGrkle..eveeeakkvpykvveaen.evkvevedkeytpeeisaeiLqklkkdaeaylGekv 130
                 +iGidLGttns+va++egg+p+vi+naeG+rttPsv+af++dg+rlvG +akrqavtnp  t+++ krliGr+++  +v+++ k+vpy++v+a+n +++++ve+k+y+p + +a+iL k+k++ae +lG  +
  MMETSP1137-20121227|2791_1  52 VIGIDLGTTNSCVALMEGGSPRVIENAEGSRTTPSVIAFTSDGQRLVGAAAKRQAVTNPSGTLFATKRLIGRRFDdpHVQKDLKTVPYQIVRADNgDAWISVEGKTYSPSQAGAFILGKMKETAESHLGAAL 183
                 8*************************************************************************97789****************9*********************************876 PP

>> TIGR01991  HscA: Fe-S protein assembly chaperone HscA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.6   0.0   1.4e-28   2.9e-25       1     130 [.      52     183 ..      52     187 .. 0.95

  Alignments for each domain:
  == domain 1    score: 86.6 bits;  conditional E-value: 1.4e-28
   TIGR01991   1 avGiDlGttnslvaavregkaevlkdeegrvllpsvvryleegkvevGkeakeaaaedpkntiisvkRlmGrsled..vkkeaeelpyeledakgemvrlktaqgevtPvevsaeiLkklkkraeealgkel 130
                 ++GiDlGttns va ++ g+++v++++eg+ + psv+ ++++g+  vG++ak++a+++p+ t+ + kRl+Gr  +d  v+k  ++ py+++ a+++   ++++ ++ +P +  a iL k+k+ ae++lg +l
  MMETSP1137-20121227|2791_1  52 VIGIDLGTTNSCVALMEGGSPRVIENAEGSRTTPSVIAFTSDGQRLVGAAAKRQAVTNPSGTLFATKRLIGRRFDDphVQKDLKTVPYQIVRADNGDAWISVEGKTYSPSQAGAFILGKMKETAESHLGAAL 183
                 59**********************************************************************9998446788899*****************************************999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (212 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       121  (0.0294978); expected 82.0 (0.02)
Passed bias filter:                      102  (0.0248659); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.22u 0.16s 00:00:00.38 Elapsed: 00:00:00.65
# Mc/sec: 430.49
//
Query:       MMETSP1137-20121227|2792_1  [L=72]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        7.1    4.4   9.2        7.9    4.3   6.4    1.1  1  TIGR02205 septum_zipA: cell division protein ZipA


Domain annotation for each model (and alignments):
>> TIGR02205  septum_zipA: cell division protein ZipA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   6.4    0.0019       7.9     103     146 ..       9      57 ..       1      71 [. 0.47

  Alignments for each domain:
  == domain 1    score: 4.3 bits;  conditional E-value: 0.0019
   TIGR02205 103 aqpvqqqldlpqaekvaqqtvepreaks..lavasaeeeevekal...e 146
                 aqp  q++++pq  ++++q+  +  a+   +++a+   ++v++++   +
  MMETSP1137-20121227|2792_1   9 AQPYAQPYAQPQMAQPMAQPTAQPIAQPtaQPMAESMAQPVAEPAsdxP 57 
                 4555666666665555555444443332234444444455554333331 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        50  (0.0121892); expected 82.0 (0.02)
Passed bias filter:                       39  (0.00950756); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.13u 0.14s 00:00:00.27 Elapsed: 00:00:00.32
# Mc/sec: 296.98
//
Query:       MMETSP1137-20121227|2793_1  [L=133]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.6e-12   44.0   0.1    4.2e-12   43.8   0.1    1.1  1  TIGR00782 ccoP: cytochrome c oxidase, cbb3-type, subunit III
    1.2e-08   32.7   0.2    1.4e-06   25.9   0.0    2.1  2  TIGR03045 PS_II_C550: cytochrome c-550
    2.6e-06   25.0   0.1      2e-05   22.1   0.1    2.1  1  TIGR03046 PS_II_psbV2: photosystem II cytochrome PsbV2
  ------ inclusion threshold ------
      0.023   12.5   1.1       0.15    9.9   0.3    2.1  2  TIGR02603 CxxCH_TIGR02603: putative heme-binding domain


Domain annotation for each model (and alignments):
>> TIGR00782  ccoP: cytochrome c oxidase, cbb3-type, subunit III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.8   0.1   4.1e-15   4.2e-12     180     280 ..      29     127 ..      11     131 .. 0.76

  Alignments for each domain:
  == domain 1    score: 43.8 bits;  conditional E-value: 4.1e-15
   TIGR00782 180 adikdvasyvlslsskkpkdealaakGkelFadnCvsChgedgkGlqelgapnl.tddvwly...GgdkktivttikkGrigvmPawkkrlseaqikalaayvhs 280
                 + + ++a  vl+ +   p+ +a +a+G+++F++nC++Ch+   + +   +   l  d++  y   G++ k++v ++++G+   mPa++ rls+++i+ +a+yv +
  MMETSP1137-20121227|2793_1  29 KAVPAIAAGVLAAG---PAFAADMAAGEQVFSGNCAACHAGGMNVIMPEK--TLqQDALEEYlegGANVKAVVYQVTNGKN-AMPAFGGRLSDEDIENVATYVIT 127
                 45556666666555...777888999*************97666554443..33145555555546679**********96.6*******************987 PP

>> TIGR03045  PS_II_C550: cytochrome c-550
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.9   0.0   1.4e-09   1.4e-06      49     101 ..      47      99 ..       4     105 .. 0.89
   2 !    5.3   0.0     0.003         3     132     149 ..     113     130 ..     104     132 .. 0.91

  Alignments for each domain:
  == domain 1    score: 25.9 bits;  conditional E-value: 1.4e-09
   TIGR03045  49 eqvkkgkrlfnsaCatChvgGitktnpnvgLdleaLelatPaRdnvealvdyl 101
                 +++++g+++f  +Ca+Ch+gG+    p+ +L+ +aLe       nv+a+v  +
  MMETSP1137-20121227|2793_1  47 ADMAAGEQVFSGNCAACHAGGMNVIMPEKTLQQDALEEYLEGGANVKAVVYQV 99 
                 57899********************************9999999999998655 PP

  == domain 2    score: 5.3 bits;  conditional E-value: 0.003
   TIGR03045 132 LtdedLkliagyiLvqpk 149
                 L+ded++++a+y+++ +k
  MMETSP1137-20121227|2793_1 113 LSDEDIENVATYVITTAK 130
                 99************9987 PP

>> TIGR03046  PS_II_psbV2: photosystem II cytochrome PsbV2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.1   0.1     2e-08     2e-05      54      91 ..      46      83 ..      11     133 .] 0.83

  Alignments for each domain:
  == domain 1    score: 22.1 bits;  conditional E-value: 2e-08
   TIGR03046 54 aedlteGkklfesncknchvGGatlpnPkvslslkdlk 91
                a d+++G + f  nc  ch GG ++  P+ +l  + l+
  MMETSP1137-20121227|2793_1 46 AADMAAGEQVFSGNCAACHAGGMNVIMPEKTLQQDALE 83
                5799************************9988766665 PP

>> TIGR02603  CxxCH_TIGR02603: putative heme-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.3   0.00015      0.15       1      19 [.      47      65 ..      47      70 .. 0.92
   2 ?    0.3   0.0      0.13   1.4e+02     114     131 ..     108     125 ..      88     128 .. 0.75

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 0.00015
   TIGR02603  1 gdaekGkavfakaCvvCHr 19
                +d++ G++vf  +C++CH 
  MMETSP1137-20121227|2793_1 47 ADMAAGEQVFSGNCAACHA 65
                699***************5 PP

  == domain 2    score: 0.3 bits;  conditional E-value: 0.13
   TIGR02603 114 gleaglsdedladLvayL 131
                 +   +lsded+ ++  y+
  MMETSP1137-20121227|2793_1 108 AFGGRLSDEDIENVATYV 125
                 455689999999999887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (133 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       137  (0.0333983); expected 82.0 (0.02)
Passed bias filter:                      108  (0.0263286); expected 82.0 (0.02)
Passed Vit filter:                        21  (0.00511945); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.19u 0.15s 00:00:00.34 Elapsed: 00:00:00.28
# Mc/sec: 605.33
//
Query:       MMETSP1137-20121227|2794_1  [L=56]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        41  (0.00999512); expected 82.0 (0.02)
Passed bias filter:                       39  (0.00950756); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.13s 00:00:00.24 Elapsed: 00:00:00.24
# Mc/sec: 307.97
//
Query:       MMETSP1137-20121227|2795_1  [L=35]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (35 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        23  (0.00560702); expected 82.0 (0.02)
Passed bias filter:                       21  (0.00511945); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.13s 00:00:00.23 Elapsed: 00:00:00.23
# Mc/sec: 200.85
//
Query:       MMETSP1137-20121227|2796_1  [L=319]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (319 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        75  (0.0182838); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.13s 00:00:00.36 Elapsed: 00:00:00.47
# Mc/sec: 895.84
//
Query:       MMETSP1137-20121227|2797_1  [L=165]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00038   18.4   2.8    0.00064   17.6   1.9    1.4  1  TIGR04117 Syntroph_Cxxx: Cys-Xaa-Xaa-Xaa repeat radical SAM target protein


Domain annotation for each model (and alignments):
>> TIGR04117  Syntroph_Cxxx: Cys-Xaa-Xaa-Xaa repeat radical SAM target protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   1.9   1.6e-07   0.00064      38      92 ..      31      87 ..      15      92 .. 0.76

  Alignments for each domain:
  == domain 1    score: 17.6 bits;  conditional E-value: 1.6e-07
   TIGR04117 38 tlGilGlslaklsprav.aadca.sicsggcseacsgctdGcsgscsgtcertcadi 92
                 lG+  lsl    p a+ aad +   c   c + c+    G  + c+ +c+  cad 
  MMETSP1137-20121227|2797_1 31 LLGVSALSLLVEMPVAAfAADADlASCRKDCFKECNALAPGNQAYCAQQCDDYCADA 87
                689999999877665541555442358889999999989999999999999888885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (165 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        97  (0.023647); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.16u 0.17s 00:00:00.33 Elapsed: 00:00:00.41
# Mc/sec: 531.18
//
Query:       MMETSP1137-20121227|2798_1  [L=541]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (541 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        45  (0.0109703); expected 82.0 (0.02)
Passed bias filter:                       42  (0.0102389); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.14s 00:00:00.48 Elapsed: 00:00:00.41
# Mc/sec: 1741.61
//
Query:       MMETSP1137-20121227|2800_1  [L=514]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (514 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        77  (0.0187713); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.16s 00:00:00.51 Elapsed: 00:00:00.41
# Mc/sec: 1654.69
//
Query:       MMETSP1137-20121227|2801_1  [L=176]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.7e-12   43.2   0.0    1.2e-11   42.8   0.0    1.2  1  TIGR00869 sec62: protein translocation protein, Sec62 family


Domain annotation for each model (and alignments):
>> TIGR00869  sec62: protein translocation protein, Sec62 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.8   0.0   2.8e-15   1.2e-11     161     218 ..       2      69 ..       1      97 [. 0.72

  Alignments for each domain:
  == domain 1    score: 42.8 bits;  conditional E-value: 2.8e-15
   TIGR00869 161 ffavailrlvlfvltlvvvkpGiwifPnlladv.GfvdsfkPlysfhek.........dkykvkkkkk 218
                 f ++ ++r+vlf+l +++   Giw+fPnl++d   f  sf+P+++ ++          + +++++k+ 
  MMETSP1137-20121227|2801_1   2 FGVLCVVRFVLFCLMWIIGFRGIWLFPNLFDDNqTFAGSFMPIFGKGDPiiieedsdeEYWEHQRKRS 69 
                 66889**************************963799********99888888877652222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (176 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        93  (0.0226719); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.17u 0.14s 00:00:00.31 Elapsed: 00:00:00.31
# Mc/sec: 749.36
//
Query:       MMETSP1137-20121227|2802_1  [L=384]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-07   28.8   7.6    0.00014   18.9   1.3    2.3  2  TIGR00776 RhaT: RhaT L-rhamnose-proton symporter family protein


Domain annotation for each model (and alignments):
>> TIGR00776  RhaT: RhaT L-rhamnose-proton symporter family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   1.3   3.4e-08   0.00014      36     129 ..      56     152 ..      16     192 .. 0.73
   2 !   13.3   0.3   1.7e-06    0.0069      56     120 ..     299     362 ..     220     381 .. 0.80

  Alignments for each domain:
  == domain 1    score: 18.9 bits;  conditional E-value: 3.4e-08
   TIGR00776  36 vgalilsi...viailllpeftalsiflvgllsGalwalgqinqlksmrllGvSktmpistGlqLvvgtLlgvivfgewsvsistllG.llallliii 129
                 ++ali+     ++++  +p+   +  ++ +   G ++ ++++  +  + l G+ ++ p+ +G  Lv+gtLl+ ++ g  +++    +G  l+   i+ 
  MMETSP1137-20121227|2802_1  56 MAALIFMSagrAVMLHDQPDGA-MVHLVYAAAAGGIFNIANVLLVAGIGLAGLAVAFPVGIGTALVLGTLLTFLIDGRGDSPALLFGGvALGFTAILF 152
                 5666664411134444455543.555566677888999******************************************999888876444444443 PP

  == domain 2    score: 13.3 bits;  conditional E-value: 1.7e-06
   TIGR00776  56 lsiflvgllsGalwalgqinqlksmrllGvSktmpistGlqLvvgtLlgvivfgewsvsistllG 120
                 +s    gll+G++wa g i +l++ + lG+  +  i     +v +tL+g + ++e+   +   + 
  MMETSP1137-20121227|2802_1 299 TSQHGYGLLGGVVWATGTICNLLAGSELGLALSYAIGQAAPMV-ATLWGLFWYREFAGASCRSMA 362
                 6667789999*************99999999999888877765.799999999999765544444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (384 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       162  (0.0394929); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.27u 0.14s 00:00:00.41 Elapsed: 00:00:00.39
# Mc/sec: 1299.58
//
Query:       MMETSP1137-20121227|2803_1  [L=183]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (183 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        31  (0.00755729); expected 82.0 (0.02)
Passed bias filter:                       26  (0.00633837); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.17s 00:00:00.34 Elapsed: 00:00:00.33
# Mc/sec: 731.94
//
Query:       MMETSP1137-20121227|2804_1  [L=131]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (131 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       246  (0.0599707); expected 82.0 (0.02)
Passed bias filter:                      127  (0.0309605); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.13s 00:00:00.30 Elapsed: 00:00:00.30
# Mc/sec: 576.35
//
Query:       MMETSP1137-20121227|2805_1  [L=79]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (79 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        43  (0.0104827); expected 82.0 (0.02)
Passed bias filter:                       37  (0.00901999); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.15s 00:00:00.27 Elapsed: 00:00:00.40
# Mc/sec: 260.68
//
Query:       MMETSP1137-20121227|2806_1  [L=135]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (135 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        93  (0.0226719); expected 82.0 (0.02)
Passed bias filter:                       40  (0.00975134); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.14s 00:00:00.35 Elapsed: 00:00:00.40
# Mc/sec: 445.46
//
Query:       MMETSP1137-20121227|2807_1  [L=378]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (378 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       101  (0.0246221); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.15s 00:00:00.43 Elapsed: 00:00:00.31
# Mc/sec: 1609.42
//
Query:       MMETSP1137-20121227|2808_1  [L=284]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (284 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        58  (0.0141394); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.17s 00:00:00.39 Elapsed: 00:00:00.36
# Mc/sec: 1041.25
//
Query:       MMETSP1137-20121227|2809_1  [L=198]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (198 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        93  (0.0226719); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.15s 00:00:00.35 Elapsed: 00:00:00.28
# Mc/sec: 933.35
//
Query:       MMETSP1137-20121227|2810_1  [L=145]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (145 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        44  (0.0107265); expected 82.0 (0.02)
Passed bias filter:                       40  (0.00975134); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.18s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 659.95
//
Query:       MMETSP1137-20121227|2811_1  [L=148]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0033   14.3   0.0      0.004   14.0   0.0    1.1  1  TIGR03469 HpnB: hopene-associated glycosyltransferase HpnB


Domain annotation for each model (and alignments):
>> TIGR03469  HpnB: hopene-associated glycosyltransferase HpnB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.0   9.8e-07     0.004      15      97 ..      50     130 ..      40     142 .. 0.71

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 9.8e-07
   TIGR03469  15 lllfrgkfWradqrleaeeespvaaleawPevvavvPardeaevigeaveslleqdYpGklkvilvDDeseDgtaeiarevae 97 
                 l ++   f  a ++l ++ ++ +  ++ + +  a++Pa   a+ ig++v+++l+   p +  +i+vD+ ++ +  +  ++v +
  MMETSP1137-20121227|2811_1  50 LWALNDPFLLAFTPLPPKPTNWKNDPKFLARCGAIIPAHRSASEIGQTVRGILRHISPEN--IIVVDNAASPRPLDNTEQVVR 130
                 555555666666666666666666777888999*********************999875..799999876444444444433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (148 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        74  (0.01804); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.16u 0.14s 00:00:00.30 Elapsed: 00:00:00.33
# Mc/sec: 591.95
//
Query:       MMETSP1137-20121227|2812_1  [L=311]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.012   13.3   0.0      0.025   12.2   0.0    1.5  1  TIGR01855 IMP_synth_hisH: imidazole glycerol phosphate synthase, glutamine amidotransferase subunit
      0.022   12.4   0.0       0.57    7.7   0.0    2.2  2  TIGR00566 trpG_papA: glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase


Domain annotation for each model (and alignments):
>> TIGR01855  IMP_synth_hisH: imidazole glycerol phosphate synthase, glutamine amidotransferase subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   1.2e-05     0.025     161     185 ..     196     223 ..     182     230 .. 0.77

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 1.2e-05
   TIGR01855 161 ygekfvaavekdn...ivgvQFHPEkSg 185
                  g+ fv++ve ++   + g QFHPEkS 
  MMETSP1137-20121227|2812_1 196 RGKPFVSLVEAKHglpFWGSQFHPEKSI 223
                 4899******9985556799******95 PP

>> TIGR00566  trpG_papA: glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.0     0.013        26      67      91 ..      78     103 ..      23     112 .. 0.65
   2 ?    7.7   0.0   0.00028      0.57     163     185 ..     208     230 ..     180     231 .. 0.78

  Alignments for each domain:
  == domain 1    score: 2.3 bits;  conditional E-value: 0.013
   TIGR00566  67 liehlaGkl.PilGvClGhqalaqaf 91 
                 +     G + Pi G C G+  + q+ 
  MMETSP1137-20121227|2812_1  78 VAAYKVGDIfPIWGTCDGFEWMLQIA 103
                 3334457778*********9998865 PP

  == domain 2    score: 7.7 bits;  conditional E-value: 0.00028
   TIGR00566 163 rdlpleGvqfhPesilselGkel 185
                 + lp+ G qfhPe  + e+G++l
  MMETSP1137-20121227|2812_1 208 HGLPFWGSQFHPEKSIFEQGRRL 230
                 46899*********999*99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (311 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        63  (0.0153584); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.23u 0.14s 00:00:00.37 Elapsed: 00:00:00.61
# Mc/sec: 672.93
//
Query:       MMETSP1137-20121227|2813_1  [L=102]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.022   11.5   0.0      0.028   11.2   0.0    1.1  1  TIGR00998 8a0101: efflux pump membrane protein


Domain annotation for each model (and alignments):
>> TIGR00998  8a0101: efflux pump membrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   6.7e-06     0.028     118     182 ..      37      99 ..      21     101 .. 0.78

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 6.7e-06
   TIGR00998 118 eqareklkqaeldleRresllkkgliskEeldrarkallsakaaLeaaiqeaeaAnqalvrveel 182
                 ++ar  + ++ ++ +  ++ l++g+++ E+++  r +  s++a+  a+  +a++A+ a++ ++++
  MMETSP1137-20121227|2813_1  37 HAARRDIEETVVEVAEAVPCLAAGVLPGEDITADRGTGDSERADAAAS--DANSAAAAMMLGQPV 99 
                 3445556666699999*************************9975555..568999999988876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (102 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       115  (0.0280351); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.14u 0.18s 00:00:00.32 Elapsed: 00:00:00.40
# Mc/sec: 336.57
//
Query:       MMETSP1137-20121227|2814_1  [L=347]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.7e-27   93.2   2.7      2e-27   92.9   1.9    1.0  1  TIGR00957 MRP_assoc_pro: multi drug resistance-associated protein (MRP)
    1.8e-22   76.5   2.8    2.1e-22   76.3   2.0    1.0  1  TIGR01271 CFTR_protein: cystic fibrosis transmembrane conductor regulator (CFTR)
     0.0085   12.2   3.0      0.011   11.8   2.1    1.1  1  TIGR03375 type_I_sec_LssB: type I secretion system ATPase


Domain annotation for each model (and alignments):
>> TIGR00957  MRP_assoc_pro: multi drug resistance-associated protein (MRP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.9   1.9   1.5e-30     2e-27     303     599 ..      43     342 ..      18     346 .. 0.86

  Alignments for each domain:
  == domain 1    score: 92.9 bits;  conditional E-value: 1.5e-30
   TIGR00957 303 rkpsllkvlyktfgsyfllsflfkaiqdllsfagpkllellikfvndrkapdwqg..ylytallfvsallqtlvlqqyfhiifvsgvriktavvgavyrkalvitnsarksstvgeivnlmsvdaqrfmdlatylnllwsaplqvilalyllwlnlgpsvlagvavmvllvplnavvavktktyqvaqmkskdnriklmneilngikvlklyawelafkdkvlairqeelkvlkks.aylaavgtftwvctpflvali.tlavyvtvdennildakkafvslalfnilrlplnilpmviss 599
                    +l +++++ + + f l  l+ ++      ++p  + +l++ + + +  d  g  y ++ +l v+al+++l++qq       +g+r k a+  a+yrk l +  +a  s +  ++ nl+s d  r+   a ++  +w a + ++++  l    lg + + g+ +++ll  l+ vv +++   + + +   d r+klm+++l g   +k+  we a+  +v a+r  e   + +s + laa  +f +    f   l+ t   yv    +  +  + a+ +lalf il   ln++p+ i +
  MMETSP1137-20121227|2814_1  43 SSITLRNTVLELLAPRFQLLTLWMILSIAAEASQPICIGVLVRDLRKGEF-DRLGldYALCIFLGVTALVNSLAFQQVLWGGARCGMRAKLALSAALYRKVLTLDSTALLSXSASQMTNLISTDVMRLEMTAMFFHNIWGAAMSLVVCAVLTGVVLGTAAIPGIVFLLLLFVLQRVVGLRIGKIRRRVVAETDRRVKLMQDVLSGSTAIKVNVWEDAIGGRVRALRAREASSIAHSlTLLAALEAFIFFAPGFAAFLAlTADHYVSGLGDGEVKLEDAYTTLALFSILVKQLNVFPRAIKA 342
                 44555666777777778777788777777778888888888888776654.4455114555566689***************************************************************************************************************************************************************999887766626789999***99988877664255678887777788999********************99865 PP

>> TIGR01271  CFTR_protein: cystic fibrosis transmembrane conductor regulator (CFTR)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.3   2.0   1.5e-25   2.1e-22      41     362 ..      20     343 ..       9     347 .] 0.82

  Alignments for each domain:
  == domain 1    score: 76.3 bits;  conditional E-value: 1.5e-25
   TIGR01271  41 psvdsadnlseklerewdrelasakkkpkllnalrrcflwrflfygillylgevtkavqplllgriiasydaknaeereiayylalglsllfivrtlllhpaifglhhlgmqlrialfsliykktlklssrvldkistgqlvsllsnnlnkldeglalahfvwiaplqvvllvgliwelleasafcglgflillalvqallgkkmmkyrdkragkiserlaitseiieniqsvkaycweeamekiienirqvelk.ltrkvayvryfsssafffsgllvvvlsvvpyalikg.....iilrrifttisycivlrmtvtrqlpsaiqtw 362
                 p+ d    l e+++  w +          l n++   +  rf +  + + l+ ++ a qp+++g ++      + +   + y l++ l +  +v  l ++  ++g    gm+ ++al + +y+k+l l s  l   s  q+  l+s+++ +l+ +  + h +w a + +v++  l   +l ++a+ g+ fl+ll ++q ++g +++k r +     ++r+ +  +++    ++k+  we+a+   +  +r  e + ++  ++ +  +++   ff+  +  +l++    ++ g     ++l   +tt++   +l   +   +p ai+ +
  MMETSP1137-20121227|2814_1  20 PAEDDVGMLLERFQALWAKRKDD--SSITLRNTVLELLAPRFQLLTLWMILSIAAEASQPICIGVLVRDLRKGEFDRLGLDYALCIFLGVTALVNSLAFQQVLWGGARCGMRAKLALSAALYRKVLTLDSTALLSXSASQMTNLISTDVMRLEMTAMFFHNIWGAAMSLVVCAVLTGVVLGTAAIPGIVFLLLLFVLQRVVGLRIGKIRRRVVAETDRRVKLMQDVLSGSTAIKVNVWEDAIGGRVRALRAREASsIAHSLTLLAALEAFI-FFAPGFAAFLALTADHYVSGlgdgeVKLEDAYTTLALFSILVKQL-NVFPRAIKAF 343
                 55555555555555555544333..23445566666777799999999999*******************999999999****************************************************************************************************************************************************************************99861455555555555544.555555566666555444432222478888899887665554444.4577777765 PP

>> TIGR03375  type_I_sec_LssB: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.8   2.1   8.2e-06     0.011     217     361 ..     127     272 ..     123     300 .. 0.85

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 8.2e-06
   TIGR03375 217 gkkvdlilsaklfervlglrlearpasvGsfasqlrefesvrdfltsatltalvDLpfvllfllvia.liggplvlvplvavplvllvglllqkplsklaeeslresaqknallveslegletikalnaesrlqkkWeqvvaalak 361
                 g ++ l lsa+l+++vl l+  a  + + s +++l + + +r  +t+    ++   ++ l++ +v+  ++ g+ +++ +v ++l++++  ++  ++ k+ ++ ++e   +  l+ + l+g  +ik++  e  +  + + + a  a+
  MMETSP1137-20121227|2814_1 127 GMRAKLALSAALYRKVLTLDSTALLSXSASQMTNLISTDVMRLEMTAMFFHNIWGAAMSLVVCAVLTgVVLGTAAIPGIVFLLLLFVLQRVVGLRIGKIRRRVVAETDRRVKLMQDVLSGSTAIKVNVWEDAIGGRVRALRAREAS 272
                 78999**************************************************999999998886255566666667777888899999***********************************98888777666666555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (347 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       131  (0.0319356); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.35u 0.18s 00:00:00.53 Elapsed: 00:00:00.46
# Mc/sec: 995.66
//
Query:       MMETSP1137-20121227|2815_1  [L=359]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (359 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        71  (0.0173086); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.17s 00:00:00.45 Elapsed: 00:00:00.41
# Mc/sec: 1155.71
//
Query:       MMETSP1137-20121227|2816_1  [L=377]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.8e-12   44.7   0.1    7.1e-08   29.5   0.0    3.0  2  TIGR01942 pcnB: poly(A) polymerase
    2.1e-12   44.3   0.0    9.3e-06   22.4   0.0    2.9  2  TIGR02692 tRNA_CCA_actino: CCA tRNA nucleotidyltransferase


Domain annotation for each model (and alignments):
>> TIGR01942  pcnB: poly(A) polymerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.5   0.0   4.1e-05     0.085     106     136 ..     150     180 ..     139     236 .. 0.70
   2 !   29.5   0.0   3.5e-11   7.1e-08     164     223 ..     273     332 ..     263     347 .. 0.88

  Alignments for each domain:
  == domain 1    score: 9.5 bits;  conditional E-value: 4.1e-05
   TIGR01942 106 rilkdnvyGsleEDalRRDFtvnaLyYDpsk 136
                 r+ + +v G+ e DalRRD t+ a+   +++
  MMETSP1137-20121227|2816_1 150 RVPVRDVRGTPEQDALRRDLTIGAMLLQVEH 180
                 66566699**************998765544 PP

  == domain 2    score: 29.5 bits;  conditional E-value: 3.5e-11
   TIGR01942 164 ykeDPvRmLRalrlaakleftidektakpiresvslLkeisaaRlfeEilKllfsGkaaa 223
                  ++DPvR+LRalr++akl+ft++   ++    + sl  +++ aR + E++Kl  +G++  
  MMETSP1137-20121227|2816_1 273 LRDDPVRVLRALRFSAKLGFTLHXGLLTVPFALTSLQTKVAGARKYTELVKLCKTGRSSL 332
                 689********************9999888889999999*****************9964 PP

>> TIGR02692  tRNA_CCA_actino: CCA tRNA nucleotidyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.4   0.0   4.5e-09   9.3e-06      72     201 ..     116     266 ..      91     274 .. 0.63
   2 !   17.9   0.0   9.9e-08    0.0002     166     219 ..     273     326 ..     269     349 .. 0.83

  Alignments for each domain:
  == domain 1    score: 22.4 bits;  conditional E-value: 4.5e-09
   TIGR02692  72 wdtGiafGtvsaekddeqvei.ttfrsdaydrtsrkpevefGdtleedlirrdftvnalavrvaadgsl...............efvdplgGledllakvldtpaapeksfsddplrmlra...arfvsqlgfe..vaervlaalkemaer 201
                  dt   f + +    + +v++  t   + yd + r p      t e+d +rrd+t+ a+ ++v++ ++l               ++ d +gGled++++vl++p    + ++     +lr+     ++sqlg    v+    aa ++m +r
  MMETSP1137-20121227|2816_1 116 VDTAKMFLSAGEPPVKVEVDVmPTIGDEHYDDVNRVPVRDVRGTPEQDALRRDLTIGAMLLQVEHGAALplrdgaaaaadaltwTLLDYYGGLEDIRDGVLRSPYPNRQPLKQVWSEVLRSpeeQLLASQLGIVpvVDAADSAAEAKMLQR 266
                 45555554443333333444324778899*******************************9997643321111111222222226789999***********9987776666555444444111668889886321333334444555555 PP

  == domain 2    score: 17.9 bits;  conditional E-value: 9.9e-08
   TIGR02692 166 fsddplrmlraarfvsqlgfevaervlaalkemaerierisaervraeldklll 219
                 + ddp+r+lra rf+++lgf++    l+   ++++  ++++  r  +el kl  
  MMETSP1137-20121227|2816_1 273 LRDDPVRVLRALRFSAKLGFTLHXGLLTVPFALTSLQTKVAGARKYTELVKLCK 326
                 68*********************9998888888888888888899999988754 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (377 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        64  (0.0156021); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.33u 0.17s 00:00:00.50 Elapsed: 00:00:00.49
# Mc/sec: 1015.51
//
Query:       MMETSP1137-20121227|2817_1  [L=345]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.2e-45  152.6   0.0    3.8e-45  151.0   0.0    1.7  1  TIGR00307 S8e: ribosomal protein S8.e


Domain annotation for each model (and alignments):
>> TIGR00307  S8e: ribosomal protein S8.e
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  151.0   0.0   9.2e-49   3.8e-45       1     127 []       1     330 [.       1     330 [. 1.00

  Alignments for each domain:
  == domain 1    score: 151.0 bits;  conditional E-value: 9.2e-49
   TIGR00307   1 maisr.grskrkatGakrrkarkkrkyelGrepaetkigekrikkvrtrGGnkkvrllrietanvsdaeeGkvkkvriagvvenpannelvrrnvltkaaiveidig..........................................................................................................................................................................................................karvtsrPgqdGvvdgvllee 127
                 m+isr +++kr+ tG+k+ +  kkrk+e+Gr+ a tkig+kr++ vr rGGn k+r+lr +t+n+s+ +e  ++k+ri  vv+n +nnelvr+ +l k aiv+id++                                                                                                                                                                                                           a+++srPgq G++dg++le+
  MMETSP1137-20121227|2817_1   1 MGISRdSQHKRRLTGGKKPHHHKKRKHEMGRQMAMTKIGAKRVHPVRCRGGNIKFRALRLDTGNFSWGSEVCTRKTRILDVVYNASNNELVRTKTLVKNAIVQIDATcvvatfsasppqacfteaqlqsxvlitvlaltsrlplvslivffthrdlgmrwaydrfdaglvevaaiwmrfsggxssdtlsvvvavaalvalkvdxlwmhavlraracpqvsanavfaycssaplfgttqltrslgwscaqavppvdeahygvvvgkkrraddkeeekkklstrsqakitarqegrqldpninsqfdtgrlLACISSRPGQCGRCDGYVLEG 330
                 89*************************************************************************************************************************************************************************************************************************************************************************************************************************************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (345 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       108  (0.0263286); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.29u 0.12s 00:00:00.41 Elapsed: 00:00:00.41
# Mc/sec: 1110.64
//
Query:       MMETSP1137-20121227|2818_1  [L=368]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (368 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        35  (0.00853242); expected 82.0 (0.02)
Passed bias filter:                       31  (0.00755729); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.13s 00:00:00.38 Elapsed: 00:00:00.35
# Mc/sec: 1387.77
//
Query:       MMETSP1137-20121227|2819_1  [L=398]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (398 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       111  (0.02706); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.15s 00:00:00.43 Elapsed: 00:00:00.42
# Mc/sec: 1250.75
//
Query:       MMETSP1137-20121227|2820_1  [L=184]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (184 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        48  (0.0117016); expected 82.0 (0.02)
Passed bias filter:                       39  (0.00950756); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.13s 00:00:00.30 Elapsed: 00:00:00.52
# Mc/sec: 467.04
//
Query:       MMETSP1137-20121227|2821_1  [L=594]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (594 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        56  (0.0136519); expected 82.0 (0.02)
Passed bias filter:                       36  (0.00877621); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.13s 00:00:00.50 Elapsed: 00:00:00.55
# Mc/sec: 1425.48
//
Query:       MMETSP1137-20121227|2822_1  [L=691]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (691 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       104  (0.0253535); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.12s 00:00:00.55 Elapsed: 00:00:00.56
# Mc/sec: 1628.65
//
Query:       MMETSP1137-20121227|2824_1  [L=209]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (209 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.14s 00:00:00.33 Elapsed: 00:00:00.55
# Mc/sec: 501.56
//
Query:       MMETSP1137-20121227|2826_1  [L=57]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        51  (0.012433); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.15s 00:00:00.28 Elapsed: 00:00:00.67
# Mc/sec: 112.29
//
Query:       MMETSP1137-20121227|2827_1  [L=707]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     5e-154  511.3   2.3   8.5e-140  464.3   0.8    2.2  2  TIGR00514 accC: acetyl-CoA carboxylase, biotin carboxylase subunit
   1.1e-152  508.1   5.7   1.6e-128  428.0   1.0    3.0  3  TIGR02712 urea_carbox: urea carboxylase
   7.1e-142  472.0   7.6   8.1e-118  392.3   0.6    3.0  3  TIGR01235 pyruv_carbox: pyruvate carboxylase
    3.7e-17   59.1   0.0      5e-17   58.6   0.0    1.1  1  TIGR01369 CPSaseII_lrg: carbamoyl-phosphate synthase, large subunit
    2.8e-13   47.4   0.0    4.6e-13   46.6   0.0    1.2  1  TIGR01205 D_ala_D_alaTIGR: D-alanine--D-alanine ligase
    3.2e-10   36.9   0.0    3.2e-10   36.9   0.0    1.7  2  TIGR01108 oadA: oxaloacetate decarboxylase alpha subunit
    2.8e-09   35.5   0.4    1.2e-08   33.4   0.2    2.2  2  TIGR00531 BCCP: acetyl-CoA carboxylase, biotin carboxyl carrier protein
      3e-08   31.2   0.1    6.2e-08   30.1   0.0    1.6  1  TIGR01161 purK: phosphoribosylaminoimidazole carboxylase, ATPase subunit
    2.4e-07   28.2   0.0    2.3e-06   25.0   0.0    2.1  1  TIGR00768 rimK_fam: alpha-L-glutamate ligases, RimK family
    4.1e-07   27.2   0.1    1.4e-06   25.4   0.0    1.8  1  TIGR02144 LysX_arch: lysine biosynthesis enzyme LysX
    5.7e-07   26.6   2.1    9.8e-07   25.8   1.4    1.3  1  TIGR01142 purT: phosphoribosylglycinamide formyltransferase 2
      2e-06   23.9   0.1    3.2e-06   23.2   0.1    1.3  1  TIGR02068 cya_phycin_syn: cyanophycin synthetase
    3.1e-06   24.1   0.5    6.9e-06   22.9   0.3    1.5  1  TIGR00877 purD: phosphoribosylamine--glycine ligase
    0.00045   16.7   1.4     0.0011   15.4   1.0    1.6  1  TIGR01348 PDHac_trf_long: dihydrolipoyllysine-residue acetyltransferase


Domain annotation for each model (and alignments):
>> TIGR00514  accC: acetyl-CoA carboxylase, biotin carboxylase subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  464.3   0.8  2.9e-142  8.5e-140      18     366 ..       1     349 [.       1     359 [. 0.98
   2 !   45.7   0.0   2.9e-15   8.4e-13     362     443 ..     388     469 ..     381     473 .. 0.95

  Alignments for each domain:
  == domain 1    score: 464.3 bits;  conditional E-value: 2.9e-142
   TIGR00514  18 lrackelGiktvavystadkdalhvkladeavciGeaasaksylnipniiaaaeitgadaihpGyGflsenadfaelveesgltfiGpsaeairlmGdkvsaketmkkagvpvvpGsdGlvedveeaveiakeiGypviikataGGGGrGlrvvreedelvkslkaakaeakaafnndgvylekfienprhveiqvladkyGnvvylgerdcsiqrrkqklleeapspaltselrkkiGeaavkaaksigytgaGtveflldkegefyflemntriqvehpvtemvtgvdlikeqirvakGeklslkqedvklkGhaiecrinaedpsknflpspGriksylppgGlgv 366
                 +r++k l ++t+a++s+ d +a hv +ad avc+G+aas+ sylni +i+ a + t a+a+hpGyGflsena+fae+ve++g++f+Gp + ai+ mGdk  +k+++ +agv ++pG +G+++d++eav++a e+G+pv+ika+aGGGG+G+r++ + +e +  ++++  ea++af+++ +++e+++++ rh+eiq+lad yG+ vyl er+csiqrr+qk++eeap+  l+    +++G+ av++ak++gy++aGt+efl+d ++++yflemntr+qvehpvtemv g+dl+++ +rva+Ge++ lkqed++  G+aie r+ aedp + flps G +k+y+ p   +v
  MMETSP1137-20121227|2827_1   1 MRTAKRLNMRTIALFSEPDANAPHVAMADTAVCVGPAASSASYLNIEAIMDAIHQTKAQAVHPGYGFLSENAHFAEMVEKAGVAFVGPGPGAISAMGDKIESKRIAMEAGVTTIPGFQGILKDEDEAVKVAIEVGFPVMIKASAGGGGKGMRIAWNAEEAAAGFAVSSREAASAFGDNRIFIERYVDQSRHIEIQLLADAYGECVYLPERECSIQRRNQKVVEEAPAAHLSRRTVEAMGKEAVALAKAVGYRSAGTLEFLVDAQQQHYFLEMNTRLQVEHPVTEMVSGIDLVEAMLRVAAGERMWLKQEDLRPIGWAIESRLYAEDPLRGFLPSIGTLKRYKHPEQDAV 349
                 699**************************************************************************************************************************************************************************************************************************************************************************************************************************************************99876555 PP

  == domain 2    score: 45.7 bits;  conditional E-value: 2.9e-15
   TIGR00514 362 gGlgvrvdsavysgyavppyydsliaklivygktreeaiarmkralkeliieGikttidfhkliledekfkkgevdikylek 443
                 + ++vrvd  v  g ++  +yd +i+kl+++g++r++a + m  al+  ii G+  + +f + ++ +e+f +g++ ++++++
  MMETSP1137-20121227|2827_1 388 AIPAVRVDDGVREGSEIAMHYDPMISKLVTHGRDRDHARQLMIAALDRYIIRGLVHNQNFLRSLMCHERFASGQLTTSFIKE 469
                 5689***************************************************************************987 PP

>> TIGR02712  urea_carbox: urea carboxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  428.0   1.0  5.6e-131  1.6e-128      17     371 ..       1     358 [.       1     368 [. 0.96
   2 !   58.2   0.0   2.4e-19     7e-17     361     441 ..     390     469 ..     375     476 .. 0.93
   3 !   22.4   0.1   1.6e-08   4.7e-06    1135    1199 ..     640     704 ..     632     706 .. 0.92

  Alignments for each domain:
  == domain 1    score: 428.0 bits;  conditional E-value: 5.6e-131
   TIGR02712  17 irtlkklgirsvavysdadkasqhvkdadeavalgeataaesylkidkileiakktgaeaiiPGyGflsenaafaeaceaagivfvGPtpeqlrklGlkhtarelaeaagvPllpG.tgllesleealeaaeeigyPvmlkstaGGGGiGlqkvdsaeeleeafesvkrlgesffsdagvflekfvekarhvevqilGdgkGkvvalgerdCslqrrnqkvveetPaPnlpeevrekllkaaeklaeavnyrsaGtvefiydekrdefyflevntrlqvehpvteavtgldlvewmvrlaageapdldelkvekprGaaiearvyaedPakdfqPspGlltevkfPed....vrvdtwve 371
                 +rt+k+l++r++a++s++d+++ hv  ad+av++g+a+++ syl+i+ i+++ ++t+a+a++PGyGflsena+fae +e+ag++fvGP p  +  +G k  ++ +a +agv  +pG  g+l++ +ea+++a e+g+Pvm+k++aGGGG G++   +aee ++ f    r ++s f+d+++f+e++v+++rh+e+q+l d  G+ v l er+Cs+qrrnqkvvee+Pa +l++++ e++ k a++la+av yrsaGt+ef+ d+++ + yfle+ntrlqvehpvte+v g+dlve m+r+aage   l++    +p G aie r+yaedP++ f Ps G+l + k Pe+    + vd+  +
  MMETSP1137-20121227|2827_1   1 MRTAKRLNMRTIALFSEPDANAPHVAMADTAVCVGPAASSASYLNIEAIMDAIHQTKAQAVHPGYGFLSENAHFAEMVEKAGVAFVGPGPGAISAMGDKIESKRIAMEAGVTTIPGfQGILKDEDEAVKVAIEVGFPVMIKASAGGGGKGMRIAWNAEEAAAGFAVSSREAASAFGDNRIFIERYVDQSRHIEIQLLADAYGECVYLPERECSIQRRNQKVVEEAPAAHLSRRTVEAMGKEAVALAKAVGYRSAGTLEFLVDAQQ-QHYFLEMNTRLQVEHPVTEMVSGIDLVEAMLRVAAGERMWLKQEDL-RPIGWAIESRLYAEDPLRGFLPSIGTLKRYKHPEQdavvAAVDGIAD 358
                 69******************************************************************************************************************568***********************************************************************************************************************************************976.67************************************99999887.88*******************************99666556666555 PP

  == domain 2    score: 58.2 bits;  conditional E-value: 2.4e-19
   TIGR02712 361 PedvrvdtwvekGtevsaeydPmlakiivhgkdreealeklkkaleetkvaGivtnldylksivssevfrkakvstrllek 441
                 P +vrvd  v++G e++ +ydPm++k+++hg+dr++a++ + +al++  + G+v n ++l+s++ +e f++++ +t+++++
  MMETSP1137-20121227|2827_1 390 P-AVRVDDGVREGSEIAMHYDPMISKLVTHGRDRDHARQLMIAALDRYIIRGLVHNQNFLRSLMCHERFASGQLTTSFIKE 469
                 4.79************************************************************************99865 PP

  == domain 3    score: 22.4 bits;  conditional E-value: 1.6e-08
   TIGR02712 1135 veselagrlWkvlvevgdeveagdklviveamkmelavsapvaGkvkkilvkeGdaveaGdalvv 1199
                  + s++ g l  + v  gd v ag++l +veamkm+ ++ a  + +v+k+ v  G ++++ d +v 
  MMETSP1137-20121227|2827_1  640 LLSPMPGVLVSIAVGAGDMVVAGQQLCVVEAMKMQNVILAERNAVVQKVFVDVGATLATDDPIVA 704 
                  56888999999*********************************************999988875 PP

>> TIGR01235  pyruv_carbox: pyruvate carboxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  392.3   0.6  2.8e-120  8.1e-118      16     367 ..       2     344 ..       1     360 [. 0.98
   2 !   41.5   0.0   2.3e-14   6.6e-12     372     451 ..     392     470 ..     377     495 .. 0.91
   3 !   40.7   0.4     4e-14   1.2e-11    1079    1142 ..     642     705 ..     634     706 .. 0.94

  Alignments for each domain:
  == domain 1    score: 392.3 bits;  conditional E-value: 2.8e-120
   TIGR01235  16 raanelgirtvavyseedklslhrqkadeaylvGeggqlaPveaylsideiirvakknkvdaihPGyGflsensefadkvekaGivfiGPkaevldqlGdkvaarelaikagvPvvPgtdgpvetleevldfakaiGyPvilkaayGGGGrGmrvvrseeevadaferakseakaafGndevyveklierpkhievqllgdkaGnvvhlferdcsvqrrhqkvvevaPakslsrevrdklaeaavklakevnyinaGtveflvdedtkfyfievnpriqvehtvteeitGidivkaqikvaeGaslpskklglpeqediktkGyaiqcrvttedPakdflPdtGrievyrsa 367
                 r+a+ l++rt+a++se d  + h   ad a  vG +   a   +yl+i+ i++  ++ k+ a+hPGyGflsen++fa+ vekaG+ f+GP +  ++ +Gdk+++++ a++agv ++Pg +g  ++ +e++++a + G+Pv++ka+ GGGG+Gmr+  + ee a  f  +++ea +afG++ +++e+++++++hie+qll+d  G+ v+l er+cs+qrr+qkvve aPa +lsr   +++ ++av+lak+v+y++aGt eflvd+++++yf+e+n+r+qveh vte+++Gid+v+a ++va+G  +      l+ qed++ +G+ai +r+ +edP + flP+ G ++ y+  
  MMETSP1137-20121227|2827_1   2 RTAKRLNMRTIALFSEPDANAPHVAMADTAVCVGPA---ASSASYLNIEAIMDAIHQTKAQAVHPGYGFLSENAHFAEMVEKAGVAFVGPGPGAISAMGDKIESKRIAMEAGVTTIPGFQGILKDEDEAVKVAIEVGFPVMIKASAGGGGKGMRIAWNAEEAAAGFAVSSREAASAFGDNRIFIERYVDQSRHIEIQLLADAYGECVYLPERECSIQRRNQKVVEEAPAAHLSRRTVEAMGKEAVALAKAVGYRSAGTLEFLVDAQQQHYFLEMNTRLQVEHPVTEMVSGIDLVEAMLRVAAGERMW-----LK-QEDLRPIGWAIESRLYAEDPLRGFLPSIGTLKRYKHP 344
                 99********************************99...67789*******************************************************************************************************************************************************************************************************************************************************************9988.....55.********************************99865 PP

  == domain 2    score: 41.5 bits;  conditional E-value: 2.3e-14
   TIGR01235 372 vrldggnayaGaiispyydsllvkvsasastleeaaakmvralrefrirGvktnipfleavlenekflegsydtsfidet 451
                 vr+d g   +G+ i+ +yd+++ k+++++ + ++a++ m+ al  + irG+  n  fl +++ +e+f  g+++tsfi e+
  MMETSP1137-20121227|2827_1 392 VRVDDGV-REGSEIAMHYDPMISKLVTHGRDRDHARQLMIAALDRYIIRGLVHNQNFLRSLMCHERFASGQLTTSFIKEE 470
                 7888875.58999****************************************************************763 PP

  == domain 3    score: 40.7 bits;  conditional E-value: 4e-14
   TIGR01235 1079 apmpGvvievkvkaGskvekGdvlvvleamkmetvvqapkdGtvkevlvkdGekidaedlllvl 1142
                  +pmpGv++ + v aG+ v +G++l v+eamkm+ v+ a+++ +v++v+v  G  + ++d ++ +
  MMETSP1137-20121227|2827_1  642 SPMPGVLVSIAVGAGDMVVAGQQLCVVEAMKMQNVILAERNAVVQKVFVDVGATLATDDPIVAF 705 
                  79*********************************************************99876 PP

>> TIGR01369  CPSaseII_lrg: carbamoyl-phosphate synthase, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.6   0.0   1.7e-19     5e-17     616     870 ..      44     305 ..      41     337 .. 0.84

  Alignments for each domain:
  == domain 1    score: 58.6 bits;  conditional E-value: 1.7e-19
   TIGR01369 616 ltvedvldiiekekvegvivqlgGqt.alnlakeleeagvkilGtsaesidraEdRekFsklldelgikqpkg..keatsveeakeiakeigyPvlvRpsyvlgGrameiveneeeleryle....eavevskekPvlidkyledavEvdvDavad..geevliagileHiEeaGvHsGDstlvlppqklseevkkkikeivkkiakelkvkGllniqfvvkd.eevyviEvnvRasRtvPfvskalgvplvklavkvllgkkle 870
                 l++e ++d i++ k + v   +g      ++a+ +e+agv  +G  + +i  + d+ + +++  e g+  + g   ++++ +ea+++a e+g+Pv++++s   gG++m+i+ n ee ++ +     ea+++  ++ + i++y++++  +++ ++ad  ge v+ +     i +        +   p+ +ls+ +++++ + + ++ak++ ++    + f+v+  ++ y +E+n R     P+   + g++lv+ + +v +g+++ 
  MMETSP1137-20121227|2827_1  44 LNIEAIMDAIHQTKAQAVHPGYGFLSeNAHFAEMVEKAGVAFVGPGPGAISAMGDKIESKRIAMEAGVTTIPGfqGILKDEDEAVKVAIEVGFPVMIKASAGGGGKGMRIAWNAEEAAAGFAvssrEAASAFGDNRIFIERYVDQSRHIEIQLLADayGECVYLPERECSIQRR---NQKVVEEAPAAHLSRRTVEAMGKEAVALAKAVGYRSAGTLEFLVDAqQQHYFLEMNTRLQVEHPVTEMVSGIDLVEAMLRVAAGERMW 305
                 67899999999999888777666543134689************************************9987522689***********************************99988755433447777788999******************98324555555554444443...34455568***********************************9975899*********************************99875 PP

>> TIGR01205  D_ala_D_alaTIGR: D-alanine--D-alanine ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.6   0.0   1.6e-15   4.6e-13      74     285 ..      66     274 ..      45     275 .. 0.79

  Alignments for each domain:
  == domain 1    score: 46.6 bits;  conditional E-value: 1.6e-15
   TIGR01205  74 GrdGEDGtiqglLellgipyvGsgvlaSalsmdKlltKlllkalglpvad.yavlerkeekseeaekekleklglpvivKpareGSSvGvskvkseeeleeale....eafey..deevlveea.ikgrelevsvlekeealpiieiveekekedFydYeaKYldgsaelvipaelseeeeekikelalkaykalgcrglaRvDfflekegeiylnEiNt 285
                 G   E+   + + e +g+++vG+g  a  +  dK+ +K+++ ++g+ + + ++ + +     e++ ++++ ++g+pv++K++  G   G+ ++ + ee ++ ++    ea++   d+++++e++  ++r +e+ +l  +   +++  +e ++     +  ++ +++  e +  a+ls +  e++ + a+ + ka+g r  + ++f+++++ + y++E+Nt
  MMETSP1137-20121227|2827_1  66 GFLSENAHFAEMVEKAGVAFVGPGPGAISAMGDKIESKRIAMEAGVTTIPgFQGILKD----EDEAVKVAIEVGFPVMIKASAGGGGKGMRIAWNAEEAAAGFAvssrEAASAfgDNRIFIERYvDQSRHIEIQLLA-DAYGECVYLPEREC-----SI-QRRNQKVVEEAPAAHLSRRTVEAMGKEAVALAKAVGYRSAGTLEFLVDAQQQHYFLEMNT 274
                 445588888999**************999999**************987725555322....2234567789**********************99998775541111333323599*******44689********.66555555555555.....33.333444566677788********************************************9 PP

>> TIGR01108  oadA: oxaloacetate decarboxylase alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.9       2.2   6.3e+02     494     537 ..     356     402 ..     343     407 .. 0.44
   2 !   36.9   0.0   1.1e-12   3.2e-10     512     580 ..     632     700 ..     608     702 .. 0.89

  Alignments for each domain:
  == domain 1    score: -3.7 bits;  conditional E-value: 2.2
   TIGR01108 494 vskleasaaaaksagtva...akakastdvtaplaGsivkvkvseGd 537
                 ++++++ +++++s+gt++   +++++++ + a+++   v+  v+eG+
  MMETSP1137-20121227|2827_1 356 IADTTTGTTTGTSTGTTTgttTDTDSVAAIVAAIPAVRVDDGVREGS 402
                 33444444444444444422233344444444444444444444444 PP

  == domain 2    score: 36.9 bits;  conditional E-value: 1.1e-12
   TIGR01108 512 akakastdvtaplaGsivkvkvseGdevkeGevllvleamkmeteikaaaaGiveeilvkkGdkvavge 580
                 +++   + + +p++G +v ++v +Gd v +G+ l v+eamkm++ i a ++ +v++++v +G+++a+++
  MMETSP1137-20121227|2827_1 632 PPSPHEGALLSPMPGVLVSIAVGAGDMVVAGQQLCVVEAMKMQNVILAERNAVVQKVFVDVGATLATDD 700
                 44555678999*****************************************************99987 PP

>> TIGR00531  BCCP: acetyl-CoA carboxylase, biotin carboxyl carrier protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0       7.3   2.1e+03      85     108 ..     333     356 ..     332     361 .. 0.83
   2 !   33.4   0.2   4.1e-11   1.2e-08     102     154 ..     653     705 ..     634     707 .] 0.89

  Alignments for each domain:
  == domain 1    score: -3.1 bits;  conditional E-value: 7.3
   TIGR00531  85 PmvGtFYrapsPeakpfvevGdkv 108
                 P +Gt  r   Pe+++ v + d +
  MMETSP1137-20121227|2827_1 333 PSIGTLKRYKHPEQDAVVAAVDGI 356
                 7899*99999***99999987766 PP

  == domain 2    score: 33.4 bits;  conditional E-value: 4.1e-11
   TIGR00531 102 vevGdkvkkgdvvciveAmklmneieaevagkvveilvedgqpveygepLivi 154
                 v +Gd v  g+ +c+veAmk+ n i ae ++ v+++ v+ g +   ++p++  
  MMETSP1137-20121227|2827_1 653 VGAGDMVVAGQQLCVVEAMKMQNVILAERNAVVQKVFVDVGATLATDDPIVAF 705
                 7799*************************************999999888765 PP

>> TIGR01161  purK: phosphoribosylaminoimidazole carboxylase, ATPase subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.1   0.0   2.1e-10   6.2e-08      77     252 ..      76     262 ..       1     276 [. 0.67

  Alignments for each domain:
  == domain 1    score: 30.1 bits;  conditional E-value: 2.1e-10
   TIGR01161  77 ekleakg.vkvapspealallqdkltqkqllqklglav.peflvelkeeeelekaleelglpvvlKarkggYDGrGqfvikseeel........eqalkalgdkelivEefvkfekElsvivaRskeGevafyPvven.lqkdgilrlvvapa.alpeklqkkaeelarklveeldlvGvlavElFll 252
                 e +e+ g + v p p a+  + dk++ k++  ++g+ + p f+  lk+e+e  k++ e+g+pv++Ka+ gg  G+G  +  + ee+        ++a++a+gd+ +++E++v+ ++ + +    ++ Ge++  P  e  +q+ +  ++  apa  l +++ +++ + a +l++++++    ++E+ + 
  MMETSP1137-20121227|2827_1  76 EMVEKAGvAFVGPGPGAISAMGDKIESKRIAMEAGVTTiPGFQGILKDEDEAVKVAIEVGFPVMIKASAGG-GGKGMRIAWNAEEAaagfavssREAASAFGDNRIFIERYVDQSRHIEIQLLADAYGECVYLPERECsIQRRNQKVVEEAPAaHLSRRTVEAMGKEAVALAKAVGYRSAGTLEFLVD 262
                 3333344345779******************99999753788888899999999999**********9988.7*****99988876222333325778889999******************************988526666777777777734555555555566666677777777777777665 PP

>> TIGR00768  rimK_fam: alpha-L-glutamate ligases, RimK family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.0   0.0   7.8e-09   2.3e-06      56     274 ..      66     297 ..      38     299 .. 0.66

  Alignments for each domain:
  == domain 1    score: 25.0 bits;  conditional E-value: 7.8e-09
   TIGR00768  56 vssdrglavlraleslGveviNs.sqaienagdKllssalLakaglpl.p.ktlvagseeeakklieeigfPvvlKpvfGswGklvvlvedkqeaek.llealeqlke..kykvflvQeyikksggrdiRvfV.vgdevvaaiyrikseefrsNlarGgkaekcelt....eeieelaikaakalgldvag.iDllesedkgllvlEvNasvefkn..sekvtgvniAeklld 274
                  + +++   + ++e++Gv  + + + ai + gdK+ s  + ++ag+ + p  ++++++e+ea k++ e+gfPv +K   G  Gk++  + + +ea++    + ++ +     + +++  y+++s + +i  +    +e v   +r + +  r N +   +a  ++l+    e+  + a+  aka+g   ag   +l + ++   +lE+N   + ++  +e+v+g+++ e +l+
  MMETSP1137-20121227|2827_1  66 GFLSENAHFAEMVEKAGVAFVGPgPGAISAMGDKIESKRIAMEAGVTTiPgFQGILKDEDEAVKVAIEVGFPVMIKASAGGGGKGMRIAWNAEEAAAgFAVSSREAASafGDNRIFIERYVDQSRHIEIQLLAdAYGECVYLPER-ECSIQRRNQKVVEEAPAAHLSrrtvEAMGKEAVALAKAVGYRSAGtLEFLVDAQQQHYFLEMNTRLQVEHpvTEMVSGIDLVEAMLR 297
                 556778889999*********985789******************98634247899****************************99776555544441444444444424568899999**999988887654223444444444.333334444333333333333111123344477777777776665357777777777777777755444322677777777777665 PP

>> TIGR02144  LysX_arch: lysine biosynthesis enzyme LysX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.4   0.0   4.9e-09   1.4e-06      64     192 ..      74     206 ..      68     246 .. 0.81

  Alignments for each domain:
  == domain 1    score: 25.4 bits;  conditional E-value: 4.9e-09
   TIGR02144  64 saalleelGvkvins.seviiacgdKvfttlkLakagvPt.Pk.tivafdkeaalklaeelGyPvvlKPveGsWGrlvskvkdkdeaea..llehkevlkgsqlklylvqEyinkpgRDiRvfviGdeaiaaiy 192
                  a ++e++Gv  + +   +i a gdK+ ++ + ++agv t P  +++  d+++a+k+a e+G+Pv++K   G  G+ +  + +++ea a   +  +e+++ +  +  ++  y+++  R i +  + d    ++y
  MMETSP1137-20121227|2827_1  74 FAEMVEKAGVAFVGPgPGAISAMGDKIESKRIAMEAGVTTiPGfQGILKDEDEAVKVAIEVGFPVMIKASAGGGGKGMRIAWNAEEAAAgfAVSSREAASAFGDNRIFIERYVDQ-SRHIEIQLLADAYGECVY 206
                 68899********973579******************976465357999************************999777766666555422678899999998888899999986.588888887777777766 PP

>> TIGR01142  purT: phosphoribosylglycinamide formyltransferase 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.8   1.4   3.3e-09   9.8e-07      18     279 ..       4     283 ..       2     303 .. 0.73

  Alignments for each domain:
  == domain 1    score: 25.8 bits;  conditional E-value: 3.3e-09
   TIGR01142  18 aqrLGveviavDryada..Pamqvahrsvvv.......dmlDadalravierekPdfivpeieaiatdaLle..lekegyevv.Pnaratkltmnreglrrlaaeelglptak.ye.fadsleeleeavekiGfPcvvkpvmsssGkGqsvvkgpediekaWeeakegarg..saerviveefidfdveitl.ltvravdgvvefcaPiGhrqedgdykesWqP.qelsekaleeakeiakrvvdaLGGlGlfGvelfvkg.devifsevsprPhdtglvt 279
                 a+rL +++ia  +  da  P   +a+ +v v       + l+ +a++  i++ k +++ p    ++ +a ++  +ek+g+  v P   a+    ++ + +r+ a e+g+ t + ++   +  +e  +++ ++GfP+++k+ ++  GkG  +  ++e+ ++ +  + ++a +   ++r+ +e ++d    i + l   a+++ v +++     q + ++     P ++ls++++e+  + a  + +a+G +     e++v   ++ +f e+ +r +    vt
  MMETSP1137-20121227|2827_1   4 AKRLNMRTIALFSEPDAnaPHVAMADTAVCVgpaassaSYLNIEAIMDAIHQTKAQAVHPGYGFLSENAHFAemVEKAGVAFVgPGPGAISAMGDKIESKRI-AMEAGVTTIPgFQgILKDEDEAVKVAIEVGFPVMIKASAGGGGKGMRIAWNAEEAAAGFAVSSREAASafGDNRIFIERYVDQSRHIEIqLLADAYGECVYLPERECSIQRRNQKVVEEAPaAHLSRRTVEAMGKEAVALAKAVGYRSAGTLEFLVDAqQQHYFLEMNTRLQVEHPVT 283
                 6788888888866655500545555555543333332267899999999***********999998887654348999*87762666666555555555565.566788886526524577889999999******************************9999886665522689*********987665414456667789999998888888777655555268999999999999999******999999999997615678999888866555555 PP

>> TIGR02068  cya_phycin_syn: cyanophycin synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.2   0.1   1.1e-08   3.2e-06     210     299 ..      95     191 ..      30     200 .. 0.79

  Alignments for each domain:
  == domain 1    score: 23.2 bits;  conditional E-value: 1.1e-08
   TIGR02068 210 iasDkeltkklLkaaGvP.vPeGt.vvqsaeeaeeaaeelGyPvvikPldGnhGrGvtiniesreeiesayeaakees......seviverfikGrdh 299
                    Dk+  k++  +aGv  +P  + +++ ++ea+++a e+G+Pv+ik   G  G+G+ i  ++  e+ + +++++ e+      + + +er++  + h
  MMETSP1137-20121227|2827_1  95 AMGDKIESKRIAMEAGVTtIPGFQgILKDEDEAVKVAIEVGFPVMIKASAGGGGKGMRIAWNAE-EAAAGFAVSSREAasafgdNRIFIERYVDQSRH 191
                 4569************9724543325688999***************************98765.555555544433322333667999999876655 PP

>> TIGR00877  purD: phosphoribosylamine--glycine ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.9   0.3   2.3e-08   6.9e-06      81     192 ..      75     187 ..      39     206 .. 0.85

  Alignments for each domain:
  == domain 1    score: 22.9 bits;  conditional E-value: 2.3e-08
   TIGR00877  81 vdaleeaGikvfGpkkeAaklEasKafakdllkkagipta.eye.vftepeeakeyieekgapaivvkadgLaaGKgvivvkdeeealkaveeilekkkfgeagekvviEefle 192
                 ++++e+aG+  +Gp   A    ++K  +k++  +ag+ t+  ++ ++++ +ea +   e+g+p +++ka+   +GKg  ++ + eea +  +   ++ +   + +++ iE +++
  MMETSP1137-20121227|2827_1  75 AEMVEKAGVAFVGPGPGAISAMGDKIESKRIAMEAGVTTIpGFQgILKDEDEAVKVAIEVGFP-VMIKASAGGGGKGMRIAWNAEEAAAGFAVSSREAASAFGDNRIFIERYVD 187
                 6899**********************************651454368999************9.999***99*********999999886665555554455778899999986 PP

>> TIGR01348  PDHac_trf_long: dihydrolipoyllysine-residue acetyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   1.0   3.7e-06    0.0011     171     229 ..     648     706 ..     643     707 .] 0.78

  Alignments for each domain:
  == domain 1    score: 15.4 bits;  conditional E-value: 3.7e-06
   TIGR01348 171 vievlvkvGdtvsadqslitlesdkaslevPapasGvvkslkvkvGdkvktGdlilvle 229
                 ++ + v +Gd v a+q l  +e+ k    + a+   vv+++ v+vG ++ t d i+ +e
  MMETSP1137-20121227|2827_1 648 LVSIAVGAGDMVVAGQQLCVVEAMKMQNVILAERNAVVQKVFVDVGATLATDDPIVAFE 706
                 46777888888888888888888888888888888888888888888888888887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (707 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       165  (0.0402243); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                        20  (0.00487567); expected 4.1 (0.001)
Passed Fwd filter:                        14  (0.00341297); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.74u 0.20s 00:00:00.94 Elapsed: 00:00:01.83
# Mc/sec: 509.93
//
Query:       MMETSP1137-20121227|2828_1  [L=610]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.035   11.3   0.0       0.22    8.7   0.0    1.9  2  TIGR00768 rimK_fam: alpha-L-glutamate ligases, RimK family


Domain annotation for each model (and alignments):
>> TIGR00768  rimK_fam: alpha-L-glutamate ligases, RimK family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   0.0   5.4e-05      0.22      86     150 ..     279     345 ..     275     375 .. 0.85
   2 ?   -0.1   0.0     0.025     1e+02     217     253 ..     422     460 ..     414     475 .. 0.71

  Alignments for each domain:
  == domain 1    score: 8.7 bits;  conditional E-value: 5.4e-05
   TIGR00768  86 gdKllssalLakaglplpktlvagseeeakklieeig..fPvvlKpvfGswGklvvlvedkqeaekl 150
                 +dKll + ++  agl    ++   s  +a++++e +     vvlKp +G  G +v +++  +e++  
  MMETSP1137-20121227|2828_1 279 RDKLLMNEAIKDAGLESAMQIAPSSWSAAEAFLELLPrpLRVVLKPRRGQGGLGVLKATSVEEVKYY 345
                 79**********************************966679****************998887654 PP

  == domain 2    score: -0.1 bits;  conditional E-value: 0.025
   TIGR00768 217 eieelaikaakalgld..vagiDllesedkgllvlEvNa 253
                 + +e a k+  a+g +  +a i l   +++g +++EvNa
  MMETSP1137-20121227|2828_1 422 QLAEYAFKVLDAIGWKwgAAHIELKVTPSRGPVLVEVNA 460
                 444556677777766511566889899999********7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (610 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        66  (0.0160897); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.14s 00:00:00.54 Elapsed: 00:00:00.51
# Mc/sec: 1578.69
//
Query:       MMETSP1137-20121227|2830_1  [L=367]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (367 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        74  (0.01804); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.15s 00:00:00.43 Elapsed: 00:00:00.67
# Mc/sec: 722.99
//
Query:       MMETSP1137-20121227|2831_1  [L=150]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      1e-15   55.9   0.0    1.4e-15   55.4   0.0    1.2  1  TIGR03330 SAM_DCase_Bsu: S-adenosylmethionine decarboxylase proenzyme


Domain annotation for each model (and alignments):
>> TIGR03330  SAM_DCase_Bsu: S-adenosylmethionine decarboxylase proenzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.4   0.0   3.4e-19   1.4e-15       2      95 ..      19     113 ..      18     123 .. 0.89

  Alignments for each domain:
  == domain 1    score: 55.4 bits;  conditional E-value: 3.4e-19
   TIGR03330   2 vlGkhllvdlygvdeekledeelieevlleaakaagatlvevafhkfspq..GvsgvvvlaESHisiHTwpEkgyaavDvftCgdtvdpekavell 95 
                 ++G h+l+d+ +   +  +  +++  ++ e ++ ag+t v+++++ +  +  G+++v++l ESH++ H + ++g+ a+DvftCg+  dp+   + +
  MMETSP1137-20121227|2831_1  19 AVGAHVLLDYDNFVVDAAKAGKWLLAAISEEVSLAGVTEVHQKLVLLGTEfpGFTSVILLDESHVTAHCYSDRGLLAIDVFTCGA-HDPSPLANRI 113
                 58*****************************************9998854338*******************************9.6776655555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (150 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        67  (0.0163335); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.20u 0.17s 00:00:00.37 Elapsed: 00:00:00.50
# Mc/sec: 395.97
//
Query:       MMETSP1137-20121227|2832_1  [L=107]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (107 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       133  (0.0324232); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.16s 00:00:00.31 Elapsed: 00:00:00.28
# Mc/sec: 504.39
//
Query:       MMETSP1137-20121227|2833_1  [L=406]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (406 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        87  (0.0212092); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.14s 00:00:00.43 Elapsed: 00:00:00.57
# Mc/sec: 923.92
//
Query:       MMETSP1137-20121227|2834_1  [L=371]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      2e-18   63.5   0.0    2.4e-18   63.2   0.0    1.1  1  TIGR03903 TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
    4.8e-06   24.0   0.0    8.7e-06   23.2   0.0    1.3  1  TIGR03724 arch_bud32: Kae1-associated kinase Bud32


Domain annotation for each model (and alignments):
>> TIGR03903  TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.2   0.0   1.2e-21   2.4e-18      20     186 ..      86     246 ..      72     306 .. 0.81

  Alignments for each domain:
  == domain 1    score: 63.2 bits;  conditional E-value: 1.2e-21
   TIGR03903  20 rlvaRFrReialCarLshPnivaLlDsGeaedgllFavFeyveGrtlrevLaa..dGaLpaaet...grLmlqvLDalaaahdaGvvhRDLkPqnimvsaadveshakvLDFGigaLlpgvedadeatltrttevlGsPaYaaPeqLRgepvtaksDlYaWGLivleCLtGk 186
                    + Fr e+++  +L+hP  ++L+     ++++l  +  + eG tl+ + a   +   p++ t   +r  lqv  ++a  h++ ++hRDLk  ni+++aa++    ++ DFG++   p  +      lt++t   Gs  + aPe LR ep     D++++G++  e Lt  
  MMETSP1137-20121227|2834_1  86 EDQNLFRIELTVWSKLNHPSCIRLIGVCLEGPEYLL-ICPFCEGGTLAGRHAMllKKRSPPIATavlVRQALQVASGMAYLHSQNIMHRDLKSPNILLTAAGDL---RISDFGLAKYAPTEKS----LLTAET---GSYRWMAPEVLRHEPYDRSCDVFSFGMLCWEMLTYS 246
                 45567********************99888887775.67899****976533211444555555011555688889*************************987...588*****99997666....677765...9********************************976 PP

>> TIGR03724  arch_bud32: Kae1-associated kinase Bud32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.2   0.0   4.2e-09   8.7e-06      98     140 ..     157     200 ..     142     207 .. 0.86

  Alignments for each domain:
  == domain 1    score: 23.2 bits;  conditional E-value: 4.2e-09
   TIGR03724  98 evGelvgklHkagivhgDlttsNiivk.ddklyliDfGLgkksk 140
                 +v+  ++ lH+++i+h Dl   Ni+++ +++l + DfGL+k+  
  MMETSP1137-20121227|2834_1 157 QVASGMAYLHSQNIMHRDLKSPNILLTaAGDLRISDFGLAKYAP 200
                 6788899******************9548999********9964 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (371 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        69  (0.0168211); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.29u 0.17s 00:00:00.46 Elapsed: 00:00:00.66
# Mc/sec: 741.94
//
Query:       MMETSP1137-20121227|2836_1  [L=30]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (30 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        23  (0.00560702); expected 82.0 (0.02)
Passed bias filter:                       23  (0.00560702); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.13s 00:00:00.24 Elapsed: 00:00:00.23
# Mc/sec: 172.16
//
Query:       MMETSP1137-20121227|2837_1  [L=192]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.5e-08   30.7   3.0    5.1e-08   30.2   2.0    1.1  1  TIGR02092 glgD: glucose-1-phosphate adenylyltransferase, GlgD subunit
    2.3e-07   28.1   2.0    3.1e-07   27.6   1.4    1.2  1  TIGR02091 glgC: glucose-1-phosphate adenylyltransferase
    5.2e-05   20.1   1.1     0.0001   19.1   0.8    1.4  1  TIGR01173 glmU: UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase
    8.3e-05   19.8   1.3    0.00032   17.9   0.7    1.7  2  TIGR01852 lipid_A_lpxA: acyl-[acyl-carrier-protein]-UDP-N-acetylglucosamine O-acyltransferase
    0.00026   17.9   2.5    0.00046   17.1   1.5    1.5  1  TIGR01853 lipid_A_lpxD: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
    0.00037   17.3   0.6     0.0026   14.5   0.3    1.8  2  TIGR01208 rmlA_long: glucose-1-phosphate thymidylyltransferase
     0.0052   14.2   6.0      0.084   10.3   3.9    2.0  2  TIGR03570 NeuD_NnaD: sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family
     0.0056   14.4   0.1      0.019   12.7   0.1    1.7  1  TIGR03308 phn_thr-fam: phosphonate metabolim protein, transferase hexapeptide repeat family
     0.0081   13.3   1.7       0.31    8.1   0.2    2.1  2  TIGR03991 alt_bact_glmU: UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase
  ------ inclusion threshold ------
      0.012   12.3   2.2      0.031   11.0   1.0    1.5  1  TIGR03992 Arch_glmU: UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase


Domain annotation for each model (and alignments):
>> TIGR02092  glgD: glucose-1-phosphate adenylyltransferase, GlgD subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.2   2.0   1.2e-10   5.1e-08     285     357 ..       4      78 ..       2      81 .. 0.92

  Alignments for each domain:
  == domain 1    score: 30.2 bits;  conditional E-value: 1.2e-10
   TIGR02092 285 tsevenSlvanGciieGkve..nsilsRgvlvekdaliknsiilqeteigegaklekviiDKdvvieeneklagt 357
                  s++++S v+  c i  +v+  n++l  +v+v++ +++ n ++  ++eigega l+ + + K+v ie + +l+g 
  MMETSP1137-20121227|2837_1   4 RSTIKKSAVGPHCRIGANVKisNCVLMDHVVVHDKVTMSNVVVCSDAEIGEGASLKDAQVGKAVSIEAGAELKGE 78 
                 6999***********7755433*************************************************9996 PP

>> TIGR02091  glgC: glucose-1-phosphate adenylyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.6   1.4   7.6e-10   3.1e-07     293     361 ..       5      74 ..       1      77 [. 0.76

  Alignments for each domain:
  == domain 1    score: 27.6 bits;  conditional E-value: 7.6e-10
   TIGR02091 293 akvkdslvaegcvisg.atvenSvlgervriesesevedsvvlgevkigenakikkaiidknvrigegvk 361
                 +++k+s v+  c i + ++++n vl ++v++++++++++ vv ++++ige+a++k a + k v+i  g++
  MMETSP1137-20121227|2837_1   5 STIKKSAVGPHCRIGAnVKISNCVLMDHVVVHDKVTMSNVVVCSDAEIGEGASLKDAQVGKAVSIEAGAE 74 
                 3478888888888865477888888888888888888888888888888888888888888888877766 PP

>> TIGR01173  glmU: UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.8   2.5e-07    0.0001     280     356 ..       9      84 ..       3      88 .. 0.85

  Alignments for each domain:
  == domain 1    score: 19.1 bits;  conditional E-value: 2.5e-07
   TIGR01173 280 kvkigedvviGagsvikdsaikenakikaysvlekseigegasvGPfarlRpesvlkeeakiGnFvEvKkaklgegs 356
                 k  +g +++iGa+++i+++++ ++++++++ ++++  + ++a++G  a l++ +++++ + i +  E+K  ++ e+s
  MMETSP1137-20121227|2837_1   9 KSAVGPHCRIGANVKISNCVLMDHVVVHDKVTMSNVVVCSDAEIGEGASLKD-AQVGKAVSIEAGAELKGEAIVEDS 84 
                 5678999999*999*****999999999999999999999999999999975.667777999888888887777665 PP

>> TIGR01852  lipid_A_lpxA: acyl-[acyl-carrier-protein]-UDP-N-acetylglucosamine O-acyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.7   7.7e-07   0.00032      16      64 ..       9      55 ..       2      72 .. 0.80
   2 ?    3.4   0.1     0.021       8.6       6      44 ..      45      82 ..      42      89 .. 0.75

  Alignments for each domain:
  == domain 1    score: 17.9 bits;  conditional E-value: 7.7e-07
   TIGR01852 16 dveigpfavvgkevkigegvelkshvviegattiGentkvfpgAviGee 64
                +  +gp++ +g++vki+ +++l++hvv++ ++t+ +n  v++ A iGe 
  MMETSP1137-20121227|2837_1  9 KSAVGPHCRIGANVKIS-NCVLMDHVVVHDKVTM-SNVVVCSDAEIGEG 55
                45799999999999996.6889999999999998.57889999999975 PP

  == domain 2    score: 3.4 bits;  conditional E-value: 0.021
   TIGR01852  6 iieegaelgedveigpfavvgkevkigegvelkshvvie 44
                ++  +ae+ge+ ++   a vgk v+i++g+elk ++++e
  MMETSP1137-20121227|2837_1 45 VVCSDAEIGEGASLKD-AQVGKAVSIEAGAELKGEAIVE 82
                6677788888888776.7788888888888888888776 PP

>> TIGR01853  lipid_A_lpxD: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   1.5   1.1e-06   0.00046     109     171 ..       8      73 ..       1      79 [. 0.62

  Alignments for each domain:
  == domain 1    score: 17.1 bits;  conditional E-value: 1.1e-06
   TIGR01853 109 eeveigpnvviganveiGenvkIgpgvvigd.....dvkigdesviyanvviyeevklgknviiqaga 171
                 +++++gp   iganv+i +n++++ +vv+ d     +v++ ++++i  ++++  ++++gk v i+aga
  MMETSP1137-20121227|2837_1   8 KKSAVGPHCRIGANVKI-SNCVLMDHVVVHDkvtmsNVVVCSDAEIGEGASLK-DAQVGKAVSIEAGA 73 
                 45667777777777777.46666777777661111134445555666666665.77888888888887 PP

>> TIGR01208  rmlA_long: glucose-1-phosphate thymidylyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.3   6.3e-06    0.0026     275     335 ..       2      62 ..       1      68 [. 0.79
   2 !   10.2   0.1   0.00013     0.052     254     305 ..      32      84 ..      29      98 .. 0.85

  Alignments for each domain:
  == domain 1    score: 14.5 bits;  conditional E-value: 6.3e-06
   TIGR01208 275 GedviiensyigpytsigegvvikdaeveksivldesviegvekriedsviGkkvkikknr 335
                 G   +i++s +gp+  ig +v+i ++ + + +v+++ v +++    +d+ iG+ +++k+++
  MMETSP1137-20121227|2837_1   2 GARSTIKKSAVGPHCRIGANVKISNCVLMDHVVVHDKVTMSNVVVCSDAEIGEGASLKDAQ 62 
                 778899*******************998766665555555555589999999999988776 PP

  == domain 2    score: 10.2 bits;  conditional E-value: 0.00013
   TIGR01208 254 rvkveegakivnsvirGPaviGedviiensyigpytsigegvvik.daeveks 305
                 +v+v+++  + n v+   a iGe + ++++ +g+ +si+ g+ +k +a ve+s
  MMETSP1137-20121227|2837_1  32 HVVVHDKVTMSNVVVCSDAEIGEGASLKDAQVGKAVSIEAGAELKgEAIVEDS 84 
                 6889999999999****************************999833445555 PP

>> TIGR03570  NeuD_NnaD: sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.3   3.9   0.00021     0.084     111     183 ..       9      72 ..       3      73 .. 0.57
   2 ?    4.6   0.0     0.011       4.6     135     158 ..      60      83 ..      58      85 .. 0.91

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 0.00021
   TIGR03570 111 gavinadvrigdnviintgavveHdceigdfvhiapgatlsGgvkigegvfiGagAtviqgvtIgkgavvGaG 183
                 ++ + + +rig+nv i + ++++H +++ d v+++ +++++ +++igeg+ +   A+v + v+I+      aG
  MMETSP1137-20121227|2837_1   9 KSAVGPHCRIGANVKISNCVLMDH-VVVHDKVTMS-NVVVCSDAEIGEGASL-KDAQVGKAVSIE------AG 72 
                 556777777777777766666665.5566666654.5556666666666554.344444444444......44 PP

  == domain 2    score: 4.6 bits;  conditional E-value: 0.011
   TIGR03570 135 dceigdfvhiapgatlsGgvkige 158
                 d+++g+ v+i +ga l G++ +++
  MMETSP1137-20121227|2837_1  60 DAQVGKAVSIEAGAELKGEAIVED 83 
                 899****************99987 PP

>> TIGR03308  phn_thr-fam: phosphonate metabolim protein, transferase hexapeptide repeat family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.7   0.1   4.5e-05     0.019       5      65 ..      12      72 ..       1      79 [. 0.70

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 4.5e-05
   TIGR03308  5 lslePtihesaelkesklGrytevgertrleevalddysyvereadiayttiGkfvsiaas 65
                ++++ +i +++++ ++ l  ++ v +++ +++v +   + + + a ++ +++Gk vsi a 
  MMETSP1137-20121227|2837_1 12 VGPHCRIGANVKISNCVLMDHVVVHDKVTMSNVVVCSDAEIGEGASLKDAQVGKAVSIEAG 72
                3445556677777777777777777777777777777777777777788888887777665 PP

>> TIGR03991  alt_bact_glmU: UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.7   0.0    0.0079       3.2     232     257 ..       5      31 ..       1      37 [. 0.74
   2 !    8.1   0.2   0.00076      0.31     176     218 ..      39      83 ..      31      85 .. 0.79

  Alignments for each domain:
  == domain 1    score: 4.7 bits;  conditional E-value: 0.0079
   TIGR03991 232 arikggtsiGttckiGGEve..asvied 257
                 + i +++++G+ c+iG  v+  ++v+ d
  MMETSP1137-20121227|2837_1   5 STI-KKSAVGPHCRIGANVKisNCVLMD 31 
                 555.6789********987533777766 PP

  == domain 2    score: 8.1 bits;  conditional E-value: 0.00076
   TIGR03991 176 vkekavfieegakvkegavl.dasdG.pivigkdakveefsfleg 218
                 v  ++v++ ++a++ ega+l da+ G ++ i+++a+++  +++e+
  MMETSP1137-20121227|2837_1  39 VTMSNVVVCSDAEIGEGASLkDAQVGkAVSIEAGAELKGEAIVED 83 
                 456899999999999999997899994478999999999888875 PP

>> TIGR03992  Arch_glmU: UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   1.0   7.5e-05     0.031     284     332 ..       9      57 ..       1      67 [. 0.86

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 7.5e-05
   TIGR03992 284 atvigedvkvgnaveiKnsiimeetkipHlsYvGDSvigedvNlgagtk 332
                 ++++g ++++g+ v+i n ++m++  +     + + v+++d+ +g g+ 
  MMETSP1137-20121227|2837_1   9 KSAVGPHCRIGANVKISNCVLMDHVVVHDKVTMSNVVVCSDAEIGEGAS 57 
                 468999*******************999999999999999999998875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (192 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       108  (0.0263286); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                        19  (0.00463189); expected 4.1 (0.001)
Passed Fwd filter:                        10  (0.00243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.27u 0.16s 00:00:00.43 Elapsed: 00:00:00.41
# Mc/sec: 618.10
//
Query:       MMETSP1137-20121227|2838_1  [L=267]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (267 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        86  (0.0209654); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.16s 00:00:00.37 Elapsed: 00:00:00.37
# Mc/sec: 952.46
//
Query:       MMETSP1137-20121227|2839_1  [L=378]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (378 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       132  (0.0321794); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.16s 00:00:00.44 Elapsed: 00:00:00.39
# Mc/sec: 1279.28
//
Query:       MMETSP1137-20121227|2840_1  [L=486]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0061   13.9   0.0      0.012   13.0   0.0    1.4  1  TIGR03420 DnaA_homol_Hda: DnaA regulatory inactivator Hda


Domain annotation for each model (and alignments):
>> TIGR03420  DnaA_homol_Hda: DnaA regulatory inactivator Hda
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   0.0   2.9e-06     0.012      23      62 ..     227     266 ..     203     291 .. 0.71

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 2.9e-06
   TIGR03420  23 aellaalrelaeakaerllylwGesgsGksHLLqAacaaa 62 
                 + + +++++++ea++++ l + G+ g Gk+H + Aa ++ 
  MMETSP1137-20121227|2840_1 227 SDVSEQISSYLEANTGQYLLILGPRGAGKTHAVTAALNNR 266
                 33445566669********************999988754 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (486 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       189  (0.0460751); expected 82.0 (0.02)
Passed bias filter:                      127  (0.0309605); expected 82.0 (0.02)
Passed Vit filter:                        31  (0.00755729); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.11s 00:00:00.49 Elapsed: 00:00:00.55
# Mc/sec: 1166.30
//
Query:       MMETSP1137-20121227|2841_1  [L=281]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (281 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       108  (0.0263286); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.15s 00:00:00.37 Elapsed: 00:00:00.45
# Mc/sec: 824.20
//
Query:       MMETSP1137-20121227|2842_1  [L=495]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.4e-91  303.0  17.2    9.4e-91  302.7  11.9    1.0  1  TIGR00879 SP: MFS transporter, sugar porter (SP) family
    3.1e-14   50.4  11.2    5.4e-14   49.7   7.8    1.3  1  TIGR00898 2A0119: cation transport protein
    7.7e-13   45.9   8.7    7.7e-13   45.9   6.0    3.1  3  TIGR00895 2A0115: MFS transporter, aromatic acid:H+ symporter (AAHS) family
    4.7e-11   40.1  10.6    6.1e-08   29.8   0.5    2.2  2  TIGR00887 2A0109: phosphate:H+ symporter
    2.6e-07   27.9  17.2    6.4e-05   20.0  11.9    2.4  1  TIGR00883 2A0106: MFS transporter, metabolite:H+ symporter (MHS) family protein
      4e-07   28.1  31.9    5.9e-05   21.0   7.0    3.9  3  TIGR00880 2_A_01_02: multidrug resistance protein
      8e-05   20.0  12.8     0.0095   13.2   1.4    3.6  3  TIGR00710 efflux_Bcr_CflA: drug resistance transporter, Bcr/CflA subfamily


Domain annotation for each model (and alignments):
>> TIGR00879  SP: MFS transporter, sugar porter (SP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  302.7  11.9   1.6e-93   9.4e-91      39     510 .]      13     490 ..       6     490 .. 0.89

  Alignments for each domain:
  == domain 1    score: 302.7 bits;  conditional E-value: 1.6e-93
   TIGR00879  39 sellltpallg.snyvfvallsllaalagllfgYdtavisaalallkfefkftsnlsdasssqwglvvsillvGgligalfagylsdrfgrkkslliiallfvigailsllaatalsvevlivgRvllGigvGiasalvPlYisEiApkalRgalvslyqlaitfGilvaaifg.sgklvanntlgwriplglqlipalllllglfflPesprwLvekgke.........eeArkslarlrgeksedkelleelelikikreiekesvnksgaelfslkkriirrlllgvvlqafqQltGiNaimyYsptifenlGvstdtallvsiivgavnvaaTfvaiflvdrfGRrtllliGaagmaiclfvlgilgvssvtg.....sskaasivaivfillfiaayalgigpvvwvlvsEifplsvRpkgiaiavaanwlanfiiallfpimlen......sigqgvvFiffgalnvlalilvyfflpetkgltleei 510
                 s+ ll+p++    + +fv+l  ++ alag+lfgYd +  s+a+++++    +        s+ ++l++s+ l+G+++g++ + +l+  +gr++ +l +a l+v+g++ls+++ ++  +  + vgR++ G+g+  +   +P+YisE++p ++Rg+lvs  + +i+fGi+ ++ ++   + v +++ ++r + ++ l++    ++g+f +P sprwL+ +  +         ++A k+l+r r + s +++++e   + +i++++ +   ++s+++l++     +r+l+ g+ l   qQltG  +++yY  +ife +G+ +  + ++++i+ga +++aT++a+  vd+fGRr+ll++G+ +m++ l+vlg+ +++s+ +            v++v +++++ +y++g+gp++w+++sE+fpl++R+ + + av++n+ +n++ +++   + ++      ++gq + F ++g+l+vl+l++v+ f+petkg++leei
  MMETSP1137-20121227|2842_1  13 SAMLLPPMGRAwAQRWFVYLAFFFPALAGFLFGYDIGAASGAVNSVNELVGLS-------SIMKSLLTSSSLIGATVGSIAVFWLGEPLGRRREILTGATLYVLGSALSAISPNGIILYSALVGRAIYGLGIAFSMHAAPVYISEMSPSDIRGQLVSAKEGFIVFGIMAGFSVSaACQAVMSKDAAFRGIWAVPLLIGTGIFVGMFSMPPSPRWLLLQASRqlasankyrDQAVKALQRFRRGASDAQIEAE---VAEIEQSLGT-DFETSWKDLLDA----RRALVAGLGLISLQQLTGQPSVLYYQQQIFEAAGFGS-FSKYATVIIGAAKLIATLFAVRYVDNFGRRPLLFVGTTMMLVSLVVLGTGFFFSTREgdsvtLPPGWPPVIVVTLVAYVCGYQVGFGPIAWLIISEVFPLKTRTRALSAAVTVNFGFNLLMTFTLQLLQDAfdsispGKGQSYLFYLYGVLCVLSLVFVWAFVPETKGKSLEEI 490
                 555666665542578********************************999988.......9******************************************************9999*******************************************************95566668***********9999999***************9775431111111114567777777766666666666...5556666666.445558888885....689**********************************.789*********************************************8888877778776666667789****************************************************999998888******************************************8 PP

>> TIGR00898  2A0119: cation transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.7   7.8   9.2e-17   5.4e-14     119     505 ..      60     489 ..      43     490 .. 0.72

  Alignments for each domain:
  == domain 1    score: 49.7 bits;  conditional E-value: 9.2e-17
   TIGR00898 119 dlvcedawkvkltqsvvfvGvLlGslvlGqlsDrfGRkkvLllstlvtavsgvltafspn...ytvflvlrlLvGvgiagivvvalvLitEflpkkaRaivgilievffalGllllallAYlird.......WRwLlllvslPlvlflvlvwfvpESpRwlisq.........grieeAlkiLkrvAkingk.klpaevlslslekelsekkakkaslldllrtpklrkttlllmllwftt...afsYygL.vldleelgg.niYldllisglvelpaklitlllidrLgRrktmaaslllagvallll..llvpeelk..........llrtalavvgkag.issaFq.maylytaELYPTvvRnlgvgvcstmarvG.siisPflvyvlge.vs.......lflplvifgvlallaglls.llLPetkgvaLpe 505
                 +lv  ++ ++ l++s+  +G  +Gs+ +  l   +GR++ +l       + + l+a+spn   ++  lv r + G+gia ++ +a v i E+ p+  R   +   e f  +G++    +  +++         R + ++  l    ++v ++ +p SpRwl++q         + +++A+k+L+r ++  +  ++ aev +++  + l ++   ++s +dll  + ++   l l+ l   t   +++Yy   +++  ++g  + Y   +i g++ l+a l ++  +d++gRr  + + + ++ v+l++l   +  + +             ++++++v++++     F  +a l+ +E++P  +R  +++++ t+  +G  ++  f +++l++ ++       ++  + ++gvl++l  +++  + Petkg+ L+e
  MMETSP1137-20121227|2842_1  60 ELVGLSSIMKSLLTSSSLIGATVGSIAVFWLGEPLGRRREILTGATLYVLGSALSAISPNgiiLYSALVGRAIYGLGIAFSMHAAPVYISEMSPSDIRGQLVSAKEGFIVFGIMAGFSVSAACQAvmskdaaFRGIWAVPLLIGTGIFVGMFSMPPSPRWLLLQasrqlasanKYRDQAVKALQRFRRGASDaQIEAEVAEIE--QSLGTD--FETSWKDLLDARRALVAGLGLISLQQLTgqpSVLYYQQqIFEAAGFGSfSKYA-TVIIGAAKLIATLFAVRYVDNFGRRPLLFVGTTMMLVSLVVLgtGFFFSTREgdsvtlppgwPPVIVVTLVAYVCgYQVGFGpIAWLIISEVFPLKTRTRALSAAVTVN-FGfNLLMTFTLQLLQDaFDsispgkgQSYLFYLYGVLCVLSLVFVwAFVPETKGKSLEE 489
                 67777899****************************998777777777778899*****9554556799***********9999****************999988888888876554444444444454888888777666666789999**********987322222221234567777777777655546666666664..656665..589**********9999998888777663346887765155666665414565.677899*******************9887655555544444322444444456889999997334555555655416677853899********999999999887764.55244555555544431331111111556689*******9988773689******9987 PP

>> TIGR00895  2A0115: MFS transporter, aromatic acid:H+ symporter (AAHS) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.9   6.0   1.3e-15   7.7e-13      16     220 ..      31     240 ..      22     269 .. 0.82
   2 ?    2.5   0.5     0.021        12      67      98 ..     331     364 ..     311     373 .. 0.57
   3 !    6.4   0.6    0.0013      0.78     124     195 ..     404     482 ..     388     489 .. 0.79

  Alignments for each domain:
  == domain 1    score: 45.9 bits;  conditional E-value: 1.3e-15
   TIGR00895  16 irvlilsflivlvdGldllvlgfaapalskewgldkvelGfllsagLiGmvlGallfgplaDrigRkrvllvsillfsvftlasalatnvtqL...lvlRflaglGlGgllpnliaLvsEyapkrfratvv....glvavGyaiGaavggllaallipafgWrslflvggiiplllllllikvLpEsikflvekkpekvrkilnaiapslqa 220
                   ++ + +l+ ++ G+d+ +++ a +++ +  gl+++    l s++LiG+ +G++ + +l   +gR+r +l +  l  +++++sa++ n + L   lv R++ glG+   + ++ + +sE +p+ +r+++v    g+++ G   G +v+++  a++  + + r +++v  +i    + + ++ +p s ++l  + +++ +   n+  +++++
  MMETSP1137-20121227|2842_1  31 YLAFFFPALAGFLFGYDIGAASGAVNSVNELVGLSSIMKSLLTSSSLIGATVGSIAVFWLGEPLGRRREILTGATLYVLGSALSAISPNGIILysaLVGRAIYGLGIAFSMHAAPVYISEMSPSDIRGQLVsakeGFIVFGIMAGFSVSAACQAVMSKDAAFRGIWAVPLLIGTG-IFVGMFSMPPSPRWLLLQASRQ-LASANKYRDQAVK 240
                 55677778889999*****************************************************99999999999*********996655222789********************************33333678888999999999999999999988888887544443.566788999999**99995555.4445555555443 PP

  == domain 2    score: 2.5 bits;  conditional E-value: 0.021
   TIGR00895  67 lGallfgplaDrigRkrvllvs..illfsvftla 98 
                 +  l+     D +gR+++l v+  ++l+s++ l+
  MMETSP1137-20121227|2842_1 331 IATLFAVRYVDNFGRRPLLFVGttMMLVSLVVLG 364
                 3344444555666666665553113444444444 PP

  == domain 3    score: 6.4 bits;  conditional E-value: 0.0013
   TIGR00895 124 pnliaLvsEyapkrfratvvg...lvavGyaiGaavggll.aa...llipafgWrslflvggiiplllllllikvLpEs 195
                 p++  ++sE  p + r+ +++   +v  G+++ ++    l       + p  g   lf++ g++ +l l++++ ++pE 
  MMETSP1137-20121227|2842_1 404 PIAWLIISEVFPLKTRTRALSaavTVNFGFNLLMTFTLQLlQDafdSISPGKGQSYLFYLYGVLCVLSLVFVWAFVPET 482
                 78888999****9999988873335678999988776544132122467889999***********************6 PP

>> TIGR00887  2A0109: phosphate:H+ symporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   2.3   3.5e-06     0.002      56     174 ..      67     182 ..      57     195 .. 0.84
   2 !   29.8   0.5     1e-10   6.1e-08     342     501 ..     323     492 ..     223     493 .. 0.81

  Alignments for each domain:
  == domain 1    score: 14.9 bits;  conditional E-value: 3.5e-06
   TIGR00887  56 svsalvkasasvgtllgqllfglladllgrkrvygleliivivatvasalsakssalsvvatllfyrlllgvGiggdyplsaiitsefatkkrRGaliaavFamqgfGilagaivaliv 174
                  +++l++ s+ +g  +g++   +l++ lgr+r   +   + ++ + +sa+s+      ++   l+ r + g+Gi      + + +se++    RG l++a   +  fGi+ag  v  + 
  MMETSP1137-20121227|2842_1  67 IMKSLLTSSSLIGATVGSIAVFWLGEPLGRRREILTGATLYVLGSALSAISP---NGIILYSALVGRAIYGLGIAFSMHAAPVYISEMSPSDIRGQLVSAKEGFIVFGIMAGFSVSAAC 182
                 567899************************9977666777777776666655...45566677788*********9999999****************************998776655 PP

  == domain 2    score: 29.8 bits;  conditional E-value: 1e-10
   TIGR00887 342 iivlagtvPGYWvtvflvdklGRkaiqlmGFviltvlfvvlaiaynelsek...............gllalyvlaqfFanFGPnattFivPaevFPaRlRstahGisaaaG.kvG.aiiaqlalslladkgaakkgkptgiwvenvleifalvmllGilf.tlLiPetkgksleelsr 501
                 +i+ a+++    ++v  vd++GR+++ + G +++ v +vvl++ +   +++                 l+ yv + +   FGP a  +++ +evFP + R+ a  +saa+    G  ++ +++l+ll+d  ++     +g + + ++ ++ ++  l ++f    +Petkgkslee+++
  MMETSP1137-20121227|2842_1 323 VIIGAAKLIATLFAVRYVDNFGRRPLLFVGTTMMLVSLVVLGTGFFFSTREgdsvtlppgwppvivVTLVAYV-CGYQVGFGPIA--WLIISEVFPLKTRTRA--LSAAVTvNFGfNLLMTFTLQLLQDAFDSI---SPGKGQSYLFYLYGVLCVLSLVFvWAFVPETKGKSLEEIQQ 492
                 55556666667799****************************9987777667899999999765443344443.5567899*987..56669****8888655..77776524563688889999998865555...455777777778876666655541579***********985 PP

>> TIGR00883  2A0106: MFS transporter, metabolite:H+ symporter (MHS) family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0  11.9   1.1e-07   6.4e-05      49     362 ..      81     429 ..      64     442 .. 0.71

  Alignments for each domain:
  == domain 1    score: 20.0 bits;  conditional E-value: 1.1e-07
   TIGR00883  49 plGaivfGalgDrlGRkktLvvtlllMgigtvligllPsyatiGiwApilLlllrliQGlslGgEyggaalllaEsApegkrglygsfqqvgasvglllaalvvlllsallseealleWgWRiPFlvsvvlvligLyl....Rlk.leEtpvfekekekkkkear...........................kkriplaevltkkrkelllvlglviatsvlfYllttylasYlkktaklglsaesallvlllalillllviplsgllsdriGrrkvlilltvlaallavpl....lsallesssil.......lvlllllllalivamytgvmaa.llaelfptevRytgvslaynl 362
                  +G+i + +lg  lGR++ ++ + +l  +g++l ++ P+    Gi+     l+ r i Gl++   + +a ++++E++p++ rg + s+++     g++ +  v ++ +a++s++a ++  W +P l++  + +  + +    R   l+ + + + +++ ++++ +                             +++ + +l + r++l+++lgl+  ++++      y ++ + ++a++    + + ++++++++  l+ + ++  + d +Grr++l + t+++++  v l    ++   e +s++       +++++l++  + +++ +g++a  +++e+fp + R++++s a  +
  MMETSP1137-20121227|2842_1  81 TVGSIAVFWLGEPLGRRREILTGATLYVLGSALSAISPN----GIILYSA-LVGRAIYGLGIAFSMHAAPVYISEMSPSDIRGQLVSAKEGFIVFGIMAGFSVSAACQAVMSKDAAFRGIWAVPLLIGTGIFVGMFSMppspRWLlLQASRQLASANKYRDQAVKalqrfrrgasdaqieaevaeieqslgtDFETSWKDLLDA-RRALVAGLGLISLQQLTGQPSVLYYQQQIFEAAGF---GSFSKYATVIIGAAKLIATLFAVRYVDNFGRRPLLFVGTTMMLVSLVVLgtgfFFSTREGDSVTlppgwppVIVVTLVAYVCGYQVGFGPIAWlIISEVFPLKTRTRALSAAVTV 429
                 5899999999*************************9997....3332222.579************************************************************************998777766655333333214444444444444443333556667999999888877755544433333333333333.33666666666666666555555655555555552...3344455566666666667777789********9998888877665543222144444333443222222267788888888899999999852689*******99999887655 PP

>> TIGR00880  2_A_01_02: multidrug resistance protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.3      0.75   4.4e+02      88     111 ..      64      87 ..      25      93 .. 0.65
   2 !   21.0   7.0     1e-07   5.9e-05      18     139 ..      87     214 ..      70     216 .. 0.74
   3 !   13.7   6.3   1.9e-05     0.011       6     141 .]     324     482 ..     320     482 .. 0.74

  Alignments for each domain:
  == domain 1    score: -1.2 bits;  conditional E-value: 0.75
   TIGR00880  88 algllsagialgpilGpllGavla 111
                   +++ + ++ + ++G+ +G++ +
  MMETSP1137-20121227|2842_1  64 LSSIMKSLLTSSSLIGATVGSIAV 87 
                 456777777888888888888765 PP

  == domain 2    score: 21.0 bits;  conditional E-value: 1e-07
   TIGR00880  18 sglltdrvGrkpvllvglfifvlsqllfalssnitvli...iarilqGfgaaaalvagaaliadiikeeersvalgllsagialgpilGpllGavlaqalgwralf...lilallallafilllfllp 139
                 +  l + +Gr+  +l g  ++vl+++l+a+s n  +l+   + r++ G+g a+++ a+  +i+++++++ r++ ++    +i++g++ G  + a+  +++++ a f   +++ ll +  +++ +f +p
  MMETSP1137-20121227|2842_1  87 VFWLGEPLGRRREILTGATLYVLGSALSAISPNGIILYsalVGRAIYGLGIAFSMHAAPVYISEMSPSDIRGQLVSAKEGFIVFGIMAGFSVSAACQAVMSKDAAFrgiWAVPLLIGTGIFVGMFSMP 214
                 44455679***********************998888544489****************************999987777777777777777777666666666663334444444444555555555 PP

  == domain 3    score: 13.7 bits;  conditional E-value: 1.9e-05
   TIGR00880   6 gyAlgqlvvsplsglltdrvGrkpvllvglfifvlsqllfals..................snitvliiarilqGfgaaaal.vagaaliadiikeeersvalgllsagialgpilGpllGavla........qalgwralflilallallafilllfllpeT 141
                 +++++ l++ +++   +d +Gr+p+l+vg+ ++++s +++ ++                      v+++  +   +g+ + + +++  +i+++++ ++r++al+ ++++ ++g+ l   ++  l         +  g ++lf++ ++l++l+++ ++ ++peT
  MMETSP1137-20121227|2842_1 324 IIGAAKLIATLFAVRYVDNFGRRPLLFVGTTMMLVSLVVLGTGfffstregdsvtlppgwpP---VIVVTLVAYVCGYQVGFgPIAWLIISEVFPLKTRTRALSAAVTV-NFGFNLLMTFTLQLLqdafdsisPGKGQSYLFYLYGVLCVLSLVFVWAFVPET 482
                 78999**********************************99999999****99999885433...3333333333444443303334567899**********998875.34433333333332223333355667999**********************98 PP

>> TIGR00710  efflux_Bcr_CflA: drug resistance transporter, Bcr/CflA subfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   1.4   1.6e-05    0.0095      39      94 ..      66     121 ..      52     143 .. 0.79
   2 !    8.9   0.2   0.00033      0.19      55      86 ..     331     362 ..     299     367 .. 0.83
   3 ?    3.8   0.0     0.012       6.9     287     350 ..     406     470 ..     394     493 .. 0.71

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 1.6e-05
   TIGR00710  39 asavqltltlyllglavgqLllGplsDsyGRkpvlLlgllvfalsslvlalsenie 94 
                 + + +l  ++ l+g +vg + +  l+  +GR+  +L g ++++l+s  +a+s+n  
  MMETSP1137-20121227|2842_1  66 SIMKSLLTSSSLIGATVGSIAVFWLGEPLGRRREILTGATLYVLGSALSAISPNGI 121
                 4445555678899************************************9999854 PP

  == domain 2    score: 8.9 bits;  conditional E-value: 0.00033
   TIGR00710  55 vgqLllGplsDsyGRkpvlLlgllvfalsslv 86 
                 ++ L+  +  D +GR+p l +g+++  +s +v
  MMETSP1137-20121227|2842_1 331 IATLFAVRYVDNFGRRPLLFVGTTMMLVSLVV 362
                 5778888999**************99988665 PP

  == domain 3    score: 3.8 bits;  conditional E-value: 0.012
   TIGR00710 287 vllvltallglvslalviavailvgigvslvlsialalaLeefphva.Gtasallgtlrlvlgai 350
                 ++l+++++  l+  + +++ a+ v  g  l+++ +l+l  + f+ ++ G+ ++ l+ l+ vl+ +
  MMETSP1137-20121227|2842_1 406 AWLIISEVFPLKTRTRALSAAVTVNFGFNLLMTFTLQLLQDAFDSISpGKGQSYLFYLYGVLCVL 470
                 57777777777777777777777777777777777777777777764477777777777777654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (495 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       208  (0.050707); expected 82.0 (0.02)
Passed bias filter:                      120  (0.029254); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.52u 0.16s 00:00:00.68 Elapsed: 00:00:00.64
# Mc/sec: 1020.85
//
Query:       MMETSP1137-20121227|2844_1  [L=194]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.5e-50  169.3   0.0    1.8e-50  169.0   0.0    1.0  1  TIGR01383 not_thiJ: DJ-1 family protein
    1.9e-15   54.7   0.0    2.2e-15   54.5   0.0    1.0  1  TIGR01382 PfpI: intracellular protease, PfpI family


Domain annotation for each model (and alignments):
>> TIGR01383  not_thiJ: DJ-1 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  169.0   0.0   8.6e-54   1.8e-50       2     175 ..       4     185 ..       3     189 .. 0.91

  Alignments for each domain:
  == domain 1    score: 169.0 bits;  conditional E-value: 8.6e-54
   TIGR01383   2 vlillaeGaEevEavivvdvLrRagikvtvavvsledklavkgsrgvklladksled..veeeefDvivLpGGlpGaenlkdsklleellkkqeskgklvAAICaaPivlla..aevllgkkkatcypslkekllne.....eysvekavvvdgkliTsrGpgtaieFalelvelLaGkevae 175
                 +l+++a+G+Ee+Ea ++v+vLrRag +vt+a+v++ + + v+++r+  l++d+ +e   + ++++D+i LpGG+pGa+nl+ s+ l e l++q++++k ++AICaaP+v++a  a  ll  ++atc+p + ekl+++     ++ ++ +v+ d+  +TsrGpgtaieFal++vel++G evae
  MMETSP1137-20121227|2844_1   4 ALVPIAPGSEELEATAIVNVLRRAGWSVTLASVGVPGMDPVSCARNQLLVPDAAIEApgILDSDYDAILLPGGMPGASNLAASSPLLERLRRQAAEKKWYGAICAAPAVVFAgaAADLLP-QQATCHPAFIEKLEAAgcdanRFLDRVVVDDDRGCVTSRGPGTAIEFALKVVELVQGSEVAE 185
                 589****************************************************96448899*********************************************997522555666.7************988776645557778888999**************************98 PP

>> TIGR01382  PfpI: intracellular protease, PfpI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.5   0.0   1.1e-18   2.2e-15       8     168 ..      10     178 ..       4     179 .. 0.86

  Alignments for each domain:
  == domain 1    score: 54.5 bits;  conditional E-value: 1.1e-18
   TIGR01382   8 defedeEllePlkalkeaGheVtvvs.gkekgeivkekkgakvtvdatld..dvdaeeydalvipGGra.peylrldekvielvrefaekgKpvaaIChgpqlL...isAdvlrGkkltaypaiaedvknAGaeyvdirevvvvdan..lvtakvpadlpafvseilkll 168
                  + e+ E +  +++l++aG +Vt++s g    + v   +++ +  da ++  ++ +++yda+++pGG   + +l   + + e  r  a + K   aIC +p +    ++Ad+l  +++t+ pa +e +  AG +  +  + vvvd++   vt++ p+ +  f  ++++l+
  MMETSP1137-20121227|2844_1  10 PGSEELEATAIVNVLRRAGWSVTLASvGVPGMDPVSCARNQLLVPDAAIEapGILDSDYDAILLPGGMPgASNLAASSPLLERLRRQAAEKKWYGAICAAPAVVfagAAADLL-PQQATCHPAFIEKLEAAGCDANRFLDRVVVDDDrgCVTSRGPGTAIEFALKVVELV 178
                 567888999999**************988889999967777777788877447***************989******99999999999999**********998333345655.699****************9999887777777668*****************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (194 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       102  (0.0248659); expected 82.0 (0.02)
Passed bias filter:                       99  (0.0241346); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.19u 0.14s 00:00:00.33 Elapsed: 00:00:00.32
# Mc/sec: 800.18
//
Query:       MMETSP1137-20121227|2846_1  [L=387]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (387 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        58  (0.0141394); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.20s 00:00:00.48 Elapsed: 00:00:00.43
# Mc/sec: 1187.90
//
Query:       MMETSP1137-20121227|2848_1  [L=429]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (429 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        44  (0.0107265); expected 82.0 (0.02)
Passed bias filter:                       39  (0.00950756); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.14s 00:00:00.43 Elapsed: 00:00:00.35
# Mc/sec: 1617.81
//
Query:       MMETSP1137-20121227|2849_1  [L=429]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (429 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        62  (0.0151146); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.13s 00:00:00.42 Elapsed: 00:00:00.42
# Mc/sec: 1348.17
//
Query:       MMETSP1137-20121227|2850_1  [L=44]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (44 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        37  (0.00901999); expected 82.0 (0.02)
Passed bias filter:                       35  (0.00853242); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.26
# Mc/sec: 223.37
//
Query:       MMETSP1137-20121227|2851_1  [L=643]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0036   14.3   0.0      0.008   13.2   0.0    1.5  1  TIGR02484 CitB: CitB domain protein


Domain annotation for each model (and alignments):
>> TIGR02484  CitB: CitB domain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   0.0   1.9e-06     0.008     220     287 ..     419     484 ..     406     503 .. 0.77

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 1.9e-06
   TIGR02484 220 hllagGflLcflstv.aatvyhklLGreaPypllslPvlLGlvGGvllvvGaagll.kekarrePavrae 287
                  +l gGf L f+  v  +t++ +   +  Py    +P +L   G + ++vG+a l+  +k+   P  rae
  MMETSP1137-20121227|2851_1 419 QALLGGFALLFAVLVlWSTAWFH---KGGPYYTELVPFILLFQGTCCFCVGLAVLWyVRKTTILP-ARAE 484
                 5789*****99886524555555...578***99**********************766777777.4444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (643 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       143  (0.034861); expected 82.0 (0.02)
Passed bias filter:                      103  (0.0251097); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.12s 00:00:00.58 Elapsed: 00:00:00.56
# Mc/sec: 1515.52
//
Query:       MMETSP1137-20121227|2852_1  [L=208]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (208 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        83  (0.020234); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.15s 00:00:00.37 Elapsed: 00:00:00.35
# Mc/sec: 784.39
//
Query:       MMETSP1137-20121227|2853_1  [L=486]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (486 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       257  (0.0626524); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.16s 00:00:00.51 Elapsed: 00:00:00.52
# Mc/sec: 1233.59
//
Query:       MMETSP1137-20121227|2854_1  [L=174]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (174 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       172  (0.0419308); expected 82.0 (0.02)
Passed bias filter:                       96  (0.0234032); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.12s 00:00:00.32 Elapsed: 00:00:00.33
# Mc/sec: 695.94
//
Query:       MMETSP1137-20121227|2855_1  [L=672]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (672 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        87  (0.0212092); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.16s 00:00:00.57 Elapsed: 00:00:00.49
# Mc/sec: 1810.14
//
Query:       MMETSP1137-20121227|2856_1  [L=629]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   1.3e-221  735.7   0.0   1.5e-221  735.5   0.0    1.1  1  TIGR01628 PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family
    2.1e-58  196.4   5.3    1.1e-28   98.3   1.9    4.0  3  TIGR01622 SF-CC1: splicing factor, CC1-like family
    4.6e-51  172.3   0.4    1.3e-22   78.7   0.0    3.1  3  TIGR01661 ELAV_HUD_SF: ELAV/HuD family splicing factor
      9e-41  138.4  11.5    3.5e-19   67.4   0.1    3.8  4  TIGR01659 sex-lethal: sex-lethal family splicing factor
    2.7e-36  123.0   2.5    1.1e-10   38.4   0.0    4.1  4  TIGR01642 U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor
    7.7e-26   88.8   1.0    4.2e-13   46.7   0.0    3.5  3  TIGR01645 half-pint: poly-U binding splicing factor, half-pint family
    4.4e-23   79.7  14.3    5.8e-08   29.8   0.0    5.0  5  TIGR01648 hnRNP-R-Q: hnRNP-R, Q splicing factor family
    4.7e-06   23.7   6.8       0.54    7.0   0.0    4.5  5  TIGR01649 hnRNP-L_PTB: hnRNP-L/PTB/hephaestus splicing factor family


Domain annotation for each model (and alignments):
>> TIGR01628  PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  735.5   0.0    3e-224  1.5e-221       1     595 []       7     609 ..       7     609 .. 0.81

  Alignments for each domain:
  == domain 1    score: 735.5 bits;  conditional E-value: 3e-224
   TIGR01628   1 aSlyvGdLdedvtEavLyelFkevgsvlsvRvCrDsvtrrSLgYaYvNfqnladAerAldtlnyknlkgkpiRlmwsqRdPslRksGvgNifvKnLdksidnkaLfdtFskfGnilsckvatdeeGkSkgYgfvhfedeesAkeAieklNgvllndkevyvgkfikksere..atkekkftNlYvKnlddsvtedklrelFakfGeitSaivkkdeknrkrgfafvnyekaedAkkAveelngkkitlaatgkilyVgraqkraeReaelkakfeelkqerkekaqgvNlYvkNlddtvddekLrelFeefGeitSakvmldekekSkgFGFVcfssqeeAnkAvtelhgkilngkPLyvalAqrkeqRkarLqqqfmqasaesrqlsigspvigaanisgrh..qaaqqqavvtqavkqqlasqplnfkinqmmlstqnpskpeapnalaqlaqqrlqaqgr.......rnlnnrnrnvlgnmnkkqqnaaskanqanvkaqpqaqsknqmqqvvqdnn....................lpqkqatksn......nkestltaaalasaspseqkqvLGerLfplveklepelaaKitGmlLEmdnsEllelleseeqLkkkvdEAleVLk 595
                 aSlyvGdL+++vtEa L+elF+ vg+v+s+RvCrDsvtrrSLgYaYvNf++  dAerAl+t+ny+ +k+kp R+mw +RdPslRksG+gNif+KnLdksidnkaL+dtFs+fGnilsckvatd++G SkgYgfvh+e++++A+ A+ ++Ng+lln+k+v+vg f++++er      ++ ftN++ Kn++ + ++++l+e+Fa+ G i Sa+v+k ++++ rgf+fvn++++ +A+kA+eelngk+++    gk ++Vgraqk+ eRe+el+ kfe+lk er +k  gvNlYvkNldd++ddekLre F +fG+i Sakvm d+k++S+gFGFVcf   eeA+kAv e++g+il++kPLyvalAqrk++Rk++L+qq++q+ +   +l+ g   ++ +  +g +   ++qq + + q+ +  + +q+++ +      +++ ++ +  ++a+ + +   +q++gr        ++  r +  +gnm ++q+                     + qq +q+++                    +p +  +           + +  aa+la+a+p++qkq+LGerLfpl++++ep+la+KitGmlLEmdn+Ell+lles+++L++k+ EAl VL+
  MMETSP1137-20121227|2856_1   7 ASLYVGDLHPEVTEALLFELFNAVGPVASIRVCRDSVTRRSLGYAYVNFHSVVDAERALETMNYTLIKNKPCRIMWCHRDPSLRKSGTGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVATDDNGGSKGYGFVHYETQDAANMAVTRVNGMLLNAKKVFVGFFVSRKERSagEGGDDVFTNVFTKNVPVEWDDEQLKEFFAQCGTIKSAVVMKSNEGKPRGFGFVNFAEHAEAAKAIEELNGKEVN----GKPIFVGRAQKKRERERELRDKFEQLKLERASKFSGVNLYVKNLDDGIDDEKLREAFAPFGNISSAKVMSDDKGVSRGFGFVCFGATEEATKAVAEMNGHILGNKPLYVALAQRKDERKNMLEQQHTQRVTGGVRLPRGPESQSQM-YPGAPffYSPQQMPPQPQGARGFMYPQQMMMRPGPGVYQPMGQMGNYGAMAMGNRGGR-AQQGGRpqggpqgGAM--RGQPKQGNM-QQQRS--------------------GFQQRPQGGAaggqggpggqrkaggppphgMPMQPMQGPAggapppMAPREINAATLAAAPPEQQKQLLGERLFPLIQDVEPQLAGKITGMLLEMDNGELLNLLESPDALNAKIVEALSVLQ 609
                 8*************************************************************************************************************************************************************************965567899********************************************************************....********************************************************************************************************************************888888886666555555.3443322222222222233333333333333322222223333322222222222221.2233332222211111..111123333.11222....................22222222222222222333333333332322222222223446666778899********************************************************************8 PP

>> TIGR01622  SF-CC1: splicing factor, CC1-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.4   0.0     3e-16   1.5e-13     217     283 ..       4      70 ..       1      84 [. 0.92
   2 !   44.7   0.2   3.8e-15     2e-12     221     304 ..      96     178 ..      84     194 .. 0.88
   3 !   98.3   1.9   2.1e-31   1.1e-28     122     309 ..     189     377 ..     187     398 .. 0.87

  Alignments for each domain:
  == domain 1    score: 48.4 bits;  conditional E-value: 3e-16
   TIGR01622 217 iadlkLYvGnlhfnitEqeLrqiFepFGeielvqlqkDpetGrskGyGFiqFsdaeeakeAleklNG 283
                  a+  LYvG+lh ++tE  L ++F++ G++ ++++ +D+ t rs Gy +++F+    a +Ale++N 
  MMETSP1137-20121227|2856_1   4 YATASLYVGDLHPEVTEALLFELFNAVGPVASIRVCRDSVTRRSLGYAYVNFHSVVDAERALETMNY 70 
                 57789*************************************************************5 PP

  == domain 2    score: 44.7 bits;  conditional E-value: 3.8e-15
   TIGR01622 221 kLYvGnlhfnitEqeLrqiFepFGeielvqlqkDpetGrskGyGFiqFsdaeeakeAleklNGlelAGReikvglasDvteesd 304
                  +++ nl  +i ++ L + F +FG+i++ ++  D+++  skGyGF+ ++  + a  A +++NG+ l  +++ vg+    +e+s+
  MMETSP1137-20121227|2856_1  96 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVATDDNG-GSKGYGFVHYETQDAANMAVTRVNGMLLNAKKVFVGFFVSRKERSA 178
                 67899999****************************9.59*******************************9999666665554 PP

  == domain 3    score: 98.3 bits;  conditional E-value: 2.1e-31
   TIGR01622 122 vfvlqlalklreRdlkEFFskvgkvrdvrlikDrnSrrSkGvaYvEFydvesvqlAl.altGqkllgvPvivqaseAEKNraakaatelsg...dipnsiadlkLYvGnlhfnitEqeLrqiFepFGeielvqlqkDpetGrskGyGFiqFsdaeeakeAleklNGlelAGReikvglasDvteesdaslas 309
                 vf  ++++  ++ +lkEFF + g ++ + +++  n ++ +G ++v+F ++    +A+ +l+G+ + g+P+ v  ++  + r  +   + +    +  +  +   LYv nl   i +++Lr+ F pFG+i + +++ D+++  s+G+GF+ F  +eea +A  ++NG  l  +++ v+la+   e+++  l++
  MMETSP1137-20121227|2856_1 189 VFTKNVPVEWDDEQLKEFFAQCGTIKSA-VVMKSNEGKPRGFGFVNFAEHAEAAKAIeELNGKEVNGKPIFVGRAQKKRERERELRDKFEQlklERASKFSGVNLYVKNLDDGIDDEKLREAFAPFGNISSAKVMSDDKG-VSRGFGFVCFGATEEATKAVAEMNGHILGNKPLYVALAQRKDERKNM-LEQ 377
                 99***********************987.6777899**************9999999459************9998766666655444433333666678899***********************************98.*************************************9988777766.333 PP

>> TIGR01661  ELAV_HUD_SF: ELAV/HuD family splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.7   0.0   2.6e-25   1.3e-22       8     154 ..      11     158 ..       5     164 .. 0.91
   2 !   64.7   0.0   4.7e-21   2.4e-18      24     157 ..     115     253 ..     114     264 .. 0.85
   3 !   42.1   0.0   3.4e-14   1.7e-11     266     348 ..     286     368 ..     277     371 .. 0.77

  Alignments for each domain:
  == domain 1    score: 78.7 bits;  conditional E-value: 2.6e-25
   TIGR01661   8 vnylPqtmtqeeirslftsiGeiescklvrdkvtGqslGyGfvnyvreedaekavnslnGlrlqnktikvsyar..PssdsikganlyvsGlPktmtqkeleslfspfGkiitsrilsdnvtdlskGvGfirfdkreeadraikalnGt 154
                 v  l  ++t+  +  lf ++G + s+++ rd vt +slGy +vn+    dae+a++++n   ++nk  ++ +    Ps  +    n+++  l k++  k l   fs fG+i++ ++ +d+ ++ skG Gf+ ++ ++ a+ a+  +nG 
  MMETSP1137-20121227|2856_1  11 VGDLHPEVTEALLFELFNAVGPVASIRVCRDSVTRRSLGYAYVNFHSVVDAERALETMNYTLIKNKPCRIMWCHrdPSLRKSGTGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVATDD-NGGSKGYGFVHYETQDAANMAVTRVNGM 158
                 555666778888889***************************************************9999776334999999999******************************99997.677***********************96 PP

  == domain 2    score: 64.7 bits;  conditional E-value: 4.7e-21
   TIGR01661  24 ftsiGeiescklvrdkvtGqslGyGfvnyvreedaekavnslnGlrlqnktikvsy..arPssdsikg.....anlyvsGlPktmtqkeleslfspfGkiitsrilsdnvtdlskGvGfirfdkreeadraikalnGttPs 157
                 f+++G+i sck+  d  +G s GyGfv y  ++ a+ av+ +nG+ l +k + v +  +r    +  g     +n++   +P +   ++l ++f++ G i  s +++++  +  +G Gf+ f ++ ea +ai +lnG+  +
  MMETSP1137-20121227|2856_1 115 FSAFGNILSCKVATDD-NGGSKGYGFVHYETQDAANMAVTRVNGMLLNAKKVFVGFfvSRKERSAGEGgddvfTNVFTKNVPVEWDDEQLKEFFAQCGTI-KSAVVMKSNEGKPRGFGFVNFAEHAEAAKAIEELNGKEVN 253
                 999*********9998.5779*******************************99983333333333333334469999999*****************86.67777788899*************************8754 PP

  == domain 3    score: 42.1 bits;  conditional E-value: 3.4e-14
   TIGR01661 266 dgagycifvynlspdtdeavl.qlfgpfGavqsvkiirdlttnkckGygfvsmtnydeaalailslnGytlgnrvlqvsfktnk 348
                 + +g  ++v nl    d+  l   f+pfG + s k++ d      +G+gfv     +ea++a++ +nG  lgn+ l v++   k
  MMETSP1137-20121227|2856_1 286 KFSGVNLYVKNLDDGIDDEKLrEAFAPFGNISSAKVMSDD-KGVSRGFGFVCFGATEEATKAVAEMNGHILGNKPLYVALAQRK 368
                 4567788888888888877776788888888888888887.5677888888888888888888888888888888888876655 PP

>> TIGR01659  sex-lethal: sex-lethal family splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.3   0.0   4.4e-16   2.3e-13     109     206 ..       8     107 ..       2     110 .. 0.87
   2 !   67.4   0.1   6.9e-22   3.5e-19     104     257 ..      91     249 ..      83     267 .. 0.86
   3 !   34.7   0.0   6.3e-12   3.2e-09     106     276 ..     288     369 ..     277     412 .. 0.62
   4 ?   -6.4   3.7         8   4.1e+03     310     320 ..     464     474 ..     435     524 .. 0.49

  Alignments for each domain:
  == domain 1    score: 48.3 bits;  conditional E-value: 4.4e-16
   TIGR01659 109 nlivnylpqdmtdrelyalfrtigpintcrimrdyktgysfgyafvdfaseadsqraikslngitvrnkrlkvsyar..pggesikdtnlyvtnlprtit 206
                  l v  l  ++t+  l+ lf ++gp+ + r+ rd  t  s gya+v+f s +d+ ra++++n   ++nk  ++ +    p   +    n+++ nl ++i 
  MMETSP1137-20121227|2856_1   8 SLYVGDLHPEVTEALLFELFNAVGPVASIRVCRDSVTRRSLGYAYVNFHSVVDAERALETMNYTLIKNKPCRIMWCHrdPSLRKSGTGNIFIKNLDKSID 107
                 67788888899999*******************************************************7777765412666777778*********996 PP

  == domain 2    score: 67.4 bits;  conditional E-value: 6.9e-22
   TIGR01659 104 rasgtnlivnylpqdmtdrelyalfrtigpintcrimrdyktgysfgyafvdfaseadsqraikslngitvrnkrlkvsy.....arpggesikd..tnlyvtnlprtitddqldtifgkygsivqknilrdkltgkprgvafvrfnkreeaqeaisalnn 257
                 ++ + n+ +  l + + ++ ly  f + g i +c++  d   g s gy+fv + ++  +  a+  +ng+ +  k++ v +      r  ge   d  tn++  n+p    d+ql+  f + g+i    +++    gkprg  fv f    ea +ai  ln 
  MMETSP1137-20121227|2856_1  91 KSGTGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVATDDN-GGSKGYGFVHYETQDAANMAVTRVNGMLLNAKKVFVGFfvsrkERSAGEGGDDvfTNVFTKNVPVEWDDEQLKEFFAQCGTIKSAVVMK-SNEGKPRGFGFVNFAEHAEAAKAIEELNG 249
                 444559999*****************************976.6699******************************9998554444677777776669*************************97766655.678************************96 PP

  == domain 3    score: 34.7 bits;  conditional E-value: 6.3e-12
   TIGR01659 106 sgtnlivnylpqdmtdrelyalfrtigpintcrimrdyktgysfgyafvdfaseadsqraikslngitvrnkrlkvsyarpggesikdtnlyvtnlprtitddqldtifgkygsivqknilrdkltgkprgvafvrfnkreeaqeaisalnnvipeggsqpltvrlaeehg 276
                 sg nl v  l + + d +l   f   g i + ++m d k g s g++fv f++  ++ +a+ ++ng  + nk l                                                                                         v la+ + 
  MMETSP1137-20121227|2856_1 288 SGVNLYVKNLDDGIDDEKLREAFAPFGNISSAKVMSDDK-GVSRGFGFVCFGATEEATKAVAEMNGHILGNKPL----------------------------------------------------------------------------------------YVALAQRKD 369
                 455555555555555555555555555555555555544.4555555555555555555555555555555555........................................................................................555554443 PP

  == domain 4    score: -6.4 bits;  conditional E-value: 8
   TIGR01659 310 lpqppafmgan 320
                 ++  p   ++ 
  MMETSP1137-20121227|2856_1 464 PQGGPQGGAMR 474
                 22222222222 PP

>> TIGR01642  U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   1.7e-06   0.00086     298     360 ..       8      70 ..       4      80 .. 0.93
   2 !   32.4   0.3   1.4e-11   7.3e-09     297     371 ..      95     168 ..      89     178 .. 0.91
   3 !   38.4   0.0   2.2e-13   1.1e-10     290     375 ..     180     264 ..     168     275 .. 0.88
   4 !   33.3   0.0   8.1e-12   4.2e-09     295     386 ..     288     379 ..     271     399 .. 0.85

  Alignments for each domain:
  == domain 1    score: 15.7 bits;  conditional E-value: 1.7e-06
   TIGR01642 298 klyignLPldlkddqvkeLLesFGdLkaFnliKdlatGlsKGyaFceykdssvtdlAiaaLnG 360
                  ly+g+L  ++++  + eL +  G++ +  + +d+ t  s Gya+++++   +++ A++++n 
  MMETSP1137-20121227|2856_1   8 SLYVGDLHPEVTEALLFELFNAVGPVASIRVCRDSVTRRSLGYAYVNFHSVVDAERALETMNY 70 
                 69*******************************************************999985 PP

  == domain 2    score: 32.4 bits;  conditional E-value: 1.4e-11
   TIGR01642 297 dklyignLPldlkddqvkeLLesFGdLkaFnliKdlatGlsKGyaFceykdssvtdlAiaaLnGiklgdkkLnvk 371
                   ++i+nL + ++++ + +    FG++++ ++  d + G sKGy+F+ y+    +++A++ +nG+ l  kk+ v 
  MMETSP1137-20121227|2856_1  95 GNIFIKNLDKSIDNKALYDTFSAFGNILSCKVATDDN-GGSKGYGFVHYETQDAANMAVTRVNGMLLNAKKVFVG 168
                 579****************************999976.679*************************999998775 PP

  == domain 3    score: 38.4 bits;  conditional E-value: 2.2e-13
   TIGR01642 290 ktvldsedklyignLPldlkddqvkeLLesFGdLkaFnliKdlatGlsKGyaFceykdssvtdlAiaaLnGiklgdkkLnvkrAtv 375
                 +++ d    ++ +n+P + +d+q+ke   + G +k+  ++K +++G+ +G++F+++ +   +  Ai+ LnG+++ +k + v rA  
  MMETSP1137-20121227|2856_1 180 EGGDDVFTNVFTKNVPVEWDDEQLKEFFAQCGTIKSAVVMK-SNEGKPRGFGFVNFAEHAEAAKAIEELNGKEVNGKPIFVGRAQK 264
                 5666777889**************************76665.799*********************************99999975 PP

  == domain 4    score: 33.3 bits;  conditional E-value: 8.1e-12
   TIGR01642 295 sedklyignLPldlkddqvkeLLesFGdLkaFnliKdlatGlsKGyaFceykdssvtdlAiaaLnGiklgdkkLnvkrAtvg.akqatieken 386
                 s   ly++nL   ++d++++e   +FG++ + +++ d + G s+G++F+ +  +  +  A+a +nG  lg+k L v  A     ++ ++e++ 
  MMETSP1137-20121227|2856_1 288 SGVNLYVKNLDDGIDDEKLREAFAPFGNISSAKVMSD-DKGVSRGFGFVCFGATEEATKAVAEMNGHILGNKPLYVALAQRKdERKNMLEQQH 379
                 55679****************************9988.68************************************99976514556666665 PP

>> TIGR01645  half-pint: poly-U binding splicing factor, half-pint family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.7   0.0   8.1e-16   4.2e-13     103     273 ..       4     166 ..       1     174 [. 0.83
   2 !   13.9   0.0   7.2e-06    0.0037     211     277 ..     197     262 ..     185     268 .. 0.81
   3 !   23.5   0.0   8.9e-09   4.5e-06     117     183 ..     301     367 ..     270     381 .. 0.83

  Alignments for each domain:
  == domain 1    score: 46.7 bits;  conditional E-value: 8.1e-16
   TIGR01645 103 laimsrvvGsisfelkedtlrrafdPfGPiksinmsWdpvtqkhkgfafve.evPeaallaleqmngallGGrnlkvgrPsnlpqaqpiidevqeeakkfnrivasvhpdlseedlksvfeafGeivkcklaraptlrkhkGfGflefenlqsqseaiasmnlfdlGGqllr 273
                  a  s  vG +  e+ e +l + f+  GP+ si +  d+vt++  g+a+v+      a  ale mn +l+  +  ++          +  d   +++ + n  +  + + + ++ l   f afG+i++ck+a +  + + kG+Gf+ +e + + + a++ +n + l  + + 
  MMETSP1137-20121227|2856_1   4 YATASLYVGDLHPEVTEALLFELFNAVGPVASIRVCRDSVTRRSLGYAYVNfHSVVDAERALETMNYTLIKNKPCRIM------WCHR--DPSLRKSGTGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVATDDNG-GSKGYGFVHYETQDAANMAVTRVNGMLLNAKKVF 166
                 56667779******************************************9855667889********9875555554......4433..333344445556699***************************99876.679*****************99997666665555 PP

  == domain 2    score: 13.9 bits;  conditional E-value: 7.2e-06
   TIGR01645 211 dlseedlksvfeafGeivkcklaraptlrkhkGfGflefenlqsqseaiasmnlfdlGGqllrvGka 277
                 +  +e lk  f   G i++  +  ++  +k +GfGf++f++     +ai  +n  ++ G+ + vG+a
  MMETSP1137-20121227|2856_1 197 EWDDEQLKEFFAQCGTIKSAVV-MKSNEGKPRGFGFVNFAEHAEAAKAIEELNGKEVNGKPIFVGRA 262
                 5568899999999999996555.55667788999999999999999999999999999999999886 PP

  == domain 3    score: 23.5 bits;  conditional E-value: 8.9e-09
   TIGR01645 117 lkedtlrrafdPfGPiksinmsWdpvtqkhkgfafve.evPeaallaleqmngallGGrnlkvgrPsn 183
                 + ++ lr+af+PfG i s ++  d   +  +gf fv     e a  a  +mng +lG + l v + + 
  MMETSP1137-20121227|2856_1 301 IDDEKLREAFAPFGNISSAKVMSDDK-GVSRGFGFVCfGATEEATKAVAEMNGHILGNKPLYVALAQR 367
                 67889*************98555543.4568999999899999****************999996654 PP

>> TIGR01648  hnRNP-R-Q: hnRNP-R, Q splicing factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0   1.1e-06   0.00054      60     125 ..       8      74 ..       3      83 .. 0.91
   2 !   14.2   0.0   5.9e-06     0.003      60     122 ..      96     158 ..      86     174 .. 0.88
   3 !   21.8   0.0   2.9e-08   1.5e-05      59     127 ..     187     254 ..     179     272 .. 0.70
   4 !   29.8   0.0   1.1e-10   5.8e-08     236     388 ..     292     461 ..     285     494 .. 0.69
   5 ?   -1.7   4.3       0.4   2.1e+02      39      58 ..     506     525 ..     502     527 .. 0.86

  Alignments for each domain:
  == domain 1    score: 16.7 bits;  conditional E-value: 1.1e-06
   TIGR01648  60 evfvGkiPrdlyedelvPlfekvGkiyelrlmmd.ldGknrGyafvtfcnkeeakeavkelnnyeir 125
                  ++vG +  ++ e  l  lf+ vG++  +r+  d +  +  Gya+v f   ++a++a+  +n   i+
  MMETSP1137-20121227|2856_1   8 SLYVGDLHPEVTEALLFELFNAVGPVASIRVCRDsVTRRSLGYAYVNFHSVVDAERALETMNYTLIK 74 
                 579*******************************99999*******************999866565 PP

  == domain 2    score: 14.2 bits;  conditional E-value: 5.9e-06
   TIGR01648  60 evfvGkiPrdlyedelvPlfekvGkiyelrlmmdldGknrGyafvtfcnkeeakeavkelnny 122
                 ++f+  + + + +  l   f   G+i   ++  d +G  +Gy fv +  +++a+ av ++n  
  MMETSP1137-20121227|2856_1  96 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVATDDNGGSKGYGFVHYETQDAANMAVTRVNGM 158
                 6999999999999999999**************************************999865 PP

  == domain 3    score: 21.8 bits;  conditional E-value: 2.9e-08
   TIGR01648  59 cevfvGkiPrdlyedelvPlfekvGkiyelrlmmdldGknrGyafvtfcnkeeakeavkelnnyeirpG 127
                 ++vf   +P +  +++l   f + G i    +m   +Gk rG+ fv f++  ea +a+ eln  e+ +G
  MMETSP1137-20121227|2856_1 187 TNVFTKNVPVEWDDEQLKEFFAQCGTIKSAVVMKSNEGKPRGFGFVNFAEHAEAAKAIEELNGKEV-NG 254
                 566666677666555666777777777777777777777777777777777777777777777766.33 PP

  == domain 4    score: 29.8 bits;  conditional E-value: 1.1e-10
   TIGR01648 236 lyvrnlmletteeiieksfsefkpGavervkkird.......yafvhfedredavkamdelnGkeleGseievtlakPvdkesyv....rytkaakgrgkeaqaaaq.....slsqvydpa...srslayedyyynalia..psldypakkgsirgrgrgaagsraaGvrGlgl 388
                 lyv+nl   + +e ++  f+ f  G +   k + d       + fv f   e+a ka+ e+nG+ l  +++ v+la+  d  + +      ++ ++g +  +  + q        + y+p+   ++  ++ ++ y++++   p    ++  g++ + g +a g+r  G+r  ++
  MMETSP1137-20121227|2856_1 292 LYVKNLDDGIDDEKLREAFAPF--GNISSAKVMSDdkgvsrgFGFVCFGATEEATKAVAEMNGHILGNKPLYVALAQRKDERKNMleqqHTQRVTGGVRLPRGPESQsqmypGAPFFYSPQqmpPQPQGARGFMYPQQMMmrPGPGVYQPMGQMGNYGAMAMGNR--GGRAQQG 461
                 9****************99888..66666666544333333399********************************99997654311114567778866655555551010233457777622245678888888887666688888888899999988888888..4443322 PP

  == domain 5    score: -1.7 bits;  conditional E-value: 0.4
   TIGR01648  39 GqrkyGGPPPgyegaqPerG 58 
                 Gqrk GGPPP    +qP +G
  MMETSP1137-20121227|2856_1 506 GQRKAGGPPPHGMPMQPMQG 525
                 9*********9888888776 PP

>> TIGR01649  hnRNP-L_PTB: hnRNP-L/PTB/hephaestus splicing factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.2   0.0    0.0074       3.8     127     183 ..      18      78 ..       8      87 .. 0.64
   2 !    7.0   0.0     0.001      0.54     300     368 ..      96     167 ..      85     177 .. 0.80
   3 !    6.2   0.0    0.0019      0.96     422     479 ..     193     253 ..     187     266 .. 0.54
   4 !    6.6   0.0    0.0014      0.72     300     373 ..     291     367 ..     265     385 .. 0.75
   5 ?   -3.9   0.8       2.1   1.1e+03     219     291 ..     479     552 ..     468     564 .. 0.53

  Alignments for each domain:
  == domain 1    score: 4.2 bits;  conditional E-value: 0.0074
   TIGR01649 127 vtlDvlyqifnrvGkVlrivi....fkknnsvqAlvefesvesAqkAKaaldgadiYngCC 183
                 vt  +l+++fn+vG+V  i +    +++ +   A v+f+sv  A++A ++++   i n  C
  MMETSP1137-20121227|2856_1  18 VTEALLFELFNAVGPVASIRVcrdsVTRRSLGYAYVNFHSVVDAERALETMNYTLIKNKPC 78 
                 5666777777777777777661222234444557777777777777777777666665555 PP

  == domain 2    score: 7.0 bits;  conditional E-value: 0.001
   TIGR01649 300 VllvsnLeeekvtpdalFnlfgvYGdvervkilkn....kketalvemadpqqaqlalthLdkvklfgkklrv 368
                  +++ nL++  +  +al+  f+ +G++   k+        k+ ++v + ++++a+ a+t ++++ l  kk+ v
  MMETSP1137-20121227|2856_1  96 NIFIKNLDK-SIDNKALYDTFSAFGNILSCKVATDdnggSKGYGFVHYETQDAANMAVTRVNGMLLNAKKVFV 167
                 478999987.58999*************9999986223357789*******************9999988754 PP

  == domain 3    score: 6.2 bits;  conditional E-value: 0.0019
   TIGR01649 422 NiPlsvsEedlkelfaekgvkvkafkvFpkd...skmallelesveeAveaLialnnhqlk 479
                 N+P + ++e+lke fa+ g+  +a+ + +++   +  + +++    eA +a+ +ln ++++
  MMETSP1137-20121227|2856_1 193 NVPVEWDDEQLKEFFAQCGTIKSAVVMKSNEgkpRGFGFVNFAEHAEAAKAIEELNGKEVN 253
                 6666666666666666655522222222222335556666666666666666666555544 PP

  == domain 4    score: 6.6 bits;  conditional E-value: 0.0014
   TIGR01649 300 VllvsnLeeekvtpdalFnlfgvYGdvervkilknkket....alvemadpqqaqlalthLdkvklfgkklrvavSkq 373
                  l v nL++  +  ++l   f+ +G++   k++   k+     ++v ++  ++a +a+  ++++ l +k+l va++++
  MMETSP1137-20121227|2856_1 291 NLYVKNLDDG-IDDEKLREAFAPFGNISSAKVMSDDKGVsrgfGFVCFGATEEATKAVAEMNGHILGNKPLYVALAQR 367
                 4667777764.7778888888888888888888887654222268888888888888888888888888888877655 PP

  == domain 5    score: -3.9 bits;  conditional E-value: 2.1
   TIGR01649 219 veleqtaaqrqdallrdrPssygd.avdglssrt..galaplalg..draglaaglapsreslalasaalapaissta 291
                 ++++q++++      ++rP+  +   ++g + +   g+ +p+ ++     g+a+g +p +   ++ +a+la a+++++
  MMETSP1137-20121227|2856_1 479 QGNMQQQRS----GFQQRPQGGAAgGQGGPGGQRkaGGPPPHGMPmqPMQGPAGGAPPPMAPREINAATLAAAPPEQQ 552
                 333333222....35577765443222222222244666666544104467777777777777777777666655554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (629 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        95  (0.0231594); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         8  (0.00195027); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.71u 0.19s 00:00:00.89 Elapsed: 00:00:00.59
# Mc/sec: 1407.14
//
Query:       MMETSP1137-20121227|2857_1  [L=287]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (287 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       115  (0.0280351); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.16s 00:00:00.42 Elapsed: 00:00:00.33
# Mc/sec: 1147.91
//
Query:       MMETSP1137-20121227|2858_1  [L=63]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (63 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       113  (0.0275475); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.12s 00:00:00.25 Elapsed: 00:00:00.28
# Mc/sec: 286.73
//
Query:       MMETSP1137-20121227|2859_1  [L=280]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.7e-70  234.2   0.0    6.7e-70  234.0   0.0    1.0  1  TIGR02037 degP_htrA_DO: peptidase Do
    1.8e-44  150.1   0.4    2.2e-44  149.9   0.3    1.0  1  TIGR02038 protease_degS: periplasmic serine peptidase DegS
  ------ inclusion threshold ------
      0.033   11.1   0.0      0.074    9.9   0.0    1.5  2  TIGR00225 prc: C-terminal processing peptidase


Domain annotation for each model (and alignments):
>> TIGR02037  degP_htrA_DO: peptidase Do
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  234.0   0.0   4.9e-73   6.7e-70      83     316 ..       2     233 ..       1     250 [. 0.94

  Alignments for each domain:
  == domain 1    score: 234.0 bits;  conditional E-value: 4.9e-73
   TIGR02037  83 akeikvklsdgrefkaklvgkDektDiAvlkieakkklpvvklgdsdklrvGdlvlAiGnPfglgetVtaGivSAlgrsglnked...yeeFIQtDaaiNpGNSGGpLvnlkGeviGiNtaIlsksGgsvGigFAiPinlvkkvveqllkkgkvkrglLGvk..iqevtkdlakslglekakGalvaevlkgspAekaGlkaGDvilkvngkkiksaadlreaigtlkpgkkvklkilR 316
                 a++++  l+dgr ++a+l+gkD  tD+A+l++ a   lp+++lgdsdkl vG+lv+AiGnP+g+++tV+aG+vSA grs l+++d   +e  IQtD+a+NpGNSGGpLv+ kG v+GiNtaI+    g+++i+F++P++++++vv++l  +g+v+r++LGv+  + +v++ ++++ g +k+++ l  ++++gspA+ aG++  Dv+l + + +i s++++++ +    pg++++l+++R
  MMETSP1137-20121227|2859_1   2 ATKMSALLTDGRSIEARLIGKDVATDLALLQLGAGG-LPYATLGDSDKLLVGQLVIAIGNPLGFQSTVSAGVVSAVGRS-LRAKDqrlIEGIIQTDVALNPGNSGGPLVDSKGIVVGINTAIIM---GAQNISFSVPAKTAQWVVSELFAHGHVRRSYLGVNceMRPVHRSFQRQHGFDKPHACLARQIVPGSPAALAGIQPFDVLLFIGDTPIGSTDEIQQLLP--LPGTQITLRVFR 233
                 7899999**************************877.******************************************.444443689**********************************9...9*********************************855789******************************************************9886..589999999998 PP

>> TIGR02038  protease_degS: periplasmic serine peptidase DegS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  149.9   0.3   1.6e-47   2.2e-44     106     335 ..       7     233 ..       1     244 [. 0.90

  Alignments for each domain:
  == domain 1    score: 149.9 bits;  conditional E-value: 1.6e-47
   TIGR02038 106 valqdGrvfeaelvGsdsltdlavlkieadnlptiPlnadrkpkvGdvvlaiGnPynlGqtitqGiisatGrnglssvGr..qnflqtdaainaGnsGGalvnsaGelvGintlsfqkaadeeaeGinfaiPiklaskileklirdGrvirGylGvdg..edinslsaqllgledlrgivvtevdPngPaaragllvrdvilkldnkevisaeelmdrvaelrPgskvlvtvlr 335
                   l dGr +ea+l+G+d  tdla+l++ a +lp   l  + k  vG +v+aiGnP  +  t++ G++sa+Gr+    + r     +qtd a+n GnsGG lv+s+G +vGint+ +       a+ i+f++P k a+ +++ l + G v r ylGv+   +++  + ++  g ++ +  +  ++ P +Paa ag+++ dv+l + + ++ s+ e+ + +    Pg+++++ v+r
  MMETSP1137-20121227|2859_1   7 ALLTDGRSIEARLIGKDVATDLALLQLGAGGLPYATLGDSDKLLVGQLVIAIGNPLGFQSTVSAGVVSAVGRSLRAKDQRliEGIIQTDVALNPGNSGGPLVDSKGIVVGINTAIIMG-----AQNISFSVPAKTAQWVVSELFAHGHVRRSYLGVNCemRPVHRSFQRQHGFDKPHACLARQIVPGSPAALAGIQPFDVLLFIGDTPIGSTDEIQQLLP--LPGTQITLRVFR 233
                 5689********************************************************************8765555522589****************************99965.....5679*****************************9822456666678899*********************************999999988877664..588888888887 PP

>> TIGR00225  prc: C-terminal processing peptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0      0.34   4.7e+02     164     193 ..      71     101 ..      65     122 .. 0.70
   2 ?    9.9   0.0   5.4e-05     0.074      67     121 ..     183     234 ..     166     250 .. 0.79

  Alignments for each domain:
  == domain 1    score: -2.6 bits;  conditional E-value: 0.34
   TIGR00225 164 htaedvkkalkklekkkikgli.lDLRgNpG 193
                 ++   v + l++ +++ i+g+i  D+  NpG
  MMETSP1137-20121227|2859_1  71 GVVSAVGRSLRAKDQRLIEGIIqTDVALNPG 101
                 5556666777777778888887557777765 PP

  == domain 2    score: 9.9 bits;  conditional E-value: 5.4e-05
   TIGR00225  67 vsplegsPAekagikpgDkIikvdgksvagmelddavelirGkkgtkvkleiera 121
                  +++ gsPA+ agi+p D ++ ++++++ +    d ++++   +gt++ l++ r+
  MMETSP1137-20121227|2859_1 183 RQIVPGSPAALAGIQPFDVLLFIGDTPIGST---DEIQQLLPLPGTQITLRVFRP 234
                 67899*******************9998765...334444556788888887776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (280 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        78  (0.0190151); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.25u 0.14s 00:00:00.39 Elapsed: 00:00:00.37
# Mc/sec: 998.84
//
Query:       MMETSP1137-20121227|2861_1  [L=185]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.1e-05   20.9   0.2    3.9e-05   20.6   0.1    1.2  1  TIGR02037 degP_htrA_DO: peptidase Do
    0.00022   18.3   0.1    0.00029   17.9   0.0    1.2  1  TIGR02038 protease_degS: periplasmic serine peptidase DegS
    0.00045   17.0   0.0    0.00075   16.3   0.0    1.3  1  TIGR00054 TIGR00054: RIP metalloprotease RseP
  ------ inclusion threshold ------
      0.017   12.0   0.0      0.024   11.5   0.0    1.2  1  TIGR00225 prc: C-terminal processing peptidase
       0.03   11.1   0.0      0.039   10.7   0.0    1.2  1  TIGR02860 spore_IV_B: stage IV sporulation protein B


Domain annotation for each model (and alignments):
>> TIGR02037  degP_htrA_DO: peptidase Do
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   0.1   4.7e-08   3.9e-05     259     298 ..     128     167 ..      82     176 .. 0.84

  Alignments for each domain:
  == domain 1    score: 20.6 bits;  conditional E-value: 4.7e-08
   TIGR02037 259 kGalvaevlkgspAekaGlkaGDvilkvngkkiksaadlr 298
                   a v +v+++++A+kaG+k+ D++l++ng+++++ +d  
  MMETSP1137-20121227|2861_1 128 DFAEVLRVTPNGAAAKAGVKVSDLLLAINGQRVRTEEDAA 167
                 4567899***************************998865 PP

>> TIGR02038  protease_degS: periplasmic serine peptidase DegS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.0   3.5e-07   0.00029     282     315 ..     132     165 ..     107     175 .. 0.85

  Alignments for each domain:
  == domain 1    score: 17.9 bits;  conditional E-value: 3.5e-07
   TIGR02038 282 vtevdPngPaaragllvrdvilkldnkevisaee 315
                 v+ v Png aa+ag++v+d++l ++++ v + e+
  MMETSP1137-20121227|2861_1 132 VLRVTPNGAAAKAGVKVSDLLLAINGQRVRTEED 165
                 789************************9987765 PP

>> TIGR00054  TIGR00054: RIP metalloprotease RseP
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0   9.1e-07   0.00075     161     241 ..      89     167 ..      79     181 .. 0.76

  Alignments for each domain:
  == domain 1    score: 16.3 bits;  conditional E-value: 9.1e-07
   TIGR00054 161 dfkdvrkqlaekagevsveilaerenitleeekelkelgpkielvlsdvvdnspaekaGlkeGDkilkidgeklkswrdlv 241
                 + +  ++++ +  +++++++++   + ++  ++   ++g+ +   +  v++n++a+kaG+k  D +l i+g+ ++  +d  
  MMETSP1137-20121227|2861_1  89 GTSSTWQTVSRTHSKLVLNVVKSAADSAIGMRVFNADMGDFA--EVLRVTPNGAAAKAGVKVSDLLLAINGQRVRTEEDAA 167
                 556667777777777777776666666666665566677744..4679**************************9988865 PP

>> TIGR00225  prc: C-terminal processing peptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   2.9e-05     0.024      52      96 ..     116     162 ..      99     173 .. 0.81

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 2.9e-05
   TIGR00225  52 GiGiqvqmedd..eivivsplegsPAekagikpgDkIikvdgksvag 96 
                  iG++v + d     ++  +  ++ A+kag+k+ D +++++g+ v +
  MMETSP1137-20121227|2861_1 116 AIGMRVFNADMgdFAEVLRVTPNGAAAKAGVKVSDLLLAINGQRVRT 162
                 57888766554456788999999********************8876 PP

>> TIGR02860  spore_IV_B: stage IV sporulation protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   4.8e-05     0.039     126     156 ..     141     171 ..     115     182 .. 0.87

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 4.8e-05
   TIGR02860 126 aeeagiqvGDlilkvngekikeeedvaklin 156
                 a++ag++v Dl+l++ng+++++eed a l  
  MMETSP1137-20121227|2861_1 141 AAKAGVKVSDLLLAINGQRVRTEEDAAALTA 171
                 689**********************988765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (185 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       125  (0.0304729); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.22u 0.19s 00:00:00.41 Elapsed: 00:00:00.56
# Mc/sec: 436.04
//
Query:       MMETSP1137-20121227|2862_1  [L=337]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (337 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       124  (0.0302292); expected 82.0 (0.02)
Passed bias filter:                      108  (0.0263286); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.12s 00:00:00.38 Elapsed: 00:00:00.54
# Mc/sec: 823.71
//
Query:       MMETSP1137-20121227|2863_1  [L=483]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   6.5e-178  589.4   1.0   7.8e-178  589.1   0.7    1.0  1  TIGR03150 fabF: beta-ketoacyl-acyl-carrier-protein synthase II
    1.7e-26   89.2   3.3    2.3e-26   88.8   2.3    1.0  1  TIGR02813 omega_3_PfaA: polyketide-type polyunsaturated fatty acid synthase PfaA
    3.7e-07   27.2   3.7    4.9e-07   26.8   0.2    2.2  2  TIGR01930 AcCoA-C-Actrans: acetyl-CoA C-acetyltransferase
     0.0076   13.1   1.1      0.021   11.7   0.1    2.0  2  TIGR02430 pcaF: 3-oxoadipyl-CoA thiolase


Domain annotation for each model (and alignments):
>> TIGR03150  fabF: beta-ketoacyl-acyl-carrier-protein synthase II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  589.1   0.7  7.6e-181  7.8e-178       1     407 []      68     477 ..      68     477 .. 0.99

  Alignments for each domain:
  == domain 1    score: 589.1 bits;  conditional E-value: 7.6e-181
   TIGR03150   1 rrvvvtGlGlvtplgndveetwenllagksgikkitkfdasdlkvkiagevkdfdpeeyldkkearrldrfiqyalaaakealedagleleeedaervgvivgsGiGGletieeqakklkekgprrvsPffipsaiinlaagqvsiklglkgpnlavvtACatgthaigeaarlikegeadvmiagGaeaaitelgiagFaalkalst.rnddpekasrPfdkdrdGFvlgeGagvlvlEelehAkaRgAkiyaevvGyglsaDAyHitapaeegegaaramkaalkdaglkpeevdyinaHgtstplgdkaEtkaikkvfgehakklavsstKsmtGHlLGaaGaveavitvlaleeqvvpptinleepdeecdldyvpnka..reakievalsnsfGFGGtnaslvlk 407
                 r+vvvtGlG+vt+lg d++++++nll gk+gi++it+fd+   ++kia+ev+dfd+++y + k+a+r dr++++a+aaak al+d  l+++ ++ +r+gv+vgsG+GGl+++e++ ++l++kgp+r++Pf++ps+i n a + ++i+++++gpn+ +v+ACatgthaigea+++i++geadvm+agG+ea++t+lg+agF++++a++t  nd+p++asrPfd++r GFv+geGagvl+lE+ ehA aRgA+iy+e++Gy++++DA+Hitap++egeg+a++++ a+++ag++pe+v+yinaHgtstpl+dk+Et+a k+vfg+ha+k+++sstK++tGHlLGaaG+vea i+++ l+++ vpptin+e+pd++cdldyvpn +   e  i+v+ls+++GFGG+na+lv+k
  MMETSP1137-20121227|2863_1  68 RKVVVTGLGTVTSLGHDAHTFFDNLLXGKCGIQPITRFDSALHQTKIAAEVRDFDVSQYWEPKDAKRHDRYSHLAMAAAKIALKDGALDTTAVNPKRFGVLVGSGVGGLQAVETSCEILMTKGPKRITPFLLPSIIGNTAGSMIAIDINAQGPNYGIVSACATGTHAIGEALKYIQYGEADVMLAGGSEATVTPLGFAGFNSMRAMCTtSNDSPQTASRPFDANRAGFVMGEGAGVLLLESEEHALARGAHIYCELAGYAATCDAHHITAPHPEGEGMAECLNLAMDSAGVTPEQVQYINAHGTSTPLNDKFETMAYKRVFGDHAYKMKISSTKGATGHLLGAAGGVEAAICCKVLQTNQVPPTINYETPDPDCDLDYVPNVKyvAEXPIDVVLSDNLGFGGHNAALVFK 477
                 79************************************************************************************************************************************************************************************************************9989**************************************************************************************************************************************************************************9872257789******************97 PP

>> TIGR02813  omega_3_PfaA: polyketide-type polyunsaturated fatty acid synthase PfaA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.8   2.3   2.2e-29   2.3e-26     177     462 ..     199     479 ..     196     482 .. 0.85

  Alignments for each domain:
  == domain 1    score: 88.8 bits;  conditional E-value: 2.2e-29
   TIGR02813 177 fpGslGnvisGrianrfdlGGmncvvdaacaGslaalrlalselvegrsevmitGGvctdnspfmymsfsktpaftt.ned.....iqpfdidskGmmiGeGiGmvalkrledaerdGdriyavikGvGassdGkfksiyaprpe..GqakalkrayddaGfapktvGlieahGtGtaaGdvaefsGlssvfsqdndqkqhialGsvksqiGhtkstaGtaGlikaalalhhkvlpatinvdkpnpkldiedsplylntetrpwlqredglprraGis.sfGfGGtnfhlvleey 462
                 +p  +Gn     ia   +  G n  + +aca    a+  al  +  g ++vm++GG  +  +p  +  f    a+ t ++d      +pfd +  G ++GeG G++ l   e a   G +iy+ + G  a+ d +   i ap pe  G a  l+ a d aG  p+ v  i+ahGt t   d  e    ++vf +      ++ + s k   Gh   +aG       +  l    +p+tin + p+p  d++  p          ++ + + p    +s  +GfGG n  lv++ y
  MMETSP1137-20121227|2863_1 199 LPSIIGNTAGSMIAIDINAQGPNYGIVSACATGTHAIGEALKYIQYGEADVMLAGGSEATVTPLGFAGFNSMRAMCTtSNDspqtaSRPFDANRAGFVMGEGAGVLLLESEEHALARGAHIYCELAGYAATCDAHH--ITAPHPEgeGMAECLNLAMDSAGVTPEQVQYINAHGTSTPLNDKFETMAYKRVFGDH---AYKMKISSTKGATGHLLGAAGGVEAAICCKVLQTNQVPPTINYETPDPDCDLDYVPN---------VKYVAEXPIDVVLSdNLGFGGHNAALVFKRY 479
                 58899****************************************************************9998875513332333369*********************************************976..77777761156999****************************************854...3445678********999998877777778899999****************98763.........3444445555555423566666666666666 PP

>> TIGR01930  AcCoA-C-Actrans: acetyl-CoA C-acetyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.8   0.2   4.7e-10   4.9e-07      66     155 ..     211     301 ..     206     308 .. 0.72
   2 !    3.3   0.3    0.0069       7.1     245     350 ..     299     413 ..     290     429 .. 0.66

  Alignments for each domain:
  == domain 1    score: 26.8 bits;  conditional E-value: 4.7e-10
   TIGR01930  66 laaglpesvpaltvnrvCaSglqAvalaaqkikaGeadvvvaGGvEsmSrvpillkaslrresl..klgkakledqllkdl..vktklsmgetA 155
                 +a +++ + p + +  +Ca+g +A+  a + i+ Geadv++aGG E  + +p++     + + +    +++ + ++++  +  +++++ mge A
  MMETSP1137-20121227|2863_1 211 IAIDINAQGPNYGIVSACATGTHAIGEALKYIQYGEADVMLAGGSEA-TVTPLGFAGFNSMRAMctTSNDSPQTASRP--FdaNRAGFVMGEGA 301
                 5667777788999999******************************9.667776665433222200222333333333..25588899999887 PP

  == domain 2    score: 3.3 bits;  conditional E-value: 0.0069
   TIGR01930 245 DGAaalllmseevakelgltplarivsaavagvdp.....eemglgpvpAiekaLkkaglsisdidlvEinEAFAa.....qvlavekelgsldlekvNvnGGAiAlGHPlGasGa 350
                 +GA++lll see a + g ++  ++ ++a +         +  g g ++  + a++ ag++ +++++++ +           ++a ++ +g ++  k+ +     A+GH lGa G+
  MMETSP1137-20121227|2863_1 299 EGAGVLLLESEEHALARGAHIYCELAGYAATCDAHhitapHPEGEGMAECLNLAMDSAGVTPEQVQYINAHGTSTPlndkfETMAYKRVFG-DHAYKMKISSTKGATGHLLGAAGG 413
                 79******************99999999887644322222666788899999999999999999999988766543111102222233333.224444444444456666666665 PP

>> TIGR02430  pcaF: 3-oxoadipyl-CoA thiolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.7   0.1     2e-05     0.021      84     118 ..     223     257 ..     208     269 .. 0.87
   2 ?   -0.7   0.1      0.12   1.3e+02     257     365 ..     299     415 ..     284     428 .. 0.58

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 2e-05
   TIGR02430  84 tvnrlcgsgldalglaaraikaGeadlviaGGves 118
                  +   c++g +a+g a + i+ Gead+++aGG e+
  MMETSP1137-20121227|2863_1 223 GIVSACATGTHAIGEALKYIQYGEADVMLAGGSEA 257
                 56678***************************997 PP

  == domain 2    score: -0.7 bits;  conditional E-value: 0.12
   TIGR02430 257 dGaaalllaseeavkrhgltprarilaaasaG.....veprvmGlgpvpavkkllaraglsledldvie.......lneafaaqalavlrelgladddarvnpnGGaialGhplGasGarl 365
                 +Ga  lll see + ++g +  + + ++a++       +p+  G g +   + +++ ag++ e+++ i+       ln+ f   ++a  r +g    + ++ +  G  a Gh lGa+G   
  MMETSP1137-20121227|2863_1 299 EGAGVLLLESEEHALARGAHIYCELAGYAATCdahhiTAPHPEGEGMAECLNLAMDSAGVTPEQVQYINahgtstpLNDKFE--TMAYKRVFGDHAYKMKISSTKG--ATGHLLGAAGGVE 415
                 6777777777777777777766666666655412222345555666666666677777777677666652232333455553..4556666665444555555444..5688888887654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (483 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        97  (0.023647); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.45u 0.17s 00:00:00.62 Elapsed: 00:00:00.61
# Mc/sec: 1045.09
//
Query:       MMETSP1137-20121227|2864_1  [L=683]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.8e-13   48.2   0.0    3.9e-13   47.1   0.0    1.5  1  TIGR03162 ribazole_cobC: alpha-ribazole phosphatase
  ------ inclusion threshold ------
        5.4    3.9  10.8        9.1    3.2   7.5    1.2  1  TIGR00601 rad23: UV excision repair protein Rad23


Domain annotation for each model (and alignments):
>> TIGR03162  ribazole_cobC: alpha-ribazole phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.1   0.0   1.9e-16   3.9e-13      36     173 ..     443     581 ..     431     584 .. 0.88

  Alignments for each domain:
  == domain 1    score: 47.1 bits;  conditional E-value: 1.9e-16
   TIGR03162  36 rekledvkfdavvsSplsRcrelAellaeklklpiekddrLrEmdfGdwEgksydeisekyp.eldawakdlaharvp..gGEsvadfsqRveefleelakeekenvlivtHgGvirallahllglpleqllsieveygsi 173
                 +++ + + +  v++  l+R  ++A+ll+ + +l +   + L+E+ fG+ Eg +  ++++ +p e+ a ++d  ++r p  gGEs+ d+     +++ ++ ++   +v++v      r+ll +++g+p +++ +ie+e+g i
  MMETSP1137-20121227|2864_1 443 AAAAATAAAPVVLTGTLQRYVQMAALLEPRAQLVL-NLKPLNELCFGALEGLRCGKLQDSFPlEYAARLADKLNYRYPgvGGESYTDMIIQLRDVVLAIERT-RADVIVVCDVAAARVLLGYFQGIPHADIPEIEIEQGVI 581
                 333344556679****************8888777.5567************************************99445*******************99.88999999***************************976 PP

>> TIGR00601  rad23: UV excision repair protein Rad23
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   7.5    0.0044       9.1      77     130 ..     403     456 ..     382     467 .. 0.80

  Alignments for each domain:
  == domain 1    score: 3.2 bits;  conditional E-value: 0.0044
   TIGR00601  77 kKavkakaaePaatpesaptptpsatpasvaekksaaPasaveeessaeeeata 130
                  K   a+a++P++t +sa+++ p++ p++ ++++++aPa+a++  + a   + +
  MMETSP1137-20121227|2864_1 403 DKLAAAAAETPTSTGASASASLPANAPTASPPSTATAPAAAAAAATAAAPVVLT 456
                 5667789999*******9999997777777888889999999888877665555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (683 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       151  (0.0368113); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.33u 0.28s 00:00:00.61 Elapsed: 00:00:00.52
# Mc/sec: 1733.63
//
Query:       MMETSP1137-20121227|2865_1  [L=366]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (366 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        99  (0.0241346); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.15s 00:00:00.41 Elapsed: 00:00:00.55
# Mc/sec: 878.33
//
Query:       MMETSP1137-20121227|2866_1  [L=190]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (190 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       139  (0.0338859); expected 82.0 (0.02)
Passed bias filter:                      113  (0.0275475); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.17s 00:00:00.38 Elapsed: 00:00:00.56
# Mc/sec: 439.96
//
Query:       MMETSP1137-20121227|2867_1  [L=678]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.3e-21   73.6   0.4    6.3e-20   69.3   0.0    2.1  2  TIGR01426 MGT: glycosyltransferase, MGT family
     0.0053   13.6   0.0     0.0087   12.9   0.0    1.2  1  TIGR01133 murG: undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase
  ------ inclusion threshold ------
      0.029   11.5   0.0      0.047   10.8   0.0    1.3  1  TIGR00661 MJ1255: conserved hypothetical protein


Domain annotation for each model (and alignments):
>> TIGR01426  MGT: glycosyltransferase, MGT family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.1     0.012        16      71     122 ..     120     171 ..     106     175 .. 0.87
   2 !   69.3   0.0   4.6e-23   6.3e-20     215     389 ..     299     481 ..     259     485 .. 0.76

  Alignments for each domain:
  == domain 1    score: 2.2 bits;  conditional E-value: 0.012
   TIGR01426  71 leklldealsvlpqleealkedkpDlvvydiaslagkllarklkvPvislfp 122
                 ++ + + ++s+l++ + +++    D+vv d+a + ++  a+ +++P +  +p
  MMETSP1137-20121227|2867_1 120 VTFSCEACVSALQSPAVQTAIRSADFVVADVANVCSTFSAAYFDLPLMWYTP 171
                 55677889999999999999999***********************998777 PP

  == domain 2    score: 69.3 bits;  conditional E-value: 4.6e-23
   TIGR01426 215 eegsweepekgkpvvlisLG...tvfneqps..lyrtfveAfkdldwhvvlsvgkkvdpaelgelPk.NvevrqyvpqlevLek..adllvtHgGmnstmealaagvPlvavPqgadqeltarriaeLglgrvlekeevTaekLreavlavlsddevaerlkkirkeireaG..GarrAAdeiek 389
                 e+   + ++  + +vlisLG   + fn   +  l ++   A+ ++ ++  +s +   d a++   P   ++  +++ q+++L +   +++vtHgG ns++ea ++gvP+v  P+  dq  +  r  e g g++l++ + T++ L +a++a l++++++ + ++i++++r       +rAAd ie 
  MMETSP1137-20121227|2867_1 299 ENVREFADGATNGLVLISLGnhgAWFNPSRTlhLAEALRDALAGVHVVWKVSKADARDLANFT--PSsTMMLISWMDQQDILGHpnCRVFVTHGGHNSVQEAAFHGVPVVGTPLLVDQFDNLVRPLERGFGQTLDHKTFTVDDLIRAIKAALHEPKYRXNAQQIKQRLRAHTrlPVQRAADWIEY 481
                 4444667888899******73335799777722445555555555533335555566666666..541466789********8733679*****************************************************************************9987652257899999886 PP

>> TIGR01133  murG: undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.9   0.0   6.4e-06    0.0087     153     342 ..     279     462 ..     257     470 .. 0.85

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 6.4e-06
   TIGR01133 153 aekivlvgnpvreeirelpaaka.dlkarenkltilvlGGSqGAkilNelvpkalaklaek..lilviiqagkqdlekvkrayselgiaekieefidndmaaaykaadLvIsRAGAstvaElaavglPailiPypsaaddqyyNakeledagaglvleqkellteklveklkkllkdearleemaeaaqklak 342
                 a+++++vg p  ++ +++  ++  +++   ++  +l+  G  GA +   + + ++ +l+++  +  v++   k+d+ +++++  +      i ++ ++d++   +   + ++  G ++v+E a  g+P +  P+     dq+ N     + g g+ l+ k  + + l++++k+ l +++ + +     q++++
  MMETSP1137-20121227|2867_1 279 ASNVQFVGHPLSRPAAPIGDENVrEFADGATNGLVLISLGNHGAWFNPSRTLHLAEALRDAlaGVHVVWKVSKADARDLANFTPSS-TMMLISWMDQQDILGHPN-CRVFVTHGGHNSVQEAAFHGVPVVGTPLL---VDQFDNLVRPLERGFGQTLDHKTFTVDDLIRAIKAALHEPKYRXNA----QQIKQ 462
                 5678999999999999998888888888999999999999****988888999999999987777899999999999999999997.599999999988888766.99**************************9...589999999999*************************998888433....33333 PP

>> TIGR00661  MJ1255: conserved hypothetical protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   3.5e-05     0.047     247     300 ..     382     433 ..     356     449 .. 0.81

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 3.5e-05
   TIGR00661 247 saeavitsGGfelisEALalgkpllvvPvlgqfEqvsnAvklekLGlgevleyk 300
                 ++   +t+GG++ + EA   g p++  P+l   +q  n v+  + G+g+ l++k
  MMETSP1137-20121227|2867_1 382 NCRVFVTHGGHNSVQEAAFHGVPVVGTPLL--VDQFDNLVRPLERGFGQTLDHK 433
                 8999************************87..3455666666666666666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (678 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       154  (0.0375427); expected 82.0 (0.02)
Passed bias filter:                      131  (0.0319356); expected 82.0 (0.02)
Passed Vit filter:                        21  (0.00511945); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.48u 0.17s 00:00:00.65 Elapsed: 00:00:00.91
# Mc/sec: 983.39
//
Query:       MMETSP1137-20121227|2868_1  [L=169]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (169 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        58  (0.0141394); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.17s 00:00:00.35 Elapsed: 00:00:00.40
# Mc/sec: 557.65
//
Query:       MMETSP1137-20121227|2869_1  [L=329]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00051   17.8   1.5    0.00089   17.0   0.3    1.7  2  TIGR03008 pepcterm_CAAX: CAAX prenyl protease-related protein


Domain annotation for each model (and alignments):
>> TIGR03008  pepcterm_CAAX: CAAX prenyl protease-related protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0     0.095   3.9e+02     109     130 ..     129     149 ..     111     206 .. 0.63
   2 !   17.0   0.3   2.2e-07   0.00089     126     207 ..     240     321 ..     229     326 .. 0.83

  Alignments for each domain:
  == domain 1    score: -1.4 bits;  conditional E-value: 0.095
   TIGR03008 109 alirivliafRllGatlvvPvl 130
                 +  r +l+  R++ a l+v v+
  MMETSP1137-20121227|2869_1 129 TSSRLTLL-ERVIQACLLVKVA 149
                 55555555.5666666666554 PP

  == domain 2    score: 17.0 bits;  conditional E-value: 2.2e-07
   TIGR03008 126 vvPvlEElFwRsfllrllqkkdfesvpvgrlawksflavtilFgleHk...livagllAGlayallllrtgsivacvlaHavtng 207
                   P+lEE  +R+ +l  l    + +  +  +a +s+++ ++ F   H    ++ a+++ Gl+y l +l tg++  ++ +H   n 
  MMETSP1137-20121227|2869_1 240 CAPLLEETIFRGLVLIKL-CCRLGA--APAVALTSLCFGSMHFDAAHPnylQVAAATVGGLVYGLSFLLTGRLSVPIATHVAQNA 321
                 469*********988777.233444..4568899**********9996333678999***********************98886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (329 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       112  (0.0273038); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.27u 0.14s 00:00:00.41 Elapsed: 00:00:00.59
# Mc/sec: 736.01
//
Query:       MMETSP1137-20121227|2870_1  [L=634]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.1e-25   88.2   0.0    1.9e-25   87.5   0.0    1.2  1  TIGR01237 D1pyr5carbox2: putative delta-1-pyrroline-5-carboxylate dehydrogenase
    8.7e-19   65.1   0.0    1.5e-18   64.3   0.0    1.3  1  TIGR01804 BADH: betaine aldehyde dehydrogenase
    3.6e-17   59.9   0.0    2.6e-16   57.1   0.0    1.9  1  TIGR01238 D1pyr5carbox3: delta-1-pyrroline-5-carboxylate dehydrogenase
    2.8e-16   57.0   0.0    4.9e-16   56.2   0.0    1.3  1  TIGR01236 D1pyr5carbox1: 1-pyrroline-5-carboxylate dehydrogenase
    3.2e-16   57.1   0.0    5.3e-16   56.3   0.0    1.3  1  TIGR01780 SSADH: succinate-semialdehyde dehydrogenase
    1.4e-15   54.7   0.0      2e-15   54.2   0.0    1.1  1  TIGR02299 HpaE: 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase
    8.4e-13   45.7   0.0    2.5e-12   44.1   0.0    1.7  1  TIGR03240 arg_catab_astD: succinylglutamic semialdehyde dehydrogenase
    9.2e-13   45.4   0.0    4.7e-10   36.5   0.0    2.2  2  TIGR03250 PhnAcAld_DH: putative phosphonoacetaldehyde dehydrogenase
    1.7e-12   44.7   0.0    3.2e-12   43.8   0.0    1.3  1  TIGR03374 ABALDH: 1-pyrroline dehydrogenase
    7.8e-11   39.1   0.0    1.5e-10   38.2   0.0    1.4  2  TIGR01722 MMSDH: methylmalonate-semialdehyde dehydrogenase (acylating)
    3.4e-10   36.9   0.0    2.5e-09   34.1   0.0    2.0  2  TIGR03216 OH_muco_semi_DH: 2-hydroxymuconic semialdehyde dehydrogenase


Domain annotation for each model (and alignments):
>> TIGR01237  D1pyr5carbox2: putative delta-1-pyrroline-5-carboxylate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.5   0.0     5e-28   1.9e-25     135     466 ..     241     576 ..     226     595 .. 0.79

  Alignments for each domain:
  == domain 1    score: 87.5 bits;  conditional E-value: 5e-28
   TIGR01237 135 dfleyyaremikla..kskevlsieGeknrylyiplGvavvispwnfplailvGmtvapivtGncvvlkpaeaatviaaklveileeaGlpkGvlqfvpGkGsevGeylvdhpktrlitftGsrevGlriyedaakvqpGqkhlkrviaelGGkda.vivdesadieqavaaavtsafGfaGqkcsaasrvvvlekvydevverfveatkslkvgktdeadvqvgpvidqksfdkikeyielgka..egklvlg.....gedddskGyfikptif.......kdvdrkarlaqeeifGp..vvavlrakdfdealeiansteygltGgvisnsrerierakaefevGnlyf 466
                  f+e y+ + +++   + ++  + +G++   + +p G   vi+p+nfpl i +  t +++  Gn  + k  ++ +++  ++  +l++ Glpk  ++++   G ++ e lv+  + r+  ftGs+ v  ++ +             rv  e  G d  ++  + a+++  v    + a+ f+Gqkcsa s ++ +ek  d    ++v++  +   +++ e +  ++p++   s  +i+e+ie + +   +kl+ g     g + ++    ++pt +          d + ++a  e+fGp  v++  r  + +  l++ n  e  lt gv+sn  + i++   +   G  y 
  MMETSP1137-20121227|2870_1 241 PFMENYSCDQVRFLarSFGVPGDHDGQTTTGIRMPFGGVAVITPFNFPLEICALQTLSALFMGNQPLTKVDSKVAIVMEQFLRMLHHVGLPKTDVDYIYSDGPVMNELLVK-GNCRMCLFTGSQGVAEKLTQ---------DLKGRVKLEDAGFDWkILGPDPAEVDFVVWQSDQDAYAFSGQKCSAQSMLIAHEKWMDL---GIVDKLAAAAATRSLE-NLTLSPILT-WSTPRIMEHIEACLKipGAKLAFGgkpleGHSIPDCYGAVEPTAVfipiesiLASDENFKVATRELFGPfqVITSFREGQTQLVLDLVNRMENHLTAGVVSNDLQFIQQILGNTINGTTYA 576
                 589888766666542344677899*************999***************************************************************99999986.689*********99887754.........4445898998888861556688*********************************9995...4455544444444444.789999885.7899*******8755226799999555442222222224677743122211145699************76788889999999********************999999877666666665 PP

>> TIGR01804  BADH: betaine aldehyde dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.3   0.0   4.1e-21   1.5e-18     128     430 ..     270     575 ..     260     601 .. 0.83

  Alignments for each domain:
  == domain 1    score: 64.3 bits;  conditional E-value: 4.1e-21
   TIGR01804 128 kvrreplGvvvgigawnyPlliaswksaPalaaGnalvlkPseitPltalkvaelleeaGlPkGvfnvvlGkgaevGeelvehkdvakvsltGgvetGkkimaaaaeelkkvtlelGGksPlivfdd.adlelavdqallanffsaGqvcsnGtrvlvekkikekflaklvervkkiklGdgfdeetelGPlisaehrdkvlkyiekg.keegaklaiGGkvpeeeeldeGf.fiePt.vfa......dvtddmtivreeifGPvlsvlefeseee..vikrandteyGlaagvftadleraervaerlkaGtvw 430
                   +r p+G v+ i+++n+Pl i + ++  al +Gn  + k      +   +  ++l+ +GlPk  ++ +  +g  v +el ++ +     +tG+     k+ ++      +v le  G + +i+  d a+++  v q+ + ++  +Gq cs+ + ++ ++k  +     +v++  +  +  ++++ t l P+++ +   +++++ie   k  gakla GGk +e +++ +    +ePt vf         +++ +++  e+fGP   + +f + +   v+++ n  e  l+agv+++dl+  +++  +   Gt +
  MMETSP1137-20121227|2870_1 270 TGIRMPFGGVAVITPFNFPLEICALQTLSALFMGNQPLTKVDSKVAIVMEQFLRMLHHVGLPKTDVDYIYSDGP-VMNELLVKGNCRMCLFTGSQGVAEKLTQDLKG---RVKLEDAGFDWKILGPDpAEVDFVVWQSDQDAYAFSGQKCSAQSMLIAHEKWMDL---GIVDKLAAAAATRSLENLT-LSPILTWST-PRIMEHIEAClKIPGAKLAFGGKPLEGHSIPDCYgAVEPTaVFIpiesilASDENFKVATRELFGPFQVITSFREGQTqlVLDLVNRMENHLTAGVVSNDLQFIQQILGNTINGTTY 575
                 55899************************************99999*9************************65.666666778899999***97777666655544...5779********9975549****************************99987764...5777777777788887665.889998765.57888887763779***************998653588985554111111456789*****************9764323999**********************999988888765 PP

>> TIGR01238  D1pyr5carbox3: delta-1-pyrroline-5-carboxylate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.1   0.0     7e-19   2.6e-16     159     460 ..     274     576 ..     242     595 .. 0.80

  Alignments for each domain:
  == domain 1    score: 57.1 bits;  conditional E-value: 7e-19
   TIGR01238 159 kalGavvcispwnfplaiftGqiaaalaaGntviakpaeqtsliaaravellqeaGvpagviqllpGrGedvGaaltsderiaGviftGstevarlinkalakredapvpliaetGGqnamivdstalaeqvvadvlasafdsaGqrcsalrvlcvqedvadr.vltlikGamdelkvgkpir..lttdvGpvidaeakqnllahiekmkakakkvaqvkledd.vesekgt.fva..ptlfelddldelkkevfGpvlhvvrykadeldkvvdkinakGygltlGvhsrieetvrqiekrakvGnvyv 460
                  + G v +i+p+nfpl i   q  +al  Gn  ++k   + +++  + + +l+  G+p + +  +   G  v   l  + + +  +ftGs  va+++ + l  r + +     ++G    ++    a  + vv    + a++ +Gq+csa  +l+  e+  d  +++ +  a     + + ++    t   p i ++ +  l+    k+   +k +      d   ++e +  f++   +l   ++++   +e fGp   +  ++  + + v+d +n     lt Gv s   + ++qi ++   G  y 
  MMETSP1137-20121227|2870_1 274 MPFGGVAVITPFNFPLEICALQTLSALFMGNQPLTKVDSKVAIVMEQFLRMLHHVGLPKTDVDYIYSDGP-VMNELLVKGNCRMCLFTGSQGVAEKLTQDLKGRVKLE-----DAGFDWKILGPDPAEVDFVVWQSDQDAYAFSGQKCSAQSMLIAHEKWMDLgIVDKLAAAAATRSLENLTLspILTWSTPRIMEHIEACLKIPGAKLAFGGKPLEGHSIPDCyGAVEPTAvFIPieSILASDENFKVATRELFGPFQVITSFREGQTQLVLDLVNRMENHLTAGVVSNDLQFIQQILGNTINGTTYA 576
                 358999***************************************************************9.88888889999*******************9997765.....66666666667889999****************************998852556666655544444333211345556666666666666666666666676666666555334444431432113455667899999***************************************9999999999988888875 PP

>> TIGR01236  D1pyr5carbox1: 1-pyrroline-5-carboxylate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.2   0.0   1.3e-18   4.9e-16     172     493 ..     277     594 ..     259     631 .. 0.74

  Alignments for each domain:
  == domain 1    score: 56.2 bits;  conditional E-value: 1.3e-18
   TIGR01236 172 GfvaaisPfnftaiaanlagaPal.mGnvvvWkPsktavlsnyllmkileeaGlPpgvinfvpadgvkvsdv.vladkdlaalhftGstavfkelwkkvasnldkyrnfPrivGetGGkdfvlvhp.sadveevvaatirgafeyqGqkcsaasrlyvpkslwkelkeellaelkkvkvgdvddlssfmgavideksfakivkviekakkdpeeleilaGGkyddsk....Gy.fvePtv.......veskdPkeklmkeeifGPvltvyvydddkykeilevvdstskyaltGavfakdreaieeaekklrfaaGnfyindkstGavvgqqpfGGa 493
                 G va i+Pfnf      l +  al mGn  + k  + +++     +++l+  GlP+  ++++ +dg ++++  v+ + ++    ftGs  v ++l + ++          r+  e  G d+ +  p  a+v+ vv    + a+ + Gqkcsa s l +++ +w +l   ++++l+    +    l++ + + i   s  +i++ ie   k p   +++ GGk  + +     y  vePt        +++ d + k+ + e+fGP   +  + + + + +l++v++  +  lt  v+++d + i++   +  + +    i  ++t a   q +fG +
  MMETSP1137-20121227|2870_1 277 GGVAVITPFNFPLEICALQTLSALfMGNQPLTKVDSKVAIVMEQFLRMLHHVGLPKTDVDYIYSDGPVMNELlVKGNCRM--CLFTGSQGVAEKLTQDLKG---------RVKLEDAGFDWKILGPdPAEVDFVVWQSDQDAYAFSGQKCSAQSML-IAHEKWMDLG--IVDKLAAA--AATRSLENLTLSPILTWSTPRIMEHIEACLKIP-GAKLAFGGKPLEGHsipdCYgAVEPTAvfipiesILASDENFKVATRELFGPFQVITSFREGQTQLVLDLVNRMEN-HLTAGVVSNDLQFIQQILGNTINGTTYAGIRARTT-AAPQQHWFGPS 594
                 6799*******887788999888769*******9888888888999*********************9998614444455..47******99999888876.........5567899999998876269************************976.8899998874..33333332..23345555555666678899********99999.889999999654431111343588885233323357889999999**************************98765.69************998766555444444444444.44566677753 PP

>> TIGR01780  SSADH: succinate-semialdehyde dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.3   0.0   1.4e-18   5.3e-16      85     401 ..     241     565 ..     223     579 .. 0.81

  Alignments for each domain:
  == domain 1    score: 56.3 bits;  conditional E-value: 1.4e-18
   TIGR01780  85 syleWfaeeakrvyGdv..iaslqsdkrllvikqPvGvaaiitPWnfPaamitrkagaalaaGctvvvkPaeqtPlsalalarlaekaGvPkgvlnvvtssaeevGkvltssPlvrkvsftGstavGkillkqsastvkkvslelGGnaPlivfdd.adldqavegalaskfrnagqtcvcanrlyvhesvyd.efakklaekvkklkvGdGldegvtvGplinekavekvekhiedave.kGakvvvgGdkreek...ggn.ffePt.......vlsdvtadmlvakeetfGPlapvfkfdd..eeevvalandtevGlaayffskdlakiirv 401
                  ++e ++ +  r   +   +++ +  +    i+ P G +a+itP+nfP  + + ++ +al  G   + k +++  ++  ++ r+ ++ G+Pk  ++ + s++  +  +l  +   r   ftGs  v   l ++      +v le  G    i+ +d a++d  v +     +   gq c     l+ he+ +d  +++kla +  +      l++  t  p++   +  ++ +hie  ++  Gak+  gG+  e +   +++  +ePt        +   +++ +va+ e fGP   + +f +  ++ v++l n  e  l+a + s+dl+ i ++
  MMETSP1137-20121227|2870_1 241 PFMENYSCDQVRFLARSfgVPGDHDGQTTTGIRMPFGGVAVITPFNFPLEICALQTLSALFMGNQPLTKVDSKVAIVMEQFLRMLHHVGLPKTDVDYIYSDGPVMN-ELLVKGNCRMCLFTGSQGVAEKLTQDLKG---RVKLEDAGFDWKILGPDpAEVDFVVWQSDQDAYAFSGQKCSAQSMLIAHEKWMDlGIVDKLAAAAAT----RSLEN-LTLSPILTW-STPRIMEHIEACLKiPGAKLAFGGKPLEGHsipDCYgAVEPTavfipieSILASDENFKVATRELFGPFQVITSFREgqTQLVLDLVNRMENHLTAGVVSNDLQFIQQI 565
                 5788888888887776523677888899999**********************************************************************98775.56667789***********9999877665...5669999999888876559********************************9994477888777654....55654.678898876.56899*****999846********6544321113332467763221112133467899**************999862256799******************9887665 PP

>> TIGR02299  HpaE: 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.2   0.0   5.2e-18     2e-15     125     421 ..     265     561 ..     243     583 .. 0.81

  Alignments for each domain:
  == domain 1    score: 54.2 bits;  conditional E-value: 5.2e-18
   TIGR02299 125 deflnytvrvpvGvvglitPwnaPfmlstwkiaPalaaGntvvlkpaelsPltaarlaelvkeaglPdGvlnlvhGfGeeaGkalvehpavkavsfvGetatGsaimrngadtlk.rlslelGGksPvivfdd.adleraldavvfmifslnGerctassrllvqesiae.dfveklkervkairvGdPldeetevGPlikeehlakvlsylevaek.eGatilvGgkkake.....vldkelsrGnyvaPtvlvdadnkmriaqeeifGPvltvipfkdeee..alelandieyGlagyvwtedvgr 421
                 d  +   +r+p G v++itP+n P+ + + +   al +Gn  + k      +   ++ +++++ glP+  ++ +   G    + lv+  + ++  f+G+    +++ ++    lk r++le  G +  i+  d a+++  +       +++ G++c+a+s l+ +e+ ++   v+kl + +        l++ t + P++      ++++++e++ k  Ga+++ Ggk +++       ++   +  ++    ++  d++ ++a  e+fGP+ ++ +f++ +   +l+l n +e  l++ v ++d++ 
  MMETSP1137-20121227|2870_1 265 DGQTTTGIRMPFGGVAVITPFNFPLEICALQTLSALFMGNQPLTKVDSKVAIVMEQFLRMLHHVGLPKTDVDYIYSDGPVMNELLVKG-NCRMCLFTGSQGVAEKLTQD----LKgRVKLEDAGFDWKILGPDpAEVDFVVWQSDQDAYAFSGQKCSAQSMLIAHEKWMDlGIVDKLAAAA----ATRSLENLT-LSPILTW-STPRIMEHIEACLKiPGAKLAFGGKPLEGhsipdCYGAVEPTAVFIPIESILASDENFKVATRELFGPFQVITSFREGQTqlVLDLVNRMENHLTAGVVSNDLQF 561
                 45567789************************************************************************99999975.689999****9988888776....555999**999988777655388877777777789******************988834666666544....445777665.7887765.5689999999986538*********99985222222333334445544456678889******************98765237899************9999875 PP

>> TIGR03240  arg_catab_astD: succinylglutamic semialdehyde dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.1   0.0   6.8e-15   2.5e-12     131     424 ..     274     573 ..     258     608 .. 0.77

  Alignments for each domain:
  == domain 1    score: 44.1 bits;  conditional E-value: 6.8e-15
   TIGR03240 131 rphGvlavfGpynfpGhlpnGhivpallaGntvvfkpseltplvaeetvklwekaGlpaGvlnlvqGaretGkalaaeedidGllftGssntGallhrqlagrpekilalelGGnn.plvveevkdidaavhlivqsafisaGqrctcarrllvkdgaeGdallerlvevaerltvgkydaepqpflG.avisekaakellaaqekllalggksllelkqlee......eaalltp..giidvtevaevpdeeyfgpllkvlrykd..fdealaeanntrfGlaaGllsddrelydkflleiraGi 424
                  p G +av+ p+nfp  +     + al+ Gn  + k      +v e+ ++++++ Glp+  ++ +  +    + l  + +    lftGs    ++l + l gr      le  G +  ++  + +++d +v +  q a+  +Gq+c+    l+ +++ +   ++++l + a++  +++    p      + i e   ++ l+     la ggk l   +  +        a ++ p  +i+   e  +v   e+fgp+  ++ +++   +  l+  n  +  l+aG++s+d +  +++l ++  G 
  MMETSP1137-20121227|2870_1 274 MPFGGVAVITPFNFPLEICALQTLSALFMGNQPLTKVDSKVAIVMEQFLRMLHHVGLPKTDVDYIYSDGPVMNELLVKGNCRMCLFTGSQGVAEKLTQDLKGRV----KLEDAGFDwKILGPDPAEVDFVVWQSDQDAYAFSGQKCSAQSMLIAHEKWMDLGIVDKLAAAAATRSLENLTLSPILTWStPRIME-HIEACLKIPGAKLAFGGKPLEGHSIPDCygavepTAVFI-PieSILASDENFKVATRELFGPFQVITSFREgqTQLVLDLVNRMENHLTAGVVSNDLQFIQQILGNTINGT 573
                 5899**************************************************************************************************95....57776666155557899*********************97776666666666789******9999999988877764444144444.445566666666777777765444333310000033333.22255555566678899*****988887765115667899****************999999887766654 PP

>> TIGR03250  PhnAcAld_DH: putative phosphonoacetaldehyde dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.5   0.0   1.3e-12   4.7e-10     135     290 ..     272     425 ..     247     442 .. 0.90
   2 !    6.6   0.0    0.0015      0.56     363     422 ..     509     570 ..     491     579 .. 0.81

  Alignments for each domain:
  == domain 1    score: 36.5 bits;  conditional E-value: 1.3e-12
   TIGR03250 135 lrepllgvisaitpfnhplnqvahkvapaiatnnrvvlkpsekvplsallladllyeaGlpeemlqvvtGdpreiadelitdehvdlvtftGgvaiGkliaakagykravlelGGndplivled.adldraadlavkGsyknsGqrctavkrilvqe 290
                 +r p+ g ++ itpfn pl+  a +   a+   n+ + k   kv +    ++ +l+  Glp+  ++ +  d   + +el+++ +  +  ftG+  +  ++++  +  r+ le  G d  i+  d a++d     + + +y  sGq+c+a   ++ +e
  MMETSP1137-20121227|2870_1 272 IRMPFGG-VAVITPFNFPLEICALQTLSALFMGNQPLTKVDSKVAIVMEQFLRMLHHVGLPKTDVDYIYSDG-PVMNELLVKGNCRMCLFTGSQGVAEKLTQDLKG-RVKLEDAGFDWKILGPDpAEVDFVVWQSDQDAYAFSGQKCSAQSMLIAHE 425
                 5777765.678********************************************************99986.57789999*******************999875.7889999999999887779**********************988777776 PP

  == domain 2    score: 6.6 bits;  conditional E-value: 0.0015
   TIGR03250 363 rvdpelalvreetfGpvspvirfkdidda..irisnstayglssgvctnrldaitkliaele 422
                   d++ ++  +e fGp   +  f++ +    + + n  +  l++gv +n+l+ i++++ +  
  MMETSP1137-20121227|2870_1 509 ASDENFKVATRELFGPFQVITSFREGQTQlvLDLVNRMENHLTAGVVSNDLQFIQQILGNTI 570
                 457889999**************987765347899*******************99986654 PP

>> TIGR03374  ABALDH: 1-pyrroline dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.8   0.0   8.5e-15   3.2e-12     127     420 ..     265     565 ..     250     579 .. 0.79

  Alignments for each domain:
  == domain 1    score: 43.8 bits;  conditional E-value: 8.5e-15
   TIGR03374 127 eghtsmirrdpvgvvasiapwnyplmmaawklapalaagncvvlkpseitplta.lklaelakdilpagvvnvlfgrgktvgdaltghekvrmvsltgsiatgehilahtaasikrthmelggkapvivfddadidavvegvrtfgfynagqdctaacriyaqrgiyd.elveklgkavatlkigapedestelgplsslahlervsaaveeakalshikvitggekvkgkgy...y..faptll......a.gakqddaivqkevfgpvvsitvfdde..eqvvrwandsryglassvwtkdvgrahrl 420
                 +g+t+   r p g va i+p+n+pl ++a +   al  gn  + k   +  +     l  l +  lp   v+ ++  g  + + l  + + rm  +tgs    e++ +     +k      g    ++  d a++d vv       +  +gq c+a   + a     d  +v+kl +a at  +     e+  l p+ + +   r+++ +e +  ++  k+  gg+  +g+     y   +pt +         + ++ ++  +e+fgp   it+f +   + v++  n  +  l++ v ++d+   +++
  MMETSP1137-20121227|2870_1 265 DGQTTTGIRMPFGGVAVITPFNFPLEICALQTLSALFMGNQPLTKVDSKVAIVMeQFLRMLHHVGLPKTDVDYIYSDGPVMNELL-VKGNCRMCLFTGSQGVAEKLTQDLKGRVKLED--AGFDWKILGPDPAEVDFVVWQSDQDAYAFSGQKCSAQSMLIAHEKWMDlGIVDKLAAAAATRSL-----ENLTLSPILTWS-TPRIMEHIEACLKIPGAKLAFGGKPLEGHSIpdcYgaVEPTAVfipiesIlASDENFKVATRELFGPFQVITSFREGqtQLVLDLVNRMENHLTAGVVSNDLQFIQQI 565
                 6788888899*******************************999987666665505566666677*************9777666.56789*************99888877776543..344555777899***************************999988888469******9998655.....7788***99986.589************************9864332323456643112111202334456889*************8751145889999999999999999998766655 PP

>> TIGR01722  MMSDH: methylmalonate-semialdehyde dehydrogenase (acylating)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.0       2.1   7.7e+02      13      48 ..      56      91 ..      49     102 .. 0.80
   2 !   38.2   0.0   4.1e-13   1.5e-10     131     386 ..     270     528 ..     264     546 .. 0.76

  Alignments for each domain:
  == domain 1    score: -3.7 bits;  conditional E-value: 2.1
   TIGR01722 13 ksdkyipvsnpatnevlakvaeasaeevdaavasar 48
                k+++ +p+ +p+++e    v+ +s ee+   v   r
  MMETSP1137-20121227|2870_1 56 KTARQTPILDPLNGESFLMVPDTSLEEIGPFVRRLR 91
                457788999*******99999999999987776655 PP

  == domain 2    score: 38.2 bits;  conditional E-value: 4.1e-13
   TIGR01722 131 ysirqplGvvaGitpfnfpamiplwmfplaiacGntfvlkpsekvpsaavklaellseaGapdGvlnvvhGdkeavdrllehpdvkavsfvGsvavgeyiyetgsahgkrvqalaGaknhmvvlpd.adkeaaldalvgaavGaaGqrcmaisaavlvGaakelve.eireraekvrvgagddp..gaelGplitkqakervasliasgak.eGaevlldGrgykveGyee........GnfvGitllervkpdmkiykeeifGpvlvv 386
                   ir+p+G va itpfnfp  i       a+  Gn  + k   kv     +  ++l++ G+p+  ++ ++ d   +++ll + + +   f Gs+ v+e + +       rv+      +  ++ pd a+ + ++ +    a+  +Gq+c a s+ ++    +++++  i+++++    +a + +  +  l p++t +   r+++ i+++ k  Ga++ + G+ ++ +  ++          f+ i  +     + k+   e+fGp  v+
  MMETSP1137-20121227|2870_1 270 TGIRMPFGGVAVITPFNFPLEICALQTLSALFMGNQPLTKVDSKVAIVMEQFLRMLHHVGLPKTDVDYIYSDGPVMNELLVKGNCRMCLFTGSQGVAEKLTQD---LKGRVKLEDAGFDWKILGPDpAEVDFVVWQSDQDAYAFSGQKCSAQSMLIA---HEKWMDlGIVDKLA---AAAATRSleNLTLSPILTWS-TPRIMEHIEACLKiPGAKLAFGGKPLEGHSIPDcygaveptAVFIPIESILASDENFKVATRELFGPFQVI 528
                 679*******************9999999********************************************************************987554...4457887777788899999978999********************999885...56777623555444...44444331144567877765.45777777776653577777776655443333311001111345555555555666677777777776555 PP

>> TIGR03216  OH_muco_semi_DH: 2-hydroxymuconic semialdehyde dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.0      0.13        49       3      69 ..      48     115 ..      47     126 .. 0.81
   2 !   34.1   0.0   6.8e-12   2.5e-09     132     424 ..     268     561 ..     252     576 .. 0.80

  Alignments for each domain:
  == domain 1    score: 0.1 bits;  conditional E-value: 0.13
   TIGR03216   3 nfidGafvesektfedispvdgkviaevaeagkeevdaavkaaraalk.gewgklsvaeraellkkva 69 
                 n + G++v+++++    +p++g+ + +v +++ ee+   v+  r+  + g    +   +r ++l +v 
  MMETSP1137-20121227|2870_1  48 NLVGGEWVKTARQTPILDPLNGESFLMVPDTSLEEIGPFVRRLRECPRsGLHNPIKNVDRYNMLGAVM 115
                 6799*******************************999999888875415556677788888887764 PP

  == domain 2    score: 34.1 bits;  conditional E-value: 6.8e-12
   TIGR03216 132 lnyavrkplGvvgvispwnlplllltwkvapalacGntvvvkpseetpatatllaevmeevGvpkGvynvvhGfGpdsaGefltrhpdvdaitftGetrtGeaimkaaadgvkevslelGGknaaivfad.adldaavegvlrsaflntGqvclgtervyverpifd.rfvaalkekaeklklG.vpedeaaelGpliskehrdkvlsyyklaveeGatvvtGGGvpelgdelaeGa.yvqptiwtglpdsarvvkeeifGpvchvapfdse..eeviarandtayGlaasvwtedlsr 424
                     +r p G v+vi+p+n+pl + + +   al +Gn  + k   +       +  ++++vG+pk   + ++  Gp    e+l+ + +     ftG     e + +        v le  G +  i+  d a++d +v    + a++ +Gq c +   +  + + +d  +v +l+++a + +l   +  +  +  +    eh +  l         G + + G  +p+   + +  a ++        +++ +v + e+fGp   ++ f +   + v++++n  +  l+a v ++dl+ 
  MMETSP1137-20121227|2870_1 268 TTTGIRMPFGGVAVITPFNFPLEICALQTLSALFMGNQPLTKVDSKVAIVMEQFLRMLHHVGLPKTDVDYIYSDGPVM-NELLV-KGNCRMCLFTGSQGVAEKLTQDLKG---RVKLEDAGFDWKILGPDpAEVDFVVWQSDQDAYAFSGQKCSAQSMLIAHEKWMDlGIVDKLAAAAATRSLEnLTLSPILTWSTPRIMEHIEACLKIPGAKLAFGGKPLEGHSIPDCYGAVEPTAvFIPIESILASDENFKVATRELFGPFQVITSFREGqtQLVLDLVNRMENHLTAGVVSNDLQF 561
                 45679*************************************99999999999999****************999975.46665.56788999***98877776665443...5789*********9998689********************9988877766666625788888776655543133444444444444678888888888888888888888999998777665551554445566788899****************8651156899**************999975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (634 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        97  (0.023647); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                        19  (0.00463189); expected 4.1 (0.001)
Passed Fwd filter:                        11  (0.00268162); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.61u 0.15s 00:00:00.76 Elapsed: 00:00:00.63
# Mc/sec: 1328.27
//
Query:       MMETSP1137-20121227|2871_1  [L=327]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.3e-13   48.2   0.0    1.7e-13   47.8   0.0    1.1  1  TIGR03377 glycerol3P_GlpA: glycerol-3-phosphate dehydrogenase, anaerobic, A subunit


Domain annotation for each model (and alignments):
>> TIGR03377  glycerol3P_GlpA: glycerol-3-phosphate dehydrogenase, anaerobic, A subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.8   0.0   4.2e-17   1.7e-13     251     379 ..      36     165 ..      26     223 .. 0.79

  Alignments for each domain:
  == domain 1    score: 47.8 bits;  conditional E-value: 4.2e-17
   TIGR03377 251 gdtisllGttsekvddiddleveqeevdellde.gakliPalaeaRilrafaGvRPLvasdddesg..reisRgivlldheerdgleGlisivGGklttyRlmaekvtdvvc...kklgndkecrtaeeplpgse 379
                     ++ Gtt++  +   + +++qee d +l       + +  ++ +  a++G+RPLv+++d ++g  +++sR+ v+     +   +Gl++i GGk ttyR m++ ++d+     + l + k+c t+e  l+g++
  MMETSP1137-20121227|2871_1  36 WLGSTVAGTTDKPGEASFSPSPTQEETDFILYDaTGCCVSHCVRQSVRAAWSGIRPLVRNPDAPEGdtKSLSREHVV-----ERLPSGLVTIAGGKWTTYRKMSQDAVDACIssnAALSHAKPCGTHELQLIGAD 165
                 55568899***999999999999****98775404455666666667779*************99988999**8665.....44568**********************864222579*************9985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (327 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       106  (0.0258411); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.28u 0.16s 00:00:00.44 Elapsed: 00:00:00.38
# Mc/sec: 1135.80
//
Query:       MMETSP1137-20121227|2872_1  [L=1091]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1091 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       143  (0.034861); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.62u 0.11s 00:00:00.73 Elapsed: 00:00:01.05
# Mc/sec: 1371.43
//
Query:       MMETSP1137-20121227|2873_1  [L=91]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (91 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        63  (0.0153584); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.30
# Mc/sec: 400.37
//
Query:       MMETSP1137-20121227|2874_1  [L=678]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (678 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       180  (0.043881); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.14s 00:00:00.59 Elapsed: 00:00:00.52
# Mc/sec: 1720.93
//
Query:       MMETSP1137-20121227|2875_1  [L=935]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (935 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        63  (0.0153584); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.57u 0.15s 00:00:00.72 Elapsed: 00:00:00.55
# Mc/sec: 2243.81
//
Query:       MMETSP1137-20121227|2876_1  [L=809]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (809 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       101  (0.0246221); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.48u 0.15s 00:00:00.63 Elapsed: 00:00:00.77
# Mc/sec: 1386.74
//
Query:       MMETSP1137-20121227|2877_1  [L=401]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (401 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        86  (0.0209654); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.15s 00:00:00.43 Elapsed: 00:00:00.38
# Mc/sec: 1392.83
//
Query:       MMETSP1137-20121227|2878_1  [L=321]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (321 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       218  (0.0531448); expected 82.0 (0.02)
Passed bias filter:                      109  (0.0265724); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.17s 00:00:00.45 Elapsed: 00:00:01.03
# Mc/sec: 411.34
//
Query:       MMETSP1137-20121227|2879_1  [L=450]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00092   16.2   0.0       0.15    8.9   0.0    2.3  2  TIGR03866 PQQ_ABC_repeats: PQQ-dependent catabolism-associated beta-propeller protein


Domain annotation for each model (and alignments):
>> TIGR03866  PQQ_ABC_repeats: PQQ-dependent catabolism-associated beta-propeller protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.9   0.0   0.00062       2.6      42      73 ..     118     148 ..      76     156 .. 0.66
   2 !    8.9   0.0   3.7e-05      0.15      20     184 ..     180     348 ..     161     352 .. 0.77

  Alignments for each domain:
  == domain 1    score: 4.9 bits;  conditional E-value: 0.00062
   TIGR03866  42 rPrGitlskdgkllyvcasdsdavqvldaete 73 
                   rGi++sk g+  +v+asd+ +v++ ++++ 
  MMETSP1137-20121227|2879_1 118 FVRGIAFSKSGHH-FVSASDDKTVKLWSSAAA 148
                 46*******9975.8*********99887665 PP

  == domain 2    score: 8.9 bits;  conditional E-value: 3.7e-05
   TIGR03866  20 dntisvidletlevvktlkvGerP.rGitlskdgkllyvcasdsdavqvldaeteevlkelpsGedPelfvlepdgkllyianeddalvtvvdiekrkvlaeidvGvePeGlav..sPdgklvvntsettnmahf.idtetlkivdnvlvdarPraaeftadgkelwvs 184
                 + t+ + d+++ + ++ ++ G+     +++++ ++ l+ c+s + +  + d +t + ++++     P+ +  +p + + ++   +d  +   d++k      +++G     l+v  sP g+  v+ s    +  +   ++  + v  +   +r  ++ ++ d++ l+  
  MMETSP1137-20121227|2879_1 180 GATVLLWDTARSDPIQSFEWGADAlTRVKFNPAQHNLLGCVSTDRSFTLYDISTGSATQKMTMQTRPNDVCWNPMQPMHFTLASEDHELYTFDMRKLDHAIAVHTGHVSAVLSVdySPTGQQFVSGSYDKTLRVWdTGAHAATHVYHTKRMQRLFSVCWSMDASYLFSG 348
                 567777788888888888888765246899999999**************************************99999987777777777899999999999999888777765599999999999877776661223334445555666666677777777777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (450 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       134  (0.032667); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.16s 00:00:00.49 Elapsed: 00:00:00.57
# Mc/sec: 1024.05
//
Query:       MMETSP1137-20121227|2880_1  [L=409]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (409 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       187  (0.0455875); expected 82.0 (0.02)
Passed bias filter:                      107  (0.0260848); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.17s 00:00:00.53 Elapsed: 00:00:00.30
# Mc/sec: 1799.45
//
Query:       MMETSP1137-20121227|2883_1  [L=177]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (177 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        52  (0.0126767); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.10s 00:00:00.26 Elapsed: 00:00:00.36
# Mc/sec: 648.95
//
Query:       MMETSP1137-20121227|2884_1  [L=255]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (255 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        75  (0.0182838); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.12s 00:00:00.34 Elapsed: 00:00:00.33
# Mc/sec: 1019.92
//
Query:       MMETSP1137-20121227|2885_1  [L=396]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (396 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       323  (0.0787421); expected 82.0 (0.02)
Passed bias filter:                      110  (0.0268162); expected 82.0 (0.02)
Passed Vit filter:                        18  (0.0043881); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.19s 00:00:00.58 Elapsed: 00:00:00.48
# Mc/sec: 1088.91
//
Query:       MMETSP1137-20121227|2886_1  [L=556]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (556 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       101  (0.0246221); expected 82.0 (0.02)
Passed bias filter:                       37  (0.00901999); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.16s 00:00:00.51 Elapsed: 00:00:00.42
# Mc/sec: 1747.28
//
Query:       MMETSP1137-20121227|2887_1  [L=490]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (490 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        77  (0.0187713); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.15s 00:00:00.50 Elapsed: 00:00:00.40
# Mc/sec: 1616.87
//
Query:       MMETSP1137-20121227|2888_1  [L=561]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.8e-11   39.4   3.8    1.2e-05   22.3   0.1    3.0  2  TIGR00635 ruvB: Holliday junction DNA helicase RuvB
    1.9e-07   28.5   1.7    0.00051   17.2   0.1    2.6  2  TIGR02397 dnaX_nterm: DNA polymerase III, subunit gamma and tau
      9e-06   22.6   0.6      0.003   14.3   0.1    2.2  2  TIGR02928 TIGR02928: orc1/cdc6 family replication initiation protein
    4.1e-05   20.3   0.4    8.1e-05   19.4   0.3    1.4  1  TIGR01241 FtsH_fam: ATP-dependent metallopeptidase HflB
    5.8e-05   19.7   0.4     0.0096   12.3   0.1    2.2  2  TIGR00764 lon_rel: putative ATP-dependent protease
     0.0002   17.6   1.4    0.00039   16.7   0.1    1.9  2  TIGR01243 CDC48: AAA family ATPase, CDC48 subfamily
     0.0015   15.6   0.2     0.0044   14.0   0.0    1.8  2  TIGR01242 26Sp45: 26S proteasome subunit P45 family
     0.0044   13.7   0.0     0.0072   13.0   0.0    1.3  1  TIGR00665 DnaB: replicative DNA helicase
     0.0052   14.1   0.1      0.013   12.8   0.0    1.6  2  TIGR02640 gas_vesic_GvpN: gas vesicle protein GvpN
     0.0056   13.1   0.4       0.02   11.2   0.1    1.8  2  TIGR03922 T7SS_EccA: type VII secretion AAA-ATPase EccA
     0.0079   12.5   1.3      0.019   11.3   0.1    1.9  2  TIGR00763 lon: ATP-dependent protease La
  ------ inclusion threshold ------
      0.013   13.3   0.3        0.2    9.5   0.0    2.5  3  TIGR02173 cyt_kin_arch: putative cytidylate kinase
      0.019   12.4   0.0      0.038   11.4   0.0    1.4  1  TIGR00678 holB: DNA polymerase III, delta' subunit
       0.04   10.3   0.8       0.61    6.4   0.1    2.1  2  TIGR01447 recD: exodeoxyribonuclease V, alpha subunit
       0.04   10.3   0.8       0.11    8.9   0.0    2.0  3  TIGR00368 TIGR00368: Mg chelatase-like protein
       0.12    8.6   3.5        0.8    5.8   0.1    2.7  3  TIGR02442 Cob-chelat-sub: cobaltochelatase subunit


Domain annotation for each model (and alignments):
>> TIGR00635  ruvB: Holliday junction DNA helicase RuvB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.3   0.1   4.8e-08   1.2e-05       6      58 ..      49     101 ..      46     108 .. 0.94
   2 !   15.9   0.6   4.4e-06    0.0011      83     222 ..     307     439 ..     261     450 .. 0.83

  Alignments for each domain:
  == domain 1    score: 22.3 bits;  conditional E-value: 4.8e-08
   TIGR00635   6 fiGqekvkeklqlfikaakkrkealdhvllyGPPGlGkttlakiiakelgvkl 58 
                  +Gqek +e   ++++  k++k a   ++l+G PG Gkt+la  +a+elg k+
  MMETSP1137-20121227|2888_1  49 LVGQEKAREACGVVVELIKTKKMAGRALMLAGAPGTGKTALALALAQELGPKV 101
                 59***********************************************9776 PP

  == domain 2    score: 15.9 bits;  conditional E-value: 4.4e-06
   TIGR00635  83 dvlfiDeihrlskaveellypamedfkldivigkgpaaksvrldlapftlvGattraGkltsPLrdrfgiverlefYseeeleeivkrsaklleleieeeaaleiarr.srgtprianrllrrvrdfaqvkeekvinkkia 222
                  vlf+De+h l+ +   +l  a+e     ivi          +   + t v a    G +   L dr  i+  +  Y  +e+ +i+++ +++  l+++eea + +++   r t r a +ll   + ++q  + ++i+k+ +
  MMETSP1137-20121227|2888_1 307 GVLFVDEVHMLDIECFTYLNRALESTLAPIVIFAT----NRGMCTVRGTEVVAP--HG-VPVDLLDRLMIIRTMP-YALQEIVQILSIRSQIEGLSVDEEAFAYLGEIgVRSTLRYAVQLLTPAKVLVQTGGREQITKEDV 439
                 49**********************99999999643....334444556666554..34.566799***9998887.6889*************************996369***********9999999999999987644 PP

>> TIGR02397  dnaX_nterm: DNA polymerase III, subunit gamma and tau
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.7   0.1   0.00038     0.097      17      60 ..      50      97 ..      47     101 .. 0.75
   2 !   17.2   0.1     2e-06   0.00051     121     247 ..     309     451 ..     307     473 .. 0.80

  Alignments for each domain:
  == domain 1    score: 9.7 bits;  conditional E-value: 0.00038
   TIGR02397 17 iGqehvvk...tLknaikknkia.hayLfsGprGvGKTsiArilAkal 60
                +Gqe   +   ++ + ik++k+a  a +++G+ G+GKT++A  lA+ l
  MMETSP1137-20121227|2888_1 50 VGQEKAREacgVVVELIKTKKMAgRALMLAGAPGTGKTALALALAQEL 97
                666655441114567788899864799**************9999876 PP

  == domain 2    score: 17.2 bits;  conditional E-value: 2e-06
   TIGR02397 121 YiiDEvhmLsksafnaLLKtlEePpehvvFilaT.........te...lekipetilSRcqrfdfkkikeekiverlkkilkkekikveeeaLeliarka.eGslRDalslldqlislskg....kitlekveellglvseekl 247
                   +DEvhmL  + f  L + lE     +v i+aT         te   ++ +p  +l R    +      ++iv+ l+  ++ e+++v+eea  ++ + +    lR a++ll  + +l +     +it+e+vee+  l  ++k 
  MMETSP1137-20121227|2888_1 309 LFVDEVHMLDIECFTYLNRALESTLAPIV-IFATnrgmctvrgTEvvaPHGVPVDLLDRLMIIRTMPYALQEIVQILSIRSQIEGLSVDEEAFAYLGEIGvRSTLRYAVQLLTPAKVLVQTggreQITKEDVEEIDALFYDAKA 451
                 569********************998776.666644444466566444699***********************************************9834569*******87765544333559*******99887766554 PP

>> TIGR02928  TIGR02928: orc1/cdc6 family replication initiation protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.5   0.0    0.0028      0.72      41      65 ..      74      98 ..      64     118 .. 0.88
   2 !   14.3   0.1   1.2e-05     0.003     199     271 ..     374     442 ..     368     468 .. 0.92

  Alignments for each domain:
  == domain 1    score: 6.5 bits;  conditional E-value: 0.0028
   TIGR02928 41 snvliyGktGtGKtavtkkvlkele 65
                + +++ G +GtGKta + ++ +el 
  MMETSP1137-20121227|2888_1 74 RALMLAGAPGTGKTALALALAQELG 98
                56899************99999885 PP

  == domain 2    score: 14.3 bits;  conditional E-value: 1.2e-05
   TIGR02928 199 pYdaeeLrdILeeRaekafkdgvlddeviplvaalaaqehGdaRkAidlLreageiAeeegsekvteehvekA 271
                 pY  +e+ +IL+ R++  ++   +d+e+     ++  ++   +R A++lL  a  + ++ g+e++t+e+ve+ 
  MMETSP1137-20121227|2888_1 374 PYALQEIVQILSIRSQ--IEGLSVDEEAFAYLGEIGVRS--TLRYAVQLLTPAKVLVQTGGREQITKEDVEEI 442
                 9***************..89999***************9..8****************************985 PP

>> TIGR01241  FtsH_fam: ATP-dependent metallopeptidase HflB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.3   3.2e-07   8.1e-05      89     125 ..      73     111 ..      25     116 .. 0.82

  Alignments for each domain:
  == domain 1    score: 19.4 bits;  conditional E-value: 3.2e-07
   TIGR01241  89 PkGvllvGpPGtGktLlakavaGea..gvpffsisGsdf 125
                  + ++l G+PGtGkt la a+a e   +vpf  + Gs+ 
  MMETSP1137-20121227|2888_1  73 GRALMLAGAPGTGKTALALALAQELgpKVPFCPMVGSEV 111
                 36789*******************6337*********95 PP

>> TIGR00764  lon_rel: putative ATP-dependent protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.3   0.1   3.8e-05    0.0096      26      63 ..      62     100 ..      47     125 .. 0.80
   2 !    5.3   0.0     0.005       1.3     215     261 ..     303     349 ..     289     393 .. 0.79

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 3.8e-05
   TIGR00764  26 avevikkaakqkrnvlliGePGvGksmlakama.ellpk 63 
                  ve+ik+     r ++l G PG+Gk+ la a+a el pk
  MMETSP1137-20121227|2888_1  62 VVELIKTKKMAGRALMLAGAPGTGKTALALALAqELGPK 100
                 389999999999*******************99344455 PP

  == domain 2    score: 5.3 bits;  conditional E-value: 0.005
   TIGR00764 215 rahkGvlyideiatlslkvqqslltalqekkfpitGqselssGamvr 261
                 +   Gvl++de++ l ++   +l  al     pi   + +    +vr
  MMETSP1137-20121227|2888_1 303 ELVPGVLFVDEVHMLDIECFTYLNRALESTLAPIVIFATNRGMCTVR 349
                 5567***********************99988887666555555555 PP

>> TIGR01243  CDC48: AAA family ATPase, CDC48 subfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.1   1.5e-06   0.00039     488     541 ..      74     128 ..      60     152 .. 0.67
   2 ?   -0.6   0.1      0.25        63     112     181 ..     186     254 ..     161     317 .. 0.68

  Alignments for each domain:
  == domain 1    score: 16.7 bits;  conditional E-value: 1.5e-06
   TIGR01243 488 kgvllfgppgtgktllakavatesg..anfiavrgpeilskwvgesekaireifrk 541
                 + ++l g pgtgkt la a+a+e g    f  + g e++s  v ++e  + e fr+
  MMETSP1137-20121227|2888_1  74 RALMLAGAPGTGKTALALALAQELGpkVPFCPMVGSEVFSSEVKKTEV-LMENFRR 128
                 445666666666666666666665411346666666666666665553.3344444 PP

  == domain 2    score: -0.6 bits;  conditional E-value: 0.25
   TIGR01243 112 vkekllgkvlskgekvvvsvlegelklvvvsttpagivrvteatevelkeeaveeeketkvpevtyedig 181
                 + e l ++ +s g+++ +    g++k v  s   a    +     v l +  v+++ke  v +vt  d+ 
  MMETSP1137-20121227|2888_1 186 IYEALQKEKVSAGDVIYIEANSGAVKRVGRSDAYATEFDLEAEEYVPLPKGDVHKRKE-VVQDVTLHDLD 254
                 5566667777777777777777777777777777777777777777777777777777.67777777763 PP

>> TIGR01242  26Sp45: 26S proteasome subunit P45 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.0   1.7e-05    0.0044     158     194 ..      75     113 ..      66     130 .. 0.84
   2 ?   -2.1   0.0       1.4   3.5e+02     200     225 ..     289     315 ..     275     333 .. 0.66

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 1.7e-05
   TIGR01242 158 GvllyGppGtGktllakavaeet..natfirvvgselvk 194
                  ++l G pGtGkt la a+a+e   +  f  +vgse+  
  MMETSP1137-20121227|2888_1  75 ALMLAGAPGTGKTALALALAQELgpKVPFCPMVGSEVFS 113
                 6799*****************9744688*******9865 PP

  == domain 2    score: -2.1 bits;  conditional E-value: 1.4
   TIGR01242 200 Garlvre.vfklakekapsiifideid 225
                   ++v++ + +   e  p ++f+de+ 
  MMETSP1137-20121227|2888_1 289 INKVVNKyIDQGIAELVPGVLFVDEVH 315
                 444443313344556677777777775 PP

>> TIGR00665  DnaB: replicative DNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   0.0   2.8e-05    0.0072     198     241 ..      76     123 ..      70     149 .. 0.79

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 2.8e-05
   TIGR00665 198 iivAgRPsmGKtafalniaeniakkekl.p...vavFSLEmskeqLvq 241
                 +++Ag P+ GKta+al +a+++  k    p     vFS E++k+++++
  MMETSP1137-20121227|2888_1  76 LMLAGAPGTGKTALALALAQELGPKVPFcPmvgSEVFSSEVKKTEVLM 123
                 579******************988655312111568999998888765 PP

>> TIGR02640  gas_vesic_GvpN: gas vesicle protein GvpN
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.8   0.0   5.2e-05     0.013      20      47 ..      72      99 ..      58     118 .. 0.82
   2 ?   -3.1   0.0       3.7   9.5e+02     172     202 ..     362     392 ..     343     397 .. 0.72

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 5.2e-05
   TIGR02640 20 sgypvhlrGPaGtGktslalhvakkrdr 47
                +g+++ l G  GtGkt+lal++a++++ 
  MMETSP1137-20121227|2888_1 72 AGRALMLAGAPGTGKTALALALAQELGP 99
                7999********************9864 PP

  == domain 2    score: -3.1 bits;  conditional E-value: 3.7
   TIGR02640 172 alldrlvtisvdykdeetetaivraktdvae 202
                  lldrl+ i    +  +  ++i++ + +++ 
  MMETSP1137-20121227|2888_1 362 DLLDRLMIIRTMPYALQEIVQILSIRSQIEG 392
                 5999999998766677777788887777765 PP

>> TIGR03922  T7SS_EccA: type VII secretion AAA-ATPase EccA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.2   0.1     8e-05      0.02     312     335 ..      73      96 ..      42      99 .. 0.78
   2 ?   -1.2   0.0      0.45   1.2e+02     362     387 ..     288     317 ..     272     321 .. 0.66

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 8e-05
   TIGR03922 312 skHlllaGPPGtGkttiArvvaki 335
                  + l+laG PGtGkt++A ++a+ 
  MMETSP1137-20121227|2888_1  73 GRALMLAGAPGTGKTALALALAQE 96 
                 45689***************9986 PP

  == domain 2    score: -1.2 bits;  conditional E-value: 0.45
   TIGR03922 362 eseaktnelidkaLg....gvlFlDEayaL 387
                 e ++  n+ id+ +     gvlF+DE++ L
  MMETSP1137-20121227|2888_1 288 EINKVVNKYIDQGIAelvpGVLFVDEVHML 317
                 55555666666654322229*******988 PP

>> TIGR00763  lon: ATP-dependent protease La
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.3   0.1   7.3e-05     0.019     347     378 ..      67      98 ..      59     104 .. 0.88
   2 ?   -0.8   0.0      0.32        83     482     507 ..     359     384 ..     355     397 .. 0.91

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 7.3e-05
   TIGR00763 347 lrkklkgkilclvGPPGVGKtSlaksiAkaln 378
                 ++kk+ g+ l+l G PG GKt+la ++A+ l+
  MMETSP1137-20121227|2888_1  67 KTKKMAGRALMLAGAPGTGKTALALALAQELG 98 
                 57899***********************9876 PP

  == domain 2    score: -0.8 bits;  conditional E-value: 0.32
   TIGR00763 482 iPepLldRmEvielsgYveeeKleia 507
                 +P  LldR+ +i+   Y  +e ++i 
  MMETSP1137-20121227|2888_1 359 VPVDLLDRLMIIRTMPYALQEIVQIL 384
                 7999*****************99996 PP

>> TIGR02173  cyt_kin_arch: putative cytidylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   0.0   0.00079       0.2       4      26 ..      77      99 ..      75     104 .. 0.89
   2 ?   -3.4   0.0         7   1.8e+03      19      37 ..     185     203 ..     168     210 .. 0.71
   3 ?    0.6   0.0      0.43   1.1e+02      35      69 ..     271     305 ..     264     312 .. 0.86

  Alignments for each domain:
  == domain 1    score: 9.5 bits;  conditional E-value: 0.00079
   TIGR02173  4 visGpPGsGkttvakilaeklsl 26
                +++G PG+Gkt++a  la++l+ 
  MMETSP1137-20121227|2888_1 77 MLAGAPGTGKTALALALAQELGP 99
                689*****************985 PP

  == domain 2    score: -3.4 bits;  conditional E-value: 7
   TIGR02173  19 ilaeklslklisaGkirel 37 
                  + e l+ + +saG++  +
  MMETSP1137-20121227|2888_1 185 SIYEALQKEKVSAGDVIYI 203
                 5667788888999988655 PP

  == domain 3    score: 0.6 bits;  conditional E-value: 0.43
   TIGR02173  35 relaekkgldlaeskkaeeekeiDkkiDrkikeia 69 
                  ++ + k  +++e+ + e +k ++k iD+ i e +
  MMETSP1137-20121227|2888_1 271 GQMMKPKKTEITEKLRSEINKVVNKYIDQGIAELV 305
                 5778888899999999*************999876 PP

>> TIGR00678  holB: DNA polymerase III, delta' subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00015     0.038      10      38 ..      69      97 ..      62     108 .. 0.84

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 0.00015
   TIGR00678 10 kgrlahAlLfaGpeGvGkealaealakal 38
                k+    Al++aG +G+Gk+ala+ala++l
  MMETSP1137-20121227|2888_1 69 KKMAGRALMLAGAPGTGKTALALALAQEL 97
                334568********************987 PP

>> TIGR01447  recD: exodeoxyribonuclease V, alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   0.1    0.0024      0.61     161     183 ..      71      93 ..      48     100 .. 0.76
   2 ?    2.1   0.0     0.047        12     264     289 ..     307     332 ..     290     340 .. 0.87

  Alignments for each domain:
  == domain 1    score: 6.4 bits;  conditional E-value: 0.0024
   TIGR01447 161 lksnfslitGGPGTGKTttvarl 183
                 + ++ +++ G PGTGKT ++  l
  MMETSP1137-20121227|2888_1  71 MAGRALMLAGAPGTGKTALALAL 93 
                 44566799*********998776 PP

  == domain 2    score: 2.1 bits;  conditional E-value: 0.047
   TIGR01447 264 DvlvvDEaSMvdlelmakLlealkke 289
                  vl vDE  M+d+e +  L  al+ +
  MMETSP1137-20121227|2888_1 307 GVLFVDEVHMLDIECFTYLNRALEST 332
                 59***************999999865 PP

>> TIGR00368  TIGR00368: Mg chelatase-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   0.0   0.00041      0.11     195     238 ..      50     101 ..      24     127 .. 0.73
   2 ?   -2.3   0.0         1   2.6e+02     297     322 ..     307     332 ..     302     342 .. 0.86
   3 ?   -2.8   0.0       1.4   3.7e+02      81     141 ..     380     441 ..     374     449 .. 0.72

  Alignments for each domain:
  == domain 1    score: 8.9 bits;  conditional E-value: 0.00041
   TIGR00368 195 kGqqrakraleiaa.......aGghnllllGPPGsGktllakrl.qgllPel 238
                 +Gq++a+ a  + +         g  l+l G PG+Gkt la  l q l P++
  MMETSP1137-20121227|2888_1  50 VGQEKAREACGVVVeliktkkMAGRALMLAGAPGTGKTALALALaQELGPKV 101
                 67777777754432111122246789************99876514455555 PP

  == domain 2    score: -2.3 bits;  conditional E-value: 1
   TIGR00368 297 GvlfldellefkrkvldalrePledg 322
                 Gvlf+de+  ++ + +  l + le+ 
  MMETSP1137-20121227|2888_1 307 GVLFVDEVHMLDIECFTYLNRALEST 332
                 9*******999999999999999885 PP

  == domain 3    score: -2.8 bits;  conditional E-value: 1.4
   TIGR00368  81 aigilaaseqldakklde..ylllgelaldGklr.avkgvlpaiaaakkselkfiivakenaee 141
                  + il +  q++   +de  +  lge+ +  +lr av+   pa ++ +  +++   ++ke+ ee
  MMETSP1137-20121227|2888_1 380 IVQILSIRSQIEGLSVDEeaFAYLGEIGVRSTLRyAVQLLTPAKVLVQTGGRE--QITKEDVEE 441
                 56788888888887777634778999999999996677777888888888887..455555555 PP

>> TIGR02442  Cob-chelat-sub: cobaltochelatase subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.1     0.039        10       6      77 ..      49     129 ..      47     156 .. 0.64
   2 ?   -0.9   0.0      0.35        89     127     140 ..     305     318 ..     295     330 .. 0.83
   3 ?    5.8   0.1    0.0031       0.8     238     305 ..     382     446 ..     376     472 .. 0.87

  Alignments for each domain:
  == domain 1    score: 2.2 bits;  conditional E-value: 0.039
   TIGR02442   6 ivgqeklkla..Lllnavdp.kigg..vlirGekGtaKstaaRaLaall.pdi...evvagckfscdpedpeelceecrkk 77 
                 +vgqek + a   ++  ++  k+ g  ++++G  Gt+K+ +a aLa+ l p++    +v  + fs + +++e l e+ r+ 
  MMETSP1137-20121227|2888_1  49 LVGQEKAREAcgVVVELIKTkKMAGraLMLAGAPGTGKTALALALAQELgPKVpfcPMVGSEVFSSEVKKTEVLMENFRRA 129
                 678888877633455555431444433788999999999999999764414331114566666666666666666665555 PP

  == domain 2    score: -0.9 bits;  conditional E-value: 0.35
   TIGR02442 127 hrgiLYiDEvNLLd 140
                   g+L++DEv +Ld
  MMETSP1137-20121227|2888_1 305 VPGVLFVDEVHMLD 318
                 569*********98 PP

  == domain 3    score: 5.8 bits;  conditional E-value: 0.0031
   TIGR02442 238 rivaArsllpevrlsdelleliaelcieleveghRAdivlaraaralAAldgrrevteedvreaaeLv 305
                 +i+  rs ++  ++++e+++++ e+ ++    + R  + l   a++l    gr+++t+edv+e+  L 
  MMETSP1137-20121227|2888_1 382 QILSIRSQIEGLSVDEEAFAYLGEIGVRS---TLRYAVQLLTPAKVLVQTGGREQITKEDVEEIDALF 446
                 78999999**************9999886...57899*************************998775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (561 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       226  (0.0550951); expected 82.0 (0.02)
Passed bias filter:                      164  (0.0399805); expected 82.0 (0.02)
Passed Vit filter:                        47  (0.0114578); expected 4.1 (0.001)
Passed Fwd filter:                        16  (0.00390054); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              16  [number of targets reported over threshold]
# CPU time: 0.59u 0.18s 00:00:00.77 Elapsed: 00:00:00.57
# Mc/sec: 1276.65
//
Query:       MMETSP1137-20121227|2889_1  [L=258]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0069   12.3   0.0     0.0094   11.8   0.0    1.1  1  TIGR02865 spore_II_E: stage II sporulation protein E


Domain annotation for each model (and alignments):
>> TIGR02865  spore_II_E: stage II sporulation protein E
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.8   0.0   2.3e-06    0.0094     686     762 ..      11      78 ..       7      80 .. 0.84

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 2.3e-06
   TIGR02865 686 dvevekkklkngDlivlvsDGvlegekeeegkeeWlvkvlkeektndPeeiaeellekalelrkgkikDDmTvivak 762
                 ++ ve+++l ++ ++v+ +DG+ +g   ++     + ++    k+  Pe  ae+ll+ +++l+     DDmT i+++
  MMETSP1137-20121227|2889_1  11 EPHVETRTLPDDFVLVVATDGLWDGTTLKQ-----VTRIA--LKARTPEATAEKLLKLSVKLCGL--FDDMTCIIVQ 78 
                 678899999999999999*******99977.....66654..45678***************976..9****98874 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (258 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        71  (0.0173086); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.23u 0.14s 00:00:00.37 Elapsed: 00:00:00.28
# Mc/sec: 1216.19
//
Query:       MMETSP1137-20121227|2890_1  [L=314]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      0.004   14.7   0.0      0.022   12.4   0.0    1.9  2  TIGR00530 AGP_acyltrn: 1-acylglycerol-3-phosphate O-acyltransferases


Domain annotation for each model (and alignments):
>> TIGR00530  AGP_acyltrn: 1-acylglycerol-3-phosphate O-acyltransferases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.0     0.049     2e+02      13      38 ..      77     101 ..      69     109 .. 0.68
   2 !   12.4   0.0   5.3e-06     0.022      76     129 ..     178     227 ..     173     228 .. 0.90

  Alignments for each domain:
  == domain 1    score: -0.5 bits;  conditional E-value: 0.049
   TIGR00530  13 pkkkavlvvanHqsnlDiltlsaafa 38 
                 p    v+v + H++ lD l+    +a
  MMETSP1137-20121227|2890_1  77 P-SASVVVFGPHVGLLDGLFWLHFCA 101
                 3.6789999********776544443 PP

  == domain 2    score: 12.4 bits;  conditional E-value: 5.3e-06
   TIGR00530  76 asllkaakkllkegravgvFpeGtrskgrkilefKkGalkiAikakvpilPvvl 129
                 a++l+  + +++ +  +++ peG + +g ++l+f  G++    ++++p++Pvvl
  MMETSP1137-20121227|2890_1 178 ATILEHKRSFVRGRAPICLLPEGITHNGLTMLKFFPGSF----EGGTPVQPVVL 227
                 688999999*************************88887....69999999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (314 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        65  (0.0158459); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.24u 0.15s 00:00:00.39 Elapsed: 00:00:00.33
# Mc/sec: 1255.90
//
Query:       MMETSP1137-20121227|2891_1  [L=297]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.6e-61  204.0  22.6    6.8e-61  203.7  15.6    1.1  1  TIGR00790 fnt: formate/nitrite transporter
    3.3e-50  168.6  21.5    7.4e-49  164.2  14.9    2.0  1  TIGR04060 formate_focA: formate transporter FocA


Domain annotation for each model (and alignments):
>> TIGR00790  fnt: formate/nitrite transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  203.7  15.6   3.3e-64   6.8e-61       1     235 [.      58     290 ..      58     294 .. 0.92

  Alignments for each domain:
  == domain 1    score: 203.7 bits;  conditional E-value: 3.3e-64
   TIGR00790   1 kakksllkllvksilagvfialg...laavvttktaaelvdaglvklvggv.vFpiglilvviaGsdLftgnvlfltvallrkkislldllknwvvsllgNlvGavfvalllsllggvltaedqwivkvlavaekkvehtfvelflkgilcNllVCLAvylslsakdlaakilaillpvlaFvasGfeHsvAnmflipiallighkdvtvlqfivknLipvtlGNivggavlvgliywv 235
                 ka+ +  k++++sil+gv ia+g   ++ v  +    +++++gl+k+++g+   p gl++  ++G++Lftgn+  +t a+l++k+sl +llk+w+vs+ gN+vG++f+a+++++ g ++        +++ +a  k  ++f  ++++gilcN+lVC+Avy++   kdl +k++ai++p+ aF+a G eHsvAnmflip+++++g+  v+   f++knL+pvtlGNi+gga++v+    +
  MMETSP1137-20121227|2891_1  58 KANMPVNKIFLLSILSGVHIAFGaflMVSVGGACPGLAATNPGLQKMIFGAfGLPFGLMMTLVTGAELFTGNTALVTAAVLEGKASLPQLLKSWIVSFSGNFVGSLFMAAMVTAGGTLVGGG-----ASVGIAAAKSGLSFKAALVRGILCNWLVCMAVYMASFCKDLGGKMVAIWFPISAFAALGLEHSVANMFLIPLGMMNGAA-VSPATFLLKNLLPVTLGNIIGGAICVATAFSL 290
                 56778899***************64333333444567889********9862589*********************************************************9999988877.....8999**************************************************************************6.**************************987655 PP

>> TIGR04060  formate_focA: formate transporter FocA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  164.2  14.9   3.6e-52   7.4e-49       8     262 ..      52     288 ..      46     294 .. 0.88

  Alignments for each domain:
  == domain 1    score: 164.2 bits;  conditional E-value: 3.6e-52
   TIGR04060   8 ekvkkekatkealksflsaitAGafialafvfyltvtt...glasaawglaklv.gglvFslglilvvvlggeLFts.svltlvaklskrittlqllknWivvylGnliGalllvalillagqilaangqwgltilkvaqhKihhsviealvlGiLcnllvClavwmsfaaksltdkllililpvalFvasGfEHsiAnlfmiplgiliaelaspefwqaigvdpeqfadLtlsnfvlnnlipvtlGnivGGgvlvglvl 262
                  +++++ka+  + k fl++i+ G+ ia    + + v+    gla+++ gl+k++ g++   +gl++ +v+g+eLFt+ + l++ a l+++ ++ qllk+Wiv++ Gn++G+l+++a++++ g+ +   g+     + +a  K   s+  alv+GiLcn+lvC+av+m+   k+l +k++++ +p++ F a G EHs+An+f+iplg++  ++                     + f+l+nl+pvtlGni+GG+++v+   
  MMETSP1137-20121227|2891_1  52 VAAGVKKANMPVNKIFLLSILSGVHIAFGAFLMVSVGGacpGLAATNPGLQKMIfGAFGLPFGLMMTLVTGAELFTGnTALVTAAVLEGKASLPQLLKSWIVSFSGNFVGSLFMAAMVTAGGTLVGG-GAS----VGIAAAKSGLSFKAALVRGILCNWLVCMAVYMASFCKDLGGKMVAIWFPISAFAALGLEHSVANMFLIPLGMMNGAAV------------------SPATFLLKNLLPVTLGNIIGGAICVATAF 288
                 567899**********************9888888875223678999999997626677899***************778999999*****************************998766655544.444....5789999******************************************************************99444..................45789********************9765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (297 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       156  (0.0380302); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.27u 0.13s 00:00:00.40 Elapsed: 00:00:00.40
# Mc/sec: 980.02
//
Query:       MMETSP1137-20121227|2893_1  [L=174]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (174 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       105  (0.0255973); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.11s 00:00:00.28 Elapsed: 00:00:00.31
# Mc/sec: 740.84
//
Query:       MMETSP1137-20121227|2894_1  [L=148]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (148 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        48  (0.0117016); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.12s 00:00:00.29 Elapsed: 00:00:00.32
# Mc/sec: 610.45
//
Query:       MMETSP1137-20121227|2895_1  [L=174]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.8e-05   22.8   0.0    2.6e-05   22.3   0.0    1.2  1  TIGR02011 IscA: iron-sulfur cluster assembly protein IscA
    0.00034   18.6   0.0    0.00054   18.0   0.0    1.3  1  TIGR01997 sufA_proteo: FeS assembly scaffold SufA


Domain annotation for each model (and alignments):
>> TIGR02011  IscA: iron-sulfur cluster assembly protein IscA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.3   0.0   1.3e-08   2.6e-05       3      72 ..      73     147 ..      71     164 .. 0.78

  Alignments for each domain:
  == domain 1    score: 22.3 bits;  conditional E-value: 1.3e-08
   TIGR02011   3 lteaaakrvnsflanrgkglglrlgvkts.g.csgmayvlefvde...addddlvfedkgvkividakslvyldg 72 
                 +te+aa+r+++ l    k +g+r+g+    g  +g++y+l fv+e   a dd+ +   + v  ++d k+l   +g
  MMETSP1137-20121227|2895_1  73 VTEQAAERMRALLLTNPKAVGVRMGMVNDwGsHTGFSYTLSFVEEggvAADDERIDLPSDVAFFVDRKALWAGEG 147
                 699**********************8765231579********98543345555555678999999999876555 PP

>> TIGR01997  sufA_proteo: FeS assembly scaffold SufA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.0   2.6e-07   0.00054       5      71 ..      73     144 ..      70     163 .. 0.80

  Alignments for each domain:
  == domain 1    score: 18.0 bits;  conditional E-value: 2.6e-07
   TIGR01997   5 ltdaaatrvrelvkkreeavgirlsvkk..tGcaGleyalelvsep..keddvlle.kdGakvfvapeallf 71 
                 +t+ aa r+r l+  +++avg+r+++ +  +  +G++y+l  v+e    +dd+ ++    +  fv+ +al  
  MMETSP1137-20121227|2895_1  73 VTEQAAERMRALLLTNPKAVGVRMGMVNdwGSHTGFSYTLSFVEEGgvAADDERIDlPSDVAFFVDRKALWA 144
                 6999********************9765225678**********9633678889987788899999999865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (174 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        53  (0.0129205); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.17u 0.13s 00:00:00.30 Elapsed: 00:00:00.34
# Mc/sec: 675.47
//
Query:       MMETSP1137-20121227|2896_1  [L=217]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (217 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        48  (0.0117016); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.15s 00:00:00.34 Elapsed: 00:00:00.34
# Mc/sec: 842.40
//
Query:       MMETSP1137-20121227|2897_1  [L=218]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (218 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        59  (0.0143832); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.13s 00:00:00.32 Elapsed: 00:00:00.31
# Mc/sec: 928.18
//
Query:       MMETSP1137-20121227|2898_1  [L=1217]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   3.3e-106  354.0   0.0    2.2e-80  268.7   0.0    2.4  3  TIGR00376 TIGR00376: putative DNA helicase
    5.8e-05   20.1   0.2    0.00011   19.2   0.2    1.3  1  TIGR03600 phage_DnaB: phage replicative helicase, DnaB family
     0.0051   13.2   0.1      0.047   10.0   0.0    2.3  3  TIGR01447 recD: exodeoxyribonuclease V, alpha subunit
  ------ inclusion threshold ------
      0.017   10.9   0.1      0.064    9.0   0.0    1.8  2  TIGR01448 recD_rel: helicase, RecD/TraA family
      0.034   10.8   0.0      0.056   10.1   0.0    1.2  1  TIGR00665 DnaB: replicative DNA helicase


Domain annotation for each model (and alignments):
>> TIGR00376  TIGR00376: putative DNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.0      0.76   6.2e+02      25      71 ..     415     464 ..     413     471 .. 0.76
   2 !   82.5   0.0   6.1e-27     5e-24     150     240 ..     698     791 ..     680     805 .. 0.89
   3 !  268.7   0.0   2.6e-83   2.2e-80     337     635 ..     856    1167 ..     809    1170 .. 0.88

  Alignments for each domain:
  == domain 1    score: -3.7 bits;  conditional E-value: 0.76
   TIGR00376  25 rkgrailnlkgkirgellGkllvkfgrrkave.teis..vGDivlvsksn 71 
                 + gr + ++k++   el G  l+++ +r+a+  +e     GD+v v ++ 
  MMETSP1137-20121227|2898_1 415 QLGRRLSKVKLRNAMELDGGVLLTLTPRNASRlAECTfaEGDVVAVVRDK 464
                 67888999999999999999999**988887523333559****998654 PP

  == domain 2    score: 82.5 bits;  conditional E-value: 6.1e-27
   TIGR00376 150 edlqaidknLnesqkeAvkfAvsskd.laliHGPpGtGktrtlvElirqevkkgkrvLvtaesniavDnllErlakl..dlkivRlGHPaRllk 240
                  + + +d++Ln  q +Av+ A s k+ la++HGPpGtGkt  lvE +rq v +g+r+L++a++n+avD l+ rl+    +l+ivR G P+R+  
  MMETSP1137-20121227|2898_1 698 RQSRVFDETLNPVQLRAVDSATSVKEsLAVVHGPPGTGKTAVLVESVRQCVARGERLLLCAPANMAVDLLVLRLVAAdsNLRIVRFGNPERIDV 791
                 556789***************986543***********************************************9888899**********975 PP

  == domain 3    score: 268.7 bits;  conditional E-value: 2.6e-83
   TIGR00376  337 rivdeileesdvvlstnssaaleilk...eFDvvviDEasqAlepsvliPlvkarklilAGDhkqLPPtvlsed..aeeLektLferlikkypersklLnvqYRmnekimefpskefYngklkAdesvanillrdlvkeeateveedledkiPllfidtsglelleakekdst.skynegEvelvkeiikeLvklgvpeeeigvisPYdaqvdllrkll.......eekkid.....iEvssvDGFqGREkeviilslvRsnrkgevGFLkdlRRlnvaltRarRklivigdsevlkankvlkrlieyvkkkgevre 635 
                  r   e l+ +dvvl t + aa   ++    FD + +DEasqA++p+ ++P ++ar+ +l GD +qLPPtv+s++   e+L+ +L+e  +   p+ s +L+ q+Rm+  i e++s  +Y  +l+A+++v++++l++l ++ +t      +++ P++ i++   +    + +d      n+ E++ ++ ++++Lv++gv++ +i+visPY aqv+ll+ ll        e+ +d     + v +vD FqGRE e++++slvRsn  g vGF++d+RRlnva+tRarR+l+++ d ++++++++l++l+ +++ +ge r+
  MMETSP1137-20121227|2898_1  856 RGXFEALASADVVLCTATGAADAAISqlpLFDRAFLDEASQATQPNAWLPFLRARRGVLLGDPQQLPPTVISQEakREGLSVSLMEAALAAAPALSTMLTTQFRMHGSISEWASGAMYAERLVAHPTVKAHTLSELEGVRDTA-----DTRAPIVAIEVPSPGGSGWERRDARgGXSNRAEADAAVAHVRALVRAGVNATDIAVISPYAAQVSLLSLLLrmllriaSESPTDaslggVCVATVDSFQGREAEAVVVSLVRSNAAGAVGFVADQRRLNVAVTRARRHLALVFDAHTVSKDAFLANLVAHATARGERRQ 1167
                  4455778999******99988887776779******************************************9987899*********************************************************9998887.....9999******9877774444444444889************************************99866555567763344443333389*************************************************************************99876 PP

>> TIGR03600  phage_DnaB: phage replicative helicase, DnaB family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   0.2   1.3e-07   0.00011     192     298 ..     721     844 ..     710     852 .. 0.76

  Alignments for each domain:
  == domain 1    score: 19.2 bits;  conditional E-value: 1.3e-07
   TIGR03600 192 vkgdlivigaRPsmGKTtlalniaenvalkegkavl.vfslemsaeqlaerllasksgietrklktgrlndsd.................inklleavdrlseldlviddkaglsvaqlrsrarr 298
                 vk +l v+ + P++GKT++ ++ + ++ +++g + l     +m+ + l+ rl+a+ s+++   + ++++ d+                   +++++ ++rl +    +d+ + +  aq+rs  +r
  MMETSP1137-20121227|2898_1 721 VKESLAVVHGPPGTGKTAVLVESVRQC-VARGERLLlCAPANMAVDLLVLRLVAADSNLRIVRFGNPERIDVRalgltpervaarravelKDEAKAELSRLLADVGANDKMGATRKAQMRSFLKR 844
                 6889*************9988888777.46666665056689*****************999999999988888888888888777766666666666666655557777777777777776665 PP

>> TIGR01447  recD: exodeoxyribonuclease V, alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.0   0.0   5.8e-05     0.047     147     181 ..     707     741 ..     681     765 .. 0.77
   2 ?   -2.3   0.0      0.31   2.5e+02     293     303 ..     913     923 ..     908     926 .. 0.86
   3 ?   -0.5   0.0     0.089        73     560     580 ..    1127    1147 ..    1090    1154 .. 0.78

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 5.8e-05
   TIGR01447 147 leeenlqkvavalalksnfslitGGPGTGKTttva 181
                 l+  +l++v  a+ +k+ ++++ G PGTGKT + +
  MMETSP1137-20121227|2898_1 707 LNPVQLRAVDSATSVKESLAVVHGPPGTGKTAVLV 741
                 455666668889999****************8765 PP

  == domain 2    score: -2.3 bits;  conditional E-value: 0.31
   TIGR01447 293 IllGDknQLas 303
                 +llGD  QL++
  MMETSP1137-20121227|2898_1 913 VLLGDPQQLPP 923
                 8*********9 PP

  == domain 3    score: -0.5 bits;  conditional E-value: 0.089
   TIGR01447  560 YTgiTRakkqlevvsdkevlk 580 
                    ++TRa++ l +v d+++++
  MMETSP1137-20121227|2898_1 1127 NVAVTRARRHLALVFDAHTVS 1147
                  569************999765 PP

>> TIGR01448  recD_rel: helicase, RecD/TraA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   0.0   7.8e-05     0.064     328     379 ..     711     762 ..     701     767 .. 0.74
   2 ?   -1.7   0.0      0.14   1.1e+02     652     698 ..    1092    1143 ..    1088    1151 .. 0.72

  Alignments for each domain:
  == domain 1    score: 9.0 bits;  conditional E-value: 7.8e-05
   TIGR01448 328 qkealktai..qdkvviltGGPGtGKtTvtkaiielaeelegllevvLaAPTGr 379
                 q  a+++a+  ++ ++++ G PGtGKt v    +   +      +++L+AP   
  MMETSP1137-20121227|2898_1 711 QLRAVDSATsvKESLAVVHGPPGTGKTAVLVESVRQCVARG--ERLLLCAPANM 762
                 666666554115679*************9876666666666..799*****865 PP

  == domain 2    score: -1.7 bits;  conditional E-value: 0.14
   TIGR01448  652 siHksqGsefsvVilpiveahlr.....mLeRnllYTalTRakkklvlvGsk 698 
                  ++   qG e++ V++ +v++        + +   l  a+TRa+++l lv ++
  MMETSP1137-20121227|2898_1 1092 TVDSFQGREAEAVVVSLVRSNAAgavgfVADQRRLNVAVTRARRHLALVFDA 1143
                  77888999999999999887643222213445556899*****999998665 PP

>> TIGR00665  DnaB: replicative DNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0   6.8e-05     0.056     194     252 ..     722     780 ..     700     811 .. 0.87

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 6.8e-05
   TIGR00665 194 rsdLiivAgRPsmGKtafalniaeniakkeklpvavFSLEmskeqLvqrllaseaeves 252
                 ++ L +v g P+ GKta  ++ +++++++ +   +     m  + Lv rl+a+ +++  
  MMETSP1137-20121227|2898_1 722 KESLAVVHGPPGTGKTAVLVESVRQCVARGERLLLCAPANMAVDLLVLRLVAADSNLRI 780
                 6789*******************99999999999999****************998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1217 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       207  (0.0504632); expected 82.0 (0.02)
Passed bias filter:                      102  (0.0248659); expected 82.0 (0.02)
Passed Vit filter:                        30  (0.00731351); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.94u 0.17s 00:00:01.10 Elapsed: 00:00:00.78
# Mc/sec: 2059.37
//
Query:       MMETSP1137-20121227|2899_1  [L=58]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        43  (0.0104827); expected 82.0 (0.02)
Passed bias filter:                       41  (0.00999512); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.13s 00:00:00.25 Elapsed: 00:00:00.25
# Mc/sec: 306.21
//
Query:       MMETSP1137-20121227|2901_1  [L=54]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        38  (0.00926377); expected 82.0 (0.02)
Passed bias filter:                       36  (0.00877621); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.24
# Mc/sec: 296.98
//
Query:       MMETSP1137-20121227|2902_1  [L=687]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (687 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       152  (0.0370551); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.55u 0.16s 00:00:00.71 Elapsed: 00:00:00.52
# Mc/sec: 1743.78
//
Query:       MMETSP1137-20121227|2903_1  [L=177]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (177 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        58  (0.0141394); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.16s 00:00:00.35 Elapsed: 00:00:00.38
# Mc/sec: 614.79
//
Query:       MMETSP1137-20121227|2904_1  [L=204]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (204 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        86  (0.0209654); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.17s 00:00:00.39 Elapsed: 00:00:00.37
# Mc/sec: 727.72
//
Query:       MMETSP1137-20121227|2905_1  [L=152]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0047   14.0   0.1     0.0058   13.7   0.1    1.3  1  TIGR00601 rad23: UV excision repair protein Rad23


Domain annotation for each model (and alignments):
>> TIGR00601  rad23: UV excision repair protein Rad23
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   0.1   1.4e-06    0.0058      13      67 ..      20      71 ..      13     143 .. 0.74

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 1.4e-06
   TIGR00601 13 fkidlepdetvkelKekiesekgkdayevaqqkLiyaGkiLsDdktvkeykikek 67
                + +++++++ v  lK+ + +  g   ++++ q L+  G  L+D++++ ey +  +
  MMETSP1137-20121227|2905_1 20 VLLRVHASDSVYTLKQALVQATG---IQEEAQILLIDGDKLEDERALGEYSLPPQ 71
                6789*******************...77777777778999**********98654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (152 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        63  (0.0153584); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.17u 0.15s 00:00:00.32 Elapsed: 00:00:00.33
# Mc/sec: 607.95
//
Query:       MMETSP1137-20121227|2906_1  [L=269]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (269 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       115  (0.0280351); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.14s 00:00:00.37 Elapsed: 00:00:00.41
# Mc/sec: 865.98
//
Query:       MMETSP1137-20121227|2907_1  [L=438]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (438 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        74  (0.01804); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.17s 00:00:00.47 Elapsed: 00:00:00.37
# Mc/sec: 1562.47
//
Query:       MMETSP1137-20121227|2908_1  [L=613]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      1e-20   71.3   0.2    7.5e-17   58.5   0.0    2.4  2  TIGR02956 TMAO_torS: TMAO reductase sytem sensor TorS
    0.00037   17.7   0.0    0.00064   16.9   0.0    1.4  1  TIGR02875 spore_0_A: sporulation transcription factor Spo0A
    0.00058   16.8   1.4     0.0075   13.1   0.0    2.7  2  TIGR01386 cztS_silS_copS: heavy metal sensor kinase


Domain annotation for each model (and alignments):
>> TIGR02956  TMAO_torS: TMAO reductase sytem sensor TorS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.9   0.0   1.3e-05     0.018     583     606 ..     348     371 ..     269     378 .. 0.80
   2 !   58.5   0.0   5.5e-20   7.5e-17     665     831 ..     377     542 ..     371     581 .. 0.82

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 1.3e-05
   TIGR02956 583 vliNlvgNaiKFTdrGsvvlrvsl 606
                  l Nl  Na KFT++G+v++r+ +
  MMETSP1137-20121227|2908_1 348 ALLNLTVNALKFTSKGHVTIRTAM 371
                 589******************987 PP

  == domain 2    score: 58.5 bits;  conditional E-value: 5.5e-20
   TIGR02956 665 sveSelgkGScFafelplergkkaeksatkevidvpparvLlvEDNevnamvaqglleklGhkvt.laesgksAleclee..kaFDlallDinLpDtdGvtLlkqLkeleeake...elkfiavsAhvfnedvekylaagFdgflaKPlsekqLvatlakilegkkseeeapv 831
                  +eSelg+G   +f+lp+e++  +  ++    ++ + arv++v+D  + a+ a++++++lGhkv  la +g++Al+ l++   + D++++D+++p + G + +k  ++ e+++    +l++ a + +v + dv+ y++a   g + KP++ ++     ++il+g+k+  ++ v
  MMETSP1137-20121227|2908_1 377 RLESELGVGTFCTFDLPFEKAPDVVAQE---ITEAHEARVMIVDDVDLIAEGAAEVVASLGHKVAyLASNGAEALKILKQhhAHIDVVFMDVQMPVMRGDEAAKLYRAWEAEHYdepQLRIYACTGNVTTTDVDAYVSAASTGCVGKPVQPHTY----EVILNGQKEAITNVV 542
                 589****************998776554...58999***************************9648999********9964468**************9988877777776557655*******************************98765....455556665555433 PP

>> TIGR02875  spore_0_A: sporulation transcription factor Spo0A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.0   4.7e-07   0.00064       3      89 ..     411     500 ..     409     548 .. 0.81

  Alignments for each domain:
  == domain 1    score: 16.9 bits;  conditional E-value: 4.7e-07
   TIGR02875   3 irivivddnkefvellkeylaaqedlevvGvaknGvealelikekkp..dvvvldiimpyldG..lgvleklaeielkakpkvlllsavGq 89 
                  r++ivdd   ++e  +e +a+    +v+ +a nG eal+++k+++   dvv +d+ mp + G   + l +  e e+  +p++ + +  G+
  MMETSP1137-20121227|2908_1 411 ARVMIVDDVDLIAEGAAEVVASL-GHKVAYLASNGAEALKILKQHHAhiDVVFMDVQMPVMRGdeAAKLYRAWEAEHYDEPQLRIYACTGN 500
                 68999999888888888877765.56899**************98644499**********762256677777777777787777776665 PP

>> TIGR01386  cztS_silS_copS: heavy metal sensor kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.1   0.0   5.5e-06    0.0075     237     261 ..     159     183 ..     153     189 .. 0.91
   2 ?    1.5   0.0     0.018        25     357     378 ..     348     368 ..     346     380 .. 0.78

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 5.5e-06
   TIGR01386 237 afqrlsqFsadlAHelRtPltnLlt 261
                  f+ l+ F + + H+lRtPl  L+ 
  MMETSP1137-20121227|2908_1 159 MFRSLQTFTQSIGHDLRTPLQALMF 183
                 6999*******************95 PP

  == domain 2    score: 1.5 bits;  conditional E-value: 0.018
   TIGR01386 357 alsNLlsNAlrytpegstievr 378
                 al NL  NAl++t++g  +++r
  MMETSP1137-20121227|2908_1 348 ALLNLTVNALKFTSKGH-VTIR 368
                 789***********986.4444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (613 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       205  (0.0499756); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.40u 0.25s 00:00:00.65 Elapsed: 00:00:00.95
# Mc/sec: 851.68
//
Query:       MMETSP1137-20121227|2909_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        17  (0.00414432); expected 82.0 (0.02)
Passed bias filter:                       16  (0.00390054); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.16s 00:00:00.25 Elapsed: 00:00:00.34
# Mc/sec: 201.87
//
Query:       MMETSP1137-20121227|2910_1  [L=56]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        92  (0.0224281); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.21s 00:00:00.31 Elapsed: 00:00:00.31
# Mc/sec: 238.43
//
Query:       MMETSP1137-20121227|2911_1  [L=385]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.4e-15   54.6   8.8    4.1e-15   53.9   6.1    1.2  1  TIGR00817 tpt: Tpt phosphate/phosphoenolpyruvate translocator


Domain annotation for each model (and alignments):
>> TIGR00817  tpt: Tpt phosphate/phosphoenolpyruvate translocator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.9   6.1   9.9e-19   4.1e-15      19     301 ..      53     349 ..      38     350 .. 0.80

  Alignments for each domain:
  == domain 1    score: 53.9 bits;  conditional E-value: 9.9e-19
   TIGR00817  19 ivnkkllkl.fhypvlktlvslavgvllellswssilkkrlkiskallklllpvaivhtighvtsnvslskvavSfthtikalepifsvvlskfflgrefpltlylsLlpivlGvalasltelsfnllgflsamisniefvarnifsKkiltkksldklnlyalis............ililfll.spiafiveglklltreflqaiskvnvlklvtvslvaalgifHlyqqvafqllervspltysvgNvlKRvvvIvvSilffetkisflqvl.....GvilaiaGvflYskvkakkkke 301
                 +vnkk+  + fh p++ +  ++   ++   l w+ +l +++ ++  ++   + va++      + nvsls+ +v f+ + k  +  ++++++ f+ + + +  + lsL  ++lGv  a++ ++    +gfl+ +++ ++    +i    + ++ s++ ++l   ++            +   +++ +p+  +    ++l r+++ ++s++n + +v   l+    ++ + +  +f l++r sp+t+ v    K   v+v   ++f tk    q +     Gv +a++Gv lY +vk+   +e
  MMETSP1137-20121227|2911_1  53 LVNKKVFAAgFHFPITLSFFHFCFTIVFYKLLWACRLFETPRPDLPQFEK-FKVALAGVGSIGFMNVSLSLNSVGFYQVTKLTIVPVTLAINYFYYNVSTTNKVKLSLFILLLGVGVATVSDVELRPVGFLFGLLAVLTTAMFQIWQGTKQKEYSVSGTQLQNSVAfwqttqallgsvLFESICMdAPPESCDSAAQFLLRAYAGGQSESNAMWFV---LFTCF-LALAVNWCSFGLIGRTSPITFQVVGHAKTCLVLVGGYVMFPTKAGDTQQFynniaGVSVAMLGVVLYGHVKQASSQE 349
                 68988876559*********************************998864.455555444444789***************9999999*******99999999******************************************98888887766666665443333223332212222222222455555667789999999998888877766...33333.456899************************************9865554444446***************9987665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (385 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       182  (0.0443686); expected 82.0 (0.02)
Passed bias filter:                      101  (0.0246221); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.24u 0.25s 00:00:00.49 Elapsed: 00:00:00.46
# Mc/sec: 1104.69
//
Query:       MMETSP1137-20121227|2912_1  [L=830]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (830 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       121  (0.0294978); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.53u 0.17s 00:00:00.70 Elapsed: 00:00:00.48
# Mc/sec: 2282.31
//
Query:       MMETSP1137-20121227|2913_1  [L=103]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (103 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       117  (0.0285227); expected 82.0 (0.02)
Passed bias filter:                      103  (0.0251097); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.10s 00:00:00.25 Elapsed: 00:00:00.33
# Mc/sec: 411.97
//
Query:       MMETSP1137-20121227|2914_1  [L=401]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (401 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       120  (0.029254); expected 82.0 (0.02)
Passed bias filter:                       96  (0.0234032); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.18s 00:00:00.46 Elapsed: 00:00:00.43
# Mc/sec: 1230.88
//
Query:       MMETSP1137-20121227|2915_1  [L=284]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (284 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       144  (0.0351048); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.18s 00:00:00.42 Elapsed: 00:00:00.72
# Mc/sec: 520.62
//
Query:       MMETSP1137-20121227|2916_1  [L=64]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        64  (0.0156021); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.14s 00:00:00.26 Elapsed: 00:00:00.24
# Mc/sec: 351.97
//
Query:       MMETSP1137-20121227|2917_1  [L=904]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   2.2e-210  698.1   0.0   1.3e-136  454.4   0.0    2.1  2  TIGR00631 uvrb: excinuclease ABC subunit B
    6.2e-15   52.5   0.0    8.4e-09   32.2   0.0    2.1  2  TIGR01389 recQ: ATP-dependent DNA helicase RecQ
    3.1e-13   47.1   0.0    2.6e-07   27.6   0.0    2.1  2  TIGR00643 recG: ATP-dependent DNA helicase RecG
    8.3e-12   42.2   0.1    3.7e-08   30.2   0.0    2.2  2  TIGR00595 priA: primosomal protein N'
    3.9e-09   34.1   0.8    8.5e-09   32.9   0.2    1.7  2  TIGR01388 rnd: ribonuclease D
    2.8e-07   27.1   0.0     0.0016   14.7   0.0    2.2  2  TIGR00580 mfd: transcription-repair coupling factor
    3.1e-05   19.5   0.1     0.0023   13.3   0.0    2.2  2  TIGR01054 rgy: reverse gyrase
    0.00054   16.9   0.0      0.097    9.5   0.0    2.3  2  TIGR04095 dnd_restrict_1: DNA phosphorothioation system restriction enzyme
     0.0019   13.8   1.4     0.0038   12.8   0.2    1.8  2  TIGR04121 DEXH_lig_assoc: DEXH box helicase, DNA ligase-associated
     0.0099   13.7   0.1      0.042   11.7   0.1    2.0  1  TIGR02573 LcrG_PcrG: type III secretion protein LcrG
  ------ inclusion threshold ------
       0.02   11.5   0.0      0.046   10.3   0.0    1.5  2  TIGR00614 recQ_fam: ATP-dependent DNA helicase, RecQ family


Domain annotation for each model (and alignments):
>> TIGR00631  uvrb: excinuclease ABC subunit B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  241.7   0.0   7.9e-75   2.9e-72       2     192 ..     104     294 ..     103     324 .. 0.96
   2 !  454.4   0.0  3.4e-139  1.3e-136     229     585 ..     405     769 ..     390     807 .. 0.93

  Alignments for each domain:
  == domain 1    score: 241.7 bits;  conditional E-value: 7.9e-75
   TIGR00631   2 fklkseykPaGDqpkaieklvesleagekeqvLlGvtGsGktftianviakvqkPtlvlahnktLaaqLyeelkelfPenaveyfvsyyDyyqPeayvpskdlyiekdasindeierlrlsatksllerrDvivvasvsaiyglgsPeeylklalklevgkeidreelleklvelqyerndvelergkfrv 192
                 f+l+++y+ +GDqp+ai+ lv +le+ge ++vL+G+tG+Gktf +a+ ia ++kPtl++a+nk+LaaqLy+el+++fP nav +fvs++Dyy+Pe+y +++ ++ ek + in+ i+ lr+ at +l+errD+ivvasvs+iyglg P++yl++a+ l vg++  ++el++ l  + yer+ v+ erg+f+ 
  MMETSP1137-20121227|2917_1 104 FELHAPYEASGDQPSAISGLVAELESGEPRVVLKGATGTGKTFVMAQTIAALNKPTLLIAPNKVLAAQLYSELRSFFPRNAVSFFVSHFDYYRPESYSAASATHTEKVSRINEAIDTLRHQATCALFERRDTIVVASVSCIYGLGMPAKYLEAAILLAVGQTHAEDELQDLLRAMLYERSAVARERGQFSW 294
                 9********************************************************************************************************************************************************************************************85 PP

  == domain 2    score: 454.4 bits;  conditional E-value: 3.4e-139
   TIGR00631 229 gevlkeleeltifpashyvvpeekleeaikeikeeleerlkvleeenklleaqrlkqrteyDlemlkelGyckGienysrhlegrkagepPatlldylp.edfllviDeshvtlpqlrgmyegDrsrkktLveyGfrLPsaldnrPlkfeefeekvkqvvyvsatPgkleleks..eeevveqiirPtgllDPevevrpte..gqvdd.lleeirervaknervlvttltkkmaedltdylkelgikvkylhseidtlerveiirdLrkgefdvlvGinLLreGlDlPevslvailDadkeGflrsersLiqtiGraarnveGkvilyadk..itesmekaieeterrrkiqieyneehgitPkt 585
                 ++v  +++e+ ++pash+ v  ++l +++ +i+eel++r + le+ ++  ea+rl+ r++ Dle ++e+Gyc+G+eny+rhl++r++gepP+tlldy+p +d+ll++De h+t pq+ +m+ gD+ rk++Lv +GfrLPsaldnrPl+  ef+++v q+v +satPg++       + ++ e i+rPtg+ DP+v+v  +e  g v+d ll +i++r+a +e++lvt+ltk+ ae+l+ +l+ +g+ +++lhs+++ +er+e i+ Lr+g++dvl+G n+LreGlDlPevslvai+Dadk+Gflrse+sLiqtiGraar+v+G+++ly+++  i+++m++ai+eterrr+ q+++ne+hg+tP+ 
  MMETSP1137-20121227|2917_1 405 EAVAAAVSEFVLYPASHHTVAGDELGSVMAAIEEELASRATHLESLGQWREAERLRFRVNADLEQMRECGYCRGMENYARHLAKRSEGEPPETLLDYMPqDDWLLLVDECHITAPQISAMFAGDHQRKRNLVAHGFRLPSALDNRPLTGAEFWARVPQAVLISATPGAEVERLCgvSPSLTELIVRPTGVPDPQVRVISAEevGGVEDhLLAQIESRRAVGEKTLVTVLTKRSAEELARFLDARGVPAAWLHSDLKPVERLEAIDGLRNGQYDVLIGCNMLREGLDLPEVSLVAIIDADKQGFLRSETSLIQTIGRAARHVDGTALLYTQSgvISDAMRAAIDETERRRTRQQQHNEAHGLTPRG 769
                 56678899******************************************************************************************6268****************************************************************98655444114579***************9976652256766599*********************************************************************************************************************87555******************************96 PP

>> TIGR01389  recQ: ATP-dependent DNA helicase RecQ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.0     5e-07   0.00019     217     351 ..     616     757 ..     600     772 .. 0.76
   2 !   32.2   0.0   2.3e-11   8.4e-09     514     589 ..     800     875 ..     772     877 .. 0.87

  Alignments for each domain:
  == domain 1    score: 17.8 bits;  conditional E-value: 5e-07
   TIGR01389 217 eylkkere..ksGiiYassRkkveelaeaLeskgiealaYhaGlskkvRaeaqekFleddvkvvvatvaFGmGidksdvRfvihldlPkn..l...esyyqeaGRaGRDGlkaeaillyseaDl..allkrlieeseasedrkq 351
                   ++++r   +  ++   +++  eela++L ++g++a+  h+ l+  +R ea +   + +  v++  +    G+d ++v  v+ +d  k+  l    s  q  GRa R      + lly+++ +    ++  i+e+e    r+q
  MMETSP1137-20121227|2917_1 616 AQIESRRAvgEKTLVTVLTKRSAEELARFLDARGVPAAWLHSDLKPVERLEAIDGLRNGQYDVLIGCNMLREGLDLPEVSLVAIIDADKQgfLrseTSLIQTIGRAARHVDG--TALLYTQSGVisDAMRAAIDETERRRTRQQ 757
                 555555443466788899****************************************************************99988764332221579999****996544..345666555411344555666555554444 PP

  == domain 2    score: 32.2 bits;  conditional E-value: 2.3e-11
   TIGR01389 514 kalsvevdeaLfeaLrelRkelaeeenvppyviFsDstLkelaekkPatlnellkikGvGeakldrygeallevir 589
                 +++  + +++ +ea+ ++R e+a +++vp + + +D+ +  +a + P +++el  ++G+G + ++r+geal+ v++
  MMETSP1137-20121227|2917_1 800 RSTLDAPQRRRYEAMCAWREEQAVANGVPRFRVMTDAMMLRVAXAAPSSAEELAAVRGIGPKTMKRHGEALMSVLQ 875
                 45555667889*************************************************************9987 PP

>> TIGR00643  recG: ATP-dependent DNA helicase RecG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.6   0.0   6.8e-10   2.6e-07     232     313 ..     108     185 ..     101     200 .. 0.87
   2 !   17.2   0.0   9.3e-07   0.00035     486     553 ..     653     724 ..     630     746 .. 0.78

  Alignments for each domain:
  == domain 1    score: 27.6 bits;  conditional E-value: 6.8e-10
   TIGR00643 232 LPfelTeaQkravkeileDlksdvpmnRLlqGdVGsGKTvVavlallaviesGyqvalmaPTeiLAeQhyeklrelleplgi 313
                  P+e   +Q +a++ +++ l+s +p    l+G  G+GKT V + ++ a+ +    ++l+aP  +LA+Q y +lr++++  ++
  MMETSP1137-20121227|2917_1 108 APYEASGDQPSAISGLVAELESGEPR-VVLKGATGTGKTFVMAQTIAALNK---PTLLIAPNKVLAAQLYSELRSFFPRNAV 185
                 6**********************995.478***********9877665544...59*********************97544 PP

  == domain 2    score: 17.2 bits;  conditional E-value: 9.3e-07
   TIGR00643 486 allhgrlksdekeevleeFrekevdiLvaTtviEvGvdvPnatvmviedaeRfGl....sqLHQLRGRvgRg 553
                 a lh+ lk+ e+ e++   r+++ d+L+  +++  G+d+P+++++ i da++ G     + L Q  GR +R 
  MMETSP1137-20121227|2917_1 653 AWLHSDLKPVERLEAIDGLRNGQYDVLIGCNMLREGLDLPEVSLVAIIDADKQGFlrseTSLIQTIGRAARH 724
                 668999999999999999999999999999999999999999999999999999744444577777777774 PP

>> TIGR00595  priA: primosomal protein N'
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.8   0.0   0.00015     0.055       2      54 ..     136     185 ..     135     211 .. 0.85
   2 !   30.2   0.0   9.9e-11   3.7e-08     274     383 ..     634     735 ..     623     769 .. 0.76

  Alignments for each domain:
  == domain 1    score: 9.8 bits;  conditional E-value: 0.00015
   TIGR00595   2 leGvtGSGKtEvylkviekvlakgksvlvLvPEiaLtaqllkrlkerfgseva 54 
                 l+G tG GKt v  + i+   a +k  l++ P   L+aql ++l++ f  +++
  MMETSP1137-20121227|2917_1 136 LKGATGTGKTFVMAQTIA---ALNKPTLLIAPNKVLAAQLYSELRSFFPRNAV 185
                 89********99888776...67999*******************99977654 PP

  == domain 2    score: 30.2 bits;  conditional E-value: 9.9e-11
   TIGR00595 274 tekveeelkkllp..kariarldsDttrrkkalealleqfaagkidiliGtqmiaKGldfpkvtlvgvlsaDsglklpdfRaaErtfqlltqvaGRagRaekpgevliqtvn 383
                 t++ +eel+++l+  ++  a l sD    ++   + ++ +++g+ d+liG  m+  Gld+p+v+lv++++aD+    + +R+     + l q  GRa+R + +g+ l+ t++
  MMETSP1137-20121227|2917_1 634 TKRSAEELARFLDarGVPAAWLHSDLKPVER--LEAIDGLRNGQYDVLIGCNMLREGLDLPEVSLVAIIDADKQ---GFLRS----ETSLIQTIGRAAR-HVDGTALLYTQS 735
                 5566677777765223556677777766666..678999*********************************75...44555....46688999*****.667777777754 PP

>> TIGR01388  rnd: ribonuclease D
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0         1   3.9e+02     294     350 ..     399     455 ..     376     464 .. 0.69
   2 !   32.9   0.2   2.3e-11   8.5e-09     204     279 ..     802     877 ..     791     896 .. 0.90

  Alignments for each domain:
  == domain 1    score: -2.1 bits;  conditional E-value: 1
   TIGR01388 294 lespgakallkllkklvkevaetlglasellask.kqleklleerekalpdalqgWRr 350
                 +e ++++a++ ++ + v   a ++ +a + l s    +e+ l++r     ++l +WR 
  MMETSP1137-20121227|2917_1 399 AEAEAHEAVAAAVSEFVLYPASHHTVAGDELGSVmAAIEEELASRA-THLESLGQWRE 455
                 4445666677777777777777777776666554156777666644.67789999986 PP

  == domain 2    score: 32.9 bits;  conditional E-value: 2.3e-11
   TIGR01388 204 klkpkelavlkalaaWRereAreRdkprnfvlkeeallelarlaprnleeleel.glkgkeirksgdkllalvkeAl 279
                  l++++  + +a++aWRe++A+   +pr +v+ +  +l +a  ap ++eel+++ g+ +k+++++g++l++++ +Al
  MMETSP1137-20121227|2917_1 802 TLDAPQRRRYEAMCAWREEQAVANGVPRFRVMTDAMMLRVAXAAPSSAEELAAVrGIGPKTMKRHGEALMSVL-QAL 877
                 5788899999********************************************66************99755.454 PP

>> TIGR00580  mfd: transcription-repair coupling factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0   4.2e-06    0.0016     440     522 ..     102     180 ..      92     196 .. 0.85
   2 !   10.0   0.0   0.00011      0.04     689     754 ..     654     723 ..     647     743 .. 0.82

  Alignments for each domain:
  == domain 1    score: 14.7 bits;  conditional E-value: 4.2e-06
   TIGR00580 440 aefedafpfeeTeDQlkaieevkkDlekekpmDRlvcGDvGfGKTEvamrAafkavldgkQvavlvPTTlLaeQHfetlkeRf 522
                  +fe ++p+e   DQ  ai+ + ++le+ +p   ++ G  G GKT v  +    a+l+ k   +++P  +La Q +++l+  f
  MMETSP1137-20121227|2917_1 102 GAFELHAPYEASGDQPSAISGLVAELESGEPR-VVLKGATGTGKTFVMAQT--IAALN-KPTLLIAPNKVLAAQLYSELRSFF 180
                 57999*************************94.3568********986554..45554.67899*************998766 PP

  == domain 2    score: 10.0 bits;  conditional E-value: 0.00011
   TIGR00580 689 iaHgqmeeeeleevmleFlkkefdvLvcTtiiEsGidipnaNTiiierAdkfGl....aqLyQLrGRvGR 754
                   H+ ++  e  e +    ++++dvL+   ++  G+d+p++  + i +Adk G+    + L Q  GR  R
  MMETSP1137-20121227|2917_1 654 WLHSDLKPVERLEAIDGLRNGQYDVLIGCNMLREGLDLPEVSLVAIIDADKQGFlrseTSLIQTIGRAAR 723
                 5789999888888889999*********************************974433456666666655 PP

>> TIGR01054  rgy: reverse gyrase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    3.8   0.0    0.0047       1.8     104     154 ..     140     187 ..     132     207 .. 0.87
   2 !   13.3   0.0   6.2e-06    0.0023     327     405 ..     623     699 ..     599     722 .. 0.78

  Alignments for each domain:
  == domain 1    score: 3.8 bits;  conditional E-value: 0.0047
   TIGR01054 104 tGvGkttfglvmslflakkgkrvyiilPttlLvkqvaeklsslaekeglni 154
                 tG Gkt+   vm+  +a+  k +++i P ++L++q ++ l+s+  ++ ++ 
  MMETSP1137-20121227|2917_1 140 TGTGKTF---VMAQTIAALNKPTLLIAPNKVLAAQLYSELRSFFPRNAVSF 187
                 999*997...68888999999*********************999887665 PP

  == domain 2    score: 13.3 bits;  conditional E-value: 6.2e-06
   TIGR01054 327 klGkGglvfvsidyGkekaeeieeelkekgvkakliha..kdk...edldkfeeGeidvliGvasyygvlvRGlDlPervryav 405
                 ++G+ +lv v +   k  aee++++l  +gv a  +h+  k+    e +d +++G+ dvliG     ++l  GlDlPe++  a+
  MMETSP1137-20121227|2917_1 623 AVGEKTLVTVLT---KRSAEELARFLDARGVPAAWLHSdlKPVerlEAIDGLRNGQYDVLIGC----NMLREGLDLPEVSLVAI 699
                 566666666655...589*****************998776651114567789*********7....78889******998887 PP

>> TIGR04095  dnd_restrict_1: DNA phosphorothioation system restriction enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.5   0.0   0.00026     0.097      25      77 ..     132     179 ..     114     232 .. 0.84
   2 !    5.0   0.0    0.0057       2.1     326     387 ..     662     728 ..     633     786 .. 0.74

  Alignments for each domain:
  == domain 1    score: 9.5 bits;  conditional E-value: 0.00026
   TIGR04095  25 grGilkmatGtGktltaLalvsklaekikslvvvvvvPykhLveqWakeaekF 77 
                  r +lk atGtGkt    +++++l++      +++++P k L+ q + e+++F
  MMETSP1137-20121227|2917_1 132 PRVVLKGATGTGKTFVMAQTIAALNKP-----TLLIAPNKVLAAQLYSELRSF 179
                 57899*********9988888888665.....7889*************9998 PP

  == domain 2    score: 5.0 bits;  conditional E-value: 0.0057
   TIGR04095 326 eeReellkqfesgelqalvairCLDeGvDvPairtayiLasss.....nPrqFiqRRGRvLRkspGk 387
                  eR e +  + +g+ ++l+    L eG+D+P++    i+ + +          iq  GR  R+  G 
  MMETSP1137-20121227|2917_1 662 VERLEAIDGLRNGQYDVLIGCNMLREGLDLPEVSLVAIIDADKqgflrSETSLIQTIGRAARHVDGT 728
                 57888889999*********************98766654433111113456777777777777775 PP

>> TIGR04121  DEXH_lig_assoc: DEXH box helicase, DNA ligase-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0      0.14        54      30      78 ..     133     172 ..     122     182 .. 0.61
   2 !   12.8   0.2     1e-05    0.0038     248     351 ..     625     729 ..     607     759 .. 0.81

  Alignments for each domain:
  == domain 1    score: -0.9 bits;  conditional E-value: 0.14
   TIGR04121  30 sglliapTGaGKTlavflpslielaakekpkkglkvlyitPLkaLakdi 78 
                   +l+ +TG+GKT+ +  ++ i+++  +k      +l i+P k La+++
  MMETSP1137-20121227|2917_1 133 RVVLKGATGTGKTFVM--AQTIAAL--NK-----PTLLIAPNKVLAAQL 172
                 568999*******954..2222222..12.....245566666555555 PP

  == domain 2    score: 12.8 bits;  conditional E-value: 1e-05
   TIGR04121 248 arttlvFtNtRsqaEllfqaLleaneelaleialhHgsldkeqRekveaalkagklravvcTssLdLGvDfgdvdlviqvGspk.gvaR....llQRiGRsnHrldeps 351
                  + tlv + t+  aE    +L +  +    + a  H+ l+  +R +  ++l++g+  +++    L  G+D  +v lv  + + k g  R    l+Q iGR++ ++d ++
  MMETSP1137-20121227|2917_1 625 GEKTLVTVLTKRSAE----ELARFLDARGVPAAWLHSDLKPVERLEAIDGLRNGQYDVLIGCNMLREGLDLPEVSLVAIIDADKqGFLRsetsLIQTIGRAARHVDGTA 729
                 456888888888887....5666667777899************************************************99984444434449*******98887765 PP

>> TIGR02573  LcrG_PcrG: type III secretion protein LcrG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.7   0.1   0.00011     0.042      13      74 ..     697     761 ..     692     769 .. 0.79

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 0.00011
   TIGR02573  13 lairdsdeRakllqe..lleglGlapea..geklfggleaelvkaaeqeLleevkRrRsrqpqqge 74 
                 +ai d+d+ + l +e  l++ +G a+    g+ l+  ++   + +a +  ++e +RrR rq+q+ e
  MMETSP1137-20121227|2917_1 697 VAIIDADKQGFLRSEtsLIQTIGRAARHvdGTALL-YTQSGVISDAMRAAIDETERRRTRQQQHNE 761
                 6999****99999986689****998651144555.56678999**************99999765 PP

>> TIGR00614  recQ_fam: ATP-dependent DNA helicase, RecQ family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0       1.9     7e+02      31      63 ..     136     168 ..     127     176 .. 0.78
   2 ?   10.3   0.0   0.00012     0.046     214     351 ..     612     755 ..     559     767 .. 0.73

  Alignments for each domain:
  == domain 1    score: -3.5 bits;  conditional E-value: 1.9
   TIGR00614  31 vvmatGgGksLCyqlpavvsdgltlvisPLisL 63 
                 +  atG Gk      +   +++ tl i+P   L
  MMETSP1137-20121227|2917_1 136 LKGATGTGKTFVMAQTIAALNKPTLLIAPNKVL 168
                 44599****999988888899999999996655 PP

  == domain 2    score: 10.3 bits;  conditional E-value: 0.00012
   TIGR00614 214 edllkfiv.kefkgksGiiYClsrkkveqvaaeLqkkglaaaaYhagleesarkevqkkflrdeiqvvvatvafGmGinkpdvRfvihyslpk.....siesYYqesGRaGRDglksecvlfyapaDv.al.lrrllveekdekkr 351
                 + ll  i+ ++  g+  ++  l+++++e++a  L  +g+ aa  h++l+  +r e      + + +v++       G++ p+v  v+  ++ k     s  s  q +GRa R  +  ++ l+y+++ v +  +r  + e +  ++r
  MMETSP1137-20121227|2917_1 612 DHLLAQIEsRRAVGEKTLVTVLTKRSAEELARFLDARGVPAAWLHSDLKPVERLEAIDGLRNGQYDVLIGCNMLREGLDLPEVSLVAIIDADKqgflrSETSLIQTIGRAARH-VDGTA-LLYTQSGViSDaMRAAIDETERRRTR 755
                 555555553455677779999****************************************************************998887762222256799*********6.44445.45555444143133334333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (904 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       175  (0.0426621); expected 82.0 (0.02)
Passed bias filter:                      122  (0.0297416); expected 82.0 (0.02)
Passed Vit filter:                        28  (0.00682594); expected 4.1 (0.001)
Passed Fwd filter:                        11  (0.00268162); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.81u 0.19s 00:00:01.00 Elapsed: 00:00:01.66
# Mc/sec: 718.78
//
Query:       MMETSP1137-20121227|2918_1  [L=204]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (204 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        96  (0.0234032); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.13s 00:00:00.32 Elapsed: 00:00:00.37
# Mc/sec: 727.72
//
Query:       MMETSP1137-20121227|2919_1  [L=600]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      1e-34  117.7   0.0    1.8e-34  116.9   0.0    1.3  1  TIGR01982 UbiB: 2-polyprenylphenol 6-hydroxylase
    1.2e-06   26.0   0.0    1.8e-06   25.4   0.0    1.2  1  TIGR03724 arch_bud32: Kae1-associated kinase Bud32


Domain annotation for each model (and alignments):
>> TIGR01982  UbiB: 2-polyprenylphenol 6-hydroxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  116.9   0.0   8.7e-38   1.8e-34     192     424 ..      54     293 ..      47     302 .. 0.86

  Alignments for each domain:
  == domain 1    score: 116.9 bits;  conditional E-value: 8.7e-38
   TIGR01982 192 tlkeEldlrlEaanaselkenfkndkklivPevywelt.servltlewidgipvsdleklkeaGldlkalaenlvesflkqvlrdgfFHaDlHpGNilvakdgkiialDfGivgrlseeerrylaeillgflerdykrvaevhleagyvpsdtdlaeleqairavgepivgkplkei............sigklLaklfkitekfelevqpeLlLLqKtlltvEGvgrqldpdldlwkvaepvvkk 424
                 ++ +Eld+r Eaana+ +++ ++   +++vP+   e+  + rvl+ ew+ g  ++ l + ++      ++a+  ve + +  l  g+ HaD+H+GNi+++  g++++lDfG++++++++  +++a+ ++++l++d + +++  + +g+v +  + +e e++   +++  v++ + e+            ++g+l + lf++ +++el ++p +lLL++t+lt+EGv+ ++dpd++++++a p+  +
  MMETSP1137-20121227|2919_1  54 SVLQELDFRNEAANAEAFAKSVAYLGYVTVPAPLHEYIpGPRVLVSEWVHGKHMNSLPADQAF-----NMAAMAVEAVTAGLLLTGIVHADPHEGNIMLDDSGRLVFLDFGLMSSVDPDIMEAFADGIQAVLNKDWHSLVHAFIATGFVGNPLRYREVENEG-DFVDGTVEQMAAELkakmeaadgglsRFGALSTVLFDMGKRWELYTPPYVLLLIRTFLTLEGVVAKVDPDFNIYEAALPWAIR 293
                 5679******************************9997478**********999998876665.....67778899999999***************************************************************************99874.4445555555554422122222233348899999*********************************************9644 PP

>> TIGR03724  arch_bud32: Kae1-associated kinase Bud32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.4   0.0   8.8e-10   1.8e-06      42     165 ..      64     193 ..      56     223 .. 0.68

  Alignments for each domain:
  == domain 1    score: 25.4 bits;  conditional E-value: 8.8e-10
   TIGR03724  42 eRtrkEarllseakkagvntPvvy.dvdpeekkivmeyiegkklkdlleekelellke.vGelvgklHkagivhgDlttsNiiv.kddklyliDfGLgkk..skevedkavDlh.vlkrslestheelae 165
                 e   +Ea + s a+   v++P+++ ++ p    +v e ++gk+++ l  ++  +++ + v  +++ l  +givh D++  Ni++ ++++l+++DfGL +    + +e  a  ++ vl++  +s+ + +  
  MMETSP1137-20121227|2919_1  64 EAANAEAFAKSVAYLGYVTVPAPLhEYIPGPRVLVSEWVHGKHMNSLPADQAFNMAAMaVEAVTAGLLLTGIVHADPHEGNIMLdDSGRLVFLDFGLMSSvdPDIMEAFADGIQaVLNKDWHSLVHAFIA 193
                 55555665555666666777776525667778999************999887666551555667899****************55789*******9665223334555555532556666665555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (600 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       119  (0.0290102); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.15s 00:00:00.55 Elapsed: 00:00:00.62
# Mc/sec: 1277.31
//
Query:       MMETSP1137-20121227|2920_1  [L=217]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.6e-17   60.6   1.7    1.1e-16   58.5   1.1    1.8  1  TIGR00115 tig: trigger factor


Domain annotation for each model (and alignments):
>> TIGR00115  tig: trigger factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.5   1.1   2.7e-20   1.1e-16     214     338 ..       5     132 ..       2     182 .. 0.84

  Alignments for each domain:
  == domain 1    score: 58.5 bits;  conditional E-value: 2.7e-20
   TIGR00115 214 aeelagkeaefkvtvkevkekelpelddefakelgefetleelkakirkqleeekkeeskaklkealldkLvekn..efelPealveqeierlleelekqlqqqgidleeylkks.eeelreelkeeA 338
                 ++elagkea+f v   +v++++lp  +d+fa++++      el ak+r+ ++ e+++ ++++  +++  +L++k+  +fe+Pe+l+eq  + +++ +  +++++g   e++++ + +e+++  l   A
  MMETSP1137-20121227|2920_1   5 VPELAGKEAVFAVSCLKVQRRVLPPTTDDFADKVKSGMLWTELDAKLREGVQAEADSLQRRATHREIERALIAKLpdDFEVPETLLEQVGKERFAAMLADMRERGAGDEQLKELIsKENYDRYLAXLA 132
                 689********************************877889**********************************999***************************99999877765444444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (217 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       128  (0.0312043); expected 82.0 (0.02)
Passed bias filter:                       97  (0.023647); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.22u 0.12s 00:00:00.34 Elapsed: 00:00:00.42
# Mc/sec: 681.94
//
Query:       MMETSP1137-20121227|2921_1  [L=372]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (372 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        81  (0.0197465); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.13s 00:00:00.41 Elapsed: 00:00:00.45
# Mc/sec: 1091.11
//
Query:       MMETSP1137-20121227|2922_1  [L=505]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (505 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       119  (0.0290102); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.15s 00:00:00.51 Elapsed: 00:00:00.49
# Mc/sec: 1360.30
//
Query:       MMETSP1137-20121227|2923_1  [L=317]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        1.2    7.1  10.1       0.17    9.8   0.2    2.5  2  TIGR04117 Syntroph_Cxxx: Cys-Xaa-Xaa-Xaa repeat radical SAM target protein


Domain annotation for each model (and alignments):
>> TIGR04117  Syntroph_Cxxx: Cys-Xaa-Xaa-Xaa repeat radical SAM target protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   3.1     0.043   1.8e+02      59      82 ..       6      29 ..       1      34 [. 0.79
   2 ?    9.8   0.2   4.2e-05      0.17      28      89 ..     223     279 ..     194     287 .. 0.71

  Alignments for each domain:
  == domain 1    score: 0.2 bits;  conditional E-value: 0.043
   TIGR04117 59 asicsggcseacsgctdGcsgscs 82
                ++ c +g +++cs c +  s  c 
  MMETSP1137-20121227|2923_1  6 TQQCYSGTYGTCSRCDERGSCLCP 29
                578999999***999987777775 PP

  == domain 2    score: 9.8 bits;  conditional E-value: 4.2e-05
   TIGR04117  28 latagkiiiPtlGilGlslaklspravaadcasicsggcseacsgctdGcsgscsgtcertc 89 
                 +++ g +i+ +lG+l + l ++s +a  a   si +   s +    ++Gcs +  +tc r+ 
  MMETSP1137-20121227|2923_1 223 ITNLGSVIVVSLGVLRFWLRSKSLQATFAR--SIVTLEASLTVA--SGGCSQA-MATCRRAS 279
                 567899**********99999988877665..444444444443..4455443.44666654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (317 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       160  (0.0390054); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.27u 0.11s 00:00:00.38 Elapsed: 00:00:00.43
# Mc/sec: 973.04
//
Query:       MMETSP1137-20121227|2924_1  [L=650]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.7e-13   46.3  28.4    1.3e-11   42.6   5.1    3.6  3  TIGR00880 2_A_01_02: multidrug resistance protein
    1.9e-08   31.5   0.8    1.9e-08   31.5   0.6    2.6  3  TIGR00881 2A0104: phosphoglycerate transporter family protein
      1e-06   25.7   0.5      1e-06   25.7   0.4    2.0  2  TIGR00898 2A0119: cation transport protein
    8.4e-05   20.0   2.5    8.4e-05   20.0   1.7    2.1  3  TIGR00710 efflux_Bcr_CflA: drug resistance transporter, Bcr/CflA subfamily
    0.00022   18.1   9.0    0.00022   18.1   6.2    2.5  2  TIGR00895 2A0115: MFS transporter, aromatic acid:H+ symporter (AAHS) family


Domain annotation for each model (and alignments):
>> TIGR00880  2_A_01_02: multidrug resistance protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.6   5.1   1.6e-14   1.3e-11       3     140 ..     113     248 ..     107     249 .. 0.88
   2 ?   -2.0   0.2      0.94   7.7e+02      91     108 ..     424     441 ..     415     447 .. 0.58
   3 !   13.3   4.7   1.8e-05     0.014      51     134 ..     527     613 ..     463     625 .. 0.87

  Alignments for each domain:
  == domain 1    score: 42.6 bits;  conditional E-value: 1.6e-14
   TIGR00880   3 llagyAlgqlvvsplsglltdrvGrkpvllvglfifvlsqllfalssnitvliiarilqGfgaaaalvagaaliadiikeeersvalgllsagialgpilGpllGavla....qalgwralflilallallafilllfllpe 140
                 +++g +l+ + +++ s+    + Grk v+ +gl+ +v++ql+f +s ++ + + ar+l Gf+ a++   g a   d +++ + ++a++ ++ +  +g i Gp++G++l     +++ w ++ l+ +++al+ ++++ + lpe
  MMETSP1137-20121227|2924_1 113 FMVGRGLSSFHLGLXSD----KHGRKAVIQLGLVSCVVFQLAFGVSPTFGLSLTARFLMGFFNAIVGREGDAA-GD-VPAXQQAAAMSAIAGMWGAGQIAGPAAGGLLWsesaPVTPWFWPNLLGVAIALAGIAAVHVYLPE 248
                 45566666666666666....*********************************************9999663.44.68889999***********************9888888999999999999999999999999988 PP

  == domain 2    score: -2.0 bits;  conditional E-value: 0.94
   TIGR00880  91 llsagialgpilGpllGa 108
                  ++a+ +++++l++ lG 
  MMETSP1137-20121227|2924_1 424 AAVAASTVALLLAISLGD 441
                 344555555555555554 PP

  == domain 3    score: 13.3 bits;  conditional E-value: 1.8e-05
   TIGR00880  51 itvliiarilqGfgaaaalvagaaliadiikeeersvalgllsagialgpilGpllGavla...qalgwralflilallallafill 134
                 ++vl+   + q +++a++++++  +i   +++e+r+++ gl +++ +    +Gp lGavl+   +  gw+++ + + ++ +l+++l+
  MMETSP1137-20121227|2924_1 527 LAVLMAHYAAQRCIGATCFTSIFLVINNSSTREYRGRVNGLNMSVSSGFKAVGPTLGAVLFawsMTNGWSIPPFNVYFTFILSAVLM 613
                 578888899999*************************************************66555688877666666666655554 PP

>> TIGR00881  2A0104: phosphoglycerate transporter family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.5   0.6   2.4e-11   1.9e-08      33     100 ..     107     174 ..      74     284 .. 0.72
   2 ?   -0.8   1.3      0.16   1.3e+02     285     359 ..     461     532 ..     448     548 .. 0.72
   3 ?    0.2   0.3     0.079        65      81     194 ..     522     635 ..     503     648 .. 0.62

  Alignments for each domain:
  == domain 1    score: 31.5 bits;  conditional E-value: 2.4e-11
   TIGR00881  33 GlllsafsiaYgiskfvvgvvsDrvsarvflaigLilvaivnlflgfssslwvliallalnGlfqglg 100
                 G++ls+f++  g+s f  g+ sD+ + ++++ +gL+ + + +l +g+s+++ + + +++l G+f+++ 
  MMETSP1137-20121227|2924_1 107 GFVLSSFMVGRGLSSFHLGLXSDKHGRKAVIQLGLVSCVVFQLAFGVSPTFGLSLTARFLMGFFNAIV 174
                 9***************************************************************9874 PP

  == domain 2    score: -0.8 bits;  conditional E-value: 0.16
   TIGR00881 285 aplavifmaliivsllvywlivaanklvvlillfvlGflvyGpilligvaaselapkkaiGtaaglvglfaylgg 359
                 a++av+ +al+ +  ++y + +a      + +lf+++ l++G  +l+  + s la + +    +  v l+a l++
  MMETSP1137-20121227|2924_1 461 AVMAVAGVALVAFQFGIYPKLAARA---SATFLFSAASLSNGALALTTPLLSVLARNVLTDGGKHSVALLAVLMA 532
                 5677788888888888888855555...57799**********99998887777776666555555556666655 PP

  == domain 3    score: 0.2 bits;  conditional E-value: 0.079
   TIGR00881  81 sslwvliallalnGlfqglgwppcgrl..ltkwfsrserGtvvaiwnishnvgg.allpplvllaialllswhvvfivpgiiaiivslilllllrdspqsvglpkleelrneekeed 194
                  s+++l++l+a  +    +g  + +++  + +  s +e+ + v  +n+s   g  a+ p l ++ +a+++++     +p    + + +il ++l +s  + g++ l  ++n+  ee 
  MMETSP1137-20121227|2924_1 522 HSVALLAVLMAHYAAQRCIGATCFTSIflVINNSSTREYRGRVNGLNMSVSSGFkAVGPTLGAVLFAWSMTNG--WSIPP-FNVYFTFILSAVLMGSTSALGVRWLKADYNRSAEEI 635
                 4778888888888888888877777641134444555544444445666555541333433333444444443..55666.689999999999999999999999988888884332 PP

>> TIGR00898  2A0119: cation transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.7   0.4   1.2e-09     1e-06     128     194 ..     106     172 ..      36     176 .. 0.85
   2 ?   -2.9   0.2      0.58   4.8e+02     474     501 ..     414     441 ..     407     444 .. 0.79

  Alignments for each domain:
  == domain 1    score: 25.7 bits;  conditional E-value: 1.2e-09
   TIGR00898 128 vkltqsvvfvGvLlGslvlGqlsDrfGRkkvLllstlvtavsgvltafspnytvflvlrlLvGvgia 194
                 +  + s+++vG  l+s+ lG  sD+ GRk v+ l  +   v+ +   +sp++   l  r+L G++ a
  MMETSP1137-20121227|2924_1 106 AGFVLSSFMVGRGLSSFHLGLXSDKHGRKAVIQLGLVSCVVFQLAFGVSPTFGLSLTARFLMGFFNA 172
                 567789**********************************************************975 PP

  == domain 2    score: -2.9 bits;  conditional E-value: 0.58
   TIGR00898 474 lflplvifgvlallagllsllLPetkgv 501
                   l + + g++a+ a+ ++llL +++g 
  MMETSP1137-20121227|2924_1 414 IHLLALLLGAAAVAASTVALLLAISLGD 441
                 5667788999999999999999998886 PP

>> TIGR00710  efflux_Bcr_CflA: drug resistance transporter, Bcr/CflA subfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   1.7     1e-07   8.4e-05      45     110 ..     109     174 ..      65     257 .. 0.80
   2 ?   -3.9   1.0       1.8   1.5e+03      77      86 ..     460     469 ..     418     512 .. 0.52
   3 ?   -2.7   0.4      0.77   6.3e+02     102     155 ..     536     589 ..     522     613 .. 0.68

  Alignments for each domain:
  == domain 1    score: 20.0 bits;  conditional E-value: 1e-07
   TIGR00710  45 tltlyllglavgqLllGplsDsyGRkpvlLlgllvfalsslvlalsenietllvlRflqafgasaa 110
                  l+++++g +++   lG  sD+ GRk v+ lgl+  ++  l+  +s++    l +Rfl +f+ ++ 
  MMETSP1137-20121227|2924_1 109 VLSSFMVGRGLSSFHLGLXSDKHGRKAVIQLGLVSCVVFQLAFGVSPTFGLSLTARFLMGFFNAIV 174
                 699**********************************************************98764 PP

  == domain 2    score: -3.9 bits;  conditional E-value: 1.8
   TIGR00710  77 llvfalsslv 86 
                   v a++ ++
  MMETSP1137-20121227|2924_1 460 XAVMAVAGVA 469
                 3333333333 PP

  == domain 3    score: -2.7 bits;  conditional E-value: 0.77
   TIGR00710 102 lqafgasaalVisqalvrDiyakeelskvysilmlllalaPllapliGgyvlvf 155
                  q + ++ +  +++ ++  + ++e   +v ++ m++     +++p +G+ +  +
  MMETSP1137-20121227|2924_1 536 AQRCIGATCFTSIFLVINNSSTREYRGRVNGLNMSVSSGFKAVGPTLGAVLFAW 589
                 455555555555555555666666666777777888777888888888888777 PP

>> TIGR00895  2A0115: MFS transporter, aromatic acid:H+ symporter (AAHS) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   6.2   2.6e-07   0.00022      53     202 ..     105     256 ..      46     286 .. 0.76
   2 ?   -1.1   1.1      0.19   1.5e+02     119     162 ..     540     588 ..     454     615 .. 0.64

  Alignments for each domain:
  == domain 1    score: 18.1 bits;  conditional E-value: 2.6e-07
   TIGR00895  53 elGfllsagLiGmvlGallfgplaDrigRkrvllvsillfsvftlasalatnvtqLlvlRflagl..GlGgllpnliaLvsEyapkrfratvvglvavGyaiGaavggllaallipafgWrslflvggiiplllllllikvLpEsikflvek 202
                  +Gf+ls+ ++G  l ++ +g  +D+ gRk v+ ++++   vf la +++ ++   l +Rfl g    + g  + +   v     +   + ++g+  +G   G a ggll +   p+  W    l+g +i+l  ++ +++ LpEs +   +k
  MMETSP1137-20121227|2924_1 105 YAGFVLSSFMVGRGLSSFHLGLXSDKHGRKAVIQLGLVSCVVFQLAFGVSPTFGLSLTARFLMGFfnAIVGREGDAAGDVPAXQQAAAMSAIAGMWGAGQIAGPAAGGLLWSESAPVTPWFWPNLLGVAIALAGIAAVHVYLPESKSSPPKK 256
                 489**************************************************99999****99733344444445444555555566677889999999999999****9999999999998899988999999**********8755555 PP

  == domain 2    score: -1.1 bits;  conditional E-value: 0.19
   TIGR00895 119 lGgllpnliaLvsEyapkr.fratvvgl...vavGy.aiGaavggllaa 162
                 +G+++   i Lv   +++r +r+ v gl   v +G+ a+G ++g++l a
  MMETSP1137-20121227|2924_1 540 IGATCFTSIFLVINNSSTReYRGRVNGLnmsVSSGFkAVGPTLGAVLFA 588
                 4444444444444444443345555444211334552355555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (650 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       173  (0.0421745); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.50u 0.18s 00:00:00.68 Elapsed: 00:00:00.63
# Mc/sec: 1361.79
//
Query:       MMETSP1137-20121227|2925_1  [L=571]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   4.7e-196  651.1   0.5   5.7e-196  650.9   0.3    1.0  1  TIGR01243 CDC48: AAA family ATPase, CDC48 subfamily
     2e-128  426.4   0.9    1.7e-79  265.5   0.0    2.0  2  TIGR01242 26Sp45: 26S proteasome subunit P45 family
   1.6e-121  404.3   0.6    1.2e-74  249.7   0.0    2.0  2  TIGR01241 FtsH_fam: ATP-dependent metallopeptidase HflB
    4.5e-94  313.8   1.9    1.2e-64  216.7   0.0    3.1  3  TIGR03689 pup_AAA: proteasome ATPase
    6.2e-19   65.8   0.0    8.6e-12   42.2   0.0    2.2  2  TIGR03922 T7SS_EccA: type VII secretion AAA-ATPase EccA
    1.3e-11   41.9   0.0    2.4e-06   24.6   0.0    2.7  3  TIGR00635 ruvB: Holliday junction DNA helicase RuvB
      1e-07   29.1   0.0    5.4e-06   23.5   0.0    2.3  2  TIGR02881 spore_V_K: stage V sporulation protein K
    2.3e-07   28.0   0.1     0.0015   15.5   0.0    3.4  4  TIGR00382 clpX: ATP-dependent Clp protease, ATP-binding subunit ClpX
      1e-05   22.5   0.5       0.14    8.9   0.0    3.5  3  TIGR00390 hslU: ATP-dependent protease HslVU, ATPase subunit
    1.2e-05   22.8   0.0     0.0037   14.6   0.0    2.4  2  TIGR02640 gas_vesic_GvpN: gas vesicle protein GvpN
    3.2e-05   21.6   0.1      0.077   10.6   0.0    2.5  2  TIGR01313 therm_gnt_kin: carbohydrate kinase, thermoresistant glucokinase family
    0.00011   19.7   0.0      0.071   10.4   0.0    2.4  2  TIGR03420 DnaA_homol_Hda: DnaA regulatory inactivator Hda
    0.00017   17.8   1.0        0.1    8.6   0.0    3.3  4  TIGR02639 ClpA: ATP-dependent Clp protease ATP-binding subunit ClpA
    0.00019   17.9   0.1     0.0013   15.1   0.0    2.0  2  TIGR00763 lon: ATP-dependent protease La
    0.00057   17.8   0.8       0.27    9.0   0.0    3.2  3  TIGR02173 cyt_kin_arch: putative cytidylate kinase
    0.00061   16.6   1.6     0.0071   13.1   0.0    3.1  4  TIGR02928 TIGR02928: orc1/cdc6 family replication initiation protein
     0.0044   13.5   0.4      0.012   12.1   0.0    1.9  3  TIGR02902 spore_lonB: ATP-dependent protease LonB
     0.0077   13.4   0.0      0.015   12.4   0.0    1.4  1  TIGR02880 cbbX_cfxQ: CbbX protein
     0.0098   13.4   0.4      0.028   11.9   0.0    1.8  2  TIGR01351 adk: adenylate kinases
  ------ inclusion threshold ------
      0.013   12.4   0.1       0.57    7.0   0.0    2.6  2  TIGR00362 DnaA: chromosomal replication initiator protein DnaA
      0.015   12.7   0.1      0.077   10.4   0.0    2.2  2  TIGR00678 holB: DNA polymerase III, delta' subunit
       0.02   11.3   0.3       0.05   10.0   0.0    1.8  2  TIGR00368 TIGR00368: Mg chelatase-like protein
       0.03   10.6   0.0       0.15    8.3   0.0    2.0  2  TIGR02903 spore_lon_C: ATP-dependent protease, Lon family


Domain annotation for each model (and alignments):
>> TIGR01243  CDC48: AAA family ATPase, CDC48 subfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  650.9   0.3  3.2e-198  5.7e-196     221     729 ..       1     511 [.       1     514 [. 0.97

  Alignments for each domain:
  == domain 1    score: 650.9 bits;  conditional E-value: 3.2e-198
   TIGR01243 221 pgtgktllakavaneagayfiaingpeimskyygeseerlreifkeaeenapsiifideidaiapkreevtgevekrvvaqlltlmdglkgrgkvivigatnrpdaldpalrrpgrfdreieigvpdkegrkeilqihtrnmplaedvdldklaevthgfvgadlaalakeaamaalrrllregkidleaeeipkevleelkvtkkdfkealkmvepsalrevlvevpnvkwediggleevkqelreavewplkakevfeklgirppkgvllfgppgtgktllakavatesganfiavrgpeilskwvgesekaireifrkarqaapaiifldeidaiapargadlsea..vtdrivnqllteldgleensdvvviaatnrpdildpallrpgrldrlilvpapdeearleifkihtrslplaedvdleelakktegytgadieavvreaalaalresv.....ksvakekleaeekeilkdlkvkkkdflealkkvkpsvskedlrvyeklakel 729
                 pg gkt++akava e+ga+f  ingpeimsk  gese +lr+ f++ae    +iifide+daiap+r+++ geve+r+v+ql+tlmdglk + +v+++ atnrp++++palrr grfd e++i vpd  gr +il+i+tr+m +++dvdl+ +a  + g+ gadla    eaam ++r  l+  ++dlea+++p++ l++l ++ +  +eal+  +ps+lre  +evpn+ wediggle+vk+elre v++p+++   fe++g++p kgvl++gppg gktllakava+e +anfi+v+gpe+l++w gese ++re+f karqa+p++if+de+d+ia arga  + a    dr++nq+lte+dg+   + v vi+atnrpdildpa++rpgrld+li++p+pd e+rl if+   r+ pla+dvdle++a+ te ++gadi  +++ a+ +a+re +       +a ek  +   e   d k+  ++f+ ++k  + svsk +l +y k+ k+l
  MMETSP1137-20121227|2925_1   1 PGCGKTMIAKAVAAETGAHFTLINGPEIMSKAAGESESNLRKAFEDAEX---AIIFIDELDAIAPRRDKTQGEVERRIVSQLITLMDGLKPKSQVVLMAATNRPNTIEPALRRFGRFDLELNIPVPDEAGRLDILRIKTRDMRMSPDVDLKAVAADSQGYCGADLAQTIFEAAMLCVREQLP--SLDLEADKLPQQTLDKLIISPDHVREALRLTNPSTLRETAIEVPNISWEDIGGLEDVKRELRELVQYPVQYAAKFEQFGMNPSKGVLFYGPPGCGKTLLAKAVASECKANFISVKGPELLTQWFGESEANVRELFDKARQASPCVIFFDEMDSIAKARGAGGGGAseAGDRVINQILTEIDGVGARKSVFVIGATNRPDILDPAIMRPGRLDQLIYIPVPDYESRLSIFRACLRKSPLADDVDLEHMANITEDFSGADITEICQRACKLAIREEIdeqeaAEAAAEKAGKPLPEPKTDGKLSSRHFEASMKTARRSVSKAELARYLKFRKDL 511
                 9**********************************************95...8*********************************************************************************************************************************..***************************************************************************************************************************************************************9876443499********************************************************************************************************9955544455666776667777999*****************************99875 PP

>> TIGR01242  26Sp45: 26S proteasome subunit P45 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  159.5   0.2   1.5e-49   2.6e-47     165     348 ..       1     178 [.       1     192 [. 0.94
   2 !  265.5   0.0   9.3e-82   1.7e-79     114     350 ..     220     456 ..     209     466 .. 0.96

  Alignments for each domain:
  == domain 1    score: 159.5 bits;  conditional E-value: 1.5e-49
   TIGR01242 165 pGtGktllakavaeetnatfirvvgselvkkyiGeGarlvrevfklakekapsiifideidaiaakrldsstsGdrevqrtllqllaeldGfdprgnvkviaatnrldildpallrpGrfdrlievplpdleGrleilkihtrkmklaedvdleelaklteGasGadlkaivteaGmfaireer 348
                 pG+Gkt++akava et a f  + g e++ k  Ge  + +r+ f+ a     +iifide+daia +r +  t G+ e +r + ql++ +dG++p+ +v ++aatnr++ ++pal r Grfd  +++p+pd+ Grl+il+i+tr m++++dvdl+++a  ++G  Gadl   + ea m  +re+ 
  MMETSP1137-20121227|2925_1   1 PGCGKTMIAKAVAAETGAHFTLINGPEIMSKAAGESESNLRKAFEDAE---XAIIFIDELDAIAPRRDK--TQGEVE-RRIVSQLITLMDGLKPKSQVVLMAATNRPNTIEPALRRFGRFDLELNIPVPDEAGRLDILRIKTRDMRMSPDVDLKAVAADSQGYCGADLAQTIFEAAMLCVREQL 178
                 9*******************************************9875...58*************965..666655.47788**************************************************************************************************975 PP

  == domain 2    score: 265.5 bits;  conditional E-value: 9.3e-82
   TIGR01242 114 eerpevsyediGGlekqlreireavelplkkpelfeevGieppkGvllyGppGtGktllakavaeetnatfirvvgselvkkyiGeGarlvrevfklakekapsiifideidaiaakrldsstsGdrevqrtllqllaeldGfdprgnvkviaatnrldildpallrpGrfdrlievplpdleGrleilkihtrkmklaedvdleelaklteGasGadlkaivteaGmfaireerdk 350
                  e p++s+ediGGle+  re+re v+ p++    fe+ G++p kGvl+yGppG+Gktllakava+e +a fi v g el+ ++ Ge    vre+f+ a++ +p++if de+d+ia  r     +     +r + q+l+e+dG  +r  v vi+atnr+dildpa++rpGr+d+li +p+pd+e rl i++   rk  la+dvdle++a++te +sGad+  i+  a   airee d+
  MMETSP1137-20121227|2925_1 220 IEVPNISWEDIGGLEDVKRELRELVQYPVQYAAKFEQFGMNPSKGVLFYGPPGCGKTLLAKAVASECKANFISVKGPELLTQWFGESEANVRELFDKARQASPCVIFFDEMDSIAKARGAGGGGASEAGDRVINQILTEIDGVGARKSVFVIGATNRPDILDPAIMRPGRLDQLIYIPVPDYESRLSIFRACLRKSPLADDVDLEHMANITEDFSGADITEICQRACKLAIREEIDE 456
                 688****************************************************************************************************************999887777777789*******************************************************************************************************9765 PP

>> TIGR01241  FtsH_fam: ATP-dependent metallopeptidase HflB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  153.1   0.3   1.3e-47   2.4e-45      98     286 ..       1     183 [.       1     211 [. 0.91
   2 !  249.7   0.0   6.7e-77   1.2e-74      47     286 ..     219     459 ..     200     471 .. 0.94

  Alignments for each domain:
  == domain 1    score: 153.1 bits;  conditional E-value: 1.3e-47
   TIGR01241  98 PGtGktLlakavaGeagvpffsisGsdfvemfvGvGasrvrDlfeqakknaPciifiDeiDavGrkrgaglgggndereqtLnqlLvemDGfetnegvivlaatnrpdvLDkaLlrPGrfDrqvvvdkPdlkgreeilkvhakkvklaeevdlkkvarrtpGfsGadlanlvneaallaarknkkevtl 286
                 PG Gkt++akava e g  f  i G + +    G   s +r  fe+a     +iifiDe+Da+  +r ++ g+      + + ql++ mDG++ + +v+++aatnrp+ +++aL r GrfD ++++  Pd +gr +il++ +++++++++vdlk+va    G+ Gadla  + eaa+l++r++  +++l
  MMETSP1137-20121227|2925_1   1 PGCGKTMIAKAVAAETGAHFTLINGPEIMSKAAGESESNLRKAFEDAEX---AIIFIDELDAIAPRRDKTQGE---VERRIVSQLITLMDGLKPKSQVVLMAATNRPNTIEPALRRFGRFDLELNIPVPDEAGRLDILRIKTRDMRMSPDVDLKAVAADSQGYCGADLAQTIFEAAMLCVREQLPSLDL 183
                 9*********************************************986...7**************995443...3346899**************************************************************************************************99776654 PP

  == domain 2    score: 249.7 bits;  conditional E-value: 6.7e-77
   TIGR01241  47 eeekvkvtfkdvaGideakeelveivdf.LknpkkftklGakiPkGvllvGpPGtGktLlakavaGeagvpffsisGsdfvemfvGvGasrvrDlfeqakknaPciifiDeiDavGrkrgaglgggndereqtLnqlLvemDGfetnegvivlaatnrpdvLDkaLlrPGrfDrqvvvdkPdlkgreeilkvhakkvklaeevdlkkvarrtpGfsGadlanlvneaallaarknkkevtl 286
                 + e ++++++d+ G++++k+el e+v++ ++ + kf+++G    kGvl++GpPG GktLlakava e +  f+s+ G +++  + G   + vr+lf++a++++Pc+if De+D++ ++rgag gg+ +  ++ +nq+L+e+DG ++++ v v+ atnrpd+LD+a++rPGr+D+ + +  Pd++ r +i++  ++k  la++vdl+++a+ t  fsGad+  ++  a+ la r++ +e ++
  MMETSP1137-20121227|2925_1 219 AIEVPNISWEDIGGLEDVKRELRELVQYpVQYAAKFEQFGMNPSKGVLFYGPPGCGKTLLAKAVASECKANFISVKGPELLTQWFGESEANVRELFDKARQASPCVIFFDEMDSIAKARGAGGGGASEAGDRVINQILTEIDGVGARKSVFVIGATNRPDILDPAIMRPGRLDQLIYIPVPDYESRLSIFRACLRKSPLADDVDLEHMANITEDFSGADITEICQRACKLAIREEIDEQEA 459
                 4567899*********************7899*********************************************************************************************************************************************************************************************************87554333 PP

>> TIGR03689  pup_AAA: proteasome ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.5   0.3   2.4e-28   4.2e-26     225     408 ..       1     168 [.       1     187 [. 0.83
   2 !  216.7   0.0   6.9e-67   1.2e-64     148     388 ..     194     421 ..     175     431 .. 0.88
   3 !    6.2   0.0    0.0044      0.78     436     465 ..     431     460 ..     418     469 .. 0.80

  Alignments for each domain:
  == domain 1    score: 89.5 bits;  conditional E-value: 2.4e-28
   TIGR03689 225 PGcGktliakavanslaekvaedgeaksyflnikGPellnkyvGeterqirliferarekaaegrPvvvffdemdslfrtrGsGvssdvettvvPqllaeldGveslenviviGasnredlidPailrPGrldvkirierPdaeaaadilakyltedlPl..eedlaeadgdrea.avealiekvvd 408
                 PGcGkt+iakava+             + f  i GPe+++k  Ge+e ++r  fe a          ++f+de+d++   r      +ve  +v ql++ +dG++  + v+++ a+nr + i+Pa+ r Gr+d+ + i  Pd+++  dil      d+ +  + dl +   d++  + ++l +++ +
  MMETSP1137-20121227|2925_1   1 PGCGKTMIAKAVAAET----------GAHFTLINGPEIMSKAAGESESNLRKAFEDAE-------XAIIFIDELDAIAPRRDK-TQGEVERRIVSQLITLMDGLKPKSQVVLMAATNRPNTIEPALRRFGRFDLELNIPVPDEAGRLDILRIKTR-DMRMspDVDLKAVAADSQGyCGADLAQTIFE 168
                 9***********9643..........457999*******************9998774.......469*********877765.6789*************************************************************975543.4444346788888777665144556666655 PP

  == domain 2    score: 216.7 bits;  conditional E-value: 6.9e-67
   TIGR03689 148 dsllvdl.kaglaleavpkseveelvleevPdvtyadiGGldsqieqirdavelPflhkelyreydlkpPkGvllyGPPGcGktliakavanslaekvaedgeaksyflnikGPellnkyvGeterqirliferarekaaegrPvvvffdemdslfrtrGsG..vssdvettvvPqllaeldGveslenviviGasnredlidPailrPGrldvkirierPdaeaaadilakyltedlPleedl 388
                 d+l++ + +++ al+  + s  +e ++ evP+++++diGGl++   ++r+ v+ P ++ + +++++++p kGvl+yGPPGcGktl+akava+          e k+ f+++kGPell ++ Ge+e ++r +f++ar++    +P v+ffdemds+ ++rG+G   +s+    v+ q+l+e+dGv + + v viGa+nr d++dPai+rPGrld  i i  Pd e+   i+   l ++ Pl++d+
  MMETSP1137-20121227|2925_1 194 DKLIISPdHVREALRLTNPSTLRETAI-EVPNISWEDIGGLEDVKRELRELVQYPVQYAAKFEQFGMNPSKGVLFYGPPGCGKTLLAKAVAS----------ECKANFISVKGPELLTQWFGESEANVRELFDKARQA----SPCVIFFDEMDSIAKARGAGggGASEAGDRVINQILTEIDGVGARKSVFVIGATNRPDILDPAIMRPGRLDQLIYIPVPDYESRLSIFRACLRKS-PLADDV 421
                 677766525677777777777766665.8*************************************************************95..........35678****************************975....7****************9862257888899**********************************************************9998765.776654 PP

  == domain 3    score: 6.2 bits;  conditional E-value: 0.0044
   TIGR03689 436 dlvsGamlanivdrakkaaikdeleggqkg 465
                 +  sGa + +i +ra k ai++e+++++ +
  MMETSP1137-20121227|2925_1 431 EDFSGADITEICQRACKLAIREEIDEQEAA 460
                 3459********************987765 PP

>> TIGR03922  T7SS_EccA: type VII secretion AAA-ATPase EccA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3   0.0     1e-07   1.9e-05     321     413 ..       1      86 [.       1     102 [. 0.87
   2 !   42.2   0.0   4.8e-14   8.6e-12     280     426 ..     232     377 ..     224     382 .. 0.83

  Alignments for each domain:
  == domain 1    score: 21.3 bits;  conditional E-value: 1e-07
   TIGR03922 321 PGtGkttiArvvak.iyaGlgvlrkpevrEvsRadligeyigeseaktnelidkaLggvlFlDEayaLvekrdgakddfGleaidtLLarlEnd 413
                 PG Gkt iA++va    a +++++ pe++        ++  gese +  +  + a   ++F+DE+ a+  +rd+++ ++   ++ +L+  ++  
  MMETSP1137-20121227|2925_1   1 PGCGKTMIAKAVAAeTGAHFTLINGPEIM--------SKAAGESESNLRKAFEDAEXAIIFIDELDAIAPRRDKTQGEVERRIVSQLITLMDGL 86 
                 9*********9975156889***999985........6779***********************************************999864 PP

  == domain 2    score: 42.2 bits;  conditional E-value: 4.8e-14
   TIGR03922 280 Glervkeqvaal.kssvevalvRaerGlavaqrskHlllaGPPGtGkttiArvvakiyaGlgvlrkpevrEvsRadligeyigeseaktnelidkaLgg...vlFlDEayaLvek...rdgakddfGleaidtLLarlEn..dRdrlvviiAGYek 426
                 Gle+vk++++ l +  v+ a   ++ G++    sk +l+ GPPG Gkt +A++va          k + + v+  +l++++ gesea+  el dka +    v+F+DE+ ++ +    + g   + G  +i+++L  ++    R  + vi+A  + 
  MMETSP1137-20121227|2925_1 232 GLEDVKRELRELvQYPVQYAAKFEQFGMN---PSKGVLFYGPPGCGKTLLAKAVASEC-------KANFISVKGPELLTQWFGESEANVRELFDKARQAspcVIFFDEMDSIAKArgaGGGGASEAGDRVINQILTEIDGvgARKSVFVIGATNRP 377
                 89999999976526678999999999996...6899*******************874.......789999***********************98764344**********98743334667899***********9963367777777776555 PP

>> TIGR00635  ruvB: Holliday junction DNA helicase RuvB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.0   1.9e-05    0.0035      39      96 ..       1      63 [.       1      80 [. 0.77
   2 !   24.6   0.0   1.3e-08   2.4e-06      29      67 ..     261     299 ..     226     336 .. 0.73
   3 ?   -2.7   0.0       2.8     5e+02     158     191 ..     432     466 ..     410     470 .. 0.72

  Alignments for each domain:
  == domain 1    score: 14.3 bits;  conditional E-value: 1.9e-05
   TIGR00635 39 PGlGkttlakiiakelgvklkitsgpalekp..gDlaail.tale..egdvlfiDeihrlska 96
                PG Gkt +ak +a+e g++  +++gp++  +  g+  + l  a+e  e  ++fiDe+ ++++ 
  MMETSP1137-20121227|2925_1  1 PGCGKTMIAKAVAAETGAHFTLINGPEIMSKaaGESESNLrKAFEdaEXAIIFIDELDAIAPR 63
                9*************************9853212333333303344115679******999875 PP

  == domain 2    score: 24.6 bits;  conditional E-value: 1.3e-08
   TIGR00635  29 aldhvllyGPPGlGkttlakiiakelgvklkitsgpale 67 
                     vl+yGPPG Gkt lak +a+e +++   ++gp+l 
  MMETSP1137-20121227|2925_1 261 PSKGVLFYGPPGCGKTLLAKAVASECKANFISVKGPELL 299
                 34579*******************************985 PP

  == domain 3    score: -2.7 bits;  conditional E-value: 2.8
   TIGR00635 158 fYseeeleeivkrsakl.leleieeeaaleiarrs 191
                  +s ++++ei +r+ kl +  ei+e++a+e a + 
  MMETSP1137-20121227|2925_1 432 DFSGADITEICQRACKLaIREEIDEQEAAEAAAEK 466
                 46778999999998875367789998888877654 PP

>> TIGR02881  spore_V_K: stage V sporulation protein K
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.0     0.041       7.3      51     143 ..       1      89 [.       1     150 [. 0.66
   2 !   23.5   0.0     3e-08   5.4e-06       8     136 ..     230     354 ..     225     403 .. 0.78

  Alignments for each domain:
  == domain 1    score: 3.4 bits;  conditional E-value: 0.041
   TIGR02881  51 PGtGkttvarllaklfkelnvlskGhlieveradlvGeyiGhtaqktrevikkalGGvlfideayslarGGekdfG...keaidtlvkemedkree 143
                 PG Gkt +a+ +a         +  h+  ++  +++ +  G++  + r+  + a   ++fide  ++a   +k  G   +  + +l+  m+  + +
  MMETSP1137-20121227|2925_1   1 PGCGKTMIAKAVAAE-------TGAHFTLINGPEIMSKAAGESESNLRKAFEDAEXAIIFIDELDAIAPRRDKTQGeveRRIVSQLITLMDGLKPK 89 
                 666777666666542.......23455555666677777888999999999999*********999998888877633356677777777765433 PP

  == domain 2    score: 23.5 bits;  conditional E-value: 3e-08
   TIGR02881   8 lvGleevkelikeiyal.ilinekrkeeglkaekqvlhmifkGnPGtGkttvarllaklfkelnvlskGhlieveradlvGeyiGhtaqktrevi...kkalGGvlfideaysla..rGGekdfGkeaidtlvke 136
                 + Gle+vk+ ++e+  + ++   k ++ g++ +k v   +f G PG Gkt +a+ +a+         k ++i v+  +l+ ++ G++  ++re+    ++a+  v+f de  s+a  rG       ea d ++++
  MMETSP1137-20121227|2925_1 230 IGGLEDVKRELRELVQYpVQYAAKFEQFGMNPSKGV---LFYGPPGCGKTLLAKAVASE-------CKANFISVKGPELLTQWFGESEANVRELFdkaRQASPCVIFFDEMDSIAkaRGAGGGGASEAGDRVINQ 354
                 569**********98883455666667788777765...69************999975.......57899999999***************987222556789******9998622554444445555555443 PP

>> TIGR00382  clpX: ATP-dependent Clp protease, ATP-binding subunit ClpX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.4   0.0    0.0046      0.82     128     200 ..       3      66 ..       1      78 [. 0.62
   2 ?   -4.1   0.0       7.1   1.3e+03     368     393 ..     157     182 ..     137     191 .. 0.77
   3 !   15.5   0.0   8.3e-06    0.0015     120     199 ..     265     338 ..     249     367 .. 0.76
   4 ?    1.6   0.0      0.14        24      30     100 ..     436     506 ..     421     522 .. 0.72

  Alignments for each domain:
  == domain 1    score: 6.4 bits;  conditional E-value: 0.0046
   TIGR00382 128 sGktllaqtlakeldvpfaiadattlteaGyvGedvenillkllqaadydvekaekGiiyideidkiarksen 200
                  Gkt++a+++a+e    f++ +   +      Ge   n+  k         e ae  ii+ide+d ia + ++
  MMETSP1137-20121227|2925_1   3 CGKTMIAKAVAAETGAHFTLINGPEIMSK-AAGESESNL-RK-------AFEDAEXAIIFIDELDAIAPRRDK 66 
                 56666666666666666665555444322.234443332.22.......34678999**********976654 PP

  == domain 2    score: -4.1 bits;  conditional E-value: 7.1
   TIGR00382 368 ktGarglrsiveellldvmfelpsle 393
                   Ga   ++i e+++l v  +lpsl+
  MMETSP1137-20121227|2925_1 157 YCGADLAQTIFEAAMLCVREQLPSLD 182
                 46777788899999999999999986 PP

  == domain 3    score: 15.5 bits;  conditional E-value: 8.3e-06
   TIGR00382 120 illiGptGsGktllaqtlakeldvpfaiadattlteaGyvGedvenillkllqaadydvekaekGiiyideidkiarkse 199
                 +l+ Gp G Gktlla+++a e +  f       l  + + Ge   n+  +l+++a    ++a   +i+ de+d ia+   
  MMETSP1137-20121227|2925_1 265 VLFYGPPGCGKTLLAKAVASECKANFISVKGPELL-TQWFGESEANV-RELFDKA----RQASPCVIFFDEMDSIAKARG 338
                 7889*******************999766665554.35889987775.7898887....57999************9754 PP

  == domain 4    score: 1.6 bits;  conditional E-value: 0.14
   TIGR00382  30 vyicdecielchdileeelgdkkeskeveeeleleelpkpkel.kevldeyviGqeqakkvlsvavynhykr 100
                 + i + c   c+  ++ee  d++e+ e++ e+  + lp+pk   k    ++    ++a++++s a    y +
  MMETSP1137-20121227|2925_1 436 ADITEICQRACKLAIREEI-DEQEAAEAAAEKAGKPLPEPKTDgKLSSRHFEASMKTARRSVSKAELARYLK 506
                 5688999999999999988.667888889999999*****86413333445555666666666666555555 PP

>> TIGR00390  hslU: ATP-dependent protease HslVU, ATPase subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.9   0.0   0.00076      0.14     240     282 ..      42      82 ..       2      93 .. 0.79
   2 !    6.9   0.0     0.003      0.54      48      81 ..     263     296 ..     257     319 .. 0.81
   3 ?    3.1   0.0     0.045       8.1     246     274 ..     320     348 ..     305     367 .. 0.67

  Alignments for each domain:
  == domain 1    score: 8.9 bits;  conditional E-value: 0.00076
   TIGR00390 240 eavdrveesGiifideidkiakkgessgadvsreGvqrdllPi 282
                 +a + +e   iifide+d ia + ++++ +v r  v + l+ +
  MMETSP1137-20121227|2925_1  42 KAFEDAE-XAIIFIDELDAIAPRRDKTQGEVERRIVSQ-LITL 82 
                 4555554.57**************99999999987653.4555 PP

  == domain 2    score: 6.9 bits;  conditional E-value: 0.003
   TIGR00390  48 knilmiGstGvGkteiarrlaklaeaPfikveat 81 
                 k +l  G+ G Gkt +a+ +a   +a fi v   
  MMETSP1137-20121227|2925_1 263 KGVLFYGPPGCGKTLLAKAVASECKANFISVKGP 296
                 7899*************************99865 PP

  == domain 3    score: 3.1 bits;  conditional E-value: 0.045
   TIGR00390 246 eesGiifideidkiakkgessgadvsreG 274
                  +  +if de+d iak     g   s  G
  MMETSP1137-20121227|2925_1 320 ASPCVIFFDEMDSIAKARGAGGGGASEAG 348
                 35579**********98755555555544 PP

>> TIGR02640  gas_vesic_GvpN: gas vesicle protein GvpN
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   0.0     0.012       2.1      31      58 ..       2      29 ..       1      47 [. 0.86
   2 !   14.6   0.0   2.1e-05    0.0037      22      58 ..     263     299 ..     250     311 .. 0.87

  Alignments for each domain:
  == domain 1    score: 5.6 bits;  conditional E-value: 0.012
   TIGR02640 31 GtGktslalhvakkrdrPvvllnGdael 58
                G+Gkt +a +va++ +    l+nG + +
  MMETSP1137-20121227|2925_1  2 GCGKTMIAKAVAAETGAHFTLINGPEIM 29
                9****************99999997655 PP

  == domain 2    score: 14.6 bits;  conditional E-value: 2.1e-05
   TIGR02640  22 ypvhlrGPaGtGktslalhvakkrdrPvvllnGdael 58 
                   v + GP G+Gkt la +va + +   + ++G + l
  MMETSP1137-20121227|2925_1 263 KGVLFYGPPGCGKTLLAKAVASECKANFISVKGPELL 299
                 56889*******************9999999997665 PP

>> TIGR01313  therm_gnt_kin: carbohydrate kinase, thermoresistant glucokinase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.5   0.0    0.0019      0.34       8      34 ..       2      30 ..       1      39 [. 0.79
   2 !   10.6   0.0   0.00043     0.077       3      28 ..     267     292 ..     265     309 .. 0.87

  Alignments for each domain:
  == domain 1    score: 8.5 bits;  conditional E-value: 0.0019
   TIGR01313  8 GsGkstiakelakklgakf..ieGDdlhp 34
                G+Gk+ iak++a++ ga+f  i+G ++ +
  MMETSP1137-20121227|2925_1  2 GCGKTMIAKAVAAETGAHFtlINGPEIMS 30
                9*************996653377776655 PP

  == domain 2    score: 10.6 bits;  conditional E-value: 0.00043
   TIGR01313   3 lmGvaGsGkstiakelakklgakfie 28 
                   G+ G+Gk+ +ak++a++ +a+fi 
  MMETSP1137-20121227|2925_1 267 FYGPPGCGKTLLAKAVASECKANFIS 292
                 56999*****************9984 PP

>> TIGR03420  DnaA_homol_Hda: DnaA regulatory inactivator Hda
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.9   0.0     0.005       0.9      48     183 ..       2     145 ..       1     146 [. 0.61
   2 !   10.4   0.0    0.0004     0.071      37      66 ..     261     290 ..     243     338 .. 0.70

  Alignments for each domain:
  == domain 1    score: 6.9 bits;  conditional E-value: 0.005
   TIGR03420  48 gsGksHLLqAacaaaeea....gksaiylplkelaqllv.evlegleqaelvalDdvealagerewee.........alfdlynrlresgrkllvageaaPaelklrlpDLrtRlawglvfqlkplsdeeklaaLqeraaerGleLpdev 183
                 g+Gk+ + +A++a++ ++    +   i+ +++  ++ ++ +++e + + +++ +D+++a+a +r++ +         +l  l+  l+ + + +l+a+++ P++++ +   Lr      l ++++  +++++l++L+   ++r ++++++v
  MMETSP1137-20121227|2925_1   2 GCGKTMIAKAVAAETGAHftliNGPEIMSKAAGESESNLrKAFEDA-EXAIIFIDELDAIAPRRDKTQgeverrivsQLITLMDGLKPKSQVVLMAATNRPNTIEPA---LRRFGRFDLELNIPVPDEAGRLDILR--IKTRDMRMSPDV 145
                 8999999999998765541111222222223333333332445544.457999*******98776533112222222456666666677889999******998877...66555667888888888899999886..456666666665 PP

  == domain 2    score: 10.4 bits;  conditional E-value: 0.0004
   TIGR03420  37 aerllylwGesgsGksHLLqAacaaaeeag 66 
                  ++ + ++G++g+Gk+ L +A++++++++ 
  MMETSP1137-20121227|2925_1 261 PSKGVLFYGPPGCGKTLLAKAVASECKANF 290
                 4566789*****************998764 PP

>> TIGR02639  ClpA: ATP-dependent Clp protease ATP-binding subunit ClpA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0       0.4        71     497     526 ..       2      31 ..       1      35 [. 0.82
   2 ?   -1.2   0.0      0.51        92     272     291 ..      43      62 ..      29      78 .. 0.75
   3 !    8.6   0.0   0.00056       0.1     485     516 ..     260     291 ..     238     299 .. 0.84
   4 !    5.4   0.0    0.0051      0.91     256     304 ..     300     349 ..     295     361 .. 0.88

  Alignments for each domain:
  == domain 1    score: -0.8 bits;  conditional E-value: 0.4
   TIGR02639 497 GvGktelakqLaeelgvellrfDmseymek 526
                 G Gkt +ak++a+e g ++  ++  e m k
  MMETSP1137-20121227|2925_1   2 GCGKTMIAKAVAAETGAHFTLINGPEIMSK 31 
                 899**********99999987776666655 PP

  == domain 2    score: -1.2 bits;  conditional E-value: 0.51
   TIGR02639 272 eiekeedailfiDeihtivg 291
                   e+ e ai+fiDe+ +i  
  MMETSP1137-20121227|2925_1  43 AFEDAEXAIIFIDELDAIAP 62 
                 45778899******998865 PP

  == domain 3    score: 8.6 bits;  conditional E-value: 0.00056
   TIGR02639 485 kPvgsflfvGptGvGktelakqLaeelgvell 516
                 +P    lf+Gp G Gkt lak++a+e   +++
  MMETSP1137-20121227|2925_1 260 NPSKGVLFYGPPGCGKTLLAKAVASECKANFI 291
                 688889******************99877765 PP

  == domain 4    score: 5.4 bits;  conditional E-value: 0.0051
   TIGR02639 256 tkyrGdfeerlkevveeiekeedailfiDeihtivga.gatsggsldasn 304
                 t++ G+ e+ ++e+ ++ ++ +  ++f De+  i  a ga++gg+ +a +
  MMETSP1137-20121227|2925_1 300 TQWFGESEANVRELFDKARQASPCVIFFDEMDSIAKArGAGGGGASEAGD 349
                 7899*******************************996778888877765 PP

>> TIGR00763  lon: ATP-dependent protease La
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.0      0.24        43     362     381 ..       1      20 [.       1      24 [. 0.87
   2 !   15.1   0.0   7.4e-06    0.0013     346     383 ..     255     292 ..     226     295 .. 0.74

  Alignments for each domain:
  == domain 1    score: 0.1 bits;  conditional E-value: 0.24
   TIGR00763 362 PGVGKtSlaksiAkalnrkf 381
                 PG GKt +ak++A  ++ +f
  MMETSP1137-20121227|2925_1   1 PGCGKTMIAKAVAAETGAHF 20 
                 9************9887776 PP

  == domain 2    score: 15.1 bits;  conditional E-value: 7.4e-06
   TIGR00763 346 klrkklkgkilclvGPPGVGKtSlaksiAkalnrkfvr 383
                 ++ +   +k + ++GPPG GKt lak++A+  + +f+ 
  MMETSP1137-20121227|2925_1 255 EQFGMNPSKGVLFYGPPGCGKTLLAKAVASECKANFIS 292
                 445555567789******************99999975 PP

>> TIGR02173  cyt_kin_arch: putative cytidylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.0     0.058        10       9      27 ..       1      19 [.       1      57 [. 0.80
   2 !    9.0   0.0    0.0015      0.27       6      30 ..     268     292 ..     264     298 .. 0.90
   3 ?    1.2   0.1      0.38        68     100     124 ..     441     465 ..     426     469 .. 0.82

  Alignments for each domain:
  == domain 1    score: 3.9 bits;  conditional E-value: 0.058
   TIGR02173  9 PGsGkttvakilaeklslk 27
                PG Gkt +ak +a + + +
  MMETSP1137-20121227|2925_1  1 PGCGKTMIAKAVAAETGAH 19
                9************987654 PP

  == domain 2    score: 9.0 bits;  conditional E-value: 0.0015
   TIGR02173   6 sGpPGsGkttvakilaeklslklis 30 
                  GpPG Gkt +ak +a++   ++is
  MMETSP1137-20121227|2925_1 268 YGPPGCGKTLLAKAVASECKANFIS 292
                 69****************9999998 PP

  == domain 3    score: 1.2 bits;  conditional E-value: 0.38
   TIGR02173 100 levraeriakrenksltealkeiie 124
                 +  ra ++a+re+++ +ea +  +e
  MMETSP1137-20121227|2925_1 441 ICQRACKLAIREEIDEQEAAEAAAE 465
                 4569999********9999887665 PP

>> TIGR02928  TIGR02928: orc1/cdc6 family replication initiation protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0      0.78   1.4e+02      49      63 ..       1      15 [.       1      20 [. 0.86
   2 ?    0.1   0.1      0.33        60     130     297 ..      49      96 ..      28     109 .. 0.52
   3 !   13.1   0.0     4e-05    0.0071      39      66 ..     261     288 ..     248     298 .. 0.83
   4 ?   -4.0   0.0         6   1.1e+03     128     142 ..     320     334 ..     308     338 .. 0.67

  Alignments for each domain:
  == domain 1    score: -1.1 bits;  conditional E-value: 0.78
   TIGR02928 49 tGtGKtavtkkvlke 63
                +G+GKt+++k+v  e
  MMETSP1137-20121227|2925_1  1 PGCGKTMIAKAVAAE 15
                69********99865 PP

  == domain 2    score: 0.1 bits;  conditional E-value: 0.33
   TIGR02928 130 sliivLDEiDklv.kkeadelLyeLsraeengdlekakvsvigisndlkfleeldervksslseeeivFppYdaeeLrdILeeRaekafkdgvlddeviplvaalaaqehGdaRkAidlLreageiAeeegsekvteehvekAqekiekerllelirglpthsklvLla 297
                  +ii +DE+D +  +                                                                                                                          ++ +   e+  +++l  l+ gl+ +s++vL+a
  MMETSP1137-20121227|2925_1  49 XAIIFIDELDAIApR-------------------------------------------------------------------------------------------------------------------------RDKTQGEVERRIVSQLITLMDGLKPKSQVVLMA 96 
                 444555555555432.........................................................................................................................333333333333344444445555555555555 PP

  == domain 3    score: 13.1 bits;  conditional E-value: 4e-05
   TIGR02928  39 rpsnvliyGktGtGKtavtkkvlkelee 66 
                  ++ vl yG++G+GKt+ +k+v  e ++
  MMETSP1137-20121227|2925_1 261 PSKGVLFYGPPGCGKTLLAKAVASECKA 288
                 34569*****************998765 PP

  == domain 4    score: -4.0 bits;  conditional E-value: 6
   TIGR02928 128 edsliivLDEiDklv 142
                     +i  DE+D++ 
  MMETSP1137-20121227|2925_1 320 ASPCVIFFDEMDSIA 334
                 34467889****984 PP

>> TIGR02902  spore_lonB: ATP-dependent protease LonB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0       2.9   5.2e+02     237     252 ..      94     109 ..      83     110 .. 0.80
   2 !   12.1   0.0   6.7e-05     0.012      82     116 ..     257     292 ..     245     324 .. 0.85
   3 ?   -3.3   0.0       3.1   5.4e+02     236     316 ..     370     453 ..     351     464 .. 0.52

  Alignments for each domain:
  == domain 1    score: -3.3 bits;  conditional E-value: 2.9
   TIGR02902 237 iGattrkpeeippalr 252
                 + a+t +p+ i+palr
  MMETSP1137-20121227|2925_1  94 LMAATNRPNTIEPALR 109
                 5688999********9 PP

  == domain 2    score: 12.1 bits;  conditional E-value: 6.7e-05
   TIGR02902  82 cGpnpqh.viiyGppGvGktaaarlvleeakksaas 116
                  G np + v+ yGppG Gkt  a+ v  e k +  s
  MMETSP1137-20121227|2925_1 257 FGMNPSKgVLFYGPPGCGKTLLAKAVASECKANFIS 292
                 57888653899***************9999988666 PP

  == domain 3    score: -3.3 bits;  conditional E-value: 3.1
   TIGR02902 236 liGattrkpeeippal.r.srcveiffrelekeeik.eiakkaaekiglslekealeliakyas..nGreavnlvqlaaGlalnen 316
                 +iGat r p+ ++pa+ r  r  ++ + ++ + e + +i + +  k  l+ +   le +a+ ++  +G ++ ++ q a+ la+ e+
  MMETSP1137-20121227|2925_1 370 VIGATNR-PDILDPAImRpGRLDQLIYIPVPDYESRlSIFRACLRKSPLADD-VDLEHMANITEdfSGADITEICQRACKLAIREE 453
                 5566543.66666665222244444555554444431344444444333322.223333333321267777777777777777765 PP

>> TIGR02880  cbbX_cfxQ: CbbX protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.4   0.0   8.3e-05     0.015      23     132 ..     229     332 ..     216     379 .. 0.81

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 8.3e-05
   TIGR02880  23 eliglkpvktrireiaalllverlrqklglasaapslhmsftgnpgtgkttvalrmakilhrlgyvrkghlvsvtrddlvgqyightapktkevlkram...ggvlfideayy 132
                 ++ gl+ vk  +re+     v+ + +k +    +ps  + f g pg gkt +a  +a+         k + +sv   +l+ q+ g +    +e++ +a      v+f de   
  MMETSP1137-20121227|2925_1 229 DIGGLEDVKRELRELVQYP-VQYA-AKFEQFGMNPSKGVLFYGPPGCGKTLLAKAVASE-------CKANFISVKGPELLTQWFGESEANVRELFDKARqasPCVIFFDEMDS 332
                 4558889999999987654.4444.444555679******************9998874.......58999***********************9887511157999999765 PP

>> TIGR01351  adk: adenylate kinases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0       1.9   3.4e+02       8      24 ..       1      17 [.       1      32 [. 0.90
   2 !   11.9   0.0   0.00016     0.028       2      29 ..     265     292 ..     264     300 .. 0.93

  Alignments for each domain:
  == domain 1    score: -1.5 bits;  conditional E-value: 1.9
   TIGR01351  8 PGsGKGTqakrlaeklg 24
                PG+GK  +ak +a ++g
  MMETSP1137-20121227|2925_1  1 PGCGKTMIAKAVAAETG 17
                9**********999876 PP

  == domain 2    score: 11.9 bits;  conditional E-value: 0.00016
   TIGR01351   2 lvllGpPGsGKGTqakrlaeklglvhis 29 
                 +++ GpPG+GK   ak +a++++   is
  MMETSP1137-20121227|2925_1 265 VLFYGPPGCGKTLLAKAVASECKANFIS 292
                 789********************99998 PP

>> TIGR00362  DnaA: chromosomal replication initiator protein DnaA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.0     0.082        15     220     295 ..      77     149 ..      27     156 .. 0.76
   2 ?    7.0   0.0    0.0032      0.57     138     164 ..     263     289 ..     248     294 .. 0.81

  Alignments for each domain:
  == domain 1    score: 2.3 bits;  conditional E-value: 0.082
   TIGR00362 220 eeffhtfnalleknkqivltsDrapkelegleeRLkSRfewGLvvdieppdletrlaILkkkaeeeklelpeevle 295
                  ++  +++ l  k++ + +++ + p+ +e    R+  Rf+  L ++i  pd   rl IL+ k++ ++++ + +   
  MMETSP1137-20121227|2925_1  77 SQLITLMDGLKPKSQVVLMAATNRPNTIEPALRRF-GRFD--LELNIPVPDEAGRLDILRIKTRDMRMSPDVDLKA 149
                 45667777788888888888999999999776665.6887..6678889**************9999987766554 PP

  == domain 2    score: 7.0 bits;  conditional E-value: 0.0032
   TIGR00362 138 nPlfiyGgvGlGKTHLlqAigneilkk 164
                 + +++yG  G GKT L +A++ e+ ++
  MMETSP1137-20121227|2925_1 263 KGVLFYGPPGCGKTLLAKAVASECKAN 289
                 45899****************998776 PP

>> TIGR00678  holB: DNA polymerase III, delta' subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0       2.6   4.7e+02       3      23 ..       7      27 ..       2      53 .. 0.68
   2 ?   10.4   0.0   0.00043     0.077      15      37 ..     263     285 ..     252     297 .. 0.87

  Alignments for each domain:
  == domain 1    score: -1.9 bits;  conditional E-value: 2.6
   TIGR00678  3 alkralekgrlahAlLfaGpe 23
                ++++a++ ++ ah  L++Gpe
  MMETSP1137-20121227|2925_1  7 MIAKAVAAETGAHFTLINGPE 27
                445555566666666666665 PP

  == domain 2    score: 10.4 bits;  conditional E-value: 0.00043
   TIGR00678  15 hAlLfaGpeGvGkealaealaka 37 
                 + +Lf+Gp+G+Gk+ la+a+a++
  MMETSP1137-20121227|2925_1 263 KGVLFYGPPGCGKTLLAKAVASE 285
                 679*****************976 PP

>> TIGR00368  TIGR00368: Mg chelatase-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0         2   3.6e+02     220     231 ..       1      12 [.       1      14 [. 0.88
   2 ?   10.0   0.0   0.00028      0.05     213     232 ..     264     283 ..     256     287 .. 0.88

  Alignments for each domain:
  == domain 1    score: -2.7 bits;  conditional E-value: 2
   TIGR00368 220 PGsGktllakrl 231
                 PG Gkt++ak +
  MMETSP1137-20121227|2925_1   1 PGCGKTMIAKAV 12 
                 9********987 PP

  == domain 2    score: 10.0 bits;  conditional E-value: 0.00028
   TIGR00368 213 nllllGPPGsGktllakrlq 232
                  +l+ GPPG Gktllak + 
  MMETSP1137-20121227|2925_1 264 GVLFYGPPGCGKTLLAKAVA 283
                 589*************9886 PP

>> TIGR02903  spore_lon_C: ATP-dependent protease, Lon family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0       0.5        89     317     342 ..      84     109 ..      72     113 .. 0.79
   2 ?    8.3   0.0   0.00085      0.15     176     201 ..     263     288 ..     237     294 .. 0.82

  Alignments for each domain:
  == domain 1    score: -0.8 bits;  conditional E-value: 0.5
   TIGR02903 317 ekGapadfvliGattrdpeeinpalr 342
                 +   p   v++ a+t+ p+ i+palr
  MMETSP1137-20121227|2925_1  84 DGLKPKSQVVLMAATNRPNTIEPALR 109
                 55567777888888999********9 PP

  == domain 2    score: 8.3 bits;  conditional E-value: 0.00085
   TIGR02903 176 qhiilyGppGvGkttaarlaleeakk 201
                 + +++yGppG Gkt  a+ +  e+k 
  MMETSP1137-20121227|2925_1 263 KGVLFYGPPGCGKTLLAKAVASECKA 288
                 5699**************99988875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (571 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       182  (0.0443686); expected 82.0 (0.02)
Passed bias filter:                      164  (0.0399805); expected 82.0 (0.02)
Passed Vit filter:                        50  (0.0121892); expected 4.1 (0.001)
Passed Fwd filter:                        23  (0.00560702); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              23  [number of targets reported over threshold]
# CPU time: 0.78u 0.18s 00:00:00.96 Elapsed: 00:00:00.71
# Mc/sec: 1061.49
//
Query:       MMETSP1137-20121227|2926_1  [L=69]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (69 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        20  (0.00487567); expected 82.0 (0.02)
Passed bias filter:                       17  (0.00414432); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.15s 00:00:00.26 Elapsed: 00:00:00.28
# Mc/sec: 314.04
//
Query:       MMETSP1137-20121227|2927_1  [L=136]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (136 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        94  (0.0229157); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.12s 00:00:00.28 Elapsed: 00:00:00.28
# Mc/sec: 618.98
//
Query:       MMETSP1137-20121227|2928_1  [L=565]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (565 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       117  (0.0285227); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.17s 00:00:00.56 Elapsed: 00:00:00.47
# Mc/sec: 1586.68
//
Query:       MMETSP1137-20121227|2929_1  [L=1454]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1454 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        91  (0.0221843); expected 82.0 (0.02)
Passed bias filter:                       40  (0.00975134); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.75u 0.15s 00:00:00.90 Elapsed: 00:00:00.99
# Mc/sec: 1938.51
//
Query:       MMETSP1137-20121227|2930_1  [L=162]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.1e-18   65.1   0.0    1.5e-18   64.7   0.0    1.1  1  TIGR01934 MenG_MenH_UbiE: ubiquinone/menaquinone biosynthesis methyltransferase
    2.3e-13   48.3   0.0      3e-13   48.0   0.0    1.1  1  TIGR02072 BioC: biotin biosynthesis protein BioC
      6e-08   30.3   0.0    6.9e-08   30.1   0.0    1.1  1  TIGR02752 MenG_heptapren: 2-heptaprenyl-1,4-naphthoquinone methyltransferase
    4.6e-06   23.9   0.0    5.2e-06   23.7   0.0    1.1  1  TIGR01983 UbiG: 3-demethylubiquinone-9 3-O-methyltransferase
    1.1e-05   22.8   0.0    1.4e-05   22.5   0.0    1.2  1  TIGR03534 RF_mod_PrmC: protein-(glutamine-N5) methyltransferase, release factor-specific
    7.4e-05   20.0   0.0     0.0001   19.6   0.0    1.2  1  TIGR03533 L3_gln_methyl: protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific
    0.00017   18.9   0.0     0.0002   18.7   0.0    1.1  1  TIGR02021 BchM-ChlM: magnesium protoporphyrin O-methyltransferase
     0.0005   17.1   0.0    0.00059   16.8   0.0    1.1  1  TIGR00536 hemK_fam: methyltransferase, HemK family
     0.0012   16.4   0.0     0.0017   15.9   0.0    1.1  1  TIGR00740 TIGR00740: putative methyltransferase
  ------ inclusion threshold ------
      0.011   13.1   0.0      0.015   12.7   0.0    1.1  1  TIGR02081 metW: methionine biosynthesis protein MetW


Domain annotation for each model (and alignments):
>> TIGR01934  MenG_MenH_UbiE: ubiquinone/menaquinone biosynthesis methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.7   0.0   3.8e-21   1.5e-18      38     140 ..      54     156 ..      38     158 .. 0.91

  Alignments for each domain:
  == domain 1    score: 64.7 bits;  conditional E-value: 3.8e-21
   TIGR01934  38 ekeekvlDvatGtGdlaielakkae.akvtgvDlseemLevakkkakekeeanvefieadaeeLp.fednsfdavtiafGlRNvtdiekaLkelaRVlkpggrlv 140
                 + + ++lD+atG G+ +  la++ + a + ++D+se+mL+ a+ +++    +nve+   d ++++ f+d+sfd+vt  +G+   ++++ka++e++RVl+pgg+l+
  MMETSP1137-20121227|2930_1  54 SGSGRFLDLATGPGEPSKMLAEAFPrATIYASDVSEDMLDKARWRMQGL--SNVEYGIVDMQDMSqFPDASFDVVTACYGFMFPENRQKAVSEAFRVLRPGGTLI 156
                 466799****************9999*******************9755..47***********98************************************986 PP

>> TIGR02072  BioC: biotin biosynthesis protein BioC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.0   0.0   7.4e-16     3e-13      36     133 ..      57     158 ..      42     160 .. 0.90

  Alignments for each domain:
  == domain 1    score: 48.0 bits;  conditional E-value: 7.4e-16
   TIGR02072  36 akvLdiGcGtGiltrallkrfpqaelialDiseemleqakkkls...nvqficgdieklp.lekksfDlivSnlalQWlddlsevlaelarvlkpgGllafs 133
                  + Ld++ G+G  +++l++ fp a+++a D+se ml  a+ + +   nv++   d++ ++ + ++sfD+++++  +   ++ +++++e++rvl+pgG l+ +
  MMETSP1137-20121227|2930_1  57 GRFLDLATGPGEPSKMLAEAFPRATIYASDVSEDMLDKARWRMQglsNVEYGIVDMQDMSqFPDASFDVVTACYGFMFPENRQKAVSEAFRVLRPGGTLIAT 158
                 589*************************************99999999999888888775267999********************************9865 PP

>> TIGR02752  MenG_heptapren: 2-heptaprenyl-1,4-naphthoquinone methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.1   0.0   1.7e-10   6.9e-08      48     148 ..      58     156 ..      18     159 .. 0.83

  Alignments for each domain:
  == domain 1    score: 30.1 bits;  conditional E-value: 1.7e-10
   TIGR02752  48 kaldvccgtadwaialaeavgkegevkgldfsenmlsvgkekvkdaklenvelvhgnamelpyednsfdyvtigfglrnvpdylqvlkemarvvkpggkvv 148
                 + ld+  g ++ + +laea  ++  ++  d se+ml+ ++ +++  +  +  +v  + m   ++d sfd vt  +g+    +  + + e  rv++pgg ++
  MMETSP1137-20121227|2930_1  58 RFLDLATGPGEPSKMLAEAF-PRATIYASDVSEDMLDKARWRMQGLSNVEYGIVDMQDMS-QFPDASFDVVTACYGFMFPENRQKAVSEAFRVLRPGGTLI 156
                 679**************997.6789***********999988877666666677777776.6***************99889999*************987 PP

>> TIGR01983  UbiG: 3-demethylubiquinone-9 3-O-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.7   0.0   1.3e-08   5.2e-06      51     151 ..      57     157 ..      26     161 .. 0.87

  Alignments for each domain:
  == domain 1    score: 23.7 bits;  conditional E-value: 1.3e-08
   TIGR01983  51 lkvlDvGcGgGllseslarl..gaevtgiDlseelievAklhakkdplkkieyelksveelaeeekesfDvvlamEvlEHvadleeilkecaellkpggilfl 151
                  ++lD+ +G G  s+ la+    a++ + D+se++++ A+    +++l ++ey + +++++++  ++sfDvv+a       ++ ++ + e+ ++l+pgg+l+ 
  MMETSP1137-20121227|2930_1  57 GRFLDLATGPGEPSKMLAEAfpRATIYASDVSEDMLDKARWR--MQGLSNVEYGIVDMQDMSQFPDASFDVVTACYGFMFPENRQKAVSEAFRVLRPGGTLIA 157
                 578999999998888888763356799**********99976..567888*************************9999********************9874 PP

>> TIGR03534  RF_mod_PrmC: protein-(glutamine-N5) methyltransferase, release factor-specific
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.5   0.0   3.4e-08   1.4e-05      76     162 ..      44     128 ..      42     156 .. 0.91

  Alignments for each domain:
  == domain 1    score: 22.5 bits;  conditional E-value: 3.4e-08
   TIGR03534  76 LveaaleelkkkeklkvlDlgtGsGaIalalakelpdakviavDiseeAlkvarkNakrlglkeveflksdllealeekgkfdlivs 162
                 +v+ a ++l++ +  ++lDl tG G     la+ +p+a+++a+D+se+ l+ ar  ++ l   e  ++  + ++++ ++ +fd++++
  MMETSP1137-20121227|2930_1  44 MVDRARAALPSGS-GRFLDLATGPGEPSKMLAEAFPRATIYASDVSEDMLDKARWRMQGLSNVEYGIVDMQDMSQF-PDASFDVVTA 128
                 7888889998888.8***************************************9999988777888888888889.9999999975 PP

>> TIGR03533  L3_gln_methyl: protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.0   2.4e-07    0.0001     121     166 ..      55     100 ..      42     131 .. 0.81

  Alignments for each domain:
  == domain 1    score: 19.6 bits;  conditional E-value: 2.4e-07
   TIGR03533 121 evkrvldlctGsGClaiaaaeafpeaevdavDisedaLevaeenie 166
                    r ldl tG G  + ++aeafp+a++ a+D+sed L+ a+  ++
  MMETSP1137-20121227|2930_1  55 GSGRFLDLATGPGEPSKMLAEAFPRATIYASDVSEDMLDKARWRMQ 100
                 56789*********************************99987665 PP

>> TIGR02021  BchM-ChlM: magnesium protoporphyrin O-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.0   4.8e-07    0.0002      54     124 ..      54     128 ..      21     145 .. 0.78

  Alignments for each domain:
  == domain 1    score: 18.7 bits;  conditional E-value: 4.8e-07
   TIGR02021  54 kGk.kvlDAGCGtGllsielAkr..GaivkavDiseklvelarkraekedeaenveFevndlesle.gkfDavva 124
                 +G+ + lD   G G  s  lA+    a + a+D+se+++++ar r++   + e      +d+ +     fD+v a
  MMETSP1137-20121227|2930_1  54 SGSgRFLDLATGPGEPSKMLAEAfpRATIYASDVSEDMLDKARWRMQGLSNVEYGIVDMQDMSQFPdASFDVVTA 128
                 44338899999*********99733699********************995444444555555555567888766 PP

>> TIGR00536  hemK_fam: methyltransferase, HemK family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0   1.4e-06   0.00059     101     157 ..      44      98 ..      40     127 .. 0.85

  Alignments for each domain:
  == domain 1    score: 16.8 bits;  conditional E-value: 1.4e-06
   TIGR00536 101 lvekaleslisqeplkhilDlgtGsGcIalalAleipnaeviavDistdalavaeeN 157
                 +v++a ++l s     + lDl tG G  +  lA ++p a+++a+D+s+d l  a+  
  MMETSP1137-20121227|2930_1  44 MVDRARAALPSGS--GRFLDLATGPGEPSKMLAEAFPRATIYASDVSEDMLDKARWR 98 
                 5667777777777..59********************************99877655 PP

>> TIGR00740  TIGR00740: putative methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   4.1e-06    0.0017      81     158 ..      81     156 ..      72     159 .. 0.90

  Alignments for each domain:
  == domain 1    score: 15.9 bits;  conditional E-value: 4.1e-06
   TIGR00740  81 kligidnsqpmlerareklkaykaaipvevlcndirev.eikeasavvlnfvlqflepeereallkkiyeglnlnGvlv 158
                  + + d s+ ml++ar +++   +    e    d++++ ++ +as  v+     f+ pe+r+  ++  ++ l ++G l+
  MMETSP1137-20121227|2930_1  81 TIYASDVSEDMLDKARWRMQGLSNV---EYGIVDMQDMsQFPDASFDVVTACYGFMFPENRQKAVSEAFRVLRPGGTLI 156
                 677899**************99886...88888888874699***********************************98 PP

>> TIGR02081  metW: methionine biosynthesis protein MetW
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   3.6e-05     0.015      12     102 ..      53     149 ..      46     157 .. 0.77

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 3.6e-05
   TIGR02081  12 pags.rvLDlGcGdGeLLallrdek.qvegaGleideenvlac..varGveviqqdl.d.egLeafedksfDvvvlsqtlqavrnteeiLdellRvg 102
                 p gs r LDl +G Ge  ++l++   + + +  +++e+++ ++   ++G++ +++ + d +++++f+d sfDvv     +   +n ++ ++e +Rv 
  MMETSP1137-20121227|2930_1  53 PSGSgRFLDLATGPGEPSKMLAEAFpRATIYASDVSEDMLDKArwRMQGLSNVEYGIvDmQDMSQFPDASFDVVTACYGFMFPENRQKAVSEAFRVL 149
                 5555489********988888775314455666777777765522688**999998733379************99999999999999999998885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (162 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       100  (0.0243784); expected 82.0 (0.02)
Passed bias filter:                      100  (0.0243784); expected 82.0 (0.02)
Passed Vit filter:                        18  (0.0043881); expected 4.1 (0.001)
Passed Fwd filter:                        10  (0.00243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.22u 0.14s 00:00:00.36 Elapsed: 00:00:00.38
# Mc/sec: 562.69
//
Query:       MMETSP1137-20121227|2931_1  [L=353]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (353 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        71  (0.0173086); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.18s 00:00:00.44 Elapsed: 00:00:00.74
# Mc/sec: 629.62
//
Query:       MMETSP1137-20121227|2932_1  [L=331]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (331 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       106  (0.0258411); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.16s 00:00:00.42 Elapsed: 00:00:00.38
# Mc/sec: 1149.69
//
Query:       MMETSP1137-20121227|2933_1  [L=353]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (353 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       110  (0.0268162); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.15s 00:00:00.43 Elapsed: 00:00:00.55
# Mc/sec: 847.13
//
Query:       MMETSP1137-20121227|2934_1  [L=558]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.057    8.8  20.0      0.078    8.4  13.9    1.1  1  TIGR02169 SMC_prok_A: chromosome segregation protein SMC
        0.2    7.1  26.2       0.27    6.7  18.2    1.1  1  TIGR02168 SMC_prok_B: chromosome segregation protein SMC


Domain annotation for each model (and alignments):
>> TIGR02169  SMC_prok_A: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4  13.9   3.8e-05     0.078     776     920 ..       9     156 ..       3     179 .. 0.60

  Alignments for each domain:
  == domain 1    score: 8.4 bits;  conditional E-value: 3.8e-05
   TIGR02169 776 aklkealedleaelseekieeieeelekleeevsriearleeieaelnklelekelleeeiqelqeeieeleeqkkeiekeieelkak...leele...eeleeleaavreLeeelkdLkkereeleaelrelekkkeeleaeiekkrkrl 920
                 a+++ +l d+ +e++++ i+ i+ee+++     +++ ++++ + ++l+++  + e+l ++  + + e    +  ++ +e+++ ++  +   ++ele   +++ e+e + + L +e++  k + ee+ +  re+e+++  ++ e+e+ r++l
  MMETSP1137-20121227|2934_1   9 ADYRRQLRDMREEYRQDAIDSISEESRQALYASRKLTKQVARLHRDLESSVSRSEQLTNKLSNTKCEL---DISNETLEEQVRNSVLQrrrIAELEeraRQALEAEEEAAALAQEKERYKTQLEEALSRCREMERAQAAAKREAERWRRQL 156
                 46889999999999999999999999999999999999999999999988866666665555554443...33333334444433333000333330003333444445555555555555555555555555555555555555544443 PP

>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7  18.2   0.00013      0.27     760     902 ..      14     153 ..       2     170 .. 0.46

  Alignments for each domain:
  == domain 1    score: 6.7 bits;  conditional E-value: 0.00013
   TIGR02168 760 eleeereel.eeeleeaeeelkeaeeeieeleaeieqlkeelkalrealseleaeltelkeeaaekeerleslekeiaalekeleeleeqieeleeeiesleaeieeleeeleeleeeleellkekasleealaelreeleels 902
                 +l++ ree+ ++++++ +ee  +a   + +l++++++l ++l+++ ++ ++l ++l+++k e++  +e+le+  ++   +++++ elee+++++ e  e+++a  +e e+     +++lee+l + +++e+a a++++e e  +
  MMETSP1137-20121227|2934_1  14 QLRDMREEYrQDAIDSISEESRQALYASRKLTKQVARLHRDLESSVSRSEQLTNKLSNTKCELDISNETLEEQVRNSVLQRRRIAELEERARQALEAEEEAAALAQEKER----YKTQLEEALSRCREMERAQAAAKREAERWR 153
                 33333333303334445555555666666666666666666666666666666666666666666666666666666666666666665555544433332222222222....222222222222222222222222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (558 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       300  (0.0731351); expected 82.0 (0.02)
Passed bias filter:                      107  (0.0260848); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.17s 00:00:00.63 Elapsed: 00:00:01.07
# Mc/sec: 688.32
//
Query:       MMETSP1137-20121227|2935_1  [L=206]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.2e-05   22.5   0.0    1.4e-05   22.3   0.0    1.1  1  TIGR03516 ppisom_GldI: peptidyl-prolyl isomerase, gliding motility-associated
  ------ inclusion threshold ------
      0.014   12.1   0.0      0.018   11.7   0.0    1.1  1  TIGR00115 tig: trigger factor
      0.026   11.7   0.0      0.038   11.2   0.0    1.3  1  TIGR01481 ccpA: catabolite control protein A


Domain annotation for each model (and alignments):
>> TIGR03516  ppisom_GldI: peptidyl-prolyl isomerase, gliding motility-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.3   0.0   1.1e-08   1.4e-05      66     156 ..      77     167 ..      39     188 .. 0.85

  Alignments for each domain:
  == domain 1    score: 22.3 bits;  conditional E-value: 1.1e-08
   TIGR03516  66 tskkGfwyaykkkdttetktpetgDlvsfeyeikaldgdviyskeelgpktyk..vdqedlisGlrdglklmkegeevtfllPsykayGyyGd 156
                 t+++G  y+    +++++  p  gDl+   ++ k     +++ +   +p+ y+  v   +++ G+ +++klm++g++  + +P   a+G  G 
  MMETSP1137-20121227|2935_1  77 TTSSGLKYSVV--KSGNGGQPAVGDLIAIRFKGKVAATGAVFDDILESPEPYYtrVGSGNVLAGVEEAVKLMHSGDTWDLTIPGDLAFGSKGR 167
                 66777766654..57788899******99999999888888888777777665226779******************************9886 PP

>> TIGR00115  tig: trigger factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   1.3e-05     0.018     148     206 ..      94     156 ..      80     164 .. 0.86

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 1.3e-05
   TIGR00115 148 aaekgDivtidfegkv..dGeafegg..kaedfelelgsgqfipgfeeqlvGmkaGeekeikv 206
                 + + gD + i f+gkv   G  f+    + e + + +gsg++++g+ee++  m  G++ ++++
  MMETSP1137-20121227|2935_1  94 QPAVGDLIAIRFKGKVaaTGAVFDDIleSPEPYYTRVGSGNVLAGVEEAVKLMHSGDTWDLTI 156
                 6788**********98889*****96225699*************************988765 PP

>> TIGR01481  ccpA: catabolite control protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   2.8e-05     0.038     244     291 ..       3      51 ..       1      79 [. 0.89

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 2.8e-05
   TIGR01481 244 addelaiGilnaaldaGikvPe.dlevitsndtkltelvrPqlstivqP 291
                 ad  la+G+l  a+ aG+ vP   +  i+++++ +t+ + P++s+  +P
  MMETSP1137-20121227|2935_1   3 ADLRLAVGMLXLAAAAGLTVPAtHMGAISFQNALVTRASAPAMSASWKP 51 
                 56689****************63799*****************997777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (206 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       106  (0.0258411); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.19u 0.16s 00:00:00.35 Elapsed: 00:00:00.41
# Mc/sec: 663.16
//
Query:       MMETSP1137-20121227|2936_1  [L=422]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (422 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       223  (0.0543637); expected 82.0 (0.02)
Passed bias filter:                      144  (0.0351048); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.20s 00:00:00.55 Elapsed: 00:00:00.52
# Mc/sec: 1071.14
//
Query:       MMETSP1137-20121227|2937_1  [L=359]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (359 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       103  (0.0251097); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.16s 00:00:00.43 Elapsed: 00:00:00.41
# Mc/sec: 1155.71
//
Query:       MMETSP1137-20121227|2938_1  [L=327]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.9e-13   47.8   0.0    3.8e-13   47.4   0.0    1.1  1  TIGR02349 DnaJ_bact: chaperone protein DnaJ
    7.5e-07   25.7   0.2    9.9e-07   25.3   0.2    1.0  1  TIGR03835 termin_org_DnaJ: terminal organelle assembly protein TopJ


Domain annotation for each model (and alignments):
>> TIGR02349  DnaJ_bact: chaperone protein DnaJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.4   0.0   1.9e-16   3.8e-13       1      74 [.      41     116 ..      41     127 .. 0.91

  Alignments for each domain:
  == domain 1    score: 47.4 bits;  conditional E-value: 1.9e-16
   TIGR02349   1 dYYeiLgvskdAseeeikkAYrklakkyHPDrnkg..ekeaeekfkeineAyevLsdeekraqYDqfghaglegga 74 
                 +YY++++v  +As +eikk Y++ + + HPD+ ++   ke +e f   + Ay+vL d++ r+ Y++fg  g+e+++
  MMETSP1137-20121227|2938_1  41 SYYDMMDVLPSASLQEIKKGYKTASLRVHPDKLAAagLKEGDEAFLALKAAYDVLYDSHLRDLYNKFGPPGIENKN 116
                 5******************************977544899****************************99998864 PP

>> TIGR03835  termin_org_DnaJ: terminal organelle assembly protein TopJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.3   0.2   4.8e-10   9.9e-07       3      76 ..      41     117 ..      39     120 .. 0.92

  Alignments for each domain:
  == domain 1    score: 25.3 bits;  conditional E-value: 4.8e-10
   TIGR03835   3 DyyevLgidrDadeqeikkafrkLakkyhPDrnka...adaakifaeineandvLsnPkkraryDkyGhDGvDredd 76 
                  yy+++++ + a  qeikk ++  + + hPD+  a    + ++ f  +  a+dvL + + r+ y+k+G  G+++ +d
  MMETSP1137-20121227|2938_1  41 SYYDMMDVLPSASLQEIKKGYKTASLRVHPDKLAAaglKEGDEAFLALKAAYDVLYDSHLRDLYNKFGPPGIENKND 117
                 6*******************************98844447899*****************************99987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (327 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       124  (0.0302292); expected 82.0 (0.02)
Passed bias filter:                      104  (0.0253535); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.27u 0.17s 00:00:00.44 Elapsed: 00:00:00.38
# Mc/sec: 1135.80
//
Query:       MMETSP1137-20121227|2939_1  [L=478]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (478 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       130  (0.0316919); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.16s 00:00:00.50 Elapsed: 00:00:00.40
# Mc/sec: 1577.27
//
Query:       MMETSP1137-20121227|2940_1  [L=354]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (354 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        44  (0.0107265); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.14s 00:00:00.38 Elapsed: 00:00:00.39
# Mc/sec: 1198.05
//
Query:       MMETSP1137-20121227|2942_1  [L=45]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (45 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        10  (0.00243784); expected 82.0 (0.02)
Passed bias filter:                       10  (0.00243784); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.18s 00:00:00.28 Elapsed: 00:00:00.34
# Mc/sec: 174.69
//
Query:       MMETSP1137-20121227|2943_1  [L=718]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.6e-46  156.9   6.9    1.6e-28   97.4   1.5    2.3  2  TIGR00561 pntA: NAD(P)(+) transhydrogenase (AB-specific), alpha subunit
  ------ inclusion threshold ------
      0.043   11.4   0.0       0.11   10.1   0.0    1.6  2  TIGR04038 tatD_link_rSAM: radical SAM protein, TatD family-associated


Domain annotation for each model (and alignments):
>> TIGR00561  pntA: NAD(P)(+) transhydrogenase (AB-specific), alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.4   0.1   3.2e-21   6.6e-18     264     349 ..       1      89 [.       1      94 [. 0.85
   2 !   97.4   1.5     8e-32   1.6e-28     394     510 ..     109     223 ..      81     224 .. 0.79

  Alignments for each domain:
  == domain 1    score: 62.4 bits;  conditional E-value: 3.2e-21
   TIGR00561 264 klitkemvdsmkagsvivdlaaeqggnceytkagevvttenqvkvigytdlpsrlatqssqlygtnlvnllkl...lckekdgnikvdv 349
                 kl+ + mv+++k+gsv vdlaa+ ggn   t+  + + t n+v+ igytdl srla  ss ly  n ++ +      + +k g++ +d 
  MMETSP1137-20121227|2943_1   1 KLVDETMVKALKPGSVTVDLAASAGGNVATTVKDKAIVTPNGVTCIGYTDLNSRLAQTSSTLYANNQMKWILSagpTTTKKKGEFALDA 89 
                 7999**************************************************************88765441113345557777765 PP

  == domain 2    score: 97.4 bits;  conditional E-value: 8e-32
   TIGR00561 394 sakspsvkyallalaaillvwlasvapk.eflshftvfvlacvvgyyvvwnvshalhtplmsvtnaisgiiivgallqisqpln..lfvsilafiailvasinifggflvtqrmlkmfrk 510
                 +++s ++ y      a++l+++++v+p+ +f s f+ f+l+ v+gy+vvw v +alh+plm+vtnaisg+  +g++  ++++    +  ++l++ a  +++ini ggf vt++ml +f++
  MMETSP1137-20121227|2943_1 109 MTSSRRATY-----GALALLGVGVVSPNaAFSSMFSTFALSGVIGYQVVWGVVPALHSPLMAVTNAISGMTAIGGMYTMGGGIFptSTAEVLGLTATTISAINISGGFIVTKKMLDLFKR 223
                 223333333.....4556788899999527999***********************************************9985558899****************************86 PP

>> TIGR04038  tatD_link_rSAM: radical SAM protein, TatD family-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0      0.69   1.4e+03     146     168 ..     361     383 ..     354     385 .. 0.79
   2 ?   10.1   0.0   5.2e-05      0.11      37      93 ..     538     596 ..     532     608 .. 0.84

  Alignments for each domain:
  == domain 1    score: -3.3 bits;  conditional E-value: 0.69
   TIGR04038 146 vleFikeakklikevivsavele 168
                  le +++a++++  v +s v l+
  MMETSP1137-20121227|2943_1 361 FLEHVRHAPEMLDAVRMSSVGLA 383
                 56788999999999999999765 PP

  == domain 2    score: 10.1 bits;  conditional E-value: 5.2e-05
   TIGR04038  37 elklekepsveeviaaikdlkkyeEvvF.cGyGepllrle.vvkevakaikekgakvRv 93 
                  ++ e e ++ +v + ++ lk+ +Ev+   GyG ++ + + +v ++ak +k++g++vR 
  MMETSP1137-20121227|2943_1 538 AMVFEGEAKMTDVDTVVDRLKDAKEVIIvPGYGLAVANGQyAVADIAKSLKASGVNVRF 596
                 567778889999999999999999987526******99763799*************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (718 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       149  (0.0363237); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.13s 00:00:00.64 Elapsed: 00:00:00.52
# Mc/sec: 1822.46
//
Query:       MMETSP1137-20121227|2944_1  [L=126]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (126 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       101  (0.0246221); expected 82.0 (0.02)
Passed bias filter:                      100  (0.0243784); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.17s 00:00:00.33 Elapsed: 00:00:00.30
# Mc/sec: 554.35
//
Query:       MMETSP1137-20121227|2945_1  [L=456]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (456 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        82  (0.0199902); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.17s 00:00:00.50 Elapsed: 00:00:00.39
# Mc/sec: 1543.26
//
Query:       MMETSP1137-20121227|2946_1  [L=92]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (92 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        50  (0.0121892); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.13s 00:00:00.26 Elapsed: 00:00:00.27
# Mc/sec: 449.74
//
Query:       MMETSP1137-20121227|2947_1  [L=403]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.8e-05   20.5   6.5    1.9e-05   20.4   4.5    1.0  1  TIGR02168 SMC_prok_B: chromosome segregation protein SMC
      0.009   13.2   0.0      0.014   12.5   0.0    1.2  1  TIGR03242 arg_catab_astE: succinylglutamate desuccinylase
  ------ inclusion threshold ------
      0.016   10.7   8.8      0.021   10.3   6.1    1.1  1  TIGR02169 SMC_prok_A: chromosome segregation protein SMC


Domain annotation for each model (and alignments):
>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   4.5   1.4e-08   1.9e-05     329     580 ..      99     346 ..      71     403 .] 0.58

  Alignments for each domain:
  == domain 1    score: 20.4 bits;  conditional E-value: 1.4e-08
   TIGR02168 329 eskkeeleeelaeleeeleelkeelesleaeleeaeaeleelesrleeleeeleelrsevaeleeqlaslnaelerleaeleqleerrerlkqeieelekkleeaeaelkelqeeleeleeeleeleeelerleealeeleeeleeaeqalqkaeeelaqlqarlesleslqenleglsegvkallknksklagilgvlselieveekyeaAieaalgerlqavvveneeaakkaiealkknelGrvtflpl 580
                  + +e+ ++   e+ +el+ +++ l++++a+ +++ + l  ++  ++++e++  +lr +va++  q++     +  l+ael+++e+ +++     e++++  + + ++l + +++ ++l +e+++++e+l++ e++ ++++++++ea  + + a +  ++ + rl ++ + +e+  gl    +a+++ +++     + l  + e+++ y   ++a   +   +v+   ++   +a+++l+++++  +++ p+
  MMETSP1137-20121227|2947_1  99 LQAEERCRATELEQHAELQVAAQALAAEQARSAAFSERLLLARHDKSAAEDDNAKLRCRVAQMAGQVDGFIVCIALLQAELQAAERAVKERAVAYEDQQTVYTGVCSALIDADARYATLAAEKKSVQEALKASERTCSSMNKRVAEADLRARRALQAQRETETRLGIVMHEKERIAGLR-PPAAAAQPQDR---TWPFLLRQAEFDPHYLPFLAAFSCACDLSVLAPLSAYQXSAMSSLAQASTPALALSPA 346
                 34444444444444446666666666666666666666666666666777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777764.33344444444...4577777777777775444444333333444444444446666666666444555555 PP

>> TIGR03242  arg_catab_astE: succinylglutamate desuccinylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.5   0.0     1e-05     0.014      89     129 ..      75     116 ..      69     132 .. 0.79

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 1e-05
   TIGR03242  89 lrkgkRyle.edlnRlfgGryqeleeskeklRaeeLeqvvea 129
                 l kgkR  e + +    gGr+++l +++e++Ra+eLeq++e 
  MMETSP1137-20121227|2947_1  75 LVKGKRMSEhSAVSVQLGGRWASLLQAEERCRATELEQHAEL 116
                 66778876514567779*********************9976 PP

>> TIGR02169  SMC_prok_A: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   6.1   1.5e-05     0.021     246     405 ..     108     273 ..      77     278 .. 0.74

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 1.5e-05
   TIGR02169 246 elaeleeelekleeeieelekeleeiekkleelnkkieklgeeeqlavkekleelkaeiekleraiaekeeeledaeerlakaeaeidklkeeie.......elereieeekkereklkeelkelkeeleelraeleevdkeaaelreelkelkekleklkeelnel 405
                    e+++el+   + + + ++++++  ++l  l+++ ++ +e++ ++++ +++++ +++      ia  + el+ ae+ +++  + ++ ++   +       + + + ++ ++e+++++e+lk+++ + + + ++++e d +a+++ +++ e +++l  + +e++ +
  MMETSP1137-20121227|2947_1 108 TELEQHAELQVAAQALAAEQARSAAFSERLL-LARHDKSAAEDDNAKLRCRVAQMAGQVDGFIVCIALLQAELQAAERAVKERAVAYEDQQTVYTgvcsaliDADARYATLAAEKKSVQEALKASERTCSSMNKRVAEADLRARRALQAQRETETRLGIVMHEKERI 273
                 3333444444444444444555555555443.455556778999999*********9999999999999999999999999988888888766551111111456777888999******************************************99999998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (403 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       186  (0.0453437); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.37u 0.17s 00:00:00.54 Elapsed: 00:00:00.44
# Mc/sec: 1208.90
//
Query:       MMETSP1137-20121227|2948_1  [L=444]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (444 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       117  (0.0285227); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.16s 00:00:00.46 Elapsed: 00:00:00.51
# Mc/sec: 1149.08
//
Query:       MMETSP1137-20121227|2949_1  [L=328]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      1e-40  137.6   0.1    1.4e-40  137.2   0.0    1.1  1  TIGR02748 GerC3_HepT: heptaprenyl diphosphate synthase component II
    6.6e-38  128.3   0.1    2.3e-37  126.5   0.1    1.7  2  TIGR02749 prenyl_cyano: solanesyl diphosphate synthase


Domain annotation for each model (and alignments):
>> TIGR02748  GerC3_HepT: heptaprenyl diphosphate synthase component II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  137.2   0.0   6.7e-44   1.4e-40      11     252 ..      42     298 ..      35     312 .. 0.83

  Alignments for each domain:
  == domain 1    score: 137.2 bits;  conditional E-value: 6.7e-44
   TIGR02748  11 edieviekelekavqa...eaevlkeaalellkaGGkrirPvfvllagklgdydldklkkvavalelihmaslvhddv..iddaelrrGketikskwdnriamytGdyllaksletite....ied...prvhkilskti..vevclGeieqikdkynfdqnlrtylrrikrktalliaascqlGaivagadeeivkklyyfgyyvGmsyqiiddildfvgteeelGkPaGedllqGnvtlPvlyaledea.lkkkl 252
                 e  +  ek+l++++++   e++++ e+    l aGGkr+rP++   a++l    l++    avale+ih  sl+hdd+  +d+ ++rrGk+t +  +++ +a+ +Gd +l+ ++e++++    +     +rv ++l +t+  + ++ G++  ++++ + d +  t +     kta l+ a+   Gai aga++e+  +  +++  +G+++q+ ddild +g+ eelGk aG+d      t P l  l+ ++ + ++l
  MMETSP1137-20121227|2949_1  42 EKRQLAEKALDESLTStvkETDTIIESMRYSLLAGGKRVRPMLCFAATELFGGSLEAATPTAVALEMIHTMSLIHDDLpaMDNDDFRRGKPTNHKLYGDDVAILAGDAMLSTAFEHVARetkgVPAeriVRVIRVLGETVgpLGLAGGQVMDLQNEGKSDVDYDTLVWIHTHKTAALLKAAVSCGAILAGASDEDIANCERYALKIGLAFQVADDILDVTGSTEELGKTAGKDEATSKTTYPKLLGLDRSReVAQEL 298
                 555556666666666411134555566666677********************************************6559*********************************9987522223321125677788999833456789*******99999999999999999***999999999*************************************************************998766455554 PP

>> TIGR02749  prenyl_cyano: solanesyl diphosphate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  126.5   0.1   1.1e-40   2.3e-37      16     255 ..      50     296 ..      40     313 .. 0.85
   2 !    4.2   0.0     0.002         4     279     320 ..     287     326 ..     285     328 .] 0.88

  Alignments for each domain:
  == domain 1    score: 126.5 bits;  conditional E-value: 1.1e-40
   TIGR02749  16 altknlkslvGakhPilsaaaehlfeagGkrlrPaivllvsrataeeeeltarhrrlaeitelihtaslvhddv..vdesdvrrgvetvhslfdtrvavlaGdflfaqaswylanlen.......levvkllskvik..dfaeGeikqglnrfdsdlsledyleksyyktaslvaasskaaavlsevdsevaedlyeyGkhlGlafqvvddildftgsteklGkPaasdlkkGnltaPvlfaleeepklse 255
                 al++ l s v   + i+++    l  agGkr+rP + +    at       +     a   e+iht sl+hdd+  +d+ d rrg++t h+l++  va+laGd +++ a  ++a+  +       + v+++l++ +    +a G++    n+ +sd++ ++ +    +kta+l+ a+  + a+l+ +  e + +  +y  ++Glafqv ddild+tgste+lGk a+ d +  + t P l  l+++ ++ +
  MMETSP1137-20121227|2949_1  50 ALDESLTSTVKETDTIIESMRYSL-LAGGKRVRPMLCFA---ATELFGGSLEAATPTAVALEMIHTMSLIHDDLpaMDNDDFRRGKPTNHKLYGDDVAILAGDAMLSTAFEHVARETKgvpaeriVRVIRVLGETVGplGLAGGQVMDLQNEGKSDVDYDTLVWIHTHKTAALLKAAVSCGAILAGASDEDIANCERYALKIGLAFQVADDILDVTGSTEELGKTAGKDEATSKTTYPKLLGLDRSREVAQ 296
                 566777777877788887776665.59*******88775...5555555555566678899************7669*************************************86432222233678899999886225799*****************************************99999999999************************************************99887653 PP

  == domain 2    score: 4.2 bits;  conditional E-value: 0.002
   TIGR02749 279 aikkarelakekaqlalkslevlpksaskealkelvefvler 320
                 +++++re+a+e +++a+ +le   ++a+   l+ l++++++r
  MMETSP1137-20121227|2949_1 287 GLDRSREVAQELVDEAKAALEQYGDAAA--PLNGLADYIISR 326
                 789******************9887765..799999999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (328 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       146  (0.0355924); expected 82.0 (0.02)
Passed bias filter:                      119  (0.0290102); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.29u 0.14s 00:00:00.43 Elapsed: 00:00:00.44
# Mc/sec: 983.92
//
Query:       MMETSP1137-20121227|2950_1  [L=243]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (243 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       167  (0.0407118); expected 82.0 (0.02)
Passed bias filter:                      127  (0.0309605); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.15s 00:00:00.39 Elapsed: 00:00:00.45
# Mc/sec: 712.74
//
Query:       MMETSP1137-20121227|2951_1  [L=319]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.4e-09   32.0   0.0    7.9e-09   31.7   0.0    1.1  1  TIGR03903 TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
    8.7e-06   23.2   0.0    1.3e-05   22.5   0.0    1.2  1  TIGR03724 arch_bud32: Kae1-associated kinase Bud32


Domain annotation for each model (and alignments):
>> TIGR03903  TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.7   0.0   3.8e-12   7.9e-09      66     137 ..       5      75 ..       1      96 [. 0.85

  Alignments for each domain:
  == domain 1    score: 31.7 bits;  conditional E-value: 3.8e-12
   TIGR03903  66 lrevLaadGaLpaaetgrLmlqvLDalaaahdaGvvhRDLkPqnimvsaadveshakvLDFGigaLlpgved 137
                 l +++ + G  +  +   ++ q L+ la  h++ ++hRD+kP+ni+++ ad      v DFG+  +l +  +
  MMETSP1137-20121227|2951_1   5 LFDRIVSRGHFSEPQAIYVIRQLLEVLAFMHERKIIHRDIKPENILLASADGW-DILVSDFGLVKILENLAA 75 
                 56677788888999999999****************************99876.57899***9998877655 PP

>> TIGR03724  arch_bud32: Kae1-associated kinase Bud32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.5   0.0   6.6e-09   1.3e-05      94     146 ..      22      77 ..       7     104 .. 0.78

  Alignments for each domain:
  == domain 1    score: 22.5 bits;  conditional E-value: 6.6e-09
   TIGR03724  94 ellkevGelvgklHkagivhgDlttsNiivk...ddklyliDfGLgkkskevedka 146
                  +++++ e+++ +H+ +i+h D+ ++Ni++    + ++++ DfGL k+ +++  ++
  MMETSP1137-20121227|2951_1  22 YVIRQLLEVLAFMHERKIIHRDIKPENILLAsadGWDILVSDFGLVKILENLAATG 77 
                 678888999*********************63334567888****99877766665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (319 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        85  (0.0207216); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.28u 0.09s 00:00:00.37 Elapsed: 00:00:00.47
# Mc/sec: 895.84
//
Query:       MMETSP1137-20121227|2952_1  [L=247]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00092   17.2   0.0     0.0013   16.7   0.0    1.3  1  TIGR00229 sensory_box: PAS domain S-box protein
  ------ inclusion threshold ------
      0.023   11.0   0.0      0.024   11.0   0.0    1.1  1  TIGR02938 nifL_nitrog: nitrogen fixation negative regulator NifL


Domain annotation for each model (and alignments):
>> TIGR00229  sensory_box: PAS domain S-box protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0   6.6e-07    0.0013      26     110 ..      51     141 ..      32     146 .. 0.73

  Alignments for each domain:
  == domain 1    score: 16.7 bits;  conditional E-value: 6.6e-07
   TIGR00229  26 nilyvNrafeeifGYsaeeliGrnvle.lipeedreevrerierrle.gerepvseerrv...krkdGseiwvevsvspird.aggelgvv 110
                  i  vN a+  + GY a e++G+++ +    + + ++ +e  +   +   + p s+ + v   ++k+G  +  ++++  ++d  +g+++++
  MMETSP1137-20121227|2952_1  51 AICAVNSAWTHLCGYDACEVLGKSPKIlQGQKTNYDKAAEFTRSLSTqLAEGPSSSATVVlvnYTKSGAPFAHRLRTEAVTDkLSGKKYFI 141
                 6899*********************994444455555555544444432233333344336788999999999999999999888888886 PP

>> TIGR02938  nifL_nitrog: nitrogen fixation negative regulator NifL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   1.2e-05     0.024      25     101 ..      51     133 ..      25     170 .. 0.70

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 1.2e-05
   TIGR02938  25 nilyanaafseitGyakeeviGknesvlsnrttPpevyqalwgslaek...kP...waGkllnrrkdgelylaeltvaPvlne 101
                  i  +n+a++++ Gy   ev+Gk   +l  ++t  +   ++ +sl+ +    P    + +l+n  k g  +   l    v ++
  MMETSP1137-20121227|2952_1  51 AICAVNSAWTHLCGYDACEVLGKSPKILQGQKTNYDKAAEFTRSLSTQlaeGPsssATVVLVNYTKSGAPFAHRLRTEAVTDK 133
                 57789************************999976655555555544311112010223566666666666555555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (247 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        89  (0.0216967); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.23u 0.17s 00:00:00.40 Elapsed: 00:00:00.64
# Mc/sec: 509.40
//
Query:       MMETSP1137-20121227|2953_1  [L=193]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (193 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        79  (0.0192589); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.12s 00:00:00.32 Elapsed: 00:00:00.34
# Mc/sec: 749.23
//
Query:       MMETSP1137-20121227|2954_1  [L=401]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.4e-12   43.8   0.2    8.2e-11   40.4   0.0    2.5  3  TIGR01444 fkbM_fam: methyltransferase, FkbM family


Domain annotation for each model (and alignments):
>> TIGR01444  fkbM_fam: methyltransferase, FkbM family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0      0.19   7.6e+02       1      11 [.      83      93 ..      83      96 .. 0.87
   2 !   40.4   0.0     2e-14   8.2e-11      21     141 ..     154     269 ..     147     273 .. 0.77
   3 ?   -0.6   0.0     0.085   3.5e+02      47      69 ..     340     362 ..     334     378 .. 0.81

  Alignments for each domain:
  == domain 1    score: -1.7 bits;  conditional E-value: 0.19
   TIGR01444  1 vviDiGAniGd 11
                +++ iGAn+G 
  MMETSP1137-20121227|2954_1 83 TYVNIGANKGF 93
                6899*****95 PP

  == domain 2    score: 40.4 bits;  conditional E-value: 2e-14
   TIGR01444  21 aegrviafEPlpdllekleenvklnnlknvkllnaAvgdregeleftvsddatgnsslaadselaeeseieVevvtlddlveeaglekvdllKiDvEGaEleVLrglaetleekvpaivle 141
                 ++ +v+a+E   ++++ l++ +++ n++ + +++aA+++ eg  +f+ ++ ++g     ++s+l+++    V+++t+d+l++ + +  +dll iD+EG ++ VL+g+ + l+  +++ +le
  MMETSP1137-20121227|2954_1 154 RQIQVVAVELVTENVRLLQSLFTKLNVPGM-IVHAAASNVEGS-TFEPTEVRPGIEXRGMHSALSTT--AHVDIITVDRLAATHAIGIIDLLSIDTEGSDALVLAGATQLLQ-SRRVRMLE 269
                 4589***********************955.567777877764.36666666776666666643333..46***********************************755544.44444444 PP

  == domain 3    score: -0.6 bits;  conditional E-value: 0.085
   TIGR01444  47 lknvkllnaAvgdregeleftvs 69 
                 l  v+ll  A+g r+ge++ft +
  MMETSP1137-20121227|2954_1 340 LAXVRLLDEAAGGRSGETRFTAP 362
                 5459999************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (401 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       140  (0.0341297); expected 82.0 (0.02)
Passed bias filter:                      115  (0.0280351); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.31u 0.15s 00:00:00.46 Elapsed: 00:00:00.49
# Mc/sec: 1080.16
//
Query:       MMETSP1137-20121227|2955_1  [L=450]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (450 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        89  (0.0216967); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.14s 00:00:00.46 Elapsed: 00:00:00.35
# Mc/sec: 1697.00
//
Query:       MMETSP1137-20121227|2956_1  [L=1155]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.5e-05   21.2   0.0      0.012   12.4   0.0    3.7  3  TIGR02800 propeller_TolB: Tol-Pal system beta propeller repeat protein TolB


Domain annotation for each model (and alignments):
>> TIGR02800  propeller_TolB: Tol-Pal system beta propeller repeat protein TolB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0     0.083   3.4e+02     178     256 ..     692     767 ..     654     769 .. 0.70
   2 !    3.2   0.0    0.0018       7.6     194     340 ..     875    1015 ..     863    1022 .. 0.70
   3 !   12.4   0.0   2.9e-06     0.012     197     296 ..    1046    1141 ..    1027    1149 .. 0.49

  Alignments for each domain:
  == domain 1    score: -2.3 bits;  conditional E-value: 0.083
   TIGR02800 178 ydganqqtilrsrepllsPawSpdgqklaYvsfekkkpeiyvqdlatgkrekvas.fkginvaPafsPDGkklavslskd 256
                 +dga  +t++   + ++s   + dg  +a  s++    +  v+ +a g re+v + ++g + + +  P  ++l+++ s+d
  MMETSP1137-20121227|2956_1 692 ADGAPLHTLIGHASMVMSACIGADGVYVATASYD---KTAAVWRVADGGRERVLKgHSGAVLSVCMTPX-NELVITASSD 767
                 6788888888888888887777777555555554...44556777777666665426777777777777.7777776665 PP

  == domain 2    score: 3.2 bits;  conditional E-value: 0.0018
   TIGR02800  194 lsPawSpdgqklaYvsfekkkpeiyvqdlatgkrekvas.fkginvaPafsPDGkklavslskdGnpdiYvmdlaskqltrltkspgidtePsfspDgksivFtSdrgGspQiYkmdadggevrrltfegsynvspsispdgkliafv 340 
                  ls  +Sp+g++++  s   +  +  v+ l+ g+ e v s +   +   ++sPDG+  +++ s d    i+++  +++ +++l  ++g   + + +pDg  +v  Sd      ++ m   g++ r l+ + ++  s+++spdg +++ +
  MMETSP1137-20121227|2956_1  875 LSVCVSPEGTRVVTAS---SDKTARVWRLEDGALELVLSgHADDVTCACVSPDGN-FVLTASVDALCAIWLLK-DGSFQRKLQGHTGALRSVALTPDGVHVVTASDDKT-VRVWLMA-CGTQLRVLEGHTDRVSSAVVSPDGLHVVTA 1015
                  5556677777765333...333446788888888877662455666778999986.56777888888888886.56677888888888888888888888888888764.4677774.477888888888888888888888777655 PP

  == domain 3    score: 12.4 bits;  conditional E-value: 2.9e-06
   TIGR02800  197 awSpdgqklaYvsfekkkpeiyvqdlatgkrekv.asfkginvaPafsPDGkklavslskdGnpdiYvmdlaskqltrltkspgidtePsfspDgksivFt 296 
                  ++Spdg  ++  sf+k+     v+ l  g+ ++v +++   + + ++sPDG  l+vs s d ++ ++ + ++ +q++ + +++    ++ fspDg  +v  
  MMETSP1137-20121227|2956_1 1046 NVSPDGLYIVTASFDKTA---CVWRLSDGSLQRVfREHTDAVYSACVSPDG-LLVVSTSADKTARVWDL-ADASQRRVIKNHADLLWSACFSPDGMHVVTA 1141
                  555666555555555443...345555554433314455555566666664.35555555555555433.2333344444445555566666666555422 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1155 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        90  (0.0219405); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.69u 0.15s 00:00:00.84 Elapsed: 00:00:00.64
# Mc/sec: 2381.99
//
Query:       MMETSP1137-20121227|2957_1  [L=881]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (881 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        65  (0.0158459); expected 82.0 (0.02)
Passed bias filter:                       42  (0.0102389); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.52u 0.14s 00:00:00.66 Elapsed: 00:00:00.40
# Mc/sec: 2907.06
//
Query:       MMETSP1137-20121227|2958_1  [L=152]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.9e-05   20.8   0.1    3.7e-05   20.5   0.1    1.1  1  TIGR02160 PA_CoA_Oxy5: phenylacetate-CoA oxygenase/reductase, PaaK subunit
  ------ inclusion threshold ------
      0.011   13.4   0.0      0.019   12.6   0.0    1.4  1  TIGR02008 fdx_plant: ferredoxin [2Fe-2S]


Domain annotation for each model (and alignments):
>> TIGR02160  PA_CoA_Oxy5: phenylacetate-CoA oxygenase/reductase, PaaK subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   0.1   1.8e-08   3.7e-05     253     312 ..      64     123 ..      42     130 .. 0.73

  Alignments for each domain:
  == domain 1    score: 20.5 bits;  conditional E-value: 1.8e-08
   TIGR02160 253 revedpegdq..akvtvtldGlsreislsaedesvldaalraradlPfackgGvcgtcrakv 312
                 r+ + +  ++   +vt+ + G   +++l  + e +  + +ra++ + f ck G c+tc++++
  MMETSP1137-20121227|2958_1  64 RQAQAASQPKgtVEVTFPQKGD--KMVLAKQGEPIGXVIKRAGMRVKFDCKNGRCATCQVRL 123
                 3333333333004566666665..59999999**************************9985 PP

>> TIGR02008  fdx_plant: ferredoxin [2Fe-2S]
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0     9e-06     0.019       7      53 ..      78     124 ..      73     134 .. 0.80

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 9e-06
   TIGR02008   7 lvnedgseetievpddeyildaaeeeGidlpyscraGacstcaGkvk 53 
                 ++ ++++++ + +++ e i  + + +G+ + + c+ G c+tc  +++
  MMETSP1137-20121227|2958_1  78 VTFPQKGDKMVLAKQGEPIGXVIKRAGMRVKFDCKNGRCATCQVRLN 124
                 5556666777777778888888999*****************97765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (152 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       145  (0.0353486); expected 82.0 (0.02)
Passed bias filter:                      112  (0.0273038); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.17u 0.12s 00:00:00.29 Elapsed: 00:00:00.35
# Mc/sec: 573.21
//
Query:       MMETSP1137-20121227|2959_1  [L=217]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.5e-17   60.1   0.0      6e-17   59.7   0.0    1.1  1  TIGR03840 TMPT_Se_Te: thiopurine S-methyltransferase, Se/Te detoxification family
    5.7e-07   27.0   0.0    7.8e-07   26.5   0.0    1.1  1  TIGR02021 BchM-ChlM: magnesium protoporphyrin O-methyltransferase
     0.0021   15.4   0.1     0.0035   14.7   0.0    1.3  1  TIGR03534 RF_mod_PrmC: protein-(glutamine-N5) methyltransferase, release factor-specific
     0.0026   14.9   0.0     0.0031   14.7   0.0    1.1  1  TIGR00477 tehB: tellurite resistance protein TehB
  ------ inclusion threshold ------
      0.019   12.2   0.0      0.022   12.0   0.0    1.1  1  TIGR00406 prmA: ribosomal protein L11 methyltransferase


Domain annotation for each model (and alignments):
>> TIGR03840  TMPT_Se_Te: thiopurine S-methyltransferase, Se/Te detoxification family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.7   0.0   7.3e-20     6e-17       3     188 ..      10     190 ..       8     207 .. 0.81

  Alignments for each domain:
  == domain 1    score: 59.7 bits;  conditional E-value: 7.3e-20
   TIGR03840   3 WherWeee...qigFhqeevnpllvkyl...selelaeksrvlvPLcGkslDllwLaeqgh.evvgveLselAveqffaenelepeveeegelkryeaeeieilvgdifeltaeelgkvdavYDRAaLiAlPeemrerYakhlaellsegarqlLitldYdqeelegPPFsvseeevealyaee.yeiellese 188
                 W++ W+++     +F   +++ +l  yl   ++l+la+++  lvP cG++ D l La++g+ +vv+++Ls++Av++  +e ++ +++e+        a ++e+++gd+f+      g++d ++D   L Al +++r+++ak+ ++ll++g   lL ++    ++  gPPF++s   v+ l+++e +e+ +l+++
  MMETSP1137-20121227|2959_1  10 WESMWSKGlgkGEAFXVGSASGTLXGYLsrtPKLDLAQGAAALVPGCGRAYDALALASHGYsRVVALDLSSTAVNAAKEELKTAADTEA--------AARVEVCCGDFFSY----QGQFDLIWDCTFLCALEPSVRAEWAKQQKSLLKPGGL-LLTCIFPIVDKEGGPPFAMSVPLVRDLVEAEgFECAELKEQ 190
                 8888888754456888888888898887222579*************************9847************98777766655444........57899********9....799***************************8888764.4444444467789***********99987542777777765 PP

>> TIGR02021  BchM-ChlM: magnesium protoporphyrin O-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.5   0.0   9.5e-10   7.8e-07      51     122 ..      44     119 ..      30     125 .. 0.84

  Alignments for each domain:
  == domain 1    score: 26.5 bits;  conditional E-value: 9.5e-10
   TIGR02021  51 dslkGkkvlDAGCGtGllsielAkrGa.ivkavDiseklvelarkraeke...deaenveFevndleslegkfDav 122
                 d+ +G   l  GCG    +  lA +G+ +v+a D+s   v+ a+++++++   + a +ve   +d+ s +g+fD +
  MMETSP1137-20121227|2959_1  44 DLAQGAAALVPGCGRAYDALALASHGYsRVVALDLSSTAVNAAKEELKTAadtEAAARVEVCCGDFFSYQGQFDLI 119
                 36789999999***************857***************998765111456689***************86 PP

>> TIGR03534  RF_mod_PrmC: protein-(glutamine-N5) methyltransferase, release factor-specific
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0   4.3e-06    0.0035     103     160 ..      62     119 ..      47     121 .. 0.81

  Alignments for each domain:
  == domain 1    score: 14.7 bits;  conditional E-value: 4.3e-06
   TIGR03534 103 alalakelpdakviavDiseeAlkvarkNakrlglke....veflksdllealeekgkfdli 160
                 alala++    +v+a D+s++A++ a++ +k+   +e    ve++++d+++    +g+fdli
  MMETSP1137-20121227|2959_1  62 ALALASH-GYSRVVALDLSSTAVNAAKEELKTAADTEaaarVEVCCGDFFSY---QGQFDLI 119
                 6777777.6789***************99888666556678*********55...59***98 PP

>> TIGR00477  tehB: tellurite resistance protein TehB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0   3.8e-06    0.0031      78     173 ..      52     151 ..      43     190 .. 0.82

  Alignments for each domain:
  == domain 1    score: 14.7 bits;  conditional E-value: 3.8e-06
   TIGR00477  78 ldlGcGqGrnslylslaGyd.vdavdkneasi.asveeikekenldlrta..vydinaaaldedydfilstvvllfleaervpeiianmkehtkpGGynl 173
                 l  GcG+  ++l l+  Gy  v a+d +++++ a+ ee+k+  + +  ++  v   +  + + ++d+i     l  le     e  ++ k   kpGG  l
  MMETSP1137-20121227|2959_1  52 LVPGCGRAYDALALASHGYSrVVALDLSSTAVnAAKEELKTAADTEAAARveVCCGDFFSYQGQFDLIWDCTFLCALEPSVRAEWAKQQKSLLKPGGLLL 151
                 667****************6599*****99994455677777777655440044556678899*******999999999999999999999999999755 PP

>> TIGR00406  prmA: ribosomal protein L11 methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   2.6e-05     0.022     161     204 ..      49      92 ..      21     153 .. 0.80

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 2.6e-05
   TIGR00406 161 kkviDvGcGSGiLsiaalklgaakvvavDiDplavesarkNlel 204
                   ++  GcG    ++a++  g ++vva+D+ + av++a++ l+ 
  MMETSP1137-20121227|2959_1  49 AAALVPGCGRAYDALALASHGYSRVVALDLSSTAVNAAKEELKT 92 
                 445556********************************998875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (217 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.20u 0.17s 00:00:00.37 Elapsed: 00:00:00.28
# Mc/sec: 1022.92
//
Query:       MMETSP1137-20121227|2960_1  [L=500]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (500 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       107  (0.0260848); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.17s 00:00:00.51 Elapsed: 00:00:00.55
# Mc/sec: 1199.90
//
Query:       MMETSP1137-20121227|2961_1  [L=221]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.6e-18   64.5   9.7    2.2e-18   64.1   6.7    1.1  1  TIGR00785 dass: transporter, divalent anion:Na+ symporter (DASS) family
    2.6e-05   21.4   8.1    3.7e-05   20.9   5.6    1.1  1  TIGR00935 2a45: arsenical pump membrane protein


Domain annotation for each model (and alignments):
>> TIGR00785  dass: transporter, divalent anion:Na+ symporter (DASS) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.1   6.7     1e-21   2.2e-18     326     439 ..      14     128 ..       2     135 .. 0.85

  Alignments for each domain:
  == domain 1    score: 64.1 bits;  conditional E-value: 1e-21
   TIGR00785 326 lseklvkil..eglsptivvlllvvlfvlllyefaSntAltallvpifvsvasvlgvplellalalalsaslagillpvatppnaivYgsGyvkikdmwkvGlilgivslivlllv 439
                 ls kl ++l   +  p  + ll+++l++ + + +aSn A++++ vp+++++a++++v +  l + + l  sla ++lpv+tppna+++ sG +   dm  +G+ lg+v++++++l 
  MMETSP1137-20121227|2961_1  14 LSAKLGEHLewLEPLPLTIALLMLMLITAAVTSVASNVATASIFVPVVATLAQSMEVHPLYLLIPVTLTTSLA-FVLPVSTPPNALAFASGRLTVVDMAPLGFALGLVGVALVILA 128
                 45555555533233446667788899999********************************************.***********************************9988765 PP

>> TIGR00935  2a45: arsenical pump membrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   5.6   1.8e-08   3.7e-05      95     198 ..      34     137 ..      30     154 .. 0.84

  Alignments for each domain:
  == domain 1    score: 20.9 bits;  conditional E-value: 1.8e-08
   TIGR00935  95 ivllvLlgAvvsallandgaaLlltPvviallevlglnkktilafvviagfiadaaslvlivsnlviivsadlfglgFa..eytsvmligvilvlvatlllLrllf 198
                 + +l+L++A+v+++  n+++a ++ Pvv +l + + + +  +l+ v  ++ +a    +v  ++n +  +s  l  ++ a  ++++  l+gv lv++at +   l+f
  MMETSP1137-20121227|2961_1  34 LLMLMLITAAVTSVASNVATASIFVPVVATLAQSMEVHPLYLLIPVTLTTSLAFV-LPVSTPPNALAFASGRLTVVDMAplGFALG-LVGVALVILATNTTGTLFF 137
                 5699********************************************9999965.57899*********9997777762256555.5666677777766655555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (221 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       184  (0.0448562); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.24u 0.14s 00:00:00.38 Elapsed: 00:00:00.36
# Mc/sec: 810.27
//
Query:       MMETSP1137-20121227|2962_1  [L=387]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (387 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        68  (0.0165773); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.14s 00:00:00.42 Elapsed: 00:00:00.33
# Mc/sec: 1547.87
//
Query:       MMETSP1137-20121227|2965_1  [L=139]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (139 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        65  (0.0158459); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.13s 00:00:00.30 Elapsed: 00:00:00.36
# Mc/sec: 509.62
//
Query:       MMETSP1137-20121227|2966_1  [L=148]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      1e-38  130.7   0.0    1.2e-38  130.5   0.0    1.0  1  TIGR00021 rpiA: ribose 5-phosphate isomerase A


Domain annotation for each model (and alignments):
>> TIGR00021  rpiA: ribose 5-phosphate isomerase A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  130.5   0.0   2.9e-42   1.2e-38      91     217 ..       2     140 ..       1     141 [. 0.91

  Alignments for each domain:
  == domain 1    score: 130.5 bits;  conditional E-value: 2.9e-42
   TIGR00021  91 iKGgGgallrEKivasaskrfiviaDesKlvkklg.kfplPvevvpfaakavleklek....egleaelrka.......ekagpvvTdngnyilDvkfekiiedpealeeelksipGvvetGlfidmadkvivgtkdgv 217
                 +KGgGgallrEK+v+  +k+fivi+DesKl ++lg +f +P+ev pf+++++++k+ k    +g++++lr++         +++ +Tdngnyi+Dv+f++ i d+ a ++el+++ Gvv++G+f++ma++viv+ kdg 
  MMETSP1137-20121227|2966_1   2 VKGGGGALLREKMVEVLAKKFIVIVDESKLCESLGpSFAVPIEVTPFCVHSTMRKIGKlptmAGGTPRLRTGsvatnkpDGEELATTDNGNYIIDVSFDAPIGDAAAAAAELSATCGVVDHGFFCGMASEVIVAGKDGL 140
                 8*****************************************************9999999878899999764322112346789****************************************************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (148 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        76  (0.0185275); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.17u 0.15s 00:00:00.32 Elapsed: 00:00:00.26
# Mc/sec: 751.32
//
Query:       MMETSP1137-20121227|2967_1  [L=441]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.3e-05   22.6   8.5    1.3e-05   22.6   5.9    2.6  2  TIGR00950 2A78: carboxylate/amino acid/amine transporter
  ------ inclusion threshold ------
      0.094    9.3   3.2       0.17    8.4   2.2    1.4  1  TIGR00400 mgtE: magnesium transporter


Domain annotation for each model (and alignments):
>> TIGR00950  2A78: carboxylate/amino acid/amine transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.6   5.9   6.4e-09   1.3e-05      16     119 ..      34     144 ..      24     152 .. 0.91
   2 ?    0.1   0.8     0.047        97      47      81 ..     236     270 ..     224     283 .. 0.76

  Alignments for each domain:
  == domain 1    score: 22.6 bits;  conditional E-value: 6.4e-09
   TIGR00950  16 lplyfavlrrlifallllLpllrlr.......nslkrllrllllgalqlgvfyvllflavkkltvaiaalllvlaPlyvtllsdllekervrkkkllAavlalaGivllls 119
                  ++ +++ r++++++l l + ++++        s  ++   +l+g l ++v++  ++++  k+  a a+ll++l P+ ++ll ++l k  +  ++++A vl+l+ i++++ 
  MMETSP1137-20121227|2967_1  34 QSSVILIWRFILVGILNLVVAVFTQggfrelwMSSSKVPLQMLIGSLIVAVTNIGFVFSLLKVDPAKALLLISLNPIWAALLGKVLLKDVLPTRTIVAQVLSLISIIIVIV 144
                 577788889999999999999999999999998999999******************************************************************888765 PP

  == domain 2    score: 0.1 bits;  conditional E-value: 0.047
   TIGR00950  47 lrllllgalqlgvfyvllflavkkltvaiaalllv 81 
                 +  ll+    +++++v l+la  +lt+a++al+l 
  MMETSP1137-20121227|2967_1 236 WLFLLINGAGVAAYNVALVLAPRYLTGAEVALVLL 270
                 44555556688999999999999999999999864 PP

>> TIGR00400  mgtE: magnesium transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   2.2   8.3e-05      0.17     367     420 ..      44      99 ..      31     114 .. 0.84

  Alignments for each domain:
  == domain 1    score: 8.4 bits;  conditional E-value: 8.3e-05
   TIGR00400 367 avlavvvavvavflqgdllvafvvassLfvsllvakl..aGgllPivlkklkldPa 420
                 +++++++ vvavf qg ++   + +s + + +l+++l  a + + +v+ +lk+dPa
  MMETSP1137-20121227|2967_1  44 ILVGILNLVVAVFTQGGFRELWMSSSKVPLQMLIGSLivAVTNIGFVFSLLKVDPA 99 
                 57899***********99999999999999999998622568899**********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (441 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       124  (0.0302292); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.32u 0.15s 00:00:00.47 Elapsed: 00:00:00.61
# Mc/sec: 954.22
//
Query:       MMETSP1137-20121227|2968_1  [L=108]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0011   17.0   0.8     0.0031   15.6   0.1    1.9  2  TIGR00823 EIIA-LAC: PTS system, lactose-specific IIa component


Domain annotation for each model (and alignments):
>> TIGR00823  EIIA-LAC: PTS system, lactose-specific IIa component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.0      0.05   2.1e+02      15      31 ..      35      53 ..      25      71 .. 0.60
   2 !   15.6   0.1   7.5e-07    0.0031      14      35 ..      73      94 ..      61     103 .. 0.87

  Alignments for each domain:
  == domain 1    score: 0.1 bits;  conditional E-value: 0.05
   TIGR00823 15 GdaRskalea..lkaakaG 31
                Gd+Rs a e   ++ a++G
  MMETSP1137-20121227|2968_1 35 GDGRSDADEGdfVDTAQRG 53
                6666666543225555555 PP

  == domain 2    score: 15.6 bits;  conditional E-value: 7.5e-07
   TIGR00823 14 aGdaRskalealkaakaGdfak 35
                +G+aRs+alea+  a+aGd+  
  MMETSP1137-20121227|2968_1 73 GGNARSMALEAIPXAEAGDVST 94
                79*****************875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (108 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        51  (0.012433); expected 82.0 (0.02)
Passed bias filter:                       36  (0.00877621); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.15u 0.16s 00:00:00.31 Elapsed: 00:00:00.55
# Mc/sec: 259.18
//
Query:       MMETSP1137-20121227|2969_1  [L=320]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (320 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        77  (0.0187713); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.14s 00:00:00.40 Elapsed: 00:00:00.46
# Mc/sec: 918.19
//
Query:       MMETSP1137-20121227|2970_1  [L=212]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (212 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       165  (0.0402243); expected 82.0 (0.02)
Passed bias filter:                      110  (0.0268162); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.12s 00:00:00.32 Elapsed: 00:00:00.35
# Mc/sec: 799.48
//
Query:       MMETSP1137-20121227|2972_1  [L=179]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (179 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        64  (0.0156021); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.16s 00:00:00.34 Elapsed: 00:00:00.45
# Mc/sec: 525.02
//
Query:       MMETSP1137-20121227|2973_1  [L=247]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.6e-46  156.8   0.0    1.8e-46  156.6   0.0    1.0  1  TIGR00005 rluA_subfam: pseudouridine synthase, RluA family
    1.4e-15   54.9   0.0    1.9e-15   54.5   0.0    1.1  1  TIGR01621 RluA-like: pseudouridine synthase Rlu family protein, TIGR01621
    8.6e-05   20.2   0.0    0.00024   18.7   0.0    1.9  1  TIGR00093 TIGR00093: pseudouridine synthase


Domain annotation for each model (and alignments):
>> TIGR00005  rluA_subfam: pseudouridine synthase, RluA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  156.6   0.0   1.3e-49   1.8e-46      73     297 ..       3     225 ..       1     226 [. 0.89

  Alignments for each domain:
  == domain 1    score: 156.6 bits;  conditional E-value: 1.3e-49
   TIGR00005  73 ldilfeDedilvidKPsglvvhptggy...ekntvlnallahlkeelvsrleivhRLDrdTSGllvvaktekaleeLkeqlkektvkkeYvalvkgefkskegtvdaplarvenkkglvavakssgkeavTvfkvlerdekaslvelkl.lTGRtHQiRVHlqylghplagDplYgnksvkgksleaeaklkrqaLhaselgfthpatgelleleaplpedlkelleal 297
                 l i++e    l+++KP+gl++h+++     ++ +++  l  ++     + +++vhRLDrdTSG +++akt+ a++eL+++lk+ +  k Y+a+ +ge+  ++g+  +pl  +++++ + +  + +  +  T ++v++  +k s vel l  TGRtHQiR H +   h ++gD+ Yg+ +  +  ++++ ++ ++aLha++l+++ + +g +++++a+lpe  + +le+l
  MMETSP1137-20121227|2973_1   3 LPIVYEESTWLAVNKPAGLAAHGSSVGgldSEVSLASLLSEQCS----MPVHPVHRLDRDTSGCMLFAKTPAAAAELQRSLKRAETSKCYQAVLRGEVGGHSGQWTQPLTGKAESRRNPQGLSRARLPTTTCYQVISLGHKLSFVELTLgSTGRTHQIRKHAAVNRHAVIGDRRYGDPKY-NARMSEQLTFSGMALHAARLRLA-LDSGSVVTVQAELPESWEAMLETL 225
                 67********************9864311155567777888888....89***********************************************************988887777666665456999******************967*************************9666.56668999************986.899*************99999987 PP

>> TIGR01621  RluA-like: pseudouridine synthase Rlu family protein, TIGR01621
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.5   0.0   1.4e-18   1.9e-15       2     185 ..       3     202 ..       2     229 .. 0.73

  Alignments for each domain:
  == domain 1    score: 54.5 bits;  conditional E-value: 1.4e-18
   TIGR01621   2 leilfrhsdfvlinksegisvhkd.....dgetglleevakqlgvekvylvhrldkvtsGilllalnaesaselsrlfaekkikktylalsdkkpkkkqGlii...Gdmeksregawklvrskenpaitrfesvsiaeklrlf.ilkphtGkthqlrvalks.....lGsailGdslygk..aee..sdrtylhafklefdy 185
                 l i+++ s ++++nk+ g++ h       d e  l+ +++ q + + v+ vhrld+ tsG +l+a+   +a+el r + + +  k y a+         G  +    +   sr+    l r++  p+ t ++ +s  +kl +  +    tG+thq+r          +G    Gd+ y+   +e+     + lha +l++  
  MMETSP1137-20121227|2973_1   3 LPIVYEESTWLAVNKPAGLAAHGSsvgglDSEVSLASLLSEQCSMP-VHPVHRLDRDTSGCMLFAKTPAAAAELQRSLKRAETSKCYQAVLRGEVGGHSGQWTqplTGKAESRRNPQGLSRAR-LPTTTCYQVISLGHKLSFVeLTLGSTGRTHQIRKHAAVnrhavIGDRRYGDPKYNArmSEQltFSGMALHAARLRLAL 202
                 679**************99888762222367999999999999876.9*****************************************9777666666643311145567899999999876.6899***********9876355689********765550011145555555555552111111123457777777654 PP

>> TIGR00093  TIGR00093: pseudouridine synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.0   1.8e-07   0.00024      27      80 ..      45     100 ..      16     186 .. 0.66

  Alignments for each domain:
  == domain 1    score: 18.7 bits;  conditional E-value: 1.8e-07
   TIGR00093  27 rgkklaavGRLDrdseGlllltddgelqhrlthp..ekevektYlvqvegsvtded 80 
                  +  +++v RLDrd++G +l+++  + ++ l +   + e+ k Y + + g+v  + 
  MMETSP1137-20121227|2973_1  45 CSMPVHPVHRLDRDTSGCMLFAKTPAAAAELQRSlkRAETSKCYQAVLRGEVGGHS 100
                 46789*****************99888888876422556789***99999986544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (247 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        76  (0.0185275); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.23u 0.16s 00:00:00.39 Elapsed: 00:00:00.32
# Mc/sec: 1018.79
//
Query:       MMETSP1137-20121227|2974_1  [L=274]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (274 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        57  (0.0138957); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.15s 00:00:00.36 Elapsed: 00:00:00.56
# Mc/sec: 634.47
//
Query:       MMETSP1137-20121227|2975_1  [L=506]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.7e-05   19.2   2.0     0.0071   12.3   0.0    2.9  3  TIGR00870 trp: transient-receptor-potential calcium channel protein


Domain annotation for each model (and alignments):
>> TIGR00870  trp: transient-receptor-potential calcium channel protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    0.6   0.0    0.0057        23     131     155 ..     224     248 ..     216     251 .. 0.90
   2 !   12.3   0.0   1.7e-06    0.0071     129     160 ..     255     286 ..     250     291 .. 0.93
   3 !    4.3   0.0   0.00045       1.8     132     156 ..     291     315 ..     286     327 .. 0.91

  Alignments for each domain:
  == domain 1    score: 0.6 bits;  conditional E-value: 0.0057
   TIGR00870 131 gitalilAihkqnyeivklLlekga 155
                   t l++A+ +  + iv+ Ll +ga
  MMETSP1137-20121227|2975_1 224 ERTLLMIAAAESRLAIVTELLSRGA 248
                 5788********************9 PP

  == domain 2    score: 12.3 bits;  conditional E-value: 1.7e-06
   TIGR00870 129 tkgitalilAihkqnyeivklLlekgasvear 160
                 ++g tal lA ++ n  ++++Ll+ ga+v+a+
  MMETSP1137-20121227|2975_1 255 SQGCTALLLACMTSNEGVIQALLDAGADVNAK 286
                 6899*************************987 PP

  == domain 3    score: 4.3 bits;  conditional E-value: 0.00045
   TIGR00870 132 italilAihkqnyeivklLlekgas 156
                  t+li+A      +iv+lLl+ ga+
  MMETSP1137-20121227|2975_1 291 LTPLIMACRAGHSTIVRLLLNAGAR 315
                 69*********************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (506 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       172  (0.0419308); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.14s 00:00:00.52 Elapsed: 00:00:00.47
# Mc/sec: 1420.99
//
Query:       MMETSP1137-20121227|2976_1  [L=227]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (227 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        82  (0.0199902); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.16s 00:00:00.35 Elapsed: 00:00:00.32
# Mc/sec: 936.30
//
Query:       MMETSP1137-20121227|2977_1  [L=597]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.6e-77  257.7   0.4    2.4e-33  113.6   0.0    3.3  3  TIGR03594 GTPase_EngA: ribosome-associated GTPase EngA
    2.4e-17   61.0   0.1    1.2e-06   25.7   0.0    3.1  3  TIGR00450 mnmE_trmE_thdF: tRNA modification GTPase TrmE
    3.2e-14   50.9   0.0    2.4e-05   22.0   0.0    4.0  3  TIGR00231 small_GTP: small GTP-binding protein domain
    1.8e-13   48.3   0.0    1.2e-06   26.0   0.0    3.3  3  TIGR00436 era: GTP-binding protein Era
    1.5e-09   35.0   0.0    0.00041   17.1   0.0    3.2  3  TIGR03918 GTP_HydF: [FeFe] hydrogenase H-cluster maturation GTPase HydF
    4.2e-07   27.3   0.3      6e-05   20.2   0.0    3.9  5  TIGR03597 GTPase_YqeH: ribosome biogenesis GTPase YqeH
    4.3e-07   27.4   0.1    2.8e-05   21.4   0.0    2.9  3  TIGR03596 GTPase_YlqF: ribosome biogenesis GTP-binding protein YlqF
    4.8e-07   26.3   0.2    1.2e-05   21.7   0.0    2.3  2  TIGR01393 lepA: GTP-binding protein LepA
    1.6e-05   21.6   0.8     0.0038   13.8   0.0    3.1  3  TIGR00437 feoB: ferrous iron transport protein B
    6.8e-05   19.7   0.0      0.013   12.2   0.0    2.6  2  TIGR03156 GTP_HflX: GTP-binding protein HflX
    6.9e-05   19.9   0.3      0.058   10.3   0.0    3.3  3  TIGR00750 lao: LAO/AO transport system ATPase
    0.00096   17.0   0.0      0.034   12.0   0.0    2.5  2  TIGR00176 mobB: molybdopterin-guanine dinucleotide biosynthesis protein B
      0.001   15.6   1.1       0.11    8.9   0.0    2.3  2  TIGR00475 selB: selenocysteine-specific translation elongation factor
     0.0012   16.4   0.5        1.2    6.6   0.0    3.3  3  TIGR03598 GTPase_YsxC: ribosome biogenesis GTP-binding protein YsxC
     0.0022   15.9   0.8       0.01   13.8   0.1    2.3  2  TIGR01837 PHA_granule_1: poly(hydroxyalkanoate) granule-associated protein
  ------ inclusion threshold ------
      0.025   11.4   0.0       0.43    7.3   0.0    2.4  3  TIGR02729 Obg_CgtA: Obg family GTPase CgtA


Domain annotation for each model (and alignments):
>> TIGR03594  GTPase_EngA: ribosome-associated GTPase EngA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.8   0.0   2.7e-17     7e-15       4      58 ..       9      73 ..       6      85 .. 0.85
   2 !   87.4   0.1   8.4e-28   2.2e-25      64     183 ..     123     314 ..     117     323 .. 0.77
   3 !  113.6   0.0   9.4e-36   2.4e-33     218     413 ..     350     547 ..     341     550 .. 0.89

  Alignments for each domain:
  == domain 1    score: 52.8 bits;  conditional E-value: 2.7e-17
   TIGR03594  4 aivGrpNVGKStLfNrlvkkrk..........AivedtpgvTRDrkygeaelkgkefiliDTgGl 58
                 ivG pN GKStL+Nrl+k+            A+v+ ++g+TRDr  g++++++  f+liDTgG+
  MMETSP1137-20121227|2977_1  9 LIVGAPNAGKSTLYNRLIKNSLqpgyrvlkapALVSPVAGTTRDRLIGRVDWHDAAFTLIDTGGV 73
                59****************97533333334444********************************8 PP

  == domain 2    score: 87.4 bits;  conditional E-value: 8.4e-28
   TIGR03594  64 elekeireqaelaieeadvilfvvdareglteeDeeiaklLrksk....kpvilvvNKvdnkkeeaeaaefyslGlgevlaiSaehgrgikdLldeileelpeeee..........eeeeeeeee.................................................................pikiaiiGr 183
                 ++ ++++eq+ +ai++a+vilf+vd+++g+t +De ia+ Lr         v+lv+NKvd++ +e ++++f++lGlge++ +Sa+hg+g++dLld+i++ l+e+ +          +       e                                                                  ik+a++Gr
  MMETSP1137-20121227|2977_1 123 DIFDAVEEQVLTAIDDASVILFMVDVNAGVTVTDEYIARALRPVMrngpPAVLLVANKVDTEMHEYQVHDFWKLGLGEPFSLSAQHGSGTGDLLDRIVSILQERGDlvdkhseaesD-------EelemliseaeaklssakqreanvrvmesefeeevafpedesiydiaraevaevaddfgseldgsqVIKVAVVGR 314
                 57789************************************97763344569**********************************************9998876545444333330.......134444555555555555556666666666666666777777777777777777777777777666678888887 PP

  == domain 3    score: 113.6 bits;  conditional E-value: 9.4e-36
   TIGR03594 218 vevkgkkylliDTAGirrkk...kveekveklsvlrtlkaieradvvllvlDategiseqDl..kiaglileegkalvivvNKwDlvkdekeleelkkeleeklkflkfapivfiSAltgkgveklleaikevyeslskristsklnrvleeavekhppplvkgkrlklkYatqvktnpptfvlfvnrpeklkesYkrYLe 413
                 v+v +++++l+DTAGir+ +   + +e +++++v r+l+ai++++v+ll+lDa++g++      +ia+   +e   l ++      + +++e++++++++ee+l  lk+api+++SA++g+g+++ l+ + e++++ ++r+s  +ln+vl++a+  +p+p +kg rl++kYatq +t+ ptf++ +nr  +l+ s ++++ 
  MMETSP1137-20121227|2977_1 350 VHVADHEFILLDTAGIRKHEaggQEREMLDRVAVRRALQAIADCHVALLLLDAKQGLQAAGHgdRIARRRPDE--ELHLCREQERSL-HAEEYKKIQTDIEERLGSLKYAPILYTSAKEGTGIDEALQLVVEAANARRQRVSKRELNEVLKRAMLIKPMPYIKGARLRIKYATQKQTEVPTFLMYINRSVSLHPSVSKWIX 547
                 678899************9722256788999*************************99865411666655554..455667777777.99******************************************************************************************************999888875 PP

>> TIGR00450  mnmE_trmE_thdF: tRNA modification GTPase TrmE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.7   0.0   4.7e-09   1.2e-06     212     302 ..       8     114 ..       1     126 [. 0.69
   2 !    8.9   0.0   0.00058      0.15     280     336 ..     130     191 ..     114     267 .. 0.66
   3 !   22.9   0.0   3.4e-08   8.8e-06     253     304 ..     351     408 ..     345     447 .. 0.86

  Alignments for each domain:
  == domain 1    score: 25.7 bits;  conditional E-value: 4.7e-09
   TIGR00450 212 laivGktNvGKSSLlNallkkd..........raiVsdikGttRDvvEedleleGilvkllDtAGiRe......aadkvEklGiekslkaikeadlvlyvlDaskpl 302
                   ivG +N+GKS L+N l+k+            a+Vs + GttRD + + ++ +   + l+Dt G+        a+    k+G ++ +k    +d++     a +++
  MMETSP1137-20121227|2977_1   8 SLIVGAPNAGKSTLYNRLIKNSlqpgyrvlkaPALVSPVAGTTRDRLIGRVDWHDAAFTLIDTGGVLGlegllpAKAGAKKVGFKRGTKPSASSDILAKAAAADQDQ 114
                 569*************998754222332221169*****************************98753111111555566666666666666666665555555555 PP

  == domain 2    score: 8.9 bits;  conditional E-value: 0.00058
   TIGR00450 280 ekslkaikeadlvlyvlDaskpltkddeliitlkk.....kkkdlllvlNKiDLaeleilks 336
                 e+ l ai++a+++l+++D++ + t  de i++  +         +llv NK D   +e ++ 
  MMETSP1137-20121227|2977_1 130 EQVLTAIDDASVILFMVDVNAGVTVTDEYIARALRpvmrnGPPAVLLVANKVDTEMHEYQVH 191
                 566789*******************9999987543111103346899******986665554 PP

  == domain 3    score: 22.9 bits;  conditional E-value: 3.4e-08
   TIGR00450 253 eleGilvkllDtAGiReaa......dkvEklGiekslkaikeadlvlyvlDaskpltk 304
                 ++  + + llDtAGiR+++      + ++++ ++++l+ai ++ + l++lDa+++l+ 
  MMETSP1137-20121227|2977_1 351 HVADHEFILLDTAGIRKHEaggqerEMLDRVAVRRALQAIADCHVALLLLDAKQGLQA 408
                 67778999********996333333689**************************9864 PP

>> TIGR00231  small_GTP: small GTP-binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.0   0.0   9.4e-08   2.4e-05       7      62 ..       9      72 ..       5      79 .. 0.82
   2 !   11.5   0.0   0.00016     0.041      74     159 ..     129     216 ..     120     221 .. 0.81
   3 !   11.7   0.0   0.00014     0.035      54      99 ..     356     408 ..     345     478 .. 0.80

  Alignments for each domain:
  == domain 1    score: 22.0 bits;  conditional E-value: 9.4e-08
   TIGR00231  7 vivGhvdvGKstLlnsllknkisiteskp..........gvtrdyvteqieedGktykvnllDTaG 62
                +ivG +++GKstL n+l+kn+  +  ++           g+trd     +      + ++l+DT+G
  MMETSP1137-20121227|2977_1  9 LIVGAPNAGKSTLYNRLIKNSLQPGYRVLkapalvspvaGTTRDRLIGRVDWHD--AAFTLIDTGG 72
                69*******************655544335668888888999998888666666..889****999 PP

  == domain 2    score: 11.5 bits;  conditional E-value: 0.00016
   TIGR00231  74 vreverslevvdivilvldveeglekqtkeiiheak..kkgvp..iilvvnKiDlkddlktkvkslfaklnaepiielsaetgknidklf 159
                  ++v   +++++++++++dv+ g++  ++ i+++++  + + p  ++lv+nK+D++    + + ++f kl+    + lsa++g++  +l 
  MMETSP1137-20121227|2977_1 129 EEQVLTAIDDASVILFMVDVNAGVTVTDEYIARALRpvMRNGPpaVLLVANKVDTEM--HEYQVHDFWKLGLGEPFSLSAQHGSGTGDLL 216
                 57899999999*************999999999886442333234889********9..9999999999999999999999999876665 PP

  == domain 3    score: 11.7 bits;  conditional E-value: 0.00014
   TIGR00231  54 kvnllDTaG.......qedfdairrlyvreverslevvdivilvldveeglek 99 
                 ++ llDTaG        ++++ + r  vr++ + + ++ +++l+ld+++gl++
  MMETSP1137-20121227|2977_1 356 EFILLDTAGirkheagGQEREMLDRVAVRRALQAIADCHVALLLLDAKQGLQA 408
                 699******999766644555899999**********************9964 PP

>> TIGR00436  era: GTP-binding protein Era
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.0   0.0   4.5e-09   1.2e-06       5      58 ..      10      73 ..       7      76 .. 0.84
   2 !   12.8   0.0   4.9e-05     0.013      67     165 ..     126     225 ..     119     251 .. 0.75
   3 !    5.6   0.0    0.0077         2      49      95 ..     356     408 ..     347     492 .. 0.63

  Alignments for each domain:
  == domain 1    score: 26.0 bits;  conditional E-value: 4.5e-09
   TIGR00436  5 ilGrpnvGKSTLlNkllgqki..........sivSpkaqTTrnrisgiltegasqiifiDtPGl 58
                i+G pn+GKSTL N+l+++            ++vSp+a TTr r+ g +  +    ++iDt G+
  MMETSP1137-20121227|2977_1 10 IVGAPNAGKSTLYNRLIKNSLqpgyrvlkapALVSPVAGTTRDRLIGRVDWHDAAFTLIDTGGV 73
                9****************975433333333348*****************************996 PP

  == domain 2    score: 12.8 bits;  conditional E-value: 4.9e-05
   TIGR00436  67 ellvkeirkalsevdlilfvvdsdeknke.dellleklqklkap....vvlalnkldnkekdkllelidkeasllefkeiveisalkgenveelkaiveaklre 165
                 +++  ++  a+++  +ilf+vd ++     de +   l+++ ++    v+l+ nk+d + ++ +++ + k+   ++f     +sa++g+ +  l   +   l+e
  MMETSP1137-20121227|2977_1 126 DAVEEQVLTAIDDASVILFMVDVNAGVTVtDEYIARALRPVMRNgppaVLLVANKVDTEMHEYQVHDFWKLGLGEPF----SLSAQHGSGTGDLLDRIVSILQE 225
                 567788899****************99988*****999987764223378889999999888888888777777777....77777777777776666666665 PP

  == domain 3    score: 5.6 bits;  conditional E-value: 0.0077
   TIGR00436  49 qiifiDtPGlhe......kkhklnellvkeirkalsevdlilfvvdsdeknke 95 
                 + i++Dt G+ +      ++  l ++ v+ + +a+ +  + l+++d+++  + 
  MMETSP1137-20121227|2977_1 356 EFILLDTAGIRKheaggqEREMLDRVAVRRALQAIADCHVALLLLDAKQGLQA 408
                 5799999999763333324677899999*******************998766 PP

>> TIGR03918  GTP_HydF: [FeFe] hydrogenase H-cluster maturation GTPase HydF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.0   1.6e-06   0.00041      12      66 ..      10      73 ..       4      86 .. 0.85
   2 !    5.2   0.0    0.0065       1.7      80     170 ..     132     226 ..     123     242 .. 0.82
   3 !    8.6   0.0   0.00061      0.16      59     190 ..     358     502 ..     356     508 .. 0.66

  Alignments for each domain:
  == domain 1    score: 17.1 bits;  conditional E-value: 1.6e-06
   TIGR03918 12 lfGrrNaGKSsliNaltgqdv..........aivsdvpGtTtDpvekamEllplGpvvliDTaGl 66
                ++G  NaGKS+l N l+++++          a+vs v+GtT D     ++ ++  + +liDT G+
  MMETSP1137-20121227|2977_1 10 IVGAPNAGKSTLYNRLIKNSLqpgyrvlkapALVSPVAGTTRDRLIGRVDWHDA-AFTLIDTGGV 73
                89**************9977544455555559**************99999996.6789999997 PP

  == domain 2    score: 5.2 bits;  conditional E-value: 0.0065
   TIGR03918  80 trevlektdlallvvdaeaeleeleeelleelk...ekkip.vivvlnkidlkeeekekeklekkkeeevvlvsakekegieelkealiellpee 170
                   ++++ + ++l++vd +a+++ ++e ++++l+   ++  p v++v+nk+d++ +e + ++  k    e+ ++sa++++g  +l +++++ l+e+
  MMETSP1137-20121227|2977_1 132 VLTAIDDASVILFMVDVNAGVTVTDEYIARALRpvmRNGPPaVLLVANKVDTEMHEYQVHDFWKLGLGEPFSLSAQHGSGTGDLLDRIVSILQER 226
                 5678899999********99999999988877632133333377899******9999988888888899999********999999999988765 PP

  == domain 3    score: 8.6 bits;  conditional E-value: 0.00061
   TIGR03918  59 vliDTaGldDegeLGelR.......vektrevlektdlallvvdaeaeleele..eelleelkekkipvivvlnkidlkeeeke.....keklekkkeeevvlvsakekegieelkealiellpeeaeektlvgdLvkkgdlvvlv 190
                 +l+DTaG+  + + G+ R       v+++ ++++ + +all++da+++l+++   ++++++  ++++ +    +++  +ee k+     +e+l + k  +++++sake++gi+e  + ++e+++++ +++    +L +  +  +l+
  MMETSP1137-20121227|2977_1 358 ILLDTAGIRKHEAGGQERemldrvaVRRALQAIADCHVALLLLDAKQGLQAAGhgDRIARRRPDEELHLCREQERSLHAEEYKKiqtdiEERLGSLKYAPILYTSAKEGTGIDEALQLVVEAANAR-RQRVSKRELNEVLKRAMLI 502
                 578999997766555555333333389*******************9887764115666666666666665554443333333332233444555567789999**********999999998776.5555555555555555555 PP

>> TIGR03597  GTPase_YqeH: ribosome biogenesis GTPase YqeH
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   0.0   2.4e-07     6e-05     157     216 ..       7      74 ..       1      99 [. 0.75
   2 ?    0.0   0.1      0.32        81      55     102 ..     130     182 ..     101     192 .. 0.57
   3 ?   -2.0   0.0       1.3   3.4e+02     204     219 ..     354     369 ..     350     388 .. 0.83
   4 ?    0.4   0.0      0.23        60     111     155 ..     440     482 ..     432     488 .. 0.73
   5 ?   -1.1   0.0      0.67   1.7e+02     259     283 ..     514     541 ..     506     550 .. 0.78

  Alignments for each domain:
  == domain 1    score: 20.2 bits;  conditional E-value: 2.4e-07
   TIGR03597 157 dvyvvGvtNVGKSsliNkllklnkgkkk.v....ittSkfpgTTld..lieipl.dkesvllDtpGii 216
                  +++vG+ N GKS+l N+l+k++ +    v      +S+  gTT d  + +++  d+  +l+Dt G++
  MMETSP1137-20121227|2977_1   7 TSLIVGAPNAGKSTLYNRLIKNSLQPGYrVlkapALVSPVAGTTRDrlIGRVDWhDAAFTLIDTGGVL 74 
                 579*****************98765433331111579********953334555678899******97 PP

  == domain 2    score: 0.0 bits;  conditional E-value: 0.32
   TIGR03597  55 lnllnslsekkalvvavvDi...fdlegslikelkrfvken...kvllvvNKid 102
                 + ++ +  ++ ++++ +vD+   + + + +i    r v +n    vllv+NK+d
  MMETSP1137-20121227|2977_1 130 E-QVLTAIDDASVILFMVDVnagVTVTDEYIARALRPVMRNgppAVLLVANKVD 182
                 3.3333334455566666653333444444444444333332225788888887 PP

  == domain 3    score: -2.0 bits;  conditional E-value: 1.3
   TIGR03597 204 dkesvllDtpGiinee 219
                 d+e +llDt+Gi ++e
  MMETSP1137-20121227|2977_1 354 DHEFILLDTAGIRKHE 369
                 67889*******9876 PP

  == domain 4    score: 0.4 bits;  conditional E-value: 0.23
   TIGR03597 111 ekikewlkkeakeeglkpvdillvsakkkkglkellelikkarek 155
                 +ki+  +++++   +lk + il++sak+++g++e l+l+ +a++ 
  MMETSP1137-20121227|2977_1 440 KKIQTDIEERLG--SLKYAPILYTSAKEGTGIDEALQLVVEAANA 482
                 555555555554..566779**************99998777763 PP

  == domain 5    score: -1.1 bits;  conditional E-value: 0.67
   TIGR03597 259 rldylkge...ktsftiyvskelkiHrt 283
                 r++y +++     +f +y+++ +++H +
  MMETSP1137-20121227|2977_1 514 RIKYATQKqteVPTFLMYINRSVSLHPS 541
                 77787777555679************76 PP

>> TIGR03596  GTPase_YlqF: ribosome biogenesis GTP-binding protein YlqF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   0.0   1.1e-07   2.8e-05     119     174 ..       6      74 ..       2      91 .. 0.66
   2 ?   -2.0   0.0       1.5   3.8e+02      51     108 ..     174     229 ..     129     246 .. 0.71
   3 ?    2.2   0.0     0.079        20      78     124 ..     456     502 ..     437     506 .. 0.86

  Alignments for each domain:
  == domain 1    score: 21.4 bits;  conditional E-value: 1.1e-07
   TIGR03596 119 iralvvGiPNvGKStliNrlakkkv..........akvgnkpgvTksqqwikl..sk.eleLlDtPGil 174
                    l+vG PN GKStl Nrl+k++           a v   +g T+   + ++  ++  ++L+Dt G+l
  MMETSP1137-20121227|2977_1   6 ATSLIVGAPNAGKSTLYNRLIKNSLqpgyrvlkapALVSPVAGTTRDRLIGRVdwHDaAFTLIDTGGVL 74 
                 5679*****************976411111111113455566777765544331132267777777776 PP

  == domain 2    score: -2.0 bits;  conditional E-value: 1.5
   TIGR03596  51 rlivlnkaDladpektkkwlkyfeekgkkalavnakkkkkvkkilkaikkllkekkek 108
                  l+v nk D   +e   +  ++++    + + ++a++++++  +l+ i ++l+e+ + 
  MMETSP1137-20121227|2977_1 174 VLLVANKVDTEMHEY--QVHDFWKLGLGEPFSLSAQHGSGTGDLLDRIVSILQERGDL 229
                 577888888654433..34555554444788888888888888888888888887665 PP

  == domain 3    score: 2.2 bits;  conditional E-value: 0.079
   TIGR03596  78 kkalavnakkkkkvkkilkaikkllkekkeklkakglkkkairalvv 124
                   +l+++ak+++++ + l+++ +++++++++ +++ l++   ra+ +
  MMETSP1137-20121227|2977_1 456 APILYTSAKEGTGIDEALQLVVEAANARRQRVSKRELNEVLKRAMLI 502
                 578999******************************99999998875 PP

>> TIGR01393  lepA: GTP-binding protein LepA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.1     0.038       9.6     125     180 ..     174     224 ..     111     302 .. 0.76
   2 !   21.7   0.0   4.8e-08   1.2e-05      89     181 ..     388     482 ..     382     498 .. 0.81

  Alignments for each domain:
  == domain 1    score: 2.2 bits;  conditional E-value: 0.038
   TIGR01393 125 iiPvinkidlPsadvervkkeieeviGldaeeailvsaktGigieelleaivkkvp 180
                 ++ v nk+d     +e  + +++++  l   e  ++sa++G g  +ll+ iv+ + 
  MMETSP1137-20121227|2977_1 174 VLLVANKVD-----TEMHEYQVHDFWKLGLGEPFSLSAQHGSGTGDLLDRIVSILQ 224
                 555666665.....5777889999999999999******************98654 PP

  == domain 2    score: 21.7 bits;  conditional E-value: 4.8e-08
   TIGR01393  89 rslaaceGalllvdaaqGveaqtlanvylal..ekdleiiPvinkidlPsadvervkkeieeviG.ldaeeailvsaktGigieelleaivkkvpa 181
                 +++a c  alll+da qG++a    +       +++l++        l + + ++++++iee +G l+ + ++  sak+G+gi+e l+ +v+   a
  MMETSP1137-20121227|2977_1 388 QAIADCHVALLLLDAKQGLQAAGHGDRIARRrpDEELHLCRE-QERSLHAEEYKKIQTDIEERLGsLKYAPILYTSAKEGTGIDEALQLVVEAANA 482
                 47899****************999987665411556665554.456899***************95577788999***************997665 PP

>> TIGR00437  feoB: ferrous iron transport protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.0   1.5e-05    0.0038       1      55 [.      12      77 ..      12      82 .. 0.81
   2 ?    1.3   0.0     0.093        24     133     198 ..     202     268 ..     172     308 .. 0.61
   3 ?    3.2   0.1     0.025       6.3     124     173 ..     446     499 ..     435     541 .. 0.65

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 1.5e-05
   TIGR00437  1 GnpNvGKstlfnaLtgsnqk...........vgNwpGvTVekkegklelkgedieivDlPGiYsLt 55
                G pN GKstl+n+L ++ ++           v+  +G+T ++  g++  ++  ++++D+ G+  L+
  MMETSP1137-20121227|2977_1 12 GAPNAGKSTLYNRLIKNSLQpgyrvlkapalVSPVAGTTRDRLIGRVDWHDAAFTLIDTGGVLGLE 77
                89***********987664322333333333999***************************98775 PP

  == domain 2    score: 1.3 bits;  conditional E-value: 0.093
   TIGR00437 133 vplsatkgrgieelkkaideekaiklvekkkraieilkeaeslaevkeklkelkqkl......kkglevleg 198
                  +lsa++g g+ +l + i        ++++ +++    eaes +e++  + e + kl      + + +v+e+
  MMETSP1137-20121227|2977_1 202 FSLSAQHGSGTGDLLDRIVS-----ILQERGDLVDKHSEAESDEELEMLISEAEAKLssakqrEANVRVMES 268
                 47899999999999999984.....44444444444444444444444444444444210000222222222 PP

  == domain 3    score: 3.2 bits;  conditional E-value: 0.025
   TIGR00437 124 LeerLG....vpvvplsatkgrgieelkkaideekaiklvekkkraieilkeae 173
                 +eerLG     p++ +sa++g+gi+e+ + + e  + +++  +kr ++++ +  
  MMETSP1137-20121227|2977_1 446 IEERLGslkyAPILYTSAKEGTGIDEALQLVVEAANARRQRVSKRELNEVLKRA 499
                 4566664333699***********999998886544444444444443333333 PP

>> TIGR03156  GTP_HflX: GTP-binding protein HflX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.2   0.0   5.1e-05     0.013     193     228 ..       9      50 ..       2      75 .. 0.67
   2 ?    4.6   0.0     0.011       2.7     263     349 ..     133     221 ..     120     223 .. 0.71

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 5.1e-05
   TIGR03156 193 alvGYTNaGKstllnaltka......evlaedklFATLdptt 228
                  +vG  NaGKstl n+l+k+      +vl++  l +    tt
  MMETSP1137-20121227|2977_1   9 LIVGAPNAGKSTLYNRLIKNslqpgyRVLKAPALVSPVAGTT 50 
                 489***************975555555666655555544444 PP

  == domain 2    score: 4.6 bits;  conditional E-value: 0.011
   TIGR03156 263 LeevaeadlllhvvDasdeeaeeqieaveevLeelgaeei.pvllvlNkidkle.eeel.eeleekkeeavlvsAkkgegleeLleaiee 349
                 L  + +a ++l +vD+    + +  e +++ L+ +  +    vllv Nk+d+   e ++ +  +    e   +sA++g+g+ +Ll++i +
  MMETSP1137-20121227|2977_1 133 LTAIDDASVILFMVDVNAGVTVT-DEYIARALRPVMRNGPpAVLLVANKVDTEMhEYQVhDFWKLGLGEPFSLSAQHGSGTGDLLDRIVS 221
                 66678899999999997665554.455666666655555416789******87633333033444558899**********999998865 PP

>> TIGR00750  lao: LAO/AO transport system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.3   0.0   0.00023     0.058      39      65 ..      10      36 ..       3      64 .. 0.83
   2 ?    1.7   0.0     0.093        24     217     286 ..     203     267 ..     174     278 .. 0.68
   3 ?    3.8   0.0     0.022       5.7     197     239 ..     439     482 ..     389     502 .. 0.75

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 0.00023
   TIGR00750 39 ltGvPGaGkstlveklieelrrrGlkv 65
                + G P aGkstl ++li++  + G++v
  MMETSP1137-20121227|2977_1 10 IVGAPNAGKSTLYNRLIKNSLQPGYRV 36
                789**********************99 PP

  == domain 2    score: 1.7 bits;  conditional E-value: 0.093
   TIGR00750 217 ktsavegrGikelvdaieehkkvlkksGkleekrr.ersveelkklveeevlkkvkakeevyrdllekvka 286
                   sa++g G  +l d i    ++l++ G l +k   + s eel +l++e+ +k  +ak+   r+  ++v +
  MMETSP1137-20121227|2977_1 203 SLSAQHGSGTGDLLDRIV---SILQERGDLVDKHSeAESDEELEMLISEAEAKLSSAKQ---REANVRVME 267
                 578999999999999886...57888887766655055666677777666655555544...444444444 PP

  == domain 3    score: 3.8 bits;  conditional E-value: 0.022
   TIGR00750 197 lsldleelferekgWr.PkvlktsavegrGikelvdaieehkkv 239
                 ++  + ++ er    +  ++l tsa+eg Gi+e  + + e  ++
  MMETSP1137-20121227|2977_1 439 YKKIQTDIEERLGSLKyAPILYTSAKEGTGIDEALQLVVEAANA 482
                 44444455555443332689*************99888776554 PP

>> TIGR00176  mobB: molybdopterin-guanine dinucleotide biosynthesis protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.0   0.0   0.00013     0.034       4      30 ..      10      36 ..       8      38 .. 0.95
   2 ?    2.0   0.0      0.16        40       4      38 ..     204     236 ..     202     250 .. 0.81

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 0.00013
   TIGR00176  4 ivgykdsGKTtlieklvkelkargyrV 30
                ivg  + GK tl ++l+k+  + gyrV
  MMETSP1137-20121227|2977_1 10 IVGAPNAGKSTLYNRLIKNSLQPGYRV 36
                89************************9 PP

  == domain 2    score: 2.0 bits;  conditional E-value: 0.16
   TIGR00176   4 ivgykdsGKTtlieklvkelkargyrVatiKHdah 38 
                 +++  +sG   l+ ++v  l++rg    + KH+  
  MMETSP1137-20121227|2977_1 204 LSAQHGSGTGDLLDRIVSILQERG--DLVDKHSEA 236
                 5678899*****************..555588754 PP

>> TIGR00475  selB: selenocysteine-specific translation elongation factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.3   0.2    0.0057       1.5      47     175 ..     114     234 ..     108     294 .. 0.82
   2 !    8.9   0.0   0.00044      0.11      64     177 ..     383     492 ..     380     510 .. 0.67

  Alignments for each domain:
  == domain 1    score: 5.3 bits;  conditional E-value: 0.0057
   TIGR00475  47 ledkvlgliDvPGHekflknalagvggidaalLvvdadeGvkaqtkEHLa.vlkllgikelivvltKaDrvdeeevkevEeelkeileeeeflknakivkvsAktGqGieeLkkelkn.Llesldakdkqk 175
                 ++d vl+ +D+   + + +++l+++  ++ +l +vd + Gv + t E +a  l+ +  +   +vl  a++vd e     E +++++ +        + + +sA+ G G ++L + +   L e+ d  dk++
  MMETSP1137-20121227|2977_1 114 QKDDVLETVDI--FDAVEEQVLTAIDDASVILFMVDVNAGVTV-TDEYIArALRPVMRNGPPAVLLVANKVDTE---MHEYQVHDFWKLG-L---GEPFSLSAQHGSGTGDLLDRIVSiLQERGDLVDKHS 234
                 45566666666..34555788999999*************987.777764267777666678899999999999...7789999987543.3...47999***********99988762556667667765 PP

  == domain 2    score: 8.9 bits;  conditional E-value: 0.00044
   TIGR00475  64 lknalagvggidaalLvvdadeGvkaqtkEHLavlkllgikelivvltKaDrvdeeevkevEeelkeileeeeflknakivkvsAktGqGieeLkkelknLlesldakdkqkpl 177
                 ++ al +++  + alL+ da++G++a  +   ++++    +el     +      ee k++ +    i e  + lk a i+ +sAk+G Gi+e  + + + ++   ++  ++ l
  MMETSP1137-20121227|2977_1 383 VRRALQAIADCHVALLLLDAKQGLQAAGHG-DRIARRRPDEELHLCREQERSLHAEEYKKIQTD---IEERLGSLKYAPILYTSAKEGTGIDEALQLVVEAANARRQRVSKREL 492
                 577899999999999999999998664433.477777776666555555555555555555555...55556667777**************9666555555544444444455 PP

>> TIGR03598  GTPase_YsxC: ribosome biogenesis GTP-binding protein YsxC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.6   0.0    0.0047       1.2      23      41 ..      10      28 ..       3      35 .. 0.88
   2 ?    1.6   0.0      0.16        42      95     141 ..     133     183 ..     120     195 .. 0.74
   3 ?    4.2   0.0     0.026       6.8     104     183 ..     396     474 ..     352     477 .. 0.74

  Alignments for each domain:
  == domain 1    score: 6.6 bits;  conditional E-value: 0.0047
   TIGR03598 23 faGrSNvGKSsliNaLtnr 41
                ++G  N+GKS+l N L+++
  MMETSP1137-20121227|2977_1 10 IVGAPNAGKSTLYNRLIKN 28
                6899************987 PP

  == domain 2    score: 1.6 bits;  conditional E-value: 0.16
   TIGR03598  95 LekrenLkgvvllvDirhelkelDlellellkeakip....vlvvltKaDk 141
                 L+  ++ + ++++vD+  +++ +D+ + + l+   ++    vl+v++K+D 
  MMETSP1137-20121227|2977_1 133 LTAIDDASVILFMVDVNAGVTVTDEYIARALRPVMRNgppaVLLVANKVDT 183
                 566666778999*************99998876543222227888888885 PP

  == domain 3    score: 4.2 bits;  conditional E-value: 0.026
   TIGR03598 104 vvllvDirhelkelDlellellkeakipvlvvltKaDklkkselkkalkkvkkelkkeeekvevllfSslkkegieelka 183
                  +ll+D++++l++  +      ++ + ++++       l+ +e+kk +++++++l +  +++ +l++S+++++gi+e+ +
  MMETSP1137-20121227|2977_1 396 ALLLLDAKQGLQAAGHGDRIARRRPDEELHLCREQERSLHAEEYKKIQTDIEERLGSL-KYAPILYTSAKEGTGIDEALQ 474
                 5566666666666655544445555566666666666788899999999999999999.5569*************9876 PP

>> TIGR01837  PHA_granule_1: poly(hydroxyalkanoate) granule-associated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0       2.2   5.6e+02      35      67 ..     107     138 ..     101     144 .. 0.70
   2 !   13.8   0.1   3.9e-05      0.01      17      83 ..     202     274 ..     186     276 .. 0.78

  Alignments for each domain:
  == domain 1    score: -1.5 bits;  conditional E-value: 2.2
   TIGR01837  35 Gekaekrakkrvdksvdalreevktkleqvrdk 67 
                  ++a++++k  v + vd +   v+ ++  + d 
  MMETSP1137-20121227|2977_1 107 AAAADQDQKDDVLETVDIFD-AVEEQVLTAIDD 138
                 56788999999999999886.566655555454 PP

  == domain 2    score: 13.8 bits;  conditional E-value: 3.9e-05
   TIGR01837  17 larvqeegs...klfdeLV....keGekaekrakkrvdksvdalreevktkleqvrdkvqrnldklekafderv 83 
                 ++ + + gs   +l+d++V    ++G+ ++k++  ++d++++ l  e++ kl+ +  + + n + +e  f+e v
  MMETSP1137-20121227|2977_1 202 FSLSAQHGSgtgDLLDRIVsilqERGDLVDKHSEAESDEELEMLISEAEAKLSSA-KQREANVRVMESEFEEEV 274
                 5555555543336777766444479******************************.67799*********9987 PP

>> TIGR02729  Obg_CgtA: Obg family GTPase CgtA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   0.0    0.0017      0.43     162     177 ..      10      25 ..       1      32 [. 0.82
   2 ?    1.1   0.0      0.13        33     230     328 ..     133     223 ..     126     224 .. 0.65
   3 ?   -3.7   0.0         4     1e+03     289     326 ..     437     478 ..     432     480 .. 0.69

  Alignments for each domain:
  == domain 1    score: 7.3 bits;  conditional E-value: 0.0017
   TIGR02729 162 lvGlpnaGkStllsav 177
                 +vG pnaGkStl +++
  MMETSP1137-20121227|2977_1  10 IVGAPNAGKSTLYNRL 25 
                 89**********9876 PP

  == domain 2    score: 1.1 bits;  conditional E-value: 0.13
   TIGR02729 230 LkHiertrvllhlidlseedekdpvedleviekeLkkyseeLaekpelvvlnkidlleeeeleellkelkeelekkvlaisaltkegleellkkllell 328
                 L  i+ ++v+l+++d+++     ++ + e i + L+   ++      l+v+nk+d+      e +++++ +    + +++sa +++g+ +ll++++++l
  MMETSP1137-20121227|2977_1 133 LTAIDDASVILFMVDVNAG----VTVTDEYIARALRPVMRN-GPPAVLLVANKVDTEM---HEYQVHDFWKLGLGEPFSLSAQHGSGTGDLLDRIVSIL 223
                 5566666667777776665....333334455555544332.2234678999*99955...55566666666678889999999999999999998876 PP

  == domain 3    score: -3.7 bits;  conditional E-value: 4
   TIGR02729 289 eeleellkelkeel....ekkvlaisaltkegleellkklle 326
                 ee ++++++++e+l      ++l +sa +++g++e l+ ++e
  MMETSP1137-20121227|2977_1 437 EEYKKIQTDIEERLgslkYAPILYTSAKEGTGIDEALQLVVE 478
                 566666666666665444667888899999999988877765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (597 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       231  (0.056314); expected 82.0 (0.02)
Passed bias filter:                      145  (0.0353486); expected 82.0 (0.02)
Passed Vit filter:                        32  (0.00780107); expected 4.1 (0.001)
Passed Fwd filter:                        16  (0.00390054); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              16  [number of targets reported over threshold]
# CPU time: 0.61u 0.17s 00:00:00.78 Elapsed: 00:00:00.53
# Mc/sec: 1486.75
//
Query:       MMETSP1137-20121227|2978_1  [L=127]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (127 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        98  (0.0238908); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.16s 00:00:00.32 Elapsed: 00:00:00.35
# Mc/sec: 478.93
//
Query:       MMETSP1137-20121227|2980_1  [L=343]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (343 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        65  (0.0158459); expected 82.0 (0.02)
Passed bias filter:                       41  (0.00999512); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.15s 00:00:00.40 Elapsed: 00:00:00.32
# Mc/sec: 1414.76
//
Query:       MMETSP1137-20121227|2981_1  [L=58]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        55  (0.0134081); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.13s 00:00:00.24 Elapsed: 00:00:00.24
# Mc/sec: 318.97
//
Query:       MMETSP1137-20121227|2982_1  [L=204]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (204 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        82  (0.0199902); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.16s 00:00:00.35 Elapsed: 00:00:00.70
# Mc/sec: 384.65
//
Query:       MMETSP1137-20121227|2983_1  [L=130]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (130 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        99  (0.0241346); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.14s 00:00:00.29 Elapsed: 00:00:00.28
# Mc/sec: 612.81
//
Query:       MMETSP1137-20121227|2984_1  [L=328]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (328 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       182  (0.0443686); expected 82.0 (0.02)
Passed bias filter:                      114  (0.0277913); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.15s 00:00:00.43 Elapsed: 00:00:00.31
# Mc/sec: 1396.53
//
Query:       MMETSP1137-20121227|2985_1  [L=385]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   6.4e-126  418.2   0.0   7.6e-126  418.0   0.0    1.0  1  TIGR00092 TIGR00092: GTP-binding protein YchF
      1e-15   55.4   0.2    1.6e-14   51.5   0.2    2.3  1  TIGR02729 Obg_CgtA: Obg family GTPase CgtA
    1.6e-06   25.1   0.0    4.5e-06   23.6   0.0    1.7  2  TIGR03156 GTP_HflX: GTP-binding protein HflX
    5.9e-05   20.4   0.4    0.00016   18.9   0.1    1.9  2  TIGR03596 GTPase_YlqF: ribosome biogenesis GTP-binding protein YlqF
    7.5e-05   19.4   0.0    0.00014   18.5   0.0    1.4  1  TIGR00437 feoB: ferrous iron transport protein B
    0.00012   19.0   0.0    0.00025   18.0   0.0    1.4  1  TIGR03594 GTPase_EngA: ribosome-associated GTPase EngA
    0.00017   19.3   0.0    0.00032   18.4   0.0    1.4  1  TIGR00231 small_GTP: small GTP-binding protein domain
     0.0088   13.3   0.1      0.019   12.2   0.0    1.5  1  TIGR00436 era: GTP-binding protein Era
  ------ inclusion threshold ------
      0.014   12.0   0.0      0.025   11.2   0.0    1.3  1  TIGR03918 GTP_HydF: [FeFe] hydrogenase H-cluster maturation GTPase HydF
      0.026   11.5   0.0      0.055   10.4   0.0    1.5  1  TIGR03597 GTPase_YqeH: ribosome biogenesis GTPase YqeH


Domain annotation for each model (and alignments):
>> TIGR00092  TIGR00092: GTP-binding protein YchF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  418.0   0.0  1.8e-128  7.6e-126       2     368 .]       7     378 ..       6     378 .. 0.96

  Alignments for each domain:
  == domain 1    score: 418.0 bits;  conditional E-value: 1.8e-128
   TIGR00092   2 nlkaGivGLpnvGkstlfqaitkaklgeaanyPfatiepntgvvnvpderldkLaeivksekvvpttlefvDiaGLvkGaskGeGLGnkfLaniRevdaivhvvRcfed....ddivhvegkvdPvrDlevineeLilaDlelvekkiekvkkk.akeg..keakeelellekvleaLengkkvrklk.lneeelkiikslnlLtakPilivanvseddlvnkenkllekvkeivaefkegdkvvlvsaeleselselkeeereeflkelgleevsglnrviraaykllnLisfftaGkkevraWtikkGtkapqaagvihtDlekgfikaevikyedlielkseqeakekGllrleGkdyivkdgDvllfkanv 368
                 n++aG+vG+pnvGkst f+ + ++++  a n+P +ti+p +++v+vpd++  +L+++ k+++ vp+ l++vDiaGLvkGa++GeGLGn+fL++i  +dai hvvR fe+    +   hveg+vdP+rDle+i eeL+l+D++ vek +e +kk+ a++g  ke+k  le+  k+ + L+++kk  +++ ++ +e++i++++nlLtakP+l+++n+se+d+ +k+nk+l k k +++e ++g+++++ sa+le++l  ++  er++fl+e +++    + ++++++y++l L  f+taG +ev+ Wti+ G++ap+aag ihtD+e+gf kaev +y d++e+  e ++ke+G+ r+eGk+y+v+dgD+++fk+nv
  MMETSP1137-20121227|2985_1   7 NVRAGLVGMPNVGKSTTFNMMCNMSV-PAENFPXCTIDPSEARVEVPDPKWRHLCDVWKPKNEVPAFLTVVDIAGLVKGAAEGEGLGNAFLSHINATDAIXHVVRVFEEtadgETAAHVEGEVDPIRDLEIIAEELRLKDVAYVEKIMEPLKKEvARDGkaKEKKDKLEVTLKIYAWLTETKKDVRFGdWSGKEIDILNEYNLLTAKPCLYLVNMSEKDFLRKKNKWLVKLKTWLDENRPGERMIPYSASLEAKLLTMEPAERDAFLAENKITAQ--MGKIVTEGYHALHLHHFYTAGADEVKCWTIRDGWTAPKAAGTIHTDFERGFXKAEVYNYTDFKEYGTEVAVKEAGKYRQEGKNYVVQDGDIIFFKFNV 378
                 689***********************.999*****************************************************************************9743335789*******************************9999873555557899999************9998777766***********************************************************************************998..99**********************************************************************************************96 PP

>> TIGR02729  Obg_CgtA: Obg family GTPase CgtA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.5   0.2   3.9e-17   1.6e-14     160     269 ..      10     146 ..       8     191 .. 0.64

  Alignments for each domain:
  == domain 1    score: 51.5 bits;  conditional E-value: 3.9e-17
   TIGR02729 160 vglvGlpnaGkStllsavsaakpkiadYpFtTlvPnLGvvevee............eks....fvlaDiPgliegasegagLGleFLkHiertrvllhlidlseed..........ek.dpvedleviekeLkkyse 269
                  glvG+pn+GkSt ++ + +      ++p  T+ P+   vev +            +++    ++++Di gl++ga+eg gLG+ FL Hi+ t  + h++ + ee            + dp++dle+i +eL+  + 
  MMETSP1137-20121227|2985_1  10 AGLVGMPNVGKSTTFNMMCNMSVPAENFPXCTIDPSEARVEVPDpkwrhlcdvwkpKNEvpafLTVVDIAGLVKGAAEGEGLGNAFLSHINATDAIXHVVRVFEETadgetaahveGEvDPIRDLEIIAEELRLKDV 146
                 59*********************************99888776533322222222212222326899*********************************8765531111111111223555555666665554333 PP

>> TIGR03156  GTP_HflX: GTP-binding protein HflX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.6   0.0   1.1e-08   4.5e-06     191     241 ..       9      59 ..       3      63 .. 0.89
   2 ?   -2.1   0.0      0.71   2.9e+02     280     340 ..     139     200 ..     129     206 .. 0.66

  Alignments for each domain:
  == domain 1    score: 23.6 bits;  conditional E-value: 1.1e-08
   TIGR03156 191 tvalvGYTNaGKstllnaltkaevlaedklFATLdpttrrlklpeeeevll 241
                 + +lvG  N GKst++n++++ +v ae+    T+dp+  r+++p+ +   l
  MMETSP1137-20121227|2985_1   9 RAGLVGMPNVGKSTTFNMMCNMSVPAENFPXCTIDPSEARVEVPDPKWRHL 59 
                 568***************************************999776555 PP

  == domain 2    score: -2.1 bits;  conditional E-value: 0.71
   TIGR03156 280 deeaeeqieaveevLeelgaeeipvllvlNkidkle.eeeleeleekkeeavlvsAkkgegl 340
                 +e + + ++ ve+++e l+ e ++   +  k dkle + ++ +  +++++ v     +g+++
  MMETSP1137-20121227|2985_1 139 EELRLKDVAYVEKIMEPLKKEVARDGKAKEKKDKLEvTLKIYAWLTETKKDVRFGDWSGKEI 200
                 55566777778888888888877777777777777754555555555555665555555555 PP

>> TIGR03596  GTPase_YlqF: ribosome biogenesis GTP-binding protein YlqF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.1     4e-07   0.00016     117     143 ..       6      32 ..       2      50 .. 0.81
   2 ?   -2.7   0.0       1.6   6.5e+02      45      74 ..     208     237 ..     206     283 .. 0.74

  Alignments for each domain:
  == domain 1    score: 18.9 bits;  conditional E-value: 4e-07
   TIGR03596 117 kairalvvGiPNvGKStliNrlakkkv 143
                 +++ra  vG+PNvGKSt  N +++ +v
  MMETSP1137-20121227|2985_1   6 NNVRAGLVGMPNVGKSTTFNMMCNMSV 32 
                 578999**************9998654 PP

  == domain 2    score: -2.7 bits;  conditional E-value: 1.6
   TIGR03596  45 lvknkprlivlnkaDladpektkkwlkyfe 74 
                 l++ kp+l+++n ++    +k++kwl +++
  MMETSP1137-20121227|2985_1 208 LLTAKPCLYLVNMSEKDFLRKKNKWLVKLK 237
                 567788888888877766667777765544 PP

>> TIGR00437  feoB: ferrous iron transport protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.0   3.5e-07   0.00014       1      40 [.      14      53 ..      14      61 .. 0.93

  Alignments for each domain:
  == domain 1    score: 18.5 bits;  conditional E-value: 3.5e-07
   TIGR00437  1 GnpNvGKstlfnaLtgsnqkvgNwpGvTVekkegklelkg 40
                G pNvGKst fn + +  +   N+p  T++  e+++e+ +
  MMETSP1137-20121227|2985_1 14 GMPNVGKSTTFNMMCNMSVPAENFPXCTIDPSEARVEVPD 53
                78*******************************9998765 PP

>> TIGR03594  GTPase_EngA: ribosome-associated GTPase EngA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.0     6e-07   0.00025       5      46 ..      12      52 ..       7      61 .. 0.75

  Alignments for each domain:
  == domain 1    score: 18.0 bits;  conditional E-value: 6e-07
   TIGR03594  5 ivGrpNVGKStLfNrlvkkrkAivedtpgvTRDrkygeaelk 46
                +vG pNVGKSt fN +++      e++p  T D  ++++e+ 
  MMETSP1137-20121227|2985_1 12 LVGMPNVGKSTTFNMMCNMSVP-AENFPXCTIDPSEARVEVP 52
                7999999999999998876543.5777777777777777665 PP

>> TIGR00231  small_GTP: small GTP-binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.0   7.7e-07   0.00032       4     103 ..       8     120 ..       5     129 .. 0.85

  Alignments for each domain:
  == domain 1    score: 18.4 bits;  conditional E-value: 7.7e-07
   TIGR00231   4 ikivivGhvdvGKstLlnsllknkisiteskpgvtrdyvteqieedGkt...............ykvnllDTaGqedfdairrlyvreverslevvdivilvldveeglekqtke 103
                 ++ ++vG ++vGKst++n +   + ++ e  p  t d  ++ +e+   +               + ++++D+aG ++ +a  +   ++  + +  +d + +v++v e   ++ ++
  MMETSP1137-20121227|2985_1   8 VRAGLVGMPNVGKSTTFNMMCNMS-VPAENFPXCTIDPSEARVEVPDPKwrhlcdvwkpknevpAFLTVVDIAGLVKGAAEGEGLGNAFLSHINATDAIXHVVRVFEET-ADGET 120
                 56799*******************.9999999777776666666655467**************99************999********************99987766.55555 PP

>> TIGR00436  era: GTP-binding protein Era
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.2   0.0   4.6e-05     0.019       2      23 ..       9      30 ..       8      33 .. 0.89

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 4.6e-05
   TIGR00436  2 fvailGrpnvGKSTLlNkllgq 23
                +++++G pnvGKST  N +++ 
  MMETSP1137-20121227|2985_1  9 RAGLVGMPNVGKSTTFNMMCNM 30
                6799**************9985 PP

>> TIGR03918  GTP_HydF: [FeFe] hydrogenase H-cluster maturation GTPase HydF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   6.2e-05     0.025       5      52 ..       5      51 ..       2      54 .. 0.85

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 6.2e-05
   TIGR03918  5 aerlhialfGrrNaGKSsliNaltgqdvaivsdvpGtTtDpvekamEl 52
                ++ ++ +l+G  N+GKS+ +N++++ +v    ++p  T Dp e  +E+
  MMETSP1137-20121227|2985_1  5 GNNVRAGLVGMPNVGKSTTFNMMCNMSVP-AENFPXCTIDPSEARVEV 51
                5778899*****************98776.568899999998888876 PP

>> TIGR03597  GTPase_YqeH: ribosome biogenesis GTPase YqeH
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   0.00013     0.055     159     195 ..      11      41 ..       4      51 .. 0.77

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 0.00013
   TIGR03597 159 yvvGvtNVGKSsliNkllklnkgkkkvittSkfpgTT 195
                  +vG+ NVGKS+  N +++++   ++      fp  T
  MMETSP1137-20121227|2985_1  11 GLVGMPNVGKSTTFNMMCNMSVPAEN------FPXCT 41 
                 589***************98775555......55555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (385 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       162  (0.0394929); expected 82.0 (0.02)
Passed bias filter:                      122  (0.0297416); expected 82.0 (0.02)
Passed Vit filter:                        20  (0.00487567); expected 4.1 (0.001)
Passed Fwd filter:                        10  (0.00243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.36u 0.15s 00:00:00.51 Elapsed: 00:00:00.57
# Mc/sec: 876.13
//
Query:       MMETSP1137-20121227|2986_1  [L=203]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.5e-26   89.6   0.1      4e-26   89.3   0.0    1.1  1  TIGR00691 spoT_relA: RelA/SpoT family protein
  ------ inclusion threshold ------
      0.048   12.6   0.3       0.22   10.5   0.2    1.9  2  TIGR04101 CCGSCS: CCGSCS motif protein


Domain annotation for each model (and alignments):
>> TIGR00691  spoT_relA: RelA/SpoT family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.3   0.0     2e-29     4e-26       1      65 [.     137     201 ..     137     203 .] 0.98

  Alignments for each domain:
  == domain 1    score: 89.3 bits;  conditional E-value: 2e-29
   TIGR00691   1 AlelakklHeeQkRksGePyiiHPlavalllaelglDeetviAaLLHDvvEDTdvteeeieeeFg 65 
                 Al++a+ +H++QkRk GeP+iiHP+ +a +la+l++D  t++A+LLHD+vEDT+ + +++e++Fg
  MMETSP1137-20121227|2986_1 137 ALQVATASHDGQKRKNGEPFIIHPIETAKILADLKMDLDTIVAGLLHDTVEDTPLNLQDVERLFG 201
                 899*************************************************************9 PP

>> TIGR04101  CCGSCS: CCGSCS motif protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.2   0.00011      0.22      25      57 ..      22      54 ..       8      55 .. 0.84
   2 ?   -0.7   0.0      0.34   6.9e+02      35      51 ..     139     155 ..     134     157 .. 0.79

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 0.00011
   TIGR04101 25 aieqaeqseekvaaeieekkkpKHGepGvCCGS 57
                 +e+a++ +++ a+++++  +++HG   +C GS
  MMETSP1137-20121227|2986_1 22 CVESAAALSQESATDAAARPQQRHGHATLCTGS 54
                56888999999*********************9 PP

  == domain 2    score: -0.7 bits;  conditional E-value: 0.34
   TIGR04101  35 kvaaeieekkkpKHGep 51 
                 +va+  +  +k K Gep
  MMETSP1137-20121227|2986_1 139 QVATASHDGQKRKNGEP 155
                 56677778899999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (203 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        88  (0.0214529); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.19u 0.14s 00:00:00.33 Elapsed: 00:00:00.32
# Mc/sec: 837.31
//
Query:       MMETSP1137-20121227|2987_1  [L=323]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        3.5    2.9  18.4        4.5    2.6  12.7    1.1  1  TIGR02169 SMC_prok_A: chromosome segregation protein SMC


Domain annotation for each model (and alignments):
>> TIGR02169  SMC_prok_A: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6  12.7    0.0011       4.5     736     906 ..     110     279 ..      88     282 .. 0.72

  Alignments for each domain:
  == domain 1    score: 2.6 bits;  conditional E-value: 0.0011
   TIGR02169 736 lkerleeleeklseleeeleekkeelkeleaeieeleeklaklkealedleaelseekieeieeelekleeevsriearleeie.aelnklelekelleeeiqelqeeieeleeqkkeiekeieelkakleeleeeleeleaavreLeeelkdLkkereeleaelrelekkk 906
                 + +  ++++++l++ +++l+++k+e+++leae++e +++++  ++ l +le++  ++ +   ++ le+ +++   ++  l+e +  ++++l+++ e +e e +++ e  ++  e+ +e e+  +e+ ++ + +  +   ++a+ +eL ++  + ++ r+ele+ +++++++k
  MMETSP1137-20121227|2987_1 110 KDRGEKDMRKQLEKEQKALAAAKNEVTRLEAELAEAQQQASMENNLLLSLEQQAVNHVVAIADRPLEEYNNVQ-AQDFGLNEQDlIDMDELDVDSETEETEAADEAETGRDDAERSDECEALAAEMVKSCKLFGYNCPIANAKDQELYAQS-KCAETRRELESYVEQIQHAK 279
                 34445899******************************************************99999998755.45555555551456677788888888888888888888888888777777766666655555555555555554443.33444455555555555444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (323 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       325  (0.0792296); expected 82.0 (0.02)
Passed bias filter:                      156  (0.0380302); expected 82.0 (0.02)
Passed Vit filter:                        22  (0.00536324); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.19s 00:00:00.55 Elapsed: 00:00:00.42
# Mc/sec: 1015.06
//
Query:       MMETSP1137-20121227|2988_1  [L=56]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        72  (0.0175524); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.14s 00:00:00.26 Elapsed: 00:00:00.28
# Mc/sec: 254.88
//
Query:       MMETSP1137-20121227|2990_1  [L=99]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (99 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        87  (0.0212092); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.13s 00:00:00.27 Elapsed: 00:00:00.36
# Mc/sec: 362.97
//
Query:       MMETSP1137-20121227|2991_1  [L=345]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (345 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        58  (0.0141394); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.14s 00:00:00.42 Elapsed: 00:00:00.57
# Mc/sec: 785.11
//
Query:       MMETSP1137-20121227|2992_1  [L=361]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (361 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       185  (0.0451); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.11s 00:00:00.38 Elapsed: 00:00:00.95
# Mc/sec: 501.56
//
Query:       MMETSP1137-20121227|2993_1  [L=381]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (381 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        77  (0.0187713); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.12s 00:00:00.38 Elapsed: 00:00:00.85
# Mc/sec: 591.62
//
Query:       MMETSP1137-20121227|2994_1  [L=370]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (370 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        45  (0.0109703); expected 82.0 (0.02)
Passed bias filter:                       44  (0.0107265); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.15s 00:00:00.41 Elapsed: 00:00:00.40
# Mc/sec: 1220.90
//
Query:       MMETSP1137-20121227|2995_1  [L=300]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (300 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        94  (0.0229157); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.18s 00:00:00.40 Elapsed: 00:00:00.71
# Mc/sec: 557.70
//
Query:       MMETSP1137-20121227|2996_1  [L=257]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0085   11.6  32.4       0.01   11.3  22.5    1.0  1  TIGR02169 SMC_prok_A: chromosome segregation protein SMC
  ------ inclusion threshold ------
      0.034    9.6  40.0      0.041    9.4  27.7    1.1  1  TIGR02168 SMC_prok_B: chromosome segregation protein SMC
        7.8    2.6  23.8        0.1    8.8   2.5    2.2  2  TIGR03185 DNA_S_dndD: DNA sulfur modification protein DndD


Domain annotation for each model (and alignments):
>> TIGR02169  SMC_prok_A: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.3  22.5   7.5e-06      0.01     263     510 ..       4     252 ..       2     257 .] 0.88

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 7.5e-06
   TIGR02169 263 elekeleeiekkleelnkkieklg.eeeqlavkekleelkaeiekleraiaekeeeledaeerlakaeaeidklkeeieelereieeekkereklkeelkelkeeleelraeleevdkeaaelreelkelkekleklkeelnelkreldrlleelkr..leeelaelkaelerieekiaeleeeleelaeeikkaeqkleqlkedlekaekelrklkeeleklekelselerelaeleaqakaseeesres 510
                 ++++e++ ++k+l+el+k++++   e++ +++ + ++ ++ e+e+l +   ++ee+ e+++ +     a +++ ++  e+ + + e+e+   +++ ++++++++el++  a  +  + + a   +e ++++   + l+ +l+e +rel+ l     +  ++++ +e+ ae+ ++++++ e  +e++e+++ + +a  ++ +l e + kae+   + ++  ++   +  e+e e  +l+ qa+a+++e  e 
  MMETSP1137-20121227|2996_1   4 QQREESAVRRKELAELSKRLKSSDdEGRLAQLNKIMRAFQKEVERLTARAVAAEEQCEQLASEGGSGPA-REASRASGEATNAATESERHVADAVADAVAAARAELQAAGASDDTSACTLASGTHEGENAESDANLLRAKLQEARRELELLASSRAEfaRSADASEVAAEVLALRAELVEAVKERQEARADVVAAHAEVGTLTEARRKAEAACAEATAAADESRAREAEAEAEAIALREQAEAAQREA-EA 252
                 5678889999**********98651567899*****************************999887765.56667777888888899999999*************999999999999999999999999999999*********9999998776652257788999999****************************************************99999999999999999999998887.33 PP

>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4  27.7     3e-05     0.041     692     929 ..       6     253 ..       1     257 [] 0.52

  Alignments for each domain:
  == domain 1    score: 9.4 bits;  conditional E-value: 3e-05
   TIGR02168 692 eekiaelekelkelekeleeleee..leklrkeleelerklselkkelerlekeveqleer.....laqlekeleeleeereeleeeleeaeeel.keaeeeieeleaeieqlkeelkalrealseleaeltelkeeaaekeerleslekeiaalekeleeleeqieel..eeeiesleaeieeleeeleeleeeleellkekasleealaelreeleelseelrelekkvkelereleelreklaql 929
                  e+ a  +kel+el+k+l++ ++e  l++l+k  +  ++++++l +++ ++e+++eql+++     +++++++  e+++  +e e+++++a + + ++a++e+++  a+ ++    l++ + + +++e++++ l+++++e++++le l +  a+ +++++  e ++e l  ++e+ ++ +e +e++++  ++++e+  l+++++++e+a ae+ ++ +e +++  e+e ++ +l++++e+++ + +++
  MMETSP1137-20121227|2996_1   6 REESAVRRKELAELSKRLKSSDDEgrLAQLNKIMRAFQKEVERLTARAVAAEEQCEQLASEggsgpAREASRASGEATNAATESERHVADAVADAvAAARAELQAAGASDDTSACTLASGTHEGENAESDANLLRAKLQEARRELELLASSRAEFARSADASEVAAEVLalRAELVEAVKERQEARADVVAAHAEVGTLTEARRKAEAACAEATAAADESRAREAEAEAEAIALREQAEAAQREAEAA 253
                 33444444555555554443333211445555555556666666666666666666665542222234444444455444444444444443333255555555555555666666666666666666777777777777777777766666666666555444444430033444444444444445556666666666666666666666666666666666666666666666666666665554 PP

>> TIGR03185  DNA_S_dndD: DNA sulfur modification protein DndD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   2.5   7.4e-05       0.1     399     482 ..       8      93 ..       3     113 .. 0.75
   2 ?   -0.3   8.1     0.043        59     200     288 ..     162     250 ..     138     256 .. 0.71

  Alignments for each domain:
  == domain 1    score: 8.8 bits;  conditional E-value: 7.4e-05
   TIGR03185 399 eleeleeelaeldkkietvpdeekvaelleeleeaeeevakseveieektekleelkeaiee..lrkelkektkqkedaeelervi 482
                 e++   +elael k++++ +de ++a+l + ++  ++ev ++ +    ++e+ e+l+ +  +  +r++ ++  + ++ a+e er +
  MMETSP1137-20121227|2996_1   8 ESAVRRKELAELSKRLKSSDDEGRLAQLNKIMRAFQKEVERLTARAVAAEEQCEQLASEGGSgpAREASRASGEATNAATESERHV 93 
                 45556799************************************999999999996555332114555455555555555555544 PP

  == domain 2    score: -0.3 bits;  conditional E-value: 0.043
   TIGR03185 200 keeleseieseiealeaelkeqeekievlaqeiaalrkeleeaerkleslekkfeseGgelaeereelerqqkeleaklkavraelrel 288
                 ++   se+ +e+ al ael e +++++ +++++ a++ e+  + +  +++e + +++ +++ e r++  + ++e+ a +++++a  re+
  MMETSP1137-20121227|2996_1 162 RSADASEVAAEVLALRAELVEAVKERQEARADVVAAHAEVGTLTEARRKAEAACAEATAAADESRAREAEAEAEAIALREQAEAAQREA 250
                 45556778899999999999999999999999999999999888888888888888888888777766666665555555555544444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (257 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       440  (0.107265); expected 82.0 (0.02)
Passed bias filter:                      100  (0.0243784); expected 82.0 (0.02)
Passed Vit filter:                        19  (0.00463189); expected 4.1 (0.001)
Passed Fwd filter:                         8  (0.00195027); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.45u 0.17s 00:00:00.62 Elapsed: 00:00:01.00
# Mc/sec: 339.21
//
Query:       MMETSP1137-20121227|2997_1  [L=35]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (35 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        52  (0.0126767); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.18s 00:00:00.28 Elapsed: 00:00:00.42
# Mc/sec: 109.99
//
Query:       MMETSP1137-20121227|2998_1  [L=157]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (157 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        79  (0.0192589); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.13s 00:00:00.30 Elapsed: 00:00:00.59
# Mc/sec: 351.23
//
Query:       MMETSP1137-20121227|2999_1  [L=133]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (133 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        54  (0.0131643); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.15s 00:00:00.31 Elapsed: 00:00:00.30
# Mc/sec: 585.15
//
Query:       MMETSP1137-20121227|3000_1  [L=110]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (110 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        41  (0.00999512); expected 82.0 (0.02)
Passed bias filter:                       41  (0.00999512); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.09s 00:00:00.23 Elapsed: 00:00:00.32
# Mc/sec: 453.71
//
Query:       MMETSP1137-20121227|3001_1  [L=121]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (121 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        81  (0.0197465); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.14s 00:00:00.30 Elapsed: 00:00:00.38
# Mc/sec: 420.28
//
Query:       MMETSP1137-20121227|3002_1  [L=1161]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1161 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       102  (0.0248659); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.62u 0.15s 00:00:00.77 Elapsed: 00:00:01.07
# Mc/sec: 1432.14
//
Query:       MMETSP1137-20121227|3003_1  [L=257]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.045   10.6   0.0      0.055   10.3   0.0    1.1  1  TIGR01175 pilM: type IV pilus assembly protein PilM


Domain annotation for each model (and alignments):
>> TIGR01175  pilM: type IV pilus assembly protein PilM
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   1.3e-05     0.055     164     228 ..     144     210 ..     100     228 .. 0.80

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 1.3e-05
   TIGR01175 164 vesfallralrllaeqLakstsretaallvdIgatsstlnlvvdgril..ftrevllgtrqlteels 228
                 ++++ l r+  + +  L  +++++t  ++v+Ig+  + +  vv g+i+    r+v +g+  lt+  s
  MMETSP1137-20121227|3003_1 144 LQAYKLHRLCIVDSASLCLFANKRTSGVVVNIGFALTFVVPVVRGHIVrrAVRTVRIGGAALTQFYS 210
                 6889999998888999*********************988777777642278*******98886444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (257 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       116  (0.0282789); expected 82.0 (0.02)
Passed bias filter:                      104  (0.0253535); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.23u 0.15s 00:00:00.38 Elapsed: 00:00:00.42
# Mc/sec: 807.65
//
Query:       MMETSP1137-20121227|3004_1  [L=105]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (105 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        19  (0.00463189); expected 82.0 (0.02)
Passed bias filter:                       18  (0.0043881); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.13s 00:00:00.26 Elapsed: 00:00:00.27
# Mc/sec: 513.29
//
Query:       MMETSP1137-20121227|3006_1  [L=527]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (527 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       132  (0.0321794); expected 82.0 (0.02)
Passed bias filter:                       99  (0.0241346); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.15s 00:00:00.51 Elapsed: 00:00:00.51
# Mc/sec: 1363.89
//
Query:       MMETSP1137-20121227|3007_1  [L=593]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   1.3e-183  608.8   5.0   3.7e-180  597.4   1.0    2.0  2  TIGR00973 leuA_bact: 2-isopropylmalate synthase
     3e-112  373.1   0.9   3.9e-112  372.8   0.6    1.1  1  TIGR02090 LEU1_arch: isopropylmalate/citramalate/homocitrate synthases
    1.2e-87  292.5   2.8    1.5e-87  292.1   1.9    1.1  1  TIGR02660 nifV_homocitr: homocitrate synthase
    1.2e-75  252.8   0.3    1.5e-75  252.4   0.2    1.1  1  TIGR02146 LysS_fung_arch: homocitrate synthase
    1.8e-57  192.6   0.4    2.5e-57  192.2   0.3    1.2  1  TIGR00977 LeuA_rel: 2-isopropylmalate synthase/homocitrate synthase family protein
    1.5e-40  137.1   6.5    8.6e-39  131.3   4.5    2.1  1  TIGR00970 leuA_yeast: 2-isopropylmalate synthase
    1.4e-18   65.0   0.0    2.1e-14   51.3   0.0    2.3  2  TIGR03217 4OH_2_O_val_ald: 4-hydroxy-2-oxovalerate aldolase
    4.1e-06   23.3   0.0      6e-05   19.5   0.0    2.1  2  TIGR01108 oadA: oxaloacetate decarboxylase alpha subunit
    6.9e-06   21.6   0.2    0.00011   17.7   0.0    2.0  2  TIGR01235 pyruv_carbox: pyruvate carboxylase


Domain annotation for each model (and alignments):
>> TIGR00973  leuA_bact: 2-isopropylmalate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  597.4   1.0  8.2e-183  3.7e-180       1     461 [.      30     508 ..      30     526 .. 0.94
   2 !   13.1   0.1   1.2e-05    0.0054     470     494 .]     556     580 ..     540     580 .. 0.85

  Alignments for each domain:
  == domain 1    score: 597.4 bits;  conditional E-value: 8.2e-183
   TIGR00973   1 rvlifdttlrdGeqapgasltveeklqiakalerlgvdiieaGfpvsskgdfeavqkiarevknar..........vvglaravekdidaaaealkpaekkrihtfiatsdihleaklkktkdevlerivkavkyaknfvddvefsaedagrteleflarvveaaieaGattiniPdtvGyalPaeygelikelkenvPnidkailsvhchddlGlavanslaavknGarqvectinGiGeraGnaaleevvmalkvrkdflnvetgintkeiyrtsrlvskltgmlvqrnkaivGdnafahesGihqdGvlknketyeilspesiGlkkeklvlgkrsGraalkkrleelGfk...ldeeeldklfekfkeladkkkevfdedlealvleelrqeeeeklkleklqvqs.....geesvptatvklkvk.geekeaaatGnGpvdavykaiekilelevklleysitakgegkdalgev 461
                 r++ifdttlrdGeq+pga+lt  ek++iak+l rlgvd+ eaGfp++s+gdf+av ++a++  + +          ++glara +kd++  ++a+k a  +rihtf+a+sdihle+kl  ++++ +e+  ++v++ak +vdd+efs+edagr++ +fla++ +a+ieaGattin+PdtvGy+lP+ey+ ++++l ++ Pn dk++ s hch+dlGla+anslaavk Garqve+t+n +GeraGn++leevvmal++r   ++v+  i+t++i+rtsr+v+  tg++vq+nkaivG+nafahesGihq+G+lk+ +tyei++pes+G + ++lvlgk+sG+aa k rl elG+     dee+l k+ e  k +ad+kk + d dle lv ++l ++e++ + le+l+vqs     g++  +tatvkl+   gee ++aa+G Gpvda++kai +i++ +vkl++ys+t  + g++a g+ 
  MMETSP1137-20121227|3007_1  30 RLIIFDTTLRDGEQSPGATLTESEKVDIAKQLSRLGVDVCEAGFPIASQGDFDAVTQVAKTAGHMTegrhngvpmrIAGLARAHKKDLERCYNAVKHAPLHRIHTFLASSDIHLEHKLGISRQKCIEISSSMVAFAKTMVDDIEFSPEDAGRSDPAFLAELCQAVIEAGATTINLPDTVGYTLPHEYSGMFEYLIKTTPNSDKIVWSTHCHNDLGLATANSLAAVKSGARQVEVTLNSLGERAGNTSLEEVVMALHTRPHHFPVHCFIDTRQIMRTSRMVATYTGIAVQPNKAIVGANAFAHESGIHQHGMLKHANTYEIMTPESVGAD-SELVLGKHSGKAAYKARLIELGYAdvaNDEEKLSKVVEGAKAVADQKKVLSDMDLEVLVGDKLYHQERQFWALESLSVQSnssddGSKVASTATVKLRELnGEEVSEAAIGIGPVDATFKAILRIVNRPVKLSQYSVTKISGGTNAPGND 508
                 689*********************************************************9987766777888889***********************************************************************************************************************************************************************************************************************************************************87.579*******************9633368999***********************************999********9833333556789******8764899**********************************888777776542 PP

  == domain 2    score: 13.1 bits;  conditional E-value: 1.2e-05
   TIGR00973 470 kkysGrgvatdiveasakayvnaln 494
                  ++sG+g +tdi+ asakay+ a+n
  MMETSP1137-20121227|3007_1 556 PTFSGTGSSTDIIVASAKAYLGAIN 580
                 5799********************9 PP

>> TIGR02090  LEU1_arch: isopropylmalate/citramalate/homocitrate synthases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  372.8   0.6  8.6e-115  3.9e-112       3     362 ..      33     416 ..      31     417 .. 0.91

  Alignments for each domain:
  == domain 1    score: 372.8 bits;  conditional E-value: 8.6e-115
   TIGR02090   3 ifdttlrdGeqtPGvsltveqkveiakkldelGvdvieaGfaiasegeaeaikkiae..........eglnaeilslaralkkdidkaid....cgvdsihlviatsdlhlkyklkkskdevlekaveaveyakehGlivefsaedatrtdidflikvfkkaeeagadrinvadtvGvltPek....meelikklkekvklpvsvhchndfGlavansiagvlaGaeqvhvtvnGlGeraGnaaleevvialkv...lygvdvkikteklyevsrlvsklskvkvpknkaivGenafahesGihvdavienaltyePisPekvGkkrkiilGkhsGrkaveaklkelGie...vdkeqlkeilkrikelgdkGkkvtdedvkei 362
                 ifdttlrdGeq+PG +lt+ +kv+iak+l  lGvdv eaGf+ias+g+++a+ ++a+          +g+   i +lara+kkd++++ +    + +++ih+++a+sd+hl+ kl  s+++ +e++   v +ak     +efs+eda r+d  fl ++ ++ +eaga  in++dtvG   P++    +e+lik+  ++ k+  s hchnd+Gla+ans+a+v++Ga+qv+vt+n lGeraGn++leevv+al++    + v+  i+t+++  +sr+v  ++++ v++nkaivG nafahesGih ++++++a+tye ++Pe vG   +++lGkhsG++a +a+l elG+     d+e+l+++++  k+++d+ k ++d d++ +
  MMETSP1137-20121227|3007_1  33 IFDTTLRDGEQSPGATLTESEKVDIAKQLSRLGVDVCEAGFPIASQGDFDAVTQVAKtaghmtegrhNGVPMRIAGLARAHKKDLERCYNavkhAPLHRIHTFLASSDIHLEHKLGISRQKCIEISSSMVAFAKTMVDDIEFSPEDAGRSDPAFLAELCQAVIEAGATTINLPDTVGYTLPHEysgmFEYLIKTTPNSDKIVWSTHCHNDLGLATANSLAAVKSGARQVEVTLNSLGERAGNTSLEEVVMALHTrphHFPVHCFIDTRQIMRTSRMVATYTGIAVQPNKAIVGANAFAHESGIHQHGMLKHANTYEIMTPESVGADSELVLGKHSGKAAYKARLIELGYAdvaNDEEKLSKVVEGAKAVADQKKVLSDMDLEVL 416
                 9***************************************************9998722222222112445679***********9765511126789***********************************************************************************9733335778888888889999*************************************************963336899***************************************************************************************8622145899********************999866 PP

>> TIGR02660  nifV_homocitr: homocitrate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  292.1   1.9   3.3e-90   1.5e-87       2     362 ..      31     414 ..      30     417 .. 0.88

  Alignments for each domain:
  == domain 1    score: 292.1 bits;  conditional E-value: 3.3e-90
   TIGR02660   2 vlinDttLRDGEqaagvaFsaeEKlaiAkaLdeaGvdelEvGipamgeeEraairaiaal..........glkarllaWcRlraedieaa....aevGvkavdlsvpvsdlqleaklkkdrawvleelkelvslakeeglkvsvgaeDasRadeeflvelaevakeagakRlRfaDtvgvldPfstyelvkalraal....elelElHaHnDlGlAtAntlaavkaGassvsvtvlGlGERAGnAaleevalalke...llgldtgidlselkelsqlvakasgraleaqkavvGesvFaHEsGiHvdgllkdeatYesldPeevGrerelviGKHsgraaviealkelgle...leeeeaeelleavravaerlKrsleeeela 362
                 ++i DttLRDGEq++g   +++EK+ iAk L+++Gvd  E+G p  ++ + +a++++a++          g ++r+   +R++++d+e      +++ +++++  ++ sd++le+kl  +r++ +e  +++v +ak++  ++    eDa R+d++fl+el + + eaga+ + + Dtvg   P +   ++++l +++    ++ +  H+HnDlGlAtAn+laavk+Ga+ v+vt + lGERAGn +leev++al++    + +++ id++++ + s++va+ +g a++++ka+vG++ FaHEsGiH +g+lk+++tYe ++Pe vG++ elv+GKHsg+aa +++l elg++    +ee++++++e  +ava++ K+ l++ +l+
  MMETSP1137-20121227|3007_1  31 LIIFDTTLRDGEQSPGATLTESEKVDIAKQLSRLGVDVCEAGFPIASQGDFDAVTQVAKTaghmtegrhnGVPMRIAGLARAHKKDLERCynavKHAPLHRIHTFLASSDIHLEHKLGISRQKCIEISSSMVAFAKTMVDDIEFSPEDAGRSDPAFLAELCQAVIEAGATTINLPDTVGYTLPHEYSGMFEYLIKTTpnsdKIVWSTHCHNDLGLATANSLAAVKSGARQVEVTLNSLGERAGNTSLEEVVMALHTrphHFPVHCFIDTRQIMRTSRMVATYTGIAVQPNKAIVGANAFAHESGIHQHGMLKHANTYEIMTPESVGADSELVLGKHSGKAAYKARLIELGYAdvaNDEEKLSKVVEGAKAVADQ-KKVLSDMDLE 414
                 6899************************************************999998762222221111456789999********8651111567899*************************************************************************************9999999988764333678999***********************************************862114557889********************************************************************************9999752214566677777777777765.6677777776 PP

>> TIGR02146  LysS_fung_arch: homocitrate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  252.4   0.2   3.3e-78   1.5e-75       1     343 [.      33     399 ..      33     400 .. 0.92

  Alignments for each domain:
  == domain 1    score: 252.4 bits;  conditional E-value: 3.3e-78
   TIGR02146   1 ilDstLreGeqtpgvvfstekrveiakaLddiGvdyievgsPavsedirkdikkiaklk..........lkakivthsravlddie...vave.levdridvlfgvsklllkkkhrkdleeileeiaevieyvkskgvevrftaeDtsrsdledLlkvvktakeagvdrvsiaDtvGvatPrrvyelvrkvkrvvp...gvdieihahnDlGlavanalaaiegGatvvdttvnGlGeraGivpLqvllaalyy...hagvkv.ykLeklkeierlveeavgieippnypivGenafthkaGlhvkavlknPetyeilppevfGrkrklvidrltGkkaikarlekLg...lklseeevkkvlkkik 343
                 i+D+tLr+Geq pg++ ++ ++v+iak L+ +Gvd+ e+g P +s+  + ++ ++ak            +  +i +  ra+++d+e   +av+ +  +ri  +++ s+++l++k  +++++ +e+ + +++++k    ++ f++eD+ rsd   L ++++++ eag+  + + DtvG + P++   +++ + ++ p   ++    h+hnDlGla an+laa+ +Ga+ v++t+n lGeraG + L+ ++ al +   h++v+  +   ++   +r+v++++gi+++pn  ivG naf+h +G+h++++lk  +tyei+ pe +G + +lv+ +++Gk a karl +Lg   +   ee+++kv++  k
  MMETSP1137-20121227|3007_1  33 IFDTTLRDGEQSPGATLTESEKVDIAKQLSRLGVDVCEAGFPIASQGDFDAVTQVAKTAghmtegrhngVPMRIAGLARAHKKDLErcyNAVKhAPLHRIHTFLASSDIHLEHKLGISRQKCIEISSSMVAFAKTMVDDIEFSPEDAGRSDPAFLAELCQAVIEAGATTINLPDTVGYTLPHEYSGMFEYLIKTTPnsdKIVWSTHCHNDLGLATANSLAAVKSGARQVEVTLNSLGERAGNTSLEEVVMALHTrphHFPVHCfIDTRQIMRTSRMVATYTGIAVQPNKAIVGANAFAHESGIHQHGMLKHANTYEIMTPESVGADSELVLGKHSGKAAYKARLIELGyadVANDEEKLSKVVEGAK 399
                 78******************************************************9988999999999999************98333345415679*************************************************************************************9999999988886222466799*****************************************9999998644488998889999*******************************************************************************94334556888888887655 PP

>> TIGR00977  LeuA_rel: 2-isopropylmalate synthase/homocitrate synthase family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  192.2   0.3   5.6e-60   2.5e-57       2     450 ..      31     485 ..      30     508 .. 0.87

  Alignments for each domain:
  == domain 1    score: 192.2 bits;  conditional E-value: 5.6e-60
   TIGR00977   2 lklydttlrdGaqaeGvslsledkiriaeklddlGihyieGGwpganpkdvaffekvkeenlknak.....v.vafsstrrpdkkveedkqlqalikaetpvvtifGkswdlhveealkttleenlkmiydtveylkrfadeviydaehffdGykanpeyalktlkvaekaGadwlvladtnGGtlpheieeitkkvkkrl...kdpqlGihahndsetavansllaveaGavqvqGtinGlGercGnanlcslipnlqlk.lgldviekenlkkltevarlvaeivnlaldenmpyvGesafahkGGvhvsavkrnpktyehidpelvGnkrkivvselaGksnvleklkelGie.idekspkvrkilkkikelekqGyhfeaaeaslellvrdalGkr.kkyfevdgfrvliakrrdeeslseaeatvrvsv.egaeeltaaeGnGpvsaldralrkale 450
                 l ++dttlrdG q  G +l+  +k+ ia++l  lG++  e G+p a   d    ++v +   + ++     v + ++   r +kk + ++  +a+ +a  + +  f  s d+h+e+ l  + ++ +++ +  v++ k ++d++ +  e   d  +++p +  +  ++  +aGa  + l dt G tlphe + + + + k+     +     h hnd + a ansl+av++Ga+qv+ t+n lGer+Gn+ l  ++  l  +   + v    + ++++ ++r+va  +++a + n   vG  afah  G+h   + ++++tye + pe vG   ++v+ + +Gk+    +l elG++ + +++ k+ k+++  k + +q   +  ++  le+lv d+l ++ ++++ +++  v+ +   d+ s   ++atv++ + +g e+ +aa G Gpv+a  +a+ + ++
  MMETSP1137-20121227|3007_1  31 LIIFDTTLRDGEQSPGATLTESEKVDIAKQLSRLGVDVCEAGFPIASQGDFDAVTQVAKTAGHMTEgrhngVpMRIAGLARAHKK-DLERCYNAVKHAPLHRIHTFLASSDIHLEHKLGISRQKCIEISSSMVAFAKTMVDDIEFSPE---DAGRSDPAFLAELCQAVIEAGATTINLPDTVGYTLPHEYSGMFEYLIKTTpnsDKIVWSTHCHNDLGLATANSLAAVKSGARQVEVTLNSLGERAGNTSLEEVVMALHTRpHHFPVHCFIDTRQIMRTSRMVATYTGIAVQPNKAIVGANAFAHESGIHQHGMLKHANTYEIMTPESVGADSELVLGKHSGKAAYKARLIELGYAdVANDEEKLSKVVEGAKAVADQKKVL--SDMDLEVLVGDKLYHQeRQFWALESLSVQSNSS-DDGSKVASTATVKLRElNGEEVSEAAIGIGPVDATFKAILRIVN 485
                 689***********************************************99999887765333321111121334455566655.44567789999999999999****************************************99...899************************************999998777763323333578***********************************************988356888888999*********************************************************************************853899999************9998766..5788*****999876516677888998887655.55599999*****97439999*************9999877665 PP

>> TIGR00970  leuA_yeast: 2-isopropylmalate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  131.3   4.5   1.9e-41   8.6e-39      31     563 ..      35     583 ..       5     584 .. 0.84

  Alignments for each domain:
  == domain 1    score: 131.3 bits;  conditional E-value: 1.9e-41
   TIGR00970  31 svdlrdGnqalidpmsverkkryfkllvriGfkeievgfpsasqtdfdfvreiieqg.lipdd......vtiqvltqsreelikrtvealsGakkaivhlynatsdlfrevvfrasreevlalavegsklvrklvkdaaksketrwsfeyspesfsdtelefavevceavkeviepteerpiifnlpatvevatpnvyadsieylstniaerekvilslhphndrGtavaaaelGllaGadrieGclfGnGertGnvdlvtlalnlytqG....vspnldfsdldeilrvvercnkipvherhpygGdlvvtafsGshqdaikkGldaldkkkaaadtlwkvpylpldpkdvgreyeavirvnsqsGkGGvayvl.ktdlGldlprrlqiefssvvkdiad..skGkelsskeisdlfkeeyllnveqlerisl..vdyaveddGteskvitavvki...kgekkdieGsGnGplsalvdaladllnvdvavadysehalgsGddakaa.syvelsvrrasdaeka................................tvwGvGiaedvtsaslravlsavnraa 563
                  + lrdG+q+    ++  +k  + k+l r+G    e gfp asq dfd v ++ +++  + +       + i  l+++ ++ ++r  +a++ a+   +h+++a+sd++ e  +  sr+++++++     +++ +v+d           e+spe    +++ f  e+c+av e+ + t       nlp tv  + p  y+   eyl +   + +k++ s+h+hnd G a a +   + +Ga ++e  l   Ger+Gn +l  + + l+t+     v   +d  ++    r+v +   i v++ +   G   ++  sG hq  + k  +                y  + p+ vg + e v+     sGk   ay   + +lG     + + ++s+vv+       + k ls  ++  l  ++ + +++q+ +++   v+ + +ddG  + + ta+vk+   +ge++     G Gp+ a  +a+ +++n  v++++ys   ++ G +a    +   ++++++sd+                                   t+ G G ++d+  as +a l a+nr++
  MMETSP1137-20121227|3007_1  35 DTTLRDGEQSPGATLTESEKVDIAKQLSRLGVDVCEAGFPIASQGDFDAVTQVAKTAgHMTEGrhngvpMRIAGLARAHKKDLERCYNAVKHAPLHRIHTFLASSDIHLEHKLGISRQKCIEISSSMVAFAKTMVDD----------IEFSPEDAGRSDPAFLAELCQAVIEAGATT------INLPDTVGYTLPHEYSGMFEYLIKTTPNSDKIVWSTHCHNDLGLATANSLAAVKSGARQVEVTLNSLGERAGNTSLEEVVMALHTRPhhfpVHCFIDTRQIMRTSRMVATYTGIAVQPNKAIVGANAFAHESGIHQHGMLKHANT---------------YEIMTPESVGADSELVLG--KHSGKA--AYKArLIELGYADVANDEEKLSKVVEGAKAvaDQKKVLSDMDLEVLVGDKLYHQERQFWALESlsVQSNSSDDG-SKVASTATVKLrelNGEEVSEAAIGIGPVDATFKAILRIVNRPVKLSQYSVTKISGGTNAPGNdALASIVLQITSDSSFEevpadfpakssgiyfaegnelgvvksaanatpTFSGTGSSTDIIVASAKAYLGAINRMI 583
                 578***********************************************9998876444332122222568889999999***************************************99988776665555554..........79*********************8876654......7************************************************99**********************************963333777888888888889999999************************887654433...............555889********9975..567775..55431457888888888889999998654432455677888888888888888888876664311344556666.555668888762226777778899********************************9987543145556666666655445689****************************************************986 PP

>> TIGR03217  4OH_2_O_val_ald: 4-hydroxy-2-oxovalerate aldolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.4   0.0     6e-05     0.028       2      43 ..      30      71 ..      29      84 .. 0.92
   2 !   51.3   0.0   4.6e-17   2.1e-14     139     242 ..     181     286 ..     149     312 .. 0.86

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 6e-05
   TIGR03217  2 kltitdvtLrdGshavrhqftaeevraiaaaLdeagvdaiev 43
                +l+i d+tLrdG ++    +t+ e ++ia+ L + gvd+ e 
  MMETSP1137-20121227|3007_1 30 RLIIFDTTLRDGEQSPGATLTESEKVDIAKQLSRLGVDVCEA 71
                6889**********************************9886 PP

  == domain 2    score: 51.3 bits;  conditional E-value: 4.6e-17
   TIGR03217 139 maspeklaeqakllesyGadvvyvvdsaGallpedvkdrvkalkeal..kpetevGlhahenlslavansivaveeGatridaslaglGagaGnaplevlvavldr 242
                   +p  lae  + + + Ga+++++ d+ G+ lp++ +  ++ l ++   ++++    h h++l+la ans++av+ Ga++++ +l++lG  aGn+ le +v +l+ 
  MMETSP1137-20121227|3007_1 181 RSDPAFLAELCQAVIEAGATTINLPDTVGYTLPHEYSGMFEYLIKTTpnSDKIVWSTHCHNDLGLATANSLAAVKSGARQVEVTLNSLGERAGNTSLEEVVMALHT 286
                 56889999*9999***************************99877762245677899****************************************998877654 PP

>> TIGR01108  oadA: oxaloacetate decarboxylase alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.0      0.04        18       1      38 [.      33      69 ..      33      83 .. 0.83
   2 !   19.5   0.0   1.3e-07     6e-05     153     270 ..     189     308 ..     185     324 .. 0.81

  Alignments for each domain:
  == domain 1    score: 1.4 bits;  conditional E-value: 0.04
   TIGR01108  1 itdvvlrdahqsllatrlrteDmLpileklDkvgywsl 38
                i d++lrd+ qs  at l+  + ++i+++l ++g    
  MMETSP1137-20121227|3007_1 33 IFDTTLRDGEQSPGAT-LTESEKVDIAKQLSRLGVDVC 69
                56999*******9999.566667899999999887655 PP

  == domain 2    score: 19.5 bits;  conditional E-value: 1.3e-07
   TIGR01108 153 elakellelgvDsiaikDmaGlLtPkaayeLvsalkkeve....lpvelhshattglaelallkaieaGvdviDtaisslsagtshpatealvaalretgydtgldiellkeiadyfrevrk 270
                 el + ++e g+ +i + D  G   P+    +++ l k+++    +    h+h   gla++  l+a+++G+ +++ ++ sl   +++++ e +v+al+  ++     ++ + + ++++r  r+
  MMETSP1137-20121227|3007_1 189 ELCQAVIEAGATTINLPDTVGYTLPHEYSGMFEYLIKTTPnsdkIVWSTHCHNDLGLATANSLAAVKSGARQVEVTLNSLGERAGNTSLEEVVMALHTRPHHF--PVHCFIDTRQIMRTSRM 308
                 788899999999*********9999987666665544443222377899***********************************************9887754..56666666666666665 PP

>> TIGR01235  pyruv_carbox: pyruvate carboxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.0     0.015       6.7     523     553 ..      23      53 ..      12      67 .. 0.78
   2 !   17.7   0.0   2.3e-07   0.00011     687     788 ..     183     288 ..     156     313 .. 0.83

  Alignments for each domain:
  == domain 1    score: 1.8 bits;  conditional E-value: 0.015
   TIGR01235 523 kavreqksvlltdttfrdahqsllatrvrth 553
                 +a  +++++++ dtt+rd+ qs  at   + 
  MMETSP1137-20121227|3007_1  23 EAAPATERLIIFDTTLRDGEQSPGATLTESE 53 
                 5556778999************999876554 PP

  == domain 2    score: 17.7 bits;  conditional E-value: 2.3e-07
   TIGR01235 687 dlkyytelaeelekaGahilaikdmaGllkPaaak....lliaalrektdlPihlhthdtsGaavasvlaaveaGvdvvdvavdslsGltsqPslgalvaaleGse 788
                 d ++  el + + +aGa  + + d  G   P         li++  ++  +    h h+  G a a  laav++G+  v+v+++sl   + + sl+ +v al+  +
  MMETSP1137-20121227|3007_1 183 DPAFLAELCQAVIEAGATTINLPDTVGYTLPHEYSgmfeYLIKTTPNSDKIVWSTHCHNDLGLATANSLAAVKSGARQVEVTLNSLGERAGNTSLEEVVMALHTRP 288
                 667889999******************9999876511114555556666788899********************************9999********9998754 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (593 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       122  (0.0297416); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         9  (0.00219405); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.56u 0.15s 00:00:00.71 Elapsed: 00:00:00.76
# Mc/sec: 1029.86
//
Query:       MMETSP1137-20121227|3008_1  [L=399]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.45    9.0  12.3      0.046   12.2   2.6    2.9  3  TIGR03483 FtsZ_alphas_C: cell division protein FtsZ, alphaProteobacterial C-terminal extension


Domain annotation for each model (and alignments):
>> TIGR03483  FtsZ_alphas_C: cell division protein FtsZ, alphaProteobacterial C-terminal extension
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0      0.47   1.9e+03      75     110 ..      26      60 ..       4      64 .. 0.47
   2 ?   12.2   2.6   1.1e-05     0.046      19      88 ..      91     172 ..      78     188 .. 0.69
   3 ?    1.8   0.1     0.019        78      42      89 ..     270     315 ..     238     346 .. 0.61

  Alignments for each domain:
  == domain 1    score: -2.7 bits;  conditional E-value: 0.47
   TIGR03483  75 ralaqdasvYaprrggldeqgrpvpqaraiqedDqL 110
                 +a +  as  ap  g l +   ++++ + ++ d +L
  MMETSP1137-20121227|3008_1  26 KAYTSMASGVAPPTGTLKSSN-SQQVWQEAKRDQKL 60 
                 444555555555555554433.33334444455555 PP

  == domain 2    score: 12.2 bits;  conditional E-value: 1.1e-05
   TIGR03483  19 aaeseaeseedrgplgLlkRlanglsrRdeeadeAalepaaraaaaqpvealpkre.ralaqd...........asvYaprr 88 
                   ++e+e e +r    Llk+l ++++r  ++++eA ++ a  +a  + ++a+ + + r++ ++            s+Ya r+
  MMETSP1137-20121227|3008_1  91 LMRKEQEGERNRDNAILLKKLYDTVGRQSDASKEALTQDAREKALLEAAAARRRAQqREIDEQnqllvkkiqnyESEYATRK 172
                 3567777888889999***************988877777666666665555444456666664555555555566666665 PP

  == domain 3    score: 1.8 bits;  conditional E-value: 0.019
   TIGR03483  42 glsrRdeeadeAalepaaraaaaqpvealpkreralaqdasvYaprrg 89 
                 g+   d +  +A+l   a+  ++++ + l++ e+a+ ++a+   ++r+
  MMETSP1137-20121227|3008_1 270 GVELNDAD--KAQLCLSAARIKEAEGHELDEAEKAVLEEAAAVEKARA 315
                 44433333..35444433333333335566666666666666666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (399 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       284  (0.0692345); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.27u 0.22s 00:00:00.49 Elapsed: 00:00:00.92
# Mc/sec: 572.43
//
Query:       MMETSP1137-20121227|3009_1  [L=153]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (153 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        72  (0.0175524); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.19s 00:00:00.28 Elapsed: 00:00:00.28
# Mc/sec: 721.23
//
Query:       MMETSP1137-20121227|3010_1  [L=265]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (265 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       158  (0.0385178); expected 82.0 (0.02)
Passed bias filter:                      132  (0.0321794); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.22s 00:00:00.39 Elapsed: 00:00:00.35
# Mc/sec: 999.35
//
Query:       MMETSP1137-20121227|3012_1  [L=219]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (219 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        65  (0.0158459); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.15s 00:00:00.32 Elapsed: 00:00:00.34
# Mc/sec: 850.17
//
Query:       MMETSP1137-20121227|3013_1  [L=126]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (126 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       131  (0.0319356); expected 82.0 (0.02)
Passed bias filter:                      104  (0.0253535); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.15s 00:00:00.31 Elapsed: 00:00:00.28
# Mc/sec: 593.95
//
Query:       MMETSP1137-20121227|3014_1  [L=713]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.013   13.6   0.1      0.036   12.1   0.1    1.7  1  TIGR01803 CM-like: chorismate mutase related enzymes


Domain annotation for each model (and alignments):
>> TIGR01803  CM-like: chorismate mutase related enzymes
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.1   8.9e-06     0.036      36      59 ..     152     175 ..     131     181 .. 0.77

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 8.9e-06
   TIGR01803  36 levkidaPeRvAevkenaaRyAae 59 
                   ++ + P+RvA+v+ ++aRyA++
  MMETSP1137-20121227|3014_1 152 NXAACQGPDRVAQVLSKQARYAKQ 175
                 4577889***************87 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (713 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        83  (0.020234); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.11s 00:00:00.54 Elapsed: 00:00:00.65
# Mc/sec: 1447.82
//
Query:       MMETSP1137-20121227|3015_1  [L=302]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (302 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        71  (0.0173086); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.11s 00:00:00.32 Elapsed: 00:00:00.39
# Mc/sec: 1022.07
//
Query:       MMETSP1137-20121227|3016_1  [L=300]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (300 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        77  (0.0187713); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.14s 00:00:00.38 Elapsed: 00:00:00.44
# Mc/sec: 899.93
//
Query:       MMETSP1137-20121227|3017_1  [L=181]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (181 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        81  (0.0197465); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.14s 00:00:00.31 Elapsed: 00:00:00.34
# Mc/sec: 702.65
//
Query:       MMETSP1137-20121227|3018_1  [L=107]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (107 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        47  (0.0114578); expected 82.0 (0.02)
Passed bias filter:                       44  (0.0107265); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.12s 00:00:00.25 Elapsed: 00:00:00.27
# Mc/sec: 523.07
//
Query:       MMETSP1137-20121227|3019_1  [L=189]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (189 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        53  (0.0129205); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.16s 00:00:00.34 Elapsed: 00:00:00.33
# Mc/sec: 755.94
//
Query:       MMETSP1137-20121227|3020_1  [L=306]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (306 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       115  (0.0280351); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.16s 00:00:00.39 Elapsed: 00:00:00.39
# Mc/sec: 1035.61
//
Query:       MMETSP1137-20121227|3022_1  [L=272]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (272 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        65  (0.0158459); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.18s 00:00:00.41 Elapsed: 00:00:00.45
# Mc/sec: 797.80
//
Query:       MMETSP1137-20121227|3023_1  [L=233]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (233 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       100  (0.0243784); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.13s 00:00:00.33 Elapsed: 00:00:00.32
# Mc/sec: 961.05
//
Query:       MMETSP1137-20121227|3024_1  [L=310]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (310 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       145  (0.0353486); expected 82.0 (0.02)
Passed bias filter:                      100  (0.0243784); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.18s 00:00:00.44 Elapsed: 00:00:00.44
# Mc/sec: 929.92
//
Query:       MMETSP1137-20121227|3025_1  [L=103]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (103 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        97  (0.023647); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.13s 00:00:00.27 Elapsed: 00:00:00.30
# Mc/sec: 453.16
//
Query:       MMETSP1137-20121227|3026_1  [L=364]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (364 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       163  (0.0397367); expected 82.0 (0.02)
Passed bias filter:                      114  (0.0277913); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.16s 00:00:00.46 Elapsed: 00:00:00.65
# Mc/sec: 739.14
//
Query:       MMETSP1137-20121227|3027_1  [L=911]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (911 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       126  (0.0307167); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.57u 0.16s 00:00:00.73 Elapsed: 00:00:00.47
# Mc/sec: 2558.34
//
Query:       MMETSP1137-20121227|3028_1  [L=523]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0065   14.6   0.6      0.016   13.3   0.0    1.9  2  TIGR02230 ATPase_gene1: putative F0F1-ATPase subunit


Domain annotation for each model (and alignments):
>> TIGR02230  ATPase_gene1: putative F0F1-ATPase subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.0   0.1      0.95   3.9e+03      77      86 ..     149     158 ..     140     168 .. 0.56
   2 !   13.3   0.0   3.9e-06     0.016      26      55 ..     215     244 ..     199     262 .. 0.79

  Alignments for each domain:
  == domain 1    score: -4.0 bits;  conditional E-value: 0.95
   TIGR02230  77 tltllivgvv 86 
                 +lt +i gv+
  MMETSP1137-20121227|3028_1 149 SLTAIIFGVG 158
                 4444454443 PP

  == domain 2    score: 13.3 bits;  conditional E-value: 3.9e-06
   TIGR02230  26 rklkarkdadrsvwlglgmlgligwsvaip 55 
                  kl    d +rs+wlgl+mlgl+ +s  + 
  MMETSP1137-20121227|3028_1 215 AKLLGSTDETRSAWLGLAMLGLLVFSGVLA 244
                 577788899*************98885544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (523 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       227  (0.0553389); expected 82.0 (0.02)
Passed bias filter:                      122  (0.0297416); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.11s 00:00:00.49 Elapsed: 00:00:00.52
# Mc/sec: 1327.51
//
Query:       MMETSP1137-20121227|3029_1  [L=763]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (763 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        84  (0.0204778); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.47u 0.13s 00:00:00.60 Elapsed: 00:00:02.97
# Mc/sec: 339.08
//
Query:       MMETSP1137-20121227|3030_1  [L=1919]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1919 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       167  (0.0407118); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 1.09u 0.16s 00:00:01.25 Elapsed: 00:00:01.98
# Mc/sec: 1279.23
//
Query:       MMETSP1137-20121227|3032_1  [L=208]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (208 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.16s 00:00:00.36 Elapsed: 00:00:00.34
# Mc/sec: 807.46
//
Query:       MMETSP1137-20121227|3033_1  [L=332]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (332 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        53  (0.0129205); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.16s 00:00:00.43 Elapsed: 00:00:00.33
# Mc/sec: 1327.89
//
Query:       MMETSP1137-20121227|3034_1  [L=171]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-09   35.7   5.1    7.1e-09   33.5   3.5    1.8  1  TIGR00803 nst: UDP-galactose transporter


Domain annotation for each model (and alignments):
>> TIGR00803  nst: UDP-galactose transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.5   3.5   1.7e-12   7.1e-09      95     222 .]       3     148 ..       2     148 .. 0.82

  Alignments for each domain:
  == domain 1    score: 33.5 bits;  conditional E-value: 1.7e-12
   TIGR00803  95 lssglagvyfekilkdkdtsfyvrnlqlplfgllvt..................fvvlllsdgslisnkgffigyttavwivvllnvvgglcvglvvkyadnttksivlalsiilsllls.vrlfdaklsltfalgvilvflatllY 222
                 ++s l  v  ek+lk   +  +v+n+q +   ++                       ll+ +g ++s    f g t avw vvll+++ gl++ +  kyadn+++  +   si+  +l+s v l+ +++  + +lgv lv+++++lY
  MMETSP1137-20121227|3034_1   3 FISALPNVAYEKVLKTEGENQWVNNVQVTAWIIVWIalssllqlgaslwrgmpvPTQLLSPSGLASSLTASFSGFTPAVWGVVLLKALNGLLIPATFKYADNILYAYAKPSSIVATTLMSsVLLMALPA-PSLMLGVALVVASIALY 148
                 5666677777888888888888888888877776666677788888887777754556666666777777799***********************************************777776666.5668************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (171 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       108  (0.0263286); expected 82.0 (0.02)
Passed bias filter:                       41  (0.00999512); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.19u 0.15s 00:00:00.34 Elapsed: 00:00:00.26
# Mc/sec: 868.08
//
Query:       MMETSP1137-20121227|3035_1  [L=304]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (304 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        93  (0.0226719); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.17s 00:00:00.43 Elapsed: 00:00:00.28
# Mc/sec: 1433.02
//
Query:       MMETSP1137-20121227|3036_1  [L=76]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (76 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        16  (0.00390054); expected 82.0 (0.02)
Passed bias filter:                       12  (0.0029254); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.13s 00:00:00.25 Elapsed: 00:00:00.26
# Mc/sec: 385.81
//
Query:       MMETSP1137-20121227|3037_1  [L=300]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (300 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        79  (0.0192589); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.14s 00:00:00.38 Elapsed: 00:00:00.44
# Mc/sec: 899.93
//
Query:       MMETSP1137-20121227|3038_1  [L=167]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0024   13.8   0.0     0.0029   13.5   0.0    1.1  1  TIGR02956 TMAO_torS: TMAO reductase sytem sensor TorS


Domain annotation for each model (and alignments):
>> TIGR02956  TMAO_torS: TMAO reductase sytem sensor TorS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   0.0   7.1e-07    0.0029     644     696 ..       3      55 ..       1      64 [. 0.88

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 7.1e-07
   TIGR02956 644 gGTGLGLAiskrlveamdgelsveSelgkGScFafelplergkkaeksatkev 696
                   TGLGL  sk+l+++++g ++   +   G +F  e+p++  ++a++++ ++ 
  MMETSP1137-20121227|3038_1   3 ESTGLGLYHSKQLASILGGRVGYRPNAAGGATFVVEVPITFVSAAKTQEVLAK 55 
                 56*************************************99999888876554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (167 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       107  (0.0260848); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.19u 0.15s 00:00:00.34 Elapsed: 00:00:00.38
# Mc/sec: 580.06
//
Query:       MMETSP1137-20121227|3039_1  [L=87]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (87 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       104  (0.0253535); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.15s 00:00:00.28 Elapsed: 00:00:00.28
# Mc/sec: 410.11
//
Query:       MMETSP1137-20121227|3040_1  [L=462]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (462 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        99  (0.0241346); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.18s 00:00:00.51 Elapsed: 00:00:01.27
# Mc/sec: 480.15
//
Query:       MMETSP1137-20121227|3041_1  [L=534]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (534 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        96  (0.0234032); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.15s 00:00:00.53 Elapsed: 00:00:00.36
# Mc/sec: 1957.84
//
Query:       MMETSP1137-20121227|3042_1  [L=359]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      1e-85  285.7   2.3    1.8e-83  278.3   1.6    2.0  1  TIGR01534 GAPDH-I: glyceraldehyde-3-phosphate dehydrogenase, type I
    2.8e-55  185.7   0.4    7.9e-42  141.5   0.1    2.0  2  TIGR01532 E4PD_g-proteo: erythrose-4-phosphate dehydrogenase
    9.1e-05   19.5   0.1      0.011   12.6   0.0    2.1  2  TIGR01296 asd_B: aspartate-semialdehyde dehydrogenase


Domain annotation for each model (and alignments):
>> TIGR01534  GAPDH-I: glyceraldehyde-3-phosphate dehydrogenase, type I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  278.3   1.6   1.3e-86   1.8e-83      14     328 ..      46     344 ..      41     346 .. 0.91

  Alignments for each domain:
  == domain 1    score: 278.3 bits;  conditional E-value: 1.3e-86
   TIGR01534  14 vlrallekkskdlevvaindl.tdleklayllkyDsvhGrfeeevtvsekkallvngkkvivlaserdpkdlpwkelgvdlvlectGafldkekalekhleagakkVllsaPskdeaaitlVygvNeeeldeseekiiSaASCTTnclapllkvleeefgiksglmtTvHayTadQkllDavh..akdlrraRaaaeniiptstgaakavakvlpelagkltgeavRvPtpdvSlvdlvlnlekevtkeevnaalkeaseg........lkgvlgysedelVSsDiigspkssivdakatkvtelkeklvkvvaWYDNElgysnrl 328
                 ++r+++e ++  +e+va+n++  ++e++ayl+++DsvhG+++ +++ ++++a++v+gk ++++++e+d ++++wk +gv++v +ctG+fl++e++                Ps    + ++V+gvN+++l+e ++ i +aASCTTnc+ap++kv++e+ gi++g++tTvH +T++Q+l+D ++  +kdlrr+R+ + n+ ptstg+a+ava+v+pel+gkl+g+a+RvP+ + S++d+v+nl++e+t++evn +l++a+ +          ++lg+++++lVS+D ++++     ++++t+v  +++k++kv+aWYDNE gys r 
  MMETSP1137-20121227|3042_1  46 TFRYAWEMEG--IEIVAVNEIvGGAETAAYLVQFDSVHGTWSRKCESTSATAFTVDGK-EVAFSEEKDFTKVDWKGMGVEIVXDCTGKFLSSEVE----------------PS----VLNVVVGVNDDKLNE-SHLICTAASCTTNCIAPVIKVIHEKLGIETGMITTVHNITGTQSLVDMPNskKKDLRRSRSGMLNLAPTSTGSATAVAEVFPELKGKLNGHAIRVPMLNSSITDMVFNLARETTVAEVNGLLQDAAAEgalaataeHGEILGFETRPLVSTDYVNDAAPPS-STHSTMV--VGGKMLKVYAWYDNEAGYSMRT 344
                 7888899855..*********9***********************************5.777888*************************77765................66....569**********96.9***********************************************997569*********************************************************************99877786655545689**************9876554.5566677..4568***************986 PP

>> TIGR01532  E4PD_g-proteo: erythrose-4-phosphate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.8   0.0   6.3e-15   8.6e-12      24     104 ..      53     135 ..      41     142 .. 0.86
   2 !  141.5   0.1   5.7e-45   7.9e-42     131     322 ..     143     343 ..     134     346 .. 0.89

  Alignments for each domain:
  == domain 1    score: 42.8 bits;  conditional E-value: 6.3e-15
   TIGR01532  24 raeievvalnelad.aaavayllkydtshgrfakevkvdrdqly.vnddairvlreselealdwrelgvdlvldctgvygsre 104
                  ++ie+va+ne+   a++ ayl+++d+ hg ++++ +    + + v++  +   +e++   +dw+ +gv++v dctg++ s e
  MMETSP1137-20121227|3042_1  53 MEGIEIVAVNEIVGgAETAAYLVQFDSVHGTWSRKCESTSATAFtVDGKEVAFSEEKDFTKVDWKGMGVEIVXDCTGKFLSSE 135
                 578********976267889***************998776655288899***************************997765 PP

  == domain 2    score: 141.5 bits;  conditional E-value: 5.7e-45
   TIGR01532 131 ivygvnqedlsaeekivsnascttncivplikllddaigiesgtittihsamndqqvida...yhndlrrtraasqsiipvdtklakgierllpkladrleaiavrvptvnvtaldlsvtvkkdvkanevnrvlreaa.esal.....rg.ivdytelplvsvdfnhdphsaivdgtqtrvsgarlvkllvwcdnewgfanr 322
                 +v gvn+++l+  + i + ascttnci p+ik++++ +gie+g itt+h     q ++d     ++dlrr+r+ +  + p +t+ a  +  ++p+l+++l+  a+rvp +n +  d+  ++ +++ ++evn +l++aa e+al     +g i+ +   plvs d+  d          t v g++++k+ +w+dne g++ r
  MMETSP1137-20121227|3042_1 143 VVVGVNDDKLNESHLICTAASCTTNCIAPVIKVIHEKLGIETGMITTVHNITGTQSLVDMpnsKKKDLRRSRSGMLNLAPTSTGSATAVAEVFPELKGKLNGHAIRVPMLNSSITDMVFNLARETTVAEVNGLLQDAAaEGALaataeHGeILGFETRPLVSTDYVNDAAPP-SSTHSTMVVGGKMLKVYAWYDNEAGYSMR 343
                 899*******************************************************96222556*********************************************************************97525677222223347778888*******9996544.3456799*******************987 PP

>> TIGR01296  asd_B: aspartate-semialdehyde dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.6   0.0   8.3e-06     0.011      87     159 ..     123     196 ..      99     224 .. 0.82
   2 !    4.9   0.0    0.0019       2.6     235     272 ..     243     280 ..     234     291 .. 0.90

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 8.3e-06
   TIGR01296  87 iviDntsafr...ldedvPLvvpevnaeelkeakkkgiianPnCstiqlvvvLkplkdeaklkrvvvstYqavsGa 159
                 iv D t  f    +++ v  vv  vn ++l+e +   i     C+t  + +v+k+++++++++  ++ t   + G+
  MMETSP1137-20121227|3042_1 123 IVXDCTGKFLsseVEPSVLNVVVGVNDDKLNESH--LICTAASCTTNCIAPVIKVIHEKLGIETGMITTVHNITGT 196
                 5566666664111355666788999999999888..788999***************************9999875 PP

  == domain 2    score: 4.9 bits;  conditional E-value: 0.0019
   TIGR01296 235 satcvrvPvftghsesvsiefekelsveevkelLkeap 272
                  + ++rvP++ +    +  ++++e +v ev+ lL++a 
  MMETSP1137-20121227|3042_1 243 NGHAIRVPMLNSSITDMVFNLARETTVAEVNGLLQDAA 280
                 67789*******************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (359 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        99  (0.0241346); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.32u 0.11s 00:00:00.43 Elapsed: 00:00:00.50
# Mc/sec: 947.68
//
Query:       MMETSP1137-20121227|3043_1  [L=912]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        0.4    7.7  10.0      0.019   12.0   0.1    2.4  2  TIGR00599 rad18: DNA repair protein rad18


Domain annotation for each model (and alignments):
>> TIGR00599  rad18: DNA repair protein rad18
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   3.3     0.083   3.4e+02     103     162 ..     270     329 ..     256     388 .. 0.75
   2 ?   12.0   0.1   4.6e-06     0.019      29      60 ..     804     838 ..     771     843 .. 0.82

  Alignments for each domain:
  == domain 1    score: -2.0 bits;  conditional E-value: 0.083
   TIGR00599 103 kttkvesedlaapessskkklieeeeakgvdeeseddlrsasssraaakkktadilqlss 162
                 ++  + + d aa  ss k+ +++ ++a++  + s+ ++r+a+s +a ++ + a+   +  
  MMETSP1137-20121227|3043_1 270 QACADAQSDAAAVGSSGKNTAVAASAATSGRAVSKSSKRAATSRKAESAVEDATTEAEAR 329
                 455556778888888889999999999998888998888888888888777775443332 PP

  == domain 2    score: 12.0 bits;  conditional E-value: 4.6e-06
   TIGR00599  29 ChvCkdffka..P.vltsCsHtFCslCiRrcLsee 60 
                 C +C +   +  P vlt C+HtFC  C+ +++s +
  MMETSP1137-20121227|3043_1 804 CPICYELIGKhgPvVLTQCAHTFCKGCLLTWMSAQ 838
                 8999998743236369***********99988876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (912 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       194  (0.047294); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.16s 00:00:00.71 Elapsed: 00:00:00.52
# Mc/sec: 2314.89
//
Query:       MMETSP1137-20121227|3044_1  [L=222]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (222 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        65  (0.0158459); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.16s 00:00:00.38 Elapsed: 00:00:00.27
# Mc/sec: 1085.24
//
Query:       MMETSP1137-20121227|3045_1  [L=473]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (473 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        59  (0.0143832); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.13s 00:00:00.44 Elapsed: 00:00:00.44
# Mc/sec: 1418.88
//
Query:       MMETSP1137-20121227|3046_1  [L=585]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (585 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        74  (0.01804); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.14s 00:00:00.50 Elapsed: 00:00:00.43
# Mc/sec: 1795.67
//
Query:       MMETSP1137-20121227|3047_1  [L=361]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (361 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        68  (0.0165773); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.15s 00:00:00.40 Elapsed: 00:00:00.40
# Mc/sec: 1191.20
//
Query:       MMETSP1137-20121227|3048_1  [L=902]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (902 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       130  (0.0316919); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.52u 0.15s 00:00:00.67 Elapsed: 00:00:00.54
# Mc/sec: 2204.71
//
Query:       MMETSP1137-20121227|3051_1  [L=169]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (169 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        42  (0.0102389); expected 82.0 (0.02)
Passed bias filter:                       39  (0.00950756); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.13s 00:00:00.30 Elapsed: 00:00:00.25
# Mc/sec: 892.25
//
Query:       MMETSP1137-20121227|3055_1  [L=160]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (160 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        62  (0.0151146); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.17s 00:00:00.34 Elapsed: 00:00:00.28
# Mc/sec: 728.22
//
Query:       MMETSP1137-20121227|3056_1  [L=203]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (203 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        61  (0.0148708); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.13s 00:00:00.34 Elapsed: 00:00:00.40
# Mc/sec: 669.84
//
Query:       MMETSP1137-20121227|3057_1  [L=208]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (208 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       121  (0.0294978); expected 82.0 (0.02)
Passed bias filter:                      100  (0.0243784); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.14s 00:00:00.34 Elapsed: 00:00:00.32
# Mc/sec: 857.93
//
Query:       MMETSP1137-20121227|3058_1  [L=748]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.6e-54  182.6   0.0      1e-52  177.4   0.0    2.2  2  TIGR02766 crypt_chrom_pln: cryptochrome, plant family
    2.3e-46  156.5   0.1    2.1e-45  153.3   0.0    2.0  2  TIGR03556 photolyase_8HDF: deoxyribodipyrimidine photo-lyase, 8-HDF type
    2.2e-29  100.4   0.0    4.4e-28   96.1   0.0    2.3  2  TIGR02765 crypto_DASH: cryptochrome, DASH family
    0.00028   18.2   0.0    0.00056   17.1   0.0    1.4  1  TIGR00591 phr2: deoxyribodipyrimidine photolyase


Domain annotation for each model (and alignments):
>> TIGR02766  crypt_chrom_pln: cryptochrome, plant family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    2.9   0.1    0.0082       8.4       3      25 ..     110     133 ..     108     139 .. 0.87
   2 !  177.4   0.0     1e-55     1e-52      68     478 ..     244     651 ..     236     653 .. 0.86

  Alignments for each domain:
  == domain 1    score: 2.9 bits;  conditional E-value: 0.0082
   TIGR02766   3 vvwfrr.dlrvednpalaaaareg 25 
                 +vwfr  dlr+ d   la aar+ 
  MMETSP1137-20121227|3058_1 110 LVWFRAfDLRLSDHAPLAVAARAE 133
                 79***66**************985 PP

  == domain 2    score: 177.4 bits;  conditional E-value: 1e-55
   TIGR02766  68 klvlkrsedtvaalldvvkstgatklvfnhlydpvslvrdhkvkeklaakgisvqsfnadllyepwevvde...kgkaftsfaaywekclelpida.spllppkklvpvta...sedvs.acsvdd.lvleddsekssnallarawspgwsnadklleefiek.qlleysknrkkvdsa.stsllspylhfgevsvrkvfqlvrlkqivwanegnseaeesvelflrsiglreysrylsfnfpfsheksllahlkffpwkvdeekfkawrqgrtgyplvdagmrelwatgwlhdrirvvvssfavkvlllpwkwgmkyfwdtlldadlesdilgwqyisgslpdgreldrldnpelegakydpegeyvrrwlpelarlptewihhpwdapesvlkaagvelgsnypkpiv.dldaarelleea 478
                 +lv   +++  a +l++ ++  a+++++   y+p     +  v   l a g  v+ + + llyep  v      +g  + ++ ++ + c      +  pl+pp  l p ++   s ++   c +   +  +  + +   + l   w    ++a   +e f++  +l  y  +r ++d   + s lspyl fg++s r++++ v+   +           e  + f r +  r+ + +    fp     ++  h   + w+ d   ++ w++g+tg   vda mr l+atgwlh+ +r+vv+sf+v +l + w+ g  +f dtl+dad+  + + wq    s  d  ++  +  pe      dp+g + r+wlpela+lpt+ +h pw a   vl aag+elg++yp+ +v dl +ar++   a
  MMETSP1137-20121227|3058_1 244 ALVAAEAASVAAEMLSLANECDACEVLWHRSYEPDEERVERAVSAALHASGRRVREMPGRLLYEPHTVNLSggfNGGHWGTLMPFLRACERQGPPPpLPLPPPTSLPPPANwpaSLALEgLCLAPRpVRADGTAARDWATELLAYWDVSEEKAREQMELFVHAgGLQGYETRRSRADVKgTVSTLSPYLRFGQLSPRQLYHAVKGSPL---------PRELKKTFSRRLHWRDLAYFHLSSFPDMPSFPIRRHYAAHAWVGDSAALRRWQRGQTG--XVDASMRCLYATGWLHQSLRMVVASFLVEYLGINWTKGAEWFHDTLVDADVGINSMMWQNAGRSGIDQWNF--VLSPES--GSQDPSGAFCRTWLPELAKLPTKQLHTPWLASPQVLAAAGIELGVDYPHRMVaDLTEARSRTVSA 651
                 6788888888999**********************9999999**************************987223456789999******87655544899999999875432214455424555440444446777777888889****************8616778999999998652679******************9975554.........556667799999999999999999*********************************9..59**********************************************************99998887766..667864..456*********************************************88764899999987666 PP

>> TIGR03556  photolyase_8HDF: deoxyribodipyrimidine photo-lyase, 8-HDF type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.0     0.037        37       3      24 ..     109     131 ..     107     138 .. 0.80
   2 !  153.3   0.0   2.1e-48   2.1e-45      83     440 ..     258     616 ..     244     639 .. 0.86

  Alignments for each domain:
  == domain 1    score: 0.8 bits;  conditional E-value: 0.037
   TIGR03556   3 ilfwhrr.dlrlsdnlglaaarq 24 
                 +l+w r  dlrlsd+  la a +
  MMETSP1137-20121227|3058_1 109 LLVWFRAfDLRLSDHAPLAVAAR 131
                 68999855**********98754 PP

  == domain 2    score: 153.3 bits;  conditional E-value: 2.1e-48
   TIGR03556  83 pklakaleakavywnldvepysrkrdravaaalkekgiavktawdqllhspeeiltk...sgkpytvytpfwknwsskkkae..pvetpkeleglteaeke.aiaklgvialptakd..lgfewdadlil..epgeaaaeakleefvd.kaieeyqeqrnfpaldgt.sqlsaalkfgvigirtvwqatlealeasrseearesirtwqqelawrefyqhalysfpeladgpyrekfkefpwenneahfqawcegktgypivdaamrqlnetgwmhnrcrmivasfltkdliinwqwgekyfmqklidgdlaannggwqwsassgmdpkplrifnpasqaqkfdpeaeyirrwlpelrsldtkdlvtgki 440
                   la++ +a  v w++  ep  ++ +rav aal++ g +v+++  +ll++p+ +  +   +g  +    pf +  + +  +   p+  p++l + ++   + a++ l +   p  +d     +w ++l+   +  e+ a++++e fv+  +++ y+ +r    ++gt s+ls+ l+fg +++r++++a +       s   re  +t+ + l wr++  + l sfp++ + p r +++   w  + a ++ w +g+tg   vda+mr l  tgw+h+  rm+vasfl+  l inw +g ++f ++l+d d+  n   wq +  sg+d   + ++ p s +q  dp + + r+wlpel++l tk+l t  +
  MMETSP1137-20121227|3058_1 258 LSLANECDACEVLWHRSYEPDEERVERAVSAALHASGRRVREMPGRLLYEPHTVNLSggfNGGHWGTLMPFLRACERQGPPPplPLPPPTSLPPPANWPASlALEGLCLAPRPVRADgtAARDWATELLAywDVSEEKAREQMELFVHaGGLQGYETRRSRADVKGTvSTLSPYLRFGQLSPRQLYHAVKG------SPLPRELKKTFSRRLHWRDLAYFHLSSFPDMPSFPIRRHYAAHAWVGDSAALRRWQRGQTGX--VDASMRCLYATGWLHQSLRMVVASFLVEYLGINWTKGAEWFHDTLVDADVGINSMMWQNAGRSGIDQWNF-VLSPESGSQ--DPSGAFCRTWLPELAKLPTKQLHTPWL 616
                 4799*************************************************9866222456789999****98877665500556667776655544431334455555566665224568*99997523689***********96268***************9789***************987654......44556667899**************************************************5..9*****************************************************************8875.789999998..9*******************9988655 PP

>> TIGR02765  crypto_DASH: cryptochrome, DASH family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.0     0.018        19       2      26 ..     108     133 ..     107     152 .. 0.86
   2 !   96.1   0.0   4.3e-31   4.4e-28     209     431 .]     389     603 ..     245     603 .. 0.74

  Alignments for each domain:
  == domain 1    score: 1.8 bits;  conditional E-value: 0.018
   TIGR02765   2 vvlllfr.ndLRleDnellakasske 26 
                 + l++fr  dLRl+D++ la a++ e
  MMETSP1137-20121227|3058_1 108 TLLVWFRaFDLRLSDHAPLAVAARAE 133
                 679999956*********99988765 PP

  == domain 2    score: 96.1 bits;  conditional E-value: 4.3e-31
   TIGR02765 209 fkGGetsalarvkeyflskslksYketRngllgvdystklspwLalGcvsarqihealkrYekergendstywvifeLlWRdyfrflalkygdk.lFrleGlrgkkaktkedekilekwkegttgyplvdanmreLaatGymsnRgRqnvasflvkelgldWryGaewfetlLvDyDvssnwgnWqylaGvgndpRgaRqFnlekqakdYDpdgeyvktWvkel 431
                 +   e++a ++++ ++  ++l+ Y   R   +     + lsp+L +G +s+rq+++a+k         +  ++ +  L WRd  +f    + d   F +         +  d+  l++w++g+tg   vda+mr L atG++    R +vasflv+ lg++W  Gaewf  +LvD Dv+ n   Wq +   g d   +  F l   + + Dp g++ +tW++el
  MMETSP1137-20121227|3058_1 389 WDVSEEKAREQMELFVHAGGLQGYETRRSRADVKGTVSTLSPYLRFGQLSPRQLYHAVKGSPLP---RELKKTFSRRLHWRDLAYFHLSSFPDMpSFPIRRHY-AAHAWVGDSAALRRWQRGQTGX--VDASMRCLYATGWLHQSLRMVVASFLVEYLGINWTKGAEWFHDTLVDADVGINSMMWQNAGRSGID---QWNFVLSPESGSQDPSGAFCRTWLPEL 603
                 45679999999999999999****988888887788889*******************976554...45556778899****988887777765256665544.55679***************85..**********************************************************98777888...778999999***************985 PP

>> TIGR00591  phr2: deoxyribodipyrimidine photolyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.0   5.5e-07   0.00056     227     277 ..     395     447 ..     385     469 .. 0.84

  Alignments for each domain:
  == domain 1    score: 17.1 bits;  conditional E-value: 5.5e-07
   TIGR00591 227 aglevleefisk.rLklfeekrndP.nkdalsnlsPylhfGqlsaqrvalevk 277
                  + e++e f++   L+ +e++r    +k + s lsPyl+fGqls++++ ++vk
  MMETSP1137-20121227|3058_1 395 KAREQMELFVHAgGLQGYETRRSRAdVKGTVSTLSPYLRFGQLSPRQLYHAVK 447
                 566778889986369******987615689***************99988776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (748 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        70  (0.0170648); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.56u 0.15s 00:00:00.71 Elapsed: 00:00:00.60
# Mc/sec: 1645.46
//
Query:       MMETSP1137-20121227|3059_1  [L=146]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.026   11.2   0.0      0.029   11.0   0.0    1.0  1  TIGR00707 argD: acetylornithine and succinylornithine transaminases


Domain annotation for each model (and alignments):
>> TIGR00707  argD: acetylornithine and succinylornithine transaminases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   6.9e-06     0.029     112     184 ..      55     138 ..      36     145 .. 0.79

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 6.9e-06
   TIGR00707 112 gkekkkivafknsFHGRtlgalsa....tgkpkykkdFeplvpgvkyveyndiealkeaidde.......taavivEpiqGEgG 184
                 +++++++  + +  HG  ++++       +++ y++dFe lv+ ++  +y +i+a +++id +       ta     p+q E+G
  MMETSP1137-20121227|3059_1  55 SESRNELYKMIHGEHGPPMTGVMThrytRTQSLYRDDFEQLVSRMSDHPYINITAHSNQIDSSphnlltgTAYCASAPLQTESG 138
                 566777777888888888877654122146899***************************998888887777777778888877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (146 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        60  (0.014627); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.16u 0.16s 00:00:00.32 Elapsed: 00:00:00.41
# Mc/sec: 470.01
//
Query:       MMETSP1137-20121227|3061_1  [L=129]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.9e-06   26.1   5.7    2.8e-06   25.5   3.9    1.4  1  TIGR04102 SWIM_PBPRA1643: SWIM/SEC-C metal-binding motif protein, PBPRA1643 family


Domain annotation for each model (and alignments):
>> TIGR04102  SWIM_PBPRA1643: SWIM/SEC-C metal-binding motif protein, PBPRA1643 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.5   3.9   6.9e-10   2.8e-06      82     108 .]     100     126 ..      82     126 .. 0.83

  Alignments for each domain:
  == domain 1    score: 25.5 bits;  conditional E-value: 6.9e-10
   TIGR04102  82 tvtvektpnrndpCsCGsgkkykkCCa 108
                 t + + + + nd+C+C sgkkykkCC+
  MMETSP1137-20121227|3061_1 100 TAKSAPKVKPNDSCTCNSGKKYKKCCG 126
                 4455556678****************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (129 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       131  (0.0319356); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.16u 0.15s 00:00:00.31 Elapsed: 00:00:00.33
# Mc/sec: 515.96
//
Query:       MMETSP1137-20121227|3062_1  [L=183]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (183 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       131  (0.0319356); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.11s 00:00:00.28 Elapsed: 00:00:00.28
# Mc/sec: 862.64
//
Query:       MMETSP1137-20121227|3063_1  [L=432]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (432 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        43  (0.0104827); expected 82.0 (0.02)
Passed bias filter:                       33  (0.00804486); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.14s 00:00:00.42 Elapsed: 00:00:00.52
# Mc/sec: 1096.52
//
Query:       MMETSP1137-20121227|3065_1  [L=234]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (234 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        92  (0.0224281); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.13s 00:00:00.33 Elapsed: 00:00:00.38
# Mc/sec: 812.77
//
Query:       MMETSP1137-20121227|3067_1  [L=218]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (218 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        66  (0.0160897); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.14s 00:00:00.35 Elapsed: 00:00:00.33
# Mc/sec: 871.93
//
Query:       MMETSP1137-20121227|3068_1  [L=460]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   4.2e-149  494.3   0.0   4.9e-149  494.1   0.0    1.0  1  TIGR00707 argD: acetylornithine and succinylornithine transaminases
   3.7e-123  409.2   0.4   6.5e-123  408.4   0.3    1.4  1  TIGR03246 arg_catab_astC: succinylornithine transaminase family
    4.5e-91  303.4   0.0    5.7e-91  303.0   0.0    1.1  1  TIGR01885 Orn_aminotrans: ornithine--oxo-acid transaminase
      9e-74  246.3   0.7    1.7e-73  245.5   0.5    1.4  1  TIGR00700 GABAtrnsam: 4-aminobutyrate transaminase
    7.2e-73  243.4   0.0    8.7e-73  243.1   0.0    1.0  1  TIGR00508 bioA: adenosylmethionine-8-amino-7-oxononanoate transaminase
    8.1e-70  233.7   1.0    1.1e-69  233.3   0.7    1.0  1  TIGR03372 putres_am_tran: putrescine aminotransferase
    4.5e-66  221.0   0.5    2.3e-65  218.8   0.3    1.8  1  TIGR00709 dat: 2,4-diaminobutyrate 4-transaminase
      2e-60  202.4   0.0    2.6e-60  202.0   0.0    1.1  1  TIGR02407 ectoine_ectB: diaminobutyrate--2-oxoglutarate aminotransferase
    2.2e-53  179.1   0.1      9e-53  177.1   0.0    1.8  1  TIGR03251 LAT_fam: L-lysine 6-transaminase
    4.4e-41  138.7   0.0    6.4e-41  138.2   0.0    1.2  1  TIGR00713 hemL: glutamate-1-semialdehyde-2,1-aminomutase
    7.4e-30  101.9   0.0    9.4e-25   85.1   0.0    2.9  3  TIGR00699 GABAtrns_euk: 4-aminobutyrate aminotransferase


Domain annotation for each model (and alignments):
>> TIGR00707  argD: acetylornithine and succinylornithine transaminases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  494.1   0.0  1.3e-151  4.9e-149       2     380 ..      56     452 ..      55     453 .. 0.98

  Alignments for each domain:
  == domain 1    score: 494.1 bits;  conditional E-value: 1.3e-151
   TIGR00707   2 llqtyarlelaivrgkgakvyDveGkeYlDlvaGiavnalGHahpklvealkeqleklvhvsnlyateeqlelaeklvelsaadrvffcnsGaeanEaAlklarkaarkk.gkekkkivafknsFHGRtlgalsatgkpkykkdFeplvpgvkyveyndiealkeaidde..............taavivEpiqGEgGvvpadkeflkalrelceekdvllivDEvqtGlGRtGklfayehygvePDiltlakalggGvPigavlakeevaealtvGdHgstfGGnplacaaalavleviekeellekvkekgeilkkkleellkkki.ikevrGkGLllGieleaes.l..keivkkleekGllvntagekvlrlvppLiieeeeieeavealeevi 380
                 +++ty+r++lai +g+g+ ++D+eGk+YlD++aGia+++lGHa ++l+ a++ q+ k+ hvsnl++ ++q ela++l e+ + dr ffcnsGaeanEaA+klark+a++k g +k  i+++ nsFHGRtl++++atg+pky+ +F+plvpg++yv+ynd+ al+e++ +                aa+++Ep+qGEgG++p+++ef++a r lc+e+++ll+vDEvqtG+ RtG ++a++ +gve D+lt+akalggGvPiga+++k+  ++++t+G+H++tfGGnplacaa++avl+ ie+++lle+v+++ge+l+  l++l++++  i++vrG+GL++G+el  es +  + +  ++ +kGl+  +ag++vlr+vppL+++e+ei+ea++++e ++
  MMETSP1137-20121227|3068_1  56 VMNTYGRFKLAISHGEGCSLFDTEGKRYLDFAAGIATCTLGHADERLASAVSAQMRKVNHVSNLFYIPQQGELARRLLETNNLDRAFFCNSGAEANEAAIKLARKYAHDKrGVKKPVIITAVNSFHGRTLATITATGQPKYQAGFGPLVPGFEYVPYNDVAALEETVRKFtgpklpfglgeegeLAAIMMEPLQGEGGIRPGSTEFFEAARRLCDETGALLMVDEVQTGVCRTGSFWAHQKLGVEVDVLTSAKALGGGVPIGAMMCKT-SCDVFTPGTHATTFGGNPLACAAGNAVLDAIEEDKLLENVNARGEQLQAGLRKLQETMPlITDVRGWGLIVGFELAPESgItaAALCGEVLKKGLMTVPAGPSVLRMVPPLVVSEAEISEALSIVEVAL 452
                 79**********************************************************************************************************99899******************************************************9989999********************************************************************************************99.6789*****************************************************999***************99985345788899*********************************9998765 PP

>> TIGR03246  arg_catab_astC: succinylornithine transaminase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  408.4   0.3  1.8e-125  6.5e-123       4     397 .]      50     456 ..      47     456 .. 0.96

  Alignments for each domain:
  == domain 1    score: 408.4 bits;  conditional E-value: 1.8e-125
   TIGR03246   4 esfdevmvpvyapakfipvrgeGsrvwdqegkeyidfaGGiavnalGhahpelvealkeqaeklwhlgngytnepvlrlakklvdatfadkvffcnsGaeaneaalklarkvaldkygaekseivafknsfhGrtlftvsvGGqakysedfaplpegikhaayndlealkalisdkt..............cavivepiqGegGvvpadkaflkglrelcdrhnallifdevqtGvGrtGelyaymeyGvtpdiltsakalGgGfpiGalltteelakvlkvGthGttyGGnplacavaekvldlvntaelleGvkqrhelfvdelekinarykvfseirGkGlliGavlteeyaGkakdlvnaaaeeGvlvliaGpdvvrfapslvieeeeikeGlarlekaveklv 397
                 e fd+ ++ +y   k+   +geG  ++d+egk y+dfa Gia  +lGha   l +a++ q +k+ h++n +      +la++l ++   d++ffcnsGaeaneaa+klark+a+dk g +k  i++  nsfhGrtl t+++ Gq+ky+ +f+pl+ g ++++ynd++al++++ + t               a+++ep+qGegG+ p +++f++++r+lcd+++all+ devqtGv rtG+++a++++Gv+ d+ltsakalGgG+piGa+++++++ +v++ Gth tt+GGnplaca  ++vld +++ +lle v++r e++ + l k++++  + +++rG Gl++G +l  e    a  l  +  ++G++ + aGp+v+r+ p lv++e+ei+e l+ +e a+ +lv
  MMETSP1137-20121227|3068_1  50 EAFDKAVMNTYGRFKLAISHGEGCSLFDTEGKRYLDFAAGIATCTLGHADERLASAVSAQMRKVNHVSNLFYIPQQGELARRLLETNNLDRAFFCNSGAEANEAAIKLARKYAHDKRGVKKPVIITAVNSFHGRTLATITATGQPKYQAGFGPLVPGFEYVPYNDVAALEETVRKFTgpklpfglgeegelAAIMMEPLQGEGGIRPGSTEFFEAARRLCDETGALLMVDEVQTGVCRTGSFWAHQKLGVEVDVLTSAKALGGGVPIGAMMCKTSC-DVFTPGTHATTFGGNPLACAAGNAVLDAIEEDKLLENVNARGEQLQAGLRKLQETMPLITDVRGWGLIVGFELAPESGITAAALCGEVLKKGLMTVPAGPSVLRMVPPLVVSEAEISEALSIVEVALRELV 456
                 78*************************************************************************************************************************************************************************9976543333333333333379******************************************************************************99976.79**************************************************************************************************************************9998875 PP

>> TIGR01885  Orn_aminotrans: ornithine--oxo-acid transaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  303.0   0.0   1.5e-93   5.7e-91      13     401 ..      57     452 ..      47     453 .. 0.94

  Alignments for each domain:
  == domain 1    score: 303.0 bits;  conditional E-value: 1.5e-93
   TIGR01885  13 ahnyhplpvvlskaeGakvwdvegkryldflsaysavnqGhchpkivkalveqaqkltlssrafyndvfgefaeyvtklfGydkvlpmntGaeavetaiklarkWgykkkkipedkalilsaegnfhGrtlavislstdpesrenfGpyvpnvkkieynnlealeealeea...........gekvaaflvePiqGeaGvvvpddgylkkvrelckkynvlliadeiqtGiartGkllaveheevkPdivllGkalsgGvyPvsavladkevmltikpgehGstygGnPlasavavaalevlkeeklaeraeklGeelreelkklkk..eivkevrGkGllnaivideskangreawdlclklkekGllakptheeiirlaPPlviteeelkeaveiikkvl 401
                  ++y  + +++s++eG +++d+egkryldf ++ ++   Gh+  ++ +a+  q +k+ + s  fy  + ge+a+ + ++   d+ +  n+Gaea+e+aiklark++++k+++   k +i++a ++fhGrtla+i+++ +p+ + +fGp+vp+++ ++yn+++alee++++            + ++aa+++eP+qGe G+   + ++++ +r lc++   ll++de+qtG++rtG + a++  +v  d+++  kal+gGv P+ a++++ +   +++pg+h +t+gGnPla+a   a l+ ++e+kl e+ +  Ge+l++ l+kl++  +++++vrG Gl+ +  + ++   g +a  lc  + +kGl++ p+  +++r+ PPlv++e e++ea++i++ +l
  MMETSP1137-20121227|3068_1  57 MNTYGRFKLAISHGEGCSLFDTEGKRYLDFAAGIATCTLGHADERLASAVSAQMRKVNHVSNLFYIPQQGELARRLLETNNLDRAFFCNSGAEANEAAIKLARKYAHDKRGVK--KPVIITAVNSFHGRTLATITATGQPKYQAGFGPLVPGFEYVPYNDVAALEETVRKFtgpklpfglgeEGELAAIMMEPLQGEGGIRPGSTEFFEAARRLCDETGALLMVDEVQTGVCRTGSFWAHQKLGVEVDVLTSAKALGGGV-PIGAMMCKTS-CDVFTPGTHATTFGGNPLACAAGNAVLDAIEEDKLLENVNARGEQLQAGLRKLQEtmPLITDVRGWGLIVGFELAPES--GITAAALCGEVLKKGLMTVPAGPSVLRMVPPLVVSEAEISEALSIVEVAL 452
                 567999999*****************************************************************************************************995..689************************************************99874222222222214579**********************************************************************9885.******9887.589**************************************************765589*****************99..9********************************************98765 PP

>> TIGR00700  GABAtrnsam: 4-aminobutyrate transaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  245.5   0.5   4.4e-76   1.7e-73      18     419 ..      66     453 ..      50     454 .. 0.87

  Alignments for each domain:
  == domain 1    score: 245.5 bits;  conditional E-value: 4.4e-76
   TIGR00700  18 laakaegaelkdvdGnrlidlaagiavlnvGhshPkvveavkrqveelthtafqvvpyesyvelaeklnaiaPgsgekkavllnsGaeavenavkiarkyt......grpgvvafsrgfhGrtnltmaltakvkPykiGfGPfapevyraPlpydyrdialdkqeslddelaaiealfvadveaeqvaavvlePvqGeGGfivpakelvaavaslckehgivliadevqtGfartGklfaieheddkPdlitvaksladGlPlsgvvGraeildapapGglGGtyaGnPlavaaalavldiieeeglieraeqigklvkdklielkeevpaigdvrglGamiavelvdpdttePdaal.aekiaaaalaaGlllltaGifGniirlltPltisdelldeglkileaala 419
                  + ++eg+ l d +G+r++d+aagia+ ++Gh + ++  av  q++++ h + ++   +   ela +l +   + +  +a + nsGaea e a+k+arky+      ++p +++  ++fhGrt  t++ t++ k y+ GfGP+ p    +P++      a+  +e++ + ++   +l     e  ++aa+++eP+qGeGG    + e+ +a ++lc+e g +l+ devqtG  rtG+++a ++ +++ d++t ak+l +G+P+ +++ ++   d  +pG    t++GnPla+aa  avld iee+ l e  +  g+ ++  l +l+e++p i+dvrg G ++  el       P+ ++ a+++  + l++Gl+ + aG    ++r+++Pl++s++ ++e+l+i+e al+
  MMETSP1137-20121227|3068_1  66 AISHGEGCSLFDTEGKRYLDFAAGIATCTLGHADERLASAVSAQMRKVNHVS-NLFYIPQQGELARRLLE---TNNLDRAFFCNSGAEANEAAIKLARKYAhdkrgvKKPVIITAVNSFHGRTLATITATGQPK-YQAGFGPLVPGFEYVPYND----VAAL-EETVRK-FTG-PKLPFGLGEEGELAAIMMEPLQGEGGIRPGSTEFFEAARRLCDETGALLMVDEVQTGVCRTGSFWAHQKLGVEVDVLTSAKALGGGVPIGAMMCKTS-CDVFTPGTHATTFGGNPLACAAGNAVLDAIEEDKLLENVNARGEQLQAGLRKLQETMPLITDVRGWGLIVGFELA------PESGItAAALCGEVLKKGLMTVPAG--PSVLRMVPPLVVSEAEISEALSIVEVALR 453
                 46789*********************************************87.55566677788877655...67889**********************64444336888999************99999865.***********99999864....4442.233332.222.234334446779*********************************************************************************9987.69***********************************************************************97......4444315678889999**9988887..58***********************9997 PP

>> TIGR00508  bioA: adenosylmethionine-8-amino-7-oxononanoate transaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  243.1   0.0   2.3e-75   8.7e-73      14     417 ..      64     451 ..      55     453 .. 0.92

  Alignments for each domain:
  == domain 1    score: 243.1 bits;  conditional E-value: 2.3e-75
   TIGR00508  14 plavekaegvyltdedgkeliDgisSwwvavhGhnhpelneaikeqleklehvifaglthepaieLaekLveilpeglekvffsdsGsvavEvalKmalqywqnkgekekkkflalengYHGdTlgamsvgdvelfhelfeellfeqvkvpapevalekkeeekeeevleeleklleehaeeiaalivEPlvqgagGmrvyspeyLkklrelcdeydvlliaDEiatGfgrtGklFacehagvtPDilclsKaltgGylplaatltteeiyeaflsdeeekaflHghtytgnplacavAlaslelleeeeilekvkeieaqlkeeleelke.lpkvkdvRvlGaigavelkeekeleerigekiqkkalekgvllRPlgn.viylmppyiiteeeleklveaikea 417
                  la++++eg+ l+d++gk+++D  + + +++ Gh++++l++a+++q++k++hv  + +   +  eLa++L+e+   +l++ ff++sG+ a E a+K+a +y + k   +k  +++  n++HG Tl+++  +++  +++ f +l++    vp+ +va  + ee+ ++ +  +l   l e + e+aa+++EP +qg gG+r  s e+++++r+lcde++ ll++DE+ tG+ rtG+++a ++ gv+ D+l+ +Kal gG +p+ a++++++  + f+ ++      H+ t+ gnplaca+++a l+ +ee+++le+v++  +ql+++l++l+e +p ++dvR  G+i+++el  e+     ++++++ ++l+kg++  P g  v+ ++pp++++e+e+++++++++ a
  MMETSP1137-20121227|3068_1  64 KLAISHGEGCSLFDTEGKRYLDFAAGIATCTLGHADERLASAVSAQMRKVNHVSNL-FYIPQQGELARRLLETN--NLDRAFFCNSGAEANEAAIKLARKYAHDKRGVKKPVIITAVNSFHGRTLATITATGQPKYQAGFGPLVPGFEYVPYNDVA--ALEETVRKFTGPKLPFGLGE-EGELAAIMMEP-LQGEGGIRPGSTEFFEAARRLCDETGALLMVDEVQTGVCRTGSFWAHQKLGVEVDVLTSAKALGGG-VPIGAMMCKTS-CDVFTPGT------HATTFGGNPLACAAGNAVLDAIEEDKLLENVNARGEQLQAGLRKLQEtMPLITDVRGWGLIVGFELAPESGI---TAAALCGEVLKKGLMTVPAGPsVLRMVPPLVVSEAEISEALSIVEVA 451
                 5789************************************************9765.44456679******987..9***************************99999********************************************975..44445445555666655555.58*********.7**************************************************************887.6******9987.57888887......********************************************98879******************99777...889****************96155688*************9998866 PP

>> TIGR03372  putres_am_tran: putrescine aminotransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  233.3   0.7   2.9e-72   1.1e-69      67     428 ..      73     438 ..      51     451 .. 0.86

  Alignments for each domain:
  == domain 1    score: 233.3 bits;  conditional E-value: 2.9e-72
   TIGR03372  67 ntlvdtqgqeyldclggygifnvghrnpvvvaavesqlakqplhsqelldplrallaktlaaltpgklkysffsnsgtesveaalklakayqs.prg..kytfiaasgafhgkslgalsataksafrkpfmpllpgfrhvafgdieamlkalqeck..k....tgd..dvaavilepiqgeggvilppenyltavrklcdevgallildevqtgmgrtgkmfacehenvqpdilclakalgggvmpigatvateevfsvlfenpflhtttfggnplacaaalatvnvlleknlpeqaeikgellldglrqlaaeypdlvieargkgllqaiefvdne.i.gyafakelfrrrvlvagtlnnaksvrieppltlti 428
                  +l dt+g+ yld   g     +gh +  + +av +q+ k    s+ +  p ++ la+ l  l   +l  +ff+nsg+e+ eaa+kla+ y    rg  k  +i+a  +fhg++l +++at ++ ++  f pl+pgf++v++ d+ a+ +++++    k     g+  ++aa+++ep+qgegg+     +++ a r+lcde gall++devqtg+ rtg ++a ++ +v+ d+l  akalgggv piga ++  +        p  h+ttfggnplacaa  a ++ + e++l e+ + +ge l  glr+l    p l+ + rg gl+   e+  +  i   a++ e++++ ++   +      +r+ ppl ++ 
  MMETSP1137-20121227|3068_1  73 CSLFDTEGKRYLDFAAGIATCTLGHADERLASAVSAQMRKVNHVSNLFYIPQQGELARRL--LETNNLDRAFFCNSGAEANEAAIKLARKYAHdKRGvkKPVIITAVNSFHGRTLATITATGQPKYQAGFGPLVPGFEYVPYNDVAALEETVRKFTgpKlpfgLGEegELAAIMMEPLQGEGGIRPGSTEFFEAARRLCDETGALLMVDEVQTGVCRTGSFWAHQKLGVEVDVLTSAKALGGGV-PIGAMMCKTS---CDVFTPGTHATTFGGNPLACAAGNAVLDAIEEDKLLENVNARGEQLQAGLRKLQETMP-LITDVRGWGLIVGFELAPESgItAAALCGEVLKKGLMTVPA--GPSVLRMVPPLVVSE 438
                 5799**********************************999999999999********98..7889************************97525665467899999********************************************9987522223223432279*************99999*******************************************************8.****997653...2233699**********************************************87777.9**************97543141345667777777664432..345678888887765 PP

>> TIGR00709  dat: 2,4-diaminobutyrate 4-transaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  218.8   0.3     6e-68   2.3e-65      19     440 ..      61     459 ..      48     460 .] 0.88

  Alignments for each domain:
  == domain 1    score: 218.8 bits;  conditional E-value: 6e-68
   TIGR00709  19 rklplafakakGckvtdveGkeyldflaGaGtlalGhndealkqklkdvldsglvlhtldlttklkdafieallaillkpkeeyilqftGpsGadaveaalklakkyt....G..rsnvisfsgGfhGmtiGalaltGnlsaknavenllsgvqflpydheyreplglggeagadavieyienfledvesGvdkpaavileaiqGeGGvvaasveflrkirevtrkrdillildevqaGvarsGklfafehaGiepdvvvlskavGGglplavlaikkefdafqpaehtGtfrGnqlalatGlealeilkdenlaknaqergerltsalddlikeypeiknvrGrGlmlGieivderkskdaigaypadselaaaiqkacfenklllekgGregevvrllcpvtiddeeleevlsrlkqaveealaev 440
                  ++ la+++ +Gc ++d eGk+yldf aG  t +lGh de l  ++   + +   +  l +  + +++++  ll+       +    f   sGa+a+eaa+kla+ky+    G  +  +i+  + fhG t  +++ tG    + + + l++g +++py++              ++v ++    l  +       aa+++e +qGeGG+   s+ef++  r+++++ + ll++devq+Gv+r+G ++a ++ G+e dv+  +ka+GGg+p+  ++ k   d f p+ h+ tf Gn la a+G ++l+ + +++l +n++ rge+l + l++l    p i +vrG Gl++G e + e                aaa+ +  ++++l+   +G   +v+r+++p+++++ e+ e ls+++ a+ e ++++
  MMETSP1137-20121227|3068_1  61 GRFKLAISHGEGCSLFDTEGKRYLDFAAGIATCTLGHADERLASAVSAQMRKVNHVSNL-FYIPQQGELARRLLETN-----NLDRAFFCNSGAEANEAAIKLARKYAhdkrGvkKPVIITAVNSFHGRTLATITATGQPKYQAGFGPLVPGFEYVPYNDVAAL---------EETVRKFTGPKLPFGLGEEGELAAIMMEPLQGEGGIRPGSTEFFEAARRLCDETGALLMVDEVQTGVCRTGSFWAHQKLGVEVDVLTSAKALGGGVPIGAMMCKTSCDVFTPGTHATTFGGNPLACAAGNAVLDAIEEDKLLENVNARGEQLQAGLRKLQETMPLITDVRGWGLIVGFELAPES------------GITAAALCGEVLKKGLMTVPAG--PSVLRMVPPLVVSEAEISEALSIVEVALRELVVAS 459
                 45899*****************************************9998876555555.45788888887776543.....344457778****************7332222234689999***********************************998766.........34445555554444444444679************************************************************************************************************************************************************99998............456999*********9987776..68**************************9998876 PP

>> TIGR02407  ectoine_ectB: diaminobutyrate--2-oxoglutarate aminotransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  202.0   0.0     7e-63   2.6e-60      14     411 ..      60     453 ..      49     454 .. 0.87

  Alignments for each domain:
  == domain 1    score: 202.0 bits;  conditional E-value: 7e-63
   TIGR02407  14 srsfptvfekakgaklldedgkeyidflagaGalnyGhnneklkealldylaedgivhsldmateakkefletfeevilkPreldykvqftgPtGtnavesalklarkvt......grenvvaftnafhGmslgslavtgnkskreeagvslsnvvrlPydgyldeevdslayleklledsssGvdlPaaviletvqgeGGlnvaskeWlrsleklcrehdillivddiqaGcGrtGtffsfeeagikPdivclsksisGiGlPlalvllkpeldvwkPgehnGtfrGnnlafvaataalekyWkddelekavkkksekvkerleeivekypelkkearGrGllqGlevkked..lakkvakkafekgliietsGaedevlkllpaltideeelekGleileqale 411
                   +f   +++++g+ l d++gk+y+df ag  +   Gh +e+l +a+ + +++ + v  l      ++     + + +l+  +ld    f    G++a e+a+klark+       ++  +++  n+fhG +l++++ tg+ +++++ g        +Py++ +  e    ++    l    +     aa+++e +qgeGG+   s+e++++ ++lc e++ ll+vd++q+G+ rtG+f++ ++ g++ d+++ +k+++G G+P+  ++ k  +dv++Pg h+ tf Gn la  a++a+l++  ++d+l ++v+ ++e++++ l+++ e++p l++++rG Gl+ G e++ e+  +a+ ++ ++++kgl+   +G++  vl+++p+l ++e e+++ l+i+e al+
  MMETSP1137-20121227|3068_1  60 YGRFKLAISHGEGCSLFDTEGKRYLDFAAGIATCTLGHADERLASAVSAQMRKVNHVSNL--FYIPQQG---ELARRLLETNNLDR--AFFCNSGAEANEAAIKLARKYAhdkrgvKKPVIITAVNSFHGRTLATITATGQPKYQAGFGPLVPGFEYVPYNDVAALEETVRKFTGPKLPFGLGEEGELAAIMMEPLQGEGGIRPGSTEFFEAARRLCDETGALLMVDEVQTGVCRTGSFWAHQKLGVEVDVLTSAKALGG-GVPIGAMMCKTSCDVFTPGTHATTFGGNPLACAAGNAVLDA-IEEDKLLENVNARGEQLQAGLRKLQETMP-LITDVRGWGLIVGFELAPESgiTAAALCGEVLKKGLMTVPAGPS--VLRMVPPLVVSEAEISEALSIVEVALR 453
                 4468899999*************************************9988765555555..5455543...578999******96..466779**************8622222134468999*************************99***********99976444455555555444444578************************************************************************.****************************************6.89999******************988865.7899*********9997644227999*************99996..***********************9986 PP

>> TIGR03251  LAT_fam: L-lysine 6-transaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  177.1   0.0   2.4e-55     9e-53      22     432 ..      66     452 ..      54     453 .. 0.84

  Alignments for each domain:
  == domain 1    score: 177.1 bits;  conditional E-value: 2.4e-55
   TIGR03251  22 dleksrGsvlvdardGrryldlfsffassalGmnhPaladdaefrerlaavavnkpsnsdvytvemarfvdtfarvlvdpalPhlffieGGalavenalktafdwksrkneargieaelGtkvlhlrqafhGrsGytlsltnt.dPrktarfPkfdwPridaPkltfpldaeeldavkaleeea..laqakaafa.eeeddiaaliiePiqgeGGdnhlrpeflralrklcdehdallvldevqtGvGltGkawayqqlgvkPdvvafGkktqvcGilagrrvdevadnvfkvssrlnstfGGnlvdmvratrileiieeerlvdrareqGehllarleelaaefpklvsnprGrGllcafdlpste..lrdelvkalyrekvlvlgaGekairfrpaltvseeeidealdairrvl 432
                  +++ +G+ l+d  +G+ryld+ + +a+ +lG+    l   +++ +++ +  vn +sn   y  +     +   r+l  ++l  +ff + Ga a e a+k a  +     ++rg+++ +   ++   ++fhGr+  t++   t +P+  a f  +       P +++       + v+alee+   ++  k  f+  ee ++aa+++eP+qgeGG +   +ef++a r+lcde  all++devqtGv  tG++wa+q+lgv+ dv++  k +  +G+  g  + + +++vf+ ++   +tfGGn       + +l+ iee++l+++ + +Ge+l+a l++l +  p l++++rG Gl++ f+l+ ++  +  +l  ++ +++++ ++aG + +r+ p+l+vse+ei eal++++ +l
  MMETSP1137-20121227|3068_1  66 AISHGEGCSLFDT-EGKRYLDFAAGIATCTLGHADERL--ASAVSAQMRK--VNHVSNLF-YIPQQG---ELARRLLETNNLDRAFFCNSGAEANEAAIKLARKYA---HDKRGVKKPV---IITAVNSFHGRTLATITA--TgQPKYQAGFGPL------VPGFEY----VPYNDVAALEETVrkFTGPKLPFGlGEEGELAAIMMEPLQGEGGIRPGSTEFFEAARRLCDETGALLMVDEVQTGVCRTGSFWAHQKLGVEVDVLTSAK-ALGGGVPIGAMMCKTSCDVFT-PGTHATTFGGNPLACAAGNAVLDAIEEDKLLENVNARGEQLQAGLRKLQETMP-LITDVRGWGLIVGFELAPESgiTAAALCGEVLKKGLMTVPAGPSVLRMVPPLVVSEAEISEALSIVEVAL 452
                 5677899****96.7***********************..5677777765..68898864.433444...44569999***********************96543...3456666665...888899******998755..5578888877644......344442....122235555554301333445555245679*****************************************************************9765.6779****************6.677799***********************************************.***************9755422678899**************************************9887 PP

>> TIGR00713  hemL: glutamate-1-semialdehyde-2,1-aminomutase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  138.2   0.0   1.7e-43   6.4e-41      33     351 ..      66     392 ..      55     408 .. 0.82

  Alignments for each domain:
  == domain 1    score: 138.2 bits;  conditional E-value: 1.7e-43
   TIGR00713  33 fvekakgallldvdgneyiDyvlsyGplilGhahekvveavkealerGl..syGapteaeielakeiiervksvekvRlvnsGteatmsavRlaRgftg......rdkiikfeGcyhGhaDalLvkagsgaatlglpsslgvpeeaakltlvlpyndlealeevleel...........geeiagvivepvagnmgvvlpkkeflealrelteengallilDevvtGF.RvalegaqelygvepDlvvlGkilggGlPvgalggrreimerlaPeGkvyqaGtlsgnplavaaGlatlkaleeeevykeleelaeklaegleevleekgievevvrvgs 351
                  +++++g+ l+d++g++y+D+ ++  +  lGha+e++  av+ ++++    s     ++  ela+ ++e+    ++  + nsG+ea  +a++laR ++       +  ii    ++hG + a +++  +g  +++    +      +     +pynd+ alee+++++           + e+a++++ep+ g  g+ + ++ef ea r+l++e+gall++Dev tG  R     a++  gve D+++  k lggG+P+ga+  + +  + ++P      a t+ gnpla aaG a l a+ee+++ +++++  e+l++gl+++ e+  + ++v   g 
  MMETSP1137-20121227|3068_1  66 AISHGEGCSLFDTEGKRYLDFAAGIATCTLGHADERLASAVSAQMRKVNhvSNLFYIPQQGELARRLLETN-NLDRAFFCNSGAEANEAAIKLARKYAHdkrgvkKPVIITAVNSFHGRTLATITA--TGQPKYQAGFGP-----LVPGFEYVPYNDVAALEETVRKFtgpklpfglgeEGELAAIMMEPLQGEGGIRPGSTEFFEAARRLCDETGALLMVDEVQTGVcRTGSFWAHQKLGVEVDVLTSAKALGGGVPIGAMMCKTS-CDVFTPGT---HATTFGGNPLACAAGNAVLDAIEEDKLLENVNARGEQLQAGLRKLQETMPLITDVRGWGL 392
                 5899**************************************999985411334456677789*****975.568889******************986222221456777788888887555553..333344333344.....44455689***********9986333333333223489********************************************648888889999************************9987.59999965...69*****************************************99988877777766665 PP

>> TIGR00699  GABAtrns_euk: 4-aminobutyrate aminotransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.2   0.0   3.2e-05     0.012      46     151 ..      69     166 ..      49     172 .. 0.74
   2 ?    0.9   0.0     0.085        32     175     196 ..     170     191 ..     162     209 .. 0.81
   3 !   85.1   0.0   2.5e-27   9.4e-25     252     451 ..     240     439 ..     231     451 .. 0.87

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 3.2e-05
   TIGR00699  46 kslGnylvdvdGnvlldlyaqiasipiGynnPallkvakspevatalinrPalGnfpsk.dlakilkegilkvaPkgldsvysalaGsdanelafkaaflyyrskkr 151
                 +  G  l d +G ++ld  a ia+ ++G+ +  l+ ++  +     + +   l  +p++ +la+ l e         ld++++  +G++ane a k+a  y ++k r
  MMETSP1137-20121227|3068_1  69 HGEGCSLFDTEGKRYLDFAAGIATCTLGHADERLASAVSAQMRK--VNHVSNLFYIPQQgELARRLLE------TNNLDRAFFCNSGAEANEAAIKLARKYAHDK-R 166
                 55688899**************************9987654322..2222344444443255555544......4678999***************998765544.4 PP

  == domain 2    score: 0.9 bits;  conditional E-value: 0.085
   TIGR00699 175 elavlsfkaafhGrlfgslstt 196
                 +  +++  ++fhGr+++++++t
  MMETSP1137-20121227|3068_1 170 KPVIITAVNSFHGRTLATITAT 191
                 556888899*******998776 PP

  == domain 3    score: 85.1 bits;  conditional E-value: 2.5e-27
   TIGR00699 252 vaaiivePiqseGGdnhasddffrklrditkkhnvvfivdevqtGvGatGklwahehwnleePadlvtfskklqta...GyffhdealrPnkpyrqfntwlGdPsralllreiieeikdkdllenvaavGdylyagleelakkyPeklqnlrgkGrGtfiawdt..pdeakrdklllklklkGvniGGcgvkavrlrPslvfqkh 451
                 +aai++eP+q eGG    s +ff+  r +    + + +vdevqtGv  tG +wah++ ++e  +d++t +k l  +   G    ++      p  +  t+ G+P      +++++ i++ +llenv+a G+ l agl +l++  P  + ++r  G G  + +++  +++ +   l+ ++ +kG+    +g + +r+ P lv  + 
  MMETSP1137-20121227|3068_1 240 LAAIMMEPLQGEGGIRPGSTEFFEAARRLCDETGALLMVDEVQTGVCRTGSFWAHQKLGVE--VDVLTSAKALGGGvpiGAMMCKTSCDVFTPGTHATTFGGNPLACAAGNAVLDAIEEDKLLENVNARGEQLQAGLRKLQETMP-LITDVR--GWGLIVGFELapESGITAAALCGEVLKKGLMTVPAGPSVLRMVPPLVVSEA 439
                 79******************************************************98887..899997766543333355666666666789999************************************************9.5899**..778888888732456678899***********************9998775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (460 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       106  (0.0258411); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                        20  (0.00487567); expected 4.1 (0.001)
Passed Fwd filter:                        11  (0.00268162); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.57u 0.15s 00:00:00.72 Elapsed: 00:00:01.28
# Mc/sec: 474.34
//
Query:       MMETSP1137-20121227|3069_1  [L=555]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00013   19.3  15.8     0.0003   18.1   1.5    2.8  3  TIGR02349 DnaJ_bact: chaperone protein DnaJ


Domain annotation for each model (and alignments):
>> TIGR02349  DnaJ_bact: chaperone protein DnaJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   1.5   7.3e-08    0.0003      11      36 ..      95     122 ..      82     158 .. 0.69
   2 !   11.3   0.3   8.7e-06     0.036      31     109 ..     159     231 ..     134     253 .. 0.73
   3 ?   -5.3   2.9      0.98     4e+03      24      76 ..     308     362 ..     303     396 .. 0.57

  Alignments for each domain:
  == domain 1    score: 18.1 bits;  conditional E-value: 7.3e-08
   TIGR02349  11 dAseeeikkAYrklakkyHPDrnkg..e 36 
                  As+ee++kAYr+l+ ++HPD++++   
  MMETSP1137-20121227|3069_1  95 RASAEELRKAYRRLVLTHHPDKKAAagA 122
                 59*******************9985331 PP

  == domain 2    score: 11.3 bits;  conditional E-value: 8.7e-06
   TIGR02349  31 DrnkgekeaeekfkeineAyevLsdeekraqYDqfghagleggaggggagfegfeasefgdigdifeeffgggggsgrr 109
                 D+ + e+e +  fk  ++A e L + e r++YD +  + +++++ +   +f+ + ++  +++ ++f+ +f ++ +++ +
  MMETSP1137-20121227|3069_1 159 DIDS-EDEEDSEFKLLTRAWELLGNAETRRAYDSV--DYFNDNMPQ---SFRPKPERGPDHFYRVFGPVFRRQAKFSVE 231
                 4445.6678889*********************94..555554433...344444445677888888888877665544 PP

  == domain 3    score: -5.3 bits;  conditional E-value: 0.98
   TIGR02349  24 lakkyHPDrnkgekeaeekfkeineAye..vLsdeekraqYDqfghagleggagg 76 
                 la ++ P ++k+++ea +   +++ A e  +  ++++r++  + + a+ +++ + 
  MMETSP1137-20121227|3069_1 308 LAYEHDPRVQKAREEAAAEKARVKAAREaaIQAEKDQRNAVQEAALAAQRQADAA 362
                 7888889999987777666666777766114444444555555444444433322 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (555 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       364  (0.0887372); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.16s 00:00:00.65 Elapsed: 00:00:00.53
# Mc/sec: 1382.15
//
Query:       MMETSP1137-20121227|3070_1  [L=224]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (224 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        68  (0.0165773); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.14s 00:00:00.33 Elapsed: 00:00:00.27
# Mc/sec: 1095.02
//
Query:       MMETSP1137-20121227|3073_1  [L=109]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (109 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        98  (0.0238908); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.14s 00:00:00.30 Elapsed: 00:00:00.28
# Mc/sec: 496.10
//
Query:       MMETSP1137-20121227|3074_1  [L=385]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.5e-61  202.4   0.4    1.6e-60  201.6   0.2    1.4  1  TIGR01172 cysE: serine O-acetyltransferase
    8.3e-17   59.0   1.0    1.4e-16   58.2   0.7    1.3  1  TIGR04016 WcaB: colanic acid biosynthesis acetyltransferase WcaB
    6.9e-13   46.5   8.1    2.4e-12   44.7   4.4    2.5  2  TIGR03570 NeuD_NnaD: sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family
    9.8e-11   39.5   5.4    1.5e-10   38.9   3.8    1.2  1  TIGR03532 DapD_Ac: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase
      3e-07   27.5   2.3    0.00011   19.1   0.2    2.1  2  TIGR01853 lipid_A_lpxD: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
    9.3e-07   26.7   1.2    9.3e-07   26.7   0.9    2.1  2  TIGR03308 phn_thr-fam: phosphonate metabolim protein, transferase hexapeptide repeat family
     0.0002   19.1   2.6     0.0078   13.9   1.8    2.2  1  TIGR04008 WcaF: colanic acid biosynthesis acetyltransferase WcaF
    0.00068   16.8   0.2      0.036   11.2   0.0    2.2  2  TIGR01852 lipid_A_lpxA: acyl-[acyl-carrier-protein]-UDP-N-acetylglucosamine O-acyltransferase
      0.001   15.8   1.9     0.0067   13.1   1.3    2.1  1  TIGR01173 glmU: UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase
     0.0017   14.5   1.7     0.0027   13.9   1.2    1.2  1  TIGR02353 NRPS_term_dom: non-ribosomal peptide synthetase terminal domain of unknown function
  ------ inclusion threshold ------
      0.047   11.2   2.4       0.13    9.8   1.2    2.1  2  TIGR02287 PaaY: phenylacetic acid degradation protein PaaY
      0.066    9.9   3.6       0.74    6.4   0.3    2.2  2  TIGR03992 Arch_glmU: UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase
        0.3    7.7   7.2       0.47    7.1   5.0    1.2  1  TIGR03536 DapD_gpp: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase


Domain annotation for each model (and alignments):
>> TIGR01172  cysE: serine O-acetyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  201.6   0.2   5.2e-63   1.6e-60       2     162 .]      92     255 ..      91     255 .. 0.96

  Alignments for each domain:
  == domain 1    score: 201.6 bits;  conditional E-value: 5.2e-63
   TIGR01172   2 kedlkavlerDPaaesalevlllykglhallayrlahalykrk...lkllarllselvrvltgvdihPaakigrgvliDhatGvviGetavigddvsiyqgvtLGgtgkekgkRhPtvkegvvigagakvLGnievgenakiGansvvlkdvpaeatvvGvpar 162
                 ++dl+av++rDPaa+  l+ +l++kg++a++a+r+a++l++++    + la  l+ +++ + ++dihPaa+ig g++iDh+tGvviGeta ig d+s+++gvtLG+tgk +g+RhP++++++++gaga+++Gni++g++ kiGa+svvlk++pa++t++G pa+
  MMETSP1137-20121227|3074_1  92 RADLSAVVDRDPAADGPLNCMLNFKGFKAIQAHRIANVLWHSGgrgDRKLALWLQARASEVWSLDIHPAASIGGGLMIDHGTGVVIGETAAIGTDCSLLHGVTLGATGKDRGDRHPKLGNDILVGAGASIIGNIRIGDGCKIGASSVVLKPLPAGVTAIGAPAK 255
                 78**************************************975222689*****************************************************************************************************************97 PP

>> TIGR04016  WcaB: colanic acid biosynthesis acetyltransferase WcaB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.2   0.7   4.5e-19   1.4e-16      40     142 ..     153     256 ..     139     259 .. 0.92

  Alignments for each domain:
  == domain 1    score: 58.2 bits;  conditional E-value: 4.5e-19
   TIGR04016  40 fgyeiqaaatigrrftihhgyavvinknvvagddftirhgvtignrgadsl.acpvigngvelganvillgditignnvtigagsvvldsipdnalvvgekarv 142
                 +  +i+ aa+ig  + i hg  vvi  +   g d ++ hgvt+g  g d     p++gn++ +ga   ++g+i ig+   iga svvl  +p     +g  a++
  MMETSP1137-20121227|3074_1 153 WSLDIHPAASIGGGLMIDHGTGVVIGETAAIGTDCSLLHGVTLGATGKDRGdRHPKLGNDILVGAGASIIGNIRIGDGCKIGASSVVLKPLPAGVTAIGAPAKI 256
                 677999******************************************975268**************************************999998887765 PP

>> TIGR03570  NeuD_NnaD: sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.0       4.7   1.5e+03      35      67 ..      25      58 ..      21      62 .. 0.61
   2 !   44.7   4.4   7.5e-15   2.4e-12     121     202 .]     172     255 ..      89     255 .. 0.84

  Alignments for each domain:
  == domain 1    score: -3.6 bits;  conditional E-value: 4.7
   TIGR03570 35 kqgkevdglpvlgkledlekl.kkeeedlvvaiG 67
                + ++++++lp+++++ + + + +++ e++v+ai 
  MMETSP1137-20121227|3074_1 25 EAEQTCKDLPIMRRMMQDLITeQDSLEHAVIAIV 58
                4445688888887765333333666777888875 PP

  == domain 2    score: 44.7 bits;  conditional E-value: 7.5e-15
   TIGR03570 121 gdnviintgavveHdceigdfvhiapgatlsG..gvkigegvfiGagAtviqgvtIgkgavvGaGavVvkdipenavvvGvPak 202
                 g +v+i   a ++ dc + + v++ +     G  + k+g++ ++GagA++i +++Ig+g+ +Ga +vV+k +p++ +++G Pak
  MMETSP1137-20121227|3074_1 172 GTGVVIGETAAIGTDCSLLHGVTLGATGKDRGdrHPKLGNDILVGAGASIIGNIRIGDGCKIGASSVVLKPLPAGVTAIGAPAK 255
                 4456666666666666666666666666666622457**********************************************8 PP

>> TIGR03532  DapD_Ac: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.9   3.8   4.9e-13   1.5e-10     116     213 ..     160     259 ..     154     269 .. 0.91

  Alignments for each domain:
  == domain 1    score: 38.9 bits;  conditional E-value: 4.9e-13
   TIGR03532 116 GaeiGegtmidm..navlGgraivGknvhiGaGavlaGvieppsakpvvieddvliGanavileGvkvGkGavvaaGaiviedvpentvvaGvpakvike 213
                  a iG g mid   ++v+G  a +G ++ +  G  l    +    +  ++ +d+l+Ga a i+  +++G G+ + a ++v++ +p+ +   G+pak++ +
  MMETSP1137-20121227|3074_1 160 AASIGGGLMIDHgtGVVIGETAAIGTDCSLLHGVTLGATGKDRGDRHPKLGNDILVGAGASIIGNIRIGDGCKIGASSVVLKPLPAGVTAIGAPAKIVGS 259
                 689********72268*****************9999888888888889************************************************965 PP

>> TIGR01853  lipid_A_lpxD: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.1   0.1   0.00076      0.24     122     156 ..     160     196 ..     146     200 .. 0.66
   2 !   19.1   0.2   3.5e-07   0.00011     256     303 ..     208     255 ..     206     268 .. 0.94

  Alignments for each domain:
  == domain 1    score: 8.1 bits;  conditional E-value: 0.00076
   TIGR01853 122 nveiGenvkI..gpgvvigddvkigdesviyanvviy 156
                  ++iG + +I  g+gvvig+   ig ++ +  +v++ 
  MMETSP1137-20121227|3074_1 160 AASIGGGLMIdhGTGVVIGETAAIGTDCSLLHGVTLG 196
                 4556666666334567777777777777777777664 PP

  == domain 2    score: 19.1 bits;  conditional E-value: 3.5e-07
   TIGR01853 256 kiGrnvilgGqvgvagHleigdkvvigaksgvsksveenkkyggiPar 303
                 k+G+ +++g  +++ g ++igd   iga s+v k ++++ +  g+Pa+
  MMETSP1137-20121227|3074_1 208 KLGNDILVGAGASIIGNIRIGDGCKIGASSVVLKPLPAGVTAIGAPAK 255
                 78****************************************999986 PP

>> TIGR03308  phn_thr-fam: phosphonate metabolim protein, transferase hexapeptide repeat family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.4      0.73   2.3e+02     119     144 ..     171     186 ..     151     200 .. 0.53
   2 !   26.7   0.9     3e-09   9.3e-07     103     159 ..     201     257 ..     196     276 .. 0.92

  Alignments for each domain:
  == domain 1    score: -0.7 bits;  conditional E-value: 0.73
   TIGR03308 119 hGavilPgvtiGnGavvaagavvtkd 144
                 h          G+G v++  a +  d
  MMETSP1137-20121227|3074_1 171 H----------GTGVVIGETAAIGTD 186
                 2..........333333333333333 PP

  == domain 2    score: 26.7 bits;  conditional E-value: 3e-09
   TIGR03308 103 arkakrvtiGhdvWiGhGavilPgvtiGnGavvaagavvtkdvasytivaGvpakli 159
                  r +++ ++G d+ +G Ga i+ +++iG+G  ++a++vv k +++     G+pak++
  MMETSP1137-20121227|3074_1 201 DRGDRHPKLGNDILVGAGASIIGNIRIGDGCKIGASSVVLKPLPAGVTAIGAPAKIV 257
                 57889999*************************************99999****987 PP

>> TIGR04008  WcaF: colanic acid biosynthesis acetyltransferase WcaF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   1.8   2.5e-05    0.0078      92     175 ..     175     257 ..     153     260 .. 0.69

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 2.5e-05
   TIGR04008  92 itigahsvisqksylctgshdyaskhfdinatpivigekcwlatdvfvapgvtigdgtvvgarssvfkslpankicrgnpavvv 175
                 + ig  + i   + l  g    a+ +   + +p  +g+ + + +   +   + igdg  +ga s v+k lpa + + g pa++v
  MMETSP1137-20121227|3074_1 175 VVIGETAAIGTDCSLLHGVTLGATGKDRGDRHP-KLGNDILVGAGASIIGNIRIGDGCKIGASSVVLKPLPAGVTAIGAPAKIV 257
                 555555555555555555544444333333333.4577777777777888899****************************997 PP

>> TIGR01852  lipid_A_lpxA: acyl-[acyl-carrier-protein]-UDP-N-acetylglucosamine O-acyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.0      0.03       9.4       1      62 [.     157     196 ..     155     203 .. 0.45
   2 !   11.2   0.0   0.00011     0.036      11      71 ..     207     272 ..     204     280 .. 0.76

  Alignments for each domain:
  == domain 1    score: 3.2 bits;  conditional E-value: 0.03
   TIGR01852   1 ihptaiieegael..gedveigpfavvgkevkigegvelkshvviegattiGentkvfpgAviG 62 
                 ihp+a i  g  +  g++v ig+ a +g++ ++ +gv+                        +G
  MMETSP1137-20121227|3074_1 157 IHPAASIGGGLMIdhGTGVVIGETAAIGTDCSLLHGVT------------------------LG 196
                 44444444444442223344444444444444444444........................44 PP

  == domain 2    score: 11.2 bits;  conditional E-value: 0.00011
   TIGR01852  11 aelgedveigpfavvgkevkigegvelkshvvi.....egattiGentkvfpgAviGeepQdlkyk 71 
                  +lg+d+ +g+ a +  +++ig+g+++ +  v+      g t iG+ +k++ +  i +++  l ++
  MMETSP1137-20121227|3074_1 207 PKLGNDILVGAGASIIGNIRIGDGCKIGASSVVlkplpAGVTAIGAPAKIVGSSPIKRKSFRLDFA 272
                 579999999999999999999999999876665333334789999999888888777777776666 PP

>> TIGR01173  glmU: UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.1   1.3   2.1e-05    0.0067     392     438 ..     207     253 ..     161     265 .. 0.84

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 2.1e-05
   TIGR01173 392 tvigddvfiGsdsqlvaPvkvgdgatiaaGstvtkdvpegaLalsra 438
                  ++g+d+ +G+ ++++  +++gdg  i+a s+v k  p+g  a++++
  MMETSP1137-20121227|3074_1 207 PKLGNDILVGAGASIIGNIRIGDGCKIGASSVVLKPLPAGVTAIGAP 253
                 578999999**********************9999999998888765 PP

>> TIGR02353  NRPS_term_dom: non-ribosomal peptide synthetase terminal domain of unknown function
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   1.2   8.6e-06    0.0027     114     216 ..     162     260 ..     155     269 .. 0.87

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 8.6e-06
   TIGR02353 114 kiGkevvies.lvpvvtdLltiGagvivekevdllgyrvergrlriGsvrvgddafvGtrsvldidtaiGdraqleasSalasgqsipegerWaGsPAqkvgaa 216
                  iG + +i   + +v+ +   iG + ++ ++v+l +   +rg  +    ++g+d +vG+ + +  + +iGd+ +++asS + +   +p+g    G+PA+ vg  
  MMETSP1137-20121227|3074_1 162 SIGGGLMIDHgTGVVIGETAAIGTDCSLLHGVTLGATGKDRGDRH---PKLGNDILVGAGASIIGNIRIGDGCKIGASSVVLK--PLPAGVTAIGAPAKIVGSS 260
                 577777776558888888899999999999999999999999865...59***************************999988..9*************99865 PP

>> TIGR02287  PaaY: phenylacetic acid degradation protein PaaY
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   1.2   0.00042      0.13      86     139 ..     206     257 ..     154     268 .. 0.72
   2 ?   -3.0   0.0       3.4   1.1e+03     154     170 ..     322     338 ..     297     340 .. 0.79

  Alignments for each domain:
  == domain 1    score: 9.8 bits;  conditional E-value: 0.00042
   TIGR02287  86 gcrvgrnalvgmnavvmdgavigessivaasafvkagleiaaqvlvvgspakvv 139
                   ++g++ lvg  a ++ +  ig+ + ++as+ v     ++a v  +g+pak+v
  MMETSP1137-20121227|3074_1 206 HPKLGNDILVGAGASIIGNIRIGDGCKIGASSVVLK--PLPAGVTAIGAPAKIV 257
                 3578999************************99965..579999999***9987 PP

  == domain 2    score: -3.0 bits;  conditional E-value: 3.4
   TIGR02287 154 treyqdlaarslqtlke 170
                 ++ y++l  r+  tl+e
  MMETSP1137-20121227|3074_1 322 STVYHSLDDRCEGTLTE 338
                 45799999999998865 PP

>> TIGR03992  Arch_glmU: UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   0.3    0.0024      0.74     359     384 ..     173     198 ..     167     203 .. 0.92
   2 ?    4.3   0.1     0.011       3.4     252     281 ..     210     239 ..     206     267 .. 0.70

  Alignments for each domain:
  == domain 1    score: 6.4 bits;  conditional E-value: 0.0024
   TIGR03992 359 lGaivGddvktginvsilpGvkigae 384
                  G+++G+++ +g ++s+l Gv++ga+
  MMETSP1137-20121227|3074_1 173 TGVVIGETAAIGTDCSLLHGVTLGAT 198
                 59*********************985 PP

  == domain 2    score: 4.3 bits;  conditional E-value: 0.011
   TIGR03992 252 eegavvrsgayieGpvligknaeiGPnayi 281
                 +++ +v +ga i G + ig++++iG  + +
  MMETSP1137-20121227|3074_1 210 GNDILVGAGASIIGNIRIGDGCKIGASSVV 239
                 677788999999999999999999988765 PP

>> TIGR03536  DapD_gpp: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   5.0    0.0015      0.47     222     278 ..     172     236 ..     158     243 .. 0.77

  Alignments for each domain:
  == domain 1    score: 7.1 bits;  conditional E-value: 0.0015
   TIGR03536 222 saGvlvGkGsdlGGGastmG..tlsGG....GnivisvGeecllGanaGi..GiplGdrctveaG 278
                  +Gv++G+ + +G  +s +   tl       G+   ++G++ l+Ga a i   i +Gd c++ a 
  MMETSP1137-20121227|3074_1 172 GTGVVIGETAAIGTDCSLLHgvTLGATgkdrGDRHPKLGNDILVGAGASIigNIRIGDGCKIGAS 236
                 57***************8852344433223367889************975459*******9875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (385 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       108  (0.0263286); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                        24  (0.0058508); expected 4.1 (0.001)
Passed Fwd filter:                        13  (0.00316919); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.38u 0.19s 00:00:00.57 Elapsed: 00:00:00.41
# Mc/sec: 1239.41
//
Query:       MMETSP1137-20121227|3076_1  [L=275]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (275 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        69  (0.0168211); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.12s 00:00:00.32 Elapsed: 00:00:00.33
# Mc/sec: 1099.91
//
Query:       MMETSP1137-20121227|3077_1  [L=317]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (317 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        43  (0.0104827); expected 82.0 (0.02)
Passed bias filter:                       41  (0.00999512); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.16s 00:00:00.40 Elapsed: 00:00:00.42
# Mc/sec: 996.20
//
Query:       MMETSP1137-20121227|3078_1  [L=455]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (455 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        58  (0.0141394); expected 82.0 (0.02)
Passed bias filter:                       38  (0.00926377); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.15s 00:00:00.46 Elapsed: 00:00:00.38
# Mc/sec: 1580.40
//
Query:       MMETSP1137-20121227|3079_1  [L=111]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (111 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        35  (0.00853242); expected 82.0 (0.02)
Passed bias filter:                       35  (0.00853242); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.47
# Mc/sec: 311.72
//
Query:       MMETSP1137-20121227|3080_1  [L=185]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (185 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        58  (0.0141394); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.15s 00:00:00.32 Elapsed: 00:00:00.32
# Mc/sec: 763.06
//
Query:       MMETSP1137-20121227|3081_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        48  (0.0117016); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.24
# Mc/sec: 280.48
//
Query:       MMETSP1137-20121227|3082_1  [L=401]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (401 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        70  (0.0170648); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.12s 00:00:00.41 Elapsed: 00:00:00.99
# Mc/sec: 534.62
//
Query:       MMETSP1137-20121227|3083_1  [L=679]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.5e-05   21.8   0.0    5.8e-05   19.9   0.0    1.8  1  TIGR00877 purD: phosphoribosylamine--glycine ligase
     0.0002   18.7   0.0    0.00037   17.8   0.0    1.4  1  TIGR00768 rimK_fam: alpha-L-glutamate ligases, RimK family
     0.0007   15.1   0.0    0.00095   14.7   0.0    1.1  1  TIGR01369 CPSaseII_lrg: carbamoyl-phosphate synthase, large subunit
     0.0022   14.6   0.0     0.0038   13.8   0.0    1.3  1  TIGR03909 pyrrolys_PylC: pyrrolysine biosynthesis protein PylC


Domain annotation for each model (and alignments):
>> TIGR00877  purD: phosphoribosylamine--glycine ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.0   5.7e-08   5.8e-05     126     293 ..     267     424 ..     250     433 .. 0.78

  Alignments for each domain:
  == domain 1    score: 19.9 bits;  conditional E-value: 5.7e-08
   TIGR00877 126 tepeeakeyieekgapaivvkadgLaaGKgvivvkdeeealkaveeilekkkf.geagekvviEefleGeEvsllalvdgktvvplplaqdhkrvlegDkgpnTGGmGayspapvvteevekkiaeeiveptvealkkegtpykGvLyaglmltkegepkvlefnvRfg 293
                 +++e+  +   ++++ ++vvk++  a+  gv +++++ +  ka + +  +k++ g  + +v++ e+l+G+E  +  +     ++ +++ +  krv++g   +   Gm       ++  e +    e++v+ t   l+  g++ +G +++++ l ++g p v+e+n+R  
  MMETSP1137-20121227|3083_1 267 EDVEKFLSASPDVNF-KAVVKPVEGAGSDGVFICDSHAQVRKAFASLEGTKNVlGLDNYSVLLQEYLKGDEYVVDSVSRDGVHKCVAIWKYDKRVFNGAPVVY-YGMRL----MPIDSEPQL---ESMVRYTFSVLDTLGIK-HGAMHSEIKLEERG-PVVVEINCRLH 424
                 455555555555666.59************************99999877765499999*****************9999999999999999****9976554.45632....233333333...34455566666666555.6999******9999.********975 PP

>> TIGR00768  rimK_fam: alpha-L-glutamate ligases, RimK family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.0   3.6e-07   0.00037      97     173 ..     255     335 ..     237     341 .. 0.81

  Alignments for each domain:
  == domain 1    score: 17.8 bits;  conditional E-value: 3.6e-07
   TIGR00768  97 kaglplpktlvagseeeakklieeigfPvvlKpvfGswGklvvlvedkqeaekllealeqlke....kykvflvQeyikks 173
                 ++ +p+    + ++ e++  + + ++f +v+Kpv+G   ++v+ +  +++++k   +le +k+    +  ++l+Qey k  
  MMETSP1137-20121227|3083_1 255 QQVFPQRLAHTREDVEKFLSASPDVNFKAVVKPVEGAGSDGVFICDSHAQVRKAFASLEGTKNvlglDNYSVLLQEYLKGD 335
                 6667777778888999999999******************************9999999888743233457899***9865 PP

>> TIGR01369  CPSaseII_lrg: carbamoyl-phosphate synthase, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0   9.2e-07   0.00095     662     841 ..     238     423 ..     226     475 .. 0.82

  Alignments for each domain:
  == domain 1    score: 14.7 bits;  conditional E-value: 9.2e-07
   TIGR01369 662 esidraEdRekFsklldelgikqpkgkeatsveeakeiakeigyPvlvRpsyvlgGrameiveneeeleryle.....eavevskekPvlidkyledavEvdvDavadgeevliagileHiEeaGvHsGDstlvlppqklseevk...kkikeivkkiakelkvk.GllniqfvvkdeevyviEvnvRa 841
                 e++  aE+R+   ++  +   +q   ++ ++ve+  ++  ++++  +v+p    g  ++ i+++++++++ +      ++v    ++ vl+++yl+ + E+ vD v++++   +++i ++  +  v  G  ++ ++++ +  + +   +++ +++ ++   l +k G +   + +++    v+E+n R 
  MMETSP1137-20121227|3083_1 238 EALXDAEQRHGQVRAATQQVFPQRLAHTREDVEKFLSASPDVNFKAVVKPVEGAGSDGVFICDSHAQVRKAFAslegtKNVLGLDNYSVLLQEYLK-GDEYVVDSVSRDGVHKCVAIWKY--DKRVFNGAPVVYYGMRLMPIDSEpqlESMVRYTFSVLDTLGIKhGAMHSEIKLEERGPVVVEINCRL 423
                 5677899999888888888899999999****************************************99887443323333346889*******9.********************987..4569999999999998876655411166667777888888885599999999999999999*99995 PP

>> TIGR03909  pyrrolys_PylC: pyrrolysine biosynthesis protein PylC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.0   3.7e-06    0.0038     120     253 ..     276     423 ..     272     429 .. 0.64

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 3.7e-06
   TIGR03909 120 kpdsefPvlvkPscesssegvriindrkeleel.lkle...s.....ednlvveeyleGesvsleviGdkgnyavvkiteleidat......ydCkrvlaPaeldlekkdefrelalklaaelnlk.Gimdvevilheeklkvleidarl 253
                  pd +f  +vkP  +++s gv i  ++ ++++    le   +     + +++++eyl+G+ + ++ +  +g ++ v i + +          y     l P++ +  + +++   ++++   l +k G m  e+ l+e++  v+ei+ rl
  MMETSP1137-20121227|3083_1 276 SPDVNFKAVVKPVEGAGSDGVFICDSHAQVRKAfASLEgtkNvlgldNYSVLLQEYLKGDEYVVDSVSRDGVHKCVAIWKYDKRVFngapvvYYG-MRLMPIDSEP-QLESMVRYTFSVLDTLGIKhGAMHSEIKLEERGPVVVEINCRL 423
                 58999****************99987665544322222111111211345799***********9998888888887766553322000111222.2244555542.2233444566777777775588888888888888888888887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (679 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       157  (0.038274); expected 82.0 (0.02)
Passed bias filter:                      127  (0.0309605); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.53u 0.17s 00:00:00.70 Elapsed: 00:00:00.70
# Mc/sec: 1280.29
//
Query:       MMETSP1137-20121227|3084_1  [L=587]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (587 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       162  (0.0394929); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.15s 00:00:00.55 Elapsed: 00:00:00.47
# Mc/sec: 1648.46
//
Query:       MMETSP1137-20121227|3086_1  [L=293]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.6e-33  113.7   0.0    2.5e-33  113.1   0.0    1.2  1  TIGR00104 YaeB_AF0241: putative methyltransferase, YaeB/AF_0241 family


Domain annotation for each model (and alignments):
>> TIGR00104  YaeB_AF0241: putative methyltransferase, YaeB/AF_0241 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  113.1   0.0   6.1e-37   2.5e-33       3     139 ..      28     171 ..      26     174 .. 0.88

  Alignments for each domain:
  == domain 1    score: 113.1 bits;  conditional E-value: 6.1e-37
   TIGR00104   3 elqlkpigvvrsPykeksdvprqgrvs.devseieildey......adalkgleefshlivlywldkaerdekklkvrPprlgenkrkGvFatRspaRPnPiGlslvelkever.nilkvkklDaldgtPviDikpysekidslk 139
                  + lkpig ++s + +k+ +prqg +  d  + +++ +          al+g+e++sh+++++ ++ +++   + kv+Pprl + +r+G FatRsp+RPnPiGlslv+l  ++  n+l ++++D++dgtPv+D+kpy+++ d++k
  MMETSP1137-20121227|3086_1  28 AISLKPIGHIESVFVQKFGTPRQGCLApDTPARLAVDQSMlgsldvRYALEGIEAYSHVWLVWSFHMNSHAAARAKVQPPRLRG-QRVGLFATRSPFRPNPIGLSLVRLDGITDgNTLLLSGVDLVDGTPVFDVKPYIPQYDAPK 171
                 578********************76651555667665555555455679*******************************8765.79************************99879*************************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (293 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        54  (0.0131643); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.23u 0.15s 00:00:00.38 Elapsed: 00:00:00.41
# Mc/sec: 943.24
//
Query:       MMETSP1137-20121227|3087_1  [L=169]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (169 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       157  (0.038274); expected 82.0 (0.02)
Passed bias filter:                       99  (0.0241346); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.15s 00:00:00.32 Elapsed: 00:00:00.42
# Mc/sec: 531.10
//
Query:       MMETSP1137-20121227|3088_1  [L=104]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (104 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       253  (0.0616772); expected 82.0 (0.02)
Passed bias filter:                      209  (0.0509508); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.19s 00:00:00.36 Elapsed: 00:00:00.34
# Mc/sec: 403.73
//
Query:       MMETSP1137-20121227|3090_1  [L=193]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (193 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       108  (0.0263286); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.16s 00:00:00.35 Elapsed: 00:00:00.57
# Mc/sec: 439.21
//
Query:       MMETSP1137-20121227|3091_1  [L=453]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0019   13.8  35.0      0.003   13.1  10.8    3.1  3  TIGR02169 SMC_prok_A: chromosome segregation protein SMC
  ------ inclusion threshold ------
       0.03    9.8  42.2      0.021   10.3  17.5    2.7  2  TIGR02168 SMC_prok_B: chromosome segregation protein SMC


Domain annotation for each model (and alignments):
>> TIGR02169  SMC_prok_A: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.4     0.016        33     897     936 ..     113     152 ..      56     168 .. 0.68
   2 !   13.1  10.8   1.5e-06     0.003     351     517 ..     178     342 ..     171     349 .. 0.83
   3 !   11.5   2.7   4.3e-06    0.0089     312     377 ..     386     451 ..     378     453 .] 0.92

  Alignments for each domain:
  == domain 1    score: -0.3 bits;  conditional E-value: 0.016
   TIGR02169 897 aelrelekkkeeleaeiekkrkrlkelkaklealeeelse 936
                 ++l+el k+ +++ +++ ++r + ++l+a+l++++ +l+e
  MMETSP1137-20121227|3091_1 113 EKLKELAKRAKTATMALGRERAQNAQLAAELATVKRHLKE 152
                 3344444444444444444444444444444444444433 PP

  == domain 2    score: 13.1 bits;  conditional E-value: 1.5e-06
   TIGR02169 351 kereklkeelkelkeeleelraeleevdkeaaelreelkelkekleklkeelnelkreldrllee...lkrleeelaelkaelerieekiaeleeeleelaeeikkaeqkleqlkedlekaekelrklkeeleklekelselerelaeleaqakaseeesreskaveevl 517
                  + ++l +elke ke+l++  ++l +++++++++r+el+  +++l k      +      +lle    +k + +++a l+++l+++++k+a+      ++ + ++++++++ +l+++  + ++e+++l    ++le+e  +++r+l +  a+ k++e  ++++k++ +++
  MMETSP1137-20121227|3091_1 178 GDGAALAKELKETKEKLAAANSRLHKENTAHQTVRAELSRCQRALAKEVGDDAN----VAKLLEDgsgAKGRAQQIALLREQLKELKAKLAAGG-GGGDVGADVRADDRQRGTLHAMEVERRAEMERLLLREQQLEEEAAKAKRNLXAQAARIKILEADVKSKKEKLKMM 342
                 5668999************************************98654433333....335655411156667788888999999999887754.567999*********************************************************998777665554 PP

  == domain 3    score: 11.5 bits;  conditional E-value: 4.3e-06
   TIGR02169 312 aekeeeledaeerlakaeaeidklkeeieelereieeekkereklkeelkelkeeleelraeleev 377
                 a+ e+++ d+ +r+ +++a+i+++++ ie+l++++e+ + + e l +e ++l+e  e l+++l e 
  MMETSP1137-20121227|3091_1 386 ADTERRVCDLSARVSQQQAQISRQEQIIEALRGQVEQAANREETLGAENSKLRELAELLQQKLRET 451
                 67899999****************************************************999885 PP

>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   7.8    0.0018       3.6     904     982 ..     179     262 ..     112     268 .. 0.31
   2 ?   10.3  17.5     1e-05     0.021     687     883 ..     248     447 ..     245     452 .. 0.54

  Alignments for each domain:
  == domain 1    score: 2.9 bits;  conditional E-value: 0.0018
   TIGR02168 904 elrelekkvkelereleelreklaqlelrleeleveiaelqerlseeyeleleeaeelee....k.veeeeeeaeeelkrleek 982
                 +  +l k++ke +++l +++++l++ +++ +++++e+++ q +l++e+ +++++a+ le+    k + ++ + ++e+lk+l++k
  MMETSP1137-20121227|3091_1 179 DGAALAKELKETKEKLAAANSRLHKENTAHQTVRAELSRCQRALAKEVGDDANVAKLLEDgsgaKgRAQQIALLREQLKELKAK 262
                 222333333333333333333333333333333333333333333333333333333333111112222222233333333333 PP

  == domain 2    score: 10.3 bits;  conditional E-value: 1e-05
   TIGR02168 687 eieeleekiaelekelkelekeleeleeeleklrkeleelerklselkkelerlekeveqleerlaqlekeleeleeereeleeeleeaeeelkeaeeeieeleaeieqlkeelkalrealseleaelt....elkeeaaekeerleslekeiaalekeleeleeqieeleeeiesleaeieeleeeleeleeeleellke 883
                 +i+ l e+++el+++l++     + +  +++  +++  +l+    e+++e+erl  +++qlee++a+++++l  ++++++ le+++++++e+lk   +++++ ++ + +lkeel++lr +    +++      + k + a++e+r+ +l++++++++ ++ + e+ ie l+ ++e+++++ e+l +e ++l+e +e l+++
  MMETSP1137-20121227|3091_1 248 QIALLREQLKELKAKLAAGGGGGD-VGADVRADDRQRGTLHAMEVERRAEMERLLLREQQLEEEAAKAKRNLXAQAARIKILEADVKSKKEKLKMMLDKSDTDDKLVSALKEELAKLRGRAGGRKSDSGegxpASKPSDADTERRVCDLSARVSQQQAQISRQEQIIEALRGQVEQAANREETLGAENSKLRELAELLQQK 447
                 555555555555555555544333.33344444444445555566677778888888888888888888888888888888888888888888888888888888888888888887776655554443110223333333444444444444444444444444444444444444444444444433333333333332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (453 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       294  (0.0716724); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.15s 00:00:00.67 Elapsed: 00:00:00.63
# Mc/sec: 949.06
//
Query:       MMETSP1137-20121227|3092_1  [L=358]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      4e-16   56.6   0.0    1.2e-15   55.0   0.0    1.7  2  TIGR01800 cit_synth_II: 2-methylcitrate synthase/citrate synthase II
    2.7e-09   34.0   0.0    4.1e-09   33.4   0.0    1.2  1  TIGR01798 cit_synth_I: citrate (Si)-synthase
  ------ inclusion threshold ------
      0.035   11.3   0.1       0.09   10.0   0.0    1.6  1  TIGR01019 sucCoAalpha: succinate-CoA ligase, alpha subunit


Domain annotation for each model (and alignments):
>> TIGR01800  cit_synth_II: 2-methylcitrate synthase/citrate synthase II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0     0.088   1.2e+02      13      52 ..      97     139 ..      88     143 .. 0.72
   2 !   55.0   0.0   8.5e-19   1.2e-15     162     343 ..     139     333 ..     120     342 .. 0.80

  Alignments for each domain:
  == domain 1    score: -0.9 bits;  conditional E-value: 0.088
   TIGR01800  13 lsti.dkeegkLtyrGydiedlaekas.fEEvaylllyg.kLP 52 
                 +sti d+ +++L y G++i  + e+      v+ ll++  kLP
  MMETSP1137-20121227|3092_1  97 VSTIcDDRKEELIYAGMEIGRVFEENIgIGGVVSLLWFRrKLP 139
                 55661455679********998776554888998888742565 PP

  == domain 2    score: 55.0 bits;  conditional E-value: 8.5e-19
   TIGR01800 162 pskeeekaldiaLiLyaeHelnAstf.aarviastlsDiysaivaaigaLkGplHGGAneavlkmleeiedp.eeaeeyikkklenkekimGfGHrvYk..taDpRakilkelakklsakkgesklyeiaerlekvvee.ekgllpnvDfysasvyasl....gipve........lftpiFalsRvsGWtahiiEqve 343
                 p + + k l++ L+L a+H+   s    ++v+a    D+ s++ +++ ++ Gp  GGA + + +m+++  d   + +++i k+ ++k+ +mG+GHr+    + D R++ilk++ k    + ++s++ + a ++ek++++ + +l+ nvD   + ++ +l    g  +e        +   +F+l+R  G+++h ++q  
  MMETSP1137-20121227|3092_1 139 PPSLASKFLEMILMLTADHGPAVSGAhNTIVTARAGKDLISSLCSGLLTI-GPRFGGAIDGAASMFSQAVDQgLSPQAFIDKMRDEKKLVMGIGHRIKSleNPDKRVEILKKFVKD---NFPKSQVLDFAIQVEKLTTRkKSNLILNVDGTIGCSFVDLlrysGXXEEaetylnsgVLNGLFVLGRSIGFIGHYLDQKR 333
                 566778999***********9998651678889999***********997.***************88655527888899999999***********8744778899999998775...67889************9994568******98888887764444333223322222244568999999999999888865 PP

>> TIGR01798  cit_synth_I: citrate (Si)-synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.4   0.0     3e-12   4.1e-09     200     388 ..     137     330 ..     131     341 .. 0.75

  Alignments for each domain:
  == domain 1    score: 33.4 bits;  conditional E-value: 3e-12
   TIGR01798 200 kvnpvla.raldrifilhadheqnaststvr.lagssganpfaciaagiaalwgpahgganeavlkmleeigsve.kiaefikkvkdkndevrlmgfghrv..yknydprakvlketceevlkelgkeddpllklalelekialede..yf..iekkl.ypnvdf..ysgivlkalg.iptemftvifalartvgwisqwke 388
                 k+ p la + l+ i++l adh    s +    ++  +g + ++++++g+ ++ gp  gga + +  m+++  +     ++fi+k++d++    +mg+ghr+    n d r ++lk+  ++ +      ++++l+ a+++ek++ + +   +  ++  +    vd+  ysg   +a   + + ++  +f l r++g+i ++ +
  MMETSP1137-20121227|3092_1 137 KLPPSLAsKFLEMILMLTADHGPAVSGAHNTiVTARAGKDLISSLCSGLLTI-GPRFGGAIDGAASMFSQAVDQGlSPQAFIDKMRDEK--KLVMGIGHRIksLENPDKRVEILKKFVKDNFP-----KSQVLDFAIQVEKLTTRKKsnLIlnVDGTIgCSFVDLlrYSGXXEEAETyLNSGVLNGLFVLGRSIGFIGHYLD 330
                 5667776246899*********999977554145668899999*****9875.**************9987766515678****99988..568******933479999******98776543.....4558999999999987654113311333332334554559***99996526788999*************9976 PP

>> TIGR01019  sucCoAalpha: succinate-CoA ligase, alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.0   6.6e-05      0.09     243     284 ..      14      55 ..       9      57 .. 0.91

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 6.6e-05
   TIGR01019 243 mGhaGaiisggkGtaeskiealeaaGvkvvkslaeiaelvae 284
                  GhaG+  +    t+e+k  al++aG+ v  s  e+ ++++e
  MMETSP1137-20121227|3092_1  14 FGHAGSAANSMLETSEAKNAALKEAGAIVPTSFNELPHAIHE 55 
                 7*****************************999999888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (358 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        98  (0.0238908); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.30u 0.16s 00:00:00.46 Elapsed: 00:00:00.48
# Mc/sec: 984.42
//
Query:       MMETSP1137-20121227|3094_1  [L=605]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (605 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        77  (0.0187713); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.17s 00:00:00.57 Elapsed: 00:00:00.49
# Mc/sec: 1629.66
//
Query:       MMETSP1137-20121227|3095_1  [L=34]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (34 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        10  (0.00243784); expected 82.0 (0.02)
Passed bias filter:                       10  (0.00243784); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.14s 00:00:00.23 Elapsed: 00:00:00.23
# Mc/sec: 195.11
//
Query:       MMETSP1137-20121227|3096_1  [L=453]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (453 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       112  (0.0273038); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.13s 00:00:00.46 Elapsed: 00:00:00.48
# Mc/sec: 1245.65
//
Query:       MMETSP1137-20121227|3097_1  [L=253]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (253 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        64  (0.0156021); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.14s 00:00:00.36 Elapsed: 00:00:00.36
# Mc/sec: 927.59
//
Query:       MMETSP1137-20121227|3098_1  [L=290]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (290 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        85  (0.0207216); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.17s 00:00:00.40 Elapsed: 00:00:00.28
# Mc/sec: 1319.89
//
Query:       MMETSP1137-20121227|3099_1  [L=332]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (332 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       104  (0.0253535); expected 82.0 (0.02)
Passed bias filter:                       98  (0.0238908); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.13s 00:00:00.40 Elapsed: 00:00:00.40
# Mc/sec: 1095.51
//
Query:       MMETSP1137-20121227|3100_1  [L=268]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.2e-11   40.4   0.0    1.2e-10   39.2   0.0    1.6  1  TIGR00989 3a0801s07tom40: mitochondrial import receptor subunit


Domain annotation for each model (and alignments):
>> TIGR00989  3a0801s07tom40: mitochondrial import receptor subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.2   0.0     3e-14   1.2e-10      19     158 ..       9     142 ..       2     145 .. 0.87

  Alignments for each domain:
  == domain 1    score: 39.2 bits;  conditional E-value: 3e-14
   TIGR00989  19 llsnylftGlradvtkafslaplfqvshafalGsqalpk.yafsalfgteqlfaqGnvdndgavsarlnyrwdkkviskvqlqis..dGq.pdmaqlehdhkgkdfsvslkalnpsfeekgltGifvasllqsvtpklalGlea 158
                 +l+  +f G r + +k ++    f   h++ +Gs ++p+ y f a  g++++++   +d  g +++r+  +  +   +k++ q++    q p+  +l+ d+kg+ f + +      +  +   G++ a+++qs+tp l++G e 
  MMETSP1137-20121227|3100_1   9 ILTPDVFDGSRFEFNKQLT--QKFALNHSIQMGSSVMPPsYEFGANVGDDHVLLASRIDPAGRLTGRVHAQLTDALTAKMHAQVApqSAQtPSSLKLDLDYKGNSFMAGVT-----YMGN---GLIAANYMQSLTPSLSVGGEG 142
                 678889**********865..6799***********9866****************************************999962233469999***********99986.....5555...78899************9765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (268 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        89  (0.0216967); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.23u 0.18s 00:00:00.41 Elapsed: 00:00:00.39
# Mc/sec: 907.00
//
Query:       MMETSP1137-20121227|3101_1  [L=90]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0024   15.8   0.1     0.0028   15.6   0.0    1.1  1  TIGR01958 nuoE_fam: NADH-quinone oxidoreductase, E subunit


Domain annotation for each model (and alignments):
>> TIGR01958  nuoE_fam: NADH-quinone oxidoreductase, E subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   6.9e-07    0.0028      67     129 ..       3      65 ..       1      71 [. 0.93

  Alignments for each domain:
  == domain 1    score: 15.6 bits;  conditional E-value: 6.9e-07
   TIGR01958  67 gryklqvCttvvCaLrGseallkalekklgiklgettkdgkftlkeveClgaCeeaPvllvne 129
                 ++ + +vC+   C  rGs+++l   e+  +  +g + +   ++ +e  C   C+++P + v  
  MMETSP1137-20121227|3101_1   3 AQRRFEVCQGKHCRKRGSKNTLALFEELAADSPGIIVQAADMSHTEHGCFDECTMGPNVRVDG 65 
                 567889*********************9999**************************999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (90 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        53  (0.0129205); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.13u 0.14s 00:00:00.27 Elapsed: 00:00:00.27
# Mc/sec: 439.96
//
Query:       MMETSP1137-20121227|3102_1  [L=963]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (963 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       161  (0.0392491); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.58u 0.15s 00:00:00.73 Elapsed: 00:00:00.53
# Mc/sec: 2398.22
//
Query:       MMETSP1137-20121227|3103_1  [L=534]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (534 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        98  (0.0238908); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.12s 00:00:00.47 Elapsed: 00:00:00.46
# Mc/sec: 1532.22
//
Query:       MMETSP1137-20121227|3104_1  [L=54]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        88  (0.0214529); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.15s 00:00:00.27 Elapsed: 00:00:00.45
# Mc/sec: 158.39
//
Query:       MMETSP1137-20121227|3105_1  [L=357]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (357 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       158  (0.0385178); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.16s 00:00:00.44 Elapsed: 00:00:00.51
# Mc/sec: 923.92
//
Query:       MMETSP1137-20121227|3106_1  [L=561]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (561 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.13s 00:00:00.49 Elapsed: 00:00:00.64
# Mc/sec: 1156.97
//
Query:       MMETSP1137-20121227|3107_1  [L=179]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (179 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        45  (0.0109703); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.17s 00:00:00.34 Elapsed: 00:00:00.38
# Mc/sec: 621.74
//
Query:       MMETSP1137-20121227|3108_1  [L=473]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (473 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       314  (0.076548); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.14s 00:00:00.54 Elapsed: 00:00:00.53
# Mc/sec: 1177.94
//
Query:       MMETSP1137-20121227|3109_1  [L=184]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.016   12.4   9.2      0.022   11.9   6.4    1.2  1  TIGR02783 TrbL_P: P-type conjugative transfer protein TrbL


Domain annotation for each model (and alignments):
>> TIGR02783  TrbL_P: P-type conjugative transfer protein TrbL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   6.4   5.5e-06     0.022     228     297 ..      71     139 ..      42     142 .. 0.65

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 5.5e-06
   TIGR02783 228 allevvilsvvilllvkkipeiaaslvsgasvlgaggavaaaaav.agvaaaggaalaaGalsaaagasga 297
                  +l  + + +v++++v + p  +a+l+ gas + + ++v   ++  a+v a++  a  a+a saaa+a +a
  MMETSP1137-20121227|3109_1  71 RILRHAAANIVLVGIV-VHPASIAGLADGASHITSTSTVDSLLTRdAAVVATASTASSAAA-SAAATAAAA 139
                 4455556667777776.4689999********99999997655541445555555555555.555555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (184 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       265  (0.0646026); expected 82.0 (0.02)
Passed bias filter:                      111  (0.02706); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.20u 0.15s 00:00:00.35 Elapsed: 00:00:00.38
# Mc/sec: 639.11
//
Query:       MMETSP1137-20121227|3110_1  [L=370]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.54    8.1   5.7       0.15    9.9   0.4    2.1  2  TIGR02573 LcrG_PcrG: type III secretion protein LcrG


Domain annotation for each model (and alignments):
>> TIGR02573  LcrG_PcrG: type III secretion protein LcrG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.4     0.049     2e+02      48      73 ..      32      57 ..      18      67 .. 0.72
   2 ?    9.9   0.4   3.8e-05      0.15      43      85 ..      80     126 ..      64     128 .. 0.73

  Alignments for each domain:
  == domain 1    score: -0.1 bits;  conditional E-value: 0.049
   TIGR02573 48 aelvkaaeqeLleevkRrRsrqpqqg 73
                a l+++ eq L + ++ + ++q qq 
  MMETSP1137-20121227|3110_1 32 AALAQKHEQLLYAVLQQLGQDQAQQV 57
                46777777777777777777777764 PP

  == domain 2    score: 9.9 bits;  conditional E-value: 3.8e-05
   TIGR02573  43 fggleaelvkaaeqeLleevkRrRsrqpq....qgeqGkRrrrPtmm 85 
                 +  +++e v++ e +Ll  ++    +q q    q  qG Rrr P+ m
  MMETSP1137-20121227|3110_1  80 VDPKDTEAVREIESNLLRVLHAEQASQCQaqqvQHGQGPRRRAPPAM 126
                 556788999*******998877665554432226668999999*999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (370 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       204  (0.0497318); expected 82.0 (0.02)
Passed bias filter:                      128  (0.0312043); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.16s 00:00:00.51 Elapsed: 00:00:00.42
# Mc/sec: 1162.76
//
Query:       MMETSP1137-20121227|3111_1  [L=179]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (179 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       115  (0.0280351); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.14s 00:00:00.33 Elapsed: 00:00:00.32
# Mc/sec: 738.31
//
Query:       MMETSP1137-20121227|3112_1  [L=467]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (467 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        76  (0.0185275); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.16s 00:00:00.48 Elapsed: 00:00:00.68
# Mc/sec: 906.45
//
Query:       MMETSP1137-20121227|3113_1  [L=79]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (79 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       112  (0.0273038); expected 82.0 (0.02)
Passed bias filter:                      109  (0.0265724); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.18s 00:00:00.32 Elapsed: 00:00:00.43
# Mc/sec: 242.49
//
Query:       MMETSP1137-20121227|3114_1  [L=137]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (137 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        45  (0.0109703); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.13s 00:00:00.28 Elapsed: 00:00:00.28
# Mc/sec: 623.53
//
Query:       MMETSP1137-20121227|3115_1  [L=389]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.4e-14   50.3   0.0    5.1e-14   49.7   0.0    1.2  1  TIGR03466 HpnA: hopanoid-associated sugar epimerase
    1.8e-05   21.5   0.0    2.5e-05   21.1   0.0    1.2  1  TIGR01179 galE: UDP-glucose 4-epimerase
    0.00017   18.8   0.0    0.00028   18.0   0.0    1.3  1  TIGR01850 argC: N-acetyl-gamma-glutamyl-phosphate reductase
    0.00046   17.2   0.0    0.00088   16.2   0.0    1.5  1  TIGR04180 EDH_00030: NAD dependent epimerase/dehydratase, LLPSF_EDH_00030 family
     0.0097   13.3   0.0      0.017   12.5   0.0    1.4  1  TIGR01777 yfcH: TIGR01777 family protein
  ------ inclusion threshold ------
      0.021   12.2   0.0      0.035   11.4   0.0    1.3  1  TIGR03649 ergot_EASG: ergot alkaloid biosynthesis protein, AFUA_2G17970 family
      0.026   11.4   0.1      0.044   10.7   0.1    1.3  1  TIGR01214 rmlD: dTDP-4-dehydrorhamnose reductase


Domain annotation for each model (and alignments):
>> TIGR03466  HpnA: hopanoid-associated sugar epimerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.7   0.0   8.7e-17   5.1e-14       3     113 ..       7     115 ..       5     141 .. 0.90

  Alignments for each domain:
  == domain 1    score: 49.7 bits;  conditional E-value: 8.7e-17
   TIGR03466   3 vlvtGatGFvGsavvrllleeGeevrvlvrktsdrrnlee.ld.vEiveGdlkdeaslkkalkGcealfHvAAdyrlwakdpeelykanvegtravleaAleagvervvytss 113
                  +v G++G+vGs+++r+ l++G++v  + r++ + + ++  ld +E +  d++d+a+l++a+kG +a++     +      +e + + n e+ +++++aA+  gver vy s+
  MMETSP1137-20121227|3115_1   7 LVVVGGSGYVGSHIMRAALARGASVASVSRRGKPVASVSPpLDrAEWISADVQDSAALQNAMKGADAVISCLGAF----GSNEFMRRVNGEQNEKIISAAAAGGVERFVYISA 115
                 5799******************************99997436549***********************9876654....46788999***********************997 PP

>> TIGR01179  galE: UDP-glucose 4-epimerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1   0.0   4.2e-08   2.5e-05       2      79 ..       7      79 ..       6     121 .. 0.77

  Alignments for each domain:
  == domain 1    score: 21.1 bits;  conditional E-value: 4.2e-08
   TIGR01179  2 iLvtGgaGyiGshvvrqllekgkevvvlDnlskgskealkalekitevklvegdladkekleavleeekidaviHfaa 79
                ++v+Gg+Gy+Gsh++r+ l++g++v  +    k  +++ + l+   + + +++d++d+++l+++++    davi   +
  MMETSP1137-20121227|3115_1  7 LVVVGGSGYVGSHIMRAALARGASVASVSRRGKPVASVSPPLD---RAEWISADVQDSAALQNAMKG--ADAVISCLG 79
                789*********************9987766666555555555...799*************99864..567776555 PP

>> TIGR01850  argC: N-acetyl-gamma-glutamyl-phosphate reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.0   4.8e-07   0.00028       2      96 ..       6     100 ..       5     107 .. 0.77

  Alignments for each domain:
  == domain 1    score: 18.0 bits;  conditional E-value: 4.8e-07
   TIGR01850   2 kvaivGasGYtGaeLlrllakHpevevtklvssreagkklsevhphlkglvd..lkleelee.eeileeadvvflAlphgvsaelvpelle.kgvkvid 96 
                 ++++vG+sGY G  ++r   +  + +   ++s ++ gk++++v p l +     + +++ ++ +++++ ad+v+ +l +  s+e+++++   ++ k+i 
  MMETSP1137-20121227|3115_1   6 RLVVVGGSGYVGSHIMRAALARGA-S---VASVSRRGKPVASVSPPLDRAEWisADVQDSAAlQNAMKGADAVISCLGAFGSNEFMRRVNGeQNEKIIS 100
                 6789*************8765432.2...4567789***********87655234444444479999************99999999987734466665 PP

>> TIGR04180  EDH_00030: NAD dependent epimerase/dehydratase, LLPSF_EDH_00030 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0   1.5e-06   0.00088       2      76 ..       8      76 ..       7     126 .. 0.76

  Alignments for each domain:
  == domain 1    score: 16.2 bits;  conditional E-value: 1.5e-06
   TIGR04180  2 lvtGadGfiGshlvealvekGaevralvlynsfnswGwldevekevkkeievvlGdirdaesvkkavkgvdvvfh 76
                +v G  G++Gsh++ a +++Ga+v ++       + G   ++ +   ++ e ++ d++d++++++a+kg+d+v+ 
  MMETSP1137-20121227|3115_1  8 VVVGGSGYVGSHIMRAALARGASVASVS------RRGKPVASVSPPLDRAEWISADVQDSAALQNAMKGADAVIS 76
                68999*****************997654......4555444555688999*********************9864 PP

>> TIGR01777  yfcH: TIGR01777 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.5   0.0   2.9e-05     0.017       2      67 ..       8      80 ..       7     103 .. 0.66

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 2.9e-05
   TIGR01777  2 litGgtGliGralveelekkghevviltrskekekeekke.sakevaee......aeeealegvdavinLaGe 67
                ++ Gg+G +G++++++  ++g +v  ++r+ +  ++ +     +e+++       a ++a++g+davi   G+
  MMETSP1137-20121227|3115_1  8 VVVGGSGYVGSHIMRAALARGASVASVSRRGKPVASVSPPlDRAEWISAdvqdsaALQNAMKGADAVISCLGA 80
                799**************************98866554422022334333443333445589999999987654 PP

>> TIGR03649  ergot_EASG: ergot alkaloid biosynthesis protein, AFUA_2G17970 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   5.9e-05     0.035       3     109 ..       8     117 ..       6     141 .. 0.79

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 5.9e-05
   TIGR03649   3 LllgGtGkvasriarllaaasvpllvasrssssaaledekavkFdwldedtyenvfssddemekeelisavylvappvl...dlasllikFidvavkkgvkrfvllsasa 109
                 +++gG+G v+s+i r   a +  +   sr+++  a+ +    + +w+  d  + +  ++     + +is +    ++ +    + +   k i  a + gv+rfv++sa+ 
  MMETSP1137-20121227|3115_1   8 VVVGGSGYVGSHIMRAALARGASVASVSRRGKPVASVSPPLDRAEWISADVQDSAALQNAMKGADAVISCLGAFGSNEFmrrVNGEQNEKIISAAAAGGVERFVYISAAP 117
                 689*************9999***9999****998888888889999998887776645555557789999988877765222233567899999*************975 PP

>> TIGR01214  rmlD: dTDP-4-dehydrorhamnose reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.1   7.5e-05     0.044       1      99 [.       6     114 ..       6     116 .. 0.84

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 7.5e-05
   TIGR01214   1 rilitGakgqlgreLveqlskegsevvaltrs.................qldledpealeellreikPdvvvntaAytdVDkaEseaekayavNalatenlAraaarvga.llvhiS 99 
                 r++++G++g +g+++++++   g  v  ++r+                 ++d++d +al++ ++    d+v+ +       +a   +e  ++vN    e++  aaa+ g+ ++v+iS
  MMETSP1137-20121227|3115_1   6 RLVVVGGSGYVGSHIMRAALARGASVASVSRRgkpvasvsppldraewiSADVQDSAALQNAMKG--ADAVISCL------GAFGSNEFMRRVNGEQNEKIISAAAAGGVeRFVYIS 114
                 789*************99999999998888888****************************9998..57888773......455677788888888888888888777763577777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (389 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       158  (0.0385178); expected 82.0 (0.02)
Passed bias filter:                      147  (0.0358362); expected 82.0 (0.02)
Passed Vit filter:                        37  (0.00901999); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.34u 0.14s 00:00:00.48 Elapsed: 00:00:00.48
# Mc/sec: 1069.66
//
Query:       MMETSP1137-20121227|3117_1  [L=446]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (446 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        85  (0.0207216); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.13s 00:00:00.44 Elapsed: 00:00:00.41
# Mc/sec: 1435.78
//
Query:       MMETSP1137-20121227|3118_1  [L=311]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (311 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       133  (0.0324232); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.16s 00:00:00.41 Elapsed: 00:00:00.28
# Mc/sec: 1466.02
//
Query:       MMETSP1137-20121227|3120_1  [L=101]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        36  (0.00877621); expected 82.0 (0.02)
Passed bias filter:                       34  (0.00828864); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.13s 00:00:00.26 Elapsed: 00:00:00.26
# Mc/sec: 512.73
//
Query:       MMETSP1137-20121227|3121_1  [L=39]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (39 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        30  (0.00731351); expected 82.0 (0.02)
Passed bias filter:                       29  (0.00706972); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.16s 00:00:00.25 Elapsed: 00:00:00.38
# Mc/sec: 135.46
//
Query:       MMETSP1137-20121227|3122_1  [L=280]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (280 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       174  (0.0424183); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.15s 00:00:00.37 Elapsed: 00:00:00.38
# Mc/sec: 972.55
//
Query:       MMETSP1137-20121227|3123_1  [L=501]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (501 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       113  (0.0275475); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.17s 00:00:00.50 Elapsed: 00:00:00.45
# Mc/sec: 1469.48
//
Query:       MMETSP1137-20121227|3124_1  [L=236]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (236 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       145  (0.0353486); expected 82.0 (0.02)
Passed bias filter:                       39  (0.00950756); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.13s 00:00:00.36 Elapsed: 00:00:00.36
# Mc/sec: 865.26
//
Query:       MMETSP1137-20121227|3125_1  [L=465]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.2e-09   33.8   0.9      0.012   11.5   0.0    4.7  5  TIGR00870 trp: transient-receptor-potential calcium channel protein


Domain annotation for each model (and alignments):
>> TIGR00870  trp: transient-receptor-potential calcium channel protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.4   0.0   4.9e-05       0.2     131     159 ..      25      53 ..      23      75 .. 0.91
   2 !    1.8   0.1    0.0025        10     127     156 ..     120     149 ..      82     178 .. 0.86
   3 !    6.3   0.0   0.00011      0.43     132     159 ..     199     226 ..     192     231 .. 0.91
   4 ?   -0.6   0.0     0.013        53     132     158 ..     232     258 ..     228     273 .. 0.91
   5 !   11.5   0.0   2.8e-06     0.012     131     161 ..     298     328 ..     295     340 .. 0.89

  Alignments for each domain:
  == domain 1    score: 7.4 bits;  conditional E-value: 4.9e-05
   TIGR00870 131 gitalilAihkqnyeivklLlekgasvea 159
                 ++ ++++A + ++ e v++L++ ga+++a
  MMETSP1137-20121227|3125_1  25 DQLPIHMASELDDAESVRALVAGGADIKA 53 
                 899************************95 PP

  == domain 2    score: 1.8 bits;  conditional E-value: 0.0025
   TIGR00870 127 eftkgitalilAihkqnyeivklLlekgas 156
                 + t+ +t+l+ A ++  +++  +Ll+ ga+
  MMETSP1137-20121227|3125_1 120 TNTESQTPLMHALMHGHMTLAAALLDAGAD 149
                 567889999999999999999999999986 PP

  == domain 3    score: 6.3 bits;  conditional E-value: 0.00011
   TIGR00870 132 italilAihkqnyeivklLlekgasvea 159
                  tal+ A  k+ + +v+lL+  ga+v++
  MMETSP1137-20121227|3125_1 199 RTALHWACGKNLLPCVELLISAGADVNL 226
                 7*************************94 PP

  == domain 4    score: -0.6 bits;  conditional E-value: 0.013
   TIGR00870 132 italilAihkqnyeivklLlekgasve 158
                 +t+l+ A   +  e  ++L++ gas e
  MMETSP1137-20121227|3125_1 232 QTPLHWACTLNAAESARALVKAGASTE 258
                 9***********************876 PP

  == domain 5    score: 11.5 bits;  conditional E-value: 2.8e-06
   TIGR00870 131 gitalilAihkqnyeivklLlekgasveara 161
                 g +al+ A+ +  + +v+lLlekga+ +++a
  MMETSP1137-20121227|3125_1 298 GFSALHYAARRGALSCVRLLLEKGADRHLAA 328
                 789**********************988655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (465 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        96  (0.0234032); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.17s 00:00:00.51 Elapsed: 00:00:00.60
# Mc/sec: 1022.92
//
Query:       MMETSP1137-20121227|3126_1  [L=479]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      4e-11   40.7  23.0    8.7e-08   29.7   3.5    2.3  2  TIGR00950 2A78: carboxylate/amino acid/amine transporter


Domain annotation for each model (and alignments):
>> TIGR00950  2A78: carboxylate/amino acid/amine transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   7.0   2.1e-07   0.00088       1     188 [.     159     352 ..     159     359 .. 0.79
   2 !   29.7   3.5   2.1e-11   8.7e-08     176     264 .]     369     456 ..     361     456 .. 0.87

  Alignments for each domain:
  == domain 1    score: 16.6 bits;  conditional E-value: 2.1e-07
   TIGR00950   1 WGttgvvikelles..qlplyfavlr..rlifallllLpllrlrnslkrllrllllgalqlgvfyvllflavkk.ltvaiaalllvlaPlyvtllsdllekervrkkkllAavlalaGivlllsdgnlsislaGl....llgllsgisfAlgtvlakrlvkkeglellqftgfvvlliGallllpfalllgpnlqal 188
                 WG+ + vik  +++  ++p  +++++  r  + +++l+p++++  s + + + + +gal+++  y++  +a +  +++++aa + +l+ + v++ls +    +v k++++A++lal Gi  l    ++++ + +l    +++l+  i f l  ++   ++k ++   l++++   l++++ +l ++++  g  +  l
  MMETSP1137-20121227|3126_1 159 WGSNFAVIKASIQAlgDVPNGASLFVagRFGLSAVVLAPFMFSASSMGAVVSGAGVGALCAF-GYLCQAVALEMgSKSGTAAFICSLQ-AVVVALSTAWA-GEVPKRTWIAVALALSGIGCLELPAVIAEGPSALclgdIVALGQPIGFGLSYLVIEYAMKEHPEDALPLAALQCLVLAGSFLGLASASSGILPWEL 352
                 9999999999988777888888888733566778*********9999999999999999976.7899999999978888888888888.56778888888.8****************9999888888888777722224556666777777777788888888888899888889999988888777766666555 PP

  == domain 2    score: 29.7 bits;  conditional E-value: 2.1e-11
   TIGR00950 176 pfalllgpnlqalpatslqwlallyLgligtllayflynkglkevdasaasilalleplvallLgllilgetlslvqliggalilaavl 264
                 p+ l ++  +q+++  ++++ a++y gli t+l++ l +   k ++a+ as++ + epl a l g ++l+ +ls ++++gg+li+aa+l
  MMETSP1137-20121227|3126_1 369 PAVLDADSIAQLTATWTVPI-AVAYTGLITTALTIWLQAAVFKRLPAVDASVVLTTEPLWACLCGAILLHDRLSTADYVGGSLIIAALL 456
                 44555555555666667777.9****************************************************************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (479 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       107  (0.0260848); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.12s 00:00:00.46 Elapsed: 00:00:00.51
# Mc/sec: 1239.66
//
Query:       MMETSP1137-20121227|3127_1  [L=480]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.2e-35  121.1   0.0    1.8e-35  120.6   0.0    1.1  1  TIGR01327 PGDH: phosphoglycerate dehydrogenase
    0.00077   16.3   1.6     0.0025   14.6   1.1    1.8  1  TIGR00518 alaDH: alanine dehydrogenase
  ------ inclusion threshold ------
        3.8    4.7  11.8      0.043   11.1   1.2    2.2  2  TIGR01097 PhnE: phosphonate ABC transporter, permease protein PhnE


Domain annotation for each model (and alignments):
>> TIGR01327  PGDH: phosphoglycerate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  120.6   0.0   1.3e-38   1.8e-35      78     311 ..     233     467 ..     231     476 .. 0.90

  Alignments for each domain:
  == domain 1    score: 120.6 bits;  conditional E-value: 1.3e-38
   TIGR01327  78 ieaatkkGilvvNaPegntisaaElalalllalaRkipqadksvkekkWerkkflGtElygktlGviGlGriGsevakrakalgmkvlayDPyise.ekaeklgvellkdldellaeaDvitvHvPltketkgligkeelakmKkgviivNcaRGGiidEkALveale..egkvraaalDvfekEPpt.dnklleldnvvvtpHlgAsteEaqenvavevaeevlealkgevvesavN 311
                 i aa + Gi +   P       a + +a++l+ +R + +  ++  +k+W     +  + +g  +Gv+G+G iG+eva+ a algm+ +++     +   +e++     + ld ll e+D++ v vP t++t++li+ e+la mK+++ i+N+aRG +idE AL++al+  ++  ++a lDv + EP   d++l +++nvv+tpH +  t+ a ++ ++  +++++++ +ge+ ++ v 
  MMETSP1137-20121227|3127_1 233 IRAAHAAGIKMTYCPGVYATPIAQYVIAHVLSCTRMLREHAEQQASKTWAP--LMQRDPRGAVVGVVGAGGIGNEVARMATALGMRSIGWRRRAGSfGSFEDIFTG-EEGLDALLMESDFVVVAVPNTPQTRNLINTEKLALMKPSAWIINVARGAVIDEIALTTALQieSAPPAGAVLDVAAVEPLAhDSPLWSMQNVVITPHDSWMTQRAAKDNTAYFVDNLRRLQRGEALREPVP 467
                 568888999999999999999*******************9********97..999**********************************8766442677888766.788*******************************************************9861155568899********8879********************9999999999999999999988887765 PP

>> TIGR00518  alaDH: alanine dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   1.1   1.9e-06    0.0025     168     281 ..     292     394 ..     287     404 .. 0.79

  Alignments for each domain:
  == domain 1    score: 14.6 bits;  conditional E-value: 1.9e-06
   TIGR00518 168 gkvtiiGgGvvGtnaaklavGlGatvtildinvdrlrqldelfgsriktrysnaveiedavkeadlligavlipGakapklvseelvkqmkpGavivdvaidqGGivetvrvtt 281
                 + v ++G+G +G + a++a+ lG             r+    fgs  +  ++    ++ ++ e+d+++ av  +  ++ +l+  e+++ mkp a i++va  +G +++ + +tt
  MMETSP1137-20121227|3127_1 292 AVVGVVGAGGIGNEVARMATALGMRSIGW-------RRRAGSFGSF-EDIFTGEEGLDALLMESDFVVVAVPNT-PQTRNLINTEKLALMKPSAWIINVA--RGAVIDEIALTT 394
                 45789******************876444.......4444556653.34455668899**********999765.467899****************998..688888887776 PP

>> TIGR01097  PhnE: phosphonate ABC transporter, permease protein PhnE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   1.9      0.28   3.8e+02      57      89 ..      95     127 ..      73     144 .. 0.69
   2 ?   11.1   1.2   3.2e-05     0.043     200     218 ..     292     310 ..     289     320 .. 0.82

  Alignments for each domain:
  == domain 1    score: -1.8 bits;  conditional E-value: 0.28
   TIGR01097  57 ilkalleTlaiallgtllaavlalplallaArn 89 
                  + +++  l i l  t+ aav++ ++al+aA+ 
  MMETSP1137-20121227|3127_1  95 SVAEMVIPLPIKLXDTAAAAVATAAVALVAATL 127
                 455666666677777777777777777776653 PP

  == domain 2    score: 11.1 bits;  conditional E-value: 3.2e-05
   TIGR01097 200 tvlGlvGAGGIGleLaeai 218
                 +v+G+vGAGGIG e+a   
  MMETSP1137-20121227|3127_1 292 AVVGVVGAGGIGNEVARMA 310
                 89**********9987655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (480 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       250  (0.0609459); expected 82.0 (0.02)
Passed bias filter:                      168  (0.0409556); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.40u 0.15s 00:00:00.55 Elapsed: 00:00:00.40
# Mc/sec: 1583.87
//
Query:       MMETSP1137-20121227|3128_1  [L=795]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (795 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        66  (0.0160897); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.47u 0.15s 00:00:00.62 Elapsed: 00:00:00.43
# Mc/sec: 2440.26
//
Query:       MMETSP1137-20121227|3129_1  [L=174]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.029   11.5   0.0      0.041   11.0   0.0    1.4  1  TIGR03756 conj_TIGR03756: integrating conjugative element protein, PFL_4710 family


Domain annotation for each model (and alignments):
>> TIGR03756  conj_TIGR03756: integrating conjugative element protein, PFL_4710 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0     1e-05     0.041      95     168 ..      98     163 ..      53     174 .] 0.79

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 1e-05
   TIGR03756  95 kqtkkresnlerfknvdviGhPagallsklakasgylcksaatpfvPYylstlDalawrteipEllYpealipg 168
                 k +k++e++++  k++++ G Pa a+     ++  y+ +++++p +P    tlD+l   +e +++lYp  l p 
  MMETSP1137-20121227|3129_1  98 KLNKQKEKDETAAKEAEAAGAPAPAA-----SIRDYSKEKKSQPCIP---ETLDTLLLSHEDADSLYPSMLGPA 163
                 3455556666689**********987.....6899999999999999...699***************998775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (174 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       167  (0.0407118); expected 82.0 (0.02)
Passed bias filter:                      114  (0.0277913); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.21u 0.15s 00:00:00.36 Elapsed: 00:00:00.54
# Mc/sec: 425.30
//
Query:       MMETSP1137-20121227|3130_1  [L=41]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (41 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        31  (0.00755729); expected 82.0 (0.02)
Passed bias filter:                       29  (0.00706972); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.16s 00:00:00.27 Elapsed: 00:00:00.41
# Mc/sec: 131.99
//
Query:       MMETSP1137-20121227|3132_1  [L=415]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (415 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       120  (0.029254); expected 82.0 (0.02)
Passed bias filter:                      100  (0.0243784); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.14s 00:00:00.45 Elapsed: 00:00:00.53
# Mc/sec: 1033.50
//
Query:       MMETSP1137-20121227|3133_1  [L=129]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.2e-05   23.4   0.0    1.8e-05   22.8   0.0    1.2  1  TIGR02174 CXXU_selWTH: selT/selW/selH selenoprotein domain


Domain annotation for each model (and alignments):
>> TIGR02174  CXXU_selWTH: selT/selW/selH selenoprotein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.8   0.0   4.4e-09   1.8e-05       9      55 ..      55     100 ..      53     107 .. 0.92

  Alignments for each domain:
  == domain 1    score: 22.8 bits;  conditional E-value: 4.4e-09
   TIGR02174   9 cgYkrraeelkqaleeefpdleiegenlkpdstGaFEitlngklvws 55 
                  g++ +a +l++++++ +pd+ +++++ kp ++G+F +t n k v s
  MMETSP1137-20121227|3133_1  55 TGFQDTASKLETLVKKDVPDVVVTVNPEKP-RKGCFQVTANQKVVVS 100
                 589999************************.**********998866 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (129 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       175  (0.0426621); expected 82.0 (0.02)
Passed bias filter:                      135  (0.0329108); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.15u 0.17s 00:00:00.32 Elapsed: 00:00:00.32
# Mc/sec: 532.08
//
Query:       MMETSP1137-20121227|3134_1  [L=85]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (85 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        53  (0.0129205); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.17s 00:00:00.29 Elapsed: 00:00:00.79
# Mc/sec: 142.01
//
Query:       MMETSP1137-20121227|3135_1  [L=244]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (244 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       138  (0.0336421); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.16s 00:00:00.37 Elapsed: 00:00:00.56
# Mc/sec: 565.01
//
Query:       MMETSP1137-20121227|3136_1  [L=306]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (306 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       103  (0.0251097); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.17s 00:00:00.42 Elapsed: 00:00:00.31
# Mc/sec: 1302.86
//
Query:       MMETSP1137-20121227|3137_1  [L=65]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (65 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        38  (0.00926377); expected 82.0 (0.02)
Passed bias filter:                       36  (0.00877621); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.15s 00:00:00.28 Elapsed: 00:00:00.50
# Mc/sec: 171.59
//
Query:       MMETSP1137-20121227|3138_1  [L=129]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (129 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        92  (0.0224281); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.16s 00:00:00.32 Elapsed: 00:00:00.32
# Mc/sec: 532.08
//
Query:       MMETSP1137-20121227|3139_1  [L=254]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.6e-57  192.6   0.0    1.9e-57  192.3   0.0    1.0  1  TIGR00044 TIGR00044: pyridoxal phosphate enzyme, YggS family


Domain annotation for each model (and alignments):
>> TIGR00044  TIGR00044: pyridoxal phosphate enzyme, YggS family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  192.3   0.0   4.7e-61   1.9e-57       8     229 .]      25     248 ..      20     248 .. 0.95

  Alignments for each domain:
  == domain 1    score: 192.3 bits;  conditional E-value: 4.7e-61
   TIGR00044   8 leaiktkieaaavevnrnaekvkllaVsKtkpasaIqeaydagqreFgEnyvQelveKiklleelgklewhfigqlqsnkdrlvvenfdlvhtiDslkiAkklneqreklkk..plnvllQinisdeesKSGlqreelleevaql.eelkhlklkGLmtIgaltdseeeqeesfrelkklfeklkqask.lslidkLSmGmsdDfeeAIaaGatmvRiGtaiFgaR 229
                 l+ +k +ieaaa   +r+++   l+aVsKtk +  +q+ay  gqr FgEnyv e v K+  ++ + + ++++ +q+++ k++l v+ ++ +ht+Ds+k+A  l++++++ +   pl v++Q+n+s eesKSG  + e+ ++va++   +  l+++GLm+Ig +  +e      f  l +  e++   +     ++ LSmGms DfeeA+aaGat vR+G++iFgaR
  MMETSP1137-20121227|3139_1  25 LKSVKSRIEAAALASGREPPA--LIAVSKTKGVPLLQAAYAVGQRCFGENYVHEVVAKAPEMPADARFHFIGHLQTNKVKELLSVPSLECIHTVDSAKLAAELQKRAAQVRRdrPLAVMVQVNTSGEESKSGCAPSEVEKLVAEItSSCAXLRVCGLMCIGKYSADEGGAGADFSCLVECRERVAAWLGvEAASLSLSMGMSHDFEEAVAAGATHVRVGSTIFGAR 248
                 6789999*****999999995..9************************************************************************************998888*******************************9*****************************999999999887651457899*****************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (254 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       125  (0.0304729); expected 82.0 (0.02)
Passed bias filter:                      106  (0.0258411); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.22u 0.17s 00:00:00.39 Elapsed: 00:00:00.54
# Mc/sec: 620.84
//
Query:       MMETSP1137-20121227|3140_1  [L=725]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (725 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        90  (0.0219405); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.16s 00:00:00.59 Elapsed: 00:00:00.62
# Mc/sec: 1543.42
//
Query:       MMETSP1137-20121227|3141_1  [L=301]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (301 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        74  (0.01804); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.14s 00:00:00.38 Elapsed: 00:00:00.54
# Mc/sec: 735.72
//
Query:       MMETSP1137-20121227|3142_1  [L=574]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (574 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        54  (0.0131643); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.15s 00:00:00.51 Elapsed: 00:00:00.44
# Mc/sec: 1721.86
//
Query:       MMETSP1137-20121227|3143_1  [L=209]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0016   16.4   0.0     0.0032   15.5   0.0    1.5  1  TIGR01068 thioredoxin: thioredoxin


Domain annotation for each model (and alignments):
>> TIGR01068  thioredoxin: thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   7.7e-07    0.0032      30      88 ..     106     163 ..      78     169 .. 0.81

  Alignments for each domain:
  == domain 1    score: 15.5 bits;  conditional E-value: 7.7e-07
   TIGR01068  30 kmlaPvleelakeleekvkvvKlnvdeeqeiaakygirsiPtlllfkngkevkrvvGak 88 
                 k++   +++la  ++ ++++v ++ ++ + ++ + +i  +Pt++ +k  k+ k+  G+ 
  MMETSP1137-20121227|3143_1 106 KIMKEHMANLA-ARHLEARFVWVDAENAPFLTDRLNIYMLPTIVCVKGNKVHKQHNGLD 163
                 55666666777.4455799********************************99999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (209 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       365  (0.088981); expected 82.0 (0.02)
Passed bias filter:                      202  (0.0492443); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.24u 0.20s 00:00:00.44 Elapsed: 00:00:00.40
# Mc/sec: 689.64
//
Query:       MMETSP1137-20121227|3144_1  [L=356]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0003   17.5   0.1     0.0014   15.3   0.0    2.0  1  TIGR01179 galE: UDP-glucose 4-epimerase


Domain annotation for each model (and alignments):
>> TIGR01179  galE: UDP-glucose 4-epimerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   3.4e-07    0.0014     118     258 ..     137     279 ..     119     295 .. 0.64

  Alignments for each domain:
  == domain 1    score: 15.3 bits;  conditional E-value: 3.4e-07
   TIGR01179 118 FsssaavYgesekvpisEespln.pinpYGrsklmvErilkdlkka.dkelkvviLRYFnvaGAdeeg..eiGeaskna..thlik....lvaevavgkrekleifGtdyptkDGtcvRDyiHveDlaeaHlaalealeeggesevynlGa 258
                 F s+++vYg++    ++E+s +  + +     +l +E+    l+++   +l+  + R   + G   +   ++G +  +a  t  ++    l+a++av +   le   t y ++        iHv+D+a a la+++a +e+++++vyn+  
  MMETSP1137-20121227|3144_1 137 FLSTTSVYGDHAGCWVNEQSHTRvSPDSKASQRLSAEQAWLSLRDStGGQLRSHVFRLAGIYGPGRSAldTVGSEAAEAgqTDSVEaasiLAARAAVRESTPLEASATKYVSR--------IHVDDIARALLASMQAPAESADAAVYNVAD 279
                 66777777777777777777666333344445566666655554431346677777776666655554445665443330033332111123444555555555555555544........9**************************975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (356 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        86  (0.0209654); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.28u 0.15s 00:00:00.43 Elapsed: 00:00:00.35
# Mc/sec: 1342.52
//
Query:       MMETSP1137-20121227|3145_1  [L=205]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (205 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        81  (0.0197465); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.14s 00:00:00.34 Elapsed: 00:00:00.31
# Mc/sec: 872.83
//
Query:       MMETSP1137-20121227|3146_1  [L=262]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (262 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        62  (0.0151146); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.15s 00:00:00.35 Elapsed: 00:00:00.31
# Mc/sec: 1115.52
//
Query:       MMETSP1137-20121227|3147_1  [L=269]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.5e-55  185.7   0.2    3.1e-55  185.4   0.1    1.0  1  TIGR00198 cat_per_HPI: catalase/peroxidase HPI


Domain annotation for each model (and alignments):
>> TIGR00198  cat_per_HPI: catalase/peroxidase HPI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  185.4   0.1   7.6e-59   3.1e-55      44     182 ..      83     221 ..      74     242 .. 0.91

  Alignments for each domain:
  == domain 1    score: 185.4 bits;  conditional E-value: 7.6e-59
   TIGR00198  44 dyaeefekldlaavkkdlkelltesqdwwpadfghyggllirlawhaagtyriidgrggaadgsqrfaplnswpdnvnldkarrllwpikkkygrklswadliilagtvaledmglkvfgfaagredifepdkdvdwga 182
                  y  ++ ++d++avk d+++ll +s++ wpad+g+yg+l++rlawh++g+yr  dgrgg + g+qrf p  sw dn nldkar llwpik+kyg  lsw+dl+ilagt a+e+mg  v gf+agr d  + + + + g+
  MMETSP1137-20121227|3147_1  83 AYETALANIDFEAVKSDIRALLLKSEPHWPADYGNYGPLMVRLAWHCSGSYRLSDGRGGCGGGRQRFDPERSWEDNTNLDKARSLLWPIKRKYGLGLSWGDLFILAGTTAIESMGGPVLGFCAGRLDDADGEWSAELGP 221
                 588999***********************************************************************************************************************99666665555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (269 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        43  (0.0104827); expected 82.0 (0.02)
Passed bias filter:                       41  (0.00999512); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.24u 0.17s 00:00:00.41 Elapsed: 00:00:00.50
# Mc/sec: 710.10
//
Query:       MMETSP1137-20121227|3149_1  [L=674]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (674 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       116  (0.0282789); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.15s 00:00:00.59 Elapsed: 00:00:00.53
# Mc/sec: 1678.50
//
Query:       MMETSP1137-20121227|3151_1  [L=351]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (351 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        76  (0.0185275); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.12s 00:00:00.38 Elapsed: 00:00:00.38
# Mc/sec: 1219.16
//
Query:       MMETSP1137-20121227|3152_1  [L=541]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (541 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       140  (0.0341297); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.15s 00:00:00.52 Elapsed: 00:00:00.44
# Mc/sec: 1622.87
//
Query:       MMETSP1137-20121227|3153_1  [L=452]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (452 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       143  (0.034861); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.17s 00:00:00.49 Elapsed: 00:00:00.50
# Mc/sec: 1193.18
//
Query:       MMETSP1137-20121227|3154_1  [L=620]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0044   14.6   0.0       0.16    9.6   0.0    2.3  2  TIGR03665 arCOG04150: arCOG04150 universal archaeal KH domain protein


Domain annotation for each model (and alignments):
>> TIGR03665  arCOG04150: arCOG04150 universal archaeal KH domain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.6   0.0   3.8e-05      0.16     104     158 ..     139     192 ..     135     200 .. 0.95
   2 !    2.4   0.0    0.0062        26     101     126 ..     213     238 ..     205     270 .. 0.73

  Alignments for each domain:
  == domain 1    score: 9.6 bits;  conditional E-value: 3.8e-05
   TIGR03665 104 IGeeGktrkiieeltgvkisvygktvsiiGeieqvkiareAiemlieGkkhstvy 158
                 +G++G tr+ +   +g  +   g+   i G+ e+ + ar+ ++ l++ ++h++vy
  MMETSP1137-20121227|3154_1 139 LGKDGTTRRKLARASGCIMEYVGQVAFICGTLEERTRARTYLKWLLK-QRHGSVY 192
                 69********************************************9.7899999 PP

  == domain 2    score: 2.4 bits;  conditional E-value: 0.0062
   TIGR03665 101 griIGeeGktrkiieeltgvkisvyg 126
                 g + G+ G + +++ee++g+   v+g
  MMETSP1137-20121227|3154_1 213 GYVTGNRGASLRQVEEMSGTFCFVEG 238
                 66788888888888888888888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (620 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        94  (0.0229157); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.17s 00:00:00.57 Elapsed: 00:00:01.15
# Mc/sec: 705.46
//
Query:       MMETSP1137-20121227|3155_1  [L=778]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (778 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       118  (0.0287665); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.15s 00:00:00.60 Elapsed: 00:00:00.52
# Mc/sec: 1974.76
//
Query:       MMETSP1137-20121227|3156_1  [L=479]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (479 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       163  (0.0397367); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.14s 00:00:00.47 Elapsed: 00:00:00.48
# Mc/sec: 1317.14
//
Query:       MMETSP1137-20121227|3157_1  [L=209]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (209 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        55  (0.0134081); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.14s 00:00:00.34 Elapsed: 00:00:00.35
# Mc/sec: 788.16
//
Query:       MMETSP1137-20121227|3158_1  [L=486]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   4.8e-140  465.1   0.0   5.5e-140  464.9   0.0    1.0  1  TIGR00414 serS: serine--tRNA ligase
      1e-07   28.6   0.0    2.4e-07   27.4   0.0    1.6  2  TIGR00415 serS_MJ: serine--tRNA ligase
    1.7e-07   28.4   0.0    2.6e-07   27.7   0.0    1.2  1  TIGR00418 thrS: threonine--tRNA ligase
    5.2e-07   26.7   0.0      4e-06   23.8   0.0    2.1  2  TIGR00409 proS_fam_II: proline--tRNA ligase
      0.001   15.8   0.0     0.0014   15.4   0.0    1.2  1  TIGR00408 proS_fam_I: proline--tRNA ligase
     0.0019   15.2   2.0     0.0028   14.6   1.4    1.2  1  TIGR01554 major_cap_HK97: phage major capsid protein, HK97 family
  ------ inclusion threshold ------
      0.011   11.2   2.3      0.015   10.8   1.6    1.0  1  TIGR02169 SMC_prok_A: chromosome segregation protein SMC
      0.048   10.0   0.0       0.12    8.6   0.0    1.5  1  TIGR00389 glyS_dimeric: glycine--tRNA ligase


Domain annotation for each model (and alignments):
>> TIGR00414  serS: serine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  464.9   0.0  1.1e-142  5.5e-140       2     418 .]      50     480 ..      49     480 .. 0.93

  Alignments for each domain:
  == domain 1    score: 464.9 bits;  conditional E-value: 1.1e-142
   TIGR00414   2 ldlkllrenlelvkeklkarglsvei..dleklselddklkkllskieelqkkrnelskeigkkkaekkdk.ieelkkelkelkeeleeleaelkeleeeleekllkipnlvaesvpvgkdeednlevkkegekksfdfkpkdHvellekldlldferavkvagsrfvvlknkgakler.ALinfmLdlle.kkgysevvvPvlvnkellsgtgqlpkfeedifkveded....lyLiaTaEvplanlhaneileeeelpikyaavspcFRkEAGsaGkdtkGliRvHqFeKvElvkfvkpeesaeeleeliedaekilkeLelPyrvvnlcsgdlgfsaakkyDlEvWlpaqnkYrEisScSnctdfQarrlkirykekkkkk.....kkyvhtlNgtalavgRvlvailEnyqeedGkvevPevLrkyl 418
                 ld +l+ e++++v ++l+ar+ s ++   ++++ +l +++ +l ++ +e++++r++ls++igk ++e+    ++e k+++ ++ e+ +e++a++ ++e+e + +  ++pnl+++ +p g  ee+n+ev+ +g   +  +  k H e++ +l+lld+e+a+k++gsrf+vlk+ +a+  r ALi+f +d+++ ++gy+ev+vP+lv  e l+gtgqlpkfeed+fk+ +       yLi+TaEvpl+n+ha+eil+e +lpi y+av+pcFR+EAGs+Gkdt+Gl+R+HqF+KvElv ++ pe+s e++ +l+e+aek l++L+lPyr+++lcsgd+gfsa  +yDlEvWlp+q+++rEisScSnc  fQarr++ r++ + ++          ht+Ng++lavgR+lvailEnyq+edG+v+vPevLr+y+
  MMETSP1137-20121227|3158_1  50 LDERLVSEEPDVVLASLRARKSSDDLlnAVHRIGDLTRERARLVEEGNEARAERKALSNQIGKLMKEGDTAaVDEQKAQVAKATERAAEADAKVADIEAERSALFDTMPNLLDPRTPEGGGEEENVEVSSWGCDGELPTGRKWHDEVASNLGLLDMEAAAKLSGSRFAVLKKGLARAARaALISFFIDMHAtNHGYTEVMVPYLVGAEALRGTGQLPKFEEDLFKLSEPLngrqGYLIPTAEVPLTNIHAGEILDESDLPIAYVAVTPCFRAEAGSHGKDTRGLFRQHQFHKVELVRICTPEQSDEQHHALVEHAEKCLQALKLPYRKMKLCSGDIGFSARLCYDLEVWLPGQERFREISSCSNCGSFQARRMNLRFRPTPEGAgkkpkPINCHTINGSGLAVGRTLVAILENYQNEDGSVTVPEVLRPYM 480
                 6888999***************887522577888999999999999999**************6666665559999***************************************************************************************************987637*********989********************************9764335559**********************************************************************************************************************************************9765443212334579*************************************8 PP

>> TIGR00415  serS_MJ: serine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0      0.68   3.5e+02     226     272 ..     229     275 ..     223     279 .. 0.77
   2 !   27.4   0.0   4.7e-10   2.4e-07     307     396 ..     283     375 ..     265     387 .. 0.86

  Alignments for each domain:
  == domain 1    score: -2.8 bits;  conditional E-value: 0.68
   TIGR00415 226 raleeliveevvkklgfveclfpklipleimykmryleglpegmyyv 272
                  al  ++++    + g+ e++ p l+  e +     l  + e ++ +
  MMETSP1137-20121227|3158_1 229 AALISFFIDMHATNHGYTEVMVPYLVGAEALRGTGQLPKFEEDLFKL 275
                 5889999999999************9988877666666666666555 PP

  == domain 2    score: 27.4 bits;  conditional E-value: 4.7e-10
   TIGR00415 307 pgyvlapaqcepfyqflegevvd.vdkpvkffdrsgwtyrweagg....akgldrvneflrvelvwlaepeeveeirdktlklaedlaekleley 396
                  gy++      p+ ++  ge++d  d+p+ +   +   +r eag     ++gl r ++f +velv ++ pe+ +e     +++ae+  + l+l y
  MMETSP1137-20121227|3158_1 283 QGYLIPT-AEVPLTNIHAGEILDeSDLPIAYVAVT-PCFRAEAGShgkdTRGLFRQHQFHKVELVRICTPEQSDEQHHALVEHAEKCLQALKLPY 375
                 4776655.55699**********89*****98765.689***995334479**************************************999987 PP

>> TIGR00418  thrS: threonine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.7   0.0   5.1e-10   2.6e-07     205     352 ..     230     381 ..     188     388 .. 0.83

  Alignments for each domain:
  == domain 1    score: 27.7 bits;  conditional E-value: 5.1e-10
   TIGR00418 205 klledfvrekllkrgyeevetPiladlelweisghldkykermfrfke.eeekelvlkpmnCpghilifksslrsyrdLPlrlaelgvvhRyEk..sGe.LvGLkRvRgftldDaHifctedQikeEiknalrliqkvlkklglseekvels 352
                 +l+  f+ ++ ++ gy ev+ P l+  e  + +g l k++e+ f+ +e  + ++ +l p + +    i   +++   dLP+  + ++ ++R E+  +G+   GL R  +f       +ct +Q +e  ++ ++ + k l++l+l   k++l 
  MMETSP1137-20121227|3158_1 230 ALISFFIDMHATNHGYTEVMVPYLVGAEALRGTGQLPKFEEDLFKLSEpLNGRQGYLIPTAEVPLTNIHAGEILDESDLPIAYVAVTPCFRAEAgsHGKdTRGLFRQHQFHKVELVRICTPEQSDEQHHALVEHAEKCLQALKLPYRKMKLC 381
                 56788999************************************9887245577788888888899***************************733564378******************************************99999885 PP

>> TIGR00409  proS_fam_II: proline--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.8   0.0   7.8e-09     4e-06      62     205 ..     241     388 ..     232     394 .. 0.87
   2 ?   -0.2   0.0      0.14        72     445     474 ..     449     479 ..     435     480 .. 0.82

  Alignments for each domain:
  == domain 1    score: 23.8 bits;  conditional E-value: 7.8e-09
   TIGR00409  62 nkagaievllpalqsaelWqesgRwdkygeellrlkDr.kerefvLgpthEEvitdlvkneiksYkqlPvnlYqiqtKfRDEiRPRf....GllRgREFimKDaYsFhsdeeslkatyqkldeaYkkifsrlgldfraveADsGaiGGs 205
                  ++g  ev++p l+ ae  + +g + k+ e+l++l +  ++r+  L pt E  +t++ + ei    +lP+    ++  fR E    +    Gl+R   F   +     +  e+ ++++++l e  +k ++ l+l++r ++  sG+iG s
  MMETSP1137-20121227|3158_1 241 TNHGYTEVMVPYLVGAEALRGTGQLPKFEEDLFKLSEPlNGRQGYLIPTAEVPLTNIHAGEILDESDLPIAYVAVTPCFRAEAGSHGkdtrGLFRQHQFHKVELVRICTP-EQSDEQHHALVEHAEKCLQALKLPYRKMKLCSGDIGFS 388
                 578999*****************************986268999**************************************865433334********86666666655.56678888888999*********************966 PP

  == domain 2    score: -0.2 bits;  conditional E-value: 0.14
   TIGR00409 445 GiGvsRlvsaivEqkrDekGii.WpkaiAPy 474
                 G+ v R++ ai+E  ++e+G +  p+ + Py
  MMETSP1137-20121227|3158_1 449 GLAVGRTLVAILENYQNEDGSVtVPEVLRPY 479
                 889***************9976246777776 PP

>> TIGR00408  proS_fam_I: proline--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   2.7e-06    0.0014     101     198 ..     285     384 ..     228     475 .. 0.74

  Alignments for each domain:
  == domain 1    score: 15.4 bits;  conditional E-value: 2.7e-06
   TIGR00408 101 alRPtsEtvlynlykkwvksyrdLPlklnqivnvfRyEk....khtrPllRtrEflfkEaHtlhataeeaeeevlkildlYkelieelLaiPvlvgrkseke 198
                  l Pt+E+ l n+++  +    dLP+ +  ++  fR+E     k tr l R+  f   E   +  t e+++e+  ++++  ++ ++  L +P+ + +    +
  MMETSP1137-20121227|3158_1 285 YLIPTAEVPLTNIHAGEILDESDLPIAYVAVTPCFRAEAgshgKDTRGLFRQHQFHKVELVRI-CTPEQSDEQHHALVEHAEKCLQ-ALKLPYRKMKLCSGD 384
                 477***********************************7555578********9987776555.6778888888888888888887.888888776665555 PP

>> TIGR01554  major_cap_HK97: phage major capsid protein, HK97 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   1.4   5.5e-06    0.0028       2      79 ..      97     174 ..      96     192 .. 0.82

  Alignments for each domain:
  == domain 1    score: 14.6 bits;  conditional E-value: 5.5e-06
   TIGR01554   2 kelreklaelakelkkltedekeeeaeeekkekdalkaeidkleaeierleeaaaeeeakeaasgeagkeeeeeeeak 79 
                 +e r+++++l +++ kl ++++ ++++e+k+++++++++ ++ +a+++++e+++ ++     +  +++++e  +ee++
  MMETSP1137-20121227|3158_1  97 NEARAERKALSNQIGKLMKEGDTAAVDEQKAQVAKATERAAEADAKVADIEAERSALFDTMPNLLDPRTPEGGGEEEN 174
                 689**************************************************6666555555555555555544443 PP

>> TIGR02169  SMC_prok_A: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   1.6   2.9e-05     0.015     389     475 ..      69     153 ..      26     165 .. 0.65

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 2.9e-05
   TIGR02169 389 kelkekleklkeelnelkreldrlleelkrleeelaelkaelerieekiaeleeeleelaeeikkaeqkleqlkedlekaekelrkl 475
                  +    l ++ +++ +l re+ rl ee +++++e++ l +++ ++ ++     ++++e +++++ka++++ ++ ++++++e+e ++l
  MMETSP1137-20121227|3158_1  69 RKSSDDLLNAVHRIGDLTRERARLVEEGNEARAERKALSNQIGKLMKEGDT--AAVDEQKAQVAKATERAAEADAKVADIEAERSAL 153
                 333444555567777777777777777777777777777777776655443..3455555666666666666666666666665544 PP

>> TIGR00389  glyS_dimeric: glycine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   0.0   0.00024      0.12     155     234 ..     282     364 ..     276     380 .. 0.75

  Alignments for each domain:
  == domain 1    score: 8.6 bits;  conditional E-value: 0.00024
   TIGR00389 155 kkgylRPEtAqGiFinFkkllefkreklPFgvaqiGksfRnEispr....qgllRvrEFeqaEiefFvdPeekshekFeevkde 234
                 ++gyl P tA     n +    + ++ lP + + +   fR E  ++     gl+R   F+++E+   + Pe+  +++  +v++ 
  MMETSP1137-20121227|3158_1 282 RQGYLIP-TAEVPLTNIHAGEILDESDLPIAYVAVTPCFRAEAGSHgkdtRGLFRQHQFHKVELVRICTPEQSDEQHHALVEHA 364
                 5666666.5666566665555567889***************976422337*******************88777776666554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (486 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       195  (0.0475378); expected 82.0 (0.02)
Passed bias filter:                      139  (0.0338859); expected 82.0 (0.02)
Passed Vit filter:                        21  (0.00511945); expected 4.1 (0.001)
Passed Fwd filter:                         8  (0.00195027); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.49u 0.14s 00:00:00.63 Elapsed: 00:00:00.50
# Mc/sec: 1282.93
//
Query:       MMETSP1137-20121227|3159_1  [L=269]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.2e-06   23.6   0.5    1.6e-05   22.3   0.3    1.8  1  TIGR03162 ribazole_cobC: alpha-ribazole phosphatase
     0.0027   15.4   0.0     0.0045   14.7   0.0    1.4  1  TIGR00249 sixA: phosphohistidine phosphatase SixA


Domain annotation for each model (and alignments):
>> TIGR03162  ribazole_cobC: alpha-ribazole phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.3   0.3   7.8e-09   1.6e-05       1      63 [.      29      88 ..      29     153 .. 0.86

  Alignments for each domain:
  == domain 1    score: 22.3 bits;  conditional E-value: 7.8e-09
   TIGR03162  1 lyLiRHgevevnkgkcYGqtDvpLaekgeeqaaalrekl..edvkfdavvsSplsRcrelAella 63
                ++LiRHg+++  ++     +D+pL+++g eq+++lr+    +  +++ vv+Spls + + A  + 
  MMETSP1137-20121227|3159_1 29 IHLIRHGQTDDSAE-----ADLPLSQTGIEQCEELRRVAptTLEDVELVVCSPLSCALQSACKIF 88
                79********6654.....6****************987667789999*******9988886665 PP

>> TIGR00249  sixA: phosphohistidine phosphatase SixA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0   2.2e-06    0.0045       3      67 ..      29      91 ..      28     123 .. 0.85

  Alignments for each domain:
  == domain 1    score: 14.7 bits;  conditional E-value: 2.2e-06
   TIGR00249  3 lylmrHGeAkekaasDkeRqLtkkGkdeaervaqwLkkagveldrilvSplvRAeqtaeivadal 67
                ++l+rHG+ + +a  + + +L++ G ++ e +      ++ ++++++ Spl  A q a ++ ++ 
  MMETSP1137-20121227|3159_1 29 IHLIRHGQTDDSA--EADLPLSQTGIEQCEELRRVAPTTLEDVELVVCSPLSCALQSACKIFEEQ 91
                789****999888..66689************99999*****************99876665443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (269 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        85  (0.0207216); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.23u 0.15s 00:00:00.38 Elapsed: 00:00:00.43
# Mc/sec: 825.70
//
Query:       MMETSP1137-20121227|3160_1  [L=297]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.1e-14   49.0   0.0    1.3e-13   48.4   0.0    1.2  1  TIGR02160 PA_CoA_Oxy5: phenylacetate-CoA oxygenase/reductase, PaaK subunit
    5.1e-07   26.9   0.0    7.2e-07   26.4   0.0    1.2  1  TIGR02911 sulfite_red_B: sulfite reductase, subunit B
    0.00059   16.7   0.0    0.00077   16.3   0.0    1.1  1  TIGR01941 nqrF: NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit


Domain annotation for each model (and alignments):
>> TIGR02160  PA_CoA_Oxy5: phenylacetate-CoA oxygenase/reductase, PaaK subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.4   0.0   9.3e-17   1.3e-13      42     178 ..      80     217 ..      75     224 .. 0.89

  Alignments for each domain:
  == domain 1    score: 48.4 bits;  conditional E-value: 9.3e-17
   TIGR02160  42 kaeldGeelrrsys.icdavadgeirvavkkieGGlfstwaneeiraGdtlevmaPqGrftskldaerakhyvavaaGsGitPil.aivktvlaaepkstftlvyanrrsasvmfaeeladlkdkypqrfallhvlsre 178
                 k ++dG +  r y+ + d    g+  + vk+ +GG  s+w++e+  +G t+e    + + +++   e +k + ++ aG+GitP+  a+ k + ++ +  ++t++ +n++ ++++++e+l++   k   r++++hv+ + 
  MMETSP1137-20121227|3160_1  80 KDDFDGSDAVRPYTpMSDNNMLGAFELLVKRYDGGAVSQWLHEQ-PVGATVEFKHIKFNIKAQYPFEGKKTFTMICAGTGITPMYqAMWKLIGTEGDDRKVTMLIGNKTPEDILMKEQLEEWATKAGDRLKVVHVVGNK 217
                 5689********98467788899******************998.68******99999999999999999**************8245566666778999***********************************9766 PP

>> TIGR02911  sulfite_red_B: sulfite reductase, subunit B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.4   0.0   5.2e-10   7.2e-07      67     157 ..     114     205 ..      93     220 .. 0.75

  Alignments for each domain:
  == domain 1    score: 26.4 bits;  conditional E-value: 5.2e-10
   TIGR02911  67 gkvtdevfelkegdklflrgpygngfdvdnyk.dkelvvvaggtgvapvkgvveyfaknskevkeldlivgfktredilfkedlaewkekin 157
                 g v++ ++e  +g ++ ++    n      +  +k + ++  gtg++p+   +  +     + +++++++g kt+edil+ke+l+ew  k +
  MMETSP1137-20121227|3160_1 114 GAVSQWLHEQPVGATVEFKHIKFNIKAQYPFEgKKTFTMICAGTGITPMYQAMWKLIGTEGDDRKVTMLIGNKTPEDILMKEQLEEWATKAG 205
                 566666777777766655554444322222331566778899**************99999**************************98865 PP

>> TIGR01941  nqrF: NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0   5.7e-07   0.00077     272     386 ..     149     271 ..     115     286 .. 0.79

  Alignments for each domain:
  == domain 1    score: 16.3 bits;  conditional E-value: 5.7e-07
   TIGR01941 272 elvfigGGaGmaplrshildllkrlkskrkisfwyGarskrevfyeedfdeleaen.dnf.kyhvalsdpl..pednwtG......ytgfihnvlyenylkdhdapediefymcGpplmnaavik 386
                  + +i  G+G++p+   + +l+ +   +rk+ +  G ++ ++++ +e+ +e +++  d + + hv+  +p   p   w+        tg++ ++  ++y   ++a ed++ ++cG p m  a+ +
  MMETSP1137-20121227|3160_1 149 TFTMICAGTGITPMYQAMWKLIGTEGDDRKVTMLIGNKTPEDILMKEQLEEWATKAgDRLkVVHVVGNKPDdpPPPGWEStktytaETGWVDEAKIQKY--AFPAAEDTLVFVCGLPGMYKALCG 271
                 5667999********************************************987762444246888765532233445443344447777777777666..58999*********9999888766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (297 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        67  (0.0163335); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.24u 0.11s 00:00:00.35 Elapsed: 00:00:00.37
# Mc/sec: 1059.48
//
Query:       MMETSP1137-20121227|3161_1  [L=1022]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.014   13.4   0.0      0.056   11.4   0.0    1.9  1  TIGR00229 sensory_box: PAS domain S-box protein


Domain annotation for each model (and alignments):
>> TIGR00229  sensory_box: PAS domain S-box protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   1.4e-05     0.056      14     124 ..     620     738 ..     613     739 .. 0.71

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 1.4e-05
   TIGR00229  14 spdaiivvdeeGnilyvNrafeeifGYsaeeliGrnvle..lipeedreevrerierrle.gerepvs...eerrv....krkdGseiwvevsvspirdaggelgvvgivrDIterkeaee 124
                 ++  + +vd e + +yv++++   +G+++  ++G  ++   + ++e+r e ++++  +l+  ++++     + r +     rkdG+e+w++ +  +++   ++  ++++  + ter ++++
  MMETSP1137-20121227|3161_1 620 VARQVSLVDGELRYTYVSPSLSTALGWQRRAVLGDVSAAkfIGVDELRLEKARVAALILScATSNGGTaslSPRPIeyplLRKDGTEVWFSHKFVRHP--HDRESALIVSYELTERRQMQR 738
                 55567899999**********************987666544455555555555555555443332220112222244669**********9999999..677777777779999999886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1022 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        95  (0.0231594); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.58u 0.15s 00:00:00.73 Elapsed: 00:00:00.66
# Mc/sec: 2043.83
//
Query:       MMETSP1137-20121227|3162_1  [L=179]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (179 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        59  (0.0143832); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.12s 00:00:00.31 Elapsed: 00:00:00.32
# Mc/sec: 738.31
//
Query:       MMETSP1137-20121227|3163_1  [L=612]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   3.3e-204  677.0   0.0     4e-204  676.8   0.0    1.0  1  TIGR01317 GOGAT_sm_gam: glutamate synthase, NADH/NADPH, small subunit
    4.7e-91  303.5   0.0      8e-91  302.7   0.0    1.3  1  TIGR01318 gltD_gamma_fam: glutamate synthase, small subunit
    6.4e-64  214.2   0.1    4.9e-51  171.7   0.0    2.2  2  TIGR01316 gltA: glutamate synthase (NADPH), homotetrameric
    4.2e-55  184.5   0.0      3e-54  181.7   0.0    1.9  1  TIGR03315 Se_ygfK: putative selenate reductase, YgfK subunit
    2.4e-15   53.8   0.1    2.4e-15   53.8   0.1    2.5  4  TIGR03997 mycofact_OYE_2: mycofactocin system FadH/OYE family oxidoreductase 2
    7.5e-09   32.6   3.1    6.5e-07   26.3   0.0    3.2  3  TIGR01292 TRX_reduct: thioredoxin-disulfide reductase
    3.1e-08   30.6   0.2    2.1e-06   24.6   0.0    3.1  4  TIGR04018 Bthiol_YpdA: putative bacillithiol system oxidoreductase, YpdA family
    4.8e-07   26.6   3.8      1e-05   22.2   0.0    3.2  3  TIGR01350 lipoamide_DH: dihydrolipoyl dehydrogenase
    8.2e-07   26.2   2.7    1.5e-05   22.0   0.0    2.4  3  TIGR02053 MerA: mercuric reductase
     0.0002   18.5   0.3      0.002   15.2   0.0    2.4  3  TIGR03169 Nterm_to_SelD: pyridine nucleotide-disulfide oxidoreductase family protein
     0.0034   13.8   2.1       0.97    5.7   0.0    3.2  3  TIGR03140 AhpF: alkyl hydroperoxide reductase, F subunit
     0.0039   13.6   0.1      0.016   11.6   0.0    1.9  2  TIGR01424 gluta_reduc_2: glutathione-disulfide reductase
     0.0043   13.6   0.1     0.0076   12.8   0.1    1.3  1  TIGR01813 flavo_cyto_c: flavocytochrome c
     0.0072   12.8   2.0      0.019   11.3   0.0    2.4  3  TIGR03143 AhpF_homolog: putative alkyl hydroperoxide reductase F subunit
  ------ inclusion threshold ------
       0.01   12.4   0.2      0.021   11.4   0.0    1.5  2  TIGR02734 crtI_fam: phytoene desaturase
      0.016   11.6   0.0      0.033   10.5   0.0    1.4  1  TIGR01423 trypano_reduc: trypanothione-disulfide reductase
      0.086    9.5   1.9        0.1    9.2   0.0    2.0  3  TIGR01438 TGR: thioredoxin and glutathione reductase


Domain annotation for each model (and alignments):
>> TIGR01317  GOGAT_sm_gam: glutamate synthase, NADH/NADPH, small subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  676.8   0.0  1.7e-206    4e-204       1     483 [.      51     539 ..      51     541 .. 0.95

  Alignments for each domain:
  == domain 1    score: 676.8 bits;  conditional E-value: 1.7e-206
   TIGR01317   1 kptGfleykrrkkeerdPltrlkdwkefsepldeksaklqaarcmdcGiPfcknasGcPlnnliPefndlvfrgrwkealdrllktnnfPeftGrvcPaPcegacvlgisedpvtiksielaiidkgfeeGwvkPrppkkrtGkkvavvG.sGPaGlaaadqlnr.aGhtvtvferedrvGGllryGiPnlkldkeiverridlleaeGvdfvtnveiGkdisaeelkedfdavvlatGatkprdlpieGrelegihyamefleaatkal.ldddlkdke.........kikakgkkvvviGGGdtGadcvgtslrhgaasvlqfeilPkpPeerakdnpwPewPkvlrvdyaheeakakygrdpreysiatkelvgddeGkvkavrtvevelkkdedGkyeleevpgseevleadlvllalGfvgpeqallddlgvdkdergnikaeldesetsidGvfaaGdarrGqslivwaineGreaaravdkylmgesv 483
                 k +Gf+ey+r+ +  r P +rl d+ e++++ +  ++k+qaarcmdcG+Pfc++++GcP+nnliPefn+lvf+++wk+a ++l  tnnfPeftGrvcPaPceg+cv g+ +++vtik++e+aiid++feeGwvk +pp+ r+Gkkvav+  sGPaG+aaadq+n+  Gh+vtvfer++++GGll+yGiPn+kl ke+v+rr+dl+ +eG++fvt+ve+G d+   e+  +fdavvla+G+t p +lpi+Grel+gi yamefl+ +++ l ++ +   +          +i+a+gk+vvviGGGdtG+dc+gtslrhg++++++fe++PkpP era++npwP wP+++r+dy+heea++k+g dpr+ysi +ke++gd+ G+vkav+tv+v +    +G+  ++ev+gse++++adlv+la+Gf  pe+++ ++l +d d+r+n ka++++++t+ +GvfaaGd+rrGqsl+vwaineGr++a +v  yl ++  
  MMETSP1137-20121227|3163_1  51 KLRGFIEYERNPEPYRPPEERLADYAEINSTHPPLELKRQAARCMDCGTPFCQTHTGCPINNLIPEFNQLVFEDQWKKAYQNLSSTNNFPEFTGRVCPAPCEGSCVAGLVDKSVTIKNMEYAIIDRAFEEGWVKATPPHFRSGKKVAVMAxSGPAGMAAADQMNKkYGHSVTVFERAEKIGGLLTYGIPNMKLSKETVQRRVDLMAEEGINFVTGVEVGADVL--EMTGEFDAVVLAIGSTVPNNLPIPGRELNGIVYAMEFLTYNQQRLfANPEAITNIglvskydgaFISAEGKNVVVIGGGDTGTDCIGTSLRHGCKTLTNFELFPKPPAERAESNPWPAWPRIYRTDYGHEEAAHKFGADPRTYSILSKEFIGDGAGNVKAVKTVQVAIG--ANGR--FQEVEGSEKEWPADLVVLAMGFRHPEHTITSALSLDLDSRNNAKANTKTYRTTAPGVFAAGDCRRGQSLVVWAINEGRAVADQVSLYLNDKEX 539
                 579*************************************************************************************************************************************************8549***********9636******************************************************96..7899***********************************98754414443332223444556669******************************************************************************************************99..8999..99**************************************************************************************98765 PP

>> TIGR01318  gltD_gamma_fam: glutamate synthase, small subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  302.7   0.0   3.3e-93     8e-91       3     465 ..      55     534 ..      53     536 .. 0.88

  Alignments for each domain:
  == domain 1    score: 302.7 bits;  conditional E-value: 3.3e-93
   TIGR01318   3 lielarkepdklaveerktefreiyekfdkdqaqleadrclkcgepycewk..cpvhnaipdwlklvkegrieeaaelshqtntlpeicGrvcpqdrlceGactlkdesgavtiGnleryitdkalakgwrpdlskvkktgkrvaviG.aGpaGlacadvlara.GvkvvvfdrypeiGGlltfGipsfkldkavlarrreileamGiefklnvevGrdvslddlledydavflGvGtyrskkadlpnedlkgvlkalpfliantrqlmglee.........eeeeplidveGkrvvvlGGGdtamdcvrtairlgakkvtcv..y.....rrdean.mpGsrreva.nareeGvefkfnvqple..ievde..dgkvsgvklvrtklgepdakGrrraeivaGseavleadvviiafGfephamewlaehgikldskGrivaaeeselayqtsnpkifaGGdivrGadlvvtavaeGrkaaegildyl 465
                 +ie +r+     + eer  ++ ei ++    + +++a rc++cg p+c+ +  cp+ n ip++ +lv e++ ++a +    tn++pe +Grvcp    ceG+c       +vti n+e  i d+a+++gw    +   ++gk+vav+  +GpaG+a ad +++  G  v+vf+r ++iGGllt+Gip++kl k+ + rr +++ + Gi+f  +vevG dv   +++ ++dav l +G+    +  +p+++l+g++ a+ fl+ n ++l  ++e         + +  +i+ eGk+vvv+GGGdt+ dc+ t++r+g k++t    +      r e+n  p   r  + +   e +  kf   p +  i ++e   + +  vk v+t     +a+Gr +   v+Gse++ +ad v++a+Gf+  +    ++ +++lds+   +a+   +++y+t+ p +fa Gd++rG  lvv a++eGr  a+++  yl
  MMETSP1137-20121227|3163_1  55 FIEYERNPEPYRPPEERLADYAEINSTHPPLELKRQAARCMDCGTPFCQTHtgCPINNLIPEFNQLVFEDQWKKAYQNLSSTNNFPEFTGRVCPA--PCEGSCVAGLVDKSVTIKNMEYAIIDRAFEEGWVKATPPHFRSGKKVAVMAxSGPAGMAAADQMNKKyGHSVTVFERAEKIGGLLTYGIPNMKLSKETVQRRVDLMAEEGINFVTGVEVGADVL--EMTGEFDAVVLAIGSTVPNNLPIPGRELNGIVYAMEFLTYNQQRLFANPEaitniglvsKYDGAFISAEGKNVVVIGGGDTGTDCIGTSLRHGCKTLTNFelFpkppaERAESNpWPAWPRIYRtDYGHEEAAHKFGADPRTysILSKEfiGDGAGNVKAVKTVQVAIGANGRFQ--EVEGSEKEWPADLVVLAMGFRHPEHTITSALSLDLDSRNNAKAN---TKTYRTTAPGVFAAGDCRRGQSLVVWAINEGRAVADQVSLYL 534
                 5666777777778899********************************97666***********************9999**************7..5*****99999999***********************************9648*********9986449*****************************************************84..899***********************************************9*****99888999*********************************9742222222245555525666554431344566667888888651144443222345567788888888889**975..79*******************99999889999999998877776...789*********************************998777 PP

>> TIGR01316  gltA: glutamate synthase (NADPH), homotetrameric
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  171.7   0.0     2e-53   4.9e-51       1     298 [.      67     369 ..      67     387 .. 0.90
   2 !   40.5   0.0   1.4e-13   3.3e-11     331     449 .]     419     534 ..     394     534 .. 0.84

  Alignments for each domain:
  == domain 1    score: 171.7 bits;  conditional E-value: 2e-53
   TIGR01316   1 ppeervkllkevelGytvelalkeaqrclqckdeekpcikGcpvhvdipefiakikeGdlkgalkiikqsdllpaicGrvcpqerqcegacvvgknrkdvgkpvaiGalerfvadyarehGieeeeekapstkkkvaviG.aGpaGlavaselakk.GhevtvfealhkpGGvlayGipefrlpkeivetevkklkklGvkfrldylvGktvtleellekydavfigtGaGlpkllnieGeelkgvysandfltrvn..lmkaye.......fpkkdtpv..evgkkvvviGgGntavdaartalrlGaev 298
                 ppeer  ++ e++  +     +++a rc+ c     +   Gcp++  ipef + + e + k+a++ + +++ +p  +Grvcp    ceg+cv g     v k+v+i ++e  + d a e+G ++ +     ++kkvav+  +GpaG+a a+++ kk Gh+vtvfe  +k GG+l+yGip+++l ke v+  v+ +   G++f ++  vG  v   e+  ++dav +++G+  p+ l i+G el+g+  a++flt  +  l+   e       ++k+d     + gk+vvviGgG t  d+  t+lr G ++
  MMETSP1137-20121227|3163_1  67 PPEERLADYAEINSTHPPLELKRQAARCMDCGTPFCQTHTGCPINNLIPEFNQLVFEDQWKKAYQNLSSTNNFPEFTGRVCPA--PCEGSCVAG----LVDKSVTIKNMEYAIIDRAFEEGWVKATPPHFRSGKKVAVMAxSGPAGMAAADQMNKKyGHSVTVFERAEKIGGLLTYGIPNMKLSKETVQRRVDLMAEEGINFVTGVEVGADV--LEMTGEFDAVVLAIGSTVPNNLPIPGRELNGIVYAMEFLTYNQqrLFANPEaitniglVSKYDGAFisAEGKNVVVIGGGDTGTDCIGTSLRHGCKT 369
                 99**************999999**********9999999*******************************************6..7********....78899***********************************9649**********98655****************************************************887..4899***********************************96431144333321122223556554322458**********************9876 PP

  == domain 2    score: 40.5 bits;  conditional E-value: 1.4e-13
   TIGR01316 331 qpveviGdeeGevkavkfektelqeerdsgekrkvpvtdeevkleadavivaiGqe.ankiiaedsslktskrGtivvd.edletsieGvfaGGdvirGeatvilalgdGkraakaideyl 449
                  + e+iGd  G+vkavk  ++ ++     +  r+  v ++e    ad v++a+G + +++ i+   sl    r   + + + ++t+ +Gvfa Gd  rG++ v+ a+ +G+  a ++  yl
  MMETSP1137-20121227|3163_1 419 LSKEFIGDGAGNVKAVKTVQVAIGA----N-GRFQEVEGSEKEWPADLVVLAMGFRhPEHTITSALSLDLDSRNNAKANtKTYRTTAPGVFAAGDCRRGQSLVVWAINEGRAVADQVSLYL 534
                 4679*************99665543....3.35566778888999*********762677788888**999998888772579********************************999886 PP

>> TIGR03315  Se_ygfK: putative selenate reductase, YgfK subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  181.7   0.0   1.2e-56     3e-54     439     841 ..      94     540 ..      77     607 .. 0.79

  Alignments for each domain:
  == domain 1    score: 181.7 bits;  conditional E-value: 1.2e-56
   TIGR03315 439 ltdcyvaPcvt..gcpinqdiPeyirlvgekkyaealeviveknalPaitGticdhqcqykctrldydeavkirelkkvalekaydeykeklekpqlksekhkvaviG.aGPaGlsagyfla.raGlpvtvfekkekagGvvkniiPefrisaeviqkdlelvkkkGvefklGvsedltvdelkkegykyvvlaiGadkssklklkegner.vlksleflkefkedk...................tklklGkrvvvvGgGntamdaaraalrvpGvekvtvv..y......rrtkkemPaskeeleeal.edGvefkellsPekf........ed..gklvcekmklgekdasGrrrpvetgelveleadaviaavGeqv.dtellkklgieldekgkvvvneetketsvtnvfviGdakkGPativeaiadgrkaakai....lsrenl 841
                  +dc    c+t  gcpin  iPe+ +lv e+++++a++ + + n  P  tG +c  +c+  c     d++v+i+++    + +a++e   k   p+ +s k kvav+  +GPaG++a+  +  + G++vtvfe+ ek+gG +++ iP++++s+e++q+ ++l++++G++f +Gv+   +v e+  e ++ vvlaiG++ +++l + + + + ++ ++efl  +++                      +   Gk+vvv+GgG+t  d+  ++lr +G ++ t    +      r   +  Pa+   ++    ++    k+  +P  +         d  g++++ k    +  a+Gr + ve  e  e +ad v++a+G +  ++ + ++l ++ld ++  + n++t  t+ ++vf +Gd ++G + +v ai +gr++a+++     ++e l
  MMETSP1137-20121227|3163_1  94 CMDCGTPFCQThtGCPINNLIPEFNQLVFEDQWKKAYQNLSSTNNFPEFTGRVCPAPCEGSCVAGLVDKSVTIKNMEYAIIDRAFEEGWVKATPPHFRSGK-KVAVMAxSGPAGMAAADQMNkKYGHSVTVFERAEKIGGLLTYGIPNMKLSKETVQRRVDLMAEEGINFVTGVEVGADVLEMTGE-FDAVVLAIGSTVPNNLPIPGRELNgIVYAMEFLTYNQQRLfanpeaitniglvskydgaFISAEGKNVVVIGGGDTGTDCIGTSLR-HGCKTLTNFelFpkppaeRAESNPWPAWPRIYRTDYgHEEAAHKFGADPRTYsilskefiGDgaGNVKAVKTVQVAIGANGRFQEVEGSEK-EWPADLVVLAMGFRHpEHTITSALSLDLDSRNNAKANTKTYRTTAPGVFAAGDCRRGQSLVVWAINEGRAVADQVslylNDKEXL 540
                 5799999998777***************************************************************************************9.99998648******998886157*********************************************************9988.******************9877552789*****86666559999***********999878889*****************99998.5778777532223333325666778999766654321444444444444433111111114511445555555667889********9886.9***********765266778899*************************************************995433233433 PP

>> TIGR03997  mycofact_OYE_2: mycofactocin system FadH/OYE family oxidoreductase 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.8   0.1   9.9e-18   2.4e-15     365     499 ..     179     315 ..     145     322 .. 0.79
   2 ?   -0.1   0.0       0.2        47     378     403 ..     342     367 ..     319     374 .. 0.81
   3 ?   -3.5   0.0       2.2   5.4e+02     445     476 ..     436     471 ..     429     480 .. 0.58
   4 ?   -2.5   0.0         1   2.5e+02     612     644 ..     496     529 ..     486     530 .. 0.80

  Alignments for each domain:
  == domain 1    score: 53.8 bits;  conditional E-value: 9.9e-18
   TIGR03997 365 relkeavtlkkarrr..kkvlvvG.gGPaGleaaata.arrGhrvtllereeelGGqvklaaklpgreelaelvrdlaselkelgvevklGveadaelvla.ekPDavvlatGsr.parpdlagadservvtvrevltgea 499
                 +e  + v+ +++++r  kkv v+  +GPaG++aa +   + Gh+vt++er+e++GG ++    +p  +  +e v+  +  ++e g++  +Gve+ a++++   + Davvla Gs  p++ +++g++ + +v ++e lt ++
  MMETSP1137-20121227|3163_1 179 EE--GWVKATPPHFRsgKKVAVMAxSGPAGMAAADQMnKKYGHSVTVFERAEKIGGLLT--YGIPNMKLSKETVQRRVDLMAEEGINFVTGVEVGADVLEMtGEFDAVVLAIGSTvPNNLPIPGRELNGIVYAMEFLTYNQ 315
                 44..4445555555556999987538*******97651567***************876..5689999999***************************9861578********9648999**************9998765 PP

  == domain 2    score: -0.1 bits;  conditional E-value: 0.2
   TIGR03997 378 rrkkvlvvGgGPaGleaaataarrGh 403
                 + k+v+v+GgG +G     t+ r G 
  MMETSP1137-20121227|3163_1 342 EGKNVVVIGGGDTGTDCIGTSLRHGC 367
                 449***********998888777775 PP

  == domain 3    score: -3.5 bits;  conditional E-value: 2.2
   TIGR03997 445 gvevklGveadaelvl...aekP.DavvlatGsrpa 476
                  v+v +G++ + ++v+   +e P D vvla G r  
  MMETSP1137-20121227|3163_1 436 TVQVAIGANGRFQEVEgseKEWPaDLVVLAMGFRHP 471
                 466666666666665421133344777777776655 PP

  == domain 4    score: -2.5 bits;  conditional E-value: 1
   TIGR03997 612 lkdkvlevyriGDclaPRr.veaaileGervala 644
                  + +++ v+ +GDc      v  ai eG+ va +
  MMETSP1137-20121227|3163_1 496 YRTTAPGVFAAGDCRRGQSlVVWAINEGRAVADQ 529
                 5778999*******87766256799999999865 PP

>> TIGR01292  TRX_reduct: thioredoxin-disulfide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.0     0.025         6       6      40 ..     200     235 ..     194     293 .. 0.85
   2 ?    1.8   0.1     0.078        19     140     153 ..     342     355 ..     329     361 .. 0.80
   3 !   26.3   0.0   2.7e-09   6.5e-07     217     300 .]     449     534 ..     427     534 .. 0.85

  Alignments for each domain:
  == domain 1    score: 3.4 bits;  conditional E-value: 0.025
   TIGR01292   6 iGaGpaGltaa.iYaaranlktlliegkeaggqltt 40 
                   +GpaG++aa    ++++ ++ ++e++e+ g l t
  MMETSP1137-20121227|3163_1 200 AXSGPAGMAAAdQMNKKYGHSVTVFERAEKIGGLLT 235
                 469*****9994556777888899999988877754 PP

  == domain 2    score: 1.8 bits;  conditional E-value: 0.078
   TIGR01292 140 knkevavvGggdsA 153
                  +k+v+v+Gggd+ 
  MMETSP1137-20121227|3163_1 342 EGKNVVVIGGGDTG 355
                 589********985 PP

  == domain 3    score: 26.3 bits;  conditional E-value: 2.7e-09
   TIGR01292 217 tktkeeeelkvdgvFiaiGhe.pntellkel.leldeegyivvdee.mrTsveGvfaaGDvrdkslrQvvtaagdGaiAalsvekyl 300
                 +++++e+e  +d v +a+G++ p+  + + l l+ld+++  + +++  rT  +GvfaaGD+r+     vv a+++G + a +v+ yl
  MMETSP1137-20121227|3163_1 449 EVEGSEKEWPADLVVLAMGFRhPEHTITSALsLDLDSRNNAKANTKtYRTTAPGVFAAGDCRR-GQSLVVWAINEGRAVADQVSLYL 534
                 56789999***********7615555555559999*****99998879**************9.88899*******99998887765 PP

>> TIGR04018  Bthiol_YpdA: putative bacillithiol system oxidoreductase, YpdA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.0     0.091        22       6      40 ..     201     236 ..     195     249 .. 0.77
   2 ?   -0.4   0.0      0.37        88     113     141 ..     278     305 ..     240     320 .. 0.78
   3 ?   -2.5   0.0       1.5   3.7e+02     153     167 ..     344     358 ..     332     369 .. 0.66
   4 !   24.6   0.0   8.5e-09   2.1e-06     226     310 ..     447     531 ..     427     537 .. 0.86

  Alignments for each domain:
  == domain 1    score: 1.5 bits;  conditional E-value: 0.091
   TIGR04018   6 GaGPiGlaaaieak.kaglsyliiekgalvnsiyky 40 
                  +GP G+aaa +++ k g s++++e+   +  + +y
  MMETSP1137-20121227|3163_1 201 XSGPAGMAAADQMNkKYGHSVTVFERAEKIGGLLTY 236
                 58*******988751569999999998877777777 PP

  == domain 2    score: -0.4 bits;  conditional E-value: 0.37
   TIGR04018 113 eakkvvvatGyydipnllnvpGedlpkvs 141
                 e  +vv+a G   +pn l +pG +l+ + 
  MMETSP1137-20121227|3163_1 278 EFDAVVLAIGS-TVPNNLPIPGRELNGIV 305
                 45679999997.79**********99875 PP

  == domain 3    score: -2.5 bits;  conditional E-value: 1.5
   TIGR04018 153 qkvvvvGgknsavda 167
                 ++vvv+Gg +   d 
  MMETSP1137-20121227|3163_1 344 KNVVVIGGGDTGTDC 358
                 566666666655554 PP

  == domain 4    score: 24.6 bits;  conditional E-value: 8.5e-09
   TIGR04018 226 letpegeveeiendfvlaltGy.rpdlelleklgveleedekipvydeetmEtnveglylaGvvaagletnkifiEngrlhakaii 310
                 +++ eg+++e ++d v++ +G+ +p++++ ++l ++l+++ +++  + +t+ t+ +g++ aG +  g +   + i++gr  a+++ 
  MMETSP1137-20121227|3163_1 447 FQEVEGSEKEWPADLVVLAMGFrHPEHTITSALSLDLDSR-NNAKANTKTYRTTAPGVFAAGDCRRGQSLVVWAINEGRAVADQVS 531
                 567789999*******9999994599999999*****999.68999**********************************999986 PP

>> TIGR01350  lipoamide_DH: dihydrolipoyl dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.2     0.029       6.9       8      50 ..     201     243 ..     195     290 .. 0.59
   2 ?    0.0   0.4      0.23        56     129     150 ..     276     304 ..     243     369 .. 0.56
   3 !   22.2   0.0   4.3e-08     1e-05     244     329 ..     446     530 ..     412     540 .. 0.80

  Alignments for each domain:
  == domain 1    score: 3.1 bits;  conditional E-value: 0.029
   TIGR01350   8 GgGpgGYvaAiraa.qlglkvalvek.eklGGtClnvGCiPtKal 50 
                  +Gp+G  aA +   + g +v++ e+ ek+GG  l +G iP   l
  MMETSP1137-20121227|3163_1 201 XSGPAGMAAADQMNkKYGHSVTVFERaEKIGGL-LTYG-IPNMKL 243
                 478888888877651468888888887777775.4444.554443 PP

  == domain 2    score: 0.0 bits;  conditional E-value: 0.23
   TIGR01350 129 kleakniiiAtGse.prelplk......l 150
                 + e++++++A Gs+ p++lp++      +
  MMETSP1137-20121227|3163_1 276 TGEFDAVVLAIGSTvPNNLPIPgrelngI 304
                 55566666666664255666544222221 PP

  == domain 3    score: 22.2 bits;  conditional E-value: 4.3e-08
   TIGR01350 244 vvveakkkevetleaekvLvavGrkpnleelgleklgveldergaikvd.eelrtnvpgiyaiGDvigklmLAhvAskegvvaaeki 329
                  + e +++ +++  a+ v++a+G++   +     +l ++ld+r+  k + +++rt++pg++a GD+ ++  L   A +eg  +a+++
  MMETSP1137-20121227|3163_1 446 RFQEVEGS-EKEWPADLVVLAMGFRHPEH-TITSALSLDLDSRNNAKANtKTYRTTAPGVFAAGDCRRGQSLVVWAINEGRAVADQV 530
                 23344455.48899*********886655.46799*************97789******************************9987 PP

>> TIGR02053  MerA: mercuric reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   0.0     0.017       4.1     174     232 ..     201     269 ..     184     293 .. 0.67
   2 ?   -4.0   0.2       4.7   1.1e+03      24     181 ..     344     357 ..     340     368 .. 0.55
   3 !   22.0   0.0   6.1e-08   1.5e-05     212     330 ..     417     532 ..     408     545 .. 0.75

  Alignments for each domain:
  == domain 1    score: 4.1 bits;  conditional E-value: 0.017
   TIGR02053 174 GggaiavEla.qlfarlGsevtllqrserl...lkee......epeisaaveellaeeGvevvksakvk 232
                  +g  ++ +a q+ ++ G  vt+ +r+e++   l++       ++e  +   +l+aeeG+++v+ ++v 
  MMETSP1137-20121227|3163_1 201 XSGPAGMAAAdQMNKKYGHSVTVFERAEKIgglLTYGipnmklSKETVQRRVDLMAEEGINFVTGVEVG 269
                 466677765549999************986443554411001133444444578999999999988764 PP

  == domain 2    score: -4.0 bits;  conditional E-value: 4.7
   TIGR02053  24 akvvlverGilGGtCvnvGCvPSKallraaevaklakkasvgllaaevevdleelleqkkevveelRkeKYedvlesydavdllegkakfkdektvkvdlgkevvgakrvliAtGarpavPeipGLkeaeyltseelleldkipeslvviGggaiavE 181
                 ++                                                                                                                                                +vviGgg  +++
  MMETSP1137-20121227|3163_1 344 KN------------------------------------------------------------------------------------------------------------------------------------------------VVVIGGGDTGTD 357
                 44................................................................................................................................................455555544443 PP

  == domain 3    score: 22.0 bits;  conditional E-value: 6.1e-08
   TIGR02053 212 aaveellaeeGvevvksakvkavskrnggkklvtvekndskkeveadellvAtG.RkpnvdgLnLekvgvklderGeilvde.klrtsnpkiyAAGDvikglqlesvAakeGvvaAenalg 330
                  ++++ +  +G   vk++k  +v ++ +g+     e+++s+ke  ad +++A G R+p    +  +++   ld+r +   +  + rt++p+++AAGD+  g +l+  A +eG  +A+ +  
  MMETSP1137-20121227|3163_1 417 SILSKEFIGDGAGNVKAVKTVQVAIGANGRF---QEVEGSEKEWPADLVVLAMGfRHPEHT-I-TSALSLDLDSRNNAKANTkTYRTTAPGVFAAGDCRRGQSLVVWAINEGRAVADQVSL 532
                 5566677778888788887777777544444...6777899*************6667655.3.3555666677777777751689***************************99987655 PP

>> TIGR03169  Nterm_to_SelD: pyridine nucleotide-disulfide oxidoreductase family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0      0.78   1.9e+02     199     254 ..     245     301 ..     196     326 .. 0.64
   2 ?   -0.7   0.0      0.55   1.3e+02     144     162 ..     342     360 ..     332     372 .. 0.78
   3 !   15.2   0.0   8.1e-06     0.002     206     282 ..     431     511 ..     425     540 .. 0.66

  Alignments for each domain:
  == domain 1    score: -1.2 bits;  conditional E-value: 0.78
   TIGR03169 199 rllakrgievlekeevtevedealllae.getleadavllatgakapawLaesglsl 254
                 +   +r+++++ +e ++ v+  ++  +  + t e+dav+la+g+  p+ L   g +l
  MMETSP1137-20121227|3163_1 245 KETVQRRVDLMAEEGINFVTGVEVGADVlEMTGEFDAVVLAIGSTVPNNLPIPGREL 301
                 444555555555555554443333332213356788888888888887776666655 PP

  == domain 2    score: -0.7 bits;  conditional E-value: 0.55
   TIGR03169 144 etkslavvGgGaagvElal 162
                 e k+++v+GgG  g   ++
  MMETSP1137-20121227|3163_1 342 EGKNVVVIGGGDTGTDCIG 360
                 56799******99987665 PP

  == domain 3    score: 15.2 bits;  conditional E-value: 8.1e-06
   TIGR03169 206 ievlekeevtevedealll..aegetleadavllatgakapawLaes..glsldedGflavkktLqslshpevFaaGDcav 282
                 ++ +++ +v+ +++++ +   +++++ +ad v+la+g + p+   +s   l+ld++   + +++   ++ p vFaaGDc  
  MMETSP1137-20121227|3163_1 431 VKAVKTVQVAIGANGRFQEveGSEKEWPADLVVLAMGFRHPEHTITSalSLDLDSRNNAKANTKTYRTTAPGVFAAGDCRR 511
                 5555666666666664443224667899**********99876555500556666666666666666799*********64 PP

>> TIGR03140  AhpF: alkyl hydroperoxide reductase, F subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.0     0.035       8.4     216     264 ..     198     247 ..     169     282 .. 0.78
   2 ?    3.6   0.1     0.018       4.3     346     366 ..     335     357 ..     326     376 .. 0.81
   3 !    5.7   0.0     0.004      0.97     471     488 ..     494     511 ..     429     529 .. 0.82

  Alignments for each domain:
  == domain 1    score: 2.6 bits;  conditional E-value: 0.035
   TIGR03140 216 lvvGgGPagaaaaiyaark.Glkvalv..aeriGGqvkdtvgienlisvket 264
                 ++  +GPag aaa    +k G +v++   ae+iGG    t gi n+   ket
  MMETSP1137-20121227|3163_1 198 VMAXSGPAGMAAADQMNKKyGHSVTVFerAEKIGGLL--TYGIPNMKLSKET 247
                 3456899999999877766588888865589999965..6777777655555 PP

  == domain 2    score: 3.6 bits;  conditional E-value: 0.018
   TIGR03140 346 dGPlf..kgkkvaviGGGnsGie 366
                 dG +   +gk+v viGGG++G +
  MMETSP1137-20121227|3163_1 335 DGAFIsaEGKNVVVIGGGDTGTD 357
                 777753369*********99975 PP

  == domain 3    score: 5.7 bits;  conditional E-value: 0.004
   TIGR03140 471 ergrtsvkGifaaGdvtt 488
                 ++ rt ++G+faaGd+  
  MMETSP1137-20121227|3163_1 494 KTYRTTAPGVFAAGDCRR 511
                 34589***********75 PP

>> TIGR01424  gluta_reduc_2: glutathione-disulfide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0      0.55   1.3e+02     119     152 ..     265     301 ..     196     314 .. 0.66
   2 !   11.6   0.0   6.6e-05     0.016     231     322 ..     437     529 ..     400     539 .. 0.75

  Alignments for each domain:
  == domain 1    score: -1.3 bits;  conditional E-value: 0.55
   TIGR01424 119 tvevledgktyta..ekiliavGgrp.vkpelPGael 152
                  vev +d  ++t   + +++a+G+    +  +PG el
  MMETSP1137-20121227|3163_1 265 GVEVGADVLEMTGefDAVVLAIGSTVpNNLPIPGREL 301
                 3555555555554124566677665424445666665 PP

  == domain 2    score: 11.6 bits;  conditional E-value: 6.6e-05
   TIGR01424 231 ksiekvddG.lkvtlskdeeivadvvllatG.rvPnvkglgleaaGvelnda.gaiavdeysrtsvpsiyavGdvtdrinltPvaikeaaafaet 322
                  ++   ++G  + +  +++e  ad v+la+G r+P+       a  ++l+ + +a a  +  rt+ p+++a Gd      l   ai+e++a a+ 
  MMETSP1137-20121227|3163_1 437 VQVAIGANGrFQEVEGSEKEWPADLVVLAMGfRHPEHTIT--SALSLDLDSRnNAKANTKTYRTTAPGVFAAGDCRRGQSLVVWAINEGRAVADQ 529
                 4555667774445555889999********9777865543..466677776614455556779****************************9985 PP

>> TIGR01813  flavo_cyto_c: flavocytochrome c
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.8   0.1   3.2e-05    0.0076       5      56 ..     200     251 ..     196     261 .. 0.86

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 3.2e-05
   TIGR01813   5 vGsGlAGlsaaleakkaglaevvvleKapviGGNsaiaaggmnaaktkiQkk 56 
                   sG AG++aa + +k++ ++v v e+a+ iGG       +m ++k ++Q++
  MMETSP1137-20121227|3163_1 200 AXSGPAGMAAADQMNKKYGHSVTVFERAEKIGGLLTYGIPNMKLSKETVQRR 251
                 569******************************8888888888888888876 PP

>> TIGR03143  AhpF_homolog: putative alkyl hydroperoxide reductase F subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0      0.51   1.2e+02     142     177 ..     192     229 ..     187     267 .. 0.74
   2 ?   -1.0   0.1      0.43     1e+02     133     152 ..     331     352 ..     326     357 .. 0.78
   3 !   11.3   0.0   8.1e-05     0.019     254     317 ..     480     543 ..     415     573 .. 0.74

  Alignments for each domain:
  == domain 1    score: -1.2 bits;  conditional E-value: 0.51
   TIGR03143 142 tGldvlviG....gGfaaaeeavfltkyakkvtvivrepd 177
                  G++v v+     +G+aaa++     ky+++vtv  r ++
  MMETSP1137-20121227|3163_1 192 SGKKVAVMAxsgpAGMAAADQ--MNKKYGHSVTVFERAEK 229
                 566666653222367888876..45799999999888765 PP

  == domain 2    score: -1.0 bits;  conditional E-value: 0.43
   TIGR03143 133 catcdGeff..tGldvlviGgG 152
                  +  dG f   +G++v+viGgG
  MMETSP1137-20121227|3163_1 331 VSKYDGAFIsaEGKNVVVIGGG 352
                 5677999974479*******99 PP

  == domain 3    score: 11.3 bits;  conditional E-value: 8.1e-05
   TIGR03143 254 kvelderGyvvtn.edletnveGvyaaGdlrvkelrqvvtavadGaiaateleryvkelkeklGi 317
                  ++ld r    +n ++ +t  +Gv+aaGd r  +   vv a+ +G   a ++  y+++++  l i
  MMETSP1137-20121227|3163_1 480 SLDLDSRNNAKANtKTYRTTAPGVFAAGDCRRGQ-SLVVWAINEGRAVADQVSLYLNDKEXLLVI 543
                 466677766655415679************9765.569******************998876655 PP

>> TIGR02734  crtI_fam: phytoene desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   8.5e-05     0.021       5      35 ..     201     232 ..     197     236 .. 0.88
   2 ?   -3.5   0.0       2.7   6.4e+02     250     281 ..     446     476 ..     429     497 .. 0.66

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 8.5e-05
   TIGR02734   5 GaGlgGLAlAirLaaa.GievtvlekrdkpGG 35 
                  +G +G+A+A +++++ G++vtv+e+ +k+GG
  MMETSP1137-20121227|3163_1 201 XSGPAGMAAADQMNKKyGHSVTVFERAEKIGG 232
                 58***********8755**************9 PP

  == domain 2    score: -3.5 bits;  conditional E-value: 2.7
   TIGR02734 250 rataveledgerleadavvsnaDlvhtykkll 281
                 r  + +++++++ +ad+vv++  + h ++++ 
  MMETSP1137-20121227|3163_1 446 RF-QEVEGSEKEWPADLVVLAMGFRHPEHTIT 476
                 33.34455668899999999988888776655 PP

>> TIGR01423  trypano_reduc: trypanothione-disulfide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   0.00014     0.033     253     348 ..     435     530 ..     404     537 .. 0.76

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 0.00014
   TIGR01423 253 npakveknadgskhvvfesgkeldvdvvmlaig.rlprsqtlqldkvgveladkgaikvdeysktnvdniyaigdvtdrvmltpvainegaavvdtv 348
                 +  +v   a+g  + v  s ke   d+v+la+g r p           ++  ++   +     +t  + ++a gd      l   aineg av d v
  MMETSP1137-20121227|3163_1 435 KTVQVAIGANGRFQEVEGSEKEWPADLVVLAMGfRHPEHTITSALSLDLDSRNNAKANTKT-YRTTAPGVFAAGDCRRGQSLVVWAINEGRAVADQV 530
                 456677778888788888999999********96677655554444555555554445444.58999***************************987 PP

>> TIGR01438  TGR: thioredoxin and glutathione reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.1       1.7     4e+02       7      33 ..     199     226 ..     197     238 .. 0.78
   2 ?   -4.0   0.1       4.5   1.1e+03       5      27 ..     346     368 ..     345     371 .. 0.78
   3 ?    9.2   0.0   0.00043       0.1     269     342 ..     459     530 ..     429     541 .. 0.77

  Alignments for each domain:
  == domain 1    score: -2.6 bits;  conditional E-value: 1.7
   TIGR01438   7 viGgGsGGlaaakea.aklgakvllldf 33 
                 +  +G+ G+aaa +   k+g  v +++ 
  MMETSP1137-20121227|3163_1 199 MAXSGPAGMAAADQMnKKYGHSVTVFER 226
                 5568999**9998761579999999876 PP

  == domain 2    score: -4.0 bits;  conditional E-value: 4.5
   TIGR01438   5 liviGgGsGGlaaakeaaklgak 27 
                 ++viGgG  G  +   +  +g k
  MMETSP1137-20121227|3163_1 346 VVVIGGGDTGTDCIGTSLRHGCK 368
                 699****9999988777777665 PP

  == domain 3    score: 9.2 bits;  conditional E-value: 0.00043
   TIGR01438 269 ydtvlyaiGrkadlkklnlenvgvkvnkksgkiladelertnvpsiyavGdivedkleltpvaikaGklladrl 342
                  d v++a+G +   +++   ++++ ++ +++    ++  rt+ p+++a Gd  ++ + l   ai+ G+ +ad++
  MMETSP1137-20121227|3163_1 459 ADLVVLAMGFRHPEHTIT-SALSLDLDSRNNAKANTKTYRTTAPGVFAAGDCRRG-QSLVVWAINEGRAVADQV 530
                 477889999766666664.6789999******9******************9876.679999********9963 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (612 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       144  (0.0351048); expected 82.0 (0.02)
Passed bias filter:                      114  (0.0277913); expected 82.0 (0.02)
Passed Vit filter:                        28  (0.00682594); expected 4.1 (0.001)
Passed Fwd filter:                        17  (0.00414432); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              17  [number of targets reported over threshold]
# CPU time: 0.77u 0.17s 00:00:00.94 Elapsed: 00:00:00.93
# Mc/sec: 868.57
//
Query:       MMETSP1137-20121227|3164_1  [L=182]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        2.2    5.2  10.3        2.5    5.0   7.2    1.1  1  TIGR01347 sucB: dihydrolipoyllysine-residue succinyltransferase, E2 component of oxoglutarate dehydrogenase (succinyl-transferring) complex


Domain annotation for each model (and alignments):
>> TIGR01347  sucB: dihydrolipoyllysine-residue succinyltransferase, E2 component of oxoglutarate dehydrogenase (succinyl-transferring) complex
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   7.2   0.00062       2.5      81     160 ..      40     118 ..       6     157 .. 0.38

  Alignments for each domain:
  == domain 1    score: 5.0 bits;  conditional E-value: 0.00062
   TIGR01347  81 aeaasekskeekeekaaakaek...akeaaekkkalspaarklakeegidleavektkktgrvtkedivkkeekkasaakeaa 160
                 a+a++++++++ ++ aaa+a++   a++aa++++a++ a + +a+ ++ ++++++ +    + t + +++++++ a+aa++aa
  MMETSP1137-20121227|3164_1  40 ATATAAAAAAATAPPAAATAAAaaaATTAAAAAAAAAAAGAATATAAAAAAATAPPA----AATAAAAAAATTAAAAAAAAAA 118
                 112222222222222222222200022222221222222222222222222222222....2222222222222212222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (182 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       594  (0.144807); expected 82.0 (0.02)
Passed bias filter:                      120  (0.029254); expected 82.0 (0.02)
Passed Vit filter:                        60  (0.014627); expected 4.1 (0.001)
Passed Fwd filter:                        33  (0.00804486); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.81u 0.15s 00:00:00.96 Elapsed: 00:00:01.15
# Mc/sec: 207.09
//
Query:       MMETSP1137-20121227|3165_1  [L=154]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (154 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        71  (0.0173086); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.21s 00:00:00.32 Elapsed: 00:00:00.44
# Mc/sec: 461.96
//
Query:       MMETSP1137-20121227|3166_1  [L=613]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (613 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       162  (0.0394929); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.22s 00:00:00.52 Elapsed: 00:00:00.53
# Mc/sec: 1526.59
//
Query:       MMETSP1137-20121227|3167_1  [L=165]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (165 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        67  (0.0163335); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.17s 00:00:00.29 Elapsed: 00:00:00.30
# Mc/sec: 725.94
//
Query:       MMETSP1137-20121227|3168_1  [L=157]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (157 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        79  (0.0192589); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.18s 00:00:00.28 Elapsed: 00:00:00.28
# Mc/sec: 740.08
//
Query:       MMETSP1137-20121227|3169_1  [L=568]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (568 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        96  (0.0234032); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.15s 00:00:00.49 Elapsed: 00:00:00.59
# Mc/sec: 1270.67
//
Query:       MMETSP1137-20121227|3170_1  [L=113]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (113 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       160  (0.0390054); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.13s 00:00:00.28 Elapsed: 00:00:00.32
# Mc/sec: 466.09
//
Query:       MMETSP1137-20121227|3171_1  [L=741]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (741 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       116  (0.0282789); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.15s 00:00:00.60 Elapsed: 00:00:01.01
# Mc/sec: 968.36
//
Query:       MMETSP1137-20121227|3172_1  [L=277]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.9e-09   35.0   0.0    2.7e-09   34.5   0.0    1.2  1  TIGR01934 MenG_MenH_UbiE: ubiquinone/menaquinone biosynthesis methyltransferase
    8.5e-08   29.6   0.0    1.3e-07   29.0   0.0    1.3  1  TIGR01983 UbiG: 3-demethylubiquinone-9 3-O-methyltransferase
    1.4e-05   22.5   0.0    2.1e-05   21.9   0.0    1.2  1  TIGR02021 BchM-ChlM: magnesium protoporphyrin O-methyltransferase
    2.4e-05   22.1   0.0    3.9e-05   21.4   0.0    1.2  1  TIGR02072 BioC: biotin biosynthesis protein BioC
    2.9e-05   21.5   0.0    4.2e-05   21.0   0.0    1.2  1  TIGR02752 MenG_heptapren: 2-heptaprenyl-1,4-naphthoquinone methyltransferase
    7.4e-05   20.2   0.0    0.00012   19.6   0.0    1.3  1  TIGR02081 metW: methionine biosynthesis protein MetW
     0.0024   14.8   0.0     0.0097   12.9   0.0    1.8  1  TIGR00452 TIGR00452: putative methyltransferase


Domain annotation for each model (and alignments):
>> TIGR01934  MenG_MenH_UbiE: ubiquinone/menaquinone biosynthesis methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.5   0.0   4.7e-12   2.7e-09      11     140 ..      35     160 ..      30     180 .. 0.77

  Alignments for each domain:
  == domain 1    score: 34.5 bits;  conditional E-value: 4.7e-12
   TIGR01934  11 kYDllNdllSlGldrlWkkkavkkieeekeekvlDvatGtGdlaielakkaeakvtgvDlseemLevakkkakekeeanvefieadaeeLpfednsfdavtiafGlRNv...tdiekaLkelaRVlkpggrlv 140
                  YD + +       ++W + +    +  +++ v Dv +G G+la ++  + +   +g+D+s+e++++++  +      ++e ++ada  Lp+++  fdavt+   l  +   +++++ + e+ RVl+pgg+ +
  MMETSP1137-20121227|3172_1  35 VYDSVAHEWHGTRYKAWPRVVEFVNTLPRHSLVADVGCGNGKLAPAFRSNGH-FGIGSDFSTELVRISAVDM------QMEAQVADALMLPYRSDAFDAVTCIAVLHHIttqVRRQRLIAEALRVLRPGGQAL 160
                 5666666665566667765444334444788899**********99988775.469**********998775......47789*****************976555554111678999************976 PP

>> TIGR01983  UbiG: 3-demethylubiquinone-9 3-O-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.0   0.0   2.2e-10   1.3e-07      51     151 ..      65     161 ..      13     170 .. 0.80

  Alignments for each domain:
  == domain 1    score: 29.0 bits;  conditional E-value: 2.2e-10
   TIGR01983  51 lkvlDvGcGgGllseslarlgaevtgiDlseelievAklhakkdplkkieyelksveelaeeekesfDvvlamEvlEHvadl...eeilkecaellkpggilfl 151
                   v DvGcG G l+ ++  +g   +g D s+el+++  +  +++       +++++  l  + +++fD+v+++ vl H+++    ++++ e++++l+pgg+ ++
  MMETSP1137-20121227|3172_1  65 SLVADVGCGNGKLAPAFRSNGHFGIGSDFSTELVRISAVDMQME------AQVADALMLPYR-SDAFDAVTCIAVLHHITTQvrrQRLIAEALRVLRPGGQALF 161
                 4578******************************9987665544......345666666666.577*************86433389************99776 PP

>> TIGR02021  BchM-ChlM: magnesium protoporphyrin O-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.9   0.0   3.6e-08   2.1e-05      54     134 ..      63     139 ..      43     152 .. 0.82

  Alignments for each domain:
  == domain 1    score: 21.9 bits;  conditional E-value: 3.6e-08
   TIGR02021  54 kGkkvlDAGCGtGllsielAkrGaivkavDiseklvelarkraekedeaenveFevndlesle.gkfDavvalDvlihYpae 134
                 + + v D GCG G l+  +  +G    ++D s +lv ++  +++ e +      +   ++    + fDav ++ vl h +++
  MMETSP1137-20121227|3172_1  63 RHSLVADVGCGNGKLAPAFRSNGHFGIGSDFSTELVRISAVDMQMEAQ-----VADALMLPYRsDAFDAVTCIAVLHHITTQ 139
                 556799********************************9999988885.....233334444449**********9998765 PP

>> TIGR02072  BioC: biotin biosynthesis protein BioC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   0.0   6.7e-08   3.9e-05      35     132 ..      64     161 ..      51     169 .. 0.87

  Alignments for each domain:
  == domain 1    score: 21.4 bits;  conditional E-value: 6.7e-08
   TIGR02072  35 pakvLdiGcGtGiltrallkrfpqaelialDiseemleqakkklsnvqficgdieklplekksfDlivSnlalQWlddl...sevlaelarvlkpgGllaf 132
                 ++ v d+GcG G l  a ++       i  D+s e  ++   +  +++ + +d+  lp + + fD +++ ++l+ +      ++++ae+ rvl+pgG ++f
  MMETSP1137-20121227|3172_1  64 HSLVADVGCGNGKLAPAFRSNGHFG--IGSDFSTELVRISAVDM-QMEAQVADALMLPYRSDAFDAVTCIAVLHHITTQvrrQRLIAEALRVLRPGGQALF 161
                 35799*******************9..**********9999777.699***************************9864233789************9998 PP

>> TIGR02752  MenG_heptapren: 2-heptaprenyl-1,4-naphthoquinone methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.0   0.0   7.2e-08   4.2e-05      18     148 ..      36     160 ..      17     179 .. 0.76

  Alignments for each domain:
  == domain 1    score: 21.0 bits;  conditional E-value: 7.2e-08
   TIGR02752  18 ydrmnsvisfkrhkkwrkdtmkrmnvqkgkkaldvccgtadwaialaeavgkegev.kgldfsenmlsvgkekvkdaklenvelvhgnamelpyednsfdyvtigfglrnvpdyl...qvlkemarvvkpggkvv 148
                 yd++       r+k+w + +     + + + + dv cg +     la a   +g+  +g dfs ++++++   +      ++e    +a+ lpy  ++fd vt    l  +   +   +++ e  rv++pgg+  
  MMETSP1137-20121227|3172_1  36 YDSVAHEWHGTRYKAWPRVVEFVNTLPRHSLVADVGCGNGK----LAPAFRSNGHFgIGSDFSTELVRISAVDM------QMEAQVADALMLPYRSDAFDAVTCIAVLHHITTQVrrqRLIAEALRVLRPGGQAL 160
                 55555555566677776655555556666778899999997....5556666676548*********9986544......34555679***************99999999887622257899*********965 PP

>> TIGR02081  metW: methionine biosynthesis protein MetW
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.0     2e-07   0.00012       8     102 ..      58     153 ..      52     160 .. 0.78

  Alignments for each domain:
  == domain 1    score: 19.6 bits;  conditional E-value: 2e-07
   TIGR02081   8 lelipagsrvLDlGcGdGeLLallrdekqvegaGleideenvlacvarGveviqqdldegLeafedksfDvvvlsqtlqavr...nteeiLdellRvg 102
                 ++ +p +s v D+GcG+G+L  ++r +    g G + ++e v    a  +++  q +d  +  ++++ fD v   + l  +    + ++++ e lRv 
  MMETSP1137-20121227|3172_1  58 VNTLPRHSLVADVGCGNGKLAPAFRSN-GHFGIGSDFSTELVRI-SAVDMQMEAQVADALMLPYRSDAFDAVTCIAVLHHITtqvRRQRLIAEALRVL 153
                 678999******************765.5579999999987754.445677778888888889*******9988888776651114567889999985 PP

>> TIGR00452  TIGR00452: putative methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.9   0.0   1.7e-05    0.0097     100     204 ..      39     139 ..      29     154 .. 0.66

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 1.7e-05
   TIGR00452 100 idsewrsd.ik.wdrvlkhlspl.kgrtildvGcgsGyylfrmvgeGaklvvGid.ptelvlkqfeavrklldndkraillplGieqlqelkafdtvfslGvlyhrksp 204
                 +  ew+   +k w rv++ +  l +   ++dvGcg+G        +  +  +G d  telv+    av   ++ +  a  l l         afd+v ++ vl+h  + 
  MMETSP1137-20121227|3172_1  39 VAHEWHGTrYKaWPRVVEFVNTLpRHSLVADVGCGNGKLA-PAFRSNGHFGIGSDfSTELVR--ISAVDMQMEAQ-VADALMLP----YRSDAFDAVTCIAVLHHITTQ 139
                 566887542545********9994456799*******754.555556678888883355554..45555444432.23333222....234599999999999996655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (277 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        70  (0.0170648); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.26u 0.14s 00:00:00.40 Elapsed: 00:00:00.46
# Mc/sec: 794.80
//
Query:       MMETSP1137-20121227|3173_1  [L=329]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (329 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        83  (0.020234); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.16s 00:00:00.42 Elapsed: 00:00:00.84
# Mc/sec: 516.96
//
Query:       MMETSP1137-20121227|3174_1  [L=505]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.011   11.9   3.3      0.015   11.4   2.3    1.1  1  TIGR00232 tktlase_bact: transketolase


Domain annotation for each model (and alignments):
>> TIGR00232  tktlase_bact: transketolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   2.3   3.8e-06     0.015     251     388 ..     171     305 ..     154     320 .. 0.75

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 3.8e-06
   TIGR00232 251 egteevhgaplkeeevkllkkklglnyeeFevpqevydffkkevkergekaeeewneklakykkkypelakeferrlsgelpadyekklkefkakkka..latRkaskevlnalakelpellggsaDlarsnltklkesk 388
                 e ++e h a lk+e     +kkl+l+ e+ +v+++v  + +++ k ++e+  ++w++  ++ + +   +ak  + ++s  l +  + +++  + + ++  +a+R++ + +l +++     l g +aDl +    +  ++k
  MMETSP1137-20121227|3174_1 171 ETRAEEHKAQLKKE----QQKKLQLDDETLMVARDVR-VLRQRRKLSEEESAAAWKKVQESIQGRQQLEAKVENMKMSQRLRSMDKPHVEVLRGNLQEqvAAARRQRDALLAQYNIRQARLAGVQADLDPEEELRSVSDK 305
                 44555666666655....5678999999********9.78888899999999****99999998865455555567888888887788887776555445999*************************998777655555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (505 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       320  (0.0780107); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.16s 00:00:00.55 Elapsed: 00:00:00.59
# Mc/sec: 1129.74
//
Query:       MMETSP1137-20121227|3175_1  [L=573]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (573 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        86  (0.0209654); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.16s 00:00:00.53 Elapsed: 00:00:01.26
# Mc/sec: 600.24
//
Query:       MMETSP1137-20121227|3176_1  [L=68]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (68 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        32  (0.00780107); expected 82.0 (0.02)
Passed bias filter:                       31  (0.00755729); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.13s 00:00:00.25 Elapsed: 00:00:00.43
# Mc/sec: 208.73
//
Query:       MMETSP1137-20121227|3177_1  [L=224]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (224 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        47  (0.0114578); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.11s 00:00:00.30 Elapsed: 00:00:00.50
# Mc/sec: 591.31
//
Query:       MMETSP1137-20121227|3178_1  [L=136]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (136 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        33  (0.00804486); expected 82.0 (0.02)
Passed bias filter:                       32  (0.00780107); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.14s 00:00:00.30 Elapsed: 00:00:00.33
# Mc/sec: 543.96
//
Query:       MMETSP1137-20121227|3179_1  [L=565]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (565 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        45  (0.0109703); expected 82.0 (0.02)
Passed bias filter:                       41  (0.00999512); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.16s 00:00:00.51 Elapsed: 00:00:01.35
# Mc/sec: 552.40
//
Query:       MMETSP1137-20121227|3180_1  [L=462]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (462 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       156  (0.0380302); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.13s 00:00:00.44 Elapsed: 00:00:00.45
# Mc/sec: 1355.09
//
Query:       MMETSP1137-20121227|3182_1  [L=95]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (95 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        55  (0.0134081); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.36
# Mc/sec: 348.30
//
Query:       MMETSP1137-20121227|3183_1  [L=178]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (178 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        91  (0.0221843); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.16s 00:00:00.35 Elapsed: 00:00:00.66
# Mc/sec: 355.97
//
Query:       MMETSP1137-20121227|3184_1  [L=210]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (210 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       173  (0.0421745); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.16s 00:00:00.36 Elapsed: 00:00:01.18
# Mc/sec: 234.90
//
Query:       MMETSP1137-20121227|3185_1  [L=419]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.015   12.2   0.5      0.062   10.2   0.0    1.9  2  TIGR00155 pqiA_fam: integral membrane protein, PqiA family


Domain annotation for each model (and alignments):
>> TIGR00155  pqiA_fam: integral membrane protein, PqiA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.1     0.023        96     140     184 ..      50      95 ..      32     100 .. 0.65
   2 ?   10.2   0.0   1.5e-05     0.062      36      99 ..     122     185 ..     107     202 .. 0.88

  Alignments for each domain:
  == domain 1    score: -0.3 bits;  conditional E-value: 0.023
   TIGR00155 140 vlerlkeWvmld.iylvgvgvaivkvreyasievgvsllpfvllvv 184
                 +   l  W++l  ++ + + +a + vr+y++ +v+ + l+ +++++
  MMETSP1137-20121227|3185_1  50 LRRALICWALLSfVFAMLLTMAQLAVRQYSQTHVSRGNLSTLFYAL 95 
                 4455667777763455556677778888888877777777666665 PP

  == domain 2    score: 10.2 bits;  conditional E-value: 1.5e-05
   TIGR00155  36 CPrCqaklasgtdaslqrlaaialaillllllsllfPllslnllGikidasllegiwklakegy 99 
                  P   a+l  +    l  l+ +a +  lll+l+   P++   llG++i a +   + k+ ++g+
  MMETSP1137-20121227|3185_1 122 APPSYALLDMAIAVVLPLLTSYASSHKLLLPLTAYAPMVLALLLGLRIVAPISSSVEKMCNQGF 185
                 5666677888888888899****************************************99986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (419 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       162  (0.0394929); expected 82.0 (0.02)
Passed bias filter:                      103  (0.0251097); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.18s 00:00:00.51 Elapsed: 00:00:00.60
# Mc/sec: 921.72
//
Query:       MMETSP1137-20121227|3186_1  [L=262]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (262 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        56  (0.0136519); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.16s 00:00:00.37 Elapsed: 00:00:00.47
# Mc/sec: 735.77
//
Query:       MMETSP1137-20121227|3188_1  [L=110]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (110 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        63  (0.0153584); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.15s 00:00:00.30 Elapsed: 00:00:00.37
# Mc/sec: 392.40
//
Query:       MMETSP1137-20121227|3189_1  [L=88]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0032   14.8   0.0     0.0047   14.2   0.0    1.2  1  TIGR03695 menH_SHCHC: 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase


Domain annotation for each model (and alignments):
>> TIGR03695  menH_SHCHC: 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.0   1.1e-06    0.0047     215     251 ..      15      51 ..      13      52 .. 0.92

  Alignments for each domain:
  == domain 1    score: 14.2 bits;  conditional E-value: 1.1e-06
   TIGR03695 215 emqkllpalklevieeaGHnihlenpeafakileefl 251
                 +m+++lp  +++++e+aGH ih    ++f+++l+ +l
  MMETSP1137-20121227|3189_1  15 DMRRRLPYTRVRLFEDAGHSIHNSARAEFMHALRGVL 51 
                 688999*************************999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (88 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        87  (0.0212092); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.13u 0.14s 00:00:00.27 Elapsed: 00:00:00.39
# Mc/sec: 297.82
//
Query:       MMETSP1137-20121227|3190_1  [L=274]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (274 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       107  (0.0260848); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.13s 00:00:00.36 Elapsed: 00:00:00.81
# Mc/sec: 446.48
//
Query:       MMETSP1137-20121227|3191_1  [L=607]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (607 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        87  (0.0212092); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.13s 00:00:00.53 Elapsed: 00:00:00.44
# Mc/sec: 1820.85
//
Query:       MMETSP1137-20121227|3192_1  [L=242]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.3e-19   67.7   0.0    3.4e-19   67.1   0.0    1.1  1  TIGR02415 23BDH: acetoin reductases
    3.8e-19   66.8   0.1    5.2e-19   66.3   0.1    1.2  1  TIGR01963 PHB_DH: 3-hydroxybutyrate dehydrogenase
    9.3e-15   52.8   0.4    2.4e-14   51.5   0.3    1.6  1  TIGR01830 3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase
    2.1e-14   51.3   0.8    2.7e-14   51.0   0.5    1.1  1  TIGR03206 benzo_BadH: 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase
    1.6e-12   44.5   0.2    1.9e-12   44.2   0.1    1.0  1  TIGR02632 RhaD_aldol-ADH: rhamnulose-1-phosphate aldolase/alcohol dehydrogenase
    1.3e-11   42.2   0.0    1.6e-11   42.0   0.0    1.2  1  TIGR03971 SDR_subfam_1: oxidoreductase, SDR family
    1.2e-09   36.0   0.0    2.3e-09   35.1   0.0    1.3  1  TIGR01829 AcAcCoA_reduct: acetoacetyl-CoA reductase
      1e-07   29.3   0.2    1.5e-07   28.7   0.1    1.2  1  TIGR03325 BphB_TodD: cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase
      2e-07   28.5   0.0    5.6e-07   27.0   0.0    1.6  1  TIGR01500 sepiapter_red: sepiapterin reductase
    4.8e-07   27.4   0.1    8.4e-07   26.5   0.1    1.3  1  TIGR01832 kduD: 2-deoxy-D-gluconate 3-dehydrogenase
    4.8e-07   27.2   1.0    1.1e-06   26.1   0.7    1.4  1  TIGR01831 fabG_rel: putative 3-oxoacyl-(acyl-carrier-protein) reductase
  ------ inclusion threshold ------
      0.016   12.0   0.0      0.059   10.1   0.0    1.8  2  TIGR03604 docking_ocin: bacteriocin biosynthesis docking scaffold, SagD family


Domain annotation for each model (and alignments):
>> TIGR02415  23BDH: acetoin reductases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.1   0.0   9.9e-22   3.4e-19       3     177 ..       6     185 ..       5     201 .. 0.85

  Alignments for each domain:
  == domain 1    score: 67.1 bits;  conditional E-value: 9.9e-22
   TIGR02415   3 alvtGaa..qGiGkaiaerLakdGfavavadlneetaketakelkekgt..kav.avkldvsdkseveeaveqaveklGeldvlvnnaGvalvtp..ileiteeeleklynvnvkgvlfGiqaaaekfkklkhkGkiinaasiagvegspelsaysstkfavrgltqtaakeLakkgitvna 177
                 a++ G +   G+G+aia+r+a+ G++v +   n e +k+++++++++ +  k v + ++dv+d++++++a+++  ++lGe  vlv n    +  p  ++++++e+l + ++    g l  +qa + ++k    kG i+   + a+ ++ + ls ++s+k ++r+l q+ ake+++ gi v  
  MMETSP1137-20121227|3192_1   6 AIIIGVSymPGLGHAIAKRFAEGGLSVGIIGRNAERLKAVQEDIEASTKdcKGVqFCTADVTDRASLQAAIKS-FAELGEPTVLVYNPSAPPFPPaeVADLDPERLVNDFKTGPVGFLTAVQAVMPAMKAA-GKGTILVTGATASLRAAKGLSSFASAKTSLRALSQSLAKEVSAGGIHVAH 185
                 5666654225********************************99876541144437789************75.679**********9888776533889***********************99998766.5899*99**************************************99964 PP

>> TIGR01963  PHB_DH: 3-hydroxybutyrate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.3   0.1   1.5e-21   5.2e-19      11     188 ..      15     197 ..       4     229 .. 0.83

  Alignments for each domain:
  == domain 1    score: 66.3 bits;  conditional E-value: 1.5e-21
   TIGR01963  11 sGiglaiakelaaaGakvvvndleeeaaeaaakeleeaggevlal...kadvtkeeeiadlieavaaefgsldiLvnnAGiqhvapie..efptekfekiiavnltsafhtiraalpimkkqgwGriiniasvhglvasafKsaYvaaKHglvGltKvlAlEvAetgita.naicPgyvrtpLv 188
                  G+g+aiak++a+ G +v + + ++e ++a+++++e+++ +++ +   +advt+ ++++  i+   ae+g+  +Lv n       p e  + ++e+  +  +    + +++++a++p mk++g G i+  +++ +l+a    s++ +aK +l  l+++lA+Ev + gi + ++i  g v+ p+ 
  MMETSP1137-20121227|3192_1  15 PGLGHAIAKRFAEGGLSVGIIGRNAERLKAVQEDIEASTKDCKGVqfcTADVTDRASLQAAIKSF-AELGEPTVLVYNPSAPPFPPAEvaDLDPERLVNDFKTGPVGFLTAVQAVMPAMKAAGKGTILVTGATASLRAAKGLSSFASAKTSLRALSQSLAKEVSAGGIHVaHVIVDGLVDMPIH 197
                 69******************************999998888765411279******999888765.789*********9888776655116667666666666666778899********************************************************8538899999999975 PP

>> TIGR01830  3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.5   0.3   6.9e-17   2.4e-14       8     183 ..      15     194 ..       6     215 .. 0.85

  Alignments for each domain:
  == domain 1    score: 51.5 bits;  conditional E-value: 6.9e-17
   TIGR01830   8 rgiGkaiakklakegakvviterskeekaeelaeelkeagvkaaav...kldvsdeeevkelveeveeelgeidilvnnAGi..trDklllrmkeedwdevikvnLkgvfnvtkavlkkmikkrsGriinissvvgllGnagqanYaasKaGligltkslakElasrnitvna.vaPGfiet 183
                  g+G+aiak++a+ g +v i  r ++e++++++e+++++ +++++v   ++dv+d+++++++++++ e lge  +lv n        + +  +  e+  +  k+   g  + ++av+ +m  + +G i+  ++ ++l   +g + +a++K+ l +l++slakE+++ +i+v   +  G+++ 
  MMETSP1137-20121227|3192_1  15 PGLGHAIAKRFAEGGLSVGIIGR-NAERLKAVQEDIEASTKDCKGVqfcTADVTDRASLQAAIKSFAE-LGEPTVLVYNPSAppFPPAEVADLDPERLVNDFKTGPVGFLTAVQAVMPAMKAAGKGTILVTGATASLRAAKGLSSFASAKTSLRALSQSLAKEVSAGGIHVAHvIVDGLVDM 194
                 59*******************66.7788999**999998777655411178************99876.8999999998655115678889999999999999******************************************************************9975156677765 PP

>> TIGR03206  benzo_BadH: 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.0   0.5     8e-17   2.7e-14       7     189 ..       7     196 ..       2     213 .. 0.82

  Alignments for each domain:
  == domain 1    score: 51.0 bits;  conditional E-value: 8e-17
   TIGR03206   7 ivtggg..ggiggaicrrfaeegakvavldlnaeaaekvaaairekggkaeav...avditdrasvdaavaaaeealgpvdvlvnnagwdvlkpflktekaewerliainlt...galymhhavlkgmverkagrivniasdaarvgssgeavyaackgglvafsktlarelarhgitvn.vvcpgptdtal 189
                 i+ g +   g+g ai +rfae g  v ++  nae  + v ++i ++  +++ v   ++d+tdras++aa+ +  e lg   vlv n     + p   ++  + erl+    t   g l    av++ m   ++g i+   + a+   + g + +a  k  l a+s++la+e +  gi v  v+  g  d ++
  MMETSP1137-20121227|3192_1   7 IIIGVSymPGLGHAIAKRFAEGGLSVGIIGRNAERLKAVQEDIEASTKDCKGVqfcTADVTDRASLQAAIKSFAE-LGEPTVLVYNPSAPPFPPAEVAD-LDPERLVNDFKTgpvGFLTAVQAVMPAMKAAGKGTILVTGATASLRAAKGLSSFASAKTSLRALSQSLAKEVSAGGIHVAhVIVDGLVDMPI 196
                 5555432269*********************************998887766522268************98765.88889*****9988887755444.45688887666511156888999****************9****99*******************************996266677776665 PP

>> TIGR02632  RhaD_aldol-ADH: rhamnulose-1-phosphate aldolase/alcohol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.2   0.1   5.5e-15   1.9e-12     422     600 ..      13     192 ..       1     199 [. 0.86

  Alignments for each domain:
  == domain 1    score: 44.2 bits;  conditional E-value: 5.5e-15
   TIGR02632 422 gasGiGrevarrlvdeGahvvladldaeaaeavaaelvdkfGadkava.lkldvtdeeavkaafaevalayGGvdivvnnaGiavskpleeteleeWdlnldilatG..yflvareaarllrkqglggnlvfiasknavvakknalaysaakaaeahlvrllaielaelgirvntvaPdavl 600
                    G+G+++a+r+++ G  v ++  +ae+++av++++     + k+v   ++dvtd+ +++aa++  a + G   ++v n      +p e   l+   l  d   tG   fl a +a+    k +  g ++ +++  ++ a k+ +++++ak++   l + la e +  gi v  v  d+++
  MMETSP1137-20121227|3192_1  13 YMPGLGHAIAKRFAEGGLSVGIIGRNAERLKAVQEDIEASTKDCKGVQfCTADVTDRASLQAAIKSFA-ELGEPTVLVYNPSAPPFPPAEVADLDPERLVNDFK-TGpvGFLTAVQAVMPAMKAAGKGTILVTGATASLRAAKGLSSFASAKTSLRALSQSLAKEVSAGGIHVAHVIVDGLV 192
                 347***********************************99998888874699***********99876.79999******988888888877777666666665.442359******9988888888899999*******************************************999877 PP

>> TIGR03971  SDR_subfam_1: oxidoreductase, SDR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.0   0.0   4.6e-14   1.6e-11      50     198 ..      46     190 ..       5     235 .. 0.79

  Alignments for each domain:
  == domain 1    score: 42.0 bits;  conditional E-value: 4.6e-14
   TIGR03971  50 redldetaklvealGrkvlarkadvrkleelravveegveefGrldvvvanaGvlsy..grafelseeqWdtvldvnlkGvWktvkavvPalierknGGsiiivssvaglkalpglahyaaakhGlvgltktlanelaeygirvnsihPts 198
                 +ed++  +k      + v   +adv + + l+a+++ + +e+G   v+v n     +  +++ +l++e+  +   +   G   +v+av+Pa+  ++  G+i++++++a+l+a +gl+ +a+ak  l +l ++la+e++  gi v  +   +
  MMETSP1137-20121227|3192_1  46 QEDIEASTKD----CKGVQFCTADVTDRASLQAAIK-SFAELGEPTVLVYNPSAPPFppAEVADLDPERLVNDFKTGPVGFLTAVQAVMPAMKAAG-KGTILVTGATASLRAAKGLSSFASAKTSLRALSQSLAKEVSAGGIHVAHVIVDG 190
                 4444444333....233556789********99996.6899*********97776652277899******9999******************9998.689*******************************************98664433 PP

>> TIGR01829  AcAcCoA_reduct: acetoacetyl-CoA reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.1   0.0   6.6e-12   2.3e-09       9     187 ..      14     196 ..       5     205 .. 0.85

  Alignments for each domain:
  == domain 1    score: 35.1 bits;  conditional E-value: 6.6e-12
   TIGR01829   9 lgGiGtaickrlakdGykvvanvapneerakewlqekevegfd...vavvkadvssfeeakaavakveaelGpvdvlvnnaGi..trdavfkkmtkeqWeevidtnlnsvfnvtrpviegmlergfGriinissvnGlkGqfGqanysaakaGliGftkalaqegakkgvtvn.viaPGyiatem 187
                 + G+G ai+kr+a+ G  v   +  n+er k+++++ e++ +d   v++++adv++  + +aa+++  aelG+  vlv n        a ++ ++ e+  +  +t   + ++  + v+ +m+  g G i+   +   l+   G + +++ak+ l  ++++la+e+++ g+ v  vi  G ++ ++
  MMETSP1137-20121227|3192_1  14 MPGLGHAIAKRFAEGGLSVGI-IGRNAERLKAVQEDIEASTKDckgVQFCTADVTDRASLQAAIKSF-AELGEPTVLVYNPSAppFPPAEVADLDPERLVNDFKTGPVGFLTAVQAVMPAMKAAGKGTILVTGATASLRAAKGLSSFASAKTSLRALSQSLAKEVSAGGIHVAhVIVDGLVDMPI 196
                 67**************99843.44488888888887777666533378999******9999999875.89********986551156889999******9*9********************************************************************996367888887766 PP

>> TIGR03325  BphB_TodD: cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.7   0.1   4.5e-10   1.5e-07      14     186 ..      14     190 ..       2     200 .. 0.75

  Alignments for each domain:
  == domain 1    score: 28.7 bits;  conditional E-value: 4.5e-10
   TIGR03325  14 asglgralvdrfvaegarvavldksaagleeleaahgdkvvgveg......dvrllddhkeavarcveafgkldtlipnagiwdys.talvdipddrideafdevfeinvkgyllavkaalpalva.srgsviftvsnagfypngggalytaakhavvglvkelayela.pyvrvngvapgg 186
                   glg a+ +rf   g  v+++ + a++l++++++  +     +g      dv   ++  +a+ +  +++g   +l+ n     +  +++ d+  +r+ + f    +    g+l av+a++pa+ a  +g+++ t + a + ++ g + +++ak ++  l + la e++   + v  v   g
  MMETSP1137-20121227|3192_1  14 MPGLGHAIAKRFAEGGLSVGIIGRNAERLKAVQEDIEASTKDCKGvqfctaDVTDRASL-QAAIKSFAELGEPTVLVYNPSAPPFPpAEVADLDPERLVNDF----KTGPVGFLTAVQAVMPAMKAaGKGTILVTGATASLRAAKGLSSFASAKTSLRALSQSLAKEVSaGGIHVAHVIVDG 190
                 46****************************99987665554444411011144443333.344556667777788999998888862456688888877665....67888************975269*************************************9851457776666555 PP

>> TIGR01500  sepiapter_red: sepiapterin reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.0   0.0   1.6e-09   5.6e-07       5     183 ..       8     177 ..       5     194 .. 0.81

  Alignments for each domain:
  == domain 1    score: 27.0 bits;  conditional E-value: 1.6e-09
   TIGR01500   5 vtGasr..GfGrelaqelakrlkaegsvlvLlaRndeaLkeskaeie.aevsalsvdlvsldleaakdvedllkaleesikkeeyerillinnaGtlgdvskrekelsDsknvqkyydsnvtslvvltsellkklkelqglektvvnlssLcaikpfkswalYCaskaaRdmffqvLaleek 183
                 + G s   G+G+++a+++a+     g  + +++Rn e Lk  +++ie ++++ + v+  ++d+   + ++  +k+  e++++     +l++n        +  ++   D + + +++++  + +++    ++ ++k   + + t+    + +++++ k+++ + ++k     + q La e +
  MMETSP1137-20121227|3192_1   8 IIGVSYmpGLGHAIAKRFAE----GGLSVGIIGRNAERLKAVQEDIEaSTKDCKGVQFCTADVTDRASLQAAIKSFAELGEPT----VLVYNPSAPPFPPAEVAD--LDPERLVNDFKTGPVGFLTAVQAVMPAMK--AAGKGTILVTGATASLRAAKGLSSFASAKTSLRALSQSLAKEVS 177
                 55555333788887777777....8999999****************55566689************************9985....667777777777777777..68999999999999999999999999999..44455666677789999999999999999999999999998876 PP

>> TIGR01832  kduD: 2-deoxy-D-gluconate 3-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.5   0.1   2.5e-09   8.4e-07       8     181 ..       6     186 ..       2     196 .. 0.74

  Alignments for each domain:
  == domain 1    score: 26.5 bits;  conditional E-value: 2.5e-09
   TIGR01832   8 alvtGan..tGlGqgiavglaeaGad..ivgvgiselsetqekvealGrk...flslkadladeeaakalvdeaveeagkidilvnnaGiirredavefsekdwddvln.vnlkavflls.qavakkllkqGrkgkiiniasllsfqGGirvpsytasksavaGltkllanewakkginvnai 181
                 a++ G +   GlG +ia  +ae G    i+g +   l+  qe +ea  +    ++  +ad++d ++ +a +++++e  g+  +lv n          e+++ d + ++n      v +l+  ++   ++k   kg i+   +  s++    ++s++++k ++  l+++la+e ++ gi+v  +
  MMETSP1137-20121227|3192_1   6 AIIIGVSymPGLGHAIAKRFAEGGLSvgIIGRNAERLKAVQEDIEASTKDckgVQFCTADVTDRASLQAAIKSFAEL-GEPTVLVYNPSAPPF-PPAEVADLDPERLVNdFKTGPVGFLTaVQAVMPAMKAAGKGTILVTGATASLRAAKGLSSFASAKTSLRALSQSLAKEVSAGGIHVAHV 186
                 5566654226*************976226888877777778877776554111677899*********999887765.677899999776544.45577888887766525666675555133444556666699999999999***9999****************************9753 PP

>> TIGR01831  fabG_rel: putative 3-oxoacyl-(acyl-carrier-protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.1   0.7   3.1e-09   1.1e-06       8     185 ..      15     195 ..       7     206 .. 0.76

  Alignments for each domain:
  == domain 1    score: 26.1 bits;  conditional E-value: 3.1e-09
   TIGR01831   8 rgigraialklaadgfeiavhyrsdradaeesvaairaqggnarllkf...dvadrvavrevleadiaehgayygvvlnagiardaafpalseedwd.....avietnldgfynvihplvmpmirarkggriitlasvsgvmgnrgqvnysaakagligatkalavelakrkitvn.ciapglidte 185
                  g+g+aia ++a  g  +++   +++   +++ ++i+a   +++ ++f   dv+dr + +++++   ae g    +v n        fp    +d d       ++t+  gf   ++  vmp ++a   g i+   + + +   +g   +++ak+ l   +++la e++   i v   i  gl+d  
  MMETSP1137-20121227|3192_1  15 PGLGHAIAKRFAEGGLSVGIIG-RNAERLKAVQEDIEASTKDCKGVQFctaDVTDRASLQAAIK-SFAELGEPTVLVYNPSA---PPFPPAEVADLDperlvNDFKTGPVGFLTAVQA-VMPAMKAAGKGTILVTGATASLRAAKGLSSFASAKTSLRALSQSLAKEVSAGGIHVAhVIVDGLVDMP 195
                 59*****************965.56677788888899988888888874447777777766664.46777777777777654...3455443333332111155789999*****996.78888888888888888888899*******************************99626789999965 PP

>> TIGR03604  docking_ocin: bacteriocin biosynthesis docking scaffold, SagD family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0      0.35   1.2e+02     202     273 ..       5      73 ..       2     112 .. 0.73
   2 ?   10.1   0.0   0.00017     0.059     319     360 ..     174     216 ..     162     226 .. 0.88

  Alignments for each domain:
  == domain 1    score: -0.8 bits;  conditional E-value: 0.35
   TIGR03604 202 pklvvGagadldpeeAlkkalaElaqllelladelredrekleniakdyrdvrdledhvllyadpkleerle 273
                 +++++G++  + + +A++k +aE   ++ ++ +++++ ++ +e+i+  ++   d +   +  ad + +  l+
  MMETSP1137-20121227|3192_1   5 CAIIIGVSYMPGLGHAIAKRFAEGGLSVGIIGRNAERLKAVQEDIEASTK---DCKGVQFCTADVTDRASLQ 73 
                 67778888888888899999999888888888866666666665555554...5555555555555555555 PP

  == domain 2    score: 10.1 bits;  conditional E-value: 0.00017
   TIGR03604 319 pdirkaGlevvrviiPgllpltfghapfl.gleRlytvprelg 360
                 +++++ G++v++vi+ gl+ + + +a +  g  Rl++  + ++
  MMETSP1137-20121227|3192_1 174 KEVSAGGIHVAHVIVDGLVDMPIHSANPDiGKGRLLDTAAVAE 216
                 578899***************999998888*****99887665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (242 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       179  (0.0436373); expected 82.0 (0.02)
Passed bias filter:                      151  (0.0368113); expected 82.0 (0.02)
Passed Vit filter:                        19  (0.00463189); expected 4.1 (0.001)
Passed Fwd filter:                        12  (0.0029254); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.33u 0.17s 00:00:00.50 Elapsed: 00:00:00.82
# Mc/sec: 389.53
//
Query:       MMETSP1137-20121227|3193_1  [L=443]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        1.3    4.4  36.3        1.9    3.8  25.2    1.2  1  TIGR00927 2A1904: K+-dependent Na+/Ca+ exchanger
        3.6    3.6  12.0        4.7    3.2   8.3    1.1  1  TIGR00934 2a38euk: potassium uptake protein, Trk family


Domain annotation for each model (and alignments):
>> TIGR00927  2A1904: K+-dependent Na+/Ca+ exchanger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8  25.2   0.00091       1.9     747     890 ..      30     165 ..       4     204 .. 0.37

  Alignments for each domain:
  == domain 1    score: 3.8 bits;  conditional E-value: 0.00091
   TIGR00927 747 dvaeaeakg.ertgeeaeaeteaegekdeesggeaeqegeseekaeeeseGeieaerkgedegegeieakeaevkGeeeeeeveaeeeteaeGdedegeieaeeeGeekededegeieakeevevegdedeteieaeeeaevked 890
                 ++aeaeak+ e   +ea a  +a++e +e ++ +a+ e e+  kae+e   + +ae +   + ++++ea   + k +  +   +a+  +eae    + e+eae+  + k d  e+  +ak eveve++++  + +a+++ ++++d
  MMETSP1137-20121227|3193_1  30 EAAEAEAKAaEAAAQEAAA--KAKAEAEEAAKAKAKAEAEAAAKAEAEAAAKAKAEAEAAAKAKADAEAAA-KAKAD-AAAAAKAK--AEAEA-AAKAEAEAEAAAKAKSDA-EAASQAKAEVEVETERKA-KTDAKKKKKGQKD 165
                 1222222220111122221..22222222222222222222223333222222222222222222222221.11222.11111111..11121.112233333333333332.333344444444444321.1122222222221 PP

>> TIGR00934  2a38euk: potassium uptake protein, Trk family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   8.3    0.0023       4.7     269     484 ..      31     244 ..       3     248 .. 0.44

  Alignments for each domain:
  == domain 1    score: 3.2 bits;  conditional E-value: 0.0023
   TIGR00934 269 kheatakirdk.iseanslaaesdeessesrriqekikr.rlstssieknsqqnltrlaktksfddskavrlersktidraeasdleeldrakdfqkmveknvkaakrkk.knfkkreanlklfeksryakksdrneedngnkkdasksneseevsldseenayptyndeeedsrhalsktesknYLswqPti..gRnsnFlgLtkeqkdELGGveyRalk 484
                   ea+ak  +   +ea + a+ +     e+++ + k +  ++++++ e   + + +  a  k+  d +a+   ++     a+a+ + e + ++  +   e+  ka++  +  +  k e + ++ +k++ + k +++ ++++ +k+++ s  s      +e +a+p+ +   e+  +a   t+s +  s qP++  g  +   gL k  + +L G+e ++lk
  MMETSP1137-20121227|3193_1  31 AAEAEAKAAEAaAQEAAAKAKAEA---EEAAKAKAKAEAeAAAKAEAEAAAKAKAEAEAAAKAKADAEAAAKAKADAAAAAKAKAEAEAAAKA--EAEAEAAAKAKSDAEaASQAKAEVEVETERKAKTDAKKKKKGQKDAAAKEQPPSDASPAPAPAAEPKAQPAEAAPSEQNGTAPPPTASGSTASAQPKLvsGGRARLKGLAK--RADLNGKEVKVLK 244
                 222222222221111111111111...222222222222022233333333333344444444444333333333333333333333333333..233333333333222022333444555555555555555555555556666777777666666666777777777776666666666666667788764455566777776..7777777777777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (443 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       605  (0.147489); expected 82.0 (0.02)
Passed bias filter:                      139  (0.0338859); expected 82.0 (0.02)
Passed Vit filter:                        58  (0.0141394); expected 4.1 (0.001)
Passed Fwd filter:                        19  (0.00463189); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.94u 0.20s 00:00:01.13 Elapsed: 00:00:01.03
# Mc/sec: 567.68
//
Query:       MMETSP1137-20121227|3194_1  [L=295]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.89    6.4   8.4        1.5    5.7   5.8    1.3  1  TIGR01349 PDHac_trf_mito: pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase


Domain annotation for each model (and alignments):
>> TIGR01349  PDHac_trf_mito: pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   5.8   0.00036       1.5     104     157 ..     206     282 ..     161     289 .. 0.66

  Alignments for each domain:
  == domain 1    score: 5.7 bits;  conditional E-value: 0.00036
   TIGR01349 104 e.......................qsaeesaesakseasaekakessseaeaskkeskdrifasPlAkklAkekgid 157
                 e                        s+++  +s k +a+  ++++  ++ae++ k +  ++fa+PlA  +A+  + d
  MMETSP1137-20121227|3194_1 206 EmlettrqavsasvastiaaargaASSNSDGDSDKDKATSGEKRAAEAPAEEAPKPKAAKLFADPLAMLEAEGSDSD 282
                 03333333333333333333333223333333688888888888888888888998888*********999887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (295 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       216  (0.0526572); expected 82.0 (0.02)
Passed bias filter:                      127  (0.0309605); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.26u 0.16s 00:00:00.42 Elapsed: 00:00:00.46
# Mc/sec: 846.45
//
Query:       MMETSP1137-20121227|3196_1  [L=276]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (276 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       119  (0.0290102); expected 82.0 (0.02)
Passed bias filter:                       99  (0.0241346); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.14s 00:00:00.36 Elapsed: 00:00:00.37
# Mc/sec: 984.57
//
Query:       MMETSP1137-20121227|3198_1  [L=404]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (404 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        85  (0.0207216); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.15s 00:00:00.43 Elapsed: 00:00:00.86
# Mc/sec: 620.04
//
Query:       MMETSP1137-20121227|3199_1  [L=240]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.2e-23   80.0   0.0    5.3e-23   79.7   0.0    1.0  1  TIGR01347 sucB: dihydrolipoyllysine-residue succinyltransferase, E2 component of oxoglutarate dehydrogenase (succinyl-transferring) complex
    8.5e-18   62.3   4.8    8.5e-18   62.3   3.4    2.0  2  TIGR02927 SucB_Actino: 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase
      9e-14   48.7   9.3    1.9e-13   47.7   6.4    1.5  1  TIGR01348 PDHac_trf_long: dihydrolipoyllysine-residue acetyltransferase
    1.6e-11   41.8   2.5    2.4e-11   41.3   1.7    1.3  1  TIGR01349 PDHac_trf_mito: pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase
    4.7e-05   19.8   0.1    8.6e-05   19.0   0.0    1.4  2  TIGR01108 oadA: oxaloacetate decarboxylase alpha subunit
    7.6e-05   18.4   0.0    9.6e-05   18.0   0.0    1.1  1  TIGR02712 urea_carbox: urea carboxylase
    0.00095   14.5   0.0     0.0012   14.2   0.0    1.0  1  TIGR01235 pyruv_carbox: pyruvate carboxylase
     0.0012   15.6   0.1      0.051   10.3   0.0    2.0  2  TIGR03794 NHLM_micro_HlyD: NHLM bacteriocin system secretion protein
     0.0029   14.6   0.0     0.0039   14.2   0.0    1.2  1  TIGR00999 8a0102: membrane fusion protein cluster 2 protein
  ------ inclusion threshold ------
      0.014   12.2   0.1      0.099    9.4   0.1    1.7  2  TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit
       0.11   10.8   0.0       0.11   10.8   0.0    2.5  2  TIGR00531 BCCP: acetyl-CoA carboxylase, biotin carboxyl carrier protein


Domain annotation for each model (and alignments):
>> TIGR01347  sucB: dihydrolipoyllysine-residue succinyltransferase, E2 component of oxoglutarate dehydrogenase (succinyl-transferring) complex
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.7   0.0   1.4e-25   5.3e-23       5     158 ..      33     187 ..      30     207 .. 0.76

  Alignments for each domain:
  == domain 1    score: 79.7 bits;  conditional E-value: 1.4e-25
   TIGR01347   5 vPelaesvteatvaewekkvGdavkkdeliveletDkvslevaseadGvleellekegdtvesgevlaelee.ssaaaeaasekskeekeekaaakaekakeaaekkkalspaarklakeegidleavektkktgrvtkedivkkeekkasaake 158
                 vP++++s++e+t+ e++k++Gd +  +e+i+ +etDkv++ev s+a+G++++l ++egd ve+g+ l e++  + + + ++s +s +   +++a+++++a+e++++ +a+spa++ +  + + +++ ++  ++ ++ ++++ ++++ + asa ++
  MMETSP1137-20121227|3199_1  33 VPSMGDSISEGTILEFHKRPGDYIGMEEVIASVETDKVTVEVRSPAAGTITQLFAAEGDNVEVGTDLLEIDVgAGNPGVEKSSDSGSDVPDTPADSSAPAAEDTSSGHAASPAPSSSRVHLSGKPSLIQFRHPLDAEQQHSSASTSLASASAPSP 187
                 9*********************************************************************9833344556666667777777888888888888888899999888766666677777776666665554444444443333333 PP

>> TIGR02927  SucB_Actino: 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.3   3.4   2.3e-20   8.5e-18     131     254 ..      33     149 ..      26     158 .. 0.70
   2 ?   -5.2   5.0       6.2   2.3e+03      84     103 ..     180     199 ..     164     217 .. 0.49

  Alignments for each domain:
  == domain 1    score: 62.3 bits;  conditional E-value: 2.3e-20
   TIGR02927 131 mpelGesvteGtvtrwlkavGdtvevdepllevstdkvdteipspvaGtlleilaeeddtvevGavlakiGddagaedepkeeekpekseakseekpeaaepkaekkeepkpepkaeekapaak 254
                 +p +G+s++eGt+ ++ k  Gd + ++e +  v tdkv  e+ sp+aGt+ ++ a e d vevG+ l +i    ga      ++  eks  +  + p+++++ +++  e+    +a+++ap+++
  MMETSP1137-20121227|3199_1  33 VPSMGDSISEGTILEFHKRPGDYIGMEEVIASVETDKVTVEVRSPAAGTITQLFAAEGDNVEVGTDLLEIDV--GA-----GNPGVEKSSDSGSDVPDTPADSSAPAAEDTSSGHAASPAPSSS 149
                 678888888888888888888888888888888888888888888888888888888888888888888863..22.....2233345555556667777777777777777777776666554 PP

  == domain 2    score: -5.2 bits;  conditional E-value: 6.2
   TIGR02927  84 sedaeapaepeeepaeeppk 103
                 +  +++++ p++++a+ ppk
  MMETSP1137-20121227|3199_1 180 ASASAPSPSPAPAAAPTPPK 199
                 11222233333333333333 PP

>> TIGR01348  PDHac_trf_long: dihydrolipoyllysine-residue acetyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.7   6.4   5.1e-16   1.9e-13       4     150 ..      32     194 ..      29     212 .. 0.64

  Alignments for each domain:
  == domain 1    score: 47.7 bits;  conditional E-value: 5.1e-16
   TIGR01348   4 kvPdiGd.ieevevievlvkvGdkveaeqslitlesdkasmevPsskaGivkeikvkvGdtlkeGavilllevadgaad...daeekaeaa.saaagaadaakd.................veaeqalisveadkaaqevqdafketvkageagaaadaakkeaaPaea 150
                  vP +Gd i+e++++e   ++Gd +  e  +  +e+dk ++ev s++aG++ ++ +  Gd++++G+ +l+++v++g+     ++++  +++ ++a ++a aa+d                 +  +++li    +  a +++++      a+++ a+a+a + + aPa+a
  MMETSP1137-20121227|3199_1  32 PVPSMGDsISEGTILEFHKRPGDYIGMEEVIASVETDKVTVEVRSPAAGTITQLFAAEGDNVEVGTDLLEIDVGAGNPGvekSSDSGSDVPdTPADSSAPAAEDtssghaaspapsssrvhLSGKPSLIQFRHPLDAEQQHSS------ASTSLASASAPSPSPAPAAA 194
                 59************************************************************************998654322333333331233333334444444444444433333333333333333333322222222......33333333333333333333 PP

>> TIGR01349  PDHac_trf_mito: pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.3   1.7   6.4e-14   2.4e-11       3     105 ..      32     166 ..      30     208 .. 0.63

  Alignments for each domain:
  == domain 1    score: 41.3 bits;  conditional E-value: 6.4e-14
   TIGR01349   3 kmPaLsPtmeeGnlakwkkkeGDkvkeGdviaeietDkAtldvesqeegylakilvpegtkdvpvnk.liavlveeke..dvedavknyklessas.apkpkekae.............................q 105
                  +P++  ++ eG++ +++k+ GD +   +via +etDk t++v s   g++ ++  +eg + v+v++ l+ + v  ++   +++  +  ++ ++ + ++ p+++                                
  MMETSP1137-20121227|3199_1  32 PVPSMGDSISEGTILEFHKRPGDYIGMEEVIASVETDKVTVEVRSPAAGTITQLFAAEGDN-VEVGTdLLEIDVGAGNpgVEKSSDSGSDVPDTPAdSSAPAAEDTssghaaspapsssrvhlsgkpsliqfrhpL 166
                 5799999************************************************999986.***98334444444330033333333333332221222222222223333444444444444444444444440 PP

>> TIGR01108  oadA: oxaloacetate decarboxylase alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.0   2.3e-07   8.6e-05     525     580 ..      42      97 ..      26      99 .. 0.92
   2 ?   -3.4   0.0       1.3     5e+02     472     510 ..     146     184 ..     131     200 .. 0.55

  Alignments for each domain:
  == domain 1    score: 19.0 bits;  conditional E-value: 2.3e-07
   TIGR01108 525 aGsivkvkvseGdevkeGevllvleamkmeteikaaaaGiveeilvkkGdkvavge 580
                  G+i++ + + Gd +   ev+  +e+ k+  e++++aaG++++++ ++Gd+v vg 
  MMETSP1137-20121227|3199_1  42 EGTILEFHKRPGDYIGMEEVIASVETDKVTVEVRSPAAGTITQLFAAEGDNVEVGT 97 
                 599*************************************************9986 PP

  == domain 2    score: -3.4 bits;  conditional E-value: 1.3
   TIGR01108 472 savytvevegkaeevkvseskevskleasaaaaksagtv 510
                  ++  v+++gk   ++  +  + +++++sa+++  +++ 
  MMETSP1137-20121227|3199_1 146 PSSSRVHLSGKPSLIQFRHPLDAEQQHSSASTSLASASA 184
                 456667777777777777766555554444333322222 PP

>> TIGR02712  urea_carbox: urea carboxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.0   2.6e-07   9.6e-05    1140    1200 ..      42     102 ..      34     103 .. 0.90

  Alignments for each domain:
  == domain 1    score: 18.0 bits;  conditional E-value: 2.6e-07
   TIGR02712 1140 agrlWkvlvevgdeveagdklviveamkmelavsapvaGkvkkilvkeGdaveaGdalvvl 1200
                  +g++ ++    gd +  ++++  ve+ k+ ++v++p+aG+++++ ++eGd+ve G+ l+ +
  MMETSP1137-20121227|3199_1   42 EGTILEFHKRPGDYIGMEEVIASVETDKVTVEVRSPAAGTITQLFAAEGDNVEVGTDLLEI 102 
                  567777888899*******************************************998766 PP

>> TIGR01235  pyruv_carbox: pyruvate carboxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.0   3.2e-06    0.0012    1082    1139 ..      42     100 ..      29     103 .. 0.89

  Alignments for each domain:
  == domain 1    score: 14.2 bits;  conditional E-value: 3.2e-06
   TIGR01235 1082 pGvvievkvkaGskvekGdvlvvleamkmetvvqapkdGtvkevlvkdGekidae.dll 1139
                   G+++e   + G+ +   +v++++e+ k+ + v++p +Gt+ +++  +G++++   dll
  MMETSP1137-20121227|3199_1   42 EGTILEFHKRPGDYIGMEEVIASVETDKVTVEVRSPAAGTITQLFAAEGDNVEVGtDLL 100 
                  599*************************************************9651554 PP

>> TIGR03794  NHLM_micro_HlyD: NHLM bacteriocin system secretion protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.3   0.0    0.0088       3.3     258     291 ..      39      72 ..      28      74 .. 0.82
   2 !   10.3   0.0   0.00014     0.051     254     286 ..      72     104 ..      69     112 .. 0.90

  Alignments for each domain:
  == domain 1    score: 4.3 bits;  conditional E-value: 0.0088
   TIGR03794 258 sqhdGrvlevsltkGdlVeagaslaslevedats 291
                 s  +G++le +  +Gd +  +  +as+e +  t 
  MMETSP1137-20121227|3199_1  39 SISEGTILEFHKRPGDYIGMEEVIASVETDKVTV 72 
                 5678999999999999999999999999887665 PP

  == domain 2    score: 10.3 bits;  conditional E-value: 0.00014
   TIGR03794 254 teivsqhdGrvlevsltkGdlVeagaslaslev 286
                  e++s+  G+++++ +++Gd Ve g+ l+ ++v
  MMETSP1137-20121227|3199_1  72 VEVRSPAAGTITQLFAAEGDNVEVGTDLLEIDV 104
                 589**************************9987 PP

>> TIGR00999  8a0102: membrane fusion protein cluster 2 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.0     1e-05    0.0039      87     123 ..      66     102 ..      43     108 .. 0.86

  Alignments for each domain:
  == domain 1    score: 14.2 bits;  conditional E-value: 1e-05
   TIGR00999  87 akasasvevrsPfdGyiveksvtlGdyvapqaelfrv 123
                   ++  vevrsP +G i++    +Gd v+ ++ l+ +
  MMETSP1137-20121227|3199_1  66 ETDKVTVEVRSPAAGTITQLFAAEGDNVEVGTDLLEI 102
                 4456677**********************99998876 PP

>> TIGR01730  RND_mfp: efflux transporter, RND family, MFP subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.0     0.049        18      34      66 ..      42      74 ..      39      76 .. 0.88
   2 ?    9.4   0.1   0.00027     0.099     136     166 ..      73     103 ..      63     105 .. 0.61

  Alignments for each domain:
  == domain 1    score: 2.0 bits;  conditional E-value: 0.049
   TIGR01730 34 aGkvtkisvkeGqkVkkGqlLakldddelqlal 66
                +G + + + + G+++  ++++a +++d++ +++
  MMETSP1137-20121227|3199_1 42 EGTILEFHKRPGDYIGMEEVIASVETDKVTVEV 74
                7999999******************99998875 PP

  == domain 2    score: 9.4 bits;  conditional E-value: 0.00027
   TIGR01730 136 eirAPfdGvigkrlvevgayvsagtelvtiq 166
                 e+r+P  G+i++  + +g+ v++gt l++i+
  MMETSP1137-20121227|3199_1  73 EVRSPAAGTITQLFAAEGDNVEVGTDLLEID 103
                 5566666666666666666666666665553 PP

>> TIGR00531  BCCP: acetyl-CoA carboxylase, biotin carboxyl carrier protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00029      0.11     105     155 ..      53     103 ..      48     104 .. 0.94
   2 ?   -1.6   2.6         2   7.5e+02      44      70 ..     179     197 ..     161     212 .. 0.46

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 0.00029
   TIGR00531 105 GdkvkkgdvvciveAmklmneieaevagkvveilvedgqpveygepLivie 155
                 Gd +   +v++ ve  k+  e+    ag++ ++   +g+ ve g+ L+ i+
  MMETSP1137-20121227|3199_1  53 GDYIGMEEVIASVETDKVTVEVRSPAAGTITQLFAAEGDNVEVGTDLLEID 103
                 88889999***************************************9885 PP

  == domain 2    score: -1.6 bits;  conditional E-value: 2
   TIGR00531  44 lqqaaapvvaqvpavasaavpaaavaa 70 
                 l  a ap        ++  +paaa++ 
  MMETSP1137-20121227|3199_1 179 LASASAP--------SPSPAPAAAPTP 197
                 1222222........222222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (240 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        98  (0.0238908); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                        20  (0.00487567); expected 4.1 (0.001)
Passed Fwd filter:                        12  (0.0029254); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.37u 0.17s 00:00:00.54 Elapsed: 00:00:00.59
# Mc/sec: 536.90
//
Query:       MMETSP1137-20121227|3200_1  [L=274]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (274 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       102  (0.0248659); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.16s 00:00:00.39 Elapsed: 00:00:00.26
# Mc/sec: 1390.96
//
Query:       MMETSP1137-20121227|3201_1  [L=160]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0024   13.7   0.0     0.0024   13.7   0.0    1.0  1  TIGR00422 valS: valine--tRNA ligase


Domain annotation for each model (and alignments):
>> TIGR00422  valS: valine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   0.0   5.9e-07    0.0024     790     861 ..      68     139 ..       2     141 .. 0.74

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 5.9e-07
   TIGR00422 790 keeeeeavakvvpevevlipvkelenkakelaklqkelekekkekeriekkleneafvkkapkevvekekek 861
                 ++ + +a + +  ++ev++ +k++ +  ke+a+lqke+ +++ + e+ ++k++++++ ++ p++++++e+ k
  MMETSP1137-20121227|3201_1  68 MPPKGCAAEVLDGSLEVHVLLKGVVDFSKEVARLQKEATQITGRLEKLKAKMSKPDYAARCPQATQDEEQGK 139
                 45578888899999*************************************************999988765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (160 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       158  (0.0385178); expected 82.0 (0.02)
Passed bias filter:                      133  (0.0324232); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.19u 0.17s 00:00:00.36 Elapsed: 00:00:00.33
# Mc/sec: 639.95
//
Query:       MMETSP1137-20121227|3202_1  [L=378]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (378 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        33  (0.00804486); expected 82.0 (0.02)
Passed bias filter:                       33  (0.00804486); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.16s 00:00:00.41 Elapsed: 00:00:00.46
# Mc/sec: 1084.61
//
Query:       MMETSP1137-20121227|3203_1  [L=220]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (220 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       155  (0.0377864); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.16s 00:00:00.37 Elapsed: 00:00:00.34
# Mc/sec: 854.05
//
Query:       MMETSP1137-20121227|3204_1  [L=418]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.064   10.3   0.0       0.87    6.6   0.0    2.0  2  TIGR00057 TIGR00057: Sua5/YciO/YrdC/YwlC family protein


Domain annotation for each model (and alignments):
>> TIGR00057  TIGR00057: Sua5/YciO/YrdC/YwlC family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   0.0   0.00021      0.87      76     128 ..      60     111 ..      32     115 .. 0.77
   2 ?    1.4   0.0    0.0085        35     109     140 ..     191     223 ..     167     237 .. 0.72

  Alignments for each domain:
  == domain 1    score: 6.6 bits;  conditional E-value: 0.00021
   TIGR00057  76 kekakkLikkflpGpltlvlkkkkeiprlvskkrktvaiRvPdeeialellee 128
                 +    ++i      ++ l+l + k +  ++++    v++RvP +  +l+  ++
  MMETSP1137-20121227|3204_1  60 DAGNDEMIYDAAQQRYCLLLDHDKCVRTVTAS-TTSVMLRVPGDASCLQFTQA 111
                 55556677777788999999999988877777.889********999998775 PP

  == domain 2    score: 1.4 bits;  conditional E-value: 0.0085
   TIGR00057 109 rktvaiRvPdeeialelleel.gkPivatSanl 140
                    +a+R+P e  +l+l+++  +  ++a+S  +
  MMETSP1137-20121227|3204_1 191 GSAIALRLPTEIGCLQLVRAGaELEMAACSPAV 223
                 368**************9874134577777655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (418 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        76  (0.0185275); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.29u 0.15s 00:00:00.43 Elapsed: 00:00:00.35
# Mc/sec: 1576.33
//
Query:       MMETSP1137-20121227|3205_1  [L=212]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (212 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       124  (0.0302292); expected 82.0 (0.02)
Passed bias filter:                      107  (0.0260848); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.16s 00:00:00.36 Elapsed: 00:00:00.28
# Mc/sec: 964.89
//
Query:       MMETSP1137-20121227|3206_1  [L=233]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.054   11.7   0.4        0.1   10.9   0.3    1.4  1  TIGR03050 PS_I_psaK_plant: photosystem I reaction center PsaK


Domain annotation for each model (and alignments):
>> TIGR03050  PS_I_psaK_plant: photosystem I reaction center PsaK
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.3   2.4e-05       0.1      10      55 ..       7      52 ..       2      73 .. 0.89

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 2.4e-05
   TIGR03050 10 mvtsttlmlfagrfGlapsakrkataGlklearesGlqtgdpaGft 55
                m t+ t++l+a+r  ++p   +  t  +++      +q+  pa  +
  MMETSP1137-20121227|3206_1  7 MATAPTATLMATRARITPLKAKSMTLAVRMRHISVTVQATSPASHS 52
                9999**************************************9875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (233 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        73  (0.0177962); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.20u 0.11s 00:00:00.31 Elapsed: 00:00:00.39
# Mc/sec: 788.55
//
Query:       MMETSP1137-20121227|3207_1  [L=122]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (122 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        27  (0.00658216); expected 82.0 (0.02)
Passed bias filter:                       25  (0.00609459); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:01.27
# Mc/sec: 126.79
//
Query:       MMETSP1137-20121227|3208_1  [L=217]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (217 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       102  (0.0248659); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.18s 00:00:00.39 Elapsed: 00:00:00.70
# Mc/sec: 409.17
//
Query:       MMETSP1137-20121227|3209_1  [L=788]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (788 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        95  (0.0231594); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.14s 00:00:00.60 Elapsed: 00:00:01.18
# Mc/sec: 881.42
//
Query:       MMETSP1137-20121227|3210_1  [L=378]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.1e-33  114.4   0.0    1.8e-33  113.8   0.0    1.2  1  TIGR03413 GSH_gloB: hydroxyacylglutathione hydrolase
    0.00016   19.8   0.0    0.00031   18.9   0.0    1.4  1  TIGR02981 phageshock_pspE: phage shock operon rhodanese PspE


Domain annotation for each model (and alignments):
>> TIGR03413  GSH_gloB: hydroxyacylglutathione hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  113.8   0.0   8.6e-37   1.8e-33      10     207 ..     140     345 ..     137     353 .. 0.86

  Alignments for each domain:
  == domain 1    score: 113.8 bits;  conditional E-value: 8.6e-37
   TIGR03413  10 Nyiwllkdeks.eavvvDpgeaep..vlealeekglkleaillTHhHaDHvggvaellekfpvkvvgpaeeripgltkevkegdevel..lelevevlevpGHtlgHiayyleeekvlFcgDtLfsaGCGr..lfegtaeqmleslq.klaaLpeetkvycaHEYtlsNlrFalavepenealkerlkevealrakgkptlPstla 207
                  y ++l d+k+ ea+++Dp  ++    le+++++gl+l++ l+TH HaDH+ g+ el+++++    + ++ + +++++ +keg+++ +  ++  ++vl++pGHt+g +++++e  +++F+gD L+  GCGr    eg+a+++++s++ kl +Lp++t vy+aH+Y  +  +  ++ + +n+ l++  +e ++  a+ ++  P+++a
  MMETSP1137-20121227|3210_1 140 TYTYILADSKTkEAIIIDPVLEQVdrDLEVISSQGLTLTQALNTHCHADHITGTGELKKRVGGLRSAISAASGAKADVMLKEGESICWsdGRPLLRVLSTPGHTNGCVSFVCEPLGAVFTGDVLLIGGCGRtdFQEGSAADLYDSVHsKLFTLPDNTIVYPAHDYKGRLRSTIKTEKITNPRLAKSKEEFAQIMANLNLPYPAQIA 345
                 599****99999*******87654116899********************************555555556677889***********5555669************************************54479*********9549****************87766666666778999999999988888887777777765 PP

>> TIGR02981  phageshock_pspE: phage shock operon rhodanese PspE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.0   1.5e-07   0.00031      34      91 ..      41     100 ..      23     108 .. 0.87

  Alignments for each domain:
  == domain 1    score: 18.9 bits;  conditional E-value: 1.5e-07
   TIGR02981  34 hvqgainiplkevkeriet.vvp.dkndtvklycnagrqsgqakdillemgythvenagg 91 
                  vqg+i  p+     ++ t ++p dk  t+ ++c+ g ++g+a   l  +gy    n gg
  MMETSP1137-20121227|3210_1  41 MVQGSISAPFDMATGQLPTeALPeDKAATLVVHCKVGGRAGKAAAYLQSIGYXXXXNXGG 100
                 69********99999987634554899********************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (378 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        87  (0.0212092); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.30u 0.16s 00:00:00.46 Elapsed: 00:00:00.60
# Mc/sec: 831.53
//
Query:       MMETSP1137-20121227|3211_1  [L=396]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   1.2e-146  486.0   3.2   1.5e-146  485.8   2.2    1.0  1  TIGR00019 prfA: peptide chain release factor 1
    3.1e-75  251.2   1.9    3.9e-75  250.9   1.3    1.0  1  TIGR00020 prfB: peptide chain release factor 2
      2e-23   80.8   0.7    3.1e-23   80.2   0.5    1.3  1  TIGR03072 release_prfH: putative peptide chain release factor H


Domain annotation for each model (and alignments):
>> TIGR00019  prfA: peptide chain release factor 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  485.8   2.2  1.1e-149  1.5e-146       1     359 [.      34     393 ..      34     395 .. 0.98

  Alignments for each domain:
  == domain 1    score: 485.8 bits;  conditional E-value: 1.1e-149
   TIGR00019   1 llkkslleklesleeryeeleelLsdpevisdqkklrklskeysqleeivkkyeeykklqedlkeakelle.ke.dkelrelakeeleelekkieeleeqlkvlLlPkDpndeknvileiragtGGdeaalfagdLfrmYsryaeskkWkveilsaseselgGykevileikGegvysklkfesGvhRvqRvPvtesqGRvhtsaatvavlPeveevevkinpkdlridtyrssGaGGqhvnttdsavrithlPtgivvecqdersqlknkekalkvLraklleaeeekqqeeqakeRksqvgsgdRseriRtYnfpqnRvtdhRinltlykLdevlegdldeliealiaeeqkekleels 359
                 ++++ +l++l+ ++e+ + l+e L+dpe+ sd++++ +++ke+++lee+v +y++y  l+e+l+ a+el + ++ d e++e+a+ee+++le ++e l+e++kvlLlP Dpnd+knv+leiragtGGdeaa++a+dL+++Y+r+a++++W++ ++s s se gG +++++eikG+ vysklkfe+GvhRvqRvP+te+qGR+hts+atva++Pev+ev v+i+pkd++++t rs+GaGGq+vn++++av++th+Ptgi++ +++ersqlknke a+++Lr++l++++ e+q+++ a++Rk qvgsg Rse+iRtYn+++ R tdhR+  + + Ld vl+g++  +i+a+ia +q+e+l+el+
  MMETSP1137-20121227|3211_1  34 MIDRFVLDRLKLVTETFQSLTERLEDPELLSDTQEMLRVTKERAKLEETVMAYKQYLALEEQLNGARELFNeAGgDTEMKEMAREEMRDLEDELEALDERIKVLLLPSDPNDDKNVMLEIRAGTGGDEAAIWASDLLNLYTRFAQEQGWQTRVVSLSDSEAGGCRDATIEIKGDSVYSKLKFEAGVHRVQRVPATETQGRIHTSTATVAIMPEVDEVTVTIDPKDIEMSTARSGGAGGQNVNKVETAVDLTHKPTGIRLFVTQERSQLKNKELAMSMLRSRLYAMQIEEQAAKIASQRKMQVGSGARSEKIRTYNYKDSRCTDHRLSSN-FPLDSVLSGNIAPIIDACIAMDQQEQLRELQ 393
                 678889****************************************************************95448************************************************************************************************************************************************************************************************************************************************************99.9**************************9886 PP

>> TIGR00020  prfB: peptide chain release factor 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  250.9   1.3   2.8e-78   3.9e-75      30     362 ..      47     382 ..      36     385 .. 0.91

  Alignments for each domain:
  == domain 1    score: 250.9 bits;  conditional E-value: 2.8e-78
   TIGR00020  30 karleklekeledpnlWndqekaqkvikeksslkekldkleelkksledlsellelakeek.deellaeleeelkalekelkele..lktll..sgeydaknalltiqaGaGGteaqdWasmLlrmylrwaerrgykveildlseaeeaGiksvtllikgeyayGyLksekGvhrLvrisPfdanarrhtsfasvevlPevdddidieikeedvridvyrasGaGGqhvnktdsavrithiptgivvqcqnersqlknkekalkllkakLyelelekeeaekkaledekkeigW.GsqirsyvlhpyklvkdlrtevevgnveavldGdidefieaylk 362
                  +  + l ++ledp+l  d++   +v+ke+ +l+e++  +++     e+l+   el +e+  d+e+   + ee++ le el++l+  +k+ll  s+++d+kn +l+i+aG+GG ea+ Was Ll +y+r+a+++g+++ ++ ls++e +G + +t++ikg+  y  Lk e Gvhr+ r+   ++++r hts a+v ++Pev d++ ++i+++d+ + + r+ GaGGq+vnk ++av +th ptgi     +ersqlknke a+ +l+++Ly +++e++ a+  ++++ + ++g   ++ir+y +++ ++  d+r   +    ++vl G+i  +i+a + 
  MMETSP1137-20121227|3211_1  47 TETFQSLTERLEDPELLSDTQEMLRVTKERAKLEETVMAYKQYLALEEQLNGARELFNEAGgDTEMKEMAREEMRDLEDELEALDerIKVLLlpSDPNDDKNVMLEIRAGTGGDEAAIWASDLLNLYTRFAQEQGWQTRVVSLSDSEAGGCRDATIEIKGDSVYSKLKFEAGVHRVQRVPATETQGRIHTSTATVAIMPEV-DEVTVTIDPKDIEMSTARSGGAGGQNVNKVETAVDLTHKPTGIRLFVTQERSQLKNKELAMSMLRSRLYAMQIEEQAAKIASQRKMQVGSGArSEKIRTYNYKD-SRCTDHRLSSNF-PLDSVLSGNIAPIIDACIA 382
                 456788999*********************************9999999999999999986266777777899********98862244444459**********************************************************************************************************.889****************************************************************************88888877776642579********.999****98765.689************9886 PP

>> TIGR03072  release_prfH: putative peptide chain release factor H
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.2   0.5   2.3e-26   3.1e-23       1     198 [.     149     350 ..     149     352 .. 0.84

  Alignments for each domain:
  == domain 1    score: 80.2 bits;  conditional E-value: 2.3e-26
   TIGR03072   1 ilLqlssaqGPaecclavakalerlkreaakrkvkvevlekeagekartlrsvlvsLeGeaaealaerweGtllwiaespyRkkhrRknWfvgverf.....saeeeaeedeirfetlrasGpGGqhvnktesavRavhlasGisvkvqseRsqhankrLaklllavkLekleeeq.aaalraerrsahhqieRGnpvkvfkge 198
                 ++L + +++G +e+       l+  +r a++++ +  v+   ++e+ +  r ++++++G++  +   ++e ++  + + p  +++ R     +   +     + +  +  ++i + t+r+ G GGq vnk e+av  +h+++Gi   v +eRsq +nk La+ +l  +L +++ e+ aa+ +++r+ +  + +R + +++++++
  MMETSP1137-20121227|3211_1 149 VMLEIRAGTGGDEAAIWASDLLNLYTRFAQEQGWQTRVVSLSDSEA-GGCRDATIEIKGDSVYSK-LKFEAGVHRVQRVPATETQGRIHTSTATVAImpevdEVTVTIDPKDIEMSTARSGGAGGQNVNKVETAVDLTHKPTGIRLFVTQERSQLKNKELAMSMLRSRLYAMQIEEqAAKIASQRKMQVGSGARSEKIRTYNYK 350
                 5799***********************************9988875.6789********987654.46777777788888888877766555444433434455667889***********************************************************99887650556677777777888888888888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (396 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       199  (0.0485129); expected 82.0 (0.02)
Passed bias filter:                      118  (0.0287665); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.31u 0.16s 00:00:00.47 Elapsed: 00:00:00.49
# Mc/sec: 1066.69
//
Query:       MMETSP1137-20121227|3212_1  [L=187]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (187 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       104  (0.0253535); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.17s 00:00:00.36 Elapsed: 00:00:00.44
# Mc/sec: 560.95
//
Query:       MMETSP1137-20121227|3213_1  [L=184]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (184 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        34  (0.00828864); expected 82.0 (0.02)
Passed bias filter:                       33  (0.00804486); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.19s 00:00:00.35 Elapsed: 00:00:00.40
# Mc/sec: 607.15
//
Query:       MMETSP1137-20121227|3214_1  [L=106]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (106 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        49  (0.0119454); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.16s 00:00:00.32 Elapsed: 00:00:00.24
# Mc/sec: 582.95
//
Query:       MMETSP1137-20121227|3215_1  [L=499]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.7e-35  119.6   0.5    2.9e-27   93.1   0.0    2.7  2  TIGR03799 NOD_PanD_pyr: putative pyridoxal-dependent aspartate 1-decarboxylase
    5.8e-17   59.4   0.0    6.9e-15   52.6   0.0    2.1  1  TIGR03812 tyr_de_CO2_Arch: tyrosine decarboxylase MnfA
    1.8e-05   22.1   0.0    2.9e-05   21.3   0.0    1.2  1  TIGR03235 DNA_S_dndA: cysteine desulfurase DndA
     0.0022   14.3   0.1      0.049    9.9   0.0    2.6  4  TIGR03811 tyr_de_CO2_Ent: tyrosine decarboxylase
     0.0034   13.9   0.0     0.0052   13.3   0.0    1.2  1  TIGR01788 Glu-decarb-GAD: glutamate decarboxylase
  ------ inclusion threshold ------
      0.014   12.3   0.0      0.022   11.6   0.0    1.2  1  TIGR02006 IscS: cysteine desulfurase IscS


Domain annotation for each model (and alignments):
>> TIGR03799  NOD_PanD_pyr: putative pyridoxal-dependent aspartate 1-decarboxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.4   0.1   2.8e-09   1.9e-06     111     243 ..     136     246 ..      91     249 .. 0.73
   2 !   93.1   0.0   4.3e-30   2.9e-27     271     470 ..     249     454 ..     246     464 .. 0.87

  Alignments for each domain:
  == domain 1    score: 24.4 bits;  conditional E-value: 2.8e-09
   TIGR03799 111 lvalnqnlvkietskaftplerqvlgmlhklvyeqddefykkwlhsaehalGalcsGGtvanitalwvarnkllkadgefkGvareGlvkalkhygyeglailvserGhyslkkaadvlGiGrdnlvavktde 243
                   a+n n+   e +  +t +er++l+ +     +   +f       aeh  G +  GG++ ni a+ +ar ++  a       ++ G+ ++        l  +vs+  hys  kaa +lG G+dnlv+v+td+
  MMETSP1137-20121227|3215_1 136 ASAMNANVHTFEVAPVLTLMERHLLAHIAA---ALGPSFV------AEH-DGLFVPGGALGNIYAMHLARHRAAPAT------HEGGMWASAP------LVGFVSKEAHYSYLKAARLLGFGSDNLVEVETDA 246
                 556777777777777777777776664433...2233333......233.388999**************9998875......4568877655......55579***************************97 PP

  == domain 2    score: 93.1 bits;  conditional E-value: 4.3e-30
   TIGR03799 271 GvaGttetGnvdPldeladiaqeldchfhvdaawGGatllsekyrkllkGieradsvtidahkqlyvPmGaGlvlfkdPalv.kaiehhaeyilrk....GskdlGshtleGsrsgmamlvyaslkiigrkGyellidqsiekakyfaelikqqd.dfelvtePelclltyryvPeevkqalakadeekkeklnelldkltkfiqk 470
                   aGtt  G  dPl+ela+++ e++ ++hvdaawGGa+l+s  +r  l+G+e ads +  ahk l   +   + + ++ ++  +a +  a y+++k     + d G +t++  r++  + ++  +k +g +G +  ++++   a y  e i+++d  f l  +P  + + + yvP++++  l+  + ++++ l+++   +   +q+
  MMETSP1137-20121227|3215_1 249 ATAGTTVIGAFDPLRELAAVCAETKMWLHVDAAWGGAALFSAAHRGDLDGVELADSFSWSAHKMLGAALQCAVFITRHAHALrEANASQAAYLFQKdkmhAALDAGDKTIQCGRKADMLKLWLLFKSLGDDGVARRVEHAYALAAYAVERINASDgAFVLTHKPSCTNVCFWYVPRSMRPLLSAEHLTTEHPLHKVAPPIKAALQR 454
                 469******************************************************************99999999887661566789*****9722224679********************************************999987636899999******************9887777777777666666655554 PP

>> TIGR03812  tyr_de_CO2_Arch: tyrosine decarboxylase MnfA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.6   0.0     1e-17   6.9e-15      60     315 ..     155     408 ..     139     419 .. 0.78

  Alignments for each domain:
  == domain 1    score: 52.6 bits;  conditional E-value: 1e-17
   TIGR03812  60 leeevvellgellhl...kealGyivsGGteanilalraaknlakeekk.....ekpeii..vPesahfsfekaaellglelvkaeldeeykvdvkkveeliedntiglvgiaGttelGlvDdieelskiakendlylhvDaafGGfviPflkkkgeklakfDfklkGvksitiDPhkmGlapiPaGgllfrekeylkslev.eapyLtekk.........qatlvGtrsGasaaatyavlkylGreGyrkvveecmeltrylveelkklglepvi 315
                 +e+++++ ++  l      e  G  v GG+  ni a+  a++ a    +      ++ ++  v + ah+s+ kaa llg                   ++l+e +t+++ + aGtt +G+ D++ el+ +  e +++lhvDaa+GG  +  +     +  + D  ++  +s +   hkm  a++ +   + r+ + l++ +  +a yL +k          + t+   r  a+ +  + ++k lG +G  + ve++  l+ y ve++++ + + v+
  MMETSP1137-20121227|3215_1 155 MERHLLAHIAAALGPsfvAEHDGLFVPGGALGNIYAMHLARHRAAPATHeggmwASAPLVgfVSKEAHYSYLKAARLLGFGS----------------DNLVEVETDAVGATAGTTVIGAFDPLRELAAVCAETKMWLHVDAAWGGAALFSA----AHRGDLD-GVELADSFSWSAHKMLGAALQCAVFITRHAHALREANAsQAAYLFQKDkmhaaldagDKTIQCGRK-ADMLKLWLLFKSLGDDGVARRVEHAYALAAYAVERINASDGAFVL 408
                 5666666666666542225677999999999999999999987765554467774555554589999999999999999753................4567788999**************************************998655....3333444.456679************************999988752799**9876443333222334444443.788999*****************************9988776665 PP

>> TIGR03235  DNA_S_dndA: cysteine desulfurase DndA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3   0.0   4.2e-08   2.9e-05     134     212 ..     239     323 ..     236     333 .. 0.74

  Alignments for each domain:
  == domain 1    score: 21.3 bits;  conditional E-value: 4.2e-08
   TIGR03235 134 airedtllvslmavnnevGslqpireiaevleerevflhvDaaqvvgkiav.....dlsakr.idlisvsghkiygPkGiGalvi 212
                  ++ +t +v   a+   +G+ +p+re+a v+ e++++lhvDaa + + ++      dl+  +  d  s s+hk+ g     a++i
  MMETSP1137-20121227|3215_1 239 LVEVETDAVGATAGTTVIGAFDPLRELAAVCAETKMWLHVDAAWGGAALFSaahrgDLDGVElADSFSWSAHKMLGAALQCAVFI 323
                 56678899999999999*************************9987766551111155544444667999999988765555555 PP

>> TIGR03811  tyr_de_CO2_Ent: tyrosine decarboxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0      0.39   2.7e+02      86     161 ..     117     195 ..     107     199 .. 0.73
   2 !    9.9   0.0   7.1e-05     0.049     227     255 ..     217     245 ..     206     248 .. 0.91
   3 ?    1.2   0.0     0.031        21     283     326 ..     248     286 ..     244     291 .. 0.78
   4 ?   -2.9   0.0      0.55   3.7e+02     371     420 ..     299     349 ..     287     364 .. 0.75

  Alignments for each domain:
  == domain 1    score: -2.5 bits;  conditional E-value: 0.39
   TIGR03811  86 ywghmnsetlmpallaynyamlwngnnvayesspatsqmeeevgkefakllgyk...ngwghivadgslanleglwyar 161
                 ++  +   + + ++l   +a   n n  ++e +p  + me  +  ++a  lg     +  g  v  g+l n+  +  ar
  MMETSP1137-20121227|3215_1 117 FFNQLYGRADLNSVLGDWVASAMNANVHTFEVAPVLTLMERHLLAHIAAALGPSfvaEHDGLFVPGGALGNIYAMHLAR 195
                 5555666666778888888889999999999999999999999888888876441113445577777777777777666 PP

  == domain 2    score: 9.9 bits;  conditional E-value: 7.1e-05
   TIGR03811 227 vpqtkhyswlkaadiigigldqvipvpvd 255
                 v +  hys+lkaa ++g g d+++ v+ d
  MMETSP1137-20121227|3215_1 217 VSKEAHYSYLKAARLLGFGSDNLVEVETD 245
                 67889*******************99987 PP

  == domain 3    score: 1.2 bits;  conditional E-value: 0.031
   TIGR03811 283 vgvvgsteegavdsidkivalreklvkegiyfylhvdaayggya 326
                  + +g+t  ga d++ +++a+  +     + ++lhvdaa+gg a
  MMETSP1137-20121227|3215_1 248 GATAGTTVIGAFDPLRELAAVCAE-----TKMWLHVDAAWGGAA 286
                 567888888888888888887654.....5689********965 PP

  == domain 4    score: -2.9 bits;  conditional E-value: 0.55
   TIGR03811 371 ieeaesvtidphkm.gyipysaggivikdirmrdvisyfatyvfekgadip 420
                 +e+a+s +   hkm g     a  i+ +   +r+  +  a+y+f+k     
  MMETSP1137-20121227|3215_1 299 VELADSFSWSAHKMlGAALQCAVFITRHAHALREANASQAAYLFQKDKMHA 349
                 678888888888884555566666777777889999999999998875544 PP

>> TIGR01788  Glu-decarb-GAD: glutamate decarboxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   0.0   7.5e-06    0.0052     182     362 ..     239     419 ..     228     436 .. 0.78

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 7.5e-06
   TIGR01788 182 lvdentigvvailGttytGeledvkklndlLeeleaktgldvpihvdaasGGfivPfvepdleWdfr.lprvvsinvsGhkyGLvypGvGwviwrdeeaLpeeLifkvnyLGgeeetf.tlnfsrpasq......vvaqyynflrlGkeGyrkimqklldvaralaeeleklgafeilskgegvPlvaf 362
                 lv+ +t +v a+ Gtt  G ++++++l+ +  e++      + +hvdaa GG  +   ++  + d+   +   s + s hk   +   +   i r+++aL e    +  yL ++ +   +l+    + q      +++ +  f +lG +G  + +++ ++ a++  e++++++   +l+++++   v+f
  MMETSP1137-20121227|3215_1 239 LVEVETDAVGATAGTTVIGAFDPLRELAAVCAETK------MWLHVDAAWGGAAL--FSAAHRGDLDgVELADSFSWSAHKMLGAALQCAVFITRHAHALREANASQAAYLFQKDKMHaALDAGDKTIQcgrkadMLKLWLLFKSLGDDGVARRVEHAYALAAYAVERINASDGAFVLTHKPSCTNVCF 419
                 56678889999****************99987655......89*********654..3444555554267789********999999999999*********999999999766543314444333222111111567788899999999999999999999999999999987888888888888887 PP

>> TIGR02006  IscS: cysteine desulfurase IscS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   3.2e-05     0.022     153     220 ..     254     327 ..     237     337 .. 0.79

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 3.2e-05
   TIGR02006 153 neiGviqdiaaigelcrerkvlfhvdaaqsvGkv.....pidleelkv.dllslsahkiyGpkGiGalyvrrkp 220
                   iG  +++ +++++c e k+ +hvdaa +   +       dl+ +++ d  s sahk+ G     a+++ r+ 
  MMETSP1137-20121227|3215_1 254 TVIGAFDPLRELAAVCAETKMWLHVDAAWGGAALfsaahRGDLDGVELaDSFSWSAHKMLGAALQCAVFITRHA 327
                 56999**********************99876652211134677776448899*********999999999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (499 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       116  (0.0282789); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.47u 0.19s 00:00:00.65 Elapsed: 00:00:00.61
# Mc/sec: 1079.71
//
Query:       MMETSP1137-20121227|3216_1  [L=248]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.36    9.1   3.7       0.36    9.1   1.6    1.7  2  TIGR04102 SWIM_PBPRA1643: SWIM/SEC-C metal-binding motif protein, PBPRA1643 family


Domain annotation for each model (and alignments):
>> TIGR04102  SWIM_PBPRA1643: SWIM/SEC-C metal-binding motif protein, PBPRA1643 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0      0.26   1.1e+03      87     103 ..      76      92 ..      59      97 .. 0.73
   2 ?    9.1   1.6   8.8e-05      0.36      84     107 ..      99     122 ..      93     123 .. 0.91

  Alignments for each domain:
  == domain 1    score: -2.0 bits;  conditional E-value: 0.26
   TIGR04102  87 ktpnrndpCsCGsgkky 103
                  +++r +  + Gsgk +
  MMETSP1137-20121227|3216_1  76 GKAKRSERIKPGSGKGF 92 
                 45788888888999876 PP

  == domain 2    score: 9.1 bits;  conditional E-value: 8.8e-05
   TIGR04102  84 tvektpnrndpCsCGsgkkykkCC 107
                 ++++ p+ +  C C sg  y  CC
  MMETSP1137-20121227|3216_1  99 NFDRRPKPDALCACSSGSTYAECC 122
                 688999999*************** PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (248 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        55  (0.0134081); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.22u 0.12s 00:00:00.34 Elapsed: 00:00:00.34
# Mc/sec: 962.74
//
Query:       MMETSP1137-20121227|3217_1  [L=516]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.052   11.4   2.0       0.13   10.0   1.4    1.7  1  TIGR03741 PRTRC_E: PRTRC system protein E


Domain annotation for each model (and alignments):
>> TIGR03741  PRTRC_E: PRTRC system protein E
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   1.4   3.3e-05      0.13      54     101 ..     184     231 ..     178     236 .. 0.78

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 3.3e-05
   TIGR03741  54 eELdegfaealkqyveareslaeqvaatravleaaaakeaeaakakka 101
                  ++d  f +a   ++e+++ + +  +at+a+++ aa+++a +a ++  
  MMETSP1137-20121227|3217_1 184 TDIDDVFDAAAMVVSESARAISDSFTATTAIADTAASTSATSATPTST 231
                 58999***99***********************655555544444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (516 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       161  (0.0392491); expected 82.0 (0.02)
Passed bias filter:                      102  (0.0248659); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.15s 00:00:00.53 Elapsed: 00:00:00.52
# Mc/sec: 1309.74
//
Query:       MMETSP1137-20121227|3218_1  [L=631]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.037   10.1   0.0        1.8    4.5   0.0    2.0  2  TIGR01823 PabB-fungal: aminodeoxychorismate synthase


Domain annotation for each model (and alignments):
>> TIGR01823  PabB-fungal: aminodeoxychorismate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.0   0.00091       3.7     385     442 ..     188     245 ..     164     255 .. 0.82
   2 ?    4.5   0.0   0.00044       1.8     385     448 ..     549     612 ..     525     624 .. 0.80

  Alignments for each domain:
  == domain 1    score: 3.4 bits;  conditional E-value: 0.00091
   TIGR01823 385 atasenedanelvaDakLvfversivvdhktgklyvqsldvtdevarewlgdLaastv 442
                 + a e e  + +  + k+ fv+rs+ +  k +k  v+s +++de+   +  d+ +s  
  MMETSP1137-20121227|3218_1 188 HGAVEAEGSKTDRGEKKMSFVKRSLSFGRKERKQSVKSAEPDDETDVRHAVDMDDSDF 245
                 55666777788888999***************************99888888877754 PP

  == domain 2    score: 4.5 bits;  conditional E-value: 0.00044
   TIGR01823 385 atasenedanelvaDakLvfversivvdhktgklyvqsldvtdevarewlgdLaastvrkkvik 448
                 + a e e  + +  + k+ fv+rs+ +  k +k  v+s +++de+   +  ++ +s   k  + 
  MMETSP1137-20121227|3218_1 549 HGAVEAEGSKTDRGEKKMSFVKRSLSFGRKERKQSVKSAEPDDETDVRHAVEMDDSDFTKEQKA 612
                 55666777788888999****************************9999989988876655444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (631 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        57  (0.0138957); expected 82.0 (0.02)
Passed bias filter:                       37  (0.00901999); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.16s 00:00:00.55 Elapsed: 00:00:00.47
# Mc/sec: 1772.02
//
Query:       MMETSP1137-20121227|3219_1  [L=422]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   5.3e-130  430.8  12.2   6.5e-128  423.9   8.5    2.1  1  TIGR01019 sucCoAalpha: succinate-CoA ligase, alpha subunit
    1.2e-19   68.1   1.6    1.9e-19   67.5   1.1    1.2  1  TIGR02717 AcCoA-syn-alpha: acetyl coenzyme A synthetase (ADP forming), alpha domain


Domain annotation for each model (and alignments):
>> TIGR01019  sucCoAalpha: succinate-CoA ligase, alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  423.9   8.5  3.2e-131  6.5e-128       3     284 ..      32     329 ..      30     331 .. 0.94

  Alignments for each domain:
  == domain 1    score: 423.9 bits;  conditional E-value: 3.2e-131
   TIGR01019   3 ldkdtkvivqGitGkqgsfhteqmleyGtkivgGvtpgkgGtevlglpvfdsvkeaveetganasvifvPapfakdaileaidaeielivvitegiPvkdtlkvaelleea...............ktkliGPncPGiisPgeckiGimPaeilkkGkvGivsrsGtltyeavaqlteaglGqstcvGiGGdpvnGtsfidvleafeeddeteaivliGeiGGsaeeeaaefiken.vskPvvafiaGltaPkgkrmGhaGaiisggkGtaeskiealeaaGvkvvkslaeiaelvae 284
                 ++kdtkvi+qG+tGk+g+fh +q++eyGtk+vgGv+p+k+G  +lglpvf sv+ea++etga+a+v++vP+p ++ aileai+ae+ liv+iteg+P +d++kv+++l ++               k++liGPncPGii+PgeckiGimP++i+ kGk+GivsrsGtltyeav q+t++glGq++c+GiGGdp nGt+f+d+l+ f +d+ete iv+iGeiGG+aee+aa+fi ++ ++kPvv+fiaGltaP+g+rmGhaGaiisgg Gta+skie l aaGv+++ s+a++++++a+
  MMETSP1137-20121227|3219_1  32 VNKDTKVICQGFTGKTGTFHCQQAIEYGTKMVGGVNPKKAGDVHLGLPVFASVAEAKKETGADATVLYVPPPACAAAILEAIEAEMPLIVCITEGVPQHDMVKVKKALLSQsksrliglkallsqsKSRLIGPNCPGIIKPGECKIGIMPGYIHSKGKIGIVSRSGTLTYEAVNQTTREGLGQTMCIGIGGDPFNGTNFVDCLDYFYNDPETEGIVMIGEIGGTAEEQAADFIAAQtTKKPVVSFIAGLTAPPGRRMGHAGAIISGGAGTATSKIEKLTAAGVTISMSPAQLGSTMAK 329
                 89*****************************************************************************************************98764322122333333333333899********************************************************************************************************8774789*****************************************************99976 PP

>> TIGR02717  AcCoA-syn-alpha: acetyl coenzyme A synthetase (ADP forming), alpha domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.5   1.1     9e-23   1.9e-19      38     257 ..      62     296 ..      43     329 .. 0.77

  Alignments for each domain:
  == domain 1    score: 67.5 bits;  conditional E-value: 9e-23
   TIGR02717  38 kiypvnpkae.ei.lgvkaYksvkeipee..vdlavivvpaklvlevveecgekgvkgvvvitaGFkEvG.........eeGaelekklveiakkygvrllGPNvlGiinteiklnatfaktapkkGeialisQSGalllalldwaekekvGlsklvslGnk..adidesdlleylaeDeetkvillYlE.gikdgkkFlktakeiskkkPivvlksGksea.GakaaasHTGalag 257
                  + +vnpk+  ++ lg+++++sv+e ++e   d  v+ vp  ++ +++ e+ e+++  +v it G              ++ +++   l+++ +++  rl+GPN+ Gii++       +  +  +kG+i+++s SG l+   ++++++e++G    +++G      +++ d l+y+ +D+et+ i++  E g +  ++  + +   + kkP+v + +G +   G+   + H Ga+ +
  MMETSP1137-20121227|3219_1  62 MVGGVNPKKAgDVhLGLPVFASVAEAKKEtgADATVLYVPPPACAAAILEAIEAEMPLIVCITEGVPQHDmvkvkkallSQSKSRLIGLKALLSQSKSRLIGPNCPGIIKPGECKIGIMPGYIHSKGKIGIVSRSGTLTYEAVNQTTREGLGQTMCIGIGGDpfNGTNFVDCLDYFYNDPETEGIVMIGEiGGTAEEQAADFIAAQTTKKPVVSFIAGLTAPpGR--RMGHAGAIIS 296
                 466899987546647**********97662379********************************866541111111112233333446778889999*************988999999999*************************************8733468999*************9999887433444566677777889**********9864144..4678888753 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (422 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       152  (0.0370551); expected 82.0 (0.02)
Passed bias filter:                      120  (0.029254); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.36u 0.16s 00:00:00.52 Elapsed: 00:00:00.39
# Mc/sec: 1428.19
//
Query:       MMETSP1137-20121227|3220_1  [L=152]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (152 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        76  (0.0185275); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.15s 00:00:00.31 Elapsed: 00:00:00.27
# Mc/sec: 743.05
//
Query:       MMETSP1137-20121227|3222_1  [L=65]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (65 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        42  (0.0102389); expected 82.0 (0.02)
Passed bias filter:                       42  (0.0102389); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:00.32
# Mc/sec: 268.10
//
Query:       MMETSP1137-20121227|3223_1  [L=646]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (646 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        95  (0.0231594); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.18s 00:00:00.60 Elapsed: 00:00:00.78
# Mc/sec: 1093.14
//
Query:       MMETSP1137-20121227|3224_1  [L=303]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (303 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        82  (0.0199902); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.11s 00:00:00.36 Elapsed: 00:00:00.46
# Mc/sec: 869.41
//
Query:       MMETSP1137-20121227|3225_1  [L=1265]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.1e-38  130.8   0.0    1.4e-14   51.3   0.0    3.1  3  TIGR02938 nifL_nitrog: nitrogen fixation negative regulator NifL
      7e-23   79.0   0.0    1.2e-07   29.7   0.0    3.6  3  TIGR00229 sensory_box: PAS domain S-box protein


Domain annotation for each model (and alignments):
>> TIGR02938  nifL_nitrog: nitrogen fixation negative regulator NifL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.3   0.0   8.2e-12   1.7e-08      13     113 ..     487     595 ..     478     630 .. 0.78
   2 !   51.3   0.0   6.9e-18   1.4e-14       8     123 ..     752     870 ..     748     888 .. 0.90
   3 !   44.3   0.0   8.9e-16   1.8e-12       8     129 ..    1090    1214 ..    1085    1230 .. 0.89

  Alignments for each domain:
  == domain 1    score: 31.3 bits;  conditional E-value: 8.2e-12
   TIGR02938  13 apvaisitdlkanil...yanaafseitGyakeeviGknesvlsnrttPpevyqalwgsl....aekkPwaGkllnrrkdgelylaeltvaPvlneaGetthflG.mhr 113
                  +va+ + d +   l   ++n+af+++tGy+ +e +Gkn   l  r+t      ++  +l    a       ++ln  k ge +   +++ Pv +++G  t+ +G mhr
  MMETSP1137-20121227|3225_1 487 LDVAVVVVDVRVGGLplkFVNSAFENLTGYSAHEAVGKNCRFLQGRKTQAVSVGQFVHKLreptASVALDVVHVLNYTKQGEEFTNCVSLHPVFDQTGRYTYSIGvMHR 595
                 578888888887543334**************************9999876544444444011033444456799******************************7787 PP

  == domain 2    score: 51.3 bits;  conditional E-value: 6.9e-18
   TIGR02938   8 qtvdqapvaisitdlka..n.ilyanaafseitGyakeeviGknesvlsnrttPpevyqalwgslaekkPwaGkllnrrkdgelylaeltvaPvlneaGetthflGmhrdvtelheleq 123
                 ++v+  pva+s+td+    n ++y+n+ fs +t y ++e +G n  +l    t pe  q + +s+      + k+ln rkdg+ +   l++  vl+ +Ge  + +G+  +++++ +l  
  MMETSP1137-20121227|3225_1 752 AAVEFLPVAVSVTDMSIagNpLIYVNQEFSVLTRYDRQEALGLNCRILQGPETTPESVQRMKESIRSGIANQVKILNYRKDGTSFSNSLALQSVLDSTGERRFCIGVQTKISDEAKLPT 870
                 7899**********864223489***************************99999999*******************************************************999865 PP

  == domain 3    score: 44.3 bits;  conditional E-value: 8.9e-16
   TIGR02938    8 qtvdqapvaisitdlka..n.ilyanaafseitGyakeeviGknesvlsnrttPpevyqalwgslaekkPwaGkllnrrkdgelylaeltvaPvlneaGetthflGmhrdvtelheleqrvanqk 129 
                   tv   p a+ +td+    n ++y+n+ fs++t y +eev+G n   l   +t p   +++ +s+ ++      lln  kdg  +   l++ Pv++ +G   + + +  ++++  el++ + +++
  MMETSP1137-20121227|3225_1 1090 STVXXXPXAVXVTDMSIagNpLVYVNKEFSHLTRYDREEVLGLNCRFLQGPKTCPHAVREIVESIRNHTLLHTSLLNYCKDGSIFENVLSLQPVVDSSGAPRFCISVQSKISNVSELQKWMDQKQ 1214
                  6899999*******864223489**************************************************************************************9999999998776543 PP

>> TIGR00229  sensory_box: PAS domain S-box protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.7   0.0   6.1e-11   1.2e-07      27     122 ..     503     602 ..     477     606 .. 0.81
   2 !   25.2   0.0   1.5e-09   3.2e-06      25     119 ..     771     865 ..     749     868 .. 0.80
   3 !   19.6   0.0   8.3e-08   0.00017      27     113 ..    1111    1197 ..    1096    1208 .. 0.83

  Alignments for each domain:
  == domain 1    score: 29.7 bits;  conditional E-value: 6.1e-11
   TIGR00229  27 ilyvNrafeeifGYsaeeliGrnvlelipeedreevrerierrle.gerepvseerrv..krkdGseiwvevsvspird.aggelgvvgivrDIterkea 122
                 + +vN afe ++GYsa e++G+n + l     + ++   + ++l+ ++ ++    + v  ++k+G+e+   vs+ p+ d  g+ ++ +g+++ ++  k++
  MMETSP1137-20121227|3225_1 503 LKFVNSAFENLTGYSAHEAVGKNCRFLQGRKTQAVSVGQFVHKLRePTASVALDVVHVlnYTKQGEEFTNCVSLHPVFDqTGRYTYSIGVMHRVDGTKRT 602
                 458***********************99999999999999999996666666666666999****************************99988777765 PP

  == domain 2    score: 25.2 bits;  conditional E-value: 1.5e-09
   TIGR00229  25 GnilyvNrafeeifGYsaeeliGrnvlelipeedreevrerierrlegerepvseerrvkrkdGseiwvevsvspird.aggelgvvgivrDIter 119
                 + ++yvN++f  ++ Y ++e++G n ++l  +e   e+ +r+++ +++ +  + +  + +rkdG+ +  +++++++ d  g++++ +g+   I++ 
  MMETSP1137-20121227|3225_1 771 NPLIYVNQEFSVLTRYDRQEALGLNCRILQGPETTPESVQRMKESIRSGIANQVKILN-YRKDGTSFSNSLALQSVLDsTGERRFCIGVQTKISDE 865
                 4479*******************************************44444444444.5******************9*****999998877765 PP

  == domain 3    score: 19.6 bits;  conditional E-value: 8.3e-08
   TIGR00229   27 ilyvNrafeeifGYsaeeliGrnvle.lipeedreevrerierrlegerepvseerrvkrkdGseiwvevsvspird.aggelgvvgiv 113 
                  ++yvN++f  ++ Y +ee++G n +    p+    +vre++e ++      + +  ++ +kdGs++   +s++p+ d +g +++ +++ 
  MMETSP1137-20121227|3225_1 1111 LVYVNKEFSHLTRYDREEVLGLNCRFlQGPKTCPHAVREIVESIRN-HTLLHTSLLNY-CKDGSIFENVLSLQPVVDsSGAPRFCISVQ 1197
                  69************************55666677888888888888.55899999999.******************777666666554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1265 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       100  (0.0243784); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.75u 0.14s 00:00:00.89 Elapsed: 00:00:00.79
# Mc/sec: 2113.50
//
Query:       MMETSP1137-20121227|3226_1  [L=58]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        44  (0.0107265); expected 82.0 (0.02)
Passed bias filter:                       39  (0.00950756); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.15s 00:00:00.27 Elapsed: 00:00:00.54
# Mc/sec: 141.77
//
Query:       MMETSP1137-20121227|3227_1  [L=459]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.7e-10   36.4   0.0    1.7e-09   35.6   0.0    1.3  1  TIGR01130 ER_PDI_fam: protein disulfide isomerases


Domain annotation for each model (and alignments):
>> TIGR01130  ER_PDI_fam: protein disulfide isomerases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.6   0.0   4.1e-13   1.7e-09      29     295 ..       4     286 ..       2     296 .. 0.75

  Alignments for each domain:
  == domain 1    score: 35.6 bits;  conditional E-value: 4.1e-13
   TIGR01130  29 WCGHCksLaPeYekAAeelk.kkspkvklakvDateekelaqkygvsG...yPtLkifrngesssdYnGpReaegivkyl.kkqsgPaskeletvedleklle..........k.kevvvvgvfkdldselvetflevaeklrdkfkavasssdeaalkkleakkdevvlvkkkkeeekeekveeeletdvealekfvkkeslplvgeftketaaki.fesk.plkvlllnveeskkkseellekflevakkfkgk.kvkfavadeeefgkeleelglkaekapav 295
                  C  C +L+ + ++A ++l+ +++ +v+l++   t+  +      v+G    P L ifr+ge + dY G  +++ i + + ++ s+ + + l++v++ e++l+          + k   vvg+f + +s++++ + + a+kl+  ++ +++  d  + +k+  ++++  +++  k +++e+k+ ++     +al++++ ++s++lv+ +++e++ +  ++ + pl  ll+ +++++ +  el+ +f++va + ++k      ++d+e   + +++lg++++++ a+
  MMETSP1137-20121227|3227_1   4 DCEVCAALERQMKAAEAQLRvQAKNAVVLGRLKITSADSPVLARIVQGaltLPKLIIFREGE-AMDYVGSFDKASILETMlRETSRDTIQGLRSVKQTERFLHldswssqhaxDeKPPRVVGFFPSNESAAYAVYRTSARKLQGLIS-FGECFDPTIQRKFLGSPTRKPVIQLVKADKRERKLTYSGPLAPAALSRWIATHSVALVQDLSTESSIEShMAIGvPLFLLLMPDSYEE-ELGELIVHFRSVAARVREKlLFGYGFKDTEPWPQFAQQLGIDHSSTGAF 286
                 5777888888888887776523345788888888777655555566664447999******7.8************9876367778888999999999988642222222221225568***************************9.7777888888877777777777777777789999999999999******************998665440444445554554444444.799**************97666677888999999999999998876555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (459 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       109  (0.0265724); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.14s 00:00:00.48 Elapsed: 00:00:00.60
# Mc/sec: 1009.72
//
Query:       MMETSP1137-20121227|3228_1  [L=215]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (215 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       125  (0.0304729); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.16s 00:00:00.36 Elapsed: 00:00:00.33
# Mc/sec: 859.93
//
Query:       MMETSP1137-20121227|3229_1  [L=770]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   1.5e-130  433.9   0.0   2.1e-130  433.5   0.0    1.2  1  TIGR00614 recQ_fam: ATP-dependent DNA helicase, RecQ family
   7.1e-118  392.4   0.0   7.1e-118  392.4   0.0    1.4  2  TIGR01389 recQ: ATP-dependent DNA helicase RecQ
    4.5e-13   45.6   0.0    7.3e-13   44.9   0.0    1.2  1  TIGR04121 DEXH_lig_assoc: DEXH box helicase, DNA ligase-associated
    5.1e-10   36.0   3.4    8.7e-09   32.0   2.3    2.0  1  TIGR03817 DECH_helic: helicase/secretion neighborhood putative DEAH-box helicase
  ------ inclusion threshold ------
      0.018   11.1   0.0       0.03   10.3   0.0    1.3  1  TIGR01407 dinG_rel: putative DnaQ family exonuclease/DinG family helicase
      0.026   11.5   0.0      0.054   10.4   0.0    1.5  1  TIGR03158 cas3_cyano: CRISPR-associated helicase Cas3, subtype CYANO
       0.24    9.2   6.0       0.53    8.0   4.1    1.5  1  TIGR03499 FlhF: flagellar biosynthesis protein FlhF
        2.2    5.1  11.2        3.2    4.6   7.8    1.2  1  TIGR01628 PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family


Domain annotation for each model (and alignments):
>> TIGR00614  recQ_fam: ATP-dependent DNA helicase, RecQ family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  433.5   0.0  4.2e-133  2.1e-130       6     401 ..     108     527 ..     105     580 .. 0.89

  Alignments for each domain:
  == domain 1    score: 433.5 bits;  conditional E-value: 4.2e-133
   TIGR00614   6 vfglesfrpvqlevinavlegrdalvvmatGgGksLCyqlpavvsdgltlvisPLisLmeDqvlqL........kasdisatlLnsaqskeeakevladl...kdgklkllYvtPekvsksksllqkle.......erkkltliavDeahCisqWGhDfRsdykalgsLkqklP.svpviaLtatasssvreDilklLklk.kpqvtitsfdRpnlkyeveekks...kiledllkfivkefkgksGiiYClsrkkveqvaaeLqkkglaaaaYhagleesarkevqkkflrd.....eiqvvvatvafGmGinkpdvRfvihyslpksiesYYqesGRaGRDglksecvlfyapaDvallrrllveekdekkreyklkllekv.ekyensskCRRlillsyfeekqlkkasskkgteksCdnCk 401
                  fg+ sfr+ q e+i+a+l g+d++v+++tG+GksLCyqlpav+s g+++v+sPL +L++Dqv  L           +i+at+L+sa    ++++v++dl    ++  k+lYvtPe++ ++ +l + l+       +r+    ++vDeahC+s WGhDfR+dy++lg+L++kl  +vp++aLtata+++ + Di klL+l  + +++ tsf+Rpnl y+v +k +       +l+ ++ +    ++Gi+YC++r+++e++ + L + gl+ + Yhag++ ++r+++q  ++r       i +v++t+a GmGi+kpdvRfv+h+sl+k ie+YYqesGRaGRD l+sec++fy+p+D+a+l ++  ++k++k r+ + +   ++ e++e +s CRR+ lls+f e     +     ++  Cd C+
  MMETSP1137-20121227|3229_1 108 IFGHPSFREPQREAIQATLDGHDVFVLLPTGKGKSLCYQLPAVLSRGVSVVVSPLLALIQDQVRALvgmhgtdaALAGIPATYLSSAAPGGHTERVYEDLarePEPLTKVLYVTPEQLLNNARLQRALQslahaxrARRVSRXVVVDEAHCVSSWGHDFRPDYAKLGTLRAKLGiRVPMMALTATATPQCEVDIAKLLRLDpRKKMFKTSFNRPNLSYSVVRKSAdreAAFAQLVAYVGHWPARTAGIVYCMTRADAEETCDALANAGLSVGCYHAGMSAERRARMQGAWQRGgsahgGISIVCSTIAMGMGIDKPDVRFVAHFSLSKAIEGYYQESGRAGRDSLPSECLIFYSPKDFARLCNMARMHKSGKSRKREVDTARQMkEYCECTSSCRRVSLLSHFSETS-SADL----CKGKCDVCT 527
                 6**************************************************************999444433333579**********************95446679*************999877777768874444555689****************************747************************84677899****************96655677888898866667789*******************************************9852223379************************************************************************999988887777256677899************33.3444....556666665 PP

>> TIGR01389  recQ: ATP-dependent DNA helicase RecQ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  392.4   0.0  1.4e-120  7.1e-118       8     396 ..     108     530 ..     103     533 .. 0.86
   2 ?   -6.9   2.4         8   4.1e+03     342     346 ..     567     571 ..     551     587 .. 0.38

  Alignments for each domain:
  == domain 1    score: 392.4 bits;  conditional E-value: 1.4e-120
   TIGR01389   8 vFGyeeFRggqeeiieevldgrdvlavlPtGGGkslCYqvPaLllkgltvvisPLisLmkDqvdqL........raaGveaaalnstlsakeaqeilkalaage...lklLYvaPerleqd.kflellerlk........iallavDeahCvsqWGhDFRpeYkrlgelaerfp.kapvialtatadaevredivekLelkd.aaefvssfdRenlafsvvkkenkk....kqlleylkkere.ksGiiYassRkkveelaeaLeskgiealaYhaGlskkvRaeaqekFled.....dvkvvvatvaFGmGidksdvRfvihldlPknlesyyqeaGRaGRDGlkaeaillyseaDlallkrlieeseasedrkqieskkLdellayae.tkkCrrklllkyFgee.eveeC.gnCdnCldpa 396
                 +FG+ +FR+ q e i++ ldg+dv+++lPtG GkslCYq+Pa+l  g++vv+sPL++L++Dqv +L          aG+ a++l s+    +++++ + la +     k+LYv+Pe+l+++ +++++l+ l            + vDeahCvs WGhDFRp+Y++lg+l+ ++  ++p++altata+++ + di++ L+l+  ++ f++sf+R+nl++svv+k+  +     ql+ y+ +    ++Gi+Y+++R++ ee+ +aL + g++++ YhaG+s + Ra+ q ++++         +v++t+a GmGidk+dvRfv+h+ l k++e yyqe+GRaGRD l++e++++ys++D+a l ++ +  + s + ++ e    +++ +y+e t +Crr+ ll++F e+ + + C g+Cd+C+ pa
  MMETSP1137-20121227|3229_1 108 IFGHPSFREPQREAIQATLDGHDVFVLLPTGKGKSLCYQLPAVLSRGVSVVVSPLLALIQDQVRALvgmhgtdaALAGIPATYLSSAAPGGHTERVYEDLAREPeplTKVLYVTPEQLLNNaRLQRALQSLAhaxrarrvSRXVVVDEAHCVSSWGHDFRPDYAKLGTLRAKLGiRVPMMALTATATPQCEVDIAKLLRLDPrKKMFKTSFNRPNLSYSVVRKSADReaafAQLVAYVGHWPArTAGIVYCMTRADAEETCDALANAGLSVGCYHAGMSAERRARMQGAWQRGgsahgGISIVCSTIAMGMGIDKPDVRFVAHFSLSKAIEGYYQESGRAGRDSLPSECLIFYSPKDFARLCNMARMHK-SGKSRKREVDTARQMKEYCEcTSSCRRVSLLSHFSETsSADLCkGKCDVCTPPA 530
                 7***************************************************************9944433333357****************9999988765323379********9865256666765441111111134789*************************99972567**********************8615679**************997654111268999998876669********************************************997511111468**********************************************************9999888755.556666789999*******94568************9677789779****9875 PP

  == domain 2    score: -6.9 bits;  conditional E-value: 8
   TIGR01389 342 eseas 346
                 +++++
  MMETSP1137-20121227|3229_1 567 QQQQQ 571
                 00111 PP

>> TIGR04121  DEXH_lig_assoc: DEXH box helicase, DNA ligase-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.9   0.0   1.4e-15   7.3e-13      16     376 ..     116     481 ..     112     493 .. 0.73

  Alignments for each domain:
  == domain 1    score: 44.9 bits;  conditional E-value: 1.4e-15
   TIGR04121  16 afQkevleaaeegesglliapTGaGKTlavflpslielaakekpkkglkvlyitPLkaLakdieral......eapieelglei.rvelrtGDtssser..arqrkkppdiLltTpEsl.......aLllsskdaeklfkdlravvvDElHeLlgskRGdlleLaLarLrrlapel....rvvglsATvgnleeaaev.llgeekeekaklvkakekkalevesllpeeeeklPwaGhlglkaleevleeikkarttlvFtNtRsqaEllfqaLleaneelaleialhHgsldkeqRekveaalk.....agklravvcTssLdLGvDfgdvdlviqvGspkgvaRllQRiGRsnH.rldepskillvptnalEllEaaaareavkeg 376
                 + Q+e+++a+ +g++ ++  pTG GK l   lp++++         g+ v  ++PL aL +d  ral      +a+++ +  ++ + +   G t+      ar  +   ++L +TpE+l         l s ++a +  +  r vvvDE H +     G+ ++   a+L +l+ +l     +++l+AT     e+  + ll+ +   ++k+ k++ ++     s+++++ ++       + ++l + + +  + ++ +v++ tR+ aE +  aL +a     l ++ +H+ +++e R +++ a +     +g + +v +T ++ +G+D  dv  v +   +k +    Q  GR++  +l +++ i++ p +   l  +a ++++ k++
  MMETSP1137-20121227|3229_1 116 EPQREAIQATLDGHDVFVLLPTGKGKSLCYQLPAVLSR--------GVSV-VVSPLLALIQDQVRALvgmhgtDAALAGIPATYlSSAAPGGHTERVYEdlAREPEPLTKVLYVTPEQLlnnarlqRALQSLAHAXRARRVSRXVVVDEAHCVS--SWGHDFRPDYAKLGTLRAKLgirvPMMALTATATPQCEVDIAkLLRLDP--RKKMFKTSFNRPNLSYSVVRKSADR-----EAAFAQLVAYVGHWPARTAGIVYCMTRADAEETCDALANAG----LSVGCYHAGMSAERRARMQGAWQrggsaHGGISIVCSTIAMGMGIDKPDVRFVAHFSLSKAIEGYYQESGRAGRdSLPSECLIFYSPKDFARLCNMARMHKSGKSR 481
                 569*****************************998754........5665.59**********99983332223444555444314455667787654411566666779********94444332246677777777778899*******875..4677777777777766665411116799999987665554330444444..7889999999999999999997776.....4567777777888899999*************999998764....66**************999887611111568999999***********************************8613455566666666655666666565555555 PP

>> TIGR03817  DECH_helic: helicase/secretion neighborhood putative DEAH-box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.0   2.3   1.7e-11   8.7e-09      41     374 ..     118     451 ..      98     462 .. 0.75

  Alignments for each domain:
  == domain 1    score: 32.0 bits;  conditional E-value: 1.7e-11
   TIGR03817  41 qaraaelahaGehvvvatgtasGkslayllPvlsalaedpratalylaPtkalaadqlravkelee..........rdvraatydGdtpaeerewirek...aryvltnPdml.hlg.ilpsharWakfl...ralryvvvdechsyrGvfGshvalvlrrlrrlcaryGae.PvfllasatsadpaaaasrliGleveavtedgsPrgartvvlwePallelegengapvrrsasaeaa..dlladlvaegvrt..ltfvrsrrgaevvaleakerlaevdaelaervaayraGylaedrreleralkdG.....ellgvaatnalelGvdisGldavviaGfPGtvaslwqqaGraGrrg 374
                 q +a +++ +G++v v   t  Gksl+y+lP++       r +++ ++P  al +dq+ra+  ++           + + +a+  G t++   + +re    +++++  P+ l  ++ + +  +  a+     r  r vvvde+h     +G +      +l  l a+ G   P++ l+++++ + ++  ++l+ l+         Pr ++    ++ +         + vr+sa +eaa  +l+a +    +rt  +++  +r  ae     + ++la+     +  v +y aG  ae r +++ a ++G      +  v++t a+ +G+d   +  v        +  ++q +GraGr++
  MMETSP1137-20121227|3229_1 118 QREAIQATLDGHDVFVLLPTGKGKSLCYQLPAVL-----SRGVSVVVSPLLALIQDQVRALVGMHGtdaalagipaTYLSSAAPGGHTERVYEDLAREPeplTKVLYVTPEQLlNNArLQRALQSLAHAXrarRVSRXVVVDEAHCVS-SWGHDFRPDYAKLGTLRAKLGIRvPMMALTATATPQCEVDIAKLLRLD---------PRKKMFKTSFNRPN-----LSYSVVRKSADREAAfaQLVAYVGHWPARTagIVYCMTRADAEE----TCDALAN----AGLSVGCYHAGMSAERRARMQGAWQRGgsahgGISIVCSTIAMGMGIDKPDVRFVAHFSLSKAIEGYYQESGRAGRDS 451
                 78889999***********************864.....36778889***************999888888888877778888899***********96333678888887651444233444555555411045689*******875.69999999999**********874777776666677888888888765.........66665444444442.....34578999999998533888888888888822455555555554....4455655....345699**************9998764221115777999999999999887776666666777789**********97 PP

>> TIGR01407  dinG_rel: putative DnaQ family exonuclease/DinG family helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   5.9e-05      0.03     263     308 ..     127     170 ..      80     174 .. 0.85

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 5.9e-05
   TIGR01407 263 eeekslIeAatGtGKtlgYLLpalylakeekpvviStatkvLQsQl 308
                 + +++++  +tG GK+l Y Lpa+ +      vv+S    ++Q+Q+
  MMETSP1137-20121227|3229_1 127 DGHDVFVLLPTGKGKSLCYQLPAVLSRG--VSVVVSPLLALIQDQV 170
                 457899999*************987655..89****9999999996 PP

>> TIGR03158  cas3_cyano: CRISPR-associated helicase Cas3, subtype CYANO
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0    0.0001     0.054      16      62 ..     130     176 ..     118     186 .. 0.81

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 0.0001
   TIGR03158  16 vllntAptGaGKtlaalvevlseeldtialyPtNaLiedqekaikel 62 
                  ++ + ptG+GK+l   ++++     ++ + P  aLi+dq +a  ++
  MMETSP1137-20121227|3229_1 130 DVFVLLPTGKGKSLCYQLPAVLSRGVSVVVSPLLALIQDQVRALVGM 176
                 456677*********999988877789999**********9998776 PP

>> TIGR03499  FlhF: flagellar biosynthesis protein FlhF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   4.1     0.001      0.53      64     106 ..     543     585 ..     508     637 .. 0.57

  Alignments for each domain:
  == domain 1    score: 8.0 bits;  conditional E-value: 0.001
   TIGR03499  64 eeakkaleeaepkklskaeekeekekeaeekaaeaaqeaekkl 106
                 +++k++++++ p++++++++++++++++++++++++++++++ 
  MMETSP1137-20121227|3229_1 543 KARKSRARASGPAQQQQQQQQQQQQQQQQQQQQQQQRRRHQQP 585
                 2222222222222222222222222222222222211111111 PP

>> TIGR01628  PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   7.8    0.0063       3.2     399     469 ..     553     619 ..     520     720 .. 0.46

  Alignments for each domain:
  == domain 1    score: 4.6 bits;  conditional E-value: 0.0063
   TIGR01628 399 grhqaaqqqavvtqavkqqlasqplnfk.inqmmlstqnps..kpeapnalaqlaqqrlqaqgrrnlnnrnrnv 469
                 g  +a+qqq+ ++q+++qq ++q+++ + ++++++ +q p   +p  p      +   lq+q+r + +  ++++
  MMETSP1137-20121227|3229_1 553 G--PAQQQQQQQQQQQQQQQQQQQQQQQrRRHQQPRQQVPCpcAPWDPP-----SSDSLQQQQRAQGRAASSSM 619
                 2..3333333333333333333322222122223333333211222222.....22223333332222223333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (770 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       369  (0.0899561); expected 82.0 (0.02)
Passed bias filter:                      203  (0.0494881); expected 82.0 (0.02)
Passed Vit filter:                        47  (0.0114578); expected 4.1 (0.001)
Passed Fwd filter:                        10  (0.00243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.84u 0.16s 00:00:01.00 Elapsed: 00:00:00.92
# Mc/sec: 1104.69
//
Query:       MMETSP1137-20121227|3230_1  [L=71]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (71 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        50  (0.0121892); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.18s 00:00:00.31 Elapsed: 00:00:00.27
# Mc/sec: 347.08
//
Query:       MMETSP1137-20121227|3231_1  [L=437]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (437 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        96  (0.0234032); expected 82.0 (0.02)
Passed bias filter:                       31  (0.00755729); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.17s 00:00:00.47 Elapsed: 00:00:00.46
# Mc/sec: 1253.90
//
Query:       MMETSP1137-20121227|3232_1  [L=226]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (226 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        89  (0.0216967); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.17s 00:00:00.38 Elapsed: 00:00:00.41
# Mc/sec: 727.55
//
Query:       MMETSP1137-20121227|3233_1  [L=194]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.022   11.7   0.6      0.028   11.4   0.4    1.2  1  TIGR01349 PDHac_trf_mito: pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase


Domain annotation for each model (and alignments):
>> TIGR01349  PDHac_trf_mito: pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.4   6.8e-06     0.028      61     138 ..      47     122 ..      35     152 .. 0.75

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 6.8e-06
   TIGR01349  61 gtkdvpvnkliavlveekedvedavknyklessasapkpkekaeqsaeesaesakseasaekakessseaeaskkesk 138
                   +dvpvn++ a + +e+ + +d+  +   ++s+ a++++++ +  +e+s+  ++s+++   + +++s+   s+ +s+
  MMETSP1137-20121227|3233_1  47 LLEDVPVNEVYAACFDEDFELDDIEDEEMSDESSDAAESTANTP-LPEQSER-TSSASTLSDTSSEASNESLSDGTSD 122
                 5689*************999999998888888877777777777.4444444.5555555555666666655555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (194 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        89  (0.0216967); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.21u 0.15s 00:00:00.36 Elapsed: 00:00:00.78
# Mc/sec: 328.28
//
Query:       MMETSP1137-20121227|3235_1  [L=900]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (900 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       113  (0.0275475); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.53u 0.14s 00:00:00.67 Elapsed: 00:00:00.72
# Mc/sec: 1649.86
//
Query:       MMETSP1137-20121227|3236_1  [L=511]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.8e-09   32.4   0.1    1.6e-08   31.3   0.0    1.4  2  TIGR02938 nifL_nitrog: nitrogen fixation negative regulator NifL
    8.2e-06   23.8   0.0    1.6e-05   22.8   0.0    1.4  1  TIGR00229 sensory_box: PAS domain S-box protein


Domain annotation for each model (and alignments):
>> TIGR02938  nifL_nitrog: nitrogen fixation negative regulator NifL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.0      0.31   6.3e+02     206     250 ..     103     147 ..      93     166 .. 0.72
   2 !   31.3   0.0   7.8e-12   1.6e-08      24     108 ..     366     449 ..     348     458 .. 0.91

  Alignments for each domain:
  == domain 1    score: -3.6 bits;  conditional E-value: 0.31
   TIGR02938 206 rgggrsarwlsvagrvirieeesadsffaaaekryllltiddise 250
                  ++ +++rw     +  ++e+  +   f ++e r  l ++ + + 
  MMETSP1137-20121227|3236_1 103 ATAAKAPRWQVSPEQQAQLEKTYTTNRFPTSEARKQLAAVLNATP 147
                 456688899888888888888888888888888777766655554 PP

  == domain 2    score: 31.3 bits;  conditional E-value: 7.8e-12
   TIGR02938  24 anilyanaafseitGyakeeviGknesvlsnrttPpevyqalwgslaekkPwaGkllnrrkdgelylaeltvaPvlneaGetthf 108
                  n++y+ + ++e+ Gy+++e +Gk   +l    t p    +l  ++ ++ P   +l+n  k+g+ +  +l v P+ +++G+   f
  MMETSP1137-20121227|3236_1 366 YNVIYVSDGWKEVCGYGSDEAVGKTLKLLQGPXTDPAAIADLMTAVDQHVPXMVELINYAKNGRAFSHKLHVEPLRDASGTV-QF 449
                 59*************************************************************************9999965.44 PP

>> TIGR00229  sensory_box: PAS domain S-box protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.8   0.0     8e-09   1.6e-05      26     111 ..     367     452 ..     346     459 .. 0.79

  Alignments for each domain:
  == domain 1    score: 22.8 bits;  conditional E-value: 8e-09
   TIGR00229  26 nilyvNrafeeifGYsaeeliGrnvle.lipeedreevrerierrlegerepvseerrvkrkdGseiwvevsvspird.aggelgvvg 111
                 n++yv++ ++e+ GY ++e++G+++     p  d  +++ ++    +   + + e  ++  k+G+ +  +++v p+rd +g++ + ++
  MMETSP1137-20121227|3236_1 367 NVIYVSDGWKEVCGYGSDEAVGKTLKLlQGPXTDPAAIADLMTAVDQ-HVPXMVELINY-AKNGRAFSHKLHVEPLRDaSGTVQFLQA 452
                 799***********************955555666666666666665.55555555555.******************9988887766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (511 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       137  (0.0333983); expected 82.0 (0.02)
Passed bias filter:                      103  (0.0251097); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.36u 0.16s 00:00:00.52 Elapsed: 00:00:00.64
# Mc/sec: 1053.85
//
Query:       MMETSP1137-20121227|3237_1  [L=287]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (287 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        63  (0.0153584); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.14s 00:00:00.35 Elapsed: 00:00:00.35
# Mc/sec: 1082.31
//
Query:       MMETSP1137-20121227|3238_1  [L=197]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (197 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        37  (0.00901999); expected 82.0 (0.02)
Passed bias filter:                       36  (0.00877621); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.13s 00:00:00.31 Elapsed: 00:00:00.50
# Mc/sec: 520.04
//
Query:       MMETSP1137-20121227|3239_1  [L=383]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.2e-67  224.0   0.0    5.2e-67  223.7   0.0    1.1  1  TIGR00191 thrB: homoserine kinase
    1.2e-11   42.3   0.0    3.4e-10   37.5   0.0    2.2  1  TIGR01920 Shik_kin_archae: shikimate kinase
    2.3e-07   28.4   0.0      3e-06   24.8   0.0    2.1  2  TIGR00549 mevalon_kin: mevalonate kinase


Domain annotation for each model (and alignments):
>> TIGR00191  thrB: homoserine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  223.7   0.0   3.8e-70   5.2e-67       2     267 ..      62     324 ..      61     357 .. 0.89

  Alignments for each domain:
  == domain 1    score: 223.7 bits;  conditional E-value: 3.8e-70
   TIGR00191   2 kvkvPassANlgpGfDvlGlalslvlellvtedvaqeskdksleaegegvekipkesdkNliyqvakkvlkklgkrvkpvkltvekeiplgrGLGSSaaaivaa.viaanelaglkl....skeelldlalllEgHpDNvapallGGlqlavkeddllevlkvPsgsklkvvlviPnievsTaeaRavLPkaysrqdlvfnlshlavlvtAlvskdkadllaiamkDrvhqpyRekliPelteikqaakekgalgitlSGaGptilalaee 267
                  +kvPas+ANlgpGfD++G al   ++++v+      s++ s+++ geg+++i ++ ++Nl+ ++ kk l++lg+ ++ +++   + +p +rG+GSS+aa vaa ++a+ ++ g++l    +k+ ll+la  +EgH+DNvapa+ GG+q+a+ ++ + ++++v + + l++vl iP  e+ T eaRa LP+  +r+d++fn s++a+lv+ + +  + d l++am+D +hqpyR+++ P ++ i + a e+ga g  lSGaGpt+la++  
  MMETSP1137-20121227|3239_1  62 VLKVPASTANLGPGFDSMGFALDVWNRVVVQR-----SDKFSMTISGEGADRIELT-EDNLVARMTKKALESLGQPMPTLHFDCYNAVPPTRGMGSSSAALVAAgLAAGLAFGGKDLtspaTKKLLLQLAANEEGHADNVAPAIYGGFQIAICNEGNWITQRVSIPDGLQCVLFIPDDEMPTSEARACLPELIPRKDAIFNISRAAMLVNCFATS-QFDPLRMAMEDALHQPYRTHMFP-FEPIIKDALEAGAHGAFLSGAGPTVLAITGG 324
                 579**************************999.....444469************9.***************************************999887652677777777766222257889***************************99955555555559**********************************************99.***********************.8999999********************9865 PP

>> TIGR01920  Shik_kin_archae: shikimate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.5   0.0   2.5e-13   3.4e-10      19     246 ..      81     322 ..      72     344 .. 0.73

  Alignments for each domain:
  == domain 1    score: 37.5 bits;  conditional E-value: 2.5e-13
   TIGR01920  19 fgidLkveakvrlsd.geakvslkvreeeel.dpelierilealieklgike.gleveveseiPagsGLksSsAlvnAl.vlavlkakgeeiddieilrlgaelskeagvsvTGAfDDaaasllggivlt.dNrkmkilkrdkleee.tavvlvpkeeekeeevd..lnelrkiskvveeavklAlkGeylk.........Am..vlngvlyataLgyplepaekalekGAavaglsGkGPsyvalt 246
                 f++d++  + v+ sd  +  +s++ ++  el + +l+ r+ ++++e lg    +l+++    +P+  G+ sSsA+++A   +a l   g+++ +    +l  +l+ ++     G  D  a +++gg+ ++  N    i +r  +++  + v+++p  e ++ e++  l el  +++ + ++ ++A+  + +          Am  +l   +  +++ +++ ++++ale+GA  a lsG GP ++a+t
  MMETSP1137-20121227|3239_1  81 FALDVWNRVVVQRSDkFSMTISGEGADRIELtEDNLVARMTKKALESLGQPMpTLHFDCYNAVPPTRGMGSSSAALVAAgLAAGLAFGGKDLTSPATKKLLLQLAANEE----GHADNVAPAIYGGFQIAiCNEGNWITQRVSIPDGlQCVLFIPDDEMPTSEARacLPELIPRKDAIFNISRAAMLVNCFAtsqfdplrmAMedALHQPYRTHMFPFEP-IIKDALEAGAHGAFLSGAGPTVLAIT 322
                 8999999999999996666677766665543256899999999999999875379***************999876655166667777799988888889999888875....999***********9984599999*******998799999**99776654441133444444444444444444333331111111113322233444556777777.8899********************98 PP

>> TIGR00549  mevalon_kin: mevalonate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.8   0.0   2.2e-09     3e-06      22     130 ..      81     189 ..      75     200 .. 0.75
   2 ?    1.2   0.0     0.033        45     248     268 ..     295     315 ..     292     322 .. 0.92

  Alignments for each domain:
  == domain 1    score: 24.8 bits;  conditional E-value: 2.2e-09
   TIGR00549  22 aaiealttvtvieeskeislieselgrkslakvsqelskllesyiaavlskleekkeaalkveieseipigaGLGSS.Aavavaliaalaalfg....selskeelaklaneaE 130
                 +a++   +v+v+  s+++s++   +  ++ ++++ + ++l+++++ ++l+ l++  ++ l+++    +p+ +G+GSS Aa+++a +aa +a+ g    s+++k++l +la + E
  MMETSP1137-20121227|3239_1  81 FALDVWNRVVVQR-SDKFSMT---ISGEGADRIELTEDNLVARMTKKALESLGQPMPT-LHFDCYNAVPPTRGMGSSsAALVAAGLAAGLAFGGkdltSPATKKLLLQLAANEE 189
                 5666666777766.6664444...44555555556666666678999**********9.****************752778888888888888877777788888888888777 PP

  == domain 2    score: 1.2 bits;  conditional E-value: 0.033
   TIGR00549 248 eqlvelarkagalgaKlTGaG 268
                 e +++ a++aga ga l+GaG
  MMETSP1137-20121227|3239_1 295 EPIIKDALEAGAHGAFLSGAG 315
                 679999**************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (383 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        98  (0.0238908); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.32u 0.17s 00:00:00.49 Elapsed: 00:00:00.36
# Mc/sec: 1404.22
//
Query:       MMETSP1137-20121227|3241_1  [L=493]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.3e-21   75.2   0.0    3.9e-21   73.7   0.0    1.7  1  TIGR02250 FCP1_euk: FCP1-like phosphatase, phosphatase domain
    7.4e-13   46.4   0.0    1.5e-12   45.5   0.0    1.5  1  TIGR02251 HIF-SF_euk: dullard-like phosphatase domain


Domain annotation for each model (and alignments):
>> TIGR02250  FCP1_euk: FCP1-like phosphatase, phosphatase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.7   0.0   1.9e-24   3.9e-21       5     156 .]     108     255 ..     105     255 .. 0.82

  Alignments for each domain:
  == domain 1    score: 73.7 bits;  conditional E-value: 1.9e-24
   TIGR02250   5 kkLvLvlDlDqtlihttkeselseeekkkkeekeseklkdlkkfkleekleylvklRPfvkeflkkvsklyelhvytmgtraYakeiakllDPekklFgdrilsrdest.saktKsLkkllpadesavviiDdredvWkksk..nLikverykyF 156
                  kL ++lD+D+tl+h+ + +  ++      +       + +  +    + +y+v++R +v+ fl++++k+ ++hv+tm++ +Y+k +++ +DP ++l g +++ r + + +  tKs + + + d +++v +Ddre+ W+  +   +i++  ++yF
  MMETSP1137-20121227|3241_1 108 SKLNVILDIDHTLLHACEAPLGQSLAP---D-GV---HQFILPMPKGVTSRYWVRFREGVHAFLHEIAKFATVHVFTMASVTYTKYVLDQMDPAGTLIGGQVVCRADGKtEVFTKSATLVGGLDLNSIVAVDDREEAWDPLSreLVIQLPAFRYF 255
                 69**************99988777644...2.22...22344444444789******************************************************99762566788555556999*************97665345799999998 PP

>> TIGR02251  HIF-SF_euk: dullard-like phosphatase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.5   0.0   7.1e-16   1.5e-12       2     139 ..     110     252 ..     109     285 .. 0.77

  Alignments for each domain:
  == domain 1    score: 45.5 bits;  conditional E-value: 7.1e-16
   TIGR02251   2 ktlvLDLDeTLvhs......slkkakaieadlklevliekkiilvyVlkRPyvdeFlerlsklyelvvfTasleeYadkvldildakkkvlsrrl.yRescvetngkyvKdlslvkk.dlskvviiDnsplsys.lqpeNaipiksf 139
                   ++LD+D TL+h+      +  ++    ++++l+++    + ++ V+ R +v+ Fl++++k++ + vfT +  +Y++ vld++d+   ++  +   R +   +++ ++K+ +lv+  dl+++v +D+   ++  l  e  i++ +f
  MMETSP1137-20121227|3241_1 110 LNVILDIDHTLLHAceaplgQSLAP-DGVHQFILPMPKG-VTSRYWVRFREGVHAFLHEIAKFATVHVFTMASVTYTKYVLDQMDPAGTLIGGQVvCRADG--KTEVFTKSATLVGGlDLNSIVAVDDREEAWDpLSRELVIQLPAF 252
                 679**********987765322222.4677888888766.788999******************************************9998765145443..4567********988**********9887752344445555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (493 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       108  (0.0263286); expected 82.0 (0.02)
Passed bias filter:                       96  (0.0234032); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.36u 0.16s 00:00:00.52 Elapsed: 00:00:00.53
# Mc/sec: 1227.75
//
Query:       MMETSP1137-20121227|3242_1  [L=194]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.3e-08   32.3   0.0      7e-07   26.6   0.0    2.0  2  TIGR01628 PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family
    1.5e-08   31.4   0.0    5.4e-06   23.0   0.0    2.2  2  TIGR01642 U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor
    4.3e-07   27.1   0.0    1.4e-06   25.5   0.0    1.7  2  TIGR01622 SF-CC1: splicing factor, CC1-like family
      1e-05   23.2   0.0     0.0027   15.1   0.0    2.9  3  TIGR01661 ELAV_HUD_SF: ELAV/HuD family splicing factor
     0.0001   19.9   0.1     0.0016   16.0   0.0    2.1  2  TIGR01659 sex-lethal: sex-lethal family splicing factor
    0.00039   17.3   0.0     0.0023   14.8   0.0    1.9  2  TIGR01649 hnRNP-L_PTB: hnRNP-L/PTB/hephaestus splicing factor family
     0.0097   12.5   0.1      0.036   10.7   0.0    1.8  2  TIGR01648 hnRNP-R-Q: hnRNP-R, Q splicing factor family
  ------ inclusion threshold ------
      0.015   11.8   0.0      0.021   11.4   0.0    1.1  1  TIGR01645 half-pint: poly-U binding splicing factor, half-pint family


Domain annotation for each model (and alignments):
>> TIGR01628  PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.6   0.0   1.4e-09     7e-07     288     361 ..       5      74 ..       2      83 .. 0.46
   2 ?    3.8   0.0     0.011       5.4      94     245 ..     122     177 ..     111     187 .. 0.44

  Alignments for each domain:
  == domain 1    score: 26.6 bits;  conditional E-value: 1.4e-09
   TIGR01628 288 lYvkNlddtvddekLrelFeefGeitSakvmldekekSkgFGFVcfssqeeAnkAvtelhgkilngkPLyvalA 361
                 lY  Nld ++++++L ++ ++fG + S+ v +++     gF FV + +  +A + v+ l+ + l+ + + v +A
  MMETSP1137-20121227|3242_1   5 LYFGNLDVNITQQDLEDECKRFGRTASVWVARSP----PGFAFVEYEDIRDAEDCVRGLNDTRLGAQRVRVEFA 74 
                 4444444444444444444444444444444443....344444444444444444444444444444444444 PP

  == domain 2    score: 3.8 bits;  conditional E-value: 0.011
   TIGR01628  94 KnLdksidnkaLfdtFskfGnilsckvatdeeGkSkgYgfvhfedeesAkeAieklNgvllndkevyvgkfikksereatkekkftNlYvKnlddsvtedklrelFakfGeitSaivkkdeknrkrgfafvnyekaedAkkAveelngkkit 245
                 +n                                                                                          l+ s + ++l++   + G+++ a v +  ++     + v++++ +d + Av +l+g k++
  MMETSP1137-20121227|3242_1 122 QN------------------------------------------------------------------------------------------LPSSFSWKELKDEMRRIGDVIYADVDN--HGD----GVVEFATLDDLEYAVRKLDGSKLD 177
                 33..........................................................................................333334444444444444433333321..111....234444444444444444444444 PP

>> TIGR01642  U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.0   0.0   1.1e-08   5.4e-06     296     379 ..       2      80 ..       1      86 [. 0.89
   2 !    6.5   0.0    0.0011      0.54     292     370 ..     112     183 ..     102     189 .. 0.83

  Alignments for each domain:
  == domain 1    score: 23.0 bits;  conditional E-value: 1.1e-08
   TIGR01642 296 edklyignLPldlkddqvkeLLesFGdLkaFnliKdlatGlsKGyaFceykdssvtdlAiaaLnGiklgdkkLnvkrAtvgakq 379
                  ++ly gnL  +++++ + +  + FG   +  + +     +  G+aF+ey+d+ +++  + +Ln  +lg +++ v +A    k+
  MMETSP1137-20121227|3242_1   2 THRLYFGNLDVNITQQDLEDECKRFGRTASVWVAR-----SPPGFAFVEYEDIRDAEDCVRGLNDTRLGAQRVRVEFARNKGKN 80 
                 58************************999987765.....568**********************************9764444 PP

  == domain 2    score: 6.5 bits;  conditional E-value: 0.0011
   TIGR01642 292 vldsedklyignLPldlkddqvkeLLesFGdLkaFnliKdlatGlsKGyaFceykdssvtdlAiaaLnGiklgdkkLnv 370
                 +   +++  ++nLP  +  + +k+ ++  Gd+         a+  + G + +e+    + + A+  L+G kl ++ ++v
  MMETSP1137-20121227|3242_1 112 GRGTKHRAILQNLPSSFSWKELKDEMRRIGDVI-------YADVDNHGDGVVEFATLDDLEYAVRKLDGSKLDGNVVTV 183
                 556788999999999999999999999999974.......456678888899999999999999999999999999887 PP

>> TIGR01622  SF-CC1: splicing factor, CC1-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.5   0.0   2.6e-09   1.4e-06     219     299 ..       2      77 ..       1      86 [. 0.92
   2 ?   -1.0   0.0      0.27   1.4e+02     162     188 ..     152     179 ..     121     186 .. 0.55

  Alignments for each domain:
  == domain 1    score: 25.5 bits;  conditional E-value: 2.6e-09
   TIGR01622 219 dlkLYvGnlhfnitEqeLrqiFepFGeielvqlqkDpetGrskGyGFiqFsdaeeakeAleklNGlelAGReikvglasDv 299
                 +++LY Gnl  nit q+L +  + FG+  +v + + p +     + F++++d   a +    lN   l    ++v +a++ 
  MMETSP1137-20121227|3242_1   2 THRLYFGNLDVNITQQDLEDECKRFGRTASVWVARSPPG-----FAFVEYEDIRDAEDCVRGLNDTRLGAQRVRVEFARNK 77 
                 59********************************99876.....************************9999*99987764 PP

  == domain 2    score: -1.0 bits;  conditional E-value: 0.27
   TIGR01622 162 GvaYvEFydvesvqlAl.altGqkllgv 188
                 G + vEF + +  + A+ +l G kl g 
  MMETSP1137-20121227|3242_1 152 GDGVVEFATLDDLEYAVrKLDGSKLDGN 179
                 2233444444444444322344444433 PP

>> TIGR01661  ELAV_HUD_SF: ELAV/HuD family splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.0     0.069        36      92     116 ..       5      29 ..       2      36 .. 0.88
   2 !   15.1   0.0   5.4e-06    0.0027      46      82 ..      40      76 ..      33      82 .. 0.92
   3 ?    2.8   0.0     0.031        16     131     158 ..     151     178 ..     116     190 .. 0.54

  Alignments for each domain:
  == domain 1    score: 1.6 bits;  conditional E-value: 0.069
   TIGR01661  92 lyvsGlPktmtqkeleslfspfGki 116
                 ly   l  ++tq++le   ++fG+ 
  MMETSP1137-20121227|3242_1   5 LYFGNLDVNITQQDLEDECKRFGRT 29 
                 89999999*************9985 PP

  == domain 2    score: 15.1 bits;  conditional E-value: 5.4e-06
   TIGR01661 46 GyGfvnyvreedaekavnslnGlrlqnktikvsyarP 82
                G+ fv+y + +dae  v  ln  rl ++ ++v +ar 
  MMETSP1137-20121227|3242_1 40 GFAFVEYEDIRDAEDCVRGLNDTRLGAQRVRVEFARN 76
                899********************************96 PP

  == domain 3    score: 2.8 bits;  conditional E-value: 0.031
   TIGR01661 131 kGvGfirfdkreeadraikalnGttPsg 158
                 +G G + f   ++ + a+++l+G++  g
  MMETSP1137-20121227|3242_1 151 HGDGVVEFATLDDLEYAVRKLDGSKLDG 178
                 3444444444444444444444444333 PP

>> TIGR01659  sex-lethal: sex-lethal family splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0   3.1e-06    0.0016     196     304 ..       5     106 ..       2     124 .. 0.79
   2 ?    2.8   0.0     0.031        16     108     188 ..     117     190 ..     102     192 .. 0.75

  Alignments for each domain:
  == domain 1    score: 16.0 bits;  conditional E-value: 3.1e-06
   TIGR01659 196 lyvtnlprtitddqldtifgkygsivqknilrdkltgkprgvafvrfnkreeaqeaisalnnvipeggsqpltvrlaeehgkakaahymsklglikygeygtgnggvag 304
                 ly  nl   it+++l+    ++g+     + r      p g afv ++   +a++ +  ln+     g+q + v +a ++gk  a       g  ++g+yg+  ++  g
  MMETSP1137-20121227|3242_1   5 LYFGNLDVNITQQDLEDECKRFGRTASVWVAR-----SPPGFAFVEYEDIRDAEDCVRGLNDT--RLGAQRVRVEFARNKGKNSAPPSGGYGGGRDGGGYGGPPSSHRG 106
                 89999999999999999999999998887776.....6999********99*********996..56889999999999999998876666666666666665444444 PP

  == domain 2    score: 2.8 bits;  conditional E-value: 0.031
   TIGR01659 108 tnlivnylpqdmtdrelyalfrtigpintcrimrdyktgysfgyafvdfaseadsqraikslngitvrnkrlkvsyarpgg 188
                    i++ lp  ++ +el   +r ig +        y     +g + v+fa+  d   a+++l+g  +    + v    pgg
  MMETSP1137-20121227|3242_1 117 HRAILQNLPSSFSWKELKDEMRRIGDVI-------YADVDNHGDGVVEFATLDDLEYAVRKLDGSKLDGNVVTVFKENPGG 190
                 4556777777777778877777777763.......3344578999*******************99998888888888887 PP

>> TIGR01649  hnRNP-L_PTB: hnRNP-L/PTB/hephaestus splicing factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   4.5e-06    0.0023       9      71 ..       9      70 ..       5      80 .. 0.81
   2 ?    0.1   0.0      0.13        65     336     368 ..     151     183 ..     142     187 .. 0.88

  Alignments for each domain:
  == domain 1    score: 14.8 bits;  conditional E-value: 4.5e-06
   TIGR01649  9 nlpeevveadlvelliefGkvsyvlvlkgk.rqAlvEfedeesAkalVnfatsvpiqirGrtvf 71
                nl  ++++ dl + +++fG+ + v v +     A+vE+ed+  A+++V    ++   ++ + v 
  MMETSP1137-20121227|3242_1  9 NLDVNITQQDLEDECKRFGRTASVWVARSPpGFAFVEYEDIRDAEDCVRGLNDTR--LGAQRVR 70
                67788999****************999875268***************9887664..4555555 PP

  == domain 2    score: 0.1 bits;  conditional E-value: 0.13
   TIGR01649 336 ketalvemadpqqaqlalthLdkvklfgkklrv 368
                 ++ ++ve+a+ ++ + a+  Ld++kl g+ + v
  MMETSP1137-20121227|3242_1 151 HGDGVVEFATLDDLEYAVRKLDGSKLDGNVVTV 183
                 56799*********************9998877 PP

>> TIGR01648  hnRNP-R-Q: hnRNP-R, Q splicing factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.7   0.0     7e-05     0.036     236     311 ..       5      81 ..       2      98 .. 0.76
   2 ?   -0.7   0.0       0.2     1e+02     274     301 ..     156     183 ..     120     189 .. 0.82

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 7e-05
   TIGR01648 236 lyvrnlmletteeiieksfsefkpGavervkkir...dyafvhfedredavkamdelnGkeleGseievtlakPvdkes 311
                 ly  nl +++t++ +e + ++f  G    v   r    +afv +ed  da + +  ln + l  + + v +a+   k+s
  MMETSP1137-20121227|3242_1   5 LYFGNLDVNITQQDLEDECKRF--GRTASVWVARsppGFAFVEYEDIRDAEDCVRGLNDTRLGAQRVRVEFARNKGKNS 81 
                 7888999999999999888888..5544444444222699999999999999999999999999999999998887774 PP

  == domain 2    score: -0.7 bits;  conditional E-value: 0.2
   TIGR01648 274 vhfedredavkamdelnGkeleGseiev 301
                 v f   +d   a+ +l+G +l+G+ + v
  MMETSP1137-20121227|3242_1 156 VEFATLDDLEYAVRKLDGSKLDGNVVTV 183
                 6777777777888899999999988877 PP

>> TIGR01645  half-pint: poly-U binding splicing factor, half-pint family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   4.1e-05     0.021     214     274 ..      16      71 ..       7      86 .. 0.80

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 4.1e-05
   TIGR01645 214 eedlksvfeafGeivkcklaraptlrkhkGfGflefenlqsqseaiasmnlfdlGGqllrv 274
                 ++dl      fG+  +  +ar+p      Gf f+e+e+ +  ++ + ++n   lG q +rv
  MMETSP1137-20121227|3242_1  16 QQDLEDECKRFGRTASVWVARSP-----PGFAFVEYEDIRDAEDCVRGLNDTRLGAQRVRV 71 
                 56666666677777777777776.....59***************************9999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (194 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        92  (0.0224281); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         8  (0.00195027); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.28u 0.18s 00:00:00.46 Elapsed: 00:00:00.80
# Mc/sec: 320.07
//
Query:       MMETSP1137-20121227|3243_1  [L=374]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (374 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        67  (0.0163335); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.15s 00:00:00.44 Elapsed: 00:00:00.35
# Mc/sec: 1410.40
//
Query:       MMETSP1137-20121227|3245_1  [L=384]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (384 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        49  (0.0119454); expected 82.0 (0.02)
Passed bias filter:                       40  (0.00975134); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.16s 00:00:00.42 Elapsed: 00:00:00.38
# Mc/sec: 1333.78
//
Query:       MMETSP1137-20121227|3246_1  [L=80]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.8e-12   43.7   1.8    1.2e-10   38.7   0.2    2.0  2  TIGR00836 amt: ammonium transporter
     0.0098   12.5   0.3      0.014   12.0   0.1    1.4  2  TIGR03644 marine_trans_1: probable ammonium transporter, marine subtype


Domain annotation for each model (and alignments):
>> TIGR00836  amt: ammonium transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.7   0.2     6e-14   1.2e-10     307     336 ..       2      31 ..       1      42 [. 0.90
   2 !    5.0   0.0     0.001       2.1     387     406 .]      43      62 ..      41      62 .. 0.92

  Alignments for each domain:
  == domain 1    score: 38.7 bits;  conditional E-value: 6e-14
   TIGR00836 307 DDpldvfavHgvaGiwGlilvglfaaekvv 336
                 DDpld+favHgv+G+wG++++glf+++++ 
  MMETSP1137-20121227|3246_1   2 DDPLDAFAVHGVGGLWGMLATGLFGDPDYT 31 
                 ***************************987 PP

  == domain 2    score: 5.0 bits;  conditional E-value: 0.001
   TIGR00836 387 vseeeEklGlDlaehgesay 406
                 vs++ E +G+D+++hg   y
  MMETSP1137-20121227|3246_1  43 VSNDVEDAGMDVSKHGGAMY 62 
                 899*************8876 PP

>> TIGR03644  marine_trans_1: probable ammonium transporter, marine subtype
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.0   0.1   6.9e-06     0.014     320     342 ..       2      24 ..       1      40 [. 0.87
   2 ?   -2.2   0.0      0.14   2.9e+02     382     401 ..      43      62 ..      33      64 .. 0.77

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 6.9e-06
   TIGR03644 320 ddpvGaisvhgvaGifGllvvpl 342
                 ddp+ a +vhgv G++G+l+  l
  MMETSP1137-20121227|3246_1   2 DDPLDAFAVHGVGGLWGMLATGL 24 
                 9******************9765 PP

  == domain 2    score: -2.2 bits;  conditional E-value: 0.14
   TIGR03644 382 vseeeeleGldlaelGleay 401
                 vs++ e  G+d+++ G   y
  MMETSP1137-20121227|3246_1  43 VSNDVEDAGMDVSKHGGAMY 62 
                 67888888888888876655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (80 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        67  (0.0163335); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.16u 0.13s 00:00:00.29 Elapsed: 00:00:00.28
# Mc/sec: 377.11
//
Query:       MMETSP1137-20121227|3248_1  [L=1010]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1010 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       208  (0.050707); expected 82.0 (0.02)
Passed bias filter:                      127  (0.0309605); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.68u 0.16s 00:00:00.84 Elapsed: 00:00:00.71
# Mc/sec: 1877.59
//
Query:       MMETSP1137-20121227|3249_1  [L=730]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.8e-35  118.7   0.2    3.5e-17   60.1   0.2    2.9  2  TIGR01733 AA-adenyl-dom: amino acid adenylation domain
    5.3e-28   95.6   0.0    2.8e-19   66.8   0.0    2.3  2  TIGR03098 ligase_PEP_1: acyl-CoA ligase (AMP-forming), exosortase A-associated
    7.5e-25   85.5   0.0    1.1e-12   45.3   0.0    2.6  2  TIGR01923 menE: O-succinylbenzoate-CoA ligase
    3.7e-19   66.4   1.4    1.3e-09   34.8   0.0    2.3  2  TIGR03205 pimA: dicarboxylate--CoA ligase PimA
    8.6e-17   58.9   0.2    4.9e-08   29.9   0.0    2.5  2  TIGR03208 cyc_hxne_CoA_lg: cyclohexanecarboxylate-CoA ligase
    1.5e-16   58.0   0.0    9.6e-13   45.5   0.1    3.1  2  TIGR02262 benz_CoA_lig: benzoate-CoA ligase family
    1.6e-14   51.2   0.0    2.5e-06   24.2   0.0    2.9  3  TIGR01734 D-ala-DACP-lig: D-alanine--poly(phosphoribitol) ligase, subunit 1
    3.6e-14   49.7   0.0    7.7e-12   42.1   0.1    2.2  2  TIGR02188 Ac_CoA_lig_AcsA: acetate--CoA ligase
    1.8e-10   37.5   0.0     0.0002   17.6   0.0    3.1  2  TIGR02275 DHB_AMP_lig: (2,3-dihydroxybenzoyl)adenylate synthase
    2.6e-09   34.1   0.1    4.9e-09   33.2   0.1    1.4  1  TIGR02316 propion_prpE: propionate--CoA ligase
    7.4e-08   28.0   0.0     0.0012   14.1   0.0    2.1  2  TIGR03443 alpha_am_amid: L-aminoadipate-semialdehyde dehydrogenase
    1.5e-05   21.2   0.1    4.4e-05   19.6   0.1    1.7  2  TIGR01217 ac_ac_CoA_syn: acetoacetate-CoA ligase


Domain annotation for each model (and alignments):
>> TIGR01733  AA-adenyl-dom: amino acid adenylation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.1   0.2     1e-19   3.5e-17       1     158 [.     111     306 ..     111     328 .. 0.85
   2 !   54.0   0.0   7.3e-18   2.5e-15     251     405 ..     457     620 ..     433     623 .. 0.75

  Alignments for each domain:
  == domain 1    score: 60.1 bits;  conditional E-value: 1e-19
   TIGR01733   1 tYreLderanrlAraLkeaggvrpgdrVavllersvelvvailavlkaGaayvpldpeyPaeRlaailedakakllltdeelaeelaeval...........eailleeleekaaedasaeeaaeak...........................skpddlayviyTSGStGkPKgVlvehrslvnllaslarryel 158
                 ++reL  +  +l++ + + +g+++gd V++++e + e ++a la +    + v + ++   e la+ ++++kakl+++d++l +++a++++            + ++++++++++++++  ++a+++                           +kpdd+a ++yTSG+tG PKgV++ h+s+v+  + l++r ++
  MMETSP1137-20121227|3249_1 111 SFRELGSAFHNLGAGMVSFAGLKAGDSVVIYAETQREWMIACLAAFSQSLVVVTVYATLGGEGLAHGVKQTKAKLIIADAKLLPKVAAAVRqygkqmskcthVISIPDPVQTADSKNEAVGKTARQElsqagwasmtfqeaqakgaasslspvpPKPDDTAVIMYTSGTTGLPKGVVIAHKSIVACSEGLEDRMKT 306
                 6899999999**999999999************************************************************999999888789999999664333344444444444444444444488899999999999************999*****************************99999885544 PP

  == domain 2    score: 54.0 bits;  conditional E-value: 7.3e-18
   TIGR01733 251 lverlraraeevrlinlYGpTEttvvvtveevsadeeseeepvpiGrplanvrlyvldea.........lrpvpvgvvGELyigGagvarGYlnrpeltaerFvedpfaksege....rlYrTGDlvrlradGeleflGRaDdqvKi.rGfRielgEieaalaelpgve 405
                 +v+ + ++a ++ + ++YG TEt+ +++v+    d+++      +G p + + + + d +         ++p      GE +igG+ v +GYl +p+   +  v+++ ++ +      r+++TGD++++++dG+l+++ R+ d vK+ +G  + l+ +e+al+++p ve
  MMETSP1137-20121227|3249_1 457 KVQVFVQTAFNAPVRQGYGLTETCAATCVQM-GCDNTTG----AVGPPTPSACIKLKDWEegnyknadlHNPEVGMRRGEVLIGGPLVCSGYLVDPDDPDADVVQKNKEEFSVDekgvRWFHTGDIGQFTPDGNLQIIDRKKDLVKLqQGEYVALSKVENALKACPLVE 620
                 555555555678999********99887654.3333334....467777766666665443333322322333334579*******************99999988766544334567****************************955****************9997 PP

>> TIGR03098  ligase_PEP_1: acyl-CoA ligase (AMP-forming), exosortase A-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.8   0.0     8e-22   2.8e-19      24     205 ..     108     310 ..      85     344 .. 0.77
   2 !   26.4   0.0   1.4e-09   4.9e-07     299     446 ..     464     621 ..     443     642 .. 0.74

  Alignments for each domain:
  == domain 1    score: 66.8 bits;  conditional E-value: 8e-22
   TIGR03098  24 rtltyaaLseevkalasglka.lglkrgeRvaiylekrletvlalfaaslaggvfvpinPlLkaeqvayilkDcnvkllvtskerldaledal....akchdlrtlilvdepekasekka..............gaevlsweklkaleeaa..akvdvidddlaailYtsGstGrPkgvvlshrnlvaGaksvaqyLelredD 205
                   +++ +L  + ++l +g+ +  glk g+ v iy+e + e ++a +aa   + v v +   L  e +a+ +k +++kl+++ ++ l ++  a     +++++ +++i + +p ++  +k+              g  ++++++++a++ a   ++v+  +dd a i+YtsG tG Pkgvv++h+ +va ++    +++  + D
  MMETSP1137-20121227|3249_1 108 SWISFRELGSAFHNLGAGMVSfAGLKAGDSVVIYAETQREWMIACLAAFSQSLVVVTVYATLGGEGLAHGVKQTKAKLIIADAKLLPKVAAAVrqygKQMSKCTHVISIPDPVQTADSKNeavgktarqelsqaGWASMTFQEAQAKGAASslSPVPPKPDDTAVIMYTSGTTGLPKGVVIAHKSIVACSEGLEDRMKTFSGD 310
                 467888888888888776655269************************************************************9977665541111566778899999887765544332344334442222234455555555555555556777889****************************999998888877766 PP

  == domain 2    score: 26.4 bits;  conditional E-value: 1.4e-09
   TIGR03098 299 llpeaklylmYGLteafRstyLdPeevdrrPdsiGkaipnaevlvlr.edGsecape....e....eGelvhrGalvakGYWndpekt.aerfrplpkrqselkltelavfsGDlvrrDeeGflyfvgRrdemikt.sGyRvsPteveevllatglvae 446
                 ++ +a +   YGLte   +t ++    d+  +++G   p a +     e+G+  +++    e     Ge+   G+lv  GY  dp+   a + +++ ++ s  ++  +  + GD+++   +G l ++ R+ +++k   G  v+   ve++l a +lv+ 
  MMETSP1137-20121227|3249_1 464 TAFNAPVRQGYGLTETCAATCVQ-MGCDNTTGAVGPPTPSACIKLKDwEEGNYKNADlhnpEvgmrRGEVLIGGPLVCSGYLVDPDDPdADVVQKNKEEFSVDEKGVRWFHTGDIGQFTPDGNLQIIDRKKDLVKLqQGEYVALSKVENALKACPLVEM 621
                 55566677779999999999887.46899999999999999998764366764433222223222269*****************986155555555555555555566779***********************637******************986 PP

>> TIGR01923  menE: O-succinylbenzoate-CoA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.1   0.0     1e-12   3.5e-10      13     173 ..     124     336 ..     111     350 .. 0.75
   2 !   45.3   0.0   3.3e-15   1.1e-12     248     386 ..     467     631 ..     436     638 .. 0.79

  Alignments for each domain:
  == domain 1    score: 37.1 bits;  conditional E-value: 1e-12
   TIGR01923  13 AkalkaqsvrkgdvvallaenslelvllllallllgveiallntrLtekelttqlkelkvellltdslleekedlqaisldeleaeae..........................................aeevs.......lsa.sfsldkiatlifTSgstGkpKavvqtfrnhyasavgsaeklgftesd........nWLlsLPlyHvsGlsilf 173
                 A  ++  +++ gd v ++ae + e +++ la++  + +++ +   L  + l++ +k++k +l+++d++l  k+   a ++ +  ++                                            a   +       ls    + d++a++++TSg+tG pK+vv++++ ++a   g+ ++++  + d         +L  LPl H+  +s+ +
  MMETSP1137-20121227|3249_1 124 AGMVSFAGLKAGDSVVIYAETQREWMIACLAAFSQSLVVVTVYATLGGEGLAHGVKQTKAKLIIADAKLLPKV---AAAVRQYGKQMSkcthvisipdpvqtadskneavgktarqelsqagwasmtfqeA---QakgaassLSPvPPKPDDTAVIMYTSGTTGLPKGVVIAHKSIVACSEGLEDRMKTFSGDivdkgpehVYLAYLPLAHIMEISLEI 336
                 5566778999************************************************************766...3344444433333346888888888888888888777766666666666665550...0555444454413468**********************************99986554422222222699999999998777655 PP

  == domain 2    score: 45.3 bits;  conditional E-value: 3.3e-15
   TIGR01923 248 glpiyksyGmTEtasqvvtlevevlkaktdsvGkplasveikikvdd..............keghgeilvkganlmkgYl...........ekgelteaveeqG..wlktgDlgeldgegfllvldRrddli.ISGGENiypeeiEkvlkslpevqeavvvpkeDse 386
                 + p+ ++yG TEt++  +   +  ++  t++vG p +s  ik+k  +                  ge+l+ g+ +  gYl           +k++ +  v+e+G  w++tgD+g++  +g+l + dR++dl+ +  GE +   ++E++lk  p v+  ++ ++  + 
  MMETSP1137-20121227|3249_1 467 NAPVRQGYGLTETCAATCVQ-MGCDN-TTGAVGPPTPSACIKLKDWEegnyknadlhnpevGMRRGEVLIGGPLVCSGYLvdpddpdadvvQKNKEEFSVDEKGvrWFHTGDIGQFTPDGNLQIIDRKKDLVkLQQGEYVALSKVENALKACPLVEMPMCYARSSES 631
                 56899*********976654.44444.4789************7655678999999987666678**************944333222221222222345667788*************************96899********************99998876655 PP

>> TIGR03205  pimA: dicarboxylate--CoA ligase PimA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.1   0.1     1e-10   3.5e-08      47     251 ..     110     330 ..      97     343 .. 0.65
   2 !   34.8   0.0   3.8e-12   1.3e-09     315     469 ..     445     619 ..     440     626 .. 0.72

  Alignments for each domain:
  == domain 1    score: 30.1 bits;  conditional E-value: 1e-10
   TIGR03205  47 itytele.alaetaaaallragygkdasvalylgntpdhpinffgalkagarvvhlspldgeralshklsdsgarllitsdlaallp...malkflekglld..rliv......cedeswgkvg.tpkaaipa.dprivtyad.fvkgaakpaewpavkaddvallqytggttglpkgamlthgnltsav.siydvwgkr..sraergdvervicvlplfhiy 251
                 i++ el  a+ +  a  +  ag     sv +y     +  i  + a+     vv +    g   l+h + ++ a+l+i+   a llp    a++   k +     +i         d++  +vg t +  + +     +t+++   kgaa+ ++    k+dd a++ yt gttglpkg +++h  + ++   + d   +   +  ++g  +  ++ lpl hi 
  MMETSP1137-20121227|3249_1 110 ISFRELGsAFHNLGAGMVSFAGLKAGDSVVIYAETQREWMIACLAAFSQSLVVVTVYATLGGEGLAHGVKQTKAKLIIAD--AKLLPkvaAAVRQYGKQMSKctHVISipdpvqTADSKNEAVGkTARQELSQaGWASMTFQEaQAKGAASSLSPVPPKPDDTAVIMYTSGTTGLPKGVVIAHKSIVACSeGLEDRMKTFsgDIVDKGPEHVYLAYLPLAHIM 330
                 788888614445555556679999999**********************999999988888889***********99874..4455521145555555543311233211111133444444441333344431344567765156888888887788*************************9876543134443322201233444445556677777776 PP

  == domain 2    score: 34.8 bits;  conditional E-value: 3.8e-12
   TIGR03205 315 atigsggaplpvevaklferkvglklksgwgmtetcspgtghplegpdkpgsiglmlpgieldvvsldd...pkkvlppgev....gelrirgpnvtrgywnraee........saeaf.vgdr....fltgdigyvdrdgyfflvdrkkdmi.isggfnvypqmieqaiyelpav 469
                   +g+g apl  +v  + +   +  ++ g+g+tetc+  t+  +   +  g++g   p   + +   ++    +  l   ev    ge+ i gp v  gy   +++        + e f v+++    f tgdig +  dg + ++drkkd++ +  g  v    +e+a+   p v
  MMETSP1137-20121227|3249_1 445 VFAGTGSAPLSPKVQVFVQTAFNAPVRQGYGLTETCAA-TCVQMGCDNTTGAVGPPTPSACIKLKDWEEgnyKNADLHNPEVgmrrGEVLIGGPLVCSGYLVDPDDpdadvvqkNKEEFsVDEKgvrwFHTGDIGQFTPDGNLQIIDRKKDLVkLQQGEYVALSKVENALKACPLV 619
                 578*********************************86.444555556678999888876555554443111334566666623336999**********988765211111113344435543455689*********************9845677778888888888877766 PP

>> TIGR03208  cyc_hxne_CoA_lg: cyclohexanecarboxylate-CoA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.9   0.0   1.4e-10   4.9e-08     177     240 ..     250     313 ..     102     339 .. 0.72
   2 !   26.4   0.0   1.8e-09   6.1e-07     319     466 ..     451     620 ..     433     656 .. 0.76

  Alignments for each domain:
  == domain 1    score: 29.9 bits;  conditional E-value: 1.4e-10
   TIGR03208 177 rdddpdaaailrgdrlspddvtqliytsgttgepkgvmhtantllsnilayaerlelgegdvil 240
                   +   aa+ l    + pdd + ++ytsgttg pkgv+ +  ++++      +r++  +gd++ 
  MMETSP1137-20121227|3249_1 250 EAQAKGAASSLSPVPPKPDDTAVIMYTSGTTGLPKGVVIAHKSIVACSEGLEDRMKTFSGDIVD 313
                 33444567788888899*******************************************9985 PP

  == domain 2    score: 26.4 bits;  conditional E-value: 1.8e-09
   TIGR03208 319 gapipgalverarealgakivsawgmtengavtvtkpddaeekasvtdglplpgvevkvidad.....gaklsagevg....rllvraasnfggylkrp........hln....avdaeg..wfdtgdlafldaegyiriagrskdvi.irggenipvveieallykhpava 466
                  ap+ + +    ++a+ a +   +g+te+ a t +++  ++   +v  g p p   +k+ d +     +a l + evg    ++l+ +    +gyl  p        + n    +vd +g  wf tgd+ + + +g ++i  r+kd++ ++ ge + + ++e+ l   p v 
  MMETSP1137-20121227|3249_1 451 SAPLSPKVQVFVQTAFNAPVRQGYGLTETCAATCVQMGCDNTTGAV--GPPTPSACIKLKDWEegnykNADLHNPEVGmrrgEVLIGGPLVCSGYLVDPddpdadvvQKNkeefSVDEKGvrWFHTGDIGQFTPDGNLQIIDRKKDLVkLQQGEYVALSKVENALKACPLVE 620
                 489999999999************************9988877766..6666666666666441112256788888853322799***9*******88733333222223333378888888************************885799************99988775 PP

>> TIGR02262  benz_CoA_lig: benzoate-CoA ligase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.5   0.1   2.8e-15   9.6e-13      18     200 ..      97     306 ..      81     340 .. 0.70
   2 !    6.6   0.0    0.0017      0.58     289     430 ..     453     617 ..     434     624 .. 0.74

  Alignments for each domain:
  == domain 1    score: 45.5 bits;  conditional E-value: 2.8e-15
   TIGR02262  18 rgdklafiddvsslsygeleaevrrvaa.alrrlGvkreervllvlldtvdfpivflGairaGivpvalntlltaddyaylledsrarvvlvseellpvlkevlak....lpdleklvvvgak......p......agekqlae....llateseqekaaat.......kaddpafwlyssGstGapkGvvhvhsnlrvtaelyarkvlgl 200
                   +kl+f d+ s +s+ el ++ ++++a ++   G+k  + v++      ++ i+ l a    +v v++ + l  +  a+ +++++a+ +++  +llp +++++ +    + + ++++ + ++      +      +++++l++     ++ ++ q k aa+       k+dd+a  +y+sG+tG pkGvv  h ++ + +e    + ++ 
  MMETSP1137-20121227|3249_1  97 EVEKLTFADEFSWISFRELGSAFHNLGAgMVSFAGLKAGDSVVIYAETQREWMIACLAAFSQSLVVVTVYATLGGEGLAHGVKQTKAKLIIADAKLLPKVAAAVRQygkqMSKCTHVISIPDPvqtadsKneavgkTARQELSQagwaSMTFQEAQAKGAASslspvppKPDDTAVIMYTSGTTGLPKGVVIAHKSIVACSEGLEDR-MKT 306
                 2489******************999987366689****************************************************************9999986411115555666654443322222122222222333332111122223333333332222222289**************************9999985444.344 PP

  == domain 2    score: 6.6 bits;  conditional E-value: 0.0017
   TIGR02262 289 alpeevGkrwkarfGvdildGvGstellhiflsnlpddvkyGtsGkpvpGyrlrlvd.dggedvadg....ev....Gellvsgpssaagywnnre........ksratfe....G.ewtrsGdkyvrnddGsytyaGrtddllkv.sGiyvspfevesaliahe 430
                 +l  +v    ++ f   + +G G te        +  d   G+ G p p   ++l d ++g+   ++    ev    Ge+l+ gp  ++gy  +++        k ++ f     G  w ++Gd      dG+     r  dl+k+  G yv+  +ve+al a +
  MMETSP1137-20121227|3249_1 453 PLSPKVQVFVQTAFNAPVRQGYGLTETCAATCVQMGCDNTTGAVGPPTPSACIKLKDwEEGNYKNADlhnpEVgmrrGEVLIGGPLVCSGYLVDPDdpdadvvqKNKEEFSvdekGvRWFHTGDIGQFTPDGNLQIIDRKKDLVKLqQGEYVALSKVENALKACP 617
                 4566666677888888888899999998888888888889999999999999999988666544433222222223389999999999999866532222233366777752222236***************************8459***********97655 PP

>> TIGR01734  D-ala-DACP-lig: D-alanine--poly(phosphoribitol) ligase, subunit 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.0      0.14        47      26     108 ..     110     193 ..      92     230 .. 0.75
   2 !   24.2   0.0   7.2e-09   2.5e-06     124     173 ..     250     299 ..     209     316 .. 0.76
   3 !   22.9   0.0   1.8e-08   6.1e-06     342     432 ..     528     628 ..     457     656 .. 0.74

  Alignments for each domain:
  == domain 1    score: 0.1 bits;  conditional E-value: 0.14
   TIGR01734  26 ltykeLkeesdklaaalqe.rlleekePiivfGkqefemlvaflgsiksGhayiPvDtsipleriekikeaaepelvievaels 108
                  +++eL ++  +l+a +     l++ + ++++ +++ e ++a l++  +    + v +    e +++  ++++++l+i+ a+l 
  MMETSP1137-20121227|3249_1 110 ISFRELGSAFHNLGAGMVSfAGLKAGDSVVIYAETQREWMIACLAAFSQSLVVVTVYATLGGEGLAHGVKQTKAKLIIADAKLL 193
                 566777777777765544414588888999999999998888899988888889998888888888888888888888877664 PP

  == domain 2    score: 24.2 bits;  conditional E-value: 7.2e-09
   TIGR01734 124 eieeekaeavelekavkeddnyyiiytsGstGkPkGvqishdnLvsftnW 173
                 e+++++a +       k dd+  i+ytsG+tG PkGv i h+++v+ ++ 
  MMETSP1137-20121227|3249_1 250 EAQAKGAASSLSPVPPKPDDTAVIMYTSGTTGLPKGVVIAHKSIVACSEG 299
                 4444444333334445889*************************988775 PP

  == domain 3    score: 22.9 bits;  conditional E-value: 1.8e-08
   TIGR01734 342 ekGeivivGdsvskGylnnpe........kteeaff.eaegkrayrtGDagtieddgllfyqGrlDfqikln.GyrieLedieanlkkskyikeavvvPky 432
                  +Ge++i G+ v  Gyl +p+        k +e f  +++g r ++tGD g+++ dg l +  r    +kl+ G  + L  +e+ lk    ++  +   + 
  MMETSP1137-20121227|3249_1 528 RRGEVLIGGPLVCSGYLVDPDdpdadvvqKNKEEFSvDEKGVRWFHTGDIGQFTPDGNLQIIDRKKDLVKLQqGEYVALSKVENALKACPLVEMPMCYARS 628
                 58***************998622233332444555415678999********************9999**954999**********999888876666555 PP

>> TIGR02188  Ac_CoA_lig_AcsA: acetate--CoA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.1   0.1   2.2e-14   7.7e-12      81     259 ..     105     288 ..      40     297 .. 0.68
   2 !    5.4   0.0    0.0028      0.96     480     527 ..     571     619 ..     555     636 .. 0.87

  Alignments for each domain:
  == domain 1    score: 42.1 bits;  conditional E-value: 2.2e-14
   TIGR02188  81 deegedsrkltYaellrevcrlanvlke.lGvkkgdrvaiYlpmipeaviamlacaRiGavhsvvfaGfsaealaeRivdaeaklvitadegl.......Rg.gkvielkkiv...dealekaeesvekvlvvkrtgeevaewkegrDvwweelvekeasaecepekldsedplfiLYtsGstGkPkGvlh 259
                 d    +   ++++el +   +l + + + +G+k gd+v+iY     e +ia la+     v   v+a    e la+ +++++akl+i+  + l       R+ gk+++  + v    + +++a++  ++  v k + +e++       ++++e+ +k+a ++++p + + +d   i+YtsG+tG PkGv+ 
  MMETSP1137-20121227|3249_1 105 D----EFSWISFRELGSAFHNLGAGMVSfAGLKAGDSVVIYAETQREWMIACLAAFSQSLVVVTVYATLGGEGLAHGVKQTKAKLIIADAKLLpkvaaavRQyGKQMSKCTHVisiPDPVQTADS--KNEAVGKTARQELS-QAGWASMTFQEAQAKGAASSLSPVPPKPDDTAVIMYTSGTTGLPKGVVI 288
                 3....3457999999999888866555549*******************************************************9965443211000012213332222222011223333332..33344444444433.33345677888888889999999999********************984 PP

  == domain 2    score: 5.4 bits;  conditional E-value: 0.0028
   TIGR02188 480 lyftGDgarrdkdGyiwilGRvDdvinv.sGhrlgtaeiesalvsheav 527
                  ++tGD  +   dG ++i+ R  d++++  G  ++ + +e+al + + v
  MMETSP1137-20121227|3249_1 571 WFHTGDIGQFTPDGNLQIIDRKKDLVKLqQGEYVALSKVENALKACPLV 619
                 799***********************98459999********9877665 PP

>> TIGR02275  DHB_AMP_lig: (2,3-dihydroxybenzoyl)adenylate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0   4.4e-06    0.0015      38     173 ..      99     236 ..      83     346 .. 0.70
   2 !   17.6   0.0   5.7e-07    0.0002     377     456 ..     528     620 ..     433     655 .. 0.78

  Alignments for each domain:
  == domain 1    score: 14.7 bits;  conditional E-value: 4.4e-06
   TIGR02275  38 daiaiicgerkfsyrelderadnlaasl.tklGikkgdtavvqlpniaefyivffallklGvaPvlalfshrkselkayaeqieaalliidrahslfdedalarelkaklstlkvvivagk..eveeelksaleslaee 173
                 ++++  ++   +s+rel  + +nl a++ + +G+k gd++v+     +e+ i+ +a + + ++ v    +     l   ++q++a+l+i+d +  l +  a +r+  +++s+   vi   +  ++++++++a+ ++a +
  MMETSP1137-20121227|3249_1  99 EKLTFADEFSWISFRELGSAFHNLGAGMvSFAGLKAGDSVVIYAETQREWMIACLAAFSQSLVVVTVYATLGGEGLAHGVKQTKAKLIIADAK-LLPKVAAAVRQYGKQMSKCTHVISIPDpvQTADSKNEAVGKTARQ 236
                 5566666666679***********99872569****************************999888877777788888889999988877755.555667778888888888777665443335556666555554433 PP

  == domain 2    score: 17.6 bits;  conditional E-value: 5.7e-07
   TIGR02275 377 eaGrlltrGPytirGyykae........ehnakaf..daeG..fyitGdlvkltkeGyivveGrakdqin.rGGekiaaeeienlllkhpavi 456
                   G +l+ GP    Gy   +        + n++ f  d++G  ++ tGd+ ++t++G + +  r+kd +  + Ge +a  ++en l + p v 
  MMETSP1137-20121227|3249_1 528 RRGEVLIGGPLVCSGYLVDPddpdadvvQKNKEEFsvDEKGvrWFHTGDIGQFTPDGNLQIIDRKKDLVKlQQGEYVALSKVENALKACPLVE 620
                 4677889999999999876522223333466666633667755699**********************98578************98888765 PP

>> TIGR02316  propion_prpE: propionate--CoA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.2   0.1   1.4e-11   4.9e-09      84     251 ..     110     287 ..      85     311 .. 0.81

  Alignments for each domain:
  == domain 1    score: 33.2 bits;  conditional E-value: 1.4e-11
   TIGR02316  84 ltyrqlhrevnal.asalralgvrrgdrvliylpmiaeaalallacarigaihsvvfggfashslaariddatpklivsadag...arggkvieykklldaaiaeaqhkpahvllvdrglaklrrvpgrdv...dyaalrrqhedadvevewl.....esnepsyilytsgttgkpkgvq 251
                 +++r+l      l a ++   g++ gd v+iy  +  e ++a la      +   v+  +  + la  + +++ kli+ ada         v +y k +   +++  + p  v   d + + + +++ +++    +a+++ q  +a+     l     + +++++i+ytsgttg pkgv 
  MMETSP1137-20121227|3249_1 110 ISFRELGSAFHNLgAGMVSFAGLKAGDSVVIYAETQREWMIACLAAFSQSLVVVTVYATLGGEGLAHGVKQTKAKLII-ADAKllpKVAAAVRQYGKQMS-KCTHVISIPDPVQTADSKNEAVGKTARQELsqaGWASMTFQEAQAKGAASSLspvppKPDDTAVIMYTSGTTGLPKGVV 287
                 678888877655527788889******************************************************998.677512134667778888775.57888999999*99999988776666555411178999999999998888882223345899***************95 PP

>> TIGR03443  alpha_am_amid: L-aminoadipate-semialdehyde dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.8   0.0   1.7e-05    0.0059     271     440 ..     110     293 ..      89     305 .. 0.63
   2 !   14.1   0.0   3.5e-06    0.0012     669     735 ..     560     628 ..     540     690 .. 0.81

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 1.7e-05
   TIGR03443 271 ftykqideas.nilahyllktGikrgdvvmvyasrgvdlvvavlGvlkaGatfsvidPayPP.arqtiylsvakPralivleka...Geldelvedyiedelel..vteipa.lklqddGsle.Ggklekee......tdvlasyekl..kdkktgvvvGPdsnptlsftsGseGiPkGvkGrhfsl 440
                 ++++++  a  n+ a  +  +G+k gd v++ya    + ++a l  +       v+   y       +   v + +a + +++a    +++  v++y ++  +   v +ip+ ++ +d+ + + G +  +e       + ++++ ++   +++ + v   Pd ++ + +tsG++G+PkGv   h s+
  MMETSP1137-20121227|3249_1 110 ISFRELGSAFhNLGAGMVSFAGLKAGDSVVIYAETQREWMIACLAAFSQSL---VVVTVYATlGGEGLAHGVKQTKAKLIIADAkllPKVAAAVRQYGKQMSKCthVISIPDpVQTADSKNEAvGKTARQELsqagwaSMTFQEAQAKgaASSLSPVPPKPDDTAVIMYTSGTTGLPKGVVIAHKSI 293
                 566666666414445555668999999999999999999999877665443...44445544134567788999999999999955556677788886654443113345542555554443303333332211111122333333221022333455679*******************9999886 PP

  == domain 2    score: 14.1 bits;  conditional E-value: 3.5e-06
   TIGR03443 669 refwlgpr.drlyrtGdlGrylPdGnvecsGraddqvkir.GfrielGeidthlsrhPlvrenvtlvrr 735
                 +ef +  +  r ++tGd+G+++PdGn +   r  d vk++ G  + l  ++  l   Plv   +   r 
  MMETSP1137-20121227|3249_1 560 EEFSVDEKgVRWFHTGDIGQFTPDGNLQIIDRKKDLVKLQqGEYVALSKVENALKACPLVEMPMCYARS 628
                 345333331589**************************954999**************99877766665 PP

>> TIGR01217  ac_ac_CoA_syn: acetoacetate-CoA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.1   1.3e-07   4.4e-05     112     286 ..     107     290 ..      39     314 .. 0.76
   2 ?   -1.4   0.0      0.29        98     499     559 ..     568     631 ..     446     684 .. 0.76

  Alignments for each domain:
  == domain 1    score: 19.6 bits;  conditional E-value: 1.3e-07
   TIGR01217 112 sakvtfeelrrqvaslaaalra.lGvkkGdrvagylpnipeavaallatasvGaiwsscspdfGargvldrfsqiepkllfsvdgyvynGkehdrrekvrevakelpdlravvlipyvg...dreklap..kvegaltledllaa..........aqaaelvfeqlpf..dhplyilfssGttGvpkaivhsa 286
                    ++f el     +l a + +  G+k+Gd v+ y     e + a la+ s   +  ++   +G +g+    +q + kl+++ d+         +   vr+  k++++  +v+ ip      d++++a+  +  + l  +    +          a+ a      +p   d    i+++sGttG+pk +v + 
  MMETSP1137-20121227|3249_1 107 FSWISFRELGSAFHNLGAGMVSfAGLKAGDSVVIYAETQREWMIACLAAFSQSLVVVTVYATLGGEGLAHGVKQTKAKLIIA-DAKLL----PKVAAAVRQYGKQMSKCTHVISIPDPVqtaDSKNEAVgkTARQELSQA----GwasmtfqeaqAKGAASSLSPVPPkpDDTAVIMYTSGTTGLPKGVVIAH 290
                 556788899999999988876527******************************************************9986.55544....356778899999999999999999644001333333322222222222....1333452231233344456667643367899*************99765 PP

  == domain 2    score: -1.4 bits;  conditional E-value: 0.29
   TIGR01217 499 gv.wah.GdyieltprGgivihGrs.datlnpnGvrlGsaeiynaverldeveeslvigqeqed 559
                 gv w h Gd  ++tp G + i  r  d    ++G  +  +++ na+++ + ve  ++ ++  e 
  MMETSP1137-20121227|3249_1 568 GVrWFHtGDIGQFTPDGNLQIIDRKkDLVKLQQGEYVALSKVENALKACPLVEMPMCYARSSES 631
                 3348776899999999999887775155556789999999999999999998888887776665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (730 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       114  (0.0277913); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                        12  (0.0029254); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.80u 0.16s 00:00:00.96 Elapsed: 00:00:00.75
# Mc/sec: 1284.69
//
Query:       MMETSP1137-20121227|3250_1  [L=169]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (169 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       241  (0.0587518); expected 82.0 (0.02)
Passed bias filter:                      129  (0.0314481); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.18s 00:00:00.39 Elapsed: 00:00:00.28
# Mc/sec: 796.65
//
Query:       MMETSP1137-20121227|3251_1  [L=494]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   1.4e-166  552.2   1.4   1.8e-166  551.8   0.9    1.1  1  TIGR01060 eno: phosphopyruvate hydratase
    1.8e-06   25.0   0.0    4.8e-06   23.6   0.0    1.6  1  TIGR01928 menC_lowGC/arch: o-succinylbenzoate synthase
    0.00052   17.0   0.0    0.00098   16.1   0.0    1.4  1  TIGR02534 mucon_cyclo: muconate and chloromuconate cycloisomerases


Domain annotation for each model (and alignments):
>> TIGR01060  eno: phosphopyruvate hydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  551.8   0.9  1.3e-169  1.8e-166       3     421 ..      55     488 ..      53     491 .. 0.94

  Alignments for each domain:
  == domain 1    score: 551.8 bits;  conditional E-value: 1.3e-169
   TIGR01060   3 dvearevldsrGnPtveveviledgtvgraivPsGastGekealelrdkdkkrylgkGvlkavenvneviapeliGldaldqaeidqili.eldgten.....ksklGanailavslavakaaakalelplyrylggvn.....alvlPvPllniinGGahadnkldlqefmivPvgaeslkealrlgaevfhalkkllkekg..latavGdeGGfaPnlksneealeilveaiekagykpgedvalaldvaasefydeekkkyvlkgeek....sltseelie.yleelvekypivsiedglseedwegfaeltkelGdkvqlvGddlfvtnaellkkGiekgvanailiklnqiGtltetleavklakkagytavishrsGetedttiadlavalnagqiktGslsrseriakynqLlrieeelgeeakyagkka 421
                   +ar+++dsrGnPtvev+  +++g++ ra+vPsGastG  ealelrd++k  y+gkGv kav+n+ne+i p+l+G+d ++q+eid +++ eldg++n     k+klGanailavs+av+ka a+a ++p+y+++++        + lPvP  niinGG+ha nkl +qefmi Pvga+s++ea+++g+ev+h+lk  +k+k    a +vGdeGGfaPn+ +++e l+++v aie agy  +  v++ +dvaasef++ e+++y l+ +++     +t +el++ +++ +v+ yp+vsied+++++d+e+   +t e+G k+q+vGddl vtn+ ++kk ie++++na+l+k+nqiGt+te++eav +ak ag+ ++ shrsGetedt+iadlav+l++gqiktG+  rser+akynqLlrieee g++a y+g++ 
  MMETSP1137-20121227|3251_1  55 GAKARQIFDSRGNPTVEVDLFTTKGSY-RAAVPSGASTGVYEALELRDGNKADYMGKGVSKAVSNINEIIGPALVGMDPTKQKEIDDKMVqELDGSKNdwgwsKAKLGANAILAVSMAVCKAGAAARDMPIYKHIAELAgnatdKFYLPVPAFNIINGGSHAGNKLAMQEFMILPVGASSFTEAMKMGSEVYHHLKLGIKKKYgqDACNVGDEGGFAPNIVEATEGLDLIVGAIEAAGY--TGKVKIGMDVAASEFWKAEEQVYDLNFKTEdksmYKTGKELLDhVYKAFVDDYPMVSIEDPFDQDDFESCGRMTAEVGAKCQIVGDDLLVTNPTRVKKAIESNACNALLLKVNQIGTVTESIEAVGMAKAAGWGVMTSHRSGETEDTFIADLAVGLKTGQIKTGAPCRSERLAKYNQLLRIEEECGAAAIYTGENF 488
                 568**********************65.999******************************************************9877538****987777789******************************998776777899*************************************************999999766899*******************************..567999*****************8876665456566778888626999*************************************************************************************************************************************************875 PP

>> TIGR01928  menC_lowGC/arch: o-succinylbenzoate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.6   0.0   3.5e-09   4.8e-06     196     279 ..     342     428 ..     295     431 .. 0.88

  Alignments for each domain:
  == domain 1    score: 23.6 bits;  conditional E-value: 3.5e-09
   TIGR01928 196 LdrydllyiEePfkadDlselkelkkel..ltpiclDE.sitslddlrklielgavkviniKpgRlGGltealkviellkehgakvw 279
                 +d+y ++ iE+Pf+ dD  +  +++ e+  +  i  D+  +t+   ++k+ie +a++ + +K+  +G +te+  ++ ++k  g +v+
  MMETSP1137-20121227|3251_1 342 VDDYPMVSIEDPFDQDDFESCGRMTAEVgaKCQIVGDDlLVTNPTRVKKAIESNACNALLLKVNQIGTVTESIEAVGMAKAAGWGVM 428
                 699*********************9997334455555527999************************************99888775 PP

>> TIGR02534  mucon_cyclo: muconate and chloromuconate cycloisomerases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0   7.1e-07   0.00098     217     291 ..     349     426 ..     332     452 .. 0.88

  Alignments for each domain:
  == domain 1    score: 16.1 bits;  conditional E-value: 7.1e-07
   TIGR02534 217 lieqPtaaedlealarltarl..evpimadea.vtgPedalelakksaadvialkiaksGGlleakevaaiakaagia 291
                  ie P  ++d e+  r+ta +  +  i+ d+  vt P    + ++ +a + + lk+++ G ++e+ e + +akaag  
  MMETSP1137-20121227|3251_1 349 SIEDPFDQDDFESCGRMTAEVgaKCQIVGDDLlVTNPTRVKKAIESNACNALLLKVNQIGTVTESIEAVGMAKAAGWG 426
                 69****************98633788999986267799999999*******************************965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (494 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       128  (0.0312043); expected 82.0 (0.02)
Passed bias filter:                       99  (0.0241346); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.40u 0.16s 00:00:00.56 Elapsed: 00:00:00.46
# Mc/sec: 1417.45
//
Query:       MMETSP1137-20121227|3252_1  [L=169]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (169 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        70  (0.0170648); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.15s 00:00:00.31 Elapsed: 00:00:00.42
# Mc/sec: 531.10
//
Query:       MMETSP1137-20121227|3253_1  [L=443]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0018   15.1   0.0     0.0024   14.7   0.0    1.1  1  TIGR01678 FAD_lactone_ox: sugar 1,4-lactone oxidases


Domain annotation for each model (and alignments):
>> TIGR01678  FAD_lactone_ox: sugar 1,4-lactone oxidases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0   5.8e-07    0.0024      50     180 ..      63     192 ..      32     221 .. 0.87

  Alignments for each domain:
  == domain 1    score: 14.7 bits;  conditional E-value: 5.8e-07
   TIGR01678  50 PsdivvtdgylvsldklnkvlkfdeekaditveaGirlyqlneildekGyslsnlGsisevsv.aGiistgthgsslkhgllssqvvaltivladGellelseerdkdvfkaarvslGalGiivsvtirvvP 180
                  s  +  d+  v+l +l+ vl +d+ ++ + + +G +l++++   +  G +  +lG   e  v    +s ++   s +hgl + ++v++ +v+ +G +    +e  ++v++  r    alGi+  + +r  P
  MMETSP1137-20121227|3253_1  63 TSRKIRDDDISVDLSRLKDVL-VDHVHMIVHIGSGALLMDVDRACQPFGVAC-VLGFNPEANVlEQCVSNCAGLLSREHGLAADNLVEIELVEPNGVVRVHGHESLEEVLRGLRKGDRALGIVTRISLRAFP 192
                 555566678889999998886.788899999******************996.7999999888357899***********************************************************9988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (443 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        74  (0.01804); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.31u 0.15s 00:00:00.46 Elapsed: 00:00:00.41
# Mc/sec: 1426.13
//
Query:       MMETSP1137-20121227|3254_1  [L=245]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (245 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       137  (0.0333983); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.18s 00:00:00.41 Elapsed: 00:00:00.45
# Mc/sec: 718.61
//
Query:       MMETSP1137-20121227|3255_1  [L=608]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.3e-66  221.6   0.0    2.3e-66  220.8   0.0    1.3  1  TIGR00505 ribA: GTP cyclohydrolase II
    3.1e-14   50.8   1.4    1.4e-09   35.6   0.4    2.3  2  TIGR00506 ribB: 3,4-dihydroxy-2-butanone-4-phosphate synthase
  ------ inclusion threshold ------
        1.3    4.7   7.1        1.8    4.1   5.0    1.1  1  TIGR03658 IsdH_HarA: haptoglobin-binding heme uptake protein HarA


Domain annotation for each model (and alignments):
>> TIGR00505  ribA: GTP cyclohydrolase II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  220.8   0.0   1.7e-69   2.3e-66       6     191 .]     360     553 ..     356     553 .. 0.94

  Alignments for each domain:
  == domain 1    score: 220.8 bits;  conditional E-value: 1.7e-69
   TIGR00505   6 aklptkyGklkivgfkekeddkeelllvkadis.a......eedvlvrihseCltGdalfslrCdCGeqleralkliakegkGviiylr.qeGrgiGlinklkayalqdkGadtveanlelgfkaderdfslaaeiledlgvkkvrlltnnPekieelkkaglkvvervpliveenkenekyletkkekmGhll 191
                 a++ptk+G +++ ++++k d  e+++lvk+d +         + +lvr hseC tGd++ slrCdCG qle+alk i+ +g Gv++ylr qeGrgiGl  k++ay+lq++G dt++an+elg ++d r+++ +a+il+dlg++++rl+ nnP+k   l+  gl++vervp  +  n en  yl+tk e+mGhll
  MMETSP1137-20121227|3255_1 360 ARMPTKFGLFMAHCYRSKIDGVEHIALVKSDSEdLdtpfckSRAALVRAHSECCTGDVFGSLRCDCGPQLEQALKSIDADGYGVLLYLRgQEGRGIGLGAKIHAYSLQERGLDTMDANTELGLPVDSREYGTGAQILTDLGIRDMRLISNNPKKFFGLTGFGLRIVERVPSHIAPNPENLAYLKTKEERMGHLL 553
                 789**************************9876431111114568***************************************************************************************************************************************************97 PP

>> TIGR00506  ribB: 3,4-dihydroxy-2-butanone-4-phosphate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.0   4.8e-06    0.0065       3      55 ..      79     131 ..      77     184 .. 0.89
   2 !   35.6   0.4     1e-12   1.4e-09     104     202 ..     248     344 ..     202     346 .. 0.65

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 4.8e-06
   TIGR00506   3 erveealealkkgeivlvlDdedREnEgDlivaaekvtpekiallakdasGli 55 
                 e+++  ++a+++g+ v++ +d d E    +++a + vt  +i +l ++a+ l 
  MMETSP1137-20121227|3255_1  79 EALQGVIDAFRQGNLVMLSEDGDSEAAVSFMIAPQAVTACHIDFLLEHAKRLQ 131
                 5677889*****************************************98764 PP

  == domain 2    score: 35.6 bits;  conditional E-value: 1e-12
   TIGR00506 104 isaadRaltiraladvvke.........gkdfrrPGHvflLrAadggvlkRaGhtEasvdLaelaglkpvavicEllnddGtmlrkeelveyakkhdlkllsiedlie 202
                 ++a+  +    a                 ++fr PG v l  A++ggvl+RaG tEa ++La+++gl pv+v + l    G     + l + a + +l++ s +dl++
  MMETSP1137-20121227|3255_1 248 VTASSTVAGTTA------GaneasagggKHSFRCPGAVPLACARKGGVLHRAGATEAVIELARISGLPPVGVHATLPAS-G----LDALRDAAARWGLTYASTADLVA 344
                 333322222222......1333444665689****************************************98766433.2....23334445555566666666665 PP

>> TIGR03658  IsdH_HarA: haptoglobin-binding heme uptake protein HarA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   5.0    0.0013       1.8     672     733 ..     189     253 ..     175     259 .. 0.86

  Alignments for each domain:
  == domain 1    score: 4.1 bits;  conditional E-value: 0.0013
   TIGR03658 672 nvqtgqegkvadtd...vaensstatnpkdasdkadviepesdvvkdadnnidkdvqhdvdhlsd 733
                 n   g+eg+ ad+d   v+ n  ta     ++d ad    ++d   dad   + d   dv   s 
  MMETSP1137-20121227|3255_1 189 NFGLGDEGQTADADttaVTANGDTAGATDATADVADTTTAKADATADADATAEADATADVTASST 253
                 55679999999976444788999**999999****************************987665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (608 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       138  (0.0336421); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.41u 0.15s 00:00:00.55 Elapsed: 00:00:00.51
# Mc/sec: 1573.52
//
Query:       MMETSP1137-20121227|3256_1  [L=355]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (355 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        70  (0.0170648); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.12s 00:00:00.37 Elapsed: 00:00:00.36
# Mc/sec: 1301.56
//
Query:       MMETSP1137-20121227|3257_1  [L=337]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (337 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        97  (0.023647); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.16s 00:00:00.41 Elapsed: 00:00:00.56
# Mc/sec: 794.29
//
Query:       MMETSP1137-20121227|3258_1  [L=999]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (999 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       119  (0.0290102); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.59u 0.16s 00:00:00.75 Elapsed: 00:00:01.63
# Mc/sec: 808.94
//
Query:       MMETSP1137-20121227|3259_1  [L=76]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.018   11.9   0.4      0.019   11.8   0.3    1.0  1  TIGR03863 PQQ_ABC_bind: ABC transporter, substrate binding protein, PQQ-dependent alcohol dehydrogenase system


Domain annotation for each model (and alignments):
>> TIGR03863  PQQ_ABC_bind: ABC transporter, substrate binding protein, PQQ-dependent alcohol dehydrogenase system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.3   4.6e-06     0.019      63     105 ..      27      69 ..       5      73 .. 0.89

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 4.6e-06
   TIGR03863  63 lvvdlpaaellaladaakakealllnvsaeddaLRgadCranl 105
                  +++++ a++l + ++a  ++a+++ v+a+d aL +  Cra++
  MMETSP1137-20121227|3259_1  27 AILRVRYATVLDVLKVALRSGAVVVAVQAADAALVHXGCRASV 69 
                 5889999*********************************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (76 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       150  (0.0365675); expected 82.0 (0.02)
Passed bias filter:                      102  (0.0248659); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.15u 0.16s 00:00:00.31 Elapsed: 00:00:00.35
# Mc/sec: 286.60
//
Query:       MMETSP1137-20121227|3260_1  [L=154]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (154 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        52  (0.0126767); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.19s 00:00:00.34 Elapsed: 00:00:00.64
# Mc/sec: 317.60
//
Query:       MMETSP1137-20121227|3262_1  [L=234]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00091   15.0   4.4       0.19    7.3   0.0    2.4  2  TIGR02917 PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein


Domain annotation for each model (and alignments):
>> TIGR02917  PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.0     0.011        45      69     117 ..      16      65 ..      13      90 .. 0.77
   2 !    7.3   0.0   4.7e-05      0.19     357     393 ..     100     136 ..      57     138 .. 0.75

  Alignments for each domain:
  == domain 1    score: -0.5 bits;  conditional E-value: 0.011
   TIGR02917  69 qGdaaaAekeLrkAl.slgyskeqvlplLarayllqgkfqkvldelekks 117
                 +G++ +A+ e + +  s  ++ +q    + ra + qg++  v+de+++  
  MMETSP1137-20121227|3262_1  16 LGNYTQAVSEANSVHfSSDAARAQRDFFMYRAFVEQGQYRVVIDEVGASA 65 
                 68888888888887547778888888899999999999999999997765 PP

  == domain 2    score: 7.3 bits;  conditional E-value: 4.7e-05
   TIGR02917 357 ekdsddsallsllGeayLekgdfekAaeylakaseld 393
                  +++++ +ll ++G  +L+++df++A ++l ++ +ld
  MMETSP1137-20121227|3262_1 100 PSAQQNWQLLLMAGTVLLHEQDFKEALKLLHQNPQLD 136
                 46789999**********************9998875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (234 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       166  (0.0404681); expected 82.0 (0.02)
Passed bias filter:                      114  (0.0277913); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.26u 0.13s 00:00:00.39 Elapsed: 00:00:00.41
# Mc/sec: 753.30
//
Query:       MMETSP1137-20121227|3263_1  [L=98]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (98 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        38  (0.00926377); expected 82.0 (0.02)
Passed bias filter:                       34  (0.00828864); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.13s 00:00:00.26 Elapsed: 00:00:00.27
# Mc/sec: 479.07
//
Query:       MMETSP1137-20121227|3264_1  [L=209]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (209 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        95  (0.0231594); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.15s 00:00:00.36 Elapsed: 00:00:00.43
# Mc/sec: 641.53
//
Query:       MMETSP1137-20121227|3265_1  [L=327]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.014   13.3   0.2      0.023   12.6   0.1    1.3  1  TIGR03833 TIGR03833: conserved hypothetical protein


Domain annotation for each model (and alignments):
>> TIGR03833  TIGR03833: conserved hypothetical protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.1   5.7e-06     0.023      12      38 ..     267     293 ..     256     296 .. 0.86

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 5.7e-06
   TIGR03833  12 lkVsivlkkdqrtgklteGivkdiLTk 38 
                 + V++vl+kd  tg l +G v +i+ +
  MMETSP1137-20121227|3265_1 267 QAVKVVLEKDGITGLLFRGLVTKIISN 293
                 68**********************976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (327 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       145  (0.0353486); expected 82.0 (0.02)
Passed bias filter:                      112  (0.0273038); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.24u 0.16s 00:00:00.40 Elapsed: 00:00:00.41
# Mc/sec: 1052.69
//
Query:       MMETSP1137-20121227|3266_1  [L=129]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (129 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       116  (0.0282789); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.15s 00:00:00.31 Elapsed: 00:00:00.30
# Mc/sec: 567.55
//
Query:       MMETSP1137-20121227|3267_1  [L=246]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (246 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       126  (0.0307167); expected 82.0 (0.02)
Passed bias filter:                      103  (0.0251097); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.17s 00:00:00.39 Elapsed: 00:00:00.33
# Mc/sec: 983.92
//
Query:       MMETSP1137-20121227|3268_1  [L=153]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (153 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       104  (0.0253535); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.15s 00:00:00.31 Elapsed: 00:00:00.34
# Mc/sec: 593.95
//
Query:       MMETSP1137-20121227|3269_1  [L=499]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (499 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        68  (0.0165773); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.17s 00:00:00.51 Elapsed: 00:00:00.40
# Mc/sec: 1646.56
//
Query:       MMETSP1137-20121227|3270_1  [L=346]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (346 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        97  (0.023647); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.15s 00:00:00.41 Elapsed: 00:00:00.37
# Mc/sec: 1234.28
//
Query:       MMETSP1137-20121227|3271_1  [L=344]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (344 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        77  (0.0187713); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.17s 00:00:00.44 Elapsed: 00:00:00.34
# Mc/sec: 1335.42
//
Query:       MMETSP1137-20121227|3273_1  [L=182]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (182 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        24  (0.0058508); expected 82.0 (0.02)
Passed bias filter:                       24  (0.0058508); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.16s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 828.35
//
Query:       MMETSP1137-20121227|3275_1  [L=290]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (290 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       100  (0.0243784); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.14s 00:00:00.36 Elapsed: 00:00:00.47
# Mc/sec: 814.40
//
Query:       MMETSP1137-20121227|3276_1  [L=449]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (449 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       120  (0.029254); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.16s 00:00:00.47 Elapsed: 00:00:00.99
# Mc/sec: 598.62
//
Query:       MMETSP1137-20121227|3277_1  [L=2072]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.11    8.7   0.5       0.23    7.6   0.4    1.4  1  TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC


Domain annotation for each model (and alignments):
>> TIGR01494  ATPase_P-type: HAD ATPase, P-type, family IC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   0.4   5.6e-05      0.23     145     202 ..    1793    1850 ..    1780    1857 .. 0.91

  Alignments for each domain:
  == domain 1    score: 7.6 bits;  conditional E-value: 5.6e-05
   TIGR01494  145 llallvfllvlielktflkiilralillviaiPiaLpvavtialavgdkrlailvrsl 202 
                  l+a+ ++++++++++++   +lr+lil+v ++P  L +a+ +  a++ ++l ++ +++
  MMETSP1137-20121227|3277_1 1793 LMAIPLLVITYKSMQQYGWDVLRMLILAVPIVPFLLVLALNTLSALSRAALRCVSTEA 1850
                  6778888999999999999*****************************9999998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (2072 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       144  (0.0351048); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                        18  (0.0043881); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.14u 0.15s 00:00:01.28 Elapsed: 00:00:01.03
# Mc/sec: 2655.16
//
Query:       MMETSP1137-20121227|3278_1  [L=592]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (592 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       143  (0.034861); expected 82.0 (0.02)
Passed bias filter:                      102  (0.0248659); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.15s 00:00:00.54 Elapsed: 00:00:00.54
# Mc/sec: 1446.99
//
Query:       MMETSP1137-20121227|3279_1  [L=3704]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.054   10.8   0.1       0.12    9.7   0.0    1.5  1  TIGR03365 Bsubt_queE: 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE


Domain annotation for each model (and alignments):
>> TIGR03365  Bsubt_queE: 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.0   2.9e-05      0.12      12      81 ..    2809    2883 ..    2805    2887 .. 0.85

  Alignments for each domain:
  == domain 1    score: 9.7 bits;  conditional E-value: 2.9e-05
   TIGR03365   12 tiqGeGavi.GqktvfvrtaGcdyrcsWcdsl...fa.vdssakdeikaltaeevweelkelsgeefltvslsGG 81  
                   iq eG+   G    fv+ +G d + ++ d++   f+ +++++   +  ++a++vw++++ + ++ef    +s G
  MMETSP1137-20121227|3279_1 2809 VIQXEGRARgGADGFFVQIGGFDSHGDFFDTVnrkFTeINGAMEAFVAEMKAQNVWDDVTVIQASEFARTLVSNG 2883
                  59999998725789***************9863335547999999999*****************9999888877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (3704 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       209  (0.0509508); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                        37  (0.00901999); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 2.36u 0.16s 00:00:02.52 Elapsed: 00:00:02.29
# Mc/sec: 2125.60
//
Query:       MMETSP1137-20121227|3280_1  [L=110]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (110 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        61  (0.0148708); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.16s 00:00:00.31 Elapsed: 00:00:00.35
# Mc/sec: 414.82
//
Query:       MMETSP1137-20121227|3281_1  [L=580]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00095   16.3   0.0      0.011   12.7   0.0    2.0  2  TIGR01556 rhamnosyltran: rhamnosyltransferase
  ------ inclusion threshold ------
      0.022   11.5   0.5          2    5.0   0.1    2.2  2  TIGR03224 benzo_boxA: benzoyl-CoA oxygenase/reductase, BoxA protein


Domain annotation for each model (and alignments):
>> TIGR01556  rhamnosyltran: rhamnosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.0      0.02        42      66     101 ..      46      81 ..      43      87 .. 0.83
   2 !   12.7   0.0   5.5e-06     0.011     191     252 ..     171     230 ..     162     238 .. 0.87

  Alignments for each domain:
  == domain 1    score: 1.0 bits;  conditional E-value: 0.02
   TIGR01556  66 lkaslkkevekvlllDqDsvlaneflakelkllsee 101
                 +  +l  ++e v++lD D+ ++n+ l   + lls e
  MMETSP1137-20121227|3281_1  46 IAEALAAGYEWVVYLDSDAFVRNATLPLPQLLLSYE 81 
                 6778999***************99988777776655 PP

  == domain 2    score: 12.7 bits;  conditional E-value: 5.5e-06
   TIGR01556 191 yiipdivleHaiGdkkvrillglskeipkHsPlRrYYlvRnallllrkravslslklrevlf 252
                 y +  ++l+H  G+++ r++     ++ + +P R Y  +R+ l +lrk++ +l++klre++ 
  MMETSP1137-20121227|3281_1 171 YPHAVVHLDHNAGTRN-RLWTMCLATVELLAP-RGYPSLRDSLPMLRKKPKTLPYKLREQVL 230
                 778889*******987.666668899999999.9************************9886 PP

>> TIGR03224  benzo_boxA: benzoyl-CoA oxygenase/reductase, BoxA protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.1   0.00097         2      27     130 ..     175     285 ..     167     307 .. 0.69
   2 ?    4.5   0.0    0.0014       2.9      46      89 ..     366     410 ..     355     428 .. 0.82

  Alignments for each domain:
  == domain 1    score: 5.0 bits;  conditional E-value: 0.00097
   TIGR03224  27 ithddrnyvvkadvcnaclacvs.......pcptgaidnwrtvlkakaysleeqlkwdelpeevtleeveleaaavaeqddeaasegekvseveeveaaqkgstlapwsaa 130
                 + h d+n   +      cla v        p    ++   r+ +k+ +y l eq+   ++ + ++     l+ +a++++ + aas+++++s+ ++v++a ++st +  ++a
  MMETSP1137-20121227|3281_1 175 VVHLDHNAGTRNRLWTMCLATVEllaprgyPSLRDSLPMLRKKPKTLPYKLREQVLLAVVGAAADDMARLLNGSATPHNAPSAASNADTSSSASTVSSASNASTASASTSA 285
                 555566666665555666665542111111222234455677778889999999999999998888888889999999999999999999998888877777665543333 PP

  == domain 2    score: 4.5 bits;  conditional E-value: 0.0014
   TIGR03224  46 acvspcptgaidnwrtvlkakaysleeqlkw.delpeevtleeve 89 
                 a  +  pt   ++wr  + a++y+  +ql+w d  p  + ++ v+
  MMETSP1137-20121227|3281_1 366 ALAPEVPTALRNTWRDAEPANPYASLAQLSWcDATPGSAAAARVA 410
                 55567899999********************66677776666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (580 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       108  (0.0263286); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.18s 00:00:00.57 Elapsed: 00:00:00.46
# Mc/sec: 1664.21
//
Query:       MMETSP1137-20121227|3282_1  [L=201]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.1e-14   50.3   0.0    6.8e-14   49.9   0.0    1.2  1  TIGR03391 FeS_syn_CsdE: cysteine desulfurase, sulfur acceptor subunit CsdE


Domain annotation for each model (and alignments):
>> TIGR03391  FeS_syn_CsdE: cysteine desulfurase, sulfur acceptor subunit CsdE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.9   0.0   1.7e-17   6.8e-14      14     137 ..      28     146 ..      16     149 .. 0.87

  Alignments for each domain:
  == domain 1    score: 49.9 bits;  conditional E-value: 1.7e-17
   TIGR03391  14 eliatfaalrqwedryrqlillakklpalpeelkkedtelsGcenrvwlgyqlledGklhfygdseGrivrGllavlltaveGktaeqllaadplalfdelGlraqlsasradGlkalaeavka 137
                 + ++ f+ + + + ry+ql+ la+kl +++e+l+ e+ ++ Gc + v+++  ++ed k++f g s+ ++ +Gl+a+l+    G t e+ +      +++  Gl + l+  r +G+  + + +k+
  MMETSP1137-20121227|3282_1  28 KTVRAFQFVPDQKLRYQQLLFLAQKLSPMDETLQVEENKVPGCLSVVFVSA-RKEDNKIYFEGTSDSQLTKGLVALLINGLSGFTNEENK----PEFIQAAGLAQSLTPGRNNGFINMLALMKR 146
                 55677777778888*******************************999875.67999****************************98754....468899**************9888777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (201 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        76  (0.0185275); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.18u 0.15s 00:00:00.32 Elapsed: 00:00:00.36
# Mc/sec: 736.94
//
Query:       MMETSP1137-20121227|3285_1  [L=1040]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.7e-20   68.9   0.0    4.7e-10   36.4   0.0    2.2  2  TIGR02938 nifL_nitrog: nitrogen fixation negative regulator NifL
    2.1e-14   51.6   0.0    3.1e-09   34.9   0.0    2.3  2  TIGR00229 sensory_box: PAS domain S-box protein


Domain annotation for each model (and alignments):
>> TIGR02938  nifL_nitrog: nitrogen fixation negative regulator NifL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.0   0.0     2e-11     4e-08       6     113 ..     441     556 ..     438     561 .. 0.83
   2 !   36.4   0.0   2.3e-13   4.7e-10       8     115 ..     768     879 ..     764     900 .. 0.87

  Alignments for each domain:
  == domain 1    score: 30.0 bits;  conditional E-value: 2e-11
   TIGR02938   6 frqtvdqapvaisitdlkan...ilyanaafseitGyakeeviGknesvlsnrttPpevyqalwgslaekkPwaGkl.....lnrrkdgelylaeltvaPvlneaGetthflG.mhr 113
                 f +  ++ +v++ + d +     + ++n+af+++tGy+k+e +Gkn   l  r+t p     + ++l + +  +G l      n  k ge +   +++ Pv +  G  t+++G mhr
  MMETSP1137-20121227|3285_1 441 FTAMCEELDVSVVVVDARVGglpVTFVNSAFEDLTGYSKHEAVGKNLRFLQGRNTHPVAVGHFVNKLRQPE-ASGALdvvhvTNYTKXGEEFENCVSLHPVFDPEGRCTYWVGvMHR 556
                 5667788888888889887523377******************************9999999988886544.4554433232799****************************8899 PP

  == domain 2    score: 36.4 bits;  conditional E-value: 2.3e-13
   TIGR02938   8 qtvdqapvaisitdlk...anilyanaafseitGyakeeviGknesvlsnrttPpevyqalwgslaekkPwaGkllnrrkdgelylaeltvaPvlneaGetthf.lGmhrdv 115
                 ++v+  pva+s+td+    + +ly+n+ fs+ tGy + e  G     l    t p    ++ +sl +       lln  kdg+ +   l++ Pv + +Ge   f +G+  ++
  MMETSP1137-20121227|3285_1 768 AAVEFLPVAVSVTDMSiagSPLLYVNKEFSHATGYDRXEXXGXXXRXLQGPXTCPHAVLEMVESLRNCTFLHTSLLNYCKDGTTFENMLSLQPVADSSGEQSRFcIGVQSKI 879
                 7899**********87322569****************************999999999****************************************9887647877654 PP

>> TIGR00229  sensory_box: PAS domain S-box protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.9   0.0   1.5e-12   3.1e-09       5     114 ..     439     555 ..     436     557 .. 0.87
   2 !   14.2   0.0   3.8e-06    0.0078      26     111 ..     788     873 ..     766     881 .. 0.77

  Alignments for each domain:
  == domain 1    score: 34.9 bits;  conditional E-value: 1.5e-12
   TIGR00229   5 eryrailesspdaiivvdeeG...nilyvNrafeeifGYsaeeliGrnvlelipeedreevrerierrle.gerepvseerrv..krkdGseiwvevsvspird.aggelgvvgivr 114
                 e + a++e+ +++++vvd +     +++vN afe+++GYs+ e++G+n++ l   + + +    + ++l+ +e ++    + v  ++k G+e+   vs+ p+ d +g+ +++vg+++
  MMETSP1137-20121227|3285_1 439 ETFTAMCEELDVSVVVVDARVgglPVTFVNSAFEDLTGYSKHEAVGKNLRFLQGRNTHPVAVGHFVNKLRqPEASGALDVVHVtnYTKXGEEFENCVSLHPVFDpEGRCTYWVGVMH 555
                 6799**************875223589************************88888888887777777776887777777777889***************************9975 PP

  == domain 2    score: 14.2 bits;  conditional E-value: 3.8e-06
   TIGR00229  26 nilyvNrafeeifGYsaeeliGrnvlelipeedr.eevrerierrlegerepvseerrvkrkdGseiwvevsvspird.aggelgvvg 111
                  +lyvN++f   +GY + e  G   + l  +     +v e++e  +      + +  ++ +kdG+++   +s++p+ d +g++  + +
  MMETSP1137-20121227|3285_1 788 PLLYVNKEFSHATGYDRXEXXGXXXRXLQGPXTCpHAVLEMVESLRN-CTFLHTSLLNY-CKDGTTFENMLSLQPVADsSGEQSRFCI 873
                 479************************66555550555555555555.55789999998.******************9998887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1040 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        73  (0.0177962); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.62u 0.13s 00:00:00.75 Elapsed: 00:00:00.78
# Mc/sec: 1759.85
//
Query:       MMETSP1137-20121227|3286_1  [L=374]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (374 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       101  (0.0246221); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.14s 00:00:00.42 Elapsed: 00:00:00.33
# Mc/sec: 1495.88
//
Query:       MMETSP1137-20121227|3287_1  [L=205]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00079   16.9   0.0     0.0018   15.7   0.0    1.6  1  TIGR02521 type_IV_pilW: type IV pilus biogenesis/stability protein PilW
  ------ inclusion threshold ------
      0.012   13.1   0.3       0.08   10.5   0.3    2.1  2  TIGR02552 LcrH_SycD: type III secretion low calcium response chaperone LcrH/SycD


Domain annotation for each model (and alignments):
>> TIGR02521  type_IV_pilW: type IV pilus biogenesis/stability protein PilW
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   8.7e-07    0.0018     111     174 ..      38     108 ..      37     128 .. 0.70

  Alignments for each domain:
  == domain 1    score: 15.7 bits;  conditional E-value: 8.7e-07
   TIGR02521 111 qqkkyeeAeqqfeaAiedpk...Yeqp....arsyeNaglcalkagdtekaekyltralkidpkrpeslle 174
                 ++++ye A  +f+  +++ +   +  +    a++ +N+g c+ ++g+ e a+ y +ra++  +k p+s l+
  MMETSP1137-20121227|3287_1  38 KRGNYEAALDKFTHVYAMMEaenVSGTddtfAAVVSNIGCCLHQLGEPEAAQVYYERAIQXFEKVPVSTLD 108
                 677788888888765544331114333111145568************************99999998875 PP

>> TIGR02552  LcrH_SycD: type III secretion low calcium response chaperone LcrH/SycD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.3   3.9e-05      0.08      29      86 ..      37     103 ..      33     108 .. 0.68
   2 ?   -3.1   0.0      0.64   1.3e+03      96     117 ..     129     150 ..     120     155 .. 0.74

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 3.9e-05
   TIGR02552  29 yqqgkyeeAeklFqlLaal.dpte........akywlgLaaclqalkeyeeAiaaYalaaaldlddp 86 
                 y++g+ye A+  F+  +a+ ++ +        a  +  ++ cl++l+e e A+  Y++a +  ++ p
  MMETSP1137-20121227|3287_1  37 YKRGNYEAALDKFTHVYAMmEAENvsgtddtfAAVVSNIGCCLHQLGEPEAAQVYYERAIQXFEKVP 103
                 8888888888888766544243331121111123345799******************998766666 PP

  == domain 2    score: -3.1 bits;  conditional E-value: 0.64
   TIGR02552  96 llalgekeeAlkaLklaieiae 117
                  l l++k +A + L+++ ++++
  MMETSP1137-20121227|3287_1 129 ELGLDRKPDASQYLDGVGRRQA 150
                 5678888899999998877665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (205 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       107  (0.0260848); expected 82.0 (0.02)
Passed bias filter:                      102  (0.0248659); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.21u 0.13s 00:00:00.34 Elapsed: 00:00:00.39
# Mc/sec: 693.79
//
Query:       MMETSP1137-20121227|3288_1  [L=363]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.6e-24   84.8   0.0    2.5e-24   84.1   0.0    1.3  1  TIGR01830 3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase
    4.1e-20   69.9   0.1    6.7e-20   69.2   0.1    1.3  1  TIGR01963 PHB_DH: 3-hydroxybutyrate dehydrogenase
    7.5e-19   66.0   0.1      1e-18   65.5   0.1    1.2  1  TIGR02415 23BDH: acetoin reductases
    9.5e-17   59.3   0.1    1.5e-16   58.6   0.1    1.2  1  TIGR01829 AcAcCoA_reduct: acetoacetyl-CoA reductase
    1.6e-15   54.9   0.6    2.2e-15   54.5   0.4    1.1  1  TIGR03206 benzo_BadH: 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase
    1.6e-12   44.4   0.3    2.2e-12   44.0   0.2    1.1  1  TIGR02632 RhaD_aldol-ADH: rhamnulose-1-phosphate aldolase/alcohol dehydrogenase
    2.3e-12   44.7   0.2    3.4e-12   44.2   0.1    1.2  1  TIGR01832 kduD: 2-deoxy-D-gluconate 3-dehydrogenase
    8.2e-12   42.9   0.9    2.6e-11   41.3   0.6    1.8  1  TIGR03971 SDR_subfam_1: oxidoreductase, SDR family
      1e-08   32.7   0.6    1.7e-08   32.0   0.4    1.3  1  TIGR01831 fabG_rel: putative 3-oxoacyl-(acyl-carrier-protein) reductase
      5e-08   30.3   1.6    7.7e-08   29.7   1.1    1.3  1  TIGR03325 BphB_TodD: cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase
     0.0014   16.1   0.0      0.002   15.5   0.0    1.3  1  TIGR01289 LPOR: light-dependent protochlorophyllide reductase


Domain annotation for each model (and alignments):
>> TIGR01830  3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.1   0.0   6.6e-27   2.5e-24       2     168 ..      75     245 ..      74     299 .. 0.86

  Alignments for each domain:
  == domain 1    score: 84.1 bits;  conditional E-value: 6.6e-27
   TIGR01830   2 lvtGasrgiGkaiakklakegakvviterskee.kaeelaeelkeagvkaaavkldvsdeeevkelveeveeelgeidilvnnAGitrDklllrmkeedwdevikvnLkgvfnvtkavlkkmikkr..sGriin.issvvgllGnagqanYaasKaGligltkslakElas 168
                 ++tG++ g+G a a +l ++g+ vvi+++++ e ++++++++ + + +++ ++++dvsd+e+v++l + +++++g +   +nnAGi   + +l  ++   ++v+kvnL gv  +t+ +++ m+ ++  + +i n ++s v   G +g + Y a+K Gl  +t sl kE+ +
  MMETSP1137-20121227|3288_1  75 VITGGAGGVGYAYADELVRRGHWVVICDVKDPEpAVQAIRQKHEGSIGRVYGTVTDVSDAESVQALADFAKDKIGIVHYWINNAGINGGRRFLTFRSXVVEAVVKVNLIGVLICTHVAMRLMQSQKgvTSHIFNtVGSGVKGGGTPGYVCYGATKRGLPQMTDSLVKEIEQ 245
                 79*************************998865267889999999999************************************************************************99998855566775478888889************************9854 PP

>> TIGR01963  PHB_DH: 3-hydroxybutyrate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.2   0.1   1.8e-22   6.7e-20       2     187 ..      72     273 ..      71     284 .. 0.86

  Alignments for each domain:
  == domain 1    score: 69.2 bits;  conditional E-value: 1.8e-22
   TIGR01963   2 kvalvtGaasGiglaiakelaaaGakvvvndle..eeaaeaaakeleeaggevlalkadvtkeeeiadlieavaaefgsldiLvnnAGiqhvapieefptekfekiiavnltsafhtiraalpimkkqgwG..riin.iasvhglvasafKsaYvaaKHglvGltKvlAlEvAe...........tgitanaicPgyvrtpL 187
                 k  ++tG a+G+g+a a+el++ G+ vv+ d++  e a +a++++ e + g+v  +++dv+++e+++ l + +++++g +   +nnAGi   +    f     e++++vnl + ++ ++ a++ m+ q+     i n ++s     + +    Y a+K gl  +t +l +E+ +            ++ ++++ Pg v t L
  MMETSP1137-20121227|3288_1  72 KGFVITGGAGGVGYAYADELVRRGHWVVICDVKdpEPAVQAIRQKHEGSIGRVYGTVTDVSDAESVQALADFAKDKIGIVHYWINNAGINGGRRFLTFRSXVVEAVVKVNLIGVLICTHVAMRLMQSQKGVtsHIFNtVGSGVKGGGTPGYVCYGATKRGLPQMTDSLVKEIEQgvqgyekvttpGKVNVHTLSPGMVFTDL 273
                 6679*****************************77778899999999999***************************************************************************98763224788756776677899******************999996542222211111135778888888888887 PP

>> TIGR02415  23BDH: acetoin reductases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.5   0.1   2.7e-21     1e-18       4     170 ..      75     245 ..      72     276 .. 0.83

  Alignments for each domain:
  == domain 1    score: 65.5 bits;  conditional E-value: 2.7e-21
   TIGR02415   4 lvtGaaqGiGkaiaerLakdGfavavadln.eetaketa.kelkekgtkavavkldvsdkseveeaveqaveklGeldvlvnnaGvalvtpileiteeeleklynvnvkgvlfGiqaaaekfkklkhk.Gkiinaasia.gvegspelsaysstkfavrgltqtaakeLak 170
                 ++tG+a G+G a a  L++ G  v+++d++ +e a +++ ++ + + ++    ++dvsd ++v+++ + a++k+G ++  +nnaG++    +l+  +  +e + +vn+ gvl     a++ ++ +k    +i n +       g+p    y +tk  +  +t +  ke+ +
  MMETSP1137-20121227|3288_1  75 VITGGAGGVGYAYADELVRRGHWVVICDVKdPEPAVQAIrQKHEGSIGRVYGTVTDVSDAESVQALADFAKDKIGIVHYWINNAGINGGRRFLTFRSXVVEAVVKVNLIGVLICTHVAMRLMQSQKGVtSHIFNTVGSGvKGGGTPGYVCYGATKRGLPQMTDSLVKEIEQ 245
                 79***************************97455555550555556667778899*****************************************************************9988765438888876543034578999**********9999999999865 PP

>> TIGR01829  AcAcCoA_reduct: acetoacetyl-CoA reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.6   0.1     4e-19   1.5e-16       4     187 ..      75     273 ..      73     300 .. 0.80

  Alignments for each domain:
  == domain 1    score: 58.6 bits;  conditional E-value: 4e-19
   TIGR01829   4 lvtGglgGiGtaickrlakdGykvv.anvapneerakewlqekevegfdvavvkadvssfeeakaavakveaelGpvdvlvnnaGitrdavfkkmtkeqWeevidtnlnsvfnvtrpviegmlerg.f.GriinissvnGlk..GqfGqanysaakaGliGftkalaqegak..kg.........vtvnviaPGyiatem 187
                 ++tGg gG+G a + +l++ G+ vv ++v+  e + +++ q++e +   v+ + +dvs+ e+ +a  +  ++++G v   +nnaGi     f    +   e+v+++nl +v+  t+  +  m+ ++     i n     G+k  G  G + y a+k Gl  +t +l +e  +  +g         v v +++PG + t++
  MMETSP1137-20121227|3288_1  75 VITGGAGGVGYAYADELVRRGHWVViCDVKDPEPAVQAIRQKHEGSIGRVYGTVTDVSDAESVQALADFAKDKIGIVHYWINNAGINGGRRFLTFRSXVVEAVVKVNLIGVLICTHVAMRLMQSQKgVtSHIFNT-VGSGVKggGTPGYVCYGATKRGLPQMTDSLVKEIEQgvQGyekvttpgkVNVHTLSPGMVFTDL 273
                 59*******************98761566667777888888888888899999***************************************************************9999998654241455554.33566622578********************985431111111111122556778888887776 PP

>> TIGR03206  benzo_BadH: 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.5   0.4     6e-18   2.2e-15       3     172 ..      71     245 ..      69     284 .. 0.82

  Alignments for each domain:
  == domain 1    score: 54.5 bits;  conditional E-value: 6e-18
   TIGR03206   3 dkvaivtgggggiggaicrrfaeegakvavldlnae..aaekvaaairekggkaeavavditdrasvdaavaaaeealgpvdvlvnnagwdvlkpflktekaewerliainltgalymhhavlkgmverk..agrivnia.sdaarvgssgeavyaackgglvafsktlarelar 172
                  k  ++tgg+gg+g a    + + g  v + d++    a + + ++   + g+     +d++d +sv+a    a++ +g v   +nnag +  + fl       e ++ +nl g l   h  ++ m  +k  +  i n   s    +g+ g   y a k gl  ++ +l +e  +
  MMETSP1137-20121227|3288_1  71 TKGFVITGGAGGVGYAYADELVRRGHWVVICDVKDPepAVQAIRQKHEGSIGRVYGTVTDVSDAESVQALADFAKDKIGIVHYWINNAGINGGRRFLTFRSXVVEAVVKVNLIGVLICTHVAMRLMQSQKgvTSHIFNTVgSGVKGGGTPGYVCYGATKRGLPQMTDSLVKEIEQ 245
                 5788*****************************8641155555555666668999999**************************************************************999988776633467888651666667889***************9999998754 PP

>> TIGR02632  RhaD_aldol-ADH: rhamnulose-1-phosphate aldolase/alcohol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.0   0.2     6e-15   2.2e-12     410     570 ..      67     229 ..      59     252 .. 0.84

  Alignments for each domain:
  == domain 1    score: 44.0 bits;  conditional E-value: 6e-15
   TIGR02632 410 kelarrvalvtGgasGiGrevarrlvdeGahvvladldaeaaeavaaelvdkf..GadkavalkldvtdeeavkaafaevalayGGvdivvnnaGiavskpleeteleeWdlnldilatGyflvareaarllrkqglggnlvfiasknavvak..knalaysaak 570
                  +++++  ++tGga+G+G + a  lv +G  vv+ d++  +     +++ +k+    +++   + dv d e+v+a  + +  + G v   +nnaGi   + +        +  ++++  G  + ++ a+rl++ q+  ++ +f +   +v  +  ++ + y a+k
  MMETSP1137-20121227|3288_1  67 IQMSTKGFVITGGAGGVGYAYADELVRRGHWVVICDVKDPEP--AVQAIRQKHegSIGRVYGTVTDVSDAESVQALADFAKDKIGIVHYWINNAGINGGRRFLTFRSXVVEAVVKVNLIGVLICTHVAMRLMQSQKGVTSHIFNTVGSGVKGGgtPGYVCYGATK 229
                 47899999****************************976543..3444554442145788889**********99888889999***************************************************999999998888888754226777888777 PP

>> TIGR01832  kduD: 2-deoxy-D-gluconate 3-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.2   0.1     9e-15   3.4e-12       4     173 ..      70     245 ..      67     277 .. 0.81

  Alignments for each domain:
  == domain 1    score: 44.2 bits;  conditional E-value: 9e-15
   TIGR01832   4 eGkvalvtGantGlGqgiavglaeaGadivgvgiselsetqekveal..G..rkflslkadladeeaakalvdeaveeagkidilvnnaGiirredavefsekdwddvlnvnlkavfllsqavakkll.kqGrkgkiiniasllsfqGGir.vpsytasksavaGltkllanewak 173
                   k  ++tG   G+G + a  l + G  +v  ++++++ + +++ ++  G   +++    d++d e+++al d a +++g +   +nnaGi      + f     ++v++vnl  v++ ++ + + +  ++G +++i n        GG     +y a+k+++  +t +l +e  +
  MMETSP1137-20121227|3288_1  70 STKGFVITGGAGGVGYAYADELVRRGHWVVICDVKDPEPAVQAIRQKheGsiGRVYGTVTDVSDAESVQALADFAKDKIGIVHYWINNAGINGGRRFLTFRSXVVEAVVKVNLIGVLICTHVAMRLMQsQKGVTSHIFNTVGSGVKGGGTPgYVCYGATKRGLPQMTDSLVKEIEQ 245
                 567889*******************************99999997642231124555667********************************************************9887777666642579999***97765555555542689***************999754 PP

>> TIGR03971  SDR_subfam_1: oxidoreductase, SDR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.3   0.6   6.9e-14   2.6e-11       6     207 ..      74     267 ..      69     324 .. 0.76

  Alignments for each domain:
  == domain 1    score: 41.3 bits;  conditional E-value: 6.9e-14
   TIGR03971   6 alitGaarGqGraeavrlaaeGadiiaidlceplsdvvtypaatredldetaklvealGrkvlarkadvrkleelravveegveefGrldvvvanaGvlsygrafelseeqWdtvldvnlkGvWktvkavvPalierknGGsiiivssvaglk..alpglahyaaakhGlvgltktlanelaeygir..vnsihPtsvdtamiepe 207
                  +itG a G G a a  l + G  ++ +d+ +p   v     a r+         e+   +v   ++dv + e ++a  + + +++G +   ++naG+ +  r   +++   + v+ vnl Gv  + + ++  +  +k+  s i  +  +g+k  ++pg + y a+k Gl  +t++l +e+ +  ++    +  P  v+ + ++p+
  MMETSP1137-20121227|3288_1  74 FVITGGAGGVGYAYADELVRRGHWVVICDVKDPEPAVQ----AIRQK-------HEGSIGRVYGTVTDVSDAESVQALADFAKDKIGIVHYWINNAGINGGRRFLTFRSXVVEAVVKVNLIGVLICTHVAMRLMQSQKGVTSHIFNTVGSGVKggGTPGYVCYGATKRGLPQMTDSLVKEIEQG-VQgyEKVTTPGKVNVHTLSPG 267
                 579***************************99984333....33333.......3444446888999********************************999999*********************************9999999999999994459**********************98542.210012233443433333333 PP

>> TIGR01831  fabG_rel: putative 3-oxoacyl-(acyl-carrier-protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.0   0.4   4.5e-11   1.7e-08       2     188 ..      75     275 ..      74     299 .. 0.77

  Alignments for each domain:
  == domain 1    score: 32.0 bits;  conditional E-value: 4.5e-11
   TIGR01831   2 lvtgasrgigraialklaadgfeiavhyrsdradaeesvaairaqggnarll..kfdvadrvavrevleadiaehgayygvvlnagiardaafpalseedwdavietnldgfynvihplvmpmirarkggriitlasv.sgvmg..nrgqvnysaakagligatkalavelak.....r......kitvnciapglidtemva 188
                 ++tg + g+g a a +l   g+ + +   +d   a +++ + + +g+ +r+     dv+d ++v+++ +   ++ g  +  + nagi+    f ++     +av++ nl g       + m +++ +kg     + +v sgv g    g v y a+k gl   t +l  e+ +            k+ v  ++pg++ t+++ 
  MMETSP1137-20121227|3288_1  75 VITGGAGGVGYAYADELVRRGHWVVICDVKDPEPAVQAIRQ-KHEGSIGRVYgtVTDVSDAESVQALADFAKDKIGIVHYWINNAGINGGRRFLTFRSXVVEAVVKVNLIGVLICT-HVAMRLMQSQKGVTSHIFNTVgSGVKGggTPGYVCYGATKRGLPQMTDSLVKEIEQgvqgyEkvttpgKVNVHTLSPGMVFTDLLL 275
                 689*******************9988665555444443332.45677777752268*************999****99999******************************98655.5789999999998766565554899862268******************9887754222222122222555677778888777765 PP

>> TIGR03325  BphB_TodD: cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.7   1.1   2.1e-10   7.7e-08       5     174 ..      71     244 ..      67     279 .. 0.72

  Alignments for each domain:
  == domain 1    score: 29.7 bits;  conditional E-value: 2.1e-10
   TIGR03325   5 devvlvtggasglgralvdrfvaegarvavldks..aagleeleaahgdkvvgveg...dvrllddhkeavarcveafgkldtlipnagiwdystalvdipddrideafdevfeinvkgyllavkaalpalvasrg..sviftvsnagfypng..ggalytaakhavvglvkelayela 174
                  +  ++tgga g+g a  d  v  g  v + d    +  +++++++h + +  v g   dv   ++ +  ++   +++g ++ +i+nagi      l        +   + v ++n+ g l++ + a+  + + +g  s if    +g   +g  g + y a+k  +  +   l  e+ 
  MMETSP1137-20121227|3288_1  71 TKGFVITGGAGGVGYAYADELVRRGHWVVICDVKdpEPAVQAIRQKHEGSIGRVYGtvtDVSDAESVQALADFAKDKIGIVHYWINNAGINGGRRFLT-FR----SXVVEAVVKVNLIGVLICTHVAMRLMQSQKGvtSHIFNTVGSGVKGGGtpGYVCYGATKRGLPQMTDSLVKEIE 244
                 556789***********************9996522678********98665555511166666666777788899**************98776664.43....45567799**************9988888873345666666665544433346788999888776666555543 PP

>> TIGR01289  LPOR: light-dependent protochlorophyllide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   5.5e-06     0.002       5      47 ..      73     115 ..      69     188 .. 0.81

  Alignments for each domain:
  == domain 1    score: 15.5 bits;  conditional E-value: 5.5e-06
   TIGR01289   5 tviitgassglglaaakalvekgkwhvvmacrdlekaekaaks 47 
                   +itg + g+g a a  lv +g+w v+   +d e a +a ++
  MMETSP1137-20121227|3288_1  73 GFVITGGAGGVGYAYADELVRRGHWVVICDVKDPEPAVQAIRQ 115
                 569**************************99999988877543 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (363 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       157  (0.038274); expected 82.0 (0.02)
Passed bias filter:                      124  (0.0302292); expected 82.0 (0.02)
Passed Vit filter:                        30  (0.00731351); expected 4.1 (0.001)
Passed Fwd filter:                        11  (0.00268162); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.38u 0.16s 00:00:00.54 Elapsed: 00:00:00.38
# Mc/sec: 1260.84
//
Query:       MMETSP1137-20121227|3289_1  [L=223]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (223 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        70  (0.0170648); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.16s 00:00:00.34 Elapsed: 00:00:00.54
# Mc/sec: 545.07
//
Query:       MMETSP1137-20121227|3290_1  [L=800]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (800 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       167  (0.0407118); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.50u 0.18s 00:00:00.68 Elapsed: 00:00:00.53
# Mc/sec: 1992.29
//
Query:       MMETSP1137-20121227|3291_1  [L=150]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-41  139.5   0.2    1.7e-41  139.2   0.1    1.0  1  TIGR00357 TIGR00357: methionine-R-sulfoxide reductase


Domain annotation for each model (and alignments):
>> TIGR00357  TIGR00357: methionine-R-sulfoxide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  139.2   0.1   4.2e-45   1.7e-41       2     126 ..       7     134 ..       6     142 .. 0.93

  Alignments for each domain:
  == domain 1    score: 139.2 bits;  conditional E-value: 4.2e-45
   TIGR00357   2 ksdeelkkkltklqyevtqnkgtekpftneykk...nkeeGiyvditsgeplfssedkfdsgcGWPsftkpiseeavkyekdeslgmirtevrskradahlGhvfddGP.ektGkryCinsaalkfipl 126
                 ks+ee+k+ l+  +y+v++ kgte++ t+ey+k   +  eG + +  +g+pl+s++ kf+sgcGWP+f k    ++v +e d+s+gm r+e+ ++++d+hlGhvf+      t +r+C+ns++++f++ 
  MMETSP1137-20121227|3291_1   7 KSNEEWKQILSAKEYQVLRAKGTEPAGTGEYDKfypKAGEGYFACRGCGNPLYSAQAKFNSGCGWPAFDKCY-ANSVSTEVDNSFGMRRVEIMCAKCDGHLGHVFEGEHlTSTNERHCVNSVSVRFVKG 134
                 89****************************9883335678******************************98.99******************************9888899**************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (150 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        86  (0.0209654); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.17u 0.11s 00:00:00.28 Elapsed: 00:00:00.51
# Mc/sec: 388.20
//
Query:       MMETSP1137-20121227|3292_1  [L=341]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.3e-40  136.1   0.0    2.6e-26   90.1   0.0    2.0  2  TIGR02881 spore_V_K: stage V sporulation protein K
    3.7e-35  119.4   0.0    1.6e-20   71.4   0.0    2.0  2  TIGR02880 cbbX_cfxQ: CbbX protein
    4.5e-33  112.4   1.9    4.4e-21   72.9   0.0    2.6  2  TIGR03922 T7SS_EccA: type VII secretion AAA-ATPase EccA
    0.00047   17.1   0.0       0.02   11.8   0.0    2.5  2  TIGR00635 ruvB: Holliday junction DNA helicase RuvB
     0.0084   13.2   0.2      0.021   11.9   0.1    1.6  2  TIGR02397 dnaX_nterm: DNA polymerase III, subunit gamma and tau
  ------ inclusion threshold ------
      0.021   11.5   0.0       0.35    7.5   0.0    2.1  2  TIGR02928 TIGR02928: orc1/cdc6 family replication initiation protein


Domain annotation for each model (and alignments):
>> TIGR02881  spore_V_K: stage V sporulation protein K
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.1   0.0   4.1e-15   2.8e-12     132     249 ..      44     161 ..      32     167 .. 0.84
   2 !   90.1   0.0   3.7e-29   2.6e-26       5     163 ..     185     341 .]     182     341 .] 0.89

  Alignments for each domain:
  == domain 1    score: 44.1 bits;  conditional E-value: 4.1e-15
   TIGR02881 132 tlvkemedkreelvlilaGysdemdy.flslnPGlksrfpisldfpdytveelleiakkmveereyklteeakaklreklakvksasekefsnarlvrnliekairrqavrllkksdvs 249
                 +l+  +e+ r +l +i+aGy+++++  +++ n G+  rf  +l+f+dyt +el +i +++   +++  +++  a +  + +       + f+na +vrnl e a  r   r l+  +++
  MMETSP1137-20121227|3292_1  44 QLLDVAEEWRTDLTIIIAGYKEDIETkLFDYNAGFSRRFNYTLTFEDYTETELATIFERLCAWHKWPPSDKNVALVAARRVGRG-RGLRGFGNAGAVRNLFEMAYNRALERDLNACSLT 161
                 5677899*****************9636799******************************99999988877766665554444.47899*************9988777777666555 PP

  == domain 2    score: 90.1 bits;  conditional E-value: 3.7e-29
   TIGR02881   5 leklvGleevkelikeiyalilinekrkeeglk.aekqvlhmifkGnPGtGkttvarllaklfkelnvlskGhlieveradlvGeyiGhtaqktrevikkalGGvlfideayslarGGekdfGkeaidtlvkemedkr.eelvlilaGysdemdy.flslnP 163
                 l ++ G+e vk+ ++e+  l++ n  r+ +g    +  +l  +f GnPGtGkttvarl +++++  + l+ G     + +dl+G  +G+t +kt +++ ++ G vl+ideay l       +G+eaid +v ++     e++ ++l Gy+++++  f ++nP
  MMETSP1137-20121227|3292_1 185 LMEMTGIESVKKEMQELLKLAATNYDREVRGESpFSVGSLNRVFLGNPGTGKTTVARLYGRILN--GFLTDGSCELKQPSDLLGSTVGETPKKTAALLARCAGKVLIIDEAYGLNS---SIYGREAIDEIVGKVHGAAgENIAVVLIGYEKQIKKmFRETNP 341
                 67899********************99998876257789************************8..579***9988899***********************************85...57**********88887651678899******99761556676 PP

>> TIGR02880  cbbX_cfxQ: CbbX protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.2   0.0   1.1e-15   7.5e-13     149     263 ..      44     160 ..      32     166 .. 0.87
   2 !   71.4   0.0   2.4e-23   1.6e-20      23     180 ..     187     341 .]     174     341 .] 0.90

  Alignments for each domain:
  == domain 1    score: 46.2 bits;  conditional E-value: 1.1e-15
   TIGR02880 149 illqvmenqrddlvvilagykdrmd.sffesnpglssrvahhvdfpdyseeellaiaellleeqqyrlsae.aeealaeyialrrkqpffanarsirnaldrarlrqanrllaaadk 263
                  ll+v e+ r+dl +i+agyk+ ++ ++f+ n g+s r    + f dy+e el +i e l   +++  s++    + a+ + + r    f na ++rn  + a  r  +r l+a + 
  MMETSP1137-20121227|3292_1  44 QLLDVAEEWRTDLTIIIAGYKEDIEtKLFDYNAGFSRRFNYTLTFEDYTETELATIFERLCAWHKWPPSDKnVALVAARRVGRGRGLRGFGNAGAVRNLFEMAYNRALERDLNACSL 160
                 599******************9986379**********************************9999876651566778899999*****************9999999998887664 PP

  == domain 2    score: 71.4 bits;  conditional E-value: 2.4e-23
   TIGR02880  23 eliglkpvktrireiaalllverlrqklglas.aapslhmsftgnpgtgkttvalrmakilhrlgyvrkghlvsvtrddlvgqyightapktkevlkramggvlfideayylyrpdnerdygqeai.eillqvmenqrddlvvilagykdrmdsff.esnp 180
                 e+ g++ vk+ ++e+  l   +  r+ +g +  +  sl   f gnpgtgkttva    +il   g++  g        dl+g  +g t  kt  +l r  g vl+ideay l    n   yg+eai ei+ +v     +++ v+l gy+++++++f e+np
  MMETSP1137-20121227|3292_1 187 EMTGIESVKKEMQELLKLAATNYDREVRGESPfSVGSLNRVFLGNPGTGKTTVARLYGRILN--GFLTDGSCELKQPSDLLGSTVGETPKKTAALLARCAGKVLIIDEAYGL----NSSIYGREAIdEIVGKVHGAAGENIAVVLIGYEKQIKKMFrETNP 341
                 7899**********99999999999988877526689***********************97..9********9************************************99....7889******66888999999**************9988724555 PP

>> TIGR03922  T7SS_EccA: type VII secretion AAA-ATPase EccA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.3   0.4     2e-13   1.3e-10     402     464 ..      41     104 ..      28     165 .. 0.88
   2 !   72.9   0.0   6.5e-24   4.4e-21     273     432 ..     183     336 ..     171     341 .] 0.90

  Alignments for each domain:
  == domain 1    score: 38.3 bits;  conditional E-value: 2e-13
   TIGR03922 402 aidtLLarlEndRdrlvviiAGYekdlD.klLevneGLrsRFtrkieFesYspdElveiakrma 464
                 +  +LL   E+ R +l +iiAGY++d++ kl + n G  +RF+ ++ Fe Y+  El  i +r+ 
  MMETSP1137-20121227|3292_1  41 VASQLLDVAEEWRTDLTIIIAGYKEDIEtKLFDYNAGFSRRFNYTLTFEDYTETELATIFERLC 104
                 457899999******************85899*************************9988765 PP

  == domain 2    score: 72.9 bits;  conditional E-value: 6.5e-24
   TIGR03922 273 aeLakqiGlervkeqvaalkssvevalvRaerG.lavaqrskHlllaGPPGtGkttiArvvakiyaGlgvlrkpevrEvsRadligeyigeseaktnelidkaLggvlFlDEayaLvekrdgakddfGleaidtLLarlE.ndRdrlvviiAGYekdlDklL 432
                   L ++ G+e vk++++ l +  + +  R+ rG  +  + s   +++G PGtGktt+Ar  ++i+ G+  l   +    + +dl+g  +ge+ +kt +l+ +  g+vl +DEay L +        +G eaid ++ ++  +  +++ v+  GYek++ k+ 
  MMETSP1137-20121227|3292_1 183 DXLMEMTGIESVKKEMQELLKLAATNYDREVRGeSPFSVGSLNRVFLGNPGTGKTTVARLYGRILNGF--LTDGSCELKQPSDLLGSTVGETPKKTAALLARCAGKVLIIDEAYGLNSS------IYGREAIDEIVGKVHgAAGENIAVVLIGYEKQIKKMF 336
                 57899***************************9447899999************************96..667777667889**********************************998......9**********999735678999***********986 PP

>> TIGR00635  ruvB: Holliday junction DNA helicase RuvB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.0     0.016        11     146     190 ..      78     122 ..      68     165 .. 0.79
   2 !   11.8   0.0   2.9e-05      0.02      34      75 ..     227     267 ..     184     306 .. 0.67

  Alignments for each domain:
  == domain 1    score: 2.8 bits;  conditional E-value: 0.016
   TIGR00635 146 LrdrfgiverlefYseeeleeivkrsaklleleieeeaaleiarr 190
                    rf  +  +e Y+e+el++i +r     +   ++++++ +a r
  MMETSP1137-20121227|3292_1  78 FSRRFNYTLTFEDYTETELATIFERLCAWHKWPPSDKNVALVAAR 122
                 5689*******************9988777766666666666655 PP

  == domain 2    score: 11.8 bits;  conditional E-value: 2.9e-05
   TIGR00635  34 llyGPPGlGkttlakiiakelgvklkitsgpalekpgDlaai 75 
                 ++ G PG Gktt+a++  + l+  l    + +l++p+Dl++ 
  MMETSP1137-20121227|3292_1 227 VFLGNPGTGKTTVARLYGRILNGFLT-DGSCELKQPSDLLGS 267
                 467**************999987664.556789999999753 PP

>> TIGR02397  dnaX_nterm: DNA polymerase III, subunit gamma and tau
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.9   0.1   3.1e-05     0.021      40      61 ..     227     248 ..     224     258 .. 0.91
   2 ?   -3.6   0.0       1.6   1.1e+03     119     131 ..     286     298 ..     284     301 .. 0.83

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 3.1e-05
   TIGR02397  40 LfsGprGvGKTsiArilAkalN 61 
                 +f G+ G+GKT++Ar+  + lN
  MMETSP1137-20121227|3292_1 227 VFLGNPGTGKTTVARLYGRILN 248
                 699**************99999 PP

  == domain 2    score: -3.6 bits;  conditional E-value: 1.6
   TIGR02397 119 kvYiiDEvhmLsk 131
                 kv iiDE+  L +
  MMETSP1137-20121227|3292_1 286 KVLIIDEAYGLNS 298
                 899****988765 PP

>> TIGR02928  TIGR02928: orc1/cdc6 family replication initiation protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.0     0.032        22     194     210 ..      85     101 ..      79     126 .. 0.83
   2 ?    7.5   0.0   0.00051      0.35      42      65 ..     225     248 ..     192     259 .. 0.75

  Alignments for each domain:
  == domain 1    score: 1.6 bits;  conditional E-value: 0.032
   TIGR02928 194 eivFppYdaeeLrdILe 210
                  ++F++Y+++eL++I e
  MMETSP1137-20121227|3292_1  85 TLTFEDYTETELATIFE 101
                 579************87 PP

  == domain 2    score: 7.5 bits;  conditional E-value: 0.00051
   TIGR02928  42 nvliyGktGtGKtavtkkvlkele 65 
                 n +  G++GtGKt+v++   + l+
  MMETSP1137-20121227|3292_1 225 NRVFLGNPGTGKTTVARLYGRILN 248
                 44778***********98777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (341 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       183  (0.0446124); expected 82.0 (0.02)
Passed bias filter:                      172  (0.0419308); expected 82.0 (0.02)
Passed Vit filter:                        33  (0.00804486); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.37u 0.14s 00:00:00.51 Elapsed: 00:00:00.46
# Mc/sec: 978.44
//
Query:       MMETSP1137-20121227|3293_1  [L=38]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (38 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        29  (0.00706972); expected 82.0 (0.02)
Passed bias filter:                       28  (0.00682594); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.15s 00:00:00.25 Elapsed: 00:00:00.47
# Mc/sec: 106.71
//
Query:       MMETSP1137-20121227|3294_1  [L=701]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (701 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.11s 00:00:00.56 Elapsed: 00:00:00.56
# Mc/sec: 1652.22
//
Query:       MMETSP1137-20121227|3295_1  [L=277]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0025   13.8   0.2      0.045    9.6   0.0    2.2  2  TIGR00870 trp: transient-receptor-potential calcium channel protein


Domain annotation for each model (and alignments):
>> TIGR00870  trp: transient-receptor-potential calcium channel protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.6   0.0   1.1e-05     0.045     130     159 ..      92     121 ..      89     127 .. 0.89
   2 !    1.7   0.0    0.0027        11     130     156 ..     125     151 ..     120     171 .. 0.84

  Alignments for each domain:
  == domain 1    score: 9.6 bits;  conditional E-value: 1.1e-05
   TIGR00870 130 kgitalilAihkqnyeivklLlekgasvea 159
                 +g+t+l++A+   ++e  +lL++ ga+  +
  MMETSP1137-20121227|3295_1  92 AGHTPLMIAARFGQLEAASLLVQHGADTDV 121
                 69************************9765 PP

  == domain 2    score: 1.7 bits;  conditional E-value: 0.0027
   TIGR00870 130 kgitalilAihkqnyeivklLlekgas 156
                  g tal+ A+ +    iv++Ll  ga+
  MMETSP1137-20121227|3295_1 125 SGDTALMYAASEGHAIIVQMLLRFGAN 151
                 689*******************99997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (277 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        36  (0.00877621); expected 82.0 (0.02)
Passed bias filter:                       31  (0.00755729); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.24u 0.15s 00:00:00.39 Elapsed: 00:00:00.33
# Mc/sec: 1107.91
//
Query:       MMETSP1137-20121227|3296_1  [L=96]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (96 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        63  (0.0153584); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.50
# Mc/sec: 253.42
//
Query:       MMETSP1137-20121227|3297_1  [L=708]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (708 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       115  (0.0280351); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.14s 00:00:00.59 Elapsed: 00:00:00.61
# Mc/sec: 1531.94
//
Query:       MMETSP1137-20121227|3298_1  [L=537]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.2e-13   44.9   2.8    0.00012   18.1   0.5    3.3  3  TIGR00805 oat: sodium-independent organic anion transporter
    1.3e-09   35.3  19.0    2.1e-06   24.8   6.1    2.6  2  TIGR00893 2A0114: D-galactonate transporter
    2.9e-06   24.0  12.8    7.1e-06   22.7   5.8    2.1  2  TIGR00879 SP: MFS transporter, sugar porter (SP) family
    1.8e-05   21.9  16.2    0.00038   17.5   5.0    2.8  2  TIGR02332 HpaX: 4-hydroxyphenylacetate permease
    4.3e-05   20.5  17.6     0.0026   14.7   4.2    2.9  4  TIGR00881 2A0104: phosphoglycerate transporter family protein
     0.0019   16.2   6.9     0.0019   16.2   4.8    4.4  5  TIGR00880 2_A_01_02: multidrug resistance protein


Domain annotation for each model (and alignments):
>> TIGR00805  oat: sodium-independent organic anion transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.5   1.7e-07   0.00012     170     227 ..     131     188 ..     127     195 .. 0.92
   2 !    8.4   0.0   0.00015     0.099     320     399 ..     275     355 ..     248     366 .. 0.86
   3 !   16.2   0.1   6.5e-07   0.00045     531     587 ..     399     454 ..     385     472 .. 0.81

  Alignments for each domain:
  == domain 1    score: 18.1 bits;  conditional E-value: 1.7e-07
   TIGR00805 170 lmfllllvaqllrGiGatplftlGisyiddfakkknsplyigilesiavlGPiigfll 227
                 l f+++l a+ l G+G++  + +  +y++dfa  +  +ly++i++++   G +ig+ l
  MMETSP1137-20121227|3298_1 131 LSFYFFLGARSLSGVGEAAFQCIVPPYVEDFAPAQYKSLYLAIFFTAIPTGTAIGLPL 188
                 68999*************************************************9855 PP

  == domain 2    score: 8.4 bits;  conditional E-value: 0.00015
   TIGR00805 320 lkiikrlltnklfmlvvlaqvidvlvvkglitFlpKyLEkqyg.vssakanlligvvnvpaaglgvligGlimkkfklnvk 399
                 +     l+  +++ml+ l  + +   v+gl+tF p  L      vs+  a+l  g+v+    + g+ +gG ++ ++  +++
  MMETSP1137-20121227|3298_1 275 FAQAATLVLSPTYMLICLGYASQTASVIGLSTFGPLILLSLGDfVSQEAASLNFGLVVALGGVFGTPFGGWLSDRLIKKIR 355
                 5566789999*************************9887765436777888999*****************9999866555 PP

  == domain 3    score: 16.2 bits;  conditional E-value: 6.5e-07
   TIGR00805 531 vailsfiasltavplymvlLRvvkseerslalglqallirvlatiPapilfGlliDv 587
                 +  + f+ s ta +  +++L +v++e+r +al + al+i   + +Pap++ G+l D+
  MMETSP1137-20121227|3298_1 399 FFNVFFVFSTTAGVNRSIML-TVPTETRAFALAMLALVIHACGDVPAPVIIGALKDA 454
                 33344666666666666666.9*******************************9986 PP

>> TIGR00893  2A0114: D-galactonate transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.8   6.1     3e-09   2.1e-06      27     141 ..      71     192 ..      21     194 .. 0.90
   2 !   15.6   1.8   1.9e-06    0.0013     209     373 ..     279     454 ..     271     464 .. 0.73

  Alignments for each domain:
  == domain 1    score: 24.8 bits;  conditional E-value: 3e-09
   TIGR00893  27 saaqyglvfsafsigyvlfqlpggllldriGakktlavaivlWglftllqafat.......alvslivlRvllGlaEaplfPgiikivasWFPakeratavsifnsaqalgaiiggplvgwi 141
                 +++ +gl +saf   y++  +  g l++  +    la  +++W   +++ ++a+       ++  ++ +R l G+ Ea++   ++ +v  + Pa+ ++   +if+ a++ g++ig pl++++
  MMETSP1137-20121227|3298_1  71 QSVYLGLLTSAFVSCYAIASIILGELVRHCSKFRLLAGGLMVWICALVMSGIAFwlgsaplSFYFFLGARSLSGVGEAAFQCIVPPYVEDFAPAQYKSLYLAIFFTAIPTGTAIGLPLAVGA 192
                 566789*************************999*****************99999**7777777889**************************************************9875 PP

  == domain 2    score: 15.6 bits;  conditional E-value: 1.9e-06
   TIGR00893 209 kelLkdrrviglalgqflvnillyffltwfplylkqerglslleagl..laslpaivgfvgmvlggilsdlllkkg...kslvlarktaiiaglvlsllliatnlva......skiaalalvalaffgkglaailwavisdvlskeiagltgGlinllG.nlagivgPivigaiaat 373
                   l+ +++ +++ lg+++ ++ +++++t+ pl+l + + + + ea+   ++++ a+ g+ g + gg+lsd l kk    +s+ +a  +a     ++ ll  a  l          ++++ + ++ f+++  a +  + i  +++ e+ + + +++ l+  + + + +P +iga++++
  MMETSP1137-20121227|3298_1 279 ATLVLSPTYMLICLGYASQTASVIGLSTFGPLILLSLGDFVSQEAASlnFGLVVALGGVFGTPFGGWLSDRLIKKIrrgRSVGWASSAANAHDEASNLLRWARRLRRegqgapLGLLRVIFFNVFFVFSTTAGVNRS-IMLTVPTETRAFALAMLALVIhACGDVPAPVIIGALKDA 454
                 5667789999************************9877766666654116799*******************99877779999999999888777777777777555444411223334444444444433333333.445678888888888887777677888888888888775 PP

>> TIGR00879  SP: MFS transporter, sugar porter (SP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.7   5.8     1e-08   7.1e-06      42     204 ..      16     182 ..       3     197 .. 0.77
   2 !    3.3   0.1    0.0077       5.3      55     129 ..     278     353 ..     253     360 .. 0.77

  Alignments for each domain:
  == domain 1    score: 22.7 bits;  conditional E-value: 1e-08
   TIGR00879  42 lltpallgsnyvfvallsllaalagllfgYdtavisaalallkfefkftsnlsd..asssqwglvvsillvGgligalfagylsdrfgrkkslliiallfvigailsllaatals.....vevlivgRvllGigvGiasalvPlYisEiApkalRgalvslyqlaitfGi 204
                 +  +  ++ + v +a++++l+a+  +l   d +vis+a  +++     t n +     s+++gl++s+++ + +i ++++g l++    k +ll+++l++ i a++++ +a+ l+     +  +  +R l+G g   ++++vP Y+  +Ap++       ++ +ai +G 
  MMETSP1137-20121227|3298_1  16 VTSLIAAKDQMVAAAVMAFLVAIN-MLNFIDRGVISGAPVQFGGFVARTLN-KPpsQQSVYLGLLTSAFVSCYAIASIILGELVRHC-SKFRLLAGGLMVWICALVMSGIAFWLGsaplsFYFFLGARSLSGVGEAAFQCIVPPYVEDFAPAQYKSLYLAIFFTAIPTGT 182
                 333333444555666667777777.4444599****999998876666644.446999999*******************9888765.5777888888888888888788887778898899999***************************998888888888887776 PP

  == domain 2    score: 3.3 bits;  conditional E-value: 0.0077
   TIGR00879  55 vallsllaalagllfgYdtavisaalallkfefkftsnlsd.....asssqwglvvsillvGgligalfagylsdrfgrk 129
                 +a+l+l  ++ +++ gY +++ s +  ++   + + s l d     a+s+  glvv+   +Gg++g  f+g+lsdr+ +k
  MMETSP1137-20121227|3298_1 278 AATLVLSPTYMLICLGYASQTASVIGLSTFGPLILLS-LGDfvsqeAASLNFGLVVA---LGGVFGTPFGGWLSDRLIKK 353
                 6777888888899999998888877766666666553.3444544688888888886...79999999999999998766 PP

>> TIGR02332  HpaX: 4-hydroxyphenylacetate permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   5.0   5.5e-07   0.00038      10     151 ..      32     188 ..      24     201 .. 0.82
   2 !    7.8   1.1    0.0005      0.34     239     404 ..     282     463 ..     267     467 .. 0.61

  Alignments for each domain:
  == domain 1    score: 17.5 bits;  conditional E-value: 5.5e-07
   TIGR02332  10 ivflfvlfvfsfldrini........gfagltmgkdlglsatmfglaatlfyvayvifgipsnimlakvgarrwiatimvlwgiast....atmfatspeslyll...rilvgiaeagflpgillyltfwfpayfraranalfmvampvttalglil 151
                 + fl+ + ++ f+dr  i        gf   t+ k     +  +gl ++ f  +y i  i    ++      r +a+ +++w  a      a  + ++p s+y +   r l g+ ea f   +  y+  + pa +++   a+f+ a+p  ta+gl l
  MMETSP1137-20121227|3298_1  32 MAFLVAINMLNFIDRGVIsgapvqfgGFVARTLNKPPSQQSVYLGLLTSAFVSCYAIASIILGELVRHCSKFRLLAGGLMVWICALVmsgiAFWLGSAPLSFYFFlgaRSLSGVGEAAFQCIVPPYVEDFAPAQYKSLYLAIFFTAIPTGTAIGLPL 188
                 6688888888888886653333333467777888999999*********************9999************99999876441111344568999*998546699******************************************99855 PP

  == domain 2    score: 7.8 bits;  conditional E-value: 0.0005
   TIGR02332 239 vltpvvmlytlayfcltntlsaisiwtpqilqsfntgss....nitigllaavpqictilgmvywsrrsdrl..kerkkhtilpylfaa.....agwllasatd.hsliqllsiimastgsfsamaifwttp..dqvisl....raravaiavinav.gnvgsalsplligilkdltgsfssglw 404
                 vl+p+ ml  l y   t ++  +s + p il s+ +  s     +  gl+ a   +  ++g  +    sdrl  k r+  ++     aa     a  ll  a       q + + +  +  f+ + +f tt   +++i l    ++ra a+a++  v    g   +p++ig lkd+       +w
  MMETSP1137-20121227|3298_1 282 VLSPTYMLICLGYASQTASVIGLSTFGPLILLSLGDFVSqeaaSLNFGLVVA---LGGVFGTPFGGWLSDRLikKIRRGRSVGWASSAAnahdeASNLLRWARRlRREGQGAPLGLLRVIFFNVFFVFSTTAgvNRSIMLtvptETRAFALAMLALViHACGDVPAPVIIGALKDALAPNCNIVW 463
                 89999************999999*******9997655440000555566555...5667777777777888521334444433333333111112334433332122234444555556667777777777522455555223357999998877551456777789999999999776555555 PP

>> TIGR00881  2A0104: phosphoglycerate transporter family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.3       1.2   7.9e+02     304     323 ..      19      35 ..       5      47 .. 0.37
   2 !   14.7   4.2   3.8e-06    0.0026      32     139 ..      75     189 ..      69     196 .. 0.89
   3 !   13.9   0.0   6.6e-06    0.0045     208     286 ..     277     357 ..     240     366 .. 0.84
   4 ?   -3.2   0.2      0.99   6.8e+02      69     110 ..     396     418 ..     391     451 .. 0.48

  Alignments for each domain:
  == domain 1    score: -3.4 bits;  conditional E-value: 1.2
   TIGR00881 304 livaanklvvlillfvlGfl 323
                 li+a++  +  ++++v++fl
  MMETSP1137-20121227|3298_1  19 LIAAKD-QM--VAAAVMAFL 35 
                 222222.22..122222222 PP

  == domain 2    score: 14.7 bits;  conditional E-value: 3.8e-06
   TIGR00881  32 lGlllsafsiaYgiskfvvgvvsDrvsarvflaigLil..vaivnlflgfss.....slwvliallalnGlfqglgwppcgrlltkwfsrserGtvvaiwnishnvggallpplv 139
                 lGll+saf   Y+i+ ++ g +   +s+  +la gL+   +a+v+ +++f       s+  ++ ++ l+G+ +++   ++  ++  + + +     +ai+ ++   g a+  pl+
  MMETSP1137-20121227|3298_1  75 LGLLTSAFVSCYAIASIILGELVRHCSKFRLLAGGLMVwiCALVMSGIAFWLgsaplSFYFFLGARSLSGVGEAAFQCIVPPYVEDFAPAQYKSLYLAIFFTAIPTGTAIGLPLA 189
                 9********************************999862268888888887788999*********************9*99********999999****999999999887754 PP

  == domain 3    score: 13.9 bits;  conditional E-value: 6.6e-06
   TIGR00881 208 llqyvlknkvlwlislvnvfvyvvrtgiedWvplYltqekgl.skekasvav.tlfelaglvGtllaGwlsDklfkgrrap 286
                  + ++++++  +li+l++       +g+ + +pl l+    + s+e as  + ++  l+g+ Gt   GwlsD+l+k+ r+ 
  MMETSP1137-20121227|3298_1 277 QAATLVLSPTYMLICLGYASQTASVIGLSTFGPLILLSLGDFvSQEAASLNFgLVVALGGVFGTPFGGWLSDRLIKKIRRG 357
                 4578999*************99999*********999987762555555544267899***************99988765 PP

  == domain 4    score: -3.2 bits;  conditional E-value: 0.99
   TIGR00881  69 lvaivnlflgfssslwvliallalnGlfqglgwppcgrlltk 110
                  v   n+f++fs+                      ++r +  
  MMETSP1137-20121227|3298_1 396 RVIFFNVFFVFST-------------------TAGVNRSIML 418
                 4444445555544...................3333333333 PP

>> TIGR00880  2_A_01_02: multidrug resistance protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.8      0.42   2.8e+02      64      97 ..       4      39 ..       1      68 [. 0.60
   2 !   16.2   4.8   2.8e-06    0.0019       2     106 ..      81     188 ..      76     198 .. 0.86
   3 !    8.3   0.7   0.00076      0.52      40     115 ..     276     351 ..     270     355 .. 0.75
   4 ?   -0.6   0.2       0.4   2.7e+02      70     106 ..     407     447 ..     393     457 .. 0.52
   5 ?   -3.1   0.7       2.5   1.7e+03     112     127 ..     502     517 ..     492     522 .. 0.69

  Alignments for each domain:
  == domain 1    score: -0.6 bits;  conditional E-value: 0.42
   TIGR00880 64 gaaaalvagaaliadiikee..ersvalgllsagia 97
                 a +a+++ ++++ ++i+++  ++++a++ ++++i+
  MMETSP1137-20121227|3298_1  4 DATIAVTTSNTIVTSLIAAKdqMVAAAVMAFLVAIN 39
                555666666777777666662233333333333333 PP

  == domain 2    score: 16.2 bits;  conditional E-value: 2.8e-06
   TIGR00880   2 lllagyAlgqlvvsplsglltdrvGrkpvllvglfifvlsqllfals.......snitvliiarilqGfgaaaalvagaaliadiikeeersvalgllsagialgpilGpll 106
                  ++  yA++ ++++ l+       ++  +l +gl++ + + +++ ++        ++  ++ ar l+G+g aa+  ++  ++ d+++++++s  l+++ ++i +g  +G++l
  MMETSP1137-20121227|3298_1  81 AFVSCYAIASIILGELVR----HCSKFRLLAGGLMVWICALVMSGIAfwlgsapLSFYFFLGARSLSGVGEAAFQCIVPPYVEDFAPAQYKSLYLAIFFTAIPTGTAIGLPL 188
                 567777777777777777....8889899999988888777777777777777778888999***********************************************997 PP

  == domain 3    score: 8.3 bits;  conditional E-value: 0.00076
   TIGR00880  40 lsqllfalssnitvlii...arilqGfgaaaalvagaaliadiikeeersvalgllsagialgpilGpllGavlaqalg 115
                 + ++ ++ls ++ ++++   + + + +g +++ + +  ++ d++++e  s ++gl++   alg ++G ++G++l + l 
  MMETSP1137-20121227|3298_1 276 AQAATLVLSPTYMLICLgyaSQTASVIGLSTFGPLILLSLGDFVSQEAASLNFGLVV---ALGGVFGTPFGGWLSDRLI 351
                 455666666666666541114455668889999999999999999999999999875...79************98765 PP

  == domain 4    score: -0.6 bits;  conditional E-value: 0.4
   TIGR00880  70 vagaaliadi...ikeeersvalgllsagi.algpilGpll 106
                 +++a++ ++i   +++e+r+ al++l+++i a+g + +p++
  MMETSP1137-20121227|3298_1 407 STTAGVNRSImltVPTETRAFALAMLALVIhACGDVPAPVI 447
                 33333333331114555555555554443325666666665 PP

  == domain 5    score: -3.1 bits;  conditional E-value: 2.5
   TIGR00880 112 qalgwralflilalla 127
                  ++gw +l+++l++  
  MMETSP1137-20121227|3298_1 502 LWMGWAILLWALCWCL 517
                 4788988888888764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (537 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       174  (0.0424183); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.46u 0.17s 00:00:00.63 Elapsed: 00:00:01.14
# Mc/sec: 616.33
//
Query:       MMETSP1137-20121227|3299_1  [L=544]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (544 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       115  (0.0280351); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.19s 00:00:00.55 Elapsed: 00:00:00.49
# Mc/sec: 1465.35
//
Query:       MMETSP1137-20121227|3300_1  [L=88]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (88 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        81  (0.0197465); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.25
# Mc/sec: 464.60
//
Query:       MMETSP1137-20121227|3301_1  [L=142]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.023   11.7   0.1      0.027   11.5   0.1    1.1  1  TIGR02524 dot_icm_DotB: Dot/Icm secretion system ATPase DotB


Domain annotation for each model (and alignments):
>> TIGR02524  dot_icm_DotB: Dot/Icm secretion system ATPase DotB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.1   6.7e-06     0.027     226     274 ..      56     105 ..      43     119 .. 0.83

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 6.7e-06
   TIGR02524 226 tisavleaaltghpvyttlhssgvaetirrlvtsfsaeerl.grtidile 274
                 ++s   e a    pv   l +  v +t+rrlv+  ++ee +  rt +   
  MMETSP1137-20121227|3301_1  56 AVSRLGEIACKAAPVGCVLLADAVGDTVRRLVGREASEETIeARTAERAR 105
                 567778999999***************************99447766555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (142 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       106  (0.0258411); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.17u 0.11s 00:00:00.28 Elapsed: 00:00:00.28
# Mc/sec: 669.37
//
Query:       MMETSP1137-20121227|3303_1  [L=212]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (212 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       182  (0.0443686); expected 82.0 (0.02)
Passed bias filter:                      126  (0.0307167); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.19s 00:00:00.40 Elapsed: 00:00:00.42
# Mc/sec: 666.23
//
Query:       MMETSP1137-20121227|3305_1  [L=411]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        4.4    5.8   8.0      0.096   11.0   0.3    2.4  3  TIGR01409 TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence


Domain annotation for each model (and alignments):
>> TIGR01409  TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.2       0.7   2.9e+03      11      19 ..       4       9 ..       1      17 [. 0.47
   2 ?   11.0   0.3   2.3e-05     0.096       3      26 ..      52      75 ..      50      78 .. 0.85
   3 ?   -3.1   0.1      0.69   2.8e+03      11      15 ..     358     362 ..     351     367 .. 0.58

  Alignments for each domain:
  == domain 1    score: -3.1 bits;  conditional E-value: 0.7
   TIGR01409 11 aaagaaagl 19
                +   a+a+l
  MMETSP1137-20121227|3305_1  4 S---ASAAL 9 
                2...33333 PP

  == domain 2    score: 11.0 bits;  conditional E-value: 2.3e-05
   TIGR01409  3 RRdFLkaaaaagaaaglglllpsp 26
                RR+ +++a  a+aaa+l+++lp  
  MMETSP1137-20121227|3305_1 52 RRQVMQTALSATAAAALFNVLPES 75
                ********9999999998877765 PP

  == domain 3    score: -3.1 bits;  conditional E-value: 0.69
   TIGR01409  11 aaaga 15 
                 a++g+
  MMETSP1137-20121227|3305_1 358 AVGGG 362
                 22332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (411 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        89  (0.0216967); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.29u 0.17s 00:00:00.46 Elapsed: 00:00:00.47
# Mc/sec: 1154.20
//
Query:       MMETSP1137-20121227|3306_1  [L=368]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.8e-10   37.6   0.0    7.5e-07   26.8   0.0    2.2  2  TIGR01262 maiA: maleylacetoacetate isomerase
     0.0002   19.7   0.0    0.00037   18.8   0.0    1.4  1  TIGR02196 GlrX_YruB: glutaredoxin-like protein, YruB-family
     0.0026   16.0   0.1     0.0052   15.0   0.1    1.5  1  TIGR02200 GlrX_actino: glutaredoxin-like protein
  ------ inclusion threshold ------
      0.011   13.8   0.0      0.019   13.1   0.0    1.4  1  TIGR02181 GRX_bact: glutaredoxin 3


Domain annotation for each model (and alignments):
>> TIGR01262  maiA: maleylacetoacetate isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.8   0.0   7.3e-10   7.5e-07      16      92 ..      97     171 ..      80     179 .. 0.86
   2 !    8.7   0.0   0.00025      0.26     138     171 ..     201     234 ..     186     250 .. 0.84

  Alignments for each domain:
  == domain 1    score: 26.8 bits;  conditional E-value: 7.3e-10
   TIGR01262  16 iaLaLkgidyesvpvnLlkdGeqkkeefkalNPqelvPtLkidegevltqSlAiieyLeetypepaLlpkdpakrar 92 
                 + L+ k++ y ++ vn+   G +k + f a+ P++ +P+ k+d g+v+ +S  i++ +e++ype ++lp++ +++a 
  MMETSP1137-20121227|3306_1  97 LLLEEKQVPYMVEKVNMNCYG-DKPAWFWAMQPSGGIPVAKVD-GKVIRESNDIMMAIEQAYPERPMLPREDSAKAV 171
                 5577799**********9975.567789***************.6************************99888875 PP

  == domain 2    score: 8.7 bits;  conditional E-value: 0.00025
   TIGR01262 138 GlaalEellkekagafcvGdevtladvcLvpqvy 171
                 G ++  + l+++ g f+ G++++l+d++++p + 
  MMETSP1137-20121227|3306_1 201 GTTSSXAALAAQGGPFFLGEDISLVDCMFAPFLE 234
                 556667789999******************9874 PP

>> TIGR02196  GlrX_YruB: glutaredoxin-like protein, YruB-family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.0   3.7e-07   0.00037       2      61 ..      79     142 ..      78     147 .. 0.76

  Alignments for each domain:
  == domain 1    score: 18.8 bits;  conditional E-value: 3.7e-07
   TIGR02196   2 vkvY..ttpwCppCkkakeyLkskgiafeeidvekdsa..aaeellkklgqrsvPvivigekiv 61 
                 +++Y  t +wCp+C+k+   L++k +++    v+ +      +     + + ++Pv+ +++k++
  MMETSP1137-20121227|3306_1  79 ITLYrdTAAWCPYCEKVWLLLEEKQVPYMVEKVNMNCYgdKPAWFWAMQPSGGIPVAKVDGKVI 142
                 667755789*******************877777765410334455566688999999998876 PP

>> TIGR02200  GlrX_actino: glutaredoxin-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.1   5.1e-06    0.0052       2      34 ..      79     113 ..      78     146 .. 0.73

  Alignments for each domain:
  == domain 1    score: 15.0 bits;  conditional E-value: 5.1e-06
   TIGR02200   2 vtvY..atswCgyCaslkrtLdkdgaeYevvdiek 34 
                 +t+Y  ++ wC+yC+++   L+++ ++Y v  ++ 
  MMETSP1137-20121227|3306_1  79 ITLYrdTAAWCPYCEKVWLLLEEKQVPYMVEKVNM 113
                 566633578*******************8766654 PP

>> TIGR02181  GRX_bact: glutaredoxin 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   1.8e-05     0.019       3      33 ..      81     113 ..      79     150 .. 0.84

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 1.8e-05
   TIGR02181   3 iY..tkksCpycsrAkalLeekgvefeeievdk 33 
                 +Y  t + Cpyc++   lLeek+v +   +v++
  MMETSP1137-20121227|3306_1  81 LYrdTAAWCPYCEKVWLLLEEKQVPYMVEKVNM 113
                 56447789****************887666654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (368 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        75  (0.0182838); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.27u 0.13s 00:00:00.40 Elapsed: 00:00:00.40
# Mc/sec: 1214.30
//
Query:       MMETSP1137-20121227|3307_1  [L=295]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (295 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        63  (0.0153584); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.16s 00:00:00.40 Elapsed: 00:00:00.35
# Mc/sec: 1112.48
//
Query:       MMETSP1137-20121227|3308_1  [L=442]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.9e-06   24.1  11.5    6.9e-06   24.1   7.9    2.8  4  TIGR00880 2_A_01_02: multidrug resistance protein
    0.00025   18.0  10.4    0.00034   17.6   7.2    1.2  1  TIGR00881 2A0104: phosphoglycerate transporter family protein
     0.0012   15.7   7.7     0.0012   15.7   5.3    2.8  3  TIGR00895 2A0115: MFS transporter, aromatic acid:H+ symporter (AAHS) family


Domain annotation for each model (and alignments):
>> TIGR00880  2_A_01_02: multidrug resistance protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.1   7.9   5.1e-09   6.9e-06       3     131 ..      64     193 ..      63     202 .. 0.90
   2 ?   -1.5   0.9       0.4   5.4e+02      95     116 ..     284     305 ..     234     331 .. 0.46
   3 ?   -1.4   0.2      0.37     5e+02      29      49 ..     308     334 ..     290     366 .. 0.72
   4 ?   -3.6   0.1       1.7   2.4e+03      30      41 ..     415     426 ..     404     434 .. 0.50

  Alignments for each domain:
  == domain 1    score: 24.1 bits;  conditional E-value: 5.1e-09
   TIGR00880   3 llagyAlgqlvvsplsglltdrvGrkpvllvglfifvlsqllfalssnitvliiarilqGfgaaaalvagaaliadiikeeersvalgllsagialgpilGpl.lGavlaqalgwralflilallallaf 131
                 +lag  ++ l+  +l g++td++G   +l+  +  f++s+++++ + n++v+  +  l ++++ + + a+  +i   +++ er++ l  ++++  +g++lG + +G +l + l+wr  +l ++l+ ++ +
  MMETSP1137-20121227|3308_1  64 MLAGVSAVCLFGKLLGGAITDKLGGWTLLVAVFTGFFVSSAVLVSTANVAVFGAMWWLNSLAYTVTWGAACQIIGATYAPAERPAQLTRIASASRFGASLGSMfFGKLLKEGLHWRQALLPIVLVQAVLA 193
                 789999999*****************************************************************************************99976279999999***987776655544433 PP

  == domain 2    score: -1.5 bits;  conditional E-value: 0.4
   TIGR00880  95 gialgpilGpllGavlaqalgw 116
                 +   ++i  +++G  +++ l+ 
  MMETSP1137-20121227|3308_1 284 CSGGSVIGLLIVGDRVYKKLSL 305
                 3333333333345555533322 PP

  == domain 3    score: -1.4 bits;  conditional E-value: 0.37
   TIGR00880  29 pvllvglfifvlsqllfals......s 49 
                 + +lv +++ + +++++als       
  MMETSP1137-20121227|3308_1 308 QAMLVAVLLLICFAVPAALSfekelpV 334
                 557777777777777777775544444 PP

  == domain 4    score: -3.6 bits;  conditional E-value: 1.7
   TIGR00880  30 vllvglfifvls 41 
                 v+ +g+ i+++ 
  MMETSP1137-20121227|3308_1 415 VISIGMPICMMK 426
                 333444444444 PP

>> TIGR00881  2A0104: phosphoglycerate transporter family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   7.2   2.5e-07   0.00034      37     318 ..      66     340 ..      44     387 .. 0.82

  Alignments for each domain:
  == domain 1    score: 17.6 bits;  conditional E-value: 2.5e-07
   TIGR00881  37 safsiaYgiskfvvgvvsDrvsarvflaigLilvaivnlflgfssslwvliallalnGlfqglgwppcgrlltkwfsrserGtvvaiwnishnvggallpplvllaialllswhvvfivpgiiaiivslilllllrdspqsvglpkleelrneekeedkekkeeeltkkeillqyvlknkvlwlislvnvfvyvvrtgiedWvplYltqekglskekasvavtlfelaglvGtllaGwlsDklfkgrraplavifmaliivsllvywlivaanklvvlillf 318
                 +++s++  ++k++ g + D+ +   +l +   +  + + +l++  +++v+ a++ ln l+  + w  + +++ + + + er   +   ++++ +g  l    +   +++ l+w+++++   ++  +++l++ + l  s+ +++  k++  + e  + +++ +       e+  +  +     wl+ + +++++    ++ + +   l  +  +s  +a ++  l   + ++G l+ G    k +   ++++ v+++ li +++       +++ +v++ +l+
  MMETSP1137-20121227|3308_1  66 AGVSAVCLFGKLLGGAITDKLGGWTLLVAVFTGFFVSSAVLVSTANVAVFGAMWWLNSLAYTVTWGAACQIIGATYAPAERPAQLTRIASASRFGASLGSMFFGKLLKEGLHWRQALLPIVLVQAVLALLCGAELFSSR-APKAVKDGSAPTEGAQAAAAPA-----SAEASPWRHVATVDFWLMFVPKIVIFTYTQFFMNFLGPLLHHVYAFSHGDATSFAGLCSGGSVIGLLIVGDRVYKKLSLDKQAMLVAVLLLICFAVPAALS-FEKELPVDISALV 340
                 667777779*************99998888888888888889999*******************************************************9999999********998888888888888877666554.4566677888888844444444.....455555666777899*************99999**999******************************998777788888888888888888777765555.3333344444444 PP

>> TIGR00895  2A0115: MFS transporter, aromatic acid:H+ symporter (AAHS) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   5.3   8.6e-07    0.0012     246     398 .]      17     172 ..       3     172 .. 0.81
   2 !    5.7   1.5   0.00094       1.3     249     329 ..     235     322 ..     202     359 .. 0.68
   3 ?    0.1   0.2     0.046        63     254     331 ..     338     417 ..     325     432 .. 0.74

  Alignments for each domain:
  == domain 1    score: 15.7 bits;  conditional E-value: 8.6e-07
   TIGR00895 246 gklakat.llLwllyflllvvvYlltsWlPkLlveagaslskaa..lllvllnvGgvlgslllgaladrlgpkvlalllllaavfavlvvs.tlssptllllllvilGlfvngaqsgllalmaefYptaiRatgvgwaigiGrlgaiigpilagvll 398
                 g ++  t +lL+ ++ +++ +  ++ s l  ++v+  + l+  a   +l+ +++  ++g+ll ga+ d+lg   ++l++++++ f++ +v  ++ +++++  +  +  l+++   ++   + +  Y++a R   +  + +  r+ga +g +  g ll
  MMETSP1137-20121227|3308_1  17 GSMVDTTsMLLFTAVLINQTGRVMVPSVLTSIMVDPEFVLTVDArkEMLAGVSAVCLFGKLLGGAITDKLGG-WTLLVAVFTGFFVSSAVLvSTANVAVFGAMWWLNSLAYTVTWGAACQIIGATYAPAERPAQLTRIASASRFGASLGSMFFGKLL 172
                 555544415555666677788888888888777776665554431167888999999**************9.88889999999998877768999999999***************************************************9997 PP

  == domain 2    score: 5.7 bits;  conditional E-value: 0.00094
   TIGR00895 249 akatllLwllyflllvvv....YlltsWlPkLlveagaslskaalllvllnvGgvlgslllg.aladrlgpk..vlalllllaavfav 329
                   at+ +wl+++ ++v++    ++++   P+L    ++s   a+ +  l + G v+g l++g ++  +l     ++++ +ll   fav
  MMETSP1137-20121227|3308_1 235 HVATVDFWLMFVPKIVIFtytqFFMNFLGPLLHHVYAFSHGDATSFAGLCSGGSVIGLLIVGdRVYKKLSLDkqAMLVAVLLLICFAV 322
                 567888999988554433223366666669******************************9944555554432233333333333332 PP

  == domain 3    score: 0.1 bits;  conditional E-value: 0.046
   TIGR00895 254 lLwllyflllvvvYlltsWlP..kLlveagaslskaalllvllnvGgvlgslllgaladrlgpk.vlalllllaavfavlv 331
                 +L++   +l  v Y+l  +lP     +  g++ + aal++ l+ +Gg   s++  + a +  +    +++l+  a fav+ 
  MMETSP1137-20121227|3308_1 338 ALVVPLLFLWGVAYALPFYLPpgEFAMRIGGK-TAAALFTNLFDAGGFTMSFFWNRWATKASKDgDFTVVLQSLALFAVIS 417
                 56666666677778888888765556666665.567888999999999999999999998888878888888888888775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (442 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       150  (0.0365675); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.36u 0.15s 00:00:00.51 Elapsed: 00:00:00.87
# Mc/sec: 670.57
//
Query:       MMETSP1137-20121227|3309_1  [L=410]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00013   18.4   0.7      0.027   10.7   0.1    2.1  2  TIGR01480 copper_res_A: copper-resistance protein, CopA family


Domain annotation for each model (and alignments):
>> TIGR01480  copper_res_A: copper-resistance protein, CopA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.4   0.0   0.00014      0.57     122     162 ..       5      53 ..       1      74 [. 0.71
   2 !   10.7   0.1   6.6e-06     0.027     493     592 ..     278     384 ..     224     385 .. 0.71

  Alignments for each domain:
  == domain 1    score: 6.4 bits;  conditional E-value: 0.00014
   TIGR01480 122 iapGetftyrfkv...eqsGtywyhsh....safqeqaGlyGalvi.dP 162
                 + p   + y +++   + +Gt wyh h    +a+q   G  G ++i dP
  MMETSP1137-20121227|3309_1   5 VVPDGSYEYVYEIpadHMAGTAWYHPHfhgsTALQMAGGAAGLVIIeDP 53 
                 5666677777776445679*****9986664568877788887777455 PP

  == domain 2    score: 10.7 bits;  conditional E-value: 6.6e-06
   TIGR01480 493 awsfdGeefgkakPlrlky..gerlrvvlvndtmmahPihlhGlwseleda.....dgefqv..rkhtvdvaPgskvsfrvrada.lGrwayhchlllhmeaGmlrevkv 592
                 + s++Ge f +a    ++   ge + + l    +  hP h+h    +++++     dg f+    + t+ ++ ++  + r+++d   G+   hch l h + Gm+ + kv
  MMETSP1137-20121227|3309_1 278 SLSINGEVFVDASTFVFEMpvGEVISMNL--HGINLHPFHVHVNPLQIVSTpddvyDGYFRQgdWQDTITLSEST-ATVRMQTDVfTGTQLIHCHNLAHEDLGMMVNTKV 384
                 56899999998888777761145444444..56778999999987777654222223444331257899998765.567888886379*****************88776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (410 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        66  (0.0160897); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.31u 0.19s 00:00:00.50 Elapsed: 00:00:00.50
# Mc/sec: 1082.31
//
Query:       MMETSP1137-20121227|3310_1  [L=331]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (331 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       105  (0.0255973); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.14s 00:00:00.42 Elapsed: 00:00:00.40
# Mc/sec: 1092.21
//
Query:       MMETSP1137-20121227|3311_1  [L=409]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.8e-54  181.7   3.7    3.5e-54  181.4   2.5    1.1  1  TIGR00309 V_ATPase_subD: V-type ATPase, D subunit


Domain annotation for each model (and alignments):
>> TIGR00309  V_ATPase_subD: V-type ATPase, D subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  181.4   2.5   8.4e-58   3.5e-54       3     209 .]       9     215 ..       7     215 .. 0.95

  Alignments for each domain:
  == domain 1    score: 181.4 bits;  conditional E-value: 8.4e-58
   TIGR00309   3 kvkpTrmeLlklkdklKlakrgyslLkeKrdaLimefvkilervkdvkekveqklkeaisdlieaqavkgevavkeaaksvsteklevdaksknimGVvvpvfeseeiekkvte.RgygllstsskvdeaaeiyeeavelivElaelettirlLaeeievTkrRVNalEkviIPrlkntikyInikLdeldrenfvRlKkikskleke 209
                 +v+pTr +L+ +k kl +ak+g+s Lk+K daL+m+++++l ++ ++ke ++  +ke  + l+e+ ++ g++    + + v t+  +v+ +  ni+GV vpvf++++  +       +gl ++++++ +a   + ++v+++v la l+t++ +L+e i+vT+rRVNal+ v+IPr+ nt++yI+ +Ldel+re+f+RlK  + k+ ke
  MMETSP1137-20121227|3311_1   9 NVFPTRQNLQVMKVKLVGAKKGHSXLKKKADALTMRLRNLLRNILEAKEAMGLAFKEGNFALAEVKYAAGDIRPM-VIENVGTAAKRVETRIDNIAGVKVPVFKAIDKADAGSGsDNTGLSKGGQQISKARVTFAKSVDVLVQLATLQTSFTILDEAIKVTSRRVNALDSVVIPRIANTVAYIKAELDELEREEFFRLKRSQDKKRKE 215
                 69*********************************************************************8765.56677779999******************987776554479**************************************************************************************99886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (409 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       169  (0.0411994); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.30u 0.15s 00:00:00.44 Elapsed: 00:00:00.72
# Mc/sec: 749.77
//
Query:       MMETSP1137-20121227|3312_1  [L=499]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0066   14.1   0.0      0.017   12.7   0.0    1.6  2  TIGR03354 VI_FHA: type VI secretion system FHA domain protein


Domain annotation for each model (and alignments):
>> TIGR03354  VI_FHA: type VI secretion system FHA domain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0       0.2   8.3e+02      23      51 ..     358     388 ..     349     391 .. 0.80
   2 !   12.7   0.0   4.2e-06     0.017      60      94 ..     418     450 ..     417     460 .. 0.96

  Alignments for each domain:
  == domain 1    score: -2.7 bits;  conditional E-value: 0.2
   TIGR03354  23 eeggtiGrsedcdWvl..pDperlvssrhae 51 
                 +++  iGrs + d  +  + p  ++ss+h++
  MMETSP1137-20121227|3312_1 358 TKEYMIGRSRKTDIRIgqNAPMPYISSHHFR 388
                 567889*******999444677899999987 PP

  == domain 2    score: 12.7 bits;  conditional E-value: 4.2e-06
   TIGR03354  60 lltdlStnGvflnnsgsplrrgepvrLeqgdelrl 94 
                 +l+dlS nG+f+n  g  ++r + + L++gd++ l
  MMETSP1137-20121227|3312_1 418 WLEDLSQNGTFIN--GVLVGRNKRALLKDGDRVEL 450
                 79***********..9****************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (499 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        90  (0.0219405); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.13s 00:00:00.49 Elapsed: 00:00:00.60
# Mc/sec: 1097.71
//
Query:       MMETSP1137-20121227|3313_1  [L=140]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (140 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       132  (0.0321794); expected 82.0 (0.02)
Passed bias filter:                      106  (0.0258411); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.17s 00:00:00.36 Elapsed: 00:00:01.24
# Mc/sec: 149.02
//
Query:       MMETSP1137-20121227|3314_1  [L=141]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (141 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        43  (0.0104827); expected 82.0 (0.02)
Passed bias filter:                       39  (0.00950756); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.11s 00:00:00.26 Elapsed: 00:00:00.34
# Mc/sec: 547.37
//
Query:       MMETSP1137-20121227|3315_1  [L=366]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (366 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        61  (0.0148708); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.15s 00:00:00.41 Elapsed: 00:00:00.34
# Mc/sec: 1420.82
//
Query:       MMETSP1137-20121227|3316_1  [L=366]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (366 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       249  (0.0607021); expected 82.0 (0.02)
Passed bias filter:                      123  (0.0299854); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.16s 00:00:00.47 Elapsed: 00:00:00.56
# Mc/sec: 862.64
//
Query:       MMETSP1137-20121227|3317_1  [L=339]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   1.1e-109  365.3   0.0   1.2e-109  365.2   0.0    1.0  1  TIGR01393 lepA: GTP-binding protein LepA
    9.9e-42  140.7   0.0    5.4e-40  135.0   0.0    2.0  1  TIGR01394 TypA_BipA: GTP-binding protein TypA/BipA
    8.2e-34  114.6   0.0    1.7e-29  100.3   0.0    2.0  2  TIGR00490 aEF-2: translation elongation factor aEF-2
    2.9e-29   99.5   0.0    1.3e-26   90.8   0.0    2.0  2  TIGR00484 EF-G: translation elongation factor G
    3.1e-23   79.8   0.0    5.9e-22   75.6   0.0    2.0  2  TIGR00503 prfC: peptide chain release factor 3
    6.7e-19   65.8   0.0    8.3e-19   65.5   0.0    1.0  1  TIGR00475 selB: selenocysteine-specific translation elongation factor
    1.4e-18   65.0   0.0    1.8e-18   64.7   0.0    1.1  1  TIGR00231 small_GTP: small GTP-binding protein domain
    1.2e-15   55.2   0.0    1.1e-14   52.0   0.0    1.9  1  TIGR00487 IF-2: translation initiation factor IF-2
    2.2e-14   50.6   0.0    1.3e-11   41.4   0.0    2.9  2  TIGR00483 EF-1_alpha: translation elongation factor EF-1, subunit alpha
    1.1e-13   48.9   0.0    8.5e-12   42.6   0.0    2.5  2  TIGR02034 CysN: sulfate adenylyltransferase, large subunit
    1.2e-12   45.1   0.0    1.6e-12   44.7   0.0    1.1  1  TIGR00485 EF-Tu: translation elongation factor Tu
    7.2e-09   32.4   0.0    2.1e-08   30.9   0.0    1.7  2  TIGR00491 aIF-2: translation initiation factor aIF-2
    1.7e-08   32.0   0.0      7e-05   20.0   0.0    2.4  2  TIGR03680 eif2g_arch: translation initiation factor 2, gamma subunit
    2.3e-08   31.3   0.0    6.2e-07   26.6   0.0    2.1  2  TIGR03594 GTPase_EngA: ribosome-associated GTPase EngA
     0.0077   13.8   0.0       0.26    8.8   0.0    2.2  2  TIGR03598 GTPase_YsxC: ribosome biogenesis GTP-binding protein YsxC
  ------ inclusion threshold ------
      0.032   10.9   0.0      0.051   10.2   0.0    1.2  1  TIGR03918 GTP_HydF: [FeFe] hydrogenase H-cluster maturation GTPase HydF


Domain annotation for each model (and alignments):
>> TIGR01393  lepA: GTP-binding protein LepA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  365.2   0.0  4.7e-112  1.2e-109       2     310 ..      30     338 ..      29     339 .] 0.98

  Alignments for each domain:
  == domain 1    score: 365.2 bits;  conditional E-value: 4.7e-112
   TIGR01393   2 kirnfsiiahidhGkstladrllektkavserelkeqlldsldlererGitikaqavrlkyk.akdgeeyvlnlidtPGhvdfsyevsrslaaceGalllvdaaqGveaqtlanvylalekdleiiPvinkidlPsadvervkkeieeviGldaeeailvsaktGigieelleaivkkvpaPkgdkeaplkalifdsvydayrGvvvyvrvveGkikkgdkikllstgkeyeveevgvltpklvkeeelkaGevGyliagikdvkdvkvGdtitsvkkpakealpGfkkvkpvvfaglyPidsedyeelr 310
                 +irnf+ii+h+dhGkstladrl+e+t+ + +   + qlldsl +ererGitikaq+v l y  + d+  y +nlidtPGhvdfsyevsrs+aac+Galllvda++Gv+aqt+an++la+e+dl iiPv+nk+dl  adv  + +++     +d ++++++saktG g++ ll +++++ p+ +  +++pl+ l+fd++yd++rGv+++++v+ Gk+++g ++   +++key+v  v ++++ +   ++l  G+vG+++ g+k ++++++Gdt  + ++p + a+pGfk+ +++vfaglyP+ ++ + el+
  MMETSP1137-20121227|3317_1  30 RIRNFCIISHVDHGKSTLADRLMEITGLIGTSGSQGQLLDSLGIERERGITIKAQTVSLFYYpQPDSPPYLFNLIDTPGHVDFSYEVSRSIAACQGALLLVDATKGVQAQTVANFFLAFEQDLSIIPVVNKVDLGHADVAGTLEQMSSAFDIDPSDTLAISAKTGLGVDALLPTLLERTPPLSAREDSPLRILLFDAWYDEHRGVLCLMQVLGGKLQPGTRLVSAASKKEYTVLSVSLMRIAQIPVDRLGPGQVGCVCLGMKAISEASIGDTFSHPSSP-QPAVPGFKRPQAMVFAGLYPTLESGFGELQ 338
                 89*********************************************************987477899*************************************************************************************************************************************************************************************************************999887.679******************999988875 PP

>> TIGR01394  TypA_BipA: GTP-binding protein TypA/BipA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  135.0   0.0   2.1e-42   5.4e-40       1     292 [.      31     310 ..      31     316 .. 0.87

  Alignments for each domain:
  == domain 1    score: 135.0 bits;  conditional E-value: 2.1e-42
   TIGR01394   1 irniaiiahvDhGkttlvDklLkqsgvlrekeeveervmDsndlererGitilakntavkykd......tkinivDtPGhaDfGGevervlsmvdgvlllvDaseGplpqtrfvlkkalelglkpivvinkiDrpdarpeevvdevfdLfvelgaddeqldfpvvyasakeGvasleeedesedleplfdailehvpaPkadkdeplqllvttldydeylGriaigrverGkvkkgqqvallkkdgkiekariskllafeglerveideaeaGdivava....Gledieigetiadaeeaea 292
                 irn  ii+hvDhGk tl D+l++ +g +   +  + +++Ds  +ererGiti a+++++ y        +  n++DtPGh Df  ev r +   +g+lllvDa++G+ +qt      a+e++l +i v+nk+D  +a+++   +++   f +++ +d      ++  sak+G+           ++ l+ ++le+ p+ +a +d+pl++l     yde+ G + + +v  Gk++ g+++  + ++++ +   +s     + + ++++d+ + G++ +v+     +++++ig+t ++++++++
  MMETSP1137-20121227|3317_1  31 IRNFCIISHVDHGKSTLADRLMEITGLIGT-SGSQGQLLDSLGIERERGITIKAQTVSLFYYPqpdsppYLFNLIDTPGHVDFSYEVSRSIAACQGALLLVDATKGVQAQTVANFFLAFEQDLSIIPVVNKVDLGHADVAGTLEQMSSAF-DIDPSD------TLAISAKTGLG----------VDALLPTLLERTPPLSAREDSPLRILLFDAWYDEHRGVLCLMQVLGGKLQPGTRLVSAASKKEYTVLSVS----LMRIAQIPVDRLGPGQVGCVClgmkAISEASIGDTFSHPSSPQP 310
                 8*************************7765.567899***********************9988899999*****************************************999999**********************99999887766.566554......34557777764..........567999***********************************************99888877776665554....4457788899998888866544112567789****999988764 PP

>> TIGR00490  aEF-2: translation elongation factor aEF-2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  100.3   0.0   6.8e-32   1.7e-29      16     163 ..      28     176 ..      20     181 .. 0.89
   2 !   12.3   0.0   2.7e-05    0.0071     286     372 ..     215     304 ..     209     316 .. 0.84

  Alignments for each domain:
  == domain 1    score: 100.3 bits;  conditional E-value: 6.8e-32
   TIGR00490  16 pefirnigivahidhgkttlsdnllagagmiseelageqlfldfdeqeqergitidaanvsmvhey..egneylinlidtpghvdfggdvtramravdgaivvvcavegvmpqtetvlrqalkenvkpvlfinkvdrlinelkltaeelq 163
                 pe+irn  i++h+dhgk+tl+d l+  +g+i    +   + ld    e+ergiti+a  vs+ +    +   yl nlidtpghvdf  +v+r++ a +ga+++v+a +gv  qt + +  a+ +++  +  +nkvd    ++  t e++ 
  MMETSP1137-20121227|3317_1  28 PERIRNFCIISHVDHGKSTLADRLMEITGLIGTSGSQG-QLLDSLGIERERGITIKAQTVSLFYYPqpDSPPYLFNLIDTPGHVDFSYEVSRSIAACQGALLLVDATKGVQAQTVANFFLAFEQDLSIIPVVNKVDLGHADVAGTLEQMS 176
                 79*****************************9865444.5689999***************99854115667****************************************************************87777776666665 PP

  == domain 2    score: 12.3 bits;  conditional E-value: 2.7e-05
   TIGR00490 286 pegplavvitkivvdkhagevavgrlysgaikkgsevylvdskakariqqvgvymgpervevdeipagni.vavvglk...eavagetics 372
                  + pl +++ +   d+h g ++  ++ +g++++g+ +    sk+   +  v++ m   +++vd++  g++ +  +g+k   ea+ g+t  +
  MMETSP1137-20121227|3317_1 215 EDSPLRILLFDAWYDEHRGVLCLMQVLGGKLQPGTRLVSAASKKEYTVLSVSL-MRIAQIPVDRLGPGQVgCVCLGMKaisEASIGDTFSH 304
                 578999999***************************99999999999999997.88899*********99444567763336777777655 PP

>> TIGR00484  EF-G: translation elongation factor G
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.8   0.0     5e-29   1.3e-26       5     160 ..      26     184 ..      22     198 .. 0.91
   2 !    7.0   0.0    0.0011      0.29     300     392 ..     211     306 ..     195     312 .. 0.79

  Alignments for each domain:
  == domain 1    score: 90.8 bits;  conditional E-value: 5e-29
   TIGR00484   5 vdleklrniGisahidaGktttterilfytgkihkigevhdGaatmdwmeqekerGititsaattvewkd......frinlidtPGhvdftveverslrvldGavavldavaGvepqsetvwrqakkyevPrivfvnkmdkiGanflkvveqlksrldvnav 160
                 ++ e++rn+ i +h+d Gk+t+++r++  tg i   g        +d++  e+erGiti + + + ++        +  nlidtPGhvdf+ ev rs+    Ga++++da  Gv++q+ + +  a + ++  i  vnk+d   a++  + eq+ s +d+++ 
  MMETSP1137-20121227|3317_1  26 IPPERIRNFCIISHVDHGKSTLADRLMEITGLIGTSG---SQGQLLDSLGIERERGITIKAQTVSLFYYPqpdsppYLFNLIDTPGHVDFSYEVSRSIAACQGALLLVDATKGVQAQTVANFFLAFEQDLSIIPVVNKVDLGHADVAGTLEQMSSAFDIDPS 184
                 56789**********************9999865544...445689**************999999987778899999*********************************************************************999999999888764 PP

  == domain 2    score: 7.0 bits;  conditional E-value: 0.0011
   TIGR00484 300 lkasddepfvalafkvatdpfvgkltfvrvysGvlksGsevlnsrkekkervgrlvkmhankreeieevraGdi.aaliGlkd...tttGdtlcdek 392
                 l+a +d+p+  l f    d++ g l  ++v  G+l+ G  ++ +  +k   v  +  m    +  ++    G++ +  +G+k    ++ Gdt++ ++
  MMETSP1137-20121227|3317_1 211 LSAREDSPLRILLFDAWYDEHRGVLCLMQVLGGKLQPGTRLVSAASKKEYTVLSVSLMRIA-QIPVDRLGPGQVgCVCLGMKAiseASIGDTFSHPS 306
                 5788999*********************************998888887777766555544.45677777777745567877511156899988765 PP

>> TIGR00503  prfC: peptide chain release factor 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.6   0.0   2.3e-24   5.9e-22       9     157 ..      29     176 ..      26     198 .. 0.83
   2 ?    2.1   0.0     0.044        11     308     379 ..     230     304 ..     221     319 .. 0.78

  Alignments for each domain:
  == domain 1    score: 75.6 bits;  conditional E-value: 2.3e-24
   TIGR00503   9 dkrrtfaiishpdaGkttltekvllyGnaiqeaGavkargsqrsaksdwmemekqrGisitt.svlqfdyrd.....klvnlldtpGhedfsedtyrtltavdsalmvidaakGveertrkllevtrlrdlpiltflnkldrdirdplelldeve 157
                 ++ r+f iish d Gk+tl+++++   + i ++G+       +    d + +e++rGi+i + +v  f y +      l nl+dtpGh dfs +  r+++a + al+++da+kGv+ +t   + ++  +dl i+  +nk+d    d    l+++ 
  MMETSP1137-20121227|3317_1  29 ERIRNFCIISHVDHGKSTLADRLMEITGLIGTSGS-------QGQLLDSLGIERERGITIKAqTVSLFYYPQpdsppYLFNLIDTPGHVDFSYEVSRSIAACQGALLLVDATKGVQAQTVANFFLAFEQDLSIIPVVNKVDLGHADVAGTLEQMS 176
                 578********************999888888875.......3345799***********652455555543223336***************************************************************87776665555555 PP

  == domain 2    score: 2.1 bits;  conditional E-value: 0.044
   TIGR00503 308 khrdrvaflrvvsGkyekdmklkhvrtgkdv.vlsdalkllagdresveeayaGdi....iGlhnhGtiqiGdtvtq 379
                  hr  + +++v+ Gk + + +l  +   k+  vls +l  +a  +  v+   +G++    +G++      iGdt+ +
  MMETSP1137-20121227|3317_1 230 EHRGVLCLMQVLGGKLQPGTRLVSAASKKEYtVLSVSLMRIA--QIPVDRLGPGQVgcvcLGMKAISEASIGDTFSH 304
                 69999****************999988887515666555555..566777777765554689999999999999975 PP

>> TIGR00475  selB: selenocysteine-specific translation elongation factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.5   0.0   3.3e-21   8.3e-19       3     181 ..      34     223 ..      33     265 .. 0.83

  Alignments for each domain:
  == domain 1    score: 65.5 bits;  conditional E-value: 3.3e-21
   TIGR00475   3 iataGHvDHGKttLlkaltgid............adrlPeEkKRGltiD...lGyaylpled...kvlgliDvPGHekflknalagvggidaalLvvdadeGvkaqtkEHLavlkllgikelivvltKaDrvdeeevkevEeelkeileeeeflknakivkvsAktGqGieeLkkelknLlesldakdkqkplrlai 181
                 + +  HvDHGK tL+  l +i              d l  E+ RG+ti    +   y+p++d   +  +liD PGH  f  ++  ++++ ++alL+vda  Gv+aqt     ++   ++  +i v++K+D    + +   E++  ++     +   ++ + +sAktG G+++L  +l++ +  l a+  ++plr+ +
  MMETSP1137-20121227|3317_1  34 FCIISHVDHGKSTLADRLMEITgligtsgsqgqlLDSLGIERERGITIKaqtVSLFYYPQPDsppYLFNLIDTPGHVDFSYEVSRSIAACQGALLLVDATKGVQAQTVANFFLAFEQDLS-IIPVVNKVDLGHADVAGTLEQMSSAFD----ID-PSDTLAISAKTGLGVDALLPTLLERTPPLSAR-EDSPLRILL 223
                 56778***********9999988889999998888999**********7444678899**9999999******************************************99998888888.99*******999886666655555554....44.56679*************88877766666664.677777765 PP

>> TIGR00231  small_GTP: small GTP-binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.7   0.0   7.1e-21   1.8e-18       4     156 ..      32     198 ..      29     205 .. 0.84

  Alignments for each domain:
  == domain 1    score: 64.7 bits;  conditional E-value: 7.1e-21
   TIGR00231   4 ikivivGhvdvGKstLlnsllknkisiteskpgvtrdyvteqieedGkt..................ykvnllDTaGqedfdairrlyvreverslevvdivilvldveeglekqtkeiiheakkkgvpiilvvnKiDlkd....dlktkvkslfaklnaepiielsaetgknid 156
                 ++  i+ hvd+GKstL ++l + ++ i  s+++    +    ++e+G+t                  y +nl+DT+G++df         ev+rs+  + +++l++d+ +g+++qt   +  a +++  ii vvnK+Dl +     ++++  s f+     +   +sa+tg ++d
  MMETSP1137-20121227|3317_1  32 RNFCIISHVDHGKSTLADRLMEITGLIGTSGSQGQLLDSLGIERERGITikaqtvslfyypqpdsppYLFNLIDTPGHVDF-------SYEVSRSIAACQGALLLVDATKGVQAQTVANFFLAFEQDLSIIPVVNKVDLGHadvaGTLEQMSSAFDIDPS-DTLAISAKTGLGVD 198
                 67789***************************88888888889**************************************.......99**************************999888988****************7444333333333332222.34556666665555 PP

>> TIGR00487  IF-2: translation initiation factor IF-2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.0   0.0   4.1e-17   1.1e-14      91     296 ..      35     253 ..      25     260 .. 0.87

  Alignments for each domain:
  == domain 1    score: 52.0 bits;  conditional E-value: 4.1e-17
   TIGR00487  91 timGhvDhGktsLLdsirktkvaegeaGGitqhiGayqvekedkk....................kitflDtPGheaftsmrarGakvtDivvlvvaadDGvkpqtieaiehakaanvPiivainkiDkpeanpD.rvkqelseyglvpeewGGetifvpvsalkgkgideLldaiLlqseveelkanknkqakgvvieakldkgrGpvatvlvqeGtLkvGDivvv 296
                  i+ hvDhGk +L d + ++    g +G   q + +  +e e +                        ++DtPGh  f+   +r   +   ++l v a  Gv+ qt+     a + +  ii ++nk+D  +a+    ++q  s +++ p +       + +sa++g g+d Ll ++L       l a ++   +    +a  d  rG ++ + v  G L+ G  +v 
  MMETSP1137-20121227|3317_1  35 CIISHVDHGKSTLADRLMEITGLIGTSGSQGQLLDSLGIERERGItikaqtvslfyypqpdsppyLFNLIDTPGHVDFSYEVSRSIAACQGALLLVDATKGVQAQTVANFFLAFEQDLSIIPVVNKVDLGHADVAgTLEQMSSAFDIDPSD------TLAISAKTGLGVDALLPTLLE--RTPPLSAREDSPLRILLFDAWYDEHRGVLCLMQVLGGKLQPGTRLVS 253
                 6999**************999888888888888887777777654444555666666666677766788***************************************************************9862566667789999976......5899*************9775..557899*********************************99988876 PP

>> TIGR00483  EF-1_alpha: translation elongation factor EF-1, subunit alpha
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.4   0.0   5.1e-14   1.3e-11       9     154 ..      33     164 ..      29     178 .. 0.84
   2 ?    2.8   0.0     0.027         7     221     317 ..     212     311 ..     196     329 .. 0.71

  Alignments for each domain:
  == domain 1    score: 41.4 bits;  conditional E-value: 5.1e-14
   TIGR00483   9 nvafighvdsgkstlvgrllyeagaiderlleklkkeaeekgkasfefayvldklkeerergvtidvahkk.f.....etdkyevtivdapghrdfiknmitgasqadaavlvvavddgelevqpqtrehvllartlgikqlivainkmdsv 154
                 n ++i hvd+gkstl  rl+  +g i            +           +ld l  ererg+ti       f     +++ y + ++d+pgh df  ++    +  + a+l+v++++g   vq+qt    +la+   +  +i  +nk+d  
  MMETSP1137-20121227|3317_1  33 NFCIISHVDHGKSTLADRLMEITGLIGTSGS-------Q---------GQLLDSLGIERERGITIKAQTVSlFyypqpDSPPYLFNLIDTPGHVDFSYEVSRSIAACQGALLLVDATKG---VQAQTVANFFLAFEQDLS-IIPVVNKVDLG 164
                 8899****************99999875432.......2.........2489*************86543212223336788**********************************999...*************99986.67779999975 PP

  == domain 2    score: 2.8 bits;  conditional E-value: 0.027
   TIGR00483 221 ekpvdkplripiqdvysitgvgtvpvgrvetgvlkkgekvvfepagvsgevksie.mhheqi..eqaepgd..nigfnvrgvskkdirrgdvagdadnppkv 317
                 +   d plri + d +     g + + +v  g l++g+++v + +     v s+  m   qi  ++  pg+   + + ++++s      gd   ++  p  +
  MMETSP1137-20121227|3317_1 212 SAREDSPLRILLFDAWYDEHRGVLCLMQVLGGKLQPGTRLVSAASKKEYTVLSVSlMRIAQIpvDRLGPGQvgCVCLGMKAISEAS--IGDTFSHPSSPQPA 311
                 456799***********************************999999888999873444555114455664112444455555444..47777777776555 PP

>> TIGR02034  CysN: sulfate adenylyltransferase, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.6   0.0   3.3e-14   8.5e-12      53     160 ..      66     179 ..      32     200 .. 0.76
   2 ?   -1.8   0.0       1.1   2.7e+02     239     302 ..     240     308 ..     217     318 .. 0.63

  Alignments for each domain:
  == domain 1    score: 42.6 bits;  conditional E-value: 3.3e-14
   TIGR02034  53 llvdGlqaereqgitid...vayryf...stdkrkfivadtPGheqytrnmatgastadlavllvdarkGvleqtrrhsiiasllGikhvvlavnkidlvdyd.eevfeeikkdy 160
                  l+d l  ere+giti    v+  y+   +     f + dtPGh+ +  ++  ++++++ a+llvda kGv++qt    ++a    +  ++  vnk+dl + d + ++e++++++
  MMETSP1137-20121227|3317_1  66 QLLDSLGIERERGITIKaqtVSLFYYpqpDSPPYLFNLIDTPGHVDFSYEVSRSIAACQGALLLVDATKGVQAQTVANFFLAFEQDL-SIIPVVNKVDLGHADvAGTLEQMSSAF 179
                 589*************7444666666222334567999**************************************99999877666.578889*****8766234555555554 PP

  == domain 2    score: -1.8 bits;  conditional E-value: 1.1
   TIGR02034 239 iasGsvkvGdevvvlpsgresrvarivt...fdgelekaeaGe..avtlvledeidisrGdllaaadea 302
                 +++G++++G ++v + s +e  v ++     ++  +++   G+  +v l +++  + s Gd +++  + 
  MMETSP1137-20121227|3317_1 240 VLGGKLQPGTRLVSAASKKEYTVLSVSLmriAQIPVDRLGPGQvgCVCLGMKAISEASIGDTFSHPSSP 308
                 678889999988888888776665443200023334444444422566666776777777777766665 PP

>> TIGR00485  EF-Tu: translation elongation factor Tu
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.7   0.0   6.3e-15   1.6e-12      14     141 ..      33     164 ..      29     182 .. 0.83

  Alignments for each domain:
  == domain 1    score: 44.7 bits;  conditional E-value: 6.3e-15
   TIGR00485  14 nvgtighvdhgkttltaaittvlakegkaaakkydeidkapeekargitintahve..y....etekrhyahvdcpghadyvknmitgaaqmdgailvvsaadgpmpqtrehillarqvgvpklvvflnkvdlv 141
                 n   i hvdhgk+tl+  + ++    g++   + + +d+   e++rgiti++ +v   y    ++    +  +d pgh d+  ++    a  +ga+l+v a+ g+  qt    +la +  + +++  +nkvdl 
  MMETSP1137-20121227|3317_1  33 NFCIISHVDHGKSTLADRLMEITGLIGTS-GSQGQLLDSLGIERERGITIKAQTVSlfYypqpDSPPYLFNLIDTPGHVDFSYEVSRSIAACQGALLLVDATKGVQAQTVANFFLAFEQDL-SIIPVVNKVDLG 164
                 67789***********9998876665554.45567899999**********999864433433455566789*******************************************998877.466778999875 PP

>> TIGR00491  aIF-2: translation initiation factor aIF-2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.9   0.0   8.1e-11   2.1e-08       7     133 ..      34     163 ..      30     171 .. 0.77
   2 ?   -2.3   0.0      0.94   2.4e+02     475     505 ..     228     258 ..     219     266 .. 0.76

  Alignments for each domain:
  == domain 1    score: 30.9 bits;  conditional E-value: 8.1e-11
   TIGR00491   7 vavlGhvdhGkttlldkirktrva...kreaGgitqhiGaseiPidvikrlcgdllkklkidlkiPGll.vidtPGheaftslrkrGGaladiailvvdineGfkpqtveavnilrqlktPfvvaankidr 133
                  +++ hvdhGk+tl d++ +       +   G++   +G        ik  +  l+  ++     P l+ +idtPGh  f+    r  a    a+l+vd   G++ qtv    +  +     +   nk+d+
  MMETSP1137-20121227|3317_1  34 FCIISHVDHGKSTLADRLMEITGLigtSGSQGQLLDSLGIERERGITIKAQTVSLF-YYPQPDSPPYLFnLIDTPGHVDFSYEVSRSIAACQGALLLVDATKGVQAQTVANFFLAFEQDLSIIPVVNKVDL 163
                 599*************9877665401144556666666665555556666666666.45555566666656**************************************9888877777888888888886 PP

  == domain 2    score: -2.3 bits;  conditional E-value: 0.94
   TIGR00491 475 frqkdPaivGvevlaGvlrvgaplikedGek 505
                 + ++  +++ ++vl+G+l+ g+ l+    +k
  MMETSP1137-20121227|3317_1 228 YDEHRGVLCLMQVLGGKLQPGTRLVSAASKK 258
                 56667789999**********9999876655 PP

>> TIGR03680  eif2g_arch: translation initiation factor 2, gamma subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.3   0.0   0.00048      0.12       7      26 ..      33      52 ..      29      89 .. 0.78
   2 !   20.0   0.0   2.7e-07     7e-05      85     211 ..     103     223 ..      99     245 .. 0.82

  Alignments for each domain:
  == domain 1    score: 9.3 bits;  conditional E-value: 0.00048
   TIGR03680  7 niglvGhvDhGkttlvkalt 26
                n  ++ hvDhGk+tl+  l 
  MMETSP1137-20121227|3317_1 33 NFCIISHVDHGKSTLADRLM 52
                67899**********98763 PP

  == domain 2    score: 20.0 bits;  conditional E-value: 2.7e-07
   TIGR03680  85 fvDaPGhetLmatmlsGaalmdgalLviaaneevPqpqtkehl.valeiigiknivivqnkidlvskekalenyeeikefvkgtvaenapiiPvsalkkvnidvllealekeiptperdldkdalllv 211
                 ++D+PGh  +   +    a  +galL ++a++ v q+qt   +  a e      i+ v nk+dl   +      e++    +    + +  + +sa+    +d+ll +l ++ p  ++ +d++ ++l+
  MMETSP1137-20121227|3317_1 103 LIDTPGHVDFSYEVSRSIAACQGALLLVDATKGV-QAQTVANFfLAFE--QDLSIIPVVNKVDLGHADV-AGTLEQMSSAFDI---DPSDTLAISAKTGLGVDALLPTLLERTPPLSAREDSPLRILL 223
                 89*****99999888888999*************.9999876504544..566799999*****87665.5667777766654...5678899*****************999999998888877765 PP

>> TIGR03594  GTPase_EngA: ribosome-associated GTPase EngA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.0     0.045        12     175     202 ..      31      58 ..       3      85 .. 0.77
   2 !   26.6   0.0   2.4e-09   6.2e-07     252     344 ..     117     206 ..     101     229 .. 0.85

  Alignments for each domain:
  == domain 1    score: 2.6 bits;  conditional E-value: 0.045
   TIGR03594 175 pikiaiiGrpNvGKStLvNallgeervi 202
                   +++ii     GKStL  +l++ + +i
  MMETSP1137-20121227|3317_1  31 IRNFCIISHVDHGKSTLADRLMEITGLI 58 
                 45789999999******99999866665 PP

  == domain 2    score: 26.6 bits;  conditional E-value: 2.4e-09
   TIGR03594 252 lkaieradvvllvlDategiseqDlkiaglileegkalvivvNKwDlvkdekeleelkkeleeklkflkfapivfiSAltgkgveklleaike 344
                  ++i+ ++ +ll++Dat+g++ q      l+ e+  +++ vvNK+Dl   +++ + + +++++ ++ ++  +++ iSA+tg gv+ ll ++ e
  MMETSP1137-20121227|3317_1 117 SRSIAACQGALLLVDATKGVQAQTVANFFLAFEQDLSIIPVVNKVDLG--HADVAGTLEQMSSAFD-IDPSDTLAISAKTGLGVDALLPTLLE 206
                 57888889999999*****999999999999999999999******99..7777777788776665.788999999****9999999987655 PP

>> TIGR03598  GTPase_YsxC: ribosome biogenesis GTP-binding protein YsxC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.0     0.081        21      10      52 ..      23      65 ..      19      68 .. 0.87
   2 !    8.8   0.0     0.001      0.26     102     182 ..     124     201 ..     115     205 .. 0.89

  Alignments for each domain:
  == domain 1    score: 2.6 bits;  conditional E-value: 0.081
   TIGR03598 10 lkqlpedklpeiafaGrSNvGKSsliNaLtnrkklartSktPG 52
                ++++p+++  + +++     GKS+l   L++   l  tS   G
  MMETSP1137-20121227|3317_1 23 VSSIPPERIRNFCIISHVDHGKSTLADRLMEITGLIGTSGSQG 65
                5688999999********************9999998887655 PP

  == domain 2    score: 8.8 bits;  conditional E-value: 0.001
   TIGR03598 102 kgvvllvDirhelkelDlellellkeakipvlvvltKaDklkkselkkalkkvkkelkkeeekvevllfSslkkegieelk 182
                 +g +llvD+ ++++++    + l+ e++++++ v++K+D l +++++ +l++++++++ + +  ++l++S++++ g++ l 
  MMETSP1137-20121227|3317_1 124 QGALLLVDATKGVQAQTVANFFLAFEQDLSIIPVVNKVD-LGHADVAGTLEQMSSAFDIDPS--DTLAISAKTGLGVDALL 201
                 6789***********************************.788899999******9999944..699*********99886 PP

>> TIGR03918  GTP_HydF: [FeFe] hydrogenase H-cluster maturation GTPase HydF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0    0.0002     0.051      83     169 ..     119     210 ..     102     225 .. 0.76

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 0.0002
   TIGR03918  83 vlektdlallvvdaeaeleeleeelleelkekkipvivvlnkidlkeeeke.....keklekkkeeevvlvsakekegieelkealiellpe 169
                  ++ +  all+vda+++++++  + +  + e+++++i v+nk+dl +++ +     ++++     ++++++sak++ g+++l  +l+e++p 
  MMETSP1137-20121227|3317_1 119 SIAACQGALLLVDATKGVQAQTVANFFLAFEQDLSIIPVVNKVDLGHADVAgtleqMSSAFDIDPSDTLAISAKTGLGVDALLPTLLERTPP 210
                 56677889999**99999988888888888999************998766653223333344567899*************9999998864 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (339 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       125  (0.0304729); expected 82.0 (0.02)
Passed bias filter:                      124  (0.0302292); expected 82.0 (0.02)
Passed Vit filter:                        23  (0.00560702); expected 4.1 (0.001)
Passed Fwd filter:                        16  (0.00390054); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              16  [number of targets reported over threshold]
# CPU time: 0.51u 0.17s 00:00:00.68 Elapsed: 00:00:00.48
# Mc/sec: 932.17
//
Query:       MMETSP1137-20121227|3318_1  [L=109]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.6e-11   40.5   0.0    7.1e-11   40.1   0.0    1.2  1  TIGR02174 CXXU_selWTH: selT/selW/selH selenoprotein domain
     0.0063   13.7   0.0     0.0066   13.6   0.0    1.1  1  TIGR00677 fadh2_euk: methylenetetrahydrofolate reductase


Domain annotation for each model (and alignments):
>> TIGR02174  CXXU_selWTH: selT/selW/selH selenoprotein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.1   0.0   3.5e-14   7.1e-11      15      61 ..      42      89 ..      39     104 .. 0.88

  Alignments for each domain:
  == domain 1    score: 40.1 bits;  conditional E-value: 3.5e-14
   TIGR02174 15 aeelkqaleeefpd.leiegenlkpdstGaFEitlngklvwsklekgg 61
                a +l+++l eef d lei+ + ++++ +GaFE+t+ g l++skl kg+
  MMETSP1137-20121227|3318_1 42 ATALSSFLAEEFGDkLEIKSNVYPGGKSGAFEVTVAGDLIHSKLTKGH 89
                6789*****************************************995 PP

>> TIGR00677  fadh2_euk: methylenetetrahydrofolate reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   0.0   3.2e-06    0.0066     105     155 ..      32      84 ..      18     104 .. 0.82

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 3.2e-06
   TIGR00677 105 feeveggfkyavdlvkyirskygdkfaigvagyPeahpeaeav..ekdleylk 155
                  e +e+  kya+ l  ++ +++gdk+ i    yP +++ a +v    dl + k
  MMETSP1137-20121227|3318_1  32 IEADEATXKYATALSSFLAEEFGDKLEIKSNVYPGGKSGAFEVtvAGDLIHSK 84 
                 5678999***************************9999886641145555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (109 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        72  (0.0175524); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.15u 0.16s 00:00:00.31 Elapsed: 00:00:00.28
# Mc/sec: 496.10
//
Query:       MMETSP1137-20121227|3320_1  [L=301]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (301 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       282  (0.068747); expected 82.0 (0.02)
Passed bias filter:                      101  (0.0246221); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.14s 00:00:00.40 Elapsed: 00:00:00.48
# Mc/sec: 827.68
//
Query:       MMETSP1137-20121227|3322_1  [L=803]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (803 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       128  (0.0312043); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.50u 0.17s 00:00:00.67 Elapsed: 00:00:00.66
# Mc/sec: 1605.87
//
Query:       MMETSP1137-20121227|3323_1  [L=270]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (270 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        87  (0.0212092); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.13s 00:00:00.34 Elapsed: 00:00:00.34
# Mc/sec: 1048.15
//
Query:       MMETSP1137-20121227|3324_1  [L=352]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.7e-12   42.8   0.0    7.4e-08   29.5   0.0    2.8  3  TIGR03417 chol_sulfatase: choline-sulfatase
  ------ inclusion threshold ------
       0.82    5.9  11.0          1    5.6   6.0    1.9  2  TIGR01348 PDHac_trf_long: dihydrolipoyllysine-residue acetyltransferase


Domain annotation for each model (and alignments):
>> TIGR03417  chol_sulfatase: choline-sulfatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.5   0.0   3.6e-11   7.4e-08     253     347 ..      13     101 ..       9     109 .. 0.88
   2 ?   -0.5   0.0     0.044        91     349     377 ..     142     170 ..     131     188 .. 0.84
   3 !    9.5   0.0   4.1e-05     0.083     399     429 ..     215     245 ..     207     283 .. 0.83

  Alignments for each domain:
  == domain 1    score: 29.5 bits;  conditional E-value: 3.6e-11
   TIGR03417 253 rayfaaisyvddkiGellevleetrladdtivvfvsdhGdmlGerGlwykmsffegsarvPllvaaperlea.grveaavstvdllPtlvelagve 347
                 r + +a++++d  +G +l +l + ++a dt+++++sdh  +  ++G     + +  ++r Pll++ p+++ +  rv++ vs++d+  t ++ a ++
  MMETSP1137-20121227|3324_1  13 RHFETALAWLDRGVGTVLWALGRRGVASDTLLILTSDHAPV--DKG-----HCYSRGTRTPLLMQWPRAIGTnVRVHSLVSHLDVAATAIDAAAID 101
                 55668999******************************987..666.....67889************99651689999************99987 PP

  == domain 2    score: -0.5 bits;  conditional E-value: 0.044
   TIGR03417 349 eevlpaldGeslvpllkgkerkdevlgey 377
                 ++  p ldG sl+p+l++++++ e+  e 
  MMETSP1137-20121227|3324_1 142 SAGGPPLDGVSLLPMLRNAQSRVEISDEV 170
                 5566889*********9999988887765 PP

  == domain 3    score: 9.5 bits;  conditional E-value: 4.1e-05
   TIGR03417 399 ceadPeqlydleadPkelenlaeepehaetl 429
                 +  d eql+dl+ dP e++nl +  ++a++ 
  MMETSP1137-20121227|3324_1 215 SYFDTEQLFDLSVDPAERRNLVRMLDEANAA 245
                 66799****************9876665554 PP

>> TIGR01348  PDHac_trf_long: dihydrolipoyllysine-residue acetyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.0     0.021        42     214     270 ..      74     132 ..      24     150 .. 0.56
   2 ?    5.6   6.0   0.00049         1     245     307 ..     241     303 ..     225     333 .. 0.63

  Alignments for each domain:
  == domain 1    score: 0.3 bits;  conditional E-value: 0.021
   TIGR01348 214 kvGdkvktGdlilvlevegaapaaaea..pakaeaaaaapaaeaeeaaaapaaakaeak 270
                  +G +v++ +l+  l+v+++a  aa+   p + +++ + p+++ +++++++++  a ++
  MMETSP1137-20121227|3324_1  74 AIGTNVRVHSLVSHLDVAATAIDAAAIdgPPPLPPPPPPPSSSSSSSSSSSSSLLAGGA 132
                 58999999999999999888765554311344444444444444444444333333333 PP

  == domain 2    score: 5.6 bits;  conditional E-value: 0.00049
   TIGR01348 245 eaaaaapaaeaeeaaaapaaakaeakapvdantendakvdhaaPavrrlarelGvdlskvkgt 307
                 ea+aa +aa   ++a a+a+a ++a+a+  a + + ++v++aa a+rrl  el  +l++  ++
  MMETSP1137-20121227|3324_1 241 EANAAERAAAGDATANATANASSTAAAAAAAAAAHISNVSEAASALRRLREELKRELAASTAA 303
                 333333344444444555555566666667777777888888888888888887777654444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (352 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       263  (0.0641151); expected 82.0 (0.02)
Passed bias filter:                      127  (0.0309605); expected 82.0 (0.02)
Passed Vit filter:                        21  (0.00511945); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.33u 0.15s 00:00:00.48 Elapsed: 00:00:00.44
# Mc/sec: 1055.91
//
Query:       MMETSP1137-20121227|3325_1  [L=597]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (597 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.15s 00:00:00.54 Elapsed: 00:00:00.50
# Mc/sec: 1575.95
//
Query:       MMETSP1137-20121227|3326_1  [L=743]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.3e-17   61.8   2.1    2.5e-17   60.9   1.5    1.4  1  TIGR02858 spore_III_AA: stage III sporulation protein AA
    3.1e-12   44.2   1.0    4.6e-12   43.7   0.1    1.6  2  TIGR01388 rnd: ribonuclease D
     0.0018   15.2   0.2     0.0036   14.2   0.1    1.4  1  TIGR02788 VirB11: P-type DNA transfer ATPase VirB11
      0.002   14.6   0.0     0.0032   13.9   0.0    1.2  1  TIGR00764 lon_rel: putative ATP-dependent protease
  ------ inclusion threshold ------
      0.013   13.0   0.1      0.024   12.2   0.0    1.3  1  TIGR01189 ccmA: heme ABC exporter, ATP-binding protein CcmA
      0.013   11.3   0.0      0.019   10.7   0.0    1.1  1  TIGR01448 recD_rel: helicase, RecD/TraA family
      0.013   12.9   0.0      0.026   11.9   0.0    1.5  1  TIGR03420 DnaA_homol_Hda: DnaA regulatory inactivator Hda
      0.014   12.9   0.9      0.025   12.1   0.1    1.8  2  TIGR03771 anch_rpt_ABC: anchored repeat-type ABC transporter, ATP-binding subunit
      0.014   10.8   0.0      0.018   10.4   0.0    1.1  1  TIGR00956 3a01205: pleiotropic drug resistance family protein
       0.02   12.2   0.0      0.036   11.3   0.0    1.4  1  TIGR03015 pepcterm_ATPase: putative secretion ATPase, PEP-CTERM locus subfamily


Domain annotation for each model (and alignments):
>> TIGR02858  spore_III_AA: stage III sporulation protein AA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.9   1.5     6e-20   2.5e-17      67     246 ..     510     679 ..     466     688 .. 0.84

  Alignments for each domain:
  == domain 1    score: 60.9 bits;  conditional E-value: 6e-20
   TIGR02858  67 GlaGkvvledkkvktiknvaslniriarevlgaaeklleylvknnrvlntliisPPqsGkttllrdlaralstGisklglkglkvgivderseiaacvkGvPqldvGlrtdvldaC..pkaeGlmllirslsPdvivvdeiGreedveallealnaGvsviatahgkdledlkkrpvlkell 246
                 G+ G         +  +++a+l ir+ r v+  a+ ++++l   ++  ++l+++ P sGktt++r  a  l++           + i+d   ei +    +P + +G    ++      ++  ++  ++  +P+v+v+deiGr+++v+a  ++ + Gv ++a+ahg+ l dl   p l+ l+
  MMETSP1137-20121227|3326_1 510 GMDGTLHRISAIYNRERKIAGLTIRLGRSVAHNADMIVDSLR--GTNRSVLVLGEPGSGKTTIIRAAAALLAEH--------HTTIIIDTSNEIGGD-GTIPHRCIGHARRMMVPSldDQSAVMVECVQNHTPHVMVIDEIGRQQEVDAARTVKRRGVRMVASAHGT-LRDLIANPELNGLV 679
                 555555544445556699***********************8..666789****************99999984........568899*99999875.67*******75555544400455566668**************************************95.89999999998886 PP

>> TIGR01388  rnd: ribonuclease D
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.0       2.8   1.2e+03     279     311 ..      26      61 ..      24      92 .. 0.54
   2 !   43.7   0.1   1.1e-14   4.6e-12      36     165 ..     195     345 ..     168     366 .. 0.77

  Alignments for each domain:
  == domain 1    score: -3.7 bits;  conditional E-value: 2.8
   TIGR01388 279 lalPedelpkalkellespgakal...lkllkklvk 311
                    P++  p++ + ++  p+++ +   +++lk+   
  MMETSP1137-20121227|3326_1  26 TYYPTARDPSVALTMMTAPEQSYVdrlIETLKTSGS 61 
                 556777778888877777765543000333333332 PP

  == domain 2    score: 43.7 bits;  conditional E-value: 1.1e-14
   TIGR01388  36 klgLiqva..dgeelaliDPlvi...idlspllelladesvvKvlHaaseDlevfknlfgvlP.kPlfDTqiaaallGlgesvgydklV......kevleveld.KsesrtD........WlaRPLtdkqleYAaaDVtyLlelyekLser 165
                 +l+L+qva  +++++ + D + +      s+l +ll+de+ vK++H    D+ ++ ++ gv+  k l+DTq++a ++     vg + +       ++ ++ e++ K ++ +D        W +RPL+ + l+YAa D   Ll+ y+ L+e 
  MMETSP1137-20121227|3326_1 195 NLSLVQVAtlSPKRVFVFDCVKLsavAVCSALNQLLRDERCVKLFHDLHMDVLALSKIGGVTEmKGLLDTQLVAEYIWAEPMVGLNDMLnrldlpQNPTKLEMKaKMNRASDghqdsnnlWERRPLSSADLRYAALDAALLLDAYKPLREL 345
                 599***984458999999*98763245679******************************996379********9887777777766661111115567777754666666666778888**************************99874 PP

>> TIGR02788  VirB11: P-type DNA transfer ATPase VirB11
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.1   8.8e-06    0.0036     144     183 ..     554     593 ..     542     599 .. 0.93

  Alignments for each domain:
  == domain 1    score: 14.2 bits;  conditional E-value: 8.8e-06
   TIGR02788 144 kkniiisGgtgsgKTTflkalvkliPkeeRlitiedteEl 183
                 ++++++ G +gsgKTT+++a   l+ +++  i i+ ++E+
  MMETSP1137-20121227|3326_1 554 NRSVLVLGEPGSGKTTIIRAAAALLAEHHTTIIIDTSNEI 593
                 5789******************************999997 PP

>> TIGR00764  lon_rel: putative ATP-dependent protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.0   7.7e-06    0.0032      29      67 ..     546     584 ..     537     609 .. 0.82

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 7.7e-06
   TIGR00764  29 vikkaakqkrnvlliGePGvGksmlakamaellpkeele 67 
                 ++ +     r vl++GePG Gk+ + +a a ll++++ +
  MMETSP1137-20121227|3326_1 546 IVDSLRGTNRSVLVLGEPGSGKTTIIRAAAALLAEHHTT 584
                 455555678************************987655 PP

>> TIGR01189  ccmA: heme ABC exporter, ATP-binding protein CcmA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   5.8e-05     0.024      28      63 ..     556     591 ..     538     611 .. 0.81

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 5.8e-05
   TIGR01189  28 alvveGpnGiGKttLLRilaGLlkpesGevelndke 63 
                  + v G+ G+GKtt++R  a Ll  ++ ++ ++ ++
  MMETSP1137-20121227|3326_1 556 SVLVLGEPGSGKTTIIRAAAALLAEHHTTIIIDTSN 591
                 68899************************9999544 PP

>> TIGR01448  recD_rel: helicase, RecD/TraA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   4.7e-05     0.019     338     367 ..     554     583 ..     516     591 .. 0.83

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 4.7e-05
   TIGR01448 338 dkvviltGGPGtGKtTvtkaiielaeeleg 367
                 ++ v++ G PG GKtT+++a ++l +e ++
  MMETSP1137-20121227|3326_1 554 NRSVLVLGEPGSGKTTIIRAAAALLAEHHT 583
                 5667778*****************999883 PP

>> TIGR03420  DnaA_homol_Hda: DnaA regulatory inactivator Hda
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   6.3e-05     0.026      35      76 ..     551     591 ..     536     629 .. 0.79

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 6.3e-05
   TIGR03420  35 akaerllylwGesgsGksHLLqAacaaaeeagksaiylplke 76 
                 + ++r++ + Ge+gsGk+ +++Aa+a ++e+ +++i ++ ++
  MMETSP1137-20121227|3326_1 551 RGTNRSVLVLGEPGSGKTTIIRAAAALLAEH-HTTIIIDTSN 591
                 4568999*******************99888.5666667655 PP

>> TIGR03771  anch_rpt_ABC: anchored repeat-type ABC transporter, ATP-binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.9   0.0       4.7   1.9e+03     142     173 ..      39      70 ..      37      72 .. 0.82
   2 ?   12.1   0.1     6e-05     0.025      10      46 ..     558     594 ..     552     607 .. 0.83

  Alignments for each domain:
  == domain 1    score: -3.9 bits;  conditional E-value: 4.7
   TIGR03771 142 tGldlpsqellvelfeelagegtailmtthdl 173
                 t +  p q  +  l+e+l + g+a+ m+   l
  MMETSP1137-20121227|3326_1  39 TMMTAPEQSYVDRLIETLKTSGSAMYMAQLGL 70 
                 67888999999999999999999999986555 PP

  == domain 2    score: 12.1 bits;  conditional E-value: 6e-05
   TIGR03771  10 gllGpnGaGkttllrailglikvakGsvkvagkssrk 46 
                  +lG  G+Gktt++ra  +l+++++ ++ +++ +   
  MMETSP1137-20121227|3326_1 558 LVLGEPGSGKTTIIRAAAALLAEHHTTIIIDTSNEIG 594
                 57999************************99865444 PP

>> TIGR00956  3a01205: pleiotropic drug resistance family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   4.5e-05     0.018      80     116 ..     547     583 ..     488     618 .. 0.83

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 4.5e-05
   TIGR00956  80 vdglikpgelvvvLGrPgsGcstlLksiasktegfkk 116
                 vd+l  + + v+vLG+PgsG++t++++ a+ + ++++
  MMETSP1137-20121227|3326_1 547 VDSLRGTNRSVLVLGEPGSGKTTIIRAAAALLAEHHT 583
                 45566677889****************9998877765 PP

>> TIGR03015  pepcterm_ATPase: putative secretion ATPase, PEP-CTERM locus subfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   8.7e-05     0.036      42     132 ..     553     639 ..     538     670 .. 0.75

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 8.7e-05
   TIGR03015  42 reGfilitGevGaGkttlvrnllkkleaekvvlaklvntkvdaedllrmvaadfGletegrdkvallreleeflieqaaegkrallvvdea 132
                 ++  +l+ Ge G+Gktt++r     l ++++++    + ++  + ++        + ++ r  v  l +  + ++e++++ +  ++v+de 
  MMETSP1137-20121227|3326_1 553 TNRSVLVLGEPGSGKTTIIRAAAALLAEHHTTIIIDTSNEIGGDGTIPHR----CIGHARRMMVPSLDDQSAVMVECVQNHTPHVMVIDEI 639
                 5666899*************998888877766644455556666665432....3456667777778888888888888888888888885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (743 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       271  (0.0660653); expected 82.0 (0.02)
Passed bias filter:                      211  (0.0514383); expected 82.0 (0.02)
Passed Vit filter:                        74  (0.01804); expected 4.1 (0.001)
Passed Fwd filter:                        10  (0.00243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.75u 0.18s 00:00:00.93 Elapsed: 00:00:01.02
# Mc/sec: 961.45
//
Query:       MMETSP1137-20121227|3327_1  [L=173]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.4e-06   22.6   0.0    7.6e-06   22.3   0.0    1.1  1  TIGR00705 SppA_67K: signal peptide peptidase SppA, 67K type
    0.00021   18.8   0.0    0.00029   18.4   0.0    1.2  1  TIGR00706 SppA_dom: signal peptide peptidase SppA, 36K type


Domain annotation for each model (and alignments):
>> TIGR00705  SppA_67K: signal peptide peptidase SppA, 67K type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.3   0.0   3.7e-09   7.6e-06     466     525 ..       1      58 [.       1      75 [. 0.81

  Alignments for each domain:
  == domain 1    score: 22.3 bits;  conditional E-value: 3.7e-09
   TIGR00705 466 veagYerFlevvskaRnlskeqvdkvAqGrvwtGedAkkvGLvDelGgldeAvakAakla 525
                 +e++ + F   vsk R +    ++kvA G+ w G dA + GLvDel   d+ + + ak+ 
  MMETSP1137-20121227|3327_1   1 IEQVLNLFKGFVSKNRPS--LDIEKVATGETWFGPDALAEGLVDELVTSDDVILRHAKEG 58 
                 678888888899998875..469***********************99999886655543 PP

>> TIGR00706  SppA_dom: signal peptide peptidase SppA, 36K type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.0   1.4e-07   0.00029     149     201 ..       2      52 ..       1      58 [. 0.80

  Alignments for each domain:
  == domain 1    score: 18.4 bits;  conditional E-value: 1.4e-07
   TIGR00706 149 nesyeqFvevvakgRnlsveevkklAdGrvftgrqalklkLvDklgslddale 201
                 ++ ++ F   v+k+R  +  ++ k+A+G +++g +al  +LvD+l + dd + 
  MMETSP1137-20121227|3327_1   2 EQVLNLFKGFVSKNR--PSLDIEKVATGETWFGPDALAEGLVDELVTSDDVIL 52 
                 556677777788988..45567788*********************9999775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (173 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        49  (0.0119454); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.19u 0.17s 00:00:00.36 Elapsed: 00:00:00.32
# Mc/sec: 713.57
//
Query:       MMETSP1137-20121227|3328_1  [L=272]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (272 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        89  (0.0216967); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.13s 00:00:00.37 Elapsed: 00:00:00.39
# Mc/sec: 920.54
//
Query:       MMETSP1137-20121227|3329_1  [L=130]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (130 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        79  (0.0192589); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.17s 00:00:00.33 Elapsed: 00:00:00.35
# Mc/sec: 490.25
//
Query:       MMETSP1137-20121227|3330_1  [L=211]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.1e-05   20.1   0.0    6.9e-05   19.7   0.0    1.3  1  TIGR00115 tig: trigger factor


Domain annotation for each model (and alignments):
>> TIGR00115  tig: trigger factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.0   1.7e-08   6.9e-05     148     207 ..      77     147 ..      65     204 .. 0.76

  Alignments for each domain:
  == domain 1    score: 19.7 bits;  conditional E-value: 1.7e-08
   TIGR00115 148 aaekgDivtidfegkv...........dGeafeggkaedfelelgsgqfipgfeeqlvGmkaGeekeikvt 207
                   e+gD+v+i+  g+              ++++g + e + +elg++++ip +ee++ Gm  G  +++ v 
  MMETSP1137-20121227|3330_1  77 MPEDGDRVVIEWSGFTigyfgrpfetkRLQQLDGEEREFYRFELGAKTVIPALEEGVRGMAEGGIRQLVVP 147
                 5689999999999955488777776666677889999**************************88877665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (211 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        61  (0.0148708); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.20u 0.16s 00:00:00.36 Elapsed: 00:00:00.55
# Mc/sec: 506.36
//
Query:       MMETSP1137-20121227|3332_1  [L=168]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (168 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        67  (0.0163335); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.12s 00:00:00.29 Elapsed: 00:00:00.28
# Mc/sec: 764.63
//
Query:       MMETSP1137-20121227|3333_1  [L=328]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.9e-61  205.4   0.0    2.5e-61  205.0   0.0    1.1  1  TIGR01258 pgm_1: phosphoglycerate mutase 1 family
    3.1e-19   66.9   0.0    2.5e-13   47.7   0.0    2.1  2  TIGR03162 ribazole_cobC: alpha-ribazole phosphatase
    3.6e-09   34.2   0.0    6.2e-09   33.4   0.0    1.3  1  TIGR03848 MSMEG_4193: probable phosphomutase, MSMEG_4193 family
     0.0028   15.3   0.0       0.01   13.6   0.0    1.8  2  TIGR00249 sixA: phosphohistidine phosphatase SixA


Domain annotation for each model (and alignments):
>> TIGR01258  pgm_1: phosphoglycerate mutase 1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  205.0   0.0   2.4e-64   2.5e-61       2     214 ..      96     305 ..      95     314 .. 0.97

  Alignments for each domain:
  == domain 1    score: 205.0 bits;  conditional E-value: 2.4e-64
   TIGR01258   2 klvlvrhGeseWnkenlftGWvdvelsekGkeeakeagkllkeeklefdvaytsllkraiktlnivldeldqlwlpvkksWrlnerhyGalqGldkaetaekyGeeqvkiwrrsfdvsPpeldekderspkkdrryaklkkkelPlteslkdtvervlPywedeiapelks.gkrvlivahGnslralvkhleklsdeeilelniPtgiPlvye 214
                 +++l+rhGes+Wn++n+ftGW+dv lse G+++a+ea++ll ee++ fd +y s lkr+ikt +++l+eld   +p++++W+lner yGal+Gl+k++t  + Ge + ++ rr    +Pp+++ ++ + p++ +  + +  + +P  es++dt  rv+Pyw+dei p+l++ gk vli++  n lr+l+  +++l  ++ +el+iP g+P+ ++
  MMETSP1137-20121227|3333_1  96 QVILLRHGESSWNDLNRFTGWHDVPLSELGEQQAVEAARLLLEEGICFDHVYCSKLKRTIKTSWLLLEELDAFDIPITQAWQLNERMYGALTGLNKKATRLQLGELHYEQLRR----EPPPMEDDSCYDPSRGSVGRGVPPELMPRKESFEDTTRRVMPYWNDEILPRLHEtGKSVLIISSKNLLRSLIVGITDLPIDQAVELDIPNGMPIAFN 305
                 689**************************************************************************************************************....6***************************************************7549**************************************997 PP

>> TIGR03162  ribazole_cobC: alpha-ribazole phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.7   0.0   2.5e-16   2.5e-13       1      86 [.      97     188 ..      97     200 .. 0.90
   2 !   17.3   0.0   5.4e-07   0.00055     111     172 ..     235     300 ..     230     304 .. 0.88

  Alignments for each domain:
  == domain 1    score: 47.7 bits;  conditional E-value: 2.5e-16
   TIGR03162   1 lyLiRHgevevnkgkcY.GqtDvpLaekgeeqaaalrekl..edvkfdavvsSplsRcrelAella...eklklpiekddrLrEmdfGdwEg 86 
                 ++L+RHge  +n  +++ G +DvpL+e ge+qa ++++ l  e   fd+v++S l+R+ +++ ll    ++ ++pi++  +L+E  +G+  g
  MMETSP1137-20121227|3333_1  97 VILLRHGESSWNDLNRFtGWHDVPLSELGEQQAVEAARLLleEGICFDHVYCSKLKRTIKTSWLLLeelDAFDIPITQAWQLNERMYGALTG 188
                 79********************************99999988999******************999333445689999999***99998766 PP

  == domain 2    score: 17.3 bits;  conditional E-value: 5.4e-07
   TIGR03162 111 vpgGEsvadfsqRveefleelake....ekenvlivtHgGvirallahllglpleqllsieveygs 172
                 +p  Es++d ++Rv+  +++ +       +++vli++    +r l++ + +lp++q++++++++g 
  MMETSP1137-20121227|3333_1 235 MPRKESFEDTTRRVMPYWNDEILPrlheTGKSVLIISSKNLLRSLIVGITDLPIDQAVELDIPNGM 300
                 6899*************987543335557899******************************9995 PP

>> TIGR03848  MSMEG_4193: probable phosphomutase, MSMEG_4193 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.4   0.0   6.1e-12   6.2e-09       2      91 ..      97     190 ..      96     207 .. 0.88

  Alignments for each domain:
  == domain 1    score: 33.4 bits;  conditional E-value: 6.1e-12
   TIGR03848   2 vllvrhgrstantaktLaGrtpGveLderGreqaaalaerl..adlpiaaivssPlercretveaiaear...glevavderltevdYGdWtGre 91 
                 v+l+rhg s+ n  ++++G+ + v L+e G +qa ++a+ l  +++  +++++s l+r+ +t   ++e++    ++++   +l+e  YG  tG +
  MMETSP1137-20121227|3333_1  97 VILLRHGESSWNDLNRFTGWHD-VPLSELGEQQAVEAARLLleEGICFDHVYCSKLKRTIKTSWLLLEELdafDIPITQAWQLNERMYGALTGLN 190
                 9*******************97.*************998885557999******************9998766778888899********99954 PP

>> TIGR00249  sixA: phosphohistidine phosphatase SixA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   0.0   9.7e-06      0.01       2      69 ..      96     167 ..      95     177 .. 0.84
   2 ?   -1.4   0.0       0.4   4.1e+02      94     113 ..     259     278 ..     246     284 .. 0.70

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 9.7e-06
   TIGR00249   2 elylmrHGeAkekaa....sDkeRqLtkkGkdeaervaqwLkkagveldrilvSplvRAeqtaeivadalde 69 
                 ++ l+rHGe   ++       ++ +L++ G ++a   a  L ++g+ +d ++ S l R  +t   + ++ld+
  MMETSP1137-20121227|3333_1  96 QVILLRHGESSWNDLnrftGWHDVPLSELGEQQAVEAARLLLEEGICFDHVYCSKLKRTIKTSWLLLEELDA 167
                 578999**99877644555667899**********************************9998887777765 PP

  == domain 2    score: -1.4 bits;  conditional E-value: 0.4
   TIGR00249  94 lkeegvksvllvsHlPllge 113
                   +e+ ksvl++s   ll  
  MMETSP1137-20121227|3333_1 259 RLHETGKSVLIISSKNLLRS 278
                 3466789*****98777655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (328 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        76  (0.0185275); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.25u 0.16s 00:00:00.41 Elapsed: 00:00:00.44
# Mc/sec: 983.92
//
Query:       MMETSP1137-20121227|3334_1  [L=253]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.9e-18   62.5   0.6    1.5e-17   61.8   0.4    1.3  1  TIGR00741 yfiA: ribosomal subunit interface protein


Domain annotation for each model (and alignments):
>> TIGR00741  yfiA: ribosomal subunit interface protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.8   0.4   3.7e-21   1.5e-17       6     100 ..      46     149 ..      43     151 .. 0.90

  Alignments for each domain:
  == domain 1    score: 61.8 bits;  conditional E-value: 3.7e-21
   TIGR00741   6 rgknveitealreyveeklar.lerylkeiievdvvlsveknrrrq.......fkvevtvklkgg.viraeeesedlYaAidkaldkLerqLrklkekrkekir 100
                 +g++++ t+al +y ++k+ + lery++ + ++ ++++ve+  + +       + +e+t+   +  vir e++s+d+Ya++dk+ d+L r Lrk+k++ ++k++
  MMETSP1137-20121227|3334_1  46 TGNDLTLTPALSKYANDKVGKyLERYDDVLQSASLQMKVEHRGHDRehqgldaHIAEITATCVDKqVIRVEQSSDDMYASLDKLSDRLGRVLRKYKDRKNSKRS 149
                 79******************************9999988887765568899988899998876656*********************************99975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (253 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       193  (0.0470502); expected 82.0 (0.02)
Passed bias filter:                      144  (0.0351048); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.23u 0.13s 00:00:00.36 Elapsed: 00:00:00.37
# Mc/sec: 902.52
//
Query:       MMETSP1137-20121227|3335_1  [L=597]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (597 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       107  (0.0260848); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.12s 00:00:00.50 Elapsed: 00:00:00.43
# Mc/sec: 1832.50
//
Query:       MMETSP1137-20121227|3336_1  [L=115]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (115 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.15s 00:00:00.31 Elapsed: 00:00:00.33
# Mc/sec: 459.96
//
Query:       MMETSP1137-20121227|3337_1  [L=437]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.5e-28   96.2   0.0    6.3e-28   95.7   0.0    1.2  1  TIGR00005 rluA_subfam: pseudouridine synthase, RluA family
    3.8e-19   66.6   0.0    1.2e-18   65.0   0.0    1.8  1  TIGR01621 RluA-like: pseudouridine synthase Rlu family protein, TIGR01621
     0.0024   15.5   0.0     0.0045   14.6   0.0    1.5  1  TIGR00093 TIGR00093: pseudouridine synthase


Domain annotation for each model (and alignments):
>> TIGR00005  rluA_subfam: pseudouridine synthase, RluA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.7   0.0   4.6e-31   6.3e-28      74     277 ..     171     380 ..     117     400 .. 0.81

  Alignments for each domain:
  == domain 1    score: 95.7 bits;  conditional E-value: 4.6e-31
   TIGR00005  74 dilfeDed..ilvidKPsglvvhptgg..ye.kntvlnallahlkeel..vsrleivhRLDrdTSGllvvaktekaleeLkeqlkektvkkeYvalvkgefkskegtvdaplarvenkkglvavakssgkeavTvfkvler.........dekaslvelkllTGRtHQiRVHlqylghplagDplYgnksvkgksleaeaklkrqaLhaselgfthpat..g 277
                  i+ eDed  +++++KP ++ +  + +  ++ + ++   l  +++  +     +++vh LD  TSG+l+ a +++a++ L+  ++e+ + k Y alv g ++ ++ +v   ++ +++++ + +v+k  gk++ T   v +r          ++a+lv l + TGR HQ+R H++++ghp++gD +Y+ +             +r +Lha ++++ +p     
  MMETSP1137-20121227|3337_1 171 SIVAEDEDxgVIAVNKPWDVRMSNKDEpqWQgEISMQGWLGEARPATRseEGHVRFVHNLDFATSGVLLAATSHEAAAYLSLLFRERRCLKMYAALVFGWPEWEHRNVTDRIQ-INQRRFKQRVSKG-GKKSHTEAFVAARgwlrxaphrGRRATLVWLIPHTGRRHQLRLHMAHIGHPIVGDFTYAGDA----------GCYRTFLHACAIRLPRPDAraA 380
                 68888887447899*****9887655411441335566677777755566689**********************************************77788888888775.6778888999997.******9887777677666666789**********************************854..........4789999999999999876442 PP

>> TIGR01621  RluA-like: pseudouridine synthase Rlu family protein, TIGR01621
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.0   0.0   8.8e-22   1.2e-18      36     183 ..     216     372 ..     179     384 .. 0.80

  Alignments for each domain:
  == domain 1    score: 65.0 bits;  conditional E-value: 8.8e-22
   TIGR01621  36 akqlgvekvylvhrldkvtsGilllalnaesaselsrlfaekkikktylalsdkkpkkkqGliiGdme......ksrega.wklvrskenpaitrfesvsiaeklr..lfilkphtGkthqlrvalkslGsailGdslygkaeesdrtylhafklef 183
                 a++ ++++v +vh ld  tsG+ll a   e+a+ ls lf e++  k+y al    p+     ++  ++      k r +   k  +++  +a   +   +   + r  l  l phtG+ hqlr+ +  +G +i+Gd  y++     rt+lha ++++
  MMETSP1137-20121227|3337_1 216 ATRSEEGHVRFVHNLDFATSGVLLAATSHEAAAYLSLLFRERRCLKMYAALVFGWPEWEHRNVTDRIQinqrrfKQRVSKgGKKSHTEAFVAARGWLRXAPHRGRRatLVWLIPHTGRRHQLRLHMAHIGHPIVGDFTYAGDAGCYRTFLHACAIRL 372
                 67788999*******************************************99999877666655444111111333333123444444455555666666666664467789****************************99**********9986 PP

>> TIGR00093  TIGR00093: pseudouridine synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.0   3.3e-06    0.0045      30     136 ..     223     349 ..     185     351 .. 0.78

  Alignments for each domain:
  == domain 1    score: 14.6 bits;  conditional E-value: 3.3e-06
   TIGR00093  30 klaavGRLDrdseGlllltddgelqh..rlthpekevektYlvqvegsvtdedlealrkGvkledektkpaklklikepel...................ktklrvtlteGrnrqvrRltaavglevl 136
                 ++  v  LD++++G+ll +++ e ++   l+ +e+++ k Y++ v+g ++ e+  ++   +++++   k+   k  k+ ++                    t + ++   Gr +q+r  +a++g +++
  MMETSP1137-20121227|3337_1 223 HVRFVHNLDFATSGVLLAATSHEAAAylSLLFRERRCLKMYAALVFGWPEWEHR-NVTDRIQINQRRFKQRVSKGGKKSHTeafvaargwlrxaphrgrrATLVWLIPHTGRRHQLRLHMAHIGHPIV 349
                 5666778**********9888776652267899****************99875.5666799999887766665555555556789999999999999866677778889999999999999998875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (437 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        65  (0.0158459); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.30u 0.15s 00:00:00.44 Elapsed: 00:00:00.41
# Mc/sec: 1406.81
//
Query:       MMETSP1137-20121227|3338_1  [L=168]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (168 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        86  (0.0209654); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.15s 00:00:00.32 Elapsed: 00:00:00.36
# Mc/sec: 615.95
//
Query:       MMETSP1137-20121227|3339_1  [L=150]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (150 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        64  (0.0156021); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.13s 00:00:00.29 Elapsed: 00:00:00.56
# Mc/sec: 347.34
//
Query:       MMETSP1137-20121227|3340_1  [L=266]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (266 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        79  (0.0192589); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.18s 00:00:00.41 Elapsed: 00:00:00.39
# Mc/sec: 900.23
//
Query:       MMETSP1137-20121227|3341_1  [L=155]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.5e-33  113.0   0.0    1.9e-33  112.7   0.0    1.1  1  TIGR00049 TIGR00049: iron-sulfur cluster assembly accessory protein
    2.1e-33  112.6   0.1    2.6e-33  112.3   0.0    1.1  1  TIGR01997 sufA_proteo: FeS assembly scaffold SufA
    1.2e-25   87.6   0.0    1.5e-25   87.3   0.0    1.1  1  TIGR02011 IscA: iron-sulfur cluster assembly protein IscA
    9.9e-07   26.6   0.0    1.2e-06   26.3   0.0    1.1  1  TIGR03341 YhgI_GntY: IscR-regulated protein YhgI
     0.0097   12.2   0.1      0.016   11.5   0.0    1.4  1  TIGR03248 galactar-dH20: galactarate dehydratase
  ------ inclusion threshold ------
      0.027   11.4   0.0      0.038   10.9   0.0    1.2  1  TIGR00536 hemK_fam: methyltransferase, HemK family


Domain annotation for each model (and alignments):
>> TIGR00049  TIGR00049: iron-sulfur cluster assembly accessory protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  112.7   0.0   2.8e-36   1.9e-33       2     106 .]      40     146 ..      39     146 .. 0.96

  Alignments for each domain:
  == domain 1    score: 112.7 bits;  conditional E-value: 2.8e-36
   TIGR00049   2 tltdkaakkikelleeekee..nkglrvgvkegGCsGlkykleleeekeedDevvekdgvkvvvdskslellegleidyveellgsgFkfsNPnakssCgCgkSFsv 106
                 +lt++aak+i+ell++++e+   +++rvg+k++GC+Gl+y++++++ek++ +e v ++g++v+v +k+l ++ g+++dyve+ l s+F+f+NPna +sCgCg+SF+v
  MMETSP1137-20121227|3341_1  40 QLTESAAKRISELLAKRREHepVTAVRVGIKSRGCNGLSYTMNYATEKQKLEEEVVQHGATVYVAPKALMHIIGTTMDYVEDDLASEFVFHNPNADASCGCGESFTV 146
                 89***********999877655899********************************************************************************85 PP

>> TIGR01997  sufA_proteo: FeS assembly scaffold SufA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  112.3   0.0   3.8e-36   2.6e-33       1     107 []      37     146 ..      37     146 .. 0.95

  Alignments for each domain:
  == domain 1    score: 112.3 bits;  conditional E-value: 3.8e-36
   TIGR01997   1 avleltdaaatrvrelvkkreea...vgirlsvkktGcaGleyalelvsepkeddvllekdGakvfvapeallflkGtevdfvkktlrqglkfnnPnatsacGcGesvel 107
                 av++lt++aa+r+ el++kr e+   + +r+++k  Gc Gl+y+++  +e ++ ++ + ++Ga v+vap+al+ + Gt++d+v+++l ++++f+nPna + cGcGes+ +
  MMETSP1137-20121227|3341_1  37 AVMQLTESAAKRISELLAKRREHepvTAVRVGIKSRGCNGLSYTMNYATEKQKLEEEVVQHGATVYVAPKALMHIIGTTMDYVEDDLASEFVFHNPNADASCGCGESFTV 146
                 689*****************887333589************************999999************************************************975 PP

>> TIGR02011  IscA: iron-sulfur cluster assembly protein IscA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.3   0.0   2.2e-28   1.5e-25       2     105 .]      40     146 ..      39     146 .. 0.93

  Alignments for each domain:
  == domain 1    score: 87.3 bits;  conditional E-value: 2.2e-28
   TIGR02011   2 tlteaaakrvnsflanrgkg...lglrlgvktsgcsgmayvlefvdeaddddlvfedkgvkividakslvyldgiqldfvkeglnegfkfenpnvkdecgcgesfhv 105
                  lte+aakr+ + la+r        +r+g+k+ gc g++y++++  e+++ ++   ++g+ +++ +k+l+++ g+ +d+v + l   f f+npn+  +cgcgesf+v
  MMETSP1137-20121227|3341_1  40 QLTESAAKRISELLAKRREHepvTAVRVGIKSRGCNGLSYTMNYATEKQKLEEEVVQHGATVYVAPKALMHIIGTTMDYVEDDLASEFVFHNPNADASCGCGESFTV 146
                 69**************9864233789*******************999987777789************************************************98 PP

>> TIGR03341  YhgI_GntY: IscR-regulated protein YhgI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.3   0.0   1.7e-09   1.2e-06       2      97 ..      40     136 ..      39     151 .. 0.83

  Alignments for each domain:
  == domain 1    score: 26.3 bits;  conditional E-value: 1.7e-09
   TIGR03341   2 titeaaqeylakllekqe...egikirvfvvnPGtpkaecgvayckpdeveeediklefdefsayvdaksvpfledaeidfvtdklGgqltlkaPnakv 97 
                 ++te+a + +++ll+k++   + +++rv +++ G +    ++ y+ ++++   ++++  ++ ++yv  k++ ++  +++d+v+d l + ++++ Pna +
  MMETSP1137-20121227|3341_1  40 QLTESAAKRISELLAKRRehePVTAVRVGIKSRGCNGLSYTMNYATEKQKL--EEEVVQHGATVYVAPKALMHIIGTTMDYVEDDLASEFVFHNPNADA 136
                 789************987332458999999999999888888888765544..4455667899*********************************975 PP

>> TIGR03248  galactar-dH20: galactarate dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.5   0.0   2.4e-05     0.016     223     301 ..      22     101 ..       3     107 .. 0.75

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 2.4e-05
   TIGR03248 223 aavlrlqdeklGfaemveailelaeerlkklnarkretvpaselvvGlqcGGsdafsGvtanpavGf..aadllvraGatv 301
                   v+  ++ +   ++ v ++ e a +r+++l a++re  p++ + vG++  G + +s  t n a       + +v+ Gatv
  MMETSP1137-20121227|3341_1  22 GRVIVGKERSRPTSKAVMQLTESAAKRISELLAKRREHEPVTAVRVGIKSRGCNGLSY-TMNYATEKqkLEEEVVQHGATV 101
                 5566666666677889999*********************************999984.5665544311345566666666 PP

>> TIGR00536  hemK_fam: methyltransferase, HemK family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   5.5e-05     0.038      33      72 ..      24      63 ..       4      65 .. 0.91

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 5.5e-05
   TIGR00536 33 lslkkerklllaflkeelteeekerlkelverrlegvPva 72
                + ++ker++++  +  +lte+  +r+ el+ +r+e++Pv 
  MMETSP1137-20121227|3341_1 24 VIVGKERSRPTSKAVMQLTESAAKRISELLAKRREHEPVT 63
                567899********************************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (155 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       166  (0.0404681); expected 82.0 (0.02)
Passed bias filter:                      134  (0.032667); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.19u 0.15s 00:00:00.34 Elapsed: 00:00:00.30
# Mc/sec: 681.94
//
Query:       MMETSP1137-20121227|3342_1  [L=164]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.88    6.0   8.1        1.1    5.7   5.6    1.3  1  TIGR01645 half-pint: poly-U binding splicing factor, half-pint family


Domain annotation for each model (and alignments):
>> TIGR01645  half-pint: poly-U binding splicing factor, half-pint family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   5.6   0.00028       1.1     276     317 ..     112     154 ..      68     162 .. 0.80

  Alignments for each domain:
  == domain 1    score: 5.7 bits;  conditional E-value: 0.00028
   TIGR01645 276 kavtPPdallqPatvsalPaaaavaaa.aatakitaaeavaga 317
                 ++ + Pd ll+  ++ al aa+a aaa a++a +taa a+++a
  MMETSP1137-20121227|3342_1 112 RSEAGPDQLLAAGASYALXAAVATAAAaAIAAAVTAATAATAA 154
                 5667899999999999999999887651567778887776543 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (164 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       278  (0.0677718); expected 82.0 (0.02)
Passed bias filter:                      132  (0.0321794); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.20u 0.20s 00:00:00.40 Elapsed: 00:00:00.49
# Mc/sec: 441.76
//
Query:       MMETSP1137-20121227|3343_1  [L=502]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      1e-11   42.7   0.2    1.3e-10   39.0   0.0    2.3  2  TIGR02191 RNaseIII: ribonuclease III


Domain annotation for each model (and alignments):
>> TIGR02191  RNaseIII: ribonuclease III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.0   0.0   3.2e-14   1.3e-10      35      81 ..     123     169 ..     114     181 .. 0.91
   2 ?    0.9   0.0     0.014        58     152     214 ..     402     469 ..     387     475 .. 0.78

  Alignments for each domain:
  == domain 1    score: 39.0 bits;  conditional E-value: 3.2e-14
   TIGR02191  35 erLEFLGDavLelvvaeyLfkkfpkakeGeltklraklVseeslael 81 
                 +rLEFLGDavL+++v+  +  ++   +eG lt++r+ lVs+++la++
  MMETSP1137-20121227|3343_1 123 QRLEFLGDAVLQCCVSVEVALRHTLDHEGALTTARSVLVSNRALAAC 169
                 9*****************************************99874 PP

  == domain 2    score: 0.9 bits;  conditional E-value: 0.014
   TIGR02191 152 dyKtaLqelaqaekkvlpeYelikeegpahdk..eFevevvve.geilgsgkgk..skkeaeqaaAka 214
                  +K+a  +l+q++k  l +Y  +  +g ++++   + +e+  + ++ lgs +g+    k+a ++aA +
  MMETSP1137-20121227|3343_1 402 AHKSAVNQLLQKRKINLATYCEEVFTGGSNAPfvCYVYESGTQrQKLLGSSQGTlcLNKKASKDAAYR 469
                 57999999************888888888888889999999998899999998744355555555543 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (502 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       128  (0.0312043); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.15s 00:00:00.48 Elapsed: 00:00:00.46
# Mc/sec: 1440.40
//
Query:       MMETSP1137-20121227|3344_1  [L=353]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (353 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        52  (0.0126767); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.13s 00:00:00.37 Elapsed: 00:00:00.52
# Mc/sec: 896.00
//
Query:       MMETSP1137-20121227|3345_1  [L=962]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.8e-07   26.0   0.0      1e-06   25.0   0.0    1.4  1  TIGR00605 rad4: DNA repair protein rad4
     0.0092   12.7   0.0      0.046   10.4   0.0    1.8  2  TIGR02279 PaaC-3OHAcCoADH: 3-hydroxyacyl-CoA dehydrogenase PaaC


Domain annotation for each model (and alignments):
>> TIGR00605  rad4: DNA repair protein rad4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.0   0.0   4.9e-10     1e-06     713     790 ..     295     372 ..     276     384 .. 0.84

  Alignments for each domain:
  == domain 1    score: 25.0 bits;  conditional E-value: 4.9e-10
   TIGR00605 713 dmwvevfseveekWvcvDllkgklhkkltirknatkglayVfafdddqsvkDVTarYcaswst.tvrkarvekawldet 790
                  +w e +s   e+Wv  D+ ++ l  +lt     +k+l y+fa+ +d  v DV +rY+ ++   ++r+     aw+  +
  MMETSP1137-20121227|3345_1 295 HVWAEFYSRGLERWVHADPCEAALDAPLTYEAGWGKKLSYIFAYTHDS-VVDVARRYTRNFADmLTRRDLAPEAWISAK 372
                 68*******************************************996.56*********9996777766666666655 PP

>> TIGR02279  PaaC-3OHAcCoADH: 3-hydroxyacyl-CoA dehydrogenase PaaC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.0     0.048        99      31      86 ..     119     177 ..     101     216 .. 0.79
   2 !   10.4   0.0   2.2e-05     0.046     435     496 ..     768     832 ..     762     838 .. 0.77

  Alignments for each domain:
  == domain 1    score: -0.6 bits;  conditional E-value: 0.048
   TIGR02279  31 vllydiraealar..avagiekdlkslvekgk.ldaaeaeatlkrlvPvaalealadag 86 
                 ++l+ +++ ala   + a +++ ++s ++  k  + ++++     ++Pv++l++ a a+
  MMETSP1137-20121227|3345_1 119 MKLFATSPRALATseGAAKLQRMFASGLQTMKqHEDKQRQSKALSIIPVETLRERARAN 177
                 5778888887775115566777777765554414556677788899*******999885 PP

  == domain 2    score: 10.4 bits;  conditional E-value: 2.2e-05
   TIGR02279 435 kgvasardidtamraGvnyPkG.PlawaaqlGi..arvlrvlenlqehyGeeryrpssllrrkal 496
                 + +  a+d++ta++    +P    +a  +++ +  + vlrvl n+++h  e++yr+ +l + ka 
  MMETSP1137-20121227|3345_1 768 RTLPDAQDLNTAVQRLKRHPPSsEVAAXSEVAAatQTVLRVLSNVRDHPSEDKYRTVKLAKLKAR 832
                 5567799999998666665544388888888652278*******************999887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (962 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       105  (0.0255973); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.53u 0.20s 00:00:00.73 Elapsed: 00:00:00.65
# Mc/sec: 1953.44
//
Query:       MMETSP1137-20121227|3346_1  [L=270]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (270 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        66  (0.0160897); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.16s 00:00:00.33 Elapsed: 00:00:00.33
# Mc/sec: 1079.91
//
Query:       MMETSP1137-20121227|3347_1  [L=277]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.1e-14   50.9   0.0    6.6e-14   50.2   0.0    1.3  1  TIGR00482 TIGR00482: nicotinate (nicotinamide) nucleotide adenylyltransferase
    0.00022   19.2   0.1    0.00036   18.5   0.0    1.4  1  TIGR00125 cyt_tran_rel: cytidyltransferase-related domain
  ------ inclusion threshold ------
      0.028   12.1   0.0       0.06   11.0   0.0    1.5  1  TIGR02199 rfaE_dom_II: bifunctional protein RfaE, domain II


Domain annotation for each model (and alignments):
>> TIGR00482  TIGR00482: nicotinate (nicotinamide) nucleotide adenylyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.2   0.0   4.8e-17   6.6e-14       2     176 ..      50     235 ..      49     247 .. 0.83

  Alignments for each domain:
  == domain 1    score: 50.2 bits;  conditional E-value: 4.8e-17
   TIGR00482   2 fgGsFdPihlgHlllaeealealdldklivvpsaispvkkteekas..........sehRlamlklaiekepklevdeveieras.....ksytidtlkelkkklk......kaelaliiGaDalkslekWk.dieellekvelviveRpgkelkkallekaikllkekrnlvllkepaveiSStkiRkairegksv 176
                   G+ +P+h+gH++++++a ++l++d ++v+  + sp  +++  ++          +  Rl+ +++a++ +p ++v ++e ++ +     + +    l+ +   l+        e ++++G+D+ ++ + W+ d+ +     ++v+v+R g+ l +++  +      +++  +  ++++  +SSt+ R+ai+++  v
  MMETSP1137-20121227|3347_1  50 TTGAMNPLHQGHIVMLHQAXDRLEADGIAVLGAFLSPSHDNYILQKtkrartlalsATFRLHVAQQAVRGDPLVSVGAWEAQQRGgwpdfP-EVCAALQLALDSLPetqvrgRIECFYVCGSDHANKCMLWNgDVGD-----GVVVVPRMGDRLYGSEDTSR-----RCYVATPTSDNTAALSSTRLRAAIQQRDAV 235
                 5799************************************998888889999**99999**********************9998554431.33344444444444777777788****************977765.....89*******99998777643.....355566667799*************98765 PP

>> TIGR00125  cyt_tran_rel: cytidyltransferase-related domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.0   2.7e-07   0.00036       4      28 ..      50      74 ..      47     113 .. 0.77

  Alignments for each domain:
  == domain 1    score: 18.5 bits;  conditional E-value: 2.7e-07
   TIGR00125  4 fvGtFdplHlGHlklleeakelfde 28
                + G ++plH+GH+ +l++a    + 
  MMETSP1137-20121227|3347_1 50 TTGAMNPLHQGHIVMLHQAXDRLEA 74
                78*****************876665 PP

>> TIGR02199  rfaE_dom_II: bifunctional protein RfaE, domain II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   4.4e-05      0.06       9      36 ..      43      70 ..      36      80 .. 0.86

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 4.4e-05
   TIGR02199  9 kgkkvvftnGcfDllhaGhvkyLekark 36
                kg  v +t G  + lh+Gh+ +L++a  
  MMETSP1137-20121227|3347_1 43 KGSAVLLTTGAMNPLHQGHIVMLHQAXD 70
                567899*******************965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (277 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        73  (0.0177962); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.18u 0.18s 00:00:00.36 Elapsed: 00:00:00.37
# Mc/sec: 988.13
//
Query:       MMETSP1137-20121227|3348_1  [L=489]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (489 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        57  (0.0138957); expected 82.0 (0.02)
Passed bias filter:                       42  (0.0102389); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.21s 00:00:00.46 Elapsed: 00:00:00.46
# Mc/sec: 1403.10
//
Query:       MMETSP1137-20121227|3350_1  [L=482]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (482 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       163  (0.0397367); expected 82.0 (0.02)
Passed bias filter:                      118  (0.0287665); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.23s 00:00:00.55 Elapsed: 00:00:00.41
# Mc/sec: 1551.68
//
Query:       MMETSP1137-20121227|3351_1  [L=164]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (164 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        54  (0.0131643); expected 82.0 (0.02)
Passed bias filter:                       44  (0.0107265); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.15s 00:00:00.31 Elapsed: 00:00:00.30
# Mc/sec: 721.54
//
Query:       MMETSP1137-20121227|3353_1  [L=579]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.48    7.5   5.6       0.86    6.6   3.9    1.3  1  TIGR03991 alt_bact_glmU: UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase
        3.2    5.3   6.9        5.5    4.5   4.8    1.3  1  TIGR01102 yscR: type III secretion apparatus protein, YscR/HrcR family
        5.2    4.0  17.8      0.088    9.9   7.2    1.6  2  TIGR03752 conj_TIGR03752: integrating conjugative element protein, PFL_4705 family


Domain annotation for each model (and alignments):
>> TIGR03991  alt_bact_glmU: UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   3.9   0.00063      0.86      52     142 ..     221     314 ..     183     340 .. 0.70

  Alignments for each domain:
  == domain 1    score: 6.6 bits;  conditional E-value: 0.00063
   TIGR03991  52 rlteevleeryPevlvnelle...edvllvnarllpdealae.elveealkagealvqkdnlsaalladkikslelaeeleieveeefrllenlw 142
                  l +++l++  P    ++l+     d l+v+++++++e++ + ++ +++l+ +++ +q+++ +++l +++ ++ +l++++  +++++  ll+++ 
  MMETSP1137-20121227|3353_1 221 ALCQALLAQTVPGSAEHTLMSsnlRDFLYVQQQVMAQEQQRQeQQRQQQLQIQQQQLQQQR-EEQLRQQQLRQQQLQQQQLQQQQQQQLLLQQQQ 314
                 3556778888898888777777789999*****9998876651556778888888888888.778888888888877776666666666665544 PP

>> TIGR01102  yscR: type III secretion apparatus protein, YscR/HrcR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   4.8     0.004       5.5      33     123 ..     224     315 ..     212     334 .. 0.70

  Alignments for each domain:
  == domain 1    score: 4.5 bits;  conditional E-value: 0.004
   TIGR01102  33 nalGvqqvPp..nmalygialilslfvmaPvllevkerleeeevelsdidklkklldealepyreflkknteeeevaffeesakklwpkekkd 123
                  al  q+vP     +l +  l   l+v + v+ + ++r e+++ +  +i++  +l ++  e +r+   ++ + ++++  ++++++l+ +++++
  MMETSP1137-20121227|3353_1 224 QALLAQTVPGsaEHTLMSSNLRDFLYVQQQVMAQEQQRQEQQRQQQLQIQQQ-QLQQQREEQLRQQQLRQQQLQQQQLQQQQQQQLLLQQQQQ 315
                 678889999622568999999999**************99999888887765.4555556666666666666666666666666655444332 PP

>> TIGR03752  conj_TIGR03752: integrating conjugative element protein, PFL_4705 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.5      0.34   4.7e+02     208     239 ..     112     145 ..      90     149 .. 0.47
   2 ?    9.9   7.2   6.4e-05     0.088      78     157 ..     256     334 ..     235     391 .. 0.65

  Alignments for each domain:
  == domain 1    score: -2.4 bits;  conditional E-value: 0.34
   TIGR03752 208 rkkkaleavakae..eaekakskekkakpvyTip 239
                 + +++++ ++ ++  +a++a+ + k+a+ v T+p
  MMETSP1137-20121227|3353_1 112 DRQSRTQPKSAHAtaKAAQATREVKAAREVKTVP 145
                 2222222222222223345555555666666666 PP

  == domain 2    score: 9.9 bits;  conditional E-value: 6.4e-05
   TIGR03752  78 lekeNeklkkenerlkkreesvderiqqaleaekkelkkekeqlkeeqakleelldelqkkledvaaekesseedlpvgl 157
                  +++ ++ ++++++l+ ++++++++ +++l++++ + ++ ++q + +q++ ++ll ++q++ +  a+++ s +++ p g+
  MMETSP1137-20121227|3353_1 256 AQEQQRQEQQRQQQLQIQQQQLQQQREEQLRQQQLRQQQLQQQ-QLQQQQQQQLLLQQQQQAALAAHSAPSVAASAPAGV 334
                 2333344444566667777777777777776644333333332.223333333444444444445555555556666554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (579 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       775  (0.188932); expected 82.0 (0.02)
Passed bias filter:                      190  (0.0463189); expected 82.0 (0.02)
Passed Vit filter:                        46  (0.011214); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.66u 0.19s 00:00:00.85 Elapsed: 00:00:00.65
# Mc/sec: 1175.72
//
Query:       MMETSP1137-20121227|3354_1  [L=267]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (267 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        55  (0.0134081); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.16s 00:00:00.39 Elapsed: 00:00:00.30
# Mc/sec: 1174.70
//
Query:       MMETSP1137-20121227|3355_1  [L=215]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.022   10.9   6.4      0.025   10.8   4.5    1.1  1  TIGR00926 2A1704: oligopeptide transporter, peptide:H+ symporter


Domain annotation for each model (and alignments):
>> TIGR00926  2A1704: oligopeptide transporter, peptide:H+ symporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   4.5     6e-06     0.025     392     510 ..      65     181 ..      26     213 .. 0.64

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 6e-06
   TIGR00926 392 srkvalvedllskeekesksgieskesskkpngddeldidl.sadglagevsklkkevelekkkskvllvsqdglklyevaaktekaktekGelsirlvstlnkeggaialskeesesve 510
                 +r+    ++ +      +ks ie k  s++ + d+++  +l  + +l+g+  kl+++ + ++kk +    ++   k+ + ++k++  ++++Ge++ ++v+  +k g +i+ s e+++   
  MMETSP1137-20121227|3355_1  65 QRELNEAKQATDD-LRIVKSSIEAKVASTQKDLDKTFVLNLvRKFELSGQIDKLNQAIKEQDKKIEK--AAKVEDKYLQALNKQQAYAQKQGEIADGIVQEATKAGNKIKESAEAKSAKL 181
                 2222222222111.12346667777666666778888887615679999999999887766555554..444445999***************************999998776554332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (215 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       559  (0.136275); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.23u 0.11s 00:00:00.34 Elapsed: 00:00:00.35
# Mc/sec: 810.79
//
Query:       MMETSP1137-20121227|3356_1  [L=947]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (947 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        97  (0.023647); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.54u 0.13s 00:00:00.67 Elapsed: 00:00:00.76
# Mc/sec: 1644.65
//
Query:       MMETSP1137-20121227|3358_1  [L=188]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (188 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       115  (0.0280351); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.14s 00:00:00.36 Elapsed: 00:00:00.35
# Mc/sec: 708.97
//
Query:       MMETSP1137-20121227|3359_1  [L=481]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     2e-122  406.8  25.8   2.3e-122  406.7  17.9    1.0  1  TIGR00836 amt: ammonium transporter
      6e-80  266.8  20.0    8.7e-79  263.0  13.9    1.9  1  TIGR03644 marine_trans_1: probable ammonium transporter, marine subtype


Domain annotation for each model (and alignments):
>> TIGR00836  amt: ammonium transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  406.7  17.9  1.1e-125  2.3e-122       1     406 []      19     459 ..      19     459 .. 0.93

  Alignments for each domain:
  == domain 1    score: 406.7 bits;  conditional E-value: 1.1e-125
   TIGR00836   1 dtawllvaaalVflmqpGlalLeaGlvrsknvlnillknlldlavvillyvllGyslafg..eeaetvngfiGts..kfglkn..kvlk.....esskeelpelvfflfqlvFaaiaaaivsgavaeRikfsayllfsvllltlvyppvahwvwgtgGwlal.........klgvlDFAGstvVHlvgGvagLvaalvlGpRigrf.....eseaikphnvplvvlGtflLwfGWfgFNaGSal..aang.laalaavnTtlaaaagaltallieylk......egkptvlgaingilaglvaitagagvvepwaalviGvvagvlvllavsklkkklkiDDpldvfavHgvaGiwGlilvglfaaekvvasagtagss....llggnakqllvqligilvilvysfvvtliillilkkvigLRvseeeEklGlDlaehgesay 406
                 dt+++++aa+lVf mq+G+alL aG+vr+knv ni+lk +ld++++ ++++l+Gy++a++  +++   n fiGt   ++ l++  +  +     e +  +  + v+++fq++Faa+aa+ivsgavaeR+++sayl++ + +++++yp+v hwvw+  G+l++          +g++DFAGs+vVH++gG+a++v+a +lGpR+grf      +  +++h+++l+vlGtf+Lw+GW+gFN GS+l    ng +aa++ v+Ttla+ ++a + l i+++       +  +++ +++n +laglv++tag+++vep+ a+viG+ + ++ + + s l++kl+iDDpld+favHgv+G+wG+i+vglf +e++ + + ++g++    ++gg +++l+ ql+g+++ + +++ + l+++l l+++++ Rv  e E++GlD+++hg say
  MMETSP1137-20121227|3359_1  19 DTFYIFWAATLVFSMQMGFALLSAGAVRRKNVQNIMLKGVLDACLGAVIWYLWGYGVAYDaeRDQPDANPFIGTGctNYALAGhvT--HsncnsEGQGAYGYDWVSWFFQYAFAAAAATIVSGAVAERCNLSAYLIYTTGITGFIYPVVVHWVWDSAGFLSAnnsninerwGTGMIDFAGSGVVHMTGGMAAIVGAKILGPRRGRFapdgtAQPGFTGHSLALTVLGTFVLWIGWYGFNQGSTLklIGNGkTAARVGVTTTLAGGMAACVGLYIKRMLppalggTHVWDLGHTCNSLLAGLVGVTAGCATVEPYLAVVIGICS-AFFYHGGSCLMRKLRIDDPLDAFAVHGVNGLWGVIAVGLFTKEEYSYVVDDDGNTaygcFTGGDGALLGTQLAGACIEIXWVVSLSLVLFLGLHFTGMFRVPVEMEEAGLDVSKHGGSAY 459
                 89**********************************************************77566789******998889999542..3346455556677899***************************************************999999888999998899***********************************9988899*****************************7755557***********************9986333322458***********************************9.88999999**************************************999888877999999*********************************************************99 PP

>> TIGR03644  marine_trans_1: probable ammonium transporter, marine subtype
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  263.0  13.9   4.2e-82   8.7e-79       3     403 ..      18     461 ..      16     462 .. 0.85

  Alignments for each domain:
  == domain 1    score: 263.0 bits;  conditional E-value: 4.2e-82
   TIGR03644   3 ldtflflvsgalvmwmaaGfamleaGlvrskntteiltknvalfaiaaimyllvgynlmypgdall..legil..eafllaalesvadleagseedaayss.asdfffqvvfvatamsivsGavaerlklwaflvfavvltaliyPvegswkwgg.Gll........se..lgfsdfaGsgivhlaGaaaalagvlllGarkGkygkdgevka.ipgsnlplatlGtfilwlGwfGfnGgsqlal.sdvedanavak.ifvntnaaaaaGaiaalllakllf..gkadltmvlnGalaGlvaitaePlaPsllaatliGavgGvlvvlsivlldklkiddpvGaisvhgvaGifGllvvpltn......................adasfvaqligvvaifvfvfvaslivwailkavlGirvseeeeleGldlaelGleaype 403
                 +dtf+++ ++ lv+ m  Gfa+l aG vr kn+ +i+ k v   ++ a++++l gy ++y ++  +   + ++    +  a + +v++ + +se++ ay      +ffq  f+a+a++ivsGavaer  l a+l+++  +t++iyPv  +w w + G+l        ++  +g+ dfaGsg+vh++G++aa+ g+ +lG+r G++++dg+ ++ ++g +l+l+ lGtf+lw+Gw+Gfn gs l+l ++ + a+ v+    +   +aa+ G+    +l   l   +  dl  + n  laGlv +ta   + +++ a++iG+ +      +  l+ kl+iddp+ a +vhgv G++G+++v l +                      ++a + +ql+g+++ + +v+  sl+++  l+++   rv  e e  Gld+++ G +aype
  MMETSP1137-20121227|3359_1  18 VDTFYIFWAATLVFSMQMGFALLSAGAVRRKNVQNIMLKGVLDACLGAVIWYLWGYGVAYDAERDQpdANPFIgtGCTNYALAGHVTHSNCNSEGQGAYGYdWVSWFFQYAFAAAAATIVSGAVAERCNLSAYLIYTTGITGFIYPVVVHWVWDSaGFLsannsninERwgTGMIDFAGSGVVHMTGGMAAIVGAKILGPRRGRFAPDGTAQPgFTGHSLALTVLGTFVLWIGWYGFNQGSTLKLiGNGKTAARVGVtTTLAGGMAACVGLYIKRMLPPALGgtHVWDLGHTCNSLLAGLVGVTAGCATVEPYLAVVIGICSAFFYHGGSCLMRKLRIDDPLDAFAVHGVNGLWGVIAVGLFTkeeysyvvdddgntaygcftggDGALLGTQLAGACIEIXWVVSLSLVLFLGLHFTGMFRVPVEMEEAGLDVSKHGGSAYPE 461
                 79**********************************************************765433114445543222223334445555666677777664678************************************************9779996655433322335899***********************************997699***************************96245555555543133455677777765555555555411446************************************************************************87666899999999999999999998889999***************************99***********************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (481 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       131  (0.0319356); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.14s 00:00:00.52 Elapsed: 00:00:00.46
# Mc/sec: 1380.15
//
Query:       MMETSP1137-20121227|3360_1  [L=750]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.1e-20   70.0   1.6    6.7e-20   69.3   1.1    1.2  1  TIGR02858 spore_III_AA: stage III sporulation protein AA
    0.00018   17.9   0.0    0.00029   17.3   0.0    1.2  1  TIGR00602 rad24: checkpoint protein rad24
     0.0035   14.9   0.1     0.0072   13.9   0.1    1.4  1  TIGR03771 anch_rpt_ABC: anchored repeat-type ABC transporter, ATP-binding subunit
     0.0044   14.0   0.0     0.0085   13.1   0.0    1.4  1  TIGR01186 proV: glycine betaine/L-proline transport ATP binding subunit
     0.0046   13.4   0.0     0.0071   12.8   0.0    1.2  1  TIGR00368 TIGR00368: Mg chelatase-like protein
     0.0047   14.0   0.3      0.029   11.4   0.0    2.1  2  TIGR03005 ectoine_ehuA: ectoine/hydroxyectoine ABC transporter, ATP-binding protein EhuA
     0.0049   14.4   0.0     0.0086   13.6   0.0    1.4  1  TIGR01351 adk: adenylate kinases
     0.0058   14.3   0.0       0.01   13.5   0.0    1.3  1  TIGR00150 HI0065_YjeE: ATPase, YjeE family
     0.0058   13.0   0.0     0.0091   12.4   0.0    1.2  1  TIGR03922 T7SS_EccA: type VII secretion AAA-ATPase EccA
     0.0078   13.5   0.1      0.015   12.6   0.1    1.3  1  TIGR02315 ABC_phnC: phosphonate ABC transporter, ATP-binding protein
  ------ inclusion threshold ------
      0.016   12.0   0.0      0.029   11.2   0.0    1.3  1  TIGR02788 VirB11: P-type DNA transfer ATPase VirB11
      0.027   11.2   0.2      0.042   10.6   0.1    1.2  1  TIGR02857 CydD: thiol reductant ABC exporter, CydD subunit
       0.04   11.1   0.0      0.072   10.2   0.0    1.3  1  TIGR00972 3a0107s01c2: phosphate ABC transporter, ATP-binding protein
      0.043   11.7   0.0       0.09   10.6   0.0    1.4  1  TIGR02173 cyt_kin_arch: putative cytidylate kinase
      0.052   10.2   0.0       0.11    9.2   0.0    1.4  1  TIGR02928 TIGR02928: orc1/cdc6 family replication initiation protein
      0.061    9.0   0.1      0.084    8.6   0.0    1.1  1  TIGR03348 VI_IcmF: type VI secretion protein IcmF


Domain annotation for each model (and alignments):
>> TIGR02858  spore_III_AA: stage III sporulation protein AA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.3   1.1   2.6e-22   6.7e-20      85     240 ..     510     656 ..     508     680 .. 0.84

  Alignments for each domain:
  == domain 1    score: 69.3 bits;  conditional E-value: 2.6e-22
   TIGR02858  85 vaslniriarevlgaaeklleylvknnrvlntliisPPqsGkttllrdlaralstGisklglkglkvgivderseiaacvkGvPqldvG..lrtdvldaCpkaeGlmllirslsPdvivvdeiGreedveallealnaGvsviatahgkdledlkkrp 240
                 + ++ iri r v gaa+ + + l+  ++ +++l+++PP sGktt++r+++r l          + +v+++d   ei ++    P   +G   r+ v  +  +a  ++  ++  +P+v+v deiGre+++ea   a + Gv via+ahg+  + +++r 
  MMETSP1137-20121227|3360_1 510 IGGVTIRIGRSVEGAADMMADVLF--GSDKSVLLLGPPGSGKTTIIREMSRLLGI--------AHNVVVIDSSNEIGGAG-VTPHSCIGlaRRMMVPIHATQASVMLECVQNHTPHVMVLDEIGREKEAEAAEGAKRRGVRVIASAHGTLRDLINNRA 656
                 67889************9999999..777899*******************9954........5689*********9862.235555551168888889999999999****************************************8666666664 PP

>> TIGR00602  rad24: checkpoint protein rad24
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.0   1.1e-06   0.00029     100     137 ..     527     563 ..     520     574 .. 0.88

  Alignments for each domain:
  == domain 1    score: 17.3 bits;  conditional E-value: 1.1e-06
   TIGR00602 100 lkaqvLeskkkriLLitGPsGCgKsTvikiLsKelgik 137
                 + a+vL    k +LL+ GP+G gK+T+i+++s+ lgi 
  MMETSP1137-20121227|3360_1 527 MMADVLFGSDKSVLLL-GPPGSGKTTIIREMSRLLGIA 563
                 7899999988998887.******************986 PP

>> TIGR03771  anch_rpt_ABC: anchored repeat-type ABC transporter, ATP-binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.1   2.8e-05    0.0072       9      43 ..     539     573 ..     534     583 .. 0.85

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 2.8e-05
   TIGR03771   9 lgllGpnGaGkttllrailglikvakGsvkvagks 43 
                 + llGp G+Gktt++r +  l+  a+  v +++ +
  MMETSP1137-20121227|3360_1 539 VLLLGPPGSGKTTIIREMSRLLGIAHNVVVIDSSN 573
                 669*******************9999999998854 PP

>> TIGR01186  proV: glycine betaine/L-proline transport ATP binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.1   0.0   3.3e-05    0.0085      22     110 ..     539     630 ..     523     640 .. 0.70

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 3.3e-05
   TIGR01186  22 iviiGlsGsGkstlvrllnrliePtaGkilidGed.i..aeisdaelrevrrkkiamviqkialfPhmtildnislglellkideqerkeka 110
                 + ++G+ GsGk+t++r + rl+  +   + id  + i  a + +     + r+ +  +    a +    +++ + +++ l +i +++  e a
  MMETSP1137-20121227|3360_1 539 VLLLGPPGSGKTTIIREMSRLLGIAHNVVVIDSSNeIggAGVTPHSCIGLARRMMVPIHATQASVMLECVQNHTPHVMVLDEIGREKEAEAA 630
                 6789****************************876232223344444444555544444444444456677777777777777776666655 PP

>> TIGR00368  TIGR00368: Mg chelatase-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.8   0.0   2.8e-05    0.0071     212     247 ..     537     572 ..     527     612 .. 0.84

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 2.8e-05
   TIGR00368 212 hnllllGPPGsGktllakrlqgllPeltneealeta 247
                   +lllGPPGsGkt +++ ++ ll   +n  +++++
  MMETSP1137-20121227|3360_1 537 KSVLLLGPPGSGKTTIIREMSRLLGIAHNVVVIDSS 572
                 679****************99999877777777665 PP

>> TIGR03005  ectoine_ehuA: ectoine/hydroxyectoine ABC transporter, ATP-binding protein EhuA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.0      0.38        97     120     141 ..     100     121 ..      91     127 .. 0.82
   2 !   11.4   0.0   0.00011     0.029      26      63 ..     536     573 ..     523     632 .. 0.78

  Alignments for each domain:
  == domain 1    score: -0.1 bits;  conditional E-value: 0.38
   TIGR03005 120 raeaekravelldmvGladkad 141
                   +a+++ +  l m+G+a++ +
  MMETSP1137-20121227|3360_1 100 YLQAKEKEISTLSMIGMAAQEQ 121
                 46899999*********99865 PP

  == domain 2    score: 11.4 bits;  conditional E-value: 0.00011
   TIGR03005  26 GekvaliGpsGsGkstilrilmtletideGsikvegeq 63 
                  + v l+Gp GsGk+ti+r +  l +i +  + +++ +
  MMETSP1137-20121227|3360_1 536 DKSVLLLGPPGSGKTTIIREMSRLLGIAHNVVVIDSSN 573
                 4568899*****************99999999998765 PP

>> TIGR01351  adk: adenylate kinases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   0.0   3.3e-05    0.0086       2      27 ..     539     564 ..     538     567 .. 0.92

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 3.3e-05
   TIGR01351   2 lvllGpPGsGKGTqakrlaeklglvh 27 
                 ++llGpPGsGK T+ ++++  lg++h
  MMETSP1137-20121227|3360_1 539 VLLLGPPGSGKTTIIREMSRLLGIAH 564
                 79*****************9999987 PP

>> TIGR00150  HI0065_YjeE: ATPase, YjeE family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   0.0   4.1e-05      0.01      23      52 ..     537     566 ..     521     569 .. 0.84

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 4.1e-05
   TIGR00150  23 tvvlLkGdlGaGKttlvkgllkglGiqgev 52 
                 + vlL G  G+GKtt+++ + + lGi  +v
  MMETSP1137-20121227|3360_1 537 KSVLLLGPPGSGKTTIIREMSRLLGIAHNV 566
                 567889********************9987 PP

>> TIGR03922  T7SS_EccA: type VII secretion AAA-ATPase EccA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.4   0.0   3.5e-05    0.0091     313     336 ..     537     560 ..     530     571 .. 0.86

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 3.5e-05
   TIGR03922 313 kHlllaGPPGtGkttiArvvakiy 336
                 k +ll+GPPG Gktti r +++++
  MMETSP1137-20121227|3360_1 537 KSVLLLGPPGSGKTTIIREMSRLL 560
                 6689*************9988765 PP

>> TIGR02315  ABC_phnC: phosphonate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.6   0.1   5.7e-05     0.015      31      63 ..     539     571 ..     525     581 .. 0.85

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 5.7e-05
   TIGR02315  31 vaviGlsGaGkstllrsinrlveissgsilleg 63 
                 v ++G+ G+Gk+t++r ++rl  i +  ++++ 
  MMETSP1137-20121227|3360_1 539 VLLLGPPGSGKTTIIREMSRLLGIAHNVVVIDS 571
                 6799******************99988777664 PP

>> TIGR02788  VirB11: P-type DNA transfer ATPase VirB11
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   0.00011     0.029     143     183 ..     535     575 ..     526     608 .. 0.94

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 0.00011
   TIGR02788 143 akkniiisGgtgsgKTTflkalvkliPkeeRlitiedteEl 183
                 + k++++ G +gsgKTT+++ + +l+  ++ ++ i+ ++E+
  MMETSP1137-20121227|3360_1 535 SDKSVLLLGPPGSGKTTIIREMSRLLGIAHNVVVIDSSNEI 575
                 5799*******************************999997 PP

>> TIGR02857  CydD: thiol reductant ABC exporter, CydD subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.1   0.00017     0.042     345     384 ..     533     572 ..     512     583 .. 0.84

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 0.00017
   TIGR02857 345 vepgelvalvGaSGaGKstllklllgfvepteGailvnga 384
                 + + + v l+G+ G+GK+t+++ +++++  ++  ++++++
  MMETSP1137-20121227|3360_1 533 FGSDKSVLLLGPPGSGKTTIIREMSRLLGIAHNVVVIDSS 572
                 4567899*********************999999999765 PP

>> TIGR00972  3a0107s01c2: phosphate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   0.00028     0.072      27      55 ..     536     564 ..     525     573 .. 0.82

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 0.00028
   TIGR00972  27 nkvtaliGpsGcGkstllrslnrlndlve 55 
                 +k + l+Gp G+Gk+t++r + rl    +
  MMETSP1137-20121227|3360_1 536 DKSVLLLGPPGSGKTTIIREMSRLLGIAH 564
                 556779*****************976665 PP

>> TIGR02173  cyt_kin_arch: putative cytidylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   0.00035      0.09       4      28 ..     540     564 ..     538     568 .. 0.87

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 0.00035
   TIGR02173   4 visGpPGsGkttvakilaeklslkl 28 
                  + GpPGsGktt+ +++++ l++ +
  MMETSP1137-20121227|3360_1 540 LLLGPPGSGKTTIIREMSRLLGIAH 564
                 567***************9998765 PP

>> TIGR02928  TIGR02928: orc1/cdc6 family replication initiation protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   0.0   0.00041      0.11      29      64 ..     526     560 ..     519     570 .. 0.80

  Alignments for each domain:
  == domain 1    score: 9.2 bits;  conditional E-value: 0.00041
   TIGR02928  29 kalkpilrgsrpsnvliyGktGtGKtavtkkvlkel 64 
                  ++ ++l gs  ++vl+ G++G+GKt++++ + + l
  MMETSP1137-20121227|3360_1 526 DMMADVLFGSD-KSVLLLGPPGSGKTTIIREMSRLL 560
                 56677777765.78***************9987765 PP

>> TIGR03348  VI_IcmF: type VI secretion protein IcmF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   0.0   0.00033     0.084     115     130 ..     540     555 ..     539     566 .. 0.91

  Alignments for each domain:
  == domain 1    score: 8.6 bits;  conditional E-value: 0.00033
   TIGR03348 115 lviGppGsGKTtllkn 130
                 l++GppGsGKTt++++
  MMETSP1137-20121227|3360_1 540 LLLGPPGSGKTTIIRE 555
                 79************87 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (750 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       250  (0.0609459); expected 82.0 (0.02)
Passed bias filter:                      223  (0.0543637); expected 82.0 (0.02)
Passed Vit filter:                        98  (0.0238908); expected 4.1 (0.001)
Passed Fwd filter:                        16  (0.00390054); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              16  [number of targets reported over threshold]
# CPU time: 0.80u 0.22s 00:00:01.02 Elapsed: 00:00:00.96
# Mc/sec: 1031.16
//
Query:       MMETSP1137-20121227|3361_1  [L=317]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (317 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       187  (0.0455875); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.16s 00:00:00.43 Elapsed: 00:00:00.37
# Mc/sec: 1130.83
//
Query:       MMETSP1137-20121227|3362_1  [L=92]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (92 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        49  (0.0119454); expected 82.0 (0.02)
Passed bias filter:                       41  (0.00999512); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.16s 00:00:00.31 Elapsed: 00:00:00.47
# Mc/sec: 258.36
//
Query:       MMETSP1137-20121227|3363_1  [L=310]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.8e-35  120.6   4.4    1.6e-21   74.6   0.3    2.1  2  TIGR03970 Rv0697: dehydrogenase, Rv0697 family
    1.8e-34  117.1   0.2    2.7e-20   70.3   0.0    2.3  2  TIGR01810 betA: choline dehydrogenase
     0.0038   14.0   0.4      0.018   11.7   0.1    1.8  2  TIGR02462 pyranose_ox: pyranose oxidase


Domain annotation for each model (and alignments):
>> TIGR03970  Rv0697: dehydrogenase, Rv0697 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.7   0.2   1.7e-16   2.3e-13     246     300 ..       8      63 ..       2      70 .. 0.92
   2 !   74.6   0.3   1.2e-24   1.6e-21     353     486 ..     162     298 ..     147     299 .. 0.93

  Alignments for each domain:
  == domain 1    score: 47.7 bits;  conditional E-value: 1.7e-16
   TIGR03970 246 rvvlcaGavesaalLllsGvGpaeqLraaGvavvldlP.vGsdtvDhPevvlpvrl 300
                  vvlcaG++ s++lL+lsG+Gp e+L ++ v+vv+++P vG+++v+h  v ++vr+
  MMETSP1137-20121227|3363_1   8 EVVLCAGTMRSPQLLMLSGIGPREVLDQHKVPVVIEAPaVGQNMVNHLHVPIKVRY 63 
                 69*********************************************998887765 PP

  == domain 2    score: 74.6 bits;  conditional E-value: 1.2e-24
   TIGR03970 353 ksrGeirlasadpaaapviehryds...saaDrealregaalaeeLleaveastllepavkeseaswvrarlatsqhlsGsarmgaeddpaavvDarCrvrGvegLavvDtsilPaitsrGPhativmvaeraaefl 486
                  +rG+++l+sa+ +++pv++ +y +    + D++ + eg +  +++++a ++  +++pa     a +vr   +t  h  G++rmg   d+++vvD + rv G++ L v+D+s++P i+     a ++mv+   a+++
  MMETSP1137-20121227|3363_1 162 ATRGNVTLRSANARDDPVLHANYLKgvdGTYDVSVIMEGLERFQDVISASPHLEIIQPAPDADLAYYVRRFAGTYNHHVGTCRMGDASDAQSVVDRQLRVVGAHALRVADASVIPEIPNANTAAIAMMVGFHGADII 298
                 479********************86222578**************************************************************************************************98888876 PP

>> TIGR01810  betA: choline dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.7   0.0   1.1e-15   1.5e-12     243     297 ..       5      59 ..       1      76 [. 0.92
   2 !   70.3   0.0     2e-23   2.7e-20     385     529 ..     162     301 ..     155     304 .. 0.85

  Alignments for each domain:
  == domain 1    score: 44.7 bits;  conditional E-value: 1.1e-15
   TIGR01810 243 ankevilsagainspkllqlsGiGdaehlkelgielkvelpGvGenlqdhlelyl 297
                 a  ev+l+ag++ sp+ll+lsGiG+ e l +  +++++e p vG+n+ +hl + +
  MMETSP1137-20121227|3363_1   5 ALVEVVLCAGTMRSPQLLMLSGIGPREVLDQHKVPVVIEAPAVGQNMVNHLHVPI 59 
                 5679***********************************************9855 PP

  == domain 2    score: 70.3 bits;  conditional E-value: 2e-23
   TIGR01810 385 ksrGhvkikskdpkekpailfnylsheedkeefreairvtreilkqkaldlyrGreispGeevqtdeeidefvredaetalhpcgtckmGakddemsvvdpetrvhGleglrvvdasilprittGnlnapsimigekaadiirGk 529
                  +rG+v ++s + +++p++  nyl   +   + + +i    e ++       + + i+p +    d ++  +vr+ a t  h  gtc+mG ++d  svvd + rv G ++lrv+das++p+i + n  a ++m+g + adii+  
  MMETSP1137-20121227|3363_1 162 ATRGNVTLRSANARDDPVLHANYLKGVDGTYD-VSVIMEGLERFQDVISASPHLEIIQPAP----DADLAYYVRRFAGTYNHHVGTCRMGDASDAQSVVDRQLRVVGAHALRVADASVIPEIPNANTAAIAMMVGFHGADIIMAT 301
                 57**********************87765544.4455555555554444444455567765....789*************************************************************************9865 PP

>> TIGR02462  pyranose_ox: pyranose oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.0   0.0     0.047        64     274     298 ..       9      33 ..       3      55 .. 0.72
   2 !   11.7   0.1   1.4e-05     0.018     480     545 ..     234     300 ..     231     302 .. 0.90

  Alignments for each domain:
  == domain 1    score: 0.0 bits;  conditional E-value: 0.047
   TIGR02462 274 fvlaaGavataqilvnsgisslger 298
                  vl+aG++ ++q+l+ sgi+     
  MMETSP1137-20121227|3363_1   9 VVLCAGTMRSPQLLMLSGIGPREVL 33 
                 58999*************9844433 PP

  == domain 2    score: 11.7 bits;  conditional E-value: 1.4e-05
   TIGR02462 480 GlalhlaGttriGld.eqktvadtdskvfnfknlyvgGnGvietafaanPtltsvayaiksaeaiin 545
                 G   h  Gt r+G   ++++v+d + +v + + l v+ + vi++   an +  ++    ++a+ i++
  MMETSP1137-20121227|3363_1 234 GTYNHHVGTCRMGDAsDAQSVVDRQLRVVGAHALRVADASVIPEIPNANTAAIAMMVGFHGADIIMA 300
                 5567999******651669**************************************9999998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (310 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       101  (0.0246221); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.28u 0.17s 00:00:00.45 Elapsed: 00:00:00.47
# Mc/sec: 870.57
//
Query:       MMETSP1137-20121227|3364_1  [L=395]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (395 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        65  (0.0158459); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.14s 00:00:00.42 Elapsed: 00:00:00.35
# Mc/sec: 1489.59
//
Query:       MMETSP1137-20121227|3365_1  [L=319]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (319 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       100  (0.0243784); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.17s 00:00:00.43 Elapsed: 00:00:00.41
# Mc/sec: 1026.94
//
Query:       MMETSP1137-20121227|3366_1  [L=333]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (333 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        82  (0.0199902); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.19s 00:00:00.43 Elapsed: 00:00:00.33
# Mc/sec: 1331.89
//
Query:       MMETSP1137-20121227|3367_1  [L=84]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (84 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        46  (0.011214); expected 82.0 (0.02)
Passed bias filter:                       42  (0.0102389); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:00.26
# Mc/sec: 426.43
//
Query:       MMETSP1137-20121227|3368_1  [L=542]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (542 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        81  (0.0197465); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.16s 00:00:00.53 Elapsed: 00:00:00.62
# Mc/sec: 1153.84
//
Query:       MMETSP1137-20121227|3370_1  [L=183]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-16   58.5   2.3    1.6e-16   58.2   1.6    1.0  1  TIGR01622 SF-CC1: splicing factor, CC1-like family
    1.2e-09   35.7   2.0    1.4e-09   35.5   1.4    1.1  1  TIGR01628 PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family
    5.9e-07   27.2   0.0      7e-07   27.0   0.0    1.1  1  TIGR01661 ELAV_HUD_SF: ELAV/HuD family splicing factor
    6.1e-05   20.6   0.0      8e-05   20.2   0.0    1.2  1  TIGR01659 sex-lethal: sex-lethal family splicing factor
    0.00015   18.7   0.0    0.00016   18.6   0.0    1.1  1  TIGR01649 hnRNP-L_PTB: hnRNP-L/PTB/hephaestus splicing factor family
    0.00036   17.3   0.0    0.00045   17.0   0.0    1.1  1  TIGR01648 hnRNP-R-Q: hnRNP-R, Q splicing factor family
    0.00089   15.7   0.0      0.001   15.5   0.0    1.2  1  TIGR01642 U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor
  ------ inclusion threshold ------
        1.6    5.2   7.7      0.091    9.3   0.0    1.8  2  TIGR01645 half-pint: poly-U binding splicing factor, half-pint family
        2.7    4.8  12.4          4    4.3   8.6    1.3  1  TIGR01554 major_cap_HK97: phage major capsid protein, HK97 family
        4.8    2.5  12.8        5.9    2.2   8.9    1.1  1  TIGR00927 2A1904: K+-dependent Na+/Ca+ exchanger


Domain annotation for each model (and alignments):
>> TIGR01622  SF-CC1: splicing factor, CC1-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.2   1.6   3.9e-19   1.6e-16      66     194 ..      21     145 ..       6     162 .. 0.82

  Alignments for each domain:
  == domain 1    score: 58.2 bits;  conditional E-value: 3.9e-19
   TIGR01622  66 srkrreserererekerrredevrrkrkeredrrerrekeerlkeelteeeRDartvfvlqlalklreRdlkEFFskvgkvrdvrlikDrnSrrSkGvaYvEFydvesvqlAlaltGqkllgvPvivqa 194
                   ++ + e+e  ++k r+ ede +   k r+ + +++e+    +e ++ +e D r v+v +++  +++ +l+E F   g v  v ++ D+  +  kG aYvEF +ve+v +A+al+   ++g+ ++v a
  MMETSP1137-20121227|3370_1  21 AEQEVDAELEAMKNKVREMEDEAE---KLRQIQEQVEEQMGDGEEGEAAAETDTRSVYVGNVDYSATPEELQELFAGCGTVNRVTILCDKF-KNPKGYAYVEFAEVEAVDAAVALSETEFKGRQIKVVA 145
                 333444555566666666667777...5556666666664446788999****************************************97.568******************************9965 PP

>> TIGR01628  PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.5   1.4   3.5e-12   1.4e-09     249     344 ..      30     130 ..       3     147 .. 0.68

  Alignments for each domain:
  == domain 1    score: 35.5 bits;  conditional E-value: 3.5e-12
   TIGR01628 249 tgkilyVgraqkraeReaelkakfeelk.....qerkekaqgvNlYvkNlddtvddekLrelFeefGeitSakvmldekekSkgFGFVcfssqeeAnkAvt 344
                 + ++  V  +   ae+ ++++++ ee++      e   ++    +Yv N+d + + e+L+elF  +G++  + +++d+ ++ kg+ +V f++ e+  +Av 
  MMETSP1137-20121227|3370_1  30 EAMKNKVREMEDEAEKLRQIQEQVEEQMgdgeeGEAAAETDTRSVYVGNVDYSATPEELQELFAGCGTVNRVTILCDKFKNPKGYAYVEFAEVEAVDAAVA 130
                 55555566666666666666666555541111145566778889***********************************************9998777773 PP

>> TIGR01661  ELAV_HUD_SF: ELAV/HuD family splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.0   0.0   1.7e-09     7e-07     250     346 ..      51     147 ..       2     152 .. 0.66

  Alignments for each domain:
  == domain 1    score: 27.0 bits;  conditional E-value: 1.7e-09
   TIGR01661 250 dgavaglaagaqi.aasdgagycifvynls.pdtdeavlqlfgpfGavqsvkiirdlttnkckGygfvsmtnydeaalailslnGytlgnrvlqvsfkt 346
                 + +   +  g++  aa+++    ++v n+  + t e +  lf+  G+v+ v i+ d   ++ kGy++v  ++  ea+ a  +l  +++ +r ++v++k 
  MMETSP1137-20121227|3370_1  51 EQVEEQMGDGEEGeAAAETDTRSVYVGNVDySATPEELQELFAGCGTVNRVTILCDK-FKNPKGYAYVEFAEV-EAVDAAVALSETEFKGRQIKVVAKR 147
                 333334444443313456677899****973667788889****************9.8889********985.8999999*************99985 PP

>> TIGR01659  sex-lethal: sex-lethal family splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   0.0     2e-07     8e-05     195     256 ..      73     132 ..      59     174 .. 0.83

  Alignments for each domain:
  == domain 1    score: 20.2 bits;  conditional E-value: 2e-07
   TIGR01659 195 nlyvtnlprtitddqldtifgkygsivqknilrdkltgkprgvafvrfnkreeaqeaisaln 256
                  +yv n+  + t ++l+ +f   g++ +  il dk+  +p+g a+v f   e   +a  al 
  MMETSP1137-20121227|3370_1  73 SVYVGNVDYSATPEELQELFAGCGTVNRVTILCDKFK-NPKGYAYVEFAEVEAV-DAAVALS 132
                 58*********************************96.7*********987654.5555555 PP

>> TIGR01649  hnRNP-L_PTB: hnRNP-L/PTB/hephaestus splicing factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.0     4e-07   0.00016     287     376 ..      60     150 ..       6     162 .. 0.75

  Alignments for each domain:
  == domain 1    score: 18.6 bits;  conditional E-value: 4e-07
   TIGR01649 287 isstapaasglgsVllvsnLeeekvtpdalFnlfgvYGdvervkil....knkketalvemadpqqaqlalthLdkvklfgkklrvavSkqeav 376
                  ++ + aa++ +  + v n++ +  tp++l  lf+  G v+rv il    kn k+ a ve+a+ ++++ a+  L ++++ g++++v++ k+++v
  MMETSP1137-20121227|3370_1  60 GEEGEAAAETDTRSVYVGNVDYS-ATPEELQELFAGCGTVNRVTILcdkfKNPKGYAYVEFAEVEAVDAAVA-LSETEFKGRQIKVVA-KRTNV 150
                 44445556666677778888765.69*******************93333455889************9996.99999*******965.66666 PP

>> TIGR01648  hnRNP-R-Q: hnRNP-R, Q splicing factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.0   1.1e-06   0.00045     234     307 ..      72     149 ..      55     181 .. 0.70

  Alignments for each domain:
  == domain 1    score: 17.0 bits;  conditional E-value: 1.1e-06
   TIGR01648 234 kilyvrnlmletteeiieksfsefkpGaverv.......kkirdyafvhfedredavkamdelnGkeleGseievtlakPv 307
                 + +yv n+  ++t e ++  f+    G+v+rv       k  + ya+v f + e av+a  +l  +e++G +i v+  +  
  MMETSP1137-20121227|3370_1  72 RSVYVGNVDYSATPEELQELFAGC--GTVNRVtilcdkfKNPKGYAYVEFAEVE-AVDAAVALSETEFKGRQIKVVAKRTN 149
                 567999999999999999999998..9999983333222334569*****9875.8999999999******9999865433 PP

>> TIGR01642  U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   2.5e-06     0.001     171     256 ..      66     144 ..      19     163 .. 0.75

  Alignments for each domain:
  == domain 1    score: 15.5 bits;  conditional E-value: 2.5e-06
   TIGR01642 171 qatrkaRrlyvgniPpeakeeavvdFfndlllavgkdkaedgkavkaviinkdkkFaflEfrtveeatlalaldsiiyenvslkir 256
                  a+   R +yvgn+   a+ e++ + f       + ++     ++++ ++ + k +a++Ef+ ve    a+al    +++  +k+ 
  MMETSP1137-20121227|3370_1  66 AAETDTRSVYVGNVDYSATPEELQELFAG---CGTVNR----VTILCDKFKNPKGYAYVEFAEVEAVDAAVALSETEFKGRQIKVV 144
                 45666788888888888888887766643...223333....35888888888888888888888888888888888888888775 PP

>> TIGR01645  half-pint: poly-U binding splicing factor, half-pint family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   3.4       1.2   5.1e+02     444     489 ..       6      53 ..       1      76 [. 0.44
   2 ?    9.3   0.0   0.00022     0.091     208     302 ..      79     172 ..      63     178 .. 0.66

  Alignments for each domain:
  == domain 1    score: -3.1 bits;  conditional E-value: 1.2
   TIGR01645 444 aakakeaaaalllenkkkkkekeeeelqpkl..veeeedeslaeqenl 489
                 +a+a++ a a   e+  ++   e e +++k+  +e+e ++  + qe++
  MMETSP1137-20121227|3370_1   6 EAEAAALAEAEYEEEAEQEVDAELEAMKNKVreMEDEAEKLRQIQEQV 53 
                 223333333333333333333344444444422222222222334443 PP

  == domain 2    score: 9.3 bits;  conditional E-value: 0.00022
   TIGR01645 208 vhpdlseedlksvfeafGeivkcklaraptlrkhkGfGflefenlqsqseaiasmnlfdlGGqllrvGkavtPPdallqPatvsalPaaaavaaa 302
                 v    + e+l+ +f   G + + ++  +   ++ kG+ ++ef++ ++ + a+a  +    G q+  v k    P+  +   t ++ P +   +aa
  MMETSP1137-20121227|3370_1  79 VDYSATPEELQELFAGCGTVNRVTILCDK-FKNPKGYAYVEFAEVEAVDAAVALSETEFKGRQIKVVAKRTNVPEGEARGLTRATAPCTGRGTAA 172
                 44444456677777777777776666554.56678888888888888888888766666677766677777777777777777777766554444 PP

>> TIGR01554  major_cap_HK97: phage major capsid protein, HK97 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   8.6    0.0097         4      11      73 ..       5      68 ..       1      94 [. 0.44

  Alignments for each domain:
  == domain 1    score: 4.3 bits;  conditional E-value: 0.0097
   TIGR01554 11 lakelkkltedekeeeaeeekke.kdalkaeidkleaeierleeaaaeeeakeaasgeagkeee 73
                 ++e+ +l+e+e eeeae+e ++  +a+k++++++e+e e+l++ +++ e++  +  e+++++e
  MMETSP1137-20121227|3370_1  5 AEAEAAALAEAEYEEEAEQEVDAeLEAMKNKVREMEDEAEKLRQIQEQVEEQMGDGEEGEAAAE 68
                3344444444444444333332202224444444444444444443322222222222222222 PP

>> TIGR00927  2A1904: K+-dependent Na+/Ca+ exchanger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   8.9     0.014       5.9     768     834 ..       5      71 ..       1     101 [. 0.48

  Alignments for each domain:
  == domain 1    score: 2.2 bits;  conditional E-value: 0.014
   TIGR00927 768 aegekdeesggeaeqegeseekaeeeseGeieaerkgedegegeieakeaevkGeeeeeeveaeeet 834
                 ae+e    ++ e e+e e+e  ae e   +   e ++e e+  +i+++  e+ G+ ee+e  ae +t
  MMETSP1137-20121227|3370_1   5 AEAEAAALAEAEYEEEAEQEVDAELEAMKNKVREMEDEAEKLRQIQEQVEEQMGDGEEGEAAAETDT 71 
                 3333333333333333333333333333333333334444444444444444444444444444333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (183 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       478  (0.116529); expected 82.0 (0.02)
Passed bias filter:                      305  (0.074354); expected 82.0 (0.02)
Passed Vit filter:                        50  (0.0121892); expected 4.1 (0.001)
Passed Fwd filter:                        10  (0.00243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.34u 0.19s 00:00:00.53 Elapsed: 00:00:00.47
# Mc/sec: 513.92
//
Query:       MMETSP1137-20121227|3371_1  [L=330]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.5e-34  116.8   0.0    3.6e-34  116.2   0.0    1.1  1  TIGR01327 PGDH: phosphoglycerate dehydrogenase


Domain annotation for each model (and alignments):
>> TIGR01327  PGDH: phosphoglycerate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  116.2   0.0   8.8e-38   3.6e-34      92     283 ..     103     297 ..      95     303 .. 0.90

  Alignments for each domain:
  == domain 1    score: 116.2 bits;  conditional E-value: 8.8e-38
   TIGR01327  92 PegntisaaElalalllalaRkipqadksvkekkWerkkflGtElygktlGviGlGriGsevakrakalgmkvlay..DPyiseekaeklgvel..lkdldellaeaDvitvHvPltketkgligkeelakmKkgviivNcaRGGiidEkALvealeegkvraaalDvfekEPpt.dnklleldnvvvtpHlgAste 283
                   + + s aE+a++ +l   ++ip+ +++ k+++W++  f+   ++gktlG++G G iG+  a   +a+gm++++   +P   ee+ +    ++   +d + + + aD++   +P t etk++++k +++ m ++ + +   RG ++dEkAL  al ++ +++aalDvfekEP   d++l + +++ +t+H +  te
  MMETSP1137-20121227|3371_1 103 RGAFSSSLAEFAMTAMLHFNKQIPRCQQNRKTRTWDK--FVMNTVRGKTLGLLGYGSIGKATAALGAAFGMNIIVLrrNPGKVEERGSPQPQKTygFADAEAFYKAADFVVCSLPATAETKHFVSKAAFDAMGPQTVFISLGRGAVVDEKALHAALRSNAISGAALDVFEKEPLPhDSPLWDDEKLLLTAHNADLTE 297
                 55667899****************************9..*********************************987644798888887654443212568899***********************************************************************7769**************876665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (330 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       122  (0.0297416); expected 82.0 (0.02)
Passed bias filter:                      119  (0.0290102); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.27u 0.11s 00:00:00.38 Elapsed: 00:00:00.37
# Mc/sec: 1177.20
//
Query:       MMETSP1137-20121227|3372_1  [L=68]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (68 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        48  (0.0117016); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.15s 00:00:00.29 Elapsed: 00:00:00.28
# Mc/sec: 320.54
//
Query:       MMETSP1137-20121227|3374_1  [L=245]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.2e-49  164.5   0.0    1.1e-48  163.7   0.0    1.4  1  TIGR03181 PDH_E1_alph_x: pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit
    3.3e-27   93.1   0.0    9.6e-27   91.5   0.0    1.6  2  TIGR03182 PDH_E1_alph_y: pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit


Domain annotation for each model (and alignments):
>> TIGR03181  PDH_E1_alph_x: pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  163.7   0.0   5.5e-52   1.1e-48     169     340 ..      46     225 ..      39     226 .. 0.92

  Alignments for each domain:
  == domain 1    score: 163.7 bits;  conditional E-value: 5.5e-52
   TIGR03181 169 avfkapvvfvvqNNqwAISvprskqtaaktlaqkavaagipgvqvDGnDvlAvyevvkealekArkgegPtLiEavtYRlgaHttaDdptrYrske.......eee.ewkkkdPiarlrkyLeekglldeekeeeleeeaeeevkeaveeveelpkpkvedlfdnvYaelpkeleeqkee 340
                 +  +++++f+++NN++AIS+ ++ q  ++ +a +++a+g+p ++vDGnD+lAvy+++k+a++   +++ P ++Ea+tYR+gaH+t+Dd ++Yr+++        e+  w+++ Pi+r+ +yL++kg+++ +keeel+++a++e+ ++++++e++ kp+ e+lf++v++elp++l++q+e+
  MMETSP1137-20121227|3374_1  46 SGPRLQAIFFCRNNGYAISTKVTDQYVSDGVAPRGLAFGMPVIRVDGNDILAVYAATKQARKLVMAEGRPAFVEAMTYRIGAHSTSDDDSKYRTQQspeagwtSERaYWEARSPIIRFGRYLQAKGWYSVRKEEELRKAARREAIDVLNTAERVGKPDFEELFTDVWDELPWTLQSQREA 225
                 5557899***************************************************************************************983322222233368899*****************************************************************986 PP

>> TIGR03182  PDH_E1_alph_y: pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0     0.057   1.2e+02      89     120 ..      14      45 ..       2      51 .. 0.84
   2 !   91.5   0.0   4.7e-30   9.6e-27     160     314 ..      49     212 ..      43     213 .. 0.92

  Alignments for each domain:
  == domain 1    score: -0.7 bits;  conditional E-value: 0.057
   TIGR03182  89 skGkGGsmHlfdkekkflGGhgivgaqvplat 120
                 ++G+   +H+ +kek+f+  ++ +g q+p a+
  MMETSP1137-20121227|3374_1  14 AQGRQLPLHIGSKEKRFMYVKSTLGTQCPHAA 45 
                 67888889**********99999999999775 PP

  == domain 2    score: 91.5 bits;  conditional E-value: 4.7e-30
   TIGR03182 160 klPvifviennkyamGtaverssaekdlakkgesfgikglevdGmdvlavreaakeavervragkgPvllelktyRfrgHslsDpa.kyRske........eveevkkrdpieklkkaliekgllseeelkeiekevkaeveeavefaeespepdveeLlkdvy 314
                 +l  if++ nn ya+ t v+ +  +  +a +g +fg++ ++vdG d+lav++a+k+a + v a+ +P+++e+ tyR  +Hs sD + kyR+++        e   +++r pi ++ ++l +kg+ s  + +e++k +++e  +  + ae+  +pd eeL++dv+
  MMETSP1137-20121227|3374_1  49 RLQAIFFCRNNGYAISTKVTDQYVSDGVAPRGLAFGMPVIRVDGNDILAVYAATKQARKLVMAEGRPAFVEAMTYRIGAHSTSDDDsKYRTQQspeagwtsERAYWEARSPIIRFGRYLQAKGWYSVRKEEELRKAARREAIDVLNTAERVGKPDFEELFTDVW 212
                 57789******************************************************************************99889***97333333224556789******************************************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (245 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        99  (0.0241346); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.25u 0.15s 00:00:00.40 Elapsed: 00:00:00.32
# Mc/sec: 1010.54
//
Query:       MMETSP1137-20121227|3375_1  [L=527]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (527 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       482  (0.117504); expected 82.0 (0.02)
Passed bias filter:                      106  (0.0258411); expected 82.0 (0.02)
Passed Vit filter:                        26  (0.00633837); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.62u 0.15s 00:00:00.77 Elapsed: 00:00:00.78
# Mc/sec: 891.77
//
Query:       MMETSP1137-20121227|3376_1  [L=602]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.6e-08   30.0   4.9      0.012   13.0   0.0    5.0  5  TIGR01944 rnfB: electron transport complex, RnfABCDGE type, B subunit


Domain annotation for each model (and alignments):
>> TIGR01944  rnfB: electron transport complex, RnfABCDGE type, B subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   0.0     3e-06     0.012      54      98 ..     114     162 ..     107     184 .. 0.83
   2 ?   -1.0   0.0     0.059   2.4e+02      55      68 ..     307     320 ..     301     330 .. 0.84
   3 !   10.2   0.1   2.1e-05     0.084      53      99 ..     333     383 ..     317     393 .. 0.79
   4 ?    0.4   0.0     0.021        88      51      69 ..     467     485 ..     464     496 .. 0.81
   5 !    2.5   0.0    0.0049        20      55      93 ..     499     541 ..     496     563 .. 0.69

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 3e-06
   TIGR01944  54 ypGCrpyaeaiaegeaink.CpPG...Geavieklaellgvekealdae 98 
                 ++GC+ +a+ai+ +e +++ C  G   G+++  ++ae+l+v+k+ l+ +
  MMETSP1137-20121227|3376_1 114 FEGCQALARAITINETLKRiCLEGhsfGDEGCVAIAEALKVNKTLLNID 162
                 99**************5554998888899************98666554 PP

  == domain 2    score: -1.0 bits;  conditional E-value: 0.059
   TIGR01944  55 pGCrpyaeaiaege 68 
                 +GC+ +aeai  + 
  MMETSP1137-20121227|3376_1 307 EGCKALAEAIKMNT 320
                 79*******98765 PP

  == domain 3    score: 10.2 bits;  conditional E-value: 2.1e-05
   TIGR01944  53 GypGCrpyaeaiaegea...in.kCpPGGeavieklaellgvekealdaea 99 
                 G +GC+ +aea+  + +   i+  C+  G+++++++a++++ +++ +d + 
  MMETSP1137-20121227|3376_1 333 GDEGCTALAEAMEMNTNlkkIDlTCTKIGDEGATAIANAIKFSRSLSDMKL 383
                 779*********997762235545****************99866655554 PP

  == domain 4    score: 0.4 bits;  conditional E-value: 0.021
   TIGR01944  51 qCGypGCrpyaeaiaegea 69 
                  C  +GC+p+ ea+  +  
  MMETSP1137-20121227|3376_1 467 DCRNHGCKPLVEALKVNTT 485
                 68899********987665 PP

  == domain 5    score: 2.5 bits;  conditional E-value: 0.0049
   TIGR01944  55 pGCrpyaeaiaegeainkCpPGGe....avieklaellgveke 93 
                 +GC+ +aea+ ++  ++     G+    + +e+la++l+ +++
  MMETSP1137-20121227|3376_1 499 EGCKTLAEALQSNTMLTSMLFSGNryheESVEALAKMLQSNTT 541
                 6***********9998877776652222677889999987743 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (602 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       132  (0.0321794); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.14s 00:00:00.56 Elapsed: 00:00:00.36
# Mc/sec: 2207.15
//
Query:       MMETSP1137-20121227|3378_1  [L=177]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (177 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        40  (0.00975134); expected 82.0 (0.02)
Passed bias filter:                       35  (0.00853242); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.17s 00:00:00.34 Elapsed: 00:00:00.28
# Mc/sec: 834.36
//
Query:       MMETSP1137-20121227|3379_1  [L=57]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0044   15.2   5.0     0.0054   14.9   3.5    1.1  1  TIGR02811 formate_TAT: formate dehydrogenase region TAT target
  ------ inclusion threshold ------
       0.06   11.5   6.4      0.075   11.2   4.5    1.1  1  TIGR03685 L21P_arch: 50S ribosomal protein L12P


Domain annotation for each model (and alignments):
>> TIGR02811  formate_TAT: formate dehydrogenase region TAT target
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   3.5   2.6e-06    0.0054      17      49 ..      14      47 ..      13      53 .. 0.75

  Alignments for each domain:
  == domain 1    score: 14.9 bits;  conditional E-value: 2.6e-06
   TIGR02811 17 glavgaaagavaaatgrvasasaaaeps.epekk 49
                g+av+aa+ga+aa  g +a a+aa++p+ epe++
  MMETSP1137-20121227|3379_1 14 GVAVAAAGGAAAAPAGGAAPAAAAKAPEpEPEEE 47
                79***************99777666665134443 PP

>> TIGR03685  L21P_arch: 50S ribosomal protein L12P
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   4.5   3.6e-05     0.075      57      88 ..      23      49 ..      13      54 .. 0.35

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 3.6e-05
   TIGR03685 57 aaaapvaaaaaaaaaaeaaeeekeeeeeeeee 88
                aaaap+  aa+aaaa++++ e +eee     e
  MMETSP1137-20121227|3379_1 23 AAAAPAGGAAPAAAAKAPEPEPEEEE-----E 49
                33333333333333332222222222.....1 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       131  (0.0319356); expected 82.0 (0.02)
Passed bias filter:                      112  (0.0273038); expected 82.0 (0.02)
Passed Vit filter:                        18  (0.0043881); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.12u 0.17s 00:00:00.29 Elapsed: 00:00:00.36
# Mc/sec: 208.98
//
Query:       MMETSP1137-20121227|3381_1  [L=404]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.1e-08   30.7   0.0    3.9e-08   29.8   0.0    1.4  1  TIGR03817 DECH_helic: helicase/secretion neighborhood putative DEAH-box helicase
    1.8e-05   21.5   0.0    2.6e-05   20.9   0.0    1.1  1  TIGR00643 recG: ATP-dependent DNA helicase RecG
    0.00037   16.1   0.0     0.0016   14.0   0.0    1.9  2  TIGR04121 DEXH_lig_assoc: DEXH box helicase, DNA ligase-associated


Domain annotation for each model (and alignments):
>> TIGR03817  DECH_helic: helicase/secretion neighborhood putative DEAH-box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.8   0.0   2.8e-11   3.9e-08      37     169 ..       2     143 ..       1     151 [. 0.82

  Alignments for each domain:
  == domain 1    score: 29.8 bits;  conditional E-value: 2.8e-11
   TIGR03817  37 pwqhqaraaelahaGehvvvatgtasGkslayllPvlsalaedpratalylaPtkalaadqlrav.kelee..............rdvraatydGdt.paeerewirekaryvltnPdmlhlgilpsharWakflralryvvvdechsy 169
                 pw+hq +a + a  G++  va  t +Gk+l     +   l ++   +al+l+Pt ala+ q +++ +ele                  +   ++G + ++e+ ++ r +    ++ Pd+l ++++    r    l++++ +v+de+h+ 
  MMETSP1137-20121227|3381_1   2 PWAHQRKALDQAC-GQNLLVALPTNAGKTLIAAELIARILLQQTSRKALFLTPTGALARQQHAVLlRELEGvvheggdiigrlglIVGKRNSFEGSAlDMESESFGRCQ--CAVATPDILVRALMHAELR----LEDVALLVIDEAHNE 143
                 9*********995.9***************98888999999999*****************987426777688899999999876333556677765256666776655..567899*999999977666....788999999999985 PP

>> TIGR00643  recG: ATP-dependent DNA helicase RecG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   0.0   1.9e-08   2.6e-05     267     397 ..      26     176 ..      16     181 .. 0.82

  Alignments for each domain:
  == domain 1    score: 20.9 bits;  conditional E-value: 1.9e-08
   TIGR00643 267 sGKTvVav..lallaviesGyqvalmaPTeiLAeQhyeklrellepl.......gievalLtgslkkkkkkel.leeiasGeielvvGT.....hallqekvefkeLalviiDEQhr.FGveQRkkLrekgkek....iaphvLvmsATPI 397
                 +GKT++a+  +a + + ++  +++++ PT  LA+Q    l + le +         +++l++g+ ++ + ++l +e+ + G+ +  v T     +al++ + +++++al +iDE h   G +  + L +  ++      +p++L++sATP+
  MMETSP1137-20121227|3381_1  26 AGKTLIAAelIARILLQQTSRKALFLTPTGALARQQHAVLLRELEGVvheggdiIGRLGLIVGKRNSFEGSALdMESESFGRCQCAVATpdilvRALMHAELRLEDVALLVIDEAHNeAGDHPYSVLMDFFYKPlppvRRPQILALSATPV 176
                 7*****963378888889999************9987777777777768888656699*****9998777666145566799999999966666799999***************9636888888888888866888899**********8 PP

>> TIGR04121  DEXH_lig_assoc: DEXH box helicase, DNA ligase-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.0   1.2e-06    0.0016      14     151 ..       2     142 ..       1     153 [. 0.65
   2 ?   -0.7   0.0     0.033        45     220     272 ..     348     402 ..     330     404 .] 0.82

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 1.2e-06
   TIGR04121  14 prafQkevleaaeegesglliapTGaGKTlavflpslielaakekpkkglkvlyitPLkaLakdieraleapieel.........gleirvelrtG.DtssserarqrkkppdiLltTpEslaLllsskdaeklfkdlravvvDElHe 151
                 p a+Q+++l++a  g++ l+  pT aGKTl +  + li+ +    ++++ k+l++tP  aLa++ +  l + +e +         +l + v+ r+  + s+ + +  +  + +  + Tp+ l    +  +ae +++d+  +v+DE H+
  MMETSP1137-20121227|3381_1   2 PWAHQRKALDQAC-GQNLLVALPTNAGKTLIA--AELIARI--LLQQTSRKALFLTPTGALARQQHAVLLRELEGVvheggdiigRLGLIVGKRNSfEGSALDMESESFGRCQCAVATPDILVR--ALMHAELRLEDVALLVIDEAHN 142
                 568*****99875.799************954..4444443..234445689**********99876665555544111111122244556666542445555666666777778888876543..4445666778888888888876 PP

  == domain 2    score: -0.7 bits;  conditional E-value: 0.033
   TIGR04121 220 lpeeeeklPwaGhlglkaleevleeikkar..ttlvFtNtRsqaEllfqaLlean 272
                 l++e ++lP+  +++  +l+++ + +++ r   +lvF+  R  a ll +aL +a 
  MMETSP1137-20121227|3381_1 348 LHAELAQLPHEHFSAFPKLSAITDYLRARRalKSLVFVRHRLSAWLLSKALQAAM 402
                 667789999999999*******999987662269********9999999988776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (404 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       135  (0.0329108); expected 82.0 (0.02)
Passed bias filter:                      111  (0.02706); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.35u 0.14s 00:00:00.49 Elapsed: 00:00:00.49
# Mc/sec: 1088.24
//
Query:       MMETSP1137-20121227|3383_1  [L=69]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (69 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        22  (0.00536324); expected 82.0 (0.02)
Passed bias filter:                       21  (0.00511945); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.14s 00:00:00.26 Elapsed: 00:00:00.26
# Mc/sec: 350.28
//
Query:       MMETSP1137-20121227|3384_1  [L=558]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (558 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        93  (0.0226719); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.14s 00:00:00.51 Elapsed: 00:00:00.46
# Mc/sec: 1601.09
//
Query:       MMETSP1137-20121227|3386_1  [L=628]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00023   16.8  79.6     0.0031   13.1  10.1    3.0  3  TIGR02168 SMC_prok_B: chromosome segregation protein SMC
     0.0013   14.3  68.8      0.012   11.1   7.7    3.5  3  TIGR02169 SMC_prok_A: chromosome segregation protein SMC


Domain annotation for each model (and alignments):
>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.8  24.7   3.1e-05     0.063     671     924 ..      92     340 ..      73     350 .. 0.34
   2 !    7.7  15.9   6.6e-05      0.14     221     390 ..     301     471 ..     290     508 .. 0.47
   3 !   13.1  10.1   1.5e-06    0.0031     666     767 ..     521     623 ..     505     627 .. 0.76

  Alignments for each domain:
  == domain 1    score: 8.8 bits;  conditional E-value: 3.1e-05
   TIGR02168 671 essilerkkeieeleeeieeleekiaelekelkelekeleeleeeleklrkeleelerklselkkelerlekeveqleerlaqlekeleeleeereeleeeleeaeeelkeaeeeieeleae.ieqlkeelkalrealseleaeltelkeeaaekeerleslekeiaalekeleeleeqieeleeeiesleaeieeleeel....eeleeeleellkekasleealaelreeleelseelrelekkvkelereleelre 924
                 +s++ ++ ++ ee+++  +++e++  ++       ++el++l+++l+ +++++ ele+++++ k e+++l+ ++ ++++ ++  +++l+ le  ++ ++e ++eae+ l++    +++++++ ++q  ++++     l+  ++el + k++aa +    +  e+ iaa+e +++++e+++  ++ e++++eae+++  +e     e l+ + + l  e++s++e+l+ l+++l +++ ++ el+ +++++ ++l ++ +
  MMETSP1137-20121227|3386_1  92 RSVAAAEARAAEEIRKYKAAVEAAQVNT-------RHELDSLRSALQAMQSDAPELEERMKASKDEFRALRISADRYASLRELPHDKLTLLEFVQMRAHELVQEAEAPLEQL---RQQQQTSlMAQSGAAAQLHAVXLETSRSELANMKAAAAAAVPLGSVDESAIAAAESRARDAEQALGVAKSELSRAEAEMNRVAAEAlqrqEMLRLDKDYLVREVESSKERLSMLETKLLKKEGRVAELKAEKDAMYDKLLAASS 340
                 2222222333333333333333333333.......33333333333333344444444444444444444444444444444444444444433333333333333222222...222222202222222222223334444444444444444333333334444444444444444444444444444444444444210000122222233333333333333333333333333333333333333333333322 PP

  == domain 2    score: 7.7 bits;  conditional E-value: 6.6e-05
   TIGR02168 221 elrelelallvlrleelkeeleeleeelkeaeeeleel.eaelkeleeeleelrlekseleeeleelqkelqelkaeisrleqeieilkerleqlekeleeleeqleeleskkeeleeelaeleeeleelkeelesleaeleeaeaeleelesrleeleeeleelrsevae 390
                 e ++ +l++l ++l +++ +++el++e++++ ++l ++ +++ ++++++l++ ++ +++  e +++++++l + ++++++ e +++  +++l+    e e+l  q e++     ++e ++++ +e+le lk+e+ +l+++ +e++ae+ + +s+l e+ +++e+l++e+++
  MMETSP1137-20121227|3386_1 301 ESSKERLSMLETKLLKKEGRVAELKAEKDAMYDKLLAAsSEQHEAYSARLADADKWHTRYAEVKRQYDEQLLASSQQLAESEVQLATVRAELKLKTFECERLALQCEQSIGAARRDELATDAAKEKLELLKAEYYALQSRTAERAAEMDAKHSALIEKLNAYEALEAELDK 471
                 222333333344444444444444444444433332220223333444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444443 PP

  == domain 3    score: 13.1 bits;  conditional E-value: 1.5e-06
   TIGR02168 666 gsek.tessilerkkeieeleeeieeleekiaelekelkelekeleeleeeleklrkeleelerklselkkelerlekeveqleerlaqlekeleeleeeree 767
                 ++++  ++++ler++e+e+l+e++ +++++i+   +  + l+++l   e+++++l+++le + ++ se+++ ++rl+++v+ l+ +l++  +++ +l++ r++
  MMETSP1137-20121227|3386_1 521 RTAEsLRATLLERSSEVERLKEQLVDAQRRIRLSAQPQAFLAEQLHISEQQVHQLQRRLEAAATDQSEQQEAMARLQQQVRMLKTDLERVLQQRGSLDALRTT 623
                 3333466778888888888888888888888888888888888888888888888888888888888888888888888888888888888888877776665 PP

>> TIGR02169  SMC_prok_A: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.8  15.3   0.00048      0.98     283     500 ..      64     282 ..      35     289 .. 0.63
   2 !    8.2  13.4   4.4e-05      0.09     264     446 ..     296     475 ..     289     485 .. 0.88
   3 !   11.1   7.7   5.9e-06     0.012     671     783 ..     503     615 ..     492     625 .. 0.69

  Alignments for each domain:
  == domain 1    score: 4.8 bits;  conditional E-value: 0.00048
   TIGR02169 283 eklgeeeqlav..kekleelkaeiekleraiaekeee.ledaeerlakaeaeidklkeeieelereieeekkereklkeelkelkeeleelraeleevdkeaaelreelkelkekleklkeelnelkreldrlleelkrleeelaelka.elerieekiaeleeeleelaeeikkaeqkleqlked.lekaekelrklkeeleklekelselerelaeleaqa 500
                 e+ g  +  a+  +e +e l+ae  +l+r++a++e + +e++ + +a  ea   ++++e+++l+ ++++ + +  +l+e++k++k+e ++lr  ++      a lre  +++ + le ++ + +el +e +  le+l+++++    ++  + +++++   e   +  +  ++ ++a   l ++ e   ++ae++ r+ ++ l   ++els +e e++++ a+a
  MMETSP1137-20121227|3386_1  64 EQSGRARLDAIlaQEAVEALQAENVSLRRSVAAAEARaAEEIRKYKAAVEAAQVNTRHELDSLRSALQAMQSDAPELEERMKASKDEFRALRISADR----YASLRELPHDKLTLLEFVQMRAHELVQEAEAPLEQLRQQQQTSLMAQSgAAAQLHAVXLETSRSELANMKAAAAAAVPLGSVDESaIAAAESRARDAEQALGVAKSELSRAEAEMNRVAAEA 282
                 55555554443338999*************998876615777788888888899999******************************9999987765....45566666666667777777777777666666665555544433333202222333222222222222233333333344433331344455555555555555556666666665555554 PP

  == domain 2    score: 8.2 bits;  conditional E-value: 4.4e-05
   TIGR02169 264 lekeleeiekkleelnkkieklgeeeqlavkekleelkaei.ekleraiaekeeeledaeerlakaeaeidklkeeieelereieeekkereklkeelkelkeeleelraeleevdkeaaelreelkelkekleklkeelnelkreldrlleelkrleeelaelkaelerieekiaeleeelee 446
                 l +e+e+ +++l+ l++k+ k  e++ +++k++   +  ++ +  +++ +++  +l da++   ++ +  ++++e++ + +++++e +++ + + +elk +  e e l  + e+   +a++   +++++kekle lk e + l+   +r  e++ +++++ + l ++l++ e+  ael++++ +
  MMETSP1137-20121227|3386_1 296 LVREVESSKERLSMLETKLLK-KEGRVAELKAEKDAMYDKLlAASSEQHEAYSARLADADKWHTRYAEVKRQYDEQLLASSQQLAESEVQLATVRAELKLKTFECERLALQCEQSIGAARRDELATDAAKEKLELLKAEYYALQ---SRTAERAAEMDAKHSALIEKLNAYEALEAELDKSVMQ 475
                 567899999999999999988.699999999998888777614555667788999*******999999999****************************************9999999999999999****************9...9999999999999999999999999999999887655 PP

  == domain 3    score: 11.1 bits;  conditional E-value: 5.9e-06
   TIGR02169 671 asekeklerlrerleeLereleslqselrriekrldelssklsdaekkieeiekeleqleeeeeklkerleeleeklseleeeleekkeelkeleaeieeleeklaklkeale 783
                 ++  e+   l+++l + +r  esl++ l ++ ++++ l+++l da+++i+   + +  l+e+ + +++++++l+++l++   +  e++e +++l++++  l+ +l+++ ++  
  MMETSP1137-20121227|3386_1 503 QRRLEQCLALSRDLLASQRTAESLRATLLERSSEVERLKEQLVDAQRRIRLSAQPQAFLAEQLHISEQQVHQLQRRLEAAATDQSEQQEAMARLQQQVRMLKTDLERVLQQRG 615
                 44556666677777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777766655544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (628 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       478  (0.116529); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.79u 0.21s 00:00:01.00 Elapsed: 00:00:00.68
# Mc/sec: 1218.96
//
Query:       MMETSP1137-20121227|3387_1  [L=386]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (386 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        97  (0.023647); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.17s 00:00:00.45 Elapsed: 00:00:00.40
# Mc/sec: 1273.69
//
Query:       MMETSP1137-20121227|3388_1  [L=633]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   3.8e-159  528.1   0.0   7.8e-159  527.1   0.0    1.5  1  TIGR00457 asnS: asparagine--tRNA ligase
    2.7e-49  166.1   0.6    2.4e-41  139.9   0.1    3.0  3  TIGR00458 aspS_arch: aspartate--tRNA ligase
    1.2e-18   64.6   0.4      5e-09   32.8   0.0    3.6  2  TIGR00459 aspS_bact: aspartate--tRNA ligase
    1.1e-16   58.4   0.6    8.4e-13   45.6   0.1    3.9  2  TIGR00499 lysS_bact: lysine--tRNA ligase
    3.3e-09   34.5   0.0    2.7e-07   28.2   0.0    3.3  1  TIGR00462 genX: EF-P lysine aminoacylase GenX
     0.0028   14.9   0.0        2.4    5.3   0.0    3.1  3  TIGR02367 PylS_Cterm: pyrrolysine--tRNA ligase, C-terminal region


Domain annotation for each model (and alignments):
>> TIGR00457  asnS: asparagine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  527.1   0.0  1.1e-161  7.8e-159       2     453 ..     173     631 ..     172     633 .] 0.94

  Alignments for each domain:
  == domain 1    score: 527.1 bits;  conditional E-value: 1.1e-161
   TIGR00457   2 aaikdlleqvkkavdeevkvsgWvktkRsskkiaFlelrDGsslkalqavikkeleeeleqelkklttgssvsvsgkvvespkkkqelElkvkkievvgeaeeedyplqkkehsleflrelahLrlRtktlsAvlkvRsalskaiheyfqkegfvkvstPiltssdcEGagelFkvkt..........eg.vdfskdffgkeayLtvsgqlelEalalalskvytlgptFRAEksntkRHlsEfwmiEpElaFvnledllqlieelikyiikavleeakqelkfleknvekkkikkleeiisskfaritYtdAieiLkesdakkkfeledlwGvdlktehErflaeeyfksPvfvtdyPkeikaFYmkqnddektvaavDllvPkiGEiiGGseReddldkLeerlkeegldteelkWyldlRkyGsvphsGfGlGleRlvayltglenirdaipfpRtaesi 453
                 +++k +++  k av++++ vsgW +t R +k++aF+e++DGs+l  lq vi+k++ +  ++      tg+          s   + +           + a   +    +     e+lr+l+hLr+Rt+t++Av+++R+al++a+h++fq++gf++v++Pi+t sdcEGage+F+v+t          +g vd+++dffgk+a+Ltvsgql++E +a+a++ vyt+gptFRAE+snt+RHl+EfwmiEpE+aF+++ d+++ +e++++y i +vle++ +++kfl+k+ + +  k+l+ + ++ far+tYt+Aie+L ++ ++ k+e+++ wG++l+tehEr+lae+y k+P++v +yPk++kaFYm+ ndd+ktvaa+D+l+P++GE++GGs+Re++ld+L +r++e+gl+++e   yldlR++G+  h+GfG+G+eRlv+y tg++nird+ipfpR+++++
  MMETSP1137-20121227|3388_1 173 VSVKRVFKAGKAAVGKSILVSGWARTVRMQKEMAFVEINDGSTLVGLQLVISKKETNGWDELSAIGATGCXXXXXXXXXXSTXXRAAXGXXXXXRASXSXAX-XTXRXXRSXXXXEHLRTLTHLRPRTNTFGAVMRIRNALAYATHTFFQNNGFMYVNSPIITGSDCEGAGEMFQVTTldvskppktpDGaVDYAQDFFGKQAFLTVSGQLNAEHYACAFGSVYTFGPTFRAEDSNTTRHLAEFWMIEPEIAFADIIDDMNCAESYLRYCIAHVLEHCPEDIKFLAKHYDPELPKTLRFVADTPFARMTYTEAIEVLLKE-KNVKWEFPPEWGKELQTEHERYLAETYCKKPLIVYNYPKDCKAFYMRLNDDNKTVAAMDVLFPRLGEMVGGSQREERLDVLLRRMEEMGLEKDEA--YLDLRRFGTQKHAGFGVGFERLVTYTTGMTNIRDVIPFPRAPGTM 631
                 6899*************************************************8777766665666788888888777777766666666666655566666.67778888899************************************************************************99655********************************************************************************************************99999999*************9998.57788***************************************************************************************975..9***************************************99875 PP

>> TIGR00458  aspS_arch: aspartate--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    3.7   0.0    0.0076       5.2      11      51 ..     186     228 ..     179     239 .. 0.82
   2 !   19.2   0.0   1.6e-07   0.00011     125     177 ..     298     350 ..     288     354 .. 0.91
   3 !  139.9   0.1   3.5e-44   2.4e-41     174     423 ..     367     628 ..     356     632 .. 0.85

  Alignments for each domain:
  == domain 1    score: 3.7 bits;  conditional E-value: 0.0076
   TIGR00458  11 dgkevllrgwvheirdlGalifvllrdregli..qilvkkkkv 51 
                  gk +l+ gw   +r + +++fv + d  +l+  q ++ kk +
  MMETSP1137-20121227|3388_1 186 VGKSILVSGWARTVRMQKEMAFVEINDGSTLVglQLVISKKET 228
                 57999***********************999844666666554 PP

  == domain 2    score: 19.2 bits;  conditional E-value: 1.6e-07
   TIGR00458 125 rrpkvqaifkirsevlesvreflaeegfievntPklvasateGGtelfeityf 177
                 r+ +  a+++ir+ +  +   f++++gf+ vn+P + +s  eG  e+f++t +
  MMETSP1137-20121227|3388_1 298 RTNTFGAVMRIRNALAYATHTFFQNNGFMYVNSPIITGSDCEGAGEMFQVTTL 350
                 778889********************************************965 PP

  == domain 3    score: 139.9 bits;  conditional E-value: 3.5e-44
   TIGR00458 174 ityfereaflaqsPqlykqvllaaglervyeiaPifraeehntkrhlnevisidiemafedhkdvldileelvvrvfedvaeklkk........elevlevkle.vpeeklerltydeaieil.rakGkei....kdgedlsteaekllGekmdglyfitd.fPteikPfytmPdednPeisksfdlly.rdleissGaqrihdydllvekikakGlePeslksyleafkyGmPPhaGwGlGaerlvmvlldlknireavlfPrdr 423
                   +f ++afl+ s ql+     a+ +  vy  +P frae++nt+rhl+e+  i+ e+af+d  d ++  e  +   + +v e++ +        + + l  +l  v ++++ r+ty eaie+l + k ++     ++g +l te e++l e++  +  i+  +P + k fy+  + d+ ++  + d+l+ r  e+  G+qr    d+l  ++ + Gle +  + yl+  ++G   haG G+G erlv   +++ nir+++ fPr +
  MMETSP1137-20121227|3388_1 367 QDFFGKQAFLTVSGQLNAEHY-ACAFGSVYTFGPTFRAEDSNTTRHLAEFWMIEPEIAFADIIDDMNCAESYLRYCIAHVLEHCPEdikflakhYDPELPKTLRfVADTPFARMTYTEAIEVLlKEKNVKWefppEWGKELQTEHERYLAETYCKKPLIVYnYPKDCKAFYMRLN-DDNKTVAAMDVLFpRLGEMVGGSQREERLDVLLRRMEEMGLEKD--EAYLDLRRFGTQKHAGFGVGFERLVTYTTGMTNIRDVIPFPRAP 628
                 569**************9875.778***********************************************************9944444443222222233234699************8624555443223369***************9888777655*********7766.67778888886652777************************999..79****************************************76 PP

>> TIGR00459  aspS_bact: aspartate--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.2   0.1   1.5e-09     1e-06      12     263 ..     183     451 ..     171     493 .. 0.67
   2 !   32.8   0.0   7.4e-12     5e-09     482     557 ..     558     627 ..     523     632 .. 0.81

  Alignments for each domain:
  == domain 1    score: 25.2 bits;  conditional E-value: 1.5e-09
   TIGR00459  12 ekslgkkvtlaGWverrkdlGeliFidlrDkegiv..qvvsdkkkealelakelrnedvvqvkgkvslreeesknrnldtgeievlaeeitvlnkskkkPleiekkeaeeevrlkyRYLdLRrpkmqqrlklRskvtkavRnflddkgFleietPiLtkatPeGardyLvPsRvk.....kgefyaLpqsPqlf.kq.LLmvsG...vdkY.......yqiarcfRDeDlRaDRq.PeftqiDlemsFlnqedvmelveklvsevfkevkk...i 263
                 + ++gk++ ++GW ++ +   e+ F+ + D + +v  q+v +kk  +    ++  +   + ++g           +     +           + +  +    ++    e++r    +L  R +++   ++ R+ ++ a+  f++++gF+ ++ Pi+t +  eGa +    + +      k    a++ +   f kq  L vsG    ++Y       y     fR eD+   R   ef  i+ e++F++  d m+ +e+ ++  + +v +    
  MMETSP1137-20121227|3388_1 183 KAAVGKSILVSGWARTVRMQKEMAFVEINDGSTLVglQLVISKK--ET---NGWDELSAIGATGCXXXXXXXXXXSTXXRAAXGXXXXXRASXSXAXXTXRXXRSXXXXEHLRT-LTHLRPRTNTFGAVMRIRNALAYATHTFFQNNGFMYVNSPIITGSDCEGAGEMFQVTTLDvskppKTPDGAVDYAQDFFgKQaFLTVSGqlnAEHYacafgsvYTFGPTFRAEDSNTTRHlAEFWMIEPEIAFADIIDDMNCAESYLRYCIAHVLEhcpE 451
                 5689*****************************87447777776..44...445555567777777666655544444333333333333334444444455556666677653.5678889999999*************************************996655554444666333445555555554443455666333244444433338888999****999997579**********999999999999988877777664442 PP

  == domain 2    score: 32.8 bits;  conditional E-value: 7.4e-12
   TIGR00459 482 elGgGsiRihdkelqekvfeilgideeearekFgflleafeyGaPphaGlalGlDRlvmllaetdsiRdviaFPkt 557
                 e+ gGs R    ++  + +e +g++++e        l+   +G+  haG+++G++Rlv   ++ ++iRdvi FP++
  MMETSP1137-20121227|3388_1 558 EMVGGSQREERLDVLLRRMEEMGLEKDE------AYLDLRRFGTQKHAGFGVGFERLVTYTTGMTNIRDVIPFPRA 627
                 7778888888888888888999988886......458999**********************************86 PP

>> TIGR00499  lysS_bact: lysine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.9   0.0    0.0013      0.88      50      93 ..     184     229 ..     154     237 .. 0.77
   2 !   45.6   0.1   1.2e-15   8.4e-13     239     491 ..     390     626 ..     298     628 .. 0.72

  Alignments for each domain:
  == domain 1    score: 5.9 bits;  conditional E-value: 0.0013
   TIGR00499  50 eekelevsiaGRikakRsmgkatFitlqdes..gklqlyvnkdkls 93 
                  +  +++ ++G   + R+++ ++F++++d s  + lql+++k++++
  MMETSP1137-20121227|3388_1 184 AAVGKSILVSGWARTVRMQKEMAFVEINDGStlVGLQLVISKKETN 229
                 4456788999*******9999**********555789*99999864 PP

  == domain 2    score: 45.6 bits;  conditional E-value: 1.2e-15
   TIGR00499 239 GlekvyEigrvFRnEGvd.ttHnpEFttiElYqayadyedllelteellktlvkellgtlkikykeeeldlkkpvkkitmleaikkidketgislddlkdsetakalakklaievaekslslgkilnklfeefvEetliq.PtfiteyPaeisPL.AkrddenpelteRFElFikgkEianaysElndpldqrerfeeqvaekeagddeasllDedfvealeyGlpptgGlGiGiDRlvmlltdsksirdvllFpa 491
                  +  vy  g +FR E  + t+H +EF +iE   a+ad+ d ++ +e+ l++ + ++l+++   +k     +++++       +++ + ++t   +  ++ +e+ + l k+++++  e     gk l++  e+++ et+++ P ++++yP+       + +d+n+ ++    lF +  E++ +        + +er++  +++    ++   + De +++  ++G    +G+G+G +Rlv   t   +irdv++Fp 
  MMETSP1137-20121227|3388_1 390 AFGSVYTFGPTFRAEDSNtTRHLAEFWMIEPEIAFADIIDDMNCAESYLRYCIAHVLEHCPEDIKFLAKHYDPEL-----PKTLR-FVADT--PFARMTYTEAIEVLLKEKNVKW-EFPPEWGKELQTEHERYLAETYCKkPLIVYNYPKDCKAFyMRLNDDNKTVAAMDVLFPRLGEMVGG-------SQREERLDVLLRRM---EEMGLEKDEAYLDLRRFGTQKHAGFGVGFERLVTYTTGMTNIRDVIPFPR 626
                 3789**********9876268************************************776655555555555433.....22222.33445..578999999********99999.8888888889999999888887766*********99876278899999999999999888777766.......44556666555443...4556678*****************************************95 PP

>> TIGR00462  genX: EF-P lysine aminoacylase GenX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.2   0.0   3.9e-10   2.7e-07      52     304 .]     371     624 ..     306     624 .. 0.61

  Alignments for each domain:
  == domain 1    score: 28.2 bits;  conditional E-value: 3.9e-10
   TIGR00462  52 keklyLqtSPEyamKrLLaagsgkifqlakvfRneer.grlHnpEFtmLEwYrvgadleelmeeveellqevle..........deeaeverlsyaeaferylgidplta.....sleelkeaaekageaaseeedredlldlllvekvepklgkerptflydyPas.qaaLarikkddervAeRfElYikglElaNgfeELtdaaeqrkRfeednaerkalgleevpldekllaaleaglpecsGvAlGlDRLlmlalgaesieevlaf 304
                  ++ +L+ S  +   +  a   g+++ ++ +fR e++  ++H  EF m+E   + ad+ + m+  e+ l+ +++          +    +    y+  + ++l++   t       +e+++ ++++++++ +   ++ + l++   + + ++   ++p ++y+yP++ +a   r+++d++ vA+   l+ +  E       +   +++++R++   ++ +++gl   + de++l+  + g  + +G  +G++RL+  ++g ++i++v+ f
  MMETSP1137-20121227|3388_1 371 GKQAFLTVSGQLNAEHY-ACAFGSVYTFGPTFRAEDSnTTRHLAEFWMIEPEIAFADIIDDMNCAESYLRYCIAhvlehcpediK----FLAKHYDPELPKTLRFVADTPfarmtYTEAIEVLLKEKNVKWEFPPEWGKELQTEHERYLAET-YCKKPLIVYNYPKDcKAFYMRLNDDNKTVAAMDVLFPRLGE-------MVGGSQREERLDVLLRRMEEMGL---EKDEAYLDLRRFGTQKHAGFGVGFERLVTYTTGMTNIRDVIPF 624
                 45667777777766654.556799*********99985789*********88888888888888888888888878777754441....223333333333333322111111222333344444444444444444444444443333333.3468********86267778999999999987666666555.......55556677788776666666665...55**************************************986 PP

>> TIGR02367  PylS_Cterm: pyrrolysine--tRNA ligase, C-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.0     0.038        26      35      53 ..     316     334 ..     287     342 .. 0.79
   2 !    5.3   0.0    0.0035       2.4     107     157 ..     394     449 ..     392     458 .. 0.79
   3 ?    3.5   0.0     0.012       8.3     193     227 ..     586     620 ..     564     623 .. 0.73

  Alignments for each domain:
  == domain 1    score: 1.8 bits;  conditional E-value: 0.038
   TIGR02367  35 lakalvdrGfvevkspili 53 
                    +++++Gf+ v+spi+ 
  MMETSP1137-20121227|3388_1 316 THTFFQNNGFMYVNSPIIT 334
                 447899***********96 PP

  == domain 2    score: 5.3 bits;  conditional E-value: 0.0035
   TIGR02367 107 ifeiGscyrke.sdGsehleeftmln....lvelGspeeerrerleelikevleel 157
                 ++  G+ +r e s+ ++hl ef m++    ++++   +++ +  l   i +vle+ 
  MMETSP1137-20121227|3388_1 394 VYTFGPTFRAEdSNTTRHLAEFWMIEpeiaFADIIDDMNCAESYLRYCIAHVLEHC 449
                 6788*****8758999********74333378888888888888888888888875 PP

  == domain 3    score: 3.5 bits;  conditional E-value: 0.012
   TIGR02367 193 ifldrkwgvvkpwvGlGfGlerllkvredtknvrs 227
                  +ld +   ++   G G G+erl+    +++n+r 
  MMETSP1137-20121227|3388_1 586 AYLDLRRFGTQKHAGFGVGFERLVTYTTGMTNIRD 620
                 566644333455789******************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (633 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       181  (0.0441248); expected 82.0 (0.02)
Passed bias filter:                      141  (0.0343735); expected 82.0 (0.02)
Passed Vit filter:                        18  (0.0043881); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.62u 0.18s 00:00:00.80 Elapsed: 00:00:00.79
# Mc/sec: 1057.58
//
Query:       MMETSP1137-20121227|3389_1  [L=749]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   3.8e-224  744.4   0.0     5e-224  744.1   0.0    1.0  1  TIGR00763 lon: ATP-dependent protease La
    1.1e-09   34.9   1.8    2.2e-09   33.9   0.0    2.2  2  TIGR02639 ClpA: ATP-dependent Clp protease ATP-binding subunit ClpA
    2.1e-05   21.3   0.1    2.1e-05   21.3   0.0    1.8  2  TIGR01241 FtsH_fam: ATP-dependent metallopeptidase HflB
    4.7e-05   20.4   0.0    0.00014   18.8   0.0    1.8  1  TIGR00635 ruvB: Holliday junction DNA helicase RuvB
    0.00019   18.4   0.1     0.0027   14.6   0.0    2.3  2  TIGR00382 clpX: ATP-dependent Clp protease, ATP-binding subunit ClpX
    0.00049   16.3   0.0     0.0009   15.5   0.0    1.3  1  TIGR01243 CDC48: AAA family ATPase, CDC48 subfamily
     0.0011   16.8   0.3     0.0049   14.7   0.0    2.1  2  TIGR02173 cyt_kin_arch: putative cytidylate kinase
     0.0029   14.7   0.2     0.0029   14.7   0.1    2.8  3  TIGR02397 dnaX_nterm: DNA polymerase III, subunit gamma and tau
     0.0035   14.4   1.0      0.037   11.0   0.0    2.7  3  TIGR02957 SigX4: RNA polymerase sigma-70 factor, TIGR02957 family
     0.0048   13.9   1.4      0.016   12.1   0.0    2.1  2  TIGR01242 26Sp45: 26S proteasome subunit P45 family
      0.005   14.7   0.0      0.005   14.7   0.0    2.6  3  TIGR03499 FlhF: flagellar biosynthesis protein FlhF
  ------ inclusion threshold ------
       0.03   11.1   8.4      0.051   10.3   0.0    2.8  3  TIGR00390 hslU: ATP-dependent protease HslVU, ATPase subunit


Domain annotation for each model (and alignments):
>> TIGR00763  lon: ATP-dependent protease La
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  744.1   0.0  1.4e-226    5e-224       2     579 ..     143     717 ..     142     739 .. 0.95

  Alignments for each domain:
  == domain 1    score: 744.1 bits;  conditional E-value: 1.4e-226
   TIGR00763   2 llpvrrkvlfPgfilkivvkdeksiklikealkkkqkyllaflkkdkeeeedvieeeedvykvgvlaqilelvklkdekskketlkvvleglrrikikelvekeevlvvkveelkeeelekdd.....eevkalseeiletlkeliklsklfreqvetlkalekleepakladlvaaslelkeveekqevleevnvekRLkkvlellkkelelaklqekiakkveeklekeqreylLkeqlkaikkElGeekdkkdelieklkekleelklpeevlkviekeleklelleasssefsvtrnYldwltdlPwgkvskenldlkrakeiLdedHyglkkvKeRilEylavkklrkklkgkilclvGPPGVGKtSlaksiAkalnrkfvrlslGGlkDvaeikGHRrtYvGalPGkiiqglkkvktenPlillDEiDKlgssvrGdPasaLLEvLDpeqNakFlDhYldvpiDlskVlfvataNsidtiPepLldRmEvielsgYveeeKleiakkyLipkaleeaglkkeeveisdealkelikkYtreaGVRnLekqiekilRkaalklveekekkkeaeeeke 579
                 ++p+++++lfPg++++ +v+d ++++++ +a+ ++++y+++fl k + +++  +++ ++v++vg+la+i +l++++        l+++l g +rik+++ v++ +v++++vee k+  +e +d     +  ka s+e+++t+ke++kl+++f+eq++++ + ++++e+ klad+ aa ++ ++ +  qevl +++v++R++k+l llkkelel+klq++i+k+v+ek++ +qr+ylL+eqlk+ikkElG ekd+k++l++k++e++ +l++p+e++kvi +e++kl+ le+ss+ef+vtrnYldwlt lPwg +sken++lkra+++L edHygl+++K+RilE++av+ l ++++gki+c+vGPPGVGKtS++ksiAkalnr+f r+s+GGl+DvaeikGHRrtYvGa+PGk+iq+lk  +t+nP++l+DEiDKlg++++GdPasaLLEvLDp qN++FlDhYldvp+DlskVlf++taN+ dtiP pLldRmEv++lsgY+ +eK+eia++yL p+a++++gl+ +++e++++a++ li+ Y+reaGVRnL+k+ieki+Rk+alk+v++++++ e+  e+e
  MMETSP1137-20121227|3389_1 143 IFPFPTRPLFPGVYQPCEVTDAALVEALVTAKASSHPYVGVFLPKPEFSDQASLTDPTQVHSVGTLASIARLAPTPR------GLQLLLLGGKRIKLHRAVQTIPVMMARVEEAKDVVTEVEDagegpQLAKAYSMEVMQTIKEILKLNPFFKEQMQMILERSEIHEAGKLADFGAALTT-ADAQSLQEVLGTLDVTERIEKTLLLLKKELELSKLQSQISKQVDEKISSNQRRYLLMEQLKQIKKELGLEKDDKEALVTKFSERIATLQVPAEAKKVIXEEIQKLQSLESSSTEFNVTRNYLDWLTALPWGIYSKENFKLKRAQKVLAEDHYGLDDIKDRILEFIAVSALCGSTQGKIICFVGPPGVGKTSIGKSIAKALNREFYRFSVGGLTDVAEIKGHRRTYVGAMPGKLIQCLKASGTANPVVLIDEIDKLGRGYQGDPASALLEVLDPSQNSSFLDHYLDVPVDLSKVLFLCTANVSDTIPGPLLDRMEVVRLSGYILDEKVEIARRYLEPTARQQMGLSADHMELTQDAIS-LIRWYCREAGVRNLQKHIEKICRKVALKVVQNSQERDEVAPEAE 717
                 68999*********************************************************************777......89*****************************976666655222224579*********************************************999.67*****************************************************************************************************************************************************************************************************************************************************************************************************************************************************************95.89****************************99776663333222 PP

>> TIGR02639  ClpA: ATP-dependent Clp protease ATP-binding subunit ClpA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.9   0.0   6.4e-12   2.2e-09     441     583 ..     449     590 ..     405     621 .. 0.80
   2 ?   -1.9   0.0      0.44   1.5e+02     678     712 ..     664     696 ..     637     704 .. 0.78

  Alignments for each domain:
  == domain 1    score: 33.9 bits;  conditional E-value: 6.4e-12
   TIGR02639 441 ssddkekLknlekeLkkkifGqdeaiealvkaikrsraGlkeenkPvgsflfvGptGvGktelakqLaeelgvellrfDmseymekhtvsrliGsPpGyvGfeeGGlLteavrk..nPyavlLlDeieka....hpDilnilLqvmDya 583
                  s+++ kLk  +k L +  +G d+  +++ + i  s    +++ k      fvGp GvGkt + k++a++l+ e+ rf +   ++   v+ + G    yvG   G +L ++++   + + v+L+Dei+k       D  + lL v+D +
  MMETSP1137-20121227|3389_1 449 YSKENFKLKRAQKVLAEDHYGLDDIKDRILEFIAVSALCGSTQGKI---ICFVGPPGVGKTSIGKSIAKALNREFYRFSVGGLTD---VAEIKGHRRTYVGAMPG-KLIQCLKAsgTANPVVLIDEIDKLgrgyQGDPASALLEVLDPS 590
                 5678999**************************9987665555554...569****************************99876...9************8766.56666665116788********962222458888899998854 PP

  == domain 2    score: -1.9 bits;  conditional E-value: 0.44
   TIGR02639 678 eleleddaikylaekgydeefGarelkrvieeeik 712
                 ++el++dai+++  + y +e G+r+l++ ie+  +
  MMETSP1137-20121227|3389_1 664 HMELTQDAISLI--RWYCREAGVRNLQKHIEKICR 696
                 688999999988..6799**********9987554 PP

>> TIGR01241  FtsH_fam: ATP-dependent metallopeptidase HflB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.4      0.95   3.3e+02     414     479 ..     325     396 ..     312     407 .. 0.56
   2 !   21.3   0.0   6.1e-08   2.1e-05      42     163 ..     451     574 ..     446     582 .. 0.71

  Alignments for each domain:
  == domain 1    score: -2.4 bits;  conditional E-value: 0.95
   TIGR01241 414 klgavayeeeeeevl.l.gkel...kkekeyseetakeiDeev.kriieeaykkakeilkekkeelellake 479
                  lg++ ++e+ e++l l +kel   k ++++s+++ ++i ++  + ++ e+ k++k+ l  +k++ e+l+++
  MMETSP1137-20121227|3389_1 325 VLGTLDVTERIEKTLlLlKKELelsKLQSQISKQVDEKISSNQrRYLLMEQLKQIKKELGLEKDDKEALVTK 396
                 556666554433332021233200023344455555555443313477788888887777777777766665 PP

  == domain 2    score: 21.3 bits;  conditional E-value: 6.1e-08
   TIGR01241  42 kaklleeekvkvtfkdvaGideakeelveivdfLknpkkftklGakiPkGvllvGpPGtGktLlakavaGeagvpffsisGsdfvem.........fvGvGasrvrDlfeqakknaPciifiDeiDavGrk 163
                 k ++  +  +kv  +d  G+d+ k+ ++e++         +  G+   k + +vGpPG+Gkt + k++a   ++ f++ s   + ++         +vG    ++   + +a  +a  +++iDeiD +Gr 
  MMETSP1137-20121227|3389_1 451 KENFKLKRAQKVLAEDHYGLDDIKDRILEFIAVS------ALCGSTQGKIICFVGPPGVGKTSIGKSIAKALNREFYRFSVGGLTDVaeikghrrtYVGAMPGKLIQCL-KASGTANPVVLIDEIDKLGRG 574
                 5555566678888888889999998888877542......456888889999************************877655444431112222224444334444444.56667777999********85 PP

>> TIGR00635  ruvB: Holliday junction DNA helicase RuvB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.0   4.1e-07   0.00014       4      61 ..     465     523 ..     462     576 .. 0.84

  Alignments for each domain:
  == domain 1    score: 18.8 bits;  conditional E-value: 4.1e-07
   TIGR00635   4 eefiGqekvkeklqlfikaakkrkealdh.vllyGPPGlGkttlakiiakelgvklkit 61 
                 e++ G +++k+++  fi  +     +    + ++GPPG+Gkt++ k iak l+ +    
  MMETSP1137-20121227|3389_1 465 EDHYGLDDIKDRILEFIAVSALCGSTQGKiICFVGPPGVGKTSIGKSIAKALNREFYRF 523
                 6788999999999888888877776666615689******************9887555 PP

>> TIGR00382  clpX: ATP-dependent Clp protease, ATP-binding subunit ClpX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.0     8e-06    0.0027     120     197 ..     495     574 ..     485     582 .. 0.80
   2 ?    0.9   0.0      0.11        38     345     402 ..     660     715 ..     634     726 .. 0.74

  Alignments for each domain:
  == domain 1    score: 14.6 bits;  conditional E-value: 8e-06
   TIGR00382 120 illiGptGsGktllaqtlakeldvpf...aiadattltea.GyvGedvenillkllqaadydvekaekGiiyideidkiark 197
                 i ++Gp G Gkt + +++ak l+  f   ++   t ++e  G+    v  +  kl+q  +   + + + ++ ideidk+ r 
  MMETSP1137-20121227|3389_1 495 ICFVGPPGVGKTSIGKSIAKALNREFyrfSVGGLTDVAEIkGHRRTYVGAMPGKLIQCLK--ASGTANPVVLIDEIDKLGRG 574
                 789********************8761115666666666347777789999999999865..5678899*********9985 PP

  == domain 2    score: 0.9 bits;  conditional E-value: 0.11
   TIGR00382 345 ldevelefeeealkaiakkalerktGarglrsiveellldvmfelpsledlekvvitk 402
                 l   ++e++++a++ i      r++G r l+  +e+++  v  ++ + ++ ++ v  +
  MMETSP1137-20121227|3389_1 660 LSADHMELTQDAISLIR--WYCREAGVRNLQKHIEKICRKVALKVVQNSQERDEVAPE 715
                 45555667788888774..567999**************9999887766555444444 PP

>> TIGR01243  CDC48: AAA family ATPase, CDC48 subfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   2.6e-06    0.0009     208     283 ..     488     571 ..     451     578 .. 0.74

  Alignments for each domain:
  == domain 1    score: 15.5 bits;  conditional E-value: 2.6e-06
   TIGR01243 208 gieppkgvllygppgtgktllakavaneagayfi..aing....peims...kyygeseerlreifkeaeenapsiifideidai 283
                 g    k + ++gppg gkt + k++a   +  f+  ++ g     ei      y+g    +l + +k +   a  +++ideid +
  MMETSP1137-20121227|3389_1 488 GSTQGKIICFVGPPGVGKTSIGKSIAKALNREFYrfSVGGltdvAEIKGhrrTYVGAMPGKLIQCLKAS-GTANPVVLIDEIDKL 571
                 5566788999********************9998334445333357754222699*******9999865.56666899****975 PP

>> TIGR02173  cyt_kin_arch: putative cytidylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0       1.2   3.9e+02      47      67 ..     345     365 ..     314     376 .. 0.67
   2 !   14.7   0.0   1.4e-05    0.0049       2      42 ..     494     536 ..     493     539 .. 0.84

  Alignments for each domain:
  == domain 1    score: -1.2 bits;  conditional E-value: 1.2
   TIGR02173  47 eskkaeeekeiDkkiDrkike 67 
                 e++  + + +i k++D+ki  
  MMETSP1137-20121227|3389_1 345 ELELSKLQSQISKQVDEKISS 365
                 445555566677777766653 PP

  == domain 2    score: 14.7 bits;  conditional E-value: 1.4e-05
   TIGR02173   2 iivisGpPGsGkttvakilaeklslkl..isaGkirelaekkg 42 
                 ii   GpPG Gkt++ k +a+ l+ ++   s G + ++ae kg
  MMETSP1137-20121227|3389_1 494 IICFVGPPGVGKTSIGKSIAKALNREFyrFSVGGLTDVAEIKG 536
                 68889******************96642378888999998766 PP

>> TIGR02397  dnaX_nterm: DNA polymerase III, subunit gamma and tau
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   4.8      0.85   2.9e+02     200     342 ..     291     436 ..     265     444 .. 0.58
   2 !   14.7   0.1   8.6e-06    0.0029      40      62 ..     496     518 ..     484     522 .. 0.90
   3 ?   -1.1   0.1      0.56   1.9e+02     189     256 ..     638     708 ..     625     736 .. 0.58

  Alignments for each domain:
  == domain 1    score: -1.7 bits;  conditional E-value: 0.85
   TIGR02397 200 aLeliarkaeGslRDalslldqlislskgkitlekveellglvseekllelleailkkdl......eealklleellekgvdleklledliellrdlllvkktkselleveeeeeeslke..kaeklslekllellkilleaekelkvsen 342
                  +++i +++e  + +a +l d  ++l+    ++++++e+lg+++  + +e +  +lkk+l      +++ k+++e +++++    l+e+l ++ ++l l k+ k+ l+++ +e+ ++l+   +a+k+  e++++ l+ l+++++e++v++n
  MMETSP1137-20121227|3389_1 291 QMQMILERSE--IHEAGKLADFGAALTTA--DAQSLQEVLGTLDVTERIEKTLLLLKKELelsklqSQISKQVDEKISSNQRRYLLMEQLKQIKKELGLEKDDKEALVTKFSERIATLQVpaEAKKVIXEEIQK-LQSLESSSTEFNVTRN 436
                 4566666554..55667777766666666..6778888888888777776666666655411111145666777777777777778888888888877777777666666666655555400334444445544.3445555555555555 PP

  == domain 2    score: 14.7 bits;  conditional E-value: 8.6e-06
   TIGR02397  40 LfsGprGvGKTsiArilAkalNC 62 
                  f Gp GvGKTsi + +AkalN 
  MMETSP1137-20121227|3389_1 496 CFVGPPGVGKTSIGKSIAKALNR 518
                 69********************5 PP

  == domain 3    score: -1.1 bits;  conditional E-value: 0.56
   TIGR02397 189 lkkekikveeeaLeliarkaeGslRDalslldqlislskgkitlekveellglvse...ekllelleailk 256
                 + +ek+++ +  Le  ar+  G   D ++l++ +isl +    ++ v++l   +++   +  l+++++  +
  MMETSP1137-20121227|3389_1 638 ILDEKVEIARRYLEPTARQQMGLSADHMELTQDAISLIRWYCREAGVRNLQKHIEKicrKVALKVVQNSQE 708
                 34678888888888888888888888888888888877765555555554444433000344444444433 PP

>> TIGR02957  SigX4: RNA polymerase sigma-70 factor, TIGR02957 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.0   0.0   0.00011     0.037      57     116 ..     165     221 ..     158     226 .. 0.76
   2 ?    0.2   0.0      0.21        73     165     190 ..     302     327 ..     287     334 .. 0.76
   3 ?   -1.6   0.1      0.77   2.6e+02     128     181 ..     353     405 ..     326     419 .. 0.67

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 0.00011
   TIGR02957  57 rsidkLrsararresYvGpWLPEPllteaadpaesvelkeslslAlLlllerLspleRav 116
                   ++ L +a+a    YvG +LP P++ ++a     ++  +  s+ +L  + rL+p+ R  
  MMETSP1137-20121227|3389_1 165 ALVEALVTAKASSHPYVGVFLPKPEFSDQASL---TDPTQVHSVGTLASIARLAPTPRGL 221
                 45789*********************994443...3444455778899999999988865 PP

  == domain 2    score: 0.2 bits;  conditional E-value: 0.21
   TIGR02957 165 eerellerFlealktgdlegllelLa 190
                 +e+  l+ F  al t d+++l+e+L 
  MMETSP1137-20121227|3389_1 302 HEAGKLADFGAALTTADAQSLQEVLG 327
                 45556889****************96 PP

  == domain 3    score: -1.6 bits;  conditional E-value: 0.77
   TIGR02957 128 eeiaeivdkseancrqlvsRarrklaekrkraevsaeeerellerFlealktgd 181
                 ++i++ vd + +  ++ +  + ++l++ +k   +++ ++++l+ +F+e ++t +
  MMETSP1137-20121227|3389_1 353 SQISKQVDEKISSNQRRY-LLMEQLKQIKKELGLEKDDKEALVTKFSERIATLQ 405
                 567777765543333222.25567777777788999999999999998877655 PP

>> TIGR01242  26Sp45: 26S proteasome subunit P45 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.2      0.26        88       7      69 ..     372     434 ..     365     443 .. 0.83
   2 !   12.1   0.0   4.8e-05     0.016     156     227 ..     492     571 ..     481     579 .. 0.64

  Alignments for each domain:
  == domain 1    score: -0.1 bits;  conditional E-value: 0.26
   TIGR01242   7 kirkledekkllekekirlereverlrselerlrsppllvavvvevlddervvvksstGpkfv 69 
                  + +l++ kk+l  ek   e  v ++ + +  l++p     v+ e +++ + +  sst  ++ 
  MMETSP1137-20121227|3389_1 372 LMEQLKQIKKELGLEKDDKEALVTKFSERIATLQVPAEAKKVIXEEIQKLQSLESSSTEFNVT 434
                 4678999999999999999999***********************999988888888766655 PP

  == domain 2    score: 12.1 bits;  conditional E-value: 4.8e-05
   TIGR01242 156 pkGvllyGppGtGktllakavaeetnatfirvvgsel..v.......kkyiGeGarlvrevfklakekapsiifideidai 227
                  k + + GppG+Gkt + k++a+  n  f r     l  v       + y+G     + + +k a   a  +++ideid +
  MMETSP1137-20121227|3389_1 492 GKIICFVGPPGVGKTSIGKSIAKALNREFYRFSVGGLtdVaeikghrRTYVGAMPGKLIQCLK-ASGTANPVVLIDEIDKL 571
                 5678889**********************9975433311311111113344433222222222.44556667778888765 PP

>> TIGR03499  FlhF: flagellar biosynthesis protein FlhF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   3.5      0.34   1.1e+02     110     188 ..     334     421 ..     236     433 .. 0.72
   2 !   14.7   0.0   1.5e-05     0.005     196     212 ..     490     506 ..     456     516 .. 0.86
   3 ?   -3.6   0.1       5.3   1.8e+03      47      63 ..     702     716 ..     680     744 .. 0.45

  Alignments for each domain:
  == domain 1    score: 0.4 bits;  conditional E-value: 0.34
   TIGR03499 110 e.......eelrkelkalkellekqlselal..eeedperakllkklleagvseelarelleklkekedaeeareklreaLekklsvk 188
                 +        + + el++l+++++kq++e  +  +++   +++l +  +e g++++  ++l+ k +e+    ++ ++ ++++ ++++  
  MMETSP1137-20121227|3389_1 334 RiektlllLKKELELSKLQSQISKQVDEKISsnQRRYLLMEQLKQIKKELGLEKDDKEALVTKFSERIATLQVPAEAKKVIXEEIQKL 421
                 1444454545566888899999999987655766667777777777788999999999999999998888888888888888888554 PP

  == domain 2    score: 14.7 bits;  conditional E-value: 1.5e-05
   TIGR03499 196 ekggviaLvGptGvGKT 212
                 ++g++i +vGp+GvGKT
  MMETSP1137-20121227|3389_1 490 TQGKIICFVGPPGVGKT 506
                 799*************9 PP

  == domain 3    score: -3.6 bits;  conditional E-value: 5.3
   TIGR03499  47 vvaaideeesasaasee 63 
                 vv   +e+   + a e+
  MMETSP1137-20121227|3389_1 702 VVQNSQERD--EVAPEA 716
                 222222222..222222 PP

>> TIGR00390  hslU: ATP-dependent protease HslVU, ATPase subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   3.6      0.19        65     102     227 ..     336     467 ..     330     486 .. 0.74
   2 ?   10.3   0.0   0.00015     0.051      48      86 ..     493     531 ..     485     542 .. 0.87
   3 ?   -1.3   0.0      0.49   1.7e+02     248     260 ..     560     572 ..     549     580 .. 0.82

  Alignments for each domain:
  == domain 1    score: 0.1 bits;  conditional E-value: 0.19
   TIGR00390 102 daavklvkee.kiekvkekaeeaaeeriv....dkllppaknqfgeee..ekdeeesakealrkklreGelddkeieievsekspseieilappele.evdenlqsllqnllsdkkkkrklkvkeakkvlieee 227
                 ++++ l+k+e +++k+++++ ++++e+i     + ll  + +q ++e   ekd++e+   ++ ++++  ++  +  ++  +e +  ++++l ++  e +v+ n  + l+ l      k ++k+k a+kvl e+ 
  MMETSP1137-20121227|3389_1 336 EKTLLLLKKElELSKLQSQISKQVDEKISsnqrRYLLMEQLKQIKKELglEKDDKEALVTKFSERIATLQVPAEAKKVIXEEIQ--KLQSLESSSTEfNVTRNYLDWLTALPWGIYSKENFKLKRAQKVLAEDH 467
                 5566666655378999999999999999733224577777777554446889999999999****9998887666555444444..4445544444337999999999999889999999********999875 PP

  == domain 2    score: 10.3 bits;  conditional E-value: 0.00015
   TIGR00390  48 knilmiGstGvGkteiarrlaklaeaPfikveatkftev 86 
                 k i  +G+ GvGkt i + +ak  +  f +      t+v
  MMETSP1137-20121227|3389_1 493 KIICFVGPPGVGKTSIGKSIAKALNREFYRFSVGGLTDV 531
                 77999********************99988877777766 PP

  == domain 3    score: -1.3 bits;  conditional E-value: 0.49
   TIGR00390 248 sGiifideidkia 260
                 + +++ideidk+ 
  MMETSP1137-20121227|3389_1 560 NPVVLIDEIDKLG 572
                 569********86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (749 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       321  (0.0782545); expected 82.0 (0.02)
Passed bias filter:                      162  (0.0394929); expected 82.0 (0.02)
Passed Vit filter:                        45  (0.0109703); expected 4.1 (0.001)
Passed Fwd filter:                        12  (0.0029254); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.74u 0.20s 00:00:00.94 Elapsed: 00:00:00.67
# Mc/sec: 1475.52
//
Query:       MMETSP1137-20121227|3391_1  [L=647]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     5e-249  825.3   0.0   5.9e-249  825.1   0.0    1.0  1  TIGR03719 ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family
    6.8e-54  181.5   4.1    4.4e-26   89.7   0.3    4.1  3  TIGR02857 CydD: thiol reductant ABC exporter, CydD subunit
    3.4e-53  178.3   4.9    3.9e-16   56.9   0.1    4.1  4  TIGR03873 F420-0_ABC_ATP: proposed F420-0 ABC transporter, ATP-binding protein
      5e-48  161.8   7.4    7.4e-15   52.4   0.1    4.2  4  TIGR02868 CydC: thiol reductant ABC exporter, CydC subunit
    8.7e-47  157.1   0.0    4.9e-14   50.1   0.0    5.1  4  TIGR03608 L_ocin_972_ABC: putative bacteriocin export ABC transporter, lactococcin 972 group
    1.6e-44  150.1   0.8    1.8e-13   47.5   0.0    4.2  4  TIGR03375 type_I_sec_LssB: type I secretion system ATPase
    1.2e-43  146.9   2.4    2.5e-20   70.8   0.1    4.3  3  TIGR01189 ccmA: heme ABC exporter, ATP-binding protein CcmA
    3.9e-43  145.4   0.1    4.1e-14   50.6   0.0    4.2  4  TIGR02673 FtsE: cell division ATP-binding protein FtsE
    6.5e-42  141.4   0.0    9.3e-19   65.6   0.0    3.9  3  TIGR02315 ABC_phnC: phosphonate ABC transporter, ATP-binding protein
    1.2e-41  140.4   0.4    1.8e-11   41.8   0.0    4.2  4  TIGR02211 LolD_lipo_ex: lipoprotein releasing system, ATP-binding protein
    4.2e-41  138.8   2.2    2.5e-21   74.1   0.1    3.6  3  TIGR03864 PQQ_ABC_ATP: ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system
    4.2e-41  138.9   2.9    4.3e-20   70.1   0.2    4.1  3  TIGR00968 3a0106s01: sulfate ABC transporter, ATP-binding protein
    1.4e-40  136.6   4.1    2.6e-19   67.3   0.3    4.1  2  TIGR01166 cbiO: cobalt ABC transporter, ATP-binding protein
    2.7e-40  136.2   0.7    9.9e-17   59.2   0.1    4.1  3  TIGR00960 3a0501s02: type II secretory pathway family protein
    3.6e-40  136.1   0.8    1.2e-19   68.6   0.1    3.9  3  TIGR03265 PhnT2: putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein
    1.5e-39  133.8   0.5    3.5e-10   36.8   0.0    4.3  4  TIGR01842 type_I_sec_PrtD: type I secretion system ATPase
    1.6e-39  133.8   2.9    8.5e-21   72.3   0.2    3.9  2  TIGR01188 drrA: daunorubicin resistance ABC transporter, ATP-binding protein
    3.7e-38  129.3   0.4    2.9e-12   43.7   0.0    4.1  4  TIGR03797 NHLM_micro_ABC2: NHLM bacteriocin system ABC transporter, ATP-binding protein
    3.2e-37  126.1   1.0      6e-13   46.7   0.0    4.1  4  TIGR02982 heterocyst_DevA: ABC exporter ATP-binding subunit, DevA family
    3.7e-36  122.7   0.0    2.8e-19   67.5   0.0    3.7  3  TIGR03740 galliderm_ABC: lantibiotic protection ABC transporter, ATP-binding subunit
    4.7e-36  122.1   0.3      5e-16   55.9   0.0    4.0  3  TIGR03796 NHLM_micro_ABC1: NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein
    9.5e-35  118.3   0.0    1.4e-12   45.5   0.0    4.2  4  TIGR03522 GldA_ABC_ATP: gliding motility-associated ABC transporter ATP-binding subunit GldA
    2.5e-34  116.8   1.5      4e-12   44.1   0.1    4.6  3  TIGR03411 urea_trans_UrtD: urea ABC transporter, ATP-binding protein UrtD
    3.1e-34  116.2   0.0      8e-18   62.5   0.0    4.0  3  TIGR03410 urea_trans_UrtE: urea ABC transporter, ATP-binding protein UrtE
    5.2e-34  115.5   0.0    1.4e-10   38.8   0.0    4.2  4  TIGR00972 3a0107s01c2: phosphate ABC transporter, ATP-binding protein
    3.1e-33  113.2   0.2      8e-16   56.1   0.0    3.2  2  TIGR02769 nickel_nikE: nickel import ATP-binding protein NikE
    7.7e-33  111.8   1.6    1.1e-17   61.9   0.2    3.7  3  TIGR03258 PhnT: 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT
    9.8e-33  111.4   1.2    1.7e-14   51.2   0.3    3.9  3  TIGR02204 MsbA_rel: ABC transporter, permease/ATP-binding protein
    1.5e-32  110.6   0.4    1.1e-12   44.9   0.3    3.9  3  TIGR01846 type_I_sec_HlyB: type I secretion system ATPase
    2.2e-32  110.3   0.3    2.1e-15   54.7   0.0    3.6  3  TIGR01184 ntrCD: nitrate ABC transporter, ATP-binding proteins C and D
    4.7e-32  109.4   2.5    3.2e-12   44.2   0.0    4.5  5  TIGR02142 modC_ABC: molybdate ABC transporter, ATP-binding protein
    6.6e-32  108.5   6.0    2.4e-17   60.7   0.4    4.0  2  TIGR01288 nodI: nodulation ABC transporter NodI
    7.2e-32  108.4   0.0    1.8e-08   31.2   0.0    4.1  4  TIGR03269 met_CoM_red_A2: methyl coenzyme M reductase system, component A2
    2.1e-31  106.7   0.8    1.3e-12   44.6   0.2    4.1  3  TIGR00958 3a01208: antigen peptide transporter 2
    2.4e-31  107.0   3.9    1.1e-08   32.9   0.0    4.2  4  TIGR03771 anch_rpt_ABC: anchored repeat-type ABC transporter, ATP-binding subunit
    9.2e-31  104.9   0.4    1.7e-08   32.0   0.0    4.2  4  TIGR02324 CP_lyasePhnL: phosphonate C-P lyase system protein PhnL
    2.4e-30  103.4   1.6      8e-08   29.0   0.0    4.0  4  TIGR02203 MsbA_lipidA: lipid A export permease/ATP-binding protein MsbA
    9.2e-30  101.6   0.0    2.5e-08   31.2   0.0    4.1  4  TIGR02314 ABC_MetN: D-methionine ABC transporter, ATP-binding protein
    1.2e-29  101.2   2.5    4.7e-10   36.5   0.0    4.2  4  TIGR00955 3a01204: pigment precursor permease
    2.9e-28   96.6   0.1    2.2e-07   28.2   0.0    4.1  4  TIGR03005 ectoine_ehuA: ectoine/hydroxyectoine ABC transporter, ATP-binding protein EhuA
    5.5e-28   95.8   0.1    9.8e-08   29.5   0.0    4.2  4  TIGR01978 sufC: FeS assembly ATPase SufC
    9.4e-28   95.0   2.6    5.1e-12   43.3   0.4    3.9  3  TIGR01187 potA: polyamine ABC transporter, ATP-binding protein
    1.2e-27   94.8   1.2    6.1e-12   43.4   0.1    4.1  3  TIGR01277 thiQ: thiamine ABC transporter, ATP-binding protein
    2.3e-27   93.5   0.1    1.8e-06   24.5   0.0    4.1  4  TIGR02633 xylG: D-xylose ABC transporter, ATP-binding protein
      8e-26   88.6   0.0    1.5e-06   24.8   0.0    4.2  4  TIGR01193 bacteriocin_ABC: ABC-type bacteriocin transporter
    1.4e-25   87.7   0.0    2.4e-13   47.2   0.0    3.7  3  TIGR00954 3a01203: peroxysomal long chain fatty acyl transporter
    2.4e-23   80.7   0.1    1.4e-08   32.4   0.0    4.0  3  TIGR02323 CP_lyasePhnK: phosphonate C-P lyase system protein PhnK
    4.9e-23   79.6   0.4    7.3e-07   26.4   0.0    4.2  4  TIGR01186 proV: glycine betaine/L-proline transport ATP binding subunit
    1.4e-22   77.9   0.3    6.5e-14   49.3   0.1    3.8  3  TIGR01192 chvA: glucan exporter ATP-binding protein
    1.4e-20   70.2   0.2    2.1e-05   20.0   0.0    4.0  4  TIGR01271 CFTR_protein: cystic fibrosis transmembrane conductor regulator (CFTR)
    1.2e-19   68.4   3.7    2.5e-07   27.8   0.0    4.2  4  TIGR03415 ABC_choXWV_ATP: choline ABC transporter, ATP-binding protein
    4.6e-19   64.7   0.1    4.4e-09   31.6   0.0    3.1  2  TIGR01257 rim_protein: rim ABC transporter
    1.3e-18   65.1   0.5    7.4e-06   23.3   0.0    4.3  4  TIGR02770 nickel_nikD: nickel import ATP-binding protein NikD
    1.3e-18   63.9   0.0    1.2e-05   21.0   0.0    4.0  4  TIGR00956 3a01205: pleiotropic drug resistance family protein
      5e-18   61.8   0.0    2.8e-10   36.1   0.0    3.1  3  TIGR00957 MRP_assoc_pro: multi drug resistance-associated protein (MRP)
    9.7e-17   58.5   0.1    5.6e-09   32.9   0.0    3.1  3  TIGR01194 cyc_pep_trnsptr: cyclic peptide transporter
    1.8e-12   44.1   0.4    0.00031   16.9   0.0    4.0  4  TIGR00630 uvra: excinuclease ABC subunit A
    3.7e-08   31.1   0.2     0.0052   14.4   0.0    2.4  2  TIGR00231 small_GTP: small GTP-binding protein domain
    8.2e-05   18.3   2.6       0.27    6.6   0.0    3.4  4  TIGR00606 rad50: rad50
    0.00021   18.2   0.2      0.018   11.9   0.0    2.3  2  TIGR02729 Obg_CgtA: Obg family GTPase CgtA
    0.00025   18.1   3.7       0.11    9.5   0.1    2.7  3  TIGR00750 lao: LAO/AO transport system ATPase
     0.0013   15.5   0.7       0.16    8.6   0.1    2.3  2  TIGR03496 FliI_clade1: flagellar protein export ATPase FliI
     0.0016   15.0   0.2        0.3    7.5   0.0    2.2  2  TIGR02546 III_secr_ATP: type III secretion apparatus H+-transporting two-sector ATPase
     0.0039   13.7   0.4       0.68    6.3   0.0    2.2  2  TIGR03498 FliI_clade3: flagellar protein export ATPase FliI
     0.0046   14.0   0.0       0.19    8.7   0.0    2.1  2  TIGR03680 eif2g_arch: translation initiation factor 2, gamma subunit
     0.0051   13.6   0.4       0.43    7.3   0.1    2.2  2  TIGR03497 FliI_clade2: flagellar protein export ATPase FliI
     0.0066   13.2   0.1       0.94    6.1   0.0    2.3  2  TIGR03156 GTP_HflX: GTP-binding protein HflX
      0.008   14.3   0.4       0.64    8.1   0.0    2.3  2  TIGR02528 EutP: ethanolamine utilization protein, EutP
     0.0092   13.5   2.1       0.17    9.4   0.1    2.9  3  TIGR02322 phosphon_PhnN: phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN
     0.0094   13.2   1.1        1.2    6.3   0.1    2.3  2  TIGR00436 era: GTP-binding protein Era
  ------ inclusion threshold ------
      0.016   11.5   2.0       0.55    6.4   0.1    2.5  2  TIGR03185 DNA_S_dndD: DNA sulfur modification protein DndD
      0.017   12.8   2.6       0.93    7.1   0.0    2.3  2  TIGR00152 TIGR00152: dephospho-CoA kinase
      0.021   10.8   1.5      0.081    8.9   0.0    2.1  2  TIGR00929 VirB4_CagE: type IV secretion/conjugal transfer ATPase, VirB4 family
      0.047   10.7   0.9       0.75    6.7   0.0    2.7  2  TIGR00611 recf: DNA replication and repair protein RecF
       0.16    7.5   7.8      0.017   10.6   0.2    2.8  3  TIGR02168 SMC_prok_B: chromosome segregation protein SMC


Domain annotation for each model (and alignments):
>> TIGR03719  ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  825.1   0.0  1.1e-250  5.9e-249       2     542 ..      95     638 ..      94     646 .. 0.98

  Alignments for each domain:
  == domain 1    score: 825.1 bits;  conditional E-value: 1.1e-250
   TIGR03719   2 qyiytmkrvskvvpp.kkeilkdislsffpgakiGvlGlnGaGkstllkimaGvdkefeGealaaegikvGyleqePkldeektvrenveegvaeikealdrfeeisaklaee..dadfdklleeqaklqekidaadawdldskleiamdalrlpeedakveklsGGekrrvalcrlllekPdlllldePtnhldaesvaWlekflkeykGtvvavthdryfldnvaeWileldrGegipykgnysswleqkekrleqeekeeaarkkalkkeleWvrsspkarqakskarlaryeelasee.sekkeetaeivippgerlGdkvievenlskafgdklliddlsfklpkggivGviGpnGaGkstlfklitgkekpdsGelkiGetvklayvdqsrdalddnktvweeisdGldllklgkvevnsrayvgrfnfkGadqqkkvgelsGGernrvhlakllkeggnvllldePtndldvetlraleeallefaGcavvishdrwfldriathilafegdskveffeGnyeeyeedkkkrlGedaa 542
                  +i+t+  +sk++p+ ++++lkdi+l f+pgakiG++GlnGaGkstllkimaGvd+efeG a++++g+++Gyl+qeP+l+  +tv+e +  +va+ k++l++fee+sak++e+  d+ +++ l+e +++q++i+++d w+ld+ ++ am+alr+p+ da+v+ lsGGekrrval+rllle+PdlllldePtnhlda+svaWl+ fl+++kGtvva+thdryfl+  ++Wilel+rGeg+p++gnys+wl +k+++l+ e+k e++ +k l++eleWvrsspkarq+kskarl+ryee++++  +e+ +++a+i+ippg+rlG++vie+++lsk+f+ ++l+dd+sf++p+g+ivG++GpnGaGk+tl++++tg+e pdsGel  G+tvkl  vdqsr++l ++k+v+eei+dG+d ++lg+ +v+ ray ++f+fk  dqqk+v +lsGGernrv+lak+l+ +gnvllldePtndldv+t+r+leeallefaGca+v+shdr+fldr+athila egd+++ f+eGny++ye+d+ kr+G+da 
  MMETSP1137-20121227|3391_1  95 SFIFTILGLSKTLPDgSRQLLKDINLCFYPGAKIGLVGLNGAGKSTLLKIMAGVDTEFEGTAKPQSGATIGYLPQEPELE-GRTVQESIDLAVASSKALLAQFEELSAKVCEPmdDDAMEQALAELGRVQDEIESKDLWELDRVVSRAMEALRCPPGDAEVAVLSGGEKRRVALARLLLESPDLLLLDEPTNHLDAQSVAWLQTFLQDFKGTVVAITHDRYFLETTCKWILELERGEGVPFEGNYSEWLAKKAAKLAAEKKGEENMAKMLEAELEWVRSSPKARQTKSKARLRRYEEMLQAPpRESLAHSAQIYIPPGPRLGSQVIEASHLSKGFNGRTLLDDVSFSIPPGAIVGIVGPNGAGKTTLLRMLTGEEAPDSGELVKGQTVKLVVVDQSRESLANDKSVFEEITDGADEITLGTSTVKGRAYTSWFGFKAGDQQKRVANLSGGERNRVQLAKVLRMHGNVLLLDEPTNDLDVHTMRSLEEALLEFAGCAIVVSHDRFFLDRLATHILAAEGDGQWYFMEGNYQDYEDDRVKRFGKDAF 638
                 69**********98648**************************************************************7.589****************************9977889**********************************************************************************************************************************************************************************97665166678899***************************************************************************************************************************************************************************************************************************************985 PP

>> TIGR02857  CydD: thiol reductant ABC exporter, CydD subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.7   0.3     8e-28   4.4e-26     306     521 ..      80     317 ..      62     325 .. 0.78
   2 !   42.9   0.0   1.2e-13   6.8e-12     320     395 ..     406     490 ..     350     499 .. 0.79
   3 !   43.5   0.0   8.2e-14   4.5e-12     455     520 ..     536     599 ..     521     607 .. 0.88

  Alignments for each domain:
  == domain 1    score: 89.7 bits;  conditional E-value: 8e-28
   TIGR02857 306 qpeaekapltaaass........slelenvsvayegrk.palkevsltvepgelvalvGaSGaGKstllklllgfvepteGailvngaelaeldadswrkqiawvpQkPllfegtvaenirlarkdaseae............................vkealerag...ldelvkalpqgleteiGe.rgagLSgGqrqRlaLArallrdapllllDEPtahLDaeteaevlealrelaegrtvllvaHrlalae 521
                 ++++++++      s          ++ ++s + ++ + + lk+++l + pg +++lvG  GaGKstllk+++g+ +  eG+ +            +   +i+++pQ+P l   tv+e i la +  ++                              v++ +e  +   ld++v+ + + l  + G+ + a LSgG+++R+aLAr+ll+  +llllDEPt hLDa++ a ++  l+++  + tv+ ++H++  +e
  MMETSP1137-20121227|3391_1  80 KQSQSRQS------SlddstksfIFTILGLSKTLPDGSrQLLKDINLCFYPGAKIGLVGLNGAGKSTLLKIMAGVDTEFEGTAK-----------PQSGATIGYLPQEPELEGRTVQESIDLAVASSKALLaqfeelsakvcepmdddameqalaelgrVQDEIESKDlweLDRVVSRAMEALRCPPGDaEVAVLSGGEKRRVALARLLLESPDLLLLDEPTNHLDAQSVAWLQTFLQDF--KGTVVAITHDRYFLE 317
                 22222222......1222233346778899999977766***********************************9986666655...........234578*****************99988766655445588899999********999999988877666665511155566677777777777625689*******************************************996..458999***997766 PP

  == domain 2    score: 42.9 bits;  conditional E-value: 1.2e-13
   TIGR02857 320 s...........slelenvsvayegrkpalkevsltvepgelvalvGaSGaGKstllklllgfvepteGailvngaelaeldadswr 395
                 +            +e++ +s  ++gr+  l++vs++++pg +v++vG+ GaGK+tll++l g   p++G+++ +g++++ +  d+ r
  MMETSP1137-20121227|3391_1 406 IyippgprlgsqVIEASHLSKGFNGRT-LLDDVSFSIPPGAIVGIVGPNGAGKTTLLRMLTGEEAPDSGELV-KGQTVKLVVVDQSR 490
                 133444456666899************.******************************************86.77777665555555 PP

  == domain 3    score: 43.5 bits;  conditional E-value: 8.2e-14
   TIGR02857 455 rgagLSgGqrqRlaLArallrdapllllDEPtahLDaeteaevlealrelaegrtvllvaHrlala 520
                 r a+LSgG+r R+ LA++l  + ++lllDEPt  LD +t   ++eal e+a     ++v+H++  +
  MMETSP1137-20121227|3391_1 536 RVANLSGGERNRVQLAKVLRMHGNVLLLDEPTNDLDVHTMRSLEEALLEFAGC--AIVVSHDRFFL 599
                 5679*********************************************8865..57789987655 PP

>> TIGR03873  F420-0_ABC_ATP: proposed F420-0 ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.8   0.0   1.3e-09   7.3e-08      11      62 ..     109     160 ..     101     197 .. 0.90
   2 !   54.3   0.0   4.3e-17   2.3e-15     132     214 ..     251     330 ..     225     348 .. 0.87
   3 !   56.9   0.1   7.2e-18   3.9e-16       3     100 ..     420     520 ..     418     539 .. 0.75
   4 !   37.0   0.2   8.3e-12   4.5e-10     133     198 ..     535     597 ..     529     612 .. 0.77

  Alignments for each domain:
  == domain 1    score: 29.8 bits;  conditional E-value: 1.3e-09
   TIGR03873  11 aggrlivddvdvtaPaGaltgllGPnGsGkstllrllaGllapdaGevdlag 62 
                  g+r +++d+++ + +Ga  gl+G nG+Gkstll+++aG+ +  +G+ ++++
  MMETSP1137-20121227|3391_1 109 DGSRQLLKDINLCFYPGAKIGLVGLNGAGKSTLLKIMAGVDTEFEGTAKPQS 160
                 699*************************************999999987654 PP

  == domain 2    score: 54.3 bits;  conditional E-value: 4.3e-17
   TIGR03873 132 drdlstlsGGerqrvhlaralaqePklllldePtnhldvsaqlellalvrelaaegvtvvvalhdlnlaasvcdhvvvldgGr 214
                 d ++  lsGGe++rv lar l   P lllldePtnhld ++   l +++++    + tvv+  hd  +  + c  ++ l+ G 
  MMETSP1137-20121227|3391_1 251 DAEVAVLSGGEKRRVALARLLLESPDLLLLDEPTNHLDAQSVAWLQTFLQDF---KGTVVAITHDRYFLETTCKWILELERGE 330
                 667899********************************99888888888888...999******************9999986 PP

  == domain 3    score: 56.9 bits;  conditional E-value: 7.2e-18
   TIGR03873   3 rlsrvsvraggrlivddvdvtaPaGaltgllGPnGsGkstllrllaGllapdaGev.dlagad..lkalsrrararrvalveqdsdaevplsvrdvvalGr 100
                 ++s++s   +gr+++ddv  + P+Ga+ g++GPnG+Gk+tllr+l+G +apd Ge+ + +++   +   sr + a   ++ e  +d + +++     + Gr
  MMETSP1137-20121227|3391_1 420 EASHLSKGFNGRTLLDDVSFSIPPGAIVGIVGPNGAGKTTLLRMLTGEEAPDSGELvKGQTVKlvVVDQSRESLANDKSVFEEITDGADEITLGTSTVKGR 520
                 7899**************************************************98333333432344455556666667776666666666666666666 PP

  == domain 4    score: 37.0 bits;  conditional E-value: 8.3e-12
   TIGR03873 133 rdlstlsGGerqrvhlaralaqePklllldePtnhldvsaqlellalvrelaaegvtvvvalhdln 198
                 + +  lsGGer rv+la+ l  + ++llldePtn ldv++  +l +++ e a      +v  hd  
  MMETSP1137-20121227|3391_1 535 KRVANLSGGERNRVQLAKVLRMHGNVLLLDEPTNDLDVHTMRSLEEALLEFA---GCAIVVSHDRF 597
                 56789*********************************98777777777662...23344446655 PP

>> TIGR02868  CydC: thiol reductant ABC exporter, CydC subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.8   0.0   4.6e-10   2.5e-08     316     432 ..      77     185 ..      65     220 .. 0.77
   2 !   52.4   0.1   1.3e-16   7.4e-15     470     529 ..     255     312 ..     243     313 .. 0.86
   3 !   41.6   0.0   2.5e-13   1.4e-11     297     400 ..     378     482 ..     365     518 .. 0.80
   4 !   38.7   0.1   1.9e-12     1e-10     468     517 ..     536     585 ..     530     596 .. 0.87

  Alignments for each domain:
  == domain 1    score: 30.8 bits;  conditional E-value: 4.6e-10
   TIGR02868 316 evaeasapaaeaaas..ekptlelrdlsvsypgaee.vlkgvsldlepGervavvGasGaGKstLlallaglldplkGevtldgvsvaslsesevrrvvsvlaqdaHlFdttvreNlrla 432
                 ++a++s+ +++ + +  +++  ++ +ls   p++++  lk+++l   pG+++ +vG  GaGKstLl+++ag+    +G+   ++            +++ +l+q++ l   tv+e + la
  MMETSP1137-20121227|3391_1  77 QQAKQSQSRQSSLDDstKSFIFTILGLSKTLPDGSRqLLKDINLCFYPGAKIGLVGLNGAGKSTLLKIMAGVDTEFEGTAKPQS-----------GATIGYLPQEPELEGRTVQESIDLA 185
                 2333333333333335578899999*******99999**********************************9877777765322...........3567777777777777777766555 PP

  == domain 2    score: 52.4 bits;  conditional E-value: 1.3e-16
   TIGR02868 470 arlSGGerqRlalARaLladapvllLDEPtehLDaeteeelledLlaaeegrtvvlvthr 529
                 a lSGGe++R+alAR Ll+  ++llLDEPt hLDa+  + l + L +  +  tvv +th+
  MMETSP1137-20121227|3391_1 255 AVLSGGEKRRVALARLLLESPDLLLLDEPTNHLDAQSVAWLQTFL-QDFK-GTVVAITHD 312
                 78*********************************9887665555.4444.479999997 PP

  == domain 3    score: 41.6 bits;  conditional E-value: 2.5e-13
   TIGR02868 297 ltrvraaaeRieevldakvevaeasapaaeaaas....ekptlelrdlsvsypgaeevlkgvsldlepGervavvGasGaGKstLlallaglldplkGevtldgvsva 400
                  t+++a ++R ee+l+a+ +++  ++ a+   ++    ++  +e+++ls +++g    l++vs+ ++pG+ v +vG+ GaGK+tLl +l+g  +p++Ge++ +g  v+
  MMETSP1137-20121227|3391_1 378 QTKSKARLRRYEEMLQAP-PRESLAHSAQIYIPPgprlGSQVIEASHLSKGFNGRT-LLDDVSFSIPPGAIVGIVGPNGAGKTTLLRMLTGEEAPDSGELV-KGQTVK 482
                 456777788999999999.5555555555444446777788899999999999985.6*****************************************97.554443 PP

  == domain 4    score: 38.7 bits;  conditional E-value: 1.9e-12
   TIGR02868 468 ggarlSGGerqRlalARaLladapvllLDEPtehLDaeteeelledLlaa 517
                 + a lSGGer R+ lA++L  + +vllLDEPt +LD++t ++l e+Ll+ 
  MMETSP1137-20121227|3391_1 536 RVANLSGGERNRVQLAKVLRMHGNVLLLDEPTNDLDVHTMRSLEEALLEF 585
                 6689***************************************9999965 PP

>> TIGR03608  L_ocin_972_ABC: putative bacteriocin export ABC transporter, lactococcin 972 group
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.3   0.0   1.8e-08   9.7e-07       9      55 ..     110     156 ..     100     220 .. 0.80
   2 !   50.1   0.0     9e-16   4.9e-14     131     200 ..     253     319 ..     228     326 .. 0.87
   3 !   37.5   0.0   6.6e-12   3.6e-10       3      71 ..     423     491 ..     421     500 .. 0.84
   4 !   35.4   0.0   2.9e-11   1.6e-09     126     197 ..     531     599 ..     518     607 .. 0.85

  Alignments for each domain:
  == domain 1    score: 26.3 bits;  conditional E-value: 1.8e-08
   TIGR03608   9 kdkeilkklslkiekGelvaivGesGsGKstlLnilgllekkdsgkv 55 
                 +++++lk+++l +  G  + +vG  G+GKstlL i++ ++++ +g+ 
  MMETSP1137-20121227|3391_1 110 GSRQLLKDINLCFYPGAKIGLVGLNGAGKSTLLKIMAGVDTEFEGTA 156
                 5789***********************************99877764 PP

  == domain 2    score: 50.1 bits;  conditional E-value: 9e-16
   TIGR03608 131 kiyelsgGekqRvalarillkeselilADEPtgsLDkknreevlellkelkeegktiiivtHdpevaeka 200
                 ++  lsgGek Rvalar+ll +++l+l DEPt  LD+++ + + ++l++ k    t++ +tHd +  e++
  MMETSP1137-20121227|3391_1 253 EVAVLSGGEKRRVALARLLLESPDLLLLDEPTNHLDAQSVAWLQTFLQDFK---GTVVAITHDRYFLETT 319
                 5778**********************************9999998888876...5899*****9977653 PP

  == domain 3    score: 37.5 bits;  conditional E-value: 6.6e-12
   TIGR03608   3 niskkfkdkeilkklslkiekGelvaivGesGsGKstlLnilgllekkdsgkvilegkekaklkskkas 71 
                 ++sk f+ +++l+++s++i  G +v ivG  G+GK+tlL +l+  e +dsg+++  ++ k  + +++ +
  MMETSP1137-20121227|3391_1 423 HLSKGFNGRTLLDDVSFSIPPGAIVGIVGPNGAGKTTLLRMLTGEEAPDSGELVKGQTVKLVVVDQSRE 491
                 799*************************************************97665555555555554 PP

  == domain 4    score: 35.4 bits;  conditional E-value: 2.9e-11
   TIGR03608 126 kklkkkiyelsgGekqRvalarillkeselilADEPtgsLDkknreevlellkelkeegktiiivtHdpeva 197
                  +++k++ +lsgGe+ Rv la++l  + +++l DEPt  LD ++   + e l e +      i+v Hd    
  MMETSP1137-20121227|3391_1 531 GDQQKRVANLSGGERNRVQLAKVLRMHGNVLLLDEPTNDLDVHTMRSLEEALLEFA---GCAIVVSHDRFFL 599
                 578999*************************************9999998888775...4567888887655 PP

>> TIGR03375  type_I_sec_LssB: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.6   0.0   8.3e-10   4.5e-08     471     523 ..     103     155 ..      68     203 .. 0.81
   2 !   47.5   0.0   3.4e-15   1.8e-13     603     668 ..     256     319 ..     235     344 .. 0.89
   3 !   34.6   0.0   2.6e-11   1.4e-09     478     525 ..     429     476 ..     375     494 .. 0.76
   4 !   33.5   0.0   5.6e-11   3.1e-09     600     666 ..     536     600 ..     531     613 .. 0.83

  Alignments for each domain:
  == domain 1    score: 29.6 bits;  conditional E-value: 8.3e-10
   TIGR03375 471 vsfkYpeeekaaLknvslkikpGekvaiiGriGsGKstllklllglyepteGs 523
                 +s + p+ +++ Lk+++l   pG k++++G +G+GKstllk+++g+ +  eG+
  MMETSP1137-20121227|3391_1 103 LSKTLPDGSRQLLKDINLCFYPGAKIGLVGLNGAGKSTLLKIMAGVDTEFEGT 155
                 555668889999*********************************98887775 PP

  == domain 2    score: 47.5 bits;  conditional E-value: 3.4e-15
   TIGR03375 603 sLSgGQrqavalaRallkdppillLDEPtsalDnsseekllerLkelladkTlvlvtHrtslLelv 668
                  LSgG ++ valaR+ll++p++llLDEPt++lD++s + l + L+++  + T+v +tH   +Le  
  MMETSP1137-20121227|3391_1 256 VLSGGEKRRVALARLLLESPDLLLLDEPTNHLDAQSVAWLQTFLQDF--KGTVVAITHDRYFLETT 319
                 69**********************************99999999998..57*******99999865 PP

  == domain 3    score: 34.6 bits;  conditional E-value: 2.6e-11
   TIGR03375 478 eekaaLknvslkikpGekvaiiGriGsGKstllklllglyepteGsvl 525
                 + ++ L++vs++i pG  v+i+G +G+GK+tll++l+g  +p++G+++
  MMETSP1137-20121227|3391_1 429 NGRTLLDDVSFSIPPGAIVGIVGPNGAGKTTLLRMLTGEEAPDSGELV 476
                 456789***************************************975 PP

  == domain 4    score: 33.5 bits;  conditional E-value: 5.6e-11
   TIGR03375 600 rGesLSgGQrqavalaRallkdppillLDEPtsalDnsseekllerLkelladkTlvlvtHrtslLe 666
                 r ++LSgG r  v la++l ++ ++llLDEPt+ lD ++ ++l e+L e++     ++v+H   +L+
  MMETSP1137-20121227|3391_1 536 RVANLSGGERNRVQLAKVLRMHGNVLLLDEPTNDLDVHTMRSLEEALLEFAG--CAIVVSHDRFFLD 600
                 5679****************************************99998865..4577777766665 PP

>> TIGR01189  ccmA: heme ABC exporter, ATP-binding protein CcmA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.6   0.0   3.3e-08   1.8e-06      11      60 ..     110     159 ..     105     196 .. 0.92
   2 !   45.0   0.0   3.7e-14     2e-12     122     187 ..     251     313 ..     233     324 .. 0.90
   3 !   70.8   0.1   4.6e-22   2.5e-20       3     185 ..     421     594 ..     419     605 .. 0.75

  Alignments for each domain:
  == domain 1    score: 25.6 bits;  conditional E-value: 3.3e-08
   TIGR01189  11 gervlleglsfelaaGealvveGpnGiGKttLLRilaGLlkpesGeveln 60 
                 g r+ll+++++ + +G  + ++G nG+GK+tLL+i+aG+ +  +G+ + +
  MMETSP1137-20121227|3391_1 110 GSRQLLKDINLCFYPGAKIGLVGLNGAGKSTLLKIMAGVDTEFEGTAKPQ 159
                 6799***********************************99999987655 PP

  == domain 2    score: 45.0 bits;  conditional E-value: 3.7e-14
   TIGR01189 122 dlpvaqLsAGqkrRlalarLllskaplWiLDEPttalDkegvellaellaaHlargGivllathqd 187
                 d+ va Ls G krR+alarLll++  l +LDEPt  lD+++v+ l++ l++     G+v++ th  
  MMETSP1137-20121227|3391_1 251 DAEVAVLSGGEKRRVALARLLLESPDLLLLDEPTNHLDAQSVAWLQTFLQDF---KGTVVAITHDR 313
                 67899*******************************************9986...68899999875 PP

  == domain 3    score: 70.8 bits;  conditional E-value: 4.6e-22
   TIGR01189   3 aeelaveRgervlleglsfelaaGealvveGpnGiGKttLLRilaGLlkpesGevelndkelaeqrdelaeellylgHldglKaeLsalEnLkfyaallqseqk..tveealekvgLs.gledlpvaqLsAGqkrRlalarLllskaplWiLDEPttalDkegvellaellaaHlargGivllath 185
                 a++l+   ++r+ll ++sf++ +G ++ ++GpnG+GKttLLR+l+G   p+sGe+   ++    + d+          +++l ++ s+ E ++  a+ ++  +   +  + +   g + g ++  va+Ls G + R+ la++l  +  + +LDEPt  lD+++++ l+e+l +     G +++ +h
  MMETSP1137-20121227|3391_1 421 ASHLSKGFNGRTLLDDVSFSIPPGAIVGIVGPNGAGKTTLLRMLTGEEAPDSGELVKGQTVKLVVVDQS---------RESLANDKSVFEEITDGADEITLGTStvKGRAYTSWFGFKaGDQQKRVANLSGGERNRVQLAKVLRMHGNVLLLDEPTNDLDVHTMRSLEEALLEF---AGCAIVVSH 594
                 6667777799********************************************988744433333333.........445555555555555444433322221133445566777625567889*****************************************9988654...466666666 PP

>> TIGR02673  FtsE: cell division ATP-binding protein FtsE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   0.0   9.8e-07   5.4e-05      13      60 ..     110     157 ..      98     169 .. 0.88
   2 !   50.6   0.0   7.5e-16   4.1e-14     133     213 ..     252     329 ..     223     330 .. 0.84
   3 !   37.8   0.0   6.3e-12   3.5e-10       2      66 ..     419     481 ..     418     495 .. 0.89
   4 !   30.9   0.0   7.7e-10   4.2e-08     133     208 ..     535     607 ..     513     612 .. 0.85

  Alignments for each domain:
  == domain 1    score: 20.8 bits;  conditional E-value: 9.8e-07
   TIGR02673  13 agveaLkdvslkiekgeflfltGasGaGkttllklllgaekpsrGeve 60 
                 ++ + Lkd++l + +g  + l+G  GaGk+tllk++ g+++  +G+ +
  MMETSP1137-20121227|3391_1 110 GSRQLLKDINLCFYPGAKIGLVGLNGAGKSTLLKIMAGVDTEFEGTAK 157
                 56789**********************************999999765 PP

  == domain 2    score: 50.6 bits;  conditional E-value: 7.5e-16
   TIGR02673 133 alpeelsgGeqqRvaiaRaivnkPelllaDePtGnlDdelserildllkelnkrGttvivathdeelvervkkrvlelekg 213
                 a    lsgGe+ Rva+aR ++++P+lll DePt  lD++  + + + l++++    tv+  thd+ ++e++ k +lele+g
  MMETSP1137-20121227|3391_1 252 AEVAVLSGGEKRRVALARLLLESPDLLLLDEPTNHLDAQSVAWLQTFLQDFK---GTVVAITHDRYFLETTCKWILELERG 329
                 44568*********************************99998888888875...478999*****************998 PP

  == domain 3    score: 37.8 bits;  conditional E-value: 6.3e-12
   TIGR02673   2 ielekvskeyaagveaLkdvslkiekgeflfltGasGaGkttllklllgaekpsrGevevagedv 66 
                 ie +++sk + +g + L+dvs++i +g ++ ++G+ GaGkttll++l+g e p++Ge+ v+g+ v
  MMETSP1137-20121227|3391_1 419 IEASHLSKGF-NGRTLLDDVSFSIPPGAIVGIVGPNGAGKTTLLRMLTGEEAPDSGEL-VKGQTV 481
                 7888999999.67789****************************************96.677766 PP

  == domain 4    score: 30.9 bits;  conditional E-value: 7.7e-10
   TIGR02673 133 alpeelsgGeqqRvaiaRaivnkPelllaDePtGnlDdelserildllkelnkrGttvivathdeelvervkkrvl 208
                 +   +lsgGe+ Rv +a+ +  + ++ll DePt +lD ++ +++ + l e+  +G +++ ++hd+ +++r ++++l
  MMETSP1137-20121227|3391_1 535 KRVANLSGGERNRVQLAKVLRMHGNVLLLDEPTNDLDVHTMRSLEEALLEF--AGCAIV-VSHDRFFLDRLATHIL 607
                 45578***********************************99999988666..577765.5799999999877766 PP

>> TIGR02315  ABC_phnC: phosphonate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.6   0.0   1.7e-20   9.3e-19       4     233 ..     100     341 ..      97     350 .. 0.77
   2 !   39.8   0.0   1.3e-12   7.3e-11       2      67 ..     419     482 ..     418     503 .. 0.85
   3 !   30.1   0.0   1.2e-09   6.6e-08     139     192 ..     533     586 ..     525     633 .. 0.75

  Alignments for each domain:
  == domain 1    score: 65.6 bits;  conditional E-value: 1.7e-20
   TIGR02315   4 venlskvypng.kqalknvnleikkGelvaviGlsGaGkstllrsinrlveissgsil.legkevtklk...kkelrklrkkigm.ifqeynlierltvlenvLsgrlgakstlksl..lglfseedkekAlelLervglaelaakra.......dqLsGGqqqRvaiaRalaqqpklilaDEPiasLDpksskqvmdllkrinkekgitvivnlHqvdlakkyadrivglkage.ivfdgassel 233
                 +  lsk+ p+g +q lk++nl + +G  ++++Gl GaGkstll+ + ++ ++ +g+ +  +g +++ l    + e r+++++i + +    +l+++ + l+  +   +    + + l  lg+ ++e ++k l  L+rv   ++ a r+         LsGG++ Rva+aR l+++p+l+l DEP+  LD +s       l++  ++ + tv+   H+  + +  ++ i+ l+ ge + f+g+ se 
  MMETSP1137-20121227|3391_1 100 ILGLSKTLPDGsRQLLKDINLCFYPGAKIGLVGLNGAGKSTLLKIMAGVDTEFEGTAKpQSGATIGYLPqepELEGRTVQESIDLaVASSKALLAQFEELSAKVCEPMDDDAMEQALaeLGRVQDEIESKDLWELDRVVSRAMEALRCppgdaevAVLSGGEKRRVALARLLLESPDLLLLDEPTNHLDAQSVA----WLQTFLQDFKGTVVAITHDRYFLETTCKWILELERGEgVPFEGNYSEW 341
                 5678899988725789***********************************99996652567888766532256778999999873556677888888888877777766555555411566666667778889****9999998887444322257********************************98765....556666677778888889999999999999999998844577776665 PP

  == domain 2    score: 39.8 bits;  conditional E-value: 1.3e-12
   TIGR02315   2 levenlskvypngkqalknvnleikkGelvaviGlsGaGkstllrsinrlveissgsillegkevt 67 
                 +e ++lsk ++ g++ l++v+++i +G +v+++G+ GaGk+tllr++ + + ++sg+++ +g++v+
  MMETSP1137-20121227|3391_1 419 IEASHLSKGFN-GRTLLDDVSFSIPPGAIVGIVGPNGAGKTTLLRMLTGEEAPDSGELV-KGQTVK 482
                 78889*****9.9*************************************999999864.455554 PP

  == domain 3    score: 30.1 bits;  conditional E-value: 1.2e-09
   TIGR02315 139 aakradqLsGGqqqRvaiaRalaqqpklilaDEPiasLDpksskqvmdllkrin 192
                 ++kr+ +LsGG++ Rv +a+ l  + +++l DEP+  LD ++ + + ++l + +
  MMETSP1137-20121227|3391_1 533 QQKRVANLSGGERNRVQLAKVLRMHGNVLLLDEPTNDLDVHTMRSLEEALLEFA 586
                 679************************************999888777776553 PP

>> TIGR02211  LolD_lipo_ex: lipoprotein releasing system, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.6   0.0     6e-08   3.3e-06      14      61 ..     110     155 ..      97     170 .. 0.86
   2 !   41.8   0.0   3.4e-13   1.8e-11     140     215 ..     255     327 ..     250     331 .. 0.81
   3 !   34.3   0.0   6.8e-11   3.7e-09      17      82 ..     430     495 ..     418     501 .. 0.80
   4 !   34.6   0.0   5.1e-11   2.8e-09     136     212 ..     534     606 ..     516     613 .. 0.88

  Alignments for each domain:
  == domain 1    score: 24.6 bits;  conditional E-value: 6e-08
   TIGR02211  14 gkleievlkgvsleiekgelvaivGssGsGkstllhllggldkptsGe 61 
                 g+   ++lk+++l  + g  +++vG  G+Gkstll +++g+d+  +G+
  MMETSP1137-20121227|3391_1 110 GS--RQLLKDINLCFYPGAKIGLVGLNGAGKSTLLKIMAGVDTEFEGT 155
                 44..468***********************************999887 PP

  == domain 2    score: 41.8 bits;  conditional E-value: 3.4e-13
   TIGR02211 140 selsGGerqrvaiaralvnkPklvladePtgnldkktakkifelllelnkekntallvvthdlelakkl.drvlelk 215
                 + lsGGe++rva+ar l+++P+l+l dePt +ld+++   + ++l+++    + +++ +thd+ + + + +  lel+
  MMETSP1137-20121227|3391_1 255 AVLSGGEKRRVALARLLLESPDLLLLDEPTNHLDAQSVAWLQTFLQDF----KGTVVAITHDRYFLETTcKWILELE 327
                 579*******************************99988777777655....5568999***988775414456665 PP

  == domain 3    score: 34.3 bits;  conditional E-value: 6.8e-11
   TIGR02211  17 eievlkgvsleiekgelvaivGssGsGkstllhllggldkptsGevllkGkelskl.ssneraklrn 82 
                   ++l++vs++i  g +v+ivG  G+Gk+tll +l+g + p sGe+ +kG++++ +  +++r +l n
  MMETSP1137-20121227|3391_1 430 GRTLLDDVSFSIPPGAIVGIVGPNGAGKTTLLRMLTGEEAPDSGEL-VKGQTVKLVvVDQSRESLAN 495
                 45789****************************************6.78998875413445555555 PP

  == domain 4    score: 34.6 bits;  conditional E-value: 5.1e-11
   TIGR02211 136 nkkpselsGGerqrvaiaralvnkPklvladePtgnldkktakkifelllelnkekntallvvthdlelakkldrvl 212
                 +k+ ++lsGGer rv +a+ l  + +++l dePt +ld +t +++ e lle+      + +vv+hd+ + ++l  ++
  MMETSP1137-20121227|3391_1 534 QKRVANLSGGERNRVQLAKVLRMHGNVLLLDEPTNDLDVHTMRSLEEALLEFA----GCAIVVSHDRFFLDRLATHI 606
                 68899**************************************9999888775....466899***99999887665 PP

>> TIGR03864  PQQ_ABC_ATP: ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.0   0.1   1.9e-07     1e-05      12      56 ..     110     154 ..      99     164 .. 0.90
   2 !   39.0   0.0   2.3e-12   1.3e-10     127     176 ..     251     300 ..     239     338 .. 0.90
   3 !   74.1   0.1   4.5e-23   2.5e-21       2     175 ..     419     582 ..     418     593 .. 0.90

  Alignments for each domain:
  == domain 1    score: 23.0 bits;  conditional E-value: 1.9e-07
   TIGR03864  12 gkrralddvsltvakgefvaLLGpnGaGkstLfslltrLyeakeg 56 
                 g+r+ l+d++l   +g+ + L+G+nGaGkstL+++++++ ++ eg
  MMETSP1137-20121227|3391_1 110 GSRQLLKDINLCFYPGAKIGLVGLNGAGKSTLLKIMAGVDTEFEG 154
                 8899********************************998777666 PP

  == domain 2    score: 39.0 bits;  conditional E-value: 2.3e-12
   TIGR03864 127 eekvreLnGGhrrrveiarallhePklLLlDeatvGLDiesraalveevr 176
                 +++v  L+GG++rrv +ar ll +P+lLLlDe+t  LD++s a l++ ++
  MMETSP1137-20121227|3391_1 251 DAEVAVLSGGEKRRVALARLLLESPDLLLLDEPTNHLDAQSVAWLQTFLQ 300
                 567999***********************************988876655 PP

  == domain 3    score: 74.1 bits;  conditional E-value: 4.5e-23
   TIGR03864   2 leveglsfaygkrralddvsltvakgefvaLLGpnGaGkstLfslltrLyeakegeikvaGldlrrapkealarlGvvfqq.stlDldlsveqnlryhaaLhGlsraeaeerieealarlglaeraeekvreLnGGhrrrveiarallhePklLLlDeatvGLDiesraalveev 175
                 +e ++ls+ +  r+ lddvs+++++g++v ++GpnGaGk+tL+ +lt+  + ++ge+ v G+ +         +l vv q+ ++l  d sv + ++  a+   l+ ++++ r  +    ++  ++ +++v +L+GG+r rv +a+ l  + ++LLlDe+t  LD+++ ++l e++
  MMETSP1137-20121227|3391_1 419 IEASHLSKGFNGRTLLDDVSFSIPPGAIVGIVGPNGAGKTTLLRMLTGEEAPDSGEL-VKGQTV---------KLVVVDQSrESLANDKSVFEEITDGADEITLGTSTVKGRAYTSWFGFKAGDQ-QKRVANLSGGERNRVQLAKVLRMHGNVLLLDEPTNDLDVHTMRSLEEAL 582
                 67899********************************************99999997.777765.........46677776269***************************99998888876664.679******************999***************9998887765 PP

>> TIGR00968  3a0106s01: sulfate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.3   0.1   7.5e-08   4.1e-06      11      56 ..     110     155 ..      98     163 .. 0.90
   2 !   39.6   0.0   1.6e-12   8.9e-11     129     192 ..     255     314 ..     239     339 .. 0.87
   3 !   70.1   0.2   7.9e-22   4.3e-20       2     174 ..     420     583 ..     419     611 .. 0.76

  Alignments for each domain:
  == domain 1    score: 24.3 bits;  conditional E-value: 7.5e-08
   TIGR00968  11 GdfqalddvdlevktGslvallGpsGsGkstllrviaGlekpdsGr 56 
                 G+ q l+d++l    G  ++l+G  G+Gkstll+++aG++ + +G+
  MMETSP1137-20121227|3391_1 110 GSRQLLKDINLCFYPGAKIGLVGLNGAGKSTLLKIMAGVDTEFEGT 155
                 8899************************************988776 PP

  == domain 2    score: 39.6 bits;  conditional E-value: 1.6e-12
   TIGR00968 129 sqlsGGqrqrvalaralavepqvllldepfgaldakvrkelrawlrklhdevkvttvfvthdqe 192
                 + lsGG+++rvalar l   p++llldep   lda+      awl+ + ++ k t v +thd+ 
  MMETSP1137-20121227|3391_1 255 AVLSGGEKRRVALARLLLESPDLLLLDEPTNHLDAQS----VAWLQTFLQDFKGTVVAITHDRY 314
                 679********************************85....689999999************85 PP

  == domain 3    score: 70.1 bits;  conditional E-value: 7.9e-22
   TIGR00968   2 lianvskrfGdfqalddvdlevktGslvallGpsGsGkstllrviaGlekpdsGrilleGrdvtrvkvrdreiGfvfqhyalfkhltv.rdniafGleirkkdkakikakveellelvqleklgdrypsqlsGGqrqrvalaralavepqvllldepfgaldakvrkelrawlr 174
                 + +++sk f   + lddv+++++ G +v+++Gp G+Gk+tllr+++G e pdsG++ ++G+ v  v v + +   + ++ ++f+ +t   d+i++G         ++k +        + ++ +++  ++lsGG+r+rv la+ l ++ +vllldep   ld +  + l + l 
  MMETSP1137-20121227|3391_1 420 EASHLSKGFNGRTLLDDVSFSIPPGAIVGIVGPNGAGKTTLLRMLTGEEAPDSGEL-VKGQTVKLVVVDQSR-ESLANDKSVFEEITDgADEITLGT-------STVKGRAYTSWFGFK-AGDQQKRVANLSGGERNRVQLAKVLRMHGNVLLLDEPTNDLDVHTMRSLEEALL 583
                 5678999**99*******************************************97.699998777665443.334455566666663245555554.......445555443333333.3456667789********************************998888776654 PP

>> TIGR01166  cbiO: cobalt ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.3   0.2   1.6e-19   8.9e-18       5     186 ..     112     312 ..     108     315 .. 0.77
   2 !   67.3   0.3   4.7e-21   2.6e-19       5     185 ..     431     594 ..     428     597 .. 0.85

  Alignments for each domain:
  == domain 1    score: 62.3 bits;  conditional E-value: 1.6e-19
   TIGR01166   5 aevlkglnlavergevlallGanGaGkstlllhln.......GllrPksGkvl........ldGeeldysrkgllelrkkvalvlqdpddqlfaadvdedvafgplnlGlseaeverr........vrealaavdisgleerpthllsgGekkrvaiagavalrpdvllldePtagldpaGaeqlleilrklreeGktvvisthd 186
                  + lk++nl +  g +++l+G nGaGkstll+ ++       G+ +P+sG+ +        l+G+ ++ s    ++  k +   + +   ++  +  d+ +  ++  lG  ++e+e++        v+ a++a+      +  + +lsgGek+rva+a  +   pd+llldePt  ld++ +  l + l+ ++    tvv  thd
  MMETSP1137-20121227|3391_1 112 RQLLKDINLCFYPGAKIGLVGLNGAGKSTLLKIMAgvdtefeGTAKPQSGATIgylpqepeLEGRTVQESIDLAVASSKALLAQFEELSAKVCEPMDDDAMEQALAELGRVQDEIESKdlweldrvVSRAMEALRCPP-GDAEVAVLSGGEKRRVALARLLLESPDLLLLDEPTNHLDAQSVAWLQTFLQDFK---GTVVAITHD 312
                 4689***************************976511111116789999987534333344788888887777777788888888899999998888888999999****9999986511111111566666665544.3556789**************************************999998876...367777888 PP

  == domain 2    score: 67.3 bits;  conditional E-value: 4.7e-21
   TIGR01166   5 aevlkglnlavergevlallGanGaGkstlllhlnGllrPksGkvlldGeeldysrkgllelrkkvalvlqdpddqlfaadvdedvafgplnlGlseaeverrvrealaavdisgleerpthllsgGekkrvaiagavalrpdvllldePtagldpaGaeqlleilrklreeGktvvisth 185
                    l+++++++  g  ++++G+nGaGk+tll++l+G   P sG+++ +G+ ++            + +v q  +      +v+e+++ g   + l    v+ r   +    ++ + ++r +  lsgGe+ rv +a ++ ++ +vllldePt +ld + ++ l e+l  l+ +G  +v+s h
  MMETSP1137-20121227|3391_1 431 RTLLDDVSFSIPPGAIVGIVGPNGAGKTTLLRMLTGEEAPDSGELV-KGQTVK------------LVVVDQSRESLANDKSVFEEITDGADEITLGTSTVKGRAYTSWFGFKAGDQQKR-VANLSGGERNRVQLAKVLRMHGNVLLLDEPTNDLDVHTMRSLEEAL--LEFAGCAIVVS-H 594
                 5589***************************************986.565543............23344444444455789***********************99999999887666.568**************************************99998..55678888876.4 PP

>> TIGR00960  3a0501s02: type II secretory pathway family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   0.0   6.7e-07   3.7e-05       7      59 ..     103     155 ..      97     169 .. 0.89
   2 !   46.0   0.0     2e-14   1.1e-12     137     215 ..     255     330 ..     214     331 .. 0.85
   3 !   59.2   0.1   1.8e-18   9.9e-17       1     210 [.     418     608 ..     418     613 .. 0.82

  Alignments for each domain:
  == domain 1    score: 21.4 bits;  conditional E-value: 6.7e-07
   TIGR00960   7 vskaykgaaelaldnvtvkiekGelvflvGhsGaGkstllklilgiekpsaGk 59 
                 +sk+ + + +  l+++++    G  + lvG  GaGkstllk++ g+++  +G 
  MMETSP1137-20121227|3391_1 103 LSKTLPDGSRQLLKDINLCFYPGAKIGLVGLNGAGKSTLLKIMAGVDTEFEGT 155
                 68889999999*********************************999877775 PP

  == domain 2    score: 46.0 bits;  conditional E-value: 2e-14
   TIGR00960 137 vqlsgGeqqrvaiaravvnkPallladePtgnlddelsrdilelleevnraGttvlvathdenlveskrkrvltlskGk 215
                   lsgGe++rva+ar ++++P lll dePt  ld +    +  +l++++    tv+  thd+ ++e++ k +l+l++G+
  MMETSP1137-20121227|3391_1 255 AVLSGGEKRRVALARLLLESPDLLLLDEPTNHLDAQSVAWLQTFLQDFK---GTVVAITHDRYFLETTCKWILELERGE 330
                 469*******************************998888888888886...478999******************995 PP

  == domain 3    score: 59.2 bits;  conditional E-value: 1.8e-18
   TIGR00960   1 mikfeqvskaykgaaelaldnvtvkiekGelvflvGhsGaGkstllklilgiekpsaGkirvsgqdltklrdrevpflrrqiGivfqd.fkllsdrtvydnvalalriiGvkgreieervsaalekvGlkd.kakalPvqlsgGeqqrvaiaravvnkPallladePtgnlddelsrdilelleevnraGttvlvathdenlveskrkrvlt 210
                 +i+ +++sk ++g +   ld+v+++i+ G +v +vG+ GaGk+tll++++g e p +G++ v+gq ++               +v q    l +d++v++++      i   +  ++ r+ ++    G+k   +++   +lsgGe+ rv++a+ +  + ++ll dePt +ld ++ r + e l e+  aG ++ v +hd+ ++++   ++l 
  MMETSP1137-20121227|3391_1 418 VIEASHLSKGFNGRTL--LDDVSFSIPPGAIVGIVGPNGAGKTTLLRMLTGEEAPDSGEL-VKGQTVKL-------------VVVDQSrESLANDKSVFEEITDGADEITLGTSTVKGRAYTSW--FGFKAgDQQKRVANLSGGERNRVQLAKVLRMHGNVLLLDEPTNDLDVHTMRSLEEALLEF--AGCAI-VVSHDRFFLDRLATHILA 608
                 6888999***999877..****************************************96.67776643.............344454135678899999999888888888888888887765..56554133445579**********************************999998888776..46554.558999999988887775 PP

>> TIGR03265  PhnT2: putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.0   0.0   3.2e-07   1.8e-05      16      71 ..     111     167 ..      98     174 .. 0.84
   2 !   40.1   0.0     1e-12   5.5e-11     134     195 ..     256     313 ..     248     384 .. 0.85
   3 !   68.6   0.1   2.1e-21   1.2e-19       3     177 ..     417     582 ..     415     596 .. 0.83

  Alignments for each domain:
  == domain 1    score: 22.0 bits;  conditional E-value: 3.2e-07
   TIGR03265  16 aftalkdislsvkkgelvclLGPsGCGkttLLriiaGLekqdaGail.lggrditrl 71 
                 + + lkdi+l    g  + l+G  G Gk+tLL+i+aG++++ +G+   ++g  i  l
  MMETSP1137-20121227|3391_1 111 SRQLLKDINLCFYPGAKIGLVGLNGAGKSTLLKIMAGVDTEFEGTAKpQSGATIGYL 167
                 5688************************************99998652555666555 PP

  == domain 2    score: 40.1 bits;  conditional E-value: 1e-12
   TIGR03265 134 qlsGGqqqrvaLaralalsPglLLLDePlsaLDakvrekLreelkklqrklgvttimvthdq 195
                  lsGG ++rvaLar l  sP+lLLLDeP   LDa+  + L++ l+++    + t + +thd+
  MMETSP1137-20121227|3391_1 256 VLSGGEKRRVALARLLLESPDLLLLDEPTNHLDAQSVAWLQTFLQDF----KGTVVAITHDR 313
                 69*********************************999988877665....45777788886 PP

  == domain 3    score: 68.6 bits;  conditional E-value: 2.1e-21
   TIGR03265   3 eylsieeiekefeaftalkdislsvkkgelvclLGPsGCGkttLLriiaGLekqdaGaillggrditrlppqkrdyGivfqsYaLfPnltvaeniayGLknkklkreevaerveelLelvgls.gseekyPgqlsGGqqqrvaLaralalsPglLLLDePlsaLDakvrekLreel 177
                 + ++ ++++k f+  t l+d+s+s+  g +v ++GP G GkttLLr+++G e +d+G++++g+     +  q r+        +L  +  v e i+ G  +  l+++ v+ r  +  +  g++ g ++k  + lsGG + rv La+ l +  ++LLLDeP   LD +   +L e l
  MMETSP1137-20121227|3391_1 417 QVIEASHLSKGFNGRTLLDDVSFSIPPGAIVGIVGPNGAGKTTLLRMLTGEEAPDSGELVKGQTVKLVVVDQSRE--------SLANDKSVFEEITDGADEITLGTSTVKGRAYT--SWFGFKaGDQQKRVANLSGGERNRVQLAKVLRMHGNVLLLDEPTNDLDVHTMRSLEEAL 582
                 56788999**************************************************98776554555555555........45666777788888888888888888887655..45666525778999**********************************99888887665 PP

>> TIGR01842  type_I_sec_PrtD: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.3   0.1   7.8e-11   4.3e-09     301     412 ..      82     182 ..       7     190 .. 0.83
   2 !   36.8   0.0   6.4e-12   3.5e-10     453     530 ..     255     330 ..     219     344 .. 0.85
   3 !   33.7   0.0   5.5e-11     3e-09     319     374 ..     419     474 ..     375     490 .. 0.73
   4 !   24.6   0.0   3.2e-08   1.7e-06     453     524 ..     538     607 ..     530     621 .. 0.80

  Alignments for each domain:
  == domain 1    score: 33.3 bits;  conditional E-value: 7.8e-11
   TIGR01842 301 lpareealklPepegelevenvslvppeekkktlkgisfalkaGealaiiGpsgsGkssLarllvGvwlpasGsvrlDgadlkqwdretlGksiGYlPqdveLfeGtvaeni 412
                 +++r+++l+     +  ++  +s + p++ ++ lk+i++   +G+ ++++G  g+Gks+L +++ Gv ++ +G+            + + G +iGYlPq+ eL   tv+e i
  MMETSP1137-20121227|3391_1  82 SQSRQSSLDDSTKSFIFTILGLSKTLPDGSRQLLKDINLCFYPGAKIGLVGLNGAGKSTLLKIMAGVDTEFEGTA-----------KPQSGATIGYLPQEPELEGRTVQESI 182
                 555555555555555666666777889999*************************************99988875...........5678*************999999987 PP

  == domain 2    score: 36.8 bits;  conditional E-value: 6.4e-12
   TIGR01842 453 aaLsgGqrqRiaLaRalygdPklvvLDePnanLDeeGeqalakalkelkarkitvvvithrpsllel.vdkilvlkdGa 530
                 a LsgG + R+aLaR l  +P l++LDeP   LD++  + l + l++    k tvv ith    le+  + il l+ G+
  MMETSP1137-20121227|3391_1 255 AVLSGGEKRRVALARLLLESPDLLLLDEPTNHLDAQSVAWLQTFLQDF---KGTVVAITHDRYFLETtCKWILELERGE 330
                 579********************************9988888777776...5899****97777664156677787776 PP

  == domain 3    score: 33.7 bits;  conditional E-value: 5.5e-11
   TIGR01842 319 venvslvppeekkktlkgisfalkaGealaiiGpsgsGkssLarllvGvwlpasGs 374
                 +e+ +l +  + ++ l ++sf++ +G++++i+Gp g+Gk++L r+l+G   p sG+
  MMETSP1137-20121227|3391_1 419 IEASHLSKGFNGRTLLDDVSFSIPPGAIVGIVGPNGAGKTTLLRMLTGEEAPDSGE 474
                 4444555556667999*********************************9999997 PP

  == domain 4    score: 24.6 bits;  conditional E-value: 3.2e-08
   TIGR01842 453 aaLsgGqrqRiaLaRalygdPklvvLDePnanLDeeGeqalakalkelkarkitvvvithrpsllelvdkil 524
                 a+LsgG r R+ La+ l  +  +++LDeP  +LD +    l +al e   +++++vv   r  l +l+ +il
  MMETSP1137-20121227|3391_1 538 ANLSGGERNRVQLAKVLRMHGNVLLLDEPTNDLDVHTMRSLEEALLEF--AGCAIVVSHDRFFLDRLATHIL 607
                 79*******************************************876..4555555444555555555555 PP

>> TIGR01188  drrA: daunorubicin resistance ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.0   0.1     3e-17   1.6e-15       9     204 ..     115     333 ..     110     390 .. 0.75
   2 !   72.3   0.2   1.5e-22   8.5e-21       2     169 ..     427     584 ..     426     606 .. 0.83

  Alignments for each domain:
  == domain 1    score: 55.0 bits;  conditional E-value: 3e-17
   TIGR01188   9 vdgvnlkveegevfglLGPnGAGKtttikmLttllkPdsGtar.....vaGyDvvrepd....evRrsigvvpqka....svdedLta.....renlellgelyglpkkeaeeraeellelvelkeaa.........dkkvktysgGmrrrlelaasliaqPevlfLDEPtiGLDprtrraiwdlieelkkegvtilltthyleeadkladrvaiidkGkiia 204
                 ++++nl  + g  +gl+G nGAGK+t++k+++++ +  +Gta+       Gy + +ep+    +v +si +   +     +  e+L+a     +++  +  +l +l + + e  +++l el  ++  a         d +v  +sgG +rr+ la+ l+++P++l LDEPt  LD+++ + +  +++++k    t++  th+ +  ++ +  +  +++G+ + 
  MMETSP1137-20121227|3391_1 115 LKDINLCFYPGAKIGLVGLNGAGKSTLLKIMAGVDTEFEGTAKpqsgaTIGY-LPQEPElegrTVQESIDLAVASSkallAQFEELSAkvcepMDDDAMEQALAELGRVQDEIESKDLWELDRVVSRAmealrcppgDAEVAVLSGGEKRRVALARLLLESPDLLLLDEPTNHLDAQSVAWLQTFLQDFKG---TVVAITHDRYFLETTCKWILELERGEGVP 333
                 789999999************************9887777775211113466.45666555559999998755433112245789998332223455688888888888877777777776555544312222333377899***************************************9999999875...78888999999999999998888887655 PP

  == domain 2    score: 72.3 bits;  conditional E-value: 1.5e-22
   TIGR01188   2 kygefkAvdgvnlkveegevfglLGPnGAGKtttikmLttllkPdsGtarvaGyDvvrepdevRrsigvvpq.kasvdedLtarenlellgelyglpkkeaeeraeellelvelkeaadkkvktysgGmrrrlelaasliaqPevlfLDEPtiGLDprtrraiwdliee 169
                  ++  + +d+v+++++ g ++g++GPnGAGKtt+++mLt+   PdsG+  v+G  v         ++ vv q + s+ +d +  e+++  ++   l  ++ + ra      ++  ++ +k+v ++sgG r r++la  l  + +vl LDEPt  LD++t r++ + + e
  MMETSP1137-20121227|3391_1 427 GFNGRTLLDDVSFSIPPGAIVGIVGPNGAGKTTLLRMLTGEEAPDSGE-LVKGQTV---------KLVVVDQsRESLANDKSVFEEITDGADEITLGTSTVKGRAYTSWFGFKAGDQ-QKRVANLSGGERNRVQLAKVLRMHGNVLLLDEPTNDLDVHTMRSLEEALLE 584
                 56777789***************************************8.6888665.........2344444145667777777777777788888889999999998888887775.56799*************************************999877655 PP

>> TIGR03797  NHLM_micro_ABC2: NHLM bacteriocin system ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.5   0.1   1.4e-07   7.7e-06     464     508 ..     110     154 ..     103     163 .. 0.90
   2 !   33.3   0.0   7.7e-11   4.2e-09     587     675 ..     255     345 ..     251     351 .. 0.89
   3 !   43.7   0.0   5.3e-14   2.9e-12     452     518 ..     419     482 ..     391     494 .. 0.79
   4 !   24.7   0.0   3.1e-08   1.7e-06     587     643 ..     538     594 ..     534     610 .. 0.94

  Alignments for each domain:
  == domain 1    score: 22.5 bits;  conditional E-value: 1.4e-07
   TIGR03797 464 dgplvLddvslkiepGefvaivGaSGsGKStllrlLLgFekPesG 508
                  +++ L+d++l   pG  +++vG  G+GKStll+++ g ++  +G
  MMETSP1137-20121227|3391_1 110 GSRQLLKDINLCFYPGAKIGLVGLNGAGKSTLLKIMAGVDTEFEG 154
                 46799*********************************9987666 PP

  == domain 2    score: 33.3 bits;  conditional E-value: 7.7e-11
   TIGR03797 587 gtlSGGQrQRlliAralvrkPrillfDEATSALDNrtQaiVsesleklkvtRiviAH.RLSTirnadrilvleeGr.vveqGsyeeLlake 675
                 + lSGG + R+ +Ar l + P +ll+DE T  LD ++ a     l+ +k t ++i H R    + ++ il le G+ v  +G+y+e lak+
  MMETSP1137-20121227|3391_1 255 AVLSGGEKRRVALARLLLESPDLLLLDEPTNHLDAQSVAWLQTFLQDFKGTVVAITHdRYFLETTCKWILELERGEgVPFEGNYSEWLAKK 345
                 579******************************************************66666678999*******8355699999988765 PP

  == domain 3    score: 43.7 bits;  conditional E-value: 5.3e-14
   TIGR03797 452 ievdrvtFrYekdgplvLddvslkiepGefvaivGaSGsGKStllrlLLgFekPesGsvlyDGqdle 518
                 ie ++++     +g++ Lddvs++i pG  v+ivG+ G+GK tllr+L g e P+sG+++  Gq ++
  MMETSP1137-20121227|3391_1 419 IEASHLSK--GFNGRTLLDDVSFSIPPGAIVGIVGPNGAGKTTLLRMLTGEEAPDSGELV-KGQTVK 482
                 44444444..44999******************************************975.566555 PP

  == domain 4    score: 24.7 bits;  conditional E-value: 3.1e-08
   TIGR03797 587 gtlSGGQrQRlliAralvrkPrillfDEATSALDNrtQaiVsesleklkvtRiviAH 643
                 ++lSGG r R+ +A+ l  + ++ll+DE T  LD +t +   e+l +++   iv+ H
  MMETSP1137-20121227|3391_1 538 ANLSGGERNRVQLAKVLRMHGNVLLLDEPTNDLDVHTMRSLEEALLEFAGCAIVVSH 594
                 79*****************************************************99 PP

>> TIGR02982  heterocyst_DevA: ABC exporter ATP-binding subunit, DevA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0   1.5e-05   0.00083      17      61 ..     111     155 ..     100     182 .. 0.92
   2 !   46.7   0.0   1.1e-14     6e-13     139     217 ..     254     329 ..     213     331 .. 0.89
   3 !   24.6   0.0   6.4e-08   3.5e-06      13      62 ..     426     475 ..     418     497 .. 0.85
   4 !   33.4   0.0   1.3e-10   7.2e-09     136     215 ..     534     610 ..     507     614 .. 0.85

  Alignments for each domain:
  == domain 1    score: 16.8 bits;  conditional E-value: 1.5e-05
   TIGR02982  17 rkqvlfdinleiepgeiviltGpsGsGkttlltligglrsvqeGe 61 
                  +q+l+dinl   pg  + l G  G+Gk tll +++g+ +  eG+
  MMETSP1137-20121227|3391_1 111 SRQLLKDINLCFYPGAKIGLVGLNGAGKSTLLKIMAGVDTEFEGT 155
                 589**********************************99998886 PP

  == domain 2    score: 46.7 bits;  conditional E-value: 1.1e-14
   TIGR02982 139 pedlsgGqkqrvaiaralvarPklvladePtaaldkksgrevvellqklareqgttillvthdnrildva.drivkmedG 217
                  + lsgG k+rva+ar l + P+l+l dePt  ld++s    v  lq+  ++   t++ +thd   l+ + + i+++e+G
  MMETSP1137-20121227|3391_1 254 VAVLSGGEKRRVALARLLLESPDLLLLDEPTNHLDAQS----VAWLQTFLQDFKGTVVAITHDRYFLETTcKWILELERG 329
                 5679********************************99....56677777788899*********999762569999998 PP

  == domain 3    score: 24.6 bits;  conditional E-value: 6.4e-08
   TIGR02982  13 kgelrkqvlfdinleiepgeiviltGpsGsGkttlltligglrsvqeGel 62 
                 kg + + +l d++++i pg iv + Gp G+Gkttll +++g  +  +Gel
  MMETSP1137-20121227|3391_1 426 KGFNGRTLLDDVSFSIPPGAIVGIVGPNGAGKTTLLRMLTGEEAPDSGEL 475
                 56667889*********************************999999998 PP

  == domain 4    score: 33.4 bits;  conditional E-value: 1.3e-10
   TIGR02982 136 dykpedlsgGqkqrvaiaralvarPklvladePtaaldkksgrevvellqklareqgttillvthdnrild.vadrivkme 215
                 +++ ++lsgG + rv +a+ l  + +++l dePt  ld ++ r++ e l + a   g++i +v hd   ld +a  i+  e
  MMETSP1137-20121227|3391_1 534 QKRVANLSGGERNRVQLAKVLRMHGNVLLLDEPTNDLDVHTMRSLEEALLEFA---GCAI-VVSHDRFFLDrLATHILAAE 610
                 56789**************************************9999888876...8876.689**999986788887655 PP

>> TIGR03740  galliderm_ABC: lantibiotic protection ABC transporter, ATP-binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.0   0.0   2.1e-07   1.2e-05      11      55 ..     110     154 ..      99     161 .. 0.86
   2 !   27.2   0.0   1.1e-08   6.1e-07     124     177 ..     256     309 ..     249     318 .. 0.88
   3 !   67.5   0.0     5e-21   2.8e-19       2     180 ..     420     593 ..     419     612 .. 0.79

  Alignments for each domain:
  == domain 1    score: 23.0 bits;  conditional E-value: 2.1e-07
   TIGR03740  11 kkqavvnnvslkvkknsvygllGpnGaGkstllklltGllrktsG 55 
                 + ++++++++l     +  gl+G nGaGkstllk+++G+ ++ +G
  MMETSP1137-20121227|3391_1 110 GSRQLLKDINLCFYPGAKIGLVGLNGAGKSTLLKIMAGVDTEFEG 154
                 468899*******99999********************9766555 PP

  == domain 2    score: 27.2 bits;  conditional E-value: 1.1e-08
   TIGR03740 124 qfslGmkqrlGiaiallnkPkllildePtnGldPlGiqelreliksfpekGitv 177
                  +s G k+r+ +a  ll++P+ll+ldePtn ld   +  l+ +++ f+   +++
  MMETSP1137-20121227|3391_1 256 VLSGGEKRRVALARLLLESPDLLLLDEPTNHLDAQSVAWLQTFLQDFKGTVVAI 309
                 568899****************************************98766555 PP

  == domain 3    score: 67.5 bits;  conditional E-value: 5e-21
   TIGR03740   2 etknlskkfkkqavvnnvslkvkknsvygllGpnGaGkstllklltGllrktsGeilldgrewtrkdl.kkiGsliesPalyenlta.renlkvrtlllglpesrieevlkivdlen.tekkkakqfslGmkqrlGiaiallnkPkllildePtnGldPlGiqelreliksfpekGitvils 180
                 e  +lsk f+ ++++++vs++++  ++ g++GpnGaGk+tll++ltG   ++sGe++  g+++    + ++  sl ++ +++e++t   +++ + t   +++        +  +++  +++k++ ++s G ++r+ +a  l  + ++l+ldePtn ld   ++ l e +  f   G ++++s
  MMETSP1137-20121227|3391_1 420 EASHLSKGFNGRTLLDDVSFSIPPGAIVGIVGPNGAGKTTLLRMLTGEEAPDSGELVK-GQTVKLVVVdQSRESLANDKSVFEEITDgADEITLGTS--TVKG---RAYTSWFGFKAgDQQKRVANLSGGERNRVQLAKVLRMHGNVLLLDEPTNDLDVHTMRSLEEALLEFA--GCAIVVS 593
                 5679***************************************************865.55554444315678999999999999851344443332..3333...3344455554426778999***********************************9999999988876..5555554 PP

>> TIGR03796  NHLM_micro_ABC1: NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.1   0.1   4.4e-09   2.4e-07     482     535 ..     102     155 ..      14     169 .. 0.76
   2 !   29.8   0.0   7.1e-10   3.9e-08     615     690 ..     256     332 ..     236     349 .. 0.87
   3 !   55.9   0.0   9.1e-18     5e-16     440     670 ..     382     594 ..     374     608 .. 0.80

  Alignments for each domain:
  == domain 1    score: 27.1 bits;  conditional E-value: 4.4e-09
   TIGR03796 482 nvtfgysaleapliedfslslkpGqrvAlvGgsGsGkstiaklvaGlyepwsGe 535
                 +++ +     ++l++d++l   pG+++ lvG  G+Gkst+ k++aG+ ++++G+
  MMETSP1137-20121227|3391_1 102 GLSKTLPDGSRQLLKDINLCFYPGAKIGLVGLNGAGKSTLLKIMAGVDTEFEGT 155
                 444455556789***********************************9999996 PP

  == domain 2    score: 29.8 bits;  conditional E-value: 7.1e-10
   TIGR03796 615 nlsGGqrqRleiARaLvknPsiLilDEatsaLDaetEkaidenlrrRgctciivaH.RLstiRdcdeiivlerGkvv 690
                  lsGG++ R+ +AR L + P +L+lDE t  LDa+    ++  l+    t++ ++H R      c  i+ lerG+ v
  MMETSP1137-20121227|3391_1 256 VLSGGEKRRVALARLLLESPDLLLLDEPTNHLDAQSVAWLQTFLQDFKGTVVAITHdRYFLETTCKWILELERGEGV 332
                 69********************************************999***9999565556689999999999854 PP

  == domain 3    score: 55.9 bits;  conditional E-value: 9.1e-18
   TIGR03796 440 eadlerldDvlenpvdeeleeeeekaaeseekekLsG.kvelrnvtfgysaleapliedfslslkpGqrvAlvGgsGsGkstiaklvaGlyepwsGeilfDgkpreeiprevlanslalvdqdivlfegtvrdnltlwdetipeedlvrAakDAaihdvilarpggyeaelaegganlsGGqrqRleiARaLvknPsiLilDEatsaLDaetEkaidenlrrRgctciivaH 670
                 +a l+r +++l++p  e+l ++++      +  +L    +e ++++ g++   + l++d+s+s+ pG+ v +vG+ G+Gk t+ ++++G  +p sGe++  g++ + +  +  ++sla  d+ ++   +   d +tl  +t++ ++ +              ++g+ +++     anlsGG+r R+++A+ L  +  +L+lDE t  LD +t ++++e+l +     i+v+H
  MMETSP1137-20121227|3391_1 382 KARLRRYEEMLQAPPRESLAHSAQ--IYIPPGPRLGSqVIEASHLSKGFNG--RTLLDDVSFSIPPGAIVGIVGPNGAGKTTLLRMLTGEEAPDSGELV-KGQTVKLVVVDQSRESLAN-DKSVFEEITDGADEITLGTSTVKGRAYT---------SWFGFKAGDQQKR----VANLSGGERNRVQLAKVLRMHGNVLLLDEPTNDLDVHTMRSLEEALLEFAGCAIVVSH 594
                 677888888888888777777333..3334445775515799999999986..59******************************************85.7888888888889999985.6666666667789999999988766443.........3444555555555....57******************************************99886666677777 PP

>> TIGR03522  GldA_ABC_ATP: gliding motility-associated ABC transporter ATP-binding subunit GldA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.0   4.1e-06   0.00022      13      51 ..     110     148 ..      99     171 .. 0.84
   2 !   24.9   0.0   4.9e-08   2.7e-06     131     218 ..     254     340 ..     241     393 .. 0.76
   3 !   45.5   0.0   2.5e-14   1.4e-12       3      64 ..     419     479 ..     417     495 .. 0.89
   4 !   23.7   0.0   1.2e-07   6.3e-06     125     170 ..     531     576 ..     522     596 .. 0.87

  Alignments for each domain:
  == domain 1    score: 18.6 bits;  conditional E-value: 4.1e-06
   TIGR03522  13 gkqkaldevsfeaekGeivGflGPnGaGkstlmkiltgy 51 
                 g+++ l+++ +   +G  +G++G nGaGkstl+ki++g 
  MMETSP1137-20121227|3391_1 110 GSRQLLKDINLCFYPGAKIGLVGLNGAGKSTLLKIMAGV 148
                 6678899999999**********************9986 PP

  == domain 2    score: 24.9 bits;  conditional E-value: 4.9e-08
   TIGR03522 131 igalskGyrqrvGlakallhdPkvlildePttGldPnqlveirevikeiakdktvilsthimqevealcdrviiinkGkiv.adkklee 218
                 ++ ls G ++rv la+ ll  P++l+ldePt  ld   +  ++  +++   + tv+  th    +e+ c+ ++ +++G+ v  + + +e
  MMETSP1137-20121227|3391_1 254 VAVLSGGEKRRVALARLLLESPDLLLLDEPTNHLDAQSVAWLQTFLQDF--KGTVVAITHDRYFLETTCKWILELERGEGVpFEGNYSE 340
                 6789********************************9999999999887..46999999999999999999999999986623444444 PP

  == domain 3    score: 45.5 bits;  conditional E-value: 2.5e-14
   TIGR03522   3 vevsdlsklygkqkaldevsfeaekGeivGflGPnGaGkstlmkiltgylkadsGsvavage 64 
                 +e s+lsk +  +  ld+vsf++ +G ivG +GPnGaGk+tl+++ltg  ++dsG + v+g+
  MMETSP1137-20121227|3391_1 419 IEASHLSKGFNGRTLLDDVSFSIPPGAIVGIVGPNGAGKTTLLRMLTGEEAPDSGEL-VKGQ 479
                 67899**************************************************85.4554 PP

  == domain 4    score: 23.7 bits;  conditional E-value: 1.2e-07
   TIGR03522 125 aeqhkkigalskGyrqrvGlakallhdPkvlildePttGldPnqlv 170
                  +q k++++ls G r+rv lak l  + +vl+ldePt  ld   + 
  MMETSP1137-20121227|3391_1 531 GDQQKRVANLSGGERNRVQLAKVLRMHGNVLLLDEPTNDLDVHTMR 576
                 5799*********************9***************87665 PP

>> TIGR03411  urea_trans_UrtD: urea ABC transporter, ATP-binding protein UrtD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.1   0.1   7.3e-14     4e-12      18     219 ..     115     330 ..     106     345 .. 0.77
   2 !   42.7   0.0     2e-13   1.1e-11       3      69 ..     419     486 ..     417     496 .. 0.89
   3 !   24.7   0.0   6.4e-08   3.5e-06     137     214 ..     533     608 ..     485     631 .. 0.84

  Alignments for each domain:
  == domain 1    score: 44.1 bits;  conditional E-value: 7.3e-14
   TIGR03411  18 lndlslsveegelrviiGpnGaGkttllDvitG.......ktrpdeGsv..lfkgk.dltklkeaeiarlGigRkfqkpsvfeeltvl.......enlelalkadksvlallfarlskeekerieevleligLeekadkkaglLshGqkqwLeigmllvqepkllllDePvaGmtdeetektaellkelakersvvvvehDmefvrelaekvtvlheGk 219
                 l+d++l   +g    ++G nGaGk+tll +++G        ++p++G    ++ ++ +l + + +e   l ++      + feel+ +       + +e al++  +v + + ++   e ++ +++++e ++     d++ ++Ls G+k ++ ++ ll+++p+llllDeP+  + ++  +    +l++ ++  +vv + hD  f+++  + +  l++G+
  MMETSP1137-20121227|3391_1 115 LKDINLCFYPGAKIGLVGLNGAGKSTLLKIMAGvdtefegTAKPQSGATigYLPQEpELEGRTVQESIDLAVASSKALLAQFEELSAKvcepmddDAMEQALAELGRVQDEIESKDLWELDRVVSRAMEALRCPP-GDAEVAVLSGGEKRRVALARLLLESPDLLLLDEPTNHLDAQSVAWLQTFLQDFKG--TVVAITHDRYFLETTCKWILELERGE 330
                 789999999999999***************9863222222688999976233555569****9999999999998888888999875422222223455566666666666666666666666666666666554.5677889*******************************99999999999999876..799**********9999888888886 PP

  == domain 2    score: 42.7 bits;  conditional E-value: 2e-13
   TIGR03411   3 LevedvsvsfdgfkalndlslsveegelrviiGpnGaGkttllDvitGktrpdeGsvlfkgk.dltkl 69 
                 +e +++s  f+g + l+d+s+s+ +g +  i+GpnGaGkttll ++tG   pd+G+++  ++ +l+ +
  MMETSP1137-20121227|3391_1 419 IEASHLSKGFNGRTLLDDVSFSIPPGAIVGIVGPNGAGKTTLLRMLTGEEAPDSGELVKGQTvKLVVV 486
                 677889999***********************************************998887676655 PP

  == domain 3    score: 24.7 bits;  conditional E-value: 6.4e-08
   TIGR03411 137 adkkaglLshGqkqwLeigmllvqepkllllDePvaGmtdeetektaellkelakersvvvvehDmefvrelaekvtv 214
                 ++k+ ++Ls G++ +++++ +l  + ++lllDeP+  +  + +++  e l e a+    +vv hD  f+++la+++  
  MMETSP1137-20121227|3391_1 533 QQKRVANLSGGERNRVQLAKVLRMHGNVLLLDEPTNDLDVHTMRSLEEALLEFAG--CAIVVSHDRFFLDRLATHILA 608
                 5677899******************************************999987..56899***********98754 PP

>> TIGR03410  urea_trans_UrtE: urea ABC transporter, ATP-binding protein UrtE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.0   2.2e-06   0.00012      11      59 ..     110     158 ..     105     194 .. 0.89
   2 !   28.5   0.0   3.8e-09   2.1e-07     131     209 ..     256     330 ..     250     348 .. 0.79
   3 !   62.5   0.0   1.5e-19     8e-18       3     226 ..     421     632 ..     419     633 .. 0.82

  Alignments for each domain:
  == domain 1    score: 19.4 bits;  conditional E-value: 2.2e-06
   TIGR03410  11 gesevlrdvslevekgevvavlGrngvGkttllkalvgllkvksGeiel 59 
                 g+ ++l+d++l    g  + ++G ng+Gk+tllk + g+ ++ +G+ + 
  MMETSP1137-20121227|3391_1 110 GSRQLLKDINLCFYPGAKIGLVGLNGAGKSTLLKIMAGVDTEFEGTAKP 158
                 56789**********************************9999998765 PP

  == domain 2    score: 28.5 bits;  conditional E-value: 3.8e-09
   TIGR03410 131 dLsGGqqqqlaiaRaLvtePklllLDePteGiqPsiikeiekvikelakekdlaillveqvldfaleladrylvlerGe 209
                  LsGG +  +a+aR L+ +P lllLDePt+ +    ++ +++ +++ +     +++ + +   f  ++ + +l lerGe
  MMETSP1137-20121227|3391_1 256 VLSGGEKRRVALARLLLESPDLLLLDEPTNHLDAQSVAWLQTFLQDFKG----TVVAITHDRYFLETTCKWILELERGE 330
                 69****************************9999999888888877655....45555555556666666666666665 PP

  == domain 3    score: 62.5 bits;  conditional E-value: 1.5e-19
   TIGR03410   3 venlevaYgesevlrdvslevekgevvavlGrngvGkttllkalvgllkvksGeielegeditklkpeervkaGiayvpqGreifpk.ltveenlelglealkkkekkipeeiye.lFPvlkemlkRrgGdLsGGqqqqlaiaRaLvtePklllLDePteGiqPsiikeiekvikelakekdlaillveqvldfaleladrylvle.rGev.vaegekeeldeekvkk 226
                  ++l+  ++  ++l dvs++++ g +v ++G ng+Gkttll+ l+g     sGe+ ++g++++           +  v q re++++  +v e ++ g+++ +  +++++ ++y+  F      +++r  +LsGG +  + +a++L ++ ++llLDePt+ +    ++ +e+++ e     + ai+++ + + f  +la ++l  e  G+   +eg+ ++ ++++vk+
  MMETSP1137-20121227|3391_1 421 ASHLSKGFNGRTLLDDVSFSIPPGAIVGIVGPNGAGKTTLLRMLTGEEAPDSGEL-VKGQTVK-----------LVVVDQSRESLANdKSVFEEITDGADEITLGTSTVKGRAYTsWFGFKAGDQQKRVANLSGGERNRVQLAKVLRMHGNVLLLDEPTNDLDVHTMRSLEEALLEF---AGCAIVVSHDRF-FLDRLATHILAAEgDGQWyFMEGNYQDYEDDRVKR 632
                 67888999999******************************************97.5777775...........456899999887537999999999999999999999999972577777889999***********************************99999999987766...467888887766.55555555554442565414667777777777765 PP

>> TIGR00972  3a0107s01c2: phosphate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.8   0.0   0.00022     0.012      12      51 ..     110     149 ..     104     160 .. 0.87
   2 !   38.8   0.0   2.5e-12   1.4e-10     142     202 ..     254     312 ..     234     332 .. 0.92
   3 !   26.2   0.0   1.8e-08   9.9e-07       2      48 ..     419     465 ..     418     502 .. 0.89
   4 !   32.3   0.0   2.4e-10   1.3e-08     139     202 ..     534     595 ..     523     625 .. 0.85

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 0.00022
   TIGR00972  12 gekealkdvnleikknkvtaliGpsGcGkstllrslnrln 51 
                 g+++ lkd+nl ++  + ++l+G  G+Gkstll+ +  + 
  MMETSP1137-20121227|3391_1 110 GSRQLLKDINLCFYPGAKIGLVGLNGAGKSTLLKIMAGVD 149
                 56789*****************************987665 PP

  == domain 2    score: 38.8 bits;  conditional E-value: 2.5e-12
   TIGR00972 142 alsLsGGqqqrlciaralavePevlLlDePtsaLDpiatekieeliqeLkkkytivivthn 202
                    LsGG ++r+++ar l  +P++lLlDePt  LD+++++ ++ ++q+ k   t+v +th+
  MMETSP1137-20121227|3391_1 254 VAVLSGGEKRRVALARLLLESPDLLLLDEPTNHLDAQSVAWLQTFLQDFKG--TVVAITHD 312
                 567*********************************************986..89999997 PP

  == domain 3    score: 26.2 bits;  conditional E-value: 1.8e-08
   TIGR00972   2 levknlklfygekealkdvnleikknkvtaliGpsGcGkstllrsln 48 
                 +e+++l+  ++ ++ l+dv+++i+  ++++++Gp G+Gk+tllr l 
  MMETSP1137-20121227|3391_1 419 IEASHLSKGFNGRTLLDDVSFSIPPGAIVGIVGPNGAGKTTLLRMLT 465
                 788999**************************************986 PP

  == domain 4    score: 32.3 bits;  conditional E-value: 2.4e-10
   TIGR00972 139 kksalsLsGGqqqrlciaralavePevlLlDePtsaLDpiatekieeliqeLkkkytivivthn 202
                 +k   +LsGG + r+ +a+ l ++ +vlLlDePt  LD  + +++ee + e +     ++v h+
  MMETSP1137-20121227|3391_1 534 QKRVANLSGGERNRVQLAKVLRMHGNVLLLDEPTNDLDVHTMRSLEEALLEFAG--CAIVVSHD 595
                 456679*****************************************9998875..44566666 PP

>> TIGR02769  nickel_nikE: nickel import ATP-binding protein NikE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.1   0.0   1.5e-17     8e-16      23     228 ..     111     330 ..      98     348 .. 0.79
   2 !   47.2   0.2   7.9e-15   4.3e-13      22     223 ..     429     608 ..     416     616 .. 0.80

  Alignments for each domain:
  == domain 1    score: 56.1 bits;  conditional E-value: 1.5e-17
   TIGR02769  23 rkavldnvslsleeGetvallGrsGaGkstlarlllGlekPakGevsfr.Gqdlakldrk...qrkafrrdvqlvfqdsisavnprksvreiigePlrh......ltsldeserkariael..lelvelrsevldklP......rqlsGGqlqriniaralavePklivldeavsnldlvlqasilellkklkqefGlaylfithdlrlvqkfaqrvlvldeGq 228
                  +++l++++l    G  ++l+G  GaGkstl +++ G++   +G+ + + G  +  l ++   + ++++  + l    s + +   + + + + eP+ +      l +l + + +   ++l  l+ v  r+ ++ + P      + lsGG  +r+++ar l  +P l++lde    ld     + ++ l+ + q+f  +++ ithd    ++ ++ +l l++G+
  MMETSP1137-20121227|3391_1 111 SRQLLKDINLCFYPGAKIGLVGLNGAGKSTLLKIMAGVDTEFEGTAKPQsGATIGYLPQEpelEGRTVQESIDLAVASSKALLAQFEELSAKVCEPMDDdameqaLAELGRVQDEIESKDLweLDRVVSRAMEALRCPpgdaevAVLSGGEKRRVALARLLLESPDLLLLDEPTNHLDA----QSVAWLQTFLQDFKGTVVAITHDRYFLETTCKWILELERGE 330
                 6799****************************************99865388888776652236799**********9999999999*********976222222444444444444444422444444555555666233322359***************************99995....456677777777777899****************9999997 PP

  == domain 2    score: 47.2 bits;  conditional E-value: 7.9e-15
   TIGR02769  22 qrkavldnvslsleeGetvallGrsGaGkstlarlllGlekPakGevsfrGqdlakldrkqrkafrrdvqlvfqdsisavnprksvreiigePlrhltsldeserkariaellelvelrsevldklPrqlsGGqlqriniaralavePklivldeavsnldlvlqasilellkklkqefGlaylfithdlrlvqkfaqrvlv 223
                 + +++ld+vs+s+  G  v+++G  GaGk+tl r+l G e P +Ge+  +Gq ++               +v   s  ++   ksv e i++   ++t l  s  k r+    +  ++++ + +k+ ++lsGG   r+ +a+ l ++ ++++lde   +ld++      + l++   ef  + ++++hd    +++a ++l 
  MMETSP1137-20121227|3391_1 429 NGRTLLDDVSFSIPPGAIVGIVGPNGAGKTTLLRMLTGEEAPDSGELV-KGQTVKL--------------VVVDQSRESLANDKSVFEEITDGADEIT-LGTSTVKGRA--YTSWFGFKAGDQQKRVANLSGGERNRVQLAKVLRMHGNVLLLDEPTNDLDVHTM----RSLEEALLEFAGCAIVVSHDRFFLDRLATHILA 608
                 55789****************************************985.7776642..............3445566677777788888888877765.6666666655..56899*********************************************9865....445554445555557799998888888877765 PP

>> TIGR03258  PhnT: 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.0   8.7e-05    0.0047      19      57 ..     110     148 ..     103     168 .. 0.89
   2 !   32.1   0.0   2.5e-10   1.3e-08     137     205 ..     255     318 ..     233     368 .. 0.75
   3 !   61.9   0.2   2.1e-19   1.1e-17       9     181 ..     419     582 ..     412     612 .. 0.85

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 8.7e-05
   TIGR03258  19 garvvlddlsleieaGellallGksGsGkttllravaGf 57 
                 g+r +l+d+ l   +G  + l+G  G+Gk+tll+++aG 
  MMETSP1137-20121227|3391_1 110 GSRQLLKDINLCFYPGAKIGLVGLNGAGKSTLLKIMAGV 148
                 67899********************************96 PP

  == domain 2    score: 32.1 bits;  conditional E-value: 2.5e-10
   TIGR03258 137 aqlsGGqqqrvalaralvvrpdvllldeplsaldaqlrasvveelkalhrelpeltvlyvthdrdealv 205
                 a lsGG ++rvalar l   pd+llldep   ldaq  a ++  l+ +     + tv+ +thdr    +
  MMETSP1137-20121227|3391_1 255 AVLSGGEKRRVALARLLLESPDLLLLDEPTNHLDAQSVAWLQTFLQDF-----KGTVVAITHDRYFLET 318
                 679********************************9877777666655.....4599999999965555 PP

  == domain 3    score: 61.9 bits;  conditional E-value: 2.1e-19
   TIGR03258   9 vvleslrvaygarvvlddlsleieaGellallGksGsGkttllravaGfvkadGGrllvadrdlthlppykrnlallvqn.yalfphlkveenvafGlrarkqskaliaervadalklvqlsdaaarlpaqlsGGqqqrvalaralvvrpdvllldeplsaldaqlrasvveel 181
                 +   +l+  +++r++ldd+s+ i +G ++ ++G+ G+Gkttllr+++G   +d G l+ +++          +l ++ q   +l     v+e+++ G        + ++ r   +    + +d  +r+ a+lsGG ++rv la+ l ++ +vllldep   ld +   s+ e l
  MMETSP1137-20121227|3391_1 419 IEASHLSKGFNGRTLLDDVSFSIPPGAIVGIVGPNGAGKTTLLRMLTGEEAPDSGELVKGQTV---------KLVVVDQSrESLANDKSVFEEITDGADEITLGTSTVKGRAYTSWFGFKAGDQQKRV-ANLSGGERNRVQLAKVLRMHGNVLLLDEPTNDLDVHTMRSLEEAL 582
                 66789***************************************************9887764.........3444444413567788899999999999999999******99*99******99886.78********************************98777776654 PP

>> TIGR02204  MsbA_rel: ABC transporter, permease/ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.0   3.8e-06   0.00021     353     386 ..     112     145 ..     103     162 .. 0.91
   2 !   36.7   0.0   7.6e-12   4.1e-10     475     564 ..     255     344 ..     226     351 .. 0.79
   3 !   51.2   0.3   3.1e-16   1.7e-14     354     522 ..     432     585 ..     413     608 .. 0.82

  Alignments for each domain:
  == domain 1    score: 17.9 bits;  conditional E-value: 3.8e-06
   TIGR02204 353 qkaldgldltvrpGetvalvGPsGaGkstllell 386
                 ++ l++++l   pG ++ lvG  GaGkstll+++
  MMETSP1137-20121227|3391_1 112 RQLLKDINLCFYPGAKIGLVGLNGAGKSTLLKIM 145
                 5679***************************987 PP

  == domain 2    score: 36.7 bits;  conditional E-value: 7.6e-12
   TIGR02204 475 vtLsGGqkqriaiarailkdapiLLLdeatsaLdaeseqlvqqaleelmkgrttlviah.rLatvlkadrivvldkGrive.qGthaeLiak 564
                   LsGG k+r+a+ar +l+   +LLLde t+ Lda+s   +q+ l+      t + i h r    + +  i+ l++G+ v  +G+++e +ak
  MMETSP1137-20121227|3391_1 255 AVLSGGEKRRVALARLLLESPDLLLLDEPTNHLDAQSVAWLQTFLQDFK--GTVVAITHdRYFLETTCKWILELERGEGVPfEGNYSEWLAK 344
                 369****************************************999863..45666777355555667778888888866436777766655 PP

  == domain 3    score: 51.2 bits;  conditional E-value: 3.1e-16
   TIGR02204 354 kaldgldltvrpGetvalvGPsGaGkstllelllrfydPqsGailldGvdlreldpeelrerlalvpqdsalfaasvleniryGrpdasdeeveaaakaaeadefisklpeGydtllGergvtLsGGqkqriaiarailkdapiLLLdeatsaLdaeseqlvqqaleel 522
                 + ld++++++ pG  v +vGP GaGk+tll++l     P sG++ + G+ ++ +  ++ re+la    d     +sv+e i  G  + +   + +++ + +a      ++ G +     r  +LsGG + r+ +a+ +    ++LLLde t+ Ld ++ + +++al e 
  MMETSP1137-20121227|3391_1 432 TLLDDVSFSIPPGAIVGIVGPNGAGKTTLLRMLTGEEAPDSGEL-VKGQTVKLVVVDQSRESLA---ND-----KSVFEEITDGADEIT---LGTSTVKGRAYTSWFGFKAGDQ---QKRVANLSGGERNRVQLAKVLRMHGNVLLLDEPTNDLDVHTMRSLEEALLEF 585
                 579***************************************96.8999999999999999988...44.....466677776654443...3444555555555555566654...468899***********************************99999998654 PP

>> TIGR01846  type_I_sec_HlyB: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.0     4e-06   0.00022     469     506 ..     111     148 ..     105     156 .. 0.88
   2 !   41.6   0.0     2e-13   1.1e-11     592     683 ..     255     346 ..     250     353 .. 0.87
   3 !   44.9   0.3     2e-14   1.1e-12     471     642 ..     432     588 ..     384     623 .. 0.82

  Alignments for each domain:
  == domain 1    score: 17.5 bits;  conditional E-value: 4e-06
   TIGR01846 469 spevlsnlsldikaGeviGivGpsGsGkstltkllqrl 506
                 s ++l++++l   +G  iG+vG  G+Gkstl k++  +
  MMETSP1137-20121227|3391_1 111 SRQLLKDINLCFYPGAKIGLVGLNGAGKSTLLKIMAGV 148
                 5689*****************************99765 PP

  == domain 2    score: 41.6 bits;  conditional E-value: 2e-13
   TIGR01846 592 aalsGGqrqrialaralvanPrilildeatsaldyeseavimrnlreickgrtviiiah.rlstvraadrilvlekGk.ivesGkheellakeg 683
                 a lsGG ++r+alar l+  P +l+lde t  ld++s a ++  l++     tv+ i+h r     +++ il le+G+ +  +G+++e lak++
  MMETSP1137-20121227|3391_1 255 AVLSGGEKRRVALARLLLESPDLLLLDEPTNHLDAQSVAWLQTFLQDFK--GTVVAITHdRYFLETTCKWILELERGEgVPFEGNYSEWLAKKA 346
                 78*******************************************9974..5999999945555568**********845579*****999875 PP

  == domain 3    score: 44.9 bits;  conditional E-value: 2e-14
   TIGR01846 471 evlsnlsldikaGeviGivGpsGsGkstltkllqrlyvPekGrvlvdgvdlaladPawlrrqvgvvlqenvlfsrsirdnialakPaiseekviaaaklaG.ahdfiselkqGyetevgekGaalsGGqrqrialaralvanPrilildeatsaldyeseavimrnlreickg 642
                 ++l+++s++i++G ++GivGp G+Gk+tl ++l     P+ G+ lv g+ + l+             +e++  ++s+ ++i+ +  +i         ++ G a       k G ++    + a+lsGG r r+ la+ l     +l+lde t  ld ++ +++ + l e +  
  MMETSP1137-20121227|3391_1 432 TLLDDVSFSIPPGAIVGIVGPNGAGKTTLLRMLTGEEAPDSGE-LVKGQTVKLVVVDQS--------RESLANDKSVFEEITDGADEITLGTS----TVKGrAYTSWFGFKAGDQQ---KRVANLSGGERNRVQLAKVLRMHGNVLLLDEPTNDLDVHTMRSLEEALLEFAGC 588
                 689***************************************9.788888766533333........4889999*******998777665543....3333144555567777665...5889***********************************999999998887543 PP

>> TIGR01184  ntrCD: nitrate ABC transporter, ATP-binding proteins C and D
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.0   3.7e-06    0.0002       1      41 [.     115     155 ..     115     200 .. 0.89
   2 !   32.6   0.0   2.3e-10   1.3e-08     109     174 ..     251     312 ..     222     317 .. 0.89
   3 !   54.7   0.0   3.9e-17   2.1e-15       1     173 [.     434     594 ..     434     602 .. 0.87

  Alignments for each domain:
  == domain 1    score: 18.8 bits;  conditional E-value: 3.7e-06
   TIGR01184   1 lkdvdleikkgefislighsgcgkstllnliaglekptsga 41 
                 lkd++l    g  i l+g  g gkstll ++ag++   +g+
  MMETSP1137-20121227|3391_1 115 LKDINLCFYPGAKIGLVGLNGAGKSTLLKIMAGVDTEFEGT 155
                 79********************************9877775 PP

  == domain 2    score: 32.6 bits;  conditional E-value: 2.3e-10
   TIGR01184 109 dkrpeqlsggmkqrvaiaralsirpklllldepfgaldaltreelqekllkiveearvtvlmvthd 174
                 d +++ lsgg k+rva+ar l   p+lllldep   lda +   lq      +++ + tv+ +thd
  MMETSP1137-20121227|3391_1 251 DAEVAVLSGGEKRRVALARLLLESPDLLLLDEPTNHLDAQSVAWLQT----FLQDFKGTVVAITHD 312
                 5567889********************************99999986....5589999*******9 PP

  == domain 3    score: 54.7 bits;  conditional E-value: 3.9e-17
   TIGR01184   1 lkdvdleikkgefislighsgcgkstllnliaglekptsgavilegkeitepgpdrmvvfqn.ysllpwltvrenialavdavlrdlskserreiveehielvglrea.adkrpeqlsggmkqrvaiaralsirpklllldepfgaldaltreelqekllkiveearvtvlmvth 173
                 l+dv+++i  g ++ ++g  g gk+tll +++g e p sg + ++g+ ++      +vv q   sl   ++v e+i+   d+++  +s+ + r+      +  g+++  ++kr+++lsgg ++rv +a+ l +  ++llldep   ld  t  +l+e ll+ +      +++v+h
  MMETSP1137-20121227|3391_1 434 LDDVSFSIPPGAIVGIVGPNGAGKTTLLRMLTGEEAPDSGEL-VKGQTVKL-----VVVDQSrESLANDKSVFEEITDGADEITLGTSTVKGRAY----TSWFGFKAGdQQKRVANLSGGERNRVQLAKVLRMHGNVLLLDEPTNDLDVHTMRSLEEALLEFAG----CAIVVSH 594
                 789************************************997.69999974.....5665642689999**************999998887765....4567777642789***********************************************98753....3445555 PP

>> TIGR02142  modC_ABC: molybdate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.1   0.0   0.00067     0.037      22      52 ..     125     154 ..     110     159 .. 0.84
   2 ?   -1.6   0.0       4.9   2.7e+02     298     342 ..     199     252 ..     180     256 .. 0.68
   3 !   44.2   0.0   5.8e-14   3.2e-12     129     225 ..     254     347 ..     251     370 .. 0.77
   4 !   22.0   0.0   3.3e-07   1.8e-05      15      55 ..     436     476 ..     423     496 .. 0.86
   5 !   28.3   0.0     4e-09   2.2e-07     127     205 ..     535     609 ..     531     618 .. 0.89

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 0.00067
   TIGR02142  22 gkgvtalFGrsGsGktslirliaGLtrpdeg 52 
                 g   ++l G  G+Gk++l++++aG+ +  eg
  MMETSP1137-20121227|3391_1 125 G-AKIGLVGLNGAGKSTLLKIMAGVDTEFEG 154
                 4.56899*****************9887666 PP

  == domain 2    score: -1.6 bits;  conditional E-value: 4.9
   TIGR02142 298 Learvveieese.........grvevkleaegktll..aritrkaadeLglepGkk 342
                 L a+v e ++++         g   v+ e+e k l+   r++++a++ L   pG  
  MMETSP1137-20121227|3391_1 199 LSAKVCEPMDDDameqalaelG--RVQDEIESKDLWelDRVVSRAMEALRCPPGDA 252
                 6677777777776655554333..35555566666522699999999999999976 PP

  == domain 3    score: 44.2 bits;  conditional E-value: 5.8e-14
   TIGR02142 129 pgkLsGGekqRvaigRAlLssPeLLlmDePLaaLDekrkkeilPyLerlsaelkiPilyvsHsldevarladrvvvledGr.vkaagkleevlaskdl 225
                 ++ LsGGek Rva++R lL sP+LLl+DeP   LD ++    + +L+   +++k  ++ + H+   ++     ++ le G  v  +g+  e la+k+ 
  MMETSP1137-20121227|3391_1 254 VAVLSGGEKRRVALARLLLESPDLLLLDEPTNHLDAQS----VAWLQTFLQDFKGTVVAITHDRYFLETTCKWILELERGEgVPFEGNYSEWLAKKAA 347
                 678********************************987....56777777788888888888887777777777777777545566666666666654 PP

  == domain 4    score: 22.0 bits;  conditional E-value: 3.3e-07
   TIGR02142  15 dvdlelpgkgvtalFGrsGsGktslirliaGLtrpdegeiv 55 
                 dv++++p   ++++ G  G+Gkt+l+r+++G + pd+ge+v
  MMETSP1137-20121227|3391_1 436 DVSFSIPPGAIVGIVGPNGAGKTTLLRMLTGEEAPDSGELV 476
                 7999**999******************************96 PP

  == domain 5    score: 28.3 bits;  conditional E-value: 4e-09
   TIGR02142 127 RlpgkLsGGekqRvaigRAlLssPeLLlmDePLaaLDekrkkeilPyLerlsaelkiPilyvsHsldevarladrvvvl 205
                 +++++LsGGe+ Rv +++ l  + ++Ll+DeP   LD +  +     Le+   e+    + vsH+   + rla +++  
  MMETSP1137-20121227|3391_1 535 KRVANLSGGERNRVQLAKVLRMHGNVLLLDEPTNDLDVHTMR----SLEEALLEFAGCAIVVSHDRFFLDRLATHILAA 609
                 6889*********************************98755....588888999999999****99999999999865 PP

>> TIGR01288  nodI: nodulation ABC transporter NodI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.1   0.4     1e-13   5.5e-12      15     203 ..     110     321 ..      96     337 .. 0.64
   2 !   60.7   0.4   4.4e-19   2.4e-17       5     178 ..     419     582 ..     416     607 .. 0.85

  Alignments for each domain:
  == domain 1    score: 43.1 bits;  conditional E-value: 1e-13
   TIGR01288  15 gdkvvvndlsftiaagecfgllgpngagkstiarlvlgl.......ispdeg.kitvlgepvparar.......lar.akigvvpqfdnldreft.......vrenllvfgryf.glstr...eieevipsllefarleskadvrvadlsggmkrrltlaralindpqllildepttgldpharhliwerlrsllargk.tilltthlmeeaerlcd 203
                 g + +++d+ ++   g  +gl+g ngagkst+ +++ g+       + p+ g +i  l ++   + r       la  +   +++qf++l  +         + + l   gr   +++++   e++ v+   +e  r     d++va lsgg krr++lar l++ p+ll+ldept  ld ++  + w  l+++l   k t++  th     e  c 
  MMETSP1137-20121227|3391_1 110 GSRQLLKDINLCFYPGAKIGLVGLNGAGKSTLLKIMAGVdtefegtAKPQSGaTIGYLPQEPELEGRtvqesidLAVaSSKALLAQFEELSAKVCepmdddaMEQALAELGRVQdEIESKdlwELDRVVSRAMEALRCP-PGDAEVAVLSGGEKRRVALARLLLESPDLLLLDEPTNHLDAQS--VAW--LQTFLQDFKgTVVAITHDRYFLETTCK 321
                 667788999999999********************98873222222567776345555433222333001111133313346789*****9876422222214455667888752355542226788899999888865.57999**********************************9665..455..333333222144445554444455555 PP

  == domain 2    score: 60.7 bits;  conditional E-value: 4.4e-19
   TIGR01288   5 idlvgvsksygdkvvvndlsftiaagecfgllgpngagkstiarlvlglispdegkitvlgepvpararlarakigvvpqf.dnldreftvrenllvfgryfglstreie.evipsllefarleskadvrvadlsggmkrrltlaralindpqllildepttgldpharhliwerl 178
                 i+ + +sk + ++ +++d+sf+i  g   g++gpngagk+t+ r++ g  +pd g++   g           +k+ vv q  ++l ++ +v e++      ++l t +++  +  s + f       + rva+lsgg + r+ la+ l    ++l+ldept  ld h+   + e l
  MMETSP1137-20121227|3391_1 419 IEASHLSKGFNGRTLLDDVSFSIPPGAIVGIVGPNGAGKTTLLRMLTGEEAPDSGELV-KG---------QTVKLVVVDQSrESLANDKSVFEEITDGADEITLGTSTVKgRAYTSWFGFKA--GDQQKRVANLSGGERNRVQLAKVLRMHGNVLLLDEPTNDLDVHTMRSLEEAL 582
                 888999*************************************************873.22.........3456667777527899999999999999999999999997246677777765..56678**************************************977666655 PP

>> TIGR03269  met_CoM_red_A2: methyl coenzyme M reductase system, component A2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   2.6e-05    0.0014      14      51 ..     113     150 ..     103     176 .. 0.81
   2 !   27.6   0.0     4e-09   2.2e-07     169     496 ..     257     321 ..     251     363 .. 0.55
   3 !   29.0   0.0   1.5e-09   8.4e-08       2      60 ..     420     476 ..     419     490 .. 0.91
   4 !   31.2   0.0   3.3e-10   1.8e-08     423     493 ..     535     601 ..     497     609 .. 0.89

  Alignments for each domain:
  == domain 1    score: 15.1 bits;  conditional E-value: 2.6e-05
   TIGR03269  14 evlknisleleeGevlGilGksGaGksvllhllrGlde 51 
                 + lk+i+l +  G  +G++G  GaGks ll+++ G+d 
  MMETSP1137-20121227|3391_1 113 QLLKDINLCFYPGAKIGLVGLNGAGKSTLLKIMAGVDT 150
                 67899999999999999999999999999999999884 PP

  == domain 2    score: 27.6 bits;  conditional E-value: 4e-09
   TIGR03269 169 lsGGekqrvvlarqlakeplllladeptGtldpktaklvhealkeavkeedislvltshwpeviedlsdkaillekGeiveeGepeevvakflesvsevekekevevgediikvkdvskryisvdrGvvkavdnvslevkekeifGlvGtsGaGkttlskilaGvleptsGevevrvGdewvdmtkkgvlerGrakkyiGllhqeyalyphrtvlenlteaiglelpdelakrkavivlkavGfdeekakeildklpdelseGerhrvalaqvlikeprivildeptGtmdpitkvkvaesilkareeleetfvivshdmdfvlevcd 496
                 lsGGek+rv lar l   p lll dept  ld ++   +   l                                                                                                                                                                                                                                                                       ++++ t v ++hd  f+ + c 
  MMETSP1137-20121227|3391_1 257 LSGGEKRRVALARLLLESPDLLLLDEPTNHLDAQSVAWLQTFL-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------QDFKGTVVAITHDRYFLETTCK 321
                 5555555555555555555555555555555555554443333.......................................................................................................................................................................................................................................................................3444444444444444444443 PP

  == domain 3    score: 29.0 bits;  conditional E-value: 1.5e-09
   TIGR03269   2 evenltkkfdglevlknisleleeGevlGilGksGaGksvllhllrGldeyeptsGkii 60 
                 e  +l k f+g + l ++s+ +  G ++Gi+G  GaGk+ ll++l G +   p+sG+++
  MMETSP1137-20121227|3391_1 420 EASHLSKGFNGRTLLDDVSFSIPPGAIVGIVGPNGAGKTTLLRMLTGEEA--PDSGELV 476
                 6678999****************************************887..9999876 PP

  == domain 4    score: 31.2 bits;  conditional E-value: 3.3e-10
   TIGR03269 423 klpdelseGerhrvalaqvlikeprivildeptGtmdpitkvkvaesilkareeleetfvivshdmdfvle 493
                 k   +ls Ger rv la+vl    ++++ldept  +d  t+++++e    a  e+    ++vshd  f+  
  MMETSP1137-20121227|3391_1 535 KRVANLSGGERNRVQLAKVLRMHGNVLLLDEPTNDLDVHTMRSLEE----ALLEFAGCAIVVSHDRFFLDR 601
                 56679********************************999876665....5568999********988765 PP

>> TIGR00958  3a01208: antigen peptide transporter 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0   1.3e-05    0.0007     493     526 ..     111     144 ..     107     150 .. 0.91
   2 !   40.0   0.0   6.1e-13   3.3e-11     617     703 ..     256     344 ..     250     350 .. 0.84
   3 !   44.6   0.2   2.4e-14   1.3e-12     495     687 ..     432     610 ..     429     629 .. 0.79

  Alignments for each domain:
  == domain 1    score: 15.8 bits;  conditional E-value: 1.3e-05
   TIGR00958 493 dkpvlkdLtftlepGevvalVGPsGsGKStvaal 526
                 ++++lkd+++   pG  + lVG +G GKSt   +
  MMETSP1137-20121227|3391_1 111 SRQLLKDINLCFYPGAKIGLVGLNGAGKSTLLKI 144
                 5799**************************9766 PP

  == domain 2    score: 40.0 bits;  conditional E-value: 6.1e-13
   TIGR00958 617 qlsgGqkqriAiARALvrkPrvLiLDeAtSALDaeveqllqesksaksrtvlliahrLstve.kadkilvlkkg.svvelGthkqLmek 703
                  lsgG k r+A+AR L+  P +L+LDe t  LDa++ + lq+  +  + tv+ i+h     e  ++ il l++g  v   G++++  +k
  MMETSP1137-20121227|3391_1 256 VLSGGEKRRVALARLLLESPDLLLLDEPTNHLDAQSVAWLQTFLQDFKGTVVAITHDRYFLEtTCKWILELERGeGVPFEGNYSEWLAK 344
                 69****************************************99999999999999655554167889999999556667888776555 PP

  == domain 3    score: 44.6 bits;  conditional E-value: 2.4e-14
   TIGR00958 495 pvlkdLtftlepGevvalVGPsGsGKStvaallenlYqPtgGqvllDgkplkeydhkylhrkvalVgqEPvlfsgsvreNiaYGltkte..deevtaaakaanahdFiselekgydtevgekGsqlsgGqkqriAiARALvrkPrvLiLDeAtSALDaeveqllqe.sksaksrtvlliahrLstvekadkilvlk 687
                  +l d +f++ pG +v +VGP+G GK t   +l     P++G++ + g+ +k +        v+    E +   +sv e i+ G ++ +        ++++  a +   +++ g +    ++   lsgG + r+ +A+ L  +  vL+LDe t  LD+++ + l+e   ++++ ++++  +r  + + a +il  +
  MMETSP1137-20121227|3391_1 432 TLLDDVSFSIPPGAIVGIVGPNGAGKTTLLRMLTGEEAPDSGEL-VKGQTVKLV--------VVDQSRESLANDKSVFEEITDGADEITlgT-----STVKGRAYTSWFGFKAGDQ---QKRVANLSGGERNRVQLAKVLRMHGNVLLLDEPTNDLDVHTMRSLEEaLLEFAGCAIVVSHDRFFLDRLATHILAAE 610
                 5799***************************************6.688887643........333344777799**********99887433.....3334444444445555532...345678*********************************99999999677888888888888888888888887655 PP

>> TIGR03771  anch_rpt_ABC: anchored repeat-type ABC transporter, ATP-binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.0   3.3e-06   0.00018       5      60 ..     124     173 ..     120     196 .. 0.88
   2 !   31.0   0.0   7.7e-10   4.2e-08     109     183 ..     252     323 ..     236     332 .. 0.85
   3 !   22.3   0.1   3.5e-07   1.9e-05       2      37 ..     440     475 ..     439     488 .. 0.85
   4 !   32.9   0.0   2.1e-10   1.1e-08     108     166 ..     534     590 ..     530     603 .. 0.89

  Alignments for each domain:
  == domain 1    score: 19.1 bits;  conditional E-value: 3.3e-06
   TIGR03771   5 kGellgllGpnGaGkttllrailglikvakGsvkvagkssrkgrreiGyvpqrhef 60 
                 +G  +gl+G nGaGk+tll+ + g+ ++ +G+ k ++       + iGy+pq  e+
  MMETSP1137-20121227|3391_1 124 PGAKIGLVGLNGAGKSTLLKIMAGVDTEFEGTAKPQSG------ATIGYLPQEPEL 173
                 57889********************9999999887773......68******8775 PP

  == domain 2    score: 31.0 bits;  conditional E-value: 7.7e-10
   TIGR03771 109 rpvGelsGGqrqrvlvaralavkpslllldepftGldlpsqellvelfeelagegtailmtthdlaeavatcdrv 183
                   v  lsGG+++rv +ar l   p lllldep   ld  s   l  +++++ g   +++  thd     +tc+ +
  MMETSP1137-20121227|3391_1 252 AEVAVLSGGEKRRVALARLLLESPDLLLLDEPTNHLDAQSVAWLQTFLQDFKG---TVVAITHDRYFLETTCKWI 323
                 56888****************************************99999876...6777788877666666655 PP

  == domain 3    score: 22.3 bits;  conditional E-value: 3.5e-07
   TIGR03771   2 svdkGellgllGpnGaGkttllrailglikvakGsv 37 
                 s+ +G ++g++GpnGaGkttllr + g  ++  G++
  MMETSP1137-20121227|3391_1 440 SIPPGAIVGIVGPNGAGKTTLLRMLTGEEAPDSGEL 475
                 67789******************9999887777765 PP

  == domain 4    score: 32.9 bits;  conditional E-value: 2.1e-10
   TIGR03771 108 drpvGelsGGqrqrvlvaralavkpslllldepftGldlpsqellvelfeelagegtai 166
                 ++ v +lsGG+r+rv +a+ l ++ ++llldep   ld+ ++ +l e + e+ag   ai
  MMETSP1137-20121227|3391_1 534 QKRVANLSGGERNRVQLAKVLRMHGNVLLLDEPTNDLDVHTMRSLEEALLEFAGC--AI 590
                 57899******************************************99998764..44 PP

>> TIGR02324  CP_lyasePhnL: phosphonate C-P lyase system protein PhnL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.0   9.5e-05    0.0052      21      54 ..     112     145 ..      97     164 .. 0.91
   2 !   32.0   0.0   3.1e-10   1.7e-08     148     220 ..     255     324 ..     234     328 .. 0.85
   3 !   28.0   0.0   5.2e-09   2.9e-07      14      74 ..     423     484 ..     418     495 .. 0.80
   4 !   25.4   0.0   3.2e-08   1.8e-06     148     219 ..     538     606 ..     534     610 .. 0.82

  Alignments for each domain:
  == domain 1    score: 14.1 bits;  conditional E-value: 9.5e-05
   TIGR02324  21 lpvlkevsleveaGelvalsGksGaGkstllksl 54 
                 ++ lk+++l    G  + l G  GaGkstllk +
  MMETSP1137-20121227|3391_1 112 RQLLKDINLCFYPGAKIGLVGLNGAGKSTLLKIM 145
                 67899***************************86 PP

  == domain 2    score: 32.0 bits;  conditional E-value: 3.1e-10
   TIGR02324 148 atfsGGekqRvniaraliadrPiLLLdePtasLdaanrkvvvelikeakargaaligifhdeevrelvadrel 220
                 a  sGGek+Rv +ar l+    +LLLdePt  Lda+  +    ++++ k    ++++i hd+   e+ ++  l
  MMETSP1137-20121227|3391_1 255 AVLSGGEKRRVALARLLLESPDLLLLDEPTNHLDAQSVAWLQTFLQDFK---GTVVAITHDRYFLETTCKWIL 324
                 578***************97778999********999998888888877...478999999887777766655 PP

  == domain 3    score: 28.0 bits;  conditional E-value: 5.2e-09
   TIGR02324  14 hqqgGvk.lpvlkevsleveaGelvalsGksGaGkstllkslyanYlpesgrilvrhegeiv 74 
                 h  +G + +  l++vs+++  G +v + G+ GaGk tll++l ++  p+sg+++  ++ ++v
  MMETSP1137-20121227|3391_1 423 HLSKGFNgRTLLDDVSFSIPPGAIVGIVGPNGAGKTTLLRMLTGEEAPDSGELVKGQTVKLV 484
                 5555554255689**************************************98765554444 PP

  == domain 4    score: 25.4 bits;  conditional E-value: 3.2e-08
   TIGR02324 148 atfsGGekqRvniaraliadrPiLLLdePtasLdaanrkvvvelikeakargaaligifhdeevrelvadre 219
                 a  sGGe+ Rv +a+ l ++  +LLLdePt  Ld  + +   e + e   +g+a++ + hd++  + +a++ 
  MMETSP1137-20121227|3391_1 538 ANLSGGERNRVQLAKVLRMHGNVLLLDEPTNDLDVHTMRSLEEALLEF--AGCAIV-VSHDRFFLDRLATHI 606
                 568*******************************99999888877654..688876.678877766666665 PP

>> TIGR02203  MsbA_lipidA: lipid A export permease/ATP-binding protein MsbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.0   2.4e-06   0.00013     337     380 ..     103     146 ..      90     155 .. 0.91
   2 !   29.0   0.0   1.5e-09     8e-08     451     527 ..     236     311 ..     174     347 .. 0.79
   3 !   29.0   0.0   1.5e-09     8e-08     344     409 ..     429     493 ..     416     510 .. 0.85
   4 !   23.2   0.0   8.6e-08   4.7e-06     468     527 ..     537     594 ..     526     607 .. 0.87

  Alignments for each domain:
  == domain 1    score: 18.4 bits;  conditional E-value: 2.4e-06
   TIGR02203 337 vtfrypgddrealdsislkveaGevvalvGrsGsGkstlvnllp 380
                 ++ + p+ +r+ l++i+l   +G  + lvG  G+Gkstl+++++
  MMETSP1137-20121227|3391_1 103 LSKTLPDGSRQLLKDINLCFYPGAKIGLVGLNGAGKSTLLKIMA 146
                 67889999********************************9875 PP

  == domain 2    score: 29.0 bits;  conditional E-value: 1.5e-09
   TIGR02203 451 dlvdklpeGldtevGen.gskLsGGqRqRlaiaRallkdaPiLiLDeatsaLDneseRlvqaaLerlmkgRttlviah 527
                  +v +  e l  + G+   + LsGG + R+a+aR ll    +L+LDe t  LD+ s   +q  L+ +    t + i h
  MMETSP1137-20121227|3391_1 236 RVVSRAMEALRCPPGDAeVAVLSGGEKRRVALARLLLESPDLLLLDEPTNHLDAQSVAWLQTFLQDFK--GTVVAITH 311
                 566666777777777651467**************************************999999874..35555555 PP

  == domain 3    score: 29.0 bits;  conditional E-value: 1.5e-09
   TIGR02203 344 ddrealdsislkveaGevvalvGrsGsGkstlvnllpRFyepdsGeillDgvdladlkLasLRrqv 409
                 ++r  ld++s+++ +G +v +vG+ G+Gk+tl+++l+    pdsGe++  g+ ++ + +++ R+ +
  MMETSP1137-20121227|3391_1 429 NGRTLLDDVSFSIPPGAIVGIVGPNGAGKTTLLRMLTGEEAPDSGELV-KGQTVKLVVVDQSRESL 493
                 46789****************************************965.67777766666666655 PP

  == domain 4    score: 23.2 bits;  conditional E-value: 8.6e-08
   TIGR02203 468 gskLsGGqRqRlaiaRallkdaPiLiLDeatsaLDneseRlvqaaLerlmkgRttlviah 527
                  ++LsGG R R+ +a+ l     +L+LDe t  LD    R + +aL ++     ++v++h
  MMETSP1137-20121227|3391_1 537 VANLSGGERNRVQLAKVLRMHGNVLLLDEPTNDLDVHTMRSLEEALLEFA--GCAIVVSH 594
                 589******************************************96543..34555555 PP

>> TIGR02314  ABC_MetN: D-methionine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   0.0   0.00012    0.0065      13      60 ..     109     154 ..      98     169 .. 0.81
   2 !   31.2   0.0   4.5e-10   2.5e-08     135     238 ..     251     351 ..     221     364 .. 0.88
   3 !   28.2   0.0   3.6e-09     2e-07      19      68 ..     432     480 ..     418     504 .. 0.84
   4 !   23.6   0.0   8.9e-08   4.9e-06     136     185 ..     535     584 ..     516     600 .. 0.90

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 0.00012
   TIGR02314  13 qgdkkikaldnvslfvpkgqifgvigasgagkstlircvnllekptsg 60 
                  g+++   l++++l    g  +g++g  gagkstl++ +  +++  +g
  MMETSP1137-20121227|3391_1 109 DGSRQ--LLKDINLCFYPGAKIGLVGLNGAGKSTLLKIMAGVDTEFEG 154
                 55554..59******999******************988766665555 PP

  == domain 2    score: 31.2 bits;  conditional E-value: 4.5e-10
   TIGR02314 135 dsypsnlsggqkqrvaiaralasepkvllcdeatsaldpattqsilellkeinrrlgltillithemdvvkricdevavidkgelie.kgtvseifshpktelak 238
                 d+  + lsgg+k+rva+ar l   p +ll de t  ld  +   + ++l++     + t++ ith+   +   c+ +  +++ge +  +g  se +++  ++la 
  MMETSP1137-20121227|3391_1 251 DAEVAVLSGGEKRRVALARLLLESPDLLLLDEPTNHLDAQSVAWLQTFLQDF----KGTVVAITHDRYFLETTCKWILELERGEGVPfEGNYSEWLAKKAAKLAA 351
                 566688********************************98888888888776....56899********************999885367888888888888875 PP

  == domain 3    score: 28.2 bits;  conditional E-value: 3.6e-09
   TIGR02314  19 kaldnvslfvpkgqifgvigasgagkstlircvnllekptsgavivdgkd 68 
                 + ld+vs+ +p g i+g++g  gagk+tl+r +   e p sg++ v g+ 
  MMETSP1137-20121227|3391_1 432 TLLDDVSFSIPPGAIVGIVGPNGAGKTTLLRMLTGEEAPDSGEL-VKGQT 480
                 569***************************************85.55654 PP

  == domain 4    score: 23.6 bits;  conditional E-value: 8.9e-08
   TIGR02314 136 sypsnlsggqkqrvaiaralasepkvllcdeatsaldpattqsilellke 185
                    +nlsgg+++rv +a+ l  +  vll de t  ld  t +s+ e l e
  MMETSP1137-20121227|3391_1 535 KRVANLSGGERNRVQLAKVLRMHGNVLLLDEPTNDLDVHTMRSLEEALLE 584
                 4569***************************************9887765 PP

>> TIGR00955  3a01204: pigment precursor permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.1   1.4e-05   0.00077      26      74 ..      96     148 ..      70     159 .. 0.71
   2 !   36.5   0.0   8.5e-12   4.7e-10     163     209 ..     253     299 ..     243     311 .. 0.85
   3 !   23.5   0.0   7.1e-08   3.9e-06      36      79 ..     429     472 ..     413     491 .. 0.82
   4 !   21.8   0.0   2.4e-07   1.3e-05     161     212 ..     534     585 ..     529     593 .. 0.85

  Alignments for each domain:
  == domain 1    score: 16.0 bits;  conditional E-value: 1.4e-05
   TIGR00955  26 rleealarkk....pekellknvsGvaksGellAvlGsSGaGKtTLlnalafr 74 
                 +  + l  +k    + ++llk++   +++G  + ++G  GaGK+TLl+++a  
  MMETSP1137-20121227|3391_1  96 FIFTILGLSKtlpdGSRQLLKDINLCFYPGAKIGLVGLNGAGKSTLLKIMAGV 148
                 33333333336677899********************************9975 PP

  == domain 2    score: 36.5 bits;  conditional E-value: 8.5e-12
   TIGR00955 163 rvkglSgGerkRlalaselltdPilLfcDEPTsGLDsfsaasvvkvL 209
                 +v +lSgGe++R+ala  ll+ P lL++DEPT  LD+ s a +   L
  MMETSP1137-20121227|3391_1 253 EVAVLSGGEKRRVALARLLLESPDLLLLDEPTNHLDAQSVAWLQTFL 299
                 4679*********************************9976655555 PP

  == domain 3    score: 23.5 bits;  conditional E-value: 7.1e-08
   TIGR00955  36 pekellknvsGvaksGellAvlGsSGaGKtTLlnalafrsekgl 79 
                 + ++ll +vs  + +G ++ ++G+ GaGKtTLl +l+  ++ ++
  MMETSP1137-20121227|3391_1 429 NGRTLLDDVSFSIPPGAIVGIVGPNGAGKTTLLRMLTGEEAPDS 472
                 7789********************************99888765 PP

  == domain 4    score: 21.8 bits;  conditional E-value: 2.4e-07
   TIGR00955 161 pgrvkglSgGerkRlalaselltdPilLfcDEPTsGLDsfsaasvvkvLkkl 212
                 + rv  lSgGer R+ la+ l     +L++DEPT  LD  +  s+ ++L ++
  MMETSP1137-20121227|3391_1 534 QKRVANLSGGERNRVQLAKVLRMHGNVLLLDEPTNDLDVHTMRSLEEALLEF 585
                 457789********************************98887776666665 PP

>> TIGR03005  ectoine_ehuA: ectoine/hydroxyectoine ABC transporter, ATP-binding protein EhuA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.4   0.0   0.00026     0.014      14      56 ..     113     155 ..     106     174 .. 0.88
   2 !   28.2   0.0     4e-09   2.2e-07     144     223 ..     254     329 ..     233     344 .. 0.84
   3 !   28.1   0.0   4.1e-09   2.3e-07       1      57 [.     419     475 ..     419     499 .. 0.89
   4 !   22.6   0.0   2.1e-07   1.1e-05     141     183 ..     534     576 ..     493     607 .. 0.84

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 0.00026
   TIGR03005  14 tvldglelevaaGekvaliGpsGsGkstilrilmtletideGs 56 
                 ++l++++l   +G k+ l+G  G+Gkst+l+i+  ++t  eG+
  MMETSP1137-20121227|3391_1 113 QLLKDINLCFYPGAKIGLVGLNGAGKSTLLKIMAGVDTEFEGT 155
                 5788999999**********************99988877776 PP

  == domain 2    score: 28.2 bits;  conditional E-value: 4e-09
   TIGR03005 144 paqlsGGqkqrvaiaralalrpkvllfdevtsaldpelveevlnvlrrlasetdltmllvthemgfarefadrvlffdkG 223
                  a lsGG+k+rva+ar l  +p +ll+de+t  ld + v  +    + + ++ + t++ +th+  f +  +  +l +++G
  MMETSP1137-20121227|3391_1 254 VAVLSGGEKRRVALARLLLESPDLLLLDEPTNHLDAQSVAWL----QTFLQDFKGTVVAITHDRYFLETTCKWILELERG 329
                 578*********************************988654....5555667789999999988888777777777776 PP

  == domain 3    score: 28.1 bits;  conditional E-value: 4.1e-09
   TIGR03005   1 vrisdvtkrfgeltvldglelevaaGekvaliGpsGsGkstilrilmtletideGsi 57 
                 ++ s+++k f+  t+ld++++++ +G  v ++Gp G+Gk+t+lr+l   e+ d G++
  MMETSP1137-20121227|3391_1 419 IEASHLSKGFNGRTLLDDVSFSIPPGAIVGIVGPNGAGKTTLLRMLTGEEAPDSGEL 475
                 5778999***************************************99999999986 PP

  == domain 4    score: 22.6 bits;  conditional E-value: 2.1e-07
   TIGR03005 141 dalpaqlsGGqkqrvaiaralalrpkvllfdevtsaldpelve 183
                 ++  a+lsGG+++rv +a+ l ++ +vll+de+t  ld + + 
  MMETSP1137-20121227|3391_1 534 QKRVANLSGGERNRVQLAKVLRMHGNVLLLDEPTNDLDVHTMR 576
                 445689********************************87654 PP

>> TIGR01978  sufC: FeS assembly ATPase SufC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.0     2e-06   0.00011      13      50 ..     112     149 ..     103     159 .. 0.92
   2 !   21.9   0.0     4e-07   2.2e-05     145     208 ..     257     317 ..     218     330 .. 0.87
   3 !   29.5   0.0   1.8e-09   9.8e-08       5      52 ..     423     470 ..     419     494 .. 0.83
   4 !   19.4   0.0   2.2e-06   0.00012     145     211 ..     540     603 ..     528     617 .. 0.87

  Alignments for each domain:
  == domain 1    score: 19.5 bits;  conditional E-value: 2e-06
   TIGR01978  13 keiLkglnlevkkGevhaimGpnGsGkstLskvlaghe 50 
                 +++Lk++nl   +G+   ++G nG+GkstL k++ag +
  MMETSP1137-20121227|3391_1 112 RQLLKDINLCFYPGAKIGLVGLNGAGKSTLLKIMAGVD 149
                 789*******************************9965 PP

  == domain 2    score: 21.9 bits;  conditional E-value: 4e-07
   TIGR01978 145 fsGGekkrneilqlallePklaiLDeiDsGlDvDalkivaegvnklreeekalliithyerlle 208
                  sGGek+r  + +l+l +P+l +LDe    lD  ++  + + +++++    +++ ith + +le
  MMETSP1137-20121227|3391_1 257 LSGGEKRRVALARLLLESPDLLLLDEPTNHLDAQSVAWLQTFLQDFKG---TVVAITHDRYFLE 317
                 69*********************************9999999988875...5778899876665 PP

  == domain 3    score: 29.5 bits;  conditional E-value: 1.8e-09
   TIGR01978   5 dlhvsvedkeiLkglnlevkkGevhaimGpnGsGkstLskvlagheky 52 
                 +l+   + +++L++++ ++ +G+++ i+GpnG+Gk tL ++l+g+e+ 
  MMETSP1137-20121227|3391_1 423 HLSKGFNGRTLLDDVSFSIPPGAIVGIVGPNGAGKTTLLRMLTGEEAP 470
                 5666778999**********************************9864 PP

  == domain 4    score: 19.4 bits;  conditional E-value: 2.2e-06
   TIGR01978 145 fsGGekkrneilqlallePklaiLDeiDsGlDvDalkivaegvnklreeekalliithyerllelik 211
                  sGGe+ r ++ +++ ++ ++ +LDe    lDv +++ + e + +++      ++++h + +l+ ++
  MMETSP1137-20121227|3391_1 540 LSGGERNRVQLAKVLRMHGNVLLLDEPTNDLDVHTMRSLEEALLEFA---GCAIVVSHDRFFLDRLA 603
                 7*************************************999988776...56789999988888776 PP

>> TIGR01187  potA: polyamine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.1   0.1    0.0024      0.13       1      26 [.     130     155 ..     130     169 .. 0.89
   2 !   38.5   0.0   2.8e-12   1.5e-10      94     209 ..     250     362 ..     230     385 .. 0.78
   3 !   43.3   0.4   9.3e-14   5.1e-12       1     139 [.     449     578 ..     449     597 .. 0.79

  Alignments for each domain:
  == domain 1    score: 9.1 bits;  conditional E-value: 0.0024
   TIGR01187   1 lLGpsGsGkttlLrllaGleeldsGk 26 
                 l+G  G+Gk+tlL+++aG+++  +G 
  MMETSP1137-20121227|3391_1 130 LVGLNGAGKSTLLKIMAGVDTEFEGT 155
                 67999**************9987775 PP

  == domain 2    score: 38.5 bits;  conditional E-value: 2.8e-12
   TIGR01187  94 akrkpsqlsGGqrqrvalaravvkkPkiLLlDeplsaLDkkLrdqmqlelkalqeklGitvvlvthDqeealtmsdriavlrkGkia.qigepeeiyeePanefvarfiGeinvfea 209
                 ++ ++  lsGG ++rvalar + + P++LLlDep   LD +    +q+ l++++     tvv +thD+    t    i  l++G+ +   g+  e  ++ a++ +a+  Ge n+ ++
  MMETSP1137-20121227|3391_1 250 GDAEVAVLSGGEKRRVALARLLLESPDLLLLDEPTNHLDAQSVAWLQTFLQDFK----GTVVAITHDRYFLETTCKWILELERGEGVpFEGNYSEWLAKKAAKLAAEKKGEENMAKM 362
                 5667788********************************999999888887776....499******98777777777777777644144555666666666666666666666555 PP

  == domain 3    score: 43.3 bits;  conditional E-value: 9.3e-14
   TIGR01187   1 lLGpsGsGkttlLrllaGleeldsGkilldgedvtevp.aekrsvnvvfqsyaLfPhmtveenvafgLkmrkvpkaeikervkeaLelvqleefakrkpsqlsGGqrqrvalaravvkkPkiLLlDeplsaLDkkLrdqm 139
                 ++Gp G+GkttlLr+l G e +dsG+++  g+ v  v   + r         +L    +v+e +  g     ++ +++k r        +  +  ++++ +lsGG r rv la+ +  + ++LLlDep   LD +    +
  MMETSP1137-20121227|3391_1 449 IVGPNGAGKTTLLRMLTGEEAPDSGELVK-GQTVKLVVvDQSR--------ESLANDKSVFEEITDGADEITLGTSTVKGRAYTSWFGFKAGDQ-QKRVANLSGGERNRVQLAKVLRMHGNVLLLDEPTNDLDVHTMRSL 578
                 68************************875.5555544303333........3577899***********************9998888887775.66789*********************************8643333 PP

>> TIGR01277  thiQ: thiamine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.0   1.1e-05   0.00062      17      56 ..     118     157 ..     110     211 .. 0.86
   2 !   28.6   0.0   3.9e-09   2.1e-07     129     194 ..     257     318 ..     251     331 .. 0.83
   3 !   43.4   0.1   1.1e-13   6.1e-12      17     162 ..     437     573 ..     427     611 .. 0.78

  Alignments for each domain:
  == domain 1    score: 17.3 bits;  conditional E-value: 1.1e-05
   TIGR01277  17 fdlsveaGervailGesGaGkstllnliaGflepasGeik 56 
                  +l    G ++ ++G  GaGkstll+++aG  +  +G+ k
  MMETSP1137-20121227|3391_1 118 INLCFYPGAKIGLVGLNGAGKSTLLKIMAGVDTEFEGTAK 157
                 67788889**********************9998888765 PP

  == domain 2    score: 28.6 bits;  conditional E-value: 3.9e-09
   TIGR01277 129 lsGGqrqrvalarclvrekpillldepfsaldpklreemlalvkkladekkltlllvthslsdaaa 194
                 lsGG+++rvalar l++   +llldep   ld +     +a +++  ++ k t++ +th+   + +
  MMETSP1137-20121227|3391_1 257 LSGGEKRRVALARLLLESPDLLLLDEPTNHLDAQ----SVAWLQTFLQDFKGTVVAITHDRYFLET 318
                 9***************************999975....6788899999999999999998665555 PP

  == domain 3    score: 43.4 bits;  conditional E-value: 1.1e-13
   TIGR01277  17 fdlsveaGervailGesGaGkstllnliaGflepasGeikvndkdhtrsapyerpvsmlfqennlfahltv.rqniglGlkpglklnavqkekvedvarqvGiadylerlpeelsGGqrqrvalarclvrekpillldepfsaldpk 162
                  ++s+  G +v i+G+ GaGk+tll +++G + p sGe+   +  ++ +         l +++ +f  +t  +++i+lG   ++k  a               +d  +r+  +lsGG+r+rv la+ l  +  +llldep   ld +
  MMETSP1137-20121227|3391_1 437 VSFSIPPGAIVGIVGPNGAGKTTLLRMLTGEEAPDSGELVKGQTVKLVVVDQS--RESLANDKSVFEEITDgADEITLGTS-TVKGRAYT------SWFGFKAGDQQKRVA-NLSGGERNRVQLAKVLRMHGNVLLLDEPTNDLDVH 573
                 6778899*******************************965444444444444..45688999*****9953789***965.45555443......334444567778875.6*******************************964 PP

>> TIGR02633  xylG: D-xylose ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   0.0   4.3e-07   2.4e-05      13      51 ..     111     149 ..      98     160 .. 0.86
   2 !   21.5   0.0   2.7e-07   1.5e-05     392     437 ..     245     290 ..     211     310 .. 0.73
   3 !   24.5   0.0   3.2e-08   1.8e-06       3      49 ..     420     466 ..     418     494 .. 0.92
   4 !   21.4   0.0     3e-07   1.6e-05     395     443 ..     531     579 ..     515     597 .. 0.81

  Alignments for each domain:
  == domain 1    score: 20.8 bits;  conditional E-value: 4.3e-07
   TIGR02633  13 gvkaldnidlklraGeivslcGenGaGkstlmkvlsgvy 51 
                 + + l++i+l   +G  ++l G nGaGkstl+k+++gv 
  MMETSP1137-20121227|3391_1 111 SRQLLKDINLCFYPGAKIGLVGLNGAGKSTLLKIMAGVD 149
                 4567999******************************95 PP

  == domain 2    score: 21.5 bits;  conditional E-value: 2.7e-07
   TIGR02633 392 vktaspdlpiarlsGGnqqkavlakllllnprvlildeptrGvdvG 437
                 +++   d  +a lsGG++++  la+lll +p +l+ldept  +d  
  MMETSP1137-20121227|3391_1 245 LRCPPGDAEVAVLSGGEKRRVALARLLLESPDLLLLDEPTNHLDAQ 290
                 344556788999****************************999975 PP

  == domain 3    score: 24.5 bits;  conditional E-value: 3.2e-08
   TIGR02633   3 emkgivkkfggvkaldnidlklraGeivslcGenGaGkstlmkvlsg 49 
                 e  ++ k f+g + ld++++ + +G iv++ G nGaGk+tl+++l+g
  MMETSP1137-20121227|3391_1 420 EASHLSKGFNGRTLLDDVSFSIPPGAIVGIVGPNGAGKTTLLRMLTG 466
                 678999**************************************997 PP

  == domain 4    score: 21.4 bits;  conditional E-value: 3e-07
   TIGR02633 395 aspdlpiarlsGGnqqkavlakllllnprvlildeptrGvdvGakyeiy 443
                  + +  +a+lsGG++++  lak+l ++ +vl+ldept  +dv +   + 
  MMETSP1137-20121227|3391_1 531 GDQQKRVANLSGGERNRVQLAKVLRMHGNVLLLDEPTNDLDVHTMRSLE 579
                 55566799*********************************98765554 PP

>> TIGR01193  bacteriocin_ABC: ABC-type bacteriocin transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   1.6e-05   0.00086     487     530 ..     112     155 ..      79     195 .. 0.86
   2 !   23.7   0.0   6.1e-08   3.3e-06     609     698 ..     254     344 ..     227     348 .. 0.82
   3 !   18.7   0.0   1.9e-06   0.00011     480     534 ..     423     478 ..     413     494 .. 0.80
   4 !   24.8   0.0   2.7e-08   1.5e-06     608     679 ..     536     607 ..     525     624 .. 0.84

  Alignments for each domain:
  == domain 1    score: 15.7 bits;  conditional E-value: 1.6e-05
   TIGR01193 487 sevledislkikknekitlvGlsGsGkstlakllvkffqaesGe 530
                 +++l+di+l      ki lvGl G+Gkstl k++ +   + +G+
  MMETSP1137-20121227|3391_1 112 RQLLKDINLCFYPGAKIGLVGLNGAGKSTLLKIMAGVDTEFEGT 155
                 6899******************************9876555554 PP

  == domain 2    score: 23.7 bits;  conditional E-value: 6.1e-08
   TIGR01193 609 assisgGqkqrlalarallsdskvlildestsnldlltekkivenllklkdktiifvah.rlsvakksdkiivldeGkii.eqGshkellke 698
                  + +sgG k+r+alar ll   ++l+lde t +ld       ++ +l+  + t++ ++h r  +    + i+ l++G+ +  +G+++e l++
  MMETSP1137-20121227|3391_1 254 VAVLSGGEKRRVALARLLLESPDLLLLDEPTNHLDAQSVAW-LQTFLQDFKGTVVAITHdRYFLETTCKWILELERGEGVpFEGNYSEWLAK 344
                 5679*******************************977655.55555555789999998566677777889999999755257888887766 PP

  == domain 3    score: 18.7 bits;  conditional E-value: 1.9e-06
   TIGR01193 480 sysyGy.gsevledislkikknekitlvGlsGsGkstlakllvkffqaesGeilln 534
                 + s G+ g+ +l+d+s++i     + +vG  G+Gk+tl ++l +   ++sGe+  +
  MMETSP1137-20121227|3391_1 423 HLSKGFnGRTLLDDVSFSIPPGAIVGIVGPNGAGKTTLLRMLTGEEAPDSGELVKG 478
                 445677247789*******************************9999999997654 PP

  == domain 4    score: 24.8 bits;  conditional E-value: 2.7e-08
   TIGR01193 608 eassisgGqkqrlalarallsdskvlildestsnldlltekkivenllklkdktiifvahrlsvakksdkii 679
                   +++sgG + r+ la+ l  + +vl+lde t +ld+ t + + e ll++   +i+    r+ + + + +i+
  MMETSP1137-20121227|3391_1 536 RVANLSGGERNRVQLAKVLRMHGNVLLLDEPTNDLDVHTMRSLEEALLEFAGCAIVVSHDRFFLDRLATHIL 607
                 5689**********************************************7777665555666666555555 PP

>> TIGR00954  3a01203: peroxysomal long chain fatty acyl transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.2   0.0   4.3e-15   2.4e-13     462     640 ..     107     313 ..      60     332 .. 0.72
   2 !   21.3   0.0   3.1e-07   1.7e-05     464     501 ..     429     466 ..     418     490 .. 0.83
   3 !   14.1   0.0   4.5e-05    0.0025     583     660 .]     539     617 ..     530     617 .. 0.93

  Alignments for each domain:
  == domain 1    score: 47.2 bits;  conditional E-value: 4.3e-15
   TIGR00954 462 tPeg.dvlieeLsfevksGnhlLiiGPnGcGKsslfRilgelWPvygglltkpeegklFyvPqrPYmslgtlRdqiiYPd.ssedfker..........glsdkdLeqiLeevkLedlleregg....................wdavq.....dWkdvLsgGekqRiamARlfyHkPkfavLDEctsAvsvdvEdklyelakevgitllsvshrk 640
                  P+g   l++++++    G ++ ++G nG GKs l +i++++   + g+   ++   + y+Pq P +  +t+ + i     ss+ +  +           + d  +eq L e+                               ++a++         vLsgGek R+a+ARl+   P   +LDE t+ +  +    l   +++++ t+++++h +
  MMETSP1137-20121227|3391_1 107 LPDGsRQLLKDINLCFYPGAKIGLVGLNGAGKSTLLKIMAGVDTEFEGTAKPQSGATIGYLPQEPELEGRTVQESIDLAVaSSKALLAQfeelsakvcePMDDDAMEQALAELG---------RvqdeieskdlweldrvvsraMEALRcppgdAEVAVLSGGEKRRVALARLLLESPDLLLLDEPTNHLDAQSVAWLQTFLQDFKGTVVAITHDR 313
                 56652468999999999********************************9999999*******************976551444444445545666777455555555554432.........112222234445666666677555542222134579*****************************9999999999999999999999999965 PP

  == domain 2    score: 21.3 bits;  conditional E-value: 3.1e-07
   TIGR00954 464 egdvlieeLsfevksGnhlLiiGPnGcGKsslfRilge 501
                 +g  l++++sf ++ G  + i+GPnG GK  l R+l++
  MMETSP1137-20121227|3391_1 429 NGRTLLDDVSFSIPPGAIVGIVGPNGAGKTTLLRMLTG 466
                 7899*******************************976 PP

  == domain 3    score: 14.1 bits;  conditional E-value: 4.5e-05
   TIGR00954 583 vLsgGekqRiamARlfyHkPkfavLDEctsAvsvdvEdklyelakevgitllsvsh.rksLwkyHeylLkldgkGkykf 660
                  LsgGe+ R+ +A+++  + +  +LDE t+ + v     l e++ e+    + vsh r  L +  +++L  +g+G++ f
  MMETSP1137-20121227|3391_1 539 NLSGGERNRVQLAKVLRMHGNVLLLDEPTNDLDVHTMRSLEEALLEFAGCAIVVSHdRFFLDRLATHILAAEGDGQWYF 617
                 69***************99***************************999999999945578899*************87 PP

>> TIGR02323  CP_lyasePhnK: phosphonate C-P lyase system protein PhnK
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.4   0.0   2.5e-10   1.4e-08       5     197 ..      99     311 ..      95     332 .. 0.70
   2 !   29.5   0.0   1.9e-09   1.1e-07       3      59 ..     418     476 ..     416     504 .. 0.87
   3 !   13.0   0.0   0.00021     0.011     138     198 ..     536     597 ..     509     614 .. 0.73

  Alignments for each domain:
  == domain 1    score: 32.4 bits;  conditional E-value: 2.5e-10
   TIGR02323   5 evselsksy..gskkgcr.vsf.lypGevlgivGesGsGkstllkalaarlladaGevtyesrsrelellalseaerrlllrt.ewGlvhqnpr.GlrmevsaG......anigerllavgarhyGkiraaakw.lekv...eidaari.....kpaafsGGmqqrlqiarnlvtrprlvfm.eptGGlvsvqarllllrglvrelglaviivth 197
                 ++ +lsk+   gs++ ++ +++ +ypG  +g+vG  G+Gkstllk +a+  +  +G+++ +s  +   l + +e e r +  + +  +   ++      e+sa        +  e+ la   r   +i ++  w l++v    ++a r      + a +sGG ++r+ +ar l+  p l+++ ept  l +    +  l++++++++ +v+ +th
  MMETSP1137-20121227|3391_1  99 TILGLSKTLpdGSRQLLKdINLcFYPGAKIGLVGLNGAGKSTLLKIMAGVDTEFEGTAKPQSGATIGYLPQEPELEGRTVQESiDLAVASSKALlAQFEELSAKvcepmdDDAMEQALAELGRVQDEIESKDLWeLDRVvsrAMEALRCppgdaEVAVLSGGEKRRVALARLLLESPDLLLLdEPTNHLDAQS--VAWLQTFLQDFKGTVVAITH 311
                 566677765325666666799889*************************999999**999999999999999999999877662444444444433334455531100113344444554445555555556676677633234555664444455789**********************99***9984322..23567788888888888888 PP

  == domain 2    score: 29.5 bits;  conditional E-value: 1.9e-09
   TIGR02323   3 llevselsksygskkgcr.vsf.lypGevlgivGesGsGkstllkalaarlladaGevt 59 
                 ++e s+lsk + +++ +  vsf + pG ++givG  G+Gk+tll  l+++ ++d+Ge+ 
  MMETSP1137-20121227|3391_1 418 VIEASHLSKGFNGRTLLDdVSFsIPPGAIVGIVGPNGAGKTTLLRMLTGEEAPDSGELV 476
                 677899*****99999989***9*********************************974 PP

  == domain 3    score: 13.0 bits;  conditional E-value: 0.00021
   TIGR02323 138 kpaafsGGmqqrlqiarnlvtrprlvfm.eptGGlvsvqarllllrglvrelglaviivth..l 198
                 + a++sGG ++r+q+a++l  + +++++ ept  l     r  l  +l+ e+  ++i+v+h  +
  MMETSP1137-20121227|3391_1 536 RVANLSGGERNRVQLAKVLRMHGNVLLLdEPTNDLDVHTMRS-LEEALL-EFAGCAIVVSHdrF 597
                 45789*****************9999998****994444443.444554.46666677777444 PP

>> TIGR01186  proV: glycine betaine/L-proline transport ATP binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.1   0.0    0.0012     0.067       4      39 ..     110     145 ..     108     154 .. 0.92
   2 !   26.4   0.0   1.3e-08   7.3e-07     130     189 ..     257     312 ..     240     383 .. 0.89
   3 !   18.4   0.0   3.6e-06    0.0002       9      57 ..     434     481 ..     427     500 .. 0.83
   4 !   19.4   0.0   1.8e-06   9.7e-05     128     175 ..     538     585 ..     529     606 .. 0.87

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 0.0012
   TIGR01186   4 GlklgvndvdleieeGeiiviiGlsGsGkstlvrll 39 
                 G+++ ++d++l  + G  i ++Gl G+Gkstl++++
  MMETSP1137-20121227|3391_1 110 GSRQLLKDINLCFYPGAKIGLVGLNGAGKSTLLKIM 145
                 7778899***************************97 PP

  == domain 2    score: 26.4 bits;  conditional E-value: 1.3e-08
   TIGR01186 130 lsGGmqqrvGlaralaaePdlllmdeafsaldPlirdelqdelvklqkklqktivfithd 189
                 lsGG ++rv lar l   Pdlll+de+   ld      lq  l+++    + t+v ithd
  MMETSP1137-20121227|3391_1 257 LSGGEKRRVALARLLLESPDLLLLDEPTNHLDAQSVAWLQTFLQDF----KGTVVAITHD 312
                 9********************************9999999877665....5789999999 PP

  == domain 3    score: 18.4 bits;  conditional E-value: 3.6e-06
   TIGR01186   9 vndvdleieeGeiiviiGlsGsGkstlvrllnrliePtaGkilidGedi 57 
                 ++dv+++i  G i+ i+G+ G+Gk+tl+r+l     P +G++ + G+++
  MMETSP1137-20121227|3391_1 434 LDDVSFSIPPGAIVGIVGPNGAGKTTLLRMLTGEEAPDSGEL-VKGQTV 481
                 689****************************99999999985.556554 PP

  == domain 4    score: 19.4 bits;  conditional E-value: 1.8e-06
   TIGR01186 128 delsGGmqqrvGlaralaaePdlllmdeafsaldPlirdelqdelvkl 175
                  +lsGG + rv la+ l ++ ++ll+de+   ld  +  +l + l+++
  MMETSP1137-20121227|3391_1 538 ANLSGGERNRVQLAKVLRMHGNVLLLDEPTNDLDVHTMRSLEEALLEF 585
                 58***************************************9999875 PP

>> TIGR01192  chvA: glucan exporter ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.0     0.029       1.6     347     384 ..     111     148 ..     102     161 .. 0.87
   2 !   18.2   0.0   3.1e-06   0.00017     471     508 ..     256     293 ..     249     328 .. 0.88
   3 !   49.3   0.1   1.2e-15   6.5e-14     343     513 ..     427     581 ..     415     595 .. 0.82

  Alignments for each domain:
  == domain 1    score: 5.0 bits;  conditional E-value: 0.029
   TIGR01192 347 ssqgvrdvsfeakagqtvaivgptgagkttlinllqrv 384
                 s+q ++d+ +    g  + +vg  gagk+tl+ ++  v
  MMETSP1137-20121227|3391_1 111 SRQLLKDINLCFYPGAKIGLVGLNGAGKSTLLKIMAGV 148
                 67888999999999******************998776 PP

  == domain 2    score: 18.2 bits;  conditional E-value: 3.1e-06
   TIGR01192 471 rlsggerqrlaiarailknapilvldeatsaldvetea 508
                  lsgge++r+a+ar +l    +l+lde t  ld ++ a
  MMETSP1137-20121227|3391_1 256 VLSGGEKRRVALARLLLESPDLLLLDEPTNHLDAQSVA 293
                 59*******************************88765 PP

  == domain 3    score: 49.3 bits;  conditional E-value: 1.2e-15
   TIGR01192 343 efanssqgvrdvsfeakagqtvaivgptgagkttlinllqrvydpksgqilidgvdiatvtreslrksiatvfqdagllnrsirenirlgredatdeevveaakaaaasdfiekrlkgydtlvgergnrlsggerqrlaiarailknapilvldeatsaldvetearvkda 513
                 +f n +  + dvsf +  g  v ivgp gagkttl+ +l     p+sg++ + g  ++ v  +  r+s+a         ++s+ e+i+ g ++ t+     + k  a + +   +  +      +r ++lsgger+r+ +a+ +     +l+lde t  ldv t   + +a
  MMETSP1137-20121227|3391_1 427 GF-NGRTLLDDVSFSIPPGAIVGIVGPNGAGKTTLLRMLTGEEAPDSGEL-VKGQTVKLVVVDQSRESLAN--------DKSVFEEITDGADEITLGTS--TVKGRAYTSWFGFKAGDQ----QKRVANLSGGERNRVQLAKVLRMHGNVLLLDEPTNDLDVHTMRSLEEA 581
                 55.5556688**************************************95.79999999999999****96........78888999888877776543..334444444544444443....367789**********************************98776666 PP

>> TIGR01271  CFTR_protein: cystic fibrosis transmembrane conductor regulator (CFTR)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   0.0   3.5e-05    0.0019    1222    1265 ..     102     145 ..      64     187 .. 0.76
   2 !   16.7   0.0   3.7e-06    0.0002    1352    1412 ..     255     314 ..     218     345 .. 0.78
   3 !   20.0   0.0   3.9e-07   2.1e-05    1230    1266 ..     429     465 ..     402     494 .. 0.82
   4 !   15.1   0.0   1.2e-05   0.00064     548     606 ..     539     601 ..     532     642 .. 0.72

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 3.5e-05
   TIGR01271 1222 dltakyteagravlqdlsfsveagqrvgllgrtgsgkstllsal 1265
                  +l+    ++ r +l+d+ ++  +g ++gl+g  g+gkstll  +
  MMETSP1137-20121227|3391_1  102 GLSKTLPDGSRQLLKDINLCFYPGAKIGLVGLNGAGKSTLLKIM 145 
                  45555566778888888888888888888888888888888654 PP

  == domain 2    score: 16.7 bits;  conditional E-value: 3.7e-06
   TIGR01271 1352 yvlsnghkqlmclarsilskakillldepsafldpvtlqiirktlkqafsnctvilsehrv 1412
                   vls g k+ + lar +l    +llldep+ +ld  ++  ++ t+ q f    v ++  r 
  MMETSP1137-20121227|3391_1  255 AVLSGGEKRRVALARLLLESPDLLLLDEPTNHLDAQSVAWLQ-TFLQDFKGTVVAITHDRY 314 
                  578888888888888888888888888888888887777664.555667666666666554 PP

  == domain 3    score: 20.0 bits;  conditional E-value: 3.9e-07
   TIGR01271 1230 agravlqdlsfsveagqrvgllgrtgsgkstllsall 1266
                  +gr++l+d+sfs+ +g  vg++g  g+gk+tll  l 
  MMETSP1137-20121227|3391_1  429 NGRTLLDDVSFSIPPGAIVGIVGPNGAGKTTLLRMLT 465 
                  799****************************998765 PP

  == domain 4    score: 15.1 bits;  conditional E-value: 1.2e-05
   TIGR01271 548 tlsggqrarislaravykdadlylldspfsyldvvtekeifescl....ckllanktrilvts 606
                  lsgg+r r+ la+ +    ++ lld p + ldv t + + e+ l    c +++++ r ++  
  MMETSP1137-20121227|3391_1 539 NLSGGERNRVQLAKVLRMHGNVLLLDEPTNDLDVHTMRSLEEALLefagCAIVVSHDRFFLDR 601
                 599999999999999999999999999999999999776544433222266666666555443 PP

>> TIGR03415  ABC_choXWV_ATP: choline ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.0   0.0    0.0024      0.13      42      79 ..     117     154 ..     110     167 .. 0.81
   2 !   21.2   0.0   4.7e-07   2.6e-05     161     224 ..     253     312 ..     249     319 .. 0.87
   3 !    8.3   0.0     0.004      0.22      41      75 ..     435     469 ..     429     495 .. 0.83
   4 !   27.8   0.0   4.7e-09   2.5e-07     158     224 ..     533     595 ..     528     613 .. 0.88

  Alignments for each domain:
  == domain 1    score: 9.0 bits;  conditional E-value: 0.0024
   TIGR03415  42 dasldveeGeilvlmGlsGsGkssllravnglnpvsrG 79 
                 d++l    G  + l+Gl G+Gks+ll+ + g+++   G
  MMETSP1137-20121227|3391_1 117 DINLCFYPGAKIGLVGLNGAGKSTLLKIMAGVDTEFEG 154
                 56666667777889**************9999876666 PP

  == domain 2    score: 21.2 bits;  conditional E-value: 4.7e-07
   TIGR03415 161 kvgelsGGmqqrvGlarafateadillmdePfsaldPliraklqdellelqkklkktivfvshd 224
                  v  lsGG ++rv lar +    d+ll+deP   ld    a lq  l    + +k t+v ++hd
  MMETSP1137-20121227|3391_1 253 EVAVLSGGEKRRVALARLLLESPDLLLLDEPTNHLDAQSVAWLQTFL----QDFKGTVVAITHD 312
                 5778********************************99999888654....5567788888888 PP

  == domain 3    score: 8.3 bits;  conditional E-value: 0.004
   TIGR03415  41 adasldveeGeilvlmGlsGsGkssllravnglnp 75 
                 +d+s+++  G i+ ++G  G+Gk++llr + g ++
  MMETSP1137-20121227|3391_1 435 DDVSFSIPPGAIVGIVGPNGAGKTTLLRMLTGEEA 469
                 689*************************9988655 PP

  == domain 4    score: 27.8 bits;  conditional E-value: 4.7e-09
   TIGR03415 158 adkkvgelsGGmqqrvGlarafateadillmdePfsaldPliraklqdellelqkklkktivfvshd 224
                 ++k+v +lsGG + rv la+ + ++ ++ll+deP   ld      l + lle+        + vshd
  MMETSP1137-20121227|3391_1 533 QQKRVANLSGGERNRVQLAKVLRMHGNVLLLDEPTNDLDVHTMRSLEEALLEFAG----CAIVVSHD 595
                 67999*************************************99*******9864....56778887 PP

>> TIGR01257  rim_protein: rim ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.9   0.0     2e-09   1.1e-07    1922    2109 ..      82     295 ..      74     322 .. 0.71
   2 !   31.6   0.0   8.1e-11   4.4e-09     942    1118 ..     430     595 ..     412     618 .. 0.81

  Alignments for each domain:
  == domain 1    score: 26.9 bits;  conditional E-value: 2e-09
   TIGR01257 1922 aeerqriisggnktdilrlneltkvysgtsspavdrlcvgvrpgecfgllgvngagktttfkmltgdttvtsgda......tv.........agksiltnis.dvhqnmgycpqfdaiddlltg.rehlyl...yarlrgvpaeeiekvanwsiksl.glslya......drlagtysggnkrklstaialigcpplvlldepttgmdpqarrml 2109
                  ++ rq  +    k+ i+ +  l+k  +  s   +  + +   pg  +gl+g+ngagk+t +k+++g  t   g a      t+          g+++  +i   v  +     qf+ +   +    +   +    a l g   +eie    w ++ +   ++ a      d+     sgg+kr+++ a  l+  p l+lldept  +d q+   l
  MMETSP1137-20121227|3391_1   82 SQSRQSSLDDSTKSFIFTILGLSKTLPDGSRQLLKDINLCFYPGAKIGLVGLNGAGKSTLLKIMAGVDTEFEGTAkpqsgaTIgylpqepelEGRTVQESIDlAVASSKALLAQFEELSAKVCEpMDDDAMeqaLAEL-GRVQDEIESKDLWELDRVvSRAMEAlrcppgDAEVAVLSGGEKRRVALARLLLESPDLLLLDEPTNHLDAQSVAWL 295 
                  56789999999999**************************************************99554443333111111432222222225788888886467888899999998876654312332220003333.5556788888888775431333333222223777889********************************9986555 PP

  == domain 2    score: 31.6 bits;  conditional E-value: 8.1e-11
   TIGR01257  942 grpavdrlnitfyenqitaflghngagktttlsiltgllpptsgtvlvggkdietnldavrqslgmcpqhnilfhhltv.aehi.lfyaqlkgrsweeaqlemeamledtglhhkrneeaqdlsgglqrklsvaiafvgdakvvvldeptsgvdpysrrsiwdlllkyrsgrtiimsth 1118
                  gr  +d +  ++    i  ++g ngagktt l +ltg   p sg  lv g+ +  +l +v qs     + + +f  +t  a+ i l  + +kgr++    + +      +g ++kr     +lsgg + ++ +a  +    +v++ldept  +d ++ rs+ + ll +  g +i++s  
  MMETSP1137-20121227|3391_1  430 GRTLLDDVSFSIPPGAIVGIVGPNGAGKTTLLRMLTGEEAPDSGE-LVKGQTV--KLVVVDQSRESLANDKSVFEEITDgADEItLGTSTVKGRAYTSW-FGF-----KAGDQQKR---VANLSGGERNRVQLAKVLRMHGNVLLLDEPTNDLDVHTMRSLEEALLEFA-GCAIVVSHD 595 
                  788888888888889999**************************8.5666665..57788888888889999999999525444166789999998653.344.....45666776...568********************************************995.777777754 PP

>> TIGR02770  nickel_nikD: nickel import ATP-binding protein NikD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   0.0     0.033       1.8       1      32 [.     114     145 ..     114     161 .. 0.83
   2 !   20.4   0.0   1.1e-06   5.8e-05     126     190 ..     257     317 ..     252     335 .. 0.83
   3 !   10.4   0.0    0.0012     0.068       1      38 [.     433     466 ..     433     494 .. 0.75
   4 !   23.3   0.0   1.3e-07   7.4e-06     125     197 ..     539     607 ..     534     614 .. 0.83

  Alignments for each domain:
  == domain 1    score: 5.7 bits;  conditional E-value: 0.033
   TIGR02770   1 lvqdvnlslkrgkvlalvGesGsGksltalai 32 
                 l +d+nl    g  ++lvG  G+Gks+  + +
  MMETSP1137-20121227|3391_1 114 LLKDINLCFYPGAKIGLVGLNGAGKSTLLKIM 145
                 57899*********************865544 PP

  == domain 2    score: 20.4 bits;  conditional E-value: 1.1e-06
   TIGR02770 126 lsGGmlqRvmialallleaplliaDePttdlDvvvqaevLklleelrekrglgillithDlgvva 190
                 lsGG   Rv +a  ll ++ ll+ DePt  lD+++       l+++ +++  +++ ithD   + 
  MMETSP1137-20121227|3391_1 257 LSGGEKRRVALARLLLESPDLLLLDEPTNHLDAQSV----AWLQTFLQDFKGTVVAITHDRYFLE 317
                 9*******************************8765....467777888899999****966555 PP

  == domain 3    score: 10.4 bits;  conditional E-value: 0.0012
   TIGR02770   1 lvqdvnlslkrgkvlalvGesGsGksltalailglldk 38 
                 l +dv++s+  g ++++vG  G+Gk++     l +l  
  MMETSP1137-20121227|3391_1 433 LLDDVSFSIPPGAIVGIVGPNGAGKTTL----LRMLTG 466
                 5789*********************974....344444 PP

  == domain 4    score: 23.3 bits;  conditional E-value: 1.3e-07
   TIGR02770 125 elsGGmlqRvmialallleaplliaDePttdlDvvvqaevLklleelrekrglgillithDlgvvaeladeva 197
                 +lsGG   Rv +a  l ++  +l+ DePt dlDv +     + lee   +++   ++++hD   + +la +++
  MMETSP1137-20121227|3391_1 539 NLSGGERNRVQLAKVLRMHGNVLLLDEPTNDLDVHTM----RSLEEALLEFAGCAIVVSHDRFFLDRLATHIL 607
                 79*******************************9864....45555555566666789***999999998775 PP

>> TIGR00956  3a01205: pleiotropic drug resistance family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.0   0.0   2.1e-07   1.2e-05     733     811 ..      72     147 ..      31     182 .. 0.79
   2 !    9.7   0.0   0.00056     0.031     209     244 ..     256     291 ..     248     311 .. 0.71
   3 !   17.4   0.0   2.5e-06   0.00014     775     811 ..     430     466 ..     340     493 .. 0.89
   4 !   10.6   0.0   0.00029     0.016     207     252 ..     537     582 ..     524     592 .. 0.86

  Alignments for each domain:
  == domain 1    score: 21.0 bits;  conditional E-value: 2.1e-07
   TIGR00956 733 lkstdltdeseevneeveeekesgeeifewrdltyevkikkekrvlLdevdGwvkPGkltALmGasGAGkttLlnvLae 811
                     + t+++ ++ ++ ++  + +++ f++  l     +  ++r+lL++++  + PG    L+G  GAGk tLl ++a+
  MMETSP1137-20121227|3391_1  72 G---QQTKQQAKQSQSRQSSLDDSTKSFIFTILGLSKTLPDGSRQLLKDINLCFYPGAKIGLVGLNGAGKSTLLKIMAG 147
                 2...222333333333333333345667777789999999***********************************9997 PP

  == domain 2    score: 9.7 bits;  conditional E-value: 0.00056
   TIGR00956 209 GvsGGerkRvsiaevlvakakiqcwDnatrGLDsat 244
                  +sGGe++Rv++a  l+ ++ ++++D+ t  LD+  
  MMETSP1137-20121227|3391_1 256 VLSGGEKRRVALARLLLESPDLLLLDEPTNHLDAQS 291
                 568888888888888888888888888888888743 PP

  == domain 3    score: 17.4 bits;  conditional E-value: 2.5e-06
   TIGR00956 775 krvlLdevdGwvkPGkltALmGasGAGkttLlnvLae 811
                  r+lLd+v+  + PG +  ++G  GAGkttLl +L++
  MMETSP1137-20121227|3391_1 430 GRTLLDDVSFSIPPGAIVGIVGPNGAGKTTLLRMLTG 466
                 699******************************9986 PP

  == domain 4    score: 10.6 bits;  conditional E-value: 0.00029
   TIGR00956 207 vRGvsGGerkRvsiaevlvakakiqcwDnatrGLDsatalefvkal 252
                 v  +sGGer Rv +a vl ++++++++D+ t  LD  t   + +al
  MMETSP1137-20121227|3391_1 537 VANLSGGERNRVQLAKVLRMHGNVLLLDEPTNDLDVHTMRSLEEAL 582
                 5568*******************************99976665555 PP

>> TIGR00957  MRP_assoc_pro: multi drug resistance-associated protein (MRP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.2   0.0   0.00066     0.036    1301    1331 ..     114     144 ..      80     201 .. 0.66
   2 !   12.8   0.0   5.5e-05     0.003     760     826 ..     256     317 ..     246     382 .. 0.69
   3 !   36.1   0.0   5.1e-12   2.8e-10     653     836 ..     433     610 ..     416     633 .. 0.78

  Alignments for each domain:
  == domain 1    score: 9.2 bits;  conditional E-value: 0.00066
   TIGR00957 1301 vlrdlnvtieggekvgivgrtgagkssltlg 1331
                  +l+d+n+    g k+g+vg  gagks+l   
  MMETSP1137-20121227|3391_1  114 LLKDINLCFYPGAKIGLVGLNGAGKSTLLKI 144 
                  4566666666666666666666666655333 PP

  == domain 2    score: 12.8 bits;  conditional E-value: 5.5e-05
   TIGR00957 760 nlsggqkqrvslaravysdadiyllddplsavdahvakhifekvigpkgllknktrilvthgisylp 826
                  lsgg+k+rv+lar +    d+ lld+p   +da     +   +   kg     t + +th   +l 
  MMETSP1137-20121227|3391_1 256 VLSGGEKRRVALARLLLESPDLLLLDEPTNHLDAQSVAWLQTFLQDFKG-----TVVAITHDRYFLE 317
                 48***************************99999865554433333333.....4455556555555 PP

  == domain 3    score: 36.1 bits;  conditional E-value: 5.1e-12
   TIGR00957 653 tlngltlsipegalvavvgqvgcgkssllsallaemdkvegkv....alkgsvayvpqqawiqndslrenilfgkaleekyykavleacalladleilpsgdrteigekgvnlsggqkqrvslaravysdadiyllddplsavdahvakhifekvigpkgllknktrilvthgisylpqvdviivlsd 836
                  l+ +++sip ga+v +vg+ g gk++ll  l +e     g++    ++k  v    +++  +++s+ e+i  g + e     ++++  a  + + +  +gd+    ++  nlsgg+++rv la+ +  + ++ lld+p   +d h  + + e ++   g       i+v+h   +l +    i+ ++
  MMETSP1137-20121227|3391_1 433 LLDDVSFSIPPGAIVGIVGPNGAGKTTLLRMLTGEEAPDSGELvkgqTVKLVVVDQSRESLANDKSVFEEITDGAD-EITLGTSTVKGRAYTSWFGF-KAGDQQ---KRVANLSGGERNRVQLAKVLRMHGNVLLLDEPTNDLDVHTMRSLEEALLEFAGC-----AIVVSHDRFFLDRLATHILAAE 610
                 57899*****************************988777775111133334444445566777899999998865.66778899999999888775.567775...4668************************************99998888776664.....5777777777776666555554 PP

>> TIGR01194  cyc_pep_trnsptr: cyclic peptide transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.9   0.0   0.00012    0.0064     349     396 ..     108     154 ..      44     164 .. 0.83
   2 !    9.0   0.0    0.0018     0.098     468     535 ..     255     318 ..     250     332 .. 0.81
   3 !   32.9   0.0     1e-10   5.6e-09     357     533 ..     434     599 ..     418     612 .. 0.80

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 0.00012
   TIGR01194 349 vessegfalGpidlriasGelvyivGenGcGkstliklllGlyipqeG 396
                 +++s    l  i+l    G  + +vG nG Gkstl+k++ G+    eG
  MMETSP1137-20121227|3391_1 108 PDGSRQ-LLKDINLCFYPGAKIGLVGLNGAGKSTLLKIMAGVDTEFEG 154
                 555554.4789*****************************98765555 PP

  == domain 2    score: 9.0 bits;  conditional E-value: 0.0018
   TIGR01194 468 tdlstGqrkrlalvnayleerpvllldewaadqdpafkrvfyeellpdlkrrGktilvishddryfel 535
                 + ls G+++r+al    le   +lllde +   d      + + +l d+k    t++ i+hd  ++e 
  MMETSP1137-20121227|3391_1 255 AVLSGGEKRRVALARLLLESPDLLLLDEPTNHLDAQ-SVAWLQTFLQDFK---GTVVAITHDRYFLET 318
                 5699*************************9999965.4566788999998...499*****8655555 PP

  == domain 3    score: 32.9 bits;  conditional E-value: 1e-10
   TIGR01194 357 lGpidlriasGelvyivGenGcGkstliklllGlyipqeGellldGeavsdesrddyrdlfsavfadyylfddlvqp.de.kkqasldqattylsrleledkvkvedlnystttdlstGqrkrlalvnayleerpvllldewaadqdpafkrvfyeellpdlkrrGktilvishddryf 533
                 l  + + i  G +v ivG nG Gk+tl+++l G   p +Gel ++G++v     d+ r+ +     d  +f+++ +  de    +s+ + + y s ++++      d +    ++ls G+r r+ l      +  vlllde + d d    r + e ll      G + +v+shd  ++
  MMETSP1137-20121227|3391_1 434 LDDVSFSIPPGAIVGIVGPNGAGKTTLLRMLTGEEAPDSGEL-VKGQTVKLVVVDQSRESL---ANDKSVFEEITDGaDEiTLGTSTVKGRAYTSWFGFKA----GDQQ-KRVANLSGGERNRVQLAKVLRMHGNVLLLDEPTNDLDVHTMRSLEEALLE---FAGCA-IVVSHDRFFL 599
                 5667889999*******************************6.69****999999999855...5788889888864144234679999999999999864....3333.44789**********************************99999888764...45654.5778875444 PP

>> TIGR00630  uvra: excinuclease ABC subunit A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.0      0.35        19      11      38 ..     114     141 ..     106     158 .. 0.70
   2 !   16.9   0.0   5.7e-06   0.00031     826     903 ..     254     326 ..     250     333 .. 0.84
   3 ?    5.4   0.0     0.017      0.91     623     651 ..     434     462 ..     403     483 .. 0.90
   4 !   15.3   0.0   1.6e-05   0.00089     826     874 ..     537     582 ..     529     609 .. 0.72

  Alignments for each domain:
  == domain 1    score: 1.0 bits;  conditional E-value: 0.35
   TIGR00630  11 nLknidvelprdklvvitGlsGsGkssL 38 
                  Lk+i++ +   + + + Gl G+Gks+L
  MMETSP1137-20121227|3391_1 114 LLKDINLCFYPGAKIGLVGLNGAGKSTL 141
                 3666666666666666666666666665 PP

  == domain 2    score: 16.9 bits;  conditional E-value: 5.7e-06
   TIGR00630 826 attLsGGeaqrvkLakeLskrstgktlyilDePttGLhfdDikkLlevlqrlvdkGntvvviehnldvik.saDyiidl 903
                 +  LsGGe +rv La+ L +      l +lDePt  L  + ++ L + lq +     tvv i h+   +  ++ +i++l
  MMETSP1137-20121227|3391_1 254 VAVLSGGEKRRVALARLLLE---SPDLLLLDEPTNHLDAQSVAWLQTFLQDFK---GTVVAITHDRYFLEtTCKWILEL 326
                 578*************9986...5679******************99999875...48999999987776146788887 PP

  == domain 3    score: 5.4 bits;  conditional E-value: 0.017
   TIGR00630 623 lkdidvsiplglltvitGvsgsGkstLin 651
                 l d++ sip g ++ i G+ g+Gk tL+ 
  MMETSP1137-20121227|3391_1 434 LDDVSFSIPPGAIVGIVGPNGAGKTTLLR 462
                 7899999*****************99986 PP

  == domain 4    score: 15.3 bits;  conditional E-value: 1.6e-05
   TIGR00630 826 attLsGGeaqrvkLakeLskrstgktlyilDePttGLhfdDikkLlevl 874
                 +  LsGGe  rv+Lak L+ +     + +lDePt  L ++ ++ L e l
  MMETSP1137-20121227|3391_1 537 VANLSGGERNRVQLAKVLRMH---GNVLLLDEPTNDLDVHTMRSLEEAL 582
                 567899999999999988653...3466889999988888887776654 PP

>> TIGR00231  small_GTP: small GTP-binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.0   9.6e-05    0.0052       4      52 ..     126     177 ..     124     187 .. 0.74
   2 !   14.3   0.0    0.0001    0.0057       6      35 ..     447     474 ..     444     492 .. 0.79

  Alignments for each domain:
  == domain 1    score: 14.4 bits;  conditional E-value: 9.6e-05
   TIGR00231   4 ikivivGhvdvGKstLlnsllknk.isiteskp..gvtrdyvteqieedGkt 52 
                 +ki++vG  ++GKstLl+ +++ +  ++  +kp  g+t  y ++  e +G t
  MMETSP1137-20121227|3391_1 126 AKIGLVGLNGAGKSTLLKIMAGVDtEFEGTAKPqsGATIGYLPQEPELEGRT 177
                 69****************9998651366666666677777777766666655 PP

  == domain 2    score: 14.3 bits;  conditional E-value: 0.0001
   TIGR00231   6 ivivGhvdvGKstLlnsllknkisiteskp 35 
                 ++ivG  ++GK+tLl  l++++ ++++  +
  MMETSP1137-20121227|3391_1 447 VGIVGPNGAGKTTLLRMLTGEE-APDSG-E 474
                 89******************99.77664.4 PP

>> TIGR00606  rad50: rad50
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.2   0.1       9.2   5.1e+02      33      48 ..     130     145 ..     128     150 .. 0.84
   2 ?    4.6   0.0      0.02       1.1    1213    1250 ..     264     301 ..     245     321 .. 0.81
   3 ?    5.2   0.1     0.013      0.72      33      48 ..     449     464 ..     436     474 .. 0.84
   4 !    6.6   0.0    0.0049      0.27    1213    1251 ..     547     585 ..     531     605 .. 0.89

  Alignments for each domain:
  == domain 1    score: -4.2 bits;  conditional E-value: 9.2
   TIGR00606  33 lvGPnGaGkttiieal 48 
                 lvG nGaGk t++  +
  MMETSP1137-20121227|3391_1 130 LVGLNGAGKSTLLKIM 145
                 79*********98765 PP

  == domain 2    score: 4.6 bits;  conditional E-value: 0.02
   TIGR00606 1213 rlalaevfclnCgiialdePttnldrekieslaialve 1250
                  r+ala  +  +  ++ ldePt  ld + +  l   l +
  MMETSP1137-20121227|3391_1  264 RVALARLLLESPDLLLLDEPTNHLDAQSVAWLQTFLQD 301 
                  99************************999888777765 PP

  == domain 3    score: 5.2 bits;  conditional E-value: 0.013
   TIGR00606  33 lvGPnGaGkttiieal 48 
                 +vGPnGaGktt++  l
  MMETSP1137-20121227|3391_1 449 IVGPNGAGKTTLLRML 464
                 89*********98766 PP

  == domain 4    score: 6.6 bits;  conditional E-value: 0.0049
   TIGR00606 1213 rlalaevfclnCgiialdePttnldrekieslaialvei 1251
                  r+ la v+ +   ++ ldePt +ld + + sl  al e 
  MMETSP1137-20121227|3391_1  547 RVQLAKVLRMHGNVLLLDEPTNDLDVHTMRSLEEALLEF 585 
                  899*******************************99885 PP

>> TIGR02729  Obg_CgtA: Obg family GTPase CgtA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.9   0.0   0.00033     0.018     147     178 ..     115     146 ..     104     153 .. 0.80
   2 ?    3.9   0.0     0.087       4.8     158     178 ..     445     465 ..     422     470 .. 0.85

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 0.00033
   TIGR02729 147 erelkleLklladvglvGlpnaGkStllsavs 178
                  ++++l +   a +glvGl  aGkStll+ ++
  MMETSP1137-20121227|3391_1 115 LKDINLCFYPGAKIGLVGLNGAGKSTLLKIMA 146
                 5667777777799***************9876 PP

  == domain 2    score: 3.9 bits;  conditional E-value: 0.087
   TIGR02729 158 advglvGlpnaGkStllsavs 178
                 a vg+vG   aGk tll+ ++
  MMETSP1137-20121227|3391_1 445 AIVGIVGPNGAGKTTLLRMLT 465
                 679**************9987 PP

>> TIGR00750  lao: LAO/AO transport system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.9   0.0    0.0028      0.15      20      53 ..     111     144 ..      99     153 .. 0.83
   2 ?   -2.2   0.1       6.8   3.7e+02     207     255 ..     337     385 ..     317     395 .. 0.73
   3 !    9.5   0.1    0.0019      0.11      22      58 ..     432     468 ..     419     494 .. 0.69

  Alignments for each domain:
  == domain 1    score: 8.9 bits;  conditional E-value: 0.0028
   TIGR00750  20 akellkrilpktGrahvvGltGvPGaGkstlvek 53 
                 +++llk i         +Gl G+ GaGkstl++ 
  MMETSP1137-20121227|3391_1 111 SRQLLKDINLCFYPGAKIGLVGLNGAGKSTLLKI 144
                 78888888887778889**************975 PP

  == domain 2    score: -2.2 bits;  conditional E-value: 6.8
   TIGR00750 207 rekgWrPkvlktsavegrGikelvdaieehkkvlkksGkleekrrersv 255
                  +++W  k     a e++G +++++ +e   + +++s k  + + + + 
  MMETSP1137-20121227|3391_1 337 NYSEWLAKKAAKLAAEKKGEENMAKMLEAELEWVRSSPKARQTKSKARL 385
                 5678888888888999999999999999999999888877655443333 PP

  == domain 3    score: 9.5 bits;  conditional E-value: 0.0019
   TIGR00750  22 ellkrilpktGrahvvGltGvPGaGkstlveklieel 58 
                  ll+ ++ +     +vG+ G  GaGk tl+  l+ e 
  MMETSP1137-20121227|3391_1 432 TLLDDVSFSIPPGAIVGIVGPNGAGKTTLLRMLTGEE 468
                 566666666666789***************9997543 PP

>> TIGR03496  FliI_clade1: flagellar protein export ATPase FliI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.6   0.1    0.0029      0.16      75     159 ..      60     147 ..      21     153 .. 0.61
   2 ?    4.9   0.0     0.037         2     133     162 ..     440     469 ..     430     474 .. 0.85

  Alignments for each domain:
  == domain 1    score: 8.6 bits;  conditional E-value: 0.0029
   TIGR03496  75 geellGrvidalgepldgkgaleaeeevsleaepin.plkrerieevldvGvrai..nalltvgkGqrlglfagsGvGKsvLlgmlar 159
                 +++  G+  +++g+   ++++ +++++ sl+ ++ +  ++   ++++l  G r +  +  l    G ++gl+   G GKs+Ll ++a 
  MMETSP1137-20121227|3391_1  60 AKKGGGKKPKSSGQQTKQQAKQSQSRQSSLDDSTKSfIFTILGLSKTLPDGSRQLlkDINLCFYPGAKIGLVGLNGAGKSTLLKIMAG 147
                 44455555666666666666655555555554444313344556777777777662234444557*********************96 PP

  == domain 2    score: 4.9 bits;  conditional E-value: 0.037
   TIGR03496 133 tvgkGqrlglfagsGvGKsvLlgmlarate 162
                 ++  G  +g++   G GK++Ll ml+ +++
  MMETSP1137-20121227|3391_1 440 SIPPGAIVGIVGPNGAGKTTLLRMLTGEEA 469
                 56678889*****************98765 PP

>> TIGR02546  III_secr_ATP: type III secretion apparatus H+-transporting two-sector ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   0.1     0.027       1.5     129     167 ..     106     146 ..      32     153 .. 0.80
   2 !    7.5   0.0    0.0055       0.3     142     172 ..     440     470 ..     394     477 .. 0.81

  Alignments for each domain:
  == domain 1    score: 5.3 bits;  conditional E-value: 0.027
   TIGR02546 129 plalGvrai..DglltvgeGqRiGifaeaGvGkstLlsmia 167
                 +l+ G r +  D  l    G +iG+ +  G+GkstLl+ +a
  MMETSP1137-20121227|3391_1 106 TLPDGSRQLlkDINLCFYPGAKIGLVGLNGAGKSTLLKIMA 146
                 555555544335556667899****************8765 PP

  == domain 2    score: 7.5 bits;  conditional E-value: 0.0055
   TIGR02546 142 tvgeGqRiGifaeaGvGkstLlsmiargaka 172
                  +  G  +Gi +  G+Gk+tLl m+  +++ 
  MMETSP1137-20121227|3391_1 440 SIPPGAIVGIVGPNGAGKTTLLRMLTGEEAP 470
                 6677899*****************9877655 PP

>> TIGR03498  FliI_clade3: flagellar protein export ATPase FliI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   0.1     0.026       1.4     123     163 ..     106     148 ..      28     153 .. 0.76
   2 ?    6.3   0.0     0.012      0.68     139     167 ..     443     471 ..     428     478 .. 0.87

  Alignments for each domain:
  == domain 1    score: 5.3 bits;  conditional E-value: 0.026
   TIGR03498 123 klktGvrvi..dlfltlcrGqRlGifaGsGvGkstllsmlara 163
                 +l  G r +  d+ l    G ++G+    G Gkstll ++a  
  MMETSP1137-20121227|3391_1 106 TLPDGSRQLlkDINLCFYPGAKIGLVGLNGAGKSTLLKIMAGV 148
                 55556665522444455569*******************9975 PP

  == domain 2    score: 6.3 bits;  conditional E-value: 0.012
   TIGR03498 139 rGqRlGifaGsGvGkstllsmlaraaaaD 167
                  G  +Gi    G Gk+tll ml+ ++a D
  MMETSP1137-20121227|3391_1 443 PGAIVGIVGPNGAGKTTLLRMLTGEEAPD 471
                 57889******************999887 PP

>> TIGR03680  eif2g_arch: translation initiation factor 2, gamma subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.0      0.18       9.6       3      31 ..     123     151 ..     121     169 .. 0.86
   2 !    8.7   0.0    0.0035      0.19       4      51 ..     443     489 ..     440     508 .. 0.84

  Alignments for each domain:
  == domain 1    score: 3.1 bits;  conditional E-value: 0.18
   TIGR03680   3 qpevniglvGhvDhGkttlvkaltGvwtd 31 
                 +p ++iglvG    Gk+tl k ++Gv t+
  MMETSP1137-20121227|3391_1 123 YPGAKIGLVGLNGAGKSTLLKIMAGVDTE 151
                 67889********************9886 PP

  == domain 2    score: 8.7 bits;  conditional E-value: 0.0035
   TIGR03680   4 pevniglvGhvDhGkttlvkaltGvwtdthseelkrgisiklGyadae 51 
                 p + +g+vG    Gkttl + ltG      s el +g ++kl  +d +
  MMETSP1137-20121227|3391_1 443 PGAIVGIVGPNGAGKTTLLRMLTGEEAP-DSGELVKGQTVKLVVVDQS 489
                 56789*******************9865.6889999*****9988865 PP

>> TIGR03497  FliI_clade2: flagellar protein export ATPase FliI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.3   0.1    0.0078      0.43      48     158 ..      31     146 ..      22     151 .. 0.70
   2 ?    4.3   0.0     0.065       3.6     132     158 ..     439     465 ..     431     472 .. 0.85

  Alignments for each domain:
  == domain 1    score: 7.3 bits;  conditional E-value: 0.0078
   TIGR03497  48 LmPleevegiapgslvea..tgkklavkvgkellGkvldglGepldekelvkkkeklpleaeppn.plkrkrikdvlevgvkai..dglltvGkGqrvGifagsGvGkstllgmia 158
                 L P++  ++ ++g ++++  ++++  + + k+  Gk  ++ G+  +++++ ++ ++ +l+++  +  ++   ++++l  g + +  d  l    G ++G+    G Gkstll ++a
  MMETSP1137-20121227|3391_1  31 LSPIQAHRSTGKGMVITSspVARQTPIMMAKKGGGKKPKSSGQQTKQQAKQSQSRQSSLDDSTKSfIFTILGLSKTLPDGSRQLlkDINLCFYPGAKIGLVGLNGAGKSTLLKIMA 146
                 5666666666666666541145666677777777777777777777777766666666666555413455567777777777664466688889******************9998 PP

  == domain 2    score: 4.3 bits;  conditional E-value: 0.065
   TIGR03497 132 ltvGkGqrvGifagsGvGkstllgmia 158
                 +++  G  vGi    G Gk+tll m+ 
  MMETSP1137-20121227|3391_1 439 FSIPPGAIVGIVGPNGAGKTTLLRMLT 465
                 67778999*****************96 PP

>> TIGR03156  GTP_HflX: GTP-binding protein HflX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   0.0     0.017      0.94     191     213 ..     127     149 ..     124     163 .. 0.88
   2 ?    4.6   0.0     0.049       2.7     191     214 ..     446     469 ..     443     494 .. 0.89

  Alignments for each domain:
  == domain 1    score: 6.1 bits;  conditional E-value: 0.017
   TIGR03156 191 tvalvGYTNaGKstllnaltkae 213
                 +++lvG   aGKstll+ +++ +
  MMETSP1137-20121227|3391_1 127 KIGLVGLNGAGKSTLLKIMAGVD 149
                 799**************998765 PP

  == domain 2    score: 4.6 bits;  conditional E-value: 0.049
   TIGR03156 191 tvalvGYTNaGKstllnaltkaev 214
                  v++vG   aGK+tll++lt++e+
  MMETSP1137-20121227|3391_1 446 IVGIVGPNGAGKTTLLRMLTGEEA 469
                 5899****************9875 PP

>> TIGR02528  EutP: ethanolamine utilization protein, EutP
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.0      0.23        13       2      28 ..     127     153 ..     126     159 .. 0.87
   2 ?    8.1   0.0     0.012      0.64       5      24 ..     449     468 ..     446     485 .. 0.88

  Alignments for each domain:
  == domain 1    score: 3.9 bits;  conditional E-value: 0.23
   TIGR02528   2 rimliGsvgcGkttLtqaLkgeeikyk 28 
                 +i l+G  g+Gk tL + + g ++++ 
  MMETSP1137-20121227|3391_1 127 KIGLVGLNGAGKSTLLKIMAGVDTEFE 153
                 7889*************9999988765 PP

  == domain 2    score: 8.1 bits;  conditional E-value: 0.012
   TIGR02528   5 liGsvgcGkttLtqaLkgee 24 
                 ++G+ g+GkttL + L+gee
  MMETSP1137-20121227|3391_1 449 IVGPNGAGKTTLLRMLTGEE 468
                 79***************997 PP

>> TIGR02322  phosphon_PhnN: phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.1       0.4        22       4      20 ..     128     144 ..     125     152 .. 0.85
   2 !    9.4   0.1    0.0032      0.17       1      22 [.     444     465 ..     444     481 .. 0.84
   3 ?   -1.7   0.0       8.1   4.4e+02      92     112 ..     483     503 ..     473     505 .. 0.77

  Alignments for each domain:
  == domain 1    score: 2.5 bits;  conditional E-value: 0.4
   TIGR02322   4 ilvvGpsGaGKDtlldl 20 
                 i +vG  GaGK tll+ 
  MMETSP1137-20121227|3391_1 128 IGLVGLNGAGKSTLLKI 144
                 679***********986 PP

  == domain 2    score: 9.4 bits;  conditional E-value: 0.0032
   TIGR02322   1 grlilvvGpsGaGKDtlldlar 22 
                 g ++ +vGp GaGK tll ++ 
  MMETSP1137-20121227|3391_1 444 GAIVGIVGPNGAGKTTLLRMLT 465
                 67899*************9875 PP

  == domain 3    score: -1.7 bits;  conditional E-value: 8.1
   TIGR02322  92 vvvvngsRavlpeararyanl 112
                  vvv  sR++l++ ++ ++++
  MMETSP1137-20121227|3391_1 483 LVVVDQSRESLANDKSVFEEI 503
                 589********9988888765 PP

>> TIGR00436  era: GTP-binding protein Era
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   0.1     0.038       2.1       2      22 ..     127     147 ..     126     155 .. 0.87
   2 ?    6.3   0.1     0.021       1.2       3      24 ..     447     468 ..     445     486 .. 0.92

  Alignments for each domain:
  == domain 1    score: 5.5 bits;  conditional E-value: 0.038
   TIGR00436   2 fvailGrpnvGKSTLlNkllg 22 
                 +++++G   +GKSTLl  + g
  MMETSP1137-20121227|3391_1 127 KIGLVGLNGAGKSTLLKIMAG 147
                 79**************88776 PP

  == domain 2    score: 6.3 bits;  conditional E-value: 0.021
   TIGR00436   3 vailGrpnvGKSTLlNkllgqk 24 
                 v+i+G+  +GK TLl  l+g++
  MMETSP1137-20121227|3391_1 447 VGIVGPNGAGKTTLLRMLTGEE 468
                 9***************999976 PP

>> TIGR03185  DNA_S_dndD: DNA sulfur modification protein DndD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.1     0.055         3      31      46 ..     129     143 ..     113     146 .. 0.76
   2 ?    6.4   0.1      0.01      0.55      28      46 ..     444     462 ..     427     465 .. 0.75

  Alignments for each domain:
  == domain 1    score: 4.0 bits;  conditional E-value: 0.055
   TIGR03185  31 iLlgglNGaGKTTlLd 46 
                   l glNGaGK TlL+
  MMETSP1137-20121227|3391_1 129 G-LVGLNGAGKSTLLK 143
                 4.458*********96 PP

  == domain 2    score: 6.4 bits;  conditional E-value: 0.01
   TIGR03185  28 kpiiLlgglNGaGKTTlLd 46 
                   i+ + g NGaGKTTlL 
  MMETSP1137-20121227|3391_1 444 GAIVGIVGPNGAGKTTLLR 462
                 6789999**********96 PP

>> TIGR00152  TIGR00152: dephospho-CoA kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   0.3     0.063       3.5       2      20 ..     128     146 ..     127     149 .. 0.93
   2 ?    7.1   0.0     0.017      0.93       1      20 [.     446     465 ..     446     470 .. 0.93

  Alignments for each domain:
  == domain 1    score: 5.3 bits;  conditional E-value: 0.063
   TIGR00152   2 igltGgigsGKstvakilk 20 
                 igl+G  g GKst++ki++
  MMETSP1137-20121227|3391_1 128 IGLVGLNGAGKSTLLKIMA 146
                 9**************9986 PP

  == domain 2    score: 7.1 bits;  conditional E-value: 0.017
   TIGR00152   1 iigltGgigsGKstvakilk 20 
                 i+g++G  g GK+t++++l+
  MMETSP1137-20121227|3391_1 446 IVGIVGPNGAGKTTLLRMLT 465
                 89***************997 PP

>> TIGR00929  VirB4_CagE: type IV secretion/conjugal transfer ATPase, VirB4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.2       0.6        33     443     457 ..     131     145 ..     129     155 .. 0.86
   2 ?    8.9   0.0    0.0015     0.081     442     458 ..     449     465 ..     446     492 .. 0.90

  Alignments for each domain:
  == domain 1    score: 0.3 bits;  conditional E-value: 0.6
   TIGR00929 443 fGptgsGKTvllnfl 457
                 +G +g+GK++ll+++
  MMETSP1137-20121227|3391_1 131 VGLNGAGKSTLLKIM 145
                 799*********986 PP

  == domain 2    score: 8.9 bits;  conditional E-value: 0.0015
   TIGR00929 442 IfGptgsGKTvllnfll 458
                 I+Gp+g+GKT+ll +l 
  MMETSP1137-20121227|3391_1 449 IVGPNGAGKTTLLRMLT 465
                 99************996 PP

>> TIGR00611  recf: DNA replication and repair protein RecF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.0      0.65        35      16      41 ..     117     143 ..     113     148 .. 0.80
   2 ?    6.7   0.0     0.014      0.75      27      42 ..     448     463 ..     433     468 .. 0.77

  Alignments for each domain:
  == domain 1    score: 1.2 bits;  conditional E-value: 0.65
   TIGR00611  16 evdlelspgvn.vlvGeNgqGKtnlle 41 
                 +++l + pg    lvG Ng GK  ll+
  MMETSP1137-20121227|3391_1 117 DINLCFYPGAKiGLVGLNGAGKSTLLK 143
                 56677777777569********99986 PP

  == domain 2    score: 6.7 bits;  conditional E-value: 0.014
   TIGR00611  27 vlvGeNgqGKtnllea 42 
                  +vG+Ng GKt ll+ 
  MMETSP1137-20121227|3391_1 448 GIVGPNGAGKTTLLRM 463
                 59***********985 PP

>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.0      0.45        25    1087    1142 ..     252     303 ..     246     317 .. 0.64
   2 ?   -3.6   0.8       6.1   3.4e+02     346     384 ..     346     384 ..     338     399 .. 0.36
   3 ?   10.6   0.2   0.00031     0.017      15      37 ..     435     458 ..     427     461 .. 0.83

  Alignments for each domain:
  == domain 1    score: 0.2 bits;  conditional E-value: 0.45
   TIGR02168 1087 qnlslLSGGEKALtAlaLlFAifkvkPaPfciLDEVdApLDdaNveRFakllkefs 1142
                  +++  LSGGEK  +Ala l+    +    + +LDE    LD + v  + ++l++f+
  MMETSP1137-20121227|3391_1  252 AEVAVLSGGEKRRVALARLL----LESPDLLLLDEPTNHLDAQSVAWLQTFLQDFK 303 
                  67889**********98542....33333555666555555555555555555555 PP

  == domain 2    score: -3.6 bits;  conditional E-value: 6.1
   TIGR02168 346 leelkeelesleaeleeaeaeleelesrleeleeeleel 384
                  ++l++e + +e++++ +eaele ++s+ ++ +++ ++ 
  MMETSP1137-20121227|3391_1 346 AAKLAAEKKGEENMAKMLEAELEWVRSSPKARQTKSKAR 384
                 222222222222222222222222222222222222222 PP

  == domain 3    score: 10.6 bits;  conditional E-value: 0.00031
   TIGR02168  15 dkttinfe.kgitgiVGPNGcGKS 37 
                 d +++ ++ + i+giVGPNG GK+
  MMETSP1137-20121227|3391_1 435 DDVSFSIPpGAIVGIVGPNGAGKT 458
                 56677776467************6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (647 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       290  (0.0706972); expected 82.0 (0.02)
Passed bias filter:                      260  (0.0633837); expected 82.0 (0.02)
Passed Vit filter:                       124  (0.0302292); expected 4.1 (0.001)
Passed Fwd filter:                        75  (0.0182838); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              75  [number of targets reported over threshold]
# CPU time: 2.08u 0.21s 00:00:02.29 Elapsed: 00:00:02.45
# Mc/sec: 348.56
//
Query:       MMETSP1137-20121227|3393_1  [L=605]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.052   11.4   0.6       0.11   10.3   0.0    1.8  2  TIGR01495 ETRAMP: early transcribed membrane protein (ETRAMP) family


Domain annotation for each model (and alignments):
>> TIGR01495  ETRAMP: early transcribed membrane protein (ETRAMP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   2.8e-05      0.11      48      80 ..      19      52 ..      10      57 .. 0.85
   2 ?   -3.2   0.3      0.48     2e+03      44      51 ..     353     360 ..     347     371 .. 0.60

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 2.8e-05
   TIGR01495 48 nkklilySsiasglal.lvgaavGlglylkkknk 80
                 +kl l+ +i +++a+ +vg ++Glg+++++ + 
  MMETSP1137-20121227|3393_1 19 ARKLCLFAAIFTAIAVfSVGVGIGLGFWVSEEKA 52
                689***********9758*********9988776 PP

  == domain 2    score: -3.2 bits;  conditional E-value: 0.48
   TIGR01495  44 kkkrnkkl 51 
                  kk+nkkl
  MMETSP1137-20121227|3393_1 353 SKKKNKKL 360
                 34444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (605 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       147  (0.0358362); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.14s 00:00:00.56 Elapsed: 00:00:00.56
# Mc/sec: 1400.94
//
Query:       MMETSP1137-20121227|3394_1  [L=269]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (269 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        77  (0.0187713); expected 82.0 (0.02)
Passed bias filter:                       42  (0.0102389); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.13s 00:00:00.34 Elapsed: 00:00:00.40
# Mc/sec: 887.63
//
Query:       MMETSP1137-20121227|3395_1  [L=440]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        5.9    3.8   9.1        9.1    3.2   6.3    1.2  1  TIGR00599 rad18: DNA repair protein rad18


Domain annotation for each model (and alignments):
>> TIGR00599  rad18: DNA repair protein rad18
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   6.3    0.0022       9.1      29      72 ..     297     341 ..     294     347 .. 0.87

  Alignments for each domain:
  == domain 1    score: 3.2 bits;  conditional E-value: 0.0022
   TIGR00599  29 ChvCkdffkaPvltsCsH.tFCslCiRrcLseepkCPlCraedqE 72 
                 C +C    +   + +C H   C+ C +    +  kCP+Cr+  q 
  MMETSP1137-20121227|3395_1 297 CVICMSSVRDTTVLPCRHmCMCAECAKVLRLQSNKCPICRTAIQS 341
                 9*****************458****9988778889*****98774 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (440 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        66  (0.0160897); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.31u 0.14s 00:00:00.45 Elapsed: 00:00:00.42
# Mc/sec: 1382.74
//
Query:       MMETSP1137-20121227|3396_1  [L=398]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (398 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       235  (0.0572891); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.15s 00:00:00.44 Elapsed: 00:00:00.33
# Mc/sec: 1591.87
//
Query:       MMETSP1137-20121227|3397_1  [L=891]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.1e-29  100.1   2.2    3.6e-26   89.4   0.0    2.7  3  TIGR02956 TMAO_torS: TMAO reductase sytem sensor TorS
    3.6e-15   53.4   1.3      5e-15   52.9   0.0    1.7  2  TIGR02916 PEP_his_kin: putative PEP-CTERM system histidine kinase
      1e-13   48.8   0.0    2.7e-11   40.9   0.0    2.2  2  TIGR02966 phoR_proteo: phosphate regulon sensor kinase PhoR
    1.2e-10   38.4   0.0    2.3e-10   37.4   0.0    1.4  1  TIGR02938 nifL_nitrog: nitrogen fixation negative regulator NifL
    2.2e-08   31.4   0.1    7.5e-08   29.6   0.0    1.9  2  TIGR01386 cztS_silS_copS: heavy metal sensor kinase
    1.2e-06   24.9   0.0    2.8e-06   23.8   0.0    1.5  1  TIGR03785 marine_sort_HK: proteobacterial dedicated sortase system histidine kinase
    2.1e-06   25.0   0.1    6.5e-06   23.4   0.0    1.8  2  TIGR02154 PhoB: phosphate regulon transcriptional regulatory protein PhoB
     0.0026   14.1   0.0     0.0044   13.3   0.0    1.3  1  TIGR01052 top6b: DNA topoisomerase VI, B subunit
  ------ inclusion threshold ------
      0.015   12.8   0.0       0.17    9.3   0.0    2.3  2  TIGR01387 cztR_silR_copR: heavy metal response regulator
       0.15    9.0   3.8       0.27    8.1   2.7    1.3  1  TIGR01554 major_cap_HK97: phage major capsid protein, HK97 family


Domain annotation for each model (and alignments):
>> TIGR02956  TMAO_torS: TMAO reductase sytem sensor TorS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.8   1.6   0.00077      0.32     420     480 ..     224     281 ..     212     306 .. 0.81
   2 !   89.4   0.0   8.8e-29   3.6e-26     529     690 ..     397     560 ..     390     573 .. 0.92
   3 ?   -0.9   0.0      0.16        66     793     820 ..     863     890 ..     764     890 .. 0.67

  Alignments for each domain:
  == domain 1    score: 6.8 bits;  conditional E-value: 0.00077
   TIGR02956 420 ehkesLeelvaqrTqeLketnerLneEvlnHakAraeAeeAnrAKSaFLAtmSHEiRTPln 480
                 eh    ++l + + qe  +t + +  E  +H+  r++Aee  + + ++L ++ H+  TP+ 
  MMETSP1137-20121227|3397_1 224 EHM---AQLERAHRQEVLATEHAIRCEHRAHEAERQNAEERLQQRNKYLGAICHDFGTPVS 281
                 444...455556778999999**************************************85 PP

  == domain 2    score: 89.4 bits;  conditional E-value: 8.8e-29
   TIGR02956 529 hlsiserafdlskLledvlhlmesraqekgiqLsleidedlpevlqgDlsrirQvliNlvgNaiKFTdrGsvvlrvslndds.llfeVeDtGvGiaeeeqetlFkaftqae.grkksgGTGLGLAiskrlveamdgelsveSelgkGScFafelplergkkaek 690
                  l    ++f++ +L+ +   + +   ++  ++ +++++ +lp v+++D + i  +l+N+ +N++K T +Gsv++  +  ++s l+feV DtG+G++ e   +lF++f+ a     ++  TGLGL  sk+l+e+++g ++   + g G +F  e+p++   +a+ 
  MMETSP1137-20121227|3397_1 397 TLVPDCKPFEMAELMRKSASIARDTRKSERVTVHTQTSAELPLVVETDANWIFMILVNFASNSMKHTRQGSVTITAERVGQShLRFEVSDTGCGVPAEFVPSLFQPFSSAStTATSVESTGLGLYHSKQLAEILGGSVGYRPNAGGGATFYVEVPMKLVTAARA 560
                 55666799***************9999************************************************99888888***************************97888899*************************************987666554 PP

  == domain 3    score: -0.9 bits;  conditional E-value: 0.16
   TIGR02956 793 kylaagFdgflaKPlsekqLvatlakil 820
                   l+ag d  +aKP +  +L++tl+k l
  MMETSP1137-20121227|3397_1 863 ACLDAGMDDAIAKPFNAATLYNTLQKLL 890
                 567899*****************99876 PP

>> TIGR02916  PEP_his_kin: putative PEP-CTERM system histidine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.7      0.65   2.7e+02      69     182 ..     101     212 ..      54     222 .. 0.67
   2 !   52.9   0.0   1.2e-17     5e-15     557     679 .]     421     551 ..     398     551 .. 0.77

  Alignments for each domain:
  == domain 1    score: -2.4 bits;  conditional E-value: 0.65
   TIGR02916  69 wlaflltllrrtltsakeklqklkllqalaallvllllvleaalvlpdlateellvalvsanllllgllllavigLvlvEqlyrsvseeerWaikflclg.laalfvfdfylyad 182
                 +la+ + ++r t++s +   ++++ l+      +l++l++ a+ ++  + + + l   + an+ +++ l++ +  L+   +l   ++ ++ +  + + +g +  ++vf + l+a+
  MMETSP1137-20121227|3397_1 101 YLALAIPVIRLTVDSFTVSENSFEPLEICLREYGLGILCPVAMSIVFSTLPVR-LSFVIIANICYAARLATTINKLMIANNLN--AAGDSIYVAWDIHVGsMLPVYVFAISLFAN 212
                 45666666777777777777777777777777777777777555555555555.44456678888888888888888877774..444555555555554245677888888876 PP

  == domain 2    score: 52.9 bits;  conditional E-value: 1.2e-17
   TIGR02916 557 raqkprievsvdkd....levradrerlervlghLvqNAleATeeeGkVkirverek.eaavieieDsGqGmseeFirerLFkPFdttKk.....aGmGiGvyesreyveelGGeieveStpgkGtiftlvlP 679
                 + + +r+ v+ +++    l v++d + +  +l++ + N +  T+ +G+V+i +er + ++++ e++D+G+G++ eF+   LF+PF+++ +        G+G+y s+++ e lGG++  + ++g G++f + +P
  MMETSP1137-20121227|3397_1 421 TRKSERVTVHTQTSaelpLVVETDANWIFMILVNFASNSMKHTR-QGSVTITAERVGqSHLRFEVSDTGCGVPAEFV-PSLFQPFSSASTtatsvESTGLGLYHSKQLAEILGGSVGYRPNAGGGATFYVEVP 551
                 22233333333222234489999******************996.6*********998999***************6.68*****8755421123568******************************99887 PP

>> TIGR02966  phoR_proteo: phosphate regulon sensor kinase PhoR
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.8   0.0    0.0031       1.3     111     148 ..     262     299 ..     182     314 .. 0.82
   2 !   40.9   0.0   6.6e-14   2.7e-11     185     331 ..     401     548 ..     345     550 .. 0.82

  Alignments for each domain:
  == domain 1    score: 5.8 bits;  conditional E-value: 0.0031
   TIGR02966 111 eqmRrdFvanvsHELrtPLtvlkGyletleeepeedde 148
                  q R++++  + H+  tP++vl+  l +++++ ++d  
  MMETSP1137-20121227|3397_1 262 LQQRNKYLGAICHDFGTPVSVLQMLLLMMRKRVMRDLR 299
                 4679*************************998744433 PP

  == domain 2    score: 40.9 bits;  conditional E-value: 6.6e-14
   TIGR02966 185 eeekvdvaelleelkkeaealseekehqielev..daavkvkgdeeeLrsalsNLveNAikytpeggeitvrweeeeeg.aelsvkDtGeGIaaehlprltERFYRvdksrsretgGtGLGLaIvkHvlerheaeLeieSelgkGstFsv 331
                 + +++++ael+++ ++ a+ + +++++++++++  +  + v+ d + +  +l N+ +N +k+t++g ++t+++e+  ++  +++v+DtG G++ae +p l+  F   ++    +   tGLGL   k   e   +++  + + g G+tF v
  MMETSP1137-20121227|3397_1 401 DCKPFEMAELMRKSASIARDTRKSERVTVHTQTsaELPLVVETDANWIFMILVNFASNSMKHTRQG-SVTITAERVGQShLRFEVSDTGCGVPAEFVPSLFQPFSSASTTA-TSVESTGLGLYHSKQLAEILGGSVGYRPNAGGGATFYV 548
                 678899*********99999999999999988833556778899999****************875.7899998887665************************9887654.56678*****9999999988888888888888888876 PP

>> TIGR02938  nifL_nitrog: nitrogen fixation negative regulator NifL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.4   0.0   5.5e-13   2.3e-10     317     492 ..     372     550 ..     351     552 .. 0.79

  Alignments for each domain:
  == domain 1    score: 37.4 bits;  conditional E-value: 5.5e-13
   TIGR02938 317 lqqalaageeale.alekviPqsdaeav....vpvnlnqvlrdvitllterllaaGivvdwqPaavlPavlGsesrlrslfkalvdnaieamaqkqvkrrelsist.aveddlirveiedsGPGiPadlrlkvfePffttk..assrkhvGmGlavaqeivakhaGlidvdddyreGcrivvel 492
                 +++a+ ag e le + +k+i  s   +     +p ++ +++r+   ++ +   ++ + v+ q +a lP v+ ++     +f  lv+ a ++m++   ++  ++i++ +v +  +r e+ d+G G+Pa+++   f+Pf ++   a+s +  G+Gl   +++    +G +   ++  +G    ve+
  MMETSP1137-20121227|3397_1 372 VRRAS-AGLELLElTRQKAIAFSAGGTLvpdcKPFEMAELMRKSASIARDTRKSERVTVHTQTSAELPLVVETDA--NWIFMILVNFASNSMKHT--RQGSVTITAeRVGQSHLRFEVSDTGCGVPAEFVPSLFQPFSSASttATSVESTGLGLYHSKQLAEILGGSVGYRPNAGGGATFYVEV 550
                 44443.444444424455666666554411116899*********************************986665..567888**********99..7788888763678889************************8765115568899*********9999999999999988888888876 PP

>> TIGR01386  cztS_silS_copS: heavy metal sensor kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.2      0.61   2.5e+02     235     266 ..     259     295 ..     206     339 .. 0.67
   2 !   29.6   0.0   1.8e-10   7.5e-08     345     457 .]     439     551 ..     394     551 .. 0.82

  Alignments for each domain:
  == domain 1    score: -1.8 bits;  conditional E-value: 0.61
   TIGR01386 235 edafqrlsqFsadlAHelRtPltnL.....ltqtqva 266
                 e+  q+ +++   + H+  tP++ L     +++  v+
  MMETSP1137-20121227|3397_1 259 EERLQQRNKYLGAICHDFGTPVSVLqmlllMMRKRVM 295
                 4445555555566666666666643111114444443 PP

  == domain 2    score: 29.6 bits;  conditional E-value: 1.8e-10
   TIGR01386 345 aevegdaqlfrRalsNLlsNAlrytpegstievrverradevevsventgkgipeeelsrlFdRFYRvdaarsnseegtGLGLaIvrsiveaHgGeveaes.adgktrfklkfp 457
                  +ve da+ +   l N  sN +++t +gs +    +  +++++ +v++tg g+p+e  + lF  F  + +    s e+tGLGL   + ++e+ gG+v     a g  +f +++p
  MMETSP1137-20121227|3397_1 439 LVVETDANWIFMILVNFASNSMKHTRQGSVTITAERVGQSHLRFEVSDTGCGVPAEFVPSLFQPFSSA-STTATSVESTGLGLYHSKQLAEILGGSVGYRPnAGGGATFYVEVP 551
                 4688999999999**************9976555555678***********************99755.555667788*******************99887888888888876 PP

>> TIGR03785  marine_sort_HK: proteobacterial dedicated sortase system histidine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.8   0.0   6.7e-09   2.8e-06     554     701 ..     401     549 ..     385     551 .. 0.87

  Alignments for each domain:
  == domain 1    score: 23.8 bits;  conditional E-value: 6.7e-09
   TIGR03785 554 ekedfdlsevlselvqgYqqlyeeqrfeleieeedl...vlrgspellaQllDKlvdNaieFskedglIevslkekkkealltveNeGpplPedlkeklFdsmvSvRaqkaqeqpHLGlGLyIvrliadfHqgeikaeNraqedgvvfevs 701
                 + ++f+++e++ +  +  +++ +++r+++++++++    v++  ++ +  +l    +N++  ++++++     +  +++   +v+  G  +P++   +lF+++ S    +a++ +  GlGLy ++ +a+  +g++  + +a   g +f v+
  MMETSP1137-20121227|3397_1 401 DCKPFEMAELMRKSASIARDTRKSERVTVHTQTSAElplVVETDANWIFMILVNFASNSMKHTRQGSVTITAERVGQSHLRFEVSDTGCGVPAEFVPSLFQPFSSAS-TTATSVESTGLGLYHSKQLAEILGGSVGYRPNAG-GGATFYVE 549
                 5689*************************99988655559***********************998875555566678899**********************9998.77888889*****************998776554.56666665 PP

>> TIGR02154  PhoB: phosphate regulon transcriptional regulatory protein PhoB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       1.8   7.2e+02     105     127 ..     403     425 ..     402     433 .. 0.77
   2 !   23.4   0.0   1.6e-08   6.5e-06       7     116 ..     765     886 ..     763     890 .. 0.68

  Alignments for each domain:
  == domain 1    score: -2.9 bits;  conditional E-value: 1.8
   TIGR02154 105 kPfspkellarikavlrrirpea 127
                 kPf + el+ +  ++ r +r+++
  MMETSP1137-20121227|3397_1 403 KPFEMAELMRKSASIARDTRKSE 425
                 9*******998888888776654 PP

  == domain 2    score: 23.4 bits;  conditional E-value: 1.6e-08
   TIGR02154   7 vvedeeairellaynl.ekegyevveaedaeealalikee.....lPdlilldWmlpgtsGielarrlrkee......etreiPiimltargee.edrvrgletGaddyvvkPfspkellari 116
                 +v+  e  r++++ +l   +g  +veae++eeal +++ e     +  ++l d+ + g  G e +r +r  e      +t+ + i+ l +r+++   r ++l++G dd + kPf +  l   +
  MMETSP1137-20121227|3397_1 765 IVDASELSRNVMREQLyAWAGVLPVEAESGEEALSMLTAEqqltrVSSVLLADY-VFGLDGCETCRAIRMWEqsrgvaQTERLRIVGLLTRSNDaAGRAACLDAGMDDAIAKPFNAATLYNTL 886
                 666666666666665513467788999999999988765411111344555555.668999999998876541111126778899977777665168******************99887655 PP

>> TIGR01052  top6b: DNA topoisomerase VI, B subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   0.0   1.1e-05    0.0044      53     102 ..     468     517 ..     448     586 .. 0.83

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 1.1e-05
   TIGR01052  53 ikveieklgkdhykvavednGpGiPeeyipkvfgkllagsklhriiqsrG 102
                 +++  e++g+ h +  v d G G+P e++p  f  +  +s +   + s G
  MMETSP1137-20121227|3397_1 468 VTITAERVGQSHLRFEVSDTGCGVPAEFVPSLFQPFSSASTTATSVESTG 517
                 67899****************************98877777665555544 PP

>> TIGR01387  cztR_silR_copR: heavy metal response regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.0      0.19        76      98     123 ..     402     427 ..     361     469 .. 0.72
   2 ?    9.3   0.0   0.00041      0.17      60     113 ..     836     889 ..     788     891 .] 0.76

  Alignments for each domain:
  == domain 1    score: 0.7 bits;  conditional E-value: 0.19
   TIGR01387  98 vkpfefaellarvrtllrrseskest 123
                  kpfe+ael+ +  ++ r +++ e  
  MMETSP1137-20121227|3397_1 402 CKPFEMAELMRKSASIARDTRKSERV 427
                 59*******98877777666554433 PP

  == domain 2    score: 9.3 bits;  conditional E-value: 0.00041
   TIGR01387  60 vlkalresaketpvllltardevadkvkGlelGaddylvkpfefaellarvrtl 113
                   + + ++++ + v llt  ++ a +   l+ G dd + kpf+ a l   +++l
  MMETSP1137-20121227|3397_1 836 QSRGVAQTERLRIVGLLTRSNDAAGRAACLDAGMDDAIAKPFNAATLYNTLQKL 889
                 33334445555667799**************************99998777665 PP

>> TIGR01554  major_cap_HK97: phage major capsid protein, HK97 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   2.7   0.00065      0.27      15     149 ..     295     438 ..     288     448 .. 0.69

  Alignments for each domain:
  == domain 1    score: 8.1 bits;  conditional E-value: 0.00065
   TIGR01554  15 lkkltedekeeeaeeekkekdalkaeidkleaeierleeaaaeeeakeaasgeagkeeeeeeeakeeaaea..fraylrrgddalaee.akalstgtdsdgGylvPeelsteIiellkeysplr......qlatvipvssgslt 149
                 +++l  + ++++++e+++e + +ka  ++  ++++++ +a+ ++ a +a+++ea+++++e+++  e  +++  +   +rr  + l+ +  + +++   s+gG lvP+    e  el+++  +++       ++tv + +s++l+
  MMETSP1137-20121227|3397_1 295 MRDLRRERQDAAEAEAAAEAELAKASANASPKDLAEEGAAMGDNIADRARQPEASASANEAARSLECFKDSarMLDLVRRASAGLELLeLTRQKAIAFSAGGTLVPDCKPFEMAELMRKSASIArdtrksERVTVHTQTSAELP 438
                 56677776667777777777789999999999999999998888888888888888888888777776666775556666666666555333334444699*****99888999999988888744444444445444445554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (891 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       174  (0.0424183); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                        10  (0.00243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.68u 0.13s 00:00:00.81 Elapsed: 00:00:00.83
# Mc/sec: 1416.90
//
Query:       MMETSP1137-20121227|3398_1  [L=285]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.8e-16   57.3   0.1    2.3e-15   54.8   0.0    1.9  1  TIGR01830 3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase
    3.1e-12   44.5   0.7    4.3e-11   40.8   0.5    2.1  1  TIGR01829 AcAcCoA_reduct: acetoacetyl-CoA reductase
    7.7e-11   39.8   0.3    3.1e-05   21.4   0.0    2.1  2  TIGR01832 kduD: 2-deoxy-D-gluconate 3-dehydrogenase
    9.8e-10   36.0   0.9    3.1e-08   31.1   0.6    2.1  1  TIGR03206 benzo_BadH: 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase
    2.5e-08   31.5   0.5    1.7e-05   22.3   0.3    2.4  1  TIGR03971 SDR_subfam_1: oxidoreductase, SDR family
    2.7e-08   31.4   0.1    5.8e-06   23.7   0.0    2.3  2  TIGR02415 23BDH: acetoin reductases
    6.5e-07   26.8   0.1    1.6e-06   25.5   0.1    1.6  1  TIGR01831 fabG_rel: putative 3-oxoacyl-(acyl-carrier-protein) reductase
    1.7e-06   25.4   0.2    0.00079   16.6   0.0    2.6  2  TIGR01963 PHB_DH: 3-hydroxybutyrate dehydrogenase
    3.8e-05   20.9   0.5    0.00027   18.1   0.1    2.1  2  TIGR03325 BphB_TodD: cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase
    0.00016   18.0   0.2    0.00099   15.4   0.1    1.9  2  TIGR02632 RhaD_aldol-ADH: rhamnulose-1-phosphate aldolase/alcohol dehydrogenase
    0.00016   18.7   0.8    0.00038   17.5   0.0    1.9  2  TIGR02685 pter_reduc_Leis: pteridine reductase
    0.00019   18.4   0.1    0.00028   17.8   0.0    1.2  1  TIGR02824 quinone_pig3: putative NAD(P)H quinone oxidoreductase, PIG3 family
  ------ inclusion threshold ------
      0.014   12.0   0.0      0.022   11.3   0.0    1.3  1  TIGR01751 crot-CoA-red: crotonyl-CoA reductase


Domain annotation for each model (and alignments):
>> TIGR01830  3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.8   0.0   7.4e-18   2.3e-15       1     237 [.      61     281 ..      61     283 .. 0.80

  Alignments for each domain:
  == domain 1    score: 54.8 bits;  conditional E-value: 7.4e-18
   TIGR01830   1 alvtGasrgiGkaiakklakegakvviterskee.kaeelaeelkeagvkaaavkldvsdeeevkelveeveeelgeidilvnnA..GitrDklllrmkeedwdevikvnLkgvfnvtkavlkkmikkrsGriinissvvgllGnagqanYaasKaGligltkslakElasrnitvnavaPGfietdmteklsekvkk...kileqiplkrlgkpeevaaavafLasdeasyitGqvlkvdGG 237
                 a++ G++ giG a++++l + ga+vv  +rs ++ +++++ +    +g   +  ++dv d++++      + +e    dilv+ A  G    + +l+m  + ++   +    g+ nv++  + ++ +  +G+i+ +s   +    agq+  aa            a+Ela +   +n+v+PG iet+m  + +e   +   k++++  + r gkpeeva+ ++f+ +   +++tG+++ vdGG
  MMETSP1137-20121227|3398_1  61 AVIFGGTSGIGMATVNALLALGAQVVAVSRSAQKyELSQFXHPCGTRG-GLSLKSCDVLDRAALA-----ALKEEAPFDILVSAAtgGSRALGPFLEMDIDGFKGSFDK-FWGYANVVQLGAPHLSE--KGAIVLVSGSPARKPRAGQVALAAVG---------AARELAPKR--INVVSPGVIETPMFGADDEARASklgKMTANNVIPRPGKPEEVAKGILFVIE--NEFVTGTTVDVDGG 281
                 6899********************999866544314445555555544.3556677777777665.....55667789****998545566678************995.789999**999999987..8********999*******9998853.........69****995..699**********8766655443122688889999***************98..78***********9 PP

>> TIGR01829  AcAcCoA_reduct: acetoacetyl-CoA reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.8   0.5   1.4e-13   4.3e-11       3     240 ..      61     282 ..      59     284 .. 0.80

  Alignments for each domain:
  == domain 1    score: 40.8 bits;  conditional E-value: 1.4e-13
   TIGR01829   3 alvtGglgGiGtaickrlakdGykvvanvapneera.kewlqekevegfdvavvkadvssfeeakaavakveaelGpvdvlvnna.Gitrd.avfkkmtkeqWeevidtnlnsvfnvtrpviegmlergfGriinissvnGlkGqfGqanysaakaGliGftkalaqegakkgvtvnviaPGyiatemvka...vredvlkkivaqiPvkrlgkpeeiaaavaflaseeagyvtGatlsvnGGl 240
                 a++ Gg+ GiG a  ++l + G +vva  ++ ++ + +++ +  + +   + + + dv +     aa+a   +e+ p d+lv +a G  r    f  m+ + ++   d  + +  nv +     + e+  G i+ +s     k ++Gq+  +a  a         a+e a k   +nv++PG i+t+m  a    r+  l k++a+  + r gkpee+a+ + f+  +   +vtG+t++v+GG 
  MMETSP1137-20121227|3398_1  61 AVIFGGTSGIGMATVNALLALGAQVVAVSRSAQKYElSQFXHPCGTR-GGLSLKSCDVLDR----AALAA-LKEEAPFDILVSAAtGGSRAlGPFLEMDIDGFKGSFDK-FWGYANVVQLGAPHLSEK--GAIVLVSGSPARKPRAGQVALAAVGA---------ARELAPKR--INVVSPGVIETPMFGAddeARASKLGKMTANNVIPRPGKPEEVAKGILFVIEN--EFVTGTTVDVDGGA 282
                 8999***********************99875444404455444444.5677777777654....33444.45678******987556665257***********9996.678889999999999998..689****************9887644.........88999987..599**********9872224455666789999999**************9966..5***********96 PP

>> TIGR01832  kduD: 2-deoxy-D-gluconate 3-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   0.0   9.7e-08   3.1e-05       2      88 ..      55     139 ..      54     146 .. 0.72
   2 !   16.6   0.0   2.9e-06    0.0009     142     246 ..     178     283 ..     166     284 .. 0.64

  Alignments for each domain:
  == domain 1    score: 21.4 bits;  conditional E-value: 9.7e-08
   TIGR01832   2 sleGkvalvtGantGlGqgiavglaeaGadivgvgiselsetqekvealGrkflslka...dladeeaakalvdeaveeagkidilvnna 88 
                  leG++a++ G  +G+G + + +l + Ga++v+v++s+++   ++  +   +   l++   d+ d +a +     a++e   +dilv  a
  MMETSP1137-20121227|3398_1  55 RLEGRKAVIFGGTSGIGMATVNALLALGAQVVAVSRSAQKYELSQFXHPCGTRGGLSLkscDVLDRAALA-----ALKEEAPFDILVSAA 139
                 59*********************************99888666666554444444443001444444444.....455555788888766 PP

  == domain 2    score: 16.6 bits;  conditional E-value: 2.9e-06
   TIGR01832 142 lsfqGGirvpsytasksavaGltkl....lanewakkginvnaiaPGyletnntealradekrnaaileriPag....rwGepedlagaavflassasdyvnGailavdGGwl 246
                 ls +G i + s + +++  aG   l     a e+a k inv  ++PG +et    a  +de+r+ + l ++ a     r G+pe++a  ++f+     ++v+G+++ vdGG l
  MMETSP1137-20121227|3398_1 178 LSEKGAIVLVSGSPARKPRAGQVALaavgAARELAPKRINV--VSPGVIETPMFGA--DDEARASK-LGKMTANnvipRPGKPEEVAKGILFVIE--NEFVTGTTVDVDGGAL 283
                 66666666655555555545444330101456777777665..89****9975433..44444443.3333332122288************986..69************76 PP

>> TIGR03206  benzo_BadH: 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.1   0.6   9.9e-11   3.1e-08       2     248 ..      57     282 ..      56     284 .. 0.75

  Alignments for each domain:
  == domain 1    score: 31.1 bits;  conditional E-value: 9.9e-11
   TIGR03206   2 kdkvaivtgggggiggaicrrfaeegakvavldlnaeaaekvaaairekggkaeav...avditdrasvdaavaaaeealgpvdvlvnna..gwdvlkpflktekaewerliainltgalymhhavlkgmverkagrivniasdaarvgssgeavyaackgglvafsktlarelarhgitvnvvcpgptdtalledvkseaekpeklieaftraiplgrlgkpddlagailflasddaafitgqvlsvsggl 248
                 +++ a++ gg+ gig a+   +   ga+v    +++ a +   ++  +  g+   +   ++d+ dra    a+aa  +   p d+lv  a  g   l+pfl+ +   ++     ++ g   +    ++ + e  +g iv ++   ar   +g+   aa            arela + i  nvv pg  +t+++    ++ +++ kl +       + r gkp+++a  ilf+      f+tg  + v gg 
  MMETSP1137-20121227|3398_1  57 EGRKAVIFGGTSGIGMATVNALLALGAQVVA--VSRSAQKYELSQFXHPCGTRGGLslkSCDVLDRA----ALAAL-KEEAPFDILVSAAtgGSRALGPFLEMDIDGFKGSFD-KFWGYANVVQLGAPHLSE--KGAIVLVSGSPARKPRAGQVALAAV---------GAARELAPKRI--NVVSPGVIETPMFGA--DDEARASKLGKMT-ANNVIPRPGKPEEVAKGILFVIE--NEFVTGTTVDVDGGA 282
                 67889**********************9765..5666666666666666665544411156666664....44444.5568******987557889******99777765543.456666666666777766..589*****9*****99999877764.........369****9986..99**********963..4455666665543.3444679*************986..57**********995 PP

>> TIGR03971  SDR_subfam_1: oxidoreductase, SDR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.3   0.3   5.3e-08   1.7e-05      93     265 .]     131     283 ..      56     283 .. 0.67

  Alignments for each domain:
  == domain 1    score: 22.3 bits;  conditional E-value: 5.3e-08
   TIGR03971  93 rldvvvana..GvlsygrafelseeqWdtvldvnlkGvWktvkavvPalierknGGsiiivssvaglkalpglahyaaakhGlvgltk.tlanelaeygirvnsihPtsvdtamiepeamrelfakreeaaraflpalpvsglvepedvadvvawlasdesryitGaqlavdaGal 265
                  +d++v+ a  G  + g+  e++ + ++   d  + G  ++v+   P+l e++   +i++vs + + k             G v+l+    a+ela+   r+n+++P  ++t+m  ++  +++    +++a++ +p  p     +pe+va+ ++++     +++tG+ + vd Gal
  MMETSP1137-20121227|3398_1 131 PFDILVSAAtgGSRALGPFLEMDIDGFKGSFD-KFWGYANVVQLGAPHLSEKG---AIVLVSGSPARKPRA----------GQVALAAvGAARELAPK--RINVVSPGVIETPMFGADDEARASKLGKMTANNVIP-RP----GKPEEVAKGILFVIE--NEFVTGTTVDVDGGAL 283
                 45666654433667777788888888888777.46677788888888887765...788888777766443..........44444431358899986..889************988888777766677666643.34....469*********985..569***********86 PP

>> TIGR02415  23BDH: acetoin reductases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.5   0.0    0.0067       2.1       2      33 ..      60      91 ..      59     165 .. 0.65
   2 !   23.7   0.0   1.8e-08   5.8e-06     163     251 ..     206     282 ..     198     284 .. 0.80

  Alignments for each domain:
  == domain 1    score: 5.5 bits;  conditional E-value: 0.0067
   TIGR02415  2 valvtGaaqGiGkaiaerLakdGfavavadln 33
                 a++ G++ GiG a ++ L + G +v+ +   
  MMETSP1137-20121227|3398_1 60 KAVIFGGTSGIGMATVNALLALGAQVVAVSRS 91
                699********************998766443 PP

  == domain 2    score: 23.7 bits;  conditional E-value: 1.8e-08
   TIGR02415 163 taakeLakkgitvnayaPGivktemreeideklaelagkeigekleefsseiklGresePedvaelvsflasedsdyitGqsilvdGGl 251
                  aa+eLa+k i     +PG+++t+m    de+ a   gk  +        +  + r  +Pe+va+ + f+     +++tG ++ vdGG 
  MMETSP1137-20121227|3398_1 206 GAARELAPKRIN--VVSPGVIETPMFGADDEARASKLGKMTA--------NNVIPRPGKPEEVAKGILFVIE--NEFVTGTTVDVDGGA 282
                 59******9975..578*********9887776655544333........334569***********99975..68***********95 PP

>> TIGR01831  fabG_rel: putative 3-oxoacyl-(acyl-carrier-protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.5   0.1     5e-09   1.6e-06       3     238 ..      63     282 ..      61     283 .. 0.79

  Alignments for each domain:
  == domain 1    score: 25.5 bits;  conditional E-value: 5e-09
   TIGR01831   3 vtgasrgigraialklaadgfeiavhyrsdradaeesvaairaqggnarllkfdvadrvavrevleadiaehgayygvvlnagiardaafpalseedwdavietnldgfynvihplvmpmirarkggriitlasvsgvmgnrgqvnysaakagligatkalavelakrkitvnciapglidtemvaevekdlkealklvpmk....rvgkaeevaalaaflmsddaayvtrqvisvnggm 238
                 + g + gig a  + l a g ++    rs +    +       + g  +l + dv dr a  ++ e       a + ++++a      a+  + e d d  ++ ++d f+   + + +   ++ + g i+ ++         gqv  +a     +ga+     ela ++i  n ++pg+i+t m    +++   +l  +  +    r gk+eeva  + f++     +vt   + v+gg 
  MMETSP1137-20121227|3398_1  63 IFGGTSGIGMATVNALLALGAQVVAVSRSAQKYELSQFXHPCGTRGGLSLKSCDVLDRAALAALKE------EAPFDILVSAATGGSRALGPFLEMDIDG-FKGSFDKFWGYANVVQLGAPHLSEKGAIVLVSGSPARKPRAGQVALAA-----VGAA----RELAPKRI--NVVSPGVIETPMFGADDEARASKLGKMTANnvipRPGKPEEVAKGILFVIE--NEFVTGTTVDVDGGA 282
                 568889**************99987777777666666665555666678999*****999876644......3667888888888888999999999997.688999999888888888888999999999988888888899998876.....5665....58899997..779**********88887777777555443122278*******98888775..5799*999***9996 PP

>> TIGR01963  PHB_DH: 3-hydroxybutyrate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0   2.5e-06   0.00079       2      86 ..      59     139 ..      58     159 .. 0.71
   2 !    6.0   0.0    0.0042       1.3     164     251 ..     207     281 ..     196     284 .. 0.68

  Alignments for each domain:
  == domain 1    score: 16.6 bits;  conditional E-value: 2.5e-06
   TIGR01963   2 kvalvtGaasGiglaiakelaaaGakvvvndleeeaaeaaa..keleeaggevlalkadvtkeeeiadlieavaaefgsldiLvnnA 86 
                 + a++ G +sGig+a  ++l a Ga+vv ++ ++++ e  +  + + ++gg     + dv + +++a     + +e +  diLv+ A
  MMETSP1137-20121227|3398_1  59 RKAVIFGGTSGIGMATVNALLALGAQVVAVSRSAQKYELSQfxHPCGTRGG-LSLKSCDVLDRAALA-----ALKEEAPFDILVSAA 139
                 7899*************************9998776654431034444433.344456666666554.....444555666666655 PP

  == domain 2    score: 6.0 bits;  conditional E-value: 0.0042
   TIGR01963 164 lAlEvAetgitanaicPgyvrtpLvekqiadqaktrgiseeqvvkevllkkqptkrfvtveevaelalflasdaaaqitGqalsldgG 251
                 +A E A + i  n++ Pg ++tp+  +   d+a++ ++ + ++ ++v+    p     ++eeva+ +lf++ +  + +tG+++ +dgG
  MMETSP1137-20121227|3398_1 207 AARELAPKRI--NVVSPGVIETPMFGAD--DEARASKLGKMTA-NNVIP--RP----GKPEEVAKGILFVIEN--EFVTGTTVDVDGG 281
                 5677787765..8899**999*999875..6666666554332.33332..22....3578888888888765..5688888888888 PP

>> TIGR03325  BphB_TodD: cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.1   8.6e-07   0.00027       2      49 ..      55     102 ..      54     122 .. 0.91
   2 ?    1.1   0.0      0.13        40     170     194 ..     208     231 ..     183     281 .. 0.85

  Alignments for each domain:
  == domain 1    score: 18.1 bits;  conditional E-value: 8.6e-07
   TIGR03325   2 klkdevvlvtggasglgralvdrfvaegarvavldksaagleeleaah 49 
                 +l+++ +++ gg+sg+g a v+  +a ga+v  + +sa++ e  +  h
  MMETSP1137-20121227|3398_1  55 RLEGRKAVIFGGTSGIGMATVNALLALGAQVVAVSRSAQKYELSQFXH 102
                 899999********************************9988766666 PP

  == domain 2    score: 1.1 bits;  conditional E-value: 0.13
   TIGR03325 170 ayelapyvrvngvapgglstdlrgl 194
                 a elap+ r+n v+pg + t + g 
  MMETSP1137-20121227|3398_1 208 ARELAPK-RINVVSPGVIETPMFGA 231
                 6789997.9*******999988776 PP

>> TIGR02632  RhaD_aldol-ADH: rhamnulose-1-phosphate aldolase/alcohol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.1   3.1e-06   0.00099     409     487 ..      53     130 ..      24     146 .. 0.84
   2 ?    0.6   0.0     0.091        29     635     670 ..     249     282 ..     202     284 .. 0.83

  Alignments for each domain:
  == domain 1    score: 15.4 bits;  conditional E-value: 3.1e-06
   TIGR02632 409 ekelarrvalvtGgasGiGrevarrlvdeGahvvladldaeaaeavaaelvdkfGadkavalk.ldvtdeeavkaafaev 487
                 e  l +r a++ Gg+sGiG ++   l + Ga vv +   a++ e    ++ +  G+  +++lk  dv d+ a++a  +e+
  MMETSP1137-20121227|3398_1  53 ELRLEGRKAVIFGGTSGIGMATVNALLALGAQVVAVSRSAQKYEL--SQFXHPCGTRGGLSLKsCDVLDRAALAALKEEA 130
                 55688999**************************99988777664..567778999999998746999998887765554 PP

  == domain 2    score: 0.6 bits;  conditional E-value: 0.091
   TIGR02632 635 lkrevlpediaeavfllasdklekttGliitvdaGv 670
                 + r+  pe++a+ +++++ ++    tG+++ vd+G 
  MMETSP1137-20121227|3398_1 249 IPRPGKPEEVAKGILFVIENE--FVTGTTVDVDGGA 282
                 556667999****99999775..57999******96 PP

>> TIGR02685  pter_reduc_Leis: pteridine reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.1      0.67   2.1e+02       4      31 ..      61      88 ..      59      97 .. 0.83
   2 !   17.5   0.0   1.2e-06   0.00038     186     264 ..     206     284 ..     197     285 .] 0.71

  Alignments for each domain:
  == domain 1    score: -1.4 bits;  conditional E-value: 0.67
   TIGR02685  4 alvtGaakriGrsiavklhqeGyrvvlh 31
                a++ G++  iG +   +l + G +vv  
  MMETSP1137-20121227|3398_1 61 AVIFGGTSGIGMATVNALLALGAQVVAV 88
                8999**************9999998864 PP

  == domain 2    score: 17.5 bits;  conditional E-value: 1.2e-06
   TIGR02685 186 saalelaslqirvngvapGlsllpdampeev.keeyrrkv...plgqreasaeqiadvviflvskkakyitGtiikvdGGlsl 264
                  aa ela++  r+n v+pG+   p   ++++ +     k+    +  r    e++a  ++f++    +++tGt++ vdGG  l
  MMETSP1137-20121227|3398_1 206 GAARELAPK--RINVVSPGVIETPMFGADDEaRASKLGKMtanNVIPRPGKPEEVAKGILFVIE--NEFVTGTTVDVDGGALL 284
                 5899****8..6688****988886443332033323333111344577789*********996..57************866 PP

>> TIGR02824  quinone_pig3: putative NAD(P)H quinone oxidoreductase, PIG3 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.0   8.8e-07   0.00028     139     181 ..      57      99 ..      43     138 .. 0.88

  Alignments for each domain:
  == domain 1    score: 17.8 bits;  conditional E-value: 8.8e-07
   TIGR02824 139 agetvLihggasGiGttaiqlakalgakvlvtagsdekleaae 181
                 +g +++i gg+sGiG +++    alga+v++  +s++k e ++
  MMETSP1137-20121227|3398_1  57 EGRKAVIFGGTSGIGMATVNALLALGAQVVAVSRSAQKYELSQ 99 
                 5999**********************************98654 PP

>> TIGR01751  crot-CoA-red: crotonyl-CoA reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   6.8e-05     0.022     183     230 ..      50      98 ..      40     133 .. 0.80

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 6.8e-05
   TIGR01751 183 kpaelk.pGdavLiWGaaGGLGsyaiqlaraaGgipvavvssedkaeia 230
                 +++el+ +G + +i+G++ G+G  ++    a G+  vav  s +k e+ 
  MMETSP1137-20121227|3398_1  50 RSEELRlEGRKAVIFGGTSGIGMATVNALLALGAQVVAVSRSAQKYELS 98 
                 555665479999*******************************998764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (285 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       151  (0.0368113); expected 82.0 (0.02)
Passed bias filter:                      135  (0.0329108); expected 82.0 (0.02)
Passed Vit filter:                        29  (0.00706972); expected 4.1 (0.001)
Passed Fwd filter:                        13  (0.00316919); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.38u 0.17s 00:00:00.55 Elapsed: 00:00:00.35
# Mc/sec: 1074.77
//
Query:       MMETSP1137-20121227|3399_1  [L=947]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (947 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        65  (0.0158459); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.52u 0.15s 00:00:00.67 Elapsed: 00:00:00.55
# Mc/sec: 2272.61
//
Query:       MMETSP1137-20121227|3400_1  [L=243]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (243 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        98  (0.0238908); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.12s 00:00:00.32 Elapsed: 00:00:00.42
# Mc/sec: 763.65
//
Query:       MMETSP1137-20121227|3401_1  [L=684]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (684 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        82  (0.0199902); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.13s 00:00:00.55 Elapsed: 00:00:00.55
# Mc/sec: 1641.46
//
Query:       MMETSP1137-20121227|3402_1  [L=485]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (485 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        84  (0.0204778); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.13s 00:00:00.48 Elapsed: 00:00:00.37
# Mc/sec: 1730.13
//
Query:       MMETSP1137-20121227|3404_1  [L=209]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (209 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       104  (0.0253535); expected 82.0 (0.02)
Passed bias filter:                       97  (0.023647); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.16s 00:00:00.36 Elapsed: 00:00:00.49
# Mc/sec: 562.97
//
Query:       MMETSP1137-20121227|3405_1  [L=483]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.1e-09   34.8   0.0    8.1e-09   33.4   0.0    1.6  1  TIGR01068 thioredoxin: thioredoxin
    5.6e-09   34.1   0.0    6.8e-08   30.6   0.0    2.3  2  TIGR01126 pdi_dom: protein disulfide-isomerase domain
    8.4e-09   33.3   0.0    7.6e-07   26.8   0.0    2.2  2  TIGR01130 ER_PDI_fam: protein disulfide isomerases


Domain annotation for each model (and alignments):
>> TIGR01068  thioredoxin: thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.4   0.0   5.9e-12   8.1e-09      15      79 ..      67     131 ..      57     146 .. 0.91

  Alignments for each domain:
  == domain 1    score: 33.4 bits;  conditional E-value: 5.9e-12
   TIGR01068  15 klvlvDfwAeWCgpCkmlaPvleelakeleekvkvvKlnvdeeqeiaakygirsiPtlllfkngk 79 
                 ++ +v f+A+WC   k++ P lee+a+    +v++++ln+   +e  + yg+ s P   +f+  +
  MMETSP1137-20121227|3405_1  67 NPLIVWFFAPWCKQSKLIRPALEEAARLAPPNVHFARLNTVLYPEAKELYGVYSYPSFKVFRGAR 131
                 4789*****************************************************99998765 PP

>> TIGR01126  pdi_dom: protein disulfide-isomerase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.6   0.0     5e-11   6.8e-08      16     102 ..      68     151 ..      56     154 .. 0.86
   2 ?    0.9   0.0     0.089   1.2e+02      50     103 ..     398     457 ..     383     459 .. 0.70

  Alignments for each domain:
  == domain 1    score: 30.6 bits;  conditional E-value: 5e-11
   TIGR01126  16 dvlvefyaPWCGhCkklaPeyeklakelkkeeekvkiakvdataekelaskfkvsgfPtlkffkkgkkepvdyeGeReaeelvefve 102
                  ++v f+aPWC   k + P  e++a+       +v+ a++++    e+++ ++v ++P  k+f+  +++ v    +R+ + l    +
  MMETSP1137-20121227|3405_1  68 PLIVWFFAPWCKQSKLIRPALEEAARLAP---PNVHFARLNTVLYPEAKELYGVYSYPSFKVFRGARQRWVAVPRNRSVDVLLRIAN 151
                 6799*******************997544...57******************************99998888777777777666555 PP

  == domain 2    score: 0.9 bits;  conditional E-value: 0.089
   TIGR01126  50 vkiakvdataekelaskfkvsg...fPtlkffkk....gkkepvdyeGeReaeelvefvee 103
                 v++a++d+ +   +a++f+vs     P l f+++    + +++  y+G+ + e +++f+ e
  MMETSP1137-20121227|3405_1 398 VVVADLDSGN-GGMAKRFGVSNlfeMPRLVFLDQtlsnDVNRQRPYKGQITREGVQDFLVE 457
                 6677777654.45667888886322588888765111144457789999999999999865 PP

>> TIGR01130  ER_PDI_fam: protein disulfide isomerases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.8   0.0   5.5e-10   7.6e-07      21      88 ..      69     132 ..      60     180 .. 0.82
   2 !    4.5   0.0    0.0034       4.6     190     299 ..     315     429 ..     274     481 .. 0.66

  Alignments for each domain:
  == domain 1    score: 26.8 bits;  conditional E-value: 5.5e-10
   TIGR01130  21 vLveFYAPWCGHCksLaPeYekAAeelkkkspkvklakvDateekelaqkygvsGyPtLkifrngess 88 
                 ++v F+APWC   k + P  e+AA+  +   p+v+ a+       e  + ygv  yP+ k+fr g ++
  MMETSP1137-20121227|3405_1  69 LIVWFFAPWCKQSKLIRPALEEAARL-AP--PNVHFARLNTVLYPEAKELYGVYSYPSFKVFR-GARQ 132
                 689********************974.44..5599999999999999999*************.5443 PP

  == domain 2    score: 4.5 bits;  conditional E-value: 0.0034
   TIGR01130 190 ekeekveeeletdvealekfvkkeslplvgeftketaakifeskplkvlllnveeskkkseellekflevakkfkgk...kvkfavadee.efgkeleelglkaek.apavvils 299
                 +++ +++++ ++++ +  ++++++ +pl+  f+ + +  + +s +  + +    + ++++ee+ + + +++ +f +     v++ vad +  +g +++ +g+++   +p +v l+
  MMETSP1137-20121227|3405_1 315 HTDLPTSSDNDAEEREQCAWLRSHRVPLLVDFKVDPSWAKRASYFDFMRMHALXFVRPSQEETAQTVSDAVAAFPRGsvlVVRVVVADLDsGNGGMAKRFGVSNLFeMPRLVFLD 429
                 3444555555666666778**************9987776666644444444444444558888888888888876657777777777541578889999998543355555444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (483 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        87  (0.0212092); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.34u 0.19s 00:00:00.53 Elapsed: 00:00:00.52
# Mc/sec: 1225.98
//
Query:       MMETSP1137-20121227|3406_1  [L=152]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (152 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        92  (0.0224281); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.13s 00:00:00.29 Elapsed: 00:00:00.28
# Mc/sec: 691.80
//
Query:       MMETSP1137-20121227|3407_1  [L=36]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.023   11.2   0.0      0.023   11.2   0.0    1.0  1  TIGR01015 hmgA: homogentisate 1,2-dioxygenase


Domain annotation for each model (and alignments):
>> TIGR01015  hmgA: homogentisate 1,2-dioxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   5.5e-06     0.023     210     233 ..       4      27 ..       1      35 [. 0.88

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 5.5e-06
   TIGR01015 210 GPiGanglanprdfeaPvaafedk 233
                  Pi  ng+  ++df aP a++ ++
  MMETSP1137-20121227|3407_1   4 QPIIKNGIQQAKDFDAPCAYYANR 27 
                 4999*****************876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (36 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        28  (0.00682594); expected 82.0 (0.02)
Passed bias filter:                       27  (0.00658216); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.10u 0.16s 00:00:00.26 Elapsed: 00:00:00.44
# Mc/sec: 107.99
//
Query:       MMETSP1137-20121227|3408_1  [L=358]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.5e-18   63.4   0.0    5.8e-14   49.9   0.0    2.2  2  TIGR03695 menH_SHCHC: 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase
      9e-15   52.6   0.0    1.5e-14   51.8   0.0    1.3  1  TIGR02427 protocat_pcaD: 3-oxoadipate enol-lactonase
    8.3e-12   42.5   2.3    2.6e-11   40.9   0.4    2.0  2  TIGR03056 bchO_mg_che_rel: putative magnesium chelatase accessory protein
    3.4e-11   40.8   0.1    3.2e-10   37.6   0.0    2.0  2  TIGR03611 RutD: pyrimidine utilization protein D
    3.6e-10   37.7   0.3    3.4e-08   31.2   0.1    2.2  2  TIGR01738 bioH: putative pimeloyl-BioC--CoA transferase BioH
    3.1e-07   26.8   0.7    8.2e-06   22.1   0.0    2.1  2  TIGR03502 lipase_Pla1_cef: extracellular lipase, Pla-1/cef family
     0.0011   16.4   0.0      0.056   10.8   0.0    2.1  2  TIGR01250 pro_imino_pep_2: proline-specific peptidases
     0.0012   16.0   0.3     0.0026   14.9   0.0    1.6  2  TIGR03100 hydr1_PEP: exosortase A system-associated hydrolase 1
     0.0046   13.9   0.1     0.0046   13.9   0.1    1.6  2  TIGR01392 homoserO_Ac_trn: homoserine O-acetyltransferase
  ------ inclusion threshold ------
      0.052   10.4   0.0        1.2    6.0   0.0    2.1  2  TIGR01607 PST-A: Plasmodium subtelomeric family


Domain annotation for each model (and alignments):
>> TIGR03695  menH_SHCHC: 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.9   0.0   1.4e-16   5.8e-14       3      98 ..      49     144 ..      47     178 .. 0.90
   2 !   11.5   0.0   7.5e-05     0.031     214     251 ..     284     321 ..     280     322 .. 0.91

  Alignments for each domain:
  == domain 1    score: 49.9 bits;  conditional E-value: 1.4e-16
   TIGR03695   3 pvlvlLHGflgskedwqalieele.ekfsvlalDLpgHGkskslkekeakdfeeaaqellkelleklkiekviLvGYSlGGRialalaleaperleg 98 
                 p+ +++HG+ +ske+w+ + +e++ + +++la+DL gHG+s      e  ++++ a+++++  +++    ++++vG S+GG +a++la+   +r+++
  MMETSP1137-20121227|3408_1  49 PTTIFIHGLDSSKETWKGILAEMAkQGLPALAFDLRGHGESPLG-APEDFSTDALASDVIAAAEAHGVRAPYVVVGHSMGGVVAMQLAAIDAQRVQN 144
                 6789**************9988854899*************976.5577788899999999999999999*******************99998874 PP

  == domain 2    score: 11.5 bits;  conditional E-value: 7.5e-05
   TIGR03695 214 kemqkllpalklevieeaGHnihlenpeafakileefl 251
                 ++m+++lp  +++++e+aGH ih    ++f+++l+ +l
  MMETSP1137-20121227|3408_1 284 EDMRRRLPYTRVRLFEDAGHSIHNSARAEFMHALRGVL 321
                 6899999*************************999876 PP

>> TIGR02427  protocat_pcaD: 3-oxoadipate enol-lactonase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.8   0.0   3.6e-17   1.5e-14      12     106 ..      47     144 ..      37     183 .. 0.87

  Alignments for each domain:
  == domain 1    score: 51.8 bits;  conditional E-value: 3.6e-17
   TIGR02427  12 dkpvlvlinSLGtdlrlwdkvlealtkd.frvlryDkrGHGlSdvpe.gpysiedladdvlallDalgiek.aavcGlSlGGliaqaLaarrpdrvea 106
                 + p+ ++i  L ++ + w+ +l++++k+ +  l++D rGHG+S +++  ++s + la+dv+a ++a g++   +v+G S+GG++a++Laa  ++rv++
  MMETSP1137-20121227|3408_1  47 HCPTTIFIHGLDSSKETWKGILAEMAKQgLPALAFDLRGHGESPLGApEDFSTDALASDVIAAAEAHGVRApYVVVGHSMGGVVAMQLAAIDAQRVQN 144
                 56899*******************9865389************99872579******************8636899*******************985 PP

>> TIGR03056  bchO_mg_che_rel: putative magnesium chelatase accessory protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.9   0.4   6.2e-14   2.6e-11      27     117 ..      47     139 ..      18     151 .. 0.88
   2 ?    0.9   0.0       0.1        42     235     267 ..     279     311 ..     275     324 .. 0.81

  Alignments for each domain:
  == domain 1    score: 40.9 bits;  conditional E-value: 6.2e-14
   TIGR03056  27 aGPvllllhGagasshsfrklvpllaar.frvvapdlPGhGftratarfrfslkamaedlakllaaedls.PdaviGhsaGaaialrlaldlp 117
                   P+ +++hG+ +s  +++ +++ +a++    +a dl GhG +  +a   fs +a+a d+ +  +a +++ P +v+Ghs G+ +a++la + +
  MMETSP1137-20121227|3408_1  47 HCPTTIFIHGLDSSKETWKGILAEMAKQgLPALAFDLRGHGESPLGAPEDFSTDALASDVIAAAEAHGVRaPYVVVGHSMGGVVAMQLAAIDA 139
                 569**********************9874789****************************9999999986599***************98765 PP

  == domain 2    score: 0.9 bits;  conditional E-value: 0.1
   TIGR03056 235 ppdvskeaatrlplatlrevpGlGhlvheedad 267
                 + +  +++ +rlp + +r  + +Gh +h+ + +
  MMETSP1137-20121227|3408_1 279 AGEAXEDMRRRLPYTRVRLFEDAGHSIHNSARA 311
                 5566788999******************98755 PP

>> TIGR03611  RutD: pyrimidine utilization protein D
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.6   0.0   7.9e-13   3.2e-10      12     106 ..      47     143 ..      37     153 .. 0.90
   2 ?    0.8   0.0      0.13        55     218     255 ..     284     321 ..     273     344 .. 0.68

  Alignments for each domain:
  == domain 1    score: 37.6 bits;  conditional E-value: 7.9e-13
   TIGR03611  12 daevvvlssGLGGsgsywapqlevl.eqefrvvvyDhrGtgrspeelaedysiaalaadvlelldaldiek.ahvvGhalGgliglelalrkperla 106
                 + ++ +++ GL  s + w+  l+ + +q    + +D rG g+sp   +ed+s +ala+dv ++ +a +++  + vvGh++Gg+++++la   ++r++
  MMETSP1137-20121227|3408_1  47 HCPTTIFIHGLDSSKETWKGILAEMaKQGLPALAFDLRGHGESPLGAPEDFSTDALASDVIAAAEAHGVRApYVVVGHSMGGVVAMQLAAIDAQRVQ 143
                 568899**************9976625779**************************************97637899**************9999986 PP

  == domain 2    score: 0.8 bits;  conditional E-value: 0.13
   TIGR03611 218 seLaekLPdaelklleyGghasnvtdpetfnellldfL 255
                 + + ++LP +++ l e  gh++      +f ++l+  L
  MMETSP1137-20121227|3408_1 284 EDMRRRLPYTRVRLFEDAGHSIHNSARAEFMHALRGVL 321
                 45556666666666666666666555555666555555 PP

>> TIGR01738  bioH: putative pimeloyl-BioC--CoA transferase BioH
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.2   0.1   8.3e-11   3.4e-08       7     107 ..      51     159 ..      46     183 .. 0.74
   2 ?    4.6   0.0     0.011       4.7     206     242 ..     282     318 ..     273     321 .. 0.89

  Alignments for each domain:
  == domain 1    score: 31.2 bits;  conditional E-value: 8.3e-11
   TIGR01738   7 lvLihGWglnaevfadlveeL.sahftlslvDLPGyGdsaelra..lslaevaeailaqap.....akaiwlGWsLGGLvalhlalthpdkvrsLvlvasspkfaared 107
                  + ihG    +e ++ +  e+ ++  +  + DL G+G+s+   +  +s +++a  ++a+a+     a+ +++G s+GG+va++la+  +++v++      s++++ + d
  MMETSP1137-20121227|3408_1  51 TIFIHGLDSSKETWKGILAEMaKQGLPALAFDLRGHGESPLGAPedFSTDALASDVIAAAEahgvrAPYVVVGHSMGGVVAMQLAAIDAQRVQNGEAALLSACIVEDMD 159
                 578************987776156689999********987665224555666666655551111156689*********************98777667777776655 PP

  == domain 2    score: 4.6 bits;  conditional E-value: 0.011
   TIGR01738 206 vvealdklapqsellvlekaahaPflshaeafaallr 242
                   e++ +++p++++ ++e+a+h+   s  ++f ++lr
  MMETSP1137-20121227|3408_1 282 AXEDMRRRLPYTRVRLFEDAGHSIHNSARAEFMHALR 318
                 678899*********************9999999987 PP

>> TIGR03502  lipase_Pla1_cef: extracellular lipase, Pla-1/cef family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.1   0.0     2e-08   8.2e-06     431     494 ..      34      96 ..      25     113 .. 0.82
   2 ?    3.1   0.1     0.011       4.4     554     581 ..     121     148 ..     102     156 .. 0.84

  Alignments for each domain:
  == domain 1    score: 22.1 bits;  conditional E-value: 2e-08
   TIGR03502 431 raglgl.etltkPedGWpvvivqHGitgaKenalavagtlaaaGvAtiaiDlPlHGeRsldadad 494
                  +++ l  t+  P    p++i+ HG+ ++Ke+   + +++a++G+  +a Dl  HGe  l+a  d
  MMETSP1137-20121227|3408_1  34 AKTVELaSTMHSPHC--PTTIFIHGLDSSKETWKGILAEMAKQGLPALAFDLRGHGESPLGAPED 96 
                 444444468889998..****************************************98876555 PP

  == domain 2    score: 3.1 bits;  conditional E-value: 0.011
   TIGR03502 554 flghSLGgIvgtsvvaaantplkdptld 581
                 ++ghS+Gg+v+++++a+  + +++ +++
  MMETSP1137-20121227|3408_1 121 VVGHSMGGVVAMQLAAIDAQRVQNGEAA 148
                 79**************988888776665 PP

>> TIGR01250  pro_imino_pep_2: proline-specific peptidases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.8   0.0   0.00014     0.056      30     122 ..      53     143 ..      42     183 .. 0.78
   2 ?    3.7   0.0     0.021       8.5     247     284 ..     281     318 ..     272     322 .. 0.89

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 0.00014
   TIGR01250  30 vlHGGPgssheyles.lkellkegvevilYDQLGsgkSdqPddsdeklltidrfvdEleevrekLaldk.fyllgqSwGglLaqeYalkyqqhlk 122
                  +HG   ss e ++  l+e++k+g+  + +D  G g+S     +d   + +d    ++ + +e+ +++    ++g+S Gg+ a++ a   +q ++
  MMETSP1137-20121227|3408_1  53 FIHGL-DSSKETWKGiLAEMAKQGLPALAFDLRGHGESPLGAPED---FSTDALASDVIAAAEAHGVRApYVVVGHSMGGVVAMQLAAIDAQRVQ 143
                 56654.45666676516677777*************997654433...899***************99945578**********99876666554 PP

  == domain 2    score: 3.7 bits;  conditional E-value: 0.021
   TIGR01250 247 eaaremqekiaksrlvvfedgshltmieepeeylkllk 284
                 ea + m+ +++ +r+++fed++h      ++e+++ l+
  MMETSP1137-20121227|3408_1 281 EAXEDMRRRLPYTRVRLFEDAGHSIHNSARAEFMHALR 318
                 67899*******************99999999999886 PP

>> TIGR03100  hydr1_PEP: exosortase A system-associated hydrolase 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   6.3e-06    0.0026      52      98 ..      70     119 ..      61     144 .. 0.79
   2 ?   -3.1   0.0         2   8.3e+02     184     218 ..     310     344 ..     283     349 .. 0.59

  Alignments for each domain:
  == domain 1    score: 14.9 bits;  conditional E-value: 6.3e-06
   TIGR03100  52 alAeaGlpvlRfDyrGmGDse.gelstF..edieaDiaAAidafleaape 98 
                 ++A++Glp l fD rG G+s  g    F  ++  +D+ AA +a   +ap 
  MMETSP1137-20121227|3408_1  70 EMAKQGLPALAFDLRGHGESPlGAPEDFstDALASDVIAAAEAHGVRAPY 119
                 79******************634444552157889999999988777775 PP

  == domain 2    score: -3.1 bits;  conditional E-value: 2
   TIGR03100 184 rqkgkevaeeelaerlkaglerfkgkvliiLsgkD 218
                 r++  ++ ++ la    a+ ++ +++   iL+++D
  MMETSP1137-20121227|3408_1 310 RAEFMHALRGVLADAASAARSADTAREDAILADRD 344
                 44444444444555555555555555555555555 PP

>> TIGR01392  homoserO_Ac_trn: homoserine O-acetyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.1   1.1e-05    0.0046     121     155 ..     110     144 ..      98     163 .. 0.86
   2 ?   -4.1   0.2       3.4   1.4e+03      52      60 ..     225     233 ..     207     234 .. 0.73

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 1.1e-05
   TIGR01392 121 ldsLgveklaavvGgSlGGmqalewalsypervkk 155
                 +++ gv+   +vvG S+GG+ a+++a+ +++rv++
  MMETSP1137-20121227|3408_1 110 AEAHGVRAPYVVVGHSMGGVVAMQLAAIDAQRVQN 144
                 567899999********************999987 PP

  == domain 2    score: -4.1 bits;  conditional E-value: 3.4
   TIGR01392  52 eedkGWWde 60 
                 ++ +GWW++
  MMETSP1137-20121227|3408_1 225 SDGSGWWSD 233
                 356699987 PP

>> TIGR01607  PST-A: Plasmodium subtelomeric family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.0     0.039        16      68      88 ..      69      89 ..      60      93 .. 0.86
   2 ?    6.0   0.0    0.0028       1.2     139     161 ..     114     136 ..      94     158 .. 0.76

  Alignments for each domain:
  == domain 1    score: 2.3 bits;  conditional E-value: 0.039
   TIGR01607 68 eklnkeGysvyaldlqghGes 88
                 ++ k+G    a+dl+ghGes
  MMETSP1137-20121227|3408_1 69 AEMAKQGLPALAFDLRGHGES 89
                578899**************9 PP

  == domain 2    score: 6.0 bits;  conditional E-value: 0.0028
   TIGR01607 139 kkrlplyivGlsmGgnialrvle 161
                   r p  +vG+smGg +a+++  
  MMETSP1137-20121227|3408_1 114 GVRAPYVVVGHSMGGVVAMQLAA 136
                 3489************9987654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (358 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       127  (0.0309605); expected 82.0 (0.02)
Passed bias filter:                       96  (0.0234032); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                        10  (0.00243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.38u 0.17s 00:00:00.55 Elapsed: 00:00:00.41
# Mc/sec: 1152.49
//
Query:       MMETSP1137-20121227|3409_1  [L=298]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0059   13.8   0.0     0.0083   13.3   0.0    1.2  1  TIGR03516 ppisom_GldI: peptidyl-prolyl isomerase, gliding motility-associated
  ------ inclusion threshold ------
      0.016   11.8   0.0      0.021   11.5   0.0    1.1  1  TIGR00115 tig: trigger factor


Domain annotation for each model (and alignments):
>> TIGR03516  ppisom_GldI: peptidyl-prolyl isomerase, gliding motility-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   0.0   4.1e-06    0.0083      78     175 ..      86     185 ..      83     187 .. 0.86

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 4.1e-06
   TIGR03516  78 kdttetktpetgDlvsfeyeikaldgdviy..skeelgpktykvdqedlisGlrdglklmkegeevtfllPsykayGyyGdedkigsnlpikstvtllni 175
                 k ++++ +p+ g  v+ +ye k l  ++ +  s++   p  +++ + ++i G   gl  m+ ge++t++   + ayG  G    i +  +++ +v ll +
  MMETSP1137-20121227|3409_1  86 KVEGSGSVPQRGATVEVHYEGKLLGSETQFdsSRKRGKPFSFTLGEGKVIGGWEVGLSSMRVGEKATLVCAPQYAYGAKGMPPVIPPSSTLEFEVELLGV 185
                 56788999999********9999988887632445556778899999**********************************9999999999999998765 PP

>> TIGR00115  tig: trigger factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0     1e-05     0.021     148     205 ..      93     154 ..      81     189 .. 0.80

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 1e-05
   TIGR00115 148 aaekgDivtidfegkvdGea..feggka..edfelelgsgqfipgfeeqlvGmkaGeekeik 205
                   + g +v + +egk  G +  f++  +  + f+++lg+g++i g e +l  m +Ge++++ 
  MMETSP1137-20121227|3409_1  93 VPQRGATVEVHYEGKLLGSEtqFDSSRKrgKPFSFTLGEGKVIGGWEVGLSSMRVGEKATLV 154
                 56788899999999886655115444333388**************************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (298 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        70  (0.0170648); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.23u 0.16s 00:00:00.39 Elapsed: 00:00:00.35
# Mc/sec: 1123.79
//
Query:       MMETSP1137-20121227|3410_1  [L=439]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (439 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       145  (0.0353486); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.16s 00:00:00.48 Elapsed: 00:00:00.41
# Mc/sec: 1413.25
//
Query:       MMETSP1137-20121227|3411_1  [L=105]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (105 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        51  (0.012433); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:00.38
# Mc/sec: 364.71
//
Query:       MMETSP1137-20121227|3412_1  [L=244]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (244 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        85  (0.0207216); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.11s 00:00:00.33 Elapsed: 00:00:00.39
# Mc/sec: 825.78
//
Query:       MMETSP1137-20121227|3413_1  [L=472]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (472 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        77  (0.0187713); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.16s 00:00:00.47 Elapsed: 00:00:00.48
# Mc/sec: 1297.89
//
Query:       MMETSP1137-20121227|3414_1  [L=431]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      2e-19   66.8   0.0    2.8e-19   66.3   0.0    1.1  1  TIGR03903 TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
    9.5e-07   26.3   0.0    1.5e-06   25.7   0.0    1.3  1  TIGR03724 arch_bud32: Kae1-associated kinase Bud32


Domain annotation for each model (and alignments):
>> TIGR03903  TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.3   0.0   1.4e-22   2.8e-19       6     200 ..      41     231 ..      35     245 .. 0.84

  Alignments for each domain:
  == domain 1    score: 66.3 bits;  conditional E-value: 1.4e-22
   TIGR03903   6 vaikllRedaaeeerlvaR.FrReialCarLshPnivaLlDsGeaedg.llFavFeyveGrtlrevLaadGaLpaaetgrLmlqvLDalaaahdaGvvhRDLkPqnimvsaadveshakvLDFGigaLlpgvedadeatltrttevlGsPaYaaPeqLRg.epvtaksDlYaWGLivleCLtGkrvvqGasvaevlyk 200
                 va+k + +   +++   +R Fr  + l a   h ni++L +  +ae++  ++ vF+y+e   l +v+ a+  L + +   ++ q+L al   h+ G+vhRDLkP n+++     e   kv DFG++  l   ++  e  +   t+++ +  Y aPe + g ++ t + D++a G i+ e   Gk+++ G s+ + l k
  MMETSP1137-20121227|3414_1  41 VALKKIFDA-FQNATDAQRtFREIMYLQAMTGHENIIRLQNVLKAENDkDIYLVFDYMET-DLHAVIHAK-ILEPVHKQFIVYQMLKALKYCHSGGLVHRDLKPSNLLLNE---ECLLKVADFGLARSLRALNE-SEGSASVLTDYVATRWYRAPEIILGsNSYTYAVDMWAVGCIIAEMFIGKPMIPGSSTMNQLEK 231
                 666666554.4444444551666667778889**********999876269*******95.688998886.89999********************************975...5678999***********99.88999999*************866527889**************************9876665 PP

>> TIGR03724  arch_bud32: Kae1-associated kinase Bud32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.7   0.0   7.2e-10   1.5e-06      41     156 ..      56     180 ..      22     207 .. 0.72

  Alignments for each domain:
  == domain 1    score: 25.7 bits;  conditional E-value: 7.2e-10
   TIGR03724  41 keRtrkEarllseak..kagvntPvvydvdpee.kkivmeyiegkklkdlleekel......ellkevGelvgklHkagivhgDlttsNiivkddkly.liDfGLgkkskevedkavDlhvlkrsl 156
                 ++Rt +E+ +l+++   ++ ++   v++ ++++   +v++y+e ++l+ ++++k l       +++++ +++  +H+ g+vh Dl +sN++++++ l+ + DfGL++  + +++      vl + +
  MMETSP1137-20121227|3414_1  56 AQRTFREIMYLQAMTghENIIRLQNVLKAENDKdIYLVFDYME-TDLHAVIHAKILepvhkqFIVYQMLKALKYCHSGGLVHRDLKPSNLLLNEECLLkVADFGLARSLRALNESEGSASVLTDYV 180
                 5666677666666541144466666666655441456777765.56677776655556666578999*************************766544278*****99777776665666666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (431 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       137  (0.0333983); expected 82.0 (0.02)
Passed bias filter:                      103  (0.0251097); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.35u 0.17s 00:00:00.52 Elapsed: 00:00:00.39
# Mc/sec: 1458.65
//
Query:       MMETSP1137-20121227|3415_1  [L=465]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (465 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       131  (0.0319356); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.18s 00:00:00.51 Elapsed: 00:00:00.45
# Mc/sec: 1363.89
//
Query:       MMETSP1137-20121227|3417_1  [L=448]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.6e-57  191.9   0.0    4.6e-57  191.6   0.0    1.0  1  TIGR01357 aroB: 3-dehydroquinate synthase


Domain annotation for each model (and alignments):
>> TIGR01357  aroB: 3-dehydroquinate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  191.6   0.0   1.1e-60   4.6e-57      10     327 ..      31     367 ..      25     377 .. 0.85

  Alignments for each domain:
  == domain 1    score: 191.6 bits;  conditional E-value: 1.1e-60
   TIGR01357  10 lkklveelae.kasklvvitdeeveklvaekleealksl.gvevlvlvvpdgeesKsletvaklldqlleeklerksvlvaiGGGvvgDlaGFvAatylRGirlvqvPTtllamvDssvGGKtginlplgkNliGafyqPkaVlidlkvletlperelreGmaEviKhgliadaelfeelekneklllkl..........aelealeelikrsievKaevVeeDekesglRalLNfGHtlgHaiEallkyk.lsHGeaVaiGmvveaklseklgllkaellerlvallkklglptklkkkls.veellkallkDKK.....negskiklvlleeiGk 327
                  ++l e++++ +a++++++t+e+v+k +++  + +  s  +  v+++v+p+g+ +Ks+e++++l+++ ++ ++++k+v+va+GGG+++ +a   A++ +RG++lv vPTt+lam D     Kt i +++ kN +G+fy P+ +lid+ + +tlp +el +G++E+ K +++ +++  e   +   +++++          ++  +l +l++ +i+ K+ev + D +e+   ++  +GHt+ HaiE++++ + ++HG  V++Gm +  + +e+lg+++a ++ ++ a++k l  + +l++ l  +e +++  +kD K     +  ++i  v+l+++G+
  MMETSP1137-20121227|3417_1  31 QAELLEHVRSmNADRILLVTEENVDKSHGKYWQPLIDSPdAPPVEKIVLPPGDAAKSWEHLHELVRWNFDVGATKKTVIVAFGGGALLNVAHLYASIAYRGMKLVSVPTTFLAMHDVVTSLKTSICFDGRKNNVGTFYAPQKILIDVGFCRTLPPAELFSGLGELAKNACLFGRDHAEGFVNALTTTEQQggqtdpanfsMDIMTLLSLVRLGIKAKMEVLAIDAYEKQFGMIFEYGHTVSHAIEKAYGDGkIPHGLGVVYGMLFCSYAAEQLGIMSAADRVQHDAVCKLLVDKWSLPTPLPsAELVYSLAMKDSKrgiagEAPNEISDVMLTRMGD 367
                 45667777774569**************999998887765899***********************************************************************************************************************************98877777666555557778999977555678899**************************************99888*************************888888877777776666666654405556666778877332111234555566666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (448 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        74  (0.01804); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.16s 00:00:00.50 Elapsed: 00:00:00.43
# Mc/sec: 1375.14
//
Query:       MMETSP1137-20121227|3418_1  [L=374]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (374 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       118  (0.0287665); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.15s 00:00:00.43 Elapsed: 00:00:00.39
# Mc/sec: 1265.74
//
Query:       MMETSP1137-20121227|3419_1  [L=373]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (373 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        79  (0.0192589); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.14s 00:00:00.41 Elapsed: 00:00:00.31
# Mc/sec: 1588.13
//
Query:       MMETSP1137-20121227|3420_1  [L=372]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (372 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       137  (0.0333983); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.15s 00:00:00.43 Elapsed: 00:00:00.35
# Mc/sec: 1402.86
//
Query:       MMETSP1137-20121227|3421_1  [L=437]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (437 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        63  (0.0153584); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.16s 00:00:00.46 Elapsed: 00:00:00.52
# Mc/sec: 1109.22
//
Query:       MMETSP1137-20121227|3423_1  [L=376]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.015   11.2   0.0      0.023   10.6   0.0    1.2  1  TIGR04075 bacter_Pnkp: polynucleotide kinase-phosphatase


Domain annotation for each model (and alignments):
>> TIGR04075  bacter_Pnkp: polynucleotide kinase-phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   5.7e-06     0.023     184     262 ..      41     117 ..      30     133 .. 0.64

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 5.7e-06
   TIGR04075 184 iiGdvhGCldeleelleklGyeveeeeegkavevthpegrkavflGdlvdrGpdspdvlrlvmsmvkagaa.....lcvpGnhe 262
                  i d+hG l    e l+  G   e+ +        +  +r+av lGd+ drG++s ++l    ++ ++ aa       + Gnhe
  MMETSP1137-20121227|3423_1  41 AIADLHGDLVHTLEALRLCGLVDEHGH-------WSAGSRRAVQLGDVLDRGNASIATLEKLWELRDEAAAaggefTLLIGNHE 117
                 566666644444444444443222221.......24568*******************98877665443331111145678888 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (376 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        75  (0.0182838); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.30u 0.16s 00:00:00.46 Elapsed: 00:00:00.30
# Mc/sec: 1654.26
//
Query:       MMETSP1137-20121227|3424_1  [L=140]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (140 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        47  (0.0114578); expected 82.0 (0.02)
Passed bias filter:                       41  (0.00999512); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.16s 00:00:00.32 Elapsed: 00:00:00.23
# Mc/sec: 803.41
//
Query:       MMETSP1137-20121227|3425_1  [L=342]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (342 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        58  (0.0141394); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.17s 00:00:00.43 Elapsed: 00:00:00.41
# Mc/sec: 1100.98
//
Query:       MMETSP1137-20121227|3426_1  [L=524]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (524 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       132  (0.0321794); expected 82.0 (0.02)
Passed bias filter:                      107  (0.0260848); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.15s 00:00:00.52 Elapsed: 00:00:01.42
# Mc/sec: 487.06
//
Query:       MMETSP1137-20121227|3427_1  [L=121]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (121 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        41  (0.00999512); expected 82.0 (0.02)
Passed bias filter:                       38  (0.00926377); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.15s 00:00:00.29 Elapsed: 00:00:00.28
# Mc/sec: 550.71
//
Query:       MMETSP1137-20121227|3428_1  [L=255]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (255 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        99  (0.0241346); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.16s 00:00:00.40 Elapsed: 00:00:00.46
# Mc/sec: 731.68
//
Query:       MMETSP1137-20121227|3429_1  [L=252]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (252 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       121  (0.0294978); expected 82.0 (0.02)
Passed bias filter:                       98  (0.0238908); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.15s 00:00:00.35 Elapsed: 00:00:00.42
# Mc/sec: 791.93
//
Query:       MMETSP1137-20121227|3430_1  [L=620]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   3.1e-143  475.8   0.0   3.9e-143  475.5   0.0    1.1  1  TIGR01124 ilvA_2Cterm: threonine ammonia-lyase, biosynthetic
    1.6e-63  212.7   0.1    1.4e-60  203.1   0.0    2.1  2  TIGR02079 THD1: threonine dehydratase
    8.5e-57  190.7   0.0    1.2e-56  190.1   0.0    1.2  1  TIGR01127 ilvA_1Cterm: threonine dehydratase
    9.3e-49  163.9   1.0    1.4e-48  163.3   0.7    1.3  1  TIGR02991 ectoine_eutB: ectoine utilization protein EutB
    2.7e-14   50.9   0.0      5e-14   50.1   0.0    1.4  1  TIGR01139 cysK: cysteine synthase A
    4.8e-14   50.2   0.0    9.8e-14   49.2   0.0    1.5  1  TIGR01136 cysKM: cysteine synthases
    9.9e-10   35.8   0.2    1.3e-08   32.1   0.0    2.7  2  TIGR03945 PLP_SbnA_fam: 2,3-diaminopropionate biosynthesis protein SbnA
    2.3e-08   31.4   0.0    8.6e-08   29.5   0.0    1.8  1  TIGR00260 thrC: threonine synthase
    7.4e-07   26.6   0.0    1.3e-06   25.8   0.0    1.4  1  TIGR01275 ACC_deam_rel: pyridoxal phosphate-dependent enzymes, D-cysteine desulfhydrase family
    9.2e-07   25.7   0.0    1.8e-06   24.8   0.0    1.4  1  TIGR01137 cysta_beta: cystathionine beta-synthase
    1.7e-06   25.0   0.0    2.7e-06   24.3   0.0    1.3  1  TIGR01747 diampropi_NH3ly: diaminopropionate ammonia-lyase family
      3e-06   24.8   0.0    6.8e-06   23.6   0.0    1.5  1  TIGR01138 cysM: cysteine synthase B
    1.2e-05   21.9   0.0    2.3e-05   20.9   0.0    1.4  1  TIGR03528 2_3_DAP_am_ly: diaminopropionate ammonia-lyase
     0.0043   14.0   0.0       0.01   12.7   0.0    1.6  1  TIGR00263 trpB: tryptophan synthase, beta subunit
     0.0048   13.5   0.0      0.012   12.2   0.0    1.5  1  TIGR02035 D_Ser_am_lyase: D-serine ammonia-lyase


Domain annotation for each model (and alignments):
>> TIGR01124  ilvA_2Cterm: threonine ammonia-lyase, biosynthetic
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  475.5   0.0  1.4e-145  3.9e-143      17     493 ..       2     504 ..       1     509 [. 0.92

  Alignments for each domain:
  == domain 1    score: 475.5 bits;  conditional E-value: 1.4e-145
   TIGR01124  17 etplekaaklserlknrvllkredlqpvfsfklrGaynkmaqlsaeqkakGviaasaGnhaqGvalsakklGvk.avivmpettpeikvdavkafGgevvlhGenydeakakalelaqekg..ltfiapfddplviaGqGtvalellrqv...........eedldavfvpvGGGGliaGvaalvkqllpeikvigveaedsaalkqaleaGervkldqvGlfadGvavkevGdetfrlckeylddivlvdtdevcaaikdvfedtravlepaGalalaGlkkyvakkg.....iedktlvailsGa.nlnfdrlryvseraelGeqreallavtipeekGsllkfvevlGeraitefnyrlad.dekahifvGv.....qlaeeeerkellarleeagykvvdltddelaklhvrylvGGraakvenerlysfefper.pGallkfletlqaewnislfhyrnhGadyGrvlvglevpdeeaeefeqflaelgyryedetenp 493
                 e+p+++ + ls+rl+  v++kredl p fs+++rGayn + +l ++   k v++ s G     +a++a++lG+   vivmpe tp ++++a+k  G++v ++G++  ea+++a +la+e g  ltf+ap+ddp viaGq t +le+ rq            +++lda+fv  GG  liaG+aa vkq++p+ kvigve+e+ + l+++l  G+rv l +   f+dG a++++G e frlc+e++ddiv+v  de+caa++d+fedtra+lepaGa+++aGlkk++a+++      ++ + v+i+s a n++fd lr+++era +Ge++e l+ +  pe+ G++ ++ + +  ra+tef yr+++ deka +++ v      l+ e+e + ++  l+  + k  d+t +e+ak+h ryl GGr   v  er+++fefpe   Gal kfl+ l +ew ++l+hyrnhG++ G+vl+g++vp+ ++++f+++l++lgy+++d   +p
  MMETSP1137-20121227|3430_1   2 ESPMQHCSGLSQRLGACVHIKREDLLPGFSYRIRGAYNLLDSLRRDG-VKSVVTFSIGSQGHSLAIAAQRLGLDpPVIVMPERTPAVRIEAIKRVGAKVHVYGQTLLEAQEEAERLAKESGgkLTFVAPHDDPRVIAGQATAGLEVTRQIgaaveaaggsiSDHLDAIFVCTGGSSLIAGIAASVKQIMPHTKVIGVEPENNNLLQRSLLEGHRVVLPEPSHFVDGAAMQQLGPEVFRLCNELVDDIVTVSDDEICAAVRDCFEDTRAMLEPAGAISVAGLKKWLASRHkapegQSNGNYVVISSDAsNIEFDILRFIAERASMGEHKERLFVLESPEKSGAFFRMYQAVQPRAVTEFIYRFCPtDEKALVYMCVlqadaTLTPEQETQGVVDALKAIDVKATDVTANEMAKTHARYLAGGRHGGVAGERVLRFEFPETgSGALRKFLTALGQEWFVTLLHYRNHGGQVGKVLAGIKVPEGKEQAFDSMLNDLGYTFHDXDVEP 504
                 89*****************************************9886.689*********************9637*******************************************9777*************************96333333332225799***********************************************************************************************************************9875411111456689999997659*****************************************************8626789999987433223456799***************************************************757*********************************************************987655 PP

>> TIGR02079  THD1: threonine dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  203.1   0.0     5e-63   1.4e-60      16     405 ..       2     411 ..       1     415 [. 0.86
   2 !    7.7   0.0     0.001      0.28     333     389 ..     436     493 ..     423     506 .. 0.79

  Alignments for each domain:
  == domain 1    score: 203.1 bits;  conditional E-value: 5e-63
   TIGR02079  16 etPlqknerlsekykaeiylkredlqevrsyklrGaynklkqlsdeelekgvvcasaGnhaqGvayacrklgvk.gtvfmPvttPkqkvdkvklfGgefievilvGdtfdeaaaaakkavekegk..tlipPfddkdiieGqgtvaveileqleee..........kidlvlvpvGGGGlisGvtsylkekskktkiigvePeGapslkaslkagevvtldkidkfvdGaavkrvGdlnfkalkkvvdevtlveegavcstildlynkegivaePaGalsiaaleels.eeik.......gktvvcvvsGgnndierleeikersllyeGlkhyflvkfpqraGalreflndvlGPndditkfeyvkksnretGevliGielsd.....kedfeGllerlkaadieyeainenetl 405
                 e+P+q+ + ls++ +a +++kredl    sy++rGayn l +l  ++  k+vv  s G     +a a ++lg+   ++ mP  tP  +++ +k  G    +v + G+t  ea+ +a++ +++ g   t++ P dd+++i+Gq+t ++e+  q+  +          + d ++v  GG  li+G+++ +k++ ++tk+igvePe    l+ sl +g+ v l +  +fvdGaa++++G   f+ ++++vd++++v+++++c+++ d +++   ++ePaGa+s+a+l++   ++ k       g+ vv     +n ++  l  i er+ + e  ++ f+++ p ++Ga+ ++ + v  P   +t+f y    + e+  v + +  +d     +++ +G+++ lka+d++ ++++ ne++
  MMETSP1137-20121227|3430_1   2 ESPMQHCSGLSQRLGACVHIKREDLLPGFSYRIRGAYNLLDSLRRDGV-KSVVTFSIGSQGHSLAIAAQRLGLDpPVIVMPERTPAVRIEAIKRVGA---KVHVYGQTLLEAQEEAERLAKESGGklTFVAPHDDPRVIAGQATAGLEVTRQIGAAveaaggsisdHLDAIFVCTGGSSLIAGIAASVKQIMPHTKVIGVEPENNNLLQRSLLEGHRVVLPEPSHFVDGAAMQQLGPEVFRLCNELVDDIVTVSDDEICAAVRDCFEDTRAMLEPAGAISVAGLKKWLaSRHKapegqsnGNYVVISSDASNIEFDILRFIAERASMGEHKERLFVLESPEKSGAFFRMYQAV-QPR-AVTEFIYRFCPTDEKALVYMCVLQADatltpEQETQGVVDALKAIDVKATDVTANEMA 411
                 6799***************************************99887.578999******************725789****************97...6899****************998642279********************9997543222333344468********************************************************************************************************************975323222111111133444444568989999999**************************9999855.565.69999999888888887777765444122227899*****************999986 PP

  == domain 2    score: 7.7 bits;  conditional E-value: 0.001
   TIGR02079 333 fpqr.aGalreflndvlGPndditkfeyvkksnretGevliGielsd..kedfeGllerl 389
                 fp   +Galr+fl   lG +  +t ++y  ++  + G+vl Gi++ +  ++ f+ +l+ l
  MMETSP1137-20121227|3430_1 436 FPETgSGALRKFLT-ALGQEWFVTLLHYR-NHGGQVGKVLAGIKVPEgkEQAFDSMLNDL 493
                 554327*******9.9**********995.677899********9642156788888765 PP

>> TIGR01127  ilvA_1Cterm: threonine dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  190.1   0.0   4.5e-59   1.2e-56       2     296 ..       4     320 ..       3     354 .. 0.85

  Alignments for each domain:
  == domain 1    score: 190.1 bits;  conditional E-value: 4.5e-59
   TIGR01127   2 pleksstlsditgaevylklenlqktGsfkirGalnkiaklseeekkrGvvaasaGnhaqGvalaakvfgik.akivmPesaplskvkatksyGaeviLhGadfDeayklaeelaeeeg..rvfvhafdDefviaGqGtlgleiledlp............dvdtvivPvGGGGLisGvasavkklnpevkviGveaeaapslveslkegkikavesvktiaDGiavkkpgdltfeivkelvDevvavdeeeiakaillLlerakivaegaGavgvaav...leekvd.vkgkk..vavvvs..GGnidlnllekiie 296
                 p+++ s ls+  ga v++k e l    s++irGa+n +  l  ++  + vv+ s G      a+aa++ g++  +ivmPe +p  +++a+k  Ga+v + G+++ ea++ ae+la+e+g  ++fv + dD+ viaGq t gle++ +++            ++d + v  GG  Li+G+a++vk+++p+ kviGve e+ + l++sl eg+ +   + +   DG a+++ g+  f + +elvD++v+v+++ei+ a+   +e ++ + e+aGa++va +   l+++ + ++g+     vv+s    ni+  +l  i e
  MMETSP1137-20121227|3430_1   4 PMQHCSGLSQRLGACVHIKREDLLPGFSYRIRGAYNLLDSLRRDG-VKSVVTFSIGSQGHSLAIAAQRLGLDpPVIVMPERTPAVRIEAIKRVGAKVHVYGQTLLEAQEEAERLAKESGgkLTFVAPHDDPRVIAGQATAGLEVTRQIGaaveaaggsisdHLDAIFVCTGGSSLIAGIAASVKQIMPHTKVIGVEPENNNLLQRSLLEGHRVVLPEPSHFVDGAAMQQLGPEVFRLCNELVDDIVTVSDDEICAAVRDCFEDTRAMLEPAGAISVAGLkkwLASRHKaPEGQSngNYVVISsdASNIEFDILRFIAE 320
                 7889999********************************998876.578**********************83599*****************************************974479*********************9987533333333333358******************************************************************************************************************97333333333222222112233331145666666666655 PP

>> TIGR02991  ectoine_eutB: ectoine utilization protein EutB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  163.3   0.7   5.2e-51   1.4e-48      20     311 ..       3     315 ..       1     320 [. 0.86

  Alignments for each domain:
  == domain 1    score: 163.3 bits;  conditional E-value: 5.2e-51
   TIGR02991  20 tplveseslsellGvpvllklesrqttGsfklrGatnavlslsdaeraaGvvaastGnhGralayaakkegv.ravicmselvpqnkvdeirrlGaevrivGrsqddaqeeverlvkerG..lvmlppfdhadivaGqGtlglevveqvp............dlalvlvplsGGGlasGvavavkalkpatrviGvsmerGaamkaslkaGrpvlveelptladslGGGiGldnrvtfalckelldeivllsedeiaagirhayaeereiveGaGavGiaal...laGkik.....vkGpivvlvs.Grnidmdlh 311
                 +p+ + + ls++lG  v++k e   +  s+++rGa n + sl   +  + vv+ s G  G +la aa++ g+ + vi m e  p+ ++++i+r Ga+v++ G++  +aqee erl ke G  l+ + p d++ ++aGq t glev  q+             +l+ ++v   G  l++G+a++vk + p+t+viGv  e    ++ sl  G+ v + e   + d  G  +       f+lc+el+d+iv +s+dei a++r  + + r ++e aGa+ +a l   la + k      +G+ vv+ s   ni+ d+ 
  MMETSP1137-20121227|3430_1   3 SPMQHCSGLSQRLGACVHIKREDLLPGFSYRIRGAYNLLDSLRR-DGVKSVVTFSIGSQGHSLAIAAQRLGLdPPVIVMPERTPAVRIEAIKRVGAKVHVYGQTLLEAQEEAERLAKESGgkLTFVAPHDDPRVIAGQATAGLEVTRQIGaaveaaggsisdHLDAIFVCTGGSSLIAGIAASVKQIMPHTKVIGVEPENNNLLQRSLLEGHRVVLPEPSHFVD--GAAMQQLGPEVFRLCNELVDDIVTVSDDEICAAVRDCFEDTRAMLEPAGAISVAGLkkwLASRHKapegqSNGNYVVISSdASNIEFDIL 315
                 6899999***********************************85.55778*********************83579******************************************98889**********************998742222222222224678999999**********************************************999999..55666666778***************************************9988764447776652222235666666652357777765 PP

>> TIGR01139  cysK: cysteine synthase A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.1   0.0   1.8e-16     5e-14      15     252 ..      11     265 ..       2     309 .. 0.80

  Alignments for each domain:
  == domain 1    score: 50.1 bits;  conditional E-value: 1.8e-16
   TIGR01139  15 laeeakaevlvkleslnPsssvkdrialamiedaekegllkkgktiveatsGntGialamvaaargyk.liltmpetmslerrkllkayGaelvLtdgaegmkgaiekaeelveetpnkylllkqfenpanpeihrkttapeilkdldgk...........ldafvagvGtGGtitGvgevlkekkpdikvvavePaespvlsgg.........kpgphkiqGigagfi.Pkv..Ldkevidevikvsdeeaietarrlake 252
                 l +   a v +k e l P++s + r a++++ +  ++g+    k +v    G  G +la+ a   g+   +++mpe     r + +k  Ga++ +    +    a e+ae l++e++ k  ++   ++p    + ++t + e+ +++  +           lda+   +G    i+G++  +k+  p+ kv++veP++ ++l+++          + +h + G + + + P+v  L +e++d++++vsd+e  +  r   ++
  MMETSP1137-20121227|3430_1  11 LSQRLGACVHIKREDLLPGFSYRIRGAYNLLDSLRRDGV----KSVVTFSIGSQGHSLAIAAQRLGLDpPVIVMPERTPAVRIEAIKRVGAKVHVYG--QTLLEAQEEAERLAKESGGKLTFVAPHDDPRV-IAGQATAGLEVTRQIGAAveaaggsisdhLDAIFVCTGGSSLIAGIAASVKQIMPHTKVIGVEPENNNLLQRSlleghrvvlPEPSHFVDGAAMQQLgPEVfrLCNELVDDIVTVSDDEICAAVRDCFED 265
                 556677889*********************988777775....56899999*********99999*973699********************98764..4567788***********99999999888864.568999******998765222223333335666666666667*****************************999999999976667999998865443887446789************99888877665 PP

>> TIGR01136  cysKM: cysteine synthases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.2   0.0   3.6e-16   9.8e-14       9     252 ..       4     265 ..       2     309 .. 0.79

  Alignments for each domain:
  == domain 1    score: 49.2 bits;  conditional E-value: 3.6e-16
   TIGR01136   9 Plvrln.lseelkaevlvKlEsrnPsgSvKdRialsmildAekrgllkkgktiieatSGNtGiaLAmvaaakgyk.lilvmpetmslERrkllkayGaelvlteaeegmkgaiekakelaeeepekyvllkqfeNpaNpeaHrkttgpEilkdtdgk...........idafvagvGtgGtitGvgrvlkekkpnvkivavePaespvlseg.........kpgphkiqgig.agfiPkild..eelldevikvededaietarrlake 252
                 P+ +   ls++l a v +K E+  P++S + R a++++ +  ++g+    k ++    G  G +LA++a + g+   ++vmpe + + R +++k  Ga++ +    +    a e+a+ la+e+++k +++  ++ p    a ++t g E+ +++              +da+   +G +  i G++  +k+  p+ k+++veP++ ++l+++          + +h + g   ++  P+++   +el+d++++v+d++ ++  r   ++
  MMETSP1137-20121227|3430_1   4 PMQHCSgLSQRLGACVHIKREDLLPGFSYRIRGAYNLLDSLRRDGV----KSVVTFSIGSQGHSLAIAAQRLGLDpPVIVMPERTPAVRIEAIKRVGAKVHVYG--QTLLEAQEEAERLAKESGGKLTFVAPHDDPRV-IAGQATAGLEVTRQIGAAveaaggsisdhLDAIFVCTGGSSLIAGIAASVKQIMPHTKVIGVEPENNNLLQRSlleghrvvlPEPSHFVDGAAmQQLGPEVFRlcNELVDDIVTVSDDEICAAVRDCFED 265
                 556666678889999**********************988777775....57899999***************973689********************98765..4567799**************99999999975.567999******998654222222332235666666677778***************************99987777877764456777765426677999863379***********999999887665 PP

>> TIGR03945  PLP_SbnA_fam: 2,3-diaminopropionate biosynthesis protein SbnA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.1   0.0   4.7e-11   1.3e-08      20     278 ..      15     289 ..       2     310 .. 0.74
   2 ?   -2.1   0.0       1.2   3.3e+02     223     266 ..     382     426 ..     379     431 .. 0.83

  Alignments for each domain:
  == domain 1    score: 32.1 bits;  conditional E-value: 4.7e-11
   TIGR03945  20 ekvelfaKlEglnpagSvKdrtAlallekaikegeikpgttiiESsSGnlaiaLamvcaalGlkf.icvvDpkiseanlkllralgaevev.....veekdetggyLkaRlarvrellaeipdavwlNQYaneanaeahyettaeeileelk.evdylfvgvsttGtlaGvarrlrekspevkvvavDavGSvifgge..pgkRli...pGl...Gasvv...pelld..eslidevvkvseletvaacrelleregilaGgSsGtvvaavkkllakie 278
                   + +++K E l p+ S + r A++ll++  ++g     + ++  s G+ + +La+ +++lGl+  ++v+  ++ ++ ++ ++++ga+v+v     +e ++e+  + k+   ++  ++ +++  v   Q +    ++  +   +e+   +++ ++d +fv ++ +  +aG+a  +++ +p++kv++v+ +   ++  +  +g+R +   p +   Ga+++   pe+++  ++l+d++v+vs+ e  aa r+ +e +  +     +  va++kk+la+ +
  MMETSP1137-20121227|3430_1  15 LGACVHIKREDLLPGFSYRIRGAYNLLDSLRRDGV----KSVVTFSIGSQGHSLAIAAQRLGLDPpVIVMPERTPAVRIEAIKRVGAKVHVygqtlLEAQEEAERLAKESGGKLTFVAPHDDPRVIAGQATAGLEVTRQIGAAVEAAGGSISdHLDAIFVCTGGSSLIAGIAASVKQIMPHTKVIGVEPENNNLLQRSllEGHRVVlpePSHfvdGAAMQqlgPEVFRlcNELVDDIVTVSDDEICAAVRDCFEDTRAMLEPAGAISVAGLKKWLASRH 289
                 5567899*********************9998884....679999******************862666677888899***********982222133334444444444556777777888889999999999999888888888889998899********************************99887777654223445442222223336666544477764337889999999999999999998887777776677777888888877633 PP

  == domain 2    score: -2.1 bits;  conditional E-value: 1.2
   TIGR03945 223 vvpelldeslidevvkvseletvaacrellereg.ilaGgSsGtv 266
                  +pe  ++  +d++  ++   t ++++e++++++ +laGg  G+v
  MMETSP1137-20121227|3430_1 382 LTPEQETQGVVDALKAIDVKATDVTANEMAKTHArYLAGGRHGGV 426
                 678888888999999999999999999999998757899998887 PP

>> TIGR00260  thrC: threonine synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.5   0.0   3.1e-10   8.6e-08      26     314 ..       6     288 ..       2     302 .. 0.78

  Alignments for each domain:
  == domain 1    score: 29.5 bits;  conditional E-value: 3.1e-10
   TIGR00260  26 frspklaeevgaenlyvkelfhgPtlaFKDrglqfvavlltkalelgnetvlcAtsGdtgaaaaealagkanvkv.vvLyPkgkispvkeklvtalaenakvlaikGdFDdaqdlvkeifedke.klklnsvNsinparieaqktyafeiveqlgk..........espdkvvvpvp.sgnfgailkGflekkelglpieklaiaaegaadivrrflksg..dlepkedkeTlstAmdignpsnveralelarrslgnledlkesvsdeeileaikklaeeegyllephtavavaalkklvekg 314
                  ++  l++++ga  +++k + + P ++++ rg     +ll  ++ +g++ v++ + G  g ++a   a + +++  v+++P+  +   + ++      +akv     +  +aq+  + +++++  kl +++     p  i++q t+  e+  q+g           ++ d + v  + s+++  i +  ++  +     + +++++e++ + ++r l +g   ++p  +      Am+ + p       e++r  ++ ++d+  +vsd+ei  a++   e    +lep++a++va+lkk +++ 
  MMETSP1137-20121227|3430_1   6 QHCSGLSQRLGA-CVHIKREDLLPGFSYRIRG---AYNLLDSLRRDGVKSVVTFSIGSQGHSLA-IAAQRLGLDPpVIVMPER-TP--AVRIEAIKRVGAKVHVYGQTLLEAQEEAERLAKESGgKLTFVAP-HDDPRVIAGQATAGLEVTRQIGAaveaaggsisDHLDAIFVCTGgSSLIAGIAASVKQI-MP-H-TKVIGVEPENN-NLLQRSLLEGhrVVLPEPSHFVDGAAMQQLGP-------EVFRLCNELVDDI-VTVSDDEICAAVRDCFEDTRAMLEPAGAISVAGLKKWLASR 288
                 577788999999.9******************...99***************************.777788888625555654.66..56777777777777666667889999999999876635555554.478******************99898888888777889999999888888888883333.33.3.4899******9.66666655552333333333444456665555.......4677777777777.778*********************************98865 PP

>> TIGR01275  ACC_deam_rel: pyridoxal phosphate-dependent enzymes, D-cysteine desulfhydrase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.8   0.0   4.8e-09   1.3e-06       7     213 ..       2     199 ..       1     214 [. 0.71

  Alignments for each domain:
  == domain 1    score: 25.8 bits;  conditional E-value: 4.8e-09
   TIGR01275   7 ptPiqylkrlseklGaeiyikrDDltglelsGnkirkLefLlaealkkgadtvitvGaiqsnharatalvakklgLkavllLrkskkvadedeelkGnlLldkllgaevrvvsaeeyeeiealleelkeklekeGkkpyviPvGGsnslGalGyveavleiaeqlnle....s.ev..kfdsivvaaGsgGtiaGlslGlsaLkeevesvgvav 213
                 + P+q+   ls++lGa ++ikr+Dl +      +ir    Ll    ++g + v+t       h    a++a++lgL++ +++  ++++ +    ++      k +ga+v+v+ +  + e ++ +e l+   e  Gk  +v P      +   G   a le+  q+       +  +  ++d+i v +G +  iaG+++ ++ ++++ + +gv+ 
  MMETSP1137-20121227|3430_1   2 ESPMQHCSGLSQRLGACVHIKREDLLP--GFSYRIRGAYNLLDSLRRDGVKSVVTFSIGSQGHS--LAIAAQRLGLDPPVIVM-PERTPA----VRIE--AIKRVGAKVHVYGQT-LLEAQEEAERLA--KESGGKLTFVAPHDDPRVI--AGQATAGLEVTRQIGAAveaaGgSIsdHLDAIFVCTGGSSLIAGIAASVKQIMPHTKVIGVEP 199
                 68**********************954..56689998766665555678999999865444565..68899******999887.555443....2222..234589999888654.334444445444..5678889999998776666..46667777777776433111122223379****************************998865 PP

>> TIGR01137  cysta_beta: cystathionine beta-synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.8   0.0   6.4e-09   1.8e-06      13     265 ..       4     266 ..       2     309 .. 0.73

  Alignments for each domain:
  == domain 1    score: 24.8 bits;  conditional E-value: 6.4e-09
   TIGR01137  13 PlvrlnkvskglkaevlakveffnaGGsvkdrialrmiedaeksGrlkpgdtliePtsGntGiGlalvaaikGyk.ciivlPekvseekvdvlkalGaeivrtPtaaafdsPesyigvakrlekeipgavildqyanasnPlahydttgeeileqleg...........kldalvagvGtGGtitGiarklkekedkvrivGadPeGsilaepeelnktekt.....dykveGiGy.dfiPtvld..rkvvdeiiktddkesfkmarrlikee 265
                 P+     +s+ l a v  k e + +G s + r a ++++   ++G     + ++    G  G  la++a++ G    +iv+Pe+    +++ +k +Ga + +       ++ e     a+rl ke  g       ++     a   t+g e+ +q+             +lda+    G    i+Gia  +k+  ++ +++G++Pe   l +   l + ++      ++ v+G     + P+v+    ++vd+i+ ++d+e     r   ++ 
  MMETSP1137-20121227|3430_1   4 PMQHCSGLSQRLGACVHIKREDLLPGFSYRIRGAYNLLDSLRRDGV----KSVVTFSIGSQGHSLAIAAQRLGLDpPVIVMPERTPAVRIEAIKRVGAKVHVYGQT-LLEAQE----EAERLAKESGGKLTFVAPHDDPRVIAGQATAGLEVTRQIGAaveaaggsisdHLDAIFVCTGGSSLIAGIAASVKQIMPHTKVIGVEPENNNLLQRSLL-EGHRVvlpepSHFVDGAAMqQLGPEVFRlcNELVDDIVTVSDDEICAAVRDCFEDT 266
                 5555566666677777778888888888888888888888888774....56788899***************9736**********************9665443.333333....489999999998877766666667889999999999998777777888888889998888888889***********************9888777433.33332111115779998751567999753379999999999998877777666554 PP

>> TIGR01747  diampropi_NH3ly: diaminopropionate ammonia-lyase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.3   0.0   9.8e-09   2.7e-06      97     254 ..      52     210 ..      37     232 .. 0.73

  Alignments for each domain:
  == domain 1    score: 24.3 bits;  conditional E-value: 9.8e-09
   TIGR01747  97 fvtatdGnhGrGvawaaeklGqk.avvympkGsaqeraeniekeGaevtitdlnyddavrlankmaqekgwvlvqdtaweGyekiptwimqGyatlaveaveql....relgselpth...vllqaGvGslaGavlGylveafsenipniivveadkadclyqsav 254
                  vt + G  G  +a aa++lG++  v++mp  +  +r e+i++ Ga+v +      +a   a++ a+e g++l   +  +        ++ G at  +e ++q+       g +   h   +++ +G  sl  ++   + + +++   ++i ve+++ + l +s +
  MMETSP1137-20121227|3430_1  52 VVTFSIGSQGHSLAIAAQRLGLDpPVIVMPERTPAVRIEAIKRVGAKVHVYGQTLLEAQEEAERLAKESGGKLTFVAPHDDPR-----VIAGQATAGLEVTRQIgaavEAAGGSISDHldaIFVCTGGSSLIAGIAASVKQIMPH--TKVIGVEPENNNLLQRSLL 210
                 56778899*************98469********************************************9987666655544.....345566666666655521112223333333222677777777777776666666654..3466788888887777755 PP

>> TIGR01138  cysM: cysteine synthase B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.6   0.0   2.5e-08   6.8e-06      22     201 ..      16     202 ..       3     219 .. 0.77

  Alignments for each domain:
  == domain 1    score: 23.6 bits;  conditional E-value: 2.5e-08
   TIGR01138  22 dsevlvklegnnpaGsvkdrpalsmiveaekrGeikeGdvlieatsGntGialamvaalkGyk.vkllmpdnvseerkaalkayGaelilvdkeeGmeGardlarelvrkgeek..lldqfnnpdnpkahytstGieiwqq.......tkGrithfvssl..GttG..timGvsrflkeqnpavqivGlqpaeg 201
                 ++ v +k e   p+ s + r a  + +++++r  +k    ++  + G  G +la++a  +G+    ++mp+ + + r +a+k  Ga++ +    + +  a++ a++l+++  +k  ++  +++p    a   ++G e+ +q       ++G+i+  + ++   t+G   i G++  +k+  p  +++G++p++ 
  MMETSP1137-20121227|3430_1  16 GACVHIKREDLLPGFSYRIRGAYNL-LDSLRRDGVK---SVVTFSIGSQGHSLAIAAQRLGLDpPVIVMPERTPAVRIEAIKRVGAKVHVYG--QTLLEAQEEAERLAKESGGKltFVAPHDDP-RVIAGQATAGLEVTRQigaaveaAGGSISDHLDAIfvCTGGssLIAGIAASVKQIMPHTKVIGVEPENN 202
                 5668899999999999999999875.6888888887...5788899***************9625789*******************98764..445567777888888888883233444444.345888999****99833333334689986655543344442269*********************976 PP

>> TIGR03528  2_3_DAP_am_ly: diaminopropionate ammonia-lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   0.0   8.5e-08   2.3e-05     117     272 ..      53     209 ..      41     232 .. 0.76

  Alignments for each domain:
  == domain 1    score: 20.9 bits;  conditional E-value: 8.5e-08
   TIGR03528 117 vtatdGnhGrGvawaanklgqk.svvymPkGsaqerlenirkeGaeatitdlnyddavrlaakkaeekGwvvvqdtaweGyeeiPtwimqGyttlalealeqlkel....gvekpth...vllqaGvGslagavlGylaskfgeerpiivivepdkadclyrsa 272
                 vt + G  G  +a aa++lg    v+ mP  +  +r+e+i++ Ga++ +      +a   a++ a+e+G ++         ++ P+ i  G +t  le++ q+ +     g + + h   +++ +G  sl +++   + + + +   +++ vep++ + l rs 
  MMETSP1137-20121227|3430_1  53 VTFSIGSQGHSLAIAAQRLGLDpPVIVMPERTPAVRIEAIKRVGAKVHVYGQTLLEAQEEAERLAKESGGKLTF----VAPHDDPRVI-AGQATAGLEVTRQIGAAveaaGGSISDHldaIFVCTGGSSLIAGIAASVKQIMPHT--KVIGVEPENNNLLQRSL 209
                 66677999************8637*******************************************9977644....3444557654.68888888888887543111133333343337888888888888888777777654..45668998888887775 PP

>> TIGR00263  trpB: tryptophan synthase, beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.7   0.0   3.8e-05      0.01      51     252 ..       3     199 ..       1     207 [. 0.72

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 3.8e-05
   TIGR00263  51 tpltfaknlskklggakiylkredllhtGahkinnalgqallakrlGkkriiaetGaGqhGvatataaallglecevymGaedverqklnvfrmellgakvvpvtsGsktlkdavnealrdWvtsvedthyvlGsavGphPfPeivrefqsvigeevkeqileke....grlP...daviacvGGGsnaiGifaafie.deeveligvea 252
                 +p+ +++ ls++lg a +++kredll + +++i  a       +r G k +++    G  G + a+aa +lgl+  v +  e +   ++ +  ++ +gakv+      +tl +a +ea r    s  +        v ph  P+++   q+  g ev +qi ++     g +    da+  c GG s   Gi a+  +  ++ ++igve+
  MMETSP1137-20121227|3430_1   3 SPMQHCSGLSQRLG-ACVHIKREDLLPGFSYRIRGAYNLLDSLRRDGVKSVVTF-SIGSQGHSLAIAAQRLGLDPPVIVMPERT--PAVRIEAIKRVGAKVHV---YGQTLLEAQEEAERLAKESGGKLT-----FVAPHDDPRVIA-GQATAGLEVTRQIGAAVeaagGSISdhlDAIFVCTGGSSLIAGIAASVKQiMPHTKVIGVEP 199
                 789999*******8.99******************9988888899999998874.57788888999999****98776555443..35667778889998875...346888999988776555554443.....457888888765.58888888888885432122344441115677788887777777554333335577888876 PP

>> TIGR02035  D_Ser_am_lyase: D-serine ammonia-lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.2   0.0   4.5e-05     0.012     158     393 ..      55     288 ..      49     301 .. 0.80

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 4.5e-05
   TIGR02035 158 GstGnlGlsiGiisaalGfkvtv.hmsadakkwkkdklrskGvtvveyesdyskaveeGrkea.eadplsyfvddeksrdlflGyavaasrlkkqldkkgikvd...kehplfvylpcGvGGgpGGvafGlkllfgddvhvffaepthspcmllGlytGlhekisvqdiGidnltaadGlavgrpsGlvGrllerlldGiytvddeklydllallaesedkrlepsalaglaGvvrllkee 393
                  s G  G s+ i + +lG+   v  m   + + + + ++  G +v  y +   +a ee  + a e+     fv   +   +  G a a+  +  q+ ++        ++h   +++  G      G+a  +k+++  +  v+ +ep     +   l  G    +       +     dG a+ +    v rl ++l+d i tv+d+++   ++   e+    lep+   ++aG+++ l++ 
  MMETSP1137-20121227|3430_1  55 FSIGSQGHSLAIAAQRLGLDPPViVMPERTPAVRIEAIKRVGAKVHVYGQTLLEAQEEAERLAkESGGKLTFVAPHDDPRVIAGQATAGLEVTRQIGAAVEAAGgsiSDHLDAIFVCTGGSSLIAGIAASVKQIMP-HTKVIGVEPENNNLLQRSLLEGHR--VV----LPEPSHFVDGAAMQQLGPEVFRLCNELVDDIVTVSDDEICAAVRDCFEDTRAMLEPAGAISVAGLKKWLASR 288
                 57899999999999999998654167888889999999*****************9999887615567888999999999999*****99999998665433321114555566666666667899******9985.678999***999988777777743..22....23556779************************************9999999***********9999877664 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (620 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       149  (0.0363237); expected 82.0 (0.02)
Passed bias filter:                      133  (0.0324232); expected 82.0 (0.02)
Passed Vit filter:                        26  (0.00633837); expected 4.1 (0.001)
Passed Fwd filter:                        15  (0.00365675); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.68u 0.15s 00:00:00.83 Elapsed: 00:00:00.96
# Mc/sec: 852.43
//
Query:       MMETSP1137-20121227|3431_1  [L=132]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (132 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        50  (0.0121892); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.13s 00:00:00.29 Elapsed: 00:00:00.28
# Mc/sec: 622.23
//
Query:       MMETSP1137-20121227|3432_1  [L=262]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (262 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       225  (0.0548513); expected 82.0 (0.02)
Passed bias filter:                      106  (0.0258411); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.15s 00:00:00.38 Elapsed: 00:00:00.45
# Mc/sec: 768.47
//
Query:       MMETSP1137-20121227|3433_1  [L=481]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   1.3e-160  532.9   0.1     2e-147  489.4   1.1    2.0  2  TIGR01064 pyruv_kin: pyruvate kinase


Domain annotation for each model (and alignments):
>> TIGR01064  pyruv_kin: pyruvate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  489.4   1.1  4.9e-151    2e-147       1     342 [.      18     370 ..      18     375 .. 0.96
   2 !   40.9   0.0   4.7e-15   1.9e-11     372     460 ..     374     466 ..     368     480 .. 0.86

  Alignments for each domain:
  == domain 1    score: 489.4 bits;  conditional E-value: 4.9e-151
   TIGR01064   1 rrtkIvaTiGPateskevlkklldaGvnvvRlNfSHgsheehkkvienvrevaeklg...kpvaillDtkGpeiRvgeikk...eevklkkgekvilttdek.keegseekvsvdykslvkdvkeGdkilvdDGkislkVveveedk.vivevknggelkskkgvnlpgaevslpalsekDkkdlkfgveqgvdlvaaSFvrkaedvkevrevleekg...akdvkiiaKiEnqegvknideIikasdgimvARGDLGveipaeevpllQkklikkcreagkpvitATqmLdSmiknprPTRAEvsDvanAvldGtdavMLSgEtakGkYPveaVkvmakiakeaekalekkt 342
                 r t Iv+TiGP+te +e+l+ l   G+nv+R+NfSHgs+eeh  ++ n+r++ +      + vai+lDtkGpeiR+g++k+   ++  l+ g+ v++t d + k+e++ e +++dy +l+k++++ + i++dDG++slkVve+ +++ +++ev+n   l s+kg nlp ++v+lpalsekDkkdl fg+eq+vd+v+aSF+rka+dv+evr +l +++   +k+++ii+KiEn+eg++n+deI+  +dg+mvARGDLG+eipae+v+l+Qk++i+kc+ +gkpvi+ATqmL+Sm++nprPTRAEvsDvanAvldG+d+vMLSgEtakGkYP eaV++ma++++eae+al +++
  MMETSP1137-20121227|3433_1  18 RATGIVCTIGPKTEAQEKLTLLRTKGLNVMRMNFSHGSYEEHGARVTNLRKSVADNPldgRLVAIALDTKGPEIRTGTLKDpsaGDPMLTAGSMVTVTVDPAmKCECTAELIYMDYTNLPKVMQVDNLIYIDDGLLSLKVVEIPDAQtLKCEVMNTAXLGSHKGCNLPLVDVDLPALSEKDKKDLAFGIEQNVDMVFASFIRKASDVREVRACLVAADpviGKRIRIISKIENHEGMRNFDEILAETDGVMVARGDLGIEIPAEKVFLAQKMMIAKCNVVGKPVICATQMLESMTTNPRPTRAEVSDVANAVLDGADCVMLSGETAKGKYPAEAVSMMAEVCREAESALFQRQ 370
                 6799**********************************************988776556799******************9888899**************99****************************************99888******************************************************************988644479****************************************************************************************************************************987655 PP

  == domain 2    score: 40.9 bits;  conditional E-value: 4.7e-15
   TIGR01064 372 akakaivvltesgrtarllskyrpkapiiavtrnervarqlalsrGvfpvlvd....eeeeelekalkkalellkekgilkkgdlvvviqaga 460
                 a a++i++lt++g++arl+s+ rp++pi++++r++++   ++l+rG +p+l+     e   + e++ + a++++k++++++ g++vv+ q+ +
  MMETSP1137-20121227|3433_1 374 AAASLIITLTSKGTSARLISRWRPRCPILVLSRDPHTGAACNLHRGCIPYLYPhpkkEGGPDAEERFAYAMDIAKKSKLVQVGQTVVLAQGSQ 466
                 45899***********************************************97665555567999999***************999999854 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (481 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       128  (0.0312043); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.14s 00:00:00.50 Elapsed: 00:00:00.70
# Mc/sec: 906.95
//
Query:       MMETSP1137-20121227|3434_1  [L=542]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.1e-80  266.5   0.0    9.5e-80  266.1   0.0    1.1  1  TIGR01982 UbiB: 2-polyprenylphenol 6-hydroxylase
    2.5e-06   24.9   0.0    8.7e-06   23.2   0.0    1.8  2  TIGR03724 arch_bud32: Kae1-associated kinase Bud32


Domain annotation for each model (and alignments):
>> TIGR01982  UbiB: 2-polyprenylphenol 6-hydroxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  266.1   0.0   4.6e-83   9.5e-80      50     416 ..     134     510 ..      88     528 .. 0.90

  Alignments for each domain:
  == domain 1    score: 266.1 bits;  conditional E-value: 4.6e-83
   TIGR01982  50 erlrlaleelGPifiKlGQvlstRaDllpeeiaeeLslLqdkvppfdlkaarkvieaelgkpveelFaefeekPlAaASiaQvhkAvlvegkeVavKvlRPgiekkieadikllellaklvekllpeakrlrptevvkefektlkeEldlrlEaanaselkenfkndkkl....ivPevyweltservltlewidgipvsdleklkeaGldlkalaenlvesflkqvlrdgfFHaDlHpGNilvakdgkiialDfGivgrlseeerrylaeillgflerdykrvaevhleagyvpsdtdlaeleqairavg........epivgkplkeisigklLaklfkitekfelevqpeLlLLqKtlltvEGvgrqldpdldlwk 416
                   lr+  eelG +++KlGQ++++ + l+p+e+++e ++  d+ pp++ ++++  ie elg+p+e++++++e++PlA+ASiaQvh+A+l +g++V++Kv++ gi+  ++ad+ ll+++a++++         + ++vvk++++++ eE d+ lEa+++++++++++ +++l    + P+vy e  s +v+tle+++g+p++dle++++   +++      +++ ++ vl + +FHaD+H+GN+lv +dg+++++DfGivg++ +++ +++ + +++   +d + +a  + ++g++ +d+d+++++ ++r           + +    + e ++++l+ ++ ki+e+++++ + e++LL K +l+ +  +r l pdld+++
  MMETSP1137-20121227|3434_1 134 VILRRLCEELGATYVKLGQFIASSPTLFPPEYVAEFQKCLDATPPMPWSVVKPLIETELGRPIEQIYSSVETTPLASASIAQVHAARLRTGEDVVIKVQKRGIQGSLRADLDLLYSVARMLQLAG--LTTSDLSDVVKTLREAILEETDFVLEAKRTTQFRQFLQRSPDLagavTSPKVYPEASSAKVMTLERLYGVPLTDLEAVRSVTPNPELALILALNTWVTSVLVNEWFHADVHAGNLLVLRDGRVAFIDFGIVGSIPQSTATAMMDFVQSYALNDIDGIASAIQRMGFTAKDIDVRAFAVDLRDALasmqaidpNMVSAGAVDETQLNALVSSVAKISESYGIRFPREFALLVKQVLYFDRYTRLLAPDLDVLS 510
                 4578899******************************************************************************************************************9777..4455889********************************9975222268********************************8888766667789999********************************************************************************999965411111212234556799999*********************************************975 PP

>> TIGR03724  arch_bud32: Kae1-associated kinase Bud32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.2   0.0   4.2e-09   8.7e-06      34     138 ..     278     391 ..     266     412 .. 0.84
   2 ?   -1.9   0.0       0.2   4.1e+02     134     163 ..     423     452 ..     416     460 .. 0.82

  Alignments for each domain:
  == domain 1    score: 23.2 bits;  conditional E-value: 4.2e-09
   TIGR03724  34 elDeklrkeRtrkEarllseakka..gvntPvvydvdpeekkivmeyiegkklkdlleekel......ellkevGelvgklHkagivhgDlttsNiiv.kddklyliDfGLgkk 138
                 e D  l ++Rt +  ++l++  +    v++P vy    ++k +++e++ g +l dl   ++        l+ ++ ++v  +  ++  h D++  N++v +d+++ +iDfG+   
  MMETSP1137-20121227|3434_1 278 ETDFVLEAKRTTQFRQFLQRSPDLagAVTSPKVYPEASSAKVMTLERLYGVPLTDLEAVRSVtpnpelALILALNTWVTSVLVNEWFHADVHAGNLLVlRDGRVAFIDFGIVGS 391
                 5577899999999999999987652269*************************9987776556788889999***********************99879**********8544 PP

  == domain 2    score: -1.9 bits;  conditional E-value: 0.2
   TIGR03724 134 GLgkkskevedkavDlhvlkrslestheel 163
                 G   k+ +v+  avDl+    s++++ +++
  MMETSP1137-20121227|3434_1 423 GFTAKDIDVRAFAVDLRDALASMQAIDPNM 452
                 667778889999999999999999988775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (542 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        99  (0.0241346); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.13s 00:00:00.53 Elapsed: 00:00:00.57
# Mc/sec: 1233.42
//
Query:       MMETSP1137-20121227|3435_1  [L=255]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (255 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        74  (0.01804); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.12s 00:00:00.34 Elapsed: 00:00:00.34
# Mc/sec: 989.92
//
Query:       MMETSP1137-20121227|3437_1  [L=455]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.2e-09   34.4   0.0    1.5e-09   34.1   0.0    1.1  1  TIGR03903 TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
  ------ inclusion threshold ------
      0.012   12.9   0.0      0.024   11.9   0.0    1.4  1  TIGR03724 arch_bud32: Kae1-associated kinase Bud32


Domain annotation for each model (and alignments):
>> TIGR03903  TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.1   0.0   7.1e-13   1.5e-09       5     198 ..     262     453 ..     258     455 .] 0.79

  Alignments for each domain:
  == domain 1    score: 34.1 bits;  conditional E-value: 7.1e-13
   TIGR03903   5 kvaikllRedaa......eeerlvaRFrReialCarLshPnivaLlDsGeaedgllFavFeyveGrtl...revLaad..Ga...LpaaetgrLmlqvLDalaaahdaGvvhRDLkPqnimvsaadveshakvLDFGigaLlpgvedadeatltrttevlGsPaYaaPeqLRgepvtaksDlYaWGLivleCLtGkrvvqGasvaevl 198
                  v +k+lR+d+        e+rl aR        +     +iv+LlD    ++  l  v e+         r +La++  G     ++++   L  q L a    h++ ++h DLkP+n+ +     ++  k++D G + L  + ++           ++ s  Y aPe + g     k D++  G i+ e   G+++  G +v  vl
  MMETSP1137-20121227|3437_1 262 MVSVKVLRNDKDcidqglGEMRLLARLSS----GDPNGEQHIVRLLDYFYYKE-HLLIVSELLRDSLFnfyRYLLATEpdGLasyFTPETLCILSRQLLSACHFLHERSITHCDLKPENVCLVS-ASRRIFKIIDLGSAVLSHDYHN----------SYVQSRWYRAPEVMLGLKWGHKVDVWGVGCILAELCIGQPIFYGSTVEAVL 453
                 57888888885555444444444444433....33333459******999988.777899999875432238899986324312145667778899************************9865.568899******9999999998..........789999*****************************************9987 PP

>> TIGR03724  arch_bud32: Kae1-associated kinase Bud32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   1.2e-05     0.024     102     141 ..     357     399 ..     339     406 .. 0.77

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 1.2e-05
   TIGR03724 102 lvgklHkagivhgDlttsNiiv..kddkly.liDfGLgkkske 141
                 +   lH+  i+h Dl ++N+ +   +++++ +iD+G +  s++
  MMETSP1137-20121227|3437_1 357 ACHFLHERSITHCDLKPENVCLvsASRRIFkIIDLGSAVLSHD 399
                 55679***************98543445444899997776665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (455 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        72  (0.0175524); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.33u 0.15s 00:00:00.48 Elapsed: 00:00:00.45
# Mc/sec: 1334.56
//
Query:       MMETSP1137-20121227|3438_1  [L=291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (291 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       212  (0.0516821); expected 82.0 (0.02)
Passed bias filter:                       44  (0.0107265); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.13s 00:00:00.36 Elapsed: 00:00:00.36
# Mc/sec: 1066.91
//
Query:       MMETSP1137-20121227|3439_1  [L=465]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.9e-13   45.8   7.2    0.00055   15.9   0.0    5.1  4  TIGR00870 trp: transient-receptor-potential calcium channel protein


Domain annotation for each model (and alignments):
>> TIGR00870  trp: transient-receptor-potential calcium channel protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.0   0.0   8.4e-06     0.034     130     161 ..       5      36 ..       2     103 .. 0.79
   2 !   15.9   0.0   1.3e-07   0.00055     132     161 ..     106     135 ..      99     144 .. 0.91
   3 !    6.6   0.0   8.7e-05      0.36     130     159 ..     203     232 ..     151     247 .. 0.86
   4 !    9.7   0.5   9.9e-06      0.04     129     163 ..     301     347 ..     234     439 .. 0.69

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 8.4e-06
   TIGR00870 130 kgitalilAihkqnyeivklLlekgasveara 161
                 +g tal++A+   +  + +lLl++ga+++ + 
  MMETSP1137-20121227|3439_1   5 EGRTALHVAASDGDKHMCELLLDSGAQINCKD 36 
                 799*************************9653 PP

  == domain 2    score: 15.9 bits;  conditional E-value: 1.3e-07
   TIGR00870 132 italilAihkqnyeivklLlekgasveara 161
                  tal+ A+ + n+ iv++Lle ga+v++r 
  MMETSP1137-20121227|3439_1 106 RTALHCAAREGNLPIVQMLLEHGAEVNLRS 135
                 5**************************886 PP

  == domain 3    score: 6.6 bits;  conditional E-value: 8.7e-05
   TIGR00870 130 kgitalilAihkqnyeivklLlekgasvea 159
                    t+l+lA  + n  + ++Ll+ ga+v+ 
  MMETSP1137-20121227|3439_1 203 DKRTPLHLACCEGNKVLAQALLDAGANVNF 232
                 458*************************94 PP

  == domain 4    score: 9.7 bits;  conditional E-value: 9.9e-06
   TIGR00870 129 tkgitalilAihkqnyeivklLlekgasve............arakg 163
                   g tal++ + + ++ iv++L++ ga+v+            a+a g
  MMETSP1137-20121227|3439_1 301 CDGRTALHVXASEGSIHIVRVLIAAGANVNckdrwgttplrdAAASG 347
                 56899999999999999999999999999966666666666644444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (465 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        69  (0.0168211); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.14s 00:00:00.52 Elapsed: 00:00:00.43
# Mc/sec: 1427.32
//
Query:       MMETSP1137-20121227|3440_1  [L=436]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.3e-10   37.9   0.0    3.8e-10   37.2   0.0    1.3  1  TIGR01140 L_thr_O3P_dcar: threonine-phosphate decarboxylase
    8.2e-10   35.9   0.0    1.1e-09   35.5   0.0    1.1  1  TIGR01141 hisC: histidinol-phosphate transaminase
      3e-07   27.5   0.0    4.2e-07   27.0   0.0    1.1  1  TIGR03947 viomycin_VioD: capreomycidine synthase
    3.1e-05   20.9   0.0    3.6e-05   20.7   0.0    1.1  1  TIGR01265 tyr_nico_aTase: tyrosine/nicotianamine aminotransferases
    5.6e-05   20.0   0.0    6.3e-05   19.9   0.0    1.1  1  TIGR03542 DAPAT_plant: LL-diaminopimelate aminotransferase


Domain annotation for each model (and alignments):
>> TIGR01140  L_thr_O3P_dcar: threonine-phosphate decarboxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.2   0.0   4.6e-13   3.8e-10      66     206 ..     128     289 ..     116     306 .. 0.79

  Alignments for each domain:
  == domain 1    score: 37.2 bits;  conditional E-value: 4.6e-13
   TIGR01140  66 esvlavnGaqeaiql.lprllapkrv.lvlaptyseyaralraagaevvels.........dleelaael....eeadllvvvnPnNPtGrllekeellalaerlkarggllvvDEAFidftpaeslaalaea......lpglvVlrSltKffglaGlRlGf 206
                  + l + Ga  +      + l++++v  v  pt+ ++   +++ag+ev+++          dl+ + a++    e    ++ +  +NPtG   ++e+ ++  e++kar + ++vD A+  f   +  a++a+        +++++ +S+ K fgl G R+G 
  MMETSP1137-20121227|3440_1 128 VQTLSGTGACRIAADfYSKFLPKGTVaYVSDPTWPNHIPIFQQAGFEVRKYRyldrktnrlDLDGMLADIadapEGSIFVMHACAHNPTGVDPTPEQWKKXSEAMKARDAKVLVDMAYQGFASGDAQADNAAXrxxvadGHSIMLAQSFAKNFGLYGERVGT 289
                 5556666665554442556677888868899*********************9*****999666655555552255555555668**********************************999988555554444777767889999**************96 PP

>> TIGR01141  hisC: histidinol-phosphate transaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.5   0.0   1.3e-12   1.1e-09      71     222 ..     126     290 ..     105     355 .. 0.86

  Alignments for each domain:
  == domain 1    score: 35.5 bits;  conditional E-value: 1.3e-12
   TIGR01141  71 eeenillgnGsdelielliraflepgdavlvleptysmYevsakiagaevkevplked..gqedleavleaakekvk.lvfl..asPnnPtGnllkreeiekvleev.e.dalVVvDeAYieFsee......asvlellaeypnlvvlrTlSKafgLAglRvGya 222
                  + + l g G+  +   +   fl +g+ ++v++pt+  +  + ++ag ev+++++ +   ++ dl+ +l+++++ ++  +f+  a  +nPtG   + e+ +k  e++ + da V+vD AY  F++       a     +a+   ++  +++ K fgL g RvG +
  MMETSP1137-20121227|3440_1 126 AAVQTLSGTGACRIAADFYSKFLPKGTVAYVSDPTWPNHIPIFQQAGFEVRKYRYLDRktNRLDLDGMLADIADAPEgSIFVmhACAHNPTGVDPTPEQWKKXSEAMkArDAKVLVDMAYQGFASGdaqadnAAXRXXVADGHSIMLAQSFAKNFGLYGERVGTL 290
                 5567777888888888889999999****************************99877788899999999666655435565224579*****************99768**************98788766666678889999*******************75 PP

>> TIGR03947  viomycin_VioD: capreomycidine synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.0   0.0   5.1e-10   4.2e-07      95     249 ..     153     315 ..     128     337 .. 0.79

  Alignments for each domain:
  == domain 1    score: 27.0 bits;  conditional E-value: 5.1e-10
   TIGR03947  95 evvvvdpayhslselavalgakvrrwplaaerdfrpdlddlralvtdrtr...lvvvnfPhnPtGasvderelsellelaaesgavllWdaafadlvy...da.eplpepsaaadrvisf.gtlskafGlpGlrvGWcvaPkdllaelvrlrdyltlslsPlv 249
                    v dp++ +   + + +g +vr+++ +  +  r dld + a ++d ++    v+    hnPtG+  ++++ ++  e +++ +a +l d a++ ++    +a ++     +a +++i     ++k fGl G rvG   +  +  ae +r+  +l l + P+ 
  MMETSP1137-20121227|3440_1 153 VAYVSDPTWPNHIPIFQQAGFEVRKYRYLDRKTNRLDLDGMLADIADAPEgsiFVMHACAHNPTGVDPTPEQWKKXSEAMKARDAKVLVDMAYQGFASgdaQAdNAAXRXXVADGHSIMLaQSFAKNFGLYGERVGTLSIVCEDEAEAARVSSQLKLIIRPMY 315
                 556888999888899999*********************988887776653224555679********************************9988752112213334445566677765279*************876666667899999999999998875 PP

>> TIGR01265  tyr_nico_aTase: tyrosine/nicotianamine aminotransferases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.7   0.0   4.4e-08   3.6e-05     118     272 ..     149     309 ..      45     385 .. 0.73

  Alignments for each domain:
  == domain 1    score: 20.7 bits;  conditional E-value: 4.4e-08
   TIGR01265 118 naganiLvPrPgfplYetlakalglevrkydllpekdweidldel.ealaDektvalvvinPs..nPcGsvfsrdHlekvvevaeklklliiaDEvYdklvfgdatfvplak...laskvPvlslggiskrwlvPGWrlGWlivvdpkgiledtvlqglkk 272
                  +g    v  P++p+   + ++ g evrky  l  k  ++dld++ + +aD     + v+  +  nP+G   + +  +k  e  +     ++ D  Y+ ++ gda+    a    +a+   ++  ++ +k++   G r+G l +v + +     v++ lk 
  MMETSP1137-20121227|3440_1 149 PKGTVAYVSDPTWPNHIPIFQQAGFEVRKYRYLDRKTNRLDLDGMlADIADAPEGSIFVMHACahNPTGVDPTPEQWKKXSEAMKARDAKVLVDMAYQGFASGDAQADNAAXrxxVADGHSIMLAQSFAKNFGLYGERVGTLSIVCEDEAEAARVSSQLKL 309
                 4677778999*********************************8637799998888888765444***************************************8776665411156667889999**************876655544444445555544 PP

>> TIGR03542  DAPAT_plant: LL-diaminopimelate aminotransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.0   7.6e-08   6.3e-05     111     263 ..     143     296 ..      48     364 .. 0.75

  Alignments for each domain:
  == domain 1    score: 19.9 bits;  conditional E-value: 7.6e-08
   TIGR03542 111 llelfgsdktva.vqdPvyPvyvdsavlaGragvldddgkykkivylp.ctkenefiPelpeekkvdiiyl.CsPnnPtGtvltkeqlkelvdyakendslilfdaayeafisdp.slPksiyeiegakecaiei.rsfsktlGftGvrlg.ytvvPke 263
                 + + f ++ tva v+dP++P ++ + + aG      + +ky+ +   +  ++ ++++ ++++ ++  i+++     nPtG   t eq k+  +  k++d+ +l d ay+ f s + +  ++      a   +i + +sf+k+ G+ G r+g +++v ++
  MMETSP1137-20121227|3440_1 143 FYSKFLPKGTVAyVSDPTWPNHIPIFQQAGF-----EVRKYRYLDRKTnRLDLDGMLADIADAPEGSIFVMhACAHNPTGVDPTPEQWKKXSEAMKARDAKVLVDMAYQGFASGDaQADNAAXRXXVADGHSIMLaQSFAKNFGLYGERVGtLSIVCED 296
                 5555555556654899999999988888887.....55666666544304455677788887776666554233579**********************************99661555666666667666665538************9834566554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (436 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        95  (0.0231594); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.36u 0.14s 00:00:00.50 Elapsed: 00:00:00.41
# Mc/sec: 1403.59
//
Query:       MMETSP1137-20121227|3441_1  [L=327]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (327 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       103  (0.0251097); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.15s 00:00:00.41 Elapsed: 00:00:00.59
# Mc/sec: 731.53
//
Query:       MMETSP1137-20121227|3442_1  [L=542]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (542 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       112  (0.0273038); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.17s 00:00:00.55 Elapsed: 00:00:00.30
# Mc/sec: 2384.60
//
Query:       MMETSP1137-20121227|3443_1  [L=347]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (347 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        75  (0.0182838); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.09s 00:00:00.35 Elapsed: 00:00:00.54
# Mc/sec: 848.15
//
Query:       MMETSP1137-20121227|3444_1  [L=177]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (177 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        74  (0.01804); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.16s 00:00:00.35 Elapsed: 00:00:00.39
# Mc/sec: 599.03
//
Query:       MMETSP1137-20121227|3445_1  [L=485]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.3e-07   28.1   1.4    0.00014   18.1   0.1    2.1  2  TIGR03817 DECH_helic: helicase/secretion neighborhood putative DEAH-box helicase
    1.8e-07   27.1   0.1      0.002   13.7   0.0    2.0  2  TIGR04121 DEXH_lig_assoc: DEXH box helicase, DNA ligase-associated
     0.0055   13.3   0.0      0.036   10.6   0.0    1.9  2  TIGR00643 recG: ATP-dependent DNA helicase RecG
  ------ inclusion threshold ------
      0.013   12.1   0.0      0.031   10.8   0.0    1.7  1  TIGR00614 recQ_fam: ATP-dependent DNA helicase, RecQ family
      0.052    9.8   0.0      0.077    9.2   0.0    1.3  1  TIGR01389 recQ: ATP-dependent DNA helicase RecQ


Domain annotation for each model (and alignments):
>> TIGR03817  DECH_helic: helicase/secretion neighborhood putative DEAH-box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.1   1.7e-07   0.00014      23     121 ..      76     184 ..      63     195 .. 0.84
   2 !    9.1   0.0   8.6e-05     0.071     273     373 ..     338     448 ..     287     459 .. 0.71

  Alignments for each domain:
  == domain 1    score: 18.1 bits;  conditional E-value: 1.7e-07
   TIGR03817  23 pdvvaaleaaGieapwqhqaraaelahaGehvvvatgtasGkslayllPvlsalaed......p....ratalylaPtkalaadqlravkeleerdvraatydGdtpae 121
                 +++ a l+ +G ++p +  a a    ++Ge+vv+a +  +Gk++a+l P+l++la+       +      +a+ l P   ++   l a ++l + ++ra++  G+ + +
  MMETSP1137-20121227|3445_1  76 KKLAASLAIQGYKQPSKPAAVAFAPIMKGESVVLACASGAGKTIAWLAPLLQRLASIeedtdeKaaqgSVRAIVLVPNNDVGLQILDAARDLARGKIRASIATGEHKWA 184
                 567788889999999999999999999*************************9987744455515555778999********************999999998887655 PP

  == domain 2    score: 9.1 bits;  conditional E-value: 8.6e-05
   TIGR03817 273 rtltfvrsrrgaevvaleakerlaevdaelaervaayraGylaedrreleral.....kdGellg.....vaatnalelGvdisGldavviaGfPGtvaslwqqaGraGrr 373
                 +tl+ v++  + e v ++ ke+    + +   rv a+ +   +e+r++  +a+     kd +l++     ++at+ l  G+d+ G d v++  fP   a + +++G a r 
  MMETSP1137-20121227|3445_1 338 QTLVVVNTMETCERVEVALKELSILGGGRRRPRVLAFHGRMAPEKRQAALHAFarpvkKDPTLRApppriLVATDRLSRGIDLPGTDHVILFDFPRDGAEYLRRVGLASRG 448
                 577777777777777776666555555666777777777777777765444331111134455443333389**********************************99986 PP

>> TIGR04121  DEXH_lig_assoc: DEXH box helicase, DNA ligase-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   0.0   2.4e-06     0.002      23     151 ..      99     230 ..      77     279 .. 0.81
   2 !   11.7   0.0     1e-05    0.0083     247     344 ..     335     446 ..     293     464 .. 0.79

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 2.4e-06
   TIGR04121  23 eaaeegesglliapTGaGKTlavflpsliela......akekpkkglkvlyitPLkaLakdieraleapieelg.leirvelrtGDtssserarqrkkppdiLltTpEslaLllsskdaeklfkdlravvvDElHe 151
                 + + +ges +l  + GaGKT a   p l +la       +++ + +++++ + P     +d+   +  ++++l+  +ir ++ tG+ + ++++++  +  ++L+ T   l   l  +  +  +++  avv +++  
  MMETSP1137-20121227|3445_1  99 APIMKGESVVLACASGAGKTIAWLAPLLQRLAsieedtDEKAAQGSVRAIVLVPN----NDVGLQILDAARDLArGKIRASIATGEHKWASQKQRMGNGLELLVATLGRLRAHLEAPTPSFSLAGTVAVVCEDFET 230
                 56789*****************999999998898876544555578999999995....566655555555654158999999**999999999999999999999988888777777777777777777666555 PP

  == domain 2    score: 11.7 bits;  conditional E-value: 1e-05
   TIGR04121 247 karttlvFtNtRsqaEllfqaLlean....eelaleialhHgsldkeqRekveaalk.....agkl.....ravvcTssLdLGvDfgdvdlviqvGspkgvaRllQRiGRsn 344
                  ar+tlv +Nt   +E++  aL e+        + ++  +Hg ++ e+R+   +a++     + +l     r++v+T  L  G+D    d vi    p+  a  l R+G ++
  MMETSP1137-20121227|3445_1 335 PARQTLVVVNTMETCERVEVALKELSilggGRRRPRVLAFHGRMAPEKRQAALHAFArpvkkDPTLrapppRILVATDRLSRGIDLPGTDHVILFDFPRDGAEYLRRVGLAS 446
                 5789*******999998877776654222223345566689********988776541111123452222267************************************775 PP

>> TIGR00643  recG: ATP-dependent DNA helicase RecG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.0     0.067        55     456     504 ..     223     273 ..     218     279 .. 0.82
   2 !   10.6   0.0   4.4e-05     0.036     446     539 ..     334     435 ..     312     457 .. 0.77

  Alignments for each domain:
  == domain 1    score: 0.1 bits;  conditional E-value: 0.067
   TIGR00643 456 plieesekl.elkaaealleelkkaf.pklnvallhgrlksdekeevleeF 504
                  + e+ e+l e ++  + +e+l++ + ++ ++ l+++ l++  k++vl+e 
  MMETSP1137-20121227|3445_1 223 VVCEDFETLyEDRELLESYERLRAGLpSNCSITLVTSTLSDSIKQRVLNEI 273
                 566777777767888899999**9998899*****************9986 PP

  == domain 2    score: 10.6 bits;  conditional E-value: 4.4e-05
   TIGR00643 446 kkgrqvyvvyplieeseklelkaaealleelkkafpklnvallhgrlksdekeevleeF..........rekevdiLvaTtviEvGvdvPnatvmviedaeRfG 539
                 +  rq  vv+  +e  e++e   a ++l+ l     + +v  +hgr+ +++++++l++F          r+    iLvaT  +  G+d+P    +++ d  R G
  MMETSP1137-20121227|3445_1 334 QPARQTLVVVNTMETCERVE--VALKELSILGGGRRRPRVLAFHGRMAPEKRQAALHAFarpvkkdptlRAPPPRILVATDRLSRGIDLPGTDHVILFDFPRDG 435
                 4569999**********999..68899999999999999********************4333222111222347***************99988888776665 PP

>> TIGR00614  recQ_fam: ATP-dependent DNA helicase, RecQ family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   3.8e-05     0.031     225     325 ..     335     453 ..     235     482 .. 0.71

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 3.8e-05
   TIGR00614 225 kgksGiiYClsrkkveqvaaeLqkkgl........aaaaYhagleesarkevqkkflr....dei......qvvvatvafGmGinkpdvRfvihyslpksiesYYqesGRaGRDglkse 325
                 + +  ++  ++ +++e+v   L+++++          +a+h  +  ++r+   + f r    d        +++vat     Gi+ p   +vi ++ p++  +Y   +G a R +l  +
  MMETSP1137-20121227|3445_1 335 PARQTLVVVNTMETCERVEVALKELSIlgggrrrpRVLAFHGRMAPEKRQAALHAFARpvkkDPTlrapppRILVATDRLSRGIDLPGTDHVILFDFPRDGAEYLRRVGLASRGDLDGK 453
                 4444577777788888888888877773333333235799999999999999999875222232233333379****************************************887654 PP

>> TIGR01389  recQ: ATP-dependent DNA helicase RecQ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   0.0   9.4e-05     0.077     252     320 ..     372     453 ..     323     481 .. 0.74

  Alignments for each domain:
  == domain 1    score: 9.2 bits;  conditional E-value: 9.4e-05
   TIGR01389 252 laYhaGlskkvRaeaqekFleddv..........kvvvatvaFGmGidksdvRfvihldlPknlesyyqeaGRaGR...DGl 320
                 la+h+ +  ++R+ a+++F +  +          +++vat     Gid +   +vi +d P++  +y   +G a R   DG+
  MMETSP1137-20121227|3445_1 372 LAFHGRMAPEKRQAALHAFARPVKkdptlrapppRILVATDRLSRGIDLPGTDHVILFDFPRDGAEYLRRVGLASRgdlDGK 453
                 566666666666666666654221111122222279************************************9999544554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (485 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       134  (0.032667); expected 82.0 (0.02)
Passed bias filter:                      120  (0.029254); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.46u 0.16s 00:00:00.62 Elapsed: 00:00:01.71
# Mc/sec: 374.36
//
Query:       MMETSP1137-20121227|3446_1  [L=858]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.7e-90  299.2   0.1    8.7e-90  298.6   0.1    1.2  1  TIGR00222 panB: 3-methyl-2-oxobutanoate hydroxymethyltransferase
    5.7e-85  282.5   0.0    1.1e-84  281.5   0.0    1.5  2  TIGR00018 panC: pantoate--beta-alanine ligase
    0.00015   19.8   0.0    0.00071   17.6   0.0    2.1  2  TIGR00125 cyt_tran_rel: cytidyltransferase-related domain
      0.007   13.4   0.4      0.017   12.2   0.2    1.7  1  TIGR02317 prpB: methylisocitrate lyase


Domain annotation for each model (and alignments):
>> TIGR00222  panB: 3-methyl-2-oxobutanoate hydroxymethyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  298.6   0.1   8.5e-93   8.7e-90      10     263 ..     122     375 ..     113     376 .. 0.97

  Alignments for each domain:
  == domain 1    score: 298.6 bits;  conditional E-value: 8.5e-93
   TIGR00222  10 qakkqeekivaltaydaaiaklledagvdvilvGdslgmvvlgldstlsvsvedmiyhtkavkrGaknalivtdlPflsykeeeqalknaarvlketgadavkleGGeelvetvkalteegvpvvghlGltPqsvrllGgykvqGkdeeaakklledalaleeaGvlllvlecvpaelaakiteklkiPviGiGaGkkadGqvlvladllGltverkPkfvkeylklketieeavkkyvdevrkrafPeekesf 263
                  ++++ e++ +ltayd++ a+l+++ag d++lvGdslgmvvlg+++t  v+v++m++h +a  rG+ +a++v dlPf sy +++ a +n +r++ke+  davkleGG ++ve+v+al + gv v+gh+GltPqs  +lGgy+vqG+  e+a  ll +a ale+aG +++vle+vp ++aa +te+l++P+iGiGaG+ + Gqv v++d+lGl +++ Pkf+ +  +l+  + +a+k+y   v  r+fP+++++f
  MMETSP1137-20121227|3446_1 122 AKYERGEPLCMLTAYDYMSARLADKAGADMLLVGDSLGMVVLGQEDTTEVTVDQMVHHSAAAARGVSRAFLVGDLPFGSYLTPAAAAHNGVRLVKEGRVDAVKLEGGLRVVEQVRALVDAGVAVMGHIGLTPQSYAQLGGYRVQGRTAEQAYSLLAEARALEKAGCFAIVLEMVPGPVAAMLTERLSVPTIGIGAGVATSGQVQVWHDVLGLYDKKAPKFAMRRANLEPMLLAALKEYCVAVGARTFPSDTHTF 375
                 35677899***************************************************************************************************************************************************************************************************************************************************998 PP

>> TIGR00018  panC: pantoate--beta-alanine ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.1   0.0       1.2   1.3e+03      80     114 ..     142     176 ..     141     183 .. 0.83
   2 !  281.5   0.0   1.1e-87   1.1e-84       2     282 ..     494     785 ..     493     786 .. 0.91

  Alignments for each domain:
  == domain 1    score: -4.1 bits;  conditional E-value: 1.2
   TIGR00018  80 klleklkvdvlfaPkvkelypegaeqkttvvvpka 114
                 +l++k++ d+l + +   + + g+e+ t+v+v ++
  MMETSP1137-20121227|3446_1 142 RLADKAGADMLLVGDSLGMVVLGQEDTTEVTVDQM 176
                 57899999999999999999999999999988774 PP

  == domain 2    score: 281.5 bits;  conditional E-value: 1.1e-87
   TIGR00018   2 kvletieelreyikqleregktvglvPtmGaLheGhasLidravkendlvvvsifvnPlqfgpneDlekYPrdleeDlklleklkvdvlfaPkvkelypegaeqkttvvvp....kalsevLeGasrpghfrGvativtklfnlvkpdvayfGkkDaqqlavieklvkdllldielvsveivreedgLalssrnkYLtaeerkqaeklyraLkaaeeairaGerdvdavikiakdildtk.slkvdyveladadtLeelsevekks.......vviavaayvgdarLiDnlvv 282
                 +v++ti+e r  + +l     +vglvPtmGaLh+Gh sL+  a+++n +vv sifvnP+qfgpneD+ +YPr+ +eDl++l+ ++vd +faP+  e+yp++  + +   +p     ++ +  e + rp+hfrGvat+v+kl n+vkp   yfG+kDa q +v+++lv+dl++d+++v  e+vre dgLa+ssrn YL++ er++a+++  aL++ + a ++Ge d  ++  +a++++ t+  l ++yv++a+ ++  el  +   +       +v ++a+ +g +rLiDn+++
  MMETSP1137-20121227|3446_1 494 RVVRTISEWRALRASLF-AHASVGLVPTMGALHAGHLSLAALAKRDNGVVVASIFVNPTQFGPNEDFGRYPRTWQEDLEKLQAAGVDYVFAPETSEMYPRASSSSAASLSPyidfDGIDSLAEARARPNHFRGVATVVAKLLNIVKPSSVYFGQKDAMQCVVVRRLVDDLNFDTKVVVGETVRESDGLAMSSRNAYLSPAERQIASTVHAALRSLAAAADSGEMDAAKLRDAAAEVVRTQpALALEYVSVASDENGAELETLPAAKpgvsrrgAVASIAVKLGATRLIDNILL 785
                 68899999998888877.778*******************************************************************************996665555541211457788899*******************************************************************************************************************9899*******99887666665544444456677*****************987 PP

>> TIGR00125  cyt_tran_rel: cytidyltransferase-related domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0      0.78     8e+02      16      33 ..     229     246 ..     227     249 .. 0.81
   2 !   17.6   0.0   6.9e-07   0.00071       5      52 ..     518     570 ..     515     581 .. 0.83

  Alignments for each domain:
  == domain 1    score: -1.8 bits;  conditional E-value: 0.78
   TIGR00125  16 lklleeakelfdelivgv 33 
                 l+++e+++ l+d  + ++
  MMETSP1137-20121227|3446_1 229 LRVVEQVRALVDAGVAVM 246
                 6799********866666 PP

  == domain 2    score: 17.6 bits;  conditional E-value: 6.9e-07
   TIGR00125   5 vGtFdplHlGHlklleeakelfdelivgvgsde..fvnpekg...pvtsaeer 52 
                 v+t+  lH GHl+l+  ak+ +  ++ ++++++  f ++e++   p t++e+ 
  MMETSP1137-20121227|3446_1 518 VPTMGALHAGHLSLAALAKRDNGVVVASIFVNPtqFGPNEDFgryPRTWQEDL 570
                 79*************999999999*****999999999999887777776665 PP

>> TIGR02317  prpB: methylisocitrate lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.2   0.2   1.6e-05     0.017       4     108 ..     119     226 ..     116     246 .. 0.86

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 1.6e-05
   TIGR02317   4 alrellkkedilqipGainalvallaekaGfeavYlsGaalaaslglPDlglttleevaeearritrvtklpllvDaDtGfGealn....vartvkeleeagvaavhie 108
                 +lr+  +++++l +  a++ ++a la+kaG + + +  +     lg  D + +t+++++++    +r ++   lv  D  fG+ l+    +   v+ ++e +v av++e
  MMETSP1137-20121227|3446_1 119 KLRAKYERGEPLCMLTAYDYMSARLADKAGADMLLVGDSLGMVVLGQEDTTEVTVDQMVHHSAAAARGVSRAFLV-GDLPFGSYLTpaaaAHNGVRLVKEGRVDAVKLE 226
                 7899999************************9887766666669***********************99999999.699999965422215567899999999999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (858 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       140  (0.0341297); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.54u 0.17s 00:00:00.71 Elapsed: 00:00:00.53
# Mc/sec: 2136.73
//
Query:       MMETSP1137-20121227|3447_1  [L=1199]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1199 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       108  (0.0263286); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.70u 0.18s 00:00:00.87 Elapsed: 00:00:00.56
# Mc/sec: 2776.40
//
Query:       MMETSP1137-20121227|3448_1  [L=126]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (126 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       103  (0.0251097); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.16s 00:00:00.33 Elapsed: 00:00:00.28
# Mc/sec: 593.95
//
Query:       MMETSP1137-20121227|3449_1  [L=266]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (266 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       123  (0.0299854); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.16s 00:00:00.40 Elapsed: 00:00:00.28
# Mc/sec: 1210.66
//
Query:       MMETSP1137-20121227|3451_1  [L=62]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (62 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        62  (0.0151146); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:00.25
# Mc/sec: 327.33
//
Query:       MMETSP1137-20121227|3452_1  [L=346]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (346 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        67  (0.0163335); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.18s 00:00:00.44 Elapsed: 00:00:00.61
# Mc/sec: 748.66
//
Query:       MMETSP1137-20121227|3453_1  [L=746]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0089   12.7   0.0      0.018   11.7   0.0    1.4  1  TIGR02928 TIGR02928: orc1/cdc6 family replication initiation protein


Domain annotation for each model (and alignments):
>> TIGR02928  TIGR02928: orc1/cdc6 family replication initiation protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.7   0.0   4.4e-06     0.018      31      85 ..     369     422 ..     357     438 .. 0.69

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 4.4e-06
   TIGR02928  31 lkpilrgsrpsnvliyGktGtGKtavt..kkvlkeleeaaeekdvrvstvyvnCqel 85 
                  ++ l+  r+  vl yG+tG+GKt ++  + + +e+ee a +   +v+   v+++  
  MMETSP1137-20121227|3453_1 369 VHEFLN-GRSGTVLAYGQTGSGKTHTMwgEMLPDEMEETAPRD--KVRAGDVRTEAV 422
                 444444.46789***********98863366777888887764..444444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (746 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       121  (0.0294978); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.18s 00:00:00.64 Elapsed: 00:00:00.46
# Mc/sec: 2140.52
//
Query:       MMETSP1137-20121227|3454_1  [L=391]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (391 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        89  (0.0216967); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.18s 00:00:00.46 Elapsed: 00:00:00.37
# Mc/sec: 1394.80
//
Query:       MMETSP1137-20121227|3455_1  [L=166]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (166 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       124  (0.0302292); expected 82.0 (0.02)
Passed bias filter:                      113  (0.0275475); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.16s 00:00:00.34 Elapsed: 00:00:00.34
# Mc/sec: 644.42
//
Query:       MMETSP1137-20121227|3456_1  [L=347]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.7e-97  322.9   9.4    7.4e-60  200.7   4.3    2.0  2  TIGR01930 AcCoA-C-Actrans: acetyl-CoA C-acetyltransferase
    5.1e-62  208.0  10.8    1.1e-41  141.0   4.1    2.0  2  TIGR02430 pcaF: 3-oxoadipyl-CoA thiolase
      3e-54  182.3  11.4    4.9e-43  145.4   2.4    2.2  2  TIGR02445 fadA: acetyl-CoA C-acyltransferase FadA
    3.7e-33  113.0  17.7      1e-24   85.2   7.8    3.9  3  TIGR02446 FadI: acetyl-CoA C-acyltransferase FadI
    1.3e-11   41.6   9.5    6.8e-08   29.4   0.8    2.5  2  TIGR03150 fabF: beta-ketoacyl-acyl-carrier-protein synthase II


Domain annotation for each model (and alignments):
>> TIGR01930  AcCoA-C-Actrans: acetyl-CoA C-acetyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  123.7   0.0   2.2e-39   1.8e-36      31     169 ..      19     158 ..       9     165 .. 0.97
   2 !  200.7   4.3     9e-63   7.4e-60     202     385 .]     165     344 ..     159     344 .. 0.95

  Alignments for each domain:
  == domain 1    score: 123.7 bits;  conditional E-value: 2.2e-39
   TIGR01930  31 elleragldpekidevilGnvlqageqaniaReaalaaglpesvpaltvnrvCaSglqAvalaaqkikaGeadvvvaGGvEsmSrvpillkaslrreslklgkakledqllkdl...vktklsmgetAenlakkygisReeq 169
                  +l r+gl+++ + +v +Gnvl+ag ++++aR+aal a+lp+s   +t+n+vC+Sg++Av l+aq+i+ G+adv+vaGG+EsmS++p++l+++  r+++++g+ ++ d ++ d+   v+++ +mg  Ae +a++ gi R eq
  MMETSP1137-20121227|3456_1  19 XALTRSGLSADLVQQVWMGNVLSAGLGQAPARQAALLAKLPDSACCTTINKVCSSGIKAVVLGAQQIMLGQADVIVAGGMESMSNAPYYLPKA--RWGHRMGHGQVVDGMITDGlwdVYDDCHMGSFAELCAETLGIDRAEQ 158
                 5799***************************************************************************************98..9*********************99********************998 PP

  == domain 2    score: 200.7 bits;  conditional E-value: 9e-63
   TIGR01930 202 kkvvskDegirpnttlekLakLkpafkekkgstvtAgNssqlnDGAaalllmseevakelgltplarivsaavagvdpeemglgpvpAiekaLkkaglsisdidlvEinEAFAaqvlavekelgsldlekvNvnGGAiAlGHPlGasGarivltllkeLkergkkyGlatlCvggGqGaAvile 385
                 +++v+ De+++  t+  + a+ +pafk+  g tvtA+N+s l+DGAaal+lms+++a+++g t+la+i ++a a   p+ ++++p+ Ai+ka++  gl+++++d++EinEAF+++++a+ k lg l  ++vNv+GGA+AlGHP+G+sGariv+tll+ Lk+r++++G+a +C+ggG ++A+++e
  MMETSP1137-20121227|3456_1 165 SRTVDADEEPQ--TQKSSAAEARPAFKKVGG-TVTAANASTLSDGAAALVLMSRDAADAHGATVLATIKGYADAEQAPSLFTTAPALAIPKAVENSGLQMDQVDFFEINEAFSVVAVANSKLLG-LPAAQVNVHGGAVALGHPIGCSGARIVVTLLSVLKQRKGRFGVAGICNGGGGASALVVE 344
                 56778888765..7788889*******9988.7*******************************************************************************************.889*****************************************************997 PP

>> TIGR02430  pcaF: 3-oxoadipyl-CoA thiolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.2   0.1   4.3e-23   3.5e-20      33     180 ..      15     158 ..      11     161 .. 0.86
   2 !  141.0   4.1   1.3e-44   1.1e-41     211     400 .]     161     346 ..     158     346 .. 0.94

  Alignments for each domain:
  == domain 1    score: 70.2 bits;  conditional E-value: 4.3e-23
   TIGR02430  33 lkalla.rnpsldaaaiddvilGcanqaGednrnvarmaallaGlpvsvpgttvnrlcgsgldalglaaraikaGeadlviaGGvesmsrapfvlGkadsafsrsakledttiGwrfvnpklkalyGvdsmpetaenvaeefgvsredq 180
                 l+ l a  ++ l a+ +++v +G    aG   +  ar aalla lp+s  +tt+n++c+sg++a+ l+a+ i  G+ad+++aGG+esms ap+ l ka        ++    +   ++   l ++y    m+  ae  ae++g++r++q
  MMETSP1137-20121227|3456_1  15 LQSLXAlTRSGLSADLVQQVWMGNVLSAGLG-QAPARQAALLAKLPDSACCTTINKVCSSGIKAVVLGAQQIMLGQADVIVAGGMESMSNAPYYLPKARWGH----RMGHGQVVDGMITDGLWDVYDDCHMGSFAELCAETLGIDRAEQ 158
                 5555541345688889999999999999986.5679*************************************************************97543....455555555678899999999999**************99998 PP

  == domain 2    score: 141.0 bits;  conditional E-value: 1.3e-44
   TIGR02430 211 qkkGeetvvdkdehlraettlealaklkavvre.dgtvtaGnasGvndGaaalllaseeavkrhgltprarilaaasaGveprvmGlgpvpavkkllaraglsledldvielneafaaqalavlrelgladddarvnpnGGaialGhplGasGarlvltalkqleksggryalatlciGvGqGialvierv 400
                 ++kG + +vd+de+++  t   + a+ ++ +++ +gtvta nas + dGaaal+l s +a+ +hg t  a i ++a a  +p ++  +p+ a+ k++++ gl+++++d  e+neaf+  a+a  + lgl+  +a+vn  GGa+alGhp+G sGar+v+t+l+ l++++gr+++a +c G G   alv+e v
  MMETSP1137-20121227|3456_1 161 SRKG-SRTVDADEEPQ--TQKSSAAEARPAFKKvGGTVTAANASTLSDGAAALVLMSRDAADAHGATVLATIKGYADAEQAPSLFTTAPALAIPKAVENSGLQMDQVDFFEINEAFSVVAVANSKLLGLP--AAQVNVHGGAVALGHPIGCSGARIVVTLLSVLKQRKGRFGVAGICNGGGGASALVVENV 346
                 6888.7789****988..666677888888765389*********************************************************************************************8..689*****************************************************986 PP

>> TIGR02445  fadA: acetyl-CoA C-acyltransferase FadA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.7   0.7   1.8e-14   1.5e-11      51     123 ..      34     105 ..      15     162 .. 0.83
   2 !  145.4   2.4   5.9e-46   4.9e-43     202     384 ..     168     345 ..     161     346 .. 0.94

  Alignments for each domain:
  == domain 1    score: 41.7 bits;  conditional E-value: 1.8e-14
   TIGR02445  51 iywgcvqqtleqgfniarnaallaevphevaavtvnrlcgssmqalhdaaraimtgdaevcliggvehmghvs 123
                 ++ g v      g   ar+aalla++p +  + t+n++c s ++a+  +a+ im g+a+v++ gg+e m   +
  MMETSP1137-20121227|3456_1  34 VWMGNVLS-AGLGQAPARQAALLAKLPDSACCTTINKVCSSGIKAVVLGAQQIMLGQADVIVAGGMESMSNAP 105
                 54454432.33456679****************************************************9876 PP

  == domain 2    score: 145.4 bits;  conditional E-value: 5.9e-46
   TIGR02445 202 ldydevirpettvealaalrpafdpkngtvtagtssalsdgasamlvmseeraqelgvkprarirsmavagvdpsimgygpvpatkkalkraglsisdidvlelneafaaqalpvlkdlglldkldekvnlnggaialghplgcsgaristtllnlmerkdakfglatmciglgqgiatvfer 384
                 +d de   p+t   + a+ rpaf+ ++gtvta  +s+lsdga+a+++ms + a+  g +++a i++ a a   ps++   p  a  ka+ ++gl ++++d++e+neaf+  a+   k lgl      +vn++gga+alghp+gcsgari  tll ++++++++fg+a +c g g   a v e 
  MMETSP1137-20121227|3456_1 168 VDADE--EPQTQKSSAAEARPAFKKVGGTVTAANASTLSDGAAALVLMSRDAADAHGATVLATIKGYADAEQAPSLFTTAPALAIPKAVENSGLQMDQVDFFEINEAFSVVAVANSKLLGL---PAAQVNVHGGAVALGHPIGCSGARIVVTLLSVLKQRKGRFGVAGICNGGGGASALVVEN 345
                 55555..699999***********************************************************************************************9988777666665...5789*********************************************9999999886 PP

>> TIGR02446  FadI: acetyl-CoA C-acyltransferase FadI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3   0.2     3e-08   2.5e-05      43     128 ..      21     106 ..      15     112 .. 0.93
   2 ?    2.1   0.0     0.021        17     177     205 ..     139     167 ..     133     174 .. 0.83
   3 !   85.2   7.8   1.3e-27     1e-24     244     428 ..     178     344 ..     166     346 .. 0.93

  Alignments for each domain:
  == domain 1    score: 21.3 bits;  conditional E-value: 3e-08
   TIGR02446  43 larseidaklieqlvfgqvvqmpeapniareivlgtgmnvhtdaysvtracatsfqsavnvaesimagaieigiaggadsssvlpi 128
                 l+rs + a+l++q+ +g+v+        ar+  l + +  ++ + ++ + c++ ++++v  a+ im g+ ++ +agg +s s  p 
  MMETSP1137-20121227|3456_1  21 LTRSGLSADLVQQVWMGNVLSAGLGQAPARQAALLAKLPDSACCTTINKVCSSGIKAVVLGAQQIMLGQADVIVAGGMESMSNAPY 106
                 89******************99888888****************************************************998875 PP

  == domain 2    score: 2.1 bits;  conditional E-value: 0.021
   TIGR02446 177 smgqtaeqmaktygitraeqdalahrsht 205
                 +mg  ae  a t gi raeq    + s t
  MMETSP1137-20121227|3456_1 139 HMGSFAELCAETLGIDRAEQXXSRKGSRT 167
                 7*******************877666665 PP

  == domain 3    score: 85.2 bits;  conditional E-value: 1.3e-27
   TIGR02446 244 ladyaklrpafdrkygsvtaanstpltdgaaavilmsegrakelgleilgyirsyaftaidveqdmllgpsyatplalkraglelsdltlidmheafaaqtlanvkllasekfaeeklgrakaigeidmskfnvlggsiayghpfaatgarlitqtlrelkrrggglglatacaagglgaamile 428
                  ++ a  rpaf +  g+vtaan++ l+dgaaa++lms   a + g ++l  i++ya  a +  + +   p+ a p+a++++gl+++++ + ++ eaf+  ++an kll+                     + nv gg++a ghp+ ++gar++   l  lk+r g +g+a  c  gg  +a+++e
  MMETSP1137-20121227|3456_1 178 KSSAAEARPAFKKVGGTVTAANASTLSDGAAALVLMSRDAADAHGATVLATIKGYAD-AEQAPSLFTTAPALAIPKAVENSGLQMDQVDFFEINEAFSVVAVANSKLLGL-----------------PAAQVNVHGGAVALGHPIGCSGARIVVTLLSVLKQRKGRFGVAGICNGGGGASALVVE 344
                 5677999************************************************95.6677888999************************************999863.................34578*********************************************999**998 PP

>> TIGR03150  fabF: beta-ketoacyl-acyl-carrier-protein synthase II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.9     7e-07   0.00057     153     192 ..      63     102 ..      51     105 .. 0.88
   2 !   29.4   0.8   8.3e-11   6.8e-08     229     354 ..     203     318 ..     196     325 .. 0.81

  Alignments for each domain:
  == domain 1    score: 16.5 bits;  conditional E-value: 7e-07
   TIGR03150 153 pnlavvtACatgthaigeaarlikegeadvmiagGaeaai 192
                  ++++   C++g +a+  +a+ i  g+adv++agG e++ 
  MMETSP1137-20121227|3456_1  63 CCTTINKVCSSGIKAVVLGAQQIMLGQADVIVAGGMESMS 102
                 56777889*****************************875 PP

  == domain 2    score: 29.4 bits;  conditional E-value: 8.3e-11
   TIGR03150 229 lgeGagvlvlEelehAkaRgAkiyaevvGyglsaDAyHitapaeegegaaramkaalkdaglkpeevdyinaHgtstplgdkaEtkai..kkvfgehakklavsstKsmtGHlLGaaGaveavitvla 354
                 l++Ga+ lvl + + A a gA+++a + Gy+ +  A     p+   ++ a a+ +a++++gl+ ++vd+         +++++ + a+   k++g  a++++v     ++GH +G +Ga   v  +  
  MMETSP1137-20121227|3456_1 203 LSDGAAALVLMSRDAADAHGATVLATIKGYADAEQA-----PSLFTTAPALAIPKAVENSGLQMDQVDFFE-------INEAFSVVAVanSKLLGLPAAQVNVHGGAVALGHPIGCSGARIVVTLLSV 318
                 89****************************877766.....5555556789******************86.......455555555522689*************************9654443333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (347 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       125  (0.0304729); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.41u 0.14s 00:00:00.55 Elapsed: 00:00:00.48
# Mc/sec: 954.17
//
Query:       MMETSP1137-20121227|3458_1  [L=293]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (293 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        82  (0.0199902); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.16s 00:00:00.40 Elapsed: 00:00:00.44
# Mc/sec: 878.93
//
Query:       MMETSP1137-20121227|3459_1  [L=303]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (303 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       331  (0.0806923); expected 82.0 (0.02)
Passed bias filter:                      211  (0.0514383); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.17s 00:00:00.53 Elapsed: 00:00:00.48
# Mc/sec: 833.18
//
Query:       MMETSP1137-20121227|3460_1  [L=1023]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1023 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       148  (0.03608); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.61u 0.15s 00:00:00.76 Elapsed: 00:00:00.77
# Mc/sec: 1753.57
//
Query:       MMETSP1137-20121227|3462_1  [L=418]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (418 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        78  (0.0190151); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.15s 00:00:00.43 Elapsed: 00:00:00.39
# Mc/sec: 1414.65
//
Query:       MMETSP1137-20121227|3463_1  [L=441]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0023   16.2   9.5       0.34    9.2   0.5    3.7  3  TIGR02267 TIGR02267: Myxococcus xanthus paralogous family TIGR02267


Domain annotation for each model (and alignments):
>> TIGR02267  TIGR02267: Myxococcus xanthus paralogous family TIGR02267
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.2   0.5   8.4e-05      0.34      73     106 ..      77     111 ..      68     117 .. 0.83
   2 !    6.0   0.1    0.0008       3.3      82     110 ..     239     267 ..     233     278 .. 0.85
   3 !    4.6   0.2    0.0022       9.2      82     104 ..     408     430 ..     387     433 .. 0.88

  Alignments for each domain:
  == domain 1    score: 9.2 bits;  conditional E-value: 8.4e-05
   TIGR02267  73 srrlsral.teavrrrdaGdldgaralledvlave 106
                   r++ +l ++av  ++aGd +ga a l+++ a e
  MMETSP1137-20121227|3463_1  77 GARMVSSLkSRAVELKRAGDKEGALAALREAKALE 111
                 356766663689******************99887 PP

  == domain 2    score: 6.0 bits;  conditional E-value: 0.0008
   TIGR02267  82 eavrrrdaGdldgaralledvlavevvPl 110
                 +av  ++aGd +ga + l+++   e + +
  MMETSP1137-20121227|3463_1 239 KAVELKRAGDKEGALQCLREAKKLEAIQV 267
                 68999***************999988765 PP

  == domain 3    score: 4.6 bits;  conditional E-value: 0.0022
   TIGR02267  82 eavrrrdaGdldgaralledvla 104
                 +av  ++aGd++ga a+l+++ a
  MMETSP1137-20121227|3463_1 408 GAVASKRAGDMNGAIAKLREAKA 430
                 57889*************99866 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (441 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       113  (0.0275475); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.31u 0.17s 00:00:00.48 Elapsed: 00:00:00.54
# Mc/sec: 1077.91
//
Query:       MMETSP1137-20121227|3464_1  [L=424]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (424 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        95  (0.0231594); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.10s 00:00:00.41 Elapsed: 00:00:00.55
# Mc/sec: 1017.52
//
Query:       MMETSP1137-20121227|3465_1  [L=375]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (375 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       208  (0.050707); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.16s 00:00:00.44 Elapsed: 00:00:00.41
# Mc/sec: 1207.22
//
Query:       MMETSP1137-20121227|3466_1  [L=243]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (243 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        64  (0.0156021); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.15s 00:00:00.35 Elapsed: 00:00:00.56
# Mc/sec: 572.74
//
Query:       MMETSP1137-20121227|3468_1  [L=494]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      1e-07   28.3   0.2    1.4e-06   24.5   0.0    2.3  3  TIGR00198 cat_per_HPI: catalase/peroxidase HPI


Domain annotation for each model (and alignments):
>> TIGR00198  cat_per_HPI: catalase/peroxidase HPI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.5   0.0   3.5e-10   1.4e-06     423     592 ..     160     328 ..     152     362 .. 0.79
   2 !    0.8   0.0    0.0052        21     293     367 ..     339     412 ..     330     417 .. 0.79
   3 ?   -2.6   0.0     0.055   2.3e+02     369     396 ..     450     477 ..     446     482 .. 0.83

  Alignments for each domain:
  == domain 1    score: 24.5 bits;  conditional E-value: 3.5e-10
   TIGR00198 423 prrdyelsekdikelkrrila.....sg.....l..svselvsvawasastfrs.sdkrggangarirlkpqkdwevnepeelakvlavlekiqkefakgkvsladlivlggvaavekaaraaglsvkvpflpgrvdarqektdaelfellepiadgfrnylkrdvvstpeellvdkaqlltl 592
                 pr dyel+e +++ lk ++++     +g     l  s+ el+ + +  a+ f +  d  gg ng  + l     + +n  + l  +++ le++q++++   v++adl vl+ +aave a    g    +pf  gr+da    +  ++f + +p ++  rn   +++ s  e l + + q  +l
  MMETSP1137-20121227|3468_1 160 PRGDYELTETQVETLKSAVMEnirrdTGsfagsLadSMGELLRLVFHDAAPFSGrEDSTGGLNGC-VDL----AFSAN--AGLHLAITFLEEVQENMDF-DVTMADLSVLAAMAAVEAAG---G-P-VIPFKYGRGDADCFDAPDDFFFP-NPESNAARNSSGELDESMVERLGLSRRQVTAL 328
                 8899***********9998752222223222223446889***9999999998636899999997.444....46777..788999**********965.9***************9653...3.3.38*********987776666654.78899999999999999999988888877665 PP

  == domain 2    score: 0.8 bits;  conditional E-value: 0.0052
   TIGR00198 293 tltsglevvwtttp..tkfdnnyleilfkyewelkkspagaiqfeavdakeiikdaedpnkkrkpimlvadlalrfd 367
                 +  sg e+ w +    + fdn +++ +++  w+++    g+   ea+d      +   p +    +ml++d  l fd
  MMETSP1137-20121227|3468_1 339 ARFSGYEGGWVRADqrALFDNAFYTGMINLPWVKTTKRVGS---EAMDTARTLTEWRIPLRTSDSMMLNTDGILGFD 412
                 56699*****87551167****************9998886...677777778888888888888888888777776 PP

  == domain 3    score: -2.6 bits;  conditional E-value: 0.055
   TIGR00198 369 efekisrrfleepeefeeafakawfklt 396
                 e+ +  + f  + e f+e fa a+ +l 
  MMETSP1137-20121227|3468_1 450 EYGEAVQAFAADNEVFKEEFASAFVQLV 477
                 677778899999***********99885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (494 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       113  (0.0275475); expected 82.0 (0.02)
Passed bias filter:                      102  (0.0248659); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.16s 00:00:00.55 Elapsed: 00:00:00.46
# Mc/sec: 1417.45
//
Query:       MMETSP1137-20121227|3469_1  [L=219]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (219 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        36  (0.00877621); expected 82.0 (0.02)
Passed bias filter:                       34  (0.00828864); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.16s 00:00:00.36 Elapsed: 00:00:00.33
# Mc/sec: 875.93
//
Query:       MMETSP1137-20121227|3470_1  [L=244]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (244 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       125  (0.0304729); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.13s 00:00:00.34 Elapsed: 00:00:00.35
# Mc/sec: 920.15
//
Query:       MMETSP1137-20121227|3471_1  [L=235]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.8e-10   37.2   0.0    1.2e-09   36.1   0.0    1.4  1  TIGR02072 BioC: biotin biosynthesis protein BioC
    3.3e-07   27.8   0.0    4.9e-07   27.2   0.0    1.3  1  TIGR02021 BchM-ChlM: magnesium protoporphyrin O-methyltransferase
    8.2e-07   26.4   0.1    1.5e-06   25.5   0.1    1.3  1  TIGR01983 UbiG: 3-demethylubiquinone-9 3-O-methyltransferase
    0.00018   18.7   0.0    0.00027   18.1   0.0    1.2  1  TIGR01934 MenG_MenH_UbiE: ubiquinone/menaquinone biosynthesis methyltransferase
     0.0016   15.9   0.1     0.0029   15.0   0.0    1.3  1  TIGR02081 metW: methionine biosynthesis protein MetW
      0.008   13.7   0.0      0.038   11.5   0.0    2.0  1  TIGR00537 hemK_rel_arch: putative methylase


Domain annotation for each model (and alignments):
>> TIGR02072  BioC: biotin biosynthesis protein BioC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.1   0.0   1.8e-12   1.2e-09      38     110 ..       9      80 ..       3      87 .. 0.90

  Alignments for each domain:
  == domain 1    score: 36.1 bits;  conditional E-value: 1.8e-12
   TIGR02072  38 vLdiGcGtGiltrallkrfpqaelialDiseemleqakkklsnvqficgdiek.lplekksfDlivSnlalQWl 110
                 +Ld+GcGtG+  + l+++     +i +Dis+ ml+ ak ++   + i+ d+ + +++++  fD  +S +alQWl
  MMETSP1137-20121227|3471_1   9 LLDVGCGTGLSGETLREEGHS--WIGVDISADMLRAAKVREADGDLIHRDMGRgMNFRQGVFDGAISISALQWL 80 
                 69*******999999998765..5******************99******965499*****************7 PP

>> TIGR02021  BchM-ChlM: magnesium protoporphyrin O-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.2   0.0   7.1e-10   4.9e-07      58     101 ..       9      52 ..       2      90 .. 0.80

  Alignments for each domain:
  == domain 1    score: 27.2 bits;  conditional E-value: 7.1e-10
   TIGR02021  58 vlDAGCGtGllsielAkrGaivkavDiseklvelarkraekede 101
                 +lD GCGtGl  ++l ++G    +vDis++++  a+ r  + d 
  MMETSP1137-20121227|3471_1   9 LLDVGCGTGLSGETLREEGHSWIGVDISADMLRAAKVREADGDL 52 
                 89*********************************999887765 PP

>> TIGR01983  UbiG: 3-demethylubiquinone-9 3-O-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.5   0.1   2.2e-09   1.5e-06      53      94 ..       9      50 ..       4      64 .. 0.91

  Alignments for each domain:
  == domain 1    score: 25.5 bits;  conditional E-value: 2.2e-09
   TIGR01983 53 vlDvGcGgGllseslarlgaevtgiDlseelievAklhakkd 94
                +lDvGcG Gl  e+l ++g + +g+D+s++++++Ak+ ++  
  MMETSP1137-20121227|3471_1  9 LLDVGCGTGLSGETLREEGHSWIGVDISADMLRAAKVREADG 50
                89**********************************987665 PP

>> TIGR01934  MenG_MenH_UbiE: ubiquinone/menaquinone biosynthesis methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.0     4e-07   0.00027      43      85 ..       9      50 ..       3      76 .. 0.76

  Alignments for each domain:
  == domain 1    score: 18.1 bits;  conditional E-value: 4e-07
   TIGR01934 43 vlDvatGtGdlaielakkaeakvtgvDlseemLevakkkakek 85
                +lDv +GtG    +l ++   + +gvD+s++mL+ ak +  + 
  MMETSP1137-20121227|3471_1  9 LLDVGCGTGLSGETLREEG-HSWIGVDISADMLRAAKVREADG 50
                79*******9887776655.8899*************996544 PP

>> TIGR02081  metW: methionine biosynthesis protein MetW
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   4.2e-06    0.0029      17      87 ..       9      79 ..       4      86 .. 0.85

  Alignments for each domain:
  == domain 1    score: 15.0 bits;  conditional E-value: 4.2e-06
   TIGR02081 17 vLDlGcGdGeLLallrdekqvegaGleideenvlacvarGv..eviqqdldegLeafedksfDvvvlsqtlqa 87
                 LD+GcG G   ++lr+e   +  G++i+++++ a+  r    + i+ d+ +g+ +f++  fD ++   +lq 
  MMETSP1137-20121227|3471_1  9 LLDVGCGTGLSGETLREE-GHSWIGVDISADMLRAAKVREAdgDLIHRDMGRGM-NFRQGVFDGAISISALQW 79
                69*************776.55789************999873369********8.589999**9999888886 PP

>> TIGR00537  hemK_rel_arch: putative methylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.5   0.0   5.6e-05     0.038      23      75 ..       9      57 ..       3     133 .. 0.78

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 5.6e-05
   TIGR00537 23 vleiGaGtGlvairlkekgkkivatdinPfavkllkenaklnnveldvlesdl 75
                +l++G GtGl  + l+e g+  +++di+    +     ak+ + + d+++ d+
  MMETSP1137-20121227|3471_1  9 LLDVGCGTGLSGETLREEGHSWIGVDISADMLR---A-AKVREADGDLIHRDM 57
                589************************964333...3.555555555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (235 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       122  (0.0297416); expected 82.0 (0.02)
Passed bias filter:                       99  (0.0241346); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.24u 0.16s 00:00:00.40 Elapsed: 00:00:00.41
# Mc/sec: 756.52
//
Query:       MMETSP1137-20121227|3472_1  [L=1077]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1077 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       141  (0.0343735); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.68u 0.18s 00:00:00.86 Elapsed: 00:00:00.62
# Mc/sec: 2292.78
//
Query:       MMETSP1137-20121227|3473_1  [L=496]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (496 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       126  (0.0307167); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.15s 00:00:00.48 Elapsed: 00:00:00.65
# Mc/sec: 1007.18
//
Query:       MMETSP1137-20121227|3474_1  [L=526]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (526 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       121  (0.0294978); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.17s 00:00:00.55 Elapsed: 00:00:00.36
# Mc/sec: 1928.51
//
Query:       MMETSP1137-20121227|3475_1  [L=216]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (216 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        65  (0.0158459); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.16s 00:00:00.35 Elapsed: 00:00:00.28
# Mc/sec: 983.09
//
Query:       MMETSP1137-20121227|3476_1  [L=542]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.7e-06   21.6   0.0    1.2e-05   21.2   0.0    1.1  1  TIGR03903 TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
    4.4e-05   20.9   0.0    7.8e-05   20.1   0.0    1.3  1  TIGR03724 arch_bud32: Kae1-associated kinase Bud32


Domain annotation for each model (and alignments):
>> TIGR03903  TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.0   5.7e-09   1.2e-05      83     130 ..       4      51 ..       1      60 [. 0.92

  Alignments for each domain:
  == domain 1    score: 21.2 bits;  conditional E-value: 5.7e-09
   TIGR03903  83 rLmlqvLDalaaahdaGvvhRDLkPqnimvsaadveshakvLDFGiga 130
                  L++++L a+   h++GvvhRD+k +n +   + ++ + k++DFG +a
  MMETSP1137-20121227|3476_1   4 TLVAKMLSAVLYCHNKGVVHRDIKLDNFIYEDEAEDAELKLIDFGFAA 51 
                 68999****************************************987 PP

>> TIGR03724  arch_bud32: Kae1-associated kinase Bud32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.0   3.8e-08   7.8e-05      96     146 ..       6      60 ..       2      75 .. 0.83

  Alignments for each domain:
  == domain 1    score: 20.1 bits;  conditional E-value: 3.8e-08
   TIGR03724  96 lkevGelvgklHkagivhgDlttsNiivk....ddklyliDfGLgkkskevedka 146
                 + ++  +v  +H++g+vh D+   N+i++    d +l liDfG +   +++  +a
  MMETSP1137-20121227|3476_1   6 VAKMLSAVLYCHNKGVVHRDIKLDNFIYEdeaeDAELKLIDFGFAAEVARASYMA 60 
                 56666788899*****************755557789*******99877776666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (542 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        92  (0.0224281); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.13s 00:00:00.51 Elapsed: 00:00:00.54
# Mc/sec: 1324.78
//
Query:       MMETSP1137-20121227|3477_1  [L=766]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        4.3    2.6  18.2        7.9    1.7  12.6    1.3  1  TIGR00927 2A1904: K+-dependent Na+/Ca+ exchanger


Domain annotation for each model (and alignments):
>> TIGR00927  2A1904: K+-dependent Na+/Ca+ exchanger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7  12.6    0.0019       7.9     961    1001 ..     536     576 ..     510     586 .. 0.58

  Alignments for each domain:
  == domain 1    score: 1.7 bits;  conditional E-value: 0.0019
   TIGR00927  961 dekGvdgeggsdGGdseeeeeeeeeeeeeeeeeeeeeeeee 1001
                   e    +e+++d G+ ++++++++++ e + eeeeeeeeee
  MMETSP1137-20121227|3477_1  536 AEAASADEDEADEGNDDDDDDNDDDDGEGDGEEEEEEEEEE 576 
                  34444555666666555555555543332222222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (766 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       114  (0.0277913); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.17s 00:00:00.67 Elapsed: 00:00:00.51
# Mc/sec: 1982.42
//
Query:       MMETSP1137-20121227|3478_1  [L=199]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      0.001   16.3   0.0     0.0015   15.7   0.0    1.2  1  TIGR03448 mycothiol_MshD: mycothiol synthase
  ------ inclusion threshold ------
      0.038   11.9   0.0      0.056   11.3   0.0    1.3  1  TIGR02406 ectoine_EctA: diaminobutyrate acetyltransferase


Domain annotation for each model (and alignments):
>> TIGR03448  mycothiol_MshD: mycothiol synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   7.5e-07    0.0015     228     289 ..     111     174 ..     102     178 .. 0.82

  Alignments for each domain:
  == domain 1    score: 15.7 bits;  conditional E-value: 7.5e-07
   TIGR03448 228 lgEvYvvgvdpaaqgrGLGkaLtliGlkhleerglravlLY..veadneaAvrtYekLgFtvae 289
                   E+ v+   p+a++rGL     li ++++ ++  + v+    + +dnea ++++ kLgF+ ++
  MMETSP1137-20121227|3478_1 111 YAELEVMIALPSARRRGLAGRCLLIFMHYMLQHLPKIVVFGakITNDNEASMKLFYKLGFKLYK 174
                 5677888889********8888899999999887666665334789**************9875 PP

>> TIGR02406  ectoine_EctA: diaminobutyrate acetyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   2.7e-05     0.056      77     124 ..     122     171 ..     115     190 .. 0.71

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 2.7e-05
   TIGR02406  77 karGkglakrlleallerealeevks...vEatitpdneAskalFkklaqr 124
                 +ar +gla r l   ++   l++  +     a it+dneAs +lF kl+ +
  MMETSP1137-20121227|3478_1 122 SARRRGLAGRCLLIFMHY-MLQHLPKivvFGAKITNDNEASMKLFYKLGFK 171
                 677788888877554443.4444333333799**************99865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (199 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        90  (0.0219405); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.17u 0.18s 00:00:00.35 Elapsed: 00:00:00.28
# Mc/sec: 938.07
//
Query:       MMETSP1137-20121227|3479_1  [L=416]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (416 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        78  (0.0190151); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.16s 00:00:00.44 Elapsed: 00:00:00.44
# Mc/sec: 1247.90
//
Query:       MMETSP1137-20121227|3480_1  [L=751]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.7e-05   21.7   0.1    3.1e-05   20.9   0.0    1.3  1  TIGR02151 IPP_isom_2: isopentenyl-diphosphate delta-isomerase, type 2


Domain annotation for each model (and alignments):
>> TIGR02151  IPP_isom_2: isopentenyl-diphosphate delta-isomerase, type 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   0.0   7.6e-09   3.1e-05     246     294 ..     556     604 ..     544     640 .. 0.87

  Alignments for each domain:
  == domain 1    score: 20.9 bits;  conditional E-value: 7.6e-09
   TIGR02151 246 taasllevrsaakkleliasGGlrsgldvakalaLGAdlvglarplLka 294
                  ++s+l+  +  +++ +iasG + +g+ ++k++aLGAdl  +ar+++ a
  MMETSP1137-20121227|3480_1 556 LVDSMLMGADLREEIRIIASGKVYNGFTLVKTIALGADLCNSARSMMFA 604
                 56777877787889*****************************998754 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (751 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       101  (0.0246221); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.16s 00:00:00.63 Elapsed: 00:00:00.41
# Mc/sec: 2417.65
//
Query:       MMETSP1137-20121227|3481_1  [L=188]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (188 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       126  (0.0307167); expected 82.0 (0.02)
Passed bias filter:                      101  (0.0246221); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.18s 00:00:00.36 Elapsed: 00:00:00.88
# Mc/sec: 281.98
//
Query:       MMETSP1137-20121227|3482_1  [L=429]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.8e-37  127.1  20.8      3e-37  126.4  14.4    1.3  1  TIGR00881 2A0104: phosphoglycerate transporter family protein
    7.4e-28   95.4  27.5    1.1e-27   94.8  19.1    1.2  1  TIGR00893 2A0114: D-galactonate transporter
    1.8e-17   61.1  32.8    4.9e-10   36.7   6.9    4.0  3  TIGR00895 2A0115: MFS transporter, aromatic acid:H+ symporter (AAHS) family
    3.8e-15   53.7  25.8    2.6e-14   50.9  17.9    1.8  1  TIGR00712 glpT: glycerol-3-phosphate transporter
    2.2e-10   38.7  18.0    2.2e-10   38.7  12.5    3.5  4  TIGR00880 2_A_01_02: multidrug resistance protein
      1e-09   35.5  17.6    2.1e-06   24.6   7.4    2.2  2  TIGR00711 efflux_EmrB: drug resistance MFS transporter, drug:H+ antiporter-2 (14 Spanner) (DHA2) family
     0.0014   15.3   8.2     0.0014   15.3   5.7    2.2  3  TIGR00898 2A0119: cation transport protein
     0.0088   13.3  23.1      0.013   12.7  12.8    2.2  2  TIGR00710 efflux_Bcr_CflA: drug resistance transporter, Bcr/CflA subfamily
  ------ inclusion threshold ------
       0.04   10.8  21.3      0.068   10.0  11.3    2.6  2  TIGR00891 2A0112: MFS transporter, sialate:H+ symporter (SHS) family


Domain annotation for each model (and alignments):
>> TIGR00881  2A0104: phosphoglycerate transporter family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  126.4  14.4   6.5e-40     3e-37       2     379 .]      16     392 ..      15     392 .. 0.86

  Alignments for each domain:
  == domain 1    score: 126.4 bits;  conditional E-value: 6.5e-40
   TIGR00881   2 igylayylvRknfalalpelqeeiglsktdlGlllsafsiaYgiskfvvgvvsDrvsarvflaigLilvaivnlflgfssslwvliallalnGlfqglgwppcgrlltkwfsrserGtvvaiwnishnvggallpplvllaialllswhvvfivpgiiaiivslilllllrdspqsvglpkleelrneekeedkekkeeeltkkeillqyvlknkvlwlislvnvfvyvvrtgiedWvplYltqekglskekasvavtlfelaglvGtllaGwlsDklfkgrraplavifmaliivsllvywlivaan.....klvvlillfvlGflvyGpilligvaase........lapkkaiGtaaglvglfaylggilaglplgyladlfgwagaf 379
                 + y+ +y+ Rk fa++   +  e+ +s++ l  + s+  +aY+is+++ g      +++  + ++ + +++++  +g + s  ++  ++  +G++ ++++p+   +l+  +++  r+t+++ w++ + +gg+ +  +v +a+   +sw++vf+ +g+i  +++ illl+l  + +  g + + ++           ke++ + k + ++ +l+ + ++ +++++ +v + r+++  W+p +l   +g+s+  a ++  ++ l+g  G++l G+  D++++g+  ++ +  +    ++ll  +    a        + +++++++Gf + +p  ++g a s         ++   +++t +g+++  +++g+++ g+ +++++d+fgw+g f
  MMETSP1137-20121227|3482_1  16 FAYAGIYFARKPFAVVKGTIETELSFSRDALAAIDSSLLVAYAISQLLLGKTVSFLGQKTPIILAFFIAGAATACVGLMDSSLAMSFFWGTSGFAAAVASPLFCIILADIMPPAIRATAIGAWSSCQQLGGIAAN-IVSAAVLANYSWRAVFYTSGAIVSMFAPILLLVLPAT-ERAGSSTVAKD-----------KEQAQNGKPSSDTSILQVPGAISVAVSYTLVKMSRYCLMFWLPYFLARHLGMSAAAAGTVSAALDLGGGLGSILGGIACDRFYNGKSLAISFHLALATSLGLLAWTGAS-AAlspppMALHVAAILLVGFCIAVPDGVLGGASSRslvdyagiVGNGALVATISGVINGCGSVGAVAQGVLTSKIIDHFGWNGLF 392
                 78********************************************************************************************************************************98877.9*******************88888887777776443.33444443333...........334456788999***********************************************************************99987777665555555554444322.224575434456778899********99987766522112111345678999******************************987 PP

>> TIGR00893  2A0114: D-galactonate transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.8  19.1   2.4e-30   1.1e-27       8     399 .]      23     410 ..      17     410 .. 0.86

  Alignments for each domain:
  == domain 1    score: 94.8 bits;  conditional E-value: 2.4e-30
   TIGR00893   8 ldratlSiAavtlkedLglsaaqyglvfsafsigyvlfqlpggllldriGakktlavaivlWglftllqafatalvslivlRvllGlaEaplfPgiikivasWFPakeratavsifnsaqalgaiiggplvgwilvefsWqlvFiieGvlaiilgvlilkvikdkpekakvlkeeeksivvggllaeqagkknseakkaqikelLkdrrviglalgqflvnillyffltwfplylkqerglslleagllaslpaivgfvgmvlggilsdlllkkgkslvlarktaiiaglvlsllliatn.lva.skiaalalvalaffgkgl..aailwavisdvl.......skeiagltgGlinllGnlagivgPivigaiaattGsfagallvvaalaligalsvlllv 399
                   r   ++   t++++L +s +++  + s+  ++y++ ql+ g  +  +G k+ + +a ++ g  t+ ++++++  ++       G a a+++P + +i+a   P++ rata++ + s q+lg+i ++ +++ +l++ sW++vF  +G++  + + ++l v++  ++    + +++k+ +++g             k ++ + +L+ + +i +a+++ lv++  y ++ w p +l   +g+s+  ag +++   + g +g +lggi  d +++  ksl ++  +a+ + l l + ++a + l++ + ++ +a + l++f+ ++  + ++ a + + +       +++ +++  G+in  G +++++   ++  i +  G ++g +l +++++l+++ls+l +v
  MMETSP1137-20121227|3482_1  23 FARKPFAVVKGTIETELSFSRDALAAIDSSLLVAYAISQLLLGKTVSFLGQKTPIILAFFIAGAATACVGLMDSSLAMSFFWGTSGFAAAVASPLFCIILADIMPPAIRATAIGAWSSCQQLGGIAANIVSAAVLANYSWRAVFYTSGAIVSMFAPILLLVLPATERAGSSTVAKDKEQAQNG-------------KPSSDTSILQVPGAISVAVSYTLVKMSRYCLMFWLPYFLARHLGMSAAAAGTVSAALDLGGGLGSILGGIACDRFYNG-KSLAISFHLALATSLGLLAWTGASAaLSPpPMALHVAAILLVGFCIAVpdGVLGGASSRSLVdyagivgNGALVATISGVINGCGSVGAVAQGVLTSKIIDHFG-WNGLFLSLSGAMLLASLSLLKAV 410
                 556666667778*************************************************************8888888899*******************************************************************************998884444444444444444.............78999***********************************************************************98.588888888888888888777777745552334457777788888776633333333333322222333678899999**************************.******************99765 PP

>> TIGR00895  2A0115: MFS transporter, aromatic acid:H+ symporter (AAHS) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.1   6.4   1.8e-09   8.3e-07     251     398 .]       6     157 ..       2     157 .. 0.81
   2 !   36.7   6.9   1.1e-12   4.9e-10     151     363 ..     143     340 ..     140     345 .. 0.73
   3 !    8.8   0.8   0.00031      0.14     151     176 ..     369     394 ..     353     411 .. 0.76

  Alignments for each domain:
  == domain 1    score: 26.1 bits;  conditional E-value: 1.8e-09
   TIGR00895 251 atllLwllyflllvvvYlltsWlP....kLlveagaslskaalllvllnvGgvlgslllgaladrlgpk.vlalllllaavfavlvvstlssptllllllvilGlfvngaqsgllalmaefYptaiRatgvgwaigiGrlgaiigpilagvll 398
                 +  +++ ++ +  +++Y++ +       +++ e+++s +  a++  +l v+ ++++lllg  + +lg+k  ++l + +a+     v+  + s+  + ++    G++++ a   +  + a++ p+aiRat++g   ++ +lg+i + i+ + +l
  MMETSP1137-20121227|3482_1   6 RAAVIFGTTYFAYAGIYFARKPFAvvkgTIETELSFSRDALAAIDSSLLVAYAISQLLLGKTVSFLGQKtPIILAFFIAGAATACVGL-MDSSLAMSFFWGTSGFAAAVASPLFCIILADIMPPAIRATAIGAWSSCQQLGGIAANIVSAAVL 157
                 55666667777777777776654422235677888888888999999**********************7555555556665566666.7888889999999*********************************************998765 PP

  == domain 2    score: 36.7 bits;  conditional E-value: 1.1e-12
   TIGR00895 151 aiGaavggllaallipafgWrslflvggiiplllllllikvLpEsikflvekkpekvrkilnaiapslqaeaqselaeekseekkkrsvvkllfkgklakatllLwllyflllvvvYlltsWlP.kLlveagaslskaalllvllnvGgvlgslllgaladrlgpk..vlallllla....avfavlvvstlssp...tllllllvilGlfvngaqsgllalm 363
                 ++G++ + +++a +++++ Wr +f+  g+i  + +++l  vLp  ++   +                      + ++ ++++++ k s+   +++       + + ++y+l  ++ Y l+ WlP +L +++g+s+  a ++ ++l +Gg lgs+l g++ dr+  +    +++ l+     + +a   +s + sp   +l + +++++G++++ + ++l +++
  MMETSP1137-20121227|3482_1 143 QLGGIAANIVSAAVLANYSWRAVFYTSGAIVSMFAPILLLVLPATERAGSS----------------------TVAKDKEQAQNGKPSSDTSILQV---PGAISVAVSYTLVKMSRYCLMFWLPyFLARHLGMSAAAAGTVSAALDLGGGLGSILGGIACDRFYNGksLAISFHLALatslGLLAWTGASAALSPppmALHVAAILLVGFCIAVPDGVLGGAS 340
                 79*****************************************76543333......................33444555556666666667664...455667799999*************99************************************9766333333333330111233344444333331112334566778888888877776665 PP

  == domain 3    score: 8.8 bits;  conditional E-value: 0.00031
   TIGR00895 151 aiGaavggllaallipafgWrslflv 176
                  +Ga+  g+l++ +i +fgW  lfl 
  MMETSP1137-20121227|3482_1 369 SVGAVAQGVLTSKIIDHFGWNGLFLS 394
                 79**********************73 PP

>> TIGR00712  glpT: glycerol-3-phosphate transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.9  17.9   5.8e-17   2.6e-14      29     433 ..       9     408 ..       2     415 .. 0.76

  Alignments for each domain:
  == domain 1    score: 50.9 bits;  conditional E-value: 5.8e-17
   TIGR00712  29 qvflgiflgyaayylvrknfalalpylv.eqgfskaelglvlsavsiayglskfimgsvsdrsnprvflaaglllsalvmlllgllpwatssiaimfvllflngwfqgmgwppcgrtmvhwfsksergtivsiwnvahnigggilaalvllgialfvvwkaalylpaiiaiivallvvllvrdtpqscglpsieeyrndypddynekaekeltakeillqyvlknkllwyiaianvfvylvrygvldwspvylkevkhfaledsawayflyeyagipgtllcgwvsdkvfkgkrgatgvlfmilvtiavvvywlnpag....np.lvdlillivigfliygpvmlig.lhalelapk.kaagtaagltglfgylg.....gsvaasaivgyavdrfgwdggflvliggsilavlllll 433
                  +f   ++ ya+ y+ rk fa+    +  e  fs+  l  + s++ +ay +s++++g+       +  +   ++++++ +  +gl+    ss+a+ f +   +g+   +  p     ++  +    r t +  w  ++++gg i a +v  ++   ++w+a++y  + i  ++a +++l++  t    g  ++ +           ++e+    k    + +l+      +a++  +v + ry ++ w p +l+   +++   +       ++ g  g++l g   d++++gk  a  +  ++l+t   +  w   ++     p    + +++++gf i  p  ++g   +  l       g  a ++ + g +      g+va   +   ++d+fgw+g fl l g+ +la l ll 
  MMETSP1137-20121227|3482_1   9 VIFGTTYFAYAGIYFARKPFAVVKGTIEtELSFSRDALAAIDSSLLVAYAISQLLLGKTVSFLGQKTPIILAFFIAGAATACVGLM---DSSLAMSF-FWGTSGFAAAVASPLFCIILADIMPPAIRATAIGAWSSCQQLGG-IAANIVSAAVLANYSWRAVFYTSGAIVSMFAPILLLVLPATE-RAGSSTVAK-----------DKEQAQNGKPSSDTSILQVPGAISVAVSYTLVKMSRYCLMFWLPYFLARHLGMSAAAAGTVSAALDLGGGLGSILGGIACDRFYNGKSLAISF-HLALATSLGLLAWTGASAalspPPmALHVAAILLVGFCIAVPDGVLGgASSRSLVDYaGIVGNGALVATISGVINgcgsvGAVAQGVLTSKIIDHFGWNGLFLSLSGAMLLASLSLLK 408
                 577889****************9998861556*************************99999999999999999999999988887...58888766.66889************************************987.78889999999999********99887777766666555444.445555543...........2333333344444556666667789***********************99999999999999999*********************9776665.55666666666676554436544445566678899******9876661444444433123455555555666655110222333344556789******************9887664 PP

>> TIGR00880  2_A_01_02: multidrug resistance protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.0       5.3   2.4e+03      25      46 ..       3      24 ..       2      26 .. 0.73
   2 !   38.7  12.5   4.7e-13   2.2e-10       3     141 .]      53     187 ..      51     187 .. 0.95
   3 ?    1.3   0.8      0.16        75      84     128 ..     250     294 ..     245     307 .. 0.71
   4 ?    0.6   3.5      0.27   1.2e+02      85     135 ..     357     407 ..     299     410 .. 0.72

  Alignments for each domain:
  == domain 1    score: -3.6 bits;  conditional E-value: 5.3
   TIGR00880 25 vGrkpvllvglfifvlsqllfa 46
                ++r+  +++g+  f+ + + fa
  MMETSP1137-20121227|3482_1  3 ISRRAAVIFGTTYFAYAGIYFA 24
                5788888888888877766665 PP

  == domain 2    score: 38.7 bits;  conditional E-value: 4.7e-13
   TIGR00880   3 llagyAlgqlvvsplsglltdrvGrkpvllvglfifvlsqllfalssnitvliiarilqGfgaaaalvagaaliadiikeeersvalgllsagialgpilGpllGavlaqalgwralflilallallafilllfllpeT 141
                 ll++yA++ql+++  +      +G k ++++ +fi  ++++ + l  +   + +    +Gf+aa+a++    ++adi+++  r+ a+g +s+++ lg i + ++ a++ + ++wra+f++ ++++ +++ +ll++lp T
  MMETSP1137-20121227|3482_1  53 LLVAYAISQLLLGKTVS----FLGQKTPIILAFFIAGAATACVGLMDSSLAMSFFWGTSGFAAAVASPLFCIILADIMPPAIRATAIGAWSSCQQLGGIAANIVSAAVLANYSWRAVFYTSGAIVSMFAPILLLVLPAT 187
                 899**********9999....79**************************************************************************************************999998888888888765 PP

  == domain 3    score: 1.3 bits;  conditional E-value: 0.16
   TIGR00880  84 ersvalgllsagialgpilGpllGavlaqalgwralflilallal 128
                 + ++a g++sa++ lg  lG +lG++  + +     + i   lal
  MMETSP1137-20121227|3482_1 250 MSAAAAGTVSAALDLGGGLGSILGGIACDRFYNGKSLAISFHLAL 294
                 567899999999999999999999998855444344444444444 PP

  == domain 4    score: 0.6 bits;  conditional E-value: 0.27
   TIGR00880  85 rsvalgllsagialgpilGpllGavlaqalgwralflilallallafilll 135
                 ++ + g+++ + ++g++   +l++ +++ +gw  lfl l+  +lla+++ll
  MMETSP1137-20121227|3482_1 357 VATISGVINGCGSVGAVAQGVLTSKIIDHFGWNGLFLSLSGAMLLASLSLL 407
                 444556666667777777777888888999********9999999988765 PP

>> TIGR00711  efflux_EmrB: drug resistance MFS transporter, drug:H+ antiporter-2 (14 Spanner) (DHA2) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.6   7.4   4.6e-09   2.1e-06      23     163 ..      30     170 ..      27     195 .. 0.91
   2 !   15.1   0.4   3.5e-06    0.0016     261     335 ..     223     297 ..     201     329 .. 0.88

  Alignments for each domain:
  == domain 1    score: 24.6 bits;  conditional E-value: 4.6e-09
   TIGR00711  23 valptlaadlgaslsevqWviTsymvanaivIpltgwlakrlgerklflvsvlaFtlssllcgvannlelliifRviQgfggglliplseslllseyppekrglalalvglavlvaPvlGPiLgGwiieayeWrwiFlinv 163
                 v   t+ ++l+ s + ++ +  s +va ai+ +l g   + lg++   +++ ++   ++   g+ ++  ++ +f    gf +++  pl   +l+ ++pp+ r++a++ ++    ++ +   i +  +  +y+Wr +F+   
  MMETSP1137-20121227|3482_1  30 VVKGTIETELSFSRDALAAIDSSLLVAYAISQLLLGKTVSFLGQKTPIILAFFIAGAATACVGLMDSSLAMSFFWGTSGFAAAVASPLFCIILADIMPPAIRATAIGAWSSCQQLGGIAANIVSAAVLANYSWRAVFYTSG 170
                 5667999***********************************************************************************************************************************853 PP

  == domain 2    score: 15.1 bits;  conditional E-value: 3.5e-06
   TIGR00711 261 cvislllglalygavlllPlylqqvlgytalqaGlailpvglaalllsPiaGrladkidlrllvliglilyavgl 335
                  v  +l+ ++ y  ++ lP +l + lg++a  aG  ++ + l   l s + G+  d++   + + i++ l ++++
  MMETSP1137-20121227|3482_1 223 AVSYTLVKMSRYCLMFWLPYFLARHLGMSAAAAGTVSAALDLGGGLGSILGGIACDRFYNGKSLAISFHLALATS 297
                 6778999*************************************************************9988775 PP

>> TIGR00898  2A0119: cation transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   5.7     3e-06    0.0014     373     498 ..      62     187 ..      52     191 .. 0.75
   2 ?   -2.4   0.1      0.73   3.3e+02     137     168 ..     264     295 ..     251     328 .. 0.74
   3 ?   -2.4   0.8      0.71   3.3e+02     132     171 ..     365     403 ..     358     410 .. 0.77

  Alignments for each domain:
  == domain 1    score: 15.3 bits;  conditional E-value: 3e-06
   TIGR00898 373 litlllidrLgRrktmaaslllagvallllllvpeelkllrtalavvgkagissaFqmaylytaELYPTvvRnlgvgvcstmarvGsiisPflvyvlgevslflplvifgvlall...agllsllLPet 498
                 l+   +++ Lg + ++++++++ag+a+  + l+ ++l +        + + ++ a    +++ a + P ++R++++g+ s+  ++G+i + ++++ +  ++ ++ +v + + a++   a +l l+LP t
  MMETSP1137-20121227|3482_1  62 LLLGKTVSFLGQKTPIILAFFIAGAATACVGLMDSSLAMS--FFWGTSGFAAAVASPLFCIILADIMPPAIRATAIGAWSSCQQLGGIAANIVSA-AVLANYSWRAVFYTSGAIVsmfAPILLLVLPAT 187
                 555568999*********************9999994422..222223344444556679999*****************************998.777777777777765555411144666677766 PP

  == domain 2    score: -2.4 bits;  conditional E-value: 0.73
   TIGR00898 137 vGvLlGslvlGqlsDrfGRkkvLllstlvtav 168
                 +G  lGs++ G  +Drf   k L +s   +++
  MMETSP1137-20121227|3482_1 264 LGGGLGSILGGIACDRFYNGKSLAISFHLALA 295
                 56668999999999999777777777655444 PP

  == domain 3    score: -2.4 bits;  conditional E-value: 0.71
   TIGR00898 132 qsvvfvGvLlGslvlGqlsDrfGRkkvLllstlvtavsgv 171
                 + +  vG    +++ +++ D fG  ++L+ls  +++++  
  MMETSP1137-20121227|3482_1 365 NGCGSVGAVAQGVLTSKIIDHFGW-NGLFLSLSGAMLLAS 403
                 5577899999999999******95.788888777666555 PP

>> TIGR00710  efflux_Bcr_CflA: drug resistance transporter, Bcr/CflA subfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.7  12.8   2.9e-05     0.013      31     316 ..      35     329 ..      31     373 .. 0.69
   2 ?    2.5   0.2     0.036        16     148     175 ..     378     405 ..     357     411 .. 0.85

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 2.9e-05
   TIGR00710  31 iakdlsvsasavqltltlyllglavgqLllGplsDsyGRkpvlLlgllv.falsslvlalsenietllvlRflqafgasaalVisqalvrDiyakeelskvysilmlllalaPllapliGgyvlvflsWhaiFavlsligillvaliflllpeTkakekri.......qistsvetfllllkdkellgyalivgassgglfaflsaapfvlidimgvspevfgllfalniialifgsfligrlvkkigaksllrialvllivsav.llvlt.allglvslalviavailvgigvsl 316
                 i+ +ls s  a  +  ++ l+  a++qLllG+    +G k +++l  ++ +a+++ v ++ ++ ++        +f+a++a+ +   ++ Di + +      ++ ++   l  + a ++ + vl   sW+a+F++  +i  + + ++ l+lp T+     +         + + +  +++l+    ++ a  ++ ++ + +  +   p+ l  + g+s +  g + a   +   +gs+l g +  +  + + l i+  l +++++ ll+ t a  +l   ++++ va+++ +g  +
  MMETSP1137-20121227|3482_1  35 IETELSFSRDALAAIDSSLLVAYAISQLLLGKTVSFLGQKTPIILAFFIaGAATACVGLMDSSLAM-SFFWGTSGFAAAVASPLFCIILADIMPPAIRATAIGAWSSCQQLGGIAANIVSAAVLANYSWRAVFYTSGAIVSMFAPILLLVLPATERAGSSTvakdkeqAQNGKPSSDTSILQVPGAISVAVSYTLVKMSRYCLMFWLPYFLARHLGMSAAAAGTVSAALDLGGGLGSILGGIACDRFYNGKSLAISFHLALATSLgLLAWTgASAALSPPPMALHVAAILLVGFCI 329
                 6677888888888888999*******************9966665555415666555555555433.23334578999999999999*******99999999********************************999988888777788888887655333322221123333344456666667777777777777778888888888888888888888888877777777777777777777777777777776555555542222230333344445555555555555444 PP

  == domain 2    score: 2.5 bits;  conditional E-value: 0.036
   TIGR00710 148 iGgyvlvflsWhaiFavlsligillval 175
                 + + ++ +++W  +F  ls +++l+++ 
  MMETSP1137-20121227|3482_1 378 LTSKIIDHFGWNGLFLSLSGAMLLASLS 405
                 556799****************999986 PP

>> TIGR00891  2A0112: MFS transporter, sialate:H+ symporter (SHS) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0  11.3   0.00015     0.068      13     314 ..      10     293 ..       2     312 .. 0.82
   2 ?   -1.3   0.1       0.4   1.8e+02     136     172 ..     359     393 ..     320     411 .. 0.81

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 0.00015
   TIGR00891  13 afsaaylgylldafdfflvalvlaevaeefdrttkdvafllsaalivrsvGalllGlwaDrvgrrlplvtsvvlfsvatllcafaptyekllivrlviGigmgGeyGlaaalaiedvPkklrsvlsGllisgyavGfvlaavvysvvvnvlgdsWriLffls.ilpiilalflrkrvpeaevwkeklkakklvktrvdkvlggealvkaivktkavamkrsvqkrwllfvyLvvllvaanylshaiqdllPtyLkadlglskdtvavivvvsniGaivGglvfGtlsevlgrrkalvialllg 314
                  f  +y++y    f+    a+v   +++e   ++  +a   s  l+   +  lllG      g++ p++ + ++  +at +++  ++   +       G + +    l   +  + +P   r+ + G   s   +G + a +v  +v   +   Wr++f+ s  +  ++a +l + +p +e      ++   v  + ++++ g++   + + +   a+        +   y +v +    ++ +     lP +L  +lg+s  ++ ++    ++G  +G++++G   +++   k+l i+  l+
  MMETSP1137-20121227|3482_1  10 IFGTTYFAYAGIYFARKPFAVVKGTIETELSFSRDALAAIDSSLLVAYAISQLLLGKTVSFLGQKTPIILAFFIAGAATACVGLMDSSLAMSFFWGTSGFAAAVASPLFCIILADIMPPAIRATAIGAWSSCQQLGGIAANIVSAAVLANYS--WRAVFYTSgAIVSMFAPILLLVLPATER-----AGSSTVAKDKEQAQNGKPSSDTSILQVPGAIS-------VAVSYTLVKMSRYCLMFW-----LPYFLARHLGMSAAAAGTVSAALDLGGGLGSILGGIACDRFYNGKSLAISFHLA 293
                 68899****999999999*************************************************************************9999999****9999999999999*****************************99987666..*****98636778888888888888874.....55566666667777777777755544444433.......334455666666666666.....888998899999999988888888888888888888888887777777776655 PP

  == domain 2    score: -1.3 bits;  conditional E-value: 0.4
   TIGR00891 136 vlsGllisgyavGfvlaavvysvvvnvlgdsWriLff 172
                  +sG++    +vG+v   v+ s ++  +g  W  Lf 
  MMETSP1137-20121227|3482_1 359 TISGVINGCGSVGAVAQGVLTSKIIDHFG--WNGLFL 393
                 67898888899999999999999999988..999884 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (429 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       143  (0.034861); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         9  (0.00219405); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.54u 0.14s 00:00:00.68 Elapsed: 00:00:00.63
# Mc/sec: 898.78
//
Query:       MMETSP1137-20121227|3483_1  [L=342]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.9e-22   76.4   0.0      6e-12   43.3   0.0    2.3  2  TIGR00744 ROK_glcA_fam: ROK family protein (putative glucokinase)


Domain annotation for each model (and alignments):
>> TIGR00744  ROK_glcA_fam: ROK family protein (putative glucokinase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.3   0.0   1.5e-15     6e-12       7     162 ..       2     153 ..       1     190 [. 0.82
   2 !   30.9   0.0   8.6e-12   3.5e-08     231     310 ..     207     294 ..     202     300 .. 0.72

  Alignments for each domain:
  == domain 1    score: 43.3 bits;  conditional E-value: 1.5e-15
   TIGR00744   7 Gttiklgv.vdeegnilskwkvptdttdetivvaiakivdskldeldksdheivaiGiGapGpvnl.....eagevyeavnldWkqealkekleaevglPvvvendanvaalGekk..kGaGdGakdvilitlGtGlGGGiiangeilrGhnGagaeiGhirvv 162
                 Gtt kl++ vde  ni ++ ++pt t +et    +ak+ +     l    ++  a+G+   Gpv+l     + g + +++  +W+++ +   l+   ++P   + d n+ a+ e++  k +G+       it+GtG+G G+++n+  ++G      e Ghi+v 
  MMETSP1137-20121227|3483_1   2 GTTFKLALaVDEPSNIVEQTEIPTTTPKET----LAKVCEW----LG--TKHYDALGVACFGPVDLhpeskAYGYITTTPKPNWQNTDVLGPLRRVRDVPFGFDTDVNAPAYAEYEyaKRSGKMLSSCAYITVGTGIGVGLVVNDLPVHGLM--HPEGGHICVP 153
                 99***99768**************888876....5666665....22..23456889999999997222224577888999*******************************987522678888999***********************97..5688999984 PP

  == domain 2    score: 30.9 bits;  conditional E-value: 8.6e-12
   TIGR00744 231 vveevakylglvladlasllnPskivlGGGlsdaGelllekikkeykkll........ftrarqaadiv.aaqlGndaGvvGaadlakt 310
                 v +  a+ylg+++a+l  ++ P++ivlGGG+ +   l + +i+ e +k l        +++++  ad++ ++  Gn+aG+vGa +la++
  MMETSP1137-20121227|3483_1 207 VWDAAAHYLGALCANLVLMVSPERIVLGGGIMQRVSLFR-RIRAEAQKQLngylqlpeLATSEGIADLIvTSVWGNNAGIVGALTLAEK 294
                 56788***************************9999865.3444443332111121124455677886515667*********999974 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (342 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        67  (0.0163335); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.27u 0.12s 00:00:00.39 Elapsed: 00:00:00.39
# Mc/sec: 1157.44
//
Query:       MMETSP1137-20121227|3484_1  [L=698]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.3e-08   31.4   0.0    3.3e-08   31.4   0.0    2.3  3  TIGR01385 TFSII: transcription elongation factor S-II


Domain annotation for each model (and alignments):
>> TIGR01385  TFSII: transcription elongation factor S-II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.4   0.0   8.1e-12   3.3e-08      18     107 ..      73     164 ..      62     217 .. 0.77
   2 ?   -8.0   5.0         1   4.1e+03      96     109 ..     468     480 ..     444     576 .. 0.39
   3 ?   -3.0   2.1      0.24     1e+03      71     122 ..     540     584 ..     517     621 .. 0.49

  Alignments for each domain:
  == domain 1    score: 31.4 bits;  conditional E-value: 8.1e-12
   TIGR01385  18 knveqvidilkqLkklpvteellketkvGlkvnklrkkpnedikklakeliksWKkvvike..eksenpagakeeklqrkesvksakaekke 107
                   +e+ + ilk L +lpv +e l++  vG+ vnklrk+    +++ +  l+++WK++      + +  +a+a+    +r +s     ae+k 
  MMETSP1137-20121227|3484_1  73 LTDEETLXILKLLRHLPVDVESLQASGVGKTVNKLRKRECSAVQQASIALLQDWKAMACATsgSSPAASAPAPLPACKRAQSPGAFDAEAKR 164
                 45788999************************************************988773344445556666666666666666655554 PP

  == domain 2    score: -8.0 bits;  conditional E-value: 1
   TIGR01385  96 esvksakaekkeqa 109
                 +  +++++++++  
  MMETSP1137-20121227|3484_1 468 QQQQQQQPPQQQ-Q 480
                 222222222221.1 PP

  == domain 3    score: -3.0 bits;  conditional E-value: 0.24
   TIGR01385  71 WKkvvike.......eksenpagakeeklqrkesvksakaekkeqavkieqkKdsssss 122
                 W  +++k+       e++++    +++  +++ sv+++++++             ++ s
  MMETSP1137-20121227|3484_1 540 WPSQLQKQaqaqlelERQQHRH--QQQDEEVQRSVQQVQPQRM------------QPMS 584
                 4444444333333222222222..3333333334444433333............2222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (698 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       308  (0.0750853); expected 82.0 (0.02)
Passed bias filter:                      112  (0.0273038); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.60u 0.17s 00:00:00.77 Elapsed: 00:00:00.71
# Mc/sec: 1297.58
//
Query:       MMETSP1137-20121227|3485_1  [L=122]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (122 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        68  (0.0165773); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.12s 00:00:00.28 Elapsed: 00:00:00.27
# Mc/sec: 596.40
//
Query:       MMETSP1137-20121227|3487_1  [L=322]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (322 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       236  (0.0575329); expected 82.0 (0.02)
Passed bias filter:                      129  (0.0314481); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.13s 00:00:00.41 Elapsed: 00:00:00.43
# Mc/sec: 988.38
//
Query:       MMETSP1137-20121227|3488_1  [L=106]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (106 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        88  (0.0214529); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.16s 00:00:00.32 Elapsed: 00:00:00.40
# Mc/sec: 349.77
//
Query:       MMETSP1137-20121227|3489_1  [L=68]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (68 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       219  (0.0533886); expected 82.0 (0.02)
Passed bias filter:                      179  (0.0436373); expected 82.0 (0.02)
Passed Vit filter:                        18  (0.0043881); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.27
# Mc/sec: 332.42
//
Query:       MMETSP1137-20121227|3490_1  [L=65]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (65 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        32  (0.00780107); expected 82.0 (0.02)
Passed bias filter:                       31  (0.00755729); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.14s 00:00:00.26 Elapsed: 00:00:00.25
# Mc/sec: 343.17
//
Query:       MMETSP1137-20121227|3492_1  [L=380]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (380 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        73  (0.0177962); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.16s 00:00:00.44 Elapsed: 00:00:00.38
# Mc/sec: 1319.89
//
Query:       MMETSP1137-20121227|3493_1  [L=520]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (520 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        93  (0.0226719); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.16s 00:00:00.53 Elapsed: 00:00:00.49
# Mc/sec: 1400.70
//
Query:       MMETSP1137-20121227|3494_1  [L=152]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (152 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       337  (0.082155); expected 82.0 (0.02)
Passed bias filter:                      107  (0.0260848); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.17s 00:00:00.40 Elapsed: 00:00:00.44
# Mc/sec: 455.96
//
Query:       MMETSP1137-20121227|3495_1  [L=502]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   4.1e-153  508.9   0.6   4.9e-153  508.6   0.4    1.0  1  TIGR00484 EF-G: translation elongation factor G
    7.4e-53  177.5   0.0    4.1e-26   89.1   0.0    2.0  2  TIGR00490 aEF-2: translation elongation factor aEF-2
    3.8e-24   82.7   0.0    3.9e-14   49.6   0.0    2.6  2  TIGR01394 TypA_BipA: GTP-binding protein TypA/BipA
    3.3e-19   66.5   0.0    3.5e-12   43.3   0.0    2.1  2  TIGR01393 lepA: GTP-binding protein LepA
    2.5e-15   53.7   0.0    3.7e-15   53.2   0.0    1.2  1  TIGR00503 prfC: peptide chain release factor 3


Domain annotation for each model (and alignments):
>> TIGR00484  EF-G: translation elongation factor G
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  508.6   0.4    6e-156  4.9e-153     190     689 ..       3     491 ..       1     493 [. 0.96

  Alignments for each domain:
  == domain 1    score: 508.6 bits;  conditional E-value: 6e-156
   TIGR00484 190 kgekaeekeiPedlkeeakelreklveavaeldeelmekyleGeeltieeikkairkgvlalelvpvlvGsafknkGvqllldavvdylPsPvdvkaikaidedt.ekeielkasddepfvalafkvatdpfvgkltfvrvysGvlksGsevlnsrkekkervgrlvkmhankreeieevraGdiaaliGlkdtttGdtlcdekaevilesmefpePvislavePktkadqekmgialgklaeedPtfkvftdeesgqtiiaGmGelhldiivdrlkrefkvevnvGkPqvayretirkkaevegkyakqsGGrGqyGhvvielePlee...gkgyefvneikGGviPreyipavdkGleealesGvlaGyPvvdikvtlfdGsyhdvdsselafklaaslalkeavkkakPvllePimkvevevPeeylGdvlGdlsrrrgliegseeresvkvvkaevPlsemfGyatdlrsatqGraeysmeflkyaevPksvaeeiiekk 689
                 kge++ + ++P ++ e ++++r +++e++a++dee+ e yl+ e  ++  +k+a+r++++al ++pv++G+afknkG            P+P +v++  a+d  + ek++ l  ++d+pfv+lafk+++++f+ +lt++r+y+G + +G++++    +kk rv +lv+mh+n+ ee++  +aGdi+a++G+++++ G t++d k++++++sm +p+Pv+sla+ Pk+k+   ++ +al+++++edPtf++++d+es++tii+GmGelhldi+v+rlkre++ e  +G+P+va+re+  k+a++ ++++kqsGG+GqyG+v   +eP +e     +yef n+++G  iP e++ a++kG++ea ++G++aG  v+ ++v l dG  h vds+el+f+laa  a+k+a+++ak  +leP+m  ev+vP+e++G  +G +s+r+g+i+ ++  + +++++  vPl+ mfG+++dlrs tqG++eysme++ +  + ++  ee+i+k 
  MMETSP1137-20121227|3495_1   3 KGEEMVVSPVPPEMEELVRQKRMEMLEKLADVDEEIAEYYLNEEVPPVPVLKAAVRRQTIALTFCPVFMGAAFKNKGX----------APAPENVSN-YALDLSNdEKQVALIPDKDKPFVGLAFKLEEGRFG-QLTYMRIYQGSVSRGDTIMSMADTKKVRVPKLVRMHSNDMEEVDGGQAGDIIAFFGVDCAS-GTTFTDGKVKYSMTSMYVPDPVVSLALVPKQKNP-PNLFKALSRFTKEDPTFRMHVDDESNETIISGMGELHLDIYVERLKREYNTECTTGAPKVAFREAPSKRARFSYTHKKQSGGAGQYGKVEGYIEPIDEtpgVGSYEFENQLSGNNIPPEFVGAINKGFQEACREGPIAGQQVMGVRVVLKDGMAHMVDSNELSFNLAAKGAFKQAMHAAKGLVLEPLMTCEVSVPSEFQGSAVGLISQRKGTITRMDGTD-FVTIDCDVPLEAMFGFSSDLRSLTQGKGEYSMEYKMHVPCTREKQEELIKKY 491
                 7889999***********************************99999******************************6..........5*******9.56665554999***********************6.**********************************************************999.******************************9975.67999********************************************************************************************9775457**************************************************************************************************************998776.5689******************************998888888888888875 PP

>> TIGR00490  aEF-2: translation elongation factor aEF-2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.1   0.0     5e-29   4.1e-26     272     470 ..      93     286 ..      86     317 .. 0.89
   2 !   86.4   0.0   3.2e-28   2.6e-25     559     718 ..     342     498 ..     328     500 .. 0.94

  Alignments for each domain:
  == domain 1    score: 89.1 bits;  conditional E-value: 5e-29
   TIGR00490 272 dlnseagkamlncdpegplavvitkivvdkhagevavgrlysgaikkgsevylvdskakariqqvgvymgpervevdeipagnivavvglkeavageticstdkkikafeaikhisepvvtvaieakntkdlpklievlrkvakedptvkveineetgehlisgmgelhleiivkkirekagvevetsepivvyretvt 470
                 dl  ++ +  l  d + p+ ++  k+  + + g+++  r+y g++ +g+ ++ + + +k r+ ++  +   +  evd   ag+i+a  g+   ++g t   td k+k   +  ++ +pvv++a+  k+ k+ p l + l + +kedpt ++++++e+ e +isgmgelhl+i v++ +++++ e  t+ p v +re+ +
  MMETSP1137-20121227|3495_1  93 DLSNDEKQVALIPDKDKPFVGLAFKLE-EGRFGQLTYMRIYQGSVSRGDTIMSMADTKKVRVPKLVRMHSNDMEEVDGGQAGDIIAFFGVD-CASGTT--FTDGKVKYSMTSMYVPDPVVSLALVPKQ-KNPPNLFKALSRFTKEDPTFRMHVDDESNETIISGMGELHLDIYVERLKREYNTECTTGAPKVAFREAPS 286
                 777777777888888888888888875.7789*******************************998888888889**************96.556888..46677777777789**********9885.789****************************************************************865 PP

  == domain 2    score: 86.4 bits;  conditional E-value: 3.2e-28
   TIGR00490 559 lilegfkeamrngpvakekvmgvkvklvdaklhedavhrgpaqvipavrkgifaallqaepvlleplqkvfinvpqdlmgaatreiqnrrgqilemkqegdmvtikakvpvaemfgfagairgategralwstefagfekvprelqeelvkevrkrkglk 718
                  i +gf+ea r+gp+a ++vmgv+v l d   h   v         a++ +  +a+  a+  +lepl    ++vp ++ g+a+  i++r+g i  m+   d+vti + vp++ mfgf+ ++r+ t+g+  +s+e+  +    re qeel+k+ +++ g k
  MMETSP1137-20121227|3495_1 342 AINKGFQEACREGPIAGQQVMGVRVVLKDGMAHM--VDSNELSFNLAAKGAFKQAMHAAKGLVLEPLMTCEVSVPSEFQGSAVGLISQRKGTITRMD-GTDFVTIDCDVPLEAMFGFSSDLRSLTQGKGEYSMEYKMHVPCTREKQEELIKKYQEKAGTK 498
                 5779***************************995..777788888899***********************************************97.57******************************************************999977 PP

>> TIGR01394  TypA_BipA: GTP-binding protein TypA/BipA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.6   0.0   4.8e-17   3.9e-14     196     391 ..     106     287 ..      99     291 .. 0.86
   2 !   29.8   0.0   4.6e-11   3.8e-08     386     472 ..     396     480 ..     387     490 .. 0.90

  Alignments for each domain:
  == domain 1    score: 49.6 bits;  conditional E-value: 4.8e-17
   TIGR01394 196 dkdeplqllvttldydeylGriaigrverGkvkkgqqvallkkdgkiekariskllafeglerveideaeaGdivavaGledieigetiadaeeaealpllkvdePtlsmtfsvndsPlaGkegkkvtsrkirdrLereletnvalrveeteeadkfevsGrGeLhlsiLietmrre.GfelsvskPkvivkeidgk 391
                 dkd+p+  l  +l+  ++ G+++  r+++G+v +g++++ +     ++k+r+ kl+ +++ +  e+d  +aGdi+a  G++ +  g t +d +++ ++ ++ v +P +s+ +   +              ++ + L+r  +++ ++r++  +e+++  +sG GeLhl i +e ++re   e + + Pkv  +e   k
  MMETSP1137-20121227|3495_1 106 DKDKPFVGLAFKLEEGRF-GQLTYMRIYQGSVSRGDTIMSMAD---TKKVRVPKLVRMHSNDMEEVDGGQAGDIIAFFGVD-CASGTTFTDGKVKYSMTSMYVPDPVVSLALVPKQ----------KNPPNLFKALSRFTKEDPTFRMHVDDESNETIISGMGELHLDIYVERLKREyNTECTTGAPKVAFREAPSK 287
                 78999999999**99987.*******************99976...56789****************************96.566*************************986543..........2334556666777777777888888888999********************44699*******99987655 PP

  == domain 2    score: 29.8 bits;  conditional E-value: 4.6e-11
   TIGR01394 386 keidgkklePieeltidvpeefvgavieklgkrkgelkdmeskgsGrvrlefkiPsrgliGfrtefltatrGegilnrvfdeyeplk 472
                 +  +g  leP+ +  + vp ef+g+ +  +++rkg ++ m+ +    v ++  +P  +++Gf++++ + t+G+g  +  ++ + p +
  MMETSP1137-20121227|3495_1 396 HAAKGLVLEPLMTCEVSVPSEFQGSAVGLISQRKGTITRMDGTDF--VTIDCDVPLEAMFGFSSDLRSLTQGKGEYSMEYKMHVPCT 480
                 6678999*********************************87665..99*************************9999998888765 PP

>> TIGR01393  lepA: GTP-binding protein LepA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.3   0.0   4.2e-15   3.5e-12     204     376 ..     124     286 ..     104     314 .. 0.82
   2 !   21.2   0.0   2.1e-08   1.7e-05     397     473 ..     401     476 ..     375     491 .. 0.84

  Alignments for each domain:
  == domain 1    score: 43.3 bits;  conditional E-value: 4.2e-15
   TIGR01393 204 GvvvyvrvveGkikkgdkikllstgkeyeveevgvltpklvkeeelkaGevGyliagikdvkdvkvGdtitsvkkpakealpGfkkvkpvvfaglyPidsedyeelrdaleklklndasltyek..esskalGfGfrcGflGllhleviqerlerefdldliataPsvvykvklk 376
                 G ++y+r+++G++++gd+i+ ++  k+ +v ++  ++   ++ ee+  G+ G +ia      d   G t t+   ++k +++      pvv  +l P ++ +  +l +al +++ +d ++ ++   es +++  G     +G lhl++  erl+re++ +  + aP+v ++    
  MMETSP1137-20121227|3495_1 124 GQLTYMRIYQGSVSRGDTIMSMADTKKVRVPKLVRMHS--NDMEEVDGGQAGDIIAFFG--VDCASGTTFTDG--KVKYSMTSMYVPDPVVSLALVPKQK-NPPNLFKALSRFTKEDPTFRMHVddESNETIISG-----MGELHLDIYVERLKREYNTECTTGAPKVAFREAPS 286
                 7899**************************99876655..4556699*****9999764..477778888765..567788888999**********875.5689999**********98766510455555444.....79**************************9986655 PP

  == domain 2    score: 21.2 bits;  conditional E-value: 2.1e-08
   TIGR01393 397 eveePyvkatiivpeeylgailelcqekrgvlkkleyldkervelvyelPlaeivldffdklksiskGya..sldyeli 473
                  v eP +++++ vp+e+ g+ + l+ +++g++++++  d   v++  ++Pl e ++ f   l+s+++G +  s++y+++
  MMETSP1137-20121227|3495_1 401 LVLEPLMTCEVSVPSEFQGSAVGLISQRKGTITRMDGTD--FVTIDCDVPL-EAMFGFSSDLRSLTQGKGeySMEYKMH 476
                 589********************************9888..7********9.789**********98765227888764 PP

>> TIGR00503  prfC: peptide chain release factor 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.2   0.0   4.5e-18   3.7e-15     248     461 ..      65     274 ..      32     285 .. 0.88

  Alignments for each domain:
  == domain 1    score: 53.2 bits;  conditional E-value: 4.5e-18
   TIGR00503 248 eltpvffGtalgnfGvdllldallqyaakpeardsdtrtveaaeekfsGfvfklqanmdpkhrdrvaflrvvsGkyekdmklkhvrtgkdvvlsdalkllagdresveeayaGdiiGlhnhGtiqiGdtvtqGeklkftgipnfapelfrrlrlkdplkq.kqllkGlvelseeGavqvlrslden.dlivaavGvlqfdvvvarlkeeynveavy 461
                  + pvf+G+a++n G     + + +ya    + + +   +   ++ f G+ fkl+         +++++r+  G   ++  +  +  +k+v++ +  ++ ++d e+v+   aGdii +        G t+t+G k+k++    + p+    l l    k+  +l k l+++++e     ++  de+ + i++ +G l +d+ v rlk eyn e+  
  MMETSP1137-20121227|3495_1  65 TFCPVFMGAAFKNKGXAPAPENVSNYALDLSNDEKQVALIPDKDKPFVGLAFKLEEG----RFGQLTYMRIYQGSVSRGDTIMSMADTKKVRVPKLVRMHSNDMEEVDGGQAGDIIAFFGVD-CASGTTFTDG-KVKYSMTSMYVPDPVVSLALVPKQKNpPNLFKALSRFTKEDPTFRMHVDDESnETIISGMGELHLDIYVERLKREYNTECTT 274
                 578*************************999999999999999999*******9754....56789**************************************************998765.4679999999.69***********9999998755554259*******988876655555554449************************9875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (502 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       103  (0.0251097); expected 82.0 (0.02)
Passed bias filter:                       98  (0.0238908); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.46u 0.19s 00:00:00.65 Elapsed: 00:00:00.78
# Mc/sec: 849.47
//
Query:       MMETSP1137-20121227|3496_1  [L=1064]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1064 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       235  (0.0572891); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.63u 0.14s 00:00:00.77 Elapsed: 00:00:00.48
# Mc/sec: 2925.76
//
Query:       MMETSP1137-20121227|3497_1  [L=213]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (213 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        53  (0.0129205); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.17s 00:00:00.38 Elapsed: 00:00:00.30
# Mc/sec: 937.12
//
Query:       MMETSP1137-20121227|3498_1  [L=238]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (238 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        26  (0.00633837); expected 82.0 (0.02)
Passed bias filter:                       26  (0.00633837); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.14s 00:00:00.34 Elapsed: 00:00:00.31
# Mc/sec: 1013.34
//
Query:       MMETSP1137-20121227|3499_1  [L=351]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0021   15.0  16.6      0.045   10.7   3.1    2.1  2  TIGR00820 zip: ZIP zinc/iron transport family


Domain annotation for each model (and alignments):
>> TIGR00820  zip: ZIP zinc/iron transport family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.7   3.1   1.1e-05     0.045     230     323 ..      45     140 ..      37     141 .. 0.81
   2 !   10.3   2.9   1.4e-05     0.059     179     309 ..     212     336 ..     167     349 .. 0.75

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 1.1e-05
   TIGR00820 230 kvvilavffavttPlgiaiG.lavss.sydeespkAliveGlLnalsaGiLiYmaLvdll..AadFlskklqsnlrlqllayialllGaglmsllakW 323
                 ++vi av+ ++ + l+ ++G l+v++ +  ++ pkA ++   L a+s G+++Y++ ++++  A+d ++ k +s+     ++ ++  +G  ++ +l  W
  MMETSP1137-20121227|3499_1  45 TNVITAVLVSLGAGLATGVGgLVVFApQILSSVPKATVLAVAL-AISGGVMLYVSFIEIFvkAQDAIQTKYTSDAAAAGITTVCF-FGGMIICVLLEW 140
                 4678889999999999999647777778999999*99987555.9*************876689***********9999999985.566666666666 PP

  == domain 2    score: 10.3 bits;  conditional E-value: 1.4e-05
   TIGR00820 179 iivHsvviGls..lGasqskdtikaLiaaLsFHqlFeGlglGgcisqaefkakkvvilavffavttPlgiaiGlavss.sydeespkAliveGlLnalsaGiLiYmaLvdllAadFlskklqsnlrlqllayia 309
                 i +H    Gl+  l +++++    aL  a+  H + eG+ +   i  a   ++k ++ +v+ ++t P+g  +G a+ +  +++       v G++ ++  G+++++ L +ll +     + q+     ++ay+ 
  MMETSP1137-20121227|3499_1 212 IALHNFPEGLAtfLATVSDPQIGLALGVAIAVHNIPEGVCVAMPIFYATGSKTKGFMWSVLSGITEPIGGIVGYAILQpVFTD------FVFGVIFSMVGGMMVFIVLHELLPTAHRYLPTQGA---MVTAYVI 336
                 5555555555433556666666778999************************************************9867766......57899999***********9999775444444333...3444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (351 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       228  (0.0555826); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.27u 0.14s 00:00:00.41 Elapsed: 00:00:00.41
# Mc/sec: 1129.96
//
Query:       MMETSP1137-20121227|3500_1  [L=354]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (354 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        52  (0.0126767); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.15s 00:00:00.40 Elapsed: 00:00:00.37
# Mc/sec: 1262.81
//
Query:       MMETSP1137-20121227|3501_1  [L=120]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (120 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        43  (0.0104827); expected 82.0 (0.02)
Passed bias filter:                       34  (0.00828864); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.17s 00:00:00.35 Elapsed: 00:00:00.60
# Mc/sec: 263.98
//
Query:       MMETSP1137-20121227|3502_1  [L=131]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00034   17.4   0.1     0.0004   17.2   0.0    1.0  1  TIGR00115 tig: trigger factor
     0.0011   16.2   0.0     0.0013   16.0   0.0    1.1  1  TIGR03516 ppisom_GldI: peptidyl-prolyl isomerase, gliding motility-associated
  ------ inclusion threshold ------
        0.1   10.3   1.8       0.17    9.6   1.3    1.4  1  TIGR04057 SusC_RagA_signa: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region


Domain annotation for each model (and alignments):
>> TIGR00115  tig: trigger factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.0   2.9e-07    0.0004     151     207 ..      42     101 ..      28     113 .. 0.88

  Alignments for each domain:
  == domain 1    score: 17.2 bits;  conditional E-value: 2.9e-07
   TIGR00115 151 kgDivtidfeg.kvdGeafeggka..edfelelgsgqfipgfeeqlvGmkaGeekeikvt 207
                 kg  v + ++g    G++f++     + f+++lg gq+i+  +e++  m++Ge +++++t
  MMETSP1137-20121227|3502_1  42 KGQSVEVHYTGtLTSGKKFDSSRDrgQTFKFKLGVGQVIKCWDEGVAQMSKGERATLDCT 101
                 78889999***666******98764489*****************************998 PP

>> TIGR03516  ppisom_GldI: peptidyl-prolyl isomerase, gliding motility-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0   9.2e-07    0.0013      84     174 ..      38     129 ..      28     131 .] 0.89

  Alignments for each domain:
  == domain 1    score: 16.0 bits;  conditional E-value: 9.2e-07
   TIGR03516  84 ktpetgDlvsfeyeikaldgdviyskeelgpk.tykvdqedlisGlrdglklmkegeevtfllPsykayGyyGdedkigsnlpikstvtlln 174
                 + p +g  v+ +y+    +g+   s  + g+  ++k+   ++i+   +g+  m +ge +t+      ayG  G    i +n  +k +v l  
  MMETSP1137-20121227|3502_1  38 NFPSKGQSVEVHYTGTLTSGKKFDSSRDRGQTfKFKLGVGQVIKCWDEGVAQMSKGERATLDCTPDVAYGARGAGGVIPPNADLKFDVELFG 129
                 5689999999999999999999999999986525678889***********************************************99865 PP

>> TIGR04057  SusC_RagA_signa: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   1.3   0.00013      0.17      17      26 ..     106     115 ..     104     116 .. 0.94

  Alignments for each domain:
  == domain 1    score: 9.6 bits;  conditional E-value: 0.00013
   TIGR04057  17 YGsrgANGVI 26 
                 YG+rgA GVI
  MMETSP1137-20121227|3502_1 106 YGARGAGGVI 115
                 *********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (131 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       120  (0.029254); expected 82.0 (0.02)
Passed bias filter:                      113  (0.0275475); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.16u 0.18s 00:00:00.34 Elapsed: 00:00:00.36
# Mc/sec: 480.29
//
Query:       MMETSP1137-20121227|3504_1  [L=362]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0063   13.8   0.0       0.24    8.6   0.0    2.1  2  TIGR02850 spore_sigG: RNA polymerase sigma-G factor


Domain annotation for each model (and alignments):
>> TIGR02850  spore_sigG: RNA polymerase sigma-G factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    3.0   0.0    0.0031        13     120     181 ..     116     176 ..     111     184 .. 0.84
   2 !    8.6   0.0   5.9e-05      0.24      97     169 ..     224     295 ..     221     301 .. 0.86

  Alignments for each domain:
  == domain 1    score: 3.0 bits;  conditional E-value: 0.0031
   TIGR02850 120 ykalqvrdklvskkskeptvseiakelevpkeevvfaldaiqdpvslfepiyndggdpiyvm 181
                 y a    d+l ++  k+ t+ + + + +++ e  +++lda  + +s+ e   +++g +  vm
  MMETSP1137-20121227|3504_1 116 YTAKHFIDHLSGELPKDHTAPDFTSKAQLAFETALMSLDAELKGLSIVESGQDQSG-STSVM 176
                 788888999*************************************9998655554.34455 PP

  == domain 2    score: 8.6 bits;  conditional E-value: 5.9e-05
   TIGR02850  97 geirrylrdnnpirvsrslrdiaykalqvrdklvskkskeptvseiakelevpkee..vvfaldaiqdpvslfep 169
                 g + ++ r n  + vsr+l d  yk     d +v++++   +  e+  e   p+e+  +v+a d i d +s  e 
  MMETSP1137-20121227|3504_1 224 GSMVKFNRVNGDLAVSRALGDFVYKR---CDSVVAEEQAVTAFPEVIIEQRKPEEDefIVLACDGIWDVMSSQEV 295
                 667789999***************97...58999999999999999988888887767999*****999987765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (362 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        76  (0.0185275); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.26u 0.15s 00:00:00.41 Elapsed: 00:00:00.47
# Mc/sec: 1016.60
//
Query:       MMETSP1137-20121227|3505_1  [L=322]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.2e-09   34.4   9.0    0.00019   17.3   3.2    3.0  3  TIGR02917 PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein
    7.5e-08   30.0   4.2    6.7e-07   27.0   0.1    3.2  3  TIGR02552 LcrH_SycD: type III secretion low calcium response chaperone LcrH/SycD
    0.00011   19.6   7.6      0.014   12.8   0.0    4.0  4  TIGR02521 type_IV_pilW: type IV pilus biogenesis/stability protein PilW
     0.0016   14.5   6.9     0.0043   13.1   0.2    2.6  3  TIGR03939 PGA_TPR_OMP: poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA


Domain annotation for each model (and alignments):
>> TIGR02917  PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.1   2.5e-07   0.00026     346     408 ..      24      85 ..      13     107 .. 0.78
   2 !    1.8   0.1    0.0086       8.8     466     495 ..     174     203 ..     163     217 .. 0.66
   3 !   17.3   3.2   1.8e-07   0.00019      87     157 ..     212     281 ..     179     286 .. 0.82

  Alignments for each domain:
  == domain 1    score: 16.8 bits;  conditional E-value: 2.5e-07
   TIGR02917 346 deaiatlspalekdsddsallsllGeayLekgdfekAaeylakaseldPe.naaaktklgiskL 408
                 ++ai    +a + +++d+all+  Gea+L++g++e A+  l++  el+P+  a+ ++ lg+  L
  MMETSP1137-20121227|3505_1  24 ENAIELYRRAVQIQPSDPALLAEFGEAALQAGQVEDAKVALQRSIELSPDgTASRYMYLGQ--L 85 
                 4677777888888899999999999999999999999999999999999734666666665..4 PP

  == domain 2    score: 1.8 bits;  conditional E-value: 0.0086
   TIGR02917 466 slynllgaiylgkkdlakAreafekALkie 495
                 + y+++++  l ++ ++ A++ + kAL+i 
  MMETSP1137-20121227|3505_1 174 EPYQTMASLRLSQQRPEDAEALLAKALSIT 203
                 455555555555555555555555555553 PP

  == domain 3    score: 17.3 bits;  conditional E-value: 1.8e-07
   TIGR02917  87 yskeqvlplLarayllqgkfqkvldelekksslddeeaaellalrglAaLglgeleeAqksleqAlaiapk 157
                  ++ +++  L+++++  g   ++ld+l++   l+d+e++el  l+  AaL++gele Aq++leqAl++a++
  MMETSP1137-20121227|3505_1 212 QPSLEMRTALSKLLMEVGMSAEALDLLQELR-LEDDESLELWYLVVCAALQSGELEIAQAELEQALQFAQS 281
                 45556778899****************9999.9999*******************************9987 PP

>> TIGR02552  LcrH_SycD: type III secretion low calcium response chaperone LcrH/SycD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.0   0.1   6.5e-10   6.7e-07      60     119 ..      15      74 ..       9      91 .. 0.90
   2 ?    1.7   0.0      0.04        41      84     117 ..     171     204 ..     149     224 .. 0.79
   3 ?    1.0   0.1     0.068        69      82     119 ..     244     282 ..     217     290 .. 0.68

  Alignments for each domain:
  == domain 1    score: 27.0 bits;  conditional E-value: 6.5e-10
   TIGR02552  60 aclqalkeyeeAiaaYalaaaldlddprpvyhaaecllalgekeeAlkaLklaieiaeek 119
                  ++ ++ e e+Ai+ Y +a++++++dp+ + + +e  l+ g+ e+A+ aL++ ie++ + 
  MMETSP1137-20121227|3505_1  15 RACTEKLERENAIELYRRAVQIQPSDPALLAEFGEAALQAGQVEDAKVALQRSIELSPDG 74 
                 577788899**********************************************99864 PP

  == domain 2    score: 1.7 bits;  conditional E-value: 0.04
   TIGR02552  84 ddprpvyhaaecllalgekeeAlkaLklaieiae 117
                   p+p+   a   l  +++e+A++ L+ a+ i e
  MMETSP1137-20121227|3505_1 171 TLPEPYQTMASLRLSQQRPEDAEALLAKALSITE 204
                 458999999999999999*******999999877 PP

  == domain 3    score: 1.0 bits;  conditional E-value: 0.068
   TIGR02552  82 dlddprpvyhaaecl.lalgekeeAlkaLklaieiaeek 119
                 + d+   ++++ +c  l+ ge e A++ L+ a++ a+++
  MMETSP1137-20121227|3505_1 244 EDDESLELWYLVVCAaLQSGELEIAQAELEQALQFAQSD 282
                 444555566777774367788888888888888877765 PP

>> TIGR02521  type_IV_pilW: type IV pilus biogenesis/stability protein PilW
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.8   0.0   1.3e-05     0.014      80     194 ..      22      66 ..       6      71 .. 0.54
   2 !    6.2   0.0    0.0014       1.4      42      93 ..      52     100 ..      46     109 .. 0.70
   3 ?    2.3   0.3     0.022        23     169     197 ..     173     201 ..     121     239 .. 0.69
   4 !    4.4   0.2    0.0048       4.9      42      65 ..     260     283 ..     256     289 .. 0.86

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 1.3e-05
   TIGR02521  80 elekAeesfrkAltlkpnngdvlNNYGtFLcqqkkyeeAeqqfeaAiedpkYeqparsyeNaglcalkagdtekaekyltralkidpkrpesllelaelklkkgqyaeAraller 194
                 e e+A                                                                       +  +ra++i+p+ p  l e  e  l++gq+ +A+ +l+r
  MMETSP1137-20121227|3505_1  22 ERENAI----------------------------------------------------------------------ELYRRAVQIQPSDPALLAEFGEAALQAGQVEDAKVALQR 66 
                 444455......................................................................555555555555555555555555555555555555554 PP

  == domain 2    score: 6.2 bits;  conditional E-value: 0.0014
   TIGR02521  42 leqgdlekAkenlekAleldpkdadanlalAlyyqqlgelekAeesfrkAlt 93 
                 l++g++e Ak +l+  +el p+      ++ +y+ ql e ekA   f+++++
  MMETSP1137-20121227|3505_1  52 LQAGQVEDAKVALQRSIELSPDGTA---SRYMYLGQLAEGEKALGWFQQGIQ 100
                 7788888888888888888887543...334466677777777777777765 PP

  == domain 3    score: 2.3 bits;  conditional E-value: 0.022
   TIGR02521 169 pesllelaelklkkgqyaeAralleryqq 197
                 pe  +++a l l++++  +A+all++  +
  MMETSP1137-20121227|3505_1 173 PEPYQTMASLRLSQQRPEDAEALLAKALS 201
                 34444444444444444444444444333 PP

  == domain 4    score: 4.4 bits;  conditional E-value: 0.0048
   TIGR02521  42 leqgdlekAkenlekAleldpkda 65 
                 l++g+le A+++le+Al+ + +da
  MMETSP1137-20121227|3505_1 260 LQSGELEIAQAELEQALQFAQSDA 283
                 78999999*********9988876 PP

>> TIGR03939  PGA_TPR_OMP: poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.1   0.2   4.2e-06    0.0043      93     157 ..      14      79 ..       6     106 .. 0.81
   2 !    3.8   0.1    0.0027       2.8     434     473 ..     178     218 ..     173     226 .. 0.85
   3 ?   -0.0   0.1     0.039        40     315     373 ..     220     276 ..     216     281 .. 0.64

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 4.2e-06
   TIGR03939  93 AkAaRnekqwdkAlelyrkllqrdPknpdlllGlaltladagkdeeAlkalkelkerfp.sdaerl 157
                 A+A+ ++ + ++A+elyr++ q +P++p ll+    +++ ag+ e+A+ al++  e  p  +a+r+
  MMETSP1137-20121227|3505_1  14 ARACTEKLERENAIELYRRAVQIQPSDPALLAEFGEAALQAGQVEDAKVALQRSIELSPdGTASRY 79 
                 677777777789***************************************999888883333333 PP

  == domain 2    score: 3.8 bits;  conditional E-value: 0.0027
   TIGR03939 434 alaeveraRgwprrAeqllkkaesl.epdslsaergqaeta 473
                 ++a++++++ +p++Ae ll ka s+ e  + sa++ ++e++
  MMETSP1137-20121227|3505_1 178 TMASLRLSQQRPEDAEALLAKALSItESLEGSAQQPSLEMR 218
                 689*********************97777888887777665 PP

  == domain 3    score: -0.0 bits;  conditional E-value: 0.039
   TIGR03939 315 avAdaylalrqpekAlslyrelaqaepaknnleleekLfyAlleaeqyeeAqalldkll 373
                 a+   +++ ++  +Al+l++el  ++++   lel    + A l ++++e Aqa l+++l
  MMETSP1137-20121227|3505_1 220 ALSKLLMEVGMSAEALDLLQELRLEDDE--SLELWYLVVCAALQSGELEIAQAELEQAL 276
                 4455555666666777777777776655..46666677777777777777777776654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (322 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       114  (0.0277913); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.37u 0.15s 00:00:00.52 Elapsed: 00:00:00.35
# Mc/sec: 1214.30
//
Query:       MMETSP1137-20121227|3506_1  [L=294]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.3e-28   98.3   0.0    4.4e-28   96.6   0.0    1.8  1  TIGR02009 PGMB-YQAB-SF: beta-phosphoglucomutase family hydrolase
      2e-20   71.4   0.0    4.7e-17   60.4   0.0    2.2  2  TIGR01990 bPGM: beta-phosphoglucomutase
    9.2e-20   69.2   0.6      3e-15   54.5   0.0    2.9  2  TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3
    2.9e-13   47.7   0.5    4.5e-13   47.1   0.2    1.4  2  TIGR01449 PGP_bact: phosphoglycolate phosphatase, bacterial
    5.7e-09   33.7   1.0    2.6e-08   31.6   0.3    1.9  2  TIGR01454 AHBA_synth_RP: AHBA synthesis associated protein
    2.9e-08   31.5   0.0    6.1e-08   30.5   0.0    1.5  2  TIGR02247 HAD-1A3-hyp: epoxide hydrolase N-terminal domain-like phosphatase
    3.3e-08   30.9   0.1    4.7e-08   30.4   0.1    1.2  1  TIGR01422 phosphonatase: phosphonoacetaldehyde hydrolase
      6e-06   24.2   0.1    3.6e-05   21.7   0.0    1.9  2  TIGR01428 HAD_type_II: haloacid dehalogenase, type II
    2.5e-05   22.0   0.0    0.00017   19.2   0.0    2.0  2  TIGR02253 CTE7: HAD hydrolase, TIGR02253 family
    5.6e-05   20.6   0.0     0.0023   15.3   0.0    2.2  2  TIGR01548 HAD-SF-IA-hyp1: HAD hydrolase, TIGR01548 family
    7.3e-05   20.7   0.0     0.0019   16.2   0.0    2.1  2  TIGR01662 HAD-SF-IIIA: HAD hydrolase, family IIIA
    7.9e-05   21.0   0.0      0.023   13.0   0.0    2.3  2  TIGR01549 HAD-SF-IA-v1: HAD hydrolase, family IA, variant 1
    0.00027   18.6   0.0    0.00043   18.0   0.0    1.3  1  TIGR01993 Pyr-5-nucltdase: pyrimidine 5'-nucleotidase
     0.0012   16.6   0.1     0.0019   16.1   0.0    1.3  1  TIGR03351 PhnX-like: phosphonatase-like hydrolase
     0.0013   16.5   0.1       0.11   10.3   0.0    2.2  2  TIGR01656 Histidinol-ppas: histidinol-phosphate phosphatase domain
     0.0063   14.1   0.0     0.0085   13.7   0.0    1.2  1  TIGR02252 DREG-2: HAD hydrolase, REG-2-like, family IA
     0.0084   14.0   0.0      0.014   13.3   0.0    1.4  1  TIGR01489 DKMTPPase-SF: 2,3-diketo-5-methylthio-1-phosphopentane phosphatase


Domain annotation for each model (and alignments):
>> TIGR02009  PGMB-YQAB-SF: beta-phosphoglucomutase family hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.6   0.0   1.8e-30   4.4e-28       2     185 ..      59     268 ..      58     269 .. 0.79

  Alignments for each domain:
  == domain 1    score: 96.6 bits;  conditional E-value: 1.8e-30
   TIGR02009   2 kaviFDlDGvlvdtas.lHakAwkaladklglefd...eqinesl.kGlkredivrailksr...............gsk...elseekieqlaerknelyrellrltgaevlpgienlleelkkkkiavalgsss..knakaiLaklgltdlfdav..vdasevkegKPaPetFLaaaekLgvkpeecvvfEDaeaGveaaraagmfava 185
                 +a++FD DGvl+dt +  H  ++++ + + g++f+    ++      G  +e++ ++++ +                g         e +++l +rk++++  l+r+ ++ + pg+ +l +e+ ++k++va+ s s  +  +a++++l  +++++a     ++ v + KPaP+++L+aae Lgv+p++cvv+ED+  G +aa+aagm +++
  MMETSP1137-20121227|3506_1  59 AALLFDCDGVLADTERdGHRVSFNQAFSERGFDFEwavDEYGRLCeTGGGKERMTAYFNVNGwpagfesptteelvkG-LpvdPERLELVKGLHQRKTNIFMDLIRTGVVPLRPGVLRLVDEAMAAKVPVAVCSTSneAAVRALIETLMGEERYAAFsfFCGDAVPKKKPAPDVYLLAAETLGVEPSACVVIEDSGIGNKAAKAAGMTCLV 268
                 69************8637***************885543332222134444444445544446788888887776631.223244556689******************************************999544557888888777766654125799**********************************************86 PP

>> TIGR01990  bPGM: beta-phosphoglucomutase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.0   0.0    0.0012      0.28       2      35 ..      59      93 ..      58     101 .. 0.75
   2 !   60.4   0.0   1.9e-19   4.7e-17      68     184 ..     148     267 ..     142     271 .. 0.86

  Alignments for each domain:
  == domain 1    score: 9.0 bits;  conditional E-value: 0.0012
   TIGR01990  2 kaviFDlDGvitdtae.yhylawkkladelgiefd 35
                 a++FD DGv++dt +  h  ++++   e g  f+
  MMETSP1137-20121227|3506_1 59 AALLFDCDGVLADTERdGHRVSFNQAFSERGFDFE 93
                689***********862577777777777777666 PP

  == domain 2    score: 60.4 bits;  conditional E-value: 1.9e-19
   TIGR01990  68 eelaerknekYvellkeltpedvlpgikelleelkkkkikialasasknak..lvleklelkdkfdaiv..daaevkkgkPdPeiFlaaaeklgvspeecigieDaeaGieaikaagilav 184
                 + l +rk + +++l++      + pg+ +l++e+ ++k+ +a+ s+s+ a    ++e l  ++ + a     ++ v k kP+P+++l aae+lgv+p++c++ieD+  G +a+kaag++ +
  MMETSP1137-20121227|3506_1 148 KGLHQRKTNIFMDLIRT-GVVPLRPGVLRLVDEAMAAKVPVAVCSTSNEAAvrALIETLMGEERYAAFSffCGDAVPKKKPAPDVYLLAAETLGVEPSACVVIEDSGIGNKAAKAAGMTCL 267
                 56788888899998865.456689***********************9985226999998888777654226899*******************************************864 PP

>> TIGR01509  HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.6   0.1   0.00021     0.051       1      21 [.      60      80 ..      60      97 .. 0.79
   2 !   54.5   0.0   1.2e-17     3e-15      51     152 ..     154     267 ..     144     269 .. 0.83

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 0.00021
   TIGR01509  1 ailFDlDgvLvdtekglvpee 21
                a+lFD+DgvL dte ++   +
  MMETSP1137-20121227|3506_1 60 ALLFDCDGVLADTERDGHRVS 80
                68************9865555 PP

  == domain 2    score: 54.5 bits;  conditional E-value: 1.2e-17
   TIGR01509  51 kkqlaleeieeeelkllpgleellealrarg..lallTnspravrlgl.........edkfdkvid.dvgsgKPdpdiylqalkklglkpeeclfvdDsaagieaakaaGmktv 152
                 k +++ + i++  ++l+pg+  l++++ a +  +a+++ s++a   +l         +++f ++   +v+++KP+pd yl a+++lg++p++c++++Ds  g +aakaaGm++ 
  MMETSP1137-20121227|3506_1 154 KTNIFMDLIRTGVVPLRPGVLRLVDEAMAAKvpVAVCSTSNEAAVRALietlmgeerYAAFSFFCGdAVPKKKPAPDVYLLAAETLGVEPSACVVIEDSGIGNKAAKAAGMTCL 267
                 6788999999999999999999999988877336899988888776653333333336789999989********************************************986 PP

>> TIGR01449  PGP_bact: phosphoglycolate phosphatase, bacterial
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0       3.3   8.1e+02       2      15 ..      62      75 ..      61      89 .. 0.74
   2 !   47.1   0.2   1.9e-15   4.5e-13      86     204 ..     169     286 ..     135     294 .] 0.81

  Alignments for each domain:
  == domain 1    score: -2.8 bits;  conditional E-value: 3.3
   TIGR01449  2 lfDLDGtLvdsAPd 15
                lfD DG L d   d
  MMETSP1137-20121227|3506_1 62 LFDCDGVLADTERD 75
                79999999997655 PP

  == domain 2    score: 47.1 bits;  conditional E-value: 1.9e-15
   TIGR01449  86 vfpgveaaleaLrakGlrlglvtnkPealarplLellglakylev..ligGdslaqrkPdPePLllaaerlgvepaqmvyvGDsevDiaaArAAGlpsvlltyGYrygeaveelpadvlld 204
                 + pgv   ++   a+ ++++++    ea++r l+e l   +++++     Gd ++++kP P+  llaae lgvep  +v + Ds    +aA+AAG+  +l+t+G +  e v   + ++lld
  MMETSP1137-20121227|3506_1 169 LRPGVLRLVDEAMAAKVPVAVCSTSNEAAVRALIETLMGEERYAAfsFFCGDAVPKKKPAPDVYLLAAETLGVEPSACVVIEDSGIGNKAAKAAGMT-CLVTMGDA--ECVTLADLEALLD 286
                 458898999999999999****9999999999998776666665523689*********************************************96.78899977..5666555555555 PP

>> TIGR01454  AHBA_synth_RP: AHBA synthesis associated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.0      0.36        86       1      38 [.      61      99 ..      61     120 .. 0.78
   2 !   31.6   0.3   1.1e-10   2.6e-08      74     174 ..     167     269 ..     158     286 .. 0.85

  Alignments for each domain:
  == domain 1    score: 0.5 bits;  conditional E-value: 0.36
   TIGR01454  1 vvfdldgvlvdsf.avmreafaiayaevvgdgeapfeey 38
                ++fd dgvl d+     r +f+ a++e   d e   +ey
  MMETSP1137-20121227|3506_1 61 LLFDCDGVLADTErDGHRVSFNQAFSERGFDFEWAVDEY 99
                58*******997514566777777777766666666666 PP

  == domain 2    score: 31.6 bits;  conditional E-value: 1.1e-10
   TIGR01454  74 vevfegvpellaelradglgtaiatgksgprarsllealgllelld..evigsdevarpkpapdivrealdlldvaaeaavmvgdalidlasaraagvaavaa 174
                 v + +gv +l+ e  a  + +a+++    +  r+l+e+l   e +        d v++ kpapd+ + a + l+v + a+v++ d+ i  ++a+aag++++ +
  MMETSP1137-20121227|3506_1 167 VPLRPGVLRLVDEAMAAKVPVAVCSTSNEAAVRALIETLMGEERYAafSFFCGDAVPKKKPAPDVYLLAAETLGVEPSACVVIEDSGIGNKAAKAAGMTCLVT 269
                 556678889999999999999**99999999******9866665541245788********************************************998754 PP

>> TIGR02247  HAD-1A3-hyp: epoxide hydrolase N-terminal domain-like phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0       4.6   1.1e+03       3      16 ..      59      72 ..      57      77 .. 0.82
   2 !   30.5   0.0   2.5e-10   6.1e-08      82     208 ..     156     284 ..     143     286 .. 0.78

  Alignments for each domain:
  == domain 1    score: -3.1 bits;  conditional E-value: 4.6
   TIGR02247  3 kAvifDfGGvllss 16
                 A +fD  Gvl  +
  MMETSP1137-20121227|3506_1 59 AALLFDCDGVLADT 72
                6999******9765 PP

  == domain 2    score: 30.5 bits;  conditional E-value: 2.5e-10
   TIGR02247  82 kpvlellssentkllpemvkaikslrakGfkta.lltnnlfldkeakeallpsdlgalFDevvEsckeglrKPDariyqlvlerlgvkPeeivfLDDLgsnlkaAaklGittikvedee..qaikdLekl 208
                 + ++ l+++ +++l+p + ++++   a+   +a + t n    ++  e+l+  ++ a F      +    +KP + +y l+ e lgv+P+++v ++D g+  kaA++ G+t +          + dLe+l
  MMETSP1137-20121227|3506_1 156 NIFMDLIRTGVVPLRPGVLRLVDEAMAAKVPVAvCSTSNEAAVRALIETLMGEERYAAFSFFCGDAVP-KKKPAPDVYLLAAETLGVEPSACVVIEDSGIGNKAAKAAGMTCLVTMGDAecVTLADLEAL 284
                 45677888889999999999998877776766625689999999999999999999999877655443.489**************************************98754332201345677766 PP

>> TIGR01422  phosphonatase: phosphonoacetaldehyde hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.4   0.1     2e-10   4.7e-08      98     218 ..     167     285 ..     144     294 .] 0.78

  Alignments for each domain:
  == domain 1    score: 30.4 bits;  conditional E-value: 2e-10
   TIGR01422  98 aelipgvlevvaklrargikigsttGYtrevldv.vlkaAaaqGyrpdlvvaaddvpagRPaPamilknvielgvedvaavvKvdDtvpdieeGrnAgvwtvgvilssnelglseeeleald 218
                   l pgvl +v++  a ++ ++ ++  +++ + + + +   ++ y++ ++ + d vp+ +PaP   l +++ lgve ++a+v ++D+ ++ +  ++Ag+    +++ +++  ++ ++leal 
  MMETSP1137-20121227|3506_1 167 VPLRPGVLRLVDEAMAAKVPVAVCSTSNEAAVRAlIETLMGEERYAAFSFFCGDAVPKKKPAPDVYLLAAETLGVE-PSACVVIEDSGIGNKAAKAAGMTC--LVTMGDAECVTLADLEALL 285
                 45679*****************9988777666550556788999*******************************7.578999***************975..5556666667777777664 PP

>> TIGR01428  HAD_type_II: haloacid dehalogenase, type II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.0      0.58   1.4e+02       2      19 ..      59      76 ..      58     115 .. 0.77
   2 !   21.7   0.0   1.5e-07   3.6e-05     136     186 ..     215     265 ..     173     270 .. 0.79

  Alignments for each domain:
  == domain 1    score: 0.2 bits;  conditional E-value: 0.58
   TIGR01428  2 kalvFDvyGTLvdvesvv 19
                 al+FD+ G L d e   
  MMETSP1137-20121227|3506_1 59 AALLFDCDGVLADTERDG 76
                5899********998544 PP

  == domain 2    score: 21.7 bits;  conditional E-value: 1.5e-07
   TIGR01428 136 allsadavraYKPapkvYelalealgvkpeevllvasnawDlkgAkklGlk 186
                 + ++ dav + KPap+vY la+e+lgv+p++ +++  +    k+Ak++G++
  MMETSP1137-20121227|3506_1 215 SFFCGDAVPKKKPAPDVYLLAAETLGVEPSACVVIEDSGIGNKAAKAAGMT 265
                 46999********************************************97 PP

>> TIGR02253  CTE7: HAD hydrolase, TIGR02253 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.0      0.39        94       4      20 ..      60      76 ..      57     113 .. 0.78
   2 !   19.2   0.0   7.2e-07   0.00017     143     191 ..     219     266 ..     187     279 .. 0.89

  Alignments for each domain:
  == domain 1    score: 0.5 bits;  conditional E-value: 0.39
   TIGR02253  4 avfFDlddTLidtskla 20
                a++FD d+ L dt+  +
  MMETSP1137-20121227|3506_1 60 ALLFDCDGVLADTERDG 76
                89**********98765 PP

  == domain 2    score: 19.2 bits;  conditional E-value: 7.2e-07
   TIGR02253 143 seelgveKPhpkiFkaalkrlgvkpeeavmvGDrlekDikGaknlglkt 191
                 ++ ++ +KP+p ++  a++ lgv+p  +v + D+     k ak++g+  
  MMETSP1137-20121227|3506_1 219 GDAVPKKKPAPDVYLLAAETLGVEPSACVVIEDSGIG-NKAAKAAGMTC 266
                 678899**************************98655.48899999987 PP

>> TIGR01548  HAD-SF-IA-hyp1: HAD hydrolase, TIGR01548 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.0     0.048        12       2      16 ..      60      74 ..      59      88 .. 0.82
   2 !   15.3   0.0   9.7e-06    0.0023     117     186 ..     179     251 ..     137     258 .. 0.82

  Alignments for each domain:
  == domain 1    score: 3.2 bits;  conditional E-value: 0.048
   TIGR01548  2 avvlDvDGvlvdvse 16
                a+++D DGvl+d  +
  MMETSP1137-20121227|3506_1 60 ALLFDCDGVLADTER 74
                899********9876 PP

  == domain 2    score: 15.3 bits;  conditional E-value: 9.7e-06
   TIGR01548 117 aLtradiavavltGrpsdeadvvLdr.vGldilgevrialdDaaa..kPnPraliaaaerlgadahsavfvGD 186
                 +   a+++vav +   ++  + ++++  G +  +   +  +Da +  kP P   ++aae lg+++   v++ D
  MMETSP1137-20121227|3506_1 179 EAMAAKVPVAVCSTSNEAAVRALIETlMGEERYAAFSFFCGDAVPkkKPAPDVYLLAAETLGVEPSACVVIED 251
                 444489999999999999888888873577788888999999876689****************998888766 PP

>> TIGR01662  HAD-SF-IIIA: HAD hydrolase, family IIIA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.0      0.14        35       2      14 ..      60      72 ..      59      90 .. 0.76
   2 !   16.2   0.0   7.8e-06    0.0019      27     135 ..     170     266 ..     166     273 .. 0.80

  Alignments for each domain:
  == domain 1    score: 2.3 bits;  conditional E-value: 0.14
   TIGR01662  2 lvvlDlDgtLidd 14
                ++++D Dg+L d 
  MMETSP1137-20121227|3506_1 60 ALLFDCDGVLADT 72
                689*******942 PP

  == domain 2    score: 16.2 bits;  conditional E-value: 7.8e-06
   TIGR01662  27 ypevidalaelkkeGykvvivtNqsgigrgkesveevsekveslleelgvpidvliacphskceyrKpktgmleealkrlneidakesvvvGDavltDleaakrvGlat 135
                  p+v + + e++++++ v++ + ++      +   +v + +e l+ e +    + ++c+      +Kp +  ++ a + l  ++++ +vv+ D ++   +aak++G+++
  MMETSP1137-20121227|3506_1 170 RPGVLRLVDEAMAAKVPVAVCSTSN-----EA---AVRALIETLMGE-ERYAAFSFFCG-DAVPKKKPAPDVYLLAAETL-GVEPSACVVIED-SGIGNKAAKAAGMTC 266
                 6788899999999999999999999.....23...445555566666.44456667776.23579***************.8***********.*************97 PP

>> TIGR01549  HAD-SF-IA-v1: HAD hydrolase, family IA, variant 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   0.0     0.013       3.2       1      33 [.      60      94 ..      60     104 .. 0.76
   2 !   13.0   0.0   9.4e-05     0.023      98     135 ..     211     248 ..     180     263 .. 0.79

  Alignments for each domain:
  == domain 1    score: 6.0 bits;  conditional E-value: 0.013
   TIGR01549  1 ailfDidGTLvdse..akeealeqtleefsasfkr 33
                a+lfD+dG+L d+e    +  ++q+++e + +f++
  MMETSP1137-20121227|3506_1 60 ALLFDCDGVLADTErdGHRVSFNQAFSERGFDFEW 94
                589********976225678888888877766665 PP

  == domain 2    score: 13.0 bits;  conditional E-value: 9.4e-05
   TIGR01549  98 edyfelilvsdepgsKpepeiflaaleslglepevlhv 135
                 +  f+++ ++  p +Kp p+++l a+e+lg+ep +++v
  MMETSP1137-20121227|3506_1 211 YAAFSFFCGDAVPKKKPAPDVYLLAAETLGVEPSACVV 248
                 56788887777777*****************9876655 PP

>> TIGR01993  Pyr-5-nucltdase: pyrimidine 5'-nucleotidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.0   1.8e-06   0.00043     108     180 ..     195     266 ..     180     269 .. 0.75

  Alignments for each domain:
  == domain 1    score: 18.0 bits;  conditional E-value: 1.8e-06
   TIGR01993 108 kahaeralkrLgiedcFdgi.idieaanlelilKPspeayekalreagvdpekaifldDsarNiaaakalglkt 180
                 +a +++ ++ L  e+++ +  + + +a ++   KP+p++y  a+++ gv+p+ +++++Ds    +aaka g++ 
  MMETSP1137-20121227|3506_1 195 EAAVRALIETLMGEERYAAFsFFCGDAVPK--KKPAPDVYLLAAETLGVEPSACVVIEDSGIGNKAAKAAGMTC 266
                 555556666666666666542333344444..5****************************999*******975 PP

>> TIGR03351  PhnX-like: phosphonatase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0   7.7e-06    0.0019      73     198 ..     154     276 ..     123     289 .. 0.82

  Alignments for each domain:
  == domain 1    score: 16.1 bits;  conditional E-value: 7.7e-06
   TIGR03351  73 FeerlaelyddaevvalpGveeairdLrskGikvaLttGfdrevaeklleklgWsvgedvDavvtssdvaagRPaPdliyralertgvqdvrsvlvaGDtanDleaginagatlvvGvltGasdae 198
                   + + +l+  + v   pGv  ++ +  +  + va+    +++ + +l+e+l  +    +    +++ v + +PaPd+ + a e  gv+  ++ +v+ D+ +  +a+++ag+t++  v+ G  +  
  MMETSP1137-20121227|3506_1 154 KTNIFMDLIRTGVVPLRPGVLRLVDEAMAAKVPVAVCSTSNEAAVRALIETLMGEERYAAFSFFCGDAVPKKKPAPDVYLLAAETLGVEP-SACVVIEDSGIGNKAAKAAGMTCL--VTMGDAECV 276
                 44555666667777778999999999999999***99999999999******99999999999*********************999987.5678899**************999..566655555 PP

>> TIGR01656  Histidinol-ppas: histidinol-phosphate phosphatase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.0     0.034       8.1       2      17 ..      60      75 ..      59      98 .. 0.82
   2 !   10.3   0.0   0.00044      0.11      99     142 ..     223     266 ..     189     272 .. 0.89

  Alignments for each domain:
  == domain 1    score: 4.2 bits;  conditional E-value: 0.034
   TIGR01656  2 alllDrDGvlnedsqs 17
                all+D DGvl++   +
  MMETSP1137-20121227|3506_1 60 ALLFDCDGVLADTERD 75
                89********998764 PP

  == domain 2    score: 10.3 bits;  conditional E-value: 0.00044
   TIGR01656  99 dcrKPkpglilealkrlgvdasrslvvGDrldDvqaarkaGaaa 142
                   +KP p++ l a++ lgv+ s  +v+ D+    +aa++aG+  
  MMETSP1137-20121227|3506_1 223 PKKKPAPDVYLLAAETLGVEPSACVVIEDSGIGNKAAKAAGMTC 266
                 457************************************99975 PP

>> TIGR02252  DREG-2: HAD hydrolase, REG-2-like, family IA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   0.0   3.5e-05    0.0085     107     201 ..     170     266 ..     150     268 .. 0.79

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 3.5e-05
   TIGR02252 107 vedlekllkklreeglklgvvSNfDs.rlrklLealgl.eelfdfvvvSa.evgaeKPdpkIFekaleklgikpeevlhiGDslekDvegakaaGlra 201
                  +++ +l++++ ++++ ++v S  ++  +r+l+e l   e +  f ++   +v  +KP p ++  a e lg++p+ ++ i Ds     ++akaaG++ 
  MMETSP1137-20121227|3506_1 170 RPGVLRLVDEAMAAKVPVAVCSTSNEaAVRALIETLMGeERYAAFSFFCGdAVPKKKPAPDVYLLAAETLGVEPSACVVIEDSGIG-NKAAKAAGMTC 266
                 567888899999999999999976541678888775443778887776651577899***********************998765.58899999875 PP

>> TIGR01489  DKMTPPase-SF: 2,3-diketo-5-methylthio-1-phosphopentane phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   0.0   5.7e-05     0.014      58     115 ..     152     211 ..     126     226 .. 0.84

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 5.7e-05
   TIGR01489  58 glkedeikevlks..vpidegvkefiefikekeidliviSdgnefFidavleaigvkdvf 115
                 ++k ++  + +++  vp+++gv+ ++  + + ++++ v S +ne  ++a++e  ++++ +
  MMETSP1137-20121227|3506_1 152 QRKTNIFMDLIRTgvVPLRPGVLRLVDEAMAAKVPVAVCSTSNEAAVRALIETLMGEERY 211
                 4677778888888889************************************99988754 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (294 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       133  (0.0324232); expected 82.0 (0.02)
Passed bias filter:                      127  (0.0309605); expected 82.0 (0.02)
Passed Vit filter:                        30  (0.00731351); expected 4.1 (0.001)
Passed Fwd filter:                        17  (0.00414432); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              17  [number of targets reported over threshold]
# CPU time: 0.31u 0.18s 00:00:00.49 Elapsed: 00:00:00.48
# Mc/sec: 808.43
//
Query:       MMETSP1137-20121227|3507_1  [L=558]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (558 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       102  (0.0248659); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.16s 00:00:00.55 Elapsed: 00:00:00.54
# Mc/sec: 1363.89
//
Query:       MMETSP1137-20121227|3508_1  [L=125]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.3e-19   66.8   0.0      4e-19   66.5   0.0    1.1  1  TIGR01068 thioredoxin: thioredoxin
    2.9e-12   44.6   0.1    3.7e-12   44.3   0.0    1.1  1  TIGR01126 pdi_dom: protein disulfide-isomerase domain
    1.3e-08   32.7   0.1    1.8e-08   32.2   0.0    1.2  1  TIGR01130 ER_PDI_fam: protein disulfide isomerases
    5.9e-08   30.3   0.2    1.6e-06   25.7   0.1    2.0  2  TIGR00385 dsbE: periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily
  ------ inclusion threshold ------
      0.014   13.8   0.0      0.021   13.2   0.0    1.4  1  TIGR02196 GlrX_YruB: glutaredoxin-like protein, YruB-family
      0.028   12.4   0.1      0.039   11.9   0.0    1.2  1  TIGR00411 redox_disulf_1: redox-active disulfide protein 1
      0.029   10.8   0.0      0.031   10.7   0.0    1.1  1  TIGR00424 APS_reduc: 5'-adenylylsulfate reductase, thioredoxin-independent


Domain annotation for each model (and alignments):
>> TIGR01068  thioredoxin: thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.5   0.0   6.9e-22     4e-19       5      95 ..      19     107 ..      15     112 .. 0.87

  Alignments for each domain:
  == domain 1    score: 66.5 bits;  conditional E-value: 6.9e-22
   TIGR01068   5 nfeetvassdklvlvDfwAeWCgpCkmlaPvleelakeleekvkvvKlnvdeeqeiaakygirsiPtlllfkngkevkrvvGakpkaalke 95 
                 +++++ a+++kl l+D +A+WC pCk+ aPv + +++e+++   + K++vd+  e++++ g++s+Pt  + +  +e  +  G ++ +a+++
  MMETSP1137-20121227|3508_1  19 TLQTQSAAESKLLLIDCYATWCPPCKAAAPVYARMSEEYAN-CVFSKVDVDKAGEVSSHLGVTSMPTFKIXRGPRELGTCQGWQE-SAVRR 107
                 56667777789*************************99995.89*************************9999999999999876.55555 PP

>> TIGR01126  pdi_dom: protein disulfide-isomerase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.3   0.0   6.3e-15   3.7e-12       5      80 ..      19      90 ..      16     104 .. 0.89

  Alignments for each domain:
  == domain 1    score: 44.3 bits;  conditional E-value: 6.3e-15
   TIGR01126  5 nfdelvldenkdvlvefyaPWCGhCkklaPeyeklakelkkeeekvkiakvdataekelaskfkvsgfPtlkffkk 80
                +++   + e+k +l++ ya WC  Ck+ aP+y ++++e+++     + +kvd ++  e++s+++v++ Pt k+ + 
  MMETSP1137-20121227|3508_1 19 TLQTQSAAESKLLLIDCYATWCPPCKAAAPVYARMSEEYAN----CVFSKVDVDKAGEVSSHLGVTSMPTFKIXRG 90
                56666667899****************************94....79************************99765 PP

>> TIGR01130  ER_PDI_fam: protein disulfide isomerases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.2   0.0   3.1e-11   1.8e-08      17      82 ..      27      88 ..      16      99 .. 0.59

  Alignments for each domain:
  == domain 1    score: 32.2 bits;  conditional E-value: 3.1e-11
   TIGR01130 17 enelvLveFYAPWCGHCksLaPeYekAAeelkkkspkvklakvDateekelaqkygvsGyPtLkif 82
                e++l+L+  YA WC  Ck+ aP Y++    ++++ ++ +  kvD  +  e++++ gv+  Pt ki 
  MMETSP1137-20121227|3508_1 27 ESKLLLIDCYATWCPPCKAAAPVYAR----MSEEYANCVFSKVDVDKAGEVSSHLGVTSMPTFKIX 88
                44555555555555555555555544....333344445555555555555555555555555555 PP

>> TIGR00385  dsbE: periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.7   0.1   2.7e-09   1.6e-06      50      91 ..      15      56 ..       5      63 .. 0.84
   2 ?    3.2   0.0     0.022        13     118     140 ..      62      84 ..      56      91 .. 0.85

  Alignments for each domain:
  == domain 1    score: 25.7 bits;  conditional E-value: 2.7e-09
   TIGR00385 50 ekvqlltaevlkkgklvLlnvwasWCptCraehplLkelake 91
                +++++l+++ + ++kl L++ +a+WCp+C+a  p+  ++++e
  MMETSP1137-20121227|3508_1 15 DELKTLQTQSAAESKLLLIDCYATWCPPCKAAAPVYARMSEE 56
                44577888999999*********************9999987 PP

  == domain 2    score: 3.2 bits;  conditional E-value: 0.022
   TIGR00385 118 yqlvlaDekGklaldlGvygaPe 140
                 +  v  D+ G+++  lGv+++P 
  MMETSP1137-20121227|3508_1  62 FSKVDVDKAGEVSSHLGVTSMPT 84 
                 566788**************994 PP

>> TIGR02196  GlrX_YruB: glutaredoxin-like protein, YruB-family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   3.5e-05     0.021       8      57 ..      38      88 ..      33     110 .. 0.76

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 3.5e-05
   TIGR02196  8 pwCppCkkakeyLkskgiafeeidvek.dsaaaeellkklgqrsvPvivig 57
                +wCppCk+a     +   ++ ++   k d   a e+ ++lg  s P+  i 
  MMETSP1137-20121227|3508_1 38 TWCPPCKAAAPVYARMSEEYANCVFSKvDVDKAGEVSSHLGVTSMPTFKIX 88
                7*******9999888777777766544355667889999999999998875 PP

>> TIGR00411  redox_disulf_1: redox-active disulfide protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   6.6e-05     0.039      10      61 ..      39      89 ..      33     105 .. 0.88

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 6.6e-05
   TIGR00411 10 tCPyCPkakkvveevakeegdkvevekinvmedlkkaleyGimavPaiving 61
                 CP C +a  v  ++ +e ++ v   k++v++  + + + G+ ++P+  i  
  MMETSP1137-20121227|3508_1 39 WCPPCKAAAPVYARMSEEYANCV-FSKVDVDKAGEVSSHLGVTSMPTFKIXR 89
                6**************99999877.579********************98865 PP

>> TIGR00424  APS_reduc: 5'-adenylylsulfate reductase, thioredoxin-independent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   5.2e-05     0.031     375     405 ..      31      61 ..       6      92 .. 0.67

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 5.2e-05
   TIGR00424 375 wlvvlyapwcpfcqameasyvelaeklagsg 405
                  l+  ya wcp c+a    y  ++e  a   
  MMETSP1137-20121227|3508_1  31 LLIDCYATWCPPCKAAAPVYARMSEEYANCV 61 
                 45668******************99998643 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (125 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       110  (0.0268162); expected 82.0 (0.02)
Passed bias filter:                      103  (0.0251097); expected 82.0 (0.02)
Passed Vit filter:                        18  (0.0043881); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.19u 0.15s 00:00:00.34 Elapsed: 00:00:00.83
# Mc/sec: 198.78
//
Query:       MMETSP1137-20121227|3509_1  [L=736]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.9e-09   35.5   0.0    4.3e-09   34.4   0.0    1.5  1  TIGR00229 sensory_box: PAS domain S-box protein
      6e-08   29.5   0.1    1.3e-07   28.3   0.0    1.5  2  TIGR02938 nifL_nitrog: nitrogen fixation negative regulator NifL


Domain annotation for each model (and alignments):
>> TIGR00229  sensory_box: PAS domain S-box protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.4   0.0   2.1e-12   4.3e-09       6     112 ..     434     547 ..     431     549 .. 0.86

  Alignments for each domain:
  == domain 1    score: 34.4 bits;  conditional E-value: 2.1e-12
   TIGR00229   6 ryrailesspdaiivvdeeG...nilyvNrafeeifGYsaeeliGrnvle.lipeedreevrerierrlegerepvseerrv..krkdGseiwvevsvspird.aggelgvvgi 112
                  + a++++ ++ai+vvd +     +++vN afe ++GYs+ e++G n +     + d + +++ +e ++e+++   s  +rv  ++k+G+e+   v++ pi + ag+ ++ v++
  MMETSP1137-20121227|3509_1 434 TFTAMCDNLDVAIVVVDVRVgglPLTFVNSAFENLTGYSRHEAVGNNCRFlQGDKTDASSIAQFVEFIREPKIGSSSDIVRVinYTKQGEEFENCVTLHPIFNqAGKYTYSVAV 547
                 699**************875222579************************66677788888999999999777777777777799*****************999999998887 PP

>> TIGR02938  nifL_nitrog: nitrogen fixation negative regulator NifL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.1      0.21   4.2e+02     260     291 ..      75      96 ..      52     128 .. 0.61
   2 !   28.3   0.0   6.3e-11   1.3e-07       6     110 ..     435     546 ..     432     564 .. 0.84

  Alignments for each domain:
  == domain 1    score: -3.0 bits;  conditional E-value: 0.21
   TIGR02938 260 lsalkallaeeeklealretlsaaihrlqgPl 291
                 ++           le+lr+ + +a+  +q+P 
  MMETSP1137-20121227|3509_1  75 ANE----------LESLRQEMETAMQAMQKPY 96 
                 333..........4555555555555555553 PP

  == domain 2    score: 28.3 bits;  conditional E-value: 6.3e-11
   TIGR02938   6 frqtvdqapvaisitdlkan...ilyanaafseitGyakeeviGknesvlsnrttPpevyqalwgslaekkPwaG....kllnrrkdgelylaeltvaPvlneaGetthflG 110
                 f +  d+ +vai + d +     + ++n+af+++tGy+++e +G+n   l   +t      ++ + + e k  +     +++n  k ge +   +t+ P+ n+aG+ t+ + 
  MMETSP1137-20121227|3509_1 435 FTAMCDNLDVAIVVVDVRVGglpLTFVNSAFENLTGYSRHEAVGNNCRFLQGDKTDASSIAQFVEFIREPKIGSSsdivRVINYTKQGEEFENCVTLHPIFNQAGKYTYSVA 546
                 66778999*********98622266**************************9999999999999999988866543333799************************999775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (736 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       193  (0.0470502); expected 82.0 (0.02)
Passed bias filter:                      145  (0.0353486); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.14s 00:00:00.68 Elapsed: 00:00:00.86
# Mc/sec: 1129.58
//
Query:       MMETSP1137-20121227|3510_1  [L=100]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (100 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        53  (0.0129205); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.16s 00:00:00.31 Elapsed: 00:00:00.44
# Mc/sec: 299.98
//
Query:       MMETSP1137-20121227|3511_1  [L=380]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (380 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       190  (0.0463189); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.13s 00:00:00.41 Elapsed: 00:00:00.55
# Mc/sec: 911.92
//
Query:       MMETSP1137-20121227|3512_1  [L=91]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (91 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        84  (0.0204778); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.17s 00:00:00.29 Elapsed: 00:00:00.25
# Mc/sec: 480.44
//
Query:       MMETSP1137-20121227|3513_1  [L=144]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (144 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        98  (0.0238908); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.16s 00:00:00.34 Elapsed: 00:00:00.27
# Mc/sec: 703.94
//
Query:       MMETSP1137-20121227|3514_1  [L=212]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (212 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       103  (0.0251097); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.15s 00:00:00.35 Elapsed: 00:00:00.41
# Mc/sec: 682.48
//
Query:       MMETSP1137-20121227|3516_1  [L=133]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (133 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        50  (0.0121892); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.12s 00:00:00.28 Elapsed: 00:00:00.41
# Mc/sec: 428.16
//
Query:       MMETSP1137-20121227|3517_1  [L=89]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.3e-22   75.1   0.0    3.5e-22   75.0   0.0    1.0  1  TIGR01257 rim_protein: rim ABC transporter
    5.6e-14   50.0   0.0    5.7e-14   49.9   0.0    1.0  1  TIGR01188 drrA: daunorubicin resistance ABC transporter, ATP-binding protein
    5.7e-08   29.9   0.0    6.1e-08   29.8   0.0    1.0  1  TIGR01288 nodI: nodulation ABC transporter NodI
    6.3e-08   30.2   0.0    6.9e-08   30.1   0.0    1.0  1  TIGR00968 3a0106s01: sulfate ABC transporter, ATP-binding protein
    1.4e-07   29.1   0.0    1.4e-07   29.1   0.0    1.0  1  TIGR03522 GldA_ABC_ATP: gliding motility-associated ABC transporter ATP-binding subunit GldA
    9.9e-07   26.3   0.0    1.1e-06   26.1   0.0    1.0  1  TIGR03864 PQQ_ABC_ATP: ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system
    1.1e-06   24.4   0.0    1.2e-06   24.2   0.0    1.0  1  TIGR00956 3a01205: pleiotropic drug resistance family protein
    1.6e-06   25.8   0.0    1.8e-06   25.6   0.0    1.0  1  TIGR01189 ccmA: heme ABC exporter, ATP-binding protein CcmA
    2.4e-06   25.0   0.0    2.7e-06   24.8   0.0    1.0  1  TIGR03410 urea_trans_UrtE: urea ABC transporter, ATP-binding protein UrtE
    3.3e-06   23.8   0.1    3.5e-06   23.7   0.0    1.0  1  TIGR00955 3a01204: pigment precursor permease
    5.5e-06   23.9   0.0    6.1e-06   23.8   0.0    1.0  1  TIGR02982 heterocyst_DevA: ABC exporter ATP-binding subunit, DevA family
    3.1e-05   21.0   0.0    3.3e-05   20.9   0.0    1.0  1  TIGR01187 potA: polyamine ABC transporter, ATP-binding protein
     0.0016   15.5   0.0     0.0017   15.4   0.0    1.0  1  TIGR01186 proV: glycine betaine/L-proline transport ATP binding subunit
     0.0019   15.6   0.0     0.0019   15.6   0.0    1.2  1  TIGR01166 cbiO: cobalt ABC transporter, ATP-binding protein
     0.0023   15.5   0.0     0.0025   15.4   0.0    1.0  1  TIGR02673 FtsE: cell division ATP-binding protein FtsE
     0.0026   14.9   0.0     0.0028   14.8   0.0    1.0  1  TIGR02142 modC_ABC: molybdate ABC transporter, ATP-binding protein
      0.005   14.2   0.0     0.0053   14.1   0.0    1.0  1  TIGR03608 L_ocin_972_ABC: putative bacteriocin export ABC transporter, lactococcin 972 group
     0.0061   14.1   0.0      0.013   13.1   0.0    1.5  1  TIGR03771 anch_rpt_ABC: anchored repeat-type ABC transporter, ATP-binding subunit
     0.0088   13.4   0.0     0.0097   13.3   0.0    1.0  1  TIGR02211 LolD_lipo_ex: lipoprotein releasing system, ATP-binding protein
     0.0089   13.5   0.0     0.0094   13.5   0.0    1.0  1  TIGR03740 galliderm_ABC: lantibiotic protection ABC transporter, ATP-binding subunit
     0.0092   12.8   0.0       0.01   12.7   0.0    1.0  1  TIGR02314 ABC_MetN: D-methionine ABC transporter, ATP-binding protein
     0.0093   13.1   0.0     0.0093   13.1   0.0    1.1  1  TIGR03873 F420-0_ABC_ATP: proposed F420-0 ABC transporter, ATP-binding protein


Domain annotation for each model (and alignments):
>> TIGR01257  rim_protein: rim ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.0   0.0   1.9e-24   3.5e-22    2008    2080 ..      15      87 ..       2      89 .] 0.90

  Alignments for each domain:
  == domain 1    score: 75.0 bits;  conditional E-value: 1.9e-24
   TIGR01257 2008 sdvhqnmgycpqfdaiddlltgrehlylyarlrgvpaeeiekvanwsikslglslyadrlagtysggnkrkls 2080
                      + +gycpq da++ l+tgre l +yar++ vp+ eie   +  i+ l l+ +adr++gtysggnkrkl 
  MMETSP1137-20121227|3517_1   15 KATRKLIGYCPQHDALQSLMTGREMLRMYARIKQVPSSEIEDEVEALIQDLDLTKFADRVCGTYSGGNKRKLC 87  
                  5566789****************************************************************97 PP

>> TIGR01188  drrA: daunorubicin resistance ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.9   0.0   3.1e-16   5.7e-14      50     134 ..       3      87 ..       1      89 [] 0.94

  Alignments for each domain:
  == domain 1    score: 49.9 bits;  conditional E-value: 3.1e-16
   TIGR01188  50 arvaGyDvvrepdevRrsigvvpqkasvdedLtarenlellgelyglpkkeaeeraeellelvelkeaadkkvktysgGmrrrle 134
                 a + G    r  +  R+ ig  pq+ ++++ +t+re l +++++  +p +e+e+ +e l++ ++l+++ad+  +tysgG +r+l 
  MMETSP1137-20121227|3517_1   3 ALLHGLSTRRSQKATRKLIGYCPQHDALQSLMTGREMLRMYARIKQVPSSEIEDEVEALIQDLDLTKFADRVCGTYSGGNKRKLC 87 
                 566777777888999********************************************************************96 PP

>> TIGR01288  nodI: nodulation ABC transporter NodI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.8   0.0   3.3e-10   6.1e-08      72     145 ..      14      87 ..       4      89 .] 0.93

  Alignments for each domain:
  == domain 1    score: 29.8 bits;  conditional E-value: 3.3e-10
   TIGR01288  72 arlarakigvvpqfdnldreftvrenllvfgryfglstreieevipsllefarleskadvrvadlsggmkrrlt 145
                  +++r  ig  pq d+l+  +t re l ++ r  ++ + eie+ + +l++   l   ad    + sgg kr+l 
  MMETSP1137-20121227|3517_1  14 QKATRKLIGYCPQHDALQSLMTGREMLRMYARIKQVPSSEIEDEVEALIQDLDLTKFADRVCGTYSGGNKRKLC 87 
                 4678999*****************************************************************97 PP

>> TIGR00968  3a0106s01: sulfate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.1   0.0   3.7e-10   6.9e-08      59     140 ..       5      87 ..       2      89 .] 0.88

  Alignments for each domain:
  == domain 1    score: 30.1 bits;  conditional E-value: 3.7e-10
   TIGR00968  59 leGrdvtrvkv.rdreiGfvfqhyalfkhltvrdniafGleirkkdkakikakveellelvqleklgdrypsqlsGGqrqrva 140
                 l+G  + r +   ++ iG+  qh al   +t r+ + +  +i++ ++ +i + ve l++ ++l+k++dr     sGG+++++ 
  MMETSP1137-20121227|3517_1   5 LHGLSTRRSQKaTRKLIGYCPQHDALQSLMTGREMLRMYARIKQVPSSEIEDEVEALIQDLDLTKFADRVCGTYSGGNKRKLC 87 
                 56666655554045569*************************************************************99875 PP

>> TIGR03522  GldA_ABC_ATP: gliding motility-associated ABC transporter ATP-binding subunit GldA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.1   0.0   7.8e-10   1.4e-07      63     141 ..       7      85 ..       2      89 .] 0.90

  Alignments for each domain:
  == domain 1    score: 29.1 bits;  conditional E-value: 7.8e-10
   TIGR03522  63 gedvlknslevrkniGylPehnPlyldlyvreylefsaalyklkgrklkkrveelielvGlkaeqhkkigalskGyrqr 141
                 g +  ++ ++ rk iGy P+h+ l   +  re l++ a + ++ + +++++ve+li+   l++ + +  g  s G +++
  MMETSP1137-20121227|3517_1   7 GLSTRRSQKATRKLIGYCPQHDALQSLMTGREMLRMYARIKQVPSSEIEDEVEALIQDLDLTKFADRVCGTYSGGNKRK 85 
                 66677888999***************************************************99999999999887765 PP

>> TIGR03864  PQQ_ABC_ATP: ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.1   0.0     6e-09   1.1e-06      61     141 ..       6      86 ..       2      89 .] 0.95

  Alignments for each domain:
  == domain 1    score: 26.1 bits;  conditional E-value: 6e-09
   TIGR03864  61 aGldlrrapkealarlGvvfqqstlDldlsveqnlryhaaLhGlsraeaeerieealarlglaeraeekvreLnGGhrrrv 141
                  Gl+ rr++k+  + +G   q+ +l   ++ ++ lr +a ++ ++++e e+++e+++++l+l++ a+    + +GG++r++
  MMETSP1137-20121227|3517_1   6 HGLSTRRSQKATRKLIGYCPQHDALQSLMTGREMLRMYARIKQVPSSEIEDEVEALIQDLDLTKFADRVCGTYSGGNKRKL 86 
                 699999999999999***************************************************999**********97 PP

>> TIGR00956  3a01205: pleiotropic drug resistance family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.2   0.0   6.7e-09   1.2e-06     829     899 ..      12      79 ..       5      86 .. 0.89

  Alignments for each domain:
  == domain 1    score: 24.2 bits;  conditional E-value: 6.7e-09
   TIGR00956 829 kldssFqRsiGYvqqqDlHletstvreaLrfsAylRqpkevskkekneyveevikllelesyadAvvGvpG 899
                 + +++ ++ iGY+ q+D   + +t re Lr  A+++   +v+ +e ++ ve++i+ l+l+++ad v G+  
  MMETSP1137-20121227|3517_1  12 RSQKATRKLIGYCPQHDALQSLMTGREMLRMYARIK---QVPSSEIEDEVEALIQDLDLTKFADRVCGTYS 79 
                 567777889************************986...599*************************9864 PP

>> TIGR01189  ccmA: heme ABC exporter, ATP-binding protein CcmA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.6   0.0   9.7e-09   1.8e-06      66     138 ..      12      88 ..       3      89 .] 0.82

  Alignments for each domain:
  == domain 1    score: 25.6 bits;  conditional E-value: 9.7e-09
   TIGR01189  66 eqrdelaeellylgHldglKaeLsalEnLkfyaallq....seqk.tveealekvgLsgledlpvaqLsAGqkrRlal 138
                 ++++ +++ + y   +d+l++ ++ +E L+ ya++ q    +  + +ve+ +++++L++++d+++ + s G kr+l +
  MMETSP1137-20121227|3517_1  12 RSQKATRKLIGYCPQHDALQSLMTGREMLRMYARIKQvpssEI-EdEVEALIQDLDLTKFADRVCGTYSGGNKRKLCV 88 
                 45555667899************************99654322.2378888899*********************976 PP

>> TIGR03410  urea_trans_UrtE: urea ABC transporter, ATP-binding protein UrtE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.8   0.0   1.5e-08   2.7e-06      64     142 ..       8      88 ..       4      89 .] 0.90

  Alignments for each domain:
  == domain 1    score: 24.8 bits;  conditional E-value: 1.5e-08
   TIGR03410  64 itklkpeervkaGiayvpqGreifpkltveenlelglealkkkekkipeeiyelFPv..lkemlkRrgGdLsGGqqqqlai 142
                 +++ ++++  ++ i+y pq   + + +t +e l++ ++ ++  +++i++e+ +l     l+++ +R  G  sGG + +l +
  MMETSP1137-20121227|3517_1   8 LSTRRSQKATRKLIGYCPQHDALQSLMTGREMLRMYARIKQVPSSEIEDEVEALIQDldLTKFADRVCGTYSGGNKRKLCV 88 
                 667888999999***************************9999**********9986226799**************9987 PP

>> TIGR00955  3a01204: pigment precursor permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.7   0.0   1.9e-08   3.5e-06      92     177 ..      12      88 ..       2      89 .] 0.88

  Alignments for each domain:
  == domain 1    score: 23.7 bits;  conditional E-value: 1.9e-08
   TIGR00955  92 veakemraisayvqqddlfiptltvrehLmfsahlrlkrrltkkekrerveevleelgLrkcadtrigvpgrvkglSgGerkRlal 177
                   +k  r+  +y  q+d +   +t re L + a+++   ++ ++e +  ve+++++l L+k ad + g      + SgG++++l +
  MMETSP1137-20121227|3517_1  12 RSQKATRKLIGYCPQHDALQSLMTGREMLRMYARIK---QVPSSEIEDEVEALIQDLDLTKFADRVCG------TYSGGNKRKLCV 88 
                 456788999************************887...47789************************......689****99975 PP

>> TIGR02982  heterocyst_DevA: ABC exporter ATP-binding subunit, DevA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.8   0.0   3.3e-08   6.1e-06      74     151 ..      11      87 ..       2      89 .] 0.88

  Alignments for each domain:
  == domain 1    score: 23.8 bits;  conditional E-value: 3.3e-08
   TIGR02982  74 ekelvqvrrkiGyifqahnllesltaeqnvrmalelkeklsakeakakaeelleavgleerldykpedlsgGqkqrva 151
                 +++ ++ r+ iGy  q+  l + +t ++ +rm + +k+   ++e ++++e+l++ + l +  d+     sgG k+++ 
  MMETSP1137-20121227|3517_1  11 RRSQKATRKLIGYCPQHDALQSLMTGREMLRMYARIKQV-PSSEIEDEVEALIQDLDLTKFADRVCGTYSGGNKRKLC 87 
                 445567899**************************9987.889999****************************9876 PP

>> TIGR01187  potA: polyamine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   0.0   1.8e-07   3.3e-05      38     110 ..      15      87 ..       4      89 .] 0.92

  Alignments for each domain:
  == domain 1    score: 20.9 bits;  conditional E-value: 1.8e-07
   TIGR01187  38 paekrsvnvvfqsyaLfPhmtveenvafgLkmrkvpkaeikervkeaLelvqleefakrkpsqlsGGqrqrva 110
                  a ++ ++   q  aL   mt  e +    ++++vp +ei++ v+++++  +l++fa+r     sGG ++++ 
  MMETSP1137-20121227|3517_1  15 KATRKLIGYCPQHDALQSLMTGREMLRMYARIKQVPSSEIEDEVEALIQDLDLTKFADRVCGTYSGGNKRKLC 87 
                 46788899999********************************************************998865 PP

>> TIGR01186  proV: glycine betaine/L-proline transport ATP binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   9.1e-06    0.0017      66     139 ..      14      87 ..       5      89 .] 0.92

  Alignments for each domain:
  == domain 1    score: 15.4 bits;  conditional E-value: 9.1e-06
   TIGR01186  66 revrrkkiamviqkialfPhmtildnislglellkideqerkekalealklvdleeyedryPdelsGGmqqrvG 139
                 ++  rk i++  q+ al   mt  + + +  ++++++  e ++    +++ +dl +++dr     sGG ++++ 
  MMETSP1137-20121227|3517_1  14 QKATRKLIGYCPQHDALQSLMTGREMLRMYARIKQVPSSEIEDEVEALIQDLDLTKFADRVCGTYSGGNKRKLC 87 
                 46789****************************************************************99875 PP

>> TIGR01166  cbiO: cobalt ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   9.9e-06    0.0019     100     138 ..      50      88 ..      10      89 .] 0.92

  Alignments for each domain:
  == domain 1    score: 15.6 bits;  conditional E-value: 9.9e-06
   TIGR01166 100 seaeverrvrealaavdisgleerpthllsgGekkrvai 138
                 +  e+e  v+  ++ +d++++++r + ++sgG+k+++ +
  MMETSP1137-20121227|3517_1  50 PSSEIEDEVEALIQDLDLTKFADRVCGTYSGGNKRKLCV 88 
                 56899******************************9875 PP

>> TIGR02673  FtsE: cell division ATP-binding protein FtsE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   1.3e-05    0.0025      74     147 ..      14      87 ..       4      89 .] 0.89

  Alignments for each domain:
  == domain 1    score: 15.4 bits;  conditional E-value: 1.3e-05
   TIGR02673  74 lpllRrkigvvfqDfkllkdrtvlenvalalevrgkkeeeiqkrveevlelvgledkakalpeelsgGeqqRva 147
                   + R+ ig   q   l + +t  e + +  ++++ +++ei+ +ve++++ ++l++ a+ +  + sgG++ +  
  MMETSP1137-20121227|3517_1  14 QKATRKLIGYCPQHDALQSLMTGREMLRMYARIKQVPSSEIEDEVEALIQDLDLTKFADRVCGTYSGGNKRKLC 87 
                 45678999999999999999999999*******************************************98876 PP

>> TIGR02142  modC_ABC: molybdate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   1.5e-05    0.0028      72     143 ..      16      89 .]       4      89 .] 0.81

  Alignments for each domain:
  == domain 1    score: 14.8 bits;  conditional E-value: 1.5e-05
   TIGR02142  72 pekRrvgyvFqeArLFpHlsvrenLrYGlkraraeerris..eekvielLgiehLleRlpgkLsGGekqRvaig 143
                 + ++ +gy  q+  L + ++ re Lr   +  ++ + +i+   e++i+ L + +  +R  g+ sGG+k +  +g
  MMETSP1137-20121227|3517_1  16 ATRKLIGYCPQHDALQSLMTGREMLRMYARIKQVPSSEIEdeVEALIQDLDLTKFADRVCGTYSGGNKRKLCVG 89 
                 567889*******************85554444444456511679***********************998876 PP

>> TIGR03608  L_ocin_972_ABC: putative bacteriocin export ABC transporter, lactococcin 972 group
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.0   2.8e-05    0.0053      65     144 ..       8      87 ..       2      89 .] 0.94

  Alignments for each domain:
  == domain 1    score: 14.1 bits;  conditional E-value: 2.8e-05
   TIGR03608  65 lkskkaskllreklgylFqnfaLlenetveenlelalklkkkskkekekkkkevlekvglekklkkkiyelsgGekqRva 144
                 l++++++k +r+ +gy  q  aL    t +e l++   +k+   +e e++++ ++++++l+k  ++   + sgG+k ++ 
  MMETSP1137-20121227|3517_1   8 LSTRRSQKATRKLIGYCPQHDALQSLMTGREMLRMYARIKQVPSSEIEDEVEALIQDLDLTKFADRVCGTYSGGNKRKLC 87 
                 567889999******************************************************************99876 PP

>> TIGR03771  anch_rpt_ABC: anchored repeat-type ABC transporter, ATP-binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.1   0.0   6.9e-05     0.013      44     124 ..      14      88 ..       6      89 .] 0.64

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 6.9e-05
   TIGR03771  44 srkgrreiGyvpqrhefawdfpidveqtvlsGragli..Gllrrpkkadf.aavadalervklteladrpvGelsGGqrqrvlv 124
                 ++  r+ iGy pq          d  q++++Gr  l     +++   ++    v++ ++  +lt++adr  G  sGG+++++ v
  MMETSP1137-20121227|3517_1  14 QKATRKLIGYCPQH---------DALQSLMTGREMLRmyARIKQVPSSEIeDEVEALIQDLDLTKFADRVCGTYSGGNKRKLCV 88 
                 45556667777774.........45577888886433002333322233313466667889****************9988765 PP

>> TIGR02211  LolD_lipo_ex: lipoprotein releasing system, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   0.0   5.2e-05    0.0097      69     151 ..       5      87 ..       2      89 .] 0.93

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 5.2e-05
   TIGR02211  69 lsklssneraklrnkklGfiyqfhhlladftalenvamPlliskkskkeakerakellekvglekrinkkpselsGGerqrva 151
                 l+ ls ++  k   k +G+  q   l + +t  e + m + i++   +e +++ ++l++ ++l k +++  +  sGG++++  
  MMETSP1137-20121227|3517_1   5 LHGLSTRRSQKATRKLIGYCPQHDALQSLMTGREMLRMYARIKQVPSSEIEDEVEALIQDLDLTKFADRVCGTYSGGNKRKLC 87 
                 67788999999999999*****99999999***********************************************998866 PP

>> TIGR03740  galliderm_ABC: lantibiotic protection ABC transporter, ATP-binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   0.0     5e-05    0.0094      68     135 ..      17      88 ..       4      89 .] 0.80

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 5e-05
   TIGR03740  68 dlkkiGsliesPalyenltarenlkvrtlllglpesriee....vlkivdlentekkkakqfslGmkqrlGi 135
                   k iG   ++ al   +t re l++ + ++++p+s+ie+    +++ +dl++   + ++ +s G k++l +
  MMETSP1137-20121227|3517_1  17 TRKLIGYCPQHDALQSLMTGREMLRMYARIKQVPSSEIEDeveaLIQDLDLTKFADRVCGTYSGGNKRKLCV 88 
                 445577777888899999******************997522225677899999*************99975 PP

>> TIGR02314  ABC_MetN: D-methionine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.7   0.0   5.4e-05      0.01      79     150 ..      16      87 ..       5      89 .] 0.91

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 5.4e-05
   TIGR02314  79 karrqigmifqhfnllssrtvfgnvalplelentpkekikrkvtellalvglsdkkdsypsnlsggqkqrva 150
                 ++r+ ig   qh  l s  t  + + +   +++ p  +i+  v+ l+  + l++  d      sgg+k+++ 
  MMETSP1137-20121227|3517_1  16 ATRKLIGYCPQHDALQSLMTGREMLRMYARIKQVPSSEIEDEVEALIQDLDLTKFADRVCGTYSGGNKRKLC 87 
                 56888***************************************************************9876 PP

>> TIGR03873  F420-0_ABC_ATP: proposed F420-0 ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.1   0.0     5e-05    0.0093     113     146 ..      53      86 ..       5      89 .] 0.78

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 5e-05
   TIGR03873 113 edaevvdralarvelssladrdlstlsGGerqrv 146
                 e ++ v++++ + +l+++adr + t sGG++++ 
  MMETSP1137-20121227|3517_1  53 EIEDEVEALIQDLDLTKFADRVCGTYSGGNKRKL 86 
                 3445578899*******************99875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (89 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       131  (0.0319356); expected 82.0 (0.02)
Passed bias filter:                      127  (0.0309605); expected 82.0 (0.02)
Passed Vit filter:                        31  (0.00755729); expected 4.1 (0.001)
Passed Fwd filter:                        22  (0.00536324); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              22  [number of targets reported over threshold]
# CPU time: 0.22u 0.19s 00:00:00.41 Elapsed: 00:00:00.36
# Mc/sec: 326.31
//
Query:       MMETSP1137-20121227|3518_1  [L=640]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (640 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       149  (0.0363237); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.16s 00:00:00.60 Elapsed: 00:00:00.55
# Mc/sec: 1535.87
//
Query:       MMETSP1137-20121227|3520_1  [L=198]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (198 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       127  (0.0309605); expected 82.0 (0.02)
Passed bias filter:                      115  (0.0280351); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.15s 00:00:00.35 Elapsed: 00:00:00.35
# Mc/sec: 746.68
//
Query:       MMETSP1137-20121227|3521_1  [L=476]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   1.7e-179  595.1   0.0   1.9e-179  594.9   0.0    1.0  1  TIGR01311 glycerol_kin: glycerol kinase
    5.1e-52  174.8   0.1      6e-52  174.6   0.0    1.1  1  TIGR01312 XylB: xylulokinase
    3.4e-36  122.6   0.0    4.5e-36  122.3   0.0    1.1  1  TIGR01314 gntK_FGGY: gluconate kinase
    1.2e-19   68.4   0.0    1.8e-19   67.9   0.0    1.2  1  TIGR02628 fuculo_kin_coli: L-fuculokinase
    3.3e-13   47.0   0.0    8.1e-09   32.5   0.0    2.5  2  TIGR01315 5C_CHO_kinase: FGGY-family pentulose kinase
    9.2e-13   45.4   0.0    5.4e-12   42.8   0.0    1.9  1  TIGR02627 rhamnulo_kin: rhamnulokinase
    5.7e-05   19.9   0.0    0.00064   16.4   0.0    2.4  3  TIGR01234 L-ribulokinase: L-ribulokinase


Domain annotation for each model (and alignments):
>> TIGR01311  glycerol_kin: glycerol kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  594.9   0.0  3.3e-182  1.9e-179       2     423 ..      56     475 ..      55     476 .] 0.99

  Alignments for each domain:
  == domain 1    score: 594.9 bits;  conditional E-value: 3.3e-182
   TIGR01311   2 liaaiDqGttssraivfdkegeevakaqkelsqifpkegwvEhdpleilesvvkvlaealekleik...aeeiaaiGitnqREttvvWdketgkplvnaivWqdtrtakiveelkeetkeeelrektGLplstYfsatKlrWlldnveevrkaaeegellfGtvdtwliykLtgg....kvhvtdvtNASRtlllnletlkwdeellelfkipkellPeirsssevygeieekellkeevpitgvlGdqqaalvgqlclkkgeaKntYgtGcFlllntGekkviskhglLttvayklggkkptkyalEGsvavaGaavqwlrdnlklikkaeeveklaksvedsegvyfVPafsGLfaPyWdsdArgtivGltrkttkehiaraaleavafqardileamekdagvevkvLkvDGglsknnllmqiqad 423
                 l+++iDqGt+s+r+ivfd++++++a++q+e++qi+p+egw+Ehdp+ei+++v+++++e+l+kle+     ++++++G       t+vWdketgkpl+na+vW d rt+ +veel+++  ++++r+ tGLp+stYfs++Kl Wl  +v+ev++a+ eg++lfGt+dtw+iy+L+gg    +vhvtdvtNASRt+l++l+t +w e  +++++i +++lPeirs+sevy+ ++ +    ++vpi+g++Gdq+aa++gql++kkg+aK+tYgtG+F+l+n+G+k+v s+hglL+tv+yklg ++p++yalEGsvavaG av wlrdn++++ +a+e ++la+sv++segvyfVPafsGLfaPyW++dArg ivGlt  +tk+hiara+l+avafqar++l+ame+d++++++vLkvDGg++  +l+m iqad
  MMETSP1137-20121227|3521_1  56 LVGSIDQGTSSTRFIVFDDKANKIASHQMEHKQIYPREGWCEHDPEEIINNVKECIEETLKKLEAAgysKKDLVSVG-------TIVWDKETGKPLYNAVVWLDLRTSGLVEELSRDYGSDRFRDVTGLPVSTYFSGVKLLWLERHVPEVAAAISEGRALFGTIDTWIIYRLSGGaqdgGVHVTDVTNASRTMLMDLNTCTWHEPTCSALGITTSMLPEIRSCSEVYAPLRCT--SLKGVPIAGCAGDQHAAMLGQLAFKKGQAKCTYGTGAFMLMNVGDKPVKSTHGLLSTVCYKLGPNAPVTYALEGSVAVAGRAVMWLRDNMEMVADAKELQELASSVSSSEGVYFVPAFSGLFAPYWRPDARGCIVGLTLYSTKAHIARATLDAVAFQARELLDAMESDSNTKMRVLKVDGGMTIXELMMSIQAD 475
                 799***********************************************************999888789999999.......8*****************************************************************************************988889************************************************99988..899**********************************************************************************************************************************************************************************************9 PP

>> TIGR01312  XylB: xylulokinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  174.6   0.0     1e-54     6e-52       3     412 ..      60     475 ..      57     476 .] 0.87

  Alignments for each domain:
  == domain 1    score: 174.6 bits;  conditional E-value: 1e-54
   TIGR01312   3 iDlgTssvKallvdekgeviasgsasltvispkpgwsEqdpeewlealeealkellekakeekkeika.isisGQmHglvlLDe.egkvlrpaiLWnDtrtaeeceeleeelgeeelleltgnlalegfTapKllWvrkhepevfariak...vlL.PkDylrykLtgev......vteysDAsGTllfdvkkrewskellkaldleesllPklvessekaGkvreevakklGleegvkvaaGggdnaagAiGlgivkegkvlvslGtSGvvla.vedkaesdpegavhsFchal.pgk..wypl.gvtlsatsalewlkellg.eldveelneeaekvevgaegvlllPylsGERtPhldpqargsliGltanttradlarAvlegvafalrdsldilkelkglkikeirliGGGaksevwrqilad 412
                 iD gTss++ ++ d+k + ias++ +++ i p++gw E dpee ++ ++e+++e l+k +    + k  +s+     g ++ D+  gk+l++a+ W D rt+  +eel+++ g+++++++tg  + + f   KllW+ +h pev a i++   +      ++ y+L g +      vt++  As T+l d ++ +w++  ++al + +s+lP++ + se+ + +r      + l +gv++a+ +gd+ a+ +G  + k+g++ +  Gt   +l+ v dk++++++g +++ c  l p++   y l g +  a+ a+ wl+++++   d +el+e+a+ v+  +egv ++P +sG   P+  p+arg ++Glt  +t+a++arA+l++vaf  r+ ld++++ +++k++ +++ GG +  e+   i+ad
  MMETSP1137-20121227|3521_1  60 IDQGTSSTRFIVFDDKANKIASHQMEHKQIYPREGWCEHDPEEIINNVKECIEETLKKLEAAGYSKKDlVSV-----GTIVWDKeTGKPLYNAVVWLDLRTSGLVEELSRDYGSDRFRDVTGLPVSTYFSGVKLLWLERHVPEVAAAISEgraLFGtIDTWIIYRLSGGAqdggvhVTDVTNASRTMLMDLNTCTWHEPTCSALGITTSMLPEIRSCSEVYAPLRC-----TSL-KGVPIAGCAGDQHAAMLGQLAFKKGQAKCTYGTGAFMLMnVGDKPVKSTHGLLSTVCYKLgPNApvTYALeGSVAVAGRAVMWLRDNMEmVADAKELQELASSVSS-SEGVYFVPAFSGLFAPYWRPDARGCIVGLTLYSTKAHIARATLDAVAFQARELLDAMESDSNTKMRVLKVDGGMTIXELMMSIQAD 475
                 9*****************************************************999987655444430444.....4566675169*************************************************************8633222213569*****98655555569**********************************************998.....334.799******************************887654278999************87622221144441455567899*********66788888888877765.5**********************************************************999999999999998888888888877 PP

>> TIGR01314  gntK_FGGY: gluconate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  122.3   0.0   7.6e-39   4.5e-36       5     423 ..      60     475 ..      56     476 .] 0.85

  Alignments for each domain:
  == domain 1    score: 122.3 bits;  conditional E-value: 7.6e-39
   TIGR01314   5 vdigttstkavlfeengkvvakesigyplytddvdvaeenleeifeavlvtikevskeleeeke..ikfvsfsaqmhsliald.endkpltrlitwadnraakyaekikeekngfeiykrtgtpihpmaplskiiwlkaerkdifqka....akyleikeyifkrlfd......tyvidyslasatgllnlkeldwdkealelagikeeqlpklvetteilknlkeeyakkmgidketkfvigasdgvlsnlgvnaikkgevavtigtsga.irtvidkpktdekg..rifcyaltee...hyviggpvnnggvvlrwlrdellaseietakrlgvdpydvltkiakrvkpgadgllfhpylageraplwnanargsffgltlshkkehmiraalegviynlytvalalvevvdetlkmikatggfaksevwrqllsd 423
                 +d gt+st+ ++f++  + +a++++ ++   +  + +e+++eei++ v   i+e  k+le        +vs  +     i  d e  kpl +++ w d r+ +  e++  +         tg p+       k++wl++  ++++       a +  i ++i++rl +       +v d++ as t l++l++  w + +   +gi+ ++lp++    e+   l+   +   g     ++   a d   + lg  a kkg++  t gt    +  v dkp    +g   + cy l  +    y + g v   g  + wlrd++    +            +l ++a  v+  ++g+ f p ++g  ap w ++arg + gltl   k h++ra+l+ v ++   +  a+    + +++++k  gg++  e+   + +d
  MMETSP1137-20121227|3521_1  60 IDQGTSSTRFIVFDDKANKIASHQMEHKQIYPREGWCEHDPEEIINNVKECIEETLKKLEAAGYskKDLVSVGT-----IVWDkETGKPLYNAVVWLDLRTSGLVEELSRDYGSDRFRDVTGLPVSTYFSGVKLLWLERHVPEVAAAIsegrALFGTIDTWIIYRLSGgaqdggVHVTDVTNASRTMLMDLNTCTWHEPTCSALGITTSMLPEIRSCSEVYAPLRC--TSLKG----VPIAGCAGDQHAAMLGQLAFKKGQAKCTYGTGAFmLMNVGDKPVKSTHGllSTVCYKLGPNapvTYALEGSVAVAGRAVMWLRDNMEM--VA--------DAKELQELASSVS-SSEGVYFVPAFSGLFAPYWRPDARGCIVGLTLYSTKAHIARATLDAVAFQARELLDAMESDSNTKMRVLKVDGGMTIXELMMSIQAD 475
                 9****************************9******************99999999888766521123444433.....445516679********************999877777789*********************9998654111267999*********852222225799***********************************9988888776643..34444....4566678999*********************765256799***99999944579****8763336999****************9743..33........346899*****98.589************************************************99998888888889999***********99888877 PP

>> TIGR02628  fuculo_kin_coli: L-fuculokinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.9   0.0   3.1e-22   1.8e-19       6     415 ..      60     475 ..      55     476 .] 0.80

  Alignments for each domain:
  == domain 1    score: 67.9 bits;  conditional E-value: 3.1e-22
   TIGR02628   6 ldcGatnlraiainekGkivasasvknetkqaiensdyhiwdleeilqklvecaqkvqaevdekdilgiavttfGvdGapfd.eqgnqlypiiswkcprtvpvmenvereldakrlyrrnGiGdysfntlyklrwlkehkpqllekmdk....fvfisslithrlt......GefttditmaGtsmmtdltsrnfdpailealGlseelfpplveaGekiGklrsdlakllGlnadvpvisaGhdtqfalfGsGa.eenqpvlssGtwe.ilmarsqraelslealsaGvtveldsqagl.yn.pavqwlasgvvewvakll..ftaetasdelyk.vlieearkvangakgvvnletdlsslgqgaieGlslfttrGeiyraaleglakklkrrldvlekvsqlkakelvvvGGGsknvlwnqiran 415
                 +d G++  r i  ++k + +as++++   kq    + +   d eei++++ ec ++  +++++       + +  v   + d e g+ ly  + w   rt  ++e+++r+    r+   +G+   ++ +  kl wl++h p++   +++    f  i + i  rl+      G++ td+t a  +m++dl+++ ++     alG++   +p ++   e+   lr        l+ +vp+  +  d   a++G  a ++ q+  + Gt   +lm   +++ +s + l   v  +l  +a + y   +   +a   v w+++ +   ++ +  +el   v   e+   +++ +g   +        +g i Gl+l++t+ +i+ra+l+ +a + ++ ld +e  s+ k + l v GG +  +l   i+a+
  MMETSP1137-20121227|3521_1  60 IDQGTSSTRFIVFDDKANKIASHQME--HKQIYPREGWCEHDPEEIINNVKECIEETLKKLEAAGYSKKDLVS--VGTIVWDkETGKPLYNAVVWLDLRTSGLVEELSRDYGSDRFRDVTGLPVSTYFSGVKLLWLERHVPEVAAAISEgralFGTIDTWIIYRLSggaqdgGVHVTDVTNASRTMLMDLNTCTWHEPTCSALGITTSMLPEIRSCSEVYAPLRCTS-----LK-GVPIAGCAGDQHAAMLGQLAfKKGQAKCTYGTGAfMLMNVGDKPVKSTHGLLSTVCYKLGPNAPVtYAlEGSVAVAGRAVMWLRDNMemVADAKELQELASsVSSSEGVYFVPAFSGL--FAPYWRPDARGCIVGLTLYSTKAHIARATLDAVAFQARELLDAMESDSNTKMRVLKVDGGMTIXELMMSIQAD 475
                 799999****************9875..678889999****************97666666655444333332..3334555156899************************************9999**************9766542222267799999999973333335899******************************************999998754.....44.59***************988456788888888763689999999999****9999999988775423223444566667789998761133444434443313344555555555554..46666677899***************************************99999999999999999999998 PP

>> TIGR01315  5C_CHO_kinase: FGGY-family pentulose kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.7   0.0   2.8e-05     0.017       5     156 ..      60     202 ..      56     225 .. 0.76
   2 !   32.5   0.0   1.4e-11   8.1e-09     356     466 ..     365     476 .]     350     476 .] 0.82

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 2.8e-05
   TIGR01315   5 vdvGtGsaraaivdldG.dvlelaaqkiktwrpssgleeqssdeiWqaicsvvkkvlaeakvdkssvkGiGfdatcslvvldkd.gePlpvskegeaeqniilWldhraeeeaekina.tkhsllkyvGG.kvsvemevPkvlWlkenlpeeleaa 156
                 +d Gt s+r  ++d +  ++ ++ +++ ++  p  g  e++ +ei + + +++ + l + +    s k +    +   +v dk+ g+Pl          n ++Wld r+    e++   +  + ++ v G  vs      k+lWl + +pe+  a+
  MMETSP1137-20121227|3521_1  60 IDQGTSSTRFIVFDDKAnKIASHQMEHKQI-YPREGWCEHDPEEIINNVKECIEETLKKLEAAGYSKKDLV---SVGTIVWDKEtGKPL---------YNAVVWLDLRTSGLVEELSRdYGSDRFRDVTGlPVSTYFSGVKLLWLERHVPEVAAAI 202
                 9************97761566676666555.56778999999*************9996665555555543...334467777767777.........599*********99999975155567777766379***************99987765 PP

  == domain 2    score: 32.5 bits;  conditional E-value: 1.4e-11
   TIGR01315 356 dylnerlkelaaktsa...asvsalvkdlfvypdllGnrsPiadPnlrgviiGldmerdkdslallylatleaiaygtrqivealtaaG.aviksillsGgaaqnellvqlladi 466
                  +l ++++ +a ++++   as +   ++++++p + G  +P+  P++rg i+Gl     k  +a    atl a+a++ r++++a+++   + ++ + + Gg++  el++ + ad+
  MMETSP1137-20121227|3521_1 365 MWLRDNMEMVADAKELqelASSVSSSEGVYFVPAFSGLFAPYWRPDARGCIVGLTLYSTKAHIA---RATLDAVAFQARELLDAMESDSnTKMRVLKVDGGMTIXELMMSIQADA 476
                 5777777666666554111444556789****************************99988877...59*****************9995667888899*************995 PP

>> TIGR02627  rhamnulo_kin: rhamnulokinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.8   0.0   9.2e-15   5.4e-12       3     408 ..      60     474 ..      58     476 .] 0.71

  Alignments for each domain:
  == domain 1    score: 42.8 bits;  conditional E-value: 9.2e-15
   TIGR02627   3 vdlGassGrvilaklenetkkltleeihrfknklvsqdgyevWd....idaleqeillGlkkvkeeGialdslGidtWgvdyvlldk.ngervgdpvsyrdkrtdgvmakvqselgkeaiykktGiqflkfntlyqlkalkeenpdllekvek....llliPdylnyrltG......klvaeytnasttqllnieekkwdkdlleylgvdaewfakitkpgsviGlleeldveevpvvavathdtasavvaaPledenaaylssGtWsliGles.etPitnekalkanitnegG..adgryrvlkni..mG...lWllqrvarerdikdlaelieeakaepafkslinvnddrfinPenmveeikaycretnqavPesaaelarcifdslallyrqvleelaelrgkdisklyivGGGsqnallnqlia 408
                 +d G+ss r i+     +++k+  +++   + ++  ++g    d    i+++++ i + lkk+++ G++++       +v  ++ dk  g+ + ++v + d rt+g+++++  ++g+++    tG+   ++    +l  l+++ p++ + +++    +  i  ++ yrl G      + v++ tnas t l+++++ +w +   + lg+ ++++ +i++  +v   l++++ + vp+   a  d  +a+++  + ++ +a  + Gt +++ ++  + P+ +++ l + +    G  a  +y +   +   G   +Wl +++    d k+l el+++ ++   + + + +  + +  P    ++  + c   + ++  ++a++ar   d++a+  r+ l+ +++  +++++ l + GG +  +l+  + a
  MMETSP1137-20121227|3521_1  60 IDQGTSSTRFIVFDD--KANKIASHQME--HKQIYPREGWCEHDpeeiINNVKECIEETLKKLEAAGYSKKD----LVSVGTIVWDKeTGKPLYNAVVWLDLRTSGLVEELSRDYGSDRFRDVTGLPVSTYFSGVKLLWLERHVPEVAAAISEgralFGTIDTWIIYRLSGgaqdggVHVTDVTNASRTMLMDLNTCTWHEPTCSALGITTSMLPEIRSCSEVYAPLRCTSLKGVPIAGCAG-DQHAAMLGQLAFKKGQAKCTYGTGAFMLMNVgDKPVKSTHGLLSTVCYKLGpnAPVTYALEGSVavAGravMWLRDNMEMVADAKELQELASSVSSSEGVYF-V-PAFSGLFAPYWRPDA--RGC-IVGLTLYSTKAHIARATLDAVAFQARELLDAMESDSNTKMRVLKVDGGMTIXELMMSIQA 474
                 788888888886443..33355544443..345666666666662222556667788889999999998764....4456666666516999*************************************9999999999999999998887653322446999******853333337899*******************************************************987775.777889998888788888887877777776536899999999888888877333456665443311334447888888888888888888777666533322.2.222233333322222..233.246677777777777777777777777777777777777777777777666666665555 PP

>> TIGR01234  L-ribulokinase: L-ribulokinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.0      0.15        89      46      88 ..      88     133 ..      59     138 .. 0.72
   2 ?   -1.1   0.0      0.22   1.3e+02     147     193 ..     172     223 ..     154     240 .. 0.65
   3 !   16.4   0.0   1.1e-06   0.00064     374     458 ..     391     475 ..     368     476 .] 0.81

  Alignments for each domain:
  == domain 1    score: -0.6 bits;  conditional E-value: 0.15
   TIGR01234  46 eaklPad.yalqhPadyievleaaikevl...aelgvdpadvvGiGv 88 
                 +   P++ +  + P + i+ ++ +i+e l   + +g  ++d+v +G+
  MMETSP1137-20121227|3521_1  88 QI-YPREgWCEHDPEEIINNVKECIEETLkklEAAGYSKKDLVSVGT 133
                 33.56543889999999999999999876111456788899999986 PP

  == domain 2    score: -1.1 bits;  conditional E-value: 0.22
   TIGR01234 147 srygGlisseWl.fakvlqiaeedpeiyeaadr...wieaad.WivaqlsGd 193
                 +  +Gl  s ++   k l + ++ pe+++a+     +  + d Wi+++lsG 
  MMETSP1137-20121227|3521_1 172 RDVTGLPVSTYFsGVKLLWLERHVPEVAAAISEgraLFGTIDtWIIYRLSGG 223
                 4455554444441467888888888888887632223444445999999985 PP

  == domain 3    score: 16.4 bits;  conditional E-value: 1.1e-06
   TIGR01234 374 hglvaldWfnGnrsvlvdarlkGvlvgltlatkaeelyralveatafGtrmivetfk.esGvaveellaaGGiaeknplvmqiyad 458
                 +g+  +  f+G  ++    + +G +vgltl  +  ++ ra ++a af +r ++++++ +s   +  l + GG+ +  +l+m i ad
  MMETSP1137-20121227|3521_1 391 EGVYFVPAFSGLFAPYWRPDARGCIVGLTLYSTKAHIARATLDAVAFQARELLDAMEsDSNTKMRVLKVDGGM-TIXELMMSIQAD 475
                 455555678888888888999*********************************9973677888888899999.667899999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (476 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       141  (0.0343735); expected 82.0 (0.02)
Passed bias filter:                      132  (0.0321794); expected 82.0 (0.02)
Passed Vit filter:                        20  (0.00487567); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.51u 0.20s 00:00:00.71 Elapsed: 00:00:00.95
# Mc/sec: 661.33
//
Query:       MMETSP1137-20121227|3522_1  [L=471]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (471 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       180  (0.043881); expected 82.0 (0.02)
Passed bias filter:                      116  (0.0282789); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.18s 00:00:00.53 Elapsed: 00:00:00.55
# Mc/sec: 1130.31
//
Query:       MMETSP1137-20121227|3523_1  [L=363]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   4.5e-205  679.6   0.3   5.1e-205  679.4   0.2    1.0  1  TIGR01039 atpD: ATP synthase F1, beta subunit
   1.1e-157  523.2   0.1   1.2e-157  523.0   0.0    1.0  1  TIGR03305 alt_F1F0_F1_bet: alternate F1F0 ATPase, F1 subunit beta
    1.3e-51  173.5   0.2    1.7e-51  173.1   0.1    1.0  1  TIGR03496 FliI_clade1: flagellar protein export ATPase FliI
    2.1e-51  172.9   0.2    2.9e-51  172.4   0.2    1.1  1  TIGR01026 fliI_yscN: ATPase FliI/YscN family
    3.7e-50  168.6   0.3      5e-50  168.2   0.2    1.1  1  TIGR03498 FliI_clade3: flagellar protein export ATPase FliI
    1.2e-49  167.0   0.1    1.4e-49  166.7   0.1    1.1  1  TIGR02546 III_secr_ATP: type III secretion apparatus H+-transporting two-sector ATPase
    1.9e-49  166.6   0.1    2.5e-49  166.2   0.0    1.0  1  TIGR03497 FliI_clade2: flagellar protein export ATPase FliI
    4.3e-31  105.8   0.0    5.4e-31  105.5   0.0    1.0  1  TIGR01043 ATP_syn_A_arch: ATP synthase archaeal, A subunit
    4.9e-28   95.6   0.2    7.1e-28   95.1   0.2    1.1  1  TIGR01041 ATP_syn_B_arch: ATP synthase archaeal, B subunit
      2e-27   93.9   0.0    2.6e-27   93.5   0.0    1.0  1  TIGR01042 V-ATPase_V1_A: V-type ATPase, A subunit
    1.4e-22   77.7   0.1    3.7e-22   76.3   0.1    1.5  1  TIGR01040 V-ATPase_V1_B: V-type ATPase, B subunit
    7.9e-19   65.5   0.0      9e-19   65.3   0.0    1.0  1  TIGR03324 alt_F1F0_F1_al: alternate F1F0 ATPase, F1 subunit alpha
    5.7e-14   49.5   0.1    7.1e-14   49.2   0.1    1.0  1  TIGR00962 atpA: ATP synthase F1, alpha subunit
    2.2e-06   24.6   0.0    5.6e-06   23.3   0.0    1.6  1  TIGR00767 rho: transcription termination factor Rho
  ------ inclusion threshold ------
      0.023   12.0   0.0      0.044   11.1   0.0    1.4  1  TIGR00157 TIGR00157: ribosome small subunit-dependent GTPase A


Domain annotation for each model (and alignments):
>> TIGR01039  atpD: ATP synthase F1, beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  679.4   0.2  1.9e-207  5.1e-205     111     462 .]       1     360 [.       1     360 [. 1.00

  Alignments for each domain:
  == domain 1    score: 679.4 bits;  conditional E-value: 1.9e-207
   TIGR01039 111 ihrkapsfeeqstkveiletGikvidllapyakGGkiglfGG.aGvGktvliqelinniakehsGlsvfaGvGertreGndlylelkesgvld.......kvalvyGqmneppGarlrvaltgltlaeyfrdeegqdvllfidnifrftqaGsevsallGrlpsavGyqptlatemGelqeritstkkgsitsvqavyvpaddltdpapattfahldattvlsrkiaelGiypavdpldstsrlldpevvGeehyevarevqeilqrykelqdiiailGldelseedklvverarkierflsqpffvaevftGspGkyvklkdtiegfkeileGkyddlpeqafylvGsieevvekakkl 462
                 ihr+ap+f++++tk  ++etGikv+dllapy +GGkiglfGG aGvGktvli+elinnia++h+G+svf GvGertreGndly e+kes v+d       kvalvyGqmneppGar+rv+lt+lt+aeyfrd+++qdvllfidnifrf+qaGsevsallGr+psavGyqptlatemG lqeritstk+gsits+qavyvpaddltdpapattfahldattvlsr +a++Giypavdpldsts++l+pe+vG +hy++a++++e+lqrykelqdiiailGldelseed+l+v+rark+erflsqpffvaevftGspGkyv+l+d+i+gf+++l+G++ddlpeq+fylvG+i+e ++ka+kl
  MMETSP1137-20121227|3523_1   1 IHRTAPAFTDLDTKPSVFETGIKVVDLLAPYKRGGKIGLFGGxAGVGKTVLIMELINNIARAHGGVSVFGGVGERTREGNDLYAEMKESKVIDeeklensKVALVYGQMNEPPGARMRVGLTALTMAEYFRDVNKQDVLLFIDNIFRFVQAGSEVSALLGRMPSAVGYQPTLATEMGVLQERITSTKEGSITSIQAVYVPADDLTDPAPATTFAHLDATTVLSRGLASKGIYPAVDPLDSTSTMLQPEIVGADHYQTAQRIKETLQRYKELQDIIAILGLDELSEEDRLTVARARKVERFLSQPFFVAEVFTGSPGKYVSLADSIDGFNRLLDGEFDDLPEQSFYLVGDINESIAKAEKL 360
                 8***************************************9989*************************************************************************************************************************************************************************************************************************************************************************************************************************987 PP

>> TIGR03305  alt_F1F0_F1_bet: alternate F1F0 ATPase, F1 subunit beta
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  523.0   0.0  4.5e-160  1.2e-157     105     449 .]       1     353 [.       1     353 [. 0.97

  Alignments for each domain:
  == domain 1    score: 523.0 bits;  conditional E-value: 4.5e-160
   TIGR03305 105 vhqappaltrrssksevfetgikaidvlvplerggkaglfgg.agvgktvlltelihnlvsqeegvslfcgigercregeelyremkeagvldn.......tvmvfgqmneppgarfrvglaaltmaeyfrddekkdvlllidnifrfiqagsevsgllgqlpsrlgyqptlgtelaeleeriattedaaitsiqavyvpaddftdpaavhtfshlsaslvlsrkraseglypaidplkstsklatpsivgerhyklarevrrvlaqyeelkdiiamlgleelskedrrvvararrlerfltqpfftteqftglkgktvsledaldgcerilkdefedypekalymigeidea 449
                 +h++ pa+t   +k  vfetgik++d+l+p +rggk glfgg agvgktvl+ eli n+   + gvs+f g+ger reg++ly emke+ v+d+       + +v+gqmneppgar+rvgl+altmaeyfrd +k+dvll+idnifrf+qagsevs llg++ps +gyqptl+te+  l+eri++t++++itsiqavyvpadd+tdpa   tf+hl a+ vlsr  as+g+ypa+dpl+sts +++p+ivg  hy++a++++++l +y+el+diia+lgl+els+edr +varar++erfl+qpff +e ftg  gk vsl+d++dg +r+l++ef+d pe+++y++g+i+e+
  MMETSP1137-20121227|3523_1   1 IHRTAPAFTDLDTKPSVFETGIKVVDLLAPYKRGGKIGLFGGxAGVGKTVLIMELINNIARAHGGVSVFGGVGERTREGNDLYAEMKESKVIDEeklenskVALVYGQMNEPPGARMRVGLTALTMAEYFRDVNKQDVLLFIDNIFRFVQAGSEVSALLGRMPSAVGYQPTLATEMGVLQERITSTKEGSITSIQAVYVPADDLTDPAPATTFAHLDATTVLSRGLASKGIYPAVDPLDSTSTMLQPEIVGADHYQTAQRIKETLQRYKELQDIIAILGLDELSEEDRLTVARARKVERFLSQPFFVAEVFTGSPGKYVSLADSIDGFNRLLDGEFDDLPEQSFYLVGDINES 353
                 79999***********************************9979***********************************************9853333333579******************************************************************************************************************************************************************************************************************************************************985 PP

>> TIGR03496  FliI_clade1: flagellar protein export ATPase FliI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  173.1   0.1   6.3e-54   1.7e-51     119     397 ..      16     304 ..       6     314 .. 0.87

  Alignments for each domain:
  == domain 1    score: 173.1 bits;  conditional E-value: 6.3e-54
   TIGR03496 119 evldvGvrainalltvgkGqrlglfag.sGvGKsvLlgmlara.tea..dvvvvaLiGERgREvkefie.....knLgeeglkrs..vvvaatadespllrlraaalataiaeyfrdqg.kdvLllmDSltRfAmAqReialaiGEppatkgYppsvfaklpkLvEraGngkegkGsitafytvLvegddqqdpiadaaraiLDGHivLsRelaeaghyPaidieaSiSRvm.kkvvseehlkaarklkqllsryeenrdlisigaYkkGsdpelDeaiklvpklekflqqe 397
                 +v+++G+++++ l +  +G ++glf g +GvGK+vL+  l+ + ++a   v v + +GER+RE +++       k + ee l++s   +v    +e+p  r+r   +a ++aeyfrd + +dvLl++D + Rf +A  e++  +G  p + gY p+  +++  L Er  +  +++Gsit++ +v v  dd +dp   ++ a LD   vLsR la++g+yPa+d ++S S ++ +++v ++h+++a+++k++l ry+e +d+i+i +  + s+++   ++++  k+e+fl+q 
  MMETSP1137-20121227|3523_1  16 SVFETGIKVVDLLAPYKRGGKIGLFGGxAGVGKTVLIMELINNiARAhgGVSVFGGVGERTREGNDLYAemkesKVIDEEKLENSkvALVYGQMNEPPGARMRVGLTALTMAEYFRDVNkQDVLLFIDNIFRFVQAGSEVSALLGRMPSAVGYQPTLATEMGVLQERITS--TKEGSITSIQAVYVPADDLTDPAPATTFAHLDATTVLSRGLASKGIYPAVDPLDSTSTMLqPEIVGADHYQTAQRIKETLQRYKELQDIIAILGLDELSEED-RLTVARARKVERFLSQP 304
                 5799*********************9967******97665543144422699***********98875411122457888888762245888999**********************76268*********************************************998..59*******************************************************876269****************************98887766554.35789999999999996 PP

>> TIGR01026  fliI_yscN: ATPase FliI/YscN family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  172.4   0.2     1e-53   2.9e-51     145     421 ..      16     304 ..      10     315 .. 0.88

  Alignments for each domain:
  == domain 1    score: 172.4 bits;  conditional E-value: 1e-53
   TIGR01026 145 evlstGvrsidalltvgkGqrlGifaG.sGvGkstL.lGmiaratea..dvnvialiGerGrevkefie.....kdLgeeglkrs..vvvvatsDespllrlkgayvataiaeyfrdqG.kdvlllmDsvtrfakaqreigLaaGepPatkGytPsvfsllpklleraGasekGsitafytvLveGDDlnePiaDevrailDGhivLsralaerglyPaidvlasisrllk.aivseekkkavrkfrellskykenedLiriGaYkkGsdkelDkaikkleklerflkqd 421
                 +v++tG++++d l +  +G ++G+f G +GvGk +L + +i   ++a   v+v + +Ger re ++  +     k + ee+l++s   +v    +e+p +r++  ++a ++aeyfrd   +dvll++D + rf +a  e++  +G  P++ Gy P+  +++  l er  ++++Gsit++ +v v  DDl++P   ++ a lD   vLsr la++g+yPa+d l+s+s +l+ +iv++++++++++++e l  yke +d+i i    + s+++   +++   k+erfl+q 
  MMETSP1137-20121227|3523_1  16 SVFETGIKVVDLLAPYKRGGKIGLFGGxAGVGKTVLiMELINNIARAhgGVSVFGGVGERTREGNDLYAemkesKVIDEEKLENSkvALVYGQMNEPPGARMRVGLTALTMAEYFRDVNkQDVLLFIDNIFRFVQAGSEVSALLGRMPSAVGYQPTLATEMGVLQERITSTKEGSITSIQAVYVPADDLTDPAPATTFAHLDATTVLSRGLASKGIYPAVDPLDSTSTMLQpEIVGADHYQTAQRIKETLQRYKELQDIIAILGLDELSEED-RLTVARARKVERFLSQP 304
                 5799**********************978*****9845677775555226*************9997641222246889999876325688999***********************7616899*******************************************************************************************************987549****************************96666666554.346788999*****996 PP

>> TIGR03498  FliI_clade3: flagellar protein export ATPase FliI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  168.2   0.2   1.8e-52     5e-50     123     399 ..      17     303 ..       4     311 .. 0.86

  Alignments for each domain:
  == domain 1    score: 168.2 bits;  conditional E-value: 1.8e-52
   TIGR03498 123 klktGvrvidlfltlcrGqRlGifaG.sGvGkstllsmlara...aaaDvvvialvGeRGRevrefled....d.lgeeglkrs..vvvvatsDesplmRrkaayvalaiaeyfRdqg.kdvllllDsvtRfakaqReialaageppvarGYtpsvfselPrLLeRaGpGaegkGsitglftvLvdgDdhnePvaDavrgilDGhivldRaiaergryPainvlksvsRl.akkvlspeekklvkrlrallaryeetedlirlGayrkGsdaevDeavklvpkieeflkq 399
                  ++tG++v+dl+++  rG ++G+f G +GvGk++l+  l+++   a+  v+v + vGeR Re +++  +    + + ee+l+ s   +v    +e+p +R++   +al++aeyfRd + +dvll++D + Rf +a  e++   g  p a GY p+  +e+  L eR    ++++Gsit++ +v v +Dd ++P   ++ + lD   vl+R +a +g yPa+++l s+s +  ++++ +++ ++ +r+++ l+ry+e +d+i + +  + s+++    v+   k+e+fl+q
  MMETSP1137-20121227|3523_1  17 VFETGIKVVDLLAPYKRGGKIGLFGGxAGVGKTVLIMELINNiarAHGGVSVFGGVGERTREGNDLYAEmkesKvIDEEKLENSkvALVYGQMNEPPGARMRVGLTALTMAEYFRDVNkQDVLLFIDNIFRFVQAGSEVSALLGRMPSAVGYQPTLATEMGVLQERIT--STKEGSITSIQAVYVPADDLTDPAPATTFAHLDATTVLSRGLASKGIYPAVDPLDSTSTMlQPEIVGADHYQTAQRIKETLQRYKELQDIIAILGLDELSEED-RLTVARARKVERFLSQ 303
                 589**********************966******98777665221345799***********9887543111132567777655215678899***********************76268*********************************************99..689*******************************************************86157999*************************987776655443.3467777777777777 PP

>> TIGR02546  III_secr_ATP: type III secretion apparatus H+-transporting two-sector ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  166.7   0.1   5.2e-52   1.4e-49     127     404 ..      15     304 ..       1     312 [. 0.87

  Alignments for each domain:
  == domain 1    score: 166.7 bits;  conditional E-value: 5.2e-52
   TIGR02546 127 eqplalGvraiDglltvgeGqRiGifae.aGvGkstLlsmiarg...akadvivlaLiGeRGRevre.fieke....lgeek..rkrsvlvvstsdrsslerlkaayvataiaeyfRdqgk.kvllllDsltRfaralreigLaaGepparrgyppsvfsslprlleRaGasekGsitalYtvLvegddmndpiadevrsilDGhivLsrklaernhyPaiDvlaslsRvlk.kvvskehkkaaaklrellakykevellirlGeYkkGsdkeaDkaikkldeikkflrqs 404
                    + +G++++D l    +G +iG+f++ aGvGk+ L+ +++++   a+  v v++ +GeR Re ++ + e +    ++eek   ++  lv    +++   r++ +++a ++aeyfRd  k +vll++D + Rf +a  e++   G  p++ gy p++ +++  l eR  ++++Gsit++ +v v  dd +dp    + + lD   vLsr la+++ yPa+D l s s +l+ ++v ++h+++a++++e l++yke++++i +    + s+++    +++  ++++fl+q 
  MMETSP1137-20121227|3523_1  15 PSVFETGIKVVDLLAPYKRGGKIGLFGGxAGVGKTVLIMELINNiarAHGGVSVFGGVGERTREGNDlYAEMKeskvIDEEKleNSKVALVYGQMNEPPGARMRVGLTALTMAEYFRDVNKqDVLLFIDNIFRFVQAGSEVSALLGRMPSAVGYQPTLATEMGVLQERITSTKEGSITSIQAVYVPADDLTDPAPATTFAHLDATTVLSRGLASKGIYPAVDPLDSTSTMLQpEIVGADHYQTAQRIKETLQRYKELQDIIAILGLDELSEEDR-LTVARARKVERFLSQP 304
                 56799*********************7549***********9996445678*************886334432111134454114678899***************************65527*********************************************************************************************************988549***************************9866655554433.47899999*****996 PP

>> TIGR03497  FliI_clade2: flagellar protein export ATPase FliI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  166.2   0.0   9.2e-52   2.5e-49     120     394 ..      17     303 ..       6     312 .. 0.88

  Alignments for each domain:
  == domain 1    score: 166.2 bits;  conditional E-value: 9.2e-52
   TIGR03497 120 vlevgvkaidglltvGkGqrvGifag.sGvGkstl.lgmiarnaka..dinviaLvGerGrevrefi....e.kdLgeeGlkksvv..vvatsdqpallrlkaalvataiaeyfrdqG.kkvllmmDsvtrfamaqrevglavgepPttkGytpsvfsllpklleraGksekGsitglytvLvdgDdlnePiaDavrgilDGhivLsreLaeknhyPaidvlksvsrvme.eivseehkelaeklrellavykeaedlikigaykkgsnkkideaiekkekinkfLkq 394
                 v+e+g+k++d l    +G ++G+f g +GvGk++l + +i   a+a   + v + vGer re +++     e k + ee l+ s v  v    ++p   r++  l+a ++aeyfrd   ++vll +D + rf +a  ev+   g  P++ Gy p++ + +  l er  ++++Gsit++ +v v +Ddl +P + +  + lD   vLsr La+k+ yPa+d l+s s +++ eiv ++h ++a++++e+l+ yke +d+i i    + s++    ++    k+++fL q
  MMETSP1137-20121227|3523_1  17 VFETGIKVVDLLAPYKRGGKIGLFGGxAGVGKTVLiMELINNIARAhgGVSVFGGVGERTREGNDLYaemkEsKVIDEEKLENSKValVYGQMNEPPGARMRVGLTALTMAEYFRDVNkQDVLLFIDNIFRFVQAGSEVSALLGRMPSAVGYQPTLATEMGVLQERITSTKEGSITSIQAVYVPADDLTDPAPATTFAHLDATTVLSRGLASKGIYPAVDPLDSTSTMLQpEIVGADHYQTAQRIKETLQRYKELQDIIAILGLDELSEEDR-LTVARARKVERFLSQ 303
                 799*********************9867****99834566655555227*************999752222224578999998854227788999*********************76258*********************************************************************************************************998659*****************************99999886653.456677899999998 PP

>> TIGR01043  ATP_syn_A_arch: ATP synthase archaeal, A subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  105.5   0.0     2e-33   5.4e-31     209     524 ..      19     325 ..       2     338 .. 0.87

  Alignments for each domain:
  == domain 1    score: 105.5 bits;  conditional E-value: 2e-33
   TIGR01043 209 vtGqrildtlfpiakGGtaai.pGpfGsGktvtqqslak.w..sdaeivvyiGcGerGnemtevleefpeledpktGkpllertvliantsnmpvaareasiytGitiaeyfrdmG.ydvalvadstsrwaealreisgrleempgeeGypaylasrlaefyeraGrvktlgseeregsvtvvgavsppGGdfsepvtqntlrivkvfwaldaklaerrhfpainwlqsyslyvdsvedwfaenvdeewrelrdealellqkeaelqeivrlvGsdalpekeklvlevarlireaflkqnafdevdtysspekqvkilkvi 524
                  tG++++d l p  +GG   +  G  G Gktv   +l +    ++  + v+ G Ger  e  +   e+ e + +   k   ++  l+    n p  ar     t +t+aeyfrd    dv+l  d   r+ +a  e+s+ l  mp+  Gy   la+ +    er       +s+ +egs+t + av  p  d+++p    t   +     l   la++  +pa++ l+s s   +       e v  ++ ++ +++ e+lq+ +elq+i+ ++G d+l+e+++l++  ar + e fl q  f       sp k v++   i
  MMETSP1137-20121227|3523_1  19 ETGIKVVDLLAPYKRGGKIGLfGGXAGVGKTVLIMELINnIarAHGGVSVFGGVGERTREGNDLYAEMKESKVIDEEKLENSKVALVYGQMNEPPGARMRVGLTALTMAEYFRDVNkQDVLLFIDNIFRFVQAGSEVSALLGRMPSAVGYQPTLATEMGVLQERI------TST-KEGSITSIQAVYVPADDLTDPAPATTFAHLDATTVLSRGLASKGIYPAVDPLDSTSTMLQ------PEIVGADHYQTAQRIKETLQRYKELQDIIAILGLDELSEEDRLTVARARKV-ERFLSQPFFVAEVFTGSPGKYVSLADSI 325
                 49***************977615678******99888642411455699********9999999999999998888888888999*****************************86379***************************************9999985......333.78****************************************************998654......47899999999**********************************999987.7899998775433334555666555555 PP

>> TIGR01041  ATP_syn_B_arch: ATP synthase archaeal, B subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.1   0.2   2.6e-30   7.1e-28     125     412 ..      18     303 ..       9     308 .. 0.88

  Alignments for each domain:
  == domain 1    score: 95.1 bits;  conditional E-value: 2.6e-30
   TIGR01041 125 iqtGisaidGlntlvrGqklpifsg.sGlphnelalqiarq.akvrgeesefavvfaalGitaeeanffkkdfektGale.......ravvflnladdpaverivtprlaltvaeylafekdlhvlviltdltnycealreisaareevpGrrGypGylytdlatlyeraGrvkGkkGsitqipiltmpdddithpipdltGyiteGqivlsrelhrkGiyppinvlpslsrlmkdGiGeGktredhkdvsdqlyaayaegrdlrdlvaivGeealserdrkylkfadefekkfvkq 412
                  +tGi  +d l    rG k+  f g +G+ +  l +++ ++ a+ +g       vf+ +G ++ e n +  +++++  ++       +++++    ++p+  r+    +alt+aey+   +   vl  + ++  +++a  e+sa    +p   Gy   l t++  l er      k+Gsit i  + +p dd+t p p  t    +   vlsr l +kGiyp ++ l s s +++  i       dh + ++++  +  + ++l+d++ai+G + lse dr  +  a + e +f++q
  MMETSP1137-20121227|3523_1  18 FETGIKVVDLLAPYKRGGKIGLFGGxAGVGKTVLIMELINNiARAHGG----VSVFGGVGERTREGNDLYAEMKESKVIDeeklensKVALVYGQMNEPPGARMRVGLTALTMAEYFRDVNKQDVLLFIDNIFRFVQAGSEVSALLGRMPSAVGYQPTLATEMGVLQERIT--STKEGSITSIQAVYVPADDLTDPAPATTFAHLDATTVLSRGLASKGIYPAVDPLDSTSTMLQPEIV----GADHYQTAQRIKETLQRYKELQDIIAILGLDELSEEDRLTVARARKVE-RFLSQ 303
                 58*********************9857999998888766541444443....45899999999999998888888776642222233466777889**********************9999***********************************************76..679**************************9*****************************9998774....57************************************9999998887.57666 PP

>> TIGR01042  V-ATPase_V1_A: V-type ATPase, A subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   93.5   0.0   9.4e-30   2.6e-27     210     506 ..      18     304 ..       2     313 .. 0.87

  Alignments for each domain:
  == domain 1    score: 93.5 bits;  conditional E-value: 9.4e-30
   TIGR01042 210 lltgqrvldalfpsvqggttaip.gafgcgktvisqsl.skys..nsdvivyvgcgergnemaevlrdfpeltveldgreesimkrttlvantsnmpvaareasiytgitlaeyfrdmgy.nvsmladstsrwaealreisgrlaempadsgypaylgarlasfyeragrvkclgsperegsvsivgavsppggdfsdpvtsatlgivqvfwgldkklaqrkhfpsvnwlisyskylkaleefyekeypefvelrtkvkeilqeeeeleeivqlvgkdalaesdkitlevaklikedflqqn 506
                 + tg +v+d l p  +gg + +  g  g gktv+   l    +     v v+ g ger  e  ++  ++ e +v  + + e+   + +lv    n p  ar     t +t+aeyfrd+ + +v ++ d   r+ +a  e+s  l+ mp+  gy   l++ +  + er           +egs++ + av  p  d++dp  ++t++  +    l + la +  +p+v+ l s s  l+   +  e   ++  +  +++ke lq+ +el++i+ ++g d l+e+d++t+  a+ + e fl q 
  MMETSP1137-20121227|3523_1  18 FETGIKVVDLLAPYKRGGKIGLFgGXAGVGKTVLIMELiNNIAraHGGVSVFGGVGERTREGNDLYAEMKESKVIDEEKLEN--SKVALVYGQMNEPPGARMRVGLTALTMAEYFRDVNKqDVLLFIDNIFRFVQAGSEVSALLGRMPSAVGYQPTLATEMGVLQERIT-------STKEGSITSIQAVYVPADDLTDPAPATTFAHLDATTVLSRGLASKGIYPAVDPLDSTSTMLQ---P--EIVGADHYQTAQRIKETLQRYKELQDIIAILGLDELSEEDRLTVARARKV-ERFLSQP 304
                 569****************99861578******77666144541145678999****************9987765555554..689******************************986268999**************************************99965.......4689**************************************************99987654...3..67788899999********************************9999876.5677775 PP

>> TIGR01040  V-ATPase_V1_B: V-type ATPase, B subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.3   0.1   1.3e-24   3.7e-22     124     424 ..      17     306 ..      12     314 .. 0.86

  Alignments for each domain:
  == domain 1    score: 76.3 bits;  conditional E-value: 1.3e-24
   TIGR01040 124 miqtgisaidvmnsiargqkiplfsa.aglphn....eiaaqicrqaglvkksekdvkdekeenfaivfaamgvnletarffkqdfeengslervtlflnlandptieriitprlalttaeylayekekhvlviltdmssyadalrevsaareevpgrrgfpgymytdlatiyeragrvegrngsitqipiltmpnddithpipdltgyitegqiyvdrqlhnrqiyppinvlpslsrlmksaigegmtrkdhsdvsnqlyakyaigkdvaamkavvgeealssedllyleflekfekkfiaqgay 424
                 +++tgi  +d +    rg ki lf + ag+ +     e+  +i+r  g v+     v +   e    ++a    +++ ++ + ++  en    +v+l     n+p   r+     alt+aey+    ++ vl+ + ++  +++a  evsa    +p+  g+   + t++ ++ er    + ++gsit i  + +p dd+t p p  t    +    + r l  + iyp ++ l s s +++  i       dh + ++++  +    k+++ + a++g + ls+ed+l +    k e+ f++q  +
  MMETSP1137-20121227|3523_1  17 VFETGIKVVDLLAPYKRGGKIGLFGGxAGVGKTvlimELINNIARAHGGVSVFGG-VGERTRE-GNDLYA----EMKESKVIDEEKLEN---SKVALVYGQMNEPPGARMRVGLTALTMAEYFRDVNKQDVLLFIDNIFRFVQAGSEVSALLGRMPSAVGYQPTLATEMGVLQERIT--STKEGSITSIQAVYVPADDLTDPAPATTFAHLDATTVLSRGLASKGIYPAVDPLDSTSTMLQPEI----VGADHYQTAQRIKETLQRYKELQDIIAILGLDELSEEDRLTVARARKVER-FLSQPFF 306
                 6799********************7537776642233777888898888886555.4333333.233455....556677776655555...579999999**************************************************************************86..5789************************99999**************************999876....567*****************************************999996.7777655 PP

>> TIGR03324  alt_F1F0_F1_al: alternate F1F0 ATPase, F1 subunit alpha
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.3   0.0   3.3e-21     9e-19     129     423 ..       1     304 [.       1     347 [. 0.86

  Alignments for each domain:
  == domain 1    score: 65.3 bits;  conditional E-value: 3.3e-21
   TIGR03324 129 ierpapeimdrapvtvplqtGlkvvdalipiGrGqrelil.GdrqtGktaiaidtiln.qkdknvlcvycaiGqrasavakvvaelrekgald.....y.tiv.vvtegndppGlqyiapyaatsiaeyfmeq.GrdvlivyddltkharayrelslllrrppGreafpGdifyvhsrllersthlrkerGGGsltalpiieteaqnisayiptnlisitdGqiylspelfelGvlpavdvGksvsrvGG.kaqlaayravaGdlklayaqfeeleaf.arfg.arldeetrkvierGrrirailkqt 423
                 i r ap+  d  +    ++tG+kvvd l p  rG +  ++ G    Gkt + ++ i n  + +  + v+  +G+r+     + ae++e + +d        ++ v ++ n+ppG +     +a ++aeyf +   +dvl+  d++ +  +a  e+s ll r p    +   +      l er t  +     Gs+t++  +   a +++   p+   +  d    ls  l ++G+ pavd   s s +       a + + a ++k +  +++el+   a +g   l ee r ++ r r++   l q+
  MMETSP1137-20121227|3523_1   1 IHRTAPAFTDLDTKPSVFETGIKVVDLLAPYKRGGKIGLFgGXAGVGKTVLIMELINNiARAHGGVSVFGGVGERTREGNDLYAEMKESKVIDeekleNsKVAlVYGQMNEPPGARMRVGLTALTMAEYFRDVnKQDVLLFIDNIFRFVQAGSEVSALLGRMPSAVGYQPTLATEMGVLQERITSTK----EGSITSIQAVYVPADDLTDPAPATTFAHLDATTVLSRGLASKGIYPAVDPLDSTSTMLQpEIVGADHYQTAQRIKETLQRYKELQDIiAILGlDELSEEDRLTVARARKVERFLSQP 304
                 568888888888888889***************9886555166789***9999998884467789**********************9988762222222344156889*********************986157*********************************99999999*****99765....49***********************************************99999987651555566888999************87626666357999**************99997 PP

>> TIGR00962  atpA: ATP synthase F1, alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.2   0.1   2.6e-16   7.1e-14     130     424 ..       3     304 ..       1     310 [. 0.84

  Alignments for each domain:
  == domain 1    score: 49.2 bits;  conditional E-value: 2.6e-16
   TIGR00962 130 kkaPgvierksvkePlqtGikaidaliPiGrGqr.eliiGdrqtGktavaidtiinqkdskkdvkcvyvaiGqkestvaqvveklee.....kgaleytiv..vaasasdsaslqylaPyagvalaeyfrd.kgkdaliiyddlskqavayrqlslllrrPPGreayPGdvfylhsrlleraaklsdekGaGsltalPiietqagdvsayiPtnvisitdGqiflesdlfnsGirPainvGlsvsrvGgaaqikaik.kvaGslrlelaqyreleafsqf.a.sdldeatkkqlerGkrlvellkqe 424
                 ++aP+  +  +    ++tGik +d l P  rG +  l  G    Gkt + ++ i n   ++   + v+  +G ++    ++  +++e     ++ le++ v  v  + +++ + +     ++ ++aeyfrd + +d+l+  d++ +  +a  ++s ll r P    y   +      l er +       +Gs+t++  +   a+d++   P+   +  d    l+  l  +Gi Pa++   s s +     + a   + a  ++  l +y+el+   +  +  +l e  + +++r +++  +l q+
  MMETSP1137-20121227|3523_1   3 RTAPAFTDLDTKPSVFETGIKVVDLLAPYKRGGKiGLFGGXAGVGKTVLIMELINNIARAH-GGVSVFGGVGERTREGNDLYAEMKEskvidEEKLENSKValVYGQMNEPPGARMRVGLTALTMAEYFRDvNKQDVLLFIDNIFRFVQAGSEVSALLGRMPSAVGYQPTLATEMGVLQERITST----KEGSITSIQAVYVPADDLTDPAPATTFAHLDATTVLSRGLASKGIYPAVDPLDSTSTMLQPEIVGADHyQTAQRIKETLQRYKELQDIIAIlGlDELSEEDRLTVARARKVERFLSQP 304
                 5677777777778889***************9772566677889**999988887777655.66789******99888777776665111114566666543378899**********************93456899999**************************999999999999998754....469*****************************************************999888887754278889***********987654242468999999999999999999986 PP

>> TIGR00767  rho: transcription termination factor Rho
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.3   0.0     2e-08   5.6e-06     156     393 ..      22     274 ..       9     288 .. 0.78

  Alignments for each domain:
  == domain 1    score: 23.3 bits;  conditional E-value: 2e-08
   TIGR00767 156 trvldliaPiGkGqr.alivaPPkaGktvllqeianaitrnnpevelivlliderPeevtdmqrsv..............kgevvastfdepasrhvqvaelviekakrlve.kkkdvvilldsitrlarayntvsPasGkilsGGvdatalhkPkrflGaarnieeGGsltiiatalvetGskmdevifeefkgtGnaelkldrklaerrvfPaidikks.Gtrkeelllskeelekvwvlrkvlsgldsveai 393
                  +v+dl+aP  +G + +l       Gktvl+ e+ n i+r +  v ++   + er  e  d+  ++              k  +v   ++ep+   ++v   ++  a+   + +k+dv++++d i r+ +a  +vs   G++ s    + +l      l       + Gs+t i +  v +   +d      f    +a  +l+r la + ++Pa+d   s  t  +  ++  ++++    ++++l+  ++ + i
  MMETSP1137-20121227|3523_1  22 IKVVDLLAPYKRGGKiGLFGGXAGVGKTVLIMELINNIARAHGGVSVF-GGVGERTREGNDLYAEMkeskvideeklensKVALVYGQMNEPPGARMRVGLTALTMAEYFRDvNKQDVLLFIDNIFRFVQAGSEVSALLGRMPSAVGYQPTLATEMGVLQERITSTKEGSITSIQAVYVPADDLTDPAPATTFAHL-DATTVLSRGLASKGIYPAVDPLDStSTMLQPEIVGADHYQTAQRIKETLQRYKELQDI 274
                 589*******9975439999999********************99865.578999999877654441111123222222223345667899**999999988888887655425779*************************998666777888888888877888899*****************9999998765.56678***************65551577777778888888888888888877776554 PP

>> TIGR00157  TIGR00157: ribosome small subunit-dependent GTPase A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00016     0.044     123     179 ..      36      93 ..      22     105 .. 0.90

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 0.00016
   TIGR00157 123 risvfaGqSGVGKSSLiNlldpevkqkvkevseklklGkhTTtsvelfhl.qgGliiD 179
                 +i +f G +GVGK  Li  l  ++ ++   vs   + G  T     l+   +   +iD
  MMETSP1137-20121227|3523_1  36 KIGLFGGXAGVGKTVLIMELINNIARAHGGVSVFGGVGERTREGNDLYAEmKESKVID 93 
                 7899*************************************99999998768888887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (363 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       172  (0.0419308); expected 82.0 (0.02)
Passed bias filter:                      158  (0.0385178); expected 82.0 (0.02)
Passed Vit filter:                        37  (0.00901999); expected 4.1 (0.001)
Passed Fwd filter:                        15  (0.00365675); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.52u 0.17s 00:00:00.69 Elapsed: 00:00:00.52
# Mc/sec: 921.39
//
Query:       MMETSP1137-20121227|3524_1  [L=557]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.2e-62  207.2   0.0      1e-61  206.9   0.0    1.1  1  TIGR01357 aroB: 3-dehydroquinate synthase


Domain annotation for each model (and alignments):
>> TIGR01357  aroB: 3-dehydroquinate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  206.9   0.0   2.5e-65     1e-61       3     332 ..      67     416 ..      65     429 .. 0.88

  Alignments for each domain:
  == domain 1    score: 206.9 bits;  conditional E-value: 2.5e-65
   TIGR01357   3 vkvgegllkklveelae......kasklvvitdeeveklvaekleealkslgvevlvlvvp.........dgeesKsletvaklldqlleeklerksvlvaiGGGvvgDlaGFvAatylRGirlvqvPTtllamvDssvGGKtginlplgkNliGafyqPkaVlidlkvletlperelreGmaEviKhgliadaelfeeleknekl..llklaelealeelikrsievKaevVeeDekesglRalLNfGHtlgHaiEallkyk....lsHGeaVaiGmvveaklseklgllkaellerlvallkklglptklkkklsveellkallkDKKnegskiklvlleeiGkaalas 332
                 v +++g+l++l e+ +e      ++ + +++td   ++l+a k+ + l s+g +v++lvvp         + e sK++e++ +l+d+++e++++++s+++++GGGvv  + G +Aa+ +RGi lv++ Tt ++++D+++  K gin+plgkNl+G+++  ++++id+++++tl++r+l +G++E++Khg+ + +el++ + +  ++   +kl + + le + k +ie+K    ++ e+     ++  +GH++gHa+E l+ ++    + HGeaVaiGmvv a+++  +gl++++ ++++ +++k++glp  ++ +++ve +l +++ DK +  +k ++ l+ ++G  a++ 
  MMETSP1137-20121227|3524_1  67 VLIKNGILSELKEYGKEivparcHEASNYLVTDAICDELYAGKVMAGLCSAGLKVQKLVVPvmtdesgetSTEPSKTREVFDQLVDEIIEAGINKNSCIISLGGGVVNNICGVLAAVLYRGITLVHLTTTTMGAFDAAIDFKQGINHPLGKNLLGTYWPASTIVIDPTTFRTLSQRHLLNGISEALKHGFCQSRELTDLIVQPLAQhgASKLRDPAYLEAVCKACIEIKVPTLTHYEESDYNEMCPQYGHAIGHAVEHLSWHDgrepMLHGEAVAIGMVVSAEVAFLMGLCDEQCVREHYEFVKATGLPAFVPASMTVEDILYKMSFDKHH-VKKPTMGLPARMGTFAKNG 416
                 67777777777666555554554458899*****************99999*99999999755554322234668***************************************************************************************************************************998876653355556778999999*********999988888888999************997777899*************************************************************865.5678888999999887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (557 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       125  (0.0304729); expected 82.0 (0.02)
Passed bias filter:                       97  (0.023647); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.16s 00:00:00.55 Elapsed: 00:00:00.49
# Mc/sec: 1500.37
//
Query:       MMETSP1137-20121227|3525_1  [L=42]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (42 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        84  (0.0204778); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.15s 00:00:00.26 Elapsed: 00:00:00.31
# Mc/sec: 178.82
//
Query:       MMETSP1137-20121227|3526_1  [L=174]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (174 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        33  (0.00804486); expected 82.0 (0.02)
Passed bias filter:                       30  (0.00731351); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.11s 00:00:00.27 Elapsed: 00:00:00.82
# Mc/sec: 280.07
//
Query:       MMETSP1137-20121227|3527_1  [L=407]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (407 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       277  (0.067528); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.16s 00:00:00.48 Elapsed: 00:00:00.48
# Mc/sec: 1119.16
//
Query:       MMETSP1137-20121227|3528_1  [L=140]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-15   55.3   6.6    2.8e-15   54.3   4.6    1.4  1  TIGR00980 3a0801so1tim17: mitochondrial import inner membrane translocase subunit tim17
    1.3e-12   45.3   2.0    1.7e-12   45.0   1.4    1.2  1  TIGR00983 3a0801s02tim23: mitochondrial import inner membrane translocase subunit


Domain annotation for each model (and alignments):
>> TIGR00980  3a0801so1tim17: mitochondrial import inner membrane translocase subunit tim17
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.3   4.6   1.4e-18   2.8e-15       5     129 ..       6     136 ..       3     138 .. 0.82

  Alignments for each domain:
  == domain 1    score: 54.3 bits;  conditional E-value: 1.4e-18
   TIGR00980   5 trePcPyr..ilddiGgafamGtiGGaifqaikG......frnspkGeklvgalaaiktrapvlGgnfavwGGlfstidcalvavrkkedPwnsivsGaltGallavrsGpkamagsailgavllalieGvGl 129
                 +re c ++  i   +Gga   G++ Ga+   ++         n p+ e+++  ++++ t++   G n+ v G +fs  +c + + r++ d wn+i  G ltG++la+ sGp+ama +++  a + a i+ +G+
  MMETSP1137-20121227|3528_1   6 ARESCTMQaiISGVVGGAA--GMVLGAVLTPFNSsmqqleTENLPMKEQMRRGMKEVGTQSRSWGKNLLVIGAVFSCTECFVEKTRGRSDKWNAIGGGCLTGGILAASSGPQAMAIGCAGFAAFSAAIDALGI 136
                 6888876432555667765..44555555444431111224688999999********************************************************************999999999999997 PP

>> TIGR00983  3a0801s02tim23: mitochondrial import inner membrane translocase subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.0   1.4   8.1e-16   1.7e-12      44     145 ..      24     127 ..       5     131 .. 0.84

  Alignments for each domain:
  == domain 1    score: 45.0 bits;  conditional E-value: 8.1e-16
   TIGR00983  44 tGlaiGal.vGlreGlketes.isttklrlnriLnsvtrrGallgnslGilaLvYnainslieaargkedvansvaAGaltGalykstrGlraiavssalvata 145
                 +G+++Ga+ + ++  ++++e  + + k ++ r + +v+ + + +g +l +++ v++  +  +e++rg+ d++n+++ G ltG +  ++ G +a+a++ a  a+ 
  MMETSP1137-20121227|3528_1  24 AGMVLGAVlTPFNSSMQQLETeNLPMKEQMRRGMKEVGTQSRSWGKNLLVIGAVFSCTECFVEKTRGRSDKWNAIGGGCLTGGILAASSGPQAMAIGCAGFAAF 127
                 4666666414567778888751457899********************************************************************98765554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (140 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       135  (0.0329108); expected 82.0 (0.02)
Passed bias filter:                      109  (0.0265724); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.17u 0.14s 00:00:00.31 Elapsed: 00:00:00.31
# Mc/sec: 596.08
//
Query:       MMETSP1137-20121227|3529_1  [L=278]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-33  114.2   0.0    3.2e-33  113.0   0.0    1.5  1  TIGR00261 traB: TraB family protein


Domain annotation for each model (and alignments):
>> TIGR00261  traB: TraB family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  113.0   0.0   7.9e-37   3.2e-33       5     212 ..      68     276 ..      66     278 .] 0.85

  Alignments for each domain:
  == domain 1    score: 113.0 bits;  conditional E-value: 7.9e-37
   TIGR00261   5 diyivGtahvskksveevaeviesvkPdaiavelderryhslvttkekevdvkkvlkkGnvlklliqlila.nfqkkvgeetGikPGsemkkaiekakkaglpvllidrdieltlkrlwdkltfvekikiif.....ellssteakeelevdelleedvleklvkelkkisPkvkkvliderdefiakklleaekrknsivavvGaGhveGivr 212
                 +i+++Gtahvs+ks +ev  +i+++kPd +avel+ rr   l  +   + d+ + l  G ++  +  l    +      ++ G+ PG + k+a+e a ++ +p+ lidrdie+t++ l + l     +k+++     el s+ ++ +e+ ++ l+ +  l   ++ +++ +P v +v++ +rd+f+ ++l ++++  +++vavvG  h++G+++
  MMETSP1137-20121227|3529_1  68 EIFLIGTAHVSQKSADEVRTMIKMIKPDRVAVELCARRAARLRAGS-PQPDLLRSL--GSAFNSFGFLGAGfEWMNATMRKAGLIPGVDFKAALEVADEMHIPIELIDRDIETTMNLLRNALGSLSLAKLLStpvpsELRSLGHTSIEQAIESLKSRRHLRLAIEYVSECAPSVVDVMLHQRDQFMVDRLSNMQG--QRVVAVVGLAHMKGMEQ 276
                 79************************************87776665.455666555..556655443333212334556789************************************99999999999996222326777788999999*******************************************99..89************976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (278 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       122  (0.0297416); expected 82.0 (0.02)
Passed bias filter:                      109  (0.0265724); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.26u 0.16s 00:00:00.42 Elapsed: 00:00:00.42
# Mc/sec: 873.64
//
Query:       MMETSP1137-20121227|3530_1  [L=661]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.8e-05   21.2   0.1      5e-05   20.3   0.0    1.3  1  TIGR03404 bicupin_oxalic: bicupin, oxalate decarboxylase family


Domain annotation for each model (and alignments):
>> TIGR03404  bicupin_oxalic: bicupin, oxalate decarboxylase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   0.0   1.2e-08     5e-05      74     135 ..     422     486 ..     402     501 .. 0.83

  Alignments for each domain:
  == domain 1    score: 20.3 bits;  conditional E-value: 1.2e-08
   TIGR03404  74 lekgaiRelhWhkeaeWayvlkGsvritavdeegrs...yvddveaGDlwyFpkGvphslqalde 135
                 l+++a  e+  h+e e  y+lkG++ri+  +e  +    y   +++GDl y+p   ph l ++++
  MMETSP1137-20121227|3530_1 422 LQNNAAHEMRTHEELELVYMLKGTLRISLRQEGKHPkvvYRRMLDEGDLAYYPGWQPHGLVSVEH 486
                 8899***********************97766555421245789**************9988853 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (661 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        91  (0.0221843); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.18s 00:00:00.58 Elapsed: 00:00:00.53
# Mc/sec: 1646.13
//
Query:       MMETSP1137-20121227|3531_1  [L=379]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00013   18.5   0.1    0.00023   17.8   0.1    1.3  1  TIGR00990 3a0801s09: mitochondrial precursor proteins import receptor
     0.0023   13.7   2.1     0.0036   13.0   1.4    1.2  1  TIGR02917 PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein


Domain annotation for each model (and alignments):
>> TIGR00990  3a0801s09: mitochondrial precursor proteins import receptor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.1   1.1e-07   0.00023     305     394 ..      19     107 ..       6     127 .. 0.75

  Alignments for each domain:
  == domain 1    score: 17.8 bits;  conditional E-value: 1.1e-07
   TIGR00990 305 kadesyeeaarafekaldlgelkekealalelrGifkflkgkheealadlsksieldPrltqsyikrasinlelgdsdkaeedfdkalkk 394
                  +de ye+a r ++ a++     +++a a+ +r   ++  g+   a  d +++ el P+ + +y +r +    lg+ ++a+e f +al+ 
  MMETSP1137-20121227|3531_1  19 FVDEDYERALRCYDAAVQGAADAQEKAEAYAFRAAAHLKLGNYTAAAXDARQASELCPSAK-AYRRRGVACFSLGSWTEAKEAFSAALRM 107
                 4677888888888888887777777777888888888888888888888888888888877.8888888888888888888888888864 PP

>> TIGR02917  PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   1.4   1.8e-06    0.0036     158     258 ..       7     109 ..       2     127 .. 0.76

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 1.8e-06
   TIGR02917 158 sleaklglAqlalaenkldearalvdevLtadpk...nvdAllLkgdlllssgnieeAlaayrkaielkpnaiaallalatilleegefeeAekkadallkkap 258
                 sl + +  A  a  +++++ a    d++++  ++   +++A+++++   l +gn+ +A+ + r+a el p a+a++ +++++ +++g   eA++   a+l+ ++
  MMETSP1137-20121227|3531_1   7 SLASPMHEANAAFVDEDYERALRCYDAAVQGAADaqeKAEAYAFRAAAHLKLGNYTAAAXDARQASELCPSAKAYR-RRGVACFSLGSWTEAKEAFSAALRMVQ 109
                 5667777888888888999999999999987764222578899999999999999999999999999988876654.677788888888888888777776665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (379 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       140  (0.0341297); expected 82.0 (0.02)
Passed bias filter:                      100  (0.0243784); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.34u 0.18s 00:00:00.52 Elapsed: 00:00:00.43
# Mc/sec: 1163.35
//
Query:       MMETSP1137-20121227|3533_1  [L=169]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (169 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       112  (0.0273038); expected 82.0 (0.02)
Passed bias filter:                      103  (0.0251097); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.19s 00:00:00.37 Elapsed: 00:00:00.27
# Mc/sec: 826.15
//
Query:       MMETSP1137-20121227|3534_1  [L=132]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (132 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       105  (0.0255973); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.16s 00:00:00.33 Elapsed: 00:00:00.32
# Mc/sec: 544.46
//
Query:       MMETSP1137-20121227|3535_1  [L=125]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (125 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        63  (0.0153584); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.17s 00:00:00.34 Elapsed: 00:00:00.38
# Mc/sec: 434.17
//
Query:       MMETSP1137-20121227|3536_1  [L=277]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (277 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        92  (0.0224281); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.13s 00:00:00.34 Elapsed: 00:00:00.40
# Mc/sec: 914.02
//
Query:       MMETSP1137-20121227|3537_1  [L=134]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (134 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        48  (0.0117016); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.13s 00:00:00.29 Elapsed: 00:00:00.37
# Mc/sec: 478.01
//
Query:       MMETSP1137-20121227|3538_1  [L=371]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.014   12.6   0.0       0.12    9.5   0.0    1.9  2  TIGR02604 Piru_Ver_Nterm: putative membrane-bound dehydrogenase domain
      0.015   12.1   0.0      0.023   11.5   0.0    1.2  1  TIGR01502 B_methylAsp_ase: methylaspartate ammonia-lyase


Domain annotation for each model (and alignments):
>> TIGR02604  Piru_Ver_Nterm: putative membrane-bound dehydrogenase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.0     0.026        53     256     328 ..     124     194 ..     111     198 .. 0.75
   2 ?    9.5   0.0     6e-05      0.12      45      93 ..     198     246 ..     191     253 .. 0.84

  Alignments for each domain:
  == domain 1    score: 0.8 bits;  conditional E-value: 0.026
   TIGR02604 256 gdvagggtaatglavYegdalpeeyrgellvaeaggqlivryllepkgagfkgerkeflkskdewfrpvdvtv 328
                 ++va    a   + +   da p++ +g+ll+ +++    ++y   +   +++ +r+++ ks +++ r v +  
  MMETSP1137-20121227|3538_1 124 DEVASVASAVSSVVLKDADATPAQQHGNLLILDLRS--FEEYEKCHIYGAMHYDRTDLNKSTNNFPREVYFFK 194
                 5566666667777788889************99964..56666666666677778888888888777776655 PP

  == domain 2    score: 9.5 bits;  conditional E-value: 6e-05
   TIGR02604  45 egDRIlvleDaDgdGkadksevFaee.lelvsglavavggvivaappdll 93 
                  +D+I++l+D+Dg G  +  + F+e+ +e +  la +++gv   + p++l
  MMETSP1137-20121227|3538_1 198 DSDKIVLLYDEDGKGLGEAGNHFVEKgVENTYVLAGGFKGVCSRC-PHIL 246
                 68**********************964888999999999987554.5555 PP

>> TIGR01502  B_methylAsp_ase: methylaspartate ammonia-lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   1.1e-05     0.023      32      91 ..     266     325 ..     257     339 .. 0.88

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 1.1e-05
   TIGR01502  32 vyvGspategferirekgeslsvelvledgrvvrGdcaavqysGaGgrdplfeakdisav 91 
                 + +G+p  +  +++  + + l + l   ++r v  dc av  sGaG r    ++++ +a+
  MMETSP1137-20121227|3538_1 266 AVAGQPLLDRLQQLHAEHQPLLMRLGRCEERLVEEDCWAVEVSGAGLRAVCSRSTERRAL 325
                 468********************************************9988887777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (371 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        79  (0.0192589); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.29u 0.16s 00:00:00.44 Elapsed: 00:00:00.45
# Mc/sec: 1088.18
//
Query:       MMETSP1137-20121227|3539_1  [L=207]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (207 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       137  (0.0333983); expected 82.0 (0.02)
Passed bias filter:                      102  (0.0248659); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.16s 00:00:00.37 Elapsed: 00:00:00.46
# Mc/sec: 593.95
//
Query:       MMETSP1137-20121227|3540_1  [L=583]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   1.7e-169  562.5  11.8   2.2e-169  562.2   8.2    1.0  1  TIGR02348 GroEL: chaperonin GroL
    6.9e-21   72.4   5.2      2e-16   57.7   0.1    2.4  2  TIGR02339 thermosome_arch: thermosome, various subunits, archaeal
      3e-19   66.5   2.0    1.1e-16   58.0   0.0    2.1  2  TIGR02345 chap_CCT_eta: T-complex protein 1, eta subunit
    1.3e-15   54.8   0.0    2.8e-15   53.7   0.0    1.5  1  TIGR02343 chap_CCT_epsi: T-complex protein 1, epsilon subunit
    2.1e-14   50.9   0.1    2.1e-14   50.9   0.1    2.1  2  TIGR02341 chap_CCT_beta: T-complex protein 1, beta subunit
    3.8e-14   50.1   2.4    3.6e-12   43.6   0.1    2.5  2  TIGR02340 chap_CCT_alpha: T-complex protein 1, alpha subunit
    2.6e-13   47.2   3.5    1.1e-12   45.1   0.1    2.1  2  TIGR02342 chap_CCT_delta: T-complex protein 1, delta subunit
    2.7e-11   40.4   0.8    1.5e-10   37.9   0.0    2.2  3  TIGR02346 chap_CCT_theta: T-complex protein 1, theta subunit
    9.8e-11   38.6   0.7    6.6e-10   35.9   0.0    2.0  2  TIGR02344 chap_CCT_gamma: T-complex protein 1, gamma subunit
    7.9e-10   35.7   0.9    1.3e-08   31.7   0.0    2.1  2  TIGR02347 chap_CCT_zeta: T-complex protein 1, zeta subunit


Domain annotation for each model (and alignments):
>> TIGR02348  GroEL: chaperonin GroL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  562.2   8.2  5.2e-172  2.2e-169       3     523 ..      31     555 ..      29     558 .. 0.97

  Alignments for each domain:
  == domain 1    score: 562.2 bits;  conditional E-value: 5.2e-172
   TIGR02348   3 eikfdeearkalekGvdkladavkvtlGPkgrnvvleksfGaPkitkdGvtvakeieledkfenlGaklvkevasktndvaGdGtttatvlaqaivkeGlknvaaGanpielkrGiekavekvveelkklskevkdkeeiaqvatisanndeeiGeliaeamekvgkdGvitveesksletelevveGmqfdrGyvspyfvtdaekmevelenplilitdkkisavkdllPllekvaksgkplliiaedvegealatlvvnklrgvlkvaavkaPgfGdrrkamlediailtggqviseelglkleevtleklGkakkvtvdkdettivegagekeaikerveqikaqie....etesdydkeklqerlaklaGGvavikvGaatetelkekkarvedalnatraaveeGivaGGGvallraaekleelke..ksedekvGveivkraleaPlrqiaenaGkdgavvvekvkekkdeevGfnaatdeyedlveaGiidpakvtrsalqnaasiagllltteavvadk 523
                 e+++ + ar +l  Gvd++a+avkvtlGP+grnv+l  +    ++++dGvt+a e+el+++ en+G+kl+ ++as+t+  aGdGtttatvl+qai++eG k v+aG np++l+ G+ ka++  v ++++ +k+v++ e+ +q+a+is+n d ++G l+aea+++vg dG    ee+++l++++e++eGm+ + G++s+ f+t+ e++++ l+ p +l+td+ki+++ ++lP+lekv++  +plliia dv geal+ lv+n +rgvl vaavkaPg Gd r+a+l+di+ +tg++++++elg+kl ++tl++lGk ++ +v+k++t++v + + +ea+++ ve++kaq++    +++ +++ ++l++r+ kl G va ik+Ga te+ + +kk+r eda+na r  ++eG+v+GGG+ l +++++ +e ke  ++++e++ v+++  a+ aP+ qi +n+Gk g++v+ekvke+ +  +Gfna+t  yedl++aG+idpa vt  al+naasi+g +ltteavv+d+
  MMETSP1137-20121227|3540_1  31 EVEYGDAARLKLMXGVDQVANAVKVTLGPRGRNVLLYNKNRGARVVNDGVTIANEVELSSHTENVGVKLLLQAASQTDSRAGDGTTTATVLTQAIMREGCKFVSAGHNPMALRSGLYKAARFFVGKIREAAKPVTTLEQYQQIAAISCN-DWDMGGLLAEALDRVGLDGATIFEEGQGLTDSVEYTEGMEIEVGWLSNLFITELETQMAPLDAPRVLVTDQKITTLAEILPVLEKVVEDKSPLLIIAGDVTGEALSGLVLNLNRGVLAVAAVKAPGLGDVRRAFLDDICTFTGATLVTSELGMKLVNTTLDDLGKLDRAVVEKSKTLLVGTGECDEAVNKAVESLKAQVDallsKANKEFEVQRLEQRIVKLRGAVARIKIGAPTEAAIIDKKLRYEDAVNALRGGIAEGMVPGGGACLAHMTRHADECKElmDNDEERLAVDMLVAAMMAPVIQIGANCGKLGELVAEKVKEM-EWGYGFNAQTLVYEDLFAAGVIDPASVTTWALENAASISGAMLTTEAVVTDR 555
                 689*********************************88888889*******************************************************************************************************99.9*****************************************************************************************************************************************************************************************************872222567789999**************************************************************99977611455899**********************************9.679***********************************************97 PP

>> TIGR02339  thermosome_arch: thermosome, various subunits, archaeal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.7   0.1   4.8e-19     2e-16      15     153 ..      36     176 ..      25     204 .. 0.86
   2 !   16.5   0.6   1.5e-06    0.0006     383     516 ..     422     550 ..     368     554 .. 0.84

  Alignments for each domain:
  == domain 1    score: 57.7 bits;  conditional E-value: 4.8e-19
   TIGR02339  15 rdalksniaaakavaeavkstlGPrGlDkmLvdslGdvtitnDGatilkemdi....ehPaakllvevaktqdeevgDGtttavvlaGeLlekaedLleqdihPtviveGyrkaaekalevideiaekidvedkellkkvaet 153
                   a+ + +  +  va+avk tlGPrG + +L +      + nDG+ti +e+++    e+ + kll+++a   d+ +gDGttta vl+ ++++++ + +  +  P  + +G  kaa+  +  i e a+ +++ +  + +++a+ 
  MMETSP1137-20121227|3540_1  36 DAARLKLMXGVDQVANAVKVTLGPRGRNVLLYNKNRGARVVNDGVTIANEVELsshtENVGVKLLLQAASQTDSRAGDGTTTATVLTQAIMREGCKFVSAGHNPMALRSGLYKAARFFVGKIREAAKPVTTLE--QYQQIAAI 176
                 4444555566789**********************99**************98333355678*******************************************************9999999999998653..55555554 PP

  == domain 2    score: 16.5 bits;  conditional E-value: 1.5e-06
   TIGR02339 383 eRaleDalkvvksvledgkvvaGgGavevelakrlreyaakie.GreqlaveafadaleeiprilaenaGldpidalvelRakhekegnknagvdvftgeiedmlelgvieplkvkeqaiksateaatlilriDd 516
                     eDa+++++  +++g+ v+GgGa  + ++++  e  + +    e lav+    a+ + +  +  n G      l el a+  ke +  +g + +t   ed +++gvi+p+ v + a++ a+  + ++l  + 
  MMETSP1137-20121227|3540_1 422 KLRYEDAVNALRGGIAEGM-VPGGGACLAHMTRHADECKELMDnDEERLAVDMLVAAMMAPVIQIGANCG-----KLGELVAEKVKEMEWGYGFNAQTLVYEDLFAAGVIDPASVTTWALENAASISGAMLTTEA 550
                 44469**********9985.8******999998877777666525789*********9999989999988.....588888888888999*******************************99988877776655 PP

>> TIGR02345  chap_CCT_eta: T-complex protein 1, eta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.0   0.0   2.7e-19   1.1e-16      26     142 ..      45     166 ..      26     180 .. 0.87
   2 !    7.9   0.2   0.00042      0.17     383     518 ..     422     552 ..     384     556 .. 0.82

  Alignments for each domain:
  == domain 1    score: 58.0 bits;  conditional E-value: 2.7e-19
   TIGR02345  26 acvaiaeilkttlGPrGmdklivskek.avvsndGatilklldiv.hP...aakllvdiaksqdsevGdGttsvvvlagellkeakplieeglhpqliiralrealklaieklkeiavelde 142
                  + ++a+++k tlGPrG + l+ +k++ a v ndG ti +++++  h      kll++ a   ds  GdGtt+ +vl+  +++e  +++  g +p  +  +l +a ++ + k++e a  ++ 
  MMETSP1137-20121227|3540_1  45 GVDQVANAVKVTLGPRGRNVLLYNKNRgARVVNDGVTIANEVELSsHTenvGVKLLLQAASQTDSRAGDGTTTATVLTQAIMREGCKFVSAGHNPMALRSGLYKAARFFVGKIREAAKPVTT 166
                 57899*****************999998***************96243221358899999999****************************************************9988875 PP

  == domain 2    score: 7.9 bits;  conditional E-value: 0.00042
   TIGR02345 383 erslhdaimivrralkakkivaGGGaielelskllrekskkid.gkqqliieavakaleviPrslaenaGfdsieilnklrkkhakkgekwaGvdieteeildaleafvwePllvkknalkaateaaatilsvdeti 518
                 +   +da+  +r  + a+ +v+GGGa   +++++  e  + +d + ++l ++ +  a+ +   ++  n G      l +l ++  k+ e  +G + +t    d ++a v +P+ v   al+ a++ + ++l+ +  +
  MMETSP1137-20121227|3540_1 422 KLRYEDAVNALRGGI-AEGMVPGGGACLAHMTRHADECKELMDnDEERLAVDMLVAAMMAPVIQIGANCGK-----LGELVAEKVKEMEWGYGFNAQTLVYEDLFAAGVIDPASVTTWALENAASISGAMLTTEAVV 552
                 455678888888877.56799**************99988886256789999999999998999****996.....66676666676666788888888899*******************9999988888776655 PP

>> TIGR02343  chap_CCT_epsi: T-complex protein 1, epsilon subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.7   0.0   6.9e-18   2.8e-15      33     154 ..      43     168 ..      29     179 .. 0.87

  Alignments for each domain:
  == domain 1    score: 53.7 bits;  conditional E-value: 6.9e-18
   TIGR02343  33 iaaakavasilrtslGpkGldkiliskdgditvtndGatilekmdlde...ei.akllvelsksqdeeiGdGttgvvvlasalleqaeklldkGihpikiaeGfekaakvavekleeiaeeisvde 154
                 +  +  va+ ++ +lGp+G + +l +k+    v ndG ti ++++l     ++  kll++ +   d+  GdGtt+  vl+ a++ +  k +  G  p+ +  G  kaa+  v k+ e a+ +++ e
  MMETSP1137-20121227|3540_1  43 MXGVDQVANAVKVTLGPRGRNVLLYNKNRGARVVNDGVTIANEVELSShteNVgVKLLLQAASQTDSRAGDGTTTATVLTQAIMREGCKFVSAGHNPMALRSGLYKAARFFVGKIREAAKPVTTLE 168
                 456789***************************************97522244359999999999****************************************************999887644 PP

>> TIGR02341  chap_CCT_beta: T-complex protein 1, beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.9   0.1   5.2e-17   2.1e-14       7     128 ..      30     153 ..      25     170 .. 0.88
   2 ?   -0.9   1.1      0.25     1e+02     370     506 ..     414     546 ..     347     556 .. 0.67

  Alignments for each domain:
  == domain 1    score: 50.9 bits;  conditional E-value: 5.2e-17
   TIGR02341   7 aeeeraenarlssfvgaiavgdlvkstlgpkgmdkillsasseasivvtndgatilksial....dnpaakvlvdiskvqddevgdgttsvtvlaaellreaeklvnkkihpqtiiegyrlatkaa 128
                 +e e +++arl  + g   v + vk tlgp+g + +l  +++  +  v ndg ti  ++ l    +n   k+l++ +   d   gdgtt+ tvl+  ++re  k+v++   p ++ +g  +a++  
  MMETSP1137-20121227|3540_1  30 CEVEYGDAARLKLMXGVDQVANAVKVTLGPRGRNVLLYNKNR--GARVVNDGVTIANEVELsshtENVGVKLLLQAASQTDSRAGDGTTTATVLTQAIMREGCKFVSAGHNPMALRSGLYKAARFF 153
                 566899****************************99999888..88999*******999873333688899999999999*****************************99*99999988777655 PP

  == domain 2    score: -0.9 bits;  conditional E-value: 0.25
   TIGR02341 370 tqqildeaerslhdalavlsqtvkesrtvlgggcaellmakaveeeaqkvagkkalaveafakalrqlpti.ladnagfdsaelvaklraahaegnstagldleegeiadlrklgivesyklkravvssaaeaaevll 506
                 t+  + + +    da+  l   ++e  +  gg c   +  +a e +    +  + lav+    a+   p i +  n g    elva+   ++       g++ +     dl + g+++   +    +  aa  +  +l
  MMETSP1137-20121227|3540_1 414 TEAAIIDKKLRYEDAVNALRGGIAEGMVPGGGACLAHMTRHADECKELMDNDEERLAVDMLVAAMM-APVIqIGANCG-KLGELVAEKVKEME---WGYGFNAQTLVYEDLFAAGVIDPASVTTWALENAASISGAML 546
                 443333334446899999999999987666666655555566666666667788999999987765.56652556666.56777776444333...335666666666677777777776666666666666555555 PP

>> TIGR02340  chap_CCT_alpha: T-complex protein 1, alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.6   0.1   8.7e-15   3.6e-12       6     130 ..      31     159 ..      26     177 .. 0.87
   2 !    6.0   0.1    0.0022      0.91     390     462 ..     427     498 ..     372     556 .. 0.72

  Alignments for each domain:
  == domain 1    score: 43.6 bits;  conditional E-value: 8.7e-15
   TIGR02340   6 erksGedvrkqnvlavvavanivktslGPvGldkmlvddvGdvtitndGatilkklev....ehPaakvlvelaqlqdkevGdGttsvvilaaellkradelvkrkvhPtsvisGyrlalkeavkyike 130
                 e + G+ +r + +  v +van+vk +lGP G + +l ++     + ndG ti +++e+    e+   k+l + a++ d   GdGtt+  +l+ ++++++ ++v+    P ++ sG+  a++  v  i+e
  MMETSP1137-20121227|3540_1  31 EVEYGDAARLKLMXGVDQVANAVKVTLGPRGRNVLLYNKNRGARVVNDGVTIANEVELsshtENVGVKLLLQAASQTDSRAGDGTTTATVLTQAIMREGCKFVSAGHNPMALRSGLYKAARFFVGKIRE 159
                 677899999999999****************************************998322244567999999*************************************9999988777766666655 PP

  == domain 2    score: 6.0 bits;  conditional E-value: 0.0022
   TIGR02340 390 dalcvvkrtleskkvvaGgGaveaalsiyleelattlgs.reqlaiaefaealliiPkvlavnaakdstelvak 462
                 da+ +++  + ++ +v+GgGa+ a ++   +e+ + +++  e+la+    +a+++   ++ +n++k   elva+
  MMETSP1137-20121227|3540_1 427 DAVNALRGGI-AEGMVPGGGACLAHMTRHADECKELMDNdEERLAVDMLVAAMMAPVIQIGANCGKL-GELVAE 498
                 5555554444.46689*******************99872578*********999888899998874.466664 PP

>> TIGR02342  chap_CCT_delta: T-complex protein 1, delta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.1   0.1   2.7e-15   1.1e-12      16     137 ..      44     169 ..      33     179 .. 0.85
   2 ?    2.5   0.5     0.022       8.8     333     514 ..     380     552 ..     363     555 .. 0.68

  Alignments for each domain:
  == domain 1    score: 45.1 bits;  conditional E-value: 2.7e-15
   TIGR02342  16 vaakavadairtslGpkGmdkliqekkGeviitndGatilkqlevlhpa....akllvelskaqdieaGdGttsvvvlaGalldaaekllekgihptiisesfqsaadealkilkelsipvdlsdr 137
                      va+a++ +lGp+G + l+ +k+    + ndG ti +++e+   +     kll++ +   d+ aGdGtt+  vl+ a++    k+++ g  p+ +  ++ +aa   +  ++e ++pv   ++
  MMETSP1137-20121227|3540_1  44 XGVDQVANAVKVTLGPRGRNVLLYNKNRGARVVNDGVTIANEVELSSHTenvgVKLLLQAASQTDSRAGDGTTTATVLTQAIMREGCKFVSAGHNPMALRSGLYKAARFFVGKIREAAKPVTTLEQ 169
                 55678*******************99999999***********986544222368999999999****************************************9999888888888887766554 PP

  == domain 2    score: 2.5 bits;  conditional E-value: 0.022
   TIGR02342 333 dklGkaelveevksddskivkitGvknagktvsvlvrGsnklvideaerslhdalcvirslvkkraliaGGGapeieialklskkarelkGves.yivrafadalevipytlaenaGlnpikvvtelrnrhaqGektaGisvrkggitdileeevlqpllvtksavtlasetvrsilkiddiv 514
                   l ka+   ev+  + +ivk+ G     k        ++  +id+  r   da+  +r  + + ++++GGGa    ++++  +  + ++  e+ + v     a+      +  n G    ++v+   ++ ++ e  +G + +     d+    v+ p+ vt+ a+  a+    ++l  + +v
  MMETSP1137-20121227|3540_1 380 ALLSKANKEFEVQRLEQRIVKLRGAVARIKIG----APTEAAIIDKKLR-YEDAVNALRGGIAE-GMVPGGGACLAHMTRHADECKELMDNDEErLAVDMLVAAMMAPVIQIGANCGKLG-ELVA---EKVKEMEWGYGFNAQTLVYEDLFAAGVIDPASVTTWALENAASISGAMLTTEAVV 552
                 45667777777777777777777754443321....2345556666555.68999999998865.8999999999999888777777776655414555555555443345566666433.3344...45556677799999999999*****************999998888888777776 PP

>> TIGR02346  chap_CCT_theta: T-complex protein 1, theta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.9   0.0   3.8e-13   1.5e-10      20     135 ..      39     158 ..      27     177 .. 0.86
   2 ?   -0.1   0.0      0.13        51     299     333 ..     377     415 ..     342     430 .. 0.64
   3 ?   -1.7   0.0      0.38   1.6e+02     385     420 ..     426     460 ..     396     553 .. 0.54

  Alignments for each domain:
  == domain 1    score: 37.9 bits;  conditional E-value: 3.8e-13
   TIGR02346  20 vlknieaikelseitrtslGPngmnklvinhleklfvtnDaatilrelevq.hP...aakllvlaskaqeeelGDgtnlvlvlagelLekaeelirlGlspseiikGyelalkkalevLe 135
                  lk +  + ++++ ++ +lGP+g+n l+ n      v nD +ti +e+e+  h     +kll +a+ + ++  GDgt  + vl+ +++++  ++++ G +p+ + +G  +a+++ +  + 
  MMETSP1137-20121227|3540_1  39 RLKLMXGVDQVANAVKVTLGPRGRNVLLYNKNRGARVVNDGVTIANEVELSsHTenvGVKLLLQAASQTDSRAGDGTTTATVLTQAIMREGCKFVSAGHNPMALRSGLYKAARFFVGKIR 158
                 56777888999**************************************9634322269************************************************9888887665554 PP

  == domain 2    score: -0.1 bits;  conditional E-value: 0.13
   TIGR02346 299 kykilvlkisskfelrr....lckvvgatalvrlsapsp 333
                 + + l+ k +  fe++r    ++k+ ga+a ++++ap+ 
  MMETSP1137-20121227|3540_1 377 QVDALLSKANKEFEVQRleqrIVKLRGAVARIKIGAPTE 415
                 345567777778998751111577888899999988875 PP

  == domain 3    score: -1.7 bits;  conditional E-value: 0.38
   TIGR02346 385 dDGvnvvkalvkdsrllpGagateieLakklkkyae 420
                 +D vn+++  + ++ ++pG+ga  ++++++  +  e
  MMETSP1137-20121227|3540_1 426 EDAVNALRGGIAEG-MVPGGGACLAHMTRHADECKE 460
                 56777777766554.667777765554444433333 PP

>> TIGR02344  chap_CCT_gamma: T-complex protein 1, gamma subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.9   0.0   1.6e-12   6.6e-10      12     148 ..      33     173 ..      25     202 .. 0.88
   2 ?    0.7   0.1     0.076        31     390     516 ..     427     548 ..     413     555 .. 0.68

  Alignments for each domain:
  == domain 1    score: 35.9 bits;  conditional E-value: 1.6e-12
   TIGR02344  12 esGrkaqlsniqaakavadiirttlGpkamlkmlldplGgivltndGnailreidvahpa....akslielsrtqdeevGdGttsviilaGellaaaepfleknihptvivraykkaledalkvleelsipvdvedeakll 148
                 e G  a+l+ +     va+ ++ tlGp+    +l +   g  + ndG +i  e++++  +     k l++ +   d   GdGtt+  +l+  ++ +  +f++    p  + ++++ka    + ++ e + pv   ++ +  
  MMETSP1137-20121227|3540_1  33 EYGDAARLKLMXGVDQVANAVKVTLGPRGRNVLLYNKNRGARVVNDGVTIANEVELSSHTenvgVKLLLQAASQTDSRAGDGTTTATVLTQAIMREGCKFVSAGHNPMALRSGLYKAARFFVGKIREAAKPVTTLEQYQQI 173
                 6677788888888899***************************************9754312226889999999*******************************************************999876655544 PP

  == domain 2    score: 0.7 bits;  conditional E-value: 0.076
   TIGR02344 390 dalavarnvllepklvpGGGatelavsvklkkkakkleg.veqlpyeavadaleviprtlvqncGvnvirtltelrakhaqeekkalGidGetGkivdmkekgiweplavklqtiktaiesavlllri 516
                 da++  r  + e+ +vpGGGa   +++++  + ++ +++  e+l +     a+ +    +  ncG     +l el a + +e +  +G + +t    d+  +g+ +p +v + ++  a   +  +l  
  MMETSP1137-20121227|3540_1 427 DAVNALRGGIAEG-MVPGGGACLAHMTRHADECKELMDNdEERLAVDMLVAAMMAPVIQIGANCG-----KLGELVAEKVKEMEWGYGFNAQTLVYEDLFAAGVIDPASVTTWALENAASISGAMLTT 548
                 6666666655554.789999998888777776666554404444444444444333233345666.....5889999999998888899999988899999999999999998888776655555555 PP

>> TIGR02347  chap_CCT_zeta: T-complex protein 1, zeta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.7   0.0   3.2e-11   1.3e-08      21     126 ..      42     151 ..      24     173 .. 0.86
   2 ?    2.4   0.1     0.023       9.3     377     522 ..     410     551 ..     403     557 .. 0.71

  Alignments for each domain:
  == domain 1    score: 31.7 bits;  conditional E-value: 3.2e-11
   TIGR02347  21 nlnaakglqdvlktnlGPkGtlkmlvsgaGdikltkdGnvllkelqiqhPtas....liaraaaaqdditGdGttstviligellkqaerlieeglhPrilteGleiakk 126
                  + +   +++ +k  lGP+G   +l +     ++  dG ++ +e+++ + t +    l+ +aa+  d  +GdGtt++ +l +++++   ++++ g  P  l  Gl  a +
  MMETSP1137-20121227|3540_1  42 LMXGVDQVANAVKVTLGPRGRNVLLYNKNRGARVVNDGVTIANEVELSSHTENvgvkLLLQAASQTDSRAGDGTTTATVLTQAIMREGCKFVSAGHNPMALRSGLYKAAR 151
                 466777888999***********************************9988642222889999999*************************************9987755 PP

  == domain 2    score: 2.4 bits;  conditional E-value: 0.023
   TIGR02347 377 ikgpndhtlkqikdavrdGlravknaiedkcvvaGagafeiallkklkeekksvk.GkaklgveafaeallviPkvlvensGydvqevlvkledeadea.revvgvdletgesivaelkgiwdnysvkkqllssatviasqlllvdev 522
                 i +p++ ++   k    d + a++  i + ++v+G ga  + ++++  e k+ +    ++l+v+++  a++     +  n+G      l +l +e+ ++ +   g + +t    +   +g+ d  sv   +l+ a+ i+  +l  + v
  MMETSP1137-20121227|3540_1 410 IGAPTEAAIIDKKLRYEDAVNALRGGIAE-GMVPGGGACLAHMTRHADECKELMDnDEERLAVDMLVAAMMAPVIQIGANCGK-----LGELVAEKVKEmEWGYGFNAQTLVYEDLFAAGVIDPASVTTWALENAASISGAMLTTEAV 551
                 66777777777777788888888888875.678999**9999999999888877516789******99998644444556653.....333333333330223555555555555667899999999999999999999888877666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (583 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       195  (0.0475378); expected 82.0 (0.02)
Passed bias filter:                      103  (0.0251097); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                        10  (0.00243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.59u 0.15s 00:00:00.74 Elapsed: 00:00:00.89
# Mc/sec: 864.60
//
Query:       MMETSP1137-20121227|3543_1  [L=179]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0051   14.7   0.0     0.0073   14.2   0.0    1.3  1  TIGR01837 PHA_granule_1: poly(hydroxyalkanoate) granule-associated protein


Domain annotation for each model (and alignments):
>> TIGR01837  PHA_granule_1: poly(hydroxyalkanoate) granule-associated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.0   1.8e-06    0.0073       5      46 ..      89     133 ..      85     167 .. 0.73

  Alignments for each domain:
  == domain 1    score: 14.2 bits;  conditional E-value: 1.8e-06
   TIGR01837   5 sarkvwLAGiGalarvqeegsklfdeLVke...Gekaekrakkrv 46 
                  ++ vw A +Gala    egs++f++L  e   G +a+   kk++
  MMETSP1137-20121227|3543_1  89 ESEAVWRAQLGALAEDYPEGSAYFQSLFSEisaGSSARSCYKKAC 133
                 6889***********************754111555555555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (179 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        35  (0.00853242); expected 82.0 (0.02)
Passed bias filter:                       33  (0.00804486); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.16u 0.17s 00:00:00.33 Elapsed: 00:00:00.48
# Mc/sec: 492.21
//
Query:       MMETSP1137-20121227|3545_1  [L=158]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (158 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        43  (0.0104827); expected 82.0 (0.02)
Passed bias filter:                       42  (0.0102389); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.16s 00:00:00.34 Elapsed: 00:00:00.30
# Mc/sec: 695.14
//
Query:       MMETSP1137-20121227|3546_1  [L=205]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (205 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        67  (0.0163335); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.17s 00:00:00.38 Elapsed: 00:00:00.39
# Mc/sec: 693.79
//
Query:       MMETSP1137-20121227|3547_1  [L=697]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.9e-28   96.9   0.0    8.2e-28   94.8   0.0    1.8  2  TIGR02956 TMAO_torS: TMAO reductase sytem sensor TorS
    1.3e-18   65.0   0.0    1.3e-16   58.3   0.0    2.1  1  TIGR02966 phoR_proteo: phosphate regulon sensor kinase PhoR
    9.3e-13   45.4   0.0    9.3e-13   45.4   0.0    2.4  3  TIGR02916 PEP_his_kin: putative PEP-CTERM system histidine kinase
    1.5e-10   38.5   0.0    2.8e-10   37.6   0.0    1.4  1  TIGR01386 cztS_silS_copS: heavy metal sensor kinase
    6.2e-08   29.2   0.0      1e-07   28.5   0.0    1.3  1  TIGR03785 marine_sort_HK: proteobacterial dedicated sortase system histidine kinase
    1.7e-07   28.0   0.0    2.8e-07   27.2   0.0    1.3  1  TIGR02938 nifL_nitrog: nitrogen fixation negative regulator NifL
     0.0003   17.4   1.4       0.24    7.8   0.0    2.5  3  TIGR03039 PS_II_CP47: photosystem II chlorophyll-binding protein CP47
  ------ inclusion threshold ------
       0.02   12.7   0.0        1.7    6.4   0.0    2.3  2  TIGR01957 nuoB_fam: NADH-quinone oxidoreductase, B subunit
      0.029   12.4   0.0         17    3.7   0.0    3.4  3  TIGR00756 PPR: pentatricopeptide repeat domain


Domain annotation for each model (and alignments):
>> TIGR02956  TMAO_torS: TMAO reductase sytem sensor TorS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.1      0.16        71     444     480 ..     427     463 ..     405     486 .. 0.77
   2 !   94.8   0.0   1.8e-30   8.2e-28     511     682 ..     518     692 ..     499     696 .. 0.93

  Alignments for each domain:
  == domain 1    score: -1.0 bits;  conditional E-value: 0.16
   TIGR02956 444 neEvlnHakAraeAeeAnrAKSaFLAtmSHEiRTPln 480
                 ++E  + +  r+  ee  + +  +  +mSH+  TP+ 
  MMETSP1137-20121227|3547_1 427 ESEQRAMDAERVAHEESLQMRNRYVGAMSHDFGTPVA 463
                 5566666667888899999999*************74 PP

  == domain 2    score: 94.8 bits;  conditional E-value: 1.8e-30
   TIGR02956 511 sLldiLnDiLDySkiEaG.hlsiserafdlskLledvlhlmesraqekgiqLsleidedlpevlqgDlsrirQvliNlvgNaiKFTdrGsvvlrvslndds.llfeVeDtGvGiaeeeqetlFkaftqae.grkksgGTGLGLAiskrlveamdgelsveSelgkGScFafelpl 682
                  L  i    L ySk+ aG +l+    +f++++Lle+v  + +   ++  +q  + ++ ++p+v+  D + +  vliNl +N+iK T +G ++l+ +++d+  l ++V DtG G++ +   +lF++f+ a   + ++  TGLGL  sk+l+ +++gels + +  +G  F+ ++pl
  MMETSP1137-20121227|3547_1 518 LLEVIRQKALAYSKLQAGaDLEPTLAHFSPTELLEKVASITRGMRKTTCVQVEVCVSPEVPAVVRSDRNWLFMVLINLASNSIKHTAEGTLTLSAFVDDEArLSLQVRDTGSGVPAHFVPKLFEPFSSACtAKSSVESTGLGLYHSKQLARLLEGELSHAPNRPRGAVFTAHVPL 692
                 3444556789********99********************************************************************************99**************************9967788899*******************************999987 PP

>> TIGR02966  phoR_proteo: phosphate regulon sensor kinase PhoR
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.3   0.0   2.9e-19   1.3e-16      64     332 ..     396     689 ..     382     690 .. 0.73

  Alignments for each domain:
  == domain 1    score: 58.3 bits;  conditional E-value: 2.9e-19
   TIGR02966  64 laekkaeep..lelksplneervlevrivpygeeelllvarDvtklkrleqmRrdFvanvsHELrtPLtvlkGyletleeepeeddea...................aekalelmeeqskrmqsL..v.edLltLsrlEsa.akekeeekvdvaelleelkkeaealseekehqielev..daavkvkgdeeeLrsalsNLveNAikytpeggeitvr.weeeeegaelsvkDtGeGIaaehlprltERFYRvdksrsretgGtGLGLaIvkHvlerheaeLeieSelgkGstFsvk 332
                 l+ ++a++   l  ++++  ++++ +   + ++e++ + a  v + ++l qmR+ +v  +sH+  tP++vlk  l +l+ + e+d+e+                   ++k l+l+++ s  ++ L  + ++ l+ s+l +  + e +  +++ +elle++++ ++ + ++  +q+e+ v  +  + v++d++ L  +l NL +N ik+t eg+ +t++ +  +e++  l+v+DtG G++a+ +p+l+E F    +++s+ +  tGLGL   k   +  e+eL+ + +  +G++F+++
  MMETSP1137-20121227|3547_1 396 LQDQQARSLyaLMKEQKVACDEKVAATRRAAESEQRAMDAERVAHEESL-QMRNRYVGAMSHDFGTPVAVLKMLLGLLRMRIESDEEKrlaiapeqpptvrvrscddNAKLLDLVRRASAALELLevIrQKALAYSKLQAGaDLEPTLAHFSPTELLEKVASITRGMRKTTCVQVEVCVspEVPAVVRSDRNWLFMVLINLASNSIKHTAEGT-LTLSaFVDDEARLSLQVRDTGSGVPAHFVPKLFEPFSSACTAKSSVE-STGLGLYHSKQLARLLEGELSHAPNRPRGAVFTAH 689
                 5555544333344556666667777777777778888888888887776.7*******************99777777544322222101111111111111111113455555655555443222131456888999986245677889999************99999999999988546667899*********************9875.566505566667*************************9999999765.6********************999999**999987 PP

>> TIGR02916  PEP_his_kin: putative PEP-CTERM system histidine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   1.2       0.3   1.3e+02      21      78 ..      71     129 ..      51     158 .. 0.65
   2 ?   -3.1   0.7      0.97   4.4e+02      24      63 ..     260     299 ..     234     369 .. 0.57
   3 !   45.4   0.0   2.1e-15   9.3e-13     530     679 .]     531     691 ..     519     691 .. 0.78

  Alignments for each domain:
  == domain 1    score: -1.4 bits;  conditional E-value: 0.3
   TIGR02916  21 wrkrlaggllllaaalsavwalasaalvl.lkkalkllvlvlevlrdavwlaflltllr 78 
                    r+  +++ +aa++ + wa ++    +   +   +lv+ l +l   +wl+ ll +  
  MMETSP1137-20121227|3547_1  71 AEARTSIRVVCTAAFVVSRWAESMIVEQMfCMTRAYMLVILLPSLAAPMWLIALLNAAC 129
                 44566677888888888999876554433033344455667888999999877776554 PP

  == domain 2    score: -3.1 bits;  conditional E-value: 0.97
   TIGR02916  24 rlaggllllaaalsavwalasaalvllkkalkllvlvlev 63 
                 r+  +++ +aa++ + wa   a++ l ++ l l++  + +
  MMETSP1137-20121227|3547_1 260 RTSIRVVCTAAFVVSRWAXRDAKDQLRAQRLALITFGILL 299
                 4444555555666666666666555555555555543322 PP

  == domain 3    score: 45.4 bits;  conditional E-value: 2.1e-15
   TIGR02916 530 qLrekgl.eeekkavdlvdllervieskraqkp....rievsvdkd..levradrerlervlghLvqNAleATeeeGkVkirverek.eaavieieDsGqGmseeFirerLFkPFdt...tKk..aGmGiGvyesreyveelGGeieveStpgkGtiftlvlP 679
                 +L+ ++  e +   ++ ++lle+v    r +++    ++ev v+ +    vr dr+ l  vl +L+ N +  T  eG+ ++++   +  ++++++ D+G+G++ +F+  +LF+PF++   +K+     G+G+y s+++ + l Ge++ + +  +G++ft  +P
  MMETSP1137-20121227|3547_1 531 KLQAGADlEPTLAHFSPTELLEKVASITRGMRKttcvQVEVCVSPEvpAVVRSDRNWLFMVLINLASNSIKHTA-EGTLTLSAFVDDeARLSLQVRDTGSGVPAHFV-PKLFEPFSSactAKSsvESTGLGLYHSKQLARLLEGELSHAPNRPRGAVFTAHVP 691
                 5555555566666777777777777655554441111444444444447899*******************996.7******998886899***************5.79*****9622246556689*******************************9887 PP

>> TIGR01386  cztS_silS_copS: heavy metal sensor kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.6   0.0   6.2e-13   2.8e-10     337     442 ..     571     675 ..     535     691 .. 0.82

  Alignments for each domain:
  == domain 1    score: 37.6 bits;  conditional E-value: 6.2e-13
   TIGR01386 337 vslkvegeaevegdaqlfrRalsNLlsNAlrytpegstievrverradevevsventgkgipeeelsrlFdRFYRvdaarsnseegtGLGLaIvrsiveaHgGeve 442
                 v ++ e+ a+v++d++ +  +l NL sN +++t+eg+ +     +++  ++++v +tg+g+p++  ++lF+ F  +  a+s  e+ tGLGL   + ++++  Ge++
  MMETSP1137-20121227|3547_1 571 VCVSPEVPAVVRSDRNWLFMVLINLASNSIKHTAEGTLTLSAFVDDEARLSLQVRDTGSGVPAHFVPKLFEPFSSACTAKSSVES-TGLGLYHSKQLARLLEGELS 675
                 3344456699***************************9999999999***************************99999987766.*****888888887777766 PP

>> TIGR03785  marine_sort_HK: proteobacterial dedicated sortase system histidine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.5   0.0   2.2e-10     1e-07     492     692 ..     454     682 ..     442     692 .. 0.80

  Alignments for each domain:
  == domain 1    score: 28.5 bits;  conditional E-value: 2.2e-10
   TIGR03785 492 LsHElrTPvAvVrsSLenLelqklekekqk........................YleRAqegverlsaiLnsmseAtRlEqalqsa.ekedfdlsev...lselvqgYqqlyeeqrfeleieeedlvlrgspellaQllDKlvdNaieFskedglIevslkekkkealltveNeGpplPedlkeklFdsmvSvRaqkaqeqpHLGlGLyIvrliadfHqgeik.aeNraq 692
                 +sH+  TPvAv +  L  L +  +++e+++                         + RA+++ e l+ i ++  + ++l +  + +   ++f   e+   +++++ g +++   q  +   +e + v+r   + l  +l  l +N+i  + e++l        + +  l+v+  G+ +P++   klF+++ S  + k+  +   GlGLy ++ +a   +ge++ a Nr +
  MMETSP1137-20121227|3547_1 454 MSHDFGTPVAVLKMLLGLLRMRIESDEEKRlaiapeqpptvrvrscddnaklldLVRRASAALELLEVIRQKALAYSKLQAGADLEpTLAHFSPTELlekVASITRGMRKTTCVQVEVCVSPEVPAVVRSDRNWLFMVLINLASNSIKHTAEGTLTLSAFVDDEARLSLQVRDTGSGVPAHFVPKLFEPFSSACTAKSSVE-STGLGLYHSKQLARLLEGELShAPNRPR 682
                 68********************9999999999********************9999************99888888888765443213345555555000555666666665555555556666779*************************9998888888999999************************996655555.99********999999998862445555 PP

>> TIGR02938  nifL_nitrog: nitrogen fixation negative regulator NifL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.2   0.0   6.2e-10   2.8e-07     368     468 ..     567     666 ..     507     683 .. 0.82

  Alignments for each domain:
  == domain 1    score: 27.2 bits;  conditional E-value: 6.2e-10
   TIGR02938 368 ivvdwqPaavlPavlGsesrlrslfkalvdnaieamaqkqvkrrelsistaveddl.irveiedsGPGiPadlrlkvfePffttkass..rkhvGmGlavaqei 468
                 + v+   ++ +Pav+ s+     lf  l++ a +++++       l++s+ v+d+  + +++ d+G G+Pa ++ k fePf ++ +++   +  G+Gl   +++
  MMETSP1137-20121227|3547_1 567 VQVEVCVSPEVPAVVRSDR--NWLFMVLINLASNSIKHT--AEGTLTLSAFVDDEArLSLQVRDTGSGVPAHFVPKLFEPFSSACTAKssVESTGLGLYHSKQL 666
                 5566677778888876654..457778888888887777..7789*******9875489**********************98766552266788888777765 PP

>> TIGR03039  PS_II_CP47: photosystem II chlorophyll-binding protein CP47
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.8   0.0   0.00053      0.24      90     129 ..      37      76 ..      23      85 .. 0.87
   2 ?   -2.3   0.0       0.6   2.7e+02      28      76 ..      85     135 ..      75     140 .. 0.74
   3 !    7.8   0.0   0.00052      0.24      90     129 ..     223     262 ..     206     268 .. 0.87

  Alignments for each domain:
  == domain 1    score: 7.8 bits;  conditional E-value: 0.00053
   TIGR03039  90 fwsfegvaaahivlsgllllaavwhwvywdlelfrdprtg 129
                  w f    + h+ + gl +la+vw  v ++l+   + rt+
  MMETSP1137-20121227|3547_1  37 AWQFRQNYLVHMCMLGLPFLASVWLLVCFELDKEAEARTS 76 
                 599*9***************************99888885 PP

  == domain 2    score: -2.3 bits;  conditional E-value: 0.6
   TIGR03039  28 alvagwagsmalyelaifdpsd..avlnpmwrqgmyvlpfmarlgvtesws 76 
                  +v+ wa sm + ++  +       +l p     m+++ ++    v +sw+
  MMETSP1137-20121227|3547_1  85 FVVSRWAESMIVEQMFCMTRAYmlVILLPSLAAPMWLIALLNAACVAGSWN 135
                 367889999988877666554311578899999999999999999999997 PP

  == domain 3    score: 7.8 bits;  conditional E-value: 0.00052
   TIGR03039  90 fwsfegvaaahivlsgllllaavwhwvywdlelfrdprtg 129
                  w f    + h+ + gl +la+vw  v ++l+   + rt+
  MMETSP1137-20121227|3547_1 223 AWQFRQNYLVHMCMLGLPFLASVWLLVCFELDKEAEARTS 262
                 599*****************************98888875 PP

>> TIGR01957  nuoB_fam: NADH-quinone oxidoreductase, B subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   0.0    0.0037       1.7      54     103 ..      87     136 ..      60     145 .. 0.85
   2 ?    3.7   0.0     0.026        12      60     109 ..     319     368 ..     306     381 .. 0.85

  Alignments for each domain:
  == domain 1    score: 6.4 bits;  conditional E-value: 0.0037
   TIGR01957  54 sPrqadvlivaGtvtkkmapvlrrlydqmpePkyvismGacansGGlfke 103
                   r a+ +iv  +  +  a +l  l   ++ P + i++ + a   G +++
  MMETSP1137-20121227|3547_1  87 VSRWAESMIVEQMFCMTRAYMLVILLPSLAAPMWLIALLNAACVAGSWNQ 136
                 469999********************************999999998876 PP

  == domain 2    score: 3.7 bits;  conditional E-value: 0.026
   TIGR01957  60 vlivaGtvtkkmapvlrrlydqmpePkyvismGacansGGlfkesysvvk 109
                  +iv  +     a +l  l   ++ P + i++ + a   G +++    v+
  MMETSP1137-20121227|3547_1 319 SMIVEQMFCXTRAYMLVILLPSLAAPMWLIALLNAACVAGSWNQAVRLVN 368
                 58999999999999**********************99999988766654 PP

>> TIGR00756  PPR: pentatricopeptide repeat domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.0      0.22        98       5      22 ..     123     140 ..     122     144 .. 0.91
   2 ?    2.8   0.0     0.072        33       5      24 ..     349     368 ..     348     371 .. 0.91
   3 ?    3.7   0.0     0.038        17      18      35 .]     400     417 ..     399     417 .. 0.89

  Alignments for each domain:
  == domain 1    score: 1.3 bits;  conditional E-value: 0.22
   TIGR00756   5 tlisglckagrveeAlel 22 
                 +l+++ c ag+++ A++l
  MMETSP1137-20121227|3547_1 123 ALLNAACVAGSWNQAVRL 140
                 699************987 PP

  == domain 2    score: 2.8 bits;  conditional E-value: 0.072
   TIGR00756   5 tlisglckagrveeAlelfd 24 
                 +l+++ c ag+++ A++l +
  MMETSP1137-20121227|3547_1 349 ALLNAACVAGSWNQAVRLVN 368
                 699*************9976 PP

  == domain 3    score: 3.7 bits;  conditional E-value: 0.038
   TIGR00756  18 eAlelfdeMkergivPda 35 
                  A++l+ +Mke+++ +d+
  MMETSP1137-20121227|3547_1 400 QARSLYALMKEQKVACDE 417
                 599**********99885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (697 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       105  (0.0255973); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         9  (0.00219405); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.55u 0.16s 00:00:00.71 Elapsed: 00:00:00.56
# Mc/sec: 1642.79
//
Query:       MMETSP1137-20121227|3548_1  [L=308]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.8e-07   28.6   0.0    2.4e-07   28.2   0.0    1.1  1  TIGR03467 HpnE: squalene-associated FAD-dependent desaturase
  ------ inclusion threshold ------
      0.025   11.1   0.0      0.034   10.7   0.0    1.1  1  TIGR02731 phytoene_desat: phytoene desaturase


Domain annotation for each model (and alignments):
>> TIGR03467  HpnE: squalene-associated FAD-dependent desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.2   0.0   1.2e-10   2.4e-07     337     409 ..       5      78 ..       2     104 .. 0.87

  Alignments for each domain:
  == domain 1    score: 28.2 bits;  conditional E-value: 1.2e-10
   TIGR03467 337 dledlereeladrivael.rrllpkvaeakllkakvikekrAtFaatpglerlRPgartplpnlfLAGDwtatg 409
                 +l +l++ee+++ ++++l  +++p+ + a+ +++ v +   A+   +pg  r RP+ +t++pnl+ AGDw++ g
  MMETSP1137-20121227|3548_1   5 ALLSLPDEEIVRILMEDLlPAAVPAFRSARTVDSFVQRYPGAVTWFSPGSFRSRPPLQTSVPNLVCAGDWVRMG 78 
                 677899***********725789***********************************************9876 PP

>> TIGR02731  phytoene_desat: phytoene desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   1.7e-05     0.034     359     430 ..       7      75 ..       2      85 .. 0.92

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 1.7e-05
   TIGR02731 359 igrsdeeiieatlkeleklfpdelkadekakllkskvvktprsvykatpgreklrpaqktpienfflagdyt 430
                 ++ +deei+   +++   l+p  + a   a+ + s v + p +v   +pg  + rp  +t ++n+  agd+ 
  MMETSP1137-20121227|3548_1   7 LSLPDEEIVRILMED---LLPAAVPAFRSARTVDSFVQRYPGAVTWFSPGSFRSRPPLQTSVPNLVCAGDWV 75 
                 6789*****999876...79*************************************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (308 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        50  (0.0121892); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.25u 0.17s 00:00:00.42 Elapsed: 00:00:00.32
# Mc/sec: 1270.40
//
Query:       MMETSP1137-20121227|3550_1  [L=156]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (156 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        94  (0.0229157); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.15s 00:00:00.32 Elapsed: 00:00:00.31
# Mc/sec: 664.20
//
Query:       MMETSP1137-20121227|3551_1  [L=481]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (481 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        79  (0.0192589); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.14s 00:00:00.48 Elapsed: 00:00:00.43
# Mc/sec: 1476.44
//
Query:       MMETSP1137-20121227|3552_1  [L=72]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       100  (0.0243784); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.28
# Mc/sec: 339.40
//
Query:       MMETSP1137-20121227|3553_1  [L=563]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.2e-45  150.7   0.0    8.5e-45  150.0   0.0    1.3  1  TIGR00607 rad52: recombination protein rad52


Domain annotation for each model (and alignments):
>> TIGR00607  rad52: recombination protein rad52
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  150.0   0.0   2.1e-48   8.5e-45       2     139 ..      46     185 ..      45     205 .. 0.94

  Alignments for each domain:
  == domain 1    score: 150.0 bits;  conditional E-value: 2.1e-48
   TIGR00607   2 iqkalrkklGpeyiskrvggGgskvayiegwkvielaneifGynGwsssiksvnvdfvdenk..gkfsvGvsaivrvtlkdGsyhedvGyGsvenlrskalalekakkeavtdalkralrsfGnalGnclydkdylrkid 139
                 +q+ l+ +l    i +r ggG+ kv y+egw+vi+ a +ifG++Gwss+i +++ ++ +++k  +++svG sa +rv+lkdG++hedvG+Gs+ n++ +  a+e+a+keavtd+ kralr fG+alGn +ydk +++++ 
  MMETSP1137-20121227|3553_1  46 VQRLLQTNLEAHEIMHREGGGAGKVPYMEGWRVIDKAQRIFGFDGWSSKILELRKEYEEQDKssKRWSVGYSASIRVELKDGTFHEDVGFGSTINEKDRGKAIENARKEAVTDGTKRALRLFGAALGNSVYDKLHVKEVR 185
                 79999****************************************************98877779***********************************************************************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (563 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       164  (0.0399805); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.15s 00:00:00.52 Elapsed: 00:00:00.91
# Mc/sec: 816.59
//
Query:       MMETSP1137-20121227|3554_1  [L=418]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.028   11.9   0.0      0.044   11.2   0.0    1.3  1  TIGR03061 pip_yhgE_Nterm: YhgE/Pip N-terminal domain


Domain annotation for each model (and alignments):
>> TIGR03061  pip_yhgE_Nterm: YhgE/Pip N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   1.1e-05     0.044      19     110 ..     127     219 ..     111     262 .. 0.84

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 1.1e-05
   TIGR03061  19 llliPllyg.glfLaalwdpygnldklpvAvVneDkgatldgkklnaGddlvkeLkknkeldwqfvsekeAekglkegkyymvvtiPedFSen 110
                  l iPl+ + +++L  +  p+++ d + v   n    a  +g +   G  l  +    ++l ++ + + +    l+ + yy  v iP+ +S+ 
  MMETSP1137-20121227|3554_1 127 TLDIPLVLSeVVYLNTMVTPNNREDMIRVVKFNVQPIALEQGASAGPGLCLFGKELGGHTLTFTRTASFQGTTHLATRAYYDDVVIPQLLSNI 219
                 455898765389***************************************999999*******************************99964 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (418 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       142  (0.0346173); expected 82.0 (0.02)
Passed bias filter:                      119  (0.0290102); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.32u 0.17s 00:00:00.49 Elapsed: 00:00:00.41
# Mc/sec: 1345.64
//
Query:       MMETSP1137-20121227|3555_1  [L=1042]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0035   14.3   0.0      0.038   10.9   0.0    2.1  2  TIGR03404 bicupin_oxalic: bicupin, oxalate decarboxylase family


Domain annotation for each model (and alignments):
>> TIGR03404  bicupin_oxalic: bicupin, oxalate decarboxylase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.9   0.0   9.4e-06     0.038      85     141 ..     435     494 ..     425     501 .. 0.84
   2 ?    0.7   0.0     0.011        46     242     274 ..     815     849 ..     791     858 .. 0.70

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 9.4e-06
   TIGR03404  85 hkeaeWayvlkGsvritavde...egrsyvddveaGDlwyFpkGvphslqaldegaefll 141
                 h+e    yv++G+++++++++   e  +y + +++GDl y p+ +ph   +++++  +ll
  MMETSP1137-20121227|3555_1 435 HEEMLMLYVVAGTIKVSILQSppyEKAVYQKFLDKGDLLYLPSWLPHRFTSVEHDQSVLL 494
                 55556679***********8633367788899******************9988777776 PP

  == domain 2    score: 0.7 bits;  conditional E-value: 0.011
   TIGR03404 242 sktiaaalvtvePgalRelhWh.pnadeWq.yfik 274
                 +++i + +  ++   +Re+ W  + +d W  yf +
  MMETSP1137-20121227|3555_1 815 ASEICSCIALMHMKRMREMVWDkAMSDGWAnYFKN 849
                 45666777777888999999972467889625544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1042 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       100  (0.0243784); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.61u 0.18s 00:00:00.79 Elapsed: 00:00:00.75
# Mc/sec: 1833.77
//
Query:       MMETSP1137-20121227|3556_1  [L=277]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (277 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        47  (0.0114578); expected 82.0 (0.02)
Passed bias filter:                       39  (0.00950756); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.12s 00:00:00.32 Elapsed: 00:00:00.52
# Mc/sec: 703.10
//
Query:       MMETSP1137-20121227|3557_1  [L=198]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (198 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        52  (0.0126767); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.09s 00:00:00.28 Elapsed: 00:00:00.49
# Mc/sec: 533.34
//
Query:       MMETSP1137-20121227|3558_1  [L=131]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0053   13.9   0.0     0.0065   13.6   0.0    1.0  1  TIGR01620 hyp_HI0043: TIGR01620 family protein


Domain annotation for each model (and alignments):
>> TIGR01620  hyp_HI0043: TIGR01620 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   0.0   1.6e-06    0.0065      57     161 ..       8     116 ..       2     120 .. 0.77

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 1.6e-06
   TIGR01620  57 viilagvaevvtevrrlvrLkkreslkdeaedlllekavkkgd.kilcrklaksagle....esakalarlkeslnevidarevveLferevlsslDaqarklisksaae 161
                 ++ l+  ++ v+ ++++ r+  + + k+  e ++ e+a++ +  +i+ r+l   +++      s++ l+r+++++ e  +++e ++++  + l+  +++ r+ i + a +
  MMETSP1137-20121227|3558_1   8 LVTLLIFGSGVAGWFGVKRMLGVGDAKEFGE-AMKEHAPQASSfEIVGRRLQTVSQRWgdaiSSNEWLIRWRRNMRERFNDPEGAKIARENSLVMAERRVRQRIARRAMR 116
                 4445556666789********9999987665.6677887776658998887766665411113456689************************************99977 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (131 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       155  (0.0377864); expected 82.0 (0.02)
Passed bias filter:                      112  (0.0273038); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.17u 0.14s 00:00:00.31 Elapsed: 00:00:00.43
# Mc/sec: 402.11
//
Query:       MMETSP1137-20121227|3559_1  [L=410]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (410 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       118  (0.0287665); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.15s 00:00:00.43 Elapsed: 00:00:00.56
# Mc/sec: 966.35
//
Query:       MMETSP1137-20121227|3560_1  [L=569]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.014   11.9   0.0      0.022   11.2   0.0    1.2  1  TIGR02734 crtI_fam: phytoene desaturase


Domain annotation for each model (and alignments):
>> TIGR02734  crtI_fam: phytoene desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   5.4e-06     0.022     424     477 ..     350     403 ..     336     428 .. 0.88

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 5.4e-06
   TIGR02734 424 dfedelnaalGsafslehtltQsaffRprnrsekvdnlylvGagThPGvGvPgv 477
                 dfe + n++    f +++ l Q   + p+ + ++v+ + + G+ T P  GvP  
  MMETSP1137-20121227|3560_1 350 DFECWHNQYVQMQFDVDPALEQASDLEPKYARDRVARALVKGSSTQPRDGVPAT 403
                 9***************************************************75 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (569 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        97  (0.023647); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.16s 00:00:00.53 Elapsed: 00:00:00.51
# Mc/sec: 1472.58
//
Query:       MMETSP1137-20121227|3561_1  [L=691]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (691 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        94  (0.0229157); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.18s 00:00:00.61 Elapsed: 00:00:00.94
# Mc/sec: 970.26
//
Query:       MMETSP1137-20121227|3562_1  [L=139]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (139 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        98  (0.0238908); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.12s 00:00:00.28 Elapsed: 00:00:00.30
# Mc/sec: 611.55
//
Query:       MMETSP1137-20121227|3563_1  [L=139]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (139 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        92  (0.0224281); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.16s 00:00:00.32 Elapsed: 00:00:00.36
# Mc/sec: 509.62
//
Query:       MMETSP1137-20121227|3564_1  [L=655]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (655 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       332  (0.0809361); expected 82.0 (0.02)
Passed bias filter:                      123  (0.0299854); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.49u 0.17s 00:00:00.66 Elapsed: 00:00:00.62
# Mc/sec: 1394.40
//
Query:       MMETSP1137-20121227|3565_1  [L=478]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        1.3    4.4  35.8        1.8    3.9  24.8    1.1  1  TIGR02168 SMC_prok_B: chromosome segregation protein SMC


Domain annotation for each model (and alignments):
>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9  24.8   0.00045       1.8     670     868 ..     276     471 ..     265     475 .. 0.66

  Alignments for each domain:
  == domain 1    score: 3.9 bits;  conditional E-value: 0.00045
   TIGR02168 670 tessilerkkeieeleeeieeleekiaelekelkelekeleeleeeleklrkeleelerklselkkelerlekeveqleerlaqlekeleeleeereeleeeleeaeeel..keaeeeieeleaeieqlkeelkalrealseleaeltelkeeaaekeerleslekeiaale.keleeleeqieeleeeiesleaeieelee 868
                 ++ +il+ +ke e+l +e +e e + ael+++++++ ++++        l + +++++r++++  + l+++ + v++le++ + +++ +e+le+er+e e++ +e+ee++  +++++e  +l + i++ k+++  ++e + e+ea  +e ++e++ ++ rl+   +e++a+e k +e ++++++ ++ee+++ +++ +++e+
  MMETSP1137-20121227|3565_1 276 QRYQILADRKEAERLAAEKKERETAEAELRQAMSAATESRDGSM-----LARPIRRAKRAVEADAALLDSADEMVKTLEAEKK-ERELQERLENERKEREAATAELEEAIgaARQSREPSTLAKPIRRCKKAVGVSEELIGEAEALKSEIEAEIKAEKARLAAELAEKKAAEkKAAEAAAAEKKAAAEEAAARAKAAKDAEA 471
                 45788999999999999999999999999999988888655433.....5555555555566666666666666665554332.2333445555555555555555555533556677778999999999999999999999999888888888888888776655555555045555666666666666666666666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (478 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       420  (0.102389); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.18s 00:00:00.69 Elapsed: 00:00:00.42
# Mc/sec: 1502.16
//
Query:       MMETSP1137-20121227|3566_1  [L=66]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (66 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        23  (0.00560702); expected 82.0 (0.02)
Passed bias filter:                       23  (0.00560702); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.14s 00:00:00.27 Elapsed: 00:00:00.22
# Mc/sec: 395.97
//
Query:       MMETSP1137-20121227|3567_1  [L=580]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.5e-63  211.3   0.0    3.4e-63  210.9   0.0    1.2  1  TIGR01351 adk: adenylate kinases
    1.9e-34  117.1   0.0      2e-25   87.7   0.0    2.2  2  TIGR01359 UMP_CMP_kin_fam: UMP-CMP kinase family
    3.5e-33  112.7   0.1    1.8e-25   87.6   0.0    2.2  2  TIGR01360 aden_kin_iso1: adenylate kinase
    0.00027   18.5   0.0      0.017   12.6   0.0    2.2  2  TIGR03263 guanyl_kin: guanylate kinase
    0.00027   18.8   0.0    0.00059   17.7   0.0    1.5  1  TIGR02173 cyt_kin_arch: putative cytidylate kinase
     0.0028   15.2   0.0     0.0047   14.5   0.0    1.3  1  TIGR00017 cmk: cytidylate kinase


Domain annotation for each model (and alignments):
>> TIGR01351  adk: adenylate kinases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  210.9   0.0     5e-66   3.4e-63       2     211 ..     371     577 ..     370     578 .. 0.94

  Alignments for each domain:
  == domain 1    score: 210.9 bits;  conditional E-value: 5e-66
   TIGR01351   2 lvllGpPGsGKGTqakrlaeklglvhistGdllRaevkkk.telgkkakeylekGklvpdeiviklvkerleeeedeekgfiLDGfPRtleQaeaLdelleelglkldavielkvpdevlverisgRricpkcgkvynlkfkkpkvecddctaellkqReDDteevvkkRlevYkeqteplieyYkkkgklveidaekkieevlkeileal 211
                 + + GpP+sGKGT a+r++  ++lvhistGd+lR++++ + +e g+ka+e++++G+lvpde++++lv erl++ + ++kg++LDGfPRt +Qa  +++      l  ++v+ l+ pd+v++er++gRr++p++gk+y+lkf++p  + +++ + +l+qReDDtee++kkRl +Y ++++ + + +++   l  +da+++ + +++ei+++l
  MMETSP1137-20121227|3567_1 371 VCIAGPPASGKGTAAERIVGAFELVHISTGDMLREAMADEsNENGQKAAEFMKEGELVPDELIVSLVVERLSKPDCASKGWLLDGFPRTASQAFEMQKK----FLVPSKVLLLDAPDDVILERVTGRRLDPETGKIYHLKFSPPDGDDKEEVTARLTQREDDTEEALKKRLATYAQNKQAVTDAFSTVCPLKLVDANREKDVIWEEIKAFL 577
                 7799*********************************987589******************************8888****************999874....4579*************************************99666677779999*************************************************9876 PP

>> TIGR01359  UMP_CMP_kin_fam: UMP-CMP kinase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.7   0.0   2.9e-28     2e-25       4     127 ..     373     494 ..     370     502 .. 0.91
   2 !   27.3   0.0   9.6e-10   6.6e-07     130     184 ..     523     577 ..     507     578 .. 0.91

  Alignments for each domain:
  == domain 1    score: 87.7 bits;  conditional E-value: 2.9e-28
   TIGR01359   4 vlGgPGsGkGtqCakiveefkfvhlsaGdllreeikregseegelieslikeGkivPsevtvellekaikese.eskkflidGfPrneenleaweklidekvevkfvlfldcseevmvkrllkrg 127
                 + G+P sGkGt  ++iv +f+ vh+s+Gd+lre+++ e++e+g+  ++++keG++vP e+ v+l+ +++++ +  sk +l+dGfPr +   +a+e ++++ + ++ vl ld++++v+ +r++ r 
  MMETSP1137-20121227|3567_1 373 IAGPPASGKGTAAERIVGAFELVHISTGDMLREAMADESNENGQKAAEFMKEGELVPDELIVSLVVERLSKPDcASKGWLLDGFPRTA--SQAFE-MQKKFLVPSKVLLLDAPDDVILERVTGRR 494
                 78*****************************************************************9998776899*********87..57888.4455788899****************995 PP

  == domain 2    score: 27.3 bits;  conditional E-value: 9.6e-10
   TIGR01359 130 sGrvddnieslkkrletykeetlpvieyfekknkvkkidaeksveevfeevekif 184
                 + r+dd +e+lkkrl ty ++   v + f+    +k +da+++ + ++ee+++ +
  MMETSP1137-20121227|3567_1 523 TQREDDTEEALKKRLATYAQNKQAVTDAFSTVCPLKLVDANREKDVIWEEIKAFL 577
                 3699***********************************************9876 PP

>> TIGR01360  aden_kin_iso1: adenylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.6   0.0   2.6e-28   1.8e-25       7     127 ..     372     493 ..     367     499 .. 0.95
   2 !   22.8   0.2   1.9e-08   1.3e-05     129     184 ..     521     576 ..     516     579 .. 0.90

  Alignments for each domain:
  == domain 1    score: 87.6 bits;  conditional E-value: 2.6e-28
   TIGR01360   7 fivGGpGsGkGtqcekivekyGfthlssGdllreevasgs.ergkklqaimekGelvpldvvldllkeallkalekskGflidGyprevkqGeefekriaeaklvlyldvsedtlvkrllkr 127
                  i G p sGkGt  e+iv  + + h+s+Gd+lre +a +s e g+k  + m++Gelvp + +++l+ e l k    skG+l+dG+pr   q  e++k+   ++ vl+ld+ +d + +r+  r
  MMETSP1137-20121227|3567_1 372 CIAGPPASGKGTAAERIVGAFELVHISTGDMLREAMADESnENGQKAAEFMKEGELVPDELIVSLVVERLSKPDCASKGWLLDGFPRTASQAFEMQKKFLVPSKVLLLDAPDDVILERVTGR 493
                 68899*********************************9945799999*********************************************************************99766 PP

  == domain 2    score: 22.8 bits;  conditional E-value: 1.9e-08
   TIGR01360 129 etsarvddnektikkrletykkatepvieyyeskgkllkinaegtvddvflevvaa 184
                 + + r+dd+e+++kkrl ty ++ ++v + + + + l+ ++a+++ d ++ e+ a 
  MMETSP1137-20121227|3567_1 521 RLTQREDDTEEALKKRLATYAQNKQAVTDAFSTVCPLKLVDANREKDVIWEEIKAF 576
                 56789******************************************999988765 PP

>> TIGR03263  guanyl_kin: guanylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.0     0.014       9.8       4      45 ..     371     412 ..     368     426 .. 0.87
   2 !   12.6   0.0   2.5e-05     0.017     122     158 ..     514     551 ..     492     564 .. 0.82

  Alignments for each domain:
  == domain 1    score: 3.6 bits;  conditional E-value: 0.014
   TIGR03263   4 ivisgpsGvGKstlvkklleekeelklsvSattRkpRegEvd 45 
                 + i+gp + GK+t +++++   e +++s     R++ ++E +
  MMETSP1137-20121227|3567_1 371 VCIAGPPASGKGTAAERIVGAFELVHISTGDMLREAMADESN 412
                 5699****************9999999999988888887765 PP

  == domain 2    score: 12.6 bits;  conditional E-value: 2.5e-05
   TIGR03263 122 sleeLeeRlkkRgtdseeviekRlek.Akkelkaaeef 158
                 ++ee++ Rl++R++d+ee+++kRl++ A+++ + ++ f
  MMETSP1137-20121227|3567_1 514 DKEEVTARLTQREDDTEEALKKRLATyAQNKQAVTDAF 551
                 57899*******************97355554445555 PP

>> TIGR02173  cyt_kin_arch: putative cytidylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.0   8.7e-07   0.00059       3      39 ..     371     409 ..     369     437 .. 0.83

  Alignments for each domain:
  == domain 1    score: 17.7 bits;  conditional E-value: 8.7e-07
   TIGR02173   3 ivisGpPGsGkttvakilaeklslklisaGki.re.lae 39 
                 + i+GpP sGk t a+ +   ++l +is+G++ re +a+
  MMETSP1137-20121227|3567_1 371 VCIAGPPASGKGTAAERIVGAFELVHISTGDMlREaMAD 409
                 89****************************852552343 PP

>> TIGR00017  cmk: cytidylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.0   6.8e-06    0.0047       4      38 ..     370     404 ..     367     427 .. 0.91

  Alignments for each domain:
  == domain 1    score: 14.5 bits;  conditional E-value: 6.8e-06
   TIGR00017   4 iiaiDGPsaaGKstvakalaeklgykyldsGalYR 38 
                  + i GP a+GK+t a ++  + ++ ++++G + R
  MMETSP1137-20121227|3567_1 370 NVCIAGPPASGKGTAAERIVGAFELVHISTGDMLR 404
                 6889*****************************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (580 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       106  (0.0258411); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                        20  (0.00487567); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.43u 0.13s 00:00:00.56 Elapsed: 00:00:00.55
# Mc/sec: 1391.89
//
Query:       MMETSP1137-20121227|3568_1  [L=227]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (227 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        97  (0.023647); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.16s 00:00:00.37 Elapsed: 00:00:00.26
# Mc/sec: 1152.37
//
Query:       MMETSP1137-20121227|3570_1  [L=226]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (226 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        57  (0.0138957); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.13s 00:00:00.33 Elapsed: 00:00:00.32
# Mc/sec: 932.17
//
Query:       MMETSP1137-20121227|3571_1  [L=89]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (89 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        35  (0.00853242); expected 82.0 (0.02)
Passed bias filter:                       35  (0.00853242); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.13s 00:00:00.26 Elapsed: 00:00:00.26
# Mc/sec: 451.81
//
Query:       MMETSP1137-20121227|3572_1  [L=104]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (104 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       195  (0.0475378); expected 82.0 (0.02)
Passed bias filter:                      134  (0.032667); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.15s 00:00:00.31 Elapsed: 00:00:00.25
# Mc/sec: 549.07
//
Query:       MMETSP1137-20121227|3573_1  [L=351]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (351 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        49  (0.0119454); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.14s 00:00:00.39 Elapsed: 00:00:00.39
# Mc/sec: 1187.90
//
Query:       MMETSP1137-20121227|3574_1  [L=798]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.9e-17   60.2   0.0    6.1e-17   59.5   0.0    1.2  1  TIGR03088 stp2: sugar transferase, PEP-CTERM/EpsH1 system associated
    2.7e-13   47.4   0.0    4.3e-13   46.7   0.0    1.2  1  TIGR03999 thiol_BshA: N-acetyl-alpha-D-glucosaminyl L-malate synthase BshA
    6.2e-09   33.2   0.0    1.1e-08   32.5   0.0    1.3  1  TIGR04047 MSMEG_0565_glyc: glycosyltransferase, MSMEG_0565 family
    1.1e-08   32.4   0.0    2.2e-08   31.3   0.0    1.5  1  TIGR04157 glyco_rSAM_CFB: glycosyltransferase, GG-Bacteroidales peptide system
    7.7e-07   26.1   0.0    1.2e-06   25.5   0.0    1.2  1  TIGR04005 wcaL: colanic acid biosynthesis glycosyltransferase WcaL
    1.7e-06   25.0   0.1    2.8e-06   24.3   0.1    1.2  1  TIGR04063 stp3: PEP-CTERM/exosortase A-associated glycosyltransferase, Daro_2409 family
    4.9e-06   23.5   0.0      8e-06   22.8   0.0    1.2  1  TIGR03449 mycothiol_MshA: UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase
    0.00045   17.3   0.0    0.00073   16.6   0.0    1.3  1  TIGR02149 glgA_Coryne: glycogen synthase, Corynebacterium family
  ------ inclusion threshold ------
      0.032   10.1   0.0      0.048    9.6   0.0    1.1  1  TIGR02470 sucr_synth: sucrose synthase


Domain annotation for each model (and alignments):
>> TIGR03088  stp2: sugar transferase, PEP-CTERM/EpsH1 system associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.5   0.0   1.3e-19   6.1e-17     192     367 ..     215     395 ..     184     399 .. 0.80

  Alignments for each domain:
  == domain 1    score: 59.5 bits;  conditional E-value: 1.3e-19
   TIGR03088 192 deevvvgtvgrleavkdqvtLvrafillvqqkkekeerlrLvivGdGaarea....lealveaaGleklvwlaGertdiaellqalDv..fvLpslaeGisntvLeamasglPviatavGGnaeLveegvtGklvpssdaealakalekY....vsdkklikahGkaarerieqkfsleamveaYa 367
                 ++ + ++t g + + k+q   v+ f +       +++++rL+ivG+  +r+     +e++ ++a  +  +++    +d+ +  + +Dv  f  + l+e +++ + e+m  ++Pv++t++ G +e++e+g+ G+++p+++ e +a+al++     ++ +  + + G +a++ +++ f+ ++mv++Y 
  MMETSP1137-20121227|3574_1 215 QRPITLLTLGIVCPRKNQHWAVQVFKKFA----GNRKDVRLIIVGARYQRQYeieyVEKVKAEADGDPRIEIHDVTSDVDQFYRVADVllFTXATLNEVTPMVIAESMMRAIPVVTTNIAGIPEMLEHGKHGYVLPPEE-EPFANALKELcvpgADGQRKRLQMGLTAKKHADATFTNRTMVTEYR 395
                 56667777777777888887777776554....455678********9998611113444445666789******************83345679*****************************************987.457778777655447778888899********************96 PP

>> TIGR03999  thiol_BshA: N-acetyl-alpha-D-glucosaminyl L-malate synthase BshA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.7   0.0   9.5e-16   4.3e-13     215     367 ..     233     395 ..     224     400 .. 0.78

  Alignments for each domain:
  == domain 1    score: 46.7 bits;  conditional E-value: 9.5e-16
   TIGR03999 215 edvvevFekvqke.vkakLllvGdGPerseaeelvkelgle....drvlflGkqdeveellslsDllllpse..kesFGLaaLeamacgvpviasnvgGlpevveegetGflvevgdve...emaekalklledeeklqelkkaalekakerfesekiveqYe 367
                 +  v+vF+k + +  + +L++vG   +r+   e v++++ e     r+++   +++v++++ ++D+ll++    +e   +++ e+m   +pv+++n++G+pe++e+g++G++ + ++     ++ e  +   + ++k  ++  +a ++a ++f+++++v++Y 
  MMETSP1137-20121227|3574_1 233 HWAVQVFKKFAGNrKDVRLIIVGARYQRQYEIEYVEKVKAEadgdPRIEIHDVTSDVDQFYRVADVLLFTXAtlNEVTPMVIAESMMRAIPVVTTNIAGIPEMLEHGKHGYVLPPEEEPfanALKELCVPGADGQRKRLQMGLTAKKHADATFTNRTMVTEYR 395
                 55699**9998651567******998887666666655544111168*********************987623699***********************************99876431002223333334556777789999****************995 PP

>> TIGR04047  MSMEG_0565_glyc: glycosyltransferase, MSMEG_0565 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.5   0.0   2.3e-11   1.1e-08     196     348 ..     220     369 ..     204     395 .. 0.81

  Alignments for each domain:
  == domain 1    score: 32.5 bits;  conditional E-value: 2.3e-11
   TIGR04047 196 vlavGGiEpRKntidlleAfallrkerPdaqLviaGGatLlDydaYreefearaae.leleigavvilGavddaelpaLvrlAdalaf..pslkEGfGLvvlEalAsGvPvvaselaPfteyldeeeavvadpsdpesladalaaaleeaareala 348
                 +l++G + pRKn    ++ f++   +r d++L+i G       ++Y+ e+ +++++  + ++ ++ i  +    ++   +r+Ad+l f  + l E   +v+ E++   +Pvv+ ++a + e+l++ +  ++ p + e +a+al++ + + a  + +
  MMETSP1137-20121227|3574_1 220 LLTLGIVCPRKNQHWAVQVFKKFAGNRKDVRLIIVGARY---QRQYEIEYVEKVKAeADGDP-RIEIHDVTS--DVDQFYRVADVLLFtxATLNEVTPMVIAESMMRAIPVVTTNIAGIPEMLEHGKHGYVLPPEEEPFANALKELCVPGADGQRK 369
                 689999*****************************9875...46777777776665145555.778887765..56799******998335799*************************************************9999876653333 PP

>> TIGR04157  glyco_rSAM_CFB: glycosyltransferase, GG-Bacteroidales peptide system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.3   0.0   4.9e-11   2.2e-08     231     354 ..     221     351 ..     215     394 .. 0.80

  Alignments for each domain:
  == domain 1    score: 31.3 bits;  conditional E-value: 4.9e-11
   TIGR04157 231 lfvGRLdeiKgvkalieaFkkvlkkspncrLvivGd.gdyseylkeakkiwskitftGkld....kekLyelYqiadvGvl..pSlhEqcsyvaiEmlmhglPligttstGlkemiedglsglkiplkekk 354
                 l  G ++  K  + +++ Fkk+  + +++rL+ivG   + ++ ++ ++k+  +     +++      +  ++Y++adv +     l+E    v+ E +m ++P+++t+  G+ em+e+g +g+ +p +e+ 
  MMETSP1137-20121227|3574_1 221 LTLGIVCPRKNQHWAVQVFKKFAGNRKDVRLIIVGArYQRQYEIEYVEKVKAEADGDPRIEihdvTSDVDQFYRVADVLLFtxATLNEVTPMVIAESMMRAIPVVTTNIAGIPEMLEHGKHGYVLPPEEEP 351
                 56677888899999*********************843444456667777777766667772222345679*******887225799************************************99987764 PP

>> TIGR04005  wcaL: colanic acid biosynthesis glycosyltransferase WcaL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.5   0.0   2.6e-09   1.2e-06     215     363 ..     210     355 ..     189     400 .. 0.67

  Alignments for each domain:
  == domain 1    score: 25.5 bits;  conditional E-value: 2.6e-09
   TIGR04005 215 pvkapgtpleiisvarltekkglhvaieacrqlkargvafryrilgigpwerrlr.tlieqyqledvvempgfkpshevkamldd.......advfllpsvtgadgdmegipvalmeamavgipvvstvhsgipelveaeksgwlvp.endaealadr 363
                 +v a  +p+ ++++  +  +k  h a++  +++ ++  + r  i+g   ++r+ +   +e+ + e         p  e++ +  d       adv+l+   t      e  p+ + e+m   ipvv+t  +gipe++e +k g+++p e++    a+ 
  MMETSP1137-20121227|3574_1 210 AVPAGQRPITLLTLGIVCPRKNQHWAVQVFKKFAGNRKDVRLIIVGAR-YQRQYEiEYVEKVKAE-----ADGDPRIEIHDVTSDvdqfyrvADVLLFTXAT----LNEVTPMVIAESMMRAIPVVTTNIAGIPEMLEHGKHGYVLPpEEEPF--ANA 355
                 566677888999999999999999999999999999999988888864.4444331344444433.....33345555555544400011115555554444....34778*********************************987244432..333 PP

>> TIGR04063  stp3: PEP-CTERM/exosortase A-associated glycosyltransferase, Daro_2409 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.3   0.1   6.1e-09   2.8e-06     232     359 ..     236     361 ..     232     396 .. 0.71

  Alignments for each domain:
  == domain 1    score: 24.3 bits;  conditional E-value: 6.1e-09
   TIGR04063 232 vealpallerepdvrlLLvGgGpqeealraqaaelglad....rvvftGrvpheeveryydlidvlvyprksmrltelvtPLkPLeamaqgrlvvasdvGGhreLiedgetGvLfkagdpealaealaklle 359
                 v+ +++++ +++dvrl++vG+  q +   + +++  +++    r+ +   v  ++v+++y + dvl++   +  l + vtP+   e+m +   vv +++ G  e++e+g+ G+++++++ e  a+al++l  
  MMETSP1137-20121227|3574_1 236 VQVFKKFAGNRKDVRLIIVGARYQRQYEIEYVEKVKAEAdgdpRIEIH-DV-TSDVDQFYRVADVLLFTXAT--L-NEVTPMVIAESMMRAIPVVTTNIAGIPEMLEHGKHGYVLPPEE-EPFANALKELCV 361
                 677888999999********9988776555555544433010133332.23.4679************8765..4.569***********************************99876.457777777654 PP

>> TIGR03449  mycothiol_MshA: UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.8   0.0   1.7e-08     8e-06     253     386 ..     248     383 ..     234     396 .. 0.77

  Alignments for each domain:
  == domain 1    score: 22.8 bits;  conditional E-value: 1.7e-08
   TIGR03449 253 elrvlvvGGpsGsglaepealvelaeelGiakrvrflpPrpkeelvevyraadvvav..PsysesfGlvaleaqasGtPvvaarvGGlpvavadGetGllvdGhdpaayadaleklld....ddelrarlgaaavehaak 386
                 ++r+++vG        e+e + ++ +e   + r+ +++ +  +++ ++yr adv+     + +e   +v  e+     Pvv++++ G+p  +++G+ G ++   + + +a+al++l       +++r ++g +a +ha++
  MMETSP1137-20121227|3574_1 248 DVRLIIVGARYQRQ-YEIEYVEKVKAEADGDPRIEIHDVT--SDVDQFYRVADVLLFtxATLNEVTPMVIAESMMRAIPVVTTNIAGIPEMLEHGKHGYVLPP-EEEPFANALKELCVpgadGQRKRLQMGLTAKKHADA 383
                 56666666665555.5566666666666666777776654..56779******986522689************************************98765.6689********7544325678889********974 PP

>> TIGR02149  glgA_Coryne: glycogen synthase, Corynebacterium family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0   1.6e-06   0.00073     273     336 ..     285     350 ..     213     392 .. 0.72

  Alignments for each domain:
  == domain 1    score: 16.6 bits;  conditional E-value: 1.6e-06
   TIGR02149 273 ekeelvellsaaev..fvcPsvyePlGivnleamacetpvvasavGGipevvvdgetGvlveiddd 336
                   +++ +++  a+v  f   ++ e   +v  e+m  ++pvv++++ Gipe++ +g+ G++++++++
  MMETSP1137-20121227|3574_1 285 VTSDVDQFYRVADVllFTXATLNEVTPMVIAESMMRAIPVVTTNIAGIPEMLEHGKHGYVLPPEEE 350
                 3467788888888743667789999999*********************************99983 PP

>> TIGR02470  sucr_synth: sucrose synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.0    0.0001     0.048     646     695 ..     300     349 ..     267     361 .. 0.84

  Alignments for each domain:
  == domain 1    score: 9.6 bits;  conditional E-value: 0.0001
   TIGR02470 646 ifvqpalyeafGltvveamtsglPtfatkfGGpleiiedgvsGfhidPte 695
                 +f   +l e   + + e+m+ ++P ++t+  G  e++e+g+ G+ + P e
  MMETSP1137-20121227|3574_1 300 LFTXATLNEVTPMVIAESMMRAIPVVTTNIAGIPEMLEHGKHGYVLPPEE 349
                 67777888889999******************************998875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (798 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       125  (0.0304729); expected 82.0 (0.02)
Passed bias filter:                      107  (0.0260848); expected 82.0 (0.02)
Passed Vit filter:                        18  (0.0043881); expected 4.1 (0.001)
Passed Fwd filter:                         9  (0.00219405); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.60u 0.15s 00:00:00.75 Elapsed: 00:00:00.72
# Mc/sec: 1462.88
//
Query:       MMETSP1137-20121227|3575_1  [L=78]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (78 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       127  (0.0309605); expected 82.0 (0.02)
Passed bias filter:                      101  (0.0246221); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.24
# Mc/sec: 428.96
//
Query:       MMETSP1137-20121227|3576_1  [L=501]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00029   17.7   0.0      0.002   14.9   0.0    2.3  3  TIGR01251 ribP_PPkin: ribose-phosphate diphosphokinase
  ------ inclusion threshold ------
      0.025   11.4   0.0      0.039   10.8   0.0    1.2  1  TIGR01743 purR_Bsub: pur operon repressor PurR


Domain annotation for each model (and alignments):
>> TIGR01251  ribP_PPkin: ribose-phosphate diphosphokinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0      0.11   2.3e+02      30      65 ..      63      95 ..      55     107 .. 0.71
   2 ?   -3.0   0.0      0.28   5.8e+02      79      97 ..     135     153 ..     132     159 .. 0.80
   3 !   14.9   0.0   9.6e-07     0.002     158     259 ..     259     381 ..     242     419 .. 0.64

  Alignments for each domain:
  == domain 1    score: -1.7 bits;  conditional E-value: 0.11
   TIGR01251 30 kkFadgElyvrie.esvrgkdvfiivqstsapvndal 65
                ++F+ g+ +v+++ +++r++dv++i+++      + l
  MMETSP1137-20121227|3576_1 63 DSFPSGDPNVKLRiDAIRDRDVIFIMSHRT----EYL 95
                67898888887764689**99999954433....444 PP

  == domain 2    score: -3.0 bits;  conditional E-value: 0.28
   TIGR01251  79 saksvtaviPyygYaRqdk 97 
                 s++s+t+v+P y +   ++
  MMETSP1137-20121227|3576_1 135 SVHSLTVVVPWYRFCQMER 153
                 78999*******8876665 PP

  == domain 3    score: 14.9 bits;  conditional E-value: 9.6e-07
   TIGR01251 158 lknlvvvsPDkGaverakk.vakkl...g.lelaiieKeRds...........kenevevtnllgdv.egkdvvivDDiisTggTlvkaaelLke..kGAkkvivaathgv..fsgdAlerla 259
                 ++++ vv PD+Ga +r  + v + l   g +++  i K R             ++   + +++      g  v+i+DD  ++g Tl  +a+++++  +G  +v +++th v  +  + +e + 
  MMETSP1137-20121227|3576_1 259 VSSTFVVFPDHGAHRRFATmVQDCLpgiGaANVLWISKSRVGanitqedgfqySDARGTPHKMASSFpHGSRVLIADDFTNSGSTLFGGADIIRRhaQGEVHVSAYVTHXVakYDTKTVEAFV 381
                 566778888888887644404443322245677788888887777777777552222223333332227999*********************87225777888999**98223334444444 PP

>> TIGR01743  purR_Bsub: pur operon repressor PurR
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   1.9e-05     0.039     190     222 ..     324     356 ..     318     385 .. 0.78

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 1.9e-05
   TIGR01743 190 slkkGskvllvddflkaGGtvkGlielleefda 222
                 s+ +Gs+vl+ ddf ++G t+ G  ++++    
  MMETSP1137-20121227|3576_1 324 SFPHGSRVLIADDFTNSGSTLFGGADIIRRHAQ 356
                 6789*******************9999887654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (501 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        73  (0.0177962); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.14s 00:00:00.52 Elapsed: 00:00:00.32
# Mc/sec: 2066.45
//
Query:       MMETSP1137-20121227|3577_1  [L=183]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (183 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        36  (0.00877621); expected 82.0 (0.02)
Passed bias filter:                       35  (0.00853242); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.17s 00:00:00.34 Elapsed: 00:00:00.41
# Mc/sec: 589.12
//
Query:       MMETSP1137-20121227|3578_1  [L=121]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (121 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        64  (0.0156021); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.10s 00:00:00.25 Elapsed: 00:00:00.80
# Mc/sec: 199.63
//
Query:       MMETSP1137-20121227|3579_1  [L=373]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.6e-09   35.4   1.0    1.8e-08   32.0   0.7    2.0  1  TIGR00027 mthyl_TIGR00027: putative methyltransferase, TIGR00027 family


Domain annotation for each model (and alignments):
>> TIGR00027  mthyl_TIGR00027: putative methyltransferase, TIGR00027 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.0   0.7   4.3e-12   1.8e-08      59     198 ..     160     322 ..     154     361 .. 0.68

  Alignments for each domain:
  == domain 1    score: 32.0 bits;  conditional E-value: 4.3e-12
   TIGR00027  59 dfvavRtrffDdflleavaagvr.....qvViLgAGlDtRAyRldwpe.gt...rvFEvDqpevlefKekvlkelgaepp......ahrraVavDlr..qd.....wpaaLaaaGfdaeaptawlaeGllvYLteeavdalla.fiaelsapGSrlafdvvek 198
                 +++a+R  f+D+ l+  v+++++      v++LgAG+D R  R   ++ ++   r  EvD++ v++ K++ l++  ++ p      +++   a++l   ++       a L++a   + + +++++e+ll+YL+e+  +all+  ++e+ ++G r +  ++ +
  MMETSP1137-20121227|3579_1 160 QNIAIRSAFLDAALKTEVRQNADdgtktSVIVLGAGFDGRGLRRMALTpEIepdRWAEVDLESVVQQKRALLQRALRRRPdllalsKRISWHAANLSnaEEargavCDALLQDAQATSPRSVVYVCEALLIYLPEASARALLSaAVDEAVGAGARRVSFCFAD 322
                 789***********998877665222236999**********854443355222677***************998776541222215566667888653441111133446666666667789*****************99636999999998755544433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (373 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        93  (0.0226719); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.31u 0.16s 00:00:00.47 Elapsed: 00:00:00.65
# Mc/sec: 757.41
//
Query:       MMETSP1137-20121227|3580_1  [L=296]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.1e-12   44.4   0.0    1.3e-12   44.2   0.0    1.0  1  TIGR03903 TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
     0.0025   15.1   0.0     0.0032   14.8   0.0    1.2  1  TIGR03724 arch_bud32: Kae1-associated kinase Bud32


Domain annotation for each model (and alignments):
>> TIGR03903  TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.2   0.0   6.4e-16   1.3e-12       3     180 ..      33     199 ..      31     235 .. 0.76

  Alignments for each domain:
  == domain 1    score: 44.2 bits;  conditional E-value: 6.4e-16
   TIGR03903   3 ghkvaikllRedaaeeerlvaRFrReialCarLshPnivaLlDsGeaedgllFavFeyveGrtlrevLaadG.aLpaaetgrLmlqvLDalaaahdaGvvhRDLkPqnimvsaadveshakvLDFGigaLlpgvedadeatltrttevlGsPaYaaPeqLRgepvtak.sDlYaWGLivl 180
                 gh va+k +R+   +   l a   Re+ + +++shPn+ +Ll +   +   l  v  + + + l+ vL ++  ++p++   ++ +  L +l a h+  +vhRD+kP n+++ a +     ++ DFG + Llp         lt+    + +  Y aPe L g     k  D++a G ++ 
  MMETSP1137-20121227|3580_1  33 GHVVALKKVRIR--DVRMLPAAALRELLALQQISHPNVLELLGQYTHGA-NLVLVMPFLP-LSLATVLEQQHlPMPSERVREIAIMLLSGLVACHESDLVHRDIKPANLLIDAHGRL---QIADFGQSRLLPKDAG---GSLTA---QVATRWYRAPELLFGSRYYGKgVDIWASGCVIA 199
                 799*******99..44556677789*****************9988888.5667999998.89999998876267777777788999************************888865...577********96444...44444...356777888887777655444246666666655 PP

>> TIGR03724  arch_bud32: Kae1-associated kinase Bud32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   1.6e-06    0.0032     103     137 ..     119     154 ..      42     161 .. 0.81

  Alignments for each domain:
  == domain 1    score: 14.8 bits;  conditional E-value: 1.6e-06
   TIGR03724 103 vgklHkagivhgDlttsNiiv.kddklyliDfGLgk 137
                 +  +H+ ++vh D+ ++N+++  +++l + DfG ++
  MMETSP1137-20121227|3580_1 119 LVACHESDLVHRDIKPANLLIdAHGRLQIADFGQSR 154
                 4679*****************5588999****9775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (296 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        58  (0.0141394); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.24u 0.14s 00:00:00.38 Elapsed: 00:00:00.38
# Mc/sec: 1028.13
//
Query:       MMETSP1137-20121227|3581_1  [L=166]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (166 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        70  (0.0170648); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.14s 00:00:00.33 Elapsed: 00:00:00.41
# Mc/sec: 534.39
//
Query:       MMETSP1137-20121227|3582_1  [L=888]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.7e-08   31.6   1.3    1.7e-08   31.6   0.9    2.2  2  TIGR00895 2A0115: MFS transporter, aromatic acid:H+ symporter (AAHS) family
    3.6e-08   30.5   1.4    3.6e-08   30.5   1.0    2.7  3  TIGR00898 2A0119: cation transport protein
    9.5e-06   22.7   0.1    9.5e-06   22.7   0.1    2.2  2  TIGR00881 2A0104: phosphoglycerate transporter family protein
     0.0015   14.3   3.8      0.011   11.4   0.1    2.3  2  TIGR01299 synapt_SV2: synaptic vesicle protein SV2


Domain annotation for each model (and alignments):
>> TIGR00895  2A0115: MFS transporter, aromatic acid:H+ symporter (AAHS) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.6   0.9   1.7e-11   1.7e-08      53     232 ..     174     360 ..     119     370 .. 0.72
   2 ?   -3.0   6.5      0.55   5.6e+02     290     397 ..     613     732 ..     585     733 .. 0.63

  Alignments for each domain:
  == domain 1    score: 31.6 bits;  conditional E-value: 1.7e-11
   TIGR00895  53 elGfllsagLiGmvlGallfgplaDrigRkrvllvsillfsvftlasalatnvtqLlvlRflaglGlGgllpnliaLvsEyapkrfratvvglvavGya....iGaavggllaal.lipafgWr..slflvggiiplllllllikvLpEsikflvekkpekvrkilnaiapslqaeaqs...elaeekse 232
                  +G l ++ ++G +  a l g++aDr+gR+rvll+s+  ++++ +  +l+ +++  l +R l    l g +  ++ L  E  ++r +a v+g+v++  +    +G a+gg+  ++   p+f     sl+ vg  ++++    ++  LpE  k l  +++++ r++ ++   ++++ + +    la+++s+
  MMETSP1137-20121227|3582_1 174 VAGLLPTFLIMGRIPTAALWGVAADRFGRRRVLLLSLSSIAAGNIFFGLSRSLWLALTVRCLLLGALNGWTSVMVLLCGELGGDR-QADVIGYVFSTGQllnlVGPALGGFTYGVgFGPTFPALlpSLLGVG--VAMVAFTATALYLPETSKSLLARQESQRRQRASEHRSEAERGQLEadqMLAQQTSS 360
                 36888999**********************************************9999999986668888988888999988887.6899999987655122267777777655436788875411455555..7777778888999**99999999888888888887776666555433244444443 PP

  == domain 2    score: -3.0 bits;  conditional E-value: 0.55
   TIGR00895 290 llvllnvGg...vlgslllgaladrlgpk.vlalllllaav...favlvvs.tlssptllllllvilGl...fvngaqsgllalmaefYpt.aiRatgvgwaigiGrlgaiigpilagvl 397
                  ++l+ +G+   ++ s ++g  + rlg + +l++++++a++   f+ lv + ++ s++ +ll +++l +    +  a sg+la++ ++ ++  + +t +g++  +  +g ++gp+ ++ l
  MMETSP1137-20121227|3582_1 613 GMMLTAAGAgslLFTSTFIGPCVRRLGARsALVVGSVVAGIaivFIPLVRApFIPSTAAMLLSALLLSInsaSILCAASGVLAASNNILASlPNVGTVQGVLATVEGIGKMLGPAAVAPL 732
                 333333332222567778888888998888788888877752124555666555566666655555554111344566666677766666525678888888888888888888888766 PP

>> TIGR00898  2A0119: cation transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.5   1.0   3.5e-11   3.6e-08     126     230 ..     173     273 ..      57     279 .. 0.81
   2 ?   -0.6   0.1      0.09        93     481     503 ..     303     325 ..     295     328 .. 0.83
   3 ?   -0.8   0.5       0.1     1e+02     378     408 ..     634     664 ..     590     689 .. 0.74

  Alignments for each domain:
  == domain 1    score: 30.5 bits;  conditional E-value: 3.5e-11
   TIGR00898 126 wkvkltqsvvfvGvLlGslvlGqlsDrfGRkkvLllstlvtavsgvltafspnytvflvlrlLvGvgiagivvvalvLitEflpkkaRaivgilievffalGlll 230
                 +++ l+ + + +G +  ++++G  +DrfGR++vLlls    a+ ++   +s +++  l +r L   ++ g +++++vL    l+    a    +i ++f+ G+ll
  MMETSP1137-20121227|3582_1 173 FVAGLLPTFLIMGRIPTAALWGVAADRFGRRRVLLLSLSSIAAGNIFFGLSRSLWLALTVRCLLLGALNG-WTSVMVLLCGELGGDRQAD---VIGYVFSTGQLL 273
                 45678899999**************************************************998888899.8888888776666544333...345677777765 PP

  == domain 2    score: -0.6 bits;  conditional E-value: 0.09
   TIGR00898 481 fgvlallagllsllLPetkgvaL 503
                  gv+++ + +++l LPet ++ L
  MMETSP1137-20121227|3582_1 303 VGVAMVAFTATALYLPETSKSLL 325
                 58999999**********99876 PP

  == domain 3    score: -0.8 bits;  conditional E-value: 0.1
   TIGR00898 378 lidrLgRrktmaaslllagvallllllvpee 408
                  ++rLg r ++++  ++ag+a++++ lv   
  MMETSP1137-20121227|3582_1 634 CVRRLGARSALVVGSVVAGIAIVFIPLVRAP 664
                 5899999999999999999999999888765 PP

>> TIGR00881  2A0104: phosphoglycerate transporter family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.7   0.1   9.3e-09   9.5e-06      49     209 ..     192     355 ..     184     359 .. 0.80
   2 ?    0.0   2.7     0.072        74      27     166 ..     607     760 ..     593     806 .. 0.56

  Alignments for each domain:
  == domain 1    score: 22.7 bits;  conditional E-value: 9.3e-09
   TIGR00881  49 vvgvvsDrvsarvflaigLilvaivnlflgfssslwvlial.lalnGlfqglgwppcgrlltkwfsrserGtvvaiwnishnvggallpplvllaialllswhvvfivpgiiaiivslilll...llrdspqsvglpkleelrnee.keedkekkeeeltkkeill 209
                 + gv++Dr + r +l++ L  +a+ n+f+g s slw+ + + ++l G ++g  ++++  l  ++   ++   +  ++++++ + +   + l  +   + +      ++p+++++ v+++++    l+ ++  +  l   e +r +  +e+ +e +  +l++ + l+
  MMETSP1137-20121227|3582_1 192 LWGVAADRFGRRRVLLLSLSSIAAGNIFFGLSRSLWLALTVrCLLLGALNGWTSVMVL-LCGELGGDRQADVIGYVFSTGQLLNLVGPA-LGGFTYGVGFGPTFPALLPSLLGVGVAMVAFTataLYLPETSKSLLARQESQRRQRaSEHRSEAERGQLEADQMLA 355
                 679*********************************8666515678999999888776.77888888888888889*****99999988.8899999999999999**********99998622255566666666666666555546666666666666666655 PP

  == domain 2    score: 0.0 bits;  conditional E-value: 0.072
   TIGR00881  27 lsktdlGlllsaf.siaYgiskfvvgvvsDrvsarvflaigLilvaivnlflgfss.....slwvliallalnGlfqglgwppcgrlltk....wfsrserGtvvaiwnishnvggallpplvllaialllswhvv....fivpgiiaiivsli 166
                 l +++lG++l+a  +    +  + +g    r +ar  l +g + ++i+ +f+  +      s +++++  +l  +  +     +  +l++    + s  + Gtv +++++ + +g  l p  v+  +a+ +s + +    +i +g+    ++l 
  MMETSP1137-20121227|3582_1 607 LGEEQLGMMLTAAgAGSLLFTSTFIGPCVRRLGARSALVVGSVVAGIAIVFIPLVRapfipSTAAMLLSALLLSINSASILCAASGVLAAsnniLASLPNVGTVQGVLATVEGIGKMLGPAAVAPLLAFCISSRPLeqtsLITSGAFFTFLGLA 760
                 6677788766654233444556667777889999999999999999998888777666777556665555555544433332222222221222677788899999998765555555554444444444444433333355555443333332 PP

>> TIGR01299  synapt_SV2: synaptic vesicle protein SV2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.4   0.1   1.1e-05     0.011     204     241 ..     175     212 ..     167     219 .. 0.89
   2 !    5.2   0.9   0.00085      0.87     634     739 ..     210     323 ..     209     326 .. 0.81

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 1.1e-05
   TIGR01299 204 kgllglivylgmmvgaflwggladklgrkqsllislsv 241
                  gll + + +g +  a lwg  ad+ gr++ ll+sls 
  MMETSP1137-20121227|3582_1 175 AGLLPTFLIMGRIPTAALWGVAADRFGRRRVLLLSLSS 212
                 588888999999***********************985 PP

  == domain 2    score: 5.2 bits;  conditional E-value: 0.00085
   TIGR01299 634 lsgvscfflsfgtsesamial..lclynglsiaawnaldvltvelypsdkratafgflnalcklaavlgili..ftslvsitkaipillas.....avlvlgsllalklpetrtq 739
                 ls++++  ++fg s s+ +al   cl  g ++  w ++ vl       d++a  +g++ +  +l  ++g ++  ft  v+   + p ll s      ++v  ++ al lpet   
  MMETSP1137-20121227|3582_1 210 LSSIAAGNIFFGLSRSLWLALtvRCLLLG-ALNGWTSVMVLLCGELGGDRQADVIGYVFSTGQLLNLVGPALggFTYGVGFGPTFPALLPSllgvgVAMVAFTATALYLPETSKS 323
                 788999999*******9887622699998.689********99999******************999998765588889999999988877322224566667788999999765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (888 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       134  (0.032667); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.58u 0.14s 00:00:00.72 Elapsed: 00:00:00.56
# Mc/sec: 2092.97
//
Query:       MMETSP1137-20121227|3583_1  [L=409]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (409 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       174  (0.0424183); expected 82.0 (0.02)
Passed bias filter:                      138  (0.0336421); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.18s 00:00:00.48 Elapsed: 00:00:00.69
# Mc/sec: 782.37
//
Query:       MMETSP1137-20121227|3585_1  [L=405]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (405 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       126  (0.0307167); expected 82.0 (0.02)
Passed bias filter:                      114  (0.0277913); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.12s 00:00:00.42 Elapsed: 00:00:00.42
# Mc/sec: 1272.75
//
Query:       MMETSP1137-20121227|3586_1  [L=137]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (137 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        74  (0.01804); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.16s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 623.53
//
Query:       MMETSP1137-20121227|3589_1  [L=320]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (320 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        84  (0.0204778); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.15s 00:00:00.39 Elapsed: 00:00:00.30
# Mc/sec: 1407.88
//
Query:       MMETSP1137-20121227|3590_1  [L=118]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.8e-05   21.6   0.0      2e-05   21.5   0.0    1.0  1  TIGR00115 tig: trigger factor
     0.0022   15.2   0.0     0.0022   15.2   0.0    1.1  1  TIGR03516 ppisom_GldI: peptidyl-prolyl isomerase, gliding motility-associated


Domain annotation for each model (and alignments):
>> TIGR00115  tig: trigger factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.5   0.0   9.6e-09     2e-05     135     206 ..      10      86 ..       3      97 .. 0.83

  Alignments for each domain:
  == domain 1    score: 21.5 bits;  conditional E-value: 9.6e-09
   TIGR00115 135 reqnatlvpverdaaekgDivtidfeg..kvdGeafeggka...edfelelgsgqfipgfeeqlvGmkaGeekeikv 206
                 +  ++tl++    ++ kg +vt+  +g  k+ G++f ++k    + f ++ g gq+i g +++l+Gmk Gee+e+ +
  MMETSP1137-20121227|3590_1  10 KTTRRTLKEGSGASVVKGATVTVHATGivKETGKKFWSTKDpgqQPFTYQAGVGQVITGWDQGLLGMKLGEERELLI 86 
                 5667778877755999***********65569****99987555889**************************9755 PP

>> TIGR03516  ppisom_GldI: peptidyl-prolyl isomerase, gliding motility-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0   1.1e-06    0.0022      98     155 ..      37      96 ..       6     118 .] 0.76

  Alignments for each domain:
  == domain 1    score: 15.2 bits;  conditional E-value: 1.1e-06
   TIGR03516  98 ikaldgdviyskeelgpk..tykvdqedlisGlrdglklmkegeevtfllPsykayGyyG 155
                 i +  g+  +s ++ g++  ty+    ++i+G  +gl  mk gee  +l+P+ ++yG  G
  MMETSP1137-20121227|3590_1  37 IVKETGKKFWSTKDPGQQpfTYQAGVGQVITGWDQGLLGMKLGEERELLIPADEGYGQKG 96 
                 66667788888888776544888888*******************************887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (118 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        75  (0.0182838); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.16u 0.14s 00:00:00.30 Elapsed: 00:00:00.28
# Mc/sec: 556.24
//
Query:       MMETSP1137-20121227|3591_1  [L=871]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.6e-84  280.8  12.0    8.8e-79  263.6  10.4    3.0  2  TIGR00930 2a30: K-Cl cotransporter
      3e-10   37.0   5.5    6.2e-10   35.9   3.8    1.4  1  TIGR00906 2A0303: cationic amino acid transport permease
    2.3e-07   27.8  14.6    4.4e-05   20.3   3.7    2.2  2  TIGR00905 2A0302: transporter, basic amino acid/polyamine antiporter (APA) family
    1.8e-05   21.2   2.7    1.8e-05   21.2   1.9    2.2  3  TIGR00911 2A0308: L-type amino acid transporter
    0.00011   18.9  17.9     0.0012   15.5   7.8    2.4  2  TIGR00913 2A0310: amino acid permease (yeast)
  ------ inclusion threshold ------
      0.052   10.4  10.1      0.015   12.2   4.3    1.8  2  TIGR00814 stp: serine transporter


Domain annotation for each model (and alignments):
>> TIGR00930  2a30: K-Cl cotransporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  263.6  10.4   1.3e-81   8.8e-79      70     485 ..      54     477 ..      35     486 .. 0.86
   2 !    5.2   0.0    0.0015       1.1     640     678 ..     623     661 ..     593     734 .. 0.81

  Alignments for each domain:
  == domain 1    score: 263.6 bits;  conditional E-value: 1.3e-81
   TIGR00930  70 kekakavklGtlkGvllrCllnifGvilflRlsWivgqAGiglslvivllsavvtlltalslsAiatnGvvkgGGsYylisRsLGPEfGgsiGliFalanavavamyvlGaietlldllkeeasklsvdelndiriiGtvvvvvlllivvaGveyvnkaavlllvivllsilaivvGtiisakdkkakgivslkaeifsen................................................eipgireaeggffslvaifFPsvtGilAGanisgdLkDaqkaiPkGtllAilittvvYlssvvlvgacvvrdalgdlndklvsavtslacfseceketckygllnnlvvmslvspfpplivaGiflatlsaaLasLvsaprllqalakDnilpllqvFgkgkgkngEPlrallltaliallfiliaeLdliaPiisnFfLasYalvnlscflasl 485
                 +++a+  +l tl+G +++Cllni+G +lflR+ + vg  G + +l +  +s +++ lt  s sA+ tnG + +GG+Yy+isRsLGP fGgs Gl+F ++  v v+++++ + +t+++ + ++++++s    n i i  + ++ vl+l+++ G    ++++ +++v++ ls++a  +Gt+  +++ k   +++ + + +s +                                                 +++  + e +   +++i FP+v G++ Gan sgdL+++ ++iP Gt++A+ ++ + Yl  +v  +a+v r       d+l+                      +  v+    +p+  l+v G+ +a ls+aL s+ +++r+lqa+a+Dn++p++++F+ g+        a++l++lia l+i i++Ld +aPi++nFfL++Y+l nl++f  ++
  MMETSP1137-20121227|3591_1  54 SAPAQKNNLSTLNGCYIPCLLNILGAVLFLRVGFAVGVLGALGALAVFSFSELIAYLTISSFSALVTNGRMAAGGAYYMISRSLGPAFGGSSGLLFWFTYCVNVTFNTVAFTQTITSTFFDKEQDTS---ANRIAI-SSGTLFVLFLVALKGAAAFARVNLFIFVCLALSLCA-AIGTLWFSRHAK---LLTADLSLLSAHaphtsgvfrpfawsaecasspwhplavgnvscatsgryglrevllpatVESEQCGGECSLGDVFGIVFPAVVGMMEGANLSGDLREPGRSIPMGTFAAVSTAFICYLLLIVGQAATVDR-------DSLIY---------------------DMNVMQHACWPSQYLVVLGVTAACLSTALGSMFGSARILQAMARDNLFPFVRFFAAGRRA----SAAVVLSYLIAQLGIFIGDLDAVAPILTNFFLVTYTLTNLAAFFLEI 477
                 445888999************************************************************************************************************9988888444...445554.56677889999**********************865.789987655432...33444444444444556899999999999988888888888888888888888887777655555555555999*********************************************999988888884.......55666.....................222334567**********************************************99875....89****************************************98776 PP

  == domain 2    score: 5.2 bits;  conditional E-value: 0.0015
   TIGR00930 640 afyevvvaeklreGvraliqaaGlGrlkpntlvlgykkd 678
                 +f ++vv+e+ r  ++ l  +aGlG l p t vl  +++
  MMETSP1137-20121227|3591_1 623 SFEQQVVGETWRAAIANLALSAGLGTLTPHTFVLPLPES 661
                 799******************************988876 PP

>> TIGR00906  2A0303: cationic amino acid transport permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.9   3.8   9.1e-13   6.2e-10     258     422 ..     313     471 ..     308     482 .. 0.82

  Alignments for each domain:
  == domain 1    score: 35.9 bits;  conditional E-value: 9.1e-13
   TIGR00906 258 cfyafvGfdaiattgeevknPqkaiPigivtsllvifvayvlvsaaltlmlPyqlldedaplavafeyv.gwevakyivavGalaalstsllgsafalprvvyamaedgllfkflakinsktktPinatvvsgaiaallaflfdlkalvdllsigtllayslvavc 422
                 +f a vG+   a  + + + P+++iP+g+++++   f++y+l+ +  +      ++d d+ +     ++    +++y+v +G  aa +++ lgs+f+ +r++ ama+d+l+ +f+    + ++   +a v s +ia l  f+ dl a++ +l+   l+ y+l  ++
  MMETSP1137-20121227|3591_1 313 VFPAVVGMMEGANLSGDLREPGRSIPMGTFAAVSTAFICYLLLIVGQA-----ATVDRDSLIYDMNVMQhACWPSQYLVVLGVTAACLSTALGSMFGSARILQAMARDNLF-PFVRFFAAGRR-ASAAVVLSYLIAQLGIFIGDLDAVAPILTNFFLVTYTLTNLA 471
                 78889999888999999***********************98876654.....67899997755444440445689********************************985.55555554444.4468888899999999************99999999998766 PP

>> TIGR00905  2A0302: transporter, basic amino acid/polyamine antiporter (APA) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   3.7   6.4e-08   4.4e-05      61     185 ..     115     239 ..     104     254 .. 0.75
   2 !   12.6   1.2   1.3e-05    0.0091     215     348 ..     321     447 ..     308     487 .. 0.67

  Alignments for each domain:
  == domain 1    score: 20.3 bits;  conditional E-value: 6.4e-08
   TIGR00905  61 faklatkkpeldgGvyaYaregfgeyigFssawgYwlsavignvayavllvsa..lgyflplfksgnplas.ilaasvllWvvtflvlrGvrqaaaintittvakliPlvlfiilglflFkldlftad 185
                 f  l t      gG y     ++g+++g ss+  +w++  + nv++ ++++     ++f++  k++++ a  i + s +l v++++ l+G+   a++n++  v+  + l++ i   +f  +++l tad
  MMETSP1137-20121227|3591_1 115 FSALVTNGRMAAGGAYYMISRSLGPAFGGSSGLLFWFTYCV-NVTFNTVAFTQtiTSTFFD--KEQDTSANrIAISSGTLFVLFLVALKGAAAFARVNLFIFVCLALSLCAAIGTLWFSRHAKLLTAD 239
                 666666666667888888888****************8765.9*****9997522689999..6655555515567889********************97777666655554444444445555555 PP

  == domain 2    score: 12.6 bits;  conditional E-value: 1.3e-05
   TIGR00905 215 iEgAvvlsaraknksdvgkAtvlgllsvlviyilitllslGvltqqeLaelknpsmaavleavvgk.w.gavlislgliisvlgallsWtllvaevlllaakdgllPkifgkvnkkkapskallltaivvqlllll 348
                 +EgA ++++  +  ++++  t  ++ ++ + y+l  + ++  ++++ L        ++ ++ +    w +++l+ lg+  ++l++ l+ ++  a +l ++a+d+l+P + +   +   +s+a++l+ ++ ql +++
  MMETSP1137-20121227|3591_1 321 MEGANLSGDLREPGRSIPMGTFAAVSTAFICYLLLIVGQAATVDRDSL--------IYDMNVMQHAcWpSQYLVVLGVTAACLSTALGSMFGSARILQAMARDNLFPFV-RFFAAGRRASAAVVLSYLIAQLGIFI 447
                 588888888888899999888888888888887755444444444444........4444433332143689***********************************44.33344444555666666666655544 PP

>> TIGR00911  2A0308: L-type amino acid transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -5.7   3.8       3.7   2.5e+03      43     201 ..      57     215 ..      40     233 .. 0.58
   2 !   21.2   1.9   2.6e-08   1.8e-05     261     396 ..     326     455 ..     308     484 .. 0.75
   3 ?   -3.3   0.0      0.74     5e+02     308     336 ..     619     648 ..     613     654 .. 0.81

  Alignments for each domain:
  == domain 1    score: -5.7 bits;  conditional E-value: 3.7
   TIGR00911  43 alkkeitllsgvsiiv.gtiiGsGiFvspkgvlkeagsvGlalivWavtgilsivGalvYaElGttipk.sGGeyaYllevfgklka...FlklwiellvirpgsaavvalvfatylLkPvfadcevpelairlvavlvvllltlvnslsvklatrvqdiltaa 201
                 a k +++ l+g+ i +  +i+G+ +F+     +   g+ G al v++ + +++ + + ++  l t     +GG y  +    g+       l +w++       +   ++++f++ +   +f + + +  +   ++  ++++l+lv      + +rv+ ++ ++
  MMETSP1137-20121227|3591_1  57 AQKNNLSTLNGCYIPClLNILGAVLFLRVGFAVGVLGALG-ALAVFSFSELIAYLTISSFSALVTNGRMaAGGAYYMISRSLGPAFGgssGLLFWFTY----CVNVTFNTVAFTQTITSTFFDKEQDTSANRIAISSGTLFVLFLVALKGAAAFARVNLFIFVC 215
                 5566777777777755246777777776555555556666.677777888888888888877777655414555555555444432200023344443....34556677788888777555555555555445666666666666655555556665544443 PP

  == domain 2    score: 21.2 bits;  conditional E-value: 2.6e-08
   TIGR00911 261 vteEvknPvrtlpiaiiislvivtlvYvltniAYfavlskeellaseavAvdFaerllGvvklivpvlvglsafGsvngslFsssRlifvaarEGhlPsllsmihvkkltp..lpsllivctltllaalsgDiyslin 396
                 + +++ +P r++p+  + ++++  + Y+l  +   a++ ++ l+    v    +++     +++v + v+++++ + +gs+F s+R++++ ar+  +P++ +++  ++ ++  +    +  +++ l  + gD+  +  
  MMETSP1137-20121227|3591_1 326 LSGDLREPGRSIPMGTFAAVSTAFICYLLLIVGQAATVDRDSLIYDMNV----MQHACWPSQYLVVLGVTAACLSTALGSMFGSARILQAMARDNLFPFVRFFAAGRRASAavV----LSYLIAQLGIFIGDLDAVAP 455
                 56899************************************99988554....45555567788888999***********************************999887542....33333333333333333333 PP

  == domain 3    score: -3.3 bits;  conditional E-value: 0.74
   TIGR00911 308 avAvdFaerllGvvklivpvlvglsa.fGs 336
                  vA +F ++++G+  +++ +  +lsa +G+
  MMETSP1137-20121227|3591_1 619 TVALSFEQQVVGETWRAAIANLALSAgLGT 648
                 6999********999999999999974555 PP

>> TIGR00913  2A0310: amino acid permease (yeast)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   7.8   1.7e-06    0.0012      18     148 ..      77     212 ..      72     227 .. 0.82
   2 !    7.1   0.3   0.00063      0.43     300     351 ..     392     442 ..     326     474 .. 0.82

  Alignments for each domain:
  == domain 1    score: 15.5 bits;  conditional E-value: 1.7e-06
   TIGR00913  18 igtGllvgsgkalstaGPaglligyllvgsiiyaviqslgElatlipvssgsfatyasrfvdpalgfavgltYllqwlivlplelvaaslvi..qywteskvnlavfiaifyvvivvinlf...gvkvygEaefvl 148
                 +g+ l++  g a+   G +g+l  +++   i+y +i s++ l+t   + +g+   + sr + pa+g + gl +++++++ +  + va +++i   ++ +++ ++a  iai + ++ v+ l+   g+ +++ ++ ++
  MMETSP1137-20121227|3591_1  77 LGAVLFLRVGFAVGVLGALGALAVFSFSELIAYLTISSFSALVTNGRMAAGGAYYMISRSLGPAFGGSSGLLFWFTYCVNVTFNTVAFTQTItsTFFDKEQDTSANRIAISSGTLFVLFLValkGAAAFARVNLFI 212
                 78889****************************************999999999999*****************************99999844599988888999999987665555554000555555555444 PP

  == domain 2    score: 7.1 bits;  conditional E-value: 0.00063
   TIGR00913 300 isvlsvansslyassRlllalakqgkaPkvleyvdrrGvPlvavivsslfgl 351
                  ++ls a +s++ s+R+l+a+a+++  P v        +  +av++s l++ 
  MMETSP1137-20121227|3591_1 392 AACLSTALGSMFGSARILQAMARDNLFPFV-RFFAAGRRASAAVVLSYLIAQ 442
                 5789*********************99954.223323334455666666555 PP

>> TIGR00814  stp: serine transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   4.3   2.2e-05     0.015      21     159 ..      80     220 ..      74     237 .. 0.85
   2 ?   -1.4   0.1       0.3     2e+02      69     115 ..     432     479 ..     418     493 .. 0.78

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 2.2e-05
   TIGR00814  21 vlflPi..qaGlkGlwvlllmaiiaypltylahralakfvlsskesaeditevveeyfGkkaGilitllYFlaivpilliYsvaitntvesflkkqlvlaallrallslvlilvlvaivlfgekllvkimsvlvfplvlil 159
                 vlfl +   +G+ G++  l++      ++yl+   +  +v+++  +a++   +++  +G   G   +ll++++ ++ +   +va t t++s + ++ + ++ +r  +s   + vl +++l g+ +  ++  ++ + l l+l
  MMETSP1137-20121227|3591_1  80 VLFLRVgfAVGVLGALGALAVFSFSELIAYLTISSFSALVTNGRMAAGGAYYMISRSLGPAFGGSSGLLFWFTYCVNVTFNTVAFTQTITSTFFDKEQDTSANRIAISSGTLFVLFLVALKGAAAFARVNLFIFVCLALSL 220
                 78887722466666666665555566699*************************************************************9999999999999*99999999****************9877665555544 PP

  == domain 2    score: -1.4 bits;  conditional E-value: 0.3
   TIGR00814  69 tevveeyfGkkaGilitllYFla.ivpilliYsvaitntvesflkkql 115
                 + vv +y+ ++ Gi+i+ l  +a i++  ++ + ++tn  + fl+  +
  MMETSP1137-20121227|3591_1 432 AAVVLSYLIAQLGIFIGDLDAVApILTNFFLVTYTLTNLAAFFLEISG 479
                 578999999999****99998875777888889999998888887655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (871 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       104  (0.0253535); expected 82.0 (0.02)
Passed bias filter:                       44  (0.0107265); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.66u 0.15s 00:00:00.81 Elapsed: 00:00:01.06
# Mc/sec: 1084.55
//
Query:       MMETSP1137-20121227|3592_1  [L=125]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.7e-14   50.8   0.0    3.1e-14   50.7   0.0    1.0  1  TIGR01622 SF-CC1: splicing factor, CC1-like family
    2.6e-11   41.2   0.1    2.8e-11   41.1   0.1    1.0  1  TIGR01628 PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family
    4.1e-10   36.6   0.0    4.6e-10   36.4   0.0    1.0  1  TIGR01642 U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor
    1.1e-07   29.0   0.0    1.3e-07   28.8   0.0    1.0  1  TIGR01649 hnRNP-L_PTB: hnRNP-L/PTB/hephaestus splicing factor family
    2.2e-07   28.6   0.1    2.7e-07   28.4   0.1    1.1  1  TIGR01659 sex-lethal: sex-lethal family splicing factor
    2.5e-06   25.1   0.0      3e-06   24.9   0.0    1.1  1  TIGR01661 ELAV_HUD_SF: ELAV/HuD family splicing factor
    1.1e-05   22.2   0.1    1.3e-05   22.0   0.0    1.1  1  TIGR01648 hnRNP-R-Q: hnRNP-R, Q splicing factor family


Domain annotation for each model (and alignments):
>> TIGR01622  SF-CC1: splicing factor, CC1-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.7   0.0   5.3e-17   3.1e-14     219     320 ..      16     114 ..       2     124 .. 0.82

  Alignments for each domain:
  == domain 1    score: 50.7 bits;  conditional E-value: 5.3e-17
   TIGR01622 219 dlkLYvGnlhfnitEqeLrqiFepFGeielvqlqkDpetGrskGyGFiqFsdaeeakeAleklNGlelAGReikvglasDvteesdaslaskfedsfdeseq 320
                 ++ LYv nl f it +e+ +iF  FG i +++l   ++t   +G  F+ ++d   ak+A  +l G+++ GR + v + + ++ ++  ++++++++  +  e+
  MMETSP1137-20121227|3592_1  16 NRALYVRNLPFKITTEEMYDIFGKFGAIRQIRLGNASDT---RGTAFVVYEDIYDAKNAVDHLSGFNVCGRYLVVLYYQQTKMQKRLDTEKEQRELAEMREK 114
                 578**********************************99...**********************************99986665555445444442233344 PP

>> TIGR01628  PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.1   0.1   4.7e-14   2.8e-11     180     276 ..      18     107 ..       4     123 .. 0.72

  Alignments for each domain:
  == domain 1    score: 41.1 bits;  conditional E-value: 4.7e-14
   TIGR01628 180 NlYvKnlddsvtedklrelFakfGeitSaivkkdeknrkrgfafvnyekaedAkkAveelngkkitlaatgkilyVgraqkraeReaelkakfeelk 276
                  lYv+nl+ ++t +++ ++F+kfG i  +     ++  +rg afv ye+  dAk+Av++l g ++   +   +ly ++ + +++ + e ++ +   +
  MMETSP1137-20121227|3592_1  18 ALYVRNLPFKITTEEMYDIFGKFGAIRQIRL--GNASDTRGTAFVVYEDIYDAKNAVDHLSGFNVC-GRYLVVLYYQQTKMQKRLDTEKEQ-R---E 107
                 59************************97665..55666679*********************9998.334455555443322222222221.1...1 PP

>> TIGR01642  U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.4   0.0   7.8e-13   4.6e-10     293     394 ..      13     111 ..       2     120 .. 0.87

  Alignments for each domain:
  == domain 1    score: 36.4 bits;  conditional E-value: 7.8e-13
   TIGR01642 293 ldsedklyignLPldlkddqvkeLLesFGdLkaFnliKdlatGlsKGyaFceykdssvtdlAiaaLnGiklgdkkLnvkrAtvgakqatiekensdvlvtll 394
                 ++ +  ly+ nLP++++ + + ++  +FG ++   l    +    +G aF++y+d+ +++ A+  L G+++ ++ L v    + + q  +++e+ +  ++++
  MMETSP1137-20121227|3592_1  13 PEVNRALYVRNLPFKITTEEMYDIFGKFGAIRQIRLG---NASDTRGTAFVVYEDIYDAKNAVDHLSGFNVCGRYLVVLYYQQTKMQKRLDTEKEQRELAEM 111
                 5566779*****************9999999987775...555679*********************************************99977777765 PP

>> TIGR01649  hnRNP-L_PTB: hnRNP-L/PTB/hephaestus splicing factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.8   0.0   2.2e-10   1.3e-07     300     385 ..      18     104 ..       3     110 .. 0.86

  Alignments for each domain:
  == domain 1    score: 28.8 bits;  conditional E-value: 2.2e-10
   TIGR01649 300 VllvsnLeeekvtpdalFnlfgvYGdvervki..lknkketalvemadpqqaqlalthLdkvklfgkklrvavSkqeavqlpkefqld 385
                  l v nL + k+t+++++ +fg +G ++++++      ++ta+v + d ++a++a++hL + ++ g+ l v   +q+ +q   + +++
  MMETSP1137-20121227|3592_1  18 ALYVRNL-PFKITTEEMYDIFGKFGAIRQIRLgnASDTRGTAFVVYEDIYDAKNAVDHLSGFNVCGRYLVVLYYQQTKMQKRLDTEKE 104
                 5677777.579*******************9933345789********************************9999999887666555 PP

>> TIGR01659  sex-lethal: sex-lethal family splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.4   0.1   4.6e-10   2.7e-07     195     256 ..      18      76 ..      14      96 .. 0.90

  Alignments for each domain:
  == domain 1    score: 28.4 bits;  conditional E-value: 4.6e-10
   TIGR01659 195 nlyvtnlprtitddqldtifgkygsivqknilrdkltgkprgvafvrfnkreeaqeaisaln 256
                  lyv nlp  it +++  ifgk+g i q   +r   +   rg afv ++   +a++a+  l 
  MMETSP1137-20121227|3592_1  18 ALYVRNLPFKITTEEMYDIFGKFGAIRQ---IRLGNASDTRGTAFVVYEDIYDAKNAVDHLS 76 
                 69************************99...566778889****************998775 PP

>> TIGR01661  ELAV_HUD_SF: ELAV/HuD family splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.9   0.0   5.1e-09     3e-06     271     346 ..      18      91 ..       3      97 .. 0.78

  Alignments for each domain:
  == domain 1    score: 24.9 bits;  conditional E-value: 5.1e-09
   TIGR01661 271 cifvynlspd.tdeavlqlfgpfGavqsvkiirdlttnkckGygfvsmtnydeaalailslnGytlgnrvlqvsfkt 346
                  ++v nl  + t e +  +fg+fGa++++++    ++   +G +fv   +  +a +a+  l G+++++r l v +  
  MMETSP1137-20121227|3592_1  18 ALYVRNLPFKiTTEEMYDIFGKFGAIRQIRLG---NASDTRGTAFVVYEDIYDAKNAVDHLSGFNVCGRYLVVLYYQ 91 
                 67888887543778888999999999887664...556789999999999999999999999999999999887655 PP

>> TIGR01648  hnRNP-R-Q: hnRNP-R, Q splicing factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.0   0.0   2.2e-08   1.3e-05      55     131 ..      13      86 ..      10     109 .. 0.68

  Alignments for each domain:
  == domain 1    score: 22.0 bits;  conditional E-value: 2.2e-08
   TIGR01648  55 PerGcevfvGkiPrdlyedelvPlfekvGkiyelrlmmdldGknrGyafvtfcnkeeakeavkelnnyeirpGrllG 131
                 Pe    ++v  +P  +  +e+  +f k G i ++rl      + rG afv++ +  +ak+av +l  +++  Gr+l 
  MMETSP1137-20121227|3592_1  13 PEVNRALYVRNLPFKITTEEMYDIFGKFGAIRQIRLGN--ASDTRGTAFVVYEDIYDAKNAVDHLSGFNV-CGRYLV 86 
                 55566667777777777777777777777777777643..445677777777777777777777776665.355554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (125 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       164  (0.0399805); expected 82.0 (0.02)
Passed bias filter:                      141  (0.0343735); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.19u 0.13s 00:00:00.32 Elapsed: 00:00:00.32
# Mc/sec: 515.58
//
Query:       MMETSP1137-20121227|3594_1  [L=459]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.2e-11   41.9   0.1    8.4e-07   26.0   0.0    2.2  2  TIGR01988 Ubi-OHases: ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family
    5.3e-10   36.5   0.0    3.5e-06   23.9   0.0    2.2  2  TIGR01984 UbiH: 2-polyprenyl-6-methoxyphenol 4-hydroxylase
    1.9e-07   28.9   0.0     0.0079   13.7   0.0    2.4  2  TIGR02032 GG-red-SF: geranylgeranyl reductase family
    1.2e-06   25.3   0.0    2.4e-06   24.3   0.0    1.4  1  TIGR03219 salicylate_mono: salicylate 1-monooxygenase
    1.3e-06   25.5   0.0    2.3e-05   21.3   0.0    2.1  2  TIGR01989 COQ6: ubiquinone biosynthesis monooxygenase COQ6
    7.8e-05   19.5   0.0    0.00014   18.7   0.0    1.3  1  TIGR02360 pbenz_hydroxyl: 4-hydroxybenzoate 3-monooxygenase


Domain annotation for each model (and alignments):
>> TIGR01988  Ubi-OHases: ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.0   6.3e-06    0.0043      39     171 ..      54     189 ..      28     201 .. 0.72
   2 !   26.0   0.0   1.2e-09   8.4e-07     277     318 ..     307     348 ..     298     377 .. 0.82

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 6.3e-06
   TIGR01988  39 spafdnRvsAlsaasiellekigvwdklekkraqpiqkirvsdagskgalefdaaevgaeaLgyvvenkvlqqaLlealqekknkvtllapaeveeleresdaveltlsdget.......leakLlvgADGanSkvrqaa 171
                 + +  +  +Als++  + l   g+ ++  +  a p++   + d++++    ++    ++e++ y ++ + +++ Ll +l++ ++  +++   +++++ ++ +a   + +dg          e+  l g+DGa S+vr ++
  MMETSP1137-20121227|3594_1  54 DASKRSINLALSHRGLRALACAGLSERAIE-MAVPMRGRMIHDKKGNM--ALQPYGTKEEEVLYSISRTAINAWLLDELEKCDK-ARVHYGYSCTRVWSDGTAEFTRQDDGGFlkpdkikTESTKLLGCDGAFSAVRAQL 189
                 334445568999***********9999888.899****99***99655..555666688***********************95.777777777777766555444444444444444444555567**********764 PP

  == domain 2    score: 26.0 bits;  conditional E-value: 1.2e-09
   TIGR01988 277 aervaliGdAAhtvhPlAGQGlNlGlrDvaaLaevlaeaver 318
                   ++ l+GdAAh v P  GQG+N  l+D   L e+l  a ++
  MMETSP1137-20121227|3594_1 307 GGHILLLGDAAHGVVPFYGQGMNCALEDCLLLNEALDSANNE 348
                 56899*******************************998765 PP

>> TIGR01984  UbiH: 2-polyprenyl-6-methoxyphenol 4-hydroxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.4   0.0   6.6e-05     0.045      41     168 ..      57     189 ..      30     203 .. 0.83
   2 !   23.9   0.0   5.1e-09   3.5e-06     272     316 ..     304     348 ..     296     372 .. 0.83

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 6.6e-05
   TIGR01984  41 fdarslalsagskqileklgiweklekeatpikdihvsdrgafgalelraeevalpaLGyVveladlkqallkrlaekkkiklyapaelkeierekdeaevkldneq.......kleakLlvaAdGanskvresl 168
                 +   +lals+    +l+  g+ e+  ++a p++   + d+   g + l+    +++   y ++ + +++ ll++l+++ k +++  ++++++ ++   +  + d++        k e+  l  +dGa s+vr +l
  MMETSP1137-20121227|3594_1  57 KRSINLALSHRGLRALACAGLSERAIEMAVPMRGRMIHDK--KGNMALQPYGTKEEEVLYSISRTAINAWLLDELEKCDKARVHYGYSCTRVWSDGTAEFTRQDDGGflkpdkiKTESTKLLGCDGAFSAVRAQL 189
                 3344689********************************9..68888888888999999*********************************999988777777777777775566677899*********9775 PP

  == domain 2    score: 23.9 bits;  conditional E-value: 5.1e-09
   TIGR01984 272 eqvkervvlignaAqtlhPiAgQGfNlGlrDvltLaevledarkd 316
                  ++  +++l+g+aA+ + P  gQG+N  l D l L e+l +a+++
  MMETSP1137-20121227|3594_1 304 WNIGGHILLLGDAAHGVVPFYGQGMNCALEDCLLLNEALDSANNE 348
                 567789*********************************998643 PP

>> TIGR02032  GG-red-SF: geranylgeranyl reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.5   0.0   2.8e-05     0.019      13     156 ..      47     190 ..      44     213 .. 0.83
   2 !   13.7   0.0   1.2e-05    0.0079     249     287 ..     294     332 ..     263     336 .. 0.87

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 2.8e-05
   TIGR02032  13 ssaAlrlakkGlrVlllekkelprekeCggalskraveelelpkelivnevrkariispngekveieeeeeealvidRkefDelLaekAqe.agaelllettvlsveiedekvkvevred.....ekkevtakivigAdGakskvakklg 156
                 +s+A+ +  + +++ l   ++  r+++C+g ls+ra+e ++ +   ++ ++++   + p g      +eee  + i+R++    L+++ ++   a+++++   ++v+ +++++ ++ +++     +k++ ++  + g dGa s+v+ +l 
  MMETSP1137-20121227|3594_1  47 ASLARVADASKRSINLALSHRGLRALACAG-LSERAIEMAVPMRGRMIHDKKGNMALQPYG-----TKEEEVLYSISRTAINAWLLDELEKcDKARVHYGYSCTRVWSDGTAEFTRQDDGgflkpDKIKTESTKLLGCDGAFSAVRAQLA 190
                 67777777777778787888999******8.799999999999999**************9.....4445899**************999834689***********9996666666665788889999****************99987 PP

  == domain 2    score: 13.7 bits;  conditional E-value: 1.2e-05
   TIGR02032 249 aliPirradektvtgnvllvGDAAglVkPltGeGIayam 287
                 a++ + r + +   g +ll+GDAA  V P+ G G++ a+
  MMETSP1137-20121227|3594_1 294 AALSTVRCAPWNIGGHILLLGDAAHGVVPFYGQGMNCAL 332
                 5566666777888999********************997 PP

>> TIGR03219  salicylate_mono: salicylate 1-monooxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.3   0.0   3.5e-09   2.4e-06     289     404 ..     297     410 ..     281     416 .. 0.74

  Alignments for each domain:
  == domain 1    score: 24.3 bits;  conditional E-value: 3.5e-09
   TIGR03219 289 hdlaelpgyvhGrvaliGdaahamlphqGaGaGqGledayllarlledtkleaedlpellevyddvrrerackvqrtsveaGelyelrdpaveadeeklgellaerfdwlwnhdld 404
                   +   p  + G + l+Gdaah ++p  G G    led +ll++ l+ ++ e e  ++l + y   +    c  q +  +  e+ +   + v   ++k+  ll++ f   w+  l+
  MMETSP1137-20121227|3594_1 297 STVRCAPWNIGGHILLLGDAAHGVVPFYGQGMNCALEDCLLLNEALDSANNEWE--TALPAFYASRKPATDCLAQLAIDNYXEMRDKTVSRVFLLKNKIHGLLHTAFGDKWQPSLH 410
                 555566777889**********************************99877655..345555555444456777776666555555555555556677777777777777776665 PP

>> TIGR01989  COQ6: ubiquinone biosynthesis monooxygenase COQ6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.0     0.027        18     165     199 ..     166     200 ..      82     205 .. 0.62
   2 !   21.3   0.0   3.4e-08   2.3e-05     335     371 ..     310     346 ..     303     385 .. 0.93

  Alignments for each domain:
  == domain 1    score: 1.9 bits;  conditional E-value: 0.027
   TIGR01989 165 edgetlktklliGADGanSkvR.kaanikvtgwnYn 199
                 ++ +t +tk l+G DGa S vR + a i+  + n++
  MMETSP1137-20121227|3594_1 166 DKIKTESTK-LLGCDGAFSAVRaQLARISRLSINFE 200
                 334444555.56**********55688998888875 PP

  == domain 2    score: 21.3 bits;  conditional E-value: 3.4e-08
   TIGR01989 335 vALvGDAAHrvHPLAGqGvNlGfsDvesLvkalaeav 371
                 + L+GDAAH v P  GqG+N  ++D   L +al++a 
  MMETSP1137-20121227|3594_1 310 ILLLGDAAHGVVPFYGQGMNCALEDCLLLNEALDSAN 346
                 679******************************9886 PP

>> TIGR02360  pbenz_hydroxyl: 4-hydroxybenzoate 3-monooxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.0     2e-07   0.00014     266     323 ..     294     352 ..     284     364 .. 0.82

  Alignments for each domain:
  == domain 1    score: 18.7 bits;  conditional E-value: 2e-07
   TIGR02360 266 aplrsfvaepmry.GrlflaGdaahivpptGakGlnlaasdvaylyealleaykekdsa 323
                 a l +  + p +  G+++l Gdaah v p   +G+n a  d  +l eal  a +e ++a
  MMETSP1137-20121227|3594_1 294 AALSTVRCAPWNIgGHILLLGDAAHGVVPFYGQGMNCALEDCLLLNEALDSANNEWETA 352
                 566677778877636899*******************************9988776655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (459 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       103  (0.0251097); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.34u 0.18s 00:00:00.52 Elapsed: 00:00:00.45
# Mc/sec: 1346.29
//
Query:       MMETSP1137-20121227|3595_1  [L=418]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (418 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        96  (0.0234032); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.17s 00:00:00.48 Elapsed: 00:00:00.34
# Mc/sec: 1622.69
//
Query:       MMETSP1137-20121227|3596_1  [L=306]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (306 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        76  (0.0185275); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.14s 00:00:00.39 Elapsed: 00:00:00.28
# Mc/sec: 1442.45
//
Query:       MMETSP1137-20121227|3597_1  [L=113]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (113 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        59  (0.0143832); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.31
# Mc/sec: 481.12
//
Query:       MMETSP1137-20121227|3600_1  [L=529]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   2.9e-208  690.6   0.9   7.4e-208  689.3   0.6    1.5  1  TIGR01117 mmdA: methylmalonyl-CoA decarboxylase alpha subunit
    1.8e-21   74.6   2.2      4e-16   57.0   0.8    3.3  3  TIGR00515 accD: acetyl-CoA carboxylase, carboxyl transferase, beta subunit
    4.2e-20   70.0   4.4    3.2e-18   63.8   2.8    2.8  2  TIGR03133 malonate_beta: malonate decarboxylase, beta subunit
    1.3e-13   48.8   2.1    2.1e-08   31.7   0.0    2.5  2  TIGR00513 accA: acetyl-CoA carboxylase, carboxyl transferase, alpha subunit
      2e-08   31.9   0.0    9.2e-08   29.7   0.0    2.0  2  TIGR03134 malonate_gamma: malonate decarboxylase, gamma subunit


Domain annotation for each model (and alignments):
>> TIGR01117  mmdA: methylmalonyl-CoA decarboxylase alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  689.3   0.6    9e-211  7.4e-208       5     512 .]      43     529 .]      38     529 .] 0.97

  Alignments for each domain:
  == domain 1    score: 689.3 bits;  conditional E-value: 9e-211
   TIGR01117   5 elhekkekikqgggekriekqhekgkltarerlellldegsfveldafvkkratefgldkkelpaegvvtgygtvdgrlvyvfaqdftveggslgemhaakivkildlalklgapvvglndsggariqeavdalkgygdifyrntiasgvvpqisvilgpcaggavyspaltdfilmvdntsqmfitgpqviktvtgeevtaedlggamahasksgvahliaeddedvialirkllsylps.nnmedapevkteddpvrktpelddllpddpnkaydvkdvitaivdngeylelqpyyaknivvgfaridgksvgivanqpkvlagvldidssdkiarfvrfcdafnipivtfvdvpgylpgvdqeyggiirhgakvlyayseatvpkvtiilrkayggaylamgskdlgadvvyayptaeiavmgpegaaniifrkeikeakdpealrkekieeyrekfanpykaaargyvddviepketrakvvsaleileskreklppkkhgnipl 512
                  l e  +  k ggg kri kqh+kgkltarerlellldegsf e d++                 +gvvtg+g vdgr vyvf+qdftv ggsl e ha ki+ki+d a+ +gapv+glndsggariqe+v +l+gy ++f+rn  asgvvpq+svi+gpcaggavyspa+tdf +mv+n+s+mf+tgp+v+ktvt eevt+e lgga +h+++sgvahl a +d ++++++r l+s lp+  n e +p+ +ted  +r ++ l++++p+dpn +yd+ d++ +++d+ +++e+   +a ni++gf+r++g++vgivanqpk lag+ldid+s k+arfvrfcd fnipi+tfvdvpg+lpg  qe+ggiirhg+k+l+ay+eatvpkvt+i+rkayggay  m+sk+l  d+ ya+p+ae+avmg +ga++iifr + + a        e ++ y +kfanp  a++rg+vd  i pk+tr+++ + le+l +k++  p kkh nipl
  MMETSP1137-20121227|3600_1  43 RLAEAEAIAKLGGGPKRIAKQHAKGKLTARERLELLLDEGSFREYDQLK-------------TQXDGVVTGHGLVDGRRVYVFSQDFTVFGGSLSETHAEKICKIMDQAVLVGAPVIGLNDSGGARIQEGVASLAGYAEVFQRNVDASGVVPQLSVIMGPCAGGAVYSPAMTDFTMMVENSSYMFVTGPEVVKTVTNEEVTSEVLGGARTHTRTSGVAHLSALNDLEALMKMRSLVSKLPAmSNREPPPTRHTEDPRNRADEALETMVPQDPNVPYDMGDLVRRVLDDRHLFEVSSAFAANILTGFGRMEGRTVGIVANQPKELAGCLDIDASVKAARFVRFCDCFNIPILTFVDVPGFLPGRAQEHGGIIRHGSKLLFAYAEATVPKVTVITRKAYGGAYDVMSSKHLRGDINYAWPSAEVAVMGAKGAVEIIFRGH-NIA--------EETAAYEHKFANPLAASQRGFVDACISPKTTRQRICEDLELLRNKKVTGPLKKHSNIPL 529
                 5666666678899******************************998863.............3479******************************************************************************************************************************************************************************73789999999*****************************************************************************************************************************************************************************************88.223........34689*****************************************************8 PP

>> TIGR00515  accD: acetyl-CoA carboxylase, carboxyl transferase, beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.5   0.0    0.0012      0.95      56      77 ..      68      89 ..      60      94 .. 0.86
   2 !   57.0   0.8   4.9e-19     4e-16     106     242 ..      93     228 ..      88     234 .. 0.89
   3 !    8.6   0.0   0.00027      0.22     110     233 ..     331     457 ..     290     517 .. 0.65

  Alignments for each domain:
  == domain 1    score: 6.5 bits;  conditional E-value: 0.0012
   TIGR00515 56 rvdakerieslldeksfeelne 77
                +++a+er+e llde+sf+e ++
  MMETSP1137-20121227|3600_1 68 KLTARERLELLLDEGSFREYDQ 89
                789****************986 PP

  == domain 2    score: 57.0 bits;  conditional E-value: 4.9e-19
   TIGR00515 106 ekdavvtgkgkldglPivvavldfsfmgGslGsvvGeklvraiekavaervplvivsasGGarmqeallslmqmaktsaalkklrekkllfisvltdPtlGGvsasfamlGdlilaePkaliGfaGrrvieqtvrek 242
                 + d vvtg+g +dg  + v   df+  gGsl     ek+++++++av    p++ +  sGGar+qe++ sl   a +           ++ +sv+  P  GG   s am    ++ e  + +  +G+ v++   +e+
  MMETSP1137-20121227|3600_1  93 QXDGVVTGHGLVDGRRVYVFSQDFTVFGGSLSETHAEKICKIMDQAVLVGAPVIGLNDSGGARIQEGVASLAGYAEVFQRNVD-ASGVVPQLSVIMGPCAGGAVYSPAMTDFTMMVENSSYMFVTGPEVVKTVTNEE 228
                 5799*******************************************************************999887543322.3345899******************9999999*************99877766 PP

  == domain 3    score: 8.6 bits;  conditional E-value: 0.00027
   TIGR00515 110 vvtgkgkldglPivvavldfsfmgGsl...GsvvGeklvraiekavaervplvivsasGGarmqeallslmqmaktsaalkklrekkllfisvltdPtlGG...vsasfamlGdlilaePkaliGfaGrr 233
                 ++tg g+++g  + +++ + +  +G l    sv  +++vr  +      +++v v      r qe       +   s  l  + e+ ++ ++v+t  ++GG   v +s  + Gd++ a P a +   G +
  MMETSP1137-20121227|3600_1 331 ILTGFGRMEGRTVGIVANQPKELAGCLdidASVKAARFVRFCDCFNIPILTFVDVPGFLPGRAQEHGGI---IRHGSKLLFAYAEATVPKVTVITRKAYGGaydVMSSKHLRGDINYAWPSAEVAVMGAK 457
                 556666666666666666666666666333355555555555544444444444433334566665433...334577788999****************977778899999*********988777754 PP

>> TIGR03133  malonate_beta: malonate decarboxylase, beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.8   2.8   3.9e-21   3.2e-18       6     183 ..      69     225 ..      67     232 .. 0.88
   2 ?   -1.3   0.0      0.28   2.3e+02      40      70 ..     322     352 ..     318     358 .. 0.79

  Alignments for each domain:
  == domain 1    score: 63.8 bits;  conditional E-value: 3.9e-21
   TIGR03133   6 anAreRikallDegsfkellgpfdrvtsPhLallgiveqfDDGvvvgkgkldgkpvvviaqegkFiGGsvGEvhGaKivgllelaiednkkekktavvllletGGVRLqEANaGllaiaeimraildlraavpvigliggkvGafGGmgivaalcsaliv.seegRlglsGpeVieqea 183
                 ++AreR++ llDegsf+e+                  +   DGvv+g+g +dg+ v+v +q+ +  GGs+ E h  Ki +++++a+        + v+ l ++GG R+qE  a l+  ae+ +  +d+   vp +++i g   + GG     a+++  ++  +++ + ++GpeV+++++
  MMETSP1137-20121227|3600_1  69 LTARERLELLLDEGSFREYD---------------QLKTQXDGVVTGHGLVDGRRVYVFSQDFTVFGGSLSETHAEKICKIMDQAV-----LVGAPVIGLNDSGGARIQEGVASLAGYAEVFQRNVDASGVVPQLSVIMGP--CAGGAVYSPAMTDFTMMvENSSYMFVTGPEVVKTVT 225
                 57999999999999999863...............3344579*******************************************9.....5667799999**************************************97..7899999999988765515667899*******9875 PP

  == domain 2    score: -1.3 bits;  conditional E-value: 0.28
   TIGR03133  40 giveqfDDGvvvgkgkldgkpvvviaqegkF 70 
                 ++ ++f   +++g g+++g++v ++a + k 
  MMETSP1137-20121227|3600_1 322 EVSSAFAANILTGFGRMEGRTVGIVANQPKE 352
                 667778888999**********999987654 PP

>> TIGR00513  accA: acetyl-CoA carboxylase, carboxyl transferase, alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.3   1.6e-06    0.0013     139     231 ..     130     222 ..     117     234 .. 0.85
   2 !   31.7   0.0   2.6e-11   2.1e-08      98     215 ..     331     439 ..     294     499 .. 0.70

  Alignments for each domain:
  == domain 1    score: 16.0 bits;  conditional E-value: 1.6e-06
   TIGR00513 139 kalrlmklaekfklPiitfidtkGaypGig.aeerGqseaiaknlremarlkvPvicvviGeGGsGGalaigvgdkvamleysvys.visPegca 231
                 k  ++m++a   + P+i + d+ Ga    g a   G +e   +n+   a+  vP ++v++G    G   + +++d   m+e+s y  v  Pe + 
  MMETSP1137-20121227|3600_1 130 KICKIMDQAVLVGAPVIGLNDSGGARIQEGvASLAGYAEVFQRNVD--ASGVVPQLSVIMGPCAGGAVYSPAMTDFTMMVENSSYMfVTGPEVVK 222
                 7789*********************8765526678*********97..6778*********9998888999**************8345588665 PP

  == domain 2    score: 31.7 bits;  conditional E-value: 2.6e-11
   TIGR00513  98 ivggvakldgrPvvviGhqkGrdtkeklarnfGmpaPeGyrkalrlmklaekfklPiitfidtkGaypGigaeerGqseaiaknlremarlkvPvicvviGeGGsGGalaigvgdkva 215
                 i++g ++++gr v ++ +q     k +la   G  + +   ka r++++ + f++Pi+tf+d +G  pG++ e+ G     +k l+ +a+ +vP ++ vi     GGa  +  + +++
  MMETSP1137-20121227|3600_1 331 ILTGFGRMEGRTVGIVANQP----K-ELA---GCLDIDASVKAARFVRFCDCFNIPILTFVDVPGFLPGRAQEHGGIIRHGSKLLFAYAEATVPKVT-VITRKAYGGAYDVMSSKHLR 439
                 55566666666666655542....1.222...3444445579****************************************************985.67788999999998888775 PP

>> TIGR03134  malonate_gamma: malonate decarboxylase, gamma subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0       0.3   2.5e+02      20      39 ..      94     113 ..      71     197 .. 0.68
   2 !   29.7   0.0   1.1e-10   9.2e-08      20     223 ..     328     516 ..     306     524 .. 0.85

  Alignments for each domain:
  == domain 1    score: -1.2 bits;  conditional E-value: 0.3
   TIGR03134  20 gpsvvvgsaelagekvtvig 39 
                  ++vv+g++ ++g++v v++
  MMETSP1137-20121227|3600_1  94 XDGVVTGHGLVDGRRVYVFS 113
                 55777777777777766654 PP

  == domain 2    score: 29.7 bits;  conditional E-value: 1.1e-10
   TIGR03134  20 gpsvvvgsaelagekvtvigvvedannkfprvragevgleeglalAqavlavieedkdkekrpivlivDtpsqalgrreEllGlnealAalakalaearlaghpvialvvgkaisGaF...LahGlqadrilaLddpgaevhvMdlesvaRvtkrsveeLeelaksvpvfApgvenfaklGaveelleeadadapaeaqlaevraal 223
                  +++++g + ++g++v +++  ++         ag ++++ +++ A+ v+     +      pi++ vD+p+  +gr +E  G+ +  ++l  a+aea     p +++++ ka +Ga+    +  l  d  +a   p+aev+vM+ +++  ++ r ++  ee a+    fA  +    + G+v++ ++ ++  +   ++l+ +r+++
  MMETSP1137-20121227|3600_1 328 AANILTGFGRMEGRTVGIVANQPKE-------LAGCLDIDASVKAARFVRFCDCFN-----IPILTFVDVPGFLPGRAQEHGGIIRHGSKLLFAYAEAT---VPKVTVITRKAYGGAYdvmSSKHLRGDINYAW--PSAEVAVMGAKGAVEIIFRGHNIAEETAAYEHKFANPLAA-SQRGFVDACISPKTTRQRICEDLELLRNKK 516
                 4467888888888888888877777.......99**************99765555.....9**********************************997...599************954234568899999**..***********************************88766.566999999999998887788888877765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (529 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       140  (0.0341297); expected 82.0 (0.02)
Passed bias filter:                      117  (0.0285227); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.48u 0.19s 00:00:00.67 Elapsed: 00:00:00.66
# Mc/sec: 1057.91
//
Query:       MMETSP1137-20121227|3602_1  [L=235]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.051   10.5   1.6      0.081    9.8   1.1    1.2  1  TIGR01582 FDH-beta: formate dehydrogenase, beta subunit


Domain annotation for each model (and alignments):
>> TIGR01582  FDH-beta: formate dehydrogenase, beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   1.1     2e-05     0.081      91     108 ..     190     209 ..     178     217 .. 0.74

  Alignments for each domain:
  == domain 1    score: 9.8 bits;  conditional E-value: 2e-05
   TIGR01582  91 dgcmhcaepgclk.ac.pap 108
                 + cmhc epgc   ac p p
  MMETSP1137-20121227|3602_1 190 KLCMHCLEPGCAAlACqPVP 209
                 56*********642664444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (235 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        95  (0.0231594); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.22u 0.17s 00:00:00.39 Elapsed: 00:00:00.44
# Mc/sec: 704.94
//
Query:       MMETSP1137-20121227|3603_1  [L=458]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      2e-59  199.4   0.0    1.1e-58  196.9   0.0    1.9  1  TIGR03356 BGL: beta-galactosidase
    4.4e-29   99.5   0.1    2.9e-28   96.8   0.1    2.0  1  TIGR01233 lacG: 6-phospho-beta-galactosidase


Domain annotation for each model (and alignments):
>> TIGR03356  BGL: beta-galactosidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  196.9   0.0   5.6e-62   1.1e-58     153     425 ..       2     307 ..       1     309 [. 0.81

  Alignments for each domain:
  == domain 1    score: 196.9 bits;  conditional E-value: 5.6e-62
   TIGR03356 153 vkkwitlnEplvvallgyllGvhapglkdlke...........alkaahhlllahglavkalrea...aaeakvgivlnlepvepasdseedvaaaeladallnrlfldpllkgeypeellekl.eklpkveegdletiaqplDflginyYtrevvkadeeeeleea........eveekvektemg.........We.vapegltdlllrlkeeykklpiyitEnGaaledeveegeveDeeRiaylkehleavkrai.eeGvdvkgyfvWsllDnfEWaeGyskRFGlvyvdyetqkRtlKesak 425
                 v++w+t+nEp++++++gy  G+hapg    ++            + ++ ++l +h+ av+++r++   +++ ++gi+ln+e ++p ++s++d+aaa +a +++  ++l p+++g+yp+ + +++ e+lp+++e + + +   +D+lgin+Y+ ++v++++++el  +        ++++++  t++g         W+  +p g++ ll +++e+y+  pi++tEnG +++  + e    D+e ++y+ ++ e+v+ a+ e+Gv+vkgyf Wsl+DnfEWa GyskRFGl yvdyetq Rt+K++a 
  MMETSP1137-20121227|3603_1   2 VTTWFTFNEPWTFTTAGYSAGIHAPGCVPFQQgggpcatgattPYVVSTNVLNSHARAVHVYRTQfqpKQRGTIGITLNCEFAMPLTESADDKAAALRALDFWLGWWLLPIVRGDYPSTMRANAgERLPTFSEAQRTLLLDSIDVLGINHYSTHLVRQASKDELVPVttdapvdgWEKDQHVVTSFGaswpsaaspWQkSYPPGIRGLLNWVHERYSG-PILVTENGWSCNSMTVEEAQADQEQVDYYAQYTEQVRLAMaEDGVPVKGYFGWSLMDNFEWADGYSKRFGLFYVDYETQVRTPKKAAX 307
                 899**********************976544311111111100456788999***********87322456789********************************************998766267999**************************999988765541111111123344444443333111122264368***************96.9***********99999999****************9876268*****************************************9875 PP

>> TIGR01233  lacG: 6-phospho-beta-galactosidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.8   0.1   1.4e-31   2.9e-28     151     460 ..       2     307 ..       1     312 [. 0.74

  Alignments for each domain:
  == domain 1    score: 96.8 bits;  conditional E-value: 1.4e-31
   TIGR01233 151 vkywitineitsiavqqylvgkfppai..........kydldkvfqaehnqmvaharivklykdk...qlkgeigvvhalqtkypydesavdvraaeledilenklildatllgeysdktlelvkeildenhqgeldlrdeelkaldeakdlldflgvnyylsdwlraydgkseiihngdgekgsskarlkgvg.eeklpdyvertdwdwiiypeglydilmrvkndyplvkkiyvtenglglkeelvenatpdtvveddkridyvkkylevladaia.dganvkgyfiwslqdvfswsngyekryglfyvdfdtqeryikksae 460
                 v  w t+ne+ +++   y +g   p+                  +    n + +har+v++y+ +   + +g ig+    +   p  esa d+ aa     +    +l   + g+y             +n +  l +  e  ++l    d  d lg+n+y ++ +r    k e++            + + v     +      + w+   yp g+   l  v++ y     i vteng   +   ve+     +  d++++dy  +y e +  a+a dg  vkgyf wsl+d f w++gy+kr+glfyvd++tq r +kk+a 
  MMETSP1137-20121227|3603_1   2 VTTWFTFNEPWTFTTAGYSAGIHAPGCvpfqqgggpcATGATTPYVVSTNVLNSHARAVHVYRTQfqpKQRGTIGITLNCEFAMPLTESADDKAAALRALDFWLGWWLLPIVRGDYPSTM--------RANAGERLPTFSEAQRTL--LLDSIDVLGINHYSTHLVRQ-ASKDELVPVTTDAPVDGWEKDQHVVtSFGASWPSAASPWQK-SYPPGIRGLLNWVHERYSG--PILVTENGWSCNSMTVEE-----AQADQEQVDYYAQYTEQVRLAMAeDGVPVKGYFGWSLMDNFEWADGYSKRFGLFYVDYETQVRTPKKAAX 307
                 67899*****999999999999888752221111111122344577889*************9763335789*****9999999*99998766555433334455677788899997643........345455555555555554..35789********8888775.45566665544444333344444430333433444556665.5***************975..699*******99999999.....567999**********999887549******************************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (458 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        69  (0.0168211); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.12s 00:00:00.50 Elapsed: 00:00:00.55
# Mc/sec: 1099.11
//
Query:       MMETSP1137-20121227|3604_1  [L=207]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.3e-11   39.0   0.9    8.3e-11   39.0   0.6    1.8  2  TIGR00990 3a0801s09: mitochondrial precursor proteins import receptor
    1.9e-06   23.9   2.0    2.7e-06   23.3   1.4    1.2  1  TIGR02917 PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein
    3.7e-05   21.3   2.3    5.3e-05   20.8   1.3    1.5  1  TIGR02552 LcrH_SycD: type III secretion low calcium response chaperone LcrH/SycD
  ------ inclusion threshold ------
      0.024   12.0   3.9      0.042   11.2   1.1    2.0  2  TIGR02521 type_IV_pilW: type IV pilus biogenesis/stability protein PilW


Domain annotation for each model (and alignments):
>> TIGR00990  3a0801s09: mitochondrial precursor proteins import receptor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.0   0.6   8.1e-14   8.3e-11     131     209 ..       9      88 ..       5     112 .. 0.89
   2 ?   -3.4   2.2      0.58   5.9e+02      78     109 ..     134     166 ..     117     199 .. 0.55

  Alignments for each domain:
  == domain 1    score: 39.0 bits;  conditional E-value: 8.1e-14
   TIGR00990 131 kekGnkayrnkdfdkaielyskalllke.dPvyysnraacynaladlekvvedttaaleldpdyvkalnrranaydqlgk 209
                 k +Gn  ++  d+ ka   y+ka+   + + v ysnra  +  l ++ k ++d+ + +eldp +vk   r+a+a    g 
  MMETSP1137-20121227|3604_1   9 KAAGNAHFKAGDYLKAAAAYTKAIKAAPeNHVLYSNRAQAFLKLNKVSKALDDADKCIELDPTFVKGYHRKASALHACGE 88 
                 889*********************9876268*******************************************887665 PP

  == domain 2    score: -3.4 bits;  conditional E-value: 0.58
   TIGR00990  78 kdaekeaek.kaeekkstapkaaavesadelpe 109
                 k  ek+a+k + +e k+ a++ +a +  ++ +e
  MMETSP1137-20121227|3604_1 134 KSGEKDADKsNDAETKAGATSGPASKERSDGGE 166
                 334444444223344444444444443333333 PP

>> TIGR02917  PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.3   1.4   2.7e-09   2.7e-06     362     430 ..       4      72 ..       2      99 .. 0.86

  Alignments for each domain:
  == domain 1    score: 23.3 bits;  conditional E-value: 2.7e-09
   TIGR02917 362 dsallsllGeayLekgdfekAaeylakaseldPenaaaktklgiskLaqGdkseaiadLetAvkldpel 430
                 ds++ + +G a+ ++gd+ kAa+   ka + +Pen  ++ + ++ +L  +++s+a+ d  + ++ldp  
  MMETSP1137-20121227|3604_1   4 DSETHKAAGNAHFKAGDYLKAAAAYTKAIKAAPENHVLYSNRAQAFLKLNKVSKALDDADKCIELDPTF 72 
                 778888899999999999999999999999999999999999999999999999999999999998865 PP

>> TIGR02552  LcrH_SycD: type III secretion low calcium response chaperone LcrH/SycD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   1.3   5.2e-08   5.3e-05      55     117 ..       8      70 ..       2      86 .. 0.87

  Alignments for each domain:
  == domain 1    score: 20.8 bits;  conditional E-value: 5.2e-08
   TIGR02552  55 wlgLaaclqalkeyeeAiaaYalaaaldlddprpvyhaaecllalgekeeAlkaLklaieiae 117
                 + + + ++ ++++y +A+aaY+ a ++ +++++ +  +a+ +l+l++  +Al++ + +ie++ 
  MMETSP1137-20121227|3604_1   8 HKAAGNAHFKAGDYLKAAAAYTKAIKAAPENHVLYSNRAQAFLKLNKVSKALDDADKCIELDP 70 
                 5677889999*********************************************99999876 PP

>> TIGR02521  type_IV_pilW: type IV pilus biogenesis/stability protein PilW
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   1.1   4.1e-05     0.042      38      96 ..      12      70 ..       3      71 .. 0.87
   2 ?    7.5   0.1   0.00054      0.55      37      86 ..      45      94 ..      41      98 .. 0.90

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 4.1e-05
   TIGR02521 38 aleYleqgdlekAkenlekAleldpkdadanlalAlyyqqlgelekAeesfrkAltlkp 96
                + + +++gd+ kA ++  kA++++p++   ++ +A ++ +l + +kA +   k ++l+p
  MMETSP1137-20121227|3604_1 12 GNAHFKAGDYLKAAAAYTKAIKAAPENHVLYSNRAQAFLKLNKVSKALDDADKCIELDP 70
                667899************************************99999887777777665 PP

  == domain 2    score: 7.5 bits;  conditional E-value: 0.00054
   TIGR02521 37 LaleYleqgdlekAkenlekAleldpkdadanlalAlyyqqlgelekAee 86
                 a ++l+ +++ kA ++ +k +eldp   + ++  A ++   ge  k ee
  MMETSP1137-20121227|3604_1 45 RAQAFLKLNKVSKALDDADKCIELDPTFVKGYHRKASALHACGEAAKSEE 94
                688999********************************999999888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (207 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       149  (0.0363237); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.26u 0.13s 00:00:00.39 Elapsed: 00:00:00.54
# Mc/sec: 505.96
//
Query:       MMETSP1137-20121227|3606_1  [L=259]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (259 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        66  (0.0160897); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.16s 00:00:00.36 Elapsed: 00:00:00.36
# Mc/sec: 949.59
//
Query:       MMETSP1137-20121227|3607_1  [L=90]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (90 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        57  (0.0138957); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.14s 00:00:00.27 Elapsed: 00:00:00.28
# Mc/sec: 424.25
//
Query:       MMETSP1137-20121227|3608_1  [L=222]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (222 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       122  (0.0297416); expected 82.0 (0.02)
Passed bias filter:                      114  (0.0277913); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.19s 00:00:00.42 Elapsed: 00:00:00.40
# Mc/sec: 732.54
//
Query:       MMETSP1137-20121227|3609_1  [L=324]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (324 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        77  (0.0187713); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.15s 00:00:00.38 Elapsed: 00:00:00.39
# Mc/sec: 1096.52
//
Query:       MMETSP1137-20121227|3610_1  [L=110]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (110 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        24  (0.0058508); expected 82.0 (0.02)
Passed bias filter:                       24  (0.0058508); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.27
# Mc/sec: 537.73
//
Query:       MMETSP1137-20121227|3611_1  [L=176]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (176 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        62  (0.0151146); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.14s 00:00:00.33 Elapsed: 00:00:00.35
# Mc/sec: 663.72
//
Query:       MMETSP1137-20121227|3612_1  [L=93]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (93 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        19  (0.00463189); expected 82.0 (0.02)
Passed bias filter:                       19  (0.00463189); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.13s 00:00:00.26 Elapsed: 00:00:00.25
# Mc/sec: 491.00
//
Query:       MMETSP1137-20121227|3613_1  [L=606]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.038    9.9   0.0      0.055    9.3   0.0    1.3  1  TIGR02956 TMAO_torS: TMAO reductase sytem sensor TorS


Domain annotation for each model (and alignments):
>> TIGR02956  TMAO_torS: TMAO reductase sytem sensor TorS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   0.0   1.3e-05     0.055     777     829 ..     230     282 ..      12     313 .. 0.76

  Alignments for each domain:
  == domain 1    score: 9.3 bits;  conditional E-value: 1.3e-05
   TIGR02956 777 lkfiavsAhvfnedvekylaagFdgflaKPlsekqLvatlakilegkkseeea 829
                  k++  +A   + +v +++aag dg+l+K ls +   + l k l+++ ++ ++
  MMETSP1137-20121227|3613_1 230 AKIAIRAASTSTAEVLSFRAAGADGVLPKALSLEAFSSHLVKLLNNNHKDGSS 282
                 3444445677889*******************************655553333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (606 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        88  (0.0214529); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.16s 00:00:00.57 Elapsed: 00:00:00.55
# Mc/sec: 1454.28
//
Query:       MMETSP1137-20121227|3614_1  [L=299]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (299 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        76  (0.0185275); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.14s 00:00:00.38 Elapsed: 00:00:00.37
# Mc/sec: 1066.61
//
Query:       MMETSP1137-20121227|3615_1  [L=518]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.6e-40  137.1   0.0    2.3e-40  136.6   0.0    1.2  1  TIGR00737 nifR3_yhdG: putative TIM-barrel protein, nifR3 family
    3.5e-17   60.6   0.0      5e-17   60.1   0.0    1.1  1  TIGR00742 yjbN: tRNA dihydrouridine synthase A
     0.0012   15.8   0.0     0.0047   13.9   0.0    1.8  1  TIGR01037 pyrD_sub1_fam: dihydroorotate dehydrogenase family protein


Domain annotation for each model (and alignments):
>> TIGR00737  nifR3_yhdG: putative TIM-barrel protein, nifR3 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  136.6   0.0   1.7e-43   2.3e-40      11     226 ..      68     291 ..      62     355 .. 0.85

  Alignments for each domain:
  == domain 1    score: 136.6 bits;  conditional E-value: 1.7e-43
   TIGR00737  11 vlaPlagvtdlafRrlvkeyeaglvvsEmvssealveksektkklleiae...dekpisvQlagsdpdvmaeaAk.iaeelgadiiDlNmGCPvkkitkkgaGsallkepe..liekivkavveave.vPVTvKiRiGwdeehinveeaariaedaGaqavalHgRTr...aqlyeGeanwdiiarvkqavkiPVignGDitspedAkamLeetgadgvligRgal 226
                 v+aP+ g +dlafR+l+++ +a+l ++Em+ ++  ve+ +    l e +    + +p  vQ +g d   +a+aA   + + g d +DlN+GCP k+      Gs ll +++  ++ + v+a+++a   vPVT KiR+    +   +  +a+ +++aG + +a+HgR r   + + +G+a++  + ++k+a++iPV++nG +  ++  +++L +t+adgv+++ + l
  MMETSP1137-20121227|3615_1  68 VVAPMVGASDLAFRKLCRRHGATLAYTEMLCARRFVEDAAYRFSLFESQRcmlNDRPLIVQFCGNDASXLAAAAAlAVGQHGVDGVDLNLGCPQKRAKEALYGSYLLDTEHwpRVFSCVRAMAAAAApVPVTCKIRLLPTLQ--ETILFAKGLQAAGCALLAVHGRQRgsvSRRRSGPADLRAVGALKRALAIPVLSNGNVRRAACVRHALVRTQADGVMVAEALL 291
                 67***********************************9977766665544222889****************9996778899*************************998644677888888777666********865444..445689****************9933345679**********************************************9865 PP

>> TIGR00742  yjbN: tRNA dihydrouridine synthase A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.1   0.0   3.7e-20     5e-17       5     223 ..      69     287 ..      66     306 .. 0.78

  Alignments for each domain:
  == domain 1    score: 60.1 bits;  conditional E-value: 3.7e-20
   TIGR00742   5 vaPmlditdrhfryllrllskkvllytemvtakaiihgdkkkllkfsee.....ekPvalqlggsdpedlakcaklaee.fgydeinlnvGcPsdrvqngnfGaclmanad..lvadivkamkea.veiPvtvktriGideldsyeelvdfveivsdkGikefivharkawlkGlsPkenreiPplryervyqlkkdfpnllieinGGiksleeikkhl..sfvdsvmvG 223
                 vaPm+  +d  fr l r+    +l ytem+ a+  +    +++  f+ +     ++P+ +q+ g+d + la +a la   +g d ++ln+GcP +r +++ +G+ l+   +   v  +v+am  a   +Pvt k r+    l + +e + f + ++ +G+  + vh r+    G s    r   p +   v  lk+      +  nG +++   +++ l     d+vmv 
  MMETSP1137-20121227|3615_1  69 VAPMVGASDLAFRKLCRRHG-ATLAYTEMLCARRFVEDAAYRFSLFESQrcmlnDRPLIVQFCGNDASXLAAAAALAVGqHGVDGVDLNLGCPQKRAKEALYGSYLLDTEHwpRVFSCVRAMAAAaAPVPVTCKIRL----LPTLQETILFAKGLQAAGCALLAVHGRQR---G-S-VSRRRSGPADLRAVGALKRALAI-PVLSNGNVRRAACVRHALvrTQADGVMVA 287
                 9****************976.6899***********99999887776542233389*****************99987659*************************98765338********876156888888776....667788899*****************974...3.2.22344455667777777776543.33347777777777666632345677765 PP

>> TIGR01037  pyrD_sub1_fam: dihydroorotate dehydrogenase family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.0   3.4e-06    0.0047      90     187 ..     122     227 ..     108     294 .. 0.83

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 3.4e-06
   TIGR01037  90 dtkliasvyGeseeefaevaeklekadkyvdaleLnvsCPhvkgaGieiGq...dpelsaevvkavke....kvdkPvlak..LsPnvtdivelakaveeaGaDglt 187
                 d++li++  G++    a +a +l   ++ vd ++Ln+ CP+ ++  + +G    d e   +v + v++    +  +Pv+ k  L P +++ + +ak ++ aG+  l+
  MMETSP1137-20121227|3615_1 122 DRPLIVQFCGNDASXLAAAA-ALAVGQHGVDGVDLNLGCPQKRAKEALYGSyllDTEHWPRVFSCVRAmaaaAAPVPVTCKirLLPTLQETILFAKGLQAAGCALLA 227
                 45699999999999988765.55557888************99999988864446777666766665411114568888764478****************986655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (518 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        76  (0.0185275); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.38u 0.16s 00:00:00.54 Elapsed: 00:00:00.55
# Mc/sec: 1243.10
//
Query:       MMETSP1137-20121227|3616_1  [L=188]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (188 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        78  (0.0190151); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.14s 00:00:00.33 Elapsed: 00:00:00.33
# Mc/sec: 751.94
//
Query:       MMETSP1137-20121227|3617_1  [L=134]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (134 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        72  (0.0175524); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.19s 00:00:00.32 Elapsed: 00:00:00.31
# Mc/sec: 570.53
//
Query:       MMETSP1137-20121227|3618_1  [L=248]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.5e-40  134.8   0.0    5.9e-40  134.4   0.0    1.1  1  TIGR00114 lumazine-synth: 6,7-dimethyl-8-ribityllumazine synthase
     0.0027   15.5   0.0     0.0037   15.0   0.0    1.2  1  TIGR01506 ribC_arch: riboflavin synthase


Domain annotation for each model (and alignments):
>> TIGR00114  lumazine-synth: 6,7-dimethyl-8-ribityllumazine synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  134.4   0.0   2.9e-43   5.9e-40       2     136 ..      76     209 ..      75     211 .. 0.98

  Alignments for each domain:
  == domain 1    score: 134.4 bits;  conditional E-value: 2.9e-43
   TIGR00114   2 rvaivvarfNrvitdkllkgakdalkrlgaevdnievilvpGafelPlavkkllekeklDavialGavirGeTeHfeyvadeaakglaklaldtdvPvifGiltteteeqaieragtkagnkgveaavkalemlk 136
                 r++i+ ar+ ++i+d l++g k+ l   g+ +dni    vpG+felPla++ l+ ++++Da++++G++i+G+T Hfe++a+++++gl+++ l+t++Pv+fG+lt + e+qa +r+   + n+g +++ +a+em+ 
  MMETSP1137-20121227|3618_1  76 RIGIIKARWHEDICDDLVSGIKQSLXECGVPEDNIVESEVPGSFELPLAARYLALSGTVDAILPIGVLIKGDTLHFEVIAESVTSGLMNVGLQTGIPVVFGVLTVNDEKQAKDRSTGAN-NHGLQWGKAAVEMAL 209
                 9**************************************************************************************************************99998888.*************85 PP

>> TIGR01506  ribC_arch: riboflavin synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   1.8e-06    0.0037      29     120 ..     108     201 ..      93     229 .. 0.76

  Alignments for each domain:
  == domain 1    score: 15.0 bits;  conditional E-value: 1.8e-06
   TIGR01506  29 ikivrrtvpGikdlpvaakklleekGceivitlGlv..GreekdklsylaasvGlilvqlltnkhvi.dvtvhedeaedeeelkvvaenrareha 120
                  +iv   vpG  +lp aa+ l      + ++ +G+   G + +  + +  ++ Gl+ v l t+  v+  v+  +de+++++     a+n   +  
  MMETSP1137-20121227|3618_1 108 DNIVESEVPGSFELPLAARYLALSGTVDAILPIGVLikGDTLHFEVIAESVTSGLMNVGLQTGIPVVfGVLTVNDEKQAKDR-STGANNHGLQWG 201
                 5789999*************9998999*****997522777777888888889*********98654278778888776544.445555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (248 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       105  (0.0255973); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.11u 0.25s 00:00:00.36 Elapsed: 00:00:00.36
# Mc/sec: 909.26
//
Query:       MMETSP1137-20121227|3621_1  [L=290]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.3e-14   50.4   0.0    6.5e-14   49.8   0.0    1.2  1  TIGR03534 RF_mod_PrmC: protein-(glutamine-N5) methyltransferase, release factor-specific
    1.7e-13   48.5   0.1    2.7e-13   47.9   0.1    1.2  1  TIGR00406 prmA: ribosomal protein L11 methyltransferase
    1.1e-10   39.0   0.0      2e-10   38.2   0.0    1.3  1  TIGR01983 UbiG: 3-demethylubiquinone-9 3-O-methyltransferase
      2e-09   34.8   0.0    3.1e-09   34.1   0.0    1.2  1  TIGR00536 hemK_fam: methyltransferase, HemK family
    3.9e-09   34.1   0.0    6.2e-09   33.4   0.0    1.3  1  TIGR03533 L3_gln_methyl: protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific
      5e-09   33.7   0.0    7.1e-09   33.2   0.0    1.2  1  TIGR01177 TIGR01177: TIGR01177 family protein
    4.6e-07   27.3   0.2    8.1e-07   26.5   0.1    1.3  1  TIGR02021 BchM-ChlM: magnesium protoporphyrin O-methyltransferase
      5e-07   27.4   0.0    7.2e-07   26.9   0.0    1.3  1  TIGR00537 hemK_rel_arch: putative methylase
    2.7e-06   25.5   0.0    5.3e-06   24.6   0.0    1.4  1  TIGR02469 CbiT: precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit
    3.1e-06   24.8   0.0    4.6e-06   24.2   0.0    1.2  1  TIGR00095 TIGR00095: RNA methyltransferase, RsmD family
    0.00017   18.8   0.0    0.00028   18.1   0.0    1.3  1  TIGR01934 MenG_MenH_UbiE: ubiquinone/menaquinone biosynthesis methyltransferase
    0.00076   16.1   0.0    0.00089   15.9   0.0    1.2  1  TIGR02987 met_A_Alw26: type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family
      0.002   15.4   0.4     0.0031   14.8   0.3    1.2  1  TIGR03704 PrmC_rel_meth: putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific
  ------ inclusion threshold ------
      0.013   13.1   0.0      0.021   12.4   0.0    1.3  1  TIGR02072 BioC: biotin biosynthesis protein BioC
      0.021   11.1   0.0      0.027   10.8   0.0    1.1  1  TIGR04074 bacter_Hen1: 3' terminal RNA ribose 2'-O-methyltransferase Hen1


Domain annotation for each model (and alignments):
>> TIGR03534  RF_mod_PrmC: protein-(glutamine-N5) methyltransferase, release factor-specific
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.8   0.0   2.4e-16   6.5e-14      88     171 ..      47     131 ..      32     173 .. 0.85

  Alignments for each domain:
  == domain 1    score: 49.8 bits;  conditional E-value: 2.4e-16
   TIGR03534  88 eklkvlDlgtGsGaIalalakelpdakviavDiseeAlkvarkNakrlglkeveflksdlleal...eekgkfdlivsNPPYipeae 171
                 e ++v+Dlg+G G++++  a  l  ++v++ D+++eAl+va++N ++ ++  +++++ d+++       +++fd +v NPP+  + +
  MMETSP1137-20121227|3621_1  47 EGMHVADLGCGGGVLGIGAAL-LGAVQVVGYDVDAEALEVASENREEFEVP-LDLVHCDVTKLAgsrAMQNRFDCVVMNPPFGTQPD 131
                 3579************99765.599**************************.********977687889999*********866555 PP

>> TIGR00406  prmA: ribosomal protein L11 methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.9   0.1   9.7e-16   2.7e-13     159     232 ..      47     123 ..      33     124 .. 0.85

  Alignments for each domain:
  == domain 1    score: 47.9 bits;  conditional E-value: 9.7e-16
   TIGR00406 159 kdkkviDvGcGSGiLsiaalklgaakvvavDiDplavesarkNlelNqvsdllqvklen...leqkiegkaDvivaN 232
                 ++ +v+D+GcG G+L+i+a++lga +vv++D+D+ a+e a +N+e  +v+ +l     +       +++++D +v N
  MMETSP1137-20121227|3621_1  47 EGMHVADLGCGGGVLGIGAALLGAVQVVGYDVDAEALEVASENREEFEVPLDLVHCDVTklaGSRAMQNRFDCVVMN 123
                 56789********************************************987655444334467888999**99988 PP

>> TIGR01983  UbiG: 3-demethylubiquinone-9 3-O-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.2   0.0   7.5e-13     2e-10      43     122 ..      41     122 ..      28     125 .. 0.89

  Alignments for each domain:
  == domain 1    score: 38.2 bits;  conditional E-value: 7.5e-13
   TIGR01983  43 knekkleglkvlDvGcGgGllseslarlgae.vtgiDlseelievAklhakkdplkkieyelksveelaeee..kesfDvvla 122
                  +++++eg++v D+GcGgG+l    a lga+ v+g D+ +e++evA + +++ ++  ++  +++v +la ++  +++fD v++
  MMETSP1137-20121227|3621_1  41 AQDEHIEGMHVADLGCGGGVLGIGAALLGAVqVVGYDVDAEALEVASENREEFEVP-LDLVHCDVTKLAGSRamQNRFDCVVM 122
                 56689************************988***********************6.99999999999866544889**9997 PP

>> TIGR00536  hemK_fam: methyltransferase, HemK family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.1   0.0   1.1e-11   3.1e-09     116     197 ..      49     131 ..      33     144 .. 0.81

  Alignments for each domain:
  == domain 1    score: 34.1 bits;  conditional E-value: 1.1e-11
   TIGR00536 116 khilDlgtGsGcIalalAleipnaeviavDistdalavaeeNaeklkle.erveliqsnlleslakq.kidlivsNPPYidked 197
                  h+ Dlg+G G  +++ Al  + ++v + D+  +al+va+eN e++++  + v+   ++l  s a+q ++d +v NPP+  + d
  MMETSP1137-20121227|3621_1  49 MHVADLGCGGGVLGIGAALLGA-VQVVGYDVDAEALEVASENREEFEVPlDLVHCDVTKLAGSRAMQnRFDCVVMNPPFGTQPD 131
                 79**************999888.************************982344444555555555558**********966655 PP

>> TIGR03533  L3_gln_methyl: protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.4   0.0   2.2e-11   6.2e-09     123     214 ..      49     141 ..      33     158 .. 0.78

  Alignments for each domain:
  == domain 1    score: 33.4 bits;  conditional E-value: 2.2e-11
   TIGR03533 123 krvldlctGsGClaiaaaeafpeaevdavDisedaLevaeenieeyeledrveliqsdlfe....alegkkydlivsnPPYvdaeelaelpeEyrh 214
                  +v dl +G G l+i aa      +v   D+ ++aLeva+en ee+e+     l++ d+ +    +  ++++d +v nPP+ ++ + + +   + h
  MMETSP1137-20121227|3621_1  49 MHVADLGCGGGVLGIGAAL-LGAVQVVGYDVDAEALEVASENREEFEVPL--DLVHCDVTKlagsRAMQNRFDCVVMNPPFGTQPDSNGIDVAFLH 141
                 5899***********9876.6899********************999864..444444433111134599***********999888777666665 PP

>> TIGR01177  TIGR01177: TIGR01177 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.2   0.0   2.6e-11   7.1e-09     182     269 ..      47     137 ..      26     167 .. 0.86

  Alignments for each domain:
  == domain 1    score: 33.2 bits;  conditional E-value: 2.6e-11
   TIGR01177 182 egdrvlDPfcGTGgilIEAgLlGi.kviglDidekmveGariNLehYgiedfkvkrldakklplr...sesvdaiatDpPYgrstkaagekl 269
                 eg +v+D  cG G + I A+LlG+ +v+g D+d++  e a +N e++ ++   +   d++kl  +   ++ +d ++  pP+g +   +g + 
  MMETSP1137-20121227|3621_1  47 EGMHVADLGCGGGVLGIGAALLGAvQVVGYDVDAEALEVASENREEFEVPL-DLVHCDVTKLAGSramQNRFDCVVMNPPFGTQPDSNGIDV 137
                 688999999**************64899********************998.899*******9875556*************9987776654 PP

>> TIGR02021  BchM-ChlM: magnesium protoporphyrin O-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.5   0.1     3e-09   8.1e-07      44     123 ..      37     121 ..      31     125 .. 0.78

  Alignments for each domain:
  == domain 1    score: 26.5 bits;  conditional E-value: 3e-09
   TIGR02021  44 llewlpkdslkGkkvlDAGCGtGllsielAkrGa.ivkavDiseklvelarkraek.edeaenveFevndl...eslegkfDavv 123
                 l+   +++ ++G++v D GCG G+l i  A  Ga +v++ D+ ++ +e+a ++ e+ e + + v+  v  l   ++++++fD vv
  MMETSP1137-20121227|3621_1  37 LMVAAQDEHIEGMHVADLGCGGGVLGIGAALLGAvQVVGYDVDAEALEVASENREEfEVPLDLVHCDVTKLagsRAMQNRFDCVV 121
                 333445559************************868******9999999876555516677889999999843345669999998 PP

>> TIGR00537  hemK_rel_arch: putative methylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.9   0.0   2.6e-09   7.2e-07       9     101 ..      37     135 ..      30     183 .. 0.86

  Alignments for each domain:
  == domain 1    score: 26.9 bits;  conditional E-value: 2.6e-09
   TIGR00537   9 llleknlrelknddvleiGaGtGlvairlkekgk.kivatdinPfavkllkenaklnnveldvlesdlfe.....nvegkfdvilfnpPyleleedekr 101
                 l+++++ +++++ +v ++G G G++ i ++  g+ ++v+ d++  a  ++ en    +v ld+++ d+ +     +++++fd +++npP+    + + +
  MMETSP1137-20121227|3621_1  37 LMVAAQDEHIEGMHVADLGCGGGVLGIGAALLGAvQVVGYDVDAEALEVASENREEFEVPLDLVHCDVTKlagsrAMQNRFDCVVMNPPFGTQPDSNGI 135
                 34445556678899******************9999*******************************986444436888**********9776666555 PP

>> TIGR02469  CbiT: precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.6   0.0   1.9e-08   5.3e-06      18      94 ..      47     122 ..      36     126 .. 0.80

  Alignments for each domain:
  == domain 1    score: 24.6 bits;  conditional E-value: 1.9e-08
   TIGR02469  18 kkgdvllDiGaGtGsvtieaarlvpkgrvyaierneealelieeNlrrfgvsnieivegdapkaeeds..leeadavfv 94 
                 + g+++ D G+G G ++i aa  ++ ++v++ + ++eale+ +eN ++f+v   ++v+ d+ k +     ++ +d v++
  MMETSP1137-20121227|3621_1  47 E-GMHVADLGCGGGVLGIGAAL-LGAVQVVGYDVDAEALEVASENREEFEV-PLDLVHCDVTKLAGSRamQNRFDCVVM 122
                 4.899*************9986.5889**********************76.567777788854444334667777765 PP

>> TIGR00095  TIGR00095: RNA methyltransferase, RsmD family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.2   0.0   1.7e-08   4.6e-06      49     144 ..      44     136 ..      37     177 .. 0.79

  Alignments for each domain:
  == domain 1    score: 24.2 bits;  conditional E-value: 1.7e-08
   TIGR00095  49 keivgakvLdlfaGsgalglEALsRgakkvvfveqdkkvaktlkeNlstlklskeqatvlndaeralavlakketvfdiiylDPPfevklleaile 144
                 ++i+g++v dl  G g lg+ A   ga +vv  + d+++ ++  eN + ++++     +++ ++ +la + + +  fd++ + PPf ++   + ++
  MMETSP1137-20121227|3621_1  44 EHIEGMHVADLGCGGGVLGIGAALLGAVQVVGYDVDAEALEVASENREEFEVPL---DLVHCDVTKLAGSRAMQNRFDCVVMNPPFGTQPDSNGID 136
                 679************************************************988...5555555677777777888***********987444443 PP

>> TIGR01934  MenG_MenH_UbiE: ubiquinone/menaquinone biosynthesis methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.0     1e-06   0.00028      39     112 ..      47     122 ..      35     128 .. 0.82

  Alignments for each domain:
  == domain 1    score: 18.1 bits;  conditional E-value: 1e-06
   TIGR01934  39 keekvlDvatGtGdlaielakkaeakvtgvDlseemLevakkkakekeeanvefieadaeeLp...fednsfdavti 112
                 ++ +v D+ +G G l i  a   + +v+g+D+ +e Leva++  +e  e +++ ++ d+++L      +n fd+v +
  MMETSP1137-20121227|3621_1  47 EGMHVADLGCGGGVLGIGAALLGAVQVVGYDVDAEALEVASENREEF-EVPLDLVHCDVTKLAgsrAMQNRFDCVVM 122
                 7899****************9999*****************996555.5799*******999744455677777765 PP

>> TIGR02987  met_A_Alw26: type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   3.2e-06   0.00089      69     124 ..      76     128 ..      26     176 .. 0.87

  Alignments for each domain:
  == domain 1    score: 15.9 bits;  conditional E-value: 3.2e-06
   TIGR02987  69 adideklLerakkllselaaleisiklknslsdvlllieeyaek..fdivitNPPykn 124
                 +d+d ++Le+a+++ +e++     + l+  ++dv +l+ + a +  fd+v++NPP++ 
  MMETSP1137-20121227|3621_1  76 YDVDAEALEVASENREEFE-----VPLDLVHCDVTKLAGSRAMQnrFDCVVMNPPFGT 128
                 7999999999999988887.....8888889998888777665555*********974 PP

>> TIGR03704  PrmC_rel_meth: putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.3   1.1e-05    0.0031      81     162 ..      42     125 ..      31     134 .. 0.70

  Alignments for each domain:
  == domain 1    score: 14.8 bits;  conditional E-value: 1.1e-05
   TIGR03704  81 akersarlvvvdlccGsGavgaalaaaldavelhaadidpaavrcarrnladaGg..rvyeGdlye.alptelrGrvdillanvp 162
                   e+ + + v+dl cG G +g+  aa l av++   d+d  a++ a  n ++      + + d+ + a  ++++ r d ++ n p
  MMETSP1137-20121227|3621_1  42 QDEHIEGMHVADLGCGGGVLGIG-AALLGAVQVVGYDVDAEALEVASENREEFEVplDLVHCDVTKlAGSRAMQNRFDCVVMNPP 125
                 344555679***********997.678999****************999776543113344444432344555666666666655 PP

>> TIGR02072  BioC: biotin biosynthesis protein BioC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   7.8e-05     0.021      21     104 ..      34     123 ..      31     126 .. 0.76

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 7.8e-05
   TIGR02072  21 kkLlellkekrkfepakvLdiGcGtGiltrallkrfpqaelialDiseemleqakkkls....nvqficgdieklp...lekksfDlivSn 104
                 ++Ll +  + +++e  +v d+GcG G+l    ++ + +++++  D+ +e le+a ++ +     ++ ++ d+ kl      +++fD++v n
  MMETSP1137-20121227|3621_1  34 AHLLMVAAQDEHIEGMHVADLGCGGGVLG-IGAALLGAVQVVGYDVDAEALEVASENREefevPLDLVHCDVTKLAgsrAMQNRFDCVVMN 123
                 566666666669999***********665.5666777777***************999999997777777777765111556669999866 PP

>> TIGR04074  bacter_Hen1: 3' terminal RNA ribose 2'-O-methyltransferase Hen1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   9.8e-05     0.027     273     325 ..      38      89 ..       3     112 .. 0.77

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 9.8e-05
   TIGR04074 273 avvaalresgarsvlDlGcGegkLlkaLlaekqfekivgvdvsareLekakrr 325
                 +v a+ ++ +  +v+DlGcG g L    +a   + ++vg dv a++Le+a++ 
  MMETSP1137-20121227|3621_1  38 MVAAQDEHIEGMHVADLGCGGGVLG-IGAALLGAVQVVGYDVDAEALEVASEN 89 
                 5666667788899*******99874.33444567789***********99764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (290 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       136  (0.0331546); expected 82.0 (0.02)
Passed bias filter:                      123  (0.0299854); expected 82.0 (0.02)
Passed Vit filter:                        22  (0.00536324); expected 4.1 (0.001)
Passed Fwd filter:                        15  (0.00365675); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.19u 0.22s 00:00:00.41 Elapsed: 00:00:00.42
# Mc/sec: 911.35
//
Query:       MMETSP1137-20121227|3622_1  [L=71]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0036   13.9   0.1     0.0038   13.8   0.1    1.0  1  TIGR03207 cyc_hxne_CoA_dh: cyclohexanecarboxyl-CoA dehydrogenase
     0.0066   13.4   0.0     0.0068   13.4   0.0    1.0  1  TIGR03203 pimD_small: pimeloyl-CoA dehydrogenase, small subunit


Domain annotation for each model (and alignments):
>> TIGR03207  cyc_hxne_CoA_dh: cyclohexanecarboxyl-CoA dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.1   1.8e-06    0.0038     312     369 ..       1      59 [.       1      62 [. 0.87

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 1.8e-06
   TIGR03207 312 amckwwapklaydvihqcllshghggydrg.dleqrlrdvlglqigdgtaqimktiiar 369
                 am k  apk+a  v+ +c   hg  g  ++ ++   +     l++ dg  ++    ia+
  MMETSP1137-20121227|3622_1   1 AMIKAVAPKMAQAVVDRCQQIHGGMGLCTDtPMAHFFMWARALRLADGPDEVHLASIAK 59 
                 89*********************999998879999999999999999988877666665 PP

>> TIGR03203  pimD_small: pimeloyl-CoA dehydrogenase, small subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.0   3.3e-06    0.0068     324     375 ..       9      60 ..       1      62 [. 0.87

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 3.3e-06
   TIGR03203 324 kslkfvgqqsiqlhggigmtmeakighyfkrltmiektfgdtdyhlarvsaa 375
                 k  + v +++ q+hgg+g+  ++ + h+f     +  + g  + hla +++a
  MMETSP1137-20121227|3622_1   9 KMAQAVVDRCQQIHGGMGLCTDTPMAHFFMWARALRLADGPDEVHLASIAKA 60 
                 66777889999*******************9999999999999999999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (71 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        76  (0.0185275); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.08u 0.21s 00:00:00.28 Elapsed: 00:00:00.32
# Mc/sec: 292.85
//
Query:       MMETSP1137-20121227|3623_1  [L=133]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00057   17.0  15.0    0.00065   16.9  10.4    1.2  1  TIGR02794 tolA_full: protein TolA


Domain annotation for each model (and alignments):
>> TIGR02794  tolA_full: protein TolA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9  10.4   1.6e-07   0.00065      87     150 ..      64     126 ..      10     130 .. 0.80

  Alignments for each domain:
  == domain 1    score: 16.9 bits;  conditional E-value: 1.6e-07
   TIGR02794  87 kkkqaaeqarqkelekqraaaekaakkaeeaakekeekkkqaeeakakqaaEakakaeaeaKae 150
                  + q ae+  ++++  q+a+ + a+ +ae++  + ++++++a++++a+q++E ka+aea+a+++
  MMETSP1137-20121227|3623_1  64 SQVQYAEESLIETQ-IQEAENQLATLRAEAQVLQLRRQQQEAAARRAQQQEEEKAAAEAAARQQ 126
                 45555655544444.788888888889*******999**********************98542 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (133 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       403  (0.0982448); expected 82.0 (0.02)
Passed bias filter:                      160  (0.0390054); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.14u 0.21s 00:00:00.35 Elapsed: 00:00:00.28
# Mc/sec: 605.33
//
Query:       MMETSP1137-20121227|3624_1  [L=270]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.059   10.8   2.0       0.26    8.8   0.2    2.5  2  TIGR01333 cyt_b559_beta: cytochrome b559, beta subunit


Domain annotation for each model (and alignments):
>> TIGR01333  cyt_b559_beta: cytochrome b559, beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.1     0.023        95      12      20 ..     127     135 ..     124     141 .. 0.85
   2 ?    8.8   0.2   6.2e-05      0.26       9      25 ..     189     205 ..     185     219 .. 0.88

  Alignments for each domain:
  == domain 1    score: 0.5 bits;  conditional E-value: 0.023
   TIGR01333  12 PiFtvRWLA 20 
                 PiF + W+ 
  MMETSP1137-20121227|3624_1 127 PIFLFEWVT 135
                 9*****986 PP

  == domain 2    score: 8.8 bits;  conditional E-value: 6.2e-05
   TIGR01333   9 isYPiFtvRWLAvHaLA 25 
                 ++YP+   RWL + +L 
  MMETSP1137-20121227|3624_1 189 MTYPVLSARWLGMLGLV 205
                 79*********998885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (270 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        90  (0.0219405); expected 82.0 (0.02)
Passed bias filter:                       42  (0.0102389); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.17u 0.17s 00:00:00.34 Elapsed: 00:00:00.33
# Mc/sec: 1079.91
//
Query:       MMETSP1137-20121227|3625_1  [L=527]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (527 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       153  (0.0372989); expected 82.0 (0.02)
Passed bias filter:                      103  (0.0251097); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.14s 00:00:00.50 Elapsed: 00:00:00.45
# Mc/sec: 1545.74
//
Query:       MMETSP1137-20121227|3626_1  [L=560]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (560 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        32  (0.00780107); expected 82.0 (0.02)
Passed bias filter:                       26  (0.00633837); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.18s 00:00:00.51 Elapsed: 00:00:00.35
# Mc/sec: 2111.83
//
Query:       MMETSP1137-20121227|3627_1  [L=283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0022   14.2   1.3     0.0029   13.8   0.9    1.1  1  TIGR00578 ku70: ATP-dependent DNA helicase II, 70 kDa subunit (ku70)
  ------ inclusion threshold ------
      0.011   12.9   0.1      0.015   12.5   0.1    1.1  1  TIGR00055 uppS: di-trans,poly-cis-decaprenylcistransferase


Domain annotation for each model (and alignments):
>> TIGR00578  ku70: ATP-dependent DNA helicase II, 70 kDa subunit (ku70)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.9   1.4e-06    0.0029     473     580 ..     112     219 ..      82     223 .. 0.77

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 1.4e-06
   TIGR00578 473 ldlleaeqakdltlPkveklkkrlGelvdefkelvyPpdyapegkvakrkqagegsaskkpkvelseeelreevkkGtlgkltvsvlkdickaeGlrsgskkqellda 580
                 ld ++  +++ +        kkr  ++v+   +l   +  a+e k + + +  +++ sk       +e ++  + + +  k+tv+ lk +  a+    g+ kqelld 
  MMETSP1137-20121227|3627_1 112 LDAVDKAKVEAWFNNSGVGAKKRSADEVESVAQLNPKKMKAAEMKKTLKANGIDATGSKDELQGKVQETVKRAAAEAHYMKMTVPQLKAVLEANTQLKGGAKQELLDR 219
                 777777777777777777789999999999999875555777777777777778888888777777889***********************9988888899***994 PP

>> TIGR00055  uppS: di-trans,poly-cis-decaprenylcistransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.1   7.3e-06     0.015      60     118 ..     133     191 ..     114     219 .. 0.85

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 7.3e-06
   TIGR00055  60 kRpkeevdaLmelfekklkrekkelkkenvririiGdlsllskelqekikkaeeltknn 118
                 kR+++ev+++ +l  kk+k ++ +++ +   i + G  + l+ ++qe++k+a ++ + +
  MMETSP1137-20121227|3627_1 133 KRSADEVESVAQLNPKKMKAAEMKKTLKANGIDATGSKDELQGKVQETVKRAAAEAHYM 191
                 89*****************76666666667899******************98876544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (283 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       158  (0.0385178); expected 82.0 (0.02)
Passed bias filter:                      108  (0.0263286); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.24u 0.15s 00:00:00.39 Elapsed: 00:00:00.41
# Mc/sec: 911.05
//
Query:       MMETSP1137-20121227|3628_1  [L=324]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (324 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       208  (0.050707); expected 82.0 (0.02)
Passed bias filter:                      124  (0.0302292); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.11s 00:00:00.39 Elapsed: 00:00:01.67
# Mc/sec: 256.07
//
Query:       MMETSP1137-20121227|3629_1  [L=195]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (195 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       142  (0.0346173); expected 82.0 (0.02)
Passed bias filter:                      102  (0.0248659); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.15s 00:00:00.37 Elapsed: 00:00:00.46
# Mc/sec: 559.52
//
Query:       MMETSP1137-20121227|3630_1  [L=155]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.5e-07   29.1   0.0    2.4e-07   28.5   0.0    1.3  1  TIGR02381 cspD: cold shock domain protein CspD


Domain annotation for each model (and alignments):
>> TIGR02381  cspD: cold shock domain protein CspD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.5   0.0   5.9e-11   2.4e-07      13      59 ..      11      56 ..       5      64 .. 0.80

  Alignments for each domain:
  == domain 1    score: 28.5 bits;  conditional E-value: 5.9e-11
   TIGR02381 13 kGfGfisaegkdeDifahystiqmDGYrtLkaGqkvqf.evvqgekGa 59
                +GfGfi +e  +eD+f hys i+ DG  +L +   v+f +v ++ kG+
  MMETSP1137-20121227|3630_1 11 RGFGFIRPEDGGEDLFCHYSSIE-DG-NALEVDAPVEFvKVYDERKGK 56
                7*********************8.77.578888888874566666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (155 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        56  (0.0136519); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.16u 0.12s 00:00:00.28 Elapsed: 00:00:00.35
# Mc/sec: 584.52
//
Query:       MMETSP1137-20121227|3631_1  [L=128]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (128 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       106  (0.0258411); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.13s 00:00:00.29 Elapsed: 00:00:00.45
# Mc/sec: 375.44
//
Query:       MMETSP1137-20121227|3632_1  [L=248]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.7e-30  103.8   0.0    2.2e-30  103.4   0.0    1.1  1  TIGR00172 maf: septum formation protein Maf


Domain annotation for each model (and alignments):
>> TIGR00172  maf: septum formation protein Maf
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  103.4   0.0   5.4e-34   2.2e-30       2     184 ..      50     239 ..      49     240 .. 0.93

  Alignments for each domain:
  == domain 1    score: 103.4 bits;  conditional E-value: 5.4e-34
   TIGR00172   2 kkeliLaStSprRkelLeelgisfetavsefeEksnksedpreyVlrlakeKaqa.vaelladal......iigaDtivildgrileKpktkeeakkflrklsgeevevlTavaLiksagrellteldetkvafkalseeeieeYvesgeplevaGafkieg.kgailiekiegdysnvvGLplekllklL 184
                 +  ++L+S S +R ++L  +gi fe+a ++++Ek  + +dp e+Vl++ k+Ka a +  +  d        +i +D++v+ +g+ileKp++++ea++f+     +  e + +  + + a +  + ++d+ +v+f+ +s+e i++ +  g+   +aG+  +e      +i k+egd  +v GL+ +  ++lL
  MMETSP1137-20121227|3632_1  50 TR-IVLGSSSATRSAILTAMGIVFEVAKPNIDEKAIRFQDPAELVLAIGKAKATAlLTGKRGDEFkrdgalLITSDQVVVCNGQILEKPEDEAEARRFIEGYGTHAAETVGSCIVTDAASGSQWAHVDVARVHFSPISDEAIDKLIVEGDVFYCAGGLMVEHpLVEKFITKMEGDIDTVQGLSSVTARRLL 239
                 44.9***************************************************5555566666899999***************************************999999***99***************************************9736789***************977776665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (248 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       119  (0.0290102); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.21u 0.15s 00:00:00.36 Elapsed: 00:00:00.38
# Mc/sec: 861.40
//
Query:       MMETSP1137-20121227|3634_1  [L=311]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (311 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        49  (0.0119454); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.15s 00:00:00.38 Elapsed: 00:00:00.35
# Mc/sec: 1172.82
//
Query:       MMETSP1137-20121227|3635_1  [L=145]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (145 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.17s 00:00:00.33 Elapsed: 00:00:00.56
# Mc/sec: 341.76
//
Query:       MMETSP1137-20121227|3636_1  [L=438]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.03   11.3  18.3      0.041   10.9  12.7    1.1  1  TIGR01347 sucB: dihydrolipoyllysine-residue succinyltransferase, E2 component of oxoglutarate dehydrogenase (succinyl-transferring) complex
      0.055    9.6  11.5      0.062    9.4   7.9    1.0  1  TIGR00934 2a38euk: potassium uptake protein, Trk family
       0.14   10.1   2.6         15    3.5   0.0    2.3  2  TIGR01898 cas_TM1791_cmr6: CRISPR type III-B/RAMP module RAMP protein Cmr6
       0.48    7.1  16.3       0.65    6.6  11.3    1.1  1  TIGR00867 deg-1: degenerin
        3.3    3.1  46.2        4.1    2.7  32.0    1.1  1  TIGR02168 SMC_prok_B: chromosome segregation protein SMC
        4.9    2.4  20.8        6.3    2.0  14.4    1.0  1  TIGR02013 rpoB: DNA-directed RNA polymerase, beta subunit
        5.5    2.6  16.1        6.9    2.3  11.2    1.0  1  TIGR00834 ae: anion exchange protein
        6.6    2.8  31.7         10    2.2  21.9    1.3  1  TIGR02442 Cob-chelat-sub: cobaltochelatase subunit
        6.7    2.8  24.8          9    2.3  17.2    1.0  1  TIGR01865 cas_Csn1: CRISPR-associated protein Cas9/Csn1, subtype II/NMEMI
        7.3    3.0  24.3         12    2.2  16.8    1.3  1  TIGR03895 protease_PatA: cyanobactin maturation protease, PatA/PatG family


Domain annotation for each model (and alignments):
>> TIGR01347  sucB: dihydrolipoyllysine-residue succinyltransferase, E2 component of oxoglutarate dehydrogenase (succinyl-transferring) complex
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9  12.7    0.0001     0.041      77     196 ..     282     410 ..     239     415 .. 0.54

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 0.0001
   TIGR01347  77 ssaaaeaasekskeekeekaaakaekakeaaekk...kalspaarklakeegidleavektkktgrvtkedivkkeekkasaakeaaakaakaaena......atrseeRvkmtRlrqriaerLleakn 196
                 ++  +++++++++++++++  +++++++ ++++    ++l++++++ + ++++++++ ++++++++ ++++++++++++++++++++++++++++++      +  + +R ++   +q +a++L  a++
  MMETSP1137-20121227|3636_1 282 GTGPTQQQPQQHQHQQNQQLLQQQQHQQLEQQQLqqfQQLQQQVQQQVLQQQLQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQHgsypqqGLAQLQRQQLGLAQQGLAQQLGLAQQ 410
                 455677888888887777777777665444444312255555555555555555555555544444444333333333322222222222222222223332244555666666666666666666655 PP

>> TIGR00934  2a38euk: potassium uptake protein, Trk family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   7.9   0.00015     0.062     306     397 ..     292     384 ..     183     405 .. 0.56

  Alignments for each domain:
  == domain 1    score: 9.4 bits;  conditional E-value: 0.00015
   TIGR00934 306 rrlstssieknsqqnltrlaktksfdd.skavrlersktidraeasdleeldrakdfqkmveknvkaakrkkknfkkreanlklfeksryakk 397
                 +   +++ +  +qq+ ++l ++++ +  + +++++++ ++++ ++++ ++ ++++++q+  +++ +++++++++ ++++++++  +++ y+++
  MMETSP1137-20121227|3636_1 292 QHQHQQNQQLLQQQQHQQLEQQQLQQFqQLQQQVQQQVLQQQLQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQHGSYPQQ 384
                 222222222221211111111111111112223333333333333333333333333333333333333333344444444444444444443 PP

>> TIGR01898  cas_TM1791_cmr6: CRISPR type III-B/RAMP module RAMP protein Cmr6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.0     0.036        15      72     129 ..     213     271 ..     141     281 .. 0.62
   2 ?   -0.6   5.2      0.64   2.6e+02      50      96 ..     329     374 ..     292     390 .. 0.51

  Alignments for each domain:
  == domain 1    score: 3.5 bits;  conditional E-value: 0.036
   TIGR01898  72 evfekkseeeelaeklfgtqekegevifldAiPiaeeldkeslle.lDiinpHykpyyq 129
                 +  + ++++  l+++l +t   +g+ + +dA+P + +++ es l+  D+in   k+++q
  MMETSP1137-20121227|3636_1 213 QTQQGQQPDAALITQLLATGPAAGNRVTTDALPSSITTELESWLKaADVINDVLKSARQ 271
                 333556666999999999***************99888777777637999988777765 PP

  == domain 2    score: -0.6 bits;  conditional E-value: 0.64
   TIGR01898  50 vlaeakdelknakkredeklla..evfekkseeeelaeklfgtqekege 96 
                 vl++   +l+++++++++++++  ++ ++++++++++++   +q+++ +
  MMETSP1137-20121227|3636_1 329 VLQQ---QLQQQQQQQQQQQQQqqQQQQQQQQQQQQQQQQQQQQQQQQQ 374
                 3333...222222222222222111112222222222222222222333 PP

>> TIGR00867  deg-1: degenerin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6  11.3    0.0016      0.65      86     185 ..     264     372 ..     243     398 .. 0.44

  Alignments for each domain:
  == domain 1    score: 6.6 bits;  conditional E-value: 0.0016
   TIGR00867  86 eaikevleaferaidks.......kkseaeekevkaerklkekasqkklkekgk.....keleeavfelafsqclckseekssereekesekkeeestks.plelskskcica 185
                 + +k++ + ++ ai++s       ++ ++++++++ +  ++++++q ++++ ++     ++++++v +++ +q++ ++++++++++++++++    ++++ + ++++++   +
  MMETSP1137-20121227|3636_1 264 DVLKSARQQYSLAIGRSggtgptqQQPQQHQHQQNQQLLQQQQHQQLEQQQLQQfqqlqQQVQQQVLQQQLQQQQQQQQQQQQQQQQQQQQQ----QQQQqQQQQQQQQQQQQ 372
                 55666667777777777777776522223333333333333333333333333310000333333333333333332222222222222211....11111222222222222 PP

>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7  32.0      0.01       4.1     710     813 ..     288     392 ..     247     430 .. 0.44

  Alignments for each domain:
  == domain 1    score: 2.7 bits;  conditional E-value: 0.01
   TIGR02168 710 eeleeeleklrkeleelerklselkkelerlekeveqleerlaqlekeleeleeereeleeeleeaeeelkeaeeeieeleaeieqlkeelkalrea.lseleae 813
                 ++ +++ ++ +++l +++++ + ++++l+++++ ++q+++++ q++ +++++++++++++++ ++++++ +++++++++++++ +q+++++ +  ++ l++l+++
  MMETSP1137-20121227|3636_1 288 QQPQQHQHQQNQQLLQQQQHQQLEQQQLQQFQQLQQQVQQQVLQQQLQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQHGSYPQQgLAQLQRQ 392
                 222333333333333333333444444444444444444444444444333333333333333333333333333333333333333333322222102222211 PP

>> TIGR02013  rpoB: DNA-directed RNA polymerase, beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0  14.4     0.015       6.3     894     991 ..     294     381 ..     258     398 .. 0.40

  Alignments for each domain:
  == domain 1    score: 2.0 bits;  conditional E-value: 0.015
   TIGR02013 894 ekdkralkveeeeldkakkekeeelkillkeelkrlkellvkeekeaekeaklekaelakeaeekenelellkeylkelkklleekkeekkkleegde 991
                 +++++++  +++++++ ++++ +++++l+++ ++++ + + ++++++           +++++++++++++ +++++++++++++++++++++++g  
  MMETSP1137-20121227|3636_1 294 QHQQNQQLLQQQQHQQLEQQQLQQFQQLQQQVQQQVLQQQLQQQQQQ----------QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQHGSY 381
                 11111111122222222222222222222222222222211111111..........11111112222222222222222222233333444444444 PP

>> TIGR00834  ae: anion exchange protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3  11.2     0.017       6.9      89     172 ..     290     376 ..     251     389 .. 0.56

  Alignments for each domain:
  == domain 1    score: 2.3 bits;  conditional E-value: 0.017
   TIGR00834  89 kpedrdevlraLLlkhshqe.dakklealsaarslssigkslsseaseiekpee...gaplleseketeskllsvakdissreksklk 172
                   +++++  + LL++++hq+ ++++l+++++++ + ++  +l ++ ++++++++    + + ++++++++++++++++++++++++++
  MMETSP1137-20121227|3636_1 290 PQQHQHQQNQQLLQQQQHQQlEQQQLQQFQQLQQQVQQQ-VLQQQLQQQQQQQQqqqQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 376
                 456677778899999999852456666666655555533.444433333222221112222222222222222222222222222233 PP

>> TIGR02442  Cob-chelat-sub: cobaltochelatase subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2  21.9     0.025        10     318     389 ..     298     379 ..     267     421 .. 0.40

  Alignments for each domain:
  == domain 1    score: 2.2 bits;  conditional E-value: 0.025
   TIGR02442 318 e....qekeekkleekkeeak.pdeekedes.....eekekeeskkqeeeepgkddekeedekeeaeeeaesaeevalepag 389
                 +    q++++++le+++ ++  + +++ +++      +++++++++q++++++++++++++++++++++++++++++ +++g
  MMETSP1137-20121227|3636_1 298 NqqllQQQQHQQLEQQQLQQFqQLQQQVQQQvlqqqLQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQHG 379
                 0223322222222222211111111111111221111111111111111111111111111111111111111222222222 PP

>> TIGR01865  cas_Csn1: CRISPR-associated protein Cas9/Csn1, subtype II/NMEMI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3  17.2     0.022         9     415     500 ..     291     376 ..     280     384 .. 0.81

  Alignments for each domain:
  == domain 1    score: 2.3 bits;  conditional E-value: 0.022
   TIGR01865 415 ikkrkelykkvlneeqlkkLvklkftgwgrLSlKlleeiipkmselkeldelikelrekrnfeqlknksellfkenitkaqkaekq 500
                 +++++++ +++l+++q ++L++++++++ +L  ++ +++++++ + +++++ +++++++++ +q++++++   +++++++q++++q
  MMETSP1137-20121227|3636_1 291 QQHQHQQNQQLLQQQQHQQLEQQQLQQFQQLQQQVQQQVLQQQLQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 376
                 47789999***********************************9999999999988888887777766666666666644333333 PP

>> TIGR03895  protease_PatA: cyanobactin maturation protease, PatA/PatG family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2  16.8      0.03        12     179     326 ..     212     373 ..     205     400 .. 0.37

  Alignments for each domain:
  == domain 1    score: 2.2 bits;  conditional E-value: 0.03
   TIGR03895 179 lqlkrgekpdpeavrtallesAlpCdpeadeeveRvlaGkln....ikgalelltgekeseeav...........lveekeveeasgaevesaaeseteaipaaeaeeaasvsiesaaa..aekaakaaaeielsaaalaaaissaavsakasegvtssaassel 326
                 lq+++g++pd++ + + l     + +  +++     ++ +l+     +++++ + ++++++ +            +  ++ ++++++++ +  +++++++ + ++ ++ ++ ++++ ++  +++ ++++ +++++++++++  ++++ +++++++++  ++++  
  MMETSP1137-20121227|3636_1 212 LQTQQGQQPDAALITQLLATGPAAGNRVTTDALPSSITTELEswlkAADVINDVLKSARQQYSLaigrsggtgptQ--QQPQQHQHQQNQQLLQQQQHQQLEQQQLQQFQQLQQQVQQQvlQQQLQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ-Q 373
                 6777777777777777666655555444444433333333331100333333222222222211355566665422..2222222222222222222222222222222222222222200222222222222222222222222221111111111111111.1 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (438 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                      1419  (0.345929); expected 82.0 (0.02)
Passed bias filter:                      362  (0.0882496); expected 82.0 (0.02)
Passed Vit filter:                       169  (0.0411994); expected 4.1 (0.001)
Passed Fwd filter:                        46  (0.011214); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 1.18u 0.22s 00:00:01.40 Elapsed: 00:00:02.31
# Mc/sec: 250.27
//
Query:       MMETSP1137-20121227|3637_1  [L=161]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (161 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        67  (0.0163335); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.15s 00:00:00.32 Elapsed: 00:00:00.37
# Mc/sec: 574.33
//
Query:       MMETSP1137-20121227|3639_1  [L=165]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.66    6.7   7.2       0.82    6.4   4.2    1.7  1  TIGR01843 type_I_hlyD: type I secretion membrane fusion protein, HlyD family


Domain annotation for each model (and alignments):
>> TIGR01843  type_I_hlyD: type I secretion membrane fusion protein, HlyD family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   4.2    0.0002      0.82     137     243 ..       2     113 ..       1     143 [. 0.76

  Alignments for each domain:
  == domain 1    score: 6.4 bits;  conditional E-value: 0.0002
   TIGR01843 137 rksalraqlesleaqikqleaeleglqaqlqalrqqlelis.....eelealrkLkekglvsrlelLelereraelqgelaeleaeleklkaeldeleeklqeleqkfreev 243
                 +ksa++++++ l+++i++l++el++++++ q  ++   +++     e+++  r L+e+   s ++++     +++ ++  a + +++e l +el++ ++ ++e    ++e++
  MMETSP1137-20121227|3639_1   2 KKSAYDNTKAGLDSEIAKLQSELADAEKDKQHEESACFYYEsllgiEQVKLDRVLAERDGKSLNRTMPDGTVVRSFKELYAAKIQDQERLTRELRDRQKDIKENHGPNKEQM 113
                 6899*************************99999888877733333466777788888888888888888888888888888888888888888888888877666655554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (165 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       232  (0.0565578); expected 82.0 (0.02)
Passed bias filter:                      116  (0.0282789); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.20u 0.14s 00:00:00.34 Elapsed: 00:00:00.35
# Mc/sec: 622.23
//
Query:       MMETSP1137-20121227|3640_1  [L=597]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (597 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       161  (0.0392491); expected 82.0 (0.02)
Passed bias filter:                      103  (0.0251097); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.16s 00:00:00.56 Elapsed: 00:00:00.61
# Mc/sec: 1291.76
//
Query:       MMETSP1137-20121227|3641_1  [L=320]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.1e-52  174.3   0.0    7.2e-52  173.8   0.0    1.2  1  TIGR00171 leuD: 3-isopropylmalate dehydratase, small subunit
    5.4e-14   50.1   0.0    1.7e-12   45.2   0.0    2.1  1  TIGR02087 LEUD_arch: 3-isopropylmalate dehydratase, small subunit
    2.2e-09   35.0   0.1    5.1e-08   30.6   0.1    2.2  1  TIGR02084 leud: 3-isopropylmalate dehydratase, small subunit
  ------ inclusion threshold ------
      0.025   10.7   0.0      0.034   10.2   0.0    1.1  1  TIGR01340 aconitase_mito: aconitate hydratase, mitochondrial
      0.036   10.1   0.0      0.042    9.8   0.0    1.2  1  TIGR01342 acon_putative: putative aconitate hydratase


Domain annotation for each model (and alignments):
>> TIGR00171  leuD: 3-isopropylmalate dehydratase, small subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  173.8   0.0   8.7e-55   7.2e-52       1     187 [.      20     207 ..      20     208 .. 0.89

  Alignments for each domain:
  == domain 1    score: 173.8 bits;  conditional E-value: 8.7e-55
   TIGR00171   1 mkefkkltGlvvpldkanvdtdaiipkqflkkikrtGfgkhlfyewryld.....ekGke...pnpefvlnvpqyqgasillarenfGcGssrehapwalkdyGfkviiapsfadifynnsfkngllpirlseeeveellalvknkglkltvdleaqkvkdsegkvysfeidefrkhcllnGldeigltlqkede 187
                 m +f++l+G ++pld  nvdtd iipk++lk+ikrtG+g  +f e ry +      kG e   + ++fvln +qy+++ il+++++      r     a++ +G++ ii+ sfadifynn+fkng+lp++ls+ +v el+a  +   + ++vdl++qkv   +g +  fe+d+frkhcl+nGld+iglt+qk  e
  MMETSP1137-20121227|3641_1  20 MPKFVNLKGTAAPLDLQNVDTDMIIPKEYLKTIKRTGLGFAAFAELRYENpvevaRKGAEvaiERSDFVLNKQQYRNSVILVTGDEP-----R-ARTVAIAGFGIRCIISTSFADIFYNNCFKNGMLPLKLSRPQVLELMADAE-ALKPIEVDLPSQKVIRHDGSTFDFEVDSFRKHCLINGLDDIGLTMQKMAE 207
                 6789********************************************7422222567663335789***************98763.....3.34579***************************************998865.56789*****************************************9766 PP

>> TIGR02087  LEUD_arch: 3-isopropylmalate dehydratase, small subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.2   0.0     2e-15   1.7e-12       9     134 ..      37     181 ..      35     200 .. 0.72

  Alignments for each domain:
  == domain 1    score: 45.2 bits;  conditional E-value: 2e-15
   TIGR02087   9 dvdtdaiiPgrylrttdlkelakhamegidpefakkv.reG.dvivaGknfGi.............GssreqaalalkaaGvaaviaesfarifyrnainvGlplivae..dvtelikdGde...vevdlekgeirkvakkevlkl 134
                 +vdtd+iiP +yl+t++ + l+  a+++++ e + +v r+G +v +    f +             G      ++a+   G++++i+ sfa ify n   +G+  + ++  +v el+ d +    +evdl ++++++  + +++ +
  MMETSP1137-20121227|3641_1  37 NVDTDMIIPKEYLKTIKRTGLGFAAFAELRYENPVEVaRKGaEVAIERSDFVLnkqqyrnsvilvtGDEPRARTVAIAGFGIRCIISTSFADIFYNNCFKNGMLPLKLSrpQVLELMADAEAlkpIEVDLPSQKVIR-HDGSTFDF 181
                 8****************************9887755426663344444445431111111111111444455689***************************98887764589999999886334789999999985.55555554 PP

>> TIGR02084  leud: 3-isopropylmalate dehydratase, small subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.6   0.1   6.2e-11   5.1e-08       8     138 ..      36     187 ..      34     202 .. 0.65

  Alignments for each domain:
  == domain 1    score: 30.6 bits;  conditional E-value: 6.2e-11
   TIGR02084   8 dnvdtdviiparylntsdpkelakhcmedldk.........efkkkvkegdilvagknfg......cgssrehapiaikasgiscviaksfarifyrnainiglpive.se....eavdeleegdevevdl.ekgiiknvkkgkeykakpfp 138
                 +nvdtd+iip  yl t + + l   ++ +l+          + +    + d ++  +++       +g       +ai   gi c+i+ sfa ify n+   g+  ++ s+    e + ++e    +evdl ++ +i+    + ++++  f 
  MMETSP1137-20121227|3641_1  36 QNVDTDMIIPKEYLKTIKRTGLGFAAFAELRYenpvevarkGAEVAIERSDFVLNKQQYRnsvilvTGDEPRARTVAIAGFGIRCIISTSFADIFYNNCFKNGMLPLKlSRpqvlELMADAEALKPIEVDLpSQKVIRHDGSTFDFEVDSFR 187
                 59**************999887655555544411110000033333344566665555431122225666667789***********************99886444313222225666777778899999446788877777777777775 PP

>> TIGR01340  aconitase_mito: aconitate hydratase, mitochondrial
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   4.2e-05     0.034     648     694 ..     116     162 ..     105     186 .. 0.85

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 4.2e-05
   TIGR01340 648 lGgriiivksfarihetnlkkqGvlpltfaneadydkiqaedkvell 694
                 +G r ii  sfa i   n  k+G+lpl ++ ++  +++   + ++ +
  MMETSP1137-20121227|3641_1 116 FGIRCIISTSFADIFYNNCFKNGMLPLKLSRPQVLELMADAEALKPI 162
                 58899*************************99988888777766655 PP

>> TIGR01342  acon_putative: putative aconitate hydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.0   5.1e-05     0.042     551     583 ..     114     146 ..      35     168 .. 0.89

  Alignments for each domain:
  == domain 1    score: 9.8 bits;  conditional E-value: 5.1e-05
   TIGR01342 551 rflgveavlaksfarihkanlvnfgvlpleidn 583
                   +g++++++ sfa i   n +  g+lpl++  
  MMETSP1137-20121227|3641_1 114 AGFGIRCIISTSFADIFYNNCFKNGMLPLKLSR 146
                 4579*************************9974 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (320 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       102  (0.0248659); expected 82.0 (0.02)
Passed bias filter:                      101  (0.0246221); expected 82.0 (0.02)
Passed Vit filter:                        19  (0.00463189); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.31u 0.16s 00:00:00.47 Elapsed: 00:00:00.48
# Mc/sec: 879.93
//
Query:       MMETSP1137-20121227|3642_1  [L=234]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.8e-26   90.3   0.0    3.3e-26   90.1   0.0    1.0  1  TIGR01198 pgl: 6-phosphogluconolactonase
     0.0079   13.4   0.1        1.1    6.3   0.0    2.3  2  TIGR00502 nagB: glucosamine-6-phosphate deaminase


Domain annotation for each model (and alignments):
>> TIGR01198  pgl: 6-phosphogluconolactonase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.1   0.0   1.6e-29   3.3e-26      13     234 .]       3     225 ..       1     225 [. 0.87

  Alignments for each domain:
  == domain 1    score: 90.1 bits;  conditional E-value: 1.6e-29
   TIGR01198  13 aervatklekalaekgqallalsGGrspialleaLaaqkldW.srihlflgDERivplddadsntkllrealLdrvaipasnihlvptelsedveeaaekyeqelaaakqpe......evpsfDlllLGmGpDgHtaSLFPetpalqeteklvvvltkspkppheRitltlpvlnaakkvlllvaG......eeKaavlaeilkveaeelslpaalvlgsekllwlldeaaaekl 234
                 +e++ +++e a++e+g+++la+ GG+  ++    L  ++ +W s+++l ++   +vp+dda   t++  +al+ +     s i l  t++     ++a++y+++l+a+ + +       +p+fDl ++G+G+DgH+ SL+P + ++ e+++ vv ++ ++      i+l+lpv+ a+k+v++++ G      + K +++ ++++ e+e +s paa+ +  +   w++deaaa+kl
  MMETSP1137-20121227|3642_1   3 LEQLNAAAEAAIKERGHFALAIPGGSVLKM----LQGSAPPWaSQTTLAYVNHKCVPMDDAALATHAKATALFLSGWRGVSPILLSGTADAP---AEAAAYQEKLEALPDYKlprneaGLPVFDLSIIGVGDDGHVGSLYPGRIEVLERTRWVVPVEMKIPG---SISLSLPVMSASKQVIIAACGvsdkypQGKSDAMRRAIEGEEELTSFPAAGLRAVA--DWIIDEAAASKL 225
                 6889999******************96555....6778889945799**************************99999999**999999954...7777788888887765555566779*******************************88888776655...7********************4444444599*********************9887..8*****999875 PP

>> TIGR00502  nagB: glucosamine-6-phosphate deaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.3   0.0   0.00056       1.1     132     158 ..     119     146 ..     111     154 .. 0.83
   2 !    4.8   0.0    0.0016       3.3     192     249 ..     165     227 ..     151     232 .. 0.72

  Alignments for each domain:
  == domain 1    score: 6.3 bits;  conditional E-value: 0.00056
   TIGR00502 132 dlfllGiGadGhiafnePgs.slesrtr 158
                 dl + G+G dGh++   Pg  ++ +rtr
  MMETSP1137-20121227|3642_1 119 DLSIIGVGDDGHVGSLYPGRiEVLERTR 146
                 7899**********99998536778887 PP

  == domain 2    score: 4.8 bits;  conditional E-value: 0.0016
   TIGR00502 192 tildskevlllvsG......kekaeavkklvegsvn.edvtisalqlhkkvivvadeeaaqelkv 249
                  +  sk+v++ + G      + k++a+++++eg  + + ++++ l+   +   ++de+aa++l +
  MMETSP1137-20121227|3642_1 165 VMSASKQVIIAACGvsdkypQGKSDAMRRAIEGEEElTSFPAAGLRAVADW--IIDEAAASKLSS 227
                 444588899988884333334599********9865367888888776665..679999999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (234 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        70  (0.0170648); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.23u 0.13s 00:00:00.36 Elapsed: 00:00:00.40
# Mc/sec: 772.14
//
Query:       MMETSP1137-20121227|3643_1  [L=258]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.6e-07   29.2   4.8      9e-06   23.4   3.3    2.6  1  TIGR00951 2A43: lysosomal Cystine Transporter


Domain annotation for each model (and alignments):
>> TIGR00951  2A43: lysosomal Cystine Transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.4   3.3   2.2e-09     9e-06       4     194 ..      36     217 ..      32     246 .. 0.63

  Alignments for each domain:
  == domain 1    score: 23.4 bits;  conditional E-value: 2.2e-09
   TIGR00951   4 qilGlvyvvawsisfyPqiilnfkrKsvvglsldfvsLnlvgfsayvifnllllyvskiknefnlvnpksvppvllndvffalhavllclivllqvlayerdnqrvsskaiallivalla..afatllvavlrkitlLafvtslsyiklavtlvkylpqayfnytrkstegwsignvlldftGGtlslLqlil 194
                 + lG+++vv++ ++ +Pq++++ ++  + gls  ++sL+l + +a   +          +  + +++++  + +ll+++   +  +  +  + lq l+ +     v    + +l+  +l+  + +t l+    +it  ++      + + ++l  +lpq+  n ++++t++++  + +l+  GG++ +   + 
  MMETSP1137-20121227|3643_1  36 KTLGFGIVVGSTLVKLPQVVKIIRAGNADGLSPTSISLELLANVAAFTYY--------ARLGYAFSTWGENAFLLLQNIAIFVLCFYYTRRIGLQFLLIVASLTAVGYTLYFRLLPDILVpeIVCTELALPRCRITCEEVAG---TLPILLSLGSRLPQIVQNIQQGHTGQLAFATYFLNTLGGAARVFTTMQ 217
                 89**************************************9988877663........344666777773333333333333333333333333333333333444445555555333331133333333333344444333...3445567778888*************************9988766543 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (258 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       168  (0.0409556); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.25u 0.17s 00:00:00.42 Elapsed: 00:00:00.31
# Mc/sec: 1098.49
//
Query:       MMETSP1137-20121227|3644_1  [L=148]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        2.3    5.1   8.9      0.069   10.1   1.6    1.7  2  TIGR01541 tape_meas_lam_C: phage tail tape measure protein, lambda family


Domain annotation for each model (and alignments):
>> TIGR01541  tape_meas_lam_C: phage tail tape measure protein, lambda family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.1     0.084   3.4e+02     234     267 ..      15      45 ..      11      54 .. 0.50
   2 ?   10.1   1.6   1.7e-05     0.069     217     261 ..      96     141 ..      91     144 .. 0.88

  Alignments for each domain:
  == domain 1    score: -2.1 bits;  conditional E-value: 0.084
   TIGR01541 234 gaasssgaialyaaavkfnaagvgstaggskYep 267
                 g as+s+   + a a+          a+gs Ye+
  MMETSP1137-20121227|3644_1  15 GLASGSVHENVTATAA---TRPLCAAADGSLYES 45 
                 4444444443333222...222445566666665 PP

  == domain 2    score: 10.1 bits;  conditional E-value: 1.7e-05
   TIGR01541 217 aglvqsilsliGgavSggaasssgaialyaaavkfnaag.vgstag 261
                 ++l ++i s++G ++ + +  ++ a a +aaa+++ a   vg  ++
  MMETSP1137-20121227|3644_1  96 SKLFGTIASWLGLGTPSPSHAAADAAATEAAAAAPSAPTrVGNAGE 141
                 899************9999999*************99986666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (148 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        70  (0.0170648); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.18u 0.19s 00:00:00.37 Elapsed: 00:00:00.44
# Mc/sec: 443.96
//
Query:       MMETSP1137-20121227|3645_1  [L=109]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (109 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        61  (0.0148708); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.13s 00:00:00.27 Elapsed: 00:00:00.27
# Mc/sec: 532.84
//
Query:       MMETSP1137-20121227|3646_1  [L=129]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (129 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       110  (0.0268162); expected 82.0 (0.02)
Passed bias filter:                      107  (0.0260848); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.17s 00:00:00.34 Elapsed: 00:00:00.33
# Mc/sec: 515.96
//
Query:       MMETSP1137-20121227|3647_1  [L=181]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        4.7    3.2  16.5        5.2    3.0  11.4    1.0  1  TIGR00934 2a38euk: potassium uptake protein, Trk family


Domain annotation for each model (and alignments):
>> TIGR00934  2a38euk: potassium uptake protein, Trk family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0  11.4    0.0013       5.2     242     367 ..      12     159 ..       1     176 [. 0.44

  Alignments for each domain:
  == domain 1    score: 3.0 bits;  conditional E-value: 0.0013
   TIGR00934 242 sekfakrresrdidpedlyrsimmlqekheata................kirdkiseanslaaesdees............sesrriqekikrrlstssiekns......qqnltrlaktksfdd.skavrlersktidra...easdleeldrakdfqkmvek 367
                   + + + +s +++++d ++s m+       t+                k++   +            +            +e r+++ek k ++   ++e+ +           r +++k  ++  ka rl+r++ ++ a   +++d  e +r +d +++  k
  MMETSP1137-20121227|3647_1  12 VREPKTEEKSAGVEANDAQQSRMQSTRPSHKTDprgadksvskcerkfpKKQSDPR------------NawdgsqvtaerlAENRLLREKFKEKPDSMTVEEREraeqliA----RDQRKKEKKErMKAERLNRAEKNRIAhenRHKDRVEKARMQDRERLAAK 159
                 33344456677788888888888776544433333333333322222222222222............1333333333334777899999999888888887773322220....2222222222333334444333333300033333333333333333222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (181 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       318  (0.0775232); expected 82.0 (0.02)
Passed bias filter:                      122  (0.0297416); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.23u 0.14s 00:00:00.37 Elapsed: 00:00:00.43
# Mc/sec: 555.58
//
Query:       MMETSP1137-20121227|3648_1  [L=538]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (538 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        89  (0.0216967); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.17s 00:00:00.53 Elapsed: 00:00:00.86
# Mc/sec: 825.70
//
Query:       MMETSP1137-20121227|3649_1  [L=445]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.7e-76  253.5   0.0    1.8e-50  170.0   0.0    2.1  2  TIGR00322 diphth2_R: diphthamide biosynthesis enzyme Dph1/Dph2 domain
    4.1e-37  125.9   0.0      1e-26   91.7   0.0    2.1  2  TIGR03682 arCOG04112: diphthamide biosynthesis enzyme Dph2
    5.7e-22   75.9   0.0    1.9e-11   41.2   0.0    2.1  2  TIGR00272 DPH2: diphthamide biosynthesis protein 2


Domain annotation for each model (and alignments):
>> TIGR00322  diphth2_R: diphthamide biosynthesis enzyme Dph1/Dph2 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.2   0.0     7e-27   9.5e-24       1      71 [.      62     131 ..      62     138 .. 0.96
   2 !  170.0   0.0   1.3e-53   1.8e-50     141     320 .]     135     308 ..     129     308 .. 0.96

  Alignments for each domain:
  == domain 1    score: 82.2 bits;  conditional E-value: 7e-27
   TIGR00322   1 ynfeidktveeikkrnakrVaLQfPdgllkdavevadllkekakgaevyilgdttyGaCcvdevaakhlga 71 
                 ynfe++kt++++++ +a++VaLQfP+gll++a+ +ad++ e+++gae++i+gd+tyGaCcvd++aa++l+ 
  MMETSP1137-20121227|3649_1  62 YNFEVPKTIWRVQQLKATQVALQFPEGLLMFATTLADII-ERFTGAEAVIMGDVTYGACCVDDLAAAALDX 131
                 89*************************************.*************************999875 PP

  == domain 2    score: 170.0 bits;  conditional E-value: 1.3e-53
   TIGR00322 141 eagyeeviipqlkprvlspgevlgctspaleadeedkvllfigdgrfhllglalatpkpkvyvydpysskleeeeseaerllrrRyaaiekakdakkvGIivgtlggqgrlelierlkellkkagkkaytilvgeinpakLanfpeiDafVvvaCprlslddskefekpvltpyEleial 320
                  a++  ++ipq kp  ls ge+lgct+p +++    +v++f++dgrfh++++++a+p+  +y+ydpy + l+ e +++er+ r+   a+++a  a+++G+++gtlg+qg+++++ +l+++l++ag +++t+l++e+ p+kLa+fpe+ a+V+v Cprls+d++++f +p+l+pyE+e+al
  MMETSP1137-20121227|3649_1 135 AAHFAAATIPQCKP--LSAGETLGCTAPTIDNC---DVVVFVADGRFHPEAVMIANPSLPLYRYDPYGKALTLEGYDHERM-RQXADAVKRAAAASSWGLVLGTLGRQGNPDILFHLQQILRNAGVHFVTVLLSEVLPSKLAEFPEVGAWVQVCCPRLSIDWGHAFGAPLLSPYEAEVAL 308
                 46778899******..************99998...8899*************************************9887.66799*******************************************************************************************97 PP

>> TIGR03682  arCOG04112: diphthamide biosynthesis enzyme Dph2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.6   0.0   7.4e-12     1e-08       2      50 ..      78     127 ..      77     148 .. 0.82
   2 !   91.7   0.0   7.6e-30     1e-26     135     306 ..     148     321 ..     132     323 .. 0.91

  Alignments for each domain:
  == domain 1    score: 32.6 bits;  conditional E-value: 7.4e-12
   TIGR03682   2 akkvllqlPeGLkrealeiaeklee.kgvevilsgepvfGaCDladdevl 50 
                 a +v+lq+PeGL + a  +a+ +e  +g+e+++ g+ ++GaC + d  + 
  MMETSP1137-20121227|3649_1  78 ATQVALQFPEGLLMFATTLADIIERfTGAEAVIMGDVTYGACCVDDLAAA 127
                 789********************888****************88665543 PP

  == domain 2    score: 91.7 bits;  conditional E-value: 7.6e-30
   TIGR03682 135 vaapgqvLGCnfsaaksveadavlfvgtGkFhplglal.atkkeVvlvdplsgkvedieeeiekllrvrlakiskaldakkvgilvstkkGQlrkelaeelkklleekgkeallvlldeispdkllnl.eldavvvtaCPRiaiDdaerfkkpvltpeEleivlgkr...keyklde 306
                    +g  LGC+   ++  ++d+v+fv++G+Fhp  + + ++  + + +dp+ + +  +e   ++ +r+   ++++a  a+++g++++t   Q  +++  +l++ l+++g++ ++vll e+ p+kl ++ e+ a v + CPR++iD  + f  p+l+p+E+e++lg r    +y +d 
  MMETSP1137-20121227|3649_1 148 PLSAGETLGCTAPTID--NCDVVVFVADGRFHPEAVMIaNPSLPLYRYDPYGKAL-TLEGYDHERMRQXADAVKRAAAASSWGLVLGTLGRQGNPDILFHLQQILRNAGVHFVTVLLSEVLPSKLAEFpEVGAWVQVCCPRLSIDWGHAFGAPLLSPYEAEVALGARqwlAQYPMDY 321
                 5678999********9..9******************978899********9776.45555567789999**********************************************************88***********************************997777888875 PP

>> TIGR00272  DPH2: diphthamide biosynthesis protein 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.2   0.0   1.4e-14   1.9e-11      36     118 ..      63     143 ..      38     169 .. 0.84
   2 !   32.9   0.0   4.3e-12   5.9e-09     267     376 ..     209     316 ..     190     424 .. 0.85

  Alignments for each domain:
  == domain 1    score: 41.2 bits;  conditional E-value: 1.4e-14
   TIGR00272  36 fyeieatveyikqgneqrvaLqFPDellkdsekvvklleskfreskkkvfvLaDtaYssCCvDevaaehvdaeav.vhfGeaCl 118
                  +e+ +t+  ++q +  +vaLqFP+ ll  +  ++ ++e  f  + ++  ++ D +Y++CCvD+ aa+ +d   +  hf  a  
  MMETSP1137-20121227|3649_1  63 NFEVPKTIWRVQQLKATQVALQFPEGLLMFATTLADIIER-F--TGAEAVIMGDVTYGACCVDDLAAAALDXRXLaAHFAAATI 143
                 48899999999***************************98.5..5567799*******************99887359988765 PP

  == domain 2    score: 32.9 bits;  conditional E-value: 4.3e-12
   TIGR00272 267 kLrrRyklveklrdagviGivvgtlgvdktreavnelrklikkagkkiYllavGkvnlvaklanfedidvfvllaCsessvidskefyrPivtpfelelaLseevtWaaD 376
                 ++r+    v+++  a   G+v+gtlg +   +++ +l++++++ag     +    v  + kla f ++  +v + C+  s+   + f  P+++p+e+e+aL     W a 
  MMETSP1137-20121227|3649_1 209 RMRQXADAVKRAAAASSWGLVLGTLGRQGNPDILFHLQQILRNAGVHFVTVLLSEVL-PSKLAEFPEVGAWVQVCCPRLSIDWGHAFGAPLLSPYEAEVALGA-RQWLAQ 316
                 5677778899***********************************865555566665.7*********************98899999*************75.456554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (445 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        86  (0.0209654); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.37u 0.13s 00:00:00.50 Elapsed: 00:00:00.50
# Mc/sec: 1174.70
//
Query:       MMETSP1137-20121227|3650_1  [L=485]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (485 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        79  (0.0192589); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.16s 00:00:00.48 Elapsed: 00:00:00.43
# Mc/sec: 1488.71
//
Query:       MMETSP1137-20121227|3651_1  [L=999]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.5e-10   36.7   8.9    8.5e-10   36.7   6.2    3.0  3  TIGR00880 2_A_01_02: multidrug resistance protein
    2.9e-07   28.1   6.1    2.9e-07   28.1   4.2    1.9  2  TIGR00710 efflux_Bcr_CflA: drug resistance transporter, Bcr/CflA subfamily
      6e-07   26.5  13.3    9.9e-06   22.5   2.3    2.2  2  TIGR00895 2A0115: MFS transporter, aromatic acid:H+ symporter (AAHS) family
    0.00027   17.7   1.8     0.0012   15.6   0.9    2.0  2  TIGR00898 2A0119: cation transport protein
      0.001   16.0   3.7      0.001   16.0   2.6    2.3  2  TIGR00881 2A0104: phosphoglycerate transporter family protein
  ------ inclusion threshold ------
      0.027   11.2  15.6       0.02   11.6   2.5    2.2  2  TIGR00893 2A0114: D-galactonate transporter
      0.038   10.3   1.1      0.073    9.4   0.8    1.4  1  TIGR00894 2A0114euk: Na(+)-dependent inorganic phosphate cotransporter


Domain annotation for each model (and alignments):
>> TIGR00880  2_A_01_02: multidrug resistance protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.1       3.3     2e+03      88     110 ..      27      49 ..      23      52 .. 0.81
   2 !   36.7   6.2   1.4e-12   8.5e-10       5     135 ..      65     200 ..      61     209 .. 0.85
   3 ?    0.7   5.9      0.19   1.1e+02      39     133 ..     791     890 ..     785     897 .. 0.73

  Alignments for each domain:
  == domain 1    score: -3.3 bits;  conditional E-value: 3.3
   TIGR00880  88 algllsagialgpilGpllGavl 110
                 ++g+++a +a  pil+p+  ++l
  MMETSP1137-20121227|3651_1  27 VVGTAVALQADVPILAPMCASLL 49 
                 68889999999999999987765 PP

  == domain 2    score: 36.7 bits;  conditional E-value: 1.4e-12
   TIGR00880   5 agyAlgqlvvsplsglltdrvGrkpvllvglfifvlsqllfalssnitvliiarilqGfgaaaalvagaaliadiikee...ersvalgllsagialgpilGpllGavla...qalgwralflilallallafilll 135
                 a++ lgq+v +  +g+l+d  Gr+p+l+ g+ +++l++++f l++++   + +r++ G+      va  a +ad++++     r++ +g+l+a+++++  l+ +l+++la      g + ++l++++ a l +++ +
  MMETSP1137-20121227|3651_1  65 ASFSLGQFVSGCWAGALSDVHGRRPLLISGTTVCALGTFAFGLVQSVHAAVGLRFMMGLLVQNQAVAK-AALADMSQDAppaRRAALYGMLAACFSAARALSTALTGLLAssrLIGGEKHPYLTAMAAASLPTFVAA 200
                 7899*******************************************************998777665.7778887654443899999**********************765556788899988888776655544 PP

  == domain 3    score: 0.7 bits;  conditional E-value: 0.19
   TIGR00880  39 vlsqllfals.snitvliiarilqGfgaaaalvagaaliadiikeeersvalgllsagialgpilGpllGavla....qalgwralflilallallafil 133
                 v++ +++ ls   +++l+++  l ++g    ++  ++l++  ++++  +v+ g++s++ +l   +Gp+l ++ +         + lfl++++  +l+f l
  MMETSP1137-20121227|3651_1 791 VAADMVTSLSaADMSLLLFSLSLLSVGFMSLMPCMNTLVSNCTPADSQGVIAGTVSSAGTLLRAMGPMLVGLSFsiavRLHALHRLFLAIGAAYALTFTL 890
                 555555555546788999999999999999***************************************9998854332222233444444444444433 PP

>> TIGR00710  efflux_Bcr_CflA: drug resistance transporter, Bcr/CflA subfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.1   4.2   4.9e-10   2.9e-07      33     148 ..      47     168 ..      29     177 .. 0.77
   2 ?   -4.6   2.3       4.3   2.5e+03     304     346 ..     816     855 ..     788     894 .. 0.51

  Alignments for each domain:
  == domain 1    score: 28.1 bits;  conditional E-value: 4.9e-10
   TIGR00710  33 kdlsvsasavqltltlyllglavgqLl....lGplsDsyGRkpvlLlgllvfalsslvlalsenietllvlRflqafgasaalVisqalvrDiya...keelskvysilmlllalaPllapli 148
                   l+ +a  v     +  + +++gq +     G lsD  GR+p l+ g++v al+  +  l+++++  + lRf+ ++ +   +V   al+ D+ +    ++   +y++l   +  a +l+  +
  MMETSP1137-20121227|3651_1  47 SLLELPAAEVGTFVGAIQASFSLGQFVsgcwAGALSDVHGRRPLLISGTTVCALGTFAFGLVQSVHAAVGLRFMMGLLVQNQAVAKAALA-DMSQdapPARRAALYGMLAACFSAARALSTAL 168
                 5567777778777888888888888862222579**********************************************9999988875.33331223455666777766666666666555 PP

  == domain 2    score: -4.6 bits;  conditional E-value: 4.3
   TIGR00710 304 iavailvgigvslvlsialalaLeefphvaGtasallgtlrlv 346
                 ++ + l+ + ++lv+  ++a   ++++ +aGt+s+    lr +
  MMETSP1137-20121227|3651_1 816 VGFMSLMPCMNTLVSNCTPA---DSQGVIAGTVSSAGTLLRAM 855
                 44444555544444444444...45555566655543333332 PP

>> TIGR00895  2A0115: MFS transporter, aromatic acid:H+ symporter (AAHS) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.5   2.3   1.7e-08   9.9e-06      55     166 ..      61     174 ..      12     251 .. 0.76
   2 !    9.3   1.6   0.00018       0.1      92     197 ..     791     899 ..     786     917 .. 0.80

  Alignments for each domain:
  == domain 1    score: 22.5 bits;  conditional E-value: 1.7e-08
   TIGR00895  55 GfllsagLiGmvlGallfgplaDrigRkrvllvsillfsvftlasalatnvtqLlvlRflaglGlGgllpnliaL..vsEyapkrfratvvglvavGyaiGaavggllaallip 166
                 G + ++  +G  + +   g+l+D  gR+++l+ ++ + +++t a +l ++v   + lRf+ gl +     +  aL  +s  ap  +ra + g++a+ +    a++++l++ll +
  MMETSP1137-20121227|3651_1  61 GAIQASFSLGQFVSGCWAGALSDVHGRRPLLISGTTVCALGTFAFGLVQSVHAAVGLRFMMGLLVQNQAVAKAALadMSQDAPPARRAALYGMLAACFSAARALSTALTGLLAS 174
                 34444444677777888899*******************************************9976555555553389*******************9999999999998876 PP

  == domain 2    score: 9.3 bits;  conditional E-value: 0.00018
   TIGR00895  92 fsvftlasalatnvtqLlvlRflaglGlGgllpnliaLvsEyapkrfratvvglvav.Gy...aiGaavggllaallipafgWrslflvggiiplllllllikvLpEsik 197
                 +++ ++ s  a ++  Ll+   l ++G  +l+p +++Lvs  +p+  ++ ++g+v + G    a+G ++ gl  ++ +  ++ + lfl  g ++  l   l  ++p s++
  MMETSP1137-20121227|3651_1 791 VAADMVTSLSAADMSLLLFSLSLLSVGFMSLMPCMNTLVSNCTPADSQGVIAGTVSSaGTllrAMGPMLVGLSFSIAVRLHALHRLFLAIG-AAYALTFTLSLWVPRSAQ 899
                 56667788888899889999999******************************997625422256777778777899999**999998655.566677788889998886 PP

>> TIGR00898  2A0119: cation transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.9     2e-06    0.0012     129     202 ..      61     134 ..      54     217 .. 0.79
   2 ?   -0.4   0.0      0.14        79     243     283 ..     875     915 ..     856     922 .. 0.88

  Alignments for each domain:
  == domain 1    score: 15.6 bits;  conditional E-value: 2e-06
   TIGR00898 129 kltqsvvfvGvLlGslvlGqlsDrfGRkkvLllstlvtavsgvltafspnytvflvlrlLvGvgiagivvvalv 202
                   +q+++ +G ++++   G lsD  GR+ +L+  t v a+ ++   +  +    + lr++ G+  +   v+   
  MMETSP1137-20121227|3651_1  61 GAIQASFSLGQFVSGCWAGALSDVHGRRPLLISGTTVCALGTFAFGLVQSVHAAVGLRFMMGLLVQNQAVAKAA 134
                 567999***************************99999999999999999999999999999988776666555 PP

  == domain 2    score: -0.4 bits;  conditional E-value: 0.14
   TIGR00898 243 wLlllvslPlvlflvlvwfvpESpRwlisqgrieeAlkiLk 283
                  L l++ +   l++ l+++vp S+    ++g+   A+++L+
  MMETSP1137-20121227|3651_1 875 RLFLAIGAAYALTFTLSLWVPRSAQRQPARGHKPGAVSSLR 915
                 5889999*****************99999999999999886 PP

>> TIGR00881  2A0104: phosphoglycerate transporter family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   2.6   1.7e-06     0.001      18     138 ..      42     168 ..      33     208 .. 0.75
   2 ?    1.0   1.8     0.065        38      82     152 ..     805     873 ..     788     905 .. 0.53

  Alignments for each domain:
  == domain 1    score: 16.0 bits;  conditional E-value: 1.7e-06
   TIGR00881  18 lpelqeeiglsktdlGlllsafsiaYgiskfvvgv....vsDrvsarvflaigLilvaivnlflgfssslwvliallalnGlf...qglgwppcgrlltkwfsrserGtvvaiwnishnvggallppl 138
                 +p   + + l ++++G  + a+ + + +++fv+g+    +sD  + r +l +g   +a+ +  +g ++s+ + + l+++ Gl+   q+++    +  + +  ++ +r+ + ++++     + al + l
  MMETSP1137-20121227|3651_1  42 APMCASLLELPAAEVGTFVGAIQASFSLGQFVSGCwagaLSDVHGRRPLLISGTTVCALGTFAFGLVQSVHAAVGLRFMMGLLvqnQAVAKAALA-DMSQDAPPARRAALYGMLAACFSAARALSTAL 168
                 5666667789999*******************864233389****************************************85333444444444.35556677777777777766666666665544 PP

  == domain 2    score: 1.0 bits;  conditional E-value: 0.065
   TIGR00881  82 slwvliallalnGlfqglgwppcgrlltkwfsrserGtvvaiwnishnvggallpplvllaialllswhvv 152
                 sl ++ + l+  G++    +p+ + l+ + ++    G + +  +++ ++  a+ p lv l++ + ++ h++
  MMETSP1137-20121227|3651_1 805 SLLLFSLSLLSVGFMS--LMPCMNTLVSNCTPADSQGVIAGTVSSAGTLLRAMGPMLVGLSFSIAVRLHAL 873
                 3322222222222222..23555555566666666666666666666666666666666666666655555 PP

>> TIGR00893  2A0114: D-galactonate transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   2.5   3.5e-05      0.02      25     142 ..      50     173 ..      36     221 .. 0.81
   2 ?    5.1   2.9    0.0034         2     300     369 ..     791     862 ..     786     893 .. 0.76

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 3.5e-05
   TIGR00893  25 glsaaqyglvf....safsigyvlfqlpggllldriGakktlavaivlWglftllqafatalvslivlRvllGla...EaplfPgiikivasWFPakeratavsifnsaqalgaiiggplvgwil 142
                  l+aa++g+ +    ++fs+g ++ +  +g+l d  G +  l     + +l t + ++++++ + + lR+++Gl     a++ ++ + +++   P+++ra+  ++  + ++ + ++ ++l g+++
  MMETSP1137-20121227|3651_1  50 ELPAAEVGTFVgaiqASFSLGQFVSGCWAGALSDVHGRRPLLISGTTVCALGTFAFGLVQSVHAAVGLRFMMGLLvqnQAVAKAALADMSQD-APPARRAALYGMLAACFSAARALSTALTGLLA 173
                 5566665555500005677777777777899*******************************************988788888888888766.6999********************99999754 PP

  == domain 2    score: 5.1 bits;  conditional E-value: 0.0034
   TIGR00893 300 sllliatnlvaski.aalalvalaffgkgl.aailwavisdvlskeiagltgGlinllGnlagivgPiviga 369
                 +++ ++t+l+a+++ + l +++l+ +g ++ + ++ +++s+  +  + g+  G+++++G l   +gP+++g 
  MMETSP1137-20121227|3651_1 791 VAADMVTSLSAADMsLLLFSLSLLSVGFMSlMPCMNTLVSNCTPADSQGVIAGTVSSAGTLLRAMGPMLVGL 862
                 44555555443322033334444444444459************************************9995 PP

>> TIGR00894  2A0114euk: Na(+)-dependent inorganic phosphate cotransporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   0.8   0.00012     0.073      79     195 ..      61     178 ..      57     198 .. 0.83

  Alignments for each domain:
  == domain 1    score: 9.4 bits;  conditional E-value: 0.00012
   TIGR00894  79 GlilssvfygslilqipvGylakkygtkkvigaalllssvlslliPiaaavgvalvivlRvlqGla..eglvspaqhellakWiPPkERsrlvsavlsGaqlGtlivlpisGlicesd.l 195
                 G+i +s+++g+++     G l++  g + ++ ++ ++  + ++    +  v +   + lR++ Gl   + +v+ a  + + + +PP  R+ l ++  + ++   +++  ++Gl++ s   
  MMETSP1137-20121227|3651_1  61 GAIQASFSLGQFVSGCWAGALSDVHGRRPLLISGTTVCALGTFAFGLVQSVHA--AVGLRFMMGLLvqNQAVAKAALADMSQDAPPARRAALYGMLAACFSAARALSTALTGLLASSRlI 178
                 999*******************************9999999998888765554..4678999997522445556666667899*******************************998753 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (999 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       133  (0.0324232); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.66u 0.16s 00:00:00.82 Elapsed: 00:00:00.79
# Mc/sec: 1669.08
//
Query:       MMETSP1137-20121227|3652_1  [L=149]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (149 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        53  (0.0129205); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.11s 00:00:00.28 Elapsed: 00:00:00.28
# Mc/sec: 678.15
//
Query:       MMETSP1137-20121227|3653_1  [L=197]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.2e-32  110.8   0.0    1.5e-32  110.5   0.0    1.0  1  TIGR02965 xanthine_xdhB: xanthine dehydrogenase, molybdopterin binding subunit
    7.3e-27   91.1   0.0      9e-27   90.8   0.0    1.0  1  TIGR02969 mam_aldehyde_ox: aldehyde oxidase
    3.9e-13   45.8   0.0    4.4e-13   45.6   0.0    1.0  1  TIGR03313 Se_sel_red_Mo: probable selenate reductase, molybdenum-binding subunit
    6.6e-12   42.4   0.0    7.8e-12   42.2   0.0    1.1  1  TIGR03196 pucD: xanthine dehydrogenase D subunit
      2e-11   40.9   0.0    2.3e-11   40.7   0.0    1.0  1  TIGR03194 4hydrxCoA_A: 4-hydroxybenzoyl-CoA reductase, alpha subunit
    1.5e-07   27.8   0.0    1.6e-07   27.7   0.0    1.0  1  TIGR02416 CO_dehy_Mo_lg: carbon-monoxide dehydrogenase, large subunit
    2.3e-05   20.5   0.0    2.4e-05   20.4   0.0    1.1  1  TIGR03311 Se_dep_Molyb_1: selenium-dependent molybdenum hydroxylase 1


Domain annotation for each model (and alignments):
>> TIGR02965  xanthine_xdhB: xanthine dehydrogenase, molybdopterin binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  110.5   0.0   2.5e-35   1.5e-32     566     728 ..      31     186 ..      25     193 .. 0.90

  Alignments for each domain:
  == domain 1    score: 110.5 bits;  conditional E-value: 2.5e-35
   TIGR02965 566 lvkkaylarvqlssaGfyktPkihwdrakgrGrpfyyfayGaavsevvvdtltGeykvlradilhdvGkslnpaidiGqveGafvqGmGWltteelvwdekGrlrthaPstykiPavsdrPkdfnvrlleaaenaed.tihrskavGePPlllglsvlsalkda 728
                  v++a  a ++l +aG+ + Pk          +pf y + G  + ev +d+ltGe  +lrad+l d G+ lnp id+GqveG+f+  +G+  tee++w ++ +    +   yk Pav d P  ++v++l ++ n     ++ ska  ePP+ lg +v  a++ a
  MMETSP1137-20121227|3653_1  31 AVAAAADAGISLHAAGWEQLPK-------DAAKPFGYATQGVGCVEVELDALTGEIAILRADVLMDQGTPLNPLIDLGQVEGGFIMALGYYLTEEVLWSKENKQINLGTWQYKPPAVHDIPIAMHVEFLAKTPNPSPvNVFGSKASAEPPMALG-AVRRAVQRA 186
                 5666777778888888887776.......4578**********************************************************************************************999999987637*************99.577777776 PP

>> TIGR02969  mam_aldehyde_ox: aldehyde oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.8   0.0   1.5e-29     9e-27    1113    1269 ..      27     178 ..      23     192 .. 0.89

  Alignments for each domain:
  == domain 1    score: 90.8 bits;  conditional E-value: 1.5e-29
   TIGR02969 1113 twkdwaqtafdksislsavgyfrgyesninwekgeghpfeyfvygaacseveidcltgdhknirtdivmdvgysinpaldigqvegafiqgmglytieelsyspqgilysrgpnqykipaicdiptelhiallp..pseksntlysskglgesgvflgc 1269
                   wk    +a d  isl a+g+        +  k   +pf y   g  c eve+d+ltg+   +r+d++md g+ +np +d+gqveg fi  +g y  ee+ +s +    + g  qyk pa+ dip  +h+ +l   p      ++ sk   e  + lg+
  MMETSP1137-20121227|3653_1   27 GWKSAVAAAADAGISLHAAGWE-------QLPKDAAKPFGYATQGVGCVEVELDALTGEIAILRADVLMDQGTPLNPLIDLGQVEGGFIMALGYYLTEEVLWSKENKQINLGTWQYKPPAVHDIPIAMHVEFLAktPNPSPVNVFGSKASAEPPMALGA 178 
                  5999999999999999999874.......4678899*************************************************************************************************72244445578889988888877774 PP

>> TIGR03313  Se_sel_red_Mo: probable selenate reductase, molybdenum-binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.6   0.0   7.5e-16   4.4e-13     808     932 ..      63     188 ..      21     194 .. 0.83

  Alignments for each domain:
  == domain 1    score: 45.6 bits;  conditional E-value: 7.5e-16
   TIGR03313 808 yganfaevavntrtgeirldkfyalldcgtpvnpelalgqiygatlraighslteeivyddegipltrdlksygapkigdiprdfra.vl..vpsddkvgpygaksiseigvngaapaiataihdacg 932
                  g    ev +++ tgei + +   l+d gtp+np + lgq+ g  + a+g+ ltee+++ +e + +      y  p + dip  ++  +l   p   +v  +g+k+ +e  +  a  a+  a++ ac 
  MMETSP1137-20121227|3653_1  63 QGVGCVEVELDALTGEIAILRADVLMDQGTPLNPLIDLGQVEGGFIMALGYYLTEEVLWSKENKQINLGTWQYKPPAVHDIPIAMHVeFLakTPNPSPVNVFGSKASAEPPM--ALGAVRRAVQRACL 188
                 35677899**************************************************************************9887624422588899*******9998654..55667777777775 PP

>> TIGR03196  pucD: xanthine dehydrogenase D subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.2   0.0   1.3e-14   7.8e-12     619     725 ..      63     174 ..      35     190 .. 0.82

  Alignments for each domain:
  == domain 1    score: 42.2 bits;  conditional E-value: 1.3e-14
   TIGR03196 619 aaaaavvvevdldlGlvklvdmelaidaGtvlsplalrGqveGGaaqalGlalmeelkt.vdGvvvaetlddyllptikdvp...dldlvave.dlqkddvyGvkGvGeigt 725
                  +   v+ve+d ++G++ ++  +  +d Gt l+pl   GqveGG  +alG+ l ee+    + + ++    +y  p+++d+p    ++++a + ++ + +v+G k   e + 
  MMETSP1137-20121227|3653_1  63 QGVGCVEVELDALTGEIAILRADVLMDQGTPLNPLIDLGQVEGGFIMALGYYLTEEVLWsKENKQINLGTWQYKPPAVHDIPiamHVEFLAKTpNPSPVNVFGSKASAEPPM 174
                 456789**************************************************875157889999999***********654567888654788899999998887653 PP

>> TIGR03194  4hydrxCoA_A: 4-hydroxybenzoyl-CoA reductase, alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.7   0.0     4e-14   2.3e-11     603     731 ..      56     190 ..      52     197 .] 0.82

  Alignments for each domain:
  == domain 1    score: 40.7 bits;  conditional E-value: 4e-14
   TIGR03194 603 mgfsyaaq...vvevsvdeetGkvtvekvwaaldcGkainPlaveGqvqGavymGmGqalseetvydd.GrikaaelldyrlptivesP.dieveivesl...dPnGPfGakeaseGalagvlsalanavadavGvr 731
                   f ya+q    vev +d  tG++++ +  + +d G  +nPl   Gqv+G+  m +G  l+ee+++ +  ++ +    +y+ p++ + P  ++ve +       P   fG k  +e ++a  l+a+  av+ a  v 
  MMETSP1137-20121227|3653_1  56 KPFGYATQgvgCVEVELDALTGEIAILRADVLMDQGTPLNPLIDLGQVEGGFIMALGYYLTEEVLWSKeNKQINLGTWQYKPPAVHDIPiAMHVEFLAKTpnpSPVNVFGSKASAEPPMA--LGAVRRAVQRACLVT 190
                 5688998854458*****************************************************876888899999***999988883345555543322256788****99999886..788888888887665 PP

>> TIGR02416  CO_dehy_Mo_lg: carbon-monoxide dehydrogenase, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.7   0.0   2.8e-10   1.6e-07     631     736 ..      65     175 ..      28     194 .. 0.80

  Alignments for each domain:
  == domain 1    score: 27.7 bits;  conditional E-value: 2.8e-10
   TIGR02416 631 ylcv.vdidvdtgvvkvrrfyalddcgtrinpmiiegqihggltegiavalgqeiafdeqgnvlgaslmdyllptavetp...kfe.tdytvtpsphhpigakgvgesahv 736
                   cv v++d+ tg++ + r   l d gt +np+i  gq+ gg++ +++  l++e+ + ++ + +     +y  p+  ++p   + e    t  psp    g+k  +e +  
  MMETSP1137-20121227|3653_1  65 VGCVeVELDALTGEIAILRADVLMDQGTPLNPLIDLGQVEGGFIMALGYYLTEEVLWSKENKQINLGTWQYKPPAVHDIPiamHVEfLAKTPNPSPVNVFGSKASAEPPMA 175
                 3365599***************************************************999999999999998888888854444523578899**********9998863 PP

>> TIGR03311  Se_dep_Molyb_1: selenium-dependent molybdenum hydroxylase 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   0.0   4.2e-08   2.4e-05     711     782 ..      59     133 ..      43     171 .. 0.71

  Alignments for each domain:
  == domain 1    score: 20.4 bits;  conditional E-value: 4.2e-08
   TIGR03311 711 shvaygyatqvvildd.kGkvekvva..aydvGrainplnleGqieGGivmGlGyaltedfpleesipkakfgtl 782
                  +++ g  +  v ld   G ++ + a    d G  +npl   Gq+eGG +m lGy lte+   ++   + ++gt 
  MMETSP1137-20121227|3653_1  59 GYATQGVGCVEVELDAlTGEIAILRAdvLMDQGTPLNPLIDLGQVEGGFIMALGYYLTEEVLWSKENKQINLGTW 133
                 333333333334455435666655541157999**************************9988877777777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (197 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        94  (0.0229157); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.29u 0.16s 00:00:00.44 Elapsed: 00:00:00.64
# Mc/sec: 406.28
//
Query:       MMETSP1137-20121227|3654_1  [L=211]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (211 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        81  (0.0197465); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.14s 00:00:00.33 Elapsed: 00:00:00.56
# Mc/sec: 488.59
//
Query:       MMETSP1137-20121227|3655_1  [L=84]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.26    8.1   4.6       0.27    8.0   3.2    1.0  1  TIGR00414 serS: serine--tRNA ligase


Domain annotation for each model (and alignments):
>> TIGR00414  serS: serine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   3.2   6.6e-05      0.27      30      97 ..       2      74 ..       1      83 [. 0.65

  Alignments for each domain:
  == domain 1    score: 8.0 bits;  conditional E-value: 6.6e-05
   TIGR00414 30 eklselddklkkllskieelq...kkrnelskeigkkkaekkdk.iee.lkkelkelkeeleeleaelkelee 97
                e+ls+l++ +++ll+ki  l    + ++++++ei+++++++ +   e+ + + l ++++el+++ ++++el++
  MMETSP1137-20121227|3655_1  2 ERLSALAATQRALLEKIAALDeqeASEQARIEEIDNEDGQEDQAsGEQdVLAMLMHKQQELQRMRSAISELQQ 74
                5667777777777777777762114444555566666655555434436999999999*****9999987765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (84 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       247  (0.0602145); expected 82.0 (0.02)
Passed bias filter:                      147  (0.0358362); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.40
# Mc/sec: 277.18
//
Query:       MMETSP1137-20121227|3656_1  [L=57]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        43  (0.0104827); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.16s 00:00:00.27 Elapsed: 00:00:00.23
# Mc/sec: 327.10
//
Query:       MMETSP1137-20121227|3657_1  [L=331]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (331 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        75  (0.0182838); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.18s 00:00:00.45 Elapsed: 00:00:00.47
# Mc/sec: 929.54
//
Query:       MMETSP1137-20121227|3658_1  [L=41]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (41 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        22  (0.00536324); expected 82.0 (0.02)
Passed bias filter:                       20  (0.00487567); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.11s 00:00:00.22 Elapsed: 00:00:00.25
# Mc/sec: 216.46
//
Query:       MMETSP1137-20121227|3659_1  [L=193]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.11   10.0   3.4      0.049   11.2   0.6    1.6  2  TIGR00624 tag: DNA-3-methyladenine glycosylase I


Domain annotation for each model (and alignments):
>> TIGR00624  tag: DNA-3-methyladenine glycosylase I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0     0.082   3.3e+02      95     116 ..      60      81 ..      25     116 .. 0.58
   2 ?   11.2   0.6   1.2e-05     0.049      54     110 ..     131     187 ..     121     192 .. 0.84

  Alignments for each domain:
  == domain 1    score: -1.3 bits;  conditional E-value: 0.082
   TIGR00624  95 ianaraalelesedlvellwsf 116
                 i+ ++a+ ++ + +l+++   f
  MMETSP1137-20121227|3659_1  60 IEASKAIQAMFETQLSNMQADF 81 
                 3334444444444455444444 PP

  == domain 2    score: 11.2 bits;  conditional E-value: 1.2e-05
   TIGR00624  54 nyrrafsqfdiekvaryt.dadverlllddgivrnrakieatianaraalelesedlv 110
                 ++ + ++qf++ekv+r++ +a+  + + d+ + r + k+ a ++   aa+ l ++d+ 
  MMETSP1137-20121227|3659_1 131 KFAEHVKQFEVEKVTRLQrEAQTLKRVGDE-VFRVQQKVTAERTAREAAIVLMKDDFM 187
                 6888999*********98245566677787.*************99999999999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (193 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       423  (0.10312); expected 82.0 (0.02)
Passed bias filter:                      133  (0.0324232); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.21u 0.17s 00:00:00.38 Elapsed: 00:00:00.36
# Mc/sec: 707.61
//
Query:       MMETSP1137-20121227|3660_1  [L=71]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (71 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        60  (0.014627); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.47
# Mc/sec: 199.39
//
Query:       MMETSP1137-20121227|3661_1  [L=161]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.4e-09   34.3   0.0    7.8e-09   33.8   0.0    1.3  1  TIGR01410 tatB: twin arginine-targeting protein translocase TatB
    5.4e-09   33.4   0.7    5.4e-09   33.4   0.5    1.8  2  TIGR01411 tatAE: twin arginine-targeting protein translocase, TatA/E family


Domain annotation for each model (and alignments):
>> TIGR01410  tatB: twin arginine-targeting protein translocase TatB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.8   0.0   3.8e-12   7.8e-09       1      61 [.      81     142 ..      81     160 .. 0.87

  Alignments for each domain:
  == domain 1    score: 33.8 bits;  conditional E-value: 3.8e-12
   TIGR01410   1 fdiGfsELlviavValvvlGPerLPkairavgklvralrklasdvkneldeelk.leelkee 61 
                 f++G+ EL +i v+al + GPe+L + ++  gk  + l+++ +++ + + e  k ++elk  
  MMETSP1137-20121227|3661_1  81 FGLGWAELGIIGVIALFIFGPEKLAPFAKELGKSAGSLKEVTDSFSEGMSEGTKkVDELKSA 142
                 789**********************************************9988768888865 PP

>> TIGR01411  tatAE: twin arginine-targeting protein translocase, TatA/E family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.4   0.5   2.7e-12   5.4e-09       1      41 [.      82     122 ..      82     128 .. 0.92
   2 ?   -1.6   0.0      0.22   4.5e+02      19      26 ..     132     139 ..     132     142 .. 0.82

  Alignments for each domain:
  == domain 1    score: 33.4 bits;  conditional E-value: 2.7e-12
   TIGR01411   1 glsatelliilvvilLlFGakKLpelgrdlGkaikeFKkal 41 
                 gl++ el ii v++l +FG+ KL+ +++ lGk+ ++ K+ +
  MMETSP1137-20121227|3661_1  82 GLGWAELGIIGVIALFIFGPEKLAPFAKELGKSAGSLKEVT 122
                 699*********************************99865 PP

  == domain 2    score: -1.6 bits;  conditional E-value: 0.22
   TIGR01411  19 GakKLpel 26 
                 G+kK+ el
  MMETSP1137-20121227|3661_1 132 GTKKVDEL 139
                 99**9998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (161 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       134  (0.032667); expected 82.0 (0.02)
Passed bias filter:                      108  (0.0263286); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.16u 0.16s 00:00:00.32 Elapsed: 00:00:00.30
# Mc/sec: 708.34
//
Query:       MMETSP1137-20121227|3662_1  [L=228]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (228 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        50  (0.0121892); expected 82.0 (0.02)
Passed bias filter:                       42  (0.0102389); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.13s 00:00:00.30 Elapsed: 00:00:01.04
# Mc/sec: 289.36
//
Query:       MMETSP1137-20121227|3663_1  [L=106]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (106 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       106  (0.0258411); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.15s 00:00:00.28 Elapsed: 00:00:00.47
# Mc/sec: 297.68
//
Query:       MMETSP1137-20121227|3664_1  [L=637]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.7e-05   18.6  52.5    6.7e-05   18.6  36.4    2.1  2  TIGR02168 SMC_prok_B: chromosome segregation protein SMC
  ------ inclusion threshold ------
       0.82    5.0  66.9      0.021   10.3  15.0    2.6  3  TIGR02169 SMC_prok_A: chromosome segregation protein SMC


Domain annotation for each model (and alignments):
>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6  36.4   3.3e-08   6.7e-05     205     555 ..       7     363 ..       1     447 [. 0.72
   2 ?   -4.0  13.2      0.22   4.4e+02     681     747 ..     285     348 ..     268     550 .. 0.49

  Alignments for each domain:
  == domain 1    score: 18.6 bits;  conditional E-value: 3.3e-08
   TIGR02168 205 LerQaekAekyk....elkeelrelelallvlrleelkeeleeleeelkeaeeeleeleaelkeleeeleelrlekseleeel...eelqkelqelkaeisrleqeieilkerleqlekeleeleeqleeleskkeeleeelaeleeeleelkeelesleaeleeaeaeleelesrleeleeeleelrsevaeleeqlaslnaelerleaeleqleerrerlkqe......ieelekkleeaeaelkelqeeleeleeeleeleeelerleealeeleeeleeaeqalqkaeeelaqlqarlesleslqenleglsegvkallknksklagilgvlselieveekyeaAieaalgerlqavvve 555
                 L++Q e+ ek+k    +lkeel + +++  + +  ++++++++l+++ + +++++e+++++++el+++++ + +++ e ++++   ++ +++ q+++++i+ le+++ ++ ++ +++ +++++l e++++l++++    +  ++le+el++ k+e++++ +  ++a +++ ++++++ +l+++++++++e+ +  ++l +  ++ +++++ +++  e+++ ++q+        +  +k++  e++++++q+   +    ++el +++ ++e +   l + ++e++++ +k+ee++++l+++++  + +  n ++  +++ + l+ + +      + ++  + e+kyeaA+++al+  +q++  +
  MMETSP1137-20121227|3664_1   7 LRKQRETIEKLKndnlQLKEELASERKHAKLFDSVSAQAQIAKLQDAGDTYTKKIEQEKRRIEELDKQMDIMHKKIWEQRKKMggvNASRENSQAITKQIHVLENRLDKALKKYNEALAQNKKLRENIDNLRRERLVFDQIYKKLEKELADKKKEMARIIDISNRAYEARDNAQAEMVALKTQADKEQAEFESEWKELGTMIEQDRKMKDFMKKEREKLSMQEQRgegqgvDPSSIEKVQSYEEAFAKIQAA--TGISDIDELVTTFINAEDQNFALFNYVNELNTECEKLEEQISELKSEIDKYKGQGLNTDNQRKKILKDLEDRLQR-----TEAKAAQYEKKYEAAMKNALKVGIQSIFNK 363
                 788888888887333358899999999999999999999999999999999999999999999999999999999999998862225667788899999999999999999999999999999999999999999888888888888888888887776555444444444444444444444444444444444443333333333333333333333333333000000333345555566666666554..44566899999999999999999***************************9999999999776555555555554.....4489999***************99998766 PP

  == domain 2    score: -4.0 bits;  conditional E-value: 0.22
   TIGR02168 681 ieeleeeieeleekiaelekelkelekeleeleeeleklrkeleelerklselkkelerlekeveql 747
                 ++el++e+e+lee+i+el+ e+++++ +  + +++++k+ k+le+    l+++++++++ ek+ e++
  MMETSP1137-20121227|3664_1 285 VNELNTECEKLEEQISELKSEIDKYKGQGLNTDNQRKKILKDLEDR---LQRTEAKAAQYEKKYEAA 348
                 3344444444444444444444444444444443333333333332...222222222222221111 PP

>> TIGR02169  SMC_prok_A: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7  28.8   3.1e-05     0.063     205     421 ..       8     234 ..       2     263 .. 0.57
   2 ?   10.3  15.0     1e-05     0.021     263     513 ..     167     423 ..     164     433 .. 0.73
   3 ?   -4.5   2.2       0.3   6.2e+02     485     503 ..     487     505 ..     449     532 .. 0.46

  Alignments for each domain:
  == domain 1    score: 8.7 bits;  conditional E-value: 3.1e-05
   TIGR02169 205 ekerekaerYk....eLkkekreleltlllkelealekqkekiekelaeleeelekleeeieelekeleeiekkleelnkkie..klgeeeqlavkekleelkaeiekleraiaekeeeledaeerlakaeaeidklkeeieelereieeekkereklkeelkelkeeleelraeleevdkeaaelreelkelkekl....eklkeelnelkreldrlleelkrlee 421
                 +k re+ e+ k    +Lk+e+   +  ++l    ++++q++k++   ++ ++++e+ +++ieel k++  ++kk+ e  kk+   + + e++ a++++++ l+  + k+ ++ +e+  + +++ e++ ++  e+   ++  ++le+e++++kke +++ +  + + e +++ +ae+ +++++a++ ++e++++ ++l    e+ ++ ++ +k+e+++l  + +r e 
  MMETSP1137-20121227|3664_1   8 RKQRETIEKLKndnlQLKEELASERKHAKLFDSVSAQAQIAKLQDAGDTYTKKIEQEKRRIEELDKQMDIMHKKIWEQRKKMGgvNASRENSQAITKQIHVLENRLDKALKKYNEALAQNKKLRENIDNLRRERLVFDQIYKKLEKELADKKKEMARIIDISNRAYEARDNAQAEMVALKTQADKEQAEFESEWKELgtmiEQDRKMKDFMKKEREKLSMQEQRGEG 234
                 33333333222111135566666666666666667777777777777777777777777777777777777777777777764223466667777777777777777777777777777777777777777777777777777777777777777777666665555555555555554444444444444444444000044333344444444444444444333 PP

  == domain 2    score: 10.3 bits;  conditional E-value: 1e-05
   TIGR02169 263 elekeleeiekkleelnkkieklgeeeqlavkekleelkaeiekleraiaekeeeledaeerlakae......aeidklkeeieelereieeek.kereklkeelkelkeeleelraeleevdkeaaelreelkelkekleklkeelnelkreldrlleelkrleeelaelkaelerieekiae.leeeleelaeei.kkaeqkleqlkedlekaekelrklkeeleklekelselerelaeleaqakaseeesreskav 513
                 ++ ++  e++++ ++    ++ +++ eq+++ ++ +el   ie+ ++  ++ ++e e++  ++++ e      + i+k+++  e++++ +++    + ++l + + +++++  +l++ ++e+++e ++l e+ +elk +++k+k +  +  +++++    lk le +l++ +a+ ++ e+k ++ ++++l+   + i +k   +   + + l ++    r+  + l  +e++ +e  + +a+++aqa+ s  e ++++a+
  MMETSP1137-20121227|3664_1 167 DISNRAYEARDNAQAEMVALKTQADKEQAEFESEWKELGTMIEQDRKMKDFMKKEREKLSMQEQRGEgqgvdpSSIEKVQSYEEAFAKIQAATGiSDIDELVTTFINAEDQNFALFNYVNELNTECEKLEEQISELKSEIDKYKGQGLNTDNQRKK---ILKDLEDRLQRTEAKAAQYEKKYEAaMKNALKVGIQSIfNKIGCNTPANMDLLGNEGVTERNMMQYLGIIEQRTNEILQLYAAAQAQARESAGEAQNGSAT 423
                 556666777777777777888999999999999999999999999999988888888877777665522333356788888777777765555414678999999999999999999999999999999999999999999999876666533333...57777888888888888887776541455555544555145555666777777788888888888899999999999999999999998887777666665 PP

  == domain 3    score: -4.5 bits;  conditional E-value: 0.3
   TIGR02169 485 elselerelaeleaqakas 503
                 e +e+++e+++++a ++ +
  MMETSP1137-20121227|3664_1 487 ENKEKKKEIKRKKAAERKL 505
                 1111111222221111111 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (637 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       604  (0.147245); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.73u 0.24s 00:00:00.97 Elapsed: 00:00:00.87
# Mc/sec: 966.40
//
Query:       MMETSP1137-20121227|3665_1  [L=214]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      0.007   14.0   1.6     0.0093   13.6   1.1    1.1  1  TIGR02158 PA_CoA_Oxy3: phenylacetate-CoA oxygenase, PaaI subunit


Domain annotation for each model (and alignments):
>> TIGR02158  PA_CoA_Oxy3: phenylacetate-CoA oxygenase, PaaI subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   1.1   2.3e-06    0.0093     115     209 ..      64     159 ..      43     176 .. 0.76

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 2.3e-06
   TIGR02158 115 alkEakyHlqhaktWlvrLgq..gteeskrrlqealdelWlyvaelfeaeekdeelveagiavdeatlkaawekevvavle.eatlelpketfarssg 209
                  l+E++  ++      +rL+q  + ++s++  +ea+ ++ ++ a ++ +++   +l ++++  ++++l+ awe +v+ ++  + + e++++    s +
  MMETSP1137-20121227|3665_1  64 MLREQQRIAHDRDMRRLRLKQieSAAKSEKAFEEAVARVDRESATFIPKVTEYLQLRQEDVRRKQSSLHRAWETNVFDKISqQISAEVERRAQ--SGE 159
                 5666654333333334455432289999****************************************************9899999999843..333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (214 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       147  (0.0358362); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.20u 0.16s 00:00:00.36 Elapsed: 00:00:00.39
# Mc/sec: 724.25
//
Query:       MMETSP1137-20121227|3666_1  [L=315]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (315 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        90  (0.0219405); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.16s 00:00:00.40 Elapsed: 00:00:00.45
# Mc/sec: 923.92
//
Query:       MMETSP1137-20121227|3667_1  [L=201]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.034   10.5   6.6      0.038   10.3   4.6    1.1  1  TIGR03319 YmdA_YtgF: conserved hypothetical protein YmdA/YtgF


Domain annotation for each model (and alignments):
>> TIGR03319  YmdA_YtgF: conserved hypothetical protein YmdA/YtgF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   4.6   9.3e-06     0.038      70     168 ..       5     100 ..       2     146 .. 0.84

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 9.3e-06
   TIGR03319  70 elkerrkelqklekrlkqkeekldrkkeklekkeeelekkekeleekekeleekeeeleellkeqkeeLekisgltqeeAkellleeveeelkeeaakl 168
                 e+  ++++++ l++++ +++ +l + + kl+k  +e ++  + l+++ ++le+++++++  +++++e+Le   g+ +++   +ll+e+e+++++ +a+ 
  MMETSP1137-20121227|3667_1   5 EMLMQEAQVEILQRKVYEHHYELIELQ-KLTKARSESCEVPEMLSARISSLEKQQQQCQCAIQKKREKLEAAKGMFNKN--MCLLTEIEASSRKSSARS 100
                 555677888999999999999998877.78888888888999********************************98775..689999999988887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (201 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       221  (0.0538762); expected 82.0 (0.02)
Passed bias filter:                      140  (0.0341297); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.23u 0.17s 00:00:00.40 Elapsed: 00:00:00.46
# Mc/sec: 576.73
//
Query:       MMETSP1137-20121227|3668_1  [L=95]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (95 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        33  (0.00804486); expected 82.0 (0.02)
Passed bias filter:                       33  (0.00804486); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.18s 00:00:00.32 Elapsed: 00:00:00.30
# Mc/sec: 417.97
//
Query:       MMETSP1137-20121227|3669_1  [L=215]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (215 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        60  (0.014627); expected 82.0 (0.02)
Passed bias filter:                       40  (0.00975134); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.13s 00:00:00.31 Elapsed: 00:00:00.49
# Mc/sec: 579.14
//
Query:       MMETSP1137-20121227|3670_1  [L=1410]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   2.4e-239  795.3  17.9     1e-125  418.7   1.4    7.8  5  TIGR00957 MRP_assoc_pro: multi drug resistance-associated protein (MRP)
   7.6e-124  412.5   0.2    2.6e-50  168.8   0.0    5.2  5  TIGR01271 CFTR_protein: cystic fibrosis transmembrane conductor regulator (CFTR)
    8.2e-65  217.2  20.9    1.6e-28   97.3   1.2    5.7  5  TIGR02203 MsbA_lipidA: lipid A export permease/ATP-binding protein MsbA
    3.1e-61  205.4   6.4    2.5e-28   96.6   0.2    5.6  5  TIGR00958 3a01208: antigen peptide transporter 2
    2.8e-60  202.4  21.4    1.7e-29  100.7   1.0    5.5  5  TIGR03797 NHLM_micro_ABC2: NHLM bacteriocin system ABC transporter, ATP-binding protein
    3.6e-57  192.1  27.8    1.3e-27   94.6   1.3    5.5  5  TIGR02204 MsbA_rel: ABC transporter, permease/ATP-binding protein
    4.3e-57  191.7  10.8    3.2e-31  106.2   0.2    5.6  5  TIGR01846 type_I_sec_HlyB: type I secretion system ATPase
    3.3e-54  182.1  18.0    5.8e-33  111.8   0.5    5.5  5  TIGR03796 NHLM_micro_ABC1: NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein
      2e-53  179.5  10.5    2.7e-24   83.3   0.2    5.5  5  TIGR03375 type_I_sec_LssB: type I secretion system ATPase
    1.9e-51  173.4   8.2    1.3e-32  111.3   0.1    4.4  3  TIGR02857 CydD: thiol reductant ABC exporter, CydD subunit
      2e-49  166.5  37.2    1.4e-29  101.0   0.4    5.4  5  TIGR02868 CydC: thiol reductant ABC exporter, CydC subunit
      8e-43  144.7   0.0    8.5e-21   71.9   0.0    3.6  3  TIGR01193 bacteriocin_ABC: ABC-type bacteriocin transporter
    2.3e-42  143.1  11.9    9.4e-22   75.0   0.2    3.8  3  TIGR01842 type_I_sec_PrtD: type I secretion system ATPase
    4.1e-39  132.5   9.9    7.8e-22   75.4   0.2    4.1  3  TIGR01192 chvA: glucan exporter ATP-binding protein
    1.8e-33  113.8   0.0    7.4e-17   59.3   0.1    3.2  3  TIGR00972 3a0107s01c2: phosphate ABC transporter, ATP-binding protein
    1.1e-30  104.9   1.2    1.4e-12   45.3   0.0    3.2  3  TIGR03265 PhnT2: putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein
    3.6e-28   96.4   7.5    1.6e-15   54.8   1.0    3.2  2  TIGR03258 PhnT: 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT
    4.6e-27   92.8   4.9    4.8e-13   46.9   0.4    3.4  3  TIGR03864 PQQ_ABC_ATP: ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system
    6.2e-27   92.5   1.8      5e-11   40.4   0.0    3.3  3  TIGR00968 3a0106s01: sulfate ABC transporter, ATP-binding protein
    4.5e-26   89.7   2.1    1.9e-10   38.3   0.0    3.3  3  TIGR02142 modC_ABC: molybdate ABC transporter, ATP-binding protein
    5.7e-26   89.2   0.2    1.3e-11   42.2   0.1    3.3  2  TIGR03410 urea_trans_UrtE: urea ABC transporter, ATP-binding protein UrtE
    3.4e-24   83.4   0.9    1.6e-08   32.1   0.1    3.4  3  TIGR02315 ABC_phnC: phosphonate ABC transporter, ATP-binding protein
    1.6e-23   81.1   6.9    2.4e-12   44.4   0.2    2.6  3  TIGR01187 potA: polyamine ABC transporter, ATP-binding protein
    3.3e-23   80.3   0.2    1.3e-10   38.9   0.0    3.2  3  TIGR01188 drrA: daunorubicin resistance ABC transporter, ATP-binding protein
    2.1e-22   77.6   0.8    4.1e-10   37.1   0.0    3.2  3  TIGR01186 proV: glycine betaine/L-proline transport ATP binding subunit
    2.2e-22   77.6   1.3    1.8e-08   32.1   0.0    3.4  3  TIGR01277 thiQ: thiamine ABC transporter, ATP-binding protein
    4.3e-22   76.8   2.4      3e-08   31.5   0.3    3.4  3  TIGR03771 anch_rpt_ABC: anchored repeat-type ABC transporter, ATP-binding subunit
    5.6e-22   76.2   5.6    8.8e-11   39.6   0.8    3.3  3  TIGR02982 heterocyst_DevA: ABC exporter ATP-binding subunit, DevA family
    6.9e-22   75.7   0.4    6.8e-11   39.7   0.1    3.5  3  TIGR03005 ectoine_ehuA: ectoine/hydroxyectoine ABC transporter, ATP-binding protein EhuA
    1.3e-21   75.0   4.9    1.2e-12   45.7   0.2    3.3  2  TIGR01189 ccmA: heme ABC exporter, ATP-binding protein CcmA
    8.4e-21   72.3   1.4      5e-08   30.6   0.2    3.4  3  TIGR02211 LolD_lipo_ex: lipoprotein releasing system, ATP-binding protein
    3.3e-20   70.2   0.5    6.8e-12   42.9   0.0    3.2  3  TIGR02314 ABC_MetN: D-methionine ABC transporter, ATP-binding protein
    3.9e-20   70.2   3.3    1.5e-10   38.8   0.1    3.4  3  TIGR02769 nickel_nikE: nickel import ATP-binding protein NikE
    7.5e-20   69.1   0.6    4.1e-07   27.5   0.1    3.2  3  TIGR03608 L_ocin_972_ABC: putative bacteriocin export ABC transporter, lactococcin 972 group
    2.1e-19   67.5   1.3    7.7e-06   23.3   0.0    3.5  3  TIGR01166 cbiO: cobalt ABC transporter, ATP-binding protein
    3.5e-19   67.2   2.0    5.9e-07   27.2   0.2    3.3  3  TIGR02673 FtsE: cell division ATP-binding protein FtsE
    8.2e-19   65.7   7.2    3.1e-08   31.0   0.7    3.5  3  TIGR03873 F420-0_ABC_ATP: proposed F420-0 ABC transporter, ATP-binding protein
    9.3e-19   65.5   1.6    4.6e-10   37.1   0.1    3.3  3  TIGR02770 nickel_nikD: nickel import ATP-binding protein NikD
    2.7e-18   64.1   0.4    2.9e-06   24.7   0.0    3.6  3  TIGR02324 CP_lyasePhnL: phosphonate C-P lyase system protein PhnL
    2.9e-18   64.1   1.6    1.1e-07   29.5   0.1    3.3  3  TIGR01184 ntrCD: nitrate ABC transporter, ATP-binding proteins C and D
    3.4e-18   64.0   2.2    2.3e-07   28.6   0.2    3.3  3  TIGR00960 3a0501s02: type II secretory pathway family protein
    2.1e-17   60.8   0.1    5.2e-11   39.6   0.0    2.4  2  TIGR00955 3a01204: pigment precursor permease
    3.6e-17   60.2   3.4    3.1e-07   27.5   0.0    3.2  3  TIGR03415 ABC_choXWV_ATP: choline ABC transporter, ATP-binding protein
    2.3e-14   51.5   0.0    3.3e-07   28.0   0.0    3.4  3  TIGR03411 urea_trans_UrtD: urea ABC transporter, ATP-binding protein UrtD
    2.4e-14   50.6   0.6    8.6e-07   25.7   0.1    3.1  3  TIGR03269 met_CoM_red_A2: methyl coenzyme M reductase system, component A2
    3.5e-14   50.8   0.0    2.8e-06   24.8   0.0    3.1  2  TIGR03522 GldA_ABC_ATP: gliding motility-associated ABC transporter ATP-binding subunit GldA
    4.5e-14   49.6   1.1    3.9e-07   26.7   0.0    3.1  3  TIGR02633 xylG: D-xylose ABC transporter, ATP-binding protein
    5.9e-13   46.1   0.2    2.2e-05   21.1   0.1    3.1  3  TIGR03719 ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family
    1.1e-12   45.0   0.0    3.4e-06   23.6   0.0    2.2  2  TIGR00954 3a01203: peroxysomal long chain fatty acyl transporter
      2e-12   44.6   2.7    9.8e-07   25.9   0.1    3.2  3  TIGR01288 nodI: nodulation ABC transporter NodI
    1.6e-11   42.0   0.3    1.9e-07   28.7   0.0    3.0  3  TIGR02323 CP_lyasePhnK: phosphonate C-P lyase system protein PhnK
    1.6e-11   41.9   0.0    0.00019   18.8   0.0    3.2  3  TIGR01978 sufC: FeS assembly ATPase SufC
      2e-10   38.6   0.0      9e-06   23.3   0.0    2.6  2  TIGR03740 galliderm_ABC: lantibiotic protection ABC transporter, ATP-binding subunit
    9.3e-10   35.5   0.0    1.1e-06   25.3   0.0    2.7  2  TIGR01194 cyc_pep_trnsptr: cyclic peptide transporter
    1.6e-09   33.8   0.2    0.00015   17.3   0.0    3.0  3  TIGR00956 3a01205: pleiotropic drug resistance family protein
    1.6e-06   23.1   0.1     0.0052   11.4   0.0    2.2  2  TIGR01257 rim_protein: rim ABC transporter
  ------ inclusion threshold ------
      0.036   10.0   0.0        8.1    2.2   0.0    2.8  3  TIGR00630 uvra: excinuclease ABC subunit A


Domain annotation for each model (and alignments):
>> TIGR00957  MRP_assoc_pro: multi drug resistance-associated protein (MRP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.9   0.0    0.0013     0.093     198     257 ..      17      76 ..       3      89 .. 0.88
   2 !  189.2   1.2   2.5e-58   1.8e-56     305     652 ..      90     422 ..      76     432 .. 0.87
   3 !  418.7   1.4  1.4e-127    1e-125     653    1271 ..     525    1132 ..     519    1139 .. 0.87
   4 !   16.7   0.0   2.7e-06    0.0002    1279    1319 ..    1218    1258 ..    1204    1260 .. 0.90
   5 !  158.1   0.1   5.9e-49   4.2e-47    1370    1518 ..    1260    1405 ..    1258    1408 .. 0.96

  Alignments for each domain:
  == domain 1    score: 7.9 bits;  conditional E-value: 0.0013
   TIGR00957 198 dpnpcpessasflsrltfwwitklivrgyrqpleesdlwslkkedtseevvpvlvenwkk 257
                 ++ p p s  +++s+ tf w+ + + rg  +pl  ++l  l+  d+++ v + l + w  
  MMETSP1137-20121227|3670_1  17 QNHPSPISPPNLISQATFGWLGETLKRGADHPLTADELPPLQARDSARIVTDTLEKHWSA 76 
                 4679999*************************************************9975 PP

  == domain 2    score: 189.2 bits;  conditional E-value: 2.5e-58
   TIGR00957 305 psllkvlyktfgsyfllsflfkaiqdllsfagpkllellikfvndrkapdwqgylytallfvsallqtlvlqqyfhiifvsgvriktavvgavyrkalvitnsarksstvgeivnlmsvdaqrfmdlatylnllwsaplq.............vilalyllwlnlgpsvlagvavmvllvplnavvavktktyqvaqmkskdnriklmneilngikvlklyawelafkdkvlairqeelkvlkksaylaavgtftwvctpflvalitlavyvtvdennildakkafvslalfnilrlplnilpmvisslvqasvslkrlriflsqeelepdsierrsikdgegnsitvknatftwardepp 652
                  ++l +++++fg  f ++ l k+  dl   a+p ll+ +i +++   a   +g   +  l+  + lq++ l++yf  +f +g+r+++avvg+ yrk l ++ +ar +s+ gei nlm  da rf dl++yl  lw aplq             v+ a++llw+++gpsv+ g+av+  ++ +n  +a  t   q + +k++d+r kl+ e l gikv+kl+awelaf  +++a r  el           + t tw+ +        l v+       +l  k+a+  l+   +lr pl +lp+v+ ++ +a +sl rl  fl  ee +p s         +g  ++v  +tf w   +p 
  MMETSP1137-20121227|3670_1  90 GTILLAMWRSFGVEFGVAGLVKLASDLCQVASPLLLKRIIGMLEA-GADLRMGLRPSLALLGLSALQAFCLRHYFAQVFRTGLRLRAAVVGIAYRKMLRLSPTARIASSSGEITNLMGSDAARFADLTPYLHALWFAPLQaixaflpenhxlqVVAAIFLLWQEIGPSVFPGLAVIFAVLHINKRIAAATFRLQQKLLKLRDERAKLVRETLSGIKVIKLHAWELAFATRIQASRGAELAA---------MRTVTWLRAI-------LSVF------SLLTLKTAMTVLSAVSLLRSPLVFLPLVLQNVQEANLSLGRLSRFLNAEEYQPTSAGD-----LSGVGVAVDGGTFEWGGVDPQ 422
                 56788999********************************99864.5666778777766777789*************************************************************************86222222222222266789***************************************************************************99888755.........5566776432.......3333......35667888889999999************************************99754.....445789999******988886 PP

  == domain 3    score: 418.7 bits;  conditional E-value: 1.4e-127
   TIGR00957  653 tlngltlsipegalvavvgqvgcgkssllsallaemdkvegkvalkgsvayvpqqawiqndslrenilfgkaleekyykavleacalladleilpsgdrteigekgvnlsggqkqrvslaravysdadiyllddplsavdahvakhifekvigpkgllknktrilvthgisylpqvdviivlsdgkisemgsyqelldrdgafaeflrtyasaedeldaeddgvasvsaedkeaklvedgllvtdvvgkqlqrqlsasssdsedtsrhlsssaelqkaeakeetwklmeadkaqigqvklsvywdyakaiglfitllsillflcnsvsalasnywlslwtddavvdgtqentklrlsvyaalgilqgiavlgysmavsiggilasrvlhldllhnvlrspmsffertpsgnlvnrfskeldvvdsvlaevikmllgslfnvigavivillatplaaviilplallyflvqrfyvassrqlkrlesvsrspvyshfnetllgvsvirafeeqerfiiqsdlkvdenqkayypsivanrwlavrlelvgncivlfaalfa............vis.........rsslsaglvglsvsyslqvtaylnwlvrmsseletnivaverlkeysetekeapwqie 1271
                   l++++++   g lva+vg vg gkss+lsall++m  v g val+g  ay  q  +i  +s+r+nilf ++ ++++y+ vl+ac l++dl +lp  d t ig++gv lsggq+ rv+laravy+da++yllddpl+a d+ va  ++e+vigp+gllk+k ril t ++  l  +d i vl +g++ e g+y+el   dgaf+ +l+     e+  ++  +  a+ + ++ e  + e                      d +  + ++ +  e+q   a  e+ +  + d a++g+v+ls   d  +a     +++++ l +  ++++l+s++wl+ w+  +       ++  +l+ ya   ++  +a++  s  v   g+ a  +lh +ll  v+r+p++ff+ tp g+l+nrfskel++vd  l++ ++ + ++l +v +++ v+ +++p +a+ ++p+a  y+ +q++y +ssr++kr+es +r+pv +h++ +l g s iraf+  ++f++qs+  vd+  ++   s + n wl +rle++g  i  faal+a             ++         r s   g   l+v+ ++qvt  lnw vr + e+e+ ++averlk y     e  +  e
  MMETSP1137-20121227|3670_1  525 VLRSVDMRASAGELVALVGAVGAGKSSFLSALLGDMPCVGGSVALRGRCAYTAQTPFILGASVRDNILFDQPYDHERYERVLRACQLMPDLSLLPERDFTLIGDRGVFLSGGQRARVALARAVYADAEVYLLDDPLAACDSRVAAALMEEVIGPNGLLKDKLRILSTSNLESLGGADQIHVLRNGEVQESGTYEELARTDGAFSRLLQLMQ--EERVHSATSSDAGHGRHEGEGDENEA--------------------GDDGTSGGDKPQLVEVQSGVAEGEQMADEDVDDARVGRVELSXALDVGRAA----AIAMLPL-VLAEMTTLGSQFWLTRWASGS-----GMRQLPQLGGYALWSLVAAAAIVVRSRLVLGLGLAAGARLHDSLLARVIRAPLAFFDLTPRGRLLNRFSKELNTVDVALPSALQTYASTLASVATTLTVVCASSPPFALFLVPIASAYLALQKYYSSSSREIKRIESSARAPVVTHIASSLDGLSTIRAFDAGRKFVKQSEATVDASLRSSLTSALINCWLGLRLEMLGAFIAAFAALMAfarnapvgppvaAVGasgwllsklRGSGGVGTAALAVTLAVQVTQTLNWTVRQAVEVESHLIAVERLKSYDSLAPEPGYTAE 1132
                  6899**********************************************************************************************************************************************************************************************************98654..44444444433444443333333332....................2333333444556789999999899999999***********999876665....4444444.4457889**********8654.....34445579****************999999999*******************************************************************************************************************************************************************************87223332222211122122222122233344556699**********************************987777666655 PP

  == domain 4    score: 16.7 bits;  conditional E-value: 2.7e-06
   TIGR00957 1279 wpksgrvefrnyslryredldlvlrdlnvtieggekvgivg 1319
                  + ++grve+r+  l+yre+l  vl+ l+ t+  gekvg+v 
  MMETSP1137-20121227|3670_1 1218 YAPHGRVELRDLRLKYREGLPDVLHGLTATVLPGEKVGVVX 1258
                  6678***********************************95 PP

  == domain 5    score: 158.1 bits;  conditional E-value: 5.9e-49
   TIGR00957 1370 vlfsgslrmnldpfsqysdeevwlalelahlkdfvsalpdkldfecaeggenlsvgqrqlvclarallrktkilvldeataavdletdnliqstirtqfedctvltiahrlntimdytrvlvldkgevaefdapsellqq.rgifysmak 1518
                  vlfsg++r nldp+++++ + +w al+  hl + v +    ld e ae g n+s gqrql+c+arall ++ ++++deat+avd etd liq tir+ f d tv+tiahrlnt++d  +++vl+kge+ae+++p +l+++ rgif  m +
  MMETSP1137-20121227|3670_1 1260 VLFSGTVRDNLDPLGEHTAQAMWAALQRVHLAHAVRS----LDDEVAEDGANFSTGQRQLLCIARALLSRCSLVIMDEATSAVDAETDALIQRTIRSAFADATVITIAHRLNTVLDADKIMVLEKGELAEYGSPRDLMAKpRGIFREMVH 1405
                  9******************************999987....67789*******************************************************************************************9866****99975 PP

>> TIGR01271  CFTR_protein: cystic fibrosis transmembrane conductor regulator (CFTR)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.6   0.1   6.1e-22   4.4e-20       4     309 ..      21     342 ..      18     362 .. 0.83
   2 !  168.8   0.0   3.7e-52   2.6e-50     441     645 ..     525     731 ..     506     745 .. 0.95
   3 !   90.6   0.0   1.5e-28   1.1e-26     954    1207 ..     874    1146 ..     851    1154 .. 0.79
   4 ?    1.5   0.0      0.11       7.8    1212    1251 ..    1218    1257 ..    1207    1260 .. 0.91
   5 !   75.4   0.0   5.4e-24   3.9e-22    1302    1447 ..    1260    1402 ..    1255    1409 .. 0.89

  Alignments for each domain:
  == domain 1    score: 68.6 bits;  conditional E-value: 6.1e-22
   TIGR01271   4 spvekanvlsklffswtrpilrkgyrkklelsdiykipsvdsadnlseklerewdrelas.....akkkpkllnalrrcflwrflfygillylgevtkavqplllgriiasydaknaeereiayyla.lglsllfivrtlllhpaifglhhlgmqlrialfsliykktlklssrvldkistgqlvsllsnnlnkldeglalahfvwiaplq.............vvllvgliwelleasafcglgflillalvqallgkkmmkyrdkragkiserlaitseiieniqsvkaycweeamekiienirqvelkltrkvayvryfsss 309
                 sp+   n++s+  f w    l++g  + l   ++  + + dsa  +++ le+ w   l+s     a  +  +l a+ r f  +f   g++   +++++   plll rii+  +a       +   la lgls l   + + l+     +   g++lr a+  + y+k+l+ls       s g++  l+ ++  ++ +     h +w aplq             vv  + l+w+++  s+f gl+++  +  ++  ++    + ++k     +er  +  e +  i+ +k ++we a+ + i+  r +el   r v+ +r + s 
  MMETSP1137-20121227|3670_1  21 SPISPPNLISQATFGWLGETLKRGADHPLTADELPPLQARDSARIVTDTLEKHWSALLTSkvsqsASGHGTILLAMWRSFGVEFGVAGLVKLASDLCQVASPLLLKRIIGMLEAGADLRMGLRPSLAlLGLSAL---QAFCLRHYFAQVFRTGLRLRAAVVGIAYRKMLRLSPTARIASSSGEITNLMGSDAARFADLTPYLHALWFAPLQaixaflpenhxlqVVAAIFLLWQEIGPSVFPGLAVIFAVLHINKRIAAATFRLQQKLLKLRDERAKLVRETLSGIKVIKLHAWELAFATRIQASRGAELAAMRTVTWLRAILSV 342
                 8999**************************************************9887752111144567899****************************************988776666555552355554...455555555566789********************9999999******************************8722222222211114556789**************98777677777888888888888888899999999****************************************88764 PP

  == domain 2    score: 168.8 bits;  conditional E-value: 3.7e-52
   TIGR01271 441 vlknislklekgqllavagstgsgkssllmmilgelepsegkikhsgrisfspqvswimpgtikdniifglsydeyrytsvikacqleediallaekdktvlgeggitlsggqrarislaravykdadlylldspfsyldvvtekeifesclc..kllanktrilvtsklehlkkadkilllhegscyfygtfselqakkpdfsskl 645
                 vl+ ++++   g+l+a+ g+ g+gkss+l  +lg++    g +   gr ++++q+++i+  +++dni+f   yd  ry  v++acql  d++ll+e+d t +g+ g+ lsggqrar++laravy da++ylld p++  d      ++e+ +    ll +k ril ts le l  ad+i +l +g+    gt+ el      fs  l
  MMETSP1137-20121227|3670_1 525 VLRSVDMRASAGELVALVGAVGAGKSSFLSALLGDMPCVGGSVALRGRCAYTAQTPFILGASVRDNILFDQPYDHERYERVLRACQLMPDLSLLPERDFTLIGDRGVFLSGGQRARVALARAVYADAEVYLLDDPLAACDSRVAAALMEEVIGpnGLLKDKLRILSTSNLESLGGADQIHVLRNGEVQESGTYEELARTDGAFSRLL 731
                 899***************************************************************************************************************************************************996336*****************************************9999998755 PP

  == domain 3    score: 90.6 bits;  conditional E-value: 1.5e-28
   TIGR01271  954 ltvskrlhkkmlhsvlqapmavlntlkagrilnrfskdiaiiddllpltlfdliqlllivlgaiavvsvlqpyilvaaipvavifivlrayflrtsqqlkqlesearspifshliislkglwtvrafgrqsyfetlfhkalnlhtanwflylstlrwfqlridii..fvlffiavvfia...........iatnd......egegevg...iiltlamnilstlqwavnssidvdglmrsvsrvfkfidlpqeeskpkkstkkyqlskvlvienkh 1207
                  l+   rlh+ +l  v++ap+a ++    gr+lnrfsk++ ++d  lp +l  +   l  v  +++vv+   p   +  +p+a +++ l+ y+  +s+++k++es ar+p+ +h+  sl gl t+raf     f      +++      +       w+ lr++++  f+  f a +  a           +++++       g g vg   + +tla++++ tl+w+v  +++v++ + +v+r+  +  l +e + ++++ k+     + + e +h
  MMETSP1137-20121227|3670_1  874 LAAGARLHDSLLARVIRAPLAFFDLTPRGRLLNRFSKELNTVDVALPSALQTYASTLASVATTLTVVCASSPPFALFLVPIASAYLALQKYYSSSSREIKRIESSARAPVVTHIASSLDGLSTIRAFDAGRKFVKQSEATVDASLRSSLTSALINCWLGLRLEMLgaFIAAFAALMAFArnapvgppvaaVGASGwllsklRGSGGVGtaaLAVTLAVQVTQTLNWTVRQAVEVESHLIAVERLKSYDSLAPEPGYTAEQLKP---LLDAIAESEH 1146
                  566789******************************************************************9999***************************************************988888777777776666666665556689999999974466666665432212222222111333222222225667776333689*********************************9999997776665554...4445555555 PP

  == domain 4    score: 1.5 bits;  conditional E-value: 0.11
   TIGR01271 1212 wpsggqmtvkdltakyteagravlqdlsfsveagqrvgll 1251
                  +   g+++++dl  ky e+   vl+ l+ +v +g++vg++
  MMETSP1137-20121227|3670_1 1218 YAPHGRVELRDLRLKYREGLPDVLHGLTATVLPGEKVGVV 1257
                  556899********************************97 PP

  == domain 5    score: 75.4 bits;  conditional E-value: 5.4e-24
   TIGR01271 1302 filsgtfrknldpyeqysdeeiwkvaeevglksvieqfpdkldfvlvdggyvlsnghkqlmclarsilskakillldepsafldpvtlqiirktlkqafsnctvilsehrveallecqqflviegssvkqydsiqkllne.asllkq 1447
                   ++sgt r nldp  +++ + +w   + v l   +  + d     + + g  +s g +ql+c+ar++ls++ ++++de ++ +d  t  +i++t++ af++ tvi   hr++++l+ ++++v+e+ ++ +y s + l+++ +  +++
  MMETSP1137-20121227|3670_1 1260 VLFSGTVRDNLDPLGEHTAQAMWAALQRVHLAHAVRSLDDE----VAEDGANFSTGQRQLLCIARALLSRCSLVIMDEATSAVDAETDALIQRTIRSAFADATVITIAHRLNTVLDADKIMVLEKGELAEYGSPRDLMAKpRGIFRE 1402
                  579****************************9999876665....55667789*******************************************************************************999998762444544 PP

>> TIGR02203  MsbA_lipidA: lipid A export permease/ATP-binding protein MsbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.0   1.0   0.00063     0.045     142     263 ..     241     362 ..     225     368 .. 0.82
   2 !   90.1   0.5   3.5e-28   2.5e-26     341     569 ..     518     734 ..     491     737 .. 0.88
   3 !   26.0   0.0   8.9e-09   6.4e-07      90     289 ..     880    1075 ..     872    1106 .. 0.91
   4 ?    1.3   0.0      0.28        20     329     365 ..    1221    1257 ..    1215    1261 .. 0.94
   5 !   97.3   1.2   2.3e-30   1.6e-28     417     561 ..    1260    1399 ..    1257    1407 .. 0.85

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 0.00063
   TIGR02203 142 tvigllivllylsWqltli..vvvllPvlallvrvvskrlrkiskeiqnsigeltkvveealqgyrvvklfggqeaeakRfdavsnrlrrlalk.vasasslssplvqliasvalavvllialvq 263
                 +v++  i+ll+ +   ++   ++v++ vl +  r+++  +r ++++  ++  e +k v e+l+g +v+kl++ + a a R +a        a++ v+  +++ s ++ l  + a++v+ ++ l +
  MMETSP1137-20121227|3670_1 241 QVVA-AIFLLWQEIGPSVFpgLAVIFAVLHINKRIAAATFR-LQQKLLKLRDERAKLVRETLSGIKVIKLHAWELAFATRIQASRGA-ELAAMRtVTWLRAILSVFSLLTLKTAMTVLSAVSLLR 362
                 5554.46788888777765448999****999999999998.567788999************************999**9875555.55555516778999999999999****9998887765 PP

  == domain 2    score: 90.1 bits;  conditional E-value: 3.5e-28
   TIGR02203 341 ypgddrealdsislkveaGevvalvGrsGsGkstlvnllpRFyepdsGeillDgvdladlkLasLRrqvalvsqdvvLFddtiaenvaYgeleevdeaeveealaaaylkdlvdklpeGldtevGengskLsGGqRqRlaiaRallkdaPiLiLDeatsaLDneseRlvqaaL...erlmkgRttlviahRLstiekaDrivvlddGkiverGtheeLlarnGlYasLhkiq 569
                  + ++r +l+s++++++aGe valvG  G+Gks+ ++ l        G++   g  +       LR + a+ +q  ++   ++ +n+ + +   +d+++ e++l+a +l+  +  lpe   t +G++g+ LsGGqR R+a+aRa++ da + +LD+  +a D+    ++ + +   + l+k++  ++    L  +  aD+i vl +G++ e+Gt+eeL   +G +++L ++ 
  MMETSP1137-20121227|3670_1 518 GGARERFVLRSVDMRASAGELVALVGAVGAGKSSFLSALL-------GDMPCVGGSV------ALRGRCAYTAQTPFILGASVRDNILFDQP--YDHERYERVLRACQLMPDLSLLPERDFTLIGDRGVFLSGGQRARVALARAVYADAEVYLLDDPLAACDSRVAAALMEEVigpNGLLKDKLRILSTSNLESLGGADQIHVLRNGEVQESGTYEELARTDGAFSRLLQLM 734
                 5678999**************************9776554.......4444444443......5999**********************999..999*****************************************************************987666555433446799**********************************************998764 PP

  == domain 3    score: 26.0 bits;  conditional E-value: 8.9e-09
   TIGR02203   90 lRkklfeklltlpsayfdkessgsllsrltfdseqvvsaatdvlkvlvretltvigllivllylsWqltlivvvllPvlallvrvvskrlrkiskeiqnsigeltkvveealqgyrvvklfggqeaeakRfdavsnrlrrlalkvasasslssplvqliasvalavvllialvqaqagaltvGelvafitamlalikplk 289 
                  l  +l+++++++p a+fd ++ g+ll+r+  + + v  a+  +l++     ++v + l v+   s  ++l +v ++     l +++s   r+i++    + + + + ++ +l+g   ++ f++     ++f + s+  ++ +l++  +s+l +  + l   +  a++ + a   a a +  vG  va + a   l++ l+
  MMETSP1137-20121227|3670_1  880 LHDSLLARVIRAPLAFFDLTPRGRLLNRFSKELNTVDVALPSALQTYASTLASVATTLTVVCASSPPFALFLVPIASAYLALQKYYSSSSREIKRIESSARAPVVTHIASSLDGLSTIRAFDA----GRKFVKQSEATVDASLRSSLTSALINCWLGLRLEMLGAFIAAFAALMAFARNAPVGPPVAAVGASGWLLSKLR 1075
                  66789********************************************999*********************************************************************97....5789999*******************99999988888888888888888888888888888887777776665 PP

  == domain 4    score: 1.3 bits;  conditional E-value: 0.28
   TIGR02203  329 rGkvefrnvtfrypgddrealdsislkveaGevvalv 365 
                  +G+ve+r++  +y++   ++l+++  +v +Ge v +v
  MMETSP1137-20121227|3670_1 1221 HGRVELRDLRLKYREGLPDVLHGLTATVLPGEKVGVV 1257
                  69********************************988 PP

  == domain 5    score: 97.3 bits;  conditional E-value: 2.3e-30
   TIGR02203  417 vLFddtiaenvaYgeleevdeaeveealaaaylkdlvdklpeGldtevGengskLsGGqRqRlaiaRallkdaPiLiLDeatsaLDneseRlvqaaLerlmkgRttlviahRLstiekaDrivvlddGkiverGtheeLlar.nGl 561 
                  vLF +t+ +n+      e + + + +al+  +l + v    + ld ev e+g++ s GqRq l iaRall    ++i+Deatsa+D+e + l+q ++     + t + iahRL t+ +aD+i+vl++G++ e G+ ++L+a+ +G+
  MMETSP1137-20121227|3670_1 1260 VLFSGTVRDNLDPL--GEHTAQAMWAALQRVHLAHAV----RSLDDEVAEDGANFSTGQRQLLCIARALLSRCSLVIMDEATSAVDAETDALIQRTIRSAFADATVITIAHRLNTVLDADKIMVLEKGELAEYGSPRDLMAKpRGI 1399
                  57777777777532..233444555666666666655....457889*********************************************************************************************973565 PP

>> TIGR00958  3a01208: antigen peptide transporter 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.2      0.12       8.3     317     403 ..     270     361 ..     237     394 .. 0.69
   2 !   79.0   0.0   7.4e-25   5.3e-23     495     710 ..     524     730 ..     520     731 .. 0.91
   3 !   23.1   0.0   5.9e-08   4.3e-06     234     370 ..     878    1014 ..     873    1044 .. 0.81
   4 ?    2.3   0.0      0.12       8.5     468     513 ..    1216    1257 ..    1212    1259 .. 0.85
   5 !   96.6   0.2   3.4e-30   2.5e-28     565     711 .]    1260    1404 ..    1253    1404 .. 0.87

  Alignments for each domain:
  == domain 1    score: 2.3 bits;  conditional E-value: 0.12
   TIGR00958 317 aekvfgkvyqklseevqeavakanqvaeEalsglrTVrSFaaEekEasrfke....kleeilqlnkkkalayalylwt.tellgllilvlvL 403
                 ++k +      l++++ +   +  ++++E lsg++ ++  a E   a+r +     +l  ++++++ +a+  ++ l+t +  +  l+ v++L
  MMETSP1137-20121227|3670_1 270 INKRIAAATFRLQQKLLKLRDERAKLVRETLSGIKVIKLHAWELAFATRIQAsrgaELAAMRTVTWLRAILSVFSLLTlKTAMTVLSAVSLL 361
                 34444444444444444444556789*****************9999998752333799*******99998887766514455555555555 PP

  == domain 2    score: 79.0 bits;  conditional E-value: 7.4e-25
   TIGR00958 495 pvlkdLtftlepGevvalVGPsGsGKStvaallenlYqPtgGqvllDgkplkeydhkylhrkvalVgqEPvlfsgsvreNiaYGltktedeevtaaakaanahdFiselekgydtevgekGsqlsgGqkqriAiARALvrkPrvLiLDeAtSALDaeveqllqe.....sksaksrtvlliahrLstvekadkilvlkkgsvvelGthkqLmekedvykql 710
                  vl+   +  ++Ge valVG  G GKS+  + l       gG+v l g             + a  +q P + + svr+Ni +  + +++e+   + +a++    +s l++   t +g++G +lsgGq+ r+A+ARA+  +  v +LD+  +A D++v ++l e         k++  +l +  L+    ad+i vl++g+v+e Gt+++L  +++++++l
  MMETSP1137-20121227|3670_1 524 FVLRSVDMRASAGELVALVGAVGAGKSSFLSALLGDMPCVGGSVALRG-------------RCAYTAQTPFILGASVRDNILFD-QPYDHERYERVLRACQLMPDLSLLPERDFTLIGDRGVFLSGGQRARVALARAVYADAEVYLLDDPLAACDSRVAAALMEevigpNGLLKDKLRILSTSNLESLGGADQIHVLRNGEVQESGTYEELARTDGAFSRL 730
                 6899999999*******************9998888788888887755.............567789***************97.56778999999999999999***************************************************888888776665567899*************************************9999999887 PP

  == domain 3    score: 23.1 bits;  conditional E-value: 5.9e-08
   TIGR00958  234 lriredlfksllrQdigFfdenktGeltSRlssDtstvseslslnvnvllrnlvkllgllifmlslSprLtlvtllalPlvllaekvfgkvyqklseevqeavakanqvaeEalsglrTVrSFaaEekEasrfkekl 370 
                  +r++  l+  ++r  ++Ffd ++ G l  R s++ +tv   l+  +  +  +l  + ++l++ +  Sp  +l ++      l+++k +++  +++++    a a     +   l gl T+r F a  k +++ +  +
  MMETSP1137-20121227|3670_1  878 ARLHDSLLARVIRAPLAFFDLTPRGRLLNRFSKELNTVDVALPSALQTYASTLASVATTLTVVCASSPPFALFLVPIASAYLALQKYYSSSSREIKRIESSARAPVVTHIASSLDGLSTIRAFDAGRKFVKQSEATV 1014
                  699******************************************************************9876655555567777888877777766555555555555667899********99877666655555 PP

  == domain 4    score: 2.3 bits;  conditional E-value: 0.12
   TIGR00958  468 gtlapknleGkveFqdVsFsYPsrpdkpvlkdLtftlepGevvalV 513 
                  g++ap   +G+ve +d    Y +     vl++Lt t+ pGe v +V
  MMETSP1137-20121227|3670_1 1216 GEYAP---HGRVELRDLRLKYRE-GLPDVLHGLTATVLPGEKVGVV 1257
                  55666...89***********54.5667*************99887 PP

  == domain 5    score: 96.6 bits;  conditional E-value: 3.4e-30
   TIGR00958  565 vlfsgsvreNiaYGltktedeevtaaakaanahdFiselekgydtevgekGsqlsgGqkqriAiARALvrkPrvLiLDeAtSALDaeveqllqe..sksaksrtvlliahrLstvekadkilvlkkgsvvelGthkqLmeked.vykqlv 711 
                  vlfsg+vr+N+   l + + + + aa ++ +      +  +  d ev e G   s+Gq+q + iARAL+ +  ++i+DeAtSA+Dae+++l+q+     +++ tv+ iahrL+tv  adki+vl+kg++ e G  ++Lm+k+  +++++v
  MMETSP1137-20121227|3670_1 1260 VLFSGTVRDNLD-PLGEHTAQAMWAALQRVHL----AHAVRSLDDEVAEDGANFSTGQRQLLCIARALLSRCSLVIMDEATSAVDAETDALIQRtiRSAFADATVITIAHRLNTVLDADKIMVLEKGELAEYGSPRDLMAKPRgIFREMV 1404
                  9*********87.4666666666666665554....445567899************************************************97667789**************************************99877999886 PP

>> TIGR03797  NHLM_micro_ABC2: NHLM bacteriocin system ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   0.7     0.024       1.7     282     403 ..     261     394 ..     237     410 .. 0.73
   2 !   91.6   0.1   1.3e-28   9.6e-27     466     683 ..     523     732 ..     518     735 .. 0.92
   3 !   10.1   1.8   0.00059     0.042     145     343 ..     815    1013 ..     799    1095 .. 0.80
   4 ?    3.8   0.0     0.047       3.4     449     485 ..    1221    1257 ..    1215    1260 .. 0.95
   5 !  100.7   1.0   2.3e-31   1.7e-29     538     683 ..    1261    1405 ..    1255    1408 .. 0.93

  Alignments for each domain:
  == domain 1    score: 4.8 bits;  conditional E-value: 0.024
   TIGR03797 282 vllalvaiavtlvlgllqvrkerkllelegklsgltvqlingisKlrvagaeerafaawakefseqrklelkaqriedlltvlnavlpvltsavlfalaisll............aaaklslgsflafntafgs 403
                 ++++++++ +   ++  + r ++kll+l+ + + l+ + ++gi+ +++ + e  + ++++ +   + + ++++  ++ +l+v++      +++vl a+                 ++a+lslg++  f  a   
  MMETSP1137-20121227|3670_1 261 LAVIFAVLHINKRIAAATFRLQQKLLKLRDERAKLVRETLSGIKVIKLHAWELAFATRIQASRGAELAAMRTVTWLRAILSVFSLLTLKTAMTVLSAVSLLRSplvflplvlqnvQEANLSLGRLSRFLNAEEY 394
                 5566667777888999999****************************999887777777777777777777777788888887766666666666555444335566677777777777777777777666555 PP

  == domain 2    score: 91.6 bits;  conditional E-value: 1.3e-28
   TIGR03797 466 plvLddvslkiepGefvaivGaSGsGKStllrlLLgFekPesGsvlyDGqdlekldvqavRrqlGvVLQngrllsgsileniaggasltldeaweaarmagleeDikamPmglhTvisegggtlSGGQrQRlliAralvrkPrillfDEATSALDNrtQaiVsesl...ek.lk.vtRiviAHRLSTirnadrilvleeGrvveqGsyeeLlakeGlfaelar 683
                 + vL++v +++++Ge va+vGa G+GKS++l  LLg + P  G               a+R ++    Q   +l +s+ +ni+ ++++ +++   ++r   l  D++ +P   +T+i + g  lSGGQr R+ +Ara+    ++ l+D+   A D r  a+ +e +   +  lk   Ri+    L  +  ad+i vl +G+v e+G+yeeL++++G+f +l++
  MMETSP1137-20121227|3670_1 523 RFVLRSVDMRASAGELVALVGAVGAGKSSFLSALLG-DMPCVGG------------SVALRGRCAYTAQTPFILGASVRDNILFDQPYDHERYERVLRACQLMPDLSLLPERDFTLIGDRGVFLSGGQRARVALARAVYADAEVYLLDDPLAACDSRVAAALMEEVigpNGlLKdKLRILSTSNLESLGGADQIHVLRNGEVQESGTYEELARTDGAFSRLLQ 732
                 579*********************************.6776653............2378999999**********************************************************************************************999987333221332579999**************************************9976 PP

  == domain 3    score: 10.1 bits;  conditional E-value: 0.00059
   TIGR03797  145 gllgtllglvvPlatgilldeviPdaerslllqvalallaaalgallfqlaqslavlRletavdaslqaavwdrLLrlpasfFreysagdLasram.gvsqirrllsgatlkallssifallnlvlllvyslklalvavllalvaiavtlvlgllqvrkerkllelegklsgltvqlingisKlrvagaeerafaawake 343 
                  ++l  +l+ ++ l +++ l +    +  ++l q++   l  +l+a++  +++s  vl l  a+ a+l+ +++ r++r p +fF     g L++r +  ++++  +l +a+++ + +    +++l+++ + s   al  v +a + +a+  + +    + +r   + ++ + + +   ++g+s +r   a +++  +   +
  MMETSP1137-20121227|3670_1  815 AMLPLVLAEMTTLGSQFWLTRWASGSGMRQLPQLGGYALW-SLVAAAAIVVRSRLVLGLGLAAGARLHDSLLARVIRAPLAFFDLTPRGRLLNRFSkELNTVDVALPSALQTYASTLASVATTLTVVCASSPPFALFLVPIASAYLALQKYYSSSSREIKRIESSARAPVVTHIASSLDGLSTIRAFDAGRKFVKQSEAT 1013
                  5555555555556666666666666666777787766655.555556668999*****************************************75279*******999998888888888999999************************999999999999999999*************999877776665555555 PP

  == domain 4    score: 3.8 bits;  conditional E-value: 0.047
   TIGR03797  449 sGaievdrvtFrYekdgplvLddvslkiepGefvaiv 485 
                  +G++e++ +  +Y++  p vL+ ++ ++ pGe v++v
  MMETSP1137-20121227|3670_1 1221 HGRVELRDLRLKYREGLPDVLHGLTATVLPGEKVGVV 1257
                  79********************************998 PP

  == domain 5    score: 100.7 bits;  conditional E-value: 2.3e-31
   TIGR03797  538 llsgsileniaggasltldeaweaarmagleeDikamPmglhTvisegggtlSGGQrQRlliAralvrkPrillfDEATSALDNrtQaiVseslek..lkvtRiviAHRLSTirnadrilvleeGrvveqGsyeeLlak.eGlfaelar 683 
                  l+sg++ +n+    + t ++ w+a++++ l++ +++    l   ++e g++ S GQrQ l iAral ++  ++++DEATSA+D +t a++  ++      +t i iAHRL T+ +ad+i+vle+G+++e Gs ++L+ak +G+f e+++
  MMETSP1137-20121227|3670_1 1261 LFSGTVRDNLDPLGEHTAQAMWAALQRVHLAHAVRS----LDDEVAEDGANFSTGQRQLLCIARALLSRCSLVIMDEATSAVDAETDALIQRTIRSafADATVITIAHRLNTVLDADKIMVLEKGELAEYGSPRDLMAKpRGIFREMVH 1405
                  7899999999999999******************97....67889************************************************98733589************************************9637***99986 PP

>> TIGR02204  MsbA_rel: ABC transporter, permease/ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   3.2       3.7   2.7e+02      72     129 ..     156     213 ..     103     405 .. 0.59
   2 !   93.6   0.1   3.4e-29   2.5e-27     351     574 ..     521     733 ..     476     735 .. 0.85
   3 !   17.1   1.3   5.2e-06   0.00038      68     244 ..     855    1031 ..     847    1052 .. 0.89
   4 ?   -2.4   0.0       4.1   2.9e+02     335     372 ..    1221    1257 ..    1219    1273 .. 0.90
   5 !   94.6   1.3   1.8e-29   1.3e-27     424     570 ..    1260    1402 ..    1252    1406 .. 0.84

  Alignments for each domain:
  == domain 1    score: -2.3 bits;  conditional E-value: 3.7
   TIGR02204  72 alatalrfylvsslGervvadlrkavfahllelspaffdknrsgevlsrltadttllk 129
                 a+     f  v + G r+ a +    + ++l+lsp+     +sge+   + +d++   
  MMETSP1137-20121227|3670_1 156 AFCLRHYFAQVFRTGLRLRAAVVGIAYRKMLRLSPTARIASSSGEITNLMGSDAARFA 213
                 4444444555666666666666666666666666666666666666666666665443 PP

  == domain 2    score: 93.6 bits;  conditional E-value: 3.4e-29
   TIGR02204 351 pdqkaldgldltvrpGetvalvGPsGaGkstllelllrfydPqsGailldGvdlreldpeelrerlalvpqdsalfaasvleniryGrpdasdeeveaaakaaeadefisklpeGydtllGergvtLsGGqkqriaiarailkdapiLLLdeatsaLdaeseqlvqqal...eelmkgrttlviahrLatvlkadrivvldkGriveqGthaeLiakggLyarlarL 574
                  ++ +l+ +d++  +Ge valvG  GaGks  l+ ll       G++              lr r a  +q + ++ asv++ni + +p   +e+ e+  +a++    +s lpe   tl+G+rgv LsGGq+ r+a+ara+ +da + LLd+  +a d++   ++ + +   + l k++  ++    L  +  ad+i vl +G++ e+Gt++eL ++ g + rl +L
  MMETSP1137-20121227|3670_1 521 RERFVLRSVDMRASAGELVALVGAVGAGKSSFLSALLGDMPCVGGSV-------------ALRGRCAYTAQTPFILGASVRDNILFDQPYD-HERYERVLRACQLMPDLSLLPERDFTLIGDRGVFLSGGQRARVALARAVYADAEVYLLDDPLAACDSRVAAALMEEVigpNGLLKDKLRILSTSNLESLGGADQIHVLRNGEVQESGTYEELARTDGAFSRLLQL 733
                 46899*****************************9996555555544.............47889**********************9965.4556677777777888999************************************************988776665535578*************************************************9887 PP

  == domain 3    score: 17.1 bits;  conditional E-value: 5.2e-06
   TIGR02204   68 vlvlalatalrfylvsslGervvadlrkavfahllelspaffdknrsgevlsrltadttllksvvGaslsialrnlllliGalamlvitsvkltslvllavPlvllPillfgrrvrklsresqdrladasayagealeaiktvqayaseeaersrfdaavekayeaarkrikarall 244 
                   lv a a ++r  lv  lG    a l  ++ a++++   affd +  g +l r++ + + +  ++ ++l      l  +  +l+++++ s+ ++++++ +    l+    ++ + r++ r      a ++++++ +l+ + t++a+   ++  ++ +a+v+++++ + ++  + ++l
  MMETSP1137-20121227|3670_1  855 SLVAAAAIVVRSRLVLGLGLAAGARLHDSLLARVIRAPLAFFDLTPRGRLLNRFSKELNTVDVALPSALQTYASTLASVATTLTVVCASSPPFALFLVPIASAYLALQKYYSSSSREIKRIESSARAPVVTHIASSLDGLSTIRAFDAGRKFVKQSEATVDASLRSSLTSALINCWL 1031
                  578899999************************************************************99999999999999********99998887777777777889999999999999999**********************99999999999999999887776666665 PP

  == domain 4    score: -2.4 bits;  conditional E-value: 4.1
   TIGR02204  335 rgeiefeevkfayParpdqkaldgldltvrpGetvalv 372 
                  +g++e+ +++++y +     +l+gl  tv pGe+v +v
  MMETSP1137-20121227|3670_1 1221 HGRVELRDLRLKYREGL-PDVLHGLTATVLPGEKVGVV 1257
                  5899999******9887.679**************988 PP

  == domain 5    score: 94.6 bits;  conditional E-value: 1.8e-29
   TIGR02204  424 alfaasvlenir.yGrpdasdeeveaaakaaeadefisklpeGydtllGergvtLsGGqkqriaiarailkdapiLLLdeatsaLdaeseqlvqqaleelmkgrttlviahrLatvlkadrivvldkGriveqGthaeLiak.ggLyar 570 
                  +lf++ v++n+   G  + +++++ aa +  + +  +++l    d ++ e g ++s Gq+q + iara+l    ++++deatsa+dae++ l+q+ + ++ ++ t + iahrL tvl+ad+i+vl+kG++ e G+ ++L+ak  g++++
  MMETSP1137-20121227|3670_1 1260 VLFSGTVRDNLDpLG--EHTAQAMWAALQRVHLAHAVRSL----DDEVAEDGANFSTGQRQLLCIARALLSRCSLVIMDEATSAVDAETDALIQRTIRSAFADATVITIAHRLNTVLDADKIMVLEKGELAEYGSPRDLMAKpRGIFRE 1402
                  567777777765133..33445566666666666666665....56899*******************************************************************************************972356655 PP

>> TIGR01846  type_I_sec_HlyB: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.1       1.5   1.1e+02     321     361 ..     297     337 ..     262     405 .. 0.61
   2 !   71.8   0.0   1.1e-22   8.1e-21     472     691 ..     525     733 ..     520     736 .. 0.85
   3 !    7.0   0.2    0.0045      0.32     196     360 ..     862    1027 ..     839    1050 .. 0.83
   4 !    8.9   0.0    0.0012     0.085     453     490 ..    1221    1258 ..    1205    1265 .. 0.91
   5 !  106.2   0.2   4.5e-33   3.2e-31     541     688 ..    1260    1403 ..    1257    1408 .. 0.85

  Alignments for each domain:
  == domain 1    score: -1.3 bits;  conditional E-value: 1.5
   TIGR01846 321 vesvtgietikasavepqfkrrWerqlaayvaasfkvtklg 361
                  e+++gi+ ik  a e  f  r +    a +aa  +vt l 
  MMETSP1137-20121227|3670_1 297 RETLSGIKVIKLHAWELAFATRIQASRGAELAAMRTVTWLR 337
                 46666677776666666666666555555544444444333 PP

  == domain 2    score: 71.8 bits;  conditional E-value: 1.1e-22
   TIGR01846 472 vlsnlsldikaGeviGivGpsGsGkst.ltkllqrlyvPekGrvlvdgvdlaladPawlrrqvgvvlqenvlfsrsirdnialakPa..iseekviaaaklaGahdfiselkqGyetevgekGaalsGGqrqrialaralvanPrilildeatsaldyeseavimrnl...reickgrtviiiahrlstvraadrilvlekGkivesGkheellakeglyaklyqq 691
                 vl+ + +   aGe++ +vG  G+Gks  l+ ll    +P                 ++lr + +   q  +++  s+rdni   +P      e+v+ a +l     +   l++   t +g++G+ lsGGqr r+alara+ a+  + +ld+  +a d    a++m+++   + + k++  i  +  l+++  ad+i vl +G++ esG++eel +++g +++l q 
  MMETSP1137-20121227|3670_1 525 VLRSVDMRASAGELVALVGAVGAGKSSfLSALLGD--MPCV------------GGSVALRGRCAYTAQTPFILGASVRDNILFDQPYdhERYERVLRACQLMPDLSL---LPERDFTLIGDRGVFLSGGQRARVALARAVYADAEVYLLDDPLAACDSRVAAALMEEVigpNGLLKDKLRILSTSNLESLGGADQIHVLRNGEVQESGTYEELARTDGAFSRLLQL 733
                 77888888888888888888888887623344432..2222............23567999999**********************61145699******9876655...55555699************************************************985556799***********************************************9875 PP

  == domain 3    score: 7.0 bits;  conditional E-value: 0.0045
   TIGR01846  196 sllrtylfahltsridvelgaklyrhllalPlsyfesrrvGdtvarv.releqirefltgsaltvvldllfvvvflavmffyspkltlvvlvslviylllsvivspilrkrvedkfeksaeaqsflvesvtgietikasavepqfkrrWerqlaayvaasfkvtkl 360 
                   ++r++l+  l    ++ l   l   ++  Pl++f+    G  + r  +el+++   l ++  t +  l  v + l+v+   sp + l ++    +yl+l    s+  r+    + +  a   + +  s+ g+ ti+a     +f ++ e  + a +++s ++  +
  MMETSP1137-20121227|3670_1  862 IVVRSRLVLGLGLAAGARLHDSLLARVIRAPLAFFDLTPRGRLLNRFsKELNTVDVALPSALQTYASTLASVATTLTVVCASSPPFALFLVPIASAYLALQKYYSSSSREIKRIESSARAPVVTHIASSLDGLSTIRAFDAGRKFVKQSEATVDASLRSSLTSALI 1027
                  467777777777778888888899999999****************7579999999998888888889999999**********99988888889999999999988885444445677888999***********************999999999999877655 PP

  == domain 4    score: 8.9 bits;  conditional E-value: 0.0012
   TIGR01846  453 kGaiefenirfrykedspevlsnlsldikaGeviGivG 490 
                  +G++e++++r++y+e  p+vl+ l+  + +Ge +G+v 
  MMETSP1137-20121227|3670_1 1221 HGRVELRDLRLKYREGLPDVLHGLTATVLPGEKVGVVX 1258
                  79**********************************95 PP

  == domain 5    score: 106.2 bits;  conditional E-value: 4.5e-33
   TIGR01846  541 vlfsrsirdnialakPaiseekviaaaklaGahdfiselkqGyetevgekGaalsGGqrqrialaralvanPrilildeatsaldyeseavimrnlreickgrtviiiahrlstvraadrilvlekGkivesGkheellak.eglyakl 688 
                  vlfs+++rdn+          +  +a   a  +  + +  +  + ev e Ga++s Gqrq + +aral++   ++i+deatsa+d+e++a+i+r +r+  ++ tvi+iahrl+tv +ad+i+vlekG+++e G+  +l+ak +g + ++
  MMETSP1137-20121227|3670_1 1260 VLFSGTVRDNLDPLGE-----HTAQAMWAALQRVHLAHAVRSLDDEVAEDGANFSTGQRQLLCIARALLSRCSLVIMDEATSAVDAETDALIQRTIRSAFADATVITIAHRLNTVLDADKIMVLEKGELAEYGSPRDLMAKpRGIFREM 1403
                  8899999999853322.....2222222223334456667889************************************************************************************************9988988877 PP

>> TIGR03796  NHLM_micro_ABC1: NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.3     0.073       5.3     299     396 ..     262     356 ..     232     388 .. 0.70
   2 !   60.2   0.1   3.4e-19   2.5e-17     491     710 .]     522     732 ..     517     732 .. 0.90
   3 !   12.4   0.3   9.7e-05     0.007     201     389 ..     852    1041 ..     829    1055 .. 0.83
   4 ?    2.8   0.0      0.08       5.8     475     511 ..    1221    1257 ..    1206    1260 .. 0.93
   5 !  111.8   0.5   8.1e-35   5.8e-33     563     709 ..    1260    1404 ..    1258    1405 .. 0.88

  Alignments for each domain:
  == domain 1    score: 2.9 bits;  conditional E-value: 0.073
   TIGR03796 299 aialaainvlalql.vsrkrvdanrrlqqdagklagvaiaglqsietlkAsglesdffsrwaGyqakllnaeqelgvatallsvlpelltsltsalilv 396
                 a+ +a++++    +  + + +++  +l+ +++kl   +++g+++   +k  + e  f +r++      l a++++   +a+lsv+   lt  t++++l 
  MMETSP1137-20121227|3670_1 262 AVIFAVLHINKRIAaATFRLQQKLLKLRDERAKLVRETLSGIKV---IKLHAWELAFATRIQASRGAELAAMRTVTWLRAILSVFSL-LTLKTAMTVLS 356
                 33444433333222022233445578888888888888888776...588999***********************99999998854.33333344332 PP

  == domain 2    score: 60.2 bits;  conditional E-value: 3.4e-19
   TIGR03796 491 eapliedfslslkpGqrvAlvGgsGsGkstiaklvaGlyepwsGeilfDgkpreeiprevlanslalvdqdivlfegtvrdnltlwdetipeedlvrAakDAaihdvilarpggyeaelaegganlsGGqrqRleiARaLvknPsiLilDEatsaLDaetEkaidenlr.r....RgctciivaHRLstiRdcdeiivlerGkvverGtHeellakegaYarLir 710
                 e+ +++ ++++ + G+ vAlvG+ G+Gks     + G    + G++++ g+              a+  q  ++++++vrdn+ l+d+   +e+ +r ++  ++  ++  +p+   + + + g  lsGGqr R+ +ARa+ ++  + +lD+  +a D+++  a++e++       +    i+ +  L ++  +d+i vl +G+v e Gt+eel++++ga++rL++
  MMETSP1137-20121227|3670_1 522 ERFVLRSVDMRASAGELVALVGAVGAGKSSFLSALLGDMPCVGGSVALRGR-------------CAYTAQTPFILGASVRDNI-LFDQPYDHERYERVLRACQLMPDLSLLPERDFTLIGDRGVFLSGGQRARVALARAVYADAEVYLLDDPLAACDSRVAAALMEEVIgPngllKDKLRILSTSNLESLGGADQIHVLRNGEVQESGTYEELARTDGAFSRLLQ 732
                 667889999********************9988888999999999998876.............467789999*********9.9*****************************99******************************************998888876541311114456799999**************************************86 PP

  == domain 3    score: 12.4 bits;  conditional E-value: 9.7e-05
   TIGR03796  201 lltallqvvltllqlallrrleiklavassarflwhilrlPveffaqRaageiasRvqln.dkvaellsgqlattvldlvlvvfyalvmllydlvlaliaialaainvlalqlvsrkrvdanrrlqqdagklagvaiaglqsietlkAsglesdffsrwaGyqakllnaeqelgvatallsvlpelltsl 389 
                  +l  l+ ++  +++++l+  l    + +   ++l +++r P  ff+    g + +R + + + v  +l   l t +  l  v + + v+++ ++ +al  + +a   +++ ++ s +  + +r   + ++ + +   ++l  ++t++A  +  +f+++   +   +l+++ +  + + +l++  e+l ++
  MMETSP1137-20121227|3670_1  852 ALWSLVAAAAIVVRSRLVLGLGLAAGARLHDSLLARVIRAPLAFFDLTPRGRLLNRFSKElNTVDVALPSALQTYASTLASVATTLTVVCASSPPFALFLVPIASAYLALQKYYSSSSREIKRIESSARAPVVTHIASSLDGLSTIRAFDAGRKFVKQSEATVDASLRSSLTSALINCWLGLRLEMLGAF 1041
                  55556666666777888888888888889999************************9887366777899999999999999999999***********99999998888888887777777777777889999999999**********999***99999999999999999888888887766666554 PP

  == domain 4    score: 2.8 bits;  conditional E-value: 0.08
   TIGR03796  475 sGkvelrnvtfgysaleapliedfslslkpGqrvAlv 511 
                  +G+velr+++  y +  + ++++++ ++ pG++v +v
  MMETSP1137-20121227|3670_1 1221 HGRVELRDLRLKYREGLPDVLHGLTATVLPGEKVGVV 1257
                  69********************************988 PP

  == domain 5    score: 111.8 bits;  conditional E-value: 8.1e-35
   TIGR03796  563 vlfegtvrdnltlwdetipeedlvrAakDAaihdvilarpggyeaelaegganlsGGqrqRleiARaLvknPsiLilDEatsaLDaetEkaidenlrrR..gctciivaHRLstiRdcdeiivlerGkvverGtHeella.kegaYarLi 709 
                  vlf+gtvrdnl    e    +++  A++   +  ++      ++ e+ae+gan+s Gqrq l iARaL ++ s++i+DEatsa+Daet+  i++ +r      t+i +aHRL t+ d+d+i+vle+G++ e G+  +l+a   g +++++
  MMETSP1137-20121227|3670_1 1260 VLFSGTVRDNLDPLGEHT-AQAMWAALQRVHLAHAVR----SLDDEVAEDGANFSTGQRQLLCIARALLSRCSLVIMDEATSAVDAETDALIQRTIRSAfaDATVITIAHRLNTVLDADKIMVLEKGELAEYGSPRDLMAkPRGIFREMV 1404
                  79*********8666554.456888888887777776....57889***************************************************853378**********************************9983467777766 PP

>> TIGR03375  type_I_sec_LssB: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   1.4      0.65        47     279     361 ..     246     328 ..     240     362 .. 0.75
   2 !   81.7   0.0   1.2e-25   8.3e-24     479     687 ..     522     719 ..     518     724 .. 0.91
   3 ?    4.5   0.1     0.025       1.8     207     367 ..     863    1025 ..     848    1042 .. 0.68
   4 !   10.5   0.0   0.00038     0.027     456     499 ..    1214    1257 ..    1205    1260 .. 0.89
   5 !   83.3   0.2   3.7e-26   2.7e-24     551     690 ..    1260    1394 ..    1257    1398 .. 0.92

  Alignments for each domain:
  == domain 1    score: -0.2 bits;  conditional E-value: 0.65
   TIGR03375 279 llvialiggplvlvplvavplvllvglllqkplsklaeeslresaqknallveslegletikalnaesrlqkkWeqvvaalak 361
                 +++++   gp v++ l+++ +vl ++  + +   +l ++ l+   ++  l+ e+l+g++ ik+ + e  + ++ + + +a   
  MMETSP1137-20121227|3670_1 246 IFLLWQEIGPSVFPGLAVIFAVLHINKRIAAATFRLQQKLLKLRDERAKLVRETLSGIKVIKLHAWELAFATRIQASRGAELA 328
                 5555555566678888888888888888888889999999***********************99999998888776655444 PP

  == domain 2    score: 81.7 bits;  conditional E-value: 1.2e-25
   TIGR03375 479 ekaaLknvslkikpGekvaiiGriGsGKstllklllglyepteGsvlldgvdirqidpadlrrnigyvpqdvtLfyGtlrdNialgapaaedeellraaelaGvtefvkkhpkGldlqigerGesLSgGQrqavalaRallkdppillLDEPtsalDnsseekllerL...kelladkTlvlvtHrtslLelvdriivldkGrivadGpkde 687
                 e+ +L++v ++ ++Ge va++G +G+GKs+ l  llg +    Gsv              lr + +y +q + ++ +++rdNi +++p ++ e+  r++++  +   ++  p+   + ig+rG  LSgGQr  valaRa++ d +++lLD+P +a D++  + l+e++   + ll+dk  +l+t   + L  +d+i vl++G +   G+ +e
  MMETSP1137-20121227|3670_1 522 ERFVLRSVDMRASAGELVALVGAVGAGKSSFLSALLGDMPCVGGSVA-------------LRGRCAYTAQTPFILGASVRDNILFDQP-YDHERYERVLRACQLMPDLSLLPERDFTLIGDRGVFLSGGQRARVALARAVYADAEVYLLDDPLAACDSRVAAALMEEVigpNGLLKDKLRILSTSNLESLGGADQIHVLRNGEVQESGTYEE 719
                 566899**************************************996.............6889***********************9.55666666777777777777788888899************************************************9966668999****************************99998776 PP

  == domain 3    score: 4.5 bits;  conditional E-value: 0.025
   TIGR03375  207 llRsylldvagkkvdlilsaklfervlglrlea.rpasvGsfasql.refesvrdfltsatltalvDLpfvllfllvialiggplvlvplvavplvllvglllqkplsklaeeslr.esaqkn...allveslegletikalnaesrlqkkWeqvvaalakvslklr 367 
                  ++Rs+l+  +g  +  +l ++l++rv++  l+  + +  G + +++ +e+++v   l sa  t    L+ v   l+v+   ++p +l  + ++ +     l+lqk  s++++e  r es+++     ++  sl+gl ti+a  a +++ k+ e +v a+ ++sl + 
  MMETSP1137-20121227|3670_1  863 VVRSRLVLGLGLAAGARLHDSLLARVIRAPLAFfDLTPRGRLLNRFsKELNTVDVALPSALQTYASTLASVATTLTVVCASSPPFALFLVPIASA----YLALQKYYSSSSREIKRiESSARApvvTHIASSLDGLSTIRAFDAGRKFVKQSEATVDASLRSSLTSA 1025
                  66777777777777777777777777777776424566677777664677777777777777777777777777777777777754433333222....244555555555554442344444111567789************************99998887765 PP

  == domain 4    score: 10.5 bits;  conditional E-value: 0.00038
   TIGR03375  456 llsreklkGeielknvsfkYpeeekaaLknvslkikpGekvaii 499 
                   + +   +G++el+++++kY+e    +L+ ++ ++ pGekv+++
  MMETSP1137-20121227|3670_1 1214 CVGEYAPHGRVELRDLRLKYREGLPDVLHGLTATVLPGEKVGVV 1257
                  56666779**********************************97 PP

  == domain 5    score: 83.3 bits;  conditional E-value: 3.7e-26
   TIGR03375  551 tLfyGtlrdNialgapaaedeellraaelaGvtefvkkhpkGldlqigerGesLSgGQrqavalaRallkdppillLDEPtsalDnsseekllerLkelladkTlvlvtHrtslLelvdriivldkGrivadGpkdevle 690 
                  +Lf+Gt+rdN+    +  + +++ +a++++ + + v+    +ld  ++e+G+++S GQrq++ +aRall+  +++++DE tsa+D+++++ + ++++++ ad T++ ++Hr + +  +d+i+vl+kG +   G+   +++
  MMETSP1137-20121227|3670_1 1260 VLFSGTVRDNLDPLGE-HTAQAMWAALQRVHLAHAVR----SLDDEVAEDGANFSTGQRQLLCIARALLSRCSLVIMDEATSAVDAETDALIQRTIRSAFADATVITIAHRLNTVLDADKIMVLEKGELAEYGSPRDLMA 1394
                  7**********97665.467899*****998877775....699********************************************************************99999*************9998777665 PP

>> TIGR02857  CydD: thiol reductant ABC exporter, CydD subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  111.3   0.1   1.8e-34   1.3e-32     334     527 ..     521     704 ..     466     706 .. 0.85
   2 ?   -2.6   0.0         6   4.3e+02     320     354 ..    1222    1257 ..    1203    1260 .. 0.83
   3 !   74.4   2.4   2.7e-23   1.9e-21     406     529 .]    1260    1378 ..    1256    1378 .. 0.93

  Alignments for each domain:
  == domain 1    score: 111.3 bits;  conditional E-value: 1.8e-34
   TIGR02857 334 rk.palkevsltvepgelvalvGaSGaGKstllklllgfvepteGailvngaelaeldadswrkqiawvpQkPllfegtvaenirlarkdaseaevkealeragldelvkalpqgleteiGergagLSgGqrqRlaLArallrdapllllDEPtahLDaeteaevleal...relaegrtvllvaHrlalaeladkiv 527
                 r+  +l++v++++++gelvalvGa GaGKs+ l++llg ++  +G++++ g+             +a+ +Q+P+++ ++v++ni + +++ +e   +++l++++l+  ++ lp+   t iG+rg  LSgGqr R+aLAra + da++ llD P a+ D++ +a+++e++   + l++ +  +l + +l+++  ad+i 
  MMETSP1137-20121227|3670_1 521 RErFVLRSVDMRASAGELVALVGAVGAGKSSFLSALLGDMPCVGGSVALRGR-------------CAYTAQTPFILGASVRDNILFDQPYDHER-YERVLRACQLMPDLSLLPERDFTLIGDRGVFLSGGQRARVALARAVYADAEVYLLDDPLAACDSRVAAALMEEVigpNGLLKDKLRILSTSNLESLGGADQIH 704
                 335699***********************************99999998887.............9***********************98776.9*********************************************************************999845556778888888888888888888775 PP

  == domain 2    score: -2.6 bits;  conditional E-value: 6
   TIGR02857  320 sslelenvsvay.egrkpalkevsltvepgelvalv 354 
                   ++el+++ ++y eg  ++l+++ +tv pge+v++v
  MMETSP1137-20121227|3670_1 1222 GRVELRDLRLKYrEGLPDVLHGLTATVLPGEKVGVV 1257
                  38999*******77777***************9986 PP

  == domain 3    score: 74.4 bits;  conditional E-value: 2.7e-23
   TIGR02857  406 llfegtvaenir.larkdaseaevkealeragldelvkalpqgleteiGergagLSgGqrqRlaLArallrdapllllDEPtahLDaeteaevlealrelaegrtvllvaHrlalaeladkivvl 529 
                  +lf+gtv++n+  l+++ a+  ++ +al+r++l++ v++l    + e+ e+ga+ S Gqrq l +Arall+ ++l+++DE t+++Daet+a +++++r+++  +tv+ +aHrl+++ +adki+vl
  MMETSP1137-20121227|3670_1 1260 VLFSGTVRDNLDpLGEHTAQ--AMWAALQRVHLAHAVRSL----DDEVAEDGANFSTGQRQLLCIARALLSRCSLVIMDEATSAVDAETDALIQRTIRSAFADATVITIAHRLNTVLDADKIMVL 1378
                  79*********966666554..5799*******9988888....6999**************************************************************************986 PP

>> TIGR02868  CydC: thiol reductant ABC exporter, CydC subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   4.5       0.3        22      82     255 ..     167     357 ..     163     391 .. 0.75
   2 !  101.0   0.4   1.9e-31   1.4e-29     308     515 ..     478     676 ..     466     691 .. 0.82
   3 !    9.6   3.4   0.00092     0.066      91     239 ..     883    1030 ..     866    1108 .. 0.83
   4 ?    3.2   0.0      0.08       5.8     332     367 ..    1221    1257 ..    1170    1260 .. 0.85
   5 !   67.3   1.4   3.2e-21   2.3e-19     420     530 .]    1261    1366 ..    1258    1366 .. 0.95

  Alignments for each domain:
  == domain 1    score: 1.3 bits;  conditional E-value: 0.3
   TIGR02868  82 lrslgelRvrv....YerLaraalallarlrrGdlLarlvaDvdalqdllv..R..vivPl..vvAlv...valaavaliallsvaaalvlaaallvalvvaplvslraars..aeqalarlrselaaqlldllegaaelvvaGaleavlaqveeaereltraekraaaaealga..altllaaGlavlla 255
                 +r+  +lR++v    Y+++ r +++++ + ++G++ + +++D    +dl+      +  Pl  + A++     l +va+i+ll  +++  +  +l+v+++v+ + ++ aa +   +q+l +lr e a+ ++++l+g + ++      a+ +++++   + ++a +   +++a+ +  +l +l ++++vl+a
  MMETSP1137-20121227|3670_1 167 FRTGLRLRAAVvgiaYRKMLRLSPTARIASSSGEITNLMGSDAARFADLTPylHalWFAPLqaIXAFLpenHXLQVVAAIFLLWQEIGPSVFPGLAVIFAVLHINKRIAAATfrLQQKLLKLRDERAKLVRETLSGIKVIKLHAWELAFATRIQASRGAELAAMRTVTWLRAILSvfSLLTLKTAMTVLSA 357
                 555555665544444********************************996411421345642245555322357788999999999999999999998888776655554431146777789999999999999999999999999999999988888888888888888888773344444455556555 PP

  == domain 2    score: 101.0 bits;  conditional E-value: 1.9e-31
   TIGR02868 308 eevldakvevaeasapaaeaaas..ekptlelrd.lsvsypgaee..vlkgvsldlepGervavvGasGaGKstLlallaglldplkGevtldgvsvaslsesevrrvvsvlaqdaHlFdttvreNlrlarpdatdeellaaLervgLadwlraLpdGldtklgeggarlSGGerqRlalARaLladapvllLDEPtehLDaeteeelledLl 515
                 +e+++a+ ev  ++++aa++ a+  + ++  +++ l  +  ga e  vl+ v++ +++Ge va+vGa GaGKs  l++l+g ++   G+v+l g             + +++aq + +  ++vr+N+++ +p  + e  +++L++ +L   l  Lp+   t +g++g +lSGG+r R+alARa+ ada+v lLD P +  D  ++++l+e+++
  MMETSP1137-20121227|3670_1 478 SELAEAEEEVSGSHQAAAAHDAHraHGADDAAEHgLVEREGGARErfVLRSVDMRASAGELVALVGAVGAGKSSFLSALLGDMPCVGGSVALRG-------------RCAYTAQTPFILGASVRDNILFDQP-YDHERYERVLRACQLMPDLSLLPERDFTLIGDRGVFLSGGQRARVALARAVYADAEVYLLDDPLAACDSRVAAALMEEVI 676
                 45555552222222222222211233333334430444444444459********************************************999.............889*******************988.5778899*********************************************************************9875 PP

  == domain 3    score: 9.6 bits;  conditional E-value: 0.00092
   TIGR02868   91 rvYerLaraalallarlrrGdlLarlvaDvdalqdllvRvivPlvvAlvvalaavaliallsvaaalvlaaallvalvvaplvslraarsaeqalarlrselaaqlldllegaaelvvaGaleavlaqveeaereltraekraaaaeal 239 
                   + +r+ ra la+     rG lL+r+++  ++++  l  +++  ++ l+ ++ +  ++ + s+++al l+ ++ +  +++      ++r+ ++ +  +r+ +  ++++ l+g+++++++ a  ++++q e++ ++++r +  +a  + +
  MMETSP1137-20121227|3670_1  883 SLLARVIRAPLAFFDLTPRGRLLNRFSKELNTVDVALPSALQTYASTLASVATTLTVVCASSPPFALFLVPIASAY-LALQKYYSSSSREIKRIESSARAPVVTHIASSLDGLSTIRAFDAGRKFVKQSEATVDASLRSSLTSALINCW 1030
                  56678888999999999*************************9999999999999999999999999998776655.555566667899999************************************999888777766666655554 PP

  == domain 4    score: 3.2 bits;  conditional E-value: 0.08
   TIGR02868  332 kptlelrdlsvsypgaee.vlkgvsldlepGervavv 367 
                  + ++elrdl+ +y ++ + vl+g+++++ pGe+v vv
  MMETSP1137-20121227|3670_1 1221 HGRVELRDLRLKYREGLPdVLHGLTATVLPGEKVGVV 1257
                  66899********999988***************997 PP

  == domain 5    score: 67.3 bits;  conditional E-value: 3.2e-21
   TIGR02868  420 lFdttvreNlrlarpdatdeellaaLervgLadwlraLpdGldtklgeggarlSGGerqRlalARaLladapvllLDEPtehLDaeteeelledLlaaeegrtvvlvthrl 530 
                  lF+ tvr+Nl    ++ t + ++aaL+rv La+ +r+    ld ++ e+ga +S G+rq l +ARaLl+   ++++DE t  +Daet + + +++++a ++ tv+ ++hrl
  MMETSP1137-20121227|3670_1 1261 LFSGTVRDNLD-PLGEHTAQAMWAALQRVHLAHAVRS----LDDEVAEDGANFSTGQRQLLCIARALLSRCSLVIMDEATSAVDAETDALIQRTIRSAFADATVITIAHRL 1366
                  8*********7.345667799****************....888*****************************************************************96 PP

>> TIGR01193  bacteriocin_ABC: ABC-type bacteriocin transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.3   0.0     8e-19   5.7e-17     489     706 ..     525     731 ..     517     733 .. 0.83
   2 !    8.7   0.0    0.0016      0.12     236     373 ..     885    1023 ..     864    1029 .. 0.83
   3 !   71.9   0.0   1.2e-22   8.5e-21     558     707 ..    1260    1405 ..    1256    1406 .. 0.89

  Alignments for each domain:
  == domain 1    score: 59.3 bits;  conditional E-value: 8e-19
   TIGR01193 489 vledislkikknekitlvGlsGsGkstlakllvkffqaesGeillngkslkdidkhelrqlinylPqePfifsGsilenlllgakenvsqeeikkaveiaeikddieklplGyqtelseeassisgGqkqrlalarallsdskvlildestsnldlltekkivenll....klkdktiifvahrlsvakksdkiivldeGkiieqGshkellkenGfyasli 706
                 vl  ++++ ++ e ++lvG  G+Gks++   l++       ++   g s       +lr   +y  q Pfi+  s+ +n+l+++  +   e+ +++++  ++  d+  lp    t + + +  +sgGq+ r+alara+ +d++v++ld+  +  d  +   ++e+++     lkdk  i+ +  l+    +d+i vl +G++ e+G+++el +++G +++l+
  MMETSP1137-20121227|3670_1 525 VLRSVDMRASAGELVALVGAVGAGKSSFLSALLG-------DMPCVGGS------VALRGRCAYTAQTPFILGASVRDNILFDQPYDH--ERYERVLRACQLMPDLSLLPERDFTLIGDRGVFLSGGQRARVALARAVYADAEVYLLDDPLAACDSRVAAALMEEVIgpngLLKDKLRILSTSNLESLGGADQIHVLRNGEVQESGTYEELARTDGAFSRLL 731
                 7788888888888888888888888875555544.......44333333......369999********************9876544..44445555555678*********************************************9999998877777777774333599********************************************9997 PP

  == domain 2    score: 8.7 bits;  conditional E-value: 0.0016
   TIGR01193  236 ikhlfelPmsffstrrvGeivsrftdaskiidalastilslfldlsilvivglvlvlqniklfllslvaiP.vyaviiilfkktfeklnkdameanavlnssiiedlnGietiksltseeerykkidsefadylekslk 373 
                  +  ++  P++ff     G ++ rf+   + +d      l  +      v+++l +v   +  f l lv i  +y  +   +  + +++++ +  a a + + i  +l+G++ti+++ +  +  k+ +      l++sl+
  MMETSP1137-20121227|3670_1  885 LARVIRAPLAFFDLTPRGRLLNRFSKELNTVDVALPSALQTYASTLASVATTLTVVCASSPPFALFLVPIAsAYLALQKYYSSSSREIKRIESSARAPVVTHIASSLDGLSTIRAFDAGRKFVKQSEATVDASLRSSLT 1023
                  5678899******************9999999665566777777777888999999999999*99999986256666666777777777777888899999***************99999999988888888888776 PP

  == domain 3    score: 71.9 bits;  conditional E-value: 1.2e-22
   TIGR01193  558 fifsGsilenlllgakenvsqeeikkaveiaeikddieklplGyqtelseeassisgGqkqrlalarallsdskvlildestsnldlltekkivenll.klkdktiifvahrlsvakksdkiivldeGkiieqGshkellke.nGfyaslih 707 
                  ++fsG++ +nl  +   + + + +++a++ + + + ++     ++ e++e++++ s+Gq+q l++aralls + ++i+de+ts +d  t+  i   +   + d t+i +ahrl+    +dki+vl++G++ e Gs ++l+++ +G +++++h
  MMETSP1137-20121227|3670_1 1260 VLFSGTVRDNL--DPLGEHTAQAMWAALQRVHLAHAVRS----LDDEVAEDGANFSTGQRQLLCIARALLSRCSLVIMDEATSAVDAETDALIQRTIRsAFADATVITIAHRLNTVLDADKIMVLEKGELAEYGSPRDLMAKpRGIFREMVH 1405
                  68999999997..45556678899999999998888876....5789****************************************999887777642589*************************************9764799999987 PP

>> TIGR01842  type_I_sec_PrtD: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.4       2.2   1.5e+02     114     194 ..     224     307 ..     144     357 .. 0.66
   2 !   71.7   0.6   1.3e-22   9.6e-21     329     540 ..     521     720 ..     511     723 .. 0.87
   3 !   75.0   0.2   1.3e-23   9.4e-22     403     542 ..    1261    1394 ..    1246    1395 .. 0.87

  Alignments for each domain:
  == domain 1    score: -1.6 bits;  conditional E-value: 2.2
   TIGR01842 114 FltgtgliaffDlPwlpiyllvvfllhpylGllalvgavvlvalallneaatkkklkeateasi...kanklldsalrnaevie 194
                 F   +++ af+        ++ +fll   +G  ++ g  v++a+  +n+++ +++++  +++     ++ kl+ ++l  ++vi+
  MMETSP1137-20121227|3670_1 224 FAPLQAIXAFLPENHXLQVVAAIFLLWQEIGPSVFPGLAVIFAVLHINKRIAAATFRLQQKLLKlrdERAKLVRETLSGIKVIK 307
                 44556777777777777778889999999*******************999999887666554400044444555555555555 PP

  == domain 2    score: 71.7 bits;  conditional E-value: 1.3e-22
   TIGR01842 329 ekkktlkgisfalkaGealaiiGpsgsGkssLarllvGvwlpasGsvrlDgadlkqwdretlGksiGYlPqdveLfeGtvaeniaRfeenadaekvieaaklagvhelilrlpkGYdteigegGaaLsgGqrqRiaLaRalygdPklvvLDePnanLDeeGeqalakalkelk..arkitvvvithrpsllelvdkilvlkdGalkafGereev 540
                  ++ +l+ ++++ +aGe +a++G+ g+Gkss    l+G ++++ Gsv l g                Y  q   ++  +v +ni  f++  d e+     ++ +    +  lp+   t ig++G  LsgGqr R+aLaRa+y d  + +LD+P a  D++  +al++ ++      +    ++ t   + l  +d+i vl++G++++ G+ ee+
  MMETSP1137-20121227|3670_1 521 RERFVLRSVDMRASAGELVALVGAVGAGKSSFLSALLGDMPCVGGSVALRGR-------------CAYTAQTPFILGASVRDNIL-FDQPYDHERYERVLRACQLMPDLSLLPERDFTLIGDRGVFLSGGQRARVALARAVYADAEVYLLDDPLAACDSRVAAALMEEVIGPNglLKDKLRILSTSNLESLGGADQIHVLRNGEVQESGTYEEL 720
                 456799*****************************************99874.............67888888899999****96.7777777766666666666666677999999*************************************************9987543225677788999999*********************99886 PP

  == domain 3    score: 75.0 bits;  conditional E-value: 1.3e-23
   TIGR01842  403 LfeGtvaeniaRfeenadaekvieaaklagvhelilrlpkGYdteigegGaaLsgGqrqRiaLaRalygdPklvvLDePnanLDeeGeqalakalkelkarkitvvvithrpsllelvdkilvlkdGalkafGereevlk 542 
                  Lf+Gtv +n+  ++e  +a+++ +a     vh  +++  +  d e++e+Ga+ s+Gqrq + +aRal     lv++De  + +D+e ++ + + + ++  + +tv++i+hr + +  +dki+vl++G+l+++G+ +++++
  MMETSP1137-20121227|3670_1 1261 LFSGTVRDNLDPLGE-HTAQAMWAAL--QRVH--LAHAVRSLDDEVAEDGANFSTGQRQLLCIARALLSRCSLVIMDEATSAVDAETDALIQRTIRSA-FADATVITIAHRLNTVLDADKIMVLEKGELAEYGSPRDLMA 1394
                  9**************.8888887764..4555..3444456789******************************************998888888776.5689******************************9988876 PP

>> TIGR01192  chvA: glucan exporter ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.2   0.0   7.2e-18   5.2e-16     352     568 ..     527     732 ..     518     744 .. 0.83
   2 ?    2.9   0.7       0.1       7.3      65     213 ..     854    1002 ..     811    1049 .. 0.85
   3 !   75.4   0.2   1.1e-23   7.8e-22     443     570 ..    1279    1407 ..    1259    1410 .] 0.87

  Alignments for each domain:
  == domain 1    score: 56.2 bits;  conditional E-value: 7.2e-18
   TIGR01192 352 rdvsfeakagqtvaivgptgagkttlinllqrvydpksgqilidgvdiatvtreslrksiatvfqdagllnrsirenirlgr..edatdeevveaakaaaasdfiekrlkgydtlvgergnrlsggerqrlaiarailknapilvldeatsaldvetearvkdai...dalrknrttfiiahrlstvreadlvlfldqgrliekgsfdeliqkdgrfakllr 568
                 r v ++a ag+ va+vg  gagk++++  l        g +   g  +      +lr   a   q   +l  s+r+ni + +  ++   e v+ a++      ++ +r     tl+g+rg  lsgg+r r+a+ara+  +a + +ld+  +a d    a + + +   + l k++  ++ +  l ++  ad +  l +g + e g+++el++ dg f +ll+
  MMETSP1137-20121227|3670_1 527 RSVDMRASAGELVALVGAVGAGKSSFLSALL-------GDMPCVGGSV------ALRGRCAYTAQTPFILGASVRDNILFDQpyDHERYERVLRACQLMPDLSLLPER---DFTLIGDRGVFLSGGQRARVALARAVYADAEVYLLDDPLAACDSRVAAALMEEVigpNGLLKDKLRILSTSNLESLGGADQIHVLRNGEVQESGTYEELARTDGAFSRLLQ 732
                 678999******************9988775.......3333333332......58888999999999**********997622334445566666655555555544...469*****************************************9988876655365689*************************************************97 PP

  == domain 2    score: 2.9 bits;  conditional E-value: 0.1
   TIGR01192   65 fgvfniiayvlvareadrlahgrratllteafgriismplswhsqrgtsnalhtllrasetlfglwlefmrqhlatfvallllipvalamdlrlslvlvvlgivyvliaklvmsrtkegqaaveeyyhsvfkhvsdsisnvsvvhsynr 213 
                  + ++   a v+ +r    l     a l +  ++r+i  pl++ ++    + l  + +  +t+       ++++ +t+ ++   + v  a    ++l lv ++ +y+ + k+  s ++e +         v +h++ s+  +s +++++ 
  MMETSP1137-20121227|3670_1  854 WSLVAAAAIVVRSRLVLGLGLAAGARLHDSLLARVIRAPLAFFDLTPRGRLLNRFSKELNTVDVALPSALQTYASTLASVATTLTVVCASSPPFALFLVPIASAYLALQKYYSSSSREIKRIESSARAPVVTHIASSLDGLSTIRAFDA 1002
                  45555566667777777776777777888899*************999999999999999998888889999999999999999999999999************************999888888899************99998865 PP

  == domain 3    score: 75.4 bits;  conditional E-value: 1.1e-23
   TIGR01192  443 eaakaaaasdfiekrlkgydtlvgergnrlsggerqrlaiarailknapilvldeatsaldvetearvkdaidalrknrttfiiahrlstvreadlvlfldqgrliekgsfdeliqk.dgrfakllras 570 
                  +a  aa  +  + + +++ d  v e g+++s g+rq l iara+l    ++++deatsa+d et+a ++ +i +   + t + iahrl tv +ad ++ l++g l e gs ++l+ k  g f ++++as
  MMETSP1137-20121227|3670_1 1279 QAMWAALQRVHLAHAVRSLDDEVAEDGANFSTGQRQLLCIARALLSRCSLVIMDEATSAVDAETDALIQRTIRSAFADATVITIAHRLNTVLDADKIMVLEKGELAEYGSPRDLMAKpRGIFREMVHAS 1407
                  4445555566777889999********************************************************************************************999876368888888776 PP

>> TIGR00972  3a0107s01c2: phosphate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.9   0.0   0.00032     0.023      15      47 ..     524     556 ..     519     578 .. 0.85
   2 !   38.8   0.0   1.9e-12   1.3e-10      79     230 ..     568     720 ..     564     726 .. 0.78
   3 !   59.3   0.1     1e-18   7.4e-17     124     235 ..    1284    1397 ..    1269    1403 .. 0.89

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 0.00032
   TIGR00972  15 ealkdvnleikknkvtaliGpsGcGkstllrsl 47 
                  +l+ v++  ++ +++al+G  G+Gks++l +l
  MMETSP1137-20121227|3670_1 524 FVLRSVDMRASAGELVALVGAVGAGKSSFLSAL 556
                 5899**************************986 PP

  == domain 2    score: 38.8 bits;  conditional E-value: 1.9e-12
   TIGR00972  79 elrkkvGmvfqkpnpfpmsiydnvayglrlkgikdkkeldeiveesLkkaalwdevk.dklkksalsLsGGqqqrlciaralavePevlLlDePtsaLDpia.tekieeli..qeLkkkytivivthnmqqaarvsdktaffleGelveegeteqi 230
                 +lr +     q+p     s+ dn+ +       +  ++l+  + + + + +l  e   + + + ++ LsGGq+ r+++ara+  + ev LlD+P +a D+   ++ +ee+i  + L k+   ++ t n++     +d++ ++ +Ge+ e+g+ e++
  MMETSP1137-20121227|3670_1 568 ALRGRCAYTAQTPFILGASVRDNILFDQPYDHERYERVLR--ACQLMPDLSLLPERDfTLIGDRGVFLSGGQRARVALARAVYADAEVYLLDDPLAACDSRVaAALMEEVIgpNGLLKDKLRILSTSNLES-LGGADQIHVLRNGEVQESGTYEEL 720
                 5677777777777777899999999998887656666654..4456666666655541556899***********************************97515667899854456666667789***986.5679***************98887 PP

  == domain 3    score: 59.3 bits;  conditional E-value: 1e-18
   TIGR00972  124 sLkkaalwdevk...dklkksalsLsGGqqqrlciaralavePevlLlDePtsaLDpiatekieeliqeLkkkytivivthnmqqaarvsdktaffleGelveegeteqifekpk 235 
                  +L+++ l  +v+   d++ + + + s Gq+q lciaral  +  ++++De tsa+D+++ + i+ +i++   + t++ + h ++     +dk++++ +Gel e+g++++++ kp+
  MMETSP1137-20121227|3670_1 1284 ALQRVHLAHAVRsldDEVAEDGANFSTGQRQLLCIARALLSRCSLVIMDEATSAVDAETDALIQRTIRSAFADATVITIAHRLNTVLD-ADKIMVLEKGELAEYGSPRDLMAKPR 1397
                  56666666555333399999***************************************************************98776.8*********************9997 PP

>> TIGR03265  PhnT2: putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.5   0.0   0.00019     0.013      19      66 ..     525     572 ..     514     581 .. 0.87
   2 !   45.3   0.0     2e-14   1.4e-12     135     223 ..     633     721 ..     629     727 .. 0.87
   3 !   44.1   0.1   4.6e-14   3.3e-12     109     230 ..    1282    1400 ..    1258    1404 .. 0.84

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 0.00019
   TIGR03265  19 alkdislsvkkgelvclLGPsGCGkttLLriiaGLekqdaGaillggr 66 
                 +l+++++  ++gelv+l+G  G Gk+++L ++ G      G+++l gr
  MMETSP1137-20121227|3670_1 525 VLRSVDMRASAGELVALVGAVGAGKSSFLSALLGDMPCVGGSVALRGR 572
                 799****************************99987778888888776 PP

  == domain 2    score: 45.3 bits;  conditional E-value: 2e-14
   TIGR03265 135 lsGGqqqrvaLaralalsPglLLLDePlsaLDakvrekLreelkklqrklgvttimvthdqeealslaDrivvmnkgkieqvgtPeeiY 223
                 lsGGq+ rvaLara+    ++ LLD+Pl+a D++v + L ee+      l+    +      e+l  aD+i v+ +g+++  gt ee+ 
  MMETSP1137-20121227|3670_1 633 LSGGQRARVALARAVYADAEVYLLDDPLAACDSRVAAALMEEVIGPNGLLKDKLRILSTSNLESLGGADQIHVLRNGEVQESGTYEELA 721
                 9******************************************876655554444445566789********************99985 PP

  == domain 3    score: 44.1 bits;  conditional E-value: 4.6e-14
   TIGR03265  109 eevaerveelLelvglsgseekyPgqlsGGqqqrvaLaralalsPglLLLDePlsaLDakvrekLreelkklqrklgvttimvthdqeealslaDrivvmnkgkieqvgtPeeiYeqPatkf 230 
                    + +rv+ + ++  l++      + +s Gq+q + +aral  + +l+++De  sa+Da   + +++ +++      v  i ++h  +  l  aD+i+v++kg++  +g+P+++  +P+  f
  MMETSP1137-20121227|3670_1 1282 WAALQRVHLAHAVRSLDDEVAEDGANFSTGQRQLLCIARALLSRCSLVIMDEATSAVDAETDALIQRTIRSAFADATV--ITIAHRLNTVL-DADKIMVLEKGELAEYGSPRDLMAKPRGIF 1400
                  45668888888888899988999999********************************************98876555..55689887666.59************************9877 PP

>> TIGR03258  PhnT: 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.8   1.0   2.3e-17   1.6e-15      21     227 ..     523     720 ..     516     731 .. 0.85
   2 !   42.1   0.3   1.6e-13   1.1e-11     117     235 ..    1286    1400 ..    1261    1409 .. 0.86

  Alignments for each domain:
  == domain 1    score: 54.8 bits;  conditional E-value: 2.3e-17
   TIGR03258  21 rvvlddlsleieaGellallGksGsGkttllravaGfvkadGGrllvadr.dlthlppykrnlallvqnyalfphlkveenvafGlrark.qsk.aliaervadalklvqlsdaaarlpaqlsGGqqqrvalaralvvrpdvllldeplsaldaqlrasvveelkalhrelpeltvlyvthdrdealvladkillmkeGslialGetral 227
                 r vl  + +   aGel+al+G  G+Gk++ l a+ G +   GG +++ +r   t   p+   l+  v++  lf     +e     lra + +++ +l+ er         ++d +      lsGGq+ rvalara+  + +v lld+pl+a d+++ a+++ee+      l +   +  t  + e+l  ad+i ++++G++ + G+ ++l
  MMETSP1137-20121227|3670_1 523 RFVLRSVDMRASAGELVALVGAVGAGKSSFLSALLGDMPCVGGSVALRGRcAYTAQTPFI--LGASVRDNILFDQPYDHERYERVLRACQlMPDlSLLPER-----DFTLIGDRGV----FLSGGQRARVALARAVYADAEVYLLDDPLAACDSRVAAALMEEVIGPNGLLKDKLRILST-SNLESLGGADQIHVLRNGEVQESGTYEEL 720
                 789999*****************************************9982467778885..78889999****99999999999**96525541344454.....3344678775....69******************************************9988888764444444.56899*******************98877 PP

  == domain 2    score: 42.1 bits;  conditional E-value: 1.6e-13
   TIGR03258  117 ervadalklvqlsdaaarlpaqlsGGqqqrvalaralvvrpdvllldeplsaldaqlrasvveelkalhrelpeltvlyvthdrdealvladkillmkeGslialGetralydapadrf 235 
                  +rv  a  +  l d  a+  a++s Gq+q + +aral  r  ++++de  sa+da+  a ++  +++    + + tv+ ++h   +++  adki+++ +G+l+++G +r+l  +p   f
  MMETSP1137-20121227|3670_1 1286 QRVHLAHAVRSLDDEVAEDGANFSTGQRQLLCIARALLSRCSLVIMDEATSAVDAETDALIQRTIRS---AFADATVITIAHRL-NTVLDADKIMVLEKGELAEYGSPRDLMAKPRGIF 1400
                  6777777788899*********************************************999988765...67899******965.56668**********************9997665 PP

>> TIGR03864  PQQ_ABC_ATP: ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   3.5e-05    0.0025      14      63 ..     523     572 ..     515     585 .. 0.86
   2 !   30.7   0.0     6e-10   4.3e-08     132     224 ..     632     725 ..     618     734 .. 0.88
   3 !   46.9   0.4   6.7e-15   4.8e-13     108     222 ..    1283    1395 ..    1263    1405 .. 0.88

  Alignments for each domain:
  == domain 1    score: 15.1 bits;  conditional E-value: 3.5e-05
   TIGR03864  14 rralddvsltvakgefvaLLGpnGaGkstLfslltrLyeakegeikvaGl 63 
                 r +l++v+++ + ge+vaL+G  GaGks  +s l + +    g++++ G 
  MMETSP1137-20121227|3670_1 523 RFVLRSVDMRASAGELVALVGAVGAGKSSFLSALLGDMPCVGGSVALRGR 572
                 6799**************************99998877777777777775 PP

  == domain 2    score: 30.7 bits;  conditional E-value: 6e-10
   TIGR03864 132 eLnGGhrrrveiarallhePklLLlDeatvGLDiesraalveevr..elvreeglsvLWathlvdeveaedrlvvlhkGkvlaqGaaaelaaead 224
                  L+GG+r rv +ara+  + ++ LlD++ +  D +  aal+eev   +   +++l +L  t  ++ +  +d++ vl +G+v+ +G+ +ela++ +
  MMETSP1137-20121227|3670_1 632 FLSGGQRARVALARAVYADAEVYLLDDPLAACDSRVAAALMEEVIgpNGLLKDKLRILS-TSNLESLGGADQIHVLRNGEVQESGTYEELARTDG 725
                 59***************************************999522345588999995.666799***********************988654 PP

  == domain 3    score: 46.9 bits;  conditional E-value: 6.7e-15
   TIGR03864  108 eaeerieealarlglaeraeekvreLnGGhrrrveiarallhePklLLlDeatvGLDiesraalveevrelvreeglsvLWathlvdeveaedrlvvlhkGkvlaqGaaaelaae 222 
                  +a +r++ a a  +l +  +e   + + G+r+ + iarall + +l+++Deat  +D+e+ a +++++r+    ++ +v+   h ++ v ++d+++vl+kG+++  G++++l+a+
  MMETSP1137-20121227|3670_1 1283 AALQRVHLAHAVRSLDDEVAEDGANFSTGQRQLLCIARALLSRCSLVIMDEATSAVDAETDALIQRTIRSAF--ADATVITIAHRLNTVLDADKIMVLEKGELAEYGSPRDLMAK 1395
                  567788888888889999999999**********************************************99..566788899****************************9986 PP

>> TIGR00968  3a0106s01: sulfate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0   2.3e-05    0.0017      15      64 ..     525     574 ..     518     582 .. 0.90
   2 !   40.4   0.0   6.9e-13     5e-11     130     221 ..     632     723 ..     584     737 .. 0.85
   3 !   33.8   0.1   7.1e-11   5.1e-09     128     226 ..    1305    1400 ..    1261    1405 .. 0.86

  Alignments for each domain:
  == domain 1    score: 15.8 bits;  conditional E-value: 2.3e-05
   TIGR00968  15 alddvdlevktGslvallGpsGsGkstllrviaGlekpdsGrilleGrdv 64 
                 +l +vd+    G+lval+G  G+Gks++l ++ G      G + l+Gr +
  MMETSP1137-20121227|3670_1 525 VLRSVDMRASAGELVALVGAVGAGKSSFLSALLGDMPCVGGSVALRGRCA 574
                 7899******************************9888999999999866 PP

  == domain 2    score: 40.4 bits;  conditional E-value: 6.9e-13
   TIGR00968 130 qlsGGqrqrvalaralavepqvllldepfgaldakvrkelrawlrklhdevkvttvfvthdqeealevadrivvlekGkieqvgsaeevyde 221
                  lsGGqr rvalara+  + +v lld+p++a d++v   l + +      +k    +++  + e+l  ad+i vl++G++++ g+ ee+ + 
  MMETSP1137-20121227|3670_1 632 FLSGGQRARVALARAVYADAEVYLLDDPLAACDSRVAAALMEEVIGPNGLLKDKLRILSTSNLESLGGADQIHVLRNGEVQESGTYEELART 723
                 69**********************************99998887665555554444555678899********************9998764 PP

  == domain 3    score: 33.8 bits;  conditional E-value: 7.1e-11
   TIGR00968  128 psqlsGGqrqrvalaralavepqvllldepfgaldakvrkelrawlrklhdevkvttvfvthdqeealevadrivvlekGkieqvgsaeevydepataf 226 
                   +++s Gqrq + +aral     ++++de  +a+da+    +++ +r    +  v  + ++h  +  l+ ad+i+vlekG++ + gs+ +++ +p   f
  MMETSP1137-20121227|3670_1 1305 GANFSTGQRQLLCIARALLSRCSLVIMDEATSAVDAETDALIQRTIRSAFADATV--ITIAHRLNTVLD-ADKIMVLEKGELAEYGSPRDLMAKPRGIF 1400
                  5789*******************************************99987655..557899888887.9**********************998766 PP

>> TIGR02142  modC_ABC: molybdate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.8   0.0   0.00015     0.011      15      72 ..     528     585 ..     520     595 .. 0.88
   2 !   36.3   0.0   1.1e-11   8.2e-10     131     223 ..     632     724 ..     623     750 .. 0.78
   3 !   38.3   0.0   2.7e-12   1.9e-10     120     223 ..    1296    1396 ..    1259    1407 .. 0.81

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 0.00015
   TIGR02142  15 dvdlelpgkgvtalFGrsGsGktslirliaGLtrpdegeivldgevlqdsrkkiilpp 72 
                  vd++ ++ +++al G+ G+Gk+s++ ++ G +    g + l g++   ++   il +
  MMETSP1137-20121227|3670_1 528 SVDMRASAGELVALVGAVGAGKSSFLSALLGDMPCVGGSVALRGRCAYTAQTPFILGA 585
                 478999999*************************************998887776665 PP

  == domain 2    score: 36.3 bits;  conditional E-value: 1.1e-11
   TIGR02142 131 kLsGGekqRvaigRAlLssPeLLlmDePLaaLDekrk....keilPyLerlsaelkiPilyvsHsldevarladrvvvledGrvkaagkleevlask 223
                  LsGG + Rva++RA+ ++ e+ l+D+PLaa D++      +e++     l+++l+i    +s s  e +  ad++ vl++G v+  g+ ee++++ 
  MMETSP1137-20121227|3670_1 632 FLSGGQRARVALARAVYADAEVYLLDDPLAACDSRVAaalmEEVIGPNGLLKDKLRI----LSTSNLESLGGADQIHVLRNGEVQESGTYEELARTD 724
                 69*******************************987611115556555667777665....78888999999*********************9864 PP

  == domain 3    score: 38.3 bits;  conditional E-value: 2.7e-12
   TIGR02142  120 giehLleRlpgkLsGGekqRvaigRAlLssPeLLlmDePLaaLDekrkkeilPyLerlsaelkiPilyvsHsldevarladrvvvledGrvkaagkleevlask 223 
                  +++  +    ++ s G +q   i+RAlLs+  L++mDe  +a+D +  + i   +++  a+    ++ ++H l+ v+  ad+++vle+G ++  g++ +++a++
  MMETSP1137-20121227|3670_1 1296 SLDDEVAEDGANFSTGQRQLLCIARALLSRCSLVIMDEATSAVDAETDALIQRTIRSAFAD--ATVITIAHRLNTVLD-ADKIMVLEKGELAEYGSPRDLMAKP 1396
                  5666677778899*********************************999888777765554..56899******9987.9********************9986 PP

>> TIGR03410  urea_trans_UrtE: urea ABC transporter, ATP-binding protein UrtE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.2   0.1   1.8e-13   1.3e-11      14     221 ..     524     722 ..     519     727 .. 0.82
   2 !   38.3   0.0     3e-12   2.1e-10     120     218 ..    1296    1391 ..    1251    1397 .. 0.84

  Alignments for each domain:
  == domain 1    score: 42.2 bits;  conditional E-value: 1.8e-13
   TIGR03410  14 evlrdvslevekgevvavlGrngvGkttllkalvgllkvksGeielegeditklkpeervkaGiayvpqGreifpkltveenlelglealkkkekkipeeiyelFPvlkemlkR.......rgGdLsGGqqqqlaiaRaLvtePklllLDePteGiqPsiike.iekvikelakekdlaillveqvldfaleladrylvlerGevvaegekeelde 221
                  vlr+v++++++ge+va++G  g+Gk+++l al+g +++  G+++l+g+               ay  q   i+ + +v++n+       +++ +++  ++ +l P l+ + +R       rg  LsGGq+  +a+aRa+ ++ ++ lLD+P       + +  +e+vi      kd   +l+  +l+  l  ad++ vl +Gev ++g+ eel +
  MMETSP1137-20121227|3670_1 524 FVLRSVDMRASAGELVALVGAVGAGKSSFLSALLGDMPCVGGSVALRGR--------------CAYTAQTPFILGA-SVRDNILFDQPYDHERYERV-LRACQLMPDLSLLPERdftligdRGVFLSGGQRARVALARAVYADAEVYLLDDPLAACDSRVAAAlMEEVIGPNGLLKDKLRILSTSNLES-LGGADQIHVLRNGEVQESGTYEELAR 722
                 59********************************************997..............5888898888765.99999999888877654444.456788888877666644444447888********************************99987625778866555555555677788875.4569***************9999876 PP

  == domain 2    score: 38.3 bits;  conditional E-value: 3e-12
   TIGR03410  120 vlkemlkRrgGdLsGGqqqqlaiaRaLvtePklllLDePteGiqPsiikeiekvikelakekdlaillveqvldfaleladrylvlerGevvaegekee 218 
                   l++  +  g + s Gq+q l iaRaL+++  l+++De t  +     + i+++i++  +  d +++ + + l+ +l+ ad+++vle+Ge+ + g+ ++
  MMETSP1137-20121227|3670_1 1296 SLDDEVAEDGANFSTGQRQLLCIARALLSRCSLVIMDEATSAVDAETDALIQRTIRSAFA--DATVITIAHRLNTVLD-ADKIMVLEKGELAEYGSPRD 1391
                  46677778899********************************************98665..799************9.9***********99887665 PP

>> TIGR02315  ABC_phnC: phosphonate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.0   4.2e-06    0.0003      16      59 ..     524     567 ..     519     591 .. 0.84
   2 !   29.6   0.0   1.3e-09   9.3e-08     144     188 ..     631     675 ..     615     720 .. 0.91
   3 !   32.1   0.1   2.3e-10   1.6e-08     120     233 ..    1275    1392 ..    1256    1397 .. 0.76

  Alignments for each domain:
  == domain 1    score: 18.1 bits;  conditional E-value: 4.2e-06
   TIGR02315  16 qalknvnleikkGelvaviGlsGaGkstllrsinrlveissgsi 59 
                  +l+ v++  + Gelva++G  GaGks +l ++ + +    gs+
  MMETSP1137-20121227|3670_1 524 FVLRSVDMRASAGELVALVGAVGAGKSSFLSALLGDMPCVGGSV 567
                 5899**************************98766555555555 PP

  == domain 2    score: 29.6 bits;  conditional E-value: 1.3e-09
   TIGR02315 144 dqLsGGqqqRvaiaRalaqqpklilaDEPiasLDpksskqvmdll 188
                   LsGGq+ Rva+aRa+  ++++ l D+P+a+ D + +  +m+ +
  MMETSP1137-20121227|3670_1 631 VFLSGGQRARVALARAVYADAEVYLLDDPLAACDSRVAAALMEEV 675
                 569*************************************99875 PP

  == domain 3    score: 32.1 bits;  conditional E-value: 2.3e-10
   TIGR02315  120 eedkekAlelLervglaela.......akradqLsGGqqqRvaiaRalaqqpklilaDEPiasLDpksskqvmdllkrinkekgitvivnlHqvdlakkyadrivglkageivfdgassel 233 
                  e+  +   ++L+rv la+         a+   + s Gq+q + iaRal+ + +l++ DE ++++D ++   + +++++     + tvi   H+++ +   ad+i+ l++ge+  +g++++l
  MMETSP1137-20121227|3670_1 1275 EHTAQAMWAALQRVHLAHAVrslddevAEDGANFSTGQRQLLCIARALLSRCSLVIMDEATSAVDAETDALIQRTIRSAFA--DATVITIAHRLNTVLD-ADKIMVLEKGELAEYGSPRDL 1392
                  5555555566777766655411100004445679**************************************999998765..4577777899999987.9**********9988888876 PP

>> TIGR01187  potA: polyamine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.3       8.6   6.2e+02       1      29 [.     541     569 ..     541     572 .. 0.81
   2 !   40.3   0.0   5.8e-13   4.2e-11     100     189 ..     632     721 ..     595     800 .. 0.87
   3 !   44.4   0.2   3.4e-14   2.4e-12      79     196 ..    1286    1400 ..    1276    1404 .. 0.89

  Alignments for each domain:
  == domain 1    score: -3.0 bits;  conditional E-value: 8.6
   TIGR01187   1 lLGpsGsGkttlLrllaGleeldsGkill 29 
                 l+G+ G+Gk+  L  l G      G++ l
  MMETSP1137-20121227|3670_1 541 LVGAVGAGKSSFLSALLGDMPCVGGSVAL 569
                 689***********999977666677666 PP

  == domain 2    score: 40.3 bits;  conditional E-value: 5.8e-13
   TIGR01187 100 qlsGGqrqrvalaravvkkPkiLLlDeplsaLDkkLrdqmqlelkalqeklGitvvlvthDqeealtmsdriavlrkGkiaqigepeeiy 189
                  lsGGqr rvalarav    ++ LlD+pl+a D ++   + +e+   +  l   + +      e+l  +d+i vlr+G+++  g+ ee+ 
  MMETSP1137-20121227|3670_1 632 FLSGGQRARVALARAVYADAEVYLLDDPLAACDSRVAAALMEEVIGPNGLLKDKLRILSTSNLESLGGADQIHVLRNGEVQESGTYEELA 721
                 59*****************************************987666666665556667899********************999975 PP

  == domain 3    score: 44.4 bits;  conditional E-value: 3.4e-14
   TIGR01187   79 ervkeaLelvqleefakrkpsqlsGGqrqrvalaravvkkPkiLLlDeplsaLDkkLrdqmqlelkalqeklGitvvlvthDqeealtmsdriavlrkGkiaqigepeeiyeePanef 196 
                  +rv+ a  +  l++  +    ++s Gqrq + +ara+  +  ++++De+ sa+D +    +q  +++       tv+ ++h  +  l  +d+i vl+kG++a  g+p+++ ++P   f
  MMETSP1137-20121227|3670_1 1286 QRVHLAHAVRSLDDEVAEDGANFSTGQRQLLCIARALLSRCSLVIMDEATSAVDAETDALIQRTIRSAFAD--ATVITIAHRLNTVL-DADKIMVLEKGELAEYGSPRDLMAKPRGIF 1400
                  5677777777888888889999****************************************999987765..69999999876655.69************************8776 PP

>> TIGR01188  drrA: daunorubicin resistance ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.0   0.0    0.0046      0.33       9      52 ..     526     569 ..     522     574 .. 0.85
   2 !   29.4   0.0   1.4e-09     1e-07      97     219 ..     600     727 ..     585     762 .. 0.76
   3 !   38.9   0.0   1.9e-12   1.3e-10     114     213 ..    1297    1394 ..    1264    1406 .. 0.86

  Alignments for each domain:
  == domain 1    score: 8.0 bits;  conditional E-value: 0.0046
   TIGR01188   9 vdgvnlkveegevfglLGPnGAGKtttikmLttllkPdsGtarv 52 
                 +++v+++ ++ge+++l+G  GAGK+  ++ L + ++  +G++ +
  MMETSP1137-20121227|3670_1 526 LRSVDMRASAGELVALVGAVGAGKSSFLSALLGDMPCVGGSVAL 569
                 789**********************9999888777777776665 PP

  == domain 2    score: 29.4 bits;  conditional E-value: 1.4e-09
   TIGR01188  97 pkkeaeeraeellelvelkeaadkkv.....ktysgGmrrrlelaasliaqPevlfLDEPtiGLDprtrraiwdlieelkke..gvtilltthyleeadkladrvaiidkGkiiaedtpeeLKervgkev 219
                 ++ e+  ra +l+  ++l   +d ++       +sgG+r r+ la+++ a+ ev+ LD+P    D+r ++a+ + +   +    ++  +l+t +le     ad++ ++++G++   +t eeL +  ++ +
  MMETSP1137-20121227|3670_1 600 ERYERVLRACQLMPDLSLLPERDFTLigdrgVFLSGGQRARVALARAVYADAEVYLLDDPLAACDSRVAAALMEEVIGPNGLlkDKLRILSTSNLESLG-GADQIHVLRNGEVQESGTYEELAR-TDGAF 727
                 5555555666666666666665543311111247***************************************99987776555788889999998876.59********************84.44444 PP

  == domain 3    score: 38.9 bits;  conditional E-value: 1.9e-12
   TIGR01188  114 lkeaadkkvktysgGmrrrlelaasliaqPevlfLDEPtiGLDprtrraiwdlieelkkegvtilltthyleeadkladrvaiidkGkiiaedtpeeLKe 213 
                  l +   +   ++s G+r+ l +a++l+++ +++ +DE t+ +D++t + i + i++   ++ t++  +h l+ +   ad++ +++kG+++  ++p++L +
  MMETSP1137-20121227|3670_1 1297 LDDEVAEDGANFSTGQRQLLCIARALLSRCSLVIMDEATSAVDAETDALIQRTIRSAF-ADATVITIAHRLNTV-LDADKIMVLEKGELAEYGSPRDLMA 1394
                  55555666678*******************************************9865.6899********998.459******************9965 PP

>> TIGR01186  proV: glycine betaine/L-proline transport ATP binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.0     0.069         5       9      37 ..     526     554 ..     519     572 .. 0.87
   2 !   33.1   0.0   9.8e-11   7.1e-09     130     219 ..     633     722 ..     603     749 .. 0.90
   3 !   37.1   0.0   5.8e-12   4.1e-10     128     223 ..    1306    1398 ..    1275    1408 .. 0.88

  Alignments for each domain:
  == domain 1    score: 4.0 bits;  conditional E-value: 0.069
   TIGR01186   9 vndvdleieeGeiiviiGlsGsGkstlvr 37 
                 +++vd+    Ge++ ++G  G+Gks+ + 
  MMETSP1137-20121227|3670_1 526 LRSVDMRASAGELVALVGAVGAGKSSFLS 554
                 57899********************9765 PP

  == domain 2    score: 33.1 bits;  conditional E-value: 9.8e-11
   TIGR01186 130 lsGGmqqrvGlaralaaePdlllmdeafsaldPlirdelqdelvklqkklqktivfithdldealrlgdrivilkaGeivqvGtPdeilr 219
                 lsGG++ rv lara+ a+ ++ l+d++++a d  +   l +e++  +  l+  +  ++    e+l  +d+i +l++Ge+   Gt +e+ r
  MMETSP1137-20121227|3670_1 633 LSGGQRARVALARAVYADAEVYLLDDPLAACDSRVAAALMEEVIGPNGLLKDKLRILSTSNLESLGGADQIHVLRNGEVQESGTYEELAR 722
                 9*******************************************9999888777777777779**********************99866 PP

  == domain 3    score: 37.1 bits;  conditional E-value: 5.8e-12
   TIGR01186  128 delsGGmqqrvGlaralaaePdlllmdeafsaldPlirdelqdelvklqkklqktivfithdldealrlgdrivilkaGeivqvGtPdeilrnPan 223 
                   ++s G++q + +aral     l++mdea sa+d  +   +q  +       + t++ i+h l+  l  +d+i++l++Ge+   G+P +++  P  
  MMETSP1137-20121227|3670_1 1306 ANFSTGQRQLLCIARALLSRCSLVIMDEATSAVDAETDALIQRTIRSA--FADATVITIAHRLNTVLD-ADKIMVLEKGELAEYGSPRDLMAKPRG 1398
                  5789*********************************99999998865..5678*********98886.9*********************99975 PP

>> TIGR01277  thiQ: thiamine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0   1.6e-05    0.0011      17      61 ..     529     573 ..     521     593 .. 0.85
   2 !   32.1   0.0   2.6e-10   1.8e-08     129     209 ..     633     713 ..     628     716 .. 0.81
   3 !   25.9   0.1   1.9e-08   1.4e-06      86     209 ..    1265    1385 ..    1258    1388 .. 0.78

  Alignments for each domain:
  == domain 1    score: 16.4 bits;  conditional E-value: 1.6e-05
   TIGR01277  17 fdlsveaGervailGesGaGkstllnliaGflepasGeikvndkd 61 
                  d+  +aGe va++G  GaGks++l+ + G +  + G++ + ++ 
  MMETSP1137-20121227|3670_1 529 VDMRASAGELVALVGAVGAGKSSFLSALLGDMPCVGGSVALRGRC 573
                 5778899*************************99****9998864 PP

  == domain 2    score: 32.1 bits;  conditional E-value: 2.6e-10
   TIGR01277 129 lsGGqrqrvalarclvrekpillldepfsaldpklreemlalv.kkladekkltlllvthslsdaaaiasqvvvvedGkikv 209
                 lsGGqr rvalar +  +  ++lld+p++a d ++   ++  v       k++  +l t +  +  + a+q+ v+ +G+++ 
  MMETSP1137-20121227|3670_1 633 LSGGQRARVALARAVYADAEVYLLDDPLAACDSRVAAALMEEViGPNGLLKDKLRILSTSN-LESLGGADQIHVLRNGEVQE 713
                 9********************************9998877655055555555555555555.5667889*********9975 PP

  == domain 3    score: 25.9 bits;  conditional E-value: 1.9e-08
   TIGR01277   86 tvrqnig.lGlkpglklnavqkekvedvarqvGiadylerlpeelsGGqrqrvalarclvrekpillldepfsaldpklreemlalvkklade..kkltlllvthslsdaaaiasqvvvvedGkikv 209 
                  tvr+n+  lG + +  + a   ++v+ +     ++d ++    ++s Gqrq + +ar l+    ++++de  sa+d     e  al++++      + t++ ++h+l+ +   a++++v+e+G+++ 
  MMETSP1137-20121227|3670_1 1265 TVRDNLDpLGEHTAQAMWAAL-QRVHLAHAVRSLDDEVAEDGANFSTGQRQLLCIARALLSRCSLVIMDEATSAVDA----ETDALIQRTIRSafADATVITIAHRLNTVL-DADKIMVLEKGELAE 1385
                  788888448888777665443.3344444444689999999***********************************7....55567766654422699********98766.689********9875 PP

>> TIGR03771  anch_rpt_ABC: anchored repeat-type ABC transporter, ATP-binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.0   2.8e-06    0.0002       2      47 ..     532     577 ..     531     611 .. 0.84
   2 !   23.9   0.0   8.3e-08     6e-06     109     199 ..     629     720 ..     614     728 .. 0.73
   3 !   31.5   0.3   4.2e-10     3e-08      92     200 ..    1279    1393 ..    1267    1400 .. 0.80

  Alignments for each domain:
  == domain 1    score: 19.0 bits;  conditional E-value: 2.8e-06
   TIGR03771   2 svdkGellgllGpnGaGkttllrailglikvakGsvkvagkssrkg 47 
                 ++++Gel++l+G  GaGk+++l a+lg ++   Gsv + g+ + ++
  MMETSP1137-20121227|3670_1 532 RASAGELVALVGAVGAGKSSFLSALLGDMPCVGGSVALRGRCAYTA 577
                 789***********************************99976554 PP

  == domain 2    score: 23.9 bits;  conditional E-value: 8.3e-08
   TIGR03771 109 rpvGelsGGqrqrvlvaralavkpslllldepftGldlpsqellvelfee...lagegtailmtthdlaeavatcdrvvllngrvvadgapdql 199
                 r v  lsGGqr rv +ara+  + ++ lld+p++  d      l+e ++    l +++   +++t +l     + +  vl ng+v   g+ ++l
  MMETSP1137-20121227|3670_1 629 RGV-FLSGGQRARVALARAVYADAEVYLLDDPLAACDSRVAAALMEEVIGpngLLKDKL-RILSTSNLESLGGADQIHVLRNGEVQESGTYEEL 720
                 554.49*******************************9998888775543111444444.4567788865444444457778888887777766 PP

  == domain 3    score: 31.5 bits;  conditional E-value: 4.2e-10
   TIGR03771   92 aavadalervkltela...drpv....GelsGGqrqrvlvaralavkpslllldepftGldlpsqellvelfeelagegtailmtthdlaeavatcdrvvllngrvvadgapdqlq 200 
                  +a+ +al+rv+l++     d  v     ++s Gqrq + +aral  + sl+++de  + +d  +  l+    +  a ++ +++  +h l   +++ + +vl  g++   g+p +l 
  MMETSP1137-20121227|3670_1 1279 QAMWAALQRVHLAHAVrslDDEVaedgANFSTGQRQLLCIARALLSRCSLVIMDEATSAVDAETDALIQRT-IRSAFADATVITIAHRLNTVLDADKIMVLEKGELAEYGSPRDLM 1393
                  466788999988885411123341221468*******************************9987666555.556788899999*********9999999999999999***9986 PP

>> TIGR02982  heterocyst_DevA: ABC exporter ATP-binding subunit, DevA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.0   0.00012    0.0089      14      53 ..     519     558 ..     515     582 .. 0.81
   2 !   23.0   0.1   1.5e-07   1.1e-05     142     181 ..     633     672 ..     624     677 .. 0.90
   3 !   39.6   0.8   1.2e-12   8.8e-11     130     219 ..    1296    1383 ..    1266    1384 .. 0.80

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 0.00012
   TIGR02982  14 gelrkqvlfdinleiepgeiviltGpsGsGkttlltligg 53 
                 g+ ++ vl +++++ ++ge+v l G+ G+Gk  +l+ + g
  MMETSP1137-20121227|3670_1 519 GARERFVLRSVDMRASAGELVALVGAVGAGKSSFLSALLG 558
                 566788***************************9975444 PP

  == domain 2    score: 23.0 bits;  conditional E-value: 1.5e-07
   TIGR02982 142 lsgGqkqrvaiaralvarPklvladePtaaldkksgrevv 181
                 lsgGq+ rva+ara+ a  ++ l d+P aa d++ + +++
  MMETSP1137-20121227|3670_1 633 LSGGQRARVALARAVYADAEVYLLDDPLAACDSRVAAALM 672
                 9*******************************99877655 PP

  == domain 3    score: 39.6 bits;  conditional E-value: 1.2e-12
   TIGR02982  130 gleerldykpedlsgGqkqrvaiaralvarPklvladePtaaldkksgrevvellqklareqgttillvthd.nrildvadrivkmedGkl 219 
                   l++++    +++s Gq+q + iaral +r +lv+ de t+a+d+++   +   ++       +t++ ++h  n +ld ad+i+ +e+G+l
  MMETSP1137-20121227|3670_1 1296 SLDDEVAEDGANFSTGQRQLLCIARALLSRCSLVIMDEATSAVDAETDALIQRTIRSAFA--DATVITIAHRlNTVLD-ADKIMVLEKGEL 1383
                  5788999999************************************99877777765443..4566667776145555.9*********98 PP

>> TIGR03005  ectoine_ehuA: ectoine/hydroxyectoine ABC transporter, ATP-binding protein EhuA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.9   0.0   0.00028      0.02      15      67 ..     525     577 ..     519     588 .. 0.90
   2 !   19.9   0.0     1e-06   7.4e-05     145     236 ..     631     722 ..     622     728 .. 0.82
   3 !   39.7   0.1   9.4e-13   6.8e-11     135     239 ..    1296    1397 ..    1239    1404 .. 0.85

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 0.00028
   TIGR03005  15 vldglelevaaGekvaliGpsGsGkstilrilmtletideGsikvegeqlyhm 67 
                 vl  +++  +aGe val+G  G+Gks+ l  l+   +  +Gs+ + g   y  
  MMETSP1137-20121227|3670_1 525 VLRSVDMRASAGELVALVGAVGAGKSSFLSALLGDMPCVGGSVALRGRCAYTA 577
                 89999****************************99999999999998887765 PP

  == domain 2    score: 19.9 bits;  conditional E-value: 1e-06
   TIGR03005 145 aqlsGGqkqrvaiaralalrpkvllfdevtsaldpelveevl.nvlrrlasetdltmllvthemgfarefadrvlffdkGkiveeGkpdeifr 236
                 + lsGGq+ rva+ara+     v l+d++ +a d ++   ++ +v+   +  +d   +l t ++      ad++  + +G + e G  +e+ r
  MMETSP1137-20121227|3670_1 631 VFLSGGQRARVALARAVYADAEVYLLDDPLAACDSRVAAALMeEVIGPNGLLKDKLRILSTSNLES-LGGADQIHVLRNGEVQESGTYEELAR 722
                 569*******************************99887766247777777777777788888774.45688888888888888888888765 PP

  == domain 3    score: 39.7 bits;  conditional E-value: 9.4e-13
   TIGR03005  135 GladkadalpaqlsGGqkqrvaiaralalrpkvllfdevtsaldpelveevlnvlrrlasetdltmllvthemgfarefadrvlffdkGkiveeGkpdeifrkpk 239 
                   l d   +  a++s Gq+q + iaral  r  ++++de+tsa+d e    +   +r   +  d t++ ++h+++   + ad+++ ++kG ++e G p +++ kp+
  MMETSP1137-20121227|3670_1 1296 SLDDEVAEDGANFSTGQRQLLCIARALLSRCSLVIMDEATSAVDAETDALIQRTIRS--AFADATVITIAHRLNTVLD-ADKIMVLEKGELAEYGSPRDLMAKPR 1397
                  577788888899**********************************98888888886..4568999********9998.9**********************997 PP

>> TIGR01189  ccmA: heme ABC exporter, ATP-binding protein CcmA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.7   0.2   1.7e-14   1.2e-12      12     169 ..     522     674 ..     513     691 .. 0.74
   2 !   27.4   0.4   6.9e-09     5e-07      92     183 ..    1268    1363 ..    1261    1377 .. 0.74

  Alignments for each domain:
  == domain 1    score: 45.7 bits;  conditional E-value: 1.7e-14
   TIGR01189  12 ervlleglsfelaaGealvveGpnGiGKttLLRilaGLlkpesGevelndkelaeqrdelaeellylgHldglKaeLsalEnLkf........yaallqseqktve.ealekvgLsgledlpvaqLsAGqkrRlalarLllskaplWiLDEPttalDkegvellael 169
                 er +l++++++ +aGe+++++G  G+GK++ L  l G ++   G+v+l ++             +y + ++ + ++ s+++n+ f        y+++l++ q++ +   l + + + + d+ v +Ls Gq+ R+alar + + a +++LD+P++a D +  + l+e 
  MMETSP1137-20121227|3670_1 522 ERFVLRSVDMRASAGELVALVGAVGAGKSSFLSALLGDMPCVGGSVALRGRC------------AYTAQTPFILGA-SVRDNILFdqpydherYERVLRACQLMPDlSLLPERDFTLIGDRGV-FLSGGQRARVALARAVYADAEVYLLDDPLAACDSRVAAALMEE 674
                 6889********************************************9554............333333333322.4444444410000011555555444433213445555555555544.8********************************9988877765 PP

  == domain 2    score: 27.4 bits;  conditional E-value: 6.9e-09
   TIGR01189   92 EnLkfyaallqseqktveealekvgLsgl....edlpv...aqLsAGqkrRlalarLllskaplWiLDEPttalDkegvellaellaaHlargGivlla 183 
                  +nL+ + + +    +++++al++v L+++    +d ++   a+ s Gq++ l +ar lls+  l i+DE t a+D+e+ +l+++++++  a   ++ +a
  MMETSP1137-20121227|3670_1 1268 DNLDPLGEHT---AQAMWAALQRVHLAHAvrslDDEVAedgANFSTGQRQLLCIARALLSRCSLVIMDEATSAVDAETDALIQRTIRSAFADATVITIA 1363
                  5555444433...3478999999998775222134343222689******************************************9988776555444 PP

>> TIGR02211  LolD_lipo_ex: lipoprotein releasing system, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.0   1.5e-06   0.00011      17      67 ..     522     572 ..     515     579 .. 0.85
   2 !   19.1   0.0   2.2e-06   0.00016     141     192 ..     632     683 ..     621     713 .. 0.74
   3 !   30.6   0.2     7e-10     5e-08     130     220 ..    1296    1384 ..    1274    1385 .. 0.83

  Alignments for each domain:
  == domain 1    score: 19.7 bits;  conditional E-value: 1.5e-06
   TIGR02211  17 eievlkgvsleiekgelvaivGssGsGkstllhllggldkptsGevllkGk 67 
                 e  vl+ v+++ ++gelva+vG+ G+Gks +l  l g      G+v l+G+
  MMETSP1137-20121227|3670_1 522 ERFVLRSVDMRASAGELVALVGAVGAGKSSFLSALLGDMPCVGGSVALRGR 572
                 5679****************************9998855556789999997 PP

  == domain 2    score: 19.1 bits;  conditional E-value: 2.2e-06
   TIGR02211 141 elsGGerqrvaiaralvnkPklvladePtgnldkktakkifelllelnkekn 192
                  lsGG+r rva+ara+  + ++ l d+P +  d++ a +++e +   n  ++
  MMETSP1137-20121227|3670_1 632 FLSGGQRARVALARAVYADAEVYLLDDPLAACDSRVAAALMEEVIGPNGLLK 683
                 69*********************************99998876665555544 PP

  == domain 3    score: 30.6 bits;  conditional E-value: 7e-10
   TIGR02211  130 glekrinkkpselsGGerqrvaiaralvnkPklvladePtgnldkktakkifelllelnkekntallvvthdlelakkldrvlelkdgkla 220 
                   l++ + +  +++s G+rq   iaral+++ +lv+ de t+ +d++t   i + ++      + +++ ++h l+ +  +d+ + l++g+la
  MMETSP1137-20121227|3670_1 1296 SLDDEVAEDGANFSTGQRQLLCIARALLSRCSLVIMDEATSAVDAETDALIQRTIRSAFA--DATVITIAHRLNTVLDADKIMVLEKGELA 1384
                  4677778888999**********************************9999998887554..56678999*****************9996 PP

>> TIGR02314  ABC_MetN: D-methionine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.0     0.042         3      17      50 ..     522     555 ..     516     580 .. 0.80
   2 !   19.0   0.0   1.7e-06   0.00012     141     227 ..     633     719 ..     628     727 .. 0.84
   3 !   42.9   0.0   9.4e-14   6.8e-12      96     234 ..    1263    1398 ..    1255    1407 .. 0.84

  Alignments for each domain:
  == domain 1    score: 4.6 bits;  conditional E-value: 0.042
   TIGR02314  17 kikaldnvslfvpkgqifgvigasgagkstlirc 50 
                 +   l  v++   +g+++ ++ga gagks+++  
  MMETSP1137-20121227|3670_1 522 ERFVLRSVDMRASAGELVALVGAVGAGKSSFLSA 555
                 55678999999******************98764 PP

  == domain 2    score: 19.0 bits;  conditional E-value: 1.7e-06
   TIGR02314 141 lsggqkqrvaiaralasepkvllcdeatsaldpattqsilellkeinrrlglti.llithemdvvkricdevavidkgeliekgtvse 227
                 lsggq+ rva+ara+ ++  v l d+  +a d   + +++e +   n  l+  + +l t +++ +    d++ v+ +ge+ e gt  e
  MMETSP1137-20121227|3670_1 633 LSGGQRARVALARAVYADAEVYLLDDPLAACDSRVAAALMEEVIGPNGLLKDKLrILSTSNLESLGG-ADQIHVLRNGEVQESGTYEE 719
                 9*********************************999999988888887764442456778887754.78899999999999888776 PP

  == domain 3    score: 42.9 bits;  conditional E-value: 9.4e-14
   TIGR02314   96 srtvfgnvalplelentpkekikrkvtellalvglsdkkdsypsnlsggqkqrvaiaralasepkvllcdeatsaldpattqsilellkeinrrlgltillithemdvvkricdevavidkgeliekgtvseifshpkt 234 
                  s tv +n+    e  +++     ++v    a+  l d      +n+s gq+q + iaral s   +++ deatsa+d  t   i   ++      + t++ i+h ++ v    d++ v++kgel e g+  +++++p+ 
  MMETSP1137-20121227|3670_1 1263 SGTVRDNLDPLGEHTAQAMWAALQRVHLAHAVRSLDDEVAEDGANFSTGQRQLLCIARALLSRCSLVIMDEATSAVDAETDALIQRTIRSAF--ADATVITIAHRLNTVLD-ADKIMVLEKGELAEYGSPRDLMAKPRG 1398
                  5666666654445566666666788888888899999999999**********************************999888877776644..57899********9987.79**********************985 PP

>> TIGR02769  nickel_nikE: nickel import ATP-binding protein NikE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.0   4.2e-06    0.0003      23      73 ..     522     572 ..     505     579 .. 0.85
   2 !   12.0   0.0   0.00033     0.023     151     191 ..     633     673 ..     597     695 .. 0.88
   3 !   38.8   0.1   2.1e-12   1.5e-10     132     233 ..    1289    1387 ..    1266    1406 .. 0.80

  Alignments for each domain:
  == domain 1    score: 18.2 bits;  conditional E-value: 4.2e-06
   TIGR02769  23 rkavldnvslsleeGetvallGrsGaGkstlarlllGlekPakGevsfrGq 73 
                  + vl  v++   +Ge val+G  GaGks +   llG      G+v  rG+
  MMETSP1137-20121227|3670_1 522 ERFVLRSVDMRASAGELVALVGAVGAGKSSFLSALLGDMPCVGGSVALRGR 572
                 4679*********************************98888999999997 PP

  == domain 2    score: 12.0 bits;  conditional E-value: 0.00033
   TIGR02769 151 lsGGqlqriniaralavePklivldeavsnldlvlqasile 191
                 lsGGq  r+++ara+ ++ ++ +ld+ ++  d    a+++e
  MMETSP1137-20121227|3670_1 633 LSGGQRARVALARAVYADAEVYLLDDPLAACDSRVAAALME 673
                 8****************************999887776665 PP

  == domain 3    score: 38.8 bits;  conditional E-value: 2.1e-12
   TIGR02769  132 ellelvelrsevldklPrqlsGGqlqriniaralavePklivldeavsnldlvlqasilellkklkqefG.laylfithdlrlvqkfaqrvlvldeGqiveei 233 
                  +l ++v   ++++    +++s Gq q ++iaral  +  l+++dea s +d    a i + ++    +f   +++ i+h l+ v   a++++vl++G++ e  
  MMETSP1137-20121227|3670_1 1289 HLAHAVRSLDDEVAEDGANFSTGQRQLLCIARALLSRCSLVIMDEATSAVDAETDALIQRTIRS---AFAdATVITIAHRLNTVLD-ADKIMVLEKGELAEYG 1387
                  566666656667777899**********************************999988776654...4440456789*****9987.8**********99865 PP

>> TIGR03608  L_ocin_972_ABC: putative bacteriocin export ABC transporter, lactococcin 972 group
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0     1e-05   0.00075       9      44 ..     521     556 ..     515     579 .. 0.81
   2 !   21.2   0.0   4.9e-07   3.6e-05     135     176 ..     633     674 ..     626     703 .. 0.89
   3 !   27.5   0.1   5.6e-09   4.1e-07     124     204 ..    1297    1376 ..    1260    1378 .. 0.74

  Alignments for each domain:
  == domain 1    score: 16.8 bits;  conditional E-value: 1e-05
   TIGR03608   9 kdkeilkklslkiekGelvaivGesGsGKstlLnil 44 
                 +++ +l++++++ ++Gelva+vG  G+GKs +L  l
  MMETSP1137-20121227|3670_1 521 RERFVLRSVDMRASAGELVALVGAVGAGKSSFLSAL 556
                 57899**************************99755 PP

  == domain 2    score: 21.2 bits;  conditional E-value: 4.9e-07
   TIGR03608 135 lsgGekqRvalarillkeselilADEPtgsLDkknreevlel 176
                 lsgG++ Rvalar++  ++e+ l D+P ++ D++  ++++e 
  MMETSP1137-20121227|3670_1 633 LSGGQRARVALARAVYADAEVYLLDDPLAACDSRVAAALMEE 674
                 9********************************999999875 PP

  == domain 3    score: 27.5 bits;  conditional E-value: 5.6e-09
   TIGR03608  124 lekklkkkiyelsgGekqRvalarillkeselilADEPtgsLDkknreevlellkelkeegktiiivtHdpevaekadrvi 204 
                  l+ +  +   ++s G++q + +ar+ll  ++l++ DE t+++D+++ + + + +++   ++ t+i + H  +    ad+++
  MMETSP1137-20121227|3670_1 1297 LDDEVAEDGANFSTGQRQLLCIARALLSRCSLVIMDEATSAVDAETDALIQRTIRSAF-ADATVITIAHRLNTVLDADKIM 1376
                  455566666789********************************99888888777665.6678888999998888888886 PP

>> TIGR01166  cbiO: cobalt ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.3   0.0   1.1e-07   7.7e-06       7      54 ..     525     572 ..     520     596 .. 0.93
   2 !   19.5   0.0   1.6e-06   0.00011     127     168 ..     632     673 ..     622     682 .. 0.90
   3 !   21.3   0.1   4.5e-07   3.3e-05     108     183 ..    1288    1363 ..    1269    1368 .. 0.82

  Alignments for each domain:
  == domain 1    score: 23.3 bits;  conditional E-value: 1.1e-07
   TIGR01166   7 vlkglnlavergevlallGanGaGkstlllhlnGllrPksGkvlldGe 54 
                 vl++++++++ ge +al+Ga GaGks +l+ l G +    G v l G+
  MMETSP1137-20121227|3670_1 525 VLRSVDMRASAGELVALVGAVGAGKSSFLSALLGDMPCVGGSVALRGR 572
                 9*******************************************9997 PP

  == domain 2    score: 19.5 bits;  conditional E-value: 1.6e-06
   TIGR01166 127 llsgGekkrvaiagavalrpdvllldePtagldpaGaeqlle 168
                  lsgG++ rva+a av   ++v lld+P a  d++ a  l+e
  MMETSP1137-20121227|3670_1 632 FLSGGQRARVALARAVYADAEVYLLDDPLAACDSRVAAALME 673
                 69*******************************987776654 PP

  == domain 3    score: 21.3 bits;  conditional E-value: 4.5e-07
   TIGR01166  108 vrealaavdisgleerpthllsgGekkrvaiagavalrpdvllldePtagldpaGaeqlleilrklreeGktvvis 183 
                  v+ a a+ ++++        +s G+++ + ia a+  r  ++++de t+ +d++    + +++r   ++ + + i+
  MMETSP1137-20121227|3670_1 1288 VHLAHAVRSLDDEVAEDGANFSTGQRQLLCIARALLSRCSLVIMDEATSAVDAETDALIQRTIRSAFADATVITIA 1363
                  444444455555555566789******************************************9988887666554 PP

>> TIGR02673  FtsE: cell division ATP-binding protein FtsE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.0   3.3e-06   0.00023      16      65 ..     524     573 ..     518     584 .. 0.90
   2 !   18.7   0.0   3.2e-06   0.00023     137     178 ..     632     673 ..     620     677 .. 0.94
   3 !   27.2   0.2   8.2e-09   5.9e-07     115     212 ..    1285    1380 ..    1254    1382 .. 0.79

  Alignments for each domain:
  == domain 1    score: 18.7 bits;  conditional E-value: 3.3e-06
   TIGR02673  16 eaLkdvslkiekgeflfltGasGaGkttllklllgaekpsrGevevaged 65 
                  +L++v+++ ++ge++ l+Ga GaGk+++l  llg      G+v + g+ 
  MMETSP1137-20121227|3670_1 524 FVLRSVDMRASAGELVALVGAVGAGKSSFLSALLGDMPCVGGSVALRGRC 573
                 5799****************************************999975 PP

  == domain 2    score: 18.7 bits;  conditional E-value: 3.2e-06
   TIGR02673 137 elsgGeqqRvaiaRaivnkPelllaDePtGnlDdelserild 178
                  lsgG + Rva+aRa+  + e+ l D+P    D+++++ +++
  MMETSP1137-20121227|3670_1 632 FLSGGQRARVALARAVYADAEVYLLDDPLAACDSRVAAALME 673
                 69*********************************9999885 PP

  == domain 3    score: 27.2 bits;  conditional E-value: 8.2e-09
   TIGR02673  115 qkrveevlelvgledkakalpeelsgGeqqRvaiaRaivnkPelllaDePtGnlDdelserildllkelnkrGttvivathdeelvervkkrvlelek 212 
                   +rv+ +  +  l+d + +   ++s G +q   iaRa++++ +l++ De t  +D+e+ + i + ++++ +  +tvi  +h  + v   + +++ lek
  MMETSP1137-20121227|3670_1 1285 LQRVHLAHAVRSLDDEVAEDGANFSTGQRQLLCIARALLSRCSLVIMDEATSAVDAETDALIQRTIRSAFAD-ATVITIAHRLNTVLD-ADKIMVLEK 1380
                  4677777777789999999999************************************99999999887665.677777777665543.345555655 PP

>> TIGR03873  F420-0_ABC_ATP: proposed F420-0 ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.1   1.3e-06   9.7e-05      13      63 ..     522     572 ..     514     580 .. 0.91
   2 !   16.8   0.0   9.3e-06   0.00067     137     181 ..     632     676 ..     594     724 .. 0.70
   3 !   31.0   0.7   4.3e-10   3.1e-08     133     226 ..    1303    1394 ..    1273    1402 .. 0.86

  Alignments for each domain:
  == domain 1    score: 19.6 bits;  conditional E-value: 1.3e-06
   TIGR03873  13 grlivddvdvtaPaGaltgllGPnGsGkstllrllaGllapdaGevdlaga 63 
                 +r ++  vd+ a aG+l +l+G  G+Gks +l+ l G +    G+v l g 
  MMETSP1137-20121227|3670_1 522 ERFVLRSVDMRASAGELVALVGAVGAGKSSFLSALLGDMPCVGGSVALRGR 572
                 6899****************************************9999875 PP

  == domain 2    score: 16.8 bits;  conditional E-value: 9.3e-06
   TIGR03873 137 tlsGGerqrvhlaralaqePklllldePtnhldvsaqlellalvr 181
                  lsGG+r rv lara+  + ++ lld+P    d +   +l++ v 
  MMETSP1137-20121227|3670_1 632 FLSGGQRARVALARAVYADAEVYLLDDPLAACDSRVAAALMEEVI 676
                 59***************************9999887766666554 PP

  == domain 3    score: 31.0 bits;  conditional E-value: 4.3e-10
   TIGR03873  133 rdlstlsGGerqrvhlaralaqePklllldePtnhldvsaqlellalvrelaaegvtvvvalhdlnlaasvcdhvvvldgGrvvaaGppaevlt 226 
                   d   +s G+rq   +aral  + +l+++de t  +d ++   + + +r+     +tv+   h ln     +d+++vl++G ++  G+p+++++
  MMETSP1137-20121227|3670_1 1303 EDGANFSTGQRQLLCIARALLSRCSLVIMDEATSAVDAETDALIQRTIRSA-FADATVITIAHRLNTVL-DADKIMVLEKGELAEYGSPRDLMA 1394
                  4556789**********************************9999999998.5678999999****865.68*****************99876 PP

>> TIGR02770  nickel_nikD: nickel import ATP-binding protein NikD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.4   0.1   0.00022     0.016       3      52 ..     527     572 ..     525     590 .. 0.85
   2 !   13.4   0.0   0.00011    0.0081     126     213 ..     633     720 ..     623     732 .. 0.87
   3 !   37.1   0.1   6.4e-12   4.6e-10      98     227 ..    1276    1405 ..    1262    1408 .. 0.82

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 0.00022
   TIGR02770   3 qdvnlslkrgkvlalvGesGsGksltalailglldkeltktsGeilldgk 52 
                 + v++ +  g+++alvG+ G+Gks   +a+lg ++     + G+++l+g+
  MMETSP1137-20121227|3670_1 527 RSVDMRASAGELVALVGAVGAGKSSFLSALLGDMP----CVGGSVALRGR 572
                 5799999*******************999999877....67777777776 PP

  == domain 2    score: 13.4 bits;  conditional E-value: 0.00011
   TIGR02770 126 lsGGmlqRvmialallleaplliaDePttdlDvvvqaevLklleelre.krglgillithDlgvvaeladevavmekGkivergtvkel 213
                 lsGG   Rv +a a+ ++a + + D+P ++ D  v+a +++++   +   ++   +l t +l  +   ad++ v+++G++ e+gt +el
  MMETSP1137-20121227|3670_1 633 LSGGQRARVALARAVYADAEVYLLDDPLAACDSRVAAALMEEVIGPNGlLKDKLRILSTSNLESLGG-ADQIHVLRNGEVQESGTYEEL 720
                 9***************************************998765541344555788999999975.9**************999887 PP

  == domain 3    score: 37.1 bits;  conditional E-value: 6.4e-12
   TIGR02770   98 qakelivealeavgLeeaeevlkky....pfelsGGmlqRvmialallleaplliaDePttdlDvvvqaevLklleelrekrglgillithDlgvvaeladevavmekGkivergtvkelfqePkhettrkLls 227 
                  ++ + + +al++v L++a + l+        ++s G  q + ia all++ +l+i De t+++D+ + a + +++++     + +++ i+h l+ v   ad+++v+ekG++ e g++ +l+ +P+    r++++
  MMETSP1137-20121227|3670_1 1276 HTAQAMWAALQRVHLAHAVRSLDDEvaedGANFSTGQRQLLCIARALLSRCSLVIMDEATSAVDAETDALIQRTIRSAF--ADATVITIAHRLNTVLD-ADKIMVLEKGELAEYGSPRDLMAKPRGI-FREMVH 1405
                  455578899999999999888875411114679************************************9999888765..567899*******9986.9************************854.455555 PP

>> TIGR02324  CP_lyasePhnL: phosphonate C-P lyase system protein PhnL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.7   0.0   4.1e-08   2.9e-06      19      71 ..     521     573 ..     507     581 .. 0.86
   2 !   16.3   0.0   1.6e-05    0.0011     150     189 ..     633     672 ..     602     678 .. 0.85
   3 !   18.6   0.0     3e-06   0.00021     148     208 ..    1306    1365 ..    1269    1378 .. 0.86

  Alignments for each domain:
  == domain 1    score: 24.7 bits;  conditional E-value: 4.1e-08
   TIGR02324  19 vklpvlkevsleveaGelvalsGksGaGkstllkslyanYlpesgrilvrheg 71 
                  ++ vl++v+++++aGelval G+ GaGks++l +l ++  + +g++ +r + 
  MMETSP1137-20121227|3670_1 521 RERFVLRSVDMRASAGELVALVGAVGAGKSSFLSALLGDMPCVGGSVALRGRC 573
                 356799*********************************99999999887665 PP

  == domain 2    score: 16.3 bits;  conditional E-value: 1.6e-05
   TIGR02324 150 fsGGekqRvniaraliadrPiLLLdePtasLdaanrkvvv 189
                  sGG + Rv +ara+ ad  + LLd+P a+ d+   ++ +
  MMETSP1137-20121227|3670_1 633 LSGGQRARVALARAVYADAEVYLLDDPLAACDSRVAAALM 672
                 69****************************9987666554 PP

  == domain 3    score: 18.6 bits;  conditional E-value: 3e-06
   TIGR02324  148 atfsGGekqRvniaraliadrPiLLLdePtasLdaanrkvvvelikeakargaaligifhd 208 
                  a fs G +q + iaral++   ++++de t+++da + + +   i++a a  a++i+i h 
  MMETSP1137-20121227|3670_1 1306 ANFSTGQRQLLCIARALLSRCSLVIMDEATSAVDAETDALIQRTIRSAFA-DATVITIAHR 1365
                  78*****************9999***************999999999876.5789999995 PP

>> TIGR01184  ntrCD: nitrate ABC transporter, ATP-binding proteins C and D
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   0.0   0.00017     0.012       2      47 ..     527     572 ..     526     581 .. 0.89
   2 !   19.0   0.0   2.6e-06   0.00018     115     158 ..     633     676 ..     624     720 .. 0.82
   3 !   29.5   0.1   1.5e-09   1.1e-07     106     209 ..    1299    1398 ..    1260    1410 .] 0.78

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 0.00017
   TIGR01184   2 kdvdleikkgefislighsgcgkstllnliaglekptsgavilegk 47 
                 + vd++ + ge+++l+g  g gks++l  + g      g+v l g+
  MMETSP1137-20121227|3670_1 527 RSVDMRASAGELVALVGAVGAGKSSFLSALLGDMPCVGGSVALRGR 572
                 68999*************************9977777889999998 PP

  == domain 2    score: 19.0 bits;  conditional E-value: 2.6e-06
   TIGR01184 115 lsggmkqrvaiaralsirpklllldepfgaldaltreelqekll 158
                 lsgg + rva+ara+    ++ lld+p+ a d+     l e+++
  MMETSP1137-20121227|3670_1 633 LSGGQRARVALARAVYADAEVYLLDDPLAACDSRVAAALMEEVI 676
                 8*******************************999999999876 PP

  == domain 3    score: 29.5 bits;  conditional E-value: 1.5e-09
   TIGR01184  106 eaadkrpeqlsggmkqrvaiaralsirpklllldepfgaldaltreelqekllkiveearvtvlmvthdvdealllsdrvvmltngpaakigeilevplerpre 209 
                  +      +++s g +q + iaral  r  l+++de   a+da t   +q  +   + +  +tv+ ++h ++ ++l +d++++l +g  a+ g   ++ + +pr 
  MMETSP1137-20121227|3670_1 1299 DEVAEDGANFSTGQRQLLCIARALLSRCSLVIMDEATSAVDAETDALIQRTIRSAFAD--ATVITIAHRLN-TVLDADKIMVLEKGELAEYGSPRDL-MAKPRG 1398
                  4444556789**********************************99999988877765..6999*****97.6889***********9999987766.445554 PP

>> TIGR00960  3a0501s02: type II secretory pathway family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.0   9.7e-06    0.0007      15      64 ..     522     571 ..     512     580 .. 0.86
   2 !   15.9   0.0   2.5e-05    0.0018     138     179 ..     632     673 ..     627     678 .. 0.92
   3 !   28.6   0.2   3.1e-09   2.3e-07     117     216 .]    1286    1383 ..    1260    1383 .. 0.81

  Alignments for each domain:
  == domain 1    score: 17.2 bits;  conditional E-value: 9.7e-06
   TIGR00960  15 aelaldnvtvkiekGelvflvGhsGaGkstllklilgiekpsaGkirvsg 64 
                 ++  l  v ++ + Gelv lvG  GaGks++l  +lg      G + + g
  MMETSP1137-20121227|3670_1 522 ERFVLRSVDMRASAGELVALVGAVGAGKSSFLSALLGDMPCVGGSVALRG 571
                 5678999**************************99998888888887765 PP

  == domain 2    score: 15.9 bits;  conditional E-value: 2.5e-05
   TIGR00960 138 qlsgGeqqrvaiaravvnkPallladePtgnlddelsrdile 179
                  lsgG++ rva+arav  + ++ l d+P +  d+ ++  ++e
  MMETSP1137-20121227|3670_1 632 FLSGGQRARVALARAVYADAEVYLLDDPLAACDSRVAAALME 673
                 59*******************************999988876 PP

  == domain 3    score: 28.6 bits;  conditional E-value: 3.1e-09
   TIGR00960  117 ervsaalekvGlkdkakalPvqlsgGeqqrvaiaravvnkPallladePtgnlddelsrdilelleevnraGttvlvathdenlveskrkrvltlskGkl 216 
                  +rv+ a     l d   ++  ++s G++q ++iara++++ +l++ de t+ +d e+   i + +++   a  tv+  +h  n v +   ++++l+kG+l
  MMETSP1137-20121227|3670_1 1286 QRVHLAHAVRSLDDEVAEDGANFSTGQRQLLCIARALLSRCSLVIMDEATSAVDAETDALIQRTIRSAF-ADATVITIAHRLNTVLDA-DKIMVLEKGEL 1383
                  44555555556667777788899**********************************999999998765.567888888998888775.56888999986 PP

>> TIGR00955  3a01204: pigment precursor permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.6   0.0   7.3e-13   5.2e-11      36     205 ..     521     671 ..     490     676 .. 0.83
   2 !   18.3   0.0     2e-06   0.00015     162     254 ..    1303    1392 ..    1270    1395 .. 0.79

  Alignments for each domain:
  == domain 1    score: 39.6 bits;  conditional E-value: 7.3e-13
   TIGR00955  36 pekellknvsGvaksGellAvlGsSGaGKtTLlnalafrsekglkvsgdvllnGekveakemraisayvqqddlfiptltvrehLmfsahlrlkrrltkkekrerveevleelgLrkcad.trigvpgrvkglSgGerkRlalaselltdPilLfcDEPTsGLDsfsaasv 205
                  e+ +l++v   a  Gel+A++G+ GaGK+  l+al       +       + G  v    +r ++ay  q    ++  +vr+++ f      +r     e+  r  +++ +l+L   +d t+ig+ g    lSgG+r R+ala  +  d  + ++D+P +  Ds  aa +
  MMETSP1137-20121227|3670_1 521 RERFVLRSVDMRASAGELVALVGAVGAGKSSFLSALLGD----MPC-----VGG-SV---ALRGRCAYTAQTPFILGA-SVRDNILFDQPYDHER----YERVLRACQLMPDLSLLPERDfTLIGDRG--VFLSGGQRARVALARAVYADAEVYLLDDPLAACDSRVAAAL 671
                 4566888899999**********************9753....333.....223.33...36889*******988875.9*******98766555....79*************998877699**776..59*********************************999876 PP

  == domain 2    score: 18.3 bits;  conditional E-value: 2e-06
   TIGR00955  162 grvkglSgGerkRlalaselltdPilLfcDEPTsGLDsfsaasvvkvLkklaqkgktviltiHQPsselfelfdkiillaeGrvvylGspeea 254 
                  ++    S G+r+ l +a  ll+  +l+++DE Ts  D+ + a + +++++ a    tvi+  H     l    dki++l++G  +  Gsp+++
  MMETSP1137-20121227|3670_1 1303 EDGANFSTGQRQLLCIARALLSRCSLVIMDEATSAVDAETDALIQRTIRS-AFADATVITIAHRLNTVL--DADKIMVLEKGELAEYGSPRDL 1392
                  344579********************************987777777776.777788999999855443..469***********99999876 PP

>> TIGR03415  ABC_choXWV_ATP: choline ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.4   0.2    0.0028       0.2      42      83 ..     528     569 ..     514     576 .. 0.89
   2 !   27.5   0.0   4.3e-09   3.1e-07     165     252 ..     633     720 ..     627     726 .. 0.93
   3 !   23.3   0.1     8e-08   5.7e-06     154     257 ..    1297    1397 ..    1265    1406 .. 0.83

  Alignments for each domain:
  == domain 1    score: 8.4 bits;  conditional E-value: 0.0028
   TIGR03415  42 dasldveeGeilvlmGlsGsGkssllravnglnpvsrGkvlv 83 
                  + ++ + Ge++ l+G  G+Gkss+l a+ g  p + G+v +
  MMETSP1137-20121227|3670_1 528 SVDMRASAGELVALVGAVGAGKSSFLSALLGDMPCVGGSVAL 569
                 56778899*********************9999999999876 PP

  == domain 2    score: 27.5 bits;  conditional E-value: 4.3e-09
   TIGR03415 165 lsGGmqqrvGlarafateadillmdePfsaldPliraklqdellelqkklkktivfvshdldealklGnriaimegGrivqlgtpeei 252
                 lsGG + rv lara+  +a++ l+d+P++a d  + a l +e++     lk  +  +s    e+l   ++i ++++G +   gt ee+
  MMETSP1137-20121227|3670_1 633 LSGGQRARVALARAVYADAEVYLLDDPLAACDSRVAAALMEEVIGPNGLLKDKLRILSTSNLESLGGADQIHVLRNGEVQESGTYEEL 720
                 9**********************************************99999999999988899999999*******99999998886 PP

  == domain 3    score: 23.3 bits;  conditional E-value: 8e-08
   TIGR03415  154 laeWadkkvgelsGGmqqrvGlarafateadillmdePfsaldPliraklqdellelqkklkktivfvshdldealklGnriaimegGrivqlgtpeeivlkPa 257 
                  l++   +   ++s G +q + +ara+   + +++mde  sa+d    a +q  + +  +    t++ ++h l+  l   ++i ++e+G +  +g+p+++++kP 
  MMETSP1137-20121227|3670_1 1297 LDDEVAEDGANFSTGQRQLLCIARALLSRCSLVIMDEATSAVDAETDALIQRTIRS--AFADATVITIAHRLNTVLD-ADKIMVLEKGELAEYGSPRDLMAKPR 1397
                  5555556667899******************************9888877776544..33468**********9998.589*********************97 PP

>> TIGR03411  urea_trans_UrtD: urea ABC transporter, ATP-binding protein UrtD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.0   7.2e-05    0.0052      18      64 ..     526     572 ..     522     584 .. 0.90
   2 ?    4.9   0.0     0.055       3.9     143     190 ..     632     676 ..     622     727 .. 0.66
   3 !   28.0   0.0   4.6e-09   3.3e-07     121     230 ..    1285    1393 ..    1260    1400 .. 0.86

  Alignments for each domain:
  == domain 1    score: 14.3 bits;  conditional E-value: 7.2e-05
   TIGR03411  18 lndlslsveegelrviiGpnGaGkttllDvitGktrpdeGsvlfkgk 64 
                 l++++++ ++gel +++G+ GaGk+ +l ++ G +    Gsv ++g+
  MMETSP1137-20121227|3670_1 526 LRSVDMRASAGELVALVGAVGAGKSSFLSALLGDMPCVGGSVALRGR 572
                 67899999****************************99***999876 PP

  == domain 2    score: 4.9 bits;  conditional E-value: 0.055
   TIGR03411 143 lLshGqkqwLeigmllvqepkllllDePvaGmtdeetektaellkela 190
                  Ls Gq+ ++ ++  +  ++++ llD+P a   +   +  a l++e+ 
  MMETSP1137-20121227|3670_1 632 FLSGGQRARVALARAVYADAEVYLLDDPLAACDS---RVAAALMEEVI 676
                 69**************************997543...34444444444 PP

  == domain 3    score: 28.0 bits;  conditional E-value: 4.6e-09
   TIGR03411  121 kerieevleligLeekadkkaglLshGqkqwLeigmllvqepkllllDePvaGmtdeetektaellkelakersvvvvehDmefvrelaekvtvlheGkvlaeGsldevq 230 
                   +r++ + ++ +L++++ +  ++ s Gq+q L i+  l+ + +l+++De ++ + +e  + + + +++   + +v+ + h ++ v + a+k+ vl++G++   Gs  ++ 
  MMETSP1137-20121227|3670_1 1285 LQRVHLAHAVRSLDDEVAEDGANFSTGQRQLLCIARALLSRCSLVIMDEATSAVDAETDALIQRTIRSAFADATVITIAHRLNTVLD-ADKIMVLEKGELAEYGSPRDLM 1393
                  46677677777899**************************************99999999999*********************988.6789*******99888866655 PP

>> TIGR03269  met_CoM_red_A2: methyl coenzyme M reductase system, component A2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   0.0     0.012      0.88      14      48 ..     524     558 ..     519     566 .. 0.88
   2 !   15.2   0.0   1.8e-05    0.0013     169     257 ..     633     721 ..     572     738 .. 0.82
   3 !   25.7   0.1   1.2e-08   8.6e-07     148     259 ..    1283    1395 ..    1263    1408 .. 0.70

  Alignments for each domain:
  == domain 1    score: 5.8 bits;  conditional E-value: 0.012
   TIGR03269  14 evlknisleleeGevlGilGksGaGksvllhllrG 48 
                  vl++++++   Ge++ ++G  GaGks +l  l G
  MMETSP1137-20121227|3670_1 524 FVLRSVDMRASAGELVALVGAVGAGKSSFLSALLG 558
                 58999**********************99988766 PP

  == domain 2    score: 15.2 bits;  conditional E-value: 1.8e-05
   TIGR03269 169 lsGGekqrvvlarqlakeplllladeptGtldpkta.klvhealk.eavkeedislvltshwpeviedlsdkaillekGeiveeGepeevv 257
                 lsGG++ rv lar +  +  ++l d+p  + d + a  l+ e++  ++  ++++ ++ ts    +    +d+  +l +Ge++e G+ ee+ 
  MMETSP1137-20121227|3670_1 633 LSGGQRARVALARAVYADAEVYLLDDPLAACDSRVAaALMEEVIGpNGLLKDKLRILSTSNLESLG--GADQIHVLRNGEVQESGTYEELA 721
                 8*******************************9876156777774368889999999999876653..4788899999***9999998865 PP

  == domain 3    score: 25.7 bits;  conditional E-value: 1.2e-08
   TIGR03269  148 ravelleevklehrit.......hiardlsGGekqrvvlarqlakeplllladeptGtldpktaklvhealkeavkeedislvltshwpeviedlsdkaillekGeiveeGepeevvak 259 
                   a   l++v+l h +            ++s G++q + +ar l  +  l++ de t ++d +t  l+  +++ a  +   +++  +h  + + d +dk ++lekGe+ e G+p +++ak
  MMETSP1137-20121227|3670_1 1283 AA---LQRVHLAHAVRslddevaEDGANFSTGQRQLLCIARALLSRCSLVIMDEATSAVDAETDALIQRTIRSAFADA--TVITIAHRLNTVLD-ADKIMVLEKGELAEYGSPRDLMAK 1395
                  33...34444444443111100033456899999999*****9999999999***************99999998765..44555565554444.799999*********999998876 PP

>> TIGR03522  GldA_ABC_ATP: gliding motility-associated ABC transporter ATP-binding subunit GldA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.8   0.0   3.9e-08   2.8e-06      17     231 ..     525     734 ..     520     745 .. 0.77
   2 !   19.3   0.0   1.9e-06   0.00014     123     210 ..    1297    1383 ..    1280    1396 .. 0.87

  Alignments for each domain:
  == domain 1    score: 24.8 bits;  conditional E-value: 3.9e-08
   TIGR03522  17 aldevsfeaekGeivGflGPnGaGkstlmkiltgylkadsGsvavagedvlknslevrkniGylPehnPlyldlyvre.ylefsaalyklkgrk.lkkrveelielvGlkaeqhkkigalskGyrqrvGlakallhdPkvlildePttGldPnqlvei.revi..keiakdktvilsthimqevealcdrviiinkGkivadkkleelkaaek..kkvieve 231
                 +l +v ++a  Ge+v ++G  GaGks+ +  l g ++  +Gsva+ g  + ++      ++G     n l+ + y +e y +   a   + +   l +r   li   G+          ls G r rv la+a+  d +v +ld+P +  d     ++  evi  + + kdk  ilst  +  +    d++ ++ +G++  + + eel  ++   ++ +++ 
  MMETSP1137-20121227|3670_1 525 VLRSVDMRASAGELVALVGAVGAGKSSFLSALLGDMPCVGGSVALRGRCAYTAQ--TPFILGASVRDNILFDQPYDHErYERVLRACQLMPDLSlLPERDFTLIGDRGV---------FLSGGQRARVALARAVYADAEVYLLDDPLAACDSRVAAALmEEVIgpNGLLKDKLRILSTSNLESLGG-ADQIHVLRNGEVQESGTYEELARTDGafSRLLQLM 734
                 788999*****************************************9887764..45688999999999999998873445555555555432033333333333332.........49*******************************987766415788444688*********98866654.79999999999999999999987775444455555 PP

  == domain 2    score: 19.3 bits;  conditional E-value: 1.9e-06
   TIGR03522  123 lkaeqhkkigalskGyrqrvGlakallhdPkvlildePttGldPnqlveirevikeiakdktvilsthimqevealcdrviiinkGki 210 
                  l  e     +++s G rq   +a+all   +++i+de t+ +d +    i++ i++   d tvi  +h ++ v    d++++++kG++
  MMETSP1137-20121227|3670_1 1297 LDDEVAEDGANFSTGQRQLLCIARALLSRCSLVIMDEATSAVDAETDALIQRTIRSAFADATVITIAHRLNTVLD-ADKIMVLEKGEL 1383
                  555666666789********************************************************9999865.699999999986 PP

>> TIGR02633  xylG: D-xylose ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.6   0.0   0.00042      0.03      17      53 ..     526     562 ..     519     575 .. 0.90
   2 !    9.2   0.0    0.0011     0.077     404     490 ..     633     720 ..     620     724 .. 0.80
   3 !   26.7   0.0   5.4e-09   3.9e-07     124     218 ..    1290    1382 ..    1270    1404 .. 0.80

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 0.00042
   TIGR02633  17 ldnidlklraGeivslcGenGaGkstlmkvlsgvyph 53 
                 l ++d++  aGe+v+l G  GaGks+++  l g  p+
  MMETSP1137-20121227|3670_1 526 LRSVDMRASAGELVALVGAVGAGKSSFLSALLGDMPC 562
                 7889**********************99999988887 PP

  == domain 2    score: 9.2 bits;  conditional E-value: 0.0011
   TIGR02633 404 lsGGnqqkavlakllllnprvlildeptrGvdvGakyeiy.kli..nqlaqeGvaiivvsselaevlGlsdrvlvigeGklkadlvndel 490
                 lsGG++ +  la+ +  + +v +ld+p    d    + +   +i  n l ++ + i  +s+   e lG +d++ v+ +G+++ +   +el
  MMETSP1137-20121227|3670_1 633 LSGGQRARVALARAVYADAEVYLLDDPLAACDSRVAAALMeEVIgpNGLLKDKLRI--LSTSNLESLGGADQIHVLRNGEVQESGTYEEL 720
                 9*******************************765555441444335567776655..55556799***************987665555 PP

  == domain 3    score: 26.7 bits;  conditional E-value: 5.4e-09
   TIGR02633  124 llrelkldasnvtrpvsdlGlGqqqlveiakalnkqvrllildepsaslteketeilld.iirdlkakgvacvyishkleevkavsdtisvirdGq 218 
                  l + ++  +++v+   +++ +Gq+ql+ ia+al  +  l+i+de ++++ ++et+ l++  ir     + + + i+h+l+ v   +d+i v+  G+
  MMETSP1137-20121227|3670_1 1290 LAHAVRSLDDEVAEDGANFSTGQRQLLCIARALLSRCSLVIMDEATSAV-DAETDALIQrTIRSA-FADATVITIAHRLNTVLD-ADKIMVLEKGE 1382
                  555666667778888899***************************9997.567888876255554.5567899********976.79999999987 PP

>> TIGR03719  ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.0   0.0    0.0057      0.41     334     380 ..     522     568 ..     510     580 .. 0.85
   2 !   14.1   0.0     4e-05    0.0028     444     483 ..     633     672 ..     627     680 .. 0.79
   3 !   21.1   0.1   3.1e-07   2.2e-05     137     239 ..    1282    1386 ..    1267    1390 .. 0.74

  Alignments for each domain:
  == domain 1    score: 7.0 bits;  conditional E-value: 0.0057
   TIGR03719 334 dklliddlsfklpkggivGviGpnGaGkstlfklitgkekpdsGelk 380
                 ++ ++  ++++  +g +v ++G+ GaGks ++  + g+     G++ 
  MMETSP1137-20121227|3670_1 522 ERFVLRSVDMRASAGELVALVGAVGAGKSSFLSALLGDMPCVGGSVA 568
                 68889999999999*****************9999998777777665 PP

  == domain 2    score: 14.1 bits;  conditional E-value: 4e-05
   TIGR03719 444 lsGGernrvhlakllkeggnvllldePtndldvetlrale 483
                 lsGG+r rv la+ +  +++v lld+P    d     al 
  MMETSP1137-20121227|3670_1 633 LSGGQRARVALARAVYADAEVYLLDDPLAACDSRVAAALM 672
                 8999999999999999999999999998877777666664 PP

  == domain 3    score: 21.1 bits;  conditional E-value: 3.1e-07
   TIGR03719  137 wdldskleiamdalrlpeed..akveklsGGekrrvalcrlllekPdlllldePtnhldaesvaWlekflke.y.kGtvvavthdry.fldnvaeWileldrGegipy 239 
                  w   +++++a +a+r  +++   + +++s G+++ + ++r ll++  l+++de t  +dae+ a +++ +++ + + tv+ ++h     ld  a+ i+ l++Ge   y
  MMETSP1137-20121227|3670_1 1282 WAALQRVHLA-HAVRSLDDEvaEDGANFSTGQRQLLCIARALLSRCSLVIMDEATSAVDAETDALIQRTIRSaFaDATVITIAHRLNtVLD--ADKIMVLEKGELAEY 1386
                  5555555554.34444333311456799****************************************99863535789999996431333..677888888887766 PP

>> TIGR00954  3a01203: peroxysomal long chain fatty acyl transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.6   0.0   4.7e-08   3.4e-06     468     615 ..     525     664 ..     520     690 .. 0.79
   2 !   19.0   0.1   1.2e-06   8.6e-05     557     639 ..    1283    1365 ..    1273    1371 .. 0.83

  Alignments for each domain:
  == domain 1    score: 23.6 bits;  conditional E-value: 4.7e-08
   TIGR00954 468 lieeLsfevksGnhlLiiGPnGcGKsslfRilgelWPvygglltkpeegklFyvPqrPYmslgtlRdqiiYPdssedfkerglsdkdLeqiLeevkLedllereggwdavqdWkdvLsgGekqRiamARlfyHkPkfavLDEctsAvs 615
                 ++ ++ ++   G+ + ++G  G GKss+   l +  P +gg      +g+  y  q P++   ++Rd i++ +  +    ++  ++ L +     +L+ l er   +  + d    LsgG++ R+a+AR  y   +  +LD+  +A  
  MMETSP1137-20121227|3670_1 525 VLRSVDMRASAGELVALVGAVGAGKSSFLSALLGDMPCVGGSVAL--RGRCAYTAQTPFILGASVRDNILFDQPYD----HERYERVLRACQLMPDLSLLPER--DFTLIGDRGVFLSGGQRARVALARAVYADAEVYLLDDPLAACD 664
                 5667778888999**************998888888****98766..66667********999******9955443....23334444444444455555555..5889************************999999998666654 PP

  == domain 2    score: 19.0 bits;  conditional E-value: 1.2e-06
   TIGR00954  557 qiLeevkLedllereggwdavqdWkdvLsgGekqRiamARlfyHkPkfavLDEctsAvsvdvEdklyelakev..gitllsvshr 639 
                  + L+ v+L + ++     d v++     s G++q + +AR +  +   +++DE+tsAv  + +  + ++++++  + t+++++hr
  MMETSP1137-20121227|3670_1 1283 AALQRVHLAHAVRSL-D-DEVAEDGANFSTGQRQLLCIARALLSRCSLVIMDEATSAVDAETDALIQRTIRSAfaDATVITIAHR 1365
                  667777777777532.2.5667777789****************************************99985337899****99 PP

>> TIGR01288  nodI: nodulation ABC transporter NodI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   0.1      0.02       1.4      17      63 ..     523     569 ..     512     579 .. 0.84
   2 !   11.4   0.0   0.00034     0.024     135     178 ..     632     675 ..     617     720 .. 0.75
   3 !   25.9   0.1   1.4e-08   9.8e-07     126     224 ..    1298    1394 ..    1253    1400 .. 0.81

  Alignments for each domain:
  == domain 1    score: 5.6 bits;  conditional E-value: 0.02
   TIGR01288  17 kvvvndlsftiaagecfgllgpngagkstiarlvlglispdegkitv 63 
                 + v+  + +  +age   l+g  gagks+    +lg ++   g +++
  MMETSP1137-20121227|3670_1 523 RFVLRSVDMRASAGELVALVGAVGAGKSSFLSALLGDMPCVGGSVAL 569
                 567777888899******************99999988877777665 PP

  == domain 2    score: 11.4 bits;  conditional E-value: 0.00034
   TIGR01288 135 dlsggmkrrltlaralindpqllildepttgldpharhliwerl 178
                  lsgg + r++lara+  d ++ +ld+p +  d      + e +
  MMETSP1137-20121227|3670_1 632 FLSGGQRARVALARAVYADAEVYLLDDPLAACDSRVAAALMEEV 675
                 69*****************************9988655555544 PP

  == domain 3    score: 25.9 bits;  conditional E-value: 1.4e-08
   TIGR01288  126 eskadvrvadlsggmkrrltlaralindpqllildepttgldpharhliwerlrsllargktilltthlmeeaerlcdrlcvleagrkiaegrpdalid 224 
                  +       a++s g ++ l +aral+    l+i+de t+ +d  +  li   +rs +a    i + +h ++      d++ vle+g     g p  l+ 
  MMETSP1137-20121227|3670_1 1298 DDEVAEDGANFSTGQRQLLCIARALLSRCSLVIMDEATSAVDAETDALIQRTIRSAFADATVITI-AHRLNTV-LDADKIMVLEKGELAEYGSPRDLMA 1394
                  45555566899**********************************************98766655.5555443.4479********9988899988875 PP

>> TIGR02323  CP_lyasePhnK: phosphonate C-P lyase system protein PhnK
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.5   0.0    0.0019      0.14      25      64 ..     534     573 ..     520     589 .. 0.88
   2 ?   -1.3   0.0       3.8   2.7e+02     142     176 ..     633     669 ..     628     730 .. 0.64
   3 !   28.7   0.0   2.6e-09   1.9e-07     138     226 ..    1304    1393 ..    1272    1406 .. 0.80

  Alignments for each domain:
  == domain 1    score: 9.5 bits;  conditional E-value: 0.0019
   TIGR02323  25 ypGevlgivGesGsGkstllkalaarlladaGevtyesrs 64 
                   Ge++++vG  G+Gks++l+al + +    G+v  + r 
  MMETSP1137-20121227|3670_1 534 SAGELVALVGAVGAGKSSFLSALLGDMPCVGGSVALRGRC 573
                 579*****************************99988775 PP

  == domain 2    score: -1.3 bits;  conditional E-value: 3.8
   TIGR02323 142 fsGGmqqrlqiarnlvtrprlvfm.eptGGl.vsvqa 176
                 +sGG + r+ +ar++ +   + ++ +p       v a
  MMETSP1137-20121227|3670_1 633 LSGGQRARVALARAVYADAEVYLLdDPLAACdSRVAA 669
                 6999999999999999888887776776665233333 PP

  == domain 3    score: 28.7 bits;  conditional E-value: 2.6e-09
   TIGR02323  138 kpaafsGGmqqrlqiarnlvtrprlvfmeptGGlvsvqarllllrglvrelg.laviivthlavarllaqrllvmkqGrvvesGltrvlp 226 
                    a+fs G +q l iar+l++r  lv+m+ +   v  ++  l+ r++   +   +vi ++h   + l a++++v+++G++ e G  r l 
  MMETSP1137-20121227|3670_1 1304 DGANFSTGQRQLLCIARALLSRCSLVIMDEATSAVDAETDALIQRTIRSAFAdATVITIAHRLNTVLDADKIMVLEKGELAEYGSPRDLM 1393
                  5679************************7777888999999999998877651567779996666799**************99876664 PP

>> TIGR01978  sufC: FeS assembly ATPase SufC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.0   2.6e-06   0.00019      12      64 ..     522     572 ..     518     579 .. 0.86
   2 ?    0.8   0.0       0.8        58     146     230 ..     634     718 ..     628     724 .. 0.62
   3 !   17.7   0.0   5.6e-06    0.0004     144     229 ..    1307    1389 ..    1273    1395 .. 0.81

  Alignments for each domain:
  == domain 1    score: 18.8 bits;  conditional E-value: 2.6e-06
   TIGR01978  12 dkeiLkglnlevkkGevhaimGpnGsGkstLskvlaghekyevtsGeiklkgq 64 
                 ++ +L+++++  ++Ge++a++G+ G+Gks   ++l g+  +  + G+++l+g+
  MMETSP1137-20121227|3670_1 522 ERFVLRSVDMRASAGELVALVGAVGAGKSSFLSALLGDMPC--VGGSVALRGR 572
                 6779********************************98654..6777777765 PP

  == domain 2    score: 0.8 bits;  conditional E-value: 0.8
   TIGR01978 146 sGGekkrneilqlallePklaiLDeiDsGlDvDalkivaegvnklreeekalliithyerllelikPdvvhvlldGrivksGdve 230
                 sGG + r  + +    + ++ +LD+  +  D     +++e+v   +   k  l i   ++l +l   d++hvl +G++ +sG  e
  MMETSP1137-20121227|3670_1 634 SGGQRARVALARAVYADAEVYLLDDPLAACDSRVAAALMEEVIGPNGLLKDKLRILSTSNLESLGGADQIHVLRNGEVQESGTYE 718
                 677777777777777777777777766666654444444444333333333333334455666667899*********9999865 PP

  == domain 3    score: 17.7 bits;  conditional E-value: 5.6e-06
   TIGR01978  144 GfsGGekkrneilqlallePklaiLDeiDsGlDvDalkivaegvnklreeekalliithyerllelikPdvvhvlldGrivksGdv 229 
                   fs G ++   i + +l + +l+i+De+ s +D ++  ++ +++ +   +  +  +it  +rl   +  d+++vl +G++++ G+ 
  MMETSP1137-20121227|3670_1 1307 NFSTGQRQLLCIARALLSRCSLVIMDEATSAVDAETDALIQRTIRSAFAD-AT--VITIAHRLNTVLDADKIMVLEKGELAEYGSP 1389
                  49********************************9999999999765543.44..5555568999****************99975 PP

>> TIGR03740  galliderm_ABC: lantibiotic protection ABC transporter, ATP-binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.2   0.0   0.00032     0.023      12     156 ..     522     664 ..     518     728 .. 0.70
   2 !   23.3   0.0   1.3e-07     9e-06     113     203 ..    1296    1384 ..    1267    1404 .. 0.84

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 0.00032
   TIGR03740  12 kqavvnnvslkvkknsvygllGpnGaGkstllklltGllrktsGeilldgr.ewtrkdlkkiGsliesPalyenltarenlkvrtlllglpesrieevlkivdlentekkkakqfslGmkqrlGiaiallnkPkllildePtnGld 156
                 ++ v+ +v+++    ++ +l+G  GaGks+ l  l G +    G++ l gr  +t +    +G+ + +  l+++   +e  + +      +     ++l   d++ ++ + +  +s G + r+ +a a+  + ++ +ld+P    d
  MMETSP1137-20121227|3670_1 522 ERFVLRSVDMRASAGELVALVGAVGAGKSSFLSALLGDMPCVGGSVALRGRcAYTAQTPFILGASVRDNILFDQPYDHERYERVLRAC--QLMPDLSLLPERDFTLIGDRGV-FLSGGQRARVALARAVYADAEVYLLDDPLAACD 664
                 788999****************************************999983466666666777777777777766666544332222..2222345666666666666554.356677777777777777777777777766666 PP

  == domain 2    score: 23.3 bits;  conditional E-value: 1.3e-07
   TIGR03740  113 dlentekkkakqfslGmkqrlGiaiallnkPkllildePtnGldPlGiqelreliksfpekGitvilsshilsevelladhiGiiseGklk 203 
                   l+++      +fs G +q l ia all +  l+i+de t  +d      +++ i+s   +  tvi  +h l  v   ad+i ++++G+l 
  MMETSP1137-20121227|3670_1 1296 SLDDEVAEDGANFSTGQRQLLCIARALLSRCSLVIMDEATSAVDAETDALIQRTIRSAFAD-ATVITIAHRLNTVL-DADKIMVLEKGELA 1384
                  566666777899********************************99988888899987655.58888899999985.59********9985 PP

>> TIGR01194  cyc_pep_trnsptr: cyclic peptide transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.3   0.0   1.6e-08   1.1e-06     350     545 ..     519     709 ..     471     715 .. 0.76
   2 !    7.0   0.0    0.0054      0.39     444     543 ..    1281    1379 ..    1261    1385 .. 0.71

  Alignments for each domain:
  == domain 1    score: 25.3 bits;  conditional E-value: 1.6e-08
   TIGR01194 350 essegfalGpidlriasGelvyivGenGcGkstliklllGlyipqeGellldGeav.sdesrddyrdlfsavfadyylfddlvqpdekkqasldqattylsrleledkvkvedlnystttdlstGqrkrlalvnayleerpvllldewaadqdpafkrvfyeell.pdlkrrGktilvishddryfeladrlikladG 545
                  + e f l  +d+r + Gelv +vG  G Gks+++  llG      G + l G    ++++      ++ a   d  lfd+  +  +++   + +a + +  l l    +    +      ls Gqr r+al  a   +  v+lld+  a  d      + ee++ p+   + k  ++ + + + +  ad++  l +G
  MMETSP1137-20121227|3670_1 519 GARERFVLRSVDMRASAGELVALVGAVGAGKSSFLSALLGDMPCVGGSVALRGRCAyTAQT----PFILGASVRDNILFDQPYD--HERYERVLRACQLMPDLSLLPERDFTLIGDR-GVFLSGGQRARVALARAVYADAEVYLLDDPLAACDSRVAAALMEEVIgPNGLLKDKLRILSTSNLESLGGADQIHVLRNG 709
                 56789************************************9999********86414444....347888899******9776..5555667778888888877555544444433.456**************************999999888888888876455555555555555555566666666655555 PP

  == domain 2    score: 7.0 bits;  conditional E-value: 0.0054
   TIGR01194  444 attylsrleledkvkvedlnys.tttdlstGqrkrlalvnayleerpvllldewaadqdpafkrvfyeellpdlkrrGktilvishddryfeladrlikla 543 
                      l+r+ l++ v+  d + +   +++stGqr+ l +  a l    ++++de ++  d     +    +   +     t++ i+h  +    ad+++ l 
  MMETSP1137-20121227|3670_1 1281 MWAALQRVHLAHAVRSLDDEVAeDGANFSTGQRQLLCIARALLSRCSLVIMDEATSAVDAETDALIQRTIRSAF--ADATVITIAHRLNTVLDADKIMVLE 1379
                  44679*********8777776615789**************************887777655555544444433..2346666666655555566665555 PP

>> TIGR00956  3a01205: pleiotropic drug resistance family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.5   0.0   0.00094     0.068      73     109 ..     522     558 ..     506     591 .. 0.69
   2 ?    4.1   0.0      0.02       1.4     208     245 ..     629     668 ..     620     685 .. 0.77
   3 !   17.3   0.0     2e-06   0.00015     895     980 ..    1301    1382 ..    1291    1389 .. 0.81

  Alignments for each domain:
  == domain 1    score: 8.5 bits;  conditional E-value: 0.00094
   TIGR00956  73 kfdilkdvdglikpgelvvvLGrPgsGcstlLksias 109
                 ++ +l++vd  + +gelv ++G  g+G+s++L ++ +
  MMETSP1137-20121227|3670_1 522 ERFVLRSVDMRASAGELVALVGAVGAGKSSFLSALLG 558
                 4445555555555566665556666666655555544 PP

  == domain 2    score: 4.1 bits;  conditional E-value: 0.02
   TIGR00956 208 RGv..sGGerkRvsiaevlvakakiqcwDnatrGLDsata 245
                 RGv  sGG+r Rv++a ++ a+a+++++D+     Ds  a
  MMETSP1137-20121227|3670_1 629 RGVflSGGQRARVALARAVYADAEVYLLDDPLAACDSRVA 668
                 5544488999999999988888888888888777777655 PP

  == domain 3    score: 17.3 bits;  conditional E-value: 2e-06
   TIGR00956  895 vGvpGeGLnveqRkrltigveLvAkPklllFlDePtsGLDsqtawsivkllrkladaGqailCtiHqPsailleeFDrLLllqkGG 980 
                  v + G   ++ qR+ l i+  L  +  +l+ +De ts +D+ t + i +++r       a + ti     ++l+  D++++l+kG 
  MMETSP1137-20121227|3670_1 1301 VAEDGANFSTGQRQLLCIARALLSRC-SLVIMDEATSAVDAETDALIQRTIRSAFA--DATVITIAHRLNTVLD-ADKIMVLEKGE 1382
                  566788999****************9.9999*********************7543..3455566555555565.49999999984 PP

>> TIGR01257  rim_protein: rim ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.4   0.0    0.0003     0.022     957    1105 ..     537     676 ..     522     748 .. 0.71
   2 !   11.4   0.0   7.3e-05    0.0052    1053    1145 ..    1299    1390 ..    1275    1403 .. 0.86

  Alignments for each domain:
  == domain 1    score: 9.4 bits;  conditional E-value: 0.0003
   TIGR01257  957 qitaflghngagktttlsiltgllpptsgtvlvggkdietnldavrqslgmcpqhnilfhhltvaehilfyaqlkgrsweeaqlemeamledtglhhkrneeaqdlsgglqrklsvaiafvgdakvvvldeptsgvdpysrrsiwdlll 1105
                  ++ a++g  gagk++ ls l g +p   g+v + g+   t+       lg   + nilf +     h  +   l       +ql  +  l          +    lsgg + ++++a a+  da v +ld+p +  d     ++ + ++
  MMETSP1137-20121227|3670_1  537 ELVALVGAVGAGKSSFLSALLGDMPCVGGSVALRGRCAYTAQT--PFILGASVRDNILFDQPYD--HERYERVL-----RACQLMPDLSLLPERDFTLIGDRGVFLSGGQRARVALARAVYADAEVYLLDDPLAACDSRVAAALMEEVI 676 
                  67899*******************************9998765..4579**********97643..33333333.....333443333222222223334456789**************************99999877766665554 PP

  == domain 2    score: 11.4 bits;  conditional E-value: 7.3e-05
   TIGR01257 1053 hkrneeaqdlsgglqrklsvaiafvgdakvvvldeptsgvdpysrrsiwdlllkyrsgrtiimsthhmdeadllgdriaiisqgrlycsgtpl 1145
                      e+  ++s g ++ l +a a++  + +v++de ts vd  +   i   +    +  t+i  +h ++ + l  d+i ++ +g l   g+p 
  MMETSP1137-20121227|3670_1 1299 DEVAEDGANFSTGQRQLLCIARALLSRCSLVIMDEATSAVDAETDALIQRTIRSAFADATVITIAHRLN-TVLDADKIMVLEKGELAEYGSPR 1390
                  455678888999*9999***************************9999999999999999999999886.56889*********998888774 PP

>> TIGR00630  uvra: excinuclease ABC subunit A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.0      0.11       8.1      11     650 ..     525     553 ..     515     563 .. 0.58
   2 ?    1.9   0.0      0.15        10     819     859 ..     623     660 ..     599     676 .. 0.73
   3 ?    1.5   0.0      0.18        13     829     903 ..    1308    1378 ..    1301    1388 .. 0.80

  Alignments for each domain:
  == domain 1    score: 2.2 bits;  conditional E-value: 0.11
   TIGR00630  11 nLknidvelprdklvvitGlsGsGkssLafdtiyaeGqrrYveslsayarqfLgkldkPdvdsieGLsPaisidqkttsknprstvGtvteiydYlrllfarvGkaycpecgekiekqsaeqivdeilelpegkrvillaPvvrerkgefkklleklkkqGfarvrvdgevveleeelklekqkkhtidvvidrlkvkeeerkrlaesvetalklseGlleveledeeesakkeelfskkaaleeaglsleeleprlfsfnsplgaCpeCkGlGvkleldpekivdeeelsleeaaivalkksassyylqilkslaeklgfdldtplkdlseeakkavLyGsdeeveevkrekekekarlkkefeGvleelerryketeseaarealekflsekaCpsCkgtrlkkealavkvegksiadvselsveealeffeellkleeeekkiaeevlkeikerlkfLvdvGLdYLsleraaetlsGGeaqrirlatqiGsgLvGvlYvlDePsiGLhqrDnerLietlkrlrdlGntlivvehDeetireaDyvvdiGPgaGehGGevvasgsleellkkkesltgqYlsgkkkievPkerrkaegkvltlkgakennlkdidvsiplglltvitGvsgsGkstLi 650
                  L+++d++ +  +lv + G  G+Gkss                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ++
  MMETSP1137-20121227|3670_1 525 VLRSVDMRASAGELVALVGAVGAGKSS-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------FL 553
                 355555555555555555555555555...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................44 PP

  == domain 2    score: 1.9 bits;  conditional E-value: 0.15
   TIGR00630 819 YiklGqpattLsGGeaqrvkLakeLskrstgktlyilDePt 859
                 +  +G    +LsGG   rv La+ + + +    +y+lD+P 
  MMETSP1137-20121227|3670_1 623 FTLIGDRGVFLSGGQRARVALARAVYADA---EVYLLDDPL 660
                 55678888889999999999988876654...578888885 PP

  == domain 3    score: 1.5 bits;  conditional E-value: 0.18
   TIGR00630  829 LsGGeaqrvkLakeLskrstgktlyilDePttGLhfdDikkLlevlqrlvdkGntvvviehnldviksaDyiidl 903 
                  +s G  q + +a+ L  r     l i+De t  +  +    L++   r + +  tv+ i h l+ +  aD i+ l
  MMETSP1137-20121227|3670_1 1308 FSTGQRQLLCIARALLSRC---SLVIMDEATSAVDAE-TDALIQRTIRSAFADATVITIAHRLNTVLDADKIMVL 1378
                  6778888888888887765...69999**99999865.5677777777777889****************99755 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1410 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       188  (0.0458313); expected 82.0 (0.02)
Passed bias filter:                      126  (0.0307167); expected 82.0 (0.02)
Passed Vit filter:                        81  (0.0197465); expected 4.1 (0.001)
Passed Fwd filter:                        57  (0.0138957); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              57  [number of targets reported over threshold]
# CPU time: 3.04u 0.19s 00:00:03.23 Elapsed: 00:00:02.92
# Mc/sec: 637.34
//
Query:       MMETSP1137-20121227|3671_1  [L=645]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.2e-24   83.8   1.0    3.2e-24   83.8   0.7    1.6  2  TIGR02349 DnaJ_bact: chaperone protein DnaJ
    6.7e-15   52.3   0.1    8.9e-15   51.9   0.1    1.1  1  TIGR03835 termin_org_DnaJ: terminal organelle assembly protein TopJ


Domain annotation for each model (and alignments):
>> TIGR02349  DnaJ_bact: chaperone protein DnaJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.1      0.27   5.6e+02      49      79 ..     147     177 ..     146     182 .. 0.83
   2 !   83.8   0.7   1.6e-27   3.2e-24       2      81 ..     189     268 ..     188     333 .. 0.72

  Alignments for each domain:
  == domain 1    score: -2.5 bits;  conditional E-value: 0.27
   TIGR02349  49 AyevLsdeekraqYDqfghagleggagggga 79 
                 Ay   +d ek ++ D+f+++  eg++++g++
  MMETSP1137-20121227|3671_1 147 AYSLVEDAEKVRHLDEFASSSREGSSQEGAR 177
                 89999*************9999998766544 PP

  == domain 2    score: 83.8 bits;  conditional E-value: 1.6e-27
   TIGR02349   2 YYeiLgvskdAseeeikkAYrklakkyHPDrnkgekeaeekfkeineAyevLsdeekraqYDqfghagleggaggggagf 81 
                 YYe Lgv ++As++eikkAY k a + HPD+n+++++a+e+f++i+eAy+vL d++ r++YD  g+a le+ +  +++ f
  MMETSP1137-20121227|3671_1 189 YYERLGVAHTASTDEIKKAYYKRALRLHPDKNANDEAAKEQFQQISEAYQVLADDKLREKYDTHGQASLEQVNLMDAGVF 268
                 *********************************************************************99766533333 PP

>> TIGR03835  termin_org_DnaJ: terminal organelle assembly protein TopJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.9   0.1   4.3e-18   8.9e-15       4      75 ..     189     261 ..     186     309 .. 0.89

  Alignments for each domain:
  == domain 1    score: 51.9 bits;  conditional E-value: 4.3e-18
   TIGR03835   4 yyevLgidrDadeqeikkafrkLakkyhPDrnka.adaakifaeineandvLsnPkkraryDkyGhDGvDred 75 
                 yye Lg+   a  +eikka+ k a + hPD+n +   a++ f+ i ea++vL++ k r++yD +G   +++ +
  MMETSP1137-20121227|3671_1 189 YYERLGVAHTASTDEIKKAYYKRALRLHPDKNANdEAAKEQFQQISEAYQVLADDKLREKYDTHGQASLEQVN 261
                 ********************************884666779************************98887654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (645 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       170  (0.0414432); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.18s 00:00:00.63 Elapsed: 00:00:00.37
# Mc/sec: 2300.89
//
Query:       MMETSP1137-20121227|3672_1  [L=303]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (303 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       126  (0.0307167); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.18s 00:00:00.41 Elapsed: 00:00:00.30
# Mc/sec: 1333.09
//
Query:       MMETSP1137-20121227|3673_1  [L=543]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.6e-24   82.9  60.8    7.9e-15   52.1   0.0    4.8  3  TIGR01642 U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor
    9.6e-14   49.1   0.0    1.7e-12   44.9   0.0    5.1  5  TIGR01622 SF-CC1: splicing factor, CC1-like family
     0.0059   13.2   0.0     0.0059   13.2   0.0    1.8  2  TIGR01645 half-pint: poly-U binding splicing factor, half-pint family
  ------ inclusion threshold ------
        8.7    1.6  28.0         11    1.2  19.4    1.1  1  TIGR00927 2A1904: K+-dependent Na+/Ca+ exchanger


Domain annotation for each model (and alignments):
>> TIGR01642  U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?  -21.4  30.3         4   4.1e+03      12     101 ..      37     127 ..       3     137 .. 0.47
   2 !   34.8  43.7   1.4e-12   1.5e-09       1     271 [.     108     388 ..     103     401 .. 0.73
   3 !   52.1   0.0   7.7e-18   7.9e-15     410     506 ..     447     537 ..     438     540 .. 0.92

  Alignments for each domain:
  == domain 1    score: -21.4 bits;  conditional E-value: 4
   TIGR01642  12 srerdrdkskeRsRkRsrdrsrdRdRdrrdrrrsrrkdsRdRdrrrydsrsissleeds...rrrSRdr.irrrsrsssseskerrrsrkrsss 101
                  ++ d+   +eR++k+++ ++++  Rd +dr+  r++  ++R+  ++d++  ++ ++d    +  +R   + +r+r+ ++  +e+r  r+rs+s
  MMETSP1137-20121227|3673_1  37 DQGNDHGEHRERHKKKKHKEHKEH-RDDKDRDSKRKRKHKEREDGEHDEKALDNADDDAagaE-GARGVeNGSRDRNIDQ-DREERPDRRRSPS 127
                 333344444455555444444433.44444444444444444444444444444444443331.2222202233333332.3344444444444 PP

  == domain 2    score: 34.8 bits;  conditional E-value: 1.4e-12
   TIGR01642   1 rDkekdrerEksrerdrdks...keRsRkRsrdrsrdRdRdrr........drrrsrrkdsRdRdrrrydsrsissleeds..rrrSRdrirrrsrsssseskerrrsrkrsss..nekkkddkkrslwdvkppkyeavtavqakasqvansvpgiaqkssltstekllaegskitdlpvlaveqqatrkaRrlyvgniPpe..akeeavvdFfndlllavgkdkaedgkavkaviinkdkkFaflEfrtveeatlalaldsiiyenvslkirRphdYiPvpeatpev 271
                 rD+  d++rE+  +r r  s    e +R+R rdr+r  d drr        drrrs  + s +R+   ++s  ++s    +     SRd  rr++r       +rr++r   ++   + ++ d  r  + ++ p      +   k+ q      g   k+  +  ++  ++    t ++++    qatrk Rrlyvgn+P +   +e+++++F++ +++  g+   e  ++v++v +  +  +af+Ef tve+a + l+l++i +   sl+i Rp++Y+P+  ++ e 
  MMETSP1137-20121227|3673_1 108 RDRNIDQDREERPDRRRSPSpssGEIDRRRGRDRDRRDDYDRRdrsldrdyDRRRSPPRRSLPRRSPPRRSPPRRSPPRRYdrGYDSRDF-RRDDRRHGDRFDDRRGGRPYDRRggYNDRRYDGGRRDYRRRSPSLSPSPPRRKKQAQED---DG---KPKRFWDGFQWVDTDVKTLVTQQGSVGQATRKDRRLYVGNLPLGagLTEKQLSEFISTSMRQRGMIAQEAPDPVLSVWLSPEGTYAFVEFHTVEHANNGLGLNGINLLTSSLRISRPNNYQPTVGVNIEG 388
                 688889999988888776432224444444444444333333311233446667776666666766666666666644444214568877.55555555566667766644433225667777777788888888888888877777777...45...7777888888899888888888888899**************752269*************9999888888***************************************************98777665 PP

  == domain 3    score: 52.1 bits;  conditional E-value: 7.7e-18
   TIGR01642 410 tkvvqLtnlvlaedllddeeYeeiledvkeeaskyGtlkniviPrpnkdrseteGvGKvFleyadvasaekAreelnGrkFekrvvvaafysedkyk 506
                 + v+   n++++++++d +e e + edv + +++yG+l  i+iP  n+ +        v+++++  a+a+ A ++l GrkF++rvv ++  +e ++ 
  MMETSP1137-20121227|3673_1 447 STVLACANMLTHDEMMDTQEHEGLKEDVMDGCKEYGKLEAIKIPITNNPN------CSVYIKFSTTAEAQTALKGLSGRKFDGRVVQVTSVPEAHFS 537
                 679999**************************************995443......359****************************9999999996 PP

>> TIGR01622  SF-CC1: splicing factor, CC1-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -6.8  19.3         4   4.1e+03      25     104 ..       8      86 ..       1     101 [. 0.42
   2 ?  -13.2  37.3         4   4.1e+03       2     106 ..     107     210 ..     103     212 .. 0.55
   3 ?   -3.3  18.2       0.7   7.2e+02      25     188 ..     193     368 ..     171     374 .. 0.53
   4 !   10.3   0.0   5.1e-05     0.053     212     308 ..     284     387 ..     271     412 .. 0.67
   5 !   44.9   0.0   1.7e-15   1.7e-12     389     495 ..     431     538 ..     398     542 .. 0.87

  Alignments for each domain:
  == domain 1    score: -6.8 bits;  conditional E-value: 4
   TIGR01622  25 ksrersRdrsrdRersr.skerdrdfdrrdrdrdkyrdrerrsrkrreserererekerrredevrrkrkeredrrerrek 104
                 + re  ++  + Re ++   + d + d  d+  d+   rer+++k+ ++++e++ +k  +r+ +++rk+kered  + ++ 
  MMETSP1137-20121227|3673_1   8 EAREPVKESASPREEKSaTAKDDGEVDADDQGNDHGEHRERHKKKKHKEHKEHRDDK--DRDSKRKRKHKEREDGEHDEKA 86 
                 444444444444444442222333444444444444444444444444444444444..3333444444444444443333 PP

  == domain 2    score: -13.2 bits;  conditional E-value: 4
   TIGR01622   2 krdrereRsRdssreadrdrerd.ksrersRdrsrdRersrskerdrdfdr.rdrdrdkyrdrerrsrkrresererereker.rredevrrkrkeredrrerrekee 106
                 +rdr+ + +R+ + +++r +  +  + +r R r+rdR+ + ++ rdr  dr  dr r+++r     +r+  +++ +r+   +r +r   + ++  +r+drr++++ ++
  MMETSP1137-20121227|3673_1 107 SRDRNIDQDREERPDRRRSPSPSsGEIDRRRGRDRDRRDDYDR-RDRSLDRdYDRRRSPPRR-SLPRRSPPRRSPPRRSPPRRyDR--GYDSRDFRRDDRRHGDRFDD 210
                 5677777777777666666554303446666666666666666.777666644444444442.22233333333344444444455..44555788999999988766 PP

  == domain 3    score: -3.3 bits;  conditional E-value: 0.7
   TIGR01622  25 ksrersRdrsrdRersrskerdrdfdrrdrdrdk.yrdrerrsrkrreser.ererekerrredevrrkrkeredrrerrek.eer..lkeelteeeRDartvfvlqlal..klreRdlkEFFskvgkvrdv..rlikDrnSr...rSkG.vaYvEFydvesvqlAlaltGqkllgv 188
                  sr+  Rd  r  +r  ++   r +drr  + d+ y + +r+ r+r++s   + +r k++ +ed  + kr  ++ +  ++   +     +  + ++ R +r  +v +l+l   l+e++l EF s+  + r +  +   D +        G  a+vEF +ve  +  l+l+G  ll  
  MMETSP1137-20121227|3673_1 193 DSRDFRRDDRRHGDRFDDRRGGRPYDRRGGYNDRrYDGGRRDYRRRSPSLSpSPPRRKKQAQEDDGKPKRFWDGFQW-VDTDvKTLvtQQGSVGQATRKDRRLYVGNLPLgaGLTEKQLSEFISTSMRQRGMiaQEAPDPVLSvwlSPEGtYAFVEFHTVEHANNGLGLNGINLLTS 368
                 12222222222223333444455566665555532444444444444443303334444455555554444444443.3333233321344678999*99*9***9998622579*********98766653113344443221212345259999999999999999999999876 PP

  == domain 4    score: 10.3 bits;  conditional E-value: 5.1e-05
   TIGR01622 212 dipnsiadlkLYvGnlh..fnitEqeLrqiFepF....Geiel......vqlqkDpetGrskGyGFiqFsdaeeakeAleklNGlelAGReikvglasDvteesdasla 308
                  ++++  d++LYvGnl     +tE++L +         G i +      + + + pe+     y F++F+  e+a + l  lNG++l    ++++  ++++++   +++
  MMETSP1137-20121227|3673_1 284 VGQATRKDRRLYVGNLPlgAGLTEKQLSEFISTSmrqrGMIAQeapdpvLSVWLSPEG----TYAFVEFHTVEHANNGL-GLNGINLLTSSLRISRPNNYQPTVGVNIE 387
                 445566799******9877899****99977654111133321111111233333444....6************9998.59*****9999999999988887766554 PP

  == domain 5    score: 44.9 bits;  conditional E-value: 1.7e-15
   TIGR01622 389 kalaeasfvpsevnlaseclvLsNmFdpateeeenfdkeikdDvkeEcskkggvvhi.yvdkknsaGkvYlkfdsveaalaavkalngRyFagklitAafvvkdvysk 495
                 +  a+a+ vp+   l+s+ l   Nm   ++  + +  + +k+Dv + c+ +g+   i +  ++n + +vY+kf+  ++a+ a+k+l gR F g++++ + v+++ +s 
  MMETSP1137-20121227|3673_1 431 AFGATAAGVPPAPPLTSTVLACANMLTHDEMMDTQEHEGLKEDVMDGCKEYGKLEAIkIPITNNPNCSVYIKFSTTAEAQTALKGLSGRKFDGRVVQVTSVPEAHFSA 538
                 45688899999999***************************************98772446899*************************************9988765 PP

>> TIGR01645  half-pint: poly-U binding splicing factor, half-pint family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -5.5   2.0       2.7   2.8e+03     454     472 ..      44      62 ..      14      91 .. 0.67
   2 !   13.2   0.0   5.7e-06    0.0059     509     592 ..     446     527 ..     443     538 .. 0.76

  Alignments for each domain:
  == domain 1    score: -5.5 bits;  conditional E-value: 2.7
   TIGR01645 454 lllenkkkkkekeeeelqp 472
                    e  kkkk ke++e   
  MMETSP1137-20121227|3673_1  44 EHRERHKKKKHKEHKEHRD 62 
                 5567788888888877554 PP

  == domain 2    score: 13.2 bits;  conditional E-value: 5.7e-06
   TIGR01645 509 esrvivlrnmvtPkdidet.....legeireecgkfgvvdrviiyqekqgeeedaeilvkifvefsasaevdrakealdGrffgGrkvv 592
                  s+v+   nm+t +++ +t     l++++ + c  +g ++ + i   ++           ++++fs++ae++ a + l Gr f Gr v+
  MMETSP1137-20121227|3673_1 446 TSTVLACANMLTHDEMMDTqehegLKEDVMDGCKEYGKLEAIKIPITNNP-------NCSVYIKFSTTAEAQTALKGLSGRKFDGRVVQ 527
                 58888888998877654331222288889999988887777766655555.......34699************************986 PP

>> TIGR00927  2A1904: K+-dependent Na+/Ca+ exchanger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2  19.4     0.011        11     871     980 ..       8     118 ..       1     130 [. 0.52

  Alignments for each domain:
  == domain 1    score: 1.2 bits;  conditional E-value: 0.011
   TIGR00927 871 egdedeteieaeeeaevkededeGeieaeedgevkGdegeeqkveaeeeeeedekdegeedeeeiaddeevk.detgeqel.naenqgeakedekGvdgeggsdGGdseeee 980
                 e+ e   e  + +e ++  ++d+Ge++a+++g+ +G++ e +k ++++e++e+ +d+++ d++++++++e + +e +e+ l na++++  +e+ +Gv+++      d + ee
  MMETSP1137-20121227|3673_1   8 EAREPVKESASPREEKSATAKDDGEVDADDQGNDHGEHRERHKKKKHKEHKEH-RDDKDRDSKRKRKHKEREdGEHDEKALdNADDDAAGAEGARGVENGSRDRNIDQDREE 118
                 22222333344455566678899999999999999998866555544444333.3333334433333333330333333332555555566666666665555444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (543 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       131  (0.0319356); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.55u 0.18s 00:00:00.73 Elapsed: 00:00:00.36
# Mc/sec: 1990.84
//
Query:       MMETSP1137-20121227|3674_1  [L=373]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (373 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        55  (0.0134081); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.14s 00:00:00.41 Elapsed: 00:00:00.32
# Mc/sec: 1538.50
//
Query:       MMETSP1137-20121227|3675_1  [L=395]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.022   10.4   0.0       0.03    9.9   0.0    1.1  1  TIGR03903 TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein


Domain annotation for each model (and alignments):
>> TIGR03903  TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.0   7.4e-06      0.03      88     143 ..     201     260 ..     180     276 .. 0.84

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 7.4e-06
   TIGR03903  88 vLDalaaahdaGvvhRDLkPqnimvsaadves....hakvLDFGigaLlpgvedadeatl 143
                  L ++a  h +G+vhR L    +++ + d+ s      k+ DFG +++++++++ ++a++
  MMETSP1137-20121227|3675_1 201 SLKGVAFLHGRGIVHRSLGGSSLLLNTYDHFSansvSVKLTDFGFASVGSQMDQEEVAKA 260
                 5789999*******************998754111157899*********9988666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (395 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        76  (0.0185275); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.31u 0.16s 00:00:00.47 Elapsed: 00:00:00.46
# Mc/sec: 1133.38
//
Query:       MMETSP1137-20121227|3676_1  [L=132]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (132 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        66  (0.0160897); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.14s 00:00:00.29 Elapsed: 00:00:00.36
# Mc/sec: 483.96
//
Query:       MMETSP1137-20121227|3679_1  [L=109]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (109 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        46  (0.011214); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.12s 00:00:00.27 Elapsed: 00:00:00.27
# Mc/sec: 532.84
//
Query:       MMETSP1137-20121227|3681_1  [L=154]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (154 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        62  (0.0151146); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.14s 00:00:00.31 Elapsed: 00:00:00.32
# Mc/sec: 635.20
//
Query:       MMETSP1137-20121227|3682_1  [L=324]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0027   14.6   0.0        0.7    6.7   0.0    2.3  2  TIGR01293 Kv_beta: voltage-dependent potassium channel beta subunit


Domain annotation for each model (and alignments):
>> TIGR01293  Kv_beta: voltage-dependent potassium channel beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.0   0.0   0.00028       1.1      72     167 ..      58     155 ..      31     172 .. 0.78
   2 !    6.7   0.0   0.00017       0.7     256     283 ..     208     233 ..     176     266 .. 0.75

  Alignments for each domain:
  == domain 1    score: 6.0 bits;  conditional E-value: 0.00028
   TIGR01293  72 wrrssyvittkifwggkaeeerglsrkhiieglkaslerlqleyvdivlan.........radpsspmeevvramtyvinqglalywgtsrwsaveimeaysvar 167
                   rss+ it+k++        r l  +  + +   sl rl+ +y+d  +++          ++p+    e  ra+  + ++gl    g + +s +e+ e    ar
  MMETSP1137-20121227|3682_1  58 VARSSLFITSKLH-------PRDLGEQSTLAAFPNSLRRLRTDYLDAFMLHyprcfsalcETEPEGGWRESWRALETLYDRGLVRAIGVCNFSPAELNELIGFAR 155
                 4566666666554.......57888888999999************99998222222222346666677888999999999999999999999999988777666 PP

  == domain 2    score: 6.7 bits;  conditional E-value: 0.00017
   TIGR01293 256 laalaeklgctlaqlaiawslrsegvss 283
                 la ++++lg ++aq+ + w+l+++ v s
  MMETSP1137-20121227|3682_1 208 LARISHELGRSVAQIVLRWALQHN-V-S 233
                 7889*****************996.3.3 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (324 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       110  (0.0268162); expected 82.0 (0.02)
Passed bias filter:                      102  (0.0248659); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.27u 0.19s 00:00:00.46 Elapsed: 00:00:00.43
# Mc/sec: 994.52
//
Query:       MMETSP1137-20121227|3683_1  [L=551]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00082   17.4   0.5    0.00082   17.4   0.4    2.6  3  TIGR03057 xxxLxxG_by_4: X-X-X-Leu-X-X-Gly heptad repeats


Domain annotation for each model (and alignments):
>> TIGR03057  xxxLxxG_by_4: X-X-X-Leu-X-X-Gly heptad repeats
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.1      0.65   2.6e+03      12      22 ..     209     219 ..     208     220 .. 0.70
   2 ?   -3.0   0.1      0.56   2.3e+03      20      25 ..     364     369 ..     363     370 .. 0.50
   3 !   17.4   0.4     2e-07   0.00082       5      27 ..     506     528 ..     504     529 .. 0.93

  Alignments for each domain:
  == domain 1    score: -3.2 bits;  conditional E-value: 0.65
   TIGR03057  12 asGagqLasGa 22 
                 asG++  ++G+
  MMETSP1137-20121227|3683_1 209 ASGVPGVQNGS 219
                 67888777776 PP

  == domain 2    score: -3.0 bits;  conditional E-value: 0.56
   TIGR03057  20 sGanqL 25 
                 +G++q+
  MMETSP1137-20121227|3683_1 364 AGVGQA 369
                 456554 PP

  == domain 3    score: 17.4 bits;  conditional E-value: 2e-07
   TIGR03057   5 adGagqLasGagqLasGanqLad 27 
                 +dGa +L++Ga +L++ a++L+d
  MMETSP1137-20121227|3683_1 506 NDGADTLSDGADTLNDRADTLND 528
                 89*******************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (551 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        58  (0.0141394); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.14s 00:00:00.49 Elapsed: 00:00:00.43
# Mc/sec: 1691.30
//
Query:       MMETSP1137-20121227|3684_1  [L=171]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.013   11.8   0.1      0.013   11.8   0.1    1.1  1  TIGR03955 rSAM_HydG: [FeFe] hydrogenase H-cluster radical SAM maturase HydG
       0.29    9.6   3.1        0.5    8.8   2.1    1.6  1  TIGR01195 oadG_fam: sodium pump decarboxylases, gamma subunit


Domain annotation for each model (and alignments):
>> TIGR03955  rSAM_HydG: [FeFe] hydrogenase H-cluster radical SAM maturase HydG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.1   6.2e-06     0.013     346     410 ..     103     167 ..      44     170 .. 0.84

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 6.2e-06
   TIGR03955 346 gyaeeeeeeesaqfdvsdertldevvkwllelgyipsfctacyregrtgdrfmslvksgqiancc 410
                 g +e+ + e  +q + s + +++++v ++ e+ y p  ct c+     gd +  l  +++ ++ c
  MMETSP1137-20121227|3684_1 103 GSMERADVEMNEQQERSVQAAIQQLVCYVAEEPYEPCECTLCFESMAVGDTIKVLSCCHKFHQKC 167
                 55566666788999************************************998888777776666 PP

>> TIGR01195  oadG_fam: sodium pump decarboxylases, gamma subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   2.1   0.00025       0.5       8      34 ..      47      75 ..      43     126 .. 0.78

  Alignments for each domain:
  == domain 1    score: 8.8 bits;  conditional E-value: 0.00025
   TIGR01195  8 itltvlGmgiVflvLllLi..yvvrgmgk 34
                + ++ +Gmgi ++ L+lL   y++r+ ++
  MMETSP1137-20121227|3684_1 47 AIIMLMGMGIPLVCLVLLSvrYAMRCYAR 75
                34566888888888888752367777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (171 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        94  (0.0229157); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.18u 0.16s 00:00:00.34 Elapsed: 00:00:00.30
# Mc/sec: 752.34
//
Query:       MMETSP1137-20121227|3685_1  [L=125]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (125 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        46  (0.011214); expected 82.0 (0.02)
Passed bias filter:                       44  (0.0107265); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.16s 00:00:00.31 Elapsed: 00:00:00.77
# Mc/sec: 214.27
//
Query:       MMETSP1137-20121227|3686_1  [L=455]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (455 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        75  (0.0182838); expected 82.0 (0.02)
Passed bias filter:                       35  (0.00853242); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.14s 00:00:00.43 Elapsed: 00:00:00.42
# Mc/sec: 1429.88
//
Query:       MMETSP1137-20121227|3687_1  [L=108]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.9e-06   24.1   0.1      2e-06   24.0   0.1    1.0  1  TIGR02956 TMAO_torS: TMAO reductase sytem sensor TorS
     0.0059   13.5   0.0     0.0067   13.3   0.0    1.1  1  TIGR02966 phoR_proteo: phosphate regulon sensor kinase PhoR


Domain annotation for each model (and alignments):
>> TIGR02956  TMAO_torS: TMAO reductase sytem sensor TorS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.0   0.1   9.9e-10     2e-06     519     606 ..      13     106 ..       3     108 .] 0.79

  Alignments for each domain:
  == domain 1    score: 24.0 bits;  conditional E-value: 9.9e-10
   TIGR02956 519 iLDySkiEaG.hlsiserafdlskLledvlhlmesraqekgiqLsleide.....dlpevlqgDlsrirQvliNlvgNaiKFTdrGsvvlrvsl 606
                   D+S +E G +l   + +f++ +Ll++v+ + +   ++ ++  +  i+      ++ e l  D + +  +l+Nl +Na+K T +G v ++  l
  MMETSP1137-20121227|3687_1  13 AVDWSLLESGeQLVPTPAEFNVAALLKKVVWIAKDTGRSGNVVVKHRISTslqvhSVSEKLYSDANWLMMILVNLASNAMKHTLEGIVLISAXL 106
                 68********88999*****************9977666665555544431111155677889*************************998765 PP

>> TIGR02966  phoR_proteo: phosphate regulon sensor kinase PhoR
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   0.0   3.3e-06    0.0067     187     248 ..      30      98 ..      11     105 .. 0.63

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 3.3e-06
   TIGR02966 187 ekvdvaelleelkkeaealseeke....hqielev...daavkvkgdeeeLrsalsNLveNAikytpeg 248
                  +++va+ll+++   a+ + ++ +    h+i++++   + + k+ +d + L+ +l NL +NA+k+t eg
  MMETSP1137-20121227|3687_1  30 AEFNVAALLKKVVWIAKDTGRSGNvvvkHRISTSLqvhSVSEKLYSDANWLMMILVNLASNAMKHTLEG 98 
                 567777777777666655555444000044444432123344566777778889************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (108 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        92  (0.0224281); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.16u 0.15s 00:00:00.31 Elapsed: 00:00:00.30
# Mc/sec: 475.16
//
Query:       MMETSP1137-20121227|3688_1  [L=129]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (129 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       343  (0.0836177); expected 82.0 (0.02)
Passed bias filter:                      251  (0.0611897); expected 82.0 (0.02)
Passed Vit filter:                        19  (0.00463189); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.17s 00:00:00.34 Elapsed: 00:00:00.36
# Mc/sec: 472.96
//
Query:       MMETSP1137-20121227|3689_1  [L=196]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.8e-20   68.0   0.0    9.5e-20   67.9   0.0    1.0  1  TIGR03903 TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
      9e-06   23.1   0.1    1.2e-05   22.7   0.1    1.2  1  TIGR03724 arch_bud32: Kae1-associated kinase Bud32


Domain annotation for each model (and alignments):
>> TIGR03903  TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.9   0.0   4.6e-23   9.5e-20      57     230 ..       2     169 ..       1     188 [. 0.83

  Alignments for each domain:
  == domain 1    score: 67.9 bits;  conditional E-value: 4.6e-23
   TIGR03903  57 vFeyveGrtlrevL...aadGaLpaaetg.rLmlqvLDalaaahdaGvvhRDLkPqnimvsaadveshakvLDFGigaLlpgvedadeatltrttevlGsPaYaaPeqLRgepvtaksDlYaWGLivle.CLtGkrvvqGasvaevlykqLsPvdvslPsaiaghpLgevLRkalnkdv 230
                 v ey     l +vL   + +G   +++t+ r +lq L +l   h++ vvhRD+kP+ni +  +d   + k+ DFG++ Ll+++++        +t v+GsP Y  Pe   gep   k+D+++ G+ + e CL  ++  +  s a ++ k +  ++  lP+   +  L+  L +   + +
  MMETSP1137-20121227|3689_1   2 VMEYASNGSLHDVLcqrQKKGNHLSEDTVwRYILQLLIGLHEIHARNVVHRDIKPHNIFLGEND---TVKIGDFGVSRLLSNARE-------MATTVVGSPGYLPPELCNGEPYNEKADIWSLGVTLAElCLLKHPYGDATSQAALILKIMEAKPPRLPEL-YSAELSRTLASCFSRVP 169
                 67777777788887444456765555555499***************************97766...679***************.......56779******************************999*****99999999999999999999999975.45567766666665544 PP

>> TIGR03724  arch_bud32: Kae1-associated kinase Bud32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.7   0.1     6e-09   1.2e-05      75     148 ..       2      87 ..       1      90 [. 0.73

  Alignments for each domain:
  == domain 1    score: 22.7 bits;  conditional E-value: 6e-09
   TIGR03724  75 vmeyiegkklkdlleekel...........ellkevGelvgklHkagivhgDlttsNiiv.kddklyliDfGLgkkskevedkavD 148
                 vmey ++  l+d+l ++++           +++ ++   + ++H  ++vh D+ ++Ni + ++d++ + DfG ++  ++++++a+ 
  MMETSP1137-20121227|3689_1   2 VMEYASNGSLHDVLCQRQKkgnhlsedtvwRYILQLLIGLHEIHARNVVHRDIKPHNIFLgENDTVKIGDFGVSRLLSNAREMATT 87 
                 677777777777776655556666666444455555555678999***************446666677******99999999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (196 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        60  (0.014627); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.21u 0.14s 00:00:00.35 Elapsed: 00:00:00.43
# Mc/sec: 601.62
//
Query:       MMETSP1137-20121227|3690_1  [L=135]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (135 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        49  (0.0119454); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.18s 00:00:00.34 Elapsed: 00:00:00.32
# Mc/sec: 556.83
//
Query:       MMETSP1137-20121227|3692_1  [L=387]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (387 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       121  (0.0294978); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.17s 00:00:00.45 Elapsed: 00:00:00.34
# Mc/sec: 1502.35
//
Query:       MMETSP1137-20121227|3693_1  [L=284]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (284 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       110  (0.0268162); expected 82.0 (0.02)
Passed bias filter:                       99  (0.0241346); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.13s 00:00:00.36 Elapsed: 00:00:00.36
# Mc/sec: 1041.25
//
Query:       MMETSP1137-20121227|3694_1  [L=114]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (114 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        21  (0.00511945); expected 82.0 (0.02)
Passed bias filter:                       21  (0.00511945); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.15s 00:00:00.28 Elapsed: 00:00:00.32
# Mc/sec: 470.21
//
Query:       MMETSP1137-20121227|3695_1  [L=166]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (166 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        70  (0.0170648); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.15s 00:00:00.32 Elapsed: 00:00:00.41
# Mc/sec: 534.39
//
Query:       MMETSP1137-20121227|3696_1  [L=163]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0017   16.0   0.7     0.0026   15.4   0.0    1.6  2  TIGR01071 rplO_bact: ribosomal protein L15


Domain annotation for each model (and alignments):
>> TIGR01071  rplO_bact: ribosomal protein L15
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.5      0.19   7.6e+02      13      24 ..      40      51 ..      12      58 .. 0.60
   2 !   15.4   0.0   6.4e-07    0.0026      69     142 ..      81     158 ..      66     160 .. 0.73

  Alignments for each domain:
  == domain 1    score: -2.3 bits;  conditional E-value: 0.19
   TIGR01071 13 kkkkrvgRGigs 24
                ++k+  gRG++ 
  MMETSP1137-20121227|3696_1 40 HRKHPGGRGNAG 51
                333333444444 PP

  == domain 2    score: 15.4 bits;  conditional E-value: 6.4e-07
   TIGR01071  69 lkkelevvnvekleklfkdgevvtlekLl..ekklikkknkl.vKvlgkgkl.ekkltvkaekvsksakakiekaggs 142
                 +k  + ++n+e+l +l ++++   +++ +  ++ +i+   +   Kvlgkg+l +++++vka+ +sk a++ki+++gg 
  MMETSP1137-20121227|3696_1  81 NKFACPTINLERLWSLVSEQTRTRYADNKdgKAPVINCVRSGiFKVLGKGELpDQPVVVKAKFFSKLAEKKIKAVGGA 158
                 55566678888888888777555554444114556777666668*******63899*******************995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (163 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        87  (0.0212092); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.20u 0.16s 00:00:00.36 Elapsed: 00:00:00.46
# Mc/sec: 467.70
//
Query:       MMETSP1137-20121227|3697_1  [L=1008]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1008 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       113  (0.0275475); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.60u 0.14s 00:00:00.74 Elapsed: 00:00:00.76
# Mc/sec: 1750.59
//
Query:       MMETSP1137-20121227|3698_1  [L=367]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.3e-90  300.9   2.8    4.7e-90  300.4   1.9    1.2  1  TIGR02037 degP_htrA_DO: peptidase Do
    2.6e-64  215.4   3.9    3.3e-64  215.0   2.7    1.1  1  TIGR02038 protease_degS: periplasmic serine peptidase DegS
      1e-06   25.7   0.0    2.2e-06   24.6   0.0    1.4  2  TIGR00054 TIGR00054: RIP metalloprotease RseP
    6.4e-06   23.2   0.1     0.0001   19.2   0.0    2.3  2  TIGR02860 spore_IV_B: stage IV sporulation protein B
    0.00096   15.0   0.1     0.0014   14.5   0.1    1.1  1  TIGR03900 prc_long_Delta: putative carboxyl-terminal-processing protease, deltaproteobacterial
  ------ inclusion threshold ------
      0.012   12.5   0.1      0.031   11.1   0.0    1.7  2  TIGR00225 prc: C-terminal processing peptidase


Domain annotation for each model (and alignments):
>> TIGR02037  degP_htrA_DO: peptidase Do
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  300.4   1.9   6.9e-93   4.7e-90       7     337 ..       2     329 ..       1     362 [. 0.87

  Alignments for each domain:
  == domain 1    score: 300.4 bits;  conditional E-value: 6.9e-93
   TIGR02037   7 vekvapavVnisteeevkkreksselpeffeeffgdelpeaqaqqeeeeekveslGSGviisadgyvlTNnHvvdgakeikvklsdgrefkaklvgkDektDiAvlkieak.kklpvvklgdsdklrvGdlvlAiGnPfglgetVtaGivSAlgrs..glnked.yeeFIQtDaaiNpGNSGGpLvnlkGeviGiNtaIlsksGgsvGigFAiPinlvkkvveqllkkgkvkrglLGvk..........iqevtkdlakslglekakGalvaevlkgspAekaGlkaGDvilkvngkkiksaadlreaigtlkpgkkvklkilRkgkekeikvtlkeaeeekass 337
                 v++v pavV i+te+ v+++         +e +++  l+       e ++k+ + GSGvi+s++g+++TN+Hvv++a +++v+l+dgr f++++ g+D+  D+A +ki+ + k lp++ lg sd+l+vGd+v+AiGn  gl++tVt GivS l+rs  ++++ +   +FIQtDaaiNpGNSGGpL+n  GeviGiNtaI +   +++GigFAiPi++++k + +l  + ++ +++LG +            + ++d ++ + l ++ Galv +v+++ pA+kaGl++ D++++++gk +++aad ++ +  +++gk++++k++R+gk++ ++v+ ++ ++ ++++
  MMETSP1137-20121227|3698_1   2 VDAVGPAVVRIDTERLVDRAP--------LEGYLFPGLE------PEGQRKEAGQGSGVILSQEGLIMTNSHVVKNAAKVTVTLTDGRIFEGTVTGSDDYMDLAAVKIKPSgKPLPTAPLGRSDELQVGDWVIAIGNAVGLDSTVTLGIVSSLSRSaaEVGIPNkKVNFIQTDAAINPGNSGGPLLNEFGEVIGINTAIRA---NAAGIGFAIPIDTASKAMRELAVGRRIAHAYLGWAsrcraxtpdaAAQNNADPNSNVVLPESYGALVLAVAPETPAAKAGLRKFDLLVELDGKIVRNAADAQKIVDGASVGKSLTVKLVRQGKTVALSVVTGDLNDXRKRK 329
                 567888888888888887652........4445443333......23567899********************************************************99999******************************************54444443589********************************99...899******************************98664444433333444555566778889*******************************************************************999665555544 PP

>> TIGR02038  protease_degS: periplasmic serine peptidase DegS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  215.0   2.7   4.9e-67   3.3e-64      76     347 ..      39     320 ..       2     323 .. 0.86

  Alignments for each domain:
  == domain 1    score: 215.0 bits;  conditional E-value: 4.9e-67
   TIGR02038  76 iqglGsGvimskeGyiltnkhvikkadqivvalqdGrvfeaelvGsdsltdlavlkieadn..lptiPlnadrkpkvGdvvlaiGnPynlGqtitqGiisatGrngls...svGrqnflqtdaainaGnsGGalvnsaGelvGintlsfqkaadeeaeGinfaiPiklaskileklirdGrvirGylGvdge..dinslsaqllg........ledlrgivvtevdPngPaaragllvrdvilkldnkevisaeelmdrvaelrPgskvlvtvlrkgkqlelpvvie 347
                   g GsGvi+s+eG i+tn hv+k+a ++ v+l dGr+fe ++ Gsd+  dla +ki+  +  lpt Pl  + + +vGd v+aiGn   l  t+t Gi+s+  r++ +   ++ + nf+qtdaain GnsGG l+n  Ge++Gint+        +a Gi+faiPi+ ask ++ l    r+   ylG  ++    ++ +a   +        l++  g +v+ v P++Paa+agl++ d++++ld+k v  a +  ++v     g+ ++v ++r+gk++ l vv +
  MMETSP1137-20121227|3698_1  39 EAGQGSGVILSQEGLIMTNSHVVKNAAKVTVTLTDGRIFEGTVTGSDDYMDLAAVKIKPSGkpLPTAPLGRSDELQVGDWVIAIGNAVGLDSTVTLGIVSSLSRSAAEvgiPNKKVNFIQTDAAINPGNSGGPLLNEFGEVIGINTAIR-----ANAAGIGFAIPIDTASKAMRELAVGRRIAHAYLGWASRcrAXTPDAAAQNNadpnsnvvLPESYGALVLAVAPETPAAKAGLRKFDLLVELDGKIVRNAADAQKIVDGASVGKSLTVKLVRQGKTVALSVVTG 320
                 5678*****************************************************987777*****************************************998522356799******************************853.....4578********************99********998632222322222221111111145668999**************************************************************9975 PP

>> TIGR00054  TIGR00054: RIP metalloprotease RseP
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0       1.1   7.5e+02     216     284 ..      38     100 ..      15     107 .. 0.58
   2 !   24.6   0.0   3.2e-09   2.2e-06     205     271 ..     254     321 ..     243     334 .. 0.86

  Alignments for each domain:
  == domain 1    score: -3.5 bits;  conditional E-value: 1.1
   TIGR00054 216 ekaGlkeGDkilkidgeklkswrdlvklvkenpeksleikveRngetlslklvpeakgk.ig.vglspklk 284
                 ++aG   G  il+ +g ++++ +    +vk+    ++ + +  +g++++ +++  ++   +  v ++p+ k
  MMETSP1137-20121227|3698_1  38 KEAGQGSG-VILSQEGLIMTNSH----VVKN--AAKVTVTL-TDGRIFEGTVTGSDDYMdLAaVKIKPSGK 100
                 55554444.46666667666653....4444..33333333.36777777777666322233466666655 PP

  == domain 2    score: 24.6 bits;  conditional E-value: 3.2e-09
   TIGR00054 205 vlsdvvdnspaekaGlkeGDkilkidgeklkswrdlvklvken.peksleikveRngetlslklvpea 271
                  +  v +  pa+kaGl++ D +++ dg+++++  d  k+v     +ksl +k+ R+g+t+ l++v  +
  MMETSP1137-20121227|3698_1 254 LVLAVAPETPAAKAGLRKFDLLVELDGKIVRNAADAQKIVDGAsVGKSLTVKLVRQGKTVALSVVTGD 321
                 56789999********************************965169*****************99877 PP

>> TIGR02860  spore_IV_B: stage IV sporulation protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.0     0.048        33     357     393 ..     163     200 ..     148     206 .. 0.86
   2 !   19.2   0.0   1.5e-07    0.0001     124     178 ..     262     317 ..     257     336 .. 0.88

  Alignments for each domain:
  == domain 1    score: 1.1 bits;  conditional E-value: 0.048
   TIGR02860 357 ivqGmsGsPiiqn.gkviGavtHvfvndptkGYgvyie 393
                 i  G sG P++++ g viG  t +  n +  G+++ i+
  MMETSP1137-20121227|3698_1 163 INPGNSGGPLLNEfGEVIGINTAIRANAAGIGFAIPID 200
                 66799*****998799*************999999886 PP

  == domain 2    score: 19.2 bits;  conditional E-value: 1.5e-07
   TIGR02860 124 sPaeeagiqvGDlilkvngekikeeedvaklineag.geklkltikRkkkkiekkl 178
                 +Pa++ag++  Dl+++++g+ ++++ d +k+++ a+ g++l++++ R++k++  ++
  MMETSP1137-20121227|3698_1 262 TPAAKAGLRKFDLLVELDGKIVRNAADAQKIVDGASvGKSLTVKLVRQGKTVALSV 317
                 7*********************************999*************998666 PP

>> TIGR03900  prc_long_Delta: putative carboxyl-terminal-processing protease, deltaproteobacterial
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.1     2e-06    0.0014     154     213 ..     254     312 ..     249     320 .. 0.86

  Alignments for each domain:
  == domain 1    score: 14.5 bits;  conditional E-value: 2e-06
   TIGR03900 154 tVlrvlpetPAaraGlkakDrivkideestvnmdlndavdrlRGp.vdtkvtitvrReGld 213
                 +Vl v petPAa+aGl++ D +v++d +   n   +da++ + G+ v+  +t+++ R+G+ 
  MMETSP1137-20121227|3698_1 254 LVLAVAPETPAAKAGLRKFDLLVELDGKIVRN--AADAQKIVDGAsVGKSLTVKLVRQGKT 312
                 699***********************998877..689999999963788899999999954 PP

>> TIGR00225  prc: C-terminal processing peptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0       1.1   7.5e+02      69      92 ..     101     125 ..      99     135 .. 0.81
   2 ?   11.1   0.0   4.6e-05     0.031      65     129 ..     254     317 ..     240     339 .. 0.83

  Alignments for each domain:
  == domain 1    score: -3.3 bits;  conditional E-value: 1.1
   TIGR00225  69 plegsPAekag.ikpgDkIikvdgk 92 
                 pl  +P  ++  +++gD +i+++++
  MMETSP1137-20121227|3698_1 101 PLPTAPLGRSDeLQVGDWVIAIGNA 125
                 6778888899889*********986 PP

  == domain 2    score: 11.1 bits;  conditional E-value: 4.6e-05
   TIGR00225  65 vivsplegsPAekagikpgDkIikvdgksvagmelddavelirGkk.gtkvkleieragkkktlel 129
                 ++ ++  ++PA+kag++  D ++++dgk v      da + + G   g ++ +++ r+gk+ +l++
  MMETSP1137-20121227|3698_1 254 LVLAVAPETPAAKAGLRKFDLLVELDGKIVRN--AADAQKIVDGASvGKSLTVKLVRQGKTVALSV 317
                 5788999*********************8764..45777777776437778888888888777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (367 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       118  (0.0287665); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.32u 0.16s 00:00:00.48 Elapsed: 00:00:00.47
# Mc/sec: 1030.64
//
Query:       MMETSP1137-20121227|3699_1  [L=225]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (225 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       161  (0.0392491); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.18s 00:00:00.39 Elapsed: 00:00:00.35
# Mc/sec: 848.50
//
Query:       MMETSP1137-20121227|3700_1  [L=530]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0024   14.8   0.0     0.0024   14.8   0.0    3.3  3  TIGR01622 SF-CC1: splicing factor, CC1-like family


Domain annotation for each model (and alignments):
>> TIGR01622  SF-CC1: splicing factor, CC1-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   5.8e-07    0.0024     403     473 ..      41     129 ..      31     133 .. 0.79
   2 ?  -18.8  49.6         1   4.1e+03       7     117 ..     302     413 ..     291     419 .. 0.41
   3 ?   -6.6  12.8         1   4.1e+03      18      51 ..     382     415 ..     372     472 .. 0.37

  Alignments for each domain:
  == domain 1    score: 14.8 bits;  conditional E-value: 5.8e-07
   TIGR01622 403 laseclvLsNmFdp.............ateee.enfdkeikdDvkeEcskkggvvhiyv....dkknsaGkvYlkfdsveaalaavkal 473
                 + s+ ++L+Nm+ p             + e++ +++++e  +D+ eE  + gg  +       +++  aG+vY kf + e+a++a++ l
  MMETSP1137-20121227|3700_1  41 ILSQTILLQNMYLPppqqyddngmpvpQDEDDlQDHFEEFYEDIFEELTNIGGELEQLRvcenLSDHLAGNVYAKFREEEDAEKALQKL 129
                 56889999999988889888888888754544389*************999998776541111334579****************9987 PP

  == domain 2    score: -18.8 bits;  conditional E-value: 1
   TIGR01622   7 reRsRdssreadrdrerdksrersRdr.srdRersr.skerdrdfdrrdrdrdkyrdrerrsrkrreserererekerrredevrrkrkeredrrerrek..eerlkeelteeeR 117
                 reR+   ++e++r r +d++r+r Rd  +rdR+r r + +rdr  + r rdr    +re  + +r ++    +  +   r+de+     er+  rer +   +er    +t eeR
  MMETSP1137-20121227|3700_1 302 REREEREREERRRRRGSDRDRDRRRDDdDRDRDRRRdDDDRDRGGRDRGRDRGGEGGRESSQERRAKIAAWNKAREGGGRGDERX---XERGXSRERGNSreRERGSSRETSEER 413
                 3333333334555555555555555421345555553445555433333444444444443333333332222222223444444...233333333222112233333333333 PP

  == domain 3    score: -6.6 bits;  conditional E-value: 1
   TIGR01622  18 drdrerdksrersRdrsrdRersrskerdrdfdr 51 
                  ++r  +++  r+R  sr+Rer++s+e   + + 
  MMETSP1137-20121227|3700_1 382 GDERXXERGXSRERGNSRERERGSSRETSEERRA 415
                 3344444444444444444444443332221111 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (530 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       162  (0.0394929); expected 82.0 (0.02)
Passed bias filter:                       98  (0.0238908); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.16s 00:00:00.63 Elapsed: 00:00:00.61
# Mc/sec: 1146.79
//
Query:       MMETSP1137-20121227|3702_1  [L=436]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   4.9e-102  339.3   0.0   5.7e-102  339.1   0.0    1.0  1  TIGR01296 asd_B: aspartate-semialdehyde dehydrogenase
    2.1e-42  143.2   0.2    2.3e-30  103.6   0.0    3.3  2  TIGR00978 asd_EA: aspartate-semialdehyde dehydrogenase
    7.9e-31  105.1   0.0    2.5e-15   54.1   0.0    2.1  2  TIGR01745 asd_gamma: aspartate-semialdehyde dehydrogenase
    6.4e-16   56.3   0.1    5.2e-14   50.0   0.1    2.2  1  TIGR01850 argC: N-acetyl-gamma-glutamyl-phosphate reductase
    3.9e-06   24.2   0.0    5.5e-06   23.7   0.0    1.3  1  TIGR01851 argC_other: N-acetyl-gamma-glutamyl-phosphate reductase
    0.00019   18.6   0.0     0.0005   17.2   0.0    1.6  2  TIGR01534 GAPDH-I: glyceraldehyde-3-phosphate dehydrogenase, type I
  ------ inclusion threshold ------
       0.02   11.6   0.1      0.029   11.1   0.1    1.2  1  TIGR03466 HpnA: hopanoid-associated sugar epimerase


Domain annotation for each model (and alignments):
>> TIGR01296  asd_B: aspartate-semialdehyde dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  339.1   0.0  9.6e-105  5.7e-102       1     336 [.     106     435 ..     106     436 .] 0.97

  Alignments for each domain:
  == domain 1    score: 339.1 bits;  conditional E-value: 9.6e-105
   TIGR01296   1 nvaivGatGavGqellkvLeernfpidklvllasersaGkkvkfkgkeleveeaekesfegidialfsaGgsvskefapkaak.agviviDntsafrldedvPLvvpevnaeelkeakkkgiianPnCstiqlvvvLkplkdeaklkrvvvstYqavsGaGkkgveeLknqtkavlegkekepeidalkakkfakqiafnaiplidklkedGytkeelkllfetrkilgiedlkvsatcvrvPvftghsesvsiefekelsveevkelLkeapgvvviddpsenlyptPleavgkdevfvgrirk.DlskekglalfvvaDnlrkGaalnavqiaell 336
                 +v++vG tGavG+e+++vL +r fp+++l+l+as+rsaG+k+      l +ee + e  ++ d+ + +  g  + e+a k+++ +g +viDn+safr d+ vPL+vpe+na+  ++ k + +ianPnC+t  ++++L pl++ +++kr + stYqa sGaG+ g+ eL +  ka+ +g   e        k fa+ + fn+ip+idk+ +d ytkee k+++etrki++ +dl+vs tcvr+P +++h+e+++ie+e+++++  +   L  apgv+++dd  +n+yp+Pl+a+ k +v vgr+rk D++ + gl+lfv + +l++Gaalnav iae++
  MMETSP1137-20121227|3702_1 106 KVGVVGVTGAVGKEIVQVLGDRGFPMSQLRLFASARSAGQKMDSSLGALAIEEFTLEAARECDVVFLAVSGDFALEWAEKISEnDGPLVIDNSSAFRYDPSVPLIVPEINADAARKSK-RRLIANPNCTTAIALMALAPLHKLFGIKRCIXSTYQAASGAGAPGMSELXEGXKAISNGGKAE-------NKVFAHVLPFNVIPHIDKFLDDQYTKEERKVTWETRKIMDLPDLPVSCTCVRIPTLRAHAEAITIETERPVDIAAAFAALXAAPGVALMDDTANNVYPMPLTATSKYDVEVGRVRKnDVFGDXGLDLFVCGXQLLRGAALNAVLIAEAV 435
                 599*****************************************************************************9862689***********************99988887.99******************************************************9998877.......489****************************************************************************************************************8469***************************975 PP

>> TIGR00978  asd_EA: aspartate-semialdehyde dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  103.6   0.0   3.9e-33   2.3e-30       1     191 [.     105     276 ..     105     293 .. 0.81
   2 !   35.5   0.0     2e-12   1.2e-09     189     339 ..     294     434 ..     276     436 .] 0.76

  Alignments for each domain:
  == domain 1    score: 103.6 bits;  conditional E-value: 3.9e-33
   TIGR00978   1 vkvavLGatGlvGqklvkllekhp.yfelakvvaserkaGkkygevvkwilsgdipeevrdleiketepaaeekdvdlvfsalpsevaeevEkkla.eeGlevfsnasalRldpdvplivpEvnsdhlellkvqkergwkGvivtnpnCstailtlalkPlidaasikkvivatlqavsGAGypGvssldild 191
                 +kv+v+G+tG vG+++v++l      +   ++ as r+aG+k    +              l i+e   +a +++ d+vf a++ + a e  +k+  ++G  v+ n+sa+R+dp+vplivpE+n+d        k+      +++npnC+tai  +al+Pl + ++ik+ i +t qa+sGAG pG+s l    
  MMETSP1137-20121227|3702_1 105 IKVGVVGVTGAVGKEIVQVLGDRGfPMSQLRLFASARSAGQKMDSSL------------GALAIEEFTLEA-ARECDVVFLAVSGDFALEWAEKISeNDGPLVIDNSSAFRYDPSVPLIVPEINADAARKS---KR-----RLIANPNCTTAIALMALAPLHKLFGIKRCIXSTYQAASGAGAPGMSELXEGX 276
                 79******************764323455589*********977666............345555555333.3579************8876666516799************************975433...33.....49*******************************************9986555 PP

  == domain 2    score: 35.5 bits;  conditional E-value: 2e-12
   TIGR00978 189 ildnviPyikg.EEekiekEtkkilGkleegkvepaelevsatttRvPvleGHtesvfveldkkldieeirealkefkklpqklglpsaPekpivlldeedrPqprldldaekgmavtvGrlreese....slklvvlghnlvRGAAGaallnaEl 339
                 +  nviP+i++  +++  kE +k+  + ++  +   +l vs t+ R+P+l  H e++ +e+++ +di  + +al    +      +  +         ++  P p   l+a +   v+vGr+r+++      l+l v g  l+RGAA  a+l aE 
  MMETSP1137-20121227|3702_1 294 LPFNVIPHIDKfLDDQYTKEERKVTWETRK-IMDLPDLPVSCTCVRIPTLRAHAEAITIETERPVDIAAAFAALXAAPGV---ALMDDT--------ANNVYPMP---LTATSKYDVEVGRVRKNDVfgdxGLDLFVCGXQLLRGAALNAVLIAEA 434
                 556******983467788888888877766.4445589*************************99987766666555554...222222........23334655...45566889********98777789********************9997 PP

>> TIGR01745  asd_gamma: aspartate-semialdehyde dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.5   0.0   1.1e-16   6.5e-14       2     180 ..     106     278 ..     105     288 .. 0.83
   2 !   54.1   0.0   4.3e-18   2.5e-15     214     355 ..     287     425 ..     276     431 .. 0.83

  Alignments for each domain:
  == domain 1    score: 49.5 bits;  conditional E-value: 1.1e-16
   TIGR01745   2 kvglvgwrgmvgsvllkrmqeekdfdaikp.vffstsqlgqkapslakisailedaydidalkeldiiitcqggdytkeiypklrkagwkgywidaasslrmkddaviildpvnldvikdavnkgirtfv.ggnctvslllmslgglfrdelvewvsvatyqaasgggarhmrellkqmgv 180
                 kvg+vg  g vg  +++ +  ++ f + +  +f s+  +gqk  s  +  a   + + ++a +e+d++     gd++ e   k+ ++      id +s++r +    +i+  +n d    a  k  r ++   nct+++ lm+l  l +   ++    +tyqaasg+ga  m el ++   
  MMETSP1137-20121227|3702_1 106 KVGVVGVTGAVGKEIVQVL-GDRGFPMSQLrLFASARSAGQKMDSSLG--ALAIEEFTLEAARECDVVFLAVSGDFALEWAEKISENDG-PLVIDNSSAFRYDPSVPLIVPEINAD----AARKSKRRLIaNPNCTTAIALMALAPLHKLFGIKRCIXSTYQAASGAGAPGMSELXEGXKA 278
                 79************99976.5678877765166677889998876444..4445789**************************999864.578********988877888777765....5555566555147*****************99***********************987655 PP

  == domain 2    score: 54.1 bits;  conditional E-value: 4.3e-18
   TIGR01745 214 venfsvplagslipwidkqldngqsreewkgqaetnkilgtkdtilvdglcvrigalrchsqaltiklkkdvsleeieeiirahnkwvkvvpnereitlrelt..paavtgtldipvgrlrklnm.gkeylsaftvgdqllwgaa 355
                  + f+  l  ++ip idk ld+  ++ee k   et ki++  d ++v  +cvri +lr h+ a+ti   + v +      + a  + v ++    ++t +++   p + t   d+ vgr+rk ++ g+  l  f+ g qll gaa
  MMETSP1137-20121227|3702_1 287 NKVFAHVLPFNVIPHIDKFLDDQYTKEERKVTWETRKIMDLPD-LPVSCTCVRIPTLRAHAEAITIETERPVDIAAAFAALXAA-PGVALM----DDTANNVYpmPLTATSKYDVEVGRVRKNDVfGDXGLDLFVCGXQLLRGAA 425
                 56788889999****************************9987.7***************************999888877664.556655....4455555500555567789********98549999**************8 PP

>> TIGR01850  argC: N-acetyl-gamma-glutamyl-phosphate reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.0   0.1   8.8e-17   5.2e-14       1     185 [.     105     266 ..     105     275 .. 0.82

  Alignments for each domain:
  == domain 1    score: 50.0 bits;  conditional E-value: 8.8e-17
   TIGR01850   1 ikvaivGasGYtGaeLlrll..akHpevevtklvssreagkklsevhphlkglvdlkleeleeeeileeadvvflAlphgvsaelvpellekg.vkvidlSadfRlkdaevYekwYgkkhekeelleeavYGlpElnreeikka..klianPGCyaTaalLalaPllkekliepksiivdaksGvSgAGr 185
                 ikv++vG +G  G+e++++l     p  ++  ++s r+ag+k+++    l       +ee++ e +++e+dvvflA++  ++ e+++++ e++   vid S++fR + +                   +   +pE+n ++ +k+  +lianP C +  al+alaPl k   i+  + i     + SgAG+
  MMETSP1137-20121227|3702_1 105 IKVGVVGVTGAVGKEIVQVLgdRGFPMSQLRLFASARSAGQKMDSSLGALA------IEEFTLE-AARECDVVFLAVSGDFALEWAEKISENDgPLVIDNSSAFRYDPS-------------------VPLIVPEINADAARKSkrRLIANPNCTTAIALMALAPLHKLFGIK--RCIXSTYQAASGAGA 266
                 69******************434579999998888888******8886553......3444444.3569*********************95549**********9954...................566789*9977666542279*******9999*******9877666..489999*******97 PP

>> TIGR01851  argC_other: N-acetyl-gamma-glutamyl-phosphate reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.7   0.0   9.4e-09   5.5e-06      49     146 ..     166     263 ..     105     301 .. 0.81

  Alignments for each domain:
  == domain 1    score: 23.7 bits;  conditional E-value: 9.4e-09
   TIGR01851  49 aadvailclpddaare.avslvdnpntkildastayrtaedwvyGfpelaaeqrekianakrvanPGcyatgaiallrPlveaGilPadfPvtinavsG 146
                   dv++l +  d a e a  + +n    ++d s+a+r  +     +pe++a+   k  + + +anP c ++ a++ l+Pl +   +   +  t++a sG
  MMETSP1137-20121227|3702_1 166 ECDVVFLAVSGDFALEwAEKISENDGPLVIDNSSAFRYDPSVPLIVPEINADAARK-SKRRLIANPNCTTAIALMALAPLHKLFGIKRCIXSTYQAASG 263
                 469*****99887777367788899999***********************98777.56799*********99*99***98754334444455555555 PP

>> TIGR01534  GAPDH-I: glyceraldehyde-3-phosphate dehydrogenase, type I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.0   8.6e-07    0.0005     129     182 ..     206     259 ..     160     264 .. 0.89
   2 ?   -2.3   0.0      0.73   4.3e+02     233     266 ..     334     367 ..     327     374 .. 0.83

  Alignments for each domain:
  == domain 1    score: 17.2 bits;  conditional E-value: 8.6e-07
   TIGR01534 129 aaitlVygvNeeeldeseekiiSaASCTTnclapllkvleeefgiksglmtTvH 182
                  ++ +V  +N +   +s++++i++  CTT      l +l++ fgik+   +T  
  MMETSP1137-20121227|3702_1 206 SVPLIVPEINADAARKSKRRLIANPNCTTAIALMALAPLHKLFGIKRCIXSTYQ 259
                 57889************************98888899*********99888865 PP

  == domain 2    score: -2.3 bits;  conditional E-value: 0.73
   TIGR01534 233 geavRvPtpdvSlvdlvlnlekevtkeevnaalk 266
                  + vR+Pt  +    +++++e++v+ ++  aal 
  MMETSP1137-20121227|3702_1 334 CTCVRIPTLRAHAEAITIETERPVDIAAAFAALX 367
                 6789*****9999999999999999888777775 PP

>> TIGR03466  HpnA: hopanoid-associated sugar epimerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.1   4.9e-05     0.029       3      77 ..     107     180 ..     105     188 .. 0.82

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 4.9e-05
   TIGR03466   3 vlvtGatGFvGsavvrllleeGeevrvlvrktsdrrnleeldvEiveGdlkdeaslkkalkGcealf.HvAAdyrl 77 
                 v v G+tG vG+++v++l ++G  +  l   +s r+  +++  +   G l+ e+   +a + c+++f  v  d+ l
  MMETSP1137-20121227|3702_1 107 VGVVGVTGAVGKEIVQVLGDRGFPMSQLRLFASARSAGQKM--DSSLGALAIEEFTLEAARECDVVFlAVSGDFAL 180
                 5689************************9999999885555..567899999999999999999998346666666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (436 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        72  (0.0175524); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.40u 0.11s 00:00:00.51 Elapsed: 00:00:00.53
# Mc/sec: 1085.80
//
Query:       MMETSP1137-20121227|3703_1  [L=413]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.3e-05   21.4   0.1     0.0077   13.6   0.0    2.5  2  TIGR03880 KaiC_arch_3: KaiC domain protein, AF_0351 family
    9.4e-05   20.1   0.0    0.00035   18.2   0.0    1.8  1  TIGR00231 small_GTP: small GTP-binding protein domain
  ------ inclusion threshold ------
      0.021   12.4   0.0       0.36    8.3   0.0    2.5  3  TIGR03598 GTPase_YsxC: ribosome biogenesis GTP-binding protein YsxC
      0.024   11.5   0.0      0.061   10.1   0.0    1.6  2  TIGR03594 GTPase_EngA: ribosome-associated GTPase EngA


Domain annotation for each model (and alignments):
>> TIGR03880  KaiC_arch_3: KaiC domain protein, AF_0351 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.8   0.0    0.0036       3.7      15      33 ..      67      85 ..      62      98 .. 0.83
   2 !   13.6   0.0   7.5e-06    0.0077      45     116 ..     182     257 ..     179     259 .. 0.88

  Alignments for each domain:
  == domain 1    score: 4.8 bits;  conditional E-value: 0.0036
   TIGR03880 15 egsvivviGeaGtGkttls 33
                ++ ++ ++G++ tGkt + 
  MMETSP1137-20121227|3703_1 67 ARPMVMLVGSYSTGKTSFI 85
                577999**********995 PP

  == domain 2    score: 13.6 bits;  conditional E-value: 7.5e-06
   TIGR03880  45 ekalyisleereeeilgsakskgwdleeyldk.slaiv...kLdpeelktalerlknelpelikelgasRvvvdsi 116
                 e+++++ ++ ++ +i +++ks+   le y dk  +++    +Ldp+el + ++ l   l++++k  ++ R+ v s+
  MMETSP1137-20121227|3703_1 182 EQVVLVMFDAHKVDISDEFKSMLQKLEGYDDKiRVVLNksdSLDPTELLKINSALTWSLARILKAPEVRRIYVGSF 257
                 78999999999*********************4444434445*****************************99875 PP

>> TIGR00231  small_GTP: small GTP-binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.0   3.4e-07   0.00035       4     126 ..      69     225 ..      66     239 .. 0.81

  Alignments for each domain:
  == domain 1    score: 18.2 bits;  conditional E-value: 3.4e-07
   TIGR00231   4 ikivivGhvdvGKstLlnsllknkisiteskp..gvtrdyvteqieedGkt........................................ykvnllDTaG...qedfdairrlyvreverslevvdivilvldveeglekqtkeiiheakkkgvpiilvvnKiDlkd 126
                   + +vG+ + GK++ +  ll+++ ++   +    +t+++ +  i++ +++                                           +l+DT+G    ++  ++r+  +   +++l ++d      d+++  ++  ++++ + +    +i++v+nK D  d
  MMETSP1137-20121227|3703_1  69 PMVMLVGSYSTGKTSFIRFLLEKD-FPGMHVGpePTTDKFQA--IMYGPEErvlpgnalvsnpatpfhelsqfgnaflgrfvgcevnsdfvRGCTLIDTPGilaGKKQTQDRD--YSYEQVVLVMFDAHKV--DISDEFKSMLQKLEGYDD----KIRVVLNKSDSLD 225
                 568999********9999999999.87776655678888877..9999998999999**************************999999987899******644333334444..5555668999999999..888888788899998888....**********877 PP

>> TIGR03598  GTPase_YsxC: ribosome biogenesis GTP-binding protein YsxC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.0      0.08        82      16      41 ..      66      91 ..      57      94 .. 0.84
   2 ?    8.3   0.0   0.00035      0.36     103     157 ..     184     239 ..     176     255 .. 0.79
   3 ?   -3.6   0.0       1.6   1.6e+03     114     143 ..     375     405 ..     369     408 .. 0.68

  Alignments for each domain:
  == domain 1    score: 0.6 bits;  conditional E-value: 0.08
   TIGR03598 16 dklpeiafaGrSNvGKSsliNaLtnr 41
                d  p + ++G    GK s+i  L+++
  MMETSP1137-20121227|3703_1 66 DARPMVMLVGSYSTGKTSFIRFLLEK 91
                5678899*************999875 PP

  == domain 2    score: 8.3 bits;  conditional E-value: 0.00035
   TIGR03598 103 gvvllvDi.rhelkelDlellellkeakipvlvvltKaDklkkselkkalkkvkke 157
                  v++++D+ +++++++ +++l+ l+ ++ ++ vvl+K+D l+ +el k  ++++ +
  MMETSP1137-20121227|3703_1 184 VVLVMFDAhKVDISDEFKSMLQKLEGYDDKIRVVLNKSDSLDPTELLKINSALTWS 239
                 3556667625667778899***********************99998877766655 PP

  == domain 3    score: -3.6 bits;  conditional E-value: 1.6
   TIGR03598 114 lkelDlellellkea.kipvlvvltKaDklk 143
                 +k+lD +ll+ l++  + ++ ++++K D + 
  MMETSP1137-20121227|3703_1 375 FKKLDDKLLAQLDAIiANDIGMLMSKFDSIP 405
                 5667777776666542667788888888776 PP

>> TIGR03594  GTPase_EngA: ribosome-associated GTPase EngA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0      0.83   8.5e+02     177     198 ..      70      91 ..      61      93 .. 0.67
   2 ?   10.1   0.0     6e-05     0.061      51     123 ..     160     226 ..     153     251 .. 0.60

  Alignments for each domain:
  == domain 1    score: -3.5 bits;  conditional E-value: 0.83
   TIGR03594 177 kiaiiGrpNvGKStLvNallge 198
                  + ++G   +GK +++  ll++
  MMETSP1137-20121227|3703_1  70 MVMLVGSYSTGKTSFIRFLLEK 91 
                 4566777777777777666655 PP

  == domain 2    score: 10.1 bits;  conditional E-value: 6e-05
   TIGR03594  51 iliDTgGleeeedelekeireqaelaieeadvilfvvdare.glteeDeeiaklLrkskkpvilvvNKvdnkke 123
                 +liDT+G+ + +++         +   +  +v+l+++da++  +++e +++ + L+ ++ ++ +v+NK+d+ + 
  MMETSP1137-20121227|3703_1 160 TLIDTPGILAGKKQT-------QDRDYSYEQVVLVMFDAHKvDISDEFKSMLQKLEGYDDKIRVVLNKSDSLDP 226
                 566666663333221.......1223333456677777655245555566777777777777777777776543 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (413 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       209  (0.0509508); expected 82.0 (0.02)
Passed bias filter:                      190  (0.0463189); expected 82.0 (0.02)
Passed Vit filter:                        25  (0.00609459); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.39u 0.14s 00:00:00.53 Elapsed: 00:00:00.69
# Mc/sec: 790.02
//
Query:       MMETSP1137-20121227|3704_1  [L=359]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (359 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       117  (0.0285227); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.14s 00:00:00.42 Elapsed: 00:00:00.70
# Mc/sec: 676.92
//
Query:       MMETSP1137-20121227|3705_1  [L=256]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (256 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        78  (0.0190151); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.14s 00:00:00.35 Elapsed: 00:00:00.51
# Mc/sec: 662.53
//
Query:       MMETSP1137-20121227|3706_1  [L=204]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (204 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        53  (0.0129205); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.12s 00:00:00.29 Elapsed: 00:00:00.30
# Mc/sec: 897.53
//
Query:       MMETSP1137-20121227|3707_1  [L=344]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (344 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       155  (0.0377864); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.17s 00:00:00.43 Elapsed: 00:00:00.40
# Mc/sec: 1135.11
//
Query:       MMETSP1137-20121227|3708_1  [L=265]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (265 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       126  (0.0307167); expected 82.0 (0.02)
Passed bias filter:                      113  (0.0275475); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.15s 00:00:00.40 Elapsed: 00:00:00.79
# Mc/sec: 442.75
//
Query:       MMETSP1137-20121227|3709_1  [L=191]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (191 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        97  (0.023647); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.16s 00:00:00.34 Elapsed: 00:00:00.27
# Mc/sec: 933.70
//
Query:       MMETSP1137-20121227|3710_1  [L=232]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (232 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        93  (0.0226719); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.16s 00:00:00.37 Elapsed: 00:00:00.42
# Mc/sec: 729.08
//
Query:       MMETSP1137-20121227|3715_1  [L=418]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.7e-68  228.2   0.0    4.6e-68  227.4   0.0    1.4  2  TIGR00535 SAM_DCase: S-adenosylmethionine decarboxylase proenzyme


Domain annotation for each model (and alignments):
>> TIGR00535  SAM_DCase: S-adenosylmethionine decarboxylase proenzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  227.4   0.0   1.1e-71   4.6e-68       1     293 [.      19     322 ..      19     362 .. 0.90
   2 ?   -3.0   0.0      0.14   5.8e+02     196     211 ..     395     410 ..     364     413 .. 0.77

  Alignments for each domain:
  == domain 1    score: 227.4 bits;  conditional E-value: 1.1e-71
   TIGR00535   1 feGaeklLeitffeakksvdeekgLRalsreqldeiLdlakCeilsskknkelDsyvLsesslfiidikiilktCGttklLlalpkilqlaeklssllkvksvkYsRksflfPsaqaalhrnfseevevLdkffdkgkayvlGdnaksqkWhlYvaeteretpk...........eedpdetlevlmteLdkekaskfvkssaast.............tnlakemtkssgideiipesaeisDldfePCGYsmnailaekaystihvtPekgfsyasfesniidqkkldysdlvkrvLrvfePsefsvtvfaknaq 293
                 feG+ek+Le++f ++++      gLR+ s   + e+L  a C+ils k n+e+D+y+Lsesslf++ ++++lktCGtt+lLl lpk+l+++e+l    +++  +Y    + fP++q  +h +f ee ++L   f+      lG  + s  W + ++++e+++ +               d  le+ m +L  ++   f + sa+s              ++la+ mt  sg++e++p   ei D  fePCGYsmn +    +y+t+h+tPe +fsyasfe+n  d +  d +  v+r++r f Ps   vt++++ + 
  MMETSP1137-20121227|3715_1  19 FEGPEKKLEVYFKPTQRA----NGLRQYSAPVWSELLVDAACTILSVKGNDEFDAYLLSESSLFVYPYRVVLKTCGTTTLLLVLPKLLRMVEELG--SSLELLQYGHLRYKFPEQQVFPHGSFMEERDYLXDLFGXVTECELGPRDCS--WSMLSVSKEPSEANexsvyrtpptsPPGGDDXLEIAMEGLALDVCALFCRASAPSAesvygasgatpveRELATRMTVASGLRELLPG-VEIDDWAFEPCGYSMNGLRD-GYYYTVHITPEPAFSYASFETN--DPSYRDTEY-VRRIVRAFAPSLAVVTLTTRRIG 322
                 9***********998877....9***********************************************************************9..6778899***************************************99988..********999876788887776543345889*********************99999**********99*****************9.******************99.9*********************..666666555.55***************998875 PP

  == domain 2    score: -3.0 bits;  conditional E-value: 0.14
   TIGR00535 196 tnlakemtkssgidei 211
                  n+a++mt+ s+i e+
  MMETSP1137-20121227|3715_1 395 PNCAEQMTEPSRIPEM 410
                 68999***99999775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (418 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        52  (0.0126767); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.29u 0.15s 00:00:00.43 Elapsed: 00:00:00.38
# Mc/sec: 1451.88
//
Query:       MMETSP1137-20121227|3716_1  [L=396]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (396 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        59  (0.0143832); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.17s 00:00:00.46 Elapsed: 00:00:00.45
# Mc/sec: 1161.50
//
Query:       MMETSP1137-20121227|3717_1  [L=372]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (372 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        74  (0.01804); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.13s 00:00:00.39 Elapsed: 00:00:00.39
# Mc/sec: 1258.97
//
Query:       MMETSP1137-20121227|3718_1  [L=65]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (65 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        36  (0.00877621); expected 82.0 (0.02)
Passed bias filter:                       31  (0.00755729); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.15s 00:00:00.26 Elapsed: 00:00:00.25
# Mc/sec: 343.17
//
Query:       MMETSP1137-20121227|3719_1  [L=313]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.2e-12   45.8   8.4    1.5e-12   45.3   5.8    1.1  1  TIGR01476 chlor_syn_BchG: bacteriochlorophyll/chlorophyll synthetase
      1e-10   39.4   3.3    1.7e-10   38.7   2.3    1.3  1  TIGR01475 ubiA_other: putative 4-hydroxybenzoate polyprenyltransferase
    2.3e-06   25.1   7.4    3.1e-06   24.7   5.2    1.2  1  TIGR01474 ubiA_proteo: 4-hydroxybenzoate polyprenyl transferase


Domain annotation for each model (and alignments):
>> TIGR01476  chlor_syn_BchG: bacteriochlorophyll/chlorophyll synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.3   5.8   1.1e-15   1.5e-12      24     217 ..      59     257 ..      51     286 .. 0.83

  Alignments for each domain:
  == domain 1    score: 45.3 bits;  conditional E-value: 1.1e-15
   TIGR01476  24 vasGalrgs....vekflklLlgmllaGPlltGlsqavndyaD..rdvDa.inePqrpiPsGaislrevlililvltvlglavalvlgrwvivlltvlGvvlaliys..lePiklkrngWlG.nalvalsyvglaWlaGhavfaaltleivvvaLlyslaaaGilvlnDfksveGDrklGlrslpvalGvkvaaklavvvidva 217
                 va Ga+       +   ++lLl++ l+  ++tG s ++ndy D  r vD    +P rp+  G isl ev   ++ +  l l++  +l +++  l ++   +++++ys  l+P+   +n        +al+  +++  aG   +a++   +vvv     +a     +l D+   eGD + G+++lpv lGv +a+ l +v ++ a
  MMETSP1137-20121227|3719_1  59 VALGAYGARsiavPGATPQLLLAAALT-VIVTGTSMVINDYHDfkRGVDThATKPGRPLVKGDISLAEVKAFLIWVYSLHLGLLCLLSSKATRLWVLSSTMITYLYSqyLKPVPALKNIICAlTVSMALGLGAMSVTAGLSGLASVWRPMVVVG----GAICHREILMDILDAEGDAITGVKTLPVVLGVARALALSFVPLGLA 257
                 555555544444466778899999888.599**********987799**83579*****************99999999999999******999************96679*98766665541677999999*******999999877777764....33333456779**************************999987766 PP

>> TIGR01475  ubiA_other: putative 4-hydroxybenzoate polyprenyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.7   2.3   1.2e-13   1.7e-10      37     213 ..      77     256 ..      49     285 .. 0.82

  Alignments for each domain:
  == domain 1    score: 38.7 bits;  conditional E-value: 1.2e-13
   TIGR01475  37 klililvalvsaRtaamavnrlideeiDakNPRtk.nrelvsGkiskkeavtliilslilfliasyflNklafiLspvv.llvliiyp.ylKRftalahlvLglvlglavlagavavigeisillvavllvigvvfwvagfDliyaiqDlefDkknglksiparfGvkaalkiaslshvi 213
                 +l+l     v +  ++m +n   d +  ++   tk  r+lv+G is +e+ +++i    l+l    +l   a  L ++  +++ + y+ ylK   al +++ +l+  +a   ga+ v+  +s l   +  ++ v   +    ++  i D+e D  +g+k++p+ +Gv +al ++ +   +
  MMETSP1137-20121227|3719_1  77 QLLLAAALTVIVTGTSMVINDYHDFKRGVDTHATKpGRPLVKGDISLAEVKAFLIWVYSLHLGLLCLLSSKATRLWVLSsTMITYLYSqYLKPVPALKNIICALTVSMALGLGAMSVTAGLSGLASVWRPMVVVGGAICHREILMDILDAEGDAITGVKTLPVVLGVARALALSFVPLGL 256
                 34444444455566899*****999888777777647************************999999999999888875266777776489*******************************98888988999999999**********************************9876554 PP

>> TIGR01474  ubiA_proteo: 4-hydroxybenzoate polyprenyl transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.7   5.2   2.3e-09   3.1e-06       4     218 ..      43     258 ..      40     289 .. 0.69

  Alignments for each domain:
  == domain 1    score: 24.7 bits;  conditional E-value: 2.3e-09
   TIGR01474   4 ylkLaRldk.PvgtlllllPalwsillaaeaasllpalllLllftvGallmrgaGCviNDlvDrdlDkkVeRtk.sRPlasgavsvkqalllllvlllvalgvllllnkltillgvaslalv.liYP.llKRitylpQlvLglafswgvllgfaavagklstaaivLylasil..WtlgY.DTiyamqDkedDakigvkstallfgdktksvlailyaltil 218
                 +lk++Rl+  P+g  l+ l a+ +  +a    +++p+lll +++   ++++ g+  viND+ D +     + tk  RPl++g++s  + +++l  +  + lg+l ll++ +  l v+s +++ ++Y  +lK +  l  ++ +l+ s +  lg   v+  ls  a  ++   ++   ++ + + +  + D e Da  gvk+  +++g     +l+ + ++   
  MMETSP1137-20121227|3719_1  43 ILKMLRLNAlPMGAGLVALGAYGARSIAVP--GATPQLLLAAAL---TVIVTGTSMVINDYHDFKRGVDTHATKpGRPLVKGDISLAEVKAFLIWVYSLHLGLLCLLSSKATRLWVLSSTMItYLYSqYLKPVPALKNIICALTVSMALGLGAMSVTAGLSGLAS-VWRPMVVvgGAICHrEILMDILDAEGDAITGVKTLPVVLGVARALALSFVPLGLAG 258
                 677778764499999999999998888888..444444433333...456678889******96554444455526*******************************9999999888766651567536788888888888888888888887777777777666.454333311344441556778999999999**999999998877766655444333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (313 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       176  (0.0429059); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.27u 0.12s 00:00:00.39 Elapsed: 00:00:00.40
# Mc/sec: 1032.81
//
Query:       MMETSP1137-20121227|3720_1  [L=117]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (117 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        42  (0.0102389); expected 82.0 (0.02)
Passed bias filter:                       38  (0.00926377); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.13s 00:00:00.28 Elapsed: 00:00:00.28
# Mc/sec: 532.51
//
Query:       MMETSP1137-20121227|3721_1  [L=373]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (373 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        40  (0.00975134); expected 82.0 (0.02)
Passed bias filter:                       38  (0.00926377); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.17s 00:00:00.43 Elapsed: 00:00:00.43
# Mc/sec: 1144.93
//
Query:       MMETSP1137-20121227|3722_1  [L=144]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.025   11.7   0.0      0.026   11.7   0.0    1.1  1  TIGR03896 cyc_nuc_ocin: bacteriocin-type transport-associated protein


Domain annotation for each model (and alignments):
>> TIGR03896  cyc_nuc_ocin: bacteriocin-type transport-associated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   6.4e-06     0.026      54     123 ..      28      97 ..       2     127 .. 0.66

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 6.4e-06
   TIGR03896  54 elaeLsrGelvGemslleerppvatikaveksrllsipveeLaaklqsdvalaaslYrviaeklalqiqn 123
                  l eL+ G+ +G++ l+ +     +  a+e+s  l i +eeLa  l+    l++s+ + + e ++ ++++
  MMETSP1137-20121227|3722_1  28 VLRELRAGDSLGNTGLIHDSWWEYSAVATEDSWTLTITREELADLLRGRPELSHSVLQGVYETFTRRLRQ 97 
                 3566777777777777777777777777777777777777777777666666666666655555555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (144 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        69  (0.0168211); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.18u 0.18s 00:00:00.36 Elapsed: 00:00:00.26
# Mc/sec: 731.02
//
Query:       MMETSP1137-20121227|3723_1  [L=285]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      4e-64  214.4   0.1    5.1e-64  214.0   0.0    1.1  1  TIGR00419 tim: triose-phosphate isomerase


Domain annotation for each model (and alignments):
>> TIGR00419  tim: triose-phosphate isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  214.0   0.0   1.2e-67   5.1e-64       1     228 []       6     237 ..       6     237 .. 0.96

  Alignments for each domain:
  == domain 1    score: 214.0 bits;  conditional E-value: 1.2e-67
   TIGR00419   1 lviinfKln.esvgkvelevaklaeevaseagvevavappfvdldvvkdeveseiqvaAqnvdavksGaftGeisAemlkdlGakgvligHsErRsllkeadeliekkvarlkelglksvvCvgetleereaartinnvattaaaaA....lepdvvAvEPveliGtGkpvskAeaevveksvrdhlkk.vskevaesvrvlyGasvtaaedaelaaqldvdGvLlasavlkae 228
                 +v++n+K+n +sv k + +va+l++   +++++ev v p  v+++ v+ + +  ++v  qn++ +  Ga+tGe+sAe l+d+ +++vl+gHsErR ++ke d ++++k+a++ ++glk v  +ge +eere+++t++++ ++ + +       ++v+A+EPv++iGtG ++++  a++ ++ +r ++++ vs+e ae +r++yG+s +++++ +l  q+d+dG+L+++a+lk+e
  MMETSP1137-20121227|3723_1   6 IVGGNWKCNpDSVAKLDXLVANLNA--CDTSKCEVYVCPVSVHIPLVQSKFKEGVMVCPQNCNFKGCGAYTGEVSAEQLVDMKIEWVLLGHSERREYFKEDDTMLATKLAYVLDKGLKCVFAIGEKKEERESGKTMEVLIKQMEQIKglldPAKVVIAYEPVWAIGTGLTATPEVAQETHADIRKWIAEnVSAECAEGIRIQYGGSANGKNAPDLSKQPDIDGFLVGGASLKPE 237
                 699****8758************87..789999************************************************************************************************************999998884445689********************************99******************************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (285 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       106  (0.0258411); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.24u 0.16s 00:00:00.40 Elapsed: 00:00:00.35
# Mc/sec: 1074.77
//
Query:       MMETSP1137-20121227|3724_1  [L=343]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (343 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        57  (0.0138957); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.16s 00:00:00.42 Elapsed: 00:00:00.64
# Mc/sec: 707.38
//
Query:       MMETSP1137-20121227|3725_1  [L=514]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (514 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        54  (0.0131643); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.15s 00:00:00.51 Elapsed: 00:00:00.67
# Mc/sec: 1012.57
//
Query:       MMETSP1137-20121227|3726_1  [L=146]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (146 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        50  (0.0121892); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.14s 00:00:00.30 Elapsed: 00:00:00.45
# Mc/sec: 428.23
//
Query:       MMETSP1137-20121227|3727_1  [L=583]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.4e-71  237.2   0.0    6.3e-65  217.3   0.0    2.1  2  TIGR01982 UbiB: 2-polyprenylphenol 6-hydroxylase
     0.0058   13.9   0.0      0.011   13.1   0.0    1.4  1  TIGR03724 arch_bud32: Kae1-associated kinase Bud32


Domain annotation for each model (and alignments):
>> TIGR01982  UbiB: 2-polyprenylphenol 6-hydroxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  217.3   0.0     3e-68   6.3e-65      38     354 ..      93     417 ..      73     423 .. 0.88
   2 !   17.9   0.0   9.8e-08    0.0002     356     434 ..     450     528 ..     427     530 .. 0.88

  Alignments for each domain:
  == domain 1    score: 217.3 bits;  conditional E-value: 3e-68
   TIGR01982  38 vskeearkeslgerlrlaleelGPifiKlGQvlstRaDllpeeiaeeLslLqdkvppfdlkaarkvieaelgkpveelFaefeek..PlAaASiaQvhkAvlveg.keVavKvlRPgiekkieadikllellaklvekllpe........akrlrp.tevvkefektlkeEldlrlEaanaselkenfkn..dkklivPevyweltservltlewidgipvsdleklkeaGldlkalaenlvesflkqvlrdgfFHaDlHpGNilvakdgkiialDfGivgrlseeerrylaeillgflerdykrvaevhleagyvpsdtdlaeleqaira 354
                  +++ear  +++ r+r+ l +lGP+fiK+GQ+ls R+D++p+  + eL++L+d+vpp++++++ + i+++lg+    +Fae+e +  P+AaAS++Qv+k +l++  ++Va+Kv+RP++ +++++d+ ll++  + ve + ++        a+r  + +++ ++f+ +   Eld+r Eaan +++++ +    + k+++P+   +lt+++vl+ ewi+g +++   +        +al   +v  fl+q l  g+FH+D+HpGN+lv++ g+++++D+ + ++++  + r+l   l+ +++ d ++++e  + + ++p d+d ael   + +
  MMETSP1137-20121227|3727_1  93 EETIEARTAERARRVRTLLTDLGPTFIKFGQMLSIRPDVIPPAAVYELQKLCDAVPPYPTAVSLALIQEQLGCDPALIFAELEATsaPIAAASLGQVFKCRLKSSdEQVALKVQRPDMVRAVSRDLYLLRRYMAAVEWFKEKvltgllgaAERGAFdVNLLDTFAGASFLELDYRHEAANMQRFTDTLLPmlNGKVYIPKCHHDLTTRKVLVSEWIEGEQLAKSSAS-----TINALIPIGVDCFLAQLLVVGYFHSDPHPGNLLVDAAGRLVLIDC-LCAEIDAFDSRALTSALVHLMRGDVAALVEDAVALRFLPRDVDRAELLPPLTH 417
                 4556778899***************************************************************88888****97444***************97559**********************9998888877665222222224555554799**************************986522679***********************887665554.....4669999*************************************9.89*****************************************9998766555 PP

  == domain 2    score: 17.9 bits;  conditional E-value: 9.8e-08
   TIGR01982 356 gepivgkplkeisigklLaklfkitekfelevqpeLlLLqKtlltvEGvgrqldpdldlwkvaepvvkklikkklspka 434
                 ge   +   +  +++++ ++l +i  +f  +v+  ++L+ ++l+++EG++ + d d+dl +++ p+  + + + ++pk+
  MMETSP1137-20121227|3727_1 450 GESRANVATRRAQFSAISRELNQIFFNFPFSVPEYFALITRALIVLEGIALTGDKDFDLFSASYPLALRHAARLFGPKQ 528
                 56666777778889999999**********************************************9999999998886 PP

>> TIGR03724  arch_bud32: Kae1-associated kinase Bud32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.1   0.0   5.2e-06     0.011      58     137 ..     287     368 ..     263     396 .. 0.78

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 5.2e-06
   TIGR03724  58 gvntPvvydvdpeekkivmeyiegkklkdlleekelellkevGe..lvgklHkagivhgDlttsNiiv.kddklyliDfGLgk 137
                  v  P   +  + +k +v e ieg++l ++  + + ++l  +G    +++l   g  h D+++ N++v  +++l+liD   ++
  MMETSP1137-20121227|3727_1 287 KVYIPKCHHDLTTRKVLVSEWIEGEQLAKSSAS-TINALIPIGVdcFLAQLLVVGYFHSDPHPGNLLVdAAGRLVLIDCLCAE 368
                 56667766666778999***********99999.557777777622689*******************5589******86555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (583 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       127  (0.0309605); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.16s 00:00:00.57 Elapsed: 00:00:00.43
# Mc/sec: 1789.53
//
Query:       MMETSP1137-20121227|3728_1  [L=376]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (376 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        50  (0.0121892); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.14s 00:00:00.42 Elapsed: 00:00:00.38
# Mc/sec: 1306.00
//
Query:       MMETSP1137-20121227|3729_1  [L=219]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (219 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       121  (0.0294978); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.12s 00:00:00.34 Elapsed: 00:00:00.33
# Mc/sec: 875.93
//
Query:       MMETSP1137-20121227|3730_1  [L=594]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.2e-09   32.3   0.1    1.4e-07   28.1   0.1    2.0  1  TIGR04154 archaeo_STT3: oligosaccharyl transferase, archaeosortase system-associated


Domain annotation for each model (and alignments):
>> TIGR04154  archaeo_STT3: oligosaccharyl transferase, archaeosortase system-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.1   0.1   3.4e-11   1.4e-07     347     554 ..      36     271 ..      22     273 .. 0.74

  Alignments for each domain:
  == domain 1    score: 28.1 bits;  conditional E-value: 3.4e-11
   TIGR04154 347 tiaEaqpllleegelslaralsef.glafllalaglllllyrllkkkskaeelfvlvWsvfilvatltqvRFeYylavnvavlsAyllswll..........................leelkkelkkskkskkeketkkask...............................ivvvvllilllvllvpsv...................aaaaaqssgpggankdWedsleWlkenTPdtgldyygiYeekddfdypeesYGVlSWWDYGhwItvigeRipna 554
                  +aE qp          ++a +++ +    la +g+ + l+++      +++lf++++++++  +  +  R   +l  +++ l +++l++l+                          +                +++kk++                                 ++++l + ll  ++p +                   +  a+ ++g++ ++ d +++  Wl++ TP+                       V+ WWDYG  It igeR  +a
  MMETSP1137-20121227|3730_1  36 SVAEHQP--------ANEQAYQHYlHHIYHLAPFGFGISLLHWS-----DSNLFLVLYALVAYHFSNKMARLIILLGPVASALGGVCLGFLFdqlllyaivraddkegdtdkekkaeeK----------------NDEKKEVPagrkkkgkaalseasahfaalidlvkemdgaGAAIALGVYLLQQAYPKAvefydyshqlaeglsqpqiMFKAKLYNGQEVMVDDYREAYWWLRDHTPEDA--------------------RVMAWWDYGYQITGIGERTTIA 271
                 5666666........22334444413444466677777776664.....589*************************************887888899999987776655433322221................1111111123333455667788889999999999998765555555555666677778999999999999999998777778888899*****************998....................3*****************9887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (594 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       113  (0.0275475); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.17s 00:00:00.63 Elapsed: 00:00:00.38
# Mc/sec: 2063.20
//
Query:       MMETSP1137-20121227|3731_1  [L=327]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (327 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        65  (0.0158459); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.15s 00:00:00.42 Elapsed: 00:00:00.32
# Mc/sec: 1348.76
//
Query:       MMETSP1137-20121227|3732_1  [L=505]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (505 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        63  (0.0153584); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.16s 00:00:00.47 Elapsed: 00:00:00.34
# Mc/sec: 1960.43
//
Query:       MMETSP1137-20121227|3733_1  [L=77]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (77 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        63  (0.0153584); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.18s 00:00:00.31 Elapsed: 00:00:00.31
# Mc/sec: 327.84
//
Query:       MMETSP1137-20121227|3734_1  [L=154]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (154 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        69  (0.0168211); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.10s 00:00:00.28 Elapsed: 00:00:00.34
# Mc/sec: 597.83
//
Query:       MMETSP1137-20121227|3735_1  [L=542]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (542 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       129  (0.0314481); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.17s 00:00:00.56 Elapsed: 00:00:00.64
# Mc/sec: 1117.78
//
Query:       MMETSP1137-20121227|3736_1  [L=359]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.4e-10   36.2   0.2    1.9e-09   35.2   0.1    1.5  1  TIGR02552 LcrH_SycD: type III secretion low calcium response chaperone LcrH/SycD
    6.1e-09   33.6   0.0    9.4e-09   33.0   0.0    1.2  1  TIGR02521 type_IV_pilW: type IV pilus biogenesis/stability protein PilW
    8.7e-08   28.3   0.0    1.2e-07   27.8   0.0    1.1  1  TIGR02917 PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein
    1.3e-06   24.8   0.0    1.7e-06   24.4   0.0    1.1  1  TIGR03939 PGA_TPR_OMP: poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA
     0.0065   12.9   0.0      0.009   12.5   0.0    1.1  1  TIGR00990 3a0801s09: mitochondrial precursor proteins import receptor


Domain annotation for each model (and alignments):
>> TIGR02552  LcrH_SycD: type III secretion low calcium response chaperone LcrH/SycD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.2   0.1   2.3e-12   1.9e-09      28     120 ..     219     311 ..     214     324 .. 0.90

  Alignments for each domain:
  == domain 1    score: 35.2 bits;  conditional E-value: 2.3e-12
   TIGR02552  28 lyqqgkyeeAeklFqlLaaldpteakywlgLaaclqalkeyeeAiaaYalaaaldlddprpvyhaaecllalgekeeAlkaLklaieiaeeke 120
                 + q+g+++e ++  q+  a+ p +++ w+  +acl+ +++  eA+ +Y++a +l++ dp+p+  ++  +l+ g  + A  +++  +e++  +e
  MMETSP1137-20121227|3736_1 219 AAQKGDWQEELRQLQFALAVCPKDHELWYDQGACLHDAGRLLEAARCYERAIQLEPRDPQPYNNLGAIHLEFGSHRHAFTCFRKSLERDPYNE 311
                 568899999999999999999***************************************************************999998666 PP

>> TIGR02521  type_IV_pilW: type IV pilus biogenesis/stability protein PilW
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.0   0.0   1.2e-11   9.4e-09      43     161 ..     221     337 ..     207     351 .. 0.91

  Alignments for each domain:
  == domain 1    score: 33.0 bits;  conditional E-value: 1.2e-11
   TIGR02521  43 eqgdlekAkenlekAleldpkdadanlalAlyyqqlgelekAeesfrkAltlkpnngdvlNNYGtFLcqqkkyeeAeqqfeaAiedpkYeqparsyeNaglcalkagdtekaekyltra 161
                 ++gd ++  ++l+ Al++ pkd + +   +  + + g+l +A++ +++A++l+p +++ +NN G+   + +   +A + f++ +e   Y++   +  Na+  ++++g+   a+  l+ +
  MMETSP1137-20121227|3736_1 221 QKGDWQEELRQLQFALAVCPKDHELWYDQGACLHDAGRLLEAARCYERAIQLEPRDPQPYNNLGAIHLEFGSHRHAFTCFRKSLERDPYNED--AAMNAISLLASLGKPSAARRVLHAL 337
                 6789999999*******************************************************************************875..5678888888889888888888765 PP

>> TIGR02917  PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.8   0.0   1.5e-10   1.2e-07     579     695 ..     221     337 ..     215     340 .. 0.86

  Alignments for each domain:
  == domain 1    score: 27.8 bits;  conditional E-value: 1.5e-10
   TIGR02917 579 skgelkkalaileeaadlapdspellellgraqlaakdlkkavesfkkllelqpdsalalllladvyavaknkakAltslkkaLelkpdnteaqlllaqLlleekrleeAlkllkel 695
                 +kg+ +  l  l+ a+++ p+  el+   g  +  a+ l +a ++++ +++l+p  ++++  l +++  +    +A t  +k+Le++p n +a +  ++Ll+  +++++A ++l+ l
  MMETSP1137-20121227|3736_1 221 QKGDWQEELRQLQFALAVCPKDHELWYDQGACLHDAGRLLEAARCYERAIQLEPRDPQPYNNLGAIHLEFGSHRHAFTCFRKSLERDPYNEDAAMNAISLLASLGKPSAARRVLHAL 337
                 566666677778888889999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999988765 PP

>> TIGR03939  PGA_TPR_OMP: poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.4   0.0     2e-09   1.7e-06      98     211 ..     221     334 ..     210     351 .. 0.92

  Alignments for each domain:
  == domain 1    score: 24.4 bits;  conditional E-value: 2e-09
   TIGR03939  98 nekqwdkAlelyrkllqrdPknpdlllGlaltladagkdeeAlkalkelkerfpsdaerlealaYvlraaedsldalaaiqqalrlePdnkellkelveiltrlgapalaarla 211
                 ++++w++ l   + +l   Pk+ +l+  +   l dag+  eA    +++ + +p+d + +++l+ +  + + +  a+ +  + l+++P n++++ + + +l++lg+p +a r +
  MMETSP1137-20121227|3736_1 221 QKGDWQEELRQLQFALAVCPKDHELWYDQGACLHDAGRLLEAARCYERAIQLEPRDPQPYNNLGAIHLEFGSHRHAFTCFRKSLERDPYNEDAAMNAISLLASLGKPSAARRVL 334
                 678999999999***********************************************************************************************9988765 PP

>> TIGR00990  3a0801s09: mitochondrial precursor proteins import receptor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.5   0.0   1.1e-05     0.009     371     462 ..     215     306 ..     209     320 .. 0.86

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 1.1e-05
   TIGR00990 371 rasinlelgdsdkaeedfdkalkkdsedsdiyyhraqlhfikgefaeaakdydksidldpdfifsyiqlavlqyklgsiassealfrrakkk 462
                 ra   +++gd ++   +++ al+  ++d +++y ++      g   eaa+ y+++i+l+p    +y  l+ +    gs   + + fr++  +
  MMETSP1137-20121227|3736_1 215 RARKAAQKGDWQEELRQLQFALAVCPKDHELWYDQGACLHDAGRLLEAARCYERAIQLEPRDPQPYNNLGAIHLEFGSHRHAFTCFRKSLER 306
                 66677888888888899999999999999999999998889999999999999999999999999999999999999999999999998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (359 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        78  (0.0190151); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.29u 0.15s 00:00:00.43 Elapsed: 00:00:00.44
# Mc/sec: 1076.91
//
Query:       MMETSP1137-20121227|3737_1  [L=360]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.9e-13   47.1   0.0    1.1e-12   45.5   0.0    1.6  2  TIGR01536 asn_synth_AEB: asparagine synthase (glutamine-hydrolyzing)
  ------ inclusion threshold ------
      0.014   12.5   0.0      0.018   12.1   0.0    1.2  1  TIGR00552 nadE: NAD+ synthetase
      0.035   10.1   0.3       0.11    8.5   0.2    1.7  1  TIGR03104 trio_amidotrans: asparagine synthase family amidotransferase


Domain annotation for each model (and alignments):
>> TIGR01536  asn_synth_AEB: asparagine synthase (glutamine-hydrolyzing)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.5   0.0   8.4e-16   1.1e-12     252     390 ..      23     181 ..       2     229 .. 0.74
   2 ?   -1.1   0.0      0.11   1.5e+02     486     503 ..     235     252 ..     188     256 .. 0.69

  Alignments for each domain:
  == domain 1    score: 45.5 bits;  conditional E-value: 8.4e-16
   TIGR01536 252 dvpvgvllSGGlDSslvaaiakkeak...........sevktFsigfedskdldesk.................aarkvadelgtehkevliseeevlke.leevilale..eptairasiplyllsklarekgvkVvLsGeGaDElfgGYeyfreakaeealelpease 390
                  ++v ++lSGG+D  ++ a a +              +          ds+d  + +                 +a+++a+e+ + h+ v ++  ++++  l+  + +l   + ++ r+s  + +++++a+e g+k ++ G+GaDEl+gGY+   +ak +++++  + s 
  MMETSP1137-20121227|3737_1  23 ADRV-LILSGGVDTCAILAAAMETNVafaaaitvitsE----------DSPDXTNVAfaaaitvitsedspdrpFAAAAAAEHTLPHHIVFMTTGDLVERhLPACVNILKtfDGMTLRNSLVVAAAMQKASELGFKHAIVGDGADELLGGYSFMWKAKDAAEWKEKRDSM 181
                 4444.689*****9988766665544355444444440..........45555544466666666666666777********************9999865999999988889999********************************************9999333222 PP

  == domain 2    score: -1.1 bits;  conditional E-value: 0.11
   TIGR01536 486 lklrdgkeKvlLreaaee 503
                  ++++++ K++Lrea+++
  MMETSP1137-20121227|3737_1 235 ERIEHETGKIVLREAFAT 252
                 456788899999999875 PP

>> TIGR00552  nadE: NAD+ synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   1.3e-05     0.018       5     115 ..       5     111 ..       1     160 [. 0.59

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 1.3e-05
   TIGR00552   5 vveeledflkekvkksgakgvvlGlSGGiDSavvaalavealgkeevlalilpesnqaseqdvqdalalveklgietkeikiepiaaslqakkeklseekdklakgNlkaR 115
                   ++l++ + +  ++++a   vl lSGG+D  ++ a a e+      +a+ +  +++++  d ++ +a++  + + t e + +  +a++ a++++l ++  ++++g l  R
  MMETSP1137-20121227|3737_1   5 CRKQLCQSMSQIGARTNAADRVLILSGGVDTCAILAAAMETNVA---FAAAITVITSEDSPDXTN-VAFAAAITVITSEDSPDRPFAAAAAAEHTLPHHIVFMTTGDLVER 111
                 56788888888888999999***********9888877777663...333333333333333333.334444444333333333333344555555555556666666555 PP

>> TIGR03104  trio_amidotrans: asparagine synthase family amidotransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   0.2   8.2e-05      0.11     245     389 ..       9     171 ..       1     223 [. 0.60

  Alignments for each domain:
  == domain 1    score: 8.5 bits;  conditional E-value: 8.2e-05
   TIGR03104 245 vlealrlavkrrlvadvpvGvllsGGldssllvallaeagvedlkt............fsvGfedvgg....ekgdefeysdliaerfetrhhkllipeeevlea.lpeavaams..ePmvshdavafyllseevsk.evkvvqsGqGadevfaGyhwyPklaaa 389
                 + +++ +  +r ++ad +v  +lsGG+d+  ++a   e++v   ++             +v f ++      e + +  ++   a++++  hh ++++  +++e+ lp++v+ +   + m  ++++      ++ s+   k    G Gade+++Gy++  k ++a
  MMETSP1137-20121227|3737_1   9 LCQSMSQIGARTNAAD-RV-LILSGGVDTCAILAAAMETNVAFAAAitvitsedspdxTNVAFAAAITvitsEDSPDRPFAAAAAAEHTLPHHIVFMTTGDLVERhLPACVNILKtfDGMTLRNSLVVAAAMQKASElGFKHAIVGDGADELLGGYSFMWKAKDA 171
                 4445444433333444.34.56888888887776655554432222000001111111344554443311114445556777777778888888888877777643888877654226777777766666666666525788999***********877666333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (360 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       117  (0.0285227); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.32u 0.13s 00:00:00.45 Elapsed: 00:00:00.48
# Mc/sec: 989.92
//
Query:       MMETSP1137-20121227|3738_1  [L=90]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (90 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        55  (0.0134081); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.15s 00:00:00.28 Elapsed: 00:00:00.28
# Mc/sec: 409.62
//
Query:       MMETSP1137-20121227|3739_1  [L=40]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (40 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                         5  (0.00121892); expected 82.0 (0.02)
Passed bias filter:                        5  (0.00121892); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.25
# Mc/sec: 211.18
//
Query:       MMETSP1137-20121227|3740_1  [L=291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.034   12.4   0.1      0.093   11.1   0.0    1.8  2  TIGR03853 matur_matur: probable metal-binding protein


Domain annotation for each model (and alignments):
>> TIGR03853  matur_matur: probable metal-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0      0.21   8.7e+02      24      41 ..      25      42 ..       8      52 .. 0.52
   2 ?   11.1   0.0   2.3e-05     0.093      38      67 ..      67      96 ..      28     104 .. 0.84

  Alignments for each domain:
  == domain 1    score: -1.7 bits;  conditional E-value: 0.21
   TIGR03853 24 keaieekFGeearFhtCs 41
                 ++ +  FG+ + + + s
  MMETSP1137-20121227|3740_1 25 SSTFSGMFGRGEIYDAKS 42
                445555555555554433 PP

  == domain 2    score: 11.1 bits;  conditional E-value: 2.3e-05
   TIGR03853 38 htCsaedldadeLiefLlkkgKfieseegl 67
                  C+ e l+a+e+++ L ++gK++e+ +  
  MMETSP1137-20121227|3740_1 67 ADCEREALEAEEIVRSLHARGKIAEATQLA 96
                56**********************998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (291 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       268  (0.065334); expected 82.0 (0.02)
Passed bias filter:                      116  (0.0282789); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.27u 0.14s 00:00:00.41 Elapsed: 00:00:00.40
# Mc/sec: 960.22
//
Query:       MMETSP1137-20121227|3741_1  [L=1374]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1374 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        98  (0.0238908); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.76u 0.12s 00:00:00.88 Elapsed: 00:00:01.33
# Mc/sec: 1363.56
//
Query:       MMETSP1137-20121227|3742_1  [L=265]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        1.1    8.3   7.7       0.15   11.2   1.7    2.3  3  TIGR03661 T1SS_VCA0849: type 1 secretion C-terminal target domain (VC_A0849 subclass)


Domain annotation for each model (and alignments):
>> TIGR03661  T1SS_VCA0849: type 1 secretion C-terminal target domain (VC_A0849 subclass)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   1.7   3.6e-05      0.15       1      32 [.      22      55 ..      22      80 .. 0.75
   2 ?   -3.0   0.0      0.93   3.8e+03      13      30 ..     115     131 ..     110     142 .. 0.56
   3 ?   -1.6   0.1      0.35   1.4e+03      72      72 ..     225     225 ..     178     253 .. 0.62

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 3.6e-05
   TIGR03661  1 DtItDFklge..gDklDLsdLLsgegassssldq 32
                D  tDF+++   +D+lDLs+LL +   +++++++
  MMETSP1137-20121227|3742_1 22 DSHTDFDVAVegSDQLDLSELLPEGLMGEQQIND 55
                5669****9999**********965555555554 PP

  == domain 2    score: -3.0 bits;  conditional E-value: 0.93
   TIGR03661  13 klDLsdLLsgegassssl 30 
                  lDLs L   +  +++ +
  MMETSP1137-20121227|3742_1 115 ELDLSTLTLNAA-QAHRI 131
                 467776633222.33444 PP

  == domain 3    score: -1.6 bits;  conditional E-value: 0.35
   TIGR03661  72 l 72 
                  
  MMETSP1137-20121227|3742_1 225 V 225
                 1 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (265 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       100  (0.0243784); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.23u 0.13s 00:00:00.36 Elapsed: 00:00:00.51
# Mc/sec: 685.83
//
Query:       MMETSP1137-20121227|3743_1  [L=345]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (345 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       136  (0.0331546); expected 82.0 (0.02)
Passed bias filter:                       98  (0.0238908); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.20s 00:00:00.47 Elapsed: 00:00:00.42
# Mc/sec: 1084.20
//
Query:       MMETSP1137-20121227|3744_1  [L=232]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (232 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        79  (0.0192589); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.13s 00:00:00.34 Elapsed: 00:00:00.34
# Mc/sec: 900.63
//
Query:       MMETSP1137-20121227|3745_1  [L=136]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (136 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        42  (0.0102389); expected 82.0 (0.02)
Passed bias filter:                       41  (0.00999512); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.16s 00:00:00.32 Elapsed: 00:00:00.30
# Mc/sec: 598.35
//
Query:       MMETSP1137-20121227|3746_1  [L=342]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (342 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        97  (0.023647); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.16s 00:00:00.44 Elapsed: 00:00:00.45
# Mc/sec: 1003.12
//
Query:       MMETSP1137-20121227|3747_1  [L=213]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (213 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        67  (0.0163335); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.16s 00:00:00.36 Elapsed: 00:00:00.28
# Mc/sec: 969.44
//
Query:       MMETSP1137-20121227|3748_1  [L=339]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.5e-08   30.2   0.0    2.7e-05   21.0   0.0    2.2  2  TIGR03466 HpnA: hopanoid-associated sugar epimerase
    1.1e-06   25.7   0.0    1.6e-06   25.2   0.0    1.1  1  TIGR01035 hemA: glutamyl-tRNA reductase
    0.00037   17.3   0.0    0.00056   16.7   0.0    1.2  1  TIGR02823 oxido_YhdH: putative quinone oxidoreductase, YhdH/YhfP family
    0.00044   17.8   0.0    0.00069   17.2   0.0    1.2  1  TIGR01829 AcAcCoA_reduct: acetoacetyl-CoA reductase
    0.00099   16.6   0.0     0.0015   16.0   0.0    1.3  1  TIGR01777 yfcH: TIGR01777 family protein
     0.0011   16.6   0.4     0.0017   15.9   0.1    1.5  2  TIGR01830 3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase
     0.0031   14.9   0.1     0.0048   14.3   0.1    1.3  1  TIGR00036 dapB: dihydrodipicolinate reductase
  ------ inclusion threshold ------
      0.015   12.4   0.0      0.085    9.9   0.0    2.0  2  TIGR01746 Thioester-redct: thioester reductase domain
      0.016   12.2   0.1      0.024   11.6   0.0    1.2  1  TIGR02685 pter_reduc_Leis: pteridine reductase
      0.024   11.7   0.1      0.053   10.6   0.1    1.5  1  TIGR01963 PHB_DH: 3-hydroxybutyrate dehydrogenase


Domain annotation for each model (and alignments):
>> TIGR03466  HpnA: hopanoid-associated sugar epimerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.0   0.0   6.7e-08   2.7e-05       2      69 ..      53     127 ..      52     135 .. 0.76
   2 !    7.0   0.0    0.0012       0.5      73     116 ..     154     197 ..     140     212 .. 0.87

  Alignments for each domain:
  == domain 1    score: 21.0 bits;  conditional E-value: 6.7e-08
   TIGR03466   2 kvlvtGatGFvGsavvrllleeGeevrvlvrktsdrrnlee.ldv...Eive...GdlkdeaslkkalkGcealf 69 
                 +v+vtGa+G  G+ vv++l+e+G++v + vr+++++++l++ l++   E+     G  + +a++++al+G +al+
  MMETSP1137-20121227|3748_1  53 QVVVTGASGRTGKLVVQKLTEKGHKVLAGVRSEAKAKELRDsLKApdlECPLidlGAANAAAQMATALRGADALM 127
                 689********************************9998642543111544311255566778888999988876 PP

  == domain 2    score: 7.0 bits;  conditional E-value: 0.0012
   TIGR03466  73 AdyrlwakdpeelykanvegtravleaAleagvervvytssvat 116
                 A+ ++w ++ ++  + ++eg    ++aA+eagv++vv  ss+a 
  MMETSP1137-20121227|3748_1 154 AKPSFWFEEGASPKQVDYEGCLLQINAAKEAGVKHVVLLSSMAG 197
                 67788999999999999************************985 PP

>> TIGR01035  hemA: glutamyl-tRNA reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.2   0.0   3.8e-09   1.6e-06     182     264 ..      53     145 ..      51     178 .. 0.83

  Alignments for each domain:
  == domain 1    score: 25.2 bits;  conditional E-value: 3.8e-09
   TIGR01035 182 kvlliGa.GemaeLvakhLkekgvkkvlilnRtyekaekLakeleeeavkle...........kleealaeadivissTgapepivskedleral 264
                 +v++ Ga G++++Lv+++L+ekg +kvl   R+ +ka++L + l++  ++             ++++al+ ad ++ +T+a+  i + + l  a+
  MMETSP1137-20121227|3748_1  53 QVVVTGAsGRTGKLVVQKLTEKG-HKVLAGVRSEAKAKELRDSLKAPDLECPlidlgaanaaaQMATALRGADALMICTSATPKI-KLSSLPGAI 145
                 588999879**************.*********************98888777789999**********************8665.555555555 PP

>> TIGR02823  oxido_YhdH: putative quinone oxidoreductase, YhdH/YhfP family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0   1.4e-06   0.00056     147     187 ..      52      92 ..      29      99 .. 0.81

  Alignments for each domain:
  == domain 1    score: 16.7 bits;  conditional E-value: 1.4e-06
   TIGR02823 147 gevlVtGAtGgVgslavalLsklGyevvavtgkkeeeeylk 187
                  +v+VtGA+G  g l v+ L++ G++v+a +  +++++ l+
  MMETSP1137-20121227|3748_1  52 FQVVVTGASGRTGKLVVQKLTEKGHKVLAGVRSEAKAKELR 92 
                 48***************************988887777665 PP

>> TIGR01829  AcAcCoA_reduct: acetoacetyl-CoA reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.0   1.7e-06   0.00069       4      65 ..      55     113 ..      53     126 .. 0.78

  Alignments for each domain:
  == domain 1    score: 17.2 bits;  conditional E-value: 1.7e-06
   TIGR01829   4 lvtGglgGiGtaickrlakdGykvvanvapneerakewlqekevegfdvavvkadvssfeea 65 
                 +vtG++g  G+ + ++l+++G+kv+a+v+  e++ake+ ++ ++ + +  ++  d+   ++a
  MMETSP1137-20121227|3748_1  55 VVTGASGRTGKLVVQKLTEKGHKVLAGVR-SEAKAKELRDSLKAPDLECPLI--DLGAANAA 113
                 69**************************9.5677889999988886665554..44444444 PP

>> TIGR01777  yfcH: TIGR01777 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0   3.7e-06    0.0015       1      39 [.      54      92 ..      54     123 .. 0.86

  Alignments for each domain:
  == domain 1    score: 16.0 bits;  conditional E-value: 3.7e-06
   TIGR01777  1 vlitGgtGliGralveelekkghevviltrskekekeek 39
                v++tG++G  G+ +v++l++kgh+v + +rs+ k+ke  
  MMETSP1137-20121227|3748_1 54 VVVTGASGRTGKLVVQKLTEKGHKVLAGVRSEAKAKELR 92
                79*****************************99766654 PP

>> TIGR01830  3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.1   4.2e-06    0.0017       1      52 [.      54     104 ..      54     126 .. 0.80
   2 ?   -3.8   0.0       4.4   1.8e+03      83     116 ..     183     216 ..     181     223 .. 0.72

  Alignments for each domain:
  == domain 1    score: 15.9 bits;  conditional E-value: 4.2e-06
   TIGR01830   1 alvtGasrgiGkaiakklakegakvviterskeekaeelaeelkeagvkaaa 52 
                 ++vtGas   Gk +++kl+++g+kv+   +++e+ka+el+++lk+   ++  
  MMETSP1137-20121227|3748_1  54 VVVTGASGRTGKLVVQKLTEKGHKVLAG-VRSEAKAKELRDSLKAPDLECPL 104
                 68***********************999.6688999*****99987555444 PP

  == domain 2    score: -3.8 bits;  conditional E-value: 4.4
   TIGR01830  83 nAGitrDklllrmkeedwdevikvnLkgvfnvtk 116
                 +AG+++  ll  m  +d ++ ++v ++ +    +
  MMETSP1137-20121227|3748_1 183 EAGVKHVVLLSSMAGTDPQHFLNVSMENIVLWKR 216
                 5888888888888888888888887776655555 PP

>> TIGR00036  dapB: dihydrodipicolinate reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.1   1.2e-05    0.0048       2      41 ..      52      90 ..      51     128 .. 0.81

  Alignments for each domain:
  == domain 1    score: 14.3 bits;  conditional E-value: 1.2e-05
   TIGR00036  2 ikvavaGaaGrmGrevikavkeaedlelvaalerkgsskq 41
                 +v+v+Ga+Gr G+ v+++++e ++ ++ a +  +++ k 
  MMETSP1137-20121227|3748_1 52 FQVVVTGASGRTGKLVVQKLTE-KGHKVLAGVRSEAKAKE 90
                589*****************99.55566665555555554 PP

>> TIGR01746  Thioester-redct: thioester reductase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.0   0.00021     0.085       1      38 [.      53      88 ..      53     101 .. 0.83
   2 ?   -0.3   0.0      0.26     1e+02     227     263 ..     267     301 ..     256     306 .. 0.83

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 0.00021
   TIGR01746  1 tvlLTGAtGfLGaylleeLlrrsteakviClVRaksee 38
                +v++TGA+G  G+  +++L ++    kv++ VR++ ++
  MMETSP1137-20121227|3748_1 53 QVVVTGASGRTGKLVVQKLTEKG--HKVLAGVRSEAKA 88
                69********************7..78******87753 PP

  == domain 2    score: -0.3 bits;  conditional E-value: 0.26
   TIGR01746 227 eelteellpvdfvaraivalasqlaaeaggavfhvvn 263
                 +++ e ++p ++va+++v++ + ++a + g+ f vv+
  MMETSP1137-20121227|3748_1 267 RGADERMIPREDVATVLVQILTTPEA-R-GRSFDVVS 301
                 5677899*****************99.4.67777776 PP

>> TIGR02685  pter_reduc_Leis: pteridine reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   5.8e-05     0.024       4      48 ..      54      97 ..      52     125 .. 0.89

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 5.8e-05
   TIGR02685  4 alvtGaakriGrsiavklhqeGyrvvlhyrrsaeaasslaaelna 48
                 +vtGa+ r G+ + +kl ++G++v+    rs+++a++l + l a
  MMETSP1137-20121227|3748_1 54 VVVTGASGRTGKLVVQKLTEKGHKVLA-GVRSEAKAKELRDSLKA 97
                58*********************9865.5689999****999987 PP

>> TIGR01963  PHB_DH: 3-hydroxybutyrate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.1   0.00013     0.053       4      58 ..      54     108 ..      52     127 .. 0.80

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 0.00013
   TIGR01963   4 alvtGaasGiglaiakelaaaGakvvvndleeeaaeaaakeleeaggevlalkad 58 
                 ++vtGa++  g+ + ++l ++G+kv+    +e++a++++ +l++   e+  + + 
  MMETSP1137-20121227|3748_1  54 VVVTGASGRTGKLVVQKLTEKGHKVLAGVRSEAKAKELRDSLKAPDLECPLIDLG 108
                 79***********************999888999999999988877777655444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (339 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       186  (0.0453437); expected 82.0 (0.02)
Passed bias filter:                      178  (0.0433935); expected 82.0 (0.02)
Passed Vit filter:                        34  (0.00828864); expected 4.1 (0.001)
Passed Fwd filter:                        10  (0.00243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.35u 0.16s 00:00:00.51 Elapsed: 00:00:00.47
# Mc/sec: 952.01
//
Query:       MMETSP1137-20121227|3749_1  [L=386]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   1.5e-122  406.2   3.1   1.8e-122  406.0   2.2    1.0  1  TIGR03182 PDH_E1_alph_y: pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit
    1.1e-62  209.7   0.8    1.5e-62  209.3   0.5    1.0  1  TIGR03181 PDH_E1_alph_x: pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit
    3.9e-05   20.2   0.0    7.7e-05   19.2   0.0    1.4  1  TIGR00204 dxs: 1-deoxy-D-xylulose-5-phosphate synthase


Domain annotation for each model (and alignments):
>> TIGR03182  PDH_E1_alph_y: pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  406.0   2.2  1.3e-125  1.8e-122       2     315 .]      52     364 ..      51     364 .. 0.98

  Alignments for each domain:
  == domain 1    score: 406.0 bits;  conditional E-value: 1.3e-125
   TIGR03182   2 eellelyremlliRrfEekaaqlYkkgkigGfvHlyiGqEAvavgleaalkeddsvitsYRdHghalaagveakevmaEllgketGvskGkGGsmHlfdkekkflGGhgivgaqvplatGlafaekykkedevtlaffGdgavnqGqvyEslnlaalwklPvifviennkyamGtaverssaekdlakkgesfgikglevdGmdvlavreaakeavervragkgPvllelktyRfrgHslsDpa.kyRskeeveevk.krdpieklkkaliekgllseeelkeiekevkaeveeavefaeespepdveeLlkdvya 315
                 eel+++y++m ++Rr+E  ++ lYk + ++Gf+Hly GqEA++vg+ea ++++d ++tsYRdH + la+g ++++v+ Ellgk++G++kGkGGsmH+++++  f+GG+givgaq p+++Glafa+kyk++  v++a++Gdga+nqGq++E+ln+aalwklP+++v+enn+y+mGt+ +r sa+ d++++g  + ++g++vdGm+vl+vrea+k + ++v  ++gP+++e++tyR++gHs+sDp  +yR+++ev  v+ +rdp+e++k++ +e++l+s +e+kei++ vkaev+ ave a+++p p  +e+++d+y+
  MMETSP1137-20121227|3749_1  52 EELMSYYTDMFKMRRMEIAGDTLYKGKFVKGFCHLYDGQEAICVGIEAGCRKGDGLVTSYRDHCQQLARGDTVENVLKELLGKQGGCAKGKGGSMHMYKADAAFYGGNGIVGAQTPIGAGLAFAHKYKGDGGVAFALYGDGAANQGQLFEALNMAALWKLPLVYVCENNQYGMGTSKKRGSANDDYYTRG--HYVPGIKVDGMNVLSVREAVKFVRKYVV-ENGPMMMEMDTYRYHGHSMSDPGvTYRNRDEVAGVRaTRDPVERIKRYALETELVSAAEIKEIDAAVKAEVNAAVEAAKTAPLPVDDEMWTDIYT 364
                 7899******************************************************************************************************************************************************************************************..77*******************9999886.689*******************999***********9********************************************************95 PP

>> TIGR03181  PDH_E1_alph_x: pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  209.3   0.5   1.1e-65   1.5e-62      16     332 ..      44     368 ..      31     372 .. 0.91

  Alignments for each domain:
  == domain 1    score: 209.3 bits;  conditional E-value: 1.1e-65
   TIGR03181  16 elaaklseeelvelyremvltRrldekalalqRqGrl..gtyapllGqEAaqvgsalalrkeDvlvpsYRdaaallarGvkleeillywrgdekgsklp.........eevnilpinvpigtqvlhAaGvAlalklkgekevavayiGdGgtsegdfyealnfAavfkapvvfvvqNNqwAISvprskqtaaktlaqkavaagipgvqvDGnDvlAvyevvkealekArkgegPtLiEavtYRlgaHttaDdptrYrskeeee.ewkkkdPiarlrkyLeekglldeekeeeleeeaeeevkeaveeveelpkpkvedlfdnvYaelpk 332
                  +++++++eel++ y++m  +Rr++    +l + G+   g+     GqEA+ vg+++ +rk D lv+sYRd+ ++larG ++e++l+ + g++ g++           +++ +   n ++g+q++  aG+A+a k+kg+  va+a+ GdG++ +g + ealn+Aa++k+p+v+v++NNq+ + +++++ +a ++ ++++  + +pg++vDG+ vl v e+vk  +++   ++gP+++E+ tYR+  H+++D    Yr+++e+    +++dP++r+++y  e++l++ ++ +e+ +++++ev++ave+++++p p  +++ +++Y +++k
  MMETSP1137-20121227|3749_1  44 PMETTVTREELMSYYTDMFKMRRMEIAGDTLYK-GKFvkGFCHLYDGQEAICVGIEAGCRKGDGLVTSYRDHCQQLARGDTVENVLKELLGKQGGCAKGkggsmhmykADAAFYGGNGIVGAQTPIGAGLAFAHKYKGDGGVAFALYGDGAANQGQLFEALNMAALWKLPLVYVCENNQYGMGTSKKRGSANDDYYTRG--HYVPGIKVDGMNVLSVREAVKFVRKYVV-ENGPMMMEMDTYRYHGHSMSDPGVTYRNRDEVAgVRATRDPVERIKRYALETELVSAAEIKEIDAAVKAEVNAAVEAAKTAPLPVDDEMWTDIYTDQSK 368
                 56778999*****************99988876.776555666778***********************************9999999999888777663333444434566777788***************************************************************************999985..689*****************98777765.689******************************87778********************************************************98876 PP

>> TIGR00204  dxs: 1-deoxy-D-xylulose-5-phosphate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   0.0   5.6e-08   7.7e-05     118     174 ..     167     223 ..     145     239 .. 0.86

  Alignments for each domain:
  == domain 1    score: 19.2 bits;  conditional E-value: 5.6e-08
   TIGR00204 118 saglGiavaaelkgadekvvaviGdGaltaGmalealnhaGdlkkdllvilndnems 174
                  +g G+a a++ kg+     a+ GdGa   G  +ealn a   k +l+ + ++n+  
  MMETSP1137-20121227|3749_1 167 PIGAGLAFAHKYKGDGGVAFALYGDGAANQGQLFEALNMAALWKLPLVYVCENNQYG 223
                 57899******************************************9999888643 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (386 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       134  (0.032667); expected 82.0 (0.02)
Passed bias filter:                      104  (0.0253535); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.31u 0.15s 00:00:00.46 Elapsed: 00:00:00.46
# Mc/sec: 1107.56
//
Query:       MMETSP1137-20121227|3750_1  [L=249]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (249 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        91  (0.0221843); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.17s 00:00:00.39 Elapsed: 00:00:00.36
# Mc/sec: 912.92
//
Query:       MMETSP1137-20121227|3751_1  [L=282]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.6e-06   23.2   0.3    3.9e-06   22.7   0.0    1.4  2  TIGR04121 DEXH_lig_assoc: DEXH box helicase, DNA ligase-associated
    1.4e-05   21.4   0.0    2.2e-05   20.7   0.0    1.3  1  TIGR03817 DECH_helic: helicase/secretion neighborhood putative DEAH-box helicase
    0.00048   16.8   0.0    0.00082   16.1   0.0    1.3  1  TIGR00614 recQ_fam: ATP-dependent DNA helicase, RecQ family
    0.00049   16.5   0.0    0.00081   15.7   0.0    1.3  1  TIGR01389 recQ: ATP-dependent DNA helicase RecQ
  ------ inclusion threshold ------
       0.04    9.2   0.0      0.048    9.0   0.0    1.1  1  TIGR01054 rgy: reverse gyrase
      0.047   10.6   0.0      0.063   10.2   0.0    1.2  1  TIGR03158 cas3_cyano: CRISPR-associated helicase Cas3, subtype CYANO


Domain annotation for each model (and alignments):
>> TIGR04121  DEXH_lig_assoc: DEXH box helicase, DNA ligase-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0      0.37   2.5e+02     361     383 ..     161     183 ..     128     196 .. 0.66
   2 !   22.7   0.0   5.7e-09   3.9e-06      12      77 ..     212     280 ..     202     282 .] 0.82

  Alignments for each domain:
  == domain 1    score: -3.2 bits;  conditional E-value: 0.37
   TIGR04121 361 lEllEaaaareavkegeveerep 383
                  E+ Ea+a+r+a++ ++  ++ p
  MMETSP1137-20121227|3751_1 161 KEVAEANALRKALRIHAYGNDVP 183
                 38999999999988777655544 PP

  == domain 2    score: 22.7 bits;  conditional E-value: 5.7e-09
   TIGR04121  12 weprafQkevleaaeegesglliapTGaGKTlavflpsliela...akekpkkglkvlyitPLkaLakd 77 
                 +e+++ Q++++ a+ +g++ l  apTG+GKT a  +p +++l    + +    g + l + P + La++
  MMETSP1137-20121227|3751_1 212 HELTRVQMQAIPAMLNGREMLACAPTGSGKTAAFLIPLISRLSaasHGKGAPPGPRSLIVVPTQELARQ 280
                 467789**************************9999999999854434444489999999999999876 PP

>> TIGR03817  DECH_helic: helicase/secretion neighborhood putative DEAH-box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.7   0.0   3.3e-08   2.2e-05      23      95 ..     200     279 ..     187     282 .] 0.91

  Alignments for each domain:
  == domain 1    score: 20.7 bits;  conditional E-value: 3.3e-08
   TIGR03817  23 pdvvaaleaaGieapwqhqaraaelahaGehvvvatgtasGkslayllPvlsalaed.......pratalylaPtkalaa 95 
                 p + +++ +aG ++  + q++a  +  +G+++  ++ t sGk+ a+l+P++s+l+++       p+ ++l + Pt+ la+
  MMETSP1137-20121227|3751_1 200 PFLAKNILTAGYHELTRVQMQAIPAMLNGREMLACAPTGSGKTAAFLIPLISRLSAAshgkgapPGPRSLIVVPTQELAR 279
                 5567788899********************************************9998888888899*********9996 PP

>> TIGR00614  recQ_fam: ATP-dependent DNA helicase, RecQ family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0   1.2e-06   0.00082       8      47 ..     210     249 ..     205     254 .. 0.92

  Alignments for each domain:
  == domain 1    score: 16.1 bits;  conditional E-value: 1.2e-06
   TIGR00614   8 glesfrpvqlevinavlegrdalvvmatGgGksLCyqlpa 47 
                 g+++   vq+++i a+l+gr++l   +tG Gk   + +p 
  MMETSP1137-20121227|3751_1 210 GYHELTRVQMQAIPAMLNGREMLACAPTGSGKTAAFLIPL 249
                 899******************************9999885 PP

>> TIGR01389  recQ: ATP-dependent DNA helicase RecQ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   1.2e-06   0.00081       8      49 ..     208     249 ..     203     255 .. 0.90

  Alignments for each domain:
  == domain 1    score: 15.7 bits;  conditional E-value: 1.2e-06
   TIGR01389   8 vFGyeeFRggqeeiieevldgrdvlavlPtGGGkslCYqvPa 49 
                 + Gy+e  + q + i ++l+gr++la  PtG Gk   + +P 
  MMETSP1137-20121227|3751_1 208 TAGYHELTRVQMQAIPAMLNGREMLACAPTGSGKTAAFLIPL 249
                 46**********************************999995 PP

>> TIGR01054  rgy: reverse gyrase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   0.0     7e-05     0.048      92     139 ..     225     281 ..     197     282 .] 0.71

  Alignments for each domain:
  == domain 1    score: 9.0 bits;  conditional E-value: 7e-05
   TIGR01054  92 vlknksFaivaPtGvGktt.fgl.vmslflakk.gk......rvyiilPttlLvkqv 139
                 +l+++   + aPtG Gkt+ f + ++s   a+  gk      r++i++Pt+ L++q+
  MMETSP1137-20121227|3751_1 225 MLNGREMLACAPTGSGKTAaFLIpLISRLSAAShGKgappgpRSLIVVPTQELARQT 281
                 6677777889*******9535543344443332233334444*************98 PP

>> TIGR03158  cas3_cyano: CRISPR-associated helicase Cas3, subtype CYANO
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   9.3e-05     0.063      17      54 ..     231     280 ..     217     282 .] 0.76

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 9.3e-05
   TIGR03158  17 llntAptGaGKtlaalvevlseeldt............ialyPtNaLied 54 
                 +l  AptG+GKt a l++++s    +            + + Pt +L+++
  MMETSP1137-20121227|3751_1 231 MLACAPTGSGKTAAFLIPLISRLSAAshgkgappgprsLIVVPTQELARQ 280
                 6789***************9976544667777777777666777777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (282 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       147  (0.0358362); expected 82.0 (0.02)
Passed bias filter:                      107  (0.0260848); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.30u 0.17s 00:00:00.47 Elapsed: 00:00:00.30
# Mc/sec: 1240.70
//
Query:       MMETSP1137-20121227|3752_1  [L=146]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (146 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        76  (0.0185275); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.12s 00:00:00.28 Elapsed: 00:00:00.28
# Mc/sec: 664.50
//
Query:       MMETSP1137-20121227|3753_1  [L=115]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (115 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        45  (0.0109703); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.14s 00:00:00.29 Elapsed: 00:00:00.28
# Mc/sec: 523.41
//
Query:       MMETSP1137-20121227|3755_1  [L=55]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        17  (0.00414432); expected 82.0 (0.02)
Passed bias filter:                       17  (0.00414432); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.15s 00:00:00.26 Elapsed: 00:00:00.31
# Mc/sec: 234.17
//
Query:       MMETSP1137-20121227|3756_1  [L=321]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (321 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        73  (0.0177962); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.15s 00:00:00.40 Elapsed: 00:00:00.98
# Mc/sec: 432.33
//
Query:       MMETSP1137-20121227|3759_1  [L=614]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (614 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        73  (0.0177962); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.15s 00:00:00.51 Elapsed: 00:00:00.52
# Mc/sec: 1558.49
//
Query:       MMETSP1137-20121227|3760_1  [L=767]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.3e-18   62.9   0.0    1.3e-17   62.0   0.0    1.3  1  TIGR02349 DnaJ_bact: chaperone protein DnaJ
    3.2e-13   46.8   0.1    6.9e-13   45.7   0.1    1.4  1  TIGR03835 termin_org_DnaJ: terminal organelle assembly protein TopJ
  ------ inclusion threshold ------
       0.24    7.3   3.4       0.46    6.4   2.4    1.4  1  TIGR00993 3a0901s04IAP86: chloroplast protein import component Toc86/159, G and M domains


Domain annotation for each model (and alignments):
>> TIGR02349  DnaJ_bact: chaperone protein DnaJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.0   0.0   9.6e-21   1.3e-17       3      68 ..      95     159 ..      93     179 .. 0.94

  Alignments for each domain:
  == domain 1    score: 62.0 bits;  conditional E-value: 9.6e-21
   TIGR02349   3 YeiLgvskdAseeeikkAYrklakkyHPDrnkgekeaeekfkeineAyevLsdeekraqYDqfgha 68 
                 Y+iL v+  A+  eikk+Yrk+   yHPD+++  +e+ + f ++++A++vL+d+  r++Y+++g+ 
  MMETSP1137-20121227|3760_1  95 YKILQVEEGATPLEIKKSYRKMTLMYHPDKCQ-TPECADAFIKVTKAHDVLTDDATRENYEKYGNP 159
                 9*******************************.******************************975 PP

>> TIGR03835  termin_org_DnaJ: terminal organelle assembly protein TopJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.7   0.1     5e-16   6.9e-13       5      68 ..      95     158 ..      93     165 .. 0.95

  Alignments for each domain:
  == domain 1    score: 45.7 bits;  conditional E-value: 5e-16
   TIGR03835   5 yevLgidrDadeqeikkafrkLakkyhPDrnkaadaakifaeineandvLsnPkkraryDkyGh 68 
                 y +L+++  a   eikk++rk+   yhPD+ + ++ a+ f  +  a+dvL++   r++y+kyG 
  MMETSP1137-20121227|3760_1  95 YKILQVEEGATPLEIKKSYRKMTLMYHPDKCQTPECADAFIKVTKAHDVLTDDATRENYEKYGN 158
                 99*************************************************************6 PP

>> TIGR00993  3a0901s04IAP86: chloroplast protein import component Toc86/159, G and M domains
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   2.4   0.00034      0.46     440     479 ..     596     633 ..     590     638 .. 0.85

  Alignments for each domain:
  == domain 1    score: 6.4 bits;  conditional E-value: 0.00034
   TIGR00993 440 vkllqkkqlreelkrmkelkkrgkelgesedgyseeedee 479
                 +k+l+kk ++  +kr  elkk+++el e ed   eeedee
  MMETSP1137-20121227|3760_1 596 KKVLMKKTIK--KKRVEELKKTAAELAEDEDEEEEEEDEE 633
                 699****998..69****************8887777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (767 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       216  (0.0526572); expected 82.0 (0.02)
Passed bias filter:                       97  (0.023647); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.53u 0.16s 00:00:00.69 Elapsed: 00:00:00.65
# Mc/sec: 1557.47
//
Query:       MMETSP1137-20121227|3761_1  [L=66]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (66 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        32  (0.00780107); expected 82.0 (0.02)
Passed bias filter:                       30  (0.00731351); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.13s 00:00:00.25 Elapsed: 00:00:00.36
# Mc/sec: 241.98
//
Query:       MMETSP1137-20121227|3762_1  [L=771]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      1e-28   97.8   0.7      6e-28   95.3   0.0    1.9  2  TIGR02956 TMAO_torS: TMAO reductase sytem sensor TorS
    6.1e-14   49.6   0.1    1.9e-12   44.7   0.0    2.1  2  TIGR02966 phoR_proteo: phosphate regulon sensor kinase PhoR
    1.9e-12   44.4   0.0    1.9e-12   44.4   0.0    2.2  3  TIGR02916 PEP_his_kin: putative PEP-CTERM system histidine kinase
    2.3e-09   34.1   0.0    3.7e-09   33.5   0.0    1.3  1  TIGR02938 nifL_nitrog: nitrogen fixation negative regulator NifL
      1e-08   32.5   0.1    2.8e-08   31.0   0.0    1.7  2  TIGR01386 cztS_silS_copS: heavy metal sensor kinase
    1.4e-05   21.4   0.0    4.4e-05   19.8   0.0    1.8  2  TIGR03785 marine_sort_HK: proteobacterial dedicated sortase system histidine kinase


Domain annotation for each model (and alignments):
>> TIGR02956  TMAO_torS: TMAO reductase sytem sensor TorS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   1.0     0.081        55     423     481 ..     283     345 ..     269     357 .. 0.68
   2 !   95.3   0.0   8.8e-31     6e-28     512     692 ..     471     655 ..     458     666 .. 0.91

  Alignments for each domain:
  == domain 1    score: -0.6 bits;  conditional E-value: 0.081
   TIGR02956 423 esLeelvaqrT....qeLketnerLneEvlnHakAraeAeeAnrAKSaFLAtmSHEiRTPlnG 481
                 ++L  l++qr     qe ++t +  ++E  + +  r   e+  + + ++L +m H+  TP+  
  MMETSP1137-20121227|3762_1 283 KNLHTLLQQREqahrQEEAATRRAAESELRAREAERIAHEQDVQRRNKYLGAMCHDFGTPVAV 345
                 4455555554411114555565666777788888888889999999*************9865 PP

  == domain 2    score: 95.3 bits;  conditional E-value: 8.8e-31
   TIGR02956 512 LldiL.nDiLDySkiEaG.hlsiserafdlskLledvlhlmesraqekgiqLsleidedlpevlqgDlsrirQvliNlvgNaiKFTdrGsvvlrvslndds.llfeVeDtGvGiaeeeqetlFkaftqae.grkksgGTGLGLAiskrlveamdgelsveSelgkGScFafelplergkkaeksa 692
                 Lld+     L y k+EaG ++  s + f++ +L+e+v  + +   ++  ++ + +i   +p++ + D s +  vliNl +Na+K T+ Gsv+l+v  ++   l++eV DtG G++     +lF+aft a+    ++  TGLGL  sk+lv +++ge++   ++  G  F +e+p+e++  ++  a
  MMETSP1137-20121227|3762_1 471 LLDVTrHKALAYAKLEAGrEMVPSLKVFNVAELIEKVASVARDTGKSDRVEVRHHIAPGTPATAKSDASWLFMVLINLASNAMKHTQIGSVTLSVIPAGRGsLRVEVRDTGSGLPASFVPSLFQAFTSANtHNSSVESTGLGLYHSKQLVTILNGEIGYVPNEPTGCVFFIEVPIEEAPRNDANA 655
                 55554135799*******8899999*********************************************************************98877656****************************77778899**************************************997766555 PP

>> TIGR02966  phoR_proteo: phosphate regulon sensor kinase PhoR
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.1     0.016        11      99     141 ..     311     355 ..     267     366 .. 0.62
   2 !   44.7   0.0   2.8e-15   1.9e-12     172     329 ..     480     639 ..     458     643 .. 0.83

  Alignments for each domain:
  == domain 1    score: 2.7 bits;  conditional E-value: 0.016
   TIGR02966  99 lvarDvtklkrle..qmRrdFvanvsHELrtPLtvlkGyletlee 141
                 l ar   ++ + +  q R++++  + H+  tP++vlk  l +l+ 
  MMETSP1137-20121227|3762_1 311 LRAREAERIAHEQdvQRRNKYLGAMCHDFGTPVAVLKMLLSLLRG 355
                 44455544443331145889****************988887765 PP

  == domain 2    score: 44.7 bits;  conditional E-value: 2.8e-15
   TIGR02966 172 ltLsrlEsaakekee.ekvdvaelleelkkeaealseekehqielev..daavkvkgdeeeLrsalsNLveNAikytpeggeitvrweeeeeg.aelsvkDtGeGIaaehlprltERFYRvdksrsretgGtGLGLaIvkHvlerheaeLeieSelgkGstF 329
                 l+ ++lE+ ++   + + ++vael+e++++ a+ + ++ +++++ ++   + ++ k+d + L  +l NL +NA+k+t+ g ++t+++  + +g  +++v+DtG G++a+ +p l+  F   ++ +s+    tGLGL   k  ++  ++e+    ++ +G +F
  MMETSP1137-20121227|3762_1 480 LAYAKLEAGREMVPSlKVFNVAELIEKVASVARDTGKSDRVEVRHHIapGTPATAKSDASWLFMVLINLASNAMKHTQIG-SVTLSVIPAGRGsLRVEVRDTGSGLPASFVPSLFQAFTSANTHNSSV-ESTGLGLYHSKQLVTILNGEIGYVPNEPTGCVF 639
                 66789999877655416679***************99999***999943455667778889****************986.6788776666555*************************999998865.57*****99999998888888766666666666 PP

>> TIGR02916  PEP_his_kin: putative PEP-CTERM system histidine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.1      0.36   2.5e+02     347     411 ..       9      71 ..       6      75 .. 0.72
   2 ?   -3.1   1.3      0.65   4.4e+02       4      71 ..     117     184 ..     114     244 .. 0.65
   3 !   44.4   0.0   2.8e-15   1.9e-12     529     679 .]     483     644 ..     467     644 .. 0.80

  Alignments for each domain:
  == domain 1    score: -2.2 bits;  conditional E-value: 0.36
   TIGR02916 347 vkeklyraaarwnlalaeaaessdsallrflqeeeWiidleeaksepekysglvlpewlselpnv 411
                  +++ly++a  + ++      +++ +l  f qe++ +i+ ++ +    + +gl+ ++wl++l  v
  MMETSP1137-20121227|3762_1   9 HQQRLYQQA-DRAFEGGVPPSQEEGQLHAFAQEQDEVINSQQDN-MCGREAGLDFQQWLCSLTFV 71 
                 556666554.3445555556677788999**********66665.66777999******997655 PP

  == domain 2    score: -3.1 bits;  conditional E-value: 0.65
   TIGR02916   4 gaaAvaylvlslllvaawrkrlaggllllaaalsavwalasaalvllkka...lkllvlvlevlrdavwla 71 
                 g+ A+ +++++ l  ++wrk   g+ +l+a+ + a  a + ++ +  ++    + ++  ++++lr+ +++a
  MMETSP1137-20121227|3762_1 117 GLIAC-FVAFAKLAKLEWRKP--GTWILVACYVLARVAKEHLFSSPRSYIspaMLAMEYAMDILRPVMFTA 184
                 55566.888888888888874..677777888777777776666554444111444444888888777654 PP

  == domain 3    score: 44.4 bits;  conditional E-value: 2.8e-15
   TIGR02916 529 aqLrekgl.eeekkavdlvdllervieskraqkp..rievsvdkd....levradrerlervlghLvqNAleATeeeGkVkirverek.eaavieieDsGqGmseeFirerLFkPFdttKk.....aGmGiGvyesreyveelGGeieveStpgkGtiftlvlP 679
                 a+L  +++   + k++++++l+e+v   +r +++  r+ev  +++     +++ d + l  vl +L+ NA+  T+  G+V+++v   + +++++e+ D+G+G++ +F+   LF+ F ++ +        G+G+y s+++v  l Gei    ++  G +f + +P
  MMETSP1137-20121227|3762_1 483 AKLEAGREmVPSLKVFNVAELIEKVASVARDTGKsdRVEVRHHIApgtpATAKSDASWLFMVLINLASNAMKHTQI-GSVTLSVIPAGrGSLRVEVRDTGSGLPASFV-PSLFQAFTSANThnssvESTGLGLYHSKQLVTILNGEIGYVPNEPTGCVFFIEVP 644
                 56666666556678999******99887766655115555443334445789999******************975.******9988889*****************6.68*****9876532233568*******************9999999999988776 PP

>> TIGR02938  nifL_nitrog: nitrogen fixation negative regulator NifL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.5   0.0   5.3e-12   3.7e-09     342     493 ..     494     644 ..     448     645 .. 0.86

  Alignments for each domain:
  == domain 1    score: 33.5 bits;  conditional E-value: 5.3e-12
   TIGR02938 342 avvpvnlnqvlrdvitllterllaaGivvdwqPaavlPavlGsesrlrslfkalvdnaieamaqkqvkrrelsistaveddlirveiedsGPGiPadlrlkvfePffttka..ssrkhvGmGlavaqeivakhaGlidvdddyreGcrivvele 493
                 + +  n+ +++ +v  ++ +   +  + v    a+  Pa   s+     lf  l++ a +am++ q+    ls+  a ++ l rve+ d+G G+Pa ++   f+ f ++ +  ss +  G+Gl   +++v+  +G i   ++   Gc   +e++
  MMETSP1137-20121227|3762_1 494 SLKVFNVAELIEKVASVARDTGKSDRVEVRHHIAPGTPATAKSDA--SWLFMVLINLASNAMKHTQIGSVTLSVIPAGRGSL-RVEVRDTGSGLPASFVPSLFQAFTSANThnSSVESTGLGLYHSKQLVTILNGEIGYVPNEPTGCVFFIEVP 644
                 556678888888888888888888888888888888888766555..579999***********************999975.9**********************9876511568899********************9*******9999986 PP

>> TIGR01386  cztS_silS_copS: heavy metal sensor kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.1       0.4   2.8e+02     120     162 ..     293     335 ..     260     358 .. 0.48
   2 !   31.0   0.0     4e-11   2.8e-08     344     444 ..     530     630 ..     484     644 .. 0.80

  Alignments for each domain:
  == domain 1    score: -2.0 bits;  conditional E-value: 0.4
   TIGR01386 120 aakleksriilasvaallegkkrrvtilvaldikaekelldal 162
                 +++  ++++ ++++a ++ +  +  +i   +d + ++++l a+
  MMETSP1137-20121227|3762_1 293 EQAHRQEEAATRRAAESELRAREAERIAHEQDVQRRNKYLGAM 335
                 2222333333333333333333345555555555555555444 PP

  == domain 2    score: 31.0 bits;  conditional E-value: 4e-11
   TIGR01386 344 e.aevegdaqlfrRalsNLlsNAlrytpegstievrverradevevsventgkgipeeelsrlFdRFYRvdaarsnseegtGLGLaIvrsiveaHgGeveae 444
                   a++++da  +  +l NL sNA+++t  gs +   +   ++ ++v+v +tg+g+p+   + lF  F  ++   + s e+tGLGL   + +v +  Ge+   
  MMETSP1137-20121227|3762_1 530 TpATAKSDASWLFMVLINLASNAMKHTQIGSVTLSVIPAGRGSLRVEVRDTGSGLPASFVPSLFQAFTSANTH-NSSVESTGLGLYHSKQLVTILNGEIGYV 630
                 34889999999999*****************99888999999************************9766654.556777*****99999998888888655 PP

>> TIGR03785  marine_sort_HK: proteobacterial dedicated sortase system histidine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0      0.28   1.9e+02     492     511 ..     335     354 ..     324     361 .. 0.78
   2 !   19.8   0.0   6.4e-08   4.4e-05     556     703 .]     496     644 ..     474     644 .. 0.83

  Alignments for each domain:
  == domain 1    score: -2.2 bits;  conditional E-value: 0.28
   TIGR03785 492 LsHElrTPvAvVrsSLenLe 511
                 + H+  TPvAv +  L  L 
  MMETSP1137-20121227|3762_1 335 MCHDFGTPVAVLKMLLSLLR 354
                 469*********99888775 PP

  == domain 2    score: 19.8 bits;  conditional E-value: 6.4e-08
   TIGR03785 556 edfdlsevlselvqgYqqlyeeqrfelei...eeedlvlrgspellaQllDKlvdNaieFskedglIevslkekkkealltveNeGpplPedlkeklFdsmvSvRaqkaqeqpHLGlGLyIvrliadfHqgeikaeNraqedgvvfevslp 703
                 + f+++e++ ++ +  +++ ++ r+e+     + ++ +++  +  l  +l  l +Na+  ++ +++    + +   +  ++v+  G+ lP+    +lF+++ S  ++++   +  GlGLy ++ ++   +gei    + +++g vf +++p
  MMETSP1137-20121227|3762_1 496 KVFNVAELIEKVASVARDTGKSDRVEVRHhiaPGTPATAKSDASWLFMVLINLASNAMKHTQIGSVTLSVIPAGRGSLRVEVRDTGSGLPASFVPSLFQAFTSANTHNSSV-ESTGLGLYHSKQLVTILNGEIGYVPN-EPTGCVFFIEVP 644
                 56899999999999999999999999986112456679999999*****************998886556677778899*************************9655555.599*********99999999964332.335777777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (771 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       181  (0.0441248); expected 82.0 (0.02)
Passed bias filter:                      108  (0.0263286); expected 82.0 (0.02)
Passed Vit filter:                        19  (0.00463189); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.64u 0.17s 00:00:00.81 Elapsed: 00:00:00.69
# Mc/sec: 1474.83
//
Query:       MMETSP1137-20121227|3763_1  [L=973]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0041   12.7   0.2      0.015   10.8   0.0    1.8  2  TIGR04121 DEXH_lig_assoc: DEXH box helicase, DNA ligase-associated


Domain annotation for each model (and alignments):
>> TIGR04121  DEXH_lig_assoc: DEXH box helicase, DNA ligase-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0      0.02        82     142     184 ..     450     499 ..     447     526 .. 0.75
   2 !   10.8   0.0   3.7e-06     0.015     293     346 ..     733     791 ..     729     836 .. 0.74

  Alignments for each domain:
  == domain 1    score: -1.5 bits;  conditional E-value: 0.02
   TIGR04121 142 ravvvDElHeLlg......skRGdlleLa.LarLrrlapelrvvglsATv 184
                 +++++DE+H+L++      s R  ll+L  L  + r+a++   vg +AT 
  MMETSP1137-20121227|3763_1 450 KIILMDEVHNLISpsleiqSNRTRLLMLDrLKEMLRTAKNSVLVGFTATX 499
                 57899*****9753333327777777774366666777778888888885 PP

  == domain 2    score: 10.8 bits;  conditional E-value: 3.7e-06
   TIGR04121 293 kveaalkagklravvcTssL.dLGvDfgdvdlviqvGspkgvaRllQRiGRs....nHr 346
                  ve++l+ ++ r++v+ + +   Gv f  v  v+ v  p +++   QR+GR+    +H+
  MMETSP1137-20121227|3763_1 733 DVERNLRGEQSRIIVADAKFcSEGVSFFGVREVMLVDVPESASEWAQRAGRAvrfnGHA 791
                 79**************9986478****************************93333454 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (973 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       162  (0.0394929); expected 82.0 (0.02)
Passed bias filter:                       96  (0.0234032); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.66u 0.17s 00:00:00.83 Elapsed: 00:00:01.25
# Mc/sec: 1027.40
//
Query:       MMETSP1137-20121227|3764_1  [L=497]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (497 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       315  (0.0767918); expected 82.0 (0.02)
Passed bias filter:                      174  (0.0424183); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.19s 00:00:00.61 Elapsed: 00:00:00.54
# Mc/sec: 1214.79
//
Query:       MMETSP1137-20121227|3765_1  [L=123]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (123 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        50  (0.0121892); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.11s 00:00:00.25 Elapsed: 00:00:00.26
# Mc/sec: 624.41
//
Query:       MMETSP1137-20121227|3766_1  [L=210]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0029   14.5   0.0      0.005   13.7   0.0    1.4  1  TIGR00635 ruvB: Holliday junction DNA helicase RuvB
  ------ inclusion threshold ------
       0.01   12.5   0.0      0.012   12.3   0.0    1.3  1  TIGR02928 TIGR02928: orc1/cdc6 family replication initiation protein
      0.028   11.8   0.1      0.038   11.3   0.0    1.2  1  TIGR00157 TIGR00157: ribosome small subunit-dependent GTPase A
       0.05    9.9   0.2      0.093    9.0   0.0    1.4  2  TIGR00763 lon: ATP-dependent protease La


Domain annotation for each model (and alignments):
>> TIGR00635  ruvB: Holliday junction DNA helicase RuvB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   0.0   4.9e-06     0.005      31      58 ..       2      29 ..       1      37 [. 0.89

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 4.9e-06
   TIGR00635 31 dhvllyGPPGlGkttlakiiakelgvkl 58
                 hv+l+G PG+Gkt+  + +a+++++ +
  MMETSP1137-20121227|3766_1  2 RHVFLTGQPGVGKTSAVRGVASDVQAAI 29
                6*********************999887 PP

>> TIGR02928  TIGR02928: orc1/cdc6 family replication initiation protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   1.1e-05     0.012      42      71 ..       3      32 ..       1     114 [. 0.86

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 1.1e-05
   TIGR02928 42 nvliyGktGtGKtavtkkvlkeleeaaeek 71
                 v++ G++G+GKt++++ v   +++a+  +
  MMETSP1137-20121227|3766_1  3 HVFLTGQPGVGKTSAVRGVASDVQAAILAS 32
                69******************9999887554 PP

>> TIGR00157  TIGR00157: ribosome small subunit-dependent GTPase A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   3.7e-05     0.038     126     176 ..       5      55 ..       1      67 [. 0.87

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 3.7e-05
   TIGR00157 126 vfaGqSGVGKSSLiNlldpevkqkvkevseklklGkhTTtsvelfhlqgGl 176
                  ++Gq GVGK S +  + + v++++   s + +lG   T +v++   ++G+
  MMETSP1137-20121227|3766_1   5 FLTGQPGVGKTSAVRGVASDVQAAILASSLNASLGGFYTEEVRSAGERSGF 55 
                 679***********************9999999999999999887776665 PP

>> TIGR00763  lon: ATP-dependent protease La
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   0.0     9e-05     0.093     357     389 ..       5      41 ..       3      52 .. 0.71
   2 ?   -2.9   0.0      0.35   3.6e+02      70     110 ..     125     165 ..      99     183 .. 0.50

  Alignments for each domain:
  == domain 1    score: 9.0 bits;  conditional E-value: 9e-05
   TIGR00763 357 clvGPPGVGKtSlaksiAkalnr....kfvrlslGGl 389
                  l+G PGVGKtS  + +A+ ++       +  slGG 
  MMETSP1137-20121227|3766_1   5 FLTGQPGVGKTSAVRGVASDVQAailaSSLNASLGGF 41 
                 589*********9999997655400004456666775 PP

  == domain 2    score: -2.9 bits;  conditional E-value: 0.35
   TIGR00763  70 ilelvklkdekskketlkvvleglrrikikelvekeevlvv 110
                 +l++++ ++  +   tl ++  g++  ++++++++++vlv 
  MMETSP1137-20121227|3766_1 125 VLSILDDVHGPTVLGTLPILKPGRKISQVEQVSARKDVLVL 165
                 33333333334444444444444444444444444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (210 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       193  (0.0470502); expected 82.0 (0.02)
Passed bias filter:                      192  (0.0468064); expected 82.0 (0.02)
Passed Vit filter:                        45  (0.0109703); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.27u 0.18s 00:00:00.45 Elapsed: 00:00:00.41
# Mc/sec: 676.04
//
Query:       MMETSP1137-20121227|3768_1  [L=677]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.8e-19   67.0   0.0    2.9e-19   66.3   0.0    1.3  1  TIGR03903 TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
    3.9e-08   30.8   0.0    6.4e-08   30.1   0.0    1.2  1  TIGR03724 arch_bud32: Kae1-associated kinase Bud32
  ------ inclusion threshold ------
       0.04   10.3   0.0      0.061    9.7   0.0    1.1  1  TIGR01982 UbiB: 2-polyprenylphenol 6-hydroxylase


Domain annotation for each model (and alignments):
>> TIGR03903  TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.3   0.0   2.1e-22   2.9e-19       2     202 ..      26     212 ..      25     233 .. 0.82

  Alignments for each domain:
  == domain 1    score: 66.3 bits;  conditional E-value: 2.1e-22
   TIGR03903   2 tghkvaikllRedaaeeerlvaRFrReialCarLshPnivaLlDsGeaedgllFavFeyveGrtlrevLaadGaLpaaetgrLml.qvLDalaaahdaGvvhRDLkPqnimvsaadveshakvLDFGigaLlpgvedadeatltrttevlGsPaYaaPeqL.RgepvtaksDlYaWGLivleCLtGkrvvqGasvaevlykqL 202
                 tg+ vaik ++++    e  +    Re++   +LshPniv+L +    e+++l+ vFe+ +   l ++ +    L ++  +r m+ q+L ala  h++G  hRDLkP+n++vs     ++ k+ DFG++       ++        t+++ +  Y aPe L R     a  D +a G i+ e  t ++   G s a+ +yk  
  MMETSP1137-20121227|3768_1  26 TGEIVAIKRMKKKFYSWEECM--QLREVTSLRKLSHPNIVKLKEVI-RENDILYFVFEFLD-MNLYQLCKDRDKLFPESKVRNMTyQMLQALAYMHKHGFFHRDLKPENMLVSG----NTMKIADFGLAR------EIRS--KPPYTDYVSTRWYRAPEVLlRAPQYNAPIDTWAIGTIMSEMFTLRPLFPGTSEADEIYKIC 212
                 788899999998866443333..25999999**********97655.5666********98.678999999999999999988866**************************95....4679*****963......4322..3457899**********752777778999***********************999999865 PP

>> TIGR03724  arch_bud32: Kae1-associated kinase Bud32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.1   0.0   4.7e-11   6.4e-08      92     138 ..     102     148 ..      82     156 .. 0.87

  Alignments for each domain:
  == domain 1    score: 30.1 bits;  conditional E-value: 4.7e-11
   TIGR03724  92 elellkevGelvgklHkagivhgDlttsNiivkddklyliDfGLgkk 138
                   ++++++ ++++ +Hk+g+ h Dl ++N++v+++++ + DfGL++ 
  MMETSP1137-20121227|3768_1 102 VRNMTYQMLQALAYMHKHGFFHRDLKPENMLVSGNTMKIADFGLARE 148
                 3388899999**********************************986 PP

>> TIGR01982  UbiB: 2-polyprenylphenol 6-hydroxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.0   4.4e-05     0.061     270     307 ..     114     150 ..      99     156 .. 0.79

  Alignments for each domain:
  == domain 1    score: 9.7 bits;  conditional E-value: 4.4e-05
   TIGR01982 270 kqvlrdgfFHaDlHpGNilvakdgkiialDfGivgrls 307
                 + + ++gfFH Dl p N+lv+ + ++ + DfG+  ++ 
  MMETSP1137-20121227|3768_1 114 AYMHKHGFFHRDLKPENMLVSGN-TMKIADFGLAREIR 150
                 556799**************865.56777**9977665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (677 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       106  (0.0258411); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.47u 0.17s 00:00:00.64 Elapsed: 00:00:00.41
# Mc/sec: 2179.43
//
Query:       MMETSP1137-20121227|3769_1  [L=315]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (315 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       108  (0.0263286); expected 82.0 (0.02)
Passed bias filter:                      102  (0.0248659); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.13s 00:00:00.39 Elapsed: 00:00:00.39
# Mc/sec: 1066.07
//
Query:       MMETSP1137-20121227|3770_1  [L=342]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (342 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        61  (0.0148708); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.21s 00:00:00.43 Elapsed: 00:00:00.62
# Mc/sec: 728.07
//
Query:       MMETSP1137-20121227|3771_1  [L=184]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (184 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        50  (0.0121892); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.14s 00:00:00.31 Elapsed: 00:00:00.44
# Mc/sec: 551.95
//
Query:       MMETSP1137-20121227|3772_1  [L=119]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (119 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        59  (0.0143832); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.17s 00:00:00.32 Elapsed: 00:00:00.38
# Mc/sec: 413.33
//
Query:       MMETSP1137-20121227|3773_1  [L=396]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.7e-14   49.8   0.1    1.7e-13   47.2   0.0    1.9  2  TIGR03903 TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
      4e-07   27.5   0.0      6e-07   27.0   0.0    1.2  1  TIGR03724 arch_bud32: Kae1-associated kinase Bud32


Domain annotation for each model (and alignments):
>> TIGR03903  TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.2   0.0   8.2e-17   1.7e-13      57     206 ..     115     252 ..      73     286 .. 0.88
   2 !    0.8   0.0    0.0084        17     855     902 ..     265     312 ..     261     315 .. 0.92

  Alignments for each domain:
  == domain 1    score: 47.2 bits;  conditional E-value: 8.2e-17
   TIGR03903  57 vFeyveGrtlrevLaadGaLpaaetgrLmlqvLDalaaahdaGvvhRDLkPqnimvsaadveshakvLDFGigaLlpgvedadeatltrttevlGsPaYaaPeqLRgepvtaksDlYaWGLivleCLtGkrvvqGasvaevlykqLsPvd 206
                   +y +G  l+ +L  +Ga  a+      +    al   h++Gv+hRD+k +n+ +     +  a ++D G +   +   d       r+t +lG+P+  aPe   ge      Dl+a G+++ eCL   +   G++  ev+   L  ++
  MMETSP1137-20121227|3773_1 115 LLDYLPGGSLATLLERNGAFGAHAARYYTACCALALEGLHERGVMHRDVKTENVCIDS---DGFAILIDLGFARSFT---D------GRATTLLGTPEMIAPEIFLGEGHSFPVDLWALGVVLYECLMDATPFFGETPDEVYDSALRSQP 252
                 5689*******************99999999999********************9955...5579******875444...3......566889***********************************************9988886654 PP

  == domain 2    score: 0.8 bits;  conditional E-value: 0.0084
   TIGR03903 855 hervaaallarvprvaaarpalladhfaradafadavdagleaarral 902
                  +r+ + llar p+++ + +a l + f  a+a+ +a++  ++a+r+ l
  MMETSP1137-20121227|3773_1 265 AKRLVTSLLARCPEARPSPTAVLEHDFFDAGAYPNALALXVKALRQRL 312
                 5788999************************************99865 PP

>> TIGR03724  arch_bud32: Kae1-associated kinase Bud32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.0   0.0   2.9e-10     6e-07      65     138 ..     105     186 ..      66     194 .. 0.79

  Alignments for each domain:
  == domain 1    score: 27.0 bits;  conditional E-value: 2.9e-10
   TIGR03724  65 ydvdpeekkivmeyiegkklkdlleekel.......ellkevGelvgklHkagivhgDlttsNiiv.kddklyliDfGLgkk 138
                 y ++++ ++i+++y+ g  l +lle++          ++   + ++  lH+ g++h D+ t+N+ + +d+ ++liD+G ++ 
  MMETSP1137-20121227|3773_1 105 YVIQNSVTSILLDYLPGGSLATLLERNGAfgahaarYYTACCALALEGLHERGVMHRDVKTENVCIdSDGFAILIDLGFARS 186
                 667888899*****************9889998875555566778899******************44566799****9975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (396 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        55  (0.0134081); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.32u 0.22s 00:00:00.54 Elapsed: 00:00:00.42
# Mc/sec: 1244.47
//
Query:       MMETSP1137-20121227|3774_1  [L=2794]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (2794 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       101  (0.0246221); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                        20  (0.00487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 1.55u 0.17s 00:00:01.72 Elapsed: 00:00:01.04
# Mc/sec: 3545.94
//
Query:       MMETSP1137-20121227|3775_1  [L=144]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (144 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        66  (0.0160897); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.17s 00:00:00.33 Elapsed: 00:00:00.43
# Mc/sec: 442.01
//
Query:       MMETSP1137-20121227|3776_1  [L=156]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.039   11.7   0.0      0.055   11.2   0.0    1.2  1  TIGR03667 Rv3369: PPOX class probable F420-dependent enzyme, Rv3369 family


Domain annotation for each model (and alignments):
>> TIGR03667  Rv3369: PPOX class probable F420-dependent enzyme, Rv3369 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   1.3e-05     0.055      46      90 ..       9      55 ..       3      68 .. 0.70

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 1.3e-05
   TIGR03667 46 srPeaaklrnirrnPrvslnlns..derggdvvvltGtaevvedaas 90
                s P+++ lr ir  P   l+++s  d  g  +   +G   +++d+a 
  MMETSP1137-20121227|3776_1  9 SDPSSTALRAIRGRPETKLHFDSpwDDAGPIIHDEEGASLMAHDHAA 55
                99********************9433444444445555555444433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (156 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        55  (0.0134081); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.18u 0.15s 00:00:00.32 Elapsed: 00:00:00.25
# Mc/sec: 823.61
//
Query:       MMETSP1137-20121227|3781_1  [L=215]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.8e-53  178.7   0.0    3.2e-53  178.6   0.0    1.0  1  TIGR01408 Ube1: ubiquitin-activating enzyme E1
    2.3e-11   41.3   0.0    3.4e-11   40.8   0.0    1.2  1  TIGR02356 adenyl_thiF: thiazole biosynthesis adenylyltransferase ThiF
    7.3e-07   26.6   0.1    9.4e-07   26.3   0.0    1.1  1  TIGR02355 moeB: molybdopterin synthase sulfurylase MoeB
    1.1e-06   26.5   0.1    2.4e-06   25.4   0.0    1.5  1  TIGR02354 thiF_fam2: thiamine biosynthesis protein ThiF


Domain annotation for each model (and alignments):
>> TIGR01408  Ube1: ubiquitin-activating enzyme E1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  178.6   0.0   3.1e-56   3.2e-53       1     170 [.      41     212 ..      41     215 .] 0.98

  Alignments for each domain:
  == domain 1    score: 178.6 bits;  conditional E-value: 3.1e-56
   TIGR01408   1 eidealysrqlyvlGdeamkklaksnvlisGmkGlGveiaknlvlaGvksvtlhdeekvelwdlssnfflseddvg..knraeasvkklaelnqyvvvssvskslnkeflkkfqvvvlteislekqleindfcrsqqppiafikadvrGlfgsvfcdfGeefavldtdGeeP 170
                 +ide+l srq++v+G+e+m++l  ++vli+G++GlG+e+akn+vla v svtlhd + + + d +s+f+ls dd +   nra a   +++eln+ v v +++ ++  + l+++ vvv   + l  ++ei+  cr    piafi++dvrGl gsvf d+G+ f+ ld  Ge  
  MMETSP1137-20121227|3781_1  41 TIDEDLQSRQMAVYGRESMQRLRSAHVLITGINGLGAELAKNIVLANVGSVTLHDMHGATVRDCGSHFYLSMDDAAkgTNRAAACAAQIQELNPGVAVKVLDGPFPVDRLQEWTVVVAVGMPLAEAIEIDQICRTASNPIAFIRTDVRGLCGSVFVDLGPSFTTLDPSGESV 212
                 69************************************************************************98668******************************************************************************************975 PP

>> TIGR02356  adenyl_thiF: thiazole biosynthesis adenylyltransferase ThiF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.8   0.0   3.3e-14   3.4e-11       8     151 ..      51     194 ..      47     213 .. 0.81

  Alignments for each domain:
  == domain 1    score: 40.8 bits;  conditional E-value: 3.3e-14
   TIGR02356   8 lkeigeegqqklleskvliiGaGgLgsavaeylaaaGvgtiaivDdDevdlsNlqrqilfaeedvk..rpKveaaaerlkelnseirvealkeevtaenleelieqvdlvlDctDnfktrylindaceaagkP..lisaavvgfeGqv 151
                 ++ +g e  q+l++++vli G+ gLg++ a+ ++ a vg +++ D+    +    +    + +d+   +++++a a +++eln+ + v++l+     ++l+    +  +v+     ++    i+++c +a+ P  +i + v g+ G+v
  MMETSP1137-20121227|3781_1  51 MAVYGRESMQRLRSAHVLITGINGLGAELAKNIVLANVGSVTLHDMHGATVRDCGSHFYLSMDDAAkgTNRAAACAAQIQELNPGVAVKVLDGPFPVDRLQ----EWTVVVAVGMPLAEAIEIDQICRTASNPiaFIRTDVRGLCGSV 194
                 45689************************************************99998888888765699*******************998777666555....4556666666777778888888888888334556666666655 PP

>> TIGR02355  moeB: molybdopterin synthase sulfurylase MoeB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.3   0.0   9.2e-10   9.4e-07      17     112 ..      57     154 ..      42     187 .. 0.75

  Alignments for each domain:
  == domain 1    score: 26.3 bits;  conditional E-value: 9.2e-10
   TIGR02355  17 dGqeklkaskvlivGlGGlGcaasqylaaaGvGrltlvdfd..tvelsnlqrqvlhsdanigqpkvesakdaleelnphieietinaklddeelaali 112
                 +  ++l++++vli G+ GlG   ++ +  a vG +tl d+   tv        +   da  g+++  + +++++elnp ++++ ++     ++l++  
  MMETSP1137-20121227|3781_1  57 ESMQRLRSAHVLITGINGLGAELAKNIVLANVGSVTLHDMHgaTVRDCGSHFYLSMDDAAKGTNRAAACAAQIQELNPGVAVKVLDGPFPVDRLQEWT 154
                 33457999*******************************9722444445555566779999*********************9888776666665544 PP

>> TIGR02354  thiF_fam2: thiamine biosynthesis protein ThiF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.4   0.0   2.3e-09   2.4e-06       3      97 ..      46     143 ..      41     159 .. 0.86

  Alignments for each domain:
  == domain 1    score: 25.4 bits;  conditional E-value: 2.3e-09
   TIGR02354   3 leaalvarhtekvveklkkasvaiaGlGGlGsnvainlaraGigklilvdfdvvepsnlnrqqykvsd...vGkkktealkeqiseinPyveieiide 97 
                 l+   +a  + + +++l+ a+v i+G+ GlG+++a n+  a +g + l d     + +     y   d    G++++ a   qi+e+nP v ++++d 
  MMETSP1137-20121227|3781_1  46 LQSRQMAVYGRESMQRLRSAHVLITGINGLGAELAKNIVLANVGSVTLHDMHGATVRDCGSHFYLSMDdaaKGTNRAAACAAQIQELNPGVAVKVLDG 143
                 55555666788999******************************************99999999764422268999***************9999885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (215 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       140  (0.0341297); expected 82.0 (0.02)
Passed bias filter:                       96  (0.0234032); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.25u 0.15s 00:00:00.40 Elapsed: 00:00:00.34
# Mc/sec: 834.64
//
Query:       MMETSP1137-20121227|3782_1  [L=357]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      8e-15   52.9   0.1      1e-14   52.5   0.1    1.1  1  TIGR02349 DnaJ_bact: chaperone protein DnaJ
      2e-07   27.6   0.1    2.4e-07   27.3   0.1    1.1  1  TIGR03835 termin_org_DnaJ: terminal organelle assembly protein TopJ


Domain annotation for each model (and alignments):
>> TIGR02349  DnaJ_bact: chaperone protein DnaJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.5   0.1   5.1e-18     1e-14       3      76 ..      86     158 ..      84     221 .. 0.77

  Alignments for each domain:
  == domain 1    score: 52.5 bits;  conditional E-value: 5.1e-18
   TIGR02349   3 YeiLgvskdAseeeikkAYrklakkyHPDrnkgekeaeekfkeineAyevLsdeekraqYDqfghagleggagg 76 
                 Y++Lgvs  As +ei+ AYr +a++ HPD++k e++a e+f++  +A+++L+ +++ra+ D    +++ ++ + 
  MMETSP1137-20121227|3782_1  86 YSVLGVSPRASPSEIRIAYRAKARTLHPDVCK-EADAPERFRQLVRAFKMLTXSKQRAAVDSANAKRAAAERAA 158
                 9*******************************.****************************9766555544332 PP

>> TIGR03835  termin_org_DnaJ: terminal organelle assembly protein TopJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.3   0.1   1.2e-10   2.4e-07       5      65 ..      86     146 ..      83     201 .. 0.88

  Alignments for each domain:
  == domain 1    score: 27.3 bits;  conditional E-value: 1.2e-10
   TIGR03835   5 yevLgidrDadeqeikkafrkLakkyhPDrnkaadaakifaeineandvLsnPkkraryDk 65 
                 y vLg+++ a  +ei+ a+r  a+  hPD  k+ada + f+ +  a+ +L+  k+ra  D 
  MMETSP1137-20121227|3782_1  86 YSVLGVSPRASPSEIRIAYRAKARTLHPDVCKEADAPERFRQLVRAFKMLTXSKQRAAVDS 146
                 99******************************************************99885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (357 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       139  (0.0338859); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.28u 0.13s 00:00:00.41 Elapsed: 00:00:00.50
# Mc/sec: 942.40
//
Query:       MMETSP1137-20121227|3783_1  [L=534]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (534 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        97  (0.023647); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.14s 00:00:00.49 Elapsed: 00:00:00.49
# Mc/sec: 1438.41
//
Query:       MMETSP1137-20121227|3784_1  [L=154]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (154 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        59  (0.0143832); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.15s 00:00:00.32 Elapsed: 00:00:00.42
# Mc/sec: 483.96
//
Query:       MMETSP1137-20121227|3785_1  [L=570]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (570 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        79  (0.0192589); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.16s 00:00:00.54 Elapsed: 00:00:00.48
# Mc/sec: 1567.37
//
Query:       MMETSP1137-20121227|3786_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        24  (0.0058508); expected 82.0 (0.02)
Passed bias filter:                       24  (0.0058508); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.14s 00:00:00.26 Elapsed: 00:00:00.27
# Mc/sec: 259.09
//
Query:       MMETSP1137-20121227|3787_1  [L=78]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00034   17.0   0.0    0.00038   16.9   0.0    1.0  1  TIGR00471 pheT_arch: phenylalanine--tRNA ligase, beta subunit


Domain annotation for each model (and alignments):
>> TIGR00471  pheT_arch: phenylalanine--tRNA ligase, beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.0   9.2e-08   0.00038     527     551 .]       2      26 ..       1      26 [. 0.95

  Alignments for each domain:
  == domain 1    score: 16.9 bits;  conditional E-value: 9.2e-08
   TIGR00471 527 hPevltnFelefpvsalEveievll 551
                 hPevl nFelefp sa +++++ +l
  MMETSP1137-20121227|3787_1   2 HPEVLANFELEFPTSAADIDLQYFL 26 
                 9********************9886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (78 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        25  (0.00609459); expected 82.0 (0.02)
Passed bias filter:                       24  (0.0058508); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.13u 0.13s 00:00:00.26 Elapsed: 00:00:00.33
# Mc/sec: 311.97
//
Query:       MMETSP1137-20121227|3788_1  [L=87]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0042   14.3   0.0     0.0049   14.1   0.0    1.0  1  TIGR03381 agmatine_aguB: N-carbamoylputrescine amidase


Domain annotation for each model (and alignments):
>> TIGR03381  agmatine_aguB: N-carbamoylputrescine amidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.0   1.2e-06    0.0049     223     277 ..       6      62 ..       1      63 [. 0.86

  Alignments for each domain:
  == domain 1    score: 14.1 bits;  conditional E-value: 1.2e-06
   TIGR03381 223 tfyGssfiadetGelvaeadr..seeavlvaefdldeiakeraawGlfrdrrpelye 277
                 + +G++   d +Ge va++++  + +++ + e+dld +a++r+++ +   rr ++y 
  MMETSP1137-20121227|3788_1   6 RSWGHAVAFDPWGERVASFEDgaEGNGIAIFEIDLDLVARTRQNMPMKLHRRYDIYG 62 
                 568999999********9976225678999*************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (87 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        32  (0.00780107); expected 82.0 (0.02)
Passed bias filter:                       32  (0.00780107); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.14u 0.18s 00:00:00.32 Elapsed: 00:00:00.30
# Mc/sec: 382.77
//
Query:       MMETSP1137-20121227|3789_1  [L=33]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (33 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        24  (0.0058508); expected 82.0 (0.02)
Passed bias filter:                       24  (0.0058508); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.15s 00:00:00.24 Elapsed: 00:00:00.52
# Mc/sec: 83.76
//
Query:       MMETSP1137-20121227|3790_1  [L=278]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (278 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.15s 00:00:00.37 Elapsed: 00:00:00.38
# Mc/sec: 965.60
//
Query:       MMETSP1137-20121227|3791_1  [L=111]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (111 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       163  (0.0397367); expected 82.0 (0.02)
Passed bias filter:                      130  (0.0316919); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.11s 00:00:00.27 Elapsed: 00:00:00.50
# Mc/sec: 293.02
//
Query:       MMETSP1137-20121227|3794_1  [L=138]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.015   13.5   0.0       0.59    8.4   0.0    2.3  2  TIGR03655 anti_R_Lar: restriction alleviation protein, Lar family


Domain annotation for each model (and alignments):
>> TIGR03655  anti_R_Lar: restriction alleviation protein, Lar family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   0.0   0.00014      0.59       1      37 [.      18      54 ..      18      66 .. 0.70
   2 ?    2.9   0.0    0.0072        30       3      12 ..      70      79 ..      68      95 .. 0.80

  Alignments for each domain:
  == domain 1    score: 8.4 bits;  conditional E-value: 0.00014
   TIGR03655  1 lkpCPFCGgadvslregeddldeveiv.aveCktCgas 37
                l +CP CG ++  l e  +++++ + + ++  ++ +as
  MMETSP1137-20121227|3794_1 18 LLRCPSCGLQQP-LTEHRQPRQRNRTYrRIDPSSNEAS 54
                689*****9998.7777777776666646665555555 PP

  == domain 2    score: 2.9 bits;  conditional E-value: 0.0072
   TIGR03655  3 pCPFCGgadv 12
                +C FCG   +
  MMETSP1137-20121227|3794_1 70 NCSFCGTPML 79
                799***8765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (138 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        89  (0.0216967); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.15u 0.16s 00:00:00.31 Elapsed: 00:00:00.27
# Mc/sec: 674.61
//
Query:       MMETSP1137-20121227|3795_1  [L=269]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (269 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        91  (0.0221843); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.15s 00:00:00.36 Elapsed: 00:00:00.34
# Mc/sec: 1044.27
//
Query:       MMETSP1137-20121227|3796_1  [L=423]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.1e-07   25.7   0.0    7.1e-07   25.2   0.0    1.1  1  TIGR03903 TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
    1.2e-05   22.7   0.0    1.9e-05   22.1   0.0    1.2  1  TIGR03724 arch_bud32: Kae1-associated kinase Bud32


Domain annotation for each model (and alignments):
>> TIGR03903  TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.2   0.0   3.4e-10   7.1e-07      84     129 ..     179     224 ..     170     255 .. 0.91

  Alignments for each domain:
  == domain 1    score: 25.2 bits;  conditional E-value: 3.4e-10
   TIGR03903  84 LmlqvLDalaaahdaGvvhRDLkPqnimvsaadveshakvLDFGig 129
                 +  q  +ala  h+ Gv hRD+k +n m+ +  +    k++DFG++
  MMETSP1137-20121227|3796_1 179 VFKQLSEALAYCHKMGVAHRDIKLENTMIHQGPEGVRIKLIDFGLA 224
                 5678999*************************************96 PP

>> TIGR03724  arch_bud32: Kae1-associated kinase Bud32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.1   0.0   9.2e-09   1.9e-05      93     137 ..     177     225 ..     169     227 .. 0.86

  Alignments for each domain:
  == domain 1    score: 22.1 bits;  conditional E-value: 9.2e-09
   TIGR03724  93 lellkevGelvgklHkagivhgDlttsNiivk....ddklyliDfGLgk 137
                  +++k++ e+++ +Hk g++h D+  +N +++    + ++ liDfGL+ 
  MMETSP1137-20121227|3796_1 177 RDVFKQLSEALAYCHKMGVAHRDIKLENTMIHqgpeGVRIKLIDFGLAM 225
                 4899**************************9755557799*******95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (423 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        91  (0.0221843); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.31u 0.16s 00:00:00.47 Elapsed: 00:00:00.42
# Mc/sec: 1329.32
//
Query:       MMETSP1137-20121227|3797_1  [L=166]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (166 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        67  (0.0163335); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.17s 00:00:00.36 Elapsed: 00:00:00.31
# Mc/sec: 706.78
//
Query:       MMETSP1137-20121227|3799_1  [L=128]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (128 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       132  (0.0321794); expected 82.0 (0.02)
Passed bias filter:                       96  (0.0234032); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.17s 00:00:00.34 Elapsed: 00:00:00.38
# Mc/sec: 444.59
//
Query:       MMETSP1137-20121227|3800_1  [L=161]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (161 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        66  (0.0160897); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.17s 00:00:00.32 Elapsed: 00:00:00.30
# Mc/sec: 708.34
//
Query:       MMETSP1137-20121227|3801_1  [L=294]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0018   15.0   0.2     0.0051   13.5   0.0    1.8  2  TIGR02928 TIGR02928: orc1/cdc6 family replication initiation protein
  ------ inclusion threshold ------
      0.036   11.6   0.0      0.057   10.9   0.0    1.3  1  TIGR00455 apsK: adenylylsulfate kinase


Domain annotation for each model (and alignments):
>> TIGR02928  TIGR02928: orc1/cdc6 family replication initiation protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.3      0.13   2.7e+02     238     286 ..       4      52 ..       3      61 .. 0.60
   2 !   13.5   0.0   2.5e-06    0.0051      28      69 ..     103     144 ..      78     154 .. 0.87

  Alignments for each domain:
  == domain 1    score: -2.0 bits;  conditional E-value: 0.13
   TIGR02928 238 hGdaRkAidlLreageiAeeegsekvt..eehvekAqekiekerllelirg 286
                 +G++R A +l r a  iA+e+++e     +e++ +  ++ie +++le++++
  MMETSP1137-20121227|3801_1   4 EGELRSA-RLNRLAHAIARERQREAAMsmTEDLSQ-LDSIEADIVLETLKN 52 
                 5777776.677778888877776654300333333.356677777777665 PP

  == domain 2    score: 13.5 bits;  conditional E-value: 2.5e-06
   TIGR02928  28 akalkpilrgsrpsnvliyGktGtGKtavtkkvlkeleeaae 69 
                 a+a ++++++ + + ++i+G++G GKt ++ ++l+ l+  ++
  MMETSP1137-20121227|3801_1 103 AAAHRSMISDGTNQALIISGESGAGKTETASFLLQYLRFVTN 144
                 56778999**************************99986665 PP

>> TIGR00455  apsK: adenylylsulfate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   2.8e-05     0.057      17     112 ..     114     210 ..      99     224 .. 0.83

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 2.8e-05
   TIGR00455  17 ksvvlWltGlsgsGkstianalekkLeekglrvevLDGDn.vrhgLnkdLGfseedrkenirrigevakllvesgvivltafisPyradrdevrelv 112
                 +   l + G sg+Gk+  a+ l + L+     ++ L+        L++ +G  +  r+ n  r g+   l  ++++ +  a++s y  ++ +v +  
  MMETSP1137-20121227|3801_1 114 TNQALIISGESGAGKTETASFLLQYLRFVTNASNALENRIyASSPLTEAFGCAKTLRNDNSSRFGKFLMLQFDQSAKIQGAVLSTYLLEKSRVSHVG 210
                 5567889*******************9999999999876514567**********************999999999999*******99999998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (294 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       190  (0.0463189); expected 82.0 (0.02)
Passed bias filter:                      183  (0.0446124); expected 82.0 (0.02)
Passed Vit filter:                        24  (0.0058508); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.30u 0.19s 00:00:00.49 Elapsed: 00:00:00.36
# Mc/sec: 1077.91
//
Query:       MMETSP1137-20121227|3802_1  [L=577]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.3e-81  270.8  19.8    5.2e-81  270.5  13.7    1.0  1  TIGR00879 SP: MFS transporter, sugar porter (SP) family
    1.9e-16   57.8  18.6    4.1e-16   56.7  12.9    1.4  1  TIGR00898 2A0119: cation transport protein
    6.9e-11   39.6  23.4    1.3e-07   28.9  15.5    2.6  2  TIGR00883 2A0106: MFS transporter, metabolite:H+ symporter (MHS) family protein
    2.9e-10   37.4  21.4    7.2e-10   36.1  14.8    1.6  1  TIGR00895 2A0115: MFS transporter, aromatic acid:H+ symporter (AAHS) family
      1e-08   32.5  18.0      5e-08   30.2   5.5    2.2  2  TIGR00891 2A0112: MFS transporter, sialate:H+ symporter (SHS) family
    7.5e-05   20.7  43.0    8.1e-05   20.6  12.3    3.3  3  TIGR00880 2_A_01_02: multidrug resistance protein
    7.6e-05   19.6  34.6    8.5e-05   19.5   6.1    2.5  3  TIGR00893 2A0114: D-galactonate transporter
  ------ inclusion threshold ------
        0.2    8.3  17.7     0.0029   14.4   4.8    2.4  2  TIGR00887 2A0109: phosphate:H+ symporter
        4.6    2.8  10.0       0.64    5.6   2.0    2.2  2  TIGR01299 synapt_SV2: synaptic vesicle protein SV2


Domain annotation for each model (and alignments):
>> TIGR00879  SP: MFS transporter, sugar porter (SP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  270.5  13.7   1.1e-83   5.2e-81      42     510 .]      97     571 ..      67     571 .. 0.89

  Alignments for each domain:
  == domain 1    score: 270.5 bits;  conditional E-value: 1.1e-83
   TIGR00879  42 lltpallgsnyvfvallsllaalagllfgYdtavisaalallkfefkftsnlsd...asssqwglvvsillvGgligalfagylsdrfgrkkslliiallfvigailsllaatals..........vevlivgRvllGigvGiasalvPlYisEiApkalRgalvslyqlaitfGilvaaifgsgklvanntlgwriplglqlipalllllglfflPesprwLvekgkeee..Arkslarlrgeksedkelleelelikikreiekesvnks.gaelfslkkr.i.irrlllgvvlqafqQltGiNaimyYsptifenlGvstdtallvsiivgavnvaaTfvaiflvdrfGRrtllliGaagmaiclfvlgilgvssvtgsskaasivaivfillfiaayalgigpvvwvlvsEifplsvRpkgiaiavaanwlanfiiallfpimlensigqgvvFiffgalnvlalilvyfflpetkgltleei 510
                  + +  ++ ++++v   +++a l+++ fg+ +a +++  a++  ++ +     +   ++++ wgl+v+i+ +Ggl+g++++ ++ d fgrk +ll i++ f +g++l++++a+             v ++++gRv++G + G  +++vP+Y+ Ei+ ++lRgal++++ql  ++  l a+++g+ +l+ + +  w++ l l+l+pa+l++++   lPesprwL ++   e   A+++la lrg++    e+++el++++  +  ++++  +    +l  l ++ + +r+l+  v + ++qQ++GiN  +++s t+++  G+ ++t  l  +++++ nv+ ++++++l d +GRr+l + +++gm +  fvl+++    +++   + + +a+  ++ f+ ++ +g+gpv+w+l +E+fp ++ ++g+ai++ +nwlanf+++l+f+ +   +   g+ F+ f++   ++l++vy  +pet+g+t+e+i
  MMETSP1137-20121227|3802_1  97 QIVVVEKRVTAPLV-WATFMAVLCSIQFGWNNANMNTPSAAMRADLGLL----AvfpETNAVWGLIVAIFCLGGLMGCMLGATVADAFGRKGALLSISATFAVGGLLQAASAVPGCaappcsmssgVVMMMLGRVVVGVASGATTVVVPMYLGEISLPHLRGALGTIFQLTCVTAMLAAQVLGIPALM-GRSGVWPWYLLLNLLPAALQFALQHKLPESPRWLAGRTALEAesAESILALLRGVPVDSLEVMQELDFMQQGSG-KGNFDIPGyKPSLRHLLRDrSlRRSLTVCVTTLVVQQFSGINNAFNFSSTFLSANGIPESTVTLIAVLMNVGNVVISLFVVYLMDELGRRPLIVSSTVGMICSIFVLTVALTNAGHD---WTAPLAVCAVVGFVTCFGIGMGPVPWLLPAEVFPMELSAIGSAISASSNWLANFVVGLVFLPLAX-T-LGGFCFLPFAFVLGAFLVFVYYRIPETRGKTVEQI 571
                 34444455565555.4689999************998777777776666....33569**************************************************666654448999***************************************************************55555.89**********************************99766557************************988886.66677777799999999998846666667777899************************999**********************************************999999995...88999********************************************************9999.3.5677*****************************97 PP

>> TIGR00898  2A0119: cation transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.7  12.9     9e-19   4.1e-16     126     502 ..     152     567 ..     146     570 .. 0.75

  Alignments for each domain:
  == domain 1    score: 56.7 bits;  conditional E-value: 9e-19
   TIGR00898 126 wkvkltqsvvfvGvLlGslvlGqlsDrfGRkkvLllstlvtavsgvlta.............fspnytvflvlrlLvGvgiagivvvalvLitEflpkkaRaivgil...ievffalGllllallAYlird..WRwLlllvslPlvlflvlvwfvpESpRwlisqgr..ieeAlkiLkrvAkingk..klpaevlslslekel...sekkakkaslldllrtpklrkttlllmllwfttafsYygLvldleelggn........iYldllisglvelpaklitlllidrLgRrktmaaslllagvallllll.vpeelkllrtalavvgkagissaFqmay.....lytaELYPTvvRnlg..vgvcstma...rvGsiisPflvyvlgevslflplvifgvlallagllsllLPetkgva 502
                 ++  l+ +++ +G L+G ++  +++D fGRk +Ll      av g+l+a             +s    ++++ r++vGv++++ +vv+ +   E+   + R   g++    +v+ +l + +l + A + r+  W w lll  lP  l ++l   +pESpRwl  +     e A++iL   + ++    ++ ++ l++  +            k+sl +llr ++lr+ + ++++  +   fs    +++ + ++ +        + l ++++ + ++ + l ++ l+d+LgRr  ++ s++ +++++++l + + +  + +++ lav + +g    F + +     l+ aE++P  + ++g  ++++s +     vG ++ P+    lg +  ++ +++ g+ ++    +   +Pet+g++
  MMETSP1137-20121227|3802_1 152 AVWGLIVAIFCLGGLMGCMLGATVADAFGRKGALLSISATFAVGGLLQAasavpgcaappcsMSSGVVMMMLGRVVVGVASGATTVVVPMYLGEISLPHLRGALGTIfqlTCVTAMLAAQVLGIPALMGRSgvWPWYLLLNLLPAALQFALQHKLPESPRWLAGRTAleAESAESILALLRGVPVDslEV-MQELDFMQQGSGkgnFDIPGYKPSLRHLLRDRSLRRSLTVCVTTLVVQQFSGINNAFNFSSTFLSangipestVTLIAVLMNVGNVVISLFVVYLMDELGRRPLIVSSTVGMICSIFVLTVaLTNAGHDWTAPLAVCAVVGFVTCFGIGMgpvpwLLPAEVFPMELSAIGsaISASSNWLanfVVGLVFLPLAXT-LGGFCFLPFAFVLGAFLVF---VYYRIPETRGKT 567
                 55678899**************************988888889999988222222222222234457899999********9977776666678888899*999998232455666666677777999999*******************************9887511578999999888887763233.3333333222222222223579*************9988888888888887777777777777667788888899999999*********************************99877551667778999999999999999999865444444999*****99999873356666664333688888888888.7777666666666665443...345577777766 PP

>> TIGR00883  2A0106: MFS transporter, metabolite:H+ symporter (MHS) family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   2.1     0.015       6.6     276     371 ..     110     203 ..      93     221 .. 0.62
   2 !   28.9  15.5   2.9e-10   1.3e-07      24     361 ..     147     517 ..     135     542 .. 0.78

  Alignments for each domain:
  == domain 1    score: 3.5 bits;  conditional E-value: 0.015
   TIGR00883 276 lviplsgllsd.riGrrkvlilltvlaallavpllsallesssillvlllllllalivamytgvmaallaelfptevRytgvslaynlasvigggla 371
                 ++  ++++l+  ++G  +  + +  +a+   + ll ++    ++ +v+ l++++ ++++++ ++ +a++a+ f+ +     +s ++++++++ +++a
  MMETSP1137-20121227|3802_1 110 VWATFMAVLCSiQFGWNNANMNTPSAAMRADLGLLAVFP---ETNAVWGLIVAIFCLGGLMGCMLGATVADAFGRKGALLSISATFAVGGLLQAASA 203
                 445555555433555555555555555444444444444...3445666666666777777777777778888888777777777777777766554 PP

  == domain 2    score: 28.9 bits;  conditional E-value: 2.9e-10
   TIGR00883  24 FfpssdplvallatlatfavgFlaRplGaivfGalgDrlGRkktLvvtlllMgigtvl..igllPsyat..iGiwAp.ilLlllrliQGlslGgEyggaalllaEsApegkrglygsfqqvgasvglllaalvvlllsallseealleWgWRiPFlvsvvlvligLylRlkleEtpvfekekekkkkear....................................kkriplaevltkkr.ke..lllvlglviatsvlfYllttylasYlkktaklglsaesallvlllalillllviplsgllsdriGrrkvlilltvlaallavpllsalless...sillvlllllllalivamytgvmaall.aelfptevRytgvslayn 361
                 F+ +++++ +l+  +a+f +g l+   G ++  +++D +GRk +L+   ++ ++g +l   + +P+ a+    +    ++++l r++ G++ G+    + ++l E++ ++ rg +g++ q++   ++l a+  vl++ al++ +    W W +  l+ ++ +++ ++l  kl E+p   + ++  ++e++                                      + +l+++l+ ++ +   +++v+ lv+ +++ +  +  ++ ++l+++   g+++++++l+ +l+++ ++++  ++ +l d +Grr++++  tv ++   + l +al++++   +  l++++++++   +++ +g++  ll ae+fp+e+ + g +++++
  MMETSP1137-20121227|3802_1 147 FP-ETNAVWGLI--VAIFCLGGLM---GCMLGATVADAFGRKGALLSISATFAVGGLLqaASAVPGCAAppCSMSSGvVMMMLGRVVVGVASGATTVVVPMYLGEISLPHLRGALGTIFQLTCVTAMLAAQ--VLGIPALMGRSG--VWPWYL--LLNLLPAALQFALQHKLPESPRWLAGRTALEAESAesilallrgvpvdslevmqeldfmqqgsgkgnfdipGYKPSLRHLLRDRSlRRslTVCVTTLVVQQFSGINNAFNFSSTFLSAN---GIPESTVTLIAVLMNVGNVVISLFVVYLMDELGRRPLIVSSTVGMICSIFVLTVALTNAGhdwTAPLAVCAVVGFVTCFGIGMGPVPWLLpAEVFPMELSAIGSAISAS 517
                 55.445555554..4678888777...554444689******999866666666666511346777766223333333678899*************************************9999988775..688999****99..799975..9999999**************9988777766665577899************************9999888666778888776532331134444555555555566666788888887...69**********************************888888888888888888999998643333556666677777778899998877369********99999865 PP

>> TIGR00895  2A0115: MFS transporter, aromatic acid:H+ symporter (AAHS) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.1  14.8   1.6e-12   7.2e-10      50     371 ..     150     507 ..     100     519 .. 0.74

  Alignments for each domain:
  == domain 1    score: 36.1 bits;  conditional E-value: 1.6e-12
   TIGR00895  50 dkvelGfllsagLiGmvlGallfgplaDrigRkrvllvsillfsvftla.............salatnvtqLlvlRflaglGlGgllpnliaLvsEyapkrfratvvglvavGyaiGaavgglla.allipafg.WrslflvggiiplllllllikvLpEsikflvek...kpekvrkilnai....apslqaeaqselaeeks.....eekkkrsvvkllfkgklakatllLwllyf.lll.vvvYlltsWlPkLlveagaslskaalllvllnvGgvlgslllgaladrlgpk...vlalllllaavfavlvvs..tlssptllllllvilGlfvngaqsglla...lmaefYptai 371
                 +++  G ++++  +G ++G +l++++aD +gRk +ll    +f+v+ l+             + ++  v+ +++ R++ g+  G+++  +   + E +   +r+ + +++++  +  ++ + +l+ + l+   g W   +l+  ++p+ l   l   LpEs ++l  +   + e++ +il+ +    ++sl+  ++  + ++ s     +    + + + l++++  +++l + +++  +++  ++  + +   + l+  g+  s  +l+ vl+nvG v+ sl++ +l+d lg++   v+ ++ ++ ++f+  v+     ++ t  l + +++G+++  ++++ ++   l ae++p + 
  MMETSP1137-20121227|3802_1 150 TNAVWGLIVAIFCLGGLMGCMLGATVADAFGRKGALLSISATFAVGGLLqaasavpgcaappCSMSSGVVMMMLGRVVVGVASGATTVVVPMYLGEISLPHLRGALGTIFQLTCVTAMLAAQVLGiPALMGRSGvWPWYLLLN-LLPAALQFALQHKLPESPRWLAGRtalEAESAESILALLrgvpVDSLEVMQELDFMQQGSgkgnfDIPGYKPSLRHLLRDRSLRRSLTVCVTTLvVQQfSGINNAFNFSSTFLSANGIPESTVTLIAVLMNVGNVVISLFVVYLMDELGRRpliVSSTVGMICSIFVLTVALtnAGHDWTAPLAVCAVVGFVTCFGIGMGPVpwlLPAEVFPMEL 507
                 567789******************************9988888887665222333333333345788999************************************9999999999999999988434444444388888888.9********************99977644444444433311112233333333444444411111345678888999999999998888887763444157889999999*****************************************63333446678889988888743446667778888999*9987766654332225566666655 PP

>> TIGR00891  2A0112: MFS transporter, sialate:H+ symporter (SHS) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.0   6.6    0.0013      0.57     263     381 ..     135     270 ..      88     272 .. 0.64
   2 !   30.2   5.5   1.1e-10     5e-08      94     366 ..     212     512 ..     205     525 .. 0.76

  Alignments for each domain:
  == domain 1    score: 7.0 bits;  conditional E-value: 0.0013
   TIGR00891 263 tyLkadlgl...skdtvav...ivvvsniGaivGglvfGtlsevlgrrkalv.ial..llgqll....iv.....PvfalsaekavLglglfllqllvqGvwGilPkhlaelapadaravvaGltYqlGnLaaalas 381
                   ++adlgl    ++t av   iv +  +G ++G++++ t+++ +gr+ al+ i++  ++g+ll     v     P   +s+ + ++ lg  ++ +       ++P++l+e++    r++ +G  +ql  ++a la+
  MMETSP1137-20121227|3802_1 135 AAMRADLGLlavFPETNAVwglIVAIFCLGGLMGCMLGATVADAFGRKGALLsISAtfAVGGLLqaasAVpgcaaPPCSMSSGVVMMMLGRVVVGVASGATTVVVPMYLGEISLPHLRGA-LGTIFQLTCVTAMLAA 270
                 556777544222344443223389999********************9998743431156776622223411111344455666666666656555555556699*************97.6888999888877765 PP

  == domain 2    score: 30.2 bits;  conditional E-value: 1.1e-10
   TIGR00891  94 cafaptyekllivrlviGigmgGeyGlaaalaiedvPkklrsvlsGllisgyavGfvlaavvysv..vvnvlgdsWriLfflsilpiilalflrkrvpeaevwkeklkak.klvktrvdkvlggealvkaivktkava.....................mkrsvqkrwllfvyLvvllvaanylshaiqdllPtyLkadlglskdtvavivvvsniGaivGglvfGtlsevlgrrkalvialllgqllivPvfals......ae..kavLglglfllqllvqGv.wGilPkhl.aelapadaravva 366
                 c+ + + ++++  r+v+G++ g    +   +  e    +lr+ l  +++    v ++laa+v  +  ++   g  W +   l +lp+ l + l++++pe+  w + + a  +    ++  +l+g ++    v++ +                       + r    r  l v +  l+v  +     + +   t+L a+ g+ + tv+ i v++n+G +v +l    l++ lgrr  +v + ++g   i  +f+l+       +  +a L++ + +  +  +G+ +G +P +l ae++p +  a++ 
  MMETSP1137-20121227|3802_1 212 CSMSSGVVMMMLGRVVVGVASGATTVVVPMYLGEISLPHLRGALGTIFQL-TCVTAMLAAQVLGIpaLMGRSG-VWPWYLLLNLLPAALQFALQHKLPESPRWLAGRTALeAESAESILALLRGVPVDSLEVMQELDFmqqgsgkgnfdipgykpslrhLLRDRSLRRSLTVCVTTLVVQQFSGINNAFNFSSTFLSAN-GIPESTVTLIAVLMNVGNVVISLFVVYLMDELGRRPLIV-SSTVGM--ICSIFVLTvaltnaGHdwTAPLAVCAVVGFVTCFGIgMGPVPWLLpAEVFPMELSAIGS 512
                 7778888999999*******9999999999999988889***99666665.5777888888865511444444.8****************************9987765155667799999**9999999999877678899***************95555555557888999999999999999999******997.99*******************************997665.555663..33333332111011121123455555555556666544667766656777777776665 PP

>> TIGR00880  2_A_01_02: multidrug resistance protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.4   3.9    0.0043         2      83     129 ..     148     194 ..     105     205 .. 0.76
   2 !   20.6  12.3   1.8e-07   8.1e-05       1     136 [.     155     305 ..     155     309 .. 0.95
   3 !    6.5  10.0     0.004       1.8       6     141 .]     421     563 ..     416     563 .. 0.70

  Alignments for each domain:
  == domain 1    score: 6.4 bits;  conditional E-value: 0.0043
   TIGR00880  83 eersvalgllsagialgpilGpllGavlaqalgwralflilallall 129
                  e +++ gl++a++ lg ++G +lGa +a+a+g++  +l ++++ ++
  MMETSP1137-20121227|3802_1 148 PETNAVWGLIVAIFCLGGLMGCMLGATVADAFGRKGALLSISATFAV 194
                 4778899**********************999988777666665554 PP

  == domain 2    score: 20.6 bits;  conditional E-value: 1.8e-07
   TIGR00880   1 glllagyAlgqlvvsplsglltdrvGrkpvllvglfifvlsqllfals.............snitvliiarilqGfgaaaalvagaaliadiikeeersvalgllsagialgpilGpllG..avlaqalgwralflilallallafilllf 136
                 gl +a++ lg l+  +l  +++d +Grk  ll   ++f+++ ll a+s             s ++++++ r+++G++++a  v++  ++ +i+ ++ r++   ++ + ++++++ + +lG  a+++    w + +l+ +l a+l f+l+  
  MMETSP1137-20121227|3802_1 155 GLIVAIFCLGGLMGCMLGATVADAFGRKGALLSISATFAVGGLLQAASavpgcaappcsmsSGVVMMMLGRVVVGVASGATTVVVPMYLGEISLPHLRGALGTIFQLTCVTAMLAAQVLGipALMGRSGVWPWYLLLNLLPAALQFALQHK 305
                 7899************************************99999999999*********99999******************************************************98889999999***************999765 PP

  == domain 3    score: 6.5 bits;  conditional E-value: 0.004
   TIGR00880   6 gyAlgqlvvsplsglltdrvGrkpvllvglfifvlsqllfals.....snitvliiarilqGfgaaaalvagaaliadiikeeersvalgllsagi.algpilGpllGavla...qalgwralflilallallafilllfllpeT 141
                 ++ +g +v+s+++ +l+d +Gr+p+++ +++ ++ s ++++++     +  t  +   +++Gf + + + +g   +  + ++e ++  l+ + ++i a ++ l+ ++ ++++   + +   ++fl  a++ +++++ ++  +peT
  MMETSP1137-20121227|3802_1 421 LMNVGNVVISLFVVYLMDELGRRPLIVSSTVGMICSIFVLTVAltnagHDWTAPLAVCAVVGFVTCFGIGMG--PVPWLLPAEVFPMELSAIGSAIsASSNWLANFVVGLVFlplAXTLGGFCFLPFAFVLGAFLVFVYYRIPET 563
                 567899**********************99877665555555544766666666677778888877766666..67777777777777776655541445666666666666666333333688888888888888888888886 PP

>> TIGR00893  2A0114: D-galactonate transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.1      0.32   1.5e+02     282     336 ..     104     157 ..      99     161 .. 0.60
   2 !    7.9  10.6    0.0006      0.27     254     369 ..     155     275 ..     150     294 .. 0.80
   3 !   19.5   6.1   1.9e-07   8.5e-05     237     395 ..     400     554 ..     341     558 .. 0.71

  Alignments for each domain:
  == domain 1    score: -1.1 bits;  conditional E-value: 0.32
   TIGR00893 282 g..kslvlarktaiiaglvlsllliatnlvaskiaalalvalaffgkglaailwavi 336
                 +    lv+a+++a+++ +        + +++s+++++ l  la+f +  + ++w +i
  MMETSP1137-20121227|3802_1 104 RvtAPLVWATFMAVLCSIQFGWNNANM-NTPSAAMRADLGLLAVFPE--TNAVWGLI 157
                 434678999999999944333333333.3556677777777777766..66666665 PP

  == domain 2    score: 7.9 bits;  conditional E-value: 0.0006
   TIGR00893 254 gllaslpaivgfvgmvlggilsdlllkkgkslvlarktaiiaglvlsllliatnlva.....skiaalalvalaffgkglaailwavisdvlskeiagltgGlinllGnlagivgPiviga 369
                 gl+ ++  + g++g++lg+ ++d + +kg  l+++ ++a+ ++l ++ ++ +++  +       ++++ + +++++++g++++++++    +s      + G+i  l ++ ++++++v+g 
  MMETSP1137-20121227|3802_1 155 GLIVAIFCLGGLMGCMLGATVADAFGRKGALLSISATFAVGGLLQAASAVPGCAAPPcsmssGVVMMMLGRVVVGVASGATTVVVPMYLGEISLPHLRGALGTIFQLTCVTAMLAAQVLGI 275
                 7889999999************************999999998876666655552223321133444444579999999999999999999999999********************9995 PP

  == domain 3    score: 19.5 bits;  conditional E-value: 1.9e-07
   TIGR00893 237 wfplylkqerglslleagllaslpaivgfvgmvlggilsdlllkkgkslvlarktaiiaglvlsllli..atn.lvaskiaalalvalaffgkglaailwavisdvlskeiagltgGlinllGnlagivgPivigaiaattGsfagallvvaalaligalsv 395
                 +++++l  ++ +   ++ l+a+l  +  +v  + + +l d l ++   l+++ ++++i+ +++ +++   a +  +a+ ++++++  +  fg g++ ++w ++++v+++e ++++ ++  ++ +la++v+ +v+  +a t G f     ++  + ++ga++v
  MMETSP1137-20121227|3802_1 400 FSSTFLSANG-IPESTVTLIAVLMNVGNVVISLFVVYLMDELGRRP--LIVSSTVGMICSIFVLTVALtnAGHdWTAPLAVCAVVGFVTCFGIGMGPVPWLLPAEVFPMELSAIGSAISASSNWLANFVVGLVFLPLAXTLGGF----CFLPFAFVLGAFLV 554
                 4566665544.44566777777777767777777778899999996..***********876655443113343445556666666788999999*******************999999999******************944....44444444444444 PP

>> TIGR00887  2A0109: phosphate:H+ symporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   2.1      0.27   1.3e+02      63     165 ..     159     267 ..     148     279 .. 0.69
   2 ?   14.4   4.8   6.3e-06    0.0029     347     501 ..     425     573 ..     393     574 .. 0.74

  Alignments for each domain:
  == domain 1    score: -0.9 bits;  conditional E-value: 0.27
   TIGR00887  63 asasvgtllgqllfglladllgrkrvygleliivivatvasalsak.......ssalsvvatllfyrlllgvGiggdyplsaiitsefatkkrRGaliaavFamqgfGil 165
                 a   +g l+g +l +++ad +grk           v  +++a+sa         s  s v +++  r+++gv  g    +  +   e +    RGal +++F +  +  +
  MMETSP1137-20121227|3802_1 159 AIFCLGGLMGCMLGATVADAFGRKGALLSISATFAVGGLLQAASAVpgcaappCSMSSGVVMMMLGRVVVGVASGATTVVVPMYLGEISLPHLRGAL-GTIFQLTCVTAM 267
                 5556788999999999999999997554444445555555554443333322255566677788889999999999999999999999999999996.667766555444 PP

  == domain 2    score: 14.4 bits;  conditional E-value: 6.3e-06
   TIGR00887 347 gtvPGYWvtvflvdklGRkaiqlmGFviltvlfvvlaiaynelsek..gllalyvlaqfFanFGPn..attFivPaevFPaRlRstahGisaaaGkvGaiiaqlalslladkgaakkgkptgiwvenvleifalvmllGilftlLiPetkgksleelsr 501
                 g v    + v+l+d+lGR+++ +   v +   ++vl++a  +  ++  + la+ +++ f + FG       +++PaevFP  l + +  isa +  +   +  l ++ la    +  g    +++  ++    l  +l +++   iPet+gk++e++ +
  MMETSP1137-20121227|3802_1 425 GNVVISLFVVYLMDELGRRPLIVSSTVGMICSIFVLTVALTNAGHDwtAPLAVCAVVGFVTCFGIGmgPVPWLLPAEVFPMELSAIGSAISASSNWLANFVVGLVFLPLAX---TLGGF---CFLPFAFV---LGAFL-VFVYYRIPETRGKTVEQIVK 573
                 44555568899*********9998888777777778887777777777788888888888888754115689***************************999999999998...22222...33332222...22222.34456799999999999876 PP

>> TIGR01299  synapt_SV2: synaptic vesicle protein SV2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   2.0    0.0014      0.64     202     291 ..     152     254 ..     138     323 .. 0.69
   2 ?    1.3   0.5     0.028        13     209     643 ..     420     461 ..     400     565 .. 0.77

  Alignments for each domain:
  == domain 1    score: 5.6 bits;  conditional E-value: 0.0014
   TIGR01299 202 snkgllglivylgmmvgaflwggladklgrkqsll.is..lsvnsvfafls..........sfvqgygtfllcrllsgvgiggaipivfsyfaevlarekrge 291
                 +  gl+ +i  lg ++g++l   +ad  grk +ll is  ++v +++   s          s+  g  +++l r++ gv  g +  +v  y+ e+     rg 
  MMETSP1137-20121227|3802_1 152 AVWGLIVAIFCLGGLMGCMLGATVADAFGRKGALLsISatFAVGGLLQAASavpgcaappcSMSSGVVMMMLGRVVVGVASGATTVVVPMYLGEISLPHLRGA 254
                 44577888999********************999843222445555433321112222222677888889999999999999999999999999877776664 PP

  == domain 2    score: 1.3 bits;  conditional E-value: 0.028
   TIGR01299 209 livylgmmvgaflwggladklgrkqsllislsvnsvfaflssfvqgygtfllcrllsgvgiggaipivfsyfaevlarekrgehlswlcmfwmiggvyaaamawaiiphygwsfsmgsayqfhswrvfvlvcalpsvsavvalttqpesprfllevgkhdeawmvlklvhdtnmrakgqpekvfsvtkiktikqidelieiesdtgtwyrrlfvrilsllyqvwltflrcfsyevreitlkltivwftlsfsyyglsvwfpdvikhlqaveyalltkvvqkekvenvsinftlenqvhrggeydndkflglklksvsfkdslfkectfedvtsvntyfknctfidtlfentdleeykfvdselvnssflhnkegcqldvdgddesaylvyfvsflgtlavlpgnivsal....lmdkigrlrmlagssvlsgvscffls 643
                 +++ +                                                                                                                                                                                                                                                                                                                                                                                                             gn+v +l    lmd++gr  ++  s+v    s f l+
  MMETSP1137-20121227|3802_1 420 VLMNV-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GNVVISLfvvyLMDELGRRPLIVSSTVGMICSIFVLT 461
                 33333.............................................................................................................................................................................................................................................................................................................................................................................................................4544433222266777776666666666666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (577 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       160  (0.0390054); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         9  (0.00219405); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.63u 0.13s 00:00:00.76 Elapsed: 00:00:00.73
# Mc/sec: 1043.26
//
Query:       MMETSP1137-20121227|3803_1  [L=248]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (248 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       108  (0.0263286); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.15s 00:00:00.35 Elapsed: 00:00:00.44
# Mc/sec: 743.94
//
Query:       MMETSP1137-20121227|3804_1  [L=161]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (161 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       187  (0.0455875); expected 82.0 (0.02)
Passed bias filter:                      149  (0.0363237); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.20s 00:00:00.39 Elapsed: 00:00:00.30
# Mc/sec: 708.34
//
Query:       MMETSP1137-20121227|3805_1  [L=228]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (228 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       125  (0.0304729); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.14s 00:00:00.34 Elapsed: 00:00:00.37
# Mc/sec: 813.34
//
Query:       MMETSP1137-20121227|3806_1  [L=739]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (739 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        63  (0.0153584); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.14s 00:00:00.58 Elapsed: 00:00:00.52
# Mc/sec: 1875.77
//
Query:       MMETSP1137-20121227|3807_1  [L=239]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (239 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        51  (0.012433); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.15s 00:00:00.36 Elapsed: 00:00:00.41
# Mc/sec: 769.40
//
Query:       MMETSP1137-20121227|3809_1  [L=367]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (367 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.10s 00:00:00.37 Elapsed: 00:00:00.51
# Mc/sec: 949.80
//
Query:       MMETSP1137-20121227|3810_1  [L=221]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (221 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        66  (0.0160897); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.18s 00:00:00.38 Elapsed: 00:00:00.41
# Mc/sec: 711.45
//
Query:       MMETSP1137-20121227|3811_1  [L=302]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (302 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        82  (0.0199902); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.15s 00:00:00.40 Elapsed: 00:00:00.35
# Mc/sec: 1138.88
//
Query:       MMETSP1137-20121227|3812_1  [L=71]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (71 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        83  (0.020234); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.17s 00:00:00.29 Elapsed: 00:00:00.28
# Mc/sec: 323.15
//
Query:       MMETSP1137-20121227|3813_1  [L=612]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.1e-68  227.6   0.0    6.7e-67  224.2   0.0    1.9  1  TIGR02730 carot_isom: carotene isomerase
    5.7e-37  125.3   0.0      2e-20   70.8   0.0    2.3  2  TIGR02734 crtI_fam: phytoene desaturase
    6.7e-26   88.8   0.0    2.4e-12   44.1   0.0    2.1  2  TIGR02733 desat_CrtD: C-3',4' desaturase CrtD
    7.9e-07   25.8   0.0    1.1e-06   25.3   0.0    1.2  1  TIGR00562 proto_IX_ox: protoporphyrinogen oxidase
    1.4e-06   25.5   3.0    2.6e-06   24.6   0.4    2.0  2  TIGR03364 HpnW_proposed: FAD dependent oxidoreductase TIGR03364
    1.9e-06   24.7   0.3    2.6e-06   24.2   0.2    1.2  1  TIGR01350 lipoamide_DH: dihydrolipoyl dehydrogenase
    2.7e-06   24.8   6.4    0.00064   16.9   1.3    3.0  3  TIGR03467 HpnE: squalene-associated FAD-dependent desaturase
    1.1e-05   21.2   1.2    1.5e-05   20.8   0.8    1.1  1  TIGR01372 soxA: sarcosine oxidase, alpha subunit family
    1.2e-05   22.1   3.1    0.00083   16.0   0.6    2.6  3  TIGR02485 CobZ_N-term: precorrin 3B synthase CobZ
    1.6e-05   21.5   0.6    2.4e-05   20.9   0.4    1.2  1  TIGR01424 gluta_reduc_2: glutathione-disulfide reductase
    1.9e-05   21.9   0.1    3.2e-05   21.1   0.1    1.3  1  TIGR00292 TIGR00292: thiazole biosynthesis enzyme
    9.8e-05   20.0   1.6     0.0002   19.0   1.1    1.5  1  TIGR02032 GG-red-SF: geranylgeranyl reductase family
    0.00013   18.3   0.1    0.00028   17.2   0.2    1.4  2  TIGR03997 mycofact_OYE_2: mycofactocin system FadH/OYE family oxidoreductase 2
    0.00055   16.7   1.4       0.04   10.6   1.1    2.1  2  TIGR00275 TIGR00275: flavoprotein, HI0933 family
    0.00064   16.5   0.2    0.00086   16.1   0.2    1.1  1  TIGR01438 TGR: thioredoxin and glutathione reductase
     0.0012   15.8   2.7     0.0041   14.1   1.4    2.0  2  TIGR03197 MnmC_Cterm: tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain
     0.0017   15.0   0.2     0.0028   14.3   0.1    1.2  1  TIGR01316 gltA: glutamate synthase (NADPH), homotetrameric
     0.0019   14.9   0.3      0.049   10.3   0.0    2.3  2  TIGR01292 TRX_reduct: thioredoxin-disulfide reductase
     0.0025   14.9   0.2     0.0036   14.4   0.1    1.2  1  TIGR01421 gluta_reduc_1: glutathione-disulfide reductase
     0.0041   12.4   0.0     0.0057   11.9   0.0    1.1  1  TIGR03315 Se_ygfK: putative selenate reductase, YgfK subunit
     0.0043   14.0   1.2     0.0069   13.3   0.8    1.3  1  TIGR02352 thiamin_ThiO: glycine oxidase ThiO
     0.0046   14.0   0.3     0.0078   13.2   0.2    1.3  1  TIGR01790 carotene-cycl: lycopene cyclase family protein
     0.0054   13.4   0.2     0.0088   12.7   0.1    1.2  1  TIGR01317 GOGAT_sm_gam: glutamate synthase, NADH/NADPH, small subunit
  ------ inclusion threshold ------
      0.015   12.1   0.0      0.023   11.5   0.0    1.2  1  TIGR00031 UDP-GALP_mutase: UDP-galactopyranose mutase
      0.018   11.7   1.5       0.52    6.9   0.0    2.2  2  TIGR01373 soxB: sarcosine oxidase, beta subunit family
      0.021   11.6   0.7      0.031   11.1   0.5    1.2  1  TIGR03378 glycerol3P_GlpB: glycerol-3-phosphate dehydrogenase, anaerobic, B subunit
      0.025   10.9   0.2       0.07    9.5   0.0    1.7  2  TIGR03140 AhpF: alkyl hydroperoxide reductase, F subunit
      0.031   10.8   3.5       0.01   12.4   0.6    1.4  2  TIGR01813 flavo_cyto_c: flavocytochrome c
      0.043   10.3   3.1       0.11    9.0   0.1    2.5  3  TIGR00551 nadB: L-aspartate oxidase
      0.044   10.3   1.7        1.2    5.5   0.0    2.1  2  TIGR01811 sdhA_Bsu: succinate dehydrogenase or fumarate reductase, flavoprotein subunit
      0.055   10.1   0.5      0.089    9.4   0.3    1.3  1  TIGR01988 Ubi-OHases: ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family
      0.055    9.4   0.4      0.089    8.7   0.2    1.2  1  TIGR01816 sdhA_forward: succinate dehydrogenase, flavoprotein subunit
      0.074    9.7   0.2        0.1    9.3   0.1    1.1  1  TIGR02732 zeta_caro_desat: carotene 7,8-desaturase


Domain annotation for each model (and alignments):
>> TIGR02730  carot_isom: carotene isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  224.2   0.0   5.4e-69   6.7e-67       1     487 [.      94     596 ..      94     600 .. 0.84

  Alignments for each domain:
  == domain 1    score: 224.2 bits;  conditional E-value: 5.4e-69
   TIGR02730   1 ydaivigsgigglvtatqlaakgakvlvlekylipggsagyferegykfdvgaslifgfgdkgttnlltralaavgekletipdpvqihyhlpndlnvkvdreyekfleelvakf.phekegirkfydecwqvfnclnalellsleepry...llkvf...fkkplaclglvkylpqnvgdiarkyikdpellkfidiecfiwsvvpadltpminagmvlsd..rhygginypkggvgeiaeklvkglekag.gkirykarvtkiilendkavgvkladgekirakr.ivsnatrwdtfgkllkeenlpkkekkfrka...ykkspsflslhlgvkadllpe....gtechhllledwen.lekeegtifvsiptlldpelapegyhiihtftpss..ledweglspk..dyeakkeadaarlidrlekilpgldealdykevgtprshrrflgredgtygpiprrklkgllsmpfnrtaidglycvgdstfpgqglnavafsgfacahr 487
                 +d++vigsgiggl ta+  a  g+ v v e++  pgg+a  +  +g++f+ g sl  g++   + n l + ++ +ge+ + i  +    y   +++  +v    e+f+ +l  +  p+ +e   ++      + +++ al+  ++   ++    l  +   f + ++  g    lp+++  +  + i dp +l+++d+ cf++   ++d++p    + +lsd  r    +++p gg   i + lv+g+ k+  ++++ ++++ ++++ +++a gv+ a ge+ira++ +vsna  w t  +ll+  + p+      ++     ++ sfl lh+g+ a  lp+           +++ we+ ++ ++  i+vs+ +lldp lap+g h++h++tp++   e weg+  k  +y+ kke+ a  l   +ek +p + +  + + vgtp +h rfl r+ g+yg        g  ++p ++t ++gl+cvgdstfpg g+ ava sg++ a  
  MMETSP1137-20121227|3813_1  94 FDVVVIGSGIGGLCTAALAAHNGLSVAVCESHDAPGGAAHEWVVKGFHFESGPSLYAGLSPDNSPNPLKHVFQIIGEEPNWIQYDRWGTYLPEGNFAAAV--GAEDFMVKLRQYGgPDAEEQWGRLMARVTPLGEAIFALPSAAVRSDAWaavTLGRYaraFARVISAGGASLQLPFKT-ILEEESITDPFILHWLDMICFLLQGAKCDEAPTTLMAYMLSDfyRPNVCLDFPLGGTASIVDALVRGVVKHEhCELLLNTHIDEVVVSDGRACGVRTASGEIIRARQaVVSNADLWSTR-RLLSGGSAPSAATDLTERaetLGRCDSFLHLHIGIDAAGLPSvpseAFPAQWAVVDSWEKgVDAPRNLILVSVASLLDPTLAPDGCHVVHAYTPATepYEWWEGMDRKsaEYKRKKEEAADVLWRAVEKQIPDVRSRAKVTLVGTPLTHERFLRRDRGSYGAYVSAA-AG--QLPGQTTQLPGLFCVGDSTFPGIGMPAVAASGLIAANS 596
                 8*********************************************************************************988776665445566655..56899999988753777777888888888777777777766666555411144444111444455556777899975.578999***************************999999**9444566789****************98875279******************************86489*******96.56777777877766654411156899***********99886211133467789999*8758999****************************97634799***9754339**************************************************987654.45..56899****************************99875 PP

>> TIGR02734  crtI_fam: phytoene desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.1   0.0   7.5e-17   9.4e-15       1      70 [.      96     171 ..      96     173 .. 0.90
   2 !   70.8   0.0   1.6e-22     2e-20     198     488 ..     308     597 ..     299     603 .. 0.77

  Alignments for each domain:
  == domain 1    score: 52.1 bits;  conditional E-value: 7.5e-17
   TIGR02734   1 avViGaGlgGLAlAirLaaaGievtvlekrdkpGGRagvleedGfrfDtGPtvit......mPealeelfalvGkk 70 
                 +vViG+G+gGL +A++ a +G +v v e +d+pGG a  +  +Gf+f  GP+++        P+ l+++f+ +G++
  MMETSP1137-20121227|3813_1  96 VVVIGSGIGGLCTAALAAHNGLSVAVCESHDAPGGAAHEWVVKGFHFESGPSLYAglspdnSPNPLKHVFQIIGEE 171
                 79***************************************************96444433688999999999975 PP

  == domain 2    score: 70.8 bits;  conditional E-value: 1.6e-22
   TIGR02734 198 YalisaleleaGVwfprGGtsalvealaklae.dlggelrlnaeveeietegerataveledgerlea.davvsnaDlvhtykkllreeerrrkse..kklskkrlslslvvlyfGlkGvegelpqlaHHtllfgerykelieeifkkselaedf.slylvsp.tvtdpslAPegkeslyvLvPvphlga......aadvdwskegerlrdrilaeleeralpdlrerivverlltPadfedelnaalGsafslehtltQsaffRprnrsekvdnlylvGagThPGvGvPgvliSaklvakli 488
                 Y l      +    fp GGt+ +v+al++ +  +   el ln++ +e+ ++++ra +v++++ge ++a +avvsnaDl  t + l + ++  ++++  ++ ++     s + l++G++  +  lp ++      +e++  + + + + ++  +++ +l+lvs  +  dp+lAP g++  +   P+++         +++ + +++ e+++d +   +e++ +pd+r+r +v+ + tP ++e+ l   +Gs       +   a      ++ ++ +l+ vG  T PG+G+P v  S+ ++a+ +
  MMETSP1137-20121227|3813_1 308 YMLSDFYRPNVCLDFPLGGTASIVDALVRGVVkHEHCELLLNTHIDEVVVSDGRACGVRTASGEIIRArQAVVSNADLWSTRRLLSGGSAPSAATDltERAETLGRCDSFLHLHIGID--AAGLPSVP------SEAFPAQWAVVDSWEKGVDAPrNLILVSVaSLLDPTLAPDGCHVVHAYTPATEPYEwwegmdRKSAEYKRKKEEAADVLWRAVEKQ-IPDVRSRAKVTLVGTPLTHERFLRRDRGSYGAY---VS-AAAGQLPGQTTQLPGLFCVGDSTFPGIGMPAVAASGLIAANSL 597
                 55555555566677*************9965538899*****************************98579***********999877665555551144444455566777888888..56777776......556666666666644434444156666666899******************96555887777777777788888888777777776.*********************999999986433...33.333334456789************************9998766 PP

>> TIGR02733  desat_CrtD: C-3',4' desaturase CrtD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.1   0.0   1.9e-14   2.4e-12       3      62 ..      95     154 ..      93     168 .. 0.94
   2 !   42.7   0.0   5.1e-14   6.4e-12     234     489 ..     330     598 ..     284     600 .. 0.80

  Alignments for each domain:
  == domain 1    score: 44.1 bits;  conditional E-value: 1.9e-14
   TIGR02733   3 svvviGaGiaGltaaallakrGlevtlleaaaqvGGCastfkrrgfifdvGatqvaGlep 62 
                 +vvviG+Gi+Gl +aal a++Gl+v + e++  +GG a  +  +gf f+ G    aGl p
  MMETSP1137-20121227|3813_1  95 DVVVIGSGIGGLCTAALAAHNGLSVAVCESHDAPGGAAHEWVVKGFHFESGPSLYAGLSP 154
                 79*******************************************************987 PP

  == domain 2    score: 42.7 bits;  conditional E-value: 5.1e-14
   TIGR02733 234 lsdrlveal.kkdggelllgqrveaietkeekaeakvvvdsrkkekeevkaddvvanlpaqsllelle...eaalskgyrkrlkklpepsGalvlylavkkaalpvdcpphl..q.flsd..eqG......slfvsvskegd.graPkGeatliass.ftdvdeWss...leeedytakkkeytktilerleekfdleeeelvhkelatPrtferytarpeGivGGlgqrlstfGpfglasrtPlkglWlvGdsiyPGeGtaGvsysalavvrqll 489
                 + d+lv ++ k++  elll+ +++++ +++++a ++++++     +   + + vv n   +s  +ll+     +++++  +r + l +    l l+ ++++a lp+  ++ +  q  + d  e+G       ++vsv+   d   aP G++ + a +  t+  eW++    ++++y++kk+e+++ + +++e+++   +++ + + ++tP t er+  r++G  G         G +   + t l gl+ vGds++PG G   v+ s l +++ l+
  MMETSP1137-20121227|3813_1 330 IVDALVRGVvKHEHCELLLNTHIDEVVVSDGRACGVRTASG----EIIRARQAVVSNADLWSTRRLLSggsAPSAATDLTERAETLGRCDSFLHLHIGIDAAGLPSVPSEAFpaQwAVVDswEKGvdaprnLILVSVASLLDpTLAPDGCHVVHAYTpATEPYEWWEgmdRKSAEYKRKKEEAADVLWRAVEKQIPDVRSRAKVTLVGTPLTHERFLRRDRGSYGAYVSAA--AGQLP-GQTTQLPGLFCVGDSTFPGIGMPAVAASGLIAANSLV 598
                 55777776515567899999999999999988888766655....22223355888888888888887665677889999**********************9987655443112123331245699999778899977655278********9976368888997522256789************************************************99865544..34432.567899**********************999988776 PP

>> TIGR00562  proto_IX_ox: protoporphyrinogen oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.3   0.0   9.1e-09   1.1e-06       4      59 ..      95     148 ..      92     165 .. 0.90

  Alignments for each domain:
  == domain 1    score: 25.3 bits;  conditional E-value: 9.1e-09
   TIGR00562   4 kvvvvGgGisGLciayalekerpdvelvlvEakdRvGGkiyTrkesGyllEkGprt 59 
                 +vvv+G+Gi GLc+a   + +  ++ + ++E++d  GG  +    +G+ +E Gp  
  MMETSP1137-20121227|3813_1  95 DVVVIGSGIGGLCTAALAAHN--GLSVAVCESHDAPGGAAHEWVVKGFHFESGPSL 148
                 8*************9876666..*******************************75 PP

>> TIGR03364  HpnW_proposed: FAD dependent oxidoreductase TIGR03364
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.6   0.4   2.1e-08   2.6e-06       2      39 ..      95     132 ..      94     135 .. 0.96
   2 ?    0.6   0.1      0.41        51     157     193 ..     340     382 ..     329     389 .. 0.77

  Alignments for each domain:
  == domain 1    score: 24.6 bits;  conditional E-value: 2.1e-08
   TIGR03364   2 dvvvvGaGivGlahAlaaarrGlkVtvierssraaGAs 39 
                 dvvv+G+Gi Gl +A+ aa++Gl+V+v e ++++ GA+
  MMETSP1137-20121227|3813_1  95 DVVVIGSGIGGLCTAALAAHNGLSVAVCESHDAPGGAA 132
                 9*********************************9995 PP

  == domain 2    score: 0.6 bits;  conditional E-value: 0.41
   TIGR03364 157 eekgveflwntavtevets.....tvrtsrGevh.aeqvlVcs 193
                 ++++ e+l+nt + ev  s      vrt+ Ge+  a+q +V +
  MMETSP1137-20121227|3813_1 340 KHEHCELLLNTHIDEVVVSdgracGVRTASGEIIrARQAVVSN 382
                 5677889999999998444446779********9999999875 PP

>> TIGR01350  lipoamide_DH: dihydrolipoyl dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.2   0.2   2.1e-08   2.6e-06       2      37 ..      94     130 ..      93     135 .. 0.91

  Alignments for each domain:
  == domain 1    score: 24.2 bits;  conditional E-value: 2.1e-08
   TIGR01350   2 ydvvviGgGpgGYvaAiraaqlglkvalvek.eklGG 37 
                 +dvvviG+G+gG  +A  aa++gl+va+ e  +  GG
  MMETSP1137-20121227|3813_1  94 FDVVVIGSGIGGLCTAALAAHNGLSVAVCEShDAPGG 130
                 8*****************************9677787 PP

>> TIGR03467  HpnE: squalene-associated FAD-dependent desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   1.3   5.2e-06   0.00064       1      39 [.      96     134 ..      96     146 .. 0.92
   2 ?    1.1   0.0      0.33        41     156     279 ..     280     401 ..     220     454 .. 0.70
   3 !    7.3   0.1    0.0043      0.53     340     428 ..     502     597 ..     496     599 .. 0.67

  Alignments for each domain:
  == domain 1    score: 16.9 bits;  conditional E-value: 5.2e-06
   TIGR03467   1 vvvvGgGlAGLaAAveLaraGvrvtllEarrqlGGRars 39 
                 vvv+G G+ GL  A+  a++G+ v + E+  + GG a  
  MMETSP1137-20121227|3813_1  96 VVVIGSGIGGLCTAALAAHNGLSVAVCESHDAPGGAAHE 134
                 89*********************************9975 PP

  == domain 2    score: 1.1 bits;  conditional E-value: 0.33
   TIGR03467 156 rlierlwepllvsaLNedperasaklaakVlrdsllakreasdlllprvdLselfvepaarylesrggevrlgtrvreleasaggiralveaaeetlaada.vvlAvpperaasllpeedlaakl 279
                   i + +++++    +++ ++a   l+a  l+d +   r +++l +p  +  ++ ++ ++ ++++++ e+ l+t++ e+ +s+g++    +a++e   a + vv  +  ++ ++ll + ++  ++
  MMETSP1137-20121227|3813_1 280 PFILHWLDMICFLLQGAKCDEAPTTLMAYMLSDFY---RPNVCLDFPLGGTASIVDALVRGVVKHEHCELLLNTHIDEVVVSDGRACGVRTASGEIIRARQaVVSNADLWSTRRLLSGGSAPSAA 401
                 55555555555555555555555555555555533...345677777777788888889999999999999999999999999997765666777755555055555678888888884443333 PP

  == domain 3    score: 7.3 bits;  conditional E-value: 0.0043
   TIGR03467 340 dlereeladrivaelrrllpkv........aeakllkakvikekrAtF....aatpglerlRPgartplpnlfLAGDwtatg..yPATlEgAvrSGvqAAeav 428
                 ++++ee ad +++ +++++p v         +++l++++  +  r  +    +a++g+    Pg+ t+lp+lf  GD t +g   PA     + SG  AA+++
  MMETSP1137-20121227|3813_1 502 KRKKEEAADVLWRAVEKQIPDVrsrakvtlVGTPLTHERFLRRDRGSYgayvSAAAGQL---PGQTTQLPGLFCVGDSTFPGigMPA----VAASGLIAANSL 597
                 34566666666666666666664444555556677788888888877722124444555...*****************99844555....678999999876 PP

>> TIGR01372  soxA: sarcosine oxidase, alpha subunit family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   0.8   1.2e-07   1.5e-05     169     208 ..      94     133 ..      89     138 .. 0.93

  Alignments for each domain:
  == domain 1    score: 20.8 bits;  conditional E-value: 1.2e-07
   TIGR01372 169 cDvLvvGaGpaGLaaAraAaraGarvilvdeqaeaGGsll 208
                  Dv+v+G+G  GL +A  Aa++G++v +++ + + GG+ +
  MMETSP1137-20121227|3813_1  94 FDVVVIGSGIGGLCTAALAAHNGLSVAVCESHDAPGGAAH 133
                 59***********************************976 PP

>> TIGR02485  CobZ_N-term: precorrin 3B synthase CobZ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.6   6.7e-06   0.00083       3      34 ..      95     126 ..      93     138 .. 0.85
   2 ?   -1.6   0.0       1.5   1.9e+02      64     123 ..     194     256 ..     186     265 .. 0.70
   3 ?    4.9   0.0     0.016         2     122     203 ..     322     401 ..     312     434 .. 0.75

  Alignments for each domain:
  == domain 1    score: 16.0 bits;  conditional E-value: 6.7e-06
   TIGR02485   3 dvlviGgGlaglCaaiearraGasvllleaaP 34 
                 dv+viG+G+ glC+a  a++ G sv + e+  
  MMETSP1137-20121227|3813_1  95 DVVVIGSGIGGLCTAALAAHNGLSVAVCESHD 126
                 8**************************99843 PP

  == domain 2    score: -1.6 bits;  conditional E-value: 1.5
   TIGR02485  64 paeelerdllkvtggrtderlarllieras..siarwliahGvhlqPaaaGtl.pysrrtafl 123
                  ae++   l++  g +++e+ +rl+++ +   +    l +  v+ + +aa tl  y+r  a +
  MMETSP1137-20121227|3813_1 194 GAEDFMVKLRQYGGPDAEEQWGRLMARVTPlgEAIFALPSAAVRSDAWAAVTLgRYARAFARV 256
                 689999999999999999999999988764113333455677888888888874577765544 PP

  == domain 3    score: 4.9 bits;  conditional E-value: 0.016
   TIGR02485 122 fllGGGkalvnalyasa.erlGveiryeaeveriereedgratiaarlaaaderiatkavvlaaGGlganreWlreafGsrae 203
                 f+lGG  ++v+al +   ++   e+  +++++ +     +++  ++r+ a++e i+++  v++   l + r  l     + a 
  MMETSP1137-20121227|3813_1 322 FPLGGTASIVDALVRGVvKHEHCELLLNTHIDEVVV--SDGRACGVRT-ASGEIIRARQAVVSNADLWSTRRLLSGGSAPSAA 401
                 99***********9976256679999*******999..7889999999.999***********99999999988766555544 PP

>> TIGR01424  gluta_reduc_2: glutathione-disulfide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   0.4   1.9e-07   2.4e-05       2      36 ..      93     127 ..      92     140 .. 0.87

  Alignments for each domain:
  == domain 1    score: 20.9 bits;  conditional E-value: 1.9e-07
   TIGR01424   2 dydlfviGaGsGGvraarlaaalGakvaiaeedlv 36 
                 d+d+ viG+G GG+ +a laa  G  va++e +  
  MMETSP1137-20121227|3813_1  93 DFDVVVIGSGIGGLCTAALAAHNGLSVAVCESHDA 127
                 9******************************8754 PP

>> TIGR00292  TIGR00292: thiazole biosynthesis enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1   0.1   2.6e-07   3.2e-05      21      60 ..      93     132 ..      85     143 .. 0.90

  Alignments for each domain:
  == domain 1    score: 21.1 bits;  conditional E-value: 2.6e-07
   TIGR00292  21 esDviivGaGpsGLtaayylakeglkvvvlerklaiGGGs 60 
                 + Dv+++G+G  GL +a   a++gl v+v e++ a+GG  
  MMETSP1137-20121227|3813_1  93 DFDVVVIGSGIGGLCTAALAAHNGLSVAVCESHDAPGGAA 132
                 57***********************************975 PP

>> TIGR02032  GG-red-SF: geranylgeranyl reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   1.1   1.6e-06    0.0002       1      36 [.      94     129 ..      94     132 .. 0.95

  Alignments for each domain:
  == domain 1    score: 19.0 bits;  conditional E-value: 1.6e-06
   TIGR02032   1 yDvvvvGaGpaGssaAlrlakkGlrVlllekkelpr 36 
                 +Dvvv+G G+ G  +A+ +a++Gl+V++ e +++p+
  MMETSP1137-20121227|3813_1  94 FDVVVIGSGIGGLCTAALAAHNGLSVAVCESHDAPG 129
                 7*******************************9986 PP

>> TIGR03997  mycofact_OYE_2: mycofactocin system FadH/OYE family oxidoreductase 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.2   2.3e-06   0.00028     376     418 ..      90     132 ..      77     139 .. 0.89
   2 ?   -4.0   0.0       6.1   7.6e+02     221     261 ..     391     432 ..     387     445 .. 0.81

  Alignments for each domain:
  == domain 1    score: 17.2 bits;  conditional E-value: 2.3e-06
   TIGR03997 376 arrrkkvlvvGgGPaGleaaataarrGhrvtllereeelGGqv 418
                 a+r   v+v+G+G +Gl  aa aa+ G +v ++e ++++GG+ 
  MMETSP1137-20121227|3813_1  90 ASRDFDVVVIGSGIGGLCTAALAAHNGLSVAVCESHDAPGGAA 132
                 455578***********************************85 PP

  == domain 2    score: -4.0 bits;  conditional E-value: 6.1
   TIGR03997 221 lveGGltlaeaveiaalleatglvD.ylntsigvaletLhlv 261
                 l++GG +++ a++++++ e  g  D +l++ ig+  + L  v
  MMETSP1137-20121227|3813_1 391 LLSGGSAPSAATDLTERAETLGRCDsFLHLHIGIDAAGLPSV 432
                 678999999999999999999999988999999988887755 PP

>> TIGR00275  TIGR00275: flavoprotein, HI0933 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.6   1.1   0.00032      0.04       1      33 [.      96     128 ..      96     130 .. 0.93
   2 ?    3.6   0.0     0.041         5      99     156 ..     322     381 ..     320     389 .. 0.84

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 0.00032
   TIGR00275   1 viiiGgGaaGlmaAitaaeegakVlllEknkki 33 
                 v++iG G  Gl +A+ aa++g++V++ E+++  
  MMETSP1137-20121227|3813_1  96 VVVIGSGIGGLCTAALAAHNGLSVAVCESHDAP 128
                 79**************************98876 PP

  == domain 2    score: 3.6 bits;  conditional E-value: 0.041
   TIGR00275  99 FPvsdsaksvldaLlkelkelgvevlteskvksi.kkeeekfevet.ekkeleakkvila 156
                 FP+  +a+ v ++    +k+ ++e+l+++++ ++  ++ + ++v+t +++ ++a + +++
  MMETSP1137-20121227|3813_1 322 FPLGGTASIVDALVRGVVKHEHCELLLNTHIDEVvVSDGRACGVRTaSGEIIRARQAVVS 381
                 666666665555556678999*************99**********99999999988876 PP

>> TIGR01438  TGR: thioredoxin and glutathione reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.2   6.9e-06   0.00086       2      47 ..      93     139 ..      92     146 .. 0.88

  Alignments for each domain:
  == domain 1    score: 16.1 bits;  conditional E-value: 6.9e-06
   TIGR01438   2 dydliviGgGsGGlaaakeaaklgakvllldfv.kptpqGtkwGiGG 47 
                 d+d++viG+G GGl++a  aa+ g  v++ +    p    ++w + G
  MMETSP1137-20121227|3813_1  93 DFDVVVIGSGIGGLCTAALAAHNGLSVAVCESHdAPGGAAHEWVVKG 139
                 8****************************986526888999998877 PP

>> TIGR03197  MnmC_Cterm: tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   1.4   3.3e-05    0.0041       1      38 [.      95     132 ..      95     134 .. 0.93
   2 ?   -0.5   0.0      0.88   1.1e+02     148     200 ..     332     383 ..     317     388 .. 0.83

  Alignments for each domain:
  == domain 1    score: 14.1 bits;  conditional E-value: 3.3e-05
   TIGR03197   1 kvavIGaGiAgaalalsLarrGvqvtllekdeklaqgA 38 
                 +v+vIG Gi g+++a   a  G++v + e++++++  A
  MMETSP1137-20121227|3813_1  95 DVVVIGSGIGGLCTAALAAHNGLSVAVCESHDAPGGAA 132
                 589******************************99655 PP

  == domain 2    score: -0.5 bits;  conditional E-value: 0.88
   TIGR03197 148 pelvkallakakielklhfnteitsler.daegWqllsengevlaasvvVlAng 200
                  +lv+ +++++++  +l  nt+i ++   d++   + +++ge + a++ V+ n+
  MMETSP1137-20121227|3813_1 332 DALVRGVVKHEHC--ELLLNTHIDEVVVsDGRACGVRTASGEIIRARQAVVSNA 383
                 4689999999999..99******998762555599999*******999999987 PP

>> TIGR01316  gltA: glutamate synthase (NADPH), homotetrameric
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.1   2.2e-05    0.0028     131     171 ..      91     131 ..      82     138 .. 0.92

  Alignments for each domain:
  == domain 1    score: 14.3 bits;  conditional E-value: 2.2e-05
   TIGR01316 131 stkkkvaviGaGpaGlavaselakkGhevtvfealhkpGGv 171
                 s ++ v viG+G  Gl+ a+  a++G +v v e+ + pGG 
  MMETSP1137-20121227|3813_1  91 SRDFDVVVIGSGIGGLCTAALAAHNGLSVAVCESHDAPGGA 131
                 56789**********************************96 PP

>> TIGR01292  TRX_reduct: thioredoxin-disulfide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.3   0.0   0.00039     0.049       2      39 ..      95     132 ..      94     144 .. 0.85
   2 ?    2.3   0.0       0.1        13     261     296 ..     563     597 ..     544     600 .. 0.78

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 0.00039
   TIGR01292   2 dviiiGaGpaGltaaiYaaranlktlliegkeaggqlt 39 
                 dv++iG+G +Gl +a  aa  +l++++ e+++a g  +
  MMETSP1137-20121227|3813_1  95 DVVVIGSGIGGLCTAALAAHNGLSVAVCESHDAPGGAA 132
                 9************999********99999888766554 PP

  == domain 2    score: 2.3 bits;  conditional E-value: 0.1
   TIGR01292 261 mrTsveGvfaaGDvrdkslrQvvtaagdGaiAalsv 296
                 + T+++G+f +GD +   +   ++ a++G iAa+s+
  MMETSP1137-20121227|3813_1 563 QTTQLPGLFCVGDSTFPGIGMPAV-AASGLIAANSL 597
                 78***********99876655554.46799998775 PP

>> TIGR01421  gluta_reduc_1: glutathione-disulfide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.1   2.9e-05    0.0036       2      38 ..      93     129 ..      92     136 .. 0.90

  Alignments for each domain:
  == domain 1    score: 14.4 bits;  conditional E-value: 2.9e-05
   TIGR01421   2 eydylviGGGsGGiasarraaeyGakallveekklGG 38 
                 ++d++viG G GG+ +a  aa+ G  +++ e+++  G
  MMETSP1137-20121227|3813_1  93 DFDVVVIGSGIGGLCTAALAAHNGLSVAVCESHDAPG 129
                 79******************************98654 PP

>> TIGR03315  Se_ygfK: putative selenate reductase, YgfK subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.9   0.0   4.5e-05    0.0057     535     578 ..      91     134 ..      77     144 .. 0.84

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 4.5e-05
   TIGR03315 535 sekhkvaviGaGPaGlsagyflaraGlpvtvfekkekagGvvkn 578
                 s    v viG+G  Gl+++ + a +Gl+v+v e ++ +gG  ++
  MMETSP1137-20121227|3813_1  91 SRDFDVVVIGSGIGGLCTAALAAHNGLSVAVCESHDAPGGAAHE 134
                 4456899*********************************8765 PP

>> TIGR02352  thiamin_ThiO: glycine oxidase ThiO
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   0.8   5.6e-05    0.0069       1      38 [.      96     133 ..      96     134 .. 0.94

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 5.6e-05
   TIGR02352   1 vlviGgGviGlsvAveLakrghkvtllekdevgsgAsk 38 
                 v+viG G+ Gl +A  +a++g +v++ e++++ +gA++
  MMETSP1137-20121227|3813_1  96 VVVIGSGIGGLCTAALAAHNGLSVAVCESHDAPGGAAH 133
                 79****************************98888876 PP

>> TIGR01790  carotene-cycl: lycopene cyclase family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   0.2   6.3e-05    0.0078       1      41 [.      95     136 ..      95     145 .. 0.84

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 6.3e-05
   TIGR01790   1 DliviGgGlAglaiAlelakpglrvqlieaapk.lpfnntyg 41 
                 D++viG+G  gl  A+  a+ gl+v + e+++   +  +++ 
  MMETSP1137-20121227|3813_1  95 DVVVIGSGIGGLCTAALAAHNGLSVAVCESHDApGGAAHEWV 136
                 9***************999**********9887344456665 PP

>> TIGR01317  GOGAT_sm_gam: glutamate synthase, NADH/NADPH, small subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.7   0.1     7e-05    0.0088     142     181 ..      92     131 ..      79     139 .. 0.88

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 7e-05
   TIGR01317 142 tGkkvavvGsGPaGlaaadqlnraGhtvtvferedrvGGl 181
                   + v v+GsG  Gl +a+  ++ G +v+v e +d  GG 
  MMETSP1137-20121227|3813_1  92 RDFDVVVIGSGIGGLCTAALAAHNGLSVAVCESHDAPGGA 131
                 567899********************************95 PP

>> TIGR00031  UDP-GALP_mutase: UDP-galactopyranose mutase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   0.00018     0.023       2      45 ..      94     137 ..      93     149 .. 0.90

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 0.00018
   TIGR00031   2 fdyiivGaGlsGivlaeilaklnkrvlvvekrnhiGGncydevd 45 
                 fd++++G+G+ G   a  +a+ + +v v e  +  GG +++ v 
  MMETSP1137-20121227|3813_1  94 FDVVVIGSGIGGLCTAALAAHNGLSVAVCESHDAPGGAAHEWVV 137
                 9************************************9987665 PP

>> TIGR01373  soxB: sarcosine oxidase, beta subunit family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   0.0    0.0042      0.52      29      64 ..      92     125 ..      84     136 .. 0.82
   2 ?    3.7   0.1     0.038       4.7     198     236 ..     344     381 ..     325     395 .. 0.77

  Alignments for each domain:
  == domain 1    score: 6.9 bits;  conditional E-value: 0.0042
   TIGR01373  29 peydviivGgGGhGlatayylakehGitnvavlekg 64 
                 + +dv+++G+G  Gl ta  la + G++ vav e  
  MMETSP1137-20121227|3813_1  92 RDFDVVVIGSGIGGLCTAA-LAAHNGLS-VAVCESH 125
                 579**************96.77777875.8888865 PP

  == domain 2    score: 3.7 bits;  conditional E-value: 0.038
   TIGR01373 198 vdiiqncevtglikredgrviGvetsrGfigakkvgvav 236
                  +++ n+ + ++++  dgr  Gv t+ G i  ++ +v++
  MMETSP1137-20121227|3813_1 344 CELLLNTHIDEVVVS-DGRACGVRTASGEIIRARQAVVS 381
                 567888999997777.9***********97666666654 PP

>> TIGR03378  glycerol3P_GlpB: glycerol-3-phosphate dehydrogenase, anaerobic, B subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.5   0.00025     0.031       1      30 [.      94     123 ..      94     132 .. 0.92

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 0.00025
   TIGR03378   1 fDviiiGgGlaGlscalrlaeaGkktaiia 30 
                 fDv++iG+G+ Gl++a  +a++G  +a+  
  MMETSP1137-20121227|3813_1  94 FDVVVIGSGIGGLCTAALAAHNGLSVAVCE 123
                 9***********************999876 PP

>> TIGR03140  AhpF: alkyl hydroperoxide reductase, F subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   0.0   0.00056      0.07     209     242 ..      90     123 ..      77     135 .. 0.86
   2 ?   -2.4   0.0       2.2   2.8e+02     278     323 ..     340     386 ..     330     391 .. 0.75

  Alignments for each domain:
  == domain 1    score: 9.5 bits;  conditional E-value: 0.00056
   TIGR03140 209 ekekydvlvvGgGPagaaaaiyaarkGlkvalva 242
                 + + +dv+v+G+G  g + a  aa  Gl+va+  
  MMETSP1137-20121227|3813_1  90 ASRDFDVVVIGSGIGGLCTAALAAHNGLSVAVCE 123
                 5678**************************9975 PP

  == domain 2    score: -2.4 bits;  conditional E-value: 2.2
   TIGR03140 278 keynidvleeqkvkkie.teeeakevelesGevlkaksvivatGakW 323
                 k+ + ++l ++++ ++   ++ a  v+ +sGe ++a+  +v+    W
  MMETSP1137-20121227|3813_1 340 KHEHCELLLNTHIDEVVvSDGRACGVRTASGEIIRARQAVVSNADLW 386
                 55666777777777777355566789999999999999999988777 PP

>> TIGR01813  flavo_cyto_c: flavocytochrome c
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.6     8e-05      0.01       1      38 [.      95     131 ..      95     134 .. 0.92
   2 ?   -3.5   0.0       5.6     7e+02     131     170 ..     329     368 ..     326     380 .. 0.72

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 8e-05
   TIGR01813   1 dvvvvGsGlAGlsaaleakkaglaevvvleKapviGGN 38 
                 dvvv+GsG+ Gl +a  a ++g  +v v e  ++ GG 
  MMETSP1137-20121227|3813_1  95 DVVVIGSGIGGLCTAALAAHNG-LSVAVCESHDAPGGA 131
                 8**************99999**.999999*99999996 PP

  == domain 2    score: -3.5 bits;  conditional E-value: 5.6
   TIGR01813 131 eivqklskk.akkegvelrlnskvedlikddqgqvtGvkvk 170
                  iv++l++  +k+e  el ln+++ +++   +g+  Gv  +
  MMETSP1137-20121227|3813_1 329 SIVDALVRGvVKHEHCELLLNTHIDEVVV-SDGRACGVRTA 368
                 68888877515666799999999999998.55688888754 PP

>> TIGR00551  nadB: L-aspartate oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   0.1   0.00087      0.11       2      33 ..      93     125 ..      92     137 .. 0.74
   2 ?    0.7   0.1      0.28        35     129     179 ..     329     376 ..     325     384 .. 0.81
   3 ?   -2.0   0.0       1.8   2.3e+02     343     360 ..     564     581 ..     562     601 .. 0.69

  Alignments for each domain:
  == domain 1    score: 9.0 bits;  conditional E-value: 0.00087
   TIGR00551   2 eadvvviGsGaagLsaalalaekyr.vvvlska 33 
                 ++dvvviGsG+ gL  a+ +a+++  v+v   +
  MMETSP1137-20121227|3813_1  93 DFDVVVIGSGIGGLCTAALAAHNGLsVAVCESH 125
                 589***********8766555555548887655 PP

  == domain 2    score: 0.7 bits;  conditional E-value: 0.28
   TIGR00551 129 evistLlkkakaepkveilerevaldllietgrvvGvlvvesetvevlhak 179
                  ++++L+  + ++ + e+l ++ + ++++++gr  Gv + + e    ++a+
  MMETSP1137-20121227|3813_1 329 SIVDALVRGVVKHEHCELLLNTHIDEVVVSDGRACGVRTASGEI---IRAR 376
                 689999999999*************************9988544...4443 PP

  == domain 3    score: -2.0 bits;  conditional E-value: 1.8
   TIGR00551 343 rtevkGLYaiGevastGl 360
                  t+++GL+ +G+++  G+
  MMETSP1137-20121227|3813_1 564 TTQLPGLFCVGDSTFPGI 581
                 5899********998886 PP

>> TIGR01811  sdhA_Bsu: succinate dehydrogenase or fumarate reductase, flavoprotein subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.6     0.039       4.8       1      34 [.      96     129 ..      96     139 .. 0.88
   2 ?    5.5   0.0    0.0095       1.2     379     410 ..     563     594 ..     561     600 .. 0.90

  Alignments for each domain:
  == domain 1    score: 3.5 bits;  conditional E-value: 0.039
   TIGR01811   1 vivvGtGlaGlsaaiklaelGydvklfsyqdavr 34 
                 v+v+G+G+ Gl +a+ +a++G +v     +da+ 
  MMETSP1137-20121227|3813_1  96 VVVIGSGIGGLCTAALAAHNGLSVAVCESHDAPG 129
                 79**********************9999999875 PP

  == domain 2    score: 5.5 bits;  conditional E-value: 0.0095
   TIGR01811 379 emttvpGlfaaGeadfsdhGanrlGansllsa 410
                 + t++pGlf++G++ f   G   + a+ l+ a
  MMETSP1137-20121227|3813_1 563 QTTQLPGLFCVGDSTFPGIGMPAVAASGLIAA 594
                 689*****************999999999876 PP

>> TIGR01988  Ubi-OHases: ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   0.3   0.00072     0.089       1      36 [.      95     129 ..      95     140 .. 0.82

  Alignments for each domain:
  == domain 1    score: 9.4 bits;  conditional E-value: 0.00072
   TIGR01988   1 divIvGgGlvGlalAlaLassadlkvalveakaaek 36 
                 d+v++G+G+ Gl +A+ La++++l+va+ e+++a+ 
  MMETSP1137-20121227|3813_1  95 DVVVIGSGIGGLCTAA-LAAHNGLSVAVCESHDAPG 129
                 9********9998886.555666*******999875 PP

>> TIGR01816  sdhA_forward: succinate dehydrogenase, flavoprotein subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   0.2   0.00072     0.089       2      31 ..      93     122 ..      92     125 .. 0.93

  Alignments for each domain:
  == domain 1    score: 8.7 bits;  conditional E-value: 0.00072
   TIGR01816   2 kfdvvvvGaGGaGlraalelakeglktavv 31 
                  fdvvv+G+G  Gl +a  +a++gl++av 
  MMETSP1137-20121227|3813_1  93 DFDVVVIGSGIGGLCTAALAAHNGLSVAVC 122
                 7**************************985 PP

>> TIGR02732  zeta_caro_desat: carotene 7,8-desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   0.1   0.00084       0.1       2      52 ..      96     145 ..      95     155 .. 0.90

  Alignments for each domain:
  == domain 1    score: 9.3 bits;  conditional E-value: 0.00084
   TIGR02732   2 vaivgaglaglatavelvdaghevelyesrsflggkvgswvdkdgnhiemg 52 
                 v ++g+g+ gl+ta   + +g  v + es    gg    wv  +g h e g
  MMETSP1137-20121227|3813_1  96 VVVIGSGIGGLCTAALAAHNGLSVAVCESHDAPGGAAHEWVV-KGFHFESG 145
                 789*************************************96.58999887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (612 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       168  (0.0409556); expected 82.0 (0.02)
Passed bias filter:                      158  (0.0385178); expected 82.0 (0.02)
Passed Vit filter:                        66  (0.0160897); expected 4.1 (0.001)
Passed Fwd filter:                        33  (0.00804486); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              33  [number of targets reported over threshold]
# CPU time: 0.75u 0.18s 00:00:00.93 Elapsed: 00:00:00.61
# Mc/sec: 1324.22
//
Query:       MMETSP1137-20121227|3814_1  [L=258]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (258 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        71  (0.0173086); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.17s 00:00:00.39 Elapsed: 00:00:00.34
# Mc/sec: 1001.56
//
Query:       MMETSP1137-20121227|3816_1  [L=644]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (644 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       101  (0.0246221); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.18s 00:00:00.62 Elapsed: 00:00:00.50
# Mc/sec: 1700.02
//
Query:       MMETSP1137-20121227|3817_1  [L=379]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.24    8.7   2.7       0.35    8.2   1.9    1.1  1  TIGR02907 spore_VI_D: stage VI sporulation protein D


Domain annotation for each model (and alignments):
>> TIGR02907  spore_VI_D: stage VI sporulation protein D
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   1.9   8.5e-05      0.35     128     218 ..      11     101 ..       3     111 .. 0.65

  Alignments for each domain:
  == domain 1    score: 8.2 bits;  conditional E-value: 8.5e-05
   TIGR02907 128 ladisisGlkqeaeldadaredeeeeealeaeleftarkeaaeeeesldkpkveseadetaeqPaekeedeleisaaeeaaleeekeesee 218
                 l  isi+G+++e++ d+d+ +d  e   l ae e+ a   + e +++ +kp+   ++ + a      ++++ e   ++   l  ++ +s e
  MMETSP1137-20121227|3817_1  11 LRGISIDGVQDELPDDDDNDDDLPEASELRAEDEQLAAVPPVEAHNRYEKPTPAGDKPRPAQSSSSGSAKQAETAVVQLKTLWANEVASSE 101
                 457*******9***99999999999999999999999999999999999999877776444333333333333322332233333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (379 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        82  (0.0199902); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.28u 0.13s 00:00:00.41 Elapsed: 00:00:00.47
# Mc/sec: 1064.34
//
Query:       MMETSP1137-20121227|3818_1  [L=739]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (739 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       148  (0.03608); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.16s 00:00:00.61 Elapsed: 00:00:00.55
# Mc/sec: 1773.45
//
Query:       MMETSP1137-20121227|3819_1  [L=279]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (279 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        49  (0.0119454); expected 82.0 (0.02)
Passed bias filter:                       33  (0.00804486); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.16s 00:00:00.40 Elapsed: 00:00:00.42
# Mc/sec: 876.78
//
Query:       MMETSP1137-20121227|3821_1  [L=58]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        51  (0.012433); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.18s 00:00:00.30 Elapsed: 00:00:00.27
# Mc/sec: 283.53
//
Query:       MMETSP1137-20121227|3822_1  [L=1354]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1354 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       197  (0.0480254); expected 82.0 (0.02)
Passed bias filter:                       99  (0.0241346); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.85u 0.19s 00:00:01.04 Elapsed: 00:00:00.59
# Mc/sec: 3029.04
//
Query:       MMETSP1137-20121227|3823_1  [L=343]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (343 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       114  (0.0277913); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.17s 00:00:00.43 Elapsed: 00:00:00.33
# Mc/sec: 1371.89
//
Query:       MMETSP1137-20121227|3824_1  [L=195]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0015   14.1   3.1     0.0018   13.9   2.1    1.0  1  TIGR02168 SMC_prok_B: chromosome segregation protein SMC
  ------ inclusion threshold ------
      0.013   12.5   0.6      0.029   11.4   0.1    1.7  2  TIGR02904 spore_ysxE: spore coat protein YsxE
      0.029    9.8   5.8      0.034    9.6   4.0    1.0  1  TIGR02169 SMC_prok_A: chromosome segregation protein SMC


Domain annotation for each model (and alignments):
>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   2.1   1.3e-06    0.0018     262     510 ..      51     154 ..      11     164 .. 0.35

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 1.3e-06
   TIGR02168 262 lkeleeeleelrlekse..leeeleelqkelqelkaeisrleqeieilkerleqlekeleeleeqleeleskkeeleeelaeleeeleelkeelesleaeleeaeaeleelesrleeleeeleelrsevaeleeqlaslnaelerleaeleqleerrerlkqeieelekkleeaeaelkelqeeleeleeeleeleeelerleealeeleeeleeaeqalqkaeeelaqlqarlesleslqenleglsegv 510
                  ++l+ ++ee++l+ +e   ++  + l+++  ++k+  ++++q +++l+                                                                                                                                                    e +++++ l+ ++++++++ ++l++++++l+  ++  + l++ + ++e+l+++v
  MMETSP1137-20121227|3824_1  51 KQQLQLKVEEHDLRPAEglQRDYTRVLRAQAAAIKSLNADMDQLKQMLE---------------------------------------------------------------------------------------------------------------------------------------------------FEMASVVAGLSVARKSIDQKDEDLREVNKKLKDSESMQDKLRESNLDVESLKKEV 154
                 1111111111111111100111112222222222222222222222222...................................................................................................................................................2333333333333333333333333333333333333333333333333333333 PP

>> TIGR02904  spore_ysxE: spore coat protein YsxE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.1   2.2e-05     0.029     230     271 ..      22      63 ..       5      70 .. 0.90
   2 ?   -0.9   0.0      0.12   1.7e+02     166     166 ..     107     107 ..      66     151 .. 0.49

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 2.2e-05
   TIGR02904 230 lkDliaflrrslktypkeeeevvewlktYekelplteeEkll 271
                  +D+i f  rsl++++ ++ +  +w+   +++l l+ eE+ l
  MMETSP1137-20121227|3824_1  22 NHDIIHFTVRSLEKVDDPIADYEHWMTAEKQQLQLKVEEHDL 63 
                 68*************************************877 PP

  == domain 2    score: -0.9 bits;  conditional E-value: 0.12
   TIGR02904 166 y 166
                  
  MMETSP1137-20121227|3824_1 107 A 107
                 2 PP

>> TIGR02169  SMC_prok_A: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   4.0   2.5e-05     0.034     775     885 ..      47     154 ..      15     162 .. 0.35

  Alignments for each domain:
  == domain 1    score: 9.6 bits;  conditional E-value: 2.5e-05
   TIGR02169 775 laklkealedleaelseekieeieeelekleeevsriearleeieaelnklelekelleeeiqelqeeieeleeqkkeiekeieelkakleeleeeleeleaavreLeeel 885
                 + + k+   +l+ + +e+ ++  e   ++   +++ + a++++++a++++l++  e++  ++    +  ++  +qk+e  +e+++  ++ e+++ +l+e +  v+ L++e 
  MMETSP1137-20121227|3824_1  47 MTAEKQ---QLQLKVEEHDLRPAEGLQRDYTRVLRAQAAAIKSLNADMDQLKQMLEFEMASVVAGLSVARKSIDQKDEDLREVNKKLKDSESMQDKLRESNLDVESLKKEV 154
                 222222...222233333333333333333333333333333333333333322222222222222222222222222222222222223333333333333333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (195 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       340  (0.0828864); expected 82.0 (0.02)
Passed bias filter:                      221  (0.0538762); expected 82.0 (0.02)
Passed Vit filter:                        24  (0.0058508); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.28u 0.22s 00:00:00.50 Elapsed: 00:00:00.41
# Mc/sec: 627.75
//
Query:       MMETSP1137-20121227|3825_1  [L=358]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.8e-05   21.8   2.5     0.0066   14.1   0.2    2.6  2  TIGR00231 small_GTP: small GTP-binding protein domain


Domain annotation for each model (and alignments):
>> TIGR00231  small_GTP: small GTP-binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.5   0.1   0.00017       0.7       4      24 ..      42      62 ..      39      87 .. 0.77
   2 !   14.1   0.2   1.6e-06    0.0066      41     127 ..     188     281 ..     163     341 .. 0.75

  Alignments for each domain:
  == domain 1    score: 7.5 bits;  conditional E-value: 0.00017
   TIGR00231  4 ikivivGhvdvGKstLlnsll 24
                +k +++G +++GKst++++++
  MMETSP1137-20121227|3825_1 42 VKMLLLGAGESGKSTIFKQMK 62
                6889*************9864 PP

  == domain 2    score: 14.1 bits;  conditional E-value: 1.6e-06
   TIGR00231  41 yvteqieedGktykvnllDTaGqedfdairrlyvreverslev.....vdivilvldveeglekqtkeiiheakkk...gvpiilvvnKiDlkd.d 127
                 +v++ +++++    + ++D++Gq   ++ + + + +v+ +++v     +d v++ +d+++  e+    + + a +    ++ +il++nK Dl + +
  MMETSP1137-20121227|3825_1 188 IVQTEFKVKS--LDFVMFDVGGQRNERRKWIHAFDNVKCVIFVaalseFDQVLYEDDTQNRMEEALSLFDQVANSRwfiDTSMILFLNKKDLFEaK 281
                 4556688888..88********988888888888888766554222227888997788888866655444444432333899*********97752 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (358 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       200  (0.0487567); expected 82.0 (0.02)
Passed bias filter:                      110  (0.0268162); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.29u 0.14s 00:00:00.43 Elapsed: 00:00:00.44
# Mc/sec: 1073.91
//
Query:       MMETSP1137-20121227|3826_1  [L=374]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (374 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       116  (0.0282789); expected 82.0 (0.02)
Passed bias filter:                      108  (0.0263286); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.16s 00:00:00.44 Elapsed: 00:00:00.43
# Mc/sec: 1148.00
//
Query:       MMETSP1137-20121227|3827_1  [L=654]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0069   13.5   7.5      0.012   12.7   5.2    1.5  1  TIGR03752 conj_TIGR03752: integrating conjugative element protein, PFL_4705 family


Domain annotation for each model (and alignments):
>> TIGR03752  conj_TIGR03752: integrating conjugative element protein, PFL_4705 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.7   5.2     3e-06     0.012      71     164 ..     361     451 ..     291     522 .. 0.81

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 3e-06
   TIGR03752  71 lrkelaklekeNeklkkenerlk..kreesvderiqqaleaekkelkkekeqlkeeqakleelldelqkkledvaaekesseedlpvglGleegdk 164
                 l+++l+k +++N++l ++ ++ +  ++++++++++qq+l+a ++++++  ++ +  q+++ ++ ++ q      +++    +++ pv+ G ++g+ 
  MMETSP1137-20121227|3827_1 361 LQQQLQKQQQQNQQLLQQLQQQQqlQQQQRLQQQLQQQLHALRQSAQRPPHAPQMPQRQMDQDRAQHQ-----YQTQPPPCQQSAPVSCGGTSGHA 451
                 67899999*****9988755544115668899999999999999999999998888888888766665.....44556666666666665555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (654 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       594  (0.144807); expected 82.0 (0.02)
Passed bias filter:                      249  (0.0607021); expected 82.0 (0.02)
Passed Vit filter:                        43  (0.0104827); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.69u 0.15s 00:00:00.84 Elapsed: 00:00:00.87
# Mc/sec: 992.19
//
Query:       MMETSP1137-20121227|3828_1  [L=72]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.017   11.8   0.0      0.017   11.8   0.0    1.0  1  TIGR00440 glnS: glutamine--tRNA ligase


Domain annotation for each model (and alignments):
>> TIGR00440  glnS: glutamine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   4.2e-06     0.017     458     489 ..       3      40 ..       1      66 [. 0.77

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 4.2e-06
   TIGR00440 458 eddflsvinpeslvikegvveqsladavaek......a 489
                 e d ++ +npesl++ +g+ve++la a a        +
  MMETSP1137-20121227|3828_1   3 EPDWVKLLNPESLIVHHGMVEPDLAAAAAPPhrhlrpT 40 
                 568899******************99988654455553 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        27  (0.00658216); expected 82.0 (0.02)
Passed bias filter:                       26  (0.00633837); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.14u 0.12s 00:00:00.26 Elapsed: 00:00:00.25
# Mc/sec: 380.13
//
Query:       MMETSP1137-20121227|3829_1  [L=127]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (127 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       353  (0.0860556); expected 82.0 (0.02)
Passed bias filter:                      181  (0.0441248); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.16s 00:00:00.37 Elapsed: 00:00:00.38
# Mc/sec: 441.12
//
Query:       MMETSP1137-20121227|3830_1  [L=50]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (50 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        29  (0.00706972); expected 82.0 (0.02)
Passed bias filter:                       28  (0.00682594); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.16s 00:00:00.27 Elapsed: 00:00:00.34
# Mc/sec: 194.10
//
Query:       MMETSP1137-20121227|3831_1  [L=93]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (93 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       100  (0.0243784); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.18s 00:00:00.31 Elapsed: 00:00:00.33
# Mc/sec: 371.97
//
Query:       MMETSP1137-20121227|3832_1  [L=175]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00035   16.2   9.3    0.00038   16.1   6.4    1.0  1  TIGR02168 SMC_prok_B: chromosome segregation protein SMC
     0.0051   12.3  10.2     0.0058   12.2   7.1    1.0  1  TIGR02169 SMC_prok_A: chromosome segregation protein SMC
  ------ inclusion threshold ------
      0.036   10.3   6.5      0.043   10.1   4.5    1.1  1  TIGR03185 DNA_S_dndD: DNA sulfur modification protein DndD
      0.058   11.6  14.1      0.079   11.2   0.6    2.5  2  TIGR02559 HrpB7: type III secretion protein HrpB7


Domain annotation for each model (and alignments):
>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   6.4   3.7e-07   0.00038     674     770 ..      49     142 ..       6     152 .. 0.55

  Alignments for each domain:
  == domain 1    score: 16.1 bits;  conditional E-value: 3.7e-07
   TIGR02168 674 ilerkkeieeleeeieeleekiaelekelkelekeleeleeeleklrkeleelerklselkkelerlekeveqleerlaqlekeleeleeereelee 770
                 +  r++eie+l++e++++ ++ ++l+k+l+ +++e+ + +++l++l ++++    k ++ + +l+  ++e+e+l+ +++++++ l+++++ ++e+++
  MMETSP1137-20121227|3832_1  49 LARREEEIERLQSELQMAVQREDSLRKKLSHVQNERGRDRQKLDNLSNNARV---KQQQIELDLRHWRNEAERLQGEVNKRDQWLKKARDIITEYQK 142
                 3334445555555555555555555555555555444444333333333333...233333445555555555555555555555555555555544 PP

>> TIGR02169  SMC_prok_A: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.2   7.1   5.6e-06    0.0058     359     460 ..      41     139 ..       4     148 .. 0.54

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 5.6e-06
   TIGR02169 359 elkelkeeleelraeleevdkeaaelreelkelkekleklkeelnelkreldrlleelkrleeelaelkaelerieekiaeleeeleelaeeikkaeqkleq 460
                 e++ + + l+  ++e+e ++ e + ++++ ++l++kl+++++e+   +++ld l   +++++ ++++++ +l + +++ + l+ e+++ ++ +kka+  + +
  MMETSP1137-20121227|3832_1  41 EVARRVDALARREEEIERLQSELQMAVQREDSLRKKLSHVQNERGRDRQKLDNL---SNNARVKQQQIELDLRHWRNEAERLQGEVNKRDQWLKKARDIITE 139
                 445555555666666666666666666666666666666666666555333333...333444444444444444444444444444444444444333333 PP

>> TIGR03185  DNA_S_dndD: DNA sulfur modification protein DndD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   4.5   4.2e-05     0.043     429     524 ..      41     136 ..       8     146 .. 0.48

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 4.2e-05
   TIGR03185 429 eleeaeeevakseveieektekleelkeaieelrkelkektkqkedaeelervikladkvkktleeFrekllerklqkleeeilksfkkLlrKsdl 524
                 e++     +a++e eie+++++l+ + ++ ++lrk+l + +++     ++   +   ++vk+   e   +  ++++++l+ e+ k  + L + +d+
  MMETSP1137-20121227|3832_1  41 EVARRVDALARREEEIERLQSELQMAVQREDSLRKKLSHVQNERGRDRQKLDNLSNNARVKQQQIELDLRHWRNEAERLQGEVNKRDQWLKKARDI 136
                 344444444444444444444444444444444444433333333333333334444444444444444444444444444444444444333333 PP

>> TIGR02559  HrpB7: type III secretion protein HrpB7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   4.5    0.0075       7.7      99     137 ..      39      77 ..      23      90 .. 0.81
   2 ?   11.2   0.6   7.7e-05     0.079      14      69 ..      99     154 ..      86     170 .. 0.82

  Alignments for each domain:
  == domain 1    score: 4.7 bits;  conditional E-value: 0.0075
   TIGR02559  99 raalqakedalaakkrkiaRldaqidvvrerierlrRae 137
                   ++++++dala ++ +i Rl++ +++  +r + lr++ 
  MMETSP1137-20121227|3832_1  39 DLEVARRVDALARREEEIERLQSELQMAVQREDSLRKKL 77 
                 56899**********************999999998874 PP

  == domain 2    score: 11.2 bits;  conditional E-value: 7.7e-05
   TIGR02559  14 trrderlraeleelraaleeadaelaekesqaeakedrldrhaarlddlatgtasl 69 
                 + +++ ++ +l++ r + e +++e++++ + +++++d + ++++r     +++ + 
  MMETSP1137-20121227|3832_1  99 RVKQQQIELDLRHWRNEAERLQGEVNKRDQWLKKARDIITEYQKRTIPPSGAQSPA 154
                 45788999**********************************99976666666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (175 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       240  (0.058508); expected 82.0 (0.02)
Passed bias filter:                      129  (0.0314481); expected 82.0 (0.02)
Passed Vit filter:                        23  (0.00560702); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.26u 0.14s 00:00:00.40 Elapsed: 00:00:00.40
# Mc/sec: 577.45
//
Query:       MMETSP1137-20121227|3833_1  [L=641]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   1.1e-214  712.3   0.0   1.3e-214  712.1   0.0    1.0  1  TIGR00204 dxs: 1-deoxy-D-xylulose-5-phosphate synthase
    1.2e-16   58.1   0.0    3.9e-09   33.2   0.0    4.0  4  TIGR00232 tktlase_bact: transketolase
    2.7e-09   34.2   1.4    4.8e-09   33.4   1.0    1.3  1  TIGR03181 PDH_E1_alph_x: pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit
    4.6e-08   30.2   0.1    1.1e-07   28.9   0.1    1.5  2  TIGR03182 PDH_E1_alph_y: pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit
     0.0011   15.1   0.1       0.13    8.4   0.3    2.9  3  TIGR03336 IOR_alpha: indolepyruvate ferredoxin oxidoreductase, alpha subunit


Domain annotation for each model (and alignments):
>> TIGR00204  dxs: 1-deoxy-D-xylulose-5-phosphate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  712.1   0.0  1.6e-217  1.3e-214      20     615 ..       2     634 ..       1     635 [. 0.92

  Alignments for each domain:
  == domain 1    score: 712.1 bits;  conditional E-value: 1.6e-217
   TIGR00204  20 klsdelrekllesvsasgGhlasglGvveltvalhkvfdtdkdkliwdvghqayahklltGrreelstlrqkkGlagfpkrseseydvlsaGhsstsisaglGiavaaelkgadekvvaviGdGaltaGmalealnhaGdlkkdllvilndn.emsi.........senvGalskalarllsgslyqslrdelkkilkklPevkekllerveeslkrlvvsgvlfeelGfnyiGPvdGhdlselietlknakklkg..PvllhvktkkGkGyklaekdtigfhgvgkfdlstGalkksksalpsyskifsdtllelakkdekivgitaamreGsgldklskkfPkryfdvaiaeqhavtlaaalaieGlkPvvaiystflqraydqvvhdvaiqklpvllaidraGivGadGethqGlfdisylrsiPnlvlmaPkdenelkqmlvtaleydegpialryPrGnavgv.........eltee....ekleiGksellrkged.......illlgfGtlveealevaeelkek..gieatvvdlrfvkPldeelikalakeieklvtleenvllGGvgsavaevlsdqn....vlvpvkrlgipdefiehgtqeevlaelGldteqlaekilall 615
                 +l+ elr   +++vs++gGhl+s+lGvveltvalh+vf+++ d++iwdv+hq y+hk+ltGrr+ ++tlrq  Gl+gf+krseseyd + aGhs+tsisa+lG+ava++l+g +++ va+iGdGa+t+Gma+ea+n+a  l+ +++v+ ndn ++s+         + + G+ls + +rl+ +  +q +rd +k+i k  P+  +++  +++e  +++++ g+lfeelGf yiGPvdGhdl++l+  l+n+++  g  Pvllh+kt+kG Gy +ae  + ++hgv+kf++stG+  +s s++psy+ +f+d l+++a++d  +v+itaam+ G+g+dk+ ++fPkr fdv+iaeqhavt+aa+la+eG+kP+ aiystflqraydqvvhd aiqk+pv + +draG+vG+dG+th G fd++yl +iPnlv+ aP+de elk+m +t +e d+ p+ lryPrG+a+g          elte     e ++iGk ++lr+ +        i++l+ Gt +  a+++a +l ++  +i +tv d+rf+kPld++l+ +la+e++ l+t+ee+ + GG+g  v+ +l  ++     +  v+ + +pd++ie + q+e  +e Gl+++ +++  l+ll
  MMETSP1137-20121227|3833_1   2 QLAYELRWETINAVSKTGGHLGSSLGVVELTVALHYVFNAPADPIIWDVSHQVYPHKILTGRRDRMHTLRQAGGLSGFAKRSESEYDCFGAGHSTTSISAALGMAVAHDLRGMKRNSVAIIGDGAITGGMAYEAMNNAAYLNSRVIVVYNDNgQVSLptgtpsaggTAPAGSLSAYTSRLIASRPFQDVRDXAKRINKLFPTTIQQTNAKLDEFARGMMTGGTLFEELGFLYIGPVDGHDLDNLVPILENIRDRGGdkPVLLHIKTEKGYGYPPAEAASDKYHGVPKFEVSTGKKLSSPSKTPSYTSVFADQLIDIAAEDRSVVAITAAMPGGTGIDKFGRRFPKRTFDVGIAEQHAVTFAAGLAVEGIKPFCAIYSTFLQRAYDQVVHDCAIQKIPVRFILDRAGLVGNDGPTHHGSFDLAYLGCIPNLVICAPSDEIELKRMTQTVYEIDNLPSVLRYPRGSALGLdvlndllgyELTEMpakvEAVPIGKGRVLRSADSdkeatsrIAILSIGTRLAPAMHAARALTRRdsTIGVTVADARFMKPLDSDLVSKLAREHDVLITVEEGSI-GGFGDHVLHFLALNGflddGKLKVRPMVLPDTYIEAAGQHEQYEEAGLTERFIEATALKLL 634
                 68899***************************************************************************************************************************************************5466633323222235789********************************************************************************9975444**************************************************************************************************************************************************************************************************************9876112222222344334347899*********865223334449******************976522799********************************986.9**********988832223457999************************99998877665 PP

>> TIGR00232  tktlase_bact: transketolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.0     0.024        20       2      39 ..       2      38 ..       1      49 [. 0.80
   2 !    7.8   0.0   0.00024       0.2     145     185 ..     118     158 ..      96     184 .. 0.83
   3 !   10.5   0.0   3.6e-05     0.029     201     262 ..     226     289 ..     212     314 .. 0.86
   4 !   33.2   0.0   4.8e-12   3.9e-09     396     515 ..     346     464 ..     335     572 .. 0.88

  Alignments for each domain:
  == domain 1    score: 1.2 bits;  conditional E-value: 0.024
   TIGR00232  2 klvnairlLavdaiekaksGhpGaplGlapiaevlwkk 39
                +l++ +r  +++a++k  +Gh G +lG+ ++ ++l+  
  MMETSP1137-20121227|3833_1  2 QLAYELRWETINAVSKT-GGHLGSSLGVVELTVALHYV 38
                667788999999*9995.9*********9999888654 PP

  == domain 2    score: 7.8 bits;  conditional E-value: 0.00024
   TIGR00232 145 tyvlvGDGdlqeGisseaaslaGhlkLgkLivlyDsn.kisi 185
                   +++GDG +  G+++ea + a  l+  ++iv+y++n ++s+
  MMETSP1137-20121227|3833_1 118 SVAIIGDGAITGGMAYEAMNNAAYLN-SRVIVVYNDNgQVSL 158
                 5689****************998887.678888877735666 PP

  == domain 3    score: 10.5 bits;  conditional E-value: 3.6e-05
   TIGR00232 201 feaygWevlevedgedleeikkaiekakks.kdkPtlikvktiigfgsp.nkegteevhgaplk 262
                 fe  g+ ++   dg+dl+++   +e+ +    dkP l+++kt  g+g p  ++ + + hg p  
  MMETSP1137-20121227|3833_1 226 FEELGFLYIGPVDGHDLDNLVPILENIRDRgGDKPVLLHIKTEKGYGYPpAEAASDKYHGVPKF 289
                 99999*********************9976269**************86256677889998864 PP

  == domain 4    score: 33.2 bits;  conditional E-value: 4.8e-12
   TIGR00232 396 gnyiryGvRefamgaimngialhGglkpygatFlvFvdYak.paiRlaaLmklkviyvythDsigvGeDGpthqpveqlaslRaipnlsvwRPaDeketaaayklalesqdaptvlilsRq 515
                 ++ + +G+ e    + + g+a+ G +kp++a + +F + a  + +   a+ k +v +++      vG+DGpth+    la l  ipnl +  P+De e     ++  e ++ p+vl   R 
  MMETSP1137-20121227|3833_1 346 KRTFDVGIAEQHAVTFAAGLAVEG-IKPFCAIYSTFLQRAYdQVVHDCAIQKIPVRFILDRAG-LVGNDGPTHHGSFDLAYLGCIPNLVICAPSDEIELKRMTQTVYEIDNLPSVLRYPRG 464
                 566889****999999*****986.89****99999987751567889**********97655.49**********************************999999999999999988775 PP

>> TIGR03181  PDH_E1_alph_x: pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.4   1.0   5.8e-12   4.8e-09     126     190 ..      97     160 ..      94     169 .. 0.88

  Alignments for each domain:
  == domain 1    score: 33.4 bits;  conditional E-value: 5.8e-12
   TIGR03181 126 tqvlhAaGvAlalklkgekevavayiGdGgtsegdfyealnfAavfkapvvfvvqNNqwAISvpr 190
                 t+++ A G+A+a  l+g k+ +va+iGdG+   g  yea+n Aa  +  v++v + N+  +S p+
  MMETSP1137-20121227|3833_1  97 TSISAALGMAVAHDLRGMKRNSVAIIGDGAITGGMAYEAMNNAAYLNSRVIVVYNDNG-QVSLPT 160
                 67899*******************************************9998888886.466666 PP

>> TIGR03182  PDH_E1_alph_y: pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.9   0.1   1.3e-10   1.1e-07     108     171 ..      91     154 ..      74     165 .. 0.90
   2 ?   -3.5   0.0         1   8.4e+02     201     235 ..     237     269 ..     236     273 .. 0.75

  Alignments for each domain:
  == domain 1    score: 28.9 bits;  conditional E-value: 1.3e-10
   TIGR03182 108 GhgivgaqvplatGlafaekykkedevtlaffGdgavnqGqvyEslnlaalwklPvifviennk 171
                 G g  +  ++ a G+a a+ +++ ++ ++a++Gdga+  G  yE++n aa  +  vi v ++n 
  MMETSP1137-20121227|3833_1  91 GAGHSTTSISAALGMAVAHDLRGMKRNSVAIIGDGAITGGMAYEAMNNAAYLNSRVIVVYNDNG 154
                 45556788999**********************************************9998884 PP

  == domain 2    score: -3.5 bits;  conditional E-value: 1
   TIGR03182 201 vdGmdvlavreaakeavervragkgPvllelktyR 235
                 vdG d+ +     +++ +  r g++Pvll +kt +
  MMETSP1137-20121227|3833_1 237 VDGHDLDNLVPILENIRD--RGGDKPVLLHIKTEK 269
                 677777777777776655..78999*****99975 PP

>> TIGR03336  IOR_alpha: indolepyruvate ferredoxin oxidoreductase, alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.4   0.3   0.00015      0.13     407     471 ..      97     167 ..      87     179 .. 0.76
   2 ?    1.4   0.0     0.021        17      50     150 ..     350     453 ..     321     462 .. 0.66
   3 ?    0.7   0.0     0.033        27     253     287 ..     536     570 ..     501     574 .. 0.70

  Alignments for each domain:
  == domain 1    score: 8.4 bits;  conditional E-value: 0.00015
   TIGR03336 407 asigvasGlska....kekkrivatiGDstffhaGl..psLinavynkanivvviLDn.ritamtGeqpnPg 471
                 +si++a G++ a    + k++ va+iGD +    G+  +++ na y +++++vv  Dn ++   tG+ +  g
  MMETSP1137-20121227|3833_1  97 TSISAALGMAVAhdlrGMKRNSVAIIGDGAI-TGGMayEAMNNAAYLNSRVIVVYNDNgQVSLPTGTPSAGG 167
                 578888888888555467899*******985.5666337999***************934555577655555 PP

  == domain 2    score: 1.4 bits;  conditional E-value: 0.021
   TIGR03336  50 efsvnekvalevalgaalaGvralvtmkhvGlnvaaDslmt.vaYtGvkgglvv.....vvaDDPsahssqneqDtrayakfakiPvlePsspqeakdlvkyafels 150
                 +    e+ a+  a+g a+ G++ ++++    l  a D ++   a   +   +++     v  D P+ h s    D   +  + ++ +  Ps+  e k +++  +e+ 
  MMETSP1137-20121227|3833_1 350 DVGIAEQHAVTFAAGLAVEGIKPFCAIYSTFLQRAYDQVVHdCAIQKIPVRFILdraglVGNDGPTHHGSF---DLAYLGCIPNLVICAPSDEIELKRMTQTVYEID 453
                 45566778888888888888888888888888888887764244445555555322221455667777764...555555666666778888888888888888875 PP

  == domain 3    score: 0.7 bits;  conditional E-value: 0.033
   TIGR03336 253 gvevsvlkiGlayPlpeelveeflekveevlvvee 287
                  + v+v+   +  Pl+++lv++++++++ ++ vee
  MMETSP1137-20121227|3833_1 536 TIGVTVADARFMKPLDSDLVSKLAREHDVLITVEE 570
                 3457777777889***************9999999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (641 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       131  (0.0319356); expected 82.0 (0.02)
Passed bias filter:                      126  (0.0307167); expected 82.0 (0.02)
Passed Vit filter:                        24  (0.0058508); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.53u 0.13s 00:00:00.66 Elapsed: 00:00:00.65
# Mc/sec: 1301.62
//
Query:       MMETSP1137-20121227|3834_1  [L=207]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (207 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        39  (0.00950756); expected 82.0 (0.02)
Passed bias filter:                       34  (0.00828864); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.15s 00:00:00.32 Elapsed: 00:00:00.30
# Mc/sec: 910.72
//
Query:       MMETSP1137-20121227|3835_1  [L=421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (421 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        76  (0.0185275); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.16s 00:00:00.44 Elapsed: 00:00:00.76
# Mc/sec: 731.15
//
Query:       MMETSP1137-20121227|3836_1  [L=100]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (100 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       129  (0.0314481); expected 82.0 (0.02)
Passed bias filter:                      117  (0.0285227); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.16s 00:00:00.33 Elapsed: 00:00:00.50
# Mc/sec: 263.98
//
Query:       MMETSP1137-20121227|3837_1  [L=769]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-10   37.5   4.0    6.3e-05   18.8   0.2    3.1  3  TIGR02917 PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein
    3.6e-06   24.5   5.3      0.049   11.0   1.0    4.2  4  TIGR02521 type_IV_pilW: type IV pilus biogenesis/stability protein PilW
    0.00062   17.3   1.9       0.25    8.9   0.0    3.5  3  TIGR02552 LcrH_SycD: type III secretion low calcium response chaperone LcrH/SycD
     0.0026   13.8   0.1     0.0026   13.8   0.0    2.6  3  TIGR03939 PGA_TPR_OMP: poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA


Domain annotation for each model (and alignments):
>> TIGR02917  PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   5.9e-07   0.00061     504     663 ..      71     233 ..      65     307 .. 0.86
   2 !   18.8   0.2   6.2e-08   6.3e-05     478     642 ..     292     459 ..     280     511 .. 0.67
   3 !    2.1   0.7     0.007       7.2     129     171 ..     542     584 ..     532     592 .. 0.91

  Alignments for each domain:
  == domain 1    score: 15.6 bits;  conditional E-value: 5.9e-07
   TIGR02917 504 nLArldlqekniddAkqrfekvlaidpknlkallaLaelaarkgneeeavallekaaekdpkelepalaLaqyylskg..elkkalaileeaadlapdspellellgraql..aakdlkkavesfkkllelqpdsalalllladvyavaknkakAltslkkaLe 663
                 ++A+l   ekn  +A+  +  +   +p   ++ l++a++++++g+ +   ++l++  +  p  +++ l+ ++++++ g  el  a ++l ++  +   +++   ll  a+l   a++ + a++ fk ll+++p  ++   ++  + ++ +  ++Al +++++L 
  MMETSP1137-20121227|3837_1  71 EMADLSKREKNFSEARRLYRLATELQPSAPQTWLEYAKMEEERGHFDRCQRILTAGLHHCPYHEALMLKGIKHLERMGxdELRMARSLLSQLYSVP-INQSWRTLLEGALLeaRAGQTDTARRIFKFLLQQAPWYGPVWHEACRFEQRCNHMQEALHVAESGLV 233
                 789999**************************************************9999999999999999998765337888999998887764.4444444444444311579999**************************************9999985 PP

  == domain 2    score: 18.8 bits;  conditional E-value: 6.2e-08
   TIGR02917 478 kkdlakAreafekALkiepdffpAlanL..ArldlqekniddAkqrfekvlaidpknlkallaL..aelaarkgneeeavallekaaekdpkelepalaLaqyylskgelkkalaileeaadlapdspellellgraqlaakdlkkavesfkkllelqpdsalalllla 642
                 +++l++Ar+a+ k+     +++   + L  Ar +l   + + +++ +e++ +++p   +a+  L  ++l +  gn e++ +ll  a + + +e +  l+ +   l++++ ++al+ +++a+++++ + +l+++l ++  a + ++  + +f+++l + p+s++   + a
  MMETSP1137-20121227|3837_1 292 NGNLQRARAAYVKSVATCAANLRWKVWLggARTELCHSQFAVSQALLEQAYKESPPKTRAIVMLeqSRLHELCGNAEQSRKLLRGARKTNRQEWKVFLESVLLELRSQDMQRALKEAHQALKVHRGTGRLWAVLIQLEHAHG-VRRQLGVFQQALLEVPKSGEVWCEGA 459
                 4555555555555555555554444433336666666677777788888888888888776555336777777888888888888888888888877777777778888888888888888888888888888877776666.44557788888888888777666555 PP

  == domain 3    score: 2.1 bits;  conditional E-value: 0.007
   TIGR02917 129 alrglAaLglgeleeAqksleqAlaiapksleaklglAqlala 171
                 +++g ++L ++el e ++ +e+A + a+++  +++++A +a+a
  MMETSP1137-20121227|3837_1 542 VMQGATELLQRELREYRHVYESAVKRAETAEFSQAASAAVAAA 584
                 679***********************************99986 PP

>> TIGR02521  type_IV_pilW: type IV pilus biogenesis/stability protein PilW
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.6   0.0   0.00026      0.26     145     193 ..      76     124 ..      63     156 .. 0.85
   2 ?    2.2   0.0     0.023        23     132     188 ..     168     224 ..     149     230 .. 0.79
   3 !   11.0   1.0   4.8e-05     0.049     109     229 ..     326     445 ..     284     448 .. 0.81
   4 ?   -0.2   0.0      0.12   1.3e+02     152     217 ..     473     538 ..     468     554 .. 0.74

  Alignments for each domain:
  == domain 1    score: 8.6 bits;  conditional E-value: 0.00026
   TIGR02521 145 alkagdtekaekyltralkidpkrpesllelaelklkkgqyaeAralle 193
                 +++++++ +a+   + a++++p+ p++ le a+++ ++g+  + + +l 
  MMETSP1137-20121227|3837_1  76 SKREKNFSEARRLYRLATELQPSAPQTWLEYAKMEEERGHFDRCQRILT 124
                 688999*********************************9998887775 PP

  == domain 2    score: 2.2 bits;  conditional E-value: 0.023
   TIGR02521 132 eqparsyeNaglcalkagdtekaekyltralkidpkrpesllelaelklkkgqyaeA 188
                 +q +r++   +l  ++ag+t+ a+  ++ +l++ p + +   e  + +    +++eA
  MMETSP1137-20121227|3837_1 168 NQSWRTLLEGALLEARAGQTDTARRIFKFLLQQAPWYGPVWHEACRFEQRCNHMQEA 224
                 5778888889999999************99999998888777776666665555555 PP

  == domain 3    score: 11.0 bits;  conditional E-value: 4.8e-05
   TIGR02521 109 LcqqkkyeeAeqqfeaAiedpkYeqparsyeNaglcalkagdtekaekyltralkidpkrpesllelaelklkkgqyaeAralleryqqtveqtaesLwLgiriakalgdaaaakeyeaqL 229
                 Lc+ + +   ++ +e+A+++   +++a++           g++e+ +k l+ a k ++++ + +le + l+l  +++++A +  ++  ++   t +  ++ i++++a g + +   +++ L
  MMETSP1137-20121227|3837_1 326 LCHSQFAV-SQALLEQAYKESPPKTRAIVMLEQSRLHELCGNAEQSRKLLRGARKTNRQEWKVFLESVLLELRSQDMQRALKEAHQALKVHRGTGRLWAVLIQLEHAHGVRRQLGVFQQAL 445
                 78776444.489999***99999999999999999999***************************************99999888887777777777778899999999888887777766 PP

  == domain 4    score: -0.2 bits;  conditional E-value: 0.12
   TIGR02521 152 ekaekyltralkidpkrpesllelaelklkkgqyaeAralleryqqtveqtaesLwLgiriakalg 217
                 + a++ l  a++  p++ +s+ e  +l++  +   e  + l +    +e++  +Lw   +    l 
  MMETSP1137-20121227|3837_1 473 KAAHNFLDFAIEFTPQYGDSFIEYLRLQMLMKAPEEEIERLWQLCINAEPNYGTLWFHCKSSVLLT 538
                 667888888999999999999999999999888777777777777777888888887776655555 PP

>> TIGR02552  LcrH_SycD: type III secretion low calcium response chaperone LcrH/SycD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.9   0.0   0.00025      0.25      52      95 ..      66     109 ..      61     135 .. 0.82
   2 !    5.4   0.0    0.0029         3      31      73 ..     184     226 ..     171     235 .. 0.92
   3 ?   -1.7   0.0      0.45   4.6e+02      54      77 ..     281     304 ..     277     357 .. 0.75

  Alignments for each domain:
  == domain 1    score: 8.9 bits;  conditional E-value: 0.00025
   TIGR02552  52 akywlgLaaclqalkeyeeAiaaYalaaaldlddprpvyhaaec 95 
                 ++ +l +a   ++ k+++eA+  Y la+ l++++p+  ++ a+ 
  MMETSP1137-20121227|3837_1  66 WRVHLEMADLSKREKNFSEARRLYRLATELQPSAPQTWLEYAKM 109
                 66778888899999**********************99888765 PP

  == domain 2    score: 5.4 bits;  conditional E-value: 0.0029
   TIGR02552  31 qgkyeeAeklFqlLaaldpteakywlgLaaclqalkeyeeAia 73 
                 +g+ ++A+++F++L +  p+    w       q++++++eA++
  MMETSP1137-20121227|3837_1 184 AGQTDTARRIFKFLLQQAPWYGPVWHEACRFEQRCNHMQEALH 226
                 79999******************99999999999999999987 PP

  == domain 3    score: -1.7 bits;  conditional E-value: 0.45
   TIGR02552  54 ywlgLaaclqalkeyeeAiaaYal 77 
                  w+  a +  + ++ ++A+aaY  
  MMETSP1137-20121227|3837_1 281 LWFESAQVEERNGNLQRARAAYVK 304
                 566667777777777777777743 PP

>> TIGR03939  PGA_TPR_OMP: poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.0   2.5e-06    0.0026      98     151 ..      78     131 ..      68     176 .. 0.81
   2 ?   -1.8   0.0      0.14   1.4e+02     538     558 ..     160     180 ..     155     196 .. 0.69
   3 ?   -1.1   1.2     0.083        85     431     502 ..     281     354 ..     256     431 .. 0.71

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 2.5e-06
   TIGR03939  98 nekqwdkAlelyrkllqrdPknpdlllGlaltladagkdeeAlkalkelkerfp 151
                 +ek++++A  lyr +++ +P+ p+ +l +a+++ + g+ ++ +  l++  +  p
  MMETSP1137-20121227|3837_1  78 REKNFSEARRLYRLATELQPSAPQTWLEYAKMEEERGHFDRCQRILTAGLHHCP 131
                 79***************************************9999988776666 PP

  == domain 2    score: -1.8 bits;  conditional E-value: 0.14
   TIGR03939 538 arLySpplaegwrvFaggsys 558
                 ++LyS p++++wr    g   
  MMETSP1137-20121227|3837_1 160 SQLYSVPINQSWRTLLEGALL 180
                 689999999999987666554 PP

  == domain 3    score: -1.1 bits;  conditional E-value: 0.083
   TIGR03939 431 lrlalaeveraRgwprrAeqllkkaeslepdslsaer..gqaetaldlqewrqaealiddlvaryPedkqvqrL 502
                 l+ + a+ve+  g+ +rA  ++ k  +   ++l  ++  g a t l   +++  +al+++  +++P +  +  +
  MMETSP1137-20121227|3837_1 281 LWFESAQVEERNGNLQRARAAYVKSVATCAANLRWKVwlGGARTELCHSQFAVSQALLEQAYKESPPKTRAIVM 354
                 67777777777777777777777777774444444442266777777777777777777777777666544333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (769 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       113  (0.0275475); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.63u 0.16s 00:00:00.79 Elapsed: 00:00:01.18
# Mc/sec: 860.17
//
Query:       MMETSP1137-20121227|3838_1  [L=232]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (232 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        63  (0.0153584); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.15s 00:00:00.35 Elapsed: 00:00:00.32
# Mc/sec: 956.92
//
Query:       MMETSP1137-20121227|3839_1  [L=89]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (89 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        62  (0.0151146); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.12s 00:00:00.25 Elapsed: 00:00:00.26
# Mc/sec: 451.81
//
Query:       MMETSP1137-20121227|3840_1  [L=357]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (357 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       211  (0.0514383); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.14s 00:00:00.43 Elapsed: 00:00:00.31
# Mc/sec: 1520.00
//
Query:       MMETSP1137-20121227|3841_1  [L=156]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.44    5.9  15.2        0.5    5.7  10.6    1.0  1  TIGR00927 2A1904: K+-dependent Na+/Ca+ exchanger


Domain annotation for each model (and alignments):
>> TIGR00927  2A1904: K+-dependent Na+/Ca+ exchanger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7  10.6   0.00012       0.5     854     957 ..      42     141 ..      28     154 .. 0.77

  Alignments for each domain:
  == domain 1    score: 5.7 bits;  conditional E-value: 0.00012
   TIGR00927 854 kededegeieakeevevegdedeteieaeeeaevkededeGeieaeedgevkGdegeeqkveaeeeeeedekdegeedeeeiaddeevkdetgeqelnaenqge 957
                 + +e e ei+a+++  ++g++     +    + v  + +eGe +a++++e   +e+eeq+ e+++++++  ++e     e +a d+++k+e  e+ ++a+++++
  MMETSP1137-20121227|3841_1  42 VVEEMEMEIDAENAEMRRGENG----KETVRSSVGYQLKEGESDADDGSESAREEDEEQTWESDSDDGAAAEKEAARRAELRAMDDHAKGELIEEVVEAHSKAD 141
                 4455677888855555566642....233455666778999999999999999999999999999999999999999999999999999998888888777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (156 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       208  (0.050707); expected 82.0 (0.02)
Passed bias filter:                      126  (0.0307167); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.20u 0.14s 00:00:00.34 Elapsed: 00:00:00.54
# Mc/sec: 381.30
//
Query:       MMETSP1137-20121227|3842_1  [L=218]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.6e-08   30.2   0.0    5.6e-08   30.0   0.0    1.1  1  TIGR02715 amido_AtzE: amidohydrolase, AtzE family


Domain annotation for each model (and alignments):
>> TIGR02715  amido_AtzE: amidohydrolase, AtzE family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.0   0.0   1.4e-11   5.6e-08       2      80 ..     143     218 .]     142     218 .] 0.89

  Alignments for each domain:
  == domain 1    score: 30.0 bits;  conditional E-value: 1.4e-11
   TIGR02715   2 iveiakavrsgkvsaravaeaalarikaadellnaftavtaeralaeaaridaelaaGkelgalagvPfavknlfdvaG 80 
                 + e++  +rsg+++a+++++ ala +++ d++ n f +     al +aa  da+ aaG+  + + g+Pfa+k+ fd+ G
  MMETSP1137-20121227|3842_1 143 VLEMQSLLRSGQITATELTNIALAMLQKYDAEYN-FDHF--RDALEKAAEADAKFAAGQYDSFVQGIPFAIKDTFDLSG 218
                 56788899**********************9987.4443..4688899999*************************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (218 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        71  (0.0173086); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.20u 0.15s 00:00:00.35 Elapsed: 00:00:00.35
# Mc/sec: 822.10
//
Query:       MMETSP1137-20121227|3843_1  [L=585]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (585 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       192  (0.0468064); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.17s 00:00:00.54 Elapsed: 00:00:00.32
# Mc/sec: 2412.93
//
Query:       MMETSP1137-20121227|3845_1  [L=185]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (185 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       101  (0.0246221); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.12s 00:00:00.32 Elapsed: 00:00:00.32
# Mc/sec: 763.06
//
Query:       MMETSP1137-20121227|3846_1  [L=235]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (235 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       285  (0.0694783); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.13s 00:00:00.36 Elapsed: 00:00:00.53
# Mc/sec: 585.23
//
Query:       MMETSP1137-20121227|3847_1  [L=54]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        14  (0.00341297); expected 82.0 (0.02)
Passed bias filter:                       14  (0.00341297); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.51
# Mc/sec: 139.75
//
Query:       MMETSP1137-20121227|3848_1  [L=193]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (193 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        43  (0.0104827); expected 82.0 (0.02)
Passed bias filter:                       35  (0.00853242); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.15s 00:00:00.32 Elapsed: 00:00:00.36
# Mc/sec: 707.61
//
Query:       MMETSP1137-20121227|3849_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        33  (0.00804486); expected 82.0 (0.02)
Passed bias filter:                       29  (0.00706972); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.10s 00:00:00.22 Elapsed: 00:00:00.49
# Mc/sec: 137.38
//
Query:       MMETSP1137-20121227|3850_1  [L=702]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.9e-66  221.0   0.8    1.2e-65  220.0   0.0    1.8  1  TIGR03719 ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family
    7.6e-38  128.5   0.0    5.1e-15   53.2   0.0    4.0  3  TIGR02857 CydD: thiol reductant ABC exporter, CydD subunit
    1.1e-34  117.7   0.0    3.8e-13   46.4   0.0    4.1  3  TIGR03375 type_I_sec_LssB: type I secretion system ATPase
    1.8e-32  110.4   0.0    7.7e-11   39.5   0.0    4.3  4  TIGR03873 F420-0_ABC_ATP: proposed F420-0 ABC transporter, ATP-binding protein
    6.2e-32  108.7   0.8    1.6e-09   34.8   0.0    4.2  4  TIGR02868 CydC: thiol reductant ABC exporter, CydC subunit
    1.1e-30  104.8   0.0    2.9e-15   54.4   0.0    4.4  3  TIGR03740 galliderm_ABC: lantibiotic protection ABC transporter, ATP-binding subunit
    5.9e-30  102.4   2.8    2.3e-11   41.4   0.0    4.9  5  TIGR01188 drrA: daunorubicin resistance ABC transporter, ATP-binding protein
    6.3e-30  102.3   0.0    2.4e-09   35.0   0.0    4.2  4  TIGR02673 FtsE: cell division ATP-binding protein FtsE
    1.1e-28   98.3   0.0    1.8e-09   35.5   0.0    4.2  4  TIGR00960 3a0501s02: type II secretory pathway family protein
    1.1e-27   94.5   0.0    2.8e-08   31.3   0.0    4.6  4  TIGR01166 cbiO: cobalt ABC transporter, ATP-binding protein
    3.6e-27   92.7   0.0    3.3e-12   43.3   0.0    4.0  4  TIGR00958 3a01208: antigen peptide transporter 2
    1.8e-26   90.8   0.0    4.3e-10   37.3   0.0    4.3  4  TIGR02211 LolD_lipo_ex: lipoprotein releasing system, ATP-binding protein
    3.2e-26   89.9   0.0    1.3e-06   25.9   0.0    4.6  4  TIGR03608 L_ocin_972_ABC: putative bacteriocin export ABC transporter, lactococcin 972 group
    1.1e-25   88.3   0.0    2.5e-08   31.5   0.0    4.2  4  TIGR03864 PQQ_ABC_ATP: ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system
    1.2e-25   87.9   0.0    2.3e-08   30.9   0.0    4.4  4  TIGR01842 type_I_sec_PrtD: type I secretion system ATPase
    5.9e-25   86.1   0.0    1.5e-10   38.9   0.0    4.2  4  TIGR02769 nickel_nikE: nickel import ATP-binding protein NikE
    6.2e-25   85.3   0.0    2.8e-08   30.2   0.0    4.1  4  TIGR03796 NHLM_micro_ABC1: NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein
    7.2e-25   85.9   0.0    1.1e-09   36.0   0.0    4.0  3  TIGR03522 GldA_ABC_ATP: gliding motility-associated ABC transporter ATP-binding subunit GldA
    1.2e-24   84.9   0.0    2.4e-12   44.8   0.0    4.2  3  TIGR01189 ccmA: heme ABC exporter, ATP-binding protein CcmA
      4e-24   83.2   0.0    6.2e-07   26.9   0.0    4.2  4  TIGR03410 urea_trans_UrtE: urea ABC transporter, ATP-binding protein UrtE
    4.4e-24   83.1   0.0    3.3e-12   44.2   0.0    4.4  3  TIGR02315 ABC_phnC: phosphonate ABC transporter, ATP-binding protein
    3.9e-23   79.7   0.0    4.6e-11   40.1   0.0    3.4  3  TIGR01288 nodI: nodulation ABC transporter NodI
    6.9e-23   79.2   0.0    4.8e-08   30.6   0.0    4.2  4  TIGR00968 3a0106s01: sulfate ABC transporter, ATP-binding protein
    6.9e-23   78.9   0.0    2.1e-12   44.3   0.0    4.0  4  TIGR02204 MsbA_rel: ABC transporter, permease/ATP-binding protein
      9e-23   78.4   0.0    3.9e-10   36.7   0.0    4.1  4  TIGR03269 met_CoM_red_A2: methyl coenzyme M reductase system, component A2
    2.6e-22   77.3   0.0    2.5e-09   34.9   0.0    4.5  4  TIGR02982 heterocyst_DevA: ABC exporter ATP-binding subunit, DevA family
    2.7e-22   77.3   0.0    2.9e-06   24.9   0.0    4.2  4  TIGR01277 thiQ: thiamine ABC transporter, ATP-binding protein
    3.1e-22   77.1   0.0    1.2e-08   32.4   0.0    4.5  4  TIGR02142 modC_ABC: molybdate ABC transporter, ATP-binding protein
    5.3e-22   76.2   0.0    1.2e-05   22.7   0.0    4.4  4  TIGR01978 sufC: FeS assembly ATPase SufC
    1.2e-21   75.3   0.0    3.9e-07   27.8   0.0    4.2  4  TIGR03771 anch_rpt_ABC: anchored repeat-type ABC transporter, ATP-binding subunit
    1.6e-21   74.6   0.0    9.4e-07   26.2   0.0    4.7  5  TIGR00972 3a0107s01c2: phosphate ABC transporter, ATP-binding protein
    7.6e-21   72.4   0.0    6.8e-08   30.0   0.0    4.3  4  TIGR02770 nickel_nikD: nickel import ATP-binding protein NikD
    4.4e-20   69.3   0.0    1.2e-08   31.6   0.0    4.2  3  TIGR01846 type_I_sec_HlyB: type I secretion system ATPase
    6.7e-20   69.2   0.0    1.9e-08   31.6   0.0    4.2  4  TIGR03005 ectoine_ehuA: ectoine/hydroxyectoine ABC transporter, ATP-binding protein EhuA
      2e-19   67.4   0.0    2.2e-07   27.5   0.0    4.1  4  TIGR03797 NHLM_micro_ABC2: NHLM bacteriocin system ABC transporter, ATP-binding protein
    4.2e-19   66.7   0.0    1.5e-06   25.6   0.0    4.2  4  TIGR02324 CP_lyasePhnL: phosphonate C-P lyase system protein PhnL
    8.5e-19   65.4   0.0    1.8e-06   24.7   0.0    4.2  4  TIGR00955 3a01204: pigment precursor permease
    9.9e-19   65.6   0.0    4.8e-08   30.4   0.0    4.2  4  TIGR03265 PhnT2: putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein
    1.5e-18   65.2   0.0    2.2e-05   22.1   0.0    4.6  4  TIGR03411 urea_trans_UrtD: urea ABC transporter, ATP-binding protein UrtD
    1.8e-18   64.1   0.0    4.1e-08   30.0   0.0    4.2  4  TIGR02203 MsbA_lipidA: lipid A export permease/ATP-binding protein MsbA
    2.4e-18   64.1   0.0    3.5e-06   24.1   0.0    4.1  4  TIGR03258 PhnT: 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT
    3.9e-17   60.1   0.1    2.6e-08   31.1   0.0    5.0  5  TIGR01187 potA: polyamine ABC transporter, ATP-binding protein
    4.3e-17   59.7   0.0    1.9e-07   27.8   0.0    3.9  3  TIGR01193 bacteriocin_ABC: ABC-type bacteriocin transporter
    4.2e-16   56.7   0.0    2.3e-06   24.7   0.0    4.1  4  TIGR02314 ABC_MetN: D-methionine ABC transporter, ATP-binding protein
      7e-16   56.1   0.0    1.5e-05   22.1   0.0    4.2  4  TIGR01186 proV: glycine betaine/L-proline transport ATP binding subunit
    1.7e-15   55.0   0.0    8.6e-07   26.6   0.0    4.5  4  TIGR01184 ntrCD: nitrate ABC transporter, ATP-binding proteins C and D
    5.8e-15   52.5   0.0     0.0001   18.7   0.0    4.2  4  TIGR02633 xylG: D-xylose ABC transporter, ATP-binding protein
    1.1e-13   48.4   0.1    0.00014   18.3   0.0    4.3  3  TIGR00954 3a01203: peroxysomal long chain fatty acyl transporter
    2.9e-12   43.8   0.0    1.6e-05   21.6   0.0    3.2  3  TIGR01192 chvA: glucan exporter ATP-binding protein
    2.9e-12   44.4   0.0     0.0045   14.3   0.0    4.2  4  TIGR02323 CP_lyasePhnK: phosphonate C-P lyase system protein PhnK
    4.2e-11   38.9   0.0    0.00021   16.7   0.0    3.5  3  TIGR01271 CFTR_protein: cystic fibrosis transmembrane conductor regulator (CFTR)
    1.8e-07   28.3   5.0    0.00091   16.1   0.0    4.4  5  TIGR03415 ABC_choXWV_ATP: choline ABC transporter, ATP-binding protein
    3.1e-05   18.8   0.0      0.015    9.8   0.0    2.7  2  TIGR01257 rim_protein: rim ABC transporter
    7.7e-05   18.1   4.3      0.012   10.8   0.0    3.1  3  TIGR00957 MRP_assoc_pro: multi drug resistance-associated protein (MRP)
    0.00012   18.6   0.0     0.0046   13.4   0.0    2.9  3  TIGR01194 cyc_pep_trnsptr: cyclic peptide transporter
    0.00057   15.4   2.0       0.61    5.4   0.0    3.7  4  TIGR00956 3a01205: pleiotropic drug resistance family protein
     0.0019   14.8   0.0      0.038   10.5   0.0    2.2  2  TIGR02546 III_secr_ATP: type III secretion apparatus H+-transporting two-sector ATPase
     0.0025   15.4   0.0       0.18    9.4   0.0    2.6  2  TIGR00231 small_GTP: small GTP-binding protein domain
      0.003   14.2   0.0       0.11    9.2   0.0    2.2  2  TIGR03496 FliI_clade1: flagellar protein export ATPase FliI
     0.0046   14.2   0.3      0.036   11.3   0.0    2.3  2  TIGR03015 pepcterm_ATPase: putative secretion ATPase, PEP-CTERM locus subfamily
  ------ inclusion threshold ------
      0.016   12.8   0.5        0.2    9.1   0.0    2.6  2  TIGR02322 phosphon_PhnN: phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN
      0.029   10.4   4.6       0.72    5.8   0.0    3.1  3  TIGR00929 VirB4_CagE: type IV secretion/conjugal transfer ATPase, VirB4 family


Domain annotation for each model (and alignments):
>> TIGR03719  ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  220.0   0.0   1.8e-67   1.2e-65      18     542 ..     165     693 ..     153     697 .. 0.83

  Alignments for each domain:
  == domain 1    score: 220.0 bits;  conditional E-value: 1.8e-67
   TIGR03719  18 keilkdislsffpgakiGvlGlnGaGkstllkimaGvdkefeGealaaegikvGyleqePkldeektvrenveegvaeikealdrfee.isaklaeedadfdklleeqaklqekidaadawdldskleiamdalrlpeedakveklsGGekrrvalcrlllekPdlllldePtnhldaesvaWlekflkeykGtvvavthdryfldnvaeWileldrG.egipykgnysswleqkekrleqeekeeaarkkalkkeleWvrs....spkarqakskarlaryeelaseesekkeeta...eivippgerlGdkvievenlskafgdk...lliddlsfklpkggivGviGpnGaGkstlfklitgkekpdsGelkiGetvklayvdq.srdalddnktvweeisd....Gldllklgkv..evn.srayvgrfnfkGadqqkkvgelsGGernrvhlakllkeggnvllldePtndldvetlraleeallefaGcavvishdrwfldriathilafegdskveffeGnyeeyeedkkkrlGedaa 542
                 +++++d +l   +g + G++ +nG+Gkstllk +a         + + e i + +l++e +  ++ +  ++v ++v+  ke l+++ee i+ + + ed  ++++ e+  k++ +  ++ a +l   l  + + +     ++  +++sGG + rval++ l+ kP ll+ldePtnhld  +  Wle +l++++  +++  h   fl+ v++ i  l    + + y gny +++  +++   +  k++++++  +k+  +++ s    s+  +qa+sk ++   +++ ++  + k   +     + p++e++   v+ ++n+s a+  k    l+ +l+f +  ++ + ++GpnGaGkstl+kl+ ++ +p +Ge++    ++++  +q s d ld +kt  + + d    G  + + gk+  +v+  ra +g f+ +G  q + +++ls G r r+ +  +  ++  +llldePtn ld++ + +l  a+++f G +v++shd  +l+++a  i  +e ++ + +   + ++y+++ ++++ +d +
  MMETSP1137-20121227|3850_1 165 QQLFEDQTLELTYGHRYGLIAQNGSGKSTLLKCVAAR------MVPIPEFIDIWFLDREAQPSDK-SAVDVVIDTVRLEKERLEKLEEdIMCESGPEDPRLESIYEKLDKMDPSTFEKRAGELLFGLGFSQKMM-----QKATKDMSGGWRMRVALAQALFVKPMLLVLDEPTNHLDLGACVWLEDYLSKWDSILLLTSHSADFLNGVCSKIYHLTVDkRLMLYGGNYDTYVRTRTENEVNLLKRHEKEQEDIKHLKDFISScgtySNLVKQAQSKQKI--IDKMVEAGLTPKPMPDpvfRFTFPSSEKIPPPVLAFQNVSFAYSGKkedYLYTNLEFGIDCDSRIALVGPNGAGKSTLLKLMLQEIEPTEGEIRRNPHLRFGRYNQhSEDVLDLEKTPLDFLRDlfvdGVVTTE-GKKkwDVPeWRAKLGIFGVTGDKQTNLIKTLSPGFRARLVFCLMSLRNPHLLLLDEPTNPLDMDMIDSLALAIKSFNGGVVLVSHDFRLLEQVAENIWVCEHKTITPW-ASDIKAYKKHLRNQMAQDVK 693
                 68899****************************9963......345567799*******997665.55688999999999999999863666666667676766666666665555555555555555555444.....4556779****************************************************************9988876515788**********9999888888888888889999999998722224557888888776..57888877777766551126679********************7653337***************************************************9888725678999**988776552111544433.4441255425*******************************************************************************************9977666.67899999999999888765 PP

>> TIGR02857  CydD: thiol reductant ABC exporter, CydD subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.2   0.0   7.7e-17   5.1e-15     314     518 ..     145     355 ..      91     365 .. 0.67
   2 !   44.6   0.0   3.1e-14   2.1e-12     320     381 ..     459     526 ..     422     557 .. 0.83
   3 !   23.8   0.0   6.2e-08   4.1e-06     458     525 ..     595     660 ..     574     664 .. 0.90

  Alignments for each domain:
  == domain 1    score: 53.2 bits;  conditional E-value: 7.7e-17
   TIGR02857 314 ltaaassslelenvsvayegrkpalkevsltvepgelvalvGaSGaGKstllklllgfvepteGailv.....ngaelaeldadswrkqiawvpQkPllfegtvaenirlar..kdaseaevkealeragldelvkalpq......gleteiGergagLSgGqrqRlaLArallrdapllllDEPtahLDaeteaevlealrelaegrtvllvaHrla 518
                 + +++s+ +++e  s++  g++   ++  l++  g++++l+++ G+GKstllk+++  + p  + i +     +    +  d+++    i  v  +   +e  + e+i   +  +d   + + e l++ +  ++ k +++        ++++ ++ + +SgG r R+aLA+al  +  ll+lDEPt hLD  +   +++ l +     ++ll +H+  
  MMETSP1137-20121227|3850_1 145 ASRKDSRDVKIESFSISLFGQQ-LFEDQTLELTYGHRYGLIAQNGSGKSTLLKCVAARMVPIPEFIDIwfldrE---AQPSDKSAVDVVIDTVRLEKERLE-KLEEDIMCESgpEDPRLESIYEKLDKMDPSTFEKRAGEllfglgFSQKMMQKATKDMSGGWRMRVALAQALFVKPMLLVLDEPTNHLDLGACVWLEDYLSK--WDSILLLTSHSAD 355
                 22334459*************9.9*********************************999*******9885442...444444433333333333322222.2445554333102333344555555555555555444312211034678899999*********************************9998888888887..4567777777765 PP

  == domain 2    score: 44.6 bits;  conditional E-value: 3.1e-14
   TIGR02857 320 s....slelenvsvayegrk..palkevsltvepgelvalvGaSGaGKstllklllgfvepteGailv 381
                 +     l ++nvs+ay g+k     +++++ ++  +++alvG+ GaGKstllkl+l  +epteG+i+ 
  MMETSP1137-20121227|3850_1 459 KipppVLAFQNVSFAYSGKKedYLYTNLEFGIDCDSRIALVGPNGAGKSTLLKLMLQEIEPTEGEIRR 526
                 0444589*********9998755779****************************************84 PP

  == domain 3    score: 23.8 bits;  conditional E-value: 6.2e-08
   TIGR02857 458 gLSgGqrqRlaLArallrdapllllDEPtahLDaeteaevlealrelaegrtvllvaHrlalaeladk 525
                  LS G r Rl    + lr+ +llllDEPt  LD +    +  a++++  g  v+lv+H+  l+e++ +
  MMETSP1137-20121227|3850_1 595 TLSPGFRARLVFCLMSLRNPHLLLLDEPTNPLDMDMIDSLALAIKSFNGG--VVLVSHDFRLLEQVAE 660
                 79*******************************************97655..899****999887654 PP

>> TIGR03375  type_I_sec_LssB: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.4   0.0   5.8e-15   3.8e-13     480     666 ..     165     358 ..     113     377 .. 0.81
   2 !   42.3   0.0     1e-13   6.8e-12     466     525 ..     465     525 ..     456     528 .. 0.94
   3 !   22.9   0.0   7.4e-08   4.9e-06     603     677 ..     595     668 ..     590     674 .. 0.84

  Alignments for each domain:
  == domain 1    score: 46.4 bits;  conditional E-value: 5.8e-15
   TIGR03375 480 kaaLknvslkikpGekvaiiGriGsGKstllklllglyepteGsvll..dgvdirqidpadlrrnigyvpqdvtLfyGtlrdNialgap..aaedeellraaelaGvtefvkkhpk.....Gldl.qigerGesLSgGQrqavalaRallkdppillLDEPtsalDnsseekllerLkelladkTlvlvtHrtslLe 666
                 ++  ++++l++  G + ++i ++GsGKstllk ++  + p    + +   + +++  d++ +   i  v  + + +  +l + i++++     + e++ + ++++  ++f k+  +     G+ + +++   + +SgG r  vala al  +p +l+LDEPt++lD  +   l + L+++  d  l+l++H + +L+
  MMETSP1137-20121227|3850_1 165 QQLFEDQTLELTYGHRYGLIAQNGSGKSTLLKCVAARMVPIPEFIDIwfLDREAQPSDKSAVDVVIDTVRLEKERL-EKLEEDIMCESGpeDPRLESIYEKLDKMDPSTFEKRAGEllfglGFSQkMMQKATKDMSGGWRMRVALAQALFVKPMLLVLDEPTNHLDLGACVWLEDYLSKW--DSILLLTSHSADFLN 358
                 56678999**************************999998777655511566677778888888888888777765.5899***98775235666889999999999999999876555447766155667789*******************************************999..678999999998887 PP

  == domain 2    score: 42.3 bits;  conditional E-value: 1e-13
   TIGR03375 466 ielknvsfkYpeeekaaL.knvslkikpGekvaiiGriGsGKstllklllglyepteGsvl 525
                 ++++nvsf+Y+++++  L  n+++ i   +++a++G +G+GKstllkl+l+ +epteG++ 
  MMETSP1137-20121227|3850_1 465 LAFQNVSFAYSGKKEDYLyTNLEFGIDCDSRIALVGPNGAGKSTLLKLMLQEIEPTEGEIR 525
                 579********99999884699************************************995 PP

  == domain 3    score: 22.9 bits;  conditional E-value: 7.4e-08
   TIGR03375 603 sLSgGQrqavalaRallkdppillLDEPtsalDnsseekllerLkelladkTlvlvtHrtslLelv.driivldkG 677
                  LS G r  +++  + l++p++llLDEPt+ lD+   ++l  ++k++     +vlv+H   lLe v + i v ++ 
  MMETSP1137-20121227|3850_1 595 TLSPGFRARLVFCLMSLRNPHLLLLDEPTNPLDMDMIDSLALAIKSFNG--GVVLVSHDFRLLEQVaENIWVCEHK 668
                 799******************************9988888888887765..599*********8662556566555 PP

>> TIGR03873  F420-0_ABC_ATP: proposed F420-0 ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0   1.3e-05   0.00089       2      53 ..     153     204 ..     152     230 .. 0.90
   2 !   39.5   0.0   1.2e-12   7.7e-11     129     175 ..     289     335 ..     275     373 .. 0.86
   3 !   23.5   0.0   9.1e-08     6e-06      30      59 ..     496     525 ..     479     532 .. 0.90
   4 !   25.3   0.0   2.7e-08   1.8e-06     135     213 ..     593     668 ..     579     678 .. 0.84

  Alignments for each domain:
  == domain 1    score: 16.4 bits;  conditional E-value: 1.3e-05
   TIGR03873   2 lrlsrvsvraggrlivddvdvtaPaGaltgllGPnGsGkstllrllaGllap 53 
                 ++++  s+++ g+ + +d +++   G   gl+  nGsGkstll+ +a  + p
  MMETSP1137-20121227|3850_1 153 VKIESFSISLFGQQLFEDQTLELTYGHRYGLIAQNGSGKSTLLKCVAARMVP 204
                 67899999999*********************************99976655 PP

  == domain 2    score: 39.5 bits;  conditional E-value: 1.2e-12
   TIGR03873 129 sladrdlstlsGGerqrvhlaralaqePklllldePtnhldvsaqle 175
                 ++ +++++ +sGG r rv la+al  +P ll+ldePtnhld+ a + 
  MMETSP1137-20121227|3850_1 289 KMMQKATKDMSGGWRMRVALAQALFVKPMLLVLDEPTNHLDLGACVW 335
                 566788899********************************999765 PP

  == domain 3    score: 23.5 bits;  conditional E-value: 9.1e-08
   TIGR03873  30 tgllGPnGsGkstllrllaGllapdaGevd 59 
                  +l+GPnG+Gkstll+l+   ++p++Ge+ 
  MMETSP1137-20121227|3850_1 496 IALVGPNGAGKSTLLKLMLQEIEPTEGEIR 525
                 589************************985 PP

  == domain 4    score: 25.3 bits;  conditional E-value: 2.7e-08
   TIGR03873 135 lstlsGGerqrvhlaralaqePklllldePtnhldvsaqlellal.vrelaaegvtvvvalhdlnlaasvcdhvvvldgG 213
                 ++tls G r r  +     ++P+lllldePtn ld+   ++ lal +++    +  vv+  hd+ l  +v++++ v ++ 
  MMETSP1137-20121227|3850_1 593 IKTLSPGFRARLVFCLMSLRNPHLLLLDEPTNPLDMDM-IDSLALaIKSF---NGGVVLVSHDFRLLEQVAENIWVCEHK 668
                 68*********99999999****************986.55555515555...55677778************9998875 PP

>> TIGR02868  CydC: thiol reductant ABC exporter, CydC subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   1.4   5.9e-06   0.00039     293     382 ..     111     199 ..       3     211 .. 0.73
   2 !   34.8   0.0   2.4e-11   1.6e-09     464     506 ..     290     332 ..     278     346 .. 0.87
   3 !   33.6   0.0   5.3e-11   3.5e-09     321     393 ..     453     525 ..     415     531 .. 0.77
   4 !   16.6   0.0   7.7e-06   0.00051     470     529 ..     594     651 ..     588     652 .. 0.82

  Alignments for each domain:
  == domain 1    score: 17.0 bits;  conditional E-value: 5.9e-06
   TIGR02868 293 AaqqltrvraaaeRieevldakvevaeasapaaeaaasekptlelrdlsvsypgaeevlkgvsldlepGervavvGasGaGKstLlalla 382
                    + ++v++aae +++++ +++ ++ a+     a+ +++ +++++  s+s  g++  +++ +l+l+ G+r  ++++ G+GKstLl+ +a
  MMETSP1137-20121227|3850_1 111 KKGKKEEVAEAAEDLDKLTMEEGTHKLAVCTGVLASRKDSRDVKIESFSISLFGQQL-FEDQTLELTYGHRYGLIAQNGSGKSTLLKCVA 199
                 4456788999************99999999999999999*************99976.9999************************9876 PP

  == domain 2    score: 34.8 bits;  conditional E-value: 2.4e-11
   TIGR02868 464 klgeggarlSGGerqRlalARaLladapvllLDEPtehLDaet 506
                  +++  + +SGG r R+alA aL  +  +l+LDEPt hLD ++
  MMETSP1137-20121227|3850_1 290 MMQKATKDMSGGWRMRVALAQALFVKPMLLVLDEPTNHLDLGA 332
                 46677789********************************876 PP

  == domain 3    score: 33.6 bits;  conditional E-value: 5.3e-11
   TIGR02868 321 sapaaeaaasekptlelrdlsvsypgaee..vlkgvsldlepGervavvGasGaGKstLlallaglldplkGevt 393
                 + p  e+ ++  p l ++++s++y g++e    +++++ +   +r+a+vG+ GaGKstLl+l++  ++p +Ge+ 
  MMETSP1137-20121227|3850_1 453 TFPSSEKIPP--PVLAFQNVSFAYSGKKEdyLYTNLEFGIDCDSRIALVGPNGAGKSTLLKLMLQEIEPTEGEIR 525
                 3444444444..899***********99988889**************************************985 PP

  == domain 4    score: 16.6 bits;  conditional E-value: 7.7e-06
   TIGR02868 470 arlSGGerqRlalARaLladapvllLDEPtehLDaeteeelledLlaaeegrtvvlvthr 529
                 ++lS G r Rl++  + l +  +llLDEPt  LD +  ++l  ++ + +    vvlv+h+
  MMETSP1137-20121227|3850_1 594 KTLSPGFRARLVFCLMSLRNPHLLLLDEPTNPLDMDMIDSLALAIKSFN--GGVVLVSHD 651
                 689*******************************987777654444333..338888886 PP

>> TIGR03740  galliderm_ABC: lantibiotic protection ABC transporter, ATP-binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.1   0.0     1e-12   6.9e-11      10     156 ..     162     329 ..     153     352 .. 0.73
   2 ?   -1.0   0.0       3.7   2.5e+02      58      90 ..     394     426 ..     384     438 .. 0.76
   3 !   54.4   0.0   4.4e-17   2.9e-15      14     198 ..     481     666 ..     465     681 .. 0.77

  Alignments for each domain:
  == domain 1    score: 40.1 bits;  conditional E-value: 1e-12
   TIGR03740  10 fkkqavvnnvslkvkknsvygllGpnGaGkstllklltGll..rktsGeilldgrewtrkdlkkiGsliesPalyen.l..........tarenlkvrtlllglp.......esrieevlkivdlent.ekkkakqfslGmkqrlGiaiallnkPkllildePtnGld 156
                    q++ ++ +l++   + ygl+  nG+Gkstllk ++  +   ++  +i + +re + +d + + ++i++  l ++ l          +  e+ +++++ ++l+       e+r  e+l  ++++++  +k +k++s G + r+ +a al+ kP ll+ldePtn ld
  MMETSP1137-20121227|3850_1 162 LFGQQLFEDQTLELTYGHRYGLIAQNGSGKSTLLKCVAARMvpIPEFIDIWFLDREAQPSDKSAVDVVIDTVRLEKErLekleedimceSGPEDPRLESIYEKLDkmdpstfEKRAGELLFGLGFSQKmMQKATKDMSGGWRMRVALAQALFVKPMLLVLDEPTNHLD 329
                 5567788889999999********************998661246778999*******************998865413111111111122344455555554441111111235557777777765415677899*******************************9 PP

  == domain 2    score: -1.0 bits;  conditional E-value: 3.7
   TIGR03740  58 lldgrewtrkdlkkiGsliesPalyenltaren 90 
                 ll+ +e  ++d+k++  +i s  +y nl  +  
  MMETSP1137-20121227|3850_1 394 LLKRHEKEQEDIKHLKDFISSCGTYSNLVKQAQ 426
                 46778899999****************976544 PP

  == domain 3    score: 54.4 bits;  conditional E-value: 4.4e-17
   TIGR03740  14 avvnnvslkvkknsvygllGpnGaGkstllklltGllrktsGeilldgr.ewtrkdlkk..iGsliesPalyenltarenlkvrtlllglpesrieevlkivdlentek.kkakqfslGmkqrlGiaiallnkPkllildePtnGldPlGiqelreliksfpekGitvilsshilsevelladhiGiis 198
                  +  n+++ ++ +s  +l+GpnGaGkstllkl+   +++t+Gei  + + ++ r + ++  +  l ++P  + +    + +  +   ++ +  +    l i +++ +++ +  k +s G + rl   +  l++P+ll+ldePtn ld   i+ l   iksf+     v+l sh +  +e++a++i + +
  MMETSP1137-20121227|3850_1 481 YLYTNLEFGIDCDSRIALVGPNGAGKSTLLKLMLQEIEPTEGEIRRNPHlRFGRYNQHSedVLDLEKTPLDFLRDLFVDGVVTTEGKKKWDVPEWRAKLGIFGVTGDKQtNLIKTLSPGFRARLVFCLMSLRNPHLLLLDEPTNPLDMDMIDSLALAIKSFNG---GVVLVSHDFRLLEQVAENIWVCE 666
                 4567888889999999*****************************9988567887766511555555554443333344444333445555556666788888876655145799**********************************************75...47888999999999999997765 PP

>> TIGR01188  drrA: daunorubicin resistance ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   1.4       4.2   2.8e+02     210     272 ..      58     118 ..      11     159 .. 0.56
   2 ?    5.5   0.0      0.03         2      13      42 ..     172     201 ..     165     245 .. 0.90
   3 !   41.4   0.0   3.4e-13   2.3e-11      93     209 ..     265     381 ..     254     439 .. 0.72
   4 !   21.2   0.0   4.7e-07   3.1e-05      11      50 ..     485     524 ..     482     528 .. 0.90
   5 !   29.2   0.0   1.7e-09   1.1e-07     116     217 ..     587     686 ..     571     697 .. 0.80

  Alignments for each domain:
  == domain 1    score: -1.6 bits;  conditional E-value: 4.2
   TIGR01188 210 eLKervgkevveverr.dikelkkevsllaaelteslleleavevdsdkvklkveeadetvkei 272
                 e K+ ++++  e+  + ++k+++++++   a ++e+  e++a+  ++ ++kl  +e++ + +e+
  MMETSP1137-20121227|3850_1  58 EKKAALEAKKAEIAAKkAMKKVAAAAE-AGAPMDEE--EVAAMVAAEAEKKLAKKEKKGKKEEV 118
                 344444444433322202222222222.22222222..23333333333333333333333333 PP

  == domain 2    score: 5.5 bits;  conditional E-value: 0.03
   TIGR01188  13 nlkveegevfglLGPnGAGKtttikmLttl 42 
                 +l+++ g+ +gl+  nG GK+t++k +++ 
  MMETSP1137-20121227|3850_1 172 TLELTYGHRYGLIAQNGSGKSTLLKCVAAR 201
                 678889999**************9988765 PP

  == domain 3    score: 41.4 bits;  conditional E-value: 3.4e-13
   TIGR01188  93 lyglpkkeaeeraeellelvelkeaa.dkkvktysgGmrrrlelaasliaqPevlfLDEPtiGLDprtrraiwdlieelkkegvtilltthyleeadkladrva..iidkGkiiaedtpe 209
                 l  +  ++ e+ra ell  + + ++  +k  k +sgG r r+ la +l ++P +l LDEPt  LD  +   + d+++   k +  +llt+h  +  + +++++    +dk  ++  +  +
  MMETSP1137-20121227|3850_1 265 LDKMDPSTFEKRAGELLFGLGFSQKMmQKATKDMSGGWRMRVALAQALFVKPMLLVLDEPTNHLDLGACVWLEDYLS---KWDSILLLTSHSADFLNGVCSKIYhlTVDKRLMLYGGNYD 381
                 5567778899*********99987752677899********************************998777777765...557899******9999999999952234554444444444 PP

  == domain 4    score: 21.2 bits;  conditional E-value: 4.7e-07
   TIGR01188  11 gvnlkveegevfglLGPnGAGKtttikmLttllkPdsGta 50 
                 ++++ ++ ++ ++l+GPnGAGK+t++k++   ++P++G+ 
  MMETSP1137-20121227|3850_1 485 NLEFGIDCDSRIALVGPNGAGKSTLLKLMLQEIEPTEGEI 524
                 577888888999**************************86 PP

  == domain 5    score: 29.2 bits;  conditional E-value: 1.7e-09
   TIGR01188 116 eaadkkvktysgGmrrrlelaasliaqPevlfLDEPtiGLDprtrraiwdlieelkkegvtilltthyleeadkladrvaiidkGkiiaedt.peeLKervgk 217
                 +++ + +kt+s G r rl      + +P++l LDEPt  LD    +++   i++++     ++l +h++   +++a+++ + ++ +i    + ++  K+++ +
  MMETSP1137-20121227|3850_1 587 DKQTNLIKTLSPGFRARLVFCLMSLRNPHLLLLDEPTNPLDMDMIDSLALAIKSFN---GGVVLVSHDFRLLEQVAENIWVCEHKTITPWASdIKAYKKHLRN 686
                 677889***************9999****************987777766666665...6799*********************9987543314455555544 PP

>> TIGR02673  FtsE: cell division ATP-binding protein FtsE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.8   0.0    0.0039      0.26      16      54 ..     166     204 ..     154     226 .. 0.86
   2 !   35.0   0.0   3.6e-11   2.4e-09     108     202 ..     267     359 ..     261     371 .. 0.76
   3 !   30.2   0.0   1.1e-09   7.1e-08       2      61 ..     465     526 ..     464     539 .. 0.87
   4 !   22.8   0.0   1.9e-07   1.3e-05     129     209 ..     587     664 ..     563     669 .. 0.86

  Alignments for each domain:
  == domain 1    score: 8.8 bits;  conditional E-value: 0.0039
   TIGR02673  16 eaLkdvslkiekgeflfltGasGaGkttllklllgaekp 54 
                 +  +d +l+++ g+ + l+ + G+Gk+tllk + ++  p
  MMETSP1137-20121227|3850_1 166 QLFEDQTLELTYGHRYGLIAQNGSGKSTLLKCVAARMVP 204
                 567888999999*******************99987766 PP

  == domain 2    score: 35.0 bits;  conditional E-value: 3.6e-11
   TIGR02673 108 gkkeeeiqkrveevlelvgledkakalp.eelsgGeqqRvaiaRaivnkPelllaDePtGnlDdelserildllkelnkrGttvivathdeelver 202
                 +++ ++++kr  e+l  +g+++k+ +++ + +sgG + Rva+a a+  kP ll+ DePt  lD      + d l++       +++++h  ++++ 
  MMETSP1137-20121227|3850_1 267 KMDPSTFEKRAGELLFGLGFSQKMMQKAtKDMSGGWRMRVALAQALFVKPMLLVLDEPTNHLDLGACVWLEDYLSKWD---SILLLTSHSADFLNG 359
                 56678899***************87665278********************************876655544444433...345555565555555 PP

  == domain 3    score: 30.2 bits;  conditional E-value: 1.1e-09
   TIGR02673   2 ielekvskeyaagve..aLkdvslkiekgeflfltGasGaGkttllklllgaekpsrGevev 61 
                 + +++vs++y+++ e    +++++ i+  + + l+G+ GaGk+tllkl+l+  +p++Ge++ 
  MMETSP1137-20121227|3850_1 465 LAFQNVSFAYSGKKEdyLYTNLEFGIDCDSRIALVGPNGAGKSTLLKLMLQEIEPTEGEIRR 526
                 689*******96554225689**************************************985 PP

  == domain 4    score: 22.8 bits;  conditional E-value: 1.9e-07
   TIGR02673 129 dkakalpeelsgGeqqRvaiaRaivnkPelllaDePtGnlDdelserildllkelnkrGttvivathdeelvervkkrvle 209
                 dk+++l ++ls G + R       +++P+lll DePt  lD ++  ++   +k++n     v++++hd +l+e+v++++  
  MMETSP1137-20121227|3850_1 587 DKQTNLIKTLSPGFRARLVFCLMSLRNPHLLLLDEPTNPLDMDMIDSLALAIKSFNG---GVVLVSHDFRLLEQVAENIWV 664
                 8999999*************************************9998777776653...588999********9887755 PP

>> TIGR00960  3a0501s02: type II secretory pathway family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.3   0.0    0.0027      0.18      19      55 ..     168     204 ..     156     229 .. 0.81
   2 !   27.1   0.0     1e-08   6.7e-07     111     172 ..     269     331 ..     264     369 .. 0.83
   3 !   35.5   0.0   2.7e-11   1.8e-09       2      65 ..     465     529 ..     464     544 .. 0.89
   4 !   20.8   0.0   8.6e-07   5.7e-05     127     208 ..     583     662 ..     558     668 .. 0.83

  Alignments for each domain:
  == domain 1    score: 9.3 bits;  conditional E-value: 0.0027
   TIGR00960  19 ldnvtvkiekGelvflvGhsGaGkstllklilgiekp 55 
                 +++ t++++ G    l+ + G+Gkstllk + ++  p
  MMETSP1137-20121227|3850_1 168 FEDQTLELTYGHRYGLIAQNGSGKSTLLKCVAARMVP 204
                 567789999999999***************9987765 PP

  == domain 2    score: 27.1 bits;  conditional E-value: 1e-08
   TIGR00960 111 kgreieervsaalekvGlkdkaka.lPvqlsgGeqqrvaiaravvnkPallladePtgnldde 172
                  +  +e+r+ + l  +G+++k  +   +++sgG + rva+a+a+  kP ll+ dePt  ld  
  MMETSP1137-20121227|3850_1 269 DPSTFEKRAGELLFGLGFSQKMMQkATKDMSGGWRMRVALAQALFVKPMLLVLDEPTNHLDLG 331
                 5777899999999999**99976516689*******************************965 PP

  == domain 3    score: 35.5 bits;  conditional E-value: 2.7e-11
   TIGR00960   2 ikfeqvskaykgaaelal.dnvtvkiekGelvflvGhsGaGkstllklilgiekpsaGkirvsgq 65 
                 + f++vs ay g +e  l  n+++ i+  + + lvG+ GaGkstllkl+l+  +p++G+ir + +
  MMETSP1137-20121227|3850_1 465 LAFQNVSFAYSGKKEDYLyTNLEFGIDCDSRIALVGPNGAGKSTLLKLMLQEIEPTEGEIRRNPH 529
                 689*********999877479***************************************98765 PP

  == domain 4    score: 20.8 bits;  conditional E-value: 8.6e-07
   TIGR00960 127 Glk.dkakalPvqlsgGeqqrvaiaravvnkPallladePtgnlddelsrdilelleevnraGttvlvathdenlveskrkrv 208
                 G++ dk+++l ++ls G + r+      +++P+lll dePt  ld ++   +   ++++n     v++ +hd  l+e+  + +
  MMETSP1137-20121227|3850_1 583 GVTgDKQTNLIKTLSPGFRARLVFCLMSLRNPHLLLLDEPTNPLDMDMIDSLALAIKSFNG---GVVLVSHDFRLLEQVAENI 662
                 55426889999************************************98888777888873...577789******9988766 PP

>> TIGR01166  cbiO: cobalt ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.0   6.9e-05    0.0045       9      44 ..     169     204 ..     164     211 .. 0.86
   2 !   31.3   0.0   4.3e-10   2.8e-08     104     166 ..     273     336 ..     266     356 .. 0.82
   3 !   25.5   0.0   2.5e-08   1.6e-06       9      52 ..     484     527 ..     477     539 .. 0.88
   4 !   17.2   0.0   9.1e-06    0.0006     121     189 ..     589     654 ..     572     655 .. 0.85

  Alignments for each domain:
  == domain 1    score: 14.3 bits;  conditional E-value: 6.9e-05
   TIGR01166   9 kglnlavergevlallGanGaGkstlllhlnGllrP 44 
                 ++  l+++ g++ +l+ +nG+Gkstll++++  + P
  MMETSP1137-20121227|3850_1 169 EDQTLELTYGHRYGLIAQNGSGKSTLLKCVAARMVP 204
                 566788999********************9987766 PP

  == domain 2    score: 31.3 bits;  conditional E-value: 4.3e-10
   TIGR01166 104 verrvrealaavdis.gleerpthllsgGekkrvaiagavalrpdvllldePtagldpaGaeql 166
                  e+r  e l  ++ s ++ +++t+ +sgG + rva+a a+ ++p +l+ldePt  ld      l
  MMETSP1137-20121227|3850_1 273 FEKRAGELLFGLGFSqKMMQKATKDMSGGWRMRVALAQALFVKPMLLVLDEPTNHLDLGACVWL 336
                 567777778888875268899************************************8665555 PP

  == domain 3    score: 25.5 bits;  conditional E-value: 2.5e-08
   TIGR01166   9 kglnlavergevlallGanGaGkstlllhlnGllrPksGkvlld 52 
                 ++l++ ++  +++al+G+nGaGkstll+ +   + P++G++ ++
  MMETSP1137-20121227|3850_1 484 TNLEFGIDCDSRIALVGPNGAGKSTLLKLMLQEIEPTEGEIRRN 527
                 6799999999*****************************99765 PP

  == domain 4    score: 17.2 bits;  conditional E-value: 9.1e-06
   TIGR01166 121 eerpthllsgGekkrvaiagavalrpdvllldePtagldpaGaeqlleilrklreeGktvvisthdvdl 189
                 + +++++ls G + r+    +   +p++llldePt  ld +  + l+ +++ ++     vv+ +hd  l
  MMETSP1137-20121227|3850_1 589 QTNLIKTLSPGFRARLVFCLMSLRNPHLLLLDEPTNPLDMDMIDSLALAIKSFNG---GVVLVSHDFRL 654
                 456789**********999888889***************999999999888763...68889999876 PP

>> TIGR00958  3a01208: antigen peptide transporter 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.0      0.03         2     494     525 ..     165     196 ..     158     204 .. 0.91
   2 !   24.1   0.0   3.2e-08   2.1e-06     616     654 ..     296     334 ..     286     369 .. 0.82
   3 !   43.3   0.0     5e-14   3.3e-12     479     538 ..     465     524 ..     458     532 .. 0.96
   4 !   15.5   0.0   1.3e-05   0.00087     617     691 ..     595     670 ..     582     682 .. 0.87

  Alignments for each domain:
  == domain 1    score: 4.3 bits;  conditional E-value: 0.03
   TIGR00958 494 kpvlkdLtftlepGevvalVGPsGsGKStvaa 525
                 +++++d t+ l+ G+   l+  +GsGKSt   
  MMETSP1137-20121227|3850_1 165 QQLFEDQTLELTYGHRYGLIAQNGSGKSTLLK 196
                 68999************************865 PP

  == domain 2    score: 24.1 bits;  conditional E-value: 3.2e-08
   TIGR00958 616 sqlsgGqkqriAiARALvrkPrvLiLDeAtSALDaeveq 654
                 + +sgG + r+A+A AL  kP++L+LDe t  LD     
  MMETSP1137-20121227|3850_1 296 KDMSGGWRMRVALAQALFVKPMLLVLDEPTNHLDLGACV 334
                 679*******************************84333 PP

  == domain 3    score: 43.3 bits;  conditional E-value: 5e-14
   TIGR00958 479 veFqdVsFsYPsrpdkpvlkdLtftlepGevvalVGPsGsGKStvaallenlYqPtgGqv 538
                 + Fq+VsF+Y  + +  +  +L f +   + +alVGP+G GKSt   l+ +  +Pt+G++
  MMETSP1137-20121227|3850_1 465 LAFQNVSFAYSGKKEDYLYTNLEFGIDCDSRIALVGPNGAGKSTLLKLMLQEIEPTEGEI 524
                 67********************************************************98 PP

  == domain 4    score: 15.5 bits;  conditional E-value: 1.3e-05
   TIGR00958 617 qlsgGqkqriAiARALvrkPrvLiLDeAtSALDaeveqllqesksaksrtvlliahrLstvek.adkilvlkkgsv 691
                  ls G + r+      +r+P +L+LDe t  LD ++   l    ++ +  v+l+ h   + e+ a++i v ++ ++
  MMETSP1137-20121227|3850_1 595 TLSPGFRARLVFCLMSLRNPHLLLLDEPTNPLDMDMIDSLALAIKSFNGGVVLVSHDFRLLEQvAENIWVCEHKTI 670
                 57889999999999999*****************9888888888888889**********9984678888877655 PP

>> TIGR02211  LolD_lipo_ex: lipoprotein releasing system, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.0   0.0    0.0015       0.1      19      53 ..     166     200 ..     155     213 .. 0.87
   2 !   37.3   0.0   6.5e-12   4.3e-10     112     176 ..     267     332 ..     260     362 .. 0.85
   3 !   21.0   0.0   6.1e-07     4e-05       4      63 ..     467     525 ..     464     537 .. 0.85
   4 !   16.8   0.0   1.2e-05   0.00081     139     212 ..     593     662 ..     580     670 .. 0.82

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 0.0015
   TIGR02211  19 evlkgvsleiekgelvaivGssGsGkstllhllgg 53 
                 +++++  le++ g   +++ + GsGkstll  +++
  MMETSP1137-20121227|3850_1 166 QLFEDQTLELTYGHRYGLIAQNGSGKSTLLKCVAA 200
                 677888999*********************98876 PP

  == domain 2    score: 37.3 bits;  conditional E-value: 6.5e-12
   TIGR02211 112 kkskkeakerakellekvglekrinkkp.selsGGerqrvaiaralvnkPklvladePtgnldkkt 176
                 k++ +  ++ra ell  +g+++++ +k+  ++sGG r rva+a+al  kP l++ dePt +ld  +
  MMETSP1137-20121227|3850_1 267 KMDPSTFEKRAGELLFGLGFSQKMMQKAtKDMSGGWRMRVALAQALFVKPMLLVLDEPTNHLDLGA 332
                 667778899************9987776168********************************755 PP

  == domain 3    score: 21.0 bits;  conditional E-value: 6.1e-07
   TIGR02211   4 cenltksykegkleievlkgvsleiekgelvaivGssGsGkstllhllggldkptsGevl 63 
                  +n++  y+ + +e  +++++++ i+    +a+vG  G+Gkstll l+    +pt+Ge+ 
  MMETSP1137-20121227|3850_1 467 FQNVSFAYSGK-KEDYLYTNLEFGIDCDSRIALVGPNGAGKSTLLKLMLQEIEPTEGEIR 525
                 56677777655.5556899****************************999999****996 PP

  == domain 4    score: 16.8 bits;  conditional E-value: 1.2e-05
   TIGR02211 139 pselsGGerqrvaiaralvnkPklvladePtgnldkktakkifelllelnkekntallvvthdlelakkldrvl 212
                    ls G r r       + +P+l+l dePt  ld +  +++   ++      n ++++v+hd +l +++ + +
  MMETSP1137-20121227|3850_1 593 IKTLSPGFRARLVFCLMSLRNPHLLLLDEPTNPLDMDMIDSLALAIKS----FNGGVVLVSHDFRLLEQVAENI 662
                 56799999***99999999****************9887776555554....56789*********99987765 PP

>> TIGR03608  L_ocin_972_ABC: putative bacteriocin export ABC transporter, lactococcin 972 group
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0   1.8e-05    0.0012       6      45 ..     160     199 ..     155     205 .. 0.88
   2 !   25.9   0.0   1.9e-08   1.3e-06     111     167 ..     273     330 ..     258     360 .. 0.81
   3 !   17.6   0.0   6.9e-06   0.00045      10      56 ..     479     525 ..     467     553 .. 0.80
   4 !   24.2   0.0   6.2e-08   4.1e-06     123     204 ..     583     662 ..     560     664 .. 0.82

  Alignments for each domain:
  == domain 1    score: 16.2 bits;  conditional E-value: 1.8e-05
   TIGR03608   6 kkfkdkeilkklslkiekGelvaivGesGsGKstlLnilg 45 
                  ++  ++++++  l++  G+ + ++ + GsGKstlL  ++
  MMETSP1137-20121227|3850_1 160 ISLFGQQLFEDQTLELTYGHRYGLIAQNGSGKSTLLKCVA 199
                 56677899****************************9887 PP

  == domain 2    score: 25.9 bits;  conditional E-value: 1.9e-08
   TIGR03608 111 kekkkkevlekvgl.ekklkkkiyelsgGekqRvalarillkeselilADEPtgsLDk 167
                  ek+  e+l  +g+ +k ++k   ++sgG + Rvala++l+ ++ l++ DEPt  LD 
  MMETSP1137-20121227|3850_1 273 FEKRAGELLFGLGFsQKMMQKATKDMSGGWRMRVALAQALFVKPMLLVLDEPTNHLDL 330
                 5666777888889945556677889*******************************96 PP

  == domain 3    score: 17.6 bits;  conditional E-value: 6.9e-06
   TIGR03608  10 dkeilkklslkiekGelvaivGesGsGKstlLnilgllekkdsgkvi 56 
                 +  + ++l++ i++ + +a+vG  G+GKstlL ++ +  ++ +g++ 
  MMETSP1137-20121227|3850_1 479 EDYLYTNLEFGIDCDSRIALVGPNGAGKSTLLKLMLQEIEPTEGEIR 525
                 44678899************************987665556667765 PP

  == domain 4    score: 24.2 bits;  conditional E-value: 6.2e-08
   TIGR03608 123 gl.ekklkkkiyelsgGekqRvalarillkeselilADEPtgsLDkknreevlellkelkeegktiiivtHdpevaekadrvi 204
                 g+   k+ + i +ls G + R+    + l++++l+l DEPt  LD++  +   +l   +k+ +  +++v Hd  + e++ + i
  MMETSP1137-20121227|3850_1 583 GVtGDKQTNLIKTLSPGFRARLVFCLMSLRNPHLLLLDEPTNPLDMDMID---SLALAIKSFNGGVVLVSHDFRLLEQVAENI 662
                 553456778899*********************************97555...555677888889********9999987765 PP

>> TIGR03864  PQQ_ABC_ATP: ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.0   0.0    0.0014     0.095      13      51 ..     164     202 ..     152     238 .. 0.77
   2 !   31.5   0.0   3.7e-10   2.5e-08     101     171 ..     265     336 ..     259     350 .. 0.86
   3 !   24.0   0.0   7.4e-08   4.9e-06       2      59 ..     465     525 ..     464     531 .. 0.85
   4 !   17.4   0.0   7.6e-06    0.0005     124     176 ..     587     639 ..     565     661 .. 0.86

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 0.0014
   TIGR03864  13 krralddvsltvakgefvaLLGpnGaGkstLfslltrLy 51 
                  ++ ++d +l+++ g+   L+  nG+GkstL++ ++  +
  MMETSP1137-20121227|3850_1 164 GQQLFEDQTLELTYGHRYGLIAQNGSGKSTLLKCVAARM 202
                 4567788899**********************9887554 PP

  == domain 2    score: 31.5 bits;  conditional E-value: 3.7e-10
   TIGR03864 101 LhGlsraeaeerieealarlglaeraeek.vreLnGGhrrrveiarallhePklLLlDeatvGLDiesraal 171
                 L  +  ++ e+r  e+l  lg++++  +k  ++++GG r rv +a+al  +P lL+lDe+t  LD+ +   l
  MMETSP1137-20121227|3850_1 265 LDKMDPSTFEKRAGELLFGLGFSQKMMQKaTKDMSGGWRMRVALAQALFVKPMLLVLDEPTNHLDLGACVWL 336
                 555666677899999**********99885689********************************9876655 PP

  == domain 3    score: 24.0 bits;  conditional E-value: 7.4e-08
   TIGR03864   2 leveglsfaygkrr...alddvsltvakgefvaLLGpnGaGkstLfslltrLyeakegeik 59 
                 l+ +++sfay+ ++      ++++ +   + +aL+GpnGaGkstL++l+ + +e +egei+
  MMETSP1137-20121227|3850_1 465 LAFQNVSFAYSGKKedyLYTNLEFGIDCDSRIALVGPNGAGKSTLLKLMLQEIEPTEGEIR 525
                 677899999965542324678999*************************999999999986 PP

  == domain 4    score: 17.4 bits;  conditional E-value: 7.6e-06
   TIGR03864 124 eraeekvreLnGGhrrrveiarallhePklLLlDeatvGLDiesraalveevr 176
                 +++++ +++L+ G r r+      l +P+lLLlDe+t  LD++  ++l  +++
  MMETSP1137-20121227|3850_1 587 DKQTNLIKTLSPGFRARLVFCLMSLRNPHLLLLDEPTNPLDMDMIDSLALAIK 639
                 6778889**********************************998777766665 PP

>> TIGR01842  type_I_sec_PrtD: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.1   0.0    0.0053      0.35     332     365 ..     166     199 ..     143     208 .. 0.83
   2 !   30.9   0.0   3.5e-10   2.3e-08     449     487 ..     292     330 ..     280     377 .. 0.86
   3 !   25.6   0.0   1.3e-08   8.6e-07     316     376 ..     464     525 ..     447     539 .. 0.87
   4 !   18.3   0.0   2.2e-06   0.00015     453     527 ..     594     666 ..     589     678 .. 0.86

  Alignments for each domain:
  == domain 1    score: 7.1 bits;  conditional E-value: 0.0053
   TIGR01842 332 ktlkgisfalkaGealaiiGpsgsGkssLarllv 365
                 + +++ +++l+ G+  ++i + gsGks+L +++ 
  MMETSP1137-20121227|3850_1 166 QLFEDQTLELTYGHRYGLIAQNGSGKSTLLKCVA 199
                 47788999**********************9986 PP

  == domain 2    score: 30.9 bits;  conditional E-value: 3.5e-10
   TIGR01842 449 gegGaaLsgGqrqRiaLaRalygdPklvvLDePnanLDe 487
                  ++ + +sgG r R+aLa al+ +P+l+vLDeP   LD 
  MMETSP1137-20121227|3850_1 292 QKATKDMSGGWRMRVALAQALFVKPMLLVLDEPTNHLDL 330
                 4567889******************************95 PP

  == domain 3    score: 25.6 bits;  conditional E-value: 1.3e-08
   TIGR01842 316 elevenvslvppeekkktl.kgisfalkaGealaiiGpsgsGkssLarllvGvwlpasGsvr 376
                  l+ +nvs++ +++k++ l ++++f ++  + +a++Gp g+Gks+L +l++  ++p++G++r
  MMETSP1137-20121227|3850_1 464 VLAFQNVSFAYSGKKEDYLyTNLEFGIDCDSRIALVGPNGAGKSTLLKLMLQEIEPTEGEIR 525
                 5788999999998887665389**************************************99 PP

  == domain 4    score: 18.3 bits;  conditional E-value: 2.2e-06
   TIGR01842 453 aaLsgGqrqRiaLaRalygdPklvvLDePnanLDeeGeqalakalkelkarkitvvvithrpsllelv.dkilvlk 527
                 ++Ls G r R+       ++P+l++LDeP   LD +    la a+k+    +  vv+++h  +lle+v ++i v +
  MMETSP1137-20121227|3850_1 594 KTLSPGFRARLVFCLMSLRNPHLLLLDEPTNPLDMDMIDSLALAIKSF---NGGVVLVSHDFRLLEQVaENIWVCE 666
                 589********************************9999999888765...6789**********87625566655 PP

>> TIGR02769  nickel_nikE: nickel import ATP-binding protein NikE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.1   0.0    0.0054      0.36      24      57 ..     165     198 ..     150     209 .. 0.87
   2 !   38.9   0.0   2.2e-12   1.5e-10     116     184 ..     263     331 ..     255     367 .. 0.90
   3 !   18.7   0.0     3e-06    0.0002      21      69 ..     477     525 ..     465     530 .. 0.85
   4 !   14.6   0.0   5.5e-05    0.0036     142     229 ..     587     670 ..     575     692 .. 0.77

  Alignments for each domain:
  == domain 1    score: 8.1 bits;  conditional E-value: 0.0054
   TIGR02769  24 kavldnvslsleeGetvallGrsGaGkstlarll 57 
                 ++++++  l+l  G+  +l+ + G+Gkstl + +
  MMETSP1137-20121227|3850_1 165 QQLFEDQTLELTYGHRYGLIAQNGSGKSTLLKCV 198
                 67788999**********************8865 PP

  == domain 2    score: 38.9 bits;  conditional E-value: 2.2e-12
   TIGR02769 116 rhltsldeserkariaellelvelrsevldklPrqlsGGqlqriniaralavePklivldeavsnldlv 184
                 ++l ++d s  ++r+ ell  +++++++++k  +++sGG   r+++a+al v+P l+vlde    ldl 
  MMETSP1137-20121227|3850_1 263 EKLDKMDPSTFEKRAGELLFGLGFSQKMMQKATKDMSGGWRMRVALAQALFVKPMLLVLDEPTNHLDLG 331
                 67899*************************************************************985 PP

  == domain 3    score: 18.7 bits;  conditional E-value: 3e-06
   TIGR02769  21 kqrkavldnvslsleeGetvallGrsGaGkstlarlllGlekPakGevs 69 
                 k+   + +n+++ ++    +al+G  GaGkstl +l+l   +P++Ge++
  MMETSP1137-20121227|3850_1 477 KKEDYLYTNLEFGIDCDSRIALVGPNGAGKSTLLKLMLQEIEPTEGEIR 525
                 44555678999999999******************************97 PP

  == domain 4    score: 14.6 bits;  conditional E-value: 5.5e-05
   TIGR02769 142 evldklPrqlsGGqlqriniaralavePklivldeavsnldlvlqasilellkklkqefGlaylfithdlrlvqkfaqrvlvldeGqi 229
                 ++   l + ls G   r+        +P+l++lde    ld+ +    ++ l    + f   +++++hd+rl +++a+++ v ++  i
  MMETSP1137-20121227|3850_1 587 DKQTNLIKTLSPGFRARLVFCLMSLRNPHLLLLDEPTNPLDMDM----IDSLALAIKSFNGGVVLVSHDFRLLEQVAENIWVCEHKTI 670
                 555566667777777777776666779**************965....4444444445666789****************99987655 PP

>> TIGR03796  NHLM_micro_ABC1: NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   1.8e-05    0.0012     484     527 ..     157     200 ..     106     226 .. 0.86
   2 !   24.0   0.0   3.2e-08   2.1e-06     607     670 ..     289     352 ..     282     357 .. 0.83
   3 !   30.2   0.0   4.2e-10   2.8e-08     479     537 ..     466     525 ..     456     534 .. 0.90
   4 !   10.5   0.0    0.0004     0.026     615     677 ..     595     657 ..     584     672 .. 0.85

  Alignments for each domain:
  == domain 1    score: 15.0 bits;  conditional E-value: 1.8e-05
   TIGR03796 484 tfgysaleapliedfslslkpGqrvAlvGgsGsGkstiaklvaG 527
                 +f+ s   ++l ed +l+l+ G+r  l+ + GsGkst+ k va 
  MMETSP1137-20121227|3850_1 157 SFSISLFGQQLFEDQTLELTYGHRYGLIAQNGSGKSTLLKCVAA 200
                 68999999********************************9985 PP

  == domain 2    score: 24.0 bits;  conditional E-value: 3.2e-08
   TIGR03796 607 aelaegganlsGGqrqRleiARaLvknPsiLilDEatsaLDaetEkaidenlrrRgctciivaH 670
                 + +++  +++sGG r R+ +A aL  +P +L+lDE t  LD  +   +++ l +     ++ +H
  MMETSP1137-20121227|3850_1 289 KMMQKATKDMSGGWRMRVALAQALFVKPMLLVLDEPTNHLDLGACVWLEDYLSKWDSILLLTSH 352
                 456677899********************************98888887777776666666655 PP

  == domain 3    score: 30.2 bits;  conditional E-value: 4.2e-10
   TIGR03796 479 elrnvtfgys.aleapliedfslslkpGqrvAlvGgsGsGkstiaklvaGlyepwsGeil 537
                  ++nv+f+ys + e  l  ++++ ++  +r+AlvG+ G+Gkst+ kl+    ep++Gei+
  MMETSP1137-20121227|3850_1 466 AFQNVSFAYSgKKEDYLYTNLEFGIDCDSRIALVGPNGAGKSTLLKLMLQEIEPTEGEIR 525
                 579******934567899****************************************97 PP

  == domain 4    score: 10.5 bits;  conditional E-value: 0.0004
   TIGR03796 615 nlsGGqrqRleiARaLvknPsiLilDEatsaLDaetEkaidenlrrRgctciivaHRLstiRd 677
                  ls G r Rl       +nP +L+lDE t  LD     ++  +++  +  +++v+H    + +
  MMETSP1137-20121227|3850_1 595 TLSPGFRARLVFCLMSLRNPHLLLLDEPTNPLDMDMIDSLALAIKSFNGGVVLVSHDFRLLEQ 657
                 58999999999999999***************************************7665554 PP

>> TIGR03522  GldA_ABC_ATP: gliding motility-associated ABC transporter ATP-binding subunit GldA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.6   0.0    0.0018      0.12       7      53 ..     157     203 ..     152     227 .. 0.82
   2 !   34.2   0.0   6.1e-11     4e-09     103     255 ..     266     419 ..     259     441 .. 0.78
   3 !   36.0   0.0   1.7e-11   1.1e-09      19     180 ..     484     642 ..     466     671 .. 0.72

  Alignments for each domain:
  == domain 1    score: 9.6 bits;  conditional E-value: 0.0018
   TIGR03522   7 dlsklygkqkaldevsfeaekGeivGflGPnGaGkstlmkiltgylk 53 
                 + s +   q+  ++ ++e   G+  G++  nG+Gkstl+k +++ + 
  MMETSP1137-20121227|3850_1 157 SFSISLFGQQLFEDQTLELTYGHRYGLIAQNGSGKSTLLKCVAARMV 203
                 555554556677888999**********************9987665 PP

  == domain 2    score: 34.2 bits;  conditional E-value: 6.1e-11
   TIGR03522 103 yklkgrklkkrveelielvGlkaeqhkk.igalskGyrqrvGlakallhdPkvlildePttGldPnqlveirevikeiakdktvilsthimqevealcdrv..iiinkGkivadkkleelkaaekkkvievefeeeidlqllekleevsevkklkg 255
                  k++  + +kr  el+   G++++  +k   ++s G+r rv la+al  +P +l+ldePt  ld    v + + + +   d  ++l++h    ++ +c ++  + ++k  ++   + +  + + +++ +++   +e +++ +++l++ ++   + +
  MMETSP1137-20121227|3850_1 266 DKMDPSTFEKRAGELLFGLGFSQKMMQKaTKDMSGGWRMRVALAQALFVKPMLLVLDEPTNHLDLGACVWLEDYLSK--WDSILLLTSHSADFLNGVCSKIyhLTVDKRLMLYGGNYDTYVRTRTENEVNLLKRHEKEQEDIKHLKDFISSCGTYS 419
                 56777778888889998899888776551678*************************************99998876..478899999***********984456778888888898888888887777777777777777777776665555444 PP

  == domain 3    score: 36.0 bits;  conditional E-value: 1.7e-11
   TIGR03522  19 devsfeaekGeivGflGPnGaGkstlmkiltgylkadsGsvavagedvlknslevrkniGylPehnPl..yldlyvreylefsaalyklkgrklkkrveel...ielvGlka.eqhkkigalskGyrqrvGlakallhdPkvlildePttGldPnqlveirevikeia 180
                  ++ f ++  + + ++GPnGaGkstl+k++   ++++ G +  + +       + ++ +  l e  Pl    dl+v             +g k+k  v e    +   G++  +q   i  ls G+r r  +    l +P++l+ldePt  ld + +  +   ik+  
  MMETSP1137-20121227|3850_1 484 TNLEFGIDCDSRIALVGPNGAGKSTLLKLMLQEIEPTEGEIRRNPHLRFGRYNQHSEDVLDL-EKTPLdfLRDLFVDGV-------VTTEG-KKKWDVPEWrakLGIFGVTGdKQTNLIKTLSPGFRARLVFCLMSLRNPHLLLLDEPTNPLDMDMIDSLALAIKSFN 642
                 56778888888999**************************9998887777666666666555.7788722245555544.......44443.33444444400044455555146677999********************************999888877777654 PP

>> TIGR01189  ccmA: heme ABC exporter, ATP-binding protein CcmA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.9   0.0   0.00021     0.014      12      51 ..     164     203 ..     154     231 .. 0.88
   2 !   21.0   0.0   7.1e-07   4.7e-05     120     172 ..     290     342 ..     269     358 .. 0.83
   3 !   44.8   0.0   3.7e-14   2.4e-12      11     184 ..     478     650 ..     467     662 .. 0.72

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 0.00021
   TIGR01189  12 ervlleglsfelaaGealvveGpnGiGKttLLRilaGLlk 51 
                 +++l+e+ ++el+ G+   +  +nG+GK+tLL+ +a  + 
  MMETSP1137-20121227|3850_1 164 GQQLFEDQTLELTYGHRYGLIAQNGSGKSTLLKCVAARMV 203
                 57899999**************************997665 PP

  == domain 2    score: 21.0 bits;  conditional E-value: 7.1e-07
   TIGR01189 120 ledlpvaqLsAGqkrRlalarLllskaplWiLDEPttalDkegvellaellaa 172
                 + + +++ +s G + R+ala+ l  k  l +LDEPt  lD  +   l++ l++
  MMETSP1137-20121227|3850_1 290 MMQKATKDMSGGWRMRVALAQALFVKPMLLVLDEPTNHLDLGACVWLEDYLSK 342
                 56778899********************************9998888877764 PP

  == domain 3    score: 44.8 bits;  conditional E-value: 3.7e-14
   TIGR01189  11 gervlleglsfelaaGealvveGpnGiGKttLLRilaGLlkpesGevelndkelaeqrdelaeellylgHldgl....KaeLsalEnLkfyaallqseqk...tveealekvgL...sgle.dlpvaqLsAGqkrRlalarLllskaplWiLDEPttalDkegvellaellaaHlargGivllat 184
                  e+ l+++l+f +     ++++GpnG+GK+tLL+++   ++p++Ge++ n  +l        +   y  H++ +    K+ L  l +L f   ++++e k   +v e  +k+g+   +g +   ++++Ls G + Rl +  + l +  l +LDEPt  lD + ++ la ++++   +gG+vl++ 
  MMETSP1137-20121227|3850_1 478 KEDYLYTNLEFGIDCDSRIALVGPNGAGKSTLLKLMLQEIEPTEGEIRRN-PHL--------RFGRYNQHSEDVldleKTPLDFLRDL-FVDGVVTTEGKkkwDVPEWRAKLGIfgvTGDKqTNLIKTLSPGFRARLVFCLMSLRNPHLLLLDEPTNPLDMDMIDSLALAIKSF--NGGVVLVSH 650
                 6788999*****************************************99.232........23345555544311114444444444.55555544433124555555566551115444146799****************************************9999875..566666554 PP

>> TIGR03410  urea_trans_UrtE: urea ABC transporter, ATP-binding protein UrtE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.5   0.0   0.00047     0.031      13      49 ..     165     201 ..     153     210 .. 0.84
   2 !   26.9   0.0   9.4e-09   6.2e-07     122     160 ..     288     326 ..     266     342 .. 0.92
   3 !   18.1   0.0   4.6e-06   0.00031      15      58 ..     482     525 ..     465     532 .. 0.81
   4 !   21.1   0.0   5.5e-07   3.6e-05     118     228 ..     582     688 ..     560     690 .. 0.83

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 0.00047
   TIGR03410  13 sevlrdvslevekgevvavlGrngvGkttllkalvgl 49 
                  ++++d +le++ g+   ++ +ng Gk+tllk++ + 
  MMETSP1137-20121227|3850_1 165 QQLFEDQTLELTYGHRYGLIAQNGSGKSTLLKCVAAR 201
                 57788999999**********************9875 PP

  == domain 2    score: 26.9 bits;  conditional E-value: 9.4e-09
   TIGR03410 122 kemlkRrgGdLsGGqqqqlaiaRaLvtePklllLDePte 160
                 ++m+++ + d+sGG +  +a+a aL  +P ll+LDePt+
  MMETSP1137-20121227|3850_1 288 QKMMQKATKDMSGGWRMRVALAQALFVKPMLLVLDEPTN 326
                 78999********************************97 PP

  == domain 3    score: 18.1 bits;  conditional E-value: 4.6e-06
   TIGR03410  15 vlrdvslevekgevvavlGrngvGkttllkalvgllkvksGeie 58 
                 + +++++ ++ ++ +a++G ng+Gk+tllk ++  ++ ++Gei+
  MMETSP1137-20121227|3850_1 482 LYTNLEFGIDCDSRIALVGPNGAGKSTLLKLMLQEIEPTEGEIR 525
                 5678999999999*****************************97 PP

  == domain 4    score: 21.1 bits;  conditional E-value: 5.5e-07
   TIGR03410 118 FPvlkemlkRrgGdLsGGqqqqlaiaRaLvtePklllLDePteGiqPsiikeiekvikelakekdlaillveqvldfaleladrylvlerGevvaegekeeldeekvkkll 228
                 F v  + ++     Ls G +  l      + +P+lllLDePt+ +   +i+ ++ +ik+ +     +++lv + + +  ++a++++v e+ +++   +  ++ ++++++++
  MMETSP1137-20121227|3850_1 582 FGVTGDKQTNLIKTLSPGFRARLVFCLMSLRNPHLLLLDEPTNPLDMDMIDSLALAIKSFNG----GVVLVSHDFRLLEQVAENIWVCEHKTITPWASDIKAYKKHLRNQM 688
                 5555555555666799999999999999999*************************999876....8*********************99998877776666666666655 PP

>> TIGR02315  ABC_phnC: phosphonate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.2   0.0   5.1e-14   3.3e-12      14     189 ..     164     341 ..     153     373 .. 0.75
   2 !   22.2   0.0   2.6e-07   1.7e-05       2      60 ..     465     525 ..     464     537 .. 0.86
   3 !    9.2   0.0    0.0024      0.16     138     185 ..     588     635 ..     576     670 .. 0.80

  Alignments for each domain:
  == domain 1    score: 44.2 bits;  conditional E-value: 5.1e-14
   TIGR02315  14 gkqalknvnleikkGelvaviGlsGaGkstllrsin.rlveiss.gsillegkevtklkkkelrklrkkigmifqeynlierltvle.nvLsgrlgakstlksllglfseed....kekAlelLervglaelaakra.dqLsGGqqqRvaiaRalaqqpklilaDEPiasLDpksskqvmdllk 189
                 g+q +++  le++ G   ++i + G+Gkstll+++  r+v i +  +i + ++e +   k+++  +   + +         rl+ le +++       + l+s+++ + + d    +++A elL  +g++++ +++a +++sGG + Rva+a al  +p l++ DEP+  LD  ++  + d+l 
  MMETSP1137-20121227|3850_1 164 GQQLFEDQTLELTYGHRYGLIAQNGSGKSTLLKCVAaRMVPIPEfIDIWFLDREAQPSDKSAVDVVIDTVRLEKE------RLEKLEeDIMCESGPEDPRLESIYEKLDKMDpstfEKRAGELLFGLGFSQKMMQKAtKDMSGGWRMRVALAQALFVKPMLLVLDEPTNHLDLGACVWLEDYLS 341
                 5788899999************************96377775441588888888876666665555444444333......44444404444455566778888888877774444689***********9999987367********************************988877766664 PP

  == domain 2    score: 22.2 bits;  conditional E-value: 2.6e-07
   TIGR02315   2 levenlskvypngkq..alknvnleikkGelvaviGlsGaGkstllrsinrlveissgsil 60 
                 l ++n+s  y+++k+     n+++ i+    +a++G+ GaGkstll+ + + +e+++g+i 
  MMETSP1137-20121227|3850_1 465 LAFQNVSFAYSGKKEdyLYTNLEFGIDCDSRIALVGPNGAGKSTLLKLMLQEIEPTEGEIR 525
                 7789999999977652145788889999******************************996 PP

  == domain 3    score: 9.2 bits;  conditional E-value: 0.0024
   TIGR02315 138 laakradqLsGGqqqRvaiaRalaqqpklilaDEPiasLDpksskqvm 185
                 ++++  ++Ls G + R+  +   +++p+l+l DEP+  LD      + 
  MMETSP1137-20121227|3850_1 588 KQTNLIKTLSPGFRARLVFCLMSLRNPHLLLLDEPTNPLDMDMIDSLA 635
                 45566789********************************87665554 PP

>> TIGR01288  nodI: nodulation ABC transporter NodI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.1   0.0   6.9e-13   4.6e-11      13     207 ..     161     366 ..     151     381 .. 0.75
   2 !   21.1   0.0   4.1e-07   2.7e-05       9      61 ..     469     524 ..     464     540 .. 0.85
   3 !   14.0   0.0   6.3e-05    0.0042     130     169 ..     590     629 ..     572     669 .. 0.83

  Alignments for each domain:
  == domain 1    score: 40.1 bits;  conditional E-value: 6.9e-13
   TIGR01288  13 sygdkvvvndlsftiaagecfgllgpngagkstiarlvlg.lis.pdegkitvlg.epvpararlarakigvv....pqfdnldreftvr...en..l.lvfgryfglstreieevipsllefarleska.dvrvadlsggmkrrltlaralindpqllildepttgldpharhliwerlrsllargkti.lltthlmeeaerlcdrlcv 207
                 s  ++ + +d ++ ++ g  +gl+  ng+gkst+ + v   +++ p+   i  l+ e +p+   +  + i  v     ++++l++++      e+  l  ++ +  +++  ++e+    ll    +  k  +    d+sgg + r++la+al   p ll+ldept  ld  a   +w  l   l++  +i llt+h  +  + +c ++  
  MMETSP1137-20121227|3850_1 161 SLFGQQLFEDQTLELTYGHRYGLIAQNGSGKSTLLKCVAArMVPiPEFIDIWFLDrEAQPSDKSAVDVVIDTVrlekERLEKLEEDIMCEsgpEDprLeSIYEKLDKMDPSTFEKRAGELLFGLGFSQKMmQKATKDMSGGWRMRVALAQALFVKPMLLVLDEPTNHLDLGAC--VW--LEDYLSKWDSIlLLTSHSADFLNGVCSKIYH 366
                 44445567888999********************999987244336777888898356799988888988888333346788888876642222222225899999**********999986666666651455679********************************9985..66..5667777666615688888888888887765 PP

  == domain 2    score: 21.1 bits;  conditional E-value: 4.1e-07
   TIGR01288   9 gvsksygdk...vvvndlsftiaagecfgllgpngagkstiarlvlglispdegki 61 
                 +vs +y +k    +  +l f i     + l+gpngagkst+ +l+l  i p eg+i
  MMETSP1137-20121227|3850_1 469 NVSFAYSGKkedYLYTNLEFGIDCDSRIALVGPNGAGKSTLLKLMLQEIEPTEGEI 524
                 666666554233577899************************************98 PP

  == domain 3    score: 14.0 bits;  conditional E-value: 6.3e-05
   TIGR01288 130 dvrvadlsggmkrrltlaralindpqllildepttgldph 169
                    + +ls g++ rl ++   + +p+ll+ldept  ld  
  MMETSP1137-20121227|3850_1 590 TNLIKTLSPGFRARLVFCLMSLRNPHLLLLDEPTNPLDMD 629
                 556789*****************************99965 PP

>> TIGR00968  3a0106s01: sulfate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.1   0.0   0.00069     0.046      13      48 ..     165     200 ..     153     230 .. 0.83
   2 !   30.6   0.0   7.3e-10   4.8e-08      99     174 ..     265     341 ..     261     354 .. 0.80
   3 !   16.4   0.0   1.6e-05     0.001      18      58 ..     485     525 ..     469     530 .. 0.89
   4 !   15.6   0.0   2.9e-05    0.0019     129     215 ..     594     676 ..     579     690 .. 0.87

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 0.00069
   TIGR00968  13 fqalddvdlevktGslvallGpsGsGkstllrviaG 48 
                  q ++d  le+  G+  +l+   GsGkstll+ +a 
  MMETSP1137-20121227|3850_1 165 QQLFEDQTLELTYGHRYGLIAQNGSGKSTLLKCVAA 200
                 47788999************************9996 PP

  == domain 2    score: 30.6 bits;  conditional E-value: 7.3e-10
   TIGR00968  99 irkkdkakikakveellelvql.eklgdrypsqlsGGqrqrvalaralavepqvllldepfgaldakvrkelrawlr 174
                 + k+d  +  ++  ell  +++ +k+ ++  +++sGG r rvala+al v+p +l+ldep   ld      l  +l 
  MMETSP1137-20121227|3850_1 265 LDKMDPSTFEKRAGELLFGLGFsQKMMQKATKDMSGGWRMRVALAQALFVKPMLLVLDEPTNHLDLGACVWLEDYLS 341
                 5577777888888888877766257899999********************************99766555555555 PP

  == domain 3    score: 16.4 bits;  conditional E-value: 1.6e-05
   TIGR00968  18 dvdlevktGslvallGpsGsGkstllrviaGlekpdsGril 58 
                 ++++ ++  s +al+Gp G+Gkstll+++    +p++G+i+
  MMETSP1137-20121227|3850_1 485 NLEFGIDCDSRIALVGPNGAGKSTLLKLMLQEIEPTEGEIR 525
                 67888999999*****************9999999999986 PP

  == domain 4    score: 15.6 bits;  conditional E-value: 2.9e-05
   TIGR00968 129 sqlsGGqrqrvalaralavepqvllldepfgaldakvrkelrawlrklhdevkvttvfvthdqeealevadrivvlekGkieqvgsa 215
                 + ls G r r+ +      +p++llldep   ld  + + l   ++ +        v+v+hd     +va++i v e+  i    s 
  MMETSP1137-20121227|3850_1 594 KTLSPGFRARLVFCLMSLRNPHLLLLDEPTNPLDMDMIDSLALAIKSFNGG----VVLVSHDFRLLEQVAENIWVCEHKTITPWASD 676
                 569999999*999999999**********************9999887765....599******************99988766555 PP

>> TIGR02204  MsbA_rel: ABC transporter, permease/ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.0      0.37        25     356     387 ..     168     199 ..      96     222 .. 0.88
   2 !   18.4   0.0   2.2e-06   0.00015     465     508 ..     285     329 ..     260     338 .. 0.86
   3 !   44.3   0.0   3.2e-14   2.1e-12     337     398 ..     464     525 ..     412     528 .. 0.79
   4 !    9.5   0.0    0.0011     0.075     475     522 ..     594     641 ..     587     672 .. 0.80

  Alignments for each domain:
  == domain 1    score: 1.2 bits;  conditional E-value: 0.37
   TIGR02204 356 ldgldltvrpGetvalvGPsGaGkstllelll 387
                 +++  l++  G++  l+   G+Gkstll+ + 
  MMETSP1137-20121227|3850_1 168 FEDQTLELTYGHRYGLIAQNGSGKSTLLKCVA 199
                 5677889999*****************99765 PP

  == domain 2    score: 18.4 bits;  conditional E-value: 2.2e-06
   TIGR02204 465 GydtllGer.gvtLsGGqkqriaiarailkdapiLLLdeatsaLd 508
                 G++ ++ ++ +  +sGG + r+a+a+a++ +  +L+Lde t+ Ld
  MMETSP1137-20121227|3850_1 285 GFSQKMMQKaTKDMSGGWRMRVALAQALFVKPMLLVLDEPTNHLD 329
                 56555444415689******************************9 PP

  == domain 3    score: 44.3 bits;  conditional E-value: 3.2e-14
   TIGR02204 337 eiefeevkfayParpdqkaldgldltvrpGetvalvGPsGaGkstllelllrfydPqsGail 398
                  ++f++v+fay  + +     +l++ ++   ++alvGP GaGkstll+l+l+  +P++G+i+
  MMETSP1137-20121227|3850_1 464 VLAFQNVSFAYSGKKEDYLYTNLEFGIDCDSRIALVGPNGAGKSTLLKLMLQEIEPTEGEIR 525
                 479********************************************************997 PP

  == domain 4    score: 9.5 bits;  conditional E-value: 0.0011
   TIGR02204 475 vtLsGGqkqriaiarailkdapiLLLdeatsaLdaeseqlvqqaleel 522
                  tLs G + r+      l++  +LLLde t+ Ld +  + +  a+++ 
  MMETSP1137-20121227|3850_1 594 KTLSPGFRARLVFCLMSLRNPHLLLLDEPTNPLDMDMIDSLALAIKSF 641
                 589*******************************99887777777655 PP

>> TIGR03269  met_CoM_red_A2: methyl coenzyme M reductase system, component A2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   0.0     0.019       1.3       3      45 ..     155     197 ..     150     206 .. 0.74
   2 !   36.7   0.0     6e-12   3.9e-10     418     523 ..     288     391 ..     269     398 .. 0.81
   3 !   11.1   0.0   0.00033     0.022     306     341 ..     489     524 ..     465     530 .. 0.84
   4 !   19.6   0.0   8.7e-07   5.8e-05     424     497 ..     592     661 ..     581     678 .. 0.86

  Alignments for each domain:
  == domain 1    score: 5.3 bits;  conditional E-value: 0.019
   TIGR03269   3 venltkkfdglevlknisleleeGevlGilGksGaGksvllhl 45 
                 +e    ++ g++ +++  lel  G+  G++ + G+Gks ll+ 
  MMETSP1137-20121227|3850_1 155 IESFSISLFGQQLFEDQTLELTYGHRYGLIAQNGSGKSTLLKC 197
                 5556666667777788888888888888888888888888765 PP

  == domain 2    score: 36.7 bits;  conditional E-value: 6e-12
   TIGR03269 418 keildklpdelseGerhrvalaqvlikeprivildeptGtmdpitkvkvaesilkareeleetfvivshdmdfvlevcdraa.lmrdGkivki.Gdpeeiveelteee 523
                 +++++k ++++s G r rvalaq l  +p +++ldept  +d  + v +++ + k     +   ++ sh  df++ vc ++  l  d +++   G+ +  v+  te+e
  MMETSP1137-20121227|3850_1 288 QKMMQKATKDMSGGWRMRVALAQALFVKPMLLVLDEPTNHLDLGACVWLEDYLSK----WDSILLLTSHSADFLNGVCSKIYhLTVDKRLMLYgGNYDTYVRTRTENE 391
                 57899*************************************9999999998876....577899*************998514455555444155566677777766 PP

  == domain 3    score: 11.1 bits;  conditional E-value: 0.00033
   TIGR03269 306 evkekeifGlvGtsGaGkttlskilaGvleptsGev 341
                  +       lvG  GaGk+tl k+++  +ept+Ge+
  MMETSP1137-20121227|3850_1 489 GIDCDSRIALVGPNGAGKSTLLKLMLQEIEPTEGEI 524
                 555555567999999999999999999999999997 PP

  == domain 4    score: 19.6 bits;  conditional E-value: 8.7e-07
   TIGR03269 424 lpdelseGerhrvalaqvlikeprivildeptGtmdpitkvkvaesilkareeleetfvivshdmdfvlevcdr 497
                 l ++ls G r r+ +  + +++p++++ldept  +d    +++ +s+  a + ++   v+vshd  ++ +v + 
  MMETSP1137-20121227|3850_1 592 LIKTLSPGFRARLVFCLMSLRNPHLLLLDEPTNPLD----MDMIDSLALAIKSFNGGVVLVSHDFRLLEQVAEN 661
                 55789999999999999999***********98777....57789999999999999******99999888765 PP

>> TIGR02982  heterocyst_DevA: ABC exporter ATP-binding subunit, DevA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   0.0     0.099       6.6      18      53 ..     165     200 ..     156     224 .. 0.88
   2 !   34.9   0.0   3.7e-11   2.5e-09     112     174 ..     267     330 ..     259     367 .. 0.86
   3 !   11.8   0.0   0.00042     0.028       3      62 ..     466     524 ..     464     531 .. 0.82
   4 !   20.5   0.0   9.4e-07   6.2e-05     132     215 ..     586     666 ..     567     671 .. 0.84

  Alignments for each domain:
  == domain 1    score: 4.1 bits;  conditional E-value: 0.099
   TIGR02982  18 kqvlfdinleiepgeiviltGpsGsGkttlltligg 53 
                 +q++ d  le++ g    l  + GsGk tll  +++
  MMETSP1137-20121227|3850_1 165 QQLFEDQTLELTYGHRYGLIAQNGSGKSTLLKCVAA 200
                 68888999999999999999***********98876 PP

  == domain 2    score: 34.9 bits;  conditional E-value: 3.7e-11
   TIGR02982 112 klsakeakakaeelleavgleerl.dykpedlsgGqkqrvaiaralvarPklvladePtaaldk 174
                 k+  ++ +++a ell  +g+ +++ ++  +d+sgG + rva+a+al  +P l++ dePt  ld 
  MMETSP1137-20121227|3850_1 267 KMDPSTFEKRAGELLFGLGFSQKMmQKATKDMSGGWRMRVALAQALFVKPMLLVLDEPTNHLDL 330
                 5566777899999******99876267789********************************96 PP

  == domain 3    score: 11.8 bits;  conditional E-value: 0.00042
   TIGR02982   3 kirelnhyygkgelrkqvlfdinleiepgeiviltGpsGsGkttlltligglrsvqeGel 62 
                 + ++++  y +g+++  +  ++++ i+ +  + l Gp G+Gk tll l+    +  eGe+
  MMETSP1137-20121227|3850_1 466 AFQNVSFAY-SGKKEDYLYTNLEFGIDCDSRIALVGPNGAGKSTLLKLMLQEIEPTEGEI 524
                 566676666.57778888899999************************987777777776 PP

  == domain 4    score: 20.5 bits;  conditional E-value: 9.4e-07
   TIGR02982 132 eerldykpedlsgGqkqrvaiaralvarPklvladePtaaldkksgrevvellqklareqgttillvthdnrild.vadrivkme 215
                 +++     + ls G + r+ +      +P+l+l dePt  ld     ++++ l    +  +  ++lv hd r+l+ va+ i   e
  MMETSP1137-20121227|3850_1 586 GDKQTNLIKTLSPGFRARLVFCLMSLRNPHLLLLDEPTNPLDM----DMIDSLALAIKSFNGGVVLVSHDFRLLEqVAENIWVCE 666
                 5667777899********************************7....578888888889999**********9964788776555 PP

>> TIGR01277  thiQ: thiamine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.5   0.0   0.00055     0.036      18      55 ..     172     209 ..     159     230 .. 0.82
   2 !   20.8   0.0   7.7e-07   5.1e-05     120     199 ..     289     364 ..     274     373 .. 0.77
   3 !   24.9   0.0   4.4e-08   2.9e-06      13      58 ..     482     527 ..     465     537 .. 0.81
   4 !   14.5   0.0   6.5e-05    0.0043     122     207 ..     589     670 ..     574     675 .. 0.82

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 0.00055
   TIGR01277  18 dlsveaGervailGesGaGkstllnliaGflepasGei 55 
                  l++  G+r  ++ + G+Gkstll+ +a  + p+   i
  MMETSP1137-20121227|3850_1 172 TLELTYGHRYGLIAQNGSGKSTLLKCVAARMVPIPEFI 209
                 5788899**********************999986554 PP

  == domain 2    score: 20.8 bits;  conditional E-value: 7.7e-07
   TIGR01277 120 dylerlpeelsGGqrqrvalarclvrekpillldepfsaldpklreemlalvkkladekkltlllvthslsdaaaiasqv 199
                 +++++  +++sGG r rvala+ l  +  +l+ldep   ld          ++   ++ +  lll +hs + + ++ s++
  MMETSP1137-20121227|3850_1 289 KMMQKATKDMSGGWRMRVALAQALFVKPMLLVLDEPTNHLDLGAC----VWLEDYLSKWDSILLLTSHSADFLNGVCSKI 364
                 57899999****************99888999*****99996433....3445555666677777777776666666665 PP

  == domain 3    score: 24.9 bits;  conditional E-value: 4.4e-08
   TIGR01277  13 lplefdlsveaGervailGesGaGkstllnliaGflepasGeikvn 58 
                 l+ ++++ ++   r+a++G+ GaGkstll+l+   +ep++Gei+ n
  MMETSP1137-20121227|3850_1 482 LYTNLEFGIDCDSRIALVGPNGAGKSTLLKLMLQEIEPTEGEIRRN 527
                 4455666788889*****************************9866 PP

  == domain 4    score: 14.5 bits;  conditional E-value: 6.5e-05
   TIGR01277 122 lerlpeelsGGqrqrvalarclvrekpillldepfsaldpklreemlalvkkladekkltlllvthslsdaaaiasqvvvvedGki 207
                    l + ls G r r+ +    +r+  +llldep   ld  + +  lal  k+    +  ++lv+h+   + ++a+++ v e+  i
  MMETSP1137-20121227|3850_1 589 QTNLIKTLSPGFRARLVFCLMSLRNPHLLLLDEPTNPLDMDMID-SLALAIKS---FNGGVVLVSHDFRLLEQVAENIWVCEHKTI 670
                 5668889********999888899999************87654.45665554...56789********99999999998887655 PP

>> TIGR02142  modC_ABC: molybdate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   0.0     0.042       2.8      24      45 ..     179     200 ..     158     212 .. 0.83
   2 !   32.4   0.0   1.8e-10   1.2e-08     122     166 ..     288     332 ..     266     368 .. 0.82
   3 !   12.9   0.0   0.00015      0.01      16      57 ..     486     527 ..     475     542 .. 0.87
   4 !   20.8   0.0   6.2e-07   4.1e-05     129     210 ..     593     670 ..     572     694 .. 0.89

  Alignments for each domain:
  == domain 1    score: 4.9 bits;  conditional E-value: 0.042
   TIGR02142  24 gvtalFGrsGsGktslirliaG 45 
                  + +l  + GsGk++l++++a 
  MMETSP1137-20121227|3850_1 179 HRYGLIAQNGSGKSTLLKCVAA 200
                 56788999************96 PP

  == domain 2    score: 32.4 bits;  conditional E-value: 1.8e-10
   TIGR02142 122 ehLleRlpgkLsGGekqRvaigRAlLssPeLLlmDePLaaLDekr 166
                 ++++++ ++++sGG + Rva++ Al  +P LL++DeP   LD   
  MMETSP1137-20121227|3850_1 288 QKMMQKATKDMSGGWRMRVALAQALFVKPMLLVLDEPTNHLDLGA 332
                 468999***********************************9765 PP

  == domain 3    score: 12.9 bits;  conditional E-value: 0.00015
   TIGR02142  16 vdlelpgkgvtalFGrsGsGktslirliaGLtrpdegeivld 57 
                 +++ ++ + ++al G  G+Gk++l++l+   + p+egei  +
  MMETSP1137-20121227|3850_1 486 LEFGIDCDSRIALVGPNGAGKSTLLKLMLQEIEPTEGEIRRN 527
                 5677788889****************************9765 PP

  == domain 4    score: 20.8 bits;  conditional E-value: 6.2e-07
   TIGR02142 129 pgkLsGGekqRvaigRAlLssPeLLlmDePLaaLDekrkkeilPyLerlsaelkiPilyvsHsldevarladrvvvledGrv 210
                  ++Ls G + R       L +P+LLl+DeP   LD+     ++  L    ++++  +++vsH++  ++++a+++ v e+  +
  MMETSP1137-20121227|3850_1 593 IKTLSPGFRARLVFCLMSLRNPHLLLLDEPTNPLDMD----MIDSLALAIKSFNGGVVLVSHDFRLLEQVAENIWVCEHKTI 670
                 5789*******************************96....677788888999*********************99987665 PP

>> TIGR01978  sufC: FeS assembly ATPase SufC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.0   9.2e-05    0.0061       2      48 ..     154     200 ..     153     205 .. 0.91
   2 !   22.7   0.0   1.8e-07   1.2e-05     111     228 ..     265     378 ..     257     387 .. 0.86
   3 !   14.8   0.0   4.5e-05     0.003      17      59 ..     484     524 ..     472     530 .. 0.78
   4 !   19.1   0.0   2.2e-06   0.00015     142     212 ..     593     660 ..     537     671 .. 0.85

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 9.2e-05
   TIGR01978   2 kikdlhvsvedkeiLkglnlevkkGevhaimGpnGsGkstLskvlag 48 
                 ki+ +++s+  +++ ++ +le++ G+ + ++ +nGsGkstL k +a 
  MMETSP1137-20121227|3850_1 154 KIESFSISLFGQQLFEDQTLELTYGHRYGLIAQNGSGKSTLLKCVAA 200
                 688889999999******************************99986 PP

  == domain 2    score: 22.7 bits;  conditional E-value: 1.8e-07
   TIGR01978 111 eeeldllefekllkeklelleldeelleRslneGfsGGekkrneilqlallePklaiLDeiDsGlDvDalkivaegvnklreeekalliithyerllelikPdvvhvlldGrivksGd 228
                  +++d + fek   e l  l ++++++++   +  sGG + r  + q ++++P l +LDe    lD+ a   + + ++k+   ++ ll+ +h   +l+ +  +  h+ +d r++  G+
  MMETSP1137-20121227|3850_1 265 LDKMDPSTFEKRAGELLFGLGFSQKMMQKAT-KDMSGGWRMRVALAQALFVKPMLLVLDEPTNHLDLGACVWLEDYLSKW---DSILLLTSHSADFLNGVCSKIYHLTVDKRLMLYGG 378
                 5678889999999999999999999999875.679*********************************988887777776...45688889999999999999999999988877665 PP

  == domain 3    score: 14.8 bits;  conditional E-value: 4.5e-05
   TIGR01978  17 kglnlevkkGevhaimGpnGsGkstLskvlaghekyevtsGei 59 
                 ++l+  ++     a++GpnG+GkstL k +    ++e t+Gei
  MMETSP1137-20121227|3850_1 484 TNLEFGIDCDSRIALVGPNGAGKSTLLKLMLQ--EIEPTEGEI 524
                 56667777777789*************98875..455566666 PP

  == domain 4    score: 19.1 bits;  conditional E-value: 2.2e-06
   TIGR01978 142 neGfsGGekkrneilqlallePklaiLDeiDsGlDvDalkivaegvnklreeekalliithyerllelikP 212
                  +  s G + r   + ++l +P+l +LDe    lD+D +  +a  ++++   + ++++++h  rlle+++ 
  MMETSP1137-20121227|3850_1 593 IKTLSPGFRARLVFCLMSLRNPHLLLLDEPTNPLDMDMIDSLALAIKSF---NGGVVLVSHDFRLLEQVAE 660
                 45678888999999***********************999998888766...679************9874 PP

>> TIGR03771  anch_rpt_ABC: anchored repeat-type ABC transporter, ATP-binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   0.0     0.048       3.2       2      28 ..     174     200 ..     173     211 .. 0.85
   2 !   27.8   0.0   5.8e-09   3.9e-07     105     181 ..     289     362 ..     285     374 .. 0.80
   3 !   21.2   0.0   6.5e-07   4.3e-05       7      39 ..     494     526 ..     488     542 .. 0.88
   4 !   15.6   0.0   3.4e-05    0.0022     111     185 ..     593     664 ..     576     678 .. 0.81

  Alignments for each domain:
  == domain 1    score: 5.2 bits;  conditional E-value: 0.048
   TIGR03771   2 svdkGellgllGpnGaGkttllrailg 28 
                 ++  G+  gl+  nG+Gk+tll+++ +
  MMETSP1137-20121227|3850_1 174 ELTYGHRYGLIAQNGSGKSTLLKCVAA 200
                 56678889***************9876 PP

  == domain 2    score: 27.8 bits;  conditional E-value: 5.8e-09
   TIGR03771 105 eladrpvGelsGGqrqrvlvaralavkpslllldepftGldlpsqellvelfeelagegtailmtthdlaeavatcd 181
                 ++ +++  ++sGG r rv +a+al vkp ll+ldep   ldl +   l + +   ++ ++ +l+t+h       +c+
  MMETSP1137-20121227|3850_1 289 KMMQKATKDMSGGWRMRVALAQALFVKPMLLVLDEPTNHLDLGACVWLEDYL---SKWDSILLLTSHSADFLNGVCS 362
                 567788899*********************************9998888764...5556666677776544444555 PP

  == domain 3    score: 21.2 bits;  conditional E-value: 6.5e-07
   TIGR03771   7 ellgllGpnGaGkttllrailglikvakGsvkv 39 
                   ++l+GpnGaGk+tll+ +l  i++++G+++ 
  MMETSP1137-20121227|3850_1 494 SRIALVGPNGAGKSTLLKLMLQEIEPTEGEIRR 526
                 5699**************************986 PP

  == domain 4    score: 15.6 bits;  conditional E-value: 3.4e-05
   TIGR03771 111 vGelsGGqrqrvlvaralavkpslllldepftGldlpsqellvelfeelagegtailmtthdlaeavatcdrvvl 185
                 +  ls G r r++       +p+lllldep   ld+  +++l+  ++++ g    +++++hd+    ++++ + +
  MMETSP1137-20121227|3850_1 593 IKTLSPGFRARLVFCLMSLRNPHLLLLDEPTNPLDMDMIDSLALAIKSFNG---GVVLVSHDFRLLEQVAENIWV 664
                 7789*******9999888899******************999877776654...578888887666666665555 PP

>> TIGR00972  3a0107s01c2: phosphate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0       8.3   5.5e+02     127     148 ..      20      41 ..       4      44 .. 0.77
   2 !    9.3   0.0    0.0021      0.14       3      48 ..     154     199 ..     152     211 .. 0.84
   3 !   26.2   0.0   1.4e-08   9.4e-07     138     189 ..     291     342 ..     266     390 .. 0.83
   4 !   14.5   0.0   5.4e-05    0.0036       3      49 ..     466     515 ..     464     547 .. 0.73
   5 !   18.2   0.0   3.9e-06   0.00026     133     214 ..     584     663 ..     566     688 .. 0.86

  Alignments for each domain:
  == domain 1    score: -2.5 bits;  conditional E-value: 8.3
   TIGR00972 127 kaalwdevkdklkksalsLsGG 148
                 ++ + de +++l+k+++++ GG
  MMETSP1137-20121227|3850_1  20 DSEMTDEQRQRLEKQGMGIHGG 41 
                 457899999*********9999 PP

  == domain 2    score: 9.3 bits;  conditional E-value: 0.0021
   TIGR00972   3 evknlklfygekealkdvnleikknkvtaliGpsGcGkstllrsln 48 
                 ++++++++   ++  +d +le++  +  +li   G+Gkstll+++ 
  MMETSP1137-20121227|3850_1 154 KIESFSISLFGQQLFEDQTLELTYGHRYGLIAQNGSGKSTLLKCVA 199
                 6677777777788899999999999999***************984 PP

  == domain 3    score: 26.2 bits;  conditional E-value: 1.4e-08
   TIGR00972 138 lkksalsLsGGqqqrlciaralavePevlLlDePtsaLDpiatekieeliqe 189
                 ++k++  +sGG + r+++a+al v+P +l+lDePt  LD  a   +e+ +++
  MMETSP1137-20121227|3850_1 291 MQKATKDMSGGWRMRVALAQALFVKPMLLVLDEPTNHLDLGACVWLEDYLSK 342
                 5677789********************************9999998888765 PP

  == domain 4    score: 14.5 bits;  conditional E-value: 5.4e-05
   TIGR00972   3 evknlklfygeke...alkdvnleikknkvtaliGpsGcGkstllrslnr 49 
                 + +n+++ y+ k+     +++++ i  ++ +al+Gp G+Gkstll+ + +
  MMETSP1137-20121227|3850_1 466 AFQNVSFAYSGKKedyLYTNLEFGIDCDSRIALVGPNGAGKSTLLKLMLQ 515
                 567778878655434345788889999999***************97643 PP

  == domain 5    score: 18.2 bits;  conditional E-value: 3.9e-06
   TIGR00972 133 evkdklkksalsLsGGqqqrlciaralavePevlLlDePtsaLDpiatekieeliqeLkkkytivivthnmqqaarvsdkta 214
                    dk  +   +Ls G + rl+       +P++lLlDePt  LD  +  ++   i++ +    +v+v h++   ++v++++ 
  MMETSP1137-20121227|3850_1 584 VTGDKQTNLIKTLSPGFRARLVFCLMSLRNPHLLLLDEPTNPLDMDMIDSLALAIKSFNG--GVVLVSHDFRLLEQVAENIW 663
                 556777777889**********9999999******************9999999998865..799*****999999998765 PP

>> TIGR02770  nickel_nikD: nickel import ATP-binding protein NikD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.0     0.079       5.2       3      30 ..     169     196 ..     167     207 .. 0.80
   2 !   24.5   0.0   4.9e-08   3.2e-06     112     169 ..     284     341 ..     262     368 .. 0.84
   3 !    8.0   0.0    0.0053      0.35       3      47 ..     484     524 ..     482     534 .. 0.77
   4 !   30.0   0.0     1e-09   6.8e-08     125     204 ..     595     670 ..     590     692 .. 0.91

  Alignments for each domain:
  == domain 1    score: 4.2 bits;  conditional E-value: 0.079
   TIGR02770   3 qdvnlslkrgkvlalvGesGsGksltal 30 
                 +d  l+l  g+  +l+ + GsGks+  +
  MMETSP1137-20121227|3850_1 169 EDQTLELTYGHRYGLIAQNGSGKSTLLK 196
                 56679999****************7543 PP

  == domain 2    score: 24.5 bits;  conditional E-value: 4.9e-08
   TIGR02770 112 LeeaeevlkkypfelsGGmlqRvmialallleaplliaDePttdlDvvvqaevLklle 169
                 L  ++++++k   ++sGG   Rv +a al +++ ll+ DePt  lD+ + + + ++l+
  MMETSP1137-20121227|3850_1 284 LGFSQKMMQKATKDMSGGWRMRVALAQALFVKPMLLVLDEPTNHLDLGACVWLEDYLS 341
                 5557899***************************************988776555554 PP

  == domain 3    score: 8.0 bits;  conditional E-value: 0.0053
   TIGR02770   3 qdvnlslkrgkvlalvGesGsGksltalailglldkeltktsGei 47 
                 +++++ + ++  +alvG  G+Gks+  + +l+    e+  t+Gei
  MMETSP1137-20121227|3850_1 484 TNLEFGIDCDSRIALVGPNGAGKSTLLKLMLQ----EIEPTEGEI 524
                 68999*******************86555444....344455554 PP

  == domain 4    score: 30.0 bits;  conditional E-value: 1e-09
   TIGR02770 125 elsGGmlqRvmialallleaplliaDePttdlDvvvqaevLklleelrekrglgillithDlgvvaeladevavmekGki 204
                  ls G   R++  l +l ++ ll+ DePt  lD++    +++ l    ++++ g++l++hD++ + ++a+++ v e+  i
  MMETSP1137-20121227|3850_1 595 TLSPGFRARLVFCLMSLRNPHLLLLDEPTNPLDMD----MIDSLALAIKSFNGGVVLVSHDFRLLEQVAENIWVCEHKTI 670
                 589999***************************75....68999999999************************988766 PP

>> TIGR01846  type_I_sec_HlyB: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.6   0.0   1.8e-10   1.2e-08     472     626 ..     167     330 ..     157     342 .. 0.76
   2 !   20.6   0.0   3.8e-07   2.5e-05     456     514 ..     465     524 ..     461     527 .. 0.88
   3 !   10.1   0.0   0.00055     0.036     593     666 ..     595     667 ..     588     676 .. 0.80

  Alignments for each domain:
  == domain 1    score: 31.6 bits;  conditional E-value: 1.8e-10
   TIGR01846 472 vlsnlsldikaGeviGivGpsGsGkstltkllq.rl.yvPekGrvlvdgvdlaladPawlrrqvgvvlqenvlfsrsirdnialakPaise.ekviaaaklaGahdfiselkq.....GyetevgekGa.alsGGqrqrialaralvanPrilildeatsaldy 626
                 ++++ +l+++ G+  G++ + GsGkstl k +  r+  +Pe   +   + +    d +++   +  v  e+  +++   d ++ + P+ +  e + +         f ++  +     G+ +++ +k +  +sGG r r+ala+al ++P +l+lde t  ld 
  MMETSP1137-20121227|3850_1 167 LFEDQTLELTYGHRYGLIAQNGSGKSTLLKCVAaRMvPIPEFIDIWFLDREAQPSDKSAVDVVIDTVRLEKERLEKLEEDIMCESGPEDPRlESIYEKLDKMDPSTFEKRAGEllfglGFSQKMMQKATkDMSGGWRMRVALAQALFVKPMLLVLDEPTNHLDL 330
                 678889************************98624314778777777777777778887777777777777777777777778888988762444444444444555544332233339999988886527*******************************97 PP

  == domain 2    score: 20.6 bits;  conditional E-value: 3.8e-07
   TIGR01846 456 iefenirfrykedspe.vlsnlsldikaGeviGivGpsGsGkstltkllqrlyvPekGrv 514
                 + f+n+ f y+  + + + +nl++ i     i +vGp G+Gkstl kl+ +   P +G++
  MMETSP1137-20121227|3850_1 465 LAFQNVSFAYSGKKEDyLYTNLEFGIDCDSRIALVGPNGAGKSTLLKLMLQEIEPTEGEI 524
                 689*******9877661568****************************988888888876 PP

  == domain 3    score: 10.1 bits;  conditional E-value: 0.00055
   TIGR01846 593 alsGGqrqrialaralvanPrilildeatsaldyeseavimrnlreickgrtviiiahrlstvra.adrilvlek 666
                 +ls G r r+      + nP++l+lde t  ld++  +++   +++   g  v+ ++h +  + + a++i v e+
  MMETSP1137-20121227|3850_1 595 TLSPGFRARLVFCLMSLRNPHLLLLDEPTNPLDMDMIDSLALAIKSFNGG--VVLVSHDFRLLEQvAENIWVCEH 667
                 6999******************************9999998888877665..55556655555442667777665 PP

>> TIGR03005  ectoine_ehuA: ectoine/hydroxyectoine ABC transporter, ATP-binding protein EhuA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   0.0      0.02       1.3      17      46 ..     169     198 ..     155     207 .. 0.87
   2 !   31.6   0.0   2.9e-10   1.9e-08     118     218 ..     268     365 ..     262     397 .. 0.80
   3 !   13.7   0.0   8.8e-05    0.0058      18      58 ..     485     525 ..     471     540 .. 0.83
   4 !   12.2   0.0   0.00025     0.017     137     219 ..     586     664 ..     557     678 .. 0.83

  Alignments for each domain:
  == domain 1    score: 6.0 bits;  conditional E-value: 0.02
   TIGR03005  17 dglelevaaGekvaliGpsGsGkstilril 46 
                 ++  le++ G++  li   GsGkst+l+ +
  MMETSP1137-20121227|3850_1 169 EDQTLELTYGHRYGLIAQNGSGKSTLLKCV 198
                 566789999******************975 PP

  == domain 2    score: 31.6 bits;  conditional E-value: 2.9e-10
   TIGR03005 118 varaeaekravelldmvGladka.dalpaqlsGGqkqrvaiaralalrpkvllfdevtsaldpelveevlnvlrrlasetdltmllvthemgfarefadrvl 218
                 + ++  ekra ell  +G+++k+ ++    +sGG + rva+a+al ++p +l++de+t  ld   +      l +  s+ d  +ll +h   f + ++ ++ 
  MMETSP1137-20121227|3850_1 268 MDPSTFEKRAGELLFGLGFSQKMmQKATKDMSGGWRMRVALAQALFVKPMLLVLDEPTNHLDLGACV----WLEDYLSKWDSILLLTSHSADFLNGVCSKIY 365
                 777889***************972556778*******************************976653....3566667777788888888888777777665 PP

  == domain 3    score: 13.7 bits;  conditional E-value: 8.8e-05
   TIGR03005  18 glelevaaGekvaliGpsGsGkstilrilmtletideGsik 58 
                 +le+ ++   ++al+Gp G+Gkst+l++++   +  eG+i+
  MMETSP1137-20121227|3850_1 485 NLEFGIDCDSRIALVGPNGAGKSTLLKLMLQEIEPTEGEIR 525
                 6788899999*****************88765555667765 PP

  == domain 4    score: 12.2 bits;  conditional E-value: 0.00025
   TIGR03005 137 adkadalpaqlsGGqkqrvaiaralalrpkvllfdevtsaldpelveevlnvlrrlasetdltmllvthemgfarefadrvlf 219
                 +dk+ +l   ls G + r+        +p++ll+de+t  ld ++++ +   ++ +       ++lv+h++++ +++a+ +  
  MMETSP1137-20121227|3850_1 586 GDKQTNLIKTLSPGFRARLVFCLMSLRNPHLLLLDEPTNPLDMDMIDSLALAIKSFN----GGVVLVSHDFRLLEQVAENIWV 664
                 69999999**********9999887789******************99877777654....4678999999999999887765 PP

>> TIGR03797  NHLM_micro_ABC2: NHLM bacteriocin system ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   0.0      0.01      0.67     463     498 ..     162     197 ..     149     204 .. 0.86
   2 !   19.2   0.0   1.1e-06   7.4e-05     582     620 ..     291     329 ..     287     346 .. 0.92
   3 !   27.5   0.0   3.4e-09   2.2e-07     453     510 ..     466     524 ..     460     527 .. 0.89
   4 !    8.9   0.0    0.0015       0.1     587     646 ..     594     653 ..     588     671 .. 0.84

  Alignments for each domain:
  == domain 1    score: 6.2 bits;  conditional E-value: 0.01
   TIGR03797 463 kdgplvLddvslkiepGefvaivGaSGsGKStllrl 498
                   g++ ++d +l+   G   +++ + GsGKStll+ 
  MMETSP1137-20121227|3850_1 162 LFGQQLFEDQTLELTYGHRYGLIAQNGSGKSTLLKC 197
                 55788999999***********************85 PP

  == domain 2    score: 19.2 bits;  conditional E-value: 1.1e-06
   TIGR03797 582 isegggtlSGGQrQRlliAralvrkPrillfDEATSALD 620
                 ++++++ +SGG r R+ +A+al  kP +l++DE T  LD
  MMETSP1137-20121227|3850_1 291 MQKATKDMSGGWRMRVALAQALFVKPMLLVLDEPTNHLD 329
                 6678899*****************************999 PP

  == domain 3    score: 27.5 bits;  conditional E-value: 3.4e-09
   TIGR03797 453 evdrvtFrYekdgp.lvLddvslkiepGefvaivGaSGsGKStllrlLLgFekPesGsv 510
                 + ++v+F+Y+   +     ++ + i+    +a+vG+ G+GKStll+l+L   +P++G++
  MMETSP1137-20121227|3850_1 466 AFQNVSFAYSGKKEdYLYTNLEFGIDCDSRIALVGPNGAGKSTLLKLMLQEIEPTEGEI 524
                 679******86655156689******************************999999998 PP

  == domain 4    score: 8.9 bits;  conditional E-value: 0.0015
   TIGR03797 587 gtlSGGQrQRlliAralvrkPrillfDEATSALDNrtQaiVsesleklkvtRiviAHRLS 646
                 +tlS G r Rl+      r P++ll+DE T  LD  +      +++ ++   +++ H   
  MMETSP1137-20121227|3850_1 594 KTLSPGFRARLVFCLMSLRNPHLLLLDEPTNPLDMDMIDSLALAIKSFNGGVVLVSHDFR 653
                 699*******************************99999999999999988888888554 PP

>> TIGR02324  CP_lyasePhnL: phosphonate C-P lyase system protein PhnL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.9   0.0   0.00036     0.024      23      57 ..     167     201 ..     161     217 .. 0.88
   2 !   25.6   0.0   2.3e-08   1.5e-06     122     181 ..     270     329 ..     253     337 .. 0.86
   3 !   17.4   0.0   7.8e-06   0.00052      25      68 ..     484     527 ..     470     557 .. 0.82
   4 ?    6.0   0.0     0.023       1.5     149     188 ..     595     634 ..     587     664 .. 0.70

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 0.00036
   TIGR02324  23 vlkevsleveaGelvalsGksGaGkstllkslyan 57 
                  +++ +le++ G+   l+ + G+Gkstllk++ a 
  MMETSP1137-20121227|3850_1 167 LFEDQTLELTYGHRYGLIAQNGSGKSTLLKCVAAR 201
                 567789999**********************9765 PP

  == domain 2    score: 25.6 bits;  conditional E-value: 2.3e-08
   TIGR02324 122 reearakakellarlniperLWslaPatfsGGekqRvniaraliadrPiLL.LdePtasLd 181
                   + +++a ell  l  ++++ + a    sGG + Rv +a+al + +P+LL LdePt  Ld
  MMETSP1137-20121227|3850_1 270 PSTFEKRAGELLFGLGFSQKMMQKATKDMSGGWRMRVALAQALFV-KPMLLvLDEPTNHLD 329
                 5567899**************************************.7766549*****998 PP

  == domain 3    score: 17.4 bits;  conditional E-value: 7.8e-06
   TIGR02324  25 kevsleveaGelvalsGksGaGkstllkslyanYlpesgrilvr 68 
                 +++++ ++    +al G+ GaGkstllk + ++  p  g+i+ +
  MMETSP1137-20121227|3850_1 484 TNLEFGIDCDSRIALVGPNGAGKSTLLKLMLQEIEPTEGEIRRN 527
                 678888899999*************************9999765 PP

  == domain 4    score: 6.0 bits;  conditional E-value: 0.023
   TIGR02324 149 tfsGGekqRvniaraliadrPiLLLdePtasLdaanrkvv 188
                 t s G + R+      + +  +LLLdePt  Ld   ++  
  MMETSP1137-20121227|3850_1 595 TLSPGFRARLVFCLMSLRNPHLLLLDEPTNPLDMDMIDSL 634
                 7888888888888777775667899*******98877633 PP

>> TIGR00955  3a01204: pigment precursor permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.0      0.12       8.2      49      75 ..     176     202 ..     138     205 .. 0.80
   2 !   24.7   0.0   2.7e-08   1.8e-06     162     199 ..     293     330 ..     282     342 .. 0.89
   3 !    8.0   0.0    0.0029      0.19      54      73 ..     496     515 ..     491     527 .. 0.86
   4 !   24.1   0.0     4e-08   2.6e-06     161     206 ..     590     635 ..     583     649 .. 0.87

  Alignments for each domain:
  == domain 1    score: 2.7 bits;  conditional E-value: 0.12
   TIGR00955  49 ksGellAvlGsSGaGKtTLlnalafrs 75 
                   G    ++   G+GK+TLl+ +a r 
  MMETSP1137-20121227|3850_1 176 TYGHRYGLIAQNGSGKSTLLKCVAARM 202
                 555556677789***********9985 PP

  == domain 2    score: 24.7 bits;  conditional E-value: 2.7e-08
   TIGR00955 162 grvkglSgGerkRlalaselltdPilLfcDEPTsGLDs 199
                   +k +SgG r R+ala+ l  +P+lL++DEPT  LD 
  MMETSP1137-20121227|3850_1 293 KATKDMSGGWRMRVALAQALFVKPMLLVLDEPTNHLDL 330
                 45799*******************************95 PP

  == domain 3    score: 8.0 bits;  conditional E-value: 0.0029
   TIGR00955  54 lAvlGsSGaGKtTLlnalaf 73 
                 +A++G+ GaGK+TLl+ + +
  MMETSP1137-20121227|3850_1 496 IALVGPNGAGKSTLLKLMLQ 515
                 89*************98765 PP

  == domain 4    score: 24.1 bits;  conditional E-value: 4e-08
   TIGR00955 161 pgrvkglSgGerkRlalaselltdPilLfcDEPTsGLDsfsaasvv 206
                  + +k+lS G r Rl +    l +P+lL++DEPT  LD  +  s+ 
  MMETSP1137-20121227|3850_1 590 TNLIKTLSPGFRARLVFCLMSLRNPHLLLLDEPTNPLDMDMIDSLA 635
                 5678**********************************98877765 PP

>> TIGR03265  PhnT2: putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.0      0.27        18      17      51 ..     165     199 ..     150     204 .. 0.81
   2 !   30.4   0.0   7.2e-10   4.8e-08     105     167 ..     267     330 ..     263     350 .. 0.84
   3 !   11.0   0.0   0.00057     0.038      21      63 ..     484     526 ..     465     530 .. 0.85
   4 !   16.0   0.0   1.7e-05    0.0011     132     239 ..     593     696 ..     560     698 .. 0.84

  Alignments for each domain:
  == domain 1    score: 2.3 bits;  conditional E-value: 0.27
   TIGR03265  17 ftalkdislsvkkgelvclLGPsGCGkttLLriia 51 
                  + ++d  l+++ g    l+   G Gk+tLL+++a
  MMETSP1137-20121227|3850_1 165 QQLFEDQTLELTYGHRYGLIAQNGSGKSTLLKCVA 199
                 5667788888999999999999***********98 PP

  == domain 2    score: 30.4 bits;  conditional E-value: 7.2e-10
   TIGR03265 105 klkreevaerveelLelvglsgs.eekyPgqlsGGqqqrvaLaralalsPglLLLDePlsaLDa 167
                 k++ +  ++r  elL  +g+s++  +k    +sGG + rvaLa+al ++P lL+LDeP   LD 
  MMETSP1137-20121227|3850_1 267 KMDPSTFEKRAGELLFGLGFSQKmMQKATKDMSGGWRMRVALAQALFVKPMLLVLDEPTNHLDL 330
                 566677788888999888887642689999*****************************99995 PP

  == domain 3    score: 11.0 bits;  conditional E-value: 0.00057
   TIGR03265  21 kdislsvkkgelvclLGPsGCGkttLLriiaGLekqdaGaill 63 
                 +++++ +  +  ++l+GP G Gk+tLL+++    ++++G+i  
  MMETSP1137-20121227|3850_1 484 TNLEFGIDCDSRIALVGPNGAGKSTLLKLMLQEIEPTEGEIRR 526
                 567888889999****************998777788888865 PP

  == domain 4    score: 16.0 bits;  conditional E-value: 1.7e-05
   TIGR03265 132 PgqlsGGqqqrvaLaralalsPglLLLDePlsaLDakvrekLreelkklqrklgvttimvthdqeealslaDrivvmnkgkieqvgtPeeiYeqPatkfvadfvGevn 239
                    ls G + r+ +       P+lLLLDeP   LD  + ++L   +k++        ++v hd     ++a+ i v ++ +i+  ++  + Y++   + +a+ v ++n
  MMETSP1137-20121227|3850_1 593 IKTLSPGFRARLVFCLMSLRNPHLLLLDEPTNPLDMDMIDSLALAIKSFNG----GVVLVSHDFRLLEQVAENIWVCEHKTITPWASDIKAYKKHLRNQMAQDVKRMN 696
                 456888888888888888899*************************99876....4589******999****************999999999988887887777776 PP

>> TIGR03411  urea_trans_UrtD: urea ABC transporter, ATP-binding protein UrtD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.0   0.0    0.0032      0.21       4      52 ..     154     202 ..     152     239 .. 0.89
   2 ?    7.2   0.0     0.012      0.77     120     175 ..     273     329 ..     255     389 .. 0.71
   3 !   22.1   0.0   3.3e-07   2.2e-05      18      61 ..     483     526 ..     463     539 .. 0.79
   4 !   20.9   0.0   7.7e-07   5.1e-05     135     216 ..     587     666 ..     575     672 .. 0.89

  Alignments for each domain:
  == domain 1    score: 9.0 bits;  conditional E-value: 0.0032
   TIGR03411   4 evedvsvsfdgfkalndlslsveegelrviiGpnGaGkttllDvitGkt 52 
                 ++e  s+s  g +  +d +l+++ g+   +i  nG+Gk+tll  ++ ++
  MMETSP1137-20121227|3850_1 154 KIESFSISLFGQQLFEDQTLELTYGHRYGLIAQNGSGKSTLLKCVAARM 202
                 577888888899999999************************9998876 PP

  == domain 2    score: 7.2 bits;  conditional E-value: 0.012
   TIGR03411 120 ekerieevleligLeekadkka.glLshGqkqwLeigmllvqepkllllDePvaGmt 175
                  ++r  e+l  +g ++k+ +ka   +s G + ++ ++  l  +p ll+lDeP+  + 
  MMETSP1137-20121227|3850_1 273 FEKRAGELLFGLGFSQKMMQKAtKDMSGGWRMRVALAQALFVKPMLLVLDEPTNHLD 329
                 55666677777777777766661579**************************97664 PP

  == domain 3    score: 22.1 bits;  conditional E-value: 3.3e-07
   TIGR03411  18 lndlslsveegelrviiGpnGaGkttllDvitGktrpdeGsvlf 61 
                  ++l++ ++ ++  +++GpnGaGk+tll ++   ++p+eG++  
  MMETSP1137-20121227|3850_1 483 YTNLEFGIDCDSRIALVGPNGAGKSTLLKLMLQEIEPTEGEIRR 526
                 57899999999999**************************9975 PP

  == domain 4    score: 20.9 bits;  conditional E-value: 7.7e-07
   TIGR03411 135 ekadkkaglLshGqkqwLeigmllvqepkllllDePvaGmtdeetektaellkelakersvvvvehDmefvrelaekvtvlh 216
                 +k+++   +Ls G + +L   ++ +++p+llllDeP+  +  +  ++ a  +k+ ++   vv+v hD   ++++ae++ v +
  MMETSP1137-20121227|3850_1 587 DKQTNLIKTLSPGFRARLVFCLMSLRNPHLLLLDEPTNPLDMDMIDSLALAIKSFNG--GVVLVSHDFRLLEQVAENIWVCE 666
                 556677889*******************************99999999999999876..6999*************998865 PP

>> TIGR02203  MsbA_lipidA: lipid A export permease/ATP-binding protein MsbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   0.0     0.032       2.1     347     379 ..     166     198 ..     128     211 .. 0.83
   2 !   18.4   0.0     2e-06   0.00014     459     502 ..     285     329 ..     281     336 .. 0.87
   3 !   30.0   0.0   6.2e-10   4.1e-08     332     390 ..     465     524 ..     462     529 .. 0.94
   4 ?    5.6   0.0     0.014      0.96     470     504 ..     595     629 ..     578     671 .. 0.82

  Alignments for each domain:
  == domain 1    score: 4.5 bits;  conditional E-value: 0.032
   TIGR02203 347 ealdsislkveaGevvalvGrsGsGkstlvnll 379
                 + +++  l+++ G++  l+ + GsGkstl++ +
  MMETSP1137-20121227|3850_1 166 QLFEDQTLELTYGHRYGLIAQNGSGKSTLLKCV 198
                 556777899999*****************9876 PP

  == domain 2    score: 18.4 bits;  conditional E-value: 2e-06
   TIGR02203 459 GldtevGengsk.LsGGqRqRlaiaRallkdaPiLiLDeatsaLD 502
                 G+ +++ ++++k +sGG R R+a+a al+    +L+LDe t  LD
  MMETSP1137-20121227|3850_1 285 GFSQKMMQKATKdMSGGWRMRVALAQALFVKPMLLVLDEPTNHLD 329
                 77777777766449****************************999 PP

  == domain 3    score: 30.0 bits;  conditional E-value: 6.2e-10
   TIGR02203 332 vefrnvtfrypgddreal.dsislkveaGevvalvGrsGsGkstlvnllpRFyepdsGei 390
                 + f+nv+f y g++ + l  ++++ ++   ++alvG+ G+Gkstl++l+   +ep++Gei
  MMETSP1137-20121227|3850_1 465 LAFQNVSFAYSGKKEDYLyTNLEFGIDCDSRIALVGPNGAGKSTLLKLMLQEIEPTEGEI 524
                 689*********999988479*************************************99 PP

  == domain 4    score: 5.6 bits;  conditional E-value: 0.014
   TIGR02203 470 kLsGGqRqRlaiaRallkdaPiLiLDeatsaLDne 504
                  Ls G R Rl      l++  +L+LDe t  LD +
  MMETSP1137-20121227|3850_1 595 TLSPGFRARLVFCLMSLRNPHLLLLDEPTNPLDMD 629
                 69******************************986 PP

>> TIGR03258  PhnT: 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0   1.8e-05    0.0012       8      58 ..     152     202 ..     146     235 .. 0.86
   2 !   24.1   0.0   5.4e-08   3.5e-06     114     170 ..     272     329 ..     263     340 .. 0.80
   3 !    9.1   0.0     0.002      0.13      23      65 ..     482     524 ..     464     527 .. 0.78
   4 !    9.7   0.0    0.0013     0.085     129     199 ..     586     651 ..     577     689 .. 0.83

  Alignments for each domain:
  == domain 1    score: 15.8 bits;  conditional E-value: 1.8e-05
   TIGR03258   8 GvvleslrvaygarvvlddlsleieaGellallGksGsGkttllravaGfv 58 
                  v++es++++  ++ +++d +le+  G    l+ + GsGk+tll+ va  +
  MMETSP1137-20121227|3850_1 152 DVKIESFSISLFGQQLFEDQTLELTYGHRYGLIAQNGSGKSTLLKCVAARM 202
                 699********************************************9765 PP

  == domain 2    score: 24.1 bits;  conditional E-value: 5.4e-08
   TIGR03258 114 liaervadalklvqlsda.aarlpaqlsGGqqqrvalaralvvrpdvllldeplsald 170
                   ++r  + l  +++s+   ++  + +sGG + rvala+al v+p +l+ldep   ld
  MMETSP1137-20121227|3850_1 272 TFEKRAGELLFGLGFSQKmMQKATKDMSGGWRMRVALAQALFVKPMLLVLDEPTNHLD 329
                 55666666666667766414567789***************************99998 PP

  == domain 3    score: 9.1 bits;  conditional E-value: 0.002
   TIGR03258  23 vlddlsleieaGellallGksGsGkttllravaGfvkadGGrl 65 
                 +  +l + i+    +al+G+ G+Gk+tll+++   +++  G +
  MMETSP1137-20121227|3850_1 482 LYTNLEFGIDCDSRIALVGPNGAGKSTLLKLMLQEIEPTEGEI 524
                 5678999999999*****************9988888777765 PP

  == domain 4    score: 9.7 bits;  conditional E-value: 0.0013
   TIGR03258 129 sdaaarlpaqlsGGqqqrvalaralvvrpdvllldeplsaldaqlrasvveelkalhrelpeltvlyvthd 199
                 +d  ++l + ls G + r+ +      +p++llldep   ld ++  s+   +k++     +  v+ v+hd
  MMETSP1137-20121227|3850_1 586 GDKQTNLIKTLSPGFRARLVFCLMSLRNPHLLLLDEPTNPLDMDMIDSLALAIKSF-----NGGVVLVSHD 651
                 6888899999**********99999999***************9999988777765.....3455555555 PP

>> TIGR01187  potA: polyamine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.0      0.74        49       2      18 ..     184     200 ..     183     229 .. 0.88
   2 !   31.1   0.0   3.9e-10   2.6e-08      68     132 ..     264     329 ..     261     332 .. 0.88
   3 !    7.1   0.0    0.0083      0.55       1      27 [.     498     524 ..     498     528 .. 0.91
   4 !   13.1   0.0   0.00012    0.0082      97     171 ..     592     662 ..     578     683 .. 0.82
   5 ?    0.4   0.0      0.89        59     128     148 ..     677     697 ..     673     701 .. 0.85

  Alignments for each domain:
  == domain 1    score: 0.7 bits;  conditional E-value: 0.74
   TIGR01187   2 LGpsGsGkttlLrllaG 18 
                 +   GsGk+tlL+ +a 
  MMETSP1137-20121227|3850_1 184 IAQNGSGKSTLLKCVAA 200
                 5678*********9985 PP

  == domain 2    score: 31.1 bits;  conditional E-value: 3.9e-10
   TIGR01187  68 kmrkvpkaeikervkeaLelvql.eefakrkpsqlsGGqrqrvalaravvkkPkiLLlDeplsaLD 132
                 k++k++ ++ ++r  e+L    + +++ ++  +++sGG r rvala+a+  kP +L+lDep   LD
  MMETSP1137-20121227|3850_1 264 KLDKMDPSTFEKRAGELLFGLGFsQKMMQKATKDMSGGWRMRVALAQALFVKPMLLVLDEPTNHLD 329
                 678899999999999998655552678899999****************************99998 PP

  == domain 3    score: 7.1 bits;  conditional E-value: 0.0083
   TIGR01187   1 lLGpsGsGkttlLrllaGleeldsGki 27 
                 l+Gp G+Gk+tlL+l+    e+ +G+i
  MMETSP1137-20121227|3850_1 498 LVGPNGAGKSTLLKLMLQEIEPTEGEI 524
                 78*************999999999987 PP

  == domain 4    score: 13.1 bits;  conditional E-value: 0.00012
   TIGR01187  97 kpsqlsGGqrqrvalaravvkkPkiLLlDeplsaLDkkLrdqmqlelkalqeklGitvvlvthDqeealtmsdri 171
                  ++ ls G r r+ +      +P++LLlDep   LD  + d + l +k+++      vvlv hD +    +++ i
  MMETSP1137-20121227|3850_1 592 LIKTLSPGFRARLVFCLMSLRNPHLLLLDEPTNPLDMDMIDSLALAIKSFNG----GVVLVSHDFRLLEQVAENI 662
                 56789**********99999**********************9999998875....4688999977555555555 PP

  == domain 5    score: 0.4 bits;  conditional E-value: 0.89
   TIGR01187 128 lsaLDkkLrdqmqlelkalqe 148
                 + a  k+Lr+qm +++k+++ 
  MMETSP1137-20121227|3850_1 677 IKAYKKHLRNQMAQDVKRMNA 697
                 568899************976 PP

>> TIGR01193  bacteriocin_ABC: ABC-type bacteriocin transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.6   0.0    0.0038      0.25     472     520 ..     151     198 ..     137     211 .. 0.86
   2 !   17.8   0.0   3.1e-06   0.00021     598     644 ..     283     330 ..     272     356 .. 0.88
   3 !   27.8   0.0   2.9e-09   1.9e-07     474     644 ..     465     628 ..     456     676 .. 0.61

  Alignments for each domain:
  == domain 1    score: 7.6 bits;  conditional E-value: 0.0038
   TIGR01193 472 gdievndvsysyGygsevledislkikknekitlvGlsGsGkstlakll 520
                  d++++  s s  +g++++ed +l+++  ++  l+   GsGkstl k +
  MMETSP1137-20121227|3850_1 151 RDVKIESFSISL-FGQQLFEDQTLELTYGHRYGLIAQNGSGKSTLLKCV 198
                 566666666654.99******************************9975 PP

  == domain 2    score: 17.8 bits;  conditional E-value: 3.1e-06
   TIGR01193 598 plGyqtelseea.ssisgGqkqrlalarallsdskvlildestsnldl 644
                  lG++ ++ ++a   +sgG + r+ala+al+++  +l+lde t +ldl
  MMETSP1137-20121227|3850_1 283 GLGFSQKMMQKAtKDMSGGWRMRVALAQALFVKPMLLVLDEPTNHLDL 330
                 578877776655168*******************************97 PP

  == domain 3    score: 27.8 bits;  conditional E-value: 2.9e-09
   TIGR01193 474 ievndvsysy.Gygse.vledislkikknekitlvGlsGsGkstlakllvkffqaesGeillngks.lkdidkhelrqlinylPqePfifsGsilenlllgakenvsqeeikkaveiaeikddie..klplGyqtelseeassisgGqkqrlalarallsdskvlildestsnldl 644
                 + +++vs+ y G  ++ +  ++++ i+ +++i+lvG  G+Gkstl kl+++  ++++Gei  n++  +   ++h   + +  l + P+ f    l +l+++    ++    kk  ++ e ++ +    ++   qt+l     ++s G + rl +    l + ++l+lde t  ld+
  MMETSP1137-20121227|3850_1 465 LAFQNVSFAYsGKKEDyLYTNLEFGIDCDSRIALVGPNGAGKSTLLKLMLQEIEPTEGEIRRNPHLrFGRYNQH--SEDVLDLEKTPLDF----LRDLFVDGVVTTE---GKKKWDVPEWRAKLGifGVTGDKQTNLI---KTLSPGFRARLVFCLMSLRNPHLLLLDEPTNPLDM 628
                 678999**9944444425689***************************************99976313333333..34444555666554....4444443332222...2333333443333330033333444444...56666666666666666666666666666666665 PP

>> TIGR02314  ABC_MetN: D-methionine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.8   0.0   0.00028     0.018      21      52 ..     168     199 ..     157     207 .. 0.87
   2 !   24.7   0.0   3.5e-08   2.3e-06     109     212 ..     265     365 ..     260     397 .. 0.79
   3 ?    5.1   0.0     0.031         2      22      62 ..     484     524 ..     467     528 .. 0.76
   4 !    9.5   0.0    0.0014     0.094     127     216 ..     581     667 ..     563     694 .. 0.83

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 0.00028
   TIGR02314  21 ldnvslfvpkgqifgvigasgagkstlircvn 52 
                 +++ +l +  g+ +g+i   g+gkstl++cv 
  MMETSP1137-20121227|3850_1 168 FEDQTLELTYGHRYGLIAQNGSGKSTLLKCVA 199
                 5677889999********************96 PP

  == domain 2    score: 24.7 bits;  conditional E-value: 3.5e-08
   TIGR02314 109 lentpkekikrkvtellalvglsdkk.dsypsnlsggqkqrvaiaralasepkvllcdeatsaldpattqsilellkeinrrlgltillithemdvvkricdeva 212
                 l++      +++  ell  +g+s+k  +    ++sgg + rva+a+al  +p +l+ de t  ld  +       l +   + +  +ll +h  d +  +c ++ 
  MMETSP1137-20121227|3850_1 265 LDKMDPSTFEKRAGELLFGLGFSQKMmQKATKDMSGGWRMRVALAQALFVKPMLLVLDEPTNHLDLGACVW----LEDYLSKWDSILLLTSHSADFLNGVCSKIY 365
                 555666778999************972455679********************************987655....455555666667888899999999998875 PP

  == domain 3    score: 5.1 bits;  conditional E-value: 0.031
   TIGR02314  22 dnvslfvpkgqifgvigasgagkstlircvnllekptsgav 62 
                  n+++ +     + ++g  gagkstl++ +    +pt+g++
  MMETSP1137-20121227|3850_1 484 TNLEFGIDCDSRIALVGPNGAGKSTLLKLMLQEIEPTEGEI 524
                 5666666666677899************9877778999976 PP

  == domain 4    score: 9.5 bits;  conditional E-value: 0.0014
   TIGR02314 127 lvgl.sdkkdsypsnlsggqkqrvaiaralasepkvllcdeatsaldpattqsilellkeinrrlgltillithemdvvkricdevavidk 216
                 + g+ +dk+      ls g + r+        +p++ll de t  ld     s+   +k  n      ++l++h++ ++ ++ +++ v ++
  MMETSP1137-20121227|3850_1 581 IFGVtGDKQTNLIKTLSPGFRARLVFCLMSLRNPHLLLLDEPTNPLDMDMIDSLALAIKSFNG----GVVLVSHDFRLLEQVAENIWVCEH 667
                 55552588899999***********9999999*****************99999988888876....578899999999999888877765 PP

>> TIGR01186  proV: glycine betaine/L-proline transport ATP binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.0      0.16        11      11      40 ..     170     199 ..     164     217 .. 0.85
   2 !   22.1   0.0   2.3e-07   1.5e-05      96     161 ..     263     329 ..     257     345 .. 0.91
   3 !   16.8   0.0   9.1e-06    0.0006      14      50 ..     488     524 ..     481     528 .. 0.87
   4 !    8.3   0.0    0.0035      0.23     128     200 ..     594     662 ..     581     671 .. 0.84

  Alignments for each domain:
  == domain 1    score: 2.9 bits;  conditional E-value: 0.16
   TIGR01186  11 dvdleieeGeiiviiGlsGsGkstlvrlln 40 
                 d  le++ G  + +i   GsGkstl++ + 
  MMETSP1137-20121227|3850_1 170 DQTLELTYGHRYGLIAQNGSGKSTLLKCVA 199
                 6778999999999*************9875 PP

  == domain 2    score: 22.1 bits;  conditional E-value: 2.3e-07
   TIGR01186  96 lellkideqerkekalealklvdl.eeyedryPdelsGGmqqrvGlaralaaePdlllmdeafsald 161
                  +l k+d    +++a e+l  +++ ++ +++  +++sGG + rv la+al ++P ll++de+   ld
  MMETSP1137-20121227|3850_1 263 EKLDKMDPSTFEKRAGELLFGLGFsQKMMQKATKDMSGGWRMRVALAQALFVKPMLLVLDEPTNHLD 329
                 5889999999999***********889999********************************99998 PP

  == domain 3    score: 16.8 bits;  conditional E-value: 9.1e-06
   TIGR01186  14 leieeGeiiviiGlsGsGkstlvrllnrliePtaGki 50 
                 + i+    i ++G+ G+Gkstl++l+ + iePt+G+i
  MMETSP1137-20121227|3850_1 488 FGIDCDSRIALVGPNGAGKSTLLKLMLQEIEPTEGEI 524
                 55666667899************************98 PP

  == domain 4    score: 8.3 bits;  conditional E-value: 0.0035
   TIGR01186 128 delsGGmqqrvGlaralaaePdlllmdeafsaldPlirdelqdelvklqkklqktivfithdldealrlgdri 200
                 + ls G + r+        +P lll+de+   ld     ++ d l    k  +  +v+++hd+    ++++ i
  MMETSP1137-20121227|3850_1 594 KTLSPGFRARLVFCLMSLRNPHLLLLDEPTNPLD----MDMIDSLALAIKSFNGGVVLVSHDFRLLEQVAENI 662
                 5689999999988888889***********9999....5888899888899999********87666666666 PP

>> TIGR01184  ntrCD: nitrate ABC transporter, ATP-binding proteins C and D
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   0.0     0.042       2.8       3      34 ..     170     201 ..     168     211 .. 0.85
   2 !   26.6   0.0   1.3e-08   8.6e-07     106     146 ..     289     329 ..     276     345 .. 0.88
   3 !   10.0   0.0    0.0016       0.1       5      43 ..     487     525 ..     483     530 .. 0.85
   4 ?    7.1   0.0     0.011      0.76     109     174 ..     590     651 ..     558     662 .. 0.75

  Alignments for each domain:
  == domain 1    score: 5.3 bits;  conditional E-value: 0.042
   TIGR01184   3 dvdleikkgefislighsgcgkstllnliagl 34 
                 d  le+  g    li   g gkstll  +a  
  MMETSP1137-20121227|3850_1 170 DQTLELTYGHRYGLIAQNGSGKSTLLKCVAAR 201
                 5568888999999**************99865 PP

  == domain 2    score: 26.6 bits;  conditional E-value: 1.3e-08
   TIGR01184 106 eaadkrpeqlsggmkqrvaiaralsirpklllldepfgald 146
                 +  +k ++++sgg + rva+a+al ++p ll+ldep   ld
  MMETSP1137-20121227|3850_1 289 KMMQKATKDMSGGWRMRVALAQALFVKPMLLVLDEPTNHLD 329
                 5678999*****************************99998 PP

  == domain 3    score: 10.0 bits;  conditional E-value: 0.0016
   TIGR01184   5 dleikkgefislighsgcgkstllnliaglekptsgavi 43 
                 ++ i     i+l+g  g gkstll l+    +pt+g ++
  MMETSP1137-20121227|3850_1 487 EFGIDCDSRIALVGPNGAGKSTLLKLMLQEIEPTEGEIR 525
                 5566667789*****************99999**99886 PP

  == domain 4    score: 7.1 bits;  conditional E-value: 0.011
   TIGR01184 109 dkrpeqlsggmkqrvaiaralsirpklllldepfgaldaltreelqekllkiveearvtvlmvthd 174
                    ++ ls g++ r+         p+lllldep   ld     ++ + l   ++  +  v++v+hd
  MMETSP1137-20121227|3850_1 590 TNLIKTLSPGFRARLVFCLMSLRNPHLLLLDEPTNPLDM----DMIDSLALAIKSFNGGVVLVSHD 651
                 445788999*****9988766667***********9996....44444444455555666666666 PP

>> TIGR02633  xylG: D-xylose ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.9   0.0   0.00073     0.048      18      53 ..     169     205 ..     160     246 .. 0.82
   2 !   18.7   0.0   1.6e-06    0.0001     401     439 ..     295     333 ..     257     362 .. 0.88
   3 !    9.0   0.0    0.0014     0.093      21      52 ..     487     519 ..     478     542 .. 0.81
   4 !    9.4   0.0     0.001     0.069     401     437 ..     593     629 ..     579     670 .. 0.84

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 0.00073
   TIGR02633  18 dnidlklraGeivslcGenGaGkstlmkvlsg.vyph 53 
                 ++ +l+l  G   +l  +nG+Gkstl+k +++ + p 
  MMETSP1137-20121227|3850_1 169 EDQTLELTYGHRYGLIAQNGSGKSTLLKCVAArMVPI 205
                 566799999*******************887524555 PP

  == domain 2    score: 18.7 bits;  conditional E-value: 1.6e-06
   TIGR02633 401 iarlsGGnqqkavlakllllnprvlildeptrGvdvGak 439
                    +sGG + +  la+ l ++p +l+ldept  +d+Ga 
  MMETSP1137-20121227|3850_1 295 TKDMSGGWRMRVALAQALFVKPMLLVLDEPTNHLDLGAC 333
                 5678999999*************************9996 PP

  == domain 3    score: 9.0 bits;  conditional E-value: 0.0014
   TIGR02633  21 dlklraGeivslcGenGaGkstlmkv.lsgvyp 52 
                 ++ ++    ++l G nGaGkstl+k+ l  + p
  MMETSP1137-20121227|3850_1 487 EFGIDCDSRIALVGPNGAGKSTLLKLmLQEIEP 519
                 55566677799**************72455666 PP

  == domain 4    score: 9.4 bits;  conditional E-value: 0.001
   TIGR02633 401 iarlsGGnqqkavlakllllnprvlildeptrGvdvG 437
                 i +ls G + + v++ + l np++l+ldept  +d+ 
  MMETSP1137-20121227|3850_1 593 IKTLSPGFRARLVFCLMSLRNPHLLLLDEPTNPLDMD 629
                 7899****************************99985 PP

>> TIGR00954  3a01203: peroxysomal long chain fatty acyl transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.0   2.1e-06   0.00014     422     613 ..     122     327 ..     103     342 .. 0.74
   2 !   13.7   0.0   5.2e-05    0.0034     464     513 ..     478     528 ..     463     534 .. 0.81
   3 !    9.3   0.0    0.0011     0.072     582     640 ..     594     652 ..     583     657 .. 0.91

  Alignments for each domain:
  == domain 1    score: 18.3 bits;  conditional E-value: 2.1e-06
   TIGR00954 422 prveekesaeeesrkselvagrgkveaqdngikfeniplvtPegdvlieeLsfevksGnhlLiiGPnGcGKsslfRilgelWPvygglltkpeegklFyvPqrPYmslgtlRdqiiYPdssed.fker.........glsdkdLeqiLeevkLed..lleregg.........wdavqdWkdvLsgGekqRiamARlfyHkPkfavLDEctsA 613
                 +++ +k  +ee+++k    +g    +++   +k+e   +    g+ l e+ ++e+  G+   +i  nG GKs l + ++      + +  +pe   ++++      s ++  d +i   + e+   e+         g +d  Le i e+++  d    e+  g          +++q     +sgG + R+a+A  ++ kP   vLDE t+ 
  MMETSP1137-20121227|3850_1 122 AEDLDKLTMEEGTHKLAVCTGVLASRKDSRDVKIESFSISL-FGQQLFEDQTLELTYGHRYGLIAQNGSGKSTLLKCVA------ARMVPIPEFIDIWFLDREAQPSDKSAVDVVIDTVRLEKeRLEKleedimcesGPEDPRLESIYEKLDKMDpsTFEKRAGellfglgfsQKMMQKATKDMSGGWRMRVALAQALFVKPMLLVLDEPTNH 327
                 23333333334344444444444445666778999887654.699999*************999*********998764......56677899999999999999999999999997766543133347778888888999999999887765432244555557999999777899999*******************************96 PP

  == domain 2    score: 13.7 bits;  conditional E-value: 5.2e-05
   TIGR00954 464 egdvlieeLsfevksGnhlLiiGPnGcGKsslfR.ilgelWPvygglltkp 513
                 + d l  +L+f +   + + ++GPnG GKs l + +l e+ P+ g  +  p
  MMETSP1137-20121227|3850_1 478 KEDYLYTNLEFGIDCDSRIALVGPNGAGKSTLLKlMLQEIEPTEGEIRRNP 528
                 56789999***********************99835789999988766655 PP

  == domain 3    score: 9.3 bits;  conditional E-value: 0.0011
   TIGR00954 582 dvLsgGekqRiamARlfyHkPkfavLDEctsAvsvdvEdklyelakevgitllsvshrk 640
                   Ls G + R+ +  +    P+  +LDE t+ + +d+ d l  ++k+++  ++ vsh  
  MMETSP1137-20121227|3850_1 594 KTLSPGFRARLVFCLMSLRNPHLLLLDEPTNPLDMDMIDSLALAIKSFNGGVVLVSHDF 652
                 689*********************************************99999999965 PP

>> TIGR01192  chvA: glucan exporter ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.0   4.1e-05    0.0027     469     506 ..     295     332 ..     163     344 .. 0.87
   2 !   21.6   0.0   2.4e-07   1.6e-05     335     392 ..     465     524 ..     458     528 .. 0.89
   3 ?    4.2   0.0     0.045         3     471     506 ..     595     630 ..     584     653 .. 0.87

  Alignments for each domain:
  == domain 1    score: 14.2 bits;  conditional E-value: 4.1e-05
   TIGR01192 469 gnrlsggerqrlaiarailknapilvldeatsaldvet 506
                  + +sgg r r+a+a+a++    +lvlde t  ld+ +
  MMETSP1137-20121227|3850_1 295 TKDMSGGWRMRVALAQALFVKPMLLVLDEPTNHLDLGA 332
                 5679******************************9865 PP

  == domain 2    score: 21.6 bits;  conditional E-value: 2.4e-07
   TIGR01192 335 vefrdisfefanssqg..vrdvsfeakagqtvaivgptgagkttlinllqrvydpksgqi 392
                 + f+++sf ++  ++     ++ f +     +a+vgp gagk+tl+ l+ +  +p++g+i
  MMETSP1137-20121227|3850_1 465 LAFQNVSFAYSGKKEDylYTNLEFGIDCDSRIALVGPNGAGKSTLLKLMLQEIEPTEGEI 524
                 5799****99988876225799**************************99999*****98 PP

  == domain 3    score: 4.2 bits;  conditional E-value: 0.045
   TIGR01192 471 rlsggerqrlaiarailknapilvldeatsaldvet 506
                  ls g r rl      l+n  +l+lde t  ld++ 
  MMETSP1137-20121227|3850_1 595 TLSPGFRARLVFCLMSLRNPHLLLLDEPTNPLDMDM 630
                 6999*****************************986 PP

>> TIGR02323  CP_lyasePhnK: phosphonate C-P lyase system protein PhnK
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.0   6.8e-05    0.0045      24      54 ..     175     205 ..     155     224 .. 0.82
   2 !    8.8   0.0    0.0034      0.22     140     171 ..     296     328 ..     286     336 .. 0.86
   3 !   13.5   0.0   0.00012    0.0079       2      60 ..     463     526 ..     462     542 .. 0.82
   4 ?    1.8   0.0      0.46        30     139     197 ..     593     650 ..     574     670 .. 0.73

  Alignments for each domain:
  == domain 1    score: 14.3 bits;  conditional E-value: 6.8e-05
   TIGR02323  24 lypGevlgivGesGsGkstllkalaarllad 54 
                 l  G+  g++ + GsGkstllk++aar+++ 
  MMETSP1137-20121227|3850_1 175 LTYGHRYGLIAQNGSGKSTLLKCVAARMVPI 205
                 556888899******************9874 PP

  == domain 2    score: 8.8 bits;  conditional E-value: 0.0034
   TIGR02323 140 aafsGGmqqrlqiarnlvtrprlvfm.eptGGl 171
                 + +sGG + r+ +a++l  +p l+++ ept  l
  MMETSP1137-20121227|3850_1 296 KDMSGGWRMRVALAQALFVKPMLLVLdEPTNHL 328
                 679*******************98888**9866 PP

  == domain 3    score: 13.5 bits;  conditional E-value: 0.00012
   TIGR02323   2 pllevselsksygskkg....crvsf.lypGevlgivGesGsGkstllkalaarlladaGevty 60 
                 p+l  +++s  y++kk      +++f +     +++vG  G+Gkstllk + +++ +++Ge++ 
  MMETSP1137-20121227|3850_1 463 PVLAFQNVSFAYSGKKEdylyTNLEFgIDCDSRIALVGPNGAGKSTLLKLMLQEIEPTEGEIRR 526
                 6788888888888877533223578888888999**************************9975 PP

  == domain 4    score: 1.8 bits;  conditional E-value: 0.46
   TIGR02323 139 paafsGGmqqrlqiarnlvtrprlvfm.eptGGl.vsvqarllllrglvrelglaviivth 197
                  +++s G++ rl      + +p+l+++ ept  l + +   l l    ++ ++  v++v+h
  MMETSP1137-20121227|3850_1 593 IKTLSPGFRARLVFCLMSLRNPHLLLLdEPTNPLdMDMIDSLAL---AIKSFNGGVVLVSH 650
                 578999********99999*****9999***9885544444433...24555566666666 PP

>> TIGR01271  CFTR_protein: cystic fibrosis transmembrane conductor regulator (CFTR)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.5   0.0    0.0074      0.49    1231    1265 ..     164     198 ..     146     211 .. 0.87
   2 !   12.1   0.0   7.4e-05    0.0049     548     624 ..     297     379 ..     287     391 .. 0.69
   3 !   16.7   0.0   3.1e-06   0.00021     443     491 ..     484     532 ..     464     634 .. 0.71

  Alignments for each domain:
  == domain 1    score: 5.5 bits;  conditional E-value: 0.0074
   TIGR01271 1231 gravlqdlsfsveagqrvgllgrtgsgkstllsal 1265
                  g+ +++d ++ +  g r gl+ + gsgkstll ++
  MMETSP1137-20121227|3850_1  164 GQQLFEDQTLELTYGHRYGLIAQNGSGKSTLLKCV 198 
                  78889999999********************9865 PP

  == domain 2    score: 12.1 bits;  conditional E-value: 7.4e-05
   TIGR01271 548 tlsggqrarislaravykdadlylldspfsyldvvtekeifesclck.....ll.anktril..vtsklehlkkadkilllhegs 624
                  +sgg r r++la+a++    l +ld p ++ld+ +    +e  l k     ll +  +  l  v sk+ hl   dk l+l+ g+
  MMETSP1137-20121227|3850_1 297 DMSGGWRMRVALAQALFVKPMLLVLDEPTNHLDLGACV-WLEDYLSKwdsilLLtSHSADFLngVCSKIYHLT-VDKRLMLYGGN 379
                 68*******************************75432.2222222211111341334444455789999985.68888888776 PP

  == domain 3    score: 16.7 bits;  conditional E-value: 3.1e-06
   TIGR01271 443 knislklekgqllavagstgsgkssllmmilgelepsegkikhsgrisf 491
                  n+++ ++    +a+ g  g+gks+ll ++l e+ep+eg i+    + f
  MMETSP1137-20121227|3850_1 484 TNLEFGIDCDSRIALVGPNGAGKSTLLKLMLQEIEPTEGEIRRNPHLRF 532
                 5777778888888888888888888888888888888888888766665 PP

>> TIGR03415  ABC_choXWV_ATP: choline ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.6         7   4.7e+02     300     326 ..      60      85 ..      21     134 .. 0.52
   2 ?    5.8   0.0     0.019       1.2      42      71 ..     170     199 ..     164     206 .. 0.85
   3 !   16.1   0.0   1.4e-05   0.00091     156     197 ..     289     330 ..     265     353 .. 0.79
   4 ?   -0.4   0.0       1.4        96      54      69 ..     497     512 ..     487     524 .. 0.87
   5 ?    4.6   0.0     0.042       2.8     158     239 ..     589     666 ..     556     696 .. 0.78

  Alignments for each domain:
  == domain 1    score: -2.7 bits;  conditional E-value: 7
   TIGR03415 300 dtylekadkqveeaaaklalaataaeq 326
                 ++ le ++++++ ++a +++aa+a e 
  MMETSP1137-20121227|3850_1  60 KAALEAKKAEIAAKKAMKKVAAAA-EA 85 
                 222222223333333333332222.11 PP

  == domain 2    score: 5.8 bits;  conditional E-value: 0.019
   TIGR03415  42 dasldveeGeilvlmGlsGsGkssllravn 71 
                 d +l+++ G    l+   GsGks+ll++v 
  MMETSP1137-20121227|3850_1 170 DQTLELTYGHRYGLIAQNGSGKSTLLKCVA 199
                 66788888999999999***********96 PP

  == domain 3    score: 16.1 bits;  conditional E-value: 1.4e-05
   TIGR03415 156 eWadkkvgelsGGmqqrvGlarafateadillmdePfsaldP 197
                 +  +k ++++sGG + rv la+a+ ++  +l++deP   ld 
  MMETSP1137-20121227|3850_1 289 KMMQKATKDMSGGWRMRVALAQALFVKPMLLVLDEPTNHLDL 330
                 456778899****************************99996 PP

  == domain 4    score: -0.4 bits;  conditional E-value: 1.4
   TIGR03415  54 vlmGlsGsGkssllra 69 
                  l+G  G+Gks+ll+ 
  MMETSP1137-20121227|3850_1 497 ALVGPNGAGKSTLLKL 512
                 68999********985 PP

  == domain 5    score: 4.6 bits;  conditional E-value: 0.042
   TIGR03415 158 adkkvgelsGGmqqrvGlarafateadillmdePfsaldPliraklqdellelqkklkktivfvshdldealklGnriaime 239
                 +++ ++ ls G + r+ +      +  +ll+deP   ld      + d l    k ++  +v+vshd+    ++ ++i + e
  MMETSP1137-20121227|3850_1 589 QTNLIKTLSPGFRARLVFCLMSLRNPHLLLLDEPTNPLDM----DMIDSLALAIKSFNGGVVLVSHDFRLLEQVAENIWVCE 666
                 5566778899999888888887888899******999994....6678887778899**********876666666666655 PP

>> TIGR01257  rim_protein: rim ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.8   0.0   0.00023     0.015    2046    2140 ..     272     364 ..     246     377 .. 0.75
   2 !    5.3   0.0    0.0055      0.36    2050    2134 ..     572     656 ..     463     671 .. 0.59

  Alignments for each domain:
  == domain 1    score: 9.8 bits;  conditional E-value: 0.00023
   TIGR01257 2046 eiekvanwsikslglslya.drlagtysggnkrklstaialigcpplvlldepttgmdpqarrmlwntivsiiregravvltshsmeecealctrl 2140
                    ek a   +  lg+s    ++ +   sgg + +++ a al   p l++ldept  +d  a   l + +    + +  ++ltshs +  + +c+++
  MMETSP1137-20121227|3850_1  272 TFEKRAGELLFGLGFSQKMmQKATKDMSGGWRMRVALAQALFVKPMLLVLDEPTNHLDLGACVWLEDYL---SKWDSILLLTSHSADFLNGVCSKI 364 
                  556666666666676655413444568999999999999999999999999999999999877666543...466788899999999999999876 PP

  == domain 2    score: 5.3 bits;  conditional E-value: 0.0055
   TIGR01257 2050 vanwsikslglslyadr...lagtysggnkrklstaialigcpplvlldepttgmdpqarrmlwntivsiiregravvltshsmeece 2134
                  v +w  k   + +  d+   l  t s g + +l  ++  +  p l+lldept  +d +   m+    ++i   +  vvl sh +   e
  MMETSP1137-20121227|3850_1  572 VPEWRAKLGIFGVTGDKqtnLIKTLSPGFRARLVFCLMSLRNPHLLLLDEPTNPLDMD---MIDSLALAIKSFNGGVVLVSHDFRLLE 656 
                  5666655433344444322278899999999999999999999999999999888765...777777777778889999999876655 PP

>> TIGR00957  MRP_assoc_pro: multi drug resistance-associated protein (MRP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.6   0.0    0.0018      0.12    1419    1455 ..     295     331 ..     287     372 .. 0.87
   2 !   10.8   0.0   0.00018     0.012     639     695 ..     467     524 ..     421     531 .. 0.70
   3 ?   -2.3   0.0       1.7   1.1e+02    1422    1465 ..     596     639 ..     593     655 .. 0.73

  Alignments for each domain:
  == domain 1    score: 7.6 bits;  conditional E-value: 0.0018
   TIGR00957 1419 genlsvgqrqlvclarallrktkilvldeataavdle 1455
                   +++s g r  v la+al+ k  +lvlde t  +dl 
  MMETSP1137-20121227|3850_1  295 TKDMSGGWRMRVALAQALFVKPMLLVLDEPTNHLDLG 331 
                  56789999999*******************9999986 PP

  == domain 2    score: 10.8 bits;  conditional E-value: 0.00018
   TIGR00957 639 vknatftwardepp.tlngltlsipegalvavvgqvgcgkssllsallaemdkvegkv 695
                  +n +f+++ ++      +l++ i   + +a+vg+ g gks+ll  +l e++  eg++
  MMETSP1137-20121227|3850_1 467 FQNVSFAYSGKKEDyLYTNLEFGIDCDSRIALVGPNGAGKSTLLKLMLQEIEPTEGEI 524
                 4455555553333303345667777777777777777777777777777777777765 PP

  == domain 3    score: -2.3 bits;  conditional E-value: 1.7
   TIGR00957 1422 lsvgqrqlvclarallrktkilvldeataavdletdnliqstir 1465
                  ls g r  + ++   lr+ ++l+lde t  +d++  + +  +i+
  MMETSP1137-20121227|3850_1  596 LSPGFRARLVFCLMSLRNPHLLLLDEPTNPLDMDMIDSLALAIK 639 
                  6667776666666789****************998776666665 PP

>> TIGR01194  cyc_pep_trnsptr: cyclic peptide transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.0      0.72        47     372     389 ..     183     200 ..     169     212 .. 0.80
   2 ?    0.5   0.0      0.56        37     466     496 ..     294     324 ..     270     331 .. 0.85
   3 !   13.4   0.0   6.9e-05    0.0046     359     399 ..     485     525 ..     464     653 .. 0.87

  Alignments for each domain:
  == domain 1    score: 0.1 bits;  conditional E-value: 0.72
   TIGR01194 372 ivGenGcGkstliklllG 389
                 ++ +nG Gkstl+k +  
  MMETSP1137-20121227|3850_1 183 LIAQNGSGKSTLLKCVAA 200
                 7889**********8765 PP

  == domain 2    score: 0.5 bits;  conditional E-value: 0.56
   TIGR01194 466 tttdlstGqrkrlalvnayleerpvllldew 496
                 +t d+s G r r+al  a + +  +l+lde 
  MMETSP1137-20121227|3850_1 294 ATKDMSGGWRMRVALAQALFVKPMLLVLDEP 324
                 589***************9999889999996 PP

  == domain 3    score: 13.4 bits;  conditional E-value: 6.9e-05
   TIGR01194 359 pidlriasGelvyivGenGcGkstliklllGlyipqeGell 399
                  +++ i     + +vG nG Gkstl+kl+l    p eGe+ 
  MMETSP1137-20121227|3850_1 485 NLEFGIDCDSRIALVGPNGAGKSTLLKLMLQEIEPTEGEIR 525
                 56666777777889*************************96 PP

>> TIGR00956  3a01205: pleiotropic drug resistance family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   1.3      0.18        12     756     813 ..     131     202 ..      42     205 .. 0.55
   2 !    5.4   0.0    0.0091      0.61     210     243 ..     298     331 ..     279     380 .. 0.74
   3 ?    4.0   0.0     0.024       1.6     757     812 ..     462     516 ..     378     539 .. 0.63
   4 ?   -1.8   0.0       1.3        87     915     935 ..     609     628 ..     591     640 .. 0.72

  Alignments for each domain:
  == domain 1    score: 1.1 bits;  conditional E-value: 0.18
   TIGR00956 756 g.............eeifewrdltye.vkikkekrvlLdevdGwvkPGkltALmGasGAGkttLlnvLaeRv 813
                 +                +  rd+  e   i+   ++l ++ +  +  G+   L+ + G Gk tLl ++a R+
  MMETSP1137-20121227|3850_1 131 EegthklavctgvlASRKDSRDVKIEsFSISLFGQQLFEDQTLELTYGHRYGLIAQNGSGKSTLLKCVAARM 202
                 033334444433332223333333221233444456666666667777888889999999999999999885 PP

  == domain 2    score: 5.4 bits;  conditional E-value: 0.0091
   TIGR00956 210 vsGGerkRvsiaevlvakakiqcwDnatrGLDsa 243
                 +sGG r Rv++a +l +k++++++D+ t  LD  
  MMETSP1137-20121227|3850_1 298 MSGGWRMRVALAQALFVKPMLLVLDEPTNHLDLG 331
                 6777777777777777777777777777777754 PP

  == domain 3    score: 4.0 bits;  conditional E-value: 0.024
   TIGR00956 757 eeifewrdltyevkikkekrvlLdevdGwvkPGkltALmGasGAGkttLlnvLaeR 812
                   +  ++++++    kke+  l  +++  +   +  AL+G  GAGk tLl  + + 
  MMETSP1137-20121227|3850_1 462 PPVLAFQNVSFAYSGKKEDY-LYTNLEFGIDCDSRIALVGPNGAGKSTLLKLMLQE 516
                 55677777777777777764.5566666666677789************9987654 PP

  == domain 4    score: -1.8 bits;  conditional E-value: 1.3
   TIGR00956 915 eLvAkPklllFlDePtsGLDs 935
                     +P  ll lDePt  LD 
  MMETSP1137-20121227|3850_1 609 MSLRNP-HLLLLDEPTNPLDM 628
                 445577.67789999999996 PP

>> TIGR02546  III_secr_ATP: type III secretion apparatus H+-transporting two-sector ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.5   0.0   0.00057     0.038     138     167 ..     170     199 ..     165     203 .. 0.88
   2 ?    1.5   0.0       0.3        20     147     169 ..     494     516 ..     488     521 .. 0.85

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 0.00057
   TIGR02546 138 DglltvgeGqRiGifaeaGvGkstLlsmia 167
                 D  l ++ G R G+ a+ G+GkstLl+ +a
  MMETSP1137-20121227|3850_1 170 DQTLELTYGHRYGLIAQNGSGKSTLLKCVA 199
                 56678899******************9887 PP

  == domain 2    score: 1.5 bits;  conditional E-value: 0.3
   TIGR02546 147 qRiGifaeaGvGkstLlsmiarg 169
                  Ri + +  G+GkstLl+ + ++
  MMETSP1137-20121227|3850_1 494 SRIALVGPNGAGKSTLLKLMLQE 516
                 5999999**********988765 PP

>> TIGR00231  small_GTP: small GTP-binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.0      0.22        15       7      21 ..     182     196 ..     176     205 .. 0.85
   2 !    9.4   0.0    0.0028      0.18       4      25 ..     494     515 ..     491     523 .. 0.86

  Alignments for each domain:
  == domain 1    score: 3.2 bits;  conditional E-value: 0.22
   TIGR00231   7 vivGhvdvGKstLln 21 
                 +++++ ++GKstLl+
  MMETSP1137-20121227|3850_1 182 GLIAQNGSGKSTLLK 196
                 899**********97 PP

  == domain 2    score: 9.4 bits;  conditional E-value: 0.0028
   TIGR00231   4 ikivivGhvdvGKstLlnsllk 25 
                  +i++vG  ++GKstLl+ +l+
  MMETSP1137-20121227|3850_1 494 SRIALVGPNGAGKSTLLKLMLQ 515
                 589**************98876 PP

>> TIGR03496  FliI_clade1: flagellar protein export ATPase FliI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.2   0.0    0.0016      0.11     130     158 ..     171     199 ..     164     204 .. 0.88
   2 ?    2.4   0.0      0.18        12     139     160 ..     495     516 ..     488     520 .. 0.88

  Alignments for each domain:
  == domain 1    score: 9.2 bits;  conditional E-value: 0.0016
   TIGR03496 130 alltvgkGqrlglfagsGvGKsvLlgmla 158
                 + l ++ G r gl+a  G GKs+Ll  +a
  MMETSP1137-20121227|3850_1 171 QTLELTYGHRYGLIAQNGSGKSTLLKCVA 199
                 6688999******************9887 PP

  == domain 2    score: 2.4 bits;  conditional E-value: 0.18
   TIGR03496 139 rlglfagsGvGKsvLlgmlara 160
                 r++l+   G GKs+Ll  + ++
  MMETSP1137-20121227|3850_1 495 RIALVGPNGAGKSTLLKLMLQE 516
                 999**************99775 PP

>> TIGR03015  pepcterm_ATPase: putative secretion ATPase, PEP-CTERM locus subfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.3       2.3   1.5e+02      52     141 ..      42     131 ..      32     138 .. 0.58
   2 !   11.3   0.0   0.00054     0.036      18      69 ..     469     519 ..     461     525 .. 0.86

  Alignments for each domain:
  == domain 1    score: -0.6 bits;  conditional E-value: 2.3
   TIGR03015  52 vGaGkttlvrnllkkleaekvvlaklvntkvdaedllrmvaa..dfGletegrdkvall.releeflieqaaegkrallvvdeaqnlseelle 141
                 +  G   l  + l+k+e++  + ak  ++++ a+++++ vaa  + G ++++++ +a++  e e+ l++++++gk+   v + a +l++ ++e
  MMETSP1137-20121227|3850_1  42 INKGEEQLFEKKLSKEEKKAALEAK--KAEIAAKKAMKKVAAaaEAGAPMDEEEVAAMVaAEAEKKLAKKEKKGKKEE-VAEAAEDLDKLTME 131
                 5555555555555555533333333..555666666666654114577777777666652456777777777777653.44555666665555 PP

  == domain 2    score: 11.3 bits;  conditional E-value: 0.00054
   TIGR03015  18 dPeflygskahkralayleyGlsereGfilitGevGaGkttlvrnllkklea 69 
                 + +f y+ k+     + le+G+  +   i + G  GaGk tl++ +l++ e+
  MMETSP1137-20121227|3850_1 469 NVSFAYSGKKEDYLYTNLEFGIDCD-SRIALVGPNGAGKSTLLKLMLQEIEP 519
                 568999999999999*******765.5688889**************99875 PP

>> TIGR02322  phosphon_PhnN: phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.0       1.2        82       7      26 ..     184     203 ..     179     225 .. 0.85
   2 ?    9.1   0.0    0.0031       0.2       4      25 ..     496     517 ..     494     526 .. 0.84

  Alignments for each domain:
  == domain 1    score: 0.6 bits;  conditional E-value: 1.2
   TIGR02322   7 vGpsGaGKDtlldlararla 26 
                 +   G+GK tll+ ++ar+ 
  MMETSP1137-20121227|3850_1 184 IAQNGSGKSTLLKCVAARMV 203
                 6678*********9988875 PP

  == domain 2    score: 9.1 bits;  conditional E-value: 0.0031
   TIGR02322   4 ilvvGpsGaGKDtlldlararl 25 
                 i++vGp GaGK tll+l  +++
  MMETSP1137-20121227|3850_1 496 IALVGPNGAGKSTLLKLMLQEI 517
                 789************9876665 PP

>> TIGR00929  VirB4_CagE: type IV secretion/conjugal transfer ATPase, VirB4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   2.7       6.5   4.3e+02     283     347 ..      50     114 ..      39     124 .. 0.87
   2 ?    4.2   0.0     0.032       2.1     444     473 ..     185     215 ..     168     219 .. 0.79
   3 ?    5.8   0.0     0.011      0.72     441     460 ..     497     516 ..     494     522 .. 0.87

  Alignments for each domain:
  == domain 1    score: -3.4 bits;  conditional E-value: 6.5
   TIGR00929 283 akskLkrkrkrlissadkaksqlaelseaedeltsgdfvlgehhlslvvlaedkekldkalrevk 347
                  ++kL++++k+ +  a ka +  ++  +  ++++   + + e ++ ++v ae ++kl+k+ ++ k
  MMETSP1137-20121227|3850_1  50 FEKKLSKEEKKAALEAKKAEIAAKKAMKKVAAAAEAGAPMDEEEVAAMVAAEAEKKLAKKEKKGK 114
                 57899999999999999999999999999999999999********************9998755 PP

  == domain 2    score: 4.2 bits;  conditional E-value: 0.032
   TIGR00929 444 GptgsGKTvllnfllaqlqkykp.ltiiafD 473
                  ++gsGK++ll+ ++a +    + ++i ++D
  MMETSP1137-20121227|3850_1 185 AQNGSGKSTLLKCVAARMVPIPEfIDIWFLD 215
                 589*************997555455555555 PP

  == domain 3    score: 5.8 bits;  conditional E-value: 0.011
   TIGR00929 441 lIfGptgsGKTvllnfllaq 460
                 +++Gp+g+GK++ll+++l +
  MMETSP1137-20121227|3850_1 497 ALVGPNGAGKSTLLKLMLQE 516
                 579************99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (702 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       447  (0.108971); expected 82.0 (0.02)
Passed bias filter:                      216  (0.0526572); expected 82.0 (0.02)
Passed Vit filter:                        97  (0.023647); expected 4.1 (0.001)
Passed Fwd filter:                        63  (0.0153584); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              62  [number of targets reported over threshold]
# CPU time: 1.71u 0.21s 00:00:01.92 Elapsed: 00:00:02.18
# Mc/sec: 425.03
//
Query:       MMETSP1137-20121227|3851_1  [L=175]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0013   16.8   0.0     0.0019   16.2   0.0    1.2  1  TIGR01543 proheadase_HK97: phage prohead protease, HK97 family


Domain annotation for each model (and alignments):
>> TIGR01543  proheadase_HK97: phage prohead protease, HK97 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0   4.7e-07    0.0019      20      54 ..      42      76 ..      31      95 .. 0.83

  Alignments for each domain:
  == domain 1    score: 16.2 bits;  conditional E-value: 4.7e-07
   TIGR01543 20 evvlpGAFketLaeredkvrlLyeHdtalplgrav 54
                 ++  G Fk+++++  +k++ ++ H+ +++lg+ +
  MMETSP1137-20121227|3851_1 42 SIFETGTFKRWIRDDMAKINTFWTHKQEELLGQGE 76
                5799***************************9866 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (175 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       110  (0.0268162); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.19u 0.10s 00:00:00.29 Elapsed: 00:00:00.37
# Mc/sec: 624.27
//
Query:       MMETSP1137-20121227|3852_1  [L=145]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (145 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        88  (0.0214529); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.14s 00:00:00.30 Elapsed: 00:00:00.38
# Mc/sec: 503.64
//
Query:       MMETSP1137-20121227|3853_1  [L=268]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (268 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       189  (0.0460751); expected 82.0 (0.02)
Passed bias filter:                      135  (0.0329108); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.17s 00:00:00.40 Elapsed: 00:00:00.46
# Mc/sec: 768.98
//
Query:       MMETSP1137-20121227|3855_1  [L=254]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (254 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        61  (0.0148708); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.12s 00:00:00.32 Elapsed: 00:00:00.53
# Mc/sec: 632.55
//
Query:       MMETSP1137-20121227|3856_1  [L=470]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (470 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       124  (0.0302292); expected 82.0 (0.02)
Passed bias filter:                       96  (0.0234032); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.15s 00:00:00.49 Elapsed: 00:00:00.61
# Mc/sec: 1016.97
//
Query:       MMETSP1137-20121227|3857_1  [L=191]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (191 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       100  (0.0243784); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.13s 00:00:00.31 Elapsed: 00:00:00.38
# Mc/sec: 663.42
//
Query:       MMETSP1137-20121227|3858_1  [L=453]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (453 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       106  (0.0258411); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.17s 00:00:00.49 Elapsed: 00:00:00.46
# Mc/sec: 1299.81
//
Query:       MMETSP1137-20121227|3859_1  [L=83]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (83 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        68  (0.0165773); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.14s 00:00:00.28 Elapsed: 00:00:00.36
# Mc/sec: 304.31
//
Query:       MMETSP1137-20121227|3860_1  [L=98]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (98 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        55  (0.0134081); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.12s 00:00:00.25 Elapsed: 00:00:00.26
# Mc/sec: 497.50
//
Query:       MMETSP1137-20121227|3861_1  [L=214]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (214 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        72  (0.0175524); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.16s 00:00:00.35 Elapsed: 00:00:00.30
# Mc/sec: 941.52
//
Query:       MMETSP1137-20121227|3862_1  [L=205]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (205 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       201  (0.0490005); expected 82.0 (0.02)
Passed bias filter:                      145  (0.0353486); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.12s 00:00:00.32 Elapsed: 00:00:00.40
# Mc/sec: 676.44
//
Query:       MMETSP1137-20121227|3863_1  [L=288]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (288 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       136  (0.0331546); expected 82.0 (0.02)
Passed bias filter:                      120  (0.029254); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.13s 00:00:00.38 Elapsed: 00:00:00.37
# Mc/sec: 1027.37
//
Query:       MMETSP1137-20121227|3864_1  [L=198]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.04   11.7   2.3       0.07   11.0   1.6    1.3  1  TIGR03741 PRTRC_E: PRTRC system protein E


Domain annotation for each model (and alignments):
>> TIGR03741  PRTRC_E: PRTRC system protein E
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   1.6   1.7e-05      0.07      62     105 ..     152     194 ..     144     195 .. 0.86

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 1.7e-05
   TIGR03741  62 ealkqyveareslaeqvaatravleaaaakeaeaakakkaakkk 105
                 +++++ +e+r+ la+q+aa +++    ++++  aa+a+k+ kkk
  MMETSP1137-20121227|3864_1 152 QQMHKQAEKRRQLADQAAAEEEITX-NKKDSDTAASASKKGKKK 194
                 7888999**************9999.788888888999888887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (198 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       168  (0.0409556); expected 82.0 (0.02)
Passed bias filter:                      124  (0.0302292); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.20u 0.13s 00:00:00.33 Elapsed: 00:00:00.59
# Mc/sec: 442.95
//
Query:       MMETSP1137-20121227|3865_1  [L=181]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (181 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        98  (0.0238908); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.17s 00:00:00.37 Elapsed: 00:00:00.45
# Mc/sec: 530.89
//
Query:       MMETSP1137-20121227|3866_1  [L=404]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0083   13.3   0.0      0.014   12.6   0.0    1.3  1  TIGR01983 UbiG: 3-demethylubiquinone-9 3-O-methyltransferase
     0.0088   13.3   0.0      0.021   12.0   0.0    1.5  1  TIGR02021 BchM-ChlM: magnesium protoporphyrin O-methyltransferase


Domain annotation for each model (and alignments):
>> TIGR01983  UbiG: 3-demethylubiquinone-9 3-O-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.6   0.0   6.6e-06     0.014      35     147 ..     166     284 ..     140     293 .. 0.71

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 6.6e-06
   TIGR01983  35 ekikkklkkne...kkleglkvlDvGcGgGllseslarlgae.vtgiDlseel.ievAklhakkdplk..kieyelksve...elaeee.kesfDvvlamEvlEHvadleeilkecaellkpgg 147
                 +  ++     e   +++ g +v+++G+G Gl    la++ga  v   D+ +++ + + ++ a++  l   k + +++++e    l  +  ++s+D+v+a +v+   +d+ ++ +++ +llk+gg
  MMETSP1137-20121227|3866_1 166 KAQQE-----EvlsRHIVGRNVIELGAGLGLTGIFLAQNGARrVCLTDQPQQIpLLTRNINANRCALSraKCSVRAAALEwggALPPSIaAQSWDLVVATDVVYDADDMPALAESIGRLLKSGG 284
                 33333.....13338899***********************9766666655541222233333333335555566666662222322223789***************************9998 PP

>> TIGR02021  BchM-ChlM: magnesium protoporphyrin O-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.0   0.0     1e-05     0.021      48     145 ..     173     278 ..     162     283 .. 0.72

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 1e-05
   TIGR02021  48 lpkdslkGkkvlDAGCGtGllsielAkrGai.vkavDiseklvelarkraekedeaenveFev..ndle.......sle.gkfDavvalDvlihYpaediakalerlas 145
                 l+   + G +v++ G G Gl  i lA++Ga+ v   D  +++  l+r+ + ++    + +  v    le       s+  + +D vva Dv+  Y a+d++++ e ++ 
  MMETSP1137-20121227|3866_1 173 LSRH-IVGRNVIELGAGLGLTGIFLAQNGARrVCLTDQPQQIPLLTRNINANRCALSRAKCSVraAALEwggalppSIAaQSWDLVVATDVV--YDADDMPALAESIGR 278
                 4444.89**********************963778899999888888877777766666555511233322222334445889999999987..888888888777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (404 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        93  (0.0226719); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.32u 0.15s 00:00:00.47 Elapsed: 00:00:00.42
# Mc/sec: 1269.61
//
Query:       MMETSP1137-20121227|3867_1  [L=164]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (164 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       128  (0.0312043); expected 82.0 (0.02)
Passed bias filter:                      114  (0.0277913); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.14s 00:00:00.31 Elapsed: 00:00:00.31
# Mc/sec: 698.26
//
Query:       MMETSP1137-20121227|3868_1  [L=110]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (110 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        47  (0.0114578); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.14s 00:00:00.28 Elapsed: 00:00:00.28
# Mc/sec: 518.53
//
Query:       MMETSP1137-20121227|3869_1  [L=99]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (99 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        90  (0.0219405); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.41
# Mc/sec: 318.71
//
Query:       MMETSP1137-20121227|3870_1  [L=129]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (129 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       126  (0.0307167); expected 82.0 (0.02)
Passed bias filter:                      107  (0.0260848); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.20s 00:00:00.34 Elapsed: 00:00:00.41
# Mc/sec: 415.28
//
Query:       MMETSP1137-20121227|3872_1  [L=325]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.2e-43  144.5   6.0    1.7e-41  140.3   4.2    2.0  1  TIGR01830 3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase
    2.3e-41  139.6   6.4    3.1e-41  139.1   4.4    1.2  1  TIGR01963 PHB_DH: 3-hydroxybutyrate dehydrogenase
    2.3e-39  133.3  10.7    9.7e-39  131.2   7.4    1.8  1  TIGR03971 SDR_subfam_1: oxidoreductase, SDR family
    9.8e-39  131.1   6.6    1.2e-38  130.8   4.6    1.1  1  TIGR02415 23BDH: acetoin reductases
    1.4e-35  120.8   7.3    1.4e-35  120.8   5.0    1.6  1  TIGR01832 kduD: 2-deoxy-D-gluconate 3-dehydrogenase
    1.5e-33  113.9   7.8    1.8e-33  113.7   5.4    1.0  1  TIGR02632 RhaD_aldol-ADH: rhamnulose-1-phosphate aldolase/alcohol dehydrogenase
      7e-32  108.8   6.1    8.5e-31  105.3   4.2    2.0  1  TIGR01829 AcAcCoA_reduct: acetoacetyl-CoA reductase
    1.3e-30  104.4  11.2    1.9e-30  103.9   7.7    1.2  1  TIGR03206 benzo_BadH: 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase
      3e-22   77.0   8.5    1.1e-20   71.9   5.9    2.1  1  TIGR01831 fabG_rel: putative 3-oxoacyl-(acyl-carrier-protein) reductase
    1.1e-21   75.1   5.5    1.4e-21   74.7   3.8    1.2  1  TIGR03325 BphB_TodD: cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase
    4.4e-12   43.5  11.0      2e-09   34.7   7.6    3.0  1  TIGR02685 pter_reduc_Leis: pteridine reductase
    2.3e-05   21.8   0.2    3.2e-05   21.3   0.2    1.2  1  TIGR01500 sepiapter_red: sepiapterin reductase
    0.00099   16.1   0.0     0.0014   15.6   0.0    1.3  1  TIGR02622 CDP_4_6_dhtase: CDP-glucose 4,6-dehydratase


Domain annotation for each model (and alignments):
>> TIGR01830  3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  140.3   4.2   5.3e-44   1.7e-41       2     237 ..      70     323 ..      69     325 .] 0.85

  Alignments for each domain:
  == domain 1    score: 140.3 bits;  conditional E-value: 5.3e-44
   TIGR01830   2 lvtGasrgiGkaiakklakegakvviterskeekaeelaeelk..eagvkaaavkldvsdeeevkelveeveeelgeidilvnnAGitrD.klllrmkeedwdevikvnLkgvfnvtkavlkkmikkrsGriinissvvgllGnagqanYaasKaGligltkslakElasrnitvnavaPGfi................etdmteklsekvkkkileqiplkrlgkpeevaaavafLasdeasyitGqvlkvdGG 237
                 l+ Ga+   G++ ++ +a++ga+++  ++ +++ ++++ +++k  +  ++++++++d+ ++++v+++v++ ++++g+id+  nnAG+  + k  l+   +d++ev+++n+ g f + +av+ +m     G+i+n +sv++l   +  + Y+asKa + g+t + ak+la ++i+vnav+P +i                 ++  ++  + v ++ ++++plkrlg+++ev a+vafL s+easy tG+ l v+GG
  MMETSP1137-20121227|3872_1  70 LISGAGGNFGREGSLYFAAAGANIIAVDAAEAA-LKQTIDAVKlaHPNARCIGLVCDIRNAASVSAAVQAGIDAFGKIDLCWNNAGVQGEmKSTLEYPLDDFQEVMDINVVGSFIMLQAVSSSMASTGGGAIVNTASVAALQCTPTMVAYVASKAAVLGMTVAAAKDLAPHGIRVNAVSPALIgpgfmwerqnalhaasGSPYFANDADAVAEAKVSAVPLKRLGTTAEVVATVAFLLSEEASYTTGANLVVSGG 323
                 89*************************886655.5555555441156788999**********************************976367899*********************************************************************************9976662111133211111111122223335678889999*************************************9 PP

>> TIGR01963  PHB_DH: 3-hydroxybutyrate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  139.1   4.4   9.9e-44   3.1e-41       2     251 ..      67     323 ..      66     325 .] 0.90

  Alignments for each domain:
  == domain 1    score: 139.1 bits;  conditional E-value: 9.9e-44
   TIGR01963   2 kvalvtGaasGiglaiakelaaaGakvvvndleeeaaeaaak..eleeaggevlalkadvtkeeeiadlieavaaefgsldiLvnnAGiq.hvapieefptekfekiiavnltsafhtiraalpimkkqgwGriiniasvhglvasafKsaYvaaKHglvGltKvlAlEvAetgitanaicPgyvrtpLv.ekqiadqaktrg...i.seeqvvkevllkkqptkrfvtveevaelalflasdaaaqitGqalsldgG 251
                 k++l+ Ga++  g++ +  +aaaGa+++ +d+ e+a++++    +l++  ++++ l+ d+ ++++++  ++a  ++fg++d+  nnAG+q  ++   e+p ++f++++++n+ ++f++ +a+   m  +g G i+n asv +l+  ++  aYva+K +++G+t ++A++ A +gi++na+ P+ +    + e+q a +a   g     +  ++v e  ++ +p kr+ t+ ev ++++fl s++a   tG++l+++gG
  MMETSP1137-20121227|3872_1  67 KTILISGAGGNFGREGSLYFAAAGANIIAVDAAEAALKQTIDavKLAHPNARCIGLVCDIRNAASVSAAVQAGIDAFGKIDLCWNNAGVQgEMKSTLEYPLDDFQEVMDINVVGSFIMLQAVSSSMASTGGGAIVNTASVAALQCTPTMVAYVASKAAVLGMTVAAAKDLAPHGIRVNAVSPALIGPGFMwERQNALHAA-SGspyFaNDADAVAEAKVSAVPLKRLGTTAEVVATVAFLLSEEASYTTGANLVVSGG 323
                 9********************************99888875511556778999*************************************5588899***************************************************************************************9877652666554443.331223134578899999**************************************9 PP

>> TIGR03971  SDR_subfam_1: oxidoreductase, SDR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  131.2   7.4   3.1e-41   9.7e-39       2     264 ..      65     324 ..      64     325 .] 0.88

  Alignments for each domain:
  == domain 1    score: 131.2 bits;  conditional E-value: 3.1e-41
   TIGR03971   2 eGkvalitGaarGqGraeavrlaaeGadiiaidlceplsdvvtypaatredldetaklveal..GrkvlarkadvrkleelravveegveefGrldvvvanaGvls.ygrafelseeqWdtvldvnlkGvWktvkavvPalierknGGsiiivssvaglkalpglahyaaakhGlvgltktlanelaeygirvnsihPtsvdta.miepeamrelfa.......kreeaaraflpalpvsglvepedvadvvawlasdesryitGaqlavdaGa 264
                 +Gk  li Ga    Gr  ++ +aa Ga+iia+d +e               l++t+ +v+ +    + +  ++d+r+ + + a+v+ g++ fG++d+  +naGv + + ++ e   +++++v+d+n+ G +  ++av   +   + GG+i+ ++sva+l+++p+ + y a+k  ++g+t + a++la++girvn+++P  +    m e + + ++ +       + +++a+a ++a+p++ l ++ +v + va+l s+e+ y tGa+l v  Ga
  MMETSP1137-20121227|3872_1  65 DGKTILISGAGGNFGREGSLYFAAAGANIIAVDAAEAA-------------LKQTIDAVKLAhpNARCIGLVCDIRNAASVSAAVQAGIDAFGKIDLCWNNAGVQGeMKSTLEYPLDDFQEVMDINVVGSFIMLQAVSSSMASTG-GGAIVNTASVAALQCTPTMVAYVASKAAVLGMTVAAAKDLAPHGIRVNAVSPALIGPGfMWERQNALHAASgspyfanDADAVAEAKVSAVPLKRLGTTAEVVATVAFLLSEEASYTTGANLVVSGGA 324
                 8********************************77654.............55555555433115678899*********************************97367789****************************99998.*******************************************************87625555544444446777776777888888*************************************9997 PP

>> TIGR02415  23BDH: acetoin reductases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  130.8   4.6   3.8e-41   1.2e-38       1     250 [.      67     323 ..      67     325 .] 0.88

  Alignments for each domain:
  == domain 1    score: 130.8 bits;  conditional E-value: 3.8e-41
   TIGR02415   1 kvalvtGaaqGiGkaiaerLakdGfavavadlneetaketakelkekgtka..vavkldvsdkseveeaveqaveklGeldvlvnnaGva.lvtpileiteeeleklynvnvkgvlfGiqaaaekfkklkhkGkiinaasiagvegspelsaysstkfavrgltqtaakeLakkgitvnayaPGivkte.mreeideklaelag....keigekleefsseiklGresePedvaelvsflasedsdyitGqsilvdGG 250
                 k+ l+ Ga+   G++ +  +a+ G +++ +d  e+++k+t+  +k +  +a  + ++ d+++ ++v +av+  ++ +G++d+  nnaGv+  +++ le   ++++++ ++nv g +  +qa ++ +  +  +G i+n as+a+ + +p++ ay ++k av g+t +aak+La++gi vna +P ++    m+e+ ++  a         + +   e+  s++ l r  +  +v + v+fl se++ y tG  ++v GG
  MMETSP1137-20121227|3872_1  67 KTILISGAGGNFGREGSLYFAAAGANIIAVDAAEAALKQTIDAVKLAHPNArcIGLVCDIRNAASVSAAVQAGIDAFGKIDLCWNNAGVQgEMKSTLEYPLDDFQEVMDINVVGSFIMLQAVSSSMAST-GGGAIVNTASVAALQCTPTMVAYVASKAAVLGMTVAAAKDLAPHGIRVNAVSPALIGPGfMWERQNALHAASGSpyfaNDADAVAEAKVSAVPLKRLGTTAEVVATVAFLLSEEASYTTGANLVVSGG 323
                 7889************************************998776665551166788*******************************6479****************************99998766.589***************************************************9987637777665555544422223344456677899************************************9 PP

>> TIGR01832  kduD: 2-deoxy-D-gluconate 3-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  120.8   5.0   4.3e-38   1.4e-35       4     244 ..      65     323 ..      63     325 .] 0.85

  Alignments for each domain:
  == domain 1    score: 120.8 bits;  conditional E-value: 4.3e-38
   TIGR01832   4 eGkvalvtGantGlGqgiavglaeaGadivgvg..iselsetqekveal..GrkflslkadladeeaakalvdeaveeagkidilvnnaGiirr.edavefsekdwddvlnvnlkavfllsqavakkllkqGrkgkiiniasllsfqGGirvpsytasksavaGltkllanewakkginvna.....iaPGyl.etnntea.......lradek.rnaaileriPagrwGepedlagaavflassasdyvnGailavdGG 244
                 +Gk++l++Ga   +G+  ++ +a+aGa+i++v+   ++l++t+++v+     ++   l  d+++ ++++a v+  ++++gkid   nnaG+    + ++e++  d+++v+++n+   f++ qav+  +  +G  g i+n as+ ++q    + +y ask av+G+t + a+++a +gi+vna     i PG++ e +n+ +       + +d++  ++a ++ +P  r G+++++  ++ fl s+ ++y +Ga l v GG
  MMETSP1137-20121227|3872_1  65 DGKTILISGAGGNFGREGSLYFAAAGANIIAVDaaEAALKQTIDAVKLAhpNARCIGLVCDIRNAASVSAAVQAGIDAFGKIDLCWNNAGVQGEmKSTLEYPLDDFQEVMDINVVGSFIMLQAVSSSMASTG-GGAIVNTASVAALQCTPTMVAYVASKAAVLGMTVAAAKDLAPHGIRVNAvspalIGPGFMwERQNALHaasgspyFANDADaVAEAKVSAVPLKRLGTTAEVVATVAFLLSEEASYTTGANLVVSGG 323
                 8******************************98334567899999875511567788999*******************************86516679*********************************.9************************************************33333346888434444321111222334544145667899************************************9 PP

>> TIGR02632  RhaD_aldol-ADH: rhamnulose-1-phosphate aldolase/alcohol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  113.7   5.4   5.7e-36   1.8e-33     406     670 ..      58     324 ..      48     325 .] 0.89

  Alignments for each domain:
  == domain 1    score: 113.7 bits;  conditional E-value: 5.7e-36
   TIGR02632 406 mPkekelarrvalvtGgasGiGrevarrlvdeGahvvladldaeaaeavaaelvdkfGadkavalkldvtdeeavkaafaevalayGGvdivvnnaGiavskp.leeteleeWdlnldilatGyflvareaarllrkqglggnlvfiasknavvakknalaysaakaaeahlvrllaielaelgirvntvaPdavlrGsgifagewrekraaaygie.....adkleefykkrsllkrevlpediaeavfllasdklekttGliitvdaGv 670
                  P+++ + ++ +l+ G+++  Gre ++ +++ Ga ++ +d  ++a++++ ++++  + + +++ l+ d+ +  +v aa+++   a+G +d+  nnaG+    + + e  l++++  +di++ G+f++ +     + +   gg +v +as+ a+  ++  +ay a+kaa   +    a +la++girvn+v P+ +  G  +++++   + a+ +  +     ad ++e       lkr  +++++  +v +l+s++ + ttG  + v +G 
  MMETSP1137-20121227|3872_1  58 DPPPRRFDGKTILISGAGGNFGREGSLYFAAAGANIIAVDAAEAALKQTIDAVKLAHPNARCIGLVCDIRNAASVSAAVQAGIDAFGKIDLCWNNAGVQGEMKsTLEYPLDDFQEVMDINVVGSFIMLQAVSSSM-ASTGGGAIVNTASVAALQCTPTMVAYVASKAAVLGMTVAAAKDLAPHGIRVNAVSPALIGPG-FMWERQNALHAASGS--PyfandADAVAEAKVSAVPLKRLGTTAEVVATVAFLLSEEASYTTGANLVVSGGA 324
                 5999**********************************************************************************************97655056667****************9876555555.5667999*************************************************866555.689887766655443..2233448999999999999*********************************996 PP

>> TIGR01829  AcAcCoA_reduct: acetoacetyl-CoA reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  105.3   4.2   2.7e-33   8.5e-31       3     240 ..      69     324 ..      67     325 .] 0.83

  Alignments for each domain:
  == domain 1    score: 105.3 bits;  conditional E-value: 2.7e-33
   TIGR01829   3 alvtGglgGiGtaickrlakdGykvvanvapneerakewlqekev.egfdvavvkadvssfeeakaavakveaelGpvdvlvnnaGitrda.vfkkmtkeqWeevidtnlnsvfnvtrpviegmlergfGriinissvnGlkGqfGqanysaakaGliGftkalaqegakkgvtvnviaPGyiatemv....kav............redvlkkivaqiPvkrlgkpeeiaaavaflaseeagyvtGatlsvnGGl 240
                  l+ G+ g  G++ +  +a++G +++a  a++++ ++ +   k +  +   + +  d+ +  + +aav+   ++ G++d+  nnaG+  +         ++++ev+d+n+ + f + + v ++m+  g G i+n +sv  l+     + y a+ka ++G+t a a++ a +g+ vn+++P  i    +    +a+             + v ++ v+ +P+krlg+ +e+ a+vafl seea+y tGa+l v GG 
  MMETSP1137-20121227|3872_1  69 ILISGAGGNFGREGSLYFAAAGANIIAVDAAEAALKQTIDAVKLAhPNARCIGLVCDIRNAASVSAAVQAGIDAFGKIDLCWNNAGVQGEMkSTLEYPLDDFQEVMDINVVGSFIMLQAVSSSMASTGGGAIVNTASVAALQCTPTMVAYVASKAAVLGMTVAAAKDLAPHGIRVNAVSPALIGPGFMwerqNALhaasgspyfandADAVAEAKVSAVPLKRLGTTAEVVATVAFLLSEEASYTTGANLVVSGGA 324
                 6899***********************98877776666655443314555666789*******************************8764134467789******************************************************************************9877754322111122211112222221135688889***************************************95 PP

>> TIGR03206  benzo_BadH: 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  103.9   7.7   5.9e-33   1.9e-30       3     247 ..      66     323 ..      64     325 .] 0.90

  Alignments for each domain:
  == domain 1    score: 103.9 bits;  conditional E-value: 5.9e-33
   TIGR03206   3 dkvaivtgggggiggaicrrfaeegakvavldlnaeaaekvaaairekggkaeav..avditdrasvdaavaaaeealgpvdvlvnnagwd.vlkpflktekaewerliainltgalymhhavlkgmverkagrivniasdaarvgssgeavyaackgglvafsktlarelarhgitvnvvcp...gpt.....dtalledvkse..aekpeklieaftraiplgrlgkpddlagailflasddaafitgqvlsvsgg 247
                 +k+++++g gg  g    + fa  ga++  +d +  a ++  +a++ +  +a+++   +di + asv aav a  +a+g +d+  nnag +  +k+ l+    +++ ++ in++g++ m  av   m   + g ivn as aa   +     y a k  ++ ++ + a++la hgi vn v p   gp      + al +   s   a++++ + ea   a+pl rlg   ++  +++fl s++a++ tg  l vsgg
  MMETSP1137-20121227|3872_1  66 GKTILISGAGGNFGREGSLYFAAAGANIIAVDAAEAALKQTIDAVKLAHPNARCIglVCDIRNAASVSAAVQAGIDAFGKIDLCWNNAGVQgEMKSTLEYPLDDFQEVMDINVVGSFIMLQAVSSSMASTGGGAIVNTASVAALQCTPTMVAYVASKAAVLGMTVAAAKDLAPHGIRVNAVSPaliGPGfmwerQNALHAASGSPyfANDADAVAEAKVSAVPLKRLGTTAEVVATVAFLLSEEASYTTGANLVVSGG 323
                 79*******************************9999999999999999988875338*******************************86378899999999******************************************************************************995555532233256666555442338899**********************************************9 PP

>> TIGR01831  fabG_rel: putative 3-oxoacyl-(acyl-carrier-protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.9   5.9   3.4e-23   1.1e-20       1     237 [.      69     323 ..      69     325 .] 0.85

  Alignments for each domain:
  == domain 1    score: 71.9 bits;  conditional E-value: 3.4e-23
   TIGR01831   1 vlvtgasrgigraialklaadgfeiavhyrsdradaeesvaairaqggnarll..kfdvadrvavrevleadiaehgayygvvlnagiardaa.fpalseedwdavietnldgfynvihplvmpmirarkggriitlasvsgvmgnrgqvnysaakagligatkalavelakrkitvnciapglidtemvaevekdl.................kealklvpmkrvgkaeevaalaaflmsddaayvtrqvisvngg 237
                 +l++ga    gr  +l +aa+g +i   + + +a+ +++++a++    nar +    d+++  +v ++++a i++ g       nag++ +         +d++ v++ n+ g + +++ +   m     gg i+  asv+ +      v y a+ka ++g t a a +la   i vn ++p li  +++ e +++l                 + +++ vp+kr+g ++ev a +afl+s++a+y t   + v gg
  MMETSP1137-20121227|3872_1  69 ILISGAGGNFGREGSLYFAAAGANII-AVDAAEAALKQTIDAVKLAHPNARCIglVCDIRNAASVSAAVQAGIDAFGKIDLCWNNAGVQGEMKsTLEYPLDDFQEVMDINVVGSFIMLQAVSSSMAS-TGGGAIVNTASVAALQCTPTMVAYVASKAAVLGMTVAAAKDLAPHGIRVNAVSPALIGPGFMWERQNALhaasgspyfandadavaEAKVSAVPLKRLGTTAEVVATVAFLLSEEASYTTGANLVVSGG 323
                 68999**9****************95.56777888999*******999999862257*******************************9876414456679**************999999888865.6899*****************************************************99988776665521111111111111111235789*****************************99999998 PP

>> TIGR03325  BphB_TodD: cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.7   3.8   4.5e-24   1.4e-21       3     254 ..      64     323 ..      62     325 .] 0.81

  Alignments for each domain:
  == domain 1    score: 74.7 bits;  conditional E-value: 4.5e-24
   TIGR03325   3 lkdevvlvtggasglgralvdrfvaegarvavldksaaglee....leaahgd.kvvgvegdvrllddhkeavarcveafgkldtlipnagiwdystalvdipddrideafdevfeinvkgyllavkaalpalvasrgs.viftvsnagfypngggalytaakhavvglvkelayelapy.vrvngvapgglstdlrglksldladksis......svplgdllksvlpigrmadaeeytgayvffatrgdtvpltgavlnydgg 254
                 ++++ +l++g +  +gr     f a ga++  +d ++a l++    ++ ah++ + +g++ d+r  ++   av+  ++afgk+d   +nag+     + ++ p d     f+ev++inv g ++  +a+ + + ++ g+ ++ t s a +  +   + y a+k av+g+    a +lap+ +rvn v+p  ++  +   +   l   s s      +  +++   s +p+ r+ +++e     v f    ++  +tga l   gg
  MMETSP1137-20121227|3872_1  64 FDGKTILISGAGGNFGREGSLYFAAAGANIIAVDAAEAALKQtidaVKLAHPNaRCIGLVCDIRNAASVSAAVQAGIDAFGKIDLCWNNAGVQGEMKSTLEYPLD----DFQEVMDINVVGSFIMLQAVSSSMASTGGGaIVNTASVAALQCTPTMVAYVASKAAVLGMTVAAAKDLAPHgIRVNAVSPALIGPGFMWERQNALHAASGSpyfandADAVAEAKVSAVPLKRLGTTAEVVA-TVAFLLSEEASYTTGANLVVSGG 323
                 678899****************************9988765422227888985379**************************************99999999976....599***************999999887765166799**********************************98********9888665544444444433331111113345666678899999999998765.55556667888889998888887 PP

>> TIGR02685  pter_reduc_Leis: pteridine reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.7   7.6   6.4e-12     2e-09      59     262 ..     124     324 ..      67     325 .] 0.65

  Alignments for each domain:
  == domain 1    score: 34.7 bits;  conditional E-value: 6.4e-12
   TIGR02685  59 adlsnsasllssceeiidacfrafGrcdvlvnnasafyptpllrgdaeegaaekkslevqvaelfGsnaiaplllikafaqrqkgtraelrssnlsivnlvdamtdqpllgfslytmakealeGltrsaalelaslqirvngvapGl..........sllpdamp........eevkeeyrrkvplgqreasaeqiadvviflvskkakyitGtiikvdGGl 262
                 +d+ n+as+    ++ ++a   afG+ d+  nna        ++g+ +   + + +l+ +  e++  n +  +++++a +  ++ t++       +ivn +   + q  ++   y  +k a+ G+t +aa +la+++irvn+v+p l            l  a +        + v e     vpl +  ++ae +a  v+fl+s++a y tG+ + v GG 
  MMETSP1137-20121227|3872_1 124 CDIRNAASV----SAAVQAGIDAFGKIDLCWNNAG-------VQGEMKS--TLEYPLD-DFQEVMDINVVGSFIMLQAVSSSMASTGGG------AIVNTASVAALQCTPTMVAYVASKAAVLGMTVAAAKDLAPHGIRVNAVSPALigpgfmwerqNALHAASGspyfandaDAVAEAKVSAVPLKRLGTTAEVVA-TVAFLLSEEASYTTGANLVVSGGA 324
                 555555444....3444555556777777777765.......4444444..3334444.456777888888888888887777666654......6788777777788888999******************************9873332222222223332221111111123445556779**99998887776.689*******************95 PP

>> TIGR01500  sepiapter_red: sepiapterin reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3   0.2     1e-07   3.2e-05       3     170 ..      69     224 ..      67     243 .. 0.72

  Alignments for each domain:
  == domain 1    score: 21.3 bits;  conditional E-value: 1e-07
   TIGR01500   3 llvtGasrGfGrelaqelakrlkaegsvlvLlaRndeaLkeskaeie.aevsalsvdlvsldleaakdvedllkaleesikkeeyeri.llinnaGtlgdv.skrekelsDsknvqkyydsnvt.slvvltsellkklkelqglektvvnlssLcaikpfkswalYCaskaa 170
                 +l+ Ga   fGre +  +a      g  ++ +   + aLk++ + ++ a+ +a+ +     d+ +a+ v   ++a     + + + +i l  nnaG  g++ s  e  l D+++v    d nv+ s+++l++ +   +    +    +vn +s++a++  +++  Y askaa
  MMETSP1137-20121227|3872_1  69 ILISGAGGNFGREGSLYFAA----AGANIIAVDAAEAALKQTIDAVKlAHPNARCI-GLVCDIRNAASVSAAVQA-----GIDAFGKIdLCWNNAGVQGEMkSTLEYPLDDFQEVM---DINVVgSFIMLQA-VSSSMA--STGGGAIVNTASVAALQCTPTMVAYVASKAA 224
                 57788888888887766665....77788888888999999999999565555555.556799999966554443.....4566777735689****9998344566677777665...5555424444443.333333..233578***********************98 PP

>> TIGR02622  CDP_4_6_dhtase: CDP-glucose 4,6-dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   4.6e-06    0.0014       2     118 ..      64     191 ..      63     220 .. 0.81

  Alignments for each domain:
  == domain 1    score: 15.6 bits;  conditional E-value: 4.6e-06
   TIGR02622   2 wkgkkvlvtGhtGfkGsWlslwLkelGaevaGysldpetkpnlfellklakklkd.ssvlgdirdaeklekaieev.....kPeivfhla.aqplvrksYkdPletfe....tnvlGtvnlleavral 118
                 ++gk++l+ G  G  G   sl+ +  Ga+++      ++ +++ +++kla+        + dir+a+++++a++       k ++ +  a  q  +++  + Pl+ f+    +nv+G++ +l+av ++
  MMETSP1137-20121227|3872_1  64 FDGKTILISGAGGNFGREGSLYFAAAGANIIAVDAAEAALKQTIDAVKLAHPNARcIGLVCDIRNAASVSAAVQAGidafgKIDLCWNNAgVQGEMKSTLEYPLDDFQevmdINVVGSFIMLQAVSSS 191
                 789*****************************9999999999999998877543327899********999998632222366778777635889999999999877544448999999999998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (325 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       256  (0.0624086); expected 82.0 (0.02)
Passed bias filter:                      119  (0.0290102); expected 82.0 (0.02)
Passed Vit filter:                        24  (0.0058508); expected 4.1 (0.001)
Passed Fwd filter:                        14  (0.00341297); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.43u 0.19s 00:00:00.62 Elapsed: 00:00:01.21
# Mc/sec: 354.52
//
Query:       MMETSP1137-20121227|3873_1  [L=919]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.02   10.8   0.1       0.26    7.1   0.0    2.1  2  TIGR00870 trp: transient-receptor-potential calcium channel protein


Domain annotation for each model (and alignments):
>> TIGR00870  trp: transient-receptor-potential calcium channel protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.0    0.0037        15     134     155 ..     120     141 ..      75     150 .. 0.91
   2 ?    7.1   0.0   6.4e-05      0.26     180     268 ..     207     284 ..     177     290 .. 0.72

  Alignments for each domain:
  == domain 1    score: 1.2 bits;  conditional E-value: 0.0037
   TIGR00870 134 alilAihkqnyeivklLlekga 155
                 +l++A+ + + e++klLl+ g 
  MMETSP1137-20121227|3873_1 120 PLHVAVRNGDAEVLKLLLDWGL 141
                 9*****************9875 PP

  == domain 2    score: 7.1 bits;  conditional E-value: 6.4e-05
   TIGR00870 180 spLnlaaclasesivsllsedpAdiltadslgntllhllviesefkaeyeelstqmydfllslldklrdskeLEailNhqgltplklaa 268
                  pL  aa ++++s+v+ l++ +A++ ++d lg t lh ++  +          + + + +  lld  +d+      +N++g tpl+ a+
  MMETSP1137-20121227|3873_1 207 TPLHTAAEFGASSLVQCLVKAGAQVDLQDALGLTALHWAAGCT-------ISKQAVASTVQILLDANADP----NLCNYKGATPLAYAC 284
                 5899999999999999999999999999999999999877653.......22344555555566666666....677777777776665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (919 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        81  (0.0197465); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.16s 00:00:00.70 Elapsed: 00:00:01.46
# Mc/sec: 830.81
//
Query:       MMETSP1137-20121227|3874_1  [L=420]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (420 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       113  (0.0275475); expected 82.0 (0.02)
Passed bias filter:                      109  (0.0265724); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.18s 00:00:00.49 Elapsed: 00:00:01.70
# Mc/sec: 326.09
//
Query:       MMETSP1137-20121227|3875_1  [L=240]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      6e-29   99.5   0.0    6.8e-29   99.3   0.0    1.0  1  TIGR01484 HAD-SF-IIB: HAD hydrolase, family IIB
    2.8e-08   31.5   0.0    1.5e-06   25.8   0.0    2.0  2  TIGR00099 Cof-subfamily: Cof-like hydrolase
     0.0016   15.8   0.0     0.0026   15.2   0.0    1.2  1  TIGR01485 SPP_plant-cyano: sucrose phosphatase
  ------ inclusion threshold ------
      0.011   13.1   0.0       0.18    9.2   0.0    2.2  2  TIGR01482 SPP-subfamily: sucrose-phosphate phosphatase subfamily
      0.018   12.7   0.0       0.04   11.6   0.0    1.6  2  TIGR01487 SPP-like: SPP-like hydrolase, Archaeal


Domain annotation for each model (and alignments):
>> TIGR01484  HAD-SF-IIB: HAD hydrolase, family IIB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.3   0.0   8.3e-32   6.8e-29       7     220 ..       2     222 ..       1     223 [. 0.89

  Alignments for each domain:
  == domain 1    score: 99.3 bits;  conditional E-value: 8.3e-32
   TIGR01484   7 DgTLldpklelseelieaLerlrealgvkvvivTGRslaeikellkqlnlelpliaengalieaqgeklyaea..lpedvaevllseekelkeieailksls..eryv..gtfvedkalevaihysgqk.eleqeldskllerlekigir............kdleleailsrsnalqkegetllevlpagvdKgkalqalleelnlkkeeilafGD....sgNDeemlevaglava 220
                 DgTL+ p+ ++ +e+   L++lr++  vk+++v G++l+++ke++       + ++  ++++ ++g++ y++    ++++ ++ l++ek +k i++ilk++s  ++    gtfve+++ ++++++ g++   e++ + ++l+ +e    +            +++++++++s        g+  ++++p g+dK+++lq++        +ei+++GD    +gND+e++e ++++++
  MMETSP1137-20121227|3875_1   2 DGTLTQPRKKIEPETLAFLKELRQK--VKIGVVGGSDLSKQKEQIG-----SNCLELFDYFFPENGLEAYKDGklIKKTSIKEHLGNEKLNKLINFILKYISelDIPIkrGTFVEFRNGMLNVSPIGRNcSQEERDEFERLDIHEG---NgwrakfvavlrdEFADYDLTFSIG------GQISFDIFPRGWDKTFCLQFVEPPIETGFSEIHFCGDktyeGGNDYEIYESPKTIGH 222
                 9************************..*******************.....79999999*************9*999*************************98444466****************98644333333333333333...255578******99999*****988......*********************98888888**********************999876 PP

>> TIGR00099  Cof-subfamily: Cof-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.8   0.0   1.8e-09   1.5e-06       7      94 ..       2      93 ..       1     111 [. 0.79
   2 !    4.0   0.0    0.0085         7     166     214 ..     156     204 ..     123     218 .. 0.84

  Alignments for each domain:
  == domain 1    score: 25.8 bits;  conditional E-value: 1.8e-09
   TIGR00099  7 DGTLlskdkeispetkealaklrekGikvvlaTGRsykevkeilkelgld..plivanGaavvdengkeilykkpldl....dlveeilnilkk 94
                DGTL ++ k+i+pet+ +l++lr+k +k+ ++ G + ++ ke+  ++ l+   +++ ++++  ++ g +++ k+ +++    + +++++n++ k
  MMETSP1137-20121227|3875_1  2 DGTLTQPRKKIEPETLAFLKELRQK-VKIGVVGGSDLSKQKEQIGSNCLElfDYFFPENGLEAYKDG-KLIKKTSIKEhlgnEKLNKLINFILK 93
                9************************.**********8888888887777779999999999888887.56666665551111555555555544 PP

  == domain 2    score: 4.0 bits;  conditional E-value: 0.0085
   TIGR00099 166 leeelsvvsssedsieitakgvsKgsalqslaeklgislenviaiGDse 214
                  +  l++++ ++ s++i ++g +K   lq++   +    +++  +GD  
  MMETSP1137-20121227|3875_1 156 ADYDLTFSIGGQISFDIFPRGWDKTFCLQFVEPPIETGFSEIHFCGDKT 204
                 4667788889999*********************************963 PP

>> TIGR01485  SPP_plant-cyano: sucrose phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0   3.1e-06    0.0026     143     209 ..     152     224 ..     143     230 .. 0.82

  Alignments for each domain:
  == domain 1    score: 15.2 bits;  conditional E-value: 3.1e-06
   TIGR01485 143 eksgldvkliyssG..kdldilPqgadkgqalqylleklkiepsqtlvCGd....sGndielfeisdvrGviv 209
                  +   d  l +s G  + +di P+g dk   lq++   +++  s+   CGd     Gnd e++e +++ G  v
  MMETSP1137-20121227|3875_1 152 RDEFADYDLTFSIGgqISFDIFPRGWDKTFCLQFVEPPIETGFSEIHFCGDktyeGGNDYEIYESPKTIGHTV 224
                 5555667788887633579*******************************9554459*******999888666 PP

>> TIGR01482  SPP-subfamily: sucrose-phosphate phosphatase subfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.0     0.031        25       6      39 ..       2      34 ..       1     100 [. 0.70
   2 ?    9.2   0.0   0.00022      0.18     137     184 ..     166     217 ..     125     231 .. 0.87

  Alignments for each domain:
  == domain 1    score: 2.1 bits;  conditional E-value: 0.031
   TIGR01482  6 DgTlvdeeralnlsaleairkaesvyillvlvtG 39
                DgTl+++ ++++ + l +++   ++  ++ +v G
  MMETSP1137-20121227|3875_1  2 DGTLTQPRKKIEPETLAFLKELRQKV-KIGVVGG 34
                99*****9999999999988765333.4444444 PP

  == domain 2    score: 9.2 bits;  conditional E-value: 0.00022
   TIGR01482 137 sGkdldilpkgvdKGkavkylkeklgikpeeilviGD....SeNDidlFeva 184
                 +  ++di p+g dK + ++++   +    +ei  +GD    ++ND++++e +
  MMETSP1137-20121227|3875_1 166 GQISFDIFPRGWDKTFCLQFVEPPIETGFSEIHFCGDktyeGGNDYEIYESP 217
                 45689*****************99999999*******888889*****9987 PP

>> TIGR01487  SPP-like: SPP-like hydrolase, Archaeal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   4.9e-05      0.04       9      66 ..       2      60 ..       1     106 [. 0.75
   2 ?   -2.3   0.0      0.86     7e+02     139     180 ..     170     215 ..     142     219 .. 0.65

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 4.9e-05
   TIGR01487  9 DgTltdknrlislraieairklekkGikvvlvtGnev..kfvealavligvsgavvaEnG 66
                DgTlt++ + i+++ + ++++l++k +k+ +v G     +  +  +  +++ + ++ EnG
  MMETSP1137-20121227|3875_1  2 DGTLTQPRKKIEPETLAFLKELRQK-VKIGVVGGSDLskQKEQIGSNCLELFDYFFPENG 60
                9**********************99.******9985410333344667777777777776 PP

  == domain 2    score: -2.3 bits;  conditional E-value: 0.86
   TIGR01487 139 vhilkkgvdKgvgvkklkellGlkkeevaaiGD....senDldlFr 180
                 + i ++g dK + ++++   +     e+   GD    + nD+++++
  MMETSP1137-20121227|3875_1 170 FDIFPRGWDKTFCLQFVEPPIETGFSEIHFCGDktyeGGNDYEIYE 215
                 5567777777777777765433333347777773333457777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (240 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        97  (0.023647); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.22u 0.16s 00:00:00.38 Elapsed: 00:00:00.36
# Mc/sec: 879.93
//
Query:       MMETSP1137-20121227|3876_1  [L=200]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (200 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        77  (0.0187713); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.17s 00:00:00.36 Elapsed: 00:00:00.52
# Mc/sec: 507.65
//
Query:       MMETSP1137-20121227|3877_1  [L=101]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        58  (0.0141394); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.12s 00:00:00.25 Elapsed: 00:00:00.28
# Mc/sec: 459.69
//
Query:       MMETSP1137-20121227|3878_1  [L=393]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0016   16.3   0.1     0.0033   15.3   0.1    1.5  1  TIGR00586 mutt: mutator mutT protein
  ------ inclusion threshold ------
      0.049   11.0   0.0      0.073   10.4   0.0    1.2  1  TIGR02705 nudix_YtkD: nucleoside triphosphatase YtkD


Domain annotation for each model (and alignments):
>> TIGR00586  mutt: mutator mutT protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.1   1.6e-06    0.0033      32      65 ..     159     192 ..     149     206 .. 0.83

  Alignments for each domain:
  == domain 1    score: 15.3 bits;  conditional E-value: 1.6e-06
   TIGR00586  32 nklefPGGkieaGetpeqavvrelqeevgitaqh 65 
                 +++  PGG ++aGe    ++ re  ee g ++ +
  MMETSP1137-20121227|3878_1 159 GEWAIPGGMVDAGELVSATLRREFMEEAGNVPSE 192
                 67999***********************988765 PP

>> TIGR02705  nudix_YtkD: nucleoside triphosphatase YtkD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   3.6e-05     0.073      49      75 ..     163     189 ..     150     231 .. 0.90

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 3.6e-05
   TIGR02705  49 fPGGkveegetskeaaiRevleetGai 75 
                  PGG v+ ge   +   Re +ee G +
  MMETSP1137-20121227|3878_1 163 IPGGMVDAGELVSATLRREFMEEAGNV 189
                 7***********************976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (393 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        63  (0.0153584); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.27u 0.16s 00:00:00.43 Elapsed: 00:00:00.63
# Mc/sec: 823.36
//
Query:       MMETSP1137-20121227|3880_1  [L=524]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      1e-51  173.8   4.8    5.5e-48  161.5   2.5    2.1  2  TIGR01297 CDF: cation diffusion facilitator family transporter


Domain annotation for each model (and alignments):
>> TIGR01297  CDF: cation diffusion facilitator family transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  161.5   2.5   1.3e-51   5.5e-48      32     281 ..     100     341 ..      92     344 .. 0.95
   2 !   11.2   0.0   8.4e-06     0.034     237     281 ..     449     493 ..     436     496 .. 0.87

  Alignments for each domain:
  == domain 1    score: 161.5 bits;  conditional E-value: 1.3e-51
   TIGR01297  32 laDaaHslsDvaaliiallalrisrkpaderhpfGygraeiLaallnalflvvvalfilyeAierlinpeeeiegslmlivaivglivnlilalllkraGkkesslalraaalhvlsDllsSvgvligvlliyfggwkiaDpiaslvisvlilktafrllkesievLleaapdeeldlievkkkilkiegvksvhdlhiwrigsgklvldvhvevdpelsakeaheialeiereilkrepevshvtiqve 281
                 +aDaaHs+sD+++ +++l+al  s++pa e hp+G g+ e ++a + a+++v+++l + y+++  li+      +++++++ai+gl+++++l++ + r G  ++s+al a+a+h+++D++sSv++l+g+ +++ g ++ +D++ ++v++v++ + +++++ e++++L ++ + ee  l +v + +    +v ++++l+ +r+g+ +++++++++v  +ls++ a++ia + + ++lk  pev +vt+ ++
  MMETSP1137-20121227|3880_1 100 IADAAHSFSDLLSDAVTLWALAQSKRPACELHPYGRGKYEAVGASVTAAMIVGTGLGVGYHSVCGLIE-----VMGTAAAAAIAGLLAKELLYRETLRIGTLARSPALLANAWHHRTDAFSSVVALVGICGSICG-YHALDSVGGVVVAVMVTRAGIQMGAENFAQLTDSQV-EEDVLAQVDALAADDVDVLGITSLRCRRLGP-YIHVEMRLQVPFGLSVSAAQQIATKAKLRVLKGMPEVADVTVSLD 341
                 8*****************************************************************88.....5799********************************************************99.************************************.5666666555555777899************.******************************************886 PP

  == domain 2    score: 11.2 bits;  conditional E-value: 8.4e-06
   TIGR01297 237 klvldvhvevdpelsakeaheialeiereilkrepevshvtiqve 281
                    +++++++dpe +++eah +a +i+r++l++ p+v +v +++e
  MMETSP1137-20121227|3880_1 449 GAIVEASLVLDPETRLREAHLMAAAIRRAVLRQVPDVRDVDLHLE 493
                 46799**************************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (524 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       191  (0.0465627); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.17s 00:00:00.55 Elapsed: 00:00:01.07
# Mc/sec: 646.38
//
Query:       MMETSP1137-20121227|3881_1  [L=417]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.4e-14   49.3   0.0    8.4e-14   48.7   0.0    1.2  1  TIGR01389 recQ: ATP-dependent DNA helicase RecQ
    2.7e-11   40.7   0.0      4e-11   40.2   0.0    1.1  1  TIGR00614 recQ_fam: ATP-dependent DNA helicase, RecQ family
    1.1e-07   28.3   0.5    1.8e-07   27.6   0.3    1.3  1  TIGR03817 DECH_helic: helicase/secretion neighborhood putative DEAH-box helicase
    2.1e-07   27.4   0.5    6.3e-07   25.8   0.0    1.8  2  TIGR00631 uvrb: excinuclease ABC subunit B
    1.5e-06   24.1   0.1    1.8e-06   23.7   0.0    1.1  1  TIGR04121 DEXH_lig_assoc: DEXH box helicase, DNA ligase-associated
    3.2e-06   23.9   0.0    6.7e-06   22.9   0.0    1.5  1  TIGR00643 recG: ATP-dependent DNA helicase RecG
    4.4e-05   19.8   0.0    6.4e-05   19.3   0.0    1.1  1  TIGR00580 mfd: transcription-repair coupling factor
     0.0011   16.0   0.0     0.0033   14.4   0.0    1.7  1  TIGR01587 cas3_core: CRISPR-associated helicase Cas3


Domain annotation for each model (and alignments):
>> TIGR01389  recQ: ATP-dependent DNA helicase RecQ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.7   0.0   1.6e-16   8.4e-14     216     332 ..     130     246 ..     116     256 .. 0.91

  Alignments for each domain:
  == domain 1    score: 48.7 bits;  conditional E-value: 1.6e-16
   TIGR01389 216 leylkkereksGiiYassRkkveelaeaLeskgiealaYhaGlskkvRaeaqekFleddvkvvvatvaFGmGidksdvRfvihldlPknlesyyqeaGRaGRDGlkaeaillyseaD 332
                 ++   k++++  i+++s++++ +el        + a + h+ +s+++R+ ++++F e + +v+vat     Gid s v  ++ + lP++ +sy   +GR GR G+   ++llys ++
  MMETSP1137-20121227|3881_1 130 ITVYGKDEDSRTIVFTSTKREADELCVSAALAPLGAQPMHGDVSQAQRDLTLKRFREGHFAVLVATDVAARGIDISGVDLIVQYRLPNDADSYVHRSGRTGRAGRSGVSLLLYSDRE 246
                 444556667789**************99999**********************************************************************************9865 PP

>> TIGR00614  recQ_fam: ATP-dependent DNA helicase, RecQ family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.2   0.0   7.8e-14     4e-11     219     333 ..     132     245 ..     120     264 .. 0.89

  Alignments for each domain:
  == domain 1    score: 40.2 bits;  conditional E-value: 7.8e-14
   TIGR00614 219 fivkefkgksGiiYClsrkkveqvaaeLqkkglaaaaYhagleesarkevqkkflrdeiqvvvatvafGmGinkpdvRfvihyslpksiesYYqesGRaGRDglksecvlfyapa 333
                    k+ + ++ i++  ++++++++  +     l a+  h ++++++r+   k+f + +  v+vat     Gi+ + v  ++ y lp + +sY   sGR GR g    ++l+y+  
  MMETSP1137-20121227|3881_1 132 VYGKDEDSRT-IVFTSTKREADELCVSAALAPLGAQPMHGDVSQAQRDLTLKRFREGHFAVLVATDVAARGIDISGVDLIVQYRLPNDADSYVHRSGRTGRAGRSGVSLLLYSDR 245
                 4444445555.******************************************************9999******************************************9865 PP

>> TIGR03817  DECH_helic: helicase/secretion neighborhood putative DEAH-box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.6   0.3   3.4e-10   1.8e-07     263     385 ..     125     244 ..      73     249 .. 0.81

  Alignments for each domain:
  == domain 1    score: 27.6 bits;  conditional E-value: 3.4e-10
   TIGR03817 263 lladlv.....aegvrtltfvrsrrgaevvaleakerlaevdaelaervaayraGylaedrrele.ralkdGellgvaatnalelGvdisGldavviaGfPGtvaslwqqaGraGrrgqdalvvlvard 385
                  ladl+     +e+ rt++f  ++r+a+ ++++a+         la   a    G +++ +r+l  +++++G++  ++at+    G+disG+d +v    P    s+  ++Gr+Gr+g+  + +l+ +d
  MMETSP1137-20121227|3881_1 125 TLADLItvygkDEDSRTIVFTSTKREADELCVSAA---------LAPLGAQPMHGDVSQAQRDLTlKRFREGHFAVLVATDVAARGIDISGVDLIVQYRLPNDADSYVHRSGRTGRAGRSGVSLLLYSD 244
                 55555522222477888888888888887776654.........3333344456777777777763789***************************************************999998766 PP

>> TIGR00631  uvrb: excinuclease ABC subunit B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.1      0.17        88     488     521 ..       7      44 ..       5      64 .. 0.77
   2 !   25.8   0.0   1.2e-09   6.3e-07     441     517 ..     136     212 ..     124     254 .. 0.82

  Alignments for each domain:
  == domain 1    score: -1.1 bits;  conditional E-value: 0.17
   TIGR00631 488 dLrkgefdvlvG.....inLLreGlDlPevslvailDad 521
                  Lr+g +dvlvG     i+ L + lDl ev +  + +ad
  MMETSP1137-20121227|3881_1   7 ALREG-IDVLVGtpgriIDHLNDKLDLSEVKFAVLDEAD 44 
                 56665.89999988887899**********985544465 PP

  == domain 2    score: 25.8 bits;  conditional E-value: 1.2e-09
   TIGR00631 441 aknervlvttltkkmaedltdylkelgikvkylhseidtlerveiirdLrkgefdvlvGinLLreGlDlPevslvai 517
                 +++ r++v t tk+ a++l+   + + + ++ +h ++   +r   ++ +r+g+f vlv  ++   G+D+  v l+  
  MMETSP1137-20121227|3881_1 136 DEDSRTIVFTSTKREADELCVSAALAPLGAQPMHGDVSQAQRDLTLKRFREGHFAVLVATDVAARGIDISGVDLIVQ 212
                 6789*********************************************************************9864 PP

>> TIGR04121  DEXH_lig_assoc: DEXH box helicase, DNA ligase-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.7   0.0   3.6e-09   1.8e-06     240     345 ..     131     231 ..       3     246 .. 0.62

  Alignments for each domain:
  == domain 1    score: 23.7 bits;  conditional E-value: 3.6e-09
   TIGR04121 240 evleeikkarttlvFtNtRsqa.EllfqaLleaneelaleialhHgsldkeqRekveaalkagklravvcTssLdLGvDfgdvdlviqvGspkgvaRllQRiGRsnH 345
                 +v+ + ++ + t+vFt t+  a El+  a l+      l     Hg ++++qR+   + +++g++ ++v+T     G+D + vdl++q   p  +   + R GR++ 
  MMETSP1137-20121227|3881_1 131 TVYGK-DEDSRTIVFTSTKREAdELCVSAALAP-----LGAQPMHGDVSQAQRDLTLKRFREGHFAVLVATDVAARGIDISGVDLIVQYRLPNDADSYVHRSGRTGR 231
                 33333.566789******888824444332222.....222345************************************************************875 PP

>> TIGR00643  recG: ATP-dependent DNA helicase RecG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.9   0.0   1.3e-08   6.7e-06     477     583 ..     157     261 ..     124     265 .. 0.80

  Alignments for each domain:
  == domain 1    score: 22.9 bits;  conditional E-value: 1.3e-08
   TIGR00643 477 kkafpklnvallhgrlksdekeevleeFrekevdiLvaTtviEvGvdvPnatvmviedaeRfGlsqLHQLRGRvgRgekksyclLvaepkseeakkRLrvlaetldG 583
                 ++a++ l  + +hg +++++++  l++Fre++  +LvaT v   G+d+  + ++v +       s  H   GR gR  + ++ lL++ +  e+    + +l  + dG
  MMETSP1137-20121227|3881_1 157 SAALAPLGAQPMHGDVSQAQRDLTLKRFREGHFAVLVATDVAARGIDISGVDLIVQYRLPNDADSYVHR-SGRTGRAGRSGVSLLLY-SDREARDVSMSALGRQGDG 261
                 45556777788********************************************98877778899998.6***************9.4444445566666666666 PP

>> TIGR00580  mfd: transcription-repair coupling factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.0   1.3e-07   6.4e-05     690     769 ..     168     246 ..     160     257 .. 0.85

  Alignments for each domain:
  == domain 1    score: 19.3 bits;  conditional E-value: 1.3e-07
   TIGR00580 690 aHgqmeeeeleevmleFlkkefdvLvcTtiiEsGidipnaNTiiierAdkfGlaqLyQLrGRvGRskkkayayllvpsqk 769
                 +Hg +++ + + ++++F +++f vLv+T +   Gidi+ +  i+  r  +   +  +   GR GR  + + + ll+ +++
  MMETSP1137-20121227|3881_1 168 MHGDVSQAQRDLTLKRFREGHFAVLVATDVAARGIDISGVDLIVQYRLPNDADSYVHR-SGRTGRAGRSGVSLLLYSDRE 246
                 6***************************************988776665554444554.59******9999999998876 PP

>> TIGR01587  cas3_core: CRISPR-associated helicase Cas3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.0   6.4e-06    0.0033     129     321 ..      39     234 ..      28     240 .. 0.66

  Alignments for each domain:
  == domain 1    score: 14.4 bits;  conditional E-value: 6.4e-06
   TIGR01587 129 iiDEvhayeey.tkalllallevlkdvdvkillmsAtlpkllkeylekielv...eenealdlkeekrfenqrisliekdkleeisslerlleal..kkekkvliivNtVdrAqelyqklkekapeeeiiLlHsrftekdrekkEaellkelkknekfvivaTQviEvslDis.vdvlitelap..idsLiQRlGRlaRygr 321
                 ++DE++ + +   k  ++++l++      + +l sAt p  ++  ++k+ +    ++      +++    ++   l+   +    ++l +l+  +  ++ ++ +++  t ++A el   +   ap +    +H+  ++  r      +lk++++ +  v+vaT v+  ++Dis vd+++    p  +ds + R GR  R gr
  MMETSP1137-20121227|3881_1  39 VLDEADEMLNMgFKDDVETILDATNAEIRQTVLFSATHPPWVQSVARKYLNKpvtVDVVGAGHSQAATTVEHIAVLTPGSDAARGRTLADLITVYgkDEDSRTIVFTSTKREADELCVSAA-LAP-LGAQPMHGDVSQAQRDL----TLKRFREGHFAVLVATDVAARGIDISgVDLIVQYRLPndADSYVHRSGRTGRAGR 234
                 7788875555414555888888888666777888888884444444444332000233333333344444555556666667777778888665521445556666667777877655444.344.34557888888877754....5******999***************97788888777744789*********9887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (417 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       153  (0.0372989); expected 82.0 (0.02)
Passed bias filter:                      124  (0.0302292); expected 82.0 (0.02)
Passed Vit filter:                        21  (0.00511945); expected 4.1 (0.001)
Passed Fwd filter:                         8  (0.00195027); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.44u 0.14s 00:00:00.58 Elapsed: 00:00:00.87
# Mc/sec: 632.64
//
Query:       MMETSP1137-20121227|3882_1  [L=269]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (269 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       101  (0.0246221); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.12s 00:00:00.32 Elapsed: 00:00:00.45
# Mc/sec: 789.00
//
Query:       MMETSP1137-20121227|3883_1  [L=323]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (323 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        85  (0.0207216); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.16s 00:00:00.41 Elapsed: 00:00:00.49
# Mc/sec: 870.05
//
Query:       MMETSP1137-20121227|3884_1  [L=590]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (590 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       107  (0.0260848); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.15s 00:00:00.55 Elapsed: 00:00:00.51
# Mc/sec: 1526.93
//
Query:       MMETSP1137-20121227|3885_1  [L=138]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.5e-27   91.8   0.1      1e-26   91.6   0.0    1.0  1  TIGR00033 aroC: chorismate synthase


Domain annotation for each model (and alignments):
>> TIGR00033  aroC: chorismate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.6   0.0   2.5e-30     1e-26     264     349 ..      14      99 ..       7     101 .. 0.92

  Alignments for each domain:
  == domain 1    score: 91.6 bits;  conditional E-value: 2.5e-30
   TIGR00033 264 dkirrktnnsGGieGGitnGedirvriavKpiptikkplktvdletkekakatkgRhDpcvvpravpvvEamvalvladallekra 349
                   +++ tn  GG++GGit G++i++++avKp++ti++++kt +l++++ +  +kgRhDpcv+pr  p+vE m alvlada+l +r+
  MMETSP1137-20121227|3885_1  14 AALTTSTNYAGGTLGGITSGTPIYFKVAVKPVSTIGQAQKTTTLTGEQVVLEAKGRHDPCVLPRTPPLVEGMAALVLADAALLQRT 99 
                 568999**************************************888888888***************************998875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (138 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        66  (0.0160897); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.18u 0.13s 00:00:00.31 Elapsed: 00:00:00.30
# Mc/sec: 607.15
//
Query:       MMETSP1137-20121227|3887_1  [L=117]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (117 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        63  (0.0153584); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.32
# Mc/sec: 482.59
//
Query:       MMETSP1137-20121227|3888_1  [L=130]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.036   11.8   0.0      0.052   11.3   0.0    1.3  1  TIGR03859 PQQ_PqqD: coenzyme PQQ biosynthesis protein PqqD


Domain annotation for each model (and alignments):
>> TIGR03859  PQQ_PqqD: coenzyme PQQ biosynthesis protein PqqD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   1.3e-05     0.052       4      43 ..      70     109 ..      67     119 .. 0.82

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 1.3e-05
   TIGR03859   4 rrgyRlqwerardayvlLyPEgmvkLnesAgailelvdGk 43 
                 r g+Rlq   a +++vl  PE +  ++  A+    +   k
  MMETSP1137-20121227|3888_1  70 RTGFRLQVRLANGVHVLAIPELAYFIDPEASSFTIRSASK 109
                 789*******************999999888766555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (130 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        77  (0.0187713); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.16u 0.16s 00:00:00.32 Elapsed: 00:00:00.26
# Mc/sec: 659.95
//
Query:       MMETSP1137-20121227|3889_1  [L=212]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (212 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        32  (0.00780107); expected 82.0 (0.02)
Passed bias filter:                       30  (0.00731351); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.15s 00:00:00.34 Elapsed: 00:00:00.25
# Mc/sec: 1119.27
//
Query:       MMETSP1137-20121227|3890_1  [L=67]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (67 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        25  (0.00609459); expected 82.0 (0.02)
Passed bias filter:                       25  (0.00609459); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.15s 00:00:00.28 Elapsed: 00:00:00.35
# Mc/sec: 252.66
//
Query:       MMETSP1137-20121227|3891_1  [L=319]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (319 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       116  (0.0282789); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.14s 00:00:00.40 Elapsed: 00:00:00.36
# Mc/sec: 1169.57
//
Query:       MMETSP1137-20121227|3892_1  [L=81]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.026   12.5   0.1      0.032   12.2   0.0    1.2  1  TIGR00013 taut: 4-oxalocrotonate tautomerase family enzyme


Domain annotation for each model (and alignments):
>> TIGR00013  taut: 4-oxalocrotonate tautomerase family enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   7.8e-06     0.032       1      35 [.      10      45 ..      10      58 .. 0.87

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 7.8e-06
   TIGR00013  1 MPivnikilke.GrtdEqKreLiekvtelvaetlga 35
                MP+v++  l++  rt+E +++    + ++++ + +a
  MMETSP1137-20121227|3892_1 10 MPFVQVTWLPKaARTAEVRKQVADAIIKAMVGVKEA 45
                *******99888**********99999999987665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (81 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       138  (0.0336421); expected 82.0 (0.02)
Passed bias filter:                      136  (0.0331546); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.38
# Mc/sec: 281.35
//
Query:       MMETSP1137-20121227|3893_1  [L=301]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (301 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        64  (0.0156021); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.17s 00:00:00.41 Elapsed: 00:00:00.43
# Mc/sec: 923.92
//
Query:       MMETSP1137-20121227|3894_1  [L=194]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0071   11.9   6.5      0.009   11.6   4.5    1.1  1  TIGR02168 SMC_prok_B: chromosome segregation protein SMC
  ------ inclusion threshold ------
      0.011   11.2   5.5      0.014   10.9   3.8    1.1  1  TIGR02169 SMC_prok_A: chromosome segregation protein SMC


Domain annotation for each model (and alignments):
>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.6   4.5   4.4e-06     0.009     679     816 ..      22     160 ..       8     190 .. 0.60

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 4.4e-06
   TIGR02168 679 keieeleeeieeleekiaelekelkelekeleeleeeleklrkeleelerklselkkelerlekeveqleerlaqlekeleeleeereeleeeleeaeeelkeaeeeieeleaeieqlkeelkalrealseleaelt.e 816
                 +++  +e  ++++++ +++ +++lk+++ +l   +++ +  +k++ + +++  + k+  +     +  +e ++a++e++le++++ +  l ++ +++eee+  a +++++  ++ ++ kee++++r ++ e +a +t e
  MMETSP1137-20121227|3894_1  22 QSLTGVEGGLADAKQVLQDEQQRLKKVKAQLAHNRKKQKYHEKRIXDCHNHCVKSKTFCQPCLWCSGGVEGKIAREEQKLEDFKAAEPGLVAKEKKLEEETVPAAQKRKDGLEDQNARKEEINNERLQMYEGQAVATwE 160
                 4444445555555555555555555555555555555555555555555555666666666666666666677777777777777777777766777666666666666666666666666666666666555554433 PP

>> TIGR02169  SMC_prok_A: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   3.8   6.7e-06     0.014     351     477 ..      22     148 ..      12     182 .. 0.66

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 6.7e-06
   TIGR02169 351 kereklkeelkelkeeleelraeleevdkeaaelreelkelkekleklkeelnelkreldrlleelkrleeelaelkaelerieekiaeleeeleelaeeikkaeqkleqlkedlekaekelrklke 477
                 +  + ++  l+++k++l++ +++l++v+++ a+ r+++k  ++++ + +++  ++k+  +  l  +  +e ++a+ +++le+ +++   l ++ ++l+ee   a qk++   ed ++ ++e+ + + 
  MMETSP1137-20121227|3894_1  22 QSLTGVEGGLADAKQVLQDEQQRLKKVKAQLAHNRKKQKYHEKRIXDCHNHCVKSKTFCQPCLWCSGGVEGKIAREEQKLEDFKAAEPGLVAKEKKLEEETVPAAQKRKDGLEDQNARKEEINNERL 148
                 4455555666677777777777777777777777777777777777777777777766666666777777777777777777777777777777777776666666666666666666666655443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (194 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       305  (0.074354); expected 82.0 (0.02)
Passed bias filter:                      170  (0.0414432); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.24u 0.15s 00:00:00.39 Elapsed: 00:00:00.40
# Mc/sec: 640.15
//
Query:       MMETSP1137-20121227|3895_1  [L=191]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (191 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       104  (0.0253535); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.15s 00:00:00.34 Elapsed: 00:00:00.37
# Mc/sec: 681.35
//
Query:       MMETSP1137-20121227|3896_1  [L=153]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00088   16.2   0.1     0.0011   15.9   0.1    1.3  1  TIGR02631 xylA_Arthro: xylose isomerase


Domain annotation for each model (and alignments):
>> TIGR02631  xylA_Arthro: xylose isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.1   2.7e-07    0.0011     212     291 ..      26     106 ..       1     134 [. 0.76

  Alignments for each domain:
  == domain 1    score: 15.9 bits;  conditional E-value: 2.7e-07
   TIGR02631 212 lnpevgheqma.glnfthgiaqalwaeklfhidlngq.rgikfdqdlvfGagdlkaafflvdllesggydGprhfdykpsrt 291
                 l +e+  e+m  +l+  h++a     +klf ++ln+  +    +  l+fG+ + + a+  v  l+++++dG  +fd  p   
  MMETSP1137-20121227|3896_1  26 LVNEINRENMGlTLDIGHCLAVG-ARGKLFGVQLNDGyQRLGAEDGLMFGSVHPHMALEFVHWLQKTNFDGHIYFDTFPRNE 106
                 45677778875356666776654.579********85144556778******************************987543 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (153 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        85  (0.0207216); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.18u 0.17s 00:00:00.35 Elapsed: 00:00:00.28
# Mc/sec: 696.36
//
Query:       MMETSP1137-20121227|3897_1  [L=186]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (186 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       100  (0.0243784); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.17s 00:00:00.36 Elapsed: 00:00:00.26
# Mc/sec: 944.23
//
Query:       MMETSP1137-20121227|3898_1  [L=375]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.1e-15   53.9   0.0    5.9e-15   53.4   0.0    1.2  1  TIGR01017 rpsD_bact: ribosomal protein S4
      4e-05   21.5   0.0    7.8e-05   20.5   0.0    1.4  1  TIGR01018 rpsD_arch: ribosomal protein S4


Domain annotation for each model (and alignments):
>> TIGR01017  rpsD_bact: ribosomal protein S4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.4   0.0   2.9e-18   5.9e-15      45     154 ..      86     192 ..      59     208 .. 0.78

  Alignments for each domain:
  == domain 1    score: 53.4 bits;  conditional E-value: 2.9e-18
   TIGR01017  45 YglqLqekqklkllYG.itekqlrklfkeakklkgntgenllellesRLDnvvyrlgfaktraaArQLvsHghilvngkkvdipsyqvkpgdlisikekskklklvkeale 154
                 Y++ L+ k++l +    +    l+kl +     +  t +++++ +esRLD v +rlg+a++++a r L++ ghi+vng++ ++p+  ++p d+i++k +    + +k++++
  MMETSP1137-20121227|3898_1  86 YTTSLEIKKRLLAQAPhMGGTYLKKLCRRH--VRKGTYNSFVAEFESRLDRVCWRLGLAPSMFAIRFLLTRGHIMVNGRVTTRPAATLRPMDIIEVKPSAV--PFLKKNIQ 192
                 555555555554443323345555555544..44567899********************************************************98754..44455544 PP

>> TIGR01018  rpsD_arch: ribosomal protein S4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   0.0   3.8e-08   7.8e-05     103     142 ..     129     168 ..     122     175 .. 0.93

  Alignments for each domain:
  == domain 1    score: 20.5 bits;  conditional E-value: 3.8e-08
   TIGR01018 103 errlqtlvykkGlaktikqarqlivhghiavdgrvvtsPs 142
                 e rl  + ++ Gla ++   r l+++ghi v+grv t P+
  MMETSP1137-20121227|3898_1 129 ESRLDRVCWRLGLAPSMFAIRFLLTRGHIMVNGRVTTRPA 168
                 789********************************99997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (375 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        77  (0.0187713); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.28u 0.13s 00:00:00.41 Elapsed: 00:00:00.41
# Mc/sec: 1207.22
//
Query:       MMETSP1137-20121227|3899_1  [L=237]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (237 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       159  (0.0387616); expected 82.0 (0.02)
Passed bias filter:                      108  (0.0263286); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.13s 00:00:00.35 Elapsed: 00:00:00.35
# Mc/sec: 893.75
//
Query:       MMETSP1137-20121227|3900_1  [L=329]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (329 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        77  (0.0187713); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.12s 00:00:00.37 Elapsed: 00:00:00.38
# Mc/sec: 1142.75
//
Query:       MMETSP1137-20121227|3901_1  [L=228]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (228 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       131  (0.0319356); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.15s 00:00:00.37 Elapsed: 00:00:00.38
# Mc/sec: 791.93
//
Query:       MMETSP1137-20121227|3902_1  [L=496]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.049   11.2   0.2       0.11   10.0   0.1    1.6  2  TIGR02527 dot_icm_IcmQ: Dot/Icm secretion system protein IcmQ


Domain annotation for each model (and alignments):
>> TIGR02527  dot_icm_IcmQ: Dot/Icm secretion system protein IcmQ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.0      0.35   1.4e+03      37      69 ..      71     104 ..      50     106 .. 0.69
   2 ?   10.0   0.1   2.7e-05      0.11      92     149 ..     327     382 ..     322     393 .. 0.84

  Alignments for each domain:
  == domain 1    score: -3.4 bits;  conditional E-value: 0.35
   TIGR02527  37 kalalkekldlk.aesqlatrialrenkvklyvs 69 
                 ++l++   ++l    sq+at   +  ++++ly+s
  MMETSP1137-20121227|3902_1  71 ERLTMDPDAQLSgLRSQIATSFQVPVQQQQLYLS 104
                 5666665555541468888888899999999987 PP

  == domain 2    score: 10.0 bits;  conditional E-value: 2.7e-05
   TIGR02527  92 mvsrPiyadeedikailktkesklseayvvvavdqsdilslsedkarkdklGkllltl 149
                 m +rP+ +de+di  +      + ++ +v++   q + +s+s+   r+ k  k    +
  MMETSP1137-20121227|3902_1 327 MKARPVLQDEKDIEGVATMEAYQVTDQCVAL--AQREAFSQSNTDPRVAKTAKDCCFI 382
                 889*************************986..5888999988888888877765555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (496 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        88  (0.0214529); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.16s 00:00:00.49 Elapsed: 00:00:00.74
# Mc/sec: 884.68
//
Query:       MMETSP1137-20121227|3903_1  [L=156]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (156 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       390  (0.0950756); expected 82.0 (0.02)
Passed bias filter:                      282  (0.068747); expected 82.0 (0.02)
Passed Vit filter:                        26  (0.00633837); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.18s 00:00:00.41 Elapsed: 00:00:00.40
# Mc/sec: 514.76
//
Query:       MMETSP1137-20121227|3904_1  [L=235]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.1e-08   30.5   0.1    4.8e-08   30.3   0.1    1.0  1  TIGR03520 GldE: gliding motility-associated protein GldE


Domain annotation for each model (and alignments):
>> TIGR03520  GldE: gliding motility-associated protein GldE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.3   0.1   1.2e-11   4.8e-08       4     121 ..     119     229 ..     116     235 .] 0.86

  Alignments for each domain:
  == domain 1    score: 30.3 bits;  conditional E-value: 1.2e-11
   TIGR03520   4 llllsalisgsevalfslssedleeeeeeeskkekivinllekpkkllatiliannliniaivllftslseelfgsletellrfllevvivtflillfGeilPkvyasrnslkfaklm 121
                 l+ll+a+++g+e a+ +l +  +++      ++  +  +l ++  k+l+t+l+   +  +    l+t ++ +lfg++   +      +v +t++ l+fGeilPk  a  n+   a+++
  MMETSP1137-20121227|3904_1 119 LFLLAAILAGAETAITTLWPWKVKQLA--AAETGSMFESLQKDVTKVLSTVLVGVTFCTVYGTALATDIAIHLFGEMGIGY-----ATVALTLVTLFFGEILPKSLAVANAEGVARAT 229
                 78999***************9998655..556677899999*********************************9987665.....67899999**********99988876666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (235 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       151  (0.0368113); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.21u 0.14s 00:00:00.35 Elapsed: 00:00:00.45
# Mc/sec: 689.28
//
Query:       MMETSP1137-20121227|3906_1  [L=161]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (161 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        95  (0.0231594); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.15s 00:00:00.32 Elapsed: 00:00:00.35
# Mc/sec: 607.15
//
Query:       MMETSP1137-20121227|3907_1  [L=301]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (301 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       118  (0.0287665); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.17s 00:00:00.43 Elapsed: 00:00:00.33
# Mc/sec: 1203.90
//
Query:       MMETSP1137-20121227|3908_1  [L=456]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (456 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        99  (0.0241346); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.15s 00:00:00.47 Elapsed: 00:00:00.40
# Mc/sec: 1504.68
//
Query:       MMETSP1137-20121227|3909_1  [L=269]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      7e-62  206.4   0.0    8.3e-62  206.1   0.0    1.0  1  TIGR01163 rpe: ribulose-phosphate 3-epimerase
    3.3e-06   24.7   0.4    8.8e-05   20.1   0.3    2.3  1  TIGR03128 RuMP_HxlA: 3-hexulose-6-phosphate synthase
    0.00018   18.7   0.1    0.00046   17.3   0.0    1.8  2  TIGR00693 thiE: thiamine-phosphate pyrophosphorylase


Domain annotation for each model (and alignments):
>> TIGR01163  rpe: ribulose-phosphate 3-epimerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  206.1   0.0   6.1e-65   8.3e-62       2     210 ..      43     252 ..      42     253 .. 0.99

  Alignments for each domain:
  == domain 1    score: 206.1 bits;  conditional E-value: 6.1e-65
   TIGR01163   2 iapsilsadfarlgeevkkveeaGadliHvDvmDghfvPnltlGpavlealrkl.tklpldvHlmvenvdkyiekfakagadlitvHveasehikrllklikelGvkagvvlnPatplealeevlekvdlvllmsvnPGFggqkFipevlekirevrklidekekeilievDGGvkeeniaevaeaGadvlvagsaifkaddykeaikkl 210
                 ++ps+  adf +lg ++++  + Ga+++H+ v Dg+ vP +++G +v+++lr    +   dv l v ++++ + +f+kagad+i+vH ea+ ++  +l++i e G  +gvvlnP tpl ++e+vl+ vd+v++m vnPG+gg k++++ l+ki+++r+++ +++++ +ievDGGv  +n+ e+ +aGa+ lvag  +f+a+d ++ai++l
  MMETSP1137-20121227|3909_1  43 VSPSVAKADFYKLGSDLQAAVDGGAEWLHFSVQDGRMVPKISFGAPVISSLRPHfPDTVFDVKLGVIEPEHRVGDFIKAGADIISVHPEATLQLPAVLNKIDEGGLASGVVLNPGTPLASVEHVLDLVDVVVVMLVNPGYGGPKYMKAALNKIHSLREMCLSRGTTPWIEVDGGVSAKNAPELIKAGANALVAGGSVFSAEDKAAAIAEL 252
                 89**************************************************9868999***************************************************************************************************************************************************9987 PP

>> TIGR03128  RuMP_HxlA: 3-hexulose-6-phosphate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.3   6.4e-08   8.8e-05     146     200 ..     195     250 ..      83     255 .. 0.68

  Alignments for each domain:
  == domain 1    score: 20.1 bits;  conditional E-value: 6.4e-08
   TIGR03128 146 ledLetll.kvvkevkvavAGGikldtikeviklgadvvivGsaitkAedpaeaak 200
                 +++L+++  +      + v GG+++++++e+ik+ga+ ++ G+++ +Aed+a a  
  MMETSP1137-20121227|3909_1 195 IHSLREMClSRGTTPWIEVDGGVSAKNAPELIKAGANALVAGGSVFSAEDKAAAIA 250
                 334443320333334469********************************998765 PP

>> TIGR00693  thiE: thiamine-phosphate pyrophosphorylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0      0.47   6.4e+02     165     180 ..     113     128 ..     104     133 .. 0.77
   2 !   17.3   0.0   3.4e-07   0.00046     132     196 ..     186     251 ..     151     252 .. 0.88

  Alignments for each domain:
  == domain 1    score: -2.7 bits;  conditional E-value: 0.47
   TIGR00693 165 enveevlkagvdgvav 180
                 ++v +++kag+d ++v
  MMETSP1137-20121227|3909_1 113 HRVGDFIKAGADIISV 128
                 5788899999999988 PP

  == domain 2    score: 17.3 bits;  conditional E-value: 3.4e-07
   TIGR00693 132 KkdkkavvglelleeiaakaleipvvaI.GGitlenveevlkagvdgvavvsaimaaadvaaaake 196
                 K +k+a+ +++ l+e++  + + p++ + GG++++n++e++kag++ ++    +++a+d aaa++e
  MMETSP1137-20121227|3909_1 186 KYMKAALNKIHSLREMCLSRGTTPWIEVdGGVSAKNAPELIKAGANALVAGGSVFSAEDKAAAIAE 251
                 6667788899*******9999****9888******************************9999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (269 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        87  (0.0212092); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.25u 0.12s 00:00:00.37 Elapsed: 00:00:00.37
# Mc/sec: 959.60
//
Query:       MMETSP1137-20121227|3910_1  [L=473]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (473 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       175  (0.0426621); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.15s 00:00:00.47 Elapsed: 00:00:00.41
# Mc/sec: 1522.70
//
Query:       MMETSP1137-20121227|3911_1  [L=33]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (33 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        28  (0.00682594); expected 82.0 (0.02)
Passed bias filter:                       28  (0.00682594); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:01.39
# Mc/sec: 31.34
//
Query:       MMETSP1137-20121227|3912_1  [L=42]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.04   11.1   0.1      0.042   11.0   0.1    1.0  1  TIGR03841 F420_Rv3093c: probable F420-dependent oxidoreductase, Rv3093c family


Domain annotation for each model (and alignments):
>> TIGR03841  F420_Rv3093c: probable F420-dependent oxidoreductase, Rv3093c family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.1     1e-05     0.042      28      57 ..      13      42 .]       8      42 .] 0.93

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 1e-05
   TIGR03841 28 WvgEvagyDaFalatavaaaapelrLtvgp 57
                Wv+ va+ D+Fala+  +   +e  L+ gp
  MMETSP1137-20121227|3912_1 13 WVSGVAASDTFALAVIPGRGCDEAILGAGP 42
                ********************9999999886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (42 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        48  (0.0117016); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.25
# Mc/sec: 221.74
//
Query:       MMETSP1137-20121227|3913_1  [L=259]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (259 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        88  (0.0214529); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.13s 00:00:00.34 Elapsed: 00:00:00.36
# Mc/sec: 949.59
//
Query:       MMETSP1137-20121227|3914_1  [L=514]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0017   16.7   0.1     0.0034   15.7   0.1    1.5  1  TIGR02196 GlrX_YruB: glutaredoxin-like protein, YruB-family
     0.0036   14.9   0.0     0.0055   14.3   0.0    1.2  1  TIGR00862 O-ClC: intracellular chloride channel protein
     0.0081   14.2   0.0      0.016   13.3   0.0    1.5  1  TIGR02181 GRX_bact: glutaredoxin 3
  ------ inclusion threshold ------
      0.015   13.6   0.1      0.031   12.6   0.0    1.5  1  TIGR02200 GlrX_actino: glutaredoxin-like protein
      0.038   12.1   0.0      0.082   11.0   0.0    1.5  1  TIGR02180 GRX_euk: glutaredoxin


Domain annotation for each model (and alignments):
>> TIGR02196  GlrX_YruB: glutaredoxin-like protein, YruB-family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.1   4.1e-06    0.0034       2      32 ..     120     152 ..     119     157 .. 0.85

  Alignments for each domain:
  == domain 1    score: 15.7 bits;  conditional E-value: 4.1e-06
   TIGR02196   2 vkvY..ttpwCppCkkakeyLkskgiafeeidv 32 
                 v++Y  t +wCp+C+k+   L++k i+f+   +
  MMETSP1137-20121227|3914_1 120 VTLYrdTAAWCPYCQKVWLLLEEKQIPFRVKKI 152
                 778866789*******************97766 PP

>> TIGR00862  O-ClC: intracellular chloride channel protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.0   6.7e-06    0.0055      16      82 ..     127     196 ..     108     213 .. 0.85

  Alignments for each domain:
  == domain 1    score: 14.3 bits;  conditional E-value: 6.7e-06
   TIGR00862  16 igncpfsqrlfmilwlkgvvfnvttvdlkr...kpeelknlapgtkppflvynkevktdvnkieefleev 82 
                    cp++q+++++l  k + f v  ++++    kp ++ + +pg+ +p l  + +  td   i  +l+ +
  MMETSP1137-20121227|3914_1 127 AAWCPYCQKVWLLLEEKQIPFRVKKINMRSygdKPPSFLQRVPGGLLPALELDDQFYTDSLPIMALLDGT 196
                 567************************985344888899999*****************99998888765 PP

>> TIGR02181  GRX_bact: glutaredoxin 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   0.0   1.9e-05     0.016       2      33 ..     121     154 ..     120     171 .. 0.79

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 1.9e-05
   TIGR02181   2 viY..tkksCpycsrAkalLeekgvefeeievdk 33 
                 ++Y  t + Cpyc++   lLeek++ f+  ++++
  MMETSP1137-20121227|3914_1 121 TLYrdTAAWCPYCQKVWLLLEEKQIPFRVKKINM 154
                 566447789****************887766665 PP

>> TIGR02200  GlrX_actino: glutaredoxin-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   3.8e-05     0.031       3      33 ..     121     153 ..     119     162 .. 0.82

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 3.8e-05
   TIGR02200   3 tvY..atswCgyCaslkrtLdkdgaeYevvdie 33 
                 t+Y  ++ wC+yC+++   L+++ +++ v  i+
  MMETSP1137-20121227|3914_1 121 TLYrdTAAWCPYCQKVWLLLEEKQIPFRVKKIN 153
                 66633578************9999999988876 PP

>> TIGR02180  GRX_euk: glutaredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   9.9e-05     0.082       7      41 ..     128     160 ..     120     171 .. 0.77

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 9.9e-05
   TIGR02180   7 syCpYckkakelLkklkvkkalevveldklengse 41 
                  +CpYc+k+  lL+++++   + v  ++  + g++
  MMETSP1137-20121227|3914_1 128 AWCPYCQKVWLLLEEKQIP--FRVKKINMRSYGDK 160
                 58************99999..77777777666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (514 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        76  (0.0185275); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.38u 0.16s 00:00:00.54 Elapsed: 00:00:00.42
# Mc/sec: 1615.30
//
Query:       MMETSP1137-20121227|3915_1  [L=381]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.14    7.5  10.0       0.18    7.1   7.0    1.0  1  TIGR01369 CPSaseII_lrg: carbamoyl-phosphate synthase, large subunit
       0.31    7.1  13.7       0.37    6.8   9.5    1.0  1  TIGR00934 2a38euk: potassium uptake protein, Trk family
        1.1    6.3  23.5        1.7    5.7  16.3    1.2  1  TIGR03752 conj_TIGR03752: integrating conjugative element protein, PFL_4705 family
        7.2    2.6  20.5          9    2.3  14.2    1.1  1  TIGR04154 archaeo_STT3: oligosaccharyl transferase, archaeosortase system-associated


Domain annotation for each model (and alignments):
>> TIGR01369  CPSaseII_lrg: carbamoyl-phosphate synthase, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   7.0   0.00018      0.18     879    1005 ..      52     176 ..      30     186 .. 0.67

  Alignments for each domain:
  == domain 1    score: 7.1 bits;  conditional E-value: 0.00018
   TIGR01369  879 ekksklvavkaavfsfsklagvdvvlgpemkstGEvmgigrdleeallkallaskakikkkgsvllsvkdkdkeellelakklaekglkvyategtakvleeagikaevvlkvseeaekilellkee 1005
                  +++++  +++ +  ++s   ++++  g+ m +  E m+ + ++++   + +++++++ +++ s + +++ ++++++ + +++ a++    + ++  ++ ++++++++++++++++++++++++ + +
  MMETSP1137-20121227|3915_1   52 QMQPHCGSMQPPCSPMSSCMQMQPAHGVPMPAHAEHMSPQMQQQQQAQQQQQMQQQMQQQQVSQMHQQQMHQQQQAAQ-MQQAAQMQQAAMMQQRQQQHIHQQQMQQQQMQQQMQRQQQMQQM-QMQ 176 
                  556666777778888999999*****************9999988887777776655555555555554444444444.44444444444445555666777777777777777666555433.333 PP

>> TIGR00934  2a38euk: potassium uptake protein, Trk family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   9.5   0.00036      0.37     295     378 ..      95     177 ..      48     217 .. 0.47

  Alignments for each domain:
  == domain 1    score: 6.8 bits;  conditional E-value: 0.00036
   TIGR00934 295 sesrriqekikrrlstssieknsqqnltrlaktksfddskavrlersktidraeasdleeldra.kdfqkmveknvkaakrkkkn 378
                  + ++ q+++++++ +++++++ qq+++++++   ++  +a++++++ ++++ +++ + + + + +++q+ ++++ + ++++ ++
  MMETSP1137-20121227|3915_1  95 QQQAQQQQQMQQQMQQQQVSQMHQQQMHQQQQAAQMQ--QAAQMQQAAMMQQRQQQHIHQQQMQqQQMQQQMQRQQQMQQMQMQQ 177
                 1111112333333333333333333333333333333..2222222222222221111111111011111111111112222222 PP

>> TIGR03752  conj_TIGR03752: integrating conjugative element protein, PFL_4705 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7  16.3    0.0016       1.7      91     183 ..      96     185 ..      75     224 .. 0.47

  Alignments for each domain:
  == domain 1    score: 5.7 bits;  conditional E-value: 0.0016
   TIGR03752  91 rlkkreesvderiqq.alea.ekkelkkekeqlkeeqakleelldelqkkledvaaekesseedlpvglGleegdkaqseskdevvwvepsdaka 183
                 +  ++++++++++qq ++++ +++++++++++++ +qa   ++ + +q++ ++ +++++ +++++      ++++++q+ ++ ++++++psd++ 
  MMETSP1137-20121227|3915_1  96 QQAQQQQQMQQQMQQqQVSQmHQQQMHQQQQAAQMQQAAQMQQAAMMQQRQQQHIHQQQMQQQQMQ-----QQMQRQQQMQQMQMQQMKPSDQQG 185
                 112222223332222022221222222222222222222222222222333333333333333333.....333333333344555555555543 PP

>> TIGR04154  archaeo_STT3: oligosaccharyl transferase, archaeosortase system-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3  14.2    0.0088         9     621     702 ..      90     174 ..      70     219 .. 0.50

  Alignments for each domain:
  == domain 1    score: 2.3 bits;  conditional E-value: 0.0088
   TIGR04154 621 veeqeetgsqtvsvnkqryyetmvarLhlfdGsaaeps...allveveeeeaseqslkvetkeeeenaseaeaaaeadnaasaae 702
                  + q+++++q+++  +q+  + +v+++h+ +  +++++   + +++++++++++q ++++ ++++++ ++ +++++ ++++++ +
  MMETSP1137-20121227|3915_1  90 PQMQQQQQAQQQQQMQQQMQQQQVSQMHQQQMHQQQQAaqmQQAAQMQQAAMMQQRQQQHIHQQQMQQQQMQQQMQRQQQMQQMQ 174
                 2234555555555555555566666666665543333321111222222222222222222222222222222222222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (381 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                      1504  (0.36665); expected 82.0 (0.02)
Passed bias filter:                      402  (0.098001); expected 82.0 (0.02)
Passed Vit filter:                       151  (0.0368113); expected 4.1 (0.001)
Passed Fwd filter:                        35  (0.00853242); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.93u 0.18s 00:00:01.11 Elapsed: 00:00:01.05
# Mc/sec: 478.93
//
Query:       MMETSP1137-20121227|3916_1  [L=295]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (295 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       167  (0.0407118); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.12s 00:00:00.36 Elapsed: 00:00:00.36
# Mc/sec: 1081.58
//
Query:       MMETSP1137-20121227|3917_1  [L=325]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (325 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       100  (0.0243784); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.15s 00:00:00.41 Elapsed: 00:00:00.78
# Mc/sec: 549.95
//
Query:       MMETSP1137-20121227|3918_1  [L=1175]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1175 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       132  (0.0321794); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.65u 0.17s 00:00:00.82 Elapsed: 00:00:00.57
# Mc/sec: 2673.92
//
Query:       MMETSP1137-20121227|3919_1  [L=855]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.9e-14   50.7   0.0      6e-14   49.7   0.0    1.4  1  TIGR02857 CydD: thiol reductant ABC exporter, CydD subunit
    5.2e-12   43.6   0.0    8.9e-08   29.7   0.0    2.2  2  TIGR03864 PQQ_ABC_ATP: ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system
    1.5e-10   39.0   0.0    2.1e-06   25.4   0.0    2.4  2  TIGR01189 ccmA: heme ABC exporter, ATP-binding protein CcmA
    1.7e-09   35.2   0.0    4.8e-05   20.7   0.0    2.2  2  TIGR00972 3a0107s01c2: phosphate ABC transporter, ATP-binding protein
    1.7e-09   35.1   0.0    5.4e-07   26.9   0.0    2.1  2  TIGR01186 proV: glycine betaine/L-proline transport ATP binding subunit
    2.9e-09   34.7   0.1    1.3e-06   26.0   0.0    2.3  2  TIGR01277 thiQ: thiamine ABC transporter, ATP-binding protein
    1.3e-08   31.4   0.0    1.7e-06   24.4   0.0    2.9  3  TIGR03796 NHLM_micro_ABC1: NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein
    2.1e-08   30.8   0.0    3.9e-07   26.6   0.0    2.4  2  TIGR01846 type_I_sec_HlyB: type I secretion system ATPase
    2.7e-08   31.4   0.0    2.8e-05   21.5   0.0    2.2  2  TIGR02315 ABC_phnC: phosphonate ABC transporter, ATP-binding protein
    3.3e-08   30.3   0.0    0.00038   16.9   0.0    2.3  2  TIGR03797 NHLM_micro_ABC2: NHLM bacteriocin system ABC transporter, ATP-binding protein
    6.1e-08   30.3   0.1    4.9e-06   24.1   0.0    2.2  2  TIGR00968 3a0106s01: sulfate ABC transporter, ATP-binding protein
    6.5e-08   29.1   0.0    6.7e-05   19.2   0.0    2.1  2  TIGR03375 type_I_sec_LssB: type I secretion system ATPase
    1.8e-07   28.4   0.3    3.2e-06   24.2   0.2    2.3  1  TIGR03258 PhnT: 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT
    1.8e-07   28.5   0.0    0.00042   17.5   0.0    2.1  2  TIGR01188 drrA: daunorubicin resistance ABC transporter, ATP-binding protein
    3.5e-07   27.6   0.0      0.011   12.8   0.0    2.3  2  TIGR02142 modC_ABC: molybdate ABC transporter, ATP-binding protein
    4.1e-07   27.7   0.0     0.0009   16.7   0.0    2.2  2  TIGR01184 ntrCD: nitrate ABC transporter, ATP-binding proteins C and D
    4.2e-07   26.8   0.0    3.2e-06   23.9   0.0    2.0  1  TIGR02204 MsbA_rel: ABC transporter, permease/ATP-binding protein
    1.3e-06   25.9   0.0      0.011   13.1   0.0    2.2  2  TIGR03608 L_ocin_972_ABC: putative bacteriocin export ABC transporter, lactococcin 972 group
    1.4e-06   25.9   0.0     0.0021   15.5   0.0    2.3  2  TIGR02982 heterocyst_DevA: ABC exporter ATP-binding subunit, DevA family
    2.1e-06   25.0   0.0    0.00011   19.4   0.0    2.2  2  TIGR03005 ectoine_ehuA: ectoine/hydroxyectoine ABC transporter, ATP-binding protein EhuA
    2.2e-06   25.0   0.2    0.00027   18.1   0.0    2.2  2  TIGR03265 PhnT2: putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein
    2.7e-06   24.7   0.3    5.5e-06   23.6   0.2    1.5  1  TIGR03873 F420-0_ABC_ATP: proposed F420-0 ABC transporter, ATP-binding protein
    2.7e-06   24.8   0.0      0.028   11.7   0.0    2.3  2  TIGR01166 cbiO: cobalt ABC transporter, ATP-binding protein
    3.2e-06   24.7   0.0    6.9e-06   23.5   0.0    1.4  1  TIGR02769 nickel_nikE: nickel import ATP-binding protein NikE
    4.1e-06   23.9   0.3    0.00013   19.0   0.0    2.1  2  TIGR01187 potA: polyamine ABC transporter, ATP-binding protein
    8.1e-06   22.9   0.1    0.00025   18.0   0.0    2.2  2  TIGR02314 ABC_MetN: D-methionine ABC transporter, ATP-binding protein
    8.9e-06   23.4   0.1    0.00063   17.3   0.0    2.4  2  TIGR03771 anch_rpt_ABC: anchored repeat-type ABC transporter, ATP-binding subunit
    1.1e-05   23.0   0.0      0.062   10.8   0.0    2.3  2  TIGR02673 FtsE: cell division ATP-binding protein FtsE
    3.1e-05   21.4   0.0      0.016   12.5   0.0    2.3  2  TIGR02324 CP_lyasePhnL: phosphonate C-P lyase system protein PhnL
    3.2e-05   21.3   0.0      0.019   12.2   0.0    2.3  2  TIGR03410 urea_trans_UrtE: urea ABC transporter, ATP-binding protein UrtE
    4.3e-05   20.0   3.7    0.00023   17.6   0.0    2.4  2  TIGR02203 MsbA_lipidA: lipid A export permease/ATP-binding protein MsbA
    5.7e-05   19.7   0.0      0.021   11.2   0.0    2.1  2  TIGR03719 ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family
      8e-05   20.0   0.0     0.0013   16.0   0.0    2.1  1  TIGR01978 sufC: FeS assembly ATPase SufC
    0.00023   18.6   0.0       0.14    9.5   0.0    2.2  2  TIGR02211 LolD_lipo_ex: lipoprotein releasing system, ATP-binding protein
    0.00035   17.5   0.0      0.012   12.4   0.0    2.3  2  TIGR01288 nodI: nodulation ABC transporter NodI
    0.00087   15.7   0.0      0.018   11.4   0.0    2.1  2  TIGR01842 type_I_sec_PrtD: type I secretion system ATPase
     0.0012   15.8   0.0     0.0021   14.9   0.0    1.3  1  TIGR03465 HpnD: squalene synthase HpnD
     0.0013   14.9   0.2      0.016   11.3   0.0    2.1  2  TIGR00958 3a01208: antigen peptide transporter 2
     0.0014   16.2   0.0       0.96    7.0   0.0    2.4  2  TIGR00960 3a0501s02: type II secretory pathway family protein
     0.0016   15.3   0.1     0.0043   13.9   0.0    1.6  2  TIGR03415 ABC_choXWV_ATP: choline ABC transporter, ATP-binding protein
     0.0023   14.3   0.0       0.11    8.7   0.0    2.1  2  TIGR02633 xylG: D-xylose ABC transporter, ATP-binding protein
     0.0075   12.7   0.1        1.2    5.4   0.0    2.1  2  TIGR00955 3a01204: pigment precursor permease
  ------ inclusion threshold ------
      0.014   11.8   0.0       0.15    8.4   0.0    2.2  2  TIGR01194 cyc_pep_trnsptr: cyclic peptide transporter
      0.015   12.8   0.0      0.076   10.5   0.0    1.9  2  TIGR03740 galliderm_ABC: lantibiotic protection ABC transporter, ATP-binding subunit
      0.019   10.2   0.1       0.22    6.6   0.0    1.9  2  TIGR00957 MRP_assoc_pro: multi drug resistance-associated protein (MRP)
       0.02   11.3   0.0        1.2    5.4   0.0    2.1  2  TIGR03269 met_CoM_red_A2: methyl coenzyme M reductase system, component A2
      0.021   12.3   0.0       0.17    9.4   0.0    2.1  1  TIGR03411 urea_trans_UrtD: urea ABC transporter, ATP-binding protein UrtD
      0.022   10.5   0.0      0.033    9.9   0.0    1.1  1  TIGR00618 sbcc: exonuclease SbcC
      0.036   12.2   0.0      0.078   11.1   0.0    1.5  1  TIGR01715 phage_lam_T: phage tail assembly protein T
      0.037   10.0   0.0       0.06    9.3   0.0    1.2  1  TIGR00929 VirB4_CagE: type IV secretion/conjugal transfer ATPase, VirB4 family


Domain annotation for each model (and alignments):
>> TIGR02857  CydD: thiol reductant ABC exporter, CydD subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.7   0.0   7.3e-16     6e-14     336     524 ..     591     791 ..     567     795 .. 0.77

  Alignments for each domain:
  == domain 1    score: 49.7 bits;  conditional E-value: 7.3e-16
   TIGR02857 336 palkevsltvepgelvalvGaSGaGKstllklllgfvepteGailv.....ngaelaeldadswrkq.iawvpQkPllfegtvaenirlarkdaseaevkealeragldelvkalp....qgleteiGergagLSgGqrqRlaLAr.allrda..pllllDEPtahLDaeteaevlealrelaegrtvllvaHrlalaelad 524
                 + ++   l+++p+ + a++G+ G+GKstll++ll  ++ +     v      + +l + da+   +   a    +P  +  ++ +  + ++ +a++ ++++a  + +l ++ ++ p    + + +  ++  a LSgGqr +  L r ++lr++  p+lllDE  a+LD+ ++  v++++r+ + +   l+  H +   ++ad
  MMETSP1137-20121227|3919_1 591 ASVNIDALELPPRGIFAIAGKNGCGKSTLLSILLACARSAPPPHGVdfatpPSIALPSSDAAIVTHAtTALSTRAPSATGSALVAREAQSEGGAHRLAMRAARLASEL-HFSAESPdaiaAAWMRTHDDYCASLSGGQRSKFELLRsVFLRPScpPVLLLDEAFAALDPLSKTLVMRKVRAHCAASLALVTYHADPDDARAD 791
                 3444456899***********************988765554444444567778888888886555426677777888877777777777888888777666555555.55555551111566678899**************999578999899**************************************988777776 PP

>> TIGR03864  PQQ_ABC_ATP: ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.4   0.0   0.00041     0.033      21      48 ..     597     624 ..     579     637 .. 0.77
   2 !   29.7   0.0   1.1e-09   8.9e-08     127     182 ..     717     775 ..     706     796 .. 0.85

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 0.00041
   TIGR03864  21 sltvakgefvaLLGpnGaGkstLfsllt 48 
                 +l++++  + a+ G nG GkstL+s+l 
  MMETSP1137-20121227|3919_1 597 ALELPPRGIFAIAGKNGCGKSTLLSILL 624
                 46777777999**************985 PP

  == domain 2    score: 29.7 bits;  conditional E-value: 1.1e-09
   TIGR03864 127 eekvreLnGGhrrrveiarallhePk...lLLlDeatvGLDiesraalveevrelvree 182
                 ++   +L+GG+r + e+ r++  +P+   +LLlDea + LD+ s++ ++++vr+ ++++
  MMETSP1137-20121227|3919_1 717 DDYCASLSGGQRSKFELLRSVFLRPScppVLLLDEAFAALDPLSKTLVMRKVRAHCAAS 775
                 566789***************999754449************************99654 PP

>> TIGR01189  ccmA: heme ABC exporter, ATP-binding protein CcmA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.8   0.0   0.00073      0.06      21      47 ..     598     624 ..     582     633 .. 0.79
   2 !   25.4   0.0   2.6e-08   2.1e-06     113     187 ..     709     784 ..     693     792 .. 0.78

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 0.00073
   TIGR01189  21 felaaGealvveGpnGiGKttLLRila 47 
                 +el +  + ++ G+nG GK+tLL il 
  MMETSP1137-20121227|3919_1 598 LELPPRGIFAIAGKNGCGKSTLLSILL 624
                 5566677899*************9985 PP

  == domain 2    score: 25.4 bits;  conditional E-value: 2.6e-08
   TIGR01189 113 ekvgLsgledlpvaqLsAGqkrRlalarLll...skaplWiLDEPttalDkegvellaellaaHlargGivllathqd 187
                 +++ ++ + d  +a+Ls Gq+ ++ l r +    s  p+ +LDE ++alD  + +l++++++aH+a   ++l++ h d
  MMETSP1137-20121227|3919_1 709 AAAWMRTH-DDYCASLSGGQRSKFELLRSVFlrpSCPPVLLLDEAFAALDPLSKTLVMRKVRAHCAAS-LALVTYHAD 784
                 55545444.556899***********995441225689***************************975.677777766 PP

>> TIGR00972  3a0107s01c2: phosphate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.2   0.0   0.00022     0.018      11      46 ..     586     622 ..     580     628 .. 0.79
   2 !   20.7   0.0   5.8e-07   4.8e-05     139     184 ..     717     765 ..     695     791 .. 0.82

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 0.00022
   TIGR00972  11 ygekealkdvn.leikknkvtaliGpsGcGkstllrs 46 
                 y   +a  +++ le++ + + a+ G+ GcGkstll  
  MMETSP1137-20121227|3919_1 586 YERGSASVNIDaLELPPRGIFAIAGKNGCGKSTLLSI 622
                 5555555555438999******************976 PP

  == domain 2    score: 20.7 bits;  conditional E-value: 5.8e-07
   TIGR00972 139 kksalsLsGGqqqrlciaralavePe...vlLlDePtsaLDpiatekie 184
                 +++  sLsGGq+ ++ + r++ ++P    vlLlDe  +aLDp + + + 
  MMETSP1137-20121227|3919_1 717 DDYCASLSGGQRSKFELLRSVFLRPScppVLLLDEAFAALDPLSKTLVM 765
                 57889*****************99754449************9876654 PP

>> TIGR01186  proV: glycine betaine/L-proline transport ATP binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   0.0     0.015       1.3       7      39 ..     591     623 ..     587     633 .. 0.84
   2 !   26.9   0.0   6.6e-09   5.4e-07     123     167 ..     716     763 ..     709     789 .. 0.83

  Alignments for each domain:
  == domain 1    score: 5.9 bits;  conditional E-value: 0.015
   TIGR01186   7 lgvndvdleieeGeiiviiGlsGsGkstlvrll 39 
                  +vn   le+    i+ i G  G+Gkstl+ +l
  MMETSP1137-20121227|3919_1 591 ASVNIDALELPPRGIFAIAGKNGCGKSTLLSIL 623
                 56666778888888***************9876 PP

  == domain 2    score: 26.9 bits;  conditional E-value: 6.6e-09
   TIGR01186 123 edryPdelsGGmqqrvGlaralaae...PdlllmdeafsaldPlirde 167
                 +d y   lsGG++ +  l+r++      P++ll+deaf+aldPl ++ 
  MMETSP1137-20121227|3919_1 716 HDDYCASLSGGQRSKFELLRSVFLRpscPPVLLLDEAFAALDPLSKTL 763
                 5889*****************976522279**************9875 PP

>> TIGR01277  thiQ: thiamine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   0.0     0.019       1.5      26      44 ..     605     623 ..     592     633 .. 0.86
   2 !   26.0   0.0   1.6e-08   1.3e-06     127     198 ..     721     794 ..     706     802 .. 0.79

  Alignments for each domain:
  == domain 1    score: 6.2 bits;  conditional E-value: 0.019
   TIGR01277  26 rvailGesGaGkstllnli 44 
                 + ai G+ G Gkstll+++
  MMETSP1137-20121227|3919_1 605 IFAIAGKNGCGKSTLLSIL 623
                 679*************976 PP

  == domain 2    score: 26.0 bits;  conditional E-value: 1.6e-08
   TIGR01277 127 eelsGGqrqrvalarc.lvrek..pillldepfsaldpklreemlalvkkladekkltlllvthslsdaaaiasq 198
                  +lsGGqr +  l r  ++r+   p+lllde f+aldp+ ++ ++  v+  +    l+l+    +++da+a a++
  MMETSP1137-20121227|3919_1 721 ASLSGGQRSKFELLRSvFLRPScpPVLLLDEAFAALDPLSKTLVMRKVRAHCAA-SLALVTYHADPDDARADADE 794
                 68**********9995378986559**************999999989888864.34444444456777777765 PP

>> TIGR03796  NHLM_micro_ABC1: NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.0      0.24        20     240     287 ..     406     453 ..     381     468 .. 0.88
   2 ?    1.8   0.0      0.13        11     500     524 ..     598     622 ..     510     629 .. 0.91
   3 !   24.4   0.0     2e-08   1.7e-06     613     663 ..     720     773 ..     706     782 .. 0.86

  Alignments for each domain:
  == domain 1    score: 1.0 bits;  conditional E-value: 0.24
   TIGR03796 240 lPveffaqRaageiasRvqlndkvaellsgqlattvldlvlvvfyalv 287
                 + v+ f+ +aag ++ Rv+  ++v +  +g la+++ d ++   +a +
  MMETSP1137-20121227|3919_1 406 VAVDVFKAKAAGALSGRVEEYNRVDAQNAGLLASAAADGFTTAHWAQL 453
                 567899*****************************9999888777766 PP

  == domain 2    score: 1.8 bits;  conditional E-value: 0.13
   TIGR03796 500 lslkpGqrvAlvGgsGsGkstiakl 524
                 l+l p    A+ G  G+Gkst+  +
  MMETSP1137-20121227|3919_1 598 LELPPRGIFAIAGKNGCGKSTLLSI 622
                 778888889************8655 PP

  == domain 3    score: 24.4 bits;  conditional E-value: 2e-08
   TIGR03796 613 ganlsGGqrqRleiARaLvknPs...iLilDEatsaLDaetEkaidenlrrRgc 663
                  a lsGGqr ++e+ R++  +Ps   +L+lDEa +aLD+     +++++r    
  MMETSP1137-20121227|3919_1 720 CASLSGGQRSKFELLRSVFLRPScppVLLLDEAFAALDPLSKTLVMRKVRAHCA 773
                 5789**************999876669*********************997654 PP

>> TIGR01846  type_I_sec_HlyB: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0       3.6     3e+02     288     326 ..     405     443 ..     393     459 .. 0.73
   2 !   26.6   0.0   4.7e-09   3.9e-07     465     643 ..     586     775 ..     579     783 .. 0.65

  Alignments for each domain:
  == domain 1    score: -2.8 bits;  conditional E-value: 3.6
   TIGR01846 288 lviylllsvivspilrkrvedkfeksaeaqsflvesvtg 326
                 lv+  ++   +++ l  rve+    +a++  +l  + + 
  MMETSP1137-20121227|3919_1 405 LVAVDVFKAKAAGALSGRVEEYNRVDAQNAGLLASAAAD 443
                 33344566678999******99999****9999887654 PP

  == domain 2    score: 26.6 bits;  conditional E-value: 4.7e-09
   TIGR01846 465 ykedspevlsnlsldikaGeviGivGpsGsGkstltkll...qrlyvPekGrvlvdgvdlal..adPawlrrqvgvvlqenvlfsrs.irdnialakPaiseekviaaaklaGahdfiselkqG....yetevgekGaalsGGqrqrialaralvan...Prilildeatsaldyeseavimrnlreickgr 643
                 y++ s++v  + +l++++  +  i G+ G+Gkstl  +l    r   P +G  +     +al   d a +    + +   +    +s +    a+++ +++    + aa+la   +f  e ++     +  + ++  a+lsGGqr +  l r++      P +l+ldea +ald  s +++mr++r+ c++ 
  MMETSP1137-20121227|3919_1 586 YERGSASVNID-ALELPPRGIFAIAGKNGCGKSTLLSILlacARSAPPPHGVDFATPPSIALpsSDAAIVTHATTALSTRAPSATGSaLVAREAQSEGGAH-RLAMRAARLASELHFSAESPDAiaaaWMRTHDDYCASLSGGQRSKFELLRSVFLRpscPPVLLLDEAFAALDPLSKTLVMRKVRAHCAAS 775
                 55555555333.47777778888889999999988766523346667777755554444443114555444444443333333333312333344444433.3456799********99988751111566778999****************9866112679***********************999865 PP

>> TIGR02315  ABC_phnC: phosphonate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.6   0.0    0.0058      0.48       9      48 ..     584     623 ..     580     630 .. 0.83
   2 !   21.5   0.0   3.4e-07   2.8e-05     140     193 ..     717     773 ..     710     783 .. 0.84

  Alignments for each domain:
  == domain 1    score: 7.6 bits;  conditional E-value: 0.0058
   TIGR02315   9 kvypngkqalknvnleikkGelvaviGlsGaGkstllrsi 48 
                   y+ g+++++   le+ +  + a+ G+ G Gkstll  +
  MMETSP1137-20121227|3919_1 584 AAYERGSASVNIDALELPPRGIFAIAGKNGCGKSTLLSIL 623
                 567777777777778999999***************9765 PP

  == domain 2    score: 21.5 bits;  conditional E-value: 3.4e-07
   TIGR02315 140 akradqLsGGqqqRvaiaRalaqqpk...lilaDEPiasLDpksskqvmdllkrink 193
                 +  + +LsGGq+ +  + R++  +p+   ++l DE  a+LDp s + vm++++  + 
  MMETSP1137-20121227|3919_1 717 DDYCASLSGGQRSKFELLRSVFLRPScppVLLLDEAFAALDPLSKTLVMRKVRAHCA 773
                 566899**************9977643339*********************998765 PP

>> TIGR03797  NHLM_micro_ABC2: NHLM bacteriocin system ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.0   0.0   0.00028     0.023     481     501 ..     605     625 ..     581     632 .. 0.82
   2 !   16.9   0.0   4.6e-06   0.00038     586     631 ..     720     768 ..     705     778 .. 0.87

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 0.00028
   TIGR03797 481 fvaivGaSGsGKStllrlLLg 501
                   ai G+ G+GKStll +LL+
  MMETSP1137-20121227|3919_1 605 IFAIAGKNGCGKSTLLSILLA 625
                 569****************97 PP

  == domain 2    score: 16.9 bits;  conditional E-value: 4.6e-06
   TIGR03797 586 ggtlSGGQrQRlliAralvrkPr...illfDEATSALDNrtQaiVsesl 631
                  ++lSGGQr +  + r++  +P    +ll+DEA  ALD  ++++V+  +
  MMETSP1137-20121227|3919_1 720 CASLSGGQRSKFELLRSVFLRPScppVLLLDEAFAALDPLSKTLVMRKV 768
                 678****************99754449************9999999766 PP

>> TIGR00968  3a0106s01: sulfate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   0.0     0.092       7.6      20      46 ..     597     623 ..     582     631 .. 0.80
   2 !   24.1   0.0     6e-08   4.9e-06     124     170 ..     716     764 ..     710     799 .. 0.71

  Alignments for each domain:
  == domain 1    score: 3.8 bits;  conditional E-value: 0.092
   TIGR00968  20 dlevktGslvallGpsGsGkstllrvi 46 
                  le++   + a+ G  G Gkstll ++
  MMETSP1137-20121227|3919_1 597 ALELPPRGIFAIAGKNGCGKSTLLSIL 623
                 4777888899**************987 PP

  == domain 2    score: 24.1 bits;  conditional E-value: 6e-08
   TIGR00968 124 gdrypsqlsGGqrqrvalaralavepq...vllldepfgaldakvrkelr 170
                  d y + lsGGqr +  l r++ + p    vlllde f+ald    k l 
  MMETSP1137-20121227|3919_1 716 HDDYCASLSGGQRSKFELLRSVFLRPScppVLLLDEAFAALDPL-SKTLV 764
                 689*******************998654449***********74.44443 PP

>> TIGR03375  type_I_sec_LssB: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.8   0.0    0.0022      0.18     479     516 ..     589     626 ..     580     632 .. 0.79
   2 !   19.2   0.0   8.2e-07   6.7e-05     601     659 ..     720     781 ..     684     784 .. 0.78

  Alignments for each domain:
  == domain 1    score: 7.8 bits;  conditional E-value: 0.0022
   TIGR03375 479 ekaaLknvslkikpGekvaiiGriGsGKstllklllgl 516
                  +a+++   l++ p    ai G++G+GKstll +ll  
  MMETSP1137-20121227|3919_1 589 GSASVNIDALELPPRGIFAIAGKNGCGKSTLLSILLAC 626
                 5566677777777777789*************999876 PP

  == domain 2    score: 19.2 bits;  conditional E-value: 8.2e-07
   TIGR03375 601 GesLSgGQrqavalaRallkd...ppillLDEPtsalDnsseekllerLkelladkTlvlvt 659
                  +sLSgGQr    l R +      pp+llLDE  +alD  s + +++++++ +a    +++ 
  MMETSP1137-20121227|3919_1 720 CASLSGGQRSKFELLRSVFLRpscPPVLLLDEAFAALDPLSKTLVMRKVRAHCAASLALVTY 781
                 579*************9987623369**********************99988866555544 PP

>> TIGR03258  PhnT: 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.2   0.2   3.9e-08   3.2e-06      24     209 ..     593     794 ..     573     801 .. 0.75

  Alignments for each domain:
  == domain 1    score: 24.2 bits;  conditional E-value: 3.9e-08
   TIGR03258  24 lddlsleieaGellallGksGsGkttllravaGfvkadG..........Grllvadrd...lthlppykrnlallvqnyalfphlkveenvaf..Glrarkqska.liaervadalklvqlsdaaarlpaqlsGGqqqrvalaralvvrpd...vllldeplsaldaqlrasvveelkalhrelpeltvlyvthdrdealvladk 209
                 ++  +le+ +  ++a+ Gk G+Gk+tll ++    +++             +++   d   +th+       a      al       e  a    +ra + ++    +    da+    +      + a lsGGq+ +  l r++ +rp    vlllde ++ald   ++ v+ +++a h     l+++    d d+a + ad 
  MMETSP1137-20121227|3919_1 593 VNIDALELPPRGIFAIAGKNGCGKSTLLSILLACARSAPpphgvdfatpPSIALPSSDaaiVTHATTALSTRAPSATGSALVAREAQSEGGAHrlAMRAARLASElHFSAESPDAIAAAWMRT-HDDYCASLSGGQRSKFELLRSVFLRPScppVLLLDEAFAALDPLSKTLVMRKVRA-HC-AASLALVTYHADPDDARADADE 794
                 344467888999***************9988777665433333555545578888777566799999999999999999***99999998886125688777654157888899999888865.5689********************9754459***********8777766666654.43.3567777777888888777775 PP

>> TIGR01188  drrA: daunorubicin resistance ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.8   0.0    0.0024       0.2      14      41 ..     598     625 ..     586     635 .. 0.82
   2 !   17.5   0.0   5.1e-06   0.00042     118     176 ..     716     777 ..     710     798 .. 0.81

  Alignments for each domain:
  == domain 1    score: 8.8 bits;  conditional E-value: 0.0024
   TIGR01188  14 lkveegevfglLGPnGAGKtttikmLtt 41 
                 l+++   +f++ G nG GK+t++++L +
  MMETSP1137-20121227|3919_1 598 LELPPRGIFAIAGKNGCGKSTLLSILLA 625
                 55666779****************9965 PP

  == domain 2    score: 17.5 bits;  conditional E-value: 5.1e-06
   TIGR01188 118 adkkvktysgGmrrrlelaasliaqPe...vlfLDEPtiGLDprtrraiwdlieelkkegvt 176
                  d +   +sgG+r + el +s+  +P+   vl LDE    LDp ++  + + +++   +  +
  MMETSP1137-20121227|3919_1 716 HDDYCASLSGGQRSKFELLRSVFLRPScppVLLLDEAFAALDPLSKTLVMRKVRAHCAASLA 777
                 56677899**************998654449********************99987766555 PP

>> TIGR02142  modC_ABC: molybdate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.3   0.0   0.00019     0.015       3      43 ..     582     623 ..     580     631 .. 0.81
   2 !   12.8   0.0   0.00013     0.011     129     171 ..     720     765 ..     716     782 .. 0.85

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 0.00019
   TIGR02142   3 lrlekrlgdfeLdvd.lelpgkgvtalFGrsGsGktslirli 43 
                 +r+  + g  ++++d lelp +g+ a+ G+ G+Gk++l+ ++
  MMETSP1137-20121227|3919_1 582 VRAAYERGSASVNIDaLELPPRGIFAIAGKNGCGKSTLLSIL 623
                 666667777788876379*********************986 PP

  == domain 2    score: 12.8 bits;  conditional E-value: 0.00013
   TIGR02142 129 pgkLsGGekqRvaigRAlL...ssPeLLlmDePLaaLDekrkkeil 171
                  ++LsGG + +  + R +    s P +Ll+De  aaLD  +k+ ++
  MMETSP1137-20121227|3919_1 720 CASLSGGQRSKFELLRSVFlrpSCPPVLLLDEAFAALDPLSKTLVM 765
                 689**************9834455679***********99998776 PP

>> TIGR01184  ntrCD: nitrate ABC transporter, ATP-binding proteins C and D
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.8   0.0     0.003      0.24      13      36 ..     605     628 ..     594     681 .. 0.75
   2 !   16.7   0.0   1.1e-05    0.0009     106     156 ..     714     767 ..     694     794 .. 0.81

  Alignments for each domain:
  == domain 1    score: 8.8 bits;  conditional E-value: 0.003
   TIGR01184  13 fislighsgcgkstllnliaglek 36 
                 + ++ g+ gcgkstll ++   ++
  MMETSP1137-20121227|3919_1 605 IFAIAGKNGCGKSTLLSILLACAR 628
                 45789***********98765543 PP

  == domain 2    score: 16.7 bits;  conditional E-value: 1.1e-05
   TIGR01184 106 eaadkrpeqlsggmkqrvaiaralsirpk...lllldepfgaldaltreelqek 156
                 ++ d + + lsgg + +  + r++ +rp    +lllde f ald l++  +  k
  MMETSP1137-20121227|3919_1 714 RTHDDYCASLSGGQRSKFELLRSVFLRPScppVLLLDEAFAALDPLSKTLVMRK 767
                 566788999*****************9754449*************99765544 PP

>> TIGR02204  MsbA_rel: ABC transporter, permease/ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.9   0.0   3.9e-08   3.2e-06     364     531 ..     601     780 ..     580     786 .. 0.62

  Alignments for each domain:
  == domain 1    score: 23.9 bits;  conditional E-value: 3.9e-08
   TIGR02204 364 rpGetvalvGPsGaGkstllelll...rfydPqsGailld..Gvdlreldpeelre.rlalvpqdsalfaasvleniryGrpd.asdeeveaaakaaeadefisklpeGydt....llGergvtLsGGqkqriaiarailkd...apiLLLdeatsaLdaeseqlvqqaleelmkgrttlvi 531
                  p    a+ G  G Gkstll++ll   r   P +G        + l + d + + + + al ++ ++  ++s+l   r  + +  ++   ++aa+ a+   f  + p+  ++    +  +   +LsGGq+ +  + r+++      p+LLLdea +aLd  s +lv + + +  +   +lv 
  MMETSP1137-20121227|3919_1 601 PPRGIFAIAGKNGCGKSTLLSILLacaRSAPPPHGVDFATppSIALPSSDAAIVTHaTTALSTRAPSA-TGSALVA-REAQSEgGAHRLAMRAARLASELHFSAESPDAIAAawmrTHDDYCASLSGGQRSKFELLRSVFLRpscPPVLLLDEAFAALDPLSKTLVMRKVRAHCAASLALVT 780
                 45567899999999999999999834355556666433321144445555554433034444444433.3333332.2222220233334567777777777777666554411115677899**************9864423369*******************9988877766666665 PP

>> TIGR03608  L_ocin_972_ABC: putative bacteriocin export ABC transporter, lactococcin 972 group
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.1   0.0   0.00013     0.011      26      44 ..     605     623 ..     592     630 .. 0.85
   2 !   10.4   0.0   0.00087     0.071     130     179 ..     718     770 ..     709     788 .. 0.81

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 0.00013
   TIGR03608  26 lvaivGesGsGKstlLnil 44 
                 + ai G+ G+GKstlL il
  MMETSP1137-20121227|3919_1 605 IFAIAGKNGCGKSTLLSIL 623
                 78**************998 PP

  == domain 2    score: 10.4 bits;  conditional E-value: 0.00087
   TIGR03608 130 kkiyelsgGekqRvalar.illke..selilADEPtgsLDkknreevlellke 179
                  +  +lsgG++ +  l r + l++  ++++l DE  ++LD+ ++  v++ ++ 
  MMETSP1137-20121227|3919_1 718 DYCASLSGGQRSKFELLRsVFLRPscPPVLLLDEAFAALDPLSKTLVMRKVRA 770
                 56789***********994557763358*******************987655 PP

>> TIGR02982  heterocyst_DevA: ABC exporter ATP-binding subunit, DevA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.8   0.0    0.0058      0.48      26      56 ..     598     629 ..     585     632 .. 0.81
   2 !   15.5   0.0   2.6e-05    0.0021     131     190 ..     713     771 ..     685     788 .. 0.71

  Alignments for each domain:
  == domain 1    score: 7.8 bits;  conditional E-value: 0.0058
   TIGR02982  26 leiepgeiviltGpsGsGkttllt.ligglrs 56 
                 le+ p  i  ++G+ G+Gk tll+ l+++ rs
  MMETSP1137-20121227|3919_1 598 LELPPRGIFAIAGKNGCGKSTLLSiLLACARS 629
                 7788889999*************934556565 PP

  == domain 2    score: 15.5 bits;  conditional E-value: 2.6e-05
   TIGR02982 131 leerldykpedlsgGqkqrvaiaralvarPk...lvladePtaaldkksgrevvellqklare 190
                 +   +d + + lsgGq+ +  + r++  rP+   ++l de  aald  s   v+  ++    +
  MMETSP1137-20121227|3919_1 713 MRT-HDDYCASLSGGQRSKFELLRSVFLRPScppVLLLDEAFAALDPLSKTLVMRKVRA---H 771
                 444.4667899***************9887533389**********9998766544433...2 PP

>> TIGR03005  ectoine_ehuA: ectoine/hydroxyectoine ABC transporter, ATP-binding protein EhuA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.0      0.12       9.6      30      48 ..     607     625 ..     595     630 .. 0.87
   2 !   19.4   0.0   1.3e-06   0.00011     140     204 ..     716     780 ..     709     795 .. 0.78

  Alignments for each domain:
  == domain 1    score: 3.1 bits;  conditional E-value: 0.12
   TIGR03005  30 aliGpsGsGkstilrilmt 48 
                 a++G  G Gkst+l il++
  MMETSP1137-20121227|3919_1 607 AIAGKNGCGKSTLLSILLA 625
                 789*************986 PP

  == domain 2    score: 19.4 bits;  conditional E-value: 1.3e-06
   TIGR03005 140 adalpaqlsGGqkqrvaiaralalrpk...vllfdevtsaldpelveevlnvlrrlasetdltmllvt 204
                 +d + a lsGGq+ +  + r++ lrp    vll+de+ +aldp        v+r++ +    ++ lvt
  MMETSP1137-20121227|3919_1 716 HDDYCASLSGGQRSKFELLRSVFLRPScppVLLLDEAFAALDPLSKTL---VMRKVRAHCAASLALVT 780
                 68899*******************9754449************65544...45555555555556666 PP

>> TIGR03265  PhnT2: putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.0      0.04       3.3      32      50 ..     605     623 ..     582     629 .. 0.82
   2 !   18.1   0.0   3.3e-06   0.00027     127     172 ..     715     763 ..     710     791 .. 0.82

  Alignments for each domain:
  == domain 1    score: 4.6 bits;  conditional E-value: 0.04
   TIGR03265  32 lvclLGPsGCGkttLLrii 50 
                 + ++ G  GCGk+tLL i+
  MMETSP1137-20121227|3919_1 605 IFAIAGKNGCGKSTLLSIL 623
                 5678999*********986 PP

  == domain 2    score: 18.1 bits;  conditional E-value: 3.3e-06
   TIGR03265 127 seekyPgqlsGGqqqrvaLaralalsPg...lLLLDePlsaLDakvrek 172
                 +++ y + lsGGq+ +  L r++ l+P+   +LLLDe ++aLD   +  
  MMETSP1137-20121227|3919_1 715 THDDYCASLSGGQRSKFELLRSVFLRPScppVLLLDEAFAALDPLSKTL 763
                 5789******************9988654449***********766554 PP

>> TIGR03873  F420-0_ABC_ATP: proposed F420-0 ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.6   0.2   6.7e-08   5.5e-06      22     192 ..     598     780 ..     580     803 .. 0.68

  Alignments for each domain:
  == domain 1    score: 23.6 bits;  conditional E-value: 6.7e-08
   TIGR03873  22 vtaPaGaltgllGPnGsGkstllrllaGlla..pdaGevdlagadlkalsrrarar....rvalv.eqdsdaevplsvrdvvalG...riPhrslfaadsdedaevvdralarvelssladrdlstlsGGerqrvhlaralaqePk...lllldePtnhldvsaqlellalvrelaaegvtvvv 192
                 ++ P+  + ++ G nG+Gkstll++l    +  p    vd+a+    al+    a       al     s ++  l +r++   G   r+  r++  a+  + ++    a+a++ + +  d  +  lsGG+r + +l r++  +P+   +lllde    ld  ++  +++ vr  +a   + v 
  MMETSP1137-20121227|3919_1 598 LELPPRGIFAIAGKNGCGKSTLLSILLACARsaPPPHGVDFATPPSIALPSSDAAIvthaTTALStRAPSATGSALVAREAQSEGgahRLAMRAARLASELHFSAESPDAIAAAWMRTH-DDYCASLSGGQRSKFELLRSVFLRPScppVLLLDEAFAALDPLSKTLVMRKVRAHCAASLALVT 780
                 4567778999*************9775544311455568999988777777666541111223331334667889999**999883334555544333333444445556666666554.556789**************9988754448***********99999999999988766555444 PP

>> TIGR01166  cbiO: cobalt ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.6   0.0   0.00076     0.063      20      38 ..     605     623 ..     589     631 .. 0.83
   2 !   11.7   0.0   0.00034     0.028     122     177 ..     717     775 ..     696     786 .. 0.80

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 0.00076
   TIGR01166  20 vlallGanGaGkstlllhl 38 
                   a+ G+nG+Gkstll+ l
  MMETSP1137-20121227|3919_1 605 IFAIAGKNGCGKSTLLSIL 623
                 57999***********987 PP

  == domain 2    score: 11.7 bits;  conditional E-value: 0.00034
   TIGR01166 122 erpthllsgGekkrvaiagavalrpd...vllldePtagldpaGaeqlleilrklreeG 177
                 +  +  lsgG++ +  +   v lrp    vlllde  a ldp  ++ +++ +r   ++ 
  MMETSP1137-20121227|3919_1 717 DDYCASLSGGQRSKFELLRSVFLRPScppVLLLDEAFAALDPLSKTLVMRKVRAHCAAS 775
                 556889******************864448*************9999888777665555 PP

>> TIGR02769  nickel_nikE: nickel import ATP-binding protein NikE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.5   0.0   8.4e-08   6.9e-06      40     195 ..     606     770 ..     591     784 .. 0.81

  Alignments for each domain:
  == domain 1    score: 23.5 bits;  conditional E-value: 8.4e-08
   TIGR02769  40 vallGrsGaGkstlarlllGlek..PakGevsfrGqdlakldrkqrkafrrdvqlvfqdsisavnprksvreiigePlrhltsldeserkariaellelve...lr.sevldklPrqlsGGqlqriniaralavePk...livldeavsnldlvlqasilellkk 195
                  a+ G+ G+Gkstl  +ll  ++  P    v f+  +   l ++++  +      +   ++sa  +   +re  +e   h   + +++     +   e  +        + d + + lsGGq  +  + r++ ++P    +++ldea + ld + ++ +++++++
  MMETSP1137-20121227|3919_1 606 FAIAGKNGCGKSTLLSILLACARsaPPPHGVDFATPPSIALPSSDAAIVTHATTALSTRAPSATGSALVAREAQSEGGAHRLAMRAARLASELHFSAESPDaiaAAwMRTHDDYCASLSGGQRSKFELLRSVFLRPScppVLLLDEAFAALDPLSKTLVMRKVRA 770
                 6889***************99874455677*****************************************************998876655543333333100221345678999*****************997533389***************99987665 PP

>> TIGR01187  potA: polyamine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.1      0.14        11       2      16 ..     609     623 ..     608     630 .. 0.82
   2 !   19.0   0.0   1.6e-06   0.00013      96     133 ..     718     758 ..     708     788 .. 0.84

  Alignments for each domain:
  == domain 1    score: 2.7 bits;  conditional E-value: 0.14
   TIGR01187   2 LGpsGsGkttlLrll 16 
                  G  G+Gk+tlL +l
  MMETSP1137-20121227|3919_1 609 AGKNGCGKSTLLSIL 623
                 5899********987 PP

  == domain 2    score: 19.0 bits;  conditional E-value: 1.6e-06
   TIGR01187  96 rkpsqlsGGqrqrvalaravvkkPk...iLLlDeplsaLDk 133
                  +   lsGGqr +  l r+v  +P    +LLlDe+++aLD 
  MMETSP1137-20121227|3919_1 718 DYCASLSGGQRSKFELLRSVFLRPScppVLLLDEAFAALDP 758
                 56789****************99754449**********95 PP

>> TIGR02314  ABC_MetN: D-methionine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.0      0.15        13      25      49 ..     597     621 ..     585     630 .. 0.83
   2 !   18.0   0.0   3.1e-06   0.00025     133     179 ..     715     764 ..     709     784 .. 0.82

  Alignments for each domain:
  == domain 1    score: 2.5 bits;  conditional E-value: 0.15
   TIGR02314  25 slfvpkgqifgvigasgagkstlir 49 
                 +l +p   if + g  g gkstl+ 
  MMETSP1137-20121227|3919_1 597 ALELPPRGIFAIAGKNGCGKSTLLS 621
                 47788899**************985 PP

  == domain 2    score: 18.0 bits;  conditional E-value: 3.1e-06
   TIGR02314 133 kkdsypsnlsggqkqrvaiaral...asepkvllcdeatsaldpattqsi 179
                  +d y + lsggq+ +  + r++    s p vll dea +aldp +   +
  MMETSP1137-20121227|3919_1 715 THDDYCASLSGGQRSKFELLRSVflrPSCPPVLLLDEAFAALDPLSKTLV 764
                 589******************9733347889*************876544 PP

>> TIGR03771  anch_rpt_ABC: anchored repeat-type ABC transporter, ATP-binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.0      0.13        11       8      30 ..     605     627 ..     598     636 .. 0.84
   2 !   17.3   0.0   7.7e-06   0.00063     109     172 ..     718     784 ..     686     805 .. 0.79

  Alignments for each domain:
  == domain 1    score: 3.5 bits;  conditional E-value: 0.13
   TIGR03771   8 llgllGpnGaGkttllrailgli 30 
                 + ++ G nG Gk+tll  +l+  
  MMETSP1137-20121227|3919_1 605 IFAIAGKNGCGKSTLLSILLACA 627
                 67899***********9999865 PP

  == domain 2    score: 17.3 bits;  conditional E-value: 7.7e-06
   TIGR03771 109 rpvGelsGGqrqrvlvaralavkps...lllldepftGldlpsqellvelfeelagegtailmtthd 172
                      lsGGqr +  + r++ ++ps   +lllde f+ ld  s+ l++  +++ +++  a++    d
  MMETSP1137-20121227|3919_1 718 DYCASLSGGQRSKFELLRSVFLRPScppVLLLDEAFAALDPLSKTLVMRKVRAHCAASLALVTYHAD 784
                 45678***************999765559***********999999888888888887777655545 PP

>> TIGR02673  FtsE: cell division ATP-binding protein FtsE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.8   0.0   0.00076     0.062       7      52 ..     582     627 ..     580     636 .. 0.87
   2 !    9.8   0.0    0.0016      0.13     131     190 ..     716     778 ..     708     791 .. 0.83

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 0.00076
   TIGR02673   7 vskeyaagveaLkdvslkiekgeflfltGasGaGkttllklllgae 52 
                 v  +y++g + ++   l++ ++ +  + G+ G Gk+tll +ll+ +
  MMETSP1137-20121227|3919_1 582 VRAAYERGSASVNIDALELPPRGIFAIAGKNGCGKSTLLSILLACA 627
                 67789888888888899***********************998765 PP

  == domain 2    score: 9.8 bits;  conditional E-value: 0.0016
   TIGR02673 131 akalpeelsgGeqqRvaiaRaivnk...PelllaDePtGnlDdelserildllkelnkrGttv 190
                 ++ +  +lsgG + +  + R++  +   P++ll De    lD+  ++ +++ +++ +++ +++
  MMETSP1137-20121227|3919_1 716 HDDYCASLSGGQRSKFELLRSVFLRpscPPVLLLDEAFAALDPLSKTLVMRKVRAHCAASLAL 778
                 5677899***************977222689*******************9888777766654 PP

>> TIGR02324  CP_lyasePhnL: phosphonate C-P lyase system protein PhnL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   0.0     0.014       1.1      35      56 ..     604     625 ..     590     632 .. 0.82
   2 !   12.5   0.0   0.00019     0.016     148     205 ..     721     781 ..     674     796 .. 0.87

  Alignments for each domain:
  == domain 1    score: 6.4 bits;  conditional E-value: 0.014
   TIGR02324  35 elvalsGksGaGkstllkslya 56 
                  + a++Gk G Gkstll  l a
  MMETSP1137-20121227|3919_1 604 GIFAIAGKNGCGKSTLLSILLA 625
                 56799************99876 PP

  == domain 2    score: 12.5 bits;  conditional E-value: 0.00019
   TIGR02324 148 atfsGGekqRvniaraliad...rPiLLLdePtasLdaanrkvvvelikeakargaaligi 205
                 a  sGG + +  + r++       P+LLLde  a+Ld   +  v+  ++   a+  al++ 
  MMETSP1137-20121227|3919_1 721 ASLSGGQRSKFELLRSVFLRpscPPVLLLDEAFAALDPLSKTLVMRKVRAHCAASLALVTY 781
                 678************9875212259****************99999999999999999874 PP

>> TIGR03410  urea_trans_UrtE: urea ABC transporter, ATP-binding protein UrtE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.2   0.0   0.00023     0.019       6      49 ..     582     626 ..     580     631 .. 0.81
   2 ?    6.6   0.0     0.012         1     130     164 ..     721     758 ..     711     782 .. 0.83

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 0.00023
   TIGR03410   6 levaYgesevlrdvs.levekgevvavlGrngvGkttllkalvgl 49 
                 +++aY++ ++  +++ le++   + a+ G+ng Gk+tll  l++ 
  MMETSP1137-20121227|3919_1 582 VRAAYERGSASVNIDaLELPPRGIFAIAGKNGCGKSTLLSILLAC 626
                 567787777766664489999******************988765 PP

  == domain 2    score: 6.6 bits;  conditional E-value: 0.012
   TIGR03410 130 GdLsGGqqqqlaiaRaLvtePk...lllLDePteGiqP 164
                   LsGGq+ ++ + R++  +P    +llLDe    + P
  MMETSP1137-20121227|3919_1 721 ASLSGGQRSKFELLRSVFLRPScppVLLLDEAFAALDP 758
                 57***************998753338*****8766665 PP

>> TIGR02203  MsbA_lipidA: lipid A export permease/ATP-binding protein MsbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.0     0.063       5.1     353     379 ..     597     623 ..     568     628 .. 0.81
   2 !   17.6   0.0   2.7e-06   0.00023     468     510 ..     720     765 ..     688     782 .. 0.83

  Alignments for each domain:
  == domain 1    score: 3.2 bits;  conditional E-value: 0.063
   TIGR02203 353 slkveaGevvalvGrsGsGkstlvnll 379
                  l++ +  + a+ G+ G Gkstl+++l
  MMETSP1137-20121227|3919_1 597 ALELPPRGIFAIAGKNGCGKSTLLSIL 623
                 4667778899*************9986 PP

  == domain 2    score: 17.6 bits;  conditional E-value: 2.7e-06
   TIGR02203 468 gskLsGGqRqRlaiaRall.kda..PiLiLDeatsaLDneseRlvq 510
                  + LsGGqR +  + R+++ + +  P+L+LDea +aLD  s  lv 
  MMETSP1137-20121227|3919_1 720 CASLSGGQRSKFELLRSVFlRPScpPVLLLDEAFAALDPLSKTLVM 765
                 678*************9852554559************99887765 PP

>> TIGR03719  ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.2   0.0   0.00026     0.021     343     370 ..     598     625 ..     582     632 .. 0.87
   2 !    6.3   0.0    0.0081      0.66     146     201 ..     707     765 ..     683     783 .. 0.76

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 0.00026
   TIGR03719 343 fklpkggivGviGpnGaGkstlfklitg 370
                 ++lp+ gi  + G nG+Gkstl+ ++  
  MMETSP1137-20121227|3919_1 598 LELPPRGIFAIAGKNGCGKSTLLSILLA 625
                 689********************99865 PP

  == domain 2    score: 6.3 bits;  conditional E-value: 0.0081
   TIGR03719 146 amdalrlpeedakveklsGGekrrvalcrlllek...PdlllldePtnhldaesvaWle 201
                 a+ a  +  +d   ++lsGG++ +  l r ++ +   P +lllde    ld  s + + 
  MMETSP1137-20121227|3919_1 707 AIAAAWMRTHDDYCASLSGGQRSKFELLRSVFLRpscPPVLLLDEAFAALDPLSKTLVM 765
                 555666778899999***********99987755112679*****99999977765555 PP

>> TIGR01978  sufC: FeS assembly ATPase SufC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0   1.6e-05    0.0013      21     191 ..     598     772 ..     592     784 .. 0.71

  Alignments for each domain:
  == domain 1    score: 16.0 bits;  conditional E-value: 1.6e-05
   TIGR01978  21 levkkGevhaimGpnGsGkstLskvlaghekyevtsGeiklkgqdlleleveera...raGlflafqapeeipGvsnkeflrsalnavrkargeeel.dllefekllkeklelleldeelleRslneGfsGGekkrneilqlallePk...laiLDeiDsGlDvDalkivaegvnklr 191
                 le+ +  + ai G+nG GkstL ++l    +       + ++    ++l   + a   +a   l++ ap+      +++  +s   a+r a   ++l + l+f+ +  +++++  + +   + +     sGG + + e+l+  +l+P+   + +LDe+ + lD  +  +v+++v    
  MMETSP1137-20121227|3919_1 598 LELPPRGIFAIAGKNGCGKSTLLSILLACARSAPPPHGVDFATPPSIALPSSDAAivtHATTALSTRAPSATGSALVAREAQSEGGAHRLAMRAARLaSELHFSAESPDAIAAAWMRT---HDDYCASLSGGQRSKFELLRSVFLRPScppVLLLDEAFAALDPLSKTLVMRKVRAHC 772
                 556666799****************999888888888899999999999888876333566777777777776666666666666666654444443145566666666665555543...45566789****************9864437999**999999888888888776554 PP

>> TIGR02211  LolD_lipo_ex: lipoprotein releasing system, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.5   0.0    0.0017      0.14      26      53 ..     598     625 ..     581     637 .. 0.80
   2 ?    6.6   0.0     0.013         1     136     200 ..     717     781 ..     710     788 .. 0.81

  Alignments for each domain:
  == domain 1    score: 9.5 bits;  conditional E-value: 0.0017
   TIGR02211  26 leiekgelvaivGssGsGkstllhllgg 53 
                 le+    + ai G+ G Gkstll +l +
  MMETSP1137-20121227|3919_1 598 LELPPRGIFAIAGKNGCGKSTLLSILLA 625
                 566677789**************99855 PP

  == domain 2    score: 6.6 bits;  conditional E-value: 0.013
   TIGR02211 136 nkkpselsGGerqrvaiaralvnkPkl...vladePtgnldkktakkifelllelnkekntallvvth 200
                 + + + lsGG+r +  + r++  +P++   +l de  + ld  + + +   +++++ +   +l +vt+
  MMETSP1137-20121227|3919_1 717 DDYCASLSGGQRSKFELLRSVFLRPSCppvLLLDEAFAALDPLSKTLV---MRKVRAHCAASLALVTY 781
                 567889***************999886554899********8876654...67777777888877775 PP

>> TIGR01288  nodI: nodulation ABC transporter NodI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.0      0.18        15      32      54 ..     605     627 ..     586     647 .. 0.86
   2 !   12.4   0.0   0.00015     0.012     132     194 ..     719     783 ..     701     814 .. 0.79

  Alignments for each domain:
  == domain 1    score: 2.3 bits;  conditional E-value: 0.18
   TIGR01288  32 cfgllgpngagkstiarlvlgli 54 
                  f + g ng+gkst+  ++l  +
  MMETSP1137-20121227|3919_1 605 IFAIAGKNGCGKSTLLSILLACA 627
                 69999**********99999765 PP

  == domain 2    score: 12.4 bits;  conditional E-value: 0.00015
   TIGR01288 132 rvadlsggmkrrltlarali...ndpqllildepttgldpharhliwerlrsllargktilltthl 194
                   a+lsgg + ++ l r++      p +l+lde  + ldp ++ l+  ++r+  a     l+t h 
  MMETSP1137-20121227|3919_1 719 YCASLSGGQRSKFELLRSVFlrpSCPPVLLLDEAFAALDPLSKTLVMRKVRAHCAASL-ALVTYHA 783
                 5789**********99998722234679************************988754.3555554 PP

>> TIGR01842  type_I_sec_PrtD: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.0      0.17        14     340     366 ..     599     625 ..     583     633 .. 0.83
   2 !   11.4   0.0   0.00022     0.018     453     495 ..     721     766 ..     714     783 .. 0.80

  Alignments for each domain:
  == domain 1    score: 1.8 bits;  conditional E-value: 0.17
   TIGR01842 340 alkaGealaiiGpsgsGkssLarllvG 366
                 +l +  + ai G  g Gks+L  +l+ 
  MMETSP1137-20121227|3919_1 599 ELPPRGIFAIAGKNGCGKSTLLSILLA 625
                 56666789**************99976 PP

  == domain 2    score: 11.4 bits;  conditional E-value: 0.00022
   TIGR01842 453 aaLsgGqrqRiaLaRalygdPk...lvvLDePnanLDeeGeqalak 495
                 a+LsgGqr +  L R ++  P    +++LDe  a LD    + +++
  MMETSP1137-20121227|3919_1 721 ASLSGGQRSKFELLRSVFLRPScppVLLLDEAFAALDPLSKTLVMR 766
                 79****************876533389**********877666665 PP

>> TIGR03465  HpnD: squalene synthase HpnD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   2.6e-05    0.0021       8      75 ..     486     553 ..     484     564 .. 0.83

  Alignments for each domain:
  == domain 1    score: 14.9 bits;  conditional E-value: 2.6e-05
   TIGR03465   8 sfyyamrlLpeekrealtalyAfcrevddivdeeldpevkqakLdwwraeidrlyaGapehpvakaLa 75 
                 s+ +++ +L + k   +  l+ f+r v+d+vd  l ++ ++akL ++ra++ +l++  ++ + a aL 
  MMETSP1137-20121227|3919_1 486 SIEVGLAFLLARKHIGIADLWLFSRVVEDTVDTLLMRSRAEAKLSRVRADVLKLQTLLAQIRHATALP 553
                 667899999999999************************************99987555555555555 PP

>> TIGR00958  3a01208: antigen peptide transporter 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.0      0.23        19     505     527 ..     601     623 ..     597     626 .. 0.82
   2 !   11.3   0.0    0.0002     0.016     616     658 ..     721     766 ..     690     782 .. 0.81

  Alignments for each domain:
  == domain 1    score: 1.1 bits;  conditional E-value: 0.23
   TIGR00958 505 epGevvalVGPsGsGKStvaall 527
                  p  + a+ G +G GKSt  ++l
  MMETSP1137-20121227|3919_1 601 PPRGIFAIAGKNGCGKSTLLSIL 623
                 5666789************9988 PP

  == domain 2    score: 11.3 bits;  conditional E-value: 0.0002
   TIGR00958 616 sqlsgGqkqriAiARALvrk...PrvLiLDeAtSALDaeveqllqe 658
                   lsgGq+ +  + R +  +   P vL+LDeA +ALD  +++l+ +
  MMETSP1137-20121227|3919_1 721 ASLSGGQRSKFELLRSVFLRpscPPVLLLDEAFAALDPLSKTLVMR 766
                 679************9876612356************988877765 PP

>> TIGR00960  3a0501s02: type II secretory pathway family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   0.0     0.012      0.96      29      55 ..     603     629 ..     581     636 .. 0.77
   2 ?    6.5   0.0     0.016       1.3     134     181 ..     718     768 ..     707     784 .. 0.79

  Alignments for each domain:
  == domain 1    score: 7.0 bits;  conditional E-value: 0.012
   TIGR00960  29 GelvflvGhsGaGkstllklilgiekp 55 
                   +  ++G+ G+Gkstll ++l+ +++
  MMETSP1137-20121227|3919_1 603 RGIFAIAGKNGCGKSTLLSILLACARS 629
                 4455699*************9998765 PP

  == domain 2    score: 6.5 bits;  conditional E-value: 0.016
   TIGR00960 134 alPvqlsgGeqqrvaiaravvnk...PallladePtgnlddelsrdilell 181
                 ++   lsgG++ +  + r+v  +   P++ll de  + ld+     +++ +
  MMETSP1137-20121227|3919_1 718 DYCASLSGGQRSKFELLRSVFLRpscPPVLLLDEAFAALDPLSKTLVMRKV 768
                 55678***************977222579***********98777777655 PP

>> TIGR03415  ABC_choXWV_ATP: choline ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0       4.1   3.4e+02      51      68 ..     604     621 ..     591     624 .. 0.80
   2 !   13.9   0.0   5.3e-05    0.0043     158     201 ..     716     762 ..     709     767 .. 0.82

  Alignments for each domain:
  == domain 1    score: -2.2 bits;  conditional E-value: 4.1
   TIGR03415  51 eilvlmGlsGsGkssllr 68 
                  i  + G  G Gks+ll 
  MMETSP1137-20121227|3919_1 604 GIFAIAGKNGCGKSTLLS 621
                 57788999********95 PP

  == domain 2    score: 13.9 bits;  conditional E-value: 5.3e-05
   TIGR03415 158 adkkvgelsGGmqqrvGlarafate...adillmdePfsaldPlira 201
                 +d +   lsGG + +  l r++ +     ++ll+de f+aldPl ++
  MMETSP1137-20121227|3919_1 716 HDDYCASLSGGQRSKFELLRSVFLRpscPPVLLLDEAFAALDPLSKT 762
                 4678899*************9766422259*************9765 PP

>> TIGR02633  xylG: D-xylose ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.7   0.0    0.0013      0.11      21      49 ..     597     625 ..     583     636 .. 0.83
   2 ?    3.2   0.0     0.065       5.3     401     457 ..     720     779 ..     707     788 .. 0.85

  Alignments for each domain:
  == domain 1    score: 8.7 bits;  conditional E-value: 0.0013
   TIGR02633  21 dlklraGeivslcGenGaGkstlmkvlsg 49 
                 +l+l +  i ++ G+nG+Gkstl+ +l +
  MMETSP1137-20121227|3919_1 597 ALELPPRGIFAIAGKNGCGKSTLLSILLA 625
                 48899999******************976 PP

  == domain 2    score: 3.2 bits;  conditional E-value: 0.065
   TIGR02633 401 iarlsGGnqqkavlakllllnpr...vlildeptrGvdvGakyeiyklinqlaqeGvaii 457
                  a+lsGG++ k  l + + l+p    vl+lde    +d  +k  + + + + ++  +a++
  MMETSP1137-20121227|3919_1 720 CASLSGGQRSKFELLRSVFLRPScppVLLLDEAFAALDPLSKTLVMRKVRAHCAASLALV 779
                 589*********999999998644449**********99999999999888888888776 PP

>> TIGR00955  3a01204: pigment precursor permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.0      0.02       1.6      53      72 ..     605     624 ..     600     631 .. 0.86
   2 ?    5.4   0.0     0.015       1.2     163     213 ..     719     772 ..     709     784 .. 0.80

  Alignments for each domain:
  == domain 1    score: 5.0 bits;  conditional E-value: 0.02
   TIGR00955  53 llAvlGsSGaGKtTLlnala 72 
                 + A+ G  G GK+TLl++l 
  MMETSP1137-20121227|3919_1 605 IFAIAGKNGCGKSTLLSILL 624
                 679**************985 PP

  == domain 2    score: 5.4 bits;  conditional E-value: 0.015
   TIGR00955 163 rvkglSgGerkRlalasell...tdPilLfcDEPTsGLDsfsaasvvkvLkkla 213
                    +lSgG+r +  l   +    ++P++L++DE  + LD  s + v++ ++  +
  MMETSP1137-20121227|3919_1 719 YCASLSGGQRSKFELLRSVFlrpSCPPVLLLDEAFAALDPLSKTLVMRKVRAHC 772
                 5679********999888764556899*************99999988777655 PP

>> TIGR01194  cyc_pep_trnsptr: cyclic peptide transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   0.0    0.0018      0.15     369     389 ..     605     625 ..     586     631 .. 0.85
   2 ?    0.5   0.0      0.43        35     468     506 ..     721     762 ..     713     769 .. 0.78

  Alignments for each domain:
  == domain 1    score: 8.4 bits;  conditional E-value: 0.0018
   TIGR01194 369 lvyivGenGcGkstliklllG 389
                 +  i G+nGcGkstl+ +ll 
  MMETSP1137-20121227|3919_1 605 IFAIAGKNGCGKSTLLSILLA 625
                 66799***********99986 PP

  == domain 2    score: 0.5 bits;  conditional E-value: 0.43
   TIGR01194 468 tdlstGqrkrlalvn.ayleer..pvllldewaadqdpafkr 506
                 ++ls Gqr ++ l+   +l     pvlllde  a  dp  k 
  MMETSP1137-20121227|3919_1 721 ASLSGGQRSKFELLRsVFLRPScpPVLLLDEAFAALDPLSKT 762
                 689*******999861577653449*******9999997765 PP

>> TIGR03740  galliderm_ABC: lantibiotic protection ABC transporter, ATP-binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   0.00093     0.076      19      47 ..     596     624 ..     581     630 .. 0.79
   2 ?   -0.8   0.0       2.7   2.2e+02     143     159 ..     744     760 ..     736     772 .. 0.87

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 0.00093
   TIGR03740  19 vslkvkknsvygllGpnGaGkstllkllt 47 
                  +l+++ + ++++ G nG+Gkstll +l 
  MMETSP1137-20121227|3919_1 596 DALELPPRGIFAIAGKNGCGKSTLLSILL 624
                 358899999****************9986 PP

  == domain 2    score: -0.8 bits;  conditional E-value: 2.7
   TIGR03740 143 PkllildePtnGldPlG 159
                 P +l+lde    ldPl 
  MMETSP1137-20121227|3919_1 744 PPVLLLDEAFAALDPLS 760
                 889************86 PP

>> TIGR00957  MRP_assoc_pro: multi drug resistance-associated protein (MRP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   0.0    0.0027      0.22     659     686 ..     598     625 ..     585     629 .. 0.86
   2 ?    1.2   0.0      0.12       9.7    1421    1467 ..     722     771 ..     694     783 .. 0.69

  Alignments for each domain:
  == domain 1    score: 6.6 bits;  conditional E-value: 0.0027
   TIGR00957 659 lsipegalvavvgqvgcgkssllsalla 686
                 l++p   + a+ g+ gcgks+lls lla
  MMETSP1137-20121227|3919_1 598 LELPPRGIFAIAGKNGCGKSTLLSILLA 625
                 677888899*****************98 PP

  == domain 2    score: 1.2 bits;  conditional E-value: 0.12
   TIGR00957 1421 nlsvgqrqlvclaral.lrkt..kilvldeataavdletdnliqstirtq 1467
                   ls gqr    l r++ lr +   +l+ldea aa+d  +  l+   +r+ 
  MMETSP1137-20121227|3919_1  722 SLSGGQRSKFELLRSVfLRPScpPVLLLDEAFAALDPLSKTLVMRKVRAH 771 
                  56777777766666542555422477777777777777777777666665 PP

>> TIGR03269  met_CoM_red_A2: methyl coenzyme M reductase system, component A2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.0     0.053       4.3     304     332 ..     597     625 ..     583     635 .. 0.76
   2 ?    5.4   0.0     0.014       1.2     424     469 ..     719     767 ..     710     784 .. 0.56

  Alignments for each domain:
  == domain 1    score: 3.5 bits;  conditional E-value: 0.053
   TIGR03269 304 slevkekeifGlvGtsGaGkttlskilaG 332
                  le+  + if + G+ G Gk+tl  il+ 
  MMETSP1137-20121227|3919_1 597 ALELPPRGIFAIAGKNGCGKSTLLSILLA 625
                 46677788999999999999999888765 PP

  == domain 2    score: 5.4 bits;  conditional E-value: 0.014
   TIGR03269 424 lpdelseGerhrvalaq.vlik..eprivildeptGtmdpitkvkvaes 469
                 +   ls G+r +  l + v+++   p +++lde   ++dp++k+ v + 
  MMETSP1137-20121227|3919_1 719 YCASLSGGQRSKFELLRsVFLRpsCPPVLLLDEAFAALDPLSKTLVMRK 767
                 5555566666555543314444223555666666666666655555433 PP

>> TIGR03411  urea_trans_UrtD: urea ABC transporter, ATP-binding protein UrtD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   0.0     0.002      0.17      18      54 ..     593     629 ..     581     765 .. 0.67

  Alignments for each domain:
  == domain 1    score: 9.4 bits;  conditional E-value: 0.002
   TIGR03411  18 lndlslsveegelrviiGpnGaGkttllDvitGktrp 54 
                 +n  +l++ ++ + +i G nG Gk+tll ++   +r+
  MMETSP1137-20121227|3919_1 593 VNIDALELPPRGIFAIAGKNGCGKSTLLSILLACARS 629
                 55567888999999**************998655553 PP

>> TIGR00618  sbcc: exonuclease SbcC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.0   0.00041     0.033      26      44 ..     601     620 ..     592     625 .. 0.84

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 0.00041
   TIGR00618  26 g.lklfvicGktGaGKtsLl 44 
                 +  ++f+i Gk+G GK++Ll
  MMETSP1137-20121227|3919_1 601 PpRGIFAIAGKNGCGKSTLL 620
                 4478***************9 PP

>> TIGR01715  phage_lam_T: phage tail assembly protein T
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00095     0.078      45     110 ..     748     814 ..     737     815 .. 0.84

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 0.00095
   TIGR01715  45 lldaefstlkaavlslvtgdkeld.aedfslltpaheeeevekekeddellekaaGi.aGGvrygpds 110
                 lld  f++l     +lv+     + a++++l+t  h +++  + + d+el ++++    G +r+g+d+
  MMETSP1137-20121227|3919_1 748 LLDEAFAALDPLSKTLVMRKVRAHcAASLALVT-YHADPDDARADADEELCAVGKRFfDGIIRFGADG 814
                 79**************99876555167788887.99999999999********998615668****98 PP

>> TIGR00929  VirB4_CagE: type IV secretion/conjugal transfer ATPase, VirB4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   0.0   0.00073      0.06     438     462 ..     604     628 ..     593     635 .. 0.87

  Alignments for each domain:
  == domain 1    score: 9.3 bits;  conditional E-value: 0.00073
   TIGR00929 438 GhTlIfGptgsGKTvllnfllaqlq 462
                 G  +I G++g GK++ll++lla ++
  MMETSP1137-20121227|3919_1 604 GIFAIAGKNGCGKSTLLSILLACAR 628
                 5568*****************9775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (855 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       234  (0.0570453); expected 82.0 (0.02)
Passed bias filter:                      176  (0.0429059); expected 82.0 (0.02)
Passed Vit filter:                        87  (0.0212092); expected 4.1 (0.001)
Passed Fwd filter:                        50  (0.0121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              50  [number of targets reported over threshold]
# CPU time: 1.10u 0.29s 00:00:01.39 Elapsed: 00:00:01.06
# Mc/sec: 1064.63
//
Query:       MMETSP1137-20121227|3920_1  [L=293]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.5e-94  312.9   0.3    7.3e-94  312.7   0.2    1.0  1  TIGR01027 proB: glutamate 5-kinase
    2.1e-41  139.7   0.2    3.5e-41  139.0   0.1    1.3  1  TIGR01092 P5CS: delta l-pyrroline-5-carboxylate synthetase
    4.6e-06   23.7   0.8     0.0014   15.6   0.1    2.2  2  TIGR00746 arcC: carbamate kinase
    1.3e-05   22.7   0.0    2.7e-05   21.7   0.0    1.4  1  TIGR02076 pyrH_arch: putative uridylate kinase
     0.0041   14.5   1.0      0.038   11.3   0.3    2.4  2  TIGR00761 argB: acetylglutamate kinase
     0.0055   14.2   0.1      0.079   10.4   0.0    2.2  2  TIGR02075 pyrH_bact: UMP kinase
  ------ inclusion threshold ------
      0.011   12.6   0.0       0.02   11.7   0.0    1.5  1  TIGR00656 asp_kin_monofn: aspartate kinase, monofunctional class
      0.013   12.4   0.1      0.043   10.7   0.0    1.8  2  TIGR00657 asp_kinases: aspartate kinase


Domain annotation for each model (and alignments):
>> TIGR01027  proB: glutamate 5-kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  312.7   0.2   1.4e-96   7.3e-94       1     282 [.       2     292 ..       2     293 .] 0.93

  Alignments for each domain:
  == domain 1    score: 312.7 bits;  conditional E-value: 1.4e-96
   TIGR01027   1 kriVvKlGsssLteesgk.lkrsklaelveqvaklkkaGhevvivsSGavaaGleaLglperpkklaekQalaaVGQgrLmklyeklfsqyglkvaQiLLtradlskrerylNarntleellelgvvpivNENDtvaveeikfGDNDtLsalvaalveAdlLvlltdvdgLydadprtn.....pdAklieeveeieeelkav...agssgssvGTGGmrtKleaaelAsragveviiasgekpekiadlled.aavgtlfeakkkklknrkqwilaaseakGkiivdegae 282
                 ++iVvK+G+ss+ + ++  l++s+la+lve++++l+++Gh+v++vsSGav +G+ ++ l++rp++l e Qa+aa+GQ +Lm+ y++lfs  ++ +aQ+LL+++ l +r+ y+N ++t++ell+lg++p+vNEND+vav+e++fGDNDtLsalva+lv+Ad  +l tdvd+Ly+++p  +       A+ i ev++++++l av   +++sgs++GTGG++tKl aa+lAs+ag+ ++i+ +++pe i ++l + + vgt++ +  ++++n+k+wila++ + G++ vdega+
  MMETSP1137-20121227|3920_1   2 RTIVVKVGTSSILRADTGdLALSTLASLVENLTALRRDGHNVILVSSGAVGVGCVRMKLKTRPTRLPELQAMAAIGQPHLMRYYDELFSALNQPIAQVLLSADALDSRTGYENLQATFTELLSLGIIPVVNENDSVAVSELRFGDNDTLSALVAILVGADHVFLATDVDALYSKNPSAQlapgeEPAEAIREVHDVTAALLAVsvsKTNSGSQWGTGGIATKLRAAQLASAAGITTVIMGATQPEVIPRILGGsRDVGTVLLPAPHTVRNHKRWILALPVQ-GSLRVDEGAA 292
                 58******99977666555*************************************************************************************************************************************************************8643322145999999999999887663337889****************************************9872579*******************99887.********96 PP

>> TIGR01092  P5CS: delta l-pyrroline-5-carboxylate synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  139.0   0.1   6.8e-44   3.5e-41       9     274 ..       3     263 ..       1     275 [. 0.83

  Alignments for each domain:
  == domain 1    score: 139.0 bits;  conditional E-value: 6.8e-44
   TIGR01092   9 rivvkvGtavvtrkder.lalGrlasiveqlselnsdGfevilvtsGavalGrqrlryrklvnssvadllksqveldakacaavGqsglmalyetlfsqldvtaaqllvtdsdfrdedfrkqlsetvkellrlkvvpvlnendavstrkapyedssGivkdndslaallalelkadllillsdveGlydgppsddds......klidifvk.ekh..qdeitf.GeksrlGrGGmeakvkaavyaaygGvsviiasGkaaenitkvveGkk.vGtlfs 274
                  ivvkvGt+ + r+d   lal  las+ve+l+ l+ dG++vilv+sGav++G  r++ ++          ++    + +a aa+Gq  lm +y+ lfs l+  +aq+l++   +  +   ++l+ t  ell l ++pv+nend+v+  +         + dnd+l+al+a+ + ad + l +dv+ ly+  ps + +        i             +++   + s+ G GG+ +k++aa  a  +G++ +i   +++e+i +++ G + vGt++ 
  MMETSP1137-20121227|3920_1   3 TIVVKVGTSSILRADTGdLALSTLASLVENLTALRRDGHNVILVSSGAVGVGCVRMKLKT----------RPTRLPELQAMAAIGQPHLMRYYDELFSALNQPIAQVLLSADALDSRTGYENLQATFTELLSLGIIPVVNENDSVAVSEL-------RFGDNDTLSALVAILVGADHVFLATDVDALYSKNPSAQLApgeepaEAIREVHDvTAAllAVSVSKtNSGSQWGTGGIATKLRAAQLASAAGITTVIMGATQPEVIPRILGGSRdVGTVLL 263
                 69**********999777***********************************9998764..........45555566899*********************************99****************************987543.......3889***************************998876544111111444332220222002233321346899**************************************9755999875 PP

>> TIGR00746  arcC: carbamate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.0   0.0    0.0011      0.55       2      63 ..       3      61 ..       2      82 .. 0.83
   2 !   15.6   0.1   2.6e-06    0.0014     190     238 ..     126     175 ..     122     261 .. 0.88

  Alignments for each domain:
  == domain 1    score: 7.0 bits;  conditional E-value: 0.0011
   TIGR00746  2 kvvvaLGGnallqrgekasaeeqrknvekaakqlvklakrgyelvithGngPqvGalllqne 63
                ++vv +G   +l r +    +   +++++ +++l++l + g+++++++  +  vG + ++ +
  MMETSP1137-20121227|3920_1  3 TIVVKVGTSSIL-RADT--GDLALSTLASLVENLTALRRDGHNVILVSSGAVGVGCVRMKLK 61
                799*********.4444..45568899*********************99999999887654 PP

  == domain 2    score: 15.6 bits;  conditional E-value: 2.6e-06
   TIGR00746 190 GGvPvvkdgkelkGvea.viDkDlasekLaeevnaDilviltdvdavyvn 238
                 G +Pvv++++++  +e    D D  s+++a  v+aD + ++tdvda y +
  MMETSP1137-20121227|3920_1 126 GIIPVVNENDSVAVSELrFGDNDTLSALVAILVGADHVFLATDVDALYSK 175
                 669********999997256**************************9865 PP

>> TIGR02076  pyrH_arch: putative uridylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.7   0.0   5.2e-08   2.7e-05     119     216 ..     148     256 ..     130     262 .. 0.76

  Alignments for each domain:
  == domain 1    score: 21.7 bits;  conditional E-value: 5.2e-08
   TIGR02076 119 davaallaEaleadllinitnvdgvYdkDPkky.....kdakkfkklkaeelvei.veksslkaGsse.....vvDllaakiierskikvivvngedpenlvkvkkgea 216
                 d+ +al+a  + ad +  +t+vd++Y+k P+ +     + a+++++++   +  + v+ s++++Gs+         l aa++++ ++i+++++ +++pe + +++ g+ 
  MMETSP1137-20121227|3920_1 148 DTLSALVAILVGADHVFLATDVDALYSKNPSAQlapgeEPAEAIREVHDVTAALLaVSVSKTNSGSQWgtggiATKLRAAQLASAAGITTVIMGATQPEVIPRILGGSR 256
                 899***************************9753333367999999875544443133577778877511111455667788999**************9999766654 PP

>> TIGR00761  argB: acetylglutamate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.0      0.12        61       1      50 [.       3      61 ..       3      73 .. 0.72
   2 !   11.3   0.3   7.4e-05     0.038     127     187 ..     118     178 ..     113     240 .. 0.88

  Alignments for each domain:
  == domain 1    score: 0.8 bits;  conditional E-value: 0.12
   TIGR00761  1 tiViKiGGaais.........elleelakdiaklrkegiklvivHGGgpeinelleklg 50
                tiV+K+G + i            l +l++++  lr  g ++++v  G   +  +  kl+
  MMETSP1137-20121227|3920_1  3 TIVVKVGTSSILradtgdlalSTLASLVENLTALRRDGHNVILVSSGAVGVGCVRMKLK 61
                57888887766545555554456788899999999999999999888777766666555 PP

  == domain 2    score: 11.3 bits;  conditional E-value: 7.4e-05
   TIGR00761 127 lleallkagiipviaslaldeegqllNvnaDtaAaelAaaleAekLvlLtdvaGilegdkk 187
                    +ll  giipv++     +  +l   + Dt+ a +A  ++A+++ l tdv+ +++++ +
  MMETSP1137-20121227|3920_1 118 TFTELLSLGIIPVVNENDSVAVSELRFGDNDTLSALVAILVGADHVFLATDVDALYSKNPS 178
                 66899*********998888888999999**************************998444 PP

>> TIGR02075  pyrH_bact: UMP kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.0       0.1        53       3      49 ..       3      49 ..       1      65 [. 0.86
   2 !   10.4   0.0   0.00015     0.079     137     170 ..     147     179 ..     140     185 .. 0.92

  Alignments for each domain:
  == domain 1    score: 1.1 bits;  conditional E-value: 0.1
   TIGR02075  3 rvllKlsGeaLakekkfgidekrlekiakeikevvkkgvevgiviGG 49
                 +++K+   ++   ++  +  ++l+++++++ +++  g +v +v  G
  MMETSP1137-20121227|3920_1  3 TIVVKVGTSSILRADTGDLALSTLASLVENLTALRRDGHNVILVSSG 49
                689999999988888889999******************99887544 PP

  == domain 2    score: 10.4 bits;  conditional E-value: 0.00015
   TIGR02075 137 tDtaaalraieieadvilkgkkgvdGvysaDPkk 170
                  Dt +al ai + ad ++ +++ vd +ys++P  
  MMETSP1137-20121227|3920_1 147 NDTLSALVAILVGADHVFLATD-VDALYSKNPSA 179
                 6999******************.*********76 PP

>> TIGR00656  asp_kin_monofn: aspartate kinase, monofunctional class
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0     4e-05      0.02     117     192 ..     108     179 ..      81     207 .. 0.83

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 4e-05
   TIGR00656 117 AkikelateerLlelLeegiivvvaGFiGateeGeiTtLGRGGSDltAallaaalkAdrveiyTDVeGvyttDPrv 192
                  +  +++++   +elL  gii+vv      +    +  L  G  D+  al+a  + Ad+v + TDV+ +y+  P  
  MMETSP1137-20121227|3920_1 108 SRTGYENLQATFTELLSLGIIPVVN----ENDSVAVSELRFGDNDTLSALVAILVGADHVFLATDVDALYSKNPSA 179
                 5555666667888999999999996....67778899999999****************************99975 PP

>> TIGR00657  asp_kinases: aspartate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0      0.29   1.5e+02      18      59 ..      25      66 ..       2     126 .. 0.60
   2 ?   10.7   0.0   8.5e-05     0.043     154     224 ..     111     177 ..      90     181 .. 0.83

  Alignments for each domain:
  == domain 1    score: -0.9 bits;  conditional E-value: 0.29
   TIGR00657 18 rikkvakivkkekekgnqvvVVvSAmagvTdaLvelaekvss 59
                 +  +++ +++ ++ g++v+ V S   gv    ++l  +  +
  MMETSP1137-20121227|3920_1 25 TLASLVENLTALRRDGHNVILVSSGAVGVGCVRMKLKTRPTR 66
                344445555556666666666666666655555555555555 PP

  == domain 2    score: 10.7 bits;  conditional E-value: 8.5e-05
   TIGR00657 154 leeikterleklleegiivvvaGFiGatekgeittLGRGGSDltAallAaalkAdeveiytDVdGiytaDP 224
                  +e  ++  ++ll+ gii+vv      +++  +  L  G  D+  al+A +++Ad v + tDVd  y+  P
  MMETSP1137-20121227|3920_1 111 GYENLQATFTELLSLGIIPVVN----ENDSVAVSELRFGDNDTLSALVAILVGADHVFLATDVDALYSKNP 177
                 6677777888889999999985....78999999999999***************************9988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (293 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       147  (0.0358362); expected 82.0 (0.02)
Passed bias filter:                      123  (0.0299854); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         8  (0.00195027); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.32u 0.18s 00:00:00.50 Elapsed: 00:00:00.51
# Mc/sec: 758.29
//
Query:       MMETSP1137-20121227|3921_1  [L=165]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (165 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        71  (0.0173086); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.17s 00:00:00.34 Elapsed: 00:00:00.61
# Mc/sec: 357.02
//
Query:       MMETSP1137-20121227|3922_1  [L=163]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (163 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        66  (0.0160897); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.18s 00:00:00.32 Elapsed: 00:00:00.41
# Mc/sec: 524.74
//
Query:       MMETSP1137-20121227|3923_1  [L=351]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (351 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        62  (0.0151146); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.13s 00:00:00.38 Elapsed: 00:00:00.52
# Mc/sec: 890.93
//
Query:       MMETSP1137-20121227|3925_1  [L=158]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (158 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        70  (0.0170648); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.12s 00:00:00.30 Elapsed: 00:00:00.38
# Mc/sec: 548.80
//
Query:       MMETSP1137-20121227|3926_1  [L=339]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0012   14.5  24.4     0.0014   14.2  16.9    1.1  1  TIGR02168 SMC_prok_B: chromosome segregation protein SMC
      0.002   13.7  19.9     0.0024   13.4  13.8    1.1  1  TIGR02169 SMC_prok_A: chromosome segregation protein SMC


Domain annotation for each model (and alignments):
>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2  16.9     7e-07    0.0014     721     903 ..     135     312 ..      86     334 .. 0.41

  Alignments for each domain:
  == domain 1    score: 14.2 bits;  conditional E-value: 7e-07
   TIGR02168 721 keleelerklselkkelerlekeveqleerlaqlekeleeleeereeleeeleeaeeelkeaeeeieeleaeieqlkeelkalrealseleaeltelkeeaaekeerleslekeiaalekeleeleeqieeleeeiesleaeieeleeeleeleeeleellkekasleealaelreeleelse 903
                 +++   e +     + +e+ +++v  lee l+++ +++e  +++++e  +    ++e++ ++e+e      e ++ ++el++ r++++ l ++l+++k  ++e ++++++ e++ + l+ el+++ e++++le++++++e+ei++l+++  +l+ e+ +l +++a+l++  ++ ++ ++el++
  MMETSP1137-20121227|3926_1 135 AAAVVHESSGMGVTAMIEEQRRRVVLLEEALQRAAEAIEASKQQQREILA---RSQERILRTEQEARIACVEGRTWQKELNEARSRIAHLCEDLRKTKGVVKEHASAMAMAESREKLLRAELHTVGEEKNSLEKKLQAAEHEIAKLDSA--TLTVEVRNLRNRVAALQATANAFEATQRELAR 312
                 22222222222233333333333333333333333333222222222222...222222222222222222223334444444444444444444444444444444444444444444444444444444444444444444444442..44444444444444444444433333333333 PP

>> TIGR02169  SMC_prok_A: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4  13.8   1.2e-06    0.0024     727     891 ..     145     306 ..      85     332 .. 0.39

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 1.2e-06
   TIGR02169 727 eqleeeeeklkerleeleeklseleeeleekkeelkeleaeieeleeklaklkealedleaelseekieeieeelekleeevsriearleeieaelnklelekelleeeiqelqeeieeleeqkkeiekeieelkakleeleeeleeleaavreLeeelkdLkke 891
                   + +  e++++r+  lee l+   e++e+ k+++ e+ a+ +e+  + +  ++ ++ +e +  +++++e ++++ +l e +++ +++++e  +++   e +++ll+ e ++  ee + le++ ++ e+ei++l    + l  e+++l+++v+ L++  +  ++ 
  MMETSP1137-20121227|3926_1 145 MGVTAMIEEQRRRVVLLEEALQRAAEAIEASKQQQREILARSQERILRTE-QEARIACVEGRTWQKELNEARSRIAHLCEDLRKTKGVVKEHASAMAMAESREKLLRAELHTVGEEKNSLEKKLQAAEHEIAKLDS--ATLTVEVRNLRNRVAALQATANAFEAT 306
                 33333333333333333333333333333333333333333332222221.2233333333333333333333333333333333333333333333333333333333333333333333333333333322222..111111111111111111111111111 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (339 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       471  (0.114822); expected 82.0 (0.02)
Passed bias filter:                      130  (0.0316919); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.35u 0.17s 00:00:00.52 Elapsed: 00:00:00.52
# Mc/sec: 860.47
//
Query:       MMETSP1137-20121227|3927_1  [L=219]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (219 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       108  (0.0263286); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.16s 00:00:00.36 Elapsed: 00:00:00.30
# Mc/sec: 963.52
//
Query:       MMETSP1137-20121227|3928_1  [L=180]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (180 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        95  (0.0231594); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.10s 00:00:00.30 Elapsed: 00:00:00.55
# Mc/sec: 431.96
//
Query:       MMETSP1137-20121227|3929_1  [L=723]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (723 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       174  (0.0424183); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.15s 00:00:00.60 Elapsed: 00:00:01.44
# Mc/sec: 662.70
//
Query:       MMETSP1137-20121227|3930_1  [L=180]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.026   10.4   0.2      0.032   10.1   0.1    1.1  1  TIGR02390 RNA_pol_rpoA1: DNA-directed RNA polymerase subunit A'
       0.36    8.8   5.9       0.19    9.7   1.3    2.2  2  TIGR00100 hypA: hydrogenase nickel insertion protein HypA


Domain annotation for each model (and alignments):
>> TIGR02390  RNA_pol_rpoA1: DNA-directed RNA polymerase subunit A'
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.1   1.6e-05     0.032     133     185 ..      87     141 ..      72     157 .. 0.74

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 1.6e-05
   TIGR02390 133 kivkeaakkkkCPhCgeeqkeiklekPvefyeeekeg..kvkltpsevrerleki 185
                 +++ +++k+ +CP+C++ ++ + +  P++  e++k    ++++   ++  ++ + 
  MMETSP1137-20121227|3930_1  87 QVTPRSSKNASCPYCKRANYAVDFRGPLSALEQQKLQsdEQRVIELQIESQVRQA 141
                 56778899********************999988754234666666666555554 PP

>> TIGR00100  hypA: hydrogenase nickel insertion protein HypA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.0     0.079   1.6e+02      76      93 ..      45      62 ..      38      65 .. 0.86
   2 ?    9.7   1.3     9e-05      0.19      72     100 ..      80     108 ..      73     124 .. 0.90

  Alignments for each domain:
  == domain 1    score: 0.2 bits;  conditional E-value: 0.079
   TIGR00100 76 cseevepeideldkCpkC 93
                c++ ve  + + ++Cp C
  MMETSP1137-20121227|3930_1 45 CYRGVEDPAPDREECPIC 62
                8999999889999****9 PP

  == domain 2    score: 9.7 bits;  conditional E-value: 9e-05
   TIGR00100  72 eCedcseevepeideldkCpkCkskelkv 100
                  C +c+ +v+p   + ++Cp Ck  +  v
  MMETSP1137-20121227|3930_1  80 ICTECYLQVTPRSSKNASCPYCKRANYAV 108
                 5***********99*********998877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (180 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       103  (0.0251097); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.20u 0.13s 00:00:00.33 Elapsed: 00:00:00.46
# Mc/sec: 516.48
//
Query:       MMETSP1137-20121227|3931_1  [L=966]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0011   15.0   0.0      0.053    9.4   0.0    2.1  2  TIGR00870 trp: transient-receptor-potential calcium channel protein


Domain annotation for each model (and alignments):
>> TIGR00870  trp: transient-receptor-potential calcium channel protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    3.5   0.0   0.00079       3.2      79     158 ..     380     475 ..     298     498 .. 0.70
   2 !    9.4   0.0   1.3e-05     0.053     130     160 ..     626     656 ..     551     665 .. 0.88

  Alignments for each domain:
  == domain 1    score: 3.5 bits;  conditional E-value: 0.00079
   TIGR00870  79 e.........egevGdalL.haiskelvdaveailllllkaarksltls......elandestseftkgitalilAihkqnyeivklLlekgasve 158
                 +          ++ G +lL +a++ +   av ++l ++ + ++ + + +      +l ++++    ++g t l+ A +  n ei ++L++ gas  
  MMETSP1137-20121227|3931_1 380 RwrgelddklGAKSGMTLLrYAVLARATTAVRELLPPPHELKQMDAKSRrrildaPLTIKRENPPLFPGFTLLHHASIYGNEEIMRMLIKAGASTR 475
                 3555555555577888888344555778888888887766654444333678888999999999*****************************976 PP

  == domain 2    score: 9.4 bits;  conditional E-value: 1.3e-05
   TIGR00870 130 kgitalilAihkqnyeivklLlekgasvear 160
                  g tal+lA+ + + e+ +lL+  ga+  +r
  MMETSP1137-20121227|3931_1 626 LGATALHLAAARGDAECMRLLIGAGARTDIR 656
                 599***********************97765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (966 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        93  (0.0226719); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.59u 0.15s 00:00:00.74 Elapsed: 00:00:00.56
# Mc/sec: 2276.81
//
Query:       MMETSP1137-20121227|3932_1  [L=240]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00041   17.2   0.0    0.00052   16.9   0.0    1.1  1  TIGR02037 degP_htrA_DO: peptidase Do
     0.0011   16.9   0.0     0.0036   15.2   0.0    1.7  2  TIGR01244 TIGR01244: TIGR01244 family protein
     0.0013   15.7   0.0     0.0017   15.3   0.0    1.1  1  TIGR00225 prc: C-terminal processing peptidase
  ------ inclusion threshold ------
      0.015   12.6   0.1      0.024   11.9   0.0    1.3  1  TIGR03198 pucE: xanthine dehydrogenase E subunit


Domain annotation for each model (and alignments):
>> TIGR02037  degP_htrA_DO: peptidase Do
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.0   5.1e-07   0.00052     256     319 ..      70     134 ..      44     147 .. 0.77

  Alignments for each domain:
  == domain 1    score: 16.9 bits;  conditional E-value: 5.1e-07
   TIGR02037 256 ekakGalvaevlkgspAekaGl.kaGDvilkvngkkiksaadlreaigtlkpgkkvklkilRkgk 319
                  +a+G++v++v+++++A  aG+   GD++lkv + +++s+     + +  ++++ v l+  R+g 
  MMETSP1137-20121227|3932_1  70 GRAEGVFVSNVFPDGAAFAAGIiWPGDYLLKVGDIDVSSFCFEDVMSALRAAESPVLLQFERDGG 134
                 5679*****************7369*************985433333333445567777777764 PP

>> TIGR01244  TIGR01244: TIGR01244 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0      0.49     5e+02      84     133 ..      34      82 ..      28      83 .. 0.73
   2 !   15.2   0.0   3.5e-06    0.0036      76     126 ..     112     164 ..      85     168 .. 0.84

  Alignments for each domain:
  == domain 1    score: -1.5 bits;  conditional E-value: 0.49
   TIGR01244  84 aaeaPvlayCrsGtrssllWalsqaaegvpleeivrraqaaGydlsalle 133
                 +a  Pv  y  +G  +s   +      g+  ee v++++a G+ +s++ +
  MMETSP1137-20121227|3932_1  34 SAAHPVRLYMMAGIPCSTFESSLPKPMGLAFEE-VEEGRAEGVFVSNVFP 82 
                 577788889999988888776666666777777.5778888888887765 PP

  == domain 2    score: 15.2 bits;  conditional E-value: 3.5e-06
   TIGR01244  76 etfraaleaaeaPvl.ayCrsGtrss.llWalsqaaegvpleeivrraqaaGy 126
                 e + +al aae+Pvl  + r G rs+ +++  + aa gvp + + + aq aG+
  MMETSP1137-20121227|3932_1 112 EDVMSALRAAESPVLlQFERDGGRSVrVVFPDKTAAFGVPGDSLAELAQLAGF 164
                 6667899******9637*******9835678889999**************96 PP

>> TIGR00225  prc: C-terminal processing peptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   1.7e-06    0.0017      62     124 ..      73     136 ..      58     147 .. 0.85

  Alignments for each domain:
  == domain 1    score: 15.3 bits;  conditional E-value: 1.7e-06
   TIGR00225  62 deivivsplegsPAekag.ikpgDkIikvdgksvagmelddavelirGkkgtkvkleierag.kk 124
                 + + + +++ ++ A  ag i pgD ++kv++ +v +   +d+++++r   ++ v l+ er g ++
  MMETSP1137-20121227|3932_1  73 EGVFVSNVFPDGAAFAAGiIWPGDYLLKVGDIDVSSFCFEDVMSALRAA-ESPVLLQFERDGgRS 136
                 4688999***********99***************************75.689999999987444 PP

>> TIGR03198  pucE: xanthine dehydrogenase E subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   2.4e-05     0.024      37      56 ..     167     186 ..     147     198 .. 0.77

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 2.4e-05
   TIGR03198  37 kvscgigrcgacavlvdgkv 56 
                    c+ grcg+c +++dg  
  MMETSP1137-20121227|3932_1 167 NYQCQQGRCGSCELFLDGSK 186
                 568**************964 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (240 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        95  (0.0231594); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.22u 0.13s 00:00:00.35 Elapsed: 00:00:00.40
# Mc/sec: 791.93
//
Query:       MMETSP1137-20121227|3933_1  [L=63]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (63 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        65  (0.0158459); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.13s 00:00:00.24 Elapsed: 00:00:00.25
# Mc/sec: 332.61
//
Query:       MMETSP1137-20121227|3934_1  [L=220]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      9e-25   85.1   0.4    1.1e-24   84.9   0.3    1.0  1  TIGR00132 gatA: aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, A subunit
    3.6e-17   60.3   1.5    4.1e-17   60.1   1.0    1.1  1  TIGR02715 amido_AtzE: amidohydrolase, AtzE family
    1.3e-12   44.9   1.2    1.4e-12   44.7   0.8    1.1  1  TIGR02713 allophanate_hyd: allophanate hydrolase


Domain annotation for each model (and alignments):
>> TIGR00132  gatA: aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, A subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.9   0.3   8.1e-28   1.1e-24      66     220 ..      27     181 ..      13     203 .. 0.92

  Alignments for each domain:
  == domain 1    score: 84.9 bits;  conditional E-value: 8.1e-28
   TIGR00132  66 KdniavkdiettcaSkiLenyvspydatVverlkeagaliiGktNlDEFamGsstetSafgvtknPeneervpGGSsgGsaaavaadlvplalgsDTGgSiRqPAsfcgvvGlKPtYGlvSRyGlvayasSldqiGilakkvedialvldvisgk 220
                 K+ i++ d++ + +  +L++  ++ d+  v++++ea+ +i+GktN+ E a   +t + a g+   P+n + + GGSsgGsaaava  ++ +a+  DTGgS   PA+     G  P        G  a++   dq G+ a++++di    +++ g+
  MMETSP1137-20121227|3934_1  27 KAAIVTTDFPSSIGFALLDDMYAVSDSALVTLVREANGVIFGKTNVPELARNRATGNYANGLCLSPWNVDDITGGSSGGSAAAVASLTAAIAITEDTGGSTNIPATRNHNFGYDPPKYHYPNGGNPALTVRNDQLGLNARTIDDIIEFDKAVLGT 181
                 889***************************************************************************************************************98889999999******************998877777765 PP

>> TIGR02715  amido_AtzE: amidohydrolase, AtzE family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.1   1.0     3e-20   4.1e-17      96     229 ..      49     182 ..      31     218 .. 0.88

  Alignments for each domain:
  == domain 1    score: 60.1 bits;  conditional E-value: 3e-20
   TIGR02715  96 akrdatlvqrlkaaGavlvGalnmdeyaygfttenahyGatrnPhdltriaGGssGGsaaavaaglvplslGsdtnGsirvPaslCGvfGlkPtyGrlsrrgvfpfvesldhvGPlarsvedlalvydvlqGed 229
                 a  d++lv  +++a  v+ G  n+ e a + +t n  +G    P + + i+GGssGGsaaava+    +++  dt Gs  +Pa+    fG+ P   + +  g   ++   d++G  ar+++d+     ++ G+ 
  MMETSP1137-20121227|3934_1  49 AVSDSALVTLVREANGVIFGKTNVPELARNRATGNYANGLCLSPWNVDDITGGSSGGSAAAVASLTAAIAITEDTGGSTNIPATRNHNFGYDPPKYHYPNGGNPALTVRNDQLGLNARTIDDIIEFDKAVLGTT 182
                 7889*****************************************************************************************999*******999999*************988777777743 PP

>> TIGR02713  allophanate_hyd: allophanate hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.7   0.8   1.1e-15   1.4e-12      61     182 ..      49     170 ..      28     193 .. 0.86

  Alignments for each domain:
  == domain 1    score: 44.7 bits;  conditional E-value: 1.1e-15
   TIGR02713  61 peedatvvaklraaGaivvGktnlDqFAtGLvGtRsPygavrnafdeeyisGGsssGsavavarGlvsfaLGtDtAGsGRvPAalnnlvGlkptkGlvsttGvvPAcrslDcvsvfaltved 182
                 + +d++ v+ +r+a +++ Gktn+   A          g + +  + + i+GGss Gsa ava+ ++++a+  Dt Gs  +PA+ n   G  p k   ++ G    +  +D + + a+t++d
  MMETSP1137-20121227|3934_1  49 AVSDSALVTLVREANGVIFGKTNVPELARNRATGNYANGLCLSPWNVDDITGGSSGGSAAAVASLTAAIAITEDTGGSTNIPATRNHNFGYDPPKYHYPNGGNPALTVRNDQLGLNARTIDD 170
                 4578999*********************9999889999************************************************999999988777776643334455666666666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (220 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       105  (0.0255973); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.24u 0.18s 00:00:00.42 Elapsed: 00:00:00.40
# Mc/sec: 725.94
//
Query:       MMETSP1137-20121227|3935_1  [L=422]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (422 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        91  (0.0221843); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.15s 00:00:00.44 Elapsed: 00:00:00.56
# Mc/sec: 977.18
//
Query:       MMETSP1137-20121227|3936_1  [L=269]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (269 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       157  (0.038274); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.15s 00:00:00.43 Elapsed: 00:00:00.43
# Mc/sec: 825.70
//
Query:       MMETSP1137-20121227|3937_1  [L=518]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.6e-62  208.4   0.0    9.8e-59  197.1   0.0    2.0  2  TIGR00555 panK_eukar: pantothenate kinase


Domain annotation for each model (and alignments):
>> TIGR00555  panK_eukar: pantothenate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.4   0.0   3.4e-05      0.14       2      18 ..      87     103 ..      86     126 .. 0.84
   2 !  197.1   0.0   2.4e-62   9.8e-59       6     302 ..     154     450 ..     149     452 .. 0.90

  Alignments for each domain:
  == domain 1    score: 9.4 bits;  conditional E-value: 3.4e-05
   TIGR00555   2 klgiDiGGtLiKvvyes 18 
                 +lg+DiGGtL+K+v  +
  MMETSP1137-20121227|3937_1  87 HLGLDIGGTLAKLVVAT 103
                 69************874 PP

  == domain 2    score: 197.1 bits;  conditional E-value: 2.4e-62
   TIGR00555   6 DiGGtLiKvvye.saeeeknrlvfktvetekidkvieflkeaikeh..krietlkaTGGgafklaellkekleiklskldElealieGlefllkeevkeaftyedddkervkqkkskdiypyllvNiGtGvSilkvdskdnyeRvgGtslGGGtllGLgkLltkietfdellelakkGdrkevDllVkdiYg.tdyekiglkssliAssfgkvls..kekdesfkkedilksllvlisnnigqiayllakeen.ikrivfiGsflrnnlllmkvlssaiefwskGelkalflkhegylGAlGal 302
                 D+G +     ++ ++ +   +l f+ v t  +++ ++ l+++      ++++++   GGg  k+a  ++e l ++l  ++El+a++ Gl fl +  +++  + +dd     +   ++++ p++lvN+G+GvS+l+vd++++++R+gGts+GG t+lGL+  lt++ +f el+ la++Gd +++D+ V+diYg +  + +g++++l+A+sf+k+     e  +  + +d+++++l++++++ + ia+  ak+   ++r++f+G fl+nn l ++++++ +   +    +a+f +h  +lGAlG+l
  MMETSP1137-20121227|3937_1 154 DAGRSVLDHLFHtESSHATLQLRFVSVGTAGLEQAVRKLRSQFALEdmRQVREIVTAGGGGHKFAAMFREVLRVQLVPFKELQAVVDGLLFLSQFGPEDELYCQDD----ACYAWPETLFPFVLVNMGSGVSVLRVDGPQHFTRIGGTSVGGATFLGLSRALTGVGDFRELMRLAARGDASAIDKSVGDIYGaAGCTDLGMPHDLTAASFAKLSGadGELPAPASAPDLVAATLRMVAQVSTVIAIAHAKQIGcMDRVFFVGGFLQNNDLAQSLITTSMLSLG---GRAIFCRHAPFLGALGSL 450
                 66666555444435667889999***************998875333499999******************************************99866666555....467778999*************************************************************************445689**************976557888999*************************9986479*******************99998888...79**************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (518 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       128  (0.0312043); expected 82.0 (0.02)
Passed bias filter:                      112  (0.0273038); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.13s 00:00:00.51 Elapsed: 00:00:00.53
# Mc/sec: 1290.01
//
Query:       MMETSP1137-20121227|3938_1  [L=194]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.12    9.5   3.3       0.12    9.4   1.8    1.3  1  TIGR02997 Sig70-cyanoRpoD: RNA polymerase sigma factor, cyanobacterial RpoD-like family


Domain annotation for each model (and alignments):
>> TIGR02997  Sig70-cyanoRpoD: RNA polymerase sigma factor, cyanobacterial RpoD-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   1.8     3e-05      0.12     163     228 ..       3      67 ..       1      81 [. 0.75

  Alignments for each domain:
  == domain 1    score: 9.4 bits;  conditional E-value: 3e-05
   TIGR02997 163 lkkvqrelsqklgrepseaelaealeleveqvrellkaarkpvsLdakvGkeedtelgdlledeee 228
                 +k+++r+l ++l rep+ +e+a++ +  +++ + +l++ ++   L ++v +  +  ++++++++++
  MMETSP1137-20121227|3938_1   3 IKRIKRTLRESLHREPTDKEIAQEKKRLKKEKELTLQQ-AQEPNLGHEVENPARDAMQQVVTASAK 67 
                 89*********************987555554444444.455578888888888888877776555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (194 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       176  (0.0429059); expected 82.0 (0.02)
Passed bias filter:                      110  (0.0268162); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.21u 0.17s 00:00:00.38 Elapsed: 00:00:00.25
# Mc/sec: 1024.24
//
Query:       MMETSP1137-20121227|3939_1  [L=470]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   4.3e-125  416.5   5.6   5.3e-125  416.2   3.9    1.0  1  TIGR00487 IF-2: translation initiation factor IF-2
    1.1e-27   94.5   8.2    4.4e-16   56.2   0.0    3.1  2  TIGR00491 aIF-2: translation initiation factor aIF-2
    7.2e-18   62.4   0.5    1.1e-17   61.8   0.3    1.2  1  TIGR00475 selB: selenocysteine-specific translation elongation factor
    4.3e-13   47.2   0.0    8.2e-13   46.3   0.0    1.5  1  TIGR00231 small_GTP: small GTP-binding protein domain
    2.5e-10   38.0   0.0    4.6e-10   37.1   0.0    1.4  1  TIGR03680 eif2g_arch: translation initiation factor 2, gamma subunit
    1.4e-09   34.6   1.7    1.6e-07   27.7   0.1    2.3  2  TIGR01394 TypA_BipA: GTP-binding protein TypA/BipA
      2e-09   34.8   1.5    1.3e-06   25.6   0.0    2.9  3  TIGR02034 CysN: sulfate adenylyltransferase, large subunit
    1.2e-08   31.9   3.5    2.4e-08   31.0   0.2    2.1  2  TIGR00485 EF-Tu: translation elongation factor Tu
    4.7e-08   30.3   0.0    7.5e-08   29.6   0.0    1.3  1  TIGR03594 GTPase_EngA: ribosome-associated GTPase EngA
    5.7e-08   29.5   0.7    1.2e-07   28.4   0.0    1.8  2  TIGR00483 EF-1_alpha: translation elongation factor EF-1, subunit alpha
    2.4e-07   27.3   0.4    2.4e-06   24.0   0.0    2.1  2  TIGR01393 lepA: GTP-binding protein LepA
      3e-06   23.5   0.0    7.2e-06   22.2   0.0    1.6  2  TIGR00484 EF-G: translation elongation factor G
    3.6e-05   19.8   0.2     0.0031   13.5   0.0    2.1  2  TIGR00490 aEF-2: translation elongation factor aEF-2
    3.9e-05   20.1   0.0    6.5e-05   19.3   0.0    1.3  1  TIGR00503 prfC: peptide chain release factor 3
    0.00053   16.7   0.0     0.0011   15.7   0.0    1.5  1  TIGR03918 GTP_HydF: [FeFe] hydrogenase H-cluster maturation GTPase HydF
    0.00094   16.7   0.0     0.0016   16.0   0.0    1.3  1  TIGR03598 GTPase_YsxC: ribosome biogenesis GTP-binding protein YsxC


Domain annotation for each model (and alignments):
>> TIGR00487  IF-2: translation initiation factor IF-2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  416.2   3.9  2.1e-127  5.3e-125     138     581 ..       2     452 ..       1     457 [. 0.93

  Alignments for each domain:
  == domain 1    score: 416.2 bits;  conditional E-value: 2.1e-127
   TIGR00487 138 tflDtPGheaftsmrarGakvtDivvlvvaadDGvkpqtieaiehakaanvPiivainkiDkpean..pDrvkqelseyglvpeewGGetifvpvsalkgkgideLldaiLlqseveelkanknkqakgvvieakldkgrGpvatvlvqeGtLkvGDivvvgaayGkvramidekGksvkeagPsiaveilGlsevPaaGdelivvkdekkarlvaekraeklkqkklsksvkvkleelseqikegelkelniilkaDvqGsleaiknslekleveevkvkvihsgvGeitetDislasasnaiiigfnvrldakakkvaeaenvdlrkysviyklideikavlkGlldPeleeeviGkaevrevfkvp...........kiGaiaGcvvkeGvikrdnklrvlrdgvvifeGeidsLkrfkddvkeveegyeCGiviknyndikvGDiieafevke 581
                 tf+DtPGhe f++mr rGa +tD+++lvva + Gv++ t eai +a ++++P++va nk Dk  a+   +++kq+l + g++ e  GGe+ +vpvsa k  ++deL d++Llq+e++el+a + ++a+gvviea+++kg G ++t lvq+G LkvGD vvvg++yGkvr ++de+G++++ea Ps++v+ +Gl+++P++Gdelivv+ ek+ar+v+e r +kl   +++ + +          + +++ ++++++kaD+qGslea+k+ l +  +  v+++ + ++vG+ +e Di+la++ +a +igfnv  ++k   +a + +v +r y+viykl+d +k vl+  + P ++   +Gkaev+evf+ +           k   +aG+ v +G+ +  +k+ v+r+++++++G++ sLk+fk++vk +++g eCGi+++++ ++ +GD+i+ +e + 
  MMETSP1137-20121227|3939_1   2 TFIDTPGHELFAAMRQRGATATDLILLVVAIESGVQDTTREAIRYALDSGTPLVVAANKADKAGADeqIEKLKQQLLQEGVMLEGMGGEVPLVPVSATKRMNLDELRDTLLLQAELLELHAPPTGRAEGVVIEATVHKGLGHLTTALVQSGRLKVGDHVVVGTTYGKVRVLQDESGNKMSEALPSTPVRFSGLKDLPSSGDELIVVESEKRAREVSEFRSDKLVLEREAAASQ------RRGRRVRNVIQVPVVIKADSQGSLEAVKEGLAHYPTSLVELSTVRAAVGAFSEGDIQLAASVKADMIGFNVPISKKLDVLATQAGVTVRSYDVIYKLVDGVKEVLEAKIPPAIDSVATGKAEVQEVFQLTlnrkdrregmfKKTFVAGSRVVSGQAAATSKVAVMRGEEQLYDGHVISLKHFKQEVKTLKKGAECGIILHEFGEFEKGDMIVFYEHVP 452
                 8*************************************************************98872268*****************************************************************************************************************************************************99654444444333......33445567899********************************************************************************************************************8643333332222244679********************************************************************9865 PP

>> TIGR00491  aIF-2: translation initiation factor aIF-2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.2   0.0   1.7e-18   4.4e-16      73     134 ..       3      64 ..       1      80 [. 0.95
   2 !   36.2   3.6     2e-12   5.2e-10     190     533 ..      90     434 ..      84     455 .. 0.66

  Alignments for each domain:
  == domain 1    score: 56.2 bits;  conditional E-value: 1.7e-18
   TIGR00491  73 vidtPGheaftslrkrGGaladiailvvdineGfkpqtveavnilrqlktPfvvaankidri 134
                 +idtPGhe+f+++r+rG + +d+ +lvv i  G++  t ea+       tP+vvaank d+ 
  MMETSP1137-20121227|3939_1   3 FIDTPGHELFAAMRQRGATATDLILLVVAIESGVQDTTREAIRYALDSGTPLVVAANKADKA 64 
                 9**********************************************************985 PP

  == domain 2    score: 36.2 bits;  conditional E-value: 2e-12
   TIGR00491 190 tvaiiPvsavtGeGipelllilaGlaqkyledrlklevegkakGtilevkeekGlGvtidaiiydGilkkgdilvvalkddvlvtrvkallkPkPlde....mreerdkfkkvdevtaaagvkiaapeldkviagspirvvskekiekakeevlkeveeiki.evddeGilvkadtlGslealvnelrka.....gvkikkaevGdvskkdvvevasakqenklygaivafnvkilpeaekeiekydikvfldniiyklvedfeewikke......eerkkrkeleklikPaki.rilpdlifrqkdPaivGvevlaGvlr..vgaplikedGe.kvGevreikdrgenvkeakagkavsiaid 533
                 +v ++Pvsa +   + el   l+ l  + le  l+    g+a G+++e   +kGlG    a++  G lk gd +vv+++ +    +v+ l + +  ++    + ++  +f+ +++  +++   i+ ++++++   s     s +k+   +e   ++    ++ +v ++ +++kad+ Gslea+ + l +      ++   +a vG  s  d+  +as+k +      ++ fnv i  +++  + + ++ v + ++iyklv+ ++e ++ +        ++ + e++++ + +   +  ++ +f+  +  ++G +v++G+     ++ +++ + +   G+v ++k+ +++vk+ k+g +  i ++
  MMETSP1137-20121227|3939_1  90 EVPLVPVSATKRMNLDELRDTLL-LQAELLE--LHAPPTGRAEGVVIEATVHKGLGHLTTALVQSGRLKVGDHVVVGTTYG----KVRVL-QDESGNKmseaLPSTPVRFSGLKDLPSSGDELIVVESEKRAREVSE--FRS-DKLVLEREAAASQRRGRRVrNVIQVPVVIKADSQGSLEAVKEGLAHYptslvELSTVRAAVGAFSEGDIQLAASVKAD------MIGFNVPISKKLDVLATQAGVTVRSYDVIYKLVDGVKEVLEAKippaidSVATGKAEVQEVFQLTLNrKDRREGMFK--KTFVAGSRVVSGQAAatSKVAVMRGEEQlYDGHVISLKHFKQEVKTLKKGAECGIILH 434
                 57789999999988888877664.4444444..666678*************************************99865....55543.3333333000034444556666665555555555444444332222..222.33333344444444444441456789****************998752221134456799********9999888754......689*********************************99887531111111222333333333333220233445553..5678888888887651145666764433145888888888888888888888777665 PP

>> TIGR00475  selB: selenocysteine-specific translation elongation factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.8   0.3   4.2e-20   1.1e-17      53     222 ..       2     173 ..       1     184 [. 0.87

  Alignments for each domain:
  == domain 1    score: 61.8 bits;  conditional E-value: 4.2e-20
   TIGR00475  53 gliDvPGHekflknalagvggidaalLvvdadeGvkaqtkEHLavlkllgikelivvltKaDrvdeeevkevEeelkeileeeeflk....nakivkvsAktGqGieeLkkelknLlesldak.dkqkplrlaiDraFkvKGaGtvvtGtafsGevkvgDelvlepinkkvrvka 222
                 ++iD PGHe f      g ++ d +lLvv+ + Gv+  t+E ++ +   g + l+v+ +KaD++  +  +++E++ +++l+e  +l     +  +v vsA++   ++eL+++l+  +e+l+ +          + +a + KG G   t  + sG+ kvgD++v+  +  kvrv +
  MMETSP1137-20121227|3939_1   2 TFIDTPGHELFAAMRQRGATATDLILLVVAIESGVQDTTREAIRYALDSGTP-LVVAANKADKAGAD--EQIEKLKQQLLQEGVMLEgmggEVPLVPVSATKRMNLDELRDTLLLQAELLELHaPPTGRAEGVVIEATVHKGLGHLTTALVQSGRLKVGDHVVVGTTYGKVRVLQ 173
                 79**************************************************.9**********988..89999999999998887622226689******************988888887633445556667789999*************************8888888854 PP

>> TIGR00231  small_GTP: small GTP-binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.3   0.0   3.2e-15   8.2e-13      56     162 ..       2     111 ..       1     113 [. 0.91

  Alignments for each domain:
  == domain 1    score: 46.3 bits;  conditional E-value: 3.2e-15
   TIGR00231  56 nllDTaGqedfdairrlyvreverslevvdivilvldveeglekqtkeiiheakkkgvpiilvvnKiDlkd.........dlktkvkslfaklnaep.iielsaetgknidklfklv 162
                 +++DT+G+e f        ++++r +  +d+++lv+++e+g+++ t+e i++a  +g+p+++++nK D+ +         + + +++  ++ +++e  ++++sa +++n+d+l +++
  MMETSP1137-20121227|3939_1   2 TFIDTPGHELF-------AAMRQRGATATDLILLVVAIESGVQDTTREAIRYALDSGTPLVVAANKADKAGadeqieklkQQLLQEGVMLEGMGGEVpLVPVSATKRMNLDELRDTL 111
                 58*********.......99***************************************************999888666555667777889999988*************999875 PP

>> TIGR03680  eif2g_arch: translation initiation factor 2, gamma subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.1   0.0   1.8e-12   4.6e-10      84     192 ..       2     111 ..       1     124 [. 0.82

  Alignments for each domain:
  == domain 1    score: 37.1 bits;  conditional E-value: 1.8e-12
   TIGR03680  84 sfvDaPGhetLmatmlsGaalmdgalLviaaneevPqpqtkehlv.aleiigiknivivqnkidlvskekalenyee..ike.fvkgtvaenapiiPvsalkkvnidvlleal 192
                 +f+D+PGhe + a    Ga+  d  lLv+a +  v q  t+e +  al+  +   +v++ nk d    ++ +e+ ++  ++e ++ + +  + p++Pvsa+k++n+d l ++l
  MMETSP1137-20121227|3939_1   2 TFIDTPGHELFAAMRQRGATATDLILLVVAIESGV-QDTTREAIRyALD--SGTPLVVAANKADKAGADEQIEKLKQqlLQEgVMLEGMGGEVPLVPVSATKRMNLDELRDTL 111
                 59*******99999999************999999.999***9862666..45789********99999999988762223323344557899**************987765 PP

>> TIGR01394  TypA_BipA: GTP-binding protein TypA/BipA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.7   0.1   6.3e-10   1.6e-07      68     240 ..       3     167 ..       2     179 .. 0.74
   2 !    5.6   0.1    0.0032      0.81     187     270 ..     347     433 ..     318     453 .. 0.81

  Alignments for each domain:
  == domain 1    score: 27.7 bits;  conditional E-value: 6.3e-10
   TIGR01394  68 ivDtPGhaDfGGevervlsmvdgvlllvDaseGplpqtrfvlkkalelglkpivvinkiDrpdarpeevvdevfdLfve.lgaddeqldfpvvyasakeGvasleeedesedleplfdailehvpaPkadkdeplqllvttldydeylGriaigrverGkvkkgqqvallkkdg 240
                  +DtPGh  f     r  +  d +ll+v  + G+   tr  ++ al+ g   +v  nk D++ a+  ++ +   +L+ e +  +    ++p v  sa + +   e +d+      l++a l +++aP + + e + +       ++ lG+++++ v++G++k g++v + ++ g
  MMETSP1137-20121227|3939_1   3 FIDTPGHELFAAMRQRGATATDLILLVVAIESGVQDTTREAIRYALDSGTPLVVAANKADKAGADE-QIEKLKQQLLQEgVMLEGMGGEVPLVPVSATKRMNLDELRDTL-----LLQAELLELHAPPTGRAEGVVIE---ATVHKGLGHLTTALVQSGRLKVGDHVVVGTTYG 167
                 59***********************************************************98874.3444444555442334444556777777776655444443333.....55655555666655555555444...445677899999999999999999988766655 PP

  == domain 2    score: 5.6 bits;  conditional E-value: 0.0032
   TIGR01394 187 lehvpaPkadkdeplqllvttldyde..ylGr.iaigrverGkvkkgqqvallkkdgkiekariskllafeglerveideaeaGdiv 270
                 ++ v++ ka+ +e +ql     d  e  +    +a +rv +G+  + ++va+++ ++++ ++++ +l +f++  ++  + ae G i+
  MMETSP1137-20121227|3939_1 347 IDSVATGKAEVQEVFQLTLNRKDRREgmFKKTfVAGSRVVSGQAAATSKVAVMRGEEQLYDGHVISLKHFKQEVKTLKKGAECGIIL 433
                 6788888999999999999988876622433325667******************************99998887777778888664 PP

>> TIGR02034  CysN: sulfate adenylyltransferase, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.6   0.0   4.9e-09   1.3e-06      85     187 ..       4     106 ..       2     115 .. 0.85
   2 ?    1.9   0.1     0.079        20     238     315 ..     148     225 ..     136     267 .. 0.68
   3 !    4.9   0.0    0.0097       2.5     205     305 ..     348     454 ..     341     461 .. 0.78

  Alignments for each domain:
  == domain 1    score: 25.6 bits;  conditional E-value: 4.9e-09
   TIGR02034  85 adtPGheqytrnmatgastadlavllvdarkGvleqtrrhsiiasllGikhvvlavnkidlvdydeevfeeikkdylalaekl..gvsdvtviPlsalkGdnvve 187
                  dtPGhe ++     ga+++dl +l+v    Gv++ t r +i  +l     +v+a nk d  + de++ e++k++ l+    l     +v  +P+sa k  n+ e
  MMETSP1137-20121227|3939_1   4 IDTPGHELFAAMRQRGATATDLILLVVAIESGVQDTT-REAIRYALDSGTPLVVAANKADKAGADEQI-EKLKQQLLQEGVMLegMGGEVPLVPVSATKRMNLDE 106
                 59********************999999999998765.6677778888889************99876.89999999999999533468999*****99888765 PP

  == domain 2    score: 1.9 bits;  conditional E-value: 0.079
   TIGR02034 238 tiasGsvkvGdevvvlpsgresrvarivtfdgelekaeaGeavtlvledeidisrGdlla.aadeapevadqfaaelvw 315
                 +++sG++kvGd+vvv     + rv +  +  +++++a     v +   +++  s  +l++ + +++++ +++f+ + + 
  MMETSP1137-20121227|3939_1 148 LVQSGRLKVGDHVVVGTTYGKVRVLQD-ESGNKMSEALPSTPVRFSGLKDLPSSGDELIVvESEKRAREVSEFRSDKLV 225
                 789***********9777666666553.334445566666666655555555555555441334445555556555555 PP

  == domain 3    score: 4.9 bits;  conditional E-value: 0.0097
   TIGR02034 205 etveveesaeeeelrlpvqyvnrpnldfrG.y.aG.tiasGsvkvGdevvvlpsgre...srvarivtfdgelekaeaGeavtlvledeidisrGdllaaadeapev 305
                 ++v++ +++ +e ++l +++  r +  f+  + aG  + sG+ +   +v v+   ++    +v ++  f++e+++ + G    ++l++  + ++Gd+++  +++p+ 
  MMETSP1137-20121227|3939_1 348 DSVATGKAEVQEVFQLTLNRKDRREGMFKKtFvAGsRVVSGQAAATSKVAVMRGEEQlydGHVISLKHFKQEVKTLKKGAECGIILHEFGEFEKGDMIVFYEHVPRK 454
                 56666677777777888888877777776423255359999999999***998765422278999999*******************************99888776 PP

>> TIGR00485  EF-Tu: translation elongation factor Tu
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.0   0.2   9.3e-11   2.4e-08      79     246 ..       3     162 ..       1     173 [. 0.79
   2 ?    1.8   0.1     0.067        17     224     282 ..     377     436 ..     299     457 .. 0.74

  Alignments for each domain:
  == domain 1    score: 31.0 bits;  conditional E-value: 9.3e-11
   TIGR00485  79 hvdcpghadyvknmitgaaqmdgailvvsaadgpmpqtrehillarqvgvpklvvflnkvdlvddeellelvele.vrellseydfpgddvpivrgsalkalegdaeweekilelmeavdeyiptperevdkpfllaiedvfsitgrgtvvtgrvergevkvgeeveiv 246
                  +d pgh  +      ga+  d  +lvv+   g+   tre i  a + g p lvv  nk d +  +e +e ++ + ++e +   +  g +vp+v  sa k ++ d+  ++ +l  +e ++ + p   r  +    + ie ++  +g g ++t  v+ g +kvg++v  v
  MMETSP1137-20121227|3939_1   3 FIDTPGHELFAAMRQRGATATDLILLVVAIESGVQDTTREAIRYALDSGTP-LVVAANKADKAGADEQIEKLKQQlLQEGVM-LEGMGGEVPLVPVSATKRMNLDE-LRDTLLLQAELLELHAPPTGR-AEG---VVIEATV-HKGLGHLTTALVQSGRLKVGDHVV-V 162
                 68******9999999***********************************9.67789****997766666555550555555.5556669***********98775.566666556666655554444.443...4566655.589******************984.4 PP

  == domain 2    score: 1.8 bits;  conditional E-value: 0.067
   TIGR00485 224 rgtvvtgrvergevkvgeeveiv.glketkkttvtgvemfkklldeakagdnvgvllrgv 282
                 +  v+  rv  g+   + +v ++ g ++  +  v  ++ fk+++++ k g + g++l   
  MMETSP1137-20121227|3939_1 377 KTFVAGSRVVSGQAAATSKVAVMrGEEQLYDGHVISLKHFKQEVKTLKKGAECGIILHEF 436
                 344666799999999999998874666888999999999999999999999999998754 PP

>> TIGR03594  GTPase_EngA: ribosome-associated GTPase EngA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.6   0.0   2.9e-10   7.5e-08     255     342 ..      20     111 ..       6     140 .. 0.86

  Alignments for each domain:
  == domain 1    score: 29.6 bits;  conditional E-value: 2.9e-10
   TIGR03594 255 ieradvvllvlDategiseqDlkiaglileegkalvivvNKwDlvkdekeleelkkeleeklkflk....fapivfiSAltgkgveklleai 342
                  +  d++llv+ +++g+++   + ++++l++g +lv++ NK D+   ++++e+lk++l ++  +l+     +p+v +SA++++++++l +++
  MMETSP1137-20121227|3939_1  20 ATATDLILLVVAIESGVQDTTREAIRYALDSGTPLVVAANKADKAGADEQIEKLKQQLLQEGVMLEgmggEVPLVPVSATKRMNLDELRDTL 111
                 45789****************************************999*********999887775222268**************998876 PP

>> TIGR00483  EF-1_alpha: translation elongation factor EF-1, subunit alpha
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.4   0.0   4.5e-10   1.2e-07      88     262 ..       2     162 ..       1     192 [. 0.77
   2 ?   -3.7   0.1       2.5   6.4e+02      36     105 ..     357     426 ..     351     435 .. 0.64

  Alignments for each domain:
  == domain 1    score: 28.4 bits;  conditional E-value: 4.5e-10
   TIGR00483  88 tivdapghrdfiknmitgasqadaavlvvavddgelevqpqtrehvllartlgikqlivainkmdsvnydeekfeelkkevsellkkvgykpdevefipvsaykgdnvvkksenapwykgktllealdkleapekpvdkplripiqdvysitgvgtvpvgrvetgvlkkgekvvf 262
                 t +d+pgh  f      ga+ +d  +lvva+++g   vq  tre +  a   g   l+va nk d+   de + e+lk+++ +   ++     ev+++pvsa k  n+ +  +        tll   + le    p+ +   + i+      g+g +    v++g lk+g++vv 
  MMETSP1137-20121227|3939_1   2 TFIDTPGHELFAAMRQRGATATDLILLVVAIESG---VQDTTREAIRYALDSGT-PLVVAANKADKAGADE-QIEKLKQQLLQEGVMLEGMGGEVPLVPVSATKRMNLDELRD--------TLLLQAELLELHAPPTGRAEGVVIEAT-VHKGLGHLTTALVQSGRLKVGDHVVV 162
                 88**********999****************999...**************996.699********99875.6899999988766666667789********99998876544........333334444444445555555555443.33577777777777777777777765 PP

  == domain 2    score: -3.7 bits;  conditional E-value: 2.5
   TIGR00483  36 erlleklkkeaeekgkasfefayvldklkeerergvtidvahkkfetdkyevtivdapghrdfiknmitg 105
                  + + +l  + +++  + f+ ++v        +   t  va ++ e + y+  ++     ++ +k +  g
  MMETSP1137-20121227|3939_1 357 VQEVFQLTLNRKDRREGMFKKTFVAGSRVVSGQAAATSKVAVMRGEEQLYDGHVISLKHFKQEVKTLKKG 426
                 5555556666666777777777777666666666777777777777777777777666666666665555 PP

>> TIGR01393  lepA: GTP-binding protein LepA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.0   0.0   9.5e-09   2.4e-06      74     227 ..       3     165 ..       1     187 [. 0.83
   2 ?    1.4   0.1     0.068        17     205     258 ..     379     433 ..     314     452 .. 0.74

  Alignments for each domain:
  == domain 1    score: 24.0 bits;  conditional E-value: 9.5e-09
   TIGR01393  74 lidtPGhvdfsyevsrslaaceGalllvdaaqGveaqtlanvylalekdleiiPvinkidlPsad..vervkkei.eeviGld....aeeailvsaktGigieelleaivkkvp..aPkgdkeaplkalifdsvydayrGvvvyvrvveGkikkgdkikllst 227
                 +idtPGh  f+    r  +a++  ll+v    Gv+  t   +  al++   ++   nk d   ad  +e++k+++ +e + l+    +   + vsa + ++++el ++++ +    + +  ++ + + ++++++  +  G ++   v +G++k+gd++ + +t
  MMETSP1137-20121227|3939_1   3 FIDTPGHELFAAMRQRGATATDLILLVVAIESGVQDTTREAIRYALDSGTPLVVAANKADKAGADeqIEKLKQQLlQEGVMLEgmggEVPLVPVSATKRMNLDELRDTLLLQAEllELHAPPTGRAEGVVIEATVHKGLGHLTTALVQSGRLKVGDHVVVGTT 165
                 8************************************************************999744789999973454544411113356889***********999886654115566677889999***************************9987666 PP

  == domain 2    score: 1.4 bits;  conditional E-value: 0.068
   TIGR01393 205 vvvyvrvveGkikkgdkikllstgke.yeveevgvltpklvkeeelkaG.evGyli 258
                  v+  rvv+G+ ++  k++++  +++ y+ + + + ++k++ + +lk G e G++ 
  MMETSP1137-20121227|3939_1 379 FVAGSRVVSGQAAATSKVAVMRGEEQlYDGHVISLKHFKQEVK-TLKKGaECGIIL 433
                 566789***************9865527777777777776665.555552677765 PP

>> TIGR00484  EF-G: translation elongation factor G
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.2   0.0   2.8e-08   7.2e-06      79     160 ..       3      82 ..       1      90 [. 0.89
   2 ?   -2.6   0.0      0.91   2.3e+02     321     351 ..     141     171 ..     128     195 .. 0.88

  Alignments for each domain:
  == domain 1    score: 22.2 bits;  conditional E-value: 2.8e-08
   TIGR00484  79 lidtPGhvdftveverslrvldGavavldavaGvepqsetvwrqakkyevPrivfvnkmdkiGanflkvveqlksrldvnav 160
                  idtPGh  f+   +r     d  ++v+   +Gv+  +    r a   + P +v  nk dk Ga+ +   e+lk++l  + v
  MMETSP1137-20121227|3939_1   3 FIDTPGHELFAAMRQRGATATDLILLVVAIESGVQDTTREAIRYALDSGTPLVVAANKADKAGADEQ--IEKLKQQLLQEGV 82 
                 69**************************************************************954..5667777765555 PP

  == domain 2    score: -2.6 bits;  conditional E-value: 0.91
   TIGR00484 321 vgkltfvrvysGvlksGsevlnsrkekkerv 351
                  g+lt   v sG lk G++v+  ++  k rv
  MMETSP1137-20121227|3939_1 141 LGHLTTALVQSGRLKVGDHVVVGTTYGKVRV 171
                 58999999**********9999888888776 PP

>> TIGR00490  aEF-2: translation elongation factor aEF-2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   0.0   1.2e-05    0.0031      90     154 ..       3      67 ..       1      85 [. 0.84
   2 !    4.3   0.0    0.0071       1.8     282     334 ..     120     172 ..     111     178 .. 0.90

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 1.2e-05
   TIGR00490  90 lidtpghvdfggdvtramravdgaivvvcavegvmpqtetvlrqalkenvkpvlfinkvdrline 154
                 +idtpgh  f     r   a d +++vv+   gv   t   +r al      v+  nk d+   +
  MMETSP1137-20121227|3939_1   3 FIDTPGHELFAAMRQRGATATDLILLVVAIESGVQDTTREAIRYALDSGTPLVVAANKADKAGAD 67 
                 79*********************999999999****************999999*****987543 PP

  == domain 2    score: 4.3 bits;  conditional E-value: 0.0071
   TIGR00490 282 lncdpegplavvitkivvdkhagevavgrlysgaikkgsevylvdskakariq 334
                 l++ p g   +v+ + +v+k  g+++++ + sg++k g+ v +  +  k r+ 
  MMETSP1137-20121227|3939_1 120 LHAPPTGRAEGVVIEATVHKGLGHLTTALVQSGRLKVGDHVVVGTTYGKVRVL 172
                 5677999999*******************************999888888875 PP

>> TIGR00503  prfC: peptide chain release factor 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.0   2.5e-07   6.5e-05      84     148 ..       3      67 ..       1      83 [. 0.90

  Alignments for each domain:
  == domain 1    score: 19.3 bits;  conditional E-value: 2.5e-07
   TIGR00503  84 lldtpGhedfsedtyrtltavdsalmvidaakGveertrkllevtrlrdlpiltflnkldrdird 148
                 ++dtpGhe f+    r  ta+d  l+v+    Gv++ tr  +  +    +p++   nk d+   d
  MMETSP1137-20121227|3939_1   3 FIDTPGHELFAAMRQRGATATDLILLVVAIESGVQDTTREAIRYALDSGTPLVVAANKADKAGAD 67 
                 68**********************************************************97654 PP

>> TIGR03918  GTP_HydF: [FeFe] hydrogenase H-cluster maturation GTPase HydF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   4.3e-06    0.0011      84     147 ..      20      83 ..       2     121 .. 0.73

  Alignments for each domain:
  == domain 1    score: 15.7 bits;  conditional E-value: 4.3e-06
   TIGR03918  84 lektdlallvvdaeaeleeleeelleelkekkipvivvlnkidlkeeekekeklekkkeeevvl 147
                  + tdl+llvv  e++++++ +e ++ + +  +p++v++nk+d++ ++++ ekl+++  +e v+
  MMETSP1137-20121227|3939_1  20 ATATDLILLVVAIESGVQDTTREAIRYALDSGTPLVVAANKADKAGADEQIEKLKQQLLQEGVM 83 
                 4679****************************************99998877766665444333 PP

>> TIGR03598  GTPase_YsxC: ribosome biogenesis GTP-binding protein YsxC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0   6.2e-06    0.0016     103     185 ..      25     111 ..      15     112 .. 0.81

  Alignments for each domain:
  == domain 1    score: 16.0 bits;  conditional E-value: 6.2e-06
   TIGR03598 103 gvvllvDirhelkelDlellellkeakipvlvvltKaDklkkselkkalkk.vkk...elkkeeekvevllfSslkkegieelkael 185
                  ++l+v i  +++++ +e ++++ ++++p++v ++KaDk    e+ ++lk+ + +    l+ +  +v ++ +S++k+++++el+++l
  MMETSP1137-20121227|3939_1  25 LILLVVAIESGVQDTTREAIRYALDSGTPLVVAANKADKAGADEQIEKLKQqLLQegvMLEGMGGEVPLVPVSATKRMNLDELRDTL 111
                 578899999******************************98777655554413332334566678899***************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (470 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       195  (0.0475378); expected 82.0 (0.02)
Passed bias filter:                      109  (0.0265724); expected 82.0 (0.02)
Passed Vit filter:                        20  (0.00487567); expected 4.1 (0.001)
Passed Fwd filter:                        16  (0.00390054); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              16  [number of targets reported over threshold]
# CPU time: 0.56u 0.11s 00:00:00.67 Elapsed: 00:00:00.76
# Mc/sec: 816.25
//
Query:       MMETSP1137-20121227|3940_1  [L=523]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      9e-26   88.9   0.2    1.7e-25   88.0   0.2    1.4  1  TIGR02349 DnaJ_bact: chaperone protein DnaJ
    2.3e-23   80.3   0.3    2.3e-23   80.3   0.2    2.0  2  TIGR03835 termin_org_DnaJ: terminal organelle assembly protein TopJ


Domain annotation for each model (and alignments):
>> TIGR02349  DnaJ_bact: chaperone protein DnaJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.0   0.2   8.2e-29   1.7e-25       2      91 ..     232     320 ..     231     375 .. 0.77

  Alignments for each domain:
  == domain 1    score: 88.0 bits;  conditional E-value: 8.2e-29
   TIGR02349   2 YYeiLgvskdAseeeikkAYrklakkyHPDrnkgekeaeekfkeineAyevLsdeekraqYDqfghagleggaggggagfegfeasefgd 91 
                 YYe Lgv+ dAs+++ik+AY kla++ HPD+n++++ea+++f++  eAy+vLs+e+ ra+YD  g++gl+ +      g e+fe+ ++g+
  MMETSP1137-20121227|3940_1 232 YYEALGVDVDASQADIKRAYLKLARQLHPDKNPDDPEAKARFQKLGEAYQVLSNEDSRARYDASGKDGLDXTFYMLVFGSEQFEQ-FIGE 320
                 **********************************************************************987664444444442.2333 PP

>> TIGR03835  termin_org_DnaJ: terminal organelle assembly protein TopJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -5.6   4.9       1.1   2.3e+03      99     133 ..     187     221 ..     177     231 .. 0.68
   2 !   80.3   0.2   1.1e-26   2.3e-23       4      98 ..     232     328 ..     229     358 .. 0.86

  Alignments for each domain:
  == domain 1    score: -5.6 bits;  conditional E-value: 1.1
   TIGR03835  99 dltdddkkskkkkkkkkkgwfwakskeeektiete 133
                 d +    k+ +kk  kkk++  +k ke+e++++ +
  MMETSP1137-20121227|3940_1 187 DASSAGDKKGDKKGDKKKDGKKGKGKEKEEEVDED 221
                 44555556667777888888899999999988864 PP

  == domain 2    score: 80.3 bits;  conditional E-value: 1.1e-26
   TIGR03835   4 yyevLgidrDadeqeikkafrkLakkyhPDrnka.adaakifaeineandvLsnPkkraryDkyGhDGvDre.ddldfdadvfdsffeeieksdefd 98 
                 yye Lg+d Da + +ik+a+ kLa++ hPD+n + ++a+  f+ + ea++vLsn + raryD  G DG+D     l f ++ f+ f  e++ +    
  MMETSP1137-20121227|3940_1 232 YYEALGVDVDASQADIKRAYLKLARQLHPDKNPDdPEAKARFQKLGEAYQVLSNEDSRARYDASGKDGLDXTfYMLVFGSEQFEQFIGELQLASLLG 328
                 ********************************999***********************************8735789*********99998776554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (523 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       272  (0.0663091); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.13s 00:00:00.56 Elapsed: 00:00:00.66
# Mc/sec: 1045.91
//
Query:       MMETSP1137-20121227|3941_1  [L=74]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (74 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        73  (0.0177962); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.18s 00:00:00.32 Elapsed: 00:00:00.44
# Mc/sec: 221.98
//
Query:       MMETSP1137-20121227|3942_1  [L=527]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (527 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       112  (0.0273038); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.15s 00:00:00.52 Elapsed: 00:00:00.44
# Mc/sec: 1580.87
//
Query:       MMETSP1137-20121227|3943_1  [L=480]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (480 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        82  (0.0199902); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.11s 00:00:00.44 Elapsed: 00:00:00.55
# Mc/sec: 1151.90
//
Query:       MMETSP1137-20121227|3944_1  [L=371]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (371 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        89  (0.0216967); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.17s 00:00:00.48 Elapsed: 00:00:00.55
# Mc/sec: 890.33
//
Query:       MMETSP1137-20121227|3945_1  [L=283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.4e-06   24.5   6.9    3.9e-05   21.0   3.4    2.1  2  TIGR03467 HpnE: squalene-associated FAD-dependent desaturase
     0.0014   15.6   1.7     0.0028   14.6   1.0    1.5  2  TIGR03197 MnmC_Cterm: tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain
     0.0016   15.2   0.5      0.002   14.8   0.3    1.1  1  TIGR01988 Ubi-OHases: ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family
     0.0037   13.8   0.1     0.0051   13.3   0.1    1.2  1  TIGR02733 desat_CrtD: C-3',4' desaturase CrtD
  ------ inclusion threshold ------
      0.021   11.4   1.3      0.034   10.7   0.9    1.3  1  TIGR02028 ChlP: geranylgeranyl reductase
      0.025   11.1   3.9      0.042   10.3   2.7    1.3  1  TIGR02734 crtI_fam: phytoene desaturase
      0.033   11.0   0.8      0.046   10.5   0.5    1.2  1  TIGR02023 BchP-ChlP: geranylgeranyl reductase
      0.038   10.2   2.0      0.055    9.6   1.4    1.1  1  TIGR03997 mycofact_OYE_2: mycofactocin system FadH/OYE family oxidoreductase 2
      0.046   10.6   2.7      0.031   11.2   0.8    1.4  2  TIGR02352 thiamin_ThiO: glycine oxidase ThiO
      0.046   11.2   1.6      0.084   10.4   1.1    1.3  1  TIGR02032 GG-red-SF: geranylgeranyl reductase family
       0.14    9.0   2.6      0.063   10.2   0.4    1.4  2  TIGR03364 HpnW_proposed: FAD dependent oxidoreductase TIGR03364


Domain annotation for each model (and alignments):
>> TIGR03467  HpnE: squalene-associated FAD-dependent desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.0   3.4     1e-07   3.9e-05       1      38 [.      14      51 ..      14      62 .. 0.87
   2 ?    3.5   0.0     0.021       7.9     214     251 ..     156     193 ..     151     220 .. 0.71

  Alignments for each domain:
  == domain 1    score: 21.0 bits;  conditional E-value: 1e-07
   TIGR03467  1 vvvvGgGlAGLaAAveLaraGvrvtllEarrq.lGGRar 38
                v+vvGgG+ G +AA++La + + vtl++ +r+  GGRa+
  MMETSP1137-20121227|3945_1 14 VAVVGGGICGASAAAALAGN-LTVTLFDQGRRgPGGRAS 51
                89******************.******9876538***95 PP

  == domain 2    score: 3.5 bits;  conditional E-value: 0.021
   TIGR03467 214 aarylesrggevrlgtrvreleasaggiralve.aaeet 251
                 a  +l++ g +vr g+rv +++ s+ g ++l++ ++++ 
  MMETSP1137-20121227|3945_1 156 ACGVLSESGTHVRRGVRVASISRSESG-TWLLHgTSGDA 193
                 778899******************999.55555244333 PP

>> TIGR03197  MnmC_Cterm: tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   1.0   7.4e-06    0.0028       1      40 [.      13      52 ..      13      59 .. 0.84
   2 ?   -2.2   0.0      0.97   3.6e+02     164     193 ..     167     197 ..     156     213 .. 0.73

  Alignments for each domain:
  == domain 1    score: 14.6 bits;  conditional E-value: 7.4e-06
   TIGR03197  1 kvavIGaGiAgaalalsLarrGvqvtllek.deklaqgASg 40
                +vav+G+Gi ga++a +La   + vtl+++ +  ++  AS+
  MMETSP1137-20121227|3945_1 13 RVAVVGGGICGASAAAALAG-NLTVTLFDQgRRGPGGRASH 52
                59****************97.59******934568888876 PP

  == domain 2    score: -2.2 bits;  conditional E-value: 0.97
   TIGR03197 164 lhfnteitslerdaeg.Wqllsengevlaas 193
                 ++ + +++s++r+++g W l+ ++g+   ++
  MMETSP1137-20121227|3945_1 167 VRRGVRVASISRSESGtWLLHGTSGDAAFHD 197
                 5667789999999998899998888876555 PP

>> TIGR01988  Ubi-OHases: ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.3   5.5e-06     0.002       2      33 ..      14      43 ..      13      59 .. 0.86

  Alignments for each domain:
  == domain 1    score: 14.8 bits;  conditional E-value: 5.5e-06
   TIGR01988  2 ivIvGgGlvGlalAlaLassadlkvalveaka 33
                +++vGgG+ G++ A+aLa  ++l v+l+++ +
  MMETSP1137-20121227|3945_1 14 VAVVGGGICGASAAAALA--GNLTVTLFDQGR 43
                89****************..568****99865 PP

>> TIGR02733  desat_CrtD: C-3',4' desaturase CrtD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   0.1   1.4e-05    0.0051       3      61 ..      13      68 ..      11      98 .. 0.80

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 1.4e-05
   TIGR02733  3 svvviGaGiaGltaaallakrGlevtlleaaaq.vGGCastfkrrgfifdvGatqvaGle 61
                +v v+G+Gi G  aaa la + l+vtl+++    +GG as    r+ i+  G t  a le
  MMETSP1137-20121227|3945_1 13 RVAVVGGGICGASAAAALAGN-LTVTLFDQGRRgPGGRAS---HRSVILQRGQTGEAPLE 68
                699***************975.9******97652677776...35556666666555555 PP

>> TIGR02028  ChlP: geranylgeranyl reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.9   9.2e-05     0.034       1      22 [.      12      33 ..      12      48 .. 0.84

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 9.2e-05
   TIGR02028  1 lrvavvgggpagasaaetlaka 22
                +rvavvggg +gasaa +la  
  MMETSP1137-20121227|3945_1 12 VRVAVVGGGICGASAAAALAGN 33
                59*****************954 PP

>> TIGR02734  crtI_fam: phytoene desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   2.7   0.00011     0.042       1      39 [.      14      52 ..      14      60 .. 0.88

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 0.00011
   TIGR02734  1 avViGaGlgGLAlAirLaaaGievtvlek.rdkpGGRagv 39
                + V+G+G+ G ++A+ La++  +vt++++ r  pGGRa+ 
  MMETSP1137-20121227|3945_1 14 VAVVGGGICGASAAAALAGN-LTVTLFDQgRRGPGGRASH 52
                57**************9876.89****995678*****85 PP

>> TIGR02023  BchP-ChlP: geranylgeranyl reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.5   0.00012     0.046       2      30 ..      13      40 ..      12      56 .. 0.79

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 0.00012
   TIGR02023  2 dvlviGggpsGaaaaetLakagieville 30
                +v+v+Ggg  Ga+aa  La  +  v l++
  MMETSP1137-20121227|3945_1 13 RVAVVGGGICGASAAAALAG-NLTVTLFD 40
                8*****************95.45555555 PP

>> TIGR03997  mycofact_OYE_2: mycofactocin system FadH/OYE family oxidoreductase 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   1.4   0.00015     0.055     376     427 ..       8      59 ..       2      69 .. 0.75

  Alignments for each domain:
  == domain 1    score: 9.6 bits;  conditional E-value: 0.00015
   TIGR03997 376 arrrkkvlvvGgGPaGleaaataarrG.hrvtllereee.lGGqvklaaklpgr 427
                 a+ + +v vvGgG  G +aaa  a  G  +vtl++++++ +GG+    + + +r
  MMETSP1137-20121227|3945_1   8 ATDSVRVAVVGGGICGASAAA--ALAGnLTVTLFDQGRRgPGGRASHRSVILQR 59 
                 555689**********88875..4444158******976489998777766665 PP

>> TIGR02352  thiamin_ThiO: glycine oxidase ThiO
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.8   8.4e-05     0.031       1      38 [.      14      52 ..      14      54 .. 0.79
   2 ?   -3.6   0.0       2.6   9.7e+02     163     197 ..     162     196 ..     158     207 .. 0.72

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 8.4e-05
   TIGR02352  1 vlviGgGviGlsvAveLakrghkvtllekd..evgsgAsk 38
                v+v+GgG+ G s A  La  +  vtl++++    g++As+
  MMETSP1137-20121227|3945_1 14 VAVVGGGICGASAAAALA-GNLTVTLFDQGrrGPGGRASH 52
                79**********999887.5799*****983333566665 PP

  == domain 2    score: -3.6 bits;  conditional E-value: 2.6
   TIGR02352 163 klGveiieevevqeieargekvtavktssekvqad 197
                 ++G ++++ v v +i +++  +  + + s++ +++
  MMETSP1137-20121227|3945_1 162 ESGTHVRRGVRVASISRSESGTWLLHGTSGDAAFH 196
                 56777777788888888777777777777766655 PP

>> TIGR02032  GG-red-SF: geranylgeranyl reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   1.1   0.00022     0.084       3      33 ..      14      43 ..      13      47 .. 0.91

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 0.00022
   TIGR02032  3 vvvvGaGpaGssaAlrlakkGlrVlllekke 33
                v vvG+G+ G+saA+ la + l+V l+++ +
  MMETSP1137-20121227|3945_1 14 VAVVGGGICGASAAAALAGN-LTVTLFDQGR 43
                679***************99.******9865 PP

>> TIGR03364  HpnW_proposed: FAD dependent oxidoreductase TIGR03364
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.4   0.00017     0.063       2      37 ..      13      47 ..      12      73 .. 0.82
   2 ?   -3.7   0.0       2.8     1e+03      20      33 ..     167     180 ..     161     182 .. 0.84

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 0.00017
   TIGR03364  2 dvvvvGaGivGlahAlaaarrGlkVtvierssraaG 37
                +v+vvG+Gi G + A+aa +  l+Vt++++  r  G
  MMETSP1137-20121227|3945_1 13 RVAVVGGGICGAS-AAAALAGNLTVTLFDQGRRGPG 47
                699********66.56677778*******9877655 PP

  == domain 2    score: -3.7 bits;  conditional E-value: 2.8
   TIGR03364  20 arrGlkVtvierss 33 
                 +rrG++V+ i rs+
  MMETSP1137-20121227|3945_1 167 VRRGVRVASISRSE 180
                 799*****999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (283 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       146  (0.0355924); expected 82.0 (0.02)
Passed bias filter:                      130  (0.0316919); expected 82.0 (0.02)
Passed Vit filter:                        37  (0.00901999); expected 4.1 (0.001)
Passed Fwd filter:                        11  (0.00268162); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.31u 0.17s 00:00:00.48 Elapsed: 00:00:00.45
# Mc/sec: 830.06
//
Query:       MMETSP1137-20121227|3946_1  [L=69]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (69 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        84  (0.0204778); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.16s 00:00:00.27 Elapsed: 00:00:00.28
# Mc/sec: 325.26
//
Query:       MMETSP1137-20121227|3947_1  [L=237]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (237 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        87  (0.0212092); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.16s 00:00:00.38 Elapsed: 00:00:00.53
# Mc/sec: 590.22
//
Query:       MMETSP1137-20121227|3949_1  [L=229]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (229 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        58  (0.0141394); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.16s 00:00:00.36 Elapsed: 00:00:00.48
# Mc/sec: 629.70
//
Query:       MMETSP1137-20121227|3950_1  [L=212]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.2e-08   30.9   0.4    7.3e-08   30.4   0.3    1.2  1  TIGR00994 3a0901s05TIC20: chloroplast protein import component, Tic20 family


Domain annotation for each model (and alignments):
>> TIGR00994  3a0901s05TIC20: chloroplast protein import component, Tic20 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.4   0.3   1.8e-11   7.3e-08      66     264 ..      17     209 ..       6     212 .] 0.71

  Alignments for each domain:
  == domain 1    score: 30.4 bits;  conditional E-value: 1.8e-11
   TIGR00994  66 sdlllageenrlsrllPslrthkkskesaraakddfskirlPkitkkPrwwwrtlacvPyllslheswmyaevayylhPflekfdaliypilgaigrlPtwfllayfllayltvvrrkelPhflrfhvvvGmlleialqvigivsrflPla.lykGklGmyywtaiafvylflllecircalaG.vyadvPfvcdaayiqi 264
                 + + +a  +n ++r + s    +  k++  +a+ + s+  + +  + P    r+la +Py+l+    + y    y   P +       +p++++ + +P   l+  f+++     r+ +l  f+rf +   +ll+ial v g+     Pl+  +   l +     i++++++++   +     G    +vP+++daa++qi
  MMETSP1137-20121227|3950_1  17 AAFNAAFPSNVVTRAAASHT--HMVKTPQSVARAVRSRAPMMRTDEAP-ALERVLATLPYVLPAIDGFAYGLYVYQNVPPIGAIAGAAFPFVASFESIPFGGLV--FFIGMSLFTRNPNLSRFVRFNIQQALLLDIALIVPGLFG---PLTkTFPVELQILGTNFIFYAWVLVVGYALFSNAQGkAPDQVPLLSDAASMQI 209
                 45555555666666655533..33444555555554433333334445.568********************99*99999***9999************98886..667888889***********************9988743...33213444444444445777777776666655555514568999999999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (212 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       114  (0.0277913); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.20u 0.12s 00:00:00.32 Elapsed: 00:00:00.35
# Mc/sec: 799.48
//
Query:       MMETSP1137-20121227|3951_1  [L=260]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.5e-28   95.4   0.0      1e-27   95.1   0.0    1.1  1  TIGR02280 PaaB1: phenylacetate degradation probable enoyl-CoA hydratase PaaB
    1.6e-20   70.8   0.0    1.8e-20   70.7   0.0    1.1  1  TIGR02437 FadB: fatty oxidation complex, alpha subunit FadB
    6.2e-17   59.8   0.0      9e-17   59.3   0.0    1.3  1  TIGR01929 menB: naphthoate synthase
    1.5e-16   58.3   0.0      2e-16   57.9   0.0    1.1  1  TIGR03210 badI: 2-ketocyclohexanecarboxyl-CoA hydrolase
    1.7e-15   54.8   0.0    2.3e-15   54.4   0.0    1.1  1  TIGR03189 dienoyl_CoA_hyt: cyclohexa-1,5-dienecarbonyl-CoA hydratase
    1.2e-14   51.2   0.0    1.3e-14   51.1   0.0    1.0  1  TIGR02441 fa_ox_alpha_mit: fatty acid oxidation complex, alpha subunit, mitochondrial
    1.9e-12   44.1   0.0    2.1e-12   44.0   0.0    1.0  1  TIGR02440 FadJ: fatty oxidation complex, alpha subunit FadJ
    0.00025   18.1   0.0    0.00036   17.6   0.0    1.1  1  TIGR03200 dearomat_oah: 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase


Domain annotation for each model (and alignments):
>> TIGR02280  PaaB1: phenylacetate degradation probable enoyl-CoA hydratase PaaB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.1   0.0     2e-30     1e-27       8     196 ..       2     190 ..       1     221 [. 0.92

  Alignments for each domain:
  == domain 1    score: 95.1 bits;  conditional E-value: 2e-30
   TIGR02280   8 gvlrltlnrpdklnsfteemhaelaealerverdd.vrallltGaGrGfcaGqdlsernvtkgaapdlGetvekfynplvrrlaalpkpvvvavnGvaaGaGanlalagdivlaaesakfiqafaklGlipdsGGtwllprlvGrarakglallgekldaetaaewGliwqvvddealadevqalaahla 196
                 gv++l +n p+kln+++ +m +++++ +e   +d  v+a +ltG+G  ++aG d +   ++  ++  l + +    + l  ++   pkp+ +avnG a Ga  + a  +d ++a+  a+f   faklGl+p+   +  + r++G   a  +   g kl+a++a + G+i  vv++e+l +  qa a++  
  MMETSP1137-20121227|3951_1   2 GVATLRFNEPKKLNAWSSKMMSDFKQEMEATASDPdVQATILTGTGNYYSAGVDXASM-IRVAPPRKLLNELAVKNQALFDLFLDYPKPIFAAVNGPAVGAPVTSATLCDGIFASPGATFHTPFAKLGLVPEGCSSVWFERKMGAEMADEMLNKGRKLSADEAFKAGMIDGVVAEEELLERTQAHAEKWV 190
                 89***************************9999977******************9875.5555666777778888899******************************************************9999999*********************************************998864 PP

>> TIGR02437  FadB: fatty oxidation complex, alpha subunit FadB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.7   0.0   3.6e-23   1.8e-20      16     207 ..       2     192 ..       1     230 [. 0.91

  Alignments for each domain:
  == domain 1    score: 70.7 bits;  conditional E-value: 3.6e-23
   TIGR02437  16 giaelvfdapgsvnkldratlasldkaldalkaqsdlkgllltsdkdafivGaditeflelfakpeeellqwleeansvfnkledlpvptvaavkGfalGGGlevvlatdfriadktakiGlpetklGilpGfGGtvrlprliGadsaleiiaaGkevraedalkvglvdavvkaekleaaalqllkdaine 207
                 g+a l f+ p  +n    + ++++++ ++a  ++ d+++ +lt   + +  G d + ++   a p + l++   + +++f+ + d p p  aav+G a+G  +     +d   a++ a    p +klG++p    +v + r +Ga+ a e++ +G++  a++a+k g++d+vv+ e+l + + +  ++ ++e
  MMETSP1137-20121227|3951_1   2 GVATLRFNEPKKLNAWSSKMMSDFKQEMEATASDPDVQATILTGTGNYYSAGVDXASMIR-VAPPRKLLNELAVKNQALFDLFLDYPKPIFAAVNGPAVGAPVTSATLCDGIFASPGATFHTPFAKLGLVPEGCSSVWFERKMGAEMADEMLNKGRKLSADEAFKAGMIDGVVAEEELLERTQAHAEKWVSE 192
                 899*****************************************************9986.57788888888888889**************************************************************************************************9988766665555554 PP

>> TIGR01929  menB: naphthoate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.3   0.0   1.8e-19     9e-17      12     199 ..       2     189 ..       1     225 [. 0.82

  Alignments for each domain:
  == domain 1    score: 59.3 bits;  conditional E-value: 1.8e-19
   TIGR01929  12 aiakiaidrpkvrnafrpktvdellealddaredsdiGvviltGaGdkafcsGGdqkvrgksGykdesGesrlnvlevqr.....lirtlpkpvialvnGyaiGGGhvlhvvcdltiasenarfgqtgpkvGsfdgGyGsaylarivGqkkareifflcrqydaeeaekmGlvnavvelaeleketvewarei 199
                 ++a + ++ pk +na+  k ++++ + ++ +  d+d+   iltG+G+  + +G d         + +  ++ ln l v+      l    pkp+ a vnG a+G   +   +cd   as  a f    +k+G    G  s ++ r +G  +a e+   +r+ +a ea k G+++ vv  +el + t   a++ 
  MMETSP1137-20121227|3951_1   2 GVATLRFNEPKKLNAWSSKMMSDFKQEMEATASDPDVQATILTGTGNY-YSAGVDXAS----MIRVAPPRKLLNELAVKNqalfdLFLDYPKPIFAAVNGPAVGAPVTSATLCDGIFASPGATFHTPFAKLGLVPEGCSSVWFERKMGAEMADEMLNKGRKLSADEAFKAGMIDGVVAEEELLERTQAHAEKW 189
                 578899***************************************975.667777542....2333334444444444430001045679***************************************************************************************9999877666655543 PP

>> TIGR03210  badI: 2-ketocyclohexanecarboxyl-CoA hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.9   0.0   3.9e-19     2e-16      11     195 ..       2     192 ..       1     211 [. 0.89

  Alignments for each domain:
  == domain 1    score: 57.9 bits;  conditional E-value: 3.9e-19
   TIGR03210  11 gvatiiinraeklnafrgrtcdelikalkkagydreigvivlagagdkafctggdqsthdgnydgrgvig.lpv..eelhsairdvakpviarvqgyaigggnvlvticdltiasekavlgqvgpkvgsvdpgygtallarvvgekkareiwylcrrysakealamglvnavvphdql....daevkkwcde 195
                 gvat+  n ++klna+ ++   ++ + ++ +  d ++ + +l+g+g+  + +g d ++       r  +  l v  + l +   d +kp+ a v+g a+g     +t+cd   as  a++     k+g v  g  + ++ r +g   a e+    r+ sa+ea   g+++ vv  ++l    +a  +kw  e
  MMETSP1137-20121227|3951_1   2 GVATLRFNEPKKLNAWSSKMMSDFKQEMEATASDPDVQATILTGTGN-YYSAGVDXASMIRVAPPRKLLNeLAVknQALFDLFLDYPKPIFAAVNGPAVGAPVTSATLCDGIFASPGATFHTPFAKLGLVPEGCSSVWFERKMGAEMADEMLNKGRKLSADEAFKAGMIDGVVAEEELlertQAHAEKWVSE 192
                 99********************************************7.589999999988888888765325541156889999*******************************************************************************************99833334555556544 PP

>> TIGR03189  dienoyl_CoA_hyt: cyclohexa-1,5-dienecarbonyl-CoA hydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.4   0.0   4.6e-18   2.3e-15      14     178 ..       6     177 ..       2     198 .. 0.83

  Alignments for each domain:
  == domain 1    score: 54.4 bits;  conditional E-value: 4.6e-18
   TIGR03189  14 lrlarpk.anivdaamiaalraalgealeaaalravlldaegphfsfgasveehm....pdqcaamlksl.hklviemldspvpilvavrgqclggglevaaagnllfaapdaklgqpeiklgvfapaascl.lpervgkvaaedllysgrsidgaegariglvdavaedpe 178
                 lr+  pk  n   ++m++ +++ +  + +++ ++a +l   g ++s g   +  +    p +  + l+    +l   +ld+p pi+ av g  +g  +  a+  + +fa+p+a +  p  klg+    +s + +  ++g   a+++l  gr ++++e+++ g++d v+ + e
  MMETSP1137-20121227|3951_1   6 LRFNEPKkLNAWSSKMMSDFKQEMEATASDPDVQATILTGTGNYYSAGVDXASMIrvapPRKLLNELAVKnQALFDLFLDYPKPIFAAVNGPAVGAPVTSATLCDGIFASPGATFHTPFAKLGLVPEGCSSVwFERKMGAEMADEMLNKGRKLSADEAFKAGMIDGVVAEEE 177
                 7888886269999**********************************97666544222244444444433156777789********************************************998776666155669***************************9887655 PP

>> TIGR02441  fa_ox_alpha_mit: fatty acid oxidation complex, alpha subunit, mitochondrial
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.1   0.0   2.5e-17   1.3e-14      22     197 ..       2     174 ..       1     214 [. 0.93

  Alignments for each domain:
  == domain 1    score: 51.1 bits;  conditional E-value: 2.5e-17
   TIGR02441  22 dvavvkidspnskvntlskelsaefkevldeletneavksavlisskpgsfvaGadi.dmlkacktaeevtqlsreaqklleklekskkpivaaisGsclGGGlelalachyriatkdkktllglpevllGllpGaGgtqrlpklvsvpaaldleltGkkikadrakklGlvdrlvd 197
                 +va ++++ p  k n+ s++++++fk+ ++   +++ v++ + +++  + + aG d  +m++     +  ++l+ + q l++ +    kpi aa++G  +G  +  a  c+   a     + + +p   lGl+p + +++ + + ++ + a ++   G+k+ ad a k G++d +v 
  MMETSP1137-20121227|3951_1   2 GVATLRFNEPK-KLNAWSSKMMSDFKQEMEATASDPDVQATI-LTGTGNYYSAGVDXaSMIRVAPPRKLLNELAVKNQALFDLFLDYPKPIFAAVNGPAVGAPVTSATLCDGIFASPG--ATFHTPFAKLGLVPEGCSSVWFERKMGAEMADEMLNKGRKLSADEAFKAGMIDGVVA 174
                 69999****96.9*************************9775.67899********637****************************************************9888764..5789*************************************************9985 PP

>> TIGR02440  FadJ: fatty oxidation complex, alpha subunit FadJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.0   0.0   4.1e-15   2.1e-12      16     208 ..       8     197 ..       1     233 [. 0.88

  Alignments for each domain:
  == domain 1    score: 44.0 bits;  conditional E-value: 4.1e-15
   TIGR02440  16 idvpgeklntlkaefadqvaeilkqlkekkelrglvlvsgkpdsfiagadi.smlaacktadeakalaqkgqellaelealpikvvaaihgaclggglelalachsrvcsdddktvlglpevqlgllpgsggtqrlprlvgvskaldmiltgkqlrakqalklglvddvvpksilldvavelakkgklkrkals 208
                 ++ p +kln+  +++ ++ ++ ++   ++++++  +l +g  + + ag d  sm+      +  + la k q l+  +  +p ++ aa+ g+ +g  +  a  c +   s    +++  p  +lgl+p +  +  + r +g   a +m+  g++l a +a k g++d vv ++ ll+ +  +a k   + +++ 
  MMETSP1137-20121227|3951_1   8 FNEP-KKLNAWSSKMMSDFKQEMEATASDPDVQATIL-TGTGNYYSAGVDXaSMIRVAPPRKLLNELAVKNQALFDLFLDYPKPIFAAVNGPAVGAPVTSATLCDGIFASP--GATFHTPFAKLGLVPEGCSSVWFERKMGAEMADEMLNKGRKLSADEAFKAGMIDGVVAEEELLERTQAHAEKWVSEGRPRQ 197
                 5444.58999999999999999999********9765.6888999****963799999999999****************************************9977764..456789**********************************************************99888887766666644 PP

>> TIGR03200  dearomat_oah: 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.0     7e-07   0.00036      41     210 ..       6     173 ..       3     186 .. 0.88

  Alignments for each domain:
  == domain 1    score: 17.6 bits;  conditional E-value: 7e-07
   TIGR03200  41 iildnpkqynsyttdmvkaiilafrrassdrdvaavvftavgdkafctggntkeyaeyyagnpqeyrqymrlfn.dmvsailgcdkpvicrvngmrigggqeigmaadlsvaqdlakfgqagpkhgsaaiggatdflplmigceqamvsgtlcepfsahkakrlgiivdvv 210
                 + +++pk+ n+++++m+      +++++sd dv+a+++t+ g+  + +g + +         p++  + + + n ++ +  l+  kp+ + vng  +g        +d   a+  a+f     k g  + g ++ ++   +g e a          sa  a + g+i  vv
  MMETSP1137-20121227|3951_1   6 LRFNEPKKLNAWSSKMMSDFKQEMEATASDPDVQATILTGTGNY-YSAGVDXASMI--RVAPPRKLLNELAVKNqALFDLFLDYPKPIFAAVNGPAVGAPVTSATLCDGIFASPGATFHTPFAKLGLVPEGCSSVWFERKMGAEMADEMLNKGRKLSADEAFKAGMIDGVV 173
                 56799*************************************74.67776666544..45678888777877772578999*******************************************************99999999998888888899999999999988877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (260 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       164  (0.0399805); expected 82.0 (0.02)
Passed bias filter:                      144  (0.0351048); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                         8  (0.00195027); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.30u 0.15s 00:00:00.44 Elapsed: 00:00:00.39
# Mc/sec: 879.93
//
Query:       MMETSP1137-20121227|3953_1  [L=222]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (222 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        61  (0.0148708); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.15s 00:00:00.35 Elapsed: 00:00:00.25
# Mc/sec: 1172.06
//
Query:       MMETSP1137-20121227|3954_1  [L=88]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (88 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        18  (0.0043881); expected 82.0 (0.02)
Passed bias filter:                       13  (0.00316919); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.15s 00:00:00.27 Elapsed: 00:00:00.31
# Mc/sec: 374.68
//
Query:       MMETSP1137-20121227|3955_1  [L=248]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (248 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       105  (0.0255973); expected 82.0 (0.02)
Passed bias filter:                      103  (0.0251097); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.11s 00:00:00.34 Elapsed: 00:00:00.37
# Mc/sec: 884.68
//
Query:       MMETSP1137-20121227|3956_1  [L=775]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
          0 1125.6   0.0          0 1125.2   0.0    1.1  1  TIGR01235 pyruv_carbox: pyruvate carboxylase
   2.2e-152  505.9   0.0   2.8e-152  505.5   0.0    1.1  1  TIGR00514 accC: acetyl-CoA carboxylase, biotin carboxylase subunit
   2.7e-137  457.1   0.0   3.4e-137  456.8   0.0    1.0  1  TIGR02712 urea_carbox: urea carboxylase
    2.4e-62  209.0   0.2    6.4e-62  207.6   0.1    1.7  1  TIGR01108 oadA: oxaloacetate decarboxylase alpha subunit
    6.8e-21   71.4   0.0    1.1e-20   70.8   0.0    1.2  1  TIGR01369 CPSaseII_lrg: carbamoyl-phosphate synthase, large subunit
    2.3e-12   44.4   0.0    3.6e-12   43.7   0.0    1.2  1  TIGR01205 D_ala_D_alaTIGR: D-alanine--D-alanine ligase
    6.7e-09   32.9   0.0    9.7e-09   32.3   0.0    1.1  1  TIGR00877 purD: phosphoribosylamine--glycine ligase
    8.8e-09   32.5   0.1    1.3e-08   31.9   0.0    1.2  1  TIGR01142 purT: phosphoribosylglycinamide formyltransferase 2
    2.5e-08   31.5   0.0    7.9e-08   29.8   0.0    1.8  1  TIGR00768 rimK_fam: alpha-L-glutamate ligases, RimK family
    2.8e-08   31.0   0.0    4.8e-08   30.3   0.0    1.3  1  TIGR02144 LysX_arch: lysine biosynthesis enzyme LysX
    1.7e-05   20.9   0.0    2.5e-05   20.3   0.0    1.1  1  TIGR02068 cya_phycin_syn: cyanophycin synthetase
     0.0091   13.1   0.3      0.036   11.2   0.0    1.9  2  TIGR02660 nifV_homocitr: homocitrate synthase
  ------ inclusion threshold ------
      0.011   12.7   0.1      0.025   11.5   0.0    1.6  2  TIGR02090 LEU1_arch: isopropylmalate/citramalate/homocitrate synthases
      0.016   12.3   0.0      0.025   11.6   0.0    1.3  1  TIGR02146 LysS_fung_arch: homocitrate synthase
      0.035   10.6   0.0      0.053   10.0   0.0    1.2  1  TIGR03909 pyrrolys_PylC: pyrrolysine biosynthesis protein PylC


Domain annotation for each model (and alignments):
>> TIGR01235  pyruv_carbox: pyruvate carboxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ! 1125.2   0.0         0         0       1     744 [.      50     775 .]      50     775 .] 0.99

  Alignments for each domain:
  == domain 1    score: 1125.2 bits;  conditional E-value: 0
   TIGR01235   1 kvlvanrgeiairvfraanelgirtvavyseedklslhrqkadeaylvGeggqlaPveaylsideiirvakknkvdaihPGyGflsensefadkvekaGivfiGPkaevldqlGdkvaarelaikagvPvvPgtdgpvetleevldfakaiGyPvilkaayGGGGrGmrvvrseeevadaferakseakaafGndevyveklierpkhievqllgdkaGnvvhlferdcsvqrrhqkvvevaPakslsrevrdklaeaavklakevnyinaGtveflvdedt.kfyfievnpriqvehtvteeitGidivkaqikvaeGaslpskklglpeqediktkGyaiqcrvttedPakdflPdtGrievyrsaeGfGvrldggnayaGaiispyydsllvkvsasastleeaaakmvralrefrirGvktnipfleavlenekflegsydtsfidetPelfqlvkskdratklltyladvtvnG.sielkkklkpleskprvvkleadqspvkrGtkqildekGpeefakavreqksvlltdttfrdahqsllatrvrthdlakiapttahalaelfslevwGGatfdvalrflkedPwerledlrkevPnilfqmllrganavgytnyPdnvvkkfvkqaaqsGidifrvfdslnylenlklgvdavkeagkvveaaicytGdildkakkkydlkyytelaeelekaGahilaikdmaGllkPaaaklliaalrekt.dlPihlhthdtsG 744
                 k+l anrgeiair+fraa+el+i+tva++s+ed  slhr+k de++l+G g   +Pv+ayl+ +ei+++a k++vdaihPGyGflsen++f++ +e+aGi f+GP+++v++++Gdk +ar la + +vPvvPgt+  v+t++++++f+++ G+Pvi+kaa+GGGGrGmrvvrs +e++++f ra+sea +afGn++v++e++++ p+hie+q+lgd   + vhlferdcsvqrrhqkvve aPa  l+++v ++l ++av++   ++yinaGtveflvd +t ++yfievnpriqvehtvte+itG+d+v++qi++a+G+ l+  +lgl  q++i  +Gyaiq+rvttedP +df PdtGr++v+r aeGfG+rldggnay+Ga isp+yds+l+k++ sa +++ a  k+ ral e rirGvktnipf+++vl++++f  g+ +tsfi etPelf++  +++r++kll+yl+d++vnG s++ +  +   +++p  +k + +  p ++G+kq+l+ekGp++fakavre++++l+tdtt+rdahqsllatrvrt dl+ iap+tahala  +s+e+wGGatfdv+lrfl+e+Pwerl+++r++vPn++fqmllrganavgytnyPdn              d+fr+fdslny++nlklgvdav  ag+vveaai+ytGdi  ++k+ky ++yy+ela++l+    h+laikdmaGllkPaaa +l++alr +   lPih+hthdt+G
  MMETSP1137-20121227|3956_1  50 KILAANRGEIAIRIFRAATELDIKTVAIFSKEDFGSLHRYKDDESFLIGTG--RSPVGAYLAAEEIVELAVKQNVDAIHPGYGFLSENTKFVSLCEQAGIAFVGPPSKVIQRFGDKTEARALAGEYNVPVVPGTEFAVTTVDDAKKFCADCGFPVIIKAAFGGGGRGMRVVRSADELEENFLRASSEALSAFGNGSVFIERYVDSPRHIEIQILGDGT-DTVHLFERDCSVQRRHQKVVETAPAIGLPDDVTQALYADAVRICSGAGYINAGTVEFLVDPKTnQHYFIEVNPRIQVEHTVTEVITGVDLVQSQIRIAAGQKLK--ELGLS-QDKISKRGYAIQARVTTEDPMHDFRPDTGRLQVWRPAEGFGIRLDGGNAYSGATISPHYDSMLMKLTGSALSFDGASDKVARALSETRIRGVKTNIPFILNVLRHPQFKSGKATTSFIGETPELFNFEFRQNRGQKLLNYLGDLVVNGrSVQGALGPVTPRVEPLLPKETPHGAP-PKGLKQVLTEKGPAGFAKAVRENRGLLITDTTWRDAHQSLLATRVRTKDLLAIAPATAHALAPCYSIENWGGATFDVCLRFLRECPWERLAQMREQVPNVPFQMLLRGANAVGYTNYPDN--------------DVFRIFDSLNYMDNLKLGVDAVGAAGGVVEAAISYTGDITCPTKTKYTVDYYLELARQLVDYNIHVLAIKDMAGLLKPAAATMLVGALRSEFpHLPIHVHTHDTAG 775
                 79*************************************************..9******************************************************************************************************************************************************************86.679*********************************************************98769**************************************9..****9.****************************************************************************************************************************************************989999999999999**9999999998.***********************************************************************************************************************9..............99*****************************************************************************************99***********98 PP

>> TIGR00514  accC: acetyl-CoA carboxylase, biotin carboxylase subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  505.5   0.0    1e-154  2.8e-152       2     443 ..      48     494 ..      47     499 .. 0.97

  Alignments for each domain:
  == domain 1    score: 505.5 bits;  conditional E-value: 1e-154
   TIGR00514   2 ldkilianrGeialrilrackelGiktvavystadkdalhvkladeavciGeaas.aksylnipniiaaaeitgadaihpGyGflsenadfaelveesgltfiGpsaeairlmGdkvsaketmkkagvpvvpGsdGlvedveeaveiakeiGypviikataGGGGrGlrvvreedelvkslkaakaeakaafnndgvylekfienprhveiqvladkyGnvvylgerdcsiqrrkqklleeapspaltselrkkiGeaavkaaksigytgaGtveflld.kegefyflemntriqvehpvtemvtgvdlikeqirvakGekls...lkqedvklkGhaiecrinaedpsknflpspGriksylppgGlgvrvds.avysgyavppyydsliaklivygktreeaiarmkralkeliieGikttidfhkliledekfkkgevdikylek 443
                 + kil anrGeia+ri+ra+ el iktva++s+ d   lh    de++ iG   s + +yl   +i+  a  +++daihpGyGflsen++f++l+e++g++f+Gp +++i+  Gdk+ a++++ + +vpvvpG++  v +v++a++   + G+pviika+ GGGGrG+rvvr+ del++ +  a +ea +af+n +v++e++++ prh+eiq+l+d   ++v+l erdcs+qrr+qk++e ap+ +l +++ +++   av+++  +gy+ aGtvefl+d k +++yf+e+n riqveh+vte++tgvdl++ qir+a+G+kl+   l q+++  +G+ai+ r+ +edp+++f+p  Gr++ + p+ G+g+r+d+ ++ysg ++ p+yds++ kl   + + + a +++ ral+e+ i G+kt+i+f   +l +++fk+g+  ++++ +
  MMETSP1137-20121227|3956_1  48 IRKILAANRGEIAIRIFRAATELDIKTVAIFSKEDFGSLHRYKDDESFLIGTGRSpVGAYLAAEEIVELAVKQNVDAIHPGYGFLSENTKFVSLCEQAGIAFVGPPSKVIQRFGDKTEARALAGEYNVPVVPGTEFAVTTVDDAKKFCADCGFPVIIKAAFGGGGRGMRVVRSADELEENFLRASSEALSAFGNGSVFIERYVDSPRHIEIQILGDGT-DTVHLFERDCSVQRRHQKVVETAPAIGLPDDVTQALYADAVRICSGAGYINAGTVEFLVDpKTNQHYFIEVNPRIQVEHTVTEVITGVDLVQSQIRIAAGQKLKelgLSQDKISKRGYAIQARVTTEDPMHDFRPDTGRLQVWRPAEGFGIRLDGgNAYSGATISPHYDSMLMKLTGSALSFDGASDKVARALSETRIRGVKTNIPFILNVLRHPQFKSGKATTSFIGE 494
                 579************************************************98874689*************************************************************************************************************************************************************86.79**********************************************************45577***********************************987544489*********************************************6489********************************************************************976 PP

>> TIGR02712  urea_carbox: urea carboxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  456.8   0.0  1.2e-139  3.4e-137       2     441 ..      49     494 ..      48     500 .. 0.96

  Alignments for each domain:
  == domain 1    score: 456.8 bits;  conditional E-value: 1.2e-139
   TIGR02712   2 kkvlianrGeiavriirtlkklgirsvavysdadkasqhvkdadeavalge.ataaesylkidkileiakktgaeaiiPGyGflsenaafaeaceaagivfvGPtpeqlrklGlkhtarelaeaagvPllpGtgl.lesleealeaaeeigyPvmlkstaGGGGiGlqkvdsaeeleeafesvkrlgesffsdagvflekfvekarhvevqilGdgkGkvvalgerdCslqrrnqkvveetPaPnlpeevrekllkaaeklaeavnyrsaGtvefiydekrdefyflevntrlqvehpvteavtgldlvewmvrlaageapdldelkve..kprGaaiearvyaedPakdfqPspGlltevkfPed...vrvdt.wvekGtevsaeydPmlakiivhgkdreealeklkkaleetkvaGivtnldylksivssevfrkakvstrllek 441
                 +k+l anrGeia+ri r++ +l+i++va++s+ d  s+h  + de+  +g   +   +yl++++i+e+a k++++ai+PGyGflsen++f + ce+agi+fvGP ++ ++++G k  ar+la + +vP++pGt++ ++++++a++ +++ g+Pv++k++ GGGG G++ v+sa+elee+f +    + s f++  vf+e++v++ rh+e+qilGdg+  +v l erdCs+qrr+qkvve +Pa +lp++v ++l++ a+++++   y  aGtvef+ d+k ++ yf+evn r+qveh vte +tg+dlv+  +r+aag++ ++  l+++  ++rG ai+arv +edP++df+P +G+l  v  P +   +r+d+     G+ +s++yd ml k+   + + + a +k+ +al+et++ G++tn+ ++ +++ + +f+++k +t+++ +
  MMETSP1137-20121227|3956_1  49 RKILAANRGEIAIRIFRAATELDIKTVAIFSKEDFGSLHRYKDDESFLIGTgRSPVGAYLAAEEIVELAVKQNVDAIHPGYGFLSENTKFVSLCEQAGIAFVGPPSKVIQRFGDKTEARALAGEYNVPVVPGTEFaVTTVDDAKKFCADCGFPVIIKAAFGGGGRGMRVVRSADELEENFLRASSEALSAFGNGSVFIERYVDSPRHIEIQILGDGTD-TVHLFERDCSVQRRHQKVVETAPAIGLPDDVTQALYADAVRICSGAGYINAGTVEFLVDPKTNQHYFIEVNPRIQVEHTVTEVITGVDLVQSQIRIAAGQKLKELGLSQDkiSKRGYAIQARVTTEDPMHDFRPDTGRLQ-VWRPAEgfgIRLDGgNAYSGATISPHYDSMLMKLTGSALSFDGASDKVARALSETRIRGVKTNIPFILNVLRHPQFKSGKATTSFIGE 494
                 58***********************************************98356689****************************************************************************975899*****************************************************************************85.67899**********************************************************************************************999887777765667************************96.666666689****736789****************************************************************99865 PP

>> TIGR01108  oadA: oxaloacetate decarboxylase alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  207.6   0.1   2.4e-64   6.4e-62       1     204 [.     577     775 .]     577     775 .] 0.94

  Alignments for each domain:
  == domain 1    score: 207.6 bits;  conditional E-value: 2.4e-64
   TIGR01108   1 itdvvlrdahqsllatrlrteDmLpileklDk..vgywslevWGGatfDaclrfLkedPWerLrelkkalkntklqmLLrGqnllGyrhyaDDvvekfvkkavenGldvfrifDalnDarnlkkaieavkkhgahvqgalsyt...isPv...htlekylelakellelgvDsiaikDmaGlLtPkaayeLvsalkkeve.lpvelhshattg 204
                 itd++ rdahqsllatr+rt+D+L i+ +  +     +s+e WGGatfD+clrfL+e PWerL +++++++n ++qmLLrG n +Gy +y+D+              dvfrifD+ln   nlk  ++av   g  v++a+syt   + P    +t+++ylela++l++ ++  +aikDmaGlL P aa  Lv al++e++ lp+++h+h t+g
  MMETSP1137-20121227|3956_1 577 ITDTTWRDAHQSLLATRVRTKDLLAIAPATAHalAPCYSIENWGGATFDVCLRFLRECPWERLAQMREQVPNVPFQMLLRGANAVGYTNYPDN--------------DVFRIFDSLNYMDNLKLGVDAVGAAGGVVEAAISYTgdiTCPTktkYTVDYYLELARQLVDYNIHVLAIKDMAGLLKPAAATMLVGALRSEFPhLPIHVHTHDTAG 775
                 89************************977655225789******************************************************7..............9**********************************9777667522268********************************************98**********97 PP

>> TIGR01369  CPSaseII_lrg: carbamoyl-phosphate synthase, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.8   0.0   3.8e-23   1.1e-20     107     343 ..     142     384 ..     108     386 .. 0.87

  Alignments for each domain:
  == domain 1    score: 70.8 bits;  conditional E-value: 3.8e-23
   TIGR01369 107 LekygvkllGtkveaikkaedRekFkealkeineevakse..ivesveealeaaeeigyPvivRaaftlgGtGsgiaeneeelkelv....ekalkaspikqvlvekslagwkEiEyEvvRDskdnciivcniEnlDplGvHtGdsivvaPsqtLtdkeyqllRdaslkiirelgvegecnvqfaldPeskryvviEvnpRvsRssALAskAtGyPiAkvaaklavGysLdel...kndvtketvA 343
                  e+ g+  +G + ++i++  d+ + +++  e n++v  ++  +v++v++a ++ ++ g+Pvi++aaf  gG+G  ++++++el+e+     ++al+a    +v +e+++   + iE+ ++ D +d+   v   E    +       +  aP+  L d+  q l   +++i +  g + +  v f +dP++++ + iEvnpR+     +    tG  + +   ++a G +L+el   +++++k+ +A
  MMETSP1137-20121227|3956_1 142 CEQAGIAFVGPPSKVIQRFGDKTEARALAGEYNVPVVPGTefAVTTVDDAKKFCADCGFPVIIKAAFGGGGRGMRVVRSADELEENFlrasSEALSAFGNGSVFIERYVDSPRHIEIQILGDGTDT---VHLFERDCSVQRRHQKVVETAPAIGLPDDVTQALYADAVRICSGAGYINAGTVEFLVDPKTNQHYFIEVNPRIQVEHTVTEVITGVDLVQSQIRIAAGQKLKELglsQDKISKRGYA 384
                 467899*****************************9876423899**********************************99999875221156777777899**********************97...55567666666666777889***********************************************************************************94445666666655 PP

>> TIGR01205  D_ala_D_alaTIGR: D-alanine--D-alanine ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.7   0.0   1.3e-14   3.6e-12      69     285 ..     122     338 ..      64     339 .. 0.81

  Alignments for each domain:
  == domain 1    score: 43.7 bits;  conditional E-value: 1.3e-14
   TIGR01205  69 fpvlH...GrdGEDGtiqglLellgipyvGsgvlaSalsmdKlltKlllkalglpvadyavlerkeekseeaekekleklglpvivKpareGSSvGvskvkseeeleealeeafey......deevlveeai.kgrelevsvlekeealpiieiveekekedFydYeaKYldgsaelvipaelseeeeekikelalkaykalgcrglaRvDffleke.geiylnEiNt 285
                 + ++H   G   E+ +  +l e +gi++vG+         dK   + l+ + ++pv++ + +     + ++  k+  ++ g+pvi+K+a  G   G+ +v+s +elee + +a +       + +v++e+++ + r +e+ +l+++  +  ++  e ++     +  ++  ++  e++  + l++ + +++ + a+++++  g  + + v+f+++ + ++ y+ E+N+
  MMETSP1137-20121227|3956_1 122 VDAIHpgyGFLSENTKFVSLCEQAGIAFVGPPSKVIQRFGDKTEARALAGEYNVPVVPGTEFA--VTTVDD-AKKFCADCGFPVIIKAAFGGGGRGMRVVRSADELEENFLRASSEalsafgNGSVFIERYVdSPRHIEIQILGDG--TDTVHLFERDC-----SV-QRRHQKVVETAPAIGLPDDVTQALYADAVRICSGAGYINAGTVEFLVDPKtNQHYFIEVNP 338
                 455662224555999999*************999999999*******************9994..333333.3457789***************************9977655443111233679******62679********44..58899988888.....32.333344466677777*********************************************8 PP

>> TIGR00877  purD: phosphoribosylamine--glycine ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.3   0.0   3.6e-11   9.7e-09      53     210 ..     110     270 ..      89     287 .. 0.80

  Alignments for each domain:
  == domain 1    score: 32.3 bits;  conditional E-value: 3.6e-11
   TIGR00877  53 leevvefakkkkidlavigpEapLvl..GlvdaleeaGikvfGpkkeAaklEasKafakdllkkagiptaeyevf..tepeeakeyieekgapaivvkadgLaaGKgvivvkdeeeal....kaveeilekkkfgeagekvviEefleG.eEvsllalvdgktvvpl 210
                  ee+ve+a k+++d +  g   +L++    v+  e+aGi  +Gp  +  +  ++K+ a++l  ++++p    ++f  t +++ak++  + g+p +++ka    +G+g  vv++ +e +    +a +e+l++  fg+++  v iE +++    + ++ l dg++ v l
  MMETSP1137-20121227|3956_1 110 AEEIVELAVKQNVDAIHPGYG-FLSEntKFVSLCEQAGIAFVGPPSKVIQRFGDKTEARALAGEYNVPVVPGTEFavTTVDDAKKFCADCGFP-VIIKAAFGGGGRGMRVVRSADELEenflRASSEALSA--FGNGS--VFIERYVDSpRHIEIQILGDGTDTVHL 270
                 6899**********9988876.454312589*************************************765554422899************9.999999889********77666550001555666665..76665..******986245777777787776655 PP

>> TIGR01142  purT: phosphoribosylglycinamide formyltransferase 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.9   0.0   4.9e-11   1.3e-08      42     294 ..     101     362 ..      62     394 .. 0.74

  Alignments for each domain:
  == domain 1    score: 31.9 bits;  conditional E-value: 4.9e-11
   TIGR01142  42 rsvvvdmlDadalravierekPdfivpeieaia..tdaLlelekegyevv.Pnaratkltmnreglrrlaaeelglpt.akyef.adsleeleeavekiGfPcvvkpvmsssGkGqsvvkgpediekaWeeakegarg..saerviveefidfdveitlltvravdgvvefcaPiGhrqedgdykesWqPq.elsekaleeakeiakrvvdaLGGlGlfGvelfv..kgdevifsevsprPhdtglvtlisqelsefelhvra 294
                 rs v   l a+++ ++  +++ d+i p    ++  t+ +   e++g+  v P ++ ++   ++ + r la e   +p     ef ++++++ ++ +++ GfP+++k+  +  G+G  vv++++++e+ + +a ++a +   ++ v +e ++d    i + ++    + v++ +    +q + ++     P+  l +  +++ ++ a r+ +  G      ve++v  k ++ +f ev pr +    vt +   +   + ++r 
  MMETSP1137-20121227|3956_1 101 RSPVGAYLAAEEIVELAVKQNVDAIHPGYGFLSenTKFVSLCEQAGIAFVgPPSKVIQRFGDKTEARALAGEYN-VPVvPGTEFaVTTVDDAKKFCADCGFPVIIKAAFGGGGRGMRVVRSADELEENFLRASSEALSafGNGSVFIERYVDSPRHIEIQILGDGTDTVHLFERDCSVQRRHQKVVETAPAiGLPDDVTQALYADAVRICSGAGYINAGTVEFLVdpKTNQHYFIEVNPRIQVEHTVTEVITGVDLVQSQIRI 362
                 67777888888888888888888888877766411444555688896544489999999999999999887654.33303345515899*******************************************988766226889********988887766665555455555555555555544444444267777777777778888888888888889999844467889999999988887777666655555555555 PP

>> TIGR00768  rimK_fam: alpha-L-glutamate ligases, RimK family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.8   0.0   2.9e-10   7.9e-08      44     268 ..     118     355 ..      62     363 .. 0.71

  Alignments for each domain:
  == domain 1    score: 29.8 bits;  conditional E-value: 2.9e-10
   TIGR00768  44 alaeldvvivrivssdrglavlraleslGveviNs.sqaienagdKllssalLakaglpl.pkt.lvagseeeakklieeigfPvvlKpvfGswGklvvlvedkqeaek..llealeqlke.kykvflvQeyikksggrdiRvfVvgdevvaaiyr.ikseefrsNlarGgka..ekcelteeieelaikaakalgl.dvagiDllesed.kgllvlEvNasvefkn..sekvtgvni 268
                 +++++d++ +   + +++++   + e++G+  + + s++i++ gdK    al  ++++p+ p t + ++  ++akk+    gfPv++K +fG  G+++  v+  +e+e+  l  + e l      ++++  y++ + + +i  +  g   v   +r    ++    +   + a   + ++t++    a++++   g  ++  + +l +++ +   ++EvN+ ++ ++  +e +tgv++
  MMETSP1137-20121227|3956_1 118 VKQNVDAIHPGYGFLSENTKFVSLCEQAGIAFVGPpSKVIQRFGDKTEARALAGEYNVPVvPGTeFAVTTVDDAKKFCADCGFPVIIKAAFGGGGRGMRVVRSADELEEnfLRASSEALSAfGNGSVFIERYVDSPRHIEIQILGDGTDTVHLFERdCSVQRRHQKVVETAPAigLPDDVTQALYADAVRICSGAGYiNAGTVEFLVDPKtNQHYFIEVNPRIQVEHtvTEVITGVDL 355
                 788888888888888999999999*******99862789*******************964655156668899*******************999987666666655441133344444444458999999***99999998877777777777776333333333333333300344555555556666666555314445677766665566677777755444311445566665 PP

>> TIGR02144  LysX_arch: lysine biosynthesis enzyme LysX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.3   0.0   1.7e-10   4.8e-08      66     187 ..     140     265 ..     132     365 .. 0.79

  Alignments for each domain:
  == domain 1    score: 30.3 bits;  conditional E-value: 1.7e-10
   TIGR02144  66 alleelGvkvins.seviiacgdKvfttlkLakagvPt.Pktiva.fdkeaalklaeelGyPvvlKPveGsWGrlvskvkdkdeaea..llehkevlkgsqlklylvqEyinkpgRDiRvfviGdea 187
                  l+e++G+  + + s+vi++ gdK  + +   + +vP+ P t  a +  ++a+k   + G+Pv++K ++G  Gr +  v+++de+e   l    e+l+ +     ++  y++ p R i + ++Gd +
  MMETSP1137-20121227|3956_1 140 SLCEQAGIAFVGPpSKVIQRFGDKTEARALAGEYNVPVvPGTEFAvTTVDDAKKFCADCGFPVIIKAAFGGGGRGMRVVRSADELEEnfLRASSEALSAFGNGSVFIERYVDSP-RHIEIQILGDGT 265
                 578999*9999852789999*****************65887665166799*****************************99999763255678999999999999******99.899999999865 PP

>> TIGR02068  cya_phycin_syn: cyanophycin synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   0.0   9.1e-08   2.5e-05     213     296 ..     162     252 ..     156     269 .. 0.85

  Alignments for each domain:
  == domain 1    score: 20.3 bits;  conditional E-value: 9.1e-08
   TIGR02068 213 DkeltkklLkaaGvPvPeGt..vvqsaeeaeeaaeelGyPvvikPldGnhGrGvtiniesreeiesayeaakees......seviverfikG 296
                 Dk  ++ l  +  vPv  Gt   v ++++a++   + G+Pv+ik   G  GrG+ + ++s +e+e+ +  a+ e+       +v +er++  
  MMETSP1137-20121227|3956_1 162 DKTEARALAGEYNVPVVPGTefAVTTVDDAKKFCADCGFPVIIKAAFGGGGRGMRV-VRSADELEENFLRASSEAlsafgnGSVFIERYVDS 252
                 8888999999999**999984458899***************************99.89*********999887655666568999999875 PP

>> TIGR02660  nifV_homocitr: homocitrate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.0      0.51   1.4e+02       2      16 ..     575     589 ..     574     609 .. 0.70
   2 !   11.2   0.0   0.00013     0.036     142     197 ..     719     775 .]     707     775 .] 0.89

  Alignments for each domain:
  == domain 1    score: -0.6 bits;  conditional E-value: 0.51
   TIGR02660   2 vlinDttLRDGEqaa 16 
                 +li+Dtt RD  q+ 
  MMETSP1137-20121227|3956_1 575 LLITDTTWRDAHQSL 589
                 579*********984 PP

  == domain 2    score: 11.2 bits;  conditional E-value: 0.00013
   TIGR02660 142 eflvelaevakeagakRlRfaDtvgvldPfstyelvkalraal.elelElHaHnDlG 197
                 ++  ela+++ +  ++ l + D  g+l+P ++  lv alr+++ +l++ +H+H+  G
  MMETSP1137-20121227|3956_1 719 DYYLELARQLVDYNIHVLAIKDMAGLLKPAAATMLVGALRSEFpHLPIHVHTHDTAG 775
                 67789999999999***************************9978********9765 PP

>> TIGR02090  LEU1_arch: isopropylmalate/citramalate/homocitrate synthases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0         3   8.2e+02      15      38 ..     351     375 ..     347     387 .. 0.69
   2 ?   11.5   0.0   9.2e-05     0.025     136     195 ..     714     774 ..     704     775 .] 0.92

  Alignments for each domain:
  == domain 1    score: -3.3 bits;  conditional E-value: 3
   TIGR02090  15 PGvsltveq.kveiakkldelGvdv 38 
                  Gv+l + q ++   +kl elG+ +
  MMETSP1137-20121227|3956_1 351 TGVDLVQSQiRIAAGQKLKELGLSQ 375
                 6888876653455568999999854 PP

  == domain 2    score: 11.5 bits;  conditional E-value: 9.2e-05
   TIGR02090 136 trtdidflikvfkkaeeagadrinvadtvGvltPekmeelikklkekvk.lpvsvhchndf 195
                 t+  +d+ +++ ++ ++ +   +++ d  G l+P + + l+  l+++   lp+ vh h+  
  MMETSP1137-20121227|3956_1 714 TKYTVDYYLELARQLVDYNIHVLAIKDMAGLLKPAAATMLVGALRSEFPhLPIHVHTHDTA 774
                 67789******************************************988********965 PP

>> TIGR02146  LysS_fung_arch: homocitrate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   9.3e-05     0.025     138     195 ..     718     775 .]     702     775 .] 0.88

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 9.3e-05
   TIGR02146 138 ledLlkvvktakeagvdrvsiaDtvGvatPrrvyelvrkvkrvvpgvdieihahnDlG 195
                 +++ l++ +   + ++  ++i D  G ++P  +  lv  ++++ p ++i++h+h+  G
  MMETSP1137-20121227|3956_1 718 VDYYLELARQLVDYNIHVLAIKDMAGLLKPAAATMLVGALRSEFPHLPIHVHTHDTAG 775
                 5677777777888999999***********************************8665 PP

>> TIGR03909  pyrrolys_PylC: pyrrolysine biosynthesis protein PylC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.0   0.00019     0.053     120     182 ..     195     266 ..     182     310 .. 0.79

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 0.00019
   TIGR03909 120 kpdsefPvlvkPscesssegvriindrkeleel.lklesed.......nlvveeyleGe.svsleviGdkgn 182
                  +d++fPv++k + + +  g+r++++ +elee  l+  se        ++ +e y++ +  + ++++Gd+ +
  MMETSP1137-20121227|3956_1 195 CADCGFPVIIKAAFGGGGRGMRVVRSADELEENfLRASSEAlsafgngSVFIERYVDSPrHIEIQILGDGTD 266
                 579***************************987566655322222222678888998873578888888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (775 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       113  (0.0275475); expected 82.0 (0.02)
Passed bias filter:                      108  (0.0263286); expected 82.0 (0.02)
Passed Vit filter:                        24  (0.0058508); expected 4.1 (0.001)
Passed Fwd filter:                        15  (0.00365675); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.79u 0.17s 00:00:00.96 Elapsed: 00:00:01.21
# Mc/sec: 845.38
//
Query:       MMETSP1137-20121227|3957_1  [L=295]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      2e-12   44.4   0.0    2.9e-12   43.9   0.0    1.2  1  TIGR01179 galE: UDP-glucose 4-epimerase
    3.2e-06   24.4   0.0    4.4e-06   23.9   0.0    1.1  1  TIGR02197 heptose_epim: ADP-glyceromanno-heptose 6-epimerase
    3.3e-06   24.2   0.0    5.1e-06   23.6   0.0    1.2  1  TIGR01181 dTDP_gluc_dehyt: dTDP-glucose 4,6-dehydratase
    6.5e-05   20.0   0.0    0.00011   19.3   0.0    1.2  1  TIGR01214 rmlD: dTDP-4-dehydrorhamnose reductase


Domain annotation for each model (and alignments):
>> TIGR01179  galE: UDP-glucose 4-epimerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.9   0.0   2.9e-15   2.9e-12      50     161 ..      12     124 ..       3     134 .. 0.85

  Alignments for each domain:
  == domain 1    score: 43.9 bits;  conditional E-value: 2.9e-15
   TIGR01179  50 klvegdladkekleavleeekidaviHfaaliavgEsvkePlkYYennvvntleLleamqkag.vkkliFsssaavYg..esekvpisEesplnpinpYGrsklmvErilkdlkk 161
                  + +g ++d+e +e+++ee+++ aviH+a++++ g+s ++P k +e nv +  +Ll+++++++   +++F ss+a++g   +++ p  + ++++p n YG  k++ E +l+d+++
  MMETSP1137-20121227|3957_1  12 RIRSGLITDAEVIEELVEESEL-AVIHLASMVS-GDSETSPFKAWEVNVDAQRVLLDTLHRVSpRARFVFTSSTATFGpvAPRAPPPGDFTKQQPRNTYGFHKVVCEMMLNDYSR 124
                 5566778999999999988775.9****98765.99***********************99872569**********94345666667777788******************986 PP

>> TIGR02197  heptose_epim: ADP-glyceromanno-heptose 6-epimerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.9   0.0   4.3e-09   4.4e-06      50     150 ..      18     120 ..      12     135 .. 0.75

  Alignments for each domain:
  == domain 1    score: 23.9 bits;  conditional E-value: 4.3e-09
   TIGR02197  50 idkeellerlekeelkkveavfHegA.isdTteldgellmenNyeyskellelc..aekevkliYASSAavYGdseeefr..eekelerPlNvYgySKllfDelvr 150
                 i ++e++e+l +e   +  av+H +  +s   e+   + +e N+++ + ll++   ++ ++++++ SS a++G  +       +  +++P N+Yg+ K++ + ++ 
  MMETSP1137-20121227|3957_1  18 ITDAEVIEELVEE---SELAVIHLASmVSGDSETSPFKAWEVNVDAQRVLLDTLhrVSPRARFVFTSSTATFGPVAPRAPppGDFTKQQPRNTYGFHKVVCEMMLN 120
                 6677777777774...3446788776278888999999**************86225789*************7665554114445558*********99887766 PP

>> TIGR01181  dTDP_gluc_dehyt: dTDP-glucose 4,6-dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.6   0.0     5e-09   5.1e-06      45     167 ..       4     124 ..       3     133 .. 0.92

  Alignments for each domain:
  == domain 1    score: 23.6 bits;  conditional E-value: 5e-09
   TIGR01181  45 dledeerysfvkgdiadrelverllkeedvdavvnfaaeshvDrsisepeafietnvvGtytlleavrkelkevrllhistDevyGdlekddaeftettplaPssPysaskaasdllvrayar 167
                 d+ +++r+++  g i+d+e++e+l++e++  av+++a+    D s ++p +  e nv    +ll+++++   + r++  s    +G +        + t+ +P++ y   k   +++++ y r
  MMETSP1137-20121227|3957_1   4 DVIHDPRVRIRSGLITDAEVIEELVEESE-LAVIHLASMVSGD-SETSPFKAWEVNVDAQRVLLDTLHRVSPRARFVFTSSTATFGPVAPRAPPPGDFTKQQPRNTYGFHKVVCEMMLNDYSR 124
                 577889*********************99.79*****988877.557788899*************************************99778999999*****************99987 PP

>> TIGR01214  rmlD: dTDP-4-dehydrorhamnose reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.0     1e-07   0.00011      36     144 ..      18     128 ..       9     134 .. 0.87

  Alignments for each domain:
  == domain 1    score: 19.3 bits;  conditional E-value: 1e-07
   TIGR01214  36 ledpealeellreikPdvvvntaAytdVDkaEseaekayavNalatenlAraaarvg..allvhiSTDYvFDGekkrpYreedet..nPlnvYgqsKlaGEvavraasekali 144
                 ++d+e +eel++e +  +v++ a ++  D +E+ + ka++vN+ a ++l  + +rv   a++v+ S    F   + r   + d t   P n Yg  K++ E++  ++s + li
  MMETSP1137-20121227|3957_1  18 ITDAEVIEELVEESE-LAVIHLASMVSGD-SETSPFKAWEVNVDAQRVLLDTLHRVSprARFVFTSSTATFGPVAPRAPPPGDFTkqQPRNTYGFHKVVCEMMLNDYSRQGLI 128
                 7999*******9966.99********998.6***********************99644899*********99777766665554228***************9999988776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (295 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        98  (0.0238908); expected 82.0 (0.02)
Passed bias filter:                       98  (0.0238908); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.26u 0.14s 00:00:00.40 Elapsed: 00:00:00.40
# Mc/sec: 973.42
//
Query:       MMETSP1137-20121227|3959_1  [L=1384]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1384 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       153  (0.0372989); expected 82.0 (0.02)
Passed bias filter:                       37  (0.00901999); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.73u 0.12s 00:00:00.85 Elapsed: 00:00:01.50
# Mc/sec: 1217.82
//
Query:       MMETSP1137-20121227|3960_1  [L=966]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      0.001   15.0   0.0      0.053    9.4   0.0    2.1  2  TIGR00870 trp: transient-receptor-potential calcium channel protein


Domain annotation for each model (and alignments):
>> TIGR00870  trp: transient-receptor-potential calcium channel protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    3.6   0.0   0.00074         3      79     158 ..     380     475 ..     298     498 .. 0.70
   2 !    9.4   0.0   1.3e-05     0.053     130     160 ..     626     656 ..     551     665 .. 0.88

  Alignments for each domain:
  == domain 1    score: 3.6 bits;  conditional E-value: 0.00074
   TIGR00870  79 e.........egevGdalL.haiskelvdaveailllllkaarksltls......elandestseftkgitalilAihkqnyeivklLlekgasve 158
                 +          ++ G +lL +a++ +   av ++l ++ + ++ + + +      +l ++++    ++g t l+ A +  n ei ++L++ gas  
  MMETSP1137-20121227|3960_1 380 RwrgelddklGAKSGMTLLrYAVLARATTAVRELLPPPHELKQMDAKSRrrvldaPLTIKRENPPLFPGFTLLHHASIYGNEEIMRMLIKAGASTR 475
                 3555555555577888888334555778888888877666554433333677888999999999*****************************976 PP

  == domain 2    score: 9.4 bits;  conditional E-value: 1.3e-05
   TIGR00870 130 kgitalilAihkqnyeivklLlekgasvear 160
                  g tal+lA+ + + e+ +lL+  ga+  +r
  MMETSP1137-20121227|3960_1 626 LGATALHLAAARGDAECMRLLIGAGARTDIR 656
                 599***********************97765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (966 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        98  (0.0238908); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.59u 0.16s 00:00:00.75 Elapsed: 00:00:00.54
# Mc/sec: 2361.14
//
Query:       MMETSP1137-20121227|3961_1  [L=170]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (170 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        82  (0.0199902); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.15s 00:00:00.32 Elapsed: 00:00:00.31
# Mc/sec: 723.81
//
Query:       MMETSP1137-20121227|3962_1  [L=457]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.5e-87  292.4   0.0    1.8e-87  292.1   0.0    1.0  1  TIGR00395 leuS_arch: leucine--tRNA ligase
    2.1e-11   40.4   0.0      2e-10   37.1   0.0    2.0  1  TIGR00422 valS: valine--tRNA ligase
    5.1e-09   33.5   0.0      7e-09   33.1   0.0    1.3  1  TIGR00435 cysS: cysteine--tRNA ligase
    3.3e-08   30.0   0.0    7.6e-08   28.8   0.0    1.4  1  TIGR00392 ileS: isoleucine--tRNA ligase
      1e-07   28.3   0.0    2.3e-07   27.1   0.0    1.5  1  TIGR00396 leuS_bact: leucine--tRNA ligase
    2.8e-06   24.1   0.0    4.2e-06   23.6   0.0    1.2  1  TIGR00398 metG: methionine--tRNA ligase
    9.7e-05   19.2   0.0    0.00015   18.5   0.0    1.2  1  TIGR03447 mycothiol_MshC: cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase


Domain annotation for each model (and alignments):
>> TIGR00395  leuS_arch: leucine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  292.1   0.0   3.1e-90   1.8e-87     500     910 ..       2     452 ..       1     456 [. 0.88

  Alignments for each domain:
  == domain 1    score: 292.1 bits;  conditional E-value: 3.1e-90
   TIGR00395 500 PwdekyliesLsdstiyqayytiakllnkde.lkae.........qltdelfdyifldkddvketkipleileklreefeyfyPldlrisakdLipnhLtfyifthvaifPe..efWPrgivvnGyvllegkklskskGnlltlkeavekfGadvarlylldaaelvedadfkeseveaakkrlerlkefaeeiakksd.....levgeelsfldrwllsrlnkaikevkealenlelrkavkaalfelkkdvdyyrrrsge..nvkdvlaevleaiikLlaPfaPhlaeelyeevGkegfvseakfPevseeavdkevekaeeylrnlvrdike........iakiaaskpkkvylltse...dWkvevlkvvkelesedvkeamkkvre......eeelrkrakevaelvkkilkdekked.......elliseievlkaaaefikkevgak 910
                 Pwde +liesLsdstiy++yy +a+ll+  + +++e         q t+ ++d i+l+k    + ++ +e++ekl++e e++yP+dlr+s+kdL+pnhLt+ +++h+a++ +  e+WPrg   nG+v ++ +k+skskGn++tl  a+e++Gad++rl  +da++ +++a+++ s    ++  l+   e+       s         g ++ +ld w+++++ ++++ + e + ++++r+a+k+a++ +++++d yr  + +    ++++++  e +++++aP++Ph +ee++e+vG +g v  a++P   +e  d ++ +a +yl  l + +          ++  ++ kp++v l+ +     Wkv vl+++   ++  +k + +kv+       e +  +++k+va++  ++ +de ke+       ++ ++e  +++++ e++ +  g+ 
  MMETSP1137-20121227|3962_1   2 PWDEAFLIESLSDSTIYMSYYLVAHLLQGGNlYGKEtgpakitpeQCTEAFWDCIMLGKPYNPSLGLKKELVEKLKREIEFWYPMDLRVSGKDLVPNHLTMSLYNHAAVWADrpEMWPRGFFCNGHVQVDAEKMSKSKGNFITLSGAIEEWGADATRLTCADAGDGTDNANYNXSGRXRTILALTTEMEWLSSTLSGSGkdtklRAKGAPKVWLDAWFENEMIRLLHLTAEGYRTIRFREALKTAFYGMQDARDKYRTGTAQigALQELVQQWGEWQALMMAPITPHWCEEIWEIVGGKGCVVRARWPTPRQE--DPKISAAGQYLFGLTHALSTavvnkdkkSKGPQGPKPNQVNLYLASsfpRWKVLVLELLLAHFDAATKTVDEKVMPmfkshaELNSFNKGKQVAQFAAQM-RDEAKEKgasafalKMPFDEAAIIEENREYLGSTLGLL 452
                 9**************************986526777999999999**************999999*********************************************753389********************************************************9998888888877777776655444332233333468999********************************************986654115688999999999*******************************99888..999999999998888777766666666688888899******99987889*********99999999999999986555544445668999*****9886.55555555889998899*************99988876 PP

>> TIGR00422  valS: valine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.1   0.0   3.4e-13     2e-10     471     734 ..      77     329 ..      72     347 .. 0.75

  Alignments for each domain:
  == domain 1    score: 37.1 bits;  conditional E-value: 3.4e-13
   TIGR00422 471 kkdlkkfyptsllvtgfDIiffWvarmillslaltgqvP..f.kevlihglvrdeqgrKmSKSlgNvidPldliekyGaDalRftlaalvaaGrD.inldlkkveaarkFlnKlwnasrfvlmnledk...keleegeeklsladrwilsklnelikevrealdkyrfaeaakalyeFiWndfcdwyiElvKkelyeeeeeekkeakstlaivLdkllrllhpfiPflteeiyqklkekadsimlasyPeveeelvdekaekefelvkeii 734
                 k++++ +yp++l+v+g D++    +  + +  a+  + P  + +  +++g v   + +KmSKS+gN i     ie++GaDa+R+t a     G D  n++ +     r  l  l   + +    l+++   ++l+ +   +  +d w  +++ +l + + e     rf ea k+      +d  d      K+++  ++ ++  ++++ ++   +    +++p++P+  eei++ +  k   ++ a +P+ ++e  d+k+ ++++ +  ++
  MMETSP1137-20121227|3962_1  77 KREIEFWYPMDLRVSGKDLVPNHLTMSLYNHAAVWADRPemWpRGFFCNGHVQ-VDAEKMSKSKGNFITLSGAIEEWGADATRLTCADAGD-GTDnANYNXSG--RXRTIL-ALTTEMEWLSSTLSGSgkdTKLRAKGAPKVWLDAWFENEMIRLLHLTAEGYRTIRFREALKTAFYG-MQDARD------KYRT--GT-AQIGALQELVQQWGEWQALMMAPITPHWCEEIWEIVGGK-GCVVRARWPTPRQE--DPKISAAGQYLFGLT 329
                 5678889**************99999999999999988855336799999997.5789**************************9888777.66614555443..333333.33333333333333333236777778889999************************9998653221.244444......4444..33.445555555566667778899***************999.8999999***9986..888888877776555 PP

>> TIGR00435  cysS: cysteine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.1   0.0   1.2e-11     7e-09     218     295 ..      84     164 ..      73     264 .. 0.83

  Alignments for each domain:
  == domain 1    score: 33.1 bits;  conditional E-value: 1.2e-11
   TIGR00435 218 eeldiHsGGvDlifpHHeNEiaqsealfd...kqlvkyflHngflkiegeKmSKSlgNfitikdllkkfdpralRllllsv 295
                 + +d+ + G+Dl+  H    +  + a++    + +   f+ ng+++++ eKmSKS gNfit+  +++++ + a Rl ++ +
  MMETSP1137-20121227|3962_1  84 YPMDLRVSGKDLVPNHLTMSLYNHAAVWAdrpEMWPRGFFCNGHVQVDAEKMSKSKGNFITLSGAIEEWGADATRLTCADA 164
                 56899999****99999988888888765444679999*************************************999864 PP

>> TIGR00392  ileS: isoleucine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.8   0.0   1.3e-10   7.6e-08     606     809 ..     129     314 ..     120     335 .. 0.72

  Alignments for each domain:
  == domain 1    score: 28.8 bits;  conditional E-value: 1.3e-10
   TIGR00392 606 dekGrKMSKslgNvvdpekvikkyGaDvlRlyvass.dpaedlkfseeilkevaekllkilnntlrFlllyanLdkfkpeeksl.kveklkelDrwilsklnslveeveealekyeflkvlraledfvseeLsnwY.lriskdrlyaekkdedkraaqttlyeiletlvkllapilpflaeeiyqnlkeekkeesvhlnefpevdee 809
                   + +KMSKs+gN +  +  i+++GaD+ Rl  a + d +++ +++ ++  ++       l   +++l   + L+++ +++k   k + +  lD w  +++  l+   + + e y   ++ +al+       +++Y ++ ++d+  + +  ++  a q+ +++  e  + ++api+p+ +eei++ + +   +  v  + +p++++e
  MMETSP1137-20121227|3962_1 129 QVDAEKMSKSKGNFITLSGAIEEWGADATRLTCADAgDGTDNANYNXSGRXRTIL----ALTTEMEWLS--STLSGSGKDTKLRaKGAPKVWLDAWFENEMIRLL---HLTAEGYRTIRFREALK-------TAFYgMQDARDKYRTGT--AQIGALQELVQQWGEWQALMMAPITPHWCEEIWEIVGG---KGCVVRARWPTPRQE 314
                 45679*******************************8999998888877544332....2333567788..9999888655544044555678***976665555...55556666666666666.......33442555777765544..44446888888888999999*************98877...356666777776554 PP

>> TIGR00396  leuS_bact: leucine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.1   0.0     4e-10   2.3e-07     598     772 ..     127     310 ..     123     322 .. 0.68

  Alignments for each domain:
  == domain 1    score: 27.1 bits;  conditional E-value: 4e-10
   TIGR00396 598 lvvvslekmskskkngidPqeivkkyGaDalRlyilFasPieksleWdesgleGaeRfldrvynlvkeilsekea.....ktelkeealeeaekelrrevhkalkkvte...dlekkeslntviselmkllnallkakk.....eelllealkalvtvlspiaPhlaeelaeklgeeeseikqakwpk 772
                 +v+v  ekmsksk+n i  +  ++++GaDa+Rl    a+  +++ +++ sg     R +  +   ++  +s+ ++     k   k   +   +  +++e+ + l+  +e   ++  +e+l t+   +    ++    +      +el+++  +    +++pi+Ph +ee++e +g +   + +a+wp+
  MMETSP1137-20121227|3962_1 127 HVQVDAEKMSKSKGNFITLSGAIEEWGADATRLTCADAGDGTDNANYNXSG---RXRTILALTTEMEWLSSTLSGsgkdtKLRAKGAPKVWLDAWFENEMIRLLHLTAEgyrTIRFREALKTAFYGMQDARDKYRTGTAqigalQELVQQWGEWQALMMAPITPHWCEEIWEIVGGKG-CVVRARWPT 310
                 578899**********************************99999999875...4444444444433333333332211122222333333344455555555555444000555566777877777777776665555677666788888888889*****************9555.666666875 PP

>> TIGR00398  metG: methionine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.6   0.0   7.1e-09   4.2e-06     310     352 ..     117     159 ..      71     175 .. 0.80

  Alignments for each domain:
  == domain 1    score: 23.6 bits;  conditional E-value: 7.1e-09
   TIGR00398 310 klpkqlvahgyltvegkkmSkSkgnvvdpedllarygadilRY 352
                   p+ ++  g+++v+ +kmSkSkgn++  + +++++gad++R 
  MMETSP1137-20121227|3962_1 117 MWPRGFFCNGHVQVDAEKMSKSKGNFITLSGAIEEWGADATRL 159
                 468999***********************************95 PP

>> TIGR03447  mycothiol_MshC: cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.0   2.6e-07   0.00015     241     301 ..      85     147 ..      79     170 .. 0.78

  Alignments for each domain:
  == domain 1    score: 18.5 bits;  conditional E-value: 2.6e-07
   TIGR03447 241 efdiqGGGsdlifPhhefsaahaeaatgeer..larhyvhagmigldGekmskskGnlvlvsk 301
                 ++d++  G dl+  h  +s  +  a+ ++++    r +   g + +d ekmskskGn++ +s 
  MMETSP1137-20121227|3962_1  85 PMDLRVSGKDLVPNHLTMSLYNHAAVWADRPemWPRGFFCNGHVQVDAEKMSKSKGNFITLSG 147
                 5688889*****99*9***876666666554225799********************987764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (457 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        70  (0.0170648); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.48u 0.15s 00:00:00.63 Elapsed: 00:00:00.59
# Mc/sec: 1022.36
//
Query:       MMETSP1137-20121227|3963_1  [L=469]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (469 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       261  (0.0636275); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.14s 00:00:00.49 Elapsed: 00:00:00.44
# Mc/sec: 1406.88
//
Query:       MMETSP1137-20121227|3965_1  [L=236]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (236 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       149  (0.0363237); expected 82.0 (0.02)
Passed bias filter:                      124  (0.0302292); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.16s 00:00:00.39 Elapsed: 00:00:00.32
# Mc/sec: 973.42
//
Query:       MMETSP1137-20121227|3966_1  [L=468]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (468 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        61  (0.0148708); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.19s 00:00:00.47 Elapsed: 00:00:00.98
# Mc/sec: 630.32
//
Query:       MMETSP1137-20121227|3967_1  [L=652]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.03   10.6   0.5      0.036   10.4   0.4    1.1  1  TIGR01059 gyrB: DNA gyrase, B subunit


Domain annotation for each model (and alignments):
>> TIGR01059  gyrB: DNA gyrase, B subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.4   8.7e-06     0.036     378     429 ..     267     320 ..     252     465 .. 0.88

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 8.7e-06
   TIGR01059 378 areaarkarelvrrksalesstlPGkladcsskdPseselyiveGdsa..GGsa 429
                 ++ a  +a    +rk  l+++ l  kladc+   P +   +  +G sa  GGs+
  MMETSP1137-20121227|3967_1 267 SAGAGGEAALHSQRKRELSEGDLIEKLADCTCDAPLKRPRFTSDGTSAstGGSS 320
                 3445566777889********************************987547765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (652 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       178  (0.0433935); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                        18  (0.0043881); expected 4.1 (0.001)
Passed Fwd filter:                         9  (0.00219405); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.62u 0.21s 00:00:00.83 Elapsed: 00:00:00.69
# Mc/sec: 1247.20
//
Query:       MMETSP1137-20121227|3968_1  [L=143]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (143 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       128  (0.0312043); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.15s 00:00:00.32 Elapsed: 00:00:00.32
# Mc/sec: 589.83
//
Query:       MMETSP1137-20121227|3969_1  [L=506]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.5e-61  206.3   1.9    1.5e-61  206.3   1.4    1.7  2  TIGR00115 tig: trigger factor


Domain annotation for each model (and alignments):
>> TIGR00115  tig: trigger factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  206.3   1.4   3.7e-65   1.5e-61       2     330 ..      64     400 ..      63     424 .. 0.92
   2 ?   -0.2   0.1     0.018        74     315     358 ..     422     467 ..     410     473 .. 0.71

  Alignments for each domain:
  == domain 1    score: 206.3 bits;  conditional E-value: 3.7e-65
   TIGR00115   2 kvkltvevpaeevkeevdkalkelakkvkipGFRkGKvPrsvvkkrygkevlq.ealnellqesfkeavkeekikplgqpe.ieeke.....lekgkdleftaefevyPevelk..dykgikvekpevevtdedvdeeleklreqnatlvpverd.aaekgDivtidfegkvdGeafeggkaedfelelgsgqfipgfeeqlvGmkaGeekeikvtFpedyhaeelagkeaefkvtvkevkekelpelddefakelgefetleelkakirkqleeekkeeskaklkealldkLvekn..efelPealveqeierlleelekqlqqqgidleeylkks.eeel 330
                 +v l ++vpa+   +  dk +++ +k++kipGFR+GKvP+s +   +g + ++   +++l++  +++   +  ++ +gq + + e+e     +  g+ + ft+ ++vyPev+++   ykg++ve+++v ++++  d++l klr q+a lv+v++d aae+g ++ i++eg+  +        e+++l l+ g+f+pg+ e+l+G+k Ge+++i vtF  +  ++elagkea+f v   +v++++lp  +d+fa++++      el ak+r+ ++ e+++ ++++  +++  +L++k+  +fe+Pe+l+eq  + +++ +  +++++g   e++++ + +e++
  MMETSP1137-20121227|3969_1  64 SVALDIKVPATISRQVHDKVMQDFSKTAKIPGFRQGKVPASALISAIGVKRIKvATVEQLIDVGMQQGSSQIRVNTVGQAKlVGEVEeiadkYVFGEAMDFTVVVDVYPEVPVEpdMYKGLSVEVEKVPFNQDAYDKALLKLRDQHADLVEVDADvAAEEGMQLLINMEGFAANADG----SEGVQLPLKPGKFMPGLVEGLIGVKRGETRDISVTFQRTS-VPELAGKEAVFAVSCLKVQRRVLPPTTDDFADKVKSGMLWTELDAKLREGVQAEADSLQRRATHREIERALIAKLpdDFEVPETLLEQVGKERFAAMLADMRERGAGDEQLKELIsKENY 400
                 6889*****************************************************************************98888899999999****************998668******************************************************977555....48899********************************999.***********************************877889**********************************999****************************99998887753332 PP

  == domain 2    score: -0.2 bits;  conditional E-value: 0.018
   TIGR00115 315 qgidleeylkks.eeelree.lkeeAekrvklglileeiakkekie 358
                 ++ d++ ++  +  e+++e+ ++++ e ++   ++l+ ++++ +++
  MMETSP1137-20121227|3969_1 422 KEGDVDAAQALQrGEKFKESeVRPKVEANIERAMVLDWLMEQSEVT 467
                 44444444444455666654499999****9999999999998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (506 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       148  (0.03608); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.15s 00:00:00.52 Elapsed: 00:00:00.46
# Mc/sec: 1451.88
//
Query:       MMETSP1137-20121227|3970_1  [L=210]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (210 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       116  (0.0282789); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.14s 00:00:00.32 Elapsed: 00:00:00.33
# Mc/sec: 839.93
//
Query:       MMETSP1137-20121227|3972_1  [L=143]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (143 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        91  (0.0221843); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.12s 00:00:00.28 Elapsed: 00:00:00.35
# Mc/sec: 539.27
//
Query:       MMETSP1137-20121227|3973_1  [L=338]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (338 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        54  (0.0131643); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.17s 00:00:00.42 Elapsed: 00:00:00.56
# Mc/sec: 782.67
//
Query:       MMETSP1137-20121227|3974_1  [L=415]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.7e-87  291.6   0.0    2.4e-87  291.1   0.0    1.0  1  TIGR00669 asnA: aspartate--ammonia ligase


Domain annotation for each model (and alignments):
>> TIGR00669  asnA: aspartate--ammonia ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  291.1   0.0   5.9e-91   2.4e-87       8     324 ..      76     404 ..      73     410 .. 0.92

  Alignments for each domain:
  == domain 1    score: 291.1 bits;  conditional E-value: 5.9e-91
   TIGR00669   8 kqqeisfvkstftqklierlglievqgpilsqvgdgiqdnls..giekavqvk..vkaipdaafevvhslakwkrhtlarydfkedeglfvhmkalrpdedsldpvrsvyvdqwdwekvvpegernlaylketveaiyaairatevavserf.....glaallpkqivfvhseelvkrypdldskgredaiakelgavfligiggklsdgkphdvrapdyddwttes....elgykglngdilvwnpvlgkafelssmgirvdedalrlqlaltgdedrlelewhqdllngklpqtigggigqsrlamlllqkkhigevqasvwpkevre 324
                  q+ i ++k+ + + l  +l l  v++p++     g++d l   g    v+    +   p    +vv + +kwkr +l +++ + +egl++ m+a+r d  +ld+ +s yvdqwdwekvv+  +rnl ylke v++i++ i+ ++ ++ ++f     +  + +p++++fvh+ee++  y dl  k+re a++ke+ avf++gig +l dg ph++ra dyddw t++     +++ glngdilvwnpv ++  elssmg+rv +++l +ql ++ +   l++ +h+ ++n ++p++igggigqsrl   ll+k  +ge   +vwp+e+++
  MMETSP1137-20121227|3974_1  76 TQRAIMMAKQYIEEGLCRELNLFRVECPMILTKDSGMNDYLDrdGSRTPVDFPagLGISPRLEVQVVQAATKWKRWALKQFGCDVGEGLYTDMRAIRKD-YFLDHDHSSYVDQWDWEKVVTPDQRNLEYLKEVVKRIWKVIKGCDTLLRKEFpalntDKYPPIPDELKFVHAEEILAMYLDLPRKQRETALVKEFSAVFIVGIGAVLKDGYPHEMRAADYDDWITPTvtndGEQFYGLNGDILVWNPVTQRRHELSSMGLRVTKETLVKQLEISQQTHFLQMPYHKMIMNDQIPLSIGGGIGQSRLYGYLLRKAALGECSVGVWPEELHK 404
                 5999***********************************996226666666531156679999**********************************98.59*************************************************953333334679************************************************************9986222135689*****************************************************************************************99875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (415 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       121  (0.0294978); expected 82.0 (0.02)
Passed bias filter:                      114  (0.0277913); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.31u 0.16s 00:00:00.47 Elapsed: 00:00:00.51
# Mc/sec: 1074.03
//
Query:       MMETSP1137-20121227|3976_1  [L=65]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (65 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        16  (0.00390054); expected 82.0 (0.02)
Passed bias filter:                       15  (0.00365675); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.14s 00:00:00.27 Elapsed: 00:00:00.37
# Mc/sec: 231.87
//
Query:       MMETSP1137-20121227|3977_1  [L=193]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (193 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       204  (0.0497318); expected 82.0 (0.02)
Passed bias filter:                       99  (0.0241346); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.17s 00:00:00.37 Elapsed: 00:00:00.43
# Mc/sec: 592.42
//
Query:       MMETSP1137-20121227|3978_1  [L=188]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (188 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       173  (0.0421745); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.15s 00:00:00.35 Elapsed: 00:00:00.38
# Mc/sec: 653.00
//
Query:       MMETSP1137-20121227|3979_1  [L=172]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (172 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       126  (0.0307167); expected 82.0 (0.02)
Passed bias filter:                      104  (0.0253535); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.13s 00:00:00.32 Elapsed: 00:00:00.66
# Mc/sec: 343.97
//
Query:       MMETSP1137-20121227|3980_1  [L=354]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (354 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       122  (0.0297416); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.13s 00:00:00.39 Elapsed: 00:00:00.39
# Mc/sec: 1198.05
//
Query:       MMETSP1137-20121227|3981_1  [L=431]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   1.4e-124  412.9   1.0   1.8e-124  412.6   0.7    1.1  1  TIGR03182 PDH_E1_alph_y: pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit
    2.2e-69  231.7   0.3    3.2e-69  231.2   0.2    1.1  1  TIGR03181 PDH_E1_alph_x: pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit
      3e-07   26.5   0.0    4.4e-07   26.0   0.0    1.1  1  TIGR00239 2oxo_dh_E1: oxoglutarate dehydrogenase (succinyl-transferring), E1 component
     0.0004   16.8   0.1      0.001   15.5   0.0    1.7  2  TIGR00204 dxs: 1-deoxy-D-xylulose-5-phosphate synthase
     0.0098   12.9   0.1      0.014   12.4   0.1    1.1  1  TIGR01349 PDHac_trf_mito: pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase


Domain annotation for each model (and alignments):
>> TIGR03182  PDH_E1_alph_y: pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  412.6   0.7  2.2e-127  1.8e-124       1     314 [.     106     418 ..     106     419 .. 0.99

  Alignments for each domain:
  == domain 1    score: 412.6 bits;  conditional E-value: 2.2e-127
   TIGR03182   1 keellelyremlliRrfEekaaqlYkkgkigGfvHlyiGqEAvavgleaalkeddsvitsYRdHghalaagveakevmaEllgketGvskGkGGsmHlfdkekkflGGhgivgaqvplatGlafaekykkedevtlaffGdgavnqGqvyEslnlaalwklPvifviennkyamGtaverssaekdlakkgesfgikglevdGmdvlavreaakeavervragkgPvllelktyRfrgHslsDpa.kyRskeeveevk.krdpieklkkaliekgllseeelkeiekevkaeveeavefaeespepdveeLlkdvy 314
                 k+el+e+y++m ++Rr+E  a+ lYk ++i+Gf+Hly GqEAv +g+eaa + +ds++tsYRdH++ +++g ++ +++ Ellgk  G +kGkGGsmH++ +e++f+GG+givgaq p+++Glafa+kyk++  v++a++Gdga+nqGq+yE  n+aalwklPvifv+enn+y+mGta++r s ++ ++ +g+   i+g++vdGm+vlavrea k a+e++r+ +gPvl+e++tyR++gHs+sDp  +yR+++ev+ v+ +rdp+  +k +l +kgl s +elk+ie+ ++a++++av+ a+++p p+++eL++d+y
  MMETSP1137-20121227|3981_1 106 KKELVEYYKTMFTMRRMEIAADVLYKGKLIKGFCHLYDGQEAVGMGIEAASSYKDSIVTSYRDHTYQFTRGDSVANILGELLGKYIGPAKGKGGSMHMYRSENNFYGGNGIVGAQTPIGAGLAFAHKYKGDGGVAFALYGDGAANQGQLYEVTNMAALWKLPVIFVCENNQYGMGTATHRGSFDTAYYARGQ--YIPGIQVDGMNVLAVREACKYAMEYARQ-EGPVLIEMDTYRYHGHSMSDPGvTYRTRDEVSGVRsARDPVALVKGWLADKGLCSADELKAIEQGIRATIDKAVDTAKNAPPPPAAELYNDIY 418
                 57899******************************************************************************************************************************************************************************************6..5*************************97.69*******************999***********9********************************************************9 PP

>> TIGR03181  PDH_E1_alph_x: pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  231.2   0.2   3.9e-72   3.2e-69      18     328 ..     101     419 ..      88     426 .. 0.91

  Alignments for each domain:
  == domain 1    score: 231.2 bits;  conditional E-value: 3.9e-72
   TIGR03181  18 aaklseeelvelyremvltRrldekalalqRqGrl..gtyapllGqEAaqvgsalalrkeDvlvpsYRdaaallarGvkleeillywrgdekgsklp.........eevnilpinvpigtqvlhAaGvAlalklkgekevavayiGdGgtsegdfyealnfAavfkapvvfvvqNNqwAISvprskqtaaktlaqkavaagipgvqvDGnDvlAvyevvkealekArkgegPtLiEavtYRlgaHttaDdptrYrskeeee.ewkkkdPiarlrkyLeekglldeekeeeleeeaeeevkeaveeveelpkpkvedlfdnvYa 328
                 +a++s++elve y++m ++Rr++  a  l  +G+l  g+     GqEA+ +g+++a + +D +v+sYRd++ +++rG ++++il  + g+  g +           +e n+   n ++g+q++  aG+A+a k+kg+  va+a+ GdG++ +g +ye  n+Aa++k+pv+fv++NNq+ + +++++ +  +  a  a +  ipg+qvDG+ vlAv e+ k a+e+Ar+ egP+LiE+ tYR+  H+++D    Yr+++e++   +++dP+a ++ +L++kgl + ++ +++e+ +++++++av++++++p+p++++l++++Y+
  MMETSP1137-20121227|3981_1 101 KATTSKKELVEYYKTMFTMRRMEIAADVLY-KGKLikGFCHLYDGQEAVGMGIEAASSYKDSIVTSYRDHTYQFTRGDSVANILGELLGKYIGPAKGkggsmhmyrSENNFYGGNGIVGAQTPIGAGLAFAHKYKGDGGVAFALYGDGAANQGQLYEVTNMAALWKLPVIFVCENNQYGMGTATHRGSFDT--AYYARGQYIPGIQVDGMNVLAVREACKYAMEYARQ-EGPVLIEMDTYRYHGHSMSDPGVTYRTRDEVSgVRSARDPVALVKGWLADKGLCSADELKAIEQGIRATIDKAVDTAKNAPPPPAAELYNDIYH 419
                 567899****************99888776.5887666667789***********************************998887666554332222122233555789999************************************************************************9999887..7888899***************************8.67******************************88888*******************************************************97 PP

>> TIGR00239  2oxo_dh_E1: oxoglutarate dehydrogenase (succinyl-transferring), E1 component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.0   0.0   5.3e-10   4.4e-07     348     515 ..     240     401 ..     229     415 .. 0.84

  Alignments for each domain:
  == domain 1    score: 26.0 bits;  conditional E-value: 5.3e-10
   TIGR00239 348 ailihGdaavaGqGvvqetlnlsklkgysvGGtiriiinnqiGftt.epaearstkyasdlakaieaPivhvnaddpeavafvvklaveyrkkfkkdvlidlvgyrrhGhneadePsatqPll..ykkikkhptsrkvyadklvkegvvteedvdevanlyrdalekakqv 515
                 a  ++Gd a a qG ++e  n++ l +  v   i +  nnq G+ t   + +  t y    a++  +P + v++ ++ av  ++k a+ey ++ +  vli++ +yr hGh   d P +t       + ++  + +  +    l + g  + ++++ +++ +r +++ka ++
  MMETSP1137-20121227|3981_1 240 AFALYGDGA-ANQGQLYEVTNMAALWKLPV---IFVCENNQYGMGTaTHRGSFDTAY---YARGQYIPGIQVDGMNVLAVREACKYAMEYARQ-EGPVLIEMDTYRYHGHSMSD-PGVTYRTRdeVSGVRSARDPVALVKGWLADKGLCSADELKAIEQGIRATIDKAVDT 401
                 677899998.679***********999876...9**********9966677778888...589***************************876.789*************8665.76666554114557777777778888899999999999999999999999888765 PP

>> TIGR00204  dxs: 1-deoxy-D-xylulose-5-phosphate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   1.3e-06     0.001      98     174 ..     203     278 ..     189     295 .. 0.81
   2 ?   -2.7   0.0       0.4   3.3e+02     245     281 ..     304     343 ..     296     347 .. 0.76

  Alignments for each domain:
  == domain 1    score: 15.5 bits;  conditional E-value: 1.3e-06
   TIGR00204  98 pkrseseydvlsaGhsstsisaglGiavaaelkgadekvvaviGdGaltaGmalealnhaGdlkkdllvilndnems 174
                 + rse ++ +   G   +   +g G+a a++ kg+     a+ GdGa   G  +e  n a   k +++ + ++n+  
  MMETSP1137-20121227|3981_1 203 MYRSENNF-YGGNGIVGAQTPIGAGLAFAHKYKGDGGVAFALYGDGAANQGQLYEVTNMAALWKLPVIFVCENNQYG 278
                 55566555.3455666667778999*******************************************999888744 PP

  == domain 2    score: -2.7 bits;  conditional E-value: 0.4
   TIGR00204 245 vdGhdlselietlknakk...lkgPvllhvktkkGkGykl 281
                 vdG ++ ++ e+ k+a +    +gPvl+ + t + +G+++
  MMETSP1137-20121227|3981_1 304 VDGMNVLAVREACKYAMEyarQEGPVLIEMDTYRYHGHSM 343
                 7899999998888887652224799999999998888765 PP

>> TIGR01349  PDHac_trf_mito: pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.4   0.1   1.7e-05     0.014     140     193 ..      27      78 ..       8     116 .. 0.75

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 1.7e-05
   TIGR01349 140 rifasPlAkklAkekgidLsavk.GsGPngRivkkDiesfvpkkkesaqeaaaak 193
                  + asP  ++l ++ g+d  +++  sGP + ++k+D++ + + kk++ +   +a+
  MMETSP1137-20121227|3981_1  27 TLKASPSVRRLIQQYGLDEGSISaHSGPMNTVTKADVNAAYEAKKAQDK---EAE 78 
                 5679**************99996269*************9996543333...222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (431 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        92  (0.0224281); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.36u 0.13s 00:00:00.49 Elapsed: 00:00:00.56
# Mc/sec: 1015.84
//
Query:       MMETSP1137-20121227|3982_1  [L=470]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (470 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        82  (0.0199902); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.10s 00:00:00.43 Elapsed: 00:00:00.55
# Mc/sec: 1127.91
//
Query:       MMETSP1137-20121227|3983_1  [L=396]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.6e-06   21.5   0.1    1.7e-05   20.7   0.0    1.3  1  TIGR02917 PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein
      1e-05   23.1   0.4    1.6e-05   22.4   0.3    1.2  1  TIGR02521 type_IV_pilW: type IV pilus biogenesis/stability protein PilW
    2.1e-05   22.1   0.9    3.7e-05   21.3   0.6    1.4  1  TIGR02552 LcrH_SycD: type III secretion low calcium response chaperone LcrH/SycD
    2.5e-05   20.9   0.7    9.4e-05   19.0   0.1    1.8  2  TIGR00990 3a0801s09: mitochondrial precursor proteins import receptor
  ------ inclusion threshold ------
      0.036   12.5   0.1       0.59    8.6   0.1    2.2  2  TIGR02795 tol_pal_ybgF: tol-pal system protein YbgF


Domain annotation for each model (and alignments):
>> TIGR02917  PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.7   0.0   2.1e-08   1.7e-05     365     459 ..      24     121 ..      13     143 .. 0.82

  Alignments for each domain:
  == domain 1    score: 20.7 bits;  conditional E-value: 2.1e-08
   TIGR02917 365 llsllGeayLekgdfekAaeylakaseldPen...aaaktklgiskLaqGdkseaiadLetAvkldpellraellLilsyLrsgefdkalaaakklek 459
                  ls +G  + e gd+ +A++++a+a+ l+P n   aa+  ++++  +   + + a +   +Av+l p  ++a+l L+ + L  g+f+ a+   +  +k
  MMETSP1137-20121227|3983_1  24 RLSCSGNRAAEDGDMHEAEALFARAAILEPRNekrAALLESQAQCLMQLEEYTRACEICFEAVALSPSWGDARLTLARACLNDGRFEDAIVHFEFAAK 121
                 57889999999999999999999999999977333666678999999999999999999999999999999999999999999999999876655555 PP

>> TIGR02521  type_IV_pilW: type IV pilus biogenesis/stability protein PilW
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.4   0.3   1.9e-08   1.6e-05     112     215 ..      35     139 ..      33     146 .. 0.94

  Alignments for each domain:
  == domain 1    score: 22.4 bits;  conditional E-value: 1.9e-08
   TIGR02521 112 qkkyeeAeqqfe.aAiedpkYeqparsyeNaglcalkagdtekaekyltralkidpkrpesllelaelklkkgqyaeAralleryqqtveqtaesLwLgiriaka 215
                  ++++eAe+ f  aAi +p  e++a+ +e+ + c++++++  +a +   +a+++ p+  ++ l+la+  l++g+  +A   +e  +++   + e+  Lg+++a+a
  MMETSP1137-20121227|3983_1  35 DGDMHEAEALFArAAILEPRNEKRAALLESQAQCLMQLEEYTRACEICFEAVALSPSWGDARLTLARACLNDGRFEDAIVHFEFAAKLQVTDSEMQSLGADLARA 139
                 57899******7257899*****************************************************************999999*************998 PP

>> TIGR02552  LcrH_SycD: type III secretion low calcium response chaperone LcrH/SycD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3   0.6   4.5e-08   3.7e-05      26     125 ..      30     132 ..       9     143 .. 0.88

  Alignments for each domain:
  == domain 1    score: 21.3 bits;  conditional E-value: 4.5e-08
   TIGR02552  26 YnlyqqgkyeeAeklFqlLaaldpteakywlgL...aaclqalkeyeeAiaaYalaaaldlddprpvyhaaecllalgekeeAlkaLklaieiaeekeeysel 125
                  ++ + g+  eAe lF+  a+l+p ++k ++ L   a cl++l+ey++A ++   a+al+++  ++ + +a   l+ g+ e+A   ++ a++++  ++e + l
  MMETSP1137-20121227|3983_1  30 NRAAEDGDMHEAEALFARAAILEPRNEKRAALLesqAQCLMQLEEYTRACEICFEAVALSPSWGDARLTLARACLNDGRFEDAIVHFEFAAKLQVTDSEMQSL 132
                 567789******************9988766555559*********************************************************999988877 PP

>> TIGR00990  3a0801s09: mitochondrial precursor proteins import receptor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.1     0.012       9.5     523     558 ..      37      75 ..      30      78 .. 0.79
   2 !   19.0   0.1   1.2e-07   9.4e-05     514     578 ..      66     129 ..      58     143 .. 0.88

  Alignments for each domain:
  == domain 1    score: 2.5 bits;  conditional E-value: 0.012
   TIGR00990 523 dfieaekllekalildPesdiavitl...aqlllqqekv 558
                 d  eae l  +a il+P+ ++  + l   aq l+q e+ 
  MMETSP1137-20121227|3983_1  37 DMHEAEALFARAAILEPRNEKRAALLesqAQCLMQLEEY 75 
                 789****************98766544448888887765 PP

  == domain 2    score: 19.0 bits;  conditional E-value: 1.2e-07
   TIGR00990 514 alalfrtkedfieaekllekalildPesdiavitlaqlllqqekvdealklferaaelarteeel 578
                 a  l++  e+++ a +++  a+ l P    a+ tla+  l  ++ ++a+ +fe aa+l  t  e+
  MMETSP1137-20121227|3983_1  66 AQCLMQ-LEEYTRACEICFEAVALSPSWGDARLTLARACLNDGRFEDAIVHFEFAAKLQVTDSEM 129
                 445555.589*************************************************999885 PP

>> TIGR02795  tol_pal_ybgF: tol-pal system protein YbgF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   0.1   0.00073      0.59      46     100 ..      29      83 ..      27      98 .. 0.88
   2 ?    1.9   0.0     0.088        73      39      63 ..      93     117 ..      87     130 .. 0.73

  Alignments for each domain:
  == domain 1    score: 8.6 bits;  conditional E-value: 0.00073
   TIGR02795  46 GealyakkkykdAakaflevvkkypksekapdallklgeslqelgqkekAkktlq 100
                 G+   + +++++A++ f+ +    p +ek++  l  ++++l +l++ + A+++  
  MMETSP1137-20121227|3983_1  29 GNRAAEDGDMHEAEALFARAAILEPRNEKRAALLESQAQCLMQLEEYTRACEICF 83 
                 667778999******************************************9854 PP

  == domain 2    score: 1.9 bits;  conditional E-value: 0.088
   TIGR02795  39 pnAqYwlGealyakkkykdAakafl 63 
                 ++A+  l+ a ++ + ++dA+ +f+
  MMETSP1137-20121227|3983_1  93 GDARLTLARACLNDGRFEDAIVHFE 117
                 6777777777777777777777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (396 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       112  (0.0273038); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.34u 0.14s 00:00:00.48 Elapsed: 00:00:00.49
# Mc/sec: 1066.69
//
Query:       MMETSP1137-20121227|3984_1  [L=285]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (285 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       106  (0.0258411); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.16s 00:00:00.40 Elapsed: 00:00:00.45
# Mc/sec: 835.93
//
Query:       MMETSP1137-20121227|3985_1  [L=443]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (443 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       128  (0.0312043); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.15s 00:00:00.46 Elapsed: 00:00:00.56
# Mc/sec: 1025.81
//
Query:       MMETSP1137-20121227|3986_1  [L=126]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (126 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        72  (0.0175524); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.16s 00:00:00.32 Elapsed: 00:00:01.36
# Mc/sec: 122.28
//
Query:       MMETSP1137-20121227|3987_1  [L=152]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (152 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        48  (0.0117016); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.12s 00:00:00.28 Elapsed: 00:00:00.70
# Mc/sec: 286.60
//
Query:       MMETSP1137-20121227|3988_1  [L=221]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.9e-09   33.6   0.0    4.6e-09   32.9   0.0    1.2  1  TIGR03817 DECH_helic: helicase/secretion neighborhood putative DEAH-box helicase
    6.5e-09   31.9   0.0    7.2e-09   31.7   0.0    1.1  1  TIGR04121 DEXH_lig_assoc: DEXH box helicase, DNA ligase-associated
     0.0062   13.4   0.0       0.01   12.7   0.0    1.3  1  TIGR04095 dnd_restrict_1: DNA phosphorothioation system restriction enzyme
     0.0062   12.6   0.4      0.015   11.4   0.0    1.6  2  TIGR01407 dinG_rel: putative DnaQ family exonuclease/DinG family helicase


Domain annotation for each model (and alignments):
>> TIGR03817  DECH_helic: helicase/secretion neighborhood putative DEAH-box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.9   0.0   4.5e-12   4.6e-09      23     106 ..      99     191 ..      93     218 .. 0.84

  Alignments for each domain:
  == domain 1    score: 32.9 bits;  conditional E-value: 4.5e-12
   TIGR03817  23 pdvvaaleaaGieapwqhqaraaelahaGehvvvatgtasGkslayllPvlsalaed.........pratalylaPtkalaadqlravkelee 106
                 p+v + l++aG ++p + q +a  +  +G++ +  + t sGk+la+llP++ +l+++         p  +al ++Pt+ la+   + ++++  
  MMETSP1137-20121227|3988_1  99 PSVLQMLSNAGYSTPTAIQSQAWPILLEGQDLIAIAKTGSGKTLAFLLPMMHRLSQKpapltldklPAPRALVISPTRELASQIFAECQKFGA 191
                 789999***************************************************6666666555999***********999998887765 PP

>> TIGR04121  DEXH_lig_assoc: DEXH box helicase, DNA ligase-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.7   0.0     7e-12   7.2e-09       7      91 ..     105     195 ..      99     221 .] 0.79

  Alignments for each domain:
  == domain 1    score: 31.7 bits;  conditional E-value: 7e-12
   TIGR04121   7 faargw.eprafQkevleaaeegesglliapTGaGKTlavflpslielaakekpk.....kglkvlyitPLkaLakdieraleapieelgl 91 
                 +++ g+ +p+a Q +++  + eg++ + ia TG+GKTla  lp++ +l +k +p       + ++l i+P + La++i    ++  + l+l
  MMETSP1137-20121227|3988_1 105 LSNAGYsTPTAIQSQAWPILLEGQDLIAIAKTGSGKTLAFLLPMMHRLSQKPAPLtldklPAPRALVISPTRELASQIFAECQKFGACLKL 195
                 556666358999*************************************665554565557789**************9988887666555 PP

>> TIGR04095  dnd_restrict_1: DNA phosphorothioation system restriction enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.7   0.0   9.8e-06      0.01      26      79 ..     128     191 ..     114     200 .. 0.74

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 9.8e-06
   TIGR04095  26 rGilkma.tGtGktltaLa.lvsklaekikslvv........vvvvPykhLveqWakeaekFgl 79 
                 + ++++a tG+Gktl  L  ++++l++k  +l++        +v+ P ++L++q  +e++kFg 
  MMETSP1137-20121227|3988_1 128 QDLIAIAkTGSGKTLAFLLpMMHRLSQKPAPLTLdklpapraLVISPTRELASQIFAECQKFGA 191
                 555666559******9876255666555555543333334449*******************96 PP

>> TIGR01407  dinG_rel: putative DnaQ family exonuclease/DinG family helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.1      0.11   1.2e+02     675     695 ..      43      63 ..      16      77 .. 0.61
   2 !   11.4   0.0   1.4e-05     0.015     264     287 ..     127     150 ..     121     162 .. 0.80

  Alignments for each domain:
  == domain 1    score: -1.5 bits;  conditional E-value: 0.11
   TIGR01407 675 aenarvlvptdvpaiknvsle 695
                 ++ +rv v++d+  +++vs+ 
  MMETSP1137-20121227|3988_1  43 QKAERVAVVSDARRMQDVSSA 63 
                 233456666666666666554 PP

  == domain 2    score: 11.4 bits;  conditional E-value: 1.4e-05
   TIGR01407 264 eekslIeAatGtGKtlgYLLpaly 287
                  ++++  A tG+GKtl++LLp++ 
  MMETSP1137-20121227|3988_1 127 GQDLIAIAKTGSGKTLAFLLPMMH 150
                 56667779*************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (221 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       290  (0.0706972); expected 82.0 (0.02)
Passed bias filter:                      187  (0.0455875); expected 82.0 (0.02)
Passed Vit filter:                        29  (0.00706972); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.28u 0.19s 00:00:00.47 Elapsed: 00:00:00.49
# Mc/sec: 595.30
//
Query:       MMETSP1137-20121227|3989_1  [L=111]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (111 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        41  (0.00999512); expected 82.0 (0.02)
Passed bias filter:                       40  (0.00975134); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.16s 00:00:00.31 Elapsed: 00:00:00.28
# Mc/sec: 523.24
//
Query:       MMETSP1137-20121227|3990_1  [L=82]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (82 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        50  (0.0121892); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.15s 00:00:00.28 Elapsed: 00:00:00.87
# Mc/sec: 124.40
//
Query:       MMETSP1137-20121227|3991_1  [L=150]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (150 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       151  (0.0368113); expected 82.0 (0.02)
Passed bias filter:                      122  (0.0297416); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.15s 00:00:00.32 Elapsed: 00:00:00.35
# Mc/sec: 565.67
//
Query:       MMETSP1137-20121227|3992_1  [L=95]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.7e-06   24.8   1.7    2.9e-06   24.7   1.2    1.0  1  TIGR00837 araaP: aromatic amino acid transport protein


Domain annotation for each model (and alignments):
>> TIGR00837  araaP: aromatic amino acid transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.7   1.2     7e-10   2.9e-06       9      93 ..       3      88 ..       1      94 [. 0.91

  Alignments for each domain:
  == domain 1    score: 24.7 bits;  conditional E-value: 7e-10
   TIGR00837  9 tviGaGmlalPvstagawfivsllllillwllmllsgllllEv.lltyeagaslatlakdllGkkgniiaglsllfvlyiLlyAYi 93
                 v+GaG+l+lP + a+ + + +++ ++l ++ + ++g ll  v +  y+  +s+a+la +++G     ++ l + +    Ll  Y+
  MMETSP1137-20121227|3992_1  3 EVMGAGVLGLPRAFAQLGWVLGVFSVVLFAATAAYAGCLLARVrNCIYPHASSYADLALETVGPRFSALTKLCMHVTWGLLLPFYL 88
                589**************************************994457889************************999999988875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (95 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        99  (0.0241346); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.15u 0.16s 00:00:00.31 Elapsed: 00:00:00.31
# Mc/sec: 404.48
//
Query:       MMETSP1137-20121227|3993_1  [L=92]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (92 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       192  (0.0468064); expected 82.0 (0.02)
Passed bias filter:                      149  (0.0363237); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.16s 00:00:00.32 Elapsed: 00:00:00.39
# Mc/sec: 311.36
//
Query:       MMETSP1137-20121227|3994_1  [L=1106]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1106 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       116  (0.0282789); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.61u 0.13s 00:00:00.74 Elapsed: 00:00:00.80
# Mc/sec: 1824.75
//
Query:       MMETSP1137-20121227|3995_1  [L=207]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (207 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       191  (0.0465627); expected 82.0 (0.02)
Passed bias filter:                      121  (0.0294978); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.13s 00:00:00.34 Elapsed: 00:00:00.33
# Mc/sec: 827.93
//
Query:       MMETSP1137-20121227|3996_1  [L=161]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (161 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        38  (0.00926377); expected 82.0 (0.02)
Passed bias filter:                       37  (0.00901999); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.13s 00:00:00.30 Elapsed: 00:00:00.34
# Mc/sec: 625.01
//
Query:       MMETSP1137-20121227|3997_1  [L=188]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (188 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        93  (0.0226719); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.16s 00:00:00.33 Elapsed: 00:00:00.34
# Mc/sec: 729.82
//
Query:       MMETSP1137-20121227|3998_1  [L=261]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (261 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       134  (0.032667); expected 82.0 (0.02)
Passed bias filter:                      126  (0.0307167); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.18s 00:00:00.41 Elapsed: 00:00:00.57
# Mc/sec: 593.95
//
Query:       MMETSP1137-20121227|3999_1  [L=155]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (155 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.14s 00:00:00.31 Elapsed: 00:00:00.33
# Mc/sec: 619.95
//
Query:       MMETSP1137-20121227|4000_1  [L=234]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0071   13.6   5.4     0.0056   14.0   2.9    1.5  1  TIGR03759 conj_TIGR03759: integrating conjugative element protein, PFL_4693 family
  ------ inclusion threshold ------
      0.013   12.1   2.8      0.019   11.5   2.0    1.2  1  TIGR00190 thiC: thiamine biosynthesis protein ThiC


Domain annotation for each model (and alignments):
>> TIGR03759  conj_TIGR03759: integrating conjugative element protein, PFL_4693 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   2.9   2.7e-06    0.0056      50     109 ..     110     169 ..      98     188 .. 0.85

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 2.7e-06
   TIGR03759  50 eeeRrryAelqvkeeaqrvekeLafqraydkafkrlypnelvvelseasgaaekialqes 109
                 ++e++r  e ++   +++ ekeL+fq a+dka+k+ +  + +v +  +  ++++ a +  
  MMETSP1137-20121227|4000_1 110 AREKQRMKETAMSLAREEREKELQFQAAIDKAAKEAVVAAASVGHAVQPRMRQRRARNLP 169
                 57999*********************************9999998666666666665555 PP

>> TIGR00190  thiC: thiamine biosynthesis protein ThiC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   2.0   9.3e-06     0.019     351     392 ..     105     144 ..      85     154 .. 0.80

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 9.3e-06
   TIGR00190 351 haadlakgkkgarerdlelskarkefdWekqfelaldpekar 392
                  a dla++k+  r +++++s ar+e + e qf++a+d++  +
  MMETSP1137-20121227|4000_1 105 AAMDLAREKQ--RMKETAMSLAREEREKELQFQAAIDKAAKE 144
                 3567777665..599**********************97654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (234 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       368  (0.0897123); expected 82.0 (0.02)
Passed bias filter:                      144  (0.0351048); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.26u 0.16s 00:00:00.42 Elapsed: 00:00:00.32
# Mc/sec: 965.17
//
Query:       MMETSP1137-20121227|4001_1  [L=251]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (251 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        92  (0.0224281); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.19s 00:00:00.40 Elapsed: 00:00:00.53
# Mc/sec: 625.08
//
Query:       MMETSP1137-20121227|4002_1  [L=266]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (266 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        90  (0.0219405); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.11s 00:00:00.34 Elapsed: 00:00:00.44
# Mc/sec: 797.93
//
Query:       MMETSP1137-20121227|4003_1  [L=917]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   3.7e-199  660.4   0.0   4.5e-199  660.1   0.0    1.1  1  TIGR01241 FtsH_fam: ATP-dependent metallopeptidase HflB
    7.7e-74  246.8   0.7    1.1e-73  246.3   0.5    1.1  1  TIGR01242 26Sp45: 26S proteasome subunit P45 family
    8.4e-69  230.4   0.3    1.1e-68  230.0   0.2    1.1  1  TIGR01243 CDC48: AAA family ATPase, CDC48 subfamily
    2.9e-40  136.3   0.2    5.1e-40  135.5   0.1    1.3  1  TIGR03689 pup_AAA: proteasome ATPase
    2.6e-06   24.0   0.1    4.1e-06   23.3   0.0    1.2  1  TIGR00763 lon: ATP-dependent protease La
    0.00024   18.0   0.0     0.0013   15.5   0.0    2.0  2  TIGR00390 hslU: ATP-dependent protease HslVU, ATPase subunit
     0.0015   15.4   0.0     0.0026   14.7   0.0    1.3  1  TIGR00635 ruvB: Holliday junction DNA helicase RuvB
     0.0027   14.6   0.0     0.0048   13.8   0.0    1.3  1  TIGR00382 clpX: ATP-dependent Clp protease, ATP-binding subunit ClpX
     0.0029   14.0   0.0     0.0045   13.4   0.0    1.2  1  TIGR03922 T7SS_EccA: type VII secretion AAA-ATPase EccA
  ------ inclusion threshold ------
      0.014   12.7   0.0      0.024   12.0   0.0    1.3  1  TIGR02640 gas_vesic_GvpN: gas vesicle protein GvpN
      0.051   10.0   0.0      0.081    9.3   0.0    1.2  1  TIGR00368 TIGR00368: Mg chelatase-like protein


Domain annotation for each model (and alignments):
>> TIGR01241  FtsH_fam: ATP-dependent metallopeptidase HflB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  660.1   0.0  1.2e-201  4.5e-199       5     495 ..     281     764 ..     277     765 .. 0.95

  Alignments for each domain:
  == domain 1    score: 660.1 bits;  conditional E-value: 1.2e-201
   TIGR01241   5 vllsllplilllvglfllflrqakgaggs..rifslgkskaklleeekvkvtfkdvaGideakeelveivdfLknpkkftklGakiPkGvllvGpPGtGktLlakavaGeagvpffsisGsdfvemfvGvGasrvrDlfeqakknaPciifiDeiDavGrkrgag.lgggndereqtLnqlLvemDGfetnegvivlaatnrpdvLDkaLlrPGrfDrqvvvdkPdlkgreeilkvhakkvklaeevdlk..kvarrtpGfsGadlanlvneaallaarknkkevtlkeleeavdrviaGlekksrvisekekklvayheaGhalvgllvkeadkvkkvtiiprGq.alGvtlslPeedklllskkellakiavllgGrvaeeiifgevttGasnDlkkatkiaramvtelGmseklgavayeeeeeevllgkelkkekeyseetakeiDeevkriieeaykkakeilkekkeelellakeLleketiekeelkell 495
                  +  ++p++ll+ ++++l + +++g+gg+   if++gkska ++++  v ++fkdvaG++eak e++e+vd L+np+++tklGakiPkG+llvGpPG GktLlaka+aGea+ pf+s+sGsdf+emfvGvG srvrDlf qa+ naPc++fiDeiDavGr+rg+g + ggndere+tL qlL+e+DGf+ ++g++vla+tnrpd+LD+aLlrPGrfDrqvvvdkPd+kgr ei++vh+ ++kl+++++    k+a  tpGfsGa++an++neaal+aar++ k v ++ ++ a+drviaGlekk  +i+++e++++a+heaGhalvg+++++ad+v kv+i+prG+ alG+++slP++   l+++++l +++      r+ae+++f+ev++Ga+nDl+++tk+a++ vt +Gms+ +g++++ ++ee      +++  + yse+ta+ iD ev++ii  +y +a ++l+++k++l +la++Lle+e+i +e+l ++l
  MMETSP1137-20121227|4003_1 281 EVGRFIPTLLLIGFFYMLSRGAMSGMGGAggGIFNVGKSKAVKATK--VDTRFKDVAGLQEAKVEIMEFVDILQNPERYTKLGAKIPKGALLVGPPGCGKTLLAKATAGEAKAPFYSMSGSDFIEMFVGVGPSRVRDLFAQARANAPCLVFIDEIDAVGRARGRGgFNGGNDERENTLXQLLIELDGFNPSTGIVVLAGTNRPDILDPALLRPGRFDRQVVVDKPDIKGRAEIFAVHLAHIKLDKDIETYarKMAALTPGFSGAEVANVCNEAALIAARRKLKVVGQECFDAAIDRVIAGLEKKDLTIDPRERRVIAFHEAGHALVGWVLEHADPVMKVSIVPRGKgALGYSQSLPRD-VPLYTESQLADMMC----IRAAEDVVFNEVSSGAQNDLERVTKMAHSQVTVFGMSDAVGPLSFGNQEE------SSTLYRPYSEKTAQLIDGEVETIIATSYARAVDLLRKHKDQLTKLAEALLEREVIGTEDLIRVL 764
                 56789998888888888888899999877445*******9977766..99******************************************************************************************************************99*******************************************************************************99864449*******************************************************************************************************98.99999999998765....59********************************************9883......4456779****************************************************98876 PP

>> TIGR01242  26Sp45: 26S proteasome subunit P45 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  246.3   0.5     3e-76   1.1e-73     116     363 ..     326     575 ..     314     576 .. 0.95

  Alignments for each domain:
  == domain 1    score: 246.3 bits;  conditional E-value: 3e-76
   TIGR01242 116 rpevsyediGGlekqlreireavelplkkpelfeevGieppkGvllyGppGtGktllakavaeetnatfirvvgselvkkyiGeGarlvrevfklakekapsiifideidaiaakrlds.stsGdrevqrtllqllaeldGfdprgnvkviaatnrldildpallrpGrfdrlievplpdleGrleilkihtrkmklaedvdl..eelaklteGasGadlkaivteaGmfaireerdkvtmedflkavekv 363
                 + + +++d+ Gl++   ei e v++ l++pe + ++G + pkG ll GppG+Gktllaka a e++a f  + gs++++ ++G G + vr++f  a+  ap+++fideida++  r      +G+ e + tl qll eldGf+p   + v+a tnr+dildpallrpGrfdr + v  pd++Gr ei+ +h  ++kl +d++   +++a lt G+sGa++  ++ ea + a r++ ++v +e f  a+++v
  MMETSP1137-20121227|4003_1 326 KVDTRFKDVAGLQEAKVEIMEFVDI-LQNPERYTKLGAKIPKGALLVGPPGCGKTLLAKATAGEAKAPFYSMSGSDFIEMFVGVGPSRVRDLFAQARANAPCLVFIDEIDAVGRARGRGgFNGGNDERENTLXQLLIELDGFNPSTGIVVLAGTNRPDILDPALLRPGRFDRQVVVDKPDIKGRAEIFAVHLAHIKLDKDIETyaRKMAALTPGFSGAEVANVCNEAALIAARRKLKVVGQECFDAAIDRV 575
                 56789******************98.9*************************************************************************************98776651678999**************************************************************************9953489******************************************98 PP

>> TIGR01243  CDC48: AAA family ATPase, CDC48 subfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  230.0   0.2   3.1e-71   1.1e-68     449     693 ..     328     576 ..     319     674 .. 0.93

  Alignments for each domain:
  == domain 1    score: 230.0 bits;  conditional E-value: 3.1e-71
   TIGR01243 449 nvkwediggleevkqelreavewplkakevfeklgirppkgvllfgppgtgktllakavatesganfiavrgpeilskwvgesekaireifrkarqaapaiifldeidaiapargadl...seavtdrivnqllteldgleensdvvviaatnrpdildpallrpgrldrlilvpapdeearleifkihtrslplaedvdl..eelakktegytgadieavvreaalaalresvksvakekleaeekeil 693
                 + +++d+ gl+e+k e+ e v+  l+++e + klg + pkg ll gppg gktllaka a e++a f ++ g + +  +vg    ++r++f +ar  ap+++f+deida+  arg+     ++   ++ + qll eldg+++++++vv+a tnrpdildpallrpgr+dr ++v  pd + r eif +h  +++l +d++   +++a  t g++ga+++ v+ eaal a r+ +k v +e ++a  + ++
  MMETSP1137-20121227|4003_1 328 DTRFKDVAGLQEAKVEIMEFVDI-LQNPERYTKLGAKIPKGALLVGPPGCGKTLLAKATAGEAKAPFYSMSGSDFIEMFVGVGPSRVRDLFAQARANAPCLVFIDEIDAVGRARGRGGfngGNDERENTLXQLLIELDGFNPSTGIVVLAGTNRPDILDPALLRPGRFDRQVVVDKPDIKGRAEIFAVHLAHIKLDKDIETyaRKMAALTPGFSGAEVANVCNEAALIAARRKLKVVGQECFDAAIDRVI 576
                 5799*****************96.9*****************************************************************************************98641114556678999********************************************************************954499**********************************99998766664 PP

>> TIGR03689  pup_AAA: proteasome ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  135.5   0.1   1.4e-42   5.1e-40     177     389 ..     327     526 ..     313     551 .. 0.89

  Alignments for each domain:
  == domain 1    score: 135.5 bits;  conditional E-value: 1.4e-42
   TIGR03689 177 PdvtyadiGGldsqieqirdavelPflhkelyreydlkpPkGvllyGPPGcGktliakavanslaekvaedgeaksyflnikGPellnkyvGeterqirliferarekaaegrPvvvffdemdslfrtrGsGv...ssdvettvvPqllaeldGveslenviviGasnredlidPailrPGrldvkirierPdaeaaadilakyltedlPleedla 389
                  d  ++d+ Gl++   +i + v++ ++++e y++ + k PkG ll GPPGcGktl+aka a           eak+ f ++ G ++++ +vG    ++r +f++ar +a    P +vf+de+d++ r+rG G      d     + qll eldG +    ++v+  +nr d++dPa+lrPGr+d ++ +++Pd ++ a+i+a +l+ ++ l++d+ 
  MMETSP1137-20121227|4003_1 327 VDTRFKDVAGLQEAKVEIMEFVDI-LQNPERYTKLGAKIPKGALLVGPPGCGKTLLAKATAG----------EAKAPFYSMSGSDFIEMFVGVGPSRVRDLFAQARANA----PCLVFIDEIDAVGRARGRGGfngGNDERENTLXQLLIELDGFNPSTGIVVLAGTNRPDILDPALLRPGRFDRQVVVDKPDIKGRAEIFAVHLA-HIKLDKDIE 526
                 6889**********99*******8.799******************************9874..........56889*****************************876....*****************8752224566666789**********************************************************96.466666665 PP

>> TIGR00763  lon: ATP-dependent protease La
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.3   0.0   1.1e-08   4.1e-06     326     434 ..     332     438 ..     320     448 .. 0.83

  Alignments for each domain:
  == domain 1    score: 23.3 bits;  conditional E-value: 1.1e-08
   TIGR00763 326 edHyglkkvKeRilEylavk...klrkklkgki...lclvGPPGVGKtSlaksiAkalnrkfvrlslGGlkDvaeikGHRrtYvGalPGkiiqglkkvktenP.lillDEiDKlgs 434
                 +d  gl++ K  i+E++ +    ++  kl +ki     lvGPPG GKt lak+ A   +  f  +s  G +D  e+      +vG  P ++ + + +++ + P l+++DEiD +g+
  MMETSP1137-20121227|4003_1 332 KDVAGLQEAKVEIMEFVDILqnpERYTKLGAKIpkgALLVGPPGCGKTLLAKATAGEAKAPFYSMS--G-SDFIEM------FVGVGPSRVRDLFAQARANAPcLVFIDEIDAVGR 438
                 57789*************985554455566666444689***********************9887..4.577775......9*******************96688*****9995 PP

>> TIGR00390  hslU: ATP-dependent protease HslVU, ATPase subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   3.5e-06    0.0013      46     103 ..     364     419 ..     332     424 .. 0.90
   2 ?    0.6   0.0      0.12        45     241     262 ..     418     439 ..     408     461 .. 0.81

  Alignments for each domain:
  == domain 1    score: 15.5 bits;  conditional E-value: 3.5e-06
   TIGR00390  46 vPknilmiGstGvGkteiarrlaklaeaPfikveatkftevGyvGrdveslvrdlvda 103
                 +Pk  l++G+ G Gkt +a+  a  a+aPf  +  + f e+ +vG    s vrdl  +
  MMETSP1137-20121227|4003_1 364 IPKGALLVGPPGCGKTLLAKATAGEAKAPFYSMSGSDFIEM-FVGVG-PSRVRDLFAQ 419
                 6***************************************7.89865.6889999765 PP

  == domain 2    score: 0.6 bits;  conditional E-value: 0.12
   TIGR00390 241 avdrveesGiifideidkiakk 262
                 a  r++   ++fideid + + 
  MMETSP1137-20121227|4003_1 418 AQARANAPCLVFIDEIDAVGRA 439
                 5567888899*******98754 PP

>> TIGR00635  ruvB: Holliday junction DNA helicase RuvB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0     7e-06    0.0026      32      94 ..     367     437 ..     341     440 .. 0.72

  Alignments for each domain:
  == domain 1    score: 14.7 bits;  conditional E-value: 7e-06
   TIGR00635  32 hvllyGPPGlGkttlakiiakelgvklkitsgpal.........ekpgDlaailtaleegdvlfiDeihrls 94 
                   ll+GPPG Gkt lak  a e ++    +sg  +         ++ +Dl a     ++  ++fiDei ++ 
  MMETSP1137-20121227|4003_1 367 GALLVGPPGCGKTLLAKATAGEAKAPFYSMSGSDFiemfvgvgpSRVRDLFAQA-RANAPCLVFIDEIDAVG 437
                 579*******************99999888887652222222223445555443.33455677788877765 PP

>> TIGR00382  clpX: ATP-dependent Clp protease, ATP-binding subunit ClpX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.0   1.3e-05    0.0048     120     196 ..     368     438 ..     351     444 .. 0.78

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 1.3e-05
   TIGR00382 120 illiGptGsGktllaqtlakeldvpfaiadattlteaGyvGedvenillkllqaadydvekaekGiiyideidkiar 196
                  ll+Gp G Gktlla++ a e + pf     + + e  +vG     +   l+ +a  +       +++ideid + r
  MMETSP1137-20121227|4003_1 368 ALLVGPPGCGKTLLAKATAGEAKAPFYSMSGSDFIEM-FVGVGPSRV-RDLFAQARAN----APCLVFIDEIDAVGR 438
                 589**********************987777777775.777665554.5566555544....457899999998877 PP

>> TIGR03922  T7SS_EccA: type VII secretion AAA-ATPase EccA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.0   1.2e-05    0.0045     272     333 ..     328     386 ..     318     465 .. 0.83

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 1.2e-05
   TIGR03922 272 eaeLakqiGlervkeqvaalkssvevalvRaerGlavaqrskHlllaGPPGtGkttiArvva 333
                 + + + + Gl+++k ++  + + ++   + ++ G ++++     ll+GPPG Gkt +A++ a
  MMETSP1137-20121227|4003_1 328 DTRFKDVAGLQEAKVEIMEFVDILQNPERYTKLGAKIPKG---ALLVGPPGCGKTLLAKATA 386
                 556777889***************9999999999999865...69***********999876 PP

>> TIGR02640  gas_vesic_GvpN: gas vesicle protein GvpN
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   6.5e-05     0.024      25      56 ..     369     400 ..     342     414 .. 0.77

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 6.5e-05
   TIGR02640  25 hlrGPaGtGktslalhvakkrdrPvvllnGda 56 
                  l+GP G+Gkt la + a + + P   + G +
  MMETSP1137-20121227|4003_1 369 LLVGPPGCGKTLLAKATAGEAKAPFYSMSGSD 400
                 589**********************9999987 PP

>> TIGR00368  TIGR00368: Mg chelatase-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   0.0   0.00022     0.081     214     232 ..     368     386 ..     318     391 .. 0.84

  Alignments for each domain:
  == domain 1    score: 9.3 bits;  conditional E-value: 0.00022
   TIGR00368 214 llllGPPGsGktllakrlq 232
                  ll+GPPG Gktllak   
  MMETSP1137-20121227|4003_1 368 ALLVGPPGCGKTLLAKATA 386
                 69*************9865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (917 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       186  (0.0453437); expected 82.0 (0.02)
Passed bias filter:                      163  (0.0397367); expected 82.0 (0.02)
Passed Vit filter:                        45  (0.0109703); expected 4.1 (0.001)
Passed Fwd filter:                        11  (0.00268162); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.84u 0.18s 00:00:01.02 Elapsed: 00:00:00.99
# Mc/sec: 1222.57
//
Query:       MMETSP1137-20121227|4004_1  [L=127]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (127 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        49  (0.0119454); expected 82.0 (0.02)
Passed bias filter:                       38  (0.00926377); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.12s 00:00:00.27 Elapsed: 00:00:00.26
# Mc/sec: 644.72
//
Query:       MMETSP1137-20121227|4005_1  [L=185]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (185 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        44  (0.0107265); expected 82.0 (0.02)
Passed bias filter:                       41  (0.00999512); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.16s 00:00:00.34 Elapsed: 00:00:00.54
# Mc/sec: 452.18
//
Query:       MMETSP1137-20121227|4006_1  [L=747]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (747 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       105  (0.0255973); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.47u 0.19s 00:00:00.65 Elapsed: 00:00:00.59
# Mc/sec: 1671.12
//
Query:       MMETSP1137-20121227|4009_1  [L=89]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (89 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        45  (0.0109703); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.17s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 419.54
//
Query:       MMETSP1137-20121227|4010_1  [L=665]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (665 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       116  (0.0282789); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.15s 00:00:00.56 Elapsed: 00:00:00.53
# Mc/sec: 1656.09
//
Query:       MMETSP1137-20121227|4011_1  [L=421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.01   13.6   0.0      0.027   12.2   0.0    1.7  1  TIGR02989 Sig-70_gvs1: RNA polymerase sigma-70 factor, Rhodopirellula/Verrucomicrobium family


Domain annotation for each model (and alignments):
>> TIGR02989  Sig-70_gvs1: RNA polymerase sigma-70 factor, Rhodopirellula/Verrucomicrobium family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   6.7e-06     0.027       2      48 ..     185     231 ..     184     243 .. 0.91

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 6.7e-06
   TIGR02989   2 afaalltrhqrsvrafvrslvadlddadDvlQetfvtawekldefee 48 
                 af+ l++ +q++  af++  + ++ +  D+lQ + +++++k+ + ++
  MMETSP1137-20121227|4011_1 185 AFLMLFHTAQERAIAFLTENLDQVSSYGDILQLVILELIRKVVRANP 231
                 7999*************************************877655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (421 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       192  (0.0468064); expected 82.0 (0.02)
Passed bias filter:                      117  (0.0285227); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.15s 00:00:00.48 Elapsed: 00:00:00.34
# Mc/sec: 1634.34
//
Query:       MMETSP1137-20121227|4013_1  [L=511]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (511 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        76  (0.0185275); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.10s 00:00:00.44 Elapsed: 00:00:01.00
# Mc/sec: 674.46
//
Query:       MMETSP1137-20121227|4014_1  [L=376]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00037   16.5   0.0       0.19    7.6   0.0    2.3  2  TIGR00198 cat_per_HPI: catalase/peroxidase HPI


Domain annotation for each model (and alignments):
>> TIGR00198  cat_per_HPI: catalase/peroxidase HPI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.6   0.0   4.7e-05      0.19      91     175 ..     120     203 ..     103     210 .. 0.62
   2 !    6.6   0.0   9.2e-05      0.38     224     340 ..     216     337 ..     209     362 .. 0.74

  Alignments for each domain:
  == domain 1    score: 7.6 bits;  conditional E-value: 4.7e-05
   TIGR00198  91 agtyriidgrggaadgsqrfaplnswpdnvnldkarrllwpikkky..grklswadliilagtvaledmglkvfgfaagredifepd 175
                 a +y+    +g   dgs+rf        n +l  a   +  i+       + s+ad++ lag+ a+e +g        gred   p+
  MMETSP1137-20121227|4014_1 120 ALSYQKDSDKG-GIDGSIRFELE--RESNAELKAAADAVTEIRSGLlrTTQASYADVLALAGAEAIEVAGGPRCLVQIGREDAKAPE 203
                 44454433333.34666666543..34566666666666666665411345677777777777777777777777777777777766 PP

  == domain 2    score: 6.6 bits;  conditional E-value: 9.2e-05
   TIGR00198 224 saaqeirvtfarmgmndeetvaliagghtlgkchg...agkaelvgpdpeaapieeq.glgwksqygkgvgadtltsglev.vwtttptkfdnnyleilfkyewelkkspagaiqfeavdak 340
                 ++a+ +r++f+  g+  ++ val+    tl ++       ka      p+  +i+++  +g   +   g      ts l v v  ++  kfdn+y++ l++       sp  +     ++ k
  MMETSP1137-20121227|4014_1 216 ASATTLRSAFGGSGLSAQDIVALLGAVGTLKQTATrlrKEKAASAADAPDDDDIDQEdVFGVSGSVAYGSVPTGKTSSLSVnVKGDKLGKFDNSYFKSLLSSANSNSLSPLDRALLSDKELK 337
                 68999******************999889988876222456667777888899975424566666555555566666666624567889**********99888888888776666666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (376 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       118  (0.0287665); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.15s 00:00:00.48 Elapsed: 00:00:00.65
# Mc/sec: 763.51
//
Query:       MMETSP1137-20121227|4015_1  [L=313]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (313 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        76  (0.0185275); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.17s 00:00:00.43 Elapsed: 00:00:00.37
# Mc/sec: 1116.56
//
Query:       MMETSP1137-20121227|4016_1  [L=68]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (68 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        56  (0.0136519); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.27
# Mc/sec: 332.42
//
Query:       MMETSP1137-20121227|4017_1  [L=150]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (150 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       105  (0.0255973); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.13s 00:00:00.30 Elapsed: 00:00:00.28
# Mc/sec: 682.70
//
Query:       MMETSP1137-20121227|4018_1  [L=109]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (109 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        24  (0.0058508); expected 82.0 (0.02)
Passed bias filter:                       18  (0.0043881); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.15s 00:00:00.31 Elapsed: 00:00:00.25
# Mc/sec: 575.47
//
Query:       MMETSP1137-20121227|4019_1  [L=211]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (211 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       119  (0.0290102); expected 82.0 (0.02)
Passed bias filter:                      103  (0.0251097); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.13s 00:00:00.34 Elapsed: 00:00:00.35
# Mc/sec: 795.71
//
Query:       MMETSP1137-20121227|4021_1  [L=414]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (414 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       132  (0.0321794); expected 82.0 (0.02)
Passed bias filter:                      108  (0.0263286); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.15s 00:00:00.46 Elapsed: 00:00:00.41
# Mc/sec: 1332.77
//
Query:       MMETSP1137-20121227|4022_1  [L=422]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.2e-24   83.6   0.4    4.5e-24   83.1   0.3    1.1  1  TIGR04171 RNR_1b_NrdF: ribonucleoside-diphosphate reductase, class 1b, beta subunit


Domain annotation for each model (and alignments):
>> TIGR04171  RNR_1b_NrdF: ribonucleoside-diphosphate reductase, class 1b, beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.1   0.3   1.1e-27   4.5e-24      16     308 ..      34     317 ..      27     324 .. 0.81

  Alignments for each domain:
  == domain 1    score: 83.1 bits;  conditional E-value: 1.1e-27
   TIGR04171  16 evwekllkqfWldeeiplsnDlksWkelseeekelvkkvltgLtlLDtlqsevGmpaliesveteqekavlnniafmeavHAksYssifstllst.eeidelfeWveenealqkkaelilevYeeledpellkakvasvllesfLfYsgFylPlylagqgklt.nsaeiiklilrDesiHgvyvglkaqelleklseeeqeelkkevlelleelyeneekytee.l.Ydevglte.dvkkfvrYnankalmnlGfealfeeeaeevnpvvlnglstetknhDfFskkgngYklgkvee 308
                 e+++k  + fW+ eei l++D+++W++l+++e++ +++vl+  +  D + +e+  + ++++v+ ++ +  + +  +me++H   Ys +  t++++ ee  +lf+ +++ + + kka+  l+  ++  ++   ++ va +++e++ f+sg +  +y++ +  l+   +   +li rDe +H  +  l+++ l +kl++e+ +e+ + +       ++ e++++ + l  d +g+++  +++++++ a++ l  lG  +l+ +     np     l +   + +fF k+   Y+++ v +
  MMETSP1137-20121227|4022_1  34 EMYKKAEASFWTAEEIDLAHDMNDWEKLNDKERHFISHVLAFFAASDGIVNENLCERFASEVQIPEARCFYGFQIAMENIHSETYSLLIDTYVTNnEEKTRLFNAIDTVPCVTKKANWALKWISNA-SR-FAERLVAFAVVEGI-FFSGSFCAIYWLKKRGLMpGLTFSNELISRDEGMHCDFACLLYKMLDNKLDTETVHEIVSDA-------VAMEKEFVCDaLpVDLIGMNSrTMSQYIEFVADRLLYSLGAPKLYGAA----NPFDWMELISLQGKTNFFEKRVGEYQKAGVMN 317
                 689999*************************************************************************************9876156779********************99994.33.69999999999996.77888888888766555505555667999***************999999987655554444.......44444444330224667776515789*******************999....77755555544555679999988896655544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (422 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       102  (0.0248659); expected 82.0 (0.02)
Passed bias filter:                       97  (0.023647); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.31u 0.17s 00:00:00.48 Elapsed: 00:00:00.40
# Mc/sec: 1392.49
//
Query:       MMETSP1137-20121227|4023_1  [L=198]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00033   18.0   0.1     0.0028   15.0   0.0    2.0  2  TIGR01840 esterase_phb: esterase, PHB depolymerase family


Domain annotation for each model (and alignments):
>> TIGR01840  esterase_phb: esterase, PHB depolymerase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.0     0.016        66      12      50 ..      16      59 ..       5      67 .. 0.67
   2 !   15.0   0.0   6.7e-07    0.0028      79     131 ..     126     180 ..     119     186 .. 0.86

  Alignments for each domain:
  == domain 1    score: 0.7 bits;  conditional E-value: 0.016
   TIGR01840 12 kralvlalHGCgQtasasvidkg.....wkaaAdkYgfvvvaPe 50
                + +lv  +HG +  a  +   +g     + ++A++  f+ v P+
  MMETSP1137-20121227|4023_1 16 PLPLVFMFHGWQELAQVYAGIHGgwsdgFADVAEEKCFLTVWPQ 59
                67999999999888877764333433445567777777777775 PP

  == domain 2    score: 15.0 bits;  conditional E-value: 6.7e-07
   TIGR01840  79 lkqlidavkanysIDpnrvyvtGLSaGggetaVllat..ypdvfAgaAsnaglpy 131
                 +  l+d + + + +D+++vy +G S G+  +  l+a       fA+ A+ aglp 
  MMETSP1137-20121227|4023_1 126 VLSLVDTLTQSLLVDAQHVYAAGCSNGAMLVYDLAADerSASRFAAFAADAGLPH 180
                 6789***************************999996224678*********996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (198 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        93  (0.0226719); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.21u 0.16s 00:00:00.37 Elapsed: 00:00:00.33
# Mc/sec: 791.93
//
Query:       MMETSP1137-20121227|4025_1  [L=406]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (406 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        86  (0.0209654); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.17s 00:00:00.45 Elapsed: 00:00:00.32
# Mc/sec: 1674.61
//
Query:       MMETSP1137-20121227|4026_1  [L=124]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      0.001   15.4   0.0     0.0012   15.2   0.0    1.0  1  TIGR01389 recQ: ATP-dependent DNA helicase RecQ
     0.0017   13.9   0.1      0.002   13.7   0.1    1.0  1  TIGR04121 DEXH_lig_assoc: DEXH box helicase, DNA ligase-associated
  ------ inclusion threshold ------
      0.015   12.2   0.0      0.015   12.1   0.0    1.0  1  TIGR04095 dnd_restrict_1: DNA phosphorothioation system restriction enzyme
      0.018   11.6   0.1       0.02   11.4   0.1    1.1  1  TIGR00643 recG: ATP-dependent DNA helicase RecG


Domain annotation for each model (and alignments):
>> TIGR01389  recQ: ATP-dependent DNA helicase RecQ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0   1.1e-06    0.0012     266     324 ..      10      68 ..       4      84 .. 0.90

  Alignments for each domain:
  == domain 1    score: 15.2 bits;  conditional E-value: 1.1e-06
   TIGR01389 266 aqekFleddvkvvvatvaFGmGidksdvRfvihldlPknlesyyqeaGRaGRDGlkaea 324
                   e F  +++ v+v t +   G+d ++v +v  l + ++   y   aGR GR G+   +
  MMETSP1137-20121227|4026_1  10 VMEMFRANQTSVLVTTASATRGLDFPQVTHVFNLGIVGAPVDYLHRAGRIGRVGQSERG 68 
                 5789**************************************************97655 PP

>> TIGR04121  DEXH_lig_assoc: DEXH box helicase, DNA ligase-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   0.1   1.9e-06     0.002     293     344 ..       9      60 ..       4      85 .. 0.77

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 1.9e-06
   TIGR04121 293 kveaalkagklravvcTssLdLGvDfgdvdlviqvGspkgvaRllQRiGRsn 344
                 +v ++++a++  ++v+T+s   G+Df +v  v ++G        l R+GR +
  MMETSP1137-20121227|4026_1   9 RVMEMFRANQTSVLVTTASATRGLDFPQVTHVFNLGIVGAPVDYLHRAGRIG 60 
                 68899999*************************9776666666666666644 PP

>> TIGR04095  dnd_restrict_1: DNA phosphorothioation system restriction enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   1.5e-05     0.015     330     386 ..       9      65 ..       2      97 .. 0.87

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 1.5e-05
   TIGR04095 330 ellkqfesgelqalvairCLDeGvDvPairtayiLasssnPrqFiqRRGRvLRkspG 386
                 ++++ f +++  +lv+      G+D P++ + + L     P +++ R GR+ R  + 
  MMETSP1137-20121227|4026_1   9 RVMEMFRANQTSVLVTTASATRGLDFPQVTHVFNLGIVGAPVDYLHRAGRIGRVGQS 65 
                 5788999********************************************986554 PP

>> TIGR00643  recG: ATP-dependent DNA helicase RecG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.1   1.9e-05      0.02     499     552 ..       9      61 ..       4      81 .. 0.74

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 1.9e-05
   TIGR00643 499 evleeFrekevdiLvaTtviEvGvdvPnatvmviedaeRfGlsqLHQLRGRvgR 552
                 +v+e Fr++++++Lv+T     G+d P++t +         +  LH   GR+gR
  MMETSP1137-20121227|4026_1   9 RVMEMFRANQTSVLVTTASATRGLDFPQVTHVFNLGIVGAPVDYLHRA-GRIGR 61 
                 79**************************99765444333345566653.44444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (124 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        72  (0.0175524); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.17u 0.18s 00:00:00.35 Elapsed: 00:00:00.27
# Mc/sec: 606.17
//
Query:       MMETSP1137-20121227|4027_1  [L=147]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (147 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        64  (0.0156021); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.16s 00:00:00.33 Elapsed: 00:00:00.31
# Mc/sec: 625.88
//
Query:       MMETSP1137-20121227|4030_1  [L=279]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (279 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       101  (0.0246221); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.20s 00:00:00.44 Elapsed: 00:00:00.35
# Mc/sec: 1052.14
//
Query:       MMETSP1137-20121227|4031_1  [L=205]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (205 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        60  (0.014627); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.15s 00:00:00.34 Elapsed: 00:00:00.30
# Mc/sec: 901.93
//
Query:       MMETSP1137-20121227|4032_1  [L=523]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (523 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       131  (0.0319356); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.15s 00:00:00.50 Elapsed: 00:00:00.45
# Mc/sec: 1534.01
//
Query:       MMETSP1137-20121227|4033_1  [L=275]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.017   12.3   0.3      0.023   11.9   0.2    1.2  1  TIGR02349 DnaJ_bact: chaperone protein DnaJ


Domain annotation for each model (and alignments):
>> TIGR02349  DnaJ_bact: chaperone protein DnaJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.2   5.6e-06     0.023      13      72 ..      94     153 ..      91     205 .. 0.70

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 5.6e-06
   TIGR02349  13 seeeikkAYrklakkyHPDrnkgekeaeekfkeineAyevLsdee.kraqYDqfghagleg 72 
                 se+ + + Y +  k  HP  +  ++  ++ f   +eAy+ Lsd + kr++Y +   +++++
  MMETSP1137-20121227|4033_1  94 SERALTRVYDEAKKCCHPEWSF-HPRRKQGFELLTEAYDTLSDRNgKRDEYVRKVVNEARE 153
                 6677888899999999*****9.99******************865899997754444433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (275 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       164  (0.0399805); expected 82.0 (0.02)
Passed bias filter:                      102  (0.0248659); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.26u 0.17s 00:00:00.43 Elapsed: 00:00:00.39
# Mc/sec: 930.69
//
Query:       MMETSP1137-20121227|4034_1  [L=257]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (257 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        64  (0.0156021); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.15s 00:00:00.37 Elapsed: 00:00:00.56
# Mc/sec: 605.74
//
Query:       MMETSP1137-20121227|4035_1  [L=325]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (325 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        42  (0.0102389); expected 82.0 (0.02)
Passed bias filter:                       31  (0.00755729); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.15s 00:00:00.38 Elapsed: 00:00:00.36
# Mc/sec: 1191.57
//
Query:       MMETSP1137-20121227|4036_1  [L=720]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (720 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       143  (0.034861); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.14s 00:00:00.59 Elapsed: 00:00:00.55
# Mc/sec: 1727.86
//
Query:       MMETSP1137-20121227|4037_1  [L=197]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.8e-15   52.9   0.0    1.1e-14   52.3   0.0    1.3  1  TIGR02180 GRX_euk: glutaredoxin
    1.4e-11   42.3   0.0    2.1e-11   41.8   0.0    1.3  1  TIGR02181 GRX_bact: glutaredoxin 3
      1e-09   36.1   0.0    1.8e-09   35.3   0.0    1.4  1  TIGR02190 GlrX-dom: glutaredoxin-family domain
    6.6e-09   33.5   0.0    8.7e-09   33.1   0.0    1.3  1  TIGR02189 GlrX-like_plant: glutaredoxin-like family
      4e-05   21.9   0.0    6.2e-05   21.3   0.0    1.3  1  TIGR02196 GlrX_YruB: glutaredoxin-like protein, YruB-family
     0.0011   16.9   0.0     0.0018   16.2   0.0    1.4  1  TIGR00365 TIGR00365: monothiol glutaredoxin, Grx4 family


Domain annotation for each model (and alignments):
>> TIGR02180  GRX_euk: glutaredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.3   0.0   1.6e-17   1.1e-14       1      71 [.     105     174 ..     105     186 .. 0.93

  Alignments for each domain:
  == domain 1    score: 52.3 bits;  conditional E-value: 1.6e-17
   TIGR02180   1 VvvfsKsyCpYckkakelLkklkvkkalevveldkl.engselqdyLkeltgqrtVPrifingkfiGGsddl 71 
                 Vv+fs ++ p ckkak lL+   v+  ++vveld+  ++g+  ++ L ++tg+++VP+i+ing+ iGG+dd 
  MMETSP1137-20121227|4037_1 105 VVMFSWTVSPACKKAKRLLALAGVE--VKVVELDQPwSEGNPKRAQLGRMTGKSSVPSIWINGEYIGGCDDG 174
                 89******************77799..9*******87999******************************95 PP

>> TIGR02181  GRX_bact: glutaredoxin 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.8   0.0     3e-14   2.1e-11       1      66 [.     105     173 ..     105     195 .. 0.84

  Alignments for each domain:
  == domain 1    score: 41.8 bits;  conditional E-value: 3e-14
   TIGR02181   1 vviYtkksCpycsrAkalLeekgvefeeievdkdk....eareemierskgrrtvPQifigdvhvGGcdd 66 
                 vv++++++ p c++Ak+lL+  gve++ +e+d+       +r+++   + g+++vP i+i+ + +GGcdd
  MMETSP1137-20121227|4037_1 105 VVMFSWTVSPACKKAKRLLALAGVEVKVVELDQPWsegnPKRAQLGRMT-GKSSVPSIWINGEYIGGCDD 173
                 89****************************9985422325556655555.8******************9 PP

>> TIGR02190  GlrX-dom: glutaredoxin-family domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.3   0.0   2.6e-12   1.8e-09      10      73 ..     105     173 ..      97     176 .. 0.87

  Alignments for each domain:
  == domain 1    score: 35.3 bits;  conditional E-value: 2.6e-12
   TIGR02190  10 vsvftkpGCPfCakakavLkekGldfeeivLgkdir.....trslravtGattvPqvfinGkliGgsde 73 
                 v++f+    P C kak +L+  G++ + + L++  +        l+ +tG+ +vP ++inG++iGg d+
  MMETSP1137-20121227|4037_1 105 VVMFSWTVSPACKKAKRLLALAGVEVKVVELDQPWSegnpkRAQLGRMTGKSSVPSIWINGEYIGGCDD 173
                 8999999*************************965421111568999*******************985 PP

>> TIGR02189  GlrX-like_plant: glutaredoxin-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.1   0.0   1.3e-11   8.7e-09       2      77 ..      97     173 ..      96     197 .] 0.86

  Alignments for each domain:
  == domain 1    score: 33.1 bits;  conditional E-value: 1.3e-11
   TIGR02189   2 rrlvsekavvifskssCClshvvkrLllelGvnPavveldkeaeakeiekalle.lgskeavPvvfvGGklvGglee 77 
                 r+++   +vv+fs +    +  +krLl   Gv+  vveld+  +  + ++a l  +++k++vP +++ G+++Gg ++
  MMETSP1137-20121227|4037_1  97 RKIIGSAPVVMFSWTVSPACKKAKRLLALAGVEVKVVELDQPWSEGNPKRAQLGrMTGKSSVPSIWINGEYIGGCDD 173
                 6788899*********************************9877767666655449******************985 PP

>> TIGR02196  GlrX_YruB: glutaredoxin-like protein, YruB-family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3   0.0   9.1e-08   6.2e-05       2      65 ..     105     172 ..     104     179 .. 0.85

  Alignments for each domain:
  == domain 1    score: 21.3 bits;  conditional E-value: 9.1e-08
   TIGR02196   2 vkvYttpwCppCkkakeyLkskgiafeeidvek....dsaaaeellkklgqrsvPvivigekivvGFd 65 
                 v +++ +  p Ckkak+ L  +g++ + ++ ++    ++  +++l + +g+ svP i i+++ + G d
  MMETSP1137-20121227|4037_1 105 VVMFSWTVSPACKKAKRLLALAGVEVKVVELDQpwseGNPKRAQLGRMTGKSSVPSIWINGEYIGGCD 172
                 8899999*******************9999976332256678999***************88887765 PP

>> TIGR00365  TIGR00365: monothiol glutaredoxin, Grx4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0   2.7e-06    0.0018       5      82 ..      96     172 ..      92     174 .. 0.68

  Alignments for each domain:
  == domain 1    score: 16.2 bits;  conditional E-value: 2.7e-06
   TIGR00365   5 ikeqvkenkvvlymkGtpelpqCGfsakavqilkalgvefatvnv....ledeeireelkeysnWPtiPqlyvkgelvGGcd 82 
                 +++ + + +vv++    +  p C   +ka ++l  +gve++ v++     e +  r++l +++    +P ++++ge++GGcd
  MMETSP1137-20121227|4037_1  96 LRKIIGSAPVVMFSW--TVSPAC---KKAKRLLALAGVEVKVVELdqpwSEGNPKRAQLGRMTGKSSVPSIWINGEYIGGCD 172
                 556666666666643..445666...4555666666666666665212123455789999999999***************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (197 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        78  (0.0190151); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.18u 0.16s 00:00:00.34 Elapsed: 00:00:00.34
# Mc/sec: 764.76
//
Query:       MMETSP1137-20121227|4038_1  [L=61]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        53  (0.0129205); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.43
# Mc/sec: 187.24
//
Query:       MMETSP1137-20121227|4039_1  [L=167]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (167 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       117  (0.0285227); expected 82.0 (0.02)
Passed bias filter:                      103  (0.0251097); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.14s 00:00:00.32 Elapsed: 00:00:00.40
# Mc/sec: 551.05
//
Query:       MMETSP1137-20121227|4041_1  [L=283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0057   13.5   0.1     0.0077   13.1   0.1    1.1  1  TIGR01622 SF-CC1: splicing factor, CC1-like family


Domain annotation for each model (and alignments):
>> TIGR01622  SF-CC1: splicing factor, CC1-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.1   0.1   1.9e-06    0.0077     317     442 ..      51     176 ..      32     186 .. 0.77

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 1.9e-06
   TIGR01622 317 eseqsgldlnteereqldekldrddekgsgalaiagtdskavqmaklsrdglvaklipsrel.qaslsetsvlkalaeasfvpsevnlaseclvLsNmFdpateeeenfdkeikdDvkeEcskkggv 442
                 es+ +g  + + + +  d+  d++d +    +a ag++ +a+++ ++  +  +a+++   +  ++  ++ + +ka a++s     v l  + l L+     a+ ++ ++d++++ D  + c   g+ 
  MMETSP1137-20121227|4041_1  51 ESAAAG-SVTAASASASDATADNSDAALMDNTAQAGANAGAANLTASATPPTNADVTNNADAsPCAAADAGDAKACAAPSGPYEAVWLRMRGLPLHEEVAQAVASDADWDTDLETDLLNGCWVSGEL 176
                 444444.355566667778888888888889999999999******999999998877655313445566666666666655545********************************9999777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (283 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        82  (0.0199902); expected 82.0 (0.02)
Passed bias filter:                       44  (0.0107265); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.23u 0.17s 00:00:00.40 Elapsed: 00:00:00.37
# Mc/sec: 1009.54
//
Query:       MMETSP1137-20121227|4042_1  [L=204]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (204 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        81  (0.0197465); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.14s 00:00:00.33 Elapsed: 00:00:00.48
# Mc/sec: 560.95
//
Query:       MMETSP1137-20121227|4043_1  [L=271]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (271 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       126  (0.0307167); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.15s 00:00:00.38 Elapsed: 00:00:00.28
# Mc/sec: 1233.42
//
Query:       MMETSP1137-20121227|4044_1  [L=245]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (245 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       101  (0.0246221); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.13s 00:00:00.35 Elapsed: 00:00:00.34
# Mc/sec: 951.10
//
Query:       MMETSP1137-20121227|4045_1  [L=209]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0021   13.7   1.8     0.0021   13.6   1.2    1.0  1  TIGR02168 SMC_prok_B: chromosome segregation protein SMC


Domain annotation for each model (and alignments):
>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   1.2   5.1e-07    0.0021     847     936 ..      73     161 ..       2     188 .. 0.51

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 5.1e-07
   TIGR02168 847 eqieeleeeiesleaeieeleeeleeleeeleellkekasleealaelreeleelseelrelekkvkelereleelreklaqlelrleel 936
                 +   +++++ ++  +    ++e+++ + + +++ l ++++le++lae r++ +el++++   e+ +k++ + ++e+  ++a++ +r++e 
  MMETSP1137-20121227|4045_1  73 QIVVRMRDQYAKRVKDTMACNEKIRVIDASIARTLPKQRQLEQELAEKRAQADELRRDIGHGETSMKDAIELAKEAL-QNAKIATRKAEG 161
                 44444444444444444444444444444444444444444444444444444444444444444433333222221.112222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (209 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       291  (0.070941); expected 82.0 (0.02)
Passed bias filter:                      187  (0.0455875); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.26u 0.13s 00:00:00.39 Elapsed: 00:00:00.39
# Mc/sec: 707.33
//
Query:       MMETSP1137-20121227|4046_1  [L=246]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.8e-95  317.3   0.0      2e-95  317.2   0.0    1.0  1  TIGR02129 hisA_euk: phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase
    3.3e-18   64.0   0.0    4.5e-18   63.6   0.0    1.1  1  TIGR00007 TIGR00007: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase
    1.7e-17   61.4   0.0    2.3e-17   61.0   0.0    1.1  1  TIGR03572 WbuZ: glycosyl amidation-associated protein WbuZ
    8.1e-11   39.5   0.0    2.6e-10   37.9   0.0    1.6  1  TIGR00735 hisF: imidazoleglycerol phosphate synthase, cyclase subunit
    4.8e-07   27.4   0.1    9.5e-07   26.4   0.1    1.5  1  TIGR01919 hisA-trpF: bifunctional HisA/TrpF protein
    0.00027   18.2   0.0    0.00045   17.5   0.0    1.3  1  TIGR01163 rpe: ribulose-phosphate 3-epimerase
    0.00038   17.8   0.0     0.0006   17.2   0.0    1.2  1  TIGR01334 modD: modD protein
    0.00055   17.7   0.1       0.02   12.6   0.0    2.1  2  TIGR00734 hisAF_rel: hisA/hisF family protein
     0.0013   15.9   0.0      0.003   14.8   0.0    1.6  1  TIGR01182 eda: 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase
  ------ inclusion threshold ------
      0.017   12.4   0.4        1.1    6.6   0.1    2.1  2  TIGR01768 GGGP-family: geranylgeranylglyceryl phosphate synthase family protein


Domain annotation for each model (and alignments):
>> TIGR02129  hisA_euk: phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  317.2   0.0   4.8e-98     2e-95      26     255 .]       5     233 ..       1     233 [. 0.98

  Alignments for each domain:
  == domain 1    score: 317.2 bits;  conditional E-value: 4.8e-98
   TIGR02129  26 ekesvlktnfvsdksssyyaklykeddvkGahviklGannedaakealsaypgalqvGGGinaenakeyldegaskvivtswlftdekldlerlkelvklvGkerlivdlscrktkdgkrwavainkwqtltdvelneetleklskycdeflihaadveGlkkGideelvkklgeyskikvvyaGGaksledlelvkelskGkvdltiGsaldifgGklvkfedvvkwnk 255
                 e +++ +tnf+++ +s+ +a++yk++++ G+hvi+lG++n  aakeal a+pg+lqvGGGin +na+eyld+gas+vivts++f d+ ld +rl e+ + vG  rl++dlscr+++    ++v++++wq +t++e+ e tl +lsk+c efl+ha+dveG++ Gi+eelv  l+++s+i+v+yaGG++sl+dl+lv++ls Gkvd+++GsaldifgG  +++  vvkw++
  MMETSP1137-20121227|4046_1   5 EPGQAPVTNFEAKIPSKGFAEMYKKSGLAGGHVIMLGQGNSIAAKEALAAHPGGLQVGGGINPSNAQEYLDAGASHVIVTSYVFRDGVLDDSRLAEMEQAVGSSRLVLDLSCRRRISTGPFFVVTDRWQRFTELEVCEATLAELSKHCAEFLVHAVDVEGKQSGIEEELVVALAKWSPIPVTYAGGVRSLDDLQLVQKLSSGKVDVSVGSALDIFGGP-LSYVSVVKWHE 233
                 4678899************************************************************************************************************9999**************************************************************************************************6.9********95 PP

>> TIGR00007  TIGR00007: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.6   0.0   1.1e-20   4.5e-18      68     221 ..      52     216 ..      12     220 .. 0.85

  Alignments for each domain:
  == domain 1    score: 63.6 bits;  conditional E-value: 1.1e-20
   TIGR00007  68 veelevkvqvGGGiRsleavekllelgverviigtaaven....pelvkellkelgsekivvslDakeg......evavkGWkekselslvelakkleelgleeiilTdiekdGtlsGvnveltkelvkeaeveviasGGvssiedvkalkk..lgvkgvivGkAl 221
                 + +    +qvGGGi   ++++++l++g+++vi+ + ++++     + ++e+ +++gs+++v+ l  +++       v++  W+  +el++ e++    +  ++e+++  ++++G+ sG++ el+  l+k + ++v+++GGv+s +d++ ++k  +g  +v vG+Al
  MMETSP1137-20121227|4046_1  52 LAAHPGGLQVGGGIN-PSNAQEYLDAGASHVIVTSYVFRDgvldDSRLAEMEQAVGSSRLVLDLSCRRRistgpfFVVTDRWQRFTELEVCEATLAELSKHCAEFLVHAVDVEGKQSGIEEELVVALAKWSPIPVTYAGGVRSLDDLQLVQKlsSGKVDVSVGSAL 216
                 44556679******5.6789****************9886222267899999999*9*********9999999*99*************999876655566889***********************************************976788889999997 PP

>> TIGR03572  WbuZ: glycosyl amidation-associated protein WbuZ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.0   0.0   5.6e-20   2.3e-17      77     216 ..      59     201 ..      52     218 .. 0.89

  Alignments for each domain:
  == domain 1    score: 61.0 bits;  conditional E-value: 5.6e-20
   TIGR03572  77 ltvgGGiksledvkkllkaGadKvsintaalenpel....ieeiakkfGsQsvvvsidvkkelegskykvysdngrkkteldlvelareleelgagEillnsiDrdGtrkGydlelvktvskavkiPvialGGagslddlvevv 216
                 l vgGGi+   ++++ l+aGa  v++++ ++++  l    + e+ +  Gs  +v+ + ++++++ + + v +d+ ++ tel++ e+  +  +++++E+l++++D +G+++G + elv  ++k   iPv  +GG+ slddl+ v 
  MMETSP1137-20121227|4046_1  59 LQVGGGINP-SNAQEYLDAGASHVIVTSYVFRDGVLddsrLAEMEQAVGSSRLVLDLSCRRRISTGPFFVVTDRWQRFTELEVCEATLAELSKHCAEFLVHAVDVEGKQSGIEEELVVALAKWSPIPVTYAGGVRSLDDLQLVQ 201
                 789****87.6799**************999887664333678999*********************************************************************************************97643 PP

>> TIGR00735  hisF: imidazoleglycerol phosphate synthase, cyclase subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.9   0.0   6.3e-13   2.6e-10      77     227 ..      59     212 ..      55     219 .. 0.87

  Alignments for each domain:
  == domain 1    score: 37.9 bits;  conditional E-value: 6.3e-13
   TIGR00735  77 ltvgGGiksiedvkkllraGadkvsint....aavkapelikeladrfGsqaivvaidakreaeneeakyevtikgGrestdldvvewakeveelGaGeilltsmdkdGtksGydlellkkvkeavkiPviasgGaGkaehl..eeaflkgkadaaL 227
                 l vgGGi+  ++++++l aGa  v + +    + v +   ++e+ + +Gs  +v+ + ++r+  +  + + v++   ++ t+l+v+e + +  ++   e l+ ++d +G++sG + el+ ++++   iPv  +gG+ + + l   + + +gk+d ++
  MMETSP1137-20121227|4046_1  59 LQVGGGIN-PSNAQEYLDAGASHVIVTSyvfrDGVLDDSRLAEMEQAVGSSRLVLDLSCRRRIST--GPFFVVTDRWQRFTELEVCEATLAELSKHCAEFLVHAVDVEGKQSGIEEELVVALAKWSPIPVTYAGGVRSLDDLqlVQKLSSGKVDVSV 212
                 689****7.57899**********998733335678889999********************976..8999999999************999999999*************************************9988765115677778887665 PP

>> TIGR01919  hisA-trpF: bifunctional HisA/TrpF protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.4   0.1   2.3e-09   9.5e-07     132     227 ..     120     215 ..      58     219 .. 0.74

  Alignments for each domain:
  == domain 1    score: 26.4 bits;  conditional E-value: 2.3e-09
   TIGR01919 132 ledgehrlrgrgwvsdg.gdlfevlerldsegcsrfvvtdvakdgtlsgpnvellaevaertdakvvasggisklddlraiaklaeegvdsaivgka 227
                 +  g + + +  w++    ++ e      s+ c+ f+v  v  +g  sg + el+  +a+ +  +v+ +gg+ +lddl+ ++kl+   vd + vg a
  MMETSP1137-20121227|4046_1 120 ISTGPFFVVTDRWQRFTeLEVCEATLAELSKHCAEFLVHAVDVEGKQSGIEEELVVALAKWSPIPVTYAGGVRSLDDLQLVQKLSSGKVDVS-VGSA 215
                 55666666666666533134444444445899****************************************************99888854.5655 PP

>> TIGR01163  rpe: ribulose-phosphate 3-epimerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.0   1.1e-06   0.00045     169     200 ..      59      90 ..      43     100 .. 0.90

  Alignments for each domain:
  == domain 1    score: 17.5 bits;  conditional E-value: 1.1e-06
   TIGR01163 169 ievDGGvkeeniaevaeaGadvlvagsaifka 200
                 ++v GG++ +n++e  +aGa  ++++s++f+ 
  MMETSP1137-20121227|4046_1  59 LQVGGGINPSNAQEYLDAGASHVIVTSYVFRD 90 
                 89****************************86 PP

>> TIGR01334  modD: modD protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.0   1.5e-06    0.0006     221     263 ..      42      85 ..      37      90 .. 0.84

  Alignments for each domain:
  == domain 1    score: 17.2 bits;  conditional E-value: 1.5e-06
   TIGR01334 221 qvkelaellklldknitlavaGGinkenvaeylelGid.lfits 263
                 q + +a   +l+++   l v GGin+ n +eyl++G++ +++ts
  MMETSP1137-20121227|4046_1  42 QGNSIAAKEALAAHPGGLQVGGGINPSNAQEYLDAGAShVIVTS 85 
                 6677888889999999********************96377787 PP

>> TIGR00734  hisAF_rel: hisA/hisF family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.0     0.035        15     187     217 ..      59      88 ..      44      93 .. 0.82
   2 !   12.6   0.0   4.8e-05      0.02     156     209 ..     154     207 ..     127     217 .. 0.79

  Alignments for each domain:
  == domain 1    score: 3.2 bits;  conditional E-value: 0.035
   TIGR00734 187 vilGGGikgvedlellkelGvsavLvatavh 217
                 + +GGGi++ +  e l   G s v+v+  v 
  MMETSP1137-20121227|4046_1  59 LQVGGGINPSNAQEYLD-AGASHVIVTSYVF 88 
                 569***********998.9**9999987665 PP

  == domain 2    score: 12.6 bits;  conditional E-value: 4.8e-05
   TIGR00734 156 dlivLdissvGtskgvnlellkkvlelserpvilGGGikgvedlellkelGvsa 209
                 +++v  ++  G ++g++ el+  + + s  pv   GG+++ +dl+l+++l    
  MMETSP1137-20121227|4046_1 154 EFLVHAVDVEGKQSGIEEELVVALAKWSPIPVTYAGGVRSLDDLQLVQKLSSGK 207
                 45666777789***********************************99885543 PP

>> TIGR01182  eda: 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   7.3e-06     0.003     155     196 ..      63     104 ..      45     110 .. 0.91

  Alignments for each domain:
  == domain 1    score: 14.8 bits;  conditional E-value: 7.3e-06
   TIGR01182 155 GGislanladylalpnvlvvggswlvpkdliaakdwdeitel 196
                 GGi+++n+++yl +++  v++ s ++   +++     e++++
  MMETSP1137-20121227|4046_1  63 GGINPSNAQEYLDAGASHVIVTSYVFRDGVLDDSRLAEMEQA 104
                 9**************************999999988888776 PP

>> TIGR01768  GGGP-family: geranylgeranylglyceryl phosphate synthase family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   0.1    0.0026       1.1     181     214 ..      58      90 ..      34      99 .. 0.76
   2 ?    4.1   0.0     0.015         6     159     194 ..     164     197 ..     137     213 .. 0.74

  Alignments for each domain:
  == domain 1    score: 6.6 bits;  conditional E-value: 0.0026
   TIGR01768 181 kLivGGGirsvEkArklaeagADvvvvGnvieed 214
                  L vGGGi+   +A++ ++agA  v+v   +  d
  MMETSP1137-20121227|4046_1  58 GLQVGGGINP-SNAQEYLDAGASHVIVTSYVFRD 90 
                 589*****86.57889999999866665554444 PP

  == domain 2    score: 4.1 bits;  conditional E-value: 0.015
   TIGR01768 159 sgapepvppelvaevkkvldkvkLivGGGirsvEkA 194
                 +     + +elv +  k  + +++++ GG+rs ++ 
  MMETSP1137-20121227|4046_1 164 GKQS-GIEEELVVALAK-WSPIPVTYAGGVRSLDDL 197
                 4444.489999999999.679***********8764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (246 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       124  (0.0302292); expected 82.0 (0.02)
Passed bias filter:                      116  (0.0282789); expected 82.0 (0.02)
Passed Vit filter:                        22  (0.00536324); expected 4.1 (0.001)
Passed Fwd filter:                        10  (0.00243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.27u 0.14s 00:00:00.41 Elapsed: 00:00:00.32
# Mc/sec: 1014.67
//
Query:       MMETSP1137-20121227|4047_1  [L=337]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (337 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        93  (0.0226719); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.13s 00:00:00.41 Elapsed: 00:00:00.40
# Mc/sec: 1112.01
//
Query:       MMETSP1137-20121227|4048_1  [L=45]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (45 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        45  (0.0109703); expected 82.0 (0.02)
Passed bias filter:                       41  (0.00999512); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.17s 00:00:00.27 Elapsed: 00:00:00.25
# Mc/sec: 237.58
//
Query:       MMETSP1137-20121227|4049_1  [L=131]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (131 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       100  (0.0243784); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.15s 00:00:00.31 Elapsed: 00:00:00.56
# Mc/sec: 303.34
//
Query:       MMETSP1137-20121227|4050_1  [L=223]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0046   14.3   7.2      0.016   12.5   0.1    2.2  2  TIGR00384 dhsB: succinate dehydrogenase and fumarate reductase iron-sulfur protein


Domain annotation for each model (and alignments):
>> TIGR00384  dhsB: succinate dehydrogenase and fumarate reductase iron-sulfur protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.5   0.1     4e-06     0.016     117     175 ..      23      81 ..      20     113 .. 0.84
   2 !    3.8   2.2    0.0017       7.1     135     171 ..     138     173 ..     112     181 .. 0.72

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 4e-06
   TIGR00384 117 keqkeeeeellqtpeeleklkelseCieCglCyssCpakklneeflGPaalakaarfll 175
                 ke ke+ + ++++p+ +++    +eC   ++  +sC +++ ++  +GP+ +a+a+r l+
  MMETSP1137-20121227|4050_1  23 KEFKETWQVTMMIPAAMSHAAVCRECFYLAVLNTSCGERHSKHSTIGPQGIAAASRILA 81 
                 6667777788899*******************************************876 PP

  == domain 2    score: 3.8 bits;  conditional E-value: 0.0017
   TIGR00384 135 klkelseCieCglCyssCpakklneeflGPaalakaa 171
                 +   +s+C++C +C+ +  a   ++   GP+ +  a+
  MMETSP1137-20121227|4050_1 138 RILAFSNCLQCLACICEIAAC-IVSLLGGPKEVVIAS 173
                 456799********9877665.445566777666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (223 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       215  (0.0524135); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.24u 0.16s 00:00:00.40 Elapsed: 00:00:00.42
# Mc/sec: 700.80
//
Query:       MMETSP1137-20121227|4051_1  [L=183]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (183 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.15s 00:00:00.32 Elapsed: 00:00:00.56
# Mc/sec: 431.32
//
Query:       MMETSP1137-20121227|4052_1  [L=262]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      5e-33  112.6   0.4    8.9e-33  111.8   0.3    1.3  1  TIGR01830 3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase
    2.5e-30  103.4   0.1    4.6e-30  102.5   0.1    1.4  1  TIGR01963 PHB_DH: 3-hydroxybutyrate dehydrogenase
    3.3e-29   99.8   0.3    4.2e-29   99.5   0.2    1.1  1  TIGR03206 benzo_BadH: 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase
    2.2e-28   97.3   0.3      3e-28   96.8   0.2    1.1  1  TIGR01832 kduD: 2-deoxy-D-gluconate 3-dehydrogenase
    1.3e-24   85.0   1.2    4.4e-24   83.3   0.8    1.7  1  TIGR01829 AcAcCoA_reduct: acetoacetyl-CoA reductase
      2e-24   84.2   0.3    3.9e-24   83.3   0.2    1.4  1  TIGR02415 23BDH: acetoin reductases
    1.5e-20   71.0   0.5    2.7e-20   70.1   0.4    1.3  1  TIGR02632 RhaD_aldol-ADH: rhamnulose-1-phosphate aldolase/alcohol dehydrogenase
    1.5e-19   68.3   0.3    3.5e-19   67.1   0.0    1.6  2  TIGR03971 SDR_subfam_1: oxidoreductase, SDR family
    4.9e-14   50.1   0.1    8.3e-14   49.3   0.1    1.3  1  TIGR01831 fabG_rel: putative 3-oxoacyl-(acyl-carrier-protein) reductase
    2.5e-09   34.5   0.0    3.8e-07   27.3   0.0    2.2  1  TIGR02685 pter_reduc_Leis: pteridine reductase
      1e-05   22.9   0.4      0.023   11.9   0.1    2.1  2  TIGR01500 sepiapter_red: sepiapterin reductase
    0.00019   18.9   0.0    0.00027   18.4   0.0    1.2  1  TIGR01289 LPOR: light-dependent protochlorophyllide reductase
    0.00044   17.1   0.3    0.00065   16.6   0.2    1.2  1  TIGR01035 hemA: glutamyl-tRNA reductase
     0.0014   15.7   0.2     0.0022   15.0   0.1    1.3  1  TIGR00507 aroE: shikimate 5-dehydrogenase
     0.0037   14.8   0.0      0.027   12.0   0.0    2.0  2  TIGR02084 leud: 3-isopropylmalate dehydratase, small subunit


Domain annotation for each model (and alignments):
>> TIGR01830  3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  111.8   0.3   3.3e-35   8.9e-33       2     234 ..      18     248 ..      17     252 .. 0.86

  Alignments for each domain:
  == domain 1    score: 111.8 bits;  conditional E-value: 3.3e-35
   TIGR01830   2 lvtGasrgiGkaiakklakegak.vviterskeekaeelaeelkeagvkaaavkldvsdeeevkelveeveeelgeidilvnnAGitrDklll.rmkeedwdevikvnLkgvfnvtkavlkkmikkr.sGriinissvvgllGnagqanYaasKaGligltkslakElasrnitvnavaPGfietdmteklsekvk.....kkileqiplkrlgkpeevaaavafLasdeasyitGqvlkv 234
                 +vtG++ g+Gk+ia++  ++ a+ ++it  +++ek+e++++elke+g+++++          + ++v+++++++g+++ lvn+A ++  k  l   + e+wd+ ++ nL+++f +t+ v+++m +   +G+i+ni+s  ++ G + +  Ya sK+G+  ltk +a+ l + ni+vn +  G+  t+  ++ ++k k     +++ ++ p++rl +p + aa+v++  sd++  itG+ l +
  MMETSP1137-20121227|4052_1  18 IVTGSTGGLGKEIARTCIEAKARgILIT-GRTTEKCERVVDELKETGGNTQIE---------FVSIVDKAVSAFGTVEGLVNSAALSFPKGDLeTTTLEHWDRLLRANLTSAFLLTQYVTRHMKETStKGSIVNIGSNQSYGGAPDKLAYAVSKGGMRVLTKNCAQQLRKANIRVNQLNMGWCLTEAEDREQKKEKgdnwaEQADKESPMGRLLRPIDTAATVIHFLSDASVMITGTELDI 248
                 8**************9877665516666.667788***********9876654.........44567889999*************97665551567799***********************987549******************************************************9998776554433222227888999****************************99887 PP

>> TIGR01963  PHB_DH: 3-hydroxybutyrate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.5   0.1   1.7e-32   4.6e-30       2     248 ..      15     248 ..      14     252 .. 0.88

  Alignments for each domain:
  == domain 1    score: 102.5 bits;  conditional E-value: 1.7e-32
   TIGR01963   2 kvalvtGaasGiglaiakelaaaGa.kvvvndleeeaaeaaakeleeaggevlalkadvtkeeeiadlieavaaefgsldiLvnnAGiqhva.pieefptekfekiiavnltsafhtiraalpimkkqg.wGriiniasvhglvasafKsaYvaaKHglvGltKvlAlEvAetgitanaicPgyvrtpLvekqiadqaktrgiseeqvvkevllkkqptkrfvtveevaelalflasdaaaqitGqalsl 248
                 k+++vtG+++G+g++ia++  +a a  +++++ ++e++e++  el+e+gg+++   +         +++++++++fg+++ Lvn A + + +  +e    e++++++  nltsaf +++ + ++mk++   G i+ni+s +++ + + K aY  +K g+  ltK  A    +++i++n ++ g+  t        +q k++g +      e   k++p +r++ + + a+++++  sda+  itG+ l +
  MMETSP1137-20121227|4052_1  15 KAIIVTGSTGGLGKEIARTCIEAKArGILITGRTTEKCERVVDELKETGGNTQIEFV---------SIVDKAVSAFGTVEGLVNSAALSFPKgDLETTTLEHWDRLLRANLTSAFLLTQYVTRHMKETStKGSIVNIGSNQSYGGAPDKLAYAVSKGGMRVLTKNCAQQLRKANIRVNQLNMGWCLTEAE---DREQKKEKGDN----WAEQADKESPMGRLLRPIDTAATVIHFLSDASVMITGTELDI 248
                 899***************9887765169*********************99765444.........466778999**************97647********************************975279****************************************************999643...34555555533....333344789*****************************9987 PP

>> TIGR03206  benzo_BadH: 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.5   0.2   1.5e-31   4.2e-29       2     246 ..      13     250 ..      12     254 .. 0.91

  Alignments for each domain:
  == domain 1    score: 99.5 bits;  conditional E-value: 1.5e-31
   TIGR03206   2 kdkvaivtgggggiggaicrrfaeegak.vavldlnaeaaekvaaairekggkaeavavditdrasvdaavaaaeealgpvdvlvnnagwdvlkp.flktekaewerliainltgalymhhavlkgmver.kagrivniasdaarvgssgeavyaackgglvafsktlarelarhgitvnvvcpgptdtalledvkseaekpeklieaftraiplgrlgkpddlagailflasddaafitgqvlsvsg 246
                  +k++ivtg +gg+g  i r   e  a+ + +   ++e +e+v ++++e+gg+++   v i d      av+    a+g v+ lvn a     k  +  t   +w+rl+  nlt a+ +   v + m e   +g ivni s+ + +g+  +  ya+ kgg+  ++k  a++l + +i vn +  g   t   ed  ++ ek++   e   +  p+grl +p d a +++ + sd + +itg  l +s 
  MMETSP1137-20121227|4052_1  13 TGKAIIVTGSTGGLGKEIARTCIEAKARgILITGRTTEKCERVVDELKETGGNTQIEFVSIVD-----KAVS----AFGTVEGLVNSAALSFPKGdLETTTLEHWDRLLRANLTSAFLLTQYVTRHMKETsTKGSIVNIGSNQSYGGAPDKLAYAVSKGGMRVLTKNCAQQLRKANIRVNQLNMGWCLTE-AEDREQKKEKGDNWAEQADKESPMGRLLRPIDTAATVIHFLSDASVMITGTELDISP 250
                 6899**************9998887776377788999****************9988887755.....5666....5899999******999876155667789************************97368****************************************************99887.5999***********************************************999985 PP

>> TIGR01832  kduD: 2-deoxy-D-gluconate 3-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.8   0.2   1.1e-30     3e-28       2     240 ..      11     247 ..      10     251 .. 0.86

  Alignments for each domain:
  == domain 1    score: 96.8 bits;  conditional E-value: 1.1e-30
   TIGR01832   2 sleGkvalvtGantGlGqgiavglaeaGadivgvgiselsetqekvealGrkflslkadladeeaakalvdeaveeagkidilvnnaGiir.redavefsekdwddvlnvnlkavfllsqavakkllkqGrkgkiiniasllsfqGGirvpsytasksavaGltkllanewakkginvnaiaPGyletnntealrade...krnaaileriPagrwGepedlagaavflassasdyvnGaila 240
                 +l Gk ++vtG+  GlG+ ia +  ea a  + ++ + +++ +  v++l ++  + +++++      ++vd+av ++g ++ lvn a +   + d +  + + wd +l  nl + fll+q v++++ ++ +kg i+ni s  s+ G     +y+ sk ++  ltk  a+++ k +i+vn +  G+  t+  ++ +  e   + +++  +  P gr  +p d a +++ + s+as  ++G+ l 
  MMETSP1137-20121227|4052_1  11 DLTGKAIIVTGSTGGLGKEIARTCIEAKARGILITGRTTEKCERVVDELKETGGNTQIEFV------SIVDKAVSAFGTVEGLVNSAALSFpKGDLETTTLEHWDRLLRANLTSAFLLTQYVTRHMKETSTKGSIVNIGSNQSYGGAPDKLAYAVSKGGMRVLTKNCAQQLRKANIRVNQLNMGWCLTEAEDREQKKEkgdNWAEQADKESPMGRLLRPIDTAATVIHFLSDASVMITGTELD 247
                 699*********************9999987777766666666666666666655555554......589******************965166777778899**********************************************************************************99986554433330114456777889***************************99875 PP

>> TIGR01829  AcAcCoA_reduct: acetoacetyl-CoA reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.3   0.8   1.6e-26   4.4e-24       3     236 ..      17     248 ..      15     252 .. 0.83

  Alignments for each domain:
  == domain 1    score: 83.3 bits;  conditional E-value: 1.6e-26
   TIGR01829   3 alvtGglgGiGtaickrlakdGykvvanvapneerakewlqekevegfdvavvkadvssfeeakaavakveaelGpvdvlvnnaGitrda.vfkkmtkeqWeevidtnlnsvfnvtrpviegmlerg.fGriinissvnGlkGqfGqanysaakaGliGftkalaqegakkgvtvnviaPGyiatemvkavr.....edvlkkivaqiPvkrlgkpeeiaaavaflaseeagyvtGatlsv 236
                  +vtG++gG+G++i++  +++  + +  +   +e+ +++ +e + +g +         +  e  + v+k  ++ G+v+ lvn+a +   +  ++  t e+W+ ++++nl+s f +t+ v+  m+e +  G i+ni s     G   +  y+ +k G+  +tk  aq+  k ++ vn +  G+  te     +     ++  ++  ++ P++rl +p + aa+v ++ s+++  +tG++l++
  MMETSP1137-20121227|4052_1  17 IIVTGSTGGLGKEIARTCIEAKARGILITGRTTEKCERVVDELKETGGN---------TQIEFVSIVDKAVSAFGTVEGLVNSAALSFPKgDLETTTLEHWDRLLRANLTSAFLLTQYVTRHMKETStKGSIVNIGSNQSYGGAPDKLAYAVSKGGMRVLTKNCAQQLRKANIRVNQLNMGWCLTEAEDREQkkekgDNWAEQADKESPMGRLLRPIDTAATVIHFLSDASVMITGTELDI 248
                 589************9998887775554444444445555544444333.........23345678999999**************9755279999****************************98626******************************************************9987543321111145667788999*******************************98 PP

>> TIGR02415  23BDH: acetoin reductases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.3   0.2   1.4e-26   3.9e-24       2     244 ..      16     245 ..      15     250 .. 0.88

  Alignments for each domain:
  == domain 1    score: 83.3 bits;  conditional E-value: 1.4e-26
   TIGR02415   2 valvtGaaqGiGkaiaerLakd.GfavavadlneetaketakelkekgtkavavkldvsdkseveeaveqaveklGeldvlvnnaGvalvt.pileiteeeleklynvnvkgvlfGiqaaaekfkklkhkGkiinaasiagvegspelsaysstkfavrgltqtaakeLakkgitvnayaPGivktemreeideklaelagkeigekle.efsseiklGresePedvaelvsflasedsdyitGqs 244
                   +vtG++ G+Gk+ia+  ++     + ++    e+  +++ elke+g++            e+ ++v++av+ +G+++ lvn a +++ +  +++ t e+ ++l   n+++ +   q  ++++k++ +kG i+n  s  +  g p + ay+ +k  +r lt+  a++L k  i vn  + G   te  ++   ++    +ke g++++ +  +e  +Gr  +P d a+ v ++ s++s  itG  
  MMETSP1137-20121227|4052_1  16 AIIVTGSTGGLGKEIARTCIEAkARGILITGRTTEKCERVVDELKETGGNTQ---------IEFVSIVDKAVSAFGTVEGLVNSAALSFPKgDLETTTLEHWDRLLRANLTSAFLLTQYVTRHMKETSTKGSIVNIGSNQSYGGAPDKLAYAVSKGGMRVLTKNCAQQLRKANIRVNQLNMGWCLTEAEDR---EQ----KKEKGDNWAeQADKESPMGRLLRPIDTAATVIHFLSDASVMITGTE 245
                 679*************99887515679999999***************9864.........478899********************987626899999***********************************************************************************999987664...33....334444443034456789**************************76 PP

>> TIGR02632  RhaD_aldol-ADH: rhamnulose-1-phosphate aldolase/alcohol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.1   0.4   9.9e-23   2.7e-20     411     666 ..      11     248 ..       4     254 .. 0.87

  Alignments for each domain:
  == domain 1    score: 70.1 bits;  conditional E-value: 9.9e-23
   TIGR02632 411 elarrvalvtGgasGiGrevarrlvdeGah.vvladldaeaaeavaaelvdkfGadkavalkldvtdeeavkaafaevalayGGvdivvnnaGiavsk.pleeteleeWdlnldilatGyflvareaarllrkqglggnlvfiasknavvakknalaysaakaaeahlvrllaielaelgirvntvaPdavlrGsgifagewrekraaaygieadkleefykkrsllkrevlpediaeavfllasdklekttGliitv 666
                 +l+++ ++vtG+++G+G+e+ar  ++  a  ++++   +e+ e v +el++  G+ +               + +++++ a+G v+ +vn+a ++  k +le t+le+Wd+ l  + t  fl+++   r +++ ++ g++v i+s  +    ++ lay+ +k     l +  a +l ++ irvn ++      G  + ++e re++      + d+ +e   k s ++r + p d a +v+ ++sd +   tG+ + +
  MMETSP1137-20121227|4052_1  11 DLTGKAIIVTGSTGGLGKEIARTCIEAKARgILITGRTTEKCERVVDELKETGGNTQIEF-----------VSIVDKAVSAFGTVEGLVNSAALSFPKgDLETTTLEHWDRLLRANLTSAFLLTQYVTRHMKETSTKGSIVNIGSNQSYGGAPDKLAYAVSKGGMRVLTKNCAQQLRKANIRVNQLNM-----GWCLTEAEDREQKKE----KGDNWAEQADKESPMGRLLRPIDTAATVIHFLSDASVMITGTELDI 248
                 7899*******************999887638888999***********97766644332...........345678999**************98763788888*******************************************************************************9985.....555566666666544....4688889999999999999999999999999999999999988765 PP

>> TIGR03971  SDR_subfam_1: oxidoreductase, SDR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0         1   2.9e+02       1      20 [.      12      31 ..      12      45 .. 0.73
   2 !   67.1   0.0   1.3e-21   3.5e-19      81     260 ..      71     248 ..      31     253 .. 0.87

  Alignments for each domain:
  == domain 1    score: -1.5 bits;  conditional E-value: 1
   TIGR03971  1 leGkvalitGaarGqGraea 20
                l Gk  ++tG++ G G+  a
  MMETSP1137-20121227|4052_1 12 LTGKAIIVTGSTGGLGKEIA 31
                56888888888888877655 PP

  == domain 2    score: 67.1 bits;  conditional E-value: 1.3e-21
   TIGR03971  81 ravveegveefGrldvvvanaGvl.sygrafelseeqWdtvldvnlkGvWktvkavvPalierknGGsiiivssvaglkalpglahyaaakhGlvgltktlanelaeygirvnsihPtsvdtamiepeamrelfakreeaaraflpalpvsglvepedvadvvawlasdesryitGaqlav 260
                  ++v+++v+ fG ++ +v+ a +    g +   + e+Wd +l  nl+ ++   + v  ++ e    Gsi+ ++s  +  + p +  ya++k G+  ltk  a++l + +irvn ++     t+  + e   +   k ++ a++  ++ p+  l+ p d a+ v ++ sd s +itG++l +
  MMETSP1137-20121227|4052_1  71 VSIVDKAVSAFGTVEGLVNSAALSfPKGDLETTTLEHWDRLLRANLTSAFLLTQYVTRHMKETSTKGSIVNIGSNQSYGGAPDKLAYAVSKGGMRVLTKNCAQQLRKANIRVNQLNMGWCLTEAEDRE---QKKEKGDNWAEQADKESPMGRLLRPIDTAATVIHFLSDASVMITGTELDI 248
                 4689**************99987414466666788********************************************************************************9888777766655...555566777777778899*99**********99999**********9976 PP

>> TIGR01831  fabG_rel: putative 3-oxoacyl-(acyl-carrier-protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.3   0.1     3e-16   8.3e-14       1     230 [.      17     244 ..      17     253 .. 0.84

  Alignments for each domain:
  == domain 1    score: 49.3 bits;  conditional E-value: 3e-16
   TIGR01831   1 vlvtgasrgigraialklaadgfeiavhyrsdradaeesvaairaqggnarllkfdvadrvavrevleadiaehgayygvvlnagiar.daafpalseedwdavietnldgfynvihplvmpmirarkggriitlasvsgvmgnrgqvnysaakagligatkalavelakrkitvnciapglidtemvaevekd......lkealklvpmkrvgkaeevaalaaflmsddaayvtrq 230
                 ++vtg++ g+g+ ia     +     +   + + + e +v++++ +ggn+++            +++++ +++ g+  g+v +a ++     + + + e+wd ++++nl + + + + ++  m ++   g i+ + s     g   ++ y+ +k g+   tk  a +l k +i vn +  g   te  + ++k+       ++a k  pm r+ ++ + aa + +++sd +  +t  
  MMETSP1137-20121227|4052_1  17 IIVTGSTGGLGKEIARTCIEAKARGILITGRTTEKCERVVDELKETGGNTQIEF---------VSIVDKAVSAFGTVEGLVNSAALSFpKGDLETTTLEHWDRLLRANLTSAFLLTQYVTRHMKETSTKGSIVNIGSNQSYGGAPDKLAYAVSKGGMRVLTKNCAQQLRKANIRVNQLNMGWCLTEAEDREQKKekgdnwAEQADKESPMGRLLRPIDTAATVIHFLSDASVMITGT 244
                 58*************886655554445556677889*************98643.........356778899*************9872456889999*********************************************************************************99887776554443211122234566889**********************9999965 PP

>> TIGR02685  pter_reduc_Leis: pteridine reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.3   0.0   1.4e-09   3.8e-07      72     260 ..      71     250 ..      14     256 .. 0.72

  Alignments for each domain:
  == domain 1    score: 27.3 bits;  conditional E-value: 1.4e-09
   TIGR02685  72 eeiidacfrafGrcdvlvnnasafyptpllrgdaeegaaekkslevqvaelfGsnaiaplllikafaqrqkgtraelrssnlsivnlvdamtdqpllgfslytmakealeGltrsaalelaslqirvngvapGlsllpdampeevk...eeyr....rkvplgqreasaeqiadvviflvskkakyitGtiikvdG 260
                   i+d +  afG  + lvn a+  +p     gd e     + +le     l+ +n  + +ll++  ++ +     + +s++ sivn+         +    y+++k  +  lt+  a +l   +irvn +  G  l   +  e++k   +++     +  p+g+     +  a v+ fl s+ +  itGt + +  
  MMETSP1137-20121227|4052_1  71 VSIVDKAVSAFGTVEGLVNSAALSFPK----GDLE-----TTTLEH-WDRLLRANLTSAFLLTQYVTRHM-----KETSTKGSIVNIGSNQSYGGAPDKLAYAVSKGGMRVLTKNCAQQLRKANIRVNQLNMGWCLTEAEDREQKKekgDNWAeqadKESPMGRLLRPIDTAATVIHFL-SDASVMITGTELDISP 250
                 358999999999999999999999984....4433.....355554.56799999999999988777766.....5578899*******99999999*************************************998766555444112456422225679999888888777777776.777889****988765 PP

>> TIGR01500  sepiapter_red: sepiapterin reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.9   0.1   8.4e-05     0.023       3      62 ..      17      73 ..      15     101 .. 0.79
   2 !    9.6   0.0   0.00044      0.12     115     242 ..     109     236 ..      89     249 .. 0.76

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 8.4e-05
   TIGR01500  3 llvtGasrGfGrelaqelakrlkaegsvlvLlaRndeaLkeskaeieaevsalsvdlvsl 62
                ++vtG+  G+G+e+a+  ++  ka+g+   + +R  e   +  +e++ +  + +++ vs+
  MMETSP1137-20121227|4052_1 17 IIVTGSTGGLGKEIARTCIE-AKARGIL--ITGRTTEKCERVVDELKETGGNTQIEFVSI 73
                79**************9888.7777765..568999988888888887777777766664 PP

  == domain 2    score: 9.6 bits;  conditional E-value: 0.00044
   TIGR01500 115 qkyydsnvtslvvltsellkklkelqglektvvnlssLcaikpfkswalYCaskaaRdmffqvLaleek.edvkvLnYapGvlDtdmqsqvreeasdpdvkalyrelkedgklvdpkrsaekllkllea 242
                 ++   +n+ts+  lt  + + +ke  + +  +vn+ s  +    +    Y  sk    ++ +  a   +  +++v    +G   t+ + + +++ +  +  +   +    g+l+ p  +a  +++ l  
  MMETSP1137-20121227|4052_1 109 DRLLRANLTSAFLLTQYVTRHMKE-TSTKGSIVNIGSNQSYGGAPDKLAYAVSKGGMRVLTKNCAQQLRkANIRVNQLNMGWCLTEAEDREQKKEKGDNWAEQADKESPMGRLLRPIDTAATVIHFLSD 236
                 566789*****************5.588899******99999999999999999988888888888877799999888888888887776665555434444445555568899998888888887754 PP

>> TIGR01289  LPOR: light-dependent protochlorophyllide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.0   9.9e-07   0.00027       4     135 ..      15     137 ..      12     159 .. 0.87

  Alignments for each domain:
  == domain 1    score: 18.4 bits;  conditional E-value: 9.9e-07
   TIGR01289   4 ptviitgassglglaaakalvekgkwhvvmacrdlekaekaakslglpkdsytilkldlasldsvrkfveqfresgrsldalvcnaavylpllkeplfsadgyelsvatnhlghfllsnllledlkksdekd 135
                 +++i+tg++ glg + a++ +e     ++++ r  ek+e++ ++l  + ++  i       +  v k v+ f      ++ lv  aa+ +p  +  + + + ++  + +n    fll++ +   +k++++k 
  MMETSP1137-20121227|4052_1  15 KAIIVTGSTGGLGKEIARTCIEAKARGILITGRTTEKCERVVDELKETGGNTQI-----EFVSIVDKAVSAFGT----VEGLVNSAALSFPKGDLETTTLEHWDRLLRANLTSAFLLTQYVTRHMKETSTKG 137
                 5799******************99999*****************9877777544.....345568899999975....679****************************************99999887654 PP

>> TIGR01035  hemA: glutamyl-tRNA reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.2   2.4e-06   0.00065     172     231 ..       6      66 ..       3      95 .. 0.81

  Alignments for each domain:
  == domain 1    score: 16.6 bits;  conditional E-value: 2.4e-06
   TIGR01035 172 ekilgsLkgkkvlliG.aGemaeLvakhLkekgvkkvlilnRtyekaekLakeleeeavkl 231
                  k l +L gk +++ G  G +++ +a+   e+++  +li++Rt ek e+ ++el+e+  + 
  MMETSP1137-20121227|4052_1   6 SKLLADLTGKAIIVTGsTGGLGKEIARTCIEAKARGILITGRTTEKCERVVDELKETGGNT 66 
                 688999**********559***********************************9975444 PP

>> TIGR00507  aroE: shikimate 5-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.1   8.1e-06    0.0022     111     176 ..       9      75 ..       3      96 .. 0.83

  Alignments for each domain:
  == domain 1    score: 15.0 bits;  conditional E-value: 8.1e-06
   TIGR00507 111 lsklksekrvliiGA.GGaakavaleLlka.dkeviiaNRtvekaeelaerlqelgeilalsleevel 176
                 l  l  +k +++ G  GG +k +a +  +a    ++i+ Rt+ek e+++++l+e+g  ++++  ++  
  MMETSP1137-20121227|4052_1   9 LADLT-GKAIIVTGStGGLGKEIARTCIEAkARGILITGRTTEKCERVVDELKETGGNTQIEFVSIVD 75 
                 45566.8899999954999*****9988885788********************99888887666555 PP

>> TIGR02084  leud: 3-isopropylmalate dehydratase, small subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.0      0.39   1.1e+02      48      75 ..      15      42 ..       4      74 .. 0.79
   2 !   12.0   0.0   9.8e-05     0.027      38     114 ..     127     207 ..     116     215 .. 0.80

  Alignments for each domain:
  == domain 1    score: 0.3 bits;  conditional E-value: 0.39
   TIGR02084 48 gdilvagknfgcgssrehapiaikasgi 75
                  i+v+g   g g     + i  ka gi
  MMETSP1137-20121227|4052_1 15 KAIIVTGSTGGLGKEIARTCIEAKARGI 42
                5688889888888776666666677776 PP

  == domain 2    score: 12.0 bits;  conditional E-value: 9.8e-05
   TIGR02084  38 dkefkkkvkegdilvagknfgcgssrehapiaikasgiscvi...aksfarifyr.nainiglpiveseeavdeleegdev 114
                  +++k+   +g+i+  g n   g + ++   a+   g+ ++    a+ + +   r n +n+g  + e+e+  ++ e+gd+ 
  MMETSP1137-20121227|4052_1 127 TRHMKETSTKGSIVNIGSNQSYGGAPDKLAYAVSKGGMRVLTkncAQQLRKANIRvNQLNMGWCLTEAEDREQKKEKGDNW 207
                 456778899****************************9876411133444444445899********************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (262 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       254  (0.061921); expected 82.0 (0.02)
Passed bias filter:                      221  (0.0538762); expected 82.0 (0.02)
Passed Vit filter:                        38  (0.00926377); expected 4.1 (0.001)
Passed Fwd filter:                        15  (0.00365675); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.46u 0.14s 00:00:00.60 Elapsed: 00:00:00.74
# Mc/sec: 467.31
//
Query:       MMETSP1137-20121227|4053_1  [L=263]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        8.4    1.7  31.9        9.3    1.5  22.1    1.0  1  TIGR00927 2A1904: K+-dependent Na+/Ca+ exchanger


Domain annotation for each model (and alignments):
>> TIGR00927  2A1904: K+-dependent Na+/Ca+ exchanger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5  22.1    0.0023       9.3     746     911 ..      90     255 ..      56     263 .] 0.57

  Alignments for each domain:
  == domain 1    score: 1.5 bits;  conditional E-value: 0.0023
   TIGR00927 746 gdvaeaeakgertgeeaeaeteaegekdeesggeaeqegeseekaeeeseGeieaerkgedegegeieakeaevkGeeeee.eveaeeeteaeGdedegeieaeeeGeekededegeieakeevevegdedeteieaeeeaevkede...deGeieaeedgevkGdegee 911
                   +a  + ++   g  a+a++ea +  +ee+   +e+++e  e  e+e+e e  aer++e+e+e e e +++ ++ +  ++ + ++ e++++e +e e   + +e  +e ++e e e  +     +++d+++ ++++ +++++++d    d+ e + +++ e +G  + e
  MMETSP1137-20121227|4053_1  90 SRRAGGDLRAVAAGMLARAPAEAAAGASEER--PQERQQECGEGHEAEQEQEPWAERQQEQEQEREFEREQGSQREQIAQQrQSQEREQGQEEAAEAEP-LQQQERQQERQQERELERPG-PLQRKRADKSKENYKSRRSSHGQKDRasvDKREKRVGGERESEGRREVE 255
                 4444444444555555555544444444444..444444555556677777889999999999999999997666554443244555555666644443.34455555556665555555.4555667776677776666665554311144455555555555555433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (263 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       337  (0.082155); expected 82.0 (0.02)
Passed bias filter:                      115  (0.0280351); expected 82.0 (0.02)
Passed Vit filter:                        35  (0.00853242); expected 4.1 (0.001)
Passed Fwd filter:                         9  (0.00219405); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.19s 00:00:00.60 Elapsed: 00:00:00.46
# Mc/sec: 754.63
//
Query:       MMETSP1137-20121227|4054_1  [L=139]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (139 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        37  (0.00901999); expected 82.0 (0.02)
Passed bias filter:                       37  (0.00901999); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.15s 00:00:00.32 Elapsed: 00:00:00.35
# Mc/sec: 524.19
//
Query:       MMETSP1137-20121227|4055_1  [L=239]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (239 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       146  (0.0355924); expected 82.0 (0.02)
Passed bias filter:                      101  (0.0246221); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.15s 00:00:00.37 Elapsed: 00:00:00.80
# Mc/sec: 394.32
//
Query:       MMETSP1137-20121227|4056_1  [L=526]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (526 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        91  (0.0221843); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.11s 00:00:00.44 Elapsed: 00:00:00.44
# Mc/sec: 1577.87
//
Query:       MMETSP1137-20121227|4057_1  [L=423]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (423 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        84  (0.0204778); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.18s 00:00:00.48 Elapsed: 00:00:00.65
# Mc/sec: 858.94
//
Query:       MMETSP1137-20121227|4058_1  [L=118]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (118 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        66  (0.0160897); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.15s 00:00:00.32 Elapsed: 00:00:00.47
# Mc/sec: 331.38
//
Query:       MMETSP1137-20121227|4059_1  [L=333]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (333 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       176  (0.0429059); expected 82.0 (0.02)
Passed bias filter:                      116  (0.0282789); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.13s 00:00:00.40 Elapsed: 00:00:00.45
# Mc/sec: 976.72
//
Query:       MMETSP1137-20121227|4060_1  [L=146]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.2e-37  125.7   0.2      3e-37  125.3   0.1    1.1  1  TIGR00283 arch_pth2: peptidyl-tRNA hydrolase


Domain annotation for each model (and alignments):
>> TIGR00283  arch_pth2: peptidyl-tRNA hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  125.3   0.1   7.2e-41     3e-37       1     108 [.      34     142 ..      34     145 .. 0.96

  Alignments for each domain:
  == domain 1    score: 125.3 bits;  conditional E-value: 7.2e-41
   TIGR00283   1 lkqvivvrddlklgkGklaaqaahaaisafkkaatkneslvrkWle.eGqkkvvlkvkskeelleiyakakslGlsaalvrdaGrtqiaaGtitalgiGPdedekidki 108
                 lk+v+vvr dlk+gkGk+aaq++haa+++f +a++  ++  + W+e +G +kvv+k++s++ell + a a+ +Gl+ +l+ daGrtqiaaG+ t+ g+GP+ ++ +  i
  MMETSP1137-20121227|4060_1  34 LKMVLVVRTDLKMGKGKIAAQCCHAAVHCFEEAQQVAPHRLDLWEEsNGTAKVVVKCDSEDELLRVXAGARAAGLVHSLISDAGRTQIAAGSRTVCGVGPATEQELASI 142
                 79******************************************8537******************************************************9988765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (146 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        73  (0.0177962); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.17u 0.14s 00:00:00.31 Elapsed: 00:00:00.39
# Mc/sec: 494.11
//
Query:       MMETSP1137-20121227|4061_1  [L=166]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (166 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       134  (0.032667); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.17s 00:00:00.36 Elapsed: 00:00:00.52
# Mc/sec: 421.35
//
Query:       MMETSP1137-20121227|4062_1  [L=885]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (885 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       718  (0.175037); expected 82.0 (0.02)
Passed bias filter:                      205  (0.0499756); expected 82.0 (0.02)
Passed Vit filter:                        42  (0.0102389); expected 4.1 (0.001)
Passed Fwd filter:                        16  (0.00390054); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 1.03u 0.20s 00:00:01.23 Elapsed: 00:00:00.97
# Mc/sec: 1204.23
//
Query:       MMETSP1137-20121227|4063_1  [L=398]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (398 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       135  (0.0329108); expected 82.0 (0.02)
Passed bias filter:                       96  (0.0234032); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.15s 00:00:00.46 Elapsed: 00:00:00.42
# Mc/sec: 1250.75
//
Query:       MMETSP1137-20121227|4064_1  [L=316]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (316 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       126  (0.0307167); expected 82.0 (0.02)
Passed bias filter:                      109  (0.0265724); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.17s 00:00:00.46 Elapsed: 00:00:00.33
# Mc/sec: 1263.90
//
Query:       MMETSP1137-20121227|4065_1  [L=236]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.9e-35  118.3   0.3    7.6e-35  118.0   0.2    1.1  1  TIGR00231 small_GTP: small GTP-binding protein domain
    6.5e-07   26.5   0.4    2.6e-06   24.5   0.3    1.7  1  TIGR03594 GTPase_EngA: ribosome-associated GTPase EngA
    2.7e-05   21.2   0.4    6.3e-05   20.0   0.3    1.5  1  TIGR00450 mnmE_trmE_thdF: tRNA modification GTPase TrmE
    3.1e-05   20.9   0.3    0.00011   19.1   0.2    1.7  1  TIGR03156 GTP_HflX: GTP-binding protein HflX
    9.7e-05   19.5   0.5      0.042   10.8   0.1    2.1  2  TIGR03597 GTPase_YqeH: ribosome biogenesis GTPase YqeH
     0.0003   18.2   0.1       0.19    9.0   0.0    2.2  2  TIGR00157 TIGR00157: ribosome small subunit-dependent GTPase A


Domain annotation for each model (and alignments):
>> TIGR00231  small_GTP: small GTP-binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  118.0   0.2   1.1e-37   7.6e-35       3     162 ..      25     182 ..      23     184 .. 0.96

  Alignments for each domain:
  == domain 1    score: 118.0 bits;  conditional E-value: 1.1e-37
   TIGR00231   3 eikivivGhvdvGKstLlnsllknkisiteskpgvtrdyvteqieedGktykvnllDTaGqedfdairrlyvreverslevvdivilvldveeglekqtkeiiheakkkgvpiilvvnKiDlkd..dlktkvkslfaklnaepiielsaetgknidklfklv 162
                  +k+v++G+++vGKs+Ll ++++++   ++  ++++ d+  + i+ +Gkt+k++++DTaGqe+f+ i++ y+r + +++ v+d +   +++e ++  +  ei ++a  ++v  +lv+nK Dl +  +++t+ +++fa++   p+ e+sa++ +n++++f ++
  MMETSP1137-20121227|4065_1  25 VFKLVLIGDSGVGKSCLLLRFADDT-YTESHISTIGVDFKIRTIQLEGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDTTDS-ETFEHVK-TWLHEIDRYAS-ENVNKLLVGNKSDLSSkrQVETEAAKEFANSVSIPFLETSAKNATNVEDAFMTM 182
                 689**********************.5555559******************************************************.******9.***********.*************************************************99765 PP

>> TIGR03594  GTPase_EngA: ribosome-associated GTPase EngA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.5   0.3   3.8e-09   2.6e-06     173     362 ..      23     203 ..       8     220 .. 0.75

  Alignments for each domain:
  == domain 1    score: 24.5 bits;  conditional E-value: 3.8e-09
   TIGR03594 173 eepikiaiiGrpNvGKStLvNallgeervivsdiaGtTrDsidievevkgkk..ylliDTAGirrkkkveekveklsvlrtlkaieradvvllvlDat..egiseqDlki..aglileegkalvivvNKwDlvkdekeleelkkeleeklkflkfapivfiSAltgkgveklle.aikevyeslskristsklnrvl 362
                 +  +k+ +iG   vGKS L+ ++ ++     s i+ +  D    +++ +gk+  +++ DTAG  r + ++      s        + a+ +++v D+t  e++++  + +  ++  ++e+   ++v NK Dl     +++++++e  ++++    +p++ +SA++ ++ve+ +  ++ e+++++ +  sts+ n+ +
  MMETSP1137-20121227|4065_1  23 DYVFKLVLIGDSGVGKSCLLLRFADD-TYTESHISTIGVDFKIRTIQLEGKTikLQIWDTAGQERFRTIT-----SS------YYRGAHGIIVVYDTTdsETFEHVKTWLheIDRYASENVNKLLVGNKSDLS----SKRQVETEAAKEFANSVSIPFLETSAKNATNVEDAFMtMAGEIKKRMASTPSTSEGNKKI 203
                 45799***************999865.5778888888888766666666665116789****99998886.....33......3455666677777763344555554441134455566677899*******....77889999999999999***************9876515569999999999999888765 PP

>> TIGR00450  mnmE_trmE_thdF: tRNA modification GTPase TrmE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   0.3   9.3e-08   6.3e-05     209     357 ..      25     177 ..      17     206 .. 0.68

  Alignments for each domain:
  == domain 1    score: 20.0 bits;  conditional E-value: 9.3e-08
   TIGR00450 209 glklaivGktNvGKSSLlNallkkdraiVsdikGttRDvvEedleleGilv..kllDtAGiReaadkvEklGiekslkaikeadlvlyvlDaskpltkdd.....eliitlkkkkkdlllvlNKiDLa........eleilkselkltvsllsakqlkikelvd 357
                  +kl+++G+  vGKS Ll  +  +d    s+i     D     ++leG ++  ++ DtAG            i  + +  + a  ++ v D + ++t ++     + i++   ++ + llv NK DL           +++ +++ ++   l++  ++  +++d
  MMETSP1137-20121227|4065_1  25 VFKLVLIGDSGVGKSCLLLRFA-DDTYTESHISTIGVDFKIRTIQLEGKTIklQIWDTAGQERFR------TI--TSSYYRGAHGIIVVYDTTDSETFEHvktwlHEIDRYASENVNKLLVGNKSDLSskrqveteAAKEFANSVSIPF--LETSAKNATNVED 177
                 59****************8876.577778999999999999999999966511689****53322......23..4456778888888889888887665432234577778888999*********9776443221222222233333..3444444444444 PP

>> TIGR03156  GTP_HflX: GTP-binding protein HflX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.2   1.6e-07   0.00011     187     341 ..      23     176 ..      10     186 .. 0.79

  Alignments for each domain:
  == domain 1    score: 19.1 bits;  conditional E-value: 1.6e-07
   TIGR03156 187 sevptvalvGYTNaGKstllnaltkaevlaedklFATLdpttrrlklpeee.evlltDTVGFirkLPheLveaFka.TLeevaeadlllhvvDasdeeaeeqieaveevLeelgaeeipvllvlNkidkleeeeleeleekk.ee.....avlvsAkkgegle 341
                 + v+++ l+G    GKs ll ++++++  +        d ++r+++l+ ++ ++ + DT G          e F++ T    + a  ++ v D++d+e+ e++++  + ++    e++++llv Nk d+ +++++e++++k+ ++      +  sAk+ +++e
  MMETSP1137-20121227|4065_1  23 DYVFKLVLIGDSGVGKSCLLLRFADDTYTESHISTIGVDFKIRTIQLEGKTiKLQIWDTAGQ---------ERFRTiTSSYYRGAHGIIVVYDTTDSETFEHVKTWLHEIDRYASENVNKLLVGNKSDLSSKRQVETEAAKEfANsvsipFLETSAKNATNVE 176
                 5688999***************9988877777777889*********9885488999****4.........5566535556788999**********999999998888888899999*************99999988877544122223345666666665 PP

>> TIGR03597  GTPase_YqeH: ribosome biogenesis GTPase YqeH
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.9   0.0   0.00024      0.17     157     222 ..      27      91 ..       4     115 .. 0.72
   2 !   10.8   0.1   6.1e-05     0.042      53     120 ..      86     159 ..      82     215 .. 0.68

  Alignments for each domain:
  == domain 1    score: 8.9 bits;  conditional E-value: 0.00024
   TIGR03597 157 dvyvvGvtNVGKSsliNkllklnkgkkkvittS.kfpgTTldlieipldkesvllDtpGiineeqia 222
                 + +++G + VGKS l+ +  + + +++++ t+   f+  T++l    +  + ++ Dt+G  +   i+
  MMETSP1137-20121227|4065_1  27 KLVLIGDSGVGKSCLLLRFADDTYTESHISTIGvDFKIRTIQLEGKTI--KLQIWDTAGQERFRTIT 91 
                 6789************99998888888855543256666666554444..55899999976655555 PP

  == domain 2    score: 10.8 bits;  conditional E-value: 6.1e-05
   TIGR03597  53 dflnllnslsekkalvvavvD.....ifdlegslikelkrfvken.kvllvvNKidllpksvklekikewlkke 120
                  f+ + +s+ +  + ++ v D      f+  +++++e+ r+++en + llv+NK dl  k++ +++ ++   ++
  MMETSP1137-20121227|4065_1  86 RFRTITSSYYRGAHGIIVVYDttdseTFEHVKTWLHEIDRYASENvNKLLVGNKSDLSSKRQVETEAAKEFANS 159
                 56666666666677777787755566677778*********98774789********98877665554444443 PP

>> TIGR00157  TIGR00157: ribosome small subunit-dependent GTPase A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.0   0.0   0.00028      0.19     126     142 ..      29      45 ..      26      59 .. 0.84
   2 !    7.3   0.0   0.00095      0.65      67     121 ..     128     183 ..      78     192 .. 0.86

  Alignments for each domain:
  == domain 1    score: 9.0 bits;  conditional E-value: 0.00028
   TIGR00157 126 vfaGqSGVGKSSLiNll 142
                 v++G SGVGKS L+ + 
  MMETSP1137-20121227|4065_1  29 VLIGDSGVGKSCLLLRF 45 
                 79***********9665 PP

  == domain 2    score: 7.3 bits;  conditional E-value: 0.00095
   TIGR00157  67 akniepiivlnkkdlleeedaekeqleelkn.lgYkvllvsvkneegleelkeklk 121
                  +n+++++v nk dl ++ ++e e ++e++n +    l +s+kn+ ++e+ + +++
  MMETSP1137-20121227|4065_1 128 SENVNKLLVGNKSDLSSKRQVETEAAKEFANsVSIPFLETSAKNATNVEDAFMTMA 183
                 5799******************888888876267778889*****99998766655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (236 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       244  (0.0594832); expected 82.0 (0.02)
Passed bias filter:                      202  (0.0492443); expected 82.0 (0.02)
Passed Vit filter:                        35  (0.00853242); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.34u 0.16s 00:00:00.50 Elapsed: 00:00:00.52
# Mc/sec: 599.03
//
Query:       MMETSP1137-20121227|4068_1  [L=429]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (429 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        52  (0.0126767); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.18s 00:00:00.47 Elapsed: 00:00:00.32
# Mc/sec: 1769.48
//
Query:       MMETSP1137-20121227|4069_1  [L=84]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (84 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        30  (0.00731351); expected 82.0 (0.02)
Passed bias filter:                       27  (0.00658216); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.15s 00:00:00.27 Elapsed: 00:00:00.26
# Mc/sec: 426.43
//
Query:       MMETSP1137-20121227|4070_1  [L=48]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (48 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        78  (0.0190151); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.15s 00:00:00.25 Elapsed: 00:00:00.37
# Mc/sec: 171.23
//
Query:       MMETSP1137-20121227|4072_1  [L=365]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   2.5e-114  380.9   0.2     3e-114  380.7   0.1    1.1  1  TIGR02082 metH: methionine synthase


Domain annotation for each model (and alignments):
>> TIGR02082  metH: methionine synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  380.7   0.1  7.3e-118    3e-114       2     298 ..      74     364 ..      73     365 .] 0.96

  Alignments for each domain:
  == domain 1    score: 380.7 bits;  conditional E-value: 7.3e-118
   TIGR02082   2 nkrilvlDGamGtqlqsanLteadFrge.eadl..arelkGnndlLnltkPeviaaihrayfeaGaDivetntFnsteialadYdledkayelnkkaaklarevadeftltpekkRfvaGslGPtnklatlspdverpefrnvtydelvdaYkeqvkglldGGvDl.lLietvfDtlnakaalfaveevfeekgr.elPilisgvivdksGrtLsGqtleaflaslehaeililGLnCalGadelrefvkelsetaealvsviPnaGLPnalgeYdltpeelakalkefaeegllnivGGCC 298
                 ++ri+v+DGamGt++q+++ te+dFrg+ ++d+  ++elkGnndlL+ t+P+ i++ihr+yf aGaDi etntF++t ia+adY++e+ +yelnk a +la  +a            vaG++GPtn++ ++sp+ve+p+frn t+de+v aYk qvkgl+dGG+    L   +fDtlnakaalfa+ e +ee g  +lPi+isg+ivd sGrtLsGqt+eaf++s++ha+ +++GLnCalGad++ +f+++ls+ ae++v  +PnaGLPna+g Yd+tpe+ a+++k f  + l+n +GGCC
  MMETSP1137-20121227|4072_1  74 QERIMVIDGAMGTTIQQYKFTEEDFRGDkFTDCpdTQELKGNNDLLVFTQPDTIREIHRRYFMAGADICETNTFSGTVIAQADYGMEHIVYELNKIACELAVDAA-----------LVAGAIGPTNRTLSISPSVEDPGFRNCTWDEVVSAYKTQVKGLIDGGATSsWLRPSIFDTLNAKAALFAIDEYYEESGCpRLPIMISGTIVDMSGRTLSGQTTEAFYVSMQHAKPICIGLNCALGADQMLPFMQALSNVAECFVHSYPNAGLPNAMGGYDETPESFAASVKLFCDNNLVNALGGCC 364
                 79**************************98888335799********************************************************9999997765...........59*********************************************975278889********************996479******************************************************************************************************** PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (365 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       149  (0.0363237); expected 82.0 (0.02)
Passed bias filter:                      144  (0.0351048); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.17s 00:00:00.51 Elapsed: 00:00:00.59
# Mc/sec: 816.54
//
Query:       MMETSP1137-20121227|4073_1  [L=324]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (324 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       148  (0.03608); expected 82.0 (0.02)
Passed bias filter:                      117  (0.0285227); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.14s 00:00:00.41 Elapsed: 00:00:00.51
# Mc/sec: 838.52
//
Query:       MMETSP1137-20121227|4074_1  [L=433]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (433 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        90  (0.0219405); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.15s 00:00:00.43 Elapsed: 00:00:00.45
# Mc/sec: 1270.03
//
Query:       MMETSP1137-20121227|4075_1  [L=112]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (112 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        69  (0.0168211); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.15s 00:00:00.30 Elapsed: 00:00:00.27
# Mc/sec: 547.51
//
Query:       MMETSP1137-20121227|4076_1  [L=146]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (146 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        44  (0.0107265); expected 82.0 (0.02)
Passed bias filter:                       44  (0.0107265); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.45
# Mc/sec: 428.23
//
Query:       MMETSP1137-20121227|4077_1  [L=111]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (111 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        27  (0.00658216); expected 82.0 (0.02)
Passed bias filter:                       24  (0.0058508); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.18s 00:00:00.32 Elapsed: 00:00:00.30
# Mc/sec: 488.36
//
Query:       MMETSP1137-20121227|4078_1  [L=88]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (88 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        58  (0.0141394); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.13s 00:00:00.26 Elapsed: 00:00:00.28
# Mc/sec: 414.82
//
Query:       MMETSP1137-20121227|4079_1  [L=61]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        62  (0.0151146); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.12s 00:00:00.24 Elapsed: 00:00:00.24
# Mc/sec: 335.47
//
Query:       MMETSP1137-20121227|4080_1  [L=496]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (496 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       101  (0.0246221); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.16s 00:00:00.49 Elapsed: 00:00:00.52
# Mc/sec: 1258.97
//
Query:       MMETSP1137-20121227|4081_1  [L=107]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (107 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        59  (0.0143832); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.15s 00:00:00.29 Elapsed: 00:00:00.28
# Mc/sec: 504.39
//
Query:       MMETSP1137-20121227|4082_1  [L=266]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.6e-26   90.3   0.7    6.3e-20   69.3   0.0    2.3  2  TIGR00446 nop2p: NOL1/NOP2/sun family putative RNA methylase
    2.8e-22   77.3   0.0    6.7e-17   59.5   0.0    2.1  2  TIGR00563 rsmB: ribosomal RNA small subunit methyltransferase B
  ------ inclusion threshold ------
      0.022   12.4   0.0      0.038   11.7   0.0    1.3  1  TIGR01708 typeII_sec_gspH: general secretion pathway protein H


Domain annotation for each model (and alignments):
>> TIGR00446  nop2p: NOL1/NOP2/sun family putative RNA methylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.3   0.0   4.6e-23   6.3e-20      33     155 ..      76     201 ..      23     218 .. 0.89
   2 !   19.3   0.3   8.6e-08   0.00012     194     224 ..     221     251 ..     210     258 .. 0.86

  Alignments for each domain:
  == domain 1    score: 69.3 bits;  conditional E-value: 4.6e-23
   TIGR00446  33 fevkesalsigatpeyllGlyllqeassmlPvlalepeekervlDlaaaPGgkttqisallkneGaivanevsksRvkvLianinRlGvlnvavinvDgRkfgavvlk...fDriLlDaPCsgeGv 155
                 +   + + +i+++p    G +++q+++s+ P lal p +  +v+D + aPG kt +++al++ +G ++a e ++ R   L++ ++  G++ +  ++++  k++ +  +   + ++LlD  Cs +G+
  MMETSP1137-20121227|4082_1  76 VFQPKGKSDISRVPMVARGELVVQQKASCFPALALAPPPGATVIDGCSAPGQKTSHLAALMEGQGRLLAFEQDERRFMLLKQMLKQKGAVCAEAVHANFLKVDPTAAEycdVTHVLLDPSCSSSGM 201
                 445567789*****************************************************************************************9999988887766779**********98 PP

  == domain 2    score: 19.3 bits;  conditional E-value: 8.6e-08
   TIGR00446 194 vlvYstCsleveeneevvdyllrkrkdvvev 224
                  lvYstCs++  ene vv+ +l  + + v++
  MMETSP1137-20121227|4082_1 221 ALVYSTCSVNDMENECVVEAVLSAQSKFVLE 251
                 69******************99998887776 PP

>> TIGR00563  rsmB: ribosomal RNA small subunit methyltransferase B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.5   0.0   4.9e-20   6.7e-17     177     331 ..      24     201 ..      16     206 .. 0.84
   2 !   15.8   0.0     9e-07    0.0012     370     404 ..     221     255 ..     210     262 .. 0.85

  Alignments for each domain:
  == domain 1    score: 59.5 bits;  conditional E-value: 4.9e-20
   TIGR00563 177 Rvnslkasreelldllaee...................Gvegeksd.aedavkle..kpiavtklpgfeeGwvtvqDasaqlvatlLePkneetilDvCaaPGGktthilelakdqaqvvalDleehrlkrvkenleRLgltiikveekdadkageke.evekfDRiLlDaPCsalGv 331
                 Rvn+l  s   +++ lae+                   G   + +   +d + ++      +++ p+ + G + vq +++ + a +L+P ++ t++D C aPG kt+h++ l++ q++++a + +e+r   +k+ l+  g   +++ + +  k  ++  e   +  +LlD  Cs+ G+
  MMETSP1137-20121227|4082_1  24 RVNTLLRSMGAVRSELAETgxvlvdghmqrrlgqrhlhGRACKLDMhVPDLIVFQpkGKSDISRVPMVARGELVVQQKASCFPALALAPPPGATVIDGCSAPGQKTSHLAALMEGQGRLLAFEQDERRFMLLKQMLKQKGAVCAEAVHANFLKVDPTAaEYCDVTHVLLDPSCSSSGM 201
                 88888888888888888888888888888888888777766665544777776652134579999999************************************************************************9988886666666666656777999*********9985 PP

  == domain 2    score: 15.8 bits;  conditional E-value: 9e-07
   TIGR00563 370 tLvYstCtllpeeneeqikaFlaeledlplekrlp 404
                  LvYstC+++  ene +++a l    ++ le  lp
  MMETSP1137-20121227|4082_1 221 ALVYSTCSVNDMENECVVEAVLSAQSKFVLEPALP 255
                 79******************998888887777666 PP

>> TIGR01708  typeII_sec_gspH: general secretion pathway protein H
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   2.8e-05     0.038      51     127 ..     129     203 ..     126     214 .. 0.88

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 2.8e-05
   TIGR01708  51 laqeeavvdgrlvglrledkgirFveraakarkwqaltaeeleltdwrtesdevterardekevLllpegeasplsl 127
                 +++  a ++g+ ++l +e+   rF+  ++  ++  a+ ae +++  ++ +++  +    d ++vLl+p    s++sl
  MMETSP1137-20121227|4082_1 129 TSHLAALMEGQGRLLAFEQDERRFMLLKQMLKQKGAVCAEAVHANFLKVDPT--AAEYCDVTHVLLDPSCSSSGMSL 203
                 5667899******************9888888889***************99..555666679************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (266 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       104  (0.0253535); expected 82.0 (0.02)
Passed bias filter:                       98  (0.0238908); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.27u 0.14s 00:00:00.41 Elapsed: 00:00:00.46
# Mc/sec: 763.24
//
Query:       MMETSP1137-20121227|4083_1  [L=271]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.9e-07   26.1   0.0    9.3e-07   25.7   0.0    1.1  1  TIGR00643 recG: ATP-dependent DNA helicase RecG
    1.2e-05   21.7   0.0    1.5e-05   21.4   0.0    1.1  1  TIGR00580 mfd: transcription-repair coupling factor


Domain annotation for each model (and alignments):
>> TIGR00643  recG: ATP-dependent DNA helicase RecG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.7   0.0   4.5e-10   9.3e-07     509     574 ..      12      77 ..       3      85 .. 0.90

  Alignments for each domain:
  == domain 1    score: 25.7 bits;  conditional E-value: 4.5e-10
   TIGR00643 509 vdiLvaTtviEvGvdvPnatvmviedaeRfGlsqLHQLRGRvgRgekksyclLva.epkseeakkRL 574
                  ++Lv+T ++  G+dvP+   +v+ da  + l    Q RGR +R ek+++ +Lv   p++e++++R 
  MMETSP1137-20121227|4083_1  12 SSVLVSTPLLAEGIDVPQCDTLVLVDATGLSLGSYTQCRGR-ARAEKAAFGVLVPaCPTNESQQTRT 77 
                 579**************************************.7***********9777777777775 PP

>> TIGR00580  mfd: transcription-repair coupling factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   0.0   7.2e-09   1.5e-05     709     764 ..      10      64 ..       2      94 .. 0.85

  Alignments for each domain:
  == domain 1    score: 21.4 bits;  conditional E-value: 7.2e-09
   TIGR00580 709 kefdvLvcTtiiEsGidipnaNTiiierAdkfGlaqLyQLrGRvGRskkkayayll 764
                 + + vLv+T ++  Gid+p+  T+++ +A  + l    Q rGR  R +k a+  l+
  MMETSP1137-20121227|4083_1  10 QGSSVLVSTPLLAEGIDVPQCDTLVLVDATGLSLGSYTQCRGRA-RAEKAAFGVLV 64 
                 5678***************************************5.99999998665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (271 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       105  (0.0255973); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.24u 0.15s 00:00:00.39 Elapsed: 00:00:00.40
# Mc/sec: 894.23
//
Query:       MMETSP1137-20121227|4084_1  [L=509]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (509 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       107  (0.0260848); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.17s 00:00:00.52 Elapsed: 00:00:00.33
# Mc/sec: 2035.83
//
Query:       MMETSP1137-20121227|4085_1  [L=162]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (162 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        81  (0.0197465); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.13s 00:00:00.30 Elapsed: 00:00:00.28
# Mc/sec: 737.32
//
Query:       MMETSP1137-20121227|4086_1  [L=538]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0014   14.8   0.0      0.002   14.3   0.0    1.1  1  TIGR03925 T7SS_EccC_b: type VII secretion protein EccCb
     0.0035   15.2   0.1      0.008   14.0   0.0    1.6  2  TIGR03499 FlhF: flagellar biosynthesis protein FlhF
     0.0084   11.5   0.0      0.012   11.0   0.0    1.1  1  TIGR00956 3a01205: pleiotropic drug resistance family protein
     0.0095   13.3   0.0      0.027   11.8   0.0    1.7  1  TIGR03420 DnaA_homol_Hda: DnaA regulatory inactivator Hda


Domain annotation for each model (and alignments):
>> TIGR03925  T7SS_EccC_b: type VII secretion protein EccCb
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.0     2e-06     0.002     359     424 ..     160     222 ..     153     235 .. 0.81

  Alignments for each domain:
  == domain 1    score: 14.3 bits;  conditional E-value: 2e-06
   TIGR03925 359 aeephllvlGdsesGktallraiaeevvernspeearlvvvDyrrsllgavpeeylagyaassaav 424
                 +e++  + +G ++ Gkt ll++ia+ + +  + ++   +vvD rr+  ++      a+y  +++ +
  MMETSP1137-20121227|4086_1 160 DESRMTMLIGGKSVGKTLLLKKIAADLNS--NTQQLA-LVVDARRHGTDLAAGIVAAAYEQNQKXI 222
                 5788899********************55..444444.679*******999999999999888876 PP

>> TIGR03499  FlhF: flagellar biosynthesis protein FlhF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.0   7.8e-06     0.008     160     234 ..     128     196 ..     108     204 .. 0.74
   2 ?   -2.4   0.0       0.8   8.2e+02     160     166 ..     268     274 ..     211     348 .. 0.58

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 7.8e-06
   TIGR03499 160 lleklkekedaeeareklreaLekklsvkkeedeilekggviaLvGptGvGKTTTlAKLAarfvlehgkkkVali 234
                  ++++++ +  ++ + + r+ L + +   +e+ ++ ++ ++ +L+G   vGKT  l K+Aa +  +   ++ al+
  MMETSP1137-20121227|4086_1 128 HIQECRK-AFFHQKKLWDRDELYEII---AESLSASDESRMTMLIGGKSVGKTLLLKKIAADLNSN--TQQLALV 196
                 4444444.555666666667777777...77778889999*********************99877..4456665 PP

  == domain 2    score: -2.4 bits;  conditional E-value: 0.8
   TIGR03499 160 lleklke 166
                 ++e + +
  MMETSP1137-20121227|4086_1 268 FVEAAHN 274
                 2222222 PP

>> TIGR00956  3a01205: pleiotropic drug resistance family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.0   0.0   1.2e-05     0.012      26     114 ..     101     189 ..      87     202 .. 0.87

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 1.2e-05
   TIGR00956  26 sklgvaykdlsvegvaadaeyqstlvnillklleeilrklkkekeskkfdilkdvdglikpgelvvvLGrPgsGcstlLksiasktegf 114
                  + gv ++  ++++v+ + +  +   + + ++ ++++++ k  ++++  +i+ +  +    +++++++G  + G++ lLk ia++++  
  MMETSP1137-20121227|4086_1 101 GEEGVLWEAAKADAVQHGFASPELYLQHIQECRKAFFHQKKLWDRDELYEIIAESLSASDESRMTMLIGGKSVGKTLLLKKIAADLNSN 189
                 677999999999999999999999999999999999999999999999*****99999*************************998765 PP

>> TIGR03420  DnaA_homol_Hda: DnaA regulatory inactivator Hda
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.8   0.0   2.7e-05     0.027      31      75 ..     155     200 ..     134     222 .. 0.79

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 2.7e-05
   TIGR03420  31 elaeakaerllylwGesgsGksHLLqAacaaaeeagksai.ylplk 75 
                 +l++++++r++ l+G +++Gk+ LL+ ++a+++++ ++ + +++++
  MMETSP1137-20121227|4086_1 155 SLSASDESRMTMLIGGKSVGKTLLLKKIAADLNSNTQQLAlVVDAR 200
                 44778999***********************999877654044444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (538 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       239  (0.0582643); expected 82.0 (0.02)
Passed bias filter:                      185  (0.0451); expected 82.0 (0.02)
Passed Vit filter:                        22  (0.00536324); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.48u 0.13s 00:00:00.61 Elapsed: 00:00:00.61
# Mc/sec: 1164.10
//
Query:       MMETSP1137-20121227|4087_1  [L=256]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (256 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       105  (0.0255973); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.15s 00:00:00.36 Elapsed: 00:00:00.49
# Mc/sec: 689.58
//
Query:       MMETSP1137-20121227|4088_1  [L=145]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (145 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        82  (0.0199902); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.17s 00:00:00.34 Elapsed: 00:00:00.33
# Mc/sec: 579.95
//
Query:       MMETSP1137-20121227|4089_1  [L=290]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (290 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       110  (0.0268162); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.15s 00:00:00.39 Elapsed: 00:00:00.33
# Mc/sec: 1159.90
//
Query:       MMETSP1137-20121227|4090_1  [L=106]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (106 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        34  (0.00828864); expected 82.0 (0.02)
Passed bias filter:                       34  (0.00828864); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.14s 00:00:00.29 Elapsed: 00:00:00.64
# Mc/sec: 218.61
//
Query:       MMETSP1137-20121227|4091_1  [L=190]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.7e-13   47.0   0.0    3.1e-13   46.8   0.0    1.0  1  TIGR01389 recQ: ATP-dependent DNA helicase RecQ
    1.4e-12   45.0   0.0    1.7e-12   44.7   0.0    1.0  1  TIGR00614 recQ_fam: ATP-dependent DNA helicase, RecQ family
    7.8e-05   19.4   0.0    8.5e-05   19.2   0.0    1.1  1  TIGR00643 recG: ATP-dependent DNA helicase RecG
      0.001   14.7   0.0     0.0012   14.5   0.0    1.1  1  TIGR04121 DEXH_lig_assoc: DEXH box helicase, DNA ligase-associated
     0.0016   14.9   0.0      0.002   14.6   0.0    1.1  1  TIGR00595 priA: primosomal protein N'
      0.003   13.6   0.0     0.0036   13.4   0.0    1.1  1  TIGR03817 DECH_helic: helicase/secretion neighborhood putative DEAH-box helicase
     0.0041   13.3   0.0     0.0052   12.9   0.0    1.1  1  TIGR00580 mfd: transcription-repair coupling factor


Domain annotation for each model (and alignments):
>> TIGR01389  recQ: ATP-dependent DNA helicase RecQ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.8   0.0   5.3e-16   3.1e-13     236     335 ..      37     136 ..      31     175 .. 0.91

  Alignments for each domain:
  == domain 1    score: 46.8 bits;  conditional E-value: 5.3e-16
   TIGR01389 236 kveelaeaLeskgiealaYhaGlskkvRaeaqekFleddvkvvvatvaFGmGidksdvRfvihldlPknlesyyqeaGRaGRDGlkaeaillyseaDlal 335
                 +v +++++L+ +g++ +a h+   ++vR+ ++++F e +v ++vat     G+d + v  vi +  P  +e y    GR GR G+   a +++++ D a 
  MMETSP1137-20121227|4091_1  37 QVARVEQTLQRRGFDCIAIHGDQTQAVRSASLQSFKEGKVPLLVATDVAARGLDIPLVQVVINFTFPLTIEDYVHRIGRTGRGGKTGIAHTFFTNFDKAH 136
                 7899**************************************************************************************9999888654 PP

>> TIGR00614  recQ_fam: ATP-dependent DNA helicase, RecQ family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.7   0.0   2.9e-15   1.7e-12     239     347 ..      38     149 ..      31     169 .. 0.87

  Alignments for each domain:
  == domain 1    score: 44.7 bits;  conditional E-value: 2.9e-15
   TIGR00614 239 veqvaaeLqkkglaaaaYhagleesarkevqkkflrdeiqvvvatvafGmGinkpdvRfvihyslpksiesYYqesGRaGRDglksecvlfyapaDval...lrrllveekd 347
                 v +v ++Lq++g  + a h +  ++ r+   + f + ++ ++vat     G++ p v+ vi +  p  ie Y   +GR GR g +  ++ f++  D a    l+++l e ++
  MMETSP1137-20121227|4091_1  38 VARVEQTLQRRGFDCIAIHGDQTQAVRSASLQSFKEGKVPLLVATDVAARGLDIPLVQVVINFTFPLTIEDYVHRIGRTGRGGKTGIAHTFFTNFDKAHagaLQNILREANQ 149
                 678999***************************************9999*******************************************99887651114555555544 PP

>> TIGR00643  recG: ATP-dependent DNA helicase RecG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   0.0   1.5e-07   8.5e-05     481     556 ..      48     122 ..      23     148 .. 0.76

  Alignments for each domain:
  == domain 1    score: 19.2 bits;  conditional E-value: 1.5e-07
   TIGR00643 481 pklnvallhgrlksdekeevleeFrekevdiLvaTtviEvGvdvPnatvmviedaeRfGlsq.LHQLRGRvgRgekk 556
                   + +  +hg  +++ + + l++F+e++v +LvaT v   G+d+P + v++      + +    H + GR gRg k 
  MMETSP1137-20121227|4091_1  48 RGFDCIAIHGDQTQAVRSASLQSFKEGKVPLLVATDVAARGLDIPLVQVVI-NFTFPLTIEDyVHRI-GRTGRGGKT 122
                 44677789*************************************988754.444445554413443.666666655 PP

>> TIGR04121  DEXH_lig_assoc: DEXH box helicase, DNA ligase-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.0     2e-06    0.0012     279     344 ..      53     117 ..      37     153 .. 0.88

  Alignments for each domain:
  == domain 1    score: 14.5 bits;  conditional E-value: 2e-06
   TIGR04121 279 ialhHgsldkeqRekveaalkagklravvcTssLdLGvDfgdvdlviqvGspkgvaRllQRiGRsn 344
                 ia+ Hg  +++ R+   + +k+gk+ ++v+T     G+D   v+ vi+   p  +   + RiGR++
  MMETSP1137-20121227|4091_1  53 IAI-HGDQTQAVRSASLQSFKEGKVPLLVATDVAARGLDIPLVQVVINFTFPLTIEDYVHRIGRTG 117
                 666.799999******************************************************87 PP

>> TIGR00595  priA: primosomal protein N'
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.0   3.5e-06     0.002     276     350 ..      40     108 ..      28     115 .. 0.76

  Alignments for each domain:
  == domain 1    score: 14.6 bits;  conditional E-value: 3.5e-06
   TIGR00595 276 kveeelkkllpkariarldsDttrrkkalealleqfaagkidiliGtqmiaKGldfpkvtlvgvlsaDsglklpd 350
                 +ve++l+++  +  ++ +  D+t+  +  +a+l++f++gk+ +l+ t + a+Gld p v++v  ++    l++ d
  MMETSP1137-20121227|4091_1  40 RVEQTLQRR--GFDCIAIHGDQTQAVR--SASLQSFKEGKVPLLVATDVAARGLDIPLVQVV--INFTFPLTIED 108
                 555555554..4556677778777776..899**************************9864..55555555555 PP

>> TIGR03817  DECH_helic: helicase/secretion neighborhood putative DEAH-box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.0   6.2e-06    0.0036     323     379 ..      69     125 ..      34     133 .. 0.92

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 6.2e-06
   TIGR03817 323 ralkdGellgvaatnalelGvdisGldavviaGfPGtvaslwqqaGraGrrgqdalv 379
                 +++k+G++  ++at+    G+di  +  v+   fP t+  +  ++Gr+Gr g+  ++
  MMETSP1137-20121227|4091_1  69 QSFKEGKVPLLVATDVAARGLDIPLVQVVINFTFPLTIEDYVHRIGRTGRGGKTGIA 125
                 57899***********************************************99886 PP

>> TIGR00580  mfd: transcription-repair coupling factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.9   0.0   8.9e-06    0.0052     690     764 ..      55     128 ..      50     145 .. 0.82

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 8.9e-06
   TIGR00580 690 aHgqmeeeeleevmleFlkkefdvLvcTtiiEsGidipnaNTiiierAdkfGlaqLyQLrGRvGRskkkayayll 764
                 +Hg  ++      +++F+++++ +Lv+T +   G+dip +  ++i+    + + +     GR GR+ k + a+  
  MMETSP1137-20121227|4091_1  55 IHGDQTQAVRSASLQSFKEGKVPLLVATDVAARGLDIPLVQ-VVINFTFPLTIEDYVHRIGRTGRGGKTGIAHTF 128
                 68888888888899************************997.566777788888887778999999998766543 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (190 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       116  (0.0282789); expected 82.0 (0.02)
Passed bias filter:                      111  (0.02706); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.25u 0.17s 00:00:00.42 Elapsed: 00:00:00.36
# Mc/sec: 696.61
//
Query:       MMETSP1137-20121227|4092_1  [L=45]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (45 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        41  (0.00999512); expected 82.0 (0.02)
Passed bias filter:                       41  (0.00999512); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.28
# Mc/sec: 204.81
//
Query:       MMETSP1137-20121227|4093_1  [L=578]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00038   17.3   0.0    0.00061   16.6   0.0    1.2  1  TIGR03229 benzo_1_2_benA: benzoate 1,2-dioxygenase, large subunit


Domain annotation for each model (and alignments):
>> TIGR03229  benzo_1_2_benA: benzoate 1,2-dioxygenase, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0   1.5e-07   0.00061      79     113 ..     123     157 ..     107     164 .. 0.90

  Alignments for each domain:
  == domain 1    score: 16.6 bits;  conditional E-value: 1.5e-07
   TIGR03229  79 nacshrgamlcrhkrgnkatytcpfhgwtfnnsgk 113
                 + c hrga l+  + + ++++tc +hgw f+ +g 
  MMETSP1137-20121227|4093_1 123 DRCPHRGAPLSYGRLEVNGSLTCSLHGWQFTSDGG 157
                 67*****************************9996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (578 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        68  (0.0165773); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.16s 00:00:00.51 Elapsed: 00:00:00.44
# Mc/sec: 1733.86
//
Query:       MMETSP1137-20121227|4094_1  [L=468]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (468 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        56  (0.0136519); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.16s 00:00:00.47 Elapsed: 00:00:00.40
# Mc/sec: 1544.27
//
Query:       MMETSP1137-20121227|4095_1  [L=665]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (665 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       111  (0.02706); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.15s 00:00:00.57 Elapsed: 00:00:00.54
# Mc/sec: 1625.42
//
Query:       MMETSP1137-20121227|4096_1  [L=350]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (350 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        60  (0.014627); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.15s 00:00:00.43 Elapsed: 00:00:00.39
# Mc/sec: 1184.52
//
Query:       MMETSP1137-20121227|4097_1  [L=155]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (155 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        87  (0.0212092); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.17s 00:00:00.34 Elapsed: 00:00:00.47
# Mc/sec: 435.28
//
Query:       MMETSP1137-20121227|4098_1  [L=149]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (149 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        56  (0.0136519); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.12s 00:00:00.29 Elapsed: 00:00:00.31
# Mc/sec: 634.40
//
Query:       MMETSP1137-20121227|4100_1  [L=338]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (338 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        93  (0.0226719); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.14s 00:00:00.42 Elapsed: 00:00:00.56
# Mc/sec: 782.67
//
Query:       MMETSP1137-20121227|4101_1  [L=813]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (813 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        82  (0.0199902); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.49u 0.15s 00:00:00.64 Elapsed: 00:00:00.46
# Mc/sec: 2332.76
//
Query:       MMETSP1137-20121227|4102_1  [L=797]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.6e-09   33.5   0.0    6.8e-09   32.9   0.0    1.2  1  TIGR03204 pimC_large: pimeloyl-CoA dehydrogenase, large subunit
    2.3e-05   21.3   0.0    3.8e-05   20.6   0.0    1.3  1  TIGR04022 sulfur_SfnB: sulfur acquisition oxidoreductase, SfnB family
    5.9e-05   19.8   0.0    0.00043   16.9   0.0    1.9  2  TIGR03207 cyc_hxne_CoA_dh: cyclohexanecarboxyl-CoA dehydrogenase
    0.00049   17.1   0.1       0.17    8.8   0.0    2.3  2  TIGR03203 pimD_small: pimeloyl-CoA dehydrogenase, small subunit


Domain annotation for each model (and alignments):
>> TIGR03204  pimC_large: pimeloyl-CoA dehydrogenase, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.9   0.0   6.6e-12   6.8e-09      39     227 ..     124     326 ..     104     350 .. 0.68

  Alignments for each domain:
  == domain 1    score: 32.9 bits;  conditional E-value: 6.6e-12
   TIGR03204  39 keemvewyrilnkkgwgvshwpkqyggtgwtsvq..dyifneelqaapapqplafgvsmv.gpviytfgneeqkkrflprianvddwwcqgfsepgsgsdlaslk...tkaekkgdkyiing..qktwttlaqhadli.fclcrtdata....kkqegisfilvdmkskgitvrpiqt.idggsevnevffddvevplenlvg 227
                 k+   e +  +  kg+   + pk++gg g++++     + +   +   a + +a+  s+  g ++  +g++eqk  flpr+a+     c g++ p sgsd +sl       e++  +  +    +k + tla  a ++ + l   d+         eg ++ l++    g+ + p +  ++ +     v  ddv +p+  ++g
  MMETSP1137-20121227|4102_1 124 KDMPAEAWDYMRDKGFFSMKIPKEWGGKGFSTMAvsSVLAKLGTHCFDANATVAVPNSLGpGELLVRYGTDEQKGYFLPRLADGTLIPCFGLTGPHSGSDATSLIgsyGTVERRNGELGVRAtfRKRYITLAPVAGVVgVGLDLKDPEGllggTGSEGFTVALLERGHEGLRMGPRHMpLNAAFMNGTVEGDDVWIPMTSILG 326
                 45557889999*******************976510555555667788999999999984478999**********************************9998522223455444443332126778888877776623455555543111144556666666666666666665541333333334555666666666554 PP

>> TIGR04022  sulfur_SfnB: sulfur acquisition oxidoreductase, SfnB family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   0.0   3.7e-08   3.8e-05      19     115 ..     113     209 ..      97     330 .. 0.77

  Alignments for each domain:
  == domain 1    score: 20.6 bits;  conditional E-value: 3.7e-08
   TIGR04022  19 aefaeeaaeRDrerrlPveeldafsqsGLwgitvPrayGGaevsaatlaeviaiisa..aDpslgqipqnhfallevlrlegseeqkrfffeevlaGeR 115
                 + ++ + ++ D  + +P+e  d + + G +++++P+++GG + s+++++ v+a + +   D++ +    n +   e l   g++eqk +f  ++ +G+ 
  MMETSP1137-20121227|4102_1 113 KMLKDHEVAID--KDMPAEAWDYMRDKGFFSMKIPKEWGGKGFSTMAVSSVLAKLGThcFDANATVAVPNSLGPGELLVRYGTDEQKGYFLPRLADGTL 209
                 55555555544..579*************************************99863358888888899********************999999974 PP

>> TIGR03207  cyc_hxne_CoA_dh: cyclohexanecarboxyl-CoA dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.0   4.2e-07   0.00043      40     132 ..     133     227 ..     108     253 .. 0.89
   2 ?    0.2   0.0      0.05        51     246     344 ..     355     453 ..     303     481 .. 0.66

  Alignments for each domain:
  == domain 1    score: 16.9 bits;  conditional E-value: 4.2e-07
   TIGR03207  40 dmgelgflgpelseeygglgvgclaagvlleeiaradlsv.syvnllasln.gqilaqharpeiakewlakliageallaialteprggsdaarl 132
                  m + gf++ ++++e+gg+g  ++a   +l ++    ++  + v +  sl  g++l +++  e    +l +l  g  + +  lt p++gsda++l
  MMETSP1137-20121227|4102_1 133 YMRDKGFFSMKIPKEWGGKGFSTMAVSSVLAKLGTHCFDAnATVAVPNSLGpGELLVRYGTDEQKGYFLPRLADGTLIPCFGLTGPHSGSDATSL 227
                 58899********************9999999998888752578899999559***************************************998 PP

  == domain 2    score: 0.2 bits;  conditional E-value: 0.05
   TIGR03207 246 lavaraaldetweyvaereafgkklsafqgvsfpladletqveaa.rllclrtlwlkdhglphtseaamckwwapklaydvihqcllshghggydrgdle 344
                 ++ ar+      +y + r+ f  ++++f g+   la +     a+   + l    + +h +p    + m k  +      v+ + +   g  g +rg+++
  MMETSP1137-20121227|4102_1 355 VGAARTVSAAVGAYSRIRKQFRVPIAEFGGIQEALARAGRESYATiAGVELMNAIVDNHEAPMVLSSIM-KQSCTERGRRVVQDGMDILGGAGISRGEMN 453
                 455666666677888899999999999999999999886654443034556666677777777666555.444555566677777777777777777665 PP

>> TIGR03203  pimD_small: pimeloyl-CoA dehydrogenase, small subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.9   0.0    0.0012       1.2      42     118 ..     130     209 ..      98     225 .. 0.78
   2 !    8.8   0.0   0.00016      0.17     231     283 ..     338     390 ..     334     457 .. 0.78

  Alignments for each domain:
  == domain 1    score: 5.9 bits;  conditional E-value: 0.0012
   TIGR03203  42 vwgklaeqgllglpfseadggfgagavetmivmealgkalv.lepylatv.vig.ggflrragsaaqkaaylpgiidgsk 118
                  w  + ++g++ + + ++ gg g  ++    v+  lg      +  +a    +g g +l r g+++qk  +lp + dg+ 
  MMETSP1137-20121227|4102_1 130 AWDYMRDKGFFSMKIPKEWGGKGFSTMAVSSVLAKLGTHCFdANATVAVPnSLGpGELLVRYGTDEQKGYFLPRLADGTL 209
                 699999999999999999999999888888889999865541333332211244377999*****************975 PP

  == domain 2    score: 8.8 bits;  conditional E-value: 0.00016
   TIGR03203 231 liervvddarvalcaeavglmdeslkttveyiktrkqfgvaigsfqvlqhraa 283
                 ++e++ +   v+l a avg+      +   y + rkqf v+i  f  +q   a
  MMETSP1137-20121227|4102_1 338 FVEALAEGRGVSLPAGAVGAARTVSAAVGAYSRIRKQFRVPIAEFGGIQEALA 390
                 578888888899********9999999999***************99997544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (797 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       145  (0.0353486); expected 82.0 (0.02)
Passed bias filter:                      106  (0.0258411); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.56u 0.17s 00:00:00.73 Elapsed: 00:00:00.63
# Mc/sec: 1669.77
//
Query:       MMETSP1137-20121227|4103_1  [L=80]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0021   15.3   0.1     0.0023   15.2   0.1    1.0  1  TIGR03167 tRNA_sel_U_synt: tRNA 2-selenouridine synthase


Domain annotation for each model (and alignments):
>> TIGR03167  tRNA_sel_U_synt: tRNA 2-selenouridine synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.1   5.7e-07    0.0023      44     108 ..       3      71 ..       1      77 [. 0.84

  Alignments for each domain:
  == domain 1    score: 15.2 bits;  conditional E-value: 5.7e-07
   TIGR03167  44 gqeeAvklGlelvaeklkelleevqelaekeke..vllyCwRGGlRSksl.awllkeaglevl.rleGG 108
                 ++ +A ++  +lv++kl+ +++  +++ + +k+   ll C+ GG R +   + l +++g++v   l+GG
  MMETSP1137-20121227|4103_1   3 SRPSALERLESLVGKKLDVHVRVRHAVLQLRKDqvSLLLCADGGARGGKRpQRLDAQVGHRVGgHLDGG 71 
                 56678899999*********98877777766666799**********9999*********995378888 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (80 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        83  (0.020234); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.12u 0.15s 00:00:00.27 Elapsed: 00:00:00.27
# Mc/sec: 391.08
//
Query:       MMETSP1137-20121227|4104_1  [L=812]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.5e-05   19.8   0.1    0.00012   19.0   0.1    1.4  1  TIGR00181 pepF: oligoendopeptidase F
    0.00044   16.8   0.0      0.055    9.9   0.0    2.1  2  TIGR02289 M3_not_pepF: oligoendopeptidase, M3 family
     0.0048   13.7   0.4     0.0095   12.7   0.3    1.4  1  TIGR02290 M3_fam_3: oligoendopeptidase, pepF/M3 family


Domain annotation for each model (and alignments):
>> TIGR00181  pepF: oligoendopeptidase F
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.1   8.6e-08   0.00012     377     418 ..     583     625 ..     580     630 .. 0.85

  Alignments for each domain:
  == domain 1    score: 19.0 bits;  conditional E-value: 8.6e-08
   TIGR00181 377 dvftLvHElGHsvhslfsske.qpyslseysiflaEvaStfNe 418
                 ++ tL HE+GH++hsl+++ e q  s  + +  l+Ev+St  e
  MMETSP1137-20121227|4104_1 583 QLRTLFHEVGHALHSLLARTEfQHFSGTRVPFELVEVPSTLLE 625
                 578***************9774778888899999*****9866 PP

>> TIGR02289  M3_not_pepF: oligoendopeptidase, M3 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.6   0.0    0.0015       2.1     182     220 ..     324     361 ..     315     382 .. 0.79
   2 !    9.9   0.0     4e-05     0.055     336     380 ..     582     627 ..     578     631 .. 0.82

  Alignments for each domain:
  == domain 1    score: 4.6 bits;  conditional E-value: 0.0015
   TIGR02289 182 iydeLvkvRtkiAknlgfeNyvdlayklleRtdYsaedv 220
                 ++de+  +R + A  +g++ y  +  +  eR++ ++  v
  MMETSP1137-20121227|4104_1 324 LLDEMLSTRAQLAAAAGYSSYASFV-ASHERIERDPAAV 361
                 79*******************9985.3344555455555 PP

  == domain 2    score: 9.9 bits;  conditional E-value: 4e-05
   TIGR02289 336 gdidvliHEvGHafqvyeslk.qllpeyrwltaeaaElaSmslEll 380
                  ++++l+HEvGHa+++   +  ++      +++e  E+ S  lE +
  MMETSP1137-20121227|4104_1 582 AQLRTLFHEVGHALHSLLARTeFQHFSGTRVPFELVEVPSTLLERF 627
                 5689************988876777777888999999999888865 PP

>> TIGR02290  M3_fam_3: oligoendopeptidase, pepF/M3 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.7   0.3     7e-06    0.0095     375     415 ..     583     625 ..     580     633 .. 0.84

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 7e-06
   TIGR02290 375 dvaTLAHELGHavHsellkd..qpllnarypltlAETASvFaE 415
                 ++ TL HE GHa+Hs l++   q +  +r+p  l E  S++ E
  MMETSP1137-20121227|4104_1 583 QLRTLFHEVGHALHSLLARTefQHFSGTRVPFELVEVPSTLLE 625
                 678***************9834578899999999999998776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (812 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        98  (0.0238908); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.53u 0.18s 00:00:00.71 Elapsed: 00:00:00.98
# Mc/sec: 1093.62
//
Query:       MMETSP1137-20121227|4105_1  [L=1640]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   3.2e-245  814.8   0.4   5.9e-201  668.1   0.0    2.0  2  TIGR00957 MRP_assoc_pro: multi drug resistance-associated protein (MRP)
   1.4e-126  421.5   0.0    1.4e-67  226.0   0.0    2.6  2  TIGR01271 CFTR_protein: cystic fibrosis transmembrane conductor regulator (CFTR)
    1.7e-89  298.7   0.4      2e-51  172.9   0.0    3.5  3  TIGR03375 type_I_sec_LssB: type I secretion system ATPase
    2.3e-88  294.9   7.0    1.5e-56  189.9   0.1    3.9  3  TIGR02203 MsbA_lipidA: lipid A export permease/ATP-binding protein MsbA
    3.1e-87  291.2  41.7    1.5e-50  170.2   5.5    5.3  5  TIGR02868 CydC: thiol reductant ABC exporter, CydC subunit
    1.3e-83  279.4  12.4    2.9e-47  159.4   1.8    3.7  3  TIGR02204 MsbA_rel: ABC transporter, permease/ATP-binding protein
      9e-81  270.1  17.2    1.9e-52  176.5   1.5    3.9  3  TIGR03797 NHLM_micro_ABC2: NHLM bacteriocin system ABC transporter, ATP-binding protein
      6e-79  264.2  15.9    2.3e-43  146.8   0.0    4.2  4  TIGR02857 CydD: thiol reductant ABC exporter, CydD subunit
    5.6e-77  257.3   7.7    8.6e-52  174.1   0.1    3.4  3  TIGR03796 NHLM_micro_ABC1: NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein
    1.1e-75  253.2   9.9    1.1e-50  170.5   0.0    3.9  3  TIGR00958 3a01208: antigen peptide transporter 2
      2e-71  239.0   8.7    5.3e-48  161.6   0.2    3.6  3  TIGR01846 type_I_sec_HlyB: type I secretion system ATPase
    3.5e-63  212.0   0.0    3.1e-39  132.9   0.0    3.5  3  TIGR01193 bacteriocin_ABC: ABC-type bacteriocin transporter
    1.1e-57  193.7   0.0    9.3e-28   94.9   0.0    3.1  3  TIGR01842 type_I_sec_PrtD: type I secretion system ATPase
    1.5e-51  173.5   0.0    3.1e-34  116.4   0.0    3.6  3  TIGR01192 chvA: glucan exporter ATP-binding protein
    7.7e-37  124.8   0.0    1.4e-15   55.1   0.0    3.3  3  TIGR00972 3a0107s01c2: phosphate ABC transporter, ATP-binding protein
    1.8e-34  117.0   0.0    1.7e-17   61.5   0.0    3.7  3  TIGR02315 ABC_phnC: phosphonate ABC transporter, ATP-binding protein
    7.1e-34  115.2   0.0    2.2e-18   64.5   0.0    3.4  3  TIGR02673 FtsE: cell division ATP-binding protein FtsE
    1.5e-31  107.7   0.1    1.2e-17   62.2   0.0    3.4  3  TIGR00960 3a0501s02: type II secretory pathway family protein
    2.4e-30  103.8   1.4    1.4e-21   75.0   0.2    3.2  2  TIGR03265 PhnT2: putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein
    3.1e-30  103.2   0.4    1.3e-18   65.2   0.1    3.5  3  TIGR03864 PQQ_ABC_ATP: ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system
    1.1e-29  101.4   0.0      8e-15   52.7   0.0    3.4  2  TIGR03410 urea_trans_UrtE: urea ABC transporter, ATP-binding protein UrtE
    7.6e-29   98.7   0.5    4.4e-13   47.2   0.0    3.3  3  TIGR01277 thiQ: thiamine ABC transporter, ATP-binding protein
    1.7e-28   97.7   2.7    2.9e-18   64.1   0.2    3.4  2  TIGR02142 modC_ABC: molybdate ABC transporter, ATP-binding protein
    3.3e-28   96.3   0.0    8.6e-17   58.6   0.0    3.0  2  TIGR00954 3a01203: peroxysomal long chain fatty acyl transporter
      5e-28   96.0   0.0    7.6e-13   46.1   0.0    3.2  3  TIGR01186 proV: glycine betaine/L-proline transport ATP binding subunit
    1.7e-27   94.1   0.0    1.2e-14   52.1   0.0    3.5  3  TIGR03608 L_ocin_972_ABC: putative bacteriocin export ABC transporter, lactococcin 972 group
    4.2e-27   93.0   1.6    2.2e-15   54.7   0.3    3.4  2  TIGR00968 3a0106s01: sulfate ABC transporter, ATP-binding protein
    5.2e-27   92.6   0.2    8.2e-13   46.2   0.1    4.1  3  TIGR02211 LolD_lipo_ex: lipoprotein releasing system, ATP-binding protein
    1.5e-26   91.2   1.3      2e-11   41.7   0.1    3.5  3  TIGR02769 nickel_nikE: nickel import ATP-binding protein NikE
    3.9e-26   89.8   3.2      1e-10   39.4   0.0    3.3  3  TIGR02982 heterocyst_DevA: ABC exporter ATP-binding subunit, DevA family
    4.4e-26   89.6  10.7    1.1e-16   58.7   1.7    3.8  2  TIGR03258 PhnT: 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT
      1e-25   88.6   6.9    5.1e-14   50.3   0.1    3.5  3  TIGR03771 anch_rpt_ABC: anchored repeat-type ABC transporter, ATP-binding subunit
    5.7e-25   85.9   2.1    1.3e-12   45.3   0.1    3.2  2  TIGR01187 potA: polyamine ABC transporter, ATP-binding protein
    1.2e-24   84.6   1.3    3.8e-12   43.9   0.1    3.6  3  TIGR01166 cbiO: cobalt ABC transporter, ATP-binding protein
    4.2e-24   83.0   0.4    7.9e-09   32.9   0.1    4.1  3  TIGR03005 ectoine_ehuA: ectoine/hydroxyectoine ABC transporter, ATP-binding protein EhuA
    7.3e-24   82.2  17.7    9.7e-15   52.3   2.2    3.8  3  TIGR03873 F420-0_ABC_ATP: proposed F420-0 ABC transporter, ATP-binding protein
    8.6e-24   82.0   0.3    2.5e-09   34.4   0.1    3.3  3  TIGR03415 ABC_choXWV_ATP: choline ABC transporter, ATP-binding protein
    1.4e-23   81.4   3.7    4.8e-12   43.8   0.2    3.8  2  TIGR01189 ccmA: heme ABC exporter, ATP-binding protein CcmA
    2.7e-23   80.5   0.1      2e-10   38.3   0.1    4.0  3  TIGR02324 CP_lyasePhnL: phosphonate C-P lyase system protein PhnL
    5.8e-23   79.4   1.3    7.7e-13   46.2   0.1    3.8  3  TIGR01188 drrA: daunorubicin resistance ABC transporter, ATP-binding protein
    1.2e-22   78.4   1.6    4.1e-14   50.6   0.2    3.0  2  TIGR01184 ntrCD: nitrate ABC transporter, ATP-binding proteins C and D
    1.5e-21   75.0   0.0      7e-11   40.1   0.0    3.3  3  TIGR03411 urea_trans_UrtD: urea ABC transporter, ATP-binding protein UrtD
    5.7e-21   72.7   3.1    4.9e-13   46.6   0.1    3.4  3  TIGR02314 ABC_MetN: D-methionine ABC transporter, ATP-binding protein
    5.8e-20   69.5   2.2    1.1e-10   39.1   0.0    3.5  3  TIGR02770 nickel_nikD: nickel import ATP-binding protein NikD
    3.5e-19   66.7   8.5      1e-10   38.9   1.5    3.7  2  TIGR01288 nodI: nodulation ABC transporter NodI
    1.4e-17   61.3   0.2    2.8e-05   20.7   0.0    3.8  3  TIGR03719 ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family
    1.5e-13   47.9   1.7    5.5e-08   29.6   0.3    3.9  3  TIGR03269 met_CoM_red_A2: methyl coenzyme M reductase system, component A2
    5.2e-13   44.6   0.1    5.4e-07   24.6   0.0    2.1  2  TIGR01257 rim_protein: rim ABC transporter
    9.9e-13   46.0   0.4    8.1e-05   20.0   0.1    4.0  3  TIGR03522 GldA_ABC_ATP: gliding motility-associated ABC transporter ATP-binding subunit GldA
    2.3e-12   43.9   1.1    2.5e-05   20.8   0.0    3.6  3  TIGR02633 xylG: D-xylose ABC transporter, ATP-binding protein
    7.5e-12   43.1   4.4    0.00053   17.4   0.2    3.6  3  TIGR02323 CP_lyasePhnK: phosphonate C-P lyase system protein PhnK
    8.3e-12   42.2   1.8    9.9e-06   22.2   0.0    3.7  3  TIGR01194 cyc_pep_trnsptr: cyclic peptide transporter
    7.5e-11   39.7   0.1    3.6e-05   21.1   0.0    3.9  3  TIGR01978 sufC: FeS assembly ATPase SufC
    7.7e-11   39.9   0.0    8.8e-06   23.4   0.0    3.3  2  TIGR03740 galliderm_ABC: lantibiotic protection ABC transporter, ATP-binding subunit
    3.5e-09   33.6   1.6    0.00065   16.2   0.1    3.2  2  TIGR00955 3a01204: pigment precursor permease
    5.3e-06   22.1   0.0      0.015   10.7   0.0    3.0  3  TIGR00956 3a01205: pleiotropic drug resistance family protein
     0.0014   14.7   0.6       0.36    6.7   0.0    3.1  3  TIGR00630 uvra: excinuclease ABC subunit A
  ------ inclusion threshold ------
      0.013   12.6   0.5       0.03   11.4   0.0    1.7  2  TIGR01420 pilT_fam: twitching motility protein
      0.016   12.8   0.4        1.4    6.5   0.0    2.3  2  TIGR00231 small_GTP: small GTP-binding protein domain
      0.046   11.2   0.7       0.13    9.7   0.0    2.0  2  TIGR03263 guanyl_kin: guanylate kinase
      0.054    9.2   0.3       0.39    6.3   0.0    1.9  2  TIGR00618 sbcc: exonuclease SbcC
       0.11    9.1   0.1        2.5    4.7   0.0    2.1  2  TIGR02928 TIGR02928: orc1/cdc6 family replication initiation protein
        0.6    6.3   0.2        0.9    5.8   0.1    1.2  1  TIGR00602 rad24: checkpoint protein rad24
       0.61    5.5   0.7       0.83    5.0   0.0    1.4  2  TIGR02168 SMC_prok_B: chromosome segregation protein SMC


Domain annotation for each model (and alignments):
>> TIGR00957  MRP_assoc_pro: multi drug resistance-associated protein (MRP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  144.9   0.1   6.4e-45   4.1e-43     331     649 ..     378     695 ..     361     714 .. 0.87
   2 !  668.1   0.0  9.2e-203  5.9e-201     652    1521 ..     746    1624 ..     727    1625 .. 0.88

  Alignments for each domain:
  == domain 1    score: 144.9 bits;  conditional E-value: 6.4e-45
   TIGR00957 331 llsfagpkllellikfvndrk..apdwqgylytallfvsallqtlvlqqyfhiifvsgvriktavvgavyrkalvitnsarksstvgeivnlmsvdaqrfmdlatylnllwsaplqvilalyllwlnlgpsvlagvavmvllvplnavvavktktyqvaqmkskdnriklmneilngikvlklyawelafkdkvlairqeelkvlkksaylaavgtftwvctpflvalitlavyvtvdennildakkafvslalfnilrlplnilpmvisslvqasvslkrlriflsqeelepdsi..errsikdgegnsitvknatftward 649
                 l+++a+p  +  li +v+  +  a +     y +++    l  ++   q f   ++ g r+++ +   v  kal     +  ss+vge+ nl++vda+ +  +++    +     q++l+l +l+  lgp+ + gv+v v+ +p+navv  ++k  q + mk kd+r+ +++e l  i+ +kl+ we  f++ +   r +el  l++   laa+++  w+c+p + al+++ v   +  ++i  a + f sl+lf++l + l +lp v+ + +qa v l+r+  fl+  e++  +   e   ++ g    + v +atf w  +
  MMETSP1137-20121227|4105_1 378 LMVYAAPIGMLRLISYVDAYEggAVSASAVGYGCMVAFGPLCSSIGDAQTFNNGWMMGTRMRAFLTHSVSAKALRYDP-CCSSSSVGELTNLLAVDANNITIFTPAASWVVLEGAQLLLTLAMLFYILGPAAVGGVCVCVVTLPVNAVVMRRIKRLQDRLMKEKDARMAVVSETLAAIRTIKLHGWEAQFEKAIGDRRAKELSTLRTFQRLAAITSTLWLCAPSMAALASFLVKNAIFGQDI-SASQGFTSLTLFQLLSVSLTVLPNVLNQAIQAKVGLNRITRFLALPEVDGRTQppETTRLSIG---EVEVIDATFCWNAE 695
                 56666665555566666654411334444445555555666667777889999999*****************98765.567899**************9999999999999999***************************************************************************************************************************9998.68899*******************************************987651155555555...5778899****765 PP

  == domain 2    score: 668.1 bits;  conditional E-value: 9.2e-203
   TIGR00957  652 ptlngltlsipegalvavvgqvgcgkssllsallaemdkvegkvalkgsvayvpqqawiqndslrenilfgkaleekyykavleacalladleilpsgdrteigekgvnlsggqkqrvslaravysdadiyllddplsavdahvakhifekvigpkgllknktrilvthgisy.lpqvdviivls.dgkisemgsyqe.....lldrdgafaeflrtyasaedeldaeddgvasvsaedkeaklvedgllvtdvvgkqlqrqlsasssdsedtsrhlsssaelqkaeakeetwklmeadkaqigqvklsvywdyakaiglfitllsillflcnsvsala..snywlslwtddavvdgtqentklrlsvyaalgilqgiavlgysmavsiggilasrvlhldllhnvlrspmsffertpsgnlvnrfskeldvvdsvlaevikmllgslfnvigavivillatp......laaviilplallyflvqrfyvassrqlkrlesvsrspvyshfnetllgvsvirafeeqerfiiqsdlkvdenqkayypsivanrwlavrlelvgncivlfaalfavisrsslsaglvglsvsyslqvtaylnwlvrmsseletnivaverlkeysetekeapwqieetappsswpksgrvefrnyslryredldlvlrdlnvtieggekvgivgrtgagkssltlglfrinesaegeiiidglniakiglhdlrfkltiipqdpvlfsgslrmnldpfsq...ysdeevwlalelahlkdfvsalpdkldfecaeggenlsvgqrqlvclarallrktkilvldeataavdletdnliqstirtqf.edctvltiahrlntimdytrvlvldkgevaefdapsell.qqrgifysmakdag 1521
                   tl+g++ls+  g lv vvg+ gcgkssllsall+++ +v g va++g+v+y pq+aw+ n++lrenilfg a++e++y+av+ acal +d+ +lp+gdrteigekgvnlsggq+qr+ lara y+++di lldd lsavdahv++hi+++ i  +g+l+++tr+lvth+++  lp++  ++v++ +g i+ + + ++      + r  + a  l + a++ ++l a +  +a+ sa d    +v d+    ++        l++++++ +d ++  +  +   + +a    +++++++  + g  k   y  y++a g  + ++  +l +c s sal+    + l +w +     g +   ++ l +y + g     + l+  + +    + asr lh ++ h+vlr+   +fe tp g+++nrfs ++ ++d+ +a   k  l   +nv++  +v  l +       l+a  +   a   + v  fy + +r+lkrles+++sp+++ f+et++g++v+raf  ++rf+  +  +vd+ ++a +    +n+wl v +++vg  +        +    +l+ g  gl++sy+ q t ++ w+ r+ ++le  +  ver++e+s+      +  +++ p   wp    + f   +++y      v++ l+ ++    + g+vgrtgagkssl+++lfr+ e + g+i+i g++ a + l  lr++++ii q+p lf g+lr nl p  +    +de +w al  a l+  v a+p +ld+  +egg nls g+rqlvc++rall+++ il++deata+vd etd  iq  +r++f  + t+lt+ahrl t+m y rvlvl  g v e+dap  ll +q g++ ++a ++g
  MMETSP1137-20121227|4105_1  746 YTLRGIELSVSPGELVLVVGPTGCGKSSLLSALLGDVPRVAGAVAMRGTVSYCPQKAWVCNTTLRENILFGSAFDESRYNAVIAACALGPDIAMLPAGDRTEIGEKGVNLSGGQQQRLNLARACYAHTDIVLLDDVLSAVDAHVGQHIYNECI--HGFLASRTRVLVTHSVALtLPRASKVVVMTkGGGIAAVAPPNAddepiRMLRATSGASALPSPAPSANDLVAAEAEAAAPSAVD--NVQVADARNAENARRAS---MLAKAAAKVKDCGEGEGGRDGTSNEGAGGRAGRIIKKEERARGAAKYHTYLSYLRAAGG-LRFAFFFLCVCLSFSALSplQSVALKMWVHSMSPGGGD--ETVPLVLYVCAGTAFISMTLLRNLLLPSASVAASRKLHASMTHSVLRARIGWFEATPLGRILNRFSSDVSAIDQQVATQFKDTLVITLNVLAIAVVCTLGSGeaasqlLVAAAVAVAAAASYAVYCFYRTPARELKRLESLTKSPLFAFFAETVTGAAVVRAFGAERRFVATAAARVDDANRALFYLWHTNQWLRVSMNMVGSLVTGSVVASVLWEAGTLKGGDAGLTLSYATQFTQAVMWFFRIITQLEVSMNDVERVNEFSHRLPLEAY-DQGAEPNAEWPSDPTITFESVCMKYPTASAPVFNSLTFSVPAFTRCGVVGRTGAGKSSLAVALFRVVELSSGKIVIGGVDHACVPLQTLRSRMSIIQQEPTLFRGTLRYNLMPVESgepLADELLWAALRRAGLEVKVRAMPLGLDHVLSEGGGNLSAGERQLVCMTRALLKRASILLMDEATASVDHETDARIQDMLRSDFcGNTTILTVAHRLHTVMFYERVLVLGAGAVLEHDAPHALLtKQNGVLRGLAEESG 1624
                  39*****************************************************************************************************************************************************99..7***************9659**99999987357898887654312222456788888888888888888777776555555544..45556655544443333...34555566667777777777777778888899************************996.579999***********844578999999865444444..45778888888998888999999**********************************************************9999999*9998888765443111111233333333444567999****************************************************************************98876555555567789********************************************87654444.48999************************************************************************************************************98744478********************************************************************************955789*******************************99883578*****999887 PP

>> TIGR01271  CFTR_protein: cystic fibrosis transmembrane conductor regulator (CFTR)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  192.3   0.0   3.3e-59   2.1e-57     150     623 ..     435     930 ..     431     934 .. 0.84
   2 !  226.0   0.0   2.2e-69   1.4e-67     929    1443 ..    1102    1613 ..    1095    1626 .. 0.87

  Alignments for each domain:
  == domain 1    score: 192.3 bits;  conditional E-value: 3.3e-59
   TIGR01271 150 gmqlrialfsliykktlklssrvldkistgqlvsllsnnlnkldeglalahfvwiaplqvvllvgliwelleasafcglgflillalvqallgkkmmkyrdkragkiserlaitseiieniqsvkaycweeamekiienirqvelkltrkvayvryfsssafffsgllvvvlsvv.pya.likgiilrrifttisycivlrmtvtrqlpsaiqtwydslgairkiedflqkeeykvl.....eynltttevelvnvtaswdegigel..fek...vkqenkerkta...ngddglffsnlsly....vtp....vlknislklekgqllavagstgsgkssllmmilgelepsegkikhsgrisfspqvswimpgtikdniifglsydeyrytsvikacqleediallaekdktvlgeggitlsggqrarislaravykdadlylldspfsyldvvtekeifesclckllanktrilvtskle.hlkkadkilllheg 623
                 g ++r  l   +  k l+         s+g+l  ll+ + n +      a +v +   q++l + +++ +l  +a  g+++ ++   v+a++ +++ + +d+     + r+a+ se +  i+++k ++we  +ek i + r +el+  r    +  ++s+ ++ +  +  + s +   a + + i   + ft+++   +l +++t  lp+ ++   ++   +++i  fl   e            l+  eve+++ t  w+    +    +    +   +++ + +      + l+ s++        tp     l+ i+l +  g+l+ v g tg+gkssll  +lg++    g +   g +s++pq +w+   t+++ni+fg ++de ry++vi ac l  dia+l+  d+t +ge g+ lsggq+ r++lara y  +d+ lld  +s +d    ++i+++c+  +la++tr+lvt  +   l +a k++++ +g
  MMETSP1137-20121227|4105_1 435 GTRMRAFLTHSVSAKALRYDP-CCSSSSVGELTNLLAVDANNITIFTPAASWVVLEGAQLLLTLAMLFYILGPAAVGGVCVCVVTLPVNAVVMRRIKRLQDRLMKEKDARMAVVSETLAAIRTIKLHGWEAQFEKAIGDRRAKELSTLRTFQRLAAITSTLWLCAPSMAALASFLvKNAiFGQDISASQGFTSLTLFQLLSVSLTV-LPNVLNQAIQAKVGLNRITRFLALPEVDGRtqppeTTRLSIGEVEVIDATFCWNAERENDarADGaapADGAQSAAGASsaqHATSPLLASEIRTTdasdETPrphyTLRGIELSVSPGELVLVVGPTGCGKSSLLSALLGDVPRVAGAVAMRGTVSYCPQKAWVCNTTLRENILFGSAFDESRYNAVIAACALGPDIAMLPAGDRTEIGEKGVNLSGGQQQRLNLARACYAHTDIVLLDDVLSAVDAHVGQHIYNECIHGFLASRTRVLVTHSVAlTLPRASKVVVMTKG 930
                 555666666666666666544.3456799****************************************************999999***************************************************************************9998888777754155525688999***************9995.899999999999999*******98887543112213567888***********85433220122200022222222222000333446666664331111466445569*******************************************************************************************************************************************************************77653799*****999887 PP

  == domain 2    score: 226.0 bits;  conditional E-value: 2.2e-69
   TIGR01271  929 yiyvgvadsllalgflrglplvhtlltvskrlhkkmlhsvlqapmavlntlkagrilnrfskdiaiiddllpltlfdliqlllivlgaiavvsvl.....qpyilv.aaipvavifivlrayflrt.sqqlkqlesearspifshliislkglwtvrafgrqsyfetlfhkalnlhtanwflylstlrwfqlridiifvlffiavvfiai.atndegegevgiiltlamnilstlqwavnssidvdglmrsvsrvfkfid.lpqeeskpkkstkkyqlskvlvienkhvkkiwpsggqmtvkdltakyteagravlqdlsfsveagqrvgllgrtgsgkstllsallrlls.tegeiqidgvswnsvtlqkwrkafgvipqkvfilsgtfrknldpyeq...ysdeeiwkvaeevglksvieqfpdkldfvlvdggyvlsnghkqlmclarsilskakillldepsafldpvtlqiirktlkqafsnctvil.sehrveallecqqflviegssvkqydsiqkllneas 1443
                   +yv+   +++++ +lr l l  + ++ s++lh  m hsvl+a +  ++    grilnrfs d++ id+ +     d + ++l vl aiavv+ l        +lv aa+ va +       f rt +++lk+les ++sp+f+ +  ++ g   vrafg +  f +     ++      f+   t +w+++ ++++  l   +vv   +  +   + g+ g+ l+ a + + ++ w      +++  m  v+rv  f   lp e     ++++               + +wps+  +t +++ +ky  a   v++ l+fsv a  r g++grtg+gks+l  al+r+++ + g+i i gv    v lq+ r  + +i q   ++ gt+r nl p e     +de +w      gl   +  +p  ld vl +gg  ls g +ql+c++r++l +a ill+de +a +d  t   i+  l+  f+  t il   hr+ +++  ++ lv+    v ++d+   ll+++ 
  MMETSP1137-20121227|4105_1 1102 VLYVCAGTAFISMTLLRNLLLPSASVAASRKLHASMTHSVLRARIGWFEATPLGRILNRFSSDVSAIDQQVATQFKDTLVITLNVL-AIAVVCTLgsgeaASQLLVaAAVAVAAAASYAVYCFYRTpARELKRLESLTKSPLFAFFAETVTGAAVVRAFGAERRFVATAAARVDDANRALFYLWHTNQWLRVSMNMVGSLVTGSVVASVLwEAGTLKGGDAGLTLSYATQFTQAVMWFFRIITQLEVSMNDVERVNEFSHrLPLEAY--DQGAE--------------PNAEWPSDPTITFESVCMKYPTASAPVFNSLTFSVPAFTRCGVVGRTGAGKSSLAVALFRVVElSSGKIVIGGVDHACVPLQTLRSRMSIIQQEPTLFRGTLRYNLMPVESgepLADELLWAALRRAGLEVKVRAMPLGLDHVLSEGGGNLSAGERQLVCMTRALLKRASILLMDEATASVDHETDARIQDMLRSDFCGNTTILtVAHRLHTVMFYERVLVLGAGAVLEHDAPHALLTKQN 1613
                  57999999****************************************************************99999998888877.7777777733322223444145566555544444577774689******************************99988776666666555566777799***********9998776665444145566889******************99999999999*********9753888822..22222..............2468********************************************************998468******************************************97533389*********************************************************************************8666666268*************************999999765 PP

>> TIGR03375  type_I_sec_LssB: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.1   0.4   1.6e-08   1.1e-06     216     478 ..     434     695 ..     432     702 .. 0.74
   2 !   96.2   0.0     5e-30   3.2e-28     480     678 ..     745     931 ..     723     941 .. 0.93
   3 !  172.9   0.0   3.1e-53     2e-51     327     692 ..    1244    1612 ..    1113    1615 .. 0.76

  Alignments for each domain:
  == domain 1    score: 25.1 bits;  conditional E-value: 1.6e-08
   TIGR03375 216 agkkvdlilsaklfervlglrlearpasvGsfasqlr.efesvrdfltsatltalvDLpfvllfllvialiggplvlvplvavplvllvglllqkplsklaeeslresaqknallveslegletikalnaesrlqkkWeqvvaalakvslklrllsalltnlaalvqqlvsvavvvvGvyliaegeltmGgLiAaviLsgRalaPlaqlaglltryqqaktalesldelmklpvereeekrllsreklk.GeielknvsfkYpee 478
                 +g ++   l +++ +++l+ +    ++svG +++ l  + +++  ++t a+   +   + +ll l+++++i gp ++  + ++++ l v+ ++ +++++l  + ++e  ++ a++ e+l+++ tik+ + e++++k   +  a+  ++    ++l+a++++l  ++  ++ +a  +v   +i  ++++         L +    +l+ l ++l +  qak+ l+++ ++++lp+  + +++  ++++l+ Ge+e+ + +f ++ e
  MMETSP1137-20121227|4105_1 434 MGTRMRAFLTHSVSAKALRYDPCCSSSSVGELTNLLAvDANNIT-IFTPAASWVVLEGAQLLLTLAMLFYILGPAAVGGVCVCVVTLPVNAVVMRRIKRLQDRLMKEKDARMAVVSETLAAIRTIKLHGWEAQFEKAIGDRRAKELSTLRTFQRLAAITSTLWLCAPSMAALASFLVK-NAIFGQDISASQGFTSLTLFQLLSVSLTVLPNVLNQAIQAKVGLNRITRFLALPEV-DGRTQPPETTRLSiGEVEVIDATFCWNAE 695
                 66677777777777888888888888888888888863555555.445444455555667889999999999***************************************************************9998777766666666777777777766666666666555443.35555666655444444455555567888888888888888888888888888855.55555555555544888888888887655 PP

  == domain 2    score: 96.2 bits;  conditional E-value: 5e-30
   TIGR03375 480 kaaLknvslkikpGekvaiiGriGsGKstllklllglyepteGsvlldgvdirqidpadlrrnigyvpqdvtLfyGtlrdNialgapaaedeellraaelaGvtefvkkhpkGldlqigerGesLSgGQrqavalaRallkdppillLDEPtsalDnsseekller.LkelladkTlvlvtHrtsl.LelvdriivldkGr 678
                 + +L+ ++l+++pGe v ++G +G+GKs+ll  llg +   +G+v              +r +++y pq+++  + tlr+Ni +g++ +++++  +++ +  +   ++  p+G  + ige+G +LSgGQ+q + laRa + +++i+lLD+  sa+D++  +++ ++ ++ +la +T vlvtH  +l L  + +++v++kG 
  MMETSP1137-20121227|4105_1 745 HYTLRGIELSVSPGELVLVVGPTGCGKSSLLSALLGDVPRVAGAVA-------------MRGTVSYCPQKAWVCNTTLRENILFGSA-FDESRYNAVIAACALGPDIAMLPAGDRTEIGEKGVNLSGGQQQRLNLARACYAHTDIVLLDDVLSAVDAHVGQHIYNEcIHGFLASRTRVLVTHSVALtLPRASKVVVMTKGG 931
                 56899**************************************996.............5889**********************98.899999999999999********************************************************99998653889999**********9977999*******9984 PP

  == domain 3    score: 172.9 bits;  conditional E-value: 3.1e-53
   TIGR03375  327 allveslegletikalnaesrlqkkWeqvvaalakvslklrllsalltnlaalvqqlvsvavvvvGvyliaegeltmGgLiAaviLsgRalaPlaqlaglltryqqaktalesldelmk.lpvereeekrlls.reklkGeielknvsfkYpeeekaaLknvslkikpGekvaiiGriGsGKstllklllglyepteGsvlldgvdirqidpadlrrnigyvpqdvtLfyGtlrdNialgap..aaedeellraaelaGvtefvkkhpkGldlqigerGesLSgGQrqavalaRallkdppillLDEPtsalDnsseekllerLkella.dkTlvlvtHrtslLelvdriivldkGrivadGpkdevleal 692 
                  a+  e+++g   ++a +ae+r+ +     v    ++   l ++++ l  + ++v  lv+  vv   + l  +g+l  G    +   ++     ++ +  ++t+++ + + +e+++e+ + lp e  ++ +  + +     +i +++v +kYp ++ ++ +++++++ +  + +++Gr+G+GKs+l+  l +++e ++G++++ gvd   +  ++lr+++++++q++tLf Gtlr N++  ++   + de l +a+++aG++  v+  p Gld+ ++e+G +LS G rq+v ++Rallk  +ill+DE t+++D+++++++ + L++    ++T++ v+Hr + +   +r++vl  G ++  ++ +++l+++
  MMETSP1137-20121227|4105_1 1244 AFFAETVTGAAVVRAFGAERRFVATAAARVDDANRALFYLWHTNQWLRVSMNMVGSLVTGSVVA--SVLWEAGTLKGGDAGLTLSYATQFTQAVMWFFRIITQLEVSMNDVERVNEFSHrLPLEAYDQGAEPNaEWPSDPTITFESVCMKYPTASAPVFNSLTFSVPAFTRCGVVGRTGAGKSSLAVALFRVVELSSGKIVIGGVDHACVPLQTLRSRMSIIQQEPTLFRGTLRYNLMPVESgePLADELLWAALRRAGLEVKVRAMPLGLDHVLSEGGGNLSAGERQLVCMTRALLKRASILLMDEATASVDHETDARIQDMLRSDFCgNTTILTVAHRLHTVMFYERVLVLGAGAVLEHDAPHALLTKQ 1612
                  5566666666666666666666655554444444444444444444444434443333333222..223345555544433333345566666667777778888888888888887542677776555444404456779************************************************************************************************8665433689*****************************************************************************9876637788889**********************999999888876 PP

>> TIGR02203  MsbA_lipidA: lipid A export permease/ATP-binding protein MsbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   0.3   3.9e-07   2.5e-05     108     335 ..     459     686 ..     433     701 .. 0.65
   2 !   84.9   0.0   1.5e-26   9.8e-25     346     544 ..     745     930 ..     715     935 .. 0.92
   3 !  189.9   0.1   2.3e-58   1.5e-56      74     564 ..    1117    1618 ..    1096    1623 .. 0.82

  Alignments for each domain:
  == domain 1    score: 20.8 bits;  conditional E-value: 3.9e-07
   TIGR02203 108 kessgsllsrltfdseqvvsaatdvlkvlvretltvigllivllylsWqltl....ivvvllPvlallvrvvskrlrkiskeiqnsigeltkvveealqgyrvvklfggqeaeakRfdavsnrlrrlalkvasasslssplvqliasvalavvllialvqaqagaltvGelvafitamlalikplksLtnvsaklqkglaaaesvfallDsppekdeGtralervr...Gkvefr 335
                  +s+g+l + l +d+++++   t +   +v e+++++  l++l+y+    ++    + vv lPv a+++r+++    +++    +     + vv+e+l   r +kl+g +++ +k  +    +    +l+  +  ++ ++ + l+a +  a+  +++      + +++ +  + +t   +l  +l  L nv ++  +  ++ +++  +l   pe+d  t+ +e  r   G+ve+ 
  MMETSP1137-20121227|4105_1 459 SSSVGELTNLLAVDANNITI-FTPAASWVVLEGAQLLLTLAMLFYILGPAAVggvcVCVVTLPVNAVVMRRIK----RLQDRLMKEKDARMAVVSETLAAIRTIKLHGWEAQFEKAIGDRRAK-ELSTLRTFQRLAAITSTLWLCAPSMAALASFLVKNAIFGQDISASQGFTSLTLFQLLSVSLTVLPNVLNQAIQAKVGLNRITRFLAL-PEVDGRTQPPETTRlsiGEVEVI 686
                 45678888888888888765.56777888999*************9766554222267778888888887665....5555555555666789***************999877766654333.334566666667777777777754333333333333333333444333445556677778888988877766667788888888754.56666665555443222555544 PP

  == domain 2    score: 84.9 bits;  conditional E-value: 1.5e-26
   TIGR02203 346 realdsislkveaGevvalvGrsGsGkstlvnllpRFyepdsGeillDgvdladlkLasLRrqvalvsqdvvLFddtiaenvaYgeleevdeaeveealaaaylkdlvdklpeGldtevGengskLsGGqRqRlaiaRallkdaPiLiLDeatsaLDneseRlv.qaaLerlmkgRttlviahRLs.tiekaDrivvlddG 544
                   +l++i+l+v++Ge v +vG+ G Gks+l++ l   +   +G +              +R  v++  q+  + + t+ en+ +g+    de + ++++aa  l   +  lp G  te+Ge+g++LsGGq qRl +aRa +  + i++LD+  sa+D+    ++  + ++ ++  Rt +++ h ++ t+ +a ++vv+ +G
  MMETSP1137-20121227|4105_1 745 HYTLRGIELSVSPGELVLVVGPTGCGKSSLLSALLGDVPRVAGAVA-------------MRGTVSYCPQKAWVCNTTLRENILFGSA--FDESRYNAVIAACALGPDIAMLPAGDRTEIGEKGVNLSGGQQQRLNLARACYAHTDIVLLDDVLSAVDAHVGQHIyNECIHGFLASRTRVLVTHSVAlTLPRASKVVVMTKG 930
                 5689**************************9998888888888775.............5778**********************98..89999999999999999******************************************************99993468999************99769**********998 PP

  == domain 3    score: 189.9 bits;  conditional E-value: 2.3e-58
   TIGR02203   74 vsdyllakvsnkvvrdlRkklfeklltlpsayfdkessgsllsrltfdseqvvsaatdvlkvlvretltvigllivllylsWqlt..livvvllPvlallvrvvskrlrkiskeiqn....sigeltkvveealqgyrvvklfggqeaeakRfdavsnrlrrlalk....vasasslssplvqliasvalavvllialvqaqagaltvGelvafitamlalikplksLtnvsaklqkglaaaesvfallDspp.e.kdeGtraler..vrGkvefrnvtfrypgddrealdsislkveaGevvalvGrsGsGkstlvnllpRFyepdsGeillDgvdladlkLasLRrqvalvsqdvvLFddtiaenvaYgel.eevdeaeveealaaaylkdlvdklpeGldtevGengskLsGGqRqRlaiaRallkdaPiLiLDeatsaLDneseRlvqaaLerlmkgRtt.lviahRLstiekaDrivvlddGkiverG.theeLlarnGlYas 564 
                  + ++ll  +s+   r+l  ++ + +l++    f+ ++ g++l+r+ +d+  + ++++  +k  +  tl v+++ +v    s + +  l+v++ + v a ++ +v   +r   +e ++    + + l    +e++ g  vv+ fg++     Rf a +   ++ a +    + +++      +++++s+  + v++ +l++a  g+l  G+    ++ ++++++++     + ++l   +   e+v ++  + p e  d+G     +     ++ f++v ++yp +++++++s+ ++v a ++  +vGr G+Gks+l+  l R +e +sG+i++ gvd a + L++LR++++++ q+ +LF +t+  n+   e  e + ++ + +al+ a l+  v ++p Gld  + e g++Ls G Rq + + Rallk a iL++Deat+++D e + ++q+ L     g tt l +ahRL t+   +r++vl +G ++e+  +h  L ++nG+   
  MMETSP1137-20121227|4105_1 1117 LRNLLLPSASVAASRKLHASMTHSVLRARIGWFEATPLGRILNRFSSDVSAIDQQVATQFKDTLVITLNVLAIAVVCTLGSGEAAsqLLVAAAVAVAAAASYAVYCFYRTPARELKRleslTKSPLFAFFAETVTGAAVVRAFGAER----RFVATAAARVDDANRalfyLWHTNQWLRVSMNMVGSLVTGSVVASVLWEA--GTLKGGDAGLTLSYATQFTQAVMWFFRIITQLEVSMNDVERVNEFSHRLPlEaYDQGAEPNAEwpSDPTITFESVCMKYPTASAPVFNSLTFSVPAFTRCGVVGRTGAGKSSLAVALFRVVELSSGKIVIGGVDHACVPLQTLRSRMSIIQQEPTLFRGTLRYNLMPVESgEPLADELLWAALRRAGLEVKVRAMPLGLDHVLSEGGGNLSAGERQLVCMTRALLKRASILLMDEATASVDHETDARIQDMLRSDFCGNTTiLTVAHRLHTVMFYERVLVLGAGAVLEHDaPHALLTKQNGVLRG 1618
                  55778889999999**************************************999999998888889999999888877776544115555555555555555555555555554431111566788889**************975....44443333333333311115677888888889999999999998888876..566688888888889999999999999999999999999999998877542426999988887667889***********************************************************************************************99888735677888899***********************************************************************876666555268************************96267777789998655 PP

>> TIGR02868  CydC: thiol reductant ABC exporter, CydC subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.2      0.46        29     255     298 ..      34      78 ..       4     122 .. 0.67
   2 ?   -0.0   2.1      0.86        55      15      67 ..     252     306 ..     249     308 .. 0.92
   3 !   14.9   3.9   2.7e-05    0.0017     131     344 ..     479     692 ..     456     703 .. 0.75
   4 !  123.2   0.0   4.1e-38   2.6e-36     295     529 ..     690     913 ..     676     914 .. 0.88
   5 !  170.2   5.5   2.3e-52   1.5e-50      88     530 .]    1133    1582 ..    1103    1582 .. 0.81

  Alignments for each domain:
  == domain 1    score: 0.9 bits;  conditional E-value: 0.46
   TIGR02868 255 allvgveavadgrlapvalAvlvLlpLaafe.alaalpaAaqqlt 298
                 +ll+ +   ++g+l    +Av+ L +L+a + a+ a+ aA+++l 
  MMETSP1137-20121227|4105_1  34 QLLATGFRASNGQLVSNSMAVFQLPALSAEDtAFPAVVAALVALM 78 
                 444444444888888888888888888888723334444444443 PP

  == domain 2    score: -0.0 bits;  conditional E-value: 0.86
   TIGR02868  15 lalavllgvlalgsavaLlavsawL..israaeqPpvlylsvavvavRafgisra 67 
                 +++av ++v+al  a aL av+a    +  a+  P++lyl+   +a R+  i r+
  MMETSP1137-20121227|4105_1 252 VVVAVGFAVVALRGAPALEAVAAPVppMRPAWLLPKLLYLYWFTAAARFAKIDRS 306
                 7899*******************9866889********************99996 PP

  == domain 3    score: 14.9 bits;  conditional E-value: 2.7e-05
   TIGR02868 131 ivPlvvAlvvalaa.valiallsvaaalvlaaallvalvvapl...vslraarsaeqalarlrselaaqlldllegaaelvvaGaleavlaqveeaereltraekraaaaealgaaltllaaGlavllallvgveavadgrlapvalAvlvLlpLaafealaalpaAaqqltrvraaaeRieevldakvevaeasapaaeaaasekptlelrdlsvsy 344
                  +P+++ +v+  a   + +a+l+  ++ +++ ++ v +v +p+   v +r++r  +++l +++ +  a + ++l++  +++  G  +++ +++ ++ ++ +   +  ++++a+++ l l a  +a+l++ lv ++   ++  a + ++ l L +L  +  l++lp++++q  +++  ++Ri+  l+ + ev+  ++p + +  s   ++e+ d ++ +
  MMETSP1137-20121227|4105_1 479 FTPAASWVVLEGAQlLLTLAMLFYILGPAAVGGVCVCVVTLPVnavVMRRIKR-LQDRLMKEKDARMAVVSETLAAIRTIKLHGWEAQFEKAIGDRRAKELSTLRTFQRLAAITSTLWLCAPSMAALASFLVKNAIFGQDISASQGFTSLTLFQLLSV-SLTVLPNVLNQAIQAKVGLNRITRFLALP-EVDGRTQPPETTRLS-IGEVEVIDATFCW 692
                 56777777775554145567777777777777777777766641103333333.345555666677788999************************99999999999************************999777777788889999999998655.5789*******************999888.444444444433333.3455555555555 PP

  == domain 4    score: 123.2 bits;  conditional E-value: 4.1e-38
   TIGR02868 295 qqltrvraaaeRieevldakvevae..asapaaeaaasekptlelrdlsvsypgaeevlkgvsldlepGervavvGasGaGKstLlallaglldplkGevtldgvsvaslsesevrrvvsvlaqdaHlFdttvreNlrlarpdatdeellaaLervgLadwlraLpdGldtklgeggarlSGGerqRlalARaLladapvllLDEPtehLDaeteeelledLl.aaeegrtvvlvthr 529
                   +++ r+  +R +++++a + + +  as+++ ++++  + ++++ d s + p  +  l+g++l ++pGe v vvG++G+GKs Ll++l+g ++  +G v++ g             +vs+++q+a + +tt+reN++++ +  ++    a++++  L+  ++ Lp G  t++ge+g  lSGG++qRl lARa  a+ +++lLD     +Da++++++ ++ +   +++rt vlvth+
  MMETSP1137-20121227|4105_1 690 FCWNAERENDARADGAAPADGAQSAagASSAQHATSPLLASEIRTTDASDETPRPHYTLRGIELSVSPGELVLVVGPTGCGKSSLLSALLGDVPRVAGAVAMRG-------------TVSYCPQKAWVCNTTLRENILFGSA-FDESRYNAVIAACALGPDIAMLPAGDRTEIGEKGVNLSGGQQQRLNLARACYAHTDIVLLDDVLSAVDAHVGQHIYNECIhGFLASRTRVLVTHS 913
                 557777888888888888874443300344444455557889999999999999999********************************************999.............8*********************974.57777889999*****************************************************************998857799*********7 PP

  == domain 5    score: 170.2 bits;  conditional E-value: 2.3e-52
   TIGR02868   88 lRvrvYerLaraalallarlrrGdlLarlvaDvdalqdllvRvivPlvvAlvvalaavaliallsvaaalvlaaallvalvva.plvslraarsaeqalarl....rselaaqlldllegaaelvvaGaleavla....qveeaereltraekraaaaealgaaltllaaGlavllallvgveavadgrlapvalAvlvLlpLaafealaalpaAaqqltrvraaaeRieevldakvevaeasapaaeaaasekptlelrdlsvsypgaee.vlkgvsldlepGervavvGasGaGKstLlallaglldplkGevtldgvsvaslsesevrrvvsvlaqdaHlFdttvreNlrlarpda..tdeellaaLervgLadwlraLpdGldtklgeggarlSGGerqRlalARaLladapvllLDEPtehLDaeteeelledLlaaeegrt.vvlvthrl 530 
                  l + + +++ ra+  + ++   G +L+r+++Dv a+++ +       +v  + +la+ ++ +l s +aa  l++a++va+++a + + +   r+ +++l+rl    +s l a  ++++ gaa  +++Ga  +++a    +v++a+r+l  + + +++++   + + +l++G++v+++l+ ++  +++g  a+ +l          ++a++ +   + ql+ + +  eR++e  +  + +a  + ++ +a+ + +pt++++ + ++yp+a++ v++ +++ +++  r  vvG++GaGKs L+ +l+++++ ++G++++ gv+ a +  + +r ++s+++q++ lF  t+r Nl+  +     +de l+aaL+r+gL+  +ra+p Gld +l egg  lS+Gerq + + RaLl+ a +ll+DE t+++D et +++ ++L++   g+t ++ v+hrl
  MMETSP1137-20121227|4105_1 1133 LHASMTHSVLRARIGWFEATPLGRILNRFSSDVSAIDQQVATQFKDTLVITLNVLAIAVVCTLGSGEAASQLLVAAAVAVAAAaSYAVYCFYRTPARELKRLesltKSPLFAFFAETVTGAAVVRAFGAERRFVAtaaaRVDDANRALFYLWHTNQWLRVSMNMVGSLVTGSVVASVLWEAG--TLKGGDAGLTLSYAT----QFTQAVMWFFRIITQLEVSMNDVERVNEFSHRLPLEAYDQGAEPNAEWPSDPTITFESVCMKYPTASApVFNSLTFSVPAFTRCGVVGRTGAGKSSLAVALFRVVELSSGKIVIGGVDHACVPLQTLRSRMSIIQQEPTLFRGTLRYNLMPVESGEplADELLWAALRRAGLEVKVRAMPLGLDHVLSEGGGNLSAGERQLVCMTRALLKRASILLMDEATASVDHETDARIQDMLRSDFCGNTtILTVAHRL 1582
                  5556666777888888889999**************988777666655554444444444444455666666666666555440445555666666666665111155666677899************99988621115677777888888888888888889999************999..678888998888644....445666666677777777888888888888888777777788888888899***************999********************************************************************************95544333589999*********************************************************************999996666655267788875 PP

>> TIGR02204  MsbA_rel: ABC transporter, permease/ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.3   0.3   3.9e-08   2.5e-06      69     351 ..     418     696 ..     407     704 .. 0.77
   2 !  100.0   0.1   4.3e-31   2.8e-29     351     550 ..     744     930 ..     714     937 .. 0.88
   3 !  159.4   1.8   4.5e-49   2.9e-47      89     572 ..    1129    1620 ..    1052    1622 .. 0.81

  Alignments for each domain:
  == domain 1    score: 24.3 bits;  conditional E-value: 3.9e-08
   TIGR02204  69 lvlalatalrfylvsslGervvadlrkavfahllelspaffdknrsgevlsrltadttllksvvGaslsialrnlllliGalamlvitsvkltslvllavPlvllPil.lfgrrvrklsresqdrladasayagealeaiktvqayaseeaersrfdaavekayeaarkrikaralliavvivlvfgavvlvlWvGar.dvlagklsaGe.LaqfvlyavlvagslgalsevlgelqraaGaaerliellkaksdikaPaqpkalpakvrgeiefeevkfayParp 351
                 l+ +++ a  f    ++G r+ a l ++v a+ l+ +p    + + ge+   l+ d++ +     a+  + l     l+ +laml+++    +++  + v +v lP+  ++ rr+++l  +   +  +  a ++e+l+ai+t++ ++ e++ +++ + +  +a e ++ r+ +r   i++ + l   +++++  + ++  ++ +++sa + ++ + l+ +l + sl+ l +vl++  +a  + +r++ +l   ++++  +qp + +    ge+e+ + +f + a  
  MMETSP1137-20121227|4105_1 418 LCSSIGDAQTFNNGWMMGTRMRAFLTHSVSAKALRYDPCC-SSSSVGELTNLLAVDANNITIFTPAASWVVLE-GAQLLLTLAMLFYILGP-AAVGGVCVCVVTLPVNaVVMRRIKRLQDRLMKEKDARMAVVSETLAAIRTIKLHGWEAQFEKAIGDR--RAKELSTLRTFQRLAAITSTLWLCAPSMAALASFLVKnAIFGQDISASQgFTSLTLFQLL-SVSLTVLPNVLNQAIQAKVGLNRITRFLA-LPEVDGRTQPPETTRLSIGEVEVIDATFCWNAER 696
                 56677778888888899*******************9986.67789*************98776666555555.55555677777765332.3344455666777775145688888776666666677899*****************9988888776..577788899999999999999999999988876655505667789998735666666665.6799**********************996.5788888888888888889999888888776655 PP

  == domain 2    score: 100.0 bits;  conditional E-value: 4.3e-31
   TIGR02204 351 pdqkaldgldltvrpGetvalvGPsGaGkstllelllrfydPqsGailldGvdlreldpeelrerlalvpqdsalfaasvleniryGrpdasdeeveaaakaaeade.fisklpeGydtllGergvtLsGGqkqriaiarailkdapiLLLdeatsaLdaeseqlv.qqaleelmkgrttlviahrLa.tvlkadrivvldkG 550
                 p + +l+g++l+v pGe v +vGP+G Gks ll+ ll       Ga+              +r +++  pq++ +  +  +eni +G   a de  ++a  aa a +  i  lp G  t++Ge+gv+LsGGq+qr+ +ara  + + i+LLd+  sa+da+  q++ ++ ++   + rt +++ h +a t+ +a ++vv+ kG
  MMETSP1137-20121227|4105_1 744 P-HYTLRGIELSVSPGELVLVVGPTGCGKSSLLSALLGDVPRVAGAV-------------AMRGTVSYCPQKAWVCNTTLRENILFGS--AFDESRYNAVIAACALGpDIAMLPAGDRTEIGEKGVNLSGGQQQRLNLARACYAHTDIVLLDDVLSAVDAHVGQHIyNECIHGFLASRTRVLVTHSVAlTLPRASKVVVMTKG 930
                 4.678*****************************9996554445554.............56778999*******************6..67777788888887766369***************************************************9999846799***************987899*********98 PP

  == domain 3    score: 159.4 bits;  conditional E-value: 4.5e-49
   TIGR02204   89 vvadlrkavfahllelspaffdknrsgevlsrltadttllksvvGaslsialrnlllliGalamlvitsvkltslvll..avPlvllP...illfgrr.vrklsresqdrladasayagealeaiktvqayaseeaersrfdaavekayeaarkrikarallia...vvivlvfgavv.lvlWvGardvlagklsaGeLaqfvlyavlvagslgalsevlgelqraaGaaerliellkaksdikaPaqpkalp..akvrgeiefeevkfayParpdqkaldgldltvrpGetvalvGPsGaGkstllelllrfydPqsGailldGvdlreldpeelrerlalvpqdsalfaasvlen...iryGrpdasdeeveaaakaaeadefisklpeGydtllGergvtLsGGqkqriaiarailkdapiLLLdeatsaLdaeseqlvqqaleelmkgrtt.lviahrLatvlkadrivvldkGriveqGt.haeLiakggLyarla 572 
                   +  l  ++ + +l+   ++f+ +  g +l r+++d++ + + v + +   l  +l+++   ++ ++ s   +s +l+  av +  +    + +f r   r+l r    + + + a+ +e+++    v+a++ e++  ++ +a+v++a +a     ++  +l     +v  lv g+vv  vlW       ag+l +G+ +  + ya   ++++  +  ++ +l+ +   +er++e+ +    ++a  q  +     +    i+fe+v ++yP+ +  ++++ l ++v +  +  +vG +GaGks l   l r  + +sG+i ++Gvd + +  + lr+r+++++q+++lf +  + n   +  G+p a de + aa + a  +  ++++p G d  l e g +Ls G +q + + ra+lk a iLL+deat+++d e++ ++q  l +   g tt l +ahrL tv+  +r++vl  G + e+ + ha L +++g+ + la
  MMETSP1137-20121227|4105_1 1129 ASRKLHASMTHSVLRARIGWFEATPLGRILNRFSSDVSAIDQQVATQFKDTLVITLNVLAIAVVCTLGSGEAASQLLVaaAVAVAAAAsyaVYCFYRTpARELKRLESLTKSPLFAFFAETVTGAAVVRAFGAERRFVATAAARVDDANRALFYLWHTNQWLRVsmnMVGSLVTGSVVaSVLW------EAGTLKGGDAGLTLSYATQFTQAVMWFFRIITQLEVSMNDVERVNEFSHRL-PLEAYDQGAEPNaeWPSDPTITFESVCMKYPTAS-APVFNSLTFSVPAFTRCGVVGRTGAGKSSLAVALFRVVELSSGKIVIGGVDHACVPLQTLRSRMSIIQQEPTLFRGTLRYNlmpVESGEPLA-DELLWAALRRAGLEVKVRAMPLGLDHVLSEGGGNLSAGERQLVCMTRALLKRASILLMDEATASVDHETDARIQDMLRSDFCGNTTiLTVAHRLHTVMFYERVLVLGAGAVLEHDApHALLTKQNGVLRGLA 1620
                  455566677788999999****************************998888887777766666666666666555540045444443111333333224455554555555667999*********************************99999999888431113334666665415777......5899******************************************98765.45665555554400567779***********988.9*****************************************************************************99943346777765.778899999999999***************************************************************999988883569**********************98653778888999888777 PP

>> TIGR03797  NHLM_micro_ABC2: NHLM bacteriocin system ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.3   0.4   1.4e-07   8.7e-06     256     464 ..     486     695 ..     458     699 .. 0.89
   2 !   78.7   1.0   1.2e-24   7.7e-23     467     660 ..     746     930 ..     740     935 .. 0.90
   3 !  176.5   1.5   2.9e-54   1.9e-52     150     683 ..    1074    1621 ..    1056    1623 .. 0.82

  Alignments for each domain:
  == domain 1    score: 22.3 bits;  conditional E-value: 1.4e-07
   TIGR03797 256 allssifallnlvlllvyslklalvavllalvaiavtlvlgllqvrkerkllelegklsgltvqlingisKlrvagaeerafaawakefseqrklelkaqriedlltvlnavlpvltsavlfalaisllaaaklslgsflafntafgsflkavtslaetlievlavvplyerakPileaepEvdeekvdpgk..Ls.GaievdrvtFrYekd 464
                  +l +   ll+l++l++     a+ +v +++v++ v +v+  +  r + +l++++ +  +++ + +++i  +++ g e ++  a+  + +++ ++ +++qr++ ++++l    p ++ ++ f +  ++  ++ +s+++  +  t f  ++ ++t l + l +++++    +r+   l a pEvd ++  p++  Ls G++ev   tF+++++
  MMETSP1137-20121227|4105_1 486 VVLEGAQLLLTLAMLFYILGPAAVGGVCVCVVTLPVNAVVMRRIKRLQDRLMKEKDARMAVVSETLAAIRTIKLHGWEAQFEKAIGDRRAKELSTLRTFQRLAAITSTLWLCAPSMAALASFLVKNAI-FGQDISASQGFTSLTLFQLLSVSLTVLPNVLNQAIQAKVGLNRITRFL-ALPEVDGRTQPPETtrLSiGEVEVIDATFCWNAE 695
                 56777778999*****999999999***************99999*********************************************************************99999999888875.7778888888888899*****************************988.68*****99999752254699***9999999876 PP

  == domain 2    score: 78.7 bits;  conditional E-value: 1.2e-24
   TIGR03797 467 lvLddvslkiepGefvaivGaSGsGKStllrlLLgFekPesGsvlyDGqdlekldvqavRrqlGvVLQngrllsgsileniaggasltldeaweaarmagleeDikamPmglhTvisegggtlSGGQrQRlliAralvrkPrillfDEATSALDNrt.QaiVseslekl..kvtRiviAHRLS.TirnadrilvleeG 660
                  +L+ + l+++pGe v +vG+ G+GKS+ll  LLg     +G+v             a+R  +    Q++ +   ++ eni+ g+ +   +  +++   +l  Di  +P g  T i e g +lSGGQ+QRl +Ara   +  i+l+D+  SA+D +  Q+i  e ++ +  + tR+++ H +  T+ +a++++v+ +G
  MMETSP1137-20121227|4105_1 746 YTLRGIELSVSPGELVLVVGPTGCGKSSLLSALLGDVPRVAGAV-------------AMRGTVSYCPQKAWVCNTTLRENILFGSAFDESRYNAVIAACALGPDIAMLPAGDRTEIGEKGVNLSGGQQQRLNLARACYAHTDIVLLDDVLSAVDAHVgQHIYNECIHGFlaSRTRVLVTHSVAlTLPRASKVVVMTKG 930
                 57999******************************544457777.............6777788899*******************9999999999999*******************************************************976378888899886235699*****99779**********998 PP

  == domain 3    score: 176.5 bits;  conditional E-value: 2.9e-54
   TIGR03797  150 llglvvPlatgilldeviPdaerslllqvalallaaalgallfqlaqslavlRletavdaslqaavwdrLLrlpasfFreysagdLasramg.vsqirrllsgatlkallss..ifallnlvlllvysl.klalvavllalvaiavtlvlgllqv...rkerkllelegklsgltvqlingisKlrvagaeerafaawakefseqrklelkaqriedlltvlnavlpvltsavlfalaisll.....aaaklslgsflafntafgsflkavtslaetlievlavvplyerakPileaepEvdeekvdpgkLsGaievdrvtFrYekdgplvLddvslkiepGefvaivGaSGsGKStllrlLLgFekPesGsvlyDGqdlekldvqavRrqlGvVLQngrllsgsilenia...ggasltldeaweaarmagleeDikamPmglhTvisegggtlSGGQrQRlliAralvrkPrillfDEATSALDNrtQaiVseslek...lkvtRiviAHRLSTirnadrilvleeGrvveqGsyeeLla.keGlfaelar 683 
                   l+ +  +a ++ ++++ P +  +++  v  + + +a+   +++l ++l +   + a++ +l+a++   +Lr +  +F +   g +++r ++ vs+i ++++++   +l+ +  ++a+  +  l   ++ +  lva ++a++a+a  +v  ++++   + +r    +++ l+++  + ++g + +r  gae+r+ a+ a +   +++  +   +++++l v  +++  l++  ++a + +       + a+l+l+    f++a+  f + +t+l  ++ +v + v  +++  P+ +  + ++ +   p +   +i+ ++v+ +Y + ++ v++++++++ + +  ++vG  G+GKS+l   L+   + +sG+++  G d + + +q +R ++ ++ Q+  l+ g++  n++   +g++l+ +  w+a+r+agle  ++amP+gl  v+seggg+lS G rQ + + ral ++  ill+DEAT  +D +t a + + l      + t + +AHRL T++  +r+lvl +G v e+   + Ll+ ++G++  la+
  MMETSP1137-20121227|4105_1 1074 ALSPLQSVALKMWVHSMSPGGGDETVPLVLYVCAGTAFI--SMTLLRNLLLPSASVAASRKLHASMTHSVLRARIGWFEATPLGRILNRFSSdVSAIDQQVATQFKDTLVITlnVLAIAVVCTLGSGEAaSQLLVAAAVAVAAAASYAVYCFYRTparELKRLESLTKSPLFAFFAETVTGAAVVRAFGAERRFVATAAARVDDANRALFYLWHTNQWLRVSMNMVGSLVTGSVVASVLWEAgtlkgGDAGLTLSYATQFTQAVMWFFRIITQLEVSMNDVER-VNEFSHRLPLEAYDQGAEPNAEWPSD--PTITFESVCMKYPTASAPVFNSLTFSVPAFTRCGVVGRTGAGKSSLAVALFRVVELSSGKIVIGGVDHACVPLQTLRSRMSIIQQEPTLFRGTLRYNLMpveSGEPLADELLWAALRRAGLEVKVRAMPLGLDHVLSEGGGNLSAGERQLVCMTRALLKRASILLMDEATASVDHETDARIQDMLRSdfcGNTTILTVAHRLHTVMFYERVLVLGAGAVLEHDAPHALLTkQNGVLRGLAE 1621
                  555555566667777777777777766666666666654..56789*******************************************8655*********99888776441134444444443333312334555555555555555555554111233333445678999*****************************999999888888888888877777777666666666655555666777788888888888888889999999888888765.57888889998888888888888886..67********************************************************************************************9997633367789****************************************************************************99863324789999*************************9999887648999999885 PP

>> TIGR02857  CydD: thiol reductant ABC exporter, CydD subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.6      0.43        28      71     209 ..     434     570 ..     377     630 .. 0.81
   2 !  116.3   0.1     6e-36   3.8e-34     316     528 ..     722     926 ..     693     927 .. 0.82
   3 ?    5.1   2.6     0.031         2      43     209 ..    1099    1269 ..    1062    1294 .. 0.74
   4 !  146.8   0.0   3.5e-45   2.3e-43     313     529 .]    1374    1594 ..    1343    1594 .. 0.87

  Alignments for each domain:
  == domain 1    score: 1.3 bits;  conditional E-value: 0.43
   TIGR02857  71 aaaevksqlrerllekvaalGpavlqkkksgelatlllegvdalddY..farylpqlvlavivplvilaavltadwisal.illltlPlipiFmiLiGsaaqaaarkqlaalsrLsghfldlvrglptLklfgrakaeaaai 209
                 +++++++ l++++ +k+++  p   + ++ gel+ ll+   +++  +   a +++   + ++++l++l+ +l    + ++ + ++tlP+  + m  i +  ++ ++++ a ++ +s+     ++++ t+kl g + +  +ai
  MMETSP1137-20121227|4105_1 434 MGTRMRAFLTHSVSAKALRYDPCCSS-SSVGELTNLLAVDANNITIFtpAASWVVLEGAQLLLTLAMLFYILGPAAVGGVcVCVVTLPVNAVVMRRIKRLQDRLMKEKDARMAVVSET----LAAIRTIKLHGWEAQFEKAI 570
                 56677777888888888888888666.88999999999999999988445889999999999******99997777776626799*********999999999999999999988865....45667777766665555555 PP

  == domain 2    score: 116.3 bits;  conditional E-value: 6e-36
   TIGR02857 316 aaass.....slelenvsvayegrkpalkevsltvepgelvalvGaSGaGKstllklllgfvepteGailvngaelaeldadswrkqiawvpQkPllfegtvaenirlarkdaseaevkealeragldelvkalpqgleteiGergagLSgGqrqRlaLArallrdapllllDEPtahLDaeteaevlea.lrelaegrtvllvaHrlala.eladkivv 528
                 +a  s     +++ ++ s   +  +  l++++l+v+pgelv +vG+ G+GKs+ll++llg v+   Ga+++ g+             +++ pQk++++++t++eni ++++  +e+  ++++ +++l   ++ lp+g  teiGe+g +LSgGq+qRl LAra + + +++llD   +++Da+  ++++++ ++ ++  rt +lv+H+ al+  +a k+vv
  MMETSP1137-20121227|4105_1 722 HAT-SpllasEIRTTDASDETPRPHYTLRGIELSVSPGELVLVVGPTGCGKSSLLSALLGDVPRVAGAVAMRGT-------------VSYCPQKAWVCNTTLRENILFGSA-FDESRYNAVIAACALGPDIAMLPAGDRTEIGEKGVNLSGGQQQRLNLARACYAHTDIVLLDDVLSAVDAHVGQHIYNEcIHGFLASRTRVLVTHSVALTlPRASKVVV 926
                 222.112333566666666666555789**********************************988888887776.............99******************9976.566669999999*************************************************************99765288899**********98864167777776 PP

  == domain 3    score: 5.1 bits;  conditional E-value: 0.031
   TIGR02857   43 lltalaalalvlllRallawlkeaaaaraaaevksqlrerllekvaalGpavlqkkksgelatlllegvdalddYfarylpqlvlavivplvilaavltadwisalillltlPlipi....FmiLiGsaaqaaarkqlaalsr..LsghfldlvrglptLklfgrakaeaaai 209 
                  +   l + a+ ++    +++l++ +   a+++++++l +++ + v++    + + ++ g++       v+a+d+ +a  +   +  ++  l+i+++  + +  +a  ll+++ +       + +   +++ a++ k+l++l++  L ++f++ v g +++++fg++++ +a+ 
  MMETSP1137-20121227|4105_1 1099 VPLVLYVCAGTAF--ISMTLLRNLLLPSASVAASRKLHASMTHSVLRARIGWFEATPLGRILNRFSSDVSAIDQQVATQFKDTLVITLNVLAIAVVCTLGSGEAASQLLVAAAVAVAaaasYAVYCFYRTPARELKRLESLTKspLFAFFAETVTGAAVVRAFGAERRFVATA 1269
                  3333333333333..456788999999**********************************************99887666666666666666666666666666555555443322234467788899999999999999765599******************99865543 PP

  == domain 4    score: 146.8 bits;  conditional E-value: 3.5e-45
   TIGR02857  313 pltaaassslelenvsvayegrk.palkevsltvepgelvalvGaSGaGKstllklllgfvepteGailvngaelaeldadswrkqiawvpQkPllfegtvaenirlarkda..seaevkealeragldelvkalpqgleteiGergagLSgGqrqRlaLArallrdapllllDEPtahLDaeteaevlealre.laegrtvllvaHrlalaeladkivvl 529 
                  ++++ ++ ++++e v ++y+ ++ p+ +++ ++v++ ++ ++vG  GaGKs+l  +l ++ve  +G+i+++g++ a +  +++r++++ ++Q+P+lf gt++ n+   +++   +++ + +al+ragl+  v+a+p gl+  + e+g +LS+G+rq + ++rall+ a++ll+DE ta++D+et+a++++ lr+ ++ + t+l vaHrl+++  +++++vl
  MMETSP1137-20121227|4105_1 1374 NAEWPSDPTITFESVCMKYPTASaPVFNSLTFSVPAFTRCGVVGRTGAGKSSLAVALFRVVELSSGKIVIGGVDHACVPLQTLRSRMSIIQQEPTLFRGTLRYNLMPVESGEplADELLWAALRRAGLEVKVRAMPLGLDHVLSEGGGNLSAGERQLVCMTRALLKRASILLMDEATASVDHETDARIQDMLRSdFCGNTTILTVAHRLHTVMFYERVLVL 1594
                  223333339***********9999********************************************************************************9854443311344499************************************************************************962678999999*********99999876 PP

>> TIGR03796  NHLM_micro_ABC1: NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.2   2.4e-07   1.5e-05     283     489 ..     494     694 ..     461     699 .. 0.68
   2 !   64.9   0.1   1.4e-20   9.1e-19     495     687 ..     748     930 ..     709     935 .. 0.90
   3 !  174.1   0.1   1.3e-53   8.6e-52     174     708 ..    1080    1619 ..    1033    1621 .. 0.83

  Alignments for each domain:
  == domain 1    score: 21.2 bits;  conditional E-value: 2.4e-07
   TIGR03796 283 fyalvmllydl.vlaliaialaainvlalqlvsrkrvdanrrlqqdagklagvaiaglqsietlkAsglesdffsrwaGyqaklln...aeqelgvatallsvlpelltsltsalilvvgglrvlegeltiGmlvafqsllasflepveklvglvselqeleadlerldDvlenpvdeeleeeeekaaeseekekLs.Gkvelrnvtfgysa 489
                 + +l ml y l   a+ ++++ ++ + + ++v+r+ + ++ rl++++   ++v+ ++l +i t+k  g e++f + +    ak l+   + q+l + t +l + + ++++l+s l+    + + ++++     l  fq l    +  ++ l ++ ++  + + +l+r+   l  p+    ++        e+ ++Ls G+ve+ + tf ++a
  MMETSP1137-20121227|4105_1 494 LLTLAMLFYILgPAAVGGVCVCVVTLPVNAVVMRRIKRLQDRLMKEKDARMAVVSETLAAIRTIKLHGWEAQFEKAIGDRRAKELStlrTFQRLAAITSTLWLCAPSMAALASFLVKNAIFGQDISASQGFTSLTLFQLL----SVSLTVLPNVLNQAIQAKVGLNRITRFLALPEVDGRTQ------PPET-TRLSiGEVEVIDATFCWNA 694
                 33455555554144556677778888888899999999*********************************998888888898765111567777777777777888888888877665555555555555555555555....55556666666666667778888777776654333322......2333.4554477777777777665 PP

  == domain 2    score: 64.9 bits;  conditional E-value: 1.4e-20
   TIGR03796 495 iedfslslkpGqrvAlvGgsGsGkstiaklvaGlyepwsGeilfDgkpreeiprevlanslalvdqdivlfegtvrdnltlwdetipeedlvrAakDAaihdvilarpggyeaelaegganlsGGqrqRleiARaLvknPsiLilDEatsaLDaetEkaidenlrr...RgctciivaHRLs.tiRdcdeiivlerG 687
                 +++++ls++pG+ v +vG+ G+Gks +   + G    ++G +++ g             ++++  q+  + ++t+r+n+ l+ ++  e++    +   a+  +i+ +p+g ++e+ e g nlsGGq+qRl++ARa  ++  i++lD++ sa+Da++ ++i ++  +      t ++v+H ++ t+  + +++v+ +G
  MMETSP1137-20121227|4105_1 748 LRGIELSVSPGELVLVVGPTGCGKSSLLSALLGDVPRVAGAVAMRG-------------TVSYCPQKAWVCNTTLRENI-LFGSAFDESRYNAVIAACALGPDIAMLPAGDRTEIGEKGVNLSGGQQQRLNLARACYAHTDIVLLDDVLSAVDAHVGQHIYNECIHgflASRTRVLVTHSVAlTLPRASKVVVMTKG 930
                 7899*********************998888898999999998766.............6899999999*********9.899999999998888888999*********************************************************998876542224568999999987688899999999988 PP

  == domain 3    score: 174.1 bits;  conditional E-value: 1.3e-53
   TIGR03796  174 pafskifvDeilveeaqewlrplllgll.ltallqvvltllqlallrrleiklavassarflwhilrlPveffaqRaageiasRvqln.dkvaellsgqlattvldlvlvvfyalvmll.....ydlvlaliaialaainvlalqlvsrkrvdanrrlqq.dagklagvaiaglqsietlkAsglesdffsrwaGyqakllnaeqelgvatallsvlpelltsltsalilvvgglrvlegeltiGmlvafqsllasflepveklvglvselqeleadlerldDvlenpvdeeleeeeekaaeseekekLsGkvelrnvtfgysaleapliedfslslkpGqrvAlvGgsGsGkstiaklvaGlyepwsGeilfDgkpreeiprevlanslalvdqdivlfegtvrdnltlwdet..ipeedlvrAakDAaihdvilarpggyeaelaegganlsGGqrqRleiARaLvknPsiLilDEatsaLDaetEkaidenlrrRgc...tciivaHRLstiRdcdeiivlerGkvverG.tHeellakegaYarL 708 
                   ++ k++v ++  ++ +e   pl+l ++  ta +   +tll++ ll   ++  + +  a++ + +lr  + +f+    g i +R +++   + + ++ q   t++ ++ v+  a+v  l      +++l + a+a+aa    a+ +  r+ + + +rl++ +++ l +   +++     ++A g+e  f++  a     + +a   l  ++++l+v  +++ sl + ++++  +++   g+l  G      s +++f++ v  +  ++++l+    d+er+++  +    e++++     ae + +   + +++++ v   y +  ap+ + +++s+   +r  +vG  G+Gks +a  +  + e +sG+i++ g++++ +p ++l++ +++++q+ +lf+gt+r nl   ++   +++e l  A++ A ++ ++ a+p g+++ l+egg nls G+rq + + RaL k+ siL++DEat+++D et+ +i++ lr   c   t++ vaHRL t+   ++++vl  G v+e+   H  l++++g+ + L
  MMETSP1137-20121227|4105_1 1080 SVALKMWVHSMSPGGGDET-VPLVLYVCaGTAFI--SMTLLRNLLLPSASVAASRKLHASMTHSVLRARIGWFEATPLGRILNRFSSDvSAIDQQVATQFKDTLVITLNVLAIAVVCTLgsgeaASQLLVAAAVAVAAAASYAVYCFYRTPARELKRLESlTKSPLFAFFAETVTGAAVVRAFGAERRFVATAAARVDDANRALFYLWHTNQWLRVSMNMVGSLVTGSVVA--SVLWEAGTLKGGDAGLTLSYATQFTQAVMWFFRIITQLEVSMNDVERVNEFSHRLPLEAYDQ----GAEPNAEWPSDPTITFESVCMKYPTASAPVFNSLTFSVPAFTRCGVVGRTGAGKSSLAVALFRVVELSSGKIVIGGVDHACVPLQTLRSRMSIIQQEPTLFRGTLRYNLMPVESGepLADELLWAALRRAGLEVKVRAMPLGLDHVLSEGGGNLSAGERQLVCMTRALLKRASILLMDEATASVDHETDARIQDMLRSDFCgntTILTVAHRLHTVMFYERVLVLGAGAVLEHDaPHALLTKQNGVLRGL 1619
                  4555666665555444444.45555444044444..5789********************************************99863568888889988888888888888888765222225788999999999999999999999999999999863667789999999***************************************************9999865..556668*******9999999999*99999999999988888888888887654433333333....2333333566779************************************************************************************************9988642388999***************************************************************************98665547888***********************9861588888899987655 PP

>> TIGR00958  3a01208: antigen peptide transporter 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.6     0.067       4.3     255     400 ..     460     608 ..     432     654 .. 0.70
   2 !   81.3   0.7   1.6e-25     1e-23     496     689 ..     747     930 ..     741     936 .. 0.87
   3 !  170.5   0.0   1.7e-52   1.1e-50     229     709 ..    1126    1618 ..    1045    1620 .. 0.87

  Alignments for each domain:
  == domain 1    score: 3.3 bits;  conditional E-value: 0.067
   TIGR00958 255 nktGeltSRlssDtstvseslslnvnvllrnlvkllgllifmlslSprL...tlvtllalPlvllaekvfgkvyqklseevqeavakanqvaeEalsglrTVrSFaaEek.Ea...srfkekleeilqlnkkkalayalylwttellgllilv 400
                   +Gelt  l+ D+++++   +    v+l     ll+l ++   l p       v +++lP+  ++ + +    + l +e          v+ E l+++rT++  + E + E    +r  ++l+++++ ++ +a++ +l l   ++ +l++++
  MMETSP1137-20121227|4105_1 460 SSVGELTNLLAVDANNITIFTPAASWVVLEGAQLLLTLAMLFYILGPAAvggVCVCVVTLPVNAVVMRRIKRLQDRLMKEKDAR----MAVVSETLAAIRTIKLHGWEAQfEKaigDRRAKELSTLRTFQRLAAITSTLWLCAPSMAALASFL 608
                 578999999999999998776666666665555444443333333332211146777888888888887777777777665444....4599***********99988652221225777788888888888888888777777776666554 PP

  == domain 2    score: 81.3 bits;  conditional E-value: 1.6e-25
   TIGR00958 496 vlkdLtftlepGevvalVGPsGsGKStvaallenlYqPtgGqvllDgkplkeydhkylhrkvalVgqEPvlfsgsvreNiaYGltktedeevtaaakaanahdFiselekgydtevgekGsqlsgGqkqriAiARALvrkPrvLiLDeAtSALDaeveqllqe...sksaksrtvlliahrLs.tvekadkilvlkkg 689
                  l+++ ++++pGe v +VGP G GKS+  + l       +G v              ++  v    q   + + ++reNi +G    ++ +  a+  a+     i  l+ g  te+gekG  lsgGq+qr+ +ARA   +  +++LD+  SA+Da+v q +++       +srt +l++h    t  +a k++v++kg
  MMETSP1137-20121227|4105_1 747 TLRGIELSVSPGELVLVVGPTGCGKSSLLSALLGDVPRVAGAV-------------AMRGTVSYCPQKAWVCNTTLRENILFGSAF-DESRYNAVIAACALGPDIAMLPAGDRTEIGEKGVNLSGGQQQRLNLARACYAHTDIVLLDDVLSAVDAHVGQHIYNeciHGFLASRTRVLVTHSVAlTLPRASKVVVMTKG 930
                 5899***********************9987754444444554.............567778888999999************765.55667777777888889*******************************************************999977666789*********9973679********998 PP

  == domain 3    score: 170.5 bits;  conditional E-value: 1.7e-52
   TIGR00958  229 marinlriredlfksllrQdigFfdenktGeltSRlssDtstvseslslnvnvllrnlvkllgllifmlslSprLtlvtllalPlvllaekvfgk..vyqklseevq..eavakanqva..eEalsglrTVrSFaaEek....EasrfkekleeilqlnkkkalayalylwttellgllilvlvLayGgqlvlegkvssgnLvsFlLYqlqlgeavreLsevysellkavGasekvFeyldRkPqlelsgtlapkn...leGkveFqdVsFsYPsrpdkpvlkdLtftlepGevvalVGPsGsGKStvaallenlYqPtgGqvllDgkplkeydhkylhrkvalVgqEPvlfsgsvreNiaYGltkte..deevtaaakaanahdFiselekgydtevgekGsqlsgGqkqriAiARALvrkPrvLiLDeAtSALDaeveqllqe...sksaksrtvlliahrLstvekadkilvlkkgsvvelGt.hkqLmekedvykq 709 
                  +   ++++++ + +s+lr  ig+f++++ G +  R ssD s + + ++++  + l     +l+  ++   +S + +  +l+a  + ++a+  +    +y++ ++e++  e+++k+   a   E + g   Vr F+aE +     a r  ++ + ++ l+++++  ++ + ++ +l+   +  +vL+        g+++ g+    l Y  q+++av  +  + ++l  +    e+v e+  R P    +   +p+        ++F+ V   YP+  + pv++ Ltf++ + +   +VG  G GKS+ a  l +  +  +G++++ g++   +  + l++++ +++qEP lf+g++r N+    +  +  de + aa ++a+ +  +  ++ g d  + e G  ls+G +q + + RAL+++  +L++DeAt+ +D e+++ +q+   s    + t+l +ahrL+tv   +++lvl  g+v e    h+ L ++++v++ 
  MMETSP1137-20121227|4105_1 1126 SVAASRKLHASMTHSVLRARIGWFEATPLGRILNRFSSDVSAIDQQVATQFKDTLVITLNVLAIAVVCTLGSGEAASQLLVAAAVAVAAAASYAVycFYRTPARELKrlESLTKSPLFAffAETVTGAAVVRAFGAERRfvatAAARVDDANRALFYLWHTNQWLRVSMNMVGSLVTGSVVASVLWEA------GTLKGGDAGLTLSYATQFTQAVMWFFRIITQLEVSMNDVERVNEFSHRLPLEAYDQGAEPNAewpSDPTITFESVCMKYPTA-SAPVFNSLTFSVPAFTRCGVVGRTGAGKSSLAVALFRVVELSSGKIVIGGVDHACVPLQTLRSRMSIIQQEPTLFRGTLRYNLMPVESGEPlaDELLWAALRRAGLEVKVRAMPLGLDHVLSEGGGNLSAGERQLVCMTRALLKRASILLMDEATASVDHETDARIQDmlrSDFCGNTTILTVAHRLHTVMFYERVLVLGAGAVLEHDApHALLTKQNGVLRG 1618
                  5556789************************************************9999999999999999999888888877777777666664227999999998668****98776448***************862222567888888899999999999999999999999999999999975......5677787777799*************************************9888877777642226789***********96.68********************************************************************************998777666746667788899*********************************************************999999997656667899************************988865526666666668765 PP

>> TIGR01846  type_I_sec_HlyB: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.2   0.4    0.0022      0.14     284     441 ..     512     667 ..     472     698 .. 0.69
   2 !   72.0   0.1   1.1e-22   6.8e-21     472     667 ..     747     930 ..     712     935 .. 0.81
   3 !  161.6   0.2   8.3e-50   5.3e-48     193     682 ..    1112    1612 ..    1079    1623 .. 0.83

  Alignments for each domain:
  == domain 1    score: 8.2 bits;  conditional E-value: 0.0022
   TIGR01846 284 vlvslviylllsvivspilrkrvedkfeksaeaq.sflvesvtgietikasavepqfkrrWerqlaayvaasfkvtklgnlasqaieliqkltaalllwfGaklvlkGelsvGqlvafnmlagrvsqPvlrlaqlWqdfqqvkialerlGdildsPtea 441
                 v v++v+   +  +v  +  kr++d+  k+ +a+ +++ e++++i+tik    e qf++      a+ +++  + ++l+ ++s  + l     aal  ++  +++   ++s  q  +   l + +s  +  l  +     q+k+ l+r+   l  P   
  MMETSP1137-20121227|4105_1 512 VCVCVVTLP-VNAVVMRR-IKRLQDRLMKEKDARmAVVSETLAAIRTIKLHGWEAQFEKAIGDRRAKELSTLRTFQRLAAITST-LWLCAPSMAALASFLVKNAIFGQDISASQGFTSLTLFQLLSVSLTVLPNVLNQAIQAKVGLNRITRFLALPEVD 667
                 222222222.22222222.36889998888777527888******************************999999999999875.67888888888888888888888999988777666677777777777888888888888888888888887654 PP

  == domain 2    score: 72.0 bits;  conditional E-value: 1.1e-22
   TIGR01846 472 vlsnlsldikaGeviGivGpsGsGkstltkllqrlyvPekGrvlvdgvdlaladPawlrrqvgvvlqenvlfsrsirdnialakP..aiseekviaaaklaGahdfiselkqGyetevgekGaalsGGqrqrialaralvanPrilildeatsaldyeseavimrn.lreickgrtviiiahrls.tvraadrilvlekG 667
                  l+ ++l++ +Ge++ +vGp+G+Gks l   l           l d   +  a  +++r  v+   q++ + + ++r+ni  ++   +   + viaa  l      i  l+ G  te+gekG++lsGGq+qr+ lara  a   i++ld+  sa+d++  + i ++ ++   ++rt + ++h ++ t+ +a +++v+ kG
  MMETSP1137-20121227|4105_1 747 TLRGIELSVSPGELVLVVGPTGCGKSSLLSAL-----------LGDVPRV--AGAVAMRGTVSYCPQKAWVCNTTLRENILFGSAfdESRYNAVIAACALG---PDIAMLPAGDRTEIGEKGVNLSGGQQQRLNLARACYAHTDIVLLDDVLSAVDAHVGQHIYNEcIHGFLASRTRVLVTHSVAlTLPRASKVVVMTKG 930
                 6899**********************975433...........2222233..45678999********************998751123334444444443...34999*************************************************988887653899************9975899********998 PP

  == domain 3    score: 161.6 bits;  conditional E-value: 8.3e-50
   TIGR01846  193 valsllrtylfahltsridvelgaklyrhllalPlsyfesrrvGdtvarvr.eleqirefltgs...altvvldllfvvvflavmf.fyspklt...lvvlvslviylllsvivspilr.krvedkfeksaeaqsflvesvtgietikasavepqfkrrWerqlaayvaasfkvtklgnlasqaieliqkltaalllwfGaklvlkGelsvGqlvafnmlagrvsqPvlrlaqlWqdfqqvkialerlGdilds.Pteassagkaalpel..kGaiefenirfrykedspevlsnlsldikaGeviGivGpsGsGkstltkllqrlyvPekGrvlvdgvdlaladPawlrrqvgvvlqenvlfsrsirdnialakPais..eekviaaaklaGahdfiselkqGyetevgekGaalsGGqrqrialaralvanPrilildeatsaldyeseavimrnlre.ickgrtviiiahrlstvraadrilvlekGkivesGkheellake 682 
                  + ++llr+ l+  ++      l a + + +l   +++fe    G ++ r   ++  i + ++ +   +l++ l++l   v  +      +++l     v + +   y+++ +  +p    kr+e+   +++   +f+ e+vtg   ++a   e +f       +    +a f + ++ ++   +++++  l++  ++     l  +G l  G+      +a + +q v+ + ++          +er+ +   + P ea+++g+  ++e   + +i+fe + ++y   s++v++ l+++++a +  G+vG++G+Gks l+  l r+     G++++ gvd a +  ++lr +++++ qe  lf++++r n++  + + +  +e + aa + aG +  + +++ G +  ++e G++ls G rq + ++ral++   il++deat+++d e++a i++ lr+  c + t++++ahrl tv   +r+lvl  G ++e+   + ll+k+
  MMETSP1137-20121227|4105_1 1112 ISMTLLRNLLLPSASVAASRKLHASMTHSVLRARIGWFEATPLGRILNRFSsDVSAIDQQVATQfkdTLVITLNVLAIAVVCTLGSgEAASQLLvaaAVAVAAAASYAVYCFYRTPARElKRLES--LTKSPLFAFFAETVTGAAVVRAFGAERRFVATAAARVDDANRALFYLWHTNQWLRVSMNMVGSLVTGSVV--ASVLWEAGTLKGGDAGLTLSYATQFTQAVMWFFRIITQLEVSMNDVERVNEFSHRlPLEAYDQGAEPNAEWpsDPTITFESVCMKYPTASAPVFNSLTFSVPAFTRCGVVGRTGAGKSSLAVALFRVVELSSGKIVIGGVDHACVPLQTLRSRMSIIQQEPTLFRGTLRYNLMPVESGEPlaDELLWAALRRAGLEVKVRAMPLGLDHVLSEGGGNLSAGERQLVCMTRALLKRASILLMDEATASVDHETDARIQDMLRSdFCGNTTILTVAHRLHTVMFYERVLVLGAGAVLEHDAPHALLTKQ 1612
                  67899********************************************8537888887766542224555555443333322221122333331112444555556666665555432144444..34566789**********************9999999999999999999999998888888777654432..233444688888887777789****************99999999*****997644******99988887522678***********************************************************************************************987766654115667778899*******************************************************************854999******************************98877777664 PP

>> TIGR01193  bacteriocin_ABC: ABC-type bacteriocin transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.5   0.1    0.0085      0.54     285     450 ..     499     659 ..     457     696 .. 0.60
   2 !   68.0   0.0   2.1e-21   1.4e-19     489     685 ..     747     931 ..     718     936 .. 0.86
   3 !  132.9   0.0   4.8e-41   3.1e-39     214     705 ..    1116    1619 ..    1095    1622 .. 0.79

  Alignments for each domain:
  == domain 1    score: 6.5 bits;  conditional E-value: 0.0085
   TIGR01193 285 ivglvlvlqniklfllslvaiPvyaviiilfkktfeklnkdameanavlnssiiedlnGietiksltseeerykkidsefadylekslkyakaeavqqalkavlklilnvvilwvGallvirekltlGql...ltfnallsyflnPleniinlqpklqaarvannrlne 450
                 ++  +l    +   ++ +v++Pv av++   k+  ++l k++    a     + e l+ i tik  + e++  k i ++ a+ l    ++++  a+ ++l      +++ +  ++    ++ ++++  q    lt   lls  l+ l n++n   +  +a+v  nr+  
  MMETSP1137-20121227|4105_1 499 MLFYILGPAAVGGVCVCVVTLPVNAVVMRRIKRLQDRLMKEKDARMA----VVSETLAAIRTIKLHGWEAQFEKAIGDRRAKELSTLRTFQRLAAITSTLWLCAP-SMAALASFLVKNAIFGQDISASQGftsLTLFQLLSVSLTVLPNVLN---QAIQAKVGLNRITR 659
                 333456666677789999999**999987777666666665555555....556999*******99999988888877776655555555554444444433222.3333444455556667777777651114444555666666666655...44556777777665 PP

  == domain 2    score: 68.0 bits;  conditional E-value: 2.1e-21
   TIGR01193 489 vledislkikknekitlvGlsGsGkstlakllvkffqaesGeillngkslkdidkhelrqlinylPqePfifsGsilenlllgakenvs.qeeikkaveiaeikddieklplGyqtelseeassisgGqkqrlalarallsdskvlildestsnldlltekkivenllk..lkdktiifvahrlsva.kksdkiivldeGk 685
                  l  i+l+++  e + +vG +G Gks+l   l++      G +             ++r +++y Pq+ ++ + ++ en+l+g+  + s  + +++a+    +  di  lp G  te+ e++ ++sgGq+qrl lara  +++++++ld++ s +d  + ++i ++ ++  l  +t ++v+h + ++  ++ k++v+ +G+
  MMETSP1137-20121227|4105_1 747 TLRGIELSVSPGELVLVVGPTGCGKSSLLSALLGDVPRVAGAV-------------AMRGTVSYCPQKAWVCNTTLRENILFGSAFDESrYNAVIAACA---LGPDIAMLPAGDRTEIGEKGVNLSGGQQQRLNLARACYAHTDIVLLDDVLSAVDAHVGQHIYNECIHgfLASRTRVLVTHSVALTlPRASKVVVMTKGG 931
                 6788999999999999999999999999988887777666665.............57999**********************8755441455666665...578*************************************************************995449**********99987358999****9996 PP

  == domain 3    score: 132.9 bits;  conditional E-value: 4.8e-41
   TIGR01193  214 yikafllivlgqrlsidiilsyikhlfelPmsffstrrvGeivsrft.daskiidalast...ilslfldlsilvivglv.lvlqniklfllslvaiPvya.viiilfkktf.eklnkdameanavlnssiiedlnGietiksltseeerykkidsefadylekslkyakaea....vqqalkavlklilnvvilwv.GallvirekltlGqlltfnallsyflnPleniinlqpklqaarvannrlnev.ylvdsef.kekkkltelenlngdievndvsysyGyg.sevledislkikknekitlvGlsGsGkstlakllvkffqaesGeillngkslkdidkhelrqlinylPqePfifsGsilenll.lgakenvsqeeikkaveiaeikddieklplGyqtelseeassisgGqkqrlalarallsdskvlildestsnldlltekkivenll..klkdktiifvahrlsvakksdkiivldeGkiieqGs.hkellkenGfyasl 705 
                   +++ ll   +   s+++  s  + ++   + +f +   G i+ rf+ d+s+i + +a+    +l + l++  + +v ++      ++l++ + va+ + a   ++ f +t  ++l++ +  +++ l +   e ++G   ++++++e         +  d  +  + + ++++      +++ +++  ++   +lw  G+l      ltl     f   + +f         + ++l  +    +r+ne  + ++ e  +++ + +++  +   i+++ v  +y  + ++v++ +++++ +  +  +vG +G+Gks+la  l +  + +sG+i ++g++ + +  ++lr  ++ + qeP +f G++  nl+ +++ e + +e +++a++ a ++  ++ +plG++  lse + ++s+G +q ++++rall  + +l++de+t+++d  t+ +i + l   +  + ti+ vahrl+     ++++vl  G ++e+   h  l k+nG  + l
  MMETSP1137-20121227|4105_1 1116 LLRNLLLPSASVAASRKLHASMTHSVLRARIGWFEATPLGRILNRFSsDVSAIDQQVATQfkdTLVITLNVLAIAVVCTLgSGEAASQLLVAAAVAVAAAAsYAVYCFYRTPaRELKRLESLTKSPLFAFFAETVTGAAVVRAFGAERRFVATAAARVDDANRALFYLWHTNQwlrvSMNMVGSLVTGSVVASVLWEaGTLKGGDAGLTLSYATQFTQAVMWFFR-------IITQLEVSMNDVERVNEFsHRLPLEAyDQGAEPNAEWPSDPTITFESVCMKYPTAsAPVFNSLTFSVPAFTRCGVVGRTGAGKSSLAVALFRVVELSSGKIVIGGVDHACVPLQTLRSRMSIIQQEPTLFRGTLRYNLMpVESGEPLADELLWAALRRAGLEVKVRAMPLGLDHVLSEGGGNLSAGERQLVCMTRALLKRASILLMDEATASVDHETDARIQDMLRsdFCGNTTILTVAHRLHTVMFYERVLVLGAGAVLEHDApHALLTKQNGVLRGL 1619
                  55666666666677777777888889999999**************6488888777876522256666766555444444145677889999999987654157899988751556666666788899999****************876666666666655555555555441111556667777777788899962555556667777777777777777664.......445666666677888886334555540445555667778899**********875168********************************************************************************97788999999***********************************************************************99988632478999***************************876266666788876655 PP

>> TIGR01842  type_I_sec_PrtD: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0       2.6   1.7e+02     317     357 ..     471     511 ..     461     526 .. 0.89
   2 !   94.9   0.0   1.4e-29   9.3e-28     325     529 ..     740     930 ..     718     936 .. 0.86
   3 !   94.6   0.0   1.7e-29   1.1e-27     315     534 ..    1381    1602 ..    1344    1611 .. 0.92

  Alignments for each domain:
  == domain 1    score: -1.7 bits;  conditional E-value: 2.6
   TIGR01842 317 levenvslvppeekkktlkgisfalkaGealaiiGpsgsGk 357
                 ++++n+++ +p +   +l+g ++ l+      i+Gp++ G 
  MMETSP1137-20121227|4105_1 471 VDANNITIFTPAASWVVLEGAQLLLTLAMLFYILGPAAVGG 511
                 67899********************************9986 PP

  == domain 2    score: 94.9 bits;  conditional E-value: 1.4e-29
   TIGR01842 325 vppeekkktlkgisfalkaGealaiiGpsgsGkssLarllvGvwlpasGsvrlDgadlkqwdretlGksiGYlPqdveLfeGtvaeni...aRfeenadaekvieaaklagvhelilrlpkGYdteigegGaaLsgGqrqRiaLaRalygdPklvvLDePnanLDeeGeqalakalkelkarkitvvvithrpsl.lelvdkilvlkdG 529
                  +p+  ++tl+gi++++++Ge + ++Gp g GkssL   l+G ++ ++G v + g             ++ Y Pq+  + + t+ eni   + f+e    ++vi+a  l      i+ lp G  teige+G +LsgGq+qR+ LaRa y +  +v+LD+  + +D++  q +++  ++   + +t v++th ++l l  + k++v+ +G
  MMETSP1137-20121227|4105_1 740 ETPRP-HYTLRGIELSVSPGELVLVVGPTGCGKSSLLSALLGDVPRVAGAVAMRG-------------TVSYCPQKAWVCNTTLRENIlfgSAFDE-SRYNAVIAACALGP---DIAMLPAGDRTEIGEKGVNLSGGQQQRLNLARACYAHTDIVLLDDVLSAVDAHVGQHIYNECIHGFLASRTRVLVTHSVALtLPRASKVVVMTKG 930
                 44444.49*******************************************9876.............69******************44445666.66677777776654...5999************************************************9999999888888888999999***999746899******988 PP

  == domain 3    score: 94.6 bits;  conditional E-value: 1.7e-29
   TIGR01842  315 gelevenvslvppeekkktlkgisfalkaGealaiiGpsgsGkssLarllvGvwlpasGsvrlDgadlkqwdretlGksiGYlPqdveLfeGtvaeniaRfe..enadaekvieaaklagvhelilrlpkGYdteigegGaaLsgGqrqRiaLaRalygdPklvvLDePnanLDeeGeqalakalkelkarkitvvvithrpsllelvdkilvlkdGalkaf 534 
                   +++ e+v +  p++ +++++ ++f++ a    +++G  g+GkssLa  l  v++ +sG++ + g+d   +  +tl  ++  + q+  Lf+Gt+  n+  +e  e + +e + +a + ag    +  +p G d +++egG +Ls+G rq + + Ral     ++++De  a++D+e ++ + + l +    ++t+++++hr + +   +++lvl +Ga+ ++
  MMETSP1137-20121227|4105_1 1381 PTITFESVCMKYPTASAPVFNSLTFSVPAFTRCGVVGRTGAGKSSLAVALFRVVELSSGKIVIGGVDHACVPLQTLRSRMSIIQQEPTLFRGTLRYNLMPVEsgEPLADELLWAALRRAGLEVKVRAMPLGLDHVLSEGGGNLSAGERQLVCMTRALLKRASILLMDEATASVDHETDARIQDMLRSDFCGNTTILTVAHRLHTVMFYERVLVLGAGAVLEH 1602
                  47899*********************************************************************************************9886225677888889999****999*************************************************************99999999************************98765 PP

>> TIGR01192  chvA: glucan exporter ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0       1.7   1.1e+02     165     342 ..     514     690 ..     506     698 .. 0.74
   2 !   51.7   0.0   1.9e-16   1.2e-14     344     545 ..     741     930 ..     718     937 .. 0.83
   3 !  116.4   0.0   4.8e-36   3.1e-34     331     571 ..    1379    1624 ..    1240    1629 .. 0.79

  Alignments for each domain:
  == domain 1    score: -1.0 bits;  conditional E-value: 1.7
   TIGR01192 165 lgivyvliaklvmsrtkegqaaveeyyhsvfkhvsdsisnvsvvhsynrieaetkalkkftekllsaqypvldwwalasglnriastislvi.ilvigtvlvkkgelsvgeviafigfanlligrldqlkafvtqivearakled...ffdledsvkereepadarelknvkgavefrdisf 342
                 +++v + +  +vm r k  q  + +   + ++ vs++++ +  ++ +    +  ka+ +   k ls+        a++s+l   a +++ ++  lv  +++ +  ++s  +  + + + +ll   l  l + ++q+++a+  l+    f+ l   v  r +p + + l+   g+ve  d +f
  MMETSP1137-20121227|4105_1 514 VCVVTLPVNAVVMRRIKRLQDRLMKEKDARMAVVSETLAAIRTIKLHGWEAQFEKAIGDRRAKELSTLRTFQRLAAITSTLWLCAPSMAALAsFLVKNAIFGQ--DISASQGFTSLTLFQLLSVSLTVLPNVLNQAIQAKVGLNRitrFLAL-PEVDGRTQPPETTRLS--IGEVEVIDATF 690
                 5566667788999999999999999999999999999999999988888888888999999999999999999999999999988776655515555566554..56677778888888999999999999999999999877651114444.3466666777766665..46666655555 PP

  == domain 2    score: 51.7 bits;  conditional E-value: 1.9e-16
   TIGR01192 344 fanssqgvrdvsfeakagqtvaivgptgagkttlinllqrvydpksgqilidgvdiatvtreslrksiatvfqdagllnrsirenirlgredatdeevveaakaaaasd.fiekrlkgydtlvgergnrlsggerqrlaiarailknapilvldeatsaldvetearv.kdaidalrknrttfiiahrls.tvreadlvlfldqg 545
                  +  +  +r + + +  g+ v +vgptg gk++l+  l       +g +             ++r +++   q a + n ++reni +g   a de  ++a  aa+a    i     g  t +ge+g +lsgg++qrl +ara    + i++ld+  sa+d      +  + i  +   rt  +++h ++ t+  a  v+ + +g
  MMETSP1137-20121227|4105_1 741 TPRPHYTLRGIELSVSPGELVLVVGPTGCGKSSLLSALLGDVPRVAGAV-------------AMRGTVSYCPQKAWVCNTTLRENILFGS--AFDESRYNAVIAACALGpDIAMLPAGDRTEIGEKGVNLSGGQQQRLNLARACYAHTDIVLLDDVLSAVDAHVGQHIyNECIHGFLASRTRVLVTHSVAlTLPRASKVVVMTKG 930
                 5555666788999999*****************9986654333333443.............5677889999****************95..889999999988888642588888999*******************************************99888725689**************986577778777777766 PP

  == domain 3    score: 116.4 bits;  conditional E-value: 4.8e-36
   TIGR01192  331 vkgavefrdisfefanssqgvrd.vsfeakagqtvaivgptgagkttlinllqrvydpksgqilidgvdiatvtreslrksiatvfqdagllnrsirenir.lgredatdeevv.eaakaaaasdfiekrlkgydtlvgergnrlsggerqrlaiarailknapilvldeatsaldvetearvkdaida.lrknrttfiiahrlstvreadlvlfldqgrliekgsfdel.iqkdgrfakllrasg 571 
                     ++ f+ + ++++ +s  v++ ++f + a     +vg tgagk++l   l rv + +sg+i+i gvd a+v  ++lr  ++ + q+  l+  ++r n+  +   +   +e++ +a + a  +  +     g d ++ e g +ls gerq + ++ra+lk a il++deat+++d et+ar++d + + +  n t + +ahrl tv   + vl l  g ++e+ + + l ++++g +  l  +sg
  MMETSP1137-20121227|4105_1 1379 SDPTITFESVCMKYPTASAPVFNsLTFSVPAFTRCGVVGRTGAGKSSLAVALFRVVELSSGKIVIGGVDHACVPLQTLRSRMSIIQQEPTLFRGTLRYNLMpVESGEPLADELLwAALRRAGLEVKVRAMPLGLDHVLSEGGGNLSAGERQLVCMTRALLKRASILLMDEATASVDHETDARIQDMLRSdFCGNTTILTVAHRLHTVMFYERVLVLGAGAVLEHDAPHALlTKQNGVLRGLAEESG 1624
                  356899*************9997589*************************************************************************862444444455655155666777777888889*****************************************************99763677888889*************************9987752677888888877776 PP

>> TIGR00972  3a0107s01c2: phosphate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0   3.5e-05    0.0023      16      47 ..     747     778 ..     743     800 .. 0.78
   2 !   51.3   0.0   3.3e-16   2.1e-14      78     219 ..     789     930 ..     784     940 .. 0.88
   3 !   55.1   0.0   2.2e-17   1.4e-15      21     233 ..    1404    1611 ..    1383    1615 .. 0.80

  Alignments for each domain:
  == domain 1    score: 15.2 bits;  conditional E-value: 3.5e-05
   TIGR00972  16 alkdvnleikknkvtaliGpsGcGkstllrsl 47 
                 +l+ ++l+++  +++ ++Gp+GcGks+ll +l
  MMETSP1137-20121227|4105_1 747 TLRGIELSVSPGELVLVVGPTGCGKSSLLSAL 778
                 6899*************************987 PP

  == domain 2    score: 51.3 bits;  conditional E-value: 3.3e-16
   TIGR00972  78 velrkkvGmvfqkpnpfpmsiydnvayglrlkgikdkkeldeiveesLkkaalwdevkdklkksalsLsGGqqqrlciaralavePevlLlDePtsaLDpiateki.eeliqeLkkkytivivthnmqqaarvsdktaffleG 219
                 v++r +v    qk    + ++ +n+ +g    + +  +++ + +      a l    ++++ +++++LsGGqqqrl +ara   + +++LlD+  sa+D+   ++i +e i+    + t v+vth+++ +   + k++++++G
  MMETSP1137-20121227|4105_1 789 VAMRGTVSYCPQKAWVCNTTLRENILFGSAFDESRYNAVIAACAL-GPDIAMLPAGDRTEIGEKGVNLSGGQQQRLNLARACYAHTDIVLLDDVLSAVDAHVGQHIyNECIHGFLASRTRVLVTHSVALTLPRASKVVVMTKG 930
                 6788999999999999999999******99999888887766554.44668888889999*******************************************9995689*******************99888888888877 PP

  == domain 3    score: 55.1 bits;  conditional E-value: 2.2e-17
   TIGR00972   21 nleikknkvtaliGpsGcGkstllrslnrlndlveevrieGkvllegkdiydkkldvvelrkkvGmvfqkpnpfpmsiydnvayglrlkgikdkkeldeiveesLkkaalwdevk.......dklkksalsLsGGqqqrlciaralavePevlLlDePtsaLDpiatekieeliq.eLkkkytivivthnmqqaarvsdktaffleGelveegeteqifek 233 
                  ++++++ +  +++G +G+Gks+l  +l r+ +l      +Gk+++ g d  +  +  ++lr+++ ++ q+p+ f  ++  n++     + +      de+  ++L++a+l  +v+         l++ + +Ls G +q +c+ ral  +  +lL+De t+++D ++ ++i+++++ +   + ti+ v h ++      +++ ++  G ++e++ ++ +++k
  MMETSP1137-20121227|4105_1 1404 TFSVPAFTRCGVVGRTGAGKSSLAVALFRVVELS-----SGKIVIGGVD--HACVPLQTLRSRMSIIQQEPTLFRGTLRYNLMPVESGEPL-----ADELLWAALRRAGLEVKVRamplgldHVLSEGGGNLSAGERQLVCMTRALLKRASILLMDEATASVDHETDARIQDMLRsDFCGNTTILTVAHRLHT-VMFYERVLVLGAGAVLEHDAPHALLTK 1611
                  555566666789********************99.....89****9987..55678999******************99998654444433.....344444555555554444321111117799999*******************************************99637999***********86.56789**************99999886 PP

>> TIGR02315  ABC_phnC: phosphonate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   0.0   4.7e-07     3e-05      14      59 ..     744     789 ..     732     802 .. 0.82
   2 !   29.3   0.0   1.8e-09   1.2e-07     143     233 ..     852     941 ..     843     949 .. 0.81
   3 !   61.5   0.0   2.7e-19   1.7e-17       2     234 ..    1383    1609 ..    1382    1615 .. 0.80

  Alignments for each domain:
  == domain 1    score: 21.4 bits;  conditional E-value: 4.7e-07
   TIGR02315  14 gkqalknvnleikkGelvaviGlsGaGkstllrsinrlveissgsi 59 
                  + +l+ ++l++++Gelv v+G+ G Gks ll ++ + v    g++
  MMETSP1137-20121227|4105_1 744 PHYTLRGIELSVSPGELVLVVGPTGCGKSSLLSALLGDVPRVAGAV 789
                 57789***************************98866555555555 PP

  == domain 2    score: 29.3 bits;  conditional E-value: 1.8e-09
   TIGR02315 143 adqLsGGqqqRvaiaRalaqqpklilaDEPiasLDpksskqvmdllkrinkekgitvivnlHqvdlakkyadrivglkageivfdgassel 233
                   +LsGGqqqR+ +aRa   +++++l D+ ++++D +  +++ +   +    +   v+v  H+v l+   a+++v + +g  +   a+ + 
  MMETSP1137-20121227|4105_1 852 GVNLSGGQQQRLNLARACYAHTDIVLLDDVLSAVDAHVGQHIYNECIHGFLASRTRVLV-THSVALTLPRASKVVVMTKGGGIAAVAPPNA 941
                 568**************************************998876655555555555.5999999999999999998865555555555 PP

  == domain 3    score: 61.5 bits;  conditional E-value: 2.7e-19
   TIGR02315    2 levenlskvypngkq.alknvnleikkGelvaviGlsGaGkstllrsinrlveissgsillegkevtklkkkelrklrkkigmifqeynlierltvlenvLsgrlgakstlksllglfseedkekAlelLervglaelaakradqLsGGqqqRvaiaRalaqqpklilaDEPiasLDpksskqvmdllkr.inkekgitvivnlHqvdlakkyadrivglkageivfdgasseld 234 
                  + +e++  +yp++++ +++ + +++      +v+G+ GaGks l  ++ r+ve ssg+i++ g + +      l++lr+++++i qe  l  r t   n++    g   + + l+  ++++  e  ++++  +gl+++ ++   +Ls G++q v ++Ral+++++++l DE +as+D ++  ++ d+l++  + ++  t++   H+++ ++ + +r++ l ag+++ ++a+++l 
  MMETSP1137-20121227|4105_1 1383 ITFESVCMKYPTASApVFNSLTFSVPAFTRCGVVGRTGAGKSSLAVALFRVVELSSGKIVIGGVDHA---CVPLQTLRSRMSIIQQEPTLF-RGTLRYNLMPVESGEPLADELLWAALRRAGLEVKVRAM-PLGLDHVLSEGGGNLSAGERQLVCMTRALLKRASILLMDEATASVDHETDARIQDMLRSdFCGNT--TILTVAHRLHTVM-FYERVLVLGAGAVLEHDAPHALL 1609
                  56777778888765525677888888888899*****************************998866...668999********9998887.45555565555555555555566666666666666655.69*******************************************************95266554..4444456666554.779**********9999888765 PP

>> TIGR02673  FtsE: cell division ATP-binding protein FtsE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.2   0.0   1.5e-07   9.7e-06      12      64 ..     742     794 ..     732     814 .. 0.88
   2 !   23.4   0.0   1.4e-07   8.7e-06     136     213 ..     853     930 ..     842     931 .. 0.88
   3 !   64.5   0.0   3.4e-20   2.2e-18       2     202 ..    1383    1587 ..    1382    1598 .. 0.84

  Alignments for each domain:
  == domain 1    score: 23.2 bits;  conditional E-value: 1.5e-07
   TIGR02673  12 aagveaLkdvslkiekgeflfltGasGaGkttllklllgaekpsrGevevage 64 
                 ++ + +L+ ++l++++ge++ ++G+ G Gk++ll  llg     +G+v + g+
  MMETSP1137-20121227|4105_1 742 PRPHYTLRGIELSVSPGELVLVVGPTGCGKSSLLSALLGDVPRVAGAVAMRGT 794
                 567789******************************************99986 PP

  == domain 2    score: 23.4 bits;  conditional E-value: 1.4e-07
   TIGR02673 136 eelsgGeqqRvaiaRaivnkPelllaDePtGnlDdelserildllkelnkrGttvivathdeelvervkkrvlelekg 213
                  +lsgG qqR  +aRa   + +++l D+    +D+++ ++i +   +   +  t +++th  +l+  ++ +v+ ++kg
  MMETSP1137-20121227|4105_1 853 VNLSGGQQQRLNLARACYAHTDIVLLDDVLSAVDAHVGQHIYNECIHGFLASRTRVLVTHSVALTLPRASKVVVMTKG 930
                 68***************************************98666666667777888*******9999999999887 PP

  == domain 3    score: 64.5 bits;  conditional E-value: 3.4e-20
   TIGR02673    2 ielekvskeya.agveaLkdvslkiekgeflfltGasGaGkttllklllgaekpsrGevevagedvarlrerelpllRrkigvvfqDfkllkdrtvlenv......alalevrgkkeeeiqkrveevlelvgledkakalpeelsgGeqqRvaiaRaivnkPelllaDePtGnlDdelserildllkelnkrGttvivathdeelver 202 
                  i++e v ++y+ a++ + +++++++ +   + ++G+ GaGk++l   l+ + + s+G++ + g d a +    l +lR +++++ q+  l+     ++ +       la e+  +  ++   +v+     +gl++  ++   +ls Ge+q v + Ra++++ ++ll De t  +D+e+ +ri d+l++     tt++ ++h  + v  
  MMETSP1137-20121227|4105_1 1383 ITFESVCMKYPtASAPVFNSLTFSVPAFTRCGVVGRTGAGKSSLAVALFRVVELSSGKIVIGGVDHACVP---LQTLRSRMSIIQQEPTLFRGTLRYNLMpvesgePLADELLWAALRRAGLEVKVRAMPLGLDHVLSEGGGNLSAGERQLVCMTRALLKRASILLMDEATASVDHETDARIQDMLRSDFCGNTTILTVAHRLHTVMF 1587
                  789*******94567799*********************************************9877665...789***********9988654443332111111455566777777777888888899*********************************************************999999999999998876643 PP

>> TIGR00960  3a0501s02: type II secretory pathway family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   0.0   1.7e-06   0.00011      18      64 ..     747     793 ..     732     801 .. 0.88
   2 !   21.3   0.0     6e-07   3.9e-05     136     214 ..     852     930 ..     838     931 .. 0.86
   3 !   62.2   0.0   1.8e-19   1.2e-17       2     214 ..    1383    1597 ..    1382    1599 .. 0.82

  Alignments for each domain:
  == domain 1    score: 19.8 bits;  conditional E-value: 1.7e-06
   TIGR00960  18 aldnvtvkiekGelvflvGhsGaGkstllklilgiekpsaGkirvsg 64 
                 +l +++++++ Gelv +vG++G+Gks+ll  +lg     aG + + g
  MMETSP1137-20121227|4105_1 747 TLRGIELSVSPGELVLVVGPTGCGKSSLLSALLGDVPRVAGAVAMRG 793
                 799*****************************999988899888766 PP

  == domain 2    score: 21.3 bits;  conditional E-value: 6e-07
   TIGR00960 136 PvqlsgGeqqrvaiaravvnkPallladePtgnlddelsrdilelleevnraGttvlvathdenlveskrkrvltlskG 214
                  v+lsgG+qqr+++ara   +  ++l d+  + +d ++ ++i +   +   a  t ++ th   l   +  +v+++ kG
  MMETSP1137-20121227|4105_1 852 GVNLSGGQQQRLNLARACYAHTDIVLLDDVLSAVDAHVGQHIYNECIHGFLASRTRVLVTHSVALTLPRASKVVVMTKG 930
                 579***************************************986555556666777779****999999999999887 PP

  == domain 3    score: 62.2 bits;  conditional E-value: 1.8e-19
   TIGR00960    2 ikfeqvskaykgaaelaldnvtvkiekGelvflvGhsGaGkstllklilgiekpsaGkirvsgqdltklrdrevpflrrqiGivfqdfkllsdrtvydnvalalriiGvkgreieervsaalekvGlkdkakalPv...........qlsgGeqqrvaiaravvnkPallladePtgnlddelsrdilelleevnraGttvlvathdenlveskrkrvltlskG 214 
                  i+fe v  +y++a  + ++ +t++++      +vG +GaGks+l   +  + + s+Gki + g d + +    +  lr ++ i+ q+  l+     y+   ++++  G     ++e   aal++ Gl+ k +a+P            +ls Ge+q v+++ra++++ ++ll de t+ +d+e+   i ++l++     tt+l  +h  + v  + +rvl+l  G
  MMETSP1137-20121227|4105_1 1383 ITFESVCMKYPTASAPVFNSLTFSVPAFTRCGVVGRTGAGKSSLAVALFRVVELSSGKIVIGGVDHACV---PLQTLRSRMSIIQQEPTLFRGTLRYN--LMPVE-SGE--PLADELLWAALRRAGLEVKVRAMPLgldhvlsegggNLSAGERQLVCMTRALLKRASILLMDEATASVDHETDARIQDMLRSDFCGNTTILTVAHRLHTVMFY-ERVLVLGAG 1597
                  99*************************************************************987654...5678**********999987655544..34443.233..334566777777777777777777533333333333789******************************************999999999999**99998766.578877766 PP

>> TIGR03265  PhnT2: putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.0   0.2   2.2e-23   1.4e-21      18     219 ..     746     939 ..     734     948 .. 0.81
   2 !   25.0   0.0   3.4e-08   2.1e-06      24     223 ..    1404    1609 ..    1380    1636 .. 0.74

  Alignments for each domain:
  == domain 1    score: 75.0 bits;  conditional E-value: 2.2e-23
   TIGR03265  18 talkdislsvkkgelvclLGPsGCGkttLLriiaGLekqdaGaillggrditrlppqkrdyGivfqsYaLfPnltvaeniayGLknkklkreevaerveelLelvglsgsee....kyPgqlsGGqqqrvaLaralalsPglLLLDePlsaLDakvrekLreelkklqrklgvttimvthdqeealslaDrivvmnkg.kieqvgtP 219
                  +l+ i+lsv+ gelv ++GP GCGk++LL ++ G   + aGa+++ g  ++  p qk          a   n t++eni +G    +   + v +  +   ++  l+  ++         lsGGqqqr+ Lara     +++LLD+ lsa+Da+v +++ +e  +     + t ++vth     l  a ++vvm kg  i  v+ P
  MMETSP1137-20121227|4105_1 746 YTLRGIELSVSPGELVLVVGPTGCGKSSLLSALLGDVPRVAGAVAMRGT-VSYCP-QK----------AWVCNTTLRENILFGSAFDESRYNAVIAACALGPDIAMLPAGDRteigEKGVNLSGGQQQRLNLARACYAHTDIVLLDDVLSAVDAHVGQHIYNECIHGF-LASRTRVLVTHSVALTLPRASKVVVMTKGgGIAAVAPP 939
                 5799*******************************9999*****99884.56555.44..........6779***********88777766666666666556666655444111123568*****************************************965422.2356899******99999********986156666555 PP

  == domain 2    score: 25.0 bits;  conditional E-value: 3.4e-08
   TIGR03265   24 slsvkkgelvclLGPsGCGkttLLriiaGLekqdaGaillggrditrlppq..krdyGivfqsYaLfP.....nl.tva..eniayGLknkklkreevaerveelLelvglsgseekyPgqlsGGqqqrvaLaralalsPglLLLDePlsaLD....akvrekLreelkklqrklgvttimvthdqeealslaDrivvmnkgkieqvgtPeeiY 223 
                   +sv +     ++G  G Gk++L  ++  + + ++G+i++gg d + +p q  +    i+ q  +Lf      nl  v+  e +a  L    l r+  + +v+ +   +gl+++ +   g ls G +q v ++ral  + ++LL+De  +++D    a++++ Lr++++      g tti+    +   +++ +r+ v+ +g +    +P+ + 
  MMETSP1137-20121227|4105_1 1404 TFSVPAFTRCGVVGRTGAGKSSLAVALFRVVELSSGKIVIGGVDHACVPLQtlRSRMSIIQQEPTLFRgtlryNLmPVEsgEPLADELLWAALRRAGLEVKVRAM--PLGLDHVLSEGGGNLSAGERQLVCMTRALLKRASILLMDEATASVDhetdARIQDMLRSDFC------GNTTILTVAHRLHTVMFYERVLVLGAGAVLEHDAPHALL 1609
                  555555556678899999999999999999999999999999999988876223468899999999962222222123311335555666777777888888776..579999999999******************************99862222555555555554......666766554455667788999999999999888887765 PP

>> TIGR03864  PQQ_ABC_ATP: ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0   2.5e-05    0.0016      16      63 ..     747     794 ..     742     804 .. 0.89
   2 !   18.1   0.0   4.8e-06   0.00031     128     208 ..     850     930 ..     824     940 .. 0.85
   3 !   65.2   0.1     2e-20   1.3e-18      12     225 ..    1395    1614 ..    1382    1619 .. 0.85

  Alignments for each domain:
  == domain 1    score: 15.8 bits;  conditional E-value: 2.5e-05
   TIGR03864  16 alddvsltvakgefvaLLGpnGaGkstLfslltrLyeakegeikvaGl 63 
                 +l++++l+v++ge+v ++Gp G Gks L+s l + +   +g +++ G+
  MMETSP1137-20121227|4105_1 747 TLRGIELSVSPGELVLVVGPTGCGKSSLLSALLGDVPRVAGAVAMRGT 794
                 6899**************************999988888888888775 PP

  == domain 2    score: 18.1 bits;  conditional E-value: 4.8e-06
   TIGR03864 128 ekvreLnGGhrrrveiarallhePklLLlDeatvGLDiesraalveevrelvreeglsvLWathlvdeveaedrlvvlhkG 208
                 ek  +L+GG+++r+++ara   + +++LlD+    +D++  +++ +e  +   +++  vL +  +   + ++ ++vv+ kG
  MMETSP1137-20121227|4105_1 850 EKGVNLSGGQQQRLNLARACYAHTDIVLLDDVLSAVDAHVGQHIYNECIHGFLASRTRVLVTHSVALTLPRASKVVVMTKG 930
                 56679***************************************9887776667888888655555677888899999887 PP

  == domain 3    score: 65.2 bits;  conditional E-value: 2e-20
   TIGR03864   12 gkrralddvsltvakgefvaLLGpnGaGkstLfslltrLyeakegeikvaGldlrrapkeala.rlGvvfqqstlDldlsveqnlryhaa.......LhGlsraeaeerieealarlglaeraeekvreLnGGhrrrveiarallhePklLLlDeatvGLDiesraalveevrelvreeglsvLWathlvdeveaedrlvvlhkGkvlaqGaaaelaaeada 225 
                  ++  ++++++++v+  + + ++G  GaGks L   l r++e ++g+i + G+d    p + l+ r+ ++ q++tl    +++ nl    +       L   + ++a  +++     lgl +  +e   +L+ G+r+ v ++rall + ++LL+Deat+ +D e+ a++++++r+     + ++L   h ++ v   +r++vl  G vl + a+++l +++++
  MMETSP1137-20121227|4105_1 1395 ASAPVFNSLTFSVPAFTRCGVVGRTGAGKSSLAVALFRVVELSSGKIVIGGVDHACVPLQTLRsRMSIIQQEPTLFR-GTLRYNLMPVESgepladeLLWAALRRAGLEVKVRAMPLGLDHVLSEGGGNLSAGERQLVCMTRALLKRASILLMDEATASVDHETDARIQDMLRSDF-CGNTTILTVAHRLHTVMFYERVLVLGAGAVLEHDAPHALLTKQNG 1614
                  455678999******999*******************************************9746999999998854.5777777655440110001555556677777888888999*******************************************************998.57789****************************999999888764 PP

>> TIGR03410  urea_trans_UrtE: urea ABC transporter, ATP-binding protein UrtE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.7   0.0   1.2e-16     8e-15      15     225 ..     747     947 ..     743     951 .. 0.84
   2 !   43.1   0.0   1.1e-13   7.2e-12      12     216 ..    1396    1605 ..    1383    1619 .. 0.80

  Alignments for each domain:
  == domain 1    score: 52.7 bits;  conditional E-value: 1.2e-16
   TIGR03410  15 vlrdvslevekgevvavlGrngvGkttllkalvgllkvksGeielegeditklkpeervkaGiayvpqGreifpkltveenlelglealkkkekkipeei.....yelFPvlkem.lkRrgGdLsGGqqqqlaiaRaLvtePklllLDePteGiqPsiikei.ekvikelakekdlaillveqvldfaleladrylvlerGevvaegekeeldeekvk 225
                  lr+++l+v+ ge+v v+G  g Gk++ll al+g +++ +G+++++g+              ++y pq +  + + t +en+  g +  +++ +++++        ++ P+ +      +g +LsGGqqq l +aRa  ++  ++lLD+    +   + ++i ++ i+   ++   + +lv +++ ++l  a +++v+ +G  +a+ +  ++d+e ++
  MMETSP1137-20121227|4105_1 747 TLRGIELSVSPGELVLVVGPTGCGKSSLLSALLGDVPRVAGAVAMRGT--------------VSYCPQ-KAWVCNTTLRENILFGSAFDESRYNAVIAACalgpdIAMLPAGDRTeIGEKGVNLSGGQQQRLNLARACYAHTDIVLLDDVLSAVDAHVGQHIyNECIHGFLAS--RTRVLVTHSVALTLPRASKVVVMTKGGGIAAVAPPNADDEPIR 947
                 699****************************************99885..............89****.6677899**********999998666665442233347888876551567899***************************************944567766654..36689999******************98887777777666665 PP

  == domain 2    score: 43.1 bits;  conditional E-value: 1.1e-13
   TIGR03410   12 esevlrdvslevekgevvavlGrngvGkttllkalvgllkvksGeielegeditklkpeervkaGiayvpqGreifpkltveenlelglealkkk........ekkipeeiyelFPv.lkemlkRrgGdLsGGqqqqlaiaRaLvtePklllLDePteGiqPsiikeiekvikelakekdlaillveqvldfaleladrylvlerGevvaegek 216 
                  ++ v+++++++v++     v+Gr g+Gk++l  al  +++ +sG+i + g d  +  p +  ++ ++ + q  ++f   t + nl+ + +  + +        +++  e      P+ l+++l+  gG+Ls G +q + ++RaL+++  +ll+De t  +     + i++++++    ++ +il v + l+ ++   +r+lvl  G v+++++ 
  MMETSP1137-20121227|4105_1 1396 SAPVFNSLTFSVPAFTRCGVVGRTGAGKSSLAVALFRVVELSSGKIVIGGVDH-ACVPLQTLRSRMSIIQQEPTLFR-GTLRYNLMPVESGEPLAdellwaalRRAGLEVKVRAMPLgLDHVLSEGGGNLSAGERQLVCMTRALLKRASILLMDEATASVDHETDARIQDMLRS-DFCGNTTILTVAHRLHTVMF-YERVLVLGAGAVLEHDAP 1605
                  4568999*******************************************995.56788899999999999888875.4777777655444433322444444444445555566655999****************************************9999999999886.44578999999999997775.789999999999887665 PP

>> TIGR01277  thiQ: thiamine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.0     1e-05   0.00064      17      59 ..     751     793 ..     743     817 .. 0.84
   2 !   30.5   0.0   8.6e-10   5.5e-08     128     205 ..     854     930 ..     848     937 .. 0.87
   3 !   47.2   0.0   6.8e-15   4.4e-13      19     207 ..    1405    1599 ..    1385    1604 .. 0.82

  Alignments for each domain:
  == domain 1    score: 17.2 bits;  conditional E-value: 1e-05
   TIGR01277  17 fdlsveaGervailGesGaGkstllnliaGflepasGeikvnd 59 
                  +lsv+ Ge v ++G++G Gks+ll+ + G +  + G++ + +
  MMETSP1137-20121227|4105_1 751 IELSVSPGELVLVVGPTGCGKSSLLSALLGDVPRVAGAVAMRG 793
                 689****************************999999998866 PP

  == domain 2    score: 30.5 bits;  conditional E-value: 8.6e-10
   TIGR01277 128 elsGGqrqrvalarclvrekpillldepfsaldpklreemlalvkkladekkltlllvthslsdaaaiasqvvvvedG 205
                 +lsGGq+qr+ lar    +  i+lld+ +sa+d ++ + +     +      +t +lvths+      as+vvv+++G
  MMETSP1137-20121227|4105_1 854 NLSGGQQQRLNLARACYAHTDIVLLDDVLSAVDAHVGQHIYNECIHGF-LASRTRVLVTHSVALTLPRASKVVVMTKG 930
                 79************999*********************9987544433.3467899****************999886 PP

  == domain 3    score: 47.2 bits;  conditional E-value: 6.8e-15
   TIGR01277   19 lsveaGervailGesGaGkstllnliaGflepasGeikvndkdhtrsa..pyerpvsmlfqennlfahltvrqni.....glGlkpglklnavqke..kvedvarqvGiadylerlpeelsGGqrqrvalarclvrekpillldepfsaldpklreemlalv.kkladekkltlllvthslsdaaaiasqvvvvedGki 207 
                  +sv a  r  ++G +GaGks+l   +   +e  sG+i + ++dh  ++    +  +s++ qe  lf   t+r n+     g  l   l  +a+++   +v+  a  +G+++ l    ++ls G+rq v ++r l++   ill+de  +++d+     +  ++ +  +   + t+l v+h+l+ +    ++v+v+  G +
  MMETSP1137-20121227|4105_1 1405 FSVPAFTRCGVVGRTGAGKSSLAVALFRVVELSSGKIVIGGVDHACVPlqTLRSRMSIIQQEPTLFRG-TLRYNLmpvesGEPLADELLWAALRRAglEVKVRAMPLGLDHVLSEGGGNLSAGERQLVCMTRALLKRASILLMDEATASVDHETDARIQDMLrSDFCG--NTTILTVAHRLHTV-MFYERVLVLGAGAV 1599
                  5677888999************99999999**************887622567789**********75.78888733333456888999999999822455568889********************************************99887776655155665..5799*****99866.46788888888876 PP

>> TIGR02142  modC_ABC: molybdate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.3   0.1   1.4e-08     9e-07     126     213 ..     849     936 ..     745     954 .. 0.70
   2 !   64.1   0.2   4.5e-20   2.9e-18      16     224 ..    1403    1613 ..    1393    1637 .. 0.83

  Alignments for each domain:
  == domain 1    score: 26.3 bits;  conditional E-value: 1.4e-08
   TIGR02142 126 eRlpgkLsGGekqRvaigRAlLssPeLLlmDePLaaLDekrkkeilPyLerlsaelki.PilyvsHsldevarladrvvvledGr.vkaa 213
                   +  +LsGG +qR  ++RA  ++ +++l+D+ L+a+D +  ++i  y e ++  l     ++v Hs+   +  a +vvv+ +G  ++a 
  MMETSP1137-20121227|4105_1 849 GEKGVNLSGGQQQRLNLARACYAHTDIVLLDDVLSAVDAHVGQHI--YNECIHGFLASrTRVLVTHSVALTLPRASKVVVMTKGGgIAAV 936
                 445568************************************999..8899998776515699******9999999*9999887415554 PP

  == domain 2    score: 64.1 bits;  conditional E-value: 4.5e-20
   TIGR02142   16 vdlelpgkgvtalFGrsGsGktslirliaGLtrpdegeivldgevlqdsrkkiilppekRrvgyvFqeArLFpHlsvrenL...rYGlkrar....aeerrisee.kviel.LgiehLleRlpgkLsGGekqRvaigRAlLssPeLLlmDePLaaLDekrkkeilPyLerlsaelkiPilyvsHsldevarladrvvvledGrvkaagkleevlaskd 224 
                  + +++p+  ++++ Gr G+Gk+sl  ++  ++ +++g+iv+ g      ++ + l + + r++++ qe +LF   + r nL   + G   a+    a+ rr+  e kv ++ Lg++h+l+   g+Ls Ge+q v ++RAlL +  +LlmDe  a++D++  + i   L++     +  il v+H l+ v  + +rv+vl +G v  + +++++l++++
  MMETSP1137-20121227|4105_1 1403 LTFSVPAFTRCGVVGRTGAGKSSLAVALFRVVELSSGKIVIGGVD----HACVPLQTLRSRMSIIQQEPTLFRG-TLRYNLmpvESGEPLADellwAALRRAGLEvKVRAMpLGLDHVLSEGGGNLSAGERQLVCMTRALLKRASILLMDEATASVDHETDARIQDMLRSD-FCGNTTILTVAHRLHTVM-FYERVLVLGAGAVLEHDAPHALLTKQN 1613
                  57899************************************9974....4568999****************75.67888832234554444222245566654425555579***************************************************9999863.3446789********996.78***********99999888877654 PP

>> TIGR00954  3a01203: peroxysomal long chain fatty acyl transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.6   0.0   1.3e-18   8.6e-17     462     626 ..     741     897 ..     693     916 .. 0.80
   2 !   32.9   0.0     8e-11   5.1e-09     450     653 ..    1380    1595 ..    1371    1598 .. 0.78

  Alignments for each domain:
  == domain 1    score: 58.6 bits;  conditional E-value: 1.3e-18
   TIGR00954 462 tPegdvlieeLsfevksGnhlLiiGPnGcGKsslfRilgelWPvygglltkpeegklFyvPqrPYmslgtlRdqiiYPdssedfkergl.sdkdL...eqiLeevkLedllereggwdavqdWkdvLsgGekqRiamARlfyHkPkfavLDEctsAvsvdvEdklyela 626
                 tP  +  +  +++ v  G+ +L++GP GcGKssl   l +  P ++g      +g + y Pq+ ++ + tlR+ i++  + ++ +   +     L   +++L   + +           + +    LsgG++qR+++AR  y +   ++LD+  sAv   v +++y+++
  MMETSP1137-20121227|4105_1 741 TPRPHYTLRGIELSVSPGELVLVVGPTGCGKSSLLSALLGDVPRVAGAV--AMRGTVSYCPQKAWVCNTTLRENILFGSAFDESRYNAViAACALgpdIAMLPAGDRT----------EIGEKGVNLSGGQQQRLNLARACYAHTDIVLLDDVLSAVDAHVGQHIYNEC 897
                 666667777888999*******************988777778888865..56899*********************9988877655330333331112333333333..........344444469****************************************98 PP

  == domain 2    score: 32.9 bits;  conditional E-value: 8e-11
   TIGR00954  450 dngikfeniplvtP.egdvlieeLsfevksGnhlLiiGPnGcGKsslfRilgelWPvyg.............glltkpeegklFyvPqrPYmslgtlRdqiiYPdssedfkerglsdkdLeqiLeevkLedlle.reggwdav.qdWkdvLsgGekqRiamARlfyHkPkfavLDEctsAvsvdvEdklyelakev...gitllsvshrksLwkyHeylLkld 653 
                  d +i fe + +  P +   + ++L+f v+  +   ++G  G GKssl   l  +  + +             +   +  ++++  + q P + +gtlR  ++  +s e      l d+ L + L    Le  ++    g+d v  +    Ls Ge+q + m R +  +    ++DE+t+ v  + + ++ +++++    + t+l+v+hr   + ++e +L l+
  MMETSP1137-20121227|4105_1 1380 DPTITFESVCMKYPtASAPVFNSLTFSVPAFTRCGVVGRTGAGKSSLAVALFRVVELSSgkiviggvdhacvP--LQTLRSRMSIIQQEPTLFRGTLRYNLMPVESGE-----PLADELLWAALRRAGLEVKVRaMPLGLDHVlSEGGGNLSAGERQLVCMTRALLKRASILLMDEATASVDHETDARIQDMLRSDfcgNTTILTVAHRLHTVMFYERVLVLG 1595
                  66899*********5556789*************************855555554444445555567665333..3345678888*************9987545544.....4567777777777777654431456777662566779****************************************999974344899*******99999999888765 PP

>> TIGR01186  proV: glycine betaine/L-proline transport ATP binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.7   0.0    0.0007     0.045      10      39 ..     749     778 ..     744     797 .. 0.81
   2 !   35.1   0.0   2.6e-11   1.7e-09     129     214 ..     854     939 ..     850     945 .. 0.88
   3 !   46.1   0.0   1.2e-14   7.6e-13      24     219 ..    1415    1610 ..    1396    1617 .. 0.80

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 0.0007
   TIGR01186  10 ndvdleieeGeiiviiGlsGsGkstlvrll 39 
                 + ++l++  Ge++ ++G++G+Gks+l+  l
  MMETSP1137-20121227|4105_1 749 RGIELSVSPGELVLVVGPTGCGKSSLLSAL 778
                 6789********************998766 PP

  == domain 2    score: 35.1 bits;  conditional E-value: 2.6e-11
   TIGR01186 129 elsGGmqqrvGlaralaaePdlllmdeafsaldPlirdelqdelvklqkklqktivfithdldealrlgdrivilka.GeivqvGtP 214
                 +lsGG+qqr+ lara  a+ d++l+d+ +sa+d  + +++ +e ++     ++t v++th +  +l  + ++v++ + G i  v  P
  MMETSP1137-20121227|4105_1 854 NLSGGQQQRLNLARACYAHTDIVLLDDVLSAVDAHVGQHIYNECIHGF-LASRTRVLVTHSVALTLPRASKVVVMTKgGGIAAVAPP 939
                 79*****************************************98754.5689*************999999999661567666665 PP

  == domain 3    score: 46.1 bits;  conditional E-value: 1.2e-14
   TIGR01186   24 iiGlsGsGkstlvrllnrliePtaGkilidGediaeisdaelrevrrkkiamviqkialfPhmtildni...slglellk...ideqerkekalealkl..vdleeyedryPdelsGGmqqrvGlaralaaePdlllmdeafsaldPlirdelqdelvklqkklqktivfithdldealrlgdrivilkaGeivqvGtPdeilr 219 
                  ++G +G+Gks+l   l r++e ++Gki i G+d a +  + l    r +++++ q+ +lf   t+  n+   + g  l++   +++ +r       ++   ++l++   +   +ls G +q v + ral     +llmdea +++d  +   +qd l   +   + ti+ ++h l   +   +r+ +l aG ++   +P  +l+
  MMETSP1137-20121227|4105_1 1415 VVGRTGAGKSSLAVALFRVVELSSGKIVIGGVDHACVPLQTL----RSRMSIIQQEPTLFR-GTLRYNLmpvESGEPLADellWAALRRAG-LEVKVRAmpLGLDHVLSEGGGNLSAGERQLVCMTRALLKRASILLMDEATASVDHETDARIQDMLRS-DFCGNTTILTVAHRLHTVM-FYERVLVLGAGAVLEHDAPHALLT 1610
                  79******************************9999888888....899999999999985.45555541113344443311133333332.222233312577899999999*****************************************98765.567789*********8766.789**********99999988875 PP

>> TIGR03608  L_ocin_972_ABC: putative bacteriocin export ABC transporter, lactococcin 972 group
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0   3.7e-05    0.0024      13      47 ..     747     782 ..     739     815 .. 0.78
   2 !   22.5   0.0   2.2e-07   1.4e-05     131     197 ..     851     917 ..     843     927 .. 0.88
   3 !   52.1   0.0   1.9e-16   1.2e-14      11     204 ..    1397    1592 ..    1387    1594 .. 0.82

  Alignments for each domain:
  == domain 1    score: 15.2 bits;  conditional E-value: 3.7e-05
   TIGR03608  13 ilkklslkiekGelvaivGesGsGKstlLnil.gll 47 
                  l+ ++l+++ Gelv +vG  G+GKs lL  l g +
  MMETSP1137-20121227|4105_1 747 TLRGIELSVSPGELVLVVGPTGCGKSSLLSALlGDV 782
                 68899************************7541444 PP

  == domain 2    score: 22.5 bits;  conditional E-value: 2.2e-07
   TIGR03608 131 kiyelsgGekqRvalarillkeselilADEPtgsLDkknreevlellkelkeegktiiivtHdpeva 197
                 k  +lsgG++qR+ lar+   +++++l D+  +++D++  +++ +   +   + +t ++vtH+ +++
  MMETSP1137-20121227|4105_1 851 KGVNLSGGQQQRLNLARACYAHTDIVLLDDVLSAVDAHVGQHIYNECIHGFLASRTRVLVTHSVALT 917
                 5568*****************************************99999999*********99875 PP

  == domain 3    score: 52.1 bits;  conditional E-value: 1.9e-16
   TIGR03608   11 keilkklslkiekGelvaivGesGsGKstlLnilgllekkdsgkvilegkekaklkskkaskllreklgylFqnfaLlenetveenlel.....alklkkkskkekek..kkkevlekvglekklkkkiyelsgGekqRvalarillkeselilADEPtgsLDkknreevlellkelkeegktiiivtHdpevaekadrvi 204 
                    ++++l +++ +     +vG+ G+GKs l   l ++ + +sgk+++ g +    +     + lr++++ + q+ +L    t+++nl+      +l+ + +    ++   ++k     +gl++ l++   +ls Ge+q v + r+llk ++++l DE t+s+D+++ + + ++l++    ++ti+ v H  +     +rv+
  MMETSP1137-20121227|4105_1 1397 APVFNSLTFSVPAFTRCGVVGRTGAGKSSLAVALFRVVELSSGKIVIGGVD----HACVPLQTLRSRMSIIQQEPTLF-RGTLRYNLMPvesgePLADELLWAALRRAglEVKVRAMPLGLDHVLSEGGGNLSAGERQLVCMTRALLKRASILLMDEATASVDHETDARIQDMLRSDFCGNTTILTVAHRLHTVMFYERVL 1592
                  568999999999999************************************....55677888999999999999988.579999996312222333333333333330033444556788999999**************************************************************988777666665 PP

>> TIGR00968  3a0106s01: sulfate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.7   0.3   3.4e-17   2.2e-15      15     222 ..     747     945 ..     743     951 .. 0.80
   2 !   33.6   0.0   9.2e-11   5.9e-09      14     219 ..    1398    1609 ..    1383    1616 .. 0.78

  Alignments for each domain:
  == domain 1    score: 54.7 bits;  conditional E-value: 3.4e-17
   TIGR00968  15 alddvdlevktGslvallGpsGsGkstllrviaGlekpdsGrilleGrdvtrvkvrdreiGfvfqhyalfkhltvrdniafGleirkkdkakikakve..ellelv...qleklgdrypsqlsGGqrqrvalaralavepqvllldepfgaldakvrkelrawlrklhdev.kvttvfvthdqeealevadrivvlekGkieqvgsaeevydep 222
                 +l  ++l+v  G+lv ++Gp+G Gks+ll ++ G   + +G + ++G+           + +  q+ a     t+r+ni fG        +++ a       + ++   + +++g++   +lsGGq+qr+ lara   + +++lld+ ++a+da+v +++ +    +h  + + t v+vth  + +l  a ++vv+ kG  + + ++ +  dep
  MMETSP1137-20121227|4105_1 747 TLRGIELSVSPGELVLVVGPTGCGKSSLLSALLGDVPRVAGAVAMRGT-----------VSYCPQK-AWVCNTTLRENILFGSAFDESRYNAVIAACAlgPDIAMLpagDRTEIGEK-GVNLSGGQQQRLNLARACYAHTDIVLLDDVLSAVDAHVGQHIYN--ECIHGFLaSRTRVLVTHSVALTLPRASKVVVMTKGGGIAAVAPPNADDEP 945
                 57789*****************************99999999999996...........4444444.566788*********99986655555544431133333311145566665.567************************************99855..667877625799**********************9877777777766766 PP

  == domain 2    score: 33.6 bits;  conditional E-value: 9.2e-11
   TIGR00968   14 qalddvdlevktGslvallGpsGsGkstllrviaGlekpdsGrilleGrdvtrvkvr..dreiGfvfqhyalfkhltvrdn...iafGleir..kkdkakikakveellel..vqleklgdrypsqlsGGqrqrvalaralavepqvllldepfgaldakvrkelrawlrklhdevkvttvfvthdqeealevadrivvlekGkieqvgsaeevy 219 
                   +++++ ++v+     +++G +G+Gks+l  ++  + +  sG+i++ G d + v ++  + ++ ++ q+ +lf+  t+r n   +  G  +      +a  +a +e  ++   ++l+++ +    +ls G+rq v ++ral     +ll+de  +++d +    ++  lr   d    tt++    +  ++   +r+ vl  G + + ++++ + 
  MMETSP1137-20121227|4105_1 1398 PVFNSLTFSVPAFTRCGVVGRTGAGKSSLAVALFRVVELSSGKIVIGGVDHACVPLQtlRSRMSIIQQEPTLFRG-TLRYNlmpVESGEPLAdeLLWAALRRAGLEVKVRAmpLGLDHVLSEGGGNLSAGERQLVCMTRALLKRASILLMDEATASVDHETDARIQDMLRS--DFCGNTTILTVAHRLHTVMFYERVLVLGAGAVLEHDAPHALL 1609
                  567899999999999***********************************9999887324578999999999986.66666222334544442222233334433333332126899*****************************************9999999999997..5566777776656666777899********999999998765 PP

>> TIGR02211  LolD_lipo_ex: lipoprotein releasing system, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.0   4.1e-06   0.00026      20      67 ..     747     794 ..     734     804 .. 0.88
   2 !   21.0   0.0   6.5e-07   4.2e-05     135     217 ..     848     930 ..     838     933 .. 0.83
   3 !   46.2   0.1   1.3e-14   8.2e-13      17     219 ..    1396    1599 ..    1383    1601 .. 0.84

  Alignments for each domain:
  == domain 1    score: 18.4 bits;  conditional E-value: 4.1e-06
   TIGR02211  20 vlkgvsleiekgelvaivGssGsGkstllhllggldkptsGevllkGk 67 
                 +l+g++l+++ gelv +vG +G Gks ll  l g     +G v ++G 
  MMETSP1137-20121227|4105_1 747 TLRGIELSVSPGELVLVVGPTGCGKSSLLSALLGDVPRVAGAVAMRGT 794
                 799**************************9988866667899998885 PP

  == domain 2    score: 21.0 bits;  conditional E-value: 6.5e-07
   TIGR02211 135 inkkpselsGGerqrvaiaralvnkPklvladePtgnldkktakkifelllelnkekntallvvthdlela.kkldrvlelkdg 217
                 i +k  +lsGG++qr  +ara   + ++vl d+  + +d++  ++i++   +   +++t  ++vth   l   ++++v+ +++g
  MMETSP1137-20121227|4105_1 848 IGEKGVNLSGGQQQRLNLARACYAHTDIVLLDDVLSAVDAHVGQHIYNECIHGFLASRTR-VLVTHSVALTlPRASKVVVMTKG 930
                 6678899****************************************9877766666665.67899988852567777777665 PP

  == domain 3    score: 46.2 bits;  conditional E-value: 1.3e-14
   TIGR02211   17 eievlkgvsleiekgelvaivGssGsGkstllhllggldkptsGevllkGkelskls....sneraklrnkklGfiyqfhhlladftalenvamPlliskkskkeakerakellekvglekrinkkpselsGGerqrvaiaralvnkPklvladePtgnldkktakkifelllelnkekntallvvthdlelakkldrvlelkdgkl 219 
                  +  v++ + +++ +    ++vG +G+Gks l   l  + + +sG++++ G +   +      ++++ ++ +   f   + + l+  +  e +a  ll +   ++  + +  ++   +gl++ +++  ++ls Gerq v ++ral+++ +++l de t+ +d++t  +i ++l+  +   nt++l v+h l+ +   +rvl l  g +
  MMETSP1137-20121227|4105_1 1396 SAPVFNSLTFSVPAFTRCGVVGRTGAGKSSLAVALFRVVELSSGKIVIGGVDHACVPlqtlRSRMSIIQQEPTLFRGTLRYNLMPVESGEPLADELLWAALRRAGLEVKVRAM--PLGLDHVLSEGGGNLSAGERQLVCMTRALLKRASILLMDEATASVDHETDARIQDMLRS-DFCGNTTILTVAHRLHTVMFYERVLVLGAGAV 1599
                  45799*********************************************875544311113456666667677777777777888888888888888888877777776666..589**************************************************998875.77889*************99999999987765 PP

>> TIGR02769  nickel_nikE: nickel import ATP-binding protein NikE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   4.4e-05    0.0028      26      73 ..     747     794 ..     738     801 .. 0.92
   2 !   31.0   0.0   5.6e-10   3.6e-08     149     228 ..     853     931 ..     841     950 .. 0.85
   3 !   41.7   0.1   3.1e-13     2e-11      19     249 ..    1392    1619 ..    1381    1623 .. 0.80

  Alignments for each domain:
  == domain 1    score: 15.0 bits;  conditional E-value: 4.4e-05
   TIGR02769  26 vldnvslsleeGetvallGrsGaGkstlarlllGlekPakGevsfrGq 73 
                  l +++ls+  Ge v ++G +G+Gks l   llG      G v  rG 
  MMETSP1137-20121227|4105_1 747 TLRGIELSVSPGELVLVVGPTGCGKSSLLSALLGDVPRVAGAVAMRGT 794
                 5899******************************98889999999985 PP

  == domain 2    score: 31.0 bits;  conditional E-value: 5.6e-10
   TIGR02769 149 rqlsGGqlqriniaralavePklivldeavsnldlvlqasilellkklkqefGlaylfithdlrlvqkfaqrvlvldeGq 228
                  +lsGGq qr+n+ara  ++  +++ld+ +s +d +   +i +   +   ++  + +++th + l    a +v+v+ +G 
  MMETSP1137-20121227|4105_1 853 VNLSGGQQQRLNLARACYAHTDIVLLDDVLSAVDAHVGQHIYNECIHGFLAS-RTRVLVTHSVALTLPRASKVVVMTKGG 931
                 689*********************************9999987655544333.45789******************9985 PP

  == domain 3    score: 41.7 bits;  conditional E-value: 3.1e-13
   TIGR02769   19 gkkqrkavldnvslsleeGetvallGrsGaGkstlarlllGlekPakGevsfrGqdlakldrkqrkafrrdvqlvfqdsisavnp..r.ksvreiigePlrhltsldeserkariaellelvelrsev.ldklPrqlsGGqlqriniaralavePklivldeavsnldlvlqasilellkklkqefGlaylfithdlrlvqkfaqrvlvldeGqiveeikvaellsfkhpagrll 249 
                     + ++v++ + +s+ +    +++Gr+GaGks la  l  + + ++G++   G+d a +  +   ++r  + ++ q+ +  +    r + +    gePl + + l ++ r+a  +  ++++ l  ++ l     +ls G  q ++++ral  +  ++++dea +++d    a i ++l+     + +++l ++h l+ v  f +rvlvl  G ++e+     ll+ ++ + r l
  MMETSP1137-20121227|4105_1 1392 YPTASAPVFNSLTFSVPAFTRCGVVGRTGAGKSSLAVALFRVVELSSGKIVIGGVDHACVPLQ---TLRSRMSIIQQEPT-LFRGtlRyNLMPVESGEPLAD-ELLWAALRRAGLEVKVRAMPLGLDHvLSEGGGNLSAGERQLVCMTRALLKRASILLMDEATASVDHETDARIQDMLRS-DFCGNTTILTVAHRLHTV-MFYERVLVLGAGAVLEHDAPHALLTKQNGVLRGL 1619
                  556788999999********************************************9987654...45556666656543.332201202233445899987.45777888888888899999986651677889****************************************999986.4456688999******99.599*************998888888777777666 PP

>> TIGR02982  heterocyst_DevA: ABC exporter ATP-binding subunit, DevA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.1   1.9e-06   0.00012      20      52 ..     747     780 ..     739     794 .. 0.85
   2 !   29.7   0.0   1.5e-09   9.6e-08     134     217 ..     847     930 ..     789     932 .. 0.77
   3 !   39.4   0.0   1.6e-12     1e-10      38     218 ..    1417    1598 ..    1402    1600 .. 0.77

  Alignments for each domain:
  == domain 1    score: 19.6 bits;  conditional E-value: 1.9e-06
   TIGR02982  20 vlfdinleiepgeiviltGpsGsGkttllt.lig 52 
                  l  i+l+++pge+v++ Gp+G+Gk  ll+ l+g
  MMETSP1137-20121227|4105_1 747 TLRGIELSVSPGELVLVVGPTGCGKSSLLSaLLG 780
                 5889************************972444 PP

  == domain 2    score: 29.7 bits;  conditional E-value: 1.5e-09
   TIGR02982 134 rldykpedlsgGqkqrvaiaralvarPklvladePtaaldkksgrevvellqklareqgttillvthdnri.ldvadrivkmedG 217
                 ++  k  +lsgGq+qr+ +ara  a+ ++vl d+  +a+d++ g+++ +   +     + t +lvth   + l  a ++v m +G
  MMETSP1137-20121227|4105_1 847 EIGEKGVNLSGGQQQRLNLARACYAHTDIVLLDDVLSAVDAHVGQHIYNECIHGFL-ASRTRVLVTHSVALtLPRASKVVVMTKG 930
                 56678889**************************************9875544333.3557788999765426677777777766 PP

  == domain 3    score: 39.4 bits;  conditional E-value: 1.6e-12
   TIGR02982   38 GpsGsGkttlltligglrsvqeGelkvlgkelkgasekelvqvrrkiGyifqahnllesltaeqn...vrmalelkeklsakeakakaeel...leavgleerldykpedlsgGqkqrvaiaralvarPklvladePtaaldkksgrevvellqklareqgttillvthdnrildvadrivkmedGk 218 
                  G +G+Gk  l   +  + ++ +G++ + g +   ++   l+ +r ++ +i q+  l++  t + n   v+ +  l+++l  ++ +    e+      +gl++ l+    +ls G +q v ++ral +r +++l de ta++d+++   + ++l+      +ttil v+h    +   +r++ +  G 
  MMETSP1137-20121227|4105_1 1417 GRTGAGKSSLAVALFRVVELSSGKIVIGGVDHACVP---LQTLRSRMSIIQQEPTLFRG-TLRYNlmpVESGEPLADELLWAALRRAGLEVkvrAMPLGLDHVLSEGGGNLSAGERQLVCMTRALLKRASILLMDEATASVDHETDARIQDMLRSDFC-GNTTILTVAHRLHTVMFYERVLVLGAGA 1598
                  788888888887777777788888888777765554...56678888888888888765.33333122556666777766555544443331114568999**************************************************9998765.5799******999999999999888876 PP

>> TIGR03258  PhnT: 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.7   1.7   1.7e-18   1.1e-16      24     231 ..     748     945 ..     743     977 .. 0.80
   2 !   31.7   0.9   2.6e-10   1.7e-08       9     231 ..    1383    1612 ..    1379    1640 .] 0.73

  Alignments for each domain:
  == domain 1    score: 58.7 bits;  conditional E-value: 1.7e-18
   TIGR03258  24 lddlsleieaGellallGksGsGkttllravaGfvkadGGrllvadrdlthlppykrnlallvqnyalfphlkveenvafGlrar.kqskaliae.rvadalklvqlsdaaa..rlpaqlsGGqqqrvalaralvvrpdvllldeplsaldaqlrasvveelkalhrelpeltvlyvthdrdealvladkillmkeGslialGetralydap 231
                 l  + l + +Gel+ ++G++G+Gk++ll a+ G v    G +++ ++ +++ p  k          a     ++ en+ fG      + +a ia   +   + ++  +d ++  +   +lsGGqqqr+ lara   + d++lld+ lsa+da++ + + +e   +h  l   t + vth    +l  a k+ +m +G  ia   + +  d+p
  MMETSP1137-20121227|4105_1 748 LRGIELSVSPGELVLVVGPTGCGKSSLLSALLGDVPRVAGAVAMRGT-VSYCP-QK----------AWVCNTTLRENILFGSAFDeSRYNAVIAAcALGPDIAMLPAGDRTEigEKGVNLSGGQQQRLNLARACYAHTDIVLLDDVLSAVDAHVGQHIYNEC--IHGFLASRTRVLVTHSVALTLPRASKVVVMTKGGGIAAVAPPNADDEP 945
                 6778899*****************************999*9998876.55555.44..........34445677888888865441344566654145566777777777652245679****************************************995..8***************9999999*******998777666665555555 PP

  == domain 2    score: 31.7 bits;  conditional E-value: 2.6e-10
   TIGR03258    9 vvleslrvayga..rvvlddlsleieaGellallGksGsGkttllravaGfvkadGGrllvadrdlthlppy..krnlallvqnyalfphlkve........envafGlrarkqskaliaervadalklvqlsdaaarlpaqlsGGqqqrvalaralvvrpdvllldeplsaldaqlrasvveelkalhrelpeltvlyvthdrdealvladkillmkeGslialGetralydap 231 
                  + +es+ ++y +    v++ l++ + a     ++G++G+Gk++l  a+   v+ + G++++++ d + +p    +  ++++ q+ +lf     +        e +a  l      +a ++ +v  a   ++l  + ++   +ls G +q v ++ral  r  +ll+de  +++d +  a +++ l++  +   + t+l v+h r +++++ +++l++  G ++++  ++al  + 
  MMETSP1137-20121227|4105_1 1383 ITFESVCMKYPTasAPVFNSLTFSVPAFTRCGVVGRTGAGKSSLAVALFRVVELSSGKIVIGGVDHACVPLQtlRSRMSIIQQEPTLFRGTLRYnlmpvesgEPLADELLWAALRRAGLEVKVR-A-MPLGLDHVLSEGGGNLSAGERQLVCMTRALLKRASILLMDEATASVDHETDARIQDMLRS--DFCGNTTILTVAH-RLHTVMFYERVLVLGAGAVLEHDAPHALLTKQ 1612
                  5667777777541145899999999999999**********************************99999652266789999999999643222010000112233333333333333333332.2.124555666666789**********************************99999998876..456899******9.56778899******************997654 PP

>> TIGR03771  anch_rpt_ABC: anchored repeat-type ABC transporter, ATP-binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.3   0.1     8e-16   5.1e-14       1     199 [.     753     941 ..     753     956 .. 0.79
   2 ?    4.2   0.0      0.11       6.8      10      42 ..    1414    1446 ..    1406    1454 .. 0.91
   3 !   35.6   0.4   2.5e-11   1.6e-09     103     201 ..    1512    1610 ..    1495    1615 .. 0.89

  Alignments for each domain:
  == domain 1    score: 50.3 bits;  conditional E-value: 8e-16
   TIGR03771   1 lsvdkGellgllGpnGaGkttllrailglikvakGsvkvagkssrkgrreiGyvpqrhefawdfpidveqtvlsGragliGllrrpkkadfaavada.lervklteladrpvGelsGGqrqrvlvaralavkpslllldepftGldlpsqellvelfeelagegtailmtthdlaeavatcdrvvll.ngrvvadgapdql 199
                 lsv++Gel+ ++Gp G Gk++ll a+lg +++ +G v + g         + y pq+   aw     +++ +l G a     +     a     + a l   + te+ ++ v +lsGGq+qr+ +ara   +  ++lld+ ++ +d    +++ +  ++   + ++ +++th +a ++  +++vv++  g  +a  ap + 
  MMETSP1137-20121227|4105_1 753 LSVSPGELVLVVGPTGCGKSSLLSALLGDVPRVAGAVAMRGT--------VSYCPQK---AWVCNTTLRENILFGSAFDESRYNAVIAACALGPDIAmLPAGDRTEIGEKGV-NLSGGQQQRLNLARACYAHTDIVLLDDVLSAVDAHVGQHIYNECIHGFLASRTRVLVTHSVALTLPRASKVVVMtKGGGIAAVAPPNA 941
                 6899*********************************99995........9*****8...8**************9866555554444444443333134445566666666.6********************************998777666555555566777889********99999887624566776666554 PP

  == domain 2    score: 4.2 bits;  conditional E-value: 0.11
   TIGR03771   10 gllGpnGaGkttllrailglikvakGsvkvagk 42  
                  g++G  GaGk++l  a++ +++ + G++ ++g 
  MMETSP1137-20121227|4105_1 1414 GVVGRTGAGKSSLAVALFRVVELSSGKIVIGGV 1446
                  789**************************9985 PP

  == domain 3    score: 35.6 bits;  conditional E-value: 2.5e-11
   TIGR03771  103 lteladrpvGelsGGqrqrvlvaralavkpslllldepftGldlpsqellvelfeelagegtailmtthdlaeavatcdrvvllngrvvadgapdqlqd 201 
                  l ++ +   G+ls G+rq v ++ral  + s+ll+de  + +d  +  ++ +++++    +t+il ++h l   +     +vl  g v+   ap+ l  
  MMETSP1137-20121227|4105_1 1512 LDHVLSEGGGNLSAGERQLVCMTRALLKRASILLMDEATASVDHETDARIQDMLRSDFCGNTTILTVAHRLHTVMFYERVLVLGAGAVLEHDAPHALLT 1610
                  6677777789**********************************************9999***********9988776666777899999999998865 PP

>> TIGR01187  potA: polyamine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.3   0.1     2e-14   1.3e-12       2     183 ..     764     937 ..     763     949 .. 0.78
   2 !   37.2   0.1   5.8e-12   3.7e-10       2     191 ..    1416    1611 ..    1415    1638 .. 0.82

  Alignments for each domain:
  == domain 1    score: 45.3 bits;  conditional E-value: 2e-14
   TIGR01187   2 LGpsGsGkttlLrllaGleeldsGkilldgedvtevpaekrsvnvvfqsyaLfPhmtveenvafgLkmrkvpkaeikervkeaLelvqleefakrkpsqlsGGqrqrvalaravvkkPkiLLlDeplsaLDkkLrdqmqlelkalqekl.GitvvlvthDqeealtmsdriavlrkG.kiaqig 183
                 +Gp+G+Gk+ lL  l G     +G + + g+ v+  p +    n+  ++  Lf   ++++   +        +a       ++L   + +e+++ k  +lsGGq+qr+ lara   + +i+LlD+ lsa+D ++ +++ +e   ++  l   t vlvth     l  + +++v+ kG  ia ++
  MMETSP1137-20121227|4105_1 764 VGPTGCGKSSLLSALLGDVPRVAGAVAMRGT-VSYCPQKAWVCNTTLRENILFG--SAFDESRYNAV----IAACALGPDIAMLPAGDRTEIGE-KGVNLSGGQQQRLNLARACYAHTDIVLLDDVLSAVDAHVGQHIYNEC--IHGFLaSRTRVLVTHSVALTLPRASKVVVMTKGgGIAAVA 937
                 7999999999999999999999999999986.8888888888888777777775..44444444333....23333333346777777788876.5789****************************************996..5555514699******9999999*******9871455554 PP

  == domain 2    score: 37.2 bits;  conditional E-value: 5.8e-12
   TIGR01187    2 LGpsGsGkttlLrllaGleeldsGkilldgedvtevpae..krsvnvvfqsyaLf......Phmtve..envafgLkmrkvpkaeikervkeaLelvqleefakrkpsqlsGGqrqrvalaravvkkPkiLLlDeplsaLDkkLrdqmqlelkalqeklGitvvlvthDqeealtmsdriavlrkGkiaqigepeeiyee 191 
                  +G +G+Gk+ l   l  + el+sGki+++g+d + vp +  +  + ++ q+  Lf        m ve  e +a  L    + +a ++ +v+++     l+++ +    +ls G rq v + ra+ k+  iLL+De+ +++D++   ++q  l++  +  G t++l    +   +   +r+ vl  G ++  + p+ +  +
  MMETSP1137-20121227|4105_1 1416 VGRTGAGKSSLAVALFRVVELSSGKIVIGGVDHACVPLQtlRSRMSIIQQEPTLFrgtlryNLMPVEsgEPLADELLWAALRRAGLEVKVRAM--PLGLDHVLSEGGGNLSAGERQLVCMTRALLKRASILLMDEATASVDHETDARIQDMLRS--DFCGNTTILTVAHRLHTVMFYERVLVLGAGAVLEHDAPHALLTK 1611
                  7999********************************9652234577777887787222222357776336799999999*******9999998..35677777888899****************************************99986..668988887666667777889*************9999988665 PP

>> TIGR01166  cbiO: cobalt ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.0   0.0   6.1e-07   3.9e-05       7      54 ..     747     794 ..     742     816 .. 0.92
   2 !   16.3   0.0   1.7e-05    0.0011     127     189 ..     854     916 ..     844     917 .. 0.88
   3 !   43.9   0.1     6e-14   3.8e-12       6     185 ..    1398    1580 ..    1392    1584 .. 0.82

  Alignments for each domain:
  == domain 1    score: 21.0 bits;  conditional E-value: 6.1e-07
   TIGR01166   7 vlkglnlavergevlallGanGaGkstlllhlnGllrPksGkvlldGe 54 
                  l+g++l+v+ ge + ++G+ G+Gks ll+ l G +   +G+v + G+
  MMETSP1137-20121227|4105_1 747 TLRGIELSVSPGELVLVVGPTGCGKSSLLSALLGDVPRVAGAVAMRGT 794
                 699*********************************99******9997 PP

  == domain 2    score: 16.3 bits;  conditional E-value: 1.7e-05
   TIGR01166 127 llsgGekkrvaiagavalrpdvllldePtagldpa.GaeqlleilrklreeGktvvisthdvdl 189
                  lsgG+++r+ +a a   ++d++lld+  + +d++ G++   e ++++ ++ +  v+ th v+l
  MMETSP1137-20121227|4105_1 854 NLSGGQQQRLNLARACYAHTDIVLLDDVLSAVDAHvGQHIYNECIHGFLASRTR-VLVTHSVAL 916
                 69*******************************8648888899****9987666.567999987 PP

  == domain 3    score: 43.9 bits;  conditional E-value: 6e-14
   TIGR01166    6 evlkglnlavergevlallGanGaGkstlllhlnGllrPksGkvlldGeeldysrkgllelrkkvalvlqdpd.......dqlfaadvdedvafgplnlGlseaeverrvrealaavdisgleerpthllsgGekkrvaiagavalrpdvllldePtagldpaGaeqlleilrklreeGktvvisth 185 
                   v+++l ++v   ++ +++G+ GaGks l   l  ++   sGk++++G  +d+    l +lr +++++ q+p          l+  +  e +a  +l   l+ a +e +vr     ++++++ +     ls Ge++ v +  a+  r+ +ll+de ta++d +   ++ ++lr      +t++  +h
  MMETSP1137-20121227|4105_1 1398 PVFNSLTFSVPAFTRCGVVGRTGAGKSSLAVALFRVVELSSGKIVIGG--VDHACVPLQTLRSRMSIIQQEPTlfrgtlrYNLMPVESGEPLADELLWAALRRAGLEVKVRA--MPLGLDHVLSEGGGNLSAGERQLVCMTRALLKRASILLMDEATASVDHETDARIQDMLRSDFCGNTTILTVAH 1580
                  5889999****************************************9..79999***************996222111123344444455555566666666666666663..468999999999*********************************************9986666666666666 PP

>> TIGR03005  ectoine_ehuA: ectoine/hydroxyectoine ABC transporter, ATP-binding protein EhuA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.0     5e-05    0.0032      15      65 ..     747     797 ..     738     804 .. 0.84
   2 !   29.8   0.0   1.1e-09   7.1e-08     144     224 ..     852     931 ..     837     947 .. 0.84
   3 !   32.9   0.1   1.2e-10   7.9e-09      13     236 ..    1397    1610 ..    1383    1615 .. 0.77

  Alignments for each domain:
  == domain 1    score: 14.5 bits;  conditional E-value: 5e-05
   TIGR03005  15 vldglelevaaGekvaliGpsGsGkstilrilmtletideGsikvegeqly 65 
                  l g+el+v++Ge v ++Gp+G Gks++l  l+   +   G + + g  +y
  MMETSP1137-20121227|4105_1 747 TLRGIELSVSPGELVLVVGPTGCGKSSLLSALLGDVPRVAGAVAMRGTVSY 797
                 5899*************************9998766666666666666555 PP

  == domain 2    score: 29.8 bits;  conditional E-value: 1.1e-09
   TIGR03005 144 paqlsGGqkqrvaiaralalrpkvllfdevtsaldpelveevlnvlrrlasetdltmllvthemgfarefadrvlffdkGk 224
                  ++lsGGq+qr+ +ara   +  ++l+d+v sa+d ++ + + n   + +     t +lvth + ++   a +v+ + kG 
  MMETSP1137-20121227|4105_1 852 GVNLSGGQQQRLNLARACYAHTDIVLLDDVLSAVDAHVGQHIYNECIH-GFLASRTRVLVTHSVALTLPRASKVVVMTKGG 931
                 578**************************************9996554.233445889****************9999985 PP

  == domain 3    score: 32.9 bits;  conditional E-value: 1.2e-10
   TIGR03005   13 ltvldglelevaaGekvaliGpsGsGkstilrilmtletideGsikvegeqlyhmkgrkGklvpadekhlrkvrekiGmvfq...sfnlfphkt...vldnvteapvlvkGvaraeaekravelldmvGladkadalpaqlsGGqkqrvaiaralalrpkvllfdevtsaldpelveevlnvlrr.lasetdltmllvthemgfarefadrvlffdkGkiveeGkpdeifr 236 
                    v++ l ++v a  +  ++G +G+Gks++   l+ + +++ G+i + g     ++     l ++    +  ++++   +f+    +nl+p ++     d++  a ++  G+   e + ra+ l    Gl     +   +ls G++q v ++ral  r  +ll+de+t+++d e    + ++lr  ++   + t+l v+h++     f +rvl +  G + e+ +p+ ++ 
  MMETSP1137-20121227|4105_1 1397 APVFNSLTFSVPAFTRCGVVGRTGAGKSSLAVALFRVVELSSGKIVIGGVDHACVP-----L-QTLRSRMSIIQQEP-TLFRgtlRYNLMPVESgepLADELLWAALRRAGL---EVKVRAMPL----GLDHVLSEGGGNLSAGERQLVCMTRALLKRASILLMDEATASVDHETDARIQDMLRSdFCG--NTTILTVAHRLHT-VMFYERVLVLGAGAVLEHDAPHALLT 1610
                  4588999999999999******************************9665444444.....2.33333444444433.3333122688998876232456667777777666...567888876....9999999999*************************************99999999861454..5699******975.5799*****************98876 PP

>> TIGR03873  F420-0_ABC_ATP: proposed F420-0 ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.4     9e-06   0.00058      17      63 ..     748     794 ..     743     811 .. 0.90
   2 !   20.9   0.6   6.1e-07   3.9e-05     137     222 ..     854     940 ..     804     971 .. 0.81
   3 !   52.3   2.2   1.5e-16   9.7e-15      13     228 ..    1396    1612 ..    1385    1617 .. 0.86

  Alignments for each domain:
  == domain 1    score: 17.0 bits;  conditional E-value: 9e-06
   TIGR03873  17 vddvdvtaPaGaltgllGPnGsGkstllrllaGllapdaGevdlaga 63 
                 + ++++++ +G+l  ++GP G+Gks ll+ l G +   aG+v + g+
  MMETSP1137-20121227|4105_1 748 LRGIELSVSPGELVLVVGPTGCGKSSLLSALLGDVPRVAGAVAMRGT 794
                 67899999**********************************98875 PP

  == domain 2    score: 20.9 bits;  conditional E-value: 6.1e-07
   TIGR03873 137 tlsGGerqrvhlaralaqePklllldePtnhldvsaqlell.alvrelaaegvtvvvalhdlnlaasvcdhvvvld.gGrvvaaGppa 222
                  lsGG++qr +lara   +  ++lld+    +d +   ++  + ++   a+++  v+  h ++l+   + +vvv+  gG ++a  pp+
  MMETSP1137-20121227|4105_1 854 NLSGGQQQRLNLARACYAHTDIVLLDDVLSAVDAHVGQHIYnECIHGFLASRT-RVLVTHSVALTLPRASKVVVMTkGGGIAAVAPPN 940
                 59*******************************98755555156777766655.55567*******9999999986156777777775 PP

  == domain 3    score: 52.3 bits;  conditional E-value: 1.5e-16
   TIGR03873   13 grlivddvdvtaPaGaltgllGPnGsGkstllrllaGllapdaGevdlagadlkalsrrararrvalveqdsda.evplsvrdv.valGr.iPhrslfaadsdedaevvdralarvelssladrdlstlsGGerqrvhlaralaqePklllldePtnhldvsaqlellalvrelaaegvtvvvalhdlnlaasvcdhvvvldgGrvvaaGppaevltpe 228 
                  + ++ + ++ ++Pa +  g++G  G+Gks l   l  +++ + G++ ++g+d  +++ ++   r+++++q+ +     l+   + v  G  +    l+aa   +  ev  ra+   +l+++ +     ls Gerq v ++ral ++ ++ll+de t  +d ++   +  ++r+    ++t++   h l  ++++ ++v+vl++G v     p+ +lt++
  MMETSP1137-20121227|4105_1 1396 SAPVFNSLTFSVPAFTRCGVVGRTGAGKSSLAVALFRVVELSSGKIVIGGVDHACVPLQTLRSRMSIIQQEPTLfRGTLRYNLMpVESGEpLADELLWAALRRAGLEVKVRAMP-LGLDHVLSEGGGNLSAGERQLVCMTRALLKRASILLMDEATASVDHETDARIQDMLRSDFCGNTTILTVAHRLH-TVMFYERVLVLGAGAVLEHDAPHALLTKQ 1612
                  6678899999*********************************************999999999****9997641233333222133443145567899999999999888875.79********************************************************9999999999999996.67788**************9999999975 PP

>> TIGR03415  ABC_choXWV_ATP: choline ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.2   0.0   0.00087     0.056      42      82 ..     750     790 ..     739     808 .. 0.86
   2 !   33.3   0.0   8.4e-11   5.4e-09     162     249 ..     852     938 ..     846    1007 .. 0.88
   3 !   34.4   0.1   3.8e-11   2.5e-09      53     255 ..    1413    1611 ..    1401    1637 .. 0.81

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 0.00087
   TIGR03415  42 dasldveeGeilvlmGlsGsGkssllravnglnpvsrGkvl 82 
                 ++ l+v+ Ge+++++G +G Gkssll a+ g  p + G v 
  MMETSP1137-20121227|4105_1 750 GIELSVSPGELVLVVGPTGCGKSSLLSALLGDVPRVAGAVA 790
                 6789***********************99887776666665 PP

  == domain 2    score: 33.3 bits;  conditional E-value: 8.4e-11
   TIGR03415 162 vgelsGGmqqrvGlarafateadillmdePfsaldPliraklqdellelqkklkktivfvshdldealklGnriaimegGrivqlgtp 249
                   +lsGG qqr+ lara   ++di+l+d+ +sa+d  + +++ +e ++     ++t v+v+h +   l   +++ +m +G  +   +p
  MMETSP1137-20121227|4105_1 852 GVNLSGGQQQRLNLARACYAHTDIVLLDDVLSAVDAHVGQHIYNECIHGF-LASRTRVLVTHSVALTLPRASKVVVMTKGGGIAAVAP 938
                 568******************************************99743.457999*******9999999***99988766655555 PP

  == domain 3    score: 34.4 bits;  conditional E-value: 3.8e-11
   TIGR03415   53 lvlmGlsGsGkssllravnglnpvsrGkvlvkdedkevdvakcdeatlrklrtk.rvsmvfqkfallPWrtveenvafGlelsGvakaerrkrveeqlelvglaeWadkkvgelsGGmqqrvGlarafateadillmdePfsaldPliraklqdellelqkklkktivfvshdldealklGnriaimegGrivqlgtpeeivlk 255 
                  + ++G +G+Gkssl  a+ ++  +s Gk+ +   d+     ++ ++ +  ++++ ++     ++ l+P  +  e +a  l  + + +a    +v  +   +gl++   +  g+ls G +q v + ra+   a illmde  +++d    a++qd  l+     + ti+ v+h l   +   +r+ ++  G ++ +++p+ +++k
  MMETSP1137-20121227|4105_1 1413 CGVVGRTGAGKSSLAVALFRVVELSSGKIVIGGVDHACVPLQTLRSRMSIIQQEpTLFRGTLRYNLMPVES-GEPLADELLWAALRRAGLEVKV--RAMPLGLDHVLSEGGGNLSAGERQLVCMTRALLKRASILLMDEATASVDHETDARIQDM-LRSDFCGNTTILTVAHRLHTVM-FYERVLVLGAGAVLEHDAPHALLTK 1611
                  5678999************************9888877777777766666666523333456899999665.4555555555555555555555..44568****************************************************95.57777889**********9766.789****************988765 PP

>> TIGR01189  ccmA: heme ABC exporter, ATP-binding protein CcmA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.8   0.2   7.5e-14   4.8e-12      16     192 ..     748     920 ..     743     926 .. 0.74
   2 !   34.2   0.2   6.7e-11   4.3e-09      13     185 ..    1397    1580 ..    1389    1592 .. 0.73

  Alignments for each domain:
  == domain 1    score: 43.8 bits;  conditional E-value: 7.5e-14
   TIGR01189  16 leglsfelaaGealvveGpnGiGKttLLRilaGLlkpesGevelndkelaeqrdelaeellylgHldglKaeLsalEnLkfyaallqseqktveeale........kvgLsgledlpvaqLsAGqkrRlalarLllskaplWiLDEPttalDke.gvellaellaaHlargGivllathqdlglke 192
                 l+g+++++++Ge++ v+Gp G GK++LL  l G ++  +G v++ ++       ++  + +++  +       + +En+ f +a+ +s  ++v +a +         +g +        +Ls Gq++Rl lar   ++  + +LD+ + a+D++ g+++ +e ++  la    vl++   +l l +
  MMETSP1137-20121227|4105_1 748 LRGIELSVSPGELVLVVGPTGCGKSSLLSALLGDVPRVAGAVAMRGTV------SYCPQKAWVCNT-------TLRENILFGSAFDESRYNAVIAACAlgpdiamlPAGDRTEIGEKGVNLSGGQQQRLNLARACYAHTDIVLLDDVLSAVDAHvGQHIYNECIHGFLASRTRVLVTHSVALTLPR 920
                 7899*****************************************554......333455666644.......45555555555555444433333321110000033333333334568********************************9736999999********9999999888887665 PP

  == domain 2    score: 34.2 bits;  conditional E-value: 6.7e-11
   TIGR01189   13 rvlleglsfelaaGealvveGpnGiGKttLLRilaGLlkpesGevelndkelaeqrde.laeellylgHldg.....lKaeLsalEnLk......fyaallqseqktveealekvgLsgledlpvaqLsAGqkrRlalarLllskaplWiLDEPttalDkegvellaellaaHlargGivllath 185 
                    ++++l+f++ a     v+G+ G+GK++L   l  +++ +sG++ + + ++a +  + l+ ++  +  +++     l+ +L  +E  +       +aal + + ++v+     +gL+++      +LsAG ++ + ++r ll++a + ++DE t+++D+e+ ++++++l++    + ++l  +h
  MMETSP1137-20121227|4105_1 1397 APVFNSLTFSVPAFTRCGVVGRTGAGKSSLAVALFRVVELSSGKIVIGGVDHACVPLQtLRSRMSIIQQEPTlfrgtLRYNLMPVESGEpladelLWAALRR-AGLEVKVRAMPLGLDHVLSEGGGNLSAGERQLVCMTRALLKRASILLMDEATASVDHETDARIQDMLRSDFCGNTTILTVAH 1580
                  579********************************************9998876654304455666665554111114555555554331112212333333.333555555566777777777789*******************************************998765544444444 PP

>> TIGR02324  CP_lyasePhnL: phosphonate C-P lyase system protein PhnL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   0.0   8.7e-07   5.6e-05      23      68 ..     747     792 ..     742     810 .. 0.87
   2 !   15.9   0.0   2.3e-05    0.0015     150     186 ..     855     891 ..     851     914 .. 0.83
   3 !   38.3   0.1   3.2e-12     2e-10      20     208 ..    1396    1581 ..    1389    1591 .. 0.82

  Alignments for each domain:
  == domain 1    score: 20.5 bits;  conditional E-value: 8.7e-07
   TIGR02324  23 vlkevsleveaGelvalsGksGaGkstllkslyanYlpesgrilvr 68 
                 +l+ ++l+v+ Gelv + G++G Gks+ll +l ++    +g + +r
  MMETSP1137-20121227|4105_1 747 TLRGIELSVSPGELVLVVGPTGCGKSSLLSALLGDVPRVAGAVAMR 792
                 5789***************************998876666666655 PP

  == domain 2    score: 15.9 bits;  conditional E-value: 2.3e-05
   TIGR02324 150 fsGGekqRvniaraliadrPiLLLdePtasLdaanrk 186
                  sGG +qR+n+ara  a++ i+LLd+  +++da   +
  MMETSP1137-20121227|4105_1 855 LSGGQQQRLNLARACYAHTDIVLLDDVLSAVDAHVGQ 891
                 79************************99999987544 PP

  == domain 3    score: 38.3 bits;  conditional E-value: 3.2e-12
   TIGR02324   20 klpvlkevsleveaGelvalsGksGaGkstllkslyanYlpesgrilvrhege.ivdlvkaserevlevRrktigyvsqfLrviPRvsalevvaepllelGvereearakakellarlniperLWslaPatfsGGekqRvniaraliadrPiLLLdePtasLdaanrkvvvelikeakargaaligifhd 208 
                  + pv+++++++v a     + G++GaGks+l  +l++    +sg+i++   ++  v l ++   ++  ++++   +       +  v + e +a+ ll   + r+  ++k++++   l + +++ s      s Ge+q v ++ral++   iLL+de tas+d+ + + + +++++     ++++++ h 
  MMETSP1137-20121227|4105_1 1396 SAPVFNSLTFSVPAFTRCGVVGRTGAGKSSLAVALFRVVELSSGKIVIGGVDHaCVPLQTL-RSRMSIIQQEPTLFRGTLRYNLMPVESGEPLADELLWAALRRAGLEVKVRAM--PLGL-DHVLSEGGGNLSAGERQLVCMTRALLKRASILLMDEATASVDHETDARIQDMLRSDFCGNTTILTVAHR 1581
                  56899*****************************************998766515655555.5556666666666665555455557777888888888788888777777776..5666.4456667799**********************************************9999999999995 PP

>> TIGR01188  drrA: daunorubicin resistance ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.4   0.1     0.002      0.13       9      50 ..     748     789 ..     745     796 .. 0.83
   2 !   19.7   0.0   1.4e-06     9e-05     124     208 ..     854     938 ..     839    1010 .. 0.83
   3 !   46.2   0.1   1.2e-14   7.7e-13      10     212 ..    1401    1609 ..    1394    1621 .. 0.83

  Alignments for each domain:
  == domain 1    score: 9.4 bits;  conditional E-value: 0.002
   TIGR01188   9 vdgvnlkveegevfglLGPnGAGKtttikmLttllkPdsGta 50 
                 ++g++l+v+ ge++ ++GP G GK+ +++ L + ++  +G +
  MMETSP1137-20121227|4105_1 748 LRGIELSVSPGELVLVVGPTGCGKSSLLSALLGDVPRVAGAV 789
                 799***********************9998877666666655 PP

  == domain 2    score: 19.7 bits;  conditional E-value: 1.4e-06
   TIGR01188 124 tysgGmrrrlelaasliaqPevlfLDEPtiGLDprtrraiwdlieelkkegvtilltthyleeadkladrvaiidkGkiiaedtp 208
                 ++sgG+++rl+la++  a+ +++ LD+  + +D++  ++i++   +   +  t +l th +      a++v ++ kG  ia+ +p
  MMETSP1137-20121227|4105_1 854 NLSGGQQQRLNLARACYAHTDIVLLDDVLSAVDAHVGQHIYNECIHGFLASRTRVLVTHSVALTLPRASKVVVMTKGGGIAAVAP 938
                 58**************************************9877666677778888899999999999******99987776555 PP

  == domain 3    score: 46.2 bits;  conditional E-value: 1.2e-14
   TIGR01188   10 dgvnlkveegevfglLGPnGAGKtttikmLttllkPdsGtarvaGyDvvrepd.evRrsigvvpqkasvdedLtarenlellge..lyglpkkeaeeraeellel....velkeaadkkvktysgGmrrrlelaasliaqPevlfLDEPtiGLDprtrraiwdlieelkkegvtilltthyleeadkladrvaiidkGkiiaedtpeeLK 212 
                  ++++++v++ +  g++G  GAGK+ +   L  +++ +sG+ ++ G D    p  ++R +++++ q+ ++ +    ++ + + +   l +   ++a +ra   +++    + l +   +  +++s G r+ + ++++l+++ ++l +DE t  +D +t + i d++++    ++til  +h l+ + ++ +rv ++  G ++ +d+p+ L 
  MMETSP1137-20121227|4105_1 1401 NSLTFSVPAFTRCGVVGRTGAGKSSLAVALFRVVELSSGKIVIGGVDHACVPLqTLRSRMSIIQQEPTLFRGTLRYNLMPVESGepLADELLWAALRRAGLEVKVrampLGLDHVLSEGGGNLSAGERQLVCMTRALLKRASILLMDEATASVDHETDARIQDMLRSDFCGNTTILTVAHRLHTV-MFYERVLVLGAGAVLEHDAPHALL 1609
                  68999******************************************999985489***********99987444444433322234443333444444322222111267889999999***********************************************999999999999***988.788****************99885 PP

>> TIGR01184  ntrCD: nitrate ABC transporter, ATP-binding proteins C and D
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.6   0.2   6.4e-16   4.1e-14       1     192 [.     748     931 ..     748     937 .. 0.86
   2 !   25.0   0.0     4e-08   2.6e-06      15     191 ..    1414    1597 ..    1402    1602 .. 0.76

  Alignments for each domain:
  == domain 1    score: 50.6 bits;  conditional E-value: 6.4e-16
   TIGR01184   1 lkdvdleikkgefislighsgcgkstllnliaglekptsgavilegkeitepgpdrmvvfqnysllpwltvrenialavdavlrdlskserreiveehielvgl..reaadkrpeqlsggmkqrvaiaralsirpklllldepfgaldaltreelqekllkiveearvtvlmvthdvdealllsdrvvmltngp 192
                 l++++l+++ ge++ ++g +gcgks+ll  + g     +gav + g       p++  v         +t reni +      +  +       +  +i+++    r+    +  +lsgg +qr+ +ara     +++lld+ + a+da   +++ ++ ++ +  +r t ++vth v  +l  + +vv++t+g 
  MMETSP1137-20121227|4105_1 748 LRGIELSVSPGELVLVVGPTGCGKSSLLSALLGDVPRVAGAVAMRGTVS--YCPQKAWV-------CNTTLRENILFGSAFDESRYNAVIAACALGPDIAMLPAgdRTEIGEKGVNLSGGQQQRLNLARACYAHTDIVLLDDVLSAVDAHVGQHIYNECIHGFLASR-TRVLVTHSVALTLPRASKVVVMTKGG 931
                 578******************************99999*******9754..45666554.......45799****99888888888888888899999999855114445567889******************************************999887665.7899*******************996 PP

  == domain 2    score: 25.0 bits;  conditional E-value: 4e-08
   TIGR01184   15 slighsgcgkstllnliaglekptsgavilegkeit....epgpdrmvvfqnysllpwltvrenialavdavlrd....lskserreiveehiel..vglreaadkrpeqlsggmkqrvaiaralsirpklllldepfgaldaltreelqekllkiveearvtvlmvthdvdealllsdrvvmltng 191 
                   ++g +g gks+l   +  + + +sg +++ g +      +    rm ++q+   l   t r n++  v++  +     l  + rr+ +e ++    +gl +      ++ls g +q v ++ral  r  +ll+de   ++d  t   +q+ l   +   ++t+l v+h +   + + +rv++l +g
  MMETSP1137-20121227|4105_1 1414 GVVGRTGAGKSSLAVALFRVVELSSGKIVIGGVDHAcvplQTLRSRMSIIQQEPTLFRGTLRYNLM-PVESGEPLadelLWAALRRAGLEVKVRAmpLGLDHVLSEGGGNLSAGERQLVCMTRALLKRASILLMDEATASVDHETDARIQDMLRSDFC-GNTTILTVAHRLHTVM-FYERVLVLGAG 1597
                  589999999999988888888889999999887643111133467999999998888889998875.34433322001134455666666666542369999************************************************98866544.4679999***998655.56888888777 PP

>> TIGR03411  urea_trans_UrtD: urea ABC transporter, ATP-binding protein UrtD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.0   3.8e-06   0.00025      18      64 ..     748     794 ..     744     803 .. 0.92
   2 !   11.9   0.0   0.00042     0.027     139     219 ..     850     931 ..     839     937 .. 0.88
   3 !   40.1   0.0   1.1e-12     7e-11      19     222 ..    1401    1601 ..    1384    1611 .. 0.88

  Alignments for each domain:
  == domain 1    score: 18.6 bits;  conditional E-value: 3.8e-06
   TIGR03411  18 lndlslsveegelrviiGpnGaGkttllDvitGktrpdeGsvlfkgk 64 
                 l+ ++lsv++gel +++Gp G Gk+ ll ++ G +   +G v ++g+
  MMETSP1137-20121227|4105_1 748 LRGIELSVSPGELVLVVGPTGCGKSSLLSALLGDVPRVAGAVAMRGT 794
                 77899*******************************99***999875 PP

  == domain 2    score: 11.9 bits;  conditional E-value: 0.00042
   TIGR03411 139 kkaglLshGqkqwLeigmllvqepkllllDePvaGmtdee.tektaellkelakersvvvvehDmefvrelaekvtvlheGk 219
                 +k  +Ls Gq+q+L+++     +++++llD+  + + ++  ++   e ++    +r+ v+v h +      a+kv v+++G 
  MMETSP1137-20121227|4105_1 850 EKGVNLSGGQQQRLNLARACYAHTDIVLLDDVLSAVDAHVgQHIYNECIHGFLASRTRVLVTHSVALTLPRASKVVVMTKGG 931
                 66789***************************9999776515556899******************************9995 PP

  == domain 3    score: 40.1 bits;  conditional E-value: 1.1e-12
   TIGR03411   19 ndlslsveegelrviiGpnGaGkttllDvitGktrpdeGsvlfkgkdltklkeaei.arlGigRkfqkpsvfeeltvlenlelalkadksvlallfarlskeekerieevleligLeekadkkaglLshGqkqwLeigmllvqepkllllDePvaGmtdeetektaellke.lakersvvvvehDmefvrelaekvtvlheGkvla 222 
                  n+l++sv +     ++G  GaGk+ l  ++   ++ ++G++++ g d + ++ +++ +r+ i    q+p++f+  t + nl + +++ + + + l + + +++  +++  +  +gL++  ++  g+Ls G++q + ++  l++++++ll+De +a + +e  +++ ++l++   ++++++ v h ++ v  + e+v vl  G+vl 
  MMETSP1137-20121227|4105_1 1401 NSLTFSVPAFTRCGVVGRTGAGKSSLAVALFRVVELSSGKIVIGGVDHACVPLQTLrSRMSI--IQQEPTLFRG-TLRYNL-MPVESGEPLADELLWAALRRAGLEVKVRAMPLGLDHVLSEGGGNLSAGERQLVCMTRALLKRASILLMDEATASVDHETDARIQDMLRSdFCGNTTILTVAHRLHTVM-FYERVLVLGAGAVLE 1601
                  677788877777779*******************************9887775543155555..569*****85.899999.5778888888888888889999999999*************************************************999*****9975499*************996.66899********96 PP

>> TIGR02314  ABC_MetN: D-methionine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.0     0.099       6.3      20      49 ..     747     776 ..     735     795 .. 0.85
   2 !   20.8   0.1   5.3e-07   3.4e-05     139     217 ..     853     930 ..     837     937 .. 0.81
   3 !   46.6   0.1   7.6e-15   4.9e-13      21     226 ..    1400    1606 ..    1390    1617 .. 0.78

  Alignments for each domain:
  == domain 1    score: 3.5 bits;  conditional E-value: 0.099
   TIGR02314  20 aldnvslfvpkgqifgvigasgagkstlir 49 
                 +l  ++l v  g+++ v+g +g gks+l+ 
  MMETSP1137-20121227|4105_1 747 TLRGIELSVSPGELVLVVGPTGCGKSSLLS 776
                 68899**********************986 PP

  == domain 2    score: 20.8 bits;  conditional E-value: 5.3e-07
   TIGR02314 139 snlsggqkqrvaiaralasepkvllcdeatsaldpattqsilellkeinrrl.gltillithemdvvkricdevavidkg 217
                  nlsggq+qr+ +ara  ++  ++l d+  sa+d    q i +    i   l + t +l+th + +      +v v++kg
  MMETSP1137-20121227|4105_1 853 VNLSGGQQQRLNLARACYAHTDIVLLDDVLSAVDAHVGQHIYNEC--IHGFLaSRTRVLVTHSVALTLPRASKVVVMTKG 930
                 69*************************************998643..444441457788888888777777777777776 PP

  == domain 3    score: 46.6 bits;  conditional E-value: 7.6e-15
   TIGR02314   21 ldnvslfvpkgqifgvigasgagkstlircvnllekptsgavivdgkdlttlsnaelvkarrqigmifqhfnllssrtvf........gnvalplelentpkekikrkvtellalvglsdkkdsypsnlsggqkqrvaiaralasepkvllcdeatsaldpattqsilellkeinrrlgltillithemdvvkricdevavidkgeliekgtvs 226 
                  ++ +++ vp+ + +gv+g +gagks+l   +  + + +sg++++ g+d + +    l + r ++ +i q   l+     +        + +a  l  ++  +  ++ kv      +gl +       nls g++q v ++ral     +ll deat+++d  t   i ++l+  +   + til ++h ++ v    ++v v++ g ++e+++  
  MMETSP1137-20121227|4105_1 1400 FNSLTFSVPAFTRCGVVGRTGAGKSSLAVALFRVVELSSGKIVIGGVDHACVP---LQTLRSRMSIIQQEPTLFRGTLRYnlmpvesgEPLADELLWAALRRAGLEVKVRA--MPLGLDHVLSEGGGNLSAGERQLVCMTRALLKRASILLMDEATASVDHETDARIQDMLRS-DFCGNTTILTVAHRLHTVM-FYERVLVLGAGAVLEHDAPH 1606
                  5678899********************9998888889***********98775...5555777777777777664433330000000022333333344444445555544..4579999999999*********************************************97.566799**********996.6899***********99765 PP

>> TIGR02770  nickel_nikD: nickel import ATP-binding protein NikD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.2   0.0    0.0012     0.075       3      52 ..     749     794 ..     747     810 .. 0.84
   2 !   17.8   0.0   5.6e-06   0.00036     125     204 ..     854     932 ..     848     949 .. 0.85
   3 !   39.1   0.0   1.7e-12   1.1e-10       5     215 ..    1403    1610 ..    1399    1621 .. 0.76

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 0.0012
   TIGR02770   3 qdvnlslkrgkvlalvGesGsGksltalailglldkeltktsGeilldgk 52 
                 ++++ls+  g+++ +vG  G+Gks   +a+lg  +    +++G ++++g 
  MMETSP1137-20121227|4105_1 749 RGIELSVSPGELVLVVGPTGCGKSSLLSALLGDVP----RVAGAVAMRGT 794
                 5799********************99999998776....66666666664 PP

  == domain 2    score: 17.8 bits;  conditional E-value: 5.6e-06
   TIGR02770 125 elsGGmlqRvmialallleaplliaDePttdlDvvvqaevLklleelrekrglgillithDlgvvaeladevavmekGki 204
                 +lsGG  qR+ +a a  +++ +++ D+  +++D+ v  ++ ++  +    +  + +l+th ++     a +v+vm+kG  
  MMETSP1137-20121227|4105_1 854 NLSGGQQQRLNLARACYAHTDIVLLDDVLSAVDAHVGQHIYNECIHGFLASR-TRVLVTHSVALTLPRASKVVVMTKGGG 932
                 79*************************************9987654443333.4578*******************9965 PP

  == domain 3    score: 39.1 bits;  conditional E-value: 1.7e-12
   TIGR02770    5 vnlslkrgkvlalvGesGsGksltalailglldkeltktsGeilldgkelaal..alrgreialilqnPrsafnPlltikeqlletlkaleklskqakelivealeavgLeea........eevlkkypfelsGGmlqRvmialallleaplliaDePttdlDvvvqaevLklleelrekrglgillithDlgvvaeladevavmekGkivergtvkelfq 215 
                  + +s+     +++vG  G+Gks  a+a+  + +     +sG+i++ g + a +  +    ++++i q+P   f         l+  l+  e+ +  a el+ +al+++gLe          ++vl++   +ls G  q v +  all +a++l+ De t+ +D  + a++ ++l++     +++il ++h l  v  + + v+v+ +G ++e+  ++ l++
  MMETSP1137-20121227|4105_1 1403 LTFSVPAFTRCGVVGRTGAGKSSLAVALFRVVE----LSSGKIVIGGVDHACVplQTLRSRMSIIQQEPTL-FRG------TLRYNLMPVESGEPLADELLWAALRRAGLEVKvramplglDHVLSEGGGNLSAGERQLVCMTRALLKRASILLMDEATASVDHETDARIQDMLRSDF-CGNTTILTVAHRLHTVM-FYERVLVLGAGAVLEHDAPHALLT 1610
                  556666667799*****************9988....899******9998877555555678999999964.332......23333333444444444444444444444422111111116899999999*****************************************999844.56799*********996.6799************99988876 PP

>> TIGR01288  nodI: nodulation ABC transporter NodI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.3   0.3   5.5e-09   3.5e-07      24     222 ..     752     941 ..     746     948 .. 0.75
   2 !   38.9   1.5   1.6e-12     1e-10      19     228 ..    1399    1614 ..    1380    1626 .. 0.79

  Alignments for each domain:
  == domain 1    score: 27.3 bits;  conditional E-value: 5.5e-09
   TIGR01288  24 sftiaagecfgllgpngagkstiarlvlglispdegkitvlgepvpararlarakigvvpqfdnldreftvrenllvfgryfglstreieevipsl.lefarleskadvrv....adlsggmkrrltlaralindpqllildepttgldpha.rhliwerlrsllargktilltthlmeeaerlcdrlcvleagrkiaegrpdal 222
                  ++++ ge   ++gp g+gks++   +lg ++   g ++             r  +   pq      + t ren+l fg  f  s  +   +  +l  ++a l +   +++     +lsgg ++rl lara     ++++ld+  + +d h  +h+  e +  +la  +t +l th +  +     +++v+ +g  ia   p   
  MMETSP1137-20121227|4105_1 752 ELSVSPGELVLVVGPTGCGKSSLLSALLGDVPRVAGAVA------------MRGTVSYCPQKA-WVCNTTLRENIL-FGSAFDESRYNAVIAACALgPDIAMLPAGDRTEIgekgVNLSGGQQQRLNLARACYAHTDIVLLDDVLSAVDAHVgQHIYNECIHGFLAS-RTRVLVTHSVALTLPRASKVVVMTKGGGIAAVAPPNA 941
                 578999999999999999999999999998877666654............466677777754.446789****87.8999887765544444444258888877666555212268**********************************8356777889999986.5666677777666666788889999888887776555 PP

  == domain 2    score: 38.9 bits;  conditional E-value: 1.6e-12
   TIGR01288   19 vvndlsftiaagecfgllgpngagkstiarlvlglispdegkitvlgepvp.ararlarakigvvpqfdnldreftvrenllvfgryfglstreieevipsllefarleska...........dvrvadlsggmkrrltlaralindpqllildepttgldpharhliwerlrsllargktilltthlmeeaerlcdrlcvleagrkiaegrpdalideqig 228 
                  v n l+f++ a    g++g  gagks++a  ++ ++  + gki + g +      +  r+++ +++q  +l r  t r nl+       l    + ++    l  a le k                 +ls g ++ + ++ral++   +l++de t+ +d  +   i + lrs ++   til  +h +     + +r+ vl ag  +    p+al+ +q g
  MMETSP1137-20121227|4105_1 1399 VFNSLTFSVPAFTRCGVVGRTGAGKSSLAVALFRVVELSSGKIVIGGVDHAcVPLQTLRSRMSIIQQEPTLFR-GTLRYNLMPVESGEPLADELLWAA----LRRAGLEVKVramplgldhvlSEGGGNLSAGERQLVCMTRALLKRASILLMDEATASVDHETDARIQDMLRSDFCGNTTILTVAHRLHT-VMFYERVLVLGAGAVLEHDAPHALLTKQNG 1614
                  789********9999****************************988765541456789*********999976.599***997765555544333333....333333333311111110000333467999999999**************************************999999999998876.5789*********************99977 PP

>> TIGR03719  ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.7   0.0   4.3e-07   2.8e-05     340     477 ..     750     888 ..     743     913 .. 0.77
   2 !   14.0   0.0   4.7e-05     0.003     323     383 ..    1383    1445 ..    1371    1470 .. 0.82
   3 !   20.7   0.0   4.4e-07   2.8e-05     161     216 ..    1522    1580 ..    1506    1607 .. 0.81

  Alignments for each domain:
  == domain 1    score: 20.7 bits;  conditional E-value: 4.3e-07
   TIGR03719 340 dlsfklpkggivGviGpnGaGkstlfklitgkekpdsGelkiGetvklayvdqsrdalddnktvweeisdGldllklgkv.evnsrayvgrfnfkGadqqkkvg....elsGGernrvhlakllkeggnvllldePtndldve 477
                  +++++ +g +v v+Gp G+Gks l+  + g+    +G++ +  tv  +y  q+      n t+ e+i  G+   +      + + a     ++  a  + ++g    +lsGG+++r++la+    +++++lld+    +d +
  MMETSP1137-20121227|4105_1 750 GIELSVSPGELVLVVGPTGCGKSSLLSALLGDVPRVAGAVAMRGTV--SYCPQKA--WVCNTTLRENILFGSAFDESRYNaVIAACALGPDIAMLPAGDRTEIGekgvNLSGGQQQRLNLARACYAHTDIVLLDDVLSAVDAH 888
                 67899*************************************9997..6888864..5567888999988877665544404555555556666655555555422227*************************988777765 PP

  == domain 2    score: 14.0 bits;  conditional E-value: 4.7e-05
   TIGR03719  323 ievenlskafg..dklliddlsfklpkggivGviGpnGaGkstlfklitgkekpdsGelkiGe 383 
                  i +e+++ ++   +  +++ l+f++p+ +  Gv+G  GaGks l   +    +  sG++ iG 
  MMETSP1137-20121227|4105_1 1383 ITFESVCMKYPtaSAPVFNSLTFSVPAFTRCGVVGRTGAGKSSLAVALFRVVELSSGKIVIGG 1445
                  556666666641145689******************************************995 PP

  == domain 3    score: 20.7 bits;  conditional E-value: 4.4e-07
   TIGR03719  161 klsGGekrrvalcrlllekPdlllldePtnhldaesvaWlekflk.eykG..tvvavth 216 
                  +ls Ge++ v ++r ll++  +ll+de t  +d e+ a ++ +l+ ++ G  t++ v+h
  MMETSP1137-20121227|4105_1 1522 NLSAGERQLVCMTRALLKRASILLMDEATASVDHETDARIQDMLRsDFCGntTILTVAH 1580
                  68999999999999999999999999999999999999999888636877435566665 PP

>> TIGR03269  met_CoM_red_A2: methyl coenzyme M reductase system, component A2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.0   0.0     0.006      0.39      15      72 ..     747     804 ..     742     814 .. 0.78
   2 ?    6.2   0.0     0.011       0.7     168     248 ..     854     934 ..     837     944 .. 0.77
   3 !   29.6   0.3   8.5e-10   5.5e-08     302     516 ..    1402    1609 ..    1383    1615 .. 0.76

  Alignments for each domain:
  == domain 1    score: 7.0 bits;  conditional E-value: 0.006
   TIGR03269  15 vlknisleleeGevlGilGksGaGksvllhllrGldeyeptsGkiiyh..valcekcgyv 72 
                  l+ i+l +  Ge++ ++G +G+Gks ll  l G  + +   G +  +  v++c++  +v
  MMETSP1137-20121227|4105_1 747 TLRGIELSVSPGELVLVVGPTGCGKSSLLSALLG--DVPRVAGAVAMRgtVSYCPQKAWV 804
                 5889999999999999999999999999999877..445667776654337888877776 PP

  == domain 2    score: 6.2 bits;  conditional E-value: 0.011
   TIGR03269 168 dlsGGekqrvvlarqlakeplllladeptGtldpktaklvhealkeavkeedislvltshwpeviedlsdkaillekGeiv 248
                 +lsGG++qr+ lar    +  ++l d+   ++d +  + +++  +++  ++   +++t   +  +   s+  ++ + G i 
  MMETSP1137-20121227|4105_1 854 NLSGGQQQRLNLARACYAHTDIVLLDDVLSAVDAHVGQHIYNECIHGFLASRTRVLVTHSVALTLPRASKVVVMTKGGGIA 934
                 799999999999999877777777788899999999999999999998888888777766666666655555555555555 PP

  == domain 3    score: 29.6 bits;  conditional E-value: 8.5e-10
   TIGR03269  302 nvslevkekeifGlvGtsGaGkttlskilaGvleptsGevevrvGdewvdmtkkgvlerGrakkyiGllhqeyalyphrtvlenltea.iglelpdel...akrkavivlkavGfdeekakeildklpdelseGerhrvalaqvlikeprivildeptGtmdpitkvkvaesilkareeleetfvivshdmdfvlevcdraalmrdGkivkiGdpeeiv 516 
                  ++++ v      G+vG +GaGk++l+  l  v+e +sG++++  G   vd +    l+    +  + ++ qe +l+   t+  nl     g  l del   a r+a   +k+  +      ++l     +ls Ger  v +++ l+k   i+++de t ++d  t  ++++ +l++    + t + v+h +  v +  +r+ ++  G +++   p+ ++
  MMETSP1137-20121227|4105_1 1402 SLTFSVPAFTRCGVVGRTGAGKSSLAVALFRVVELSSGKIVIG-G---VDHACVP-LQ--TLRSRMSIIQQEPTLFRG-TLRYNLMPVeSGEPLADELlwaALRRAGLEVKVRAMP-LGLDHVLSEGGGNLSAGERQLVCMTRALLKRASILLMDEATASVDHETDARIQD-MLRSDFCGNTTILTVAHRLHTV-MFYERVLVLGAGAVLEHDAPHALL 1609
                  566667777778***************************8764.2...3333222.22..23345899*******975.5666775540344466666443445554444444333.345689999999*************************************99987.67777888999999***99877.567888888888888877776665 PP

>> TIGR01257  rim_protein: rim ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.0   9.5e-07   6.1e-05     962    1121 ..     764     915 ..     748     938 .. 0.77
   2 !   24.6   0.0   8.3e-09   5.4e-07     959    1141 ..    1413    1602 ..    1381    1615 .. 0.84

  Alignments for each domain:
  == domain 1    score: 17.8 bits;  conditional E-value: 9.5e-07
   TIGR01257  962 lghngagktttlsiltgllpptsgtvlvggkdietnldavrqslgmcpqhnilfhhltvaehilfyaqlkgrsweeaqlemeamled.....tglhhkrneeaqdlsgglqrklsvaiafvgdakvvvldeptsgvdpysrrsiwdl.llkyrsgrtiimsthhmd 1121
                  +g  g+gk++ ls l g +p  +g+v            a+r ++  cpq+  +    t+ e ilf + +    + +a +   a+  d     +g      e+  +lsgg q++l +a a    + +v+ld+  s vd +  + i++  +  + + rt ++ th + 
  MMETSP1137-20121227|4105_1  764 VGPTGCGKSSLLSALLGDVPRVAGAV------------AMRGTVSYCPQKAWVC-NTTLRENILFGSAFDES-RYNAVIAACALGPDiamlpAGDRTEIGEKGVNLSGGQQQRLNLARACYAHTDIVLLDDVLSAVDAHVGQHIYNEcIHGFLASRTRVLVTHSVA 915 
                  66677777777777777777777776............56778999***98765.6899******9888654.4455555555544411111566777788999****************************************9761556999********9875 PP

  == domain 2    score: 24.6 bits;  conditional E-value: 8.3e-09
   TIGR01257  959 taflghngagktttlsiltgllpptsgtvlvggkdie.tnldavrqslgmcpqhnilfhh.....lt.vaehilfyaqlkgrsweeaqlemeamledtglhhkrneeaqdlsgglqrklsvaiafvgdakvvvldeptsgvdpysrrsiwdlllkyrsgrtiimsthhmdeadllgdriaiisqgrlycs 1141
                    ++g  gagk++    l  ++  +sg +++gg d     l+++r  + +  q   lf       l  v     +  +l   +   a le++      gl h   e   +ls g ++ + ++ a++  a ++++de t+ vd  +   i d+l     g t i++  h   + ++ +r+ ++  g +   
  MMETSP1137-20121227|4105_1 1413 CGVVGRTGAGKSSLAVALFRVVELSSGKIVIGGVDHAcVPLQTLRSRMSIIQQEPTLFRGtlrynLMpVESGEPLADELLWAALRRAGLEVKVRAMPLGLDHVLSEGGGNLSAGERQLVCMTRALLKRASILLMDEATASVDHETDARIQDMLRSDFCGNTTILTVAHRLHTVMFYERVLVLGAGAVLEH 1602
                  45799********9999*****************976267**************99997511111321333334556788889999*******999*******************9999*********************************************99999999999999999998877655 PP

>> TIGR03522  GldA_ABC_ATP: gliding motility-associated ABC transporter ATP-binding subunit GldA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.7   0.0   0.00086     0.055      17      64 ..     747     794 ..     741     803 .. 0.91
   2 !    8.4   0.0    0.0045      0.29     125     209 ..     846     931 ..     837     939 .. 0.83
   3 !   20.0   0.1   1.3e-06   8.1e-05       7     220 ..    1387    1609 ..    1382    1631 .. 0.73

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 0.00086
   TIGR03522  17 aldevsfeaekGeivGflGPnGaGkstlmkiltgylkadsGsvavage 64 
                 +l  + +++ +Ge+v  +GP G Gks+l+  l g ++  +G+va+ g+
  MMETSP1137-20121227|4105_1 747 TLRGIELSVSPGELVLVVGPTGCGKSSLLSALLGDVPRVAGAVAMRGT 794
                 67789999***********************************98875 PP

  == domain 2    score: 8.4 bits;  conditional E-value: 0.0045
   TIGR03522 125 aeqhkkigalskGyrqrvGlakallhdPkvlildePttGldPnqlvei.revikeiakdktvilsthimqevealcdrviiinkGk 209
                 +e   k  +ls G +qr  la+a   + ++++ld+  + +d     +i  e i+     +t +l th +        +v+++ kG 
  MMETSP1137-20121227|4105_1 846 TEIGEKGVNLSGGQQQRLNLARACYAHTDIVLLDDVLSAVDAHVGQHIyNECIHGFLASRTRVLVTHSVALTLPRASKVVVMTKGG 931
                 566667779********************************988777724689999999999999998887777778888887775 PP

  == domain 3    score: 20.0 bits;  conditional E-value: 1.3e-06
   TIGR03522    7 dlsklygkqk..aldevsfeaekGeivGflGPnGaGkstlmkiltgylkadsGsvavagedvlknslevrkn.iGylPehnPl......yldlyvreylefsaalyklkgrklkkrveelielvGlkaeqhkkigalskGyrqrvGlakallhdPkvlildePttGldPnqlveirevike.iakdktvilsthimqevealcdrviiinkGkivadkkleelk 220 
                  ++  +y +    + ++++f++      G +G  GaGks+l   l   ++ +sG + + g d    +l+  ++ +  + +   l      y  + v     +  +l     r+   +v+      Gl +      g+ls G rq v +++all   ++l++de t+ +d +    i++++++  + + t++  +h +  v    +rv+++  G ++  ++ + l 
  MMETSP1137-20121227|4105_1 1387 SVCMKYPTASapVFNSLTFSVPAFTRCGVVGRTGAGKSSLAVALFRVVELSSGKIVIGGVDHACVPLQTLRSrMSIIQQEPTLfrgtlrYNLMPVESGEPLADELLWAALRRAGLEVKVRAMPLGLDHVLSEGGGNLSAGERQLVCMTRALLKRASILLMDEATASVDHETDARIQDMLRSdFCGNTTILTVAHRLHTVM-FYERVLVLGAGAVLEHDAPHALL 1609
                  55556655441158999999999999999999999999999999999999999999999998877776655414444433334111111334444433333334433333333344444445678888889999*******************************************99853788888888999999885.78999999999999888766664 PP

>> TIGR02633  xylG: D-xylose ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.8   0.0    0.0016       0.1      16      52 ..     747     783 ..     744     797 .. 0.89
   2 !   10.4   0.0   0.00052     0.034     403     479 ..     854     930 ..     849     943 .. 0.83
   3 !   20.8   0.0   3.9e-07   2.5e-05      28     205 ..    1411    1586 ..    1394    1612 .. 0.62

  Alignments for each domain:
  == domain 1    score: 8.8 bits;  conditional E-value: 0.0016
   TIGR02633  16 aldnidlklraGeivslcGenGaGkstlmkvlsgvyp 52 
                 +l +i+l + +Ge+v + G  G+Gks+l+  l g  p
  MMETSP1137-20121227|4105_1 747 TLRGIELSVSPGELVLVVGPTGCGKSSLLSALLGDVP 783
                 5889************************998877555 PP

  == domain 2    score: 10.4 bits;  conditional E-value: 0.00052
   TIGR02633 403 rlsGGnqqkavlakllllnprvlildeptrGvdvGakyeiyklinq..laqeGvaiivvsselaevlGlsdrvlvigeG 479
                 +lsGG+qq+  la+    +  +++ld+    vd      iy+   +  la +  + ++v+  +a  l  + +v+v+ +G
  MMETSP1137-20121227|4105_1 854 NLSGGQQQRLNLARACYAHTDIVLLDDVLSAVDAHVGQHIYNECIHgfLASR--TRVLVTHSVALTLPRASKVVVMTKG 930
                 69***************************************85544114444..4455666678889999999999987 PP

  == domain 3    score: 20.8 bits;  conditional E-value: 3.9e-07
   TIGR02633   28 eivslcGenGaGkstlmkvlsgvyphGtydGeilfegeelkassirdterkGiviihqeltlvkelsvleniflGneitlkGglmdydamvlrakellrelkldasnv......trpvsdlGlGqqqlveiakalnkqvrllildepsaslteketeilldiirdlkakgvacvyishkleevk 205 
                     ++ G  GaGks+l   l  v      +G+i+  g +       +t r  ++ii qe tl +   +  n+ +  e   +G  ++++ +    ++   e+k+ a++       +   ++l  G++qlv +++al k++ +l++de +as+ ++    + d++r     + + + ++h+l+ v 
  MMETSP1137-20121227|4105_1 1411 TRCGVVGRTGAGKSSLAVALFRVVEL--SSGKIVIGGVDHACVP-LQTLRSRMSIIQQEPTLFRGT-LRYNL-MPVE---SGEPLADELLWAALRRAGLEVKVRAMPLgldhvlSEGGGNLSAGERQLVCMTRALLKRASILLMDEATASVDHETDARIQDMLRSDFCGNTTILTVAHRLHTVM 1586
                  55677778888888887777776654..3577777777654444.457777788888888877652.23332.3333...23333444443333333344444444431000012334667778889999999999999999999999888777777778888877777788888888887764 PP

>> TIGR02323  CP_lyasePhnK: phosphonate C-P lyase system protein PhnK
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.9   0.0   0.00019     0.012      23      60 ..     753     791 ..     743     801 .. 0.85
   2 !   12.0   0.0   0.00037     0.024     138     215 ..     851     931 ..     843     938 .. 0.76
   3 !   17.4   0.2   8.3e-06   0.00053      29     220 ..    1412    1603 ..    1382    1613 .. 0.79

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 0.00019
   TIGR02323  23 f.lypGevlgivGesGsGkstllkalaarlladaGevty 60 
                 + + pGe++ +vG +G Gks+ll+al + +   aG v  
  MMETSP1137-20121227|4105_1 753 LsVSPGELVLVVGPTGCGKSSLLSALLGDVPRVAGAVAM 791
                 4478***********************999999998864 PP

  == domain 2    score: 12.0 bits;  conditional E-value: 0.00037
   TIGR02323 138 kpaafsGGmqqrlqiarnlvtrprlvfmeptGGlvsvqarllllrglvrel..glaviivth.lavarllaqrllvmkqGr 215
                 k  ++sGG qqrl++ar+  ++  +v+++     v       +  + ++ +  + + ++vth +a++   a++++vm +G 
  MMETSP1137-20121227|4105_1 851 KGVNLSGGQQQRLNLARACYAHTDIVLLDDVLSAVDAHVGQHIYNECIHGFlaSRTRVLVTHsVALTLPRASKVVVMTKGG 931
                 55679***********************9875555554444566666666511345799***8888888999*****9985 PP

  == domain 3    score: 17.4 bits;  conditional E-value: 8.3e-06
   TIGR02323   29 vlgivGesGsGkstllkalaarlladaGevtyesrsr.elellalseaerrlllrtewGlvhqnprGlrmevsaGanigerllavgarhyG...kiraaakwlekveidaarikpaafsGGmqqrlqiarnlvtrprlvfm.eptGGl.vsvqarll.llrglvrelglaviivth.lavarllaqrllvmkqGrvvesG 220 
                    g+vG +G+Gks+l  al   +  ++G++     ++  + l +l    r  +++ e  l +   r   m v +G  +++ ll    r  G   k+ra    l++v  +       ++s G +q + ++r+l+ r  +++m e t  +    +ar+  +lr+     + +++ v+h l  + ++ +r+lv+  G v+e  
  MMETSP1137-20121227|4105_1 1412 RCGVVGRTGAGKSSLAVALFRVVELSSGKIVIGGVDHaCVPLQTL--RSRMSIIQQEPTLFRGTLRYNLMPVESGEPLADELLWAALRRAGlevKVRAMPLGLDHVLSEG----GGNLSAGERQLVCMTRALLKRASILLMdEATASVdHETDARIQdMLRSDFC-GNTTILTVAHrLHTV-MFYERVLVLGAGAVLEHD 1603
                  468******************999*****9998777533444444..345567788888888888877899************999999994223333334566665555....789************************99999998899****999999877.577889999*55555.6677**********9975 PP

>> TIGR01194  cyc_pep_trnsptr: cyclic peptide transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.2       3.4   2.2e+02     125     306 ..     479     532 ..     443     660 .. 0.59
   2 !   22.2   0.0   1.5e-07   9.9e-06     354     515 ..     745     900 ..     729     930 .. 0.78
   3 !   16.0   0.0   1.2e-05   0.00074     370     549 ..    1413    1601 ..    1123    1604 .. 0.70

  Alignments for each domain:
  == domain 1    score: -2.0 bits;  conditional E-value: 3.4
   TIGR01194 125 tllilttllvelavtlfglaylaylsvvvflltvvlivlGvaayllarsrGlkftykvrdeedelnkyttalvsGlkelklnrirrlsfarsaisesavrvadlniieilifilaktvGslllsllvGllltlaayfavidakaisasvlvllyikGplvq..lvsilpilararvaftrlael 306
                 ++                                                                                                                                   aa + v + + +  ++ +l+yi Gp     +   +  l    v ++r+  l
  MMETSP1137-20121227|4105_1 479 FT----------------------------------------------------------------------------------------------------------------------------------PAASWVVLEGAQLLLTLAMLFYILGPAAVggVCVCVVTLPVNAVVMRRIKRL 532
                 33..................................................................................................................................3444444444444444444445544433211111111112222333333333 PP

  == domain 2    score: 22.2 bits;  conditional E-value: 1.5e-07
   TIGR01194 354 gfalGpidlriasGelvyivGenGcGkstliklllGlyipqeGellldGeavsdesrddyrdlfsavfadyylfddlvqpdekkqasldqatty...lsrleledkvkvedlnystttdlstGqrkrlalvnayleerpvllldewaadqdpafkrvfyeellpd 515
                  ++l  i+l ++ Gelv +vG  GcGks+l+  llG      G + + G  vs   +     +  + + +  lf    +  e +  ++  a      +  l   d+ ++ + +      ls Gq++rl l  a   +  ++lld+  +  d    +  y+e +  
  MMETSP1137-20121227|4105_1 745 HYTLRGIELSVSPGELVLVVGPTGCGKSSLLSALLGDVPRVAGAVAMRGT-VSYCPQKA--WVCNTTLRENILFGSAFD--ESRYNAVIAACALgpdIAMLPAGDRTEIGEKGVN----LSGGQQQRLNLARACYAHTDIVLLDDVLSAVDAHVGQHIYNECIHG 900
                 478999******************************99889999999996.44444433..467888999999999877..6555555555543122677788888888887766....9999999999999999999999999999999999888888887655 PP

  == domain 3    score: 16.0 bits;  conditional E-value: 1.2e-05
   TIGR01194  370 vyivGenGcGkstliklllGlyipqeGellldGeavsdesrddyrdlfsavfadyylfddlvq....pdekkqasldq.attylsrleledkvkvedlnyst.....ttdlstGqrkrlalvnayleerpvllldewaadqdpafkrvfyeellpdlkrrGktilvishddryfeladrlikladGkvvk 549 
                    +vG  G Gks+l+  l  +    +G++++ G   +    +  r  +s +  +  lf   +     p e  ++  d+     l+r +le kv+ + l+          +ls G+r+ + +  a l+   +ll+de +a  d        + l  d+     til ++h  +   + +r++ l +G v++
  MMETSP1137-20121227|4105_1 1413 CGVVGRTGAGKSSLAVALFRVVELSSGKIVIGGVDHACVPLQTLRSRMSIIQQEPTLFRGTLRynlmPVESGEPLADElLWAALRRAGLEVKVRAMPLGLDHvlsegGGNLSAGERQLVCMTRALLKRASILLMDEATASVDHETDARIQDMLRSDFCG-NTTILTVAHRLHTVMFYERVLVLGAGAVLE 1601
                  458******************************99999999999999999999999997544311225666666666515689*************88865311112579********************************99888888888888864.469999999999999999999999999875 PP

>> TIGR01978  sufC: FeS assembly ATPase SufC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1   0.0   5.6e-07   3.6e-05      15      50 ..     747     782 ..     741     802 .. 0.85
   2 ?    6.4   0.0     0.017       1.1     145     221 ..     855     930 ..     842     937 .. 0.78
   3 ?    6.6   0.0     0.015      0.96      13      72 ..    1397    1454 ..    1388    1612 .. 0.64

  Alignments for each domain:
  == domain 1    score: 21.1 bits;  conditional E-value: 5.6e-07
   TIGR01978  15 iLkglnlevkkGevhaimGpnGsGkstLskvlaghe 50 
                  L+g++l+v++Ge++ ++Gp G Gks L ++l g+ 
  MMETSP1137-20121227|4105_1 747 TLRGIELSVSPGELVLVVGPTGCGKSSLLSALLGDV 782
                 599*****************************9974 PP

  == domain 2    score: 6.4 bits;  conditional E-value: 0.017
   TIGR01978 145 fsGGekkrneilqlallePklaiLDeiDsGlDvDalkivaegvnklreeekalliithyerllelikPdvvhvlldG 221
                  sGG ++r ++ +    + ++++LD++ s +D    + + ++  +    +++ +++th   l    +  +v v+++G
  MMETSP1137-20121227|4105_1 855 LSGGQQQRLNLARACYAHTDIVLLDDVLSAVDAHVGQHIYNECIHGFLASRTRVLVTHSVALTL-PRASKVVVMTKG 930
                 7********************************9988887765555556677889999887654.455555566555 PP

  == domain 3    score: 6.6 bits;  conditional E-value: 0.015
   TIGR01978   13 keiLkglnlevkkGevhaimGpnGsGkstLskvlaghekyevtsGeiklkgqdlleleve 72  
                   ++ ++l+ +v + +   ++G+ G+Gks L+ +l   + +e++sG+i + g d + +  +
  MMETSP1137-20121227|4105_1 1397 APVFNSLTFSVPAFTRCGVVGRTGAGKSSLAVALF--RVVELSSGKIVIGGVDHACVPLQ 1454
                  5678888889999999999***********99887..56889999999998876655544 PP

>> TIGR03740  galliderm_ABC: lantibiotic protection ABC transporter, ATP-binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.7   0.0   0.00051     0.032      16     179 ..     748     910 ..     742     934 .. 0.78
   2 !   23.4   0.0   1.4e-07   8.8e-06      15     187 ..    1399    1585 ..    1384    1602 .. 0.74

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 0.00051
   TIGR03740  16 vnnvslkvkknsvygllGpnGaGkstllklltGllrktsGeilldgre.wtrkdlkkiGsliesPalyenltarenlkvrtlllglpesrieevlkivdlentekkkakqfslGmkqrlGiaiallnkPkllildePtnGldPl.GiqelreliksfpekGitvil 179
                 +  ++l+v   ++  ++Gp G+Gks+ll  l G + + +G + + g   +  ++     + + +  l++  +a ++ + ++++ +        +l   d ++++ k + ++s G +qrl +a a   + ++++ld+    +d   G +   e i+ f    + v++
  MMETSP1137-20121227|4105_1 748 LRGIELSVSPGELVLVVGPTGCGKSSLLSALLGDVPRVAGAVAMRGTVsYCPQKAWVCNTTLRENILFG--SAFDESRYNAVIAACALGPDIAMLPAGDRTEIGEKGV-NLSGGQQQRLNLARACYAHTDIVLLDDVLSAVDAHvGQHIYNECIHGFLASRTRVLV 910
                 67899999999999******************************9975144555555555666666766..6788888888777777776667899999999988766.6999**********************9999999751444456677777666665555 PP

  == domain 2    score: 23.4 bits;  conditional E-value: 1.4e-07
   TIGR03740   15 vvnnvslkvkknsvygllGpnGaGkstllklltGllrktsGeilldgrewtr...kdlkkiGsliesPalyenltarenlkvrtlllglpesrieevlki...........vdlentekkkakqfslGmkqrlGiaiallnkPkllildePtnGldPlGiqelreliksfpekGitvilsshilsev 187 
                  v n+++++v+  +  g++G  GaGks+l   l  +++ +sG+i++ g + +    + l++  s+i++ ++  + t r nl  +   + l ++ +   l+            ++l++      +++s G +q + ++ all++  +l++de t  +d      ++++++s     +t++  +h l  v
  MMETSP1137-20121227|4105_1 1399 VFNSLTFSVPAFTRCGVVGRTGAGKSSLAVALFRVVELSSGKIVIGGVDHACvplQTLRSRMSIIQQEPTLFRGTLRYNLMPVESGEPLADELLWAALRRaglevkvrampLGLDHVLSEGGGNLSAGERQLVCMTRALLKRASILLMDEATASVDHETDARIQDMLRSDFCGNTTILTVAHRLHTV 1585
                  678899999999999******************************9988776112566666788876554444555556554444445554444444443000000011124556666778899********************************9999999999999877788888888888766 PP

>> TIGR00955  3a01204: pigment precursor permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.1     1e-05   0.00065      44     205 ..     751     893 ..     729     930 .. 0.78
   2 !   13.0   0.1   9.4e-05     0.006      56     245 ..    1415    1599 ..    1413    1609 .. 0.66

  Alignments for each domain:
  == domain 1    score: 16.2 bits;  conditional E-value: 1e-05
   TIGR00955  44 vsGvaksGellAvlGsSGaGKtTLlnalafrsekglkvsgdvllnGekveakemraisayvqqddlfiptltvrehLmfsahlrlkrrltkkekrerveevleelg.LrkcadtrigvpgrvkglSgGerkRlalaselltdPilLfcDEPTsGLDsfsaasv 205
                 +   + +Gel+ v+G+ G GK+ Ll+al       + +          ++a  mr   +y  q+   ++t t re++ f + +  +r +++     +  ++  ++  L     t ig +g    lSgG+++Rl la        ++++D+  s  D+   +++
  MMETSP1137-20121227|4105_1 751 IELSVSPGELVLVVGPTGCGKSSLLSALLGD----VPR---------VAGAVAMRGTVSYCPQKAWVCNT-TLRENILFGSAFDESR-YNA---VIAACALGPDIAmLPAGDRTEIGEKGV--NLSGGQQQRLNLARACYAHTDIVLLDDVLSAVDAHVGQHI 893
                 555689*********************9754....433.........23345688999999999877665.9*********997666.222...22233344444415566789***8885..9******************************999988776 PP

  == domain 2    score: 13.0 bits;  conditional E-value: 9.4e-05
   TIGR00955   56 vlGsSGaGKtTLlnalafrsekglkvsgdvllnGek...veakemraisayvqqddlfiptltvrehLmfsahlrlkrrltkk.ekrerveevleelgLrkcadtrigvpgrvkglSgGerkRlalaselltdPilLfcDEPTsGLDsfsaasvvkvLkklaqkgktviltiHQPsselfelfdkiillaeGrv 245 
                  v+G  GaGK+ L  al      +l+  g++++ G     v  +++r + + +qq+  ++     ++ + +++   l ++l     +r+  e  ++++ L        g  g    lS+Ger+ + +   ll+  ++L++DE T++ D  + a +  +L++     +t++++ H     +   ++++++l  G v
  MMETSP1137-20121227|4105_1 1415 VVGRTGAGKSSLAVALFR--VVELSS-GKIVIGGVDhacVPLQTLRSRMSIIQQEPTLFRGTLRYNLMPVESGEPLADELLWAaLRRAGLEVKVRAMPLGLDHVLSEG-GG---NLSAGERQLVCMTRALLKRASILLMDEATASVDHETDARIQDMLRSDFCGNTTILTVAHRLHTVM--FYERVLVLGAGAV 1599
                  667777777777544432..333333.456666654222456777777777777654444333456666777777777766655777777777777777644433334.33...5********************************99999999999876666666777777644433..3667777777665 PP

>> TIGR00956  3a01205: pleiotropic drug resistance family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.7   0.0   0.00023     0.015      70     124 ..     741     797 ..     703     821 .. 0.74
   2 ?    0.2   0.0      0.34        22     200     243 ..     846     888 ..     832     911 .. 0.85
   3 !    6.7   0.0    0.0037      0.24     210     286 ..    1523    1596 ..    1481    1602 .. 0.76

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 0.00023
   TIGR00956  70 eskkfdilkdvdglikpgelvvvLGrPgsGcstlLksiasktegfkkg..keskitY 124
                 + +    l+ ++  + pgelv+v+G+ g G+s+lL ++ +++ + + +    ++++Y
  MMETSP1137-20121227|4105_1 741 TPRPHYTLRGIELSVSPGELVLVVGPTGCGKSSLLSALLGDVPRVAGAvaMRGTVSY 797
                 33445678999999************************9999877654114566666 PP

  == domain 2    score: 0.2 bits;  conditional E-value: 0.34
   TIGR00956 200 tkvGndlvRGvsGGerkRvsiaevlvakakiqcwDnatrGLDsa 243
                 t++G+  v  +sGG+++R+ +a ++ a++ i ++D++   +D+ 
  MMETSP1137-20121227|4105_1 846 TEIGEKGV-NLSGGQQQRLNLARACYAHTDIVLLDDVLSAVDAH 888
                 66666655.379***********************998888875 PP

  == domain 3    score: 6.7 bits;  conditional E-value: 0.0037
   TIGR00956  210 vsGGerkRvsiaevlvakakiqcwDnatrGLDsatalefvkalktsaeilkatalvaiyqasqdayelFdkvvvlye 286 
                  +s Ger+ v ++ +l+ +a+i+++D+at  +D  t   +  +l+   ++  +t+++++     ++   +++v+vl +
  MMETSP1137-20121227|4105_1 1523 LSAGERQLVCMTRALLKRASILLMDEATASVDHETDARIQDMLRS--DFCGNTTILTVAHRL-HTVMFYERVLVLGA 1596
                  799******************************999999998885..555566555554333.23344555666555 PP

>> TIGR00630  uvra: excinuclease ABC subunit A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.7   0.0    0.0056      0.36     622     654 ..     747     779 ..     741     794 .. 0.78
   2 ?    0.4   0.0      0.47        30     821     842 ..     847     868 ..     844     879 .. 0.85
   3 ?    3.4   0.0     0.055       3.5     815     904 ..    1510    1595 ..    1499    1599 .. 0.84

  Alignments for each domain:
  == domain 1    score: 6.7 bits;  conditional E-value: 0.0056
   TIGR00630 622 nlkdidvsiplglltvitGvsgsGkstLindiL 654
                  l+ i++s+  g+l+++ G+ g Gks+L+  +L
  MMETSP1137-20121227|4105_1 747 TLRGIELSVSPGELVLVVGPTGCGKSSLLSALL 779
                 577788888888888888888888888877666 PP

  == domain 2    score: 0.4 bits;  conditional E-value: 0.47
   TIGR00630 821 klGqpattLsGGeaqrvkLake 842
                 ++G++   LsGG  qr+ La+ 
  MMETSP1137-20121227|4105_1 847 EIGEKGVNLSGGQQQRLNLARA 868
                 588999999*******999976 PP

  == domain 3    score: 3.4 bits;  conditional E-value: 0.055
   TIGR00630  815 vGLgYiklGqpattLsGGeaqrvkLakeLskrstgktlyilDePttGLhfdDikkLlevlqrlvdkGntvvviehnldviksaDyiidlG 904 
                  +GL+++ l +    Ls Ge q v +++ L kr+    + ++De t+ +  +  +++ ++l++      t++ + h l+ +   + ++ lG
  MMETSP1137-20121227|4105_1 1510 LGLDHV-LSEGGGNLSAGERQLVCMTRALLKRA---SILLMDEATASVDHETDARIQDMLRSDFCGNTTILTVAHRLHTVMFYERVLVLG 1595
                  555555.5666678****************997...599********9888888999999998888888999******998888887777 PP

>> TIGR01420  pilT_fam: twitching motility protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00047      0.03     120     145 ..     756     781 ..     749     788 .. 0.84
   2 ?   -2.9   0.0       9.9   6.3e+02     127     142 ..    1415    1430 ..    1415    1443 .. 0.77

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 0.00047
   TIGR01420 120 kkrGlilvtGptGsGKsttlAslidy 145
                 ++  l+lv+GptG GKs  l +l+  
  MMETSP1137-20121227|4105_1 756 SPGELVLVVGPTGCGKSSLLSALLGD 781
                 56679*****************9875 PP

  == domain 2    score: -2.9 bits;  conditional E-value: 9.9
   TIGR01420  127 vtGptGsGKsttlAsl 142 
                  v+G tG+GKs    +l
  MMETSP1137-20121227|4105_1 1415 VVGRTGAGKSSLAVAL 1430
                  79*******9755554 PP

>> TIGR00231  small_GTP: small GTP-binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   0.0     0.022       1.4       6      26 ..     761     781 ..     759     797 .. 0.91
   2 ?    3.9   0.0      0.14       9.2       5      20 ..    1412    1427 ..    1410    1440 .. 0.87

  Alignments for each domain:
  == domain 1    score: 6.5 bits;  conditional E-value: 0.022
   TIGR00231   6 ivivGhvdvGKstLlnsllkn 26 
                 +++vG  ++GKs+Ll+ ll++
  MMETSP1137-20121227|4105_1 761 VLVVGPTGCGKSSLLSALLGD 781
                 799***************986 PP

  == domain 2    score: 3.9 bits;  conditional E-value: 0.14
   TIGR00231    5 kivivGhvdvGKstLl 20  
                  ++++vG+ ++GKs+L 
  MMETSP1137-20121227|4105_1 1412 RCGVVGRTGAGKSSLA 1427
                  69************96 PP

>> TIGR03263  guanyl_kin: guanylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.0     0.002      0.13       2      33 ..     759     790 ..     758     794 .. 0.86
   2 ?   -1.6   0.1         6   3.9e+02       6      23 ..    1415    1432 ..    1414    1438 .. 0.84

  Alignments for each domain:
  == domain 1    score: 9.7 bits;  conditional E-value: 0.002
   TIGR03263   2 klivisgpsGvGKstlvkklleekeelklsvS 33 
                 +l++++gp+G+GKs+l+++ll + ++++ +v+
  MMETSP1137-20121227|4105_1 759 ELVLVVGPTGCGKSSLLSALLGDVPRVAGAVA 790
                 7999****************998888776665 PP

  == domain 2    score: -1.6 bits;  conditional E-value: 6
   TIGR03263    6 isgpsGvGKstlvkklle 23  
                  ++g +G+GKs+l+ +l++
  MMETSP1137-20121227|4105_1 1415 VVGRTGAGKSSLAVALFR 1432
                  57889*******999886 PP

>> TIGR00618  sbcc: exonuclease SbcC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   0.0    0.0061      0.39      28      58 ..     759     785 ..     751     802 .. 0.79
   2 ?    0.5   0.1      0.35        22      22      44 ..    1410    1427 ..    1404    1431 .. 0.79

  Alignments for each domain:
  == domain 1    score: 6.3 bits;  conditional E-value: 0.0061
   TIGR00618  28 klfvicGktGaGKtsLldAItyALYgkvpre 58 
                 +l ++ G+tG GK+sLl A    L g vpr 
  MMETSP1137-20121227|4105_1 759 ELVLVVGPTGCGKSSLLSA----LLGDVPRV 785
                 7899*************96....55666555 PP

  == domain 2    score: 0.5 bits;  conditional E-value: 0.35
   TIGR00618   22 ftalglklfvicGktGaGKtsLl 44  
                  ft+ g     + G+tGaGK+sL 
  MMETSP1137-20121227|4105_1 1410 FTRCG-----VVGRTGAGKSSLA 1427
                  55544.....89*********95 PP

>> TIGR02928  TIGR02928: orc1/cdc6 family replication initiation protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   0.0     0.039       2.5      41      68 ..     759     786 ..     747     801 .. 0.80
   2 ?    1.9   0.0      0.28        18      45      89 ..    1415    1457 ..    1410    1468 .. 0.73

  Alignments for each domain:
  == domain 1    score: 4.7 bits;  conditional E-value: 0.039
   TIGR02928  41 snvliyGktGtGKtavtkkvlkeleeaa 68 
                 + vl++G+tG+GK++   ++l  + + a
  MMETSP1137-20121227|4105_1 759 ELVLVVGPTGCGKSSLLSALLGDVPRVA 786
                 5599***********9998887766665 PP

  == domain 2    score: 1.9 bits;  conditional E-value: 0.28
   TIGR02928   45 iyGktGtGKtavtkkvlkeleeaaeekdvrvstvyvnCqelstey 89  
                  ++G+tG GK++ + ++++ +e ++ +  + +  v   C  l+t  
  MMETSP1137-20121227|4105_1 1415 VVGRTGAGKSSLAVALFRVVELSSGK--IVIGGVDHACVPLQTLR 1457
                  79************999998877775..45555555566555555 PP

>> TIGR00602  rad24: checkpoint protein rad24
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   0.1     0.014       0.9     105     129 ..     753     777 ..     746     781 .. 0.82

  Alignments for each domain:
  == domain 1    score: 5.8 bits;  conditional E-value: 0.014
   TIGR00602 105 LeskkkriLLitGPsGCgKsTviki 129
                 L + +  + L+ GP GCgKs  +  
  MMETSP1137-20121227|4105_1 753 LSVSPGELVLVVGPTGCGKSSLLSA 777
                 66778889************87765 PP

>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.0     0.013      0.83      23      43 ..     758     778 ..     751     779 .. 0.84
   2 ?   -3.5   0.1         5   3.2e+02    1117    1158 ..    1544    1586 ..    1537    1588 .. 0.90

  Alignments for each domain:
  == domain 1    score: 5.0 bits;  conditional E-value: 0.013
   TIGR02168  23 kgitgiVGPNGcGKSNivDAi 43 
                 ++++ +VGP GcGKS  + A+
  MMETSP1137-20121227|4105_1 758 GELVLVVGPTGCGKSSLLSAL 778
                 57889**********887775 PP

  == domain 2    score: -3.5 bits;  conditional E-value: 5
   TIGR02168 1117 ciLDEVdApLDdaNveRFakllk.efskktQFIviTHnkgTMe 1158
                   ++DE+ A  D     R  ++l+ +f  +t ++ + H+ +T++
  MMETSP1137-20121227|4105_1 1544 LLMDEATASVDHETDARIQDMLRsDFCGNTTILTVAHRLHTVM 1586
                  689*******************9459************99975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1640 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       314  (0.076548); expected 82.0 (0.02)
Passed bias filter:                      193  (0.0470502); expected 82.0 (0.02)
Passed Vit filter:                       103  (0.0251097); expected 4.1 (0.001)
Passed Fwd filter:                        64  (0.0156021); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              64  [number of targets reported over threshold]
# CPU time: 3.83u 0.24s 00:00:04.07 Elapsed: 00:00:03.61
# Mc/sec: 599.62
//
Query:       MMETSP1137-20121227|4106_1  [L=261]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.5e-46  156.2   0.1    1.8e-46  155.9   0.1    1.0  1  TIGR03634 arc_protsome_B: proteasome endopeptidase complex, archaeal, beta subunit
    3.2e-17   60.8   1.5    5.9e-17   60.0   1.0    1.4  1  TIGR03690 20S_bact_beta: proteasome, beta subunit
    1.1e-16   58.9   0.0    1.4e-16   58.5   0.0    1.1  1  TIGR03633 arc_protsome_A: proteasome endopeptidase complex, archaeal, alpha subunit
     0.0033   15.0   0.2      0.019   12.6   0.0    2.0  2  TIGR03692 ATP_dep_HslV: ATP-dependent protease HslVU, peptidase subunit
  ------ inclusion threshold ------
      0.016   13.3   0.6        3.8    5.7   0.0    2.5  2  TIGR04035 glucan_65_rpt: glucan-binding repeat


Domain annotation for each model (and alignments):
>> TIGR03634  arc_protsome_B: proteasome endopeptidase complex, archaeal, beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  155.9   0.1   2.1e-49   1.8e-46       1     184 [.      56     239 ..      56     240 .. 0.99

  Alignments for each domain:
  == domain 1    score: 155.9 bits;  conditional E-value: 2.1e-49
   TIGR03634   1 gtTtvGikvkdgvvlAadkraslgnlvasknvkKvfkiddkialtiaGsvgdaqslvrllkaeaklyelrrkkkisvkalatllsnllksskflpflvqllvgGvdeegpklyslDplGsiiedkytatGsGspvalgvLedeYeedlsleeakklavkaiksaieRDvasGdgidvvvitkdg 184
                 gtTt+ +k + gv++A d+ras g ++as++vkKv++i++ +  t+aG  +d     r+l + +++ el +k++isv a++++lsn+ +++k +   + +++ G d++gp++y +D  G  ++ + +++GsGs++a+gvL++ Y+ d++ +ea+ l  ++i +a+ RD++sG  ++v++i+kdg
  MMETSP1137-20121227|4106_1  56 GTTTLAFKYQGGVIVAVDSRASSGAYIASQTVKKVIEINPFLLGTMAGGAADCSYWERYLGMRCRMXELDQKQRISVAAASKILSNITYQYKGYGLSMGTMICGWDQTGPQIYYVDSDGERLHGSLFSVGSGSTFAYGVLDTGYRFDMTFDEAVALGQRSIFAATYRDAYSGGTVRVYHIDKDG 239
                 8*************************************************************************************************************************************************************************************98 PP

>> TIGR03690  20S_bact_beta: proteasome, beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.0   1.0   7.2e-20   5.9e-17       2     212 ..      53     250 ..      52     254 .. 0.86

  Alignments for each domain:
  == domain 1    score: 60.0 bits;  conditional E-value: 7.2e-20
   TIGR03690   2 aphgttivalaykgGvllaGdrratqGnliasrdvekvfkadeysavgiaGtaglavelvklfqvelehyekieGvplslegkanrlaamvrsnlaaalqGlavvpllvGydleaekGrifsydvvggkeeeeeyesvGsGsvfakgalkklykedlseedavrvavealydaadddsatGGpdlvrkiypvvvvitedGarrvseeelee 212
                 + hgtt +a +y+gGv++a d ra++G  ias+ v+kv + + +   ++aG a+ +    +   +     e  + +++s+++ ++ l+++  +  +    Gl +  ++ G+d++    +i+  d  g +  + +  svGsGs fa g l   y+ d++ ++av +  ++++ a+  d+ +GG     +    v+ i++dG +r+se++  +
  MMETSP1137-20121227|4106_1  53 MVHGTTTLAFKYQGGVIVAVDSRASSGAYIASQTVKKVIEINPFLLGTMAGGAADCSYWERYLGMRCRMXELDQKQRISVAAASKILSNITYQYKG---YGLSMGTMICGWDQTGP--QIYYVDSDG-ERLHGSLFSVGSGSTFAYGVLDTGYRFDMTFDEAVALGQRSIFAATYRDAYSGGTV---R----VYHIDKDGWKRISETDSMD 250
                 57****************************************************999999*99999999999999999999988877777666554...5889999******8644..466556555.555666779********************************************963...3....4567889999888877655 PP

>> TIGR03633  arc_protsome_A: proteasome endopeptidase complex, archaeal, alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.5   0.0   1.7e-19   1.4e-16      28     214 ..      55     239 ..      47     252 .. 0.90

  Alignments for each domain:
  == domain 1    score: 58.5 bits;  conditional E-value: 1.7e-19
   TIGR03633  28 rgttavGiktkegvvlivdkrits.klleaesiekifkiDdhvgaataGlvaDarvlidrarveaqvnrltYdepievevlakkvadlkqqytqvGGvrPfGvalliaGvddkearlfetdPsGalleykavaiGagrekvlellekeykedlsldeaielalkalakal.eeelkaeevevavvevee 214
                 +gtt++  k++ gv+++vd r+ s   + +++++k+ +i+  +  ++aG +aD      +  +  ++  l  ++ i+v + +k +++++ qy  +G      +  +i+G d+++++++  d  G+ l+    ++G+g++ +  +l+  y+ d+++dea+ l+ +++ +a+ +++ +  +v v  ++++ 
  MMETSP1137-20121227|4106_1  55 HGTTTLAFKYQGGVIVAVDSRASSgAYIASQTVKKVIEINPFLLGTMAGGAADCSYWERYLGMRCRMXELDQKQRISVAAASKILSNITYQYKGYGL----SMGTMICGWDQTGPQIYYVDSDGERLHGSLFSVGSGSTFAYGVLDTGYRFDMTFDEAVALGQRSIFAATyRDAYSGGTVRVYHIDKDG 239
                 69*****************999874799****************************9999999*****************************88873....455699********************************************************99877662688888999999888865 PP

>> TIGR03692  ATP_dep_HslV: ATP-dependent protease HslVU, peptidase subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.6   0.0   2.3e-05     0.019       1      54 [.      57     109 ..      57     143 .. 0.87
   2 ?    0.3   0.0      0.13   1.1e+02     118     131 ..     180     193 ..     153     227 .. 0.85

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 2.3e-05
   TIGR03692   1 ttilavrkngkvviagdGqvtlgetvlkenarkvrrlyegkvlaGfaGstadal 54 
                 tt la + +g v++a d +++ g  +  ++++kv ++    +l  +aG++ad  
  MMETSP1137-20121227|4106_1  57 TTTLAFKYQGGVIVAVDSRASSGAYIASQTVKKVIEIN-PFLLGTMAGGAADCS 109
                 899*******************************9985.5688889***99975 PP

  == domain 2    score: 0.3 bits;  conditional E-value: 0.13
   TIGR03692 118 dviaiGsGgnyala 131
                 ++ ++GsG+++a+ 
  MMETSP1137-20121227|4106_1 180 SLFSVGSGSTFAYG 193
                 57899*****9975 PP

>> TIGR04035  glucan_65_rpt: glucan-binding repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   0.1    0.0048       3.9       8      42 ..     154     188 ..     149     207 .. 0.72
   2 ?    5.7   0.0    0.0046       3.8      16      30 ..     245     259 ..     233     261 .] 0.73

  Alignments for each domain:
  == domain 1    score: 5.6 bits;  conditional E-value: 0.0048
   TIGR04035   8 GkavtGaqtIdgvkvYFdenGkQvKGefvtdgdkt 42 
                 G ++ G+ +   + +Y d++G  + G++ + g+++
  MMETSP1137-20121227|4106_1 154 GTMICGWDQTGPQIYYVDSDGERLHGSLFSVGSGS 188
                 66667777777777777777777777777776665 PP

  == domain 2    score: 5.7 bits;  conditional E-value: 0.0046
   TIGR04035  16 tIdgvkvYFdenGkQ 30 
                 + d  ++YF+ nG Q
  MMETSP1137-20121227|4106_1 245 ETDSMDLYFKYNGEQ 259
                 458999********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (261 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       117  (0.0285227); expected 82.0 (0.02)
Passed bias filter:                      111  (0.02706); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.25u 0.17s 00:00:00.42 Elapsed: 00:00:00.63
# Mc/sec: 546.81
//
Query:       MMETSP1137-20121227|4107_1  [L=254]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (254 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       136  (0.0331546); expected 82.0 (0.02)
Passed bias filter:                      119  (0.0290102); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.17s 00:00:00.41 Elapsed: 00:00:00.39
# Mc/sec: 859.62
//
Query:       MMETSP1137-20121227|4108_1  [L=256]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (256 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        59  (0.0143832); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.16s 00:00:00.39 Elapsed: 00:00:00.49
# Mc/sec: 689.58
//
Query:       MMETSP1137-20121227|4110_1  [L=321]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (321 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        90  (0.0219405); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.16s 00:00:00.42 Elapsed: 00:00:00.32
# Mc/sec: 1324.02
//
Query:       MMETSP1137-20121227|4112_1  [L=347]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (347 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        74  (0.01804); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.13s 00:00:00.40 Elapsed: 00:00:00.33
# Mc/sec: 1387.89
//
Query:       MMETSP1137-20121227|4113_1  [L=926]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.6e-88  293.6   0.0    1.3e-87  292.8   0.0    1.2  1  TIGR02412 pepN_strep_liv: aminopeptidase N
    6.2e-50  168.0   0.0    7.6e-50  167.7   0.0    1.1  1  TIGR02414 pepN_proteo: aminopeptidase N
    2.3e-35  120.2   0.0    3.4e-35  119.6   0.0    1.1  1  TIGR02411 leuko_A4_hydro: leukotriene A-4 hydrolase/aminopeptidase


Domain annotation for each model (and alignments):
>> TIGR02412  pepN_strep_liv: aminopeptidase N
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  292.8   0.0   9.3e-91   1.3e-87      19     451 ..      68     510 ..      63     557 .. 0.87

  Alignments for each domain:
  == domain 1    score: 292.8 bits;  conditional E-value: 9.3e-91
   TIGR02412  19 YeialdltgaeegsatrtvstvrvrlsetgaetfvdllaaeiesvtlnGe...ldvapvvdgsriaLeg...LetgenvlrveaklaytntGeGlHr..fvDPvDgevYl..ytqfevadarrvfavFdqPDlKAsfelsvkaPedWtVisnsteeevtt.eeadrvwefeetPklstYltavaaGPyvsvq.keaesiplgiyaRkSlaeyldadaifditrqgldfyeekFgipyPfkkYDqvfvPefnaGAmENaGlVtfaee..fvfraevtdaeketrakvilHElAHmWFGdlVtmrWWddlWLnEsFAeymgalasaeateytdaWttfavqrKawaYeaDqlpttHPivadvadledalsnfDgitYaKGASvLkqLvayvGeeaFlagvnayfkryafgnatLdDlidsLakasgrdlsaWskaWLetaGvdvlkael 451
                 Y++++ l+ +e+ ++  +   v vr +et + + + +++ + ++++ +G    +++a   + s ++ +    L  g+  l ++ + + +n+  G+ r  +vD  Dg++ l   tqfe+ darr   ++d P  KA+fe s+++P   t +sn  e+ v + ++ +++  f +tP++stYl+a  +G +  v+ + ++++ +++++     ++l +   ++   ++ld y+e+F+i yP  k D v +Pef aGAmEN GlVt++e    +   ++ + + ++ a+v++HElAH+WFG+lVtm+WWddlWLnE FA++m++   ++     + W +f ++++ +a + D l ++HPi++++a+ e++ + fD+i+Y KG Sv++ + a +Ge +F++g+++y+ ++++gnat dDl  + ++ sg+ + +   +W +  G   l+++ 
  MMETSP1137-20121227|4113_1  68 YALDIALRLDEHAFDGVVAVDVDVRSRET-SSLTLHAKELNFKKASFEGIgdaTNIALSEETSTVTFTFdkpLPLGNGKLSITYTGELNNQMAGFYRssYVD-RDGNTKLmaSTQFEAIDARRCLPCWDEPRRKATFECSLRVPGHMTALSNMPEKGVEEhADGSKTVSFDRTPRMSTYLLAFVVGEFDAVEaTSKNGVQIRVFCPPG-KPQLGRF-ALECAVAALDSYDETFQIHYPLPKADMVAIPEFAAGAMENWGLVTYREVdlLIDDXSASSRQLQRVAEVVIHELAHQWFGNLVTMEWWDDLWLNEGFATWMETGVCHKLHPDWNMWEQFITDMQGRALSLDALRSSHPIQVPIAKAEEVEQVFDAISYCKGGSVVRMVHAILGEAKFVEGLRNYMSNFSYGNATTDDLWGAWEDVSGKPIRKLMGQWTRQMGFPLLELKA 510
                 88888888888888876666666665554.456788888999999999864356666666777777653335777888999999999999999998833466.46666541169***************************************888755415667899***********************978889********987.5677765.5899*******************************************9755666778888899999*******************************************99*************************************************************************************************************9998887664 PP

>> TIGR02414  pepN_proteo: aminopeptidase N
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  167.7   0.0   5.5e-53   7.6e-50       9     527 ..      70     594 ..      62     722 .. 0.85

  Alignments for each domain:
  == domain 1    score: 167.7 bits;  conditional E-value: 5.5e-53
   TIGR02414   9 iekvkLefdleeeetlvraklkverkkeeeakaelvldGeelkllsikldgkklaedeyqlddesLtiasvpeekftl...eieteikPeentsLeGLYksg.....g....lfctqCEaeGFRrityflDRPdvlskytvtieAdkkkypvlLsnGnkieseeledgrhlaeweDPfkkPsYLFAlvAGdlkvledkfitksgrevalevyveekkedkaefalesLkkamkwDEevfglEyDLdifmivAvddFnmGAmEnkgLniFnsklvLAdpetatDadyeriesviaHEYFHnwtGnRvtcRDWFqlslkEGltvfRdqefsadmtsravkRiedvkllravqFaEDagplaHPvr.P.esyveinnfytatvYekGaEviRmlktllGeeafrkgmdlYfkrhDGqavtvedfvaaledasgkdleqfk.rWysqaGtPelevkeeydaekkeytltlkqstpptpgq..kekkplhiPlavgll.daegkklelslegeareteevlelkeaeetfvfegikekpvps 527
                 + +++L++d +  + +v  +++v+ +++    ++l+l+ +el++++ +++g   ++ +  l +e+ t++ ++++ + l   +++++ + e n+++ G Y+s+     g    + +tq Ea   Rr     D P   ++++  ++   +   + Lsn  +   ee  dg ++++++   +  +YL A+v G+++++e++    s+  v+++v+  ++k +  +fale+   a+   +e+f+  y L +  +vA+ +F  GAmEn gL  + +  +L d  +a  ++ +r+  v+ HE  H w Gn vt+  W  l l EG+  + +       +       + ++ ++ +    Da   +HP++ P ++ +e++  + a  Y kG  v+Rm++++lGe +f +g+  Y++++    +t++d+  a ed+sgk +++ + +W +q G P le+k +  + +++++l l+qs   ++g   ++ ++ +iPl v+   +a+g++++ +    ++e++  l++k + + f+++  ++ p+  
  MMETSP1137-20121227|4113_1  70 L-DIALRLDEHAFDGVVAVDVDVRSRET----SSLTLHAKELNFKKASFEGIG-DATNIALSEETSTVTFTFDKPLPLgngKLSITYTGELNNQMAGFYRSSyvdrdGntklMASTQFEAIDARRCLPCWDEPRRKATFECSLRVPGH--MTALSNMPEKGVEEHADGSKTVSFDRTPRMSTYLLAFVVGEFDAVEAT----SKNGVQIRVFCPPGKPQLGRFALECAVAALDSYDETFQIHYPLPKADMVAIPEFAAGAMENWGLVTYREVDLLIDDXSASSRQLQRVAEVVIHELAHQWFGNLVTMEWWDDLWLNEGFATWMETGVCHKLHPDWNMWEQFITDMQGRALSLDALRSSHPIQvPiAKAEEVEQVFDAISYCKGGSVVRMVHAILGEAKFVEGLRNYMSNFSYGNATTDDLWGAWEDVSGKPIRKLMgQWTRQMGFPLLELKAAEPQPDGSIKLSLHQSWFLSDGSapSSSQSWTIPLFVTASgGANGEEKMDEAPLMPAEADFELNVKGDGAWFKLNAGQHVPMRV 594
                 3.46666666666677777776666443....369****************54.556788888998988888886655333677788899**********963333312333578****************************99866..5679****99**************9999999***********999874....7888**************************988889***********************************************************************************************9999999999999****************85447899******************************************9999****************9886548*****************************987666542268899*****9987625677777777666677777888888888888887777777655 PP

>> TIGR02411  leuko_A4_hydro: leukotriene A-4 hydrolase/aminopeptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  119.6   0.0   2.5e-38   3.4e-35      15     412 ..      67     477 ..      58     484 .. 0.83

  Alignments for each domain:
  == domain 1    score: 119.6 bits;  conditional E-value: 2.5e-38
   TIGR02411  15 ktelnlkvdfdkkklaGsvtyklkskeenkeklvLdtsyleikevtinglkadfeieerkealGsklkislpsetsknkelelkieyett..dkctaLqflepeqtkGkkaPylfsqcqaiharsllPcfdtPsvkstydakvesp.lavllsglrket....skdegkylfkqkvPiPayLvalasGdLas....apiGprssvysekvelekcqyefekdtekflkvaeelifpyvWkkydllvlppsfPyGGmenPn.ltfatPtLiagdrsn........vdviahelahsWsGnLvtnkswehfWLneGftvylerkivGaleGekerhfsaligwneLqesvktlkkdpeytkLvvdLkdndPddafssvPyekGsnlLfyleqllGGkaefdpflkaylkkfayksldtkq 412
                   +l++ +  d+++  G v+ ++ ++++++++l L +++l+ k++  +g+    +i   +e+   +++ ++p  +  +   +l+i+y     ++ +++      + +G+++    +q +ai ar  lPc d P  k t++ ++++p + + ls ++++     +++++++ f +   + +yL+a ++G++++    ++ G +  v+  + + +  ++ +e  ++ +    e + ++y   k d++ + p f  G men   +t+    L+ +d s         ++v+ helah W GnLvt + w+ +WLneGf+ ++e  ++ +l+ + +   + +++++    s+++l   +     + +   ++ ++ f ++ y kG ++++++  +lG +a+f   l++y+ +f+y   +t++
  MMETSP1137-20121227|4113_1  67 AYALDIALRLDEHAFDGVVAVDVDVRSRETSSLTLHAKELNFKKASFEGIGDATNIALSEETSTVTFTFDKPLPLGNG---KLSITYTGElnNQMAGFYRSSYVDRDGNTKLMASTQFEAIDARRCLPCWDEPRRKATFECSLRVPgHMTALSNMPEKGveehADGSKTVSFDRTPRMSTYLLAFVVGEFDAveatSKNGVQIRVFCPPGKPQLGRFALECAVAALDSYDETFQIHYPLPKADMVAI-PEFAAGAMENWGlVTYREVDLLIDDXSAssrqlqrvAEVVIHELAHQWFGNLVTMEWWDDLWLNEGFATWMETGVCHKLHPDWNMWEQFITDMQGRALSLDALRSSHPIQVPIAKA--EEVEQVFDAISYCKGGSVVRMVHAILG-EAKFVEGLRNYMSNFSYGNATTDD 477
                 56788889999**************************************88888888888888888888888444444...66666765500555555444555678999888888******************************988999999998434534445566788888899**********9861111456888899********9******99*********************8765.57********7527999999999997642222233368*********************************************999999*99*99999*****9777776666554..46789*******************999.9999999**********9988877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (926 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        82  (0.0199902); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.65u 0.18s 00:00:00.83 Elapsed: 00:00:00.75
# Mc/sec: 1629.63
//
Query:       MMETSP1137-20121227|4114_1  [L=425]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (425 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       132  (0.0321794); expected 82.0 (0.02)
Passed bias filter:                      101  (0.0246221); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.14s 00:00:00.47 Elapsed: 00:00:00.47
# Mc/sec: 1193.52
//
Query:       MMETSP1137-20121227|4115_1  [L=148]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (148 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       131  (0.0319356); expected 82.0 (0.02)
Passed bias filter:                      116  (0.0282789); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.17s 00:00:00.36 Elapsed: 00:00:00.51
# Mc/sec: 383.03
//
Query:       MMETSP1137-20121227|4116_1  [L=345]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00038   17.3   0.8    0.00092   16.1   0.3    1.7  2  TIGR00518 alaDH: alanine dehydrogenase
  ------ inclusion threshold ------
      0.031   11.3   3.3      0.093    9.8   2.3    1.9  1  TIGR02853 spore_dpaA: dipicolinic acid synthetase, A subunit


Domain annotation for each model (and alignments):
>> TIGR00518  alaDH: alanine dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.1     0.018        37     167     195 ..     203     232 ..     190     234 .. 0.81
   2 !   16.1   0.3   4.5e-07   0.00092     212     315 ..     228     325 ..     213     332 .. 0.85

  Alignments for each domain:
  == domain 1    score: 0.9 bits;  conditional E-value: 0.018
   TIGR00518 167 agkvtiiG.gGvvGtnaaklavGlGatvti 195
                   + ++iG + +vG+  a+l   + atvt+
  MMETSP1137-20121227|4116_1 203 GKEAVVIGrSNIVGMPVAHLLQSMDATVTV 232
                 445667773679*****************9 PP

  == domain 2    score: 16.1 bits;  conditional E-value: 4.5e-07
   TIGR00518 212 sriktrysnaveiedavkeadlligavlipGakapklvseelvkqmkpGavivdvaidqGGivetvr.vttydqptyakhevvhyavanmpgav.pktstialtna 315
                 + + +  s + +i+  v++ad++++a+   G   p +v  e    +kpGav++dv i+     et +      +  y+ +  v  a++ +pg v p t ++ l+n+
  MMETSP1137-20121227|4116_1 228 ATVTVCHSRTADIASHVRRADIVVAAI---G--KPEFVKGE---WLKPGAVVIDVGINSKPAPETKKgYRLVGDVDYESATKVAGAITPVPGGVgPMTIAMLLKNT 325
                 5678889999*************9997...4..49999775...689******************99778889999***************998577777777764 PP

>> TIGR02853  spore_dpaA: dipicolinic acid synthetase, A subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   2.3   4.5e-05     0.093     142     190 ..     194     243 ..     182     328 .. 0.87

  Alignments for each domain:
  == domain 1    score: 9.8 bits;  conditional E-value: 4.5e-05
   TIGR02853 142 iestdftihgsrvlvlGlGr.tGktiarllsalgakvsvaareskdlari 190
                 +++  + + g +++v+G    +G+ +a+ll+++ a+v+v+  +++d+a  
  MMETSP1137-20121227|4116_1 194 LQRSGIQVRGKEAVVIGRSNiVGMPVAHLLQSMDATVTVCHSRTADIASH 243
                 677788899999****987637***********************99954 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (345 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       126  (0.0307167); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.24u 0.20s 00:00:00.44 Elapsed: 00:00:00.64
# Mc/sec: 711.50
//
Query:       MMETSP1137-20121227|4117_1  [L=498]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.48    8.5  10.6       0.55    8.3   2.2    2.8  2  TIGR03757 conj_TIGR03757: integrating conjugative element protein, PFL_4709 family


Domain annotation for each model (and alignments):
>> TIGR03757  conj_TIGR03757: integrating conjugative element protein, PFL_4709 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   2.2   0.00013      0.55      31      85 ..      59     113 ..      54     114 .. 0.90
   2 ?    3.7   0.6    0.0035        14      70     105 ..     243     276 ..     173     280 .. 0.61

  Alignments for each domain:
  == domain 1    score: 8.3 bits;  conditional E-value: 0.00013
   TIGR03757  31 rleaqlsaeLpadpeqAealvrqrlqspeakrlqeelaqayqgladawqlGvekv 85 
                 rl++    +Lp+  +qA++ ++++ ++  +++++++++q +q++ +a    ++kv
  MMETSP1137-20121227|4117_1  59 RLKKMGEDKLPEIRKQAHEHLNALQAQLAQRQRHHRVKQVQQAVKKAKAFVLRKV 113
                 566666789*************************************998888875 PP

  == domain 2    score: 3.7 bits;  conditional E-value: 0.0035
   TIGR03757  70 ayqgladawqlGvekvPAvvvdrraVvYGetdvarA 105
                 +  g+ +a  +G ++    + drr VvYGe   ++A
  MMETSP1137-20121227|4117_1 243 SDSGVKEAAINGDRRS--AMKDRRNVVYGESATSAA 276
                 4456666666665543..3569*******9887766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (498 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       346  (0.0843491); expected 82.0 (0.02)
Passed bias filter:                      115  (0.0280351); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.20s 00:00:00.56 Elapsed: 00:00:00.80
# Mc/sec: 821.63
//
Query:       MMETSP1137-20121227|4118_1  [L=93]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (93 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        69  (0.0168211); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.13s 00:00:00.27 Elapsed: 00:00:01.05
# Mc/sec: 116.90
//
Query:       MMETSP1137-20121227|4119_1  [L=808]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.9e-48  161.5  16.9    3.6e-31  106.4   3.1    2.2  2  TIGR00788 fbt: folate/biopterin transporter


Domain annotation for each model (and alignments):
>> TIGR00788  fbt: folate/biopterin transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.8   3.2   6.1e-21   2.5e-17      21     181 ..     304     469 ..     281     478 .. 0.86
   2 !  106.4   3.1   8.8e-35   3.6e-31     285     455 ..     614     786 ..     564     796 .. 0.93

  Alignments for each domain:
  == domain 1    score: 60.8 bits;  conditional E-value: 6.1e-21
   TIGR00788  21 sfePkvvlaiilqrlFekGia.glvrlalspmltdr....lgldgaryqrlsglsslgwalkalagvlsdlfalfGYtkrwylvlsallgs..allyglLpakessakvaalliflaalakalidvladalyveriRrspaagpsLvslvwgasllGglissvlsGpl 181
                 sf+ k    i+l+    kGi   +v  a + + td     +gl++ar++++ +l+ ++w++k l+g++sd+ +l G  + +y+v+ +++g+  +  +  +p  +++  +a  +++l  ++ al dv++da+  e+ R  p  +  L+ l+ g+ ++ ++++s+l+G +
  MMETSP1137-20121227|4119_1 304 SFGAKFLAMIFLSGGLSKGIGeAMVTFAAQYLYTDSppsgFGLTAARVAAVNSLVHIPWVIKSLYGIVSDTTPLCGLHRTPYVVIGGVVGAcaFAFLVGMP--THMXMLACTMLALVQFSFALPDVMVDAVLAEKTRSHPQHATDLQVLTMGSFGVCSIVGSMLKGQI 469
                 7888888889999999*****9999999999999855666**************************************************64333333344..66667777788899*************************************************87 PP

  == domain 2    score: 106.4 bits;  conditional E-value: 8.8e-35
   TIGR00788 285 lgPefsgtvklvvnlgslagvvvvdrflkllplRlvfgltavlltlsslfdlilvkrlNlaiGisdevfvlgdsiilevlaqlkfmPvlvllarlcPsGsEssvfalLasilhlgsvvssalGvlLmelig.itsdnsnalwllillhilapllplplly.llPrledvidke 455
                 + P+f+g   +v     l   +v++r+l    +R +f  t++ l +  l+dli v+rlNl+iG++d++f+lg  i+   ++ ++ +P+ vl+arlcP    ++ fal ++ lhlgs ++s +G+++  l+g +    +++  +l+++ +l+  lpl l+  llP  ++  d +
  MMETSP1137-20121227|4119_1 614 FSPQFVGALDVVARGTFLIALGVYNRYLSSWRYRSIFATTQLALVVVNLLDLIWVTRLNLSIGMPDTAFALGAEILQPLVDRFSLIPLFVLVARLCPAEAQGTAFALNMGLLHLGSNIGSYVGMGILSLLGgVEPPAFENIGVLVTIRSLTRALPLLLIPfLLPSGSPMEDAT 786
                 78************9999999*************************************************************************************************************9556679**********************88***655555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (808 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       114  (0.0277913); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.18s 00:00:00.70 Elapsed: 00:00:00.98
# Mc/sec: 1088.24
//
Query:       MMETSP1137-20121227|4120_1  [L=113]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (113 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       103  (0.0251097); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.16s 00:00:00.31 Elapsed: 00:00:00.26
# Mc/sec: 573.64
//
Query:       MMETSP1137-20121227|4122_1  [L=67]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (67 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        81  (0.0197465); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.18s 00:00:00.30 Elapsed: 00:00:00.27
# Mc/sec: 327.53
//
Query:       MMETSP1137-20121227|4123_1  [L=294]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (294 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       136  (0.0331546); expected 82.0 (0.02)
Passed bias filter:                      122  (0.0297416); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.19s 00:00:00.45 Elapsed: 00:00:00.52
# Mc/sec: 746.25
//
Query:       MMETSP1137-20121227|4124_1  [L=154]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (154 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        46  (0.011214); expected 82.0 (0.02)
Passed bias filter:                       42  (0.0102389); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.12s 00:00:00.27 Elapsed: 00:00:00.27
# Mc/sec: 752.83
//
Query:       MMETSP1137-20121227|4126_1  [L=368]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (368 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       104  (0.0253535); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.16s 00:00:00.42 Elapsed: 00:00:00.27
# Mc/sec: 1798.96
//
Query:       MMETSP1137-20121227|4127_1  [L=36]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (36 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        33  (0.00804486); expected 82.0 (0.02)
Passed bias filter:                       31  (0.00755729); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.16s 00:00:00.26 Elapsed: 00:00:00.46
# Mc/sec: 103.30
//
Query:       MMETSP1137-20121227|4128_1  [L=657]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (657 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       133  (0.0324232); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.12s 00:00:00.58 Elapsed: 00:00:00.64
# Mc/sec: 1354.95
//
Query:       MMETSP1137-20121227|4129_1  [L=219]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (219 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        77  (0.0187713); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.16s 00:00:00.36 Elapsed: 00:00:00.76
# Mc/sec: 380.34
//
Query:       MMETSP1137-20121227|4130_1  [L=883]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   4.8e-124  395.3   0.0    1.9e-09   35.0   0.0   14.4 14  TIGR00756 PPR: pentatricopeptide repeat domain
     0.0099   13.0   0.5          6    3.9   0.0    4.6  7  TIGR00884 guaA_Cterm: GMP synthase (glutamine-hydrolyzing), C-terminal domain
  ------ inclusion threshold ------
       0.99    7.6   9.3        9.5    4.5   0.0    5.3  6  TIGR02675 tape_meas_nterm: tape measure domain


Domain annotation for each model (and alignments):
>> TIGR00756  PPR: pentatricopeptide repeat domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   0.0   4.5e-08   6.2e-05       3      34 ..     368     399 ..     368     400 .. 0.97
   2 !   25.7   0.0   1.2e-09   1.7e-06       1      35 []     401     435 ..     401     435 .. 0.97
   3 !   31.9   0.0   1.4e-11   1.9e-08       1      34 [.     436     469 ..     436     470 .. 0.97
   4 !   32.7   0.0   7.3e-12     1e-08       1      34 [.     471     504 ..     471     505 .. 0.95
   5 !   35.0   0.0   1.4e-12   1.9e-09       2      35 .]     507     540 ..     506     540 .. 0.97
   6 !   26.6   0.0   6.4e-10   8.7e-07       2      35 .]     542     575 ..     541     575 .. 0.97
   7 !   31.7   0.0   1.6e-11   2.2e-08       1      35 []     576     610 ..     576     610 .. 0.97
   8 !   26.4   0.0   7.2e-10   9.9e-07       1      35 []     611     645 ..     611     645 .. 0.97
   9 !   11.3   0.0   4.7e-05     0.064       2      34 ..     647     679 ..     646     680 .. 0.90
  10 !   31.2   0.0   2.3e-11   3.1e-08       2      35 .]     682     715 ..     681     715 .. 0.97
  11 !   25.3   0.0   1.7e-09   2.3e-06       2      34 ..     717     749 ..     716     750 .. 0.97
  12 !   24.8   0.0   2.4e-09   3.2e-06       1      34 [.     751     784 ..     751     785 .. 0.92
  13 !   33.5   0.1   4.1e-12   5.6e-09       1      35 []     786     820 ..     786     820 .. 0.98
  14 !   18.5   0.0   2.4e-07   0.00033       1      35 []     821     855 ..     821     855 .. 0.97

  Alignments for each domain:
  == domain 1    score: 20.8 bits;  conditional E-value: 4.5e-08
   TIGR00756   3 yntlisglckagrveeAlelfdeMkergivPd 34 
                 yn+li  l k++++ eA++++ eMk++g++P+
  MMETSP1137-20121227|4130_1 368 YNALILWLKKNKQWGEAIKILSEMKAAGVRPS 399
                 9******************************8 PP

  == domain 2    score: 25.7 bits;  conditional E-value: 1.2e-09
   TIGR00756   1 vtyntlisglckagrveeAlelfdeMkergivPda 35 
                 v+yn++i++++ka++++ A+e+++ +  +g+vPd+
  MMETSP1137-20121227|4130_1 401 VSYNSVIDACGKARQLKLAFEMLEHIANDGLVPDT 435
                 79*******************************96 PP

  == domain 3    score: 31.9 bits;  conditional E-value: 1.4e-11
   TIGR00756   1 vtyntlisglckagrveeAlelfdeMkergivPd 34 
                 v+y++li++++ka ++e A++l+ +Mk++g++P+
  MMETSP1137-20121227|4130_1 436 VSYTSLIDACGKAQQLERAVDLLGQMKAAGVRPN 469
                 79*******************************9 PP

  == domain 4    score: 32.7 bits;  conditional E-value: 7.3e-12
   TIGR00756   1 vtyntlisglckagrveeAlelfdeMkergivPd 34 
                 +tyn+li++++ka +v+ A+e++++M+++gi+ +
  MMETSP1137-20121227|4130_1 471 FTYNALIDACAKAAEVDRAFEVLQQMQAEGIRAN 504
                 69*****************************987 PP

  == domain 5    score: 35.0 bits;  conditional E-value: 1.4e-12
   TIGR00756   2 tyntlisglckagrveeAlelfdeMkergivPda 35 
                 ty++li++++k+ ++e A+ ++++M+++g++P++
  MMETSP1137-20121227|4130_1 507 TYTSLIDACGKSQQIERAFMVLQQMQSEGVKPNT 540
                 9*******************************96 PP

  == domain 6    score: 26.6 bits;  conditional E-value: 6.4e-10
   TIGR00756   2 tyntlisglckagrveeAlelfdeMkergivPda 35 
                 ty++l+++++k+ +++ A+++++ M+++ + P++
  MMETSP1137-20121227|4130_1 542 TYTCLVDACGKSQQLDRAFDVLRMMEAASVQPNT 575
                 9*******************************96 PP

  == domain 7    score: 31.7 bits;  conditional E-value: 1.6e-11
   TIGR00756   1 vtyntlisglckagrveeAlelfdeMkergivPda 35 
                 +tyn+li++++ka++++ A+ + +eM+ +g++Pda
  MMETSP1137-20121227|4130_1 576 HTYNALIDACGKARQLDRAFAVAQEMQLAGVRPDA 610
                 69*******************************96 PP

  == domain 8    score: 26.4 bits;  conditional E-value: 7.2e-10
   TIGR00756   1 vtyntlisglckagrveeAlelfdeMkergivPda 35 
                 v++++l+++++++ ++e A+e+ ++M+ +g++P++
  MMETSP1137-20121227|4130_1 611 VSFTCLVDACGRSMQIERAMEVVQQMQQAGLRPNT 645
                 79*******************************96 PP

  == domain 9    score: 11.3 bits;  conditional E-value: 4.7e-05
   TIGR00756   2 tyntlisglckagrveeAlelfdeMkergivPd 34 
                 ++++li++++k+ ++e A+ +++ M   g+ P+
  MMETSP1137-20121227|4130_1 647 AFTSLIDACGKSLDLERAFGVMQYMTQIGVPPN 679
                 69***********************88788777 PP

  == domain 10    score: 31.2 bits;  conditional E-value: 2.3e-11
   TIGR00756   2 tyntlisglckagrveeAlelfdeMkergivPda 35 
                 ty++li+++++a ++e A+ +f+ M+  g++P++
  MMETSP1137-20121227|4130_1 682 TYTSLIDACGRAQQLEQAFLVFEHMHQLGVSPNT 715
                 9*******************************96 PP

  == domain 11    score: 25.3 bits;  conditional E-value: 1.7e-09
   TIGR00756   2 tyntlisglckagrveeAlelfdeMkergivPd 34 
                 t++tli++++k  ++e Al +++ M +++++Pd
  MMETSP1137-20121227|4130_1 717 TFTTLINACAKCANLERALAVLQMMYASNVKPD 749
                 9*******************************9 PP

  == domain 12    score: 24.8 bits;  conditional E-value: 2.4e-09
   TIGR00756   1 vtyntlisglckagrveeAlelfdeMkergivPd 34 
                 +ty++li+++++  +v+ A+el+ +M+ + +  +
  MMETSP1137-20121227|4130_1 751 ITYTALINACGRTQQVDRAFELLAQMRQHSLQAN 784
                 69*************************9988766 PP

  == domain 13    score: 33.5 bits;  conditional E-value: 4.1e-12
   TIGR00756   1 vtyntlisglckagrveeAlelfdeMkergivPda 35 
                 vtyn++i+ +ckag+++ Al  + +M + g++Pd+
  MMETSP1137-20121227|4130_1 786 VTYNAVIDMCCKAGDFNRALATMYQMWSVGVKPDV 820
                 7********************************96 PP

  == domain 14    score: 18.5 bits;  conditional E-value: 2.4e-07
   TIGR00756   1 vtyntlisglckagrveeAlelfdeMkergivPda 35 
                 +t+n+l+ ++cka   e    l+ +M+e  +vP+a
  MMETSP1137-20121227|4130_1 821 ITFNMLLQACCKADLEEQLYALLASMRELHVVPNA 855
                 69*******************************96 PP

>> TIGR00884  guaA_Cterm: GMP synthase (glutamine-hydrolyzing), C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0      0.55   7.6e+02     231     256 ..     383     408 ..     376     428 .. 0.72
   2 !    3.2   0.0    0.0072       9.8     220     255 ..     477     512 ..     451     524 .. 0.79
   3 !    3.9   0.0    0.0044         6     209     255 ..     501     547 ..     493     553 .. 0.83
   4 ?   -1.5   0.0      0.19   2.6e+02     221     255 ..     583     617 ..     566     633 .. 0.81
   5 ?   -0.3   0.0     0.086   1.2e+02     221     256 ..     688     723 ..     679     747 .. 0.85
   6 ?   -2.4   0.0      0.36     5e+02     214     257 ..     751     794 ..     733     808 .. 0.72
   7 ?   -1.1   0.0      0.15     2e+02     227     255 ..     799     827 ..     771     835 .. 0.78

  Alignments for each domain:
  == domain 1    score: -3.0 bits;  conditional E-value: 0.55
   TIGR00884 231 qafavlldvksvGvkGdkrtydkvva 256
                  a  +l ++k+ Gv+    +y+ v+ 
  MMETSP1137-20121227|4130_1 383 EAIKILSEMKAAGVRPSIVSYNSVID 408
                 56778899999999999999998875 PP

  == domain 2    score: 3.2 bits;  conditional E-value: 0.0072
   TIGR00884 220 lkkagleeklwqafavlldvksvGvkGdkrtydkvv 255
                 + +     ++ +af vl ++++ G++ ++rty  ++
  MMETSP1137-20121227|4130_1 477 IDACAKAAEVDRAFEVLQQMQAEGIRANTRTYTSLI 512
                 445555678889********************9987 PP

  == domain 3    score: 3.9 bits;  conditional E-value: 0.0044
   TIGR00884 209 vrkadaiveeelkkagleeklwqafavlldvksvGvkGdkrtydkvv 255
                 +r     ++  + + g ++++ +af vl +++s Gvk ++ ty  +v
  MMETSP1137-20121227|4130_1 501 IRANTRTYTSLIDACGKSQQIERAFMVLQQMQSEGVKPNTATYTCLV 547
                 5666666777788889999**********************998776 PP

  == domain 4    score: -1.5 bits;  conditional E-value: 0.19
   TIGR00884 221 kkagleeklwqafavlldvksvGvkGdkrtydkvv 255
                  + g  ++l +afav  +++  Gv+ d+ ++  +v
  MMETSP1137-20121227|4130_1 583 DACGKARQLDRAFAVAQEMQLAGVRPDAVSFTCLV 617
                 55667788999****************99998776 PP

  == domain 5    score: -0.3 bits;  conditional E-value: 0.086
   TIGR00884 221 kkagleeklwqafavlldvksvGvkGdkrtydkvva 256
                  + g  ++l qaf v+ +++  Gv  ++ t+ +++ 
  MMETSP1137-20121227|4130_1 688 DACGRAQQLEQAFLVFEHMHQLGVSPNTATFTTLIN 723
                 566778999******************999999886 PP

  == domain 6    score: -2.4 bits;  conditional E-value: 0.36
   TIGR00884 214 aiveeelkkagleeklwqafavlldvksvGvkGdkrtydkvval 257
                   ++  +++ g ++++ +af  l +++   ++ ++ ty+ v+ +
  MMETSP1137-20121227|4130_1 751 ITYTALINACGRTQQVDRAFELLAQMRQHSLQANTVTYNAVIDM 794
                 33444566667778888888888888888888888888888765 PP

  == domain 7    score: -1.1 bits;  conditional E-value: 0.15
   TIGR00884 227 eklwqafavlldvksvGvkGdkrtydkvv 255
                  +  +a a + ++ svGvk d+ t+++++
  MMETSP1137-20121227|4130_1 799 GDFNRALATMYQMWSVGVKPDVITFNMLL 827
                 4667889999************9999865 PP

>> TIGR02675  tape_meas_nterm: tape measure domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.0      0.14     2e+02      11      30 ..     447     466 ..     441     467 .. 0.89
   2 ?    4.5   0.0    0.0069       9.5       3      29 ..     474     500 ..     473     504 .. 0.88
   3 ?    3.2   0.2     0.018        24      11      30 ..     517     536 ..     510     537 .. 0.86
   4 ?   -1.8   0.0      0.65   8.9e+02      30      58 ..     562     589 ..     558     593 .. 0.87
   5 ?   -1.7   0.0       0.6   8.3e+02      14      29 ..     625     640 ..     620     661 .. 0.82
   6 ?   -3.5   0.0       2.1   2.9e+03      15      30 ..     801     816 ..     797     829 .. 0.75

  Alignments for each domain:
  == domain 1    score: 0.3 bits;  conditional E-value: 0.14
   TIGR02675  11 saeeadgaliqlsQmlasGk 30 
                  a+++++a   l+Qm a+G+
  MMETSP1137-20121227|4130_1 447 KAQQLERAVDLLGQMKAAGV 466
                 5899**************97 PP

  == domain 2    score: 4.5 bits;  conditional E-value: 0.0069
   TIGR02675   3 daaaasGasaeeadgaliqlsQmlasG 29 
                 +a++ + a a+e+d+a++ l+Qm+a G
  MMETSP1137-20121227|4130_1 474 NALIDACAKAAEVDRAFEVLQQMQAEG 500
                 6777778899***************99 PP

  == domain 3    score: 3.2 bits;  conditional E-value: 0.018
   TIGR02675  11 saeeadgaliqlsQmlasGk 30 
                  ++++++a++ l+Qm++ G+
  MMETSP1137-20121227|4130_1 517 KSQQIERAFMVLQQMQSEGV 536
                 46899*************97 PP

  == domain 4    score: -1.8 bits;  conditional E-value: 0.65
   TIGR02675  30 klraeeinslleavPgalqalAkamGvta 58 
                 +lr++e  s++ +    ++al +a G+++
  MMETSP1137-20121227|4130_1 562 VLRMMEAASVQPNTH-TYNALIDACGKAR 589
                 799******999988.8999999999886 PP

  == domain 5    score: -1.7 bits;  conditional E-value: 0.6
   TIGR02675  14 eadgaliqlsQmlasG 29 
                 ++++a++ ++Qm+++G
  MMETSP1137-20121227|4130_1 625 QIERAMEVVQQMQQAG 640
                 6788999999999988 PP

  == domain 6    score: -3.5 bits;  conditional E-value: 2.1
   TIGR02675  15 adgaliqlsQmlasGk 30 
                  ++al  + Qm++ G+
  MMETSP1137-20121227|4130_1 801 FNRALATMYQMWSVGV 816
                 6788888999999885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (883 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       123  (0.0299854); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.56u 0.16s 00:00:00.72 Elapsed: 00:00:00.73
# Mc/sec: 1596.53
//
Query:       MMETSP1137-20121227|4131_1  [L=1210]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1210 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        62  (0.0151146); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.66u 0.14s 00:00:00.80 Elapsed: 00:00:00.59
# Mc/sec: 2706.90
//
Query:       MMETSP1137-20121227|4132_1  [L=223]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (223 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       179  (0.0436373); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.15s 00:00:00.35 Elapsed: 00:00:00.28
# Mc/sec: 1051.20
//
Query:       MMETSP1137-20121227|4133_1  [L=278]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (278 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        89  (0.0216967); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.16s 00:00:00.40 Elapsed: 00:00:00.46
# Mc/sec: 797.67
//
Query:       MMETSP1137-20121227|4134_1  [L=390]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (390 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        91  (0.0221843); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.15s 00:00:00.43 Elapsed: 00:00:00.38
# Mc/sec: 1354.62
//
Query:       MMETSP1137-20121227|4135_1  [L=416]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   6.9e-131  434.2   0.0   9.8e-131  433.7   0.0    1.2  1  TIGR01289 LPOR: light-dependent protochlorophyllide reductase
    1.1e-12   45.6   0.0      2e-12   44.8   0.0    1.4  1  TIGR01963 PHB_DH: 3-hydroxybutyrate dehydrogenase
    2.8e-12   44.7   0.0    4.1e-12   44.1   0.0    1.2  1  TIGR01830 3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase
    1.5e-10   39.0   0.0    2.4e-10   38.3   0.0    1.3  1  TIGR01829 AcAcCoA_reduct: acetoacetyl-CoA reductase
    3.4e-10   36.8   0.0    4.6e-10   36.3   0.0    1.1  1  TIGR02632 RhaD_aldol-ADH: rhamnulose-1-phosphate aldolase/alcohol dehydrogenase
    6.2e-08   30.3   0.0    9.2e-08   29.7   0.0    1.1  1  TIGR01832 kduD: 2-deoxy-D-gluconate 3-dehydrogenase
      2e-05   22.0   0.0      3e-05   21.4   0.0    1.2  1  TIGR02415 23BDH: acetoin reductases
    9.6e-05   19.4   0.0    0.00015   18.8   0.0    1.2  1  TIGR02685 pter_reduc_Leis: pteridine reductase
    0.00023   18.4   0.0    0.00039   17.7   0.0    1.3  1  TIGR03206 benzo_BadH: 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase
    0.00034   17.9   0.0    0.00051   17.3   0.0    1.2  1  TIGR01831 fabG_rel: putative 3-oxoacyl-(acyl-carrier-protein) reductase
     0.0034   14.6   0.0     0.0057   13.9   0.0    1.3  1  TIGR01500 sepiapter_red: sepiapterin reductase


Domain annotation for each model (and alignments):
>> TIGR01289  LPOR: light-dependent protochlorophyllide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  433.7   0.0  2.6e-133  9.8e-131       3     314 ..      82     413 ..      80     414 .. 0.97

  Alignments for each domain:
  == domain 1    score: 433.7 bits;  conditional E-value: 2.6e-133
   TIGR01289   3 kptviitgassglglaaakalvekgkwhvvmacrdlekaekaakslglpkdsytilkldlasldsvrkfveqfresgrsldalvcnaavylpllkeplfsadgyelsvatnhlghfllsnllledlkksdekdkrliilgsvtanskelagk.vpikadlgdlsgleaglkaaniamidgkefkaakaykdsklcnmltvrelhrryhdetgivfaslypgcvadtglfrehlplfrtlfppfqkyitkgyvseeeagkrlaqvvadpklkksgvywswgkrq......................esfeqelseevsddekakklwelseklvgl 314
                 k  +++tgassglg  a+++l+e gkwhvvmacrd++ka+ +a++lg+ k++yt++kl+l+ l svrkf +++ +sgr+ d+lvcnaavylp    p+++ dg+e s++ nhlghfll+nl+l+ + ks+   kr++i+gs+t+n+++l+g  v ++adlgdl+gle g++++ ++m dgk+f++akaykd+klcnmlt++elhrryh++tgi+f+slypgc+a+t+lfr++   f+  fp fqky+ +gyvseeeag+rlaqvv+ ++  ksgvywsw+  +                      e fe els ++sd   a ++w++seklvgl
  MMETSP1137-20121227|4135_1  82 KRMAVVTGASSGLGKSATRSLIESGKWHVVMACRDVQKAKAVAEELGFDKGDYTVMKLELGDLSSVRKFAKDYISSGRPCDCLVCNAAVYLPNQPGPTYTKDGFEESMGVNHLGHFLLANLMLDHIAKSE--FKRVVIVGSITGNTNTLGGGfVWPRADLGDLKGLENGVRSP-TPMADGKPFNGAKAYKDAKLCNMLTINELHRRYHESTGITFSSLYPGCIAETPLFRQKRDWFKIWFPLFQKYVIGGYVSEEEAGDRLAQVVSSDECSKSGVYWSWNGGAktvatlgdgfgkpptgaggsggEIFEGELSIDASDPVLAAQIWDISEKLVGL 413
                 6789*************************************************************************************************************************98876..58***************8752778*****************.7********************************************************************************************************97666799****************9999***************************9 PP

>> TIGR01963  PHB_DH: 3-hydroxybutyrate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.8   0.0   5.3e-15     2e-12       1     141 [.      82     224 ..      82     228 .. 0.94

  Alignments for each domain:
  == domain 1    score: 44.8 bits;  conditional E-value: 5.3e-15
   TIGR01963   1 kkvalvtGaasGiglaiakelaaaGa.kvvvndleeeaaeaaakeleeaggevlalkadvtkeeeiadlieavaaefgsldiLvnnAGiqhv.apieefptekfekiiavnltsafhtiraalpimkkqgwGriiniasvhgl 141
                 k++a+vtGa+sG+g+  +++l + G  +vv+   + ++a+a+a+el    g+ + +k+++ + +++++  +   ++ +  d Lv nA +    +p   +  + fe+ + vn  + f + +  l ++ k+++ r++ ++s+ g 
  MMETSP1137-20121227|4135_1  82 KRMAVVTGASSGLGKSATRSLIESGKwHVVMACRDVQKAKAVAEELGFDKGDYTVMKLELGDLSSVRKFAKDYISSGRPCDCLVCNAAVYLPnQPGPTYTKDGFEESMGVNHLGHFLLANLMLDHIAKSEFKRVVIVGSITGN 224
                 589**********************7477777788999***************************************************986268899******************************************986 PP

>> TIGR01830  3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.1   0.0   1.1e-14   4.1e-12       1     141 [.      85     226 ..      85     231 .. 0.93

  Alignments for each domain:
  == domain 1    score: 44.1 bits;  conditional E-value: 1.1e-14
   TIGR01830   1 alvtGasrgiGkaiakklakegakvviterskeekaeelaeelkeagvkaaavkldvsdeeevkelveeveeelgeidilvnnAGitrDk.lllrmkeedwdevikvnLkgvfnvtkavlkkmikkrsGriinissvvgllG 141
                 a+vtGas g+Gk+ +++l ++g   v++  ++ +ka+++aeel    ++++++kl++ d  +v+++ ++ +++    d lv+nA +   +      +++ ++e + vn  g f +++ +l ++ k+ + r++ ++s+ g + 
  MMETSP1137-20121227|4135_1  85 AVVTGASSGLGKSATRSLIESGKWHVVMACRDVQKAKAVAEELGFDKGDYTVMKLELGDLSSVRKFAKDYISSGRPCDCLVCNAAVYLPNqPGPTYTKDGFEESMGVNHLGHFLLANLMLDHIAKSEFKRVVIVGSITGNTN 226
                 79********************9777777889999********99999**************************************87551567899999*************************************99875 PP

>> TIGR01829  AcAcCoA_reduct: acetoacetyl-CoA reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.3   0.0   6.5e-13   2.4e-10       1     146 [.      83     229 ..      83     233 .. 0.92

  Alignments for each domain:
  == domain 1    score: 38.3 bits;  conditional E-value: 6.5e-13
   TIGR01829   1 rvalvtGglgGiGtaickrlakdGy.kvvanvapneerakewlqekevegfdvavvkadvssfeeakaavakveaelGpvdvlvnnaGitr.davfkkmtkeqWeevidtnlnsvfnvtrpviegmlergfGriinissvnGlkGqfG 146
                 r+a+vtG++ G+G++ ++ l++ G  +vv +++ + ++ak++++e ++ + d +v+k ++ +  + ++  ++  +   p d lv na +   ++     tk+ +ee + +n  + f +++ +++ +++ +f r++ + s+ G    +G
  MMETSP1137-20121227|4135_1  83 RMAVVTGASSGLGKSATRSLIESGKwHVVMACR-DVQKAKAVAEELGFDKGDYTVMKLELGDLSSVRKFAKDYISSGRPCDCLVCNAAVYLpNQPGPTYTKDGFEESMGVNHLGHFLLANLMLDHIAKSEFKRVVIVGSITGNTNTLG 229
                 78**********************626666666.99************************************************99999761556778999****************************************9876665 PP

>> TIGR02632  RhaD_aldol-ADH: rhamnulose-1-phosphate aldolase/alcohol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.3   0.0   1.2e-12   4.6e-10     414     543 ..      82     211 ..      76     227 .. 0.86

  Alignments for each domain:
  == domain 1    score: 36.3 bits;  conditional E-value: 1.2e-12
   TIGR02632 414 rrvalvtGgasGiGrevarrlvdeGa.hvvladldaeaaeavaaelvdkfGadkavalkldvtdeeavkaafaevalayGGvdivvnnaGiavskpleete.leeWdlnldilatGyflvareaarllrkqg 543
                 +r+a+vtG++sG+G+  +r l++ G  hvv+a  d ++a+ava+el   f ++    +kl++ d ++v++  ++   +    d +v na +   ++   t  ++ ++ ++ ++  G+fl+a+     + k +
  MMETSP1137-20121227|4135_1  82 KRMAVVTGASSGLGKSATRSLIESGKwHVVMACRDVQKAKAVAEELG--FDKGDYTVMKLELGDLSSVRKFAKDYISSGRPCDCLVCNAAVYLPNQPGPTYtKDGFEESMGVNHLGHFLLANLMLDHIAKSE 211
                 689**********************669*******************..88888899999*********988888888889**********997766666537789**************987666665555 PP

>> TIGR01832  kduD: 2-deoxy-D-gluconate 3-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.7   0.0   2.5e-10   9.2e-08       6     141 ..      83     221 ..      80     231 .. 0.87

  Alignments for each domain:
  == domain 1    score: 29.7 bits;  conditional E-value: 2.5e-10
   TIGR01832   6 kvalvtGantGlGqgiavglaeaGadivgvgiselsetqekvealG...rkflslkadladeeaakalvdeaveeagkidilvnnaGiir.redavefsekdwddvlnvnlkavfllsqavakkllkqGrkgkiiniasl 141
                 ++a+vtGa++GlG++ + +l e+G   v ++ ++++++++  e+lG     ++ +k++l d ++++++ ++ + +    d lv na +    +    +++  +++ + vn    fll++ +  ++ k+ +  +++ + s+
  MMETSP1137-20121227|4135_1  83 RMAVVTGASSGLGKSATRSLIESGKWHVVMACRDVQKAKAVAEELGfdkGDYTVMKLELGDLSSVRKFAKDYISSGRPCDCLVCNAAVYLpNQPGPTYTKDGFEESMGVNHLGHFLLANLMLDHIAKS-EFKRVVIVGSI 221
                 689*********************999999999999999888888844357999*******************************99976155678999999****************9998886555.57788777765 PP

>> TIGR02415  23BDH: acetoin reductases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   0.0   8.1e-08     3e-05       1     113 [.      83     197 ..      83     228 .. 0.85

  Alignments for each domain:
  == domain 1    score: 21.4 bits;  conditional E-value: 8.1e-08
   TIGR02415   1 kvalvtGaaqGiGkaiaerLakdG.favavadlneetaketakelkekgtkavavkldvsdkseveeaveqaveklGeldvlvnnaGval.vtpileiteeeleklynvnvkgvl 113
                 ++a+vtGa+ G+Gk+ ++ L++ G ++v++a  + ++ak++a+el  + ++  ++kl++ d s+v +  ++ +++    d lv na v l  +p  + t++ +e+   vn  g +
  MMETSP1137-20121227|4135_1  83 RMAVVTGASSGLGKSATRSLIESGkWHVVMACRDVQKAKAVAEELGFDKGDYTVMKLELGDLSSVRKFAKDYISSGRPCDCLVCNAAVYLpNQPGPTYTKDGFEESMGVNHLGHF 197
                 68*********************95677777777899********99999999***************9999999999********99752678889999999999999977755 PP

>> TIGR02685  pter_reduc_Leis: pteridine reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.0     4e-07   0.00015       3     100 ..      84     176 ..      82     202 .. 0.82

  Alignments for each domain:
  == domain 1    score: 18.8 bits;  conditional E-value: 4e-07
   TIGR02685   3 aalvtGaakriGrsiavklhqeGyrvvlhyrrsaeaasslaaelnaeransavvvkadlsnsasllssceeiidacfrafGr.cdvlvnnasafyptpl 100
                 +a+vtGa+  +G+s +  l + G   v+   r  ++a+++a+el  ++ + +v +k +l   +s+ +  ++ i +     Gr cd lv na+ + p   
  MMETSP1137-20121227|4135_1  84 MAVVTGASSGLGKSATRSLIESGKWHVVMACRDVQKAKAVAEELGFDKGDYTV-MKLELGDLSSVRKFAKDYISS-----GRpCDCLVCNAAVYLPNQP 176
                 69********************97777777888899**********9988765.688899999999999987766.....665***********98643 PP

>> TIGR03206  benzo_BadH: 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.0   1.1e-06   0.00039       4     141 ..      83     222 ..      81     234 .. 0.80

  Alignments for each domain:
  == domain 1    score: 17.7 bits;  conditional E-value: 1.1e-06
   TIGR03206   4 kvaivtgggggiggaicrrfaeegakvavldl.naeaaekvaaairekggkaeavavditdrasvdaavaaaeealgpvdvlvnnagwdvl.kpflktekaewerliainltgalymhhavlkgmverkagrivniasda 141
                 ++a+vtg + g+g +  r + e g    v+   + + a+ va+++    g+   ++ ++ d +sv        ++  p d lv na      +p     k  +e  + +n  g + +   +l+ + + +  r+v + s +
  MMETSP1137-20121227|4135_1  83 RMAVVTGASSGLGKSATRSLIESGKWHVVMACrDVQKAKAVAEELGFDKGDYTVMKLELGDLSSVRKFAKDYISSGRPCDCLVCNAAVYLPnQPGPTYTKDGFEESMGVNHLGHFLLANLMLDHIAKSEFKRVVIVGSIT 222
                 689*****************999987666654267899****************************99999999999******999765541444445566778888888888888777777777777777777766655 PP

>> TIGR01831  fabG_rel: putative 3-oxoacyl-(acyl-carrier-protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.0   1.4e-06   0.00051       2     139 ..      86     223 ..      85     231 .. 0.84

  Alignments for each domain:
  == domain 1    score: 17.3 bits;  conditional E-value: 1.4e-06
   TIGR01831   2 lvtgasrgigraialklaadgfeiavhyrsdradaeesvaairaqggnarllkfdvadrvavrevleadiaehgayygvvlnagiar.daafpalseedwdavietnldgfynvihplvmpmirarkggriitlasvsg 139
                 +vtgas g+g++ +  l  +g    v   +d  +a+++++++  + g+  ++k+++ d  +vr+  +  i++      +v na +   ++  p+ +++ ++  +  n  g + ++  l++  i   +  r++ + s++g
  MMETSP1137-20121227|4135_1  86 VVTGASSGLGKSATRSLIESGKWHVVMACRDVQKAKAVAEELGFDKGDYTVMKLELGDLSSVRKFAKDYISSGRPCDCLVCNAAVYLpNQPGPTYTKDGFEESMGVNHLGHF-LLANLMLDHIAKSEFKRVVIVGSITG 223
                 69***************99997777777788999*******************************99999999999999999999761445788999999888888877766.45667777888888888888888777 PP

>> TIGR01500  sepiapter_red: sepiapterin reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.0   1.5e-05    0.0057       2      75 ..      84     152 ..      83     164 .. 0.82

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 1.5e-05
   TIGR01500   2 lllvtGasrGfGrelaqelakrlkaegsvlvLlaRndeaLkeskaeieaevsalsvdlvsldleaakdvedllk 75 
                 +++vtGas G+G++  + l++   +    +v+  R+ +  k   +e++ ++ + +v +  l+l+  + v ++ k
  MMETSP1137-20121227|4135_1  84 MAVVTGASSGLGKSATRSLIE---SGKWHVVMACRDVQKAKAVAEELGFDKGDYTVMK--LELGDLSSVRKFAK 152
                 689**************9998...788899******************9888888765..56666666666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (416 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       131  (0.0319356); expected 82.0 (0.02)
Passed bias filter:                      131  (0.0319356); expected 82.0 (0.02)
Passed Vit filter:                        24  (0.0058508); expected 4.1 (0.001)
Passed Fwd filter:                        11  (0.00268162); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.37u 0.14s 00:00:00.51 Elapsed: 00:00:00.50
# Mc/sec: 1098.15
//
Query:       MMETSP1137-20121227|4136_1  [L=177]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (177 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        55  (0.0134081); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.13s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 834.36
//
Query:       MMETSP1137-20121227|4137_1  [L=219]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (219 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        88  (0.0214529); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.15s 00:00:00.34 Elapsed: 00:00:00.75
# Mc/sec: 385.41
//
Query:       MMETSP1137-20121227|4138_1  [L=458]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (458 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       100  (0.0243784); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.49u 0.14s 00:00:00.63 Elapsed: 00:00:00.64
# Mc/sec: 944.55
//
Query:       MMETSP1137-20121227|4139_1  [L=393]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0034   15.4  12.3      0.011   13.7   8.4    2.0  1  TIGR00880 2_A_01_02: multidrug resistance protein


Domain annotation for each model (and alignments):
>> TIGR00880  2_A_01_02: multidrug resistance protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   8.4   2.6e-06     0.011      40     117 ..     122     197 ..     117     228 .. 0.62

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 2.6e-06
   TIGR00880  40 lsqllfalssnitvliiarilqGfgaaaalvagaaliadiikeeersvalgllsagialgpilGpllGavlaqalgwr 117
                 + ++ +a+ss++++  +ar+l+G++aa + va  a + d   +++ s  l+l+sa+i+ g+++Gp+l a l ++l+ r
  MMETSP1137-20121227|4139_1 122 ALNVWTAMSSSMSSVTLARMLAGMFAASVPVAQ-AAVTDGGGQDTTS-RLALISAAISSGAVVGPALAASLSAFLTAR 197
                 67899********************99877766.6666665555433.356666666666666666666665444433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (393 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       160  (0.0390054); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.29u 0.17s 00:00:00.46 Elapsed: 00:00:00.68
# Mc/sec: 762.82
//
Query:       MMETSP1137-20121227|4140_1  [L=217]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0034   13.7   0.0     0.0044   13.3   0.0    1.1  1  TIGR01865 cas_Csn1: CRISPR-associated protein Cas9/Csn1, subtype II/NMEMI
     0.0087   14.0   0.2      0.013   13.4   0.2    1.2  1  TIGR02646 TIGR02646: TIGR02646 family protein


Domain annotation for each model (and alignments):
>> TIGR01865  cas_Csn1: CRISPR-associated protein Cas9/Csn1, subtype II/NMEMI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   0.0   2.1e-06    0.0044     626     658 ..     159     191 ..     151     199 .. 0.92

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 2.1e-06
   TIGR01865 626 eIDHIlPqSrikDDSisNkVLvlsseNqeKsdq 658
                  +DH++P+S+    S  N V +++s+N  K+ +
  MMETSP1137-20121227|4140_1 159 TVDHVVPRSKGGEKSWLNLVACCASCNMRKGSK 191
                 59***************************9875 PP

>> TIGR02646  TIGR02646: TIGR02646 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.2   6.3e-06     0.013      21      71 ..     144     188 ..     124     202 .. 0.81

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 6.3e-06
   TIGR02646  21 klQgglCayCeveielldkhieHfrpkeayrkltldwsNLlgsClaeskqd 71 
                    + +C yC+     +   ++H+ p+++  ++   w NL+++C + + + 
  MMETSP1137-20121227|4140_1 144 LRDNYRCQYCGA----AAATVDHVVPRSKGGEK--SWLNLVACCASCNMRK 188
                 556789*****9....8899********88776..6********9877664 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (217 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        68  (0.0165773); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.20u 0.16s 00:00:00.36 Elapsed: 00:00:00.31
# Mc/sec: 923.92
//
Query:       MMETSP1137-20121227|4141_1  [L=193]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (193 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        85  (0.0207216); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.12s 00:00:00.31 Elapsed: 00:00:00.35
# Mc/sec: 727.83
//
Query:       MMETSP1137-20121227|4142_1  [L=248]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (248 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       123  (0.0299854); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.16s 00:00:00.39 Elapsed: 00:00:00.26
# Mc/sec: 1258.97
//
Query:       MMETSP1137-20121227|4144_1  [L=210]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (210 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       138  (0.0336421); expected 82.0 (0.02)
Passed bias filter:                      101  (0.0246221); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.16s 00:00:00.36 Elapsed: 00:00:00.28
# Mc/sec: 955.78
//
Query:       MMETSP1137-20121227|4145_1  [L=362]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (362 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        75  (0.0182838); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.19s 00:00:00.47 Elapsed: 00:00:00.48
# Mc/sec: 995.42
//
Query:       MMETSP1137-20121227|4146_1  [L=94]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.026   12.3   0.1      0.027   12.3   0.1    1.2  1  TIGR02357 thia_yuaJ: putative proton-coupled thiamine transporter YuaJ


Domain annotation for each model (and alignments):
>> TIGR02357  thia_yuaJ: putative proton-coupled thiamine transporter YuaJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.1   6.5e-06     0.027      44      69 ..      39      64 ..       5      69 .. 0.89

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 6.5e-06
   TIGR02357 44 lrrGlkaglvaGlivGllklilgkay 69
                l+ G  aglvaGl+ Gl+ ++ + a+
  MMETSP1137-20121227|4146_1 39 LVAGEIAGLVAGLVAGLVAVAASPAA 64
                678999**************998655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (94 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       171  (0.041687); expected 82.0 (0.02)
Passed bias filter:                      116  (0.0282789); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.16u 0.18s 00:00:00.34 Elapsed: 00:00:00.32
# Mc/sec: 387.72
//
Query:       MMETSP1137-20121227|4147_1  [L=217]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.9e-12   43.3   0.0    8.9e-12   43.0   0.0    1.2  1  TIGR02150 IPP_isom_1: isopentenyl-diphosphate delta-isomerase


Domain annotation for each model (and alignments):
>> TIGR02150  IPP_isom_1: isopentenyl-diphosphate delta-isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.0   0.0   2.2e-15   8.9e-12      17      87 ..      45     115 ..      34     161 .. 0.83

  Alignments for each domain:
  == domain 1    score: 43.0 bits;  conditional E-value: 2.2e-15
   TIGR02150  17 aevhkketilHlAfSvflfdeegklLlqrraasKitfPgvwtNscCsHPlk..gelaaaairrllaeLgitae 87 
                  evh  ++  H+ + v+l de g+lLlqrr+++K t Pg+w  sc +H     g+l ++a++ l++eLg    
  MMETSP1137-20121227|4147_1  45 GEVHR-DGDWHRSVHVWLGDEMGRLLLQRRSEHKDTHPGLWDVSCAGHISAgdGSL-DTAQKELEEELGFAVG 115
                 46776.8889**************************************99965667.6**********98654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (217 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        76  (0.0185275); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.21u 0.13s 00:00:00.34 Elapsed: 00:00:00.31
# Mc/sec: 923.92
//
Query:       MMETSP1137-20121227|4148_1  [L=409]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (409 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        64  (0.0156021); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.15s 00:00:00.44 Elapsed: 00:00:00.64
# Mc/sec: 843.49
//
Query:       MMETSP1137-20121227|4149_1  [L=81]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.1e-13   46.5   0.0    7.5e-13   46.4   0.0    1.0  1  TIGR00093 TIGR00093: pseudouridine synthase


Domain annotation for each model (and alignments):
>> TIGR00093  TIGR00093: pseudouridine synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.4   0.0   1.8e-16   7.5e-13      29      88 ..       3      63 ..       1      75 [. 0.87

  Alignments for each domain:
  == domain 1    score: 46.4 bits;  conditional E-value: 1.8e-16
   TIGR00093 29 kklaavGRLDrdseGlllltddgelqhrlthpekevektYlvqvegsvtdedl.ealrkGv 88
                k+l+++GRLD  s+Glll t+dg l+  l++pe++v ++Y   v+g v   +l + l++Gv
  MMETSP1137-20121227|4149_1  3 KGLHPIGRLDCHSTGLLLWTTDGRLTRCLLDPEQQVPREYECVVKGRVLFPELqRMLASGV 63
                689*******************************************997544404556676 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (81 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        61  (0.0148708); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.13u 0.14s 00:00:00.27 Elapsed: 00:00:00.33
# Mc/sec: 323.97
//
Query:       MMETSP1137-20121227|4150_1  [L=179]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.024   12.2   3.6       0.03   11.9   2.5    1.2  1  TIGR03915 SAM_7_link_chp: probable DNA metabolism protein


Domain annotation for each model (and alignments):
>> TIGR03915  SAM_7_link_chp: probable DNA metabolism protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   2.5   7.2e-06      0.03      43     121 ..      70     149 ..      31     162 .. 0.66

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 7.2e-06
   TIGR03915  43 vvevetdeekaervakslkkklskealkqlyraflsedeereallyrllrrlfkegkkvledladpdvlrv.eelakkvs 121
                 +++  +++++ ++  ++  kk +keal+ ++ a+l  + e+ +++y+ lrr ++++++v+++ + +  +++ + +a +++
  MMETSP1137-20121227|4150_1  70 MEKGGSKKDRSKESSQKGGKKSKKEALSAVQIAMLQVEHEQLQTCYQALRREVEQKQDVVDHIQAERKHALlKIMAEQMD 149
                 2333445555555666677888999*****9999999*******************999998877765554044555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (179 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       431  (0.105071); expected 82.0 (0.02)
Passed bias filter:                      124  (0.0302292); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.21u 0.12s 00:00:00.32 Elapsed: 00:00:00.33
# Mc/sec: 715.94
//
Query:       MMETSP1137-20121227|4151_1  [L=135]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (135 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        28  (0.00682594); expected 82.0 (0.02)
Passed bias filter:                       28  (0.00682594); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.15s 00:00:00.31 Elapsed: 00:00:00.89
# Mc/sec: 200.21
//
Query:       MMETSP1137-20121227|4152_1  [L=267]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-23   81.7   0.1    2.2e-23   81.0   0.1    1.3  1  TIGR02349 DnaJ_bact: chaperone protein DnaJ
      2e-17   60.7   0.1    2.7e-17   60.3   0.1    1.2  1  TIGR03835 termin_org_DnaJ: terminal organelle assembly protein TopJ
    0.00095   17.1   0.3    0.00095   17.1   0.2    1.5  2  TIGR00714 hscB: Fe-S protein assembly co-chaperone HscB
  ------ inclusion threshold ------
      0.018   12.4   0.3        2.1    5.6   0.0    2.3  2  TIGR03446 mycothiol_Mca: mycothiol conjugate amidase Mca


Domain annotation for each model (and alignments):
>> TIGR02349  DnaJ_bact: chaperone protein DnaJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.0   0.1   2.1e-26   2.2e-23       2      87 ..       5      96 ..       4     137 .. 0.77

  Alignments for each domain:
  == domain 1    score: 81.0 bits;  conditional E-value: 2.1e-26
   TIGR02349  2 YYeiLgvskdAseeeikkAYrklakkyHPDrnkgek.eaeekfkeineAyevLsdeekraqYDqfghagleggaggggagfegfea.....s 87
                +Ye+Lg+++dA++++i+kAYr+la ++HPD+n +++ +aee fk+ ++ y vLsd++ r+ YD   +a l+gg+g ++++++++e+     +
  MMETSP1137-20121227|4152_1  5 HYEVLGLPRDAQDDDIRKAYRRLALQHHPDKNLDDPaAAEEAFKQLQQSYAVLSDPNERSWYDAHREAILRGGTGLASDDATESESgvnlwA 96
                6*******************************9976267999**********************9999999987664444443332333331 PP

>> TIGR03835  termin_org_DnaJ: terminal organelle assembly protein TopJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.3   0.1   2.6e-20   2.7e-17       2      65 ..       3      68 ..       2      92 .. 0.93

  Alignments for each domain:
  == domain 1    score: 60.3 bits;  conditional E-value: 2.6e-20
   TIGR03835  2 rDyyevLgidrDadeqeikkafrkLakkyhPDrnka..adaakifaeineandvLsnPkkraryDk 65
                r +yevLg+ rDa++++i+ka+r+La ++hPD+n +  a a++ f+ +  ++ vLs+P+ r  yD 
  MMETSP1137-20121227|4152_1  3 RCHYEVLGLPRDAQDDDIRKAYRRLALQHHPDKNLDdpAAAEEAFKQLQQSYAVLSDPNERSWYDA 68
                779*******************************988778899*********************96 PP

>> TIGR00714  hscB: Fe-S protein assembly co-chaperone HscB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.2   9.3e-07   0.00095       7      56 ..      19      66 ..      14      87 .. 0.91
   2 ?   -3.2   0.0       1.7   1.7e+03      99     122 ..     185     208 ..     178     211 .. 0.59

  Alignments for each domain:
  == domain 1    score: 17.1 bits;  conditional E-value: 9.3e-07
   TIGR00714  7 aLrkryrklQkqyHPDvsksaqeqaaalqqStelNqAykTLkdplkRaey 56
                 +rk yr+l  q+HPD  k+  + aaa +   +l q y  L dp  R+ y
  MMETSP1137-20121227|4152_1 19 DIRKAYRRLALQHHPD--KNLDDPAAAEEAFKQLQQSYAVLSDPNERSWY 66
                5799************..9999999999999*************999866 PP

  == domain 2    score: -3.2 bits;  conditional E-value: 1.7
   TIGR00714  99 aaleklkkkvkkeiqsllaalvea 122
                 +a+ek +++ + e +++l+ lv a
  MMETSP1137-20121227|4152_1 185 RAMEKENNRARSEAKKKLNDLVRA 208
                 555566666666666666666655 PP

>> TIGR03446  mycothiol_Mca: mycothiol conjugate amidase Mca
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   0.0    0.0021       2.1     129     206 ..     108     188 ..     103     201 .. 0.71
   2 ?    5.0   0.0    0.0034       3.5     102     133 ..     198     229 ..     193     240 .. 0.90

  Alignments for each domain:
  == domain 1    score: 5.6 bits;  conditional E-value: 0.0021
   TIGR03446 129 denGGyphpdhikvhkvsveafeaagdperypeaG...epwevlklyye..kgfirerlealheelaerGkespyaewlerwk 206
                 de+GG+          +s +   a +d+e +pe G   ++w+  +l+y   ++f+ +r  a ++++ +r   +p +++  +++
  MMETSP1137-20121227|4152_1 108 DEDGGFYAVYSSAFAAISEAELCADADAETAPEFGrsdASWAHIRLFYAywESFTTKRSCASADVYDTRQ--APNRQVRRAME 188
                 67777777766777778888888999********976678******9863379**999999888887664..44444333333 PP

  == domain 2    score: 5.0 bits;  conditional E-value: 0.0034
   TIGR03446 102 aledleeaaeelvrvvrefrphvivtydenGG 133
                 a+++l++ +++lv  vr+  p+v+  y e GG
  MMETSP1137-20121227|4152_1 198 AKKKLNDLVRALVAYVRKRDPRVVNXYIEIGG 229
                 778899999********************999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (267 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       190  (0.0463189); expected 82.0 (0.02)
Passed bias filter:                      132  (0.0321794); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.27u 0.17s 00:00:00.44 Elapsed: 00:00:00.51
# Mc/sec: 691.00
//
Query:       MMETSP1137-20121227|4153_1  [L=710]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (710 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        78  (0.0190151); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.16s 00:00:00.60 Elapsed: 00:00:01.27
# Mc/sec: 737.89
//
Query:       MMETSP1137-20121227|4154_1  [L=391]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0075   13.4   1.7      0.031   11.4   0.1    2.3  3  TIGR03467 HpnE: squalene-associated FAD-dependent desaturase


Domain annotation for each model (and alignments):
>> TIGR03467  HpnE: squalene-associated FAD-dependent desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.0      0.02        83      22      46 ..      16      40 ..       7      64 .. 0.79
   2 ?   -2.4   0.0      0.12   4.8e+02     273     298 ..     202     227 ..     187     237 .. 0.72
   3 !   11.4   0.1   7.7e-06     0.031     395     424 ..     352     381 ..     337     386 .. 0.87

  Alignments for each domain:
  == domain 1    score: 0.1 bits;  conditional E-value: 0.02
   TIGR03467 22 vrvtllEarrqlGGRarsfedgslg 46
                ++ +l+E +r +GGR +  + ++  
  MMETSP1137-20121227|4154_1 16 IQLSLFEMGRGVGGRSATRRSREMP 40
                5789***********8877666554 PP

  == domain 2    score: -2.4 bits;  conditional E-value: 0.12
   TIGR03467 273 edlaaklaalesspIttvhlrldrev 298
                 +d+ a+l++l+++p+t+  l ++ + 
  MMETSP1137-20121227|4154_1 202 HDALAALSKLQHNPVTACLLAFEGDA 227
                 45688999999999999999998765 PP

  == domain 3    score: 11.4 bits;  conditional E-value: 7.7e-06
   TIGR03467 395 plpnlfLAGDwtatgyPATlEgAvrSGvqA 424
                 p  +++  GD+++ g   T+EgAv SG ++
  MMETSP1137-20121227|4154_1 352 PSARVAFCGDYVEGGRAGTVEGAVTSGLRT 381
                 55688999*******************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (391 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        58  (0.0141394); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.30u 0.18s 00:00:00.48 Elapsed: 00:00:00.55
# Mc/sec: 938.32
//
Query:       MMETSP1137-20121227|4155_1  [L=60]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        76  (0.0185275); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.35
# Mc/sec: 226.27
//
Query:       MMETSP1137-20121227|4156_1  [L=163]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (163 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        83  (0.020234); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.18s 00:00:00.36 Elapsed: 00:00:00.50
# Mc/sec: 430.28
//
Query:       MMETSP1137-20121227|4157_1  [L=542]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.2e-08   29.7   0.0    4.4e-08   29.2   0.0    1.1  1  TIGR03903 TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
     0.0001   19.6   0.0    0.00016   19.1   0.0    1.2  1  TIGR03724 arch_bud32: Kae1-associated kinase Bud32


Domain annotation for each model (and alignments):
>> TIGR03903  TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.2   0.0   2.1e-11   4.4e-08      15     117 ..     237     344 ..     224     353 .. 0.78

  Alignments for each domain:
  == domain 1    score: 29.2 bits;  conditional E-value: 2.1e-11
   TIGR03903  15 aaeeerlvaRFrReialCarL.shPnivaLlDsGeaedgllFavFeyveGrtlrevLaad.GaLpaaetg....rLmlqvLDalaaahdaGvvhRDLkPqnimvsaadv 117
                 a   + ++a + Re++l +++ +hP++ +     + + ++ +   e+ eG tlr+++ a+  aL + e      +++  v  +l + h + v+h DLkP+ni++s  + 
  MMETSP1137-20121227|4157_1 237 ALHSKSQRAEYLREVTLANNMpEHPHVAQYYRAWQ-DSNYFYVQMELCEGGTLRHLMEAEkAALMSLESElrvwEIVRHVSRGLQHIHVHAVMHCDLKPDNILISRDGS 344
                 23778899*********999868***999876655.55588889*************9872567666543212267889999**********************98775 PP

>> TIGR03724  arch_bud32: Kae1-associated kinase Bud32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.0   7.6e-08   0.00016      69     144 ..     273     361 ..     241     393 .. 0.81

  Alignments for each domain:
  == domain 1    score: 19.1 bits;  conditional E-value: 7.6e-08
   TIGR03724  69 peekkivmeyiegkklkdlleekel............ellkevGelvgklHkagivhgDlttsNiivkddklyli.DfGLgkkskeved 144
                  + + + me  eg +l++l+e+++             e++++v + + ++H + ++h Dl + Ni+++ d  + i D+G +   k   d
  MMETSP1137-20121227|4157_1 273 SNYFYVQMELCEGGTLRHLMEAEKAalmsleselrvwEIVRHVSRGLQHIHVHAVMHCDLKPDNILISRDGSFKIgDLGQAIAIKAWDD 361
                 4556788999999999999999887899999999999*****************************97665554437776665555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (542 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        53  (0.0129205); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.14s 00:00:00.53 Elapsed: 00:00:00.38
# Mc/sec: 1882.58
//
Query:       MMETSP1137-20121227|4158_1  [L=877]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.5e-29   98.5   0.0      4e-22   75.6   0.0    2.1  2  TIGR04121 DEXH_lig_assoc: DEXH box helicase, DNA ligase-associated
    1.6e-10   37.7   0.1    2.8e-10   36.9   0.1    1.4  1  TIGR03817 DECH_helic: helicase/secretion neighborhood putative DEAH-box helicase
    1.6e-10   38.2   0.0    3.9e-06   23.7   0.0    2.2  2  TIGR00614 recQ_fam: ATP-dependent DNA helicase, RecQ family
    7.6e-09   32.6   0.1    4.9e-06   23.3   0.0    2.1  2  TIGR00643 recG: ATP-dependent DNA helicase RecG
    3.3e-07   26.9   0.0    0.00088   15.6   0.0    2.1  2  TIGR01389 recQ: ATP-dependent DNA helicase RecQ
    0.00016   18.7   0.1      0.011   12.6   0.1    2.3  1  TIGR01587 cas3_core: CRISPR-associated helicase Cas3
     0.0052   13.8   0.1       0.15    9.0   0.0    2.7  3  TIGR03158 cas3_cyano: CRISPR-associated helicase Cas3, subtype CYANO
  ------ inclusion threshold ------
      0.046   10.5   0.0      0.077    9.7   0.0    1.2  1  TIGR03491 TIGR03491: putative RecB family nuclease, TM0106 family
      0.058   10.2   0.0       0.12    9.2   0.0    1.4  1  TIGR04095 dnd_restrict_1: DNA phosphorothioation system restriction enzyme
      0.075    9.4   0.0       0.14    8.5   0.0    1.3  1  TIGR00595 priA: primosomal protein N'
       0.12    7.9   0.1       0.18    7.3   0.0    1.2  1  TIGR02785 addA_Gpos: helicase-exonuclease AddAB, AddA subunit


Domain annotation for each model (and alignments):
>> TIGR04121  DEXH_lig_assoc: DEXH box helicase, DNA ligase-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.6   0.0   1.1e-24     4e-22      11     261 ..      70     309 ..      60     324 .. 0.73
   2 !   20.9   0.1   3.7e-08   1.4e-05     276     321 ..     354     399 ..     345     407 .. 0.88

  Alignments for each domain:
  == domain 1    score: 75.6 bits;  conditional E-value: 1.1e-24
   TIGR04121  11 gweprafQkevleaaeegesglliapTGaGKTlavflpslielaakekpkkglkvlyitPLkaLakdieralea.pieelgleirvelrtGDtssserarqrkkppdiLltTpEslaLllsskdaeklfkdlravvvDElHeLlgskRGdlleLaLarLrrlape....lrvvglsATvgnleeaaevllgeek..eekaklvkakekkalevesllpeeeeklPwaGhlglkaleevleeikkarttlvFtNtRsqa 261
                  +++++ Q    +a++++ + l+ apTG+GKT ++ l     l+   + + g k++yi+PLkaL ++  +  +a  +++lgl++  +  tGD + ++ra  +   ++iL tTpE+   +  + ++++++++++ v++DE+H Llg+ RG  le  ++r+r +a++    +r+vgls  ++n +++a++l   ++   + +  v   ++  lev+      ++  P    +    + ++l++ +  + tlvF+  R q+
  MMETSP1137-20121227|4158_1  70 HFNAVQTQI-FHTAYQTDANVLVGAPTGSGKTVTAILR----LV---RAHPGCKAVYIAPLKALVRERMQDWNAkFVKKLGLKM--QELTGDVTPDSRALAN---ATILATTPEKWDGVSRHWQQRAYVRKVSLVIIDEIH-LLGEERGPILEVIVSRMRYMAERqgqpVRIVGLSTAMANANDLADWLGIPQDslFNFKPSV---RPVPLEVHIAGFPGQHYCPRMAAMNKPCYRAILNH-SPDKPTLVFVSSRRQT 309
                 555444443.346789999*************987664....44...34479**************998887751678777765..689*******999765...68**********************************.889***************9886444449******************987776222222222...22222222222222455555555555555555544.3445677777777766 PP

  == domain 2    score: 20.9 bits;  conditional E-value: 3.7e-08
   TIGR04121 276 aleialhHgsldkeqRekveaalkagklravvcTssLdLGvDfgdv 321
                 a  i++hH+ l+++ R  ve+ + + ++ ++vcT++L  Gv f + 
  MMETSP1137-20121227|4158_1 354 AFGIGIHHAGLEDSDRILVEKLFLEQSIMVLVCTATLAWGVNFPAH 399
                 6679***************************************764 PP

>> TIGR03817  DECH_helic: helicase/secretion neighborhood putative DEAH-box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.9   0.1   7.4e-13   2.8e-10      41     223 ..      75     252 ..      67     367 .. 0.74

  Alignments for each domain:
  == domain 1    score: 36.9 bits;  conditional E-value: 7.4e-13
   TIGR03817  41 qaraaelah.aGehvvvatgtasGkslayllPvlsalaedpratalylaPtkalaadqlra..vkeleerdvraatydGdtpaeerewirekaryvltnPdmlhlgilpsharWakflralryvvvdechsyrGvfGshvalvlrrlrrlcaryGaePvfllasatsadpaaaasrliGleveavt 223
                 q+++ + a  +  +v v + t sGk+++    +l  ++++p+ +a+y+aP kal +++++    k +++ +++ + + Gd   ++r+ +  +a+++ t P+    g+ + h +   ++r++  v++de h      G  +  ++ r+r +++r G +Pv ++  +t+   a+  +  +G++   + 
  MMETSP1137-20121227|4158_1  75 QTQIFHTAYqTDANVLVGAPTGSGKTVT---AILRLVRAHPGCKAVYIAPLKALVRERMQDwnAKFVKKLGLKMQELTGDVTPDSRALA--NATILATTPEKW-DGVSR-HWQQRAYVRKVSLVIIDEIHLLGEERGPILEVIVSRMRYMAERQG-QPVRIVGLSTAMANANDLADWLGIPQDSLF 252
                 5555555541456899999*******97...577788999***************9988761156688899***************886..789999999975.56655.55566789**************9999*****************99.699998888888878777778888766554 PP

>> TIGR00614  recQ_fam: ATP-dependent DNA helicase, RecQ family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.7   0.0   1.1e-08   3.9e-06       3     139 ..      62     199 ..      60     203 .. 0.84
   2 !   12.3   0.0     3e-05     0.011     253     319 ..     357     433 ..     331     474 .. 0.71

  Alignments for each domain:
  == domain 1    score: 23.7 bits;  conditional E-value: 1.1e-08
   TIGR00614   3 lkkvfglesfrpvqlevinavlegr.dalvvmatGgGksLCyqlpavvs.dgl.tlvisPLisLmeDqvlqLkasdisatlLnsaqskeeakevladl.kdgklkllYvtPekvsksksllqkleerkkltliavDeahCi 139
                 +++ f +++f  vq ++ +++ +   ++lv  +tG Gk +   l  v   +g  ++ i+PL +L+++ ++  +a+ ++   L+ ++ +    +v+ d    ++  +l  tPek     +  q+    +k++l+++De+h +
  MMETSP1137-20121227|4158_1  62 FESIFSFSHFNAVQTQIFHTAYQTDaNVLVGAPTGSGKTVTAILRLVRAhPGCkAVYIAPLKALVRERMQDWNAKFVKKLGLKMQELTG---DVTPDSrALANATILATTPEKWDGVSRHWQQRAYVRKVSLVIIDEIHLL 199
                 6789******************99857777799******987776664314542788*************9999999988887666555...67777746688899*********999999999999************65 PP

  == domain 2    score: 12.3 bits;  conditional E-value: 3e-05
   TIGR00614 253 aaaYhagleesarkevqkkflrdeiqvvvatvafGmGinkpdvRfvi....hyslpks......iesYYqesGRaGR 319
                  + +hagle+s+r  v+k fl++ i v+v t     G+n p    v+    +y++  +      +    q +GRaGR
  MMETSP1137-20121227|4158_1 357 IGIHHAGLEDSDRILVEKLFLEQSIMVLVCTATLAWGVNFPAHLVVVkgteYYDAKTKryvdfpVTDVLQMMGRAGR 433
                 5679*************************999999999988766665222233332211222223455666666666 PP

>> TIGR00643  recG: ATP-dependent DNA helicase RecG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.3   0.0   1.3e-08   4.9e-06     258     370 ..      88     200 ..      73     212 .. 0.89
   2 !    7.1   0.0     0.001      0.39     482     534 ..     354     405 ..     323     456 .. 0.71

  Alignments for each domain:
  == domain 1    score: 23.3 bits;  conditional E-value: 1.3e-08
   TIGR00643 258 nRLlqGdVGsGKTvVavlallaviesGyqvalmaPTeiLAeQhyekl.relleplgievalLtgslkkkkkkelleeiasGeielvvGThallqekvefkeLalviiDEQhrFG 370
                 n L+    GsGKTv a+l l+++   G +++ +aP   L +  +++  ++++++lg++++ Ltg+++ ++++ ++++i + + e   G     q++   ++++lviiDE h  G
  MMETSP1137-20121227|4158_1  88 NVLVGAPTGSGKTVTAILRLVRAH-PGCKAVYIAPLKALVRERMQDWnAKFVKKLGLKMQELTGDVTPDSRALANATILATTPEKWDGVSRHWQQRAYVRKVSLVIIDEIHLLG 200
                 55666778**********999985.68************99998886268999********************************************************99888 PP

  == domain 2    score: 7.1 bits;  conditional E-value: 0.001
   TIGR00643 482 klnvallhgrlksdekeevleeFrekevdiLvaTtviEvGvdvPnatvmvied 534
                  + +++ h+ l++ ++  v + F e+++ +Lv+T  +  Gv+ P   ++v++ 
  MMETSP1137-20121227|4158_1 354 AFGIGIHHAGLEDSDRILVEKLFLEQSIMVLVCTATLAWGVNFPAH-LVVVKG 405
                 4568899999******9999************************65.555543 PP

>> TIGR01389  recQ: ATP-dependent DNA helicase RecQ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   2.4e-06   0.00088       6     139 ..      63     199 ..      60     251 .. 0.82
   2 !    9.1   0.0   0.00022     0.082     252     293 ..     358     399 ..     344     456 .. 0.83

  Alignments for each domain:
  == domain 1    score: 15.6 bits;  conditional E-value: 2.4e-06
   TIGR01389   6 kevFGyeeFRggqeeiieevl.dgrdvlavlPtGGGkslCYqvPaLllk..g.ltvvisPLisLmkDqvdqLraaGveaaalnstlsakeaqeilkalaagelklLYvaPerl..eqdkflellerlkiallavDeahCv 139
                 +++F +++F   q +i ++   ++ +vl+  PtG Gk +   +  L++   g  +v i+PL +L+++ +++ +a+ v+   l  +  + + +   +ala++   +L  +Pe+   ++++ +++    k++l+ +De h +
  MMETSP1137-20121227|4158_1  63 ESIFSFSHFNAVQTQIFHTAYqTDANVLVGAPTGSGKTVTA-ILRLVRAhpGcKAVYIAPLKALVRERMQDWNAKFVKKLGLKMQELTGDVTPDSRALANA--TILATTPEKWdgVSRHWQQRAYVRKVSLVIIDEIHLL 199
                 578**************9876157899***********975.556666422325799**************999999988887766666666556666555..6799****9855689999999999*********9965 PP

  == domain 2    score: 9.1 bits;  conditional E-value: 0.00022
   TIGR01389 252 laYhaGlskkvRaeaqekFleddvkvvvatvaFGmGidksdv 293
                 +++haGl+++ R    + Fle+   v+v t     G++ +  
  MMETSP1137-20121227|4158_1 358 GIHHAGLEDSDRILVEKLFLEQSIMVLVCTATLAWGVNFPAH 399
                 679*************************99999999997754 PP

>> TIGR01587  cas3_core: CRISPR-associated helicase Cas3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.6   0.1   3.1e-05     0.011       2     153 ..      89     216 ..      88     221 .. 0.59

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 3.1e-05
   TIGR01587   2 lvieAPtGyGKteaallwalklikkqkadkvifalPtratanamyerlkelfgselvlllk.sassrkikekgdseeleklvklysksnkkvflkpitvctidqvlksvlkevgeaeitlasianSvliiDEvhayeeytkalllallevlkd 153
                 +++ APtG+GKt +a+l +  +   +   k +++ P++a++ +  +  ++ f +  +l lk   ++      +ds +l++            ++   t++  d v   + +    a++     + S++iiDE+h++ e+   +l++++ ++++
  MMETSP1137-20121227|4158_1  89 VLVGAPTGSGKTVTAILRLVRA---HPGCKAVYIAPLKALVRERMQDWNAKFVK--KLGLKmQELT--GDVTPDSRALAN-----------ATILATTPEKWDGVSRHWQQ---RAYV----RKVSLVIIDEIHLLGEERGPILEVIVSRMRY 216
                 6899***********9988884...7788999999****998888888888885..3333301111..111222222221...........22222233334444333333...2222....2346777777777777777777777776665 PP

>> TIGR03158  cas3_cyano: CRISPR-associated helicase Cas3, subtype CYANO
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.0   0.0   0.00039      0.15       5      57 ..      78     131 ..      74     147 .. 0.72
   2 ?    1.0   0.0      0.11        39     142     159 ..     184     201 ..     154     233 .. 0.79
   3 ?   -1.1   0.0      0.47   1.8e+02     319     341 ..     381     403 ..     374     433 .. 0.77

  Alignments for each domain:
  == domain 1    score: 9.0 bits;  conditional E-value: 0.00039
   TIGR03158   5 vlealkekdadvllntAptGaGKtlaalvevlse..eldtialyPtNaLiedqek 57 
                 ++++  + da+vl   AptG+GKt +a++ +++   + +++ + P  aL+++  +
  MMETSP1137-20121227|4158_1  78 IFHTAYQTDANVL-VGAPTGSGKTVTAILRLVRAhpGCKAVYIAPLKALVRERMQ 131
                 5555555566655.57***********99887651156666666*****998765 PP

  == domain 2    score: 1.0 bits;  conditional E-value: 0.11
   TIGR03158 142 lytkfsvvifDEFHlyda 159
                 + +k+s+vi+DE Hl   
  MMETSP1137-20121227|4158_1 184 YVRKVSLVIIDEIHLLGE 201
                 3389**********9765 PP

  == domain 3    score: -1.1 bits;  conditional E-value: 0.47
   TIGR03158 319 fdillgtsavdvGvdFktdfliF 341
                 + +l+ t+++  Gv+F  + ++ 
  MMETSP1137-20121227|4158_1 381 IMVLVCTATLAWGVNFPAHLVVV 403
                 5689*************996654 PP

>> TIGR03491  TIGR03491: putative RecB family nuclease, TM0106 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.0   0.00021     0.077     213     299 ..     705     788 ..     697     797 .. 0.87

  Alignments for each domain:
  == domain 1    score: 9.7 bits;  conditional E-value: 0.00021
   TIGR03491 213 hLslvaGvtssraelLqelgietleeLaaadeeeleklkeqekevaeqlvlqAravlegkplllskpkalpelkkapvelifDiEsd 299
                 +L +++G+++     L + gi++l eL +a++++++k   +e++++++  ++ ++ l   plll + ++  ++  a++ +   iEs 
  MMETSP1137-20121227|4158_1 705 QLDDLPGMSEAAVSALGARGIKSLGELLRASPHAVKK--ALEHKLSARGLAELQSLLRSLPLLLMSAQEPLAA-GASGTVSISIEST 788
                 7999*********************************..99999999999999********998876665555.7999999999986 PP

>> TIGR04095  dnd_restrict_1: DNA phosphorothioation system restriction enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   0.0   0.00032      0.12      32     149 ..      94     203 ..      72     218 .. 0.73

  Alignments for each domain:
  == domain 1    score: 9.2 bits;  conditional E-value: 0.00032
   TIGR04095  32 atGtGktltaLalvsklaekikslvvvvvvPykhLveqWakeaekFglepilayesvsrWqkelsekleelsskakkllliittnatlkeek.FqsqlrllkkkllliaDeahnlGakr 149
                  tG+Gkt+ta+   ++ +        v ++P k Lv+  ++    ++ + ++  + +   ++el   ++  s    + +++ tt +   + +   +q  +++k  l+i De+h lG +r
  MMETSP1137-20121227|4158_1  94 PTGSGKTVTAILRLVRAHPG---CKAVYIAPLKALVRERMQ---DWNAKFVKKLGLK---MQELTGDVTPDSRALANATILATTPEKWDGVSrHWQQRAYVRKVSLVIIDEIHLLGEER 203
                 6*********8776666554...5667899******97655...5566666555543...56788888876666677777777777776655244445577888999999999999775 PP

>> TIGR00595  priA: primosomal protein N'
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   0.0   0.00037      0.14     311     385 ..     376     450 ..     364     471 .. 0.81

  Alignments for each domain:
  == domain 1    score: 8.5 bits;  conditional E-value: 0.00037
   TIGR00595 311 faagkidiliGtqmiaKGldfpkvtlvgvlsaDsglklpdfRaaErtfqlltqvaGRagRae..kpgevliqtvnPe 385
                 f ++ i +l+ t  +a G++fp+   ++v+++         R  +  ++ + q++GRagR +  + g   i  ++P+
  MMETSP1137-20121227|4158_1 376 FLEQSIMVLVCTATLAWGVNFPA--HLVVVKGTEYYDAKTKRYVDFPVTDVLQMMGRAGRPQfdDRGVASILVHEPK 450
                 67899*****************7..4667889999999999*******************76113444445555565 PP

>> TIGR02785  addA_Gpos: helicase-exonuclease AddAB, AddA subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   0.0   0.00049      0.18       9      37 ..      81     109 ..      73     111 .. 0.86

  Alignments for each domain:
  == domain 1    score: 7.3 bits;  conditional E-value: 0.00049
   TIGR02785   9 aivakgqdiLVsAsAGSGKTaVLveRiik 37 
                 + ++++ ++LV A  GSGKT+  + R+++
  MMETSP1137-20121227|4158_1  81 TAYQTDANVLVGAPTGSGKTVTAILRLVR 109
                 56899***************998888775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (877 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        96  (0.0234032); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                        29  (0.00706972); expected 4.1 (0.001)
Passed Fwd filter:                        11  (0.00268162); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.81u 0.14s 00:00:00.95 Elapsed: 00:00:00.66
# Mc/sec: 1753.86
//
Query:       MMETSP1137-20121227|4161_1  [L=160]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (160 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       102  (0.0248659); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.16s 00:00:00.33 Elapsed: 00:00:00.45
# Mc/sec: 469.29
//
Query:       MMETSP1137-20121227|4162_1  [L=270]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.3e-14   49.6   3.0    7.2e-12   42.5   0.5    2.2  2  TIGR00990 3a0801s09: mitochondrial precursor proteins import receptor
    2.3e-10   38.2   1.5      1e-09   36.1   0.1    2.1  2  TIGR02552 LcrH_SycD: type III secretion low calcium response chaperone LcrH/SycD
      2e-08   31.9   0.5    6.6e-08   30.2   0.0    2.0  2  TIGR02521 type_IV_pilW: type IV pilus biogenesis/stability protein PilW
    4.3e-08   29.3   3.1    4.3e-08   29.3   2.1    1.8  2  TIGR02917 PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein
    0.00084   17.8   0.4       0.17   10.3   0.0    2.9  2  TIGR02795 tol_pal_ybgF: tol-pal system protein YbgF
      0.004   15.9   0.7        1.8    7.4   0.0    2.3  2  TIGR01870 cas_TM1810_Csm2: CRISPR type III-A/MTUBE-associated protein Csm2


Domain annotation for each model (and alignments):
>> TIGR00990  3a0801s09: mitochondrial precursor proteins import receptor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.3   0.0   0.00048      0.33     125     151 ..      14      40 ..       4      46 .. 0.85
   2 !   42.5   0.5   1.1e-14   7.2e-12     160     251 ..      80     170 ..      73     230 .. 0.81

  Alignments for each domain:
  == domain 1    score: 7.3 bits;  conditional E-value: 0.00048
   TIGR00990 125 kyaaklkekGnkayrnkdfdkaielys 151
                 + a++lke+Gn+ +++ ++ +a+  y 
  MMETSP1137-20121227|4162_1  14 AKALQLKEAGNEHFKKGNYRDAMVAYH 40 
                 5699******************98875 PP

  == domain 2    score: 42.5 bits;  conditional E-value: 1.1e-14
   TIGR00990 160 Pvyysnraacynaladlekvvedttaaleldpdyvkalnrranaydqlgkyadalldltassliddfrdeqsaqaverllkkfaeskakeil 251
                  v++sn+a c+  l+++ek  ++ t+al +dp+ vk l rr + y qlg   +a  dlt +   ++  + ++ + ++ l  + a  k ke+ 
  MMETSP1137-20121227|4162_1  80 VVHHSNLAMCHLKLGNMEKARDNCTKALMIDPNNVKCLFRRGKCYSQLGALDEAKADLTQVL-AQQPDNRDAIREMQTLRSRLASHKKKEQK 170
                 4899******************************************************9653.33333444444455666677777777753 PP

>> TIGR02552  LcrH_SycD: type III secretion low calcium response chaperone LcrH/SycD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.1      0.12        82      25      42 ..      23      40 ..      14      46 .. 0.74
   2 !   36.1   0.1   1.5e-12     1e-09      56     120 ..      84     148 ..      75     166 .. 0.89

  Alignments for each domain:
  == domain 1    score: 0.8 bits;  conditional E-value: 0.12
   TIGR02552 25 AYnlyqqgkyeeAeklFq 42
                + +++++g+y++A  +++
  MMETSP1137-20121227|4162_1 23 GNEHFKKGNYRDAMVAYH 40
                567888999999887765 PP

  == domain 2    score: 36.1 bits;  conditional E-value: 1.5e-12
   TIGR02552  56 lgLaaclqalkeyeeAiaaYalaaaldlddprpvyhaaecllalgekeeAlkaLklaieiaeeke 120
                   La+c+ +l+++e+A+++ + a+++d+++ + ++++++c+ +lg   eA+++L  +++ + +++
  MMETSP1137-20121227|4162_1  84 SNLAMCHLKLGNMEKARDNCTKALMIDPNNVKCLFRRGKCYSQLGALDEAKADLTQVLAQQPDNR 148
                 579********************************************************999886 PP

>> TIGR02521  type_IV_pilW: type IV pilus biogenesis/stability protein PilW
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0      0.58     4e+02     170     192 ..      17      39 ..       8      47 .. 0.69
   2 !   30.2   0.0   9.6e-11   6.6e-08      28     101 ..      77     150 ..      60     153 .. 0.85

  Alignments for each domain:
  == domain 1    score: -1.8 bits;  conditional E-value: 0.58
   TIGR02521 170 esllelaelklkkgqyaeArall 192
                  +l+e  + ++kkg+y +A+ ++
  MMETSP1137-20121227|4162_1  17 LQLKEAGNEHFKKGNYRDAMVAY 39 
                 45555566677888888887666 PP

  == domain 2    score: 30.2 bits;  conditional E-value: 9.6e-11
   TIGR02521  28 ekaakirvqLaleYleqgdlekAkenlekAleldpkdadanlalAlyyqqlgelekAeesfrkAltlkpnngdv 101
                 e  +  + +La+  l+ g++ekA++n  kAl +dp++ +    ++  y qlg l++A++   + l+++p+n d+
  MMETSP1137-20121227|4162_1  77 ELKVVHHSNLAMCHLKLGNMEKARDNCTKALMIDPNNVKCLFRRGKCYSQLGALDEAKADLTQVLAQQPDNRDA 150
                 333556789*************************************************************9886 PP

>> TIGR02917  PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.0   0.1     0.046        31     699     730 ..      12      43 ..       9      46 .. 0.88
   2 !   29.3   2.1   6.3e-11   4.3e-08     468     551 ..      83     166 ..      69     216 .. 0.77

  Alignments for each domain:
  == domain 1    score: -0.0 bits;  conditional E-value: 0.046
   TIGR02917 699 kpkaalgfeleGdlalrqkdykaAiqaykkal 730
                 ++ +al  +  G+ ++++ +y +A+ ay++ +
  MMETSP1137-20121227|4162_1  12 HIAKALQLKEAGNEHFKKGNYRDAMVAYHEIY 43 
                 7778888999999***************9987 PP

  == domain 2    score: 29.3 bits;  conditional E-value: 6.3e-11
   TIGR02917 468 ynllgaiylgkkdlakAreafekALkiepdffpAlanLArldlqekniddAkqrfekvlaidpknlkallaLaelaarkgneee 551
                 +  l+  +l+ ++ +kAr +  kAL i+p++++ l+   +   q + +d+Ak+ + +vla +p n +a++++  l  r +++++
  MMETSP1137-20121227|4162_1  83 HSNLAMCHLKLGNMEKARDNCTKALMIDPNNVKCLFRRGKCYSQLGALDEAKADLTQVLAQQPDNRDAIREMQTLRSRLASHKK 166
                 667888899999999999999999999999999999999999999999999999999999999999999998888776633222 PP

>> TIGR02795  tol_pal_ybgF: tol-pal system protein YbgF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.0     0.018        12       5      26 ..      19      40 ..      15      49 .. 0.82
   2 !   10.3   0.0   0.00025      0.17      76     113 ..     114     151 ..      86     157 .. 0.80

  Alignments for each domain:
  == domain 1    score: 4.3 bits;  conditional E-value: 0.018
   TIGR02795  5 eykaallvlkegdYakAeqaFk 26
                 ++a+++++k+g+Y++A  a++
  MMETSP1137-20121227|4162_1 19 LKEAGNEHFKKGNYRDAMVAYH 40
                5788899999999999988765 PP

  == domain 2    score: 10.3 bits;  conditional E-value: 0.00025
   TIGR02795  76 pdallklgeslqelgqkekAkktlqevikrYPkssaak 113
                  ++l++ g+++++lg  ++Ak+ l++v ++ P++  a 
  MMETSP1137-20121227|4162_1 114 VKCLFRRGKCYSQLGALDEAKADLTQVLAQQPDNRDAI 151
                 468999**************************998775 PP

>> TIGR01870  cas_TM1810_Csm2: CRISPR type III-A/MTUBE-associated protein Csm2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.9   0.1    0.0039       2.7      56      94 ..       7      43 ..       2      44 .. 0.68
   2 !    7.4   0.0    0.0026       1.8      22      61 ..     142     178 ..     122     189 .. 0.73

  Alignments for each domain:
  == domain 1    score: 6.9 bits;  conditional E-value: 0.0039
   TIGR01870 56 velleelldkidkiddde.rrafekfvkfleAivAYhkfl 94
                +e+ + + ++++ +  +  +++f+k  ++ +A+vAYh ++
  MMETSP1137-20121227|4162_1  7 SEVSRHIAKALQLK--EAgNEHFKK-GNYRDAMVAYHEIY 43
                55555566666555..333577776.58*********987 PP

  == domain 2    score: 7.4 bits;  conditional E-value: 0.0026
   TIGR01870  22 rsekkneeivaelellkvklaYavgregrefeelvellee 61 
                  ++ +n+++++e++ l+ +la  +++e+++f ++ e   +
  MMETSP1137-20121227|4162_1 142 AQQPDNRDAIREMQTLRSRLASHKKKEQKKFAGFFE---K 178
                 337899***************999988666665544...3 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (270 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       158  (0.0385178); expected 82.0 (0.02)
Passed bias filter:                      105  (0.0255973); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.28u 0.18s 00:00:00.46 Elapsed: 00:00:00.62
# Mc/sec: 574.79
//
Query:       MMETSP1137-20121227|4163_1  [L=644]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.4e-42  142.7  18.2    1.3e-17   61.5   0.1    3.1  3  TIGR00990 3a0801s09: mitochondrial precursor proteins import receptor
    3.3e-15   52.9  24.4    6.1e-08   28.8   0.6    4.7  3  TIGR02917 PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein
    2.3e-12   44.8  12.8    0.00068   17.1   0.3    5.4  5  TIGR02521 type_IV_pilW: type IV pilus biogenesis/stability protein PilW
    1.8e-10   38.5  15.8     0.0058   14.2   0.0    5.1  5  TIGR02552 LcrH_SycD: type III secretion low calcium response chaperone LcrH/SycD
    0.00028   19.3  19.4        1.5    7.3   0.0    6.2  6  TIGR02795 tol_pal_ybgF: tol-pal system protein YbgF
  ------ inclusion threshold ------
      0.017   11.1  10.9     0.0014   14.7   1.2    2.6  3  TIGR03939 PGA_TPR_OMP: poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA


Domain annotation for each model (and alignments):
>> TIGR00990  3a0801s09: mitochondrial precursor proteins import receptor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.5   0.1     2e-20   1.3e-17     128     214 ..       3      89 ..       1      94 [. 0.97
   2 !   42.9   5.1     8e-15   5.5e-12     115     246 ..     218     357 ..     204     369 .. 0.75
   3 !   44.8   0.3   2.2e-15   1.5e-12     131     240 ..     374     483 ..     362     504 .. 0.84

  Alignments for each domain:
  == domain 1    score: 61.5 bits;  conditional E-value: 2e-20
   TIGR00990 128 aklkekGnkayrnkdfdkaielyskalllkedPvyysnraacynaladlekvvedttaaleldpdyvkalnrranaydqlgkyadal 214
                  + ke+Gn a++  d+  ai+ +s a+++ +  v ysnr+ac+ +l d+e  + d+ + ++ +pd+ k   r+ +a  +lgk+ +a+
  MMETSP1137-20121227|4163_1   3 DAEKELGNAAFKTGDYPTAIKHFSNAIEIAPTHVLYSNRSACHCSLRDYEAALSDAEKCIAAKPDWGKGYGRKGAALHGLGKFEEAV 89 
                 5679*********************************************************************************96 PP

  == domain 2    score: 42.9 bits;  conditional E-value: 8e-15
   TIGR00990 115 vvnlseeer.....kkyaaklkekGnkayrnkdfdkaielyskalllkedPv.yysnraacynaladlekvvedttaalel....dpdy...vkalnrranaydqlgkyadalldltassliddfrdeqsaqaverllkk.faesk 246
                 vv+l+ e++     k+ a k ke+Gn ay+ k+f++ai+ y+ a+++ +d + yy n+aa    ++dl+  +e   + +el      dy    ka  r  nay++ gk a+ +      +  d + +e+s++ v++llk+ +ae+k
  MMETSP1137-20121227|4163_1 218 VVELTPEQKerkakKDEADKHKEAGNTAYKAKKFEEAIKHYEAAMEVLPDEMtYYNNMAAVKMEMGDLDGCIETCKKGIELgravRADYklvAKAYARIGNAYKKQGKLAEXIR-----AYEDSLMEERSEE-VQKLLKRtQAEKK 357
                 556665554111115667899**************************99975499**********************99983333467844459999999*******9999764.....4555566666554.4555554144443 PP

  == domain 3    score: 44.8 bits;  conditional E-value: 2.2e-15
   TIGR00990 131 kekGnkayrnkdfdkaielyskalllkedP.vyysnraacynaladlekvvedttaaleldpdyvkalnrranaydqlgkyadalldltassliddfrdeqsaqaverllk 240
                 +++Gn+ +++ +f +ai  y+ a+   +   + ysnraacy+ l +++  ++d+ + +e++p +vk   r+a+ +  l  y +a+       l  d  +++++q  e  l+
  MMETSP1137-20121227|4163_1 374 RQEGNELFKQGKFAEAIPKYEEAMRRDPRAhLPYSNRAACYQKLMEWQLALKDADKCVEMEPTFVKGWSRKASIHTFLKEYHKAIEAYNQI-LKIDPDNAEAKQQAEHVLN 483
                 679********************9877654367**************************************************98666544.4445566666666677666 PP

>> TIGR02917  PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.1   5.7e-08   3.9e-05     397     499 ..       2     103 ..       1     120 [. 0.86
   2 !    7.2   1.3   0.00031      0.21     583     652 ..     292     362 ..     290     376 .. 0.88
   3 !   28.8   0.6   8.9e-11   6.1e-08     135     231 ..     380     476 ..     366     507 .. 0.72

  Alignments for each domain:
  == domain 1    score: 19.5 bits;  conditional E-value: 5.7e-08
   TIGR02917 397 aaaktklgiskLaqGdkseaiadLetAvkldpell.raellLilsyLrsgefdkalaaakklekkqpdnaslynllgaiylgkkdlakAreafekALkiepdff 499
                 a+a+ +lg     +Gd   ai+++ +A++++p  +  ++++    +   ++ + al+ a+k ++ +pd  + y  +ga++ g ++ ++A +a+e  Lk+ep+ +
  MMETSP1137-20121227|4163_1   2 ADAEKELGNAAFKTGDYPTAIKHFSNAIEIAPTHVlYSNRSAC--HCSLRDYEAALSDAEKCIAAKPDWGKGYGRKGAALHGLGKFEEAVKAYEDGLKVEPNLA 103
                 778889999999*******************876514555544..456667889***********************************************865 PP

  == domain 2    score: 7.2 bits;  conditional E-value: 0.00031
   TIGR02917 583 lkkalaileeaadlapdspellellgraqlaakdlkkavesfkk.llelqpdsalalllladvyavaknka 652
                  kk++++ + + + ++  +++++ +g+a++++++l++ ++++++ l+e+ +++ + ll+ +++ + +++++
  MMETSP1137-20121227|4163_1 292 CKKGIELGRAVRADYKLVAKAYARIGNAYKKQGKLAEXIRAYEDsLMEERSEEVQKLLKRTQAEKKKQDEE 362
                 58999999999999****************************8648999*************996666554 PP

  == domain 3    score: 28.8 bits;  conditional E-value: 8.9e-11
   TIGR02917 135 aLglgeleeAqksleqAlaiapksleaklglAqlalaenkldearalvdevLtadpknvdAllLkgdlllssgnieeAlaayrkaielkpnaiaall 231
                  +++g+++eA  ++e+A   +p++       A    +  + + a + +d+ ++ +p +v+ ++ k+++   ++++ +A +ay+++++++p++++a+ 
  MMETSP1137-20121227|4163_1 380 LFKQGKFAEAIPKYEEAMRRDPRAHLPYSNRAACYQKLMEWQLALKDADKCVEMEPTFVKGWSRKASIHTFLKEYHKAIEAYNQILKIDPDNAEAKQ 476
                 5677888888888888888888876555555555555556666888888888888888888888888888888888888888888888887766543 PP

>> TIGR02521  type_IV_pilW: type IV pilus biogenesis/stability protein PilW
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.0     0.012       8.3      31      64 ..       2      35 ..       1      44 [. 0.83
   2 !    8.9   0.0    0.0003      0.21      46     103 ..      50     107 ..      46     108 .. 0.95
   3 !    9.8   4.5   0.00017      0.12      61     184 ..     231     358 ..     226     369 .. 0.81
   4 !   17.1   0.3     1e-06   0.00068      28      93 ..     368     432 ..     351     435 .. 0.78
   5 !    8.1   0.0   0.00055      0.38      48     101 ..     421     474 ..     419     476 .. 0.95

  Alignments for each domain:
  == domain 1    score: 3.7 bits;  conditional E-value: 0.012
   TIGR02521 31 akirvqLaleYleqgdlekAkenlekAleldpkd 64
                a++  +L+ + ++ gd+ +A +   +A+e++p  
  MMETSP1137-20121227|4163_1  2 ADAEKELGNAAFKTGDYPTAIKHFSNAIEIAPTH 35
                6667789999999999999999999999999875 PP

  == domain 2    score: 8.9 bits;  conditional E-value: 0.0003
   TIGR02521  46 dlekAkenlekAleldpkdadanlalAlyyqqlgelekAeesfrkAltlkpnngdvlN 103
                 d+e+A  + ek ++++p+  + +   + ++  lg+ e+A ++++++l+++pn + + N
  MMETSP1137-20121227|4163_1  50 DYEAALSDAEKCIAAKPDWGKGYGRKGAALHGLGKFEEAVKAYEDGLKVEPNLAMLTN 107
                 899************************************************9887777 PP

  == domain 3    score: 9.8 bits;  conditional E-value: 0.00017
   TIGR02521  61 dpkdadanlalAlyyqqlgelekAeesfrkAltlkpnngdvlNNYGtFLcqqkkyeeAeqqfeaAie.....dpkYeqparsyeNaglcalkagdtekaekyltralkidpkrpesllelaelklkkgq 184
                 ++++ad ++  +    + ++ e+A ++++ A+++ p++ + +NN  +   ++++ +  ++  ++ ie       +Y+  a++y  +g  ++k+g+ ++   + + +l  ++++ ++ l l++++ +k++
  MMETSP1137-20121227|4163_1 231 KKDEADKHKEAGNTAYKAKKFEEAIKHYEAAMEVLPDEMTYYNNMAAVKMEMGDLDGCIETCKKGIElgravRADYKLVAKAYARIGNAYKKQGKLAEXIRAYEDSLMEERSEEVQKL-LKRTQAEKKK 358
                 566677777777788889999********************************9999999888887733332467***********************99999999988887776666.6666665543 PP

  == domain 4    score: 17.1 bits;  conditional E-value: 1e-06
   TIGR02521  28 ekaakirvqLaleYleqgdlekAkenlekAleldpkdadanlalAlyyqqlgelekAeesfrkAlt 93 
                 ek  +   q + e ++qg++++A  + e+A+  dp    +++ +A  yq+l+e + A +   k ++
  MMETSP1137-20121227|4163_1 368 EK-CEEARQEGNELFKQGKFAEAIPKYEEAMRRDPRAHLPYSNRAACYQKLMEWQLALKDADKCVE 432
                 33.34444789999***************************************9999776555555 PP

  == domain 5    score: 8.1 bits;  conditional E-value: 0.00055
   TIGR02521  48 ekAkenlekAleldpkdadanlalAlyyqqlgelekAeesfrkAltlkpnngdv 101
                 + A ++ +k +e++p   + ++  A +   l+e +kA e++++ l+++p+n+++
  MMETSP1137-20121227|4163_1 421 QLALKDADKCVEMEPTFVKGWSRKASIHTFLKEYHKAIEAYNQILKIDPDNAEA 474
                 6799***********************************************986 PP

>> TIGR02552  LcrH_SycD: type III secretion low calcium response chaperone LcrH/SycD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.4   0.1    0.0011      0.75      58     115 ..       8      64 ..       2      72 .. 0.82
   2 ?   -0.0   0.0      0.21   1.4e+02      59      83 ..      76     100 ..      71     104 .. 0.85
   3 !    9.3   0.6   0.00027      0.18      60     129 ..     243     312 ..     233     319 .. 0.86
   4 !   14.1   0.2   9.3e-06    0.0063      64     116 ..     382     434 ..     377     439 .. 0.93
   5 !   14.2   0.0   8.5e-06    0.0058      55     101 ..     441     487 ..     433     494 .. 0.80

  Alignments for each domain:
  == domain 1    score: 7.4 bits;  conditional E-value: 0.0011
   TIGR02552  58 LaaclqalkeyeeAiaaYalaaaldlddprpvyhaaecllalgekeeAlkaLklaiei 115
                 L+ +  ++++y +Ai+ ++ a  + +  ++ +  ++ c+  l ++e Al++ + +i+ 
  MMETSP1137-20121227|4163_1   8 LGNAAFKTGDYPTAIKHFSNAIEIAPT-HVLYSNRSACHCSLRDYEAALSDAEKCIAA 64 
                 888889999999999999999999885.577888889999999999998887777765 PP

  == domain 2    score: -0.0 bits;  conditional E-value: 0.21
   TIGR02552  59 aaclqalkeyeeAiaaYalaaaldl 83 
                 +a+l+ l+++eeA++aY+  +++++
  MMETSP1137-20121227|4163_1  76 GAALHGLGKFEEAVKAYEDGLKVEP 100
                 7899999**********98777665 PP

  == domain 3    score: 9.3 bits;  conditional E-value: 0.00027
   TIGR02552  60 aclqalkeyeeAiaaYalaaaldlddprpvyhaaecllalgekeeAlkaLklaieiaeekeeyselkera 129
                  +  ++k++eeAi+ Y++a+ + +d+   +   a +++++g+     ++ k  ie+ ++ ++  +l  +a
  MMETSP1137-20121227|4163_1 243 NTAYKAKKFEEAIKHYEAAMEVLPDEMTYYNNMAAVKMEMGDLDGCIETCKKGIELGRAVRADYKLVAKA 312
                 56678999*********************************99999999999999888888777777666 PP

  == domain 4    score: 14.1 bits;  conditional E-value: 9.3e-06
   TIGR02552  64 alkeyeeAiaaYalaaaldlddprpvyhaaecllalgekeeAlkaLklaieia 116
                 ++++++eAi  Y+ a+  d+ ++ p+  +a c+ +l e + Alk+ + ++e+ 
  MMETSP1137-20121227|4163_1 382 KQGKFAEAIPKYEEAMRRDPRAHLPYSNRAACYQKLMEWQLALKDADKCVEME 434
                 67899****************************************99999986 PP

  == domain 5    score: 14.2 bits;  conditional E-value: 8.5e-06
   TIGR02552  55 wlgLaaclqalkeyeeAiaaYalaaaldlddprpvyhaaecllalge 101
                 w + a+ +  lkey +Ai+aY  ++++d+d++++  +a  +l +++ 
  MMETSP1137-20121227|4163_1 441 WSRKASIHTFLKEYHKAIEAYNQILKIDPDNAEAKQQAEHVLNLINS 487
                 555688999***********************998887777666665 PP

>> TIGR02795  tol_pal_ybgF: tol-pal system protein YbgF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.3   0.0    0.0021       1.5      40      71 ..       3      34 ..       1      61 [. 0.73
   2 ?    0.5   0.0      0.27   1.9e+02      46      71 ..      76     101 ..      69     117 .. 0.78
   3 !    6.9   0.1    0.0029         2      45      73 ..     241     269 ..     231     294 .. 0.79
   4 ?    3.7   1.1     0.028        19      36      92 ..     307     361 ..     304     366 .. 0.78
   5 !    5.3   0.1    0.0088         6       6      33 ..     374     401 ..     369     429 .. 0.72
   6 ?    3.6   0.2     0.031        21      52      85 ..     451     487 ..     444     505 .. 0.60

  Alignments for each domain:
  == domain 1    score: 7.3 bits;  conditional E-value: 0.0021
   TIGR02795 40 nAqYwlGealyakkkykdAakaflevvkkypk 71
                +A+  lG+a +++++y  A+k+f+++++  p+
  MMETSP1137-20121227|4163_1  3 DAEKELGNAAFKTGDYPTAIKHFSNAIEIAPT 34
                45555677777777777777777776665554 PP

  == domain 2    score: 0.5 bits;  conditional E-value: 0.27
   TIGR02795  46 GealyakkkykdAakaflevvkkypk 71 
                 G al   +k+++A ka+++ +k  p+
  MMETSP1137-20121227|4163_1  76 GAALHGLGKFEEAVKAYEDGLKVEPN 101
                 66777788888888888888776665 PP

  == domain 3    score: 6.9 bits;  conditional E-value: 0.0029
   TIGR02795  45 lGealyakkkykdAakaflevvkkypkse 73 
                  G++ y++kk+++A+k+++++++  p++ 
  MMETSP1137-20121227|4163_1 241 AGNTAYKAKKFEEAIKHYEAAMEVLPDEM 269
                 58999999999999999999988777665 PP

  == domain 4    score: 3.7 bits;  conditional E-value: 0.028
   TIGR02795  36 tlapnAqYwlGealyakkkykdAakaflevvkkypksekapdallklgeslqelgqk 92 
                 +l++ A+  +G+a+ +++k+++ ++a+++ +   ++ +   + llk  ++ ++ +++
  MMETSP1137-20121227|4163_1 307 KLVAKAYARIGNAYKKQGKLAEXIRAYEDSLM--EERSEEVQKLLKRTQAEKKKQDE 361
                 5678888889*******************998..45555667888887776665554 PP

  == domain 5    score: 5.3 bits;  conditional E-value: 0.0088
   TIGR02795   6 ykaallvlkegdYakAeqaFkaFlkkYP 33 
                  +++++++k+g++a+A+ ++++ +++ P
  MMETSP1137-20121227|4163_1 374 RQEGNELFKQGKFAEAIPKYEEAMRRDP 401
                 5666666777777777666665555444 PP

  == domain 6    score: 3.6 bits;  conditional E-value: 0.031
   TIGR02795  52 kkkykdAakaflevvkkypkseka...pdallklges 85 
                  k+y++A++a+++++k +p+++ a   ++  l+l +s
  MMETSP1137-20121227|4163_1 451 LKEYHKAIEAYNQILKIDPDNAEAkqqAEHVLNLINS 487
                 5788899999999998888765541114544444333 PP

>> TIGR03939  PGA_TPR_OMP: poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0      0.37   2.6e+02      99     135 ..      82     118 ..      76     120 .. 0.82
   2 ?    1.2   0.9     0.024        17      97     173 ..     246     322 ..     229     375 .. 0.71
   3 ?   14.7   1.2   2.1e-06    0.0014      99     224 ..     383     510 ..     381     560 .. 0.80

  Alignments for each domain:
  == domain 1    score: -2.7 bits;  conditional E-value: 0.37
   TIGR03939  99 ekqwdkAlelyrkllqrdPknpdlllGlaltladagk 135
                 ++++++A++ y++ l+ +P+ + l  Gl  ++ +a++
  MMETSP1137-20121227|4163_1  82 LGKFEEAVKAYEDGLKVEPNLAMLTNGLQDAKREAER 118
                 67899**************999999998877777665 PP

  == domain 2    score: 1.2 bits;  conditional E-value: 0.024
   TIGR03939  97 RnekqwdkAlelyrkllqrdPknpdlllGlaltladagkdeeAlkalkelkerfpsdaerlealaYvlraaedslda 173
                  ++k++++A++ y+ + +  P ++++   +a ++ ++g+ +   ++ k+  e  ++ ++ ++  a ++++ ++++++
  MMETSP1137-20121227|4163_1 246 YKAKKFEEAIKHYEAAMEVLPDEMTYYNNMAAVKMEMGDLDGCIETCKKGIELGRAVRADYKLVAKAYARIGNAYKK 322
                 5689999***********************99999999998888877777666665555554444444444444444 PP

  == domain 3    score: 14.7 bits;  conditional E-value: 2.1e-06
   TIGR03939  99 ekqwdkAlelyrkllqrdPknpdlllGlaltladagkdeeAlkalkelkerfpsdaerlealaYvlraaedsldalaaiqqalrlePdnkellkelveiltrlgapalaa..rlakqhpelftdeekr 224
                 ++++++A+  y+++ +rdP+     +  a       + + Alk +++ +e +p+ ++  + +a + + ++++ +a++a++q+l+ +Pdn e+ ++   +l+ ++++   +  ++++q++++ ++e ++
  MMETSP1137-20121227|4163_1 383 QGKFAEAIPKYEEAMRRDPRAHLPYSNRAACYQKLMEWQLALKDADKCVEMEPTFVKGWSRKASIHTFLKEYHKAIEAYNQILKIDPDNAEAKQQAEHVLNLINSANSSGevDAERQARAMADPEIQA 510
                 6899*****************99999999999999**********************99*************************************99999666655443114455555555555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (644 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       284  (0.0692345); expected 82.0 (0.02)
Passed bias filter:                      109  (0.0265724); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.66u 0.17s 00:00:00.83 Elapsed: 00:00:00.65
# Mc/sec: 1307.71
//
Query:       MMETSP1137-20121227|4164_1  [L=594]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (594 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        64  (0.0156021); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.14s 00:00:00.51 Elapsed: 00:00:00.51
# Mc/sec: 1537.28
//
Query:       MMETSP1137-20121227|4165_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        37  (0.00901999); expected 82.0 (0.02)
Passed bias filter:                       36  (0.00877621); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.16s 00:00:00.26 Elapsed: 00:00:00.27
# Mc/sec: 249.31
//
Query:       MMETSP1137-20121227|4166_1  [L=382]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      1e-20   71.6   0.0      2e-20   70.7   0.0    1.5  1  TIGR01557 myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class


Domain annotation for each model (and alignments):
>> TIGR01557  myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.7   0.0   4.8e-24     2e-20       1      55 [.     108     161 ..     108     163 .. 0.97

  Alignments for each domain:
  == domain 1    score: 70.7 bits;  conditional E-value: 4.8e-24
   TIGR01557   1 kkrvvWteelhrrFlqAvqklGgedkatPkkIlelmkveklTreqvkSHlQkyrl 55 
                 k+r vWt++lh rF  A ++lG  d a Pk+Il+lm+ve+lT+ ++kSHlQkyr 
  MMETSP1137-20121227|4166_1 108 KRRFVWTPDLHARFEAACNQLGL-DNAKPKSILRLMNVEGLTKANIKSHLQKYRC 161
                 89*********************.*****************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (382 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       180  (0.043881); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.29u 0.15s 00:00:00.43 Elapsed: 00:00:00.44
# Mc/sec: 1145.91
//
Query:       MMETSP1137-20121227|4168_1  [L=494]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      7e-38  128.3   0.0    1.7e-37  127.1   0.0    1.6  1  TIGR03540 DapC_direct: LL-diaminopimelate aminotransferase
    3.8e-35  119.4   0.0    6.6e-35  118.7   0.0    1.3  1  TIGR01265 tyr_nico_aTase: tyrosine/nicotianamine aminotransferases
    6.9e-32  108.5   0.1    4.4e-31  105.9   0.1    1.9  1  TIGR03947 viomycin_VioD: capreomycidine synthase
    2.6e-31  106.6   0.0    4.6e-31  105.9   0.0    1.3  1  TIGR01264 tyr_amTase_E: tyrosine aminotransferase
    2.4e-28   96.8   0.0    3.4e-28   96.4   0.0    1.1  1  TIGR01141 hisC: histidinol-phosphate transaminase
      2e-24   84.0   0.0    4.5e-24   82.8   0.0    1.6  1  TIGR03538 DapC_gpp: succinyldiaminopimelate transaminase
    9.8e-24   81.9   0.0    2.9e-23   80.4   0.0    1.6  1  TIGR01140 L_thr_O3P_dcar: threonine-phosphate decarboxylase
    5.9e-23   79.2   0.0      9e-23   78.6   0.0    1.2  1  TIGR03537 DapC: succinyldiaminopimelate transaminase
    2.7e-18   64.0   0.0    6.4e-17   59.5   0.0    2.6  1  TIGR03539 DapC_actino: succinyldiaminopimelate transaminase
    1.2e-15   54.8   0.0    1.7e-15   54.2   0.0    1.1  1  TIGR03801 asp_4_decarbox: aspartate 4-decarboxylase
    1.1e-08   32.2   0.0    4.1e-08   30.4   0.0    1.9  1  TIGR03542 DAPAT_plant: LL-diaminopimelate aminotransferase
    4.3e-05   20.2   0.0    6.7e-05   19.6   0.0    1.2  1  TIGR02080 O_succ_thio_ly: O-succinylhomoserine (thiol)-lyase
     0.0001   18.9   0.0    0.00015   18.4   0.0    1.2  1  TIGR01329 cysta_beta_ly_E: cystathionine beta-lyase
    0.00045   16.8   0.0    0.00069   16.1   0.0    1.3  1  TIGR01325 O_suc_HS_sulf: O-succinylhomoserine sulfhydrylase
    0.00074   16.1   0.0     0.0018   14.9   0.0    1.6  2  TIGR01326 OAH_OAS_sulfhy: O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase
     0.0059   13.7   0.0      0.029   11.5   0.0    1.8  2  TIGR01976 am_tr_V_VC1184: cysteine desulfurase family protein
  ------ inclusion threshold ------
      0.014   12.1   0.0      0.026   11.2   0.0    1.3  1  TIGR01328 met_gam_lyase: methionine gamma-lyase


Domain annotation for each model (and alignments):
>> TIGR03540  DapC_direct: LL-diaminopimelate aminotransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  127.1   0.0   7.1e-40   1.7e-37      32     381 ..     107     488 ..      99     490 .. 0.82

  Alignments for each domain:
  == domain 1    score: 127.1 bits;  conditional E-value: 7.1e-40
   TIGR03540  32 idlgiGdPdlptpkeivealkkaaekpenhryPsyeGllayrkavadwykkrfgveldpetevlsliGskeGiahlplafvnpGdivlvpdPgyPvykistllaggepyelPlkeen...dflPdldaipedvlkkakilflnyPnnPtsavadkeffkevvefakey.niivvhdaayseivfdeykalsflevdgakdvaielhslsktynmtGWrigfavGnkeliaalgkvksnvdsGvfqaiqeaaiaal.......eeeeevvkelrkvykkrrdllvealkkiGldvkkpkatfylWv.....kvPeGyt........sa....efakklleeagvvvtpGvgfGesGe.....Gyirisltvseerlkeaverlk 381
                 ++lg G Pd   p+ +v+++++a+++   h+y   +G  a+ + +a+ y ++ g e++p +ev   +G+ + +     a+vnpGd vl+ +P++  y    +lag+++  + lk ++   ++  d da+++ v+ ++k+l ln P nPt+ v +k  ++ v ++ +   +++v++d+ y  iv+ + + + f  +++  d ++ l+s  kt+++tGW+ g+ vG + li+ ++ +   v   + +++q+a    l       e++++  + l+++y+++r ll +al + G++  + ++ f+l +     +vP+ y         s+     +++ l  eagv++ p   f ++ +       +r++  +s++ l ea er++
  MMETSP1137-20121227|4168_1 107 VNLGQGFPDWQPPSFVVDEAYTALKD-GFHQYTRPAGHPALVQVLAQRYSTHLGREVEPMSEVAITVGASQALYVTLQALVNPGDEVLLLEPAFDLYYGQVRLAGATVVPVALKLDEaagEWQLDADALEKAVTPRTKLLILNSPHNPTGKVFTKAEMEAVADIVRRRpDLLVISDEVYKYIVHSGGEHVHFAALPDMFDRTVTLSSAGKTFSITGWQNGWCVGPARLIKPIQLMLPFVQFCATTPMQQALSRVLpladepyEGHSSYYAWLCAMYEQKRTLLGSALAECGVKPLAGQGGFFLMAdtsalHVPDEYMrqttaaapSMtrdwALCRWLALEAGVIAIPASPFYSAPNkhlaaNLVRFAFCKSDDTLIEASERIA 488
                 68999****************99987.579*****************************************************************************99999987653337999***************************************9976439******************************************************************************997776622222224455667789******************************986222224676553111111111111112344555667777777766655433111114567777777777777777766 PP

>> TIGR01265  tyr_nico_aTase: tyrosine/nicotianamine aminotransferases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  118.7   0.0   2.7e-37   6.6e-35      65     398 ..     133     490 ..     109     493 .. 0.82

  Alignments for each domain:
  == domain 1    score: 118.7 bits;  conditional E-value: 2.7e-37
   TIGR01265  65 kfngYapsvGvlaareavaeylskeleaklea.ddvvltsGcsqaielviealanaganiLvPrPgfplYetlakalglevrkydllpek...dweidldelealaDektvalvvinPsnPcGsvfsrdHlekvvevaekl.klliiaDEvYdklvfgdatfvplaklaskvP.vlslggiskrwlvPGWrlGWlivvdpkgiledtvlqglkkllqlildpatlvqgAlpdilektpk......effekkikvlkenaelvyeelkeipgltcvkPegamyllvklelellee............ikdDvdFceklvkEesvillPgsale.......lenylRitltveksvleealeRikeF 398
                  f  Y+  +G++a  + +a+++s +l  ++e+  +v +t G+sqa+ + ++al n+g+++L+  P+f lY+ + +  g  v    l  ++   +w++d d le+ +  +t++l+++ P nP+G vf++  +e v+++ ++   ll+i+DEvY+ +v+++ ++v +a l ++    ++l +  k + + GW+ GW +   p   ++   +q +  ++q    ++t +q+Al+ +l  +++      ++++    + ++   l+ ++l+e+ g+++   +g  +l+ + +  ++++            +  D   c  l+ E  vi +P+s +        + n +R ++  +  +l ea eRi++ 
  MMETSP1137-20121227|4168_1 133 GFHQYTRPAGHPALVQVLAQRYSTHLGREVEPmSEVAITVGASQALYVTLQALVNPGDEVLLLEPAFDLYYGQVRLAGATVVPVALKLDEaagEWQLDADALEKAVTPRTKLLILNSPHNPTGKVFTKAEMEAVADIVRRRpDLLVISDEVYKYIVHSGGEHVHFAALPDMFDrTVTLSSAGKTFSITGWQNGWCV--GPARLIKP--IQLMLPFVQFC--ATTPMQQALSRVLPLADEpyeghsSYYAWLCAMYEQKRTLLGSALAEC-GVKPLAGQGGFFLMADTSALHVPDeymrqttaaapsMTRDWALCRWLALEAGVIAIPASPFYsapnkhlAANLVRFAFCKSDDTLIEASERIAKL 490
                 47899*************************97479*****************************************999999988844432338******************************************9876538*************************888752699*****************87..56666666..33333444333..4566899999999765542222227899999999************98.89************9877544432222222222222889*******************9884222222246899*****************9876 PP

>> TIGR03947  viomycin_VioD: capreomycidine synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  105.9   0.1   1.8e-33   4.4e-31      51     250 ..     141     345 ..     126     490 .. 0.74

  Alignments for each domain:
  == domain 1    score: 105.9 bits;  conditional E-value: 1.8e-33
   TIGR03947  51 lGgeklraaladrlag..G....daekvlvthGsseaiylvltallrPGdevvvvdpayhslselavalgakvrrwpla...aerdfrpdlddlralvtdrtrlvvvnfPhnPtGasvderelsellelaaesgavll.Wdaafadlvyd...aeplpepsaaadrvisfgtlskafGlpGlrvGWcvaPkdllaelvrlrdyltlslsPlve 250
                  G + l + la+r++   G    +  +v +t+G+s+a+y++l+al++PGdev++ +pa++      + +ga+v +  l+   a+ +++ d d+l++ vt+rt+l+++n PhnPtG   +++e +++ +++ +    l+  d+ ++ +v++   +  ++      dr+++ +   k+f ++G + GWcv+P+ l+  +  +         P+v+
  MMETSP1137-20121227|4168_1 141 AGHPALVQVLAQRYSThlGrevePMSEVAITVGASQALYVTLQALVNPGDEVLLLEPAFDLYYGQVRLAGATVVPVALKldeAAGEWQLDADALEKAVTPRTKLLILNSPHNPTGKVFTKAEMEAVADIVRRRPDLLViSDEVYKYIVHSggeHVHFAALPDMFDRTVTLSSAGKTFSITGWQNGWCVGPARLIKPIQLML--------PFVQ 345
                 57788888899998752322222567899******************************9999999999999998887611245589*******************************************9988777626999******722244566666789***************************9998765443........3344 PP

>> TIGR01264  tyr_amTase_E: tyrosine aminotransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  105.9   0.0   1.9e-33   4.6e-31      65     397 ..     133     489 ..     116     493 .. 0.79

  Alignments for each domain:
  == domain 1    score: 105.9 bits;  conditional E-value: 1.9e-33
   TIGR01264  65 kynGyaptvGaleareaiaeyyankradgeleaddvvlasGcshalelaiealadaGenvlvPrPGfplyetlakaldievklynl...ladedweidlkelesliddktkalivnnPsnPcGsvfsrkhleellalaerl.klpiladeiyedlvfkgatflalaslssevP.ilslgGlakrllvPGWrlGWliihdrkgvlrdvkdGlkklsqrilGpntlvqGalkeil..rktP....qeyfdgvvsvlesnadlvyealaevvGlkpvkPkGamyllvkielekfke............lksdvefveklveeesvfvlPgsif.elP......gylrvvltvpkavleeavsrike 397
                  +  y+   G+++  + +a++y+ +   ++    +v ++ G+s+al ++++al+++G++vl+ +P f ly+  ++  + +v +  l    a  +w++d + le+ +  +tk+li+n P nP+G vf++  +e +  +++r   l +++de+y+ +v++g ++   a l       ++l    k + + GW+ GW +   r     +++  +++++     ++t +q al+ +l   + P     +y+  +  + e++ +l+ +alae+ G+kp   +G  +l+ + +  + ++            +  d  +++ l  e  v  +P+s f ++P      + +r     +  +l ea +ri++
  MMETSP1137-20121227|4168_1 133 GFHQYTRPAGHPALVQVLAQRYSTHLGREVEPMSEVAITVGASQALYVTLQALVNPGDEVLLLEPAFDLYYGQVRLAGATVVPVALkldEAAGEWQLDADALEKAVTPRTKLLILNSPHNPTGKVFTKAEMEAVADIVRRRpDLLVISDEVYKYIVHSGGEHVHFAALPDMFDrTVTLSSAGKTFSITGWQNGWCVGPARLIKPIQLMLPFVQFC-----ATTPMQQALSRVLplADEPyeghSSYYAWLCAMYEQKRTLLGSALAEC-GVKPLAGQGGFFLMADTSALHVPDeymrqttaaapsMTRDWALCRWLALEAGVIAIPASPFySAPnkhlaaNLVRFAFCKSDDTLIEASERIAK 489
                 478899999**************66666666689*************************************99998888887777721345568****************************************999876538****************99999999987765258999999************987766655555555555555.....46778899999873333342222689*********************8.9*************99987665432222222222226678888888888888888888866355522222246788888888888888888876 PP

>> TIGR01141  hisC: histidinol-phosphate transaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.4   0.0   1.4e-30   3.4e-28      32     306 ..     116     419 ..     100     427 .. 0.85

  Alignments for each domain:
  == domain 1    score: 96.4 bits;  conditional E-value: 1.4e-30
   TIGR01141  32 fgpsekvkealkeelk.klhrYpdpq.alelkealakylg......ve.eenillgnGsdelielliraflepgdavlvleptysmYevsakiagaevkevplked.....gqedleavleaakekvklvflasPnnPtGnllkreeiekvleev.e..dalVVvDeAYieFsee....asvlellaeypnlvvlrTlSKafgLAglRvGyaianaeiiealekvra..pynvsslaleaavaalrdsd........kiektveevkkererlleelkkleglevyeSkaNFvlikvkedaeelle 306
                 ++p+  v++++  +lk  +h+Y  p  + +l + la++++      ve + ++++++G+ +++ + ++a+++pgd+vl lep++ +Y   +++aga v+ v+lk d     +q d +a+++a++ ++kl  l sP+nPtG++++++e+e+v++ v +  d lV+ De Y    ++    ++++ l   ++  v+l +  K f++ g   G  ++ a +i+ ++ + +   +  +++ ++a  + l  +d        +++   +  +++r+ l ++l+++ g++   +++ F l+  ++ a ++ +
  MMETSP1137-20121227|4168_1 116 WQPPSFVVDEAYTALKdGFHQYTRPAgHPALVQVLAQRYSthlgreVEpMSEVAITVGASQALYVTLQALVNPGDEVLLLEPAFDLYYGQVRLAGATVVPVALKLDeaageWQLDADALEKAVTPRTKLLILNSPHNPTGKVFTKAEMEAVADIVrRrpDLLVISDEVYKYIVHSggehVHFAALPDMFDRTVTLSSAGKTFSITGWQNGWCVGPARLIKPIQLMLPfvQFCATTPMQQALSRVLPLADepyeghssYYAWLCAMYEQKRTLLGSALAEC-GVKPLAGQGGFFLMA-DTSALHVPD 419
                 788899999999999989*****9973579*********9999999652579************************************************99988888999********************************************845999*******97766666677888999999********************************999887533688999999998888754333344555578888888899999999999988.799999988888774.335555555 PP

>> TIGR03538  DapC_gpp: succinyldiaminopimelate transaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.8   0.0   1.9e-26   4.5e-24      27     316 ..     102     394 ..      92     491 .. 0.77

  Alignments for each domain:
  == domain 1    score: 82.8 bits;  conditional E-value: 1.9e-26
   TIGR03538  27 adleeialsiGePkhatPafvle.alvenleelskyPttkGlpelreaiaeWlerrfelpag..vdperqvlPvnGtrealfafvqavidraekalvvlPnPfyqiyeGaallagaepyflnc...taengfkpdfdavpeevWkrvqllfvcsPgnPtGavlsleelkkllelad.kydfiiasdecyselyldeaeaPvGlleaaaelGrddfkrllvfhslskrsnvPGlrsGfvaGdaellkeflryrty.hGcampiavqlas.iaaWedekhvren......ralyrekfaavleilga 316
                 a+++ ++l  G P  ++P+fv++ a ++  +++ +y   +G+p+l + +a    +r++ + g  v+p ++v    G+ +al+   qa++++ ++ l  l +P + +y G   laga+ + +     +a+ +++ d da+++ v  r++ll ++sP+nPtG+v+++ e++++ ++ + + d+++ sde y  +         G     a+l  d f r ++++s  k  ++ G + G+  G a l+k       + + ca+++++q+ s +    de +  ++       a+y++k   + + l++
  MMETSP1137-20121227|4168_1 102 AETRGVNLGQGFPDWQPPSFVVDeAYTALKDGFHQYTRPAGHPALVQVLA----QRYSTHLGreVEPMSEVAITVGASQALYVTLQALVNPGDEVL--LLEPAFDLYYGQVRLAGATVVPVALkldEAAGEWQLDADALEKAVTPRTKLLILNSPHNPTGKVFTKAEMEAVADIVRrRPDLLVISDEVYKYIVHSG-----GEHVHFAALP-DMFDRTVTLSSAGKTFSITGWQNGWCVGPARLIKPIQLMLPFvQFCATTPMQQALSrVLPLADEPYEGHSsyyawlCAMYEQKRTLLGSALAE 394
                 56678999***********9886266667789***********9877665....68877777779**************************98755..557789************97655431124667899***************************************98651679*********9887733.....3333444554.789*******************************98776655267888777776662444566644333211111135555555555555555 PP

>> TIGR01140  L_thr_O3P_dcar: threonine-phosphate decarboxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.4   0.0   1.2e-25   2.9e-23      28     290 ..     115     419 ..     101     438 .. 0.78

  Alignments for each domain:
  == domain 1    score: 80.4 bits;  conditional E-value: 1.2e-25
   TIGR01140  28 plgpp.....evleislealaryPdee.adelreaaaayygld.......aesvlavnGaqeaiql.lprllapkrv.lvlaptyseyaralraagaevvels............dleelaael.eeadllvvvnPnNPtGrllekeellalaerlkarggllvv.DEAFidftpae....slaalaealpglvVlrSltKffglaGlRlGfvvAepallerlkealgpWsvngpAqavgeaala............deawqkatrarlaaererlaallaalgllevvggtalFllvrtedaaalke 290
                 +++pp     e++++  + +++y  ++   +l + +a++y ++        ++v ++ Ga +a+++ l++l++p+++ l+l+p++  y  ++r aga+vv ++            d+++l++++  +++ll++  P+NPtG++++k+e++a+a+ +++r  llv+ DE + +++++     ++aal++ +++ v l S +K+f++ G   G++v+++ l++ ++ +l+   v   A    ++al+             +++ ++  a+++++r+ l ++la+ g+ ++++g+  F+l+  ++a ++ +
  MMETSP1137-20121227|4168_1 115 DWQPPsfvvdEAYTALKDGFHQYTRPAgHPALVQVLAQRYSTHlgrevepMSEVAITVGASQALYVtLQALVNPGDEvLLLEPAFDLYYGQVRLAGATVVPVAlkldeaagewqlDADALEKAVtPRTKLLILNSPHNPTGKVFTKAEMEAVADIVRRRPDLLVIsDEVYKYIVHSGgehvHFAALPDMFDRTVTLSSAGKTFSITGWQNGWCVGPARLIKPIQLMLPF--VQFCATTPMQQALSrvlpladepyegHSSYYAWLCAMYEQKRTLLGSALAECGV-KPLAGQGGFFLMADTSALHVPD 419
                 55555555555555555666666444444666666666665432222223689999********998999999998779************************************99999999988999*****************************99998877****9999865511345555555***********************************99986..444444444444444444887777777777888889999999999999999999.8888888888888777765544 PP

>> TIGR03537  DapC: succinyldiaminopimelate transaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.6   0.0   3.7e-25     9e-23       5     306 ..     109     423 ..     107     433 .. 0.84

  Alignments for each domain:
  == domain 1    score: 78.6 bits;  conditional E-value: 3.7e-25
   TIGR03537   5 fGtGdpkeptddfirkalldav.pevsqypsvlGekalreaiagylerrfgvkldpdaevlpsaGskeaifhlplafldpeeerkkviygtpgypvyerGalfaggealkvklkked...gflleldaveeailretkivwinyphnptGaeapasylkevaelarey.giilasdecyaeiysee...kpasvlevglenvlafhslskrsGmtGyrsgflaGdeelvsalrklrasvGvaspefvqaaataa..wsdd......ahvaerrkifkrkrdlfleflakkGlealasdatfylwvkvpegidaksyal 306
                 +G G p    + f+      a+     qy   +G+ al + +a+      g +++p +ev  + G+ +a++    a+++p     +v++ +p++  y    + ag+  ++v lk ++   ++ l+ da+e+a+  +tk++ +n phnptG   +++ ++ va+++r   +++++sde y  i +        ++l    ++++++ s  k   +tG++ g   G ++l++ ++ + + v  +  + +q+a +      d+      ++ a+   ++++kr l+ + la+ G++ la++  f+l   + + +  ++y++
  MMETSP1137-20121227|4168_1 109 LGQGFPDWQPPSFVVDEAYTALkDGFHQYTRPAGHPALVQVLAQRYSTHLGREVEPMSEVAITVGASQALYVTLQALVNPG---DEVLLLEPAFDLYYGQVRLAGATVVPVALKLDEaagEWQLDADALEKAVTPRTKLLILNSPHNPTGKVFTKAEMEAVADIVRRRpDLLVISDEVYKYIVHSGgehVHFAALPDMFDRTVTLSSAGKTFSITGWQNGWCVGPARLIKPIQLMLPFVQFCATTPMQQALSRVlpLADEpyeghsSYYAWLCAMYEQKRTLLGSALAECGVKPLAGQGGFFLMADTSALHVPDEYMR 423
                 577777766666665544444415689*******************************************99988999855...579************************998665233699****************************************9976439**********9987542234567899999************************************9999999999899886543113343111111346788999****************************988888877777765 PP

>> TIGR03539  DapC_actino: succinyldiaminopimelate transaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.5   0.0   2.6e-19   6.4e-17      25     306 ..     108     412 ..     100     488 .. 0.70

  Alignments for each domain:
  == domain 1    score: 59.5 bits;  conditional E-value: 2.6e-19
   TIGR03539  25 dlsvGtPv.dpvpalirealaeaad.apgyPqtaGteelreaivdalerrlgvkgldeeavlPviGtkelvallPtllGlgagdtvviPevayPtyevgarlagaeav...............aaddlteldpekvkliwlnsPanPtGrvlsveelrkvvalarer.gvvvasdecylelgWegeavsvldpevcggdlegllavhslskrsnlagyragfvaGdealvaellevrkhaGlmvpaPvqaamvaal..addehv......aeqkeryaarrellkaalekaGfriehseaglylWatr 306
                 +l  G P   p + ++ ea ++  d  + y + aG ++l + +++    +lg +    ++v  ++G+ +++ +   +  +++gd+v+  e a+  y    rlaga++v                ad+l+++ + ++kl+ lnsP nPtG+v ++ e+++v ++ r r + +v+sde y  ++  g     ++     + ++  +++ s  k+  ++g++ g+ +G + l++ +  +     +  ++P+q+a+   l  ad+  +      a   + y ++r+ll +al++ G +    ++g++l a  
  MMETSP1137-20121227|4168_1 108 NLGQGFPDwQPPSFVVDEAYTALKDgFHQYTRPAGHPALVQVLAQRYSTHLGREVEPMSEVAITVGASQALYVT-LQALVNPGDEVLLLEPAFDLYYGQVRLAGATVVpvalkldeaagewqlDADALEKAVTPRTKLLILNSPHNPTGKVFTKAEMEAVADIVRRRpDLLVISDEVYKYIVHSGGEH--VHFAALPDMFDRTVTLSSAGKTFSITGWQNGWCVGPARLIKPIQLMLPFVQFCATTPMQQALSRVLplADEPYEghssyyAWLCAMYEQKRTLLGSALAECGVKPLAGQGGFFLMADT 412
                 55556554133344667777777663589999999999999999999998888755578999999998876544.344489************************98733222111111111122333344446789************************9988764899*********99976532..4555666778888999*********************************************98765226754431111113345789*****************99999999998854 PP

>> TIGR03801  asp_4_decarbox: aspartate 4-decarboxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.2   0.0   7.1e-18   1.7e-15     178     320 ..     183     325 ..     169     329 .. 0.90

  Alignments for each domain:
  == domain 1    score: 54.2 bits;  conditional E-value: 7.1e-18
   TIGR03801 178 neLlkkgDkialllPiftPyleipelerydlevvkikadeakedgkatwqytdkelekLkdpkikalfvvnPsnPpsvaiseesieklakiveekrpdLmiltDDvygtfvdd..frsllaelp...antilvysfskyfgatGWrlg 320
                 + L++ gD++ ll P f  y    +l+   +  v++k dea       wq   + lek   p+ k l++  P nP++   +++ +e +a+iv++ rpdL++++D+vy   v++   +  +a+lp     t+++ s  k f +tGW+ g
  MMETSP1137-20121227|4168_1 183 QALVNPGDEVLLLEPAFDLYYGQVRLAGATVVPVALKLDEAAG----EWQLDADALEKAVTPRTKLLILNSPHNPTGKVFTKAEMEAVADIVRR-RPDLLVISDEVYKYIVHSggEHVHFAALPdmfDRTVTLSSAGKTFSITGWQNG 325
                 5799***********************9999999999998887....8********************************************98.************9988752245667887733358****************987 PP

>> TIGR03542  DAPAT_plant: LL-diaminopimelate aminotransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.4   0.0   1.7e-10   4.1e-08      65     267 ..     131     336 ..     122     491 .. 0.70

  Alignments for each domain:
  == domain 1    score: 30.4 bits;  conditional E-value: 1.7e-10
   TIGR03542  65 eetfrGyGpeqGldllreaiaeeeykgr...idp.eeifisdGakcdv.arllelfgsdktvavqdPvyPvyvdsavlaGragvldddgkykkivylpctkenefiPelpeekkvdiiylCsPnnPtGtvltkeqlkelvdyaken.dslilfdaayeafisdpslPksiyeiegakecaieirsfsktlGftGvrlgytvvPkelkve 267
                 ++ f  y    G ++l + +a+++ +     ++p +e+ i+ Ga   + + l+ l+++ + v + +P +  y    +laG+ +v+    k  +      ++ +++  +++  +++++++l sP nPtG v tk++++++ d  +++ d l++ d  y+  +++         +++    ++ + s  kt   tG + g+ v P  l   
  MMETSP1137-20121227|4168_1 131 KDGFHQYTRPAGHPALVQVLAQRYSTHLgreVEPmSEVAITVGASQALyVTLQALVNPGDEVLLLEPAFDLYYGQVRLAGA-TVVPVALKLDEAAGEWQLDADALEKAVT--PRTKLLILNSPHNPTGKVFTKAEMEAVADIVRRRpDLLVISDEVYKYIVHSGGEHVHFAALPDMFDRTVTLSSAGKTFSITGWQNGWCVGPARLIKP 336
                 6778889999999999998887655443668777469****99876652789****************************9.5555555555554444444444433333..3358*************************99876367788999998766666655556679******************************998733 PP

>> TIGR02080  O_succ_thio_ly: O-succinylhomoserine (thiol)-lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.0   2.8e-07   6.7e-05      65     162 ..     164     267 ..     135     287 .. 0.79

  Alignments for each domain:
  == domain 1    score: 19.6 bits;  conditional E-value: 2.8e-07
   TIGR02080  65 kGadavvtssGmsaiellviallkpdd..llvaP.hdcyGGtyrllkalakkgklkvqlvd...qsdeealekalaekpklvlietPsnPllrvvdiaklckla 162
                    +  +t     a+++ + al++p+d  ll+ P +d y G  rl  a      lk+       q d++aleka++ ++kl+++++P nP  +v   a++  +a
  MMETSP1137-20121227|4168_1 164 PMSEVAITVGASQALYVTLQALVNPGDevLLLEPaFDLYYGQVRLAGATVVPVALKLDEAAgewQLDADALEKAVTPRTKLLILNSPHNPTGKVFTKAEMEAVA 267
                 5556678888889***********988444555658***********9999999998766444599************************99987655554433 PP

>> TIGR01329  cysta_beta_ly_E: cystathionine beta-lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.0   6.3e-07   0.00015      55     168 ..     157     278 ..     111     286 .. 0.59

  Alignments for each domain:
  == domain 1    score: 18.4 bits;  conditional E-value: 6.3e-07
   TIGR01329  55 llakleka..eralavssGmaaldvivrllkagdeiia...gddlyGGtdrlltq.lksksgvvvvhvdtt..dlekvkavlgdlpktklvllesPtnPlikiv...dirkiaeaakalnedalv 168
                 +l++  +   e a++v++  a   ++  l+++gde++    + dly G+ rl    +++ +  + +    +  d ++++++++  p+tkl+ l+sP nP  k+    +++++a++++    d lv
  MMETSP1137-20121227|4168_1 157 HLGREVEPmsEVAITVGASQALYVTLQALVNPGDEVLLlepAFDLYYGQVRLAGAtVVPVALKLDEAAGEWqlDADALEKAVT--PRTKLLILNSPHNPTGKVFtkaEMEAVADIVRRRP-DLLV 278
                 333322222244455555444444555699*****99622256*********8651445554555556666125567888888..****************9961114444555544433.5555 PP

>> TIGR01325  O_suc_HS_sulf: O-succinylhomoserine sulfhydrylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0   2.9e-06   0.00069      79     175 ..     175     280 ..     123     295 .. 0.71

  Alignments for each domain:
  == domain 1    score: 16.1 bits;  conditional E-value: 2.9e-06
   TIGR01325  79 maailaallallsaGdhvva...srslfGstvvlvseilkrfGvevsfvdat...dlkaWeaalkantkllfletPsnPlael...vdiaalaelahavGaklvvd 175
                   a++ +l al++ Gd+v+    +  l+   v l    +    ++ +   ++   d +a e+a+ + tkll+l++P nP  ++   ++++a+a++      +lv+ 
  MMETSP1137-20121227|4168_1 175 SQALYVTLQALVNPGDEVLLlepAFDLYYGQVRLAGATVVPVALKLDEAAGEwqlDADALEKAVTPRTKLLILNSPHNPTGKVftkAEMEAVADIVRRRPDLLVIS 280
                 34777888888888888876222334555556666666666666666655433349999********************99985556899***9998887777664 PP

>> TIGR01326  OAH_OAS_sulfhy: O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0       1.4   3.4e+02     367     396 ..      20      49 ..       8      51 .. 0.81
   2 !   14.9   0.0   7.6e-06    0.0018      76     176 ..     168     279 ..     135     288 .. 0.80

  Alignments for each domain:
  == domain 1    score: -2.5 bits;  conditional E-value: 1.4
   TIGR01326 367 akslvihPastthkqlseeeqlkaGvtkdl 396
                 a+  +i   s+th+ ++ + +++ Gv++d 
  MMETSP1137-20121227|4168_1  20 ARCAAIVSSSATHSAVAFRSHVQMGVQQDS 49 
                 6788899999*********99****99986 PP

  == domain 2    score: 14.9 bits;  conditional E-value: 7.6e-06
   TIGR01326  76 lavasGqa.aillallnlaeaGdnivs...ssklYGGtynlfkvtlkrlGievrfvdkd...dleelekaidentkavfletignPkldv...lDiekvaevakka.gvpli 176
                 +a++ G + a  ++l++l++ Gd+++    +  lY G + l   t+  + ++  +   +   d ++leka+ ++tk + l++  nP+ +v   +++e+va++ ++  ++ +i
  MMETSP1137-20121227|4168_1 168 VAITVGASqALYVTLQALVNPGDEVLLlepAFDLYYGQVRLAGATVVPVALKLDEAAGEwqlDADALEKAVTPRTKLLILNSPHNPTGKVftkAEMEAVADIVRRRpDLLVI 279
                 45555554267889**********986222568***************99999998866333689**********************9994445788999888776244444 PP

>> TIGR01976  am_tr_V_VC1184: cysteine desulfurase family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0      0.62   1.5e+02     245     277 ..     120     152 ..     115     167 .. 0.86
   2 !   11.5   0.0   0.00012     0.029     138     190 ..     222     276 ..     175     289 .. 0.78

  Alignments for each domain:
  == domain 1    score: -0.8 bits;  conditional E-value: 0.62
   TIGR01976 245 efsedegperlElGtlqyellaGvvaavdylae 277
                 +f+ de  + l  G +qy   aG  a v+ la+
  MMETSP1137-20121227|4168_1 120 SFVVDEAYTALKDGFHQYTRPAGHPALVQVLAQ 152
                 578899999999*****************9997 PP

  == domain 2    score: 11.5 bits;  conditional E-value: 0.00012
   TIGR01976 138 evdeadgeleeadlaallsdrTRLVAvtaasnllGsi...vdlaaltelvhaaGal 190
                 e+ + +++l+ ++l+  + +rT+L  +++  n +G +    +++a++++v++   l
  MMETSP1137-20121227|4168_1 222 EA-AGEWQLDADALEKAVTPRTKLLILNSPHNPTGKVftkAEMEAVADIVRRRPDL 276
                 33.3489****************************884446899*****9986555 PP

>> TIGR01328  met_gam_lyase: methionine gamma-lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   0.00011     0.026      61     183 ..     147     284 ..     125     289 .. 0.68

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 0.00011
   TIGR01328  61 vdllerriaelegae....aavatasGm.gaiaatllsllkagdevisdetlyGctfalleda.ltkfgidvkfvdma.....speevkaaikdntkivyfetpanptlkli...dleavvrvakekg.vkvivdntf 183
                 v++l +r ++  g e    + va++ G   a+  tl +l++ gdev+  e  +   ++ ++ a  t   +  k  + a      ++ + +a+ ++tk++ +++p npt k+    ++eav+ + + +  ++vi d+ +
  MMETSP1137-20121227|4168_1 147 VQVLAQRYSTHLGREvepmSEVAITVGAsQALYVTLQALVNPGDEVLLLEPAFDLYYGQVRLAgATVVPVALKLDEAAgewqlDADALEKAVTPRTKLLILNSPHNPTGKVFtkaEMEAVADIVRRRPdLLVISDEVY 284
                 566666665544433111124555555415788899999999999999998888888887754145555555554443212224678999******************998634489999999988765999999988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (494 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       110  (0.0268162); expected 82.0 (0.02)
Passed bias filter:                      105  (0.0255973); expected 82.0 (0.02)
Passed Vit filter:                        26  (0.00633837); expected 4.1 (0.001)
Passed Fwd filter:                        17  (0.00414432); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              17  [number of targets reported over threshold]
# CPU time: 0.63u 0.17s 00:00:00.80 Elapsed: 00:00:00.73
# Mc/sec: 893.19
//
Query:       MMETSP1137-20121227|4169_1  [L=369]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.019   11.4   0.7      0.061    9.7   0.5    1.7  1  TIGR00990 3a0801s09: mitochondrial precursor proteins import receptor


Domain annotation for each model (and alignments):
>> TIGR00990  3a0801s09: mitochondrial precursor proteins import receptor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.5   1.5e-05     0.061     129     242 ..     172     306 ..     168     330 .. 0.62

  Alignments for each domain:
  == domain 1    score: 9.7 bits;  conditional E-value: 1.5e-05
   TIGR00990 129 klkekGnkayrnkdfdkaiely.........skalllke....dPvyy...snraacynaladlekvvedttaaleldpdyvkalnrranaydqlgkyadalldltass..liddfr...deqsaqaverllkkf 242
                 +l+ +Gn+ +r+ ++  a+e+y          ka   ++    d v+     n  a      d+   v+   + l++    +k l rra a+ +lg  a+a  dl +     + d++   +  sa+ + r + ++
  MMETSP1137-20121227|4169_1 172 QLRVNGNHKFRQGKYRXALEMYlqgcvgfelYKATNAQDqallDEVHVqlrKNVQAAAIKTRDWTICVASCDEVLRMVGGDTKSLYRRALAHWHLGEIAKATEDLEVILkqKVTDYNlvqEVASAKKLARAMLRQ 306
                 67777888888888888887773222222221233332222334454311257888888899******************************************9986311233443111334555555555444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (369 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       226  (0.0550951); expected 82.0 (0.02)
Passed bias filter:                      126  (0.0307167); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.17s 00:00:00.51 Elapsed: 00:00:00.45
# Mc/sec: 1082.31
//
Query:       MMETSP1137-20121227|4170_1  [L=539]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (539 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       358  (0.0872745); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.12s 00:00:00.51 Elapsed: 00:00:00.51
# Mc/sec: 1394.94
//
Query:       MMETSP1137-20121227|4171_1  [L=460]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.6e-16   56.3   0.0    9.9e-16   55.8   0.0    1.2  1  TIGR00231 small_GTP: small GTP-binding protein domain
    1.2e-06   26.0   0.1     0.0014   15.8   0.0    2.4  2  TIGR03596 GTPase_YlqF: ribosome biogenesis GTP-binding protein YlqF
     0.0001   19.3   0.1       0.16    8.8   0.0    2.2  2  TIGR02729 Obg_CgtA: Obg family GTPase CgtA
     0.0011   15.8   0.3     0.0076   13.1   0.2    1.9  1  TIGR03594 GTPase_EngA: ribosome-associated GTPase EngA
  ------ inclusion threshold ------
      0.012   12.6   1.3      0.027   11.4   0.9    1.6  1  TIGR00450 mnmE_trmE_thdF: tRNA modification GTPase TrmE
      0.028   11.7   0.0      0.049   10.9   0.0    1.3  1  TIGR02315 ABC_phnC: phosphonate ABC transporter, ATP-binding protein
      0.056   10.4   0.0       0.52    7.2   0.0    2.0  2  TIGR03597 GTPase_YqeH: ribosome biogenesis GTPase YqeH
       0.17    8.8   4.6       0.21    8.5   3.2    1.1  1  TIGR01628 PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family


Domain annotation for each model (and alignments):
>> TIGR00231  small_GTP: small GTP-binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.8   0.0   1.9e-18   9.9e-16       8     158 ..      83     229 ..      79     235 .. 0.85

  Alignments for each domain:
  == domain 1    score: 55.8 bits;  conditional E-value: 1.9e-18
   TIGR00231   8 ivGhvdvGKstLlnsllknkisiteskpgvtrdyvteqieedGktykvnllDTaGqedfdairrlyvreverslevvdivilvldveeglekqtkeiiheakkkgvpiilvvnKiDlkd.....dlktkvkslfaklnaepiielsaetgknidkl 158
                 ++G +++GKstL++sl +    ++ + p+v++   ++q++++G   ++ l+D++G +  + i++ y++ev ++l+vvd +   ++++e+  +     +   + k++p+++ +nK+Dl +     +l+++ +    +++++ +++ sa  gk i k 
  MMETSP1137-20121227|4171_1  83 VLGLDNAGKSTLISSLQGAV--EDVA-PTVGF--SKQQVKRNG--QELRLFDVGGGKGIRGIWDSYYAEVHAVLFVVDAADV-ERFKEAR-ELMHAAFAXPTLKDKPLLIIANKQDLDHavgaeELEESLRLHELQTKTCHVTQGSANVGKLIVKQ 229
                 89**************9987..5555.88886..57779****..67********999999*****************9988.*******.5555556666669*****************98888888888888888888999999887766655 PP

>> TIGR03596  GTPase_YlqF: ribosome biogenesis GTP-binding protein YlqF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0   2.8e-06    0.0014     116     171 ..      76     129 ..      50     131 .. 0.78
   2 !    7.8   0.0   0.00078       0.4      45     100 ..     175     231 ..     140     249 .. 0.77

  Alignments for each domain:
  == domain 1    score: 15.8 bits;  conditional E-value: 2.8e-06
   TIGR03596 116 kkairalvvGiPNvGKStliNrlakkkvakvgnkpgvTksqqwiklskeleLlDtP 171
                 +++   +v+G+ N GKStli +l +  v +v+ + g  k+q   + ++el L+D  
  MMETSP1137-20121227|4171_1  76 SPEQTWIVLGLDNAGKSTLISSLQG-AVEDVAPTVGFSKQQVK-RNGQELRLFDVG 129
                 4556789**************9976.57799999999987655.556899999975 PP

  == domain 2    score: 7.8 bits;  conditional E-value: 0.00078
   TIGR03596  45 lvknkprlivlnkaDladpektkkwlkyfe.ekgkkalavnakkkkkvkkilkaikk 100
                 ++k+kp li+ nk+Dl      +++++ ++ ++ ++ ++  ++ +++v k++ + +k
  MMETSP1137-20121227|4171_1 175 TLKDKPLLIIANKQDLDHAVGAEELEESLRlHELQTKTCHVTQGSANVGKLIVKQQK 231
                 578************************999533333333344445556666655555 PP

>> TIGR02729  Obg_CgtA: Obg family GTPase CgtA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.8   0.0   0.00031      0.16     162     185 ..      83     106 ..      81     113 .. 0.88
   2 !    8.4   0.0   0.00042      0.21     237     311 ..     146     217 ..     128     234 .. 0.71

  Alignments for each domain:
  == domain 1    score: 8.8 bits;  conditional E-value: 0.00031
   TIGR02729 162 lvGlpnaGkStllsavsaakpkia 185
                 ++Gl naGkStl+s++  a   +a
  MMETSP1137-20121227|4171_1  83 VLGLDNAGKSTLISSLQGAVEDVA 106
                 58*************998877776 PP

  == domain 2    score: 8.4 bits;  conditional E-value: 0.00042
   TIGR02729 237 rvllhlidlseedekdpvedleviekeLkkyseeLaekpelvvlnkidlleeeeleellkelkeel.ekkvlaisa 311
                 + +l+++d+++    + +++++ +++      ++L++kp l+++nk dl ++  +eel ++l+ +  ++k++++++
  MMETSP1137-20121227|4171_1 146 HAVLFVVDAADV---ERFKEARELMHAA-FAXPTLKDKPLLIIANKQDLDHAVGAEELEESLRLHElQTKTCHVTQ 217
                 678899999888...4455555444432.23578***************999888888888876554555555544 PP

>> TIGR03594  GTPase_EngA: ribosome-associated GTPase EngA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.1   0.2   1.5e-05    0.0076       5     124 ..      83     194 ..      69     234 .. 0.64

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 1.5e-05
   TIGR03594   5 ivGrpNVGKStLfNrlvkkrkAivedtpgvTRDrkygeaelkgkefiliDTgGleeeedelekeireqaelaieeadvilfvvdare.glteeDeeiaklL....rkskkpvilvvNKvdnkkee 124
                 ++G  N GKStL+  l +     ved++  T    +++++ +g+e++l D gG         k ir   +   +e +++lfvvda + +  +e +e+++        ++kp+++++NK d +++ 
  MMETSP1137-20121227|4171_1  83 VLGLDNAGKSTLISSLQGA----VEDVA-PTVGFSKQQVKRNGQELRLFDVGGG--------KGIRGIWDSYYAEVHAVLFVVDAADvERFKEARELMHAAfaxpTLKDKPLLIIANKQDLDHAV 194
                 6788899999988888664....44433.2445667888888899999999998........456666677777888899999887623333344444333111123458888899998876443 PP

>> TIGR00450  mnmE_trmE_thdF: tRNA modification GTPase TrmE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.9   5.2e-05     0.027     288     395 ..     144     276 ..      78     288 .. 0.66

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 5.2e-05
   TIGR00450 288 eadlvlyvlDaskplt..kddel....iitlkkkkkdlllvlNKiDLa..................eleilkselkltvsllsakqlkikelvdlltekinalyskekdeldlalisssea.lillekaiael 395
                 e   vl+v+Da   +   ++ el    ++    k+k+ll++ NK+DL                   ++   +++   +v +l++kq+k +e++d +t k+ + y   ++ ++  + ++  a     e+ +a+l
  MMETSP1137-20121227|4171_1 144 EVHAVLFVVDAADVERfkEARELmhaaFAXPTLKDKPLLIIANKQDLDhavgaeeleeslrlhelqTKTCHVTQGSANVGKLIVKQQKLQEGLDWVTTKVVDNYAALEERRQRDIEEQAAAdRKRKEERKARL 276
                 4455777777655432113334411114556789*************99999998888777665533334445556677889999999999999999999999988777777777777666555555555555 PP

>> TIGR02315  ABC_phnC: phosphonate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   9.7e-05     0.049      31      73 ..      81     122 ..      70     127 .. 0.85

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 9.7e-05
   TIGR02315  31 vaviGlsGaGkstllrsinrlveissgsillegkevtklkkke 73 
                   v+Gl  aGkstl+ s+++ ve+   ++ +++++v++  ++e
  MMETSP1137-20121227|4171_1  81 WIVLGLDNAGKSTLISSLQGAVEDVAPTVGFSKQQVKRN-GQE 122
                 5699*******************************9854.444 PP

>> TIGR03597  GTPase_YqeH: ribosome biogenesis GTPase YqeH
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   0.0     0.001      0.52     152     176 ..      75      99 ..      61     114 .. 0.80
   2 ?    0.8   0.0     0.094        48      88     118 ..     175     204 ..     137     240 .. 0.67

  Alignments for each domain:
  == domain 1    score: 7.2 bits;  conditional E-value: 0.001
   TIGR03597 152 arekkdvyvvGvtNVGKSsliNkll 176
                 ++ ++  +v+G  N GKS+li +l 
  MMETSP1137-20121227|4171_1  75 VSPEQTWIVLGLDNAGKSTLISSLQ 99 
                 45578899*************9875 PP

  == domain 2    score: 0.8 bits;  conditional E-value: 0.094
   TIGR03597  88 fvkenkvllvvNKidllpksvklekikewlk 118
                  +k++++l+++NK dl  ++v  e+++e l+
  MMETSP1137-20121227|4171_1 175 TLKDKPLLIIANKQDL-DHAVGAEELEESLR 204
                 4688999999999995.66666666666554 PP

>> TIGR01628  PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   3.2   0.00042      0.21     362     453 ..     267     357 ..     216     442 .. 0.73

  Alignments for each domain:
  == domain 1    score: 8.5 bits;  conditional E-value: 0.00042
   TIGR01628 362 qrkeqRkarLqqqfmqasaesrqlsigspvigaanisgrhqaaqqqavvtqavkqqlasqplnfkinqmmlstqnpskpeapnalaqlaqqr 453
                 +rke+RkarL+++++ ++ae  + + + +  ga ++s   +++qq     + v+ q ++ p +++    ++ +q ++ p++p +l +  q  
  MMETSP1137-20121227|4171_1 267 KRKEERKARLEAKRKAREAEELANAAAAQSAGAPEPSVAVPTPQQSEQGARPVADQQQQPPPQYE-PPSQPIPQPMQPPAQPPGLPPAHQPW 357
                 699***********998888888899999999998888778888888888888877777777887.34444444444445555555544433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (460 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       252  (0.0614334); expected 82.0 (0.02)
Passed bias filter:                      140  (0.0341297); expected 82.0 (0.02)
Passed Vit filter:                        31  (0.00755729); expected 4.1 (0.001)
Passed Fwd filter:                         8  (0.00195027); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.46u 0.17s 00:00:00.63 Elapsed: 00:00:00.53
# Mc/sec: 1145.57
//
Query:       MMETSP1137-20121227|4172_1  [L=129]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (129 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        40  (0.00975134); expected 82.0 (0.02)
Passed bias filter:                       37  (0.00901999); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.09s 00:00:00.24 Elapsed: 00:00:00.48
# Mc/sec: 354.72
//
Query:       MMETSP1137-20121227|4173_1  [L=235]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (235 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        49  (0.0119454); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.16s 00:00:00.37 Elapsed: 00:00:00.35
# Mc/sec: 886.21
//
Query:       MMETSP1137-20121227|4176_1  [L=378]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (378 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        84  (0.0204778); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.16s 00:00:00.44 Elapsed: 00:00:00.57
# Mc/sec: 860.20
//
Query:       MMETSP1137-20121227|4177_1  [L=121]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (121 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        82  (0.0199902); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.15s 00:00:00.31 Elapsed: 00:00:00.32
# Mc/sec: 499.08
//
Query:       MMETSP1137-20121227|4178_1  [L=197]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (197 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        45  (0.0109703); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.17s 00:00:00.36 Elapsed: 00:00:00.37
# Mc/sec: 702.75
//
Query:       MMETSP1137-20121227|4179_1  [L=190]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.04   11.9   0.8        0.2    9.7   0.1    2.3  3  TIGR01690 ICE_RAQPRD: integrative conjugative element protein, RAQPRD family


Domain annotation for each model (and alignments):
>> TIGR01690  ICE_RAQPRD: integrative conjugative element protein, RAQPRD family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0     0.094   3.8e+02      23      35 ..      57      69 ..      54     108 .. 0.79
   2 ?    9.7   0.1   4.9e-05       0.2      40      76 ..     117     150 ..      97     153 .. 0.74
   3 ?   -1.3   0.0      0.13   5.3e+02      23      45 ..     162     184 ..     153     189 .. 0.65

  Alignments for each domain:
  == domain 1    score: -0.9 bits;  conditional E-value: 0.094
   TIGR01690 23 reeLaavirqLda 35
                +++L + irqL+ 
  MMETSP1137-20121227|4179_1 57 HDNLRSFIRQLNI 69
                5788999999986 PP

  == domain 2    score: 9.7 bits;  conditional E-value: 4.9e-05
   TIGR01690  40 aeraaaaakqsekeRyhfDYarlraDlkriraGiqqy 76 
                 +++++   +q + ++ + DY+++r+D++r+++ ++++
  MMETSP1137-20121227|4179_1 117 MNESS---DQPPAKKQRADYSAFRNDVARLQKNLEDF 150
                 34444...4444556689*************988875 PP

  == domain 3    score: -1.3 bits;  conditional E-value: 0.13
   TIGR01690  23 reeLaavirqLdalerlaeraaa 45 
                 +++La ++  Ld      +raa+
  MMETSP1137-20121227|4179_1 162 QQKLAYILSSLDETAPEGSRAAE 184
                 66777777777766666666654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (190 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       140  (0.0341297); expected 82.0 (0.02)
Passed bias filter:                      110  (0.0268162); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.22u 0.20s 00:00:00.42 Elapsed: 00:00:00.28
# Mc/sec: 895.64
//
Query:       MMETSP1137-20121227|4180_1  [L=861]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.31    6.4  20.1      0.021   10.3  10.0    1.7  2  TIGR02169 SMC_prok_A: chromosome segregation protein SMC


Domain annotation for each model (and alignments):
>> TIGR02169  SMC_prok_A: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.2     0.017        70     289     316 ..      12      39 ..       4     114 .. 0.65
   2 ?   10.3  10.0   5.2e-06     0.021     667     796 ..     568     697 ..     561     756 .. 0.73

  Alignments for each domain:
  == domain 1    score: -1.4 bits;  conditional E-value: 0.017
   TIGR02169 289 eqlavkekleelkaeiekleraiaekee 316
                  q +++++l++++ e +++e+  +e++ 
  MMETSP1137-20121227|4180_1  12 AQQRLQAELKDFQTEAARAEQWRKECAA 39 
                 2333333333333333333322222221 PP

  == domain 2    score: 10.3 bits;  conditional E-value: 5.2e-06
   TIGR02169 667 elvsasekeklerlrerleeLereleslqselrriekrldelssklsdaekkieeiekeleqleeeeeklkerleeleeklseleeeleekkeelkeleaeieeleeklaklkealedleaelseekiee 796
                 + v+++ + ++++l+     L+r +  +++++r++++++   ++++++ae+++ ++++ ++ql e ee+++ r+  l+++ls+l +e ++  ++l++ +a +++  e+  + + a +   a+ + e +  
  MMETSP1137-20121227|4180_1 568 AAVERQREGEAAKLNSASAVLQRTRRGAAEHVREARRHAARFKERAEAAEAEVVQKMQLVSQLVEAEEEARGRQLHLQSQLSALGDETTARIAQLEAAAAALSSELEAEREGRRADARTLAHARAETVAL 697
                 5677888889999999999999999999999999999999999999999999999999999999999999999999999999999999999888888888777655555554444444444444444332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (861 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       192  (0.0468064); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.61u 0.16s 00:00:00.77 Elapsed: 00:00:00.56
# Mc/sec: 2029.33
//
Query:       MMETSP1137-20121227|4181_1  [L=135]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (135 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        84  (0.0204778); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.14s 00:00:00.29 Elapsed: 00:00:00.30
# Mc/sec: 593.95
//
Query:       MMETSP1137-20121227|4182_1  [L=214]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (214 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        50  (0.0121892); expected 82.0 (0.02)
Passed bias filter:                       41  (0.00999512); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.18s 00:00:00.41 Elapsed: 00:00:00.28
# Mc/sec: 973.99
//
Query:       MMETSP1137-20121227|4183_1  [L=702]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.1e-22   76.6  10.9    1.1e-21   75.2   7.6    1.6  1  TIGR03921 T7SS_mycosin: type VII secretion-associated serine protease mycosin
    9.8e-06   22.4   5.1    1.4e-05   21.9   3.5    1.1  1  TIGR03895 protease_PatA: cyanobactin maturation protease, PatA/PatG family


Domain annotation for each model (and alignments):
>> TIGR03921  T7SS_mycosin: type VII secretion-associated serine protease mycosin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.2   7.6   5.3e-25   1.1e-21      12     253 ..      15     263 ..      11     270 .. 0.79

  Alignments for each domain:
  == domain 1    score: 75.2 bits;  conditional E-value: 5.3e-25
   TIGR03921  12 GagvtVAViDtGvd.rhPrLpgev.........aGgDlve..sgdged..dcdghGTlvAglIAarpaegsGfvGvAPdakilpirqtskafe...dkeeksavgdletlAkairrAadsgAkVINiSevaclsaksaadeselgaAvkyalekdvvvvAaagnegqdgsktvvyPAay.....pgVlaVgsidrsgepssfslagpwvdvaApgenlvslspggdglasavgespleGtSfAaplVsgvAaLvrskfpeltaa 253
                 G+gv V ViD+G++ +h++  +++         +  D ve   gd  +  d  ghGT vAg +A+r+      +G+A  a++ ++++++ +     d  e+  +  +++  + ir+   +g k   + +    s++++a+ s+l+    +   ++v v +aagn+  d+ +  ++PA++       V++V++   + +++ +s +g  vd+ Apg+ ++s++  +   +++ g + ++GtS+AaplV+gv aLv +++p+ ++ 
  MMETSP1137-20121227|4183_1  15 GEGVHVFVIDSGINaNHRDFLDARgnsrigtsyNAFDRVEcaPGDMGAcmDTGGHGTHVAGTVAGRR------YGLASCATVHAVKISEGHAGasiDFLEAGIDWLIRYHNANIRWKWTNGKKLRSV-V--VASLNAEAPVSHLNSMFVKLTWNGVAVSVAAGNNDVDACQ--SSPASAggksgSAVVTVAASAIDDSKAPYSNWGSCVDLFAPGTGIASAAAPD---VTD-GYTVMSGTSMAAPLVAGVMALVSEAYPNYSPL 263
                 9*************99*997543322231111234566667744443337888*************8......***************9888744333344445557777889**********9988.3..3489999999***********************9888866..8888753111457**********************************98555...222.234578**********************9986 PP

>> TIGR03895  protease_PatA: cyanobactin maturation protease, PatA/PatG family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.9   3.5   6.9e-09   1.4e-05      83     176 ..     154     253 ..     136     259 .. 0.77

  Alignments for each domain:
  == domain 1    score: 21.9 bits;  conditional E-value: 6.9e-09
   TIGR03895  83 klcqenniLi.vaaaGndgceClhvPaal.....psvlavGAmdadGrplefsnwGeaykeqGilApGenilgakpg...getvrksGtslAtavvtgvaalL 176
                  + + n + + vaa+ nd  +C   Pa+      ++v++v A   d     +snwG       ++ApG +i +a      ++ +  sGts+A+++v+gv al+
  MMETSP1137-20121227|4183_1 154 VKLTWNGVAVsVAAGNNDVDACQSSPASAggksgSAVVTVAASAIDDSKAPYSNWGSCVD---LFAPGTGIASAAAPdvtDGYTVMSGTSMAAPLVAGVMALV 253
                 444556666615555566778******9733333569*******************9865...8*******9886432448999***************9974 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (702 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        70  (0.0170648); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.13s 00:00:00.58 Elapsed: 00:00:00.59
# Mc/sec: 1570.45
//
Query:       MMETSP1137-20121227|4184_1  [L=420]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.6e-80  267.4   0.7    1.6e-73  246.1   0.0    2.0  2  TIGR01327 PGDH: phosphoglycerate dehydrogenase
     0.0018   14.9   0.1     0.0049   13.5   0.0    1.6  2  TIGR00936 ahcY: adenosylhomocysteinase
     0.0056   13.9   0.0      0.018   12.2   0.0    1.8  2  TIGR01771 L-LDH-NAD: L-lactate dehydrogenase


Domain annotation for each model (and alignments):
>> TIGR01327  PGDH: phosphoglycerate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  246.1   0.0   1.1e-76   1.6e-73       1     318 [.      18     344 ..      18     350 .. 0.95
   2 !   21.4   0.1   1.4e-08     2e-05     445     517 ..     343     413 ..     340     419 .. 0.81

  Alignments for each domain:
  == domain 1    score: 246.1 bits;  conditional E-value: 1.1e-76
   TIGR01327   1 kvlvadklseegiellkekelevdvktglskeellekik......dydalivRSatkvteelleaaekLkvigRaGvGvDNidieaatkkGilvvNaPegntisaaElalalllalaRkipqadksvkekkWerkkflGtElygktlGviGlGriGsevakrakalgmkvlayDPyiseekaeklgvellkdldellaeaDvitvHvPltketkgligkeelakmKkgviivNcaRGGiidEkALvealeegkvraaalDvfekEPpt......dnklleldnvvvtpHlgAsteEaqenvavevaeevlealkgevvesavNlpaldae 318
                 ++l+ ++++e ++ +++ ++++v+vk  ls +el ++i+       ++a+ vRS+t +t ell++a++L  +g   +G DN  +e a+++ i v NaP +nt s+aEl +  ++al+R++ +  ++ +++ W + +    E+++ktlG+iG G++Gs+v+  a++lgm+v+ +D  + ++ a   +v+ l+++ ell+ ++ +t+HvP+ + t++li + +++ mK+g +++N+aRG ++d +A + a+ +g++++ + Dvf +EP +      ++++  l+nv++tpH+g steEaqe+++vev++ ++++++  ++  +vN p++d  
  MMETSP1137-20121227|4184_1  18 RILLLENIHEVAVRAFEAQGFQVEVKVALSPDELFARIEgtnghePIHAIGVRSKTAMTPELLKKAKRLLCVGCFCIGTDNHALEVAAEQAIPVFNAPFSNTRSVAELIIGQIIALSRQLVDRSTECHNGGWYKVSKGCCEVRAKTLGIIGYGHVGSQVSVLAESLGMRVVYFD--VIPKLALGNAVQ-LSSMAELLSTSNYVTLHVPQLESTRNLITETQINMMKRGSYLLNAARGDVVDIDAFAAAVRSGHLAGGTADVFPQEPKKngdnlfESPMRGLKNVILTPHIGGSTEEAQEAIGVEVSNAIIKFINSGITYGTVNFPEIDIA 344
                 68999********************************96333333579**************************************************************************************999999**********************************..445566666788.6779*************************************************************************9999999999999***********************************************9865 PP

  == domain 2    score: 21.4 bits;  conditional E-value: 1.4e-08
   TIGR01327 445 vdlepegilliiknkDkpGvigkvgsllgeagiNiasmqlgrkekggealmllslDeevseevleeikevpei 517
                 +  +p  + l+  +k++pGv++k+ ++l +a++Ni + qlg +e+ g   +++ + +e se  l++ike+++ 
  MMETSP1137-20121227|4184_1 343 IAQRPGTHRLLNVHKNVPGVLSKINTALCDADVNIVQQQLGTNESIG--YLVVDMASESSELALSKIKELDTS 413
                 4456788999*******************************987664..445566677778889999999865 PP

>> TIGR00936  ahcY: adenosylhomocysteinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0      0.24   3.3e+02      48      96 ..      67     113 ..      52     121 .. 0.76
   2 !   13.5   0.0   3.6e-06    0.0049     205     296 ..     161     253 ..     153     265 .. 0.85

  Alignments for each domain:
  == domain 1    score: -2.4 bits;  conditional E-value: 0.24
   TIGR00936  48 lhltvktavLietLkalGaevalascnilstqddvaaalakakgvpvfa 96 
                 + +  kta+  e Lk+      + +c  + t +++    a+ + +pvf 
  MMETSP1137-20121227|4184_1  67 IGVRSKTAMTPELLKK-AKRLLCVGCFCIGTDNHALEVAAE-QAIPVFN 113
                 5566777776665554.456778899999999999988888.6999996 PP

  == domain 2    score: 13.5 bits;  conditional E-value: 3.6e-06
   TIGR00936 205 GktvvvaGyGwvGkGvaerlrGlGarvivtevdpikaleaamdGfevvtmeeaakegdifvta.tGnkdvireehlekmkdgailanaGhfdv 296
                  kt+ ++GyG vG  v+  ++ lG rv+  +v p  al  a++  ++ ++   ++   + v     ++++i+e +++ mk g+ l na   dv
  MMETSP1137-20121227|4184_1 161 AKTLGIIGYGHVGSQVSVLAESLGMRVVYFDVIPKLALGNAVQLSSMAELLSTSNYVTLHVPQlESTRNLITETQINMMKRGSYLLNAARGDV 253
                 578889********************************9998877777777777777777755257899****************99987775 PP

>> TIGR01771  L-LDH-NAD: L-lactate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.2   0.0   1.3e-05     0.018       1      56 [.     166     219 ..     166     251 .. 0.87
   2 ?   -1.7   0.0      0.23   3.1e+02      76     215 ..     345     376 ..     338     398 .. 0.54

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 1.3e-05
   TIGR01771   1 iiGagaVGssvafalltqgladelvliDinedkaegealdlsdaasflkskvkvka 56 
                 iiG g+VGs+v  ++l ++l   +v  D+ ++ a g+a+ ls +a +l+++  v+ 
  MMETSP1137-20121227|4184_1 166 IIGYGHVGSQV--SVLAESLGMRVVYFDVIPKLALGNAVQLSSMAELLSTSNYVTL 219
                 8********96..7899****************************99988766654 PP

  == domain 2    score: -1.7 bits;  conditional E-value: 0.23
   TIGR01771  76 qkpgetRlelveknvk.ilksivkevvksgfdgillvvsNPvDiltyvvlklsglpkerviGsGtvLdtaRlrrllaeklevdpksvhayvlGEHGdsevavwssakiagvplkelleekekekekelkeiekevrdaaye 215
                 q+pg +Rl  v+knv  +l+                                                                                                             +i++++ da  +
  MMETSP1137-20121227|4184_1 345 QRPGTHRLLNVHKNVPgVLS-------------------------------------------------------------------------------------------------------------KINTALCDADVN 376
                 55555665555555531333.............................................................................................................344444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (420 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       190  (0.0463189); expected 82.0 (0.02)
Passed bias filter:                      145  (0.0353486); expected 82.0 (0.02)
Passed Vit filter:                        18  (0.0043881); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.40u 0.16s 00:00:00.56 Elapsed: 00:00:00.48
# Mc/sec: 1154.90
//
Query:       MMETSP1137-20121227|4185_1  [L=300]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.2e-58  195.5   0.0    4.4e-58  193.6   0.0    1.8  1  TIGR00063 folE: GTP cyclohydrolase I
    4.6e-06   24.4   0.0    7.1e-06   23.7   0.0    1.2  1  TIGR03139 QueF-II: 7-cyano-7-deazaguanine reductase


Domain annotation for each model (and alignments):
>> TIGR00063  folE: GTP cyclohydrolase I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  193.6   0.0   2.1e-61   4.4e-58       2     178 ..     105     293 ..     104     295 .. 0.90

  Alignments for each domain:
  == domain 1    score: 193.6 bits;  conditional E-value: 2.1e-61
   TIGR00063   2 ekavkeilesigeDlnregLletPkrvaklyaelfkGldeanekklkkaifeek............vdelvlvrdielyslCehhlvpflGkvsvayiPkekviGlsklarivelfarrlqvqerltkqiaealqeilepkgvavvveakhlCvkarGvrktgsatvtsalrGvfkedqktreeflelv 178
                 ++ +  +l+++geD+ r gLl+tP r ak++ ++++G++++  +++ +a f  +               lv+v+di ++slCehhl+pf+G+++++y+P + v+Glsklari+++farrlq+qe+lt+qia al+ +++p+gvavv+e +h+C+ arG +++++ t tsal G++ ed++ r+ f+ ++
  MMETSP1137-20121227|4185_1 105 ASLLAAVLRELGEDPSRVGLLDTPMRAAKALRFMTSGYQNTLAEVTGSALFPLErprfalqpdlvtAPGLVVVKDIVIHSLCEHHLLPFFGRAHIGYLPSQAVLGLSKLARIADMFARRLQLQEQLTQQIADALNSVVQPRGVAVVLECTHMCMCARGCKQAQALTRTSALSGLLAEDASLRQXFMLHI 293
                 5678899*********************************9999888887754311111111111145799*******************************************************************************************************************987 PP

>> TIGR03139  QueF-II: 7-cyano-7-deazaguanine reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.7   0.0   3.4e-09   7.1e-06      28      96 ..     183     251 ..     174     269 .. 0.93

  Alignments for each domain:
  == domain 1    score: 23.7 bits;  conditional E-value: 3.4e-09
   TIGR03139  28 tslCPktgqPDfativieYvPdqklvelkslklyllsfrnegafheevtnkilddlvkllePrklevig 96 
                  slC +  +P f++  i Y+P q+++ l  l      f  + + +e++t++i+d l ++++Pr + v+ 
  MMETSP1137-20121227|4185_1 183 HSLCEHHLLPFFGRAHIGYLPSQAVLGLSKLARIADMFARRLQLQEQLTQQIADALNSVVQPRGVAVVL 251
                 589************************************************************999975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (300 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       138  (0.0336421); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.25u 0.15s 00:00:00.40 Elapsed: 00:00:00.39
# Mc/sec: 1015.30
//
Query:       MMETSP1137-20121227|4186_1  [L=287]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (287 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        48  (0.0117016); expected 82.0 (0.02)
Passed bias filter:                       42  (0.0102389); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.17s 00:00:00.39 Elapsed: 00:00:00.42
# Mc/sec: 901.93
//
Query:       MMETSP1137-20121227|4187_1  [L=313]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (313 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       133  (0.0324232); expected 82.0 (0.02)
Passed bias filter:                      116  (0.0282789); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.18s 00:00:00.45 Elapsed: 00:00:00.47
# Mc/sec: 878.99
//
Query:       MMETSP1137-20121227|4188_1  [L=206]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (206 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        52  (0.0126767); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.12s 00:00:00.31 Elapsed: 00:00:00.32
# Mc/sec: 849.68
//
Query:       MMETSP1137-20121227|4189_1  [L=385]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.9e-09   35.1   3.7    2.8e-09   34.5   2.5    1.2  1  TIGR00599 rad18: DNA repair protein rad18
  ------ inclusion threshold ------
       0.56    7.4   6.7       0.91    6.7   4.7    1.2  1  TIGR00570 cdk7: CDK-activating kinase assembly factor MAT1


Domain annotation for each model (and alignments):
>> TIGR00599  rad18: DNA repair protein rad18
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.5   2.5   1.4e-12   2.8e-09      21      86 ..     191     258 ..     182     288 .. 0.80

  Alignments for each domain:
  == domain 1    score: 34.5 bits;  conditional E-value: 1.4e-12
   TIGR00599  21 apldtslRChvCkdffkaPvltsCsHtFCslCi.RrcLseepkCPlCraedqEskL.RknfvveEive 86 
                 +++++ l C +C d +  Pv   C+H FC  C+ R   ++ p+CP Cra      + + n+++ ++++
  MMETSP1137-20121227|4189_1 191 KKFEEELQCPICMDLLYEPVSIKCGHSFCRSCLlRATEHQRPRCPCCRAVLESNYIpKVNVLLWNLIQ 258
                 689**************************999637777888*******97544333244566655555 PP

>> TIGR00570  cdk7: CDK-activating kinase assembly factor MAT1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   4.7   0.00044      0.91       2      56 ..     195     244 ..     194     252 .. 0.90

  Alignments for each domain:
  == domain 1    score: 6.7 bits;  conditional E-value: 0.00044
   TIGR00570   2 ddqaCPrCkttkyrnPslkllvnvCghtlCesCvdllfvrGsgsCpeCdtpLrkn 56 
                 ++  CP+C    y   s+k     Cgh +C sC  +   +    Cp C  +L  n
  MMETSP1137-20121227|4189_1 195 EELQCPICMDLLYEPVSIK-----CGHSFCRSCLLRATEHQRPRCPCCRAVLESN 244
                 5678*****9999999998.....*************************999766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (385 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        79  (0.0192589); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.29u 0.17s 00:00:00.46 Elapsed: 00:00:00.41
# Mc/sec: 1239.41
//
Query:       MMETSP1137-20121227|4190_1  [L=368]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (368 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        55  (0.0134081); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.14s 00:00:00.41 Elapsed: 00:00:00.35
# Mc/sec: 1387.77
//
Query:       MMETSP1137-20121227|4191_1  [L=192]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (192 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        98  (0.0238908); expected 82.0 (0.02)
Passed bias filter:                       96  (0.0234032); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.15s 00:00:00.32 Elapsed: 00:00:00.34
# Mc/sec: 745.35
//
Query:       MMETSP1137-20121227|4192_1  [L=202]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.03   10.2   0.2      0.087    8.6   0.1    1.6  1  TIGR00870 trp: transient-receptor-potential calcium channel protein


Domain annotation for each model (and alignments):
>> TIGR00870  trp: transient-receptor-potential calcium channel protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   0.1   2.1e-05     0.087     128     160 ..     116     148 ..      47     160 .. 0.69

  Alignments for each domain:
  == domain 1    score: 8.6 bits;  conditional E-value: 2.1e-05
   TIGR00870 128 ftkgitalilAihkqnyeivklLlekgasvear 160
                   +g t+l++A+    +ei + Ll+ gas+ +r
  MMETSP1137-20121227|4192_1 116 NDAGVTPLMVAAAAGHVEIMRSLLAAGASLALR 148
                 45799***********************98755 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (202 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       117  (0.0285227); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.22u 0.13s 00:00:00.35 Elapsed: 00:00:00.50
# Mc/sec: 533.24
//
Query:       MMETSP1137-20121227|4193_1  [L=110]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (110 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        60  (0.014627); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.16s 00:00:00.31 Elapsed: 00:00:00.38
# Mc/sec: 382.07
//
Query:       MMETSP1137-20121227|4194_1  [L=259]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.017   12.6   0.1      0.025   12.0   0.1    1.3  1  TIGR03764 ICE_PFGI_1_parB: integrating conjugative element, PFGI_1 class, ParB family protein
       0.16    8.7  12.6      0.024   11.5   3.9    2.0  2  TIGR00414 serS: serine--tRNA ligase
        1.1    5.9   9.1        1.5    5.5   6.3    1.1  1  TIGR03794 NHLM_micro_HlyD: NHLM bacteriocin system secretion protein
        1.4    6.9  13.9        1.6    6.7   4.8    2.1  2  TIGR02894 DNA_bind_RsfA: transcription factor, RsfA family


Domain annotation for each model (and alignments):
>> TIGR03764  ICE_PFGI_1_parB: integrating conjugative element, PFGI_1 class, ParB family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.1   2.4e-05     0.025     119     171 ..     101     155 ..      95     220 .. 0.79

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 2.4e-05
   TIGR03764 119 ekalgvekakelyekelgkslsqr.eLae.rlkedGypisqssisrmedtveyLl 171
                  +a+++ k k++ye+++ ++++q+ ++++ ++++dG   + s+++ m+ + + L 
  MMETSP1137-20121227|4194_1 101 KRAVAILKQKKMYESQKERTMAQQfNVEQiMFAQDGLKETASTVAAMKGANKELK 155
                 69***************99999872454424789*************98877775 PP

>> TIGR00414  serS: serine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.4     0.025        26      66      96 ..      61      91 ..      45     104 .. 0.67
   2 ?   11.5   3.9   2.3e-05     0.024      12      93 ..     110     188 ..     104     213 .. 0.76

  Alignments for each domain:
  == domain 1    score: 1.5 bits;  conditional E-value: 0.025
   TIGR00414 66 ekkdkieelkkelkelkeeleeleaelkele 96
                +  ++ e+l +++ +l++el+++ +++k+++
  MMETSP1137-20121227|4194_1 61 SMDKRGESLDQKIMKLDKELARYTEQMKKMK 91
                3333367777888888888888887777765 PP

  == domain 2    score: 11.5 bits;  conditional E-value: 2.3e-05
   TIGR00414  12 elvkeklkarglsveidleklselddklkkllskieelqkkrnelskeigkkkaekkdkieelkkelkelkeeleeleaelk 93 
                 ++++e++k+r ++++ ++e+++ ++d lk++ s++  +++ ++el+k++++ + ++ d    l+ ++ +l e+ ee++a+l 
  MMETSP1137-20121227|4194_1 110 KKMYESQKERTMAQQFNVEQIMFAQDGLKETASTVAAMKGANKELKKQFKSININQVDD---LQDDMADLLEQAEEVQAALG 188
                 56899*******************************************99977777664...45555555555555554443 PP

>> TIGR03794  NHLM_micro_HlyD: NHLM bacteriocin system secretion protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   6.3    0.0014       1.5     129     250 ..      61     187 ..      53     196 .. 0.68

  Alignments for each domain:
  == domain 1    score: 5.5 bits;  conditional E-value: 0.0014
   TIGR03794 129 kflkskeaLeetigklreeeaaLsqevakqrqllsrklaklkrarillqqarkeq.ekrdeadkaeaeyelqtkadeeel...etvva....klkqadlqlasvaekeletvearikevreeieeleakl 250
                 ++ k+ e L+++i kl +e a  ++++ k++ +  ++  + + ++il q++  e  ++r  a++ ++e       ++++l     +va      k+++ q +s++  ++ +++ ++ ++ e+ ee++a l
  MMETSP1137-20121227|4194_1  61 SMDKRGESLDQKIMKLDKELARYTEQMKKMKPGPAKQSVQKRAVAILKQKKMYESqKERTMAQQFNVEQ---IMFAQDGLketASTVAamkgANKELKKQFKSININQVDDLQDDMADLLEQAEEVQAAL 187
                 56688899***********************99999988877888877777766623334444444444...3333333311134444466656666777777777777777777777777777777766 PP

>> TIGR02894  DNA_bind_RsfA: transcription factor, RsfA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   0.4    0.0073       7.5     107     143 ..      53      89 ..      44      92 .. 0.84
   2 ?    6.7   4.8    0.0015       1.6      57     138 ..     101     184 ..      93     193 .. 0.76

  Alignments for each domain:
  == domain 1    score: 4.5 bits;  conditional E-value: 0.0073
   TIGR02894 107 eklkeeleslqkrneeLekeleklkkkksvieedyet 143
                   l++ ++s+ kr e+L++++ kl k+   + e+ + 
  MMETSP1137-20121227|4194_1  53 PTLQDATASMDKRGESLDQKIMKLDKELARYTEQMKK 89 
                 5788999999999999999999999999999888765 PP

  == domain 2    score: 6.7 bits;  conditional E-value: 0.0015
   TIGR02894  57 kkyeeaielakkqrkerkra.aesltledviefLqnlketleeaeklrkekeklkeeleslq.krneeLekeleklkkkksvie 138
                 k+  + +++ k    +++r+ a+++ +e+++   + lket +++++++  +++lk++ +s++ +++++L+ +++ l ++ + ++
  MMETSP1137-20121227|4194_1 101 KRAVAILKQKKMYESQKERTmAQQFNVEQIMFAQDGLKETASTVAAMKGANKELKKQFKSINiNQVDDLQDDMADLLEQAEEVQ 184
                 444444444444444444554788899987766677999******************999753789********9999987765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (259 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       434  (0.105802); expected 82.0 (0.02)
Passed bias filter:                      154  (0.0375427); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.31u 0.18s 00:00:00.49 Elapsed: 00:00:00.35
# Mc/sec: 976.72
//
Query:       MMETSP1137-20121227|4195_1  [L=409]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (409 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        84  (0.0204778); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.15s 00:00:00.43 Elapsed: 00:00:00.50
# Mc/sec: 1079.67
//
Query:       MMETSP1137-20121227|4196_1  [L=64]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        64  (0.0156021); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.14s 00:00:00.27 Elapsed: 00:00:00.25
# Mc/sec: 337.89
//
Query:       MMETSP1137-20121227|4197_1  [L=76]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (76 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       120  (0.029254); expected 82.0 (0.02)
Passed bias filter:                      118  (0.0287665); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.18s 00:00:00.31 Elapsed: 00:00:00.49
# Mc/sec: 204.72
//
Query:       MMETSP1137-20121227|4198_1  [L=457]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (457 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       42  (0.0102389); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.16s 00:00:00.47 Elapsed: 00:00:00.56
# Mc/sec: 1058.23
//
Query:       MMETSP1137-20121227|4200_1  [L=230]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (230 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        68  (0.0165773); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.16s 00:00:00.38 Elapsed: 00:00:00.55
# Mc/sec: 551.95
//
Query:       MMETSP1137-20121227|4201_1  [L=250]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (250 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       107  (0.0260848); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.14s 00:00:00.35 Elapsed: 00:00:00.36
# Mc/sec: 916.59
//
Query:       MMETSP1137-20121227|4202_1  [L=327]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.6e-45  151.2  10.4      2e-24   84.3   0.9    2.0  2  TIGR03989 Rxyl_3153: oxidoreductase, Rxyl_3153 family
    4.5e-38  129.0   2.8    5.1e-38  128.8   2.0    1.1  1  TIGR00692 tdh: L-threonine 3-dehydrogenase
    2.1e-34  116.7  14.0    1.4e-33  114.0   9.7    1.9  1  TIGR03451 mycoS_dep_FDH: mycothiol-dependent formaldehyde dehydrogenase
    6.7e-34  115.3   7.6      4e-20   70.0   0.3    2.0  2  TIGR02818 adh_III_F_hyde: S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase
    1.2e-32  111.2   6.9    1.4e-32  110.9   4.8    1.1  1  TIGR02822 adh_fam_2: zinc-binding alcohol dehydrogenase family protein
    1.4e-30  104.4  10.5    1.6e-30  104.2   7.3    1.1  1  TIGR03366 HpnZ_proposed: putative phosphonate catabolism associated alcohol dehydrogenase
    3.5e-29   99.8   5.4    4.3e-29   99.5   3.8    1.0  1  TIGR03201 dearomat_had: 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase
    1.8e-26   90.7   5.8    6.1e-18   62.7   1.0    2.3  2  TIGR02824 quinone_pig3: putative NAD(P)H quinone oxidoreductase, PIG3 family
    7.8e-23   78.6   3.6    1.1e-18   65.0   2.5    2.9  1  TIGR01751 crot-CoA-red: crotonyl-CoA reductase
    1.1e-11   42.0   2.8    1.6e-10   38.2   1.9    2.0  1  TIGR02823 oxido_YhdH: putative quinone oxidoreductase, YhdH/YhfP family
      3e-11   40.4   7.1      5e-11   39.6   4.9    1.2  1  TIGR02819 fdhA_non_GSH: formaldehyde dehydrogenase, glutathione-independent
    2.5e-05   21.7   0.1      0.032   11.5   0.0    2.2  2  TIGR02817 adh_fam_1: zinc-binding alcohol dehydrogenase family protein


Domain annotation for each model (and alignments):
>> TIGR03989  Rxyl_3153: oxidoreductase, Rxyl_3153 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.3   0.9     6e-27     2e-24      12     106 ..       2      96 ..       1     101 [. 0.96
   2 !   72.0   1.5   3.3e-23   1.1e-20     139     314 ..     108     284 ..     100     318 .. 0.87

  Alignments for each domain:
  == domain 1    score: 84.3 bits;  conditional E-value: 6e-27
   TIGR03989  12 kkfeveeielddPkegevkvklaasGlChsdehlvtGdlplekyPvvgGheGaGvvekvGpgvtelkeGdhvvlsfipaCGrCrlCakGlqnlCd 106
                 ++f ++ + + +P++gev++++ a+ lCh++ h+++G l l  +P+  Ghe aG++++vG+gv++ + G+ vv  +   CG Cr+Ca G+q++C 
  MMETSP1137-20121227|4202_1   2 QPFVLDMVPIPEPNAGEVLIEVRAAALCHTELHFADGTLDLGVMPITMGHEAAGTIVEVGSGVSRGRIGERVVSYYYVGCGICRWCADGNQQICA 96 
                 67788889999***********************************************************************************6 PP

  == domain 2    score: 72.0 bits;  conditional E-value: 3.3e-23
   TIGR03989 139 gtfseytvveeasvvkidkdipldkaalvgCgvttGfGsavkaadvkaGdtvvvvGiGGvGinavqGaavaGarkvvavdpvefkrekalklGathavasie..ealelvaeltnGkgadkaiitvgeveg.elieealklvakgGrvvvtglakladedvklnlleltllqkelkGal 314
                 g +++++ v+    v + ++i ++kaa +gCgvtt +  a++ ++vk+G+  +v+G+ GvG + vq  ++ G  +vva+   + +rekal lGa  a++s++    ++ v+ lt G+gad     vg  e  +     + +++++Gr v++g ++ +++  ++ ++ l ++++++ G++
  MMETSP1137-20121227|4202_1 108 GGLAQFIAVPAVNAVFLPENITFEKAAPIGCGVTTAV-HAISLSNVKPGEWAAVYGVNGVGFGLVQVLKHRGL-HVVAISRSASRREKALALGADAAIDSTDamTVAQAVRALTGGEGADVLFECVGRRETmDACVGFAGALGRRGRLVLVGYTAGDEHAFRCHPIPLIVYEQSIIGSV 284
                 668999*****************************98.689****************************9995.89**********************766511567899*************9999865425566677899*********************************9997 PP

>> TIGR00692  tdh: L-threonine 3-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  128.8   2.0   1.5e-40   5.1e-38      13     261 ..       6     257 ..       2     323 .. 0.86

  Alignments for each domain:
  == domain 1    score: 128.8 bits;  conditional E-value: 1.5e-40
   TIGR00692  13 ltevpvpelgknevlikvkatsicGtdvhiynwdewaqkrikvpqvlGhevaGevvgiGeevegvkvGdyvsaethivcGkcvacrrGkshvcrntk.ivGvdtaGvfaeyvvvpadnifknpkdidpelaa.iqeplGnavdtv.lesdlaGesvlvsGaGpiGllavavakaaGasqvivsdkneyrlelakkvGatrvvnvake.dlvkvvaeltsgeGvdvvlelsGapkaleqgldava...ngGrvallg 261
                 l  vp+pe++ +evli v+a+++c t++h  +    + +   +p  +Ghe aG +v++G +v+  ++G++v +  ++ cG c+ c  G++ +c n k   G   +G +a+++ vpa n+   p++i+ e aa i   +  av+++ l+    Ge  +v G+  +G+  v v k+ G  +v+++ ++  r+e a  +Ga+ +++ ++   + + v +lt geG+dv  e  G  ++++  +  +    + Gr+ l+g
  MMETSP1137-20121227|4202_1   6 LDMVPIPEPNAGEVLIEVRAAALCHTELHFAD---GTLDLGVMPITMGHEAAGTIVEVGSGVSRGRIGERVVSYYYVGCGICRWCADGNQQICANLKaEYGFISDGGLAQFIAVPAVNAVFLPENITFEKAApIGCGVTTAVHAIsLSNVKPGEWAAVYGVNGVGFGLVQVLKHRGL-HVVAISRSASRREKALALGADAAIDSTDAmTVAQAVRALTGGEGADVLFECVGRRETMDACVGFAGalgRRGRLVLVG 257
                 6679*************************764...55667779****************************************************86269**************************977665277788999998736666789**********************97.5888889999**************98765267899*******************999998876554001455666655 PP

>> TIGR03451  mycoS_dep_FDH: mycothiol-dependent formaldehyde dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  114.0   9.7     4e-36   1.4e-33      15     279 ..       5     260 ..       1     274 [. 0.86

  Alignments for each domain:
  == domain 1    score: 114.0 bits;  conditional E-value: 4e-36
   TIGR03451  15 eledivvpdpgpgevvvkiqacgvchtdlayreggis.defpfllgheaagvveavgegvtdvepgdyvvlnwravcgecrackrgrpkycfdthnaekkmtledgtelsaalgigafaektlvaagqctkvdpaadpavagllgcgvmaglgaavntgevkrgdsvavigvggvgeaaiagaalagakkiiavdiddkklerarelgathtvnsse.edvveaireltggfgadvvidavgrpetykqafy...ardlagtvvlvgvpt 279
                  l+ + +p+p +gev+++++a+++cht+l++ +g+++   +p  +gheaag++ +vg+gv+  + g+ vv  +   cg cr c  g+ + c + + ae    ++dg       g+  f+    v a +++ +  +   + a  +gcgv + +  a+  ++vk g+  av gv gvg   +   +  g  +++a+  ++ + e+a  lga  +++s++   v +a+r+ltgg gadv  + vgr et         a    g++vlvg   
  MMETSP1137-20121227|4202_1   5 VLDMVPIPEPNAGEVLIEVRAAALCHTELHFADGTLDlGVMPITMGHEAAGTIVEVGSGVSRGRIGERVVSYYYVGCGICRWCADGNQQICANLK-AEY-GFISDG-------GLAQFIA---VPAVNAVFLPENITFEKAAPIGCGVTTAVH-AISLSNVKPGEWAAVYGVNGVGFGLVQVLKHRGL-HVVAISRSASRREKALALGADAAIDSTDaMTVAQAVRALTGGEGADVLFECVGRRETMDACVGfagALGRRGRLVLVGYTA 260
                 566788*****************************983468**************************************************8754.322.233444.......5555554...55566778888889999999*****99875.799*********************9999888885.799************************93588899**********************998753112456679999999765 PP

>> TIGR02818  adh_III_F_hyde: S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.0   0.3   1.2e-22     4e-20      12     112 ..       2     102 ..       1     108 [. 0.95
   2 !   50.0   1.1   1.4e-16   4.8e-14     132     354 ..     102     321 ..      99     326 .. 0.78

  Alignments for each domain:
  == domain 1    score: 70.0 bits;  conditional E-value: 1.2e-22
   TIGR02818  12 eplkieevdvelpkkgevlvrivatgvchtdaftlsgadpegvfpvilghegagiveavgegvtslkvgdhviplytaecgeckfcksgktnlcvavretq 112
                 +p+ ++ v +  p++gevl+++ a+ +cht+++   g+   gv+p+ +ghe ag +++vg gv   + g+ v+  y   cg c++c  g+ ++c+++++  
  MMETSP1137-20121227|4202_1   2 QPFVLDMVPIPEPNAGEVLIEVRAAALCHTELHFADGTLDLGVMPITMGHEAAGTIVEVGSGVSRGRIGERVVSYYYVGCGICRWCADGNQQICANLKAEY 102
                 7888999999*************************************************************************************998765 PP

  == domain 2    score: 50.0 bits;  conditional E-value: 1.4e-16
   TIGR02818 132 yhymgtstfseytvvaeislakinkeaalekvcllgcgvttgigavlntakveegatvavfglggiglsviqgaklakasriiaidineakfelakklgatdlvnpkdydkpiqeviveltdggvdysfecignvnvmraalesahk.g.wgesiiigvagagqeistr..pfqlvtgrvwkgsafggvkgrt.elpglveqylkgeiklddfvtetmpledineafd 354
                 y ++    ++++  v+ +  + + ++ ++ek   +gcgvtt + a+   ++v+ g+  av+g+ g+g+  +q  k  +   ++ai    ++ e+a  lga   ++ +d     q v       g d  fec+g  ++m a++  a   g  g+ +++g  +ag+e + r  p+ l+   v+  s +g v     +l   ++  l  + +++ +v   +pl + ++ +d
  MMETSP1137-20121227|4202_1 102 YGFISDGGLAQFIAVPAVNAVFLPENITFEKAAPIGCGVTTAVHAIS-LSNVKPGEWAAVYGVNGVGFGLVQVLKHRG-LHVVAISRSASRREKALALGADAAIDSTDAMTVAQAVRALTGGEGADVLFECVGRRETMDACVGFAGAlGrRGRLVLVGY-TAGDEHAFRchPIPLI---VYEQSIIGSVGATLdDLKTSIQ--LVADGAVETIVDSVLPLTEFQAGLD 321
                 566667778999999*****************************985.679*********************988755.689************************99888777777666678****************99876543231567777775.5677665551155554...7888888888554313444443..4445566777777777777766665 PP

>> TIGR02822  adh_fam_2: zinc-binding alcohol dehydrogenase family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  110.9   4.8   4.1e-35   1.4e-32      20     222 ..       9     211 ..       2     259 .. 0.94

  Alignments for each domain:
  == domain 1    score: 110.9 bits;  conditional E-value: 4.1e-35
   TIGR02822  20 eevprpgegellvrvracgvcrtdlhvsegdlpvhrervipghevvgevveagaaegefavgdrvgiawlrrtcgvcrycrrgaenlcpasr.ytgwdadggyaeyttvpaafayrlptgyadeelapllcagiigyrallraelpeggrlglygfggsahltaqvalaqgaevhvltrgaaarklalalgaasaqgaadrppe 222
                  ++p p  ge+l+ vra  +c t+lh ++g l +    ++ ghe  g +ve+g + ++  +g+rv +++    cg+cr+c  g +++c + +   g+ +dgg a++ +vpa  a  lp +++ e+ ap+ c      +a+  +++ +g    +yg  g      qv   +g +v  ++r a+ r+ alalga +a +++d+  +
  MMETSP1137-20121227|4202_1   9 VPIPEPNAGEVLIEVRAAALCHTELHFADGTLDLGVMPITMGHEAAGTIVEVGSGVSRGRIGERV-VSYYYVGCGICRWCADGNQQICANLKaEYGFISDGGLAQFIAVPAVNAVFLPENITFEKAAPIGCGVTTAVHAISLSNVKPGEWAAVYGVNGVGFGLVQVLKHRGLHVVAISRSASRREKALALGADAAIDSTDAMTV 211
                 5789999*********************************************************9.89999*****************98652359******************************************************************************************************998655 PP

>> TIGR03366  HpnZ_proposed: putative phosphonate catabolism associated alcohol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  104.2   7.3   4.8e-33   1.6e-30       1     256 [.      12     260 ..      12     312 .. 0.89

  Alignments for each domain:
  == domain 1    score: 104.2 bits;  conditional E-value: 4.8e-33
   TIGR03366   1 palaeGevlvrvllatvCGsdlhtvaGrre.gklpsvlGheavGevvalgseeaaavdgeklavGqRvvwsvavsCgrCerCrrgltqkCeslr.kyGheslasgwelsGglaehvvllaGvaivavpddlpdavaapaaCatatvaaaleaagdlegrrvlvlGaGmLGLtaaaaaeerGasrviavDpsaeRrelaaafGaealaeeeelaevr...keatdgravdvalelsGasaaveaale...sldvgGvvvlvGsva 256
                 p++++Gevl++v++a++C ++lh   G  + g +p  +Ghea G +v++gs++      ++ ++G+Rvv    v+Cg C+ C  g +q C  l+  yG           Ggla+ + ++a v+ v +p++++ + aap++C + t + a+   +   g    v+G+  +G   + ++++rG  +v+a+  sa+Rre a+a+Ga a ++++    v    ++ t g+++dv++e  G  ++++a++    +l   G +vlvG  a
  MMETSP1137-20121227|4202_1  12 PEPNAGEVLIEVRAAALCHTELHFADGTLDlGVMPITMGHEAAGTIVEVGSGV------SRGRIGERVVSYYYVGCGICRWCADGNQQICANLKaEYGFI-------SDGGLAQFIAVPA-VNAVFLPENITFEKAAPIGCGVTTAVHAISLSNVKPGEWAAVYGVNGVGFGLVQVLKHRGL-HVVAISRSASRREKALALGADAAIDSTDAMTVAqavRALTGGEGADVLFECVGRRETMDACVGfagALGRRGRLVLVGYTA 260
                 67899**********************9763889******************8......8899***************************9985245555.......78********998.666789*******************************************************.8********************99998766555434488899********************96222566678899999665 PP

>> TIGR03201  dearomat_had: 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.5   3.8   1.3e-31   4.3e-29       9     316 ..       2     304 ..       1     322 [. 0.89

  Alignments for each domain:
  == domain 1    score: 99.5 bits;  conditional E-value: 1.3e-31
   TIGR03201   9 kplvkeeleiaelgagevvvkvaGcGvchtdldyyydgvrtnhalplalGheisGrviqagagaa.slvGkavivpavipcGecelcksGkGticraqkmpGndlq.GGfashivvpakglcavdearlkaagleleevsvvadavttpyqaavqaglkkgdlviviGvGGvGgyavqvakalGaavvaidideeklemvkkaGadlilnpkdisarevkkaikafakarGlrstewkilevsGskpGqesaldl...lsfgatlvvvGytm.dkvevrls..klmafdaralGnwGcppdlyaaaldlvldgkid 316
                 +p+v + ++i+e++agev+++v    +cht+l+ + dg      +p+++Ghe +G++++ g+g +   +G  v+    + cG c  c  G+ +ic + k     +  GG a  i vpa     + e      ++ +e+ + +   vtt   a+  +++k+g+ + v Gv GvG   vqv k  G  vvai     + e   + Gad  +++ d     v +a++a +  +G       ++e+ G +   ++ +++   l   ++lv+vGyt  d+  +r     l+ ++  ++G+ G   d   +  +lv dg ++
  MMETSP1137-20121227|4202_1   2 QPFVLDMVPIPEPNAGEVLIEVRAAALCHTELH-FADGTLDLGVMPITMGHEAAGTIVEVGSGVSrGRIGERVVSYYYVGCGICRWCADGNQQICANLKAEYGFISdGGLAQFIAVPAVNAVFLPE------NITFEKAAPIGCGVTTAVHAISLSNVKPGEWAAVYGVNGVGFGLVQVLKHRGLHVVAISRSASRREKALALGADAAIDSTDA--MTVAQAVRALTGGEGAD----VLFECVGRRETMDACVGFagaLGRRGRLVLVGYTAgDEHAFRCHpiPLIVYEQSIIGSVGATLDDLKTSIQLVADGAVE 304
                 6889999*************************7.678999999******************9975168*****************************9987666655**********987766666......8999**************************************************************************9986..56899999999988865....69*****9999988876422278899*******9845677777522699************************999876 PP

>> TIGR02824  quinone_pig3: putative NAD(P)H quinone oxidoreductase, PIG3 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.9   0.1   1.7e-10   5.7e-08      18      97 ..       7      86 ..       2     100 .. 0.83
   2 !   62.7   1.0   1.8e-20   6.1e-18      88     250 ..     104     269 ..      99     326 .. 0.83

  Alignments for each domain:
  == domain 1    score: 29.9 bits;  conditional E-value: 1.7e-10
   TIGR02824 18 seaplpelkagevlikvaAaGvNrpDvlQraGkYppppgasei.lGLEvaGevvavgeevskfkvGdrvcaLva.gGgyaey 97
                  +p pe++agevli+v+Aa +   ++    G+ +   g+ +i +G E aG++v+vg++vs+ ++G+rv++    g g    
  MMETSP1137-20121227|4202_1  7 DMVPIPEPNAGEVLIEVRAAALCHTELHFADGTLDL--GVMPItMGHEAAGTIVEVGSGVSRGRIGERVVSYYYvGCGICRW 86
                56899***************************9876..6666538************************9875414455555 PP

  == domain 2    score: 62.7 bits;  conditional E-value: 1.8e-20
   TIGR02824  88 LvagGgyaeyvvveakqvlpvpeglslveaAalpEtffTvwsnlfelaklkagetvLihggasGiGttaiqlakalgakvlvtagsdekleaaekLGadvainyreed.FvevvkeetegkGvdvilDivggsy.leknl...kalakdGrlvliallggakaeldla 250
                  ++ Gg a++++v+a +++ +pe++++++aA +   ++T+ ++ ++l+++k+ge++ + g   G+G   +q+ k+ g +v++  +s+ + e a +LGad+ai+ ++    +++v++ t g+G+dv++++vg    ++  +    al + Grlvl++   g +  +  +
  MMETSP1137-20121227|4202_1 104 FISDGGLAQFIAVPAVNAVFLPENITFEKAAPIGCGVTTAVHA-ISLSNVKPGEWAAVYG-VNGVGFGLVQVLKHRGLHVVAISRSASRREKALALGADAAIDSTDAMtVAQAVRALTGGEGADVLFECVGRREtMDACVgfaGALGRRGRLVLVGYTAGDEHAFRCH 269
                 6789******************************999999887.5899**********96.68****************************************99975156789*****************86514444322268899**********9998765544 PP

>> TIGR01751  crot-CoA-red: crotonyl-CoA reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.0   2.5   3.2e-21   1.1e-18      23     368 ..       2     317 ..       1     326 [. 0.85

  Alignments for each domain:
  == domain 1    score: 65.0 bits;  conditional E-value: 3.2e-21
   TIGR01751  23 kalrveqvpvpelgpdevLvavmaagvnynnvWaalgePvsvlaarrkrgkddepfhiiGsdasGvvlrvGegvkrvkvGDevvvsclqvdeeeeesragDpmlsseqr.iwGyetnyGslaefalvedsqllPkPkhLtWeeaacllLtaatayrqLvgkkpaelkpGdavLiWGaaGGLGsyaiqlaraaGgipvavvssedkaeiarelGaeavidrqdfdlkgrlpdlnseavkewtkevkrfgkairevlGeedvkivlehsGr.atfpvsvyvv...krgGmvvicggttGynldlDary..LWmkqkriqGshfanlreasevnrlvakgrvdPtLskvysleeig 368
                 + + ++ vp+pe   +evL++v aa++ + +   a g     l+         +p   +G +a+G +++vG+gv r ++G++vv    +       + +g+  ++++ +  +G+  ++G+la+f  v +   +  P+ +t+e aa      +ta + +      ++kpG+   ++G   G+G   +q+ + +G   va+  s  ++e a+ lGa+a id +d                        + +a+r ++G+e  ++ +e +Gr +t+ + v  +    r G +v++g t+G ++ +      L +  + i+Gs  a l + +  ++lva+g v+  +++v +l e  
  MMETSP1137-20121227|4202_1   2 QPFVLDMVPIPEPNAGEVLIEVRAAALCHTELHFADGT----LDLGV------MPI-TMGHEAAGTIVEVGSGVSRGRIGERVVSYYYVGCGICRWCADGNQQICANLKaEYGFI-SDGGLAQFIAVPAVNAVFLPENITFEKAAPIGCGVTTAVHAIS---LSNVKPGEWAAVYGVN-GVGFGLVQVLKHRGLHVVAISRSASRREKALALGADAAIDSTDAM---------------------TVAQAVRALTGGEGADVLFECVGRrETMDACVGFAgalGRRGRLVLVGYTAGDEHAFRCHPipLIVYEQSIIGSVGATLDDLKTSIQLVADGAVETIVDSVLPLTEFQ 317
                 66778999999999999999999999998887776653....33222......232.4799***********************999999999999999977788775516***6.78******************************99999988765...568***********87.578889********************************9876542.....................2346788899*************64799999965422268899**********9999876423788999*****************************9999998865 PP

>> TIGR02823  oxido_YhdH: putative quinone oxidoreductase, YhdH/YhfP family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.2   1.9   4.5e-13   1.6e-10      88     250 ..     101     265 ..       6     297 .. 0.83

  Alignments for each domain:
  == domain 1    score: 38.2 bits;  conditional E-value: 4.5e-13
   TIGR02823  88 dlgvshaGGyseyarvkadwvvplPeglslkeamilGtAGfTAaLsvealekagltpeegevlVtGAtGgVgslavalLsklGyevvavtgkkeeeeylkelGakevisreelee..ekkkplekerwaga.vDtvGgkvlanvl....kqlkyggavaacGlaagaele 250
                 + g   +GG+++++ v+a  +v lPe+++ ++a+ +G    TA   v+a++ ++++p e    V G + gVg   v++L+++G +vva++  ++++e   +lGa++ i+ ++  +  ++ ++l+  + a +  ++vG + +  ++     +l  +g    +G +ag e  
  MMETSP1137-20121227|4202_1 101 EYGFISDGGLAQFIAVPAVNAVFLPENITFEKAAPIGCGVTTA---VHAISLSNVKPGE-WAAVYGVN-GVGFGLVQVLKHRGLHVVAISRSASRREKALALGADAAIDSTDAMTvaQAVRALTGGEGADVlFECVGRRETMDACvgfaGALGRRGRLVLVGYTAGDEHA 265
                 5688899******************************755554...6777778888886.56789987.599999*********************************98876541147899987766554158999876665551222466778888888888886644 PP

>> TIGR02819  fdhA_non_GSH: formaldehyde dehydrogenase, glutathione-independent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.6   4.9   1.5e-13     5e-11      39     267 ..      19     233 ..      13     243 .. 0.88

  Alignments for each domain:
  == domain 1    score: 39.6 bits;  conditional E-value: 1.5e-13
   TIGR02819  39 vilkvvttnicgsdqhmvrgrtt.aeaglvlgheitgevievgrdveflkigdivsvpfniacgrcrsckekktgvclnvnparagaaygyvdmggwvggqseyvlvpyadfnllkfpdrdqalekirdltmlsdilptgyhgavtagvktgstvyiagagpvglaaaasarllgaavvivgdlneerlaqarsfgcet.vdlkkdatlaeqieqilgepevdaavdavgf 267
                 v++ v ++ +c ++ h+  g      + + +ghe +g ++evg+ v + +ig+ v   + + cg cr c + + ++c n+      a yg++      gg ++++ vp    n + +p+ + ++ek   + +    + t  h    + vk+g    + g   vg+   +  +  g  vv +   ++ r  +a ++g ++ +d     t+a+ +  + g    d+  ++vg 
  MMETSP1137-20121227|4202_1  19 VLIEVRAAALCHTELHFADGTLDlGVMPITMGHEAAGTIVEVGSGVSRGRIGERVVSYYYVGCGICRWCADGNQQICANLK-----AEYGFISD----GGLAQFIAVPAV--NAVFLPE-NITFEKAAPIGCG---VTTAVHAISLSNVKPGEWAAVYGVNGVGFGLVQVLKHRGLHVVAISR-SASRREKALALGADAaIDSTDAMTVAQAVRALTGGEGADVLFECVGR 233
                 7788899999*******9998651456799*************************99*********************986.....67***986....5789******76..6666787.5789999988875...689************************************99999876.5678899*****985378877788999999999************95 PP

>> TIGR02817  adh_fam_1: zinc-binding alcohol dehydrogenase family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.5   0.0   9.4e-05     0.032      22      90 ..       9      80 ..       4      96 .. 0.87
   2 !    8.2   0.0   0.00093      0.32     155     206 ..     160     210 ..     104     256 .. 0.78

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 9.4e-05
   TIGR02817 22 lakPkpkgrdllvevkavsvnPvdtkvrkkvapeaeelkilGwdaaGvvkavGeevtlfkvGdev...fyaG 90
                ++ P+p+  ++l+ev+a +    +      +      +  +G++aaG +++vG+ v+  ++G++v   +y G
  MMETSP1137-20121227|4202_1  9 VPIPEPNAGEVLIEVRAAALCHTELHFADGTLDLGVMPITMGHEAAGTIVEVGSGVSRGRIGERVvsyYYVG 80
                5779999999*****************9999999999999***********************986645555 PP

  == domain 2    score: 8.2 bits;  conditional E-value: 0.00093
   TIGR02817 155 iGaaGGvgsiliqlarqlteltviatasraesqewvkelGahavidhskplk 206
                 + +  Gvg  l+q++++  +l+v+a +  a  +e ++ lGa+a id +  ++
  MMETSP1137-20121227|4202_1 160 VYGVNGVGFGLVQVLKH-RGLHVVAISRSASRREKALALGADAAIDSTDAMT 210
                 4567899999***9986.5899*99999999999************998775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (327 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       192  (0.0468064); expected 82.0 (0.02)
Passed bias filter:                      145  (0.0353486); expected 82.0 (0.02)
Passed Vit filter:                        23  (0.00560702); expected 4.1 (0.001)
Passed Fwd filter:                        12  (0.0029254); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.47u 0.16s 00:00:00.63 Elapsed: 00:00:00.54
# Mc/sec: 799.27
//
Query:       MMETSP1137-20121227|4203_1  [L=352]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0036   12.9  41.6    0.00077   15.1  25.0    1.9  1  TIGR02168 SMC_prok_B: chromosome segregation protein SMC
     0.0075   11.8  37.8        0.1    8.0  11.1    2.2  1  TIGR02169 SMC_prok_A: chromosome segregation protein SMC


Domain annotation for each model (and alignments):
>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1  25.0   3.7e-07   0.00077     689     984 ..       6     302 ..       2     303 .. 0.64

  Alignments for each domain:
  == domain 1    score: 15.1 bits;  conditional E-value: 3.7e-07
   TIGR02168 689 eeleekiaelekelkelekeleeleeeleklrkeleelerklselkkelerlekeveqleerlaqlekeleeleeereeleeeleeaeeelkeaeeeieeleaeieqlkeelk.alrealseleaeltelkeeaaekeerleslekeiaalekeleeleeqieeleeeiesleaeieeleeeleeleeeleellkekasleealaelreeleelseelrelekkvkelereleelreklaqlelrle.eleveiaelqerlseeyeleleeaeeleek..veeeeeeaeeelkrleekik 984
                 +ele+k+++le+el + +   ++  + l + +++ + l+r+ +el+ ++  le+  ++++++l+++++el+ ++  r+e  ++l+++  + +++ + +++ + +++ + +++  +l+e+ ++le +lt++  + ++++++l++ e++ +al+ + ++l+e+ ++  ee+   ++ i++le+e ++l  +l e++  ++s+  +l++ r + + l++++++le+++k+ e ++ e++++ a++ ++ + +++   ++l+ +   + ++ l +ae ++++  +   +++ e+++k+le+k++
  MMETSP1137-20121227|4203_1   6 AELENKVKALEQELGTERGHKNSFSSLLLQEKEKNDVLTRSNRELQDQVGVLETGKKAVADKLTEAKRELAGAATLRAEVVRALQQELCHRDNSVALLQAKNCSLQGAANRVRaELEEKATDLEGKLTTETLNKESLSSNLSQEEAKNDALTWNNQKLQEKVSRYDEEARCFRSDISKLERENRRLYCDLREHKGLVSSRGVQLHTNRIKITMLEQKVESLESDKKAVEVKVGETNKAKADAAAKHAdNIRTLWEKLLVK---DNQIALVQAEVRHREaeASLVKSAFEDKVKDLEQKLA 302
                 67899999999999999999999998888888888888999999999999999999999999999999988888888888777776655555555555555555555555443134555555555555555555555666666666666777777777777777777777777777777777777777777777777777777777777777777777777777777777777766666655544330222222222222...2222222222222221133334458999999999875 PP

>> TIGR02169  SMC_prok_A: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.0  11.1   4.9e-05       0.1     334     497 ..       7     171 ..       2     177 .. 0.53

  Alignments for each domain:
  == domain 1    score: 8.0 bits;  conditional E-value: 4.9e-05
   TIGR02169 334 klkeeieelereieeekkereklkeelkelkeeleelraeleevdkeaaelreelkelkekleklkeelnelkreldrlleelkrleeelaelkaelerieekiaeleeeleelaeeikka....eqkleqlkedlekaekelrklkeeleklekelselerelaele 497
                 +l++++++le+e+ +e+ ++++ ++ l ++ke+ + l +   e++ +   l    k++  kl ++k+el    +      e  + l++el +  + ++ +++k   l+ +++ +++e++++    e+kl +   ++e+++++l++ +++ ++l  + ++l++++++ +
  MMETSP1137-20121227|4203_1   7 ELENKVKALEQELGTERGHKNSFSSLLLQEKEKNDVLTRSNRELQDQVGVLETGKKAVADKLTEAKRELAGAAT---LRAEVVRALQQELCHRDNSVALLQAKNCSLQGAANRVRAELEEKatdlEGKLTTETLNKESLSSNLSQEEAKNDALTWNNQKLQEKVSRYD 171
                 56778888999999999999999888888888888777777777777777777777777777777777655442...2223333444444444444444444444444444444444443311112233333333344444444444444444444444444444433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (352 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       334  (0.0814237); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.14s 00:00:00.53 Elapsed: 00:00:00.65
# Mc/sec: 714.77
//
Query:       MMETSP1137-20121227|4205_1  [L=199]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (199 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       116  (0.0282789); expected 82.0 (0.02)
Passed bias filter:                      106  (0.0258411); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.10s 00:00:00.29 Elapsed: 00:00:01.87
# Mc/sec: 140.46
//
Query:       MMETSP1137-20121227|4206_1  [L=124]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (124 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        92  (0.0224281); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.12s 00:00:00.27 Elapsed: 00:00:00.27
# Mc/sec: 606.17
//
Query:       MMETSP1137-20121227|4207_1  [L=653]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (653 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        70  (0.0170648); expected 82.0 (0.02)
Passed bias filter:                       42  (0.0102389); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.14s 00:00:00.52 Elapsed: 00:00:01.04
# Mc/sec: 828.74
//
Query:       MMETSP1137-20121227|4208_1  [L=215]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (215 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        46  (0.011214); expected 82.0 (0.02)
Passed bias filter:                       39  (0.00950756); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.13s 00:00:00.31 Elapsed: 00:00:00.36
# Mc/sec: 788.27
//
Query:       MMETSP1137-20121227|4209_1  [L=791]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (791 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       289  (0.0704534); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.55u 0.14s 00:00:00.69 Elapsed: 00:00:00.60
# Mc/sec: 1740.06
//
Query:       MMETSP1137-20121227|4211_1  [L=509]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      1e-91  305.7   0.0    1.2e-91  305.4   0.0    1.1  1  TIGR01891 amidohydrolases: amidohydrolase
    2.2e-05   21.6   0.0    3.4e-05   21.0   0.0    1.2  1  TIGR01910 DapE-ArgE: peptidase, ArgE/DapE family
    0.00014   18.8   0.0     0.0002   18.3   0.0    1.1  1  TIGR01883 PepT-like: peptidase T-like protein
    0.00029   17.7   0.1     0.0004   17.2   0.0    1.1  1  TIGR01879 hydantase: amidase, hydantoinase/carbamoylase family
    0.00088   16.2   0.0     0.0013   15.7   0.0    1.1  1  TIGR01246 dapE_proteo: succinyl-diaminopimelate desuccinylase
    0.00099   16.0   0.1     0.0017   15.2   0.1    1.4  1  TIGR01892 AcOrn-deacetyl: acetylornithine deacetylase (ArgE)
     0.0014   15.4   0.1      0.002   14.9   0.0    1.2  1  TIGR01900 dapE-gram_pos: succinyl-diaminopimelate desuccinylase


Domain annotation for each model (and alignments):
>> TIGR01891  amidohydrolases: amidohydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  305.4   0.0   2.1e-94   1.2e-91       2     341 ..      31     380 ..      30     416 .. 0.89

  Alignments for each domain:
  == domain 1    score: 305.4 bits;  conditional E-value: 2.1e-94
   TIGR01891   2 tdirrklhehPElsfeEfktaekvaeaLesl.....gievergvgka..tgvvati......gqgkpgp.viAlradmDALplee.qtelpfkstnpgvmHaCGHdlhtaillgaaillkkladq.lleGtvrlifqpaEEgglsGatkmieegvlddVdavlglHvepsapagtvrlrsgtimaaadkfevtikGkg.aHaakPhlgrdaldaaaqlvtalqaivsrsiepsrkavvsvgvieaGtapNVipdkAslkgtvRaleeevlkqieerveeilegaaamygakvelrldkaalpavtndealvqllkevakevlgseevaeepevlaGseDfalvsqkvpgaqfflgvs 341
                 t +rr++h++PE +feE +t +++++ L  l     g      ++++  tg+va+i      ++gkp+  +iAlradmDAL ++e +t+lp++s+n+gv H CGHd+h+a l gaa l++  a++   + +vrl+fqpaEEg ++Ga  mie+g+ld+Vd+ +g H++p  + g + +rsg++ma   +f+++  +++ +H+++Phl++d++++aa +v+alq++vsrs++ +++avvsv+ i++G+a+NVipdk++l+gt+R l++e+ + i er++ i++g +am+gak  ++++  ++ +++n+++ ++++++ a++  g+ +v e+  + +G+eDf++++qkvpg +fflg  
  MMETSP1137-20121227|4211_1  31 TCLRRQIHANPEPGFEEKNTNKLLRKMLVMLagideG----C-ISDCagTGIVADIvgvgppSSGKPKVrSIALRADMDALRMTEgNTTLPYRSKNQGVAHMCGHDGHMASLVGAASLINRRAHSlPSNCRVRLLFQPAEEG-PGGAVPMIEAGCLDGVDECYGYHNWPPFKLGYLHVRSGPVMAHPTAFKIESSAVAvGHGSQPHLAVDPVLVAAHVVVALQSVVSRSVPSAEQAVVSVTMIHGGEATNVIPDKVTLQGTTRDLSPETYDLIVERIRAIVDGTCAMFGAKGTIEMNP-LYDVLVNHKEQTEVVQSLARRHFGEDRVKEDGLPILGAEDFSYYLQKVPGCFFFLGGN 380
                 668*************************988655542....2.333345555544422222245666545************9883556***********************************998999***********8.7**************************************************999879************************************************************************************************99.5*****************************************************9953 PP

>> TIGR01910  DapE-ArgE: peptidase, ArgE/DapE family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.0   0.0   5.9e-08   3.4e-05     189     279 ..     223     308 ..     212     371 .. 0.84

  Alignments for each domain:
  == domain 1    score: 21.0 bits;  conditional E-value: 5.9e-08
   TIGR01910 189 qaHaslpeeGvnAieklakliteleeleeeknakkdeeeplkvtinvgvikggdkvnsvpdraelevrvriiPeenkeevkkeveslvkal 279
                   H+s p++ v+ +  +a+++ +l+ ++++ +  +      +  + v++i gg+  n++pd+++l+++ r +  e+ +   + ++++v+  
  MMETSP1137-20121227|4211_1 223 VGHGSQPHLAVDPVLVAAHVVVALQSVVSRSVPSA-----EQAVVSVTMIHGGEATNVIPDKVTLQGTTRDLSPETYDLIVERIRAIVDGT 308
                 57***************************999886.....788999********************9998776667777777777777765 PP

>> TIGR01883  PepT-like: peptidase T-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.0   3.4e-07    0.0002     187     293 ..     226     338 ..     203     351 .. 0.74

  Alignments for each domain:
  == domain 1    score: 18.3 bits;  conditional E-value: 3.4e-07
   TIGR01883 187 glvpedgisaiavaakaiskmkl..gr...iDeettanigsfeGGvatnivqdelkivaearslsdekleaqvqkikeafeeaaekyGatveveteliYegfkle.eddalve 293
                 g +p   + ++ vaa+ + +++    r     e +   + +++GG atn++ d++      r ls+e  +  v +i++  + +++ +Ga+  +e++ +Y+    + e+ ++v+
  MMETSP1137-20121227|4211_1 226 GSQPHLAVDPVLVAAHVVVALQSvvSRsvpSAEQAVVSVTMIHGGEATNVIPDKVTLQGTTRDLSPETYDLIVERIRAIVDGTCAMFGAKGTIEMNPLYDVLVNHkEQTEVVQ 338
                 45566666666666665544432112211135667788999**********************************************************98765514445555 PP

>> TIGR01879  hydantase: amidase, hydantoinase/carbamoylase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.0   6.8e-07    0.0004     215     316 ..     219     321 ..     207     376 .. 0.76

  Alignments for each domain:
  == domain 1    score: 17.2 bits;  conditional E-value: 6.8e-07
   TIGR01879 215 aGeaehaGttPmslRrDalvaaakiikeveekakr...mtaptvgtvGkveaaPngvnviPekveftlDlRdldaevlskltkkleeeikaiskerdveleierl 316
                 + +a   G++P  l  D++  aa+++ + +++ +r     + +v  v  ++   +++nviP+kv+++   Rdl  e  + +++++ + +   +   + + +ie +
  MMETSP1137-20121227|4211_1 219 SAVAVGHGSQP-HLAVDPVLVAAHVVVALQSVVSRsvpSAEQAVVSVTMIHG-GEATNVIPDKVTLQGTTRDLSPETYDLIVERIRAIVDGTCAMFGAKGTIEMN 321
                 55555556777.4778999999999999999988843234556666766665.4578***********************9999999888888777766666654 PP

>> TIGR01246  dapE_proteo: succinyl-diaminopimelate desuccinylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   2.2e-06    0.0013     188     274 ..     223     307 ..     213     343 .. 0.86

  Alignments for each domain:
  == domain 1    score: 15.7 bits;  conditional E-value: 2.2e-06
   TIGR01246 188 qGhvaYPhkaenPvhkavpvlkeliaiklDeGneffppsslqianieagtgasnviPgelkvkfnlrfssevseeelkskvekildk 274
                  Gh + Ph+a +Pv  a++v+ +l ++       + +++ ++++ i++g+ a+nviP +++++   r  s  + + + +++++i+d 
  MMETSP1137-20121227|4211_1 223 VGHGSQPHLAVDPVLVAAHVVVALQSVV-SRSVPSAEQAVVSVTMIHGGE-ATNVIPDKVTLQGTTRDLSPETYDLIVERIRAIVDG 307
                 5999***************999998765.455667788999******985.79**************99999999999999999986 PP

>> TIGR01892  AcOrn-deacetyl: acetylornithine deacetylase (ArgE)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.1     3e-06    0.0017     181     300 ..     224     336 ..     206     351 .. 0.71

  Alignments for each domain:
  == domain 1    score: 15.2 bits;  conditional E-value: 3e-06
   TIGR01892 181 ghssrpdrGvsaielaakllarlvaladklkredleeaFtppyatlniGtvkGGkavniiaaaCelvlelRpipGmdpeellallekiaeevkekapgfevkveelsatpa.leleedael 300
                 gh s+p+  v+ + +aa+++     l+  + r+    +   + a + +  ++GG+a+n+i+++  l+   R ++  + + + + +++i +     + g +  +e+ +++   ++ +e++e+
  MMETSP1137-20121227|4211_1 224 GHGSQPHLAVDPVLVAAHVVVA---LQSVVSRS----VPSAEQAVVSVTMIHGGEATNVIPDKVTLQGTTRDLSPETYDLIVERIRAIVDGT-CAMFGAKGTIEMNPLYDVlVNHKEQTEV 336
                 8899999988888888877544...44444443....334567889999***********************99999998888888888754.4455555556666665541344444444 PP

>> TIGR01900  dapE-gram_pos: succinyl-diaminopimelate desuccinylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   3.3e-06     0.002     216     265 ..     260     309 ..     224     343 .. 0.81

  Alignments for each domain:
  == domain 1    score: 14.9 bits;  conditional E-value: 3.3e-06
   TIGR01900 216 eglnavlieggvakNviPdeaevnvnyRfAPdrsleqakaevrevlegae 265
                  ++++++i+gg a+NviPd+++++   R     + +   +++r++++g+ 
  MMETSP1137-20121227|4211_1 260 AVVSVTMIHGGEATNVIPDKVTLQGTTRDLSPETYDLIVERIRAIVDGTC 309
                 5799******************9988886666677777777777777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (509 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       118  (0.0287665); expected 82.0 (0.02)
Passed bias filter:                      105  (0.0255973); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.41u 0.16s 00:00:00.56 Elapsed: 00:00:00.55
# Mc/sec: 1221.50
//
Query:       MMETSP1137-20121227|4212_1  [L=500]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (500 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       216  (0.0526572); expected 82.0 (0.02)
Passed bias filter:                      104  (0.0253535); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.15s 00:00:00.51 Elapsed: 00:00:00.45
# Mc/sec: 1466.55
//
Query:       MMETSP1137-20121227|4213_1  [L=583]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (583 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        76  (0.0185275); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.18s 00:00:00.56 Elapsed: 00:00:00.65
# Mc/sec: 1183.84
//
Query:       MMETSP1137-20121227|4214_1  [L=352]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.6e-23   78.0   4.0    1.6e-11   40.9   0.0    3.6  3  TIGR00198 cat_per_HPI: catalase/peroxidase HPI


Domain annotation for each model (and alignments):
>> TIGR00198  cat_per_HPI: catalase/peroxidase HPI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.9   0.0   3.9e-15   1.6e-11      79     170 ..     105     195 ..      97     204 .. 0.93
   2 !   16.3   0.0     1e-07   0.00043     217     260 ..     210     253 ..     198     259 .. 0.81
   3 !   20.3   0.6   6.6e-09   2.7e-05     295     396 ..     253     339 ..     252     345 .. 0.91

  Alignments for each domain:
  == domain 1    score: 40.9 bits;  conditional E-value: 3.9e-15
   TIGR00198  79 yggllirlawhaagtyriidgrggaadgsqrfaplnswpdnvnldkarrllwpikkkygrklswadliilagtvaledmglkvfgfaagred 170
                  g+ l+rlawh++gty  +   gg++ g +rf    +   n  l + +  l p++ ++   +s+adl+ lag  a+e +g     + agr d
  MMETSP1137-20121227|4214_1 105 IGPTLLRLAWHSSGTYDKMSKTGGSGGGTIRFQEELAHGGNAGLSQMVTKLEPVHARFP-EVSYADLYTLAGVTAIEAAGGPSVPWRAGRVD 195
                 57899****************************************************97.69*****************9988888888877 PP

  == domain 2    score: 16.3 bits;  conditional E-value: 1e-07
   TIGR00198 217 dgspdplsaaqeirv.tfarmgmndeetvaliagghtlgkchgag 260
                  +++ p  +a+++r   f rmg++d e val +g h+lg+ch  +
  MMETSP1137-20121227|4214_1 210 ADKGRPSDTAAHLRFeVFYRMGFDDREIVAL-SGAHALGRCHPDA 253
                 467889999****96379************8.79********765 PP

  == domain 3    score: 20.3 bits;  conditional E-value: 6.6e-09
   TIGR00198 295 tsglevvwtttptkfdnnyleilfkyewelkkspagaiqfeavdakeiikdaedpnkkrkpimlvadlalrfdpefekisrrfleepeefeeafakawfklt 396
                 +sg  + wt+tp +  n+y+++l++  w lkk   g +qfe            dp+ k   +ml +d+ l++d  f+k  + + ++ + f + fa a+ kl 
  MMETSP1137-20121227|4214_1 253 ASGYSGPWTPTPLQLTNGYFNLLLSVPWTLKKW-DGPMQFE------------DPSGK--LMMLPSDIVLVQDSDFRKYVQMYAKDSKLFFNDFAAAFQKLE 339
                 589999************************985.6888885............88875..68************************************9995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (352 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        69  (0.0168211); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.29u 0.17s 00:00:00.46 Elapsed: 00:00:00.50
# Mc/sec: 929.20
//
Query:       MMETSP1137-20121227|4215_1  [L=269]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (269 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       104  (0.0253535); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.19s 00:00:00.37 Elapsed: 00:00:00.46
# Mc/sec: 771.85
//
Query:       MMETSP1137-20121227|4216_1  [L=118]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (118 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        87  (0.0212092); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.13s 00:00:00.29 Elapsed: 00:00:00.43
# Mc/sec: 362.20
//
Query:       MMETSP1137-20121227|4217_1  [L=46]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (46 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        58  (0.0141394); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.13s 00:00:00.24 Elapsed: 00:00:00.25
# Mc/sec: 242.86
//
Query:       MMETSP1137-20121227|4218_1  [L=645]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (645 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        75  (0.0182838); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.18s 00:00:00.54 Elapsed: 00:00:00.69
# Mc/sec: 1233.81
//
Query:       MMETSP1137-20121227|4219_1  [L=123]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (123 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        85  (0.0207216); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.16s 00:00:00.33 Elapsed: 00:00:00.27
# Mc/sec: 601.28
//
Query:       MMETSP1137-20121227|4220_1  [L=60]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        45  (0.0109703); expected 82.0 (0.02)
Passed bias filter:                       40  (0.00975134); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.14s 00:00:00.27 Elapsed: 00:00:00.28
# Mc/sec: 282.83
//
Query:       MMETSP1137-20121227|4221_1  [L=439]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (439 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        81  (0.0197465); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.15s 00:00:00.46 Elapsed: 00:00:00.28
# Mc/sec: 1998.04
//
Query:       MMETSP1137-20121227|4222_1  [L=295]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.022   10.2   0.2      0.028    9.8   0.1    1.0  1  TIGR03928 T7_EssCb_Firm: type VII secretion protein EssC


Domain annotation for each model (and alignments):
>> TIGR03928  T7_EssCb_Firm: type VII secretion protein EssC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.1   6.9e-06     0.028      36      98 ..     199     267 ..     188     276 .. 0.78

  Alignments for each domain:
  == domain 1    score: 9.8 bits;  conditional E-value: 6.9e-06
   TIGR03928  36 ellriilPplvmivvlv......lisilqkrgifilasiamslvtivvsvtqyikekkkykkkkekrek 98 
                 + ++ +lP+ + +v+++       +s l+ ++if+la + m+l+ +v+++t  ++++k++ +++++r+ 
  MMETSP1137-20121227|4222_1 199 RKWKQLLPATAEVVIIGagdavlATSFLMVMMIFVLARLEMVLTVAVLATTLLFRQRKNRLHTVQQRRA 267
                 5688888887777766411111145666778899999**************************999975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (295 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       223  (0.0543637); expected 82.0 (0.02)
Passed bias filter:                      151  (0.0368113); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.28u 0.15s 00:00:00.43 Elapsed: 00:00:00.40
# Mc/sec: 973.42
//
Query:       MMETSP1137-20121227|4223_1  [L=754]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        1.3    6.0  15.3        3.4    4.6  10.6    1.6  1  TIGR00601 rad23: UV excision repair protein Rad23


Domain annotation for each model (and alignments):
>> TIGR00601  rad23: UV excision repair protein Rad23
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6  10.6   0.00082       3.4      91     162 ..     568     639 ..     558     648 .. 0.82

  Alignments for each domain:
  == domain 1    score: 4.6 bits;  conditional E-value: 0.00082
   TIGR00601  91 pesaptptpsatpasvaekksaaPasaveeessaeeeatatalesedtsaesegdsdre.tlvvGsereetve 162
                 ++s p+++p   p+ ++++++++P+sa+ ++ss++ ++ +++++s+ + ++++++s+re +lv+G+  ee+ +
  MMETSP1137-20121227|4223_1 568 SKSSPSSSP-LSPSWPSSSTTSSPSSATLQSSSSPSSSPSSSPSSSPSHSTASAESHREaSLVTGAATEEAAT 639
                 688899998.677778888899999999999999988888888888777788888888878*****9998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (754 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        82  (0.0199902); expected 82.0 (0.02)
Passed bias filter:                       37  (0.00901999); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.15s 00:00:00.59 Elapsed: 00:00:00.61
# Mc/sec: 1631.47
//
Query:       MMETSP1137-20121227|4224_1  [L=346]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (346 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        52  (0.0126767); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.13s 00:00:00.37 Elapsed: 00:00:00.38
# Mc/sec: 1201.80
//
Query:       MMETSP1137-20121227|4227_1  [L=716]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (716 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       141  (0.0343735); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.48u 0.15s 00:00:00.63 Elapsed: 00:00:00.56
# Mc/sec: 1657.97
//
Query:       MMETSP1137-20121227|4228_1  [L=97]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (97 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        55  (0.0134081); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.11s 00:00:00.25 Elapsed: 00:00:00.46
# Mc/sec: 278.32
//
Query:       MMETSP1137-20121227|4229_1  [L=371]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.7e-06   24.1   0.0     0.0013   16.1   0.0    2.3  3  TIGR00633 xth: exodeoxyribonuclease III (xth)
    1.5e-05   22.6   0.0      0.051   11.0   0.0    2.2  2  TIGR00195 exoDNase_III: exodeoxyribonuclease III


Domain annotation for each model (and alignments):
>> TIGR00633  xth: exodeoxyribonuclease III (xth)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0   6.5e-07    0.0013      13      75 ..     122     186 ..     119     208 .. 0.82
   2 !    5.5   0.0    0.0011       2.2     123     156 ..     259     292 ..     238     312 .. 0.83
   3 ?   -3.7   0.0      0.69   1.4e+03     243     253 ..     356     366 ..     348     367 .. 0.71

  Alignments for each domain:
  == domain 1    score: 16.1 bits;  conditional E-value: 6.5e-07
   TIGR00633  13 arlkklflellkeekpDvlclQEtKvaeeqlp...kelleeegYevafssakkkgysGvallskee 75 
                 ar + + +e++  +++Dv++lQE  +a+ ++    +e  +++gY++++s  ++++  G ++l +++
  MMETSP1137-20121227|4229_1 122 ARVHAQ-IETVGDADADVVALQEFWCANPKNVdmwQEFAAKHGYTMFISRRTNSKADGCCVLIRQA 186
                 677777.99*****************9854431114455899**********99*******99975 PP

  == domain 2    score: 5.5 bits;  conditional E-value: 0.0011
   TIGR00633 123 klefweallaklekeldkekpvvlcGDlNvahee 156
                 +l++  +l + + + ++++ p ++cGDlN  h +
  MMETSP1137-20121227|4229_1 259 RLHQARKLAECVRRVRAAGTPAIVCGDLNGDHDD 292
                 5655666667777777889**********88877 PP

  == domain 3    score: -3.7 bits;  conditional E-value: 0.69
   TIGR00633 243 rgSDHaPvvle 253
                   SDH P+ ++
  MMETSP1137-20121227|4229_1 356 SLSDHRPLHIT 366
                 339****9876 PP

>> TIGR00195  exoDNase_III: exodeoxyribonuclease III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.0   0.0   2.5e-05     0.051      13      71 ..     122     185 ..     119     198 .. 0.77
   2 !    9.3   0.0     8e-05      0.16     120     154 ..     259     293 ..     247     325 .. 0.86

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 2.5e-05
   TIGR00195  13 arlkklleflkeekpDvlclqEtkvadeq...fpkelvekegYhvffsga..kgysGvailske 71 
                 ar +  +e + + ++Dv++lqE   a+ +   + +e+ +k+gY +f+s        G ++l ++
  MMETSP1137-20121227|4229_1 122 ARVHAQIETVGDADADVVALQEFWCANPKnvdMWQEFAAKHGYTMFISRRtnSKADGCCVLIRQ 185
                 78899999**************988765411145788899*******98765344677766554 PP

  == domain 2    score: 9.3 bits;  conditional E-value: 8e-05
   TIGR00195 120 klqfleelqkyleklekkdkpvlicGDlniapeei 154
                 +l+  ++l + +++ +  ++p+++cGDln  +++ 
  MMETSP1137-20121227|4229_1 259 RLHQARKLAECVRRVRAAGTPAIVCGDLNGDHDDP 293
                 6667789999*******************999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (371 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        64  (0.0156021); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.27u 0.13s 00:00:00.40 Elapsed: 00:00:00.49
# Mc/sec: 999.35
//
Query:       MMETSP1137-20121227|4230_1  [L=43]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (43 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        96  (0.0234032); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.15s 00:00:00.26 Elapsed: 00:00:00.30
# Mc/sec: 189.18
//
Query:       MMETSP1137-20121227|4231_1  [L=315]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.9e-50  169.6   0.0    2.3e-50  169.4   0.0    1.1  1  TIGR00419 tim: triose-phosphate isomerase


Domain annotation for each model (and alignments):
>> TIGR00419  tim: triose-phosphate isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  169.4   0.0   5.6e-54   2.3e-50       3     227 ..      60     297 ..      58     298 .. 0.91

  Alignments for each domain:
  == domain 1    score: 169.4 bits;  conditional E-value: 5.6e-54
   TIGR00419   3 iinfKlnesvgkvelevaklaeevas.eagvevavappfvdldvvkdeveseiqvaAqnvdavks.GaftGeisAemlkdlGakgvligHsErRsllkeadeliekkvarlkelglksvvCvgetleereaartinnvattaaaaA.........lepdvvAvEPveliGtGk.pvskAeaevveksvrdhlkk.vskevaesvrvlyGasvtaaedaelaaqldvdGvLlasavlka 227
                  +n+K+ +s+ +   +v +l+   ++ +++vev++ p++++ld v++ +++   v+Aqn++ v + G +tG ++A ml+d+ + +vl+gHs+rR +l e+++li+ k a + + g+++ + vget+e+r +++++ ++  + a +          ++  v+A+EPv++iG G  p ++ +a++v++ +r+++++ vs+  a   r++y +sv++++++  + q d+dG++ + a+l a
  MMETSP1137-20121227|4231_1  60 XGNWKCAGSRASIVALVEELNGIASQiPSDVEVVIFPSMLHLDLVSRTLHPPFVVGAQNCWDVGPlGDYTGCVTARMLADYRVSWVLLGHSDRRNMLGESSKLIADKCAAALKEGMNVNLTVGETEEQRASGEHLAALEAQMAPVVqalagdadgWQRIVLAYEPVWAIGNGAtPCTPMQAQEVHSHLREFVRTqVSEGAASGLRIVYTGSVSTSNCTSFVGQADIDGFVCGRASLVA 297
                 69**********999999998833333699******************************988754****************************************************************8888877777765443445578899*****************5389*****************98999999*********************************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (315 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        92  (0.0224281); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.25u 0.15s 00:00:00.40 Elapsed: 00:00:00.45
# Mc/sec: 923.92
//
Query:       MMETSP1137-20121227|4232_1  [L=67]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (67 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        28  (0.00682594); expected 82.0 (0.02)
Passed bias filter:                       25  (0.00609459); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.15s 00:00:00.28 Elapsed: 00:00:00.26
# Mc/sec: 340.13
//
Query:       MMETSP1137-20121227|4233_1  [L=588]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (588 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        67  (0.0163335); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.17s 00:00:00.55 Elapsed: 00:00:00.45
# Mc/sec: 1724.66
//
Query:       MMETSP1137-20121227|4234_1  [L=186]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (186 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        73  (0.0177962); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.18s 00:00:00.35 Elapsed: 00:00:00.33
# Mc/sec: 743.94
//
Query:       MMETSP1137-20121227|4235_1  [L=274]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (274 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        45  (0.0109703); expected 82.0 (0.02)
Passed bias filter:                       38  (0.00926377); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.16s 00:00:00.39 Elapsed: 00:00:00.26
# Mc/sec: 1390.96
//
Query:       MMETSP1137-20121227|4237_1  [L=500]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     9e-175  580.0   4.5     1e-174  579.8   3.1    1.0  1  TIGR01421 gluta_reduc_1: glutathione-disulfide reductase
     5e-133  441.7   6.4   5.8e-133  441.5   4.5    1.0  1  TIGR01424 gluta_reduc_2: glutathione-disulfide reductase
   3.2e-112  373.7   1.0   4.1e-112  373.3   0.7    1.0  1  TIGR01438 TGR: thioredoxin and glutathione reductase
    4.6e-94  313.5   5.9    5.7e-94  313.2   4.1    1.0  1  TIGR01350 lipoamide_DH: dihydrolipoyl dehydrogenase
    1.6e-88  295.6   7.1      2e-88  295.3   4.9    1.0  1  TIGR02053 MerA: mercuric reductase
    2.8e-83  277.9   4.9    3.9e-83  277.4   3.4    1.1  1  TIGR01423 trypano_reduc: trypanothione-disulfide reductase
    1.7e-69  232.7   4.1      2e-69  232.4   2.9    1.0  1  TIGR03452 mycothione_red: mycothione reductase
    3.6e-20   70.0   0.7    3.6e-20   70.0   0.5    2.6  3  TIGR03385 CoA_CoA_reduc: CoA-disulfide reductase
    6.3e-15   52.6   6.5    4.3e-12   43.3   0.8    3.1  2  TIGR01292 TRX_reduct: thioredoxin-disulfide reductase
    1.1e-12   45.7   3.3    1.6e-11   41.9   0.3    2.8  3  TIGR03169 Nterm_to_SelD: pyridine nucleotide-disulfide oxidoreductase family protein
    3.1e-11   40.3   1.2    6.5e-11   39.2   0.8    1.5  1  TIGR02374 nitri_red_nirB: nitrite reductase [NAD(P)H], large subunit
    1.3e-10   38.4   0.7    8.7e-10   35.7   0.5    2.0  1  TIGR04018 Bthiol_YpdA: putative bacillithiol system oxidoreductase, YpdA family
    1.2e-08   32.1  11.3    1.3e-07   28.6   0.5    3.0  2  TIGR01316 gltA: glutamate synthase (NADPH), homotetrameric
    1.2e-08   31.8   8.1    2.6e-05   20.8   1.4    2.2  2  TIGR03140 AhpF: alkyl hydroperoxide reductase, F subunit
    1.9e-08   31.2   5.2    2.7e-06   24.0   0.9    2.6  2  TIGR03143 AhpF_homolog: putative alkyl hydroperoxide reductase F subunit
    8.2e-06   22.5   4.2     0.0014   15.1   0.2    3.1  3  TIGR01318 gltD_gamma_fam: glutamate synthase, small subunit
    8.6e-06   22.6   6.9       0.07    9.7   1.6    3.1  3  TIGR00275 TIGR00275: flavoprotein, HI0933 family
      2e-05   21.0   2.7    5.7e-05   19.5   0.4    2.1  2  TIGR03997 mycofact_OYE_2: mycofactocin system FadH/OYE family oxidoreductase 2
    9.9e-05   19.2   6.2     0.0023   14.7   0.1    3.1  3  TIGR01317 GOGAT_sm_gam: glutamate synthase, NADH/NADPH, small subunit
    0.00011   19.9   0.4    0.00024   18.7   0.3    1.6  1  TIGR02032 GG-red-SF: geranylgeranyl reductase family
    0.00081   16.5   0.8     0.0026   14.9   0.6    1.8  1  TIGR00292 TIGR00292: thiazole biosynthesis enzyme
     0.0011   15.8   0.2     0.0021   14.9   0.1    1.4  1  TIGR00031 UDP-GALP_mutase: UDP-galactopyranose mutase
     0.0015   14.9  12.1     0.0059   13.0   1.1    2.4  2  TIGR03996 mycofact_OYE_1: mycofactocin system FadH/OYE family oxidoreductase 1
     0.0031   12.8   5.8      0.033    9.4   4.0    2.2  1  TIGR03315 Se_ygfK: putative selenate reductase, YgfK subunit
     0.0061   13.7   5.1      0.013   12.6   3.5    1.5  1  TIGR03467 HpnE: squalene-associated FAD-dependent desaturase
     0.0075   11.9   5.7     0.0023   13.5   1.9    1.5  2  TIGR01372 soxA: sarcosine oxidase, alpha subunit family
  ------ inclusion threshold ------
      0.011   12.4   0.3      0.027   11.1   0.1    1.7  2  TIGR02730 carot_isom: carotene isomerase
      0.011   12.2   2.8      0.018   11.5   2.0    1.3  1  TIGR02734 crtI_fam: phytoene desaturase
      0.014   12.3   0.8      0.027   11.3   0.2    1.7  2  TIGR03378 glycerol3P_GlpB: glycerol-3-phosphate dehydrogenase, anaerobic, B subunit
       0.14    9.0   6.1      0.011   12.6   0.8    1.6  2  TIGR03364 HpnW_proposed: FAD dependent oxidoreductase TIGR03364
       0.33    8.0   6.2      0.094    9.8   0.1    2.5  3  TIGR02853 spore_dpaA: dipicolinic acid synthetase, A subunit
       0.97    6.3   7.0        1.4    5.7   1.4    2.6  3  TIGR02352 thiamin_ThiO: glycine oxidase ThiO


Domain annotation for each model (and alignments):
>> TIGR01421  gluta_reduc_1: glutathione-disulfide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  579.8   3.1    8e-177    1e-174       2     449 ..      43     490 ..      42     491 .. 0.95

  Alignments for each domain:
  == domain 1    score: 579.8 bits;  conditional E-value: 8e-177
   TIGR01421   2 eydylviGGGsGGiasarraaeyGakallveekklGGtcvnvGcvPkkvmwyaaslaelledaadyGfksekenkfnfkelkekrdayvdrlngiyqknlekekvelieGyaeftkdetvevngkeytakhiliatGgkpsipeniPGaelgldsdgffaleelPkrvvivGaGyiavelaGvlhglGsktdlvirrervlrsfdelisekvveelekaglevhklskvvkvektvegklvitledgkeiedvdeliwaiGrkpntkdlglekvgvkldekgyikvdeyqntnvegiyalGdvvGkveltPvaiaaGrklserlfegk..edakldyenvPtvvfshPeigtvGltekeaiekyGkenvkvykssftamyya....l.tkekqksrlklvcagkeekvvGlhiiGlgvdellqGfavaikmGatkadfdntvaihPtsseelvtl 449
                 e+dylviGGGsGGiasarraa++Gaka+++e  +lGGtcvnvGcvPkkvm++aas++e++++aa+yG+++e+  k++f++lk+krdayv+rlngiy +nl++++v  ieG a+f++ + v+v++k+ytak ilia Gg+p +     Gael+++sdgff+le++P rv++vG+GyiavelaG+l+ lGsk dl+ir+e++lrs++  + + +v e+e+ag+++ +     k+  + +g  + + +dg +  + de+++a+Gr p t+ l+l  +g+++ ekg+ikvd+   t+ +g+ya+Gdv+Gkv+ltPvaiaaGr l++rl+ g     +k+dy n+PtvvfshP+++ vGltek+ai+k+G++ v ++ks f  m y+    + ++ + k+  klvc+g+e++vvGlh+iGl+vde+lqGf+vaikmGatkadfd++vaihPts+eelvt+
  MMETSP1137-20121227|4237_1  43 EFDYLVIGGGSGGIASARRAASHGAKAAVIERARLGGTCVNVGCVPKKVMFNAASVMEIIHQAAGYGLSVENM-KLDFPVLKQKRDAYVSRLNGIYRNNLKNSDVTFIEGDASFVGPKMVSVDDKTYTAKNILIAVGGTPAVE----GAELAINSDGFFELEQVPSRVAVVGSGYIAVELAGILNVLGSKVDLMIRGETPLRSMEADVIKMLVTEMEEAGINIVRGDS-SKITAS-DGGKTLHTKDGATHGEYDEILFATGRTPVTESLQLSSAGIEVTEKGHIKVDDASRTTADGVYAVGDVIGKVDLTPVAIAAGRLLADRLYAGVpeSATKMDYGNIPTVVFSHPPLAVVGLTEKDAIDKFGEDAVTIHKSTFVNMLYSreflVeGQFQPKTFAKLVCVGDEQRVVGLHMIGLAVDEILQGFSVAIKMGATKADFDSVVAIHPTSAEELVTI 490
                 79********************************************************************955.5****************************************************************9988....****************************************************************************98765.677654.556899***********************************************************************************97543889**********************************************876332221455678999********************************************************97 PP

>> TIGR01424  gluta_reduc_2: glutathione-disulfide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  441.5   4.5  4.5e-135  5.8e-133       2     445 ..      43     490 ..      42     491 .. 0.94

  Alignments for each domain:
  == domain 1    score: 441.5 bits;  conditional E-value: 4.5e-135
   TIGR01424   2 dydlfviGaGsGGvraarlaaalGakvaiaeedlvGGtcvirGcvPkkllvyasefaeeledakgyGwevekaefdwkkllakkdkeiarlsglykkllakagvellegraelvdantvevledgktytaekiliavGgrpvkpelPGaelaitsdeafdletlPksilvvGgGyiavefagifrGlGvkvtllyrgekilrgfdddvraelaeeleerGirillktvlksiekvddGlkvtlskd.eeivadvvllatGrvPnvkglgleaaGvelndagaiavdeysrtsvpsiyavGdvtdrinltPvaikeaaafaetefknnp...tkadhdlvatavfsqPevatvGlseeearekftdd.ievyraefrPmkat....lsGr.qekillklvvdekddkvlGahvvGedaaeiiqlvaialkaGatkkdfdstvavhPssaeelvtm 445
                 ++d +viG+GsGG+++ar+aa++Gak a+ e+ ++GGtcv  GcvPkk++  a+++ e +++a+gyG  ve+ ++d+  l +k+d  + rl+g+y+++l+++ v ++eg a  v+++ v v +  ktyta++iliavGg p   ++ Gaelai sd  f+le++P +++vvG+Gyiave+agi++ lG+kv+l++rge++lr ++ dv + l +e+ee Gi+i+  ++  +i++ d G    + ++  + + d +l+atGr+P ++ l+l +aG+e+ ++g i+vd+ srt+ +++yavGdv  +++ltPvai  ++ +a+  + + p   tk+d+ ++ t vfs+P++a+vGl+e++a +kf++d +++++++f  m  +    + G+ q k++ klv   ++++v+G h++G    ei+q+ ++a+k+Gatk+dfds va+hP+saeelvt+
  MMETSP1137-20121227|4237_1  43 EFDYLVIGGGSGGIASARRAASHGAKAAVIERARLGGTCVNVGCVPKKVMFNAASVMEIIHQAAGYGLSVENMKLDFPVLKQKRDAYVSRLNGIYRNNLKNSDVTFIEGDASFVGPKMVSVDD--KTYTAKNILIAVGGTP---AVEGAELAINSDGFFELEQVPSRVAVVGSGYIAVELAGILNVLGSKVDLMIRGETPLRSMEADVIKMLVTEMEEAGINIVRGDSS-KITASDGGKTLHTKDGaTHGEYDEILFATGRTPVTESLQLSSAGIEVTEKGHIKVDDASRTTADGVYAVGDVIGKVDLTPVAIAAGRLLADRLYAGVPesaTKMDYGNIPTVVFSHPPLAVVGLTEKDAIDKFGEDaVTIHKSTFVNMLYSreflVEGQfQPKTFAKLVCVGDEQRVVGLHMIGLAVDEILQGFSVAIKMGATKADFDSVVAIHPTSAEELVTI 490
                 69**********************************************************************************************************************988..**************75...789*****************************************************************************99986.5899999976666655155688************************************************************************9876333789*****************************9883567799***9976544335676688************************************************************96 PP

>> TIGR01438  TGR: thioredoxin and glutathione reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  373.3   0.7  3.2e-114  4.1e-112       2     468 ..      43     490 ..      42     492 .. 0.94

  Alignments for each domain:
  == domain 1    score: 373.3 bits;  conditional E-value: 3.2e-114
   TIGR01438   2 dydliviGgGsGGlaaakeaaklgakvllldfvkptpqGtkwGiGGtcvnvGcipkklmhqaallGkalkdskkyGwnveeqvkhdweklskavqdrikslnfsyrvalrekkvkyinayaelvdkdvikatdkkkkeeilsakrvliatGlrpkypddieGakelsitsddlfslkkvpGktlvvGasyvalecaGflaalgldvtvlvrs.illrGfdqdcavkvkeylkeqGvkfkeqvlpkkvekveakvlvkftdkdntieeeydtvlyaiGrkadlkklnlenvgvkvnkksgkiladelertnvpsiyavGdivedkleltpvaikaGklladrlfk...dskeivdyenvpttvftpleygavGlseekavekyGeenvevfhseftpleys...vpsrkdsskcyakvvclkdedervvGlhfvGpnagevtqGfavalrvgvkkkdldntigihpvsaeefvkl 468
                 ++d++viGgGsGG+a+a++aa++gak ++++            +GGtcvnvGc+pkk+m +aa + ++++++  yG  ve+ +k d+ +l ++ +  +  ln +yr +l+++ v++i++ a +v++++++  d     ++++ak++lia G  p     +eGa el+i sd +f l++vp +  vvG++y+a+e aG l+ lg +v++++r   +lr ++ d+++++   ++e G+++ ++    k+++ +  +  +    d ++++eyd +l+a Gr++ +++l+l ++g++v +k g i +d+ +rt+ +++yavGd++ +k +ltpvai aG+lladrl+    +s +++dy n+pt vf+   ++ vGl+e++a++k+Ge++v +++s f ++ ys   +++ + + k +ak+vc  d ++rvvGlh++G    e++qGf+va+++g +k d+d++++ihp+saee+v++
  MMETSP1137-20121227|4237_1  43 EFDYLVIGGGSGGIASARRAASHGAKAAVIER---------ARLGGTCVNVGCVPKKVMFNAASVMEIIHQAAGYGLSVEN-MKLDFPVLKQKRDAYVSRLNGIYRNNLKNSDVTFIEGDASFVGPKMVSVDD-----KTYTAKNILIAVGGTPA----VEGA-ELAINSDGFFELEQVPSRVAVVGSGYIAVELAGILNVLGSKVDLMIRGeTPLRSMEADVIKMLVTEMEEAGINIVRG-DSSKITASDGGKTLHTK--DGATHGEYDEILFATGRTPVTESLQLSSAGIEVTEK-GHIKVDDASRTTADGVYAVGDVI-GKVDLTPVAIAAGRLLADRLYAgvpESATKMDYGNIPTVVFSHPPLAVVGLTEKDAIDKFGEDAVTIHKSTFVNMLYSrefLVEGQFQPKTFAKLVCVGD-EQRVVGLHMIGLAVDEILQGFSVAIKMGATKADFDSVVAIHPTSAEELVTI 490
                 79***************************975.........469************************************9.***********************************************9865.....689**********9995....6699.***********************************************6479***********************998.56789998887777666..45689****************************986.89*******************99.6789*****************84446999**********************************************99744457777789********975.68*********************************************9975 PP

>> TIGR01350  lipoamide_DH: dihydrolipoyl dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  313.2   4.1   4.4e-96   5.7e-94       1     447 [.      43     487 ..      43     491 .. 0.92

  Alignments for each domain:
  == domain 1    score: 313.2 bits;  conditional E-value: 4.4e-96
   TIGR01350   1 eydvvviGgGpgGYvaAiraaqlglkvalvekeklGGtClnvGCiPtKalLksaevveelkeakelgievenvkldlekllerkekvvkklvgGvkaLlkknkvevikGeaklldkkevevkkekkekkleakniiiAtGseprelplkleedekvvitseealelkevpeslvivGgGviGvEfasifaklGvkvtvielldrilpaldaevskvlkkklkkkgvkiltnakvtevekeedevvveakkkevetleaekvLvavGrkpnleelgleklgveldergaikvdeelrtnvpgiyaiGDvigklmLAhvAskegvvaaekia.gkeks..eidykavPsviytePevasvGlteeqakeeg..ievkvgkfpf..aangkalalee...tdGfvkvivdkktgeilGahivgaeaseliselalaveleltveelaktihpHPtlsEai 447
                 e+d +viGgG gG  +A raa +g k a++e+ +lGGtC+nvGC+P K + ++a v+e +++a+ +g++ven+kld+  l++++++ v++l+g  +  lk+ +v+ i+G a+++++k v+v++++    ++akni+iA G +p+          ++ i+s++ +el++vp+++++vG+G+i vE+a i++ lG+kv ++   ++ l  ++a+v k+l  ++++ g++i+ + + + +++++   ++++k++ ++  e++++L a Gr+p +e l+l + g+e++e+g ikvd+  rt+++g+ya+GDvigk+ L  vA + g + a+++  g  +s  ++dy  +P+v++++P +a+vGlte++a ++    +v + k  f  +  ++   +e     + f+k+++  + ++++G+h++g ++ e+++ +++a+++++t  +  +++  HPt +E +
  MMETSP1137-20121227|4237_1  43 EFDYLVIGGGSGGIASARRAASHGAKAAVIERARLGGTCVNVGCVPKKVMFNAASVMEIIHQAAGYGLSVENMKLDFPVLKQKRDAYVSRLNGIYRNNLKNSDVTFIEGDASFVGPKMVSVDDKT----YTAKNILIAVGGTPAVEGA------ELAINSDGFFELEQVPSRVAVVGSGYIAVELAGILNVLGSKVDLMIRGETPLRSMEADVIKMLVTEMEEAGINIVRGDSSK-ITASDGGKTLHTKDG-ATHGEYDEILFATGRTPVTESLQLSSAGIEVTEKGHIKVDDASRTTADGVYAVGDVIGKVDLTPVAIAAGRLLADRLYaGVPESatKMDYGNIPTVVFSHPPLAVVGLTEKDAIDKFgeDAVTIHKSTFvnMLYSREFLVEGqfqPKTFAKLVCVGDEQRVVGLHMIGLAVDEILQGFSVAIKMGATKADFDSVVAIHPTSAEEL 487
                 589****************************************************************************************9988999************************998....57***********975433......4679************************************************************************99887.777777777777777.6899***********************************************************************99735444478**************************97664333455555555115567766655323379*****************************************************99965 PP

>> TIGR02053  MerA: mercuric reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  295.3   4.9   1.5e-90     2e-88       1     446 [.      44     487 ..      44     489 .. 0.89

  Alignments for each domain:
  == domain 1    score: 295.3 bits;  conditional E-value: 1.5e-90
   TIGR02053   1 ydlviiGsGaaafaaaikaaelgakvvlverGilGGtCvnvGCvPSKallraaevaklakkas.vgllaaevevdleelleqkkevveelRkeKYedvlesydavdllegkakfkdektvkvdlgkevvgakrvliAtGarpavPeipGLkeaeyltseelleldkipeslvviGggaiavElaqlfarlGsevtllqrserllkeeepeisaaveellaeeGvevvksakvkavskrnggkklvtvekndskkeveadellvAtGRkpnvdgLnLekvgvklderGeilvdeklrtsnpkiyAAGDvikglqlesvAakeGvvaAenalgg...aeakldlevlPkvvFtdPevAsvGlteeelakagievesrtvkleav....pra.li..nretrGliKlvaeketkkvlgvqvvaeeAaevineaalaikagltvddlidtlhvfltmaEgl 446
                 +d+++iG+G++++a+a +aa  gak +++er  lGGtCvnvGCvP K++ +aa+v + +++a  +gl+ +++++d+  l ++++  v    +  Y + l++ d v ++eg a f+++k+v+vd+  ++ +ak++liA+G     P+++G +   +++s+ ++el+++p++++v+G+g+iavEla +++ lGs+v l+ r e+ l + e ++ +++   ++e G+++v+    +++  ++ggk+   ++++d+ ++ e de+l AtGR+p++++L+L+ +g+++ e+G+i vd+ +rt++ ++yA GDvi++++l  vA ++G + A+    g   + +k+d+  +P+vvF +P +A vGlte++++ +  e ++   k + v    +r+ l+  +++ + + Klv   + ++v+g ++++   +e+++ +++aik+g+t  d    +++++t aE l
  MMETSP1137-20121227|4237_1  44 FDYLVIGGGSGGIASARRAASHGAKAAVIERARLGGTCVNVGCVPKKVMFNAASVMEIIHQAAgYGLSVENMKLDFPVLKQKRDAYVSR-LNGIYRNNLKNSD-VTFIEGDASFVGPKMVSVDD--KTYTAKNILIAVGGT---PAVEGAEL--AINSDGFFELEQVPSRVAVVGSGYIAVELAGILNVLGSKVDLMIRGETPLRSMEADVIKMLVTEMEEAGINIVRGD-SSKITASDGGKT---LHTKDGATHGEYDEILFATGRTPVTESLQLSSAGIEVTEKGHIKVDDASRTTADGVYAVGDVIGKVDLTPVAIAAGRLLADRLYAGvpeSATKMDYGNIPTVVFSHPPLAVVGLTEKDAIDKFGEDAVTIHKSTFVnmlySREfLVegQFQPKTFAKLVCVGDEQRVVGLHMIGLAVDEILQGFSVAIKMGATKADFDSVVAIHPTSAEEL 487
                 589********************************************************999989999999999997655555555555.5789********8.*******************4..5555666******86...67888543..699**********************************************************************988.678888787776...7777889999**********************************************************************988654222789***************************9986654444434333311123441442246799*******************************************************976 PP

>> TIGR01423  trypano_reduc: trypanothione-disulfide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  277.4   3.4     3e-85   3.9e-83       3     470 ..      43     490 ..      41     498 .. 0.91

  Alignments for each domain:
  == domain 1    score: 277.4 bits;  conditional E-value: 3e-85
   TIGR01423   3 aydlvvigagsggleagwnaaslykkrvavvdlqkvhgppfyaalggtcvnvgcvpkklmvtgaqymdtlresagfgweldaesvkanwkaliaaknkavldindsyedmfkdteglefflgfgaledknvvlvresadpkskvkerldaeyillatgswpqmlkiegielcissneafyleeapkrvltvgggyisvefagifnaykavggkvdlayrndmilrgfdselrkeltkqlvangidvrtnenpakveknadgskhvvfesgke.ldvdvvmlaigrlprsqtlqldkvgveladkgaikvdeysktnvdniyaigdvtdrvmltpvainegaavvdtvfaskpr...ktdhtkvasavfsippigvcglveeeaakky..ekvavyessftplmhn....isgskykkfvvkivtdhadgevlgvhllgdsspeiiqavaiclklnakisdfyntigvhptsaeelcsm 470
                  +d +vig gsgg+ +   aas +  + av++          a lggtcvnvgcvpkk+m   a  m+ + ++ag+g     e++k ++  l   +++ v+ +n  y + +k+++ ++f  g  ++   ++v v +         ++  a+ il+a g  p    +eg el+i+s+  f le+ p rv +vg gyi+ve+agi+n     g kvdl  r+++ lr ++ ++ k l  ++   gi++    + +k++  +dg k +  + g++  ++d +++a gr p ++ lql  +g+e+++kg ikvd+ s+t  d +ya+gdv ++v ltpvai  g  + d ++a  p    k d+ ++ + vfs pp+ v+gl+e++a  k+  + v++++s+f  +++     + g    k  +k+v    +  v+g+h++g +  ei+q  ++++k++a  +df   + +hptsaeel+++
  MMETSP1137-20121227|4237_1  43 EFDYLVIGGGSGGIASARRAAS-HGAKAAVIER---------ARLGGTCVNVGCVPKKVMFNAASVMEIIHQAAGYGLS--VENMKLDFPVLKQKRDAYVSRLNGIYRNNLKNSD-VTFIEGDASFVGPKMVSVDD---------KTYTAKNILIAVGGTPA---VEGAELAINSDGFFELEQVPSRVAVVGSGYIAVELAGILNV---LGSKVDLMIRGETPLRSMEADVIKMLVTEMEEAGINIVR-GDSSKITA-SDGGKTLHTKDGAThGEYDEILFATGRTPVTESLQLSSAGIEVTEKGHIKVDDASRTTADGVYAVGDVIGKVDLTPVAIAAGRLLADRLYAGVPEsatKMDYGNIPTVVFSHPPLAVVGLTEKDAIDKFgeDAVTIHKSTFVNMLYSreflVEGQFQPKTFAKLVCVGDEQRVVGLHMIGLAVDEILQGFSVAIKMGATKADFDSVVAIHPTSAEELVTI 490
                 59************99999887.6777899974.........78*******************************9965..578999************************9976.89****99999999987754.........4678999*******995...8**************************************97...699*********************************976.5689*996.67777777777766269**************************************************************************99863226799***************************55568889******99764444789888999*********************************************************875 PP

>> TIGR03452  mycothione_red: mycothione reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  232.4   2.9   1.6e-71     2e-69       2     442 ..      43     484 ..      42     489 .. 0.87

  Alignments for each domain:
  == domain 1    score: 232.4 bits;  conditional E-value: 1.6e-71
   TIGR03452   2 hydliiiGtGsGnsilderf..edkriaivekGtfGGtclnvGciptkmfvyaaevakevkesarlgidaeidsvrwpdivsrvfedridpiaasGeeyrrgdktpnidvyesharfvgrktlrtedgeeitadqvviaaGsrpvipeaiaesgvryytnedimrlpelpeslvivGgGyialefahvfsalGtkvtlvarsekllrkldediserf.telakkkfdvrlgrnvtaaeqdddgvtlelddGstv.eadvllvatGrvpngdlldaeaaGvevdedgrvkvdeyqrtsaegvfalGdvsspyqlkhvanaearvvkhnllkd..edlkkadhdfvpaavftdpqiatvGlteqeareaGld..itvkvqdygdvayG..wamedt...eglakliadkdtGkllGahiiGaqassliqqlitalafgldarelarkqywihpalp 442
                 ++d ++iG GsG      r   +  + a++e+  +GGtc+nvGc+p k+   aa v + ++++a +g++ e  ++++p + ++    r   +++    yr++ k  +++  e  a+fvg+k+++++d +++ta++++ia G+ p+++ a  +       ++    l+++p ++ +vG+Gyia+e+a +++ lG+kv l++r+e+ lr +++d+ + + te+ +  +++ +g + ++ + +d g tl++ dG+t  e d +l atGr+p ++ l++++aG+ev+e+g++kvd+  rt+a+gv+a+Gdv  +  l  va a  r +++ l     e+ +k+d+ ++p+ vf++p +a+vGlte++a ++  +  +t+    + ++ y   + +e +   +++akl++  d  +++G h+iG     ++q +  a+ +g + +++ +    ihp+ +
  MMETSP1137-20121227|4237_1  43 EFDYLVIGGGSGGIASARRAasHGAKAAVIERARLGGTCVNVGCVPKKVMFNAASVMEIIHQAAGYGLSVENMKLDFPVLKQK----RDAYVSRLNGIYRNNLKNSDVTFIEGDASFVGPKMVSVDD-KTYTAKNILIAVGGTPAVEGAELA-----INSDGFFELEQVPSRVAVVGSGYIAVELAGILNVLGSKVDLMIRGETPLRSMEADVIKMLvTEMEEAGINIVRGDS-SKITASDGGKTLHTKDGATHgEYDEILFATGRTPVTESLQLSSAGIEVTEKGHIKVDDASRTTADGVYAVGDVIGKVDLTPVAIAAGRLLADRLYAGvpESATKMDYGNIPTVVFSHPPLAVVGLTEKDAIDKFGEdaVTIHKSTFVNMLYSreFLVEGQfqpKTFAKLVCVGDEQRVVGLHMIGLAVDEILQGFSVAIKMGATKADFDS-VVAIHPTSA 484
                 79**********866655551156799********************************************999999977654....55578888899**************************987.679*************99887655.....56899**************************************************998762677777777766654.445556677999999998763789**********************************************************************87555*******************************99855402555556677777762245564433379*************************************99999865.456777655 PP

>> TIGR03385  CoA_CoA_reduc: CoA-disulfide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.4         2   2.5e+02       3      18 ..      47      62 ..      45      76 .. 0.71
   2 ?    2.3   0.0     0.097        12     163     263 ..     100     196 ..      96     202 .. 0.71
   3 !   70.0   0.5   2.8e-22   3.6e-20     149     418 ..     202     474 ..     195     484 .. 0.81

  Alignments for each domain:
  == domain 1    score: -2.0 bits;  conditional E-value: 2
   TIGR03385  3 vivGgvaaGasaAsrv 18
                +++Gg+++G++ A r+
  MMETSP1137-20121227|4237_1 47 LVIGGGSGGIASARRA 62
                5888888888877665 PP

  == domain 2    score: 2.3 bits;  conditional E-value: 0.097
   TIGR03385 163 emvealkergkevtliersekilnkllDe...eiakiveeelekkeielrlneevksvegeekvevltsgkvyqaDlvilavGvkPnselikssqlklgkkGai 263
                 e++  +   g+ v  ++++  +l++  D+    ++ i  ++l++ +++  + e   s  g ++v    + k+y a  +++avG  P +   + ++l++++ G+ 
  MMETSP1137-20121227|4237_1 100 EIIHQAAGYGLSVENMKLDFPVLKQKRDAyvsRLNGIYRNNLKNSDVT--FIEGDASFVGPKMV--SVDDKTYTAKNILIAVGGTPAV---EGAELAINSDGFF 196
                 556666666777777777777777777751214566788888888665..55677788898885..5688899999********9986...5666788888775 PP

  == domain 3    score: 70.0 bits;  conditional E-value: 2.8e-22
   TIGR03385 149 vekvvviGgGyiglemvealkergkevtliersekilnkllDeeiakiveeelekkeielrlnee..vksvegeekvevltsgkvy.qaDlvilavGvkPnsel..ikssqlklgkkGaikvnekfqtsveniyaiGDvaesknivtkkeelvPlAwaanklgsivaeni.aGk.diefkGvlGtsivkfldl.tiaktGltenelkklnidyktvevkakakanY.YPg........akdlllklivekdtkkilgaqavGkegvlkRidvlaaaikakltvkdlt 418
                  ++v+v+G+Gyi++e++  l+  g +v l+ r+e+   +++++++ k++  e+e+ +i+++  ++  +++ +g ++    ++g +  ++D ++ a+G  P +e   + s+++++++kG ikv++  +t  + +ya+GDv+          +l P+A aa   g+++a+++ aG  +++ k   G+  + +++   +a +Glte+++   ++  + v++++ +  n  Y          + + + kl+   d ++++g  ++G   v++ ++  ++aik ++t  d  
  MMETSP1137-20121227|4237_1 202 PSRVAVVGSGYIAVELAGILNVLGSKVDLMIRGETP-LRSMEADVIKMLVTEMEEAGINIVRGDSskITASDGGKTL-HTKDGATHgEYDEILFATGRTPVTESlqLSSAGIEVTEKGHIKVDDASRTTADGVYAVGDVIGK-------VDLTPVAIAA---GRLLADRLyAGVpESATKMDYGNIPTVVFSHpPLAVVGLTEKDAI-DKFGEDAVTIHKSTFVNMlYSReflvegqfQPKTFAKLVCVGDEQRVVGLHMIGLA-VDEILQGFSVAIKMGATKADFD 474
                 579******************************999.6899*******************98876114444444443.6677765438************88751256889***************************9864.......4445666665...7889998857889**********98888876369**********9.89999999999998776414321111112234568899999999**********98.9999999*****9999998865 PP

>> TIGR01292  TRX_reduct: thioredoxin-disulfide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.1   0.3   0.00083      0.11       2      40 ..      45      83 ..      44      91 .. 0.91
   2 !   43.3   0.8   3.4e-14   4.3e-12      91     287 ..     161     350 ..     136     360 .. 0.69

  Alignments for each domain:
  == domain 1    score: 9.1 bits;  conditional E-value: 0.00083
   TIGR01292  2 dviiiGaGpaGltaaiYaaranlktlliegkeaggqltt 40
                d ++iG+G +G+++a  aa  + k+++ie+++ gg  ++
  MMETSP1137-20121227|4237_1 45 DYLVIGGGSGGIASARRAASHGAKAAVIERARLGGTCVN 83
                789*******************************98765 PP

  == domain 2    score: 43.3 bits;  conditional E-value: 3.4e-14
   TIGR01292  91 vltedekeykakaviiAtGakarklgikgeeeflgrGvsyCavCDgalfknk...evavvGggdsAveealyLskiakkVtlvhrrdk.lraeki.....llerlkknekievllnstveeikGdekvesvkikntktkeeeelkvdgvFiaiGhepntellkel...leldeegyivvdeemrTsveGvfaaGDvrdkslrQvvtaag 287
                 v ++ +k+y+ak ++iA+G ++    ++g e             Dg++  ++   +vavvG+g  Ave a  L+ +++kV l+ r ++ lr+ ++     l+ +++++  i+++ +   ++i+ ++  ++++ k+ +t    + + d + +a G +p te l+ +   +e++e+g i+vd+ +rT  +Gv+a+GDv  k +    +a++
  MMETSP1137-20121227|4237_1 161 VSVD-DKTYTAKNILIAVGGTPA---VEGAELA--------INSDGFFELEQvpsRVAVVGSGYIAVELAGILNVLGSKVDLMIRGETpLRSMEAdvikmLVTEMEEA-GINIV-RGDSSKITASDGGKTLHTKDGAT----HGEYDEILFATGRTPVTESLQLSsagIEVTEKGHIKVDDASRTTADGVYAVGDVIGK-VDLTPVAIA 350
                 4444.478888888888887764...3333222........235888877776668**************************99986536665431001033333333.44443.33445566666556665555544....45678999**********99876679****************************996.333333333 PP

>> TIGR03169  Nterm_to_SelD: pyridine nucleotide-disulfide oxidoreductase family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.0   0.2      0.63        80     146     163 ..      44      61 ..      24      84 .. 0.69
   2 ?    2.7   0.0     0.094        12     191     263 ..     131     199 ..      99     201 .. 0.81
   3 !   41.9   0.3   1.2e-13   1.6e-11     145     281 ..     202     339 ..     197     354 .. 0.85

  Alignments for each domain:
  == domain 1    score: 0.0 bits;  conditional E-value: 0.63
   TIGR03169 146 kslavvGgGaagvElala 163
                  + +v+GgG +g+  a  
  MMETSP1137-20121227|4237_1  44 FDYLVIGGGSGGIASARR 61 
                 37789****999855544 PP

  == domain 2    score: 2.7 bits;  conditional E-value: 0.094
   TIGR03169 191 akvrklvkrllakrgievlekeevtevedealllaegetleadavllatgakapawLaesglsldedGflavk 263
                 ++++   +++l++++++ +e  +   ++  ++++ +++t++a  +l+a g  ++  ++  +l++++dGf++ +
  MMETSP1137-20121227|4237_1 131 SRLNGIYRNNLKNSDVTFIEGDASFVGP--KMVSVDDKTYTAKNILIAVGGTPA--VEGAELAINSDGFFELE 199
                 5566677889999999999998888777..555568999*********998775..79999999999998765 PP

  == domain 3    score: 41.9 bits;  conditional E-value: 1.2e-13
   TIGR03169 145 tkslavvGgGaagvElalalrkrlkkrglkaevslaseakllqalsakvrklvkrllakrgievlekeevtevede...alllaeget.leadavllatgakapa...wLaesglsldedGflavkktLqslshpevFaaGDca 281
                 + ++avvG+G  +vEla+ l+ +  k +l      +++++ l+ ++a v k++   ++++gi++++  + +  +++   +l +++g t  e d++l atg  + +    L++ g++++e+G ++v++  ++ + + v+a+GD++
  MMETSP1137-20121227|4237_1 202 PSRVAVVGSGYIAVELAGILNVLGSKVDLM-----IRGETPLRSMEADVIKMLVTEMEEAGINIVRGDSSKITASDggkTLHTKDGAThGEYDEILFATGRTPVTeslQLSSAGIEVTEKGHIKVDDASRT-TADGVYAVGDVI 339
                 569***************999888877765.....79****************************998877776666777777666551689********88754222799*******************9.7889******97 PP

>> TIGR02374  nitri_red_nirB: nitrite reductase [NAD(P)H], large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.2   0.8   5.1e-13   6.5e-11     141     278 ..     203     339 ..     191     353 .. 0.83

  Alignments for each domain:
  == domain 1    score: 39.2 bits;  conditional E-value: 5.1e-13
   TIGR02374 141 kkaaviGgGLLGLeaaraLknlGldvsvielapllmakqlDqtagrlLqrelekkGltvlleketveivkesvekaerlrfkDGss.leadlvvlaaGirPrde.La.aeaGlkvndrrGiivndsmqtsdPdiyavGeca 278
                  + av+G+G + +e a  L+ lG +v  +        + +++   ++L +e+e+ G+++  + ++ +i+ ++    ++l+ kDG +  e d +++a+G  P +e L   +aG++v++++ i v+d  +t    +yavG++ 
  MMETSP1137-20121227|4237_1 203 SRVAVVGSGYIAVELAGILNVLGSKVDLMIRG-ETPLRSMEADVIKMLVTEMEEAGINIVRG-DSSKITASD--GGKTLHTKDGAThGEYDEILFATGRTPVTEsLQlSSAGIEVTEKGHIKVDDASRTTADGVYAVGDVI 339
                 5789*********************9975443.3334667788889************9765.555666665..5799******761699***********8873442589***************************985 PP

>> TIGR04018  Bthiol_YpdA: putative bacillithiol system oxidoreductase, YpdA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.7   0.5   6.8e-12   8.7e-10       1     309 [.      45     359 ..      45     365 .. 0.78

  Alignments for each domain:
  == domain 1    score: 35.7 bits;  conditional E-value: 6.8e-12
   TIGR04018   1 dviiiGaGPiGlaaaieakkaglsyliiekgalvnsiyk...yPtnmtffstseklei....geiPfisenek...pt.rkealeYYrrvaekkklniklyeevekvkkke...ekfevktekeeyeakkvvvatGyydipnllnvpGedlpkvshyykeahpyvkqkvvvvGgknsavdaalelyrkgaevtlvvrgeelsekvkyWvkpdlenrikegkikalf..esevkeieeesvtletpegeveeiendfvlaltGyrpdlel..leklgveleedekipvydeetmEtnveglylaGvvaagletnkifiEngrlhakai 309
                 d ++iG+G  G+a+a  a  +g ++ +ie+  l  + ++    P+++ f  ++  +ei    ++  + +en k   p  +++  +Y  r+   ++ n+k   +v+ ++ ++   +  +v+ + ++y+ak++++a G   +p    v G +l   s  + e  + v  +v+vvG+   av+ a  l   g++v l++rge+  +++   v   l   ++e  i+++   +s++++ ++   tl+t++g + + e d +l  tG +p +e   l+++g+e++e+ +i v d     t+ +g+y +G v + ++ + + i  grl a+++
  MMETSP1137-20121227|4237_1  45 DYLVIGGGSGGIASARRAASHGAKAAVIERARLGGTCVNvgcVPKKVMFN-AASVMEIihqaAGYGLSVENMKldfPVlKQKRDAYVSRLNGIYRNNLKN-SDVTFIEGDAsfvGPKMVSVDDKTYTAKNILIAVGG--TP---AVEGAELAINSDGFFEL-EQVPSRVAVVGSGYIAVELAGILNVLGSKVDLMIRGETPLRSMEADVIKMLVTEMEEAGINIVRgdSSKITA-SDGGKTLHTKDGAT-HGEYDEILFATGRTPVTESlqLSSAGIEVTEKGHIKVDD--ASRTTADGVYAVGDVIGKVDLTPVAIAAGRLLADRL 359
                 789***************************99998887722257776665.5556666333345678888888444333555556777777766666654.678888777733345577889*************94..44...699****9888888775.557899******************************************************987521344444.34455777778887.8999***********887612568899999986555544..45899*************************988776 PP

>> TIGR01316  gltA: glutamate synthase (NADPH), homotetrameric
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   3.6     0.014       1.8     126     304 ..      36     234 ..      27     260 .. 0.66
   2 !   28.6   0.5     1e-09   1.3e-07     346     442 ..     258     356 ..     244     361 .. 0.85

  Alignments for each domain:
  == domain 1    score: 5.1 bits;  conditional E-value: 0.014
   TIGR01316 126 eekapstkkkvaviGaGpaGlavaselakkGhevtvfealhkpGGvlayG.ipefrlpkeivete.vkklkklGv...kfrldylvGkt...vtleelleky.......davfigtGaGl..pkllnieGeelkgvysandfltrvnlmkayefpkkdtp....v...evgkkvvviGgGntavdaartalrlGaevhvvyrr 304
                 e   + t++   viG G  G+a a   a +G +  v e  +  G  +  G +p+  +     ++e +++    G+   +++ld+ v k+   + + +l   y       d  fi   a    pk++ ++    ++ y+a++ l+ v    a e ++  +         +v  +v v+G+G++av+ a   + lG +v ++ r 
  MMETSP1137-20121227|4237_1  36 EADGEVTEFDYLVIGGGSGGIASARRAASHGAKAAVIERARLGGTCVNVGcVPKKVMFNAASVMEiIHQAAGYGLsveNMKLDFPVLKQkrdAYVSRLNGIYrnnlknsDVTFIEGDASFvgPKMVSVD----DKTYTAKNILIAVGGTPAVEGAELAINsdgfFeleQVPSRVAVVGSGYIAVELAGILNVLGSKVDLMIRG 234
                 555667888899**************************9999999998884676555444444441444444444112245566554321114444444444434455589999877764337777554....5789999999999988888877755431111322246789999999999999999999999999988775 PP

  == domain 2    score: 28.6 bits;  conditional E-value: 1e-09
   TIGR01316 346 vkfektelqeerdsgekrkvpvtdeevkleadavivaiGqea..nkiiaedsslktskrGtivvdedletsieGvfaGGdvirGeatvilalgdGkraa 442
                 + + + +  + + s++ +++ + d  +  e d +++a G+ +  + +   +++++++++G i+vd+  +t+ +Gv+a Gdvi   +   +a++ G+  a
  MMETSP1137-20121227|4237_1 258 INIVRGDSSKITASDGGKTLHTKDGATHGEYDEILFATGRTPvtESLQLSSAGIEVTEKGHIKVDDASRTTADGVYAVGDVIGKVDLTPVAIAAGRLLA 356
                 56666677777778888889999999999**********9873256888888******************************9999999****999766 PP

>> TIGR03140  AhpF: alkyl hydroperoxide reductase, F subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.3   1.7e-05    0.0022     203     250 ..      34      82 ..      17      96 .. 0.86
   2 !   20.8   1.4     2e-07   2.6e-05     354     499 ..     204     352 ..     171     356 .. 0.71

  Alignments for each domain:
  == domain 1    score: 14.4 bits;  conditional E-value: 1.7e-05
   TIGR03140 203 aeeaeeekekydvlvvGgGPagaaaaiyaarkGlkvalva.eriGGqvk 250
                  +ea+ e +++d lv+GgG  g a+a  aa  G k a++   r+GG   
  MMETSP1137-20121227|4237_1  34 VAEADGEVTEFDYLVIGGGSGGIASARRAASHGAKAAVIErARLGGTCV 82 
                 677888999*****************************97369999765 PP

  == domain 2    score: 20.8 bits;  conditional E-value: 2e-07
   TIGR03140 354 kvaviGGGnsGieaaidlaGivehvtvlefad....elkadkv..lveklkslsnvdiltsaktkeivgdgdkvtglkykdrsseeekkleldGvfvqiGlvpnteflkda...velnrrGeividergrtsvkGifaaGdvt.tvpykqiiiamG 499
                 +vav+G G   +e a  l  + ++v ++   +    ++ ad +  lv ++ + + ++i+   +  +i++  d  ++l+ kd +++     e d ++   G  p te l+ +   +e++++G i +d  +rt ++G++a Gdv  +v    + ia G
  MMETSP1137-20121227|4237_1 204 RVAVVGSGYIAVELAGILNVLGSKVDLMIRGEtplrSMEADVIkmLVTEM-EEAGINIVRGDS-SKITAS-DGGKTLHTKDGATHG----EYDEILFATGRTPVTESLQLSsagIEVTEKGHIKVDDASRTTADGVYAVGDVIgKVDLTPVAIAAG 352
                 79999999988888877777788888875433111146677442133333.344566655444.445444.333456666665544....578899999**9999988643346***************************951455566666655 PP

>> TIGR03143  AhpF_homolog: putative alkyl hydroperoxide reductase F subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.9   0.1    0.0017      0.21       5      42 ..      44      81 ..      41     120 .. 0.78
   2 !   24.0   0.9   2.1e-08   2.7e-06     145     285 ..     204     341 ..     157     371 .. 0.75

  Alignments for each domain:
  == domain 1    score: 7.9 bits;  conditional E-value: 0.0017
   TIGR03143  5 ydlvviGgGpaglsaGiyagraklkvliiekdelGGqi 42
                +d +viGgG+ g+++   a+    k  +ie+ +lGG  
  MMETSP1137-20121227|4237_1 44 FDYLVIGGGSGGIASARRAASHGAKAAVIERARLGGTC 81
                799*********************************64 PP

  == domain 2    score: 24.0 bits;  conditional E-value: 2.1e-08
   TIGR03143 145 dvlviGgGfaaaeeavfltkyakkvtvivrepdftcakaiaekvkanPkievkfnvelkevtGddv.lreakfvnnatGeeteykakkdegtfGvfvfv.GyvPsselfk...gkvelderGyvvtnedletnveGvyaaGdlrvk 285
                  v v+G+G+ a e a  l   ++kv +++r++  t  +++ ++v +   +     +e++e++ + v   ++k+     G++ + k  + +g +   +f+ G +P +e ++     +e+ e+G++  ++  +t  +Gvya+Gd+  k
  MMETSP1137-20121227|4237_1 204 RVAVVGSGYIAVELAGILNVLGSKVDLMIRGE--TPLRSMEADVIK---M---LVTEMEEAGINIVrGDSSKITASDGGKTLHTKDGATHGEYDEILFAtGRTPVTESLQlssAGIEVTEKGHIKVDDASRTTADGVYAVGDVIGK 341
                 589***************************97..445555555432...2...3466666653332033567888888888888877888888767775499**99865422278***************************9766 PP

>> TIGR01318  gltD_gamma_fam: glutamate synthase, small subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   0.1     0.019       2.4     145     187 ..      47      89 ..      38     128 .. 0.82
   2 ?    2.7   0.0     0.061       7.9     137     171 ..     198     232 ..     191     236 .. 0.87
   3 !   15.1   0.2   1.1e-05    0.0014     383     460 ..     284     358 ..     244     362 .. 0.74

  Alignments for each domain:
  == domain 1    score: 4.5 bits;  conditional E-value: 0.019
   TIGR01318 145 aviGaGpaGlacadvlaraGvkvvvfdrypeiGGlltfGipsf 187
                  viG+G  G+a a + a  G k+ v +r    G  ++ G  + 
  MMETSP1137-20121227|4237_1  47 LVIGGGSGGIASARRAASHGAKAAVIERARLGGTCVNVGCVPK 89 
                 59**************************877666777776554 PP

  == domain 2    score: 2.7 bits;  conditional E-value: 0.061
   TIGR01318 137 vkktgkrvaviGaGpaGlacadvlaraGvkvvvfd 171
                 ++++  rvav+G+G   +  a +l+  G kv++  
  MMETSP1137-20121227|4237_1 198 LEQVPSRVAVVGSGYIAVELAGILNVLGSKVDLMI 232
                 567889**********************9998765 PP

  == domain 3    score: 15.1 bits;  conditional E-value: 1.1e-05
   TIGR01318 383 avleadvviiafGfephame.wlaehgikldskGrivaaeeselayqtsnpkifaGGdivrGadlvvtavaeGrkaaeg 460
                 +  e d +++a G +p +    l++ gi++ +kG+i++++    a +t+ + ++a Gd++   dl   a+a+Gr  a+ 
  MMETSP1137-20121227|4237_1 284 THGEYDEILFATGRTPVTESlQLSSAGIEVTEKGHIKVDD----ASRTTADGVYAVGDVIGKVDLTPVAIAAGRLLADR 358
                 44577899999999998765269999************95....4579999***********************98875 PP

>> TIGR00275  TIGR00275: flavoprotein, HI0933 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.7   1.6   0.00055      0.07       2      31 ..      47      76 ..      46      86 .. 0.90
   2 ?    4.9   0.0     0.016       2.1     140     165 ..     160     183 ..      90     222 .. 0.71
   3 !    9.0   0.0   0.00093      0.12     104     163 ..     241     299 ..     235     323 .. 0.77

  Alignments for each domain:
  == domain 1    score: 9.7 bits;  conditional E-value: 0.00055
   TIGR00275  2 iiiGgGaaGlmaAitaaeegakVlllEknk 31
                ++iGgG  G+ +A +aa++gak +++E+++
  MMETSP1137-20121227|4237_1 47 LVIGGGSGGIASARRAASHGAKAAVIERAR 76
                79*************************986 PP

  == domain 2    score: 4.9 bits;  conditional E-value: 0.016
   TIGR00275 140 evetekkeleakkvilatGgksypkl 165
                  v++++k+++ak++++a+Gg   p++
  MMETSP1137-20121227|4237_1 160 MVSVDDKTYTAKNILIAVGG--TPAV 183
                 46679***************..4544 PP

  == domain 3    score: 9.0 bits;  conditional E-value: 0.00093
   TIGR00275 104 saksvldaLlkelkelgvevlteskvksikkeeekfevet..ekkeleakkvilatGgksyp 163
                   ++v+++L +e++e+g+++    + ++i+ ++++ +++t  ++++ e++++++atG    p
  MMETSP1137-20121227|4237_1 241 MEADVIKMLVTEMEEAGINIVRGDS-SKITASDGGKTLHTkdGATHGEYDEILFATGRT--P 299
                 5579****************88766.5676777777777755788899*********83..3 PP

>> TIGR03997  mycofact_OYE_2: mycofactocin system FadH/OYE family oxidoreductase 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.4   4.4e-07   5.7e-05     355     446 ..      22     110 ..      12     127 .. 0.74
   2 ?    1.2   0.0      0.15        20     398     454 ..     221     266 ..     181     330 .. 0.73

  Alignments for each domain:
  == domain 1    score: 19.5 bits;  conditional E-value: 4.4e-07
   TIGR03997 355 lgCvvnPraGrelkeavtlkkarrrkkvlvvGgGPaGleaaataarrGhrvtllereeelGGqvklaaklpgreelae.lvrdlaselkelgv 446
                 ++ ++ PraGr + ea       ++   lv+GgG +G+++a+ aa  G +  ++er+ +lGG    +  +p +  +++  v ++ ++ +  g+
  MMETSP1137-20121227|4237_1  22 FAPLTAPRAGRLVAEADG---EVTEFDYLVIGGGSGGIASARRAASHGAKAAVIERA-RLGGTCVNVGCVPKKVMFNAaSVMEIIHQAAGYGL 110
                 556788999998444432...22334679**************************97.68888888888888877754135555555555555 PP

  == domain 2    score: 1.2 bits;  conditional E-value: 0.15
   TIGR03997 398 aarrGhrvtllereeelGGqvklaaklpgreelaelvrdlaselkelgvevklGvea 454
                     G +v l+ r+           + p r+  a++++ l++e++e+g+++  G ++
  MMETSP1137-20121227|4237_1 221 LNVLGSKVDLMIRG-----------ETPLRSMEADVIKMLVTEMEEAGINIVRGDSS 266
                 44444444444333...........35667777788888888888888888777654 PP

>> TIGR01317  GOGAT_sm_gam: glutamate synthase, NADH/NADPH, small subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   0.4     0.011       1.4     142     185 ..      42      85 ..      30     112 .. 0.82
   2 ?   -0.2   0.0      0.57        73     144     171 ..     203     230 ..     198     237 .. 0.85
   3 !   14.7   0.1   1.8e-05    0.0023     375     471 ..     262     356 ..     239     361 .. 0.75

  Alignments for each domain:
  == domain 1    score: 5.5 bits;  conditional E-value: 0.011
   TIGR01317 142 tGkkvavvGsGPaGlaaadqlnraGhtvtvferedrvGGllryG 185
                 t +   v+G G  G+a+a + +  G + +v er+   G  +  G
  MMETSP1137-20121227|4237_1  42 TEFDYLVIGGGSGGIASARRAASHGAKAAVIERARLGGTCVNVG 85 
                 5556679**************************85555555555 PP

  == domain 2    score: -0.2 bits;  conditional E-value: 0.57
   TIGR01317 144 kkvavvGsGPaGlaaadqlnraGhtvtv 171
                  +vavvGsG   +  a  ln  G +v +
  MMETSP1137-20121227|4237_1 203 SRVAVVGSGYIAVELAGILNVLGSKVDL 230
                 68**************999999998876 PP

  == domain 3    score: 14.7 bits;  conditional E-value: 1.8e-05
   TIGR01317 375 rtvevelkkdedGkyeleevpgseevleadlvllalGfvg.peqallddlgvdkdergnikaeldesetsidGvfaaGdarrGqslivwaineGreaa 471
                 r  + +++ ++ Gk    + ++  +  e d +l+a G +  +e+  l++ g++ +e+g+i + +d s+t+ dGv+a+Gd+     l   ai+ Gr  a
  MMETSP1137-20121227|4237_1 262 RGDSSKITASDGGK--TLHTKDGATHGEYDEILFATGRTPvTESLQLSSAGIEVTEKGHI-KVDDASRTTADGVYAVGDVIGKVDLTPVAIAAGRLLA 356
                 55555555555555..3333444455677889999998862555689*************.55677779***********999999999**9999877 PP

>> TIGR02032  GG-red-SF: geranylgeranyl reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.3   1.9e-06   0.00024       1      54 [.      44      97 ..      44     131 .. 0.86

  Alignments for each domain:
  == domain 1    score: 18.7 bits;  conditional E-value: 1.9e-06
   TIGR02032  1 yDvvvvGaGpaGssaAlrlakkGlrVlllekkelprekeCggalskraveelel 54
                +D +v+G+G  G + A+r+a+ G++ +++e+++l +     g ++k+++  +  
  MMETSP1137-20121227|4237_1 44 FDYLVIGGGSGGIASARRAASHGAKAAVIERARLGGTCVNVGCVPKKVMFNAAS 97
                799*********************************988888888888876655 PP

>> TIGR00292  TIGR00292: thiazole biosynthesis enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.6     2e-05    0.0026      18      69 ..      40      90 ..      33     108 .. 0.80

  Alignments for each domain:
  == domain 1    score: 14.9 bits;  conditional E-value: 2e-05
   TIGR00292 18 dyaesDviivGaGpsGLtaayylakeglkvvvlerklaiGGGswgGGmlfsk 69
                ++ e D +++G+G+ G+++a+  a +g k +v+er   +GG     G + +k
  MMETSP1137-20121227|4237_1 40 EVTEFDYLVIGGGSGGIASARRAASHGAKAAVIERA-RLGGTCVNVGCVPKK 90
                56789*****************************96.466665555554444 PP

>> TIGR00031  UDP-GALP_mutase: UDP-galactopyranose mutase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.1   1.7e-05    0.0021       2      42 ..      44      83 ..      43     103 .. 0.89

  Alignments for each domain:
  == domain 1    score: 14.9 bits;  conditional E-value: 1.7e-05
   TIGR00031  2 fdyiivGaGlsGivlaeilaklnkrvlvvekrnhiGGncyd 42
                fdy+++G G  Gi  a  +a ++ +  v+e r ++GG c +
  MMETSP1137-20121227|4237_1 44 FDYLVIGGGSGGIASARRAASHGAKAAVIE-RARLGGTCVN 83
                9****************************9.5789***976 PP

>> TIGR03996  mycofact_OYE_1: mycofactocin system FadH/OYE family oxidoreductase 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   1.1   4.6e-05    0.0059     341     412 ..      15      82 ..       7     115 .. 0.81
   2 !    6.7   2.2    0.0037      0.48     344     522 ..     171     358 ..     160     366 .. 0.64

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 4.6e-05
   TIGR03996 341 rdprnpvvtcvGnpaaGfetvdpdeaeraatpgdvlvvGGGpaGleaarvlavrGhrvtlaeasarlGGmvr 412
                 r +r  v + +  p aG       ea+  +t  d lv+GGG  G+ +ar  a +G +  ++e+ arlGG+  
  MMETSP1137-20121227|4237_1  15 RFSRPAVFAPLTAPRAGRLVA---EADGEVTEFDYLVIGGGSGGIASARRAASHGAKAAVIER-ARLGGTCV 82 
                 555666666666677776554...456679999****************************98.79999864 PP

  == domain 2    score: 6.7 bits;  conditional E-value: 0.0037
   TIGR03996 344 rnpvvtcvGnpaa.Gfe.tvdpdea.eraatpgdvlvvGGGpaGleaarvlavrGhrvtlaeasarlGGmvriaargdGlsrlaaladwle....decrrlGvelrlgaavdaeel..daaraaGevvvlatGsvarplpap.vdatvrvldaae..vleaddalaeGpvvvidplG....Gpvgvavaealaar 522
                 +n +++  G pa  G e +++ d   e   +p+ v vvG G   +e a +l v G +v l+ ++      +r +     ++ +++l   +e    +  r+   ++      ++ +   +a++ + + +++atG ++   +     a ++v +  +  v +a+ + a+G ++v d +G     pv++a  + la+r
  MMETSP1137-20121227|4237_1 171 KNILIAVGGTPAVeGAElAINSDGFfELEQVPSRVAVVGSGYIAVELAGILNVLGSKVDLMIRGET---PLRSME----ADVIKMLVTEMEeagiNIVRGDSSKITASDGGKTLHTkdGATHGEYDEILFATGRTPVTESLQlSSAGIEVTEKGHikVDDASRTTADGVYAVGDVIGkvdlTPVAIAAGRLLADR 358
                 5666666677764355523455554677889*****************************988754...344443....23333333322200003334433333332222222220033334445699999999999777655666777766551155777789999999999999555559999999999875 PP

>> TIGR03315  Se_ygfK: putative selenate reductase, YgfK subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.4   4.0   0.00026     0.033     534     836 ..      40     360 ..      31     372 .. 0.65

  Alignments for each domain:
  == domain 1    score: 9.4 bits;  conditional E-value: 0.00026
   TIGR03315 534 ksekhkvaviGaGPaGlsagyflaraGlpvtvfekkekagGvvkni..iPe.frisaeviqkdlelvkkkGvefklGvsedltvdelkkegykyvvlaiGadkssklklkegnervlksleflkefkedk.tklklGkrvvvvGgGntamdaaraalrvpGvekvtvvyrrt....kkemPaskeeleealedGvefkel.lsPekfedg...klvcekmk.lgekdasGrrrpvet...gelvel.......eadaviaavGeqvdtellk..klgieldekgkvvvneetketsvtnvfviGdakkGPativeaiadgrkaakail 836
                 +  +    viG+G  G++++   a +G + +v+e+  + gG++ n+  +P+     a ++ + ++ ++  G  ++     +l+   lk++   yv    G  +++  k +++ + +    +f+     +   k+   k++ +  gG  a++ a  a + +G  +   v  r       ++  +   + ++l   v+++    +P +  ++   k+ + +m+  g +  +G    + +   g++++        e d ++ a G+   te l+    gie+ ekg+++v+++ + t+ ++v+ +Gd+         aia gr  a+ ++
  MMETSP1137-20121227|4237_1  40 EVTEFDYLVIGGGSGGIASARRAASHGAKAAVIERA-RLGGTCVNVgcVPKkVMFNAASVMEIIHQAAGYGLSVEN---MKLDFPVLKQKRDAYVSRLNGIYRNNL-K-NSDVTFIEGDASFVGPKMVSVdDKTYTAKNILIAVGGTPAVEGAELAINSDGFFELEQVPSRVavvgSGYIAVELAGILNVLGSKVDLMIRgETPLRSMEAdviKMLVTEMEeAGINIVRGDSSKITAsdgGKTLHTkdgathgEYDEILFATGRTPVTESLQlsSAGIEVTEKGHIKVDDA-SRTTADGVYAVGDVIGKVDLTPVAIAAGRLLADRLY 360
                 555556679999999999999999999999999985.577777776557762445666677777777777766664...466666677777778877777766542.2.2333444445677765544440444556888888899999999999999999877766665541111467777888888899999998865256766554311133344443122222333333332211133332211111126899*******988776542289**************9.88999********97666656668888888777766 PP

>> TIGR03467  HpnE: squalene-associated FAD-dependent desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.6   3.5    0.0001     0.013       2      38 ..      47      82 ..      46      89 .. 0.90

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 0.0001
   TIGR03467  2 vvvGgGlAGLaAAveLaraGvrvtllEarrqlGGRar 38
                +v+GgG  G+a A + a++G++  ++E++ +lGG + 
  MMETSP1137-20121227|4237_1 47 LVIGGGSGGIASARRAASHGAKAAVIERA-RLGGTCV 82
                69*************************87.5899875 PP

>> TIGR01372  soxA: sarcosine oxidase, alpha subunit family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   1.9   1.8e-05    0.0023     168     206 ..      43      80 ..      34      87 .. 0.84
   2 ?   -2.8   0.0       1.6     2e+02     387     464 ..     262     344 ..     210     369 .. 0.60

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 1.8e-05
   TIGR01372 168 hcDvLvvGaGpaGLaaAraAaraGarvilvdeqaeaGGs 206
                   D Lv+G+G+ G+a+Ar Aa++Ga+  +++ +a+ GG+
  MMETSP1137-20121227|4237_1  43 EFDYLVIGGGSGGIASARRAASHGAKAAVIE-RARLGGT 80 
                 5699**********************99886.5677776 PP

  == domain 2    score: -2.8 bits;  conditional E-value: 1.6
   TIGR01372 387 rvesvkvarvdlst..aesgaeeeleaDallvsgGwsPvvhLasqakgklawdeeraaFlpde...avqelllaGAvnglfgl 464
                 r +s+k++  d+++  ++ ++ ++ e D +l ++G +Pv      + + ++  e+ +  + d    +++++ ++G v g ++l
  MMETSP1137-20121227|4237_1 262 RGDSSKITASDGGKtlHTKDGATHGEYDEILFATGRTPVTESLQLSSAGIEVTEKGHIKVDDAsrtTADGVYAVGDVIGKVDL 344
                 33445555555444344455556667777777777777765444444444444444444443322245555555555555555 PP

>> TIGR02730  carot_isom: carotene isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.1   0.00021     0.027       1      36 [.      44      79 ..      44      90 .. 0.91
   2 ?   -2.6   0.0       3.1   3.9e+02     201     220 ..     342     362 ..     322     367 .. 0.58

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 0.00021
   TIGR02730  1 ydaivigsgigglvtatqlaakgakvlvlekylipg 36
                +d +vig g gg+ +a + a++gak  v+e+  + g
  MMETSP1137-20121227|4237_1 44 FDYLVIGGGSGGIASARRAASHGAKAAVIERARLGG 79
                899***************************976655 PP

  == domain 2    score: -2.6 bits;  conditional E-value: 3.1
   TIGR02730 201 adltpm.inagmvlsdrhygg 220
                  dltp+ i ag +l+dr y g
  MMETSP1137-20121227|4237_1 342 VDLTPVaIAAGRLLADRLYAG 362
                 345554355666666666666 PP

>> TIGR02734  crtI_fam: phytoene desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   2.0   0.00014     0.018       2      35 ..      47      79 ..      46      84 .. 0.89

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 0.00014
   TIGR02734  2 vViGaGlgGLAlAirLaaaGievtvlekrdkpGG 35
                +ViG+G gG+A+A r a++G +  v+e+  ++GG
  MMETSP1137-20121227|4237_1 47 LVIGGGSGGIASARRAASHGAKAAVIERA-RLGG 79
                6**************************75.5666 PP

>> TIGR03378  glycerol3P_GlpB: glycerol-3-phosphate dehydrogenase, anaerobic, B subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.2   0.00021     0.027       1      31 [.      44      74 ..      44      78 .. 0.95
   2 ?   -2.4   0.0       3.1     4e+02     365     396 ..     309     343 ..     306     352 .. 0.65

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 0.00021
   TIGR03378  1 fDviiiGgGlaGlscalrlaeaGkktaiiaa 31
                fD ++iGgG  G+++a r+a +G k+a+i +
  MMETSP1137-20121227|4237_1 44 FDYLVIGGGSGGIASARRAASHGAKAAVIER 74
                9***************************976 PP

  == domain 2    score: -2.4 bits;  conditional E-value: 3.1
   TIGR03378 365 fGvktdak..lrvskag.ktienLyaiGavlsgyd 396
                 +G+++++k  ++v  a  +t + +ya+G v+++ d
  MMETSP1137-20121227|4237_1 309 AGIEVTEKghIKVDDASrTTADGVYAVGDVIGKVD 343
                 566666651144444431567899******99876 PP

>> TIGR03364  HpnW_proposed: FAD dependent oxidoreductase TIGR03364
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.8   8.7e-05     0.011       2      44 ..      45      85 ..      44      93 .. 0.84
   2 ?   -3.4   0.2       6.6   8.4e+02       2      31 ..     204     233 ..     203     237 .. 0.80

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 8.7e-05
   TIGR03364  2 dvvvvGaGivGlahAlaaarrGlkVtvierssraaGAsvrNFG 44
                d +v+G+G  G+a A +aa++G k +vier+    G +  N G
  MMETSP1137-20121227|4237_1 45 DYLVIGGGSGGIASARRAASHGAKAAVIERAR--LGGTCVNVG 85
                679***************************75..455555555 PP

  == domain 2    score: -3.4 bits;  conditional E-value: 6.6
   TIGR03364   2 dvvvvGaGivGlahAlaaarrGlkVtvier 31 
                 +v+vvG+G + +  A      G kV ++ r
  MMETSP1137-20121227|4237_1 204 RVAVVGSGYIAVELAGILNVLGSKVDLMIR 233
                 699*****9999999888888888877655 PP

>> TIGR02853  spore_dpaA: dipicolinic acid synthetase, A subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.1       6.5   8.4e+02     155     182 ..      47      74 ..      38      82 .. 0.78
   2 ?    9.8   0.1   0.00073     0.094     132     206 ..     181     256 ..     159     261 .. 0.81
   3 ?    0.7   0.1      0.43        55     153     184 ..     440     471 ..     432     484 .. 0.87

  Alignments for each domain:
  == domain 1    score: -3.2 bits;  conditional E-value: 6.5
   TIGR02853 155 lvlGlGrtGktiarllsalgakvsvaar 182
                 lv+G G  G + ar  ++ gak  v  r
  MMETSP1137-20121227|4237_1  47 LVIGGGSGGIASARRAASHGAKAAVIER 74 
                 7888888888888888888888877655 PP

  == domain 2    score: 9.8 bits;  conditional E-value: 0.00073
   TIGR02853 132 PtaeGaimlaiestdf...tihgsrvlvlGlGrtGktiarllsalgakvsvaareskdlarilelglepvelkeleek 206
                 P++eGa  lai+s  f       srv+v+G G +   +a  l+ lg+kv    r ++ l r +e+ +  + ++e+ee+
  MMETSP1137-20121227|4237_1 181 PAVEGA-ELAINSDGFfelEQVPSRVAVVGSGYIAVELAGILNVLGSKVDLMIRGETPL-RSMEADVIKMLVTEMEEA 256
                 777777.56666544311144569******************************98876.889999999999999886 PP

  == domain 3    score: 0.7 bits;  conditional E-value: 0.43
   TIGR02853 153 rvlvlGlGrtGktiarllsalgakvsvaares 184
                 +  v+Gl  +G ++ + l+++   ++++a + 
  MMETSP1137-20121227|4237_1 440 EQRVVGLHMIGLAVDEILQGFSVAIKMGATKA 471
                 5679***********************99875 PP

>> TIGR02352  thiamin_ThiO: glycine oxidase ThiO
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   1.4     0.011       1.4       2      35 ..      47      80 ..      46      86 .. 0.90
   2 ?   -2.1   0.0       2.6   3.4e+02       1      30 [.     205     234 ..     205     243 .. 0.88
   3 ?    2.7   0.0     0.095        12     152     205 ..     244     297 ..     230     313 .. 0.89

  Alignments for each domain:
  == domain 1    score: 5.7 bits;  conditional E-value: 0.011
   TIGR02352  2 lviGgGviGlsvAveLakrghkvtllekdevgsg 35
                lviGgG  G + A ++a++g+k +++e++++g+ 
  MMETSP1137-20121227|4237_1 47 LVIGGGSGGIASARRAASHGAKAAVIERARLGGT 80
                7***************************987765 PP

  == domain 2    score: -2.1 bits;  conditional E-value: 2.6
   TIGR02352   1 vlviGgGviGlsvAveLakrghkvtllekd 30 
                 v+v+G G i   +A  L   g kv l+ ++
  MMETSP1137-20121227|4237_1 205 VAVVGSGYIAVELAGILNVLGSKVDLMIRG 234
                 78****************999999998766 PP

  == domain 3    score: 2.7 bits;  conditional E-value: 0.095
   TIGR02352 152 ellkaLvkaleklGveiieevevqeieargekvtavktssekvqadqvvlaaGa 205
                 +++k Lv ++e++G +i +  + + ++++g k++ +k    + + d++ +a+G 
  MMETSP1137-20121227|4237_1 244 DVIKMLVTEMEEAGINIVRGDSSKITASDGGKTLHTKDGATHGEYDEILFATGR 297
                 67899**************************99999988888999******995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (500 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       217  (0.052901); expected 82.0 (0.02)
Passed bias filter:                      154  (0.0375427); expected 82.0 (0.02)
Passed Vit filter:                        55  (0.0134081); expected 4.1 (0.001)
Passed Fwd filter:                        32  (0.00780107); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              32  [number of targets reported over threshold]
# CPU time: 0.95u 0.17s 00:00:01.11 Elapsed: 00:00:00.85
# Mc/sec: 776.41
//
Query:       MMETSP1137-20121227|4238_1  [L=111]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (111 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        45  (0.0109703); expected 82.0 (0.02)
Passed bias filter:                       44  (0.0107265); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.12s 00:00:00.26 Elapsed: 00:00:00.26
# Mc/sec: 563.49
//
Query:       MMETSP1137-20121227|4239_1  [L=639]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.6e-14   50.6  13.7    3.2e-08   29.7   0.9    2.0  2  TIGR02917 PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein
    4.2e-14   50.5   8.5    1.4e-09   35.7   1.3    2.2  2  TIGR02521 type_IV_pilW: type IV pilus biogenesis/stability protein PilW
    4.5e-09   34.0   8.4    9.6e-05   20.0   2.3    2.5  2  TIGR02552 LcrH_SycD: type III secretion low calcium response chaperone LcrH/SycD
    8.8e-06   22.0   8.0     0.0003   16.9   0.2    2.1  2  TIGR03939 PGA_TPR_OMP: poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA
    2.6e-05   20.8   0.0     0.0032   14.0   0.0    2.2  2  TIGR00990 3a0801s09: mitochondrial precursor proteins import receptor
  ------ inclusion threshold ------
       0.27    8.6   5.6       0.49    7.7   3.9    1.3  1  TIGR03825 FliH_bacil: flagellar assembly protein FliH


Domain annotation for each model (and alignments):
>> TIGR02917  PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.7   0.9   4.6e-11   3.2e-08     468     560 ..     342     434 ..     339     436 .. 0.93
   2 !   28.7   5.8   9.6e-11   6.6e-08     138     242 ..     420     523 ..     414     532 .. 0.91

  Alignments for each domain:
  == domain 1    score: 29.7 bits;  conditional E-value: 4.6e-11
   TIGR02917 468 ynllgaiylgkkdlakAreafekALkiepdffpAlanLArldlqekniddAkqrfekvlaidpknlkallaLaelaarkgneeeavallekaa 560
                 ++ +g  + + + +a+A +a+e AL++  d+f A ++LA   ++ ++++ A++ +e++ a  p + + +++L  +  r+++ ++a a + +a 
  MMETSP1137-20121227|4239_1 342 HVCRGDNLRAGGRYAEAAAAYESALSLRADYFDAHHSLASAREKLGDLPGAQASYESACALRPADARCVTNLGIVLRRQNKLSAAEAAYRRAL 434
                 6667777778899********************************************************************999999998885 PP

  == domain 2    score: 28.7 bits;  conditional E-value: 9.6e-11
   TIGR02917 138 lgeleeAqksleqAlaiapksleaklglAqlalaenkldearalvdevLtadpknvdAllLkgdlllssgnieeAlaayrkaielkpnaiaallalatilleege 242
                 + +l +A++++  Al+ +p+ + a ++l  +++ +nkldea + +d+++ a+p+ ++Al+ +g +    g+ + Ala+++ a++++p +++a+ ++   + ++++
  MMETSP1137-20121227|4239_1 420 QNKLSAAEAAYRRALSLSPS-ARAHAALGNVLALQNKLDEALESLDAAVDASPSDAKALNSRGVVREEMGKPADALADFEAAAAAEPGFAKAEHNARRLRAQLQR 523
                 678999************95.7899*****************************************************************999887766666665 PP

>> TIGR02521  type_IV_pilW: type IV pilus biogenesis/stability protein PilW
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.7   1.3     2e-12   1.4e-09      44     129 ..     352     437 ..     337     450 .. 0.91
   2 !   18.9   0.6   2.8e-07   0.00019      31      99 ..     440     508 ..     435     513 .. 0.88

  Alignments for each domain:
  == domain 1    score: 35.7 bits;  conditional E-value: 2e-12
   TIGR02521  44 qgdlekAkenlekAleldpkdadanlalAlyyqqlgelekAeesfrkAltlkpnngdvlNNYGtFLcqqkkyeeAeqqfeaAiedp 129
                  g +++A ++ e Al l +++ da+++lA + ++lg+l  A++s++ A +l p++++ + N G  L +q k   Ae+ +++A++  
  MMETSP1137-20121227|4239_1 352 GGRYAEAAAAYESALSLRADYFDAHHSLASAREKLGDLPGAQASYESACALRPADARCVTNLGIVLRRQNKLSAAEAAYRRALSLS 437
                 68999*****************************************************************************9865 PP

  == domain 2    score: 18.9 bits;  conditional E-value: 2.8e-07
   TIGR02521  31 akirvqLaleYleqgdlekAkenlekAleldpkdadanlalAlyyqqlgelekAeesfrkAltlkpnng 99 
                 a+++  L+     q++l++A e+l+ A+ + p+da+a ++++++ +++g+   A + f+ A + +p  +
  MMETSP1137-20121227|4239_1 440 ARAHAALGNVLALQNKLDEALESLDAAVDASPSDAKALNSRGVVREEMGKPADALADFEAAAAAEPGFA 508
                 667777777778899**********************************************99988765 PP

>> TIGR02552  LcrH_SycD: type III secretion low calcium response chaperone LcrH/SycD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   2.3   1.4e-07   9.6e-05      31     125 ..     352     446 ..     346     446 .. 0.95
   2 !   18.9   0.3     3e-07    0.0002      52     132 ..     440     522 ..     438     526 .. 0.92

  Alignments for each domain:
  == domain 1    score: 20.0 bits;  conditional E-value: 1.4e-07
   TIGR02552  31 qgkyeeAeklFqlLaaldpteakywlgLaaclqalkeyeeAiaaYalaaaldlddprpvyhaaecllalgekeeAlkaLklaieiaeekeeysel 125
                  g+y+eA+ +++    l +  ++ + +La+++ +l++  +A+a Y+ a al++ d+r v  ++++l   ++   A++a ++a+ ++ + +++++l
  MMETSP1137-20121227|4239_1 352 GGRYAEAAAAYESALSLRADYFDAHHSLASAREKLGDLPGAQASYESACALRPADARCVTNLGIVLRRQNKLSAAEAAYRRALSLSPSARAHAAL 446
                 59**********99999********************************************************************9999988875 PP

  == domain 2    score: 18.9 bits;  conditional E-value: 3e-07
   TIGR02552  52 akywlgLaaclqalkeyeeAiaaYalaaaldlddprpvyhaaecllalgekeeAlkaLklaieiae..ekeeyselkeraeam 132
                 a+ +++L+ +l  +++ +eA++  ++a+ ++++d++++  ++++  ++g++++Al+++++a++     +k+e+++ + ra+  
  MMETSP1137-20121227|4239_1 440 ARAHAALGNVLALQNKLDEALESLDAAVDASPSDAKALNSRGVVREEMGKPADALADFEAAAAAEPgfAKAEHNARRLRAQLQ 522
                 67899********************************************************9998878899999999998875 PP

>> TIGR03939  PGA_TPR_OMP: poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.2   4.4e-07    0.0003     393     461 ..     371     439 ..     363     449 .. 0.92
   2 !    7.4   2.4   0.00033      0.23     403     472 ..     448     517 ..     440     530 .. 0.84

  Alignments for each domain:
  == domain 1    score: 16.9 bits;  conditional E-value: 4.4e-07
   TIGR03939 393 dyleaqslkvlllaysgdlseAekkleellatAPgNqslrlalaeveraRgwprrAeqllkkaeslepd 461
                 dy +a+ + ++++   gdl+ A+++ e + a  P+++    +l+ v r +++ ++Ae ++++a sl p 
  MMETSP1137-20121227|4239_1 371 DYFDAHHSLASAREKLGDLPGAQASYESACALRPADARCVTNLGIVLRRQNKLSAAEAAYRRALSLSPS 439
                 899***************************************************************654 PP

  == domain 2    score: 7.4 bits;  conditional E-value: 0.00033
   TIGR03939 403 lllaysgdlseAekkleellatAPgNqslrlalaeveraRgwprrAeqllkkaeslepdslsaergqaet 472
                 ++la +++l+eA ++l+++    P +++    ++ v++  g+p +A   +++a + ep  + ae++   +
  MMETSP1137-20121227|4239_1 448 NVLALQNKLDEALESLDAAVDASPSDAKALNSRGVVREEMGKPADALADFEAAAAAEPGFAKAEHNARRL 517
                 5678899999999999999999999999999999999999999999999999999999988888765444 PP

>> TIGR00990  3a0801s09: mitochondrial precursor proteins import receptor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.0   4.7e-06    0.0032     383     495 ..     357     468 ..     349     470 .. 0.88
   2 !    5.7   0.0    0.0015         1     186     229 ..     466     510 ..     465     528 .. 0.68

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 4.7e-06
   TIGR00990 383 kaeedfdkalkkdsedsdiyyhraqlhfikgefaeaakdydksidldpdfifsyiqlavlqyklgsiassealfrrakkkfpeaPdvynyyaellldknkfdealekfdlaie 495
                 +a   ++ al + ++  d ++  a  +  +g+   a+  y+ +  l p        l+++  +++++  +ea +rra    p a   +   +++l  +nk+deale  d a++
  MMETSP1137-20121227|4239_1 357 EAAAAYESALSLRADYFDAHHSLASAREKLGDLPGAQASYESACALRPADARCVTNLGIVLRRQNKLSAAEAAYRRALSLSPSAR-AHAALGNVLALQNKLDEALESLDAAVD 468
                 56667788888888888888888888888899999******************************************99888775.56779*******************986 PP

  == domain 2    score: 5.7 bits;  conditional E-value: 0.0015
   TIGR00990 186 aleldpdyvkalnrranaydqlgkyadalldltasslid.dfrde 229
                 a++  p   kaln r    +++gk adal d+ a +  + +f ++
  MMETSP1137-20121227|4239_1 466 AVDASPSDAKALNSRGVVREEMGKPADALADFEAAAAAEpGFAKA 510
                 556667778888888888888888888888887665433256544 PP

>> TIGR03825  FliH_bacil: flagellar assembly protein FliH
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   3.9   0.00071      0.49      37     108 ..     498     567 ..     470     575 .. 0.78

  Alignments for each domain:
  == domain 1    score: 7.7 bits;  conditional E-value: 0.00071
   TIGR03825  37 deeqeeeevlekAkeeaaeliekAeaelaavrekieqeraeleeererliqeAkqeGyedGfqaGesealse 108
                 +++++ e   +kA+++a +l+ + +   +++  ++  e + +++   +l   A+ eG e+G q+Ges ++++
  MMETSP1137-20121227|4239_1 498 EAAAAAEPGFAKAEHNARRLRAQLQ--REETTVQMGAEGEAAQTAAGELXAAAQMEGREEGRQEGESGGRAH 567
                 5566677778999999999976555..555666788888888889999*******************98875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (639 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       108  (0.0263286); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.54u 0.18s 00:00:00.72 Elapsed: 00:00:01.20
# Mc/sec: 702.84
//
Query:       MMETSP1137-20121227|4240_1  [L=246]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.7e-05   21.3   0.5    6.6e-05   20.5   0.3    1.5  1  TIGR02552 LcrH_SycD: type III secretion low calcium response chaperone LcrH/SycD


Domain annotation for each model (and alignments):
>> TIGR02552  LcrH_SycD: type III secretion low calcium response chaperone LcrH/SycD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   0.3   1.6e-08   6.6e-05      65     131 ..     170     236 ..     151     241 .. 0.85

  Alignments for each domain:
  == domain 1    score: 20.5 bits;  conditional E-value: 1.6e-08
   TIGR02552  65 lkeyeeAiaaYalaaaldlddprpvyhaaecllalgekeeAlkaLklaieiaeekeeyselkeraea 131
                  + yeeA+  + +a+ l+ +    ++h+a+c+  lg+ e+A ++ + ++ei + ++   + + +a a
  MMETSP1137-20121227|4240_1 170 HSSYEEALTHFLRATELKDKYITNLLHIAKCYDGLGQHERAAEFAAKVLEIEAISPDDVAARVEATA 236
                 578**************************************************99966555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (246 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       124  (0.0302292); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.24u 0.18s 00:00:00.42 Elapsed: 00:00:00.44
# Mc/sec: 737.94
//
Query:       MMETSP1137-20121227|4241_1  [L=243]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (243 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        90  (0.0219405); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.18s 00:00:00.39 Elapsed: 00:00:00.57
# Mc/sec: 552.99
//
Query:       MMETSP1137-20121227|4242_1  [L=91]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (91 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        59  (0.0143832); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.13s 00:00:00.27 Elapsed: 00:00:00.27
# Mc/sec: 444.85
//
Query:       MMETSP1137-20121227|4243_1  [L=59]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (59 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        43  (0.0104827); expected 82.0 (0.02)
Passed bias filter:                       41  (0.00999512); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.12s 00:00:00.24 Elapsed: 00:00:00.28
# Mc/sec: 268.53
//
Query:       MMETSP1137-20121227|4244_1  [L=268]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (268 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        86  (0.0209654); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.16s 00:00:00.37 Elapsed: 00:00:00.43
# Mc/sec: 822.63
//
Query:       MMETSP1137-20121227|4245_1  [L=263]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (263 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       185  (0.0451); expected 82.0 (0.02)
Passed bias filter:                      156  (0.0380302); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.15s 00:00:00.40 Elapsed: 00:00:00.39
# Mc/sec: 890.08
//
Query:       MMETSP1137-20121227|4246_1  [L=87]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (87 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        48  (0.0117016); expected 82.0 (0.02)
Passed bias filter:                       44  (0.0107265); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.17s 00:00:00.29 Elapsed: 00:00:00.36
# Mc/sec: 318.97
//
Query:       MMETSP1137-20121227|4247_1  [L=194]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.7e-06   24.7   0.0    3.1e-06   24.5   0.0    1.1  1  TIGR00601 rad23: UV excision repair protein Rad23


Domain annotation for each model (and alignments):
>> TIGR00601  rad23: UV excision repair protein Rad23
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.5   0.0   7.6e-10   3.1e-06     148     195 ..     146     194 .]      96     194 .] 0.73

  Alignments for each domain:
  == domain 1    score: 24.5 bits;  conditional E-value: 7.6e-10
   TIGR00601 148 retlvvG.sereetveeimemGyereeverAlRAafnnPdRAveYLltG 195
                  et +    + e++v+++memG++ e+  +AlR   n+ + A ++Ll G
  MMETSP1137-20121227|4247_1 146 TETYASAkPSEEQAVKNLMEMGFDAEKCRAALRKFDNDENQALDFLLQG 194
                 4444433146799********************9999999*******98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (194 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       146  (0.0355924); expected 82.0 (0.02)
Passed bias filter:                      137  (0.0333983); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.20u 0.13s 00:00:00.33 Elapsed: 00:00:00.57
# Mc/sec: 441.48
//
Query:       MMETSP1137-20121227|4248_1  [L=664]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (664 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        54  (0.0131643); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.16s 00:00:00.55 Elapsed: 00:00:00.91
# Mc/sec: 963.09
//
Query:       MMETSP1137-20121227|4249_1  [L=369]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.01   14.1   0.0       0.15   10.4   0.0    2.6  4  TIGR01444 fkbM_fam: methyltransferase, FkbM family


Domain annotation for each model (and alignments):
>> TIGR01444  fkbM_fam: methyltransferase, FkbM family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0      0.26   1.1e+03      54      75 ..     105     126 ..      91     138 .. 0.76
   2 ?    1.8   0.0     0.016        64      18      70 ..     176     227 ..     164     239 .. 0.74
   3 ?   10.4   0.0   3.7e-05      0.15      92     125 ..     228     263 ..     189     275 .. 0.69
   4 ?   -3.7   0.0      0.79   3.2e+03      57      75 ..     283     301 ..     282     305 .. 0.79

  Alignments for each domain:
  == domain 1    score: -2.1 bits;  conditional E-value: 0.26
   TIGR01444  54 naAvgdregeleftvsddatgn 75 
                 n  vgdr+ +l+f+++d + ++
  MMETSP1137-20121227|4249_1 105 NRGVGDRKKTLSFFQPDWNCSG 126
                 6689999999999999755444 PP

  == domain 2    score: 1.8 bits;  conditional E-value: 0.016
   TIGR01444  18 ravaegrviafEPlpdllekleenvklnnlknvkllnaAvgdregeleftvsd 70 
                 ++ + ++++ f+P+  + + ++ +  ++     +++n+ + +++g ++f +  
  MMETSP1137-20121227|4249_1 176 KRRPDCEIFTFDPTLSASAMAKVRQVEKSG-TLTFVNKGLASKDGSMVFGNLT 227
                 444558999999998888887766444444.39************99998775 PP

  == domain 3    score: 10.4 bits;  conditional E-value: 3.7e-05
   TIGR01444  92 Vevvtlddlveeag..lekvdllKiDvEGaEleVLr 125
                  +v+tl  +v+  g    ++d+lK+D+E  E++ + 
  MMETSP1137-20121227|4249_1 228 GAVSTLHTFVRDLGhdGREIDILKVDIESSEFDAIF 263
                 4577777777777766679*************9985 PP

  == domain 4    score: -3.7 bits;  conditional E-value: 0.79
   TIGR01444  57 vgdregeleftvsddatgn 75 
                 +gdr g+++++v+++++g+
  MMETSP1137-20121227|4249_1 283 LGDRIGQVQIEVHGSKRGD 301
                 7899999999999888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (369 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        85  (0.0207216); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.27u 0.14s 00:00:00.41 Elapsed: 00:00:00.36
# Mc/sec: 1352.89
//
Query:       MMETSP1137-20121227|4251_1  [L=158]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (158 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        69  (0.0168211); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.17s 00:00:00.35 Elapsed: 00:00:00.34
# Mc/sec: 613.36
//
Query:       MMETSP1137-20121227|4252_1  [L=1376]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0096   13.4   0.3       0.41    8.1   0.0    2.6  2  TIGR01277 thiQ: thiamine ABC transporter, ATP-binding protein


Domain annotation for each model (and alignments):
>> TIGR01277  thiQ: thiamine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.1   0.0   9.9e-05      0.41      13      44 ..     433     464 ..     424     472 .. 0.86
   2 !    2.3   0.1    0.0058        24     122     157 ..     679     714 ..     661     725 .. 0.82

  Alignments for each domain:
  == domain 1    score: 8.1 bits;  conditional E-value: 9.9e-05
   TIGR01277  13 lplefdlsveaGervailGesGaGkstllnli 44 
                 + le +ls+  G   a +G  G Gkstl+nl+
  MMETSP1137-20121227|4252_1 433 EELEKQLSLGCGPSAAFIGLNGIGKSTLINLL 464
                 56778899999*******************96 PP

  == domain 2    score: 2.3 bits;  conditional E-value: 0.0058
   TIGR01277 122 lerlpeelsGGqrqrvalarclvrekpillldepfs 157
                 + rl +e+  G+ + + l rcl++++   ++++p+ 
  MMETSP1137-20121227|4252_1 679 ILRLRHEIHCGEGKSLHLDRCLLQDQLKEIMENPLR 714
                 448999*******************99888888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1376 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       203  (0.0494881); expected 82.0 (0.02)
Passed bias filter:                      132  (0.0321794); expected 82.0 (0.02)
Passed Vit filter:                        36  (0.00877621); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.96u 0.18s 00:00:01.13 Elapsed: 00:00:00.89
# Mc/sec: 2040.64
//
Query:       MMETSP1137-20121227|4253_1  [L=164]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-22   77.7   0.1    1.8e-22   77.3   0.0    1.1  1  TIGR00596 rad1: DNA repair protein (rad1)


Domain annotation for each model (and alignments):
>> TIGR00596  rad1: DNA repair protein (rad1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.3   0.0   4.4e-26   1.8e-22       1      84 [.      83     163 ..      83     164 .] 0.96

  Alignments for each domain:
  == domain 1    score: 77.3 bits;  conditional E-value: 4.4e-26
   TIGR00596   1 RekvYleGGilsitsRiLvvDlLtkiipsekitGilvlrAdrivessqeaFilrlyRqknktGFikAFsdnpeaFtvgfsaler 84 
                 R + Yl GG+l +t+RiL vD+L    +s ++   +v +A+r+ e+s+ +Fi+r++Rq+n+tGF++A sd++ + t gfs++e+
  MMETSP1137-20121227|4253_1  83 RMEKYLGGGVLLVTTRILTVDMLCAACHSRTV---IVANAHRVGENSNISFIMRMFRQHNTTGFVRALSDDAASLTAGFSKVEK 163
                 7789************************9985...9*********************************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (164 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       162  (0.0394929); expected 82.0 (0.02)
Passed bias filter:                      131  (0.0319356); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.20u 0.12s 00:00:00.32 Elapsed: 00:00:00.33
# Mc/sec: 655.95
//
Query:       MMETSP1137-20121227|4254_1  [L=345]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0041   15.3   0.0     0.0074   14.4   0.0    1.3  1  TIGR00807 malonate_madL: malonate transporter, MadL subunit


Domain annotation for each model (and alignments):
>> TIGR00807  malonate_madL: malonate transporter, MadL subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.0   1.8e-06    0.0074      53     116 ..     257     320 ..     250     327 .. 0.81

  Alignments for each domain:
  == domain 1    score: 14.4 bits;  conditional E-value: 1.8e-06
   TIGR00807  53 kGklkkvsqfGvgfwsamyipivvamaakqnvvaaldGGllallaavaavvvsvlvialiskss 116
                 + ++k+  q+G+   +++++ ++ + aa   v +al+GG+l+ll + + +++  + i+l+ + +
  MMETSP1137-20121227|4254_1 257 RDEMKRARQQGLWEGATLWMLMLATAAAFALVQGALQGGFLGLLFGLCRILALPFSIPLLVRRH 320
                 5678888888876656667666666677777889************************998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (345 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        77  (0.0187713); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.27u 0.13s 00:00:00.40 Elapsed: 00:00:00.50
# Mc/sec: 910.72
//
Query:       MMETSP1137-20121227|4255_1  [L=156]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (156 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        34  (0.00828864); expected 82.0 (0.02)
Passed bias filter:                       27  (0.00658216); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.15s 00:00:00.30 Elapsed: 00:00:00.32
# Mc/sec: 643.45
//
Query:       MMETSP1137-20121227|4256_1  [L=47]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (47 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        53  (0.0129205); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.17s 00:00:00.29 Elapsed: 00:00:00.47
# Mc/sec: 131.99
//
Query:       MMETSP1137-20121227|4257_1  [L=331]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.096   10.5   8.2       0.34    8.7   0.0    3.7  4  TIGR02908 CoxD_Bacillus: cytochrome c oxidase, subunit IVB


Domain annotation for each model (and alignments):
>> TIGR02908  CoxD_Bacillus: cytochrome c oxidase, subunit IVB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.3     0.018        72      30      46 ..     115     131 ..     109     136 .. 0.81
   2 ?    3.1   0.1    0.0045        18      52      78 ..     173     199 ..     159     206 .. 0.80
   3 ?   -1.9   0.0      0.16   6.7e+02      27      48 ..     255     277 ..     248     288 .. 0.58
   4 ?    8.7   0.0   8.3e-05      0.34      23      58 ..     293     329 ..     279     331 .] 0.87

  Alignments for each domain:
  == domain 1    score: 1.2 bits;  conditional E-value: 0.018
   TIGR02908  30 vafalmilltliaflav 46 
                 ++ a+mi +t+ +f+  
  MMETSP1137-20121227|4257_1 115 LTTAIMIQFTITSFFHF 131
                 67899999999999865 PP

  == domain 2    score: 3.1 bits;  conditional E-value: 0.0045
   TIGR02908  52 dklfviplilllaavqvafqlyyfmhm 78 
                 ++ + +pl+ll+ +  + +q+ y + +
  MMETSP1137-20121227|4257_1 173 GQHMLVPLMLLFGVTFITMQFGYSVEL 199
                 567889**************9997665 PP

  == domain 3    score: -1.9 bits;  conditional E-value: 0.16
   TIGR02908  27 kqvvafalmillt.liaflaval 48 
                 +q+  f+  i+l  l+ f++ al
  MMETSP1137-20121227|4257_1 255 RQIPGFVYAIVLGeLVLFVCFAL 277
                 55556665555532444444433 PP

  == domain 4    score: 8.7 bits;  conditional E-value: 8.3e-05
   TIGR02908  23 eemkkqvvafalmilltliaflaval.eevdklfvip 58 
                  e+ +q+++f+   +l l af+ v l + vd+l+v p
  MMETSP1137-20121227|4257_1 293 GEIMYQILSFSAKSFLGLSAFFGVLLaDSVDQLYVDP 329
                 5899******************997537899999877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (331 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       111  (0.02706); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.26u 0.12s 00:00:00.38 Elapsed: 00:00:00.39
# Mc/sec: 1120.22
//
Query:       MMETSP1137-20121227|4258_1  [L=83]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (83 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        45  (0.0109703); expected 82.0 (0.02)
Passed bias filter:                       33  (0.00804486); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.14s 00:00:00.27 Elapsed: 00:00:00.27
# Mc/sec: 405.74
//
Query:       MMETSP1137-20121227|4259_1  [L=71]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      2e-07   28.7   0.0    2.3e-07   28.6   0.0    1.1  1  TIGR00231 small_GTP: small GTP-binding protein domain
  ------ inclusion threshold ------
      0.012   12.3   0.0      0.012   12.3   0.0    1.0  1  TIGR03156 GTP_HflX: GTP-binding protein HflX


Domain annotation for each model (and alignments):
>> TIGR00231  small_GTP: small GTP-binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.6   0.0   1.1e-10   2.3e-07       3      42 ..      17      54 ..      15      62 .. 0.83

  Alignments for each domain:
  == domain 1    score: 28.6 bits;  conditional E-value: 1.1e-10
   TIGR00231  3 eikivivGhvdvGKstLlnsllknkisiteskpgvtrdyv 42
                e+k+v+vG +++GK+tLl++l   + +i+ ++p+v+ ++ 
  MMETSP1137-20121227|4259_1 17 EYKVVMVGLDNAGKTTLLYRLHLGD-VIE-TQPTVGSKLC 54
                79*********************99.444.4488887665 PP

>> TIGR03156  GTP_HflX: GTP-binding protein HflX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   5.9e-06     0.012     190     217 ..      18      45 ..      11      68 .. 0.80

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 5.9e-06
   TIGR03156 190 ptvalvGYTNaGKstllnaltkaevlae 217
                  +v +vG  NaGK+tll +l   +v++ 
  MMETSP1137-20121227|4259_1  18 YKVVMVGLDNAGKTTLLYRLHLGDVIET 45 
                 5799***************988777654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (71 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       126  (0.0307167); expected 82.0 (0.02)
Passed bias filter:                      126  (0.0307167); expected 82.0 (0.02)
Passed Vit filter:                        37  (0.00901999); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.14u 0.19s 00:00:00.33 Elapsed: 00:00:00.33
# Mc/sec: 283.98
//
Query:       MMETSP1137-20121227|4260_1  [L=285]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (285 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        71  (0.0173086); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.14s 00:00:00.36 Elapsed: 00:00:00.48
# Mc/sec: 783.69
//
Query:       MMETSP1137-20121227|4261_1  [L=409]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (409 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       122  (0.0297416); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.14s 00:00:00.46 Elapsed: 00:00:00.40
# Mc/sec: 1349.59
//
Query:       MMETSP1137-20121227|4262_1  [L=250]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (250 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       110  (0.0268162); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.13s 00:00:00.34 Elapsed: 00:00:00.36
# Mc/sec: 916.59
//
Query:       MMETSP1137-20121227|4263_1  [L=174]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (174 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        25  (0.00609459); expected 82.0 (0.02)
Passed bias filter:                       24  (0.0058508); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.14s 00:00:00.33 Elapsed: 00:00:00.26
# Mc/sec: 883.31
//
Query:       MMETSP1137-20121227|4264_1  [L=592]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (592 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       216  (0.0526572); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.18s 00:00:00.57 Elapsed: 00:00:00.47
# Mc/sec: 1662.50
//
Query:       MMETSP1137-20121227|4265_1  [L=300]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.3e-13   48.6   3.5    5.4e-11   39.9   2.5    2.2  1  TIGR03970 Rv0697: dehydrogenase, Rv0697 family
    7.7e-13   45.7   0.0    3.4e-08   30.4   0.0    2.2  2  TIGR01810 betA: choline dehydrogenase
    2.6e-05   21.9   0.1    2.6e-05   21.9   0.1    1.7  2  TIGR02032 GG-red-SF: geranylgeranyl reductase family
    8.6e-05   19.8   0.1    0.00016   18.9   0.1    1.4  1  TIGR00745 apbA_panE: 2-dehydropantoate 2-reductase
    0.00027   18.2   0.6    0.00053   17.2   0.4    1.4  1  TIGR03467 HpnE: squalene-associated FAD-dependent desaturase
    0.00027   17.9   0.3    0.00047   17.1   0.2    1.3  1  TIGR03197 MnmC_Cterm: tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain
    0.00038   17.1   0.0    0.00061   16.4   0.0    1.4  1  TIGR02734 crtI_fam: phytoene desaturase
     0.0034   14.4   0.1     0.0068   13.4   0.1    1.4  1  TIGR01790 carotene-cycl: lycopene cyclase family protein
     0.0038   13.8   1.4       0.69    6.3   0.3    2.1  2  TIGR00551 nadB: L-aspartate oxidase
     0.0044   13.7   0.3     0.0086   12.8   0.2    1.4  1  TIGR00275 TIGR00275: flavoprotein, HI0933 family


Domain annotation for each model (and alignments):
>> TIGR03970  Rv0697: dehydrogenase, Rv0697 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.9   2.5   1.3e-13   5.4e-11       3     233 ..      14     297 ..      12     299 .. 0.77

  Alignments for each domain:
  == domain 1    score: 39.9 bits;  conditional E-value: 1.3e-13
   TIGR03970   3 vlvvGaGsaGsvlaarLsedpsatvtvleaGpgyl..dpsrl..paqltdalrlPigaas.svverygseLt.deprraaaiv................................rGrvlGGsgavnGayfcraleaDfeawsiasWsyddvLpafraietDl.Df...etelhGsaGPipvrrta...elsgisaafvaaa...raaGfgeeaDlngsgpd.....lsaGvgavPlnvd.dgrrvstavayLlPalkr.pnLrveaetrvvrilfsatravGvev 233
                  ++vGaG+aG+ laarL+   +  v++ e Gp +    +++l  p    d  + P++  + +++++y +e t d pr  ++ v                                  +++GG +  n a + r+ +  ++a + ++W+ +  +p+f+ +e+D   +    +e+ G +  +    t+   +  ++ +a +a +    + G   +a+  + +++       + v++  + +d +grr+s+a a+L P ++   n+++ + + v+r+l++++ra Gv +
  MMETSP1137-20121227|4265_1  14 YVIVGAGAAGCALAARLAL-AGNYVILFEEGPDHNflGTTELgtPMDPYDFGNQPLQMITpAITRNYWTEPTwDYPRNPSTNVdhsfqaaytrllvatnmmerpvaehgmrsfdhAAKIVGGGTMXNFAAYIRGGNGSLRALG-PGWEPEVLVPKFETMERDFlKLpstSDEIAGMSEALTLAATQsgyTHVPLGRAAAAGVeagAQVGAEAHAEAQAEAAEieaaaTRQVVSRLEVTIDaNGRRISAASAFLTPQVRAlHNFQLITGAAVTRVLMEGNRATGVAY 297
                 68***************87.578999******753223444400555578888999875515677898887657788888888888899999999999999******99988887789*************************.******************533333378899999999998887655555555554443310034444444444444444544444567888889996589************986437***********************86 PP

>> TIGR01810  betA: choline dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   0.0   1.3e-05    0.0052       1      37 [.      13      47 ..      13      80 .. 0.85
   2 !   30.4   0.0   8.2e-11   3.4e-08      79     232 ..     129     297 ..     111     299 .. 0.69

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 1.3e-05
   TIGR01810  1 dyiiiGaGsaGsvlatrlsedvsnsvlvleaGgsdyr 37
                +y+i+GaG+aG +la+rl+  + n v+++e G +d +
  MMETSP1137-20121227|4265_1 13 EYVIVGAGAAGCALAARLALAG-NYVILFEEG-PDHN 47
                59****************9866.567778876.5555 PP

  == domain 2    score: 30.4 bits;  conditional E-value: 8.2e-11
   TIGR01810  79 GkvlGGsssinGmvyvrGnaldlekwakeeGleswayadvlpyykrletsdg....geedyrGtdGpvkvrrgkad...nplfeal...ieaGveaGyektedlnG........fkqeGfGpldrtvt.rGrrvsaarayldpalk.rknlevrtralvdkivfegkratGvef 232
                  k++GG ++ n   y+rG +  l          +w+    +p +  +e+ +     + ++  G    + +  ++++    pl +a    +eaG + G e   +             ++    l+ t+  +Grr+saa+a+l+p ++  +n++++t a v+++ +eg+ratGv +
  MMETSP1137-20121227|4265_1 129 AKIVGGGTMXNFAAYIRGGNGSLRALGP-----GWEPEVLVPKFETMERDFLklpsTSDEIAGMSEALTLAATQSGythVPLGRAAaagVEAGAQVGAEAHAEAQAeaaeieaaATRQVVSRLEVTIDaNGRRISAASAFLTPQVRaLHNFQLITGAAVTRVLMEGNRATGVAY 297
                 6899999999999999999888766554.....7999999999999998875222145588888888877554443223898776422255555555544333322000000002333456677788789***********98765269***********************87 PP

>> TIGR02032  GG-red-SF: geranylgeranyl reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.9   0.1   6.4e-08   2.6e-05       4      31 ..      15      42 ..      13      49 .. 0.94
   2 ?   -2.1   0.3       1.3   5.2e+02     104     148 ..     215     256 ..     205     273 .. 0.55

  Alignments for each domain:
  == domain 1    score: 21.9 bits;  conditional E-value: 6.4e-08
   TIGR02032  4 vvvGaGpaGssaAlrlakkGlrVlllek 31
                v+vGaG aG+++A+rla +G  V+l+e+
  MMETSP1137-20121227|4265_1 15 VIVGAGAAGCALAARLALAGNYVILFEE 42
                9*************************97 PP

  == domain 2    score: -2.1 bits;  conditional E-value: 1.3
   TIGR02032 104 agaelllettvlsveiedekvkvevredekkevtakivigAdGak 148
                 aga++  e++++++    e++++e+++ +++  + ++ i+A+G +
  MMETSP1137-20121227|4265_1 215 AGAQVGAEAHAEAQA---EAAEIEAAATRQVVSRLEVTIDANGRR 256
                 444444444444322...334444444344445556666666654 PP

>> TIGR00745  apbA_panE: 2-dehydropantoate 2-reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.1   3.8e-07   0.00016       2      29 ..      14      41 ..      13      49 .. 0.90

  Alignments for each domain:
  == domain 1    score: 18.9 bits;  conditional E-value: 3.8e-07
   TIGR00745  2 iailGaGAvGsllgakLaragadVtlla 29
                ++i+GaGA G++l+a+La+ag+ V+l+ 
  MMETSP1137-20121227|4265_1 14 YVIVGAGAAGCALAARLALAGNYVILFE 41
                79**********************9975 PP

>> TIGR03467  HpnE: squalene-associated FAD-dependent desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.4   1.3e-06   0.00053       2      31 ..      15      44 ..      14      47 .. 0.95

  Alignments for each domain:
  == domain 1    score: 17.2 bits;  conditional E-value: 1.3e-06
   TIGR03467  2 vvvGgGlAGLaAAveLaraGvrvtllEarr 31
                v+vG+G AG+a A++La aG  v l+E ++
  MMETSP1137-20121227|4265_1 15 VIVGAGAAGCALAARLALAGNYVILFEEGP 44
                7**************************987 PP

>> TIGR03197  MnmC_Cterm: tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.2   1.2e-06   0.00047       3      30 ..      15      42 ..      13      46 .. 0.93

  Alignments for each domain:
  == domain 1    score: 17.1 bits;  conditional E-value: 1.2e-06
   TIGR03197  3 avIGaGiAgaalalsLarrGvqvtllek 30
                +++GaG Ag+ala +La +G  v l+e+
  MMETSP1137-20121227|4265_1 15 VIVGAGAAGCALAARLALAGNYVILFEE 42
                79************************97 PP

>> TIGR02734  crtI_fam: phytoene desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0   1.5e-06   0.00061       2      29 ..      15      42 ..      14      81 .. 0.91

  Alignments for each domain:
  == domain 1    score: 16.4 bits;  conditional E-value: 1.5e-06
   TIGR02734  2 vViGaGlgGLAlAirLaaaGievtvlek 29
                v++GaG++G AlA+rLa aG  v ++e+
  MMETSP1137-20121227|4265_1 15 VIVGAGAAGCALAARLALAGNYVILFEE 42
                79************************97 PP

>> TIGR01790  carotene-cycl: lycopene cyclase family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.1   1.7e-05    0.0068       3      36 ..      15      48 ..      13      52 .. 0.90

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 1.7e-05
   TIGR01790  3 iviGgGlAglaiAlelakpglrvqlieaapklpf 36
                +++G+G Ag+a+A++la +g  v l e  p++ f
  MMETSP1137-20121227|4265_1 15 VIVGAGAAGCALAARLALAGNYVILFEEGPDHNF 48
                89***************99999999999988876 PP

>> TIGR00551  nadB: L-aspartate oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.2   0.0    0.0018      0.74       5      30 ..      14      40 ..      11      48 .. 0.81
   2 !    6.3   0.3    0.0017      0.69      95     166 ..     220     296 ..     206     299 .. 0.71

  Alignments for each domain:
  == domain 1    score: 6.2 bits;  conditional E-value: 0.0018
   TIGR00551  5 vvviGsGaagLsaalalaekyr.vvvl 30
                 v++G+Gaag ++a++la +++ v++ 
  MMETSP1137-20121227|4265_1 14 YVIVGAGAAGCALAARLALAGNyVILF 40
                58*************999999855554 PP

  == domain 2    score: 6.3 bits;  conditional E-value: 0.0017
   TIGR00551  95 GvsfdrneqgslaltregghsrrRi..lhaa.datGrevist...LlkkakaepkveilerevaldllietgrvvGvl 166
                 G++   + q++ a+  e++  r+ +  l ++ da Gr++  +   L+ +++a  + ++++++ ++++l+e++r +Gv 
  MMETSP1137-20121227|4265_1 220 GAEAHAEAQAEAAE-IEAAATRQVVsrLEVTiDANGRRISAAsafLTPQVRALHNFQLITGAAVTRVLMEGNRATGVA 296
                 44444444544444.66666665542234446*****9975333399*****************************96 PP

>> TIGR00275  TIGR00275: flavoprotein, HI0933 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.8   0.2   2.1e-05    0.0086       2      30 ..      15      43 ..      14      46 .. 0.93

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 2.1e-05
   TIGR00275  2 iiiGgGaaGlmaAitaaeegakVlllEkn 30
                +i+G+GaaG   A+++a +g+ V+l+E+ 
  MMETSP1137-20121227|4265_1 15 VIVGAGAAGCALAARLALAGNYVILFEEG 43
                8**************************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (300 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       213  (0.0519259); expected 82.0 (0.02)
Passed bias filter:                      145  (0.0353486); expected 82.0 (0.02)
Passed Vit filter:                        53  (0.0129205); expected 4.1 (0.001)
Passed Fwd filter:                        10  (0.00243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.36u 0.16s 00:00:00.52 Elapsed: 00:00:00.51
# Mc/sec: 776.41
//
Query:       MMETSP1137-20121227|4266_1  [L=170]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (170 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        81  (0.0197465); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.16s 00:00:00.34 Elapsed: 00:00:00.28
# Mc/sec: 773.73
//
Query:       MMETSP1137-20121227|4267_1  [L=485]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (485 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       202  (0.0492443); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.15s 00:00:00.50 Elapsed: 00:00:00.45
# Mc/sec: 1422.55
//
Query:       MMETSP1137-20121227|4268_1  [L=162]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      3e-08   31.2   0.0    4.5e-08   30.6   0.0    1.3  1  TIGR02008 fdx_plant: ferredoxin [2Fe-2S]
    4.2e-05   20.3   0.2    5.2e-05   20.0   0.1    1.3  1  TIGR02160 PA_CoA_Oxy5: phenylacetate-CoA oxygenase/reductase, PaaK subunit


Domain annotation for each model (and alignments):
>> TIGR02008  fdx_plant: ferredoxin [2Fe-2S]
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.6   0.0   2.2e-11   4.5e-08      13      93 ..      32     116 ..      21     120 .. 0.82

  Alignments for each domain:
  == domain 1    score: 30.6 bits;  conditional E-value: 2.2e-11
   TIGR02008  13 seetievpddeyildaaeeeGidlpyscraGacstcaGkvkeGt...vdqsdqsfldddqleegyvltcvaypts.dvkiethke 93 
                 + +++ vp+ + +l a e +G+     cr G c +ca ++ +G+   +   d++ l  +  e+g+vl c ay     ++ie   e
  MMETSP1137-20121227|4268_1  32 QAHVLRVPEGQPVLLALEAAGLLPGSDCRRGNCLSCAARIINGApfsLRVRDNTALCSEAHESGFVLLCSAYVCGkGLEIEVDME 116
                 478999****************66677***************964448999*********************7641466666655 PP

>> TIGR02160  PA_CoA_Oxy5: phenylacetate-CoA oxygenase/reductase, PaaK subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   0.1   2.5e-08   5.2e-05     289     351 ..      47     113 ..       4     114 .. 0.82

  Alignments for each domain:
  == domain 1    score: 20.0 bits;  conditional E-value: 2.5e-08
   TIGR02160 289 alraradlPfa.ckgGvcgtcrakvleG...kvemeknyalepdevdaGyvltcqarPlsdklvvdy 351
                 al a   lP + c+ G c  c a++++G   +++++ n al ++  ++G+vl c a+  ++ l ++ 
  MMETSP1137-20121227|4268_1  47 ALEAAGLLPGSdCRRGNCLSCAARIINGapfSLRVRDNTALCSEAHESGFVLLCSAYVCGKGLEIEV 113
                 455555566433****************555589**********************99888777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (162 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        89  (0.0216967); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.17u 0.15s 00:00:00.32 Elapsed: 00:00:00.35
# Mc/sec: 610.92
//
Query:       MMETSP1137-20121227|4269_1  [L=813]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-05   23.4   0.0    0.00011   20.5   0.0    2.4  2  TIGR01444 fkbM_fam: methyltransferase, FkbM family


Domain annotation for each model (and alignments):
>> TIGR01444  fkbM_fam: methyltransferase, FkbM family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   0.0   2.8e-08   0.00011      45     143 .]     169     270 ..     151     270 .. 0.73
   2 ?   -0.4   0.0     0.075   3.1e+02      54     105 ..     701     752 ..     690     757 .. 0.85

  Alignments for each domain:
  == domain 1    score: 20.5 bits;  conditional E-value: 2.8e-08
   TIGR01444  45 nnlknvkllnaAvgdreg....eleftvsddatgnsslaadselaeeseieVevvtlddlveeaglekvdllKiDvEGaEleVLrgl.aetleekvpaivlevh 143
                 +n  nv + + A+g r+      lef  s+  ++++++  d     +++++ + +tl +l+++ +    +l+K+DvE  E e L  + a+ ++++v+++v+e+h
  MMETSP1137-20121227|4269_1 169 HNPGNVAFAPIALGPRDAtvpePLEFGLSWRMGRKQTITGDI--RPSDQRTWQQRTLGSLMDAGKKRILELVKMDVEYSEWEALLAAsANGTLRHVEQLVIEMH 270
                 555556666777777765444445555554333333333333..33335568999*********99999*********************************98 PP

  == domain 2    score: -0.4 bits;  conditional E-value: 0.075
   TIGR01444  54 naAvgdregeleftvsddatgnsslaadselaeeseieVevvtlddlveeag 105
                  aA++  +  +++++++ ++g + + ++ + a ++e+ V vv l+dl  ++ 
  MMETSP1137-20121227|4269_1 701 AAAASTAASAAQVHHPSARNGLHDWLNRISIALATEVGVGVVDLSDLTLSHP 752
                 57888888899999999999999999999888888999********998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (813 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       109  (0.0265724); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.14s 00:00:00.64 Elapsed: 00:00:00.66
# Mc/sec: 1625.87
//
Query:       MMETSP1137-20121227|4270_1  [L=91]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (91 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.13s 00:00:00.28 Elapsed: 00:00:00.34
# Mc/sec: 353.26
//
Query:       MMETSP1137-20121227|4272_1  [L=170]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (170 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        95  (0.0231594); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.15s 00:00:00.32 Elapsed: 00:00:00.60
# Mc/sec: 373.97
//
Query:       MMETSP1137-20121227|4273_1  [L=345]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (345 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        56  (0.0136519); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.13s 00:00:00.38 Elapsed: 00:00:00.40
# Mc/sec: 1138.41
//
Query:       MMETSP1137-20121227|4274_1  [L=301]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.8e-11   41.4   0.0    3.1e-07   27.4   0.0    2.3  2  TIGR01302 IMP_dehydrog: inosine-5'-monophosphate dehydrogenase


Domain annotation for each model (and alignments):
>> TIGR01302  IMP_dehydrog: inosine-5'-monophosphate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.4   0.0   7.5e-11   3.1e-07     111     208 ..      64     164 ..      42     185 .. 0.73
   2 !   11.6   0.0   4.9e-06      0.02      95     197 ..     188     292 ..     181     299 .. 0.70

  Alignments for each domain:
  == domain 1    score: 27.4 bits;  conditional E-value: 7.5e-11
   TIGR01302 111 isgvpvvedgkeegklvGivtkkdlr....fv..kdkskkvsevmt.keevitvkeeidleeaeevleekkieklpvvdkegelvglvtvkdiekakefpkaskd 208
                  sg ++v++g+e   + Gi+t++d+     f+    +  kvsevmt +++++t++ + +l++  + ++     +lp+++  +++ ++++++di ++         
  MMETSP1137-20121227|4274_1  64 RSGSLIVKQGDE---MAGIITERDVLeklpFElgASRRLKVSEVMTpRSSLVTAPPSFTLDQCVQAMQAGTFRHLPIMQG-EQVKAVISMRDIAQHVAAALVKMP 164
                 478899999776...79******98522223311455667*************************************976.5799********987665544443 PP

  == domain 2    score: 11.6 bits;  conditional E-value: 4.9e-06
   TIGR01302  95 PettvedvlelkekkgisgvpvvedgkeegklvGivtkkdlrfvk....d...kskkvsevmtkeevit.vkeeidleeaeevleekkieklpvvdkegelvglvtvkdie 197
                   + v ++ el++ k+  +v+v +  ++     Gi+t++d+        +   ++ +v+e+mt   ++  v+    + +  +++      +lpv + +g++vg+++++di 
  MMETSP1137-20121227|4274_1 188 ASQSVGEAVELMRAKKTGSVLVNSG-DT----YGIITERDFLTKVavydEfdpHNIPVTEIMTAPPLVKsVAPTGRIADCLALMVAGGFRHLPVAE-KGKTVGVISMRDIL 292
                 5678889999999988777776554.43....6999998865332111121114556999999666655044555789999999999999999865.68899999999996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (301 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       150  (0.0365675); expected 82.0 (0.02)
Passed bias filter:                      111  (0.02706); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.27u 0.16s 00:00:00.43 Elapsed: 00:00:00.38
# Mc/sec: 1045.49
//
Query:       MMETSP1137-20121227|4275_1  [L=366]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.048   11.2   0.0      0.088   10.4   0.0    1.3  1  TIGR00608 radc: DNA repair protein RadC


Domain annotation for each model (and alignments):
>> TIGR00608  radc: DNA repair protein RadC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   2.2e-05     0.088     161     182 ..     275     296 ..     262     302 .. 0.87

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 2.2e-05
   TIGR00608 161 aalilaHnHPsGepePskeDie 182
                 +al l+HnHP  +p Ps+e  +
  MMETSP1137-20121227|4275_1 275 SALALVHNHPLRQPAPSEEGWA 296
                 7899*************99665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (366 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        46  (0.011214); expected 82.0 (0.02)
Passed bias filter:                       41  (0.00999512); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.26u 0.16s 00:00:00.42 Elapsed: 00:00:00.33
# Mc/sec: 1463.88
//
Query:       MMETSP1137-20121227|4276_1  [L=627]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.6e-05   20.1   0.0      0.052   10.3   0.0    2.2  2  TIGR02037 degP_htrA_DO: peptidase Do
     0.0058   13.6   0.0       0.65    6.9   0.0    2.1  2  TIGR02038 protease_degS: periplasmic serine peptidase DegS


Domain annotation for each model (and alignments):
>> TIGR02037  degP_htrA_DO: peptidase Do
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.3   0.0   2.6e-05     0.052      59      84 ..     338     363 ..     331     367 .. 0.89
   2 !    7.4   0.0   0.00019      0.38     170     196 ..     493     519 ..     481     527 .. 0.92

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 2.6e-05
   TIGR02037  59 eslGSGviisadgyvlTNnHvvdgak 84 
                 +  GSG+ ++++g+ lT  Hvv++++
  MMETSP1137-20121227|4276_1 338 TLAGSGFFVHSSGLLLTCDHVVEEMD 363
                 678********************987 PP

  == domain 2    score: 7.4 bits;  conditional E-value: 0.00019
   TIGR02037 170 eFIQtDaaiNpGNSGGpLvnlkGeviG 196
                  F+ t a +  G SGGp+++ +G+v+G
  MMETSP1137-20121227|4276_1 493 GFVLTTADVSAGHSGGPVIDGAGRVLG 519
                 589999*******************99 PP

>> TIGR02038  protease_degS: periplasmic serine peptidase DegS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.4   0.0    0.0018       3.8      80     107 ..     341     368 ..     335     384 .. 0.84
   2 !    6.9   0.0   0.00032      0.65     187     218 ..     493     524 ..     477     547 .. 0.87

  Alignments for each domain:
  == domain 1    score: 4.4 bits;  conditional E-value: 0.0018
   TIGR02038  80 GsGvimskeGyiltnkhvikkadqivva 107
                 GsG  +  +G +lt  hv+++ d  + a
  MMETSP1137-20121227|4276_1 341 GSGFFVHSSGLLLTCDHVVEEMDSRMAA 368
                 9*********************987766 PP

  == domain 2    score: 6.9 bits;  conditional E-value: 0.00032
   TIGR02038 187 nflqtdaainaGnsGGalvnsaGelvGintls 218
                  f+ t a + aG sGG +++ aG ++G +   
  MMETSP1137-20121227|4276_1 493 GFVLTTADVSAGHSGGPVIDGAGRVLGWSYRN 524
                 5999**********************987655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (627 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       107  (0.0260848); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.14s 00:00:00.58 Elapsed: 00:00:00.57
# Mc/sec: 1426.85
//
Query:       MMETSP1137-20121227|4277_1  [L=127]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (127 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        72  (0.0175524); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.16s 00:00:00.31 Elapsed: 00:00:00.25
# Mc/sec: 670.50
//
Query:       MMETSP1137-20121227|4278_1  [L=55]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        37  (0.00901999); expected 82.0 (0.02)
Passed bias filter:                       33  (0.00804486); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.15s 00:00:00.26 Elapsed: 00:00:00.26
# Mc/sec: 279.21
//
Query:       MMETSP1137-20121227|4279_1  [L=447]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (447 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        84  (0.0204778); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.19s 00:00:00.48 Elapsed: 00:00:00.43
# Mc/sec: 1372.07
//
Query:       MMETSP1137-20121227|4280_1  [L=1900]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.6e-06   23.6   0.0    1.9e-05   22.0   0.0    1.7  2  TIGR03864 PQQ_ABC_ATP: ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system
     0.0031   15.0   0.0     0.0077   13.8   0.0    1.6  1  TIGR01189 ccmA: heme ABC exporter, ATP-binding protein CcmA
     0.0043   14.4   0.0      0.009   13.3   0.0    1.4  1  TIGR03608 L_ocin_972_ABC: putative bacteriocin export ABC transporter, lactococcin 972 group
     0.0044   14.3   0.5      0.019   12.3   0.0    2.2  2  TIGR01166 cbiO: cobalt ABC transporter, ATP-binding protein
  ------ inclusion threshold ------
      0.037   11.3   0.0      0.095    9.9   0.0    1.6  1  TIGR02315 ABC_phnC: phosphonate ABC transporter, ATP-binding protein
      0.039   11.1   0.0      0.074   10.1   0.0    1.4  1  TIGR01188 drrA: daunorubicin resistance ABC transporter, ATP-binding protein
       0.23    9.8   5.5        1.4    7.3   0.1    4.0  4  TIGR01841 phasin: phasin family protein
       0.81    4.9   0.0        1.2    4.4   0.0    1.1  1  TIGR00956 3a01205: pleiotropic drug resistance family protein


Domain annotation for each model (and alignments):
>> TIGR03864  PQQ_ABC_ATP: ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.0   0.0   3.8e-08   1.9e-05       8      65 ..     730     787 ..     726     804 .. 0.86
   2 ?   -3.6   0.0       2.6   1.3e+03      34      66 ..    1524    1557 ..    1518    1566 .. 0.70

  Alignments for each domain:
  == domain 1    score: 22.0 bits;  conditional E-value: 3.8e-08
   TIGR03864   8 sfaygkrralddvsltvakgefvaLLGpnGaGkstLfslltrLyeakegeikvaGldl 65 
                 s  + k+ra  + +++  +ge ++LLG+nGaGk+ L++ll  L   +e++ + + +d+
  MMETSP1137-20121227|4280_1 730 SDDFKKKRAELERAFEFCSGESTVLLGMNGAGKTSLINLLHLLTCIDESDYRAVPADY 787
                 66788999999999**************************999999888877666665 PP

  == domain 2    score: -3.6 bits;  conditional E-value: 2.6
   TIGR03864   34 GpnGaGkstLf.slltrLyeakegeikvaGldlr 66  
                     G G+  L+ + lt  +e  e++i+v G+  +
  MMETSP1137-20121227|4280_1 1524 TKRGRGRKCLIrKWLTHFFEYVEAHIHVDGQPSS 1557
                  5567777777634788888888888888887654 PP

>> TIGR01189  ccmA: heme ABC exporter, ATP-binding protein CcmA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.0   1.5e-05    0.0077      20      49 ..     743     772 ..     734     792 .. 0.86

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 1.5e-05
   TIGR01189  20 sfelaaGealvveGpnGiGKttLLRilaGL 49 
                  fe+ +Ge  v+ G nG+GKt+L+ +l  L
  MMETSP1137-20121227|4280_1 743 AFEFCSGESTVLLGMNGAGKTSLINLLHLL 772
                 5999*******************9888655 PP

>> TIGR03608  L_ocin_972_ABC: putative bacteriocin export ABC transporter, lactococcin 972 group
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   0.0   1.8e-05     0.009       7      54 ..     732     779 ..     728     797 .. 0.83

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 1.8e-05
   TIGR03608   7 kfkdkeilkklslkiekGelvaivGesGsGKstlLnilgllekkdsgk 54 
                  fk+k+   +  +++ +Ge++ ++G  G+GK+ l+n+l ll   d+ +
  MMETSP1137-20121227|4280_1 732 DFKKKRAELERAFEFCSGESTVLLGMNGAGKTSLINLLHLLTCIDESD 779
                 566666666778999***********************9998777665 PP

>> TIGR01166  cbiO: cobalt ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.3   0.0   3.7e-05     0.019      13      38 ..     744     769 ..     735     774 .. 0.88
   2 ?   -1.5   0.0      0.63   3.2e+02     102     136 ..    1232    1266 ..    1219    1319 .. 0.66

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 3.7e-05
   TIGR01166  13 lavergevlallGanGaGkstlllhl 38 
                 +++  ge+++llG nGaGk+ l++ l
  MMETSP1137-20121227|4280_1 744 FEFCSGESTVLLGMNGAGKTSLINLL 769
                 77889*****************9876 PP

  == domain 2    score: -1.5 bits;  conditional E-value: 0.63
   TIGR01166  102 aeverrvrealaavdisgleerpthllsgGekkrv 136 
                   ++++   +al+++  +  +e+   ++s+G +krv
  MMETSP1137-20121227|4280_1 1232 RQMKEFETKALHTLLEDLHAEQRHVVVSQGLRKRV 1266
                  55555556677776666666667777788888887 PP

>> TIGR02315  ABC_phnC: phosphonate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.0   0.00018     0.095      22      58 ..     743     779 ..     729     790 .. 0.82

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 0.00018
   TIGR02315  22 nleikkGelvaviGlsGaGkstllrsinrlveissgs 58 
                  +e+ +Ge ++++G  GaGk+ l+  +  l+ i++++
  MMETSP1137-20121227|4280_1 743 AFEFCSGESTVLLGMNGAGKTSLINLLHLLTCIDESD 779
                 688999******************9999888877765 PP

>> TIGR01188  drrA: daunorubicin resistance ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0   0.00014     0.074      14      43 ..     744     773 ..     732     793 .. 0.81

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 0.00014
   TIGR01188  14 lkveegevfglLGPnGAGKtttikmLttll 43 
                 ++   ge   lLG nGAGKt +i++L  l+
  MMETSP1137-20121227|4280_1 744 FEFCSGESTVLLGMNGAGKTSLINLLHLLT 773
                 55667888889************9987654 PP

>> TIGR01841  phasin: phasin family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.0      0.16        82       6      27 ..     704     725 ..     702     731 .. 0.85
   2 ?   -0.4   0.1       0.7   3.6e+02      10      64 ..     800     852 ..     796     857 .. 0.85
   3 ?   -3.7   0.0       7.1   3.6e+03      30      55 ..    1221    1246 ..    1219    1249 .. 0.70
   4 ?    7.3   0.1    0.0027       1.4      13      51 ..    1485    1523 ..    1481    1526 .. 0.92

  Alignments for each domain:
  == domain 1    score: 1.6 bits;  conditional E-value: 0.16
   TIGR01841   6 erLvklqlqalragldesveas 27 
                  +Lvk+ lq++++ +d+++  s
  MMETSP1137-20121227|4280_1 704 KELVKQCLQLIKKLTDDVAKES 725
                 68***************98765 PP

  == domain 2    score: -0.4 bits;  conditional E-value: 0.7
   TIGR01841  10 klqlqalragldesveaskrlasagdpqellalqtefakpaaeklleysrelyEi 64 
                 +l lqal ++  e v+a+  +  a d++  la +   a++  +k++ ++++l+ +
  MMETSP1137-20121227|4280_1 800 ALSLQALLSSSGEAVAALEAAGVALDLAPSLADPRGKAAD--QKATDEAKQLARV 852
                 577999*********************9999999666666..9999999999865 PP

  == domain 3    score: -3.7 bits;  conditional E-value: 7.1
   TIGR01841   30 lasagdpqellalqtefakpaaekll 55  
                  +++a+++ +l+ + +ef  +a  +ll
  MMETSP1137-20121227|4280_1 1221 VLAARNLDALVRQMKEFETKALHTLL 1246
                  56778888887777777777766666 PP

  == domain 4    score: 7.3 bits;  conditional E-value: 0.0027
   TIGR01841   13 lqalragldesveaskrlasagdpqellalqtefakpaa 51  
                  +q+++++l+ +   +++++++  +  ++++q++ ++++ 
  MMETSP1137-20121227|4280_1 1485 RQLISSSLALVRREWQTVLAPAALNKFVEKQVDALRDVL 1523
                  699******************************999985 PP

>> TIGR00956  3a01205: pleiotropic drug resistance family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   0.0    0.0023       1.2     788     809 ..     748     769 ..     733     774 .. 0.89

  Alignments for each domain:
  == domain 1    score: 4.4 bits;  conditional E-value: 0.0023
   TIGR00956 788 PGkltALmGasGAGkttLlnvL 809
                  G+ t L+G  GAGkt L+n L
  MMETSP1137-20121227|4280_1 748 SGESTVLLGMNGAGKTSLINLL 769
                 5899****************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1900 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       205  (0.0499756); expected 82.0 (0.02)
Passed bias filter:                      154  (0.0375427); expected 82.0 (0.02)
Passed Vit filter:                        58  (0.0141394); expected 4.1 (0.001)
Passed Fwd filter:                         8  (0.00195027); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 1.48u 0.15s 00:00:01.63 Elapsed: 00:00:01.31
# Mc/sec: 1914.35
//
Query:       MMETSP1137-20121227|4281_1  [L=368]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.6e-33  114.1   0.0    2.7e-33  113.3   0.0    1.3  1  TIGR00737 nifR3_yhdG: putative TIM-barrel protein, nifR3 family
    1.1e-07   29.4   0.0    3.7e-07   27.6   0.0    1.8  2  TIGR00742 yjbN: tRNA dihydrouridine synthase A
    4.1e-07   27.2   0.0    0.00043   17.3   0.0    2.1  2  TIGR01037 pyrD_sub1_fam: dihydroorotate dehydrogenase family protein
    0.00014   19.0   0.6    0.00023   18.4   0.4    1.2  1  TIGR03151 enACPred_II: putative enoyl-[acyl-carrier-protein] reductase II
    0.00072   16.8   1.0     0.0017   15.6   0.5    1.7  1  TIGR03572 WbuZ: glycosyl amidation-associated protein WbuZ
     0.0028   14.4   0.6     0.0042   13.8   0.4    1.2  1  TIGR01302 IMP_dehydrog: inosine-5'-monophosphate dehydrogenase
  ------ inclusion threshold ------
      0.026   11.6   0.8      0.092    9.8   0.4    1.8  2  TIGR00735 hisF: imidazoleglycerol phosphate synthase, cyclase subunit


Domain annotation for each model (and alignments):
>> TIGR00737  nifR3_yhdG: putative TIM-barrel protein, nifR3 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  113.3   0.0   4.6e-36   2.7e-33      73     314 ..       3     238 ..       1     241 [. 0.89

  Alignments for each domain:
  == domain 1    score: 113.3 bits;  conditional E-value: 4.6e-36
   TIGR00737  73 dpdvmaeaAkiaeelgadiiDlNmGCPvkkitkkgaGsallkepeliekivkavveavevPVTvKiRiGwdeehinveeaariaedaGaqavalHgRTra..qlyeGeanwdiiarvkqavkiPVignGDitspedAkamLeetgadgvligRgalGkPwlfkeieqylttgklkkaptlaeklaailrhlqlladyyg.eekglreaRKhvawYlkglkkkaalreelakiksvqevkellddf 314
                 dp+v+  aA+  +e+  d +DlN+GCP +   +   G+ ll ep+++ ++v+++ +  +vPVT K+R+            a +++daGa+++ +HgR r   + + G a+w  ia+v++a+++PVi+nG i  ++d  a+Le tga++v+ + g l +P lf + ++  ++g++ ++ +la      + +l++ +d++   +k + +aR h+   l++   + a++ ++ + +s +++ke+++ +
  MMETSP1137-20121227|4281_1   3 DPKVVLRAARH-VEAHVDAVDLNFGCPQNIARRGRYGAFLLDEPDVMVSLVSTLHKELSVPVTAKLRLLPS-------IDAXRLQDAGASVICVHGRRREekKQFVGAADWPAIAAVVDALEVPVIANGGISCAADVAACLEATGAAAVMSSEGLLENPALFCANRHP-QDGRYLDQNELASLYLDECLKLDAHQDDVAlRQKRIAQARSHLFKMLHNGLREPAMCDQMLATTSLNDLKEVVETL 238
                 79999999995.56789***********9999999********************************8432.......2356789***********99862268**********************************************************998776.55666667777777766677788888888779***************************************99876 PP

>> TIGR00742  yjbN: tRNA dihydrouridine synthase A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.6   0.0   6.3e-10   3.7e-07      65     132 ..       3      69 ..       1      85 [. 0.91
   2 ?   -1.4   0.0      0.44   2.6e+02     199     235 ..     120     158 ..     113     176 .. 0.81

  Alignments for each domain:
  == domain 1    score: 27.6 bits;  conditional E-value: 6.3e-10
   TIGR00742  65 dpedlakcaklaeefgydeinlnvGcPsdrvqngnfGaclmanadlvadivkamkeaveiPvtvktri 132
                 dp+ ++++a+ +e+   d ++ln GcP +  + g +Ga l+ ++d +  +v+++++  ++Pvt k r+
  MMETSP1137-20121227|4281_1   3 DPKVVLRAARHVEA-HVDAVDLNFGCPQNIARRGRYGAFLLDEPDVMVSLVSTLHKELSVPVTAKLRL 69 
                 77778888887776.579***********************************************997 PP

  == domain 2    score: -1.4 bits;  conditional E-value: 0.44
   TIGR00742 199 einGGiksleeikkhlsfv..dsvmvGreayenPyllaa 235
                   nGGi    ++ + l+     +vm      enP l++a
  MMETSP1137-20121227|4281_1 120 IANGGISCAADVAACLEATgaAAVMSSEGLLENPALFCA 158
                 469999999999999987622578888999999999865 PP

>> TIGR01037  pyrD_sub1_fam: dihydroorotate dehydrogenase family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.0   7.3e-07   0.00043     109     165 ..      11      68 ..       3      88 .. 0.82
   2 !    7.8   0.0   0.00055      0.32     228     265 ..     110     148 ..     105     176 .. 0.81

  Alignments for each domain:
  == domain 1    score: 17.3 bits;  conditional E-value: 7.3e-07
   TIGR01037 109 aeklekadkyvdaleLnvsCPhvkg....aGieiGqdpelsaevvkavkekvdkPvlakLs 165
                 a+++e    +vda++Ln  CP+  +    +G+ +  +p++++++v+ + +   +Pv+akL 
  MMETSP1137-20121227|4281_1  11 ARHVE---AHVDAVDLNFGCPQNIArrgrYGAFLLDEPDVMVSLVSTLHKELSVPVTAKLR 68 
                 55555...779**********8643335699999*************************95 PP

  == domain 2    score: 7.8 bits;  conditional E-value: 0.00055
   TIGR01037 228 dlykkldiPiiGvGGitsaeDaleflla.GasavqvGta 265
                  +   l++P+i  GGi  a D+   l a Ga av    +
  MMETSP1137-20121227|4281_1 110 AVVDALEVPVIANGGISCAADVAACLEAtGAAAVMSSEG 148
                 577899****************99997658888865555 PP

>> TIGR03151  enACPred_II: putative enoyl-[acyl-carrier-protein] reductase II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.4   3.9e-07   0.00023     122     187 ..      75     143 ..      56     150 .. 0.79

  Alignments for each domain:
  == domain 1    score: 18.4 bits;  conditional E-value: 3.9e-07
   TIGR03151 122 akrleklGadaviaeGm...eaGGhiGelttlalvpqvvdavsiPviaaGGiadgrGlaaal.alGaeav 187
                 a rl+ +Ga  + + G    e    +G  +  + +  vvda+++Pvia GGi+    +aa+l a Ga+av
  MMETSP1137-20121227|4281_1  75 AXRLQDAGASVICVHGRrreEKKQFVG-AADWPAIAAVVDALEVPVIANGGISCAADVAACLeATGAAAV 143
                 678888888888888853323344455.4678999*************************9956788887 PP

>> TIGR03572  WbuZ: glycosyl amidation-associated protein WbuZ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.5   2.9e-06    0.0017     187     227 ..     106     146 ..     101     150 .. 0.89

  Alignments for each domain:
  == domain 1    score: 15.6 bits;  conditional E-value: 2.9e-06
   TIGR03572 187 elvktvskavkiPvialGGagslddlvevvleagasavaaa 227
                   +  v +a+++Pvia+GG++ ++d+++ ++ +ga+av  +
  MMETSP1137-20121227|4281_1 106 PAIAAVVDALEVPVIANGGISCAADVAACLEATGAAAVMSS 146
                 5688999***********************99999999765 PP

>> TIGR01302  IMP_dehydrog: inosine-5'-monophosphate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.4   7.2e-06    0.0042     308     354 ..     100     144 ..      80     156 .. 0.85

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 7.2e-06
   TIGR01302 308 vGvpqitAvakvaeaaaksgipviADGGirysGdivKal.alGadavm 354
                 vG +   A+a v++a     +pviA+GGi+ + d++  l a Ga avm
  MMETSP1137-20121227|4281_1 100 VGAADWPAIAAVVDAL---EVPVIANGGISCAADVAACLeATGAAAVM 144
                 6777777777777665...69*****************9667999999 PP

>> TIGR00735  hisF: imidazoleglycerol phosphate synthase, cyclase subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.0      0.19   1.1e+02      58     102 ..      44      88 ..      41      99 .. 0.84
   2 ?    9.8   0.4   0.00016     0.092     187     228 ..     104     145 ..      75     152 .. 0.77

  Alignments for each domain:
  == domain 1    score: -0.3 bits;  conditional E-value: 0.19
   TIGR00735  58 kretmlevvervaekvfiPltvgGGiksiedvkkllraGadkvsi 102
                 + ++m+++v+   +++ +P+t    +    d+ +l  aGa  + +
  MMETSP1137-20121227|4281_1  44 EPDVMVSLVSTLHKELSVPVTAKLRLLPSIDAXRLQDAGASVICV 88 
                 567999999999*******99988888888888888888887776 PP

  == domain 2    score: 9.8 bits;  conditional E-value: 0.00016
   TIGR00735 187 dlellkkvkeavkiPviasgGaGkaehleeaflkgkadaaLa 228
                 d   + +v +a+++Pvia gG+  a  ++ ++ ++ a a+++
  MMETSP1137-20121227|4281_1 104 DWPAIAAVVDALEVPVIANGGISCAADVAACLEATGAAAVMS 145
                 7888999***************99999998888887777664 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (368 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       175  (0.0426621); expected 82.0 (0.02)
Passed bias filter:                      114  (0.0277913); expected 82.0 (0.02)
Passed Vit filter:                        23  (0.00560702); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.33u 0.16s 00:00:00.49 Elapsed: 00:00:00.42
# Mc/sec: 1156.48
//
Query:       MMETSP1137-20121227|4282_1  [L=188]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (188 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        53  (0.0129205); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.14s 00:00:00.32 Elapsed: 00:00:00.32
# Mc/sec: 775.44
//
Query:       MMETSP1137-20121227|4283_1  [L=378]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0045   14.1   0.0     0.0082   13.2   0.0    1.4  1  TIGR00064 ftsY: signal recognition particle-docking protein FtsY
     0.0065   13.7   0.3      0.012   12.8   0.2    1.4  1  TIGR02770 nickel_nikD: nickel import ATP-binding protein NikD
  ------ inclusion threshold ------
      0.012   13.4   0.1      0.019   12.8   0.1    1.3  1  TIGR03499 FlhF: flagellar biosynthesis protein FlhF
      0.014   12.4   0.0      0.021   11.8   0.0    1.2  1  TIGR01186 proV: glycine betaine/L-proline transport ATP binding subunit
      0.019   11.7   0.0      0.028   11.1   0.0    1.2  1  TIGR00959 ffh: signal recognition particle protein
       0.02   11.7   0.1      0.029   11.2   0.1    1.2  1  TIGR03415 ABC_choXWV_ATP: choline ABC transporter, ATP-binding protein


Domain annotation for each model (and alignments):
>> TIGR00064  ftsY: signal recognition particle-docking protein FtsY
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   0.0   1.2e-05    0.0082      71     103 ..     161     193 ..     113     203 .. 0.72

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 1.2e-05
   TIGR00064  71 kelkeekkpnvillvGvNGvGKTttiaKlakll 103
                 k  +  k+  v++l G+ G+GK tt++Kl ++l
  MMETSP1137-20121227|4283_1 161 KLGDAVKEGCVLVLQGLSGTGKGTTVSKLESVL 193
                 3456678899******************98765 PP

>> TIGR02770  nickel_nikD: nickel import ATP-binding protein NikD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.8   0.2   1.8e-05     0.012       2      48 ..     159     205 ..     158     221 .. 0.88

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 1.8e-05
   TIGR02770   2 vqdvnlslkrgkvlalvGesGsGksltalailglldkeltktsGeil 48 
                 v+++   +k+g vl l G sG+Gk +t + +  +l+  ++ ++G++ 
  MMETSP1137-20121227|4283_1 159 VEKLGDAVKEGCVLVLQGLSGTGKGTTVSKLESVLPRAVSWSNGNVF 205
                 66677789************************************985 PP

>> TIGR03499  FlhF: flagellar biosynthesis protein FlhF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.1   2.8e-05     0.019     150     218 ..     121     189 ..      98     193 .. 0.81

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 2.8e-05
   TIGR03499 150 agvseelarelleklke..kedaeeareklreaLekklsvkkeedeilekggviaLvGptGvGKTTTlAKL 218
                 ag+ e +a+ ++e  +      + ++  k  ++++ ++   ++  ++ ++g v++L G  G GK TT+ KL
  MMETSP1137-20121227|4283_1 121 AGIREAIAKGVVEAEPPvePVCKIDVAGKSADMVAAEI--VEKLGDAVKEGCVLVLQGLSGTGKGTTVSKL 189
                 66677777777776666555566777778888888888..666677778888******************9 PP

>> TIGR01186  proV: glycine betaine/L-proline transport ATP binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0     3e-05     0.021      10      51 ..     160     205 ..     153     211 .. 0.77

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 3e-05
   TIGR01186  10 ndvdleieeGeiiviiGlsGsGkstlvr....llnrliePtaGkil 51 
                 +++  +++eG ++v+ GlsG+Gk t+v     +l r +  ++G+++
  MMETSP1137-20121227|4283_1 160 EKLGDAVKEGCVLVLQGLSGTGKGTTVSklesVLPRAVSWSNGNVF 205
                 55556899****************9996222245566777777776 PP

>> TIGR00959  ffh: signal recognition particle protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   4.1e-05     0.028      68     122 ..     136     192 ..     120     198 .. 0.74

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 4.1e-05
   TIGR00959  68 spkqqliki.vkeeLvallgee.saelklaekkpavillvGLqGsGKtttaaKlakk 122
                  p + + ki v  + ++++++e  ++l  a k+  v++l GL G+GK tt++Kl + 
  MMETSP1137-20121227|4283_1 136 PPVEPVCKIdVAGKSADMVAAEiVEKLGDAVKEGCVLVLQGLSGTGKGTTVSKLESV 192
                 55555555555556666777776777888889999******************9765 PP

>> TIGR03415  ABC_choXWV_ATP: choline ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.1   4.2e-05     0.029      40      68 ..     159     187 ..     145     218 .. 0.81

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 4.2e-05
   TIGR03415  40 vadasldveeGeilvlmGlsGsGkssllr 68 
                 v++    v+eG +lvl GlsG+Gk + + 
  MMETSP1137-20121227|4283_1 159 VEKLGDAVKEGCVLVLQGLSGTGKGTTVS 187
                 55666689****************99654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (378 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       199  (0.0485129); expected 82.0 (0.02)
Passed bias filter:                      180  (0.043881); expected 82.0 (0.02)
Passed Vit filter:                        48  (0.0117016); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.36u 0.20s 00:00:00.56 Elapsed: 00:00:00.48
# Mc/sec: 1039.41
//
Query:       MMETSP1137-20121227|4284_1  [L=465]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (465 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        69  (0.0168211); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.16s 00:00:00.48 Elapsed: 00:00:00.40
# Mc/sec: 1534.37
//
Query:       MMETSP1137-20121227|4285_1  [L=293]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.5e-62  207.4   2.4      5e-36  121.8   0.1    2.2  2  TIGR00980 3a0801so1tim17: mitochondrial import inner membrane translocase subunit tim17
    6.8e-09   33.2   0.2    1.2e-07   29.2   0.0    2.1  2  TIGR00983 3a0801s02tim23: mitochondrial import inner membrane translocase subunit


Domain annotation for each model (and alignments):
>> TIGR00980  3a0801so1tim17: mitochondrial import inner membrane translocase subunit tim17
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.0   0.2   2.5e-28     5e-25       5      62 ..       5      62 ..       1      75 [. 0.93
   2 !  121.8   0.1   2.4e-39     5e-36      59     143 ..     102     186 ..      66     214 .. 0.82

  Alignments for each domain:
  == domain 1    score: 86.0 bits;  conditional E-value: 2.5e-28
   TIGR00980  5 trePcPyrilddiGgafamGtiGGaifqaikGfrnspkGeklvgalaaiktrapvlGg 62
                 r+PcP+rilddiGgafamG+iGG+i++++kG rnsp+Ge+l+g+++a+++rap+lGg
  MMETSP1137-20121227|4285_1  5 ERDPCPHRILDDIGGAFAMGAIGGGIWNSVKGARNSPRGERLIGSVQAVRARAPILGG 62
                7********************************************************8 PP

  == domain 2    score: 121.8 bits;  conditional E-value: 2.4e-39
   TIGR00980  59 vlGgnfavwGGlfstidcalvavrkkedPwnsivsGaltGallavrsGpkamagsailgavllalieGvGlvltrfaaaqakpva 143
                  + gnfavwGGlfs +dc+lv +r+kedPwnsi+sGaltG++la+r+G++a   sa++g+vlla+ieG+ + ltr++a + +p  
  MMETSP1137-20121227|4285_1 102 PIAGNFAVWGGLFSMFDCTLVWLRRKEDPWNSITSGALTGGVLAARGGWRAASRSAAVGGVLLAMIEGLNIFLTRMMADTPPPPY 186
                 4679*************************************************************************99876543 PP

>> TIGR00983  3a0801s02tim23: mitochondrial import inner membrane translocase subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.1     0.015        31     110     144 ..      15      49 ..      11      54 .. 0.75
   2 !   29.2   0.0   5.7e-11   1.2e-07      90     147 ..     108     165 ..      92     167 .. 0.89

  Alignments for each domain:
  == domain 1    score: 1.9 bits;  conditional E-value: 0.015
   TIGR00983 110 edvansvaAGaltGalykstrGlraiavssalvat 144
                 +d  ++ a Ga+ G ++ s +G r   ++  l + 
  MMETSP1137-20121227|4285_1  15 DDIGGAFAMGAIGGGIWNSVKGARNSPRGERLIGS 49 
                 66777888899999999999999888777766655 PP

  == domain 2    score: 29.2 bits;  conditional E-value: 5.7e-11
   TIGR00983  90 GilaLvYnainslieaargkedvansvaAGaltGalykstrGlraiavssalvataag 147
                  + + +++ ++ +++ +r ked +ns++ GaltG +  + +G ra+++s+a+++++ +
  MMETSP1137-20121227|4285_1 108 AVWGGLFSMFDCTLVWLRRKEDPWNSITSGALTGGVLAARGGWRAASRSAAVGGVLLA 165
                 45666899********************************************998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (293 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        58  (0.0141394); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.27u 0.16s 00:00:00.43 Elapsed: 00:00:00.35
# Mc/sec: 1104.94
//
Query:       MMETSP1137-20121227|4287_1  [L=207]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0095   13.4   0.0      0.014   12.9   0.0    1.2  1  TIGR01738 bioH: putative pimeloyl-BioC--CoA transferase BioH
  ------ inclusion threshold ------
      0.044   11.0   0.0      0.073   10.3   0.0    1.3  1  TIGR02427 protocat_pcaD: 3-oxoadipate enol-lactonase


Domain annotation for each model (and alignments):
>> TIGR01738  bioH: putative pimeloyl-BioC--CoA transferase BioH
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.9   0.0   6.8e-06     0.014     182     212 ..      49      79 ..      33      95 .. 0.84

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 6.8e-06
   TIGR01738 182 ralqkisvPvLrlyGqkDalvPakvvealdk 212
                 ++++++s P+L+l G  D++vP++ +  +++
  MMETSP1137-20121227|4287_1  49 KKVEQLSCPILLLQGDEDKIVPPNQATLMHE 79 
                 468899*****************99887765 PP

>> TIGR02427  protocat_pcaD: 3-oxoadipate enol-lactonase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   3.6e-05     0.073     187     215 ..      49      77 ..      39      84 .. 0.87

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 3.6e-05
   TIGR02427 187 erleeiavPtlviaGdeDgstPpelvrei 215
                 +++e+++ P+l++ GdeD   Pp+++  +
  MMETSP1137-20121227|4287_1  49 KKVEQLSCPILLLQGDEDKIVPPNQATLM 77 
                 57899******************998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (207 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        74  (0.01804); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.20u 0.17s 00:00:00.37 Elapsed: 00:00:00.88
# Mc/sec: 310.47
//
Query:       MMETSP1137-20121227|4288_1  [L=408]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.3e-13   47.5   7.4      5e-13   47.0   5.2    1.2  1  TIGR01476 chlor_syn_BchG: bacteriochlorophyll/chlorophyll synthetase
    7.9e-11   39.9   4.9    9.3e-11   39.7   2.9    1.4  1  TIGR02056 ChlG: chlorophyll synthase ChlG


Domain annotation for each model (and alignments):
>> TIGR01476  chlor_syn_BchG: bacteriochlorophyll/chlorophyll synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.0   5.2   2.4e-16     5e-13      49     223 ..     165     347 ..     131     378 .. 0.76

  Alignments for each domain:
  == domain 1    score: 47.0 bits;  conditional E-value: 2.4e-16
   TIGR01476  49 lltGlsqavndyaDrdvDainePqrpiPsGaislrevlililvltvlglavalvlgrwvivlltvlGvvlaliyslePiklkrngWlGnalvalsyvgl....aWlaGhavfaaltleivvvaLl...yslaaaGilvlnDfksveGDrklGlrslpvalGvkvaakla.vvvidvaqilvig 223
                 l   +   +n+ +D ++D +n+P  pi +G+++ + +  l++  ++ gla+  ++ + +i+ l ++G v+  +ys++Pi+lkr        +a +   l     ++a   +++   + +  va+l    ++ a  i+v  D+  v GDrk G+ +++  +G+k+ a  a  v++  + +++++
  MMETSP1137-20121227|4288_1 165 LGNLFIVGINQIYDVEIDVVNKPFLPIAAGIMTPQLAWALVVASGLGGLAIVKTFFSTLIFRLYLFGTVIGGLYSVPPIQLKRFPLAAGLTIACCRGFLlnfgVYYATREALGQAFVWSAPVAFLarfMTVYASVIAVTKDLADVAGDRKGGIETFASRMGTKRVAAGAtAVLLLNYAAAIAT 347
                 33335567999*******************998887777777778889**9999999999**********************98877777777775444223336677777777555555555541116778999**************************9876654303333334444444 PP

>> TIGR02056  ChlG: chlorophyll synthase ChlG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.7   2.9   4.5e-14   9.3e-11      70     230 ..     170     331 ..     155     362 .. 0.72

  Alignments for each domain:
  == domain 1    score: 39.7 bits;  conditional E-value: 4.5e-14
   TIGR02056  70 tqtlndfydreidainepyrpipsgaisvpevvtqvvl.lllaglavafildlwaghetptvtvlalfgsllayiysapplklkqngwlgnyalgasyial....pwwagq.alfgeltpd..vvvltllyslaglgiaivndfksvegdralglqslpvafgietakw 230
                    +n+ yd eid +n+p+ pi +g +  p++   +v+   l+gla+  ++          ++ l lfg+++  +ys pp++lk+       ++ +    l     ++a + al   + +   v+ l+ + ++    ia+ +d+  v gdr+ g++++   +g++  + 
  MMETSP1137-20121227|4288_1 170 IVGINQIYDVEIDVVNKPFLPIAAGIM-TPQLAWALVVaSGLGGLAIVKTF------FSTLIFRLYLFGTVIGGLYSVPPIQLKRFPLAAGLTIACCRGFLlnfgVYYATReALGQAFVWSapVAFLARFMTVYASVIAVTKDLADVAGDRKGGIETFASRMGTKRVAA 331
                 5579*******************9955.67776554441456777666553......3456899********************99887776665543222111245666515555566653378888899999999**********************9999975433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (408 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       152  (0.0370551); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.33u 0.18s 00:00:00.51 Elapsed: 00:00:00.36
# Mc/sec: 1495.88
//
Query:       MMETSP1137-20121227|4291_1  [L=610]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (610 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       116  (0.0282789); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.18s 00:00:00.58 Elapsed: 00:00:00.57
# Mc/sec: 1388.16
//
Query:       MMETSP1137-20121227|4292_1  [L=206]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (206 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       144  (0.0351048); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.16s 00:00:00.34 Elapsed: 00:00:00.31
# Mc/sec: 877.09
//
Query:       MMETSP1137-20121227|4293_1  [L=378]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.83    7.8   5.5          1    7.5   0.8    2.8  3  TIGR01031 rpmF_bact: ribosomal protein L32


Domain annotation for each model (and alignments):
>> TIGR01031  rpmF_bact: ribosomal protein L32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.0     0.038   1.5e+02      11      22 ..      80      89 ..      78     106 .. 0.79
   2 ?   -2.1   0.0      0.26   1.1e+03      35      43 ..     131     139 ..     123     142 .. 0.76
   3 ?    7.5   0.8   0.00025         1       9      43 ..     329     366 ..     325     372 .. 0.83

  Alignments for each domain:
  == domain 1    score: 0.6 bits;  conditional E-value: 0.038
   TIGR01031 11 rkrkRRshdakl 22
                r++kRR++  k+
  MMETSP1137-20121227|4293_1 80 RTAKRRAS--KA 89
                89999999..34 PP

  == domain 2    score: -2.1 bits;  conditional E-value: 0.26
   TIGR01031  35 elklpHrvc 43 
                  lk+pH++ 
  MMETSP1137-20121227|4293_1 131 TLKIPHHLK 139
                 5799**975 PP

  == domain 3    score: 7.5 bits;  conditional E-value: 0.00025
   TIGR01031   9 ksrkrkRRshdaklkaptlvecpncGelk...lpHrvc 43 
                  +r  +R ++ + ++++++ +  ncGe +   +pH++ 
  MMETSP1137-20121227|4293_1 329 QTRSLSRGAQLMGTTKSGTKARANCGEITsdlRPHHAR 366
                 467779*********************97554688875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (378 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       107  (0.0260848); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.28u 0.12s 00:00:00.40 Elapsed: 00:00:00.51
# Mc/sec: 978.27
//
Query:       MMETSP1137-20121227|4294_1  [L=297]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.014   12.3   0.4       0.02   11.8   0.3    1.2  1  TIGR00883 2A0106: MFS transporter, metabolite:H+ symporter (MHS) family protein


Domain annotation for each model (and alignments):
>> TIGR00883  2A0106: MFS transporter, metabolite:H+ symporter (MHS) family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.3   4.9e-06      0.02      35      84 ..     232     276 ..     221     282 .. 0.79

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 4.9e-06
   TIGR00883  35 latlatfavgFlaRplGaivfGalgDrlGRkktLvvtlllMgigtvligl 84 
                 + ++++f     +  +G ++fG+l D lG ++++ v+ l  +igt+++g+
  MMETSP1137-20121227|4294_1 232 ISAFSIF-----TSDFGMVLFGELSDWLGPRSAFGVGALFVSIGTLMLGV 276
                 3334444.....445688******************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (297 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        85  (0.0207216); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.23u 0.15s 00:00:00.38 Elapsed: 00:00:00.39
# Mc/sec: 1005.15
//
Query:       MMETSP1137-20121227|4295_1  [L=271]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (271 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        63  (0.0153584); expected 82.0 (0.02)
Passed bias filter:                       44  (0.0107265); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.09s 00:00:00.31 Elapsed: 00:00:00.97
# Mc/sec: 368.75
//
Query:       MMETSP1137-20121227|4296_1  [L=312]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (312 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        87  (0.0212092); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.10s 00:00:00.35 Elapsed: 00:00:00.47
# Mc/sec: 876.18
//
Query:       MMETSP1137-20121227|4297_1  [L=191]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (191 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.11s 00:00:00.30 Elapsed: 00:00:00.36
# Mc/sec: 700.28
//
Query:       MMETSP1137-20121227|4298_1  [L=192]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (192 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        45  (0.0109703); expected 82.0 (0.02)
Passed bias filter:                       41  (0.00999512); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.16s 00:00:00.34 Elapsed: 00:00:01.14
# Mc/sec: 220.36
//
Query:       MMETSP1137-20121227|4299_1  [L=178]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-57  192.3   0.0    1.5e-57  192.1   0.0    1.0  1  TIGR03598 GTPase_YsxC: ribosome biogenesis GTP-binding protein YsxC
    1.5e-16   58.2   0.1    3.1e-16   57.2   0.1    1.4  1  TIGR03594 GTPase_EngA: ribosome-associated GTPase EngA
    2.2e-16   57.5   0.0    2.4e-16   57.4   0.0    1.0  1  TIGR03918 GTP_HydF: [FeFe] hydrogenase H-cluster maturation GTPase HydF
    5.6e-12   43.0   0.0    6.2e-12   42.8   0.0    1.0  1  TIGR00437 feoB: ferrous iron transport protein B
    3.6e-11   40.8   0.2      2e-08   31.7   0.0    2.0  2  TIGR03596 GTPase_YlqF: ribosome biogenesis GTP-binding protein YlqF
    6.5e-10   36.6   0.0    8.1e-10   36.3   0.0    1.1  1  TIGR00436 era: GTP-binding protein Era
    1.9e-09   35.3   0.1    0.00016   19.2   0.0    2.0  2  TIGR00157 TIGR00157: ribosome small subunit-dependent GTPase A
      2e-09   34.9   0.0    5.2e-06   23.7   0.0    2.0  2  TIGR03597 GTPase_YqeH: ribosome biogenesis GTPase YqeH
      4e-09   34.3   0.0      5e-09   34.0   0.0    1.1  1  TIGR00231 small_GTP: small GTP-binding protein domain
    2.2e-07   28.2   1.2      4e-07   27.3   0.8    1.4  1  TIGR00450 mnmE_trmE_thdF: tRNA modification GTPase TrmE
    1.1e-06   25.6   0.1    5.2e-06   23.4   0.0    1.8  1  TIGR03156 GTP_HflX: GTP-binding protein HflX
    1.7e-06   25.1   0.0    2.6e-06   24.5   0.0    1.3  1  TIGR02729 Obg_CgtA: Obg family GTPase CgtA
    0.00048   16.4   0.0    0.00061   16.1   0.0    1.1  1  TIGR01393 lepA: GTP-binding protein LepA
    0.00048   16.8   0.0    0.00065   16.3   0.0    1.1  1  TIGR00475 selB: selenocysteine-specific translation elongation factor
      0.006   13.5   0.1      0.012   12.5   0.0    1.3  1  TIGR00991 3a0901s02IAP34: GTP-binding protein


Domain annotation for each model (and alignments):
>> TIGR03598  GTPase_YsxC: ribosome biogenesis GTP-binding protein YsxC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  192.1   0.0   5.6e-60   1.5e-57      14     185 ..       2     172 ..       1     173 [. 0.96

  Alignments for each domain:
  == domain 1    score: 192.1 bits;  conditional E-value: 5.6e-60
   TIGR03598  14 pedklpeiafaGrSNvGKSsliNaLtn.rkklartSktPGrTqlinffevneelrlvDlPGYGyakvskeekekwqklieeYLekrenLkgvvllvDirhelkelDlellellkeakipvlvvltKaDklkkselkkalkkvkkelkkeeekvevllfSslkkegieelkael 185
                 p+ ++pe+ +aGrSNvGKSs++NaLt+ rkklar+SktPGrT+l+n+f++ + +++ DlPGYG+akvs+++ ++w+k i++YL +re+L+  v+lvD++ + ++lD +ll++l++++ip +vv+tK+D+l+ksel+++l +++++l  +++  + + fSs+++eg+++l++ l
  MMETSP1137-20121227|4299_1   2 PKFRVPEVTIAGRSNVGKSSALNALTGrRKKLARVSKTPGRTRLVNLFKLGNVCTITDLPGYGFAKVSEDMMDDWRKWITRYLLNREQLRLAVVLVDSQLDAQALDAQLLDFLQDKDIPAVVVATKVDRLNKSELDRNLLRLREKLGLSDD--QPIPFSSKTGEGVKQLWQYL 172
                 78899*********************72589********************************************************************************************************************9955..79***************987 PP

>> TIGR03594  GTPase_EngA: ribosome-associated GTPase EngA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.2   0.1   1.1e-18   3.1e-16     178     344 ..       9     174 ..       5     178 .] 0.46

  Alignments for each domain:
  == domain 1    score: 57.2 bits;  conditional E-value: 1.1e-18
   TIGR03594 178 iaiiGrpNvGKStLvNallgeervi..vsdiaGtTrDsidievevkgkkylliDTAGirrkkkveekveklsvlrtlkai..eradvvllvlDategiseqDlkiaglileegkalvivvNKwDlvkdekeleelkkeleeklkflkfapivfiSAltgkgveklleaike 344
                 ++i Gr NvGKS+ +Nal+g+++ +  vs+++G Tr    +++   g+  +++D  G    k  e+ ++      t   +  e+  ++++++D++ + +  D++++++++++  + v+v  K+D + +++el++   +l+ekl   +  pi f S +tg+gv++l++ ++e
  MMETSP1137-20121227|4299_1   9 VTIAGRSNVGKSSALNALTGRRKKLarVSKTPGRTRL---VNLFKLGNVCTITDLPGYGFAKVSEDMMDDWRKWITRYLLnrEQLRLAVVLVDSQLDAQALDAQLLDFLQDKDIPAVVVATKVDRL-NKSELDRNLLRLREKLGLSDDQPIPF-SSKTGEGVKQLWQYLQE 174
                 4555555555555555555555443334555555552...23333344555555555555544455555444333333330033334455555555555555555555555555555555555555.45555555555555555555555433.44555555555554443 PP

>> TIGR03918  GTP_HydF: [FeFe] hydrogenase H-cluster maturation GTPase HydF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.4   0.0   8.9e-19   2.4e-16       8     167 ..       7     176 ..       1     178 [] 0.82

  Alignments for each domain:
  == domain 1    score: 57.4 bits;  conditional E-value: 8.9e-19
   TIGR03918   8 lhialfGrrNaGKSsliNaltg..qdvaivsdvpGtTtDpvekamEllplGpv.vliDTaGld..D..egeLGelRvektrevlektd..lallvvdaeaeleeleeelleelkekkipvivvlnkidlkeeeke......keklekkkeeevvlvsakekegieelkealiell 167
                  ++++ Gr N+GKSs +Naltg  +++a vs++pG T     + + l +lG v +++D +G       e  + + R   tr  l++    la+++vd++ + ++l+ +ll+ l++k+ip +vv++k+d  ++++        +++   ++++++  s+k++eg+++l + l+e++
  MMETSP1137-20121227|4299_1   7 PEVTIAGRSNVGKSSALNALTGrrKKLARVSKTPGRT-----RLVNLFKLGNVcTITDLPGYGfaKvsEDMMDDWRKWITRYLLNREQlrLAVVLVDSQLDAQALDAQLLDFLQDKDIPAVVVATKVDRLNKSELdrnllrLREKLGLSDDQPIPFSSKTGEGVKQLWQYLQEHA 176
                 5799*****************83357899******98.....8999*****863689*9986522333778999*********9987622688899********************************9998876444433344445567899**************99999876 PP

>> TIGR00437  feoB: ferrous iron transport protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.8   0.0   2.3e-14   6.2e-12       1     151 [.      13     173 ..      13     178 .] 0.75

  Alignments for each domain:
  == domain 1    score: 42.8 bits;  conditional E-value: 2.3e-14
   TIGR00437   1 GnpNvGKstlfnaLtgsn...qkvgNwpGvTVekkegklelkgedieivDlPGiYsLttvs...ldE..k.vardyllnekadLvvnvvdasnleRnLyltlQ....llelgiplilalNlvdeAekkgirideekLeerLGv...pvvplsatkgrgieelkkaid 151
                 G  NvGKs+ +naLtg +   ++v+  pG T  +  ++l   g+  +i+DlPG Y + +vs   +d+  k ++r  l  e+  L v  vd++ l+ + +l +Q    l++ +ip++++  +vd  +k  +  +  +L e+LG+   + +p s++ g+g+++l + ++
  MMETSP1137-20121227|4299_1  13 GRSNVGKSSALNALTGRRkklARVSKTPGRT--R-LVNLFKLGNVCTITDLPG-YGFAKVSedmMDDwrKwITRYLLNREQLRLAVVLVDSQ-LDAQ-ALDAQlldfLQDKDIPAVVVATKVDRLNKSELDRNLLRLREKLGLsddQPIPFSSKTGEGVKQLWQYLQ 173
                 889*************882224688889988..3.4444447899********.9******6653332241555555568899999999864.4433.34444001145679******************************9444479***********9988776 PP

>> TIGR03596  GTPase_YlqF: ribosome biogenesis GTP-binding protein YlqF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.7   0.0   7.5e-11     2e-08     120     180 ..       8      70 ..       3      74 .. 0.88
   2 !    7.4   0.0     0.002      0.54      24     102 ..      92     176 ..      81     178 .] 0.80

  Alignments for each domain:
  == domain 1    score: 31.7 bits;  conditional E-value: 7.5e-11
   TIGR03596 120 ralvvGiPNvGKStliNrlak..kkvakvgnkpgvTksqqwiklskeleLlDtPGilwpkled 180
                 ++ + G  NvGKS+ +N l++  kk a+v ++pg T+  + +kl++  +++D PG  + k+++
  MMETSP1137-20121227|4299_1   8 EVTIAGRSNVGKSSALNALTGrrKKLARVSKTPGRTRLVNLFKLGNVCTITDLPGYGFAKVSE 70 
                 5789999************97335789****************************88888766 PP

  == domain 2    score: 7.4 bits;  conditional E-value: 0.002
   TIGR03596  24 vvievlDARiplssknpeleelvknk..prlivlnkaDladpektkkwlkyfe....ekgkkalavnakkkkkvkkilkaikkll 102
                 + + ++D+ +   + + +l +++++k  p ++v +k D  ++++ ++ l  ++     ++ + + +++k++++vk++ + +++ +
  MMETSP1137-20121227|4299_1  92 LAVVLVDSQLDAQALDAQLLDFLQDKdiPAVVVATKVDRLNKSELDRNLLRLReklgLSDDQPIPFSSKTGEGVKQLWQYLQEHA 176
                 667889999999999999999999885578********999998876554444111156789*****************999876 PP

>> TIGR00436  era: GTP-binding protein Era
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.3   0.0     3e-12   8.1e-10       3     162 ..       9     175 ..       7     178 .] 0.75

  Alignments for each domain:
  == domain 1    score: 36.3 bits;  conditional E-value: 3e-12
   TIGR00436   3 vailGrpnvGKSTLlNkllgqkisi..vSpkaqTTrnrisgiltegasqiifiDtPGlhek..khklnellvkeirkal...sevdlilfvvdsdeknke.dellleklqklkapvvlalnkldnkekdkllelidkeasllefk..eiveisalkgenveelkaiveak 162
                 v+i Gr+nvGKS  lN l+g    +  vS+ +   r r++  +  g +  +  D PG        ++ +   k i++ l   +++ l + +vds+   +  d  ll+ lq+ ++p v++  k+d+ +k +l +++ +++ +l     + +++s ++ge v++l + ++++
  MMETSP1137-20121227|4299_1   9 VTIAGRSNVGKSSALNALTGRRKKLarVSKTPG--RTRLVNLFKLG-NVCTITDLPGYGFAkvSEDMMDDWRKWITRYLlnrEQLRLAVVLVDSQLDAQAlDAQLLDFLQDKDIPAVVVATKVDRLNKSELDRNLLRLREKLGLSddQPIPFSSKTGEGVKQLWQYLQEH 175
                 89*****************98766611555555..55555555444.4566689998665511455566667888877734356889999****9888888***********************98887776666666665555445899**********9998887765 PP

>> TIGR00157  TIGR00157: ribosome small subunit-dependent GTPase A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   0.0   5.7e-07   0.00016     126     183 ..      10      63 ..       2      81 .. 0.84
   2 !   14.7   0.0   1.3e-05    0.0036      37     125 ..      85     177 ..      67     178 .] 0.85

  Alignments for each domain:
  == domain 1    score: 19.2 bits;  conditional E-value: 5.7e-07
   TIGR00157 126 vfaGqSGVGKSSLiNlldpevkqkvkevseklklGkhTTtsvelfhl.qgGliiDtPGf 183
                  +aG+S VGKSS +N+l+++ k+  + vs++ ++    T+ v+lf+l +  +i D PG 
  MMETSP1137-20121227|4299_1  10 TIAGRSNVGKSSALNALTGRRKKLAR-VSKTPGR----TRLVNLFKLgNVCTITDLPGY 63 
                 579***************99887666.8887655....999******99999*****96 PP

  == domain 2    score: 14.7 bits;  conditional E-value: 1.3e-05
   TIGR00157  37 aNvdqivlvsslvePelslalldrlLvva.eakniepiivlnkkdlleeedaekeqleelknlgY...kvllvsvkneegleelkeklkkris 125
                  N +q+ l   lv+ +l+ + ld  L+ + + k+i  ++v +k+d l++ + +++ l   ++lg    +++  s+k+ eg+++l + l+++ s
  MMETSP1137-20121227|4299_1  85 LNREQLRLAVVLVDSQLDAQALDAQLLDFlQDKDIPAVVVATKVDRLNKSELDRNLLRLREKLGLsddQPIPFSSKTGEGVKQLWQYLQEHAS 177
                 57888888888999********97777542889********************88887777787544489******************98765 PP

>> TIGR03597  GTPase_YqeH: ribosome biogenesis GTPase YqeH
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.7   0.0   1.9e-08   5.2e-06     157     226 ..       8      74 ..       3      90 .. 0.84
   2 !   10.0   0.0   0.00027     0.075      67     153 ..      92     176 ..      70     178 .] 0.78

  Alignments for each domain:
  == domain 1    score: 23.7 bits;  conditional E-value: 1.9e-08
   TIGR03597 157 dvyvvGvtNVGKSsliNkllklnkgkkkvittSkfpgTTldlieipldkesvllDtpGiineeqianlls 226
                 +v + G +NVGKSs +N+l    k   k+  +Sk pg T  ++  +l +  ++ D pG+  ++   ++++
  MMETSP1137-20121227|4299_1   8 EVTIAGRSNVGKSSALNALTGRRK---KLARVSKTPGRTRLVNLFKLGNVCTITDLPGYGFAKVSEDMMD 74 
                 57899**************95555...5566***************************987766666555 PP

  == domain 2    score: 10.0 bits;  conditional E-value: 0.00027
   TIGR03597  67 lvvavvD.ifdlegslikelkrfvkenkv..llvvNKidllpksvklekikewlkkeakeeglkpvdillvsakkkkglkellelikkar 153
                 l v +vD  +d + +l  +l +f++++++  ++v+ K+d l+k    +++ ++l +  ++ gl++ + +  s+k+++g+k+l +++++++
  MMETSP1137-20121227|4299_1  92 LAVVLVDsQLDAQ-ALDAQLLDFLQDKDIpaVVVATKVDRLNK----SELDRNLLRLREKLGLSDDQPIPFSSKTGEGVKQLWQYLQEHA 176
                 4455555345655.7888899999888764388999**98876....5788888999999*************************99865 PP

>> TIGR00231  small_GTP: small GTP-binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.0   0.0   1.8e-11     5e-09       5     162 ..       8     172 ..       5     174 .. 0.84

  Alignments for each domain:
  == domain 1    score: 34.0 bits;  conditional E-value: 1.8e-11
   TIGR00231   5 kivivGhvdvGKstLlnsllknkisiteskp.gvtrdyvteqieedGktykvnllDTaG......qedfdairrlyvreverslevvdivilvldveeglekqtkeiiheakkkgvpiilvvnKiDlkd..dlktkvkslfaklnaep..iielsaetgknidklfklv 162
                  ++i G+++vGKs+ ln l+++   + ++++ + +r+   ++++  +     ++ D++G       ed   ++r  +++     e + +++ ++d +   ++ + ++ + ++ k++p ++v++K+D  +  +l+    +l++kl+  +   i+ s +tg+++ +l +++
  MMETSP1137-20121227|4299_1   8 EVTIAGRSNVGKSSALNALTGRR-KKLARVSkTPGRTRLVNLFKLGN---VCTITDLPGygfakvSEDMMDDWRKWITRYLLNREQLRLAVVLVDSQLDAQALDAQLLDFLQDKDIPAVVVATKVDRLNksELDRNLLRLREKLGLSDdqPIPFSSKTGEGVKQLWQYL 172
                 799****************9987.33333332556666666699999...67*********99988888889999999999999999999999999988889999*******9*************9888899999999999987665558999999999999988876 PP

>> TIGR00450  mnmE_trmE_thdF: tRNA modification GTPase TrmE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.3   0.8   1.5e-09     4e-07     212     338 ..       9     140 ..       5     177 .. 0.76

  Alignments for each domain:
  == domain 1    score: 27.3 bits;  conditional E-value: 1.5e-09
   TIGR00450 212 laivGktNvGKSSLlNallkkdr..aiVsdikGttRDvvEedleleGilvkllDtAGi...ReaadkvE..klGiekslkaikeadlvlyvlDaskpltkdd.eliitlkkkkkdlllvlNKiDLaeleilksel 338
                 ++i+G+ NvGKSS lNal  + +  a Vs+ +G tR v  + ++l G +  + D  G    + ++d ++  +  i + l   ++  l + ++D + + +  d +l+++l+ k+ + ++v  K D  ++++l ++l
  MMETSP1137-20121227|4299_1   9 VTIAGRSNVGKSSALNALTGRRKklARVSKTPGRTRLV--NLFKL-GNVCTITDLPGYgfaKVSEDMMDdwRKWITRYLLNREQLRLAVVLVDSQLDAQALDaQLLDFLQDKDIPAVVVATKVDRLNKSELDRNL 140
                 89****************866552377*********65..56776.888888887764222445667764577899999999999********997776544499*****************9988666666544 PP

>> TIGR03156  GTP_HflX: GTP-binding protein HflX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.4   0.0   1.9e-08   5.2e-06     188     350 ..       5     175 ..       2     176 .. 0.75

  Alignments for each domain:
  == domain 1    score: 23.4 bits;  conditional E-value: 1.9e-08
   TIGR03156 188 evptvalvGYTNaGKstllnaltkaevlaedklFATLdpttrrlklpeeee.vlltDTVGF.irkLPheLveaFkaTLee..vaeadlllhvvDasdeeaeeqieaveevLeelgaeeipvllvlNkidkleeeeleeleekk........eeavlvsAkkgegleeLleaieea 350
                 +vp+v++ G  N GKs+ lnalt+ +   +  +  T    tr ++l + ++ +++tD  G+   k+ +++++ ++  +     ++ +l l vv + ++  ++ +   +++L+ l+ ++ip ++v  k+d+l+++el+++  +         ++ +  s+k+geg+++L + ++e+
  MMETSP1137-20121227|4299_1   5 RVPEVTIAGRSNVGKSSALNALTGRRKKLAR-VSKT-PGRTRLVNLFKLGNvCTITDLPGYgFAKVSEDMMDDWRKWITRylLNREQLRLAVVLVDSQLDAQAL--DAQLLDFLQDKDIPAVVVATKVDRLNKSELDRNLLRLreklglsdDQPIPFSSKTGEGVKQLWQYLQEH 175
                 699********************98655443.3333.457888888776651689**98876689**********86655215677777888765544444433..3689**********************88877765544223455556699*************9999875 PP

>> TIGR02729  Obg_CgtA: Obg family GTPase CgtA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.5   0.0   9.6e-09   2.6e-06     158     327 ..       7     175 ..       4     177 .. 0.86

  Alignments for each domain:
  == domain 1    score: 24.5 bits;  conditional E-value: 9.6e-09
   TIGR02729 158 advglvGlpnaGkStllsavsaakpkiadYpFtTlvPnLGvveveeeksfvlaDiPgliegasegagLGleFLkHiertrvllhlidlseedekdpvedleviekeLkkyseeLaekpelvvlnkidlleeeeleellkelkeel...ekkvlaisaltkegleellkkllel 327
                  +v + G +n+GkS+ l+a++  + k+a    t    +L  +  +  + +++ D+Pg    a+    +  ++ k i+r  +    + l+     d   d++++ ++L  + ++ ++ p +vv++k+d l+++el++ l +l+e+l   +++ + +s+ t+eg+++l + l e+
  MMETSP1137-20121227|4299_1   7 PEVTIAGRSNVGKSSALNALTGRRKKLARVSKTPGRTRLVNLF-KLGNVCTITDLPGY-GFAKVSEDMMDDWRKWITRYLLNREQLRLAVV-LVDSQLDAQALDAQLLDFLQD-KDIPAVVVATKVDRLNKSELDRNLLRLREKLglsDDQPIPFSSKTGEGVKQLWQYLQEH 175
                 5899**************************9999888885443.33479********7.56778889999999999998777777777776.457788999999999999875.7889**************************999889999*************9988775 PP

>> TIGR01393  lepA: GTP-binding protein LepA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0   2.2e-06   0.00061      97     174 ..      93     171 ..      80     177 .. 0.81

  Alignments for each domain:
  == domain 1    score: 16.1 bits;  conditional E-value: 2.2e-06
   TIGR01393  97 alllvdaaqGveaqtlanvylal..ekdleiiPvinkid.lPsadvervkkeieeviGldaeeailvsaktGigieellea 174
                 a++lvd+   ++aq+l    l +  +kd+  + v  k+d l +++ +r   +++e +Gl+ ++ i  s+ktG+g+++l + 
  MMETSP1137-20121227|4299_1  93 AVVLVDSQ--LDAQALDAQLLDFlqDKDIPAVVVATKVDrLNKSELDRNLLRLREKLGLSDDQPIPFSSKTGEGVKQLWQY 171
                 66777764..5666665555444127788889999***988899********************************99765 PP

>> TIGR00475  selB: selenocysteine-specific translation elongation factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0   2.4e-06   0.00065      81     163 ..      97     174 ..      78     177 .. 0.81

  Alignments for each domain:
  == domain 1    score: 16.3 bits;  conditional E-value: 2.4e-06
   TIGR00475  81 vdadeGvkaqtkEHLavlkllgikelivvltKaDrvdeeevkevEeelkeileeeeflknakivkvsAktGqGieeLkkelkn 163
                 vd++   +a     L  l+  +i+  +vv tK+Dr ++    e +++l +++e+ +   + + +  s ktG+G+++L ++l++
  MMETSP1137-20121227|4299_1  97 VDSQLDAQALDAQLLDFLQDKDIP-AVVVATKVDRLNKS---ELDRNLLRLREKLGLS-DDQPIPFSSKTGEGVKQLWQYLQE 174
                 444444444445567888999999.8999*********9...7889999999999999.99999*************999975 PP

>> TIGR00991  3a0901s02IAP34: GTP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.5   0.0   4.5e-05     0.012      41     135 ..       9     108 ..       5     134 .. 0.72

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 4.5e-05
   TIGR00991  41 ilvmgkggvgksstvnsiigervaavsafqseglrpvlvsrtragftlniidtpglieggyindqavn...iikrflldkt...idvllyvdrldayrvdd 135
                 + + g+  vgkss++n++ g r    +       r  lv   + g    i d pg       +d+  +    i r+ll++    + v+l   +lda  +d 
  MMETSP1137-20121227|4299_1   9 VTIAGRSNVGKSSALNALTGRRKKL-ARVSKTPGRTRLVNLFKLGNVCTITDLPGYGFAKVSEDMMDDwrkWITRYLLNREqlrLAVVLVDSQLDAQALDA 108
                 56789***************87644.3444445589999****************8666555555433222688999987422256666666777766553 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (178 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       179  (0.0436373); expected 82.0 (0.02)
Passed bias filter:                      164  (0.0399805); expected 82.0 (0.02)
Passed Vit filter:                        35  (0.00853242); expected 4.1 (0.001)
Passed Fwd filter:                        15  (0.00365675); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.35u 0.24s 00:00:00.59 Elapsed: 00:00:00.60
# Mc/sec: 391.57
//
Query:       MMETSP1137-20121227|4300_1  [L=110]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (110 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        82  (0.0199902); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.15s 00:00:00.29 Elapsed: 00:00:00.32
# Mc/sec: 453.71
//
Query:       MMETSP1137-20121227|4301_1  [L=282]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (282 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        36  (0.00877621); expected 82.0 (0.02)
Passed bias filter:                       27  (0.00658216); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.13s 00:00:00.33 Elapsed: 00:00:00.46
# Mc/sec: 809.15
//
Query:       MMETSP1137-20121227|4302_1  [L=487]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.8e-12   43.5   0.0      8e-12   42.4   0.0    1.4  1  TIGR00653 GlnA: glutamine synthetase, type I
      1e-09   35.2   0.0    3.6e-09   33.5   0.0    1.9  1  TIGR03105 gln_synth_III: glutamine synthetase, type III


Domain annotation for each model (and alignments):
>> TIGR00653  GlnA: glutamine synthetase, type I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.4   0.0   3.9e-15     8e-12     122     280 ..     231     380 ..     212     390 .. 0.81

  Alignments for each domain:
  == domain 1    score: 42.4 bits;  conditional E-value: 3.9e-15
   TIGR00653 122 yfGpEaEFflfdkvefkeasnssflevdseegewnreveegnkgykikkkggYfdvepvDkakdirrelvlaleelglevevsHHEvataqaEidikfdklvkaaDeivlyKyvvknvakkhGktatFmpKplfgdngsGmHvhlslwk.dgenlfagee 280
                 ++G E+EFfl+ k  fk++   +            r+v + +     + ++ Y+++     a  + +e+ ++  ++g+ +++ H Eva+ q E +  f  ++ + De +++   +  +a+kh ++     Kp+ g ngsG H ++sl   +g nlf+g++
  MMETSP1137-20121227|4302_1 231 NIGLEQEFFLIPKSAFKKRPDLQLAG---------RTVMGCDAPRGQELCDHYMSPLN-AAALRCMKEMQHECFKMGIPLKTRHREVAPNQYECAPFFGLATAQIDENLVVMELMEEIADKHNLVCLLAEKPFKGINGSGKHNNFSLGTeSGLNLFNGPQ 380
                 68899999999999998663333222.........22333333333445566766544.456778899999****************************************************************************8769*******98 PP

>> TIGR03105  gln_synth_III: glutamine synthetase, type III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.5   0.0   1.7e-12   3.6e-09     115     254 ..     230     380 ..     209     487 .] 0.80

  Alignments for each domain:
  == domain 1    score: 33.5 bits;  conditional E-value: 1.7e-12
   TIGR03105 115 lktGveceffllrree.....d....gklsvaDkaDklakpcYDqralmr..rydvleeisealnelGwdlYqiDheDanGqfelnfeyaDalttaDrvaffkylvkeiaeeegllatfmPkPfadrtGnGlhlhlslldedgknlfadda 254
                  ++G+e effl+ +++     d    g++++  +a + ++ c  + +  +      ++e+ +   ++G+ l +   e a  q+e    +  a    D   ++  l++eia+++ l++ +  kPf+   G+G h ++sl  e g nlf+ ++
  MMETSP1137-20121227|4302_1 230 PNIGLEQEFFLIPKSAfkkrpDlqlaGRTVMGCDAPRGQELCDHYMSPLNaaALRCMKEMQHECFKMGIPLKTRHREVAPNQYECAPFFGLATAQIDENLVVMELMEEIADKHNLVCLLAEKPFKGINGSGKHNNFSLGTESGLNLFNGPQ 380
                 5677777777776553211112222244444444455555565554433311456788999999999999999999***********************************************************************9874 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (487 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        84  (0.0204778); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.37u 0.14s 00:00:00.51 Elapsed: 00:00:00.41
# Mc/sec: 1567.77
//
Query:       MMETSP1137-20121227|4303_1  [L=326]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00042   16.4   0.0     0.0013   14.8   0.0    1.6  1  TIGR04075 bacter_Pnkp: polynucleotide kinase-phosphatase
  ------ inclusion threshold ------
      0.019   12.2   0.0      0.032   11.4   0.0    1.4  1  TIGR04123 P_estr_lig_assc: metallophosphoesterase, DNA ligase-associated


Domain annotation for each model (and alignments):
>> TIGR04075  bacter_Pnkp: polynucleotide kinase-phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   6.3e-07    0.0013     179     271 ..      65     144 ..      51     159 .. 0.75

  Alignments for each domain:
  == domain 1    score: 14.8 bits;  conditional E-value: 6.3e-07
   TIGR04075 179 kGPfdiiGdvhGCldeleelleklGyeveeeeegkavevthpegrkavflGdlvdrGpdspdvlrlvmsmvka..gaalcvpGnheekllrklrG 271
                 + P  i Gd+hG +++l el++  G                pe    +f+Gd+vdrG +s++++ l   + +    +   ++Gnhe++ + ++ G
  MMETSP1137-20121227|4303_1  65 SSPVTICGDIHGQFHDLLELFRTGGE-C-------------PE-TSYIFMGDFVDRGYNSVETMTLLLLLKARypHRITLLRGNHESRQITQVYG 144
                 56888999999999998888776553.2.............22.2469**************99988766543214556689***9987766655 PP

>> TIGR04123  P_estr_lig_assc: metallophosphoesterase, DNA ligase-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   1.6e-05     0.032      61     113 ..      89     138 ..      50     157 .. 0.79

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 1.6e-05
   TIGR04123  61 eelqpeelivlGDlfhdreaaerlelealaelrelaaglevvlveGNHDrake 113
                  e+  ++ i++GD+++  +++   e+ +l  l +     +++l +GNH+  ++
  MMETSP1137-20121227|4303_1  89 GECPETSYIFMGDFVDRGYNSV--ETMTLLLLLKARYPHRITLLRGNHES-RQ 138
                 556667889********99999..4445555555558899********94.33 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (326 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        90  (0.0219405); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.29u 0.16s 00:00:00.44 Elapsed: 00:00:00.43
# Mc/sec: 1000.66
//
Query:       MMETSP1137-20121227|4304_1  [L=481]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00076   16.2   0.2     0.0016   15.1   0.1    1.5  1  TIGR00873 gnd: 6-phosphogluconate dehydrogenase (decarboxylating)


Domain annotation for each model (and alignments):
>> TIGR00873  gnd: 6-phosphogluconate dehydrogenase (decarboxylating)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.1   3.9e-07    0.0016      50     103 ..     174     227 ..     161     268 .. 0.84

  Alignments for each domain:
  == domain 1    score: 15.1 bits;  conditional E-value: 3.9e-07
   TIGR00873  50 gaesieefvkslekPrkilllvkaGaavdavieellpllekgdiiidGGnslyk 103
                  a++++ f + l+kP k +l +  Ga v + i+ ++++l k d +i GG   y+
  MMETSP1137-20121227|4304_1 174 VAKELAAFASVLDKPTKPVLAILGGAKVSDKIQLIKNMLSKVDRMIIGGGMAYT 227
                 578999*************************************77777666664 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (481 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       131  (0.0319356); expected 82.0 (0.02)
Passed bias filter:                      104  (0.0253535); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.18s 00:00:00.54 Elapsed: 00:00:00.56
# Mc/sec: 1133.69
//
Query:       MMETSP1137-20121227|4305_1  [L=229]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (229 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        88  (0.0214529); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.16s 00:00:00.37 Elapsed: 00:00:00.31
# Mc/sec: 975.02
//
Query:       MMETSP1137-20121227|4306_1  [L=744]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.7e-11   39.6   0.9    6.7e-11   39.6   0.6    1.6  2  TIGR00881 2A0104: phosphoglycerate transporter family protein
    4.5e-06   23.7   7.1    4.5e-06   23.7   4.9    2.5  2  TIGR00893 2A0114: D-galactonate transporter
  ------ inclusion threshold ------
      0.011   12.1   7.4     0.0041   13.5   2.6    1.9  3  TIGR00894 2A0114euk: Na(+)-dependent inorganic phosphate cotransporter


Domain annotation for each model (and alignments):
>> TIGR00881  2A0104: phosphoglycerate transporter family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.6   0.6   4.9e-14   6.7e-11       9     216 ..     108     317 ..     100     360 .. 0.85
   2 ?   -4.1   0.1      0.96   1.3e+03      48      73 ..     389     416 ..     382     424 .. 0.72

  Alignments for each domain:
  == domain 1    score: 39.6 bits;  conditional E-value: 4.9e-14
   TIGR00881   9 lvRknfalalpelqeeiglsktdlGlllsafsiaYgiskfvvgvvsDrvsarvflaigLilvaivnlflgfssslwvliallalnGlfqglgwppcgrlltkwfsrserGtvvaiwnishnvggallpp..lvllaialllswhvvfivpgiiaiivslilllllrdspqsvglpkleelrneekeedkekkeeeltkkeillqyvlknk 216
                 + R++++ + p+l++e +ls + l  ++     a++++kf+   +    s+r++l+   + +++++ f  +     v    +a+  +f +++ +++   + +wf+r+ +G+++a+ n++  vg  ++     +ll  +  l+w+v ++  ++ ++++ +++ ++l++ p  v+ p   +  ++e ++++  +  e + + i ++ +l++ 
  MMETSP1137-20121227|4306_1 108 VARRSLSSSGPSLVAEGVLSVERLEEIFKVGFNAFALGKFLAVPLMFVGSKRAMLLQIFMISGACTAFCIAPREPLVQSGCWAVLRVFSAMALSTALPFVGNWFPRKWYGRIWALVNSGFQVGYLVASYgfQALLFSKRGLHWRVPMLSCAVGGLVLFVMCTVFLQPAPPMVKKPLSAPVVEKERDRAQTDEISEPQSRPIRARLLLRKM 317
                 78*****************************************************************999999999999*******************************************9766552112345556677899999999999999999999***********9999999999988888888888888888777777654 PP

  == domain 2    score: -4.1 bits;  conditional E-value: 0.96
   TIGR00881  48 fvvgvvsDrvsa..rvflaigLilvaiv 73 
                 ++ +vv Dr+ +  +++l +gL++v ++
  MMETSP1137-20121227|4306_1 389 LLGSVVYDRATQldKALLVAGLFAVNVA 416
                 4567788888744489999999988764 PP

>> TIGR00893  2A0114: D-galactonate transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.7   4.9   3.3e-09   4.5e-06       3     248 ..     103     353 ..     101     467 .. 0.67
   2 ?    1.2   2.3     0.022        30     321     396 ..     499     574 ..     484     577 .. 0.78

  Alignments for each domain:
  == domain 1    score: 23.7 bits;  conditional E-value: 3.3e-09
   TIGR00893   3 tvinyldratlSiAavtlkedLglsaaqyglvfsafsigyvlfqlpggllldriGakktlavaivlWglftllqafatalvslivlRvllGlaEaplfPgiikivasWFPakeratavsifnsaqalgaiiggplvgwilvefs...WqlvFiieGvlaiilgvlilkvikdkpekakvlkeeeksivvggllaeqagkknseakkaqikelLkdrrviglalgqflvnil.....lyffltwfplylkqergl 248
                  v+n + r +lS+ +++l  +  ls + +  +f++ + +++l+++++  l+   + + +l  + ++ g  t++  ++ ++       ++l ++ a + ++    v +WFP+k ++++ ++ ns++++g ++++     +l + +   W++  + ++v +++l v+   +++ +p    + k+   + vv++ +   +  + se+++  i++ L  r+++  +++++++ ++     l+ ++t + +ylk+ + l
  MMETSP1137-20121227|4306_1 103 AVLNGVARRSLSSSGPSLVAEGVLSVERLEEIFKVGFNAFALGKFLAVPLMFVGSKRAMLLQIFMISGACTAFCIAPREPLVQSGCWAVLRVFSAMALSTALPFVGNWFPRKWYGRIWALVNSGFQVGYLVASYGFQALLFSKRglhWRVPMLSCAVGGLVLFVMCTVFLQPAPP---MVKKPLSAPVVEKERDRAQTDEISEPQSRPIRARLLLRKMWTRWVFWAMIIACaaytpLVEYGTHVTSYLKEMLAL 353
                 567778899999999999999999999999999999999999999998877766666666666666677777766666444444444555556677777777799***********************9998744333333333477******************9999998877...334444444444423333455667899999***************9999876622222566788888888876554 PP

  == domain 2    score: 1.2 bits;  conditional E-value: 0.022
   TIGR00893 321 laffgkgl.aailwavisdvlskeiagltgGlinllGnlagivgPivigaiaattGsfagallvvaalaligalsvl 396
                 +a+   +l  ++++a+ +  + ke a+l  ++++++G+++++++  ++  i+  +G + g+ + +a l  ++als+ 
  MMETSP1137-20121227|4306_1 499 VAGATIALpVSLPFAMFALDFGKEGAALLSSVLSAVGCASSLIFLRLFPEIVRKYG-WCGVHTSLASLGGVSALSMS 574
                 3333333447789999999999**************************99999999.88888888888777777765 PP

>> TIGR00894  2A0114euk: Na(+)-dependent inorganic phosphate cotransporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0      0.17   2.3e+02     134     209 ..      99     174 ..      94     178 .. 0.61
   2 ?   13.5   2.6     3e-06    0.0041     135     294 ..     190     353 ..     147     358 .. 0.70
   3 ?   -2.5   0.0      0.22     3e+02     171     218 ..     497     545 ..     491     548 .. 0.71

  Alignments for each domain:
  == domain 1    score: -2.1 bits;  conditional E-value: 0.17
   TIGR00894 134 vivlRvlqGlaeglvspaqhellakWiPPkER.srlvsavlsGaqlGtlivlpisGlicesdlgWpavfYifgivgt 209
                 +++  vl+G+a   +s++  +l+a  +   ER   +  + +  + lG ++++p++ +          +f i+g++++
  MMETSP1137-20121227|4306_1  99 LFLFAVLNGVARRSLSSSGPSLVAEGVLSVERlEEIFKVGFNAFALGKFLAVPLMFVGSKR-AMLLQIFMISGACTA 174
                 5666677777777777777777777777777733455666666777777777775333333.455667777776654 PP

  == domain 2    score: 13.5 bits;  conditional E-value: 3e-06
   TIGR00894 135 ivlRvlqGlaeglvspaqhellakWiPPkERsrlvsavlsGaqlGtlivlp.isGlicesd.lgWpavfYifgivgtvvlilwlvlv......yddPseHpkisesEkkyiekslveevss.srkslPiKailkSlpvwaivvasvghiwgleilltylPtfiksvlhl 294
                  vlRv+  +a +++      ++  W+P k  +r+ ++v sG+q+G l++      l+     l W +    +++ g v++++  v++        +P   p ++++     + ++ e +s   r  l ++ + +   +wa+++a+ +++ +l+   t++  ++k++l l
  MMETSP1137-20121227|4306_1 190 AVLRVFSAMALSTAL----PFVGNWFPRKWYGRIWALVNSGFQVGYLVASYgFQALLFSKRgLHWRVPMLSCAVGGLVLFVMCTVFLqpappmVKKPLSAPVVEKERDRAQTDEISEPQSRpIRARLLLRKMWTRWVFWAMIIACAAYT-PLVEYGTHVTSYLKEMLAL 353
                 456666555444444....46789**********************9976505555555447999988888888899999999999722111134555566665444444444444433334677777888889999999999998876.7888889999999999876 PP

  == domain 3    score: -2.5 bits;  conditional E-value: 0.22
   TIGR00894 171 avlsGaqlGtlivlpisGlicesd.lgWpavfYifgivgtvvlilwlvl 218
                 a+++Ga++   ++lp + +  +++  g   +  + ++vg++ ++++l l
  MMETSP1137-20121227|4306_1 497 ASVAGATIALPVSLPFAMFALDFGkEGAALLSSVLSAVGCASSLIFLRL 545
                 5566666666666666667777766677777889999999999999866 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (744 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       116  (0.0282789); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.53u 0.16s 00:00:00.69 Elapsed: 00:00:00.57
# Mc/sec: 1693.10
//
Query:       MMETSP1137-20121227|4307_1  [L=145]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (145 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        88  (0.0214529); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.16s 00:00:00.33 Elapsed: 00:00:00.32
# Mc/sec: 598.08
//
Query:       MMETSP1137-20121227|4308_1  [L=224]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (224 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        78  (0.0190151); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.17s 00:00:00.36 Elapsed: 00:00:00.33
# Mc/sec: 895.93
//
Query:       MMETSP1137-20121227|4309_1  [L=39]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (39 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       131  (0.0319356); expected 82.0 (0.02)
Passed bias filter:                      121  (0.0294978); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:00.25
# Mc/sec: 205.90
//
Query:       MMETSP1137-20121227|4310_1  [L=453]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (453 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       100  (0.0243784); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.16s 00:00:00.47 Elapsed: 00:00:00.31
# Mc/sec: 1928.74
//
Query:       MMETSP1137-20121227|4311_1  [L=105]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (105 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        31  (0.00755729); expected 82.0 (0.02)
Passed bias filter:                       29  (0.00706972); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.17s 00:00:00.32 Elapsed: 00:00:00.43
# Mc/sec: 322.30
//
Query:       MMETSP1137-20121227|4312_1  [L=269]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (269 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        72  (0.0175524); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.10s 00:00:00.32 Elapsed: 00:00:00.53
# Mc/sec: 669.91
//
Query:       MMETSP1137-20121227|4313_1  [L=548]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.013   12.5   0.0      0.021   11.7   0.0    1.3  1  TIGR02690 resist_ArsH: arsenical resistance protein ArsH


Domain annotation for each model (and alignments):
>> TIGR02690  resist_ArsH: arsenical resistance protein ArsH
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   5.2e-06     0.021      80     165 ..     379     461 ..     368     485 .. 0.84

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 5.2e-06
   TIGR02690  80 kvqelrelsqwseGqvwvsperhGaltgilksqidwiplalGsvrptqGktlavmqvsgGsqsfnavnqlrilGrwlrmltipnqs 165
                 + +el+el    +  +w   + hG+l  +lk+q d i   lG++r  q    a   v+gG+ s   v+         rm + pn+ 
  MMETSP1137-20121227|4313_1 379 ASTELEELDGDGQQSLWRVVDEHGKLLKMLKAQHDEI---LGCLRQIQTDGRASNAVTGGATSATDVQGTPSRNTTARMNAKPNDH 461
                 557899999999999********************98...7**********************99998877777777777777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (548 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       150  (0.0365675); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.15s 00:00:00.51 Elapsed: 00:00:00.54
# Mc/sec: 1339.44
//
Query:       MMETSP1137-20121227|4314_1  [L=219]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (219 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        50  (0.0121892); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.12s 00:00:00.32 Elapsed: 00:00:00.32
# Mc/sec: 903.30
//
Query:       MMETSP1137-20121227|4315_1  [L=926]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.3e-76  253.8  25.0    9.8e-55  183.6   2.8    3.4  3  TIGR00917 2A060601: Niemann-Pick C type protein family
    6.9e-38  127.8  27.6      1e-17   61.0   6.6    5.0  5  TIGR00918 2A060602: transmembrane receptor Patched
    1.9e-12   43.9  15.1    3.6e-12   43.0   2.4    3.5  3  TIGR00921 2A067: efflux transporter, putative, hydrophobe/amphiphile efflux-3 (HAE3) family
    1.4e-06   24.6   6.9    2.3e-06   23.9   4.8    1.2  1  TIGR00920 2A060605: 3-hydroxy-3-methylglutaryl-coenzyme A reductase
  ------ inclusion threshold ------
      0.024   10.3  13.6     0.0059   12.3   4.8    2.1  2  TIGR00915 2A0602: RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
      0.056   11.0   0.8        8.1    3.9   0.1    3.1  3  TIGR01477 RIFIN: variant surface antigen, rifin family


Domain annotation for each model (and alignments):
>> TIGR00917  2A060601: Niemann-Pick C type protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  183.6   2.8   1.4e-57   9.8e-55     299     909 ..       8     620 ..       5     645 .. 0.82
   2 !   40.3   2.6   2.6e-14   1.8e-11    1019    1135 ..     668     782 ..     630     806 .. 0.83
   3 !   40.5   1.6   2.2e-14   1.5e-11    1136    1202 ..     829     893 ..     817     895 .. 0.92

  Alignments for each domain:
  == domain 1    score: 183.6 bits;  conditional E-value: 1.4e-57
   TIGR00917 299 nekqsaavetilerfftkyGsfva.rkPglvlllsvvlvvllgvGliklevetdPvkLWvapdsraalekeyfDtkfgPfyrveqliikavqtsqdekfpevldrdllkklldlqkkikeleaeyegelvtlddicfaplkpyncliesvlklfqnsiskldeekeddgvlvdyleallesllspsClsafggPvdPavvLGGfednn.fseasalvvtflvnnfvnktdklekalaWekkfiefvkniakpnlsakisfsaersiedeLkresdaDvltilvsYlvmflYislsLGhvkrlkslfvdskvaLGlaGvlivlasvvisvGvfsaiglkatLiiveviPfLvLavgvdnifilvqtyerlerlrrevvkraeilltleqqlarvLakvgPsilLaslseslafllGalskmPavrafslyaalavliDfLLqitafvaLlvlDikraeekrlDilpcikgeksd...................................isaekssvqkkeglLtrffkevyaPlLlkkivkivvivifvglllagialatrvdiGLdqelalPqdsylqeyfkslaelle..vGppvyivlkgdydy....tdses.qnlvcagqgcn.kdsvvnrldnltyiakpassWlDDyld 909
                 +e+ + +  + le+ f  + + v+ r+P+l ++ s+++ ++ gvGl+ +  etd  kLW+   +ra ++ ey ++ fg        + +      d    +vl++++l++ + +++     ++e e++++   dic +  ++++c  ++ l+l+  +++ ld+   d  +l d  +     l +   +++f +  +Pa     +++n    +a+al   +lvn    ++d       +e  + + ++ +  +++  ++s+ +ers +deL+r  +aD    +++ +v+ +Y+sl+LG     ++ +v+s+v L  + ++ v + vv+  G+ s+++++    i+  +P +vL v vd i+i v + er              + +   +la+ +ak g +++++sl+ ++a ++G+ s++P v  f  y a   l  +L+ +t f   l lD +r   +rl  +pc   ++                                     ++ e+++     +   +++++ ya +Ll ++v ++v++if+gl  a+i +a++++ GLd +  lP+dsy++ + +    +++  +     iv ++d++     t+ ++  + + a ++    ds  n+  +++   ++ ss+lD +++
  MMETSP1137-20121227|4315_1   8 VEDAQDRLRSRLENCFECWATRVVlRRPLLLIFSSLIVCAAFGVGLVIIDSETDGLKLWAPQTARAYKDWEYIEDTFGET---PSSLFAYF----DRGGENVLTYEVLTQTMSMHTWT---TTECESDGLFWADICEKWANEGSCRTTNFLELWSYNQTILDQAAADGTILRDITS-----LGQ-AAIASFAA--QPA-----YDENGlLVKATALSFSYLVN---SDSD----GNNFEGSWNDGIETTVDASVV-QLSYFSERSFDDELERLVSADTTLFIIALIVITIYLSLTLG-----RRSLVESRVILAATAMINVGLGVVAGFGFASILNIQFNS-ISTLLPLIVLGVQVDDIIITVAAVERAGPGIGV------SEDARRARLAKGIAKSGAAVTISSLTTVIALAIGTSSNLPGVVMFCAYGAFCFLFAYLVLVTFFYGCLELDERRIAANRLSFFPCRTRKQTAstngtsnanstsktssaseaaasntdpnirhestvPTKEQHTRLGMFSRGLKLLQQQYAEMLLTPWVSAIVVLIFLGLTGASIGIANNISTGLDERDILPDDSYVLRALDVEDTYFRgrLIDMNMIVRNEDWNDpsvrTSVSDtLEAIAAKEYVAsIDSSWNEAYEASSYYNASSSYLDAHFS 620
                 56778888999******999865439***************************************************953...33333333....446679***********998754...44555789***********************************999988844333.....333.34566665..565.....665541679***********...4444....457899999999998888887.8****************************************.....5779*******************************9986.689*******************99988765444......45677889*****************************************************************************777666689**************************8887555444444444444444578899**************************************************99876655553112233455666676641111333331344555555431466666555555556677777777664 PP

  == domain 2    score: 40.3 bits;  conditional E-value: 2.6e-14
   TIGR00917 1019 aakvtrslklevfpYsvfYvffeqYLtiksdallnlgislgaifvvtlvllglnvlsavvvvisvgmivvnllgimalwnislnavsvvnlvmavgisvefcshiaaafatskkvsr 1135
                   ++ +    +e f +   Y+f e   +i++  l ++g +++aif ++l  +   v +av v +sv+m + +l+  m + n+  ++vs v l+ma g+++++ +hi +af ++ + +r
  MMETSP1137-20121227|4315_1  668 DSEAAVRGLVETFTFTQSYIFAEADDEIWNSILSSMGWAILAIFCIVL--VFASVPVAVWVTVSVAMGCADLFLWMVIGNVHADTVSYVCLLMALGLAIDYSVHIGHAFDQAGRSER 782 
                  444444556889999999*************************98855..5558999****************************************************99955554 PP

  == domain 3    score: 40.5 bits;  conditional E-value: 2.2e-14
   TIGR00917 1136 derakealaemGssvfsGitltklvGvvvLafskseifqvyYfrmYLalvllGalhGLvfLPvllsl 1202
                   era eal  mG+sv+ G t t ++G++v+af+ s  f   +f m  +  ++G lh Lv LPvll++
  MMETSP1137-20121227|4315_1  829 RERATEALLTMGASVIQGGT-TTFLGILVIAFASSAAFRTLFF-MLAGTCIFGVLHALVLLPVLLTY 893 
                  68****************98.6699**************9988.8889999*************998 PP

>> TIGR00918  2A060602: transmembrane receptor Patched
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.3   0.0     3e-05      0.02      61     139 ..      38     112 ..      14     121 .. 0.85
   2 !   61.0   6.6   1.5e-20     1e-17     374     591 ..     229     447 ..     218     483 .. 0.81
   3 !   24.3   0.0   1.8e-09   1.2e-06     641     767 ..     455     586 ..     431     622 .. 0.68
   4 !   14.5   2.5   1.6e-06    0.0011     929    1046 ..     660     777 ..     635     792 .. 0.81
   5 !   26.3   0.4   4.3e-10     3e-07    1051    1121 ..     829     898 ..     824     920 .. 0.80

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 3e-05
   TIGR00918  61 vlvvgllvfsafavGlraanletnveqlwvevGgrveqelkytkkkiGeeaaftsqlliqtakeeganvltpealkahl 139
                 +++ +l+v +af vGl     et+  +lw  + +r  ++ +y +++ Ge        l       g+nvlt e l++ +
  MMETSP1137-20121227|4315_1  38 LIFSSLIVCAAFGVGLVIIDSETDGLKLWAPQTARAYKDWEYIEDTFGETP----SSLFAYFDRGGENVLTYEVLTQTM 112
                 567789999***************************************964....456666778899999999998866 PP

  == domain 2    score: 61.0 bits;  conditional E-value: 1.5e-20
   TIGR00918 374 nssqkvlafssttlddilkkfsdvsvirvvsGyllmlayacltllrwdcaksqgsvGlaGvllvalsvaaGlGlcallGisfnaattqvlpflalGvGvddvfllahafsetgrniplee.....rtgeilkrtGasvvltsisnvtaffmaalipipalrafslqaavvvvsnlaavllvfpailsldlrrrearrldifccfvspcaarviqiepqayads 591
                  s  ++  fs  ++dd l+++  + +   ++ ++++ +y  ltl r   ++s+  +  + ++ v l v aG+G++++l i fn+ +  +lp++ lGv vdd+ +  +a   +g++i + e     r  + + + Ga+v ++s+++v a+ + +   +p + +f+   a    +++ + +  f   l ld rr  a+rl  f c +     +    +  + a+s
  MMETSP1137-20121227|4315_1 229 ASVVQLSYFSERSFDDELERLVSADTTLFIIALIVITIYLSLTLGRRSLVESRVILAATAMINVGLGVVAGFGFASILNIQFNSIS-TLLPLIVLGVQVDDIIITVAAVERAGPGIGVSEdarraRLAKGIAKSGAAVTISSLTTVIALAIGTSSNLPGVVMFCAYGAFCFLFAYLVLVTFFYGCLELDERRIAANRLSFFPCRTRK---QTASTNGTSNANS 447
                 45678889*************99999999999**********************999999*************************9.59**************************888662322245566789************************************999999999999********************998773...3333333322333 PP

  == domain 3    score: 24.3 bits;  conditional E-value: 1.8e-09
   TIGR00918 641 adsasstrdllsqfedskvaclesp..carftla.tfaekhyapfllkskakvvvillflallglslygttrvrdGldltdivprdtkeydflsaqlryfs..fyemyv.vtqknvdyakvqkllydlhqsfs 767
                 +++a+s  d     ++s+v  +e+      f+   ++ +++ya +ll +++ ++v+l+fl+l g s+  +  +  Gld  di+p d+     l+    yf   + +m + v +++ + ++v++ + d  +  +
  MMETSP1137-20121227|4315_1 455 SEAAASNTDPNI-RHESTVPTKEQHtrLGMFSRGlKLLQQQYAEMLLTPWVSAIVVLIFLGLTGASIGIANNISTGLDERDILPDDSYVLRALDVEDTYFRgrLIDMNMiVRNEDWNDPSVRTSVSDTLEAIA 586
                 222222222222.223333333322002223322245689***********************************************9999999999998434777764144555666677776666665555 PP

  == domain 4    score: 14.5 bits;  conditional E-value: 1.6e-06
   TIGR00918  929 aiekvraicakyeklGl.asypsGipflfweqylglrrslllsisvvlvctllvvallllnpwtaglivlvlalmtvelfGimgllGiklsavpvviliasvGigveftvhvalaflta 1046
                  ++++ +a+ +++   Gl +++     ++f e    + +s+l s+   +++ + +v ++  ++  a+ + +++a+  ++lf  m +  +   +v  v l++++G+++ ++vh+  af  a
  MMETSP1137-20121227|4315_1  660 MLKERKAMDSEAAVRGLvETFTFTQSYIFAEADDEIWNSILSSMGWAILAIFCIVLVF-ASVPVAVWVTVSVAMGCADLFLWMVIGNVHADTVSYVCLLMALGLAIDYSVHIGHAFDQA 777 
                  5555666666666666525677778889999999999999999999999988887555.67889999*****************999**************************999543 PP

  == domain 5    score: 26.3 bits;  conditional E-value: 4.3e-10
   TIGR00918 1051 nrravlalehslapvldGalstllgvlmlagsefdfivryffavlavltvlGvlnglvllpvllsllGpep 1121
                  + ra+ al  + a v++G  +t lg+l++a +      r +f +la   ++Gvl++lvllpvll++  p+ 
  MMETSP1137-20121227|4315_1  829 RERATEALLTMGASVIQGGTTTFLGILVIAFASS-AAFRTLFFMLAGTCIFGVLHALVLLPVLLTYATPKL 898 
                  57999***********************996543.345899999999*******************99864 PP

>> TIGR00921  2A067: efflux transporter, putative, hydrophobe/amphiphile efflux-3 (HAE3) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    2.5   0.0    0.0092       6.3       4      77 ..      33     111 ..      30     119 .. 0.80
   2 !   43.0   2.4   5.2e-15   3.6e-12     201     677 ..     258     796 ..     220     811 .. 0.69
   3 ?    0.2   3.5     0.045        31     669     731 ..     829     891 ..     826     893 .. 0.91

  Alignments for each domain:
  == domain 1    score: 2.5 bits;  conditional E-value: 0.0092
   TIGR00921   4 rtviivvvllllilsaygaqqlelesdte...kqlskdlelyksykllqkelGvstesllvlik..gdDvkdeevleal 77 
                 r  ++++++ l++  a+g+  + ++s+t+      ++   +yk+++ ++  +G    sl+   +  g+ v + evl   
  MMETSP1137-20121227|4315_1  33 RRPLLLIFSSLIVCAAFGVGLVIIDSETDglkLWAPQTARAYKDWEYIEDTFGETPSSLFAYFDrgGENVLTYEVLTQT 111
                 6668899999*******99988887766511146799****************99999998888778888888887655 PP

  == domain 2    score: 43.0 bits;  conditional E-value: 5.2e-15
   TIGR00921 201 sgilvvlvLllvfksvvrk......llpLvivl...fgVvvvlGlmglLGiPlsaatlaalplliGlgIdYgiqltn...RyeEErdkgkakeeA.vveavkrtgkAvliallttvlGFlalllsvlpmlkelgvllvlGlilaylltllvlpallklideirrkvmkkkk...............................................akdlereeiagekseiekalskvskltvrhpvvilvvali..ivglglYaaakiklevnlekfipqdlpslqalkeleslmggsgdevtilvkadDvrdpellreidelsreikakeelvyeassivdlvkekekliapekseelqaileeipeeeegeyisggdllhiiikvkvasvdleqseieelreki..lrdvqfadpppGvkvevt.GesvviaemvelvteglskmtvvgvllvlivllvvyRdivkavvpliailsvilwaigllglagipsslilaalvslilGlGvdysihlleRy....fEErkelspkeaiirale 677
                  ++l+v+ ++l     +r       +l  + ++   +gVv  +G+  +L i ++  +++   +++G+ +d  i +     R    ++   +   A + + ++++g Av i+ lttv+  +  + s lp +  +        + ayl  +++    l+l +        ++                                                +k+++  +    +  ++   ++ +++  +  v+++vv++    +g++   a++i++  +    +p d   l+al++    + g    ++++v+ +D  dp +   +      i ake  v +  s  +   e   ++    s  l a +++ +++ + ++ ++   +     +k +   l+  ++ +  +++   +++  +    G   + t  +s+++ae  + + +    +    ++l +  ++ v+ ++ +av   +++ ++     + + + ++    ++ +   + lGl +dys+h+ + +    + Er   s   +  +a +
  MMETSP1137-20121227|4315_1 258 IIALIVITIYLSLTLGRRSlvesrvILAATAMInvgLGVVAGFGFASILNIQFNSISTLLPLIVLGVQVDDIIITVAaveRAGPGIGVSEDARRArLAKGIAKSGAAVTISSLTTVIALAIGTSSNLPGVVMFCAYGAFCFLFAYLVLVTFFYGCLELDERRI--AANRLSffpcrtrkqtastngtsnanstsktssaseaaasntdpnirhestvpTKEQHTRLGMF-SRGLKLLQQQYAEMLLTPWVSAIVVLIFlgLTGASIGIANNISTGLDERDILPDDSYVLRALDVEDTYFRGRLIDMNMIVRNEDWNDPSVRTSVSDTLEAIAAKE-YVASIDSSWNEAYEASSYYNASSS-YLDAHFSAFVKSTRWQSEVACASSDC-EVIKASRYWLTYRDPTQGSQMLkeRKAMDSEAAVRGLVETFTfTQSYIFAEADDEIWNSILSSM-GWAILAIFCIVLVFASVPVAVWVTVSVAMGCADLFLWMVIGNVHADTVSYVCLLMALGLAIDYSVHIGHAFdqagRSERSVTSHPPSAAQAAS 796
                 233334444444444444422234444444333333689999*****************9999*******877665511144445555555555546789******************999999******************************999977544..2333334456677899****************99999999999888877766555554443332.2222222233333333333344444433125777888899*************************************************9999988776666665.567777777878888888888777.89999999888876544333321222.235666677777777654443310334444444445434444369*******999865543332.2345556666779*************999999999********************************99984333345555444444444444 PP

  == domain 3    score: 0.2 bits;  conditional E-value: 0.045
   TIGR00921 669 keaiiralertGkailvsalTtagGFlaLllsqlpiirnfGlvavvgvllsllvalvvfPall 731
                 +e  ++al + G +++ ++ Tt  G l + ++  ++ r + ++++   ++ +l alv +P ll
  MMETSP1137-20121227|4315_1 829 RERATEALLTMGASVIQGGTTTFLGILVIAFASSAAFRTLFFMLAGTCIFGVLHALVLLPVLL 891
                 5677889999*****************************999999999999999999999987 PP

>> TIGR00920  2A060605: 3-hydroxy-3-methylglutaryl-coenzyme A reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.9   4.8   3.3e-09   2.3e-06      55     218 ..     247     415 ..     235     438 .. 0.80

  Alignments for each domain:
  == domain 1    score: 23.9 bits;  conditional E-value: 3.3e-09
   TIGR00920  55 eevlssdvivltivrciavlyiyyqftklrklGskyilGiaGlftvfssfvfstavikflgkeltelkealffflllid.....lskasalakfalssnsqdevkdniarGlallGPtitldtvvevlvigvGtlsgvrrlevlccfavlsvlvnyvvfmtffPaclsl 218
                 e   s+d  ++ i   +  +y+ + + +   + s+ il  + +  v    v       +l+ +   +   l++++l +      ++ a++ + +     s d  +  +a+G+a  G ++t+ ++ +v+ +++Gt s +  + ++c ++ +  l  y+v++tff  cl l
  MMETSP1137-20121227|4315_1 247 ERLVSADTTLFIIALIVITIYLSLTLGRRSLVESRVILAATAMINVGLGVVAGFGFASILNIQFNSISTLLPLIVLGVQvddiiITVAAVERAGPGIGVSEDARRARLAKGIAKSGAAVTISSLTTVIALAIGTSSNLPGVVMFCAYGAFCFLFAYLVLVTFFYGCLEL 415
                 5667888888888888888888888888888899999998888887777776666667777777777777777777543112213444444444444567889999************************************************************986 PP

>> TIGR00915  2A0602: RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   4.8   8.6e-06    0.0059     343     450 ..     254     368 ..     229     408 .. 0.67
   2 ?    1.9   0.3     0.012       8.2     877     941 ..     704     767 ..     665     812 .. 0.67

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 8.6e-06
   TIGR00915 343 tlleaivLvflvmylfLqnfratli.......pt..lavPvvLlgtfavlaalgfsintLtlfalvLaiGllvddaivvvenvervmkeegldPkeatkksmgqiqgalvgialvls 450
                 t l  i L+++ +yl L   r +l+       +t  + v + ++++f++ ++l++  n++  +  ++++G+ vdd i+ v  ver     g+   e ++++      a  g a+ +s
  MMETSP1137-20121227|4315_1 254 TTLFIIALIVITIYLSLTLGRRSLVesrvilaATamINVGLGVVAGFGFASILNIQFNSISTLLPLIVLGVQVDDIIITVAAVERAGPGIGV--SEDARRARLAKGIAKSGAAVTIS 368
                 44556778888888877655555441111111552255667789***************988888889*****************7544443..33333333222223333333333 PP

  == domain 2    score: 1.9 bits;  conditional E-value: 0.012
   TIGR00915 877 alsllvvfLvLaalyeswsiPvsvllvvPlgilGallaaslrglsndvyfqvGlltviGLsakna 941
                 + ++l++f ++  ++ s  + v v ++v +g     l +++ ++++d    v ll+ +GL+   +
  MMETSP1137-20121227|4315_1 704 GWAILAIF-CIVLVFASVPVAVWVTVSVAMGCADLFLWMVIGNVHADTVSYVCLLMALGLAIDYS 767
                 44455554.44555555555555555566666666666667777788777788888887765544 PP

>> TIGR01477  RIFIN: variant surface antigen, rifin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.0     0.031        21     320     340 ..     254     274 ..     226     280 .. 0.85
   2 ?    0.7   0.0      0.11        74     179     299 ..     348     469 ..     321     511 .. 0.65
   3 ?    3.9   0.1     0.012       8.1     197     329 ..     581     717 ..     562     720 .. 0.50

  Alignments for each domain:
  == domain 1    score: 2.5 bits;  conditional E-value: 0.031
   TIGR01477 320 iailiIvlimvIIYLiLrYRR 340
                   + iI li++ IYL L   R
  MMETSP1137-20121227|4315_1 254 TTLFIIALIVITIYLSLTLGR 274
                 5789***********997655 PP

  == domain 2    score: 0.7 bits;  conditional E-value: 0.11
   TIGR01477 179 aaaaaaieagikaggikavieelkkklglsklkkkklkeiinasnyknasslveavkke.leelckveeskkk..ellcnaveksekavekkkvveeivaeaekaakaaakaaekketaeleka 299
                  a +a +++gi+++g +++i++l++++ l+  ++ +l  ++    y    +l++ +    +   c    +++   ++l+++  +++k++   +++ + +a++++++++a++aa +++  +++++
  MMETSP1137-20121227|4315_1 348 DARRARLAKGIAKSGAAVTISSLTTVIALAIGTSSNLPGVVMFCAYGAFCFLFAYLVLVtFFYGCLELDERRIaaNRLSFFPCRTRKQT--ASTNGTSNANSTSKTSSASEAAASNTDPNIRHE 469
                 45678889999999999999999999999999999999999999999988887765433033333322222111233333333333222..334444444444444444444444444444443 PP

  == domain 3    score: 3.9 bits;  conditional E-value: 0.012
   TIGR01477 197 vieelkkklglsklkkkklkeiinasnyknasslveavkkeleelckveeskkk....ellcnaveksekavekkkvveeivaeaekaakaaakaa.ekketaelekaet.aev.eatltayytaiiasiiailiIvlim 329
                 ++e++  k  ++   + +++e  +as+y nass +  +++++ +++k+++ +++    ++ c +++ s+   + ++ ++      e++a + ++a+    et ++++  + ae  + + +++ +++  +i+ai  Ivl+ 
  MMETSP1137-20121227|4315_1 581 TLEAIAAKEYVA-SIDSSWNEAYEASSYYNASSSY--LDAHFSAFVKSTRWQSEvacaSSDCEVIKASRYWLTYRDPTQGSQMLKERKAMDSEAAVrGLVETFTFTQSYIfAEAdDEIWNSILSSMGWAILAIFCIVLVF 717
                 455555443333.4467899999999999887533..3333333333333332201124445555555444333332222222222223222222202344444444443122203445666778888999999999985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (926 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       232  (0.0565578); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.99u 0.19s 00:00:01.18 Elapsed: 00:00:00.99
# Mc/sec: 1234.56
//
Query:       MMETSP1137-20121227|4316_1  [L=502]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.8e-05   20.8   0.7     0.0064   12.4   0.0    2.8  3  TIGR00870 trp: transient-receptor-potential calcium channel protein
  ------ inclusion threshold ------
      0.054   12.1   0.1      0.054   12.1   0.1    1.9  3  TIGR02530 flg_new: flagellar operon protein


Domain annotation for each model (and alignments):
>> TIGR00870  trp: transient-receptor-potential calcium channel protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.4   0.0   3.1e-06    0.0064       7     158 ..      72     219 ..      65     246 .. 0.80
   2 !    4.1   0.1     0.001       2.1      95     156 ..     298     362 ..     279     366 .. 0.64
   3 !    1.3   0.0    0.0072        15     255     282 ..     365     392 ..     363     409 .. 0.85

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 3.1e-06
   TIGR00870   7 veaeeielseeekaflkaiergdlalvkrkleeaklveklnincvdrlgrsallsaaieneneelt.eLllkke....egevGdalLhaiskelvdaveailllllkaarksltlselandestseftkgitalilAihkqnyeivklLlekgasve 158
                 ++ e+++ +++ + f+ka++ g l  v+  l+       ++i+  ++++++  l +a    +  ++ eLl          e+G + L+ + +   + + ++l++llk ++ +l +   ++ + +++ t+  t+l  A++ +  e v++Ll+ g+ v 
  MMETSP1137-20121227|4316_1  72 INGEQTNCKASTRGFIKAVKAGRLDEVQSLLDS-----GVDIE-HRSMWENTPLLVACHYAHSAVAlELLGRGAnasaVNELGCTPLLYACN---EHLAEVLEVLLKVDGLRLDPPAAQVYSRFTDQTASRTPLLAAAESNFHEGVNMLLAGGVLVD 219
                 566788899999999999999999999999998.....78899.778877765546666555555415554444777777899999988888...77888888889999888888899999********************************9998 PP

  == domain 2    score: 4.1 bits;  conditional E-value: 0.001
   TIGR00870  95 lvdaveailllllkaarksltls..elandestsef.tkgitalilAihkqnyeivklLlekgas 156
                 l+ ++e+ ++  ++a + ++ l     +   ++++    g t l+ A++k +  iv +Lle+ga+
  MMETSP1137-20121227|4316_1 298 LQAVCEMEIQTTKEAIQHQNHLVhsMCQRGIELDQAdEDGCTVLHRAAQKGSKRIVMVLLENGAD 362
                 44555555555444443333332113333334444314578***********************8 PP

  == domain 3    score: 1.3 bits;  conditional E-value: 0.0072
   TIGR00870 255 ilNhqgltplklaakegkkelfrlkLai 282
                 i N +g+tp++ aa  g  ++  ++L+ 
  MMETSP1137-20121227|4316_1 365 IRNVAGNTPHECAARGGHVDVHDHLLQA 392
                 99************************95 PP

>> TIGR02530  flg_new: flagellar operon protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.1   2.6e-05     0.054       9      61 ..     305     358 ..     297     372 .. 0.79
   2 ?   -3.3   0.0       1.7   3.4e+03      33      49 ..     400     416 ..     382     419 .. 0.63
   3 ?   -3.1   0.0       1.5     3e+03      86      96 .]     448     458 ..     443     458 .. 0.82

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 2.6e-05
   TIGR02530   9 elq..aeelklskhalerlrernisiskedikkleeaveeaekkGvkdslillnd 61 
                 e+q  +e ++  +h  + + +r+i++ + d +     +++a++kG+k ++++l +
  MMETSP1137-20121227|4316_1 305 EIQttKEAIQHQNHLVHSMCQRGIELDQADEDGC-TVLHRAAQKGSKRIVMVLLE 358
                 4444489999*****************9998876.5799********99866533 PP

  == domain 2    score: -3.3 bits;  conditional E-value: 1.7
   TIGR02530  33 skedikkleeaveeaek 49 
                   e+i+++++a e+a+k
  MMETSP1137-20121227|4316_1 400 RAEHIRHVNDATEMASK 416
                 45677888888888765 PP

  == domain 3    score: -3.1 bits;  conditional E-value: 1.5
   TIGR02530  86 vftnidgtvvl 96 
                  ft i gt+v+
  MMETSP1137-20121227|4316_1 448 PFTEISGTMVV 458
                 59*****9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (502 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       137  (0.0333983); expected 82.0 (0.02)
Passed bias filter:                      101  (0.0246221); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.15s 00:00:00.53 Elapsed: 00:00:00.48
# Mc/sec: 1380.39
//
Query:       MMETSP1137-20121227|4317_1  [L=175]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (175 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        96  (0.0234032); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.15s 00:00:00.34 Elapsed: 00:00:00.33
# Mc/sec: 699.94
//
Query:       MMETSP1137-20121227|4318_1  [L=376]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (376 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       135  (0.0329108); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.15s 00:00:00.43 Elapsed: 00:00:00.43
# Mc/sec: 1154.14
//
Query:       MMETSP1137-20121227|4319_1  [L=297]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (297 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       120  (0.029254); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.16s 00:00:00.38 Elapsed: 00:00:00.38
# Mc/sec: 1031.60
//
Query:       MMETSP1137-20121227|4320_1  [L=586]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.2e-25   87.6   0.0    2.2e-25   86.7   0.0    1.3  2  TIGR02956 TMAO_torS: TMAO reductase sytem sensor TorS
    4.7e-12   43.1   0.0    6.1e-12   42.7   0.0    1.1  1  TIGR02916 PEP_his_kin: putative PEP-CTERM system histidine kinase
    4.9e-11   40.0   0.0    1.4e-10   38.6   0.0    1.6  2  TIGR02966 phoR_proteo: phosphate regulon sensor kinase PhoR
    2.5e-08   30.7   0.1    3.6e-07   26.9   0.0    2.1  2  TIGR02938 nifL_nitrog: nitrogen fixation negative regulator NifL
    9.1e-08   29.3   0.0    1.4e-07   28.6   0.0    1.3  1  TIGR01386 cztS_silS_copS: heavy metal sensor kinase
    0.00017   17.8   0.0    0.00026   17.2   0.0    1.2  1  TIGR03785 marine_sort_HK: proteobacterial dedicated sortase system histidine kinase
  ------ inclusion threshold ------
      0.038   11.1   0.0      0.089    9.9   0.0    1.6  1  TIGR02154 PhoB: phosphate regulon transcriptional regulatory protein PhoB


Domain annotation for each model (and alignments):
>> TIGR02956  TMAO_torS: TMAO reductase sytem sensor TorS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.4   0.3       1.3   7.4e+02     448     499 ..       9      58 ..       6      69 .. 0.63
   2 !   86.7   0.0   3.8e-28   2.2e-25     520     693 ..     191     367 ..     176     372 .. 0.94

  Alignments for each domain:
  == domain 1    score: -4.4 bits;  conditional E-value: 1.3
   TIGR02956 448 lnHakAraeAeeAnrAKSaFLAtmSHEiRTPlnGvlGTleLLadtkLtseqq 499
                   Ha+ + eA    rA    L +  H+  TP+  +   l+ L+  +L ++ q
  MMETSP1137-20121227|4320_1   9 RMHAQSQ-EAAATQRAIQSXLXAXXHDFGTPMSVLQMLLSVLR-RRLRKNVQ 58 
                 5577664.56667888888899999999999975544444444.34555555 PP

  == domain 2    score: 86.7 bits;  conditional E-value: 3.8e-28
   TIGR02956 520 LDySkiEaG.hlsiserafdlskLledvlhlmesraqekgiqLsleidedlpevlqgDlsrirQvliNlvgNaiKFTdrGsvvlrvslndds.llfeVeDtGvGiaeeeqetlFkaftqaegrkk.sgGTGLGLAiskrlveamdgelsveSelgkGScFafelplergkkaeksat 693
                 + ySk+E G +l+   ++f++  L++ v  + +   +++ ++ ++ +   +p v++ D + +  vl+Nl +Na+K T+ Gsv+l vsl++   l +eV DtG G++     +lF++f+ a+g ++ +  TGLGL   +   +a  g+++ +S+  +GS F  e+p+  ++ +++s+ 
  MMETSP1137-20121227|4320_1 191 IAYSKLETGsELEPLIKKFNVADLVHMVASIARDTGKSNDVEVRYVVAPGTPLVMKSDGRWLFMVLVNLASNAMKHTSDGSVTLTVSLTPSGkLSMEVRDTGKGVPAWFAPSLFQPFSSANGANScVESTGLGLYXLEAAGDAAPGDIGYASNAPRGSVFFVEVPFVPAEDVDDSDG 367
                 56*******99******************************************************************************9888****************************66551789**************************************9999988765 PP

>> TIGR02916  PEP_his_kin: putative PEP-CTERM system histidine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.7   0.0     1e-14   6.1e-12     530     679 .]     195     355 ..     161     355 .. 0.79

  Alignments for each domain:
  == domain 1    score: 42.7 bits;  conditional E-value: 1e-14
   TIGR02916 530 qLrekgl.eeekkavdlvdllervieskraqkprievsv......dkdlevradrerlervlghLvqNAleATeeeGkVkirverek.eaavieieDsGqGmseeFirerLFkPFdttKka.....GmGiGvyesreyveelGGeieveStpgkGtiftlvlP 679
                 +L  + + e   k ++++dl++ v   +r +++  +v+v      ++ l ++ d   l  vl++L+ NA+  T+ +G+V++ v+ +  +++++e+ D+G+G++  F    LF+PF+++ +a       G+G+y  +    +  G+i  +S++ +G++f + +P
  MMETSP1137-20121227|4320_1 195 KLETGSElEPLIKKFNVADLVHMVASIARDTGKSNDVEVryvvapGTPLVMKSDGRWLFMVLVNLASNAMKHTS-DGSVTLTVSLTPsGKLSMEVRDTGKGVPAWF-APSLFQPFSSANGAnscveSTGLGLYXLEAAGDAAPGDIGYASNAPRGSVFFVEVP 355
                 5555555455567777778777776655555444444331111124559999999****************996.8********98879***************99.899*******99852333357******************************99887 PP

>> TIGR02966  phoR_proteo: phosphate regulon sensor kinase PhoR
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0      0.53   3.1e+02     122     144 ..      32      54 ..      21      63 .. 0.79
   2 !   38.6   0.0   2.3e-13   1.4e-10     173     331 ..     192     352 ..     180     354 .. 0.84

  Alignments for each domain:
  == domain 1    score: -2.1 bits;  conditional E-value: 0.53
   TIGR02966 122 sHELrtPLtvlkGyletleeepe 144
                  H+  tP++vl+  l +l+ + +
  MMETSP1137-20121227|4320_1  32 XHDFGTPMSVLQMLLSVLRRRLR 54 
                 69999*******99999987653 PP

  == domain 2    score: 38.6 bits;  conditional E-value: 2.3e-13
   TIGR02966 173 tLsrlEsaak.ekeeekvdvaelleelkkeaealseekehqielev..daavkvkgdeeeLrsalsNLveNAikytpeggeitvrweeeeeg.aelsvkDtGeGIaaehlprltERFYRvdksrsretgGtGLGLaIvkHvlerheaeLeieSelgkGstFsv 331
                 + s+lE+ ++ e   +k++va l++ +++ a+ + ++++++++  v   + + +k+d + L  +l NL +NA+k+t +g ++t++++ + +g   ++v+DtG+G++a   p l+  F   + ++s     tGLGL     +     +++  +S+  +Gs+F v
  MMETSP1137-20121227|4320_1 192 AYSKLETGSElEPLIKKFNVADLVHMVASIARDTGKSNDVEVRYVVapGTPLVMKSDGRWLFMVLVNLASNAMKHTSDG-SVTLTVSLTPSGkLSMEVRDTGKGVPAWFAPSLFQPFSSANGANSCV-ESTGLGLYXLEAAGDAAPGDIGYASNAPRGSVFFV 352
                 5689998755256679999****9999999999999999999988843566777889999****************876.57777776665559************************999998876.569****9999999999999999999999999866 PP

>> TIGR02938  nifL_nitrog: nitrogen fixation negative regulator NifL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.1     0.035        21     274     307 ..      22      55 ..       7      82 .. 0.80
   2 !   26.9   0.0   6.1e-10   3.6e-07     342     462 ..     205     324 ..     162     352 .. 0.79

  Alignments for each domain:
  == domain 1    score: 1.3 bits;  conditional E-value: 0.035
   TIGR02938 274 ealretlsaaihrlqgPlnlisaaisvlerrgdd 307
                  a++  l a  h +  P+ ++   +svl rr  +
  MMETSP1137-20121227|4320_1  22 RAIQSXLXAXXHDFGTPMSVLQMLLSVLRRRLRK 55 
                 589999*************************443 PP

  == domain 2    score: 26.9 bits;  conditional E-value: 6.1e-10
   TIGR02938 342 avvpvnlnqvlrdvitllterllaaGivvdwqPaavlPavlGsesrlrslfkalvdnaieamaqkqvkrrelsistaveddlirveiedsGPGiPadlrlkvfePffttkass..rkhvGmGl 462
                  ++  n+ ++++ v  ++ +   ++ + v ++ a+  P v+ s+   r lf  lv+ a +am++ +     l++s +     + +e+ d+G G+Pa +    f+Pf ++ +++   +  G+Gl
  MMETSP1137-20121227|4320_1 205 LIKKFNVADLVHMVASIARDTGKSNDVEVRYVVAPGTPLVMKSD--GRWLFMVLVNLASNAMKHTSDGSVTLTVSLTP-SGKLSMEVRDTGKGVPAWFAPSLFQPFSSANGANscVESTGLGL 324
                 4677899*********************************9765..6899**************97666667665544.55679*************************99883345566665 PP

>> TIGR01386  cztS_silS_copS: heavy metal sensor kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.6   0.0   2.5e-10   1.4e-07     348     456 ..     246     354 ..     208     355 .. 0.81

  Alignments for each domain:
  == domain 1    score: 28.6 bits;  conditional E-value: 2.5e-10
   TIGR01386 348 egdaqlfrRalsNLlsNAlrytpegstievrverradevevsventgkgipeeelsrlFdRFYRvdaarsnseegtGLGLaIvrsiveaHgGeveaes.adgktrfklkf 456
                 ++d   +  +l NL sNA+++t++gs +       +++++++v +tgkg+p+   + lF  F  ++ a s  e+ tGLGL    +   a  G++   s a +  +f +++
  MMETSP1137-20121227|4320_1 246 KSDGRWLFMVLVNLASNAMKHTSDGSVTLTVSLTPSGKLSMEVRDTGKGVPAWFAPSLFQPFSSANGANSCVES-TGLGLYXLEAAGDAAPGDIGYASnAPRGSVFFVEV 354
                 555555666899*************976544455568*******************************998777.*****999988888888888877777777777766 PP

>> TIGR03785  marine_sort_HK: proteobacterial dedicated sortase system histidine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.0   4.5e-07   0.00026     525     686 ..     175     339 ..     165     355 .. 0.74

  Alignments for each domain:
  == domain 1    score: 17.2 bits;  conditional E-value: 4.5e-07
   TIGR03785 525 RAqegverlsaiLnsmseAtRlEqalqsa.ekedfdlsevlselvqgYqqlyeeqrfele...ieeedlvlrgspellaQllDKlvdNaieFskedgl.IevslkekkkealltveNeGpplPedlkeklFdsmvSvRaqkaqeqpHLGlGLyIvrliadfHqgeik 686
                 RA+++ e l+   ++  + ++lE   + +  +++f+++ ++  + +  +++ +++++e+     + ++lv++  +  l  +l  l +Na+  + ++++ ++vsl+ +  +  ++v+  G+ +P+    +lF+++ S    ++  +   GlGLy   +  d   g+i 
  MMETSP1137-20121227|4320_1 175 RASAALELLEVTRQKAIAYSKLETGSELEpLIKKFNVADLVHMVASIARDTGKSNDVEVRyvvAPGTPLVMKSDGRWLFMVLVNLASNAMKHTSDGSVtLTVSLTPS-GKLSMEVRDTGKGVPAWFAPSLFQPFSSANGANSCVE-STGLGLYXLEAAGDAAPGDIG 339
                 555555555555555555566665544331357899999999999999999999888865112567889************************99887567777654.57889***********************996666555.89*****88777777777764 PP

>> TIGR02154  PhoB: phosphate regulon transcriptional regulatory protein PhoB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.0   0.00015     0.089       4     115 ..     462     572 ..     459     577 .. 0.84

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 0.00015
   TIGR02154   4 rilvvedeeairellaynlek.egyevveaedaeealalikeelPdlilldWmlpgtsGielarrlrkeeetreiPiimltargeeedrvrgletGaddyvvkPfspkellar 115
                  +lvv+  +  r+ l + l++ +g  + +a d++ea+ ++ ++  +    d  + + sG    +r+ ++e+ r +   +l+   + + + ++l++G dd +   f+  +l a 
  MMETSP1137-20121227|4320_1 462 PVLVVDKVAYTRDALIMRLRRlTGAVAFCAFDGREAVEMLXNADAKTAAADARVRQCSGAGRQQRVASSERLRIVG--LLSGTRDSRLHRACLDAGMDDVLLNSFTNAQLHAV 572
                 68999999999999999998725667789******************************99888888887777665..4566666667779**************99999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (586 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        84  (0.0204778); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.45u 0.20s 00:00:00.65 Elapsed: 00:00:00.48
# Mc/sec: 1611.37
//
Query:       MMETSP1137-20121227|4321_1  [L=135]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (135 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       105  (0.0255973); expected 82.0 (0.02)
Passed bias filter:                       97  (0.023647); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.16s 00:00:00.33 Elapsed: 00:00:00.28
# Mc/sec: 614.43
//
Query:       MMETSP1137-20121227|4322_1  [L=838]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (838 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        72  (0.0175524); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.52u 0.17s 00:00:00.69 Elapsed: 00:00:00.36
# Mc/sec: 3072.41
//
Query:       MMETSP1137-20121227|4323_1  [L=185]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.1e-40  134.6   3.8    1.1e-39  134.4   2.6    1.0  1  TIGR00836 amt: ammonium transporter
    2.3e-28   96.9   1.6    3.4e-28   96.4   1.1    1.2  1  TIGR03644 marine_trans_1: probable ammonium transporter, marine subtype


Domain annotation for each model (and alignments):
>> TIGR00836  amt: ammonium transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  134.4   2.6   5.2e-43   1.1e-39       1     138 [.      39     185 .]      39     185 .] 0.91

  Alignments for each domain:
  == domain 1    score: 134.4 bits;  conditional E-value: 5.2e-43
   TIGR00836   1 dtawllvaaalVflmqpGlalLeaGlvrsknvlnillknlldlavvillyvllGyslafg..eeaetvngfiGts..kfglkn..kvlk.....esskeelpelvfflfqlvFaaiaaaivsgavaeRikfsayllfsvllltlvyppv 138
                 dt+++++aa+lVf mq+G+alL aG+vr+knv ni+lk +ld++++ ++++l+Gy++a++  +++   n fiGt   ++ l++  +  +     e +  +  + v+++fq++Faa+aa+ivsgavaeR+++sayl++ + +++++yp+v
  MMETSP1137-20121227|4323_1  39 DTFYIFWAATLVFSMQMGFALLSAGAVRRKNVQNIMLKGVLDACLGAVIWYLWGYGVAYDaeRDQPDANPFIGTGctNYALAGhvT--HsncnsEGQGAYGYDWVSWFFQYAFAAAAATIVSGAVAERCNLSAYLIYTTGITGFIYPVV 185
                 89**********************************************************77566789******998889999542..3346455556677899******************************************986 PP

>> TIGR03644  marine_trans_1: probable ammonium transporter, marine subtype
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.4   1.1   1.7e-31   3.4e-28       3     144 ..      38     184 ..      36     185 .] 0.83

  Alignments for each domain:
  == domain 1    score: 96.4 bits;  conditional E-value: 1.7e-31
   TIGR03644   3 ldtflflvsgalvmwmaaGfamleaGlvrskntteiltknvalfaiaaimyllvgynlmypgdall..legil..eafllaalesvadleagseedaayss.asdfffqvvfvatamsivsGavaerlklwaflvfavvltaliyPv 144
                 +dtf+++ ++ lv+ m  Gfa+l aG vr kn+ +i+ k v   ++ a++++l gy ++y ++  +   + ++    +  a + +v++ + +se++ ay      +ffq  f+a+a++ivsGavaer  l a+l+++  +t++iyPv
  MMETSP1137-20121227|4323_1  38 VDTFYIFWAATLVFSMQMGFALLSAGAVRRKNVQNIMLKGVLDACLGAVIWYLWGYGVAYDAERDQpdANPFIgtGCTNYALAGHVTHSNCNSEGQGAYGYdWVSWFFQYAFAAAAATIVSGAVAERCNLSAYLIYTTGITGFIYPV 184
                 79**********************************************************765433114445543222223334445555666677777664678*****************************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (185 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       133  (0.0324232); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.19u 0.17s 00:00:00.36 Elapsed: 00:00:00.37
# Mc/sec: 659.95
//
Query:       MMETSP1137-20121227|4325_1  [L=362]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (362 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        87  (0.0212092); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.14s 00:00:00.40 Elapsed: 00:00:00.51
# Mc/sec: 936.86
//
Query:       MMETSP1137-20121227|4326_1  [L=286]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (286 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        75  (0.0182838); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.16s 00:00:00.42 Elapsed: 00:00:00.33
# Mc/sec: 1143.91
//
Query:       MMETSP1137-20121227|4327_1  [L=226]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.9e-07   26.9   0.0    1.3e-05   22.7   0.0    2.1  1  TIGR01262 maiA: maleylacetoacetate isomerase


Domain annotation for each model (and alignments):
>> TIGR01262  maiA: maleylacetoacetate isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.7   0.0   3.2e-09   1.3e-05      14     170 ..      25     171 ..      21     208 .. 0.81

  Alignments for each domain:
  == domain 1    score: 22.7 bits;  conditional E-value: 3.2e-09
   TIGR01262  14 vRiaLaLkgidyesvpvnLlkdGeqkkeefkalNPqelvPtLkidegevltqSlAiieyLeetypepaLlpkdpakrarvralalliacdihPlqNlrvlqlleeklgvdeeekkewlkhwiekGlaalEellk.ekagafcvGdevtladvcLvpqv 170
                 +R+aLaL g++y+   v++        +e k   P + +P+L+  +g+++ q+ Ai+ ++ ++   + L p+d    ar  ++  ++   +  l N      l +  ++++++ ++       k l+ l++ ++ + +  f+vGd++t+ad+++   +
  MMETSP1137-20121227|4327_1  25 IRLALALGGVSYTDXIVQFKD-----WPERKPSTPWGSMPVLTLSDGTSIAQARAIMRFVGKE---TGLYPTDSLLAARCDEVMDTLEDILTGLMNQGSG--LPQA-EKEAKRLEAIQSGTPFKILTKLDQYIAeHGSSGFAVGDSLTIADLMMLCSL 171
                 7**************999987.....68889999*************************9875...66***********999999988777777777533..3322.222333333333334455788889888666778***********9987665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (226 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        86  (0.0209654); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.25u 0.16s 00:00:00.41 Elapsed: 00:00:00.32
# Mc/sec: 932.17
//
Query:       MMETSP1137-20121227|4328_1  [L=220]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00089   16.5   0.0     0.0027   14.9   0.0    1.6  2  TIGR01762 chlorin-enz: chlorinating enzymes


Domain annotation for each model (and alignments):
>> TIGR01762  chlorin-enz: chlorinating enzymes
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0       0.1   4.2e+02     134     156 ..      47      69 ..      38      76 .. 0.78
   2 !   14.9   0.0   6.5e-07    0.0027     209     243 ..      98     132 ..      83     139 .. 0.83

  Alignments for each domain:
  == domain 1    score: -2.1 bits;  conditional E-value: 0.1
   TIGR01762 134 itvwtaftdatrenGclkvipGt 156
                 ++ w  + d    nG l ++p +
  MMETSP1137-20121227|4328_1  47 VSFWCPLDDIDSTNGALVLLPRS 69 
                 67799999999999999999876 PP

  == domain 2    score: 14.9 bits;  conditional E-value: 6.5e-07
   TIGR01762 209 vplemkaGqfiiftsrlmhaslpnsseskirlGya 243
                     ++aG+ +if srl h+s+pn+s  + r+ y+
  MMETSP1137-20121227|4328_1  98 HAALVHAGDAVIFSSRLWHCSEPNTSAADRRVFYC 132
                 455678********************999998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (220 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        44  (0.0107265); expected 82.0 (0.02)
Passed bias filter:                       41  (0.00999512); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.20u 0.12s 00:00:00.32 Elapsed: 00:00:00.33
# Mc/sec: 879.93
//
Query:       MMETSP1137-20121227|4329_1  [L=504]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (504 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        83  (0.020234); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.17s 00:00:00.53 Elapsed: 00:00:00.51
# Mc/sec: 1304.36
//
Query:       MMETSP1137-20121227|4331_1  [L=287]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.3e-50  169.6   0.0    2.7e-50  169.4   0.0    1.0  1  TIGR00685 T6PP: trehalose-phosphatase
    1.2e-20   72.4   0.0    1.9e-20   71.7   0.0    1.3  1  TIGR01484 HAD-SF-IIB: HAD hydrolase, family IIB
    3.3e-05   21.9   0.0    0.00018   19.4   0.0    2.0  2  TIGR01662 HAD-SF-IIIA: HAD hydrolase, family IIIA
  ------ inclusion threshold ------
      0.024   11.8   0.0      0.057   10.5   0.0    1.5  2  TIGR01486 HAD-SF-IIB-MPGP: mannosyl-3-phosphoglycerate phosphatase family
      0.032   11.6   0.0      0.076   10.4   0.0    1.6  2  TIGR00099 Cof-subfamily: Cof-like hydrolase


Domain annotation for each model (and alignments):
>> TIGR00685  T6PP: trehalose-phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  169.4   0.0   3.3e-53   2.7e-50       2     249 ..      43     285 ..      42     286 .. 0.91

  Alignments for each domain:
  == domain 1    score: 169.4 bits;  conditional E-value: 3.3e-53
   TIGR00685   2 rkravlfDlDGTlseivkdPdaavvsdellevLqkLaarsdvalaliSGRklleklllvklpglvlageHGlelkadgktqdvseleek.ipvlkkaavelreelaeypgvvlErKkvalalHYRqadpelarkrvkellekilsakddfdlkvqdGkavvElkPr.dvnKGeivkklleeadvsgisakdvvvyLGDDlTDedaFrvvrkleselGfksVki.....dsaekktaAkfalagvaeVleflellv 249
                 +  a++ D+DGTls+iv +P++av+ +e +e+L++L  ++ v  +++SGR+   + +  +  ++ +ag+HGle++  g  q v+ + e+    lk+a  +l  +l++ pg + E+  ++l+ HYR ++pe  +++v+e+++++ls++    l+ + Gk+v El+P+ d++KG++v++ll+e    +     +++y+GDD+ DedaF  v    ++ G  ++k+           t+A ++l+ +a+V+ fl+  v
  MMETSP1137-20121227|4331_1  43 KTLAFFLDYDGTLSPIVMNPEEAVITEECREILRQLNFQYAV--SIVSGRSCEKLRNFIG-FEMDFAGSHGLEIRSPGGRQMVHPVGETvQHALKSAREDLDSKLSHLPGYLTEDNSFCLSAHYR-CVPEEHHEQVAETVKDVLSKQ--SLLRHKPGKMVHELRPDvDWDKGKAVEWLLDERIKDA-GGDVFPIYIGDDVADEDAFTFV----ARVGGLGIKVfnpavC-DPTSTTATYRLDHPAQVATFLRSFV 285
                 66799***********************************99..69****9866666665.689************************97889999999*************************9.66****************995..789****************************988775.5569******************....9999999999766533.345799***************9876 PP

>> TIGR01484  HAD-SF-IIB: HAD hydrolase, family IIB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.7   0.0   2.4e-23   1.9e-20       2     215 ..      47     244 ..      46     249 .. 0.87

  Alignments for each domain:
  == domain 1    score: 71.7 bits;  conditional E-value: 2.4e-23
   TIGR01484   2 lffDlDgTLldpk.....lelseelieaLerlrealgvkvvivTGRslaeikellkqlnlelpliaengalieaqgeklyaealpedvaevllseekelkeieailkslseryvgtfvedkalevaihysgqkeleqeldskllerlekigir.kdleleailsrsnalqkegetllevlp.agvdKgkalqalleeln...lkkeeilafGDsgNDeemleva 215
                 +f+D+DgTL +       + ++ee +e L +l  +  ++v+iv+GRs +++++++    +e   + ++g +i+++g+ + ++     v+e++ +   +lk+++++l+s  ++++g+++ed+++ +++hy+  +      + ++   +e+ + + +++ l ++        k g+++ e++p  ++dKgka+++ll+e     +   + +++GD+  De+++ ++
  MMETSP1137-20121227|4331_1  47 FFLDYDGTLSPIVmnpeeAVITEECREILRQLNFQ--YAVSIVSGRSCEKLRNFIG---FEMDFAGSHGLEIRSPGGRQMVH----PVGETVQH---ALKSAREDLDSKLSHLPGYLTEDNSFCLSAHYRCVP------EEHHEQVAETVKDVlSKQSL-LR-------HKPGKMVHELRPdVDWDKGKAVEWLLDERIkdaGGDVFPIYIGDDVADEDAFTFV 244
                 89*********999999999***************..*******************...9*********************5....89999999...9999*****************************743......33444444444421111222.22.......345***************************9999999**************9876 PP

>> TIGR01662  HAD-SF-IIIA: HAD hydrolase, family IIIA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.0   2.2e-07   0.00018       3      66 ..      47     101 ..      45     146 .. 0.81
   2 ?    0.0   0.0      0.22   1.8e+02     115     128 ..     229     241 ..     168     256 .. 0.72

  Alignments for each domain:
  == domain 1    score: 19.4 bits;  conditional E-value: 2.2e-07
   TIGR01662   3 vvlDlDgtLiddvdyvteedeaelypevidalaelkkeGykvvivtNqsgigrgkesveevsek 66 
                 ++lD DgtL    ++v +++ea +++e +++l++l+ + y v iv+++s      e+++++++ 
  MMETSP1137-20121227|4331_1  47 FFLDYDGTLS---PIVMNPEEAVITEECREILRQLNFQ-YAVSIVSGRS-----CEKLRNFIGF 101
                 79********...9************************.*********9.....3344555544 PP

  == domain 2    score: 0.0 bits;  conditional E-value: 0.22
   TIGR01662 115 vvvGDavltDleaa 128
                 +++GD + +D +a+
  MMETSP1137-20121227|4331_1 229 IYIGD-DVADEDAF 241
                 79999.55554443 PP

>> TIGR01486  HAD-SF-IIB-MPGP: mannosyl-3-phosphoglycerate phosphatase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0      0.71   5.8e+02       4      12 ..      49      57 ..      47     104 .. 0.55
   2 ?   10.5   0.0     7e-05     0.057     145     207 ..     172     237 ..     161     245 .. 0.83

  Alignments for each domain:
  == domain 1    score: -2.6 bits;  conditional E-value: 0.71
   TIGR01486  4 tDlDgtLld 12
                 D DgtL +
  MMETSP1137-20121227|4331_1 49 LDYDGTLSP 57
                566666543 PP

  == domain 2    score: 10.5 bits;  conditional E-value: 7e-05
   TIGR01486 145 eekeerleealaelglevvkgarfyhvl..gaesdKGkAvnalkqlykek.ekaikvvglGDspnD 207
                 e+  e ++ +l+++ l   k ++++h l  + + dKGkAv++l+++  +  +++++ + +GD   D
  MMETSP1137-20121227|4331_1 172 EQVAETVKDVLSKQSLLRHKPGKMVHELrpDVDWDKGKAVEWLLDERIKDaGGDVFPIYIGDDVAD 237
                 5567889999999999999*******993345678********99877766999999999997766 PP

>> TIGR00099  Cof-subfamily: Cof-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   9.2e-05     0.076       2      49 ..      47      98 ..      46     104 .. 0.92
   2 ?   -2.6   0.0      0.86   7.1e+02     186     198 ..     204     216 ..     153     238 .. 0.69

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 9.2e-05
   TIGR00099  2 ifiDlDGTLls.....kdkeispetkealaklrekGikvvlaTGRsykevkei 49
                +f+D DGTL       ++  i++e +e+l++l  + + v +++GRs ++++++
  MMETSP1137-20121227|4331_1 47 FFLDYDGTLSPivmnpEEAVITEECREILRQLNFQ-YAVSIVSGRSCEKLRNF 98
                79*******99999999999************888.**********9999887 PP

  == domain 2    score: -2.6 bits;  conditional E-value: 0.86
   TIGR00099 186 gvsKgsalqslae 198
                 + +Kg+a++ l++
  MMETSP1137-20121227|4331_1 204 DWDKGKAVEWLLD 216
                 5567777776665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (287 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       111  (0.02706); expected 82.0 (0.02)
Passed bias filter:                      111  (0.02706); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.27u 0.19s 00:00:00.46 Elapsed: 00:00:00.56
# Mc/sec: 664.58
//
Query:       MMETSP1137-20121227|4332_1  [L=114]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (114 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        70  (0.0170648); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.16s 00:00:00.32 Elapsed: 00:00:00.44
# Mc/sec: 341.97
//
Query:       MMETSP1137-20121227|4334_1  [L=132]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (132 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        89  (0.0216967); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.15s 00:00:00.30 Elapsed: 00:00:00.33
# Mc/sec: 527.96
//
Query:       MMETSP1137-20121227|4335_1  [L=106]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (106 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        26  (0.00633837); expected 82.0 (0.02)
Passed bias filter:                       26  (0.00633837); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.16s 00:00:00.32 Elapsed: 00:00:00.37
# Mc/sec: 378.13
//
Query:       MMETSP1137-20121227|4336_1  [L=336]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.3e-05   20.1   0.1    0.00086   16.2   0.0    2.0  2  TIGR02037 degP_htrA_DO: peptidase Do
    6.1e-05   20.2   6.1    9.5e-05   19.6   4.2    1.2  1  TIGR00599 rad18: DNA repair protein rad18
     0.0025   14.5   0.0      0.096    9.3   0.0    2.0  2  TIGR00054 TIGR00054: RIP metalloprotease RseP
      0.003   14.5   0.0     0.0053   13.7   0.0    1.4  1  TIGR00225 prc: C-terminal processing peptidase
  ------ inclusion threshold ------
      0.017   12.1   0.0      0.028   11.4   0.0    1.2  1  TIGR02038 protease_degS: periplasmic serine peptidase DegS


Domain annotation for each model (and alignments):
>> TIGR02037  degP_htrA_DO: peptidase Do
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0     1e-06   0.00086     259     298 ..      79     118 ..      74     136 .. 0.89
   2 ?    1.9   0.0     0.023        19     253     290 ..     173     209 ..     161     243 .. 0.76

  Alignments for each domain:
  == domain 1    score: 16.2 bits;  conditional E-value: 1e-06
   TIGR02037 259 kGalvaevlkgspAekaGlkaGDvilkvngkkiksaadlr 298
                 + a+v +v ++ pA++aG+++ D+il vn+ ++ + ++  
  MMETSP1137-20121227|4336_1  79 EQAYVHSVNQNTPAARAGVESLDLILTVNDVRVVNREHXD 118
                 5699***************************998877655 PP

  == domain 2    score: 1.9 bits;  conditional E-value: 0.023
   TIGR02037 253 lglekakGalvaevlkgspAekaGlkaGDvilkvngkk 290
                 ++ + +++a+v++v  g p+   Gl+aG+ +l vng  
  MMETSP1137-20121227|4336_1 173 FNENVTNAAVVSHVPAGEPSY-TGLRAGQALLFVNGAM 209
                 566667888899888888865.6899999999999865 PP

>> TIGR00599  rad18: DNA repair protein rad18
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   4.2   1.2e-07   9.5e-05      29      71 ..     272     316 ..     264     326 .. 0.91

  Alignments for each domain:
  == domain 1    score: 19.6 bits;  conditional E-value: 1.2e-07
   TIGR00599  29 ChvCkdffkaPvl..tsCsHtFCslCiRrcLseepkCPlCraedq 71 
                 C +C + +++P l    C+H FC  C  rc  +   CPlCr + +
  MMETSP1137-20121227|4336_1 272 CAICLQQLQSPRLwqAGCGHQFCKRCTERCRDTSDACPLCRKTAK 316
                 ***********985568************************8865 PP

>> TIGR00054  TIGR00054: RIP metalloprotease RseP
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.3   0.0   0.00012     0.096     200     246 ..      77     123 ..      39     130 .. 0.73
   2 ?    2.9   0.0      0.01       8.3     202     260 ..     179     236 ..     157     251 .. 0.81

  Alignments for each domain:
  == domain 1    score: 9.3 bits;  conditional E-value: 0.00012
   TIGR00054 200 pkielvlsdvvdnspaekaGlkeGDkilkidgeklkswrdlvklvke 246
                 +  ++ ++ v +n pa++aG++  D il ++++ + +++  +++ ++
  MMETSP1137-20121227|4336_1  77 DGEQAYVHSVNQNTPAARAGVESLDLILTVNDVRVVNREHXDQAARK 123
                 445678899************************99999888777665 PP

  == domain 2    score: 2.9 bits;  conditional E-value: 0.01
   TIGR00054 202 ielvlsdvvdnspaekaGlkeGDkilkidgeklkswrdlvklvkenpeksleikveRng 260
                 + +v+s+v + ++ +  Gl++G  +l ++g +  + +   +l++e +++++ i  +  g
  MMETSP1137-20121227|4336_1 179 NAAVVSHV-PAGEPSYTGLRAGQALLFVNGAMCFNPVHAHQLLREASGEVVVILQKSAG 236
                 45666776.66666779****************************99999988766666 PP

>> TIGR00225  prc: C-terminal processing peptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   0.0   6.5e-06    0.0053      63      98 ..      80     115 ..      54     128 .. 0.78

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 6.5e-06
   TIGR00225  63 eivivsplegsPAekagikpgDkIikvdgksvagme 98 
                 +  + s+ +++PA++ag+++ D I+ v++  v+  e
  MMETSP1137-20121227|4336_1  80 QAYVHSVNQNTPAARAGVESLDLILTVNDVRVVNRE 115
                 78899999********************99876654 PP

>> TIGR02038  protease_degS: periplasmic serine peptidase DegS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   3.4e-05     0.028     282     315 ..      83     116 ..      74     125 .. 0.86

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 3.4e-05
   TIGR02038 282 vtevdPngPaaragllvrdvilkldnkevisaee 315
                 v  v+ n+Paarag+   d+il +++  v+ +e+
  MMETSP1137-20121227|4336_1  83 VHSVNQNTPAARAGVESLDLILTVNDVRVVNREH 116
                 7899*********************998887665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (336 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       120  (0.029254); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.30u 0.18s 00:00:00.48 Elapsed: 00:00:00.56
# Mc/sec: 791.93
//
Query:       MMETSP1137-20121227|4337_1  [L=261]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (261 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       145  (0.0353486); expected 82.0 (0.02)
Passed bias filter:                      137  (0.0333983); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.17s 00:00:00.44 Elapsed: 00:00:00.47
# Mc/sec: 732.96
//
Query:       MMETSP1137-20121227|4338_1  [L=277]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (277 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        50  (0.0121892); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.16s 00:00:00.39 Elapsed: 00:00:00.34
# Mc/sec: 1075.32
//
Query:       MMETSP1137-20121227|4339_1  [L=230]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.057   10.3   7.1      0.099    9.5   4.9    1.4  1  TIGR00896 CynX: cyanate transporter


Domain annotation for each model (and alignments):
>> TIGR00896  CynX: cyanate transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   4.9   2.4e-05     0.099      27     143 ..      22     141 ..      13     150 .. 0.73

  Alignments for each domain:
  == domain 1    score: 9.5 bits;  conditional E-value: 2.4e-05
   TIGR00896  27 rsalglsasaaglLtalPvlalavlallapklarrlgeersvlagllliaaGiliRsaggtalllagtalag.vgiaiinv..llPslikrkfpe.rvglltglyslalalgaalaaavtv 143
                 r+++ ls +  ++ t lP+++   la l ++l++rl++ ++ ++  l+ ++   ++ a++ + + a+t +++  g+a + +  ll + +k   ++   + l++ y +a+    a aa+++v
  MMETSP1137-20121227|4339_1  22 RNEYALSCAGFAFFTVLPLVSAFPLATLPSILGKRLSRAAAAWTF-LASVVSFTLKDAAQRGRIHASTFVTLrKGLAAASAahLLLVALKLCGADgGFSGLIAFYPAAMSRRKAAAASLVV 141
                 899**********************************99888765.566678899999999999999988752455544431144444444433313455777777788777776666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (230 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        63  (0.0153584); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.19u 0.15s 00:00:00.34 Elapsed: 00:00:00.40
# Mc/sec: 758.94
//
Query:       MMETSP1137-20121227|4340_1  [L=412]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (412 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        96  (0.0234032); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.18s 00:00:00.48 Elapsed: 00:00:00.34
# Mc/sec: 1599.40
//
Query:       MMETSP1137-20121227|4341_1  [L=380]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      0.007   14.3   0.1      0.017   13.0   0.0    1.6  1  TIGR01484 HAD-SF-IIB: HAD hydrolase, family IIB


Domain annotation for each model (and alignments):
>> TIGR01484  HAD-SF-IIB: HAD hydrolase, family IIB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   0.0   4.1e-06     0.017      39      93 ..     320     377 ..     319     380 .] 0.86

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 4.1e-06
   TIGR01484  39 vTGRslaeikellkqlnl......elpliaengalieaqgeklyaealpedvaevllseek 93 
                 vT R+++ ++++  ++ +      e+ + ++ng+++++++++++++   +dv++  ++++k
  MMETSP1137-20121227|4341_1 320 VTAREQQDMMWQSGSVXVwdleqiEEQAREQNGYAVWEPEGQELIQ---KDVEQRMKGLNK 377
                 89************9999999999999******************7...666665555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (380 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       176  (0.0429059); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.29u 0.16s 00:00:00.44 Elapsed: 00:00:00.42
# Mc/sec: 1194.19
//
Query:       MMETSP1137-20121227|4342_1  [L=125]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.1e-58  193.6   0.1    8.9e-58  193.5   0.0    1.0  1  TIGR01235 pyruv_carbox: pyruvate carboxylase
    2.2e-35  120.0   0.0    2.4e-35  119.9   0.0    1.0  1  TIGR01108 oadA: oxaloacetate decarboxylase alpha subunit
    3.7e-06   24.2   0.0    4.9e-06   23.8   0.0    1.1  1  TIGR02146 LysS_fung_arch: homocitrate synthase
    6.9e-06   23.4   0.0    4.3e-05   20.8   0.0    1.8  2  TIGR02660 nifV_homocitr: homocitrate synthase
      7e-05   19.9   0.0    0.00011   19.3   0.0    1.2  1  TIGR02090 LEU1_arch: isopropylmalate/citramalate/homocitrate synthases
  ------ inclusion threshold ------
       0.01   12.8   0.0      0.016   12.2   0.0    1.3  1  TIGR03217 4OH_2_O_val_ald: 4-hydroxy-2-oxovalerate aldolase


Domain annotation for each model (and alignments):
>> TIGR01235  pyruv_carbox: pyruvate carboxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  193.5   0.0   1.3e-60   8.9e-58     621     744 ..       1     125 []       1     125 [] 0.99

  Alignments for each domain:
  == domain 1    score: 193.5 bits;  conditional E-value: 1.3e-60
   TIGR01235 621 nyPdnvvkkfvkqaaqsGidifrvfdslnylenlklgvdavkeagkvveaaicytGdildkakkkydlkyytelaeelekaGahilaikdmaGllkPaaaklliaalrekt.dlPihlhthdtsG 744
                 nyPdn v kf++qa+ sGidifrvfdslny+en+klgvdav  ag+ +e aicytGd+ d++k+kydl+yy+++a+el+  G h laikdmaGll P+aa +l++alr++   +Pih+hthdt+G
  MMETSP1137-20121227|4342_1   1 NYPDNLVYKFCEQAKTSGIDIFRVFDSLNYIENMKLGVDAVGAAGGFIEGAICYTGDVADPSKTKYDLEYYVNFARELVDLGVHSLAIKDMAGLLTPRAATMLVGALRKEFpTIPIHVHTHDTAG 125
                 8*************************************************************************************************************99***********98 PP

>> TIGR01108  oadA: oxaloacetate decarboxylase alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  119.9   0.0   3.5e-38   2.4e-35      87     204 ..       1     125 []       1     125 [] 0.95

  Alignments for each domain:
  == domain 1    score: 119.9 bits;  conditional E-value: 3.5e-38
   TIGR01108  87 hyaDDvvekfvkkavenGldvfrifDalnDarnlkkaieavkkhgahvqgalsyt...isPvht...lekylelakellelgvDsiaikDmaGlLtPkaayeLvsalkkeve.lpvelhshattg 204
                 +y+D++v kf ++a + G+d+fr+fD+ln   n+k  ++av   g +++ga++yt     P  t   le+y+++a+el++lgv s+aikDmaGlLtP+aa  Lv al+ke++ +p+++h+h t+g
  MMETSP1137-20121227|4342_1   1 NYPDNLVYKFCEQAKTSGIDIFRVFDSLNYIENMKLGVDAVGAAGGFIEGAICYTgdvADPSKTkydLEYYVNFARELVDLGVHSLAIKDMAGLLTPRAATMLVGALRKEFPtIPIHVHTHDTAG 125
                 6*****************************************************95544687776669*******************************************989*********97 PP

>> TIGR02146  LysS_fung_arch: homocitrate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.8   0.0   7.1e-09   4.9e-06     134     195 ..      64     125 .]      55     125 .] 0.92

  Alignments for each domain:
  == domain 1    score: 23.8 bits;  conditional E-value: 7.1e-09
   TIGR02146 134 srsdledLlkvvktakeagvdrvsiaDtvGvatPrrvyelvrkvkrvvpgvdieihahnDlG 195
                 ++ dle+ ++  +   ++gv  ++i D  G +tPr +  lv  ++++ p+++i++h+h+  G
  MMETSP1137-20121227|4342_1  64 TKYDLEYYVNFARELVDLGVHSLAIKDMAGLLTPRAATMLVGALRKEFPTIPIHVHTHDTAG 125
                 56799999999999999*****************************************8765 PP

>> TIGR02660  nifV_homocitr: homocitrate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.0     0.083        57     142     170 ..       5      33 ..       3      41 .. 0.85
   2 !   20.8   0.0   6.3e-08   4.3e-05     138     197 ..      65     125 .]      51     125 .] 0.89

  Alignments for each domain:
  == domain 1    score: 0.6 bits;  conditional E-value: 0.083
   TIGR02660 142 eflvelaevakeagakRlRfaDtvgvldP 170
                 + + ++ e+ak +g++ +R+ D +  ++ 
  MMETSP1137-20121227|4342_1   5 NLVYKFCEQAKTSGIDIFRVFDSLNYIEN 33 
                 5678999***************9987765 PP

  == domain 2    score: 20.8 bits;  conditional E-value: 6.3e-08
   TIGR02660 138 RadeeflvelaevakeagakRlRfaDtvgvldPfstyelvkalraal.elelElHaHnDlG 197
                 + d e+ v++a+ + + g++ l + D  g+l+P ++  lv alr+++ ++++ +H+H+  G
  MMETSP1137-20121227|4342_1  65 KYDLEYYVNFARELVDLGVHSLAIKDMAGLLTPRAATMLVGALRKEFpTIPIHVHTHDTAG 125
                 4478999**************************************99789*******9765 PP

>> TIGR02090  LEU1_arch: isopropylmalate/citramalate/homocitrate synthases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.0   1.6e-07   0.00011     135     195 ..      63     124 ..      52     125 .] 0.92

  Alignments for each domain:
  == domain 1    score: 19.3 bits;  conditional E-value: 1.6e-07
   TIGR02090 135 atrtdidflikvfkkaeeagadrinvadtvGvltPekmeelikklkekvk.lpvsvhchndf 195
                  t+ d+++ ++  ++ ++ g   +++ d  G ltP++ + l+  l+++   +p+ vh h+  
  MMETSP1137-20121227|4342_1  63 KTKYDLEYYVNFARELVDLGVHSLAIKDMAGLLTPRAATMLVGALRKEFPtIPIHVHTHDTA 124
                 477899******************************************9889*******965 PP

>> TIGR03217  4OH_2_O_val_ald: 4-hydroxy-2-oxovalerate aldolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   2.3e-05     0.016     143     197 ..      69     122 ..      62     125 .] 0.90

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 2.3e-05
   TIGR03217 143 eklaeqakllesyGadvvyvvdsaGallpedvkdrvkalkealkpetevGlhahe 197
                 e  ++ a+ l + G + + + d aG l+p+ ++  v al++++  ++ + +h+h+
  MMETSP1137-20121227|4342_1  69 EYYVNFARELVDLGVHSLAIKDMAGLLTPRAATMLVGALRKEFP-TIPIHVHTHD 122
                 66678899999*******************************97.9999999997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (125 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       125  (0.0304729); expected 82.0 (0.02)
Passed bias filter:                      124  (0.0302292); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.18u 0.17s 00:00:00.35 Elapsed: 00:00:00.36
# Mc/sec: 458.30
//
Query:       MMETSP1137-20121227|4343_1  [L=454]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (454 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       168  (0.0409556); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.14s 00:00:00.47 Elapsed: 00:00:00.46
# Mc/sec: 1302.68
//
Query:       MMETSP1137-20121227|4344_1  [L=404]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        2.9    5.9   9.2       0.44    8.6   2.6    2.3  2  TIGR03141 cytochro_ccmD: heme exporter protein CcmD


Domain annotation for each model (and alignments):
>> TIGR03141  cytochro_ccmD: heme exporter protein CcmD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.2      0.08   3.3e+02      33      46 ..       4      17 ..       2      18 .. 0.84
   2 ?    8.6   2.6   0.00011      0.44      28      47 .]      23      42 ..      22      42 .. 0.93

  Alignments for each domain:
  == domain 1    score: -0.6 bits;  conditional E-value: 0.08
   TIGR03141 33 rrllrelrrlqare 46
                +r++r lr+ ++re
  MMETSP1137-20121227|4344_1  4 KRIKRALRESLQRE 17
                68899999999987 PP

  == domain 2    score: 8.6 bits;  conditional E-value: 0.00011
   TIGR03141 28 slldrrrllrelrrlqarea 47
                ++++++rl+rel+r+qa+ea
  MMETSP1137-20121227|4344_1 23 VMREKKRLKRELERQQAQEA 42
                799**************996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (404 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       325  (0.0792296); expected 82.0 (0.02)
Passed bias filter:                      128  (0.0312043); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.19s 00:00:00.54 Elapsed: 00:00:00.44
# Mc/sec: 1211.90
//
Query:       MMETSP1137-20121227|4345_1  [L=77]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (77 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        64  (0.0156021); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.14s 00:00:00.28 Elapsed: 00:00:00.33
# Mc/sec: 307.97
//
Query:       MMETSP1137-20121227|4347_1  [L=219]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (219 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       118  (0.0287665); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.14s 00:00:00.33 Elapsed: 00:00:00.34
# Mc/sec: 850.17
//
Query:       MMETSP1137-20121227|4349_1  [L=758]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (758 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       195  (0.0475378); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.50u 0.16s 00:00:00.66 Elapsed: 00:00:00.48
# Mc/sec: 2084.33
//
Query:       MMETSP1137-20121227|4350_1  [L=711]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (711 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        79  (0.0192589); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.17s 00:00:00.60 Elapsed: 00:00:00.42
# Mc/sec: 2234.39
//
Query:       MMETSP1137-20121227|4351_1  [L=1220]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1220 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        56  (0.0136519); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.65u 0.13s 00:00:00.78 Elapsed: 00:00:00.81
# Mc/sec: 1987.98
//
Query:       MMETSP1137-20121227|4352_1  [L=458]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (458 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        69  (0.0168211); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.14s 00:00:00.44 Elapsed: 00:00:00.45
# Mc/sec: 1343.36
//
Query:       MMETSP1137-20121227|4353_1  [L=102]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (102 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        99  (0.0241346); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.16s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 464.24
//
Query:       MMETSP1137-20121227|4354_1  [L=340]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        1.3    4.4  12.6        1.6    4.0   8.7    1.0  1  TIGR00927 2A1904: K+-dependent Na+/Ca+ exchanger


Domain annotation for each model (and alignments):
>> TIGR00927  2A1904: K+-dependent Na+/Ca+ exchanger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   8.7   0.00039       1.6     730     884 ..     105     256 ..      76     287 .. 0.62

  Alignments for each domain:
  == domain 1    score: 4.0 bits;  conditional E-value: 0.00039
   TIGR00927 730 papedkgdqeedpgsqgdv.aeaeakgertgeeaeaeteaegekdeesggeaeqegeseekaeeeseGeieaerkgedegegeieakeaevkGeeeeeeveaeeeteaeGdedegeieaeeeGeekededegeieakeevevegdedet.eieaeee 884
                    ++ gd+   p +++ v a a++k    ++ + +++ + g+k ++++  a + g++++++ ++  G +    + + +g++  +  + e +G+    ++ea ++ +++ +   +++++++ G   +   e  ++++++v++++++      +a+e+
  MMETSP1137-20121227|4354_1 105 SEDDSSGDDAGRPLARKPVkASAQSKRT-SKNVGSTNALSFGRKLQQREAGALNFGGKNQRGSAKGSGRTSRRSRTQRDGKSGLDVSDDEDDGD----DIEACKGLDDKCQRSSEQTDTQKRGTRGKSGRERGAQSHQQVQKRSKRGSKsARQADET 256
                 2234456666666555443033333333.33344555678889999999999999999999999999998888888888888888777667776....67777777777777777777777777777777777777666666655422202222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (340 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        65  (0.0158459); expected 82.0 (0.02)
Passed bias filter:                       39  (0.00950756); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.29u 0.17s 00:00:00.46 Elapsed: 00:00:00.50
# Mc/sec: 897.53
//
Query:       MMETSP1137-20121227|4355_1  [L=240]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (240 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       109  (0.0265724); expected 82.0 (0.02)
Passed bias filter:                       96  (0.0234032); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.11s 00:00:00.34 Elapsed: 00:00:00.39
# Mc/sec: 812.24
//
Query:       MMETSP1137-20121227|4356_1  [L=117]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.013   11.0  10.2      0.015   10.8   7.1    1.0  1  TIGR02168 SMC_prok_B: chromosome segregation protein SMC
      0.027   11.3   0.4      0.035   11.0   0.3    1.1  1  TIGR00718 sda_alpha: L-serine dehydratase, iron-sulfur-dependent, alpha subunit


Domain annotation for each model (and alignments):
>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   7.1   7.2e-06     0.015     213     321 ..       6     114 ..       3     117 .] 0.88

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 7.2e-06
   TIGR02168 213 ekykelkeelrelelallvlrleelkeeleeleeelkeaeeeleeleaelkeleeeleelrlekseleeeleelqkelqelkaeisrleqeieilkerleqlekeleel 321
                 ++++ l++e++++ ++ ++ + e + +e +e+++++ +a++e+ +++++l++le++l+e+ +  +e++ +++++ +e + l++++++ eq+i++l+  l+++++  e+ 
  MMETSP1137-20121227|4356_1   6 KEFRHLEQEIESAVHNQSAPSAEPRPDEPAETKSAEPAAASERPKAQQQLRRLEAKLKEKIDLCAEKDLQIAAVLNEGEMLSKRQAEQEQTIKKLRVALREAQTAAEQH 114
                 5789999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999888877765 PP

>> TIGR00718  sda_alpha: L-serine dehydratase, iron-sulfur-dependent, alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.3   1.7e-05     0.035       5      52 ..      62     110 ..      58     116 .. 0.78

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 1.7e-05
   TIGR00718   5 vkelievtkekqikisdlvleeeikvsektk.eeirkkldavldvmeaa 52 
                  ke i+++ ek+++i  ++ e e+   ++++ e+  kkl   l   ++a
  MMETSP1137-20121227|4356_1  62 LKEKIDLCAEKDLQIAAVLNEGEMLSKRQAEqEQTIKKLRVALREAQTA 110
                 799********************98777665267788888777655544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (117 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       301  (0.0733788); expected 82.0 (0.02)
Passed bias filter:                      165  (0.0402243); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.16u 0.15s 00:00:00.31 Elapsed: 00:00:00.30
# Mc/sec: 514.76
//
Query:       MMETSP1137-20121227|4358_1  [L=164]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0043   14.9   0.1      0.009   13.8   0.0    1.5  2  TIGR02246 TIGR02246: conserved hypothetical protein


Domain annotation for each model (and alignments):
>> TIGR02246  TIGR02246: conserved hypothetical protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0      0.37   1.5e+03      84      99 ..      25      40 ..      23      51 .. 0.74
   2 !   13.8   0.0   2.2e-06     0.009      67     123 ..     110     162 ..     101     164 .] 0.85

  Alignments for each domain:
  == domain 1    score: -3.1 bits;  conditional E-value: 0.37
   TIGR02246 84 haeatitatgkkraaa 99
                h++ t ++tg ++a++
  MMETSP1137-20121227|4358_1 25 HLRTTLMSTGAAPAMQ 40
                7778888888887776 PP

  == domain 2    score: 13.8 bits;  conditional E-value: 2.2e-06
   TIGR02246  67 evdvievrvlgpdlaivhaeatitatgkkraaaraavrltlvavkadgrWllaadqn 123
                 ++   +vr+lg+ +a++  +  + ++ + +++++ +v ++    +adg Wl  +++ 
  MMETSP1137-20121227|4358_1 110 TIASPHVRMLGDSAAVISYVRIVQSPSNIQTSQETRVWQK----QADGHWLNVHFHR 162
                 566679***********99999999999999999988888....*******999996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (164 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        96  (0.0234032); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.18u 0.12s 00:00:00.30 Elapsed: 00:00:00.30
# Mc/sec: 721.54
//
Query:       MMETSP1137-20121227|4359_1  [L=161]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-34  116.8   0.3    1.8e-34  116.4   0.2    1.2  1  TIGR00060 L18_bact: ribosomal protein L18


Domain annotation for each model (and alignments):
>> TIGR00060  L18_bact: ribosomal protein L18
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  116.4   0.2   4.5e-38   1.8e-34       8     114 .]      55     161 .]      47     161 .] 0.89

  Alignments for each domain:
  == domain 1    score: 116.4 bits;  conditional E-value: 4.5e-38
   TIGR00060   8 RkkRirkklretgeanrprlvvfrsnrhiyaqviddsksevlasastlekklk.ltgnkdaakkvGklvAerllkkgikdvvfDrgGykYHGrvaalAeaaReaGlnf 114
                 R++  + +   ++ + r rl v+r+n+hiy q+idd+k+ v+a+astle + k + gn +aa +vGk + er+++kg+++v fDr+G kYHGrvaalA++aReaGl f
  MMETSP1137-20121227|4359_1  55 RHHEHVMRY-XRSADGRLRLCVVRTNNHIYGQIIDDTKGFVIAAASTLEGEEKkYGGNCEAALEVGKRLGERAKDKGVEKVWFDRNGHKYHGRVAALADGAREAGLSF 161
                 443333333.256679********************************987776****************************************************87 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (161 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       190  (0.0463189); expected 82.0 (0.02)
Passed bias filter:                      139  (0.0338859); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.18u 0.13s 00:00:00.31 Elapsed: 00:00:00.40
# Mc/sec: 531.26
//
Query:       MMETSP1137-20121227|4361_1  [L=255]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (255 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       121  (0.0294978); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.11s 00:00:00.32 Elapsed: 00:00:00.66
# Mc/sec: 509.96
//
Query:       MMETSP1137-20121227|4362_1  [L=226]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (226 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       126  (0.0307167); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.10s 00:00:00.32 Elapsed: 00:00:00.55
# Mc/sec: 542.36
//
Query:       MMETSP1137-20121227|4363_1  [L=131]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (131 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       147  (0.0358362); expected 82.0 (0.02)
Passed bias filter:                      120  (0.029254); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.14s 00:00:00.31 Elapsed: 00:00:00.38
# Mc/sec: 455.02
//
Query:       MMETSP1137-20121227|4366_1  [L=292]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (292 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        86  (0.0209654); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.16s 00:00:00.38 Elapsed: 00:00:00.37
# Mc/sec: 1041.64
//
Query:       MMETSP1137-20121227|4367_1  [L=398]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00049   17.3   1.1    0.00053   17.2   0.1    1.5  2  TIGR00599 rad18: DNA repair protein rad18


Domain annotation for each model (and alignments):
>> TIGR00599  rad18: DNA repair protein rad18
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.1   1.3e-07   0.00053     169     231 ..      16      75 ..       5     105 .. 0.72
   2 ?   -3.2   0.1       0.2   8.3e+02     211     223 ..     186     198 ..     164     230 .. 0.50

  Alignments for each domain:
  == domain 1    score: 17.2 bits;  conditional E-value: 1.3e-07
   TIGR00599 169 dkdyrsekpdedlvqCPiCsqlvkekaverhldseClgspsagasktkPieskdssksssrls 231
                 d++ rs+    ++ +CPiC++++  +a++ h ds C +  +   s  kP++ +  +++++r  
  MMETSP1137-20121227|4367_1  16 DAQERSDAILAQVGNCPICNRVFSVDAIQEHADS-CAARLEK-RSAGKPTADRRRQAAAAR-A 75 
                 555566666678899******************9.9988665.889999999855544443.3 PP

  == domain 2    score: -3.2 bits;  conditional E-value: 0.2
   TIGR00599 211 gasktkPieskds 223
                 +a ++ P ++  s
  MMETSP1137-20121227|4367_1 186 PAASSWPCQEDAS 198
                 2222222222211 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (398 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        99  (0.0241346); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.31u 0.16s 00:00:00.47 Elapsed: 00:00:00.43
# Mc/sec: 1221.67
//
Query:       MMETSP1137-20121227|4368_1  [L=89]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (89 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        25  (0.00609459); expected 82.0 (0.02)
Passed bias filter:                       22  (0.00536324); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.10s 00:00:00.24 Elapsed: 00:00:00.31
# Mc/sec: 378.94
//
Query:       MMETSP1137-20121227|4369_1  [L=1503]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1503 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       152  (0.0370551); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.84u 0.17s 00:00:01.01 Elapsed: 00:00:01.08
# Mc/sec: 1836.85
//
Query:       MMETSP1137-20121227|4371_1  [L=533]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.8e-14   50.8   0.0    4.9e-14   50.0   0.0    1.4  1  TIGR03162 ribazole_cobC: alpha-ribazole phosphatase


Domain annotation for each model (and alignments):
>> TIGR03162  ribazole_cobC: alpha-ribazole phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.0   0.0   1.2e-17   4.9e-14      40     172 ..     341     478 ..     316     481 .. 0.87

  Alignments for each domain:
  == domain 1    score: 50.0 bits;  conditional E-value: 1.2e-17
   TIGR03162  40 edvkfdavvsSplsRcrelAella...eklklpiekddrLrEmdfGdwEgksydeisekyp.eldawakdlaharvp..gGEsvadfsqRveefleelakeekenvlivtHgGvirallahllglpleqllsieveygs 172
                 + ++   v++  l+R   +Ae l+     +k ++   +rL+E+  G+ +  syd+++ kyp e++a ++d  h+r p  gGEs+ d+  R +e++  l +   ++v++v    v r+l+ +++g +l +l  +ev+ g 
  MMETSP1137-20121227|4371_1 341 TTAHRAMVLAGTLKRYDMMAEELSkeaGGRKRKVLHIQRLNELCAGSLDSLSYDQMKAKYPnEFKARLADKLHYRYPgvGGESYTDVIMRLQETVLLLEQL-RNDVIVVCDRAVCRVLIGYFHGTDLPELPYMEVKGGV 478
                 45667789999************94444567888899***************************************9445***************999999.88999999*******************9999998775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (533 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       137  (0.0333983); expected 82.0 (0.02)
Passed bias filter:                      122  (0.0297416); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.14s 00:00:00.54 Elapsed: 00:00:00.62
# Mc/sec: 1134.68
//
Query:       MMETSP1137-20121227|4372_1  [L=284]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (284 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       102  (0.0248659); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.16s 00:00:00.41 Elapsed: 00:00:00.34
# Mc/sec: 1102.50
//
Query:       MMETSP1137-20121227|4373_1  [L=187]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (187 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        68  (0.0165773); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.16s 00:00:00.34 Elapsed: 00:00:00.43
# Mc/sec: 574.00
//
Query:       MMETSP1137-20121227|4374_1  [L=467]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-14   51.8   0.3    4.1e-08   30.6   0.0    3.8  2  TIGR03547 muta_rot_YjhT: mutatrotase, YjhT family
    1.2e-09   35.6   0.0    1.3e-06   25.6   0.0    2.6  2  TIGR03548 mutarot_permut: cyclically-permuted mutatrotase family protein


Domain annotation for each model (and alignments):
>> TIGR03547  muta_rot_YjhT: mutatrotase, YjhT family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.0   1.4e-06     0.003      22      98 ..     164     241 ..     153     247 .. 0.76
   2 !   30.6   0.0     2e-11   4.1e-08      34     144 ..     302     410 ..     277     426 .. 0.70

  Alignments for each domain:
  == domain 1    score: 14.6 bits;  conditional E-value: 1.4e-06
   TIGR03547  22 vGLGsaG..ksfykldlkkk..ekgWkkia..efpgaareqavaavvdgklyvFgGvgkeesesslqvlddvykydpkknsWe 98 
                  G G +G  ++++ ld+ k    + W+++     + ++r+ a+ ++v+++l++FgG   e     ++ l+d++ +d k+  W+
  MMETSP1137-20121227|4374_1 164 GGRGISGelNDLWILDKAKAleGSSWTHVVpeGQTPGHRQSATLTAVEDHLFMFGGRHGE-----MTFLNDTWLFDVKTLRWT 241
                 46666663357888998775225679887422345568999**************97655.....999************997 PP

  == domain 2    score: 30.6 bits;  conditional E-value: 2e-11
   TIGR03547  34 ldlkkkekgWkkiaefpgaare.qavaavvdgklyvFgGvgkeesesslqvlddvykydpkknsWekle..trsPvgllGasaveleegkililGGvn..keiFdkyladisaadk 144
                 +d+k +    +++      ar+ + ++a+ d  +yvFgG+  +        ++d ++yd++kn W++++   ++P g +G++     ++++ +lGG +   + Fd++l+  +++++
  MMETSP1137-20121227|4374_1 302 FDVKTRTWSLQEARGKSPPARSgHCACAMGDTTMYVFGGNTTK------ASFNDLWSYDTTKNAWQHVKphGEPPSGRVGHTIN-AIGTRLFVLGGRDyaTNRFDSFLHVFETVAQ 410
                 344444444444444344445505666777789******9887......679**************99722469*******877.8899*******6622678****987777665 PP

>> TIGR03548  mutarot_permut: cyclically-permuted mutatrotase family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.9   0.0    0.0003      0.62     157     203 ..     198     245 ..     151     267 .. 0.64
   2 !   25.6   0.0   6.2e-10   1.3e-06      68     232 ..     277     448 ..     274     464 .. 0.65

  Alignments for each domain:
  == domain 1    score: 6.9 bits;  conditional E-value: 0.0003
   TIGR03548 157 fPgeaRvqpvavalknelYvfggg..daeaytdgyayslkknkWekvaa 203
                  Pg  R+ + + a +++l++fgg+  + +   d + +++k+ +W+ v  
  MMETSP1137-20121227|4374_1 198 TPG-HRQSATLTAVEDHLFMFGGRhgEMTFLNDTWLFDVKTLRWTCVFE 245
                 455.478888899999******7511566779************99876 PP

  == domain 2    score: 25.6 bits;  conditional E-value: 6.2e-10
   TIGR03548  68 svsveegivyvgGsneeeslsdvlrlsldekkealivetlpslplaldngvatyl.dgklyvalgnangkpsnklyllnletkeleelpdf..PgeaRvqpvavalknelYvfgggd.aeaytdgy..ayslkknkWekvaa..vlsdeepisllGaasvklneskllviGGv 232
                 +v + e+++  gGs     ++d+  + ++ ++ +l  e  ++ p a +   a+ + d ++yv +gn+     n l++++  ++ +++++    P ++Rv     a    l+v+gg+d a+   d +   ++   ++W kv+      d +   l  +      e  ll++GG+
  MMETSP1137-20121227|4374_1 277 AVRIGERVLIFGGSAPGRCFNDLHWFDVKTRTWSL-QEARGKSPPARSGHCACAMgDTTMYVFGGNTTKASFNDLWSYDTTKNAWQHVKPHgePPSGRVGHTINAIGTRLFVLGGRDyATNRFDSFlhVFETVAQRWSKVNLhsSSADMKAPILRTGHCTDAHEGSLLLFGGL 448
                 46666777777888777778888888777777666.56666666666666666653567788888877777788888888888888776433366777777777778888888877733445566622455556888888875334444444455556667777777777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (467 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        59  (0.0143832); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.33u 0.16s 00:00:00.49 Elapsed: 00:00:00.51
# Mc/sec: 1208.61
//
Query:       MMETSP1137-20121227|4376_1  [L=244]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.5e-71  236.1   0.1    6.6e-71  235.9   0.1    1.0  1  TIGR00493 clpP: ATP-dependent Clp protease, proteolytic subunit ClpP
    0.00018   19.0   0.1     0.0035   14.8   0.0    2.1  2  TIGR00706 SppA_dom: signal peptide peptidase SppA, 36K type


Domain annotation for each model (and alignments):
>> TIGR00493  clpP: ATP-dependent Clp protease, proteolytic subunit ClpP
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  235.9   0.1   3.2e-74   6.6e-71      18     190 ..      69     243 ..      53     244 .] 0.95

  Alignments for each domain:
  == domain 1    score: 235.9 bits;  conditional E-value: 3.2e-74
   TIGR00493  18 fdiysrllkeriillsgevedevansivaqllfleaedpekdislyinspGGsitaGlaiydtmqfikpdvsticiGlaasmGafllaaGakGkrlalpnsrimihqpl..GGaqGqasdieiqakeilklkkklnellaektGqslekiekdterdfflsaeeakeyGlidkvl 190
                  d+y rl +erii+l+++++de++n+i+  +l+l++ed++k + +yinspGGs+t+G+ai+dtm+++k dvst  +GlaasmG++lla+GakGkrlalp+sr+mihqp   G +qGqa+di+++a++il++++k+ +  ++ tGq+ e++  d +rd+f sa++a+eyGlid+v+
  MMETSP1137-20121227|4376_1  69 VDLYNRLYRERIIFLGQQIDDEITNQIIGVMLYLDSEDTNKPMFMYINSPGGSVTSGFAIFDTMRHVKSDVSTXNVGLAASMGSLLLAGGAKGKRLALPHSRVMIHQPGtgGAIQGQAADIKVEAERILTIRDKVVDYYSQLTGQPRERVLIDLDRDNFFSAQQAMEYGLIDRVI 243
                 69**********************************************************************************************************532448***********************************************************98 PP

>> TIGR00706  SppA_dom: signal peptide peptidase SppA, 36K type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   1.7e-06    0.0035      18      82 ..      94     157 ..      80     171 .. 0.74
   2 ?    1.9   0.0     0.016        32     178     193 ..     227     242 ..     216     243 .. 0.88

  Alignments for each domain:
  == domain 1    score: 14.8 bits;  conditional E-value: 1.7e-06
   TIGR00706  18 kvlkklekikddksvkalvlkidSPGGtvvaseeiyeklkklkakkpvvasvgnvaaS.Ggyyial 82 
                 +++  +  + ++++ k + + i+SPGG+v+    i+++++++k    v +   ++aaS G+ ++a 
  MMETSP1137-20121227|4376_1  94 QIIGVMLYLDSEDTNKPMFMYINSPGGSVTSGFAIFDTMRHVK--SDVSTXNVGLAASmGSLLLAG 157
                 55555666778899999************************99..455544444444425555544 PP

  == domain 2    score: 1.9 bits;  conditional E-value: 0.016
   TIGR00706 178 vftgrqalklkLvDkl 193
                  f+++qa++ +L+D++
  MMETSP1137-20121227|4376_1 227 FFSAQQAMEYGLIDRV 242
                 69************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (244 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       104  (0.0253535); expected 82.0 (0.02)
Passed bias filter:                       96  (0.0234032); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.21u 0.15s 00:00:00.36 Elapsed: 00:00:00.35
# Mc/sec: 920.15
//
Query:       MMETSP1137-20121227|4377_1  [L=387]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (387 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       304  (0.0741102); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.16s 00:00:00.46 Elapsed: 00:00:00.52
# Mc/sec: 982.30
//
Query:       MMETSP1137-20121227|4378_1  [L=145]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.028   10.9   0.0      0.032   10.7   0.0    1.1  1  TIGR00497 hsdM: type I restriction-modification system, M subunit


Domain annotation for each model (and alignments):
>> TIGR00497  hsdM: type I restriction-modification system, M subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   7.8e-06     0.032     111     189 ..      13      90 ..       7     117 .. 0.83

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 7.8e-06
   TIGR00497 111 rdifdeiekstelgdgrskesvkglfkdldvsevklgssltirveklkklleaidtmeldeyekssidvfgdayeylia 189
                 +d  ++ +k t l      e+   l  dldv+   l    +  +  l   l + ++ +l+ + +s+   + d yey + 
  MMETSP1137-20121227|4378_1  13 KDTSKNFDKVTRLHCR-LAEEAYELALDLDVNTDXLSIDRKRFTLVLVSTLATDGSADLGTFDQSGEPSMLDQYEYAMY 90 
                 6666778888888766.5555667999**********999999*********************************763 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (145 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        66  (0.0160897); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.14u 0.14s 00:00:00.28 Elapsed: 00:00:00.48
# Mc/sec: 398.72
//
Query:       MMETSP1137-20121227|4379_1  [L=177]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (177 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        44  (0.0107265); expected 82.0 (0.02)
Passed bias filter:                       34  (0.00828864); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.16s 00:00:00.33 Elapsed: 00:00:00.35
# Mc/sec: 667.49
//
Query:       MMETSP1137-20121227|4380_1  [L=1509]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     6e-231  766.4   8.5    8.9e-97  322.9   0.2    4.0  4  TIGR00958 3a01208: antigen peptide transporter 2
   6.5e-215  713.0  17.5      1e-97  326.0   0.8    4.1  4  TIGR02204 MsbA_rel: ABC transporter, permease/ATP-binding protein
   2.1e-200  664.9  13.7    4.8e-91  303.8   0.9    4.1  4  TIGR02203 MsbA_lipidA: lipid A export permease/ATP-binding protein MsbA
   4.9e-158  525.3  14.3    1.2e-76  256.3   0.5    4.1  4  TIGR01846 type_I_sec_HlyB: type I secretion system ATPase
   8.4e-150  498.3  21.2    7.1e-72  240.7   1.6    4.1  4  TIGR03797 NHLM_micro_ABC2: NHLM bacteriocin system ABC transporter, ATP-binding protein
   1.2e-142  474.5  13.2    2.6e-70  235.3   0.3    4.1  4  TIGR03796 NHLM_micro_ABC1: NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein
   1.9e-135  450.7  14.1      2e-67  225.8   0.3    4.0  4  TIGR03375 type_I_sec_LssB: type I secretion system ATPase
   1.5e-129  431.1   5.9    2.3e-66  222.5   0.6    2.2  2  TIGR01192 chvA: glucan exporter ATP-binding protein
   2.6e-123  410.6  17.1    2.8e-61  205.9   0.4    4.1  4  TIGR02857 CydD: thiol reductant ABC exporter, CydD subunit
   1.6e-122  408.2   0.2    2.3e-57  192.8   0.0    3.3  3  TIGR01193 bacteriocin_ABC: ABC-type bacteriocin transporter
   9.9e-115  381.9  12.9    2.2e-58  195.9   1.2    3.3  3  TIGR01842 type_I_sec_PrtD: type I secretion system ATPase
    1.1e-97  325.7   2.6    7.2e-49  164.6   0.2    2.6  2  TIGR02868 CydC: thiol reductant ABC exporter, CydC subunit
    3.3e-79  264.6   4.2    7.4e-39  130.8   0.0    3.5  4  TIGR00957 MRP_assoc_pro: multi drug resistance-associated protein (MRP)
    9.4e-79  262.1   0.3    9.5e-39  131.0   0.1    2.3  2  TIGR00972 3a0107s01c2: phosphate ABC transporter, ATP-binding protein
    6.2e-70  233.9   0.3    2.8e-34  116.6   0.1    2.3  2  TIGR01186 proV: glycine betaine/L-proline transport ATP binding subunit
    9.9e-70  233.0   0.7    3.5e-34  116.1   0.2    2.2  2  TIGR02314 ABC_MetN: D-methionine ABC transporter, ATP-binding protein
    2.9e-68  227.7   2.8    1.1e-34  117.7   0.2    2.4  2  TIGR03864 PQQ_ABC_ATP: ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system
    1.5e-64  215.6   2.5    4.2e-33  112.7   0.1    2.3  2  TIGR00968 3a0106s01: sulfate ABC transporter, ATP-binding protein
    8.5e-64  212.9   0.4    1.2e-31  107.8   0.1    2.6  2  TIGR01277 thiQ: thiamine ABC transporter, ATP-binding protein
    2.6e-63  211.9   3.5    7.1e-34  115.1   0.4    2.3  2  TIGR01187 potA: polyamine ABC transporter, ATP-binding protein
    3.9e-61  204.4   1.5    1.4e-31  107.6   0.2    2.6  2  TIGR02315 ABC_phnC: phosphonate ABC transporter, ATP-binding protein
      4e-60  201.7   2.8    1.8e-30  104.2   0.4    2.2  2  TIGR03265 PhnT2: putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein
    9.1e-60  199.8   2.1    1.7e-30  104.1   0.3    2.4  2  TIGR02982 heterocyst_DevA: ABC exporter ATP-binding subunit, DevA family
    3.1e-59  198.1   1.4    5.7e-30  102.4   0.1    2.7  2  TIGR02673 FtsE: cell division ATP-binding protein FtsE
    6.8e-58  194.4   1.6    1.4e-28   98.0   0.1    2.3  2  TIGR02142 modC_ABC: molybdate ABC transporter, ATP-binding protein
      7e-57  190.5   2.9    1.7e-28   97.7   0.1    2.8  2  TIGR00960 3a0501s02: type II secretory pathway family protein
    1.5e-56  188.9   0.0    3.8e-28   96.2   0.0    2.4  2  TIGR03608 L_ocin_972_ABC: putative bacteriocin export ABC transporter, lactococcin 972 group
    6.5e-56  187.6   5.2    5.1e-30  102.6   0.2    2.6  2  TIGR01188 drrA: daunorubicin resistance ABC transporter, ATP-binding protein
    2.9e-55  185.0   0.2    3.3e-27   93.3   0.0    3.3  3  TIGR02211 LolD_lipo_ex: lipoprotein releasing system, ATP-binding protein
    1.8e-54  182.5   4.8    2.5e-28   96.9   0.2    2.7  2  TIGR03873 F420-0_ABC_ATP: proposed F420-0 ABC transporter, ATP-binding protein
    5.3e-54  180.9   5.2    8.4e-28   95.2   0.9    2.6  2  TIGR03410 urea_trans_UrtE: urea ABC transporter, ATP-binding protein UrtE
    2.3e-53  179.3   3.4    1.9e-26   90.8   0.2    2.3  2  TIGR03258 PhnT: 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT
    4.6e-53  177.8   0.7    4.6e-27   92.7   0.2    2.7  2  TIGR02770 nickel_nikD: nickel import ATP-binding protein NikD
    3.4e-51  171.3   1.4    1.3e-25   87.8   0.1    2.7  2  TIGR01166 cbiO: cobalt ABC transporter, ATP-binding protein
    7.1e-51  171.0   3.7    1.8e-25   87.8   0.2    2.8  2  TIGR02769 nickel_nikE: nickel import ATP-binding protein NikE
    4.2e-50  168.1   1.8    8.7e-26   88.5   0.1    3.4  2  TIGR03005 ectoine_ehuA: ectoine/hydroxyectoine ABC transporter, ATP-binding protein EhuA
    2.3e-43  146.2   1.4    9.6e-22   75.5   0.2    2.6  2  TIGR01184 ntrCD: nitrate ABC transporter, ATP-binding proteins C and D
    6.3e-43  144.3   0.1    7.8e-21   71.1   0.0    2.7  2  TIGR01271 CFTR_protein: cystic fibrosis transmembrane conductor regulator (CFTR)
    1.6e-42  143.7   0.6    8.9e-21   71.9   0.1    2.3  2  TIGR00955 3a01204: pigment precursor permease
      4e-41  138.7   0.6    4.7e-20   69.8   0.1    2.7  2  TIGR02324 CP_lyasePhnL: phosphonate C-P lyase system protein PhnL
    3.1e-40  135.9   0.6    1.2e-19   68.6   0.0    2.5  2  TIGR01978 sufC: FeS assembly ATPase SufC
    3.2e-40  136.1   0.5    7.8e-20   69.0   0.1    2.3  2  TIGR03415 ABC_choXWV_ATP: choline ABC transporter, ATP-binding protein
      4e-40  135.5   0.1    1.7e-20   71.1   0.0    2.3  2  TIGR01288 nodI: nodulation ABC transporter NodI
    2.9e-39  132.7   0.3    6.5e-19   65.6   0.1    2.3  2  TIGR02633 xylG: D-xylose ABC transporter, ATP-binding protein
    1.9e-38  130.3   0.5    6.4e-19   66.4   0.1    2.3  2  TIGR03411 urea_trans_UrtD: urea ABC transporter, ATP-binding protein UrtD
    2.5e-38  129.6   1.0    4.4e-19   66.8   0.0    2.7  2  TIGR01189 ccmA: heme ABC exporter, ATP-binding protein CcmA
    9.1e-35  118.4   2.4    5.3e-19   66.6   0.2    2.5  2  TIGR03522 GldA_ABC_ATP: gliding motility-associated ABC transporter ATP-binding subunit GldA
    6.1e-34  115.5   0.1    2.4e-17   61.2   0.0    2.7  2  TIGR03740 galliderm_ABC: lantibiotic protection ABC transporter, ATP-binding subunit
    1.9e-33  113.9   5.4    3.2e-18   64.1   0.3    3.1  2  TIGR03771 anch_rpt_ABC: anchored repeat-type ABC transporter, ATP-binding subunit
    3.4e-31  106.2   2.4    1.8e-12   44.4   0.1    4.1  4  TIGR03269 met_CoM_red_A2: methyl coenzyme M reductase system, component A2
    2.2e-30  103.6   0.0    3.4e-11   40.2   0.0    4.2  4  TIGR03719 ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family
    2.8e-30  101.9   0.6      6e-16   54.3   0.0    2.0  2  TIGR01257 rim_protein: rim ABC transporter
    5.5e-30  102.2   2.8    3.9e-14   49.9   0.0    3.8  4  TIGR01194 cyc_pep_trnsptr: cyclic peptide transporter
    2.9e-27   93.2   0.0    2.7e-14   50.3   0.0    2.4  2  TIGR00954 3a01203: peroxysomal long chain fatty acyl transporter
    5.1e-26   89.5   9.1    3.1e-13   47.6   0.3    3.8  3  TIGR02323 CP_lyasePhnK: phosphonate C-P lyase system protein PhnK
    1.3e-18   63.9   3.8    1.4e-09   33.9   0.1    3.0  2  TIGR00956 3a01205: pleiotropic drug resistance family protein
    2.2e-16   57.1   2.6    5.8e-05   19.3   0.0    4.1  4  TIGR00630 uvra: excinuclease ABC subunit A
    7.7e-07   26.8   0.0     0.0074   13.8   0.0    2.6  2  TIGR00455 apsK: adenylylsulfate kinase
    0.00018   18.4   0.0       0.23    8.1   0.0    2.2  2  TIGR03238 dnd_assoc_3: DNA phosphorothioation-dependent restriction protein DptF
    0.00063   17.5   0.0       0.21    9.2   0.0    2.5  2  TIGR00152 TIGR00152: dephospho-CoA kinase
    0.00069   17.2   0.0       0.25    8.9   0.0    2.7  2  TIGR02322 phosphon_PhnN: phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN
      0.003   14.4   0.1       0.46    7.2   0.0    2.2  2  TIGR02525 plasmid_TraJ: plasmid transfer ATPase TraJ
     0.0058   14.1   0.0          2    5.8   0.0    2.4  2  TIGR00235 udk: uridine kinase
     0.0084   12.2   0.2        1.2    5.0   0.0    2.9  3  TIGR00929 VirB4_CagE: type IV secretion/conjugal transfer ATPase, VirB4 family
     0.0086   13.5   0.1       0.73    7.3   0.0    2.4  2  TIGR03263 guanyl_kin: guanylate kinase
  ------ inclusion threshold ------
      0.015   12.8   0.1       0.47    7.9   0.0    2.3  2  TIGR03598 GTPase_YsxC: ribosome biogenesis GTP-binding protein YsxC
      0.019   11.3   0.1       0.41    6.9   0.0    2.2  2  TIGR00602 rad24: checkpoint protein rad24
      0.028   12.2   2.9       0.82    7.3   0.2    2.6  2  TIGR03513 GldL_gliding: gliding motility-associated protein GldL


Domain annotation for each model (and alignments):
>> TIGR00958  3a01208: antigen peptide transporter 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.1   0.0   1.1e-22   6.5e-21     194     377 ..     135     318 ..      55     358 .. 0.86
   2 !  310.1   0.7   1.1e-94   6.4e-93     434     702 ..     475     751 ..     459     761 .. 0.91
   3 !   63.1   0.1   5.5e-20   3.3e-18     140     412 ..     852    1140 ..     831    1146 .. 0.82
   4 !  322.9   0.2   1.5e-98   8.9e-97     454     711 .]    1239    1504 ..    1220    1504 .. 0.94

  Alignments for each domain:
  == domain 1    score: 72.1 bits;  conditional E-value: 1.1e-22
   TIGR00958 194 dksvealakaiflltllslaSsllaglrgGsfeyamarinlriredlfksllrQdigFfdenktGeltSRlssDtstvseslslnvnvllrnlvkllgllifmlslSprLtlvtllalPlvllaekvfgkvyqklseevqeavakanqvaeEalsglrTVrSFaaEekEasrfkekleeilqln 377
                  ++ ++l+++ +ll ++ +a  + +g+  G  ++a+ r+ +  +++ +ks++rQd+ +fd+n+  el   +++  st+ + l ++v  l  n   +lg l++ +   p  ++v + + P+v+ a+  +++v q+ ++++q a a+a+  a+Eals++rT+  F+ Ee+ a+ +++ l++    +
  MMETSP1137-20121227|4380_1 135 AFDQDELTRQAVLLVVVGVALWFGTGIYMGATDIAKVRMMACYKKEYVKSIIRQDLSWFDTNNPSELAPGIGAAMSTIEDGLGNKVMQLFENSGTGLGCLGIAFYYNPWVSFVVVATFPVVMGAAGLMNHVQQNSTKNIQAAYAEAGGRANEALSSMRTIACFSLEERTAKLYESGLKRAEVAA 318
                 4568899************************************************************************************************************************************************************************999875443 PP

  == domain 2    score: 310.1 bits;  conditional E-value: 1.1e-94
   TIGR00958 434 vreLsevysellkavGasekvFeyldRkPqlel..sgtlapknleGkveFqdVsFsYPsrpdkpvlkdLtftlepGevvalVGPsGsGKStvaallenlYqPtgGqvllDgkplkeydhkylhrkvalVgqEPvlfsgsvreNiaYGltkte.deevtaaakaanahdFis.elekgydtevgekGsqlsgGqkqriAiARALvrkPrvLiLDeAtSALDaeveqllqe....sksaksrtvlliahrLstvekadkilvlkkgsvvelGthkqLme 702
                 +  +++  s ++ka  a+ kv   ++R P+++   +   + ++++G++e +dV F+YPs pd++v ++ ++ + +G+vval G sGsGKSt++ l+e++Y+P  G v  Dg++++ ++  +l+++++lVgqEPvlf g+v eNiaYG ++   +ee+ aaa++anah Fi+ +l++gy t+vg+ Gs lsgGqkqr+AiARA vr P+v +LDeAtSALD+++e+++q+     + +++rt + iahrLst+++adki+v++kg+vve Gt+++L +
  MMETSP1137-20121227|4380_1 475 LGLIGQNISPIVKARQAAVKVLRTIERMPTIDAfsTEGNTLTQVRGEIEVKDVYFAYPSAPDVQVCNGYSLHVPAGQVVALCGQSGSGKSTIINLVERFYDPHRGAVHFDGVDVRTLNVSWLRQQIGLVGQEPVLFVGTVAENIAYGKKDGAtQEEIEAAAEMANAHGFIKdKLPDGYGTQVGQGGSKLSGGQKQRVAIARAXVRXPAVXLLDEATSALDTASERVVQKaldsLMAKRKRTTITIAHRLSTIRNADKIAVVHKGQVVESGTYDKLLA 751
                 4555566778899999**************9862234456789*********************************************************************************************************99877*****************8469***********************************************88888887666689999***********************************9975 PP

  == domain 3    score: 63.1 bits;  conditional E-value: 5.5e-20
   TIGR00958  140 eeqsetad.....lllrLLkll.krdlkllllalvllvlsvlgevliPkytgrvidtllqdksvealakaiflltllslaSsllagl...rgGsfeyamarinlriredlfksllrQdigFfde..nktGeltSRlssDtstvseslslnvnvllrnlvkllgllifmls.lSprLtlvtllalPlvllaekv.fgkvyqklseevqeavak....anqvaeEalsglrTVrSFaaEekEasrfkekleeilqlnkkkalayalylwttellgllilvlvLayGgqlvle 412 
                  ++++++ d     +l rL kl  k d ++l+++ +l ++   ++ +i +   +++++l + +  +  + +++  +++ +   +++++   +  ++ +  +++++++r+  +++ l+Qd+g+fd+  n +GeltS l +  ++v  +  +++  llr++  l+++l++ +  + ++L+lv l ++P++ la +v +  +  ++++   ++ ak    a+  + E++ g+rTV SF+aE++  + + ek++e+    k +al+  l     + + l+++ +v +yGg l+ e
  MMETSP1137-20121227|4380_1  852 NGKKKR-DtsffgVLKRLNKLQaKGDSRYLIAGAFLSMIDGCINPAIGFIFVKLLTVLYEPNPDDIAKGSVIYGCVYIIIGVVAVAVitaETACLGIPGQHLTTNLRSLCMRTFLKQDMGYFDAesNSAGELTSFLEEKVTLVQAMNGEKIGTLLRTIFTLVSGLGLVFYfGYWQLSLVMLASVPIIALAMSVqMMVQLGATKQGAEKSGAKeeksAGSFIGEVVIGIRTVSSFSAEQTFFNMYCEKVDEMSGKGKVNALVGGLAAGLAKGVPLMVFGVVFYYGGTLLNE 1140
                  233333.24778899999998526688889999999999999***********99998887766666778888888877777666542226789****************************9633789************************************999872579*************99988724455667777778888872222456778******************************99999999999999999999999999999999998765 PP

  == domain 4    score: 322.9 bits;  conditional E-value: 1.5e-98
   TIGR00958  454 vFeyldRkPqlelsgt..lapknleGkveFqdVsFsYPsrpdkpvlkdLtftlepGevvalVGPsGsGKStvaallenlYqPtgGqvllDgkplkeydhkylhrkvalVgqEPvlfsgsvreNiaYG.ltktedeevtaaakaanahdFis.elekgydtevgekGsqlsgGqkqriAiARALvrkPrvLiLDeAtSALDaeveqllqe....sksaksrtvlliahrLstvekadkilvlkkgsvvelGthkqLmekedvykqlv 711 
                  +F+ l+R+  +++s t   +p    G ++ qdV F+YP+r d  + ++ t+ + +G+vval GPsGsGKSt++al+e++Y+P++G+v+lDg++++ ++  +l+++++lVgqEP+lf g+v eNiaYG ++ ++++e+  aa +anah+Fi  +l+++y+t+vg +G  lsgGqkqr+AiARALvrkP+vL+LDeAtSALD e+e+++q+    ++ ++++t + iahrLst++ ad i+v+++g+vve G+h+ L +++++y  lv
  MMETSP1137-20121227|4380_1 1239 LFDRLERQSAIDPSSTegARPASCAGDIQLQDVVFAYPTRLDYTICNGYTLHVPSGQVVALCGPSGSGKSTIIALVERFYDPQEGSVMLDGVDVRTLNVSWLRQQIGLVGQEPMLFVGTVAENIAYGkVEGCTQQEIEEAATKANAHSFIVeNLPQQYQTQVGIRGGKLSGGQKQRVAIARALVRKPAVLLLDEATSALDNESEKIVQAalddMMAKQKKTTITIAHRLSTIRGADLIAVINRGKVVERGNHTSLLQQRGIYFDLV 1504
                  799999999998877622699**********************************************************************************************************667799****************96269***********************************************98888887666689999********************************************9987 PP

>> TIGR02204  MsbA_rel: ABC transporter, permease/ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.7   0.0   2.2e-13   1.3e-11      54     236 ..     138     320 ..     104     349 .. 0.88
   2 !  312.7   0.7   1.8e-95   1.1e-93     287     573 ..     471     763 ..     453     765 .. 0.92
   3 !   41.9   0.2   1.8e-13   1.1e-11      65     229 ..     927    1100 ..     913    1131 .. 0.78
   4 !  326.0   0.8   1.7e-99     1e-97     284     575 ..    1212    1507 ..    1196    1508 .. 0.95

  Alignments for each domain:
  == domain 1    score: 41.7 bits;  conditional E-value: 2.2e-13
   TIGR02204  54 sellneafalllvvvlvlalatalrfylvsslGervvadlrkavfahllelspaffdknrsgevlsrltadttllksvvGaslsialrnlllliGalamlvitsvkltslvllavPlvllPillfgrrvrklsresqdrladasayagealeaiktvqayaseeaersrfdaavekayeaark 236
                 +++l++  +ll+vv + l ++t + +        r++a  +k+  + +++ + ++fd+n+ +e+   + a  + ++  +G  +   + n  + +G+l + ++ ++ ++ +v+++ P+v+    l+ +  ++ +++ q   a+a++ a+eal+ ++t+ +++ ee+ ++ +++ + +a  aa+ 
  MMETSP1137-20121227|4380_1 138 QDELTRQAVLLVVVGVALWFGTGIYMGATDIAKVRMMACYKKEYVKSIIRQDLSWFDTNNPSELAPGIGAAMSTIEDGLGNKVMQLFENSGTGLGCLGIAFYYNPWVSFVVVATFPVVMGAAGLMNHVQQNSTKNIQAAYAEAGGRANEALSSMRTIACFSLEERTAKLYESGLKRAEVAAVW 320
                 5678899999999999999999997777777778*************************************************************************************99999988888889999**********************************9998888666653 PP

  == domain 2    score: 312.7 bits;  conditional E-value: 1.8e-95
   TIGR02204 287 vagslgalsevlgelqraaGaaerliellkaksdikaPaqpkalpakvrgeiefeevkfayParpdqkaldgldltvrpGetvalvGPsGaGkstllelllrfydPqsGailldGvdlreldpeelrerlalvpqdsalfaasvleniryGrpd.asdeeveaaakaaeadefis.klpeGydtllGergvtLsGGqkqriaiarailkdapiLLLdeatsaLdaeseqlvqqaleelmk..grttlviahrLatvlkadrivvldkGriveqGthaeLia..kggLyarlar 573
                  a+ lg +++ ++ + +a  aa ++   ++  ++i+a +++ +  ++vrgeie+++v fayP+ pd ++ +g +l+v +G++val G sG+Gkst+++l+ rfydP++Ga+ +dGvd+r l+ + lr+++ lv q+++lf + v eni+yG+ d a++ee+eaaa+ a+a++fi+ klp+Gy t++G+ g +LsGGqkqr+aiara ++   + LLdeatsaLd+ se+ vq+al++lm+  +rtt+ iahrL+t+++ad+i+v+ kG++ve+Gt+++L+a  +gg + +la+
  MMETSP1137-20121227|4380_1 471 GAQQLGLIGQNISPIVKARQAAVKVLRTIERMPTIDAFSTEGNTLTQVRGEIEVKDVYFAYPSAPDVQVCNGYSLHVPAGQVVALCGQSGSGKSTIINLVERFYDPHRGAVHFDGVDVRTLNVSWLRQQIGLVGQEPVLFVGTVAENIAYGKKDgATQEEIEAAAEMANAHGFIKdKLPDGYGTQVGQGGSKLSGGQKQRVAIARAXVRXPAVXLLDEATSALDTASERVVQKALDSLMAkrKRTTITIAHRLSTIRNADKIAVVHKGQVVESGTYDKLLAigQGGRFYELAQ 763
                 2566788888899999****************************************************************************************************************************************987899****************757**************************************************************72257***********************************87334556666665 PP

  == domain 3    score: 41.9 bits;  conditional E-value: 1.8e-13
   TIGR02204   65 lvvvlvlalata.lrfylvsslGervvadlrkavfahllelspaffd..knrsgevlsrltadttllksvvGaslsialrnlllliGalamlvits.vkltslvllavPlvllPill.....fgrrvrklsresqdrladasayagealeaiktvqayaseeaersrfdaavek 229 
                   +++ v+a+a+  +    +   G+++ ++lr+      l+ + ++fd  +n++ge+ s l   +tl++++ G  +   lr +++l+ +l ++++    +l++++l++vP++ l + +     +g   + + +    +   a++++ge++  i+tv +++ e++  + + ++v++
  MMETSP1137-20121227|4380_1  927 YIIIGVVAVAVItAETACLGIPGQHLTTNLRSLCMRTFLKQDMGYFDaeSNSAGELTSFLEEKVTLVQAMNGEKIGTLLRTIFTLVSGLGLVFYFGyWQLSLVMLASVPIIALAMSVqmmvqLGATKQGAEKSGAKEEKSAGSFIGEVVIGIRTVSSFSAEQTFFNMYCEKVDE 1100
                  33444444544313455667779***********************8335789*************************************9998652799999********9887541111134444444444445556789******************99887777777765 PP

  == domain 4    score: 326.0 bits;  conditional E-value: 1.7e-99
   TIGR02204  284 avlvagslgalsevlgelqraaGaaerliellkaksdikaPaqpkalpakvrgeiefeevkfayParpdqkaldgldltvrpGetvalvGPsGaGkstllelllrfydPqsGailldGvdlreldpeelrerlalvpqdsalfaasvleniryGrpd.asdeeveaaakaaeadefi.sklpeGydtllGergvtLsGGqkqriaiarailkdapiLLLdeatsaLdaeseqlvqqaleelm..kgrttlviahrLatvlkadrivvldkGriveqGthaeLiakggLyarlarLq 575 
                    ++a+++g  s    + ++a  a   l++ l+ +s i+  +++ a pa+  g+i++++v fayP+r d++  +g  l+v +G++val GPsG+Gkst++ l+ rfydPq+G+++ldGvd+r l+ + lr+++ lv q+++lf + v eni+yG+++  +++e+e+aa++a+a+ fi ++lp+ y+t++G rg +LsGGqkqr+aiara++++  +LLLdeatsaLd ese+ vq al+ +m  +++tt+ iahrL+t++ ad i+v+++G++ve+G+h++L+++ g+y  l++ q
  MMETSP1137-20121227|4380_1 1212 VFFMAMGIGMASSTATDASKAKEALLALFDRLERQSAIDPSSTEGARPASCAGDIQLQDVVFAYPTRLDYTICNGYTLHVPSGQVVALCGPSGSGKSTIIALVERFYDPQEGSVMLDGVDVRTLNVSWLRQQIGLVGQEPMLFVGTVAENIAYGKVEgCTQQEIEEAATKANAHSFIvENLPQQYQTQVGIRGGKLSGGQKQRVAIARALVRKPAVLLLDEATSALDNESEKIVQAALDDMMakQKKTTITIAHRLSTIRGADLIAVINRGKVVERGNHTSLLQQRGIYFDLVQSQ 1507
                  45789******************************************************************************************************************************************************98458899*************8468************************************************************9944469******************************************9999866 PP

>> TIGR02203  MsbA_lipidA: lipid A export permease/ATP-binding protein MsbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.9   0.0   8.9e-11   5.4e-09      16     223 ..     100     310 ..      85     343 .. 0.86
   2 !  303.8   0.9   7.9e-93   4.8e-91     278     561 ..     462     757 ..     456     768 .. 0.87
   3 !   30.7   0.1     4e-10   2.4e-08      18     218 ..     886    1092 ..     876    1133 .. 0.77
   4 !  303.6   0.5   8.8e-93   5.3e-91     315     568 ..    1250    1506 ..    1204    1509 .] 0.88

  Alignments for each domain:
  == domain 1    score: 32.9 bits;  conditional E-value: 8.9e-11
   TIGR02203  16 lvlalvalvlvaatesllaallkplldegfse.....lekeevllavPllvvglvvlrGiasfvsdyllakvsnkvvrdlRkklfeklltlpsayfdkessgsllsrltfdseqvvsaatdvlkvlvretltvigllivllylsWqltlivvvllPvlallvrvvskrlrkiskeiqnsigeltkvveealqgyrvvklfggqeaeakRfdav 223
                 + + ++a+++  a  +l+++l++  ++ + ++      ++e + +av l+vvg++++ G + +++   +akv  +     +k+ ++ +++   + fd ++ ++l   +      + + + + ++ l  ++ t +g l + +y++  ++++vv+ +Pv+  ++  +++  ++ +k+iq + +e+   ++eal+  r +  f  +e  ak ++  
  MMETSP1137-20121227|4380_1 100 ICIGVIAACGCGACMPLVLVLFAGSIESAGQAsngafDQDELTRQAVLLVVVGVALWFGTGIYMGATDIAKVRMMA--CYKKEYVKSIIRQDLSWFDTNNPSELAPGIGAAMSTIEDGLGNKVMQLFENSGTGLGCLGIAFYYNPWVSFVVVATFPVVMGAAGLMNHVQQNSTKNIQAAYAEAGGRANEALSSMRTIACFSLEERTAKLYESG 310
                 446677777777777877777777776554444555445566678899***********************97665..567999***********************************999999*******************99*********************************************************9999988765 PP

  == domain 2    score: 303.8 bits;  conditional E-value: 7.9e-93
   TIGR02203 278 itamlalikplksLtnvsaklq...kglaaaesvfallDsppekd...eGtralervrGkvefrnvtfrypgd.drealdsislkveaGevvalvGrsGsGkstlvnllpRFyepdsGeillDgvdladlkLasLRrqvalvsqdvvLFddtiaenvaYgeleevdeaeveealaaaylkdlv.dklpeGldtevGengskLsGGqRqRlaiaRallkdaPiLiLDeatsaLDneseRlvqaaLerlm..kgRttlviahRLstiekaDrivvlddGkiverGtheeLla..rnGl 561
                 + a+l + +  ++L  + +++    k   aa +v+  +++ p  d   +  ++l +vrG++e+++v f yp++ d+++ ++ sl+v aG+vval G+sGsGkst++nl+ RFy+p++G + +Dgvd++ l+++ LR+q+ lv+q+ vLF +t+aen+aYg+++ ++++e+e+a+++a+++ ++ dklp+G  t+vG+ gskLsGGq+qR+aiaRa ++   + +LDeatsaLD+ seR vq+aL+ lm  ++Rtt+ iahRLsti++aD+i v+ +G++ve+Gt+ +Lla  + G 
  MMETSP1137-20121227|4380_1 462 LLALLSVQTGAQQLGLIGQNISpivKARQAAVKVLRTIERMPTIDafsTEGNTLTQVRGEIEVKDVYFAYPSApDVQVCNGYSLHVPAGQVVALCGQSGSGKSTIINLVERFYDPHRGAVHFDGVDVRTLNVSWLRQQIGLVGQEPVLFVGTVAENIAYGKKDGATQEEIEAAAEMANAHGFIkDKLPDGYGTQVGQGGSKLSGGQKQRVAIARAXVRXPAVXLLDEATSALDTASERVVQKALDSLMakRKRTTITIAHRLSTIRNADKIAVVHKGQVVESGTYDKLLAigQGGR 757
                 55666666666666655555441114444566666667776666622234467889***************97599**********************************************************************************************************9789*************************************************************944468***********************************98334454 PP

  == domain 3    score: 30.7 bits;  conditional E-value: 4e-10
   TIGR02203   18 lalvalvlvaatesllaallkplldegfselekeevllavPllvvglvvlrGiasfvsdyllakvsnkvvrdlRkklfeklltlpsayfdke..ssgsllsrltfdseqvvsaatdvlkvlvretltvigllivllyl.sWqltlivvvllPvlallvrv.vskrlrkiskeiqnsige....ltkvveealqgyrvvklfggqeaeak 218 
                  l+++  +++ a   ++++ll  l +    + +k +v++    +++g+v++  i+    + +l+   +++ ++lR   +  +l+    yfd e  s+g+l s l  +++ v  +  + + +l+r  +t+++ l +++y+  Wql+l++++ +P++al+++v +  +l   ++   +s ++    + + + e + g r v +f ++++  +
  MMETSP1137-20121227|4380_1  886 LSMIDGCINPAIGFIFVKLLTVLYEPNPDDIAKGSVIYGCVYIIIGVVAVAVITA--ETACLGIPGQHLTTNLRSLCMRTFLKQDMGYFDAEsnSAGELTSFLEEKVTLVQAMNGEKIGTLLRTIFTLVSGLGLVFYFgYWQLSLVMLASVPIIALAMSVqMMVQLGATKQGAEKSGAKeeksAGSFIGEVVIGIRTVSSFSAEQTFFN 1092
                  5566666677777778888888888888888888999999999999999999885..67799***************************96521678999999999999999999************9998888888736***************999862344555555444444443000144456777788888888888766555 PP

  == domain 4    score: 303.6 bits;  conditional E-value: 8.8e-93
   TIGR02203  315 ppekdeGtralervrGkvefrnvtfrypgd.drealdsislkveaGevvalvGrsGsGkstlvnllpRFyepdsGeillDgvdladlkLasLRrqvalvsqdvvLFddtiaenvaYgeleevdeaeveealaaaylkdl.vdklpeGldtevGengskLsGGqRqRlaiaRallkdaPiLiLDeatsaLDneseRlvqaaLerlm..kgRttlviahRLstiekaDrivvlddGkiverGtheeLlarnGlYasLhki 568 
                  +p   eG r      G++++++v f yp + d  + ++  l+v +G+vval G+sGsGkst+++l+ RFy+p++G+++lDgvd++ l+++ LR+q+ lv+q+ +LF +t+aen+aYg+ e  +++e+eea+++a+++++ v++lp+  +t+vG +g+kLsGGq+qR+aiaRal++   +L+LDeatsaLDnese+ vqaaL+ +m  +++tt+ iahRLsti+ aD i v++ Gk+verG h+ Ll+++G+Y  L + 
  MMETSP1137-20121227|4380_1 1250 DPSSTEGARP-ASCAGDIQLQDVVFAYPTRlDYTICNGYTLHVPSGQVVALCGPSGSGKSTIIALVERFYDPQEGSVMLDGVDVRTLNVSWLRQQIGLVGQEPMLFVGTVAENIAYGKVEGCTQQEIEEAATKANAHSFiVENLPQQYQTQVGIRGGKLSGGQKQRVAIARALVRKPAVLLLDEATSALDNESEKIVQAALDDMMakQKKTTITIAHRLSTIRGADLIAVINRGKVVERGNHTSLLQQRGIYFDLVQS 1506
                  3444455554.3478*************9857788899****************************************************************************************************84699*************************************************************955679******************************************998765 PP

>> TIGR01846  type_I_sec_HlyB: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.0     0.069       4.2     269     388 ..     233     346 ..     190     354 .. 0.73
   2 !  255.4   0.5   3.7e-78   2.2e-76     428     693 ..     493     766 ..     477     767 .. 0.90
   3 !   17.6   0.2   3.4e-06   0.00021     187     386 ..     929    1137 ..     918    1144 .. 0.77
   4 !  256.3   0.5     2e-78   1.2e-76     447     693 ..    1257    1508 ..    1231    1509 .] 0.92

  Alignments for each domain:
  == domain 1    score: 3.3 bits;  conditional E-value: 0.069
   TIGR01846 269 flavmffyspkltlvvlvslviylllsvivspilrkrvedkfeksaeaqsflvesvtgietikasavepqfkrrWerqlaayvaasfkvtklgnlasqaieliqkltaalllwfGaklvl 388
                  l++ f+y p + +vv+ ++++ +     +  + ++  ++  +  aea     e++++++ti + ++e++  + +e  l +   a+  +  lg   + a+++     a ++l+fGa l+ 
  MMETSP1137-20121227|4380_1 233 CLGIAFYYNPWVSFVVVATFPVVMGAAGLMNHVQQNSTKNIQAAYAEAGGRANEALSSMRTIACFSLEERTAKLYESGLKRAEVAAVWAAVLG---GFALSV---FMASMNLMFGAGLLF 346
                 58899**************9997766655555555555555666688888899********************99999876554444444443...333332...334455555555554 PP

  == domain 2    score: 255.4 bits;  conditional E-value: 3.7e-78
   TIGR01846 428 lerlGdildsPt.eassagkaalpelkGaiefenirfryked.spevlsnlsldikaGeviGivGpsGsGkstltkllqrlyvPekGrvlvdgvdlaladPawlrrqvgvvlqenvlfsrsirdnialak.PaiseekviaaaklaGahdfis.elkqGyetevgekGaalsGGqrqrialaralvanPrilildeatsaldyeseavimrnlreic..kgrtviiiahrlstvraadrilvlekGkivesGkheellak..eglyaklyqqqs 693
                 ++ l +i   Pt +a s+   +l++++G+ie++++ f y      +v +  sl+++aG+v+ + G+sGsGkst+  l+ r+y P++G v  dgvd+  ++ +wlr+q+g+v qe vlf +++++nia +k  ++ +e++ aaa++a ah fi+ +l++Gy t+vg+ G++lsGGq+qr+a+ara v  P + +ldeatsald  se+v+++ l+++   + rt i+iahrlst+r+ad+i v++kG++vesG++++lla   +g++ +l q+q 
  MMETSP1137-20121227|4380_1 493 VKVLRTIERMPTiDAFSTEGNTLTQVRGEIEVKDVYFAYPSApDVQVCNGYSLHVPAGQVVALCGQSGSGKSTIINLVERFYDPHRGAVHFDGVDVRTLNVSWLRQQIGLVGQEPVLFVGTVAENIAYGKkDGATQEEIEAAAEMANAHGFIKdKLPDGYGTQVGQGGSKLSGGQKQRVAIARAXVRXPAVXLLDEATSALDTASERVVQKALDSLMakRKRTTITIAHRLSTIRNADKIAVVHKGQVVESGTYDKLLAIgqGGRFYELAQKQE 766
                 455555555555234445567899***************65415678999******************************************************************************97257999****************8469**********************************************************98633679***********************************9854489*****99996 PP

  == domain 3    score: 17.6 bits;  conditional E-value: 3.4e-06
   TIGR01846  187 avavaevalsllrtylfahltsridvelgaklyrhllalPlsyf..esrrvGdtvarvreleqirefltgsaltvvldllfvvvf.lavmffysp.kltlvvlvslviyll.lsvivspil..rkrvedk.f.eksaeaqsflvesvtgietikasavepqfkrrWerqlaayvaasfkvtklgnlasqaieliqkltaalllwfGakl 386 
                  ++ v+ va+ +  t  ++   +++  +l +   r +l   ++yf  es   G+  + + e  ++ + + g+ + ++l  +f++v  l+ +f++   +l lv+l s++i +l +sv +  +l   k+ ++k   +++ +a sf+ e v gi+t+ + + e+ f + + +++ +   ++     +g la+  ++ +  +++ +++++G +l
  MMETSP1137-20121227|4380_1  929 IIGVVAVAVITAETACLGIPGQHLTTNLRSLCMRTFLKQDMGYFdaESNSAGELTSFLEEKVTLVQAMNGEKIGTLLRTIFTLVSgLGLVFYFGYwQLSLVMLASVPIIALaMSVQMMVQLgaTKQGAEKsGaKEEKSAGSFIGEVVIGIRTVSSFSAEQTFFNMYCEKVDEMSGKGKVNALVGGLAAGLAKGVPLMVFGVVFYYGGTL 1137
                  555666666666777788888889999999999***********4446789*******************************99648888887643899999999988765244444433311333333313134556789************************99999888888877777777777777777788888888888765 PP

  == domain 4    score: 256.3 bits;  conditional E-value: 2e-78
   TIGR01846  447 aalpelkGaiefenirfrykedsp.evlsnlsldikaGeviGivGpsGsGkstltkllqrlyvPekGrvlvdgvdlaladPawlrrqvgvvlqenvlfsrsirdnialakP.aiseekviaaaklaGahdfis.elkqGyetevgekGaalsGGqrqrialaralvanPrilildeatsaldyeseavimrnlreic..kgrtviiiahrlstvraadrilvlekGkivesGkheellakeglyaklyqqqs 693 
                  a  ++ +G+i+++++ f y      ++ +  +l++++G+v+ + GpsGsGkst+  l+ r+y P++G v++dgvd+  ++ +wlr+q+g+v qe +lf +++++nia +k  +  ++++ +aa+ a ah fi+ +l+q y+t+vg +G++lsGGq+qr+a+aralv +P +l+ldeatsald ese++++  l+++   + +t i+iahrlst+r ad i v+++Gk+ve+G+h  ll+++g y +l q q+
  MMETSP1137-20121227|4380_1 1257 ARPASCAGDIQLQDVVFAYPTRLDyTICNGYTLHVPSGQVVALCGPSGSGKSTIIALVERFYDPQEGSVMLDGVDVRTLNVSWLRQQIGLVGQEPMLFVGTVAENIAYGKVeGCTQQEIEEAATKANAHSFIVeNLPQQYQTQVGIRGGKLSGGQKQRVAIARALVRKPAVLLLDEATSALDNESEKIVQAALDDMMakQKKTTITIAHRLSTIRGADLIAVINRGKVVERGNHTSLLQQRGIYFDLVQSQA 1508
                  4455689************877551677889******************************************************************************962688999*************96269*********************************************************998633579**********************************************9996 PP

>> TIGR03797  NHLM_micro_ABC2: NHLM bacteriocin system ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.9   0.1    0.0017       0.1     183     357 ..     153     324 ..      81     362 .. 0.81
   2 !  240.7   1.6   1.2e-73   7.1e-72     416     685 ..     490     765 ..     458     766 .. 0.87
   3 !   20.0   0.1   7.4e-07   4.5e-05     208     385 ..     953    1139 ..     855    1166 .. 0.77
   4 !  240.5   1.0   1.3e-73     8e-72     392     685 ..    1208    1507 ..    1194    1508 .. 0.87

  Alignments for each domain:
  == domain 1    score: 8.9 bits;  conditional E-value: 0.0017
   TIGR03797 183 laaalgallfqlaqslavlRletavdaslqaavwdrLLrlpasfFreysagdLasra.mgvsqirrllsgatlkallssifallnlvlllvyslklalvavllalvaiavtlvlgllqvrkerkllelegklsgltvqlingisKlrvagaeerafaawakefseqrklelkaqri 357
                 +a+ +g+ +++ a ++a +R+++  + +        ++r   s+F + + ++La  +  ++s+i+  l++++++ +  s  +l  l++ ++y+  ++ v v+   v+++   ++  +q + ++++++  ++  g + + ++++  +   + eer+   +    ++++  ++ a+ +
  MMETSP1137-20121227|4380_1 153 VALWFGTGIYMGATDIAKVRMMACYKKEYVK----SIIRQDLSWFDTNNPSELAPGIgAAMSTIEDGLGNKVMQLFENSGTGLGCLGIAFYYNPWVSFVVVATFPVVMGAAGLMNHVQQNSTKNIQAAYAEAGGRANEALSSMRTIACFSLEERTAKLYESGLKRAEVAAVWAAVL 324
                 3445677778888888888888777666554....456888899999999***988736899******************************************************************999999999999999999988888888777777666665555544444 PP

  == domain 2    score: 240.7 bits;  conditional E-value: 1.2e-73
   TIGR03797 416 ievlavvplyerakPileaepEvdeekvdpgkLsGaievdrvtFrYekd.gplvLddvslkiepGefvaivGaSGsGKStllrlLLgFekPesGsvlyDGqdlekldvqavRrqlGvVLQngrllsgsileniaggas..ltldeaweaarmagleeDik.amPmglhTvisegggtlSGGQrQRlliAralvrkPrillfDEATSALDNrtQaiVsesleklkvtR....iviAHRLSTirnadrilvleeGrvveqGsyeeLla..keGlfaelarRQ 685
                  ++++v+ + er+  i +  +E      +  +++G+iev+ v F+Y +    +v +  sl++ +G+ va+ G+SGsGKSt++ l+  F  P+ G+v++DG d+++l+v+ +R+q+G V Q+  l+ g++ enia g++   t++e  +aa+ma     ik ++P g  T + +gg++lSGGQ+QR+ iAra vr P + l+DEATSALD  + ++V ++l+ l + R    i iAHRLSTirnad+i v+++G+vve+G+y++Lla  ++G f+ela++Q
  MMETSP1137-20121227|4380_1 490 QAAVKVLRTIERMPTIDAFSTE----GNTLTQVRGEIEVKDVYFAYPSApDVQVCNGYSLHVPAGQVVALCGQSGSGKSTIINLVERFYDPHRGAVHFDGVDVRTLNVSWLRQQIGLVGQEPVLFVGTVAENIAYGKKdgATQEEIEAAAEMANAHGFIKdKLPDGYGTQVGQGGSKLSGGQKQRVAIARAXVRXPAVXLLDEATSALDTASERVVQKALDSLMAKRkrttITIAHRLSTIRNADKIAVVHKGQVVESGTYDKLLAigQGGRFYELAQKQ 765
                 4455555555554333333333....33345789************654156899******************************************************************************98887789***************9997369*********************************************************99976444444*********************************997789********99 PP

  == domain 3    score: 20.0 bits;  conditional E-value: 7.4e-07
   TIGR03797  208 daslqaavwdrLLrlpasfFr..eysagdLasramgvsqirrllsgatlkallssifalln.lvlllvys.lklalvavllalvaiavtlvlgllqvrkerklleleg.....klsgltvqlingisKlrvagaeerafaawakefseqrklelkaqriedlltvlnavlpvltsavlfalaislla 385 
                   ++l++  +  +L+  + +F   + sag+L+s  +   ++ +++ g  + +ll +if+l++ l+l++++  ++l+lv ++ + ++++ + v  ++q+  +++  e +g     +  +++ +++ gi  +   +ae+ +f ++ ++  e +      + +  l++ l + +p+++  v+f+   +ll+
  MMETSP1137-20121227|4380_1  953 TTNLRSLCMRTFLKQDMGYFDaeSNSAGELTSFLEEKVTLVQAMNGEKIGTLLRTIFTLVSgLGLVFYFGyWQLSLVMLASVPIIALAMSVQMMVQLGATKQGAEKSGakeekSAGSFIGEVVIGIRTVSSFSAEQTFFNMYCEKVDEMSGKGKVNALVGGLAAGLAKGVPLMVFGVVFYYGGTLLN 1139
                  455566666778888899996225789********999********************98659999999658999888777777766666666666666666555554111115667889999**********************999999888889999999999999999999999998777664 PP

  == domain 4    score: 240.5 bits;  conditional E-value: 1.3e-73
   TIGR03797  392 gsflafntafgsflkavtslaetlievlavvplyerakPileaepEvdeekvdpgkLsGaievdrvtFrYekd.gplvLddvslkiepGefvaivGaSGsGKStllrlLLgFekPesGsvlyDGqdlekldvqavRrqlGvVLQngrllsgsileniaggas..ltldeaweaarmagleeDi.kamPmglhTvisegggtlSGGQrQRlliAralvrkPrillfDEATSALDNrtQaiVseslekl....kvtRiviAHRLSTirnadrilvleeGrvveqGsyeeLlakeGlfaelarRQ 685 
                   s++ f +a+g+ +++ t+   +  +  a++ l++r++   +  p  ++e ++p++  G+i+++ v F+Y +    ++ +  +l++  G+ va+ G+SGsGKSt++ l+  F  P++Gsv+ DG d+++l+v+ +R+q+G V Q+  l+ g++ enia g++   t++e  eaa +a     i +++P +  T +   gg+lSGGQ+QR+ iAralvrkP +ll+DEATSALDN++ +iV ++l+ +    k t i iAHRLSTir ad i v++ G+vve+G++ +Ll+++G++ +l++ Q
  MMETSP1137-20121227|4380_1 1208 PSLVVFFMAMGIGMASSTAT-DASKAKEALLALFDRLERQSAIDP-SSTEGARPASCAGDIQLQDVVFAYPTRlDYTICNGYTLHVPSGQVVALCGPSGSGKSTIIALVERFYDPQEGSVMLDGVDVRTLNVSWLRQQIGLVGQEPMLFVGTVAENIAYGKVegCTQQEIEEAATKANAHSFIvENLPQQYQTQVGIRGGKLSGGQKQRVAIARALVRKPAVLLLDEATSALDNESEKIVQAALDDMmakqKKTTITIAHRLSTIRGADLIAVINRGKVVERGNHTSLLQQRGIYFDLVQSQ 1507
                  56777888877766655433.222333344555555555444444.4456789*****************87625678899****************************************************************************98877689**********99988865389**************************************************999999987652222779*********************************************988 PP

>> TIGR03796  NHLM_micro_ABC1: NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.7   0.0   0.00019     0.011     221     354 ..     169     303 ..     137     353 .. 0.84
   2 !  222.6   0.4     3e-68   1.8e-66     466     707 ..     510     760 ..     470     763 .. 0.90
   3 !   11.5   0.1   0.00022     0.013     134     357 ..     854    1093 ..     845    1131 .. 0.64
   4 !  235.3   0.3   4.3e-72   2.6e-70     470     710 .]    1258    1505 ..    1225    1505 .. 0.90

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 0.00019
   TIGR03796 221 leiklavassarflwhilrlPveffaqRaageiasRvqln.dkvaellsgqlattvldlvlvvfyalvmllydlvlaliaialaainvlalqlvsrkrvdanrrlqqdagklagvaiaglqsietlkAsglesdf 354
                  ++++     +++++ i+r   ++f+    +e+a  + ++   + + l++++++   +  + +  + + + y+++++++++a+  + + a  l+++ ++++++++q+ ++ + g a ++l+s+ t+   +le+  
  MMETSP1137-20121227|4380_1 169 AKVRMMACYKKEYVKSIIRQDLSWFDTNNPSELAPGIGAAmSTIEDGLGNKVMQLFENSGTGLGCLGIAFYYNPWVSFVVVATFPVVMGAAGLMNHVQQNSTKNIQAAYAEAGGRANEALSSMRTIACFSLEERT 303
                 56677777788999999******************9988725688899999999999999999999************************************************************998888765 PP

  == domain 2    score: 222.6 bits;  conditional E-value: 3e-68
   TIGR03796 466 aeseekekLsGkvelrnvtfgy.saleapliedfslslkpGqrvAlvGgsGsGkstiaklvaGlyepwsGeilfDgkpreeiprevlanslalvdqdivlfegtvrdnltlwd.etipeedlvrAakDAaihdvil.arpggyeaelaegganlsGGqrqRleiARaLvknPsiLilDEatsaLDaetEkaidenl....rrRgctciivaHRLstiRdcdeiivlerGkvverGtHeella..kegaYar 707
                 +e ++ ++++G++e+++v f+y sa + ++ +++sl++  Gq vAl G+sGsGksti  lv  +y+p +G + fDg++ ++++ + l++ + lv q+ vlf gtv +n++    +  ++e+++ Aa+ A  h  i  ++p+gy +++ +gg+ lsGGq+qR+ iARa v+ P++ +lDEatsaLD++ E+ ++++l     +R  t+i +aHRLstiR++d+i v+ +G+vve Gt+++lla  ++g + +
  MMETSP1137-20121227|4380_1 510 TEGNTLTQVRGEIEVKDVYFAYpSAPDVQVCNGYSLHVPAGQVVALCGQSGSGKSTIINLVERFYDPHRGAVHFDGVDVRTLNVSWLRQQIGLVGQEPVLFVGTVAENIAYGKkDGATQEEIEAAAEMANAHGFIKdKLPDGYGTQVGQGGSKLSGGQKQRVAIARAXVRXPAVXLLDEATSALDTASERVVQKALdslmAKRKRTTITIAHRLSTIRNADKIAVVHKGQVVESGTYDKLLAigQGGRFYE 760
                 334444899*************55568899********************************************************************************97515788999**************83579*************************************************9998765333379**************************************98556666655 PP

  == domain 3    score: 11.5 bits;  conditional E-value: 0.00022
   TIGR03796  134 kggrkpsllrallkrlkgs.egallllvlaglllvlpglvvpafskifvD..eilveeaqe.wlr.plllglllta..llqvvltllqlallrrleiklavassarflwhilrlPveffa..qRaageiasRvqlndkvaellsgqlattvldlvlvvfyalvmlly..dlvlaliaialaainvlalqlvsrkr........vdanrrlqqdagklagvaiaglqsietlkAsglesdffsr 357 
                  k++r +s++ +l++  k + +g   +l+  ++l ++ g + pa+  ifv   ++l e + +   +  +++g +  +  ++ v++ + ++a l    ++l+++  +  ++  l+  + +f+  + +age++s ++    + +++ g+ + t+l ++  ++  l ++ y   ++l+l+++a   i +la+++++  +        +++ ++ ++ ag  +g ++ g   i t+   ++e+ ff+ 
  MMETSP1137-20121227|4380_1  854 KKKRDTSFFGVLKRLNKLQaKGDSRYLIAGAFLSMIDGCINPAIGFIFVKllTVLYEPNPDdIAKgSVIYGCVYIIigVVAVAVITAETACLGIPGQHLTTNLRSLCMRTFLKQDMGYFDaeSNSAGELTSFLEEKVTLVQAMNGEKIGTLLRTIFTLVSGLGLVFYfgYWQLSLVMLASVPIIALAMSVQMMVQlgatkqgaEKSGAKEEKSAGSFIGEVVIG---IRTVSSFSAEQTFFNM 1093
                  455556666665554443314556788888899999************9833567666554133324555554444114455555566777888889999999999*************8224689*************9999999999999888888877766555223455555555444444444333333300000000223333333444444444444...5555555667777765 PP

  == domain 4    score: 235.3 bits;  conditional E-value: 4.3e-72
   TIGR03796  470 ekekLsGkvelrnvtfgy.saleapliedfslslkpGqrvAlvGgsGsGkstiaklvaGlyepwsGeilfDgkpreeiprevlanslalvdqdivlfegtvrdnltlwd.etipeedlvrAakDAaihdvil.arpggyeaelaegganlsGGqrqRleiARaLvknPsiLilDEatsaLDaetEkaid....enlrrRgctciivaHRLstiRdcdeiivlerGkvverGtHeellakegaYarLir 710 
                  + +   G ++l++v f+y ++l+  + ++++l++ +Gq vAl G+sGsGksti  lv  +y+p +G++++Dg++ ++++ + l++ + lv q+ +lf gtv +n++    e  +++++++Aa  A  h  i+ ++p++y++++   g  lsGGq+qR+ iARaLv++P++L+lDEatsaLD e Ek+++    + + +   t+i +aHRLstiR +d i v++rGkvverG+H +ll++ g Y +L++
  MMETSP1137-20121227|4380_1 1258 RPASCAGDIQLQDVVFAYpTRLDYTICNGYTLHVPSGQVVALCGPSGSGKSTIIALVERFYDPQEGSVMLDGVDVRTLNVSWLRQQIGLVGQEPMLFVGTVAENIAYGKvEGCTQQEIEEAATKANAHSFIVeNLPQQYQTQVGIRGGKLSGGQKQRVAIARALVRKPAVLLLDEATSALDNESEKIVQaaldDMMAKQKKTTITIAHRLSTIRGADLIAVINRGKVVERGNHTSLLQQRGIYFDLVQ 1505
                  227889************66899***********************************************************************************87636899**************9876268***************************************************986111155689999*******************************************9986 PP

>> TIGR03375  type_I_sec_LssB: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.0      0.12       7.4     281     359 ..     236     314 ..     233     354 .. 0.84
   2 !  224.3   0.3   9.4e-69   5.7e-67     434     690 ..     490     751 ..     475     757 .. 0.91
   3 ?    5.3   0.3     0.017         1     220     361 ..     952    1103 ..     925    1130 .. 0.69
   4 !  225.8   0.3   3.3e-69     2e-67     420     691 ..    1219    1496 ..    1214    1498 .. 0.93

  Alignments for each domain:
  == domain 1    score: 2.5 bits;  conditional E-value: 0.12
   TIGR03375 281 vialiggplvlvplvavplvllvglllqkplsklaeeslresaqknallveslegletikalnaesrlqkkWeqvvaal 359
                 + ++  +++ +v+++++p+v+ ++ l+ +  ++++++ +++ a+  +   e+l+ + ti   + e+r+ k +e+ ++  
  MMETSP1137-20121227|4380_1 236 IAFYYNPWVSFVVVATFPVVMGAAGLMNHVQQNSTKNIQAAYAEAGGRANEALSSMRTIACFSLEERTAKLYESGLKRA 314
                 5566678999****************999999999999999999999******************99999999876654 PP

  == domain 2    score: 224.3 bits;  conditional E-value: 9.4e-69
   TIGR03375 434 ktalesldelmklpvereeekrllsreklkGeielknvsfkYpeeek.aaLknvslkikpGekvaiiGriGsGKstllklllglyepteGsvlldgvdirqidpadlrrnigyvpqdvtLfyGtlrdNialgap.aaedeellraaelaGvtefvkkh.pkGldlqigerGesLSgGQrqavalaRallkdppillLDEPtsalDnsseekllerLkella..dkTlvlvtHrtslLelvdriivldkGrivadGpkdevle 690
                 ++a++ l ++ ++p+    +++  + ++++Geie+k+v f+Yp + + ++ +  sl++ +G+ va+ G+ GsGKst+ +l+ ++y+p++G+v +dgvd+r+++++ lr++ig+v q+++Lf Gt+ +Nia+g++  a++ee+ +aae+a ++ f+k++ p+G+ +q+g++G++LSgGQ+q va+aRa ++ p++ lLDE tsalD++se+ + ++L +l+a  ++T + ++Hr s ++ +d+i v+ kG++v  G+ d++l+
  MMETSP1137-20121227|4380_1 490 QAAVKVLRTIERMPTIDAFSTEGNTLTQVRGEIEVKDVYFAYPSAPDvQVCNGYSLHVPAGQVVALCGQSGSGKSTIINLVERFYDPHRGAVHFDGVDVRTLNVSWLRQQIGLVGQEPVLFVGTVAENIAYGKKdGATQEEIEAAAEMANAHGFIKDKlPDGYGTQVGQGGSKLSGGQKQRVAIARAXVRXPAVXLLDEATSALDTASERVVQKALDSLMAkrKRTTITIAHRLSTIRNADKIAVVHKGQVVESGTYDKLLA 751
                 4455555555566665566666677889**************998661667889******************************************************************************986799*****************8644************************************************************997899*******************************999886 PP

  == domain 3    score: 5.3 bits;  conditional E-value: 0.017
   TIGR03375  220 vdlilsaklfervlglrl...earpasvGsfasqlrefesvrdfltsatltalvDLpfvllf.llvialiggp.lvlvplvavplvllvglllqkpls..kla..ees..lresaqknallveslegletikalnaesrlqkkWeqvvaalak 361 
                  + ++l +  ++  l+ ++   +a+++s G ++s l e  ++ + +  + + +l    f+l+  l ++++ g + l lv+l+ vp++ ++++ +q +++  ++   +e+  ++e ++  +++ e + g+ t+   +ae+++ + + + v +++ 
  MMETSP1137-20121227|4380_1  952 LTTNLRSLCMRTFLKQDMgyfDAESNSAGELTSFLEEKVTLVQAMNGEKIGTLLRTIFTLVSgLGLVFYFGYWqLSLVMLASVPII-ALAMSVQMMVQlgATKqgAEKsgAKEEKSAGSFIGEVVIGIRTVSSFSAEQTFFNMYCEKVDEMSG 1103
                  55555555555555555433367889999999999999999999999999999999999986588899999764777766666654.34444444333103220022200333333446899*****************99998888877765 PP

  == domain 4    score: 225.8 bits;  conditional E-value: 3.3e-69
   TIGR03375  420 laqlaglltryqqaktalesl.delmklpvereeekrllsreklkGeielknvsfkYpeeekaaL.knvslkikpGekvaiiGriGsGKstllklllglyepteGsvlldgvdirqidpadlrrnigyvpqdvtLfyGtlrdNialgap.aaedeellraaelaGvtefv.kkhpkGldlqigerGesLSgGQrqavalaRallkdppillLDEPtsalDnsseekllerLkella..dkTlvlvtHrtslLelvdriivldkGrivadGpkdevlea 691 
                  +++ ++ +t  ++ak+al +l d+l ++ +  +++++ ++  ++ G+i+l++v f+Yp + + ++ +  +l++ +G+ va+ G  GsGKst+  l+ ++y+p+eGsv+ldgvd+r+++++ lr++ig+v q+++Lf Gt+ +Nia+g+   ++++e+ +aa++a +++f+ ++ p+ +++q+g rG +LSgGQ+q va+aRal+++p++llLDE tsalDn+se+ +  +L +++a  +kT + ++Hr s ++ +d i v+++G++v  G++  +l++
  MMETSP1137-20121227|4380_1 1219 IGMASSTATDASKAKEALLALfDRLERQSAIDPSSTEGARPASCAGDIQLQDVVFAYPTRLDYTIcNGYTLHVPSGQVVALCGPSGSGKSTIIALVERFYDPQEGSVMLDGVDVRTLNVSWLRQQIGLVGQEPMLFVGTVAENIAYGKVeGCTQQEIEEAATKANAHSFIvENLPQQYQTQVGIRGGKLSGGQKQRVAIARALVRKPAVLLLDEATSALDNESEKIVQAALDDMMAkqKKTTITIAHRLSTIRGADLIAVINRGKVVERGNHTSLLQQ 1496
                  67778888889999999887647888777778999999999*****************999988735689*****************************************************************************97579****************963788***********************************************************9987799*******************************9999987 PP

>> TIGR01192  chvA: glucan exporter ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  222.5   0.6   3.8e-68   2.3e-66     323     570 ..     510     765 ..     474     777 .. 0.90
   2 !  210.9   0.2   1.2e-64   7.4e-63     327     568 ..    1258    1505 ..    1219    1508 .. 0.88

  Alignments for each domain:
  == domain 1    score: 222.5 bits;  conditional E-value: 3.8e-68
   TIGR01192 323 adarelknvkgavefrdisfefans..sqgvrdvsfeakagqtvaivgptgagkttlinllqrvydpksgqilidgvdiatvtreslrksiatvfqdagllnrsirenirlgre.datdeevveaakaaaasdfiekrl.kgydtlvgergnrlsggerqrlaiarailknapilvldeatsaldvetearvkdaidal..rknrttfiiahrlstvreadlvlfldqgrliekgsfdel..iqkdgrfakllras 570
                 ++ + l++v+g++e +d+ f ++ +   q     s+++ agq va+ g +g+gk+t+inl++r ydp+ g +  dgvd+ t++   lr+ i  v q+  l+  ++ eni  g++ +at+ee+ +aa+ a a+ fi+++l +gy t+vg+ g++lsgg++qr+aiara ++   + +ldeatsald  +e  v++a+d+l  +++rtt+ iahrlst+r+ad +  + +g+++e g++d+l  i ++grf++l ++ 
  MMETSP1137-20121227|4380_1 510 TEGNTLTQVRGEIEVKDVYFAYPSApdVQVCNGYSLHVPAGQVVALCGQSGSGKSTIINLVERFYDPHRGAVHFDGVDVRTLNVSWLRQQIGLVGQEPVLFVGTVAENIAYGKKdGATQEEIEAAAEMANAHGFIKDKLpDGYGTQVGQGGSKLSGGQKQRVAIARAXVRXPAVXLLDEATSALDTASERVVQKALDSLmaKRKRTTITIAHRLSTIRNADKIAVVHKGQVVESGTYDKLlaIGQGGRFYELAQKQ 765
                 5667899**************9876325788889******************************************************************************8626999******************98579*******************************************************98445789**********************************9445689*****98765 PP

  == domain 2    score: 210.9 bits;  conditional E-value: 1.2e-64
   TIGR01192  327 elknvkgavefrdisfefanssqg.v.rdvsfeakagqtvaivgptgagkttlinllqrvydpksgqilidgvdiatvtreslrksiatvfqdagllnrsirenirlgr.edatdeevveaakaaaasdfiekrl.kgydtlvgergnrlsggerqrlaiarailknapilvldeatsaldvetearvkdaidal..rknrttfiiahrlstvreadlvlfldqgrliekgsfdeliqkdgrfakllr 568 
                     +  g+++++d+ f ++   +  +    ++++ +gq va+ gp+g+gk+t+i l++r ydp++g +++dgvd+ t++   lr+ i  v q+  l+  ++ eni  g+ e+ t++e+ eaa  a a+ fi ++l ++y+t+vg rg +lsgg++qr+aiara+++   +l+ldeatsald e+e  v++a+d +  ++++tt+ iahrlst+r adl+  +++g+++e+g+   l q+ g +  l++
  MMETSP1137-20121227|4380_1 1258 RPASCAGDIQLQDVVFAYPTRLDYtIcNGYTLHVPSGQVVALCGPSGSGKSTIIALVERFYDPQEGSVMLDGVDVRTLNVSWLRQQIGLVGQEPMLFVGTVAENIAYGKvEGCTQQEIEEAATKANAHSFIVENLpQQYQTQVGIRGGKLSGGQKQRVAIARALVRKPAVLLLDEATSALDNESEKIVQAALDDMmaKQKKTTITIAHRLSTIRGADLIAVINRGKVVERGNHTSLLQQRGIYFDLVQ 1505
                  445678************98765413145788999*************************************************************************956789****************98876479******************************************************9653367899***************************************9999987 PP

>> TIGR02857  CydD: thiol reductant ABC exporter, CydD subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   0.2     0.016      0.96      18     237 ..     117     332 ..     102     353 .. 0.70
   2 !  205.9   0.4   4.7e-63   2.8e-61     290     528 ..     488     734 ..     485     735 .. 0.89
   3 ?    5.5   0.1     0.025       1.5      69     204 ..     946    1089 ..     878    1102 .. 0.69
   4 !  203.1   0.5   3.2e-62   1.9e-60     289     527 ..    1228    1477 ..    1219    1479 .. 0.88

  Alignments for each domain:
  == domain 1    score: 6.1 bits;  conditional E-value: 0.016
   TIGR02857  18 lliaqAallarvvssliaagealaelltalaalalvlllRallawlkeaaaaraaaevksqlrerllekvaalGpavlqkkksgelatlllegvdalddYfarylpqlvlavivplvilaavltadwisalillltlPlipiFmiLiGsaaqaaarkqlaalsrLsghfldlvrglptLklfgrakaeaaaikriseeyrerTmevLriAfLSslvLell 237
                 +l+ +A  + ++ +     + +++el+ ++++l++v ++    + +   a + a +++ +  +++ ++ + ++  ++  +++ +ela  +  +++ ++d +   + ql+    + l  l + +  +     +++ t+P++     L+ +  q+ +++ +aa ++ +g   + ++ + t++ f  ++++a+ + ++   ++++ ++    A L +++L ++
  MMETSP1137-20121227|4380_1 117 VLVLFAGSIESAGQAS-NGAFDQDELTRQAVLLVVVGVALWFGTGIYMGATDIAKVRMMACYKKEYVKSIIRQDLSWFDTNNPSELAPGIGAAMSTIEDGLGNKVMQLFENSGTGLGCLGIAFYYNPWVSFVVVATFPVVMGAAGLMNHVQQNSTKNIQAAYAEAGGRANEALSSMRTIACFSLEERTAK-LYES--GLKRAEVAAVWAAVLGGFALSVF 332
                 5555555554443333.4444555666665555555554444444444455556667777777888888888888888888888888888888888888888888888888887777776677777666788999************************************************9987764.4443..45556666666777777777655 PP

  == domain 2    score: 205.9 bits;  conditional E-value: 4.7e-63
   TIGR02857 290 gvaaaealvevldaeeqpeaekapltaaass..slelenvsvayegrk..palkevsltvepgelvalvGaSGaGKstllklllgfvepteGailvngaelaeldadswrkqiawvpQkPllfegtvaenirlarkd.aseaevkealeragldelvk.alpqgleteiGergagLSgGqrqRlaLArallrdapllllDEPtahLDaeteaevlealrela..egrtvllvaHrlalaeladkivv 528
                 +++aa ++ +++++ + + a +++ ++  +   ++e+++v +ay+ +   ++ ++ sl+v++g++val+G+SG+GKst+++l+ +f +p++Ga++ +g++++ l+ + +r+qi+ v+Q+P+lf gtvaeni+ ++kd a+++e+++a+e a+++ ++k +lp+g+ t++G++g++LSgGq+qR+a+Ara +r   + llDE t++LD ++e  v++al++l+  ++rt++ +aHrl+++++adki v
  MMETSP1137-20121227|4380_1 488 ARQAAVKVLRTIERMPTIDAFSTEGNTLTQVrgEIEVKDVYFAYPSAPdvQVCNGYSLHVPAGQVVALCGQSGSGKSTIINLVERFYDPHRGAVHFDGVDVRTLNVSWLRQQIGLVGQEPVLFVGTVAENIAYGKKDgATQEEIEAAAEMANAHGFIKdKLPDGYGTQVGQGGSKLSGGQKQRVAIARAXVRXPAVXLLDEATSALDTASERVVQKALDSLMakRKRTTITIAHRLSTIRNADKIAV 734
                 566666777777744444444444333333346***********877668899******************************************************99***********************99876478899*************97369************************************************************977889*****************976 PP

  == domain 3    score: 5.5 bits;  conditional E-value: 0.025
   TIGR02857   69 araaaevksqlrerllekvaal..GpavlqkkksgelatlllegvdalddYfarylpqlvlavivplvilaavl.tadwisalillltlPlipi.....FmiLiGsaaqaaarkqlaalsrLsghfldlvrglptLklfgraka 204 
                     + + + +lr+  +++ +++  G  +++++++gel++ l e+v  +++     + +l+ ++++ +  l  v+ +  w+  l++l ++P+i +      m+ +G   q a++   ++ +  ++++ ++v g+ t+  f ++++
  MMETSP1137-20121227|4380_1  946 GIPGQHLTTNLRSLCMRTFLKQdmGYFDAESNSAGELTSFLEEKVTLVQAMNGEKIGTLLRTIFTLVSGLGLVFyFGYWQLSLVMLASVPIIALamsvqMMVQLGATKQGAEKSGAKEEKSAGSFIGEVVIGIRTVSSFSAEQT 1089
                  44566677777777777776653366677889999999999999999998888877777766665555454554156799************99333322333455445555555555555566666999*******9999875 PP

  == domain 4    score: 203.1 bits;  conditional E-value: 3.2e-62
   TIGR02857  289 egvaaaealvevld...aeeqpeaekapltaaass...slelenvsvayegrk..palkevsltvepgelvalvGaSGaGKstllklllgfvepteGailvngaelaeldadswrkqiawvpQkPllfegtvaenirlarkd.aseaevkealeragldel.vkalpqgleteiGergagLSgGqrqRlaLArallrdapllllDEPtahLDaeteaevlealrela..egrtvllvaHrlalaeladkiv 527 
                  ++ +a eal +++d   +++++ +++++ ++ a s    ++l++v +ay+ r    + ++  l+v++g++val+G+SG+GKst+++l+ +f +p+eG++ ++g++++ l+ + +r+qi+ v+Q+P+lf gtvaeni+ ++ +  +++e++ea+++a+++++ v++lpq ++t++G rg +LSgGq+qR+a+Aral+r+  +lllDE t++LD+e+e+ v++al++++  +++t++ +aHrl++++ ad i 
  MMETSP1137-20121227|4380_1 1228 DASKAKEALLALFDrleRQSAIDPSSTEGARPA-ScagDIQLQDVVFAYPTRLdyTICNGYTLHVPSGQVVALCGPSGSGKSTIIALVERFYDPQEGSVMLDGVDVRTLNVSWLRQQIGLVGQEPMLFVGTVAENIAYGKVEgCTQQEIEEAATKANAHSFiVENLPQQYQTQVGIRGGKLSGGQKQRVAIARALVRKPAVLLLDEATSALDNESEKIVQAALDDMMakQKKTTITIAHRLSTIRGADLIA 1477
                  555566666666663324444444444443333.2578***********9886678999*****************************************************99***********************99976268899************83589************************************************************9988999***************9886 PP

>> TIGR01193  bacteriocin_ABC: ABC-type bacteriocin transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  192.3   0.0   5.5e-59   3.3e-57     463     706 ..     511     762 ..     480     764 .. 0.89
   2 !   19.1   0.1   1.3e-06   8.1e-05     174     366 ..     897    1100 ..     845    1145 .. 0.66
   3 !  192.8   0.0   3.8e-59   2.3e-57     468     707 ..    1260    1505 ..    1232    1506 .. 0.93

  Alignments for each domain:
  == domain 1    score: 192.3 bits;  conditional E-value: 5.5e-59
   TIGR01193 463 kltelenlngdievndvsysyGygs..evledislkikknekitlvGlsGsGkstlakllvkffqaesGeillngkslkdidkhelrqlinylPqePfifsGsilenlllgakenvsqeeikkaveiaeikddie.klplGyqtelseeassisgGqkqrlalarallsdskvlildestsnldlltek...kivenllklkdktiifvahrlsvakksdkiivldeGkiieqGshkellk..enGfyasli 706
                 + ++l++++g+iev+dv + y  +   +v +  sl++ + ++++l G sGsGkst++ l+ +f++++ G ++++g++++ ++ + lrq i  + qeP++f G++ en+  g k++++qeei++a e+a+ +  i+ klp Gy t++ + +s++sgGqkqr+a+ara +    v +lde+ts ld+  e+   k ++ l+  +++t i +ahrls  +++dki v+++G+++e+G++++ll+  + G +++l 
  MMETSP1137-20121227|4380_1 511 EGNTLTQVRGEIEVKDVYFAYPSAPdvQVCNGYSLHVPAGQVVALCGQSGSGKSTIINLVERFYDPHRGAVHFDGVDVRTLNVSWLRQQIGLVGQEPVLFVGTVAENIAYGKKDGATQEEIEAAAEMANAHGFIKdKLPDGYGTQVGQGGSKLSGGQKQRVAIARAXVRXPAVXLLDEATSALDTASERvvqKALDSLMAKRKRTTITIAHRLSTIRNADKIAVVHKGQVVESGTYDKLLAigQGGRFYELA 762
                 33678999*************98751267899****************************************************************************************************99648*************************************************996333779999999**************************************8633677777775 PP

  == domain 2    score: 19.1 bits;  conditional E-value: 1.3e-06
   TIGR01193  174 agsyylqkiidvyiPnklkntlg.ii.slglilayilqqvlsyikafllivlgqrlsidiilsyikhlfelPmsffst..rrvGeivsrftdaskiidalastilslfldlsilvi..vglvlvlqniklfllslvaiPvyaviiilfkk.tf....eklnkdameanavlnssiiedlnGietiksltseeerykkidsefad 366 
                  +g  +++ +   y Pn      g +i     i++ ++   +  +++  l + gq+l++++    ++  ++  m +f +    +Ge++s + +  ++++a+    +  +l   + ++  +glv+ +   +l l++l ++P+ a+ + + +  ++    +  +k   + +    s i e + Gi t+ s+++e++ ++   ++  +
  MMETSP1137-20121227|4380_1  897 IGFIFVKLLTVLYEPNPDDIAKGsVIyGCVYIIIGVVAVAVITAETACLGIPGQHLTTNLRSLCMRTFLKQDMGYFDAesNSAGELTSFLEEKVTLVQAMNGEKIGTLLRTIFTLVsgLGLVFYFGYWQLSLVMLASVPIIALAMSVQMMvQLgatkQGAEKSGAKEEKSAGSFIGEVVIGIRTVSSFSAEQTFFNMYCEKVDE 1100
                  3455666666667776543333202212222333333333344677889999*********9**************8622579*****************9998887776555444126777778899************987665433302211002233333444455667788999*************999876665555 PP

  == domain 3    score: 192.8 bits;  conditional E-value: 3.8e-59
   TIGR01193  468 enlngdievndvsysyG..ygsevledislkikknekitlvGlsGsGkstlakllvkffqaesGeillngkslkdidkhelrqlinylPqePfifsGsilenlllgakenvsqeeikkaveiaeikddi.eklplGyqtelseeassisgGqkqrlalarallsdskvlildestsnldlltekki...venllklkdktiifvahrlsvakksdkiivldeGkiieqGshkellkenGfyaslih 707 
                   +  gdi+++dv + y   +   + +  +l++ + ++++l G sGsGkst++ l+ +f+++++G ++l+g++++ ++ + lrq i  + qeP++f G++ en+  g  e+ +q+ei++a   a+ ++ i e+lp+ yqt++   + ++sgGqkqr+a+aral+ +  vl+lde+ts ld   ek +   +++++  ++kt i +ahrls  + +d i v+++Gk++e G+h++ll+++G y +l++
  MMETSP1137-20121227|4380_1 1260 ASCAGDIQLQDVVFAYPtrLDYTICNGYTLHVPSGQVVALCGPSGSGKSTIIALVERFYDPQEGSVMLDGVDVRTLNVSWLRQQIGLVGQEPMLFVGTVAENIAYGKVEGCTQQEIEEAATKANAHSFIvENLPQQYQTQVGIRGGKLSGGQKQRVAIARALVRKPAVLLLDEATSALDNESEKIVqaaLDDMMAKQKKTTITIAHRLSTIRGADLIAVINRGKVVERGNHTSLLQQRGIYFDLVQ 1505
                  45689***********722567899************************************************************************************************9999886549*************************************************9997543336889999*********************************************99975 PP

>> TIGR01842  type_I_sec_PrtD: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.0   0.1    0.0016     0.096     133     246 ..     234     343 ..     223     359 .. 0.80
   2 !  195.9   1.2   3.7e-60   2.2e-58     285     541 ..     486     750 ..     457     752 .. 0.88
   3 !  183.5   0.4   2.2e-56   1.3e-54     312     543 ..    1261    1496 ..    1229    1497 .. 0.91

  Alignments for each domain:
  == domain 1    score: 9.0 bits;  conditional E-value: 0.0016
   TIGR01842 133 llvvfllhpylGllalvgavvlvalallneaatkkklkeateasikanklldsalrnaeviealgmlkeltkrWeklkskalsaqsaasdragalsalskvlRivlqslvlglG 246
                 l + f  +p++ ++++++  v+++ a l ++++++++k+ + a  +a   +++al     i  +++ ++  k    l+++ l+  ++a+  a++l++++ ++ ++   l+ g G
  MMETSP1137-20121227|4380_1 234 LGIAFYYNPWVSFVVVATFPVVMGAAGLMNHVQQNSTKNIQAAYAEAGGRANEALSSMRTIACFSLEERTAK----LYESGLKRAEVAAVWAAVLGGFALSVFMASMNLMFGAG 343
                 6799********************999999999999999999999999999999988888888777666555....55666677777777777777777766666666666655 PP

  == domain 2    score: 195.9 bits;  conditional E-value: 3.7e-60
   TIGR01842 285 saarkaykrlkelleelp....areealklPepegelevenvslvppeekk.ktlkgisfalkaGealaiiGpsgsGkssLarllvGvwlpasGsvrlDgadlkqwdretlGksiGYlPqdveLfeGtvaeniaRfe.enadaekvieaaklagvhelil.rlpkGYdteigegGaaLsgGqrqRiaLaRalygdPklvvLDePnanLDeeGeqalakalkelk.arkitvvvithrpsllelvdkilvlkdGalkafGereevl 541
                 ++ar+a  ++ + +e++p    +++e  +l +++ge+ev++v+++ p++   ++ +g s+ + aG+++a+ G+sgsGks++  l+   + p++G v++Dg+d++  +   l ++iG + q+  Lf Gtvaenia  + + a++e++ +aa++a++h +i  +lp+GY t++g+gG++LsgGq+qR+a+aRa  + P++ +LDe  + LD++ e  + kal +l  +rk+t+++i+hr s ++ +dki+v+++G++ + G+ +++l
  MMETSP1137-20121227|4380_1 486 VKARQAAVKVLRTIERMPtidaFSTEGNTLTQVRGEIEVKDVYFAYPSAPDvQVCNGYSLHVPAGQVVALCGQSGSGKSTIINLVERFYDPHRGAVHFDGVDVRTLNVSWLRQQIGLVGQEPVLFVGTVAENIAYGKkDGATQEEIEAAAEMANAHGFIKdKLPDGYGTQVGQGGSKLSGGQKQRVAIARAXVRXPAVXLLDEATSALDTASERVVQKALDSLMaKRKRTTITIAHRLSTIRNADKIAVVHKGQVVESGTYDKLL 750
                 445555444444444444111145566889**************9887755278899*****************************************************************************86515589999999***********758**********************************************************998626789*******************************99987 PP

  == domain 3    score: 183.5 bits;  conditional E-value: 2.2e-56
   TIGR01842  312 epegelevenvslvppeekk.ktlkgisfalkaGealaiiGpsgsGkssLarllvGvwlpasGsvrlDgadlkqwdretlGksiGYlPqdveLfeGtvaeniaRfe.enadaekvieaaklagvhelil.rlpkGYdteigegGaaLsgGqrqRiaLaRalygdPklvvLDePnanLDeeGeqalakalkelk.arkitvvvithrpsllelvdkilvlkdGalkafGereevlkk 543 
                  +  g +++++v+++ p+    ++ +g ++ + +G+++a+ GpsgsGks++  l+   + p++Gsv lDg+d++  +   l ++iG + q+  Lf Gtvaenia  + e  +++++ eaa+ a++h +i+ +lp+ Y+t++g +G +LsgGq+qR+a+aRal ++P++++LDe  + LD+e e+ + +al ++  ++k t+++i+hr s ++ +d i+v++ G++ + G+++++l++
  MMETSP1137-20121227|4380_1 1261 SCAGDIQLQDVVFAYPTRLDyTICNGYTLHVPSGQVVALCGPSGSGKSTIIALVERFYDPQEGSVMLDGVDVRTLNVSWLRQQIGLVGQEPMLFVGTVAENIAYGKvEGCTQQEIEEAATKANAHSFIVeNLPQQYQTQVGIRGGKLSGGQKQRVAIARALVRKPAVLLLDEATSALDNESEKIVQAALDDMMaKQKKTTITIAHRLSTIRGADLIAVINRGKVVERGNHTSLLQQ 1496
                  56789999999999998876256689****************************************************************************965425599***************88637**********************************************************987516789******************************99998875 PP

>> TIGR02868  CydC: thiol reductant ABC exporter, CydC subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  164.6   0.2   1.2e-50   7.2e-49     272     530 .]     456     723 ..     436     723 .. 0.84
   2 !  160.5   0.1   2.1e-49   1.2e-47     283     530 .]    1212    1467 ..    1198    1467 .. 0.83

  Alignments for each domain:
  == domain 1    score: 164.6 bits;  conditional E-value: 1.2e-50
   TIGR02868 272 alAvlvLlp.LaafealaalpaA...aqqltrvraaaeRieevldakvevaeasapaaeaaasekptlelrdlsvsypgaee..vlkgvsldlepGervavvGasGaGKstLlallaglldplkGevtldgvsvaslsesevrrvvsvlaqdaHlFdttvreNlrlarpda.tdeellaaLervgLadwlra.LpdGldtklgeggarlSGGerqRlalARaLladapvllLDEPtehLDaeteeelledLl..aaeegrtvvlvthrl 530
                 ++A  vLl+ L++    + l      +  + ++r+aa ++  +++  +  ++ s + + ++++ + ++e++d+ ++yp a+   v +g sl++++G+ va+ G+sG+GKst+++l+ ++ dp++G v  dgv+v +l+ s +r+ + ++ q++ lF  tv eN+  +++d+ t+ee++aa e +  +  +++ LpdG+ t++g+gg+ lSGG++qR+a+ARa +    v lLDE t  LD + e+ + ++L    a+++rt++ ++hrl
  MMETSP1137-20121227|4380_1 456 WIASSVLLAlLSVQTGAQQLGLIgqnISPIVKARQAAVKVLRTIERMPTIDAFSTEGN-TLTQVRGEIEVKDVYFAYPSAPDvqVCNGYSLHVPAGQVVALCGQSGSGKSTIINLVERFYDPHRGAVHFDGVDVRTLNVSWLRQQIGLVGQEPVLFVGTVAENIAYGKKDGaTQEEIEAAAEMANAHGFIKDkLPDGYGTQVGQGGSKLSGGQKQRVAIARAXVRXPAVXLLDEATSALDTASERVVQKALDslMAKRKRTTITIAHRL 723
                 5555555541455555555554400055555666666666666666644444444444.44445889************998789***********************************************************************************995499**************99877************************************************99999988886557899999******86 PP

  == domain 2    score: 160.5 bits;  conditional E-value: 2.1e-49
   TIGR02868  283 afealaalpaAaqqltrvraaaeRieevldak...vevaeasapaaeaaasekptlelrdlsvsypgaee..vlkgvsldlepGervavvGasGaGKstLlallaglldplkGevtldgvsvaslsesevrrvvsvlaqdaHlFdttvreNlrlarpda.tdeellaaLervgLadwlra.LpdGldtklgeggarlSGGerqRlalARaLladapvllLDEPtehLDaeteeelledLl..aaeegrtvvlvthrl 530 
                  +f + + +  A  + t + +a e + ++ d     +  + +s + a +a+  + +++l+d+ ++yp+     + +g +l+++ G+ va+ G+sG+GKst++al+ ++ dp++G+v+ldgv+v +l+ s +r+ + ++ q++ lF  tv eN+  ++ ++ t++e+++a  ++  ++ + + Lp+ ++t++g +g  lSGG++qR+a+ARaL+ +  vllLDE t  LD e e+ + ++L    a++++t++ ++hrl
  MMETSP1137-20121227|4380_1 1212 VFFMAMGIGMASSTATDASKAKEALLALFDRLerqSAIDPSSTEGARPAS-CAGDIQLQDVVFAYPTRLDytICNGYTLHVPSGQVVALCGPSGSGKSTIIALVERFYDPQEGSVMLDGVDVRTLNVSWLRQQIGLVGQEPMLFVGTVAENIAYGKVEGcTQQEIEEAATKANAHSFIVEnLPQQYQTQVGIRGGKLSGGQKQRVAIARALVRKPAVLLLDEATSALDNESEKIVQAALDdmMAKQKKTTITIAHRL 1467
                  44444555555555555555555555555544110222222222222222.47789**********9876679**********************************************************************************97644**************9986544**************************************************998888887446788999******86 PP

>> TIGR00957  MRP_assoc_pro: multi drug resistance-associated protein (MRP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0       1.7     1e+02    1016    1089 ..     149     227 ..     130     255 .. 0.68
   2 !  123.5   0.0   1.9e-38   1.2e-36    1281    1518 ..     518     763 ..     501     766 .. 0.92
   3 !    9.3   0.1   0.00056     0.034    1009    1177 ..     925    1101 ..     913    1119 .. 0.78
   4 !  130.8   0.0   1.2e-40   7.4e-39    1272    1518 ..    1256    1505 ..    1221    1508 .. 0.90

  Alignments for each domain:
  == domain 1    score: -2.2 bits;  conditional E-value: 1.7
   TIGR00957 1016 ilqgiav.lgysmavsiggilasr...vlhldllhnvlrspmsffertpsgnlvnrfskeldvvdsvla.evikmllgs 1089
                  ++ g+a+ +g  + + +  i   r   + +++ +++++r  +s+f++    +l   +   + ++++ l  +v++++ +s
  MMETSP1137-20121227|4380_1  149 VVVGVALwFGTGIYMGATDIAKVRmmaCYKKEYVKSIIRQDLSWFDTNNPSELAPGIGAAMSTIEDGLGnKVMQLFENS 227 
                  444544325555555555555554111678999**************99999999999999998776651566666555 PP

  == domain 2    score: 123.5 bits;  conditional E-value: 1.9e-38
   TIGR00957 1281 ksgrvefrnyslryredldl.vlrdlnvtieggekvgivgrtgagkssltlglfrinesaegeiiidglniakiglhdlrfkltiipqdpvlfsgslrmnldpfsq..ysdeevwlalelahlkdfvs.alpdkldfecaeggenlsvgqrqlvclarallrktkilvldeataavdletdnliqstirtqfe..dctvltiahrlntimdytrvlvldkgevaefdapsellq..qrgifysmak 1518
                   +g++e ++  + y    d+ v +  ++++  g+ v + g++g+gks++   + r  +  +g +  dg+++  + +  lr ++ ++ q+pvlf g++  n+    +   ++ee+  a e+a  ++f+   lpd+   +  +gg +ls gq+q v +ara +r   + +ldeat+a+d  ++ ++q ++ + +   + t +tiahrl ti +  ++ v+ kg+v e ++  +ll+  q g fy +a+
  MMETSP1137-20121227|4380_1  518 VRGEIEVKDVYFAYPSAPDVqVCNGYSLHVPAGQVVALCGQSGSGKSTIINLVERFYDPHRGAVHFDGVDVRTLNVSWLRQQIGLVGQEPVLFVGTVAENIAYGKKdgATQEEIEAAAEMANAHGFIKdKLPDGYGTQVGQGGSKLSGGQKQRVAIARAXVRXPAVXLLDEATSALDTASERVVQKALDSLMAkrKRTTITIAHRLSTIRNADKIAVVHKGQVVESGTYDKLLAigQGGRFYELAQ 763 
                  479***********999997477889************************************************************************9997544322689***************97368********************************************************998775226799********************************98644899***9997 PP

  == domain 3    score: 9.3 bits;  conditional E-value: 0.00056
   TIGR00957 1009 svyaalgilqgiavlgysmavsiggilasrvlhldllhnvlrspmsffer..tpsgnlvnrfskeldvvdsvlaevikmllgslfnvigavivill..atplaavii..lplallyflvqrfy..vassrqlkrlesvsrspvyshfnetllgvsvirafeeqerfiiqsdlkvden 1177
                  +vy  +g++  +++ + + ++ i g   +  l    + + l+  m +f+     +g+l   +  ++  v+ +  e i  ll ++f+ ++ + +++      l  v++  +p+  l + vq +    a+ +   +  +       s + e ++g+  + +f  ++ f  +   kvde 
  MMETSP1137-20121227|4380_1  925 CVYIIIGVVAVAVITAETACLGIPGQHLTTNLRSLCMRTFLKQDMGYFDAesNSAGELTSFLEEKVTLVQAMNGEKIGTLLRTIFTLVSGLGLVFYfgYWQLSLVMLasVPIIALAMSVQMMVqlGATKQGAEKSGAKEEKSAGSFIGEVVIGIRTVSSFSAEQTFFNMYCEKVDEM 1101
                  689999999988899999999***************************86225679999999999***********************98865543112223333321134444445555543113555555666666677789999********************9999999985 PP

  == domain 4    score: 130.8 bits;  conditional E-value: 1.2e-40
   TIGR00957 1272 etappsswpksgrvefrnyslryredldlvl.rdlnvtieggekvgivgrtgagkssltlglfrinesaegeiiidglniakiglhdlrfkltiipqdpvlfsgslrmnld..pfsqysdeevwlalelahlkdf.vsalpdkldfecaeggenlsvgqrqlvclarallrktkilvldeataavdletdnliqstirtqf..edctvltiahrlntimdytrvlvldkgevaefdapsellqqrgifysmak 1518
                  +++p s    +g++++++  + y   ld+ + +  ++++  g+ v + g +g+gks++   + r  +  eg +++dg+++  + +  lr ++ ++ q+p+lf g++  n+        +++e+  a   a  ++f v  lp++ + +    g +ls gq+q v +aral+rk  +l+ldeat+a+d e+++++q+++   +  ++ t +tiahrl ti     + v+++g+v e +  + llqqrgi++ + +
  MMETSP1137-20121227|4380_1 1256 GARPAS---CAGDIQLQDVVFAYPTRLDYTIcNGYTLHVPSGQVVALCGPSGSGKSTIIALVERFYDPQEGSVMLDGVDVRTLNVSWLRQQIGLVGQEPMLFVGTVAENIAygKVEGCTQQEIEEAATKANAHSFiVENLPQQYQTQVGIRGGKLSGGQKQRVAIARALVRKPAVLLLDEATSALDNESEKIVQAALDDMMakQKKTTITIAHRLSTIRGADLIAVINRGKVVERGNHTSLLQQRGIYFDLVQ 1505
                  444443...4799***************97626799***********************99*********************************************99985225677899**************945789********************************************************987662257899****************************************98865 PP

>> TIGR00972  3a0107s01c2: phosphate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  128.8   0.0   7.8e-40   4.7e-38      13     231 ..     536     750 ..     521     757 .. 0.85
   2 !  131.0   0.1   1.6e-40   9.5e-39      18     233 ..    1285    1496 ..    1266    1498 .. 0.85

  Alignments for each domain:
  == domain 1    score: 128.8 bits;  conditional E-value: 7.8e-40
   TIGR00972  13 ekealkdvnleikknkvtaliGpsGcGkstllrslnrlndlveevrieGkvllegkdiydkkldvvelrkkvGmvfqkpnpfpmsiydnvayglrlkgikdkkeldeive....esLkkaalwdevkdklkksalsLsGGqqqrlciaralavePevlLlDePtsaLDpiatekieeliqeL..kkkytivivthnmqqaarvsdktaffleGelveegeteqif 231
                 + ++ +  +l++++ +v+al G sG+Gkst++  + r+ d       +G+v+++g d+    l+v  lr+++G+v q+p  f  ++ +n+ayg +   ++  +e+++++e    +   k  l d   +++ + + +LsGGq+qr++iara    P v LlDe tsaLD  + + +++ +++L  k+k t + + h ++ ++r +dk+a++++G++ve+g+ ++++
  MMETSP1137-20121227|4380_1 536 DVQVCNGYSLHVPAGQVVALCGQSGSGKSTIINLVERFYDPH-----RGAVHFDGVDVRT--LNVSWLRQQIGLVGQEPVLFVGTVAENIAYGKKDGATQ--EEIEAAAEmanaHGFIKDKLPDGYGTQVGQGGSKLSGGQKQRVAIARAXVRXPAVXLLDEATSALDTASERVVQKALDSLmaKRKRTTITIAHRLS-TIRNADKIAVVHKGQVVESGTYDKLL 750
                 457788999******************************998.....8*********975..6999***************************9976544..4444444400014567777888888899999************************************************9444558999999**97.6899****************999886 PP

  == domain 2    score: 131.0 bits;  conditional E-value: 1.6e-40
   TIGR00972   18 kdvnleikknkvtaliGpsGcGkstllrslnrlndlveevrieGkvllegkdiydkkldvvelrkkvGmvfqkpnpfpmsiydnvayglrlkgikdkkeldeiveesLkka....alwdevkdklkksalsLsGGqqqrlciaralavePevlLlDePtsaLDpiatekieeliqeL..kkkytivivthnmqqaarvsdktaffleGelveegeteqifek 233 
                  +  +l++++ +v+al GpsG+Gkst++  + r+ d       eG+v+l+g d+    l+v  lr+++G+v q+p  f  ++ +n+ayg +++g  +++e++e++ ++  ++     l ++ ++++   + +LsGGq+qr++iaral  +P vlLlDe tsaLD ++ + +++ ++++  k+k t + + h ++ ++r +d +a++ +G++ve g+ ++++++
  MMETSP1137-20121227|4380_1 1285 NGYTLHVPSGQVVALCGPSGSGKSTIIALVERFYDPQ-----EGSVMLDGVDVRT--LNVSWLRQQIGLVGQEPMLFVGTVAENIAYG-KVEGC-TQQEIEEAATKANAHSfiveNLPQQYQTQVGIRGGKLSGGQKQRVAIARALVRKPAVLLLDEATSALDNESEKIVQAALDDMmaKQKKTTITIAHRLS-TIRGADLIAVINRGKVVERGNHTSLLQQ 1496
                  5678999****************************98.....9*********975..6999**************************9.56764.44556666665555550001566666777777899********************************************99844566899999***97.789*****************99998875 PP

>> TIGR01186  proV: glycine betaine/L-proline transport ATP binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  114.9   0.0   1.5e-35   9.1e-34      10     218 ..     541     750 ..     536     756 .. 0.85
   2 !  116.6   0.1   4.6e-36   2.8e-34      12     218 ..    1287    1494 ..    1281    1499 .. 0.88

  Alignments for each domain:
  == domain 1    score: 114.9 bits;  conditional E-value: 1.5e-35
   TIGR01186  10 ndvdleieeGeiiviiGlsGsGkstlvrllnrliePtaGkilidGediaeisdaelrevrrkkiamviqkialfPhmtildnislglellkideqerkekalealklvdl......eeyedry...PdelsGGmqqrvGlaralaaePdlllmdeafsaldPlirdelqdelvklqkklqktivfithdldealrlgdrivilkaGeivqvGtPdeil 218
                 n  +l++  G+++ + G sGsGkst++ l++r+ +P +G ++ dG+d+  ++   l    r++i++v q+  lf   t+ +ni++g +    +  e  e a e+    ++      ++y  +      +lsGG++qrv +ara    P + l+dea sald      +q+ l  l +k ++t + i+h l  ++r +d+i+++++G++v  Gt d++l
  MMETSP1137-20121227|4380_1 541 NGYSLHVPAGQVVALCGQSGSGKSTIINLVERFYDPHRGAVHFDGVDVRTLNVSWL----RQQIGLVGQEPVLFV-GTVAENIAYGKKDGATQ--EEIEAAAEMANAHGFikdklpDGYGTQVgqgGSKLSGGQKQRVAIARAXVRXPAVXLLDEATSALDTASERVVQKALDSLMAKRKRTTITIAHRLS-TIRNADKIAVVHKGQVVESGTYDKLL 750
                 667999************************************************99....9*********99996.69********9854433..3334444444333322200135665554111568*************************************************************6.79*********************998 PP

  == domain 2    score: 116.6 bits;  conditional E-value: 4.6e-36
   TIGR01186   12 vdleieeGeiiviiGlsGsGkstlvrllnrliePtaGkilidGediaeisdaelrevrrkkiamviqkialfPhmtildnislglellkideqerkekalealklvdl.eeyedryPde.......lsGGmqqrvGlaralaaePdlllmdeafsaldPlirdelqdelvklqkklqktivfithdldealrlgdrivilkaGeivqvGtPdeil 218 
                    l++  G+++ + G+sGsGkst++ l++r+ +P +G +++dG+d+  ++   l    r++i++v q+  lf   t+ +ni++g ++ +  +qe +e a +a     + e+  ++y  +       lsGG++qrv +aral  +P +ll+dea sald    + +q  l ++ +k +kt + i+h l  ++r +d i++++ G++v  G    +l
  MMETSP1137-20121227|4380_1 1287 YTLHVPSGQVVALCGPSGSGKSTIIALVERFYDPQEGSVMLDGVDVRTLNVSWL----RQQIGLVGQEPMLFV-GTVAENIAYG-KVEGCTQQEIEEAATKANAHSFIvENLPQQYQTQvgirggkLSGGQKQRVAIARALVRKPAVLLLDEATSALDNESEKIVQAALDDMMAKQKKTTITIAHRLS-TIRGADLIAVINRGKVVERGNHTSLL 1494
                  678999**********************************************99....9*********99996.69*******9.789999999999888776554444666666654322223339************************************************************6.79***************999877766 PP

>> TIGR02314  ABC_MetN: D-methionine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  114.9   0.0   1.4e-35   8.2e-34      14     230 ..     533     751 ..     522     764 .. 0.86
   2 !  116.1   0.2   5.8e-36   3.5e-34      20     227 ..    1283    1492 ..    1266    1499 .. 0.84

  Alignments for each domain:
  == domain 1    score: 114.9 bits;  conditional E-value: 1.4e-35
   TIGR02314  14 gdkkikaldnvslfvpkgqifgvigasgagkstlircvnllekptsgavivdgkdlttlsnaelvkarrqigmifqhfnllssrtvfgnvalplelentpkekikrkvtellalvglsdkk.dsy.......psnlsggqkqrvaiaralasepkvllcdeatsaldpattqsilellkeinrrlgltillithemdvvkricdevavidkgeliekgtvseifs 230
                 +  +++  +  sl+vp+gq++ + g sg+gkst+i  v+ +  p  gav  dg+d+ tl+ + l   r+qig++ q   l    tv +n+a     ++ ++e+i+   +   a   + dk  d y        s lsggqkqrvaiara    p v l deatsald a+ + + + l  +  + + t + i+h +  +++  d++av++kg+++e gt  ++++
  MMETSP1137-20121227|4380_1 533 SAPDVQVCNGYSLHVPAGQVVALCGQSGSGKSTIINLVERFYDPHRGAVHFDGVDVRTLNVSWL---RQQIGLVGQEPVL-FVGTVAENIAYGK-KDGATQEEIEAAAEMANAHGFIKDKLpDGYgtqvgqgGSKLSGGQKQRVAIARAXVRXPAVXLLDEATSALDTASERVVQKALDSLMAKRKRTTITIAHRLSTIRN-ADKIAVVHKGQVVESGTYDKLLA 751
                 55678899999************************************************87665...99*******9765.567*******985.699999***9876554454445666347773333322578**********************************************99999999********9976.8***************9988776 PP

  == domain 2    score: 116.1 bits;  conditional E-value: 5.8e-36
   TIGR02314   20 aldnvslfvpkgqifgvigasgagkstlircvnllekptsgavivdgkdlttlsnaelvkarrqigmifqhfnllssrtvfgnvalplelentpkekikrkvtellalvglsdk.kdsy.......psnlsggqkqrvaiaralasepkvllcdeatsaldpattqsilellkeinrrlgltillithemdvvkricdevavidkgeliekgtvse 227 
                    +  +l+vp gq++ + g sg+gkst+i  v+ +  p +g+v++dg+d+ tl+ + l   r+qig++ q    l   tv +n+a   ++e+ ++++i++  t+  a   + +   + y          lsggqkqrvaiaral  +p vll deatsald  + + +   l ++  + + t + i+h +  ++   d +avi++g+++e+g  + 
  MMETSP1137-20121227|4380_1 1283 ICNGYTLHVPSGQVVALCGPSGSGKSTIIALVERFYDPQEGSVMLDGVDVRTLNVSWL---RQQIGLVGQEPM-LFVGTVAENIAYG-KVEGCTQQEIEEAATKANAHSFIVENlPQQYqtqvgirGGKLSGGQKQRVAIARALVRKPAVLLLDEATSALDNESEKIVQAALDDMMAKQKKTTITIAHRLSTIR-GADLIAVINRGKVVERGNHTS 1492
                  556779***********************************************87665...99*******965.5668*******97.78999999999988877765444333123341111122468***********************************************9999999********996.58**************98665 PP

>> TIGR03864  PQQ_ABC_ATP: ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  109.9   0.1   4.7e-34   2.8e-32       2     221 ..     522     751 ..     521     763 .. 0.85
   2 !  117.7   0.2   1.9e-36   1.1e-34      15     224 ..    1282    1498 ..    1265    1506 .. 0.84

  Alignments for each domain:
  == domain 1    score: 109.9 bits;  conditional E-value: 4.7e-34
   TIGR03864   2 leveglsfaygkr...ralddvsltvakgefvaLLGpnGaGkstLfslltrLyeakegeikvaGldlrrapkeala.rlGvvfqqstlDldlsveqnlryhaaLhGlsraeaeerieealarl....glaeraeekv....reLnGGhrrrveiarallhePklLLlDeatvGLDiesraalveevrelvreeglsvLWathlvdeveaedrlvvlhkGkvlaqGaaaelaa 221
                 +ev+++ fay +    ++ ++ sl+v+ g++vaL G  G+Gkst+++l+ r y+ ++g ++  G+d+r+ +++ l+ ++G+v q++ l +  +v++n+ y  +  G +++e e+  e a a+     +l +   ++v     +L+GG+++rv iara +  P++ LlDeat  LD++s + +++++ +l+++++ + +   h +  ++++d++ v+hkG+v+ +G+ ++l a
  MMETSP1137-20121227|4380_1 522 IEVKDVYFAYPSApdvQVCNGYSLHVPAGQVVALCGQSGSGKSTIINLVERFYDPHRGAVHFDGVDVRTLNVSWLRqQIGLVGQEPVLFVG-TVAENIAYG-KKDGATQEEIEAAAEMANAHGfikdKLPDGYGTQVgqggSKLSGGQKQRVAIARAXVRXPAVXLLDEATSALDTASERVVQKALDSLMAKRKRTTITIAHRLSTIRNADKIAVVHKGQVVESGTYDKLLA 751
                 6888999999764222678899*************************************************9999637*********9875.9******95.55777776655555444444300114555556666333358***********************************************************************************999876 PP

  == domain 2    score: 117.7 bits;  conditional E-value: 1.9e-36
   TIGR03864   15 ralddvsltvakgefvaLLGpnGaGkstLfslltrLyeakegeikvaGldlrrapkeala.rlGvvfqqstlDldlsveqnlryhaaLhGlsraeaeerieealarl....glaeraeekv..r..eLnGGhrrrveiarallhePklLLlDeatvGLDiesraalveevrelvreeglsvLWathlvdeveaedrlvvlhkGkvlaqGaaaelaaead 224 
                  ++ ++ +l+v++g++vaL Gp G+Gkst+++l+ r y+ +eg++ + G+d+r+ +++ l+ ++G+v q++ l +  +v++n+ y  +++G +++e ee  ++a a+     +l ++ +++v  r  +L+GG+++rv iaral+ +P++LLlDeat  LD es + +++++ +++++++ + +   h +  ++ +d + v+++Gkv+ +G  ++l ++++
  MMETSP1137-20121227|4380_1 1282 TICNGYTLHVPSGQVVALCGPSGSGKSTIIALVERFYDPQEGSVMLDGVDVRTLNVSWLRqQIGLVGQEPMLFVG-TVAENIAY-GKVEGCTQQEIEEAATKANAHSfiveNLPQQYQTQVgiRggKLSGGQKQRVAIARALVRKPAVLLLDEATSALDNESEKIVQAALDDMMAKQKKTTITIAHRLSTIRGADLIAVINRGKVVERGNHTSLLQQRG 1498
                  4567789************************************************9999637********99875.9*****98.689999988777666555444311114445555554223449**************************************************************************************999875 PP

>> TIGR00968  3a0106s01: sulfate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.6   0.1   8.1e-32   4.9e-30      12     218 ..     536     749 ..     522     754 .. 0.84
   2 !  112.7   0.1     7e-35   4.2e-33      14     220 ..    1282    1495 ..    1268    1503 .. 0.82

  Alignments for each domain:
  == domain 1    score: 102.6 bits;  conditional E-value: 8.1e-32
   TIGR00968  12 dfqalddvdlevktGslvallGpsGsGkstllrviaGlekpdsGrilleGrdvtrvkvr..dreiGfvfqhyalfkhltvrdniafGleir.kkdkakikakveellelvqleklgdrypsq.......lsGGqrqrvalaralavepqvllldepfgaldakvrkelrawlrklhdevkvttvfvthdqeealevadrivvlekGkieqvgsaeev 218
                 d+q+ +  +l+v+ G++val G sGsGkst++ ++  + +p  G + ++G dv  ++v   +++iG+v q+  lf   tv +nia+G +    +++ +  a + +   +++ +kl d y +q       lsGGq+qrva+ara    p v llde  +ald+   + +++ l  l  + k tt+ ++h  + ++  ad+i+v++kG++ + g+ +++
  MMETSP1137-20121227|4380_1 536 DVQVCNGYSLHVPAGQVVALCGQSGSGKSTIINLVERFYDPHRGAVHFDGVDVRTLNVSwlRQQIGLVGQEPVLFVG-TVAENIAYGKKDGaTQEEIEAAAEMANAHGFIK-DKLPDGYGTQvgqggskLSGGQKQRVAIARAXVRXPAVXLLDEATSALDTASERVVQKALDSLMAKRKRTTITIAHRLS-TIRNADKIAVVHKGQVVESGTYDKL 749
                 67899999*********************************************8776643389************85.9********875424444555556666666664.567777754433333339**********************************************************876.5778************999987765 PP

  == domain 2    score: 112.7 bits;  conditional E-value: 7e-35
   TIGR00968   14 qalddvdlevktGslvallGpsGsGkstllrviaGlekpdsGrilleGrdvtrvkvr..dreiGfvfqhyalfkhltvrdniafGleir.....kkdkakikakveellelvqleklgdrypsq.......lsGGqrqrvalaralavepqvllldepfgaldakvrkelrawlrklhdevkvttvfvthdqeealevadrivvlekGkieqvgsaeevyd 220 
                  ++ +   l+v++G++val GpsGsGkst++ ++  + +p++G ++l+G dv  ++v   +++iG+v q+  lf   tv +nia+G  ++      +++a++ka+ +       +e+l ++y +q       lsGGq+qrva+aral  +p vlllde  +ald +  k ++a l  +  + k tt+ ++h  + ++  ad i+v+++Gk+ + g  + + +
  MMETSP1137-20121227|4380_1 1282 TICNGYTLHVPSGQVVALCGPSGSGKSTIIALVERFYDPQEGSVMLDGVDVRTLNVSwlRQQIGLVGQEPMLFVG-TVAENIAYGK-VEgctqqEIEEAATKANAHS----FIVENLPQQYQTQvgirggkLSGGQKQRVAIARALVRKPAVLLLDEATSALDNESEKIVQAALDDMMAKQKKTTITIAHRLS-TIRGADLIAVINRGKVVERGNHTSLLQ 1495
                  55667789*******************************************8776643389************75.9*******94.44111114444444444443....334555555554433333339**********************************************************876.6789************99888777665 PP

>> TIGR01277  thiQ: thiamine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.6   0.0   7.7e-32   4.6e-30      16     208 ..     542     741 ..     522     745 .. 0.80
   2 !  107.8   0.1     2e-33   1.2e-31      13     209 ..    1283    1486 ..    1266    1490 .. 0.81

  Alignments for each domain:
  == domain 1    score: 102.6 bits;  conditional E-value: 7.7e-32
   TIGR01277  16 efdlsveaGervailGesGaGkstllnliaGflepasGeikvndkdhtrs..apyerpvsmlfqennlfahltvrqniglGlkpglklnavqkekvedvarqvGiadyl.erlpe...........elsGGqrqrvalarclvrekpillldepfsaldpklreemlalvkkladekkltlllvthslsdaaaiasqvvvvedGkik 208
                  ++l v aG+ va+ G+sG+Gkst++nl+  f  p +G+++ +++d+ ++  +  ++ + ++ qe  lf   tv++ni+ G k g       +e++e++a+      ++ ++lp+           +lsGGq+qrva+ar  vr   + llde  sald +  + +   +  l  ++k+t + ++h+ls + + a++++vv++G++ 
  MMETSP1137-20121227|4380_1 542 GYSLHVPAGQVVALCGQSGSGKSTIINLVERFYDPHRGAVHFDGVDVRTLnvSWLRQQIGLVGQEPVLFVG-TVAENIAYGKKDGAT-----QEEIEAAAEMANAHGFIkDKLPDgygtqvgqggsKLSGGQKQRVAIARAXVRXPAVXLLDEATSALDTASERVVQKALDSLMAKRKRTTITIAHRLSTI-RNADKIAVVHKGQVV 741
                 489****************************************999877611556899***********85.9********988854.....33343333333333322133442222222222228**********************************99999999999999*************975.679**********96 PP

  == domain 2    score: 107.8 bits;  conditional E-value: 2e-33
   TIGR01277   13 lplefdlsveaGervailGesGaGkstllnliaGflepasGeikvndkdhtrs..apyerpvsmlfqennlfahltvrqniglGlkpglklnavqkekvedvarqvGiadylerlp.......eelsGGqrqrvalarclvrekpillldepfsaldpklreemlalvkkladekkltlllvthslsdaaaiasqvvvvedGkikv 209 
                      + l v +G+ va+ G+sG+Gkst+++l+  f  p +G+++++++d+ ++  +  ++ + ++ qe  lf   tv++ni+ G   g   + +++   ++ a++  ++++ ++         ++lsGGq+qrva+ar lvr+  +lllde  sald+   + + a +  +  ++k+t + ++h+ls ++  a+ ++v++ Gk+  
  MMETSP1137-20121227|4380_1 1283 ICNGYTLHVPSGQVVALCGPSGSGKSTIIALVERFYDPQEGSVMLDGVDVRTLnvSWLRQQIGLVGQEPMLFVG-TVAENIAYGKVEGCTQQEIEEAATKANAHSFIVENLPQQYQtqvgirgGKLSGGQKQRVAIARALVRKPAVLLLDEATSALDNESEKIVQAALDDMMAKQKKTTITIAHRLSTIR-GADLIAVINRGKVVE 1486
                  344589****************************************999877611456899***********85.9********888877777777777777777777776554431112222679********************************************999999**********9765.58999*****99965 PP

>> TIGR01187  potA: polyamine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.3   0.1   3.1e-30   1.9e-28       1     186 [.     555     747 ..     555     753 .. 0.84
   2 !  115.1   0.4   1.2e-35   7.1e-34       1     187 [.    1299    1492 ..    1299    1501 .. 0.84

  Alignments for each domain:
  == domain 1    score: 97.3 bits;  conditional E-value: 3.1e-30
   TIGR01187   1 lLGpsGsGkttlLrllaGleeldsGkilldgedvt..evpaekrsvnvvfqsyaLfPhmtveenvafgLkmrkvpkaeike..rvkeaLelvq..l.eefak...rkpsqlsGGqrqrvalaravvkkPkiLLlDeplsaLDkkLrdqmqlelkalqeklGitvvlvthDqeealtmsdriavlrkGkiaqigepe 186
                 l G sGsGk+t++ l+  + ++  G + +dg+dv   +v+  ++++++v q+  Lf   tv+en+a+g k ++  ++ei++   + +a   ++  l +++++   +  s+lsGGq+qrva+ara v  P + LlDe+ saLD      +q+ l +l  k   t++ ++h     +  +d+iav++kG+++  g+ +
  MMETSP1137-20121227|4380_1 555 LCGQSGSGKSTIINLVERFYDPHRGAVHFDGVDVRtlNVSWLRQQIGLVGQEPVLFV-GTVAENIAYGKK-DGATQEEIEAaaEMANAHGFIKdkLpDGYGTqvgQGGSKLSGGQKQRVAIARAXVRXPAVXLLDEATSALDTASERVVQKALDSLMAKRKRTTITIAHRL-STIRNADKIAVVHKGQVVESGTYD 747
                 579******************************962367778999***********7.59********66.666666666511556666666522423455411134679***********************************************************76.5899*************9998765 PP

  == domain 2    score: 115.1 bits;  conditional E-value: 1.2e-35
   TIGR01187    1 lLGpsGsGkttlLrllaGleeldsGkilldgedvt..evpaekrsvnvvfqsyaLfPhmtveenvafgLkmrkvpkaeikervkeaLe.lvqleefakrkpsq.......lsGGqrqrvalaravvkkPkiLLlDeplsaLDkkLrdqmqlelkalqeklGitvvlvthDqeealtmsdriavlrkGkiaqigepee 187 
                  l GpsGsGk+t++ l+  + ++++G+++ldg+dv   +v+  ++++++v q+  Lf   tv+en+a+g k+++  ++ei+e  ++a      +e++ +++ +q       lsGGq+qrva+ara+v kP +LLlDe+ saLD++  + +q  l ++  k   t++ ++h     +  +d iav+++Gk++  g+   
  MMETSP1137-20121227|4380_1 1299 LCGPSGSGKSTIIALVERFYDPQEGSVMLDGVDVRtlNVSWLRQQIGLVGQEPMLFV-GTVAENIAYG-KVEGCTQQEIEEAATKANAhSFIVENLPQQYQTQvgirggkLSGGQKQRVAIARALVRKPAVLLLDEATSALDNESEKIVQAALDDMMAKQKKTTITIAHRL-STIRGADLIAVINRGKVVERGNHTS 1492
                  57*******************************962367778999***********7.59*******9.888888888887665543213333444444433322222229**********************************************************76.57999************99887665 PP

>> TIGR02315  ABC_phnC: phosphonate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.0   0.0   1.6e-29   9.8e-28       2     230 ..     522     746 ..     521     751 .. 0.83
   2 !  107.6   0.2   2.3e-33   1.4e-31      16     233 ..    1282    1493 ..    1266    1500 .. 0.83

  Alignments for each domain:
  == domain 1    score: 95.0 bits;  conditional E-value: 1.6e-29
   TIGR02315   2 levenlskvypn..gkqalknvnleikkGelvaviGlsGaGkstllrsinrlveissgsillegkevtklkkkelrklrkkigmifqeynlierltvlenvLsgrlg..akstlksllglfseedkekAlelLe.rv..glaelaakradqLsGGqqqRvaiaRalaqqpklilaDEPiasLDpksskqvmdllkrinkekgitvivnlHqvdlakkyadrivglkageivfdgas 230
                 +ev+++   yp+  + q+ +  +l++  G++va+ G+sG+Gkst++  ++r+ ++++g++ ++g +v++l+   +  lr++ig++ qe  l    tv en+  g+    +++ ++        ++ ++A   ++ ++  g   +  +  ++LsGGq+qRvaiaRa ++ p++ l DE +++LD +s + v ++l ++  +++ t+i   H+++  ++ ad+i  +++g++v  g+ 
  MMETSP1137-20121227|4380_1 522 IEVKDVYFAYPSapDVQVCNGYSLHVPAGQVVALCGQSGSGKSTIINLVERFYDPHRGAVHFDGVDVRTLN---VSWLRQQIGLVGQEPVLF-VGTVAENIAYGKKDgaTQEEIEA------AAEMANAHGFIKdKLpdGYGTQVGQGGSKLSGGQKQRVAIARAXVRXPAVXLLDEATSALDTASERVVQKALDSLMAKRKRTTITIAHRLSTIRN-ADKIAVVHKGQVVESGTY 746
                 78999999998744689999***********************************************9665...667899********7665.5799****999854003333333......2333333333321222266777888999**************************************************************98865.9***********977765 PP

  == domain 2    score: 107.6 bits;  conditional E-value: 2.3e-33
   TIGR02315   16 qalknvnleikkGelvaviGlsGaGkstllrsinrlveissgsillegkevtklkkkelrklrkkigmifqeynlierltvlenvLsgrlgakstlksllglfseedkekAlelLervglaelaakradqLsGGqqqRvaiaRalaqqpklilaDEPiasLDpksskqvmdllkrinkekgitvivnlHqvdlakkyadrivglkageivfdgassel 233 
                  ++ +   l++ +G++va+ G+sG+Gkst++  ++r+ ++++gs++l+g +v++l+   +  lr++ig++ qe  l    tv en+  g++   ++ +      + + ++  +e+L + + + +   r  +LsGGq+qRvaiaRal+++p+++l DE +++LD++s k+v  +l ++  +++ t+i   H+++  +  ad i  ++ g++v +g+ ++l
  MMETSP1137-20121227|4380_1 1282 TICNGYTLHVPSGQVVALCGPSGSGKSTIIALVERFYDPQEGSVMLDGVDVRTLN---VSWLRQQIGLVGQEPMLF-VGTVAENIAYGKVEGCTQQEIEEAATKANAHSFIVENLPQ-QYQTQVGIRGGKLSGGQKQRVAIARALVRKPAVLLLDEATSALDNESEKIVQAALDDMMAKQKKTTITIAHRLSTIR-GADLIAVINRGKVVERGNHTSL 1493
                  5566778999*****************************************9665...667899********8765.5799********9876655543444444445556666665.56778889*****************************************************************9876.59999999*****988877665 PP

>> TIGR03265  PhnT2: putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.3   0.0   3.8e-30   2.3e-28      18     220 ..     538     747 ..     522     752 .. 0.83
   2 !  104.2   0.4   2.9e-32   1.8e-30      18     222 ..    1282    1493 ..    1266    1501 .. 0.83

  Alignments for each domain:
  == domain 1    score: 97.3 bits;  conditional E-value: 3.8e-30
   TIGR03265  18 talkdislsvkkgelvclLGPsGCGkttLLriiaGLekqdaGaillggrditrlppq..krdyGivfqsYaLfPnltvaeniayGLknkklkre..evaerveelLelv......glsgseekyPgqlsGGqqqrvaLaralalsPglLLLDePlsaLDakvrekLreelkklqrklgvttimvthdqeealslaDrivvmnkgkieqvgtPe 220
                 ++ +  sl+v +g +v+l G sG Gk+t++ ++  + ++++Ga++ +g d+ +l ++  +++ G+v q  +Lf   tvaeniayG k+   ++e  e+a+ ++++   +      g  ++  +  ++lsGGq+qrva+ara +  P + LLDe  saLD      +++ l +l  k + tti ++h     +  aD+i+v+ kg++   gt  
  MMETSP1137-20121227|4380_1 538 QVCNGYSLHVPAGQVVALCGQSGSGKSTIINLVERFYDPHRGAVHFDGVDVRTLNVSwlRQQIGLVGQEPVLFVG-TVAENIAYGKKDGA-TQEeiEAAAEMANAHGFIkdklpdGYGTQVGQGGSKLSGGQKQRVAIARAXVRXPAVXLLDEATSALDTASERVVQKALDSLMAKRKRTTITIAHRL-STIRNADKIAVVHKGQVVESGTYD 747
                 5667789********************************************988765337899**********86.9********87655.3330133444444444442211112223334445679*******************************9999999********************86.57999***************9965 PP

  == domain 2    score: 104.2 bits;  conditional E-value: 2.9e-32
   TIGR03265   18 talkdislsvkkgelvclLGPsGCGkttLLriiaGLekqdaGaillggrditrlppq..krdyGivfqsYaLfPnltvaeniayGLknkklkr..eevaerveelLelv.glsgseeky....PgqlsGGqqqrvaLaralalsPglLLLDePlsaLDakvrekLreelkklqrklgvttimvthdqeealslaDrivvmnkgkieqvgtPeei 222 
                  t+ +   l+v  g +v+l GPsG Gk+t++ ++  + ++++G+++l+g d+ +l ++  +++ G+v q   Lf   tvaeniayG  +  +++  ee+a++ +    +v +l+++ +       g+lsGGq+qrva+aral+ +P +LLLDe  saLD    + ++  l ++  k + tti ++h     +  aD i+v+n+gk+   g  + +
  MMETSP1137-20121227|4380_1 1282 TICNGYTLHVPSGQVVALCGPSGSGKSTIIALVERFYDPQEGSVMLDGVDVRTLNVSwlRQQIGLVGQEPMLFVG-TVAENIAYGKVEGCTQQeiEEAATKANAHSFIVeNLPQQYQTQvgirGGKLSGGQKQRVAIARALVRKPAVLLLDEATSALDNESEKIVQAALDDMMAKQKKTTITIAHRL-STIRGADLIAVINRGKVVERGNHTSL 1493
                  666777899******************************************988765337899**********86.9********775443331144445555444444245554443212225789**********************************************************86.57999************999877665 PP

>> TIGR02982  heterocyst_DevA: ABC exporter ATP-binding subunit, DevA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.1   0.0   1.6e-29   9.7e-28      17     219 ..     536     740 ..     521     741 .. 0.82
   2 !  104.1   0.3   2.8e-32   1.7e-30      19     219 ..    1282    1484 ..    1266    1485 .. 0.82

  Alignments for each domain:
  == domain 1    score: 95.1 bits;  conditional E-value: 1.6e-29
   TIGR02982  17 rkqvlfdinleiepgeiviltGpsGsGkttlltligglrsvqeGelkvlgkelkgasekelvqvrrkiGyifqahnllesltaeqnvrmale...lkeklsakeakakaeelleavglee.........rldykpedlsgGqkqrvaiaralvarPklvladePtaaldkksgrevvellqklareqgttillvthdnrildvadrivkmedGkl 219
                   qv +  +l++ +g++v l G+sGsGk t+++l+  +     G +++ g +++ +   ++  +r++iG++ q+  l+   t+ +n+  + +    +e+++a++++a+a+ ++      +         ++ +  ++lsgGqkqrvaiara v  P + l de t+ald+ s r v + l  l  ++  t + ++h    +  ad+i  + +G++
  MMETSP1137-20121227|4380_1 536 DVQVCNGYSLHVPAGQVVALCGQSGSGKSTIINLVERFYDPHRGAVHFDGVDVRTL---NVSWLRQQIGLVGQEPVLFV-GTVAENIAYGKKdgaTQEEIEAAAEMANAHGFI------KdklpdgygtQVGQGGSKLSGGQKQRVAIARAXVRXPAVXLLDEATSALDTASERVVQKALDSLMAKRKRTTITIAHRLSTIRNADKIAVVHKGQV 740
                 569999*****************************************999987765...57789*********998885.588899988864122344455555555555555......33444455559****************************************************999999999999999999999****99999986 PP

  == domain 2    score: 104.1 bits;  conditional E-value: 2.8e-32
   TIGR02982   19 qvlfdinleiepgeiviltGpsGsGkttlltligglrsvqeGelkvlgkelkgasekelvqvrrkiGyifqahnllesltaeqnvrmal.e..lkeklsakeakakaeelleavglee...rldykpedlsgGqkqrvaiaralvarPklvladePtaaldkksgrevvellqklareqgttillvthdnrildvadrivkmedGkl 219 
                   + +   l++ +g++v l GpsGsGk t+++l+  +   qeG++ + g +++ +   ++  +r++iG++ q+  l+   t+ +n+  +  e   +++++++++ka+a++++ + + ++   ++  +  +lsgGqkqrvaiaralv +P ++l de t+ald++s + v   l ++  +q  t + ++h    +  ad i  +++Gk+
  MMETSP1137-20121227|4380_1 1282 TICNGYTLHVPSGQVVALCGPSGSGKSTIIALVERFYDPQEGSVMLDGVDVRTL---NVSWLRQQIGLVGQEPMLFV-GTVAENIAYGKvEgcTQQEIEEAATKANAHSFIVENLPQQyqtQVGIRGGKLSGGQKQRVAIARALVRKPAVLLLDEATSALDNESEKIVQAALDDMMAKQKKTTITIAHRLSTIRGADLIAVINRGKV 1484
                  56677899************************************9999887765...57789*********998885.57888987764232145555666666666665544332224448888999****************************************999999888888888888999888888999999999986 PP

>> TIGR02673  FtsE: cell division ATP-binding protein FtsE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   93.9   0.0   3.7e-29   2.2e-27       2     205 ..     522     731 ..     521     739 .. 0.81
   2 !  102.4   0.1   9.5e-32   5.7e-30       2     199 ..    1266    1469 ..    1265    1480 .. 0.81

  Alignments for each domain:
  == domain 1    score: 93.9 bits;  conditional E-value: 3.7e-29
   TIGR02673   2 ielekvskeya..agveaLkdvslkiekgeflfltGasGaGkttllklllgaekpsrGevevagedvarlrerelpllRrkigvvfqDfkllkdrtvlenvalalevrgkkeeeiqkrveevlelvgledk........akalpeelsgGeqqRvaiaRaivnkPelllaDePtGnlDdelserildllkeln.krGttvivathdeelvervkk 205
                 ie+++v+++y+   +v++ +  sl++ +g+++ l G+sG+Gk+t+++l+     p+rG+v+++g dv++l   +++ lR++ig+v q+  l    tv+en+a     +g+++eei+   e +     ++dk        + +  ++lsgG +qRvaiaRa v+ P++ l De t  lD + ++ + + l +l  kr  t i  +h  + +++ +k
  MMETSP1137-20121227|4380_1 522 IEVKDVYFAYPsaPDVQVCNGYSLHVPAGQVVALCGQSGSGKSTIINLVERFYDPHRGAVHFDGVDVRTL---NVSWLRQQIGLVGQEPVL-FVGTVAENIAYGK-KDGATQEEIEAAAEMANAHGFIKDKlpdgygtqVGQGGSKLSGGQKQRVAIARAXVRXPAVXLLDEATSALDTASERVVQKALDSLMaKRKRTTITIAHRLSTIRNADK 731
                 78899999**955578999***********************************************9988...5899**********9765.5689******985.4777777777766555444444555111111115566789*********************************999999999988651556677777898888877654 PP

  == domain 2    score: 102.4 bits;  conditional E-value: 9.5e-32
   TIGR02673    2 ielekvskeyaa..gveaLkdvslkiekgeflfltGasGaGkttllklllgaekpsrGevevagedvarlrerelpllRrkigvvfqDfkllkdrtvlenvalalevrgkkeeeiqkrveevlel...v.gledkakal....peelsgGeqqRvaiaRaivnkPelllaDePtGnlDdelserildllkel.nkrGttvivathdeel 199 
                  i+l++v ++y++  + ++ +  +l++  g+++ l G+sG+Gk+t++ l+     p++G+v ++g dv++l   +++ lR++ig+v q+  l    tv+en+a   +v+g +++ei++  +++      v +l ++ ++       +lsgG +qRvaiaRa+v+kP++ll De t  lD+e ++ + + l ++  k+  t i  +h  + 
  MMETSP1137-20121227|4380_1 1266 IQLQDVVFAYPTrlDYTICNGYTLHVPSGQVVALCGPSGSGKSTIIALVERFYDPQEGSVMLDGVDVRTL---NVSWLRQQIGLVGQEPML-FVGTVAENIAYG-KVEGCTQQEIEEAATKANAHsfiVeNLPQQYQTQvgirGGKLSGGQKQRVAIARALVRKPAVLLLDEATSALDNESEKIVQAALDDMmAKQKKTTITIAHRLST 1469
                  78999*****9722567899**********************************************9988...5899**********9765.5679******97.89999999998876654332111224555444431111679**********************************99999888876524455566666676655 PP

>> TIGR02142  modC_ABC: molybdate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.3   0.1   1.6e-29   9.4e-28      17     221 ..     544     751 ..     538     766 .. 0.86
   2 !   98.0   0.1   2.4e-30   1.4e-28      18     223 ..    1289    1497 ..    1282    1508 .. 0.83

  Alignments for each domain:
  == domain 1    score: 95.3 bits;  conditional E-value: 1.6e-29
   TIGR02142  17 dlelpgkgvtalFGrsGsGktslirliaGLtrpdegeivldgevlqdsrkkiilppekRrvgyvFqeArLFpHlsvrenLrYGlkraraeerriseekvielL.........giehLleRlpgkLsGGekqRvaigRAlLssPeLLlmDePLaaLDekrkkeilPyLerlsaelkiPilyvsHsldevarladrvvvledGrvkaagkleevla 221
                 +l++p+ +v+al G+sGsGk+++i+l+     p++g ++ dg  +   r  + ++  + ++g v qe  LF   +v+en+ YG k+  ++e     +++ +           g +  +    +kLsGG kqRvai+RA +  P + l+De  +aLD+ + + +   L++l a+ k   + ++H l+ + r ad++ v+++G+v   g+ +++la
  MMETSP1137-20121227|4380_1 544 SLHVPAGQVVALCGQSGSGKSTIINLVERFYDPHRGAVHFDGVDV---R-TLNVSWLRQQIGLVGQEPVLFVG-TVAENIAYGKKDGATQEEIEAAAEMANAHgfikdklpdGYGTQVGQGGSKLSGGQKQRVAIARAXVRXPAVXLLDEATSALDTASERVVQKALDSLMAKRKRTTITIAHRLSTI-RNADKIAVVHKGQVVESGTYDKLLA 751
                 5789999***********************************744...4.4899*****************86.8**********98888743333444443300011113345667888899***************************************************************98.56*****************999876 PP

  == domain 2    score: 98.0 bits;  conditional E-value: 2.4e-30
   TIGR02142   18 lelpgkgvtalFGrsGsGktslirliaGLtrpdegeivldgevlqdsrkkiilppekRrvgyvFqeArLFpHlsvrenLrYGlkraraeerriseek........vielL..giehLleRlpgkLsGGekqRvaigRAlLssPeLLlmDePLaaLDekrkkeilPyLerlsaelkiPilyvsHsldevarladrvvvledGrvkaagkleevlask 223 
                  l++p+ +v+al G sGsGk+++i l+     p+eg ++ldg  +   r  + ++  + ++g v qe  LF   +v+en+ YG  +  +++ +i+e++        ++e L    +  +  + gkLsGG kqRvai+RAl+ +P +Ll+De  +aLD+++ k +   L+ + a+ k   + ++H l+ + r ad + v++ G+v   g+   +l+++
  MMETSP1137-20121227|4380_1 1289 LHVPSGQVVALCGPSGSGKSTIIALVERFYDPQEGSVMLDGVDV---R-TLNVSWLRQQIGLVGQEPMLFVG-TVAENIAYGKVEGCTQQ-EIEEAAtkanahsfIVENLpqQYQTQVGIRGGKLSGGQKQRVAIARALVRKPAVLLLDEATSALDNESEKIVQAALDDMMAKQKKTTITIAHRLSTI-RGADLIAVINRGKVVERGNHTSLLQQR 1497
                  6788889**********************************744...4.4899*****************86.8********87654443.23322211111112555552223445566779***************************************************************98.67**************99998887765 PP

>> TIGR00960  3a0501s02: type II secretory pathway family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.3   0.1   1.3e-28   7.6e-27       2     204 ..     522     729 ..     521     740 .. 0.80
   2 !   97.7   0.1   2.8e-30   1.7e-28       2     197 ..    1266    1466 ..    1265    1483 .. 0.79

  Alignments for each domain:
  == domain 1    score: 92.3 bits;  conditional E-value: 1.3e-28
   TIGR00960   2 ikfeqvskaykgaael.aldnvtvkiekGelvflvGhsGaGkstllklilgiekpsaGkirvsgqdltklrdrevpflrrqiGivfqdfkllsdrtvydnvalalriiGvkgreieervsaalekvGlkdk........akalPvqlsgGeqqrvaiaravvnkPallladePtgnlddelsrdilelleev.nraGttvlvathdenlvesk 204
                 i++++v  ay++a ++   ++ +++++ G++v l G+sG+Gkst+++l+     p +G +++ g d+ +l   +v+ lr+qiG+v q+   l   tv +n+a   +  G++ +eie  +++a  +  +kdk          +   +lsgG++qrvaiara v+ Pa+ l de t+ ld +  r + + l+++  ++  t +  +h  + + + 
  MMETSP1137-20121227|4380_1 522 IEVKDVYFAYPSAPDVqVCNGYSLHVPAGQVVALCGQSGSGKSTIINLVERFYDPHRGAVHFDGVDVRTL---NVSWLRQQIGLVGQEPV-LFVGTVAENIAYGKK-DGATQEEIEAAAEMANAHGFIKDKlpdgygtqVGQGGSKLSGGQKQRVAIARAXVRXPAVXLLDEATSALDTASERVVQKALDSLmAKRKRTTITIAHRLSTIRNA 729
                 6788899999998765156889********************************************9887...699***********975.56679******9865.799999999988888766656665221111114456789*************************************999999986334444555555666655544 PP

  == domain 2    score: 97.7 bits;  conditional E-value: 2.8e-30
   TIGR00960    2 ikfeqvskaykgaaelal.dnvtvkiekGelvflvGhsGaGkstllklilgiekpsaGkirvsgqdltklrdrevpflrrqiGivfqdfkllsdrtvydnvalalriiGvkgreieervsaalekvGl.kdkakalPv.......qlsgGeqqrvaiaravvnkPallladePtgnlddelsrdilelleev.nraGttvlvathd 197 
                  i++++v  ay++  + ++ ++ t++++ G++v l G+sG+Gkst++ l+     p++G +++ g d+ +l   +v+ lr+qiG+v q+  l    tv +n+a   ++ G + +eiee +++a  +  + ++  +++ +       +lsgG++qrvaiara+v+kPa+ll de t+ ld+e  + +   l+++  ++  t +  +h 
  MMETSP1137-20121227|4380_1 1266 IQLQDVVFAYPTRLDYTIcNGYTLHVPSGQVVALCGPSGSGKSTIIALVERFYDPQEGSVMLDGVDVRTL---NVSWLRQQIGLVGQEPML-FVGTVAENIAYG-KVEGCTQQEIEEAATKANAHSFIvENLPQQYQTqvgirggKLSGGQKQRVAIARALVRKPAVLLLDEATSALDNESEKIVQAALDDMmAKQKKTTITIAHR 1466
                  7889999999998876653789********************************************9887...699***********9765.5679******97.89********99998775543321222222221011122379********************************988877777776524444455544554 PP

>> TIGR03608  L_ocin_972_ABC: putative bacteriocin export ABC transporter, lactococcin 972 group
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.4   0.0   3.9e-28   2.3e-26      12     203 ..     538     732 ..     528     735 .. 0.81
   2 !   96.2   0.0   6.3e-30   3.8e-28      11     201 ..    1281    1474 ..    1268    1479 .. 0.78

  Alignments for each domain:
  == domain 1    score: 90.4 bits;  conditional E-value: 3.9e-28
   TIGR03608  12 eilkklslkiekGelvaivGesGsGKstlLnilgllekkdsgkvilegkekaklkskkaskllreklgylFqnfaLlenetveenlelalklkkkskkekekkkkevlekvgl.........ekklkkkiyelsgGekqRvalarillkeselilADEPtgsLDkknreevlellkel.keegktiiivtHdpevaekadrv 203
                 ++ +  sl++ +G++va++G+sGsGKst++n++ ++ ++++g v ++g + +    + + + lr+++g + q+  L    tv en+  + k     ++e+ ++  e+ ++ g+          ++  +   +lsgG+kqRva+ar+ ++ + + l DE t++LD+ ++ +v + l++l +++ +t i + H  +  ++ad++
  MMETSP1137-20121227|4380_1 538 QVCNGYSLHVPAGQVVALCGQSGSGKSTIINLVERFYDPHRGAVHFDGVDVR----TLNVSWLRQQIGLVGQEPVLF-VGTVAENIAYGKKDG--ATQEEIEAAAEMANAHGFikdklpdgyGTQVGQGGSKLSGGQKQRVAIARAXVRXPAVXLLDEATSALDTASERVVQKALDSLmAKRKRTTITIAHRLSTIRNADKI 732
                 788899********************************************44....5667899**********9887.679****99875543..3444555555555555442100011113344566789*******************************************9972577899********999999987 PP

  == domain 2    score: 96.2 bits;  conditional E-value: 6.3e-30
   TIGR03608   11 keilkklslkiekGelvaivGesGsGKstlLnilgllekkdsgkvilegkekaklkskkaskllreklgylFqnfaLlenetveenlelalklkkkskkekekkkkevlekv...glekklkkkiy....elsgGekqRvalarillkeselilADEPtgsLDkknreevlellkel.keegktiiivtHdpevaekad 201 
                   +i +   l++ +G++va++G sGsGKst++ ++ ++ ++++g+v+l+g + +    + + + lr+++g + q+  L    tv en+  + +   ++++ +e ++k   +++   +l ++ ++++     +lsgG+kqRva+ar+l++++ ++l DE t++LD++++++v + l+++ +++ kt i + H  +  + ad
  MMETSP1137-20121227|4380_1 1281 YTICNGYTLHVPSGQVVALCGPSGSGKSTIIALVERFYDPQEGSVMLDGVDVR----TLNVSWLRQQIGLVGQEPMLF-VGTVAENIAYGKVEGCTQQEIEEAATKANAHSFiveNLPQQYQTQVGirggKLSGGQKQRVAIARALVRKPAVLLLDEATSALDNESEKIVQAALDDMmAKQKKTTITIAHRLSTIRGAD 1474
                  4789999********************************************44....5667899**********8877.689*****99866544333322222222222221124533334433222448*******************************************98626788999*****988777666 PP

>> TIGR01188  drrA: daunorubicin resistance ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.1   0.5     9e-27   5.4e-25       7     217 ..     538     754 ..     533     856 .. 0.79
   2 !  102.6   0.2   8.4e-32   5.1e-30      10     212 ..    1285    1494 ..    1280    1507 .. 0.84

  Alignments for each domain:
  == domain 1    score: 86.1 bits;  conditional E-value: 9e-27
   TIGR01188   7 kAvdgvnlkveegevfglLGPnGAGKtttikmLttllkPdsGtarvaGyDv.vrepdevRrsigvvpqkasvdedLtarenlellgelyglpkkeaeeraeellelv.....elkeaadkkvkt....ysgGmrrrlelaasliaqPevlfLDEPtiGLDprtrraiwdlieelkke.gvtilltthyleeadkladrvaiidkGkiiaedtpeeLKervgk 217
                 +  +g +l+v++g+v++l G  G GK+t+i+++     P  G +   G Dv + + + +R++ig+v+q+  +    t  en+  +g+  g  ++e+e+ ae + +       +l +    +v++    +sgG+++r+ +a++ +  P+v  LDE t+ LD+ + r++ + +++l  + + t++  +h l  +   ad++a+++kG+++  +t ++L + +g+
  MMETSP1137-20121227|4380_1 538 QVCNGYSLHVPAGQVVALCGQSGSGKSTIINLVERFYDPHRGAVHFDGVDVrTLNVSWLRQQIGLVGQEPVLFVG-TVAENIA-YGKKDGATQEEIEAAAE-MANAHgfikdKLPDGYGTQVGQggskLSGGQKQRVAIARAXVRXPAVXLLDEATSALDTASERVVQKALDSLMAKrKRTTITIAHRLSTIR-NADKIAVVHKGQVVESGTYDKLLA-IGQ 754
                 5667889********************************************5568899***********999876.6778886.57777777777766443.433330011135555566776433449********************************************98877999999*****9986.59*****************99985.333 PP

  == domain 2    score: 102.6 bits;  conditional E-value: 8.4e-32
   TIGR01188   10 dgvnlkveegevfglLGPnGAGKtttikmLttllkPdsGtarvaGyDv.vrepdevRrsigvvpqkasvdedLtarenlellgelyglpkkeaeeraee......llelvelkeaadkkv..ktysgGmrrrlelaasliaqPevlfLDEPtiGLDprtrraiwdlieelkke.gvtilltthyleeadkladrvaiidkGkiiaedtpeeLK 212 
                  +g +l+v+ g+v++l GP G GK+t+i ++     P++G++++ G Dv + + + +R++ig+v+q+  +    t  en+  +g++ g  ++e+ee a++      ++e +  +++++  +  +++sgG+++r+ +a++l+ +P+vl LDE t+ LD ++ +++   ++++  + ++t++  +h l  +   ad +a+i++Gk++  +    L 
  MMETSP1137-20121227|4380_1 1285 NGYTLHVPSGQVVALCGPSGSGKSTIIALVERFYDPQEGSVMLDGVDVrTLNVSWLRQQIGLVGQEPMLFVG-TVAENIA-YGKVEGCTQQEIEEAATKanahsfIVENLPQQYQTQVGIrgGKLSGGQKQRVAIARALVRKPAVLLLDEATSALDNESEKIVQAALDDMMAKqKKTTITIAHRLSTIR-GADLIAVINRGKVVERGNHTSLL 1494
                  57789*******************************************5568899************99977.6678876.79999999998887765522222245555545544443322589******************************************99887769999999****9885.69*************99887775 PP

>> TIGR02211  LolD_lipo_ex: lipoprotein releasing system, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.8   0.0   2.1e-26   1.2e-24      16     220 ..     535     741 ..     522     742 .. 0.83
   2 ?    3.1   0.0      0.21        13     127     191 ..     811     872 ..     798     884 .. 0.76
   3 !   93.3   0.0   5.5e-29   3.3e-27      15     220 ..    1278    1485 ..    1266    1486 .. 0.86

  Alignments for each domain:
  == domain 1    score: 84.8 bits;  conditional E-value: 2.1e-26
   TIGR02211  16 leievlkgvsleiekgelvaivGssGsGkstllhllggldkptsGevllkGkelsklssneraklrnkklGfiyqfhhlladftalenvamPlliskk..skkeakerake..lle.kv..glekrinkkpselsGGerqrvaiaralvnkPklvladePtgnldkktakkifelllelnkekntallvvthdlelakkldrvlelkdgkla 220
                  +++v +g sl++ +g++va+ G+sGsGkst++ l+  + +p  G v ++G ++++l+    + lr +++G++ q   l+   t+ en+a     + +  +++ a+e+a++  +++ k+  g   ++ +  s+lsGG++qrvaiara v  P++ l de t+ ld+++ + + + l  l  +++ + + ++h l+ ++++d+   +++g+++
  MMETSP1137-20121227|4380_1 535 PDVQVCNGYSLHVPAGQVVALCGQSGSGKSTIINLVERFYDPHRGAVHFDGVDVRTLN---VSWLR-QQIGLVGQEPVLFV-GTVAENIAYGKKDGATqeEIEAAAEMANAhgFIKdKLpdGYGTQVGQGGSKLSGGQKQRVAIARAXVRXPAVXLLDEATSALDTASERVVQKALDSLMAKRKRTTITIAHRLSTIRNADKIAVVHKGQVV 741
                 5799***************************************************997...56788.679*****877766.5999****98765433002333333332211333122334567888999************************************************************************999999986 PP

  == domain 2    score: 3.1 bits;  conditional E-value: 0.21
   TIGR02211 127 ekvglekrinkkpselsGGerqrvaiaralvnkPklvladePtgnldkktakkifelllelnkek 191
                 ekv   kr++++ ++ +   r   a ara+v++ + v++ +  g+  +   +++f +l++lnk +
  MMETSP1137-20121227|4380_1 811 EKVTTMKRLDEENGDAA-ERRSDKAAARAVVDDDDTVVTKDTNGKKKR--DTSFFGVLKRLNKLQ 872
                 56666677777766644.34667799*************998887555..557899999999865 PP

  == domain 3    score: 93.3 bits;  conditional E-value: 5.5e-29
   TIGR02211   15 kleievlkgvsleiekgelvaivGssGsGkstllhllggldkptsGevllkGkelsklssneraklrnkklGfiyqfhhlladftalenvamPll..iskkskkeakerake...llekv..glekrinkkpselsGGerqrvaiaralvnkPklvladePtgnldkktakkifelllelnkekntallvvthdlelakkldrvlelkdgkla 220 
                  +l++++ +g  l++ +g++va+ G sGsGkst++ l+  + +p +G+v+l+G ++++l+    + lr +++G++ q   l+   t+ en+a   +   ++++++ea+++a++   ++e++  + + ++  + ++lsGG++qrvaiaralv kP+++l de t+ ld+++ k++   l ++  +++ + + ++h l+ ++ +d    ++ gk++
  MMETSP1137-20121227|4380_1 1278 RLDYTICNGYTLHVPSGQVVALCGPSGSGKSTIIALVERFYDPQEGSVMLDGVDVRTLN---VSWLR-QQIGLVGQEPMLFV-GTVAENIAYGKVegCTQQEIEEAATKANAhsfIVENLpqQYQTQVGIRGGKLSGGQKQRVAIARALVRKPAVLLLDEATSALDNESEKIVQAALDDMMAKQKKTTITIAHRLSTIRGADLIAVINRGKVV 1485
                  5789999*************************************************997...56788.679*****877666.5999****99883345677778777765422345554324567788899****************************************************************99999999999888875 PP

>> TIGR03873  F420-0_ABC_ATP: proposed F420-0 ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.3   0.3   6.8e-27   4.1e-25      14     225 ..     537     750 ..     530     759 .. 0.83
   2 !   96.9   0.2   4.1e-30   2.5e-28      15     226 ..    1282    1495 ..    1274    1500 .. 0.84

  Alignments for each domain:
  == domain 1    score: 86.3 bits;  conditional E-value: 6.8e-27
   TIGR03873  14 rlivddvdvtaPaGaltgllGPnGsGkstllrllaGllapdaGevdlagadlkalsrrararrvalveqdsdaevplsvrdvvalGriPhrslfaadsd....edaevvdralarvelssladrdlstlsGGerqrvhlaralaqePklllldePtnhldvsaqlellalvrelaae.gvtvvvalhdlnlaasvcdhvvvldgGrvvaaGppaevl 225
                 + + ++  + +PaG++ +l G  GsGkst+++l+     p++G+v+++g+d+++l+     +++ lv q+    v  +v + +a G+    ++   +++    + ++ ++  l +   +++  +  s lsGG++qrv +ara  + P + llde t  ld ++   + +++ +l+a+ + t++   h l+  ++ +d++ v+++G+vv +G+  ++l
  MMETSP1137-20121227|4380_1 537 VQVCNGYSLHVPAGQVVALCGQSGSGKSTIINLVERFYDPHRGAVHFDGVDVRTLNVSWLRQQIGLVGQEPVLFV-GTVAENIAYGKKDGATQEEIEAAaemaNAHGFIKDKLPDGYGTQV-GQGGSKLSGGQKQRVAIARAXVRXPAVXLLDEATSALDTASERVVQKALDSLMAKrKRTTITIAHRLST-IRNADKIAVVHKGQVVESGTYDKLL 750
                 6788899999***********************************************************987665.589999999998766665555550000555555555555444444.456789***********************************9999999998875516688888899985.7899***************998877 PP

  == domain 2    score: 96.9 bits;  conditional E-value: 4.1e-30
   TIGR03873   15 livddvdvtaPaGaltgllGPnGsGkstllrllaGllapdaGevdlagadlkalsrrararrvalveqdsdaevplsvrdvvalGriPhrslfaadsdedaevvdrala....rvelssladrdlstlsGGerqrvhlaralaqePklllldePtnhldvsaqlellalvrela.aegvtvvvalhdlnlaasvcdhvvvldgGrvvaaGppaevlt 226 
                  +i ++ ++ +P+G++ +l GP GsGkst++ l+     p++G+v l+g+d+++l+     +++ lv q+    v  +v + +a G++   ++   + ++ ++ ++  +     +   +++  r    lsGG++qrv +aral ++P +lllde t  ld ++   + a++ +++ +++ t++   h l+  ++ +d + v++ G+vv  G+ +++l 
  MMETSP1137-20121227|4380_1 1282 TICNGYTLHVPSGQVVALCGPSGSGKSTIIALVERFYDPQEGSVMLDGVDVRTLNVSWLRQQIGLVGQEPMLFVG-TVAENIAYGKVEGCTQQEIEEAATKANAHSFIVenlpQQYQTQVGIRG-GKLSGGQKQRVAIARALVRKPAVLLLDEATSALDNESEKIVQAALDDMMaKQKKTTITIAHRLST-IRGADLIAVINRGKVVERGNHTSLLQ 1495
                  6889999*************************************************************9877665.89999*****98877776666665555555554000045555555554.57**********************************99999999998762566788888899985.7899***************9988876 PP

>> TIGR03410  urea_trans_UrtE: urea ABC transporter, ATP-binding protein UrtE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.6   0.1   5.8e-27   3.5e-25       3     218 ..     524     748 ..     522     752 .. 0.82
   2 !   95.2   0.9   1.4e-29   8.4e-28      14     220 ..    1282    1494 ..    1266    1500 .. 0.84

  Alignments for each domain:
  == domain 1    score: 86.6 bits;  conditional E-value: 5.8e-27
   TIGR03410   3 venlevaYges...evlrdvslevekgevvavlGrngvGkttllkalvgllkvksGeielegeditklkpeervkaGiayvpqGreifpkltveenlelglealkkk.ekkipeeiyelFPvlke.......mlkRrgG.dLsGGqqqqlaiaRaLvtePklllLDePteGiqPsiikeiekvikelakekdlaillveqvldfaleladrylvlerGevvaegekee 218
                 v+++  aY ++   +v ++ sl+v++g+vva+ G+ g Gk+t++  +   ++ ++G+++++g d+++l+ +   ++ i+ v q   +f   tv+en+  g +  +++ e +  +e+ +    +k+        +  +gG +LsGGq+q +aiaRa v  P + lLDe t  +  +  + ++k++++l ++++ + + + + l+  ++ ad+++v+++G+vv++g+ ++
  MMETSP1137-20121227|4380_1 524 VKDVYFAYPSApdvQVCNGYSLHVPAGQVVALCGQSGSGKSTIINLVERFYDPHRGAVHFDGVDVRTLNVS-WLRQQIGLVGQEPVLFV-GTVAENIAYGKKDGATQeEIEAAAEMANAHGFIKDklpdgygTQVGQGGsKLSGGQKQRVAIARAXVRXPAVXLLDEATSALDTASERVVQKALDSLMAKRKRTTITIAHRLSTIRN-ADKIAVVHKGQVVESGTYDK 748
                 666666665432228999***********************************************999865.57889******887776.59********98766543444455555555555541111111455555537*************************************************9999999999**98887.***************98876 PP

  == domain 2    score: 95.2 bits;  conditional E-value: 1.4e-29
   TIGR03410   14 evlrdvslevekgevvavlGrngvGkttllkalvgllkvksGeielegeditklkpeervkaGiayvpqGreifpkltveenlelglea.lkkk.......ekkipeeiyelFPvlkem.lkRrgGdLsGGqqqqlaiaRaLvtePklllLDePteGiqPsiikeiekvikelakekdlaillveqvldfaleladrylvlerGevvaegekeeld 220 
                  ++ ++ +l+v++g+vva+ G  g Gk+t++  +   ++ ++G+++l+g d+++l+ +   ++ i+ v q  ++f   tv+en+  g  + ++++       + + +  i e  P   +     rgG+LsGGq+q +aiaRaLv +P +llLDe t  +     k ++++++++ ++++ + + + + l+  +  ad ++v++rG+vv++g++++l 
  MMETSP1137-20121227|4380_1 1282 TICNGYTLHVPSGQVVALCGPSGSGKSTIIALVERFYDPQEGSVMLDGVDVRTLNVS-WLRQQIGLVGQEPMLFVG-TVAENIAYGKVEgCTQQeieeaatKANAHSFIVENLPQQYQTqVGIRGGKLSGGQKQRVAIARALVRKPAVLLLDEATSALDNESEKIVQAALDDMMAKQKKTTITIAHRLSTIRG-ADLIAVINRGKVVERGNHTSLL 1494
                  6888999********************************************999865.67899*******999976.9*****9985331222234444445556677888889765541578*************************************************999999999999999997766.****************988764 PP

>> TIGR03258  PhnT: 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.0   0.2   1.1e-27   6.6e-26      22     227 ..     538     749 ..     516     758 .. 0.83
   2 !   90.8   0.2   3.1e-28   1.9e-26       5     230 ..    1262    1496 ..    1258    1501 .. 0.82

  Alignments for each domain:
  == domain 1    score: 89.0 bits;  conditional E-value: 1.1e-27
   TIGR03258  22 vvlddlsleieaGellallGksGsGkttllravaGfvkadGGrllvadrdlthlp..pykrnlallvqnyalfphlkveenvafGlra.rkqskaliaervadalklv..qlsd.aaarl...paqlsGGqqqrvalaralvvrpdvllldeplsaldaqlrasvveelkalhrelpeltvlyvthdrdealvladkillmkeGslialGetral 227
                  v +  sl++ aG+++al G+sGsGk+t++ +v  f  +  G +   + d+  l     +++++l+ q+  lf   +v en+a+G +    q + + a  +a+a   +  +l d +++++    ++lsGGq+qrva+ara v  p v llde  sald+     v++ l +l  +    t+  ++h r  ++  adki ++++G++++ G+  +l
  MMETSP1137-20121227|4380_1 538 QVCNGYSLHVPAGQVVALCGQSGSGKSTIINLVERFYDPHRGAVHFDGVDVRTLNvsWLRQQIGLVGQEPVLFVG-TVAENIAYGKKDgATQEEIEAAAEMANAHGFIkdKLPDgYGTQVgqgGSKLSGGQKQRVAIARAXVRXPAVXLLDEATSALDTASERVVQKALDSLMAKRKRTTI-TIAH-RLSTIRNADKIAVVHKGQVVESGTYDKL 749
                 477889*********************************************87641156889***********75.9********98524566677777888886655224655466665222579**********************************************999877665.6677.678899*****************98777 PP

  == domain 2    score: 90.8 bits;  conditional E-value: 3.1e-28
   TIGR03258    5 atsGvvleslrvaygar...vvlddlsleieaGellallGksGsGkttllravaGfvkadGGrllvadrdlthlp..pykrnlallvqnyalfphlkveenvafGlrarkqskaliaervadalkl.vqlsdaaarlpaq.......lsGGqqqrvalaralvvrpdvllldeplsaldaqlrasvveelkalhrelpeltvlyvthdrdealvladkillmkeGslialGetralyda 230 
                  +++ ++l+++  ay +r   ++ +  +l++ +G+++al G+sGsGk+t++ +v  f  ++ G +++ + d+  l     +++++l+ q+  lf   +v en+a+G   +  ++ +i+e  ++a      + +  +++ +q       lsGGq+qrva+aralv +p vlllde  sald +  + v+  l  +  +  + t+  ++h r  ++  ad i +++ G++++ G+  +l ++
  MMETSP1137-20121227|4380_1 1262 CAGDIQLQDVVFAYPTRldyTICNGYTLHVPSGQVVALCGPSGSGKSTIIALVERFYDPQEGSVMLDGVDVRTLNvsWLRQQIGLVGQEPMLFVG-TVAENIAYGK-VEGCTQQEIEEAATKANAHsFIVENLPQQYQTQvgirggkLSGGQKQRVAIARALVRKPAVLLLDEATSALDNESEKIVQAALDDMMAKQKKTTI-TIAH-RLSTIRGADLIAVINRGKVVERGNHTSLLQQ 1496
                  4566999999999988755578999**********************************************87641156889***********75.9********5.55666667777776665431333444455544433333339****************************************9*999998877665.5677.6788999****************99998875 PP

>> TIGR02770  nickel_nikD: nickel import ATP-binding protein NikD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.4   0.0   1.1e-25   6.5e-24       4     214 ..     542     750 ..     539     762 .. 0.87
   2 !   92.7   0.2   7.7e-29   4.6e-27       6     215 ..    1288    1495 ..    1283    1499 .. 0.88

  Alignments for each domain:
  == domain 1    score: 82.4 bits;  conditional E-value: 1.1e-25
   TIGR02770   4 dvnlslkrgkvlalvGesGsGksltalailglldkeltktsGeilldgkelaal..alrgreialilqnPrsafnPlltikeqlletlkaleklskqakelivealeavgLeeae.evlkkypfelsGGmlqRvmialallleaplliaDePttdlDvvvqaevLklleelrekrglgillithDlgvvaeladevavmekGkivergtvkelf 214
                 + +l++  g+v+al G+sGsGks+    +  + d      +G + +dg ++ +l  +   ++i+l+ q+P+  +  +       +    ++e++++ a+   ++ + +  L+++  + + +   +lsGG  qRv ia a +  +++ + De t++lD +++  v k l++l+ kr  + + i+h l+ + + ad++av++kG++ve+gt ++l+
  MMETSP1137-20121227|4380_1 542 GYSLHVPAGQVVALCGQSGSGKSTIINLVERFYD----PHRGAVHFDGVDVRTLnvSWLRQQIGLVGQEPVLFVGTVAENIAYGKKDGATQEEIEAAAEMANAHGFIKDKLPDGYgTQVGQGGSKLSGGQKQRVAIARAXVRXPAVXLLDEATSALDTASERVVQKALDSLMAKRKRTTITIAHRLSTI-RNADKIAVVHKGQVVESGTYDKLL 750
                 5689999****************87777777776....679*********998855667899*********99888875555555555667778888888889999999**9975255778899***************************************************************99.67****************999886 PP

  == domain 2    score: 92.7 bits;  conditional E-value: 7.7e-29
   TIGR02770    6 nlslkrgkvlalvGesGsGksltalailglldkeltktsGeilldgkelaal..alrgreialilqnPrsafnPll.tikeqlletlkaleklskqakelivealeavgLeea.eevlkkypfelsGGmlqRvmialallleaplliaDePttdlDvvvqaevLklleelrekrglgillithDlgvvaeladevavmekGkivergtvkelfq 215 
                   l++  g+v+al G sGsGks+  + +  + d      +G+++ldg ++ +l  +   ++i+l+ q+P+  +  +  +i+   +e + ++e +++ a++  ++++   +L+++ ++ +     +lsGG  qRv ia al+ ++++l+ De t++lD  +++ v   l++++ k+  + + i+h l+ + + ad +av+++Gk+verg+ ++l+q
  MMETSP1137-20121227|4380_1 1288 TLHVPSGQVVALCGPSGSGKSTIIALVERFYD----PQEGSVMLDGVDVRTLnvSWLRQQIGLVGQEPMLFVGTVAeNIAYGKVEGCTQQE-IEEAATKANAHSFIVENLPQQyQTQVGIRGGKLSGGQKQRVAIARALVRKPAVLLLDEATSALDNESEKIVQAALDDMMAKQKKTTITIAHRLSTI-RGADLIAVINRGKVVERGNHTSLLQ 1495
                  688999***************98887778887....568*********998855667899*********99988853899999***98876.5666777888888889998761556788999***************************************************************98.78****************9998887 PP

>> TIGR01166  cbiO: cobalt ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.6   0.1   1.7e-25   1.1e-23       4     179 ..     536     714 ..     531     724 .. 0.83
   2 !   87.8   0.1   2.2e-27   1.3e-25       8     182 ..    1284    1462 ..    1279    1469 .. 0.82

  Alignments for each domain:
  == domain 1    score: 81.6 bits;  conditional E-value: 1.7e-25
   TIGR01166   4 eaevlkglnlavergevlallGanGaGkstlllhlnGllrPksGkvlldGeeldysrkgllelrkkvalvlqdpddqlfaadvdedvafgplnlGlseaeverrvreala..avdi...sgleerp...thllsgGekkrvaiagavalrpdvllldePtagldpaGaeqlleilrklreeGkt 179
                 +++v +g +l+v  g+v+al G+ G+Gkst+++ ++    P+ G+v +dG ++     ++  lr++++lv q+p   lf  +v e++a+g ++ G +++e+e+  + a a   ++    +g+  +     ++lsgG+k+rvaia a +  p v llde t+ ld+a ++ + ++l+ l ++ k 
  MMETSP1137-20121227|4380_1 536 DVQVCNGYSLHVPAGQVVALCGQSGSGKSTIINLVERFYDPHRGAVHFDGVDVR--TLNVSWLRQQIGLVGQEP--VLFVGTVAENIAYGKKD-GATQEEIEAAAEMANAhgFIKDklpDGYGTQVgqgGSKLSGGQKQRVAIARAXVRXPAVXLLDEATSALDTASERVVQKALDSLMAKRKR 714
                 567899********************************************7765..5677889*********99..6*************987.88888888776655441144321224676665111579*********************************************9987553 PP

  == domain 2    score: 87.8 bits;  conditional E-value: 2.2e-27
   TIGR01166    8 lkglnlavergevlallGanGaGkstlllhlnGllrPksGkvlldGeeldysrkgllelrkkvalvlqdpddqlfaadvdedvafgplnlGlseaeverrvrealaa.vdi....sgleerpt...hllsgGekkrvaiagavalrpdvllldePtagldpaGaeqlleilrklreeGk.tvvi 182 
                   +g  l+v  g+v+al G+ G+Gkst++  ++    P++G v+ldG ++     ++  lr++++lv q+p   lf  +v e++a+g +  G +++e+e+   +a a    +    ++++ +      +lsgG+k+rvaia a++ +p vlllde t+ ld + ++ + ++l+ + ++ k t + 
  MMETSP1137-20121227|4380_1 1284 CNGYTLHVPSGQVVALCGPSGSGKSTIIALVERFYDPQEGSVMLDGVDVR--TLNVSWLRQQIGLVGQEP--MLFVGTVAENIAYGKVE-GCTQQEIEEAATKANAHsFIVenlpQQYQTQVGirgGKLSGGQKQRVAIARALVRKPAVLLLDEATSALDNESEKIVQAALDDMMAKQKkTTIT 1462
                  577889****************************************7765..5677889*********99..6*************997.99999999988887654133311223455544222247*******************************************9988765414444 PP

>> TIGR02769  nickel_nikE: nickel import ATP-binding protein NikE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.8   0.2     3e-27   1.8e-25      25     235 ..     538     746 ..     532     756 .. 0.84
   2 !   82.8   0.2   9.4e-26   5.7e-24      25     239 ..    1282    1494 ..    1271    1500 .. 0.82

  Alignments for each domain:
  == domain 1    score: 87.8 bits;  conditional E-value: 3e-27
   TIGR02769  25 avldnvslsleeGetvallGrsGaGkstlarlllGlekPakGevsfrGqdlakldrkqrkafrrdvqlvfqdsisavnprksvreiigePlr...hltsldeserkariaellelvelrs...evldklPrqlsGGqlqriniaralavePklivldeavsnldlvlqasilellkklkqefGlaylfithdlrlvqkfaqrvlvldeGqiveeikv 235
                 +v ++ sl++ +G+ val G+sG+Gkst+  l+  +  P +G v+f G+d+  l+ +    +r+++ lv q+ +  v    +v e i+   +     ++++++++ a ++ +++  +l++    ++ +  ++lsGGq qr++iara    P + +ldea s ld     ++ + l  l ++   + + i+h l+ +++ a++++v+++Gq+ve  + 
  MMETSP1137-20121227|4380_1 538 QVCNGYSLHVPAGQVVALCGQSGSGKSTIINLVERFYDPHRGAVHFDGVDVRTLNVS---WLRQQIGLVGQEPVLFVG---TVAENIAYGKKdgaTQEEIEAAAEMANAHGFIKD-KLPDgygTQVGQGGSKLSGGQKQRVAIARAXVRXPAVXLLDEATSALDTASERVVQKALDSLMAKRKRTTITIAHRLSTIRN-ADKIAVVHKGQVVESGTY 746
                 799999************************************************976...57899******9877665...4444444444311155677777777777777764.3444111567777899**************************************************************9975.9*************8655 PP

  == domain 2    score: 82.8 bits;  conditional E-value: 9.4e-26
   TIGR02769   25 avldnvslsleeGetvallGrsGaGkstlarlllGlekPakGevsfrGqdlakldrkqrkafrrdvqlvfqdsisavnprksvreiigePlrhl..tsldeserkariaellelvelrse...vldklPrqlsGGqlqriniaralavePklivldeavsnldlvlqasilellkklkqefGlaylfithdlrlvqkfaqrvlvldeGqiveeikvaell 239 
                  ++ ++  l++ +G+ val G sG+Gkst+  l+  +  P++G+v+  G+d+  l+ +    +r+++ lv q+ +  v +   +++i    ++    ++++e++ ka ++ ++ + +l+++   ++  +  +lsGGq qr++iaral  +P +++ldea s ld      + + l ++ ++   + + i+h l+ ++  a+ ++v+++G++ve+ + ++ll
  MMETSP1137-20121227|4380_1 1282 TICNGYTLHVPSGQVVALCGPSGSGKSTIIALVERFYDPQEGSVMLDGVDVRTLNVS---WLRQQIGLVGQEPMLFVGT--VAENIAYGKVEGCtqQEIEEAATKANAHSFIVE-NLPQQyqtQVGIRGGKLSGGQKQRVAIARALVRKPAVLLLDEATSALDNESEKIVQAALDDMMAKQKKTTITIAHRLSTIR-GADLIAVINRGKVVERGNHTSLL 1494
                  5667788999********************************************976...5789********9876653..333444444444300457777777777665533.4444400145567889**************************************************************986.59*************98887765 PP

>> TIGR03005  ectoine_ehuA: ectoine/hydroxyectoine ABC transporter, ATP-binding protein EhuA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.4   0.1   6.9e-24   4.2e-22      13     239 ..     537     754 ..     530     764 .. 0.80
   2 !   88.5   0.1   1.4e-27   8.7e-26      13     236 ..    1281    1495 ..    1266    1498 .. 0.82

  Alignments for each domain:
  == domain 1    score: 76.4 bits;  conditional E-value: 6.9e-24
   TIGR03005  13 ltvldglelevaaGekvaliGpsGsGkstilrilmtletideGsikvegeqlyhmkgrkGklvpadekhlrkvrekiGmvfqsfnlfphktvldnvteapvl...vkGvaraeaekravelld.mv..GladkadalpaqlsGGqkqrvaiaralalrpkvllfdevtsaldpelveevlnvlrrlasetdltmllvthemgfarefadrvlffdkGkiveeGkpdeifrkpk 239
                 ++v +g +l+v aG+ val G sGsGksti+ ++  +   + G ++ +g  +                 +  +r++iG+v q+  lf   tv +n++           ++ a+  + a  +++  +  G + +  +  ++lsGGqkqrvaiara    p v l+de+tsald      v + l  l ++++ t + ++h++   r+ ad++   +kG++ve G  d+++   +
  MMETSP1137-20121227|4380_1 537 VQVCNGYSLHVPAGQVVALCGQSGSGKSTIINLVERFYDPHRGAVHFDGVDVR-------------TLNVSWLRQQIGLVGQEPVLFV-GTVAENIAYGKKDgatQEEIEAAAEMANAHGFIKdKLpdGYGTQVGQGGSKLSGGQKQRVAIARAXVRXPAVXLLDEATSALDTASERVVQKALDSLMAKRKRTTITIAHRLSTIRN-ADKIAVVHKGQVVESGTYDKLLAIGQ 754
                 67899*************************99876666666666665544333.............3457899**************7.5899**987654300023333333334444443312133777778888899*********************************99999999*********************9997.9****************999987655 PP

  == domain 2    score: 88.5 bits;  conditional E-value: 1.4e-27
   TIGR03005   13 ltvldglelevaaGekvaliGpsGsGkstilrilmtletideGsikvegeqlyhmkgrkGklvpadekhlrkvrekiGmvfqsfnlfphktvldnvteapvl...vkGvaraeaekravell.dmv..GladkadalpaqlsGGqkqrvaiaralalrpkvllfdevtsaldpelveevlnvlrrlasetdltmllvthemgfarefadrvlffdkGkiveeGkpdeifr 236 
                  +t+ +g  l+v +G+ val GpsGsGksti+ ++  +   +eGs+ ++g  +  ++             +  +r++iG+v q+  lf   tv +n++   v     + ++ a++++ a  ++ + +      +      +lsGGqkqrvaiaral  +p vll+de+tsald e  + v + l ++ ++++ t + ++h++   r  ad +   ++Gk+ve+G+   +++
  MMETSP1137-20121227|4380_1 1281 YTICNGYTLHVPSGQVVALCGPSGSGKSTIIALVERFYDPQEGSVMLDGVDVRTLN-------------VSWLRQQIGLVGQEPMLFV-GTVAENIAYGKVEgctQQEIEEAATKANAHSFIvENLpqQYQTQVGIRGGKLSGGQKQRVAIARALVRKPAVLLLDEATSALDNESEKIVQAALDDMMAKQKKTTITIAHRLSTIRG-ADLIAVINRGKVVERGNHTSLLQ 1495
                  68999******************************************886655444.............7889**************7.5899***98876411134455555555554433122200122333445679**************************************************************9986.9***************9888776 PP

>> TIGR01184  ntrCD: nitrate ABC transporter, ATP-binding proteins C and D
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.0   0.0   1.6e-21   9.5e-20       4     192 ..     543     739 ..     540     749 .. 0.78
   2 !   75.5   0.2   1.6e-23   9.6e-22       5     176 ..    1288    1468 ..    1284    1494 .. 0.76

  Alignments for each domain:
  == domain 1    score: 69.0 bits;  conditional E-value: 1.6e-21
   TIGR01184   4 vdleikkgefislighsgcgkstllnliaglekptsgavilegkeitepgp....drmvvfqnysllpwltvrenialavdavlrdlskserre......iveehielvglreaadkrpeqlsggmkqrvaiaralsirpklllldepfgaldaltreelqekllkiveearvtvlmvthdvdealllsdrvvmltngp 192
                  +l++  g+ ++l g sg gkst++nl+  +  p  gav+++g ++         +++ +  +  +l   tv enia   +   ++ + +   e       +++++   g  +   +  ++lsgg kqrvaiara    p + llde   ald+ +   +q+ l  ++ +++ t++ ++h +  ++  +d++ ++ +g 
  MMETSP1137-20121227|4380_1 543 YSLHVPAGQVVALCGQSGSGKSTIINLVERFYDPHRGAVHFDGVDVRTLNVswlrQQIGLVGQEPVLFVGTVAENIAYGKKDGATQEEIEAAAEmanahgFIKDKLP-DGYGTQVGQGGSKLSGGQKQRVAIARAXVRXPAVXLLDEATSALDTASERVVQKALDSLMAKRKRTTITIAHRLS-TIRNADKIAVVHKGQ 739
                 579999*************************************9998765411113444444556666789******987665555444444440000004555543.3556666777889***********************************************************986.567788888877775 PP

  == domain 2    score: 75.5 bits;  conditional E-value: 1.6e-23
   TIGR01184    5 dleikkgefislighsgcgkstllnliaglekptsgavilegkeitepgp....drmvvfqnysllpwltvrenialavdavlrdlskserreiveehielv.gl....reaadkrpeqlsggmkqrvaiaralsirpklllldepfgaldaltreelqekllkiveearvtvlmvthdvd 176 
                   l++  g+ ++l g sg gkst++ l+  +  p +g+v+l+g ++         +++ +  +  +l   tv enia    +  ++++ +e  +  + h  +v +l    ++    r ++lsgg kqrvaiaral  +p +lllde   ald  + + +q  l +++ +++ t++ ++h + 
  MMETSP1137-20121227|4380_1 1288 TLHVPSGQVVALCGPSGSGKSTIIALVERFYDPQEGSVMLDGVDVRTLNVswlrQQIGLVGQEPMLFVGTVAENIAYGKVEGCTQQEIEEAATKANAHSFIVeNLpqqyQTQVGIRGGKLSGGQKQRVAIARALVRKPAVLLLDEATSALDNESEKIVQAALDDMMAKQKKTTITIAHRLS 1468
                  68999*************************************9998765411113444455556777899*****9875444444444444444444444431451111333445678************************************************************875 PP

>> TIGR01271  CFTR_protein: cystic fibrosis transmembrane conductor regulator (CFTR)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.1   0.0   1.3e-22   7.8e-21    1215    1439 ..     519     750 ..     510     755 .. 0.90
   2 !   69.7   0.0   3.4e-22   2.1e-20    1215    1441 ..    1263    1496 ..    1228    1508 .. 0.87

  Alignments for each domain:
  == domain 1    score: 71.1 bits;  conditional E-value: 1.3e-22
   TIGR01271 1215 ggqmtvkdltakyteagr.avlqdlsfsveagqrvgllgrtgsgkstllsallrlls.tegeiqidgvswnsvtlqkwrkafgvipqkvfilsgtfrknldp..yeqysdeeiwkvaeevglksvi.eqfpdkldfvlvdggyvlsnghkqlmclarsilskakillldepsafldpvtlqiirktlkqafsn..ctvilsehrveallecqqflviegssvkqydsiqkll 1439
                   g+++vkd+   y +a    v +  s+ v agq v l g++gsgkst++  + r+ +   g ++ dgv   ++ +   r+ +g++ q   ++ gt   n+     +  ++eei   ae    +  i +++pd    ++ +gg  ls g kq + +ar+ +    + llde ++ ld  + ++++k+l   +++   t i   hr+ ++ + +++ v+ + +v +  + +kll
  MMETSP1137-20121227|4380_1  519 RGEIEVKDVYFAYPSAPDvQVCNGYSLHVPAGQVVALCGQSGSGKSTIINLVERFYDpHRGAVHFDGVDVRTLNVSWLRQQIGLVGQEPVLFVGTVAENIAYgkKDGATQEEIEAAAEMANAHGFIkDKLPDGYGTQVGQGGSKLSGGQKQRVAIARAXVRXPAVXLLDEATSALDTASERVVQKALDSLMAKrkRTTITIAHRLSTIRNADKIAVVHKGQVVESGTYDKLL 750 
                  689999**9999999865268999******************************997357***************************************9751144568899999999999999883589*********************************************************99887522799*******************999998888888887 PP

  == domain 2    score: 69.7 bits;  conditional E-value: 3.4e-22
   TIGR01271 1215 ggqmtvkdltaky.teagravlqdlsfsveagqrvgllgrtgsgkstllsallrlls.tegeiqidgvswnsvtlqkwrkafgvipqkvfilsgtfrknld..pyeqysdeeiwkvaeevglks.vieqfpdkldfvlvdggyvlsnghkqlmclarsilskakillldepsafldpvtlqiirktlkqafsn..ctvilsehrveallecqqflviegssvkqydsiqkllne 1441
                   g+++++d+   y t    ++ +  ++ v +gq v l g +gsgkst+++ + r+ +  eg + +dgv   ++ +   r+ +g++ q  +++ gt   n+     e  +++ei   a +   +s ++e++p++ + ++   g  ls g kq + +ar+++ k  +lllde ++ ld  + +i++ +l + +++   t i   hr+ ++   + + vi+  +v +      ll++
  MMETSP1137-20121227|4380_1 1263 AGDIQLQDVVFAYpTRLDYTICNGYTLHVPSGQVVALCGPSGSGKSTIIALVERFYDpQEGSVMLDGVDVRTLNVSWLRQQIGLVGQEPMLFVGTVAENIAygKVEGCTQQEIEEAATKANAHSfIVENLPQQYQTQVGIRGGKLSGGQKQRVAIARALVRKPAVLLLDEATSALDNESEKIVQAALDDMMAKqkKTTITIAHRLSTIRGADLIAVINRGKVVERGNHTSLLQQ 1496
                  57888888888885666789999999****************************986379***************************************9622568899*********9999983569*********9999999********************************************988752279999*******999999999998888766665666655 PP

>> TIGR00955  3a01204: pigment precursor permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.6   0.0   7.3e-22   4.4e-20      36     254 ..     535     749 ..     503     754 .. 0.79
   2 !   71.9   0.1   1.5e-22   8.9e-21      39     254 ..    1282    1493 ..    1265    1501 .. 0.78

  Alignments for each domain:
  == domain 1    score: 69.6 bits;  conditional E-value: 7.3e-22
   TIGR00955  36 pekellknvsGvaksGellAvlGsSGaGKtTLlnalafrsekglkvsgdvllnG...ekveakemraisayvqqdd.lfiptltvrehLmfsah.lrlkrrltkkekrerveevleelgLrkcadtrigvpgrvkglSgGerkRlalaselltdPilLfcDEPTsGLDsfsaasvvkvLkklaqkg.ktviltiHQPsselfelfdkiillaeGrvvylGspeea 254
                 p  ++ ++ s ++  G+++A+ G SG+GK+T++n +           g+v  +G   + ++ + +r+  + v q+  lf++  tv e++ +  +    ++++ +   ++  +  +++ +L +   t +g+ g    lSgG+++R+a+a   +  P + ++DE Ts LD +s   v k+L +l  k+ +t i+  H  s +  ++ dki ++ +G+vv +G+ +++
  MMETSP1137-20121227|4380_1 535 PDVQVCNGYSLHVPAGQVVALCGQSGSGKSTIINLVERFYDPHR---GAVHFDGvdvRTLNVSWLRQQIGLVGQEPvLFVG--TVAENIAYGKKdGATQEEIEAAAEMANAHGFIKD-KLPDGYGTQVGQGGS--KLSGGQKQRVAIARAXVRXPAVXLLDEATSALDTASERVVQKALDSLMAKRkRTTITIAHRLS-T-IRNADKIAVVHKGQVVESGTYDKL 749
                 778889999999**********************9875544332...3466666111566788999******998724555..6788888865515667777777999999999988.8**********9996..8************************************9999***9986655056666667655.4.5889************99998776 PP

  == domain 2    score: 71.9 bits;  conditional E-value: 1.5e-22
   TIGR00955   39 ellknvsGvaksGellAvlGsSGaGKtTLlnalafrsekglkvsgdvllnGekv...eakemraisayvqqddlfiptltvrehLmf.sahlrlkrrltkk.ekrerveevleelgLrkcadtrigvpgrvkglSgGerkRlalaselltdPilLfcDEPTsGLDsfsaasvvkvLkkl.aqkgktviltiHQPsselfelfdkiillaeGrvvylGspeea 254 
                  ++ ++ + ++ sG+++A+ G+SG+GK+T+++ +  r     +  g+v+l+G  v   + + +r+  + v q+ +++   tv e++ + + +   ++++ +  +k ++ + ++e  +L +  +t +g+ g    lSgG+++R+a+a  l+ +P +L++DE Ts LD  s + v  +L ++ a++ kt i+  H  s    +  d i ++++G+vv +G+ + +
  MMETSP1137-20121227|4380_1 1282 TICNGYTLHVPSGQVVALCGPSGSGKSTIIALVE-RFYDPQE--GSVMLDGVDVrtlNVSWLRQQIGLVGQEPMLFVG-TVAENIAYgKVEGCTQQEIEEAaTKANAHSFIVE--NLPQQYQTQVGIRGG--KLSGGQKQRVAIARALVRKPAVLLLDEATSALDNESEKIVQAALDDMmAKQKKTTITIAHRLST--IRGADLIAVINRGKVVERGNHTSL 1493
                  56677778899*****************997665.4444444..4799*99765222678899******999887654.6777777724455556666666566666666666..567888999999885..7***********************************9999999998626677777777787654..467799999999999999987766 PP

>> TIGR02324  CP_lyasePhnL: phosphonate C-P lyase system protein PhnL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.0   0.0   1.1e-20   6.9e-19      21     209 ..     537     723 ..     531     737 .. 0.79
   2 !   69.8   0.1   7.7e-22   4.7e-20      22     208 ..    1282    1466 ..    1275    1479 .. 0.73

  Alignments for each domain:
  == domain 1    score: 66.0 bits;  conditional E-value: 1.1e-20
   TIGR02324  21 lpvlkevsleveaGelvalsGksGaGkstllkslyanYlpesgrilvrhegeivdlvkaserevlevRrktigyvsqfLrviPRvsalevvaepllelGvereearakakellarlniperLWs.......laPatfsGGekqRvniaraliadrPiLLLdePtasLdaanrkvvvelikeakar.gaaligifhde 209
                 ++v++  sl+v aG++val G+sG+Gkst++  + + Y p+ g +        v    +   +v  +R ++ig v q   v+   +  e +a    + G+++ee +a+a+ + a+  i ++L            +  sGG kqRv iara +    + LLde t++Ld+a  +vv + ++++ a+   + i+i h  
  MMETSP1137-20121227|4380_1 537 VQVCNGYSLHVPAGQVVALCGQSGSGKSTIINLVERFYDPHRGAVHFDG----V---DVRTLNVSWLR-QQIGLVGQEP-VLFVGTVAENIAYG-KKDGATQEEIEAAAEMANAHGFIKDKLPDgygtqvgQGGSKLSGGQKQRVAIARAXVRXPAVXLLDEATSALDTASERVVQKALDSLMAKrKRTTITIAHRL 723
                 789**************************************99987765....3...45666788888.89******87.55444444555544.456999999999999999999999999542111211346889****************88899*******************99987654146778999864 PP

  == domain 2    score: 69.8 bits;  conditional E-value: 7.7e-22
   TIGR02324   22 pvlkevsleveaGelvalsGksGaGkstllkslyanYlpesgrilvrhegeivdlvkaserevlevRrktigyvsqfLrviPRvsalevva...epllelGvereearakakellarlniperLWs...laPatfsGGekqRvniaraliadrPiLLLdePtasLdaanrkvvvelikeak.argaaligifhd 208 
                   +++  +l+v +G++val G+sG+Gkst++  + + Y p+ g++++         v +   +v  +R ++ig v q         a +++    e  +++ +e+++++a+a++++   n+p++  +   +     sGG kqRv iaral+ +  +LLLde t++Ld+   k+v   ++++  ++  + i+i h 
  MMETSP1137-20121227|4380_1 1282 TICNGYTLHVPSGQVVALCGPSGSGKSTIIALVERFYDPQEGSVMLDG-------VDVRTLNVSWLR-QQIGLVGQEPMLFVGTVAENIAYgkvEGCTQQEIEEAATKANAHSFI-VENLPQQYQTqvgIRGGKLSGGQKQRVAIARALVRKPAVLLLDEATSALDNESEKIVQAALDDMMaKQKKTTITIAHR 1466
                  5688899************************************99876.......345566777888.899***99654444444444443101222233333333333333333.3356665543222456789****************8889******************999988651456778889885 PP

>> TIGR01978  sufC: FeS assembly ATPase SufC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.0   0.0   2.5e-20   1.5e-18      11     231 ..     535     748 ..     523     757 .. 0.81
   2 !   68.6   0.0   1.9e-21   1.2e-19      13     230 ..    1281    1491 ..    1273    1498 .. 0.80

  Alignments for each domain:
  == domain 1    score: 65.0 bits;  conditional E-value: 2.5e-20
   TIGR01978  11 edkeiLkglnlevkkGevhaimGpnGsGkstLskvlaghekyevtsGeiklkgqdlleleveeraraGlflafqapeeipGvsnkeflrsalnavrkargeeeldllefekllkeklelleldeelleRslneG...fsGGekkrneilqlallePklaiLDeiDsGlDvDalkivaegvnklree.ekalliithyerllelikPdvvhvlldGrivksGdvel 231
                  d ++ +g +l+v +G+v+a+ G+ GsGkst+ + +   + y   +G ++++g d+  l+v    r+ + l  q p+   G  ++++     + +++++ e++ ++++ +  +k+kl        + + ++ +G    sGG k+r  i +  +  P + +LDe+ s lD  + ++v + +++l  + +++++ i+h  rl    + d++ v+++G++v+sG  + 
  MMETSP1137-20121227|4380_1 535 PDVQVCNGYSLHVPAGQVVALCGQSGSGKSTIINLVE--RFYDPHRGAVHFDGVDVRTLNVSW-LRQQIGLVGQEPVLFVGTVAENIAYGKKDGATQEEIEAAAEMANAHGFIKDKLP-----DGYGT-QVGQGgskLSGGQKQRVAIARAXVRXPAVXLLDEATSALDTASERVVQKALDSLMAKrKRTTITIAH--RLSTIRNADKIAVVHKGQVVESGTYDK 748
                 5788999*************************99885..678889***************985.566778899********9999887777777775555555555555555555543.....33333.3333323389******************************************998875788888888..66677789***************8765 PP

  == domain 2    score: 68.6 bits;  conditional E-value: 1.9e-21
   TIGR01978   13 keiLkglnlevkkGevhaimGpnGsGkstLskvlaghekyevtsGeiklkgqdlleleveeraraGlflafqapeeipGvsnkeflrsalnavrkargeeeldllefekllkeklelleldeelleRs.lneG.fsGGekkrneilqlallePklaiLDeiDsGlDvDalkivaegvnklree.ekalliithyerllelikPdvvhvlldGrivksGdve 230 
                   +i +g +l+v +G+v+a+ Gp GsGkst+ + +  ++ y  ++G+++l+g d+  l+v    r+ + l  q p+   G  ++++    ++ +++++ ee+   ++ ++ +     + +l++++++   +  G  sGG k+r  i + ++ +P + +LDe+ s lD ++ kiv + ++++  + +k+++ i+h  rl      d + v+ +G++v+ G+ +
  MMETSP1137-20121227|4380_1 1281 YTICNGYTLHVPSGQVVALCGPSGSGKSTIIALV--ERFYDPQEGSVMLDGVDVRTLNVSW-LRQQIGLVGQEPMLFVGTVAENIAYGKVEGCTQQEIEEAATKANAHSFI-----VENLPQQYQTQVgIRGGkLSGGQKQRVAIARALVRKPAVLLLDEATSALDNESEKIVQAALDDMMAKqKKTTITIAH--RLSTIRGADLIAVINRGKVVERGNHT 1491
                  5789999**********************99877..5678899***************985.566778899********99999998888888855554443333332222.....2233333333321333347******************************************9987663788888888..56666678***************864 PP

>> TIGR03415  ABC_choXWV_ATP: choline ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.9   0.0   2.3e-20   1.4e-18      37     252 ..     537     749 ..     532     754 .. 0.82
   2 !   69.0   0.1   1.3e-21   7.8e-20      40     253 ..    1284    1494 ..    1280    1500 .. 0.84

  Alignments for each domain:
  == domain 1    score: 64.9 bits;  conditional E-value: 2.3e-20
   TIGR03415  37 vlgvadasldveeGeilvlmGlsGsGkssllravnglnpvsrGkvlvkdedkevdvakcdeatlrklrtkrvsmvfqkfallPWrtveenvafGlelsGvakaerrkrve..eqlelv..glaeWadkkv....gelsGGmqqrvGlarafateadillmdePfsaldPliraklqdellelqkklkktivfvshdldealklGnriaimegGrivqlgtpeei 252
                 v  +++ sl+v  G+++ l G sGsGks+++  v ++    rG v+       vdv +++ + lr    +++ +v q+  l+   tv+en+a+G   +G +++e    +e  +   ++   l +   ++v      lsGG +qrv +ara      + l+de  sald      +q  l +l +k k+t + ++h l   ++  ++ia++++G++v  gt +++
  MMETSP1137-20121227|4380_1 537 VQVCNGYSLHVPAGQVVALCGQSGSGKSTIINLVERFYDPHRGAVHFD----GVDVRTLNVSWLR----QQIGLVGQEPVLF-VGTVAENIAYGKK-DGATQEEIEAAAEmaNAHGFIkdKLPDGYGTQVgqggSKLSGGQKQRVAIARAXVRXPAVXLLDEATSALDTASERVVQKALDSLMAKRKRTTITIAHRLS-TIRNADKIAVVHKGQVVESGTYDKL 749
                 5668999*************************************9874....5889998888877....48*****997766.68*********75.677666654433310222222112333333333111158*************************************************************7.6999**************9997765 PP

  == domain 2    score: 69.0 bits;  conditional E-value: 1.3e-21
   TIGR03415   40 vadasldveeGeilvlmGlsGsGkssllravnglnpvsrGkvlvkdedkevdvakcdeatlrklrtkrvsmvfqkfallPWrtveenvafGlelsGvakaerrkrvee...qlelv.glaeWadkkv....gelsGGmqqrvGlarafateadillmdePfsaldPliraklqdellelqkklkktivfvshdldealklGnriaimegGrivqlgtpeeiv 253 
                  +++ +l+v  G+++ l G sGsGks+++  v ++     G+v++      vdv +++ + lr    +++ +v q+  l    tv+en+a+G  ++G +++e  + +++   +  +v +l +  +++v    g lsGG +qrv +ara+  +  +ll+de  sald    + +q  l ++ +k kkt + ++h l   ++  + ia+++ G++v  g+   ++
  MMETSP1137-20121227|4380_1 1284 CNGYTLHVPSGQVVALCGPSGSGKSTIIALVERFYDPQEGSVMLD----GVDVRTLNVSWLR----QQIGLVGQEPML-FVGTVAENIAYG-KVEGCTQQEIEEAATKanaHSFIVeNLPQQYQTQVgirgGKLSGGQKQRVAIARALVRKPAVLLLDEATSALDNESEKIVQAALDDMMAKQKKTTITIAHRLS-TIRGADLIAVINRGKVVERGNHTSLL 1494
                  67789************************************9985....5888888888877....48****999655.578*********.68999988876654431113334437866555554233379*************************************************************7.689999***********999876665 PP

>> TIGR01288  nodI: nodulation ABC transporter NodI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.0   0.0   1.6e-19   9.9e-18      16     224 ..     536     751 ..     521     770 .. 0.84
   2 !   71.1   0.0   2.8e-22   1.7e-20      16     225 ..    1280    1496 ..    1264    1504 .. 0.83

  Alignments for each domain:
  == domain 1    score: 62.0 bits;  conditional E-value: 1.6e-19
   TIGR01288  16 dkvvvndlsftiaagecfgllgpngagkstiarlvlglispdegkitvlgepvpa.rarlarakigvvpqfdnldreftvrenllvfgryfglstreieevipslle..fa..rleskadvrv....adlsggmkrrltlaralindpqllildepttgldpharhliwerlrsllargktilltthlmeeaerlcdrlcvleagrkiaegrpdalid 224
                 d  v n  s+ + ag++  l g  g+gksti  lv  +  p++g +   g +v + ++   r +ig+v q   l    tv en+  +g+  g +  eie++        f   +l     ++v    ++lsgg k+r+++ara +  p + +lde t+ ld  +  ++ + l sl+a+ k   +t      + r  d++ v+ +g+ +  g  d l+ 
  MMETSP1137-20121227|4380_1 536 DVQVCNGYSLHVPAGQVVALCGQSGSGKSTIINLVERFYDPHRGAVHFDGVDVRTlNVSWLRQQIGLVGQEPVLFV-GTVAENI-AYGKKDGATQEEIEAAAEMANAhgFIkdKLPDGYGTQVgqggSKLSGGQKQRVAIARAXVRXPAVXLLDEATSALDTASERVVQKALDSLMAKRKRTTITIAHRLSTIRNADKIAVVHKGQVVESGTYDKLLA 751
                 5668899*****************************************9998876378999*********888855.6999996.7*************997655440154113444445666333378************************************************99988888777778889************999999888875 PP

  == domain 2    score: 71.1 bits;  conditional E-value: 2.8e-22
   TIGR01288   16 dkvvvndlsftiaagecfgllgpngagkstiarlvlglispdegkitvlgepvpa.rarlarakigvvpqfdnldreftvrenllvfgryfglstreieevipsl..lefa......rleskadvrvadlsggmkrrltlaralindpqllildepttgldpharhliwerlrsllargktilltthlmeeaerlcdrlcvleagrkiaegrpdalide 225 
                  d  + n  ++ + +g++  l gp g+gksti  lv  +  p+eg + + g +v + ++   r +ig+v q   l    tv en+  +g+  g + +eiee+        f       + +++  +r  +lsgg k+r+++aral+  p +l+lde t+ ld  + +++   l  ++a+ k   +t      + r  d + v++ g+ +  g+  +l+++
  MMETSP1137-20121227|4380_1 1280 DYTICNGYTLHVPSGQVVALCGPSGSGKSTIIALVERFYDPQEGSVMLDGVDVRTlNVSWLRQQIGLVGQEPMLF-VGTVAENI-AYGKVEGCTQQEIEEAATKAnaHSFIvenlpqQYQTQVGIRGGKLSGGQKQRVAIARALVRKPAVLLLDEATSALDNESEKIVQAALDDMMAKQKKTTITIAHRLSTIRGADLIAVINRGKVVERGNHTSLLQQ 1496
                  4568899999************************************999988876378899*********88775.56999996.7*************98765411233212111134566667789*************************************************99888777777777889***********99998988888765 PP

>> TIGR02633  xylG: D-xylose ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.7   0.0     2e-20   1.2e-18      13     222 ..     536     743 ..     529     751 .. 0.85
   2 !   65.6   0.1   1.1e-20   6.5e-19      17     227 ..    1284    1492 ..    1275    1504 .. 0.84

  Alignments for each domain:
  == domain 1    score: 64.7 bits;  conditional E-value: 2e-20
   TIGR02633  13 gvkaldnidlklraGeivslcGenGaGkstlmkvlsgvyphGtydGeilfegeelkassirdterkGiviihqeltlvkelsvleniflGneitlkGglmdydamvlrakellrelklda...snvtrpvsdlGlGqqqlveiakalnkqvrllildepsaslteketeilldiirdlka.kgvacvyishkleevkavsdtisvirdGqhvat 222
                 +v+  ++ +l++ aG++v+lcG+ G+Gkst++ ++   y    + G ++f+g ++++ +++   r+ i ++ qe +l    +v+eni  G++       ++ +a +  a+ ++++ kl++   ++v +  s+l +Gq+q v ia+a  +   + +lde +++l  +  +++ + +  l a +  + + i+h+l  ++  +d+i+v+  Gq v +
  MMETSP1137-20121227|4380_1 536 DVQVCNGYSLHVPAGQVVALCGQSGSGKSTIINLVERFYD--PHRGAVHFDGVDVRTLNVSWL-RQQIGLVGQEPVLFVG-TVAENIAYGKKDGATQEEIEAAAEMANAHGFIKD-KLPDgygTQVGQGGSKLSGGQKQRVAIARAXVRXPAVXLLDEATSALDTASERVVQKALDSLMAkRKRTTITIAHRLSTIRN-ADKIAVVHKGQVVES 743
                 789999*****************************99995..468***************865.678*******999875.8********9988777788888888999999998.5665111344555677889****************************88877777777777754156789*********997.8*********98865 PP

  == domain 2    score: 65.6 bits;  conditional E-value: 1.1e-20
   TIGR02633   17 ldnidlklraGeivslcGenGaGkstlmkvlsgvyphGtydGeilfegeelkassirdterkGiviihqeltlvkelsvleniflGneitlkGglmdydamvlrakellrelkldas...nvtrpvsdlGlGqqqlveiakalnkqvrllildepsaslteketeilldiirdlkakg.vacvyishkleevkavsdtisvirdGqhvatkdaea 227 
                   ++ +l++ +G++v+lcG  G+Gkst++ ++   y     +G ++ +g ++++ +++   r+ i ++ qe +l    +v+eni  G+        ++++a    a++++ e  l+++   +v    ++l +Gq+q v ia+al ++  +l+lde +++l ++  +i+   + d+ ak+  + + i+h+l  ++  +d i+vi  G+ v   + ++
  MMETSP1137-20121227|4380_1 1284 CNGYTLHVPSGQVVALCGPSGSGKSTIIALVERFYD--PQEGSVMLDGVDVRTLNVSWL-RQQIGLVGQEPMLFVG-TVAENIAYGKVEGCTQQEIEEAATKANAHSFIVEN-LPQQyqtQVGIRGGKLSGGQKQRVAIARALVRKPAVLLLDEATSALDNESEKIVQAALDDMMAKQkKTTITIAHRLSTIRG-ADLIAVINRGKVVERGNHTS 1492
                  678899************************999996..469***************865.678*******999876.8********97766666788888888999887663.33330003444468999******************************9999999999999876641689*********997.7*********9987665555 PP

>> TIGR03411  urea_trans_UrtD: urea ABC transporter, ATP-binding protein UrtD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.9   0.0   2.5e-19   1.5e-17      17     229 ..     539     749 ..     522     753 .. 0.87
   2 !   66.4   0.1   1.1e-20   6.4e-19      19     228 ..    1285    1492 ..    1275    1500 .. 0.84

  Alignments for each domain:
  == domain 1    score: 61.9 bits;  conditional E-value: 2.5e-19
   TIGR03411  17 alndlslsveegelrviiGpnGaGkttllDvitGktrpdeGsvlfkgkdltklkeaeiarlGigRkfqkpsvfeeltvlenlelalkadksvlallfarlskeekerieevleligLeekadkkaglLshGqkqwLeigmllvqepkllllDePvaGmtdeetektaellkel..akersvvvvehDmefvrelaekvtvlheGkvlaeGsldev 229
                   n  sl+v +g++ ++ G  G+Gk+t+++++     p++G v f+g d++ l+ +   r+ ig   q+p +f   tv+en+    k+  +  ++ +a   ++++  i++ l   g  +++ +  ++Ls Gqkq++ i+   v+ p++ llDe ++ + ++ ++ + + l +l  +++r+ + + h ++ +r+ a+k++v+h+G+v+  G+ d++
  MMETSP1137-20121227|4380_1 539 VCNGYSLHVPAGQVVALCGQSGSGKSTIINLVERFYDPHRGAVHFDGVDVRTLNVS-WLRQQIGLVGQEPVLFV-GTVAENIAYGKKDGATQEEIEAAAEMANAHGFIKDKLPD-GYGTQVGQGGSKLSGGQKQRVAIARAXVRXPAVXLLDEATSALDTASERVVQKALDSLmaKRKRTTITIAHRLSTIRN-ADKIAVVHKGQVVESGTYDKL 749
                 567889********************************************998876.56778********9997.59****998887777666666666666666778877765.788999999**********************************99888888888888733457899**********98.679**************9986 PP

  == domain 2    score: 66.4 bits;  conditional E-value: 1.1e-20
   TIGR03411   19 ndlslsveegelrviiGpnGaGkttllDvitGktrpdeGsvlfkgkdltklkeaeiarlGigRkfqkpsvfeeltvlenlelalkadksvlallfarlskeekerieevleligLeekadkkaglLshGqkqwLeigmllvqepkllllDePvaGmtdeetektaellkel.a.kersvvvvehDmefvrelaekvtvlheGkvlaeGslde 228 
                  n  +l+v +g++ ++ Gp G+Gk+t++ ++     p+eGsv+++g d++ l+ +   r+ ig   q+p +f   tv+en+     +  +  ++  a +++++++ i e l + + ++++  + g+Ls Gqkq++ i+  lv++p++lllDe ++ + +e ++ +   l ++ a ++++ + + h ++ +r  a+ ++v+++Gkv+  G+  +
  MMETSP1137-20121227|4380_1 1285 NGYTLHVPSGQVVALCGPSGSGKSTIIALVERFYDPQEGSVMLDGVDVRTLNVS-WLRQQIGLVGQEPMLFV-GTVAENIAYGKVEGCTQQEIEEAATKANAHSFIVENLPQ-QYQTQVGIRGGKLSGGQKQRVAIARALVRKPAVLLLDEATSALDNESEKIVQAALDDMmAkQKKTTITIAHRLSTIRG-ADLIAVINRGKVVERGNHTS 1492
                  677899******************************************998876.56778***********7.59****988877776666666666666666667776665.678899999*********************************9877666655555554241567999*********97.679***********998655 PP

>> TIGR01189  ccmA: heme ABC exporter, ATP-binding protein CcmA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.4   0.1   6.4e-19   3.8e-17      15     188 ..     539     723 ..     534     734 .. 0.79
   2 !   66.8   0.0   7.3e-21   4.4e-19      13     188 ..    1281    1467 ..    1274    1476 .. 0.80

  Alignments for each domain:
  == domain 1    score: 60.4 bits;  conditional E-value: 6.4e-19
   TIGR01189  15 lleglsfelaaGealvveGpnGiGKttLLRilaGLlkpesGevelndkelaeqrdelaeellylgHldglKaeLsalEnLkfyaallqseqktveealekvgLsgled........lpv....aqLsAGqkrRlalarLllskaplWiLDEPttalDkegvellaellaaHlargGivllathqdl 188
                 + +g s+++ aG+++++ G+ G+GK+t++ ++     p+ G v++++ ++ + + ++ ++   l  ++ +    +++En+ + +++ ++++ ++e+a e ++ +g+ +        + v    ++Ls Gqk+R+a+ar  +    + +LDE t alD+++ ++++++l++ +a+   + ++  + l
  MMETSP1137-20121227|4380_1 539 VCNGYSLHVPAGQVVALCGQSGSGKSTIINLVERFYDPHRGAVHFDGVDVRTLNVSWLRQQIGLVGQEPVLFVGTVAENIAYGKKDGATQE-EIEAAAEMANAHGFIKdklpdgygTQVgqggSKLSGGQKQRVAIARAXVRXPAVXLLDEATSALDTASERVVQKALDSLMAKRKRTTITIAHRL 723
                 6677899*******************************************999988876666555566667788********999998555.888888888877764311111111233222257*******************************************998887666655554444 PP

  == domain 2    score: 66.8 bits;  conditional E-value: 7.3e-21
   TIGR01189   13 rvlleglsfelaaGealvveGpnGiGKttLLRilaGLlkpesGevelndkelaeqrdelaeellylgHldglKaeLsalEnLkfyaallqseqktveealekvgLsgl..edlpva..........qLsAGqkrRlalarLllskaplWiLDEPttalDkegvellaellaaHlargGivllathqdl 188 
                   ++ +g ++++ +G+++++ Gp G+GK+t++ ++     p++G+v l++ ++ + + ++ ++   l  ++ +    +++En+ + + + + +q+++eea +k++ + +  e+lp +          +Ls Gqk+R+a+ar l+ k  + +LDE t alD+e+ ++++++l++ +a++  + ++  + l
  MMETSP1137-20121227|4380_1 1281 YTICNGYTLHVPSGQVVALCGPSGSGKSTIIALVERFYDPQEGSVMLDGVDVRTLNVSWLRQQIGLVGQEPMLFVGTVAENIAYGK-VEGCTQQEIEEAATKANAHSFivENLPQQyqtqvgirggKLSGGQKQRVAIARALVRKPAVLLLDEATSALDNESEKIVQAALDDMMAKQKKTTITIAHRL 1467
                  567788899********************************************99988877766666667777889******9765.5555666888888877655432233332211111122337**********************************************999988888766665 PP

>> TIGR03522  GldA_ABC_ATP: gliding motility-associated ABC transporter ATP-binding subunit GldA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.8   0.1   5.6e-16   3.4e-14      16     224 ..     538     754 ..     521     770 .. 0.72
   2 !   66.6   0.2   8.8e-21   5.3e-19      18     221 ..    1284    1495 ..    1265    1505 .. 0.75

  Alignments for each domain:
  == domain 1    score: 50.8 bits;  conditional E-value: 5.6e-16
   TIGR03522  16 kaldevsfeaekGeivGflGPnGaGkstlmkiltgylkadsGsvavagedvlk.nslevrkniGylPehnPlyldlyvreylefsaalyklkgrklkkrv...eelielvGlkaeq.........hkkigalskGyrqrvGlakallhdPkvlildePttGldPnqlveirevike.iakdk.tvilsthimqevealcdrviiinkGkivadkkleelkaaek 224
                 ++ +  s+++  G++v + G  G+Gkst++ ++  +  ++ G+v+ +g dv + n    r++iG + +   l++   v e +++       k+ + ++++   +e+ +  G+ +++          +  ++ls G +qrv +a+a +  P v +lde t+ ld      +++ + + +ak k t i  +h +  ++   d++ +++kG++v + + ++l a+ +
  MMETSP1137-20121227|4380_1 538 QVCNGYSLHVPAGQVVALCGQSGSGKSTIINLVERFYDPHRGAVHFDGVDVRTlNVSWLRQQIGLVGQEPVLFVG-TVAENIAYG-----KKDGATQEEIeaaAEMANAHGFIKDKlpdgygtqvGQGGSKLSGGQKQRVAIARAXVRXPAVXLLDEATSALDTASERVVQKALDSlMAKRKrTTITIAHRLSTIRN-ADKIAVVHKGQVVESGTYDKLLAIGQ 754
                 577889999******************************************8725556899***88877666665.567766653.....33333333330003444444544433111110000444568********************************9876666666655156554388889999999986.69**************9999977655 PP

  == domain 2    score: 66.6 bits;  conditional E-value: 8.8e-21
   TIGR03522   18 ldevsfeaekGeivGflGPnGaGkstlmkiltgylkadsGsvavagedvlk.nslevrkniGylPehnPlyldlyvreylef...sa.alyklkgrklkkrveeli.elvGlkaeqhkki..galskGyrqrvGlakallhdPkvlildePttGldPnqlveire.vikeiak.dktvilsthimqevealcdrviiinkGkivadkkleelka 221 
                   +  ++++  G++v + GP G+Gkst++ ++  +  ++ Gsv+++g dv + n    r++iG + +   l++   v e +++   ++ +  ++++ + k + + +i e+   + ++   i  g+ls G +qrv +a+al+ +P vl+lde t+ ld +    +++ +  ++ak +kt i  +h +  ++   d + +in+Gk+v   + ++l +
  MMETSP1137-20121227|4380_1 1284 CNGYTLHVPSGQVVALCGPSGSGKSTIIALVERFYDPQEGSVMLDGVDVRTlNVSWLRQQIGLVGQEPMLFVG-TVAENIAYgkvEGcTQQEIEEAATKANAHSFIvENLPQQYQTQVGIrgGKLSGGQKQRVAIARALVRKPAVLLLDEATSALDNESEKIVQAaLDDMMAKqKKTTITIAHRLSTIRG-ADLIAVINRGKVVERGNHTSLLQ 1495
                  5677889999***************************************8725556899***88877666666.57776665111331345566666666666544144444444443344489********************************87544444404556665167999999*9999987.69999********9998888755 PP

>> TIGR03740  galliderm_ABC: lantibiotic protection ABC transporter, ATP-binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.1   0.0   4.8e-16   2.9e-14      14     208 ..     538     746 ..     523     751 .. 0.78
   2 !   61.2   0.0     4e-19   2.4e-17      14     206 ..    1282    1488 ..    1268    1505 .. 0.75

  Alignments for each domain:
  == domain 1    score: 51.1 bits;  conditional E-value: 4.8e-16
   TIGR03740  14 avvnnvslkvkknsvygllGpnGaGkstllklltGllrktsGeilldgrew...trkdl.kkiGsliesPalyenltarenlkvrtlllglpesrieevlkivdlentekkk............akqfslGmkqrlGiaiallnkPkllildePtnGldPlGiqelreliksfp.ekGitvilsshilsevelladhiGiiseGklkyekki 208
                 +v n  sl+v+  +v +l G  G+Gkst++ l+  +  +  G + +dg ++   + + l ++iG + ++P l+   t  en+    +  g  +++ie   ++ + +   k k             +++s G kqr+ ia a ++ P + +lde t  ld    + +++ + s+  ++  t i  +h ls +++ ad+i ++++G++   + +
  MMETSP1137-20121227|4380_1 538 QVCNGYSLHVPAGQVVALCGQSGSGKSTIINLVERFYDPHRGAVHFDGVDVrtlNVSWLrQQIGLVGQEPVLFVG-TVAENIAY-GKKDGATQEEIEAAAEMANAHGFIKDKlpdgygtqvgqgGSKLSGGQKQRVAIARAXVRXPAVXLLDEATSALDTASERVVQKALDSLMaKRKRTTITIAHRLSTIRN-ADKIAVVHKGQVVESGTY 746
                 678899*****************************************9765111445553479988899999876.66688864.56677788888877777766554443311111111111146799**************************************999997515567788889******86.9*********99766655 PP

  == domain 2    score: 61.2 bits;  conditional E-value: 4e-19
   TIGR03740   14 avvnnvslkvkknsvygllGpnGaGkstllklltGllrktsGeilldgrew...trkdl.kkiGsliesPalyenltarenlkvrtlllglpesrieevlk.......iv.dlentekk....kakqfslGmkqrlGiaiallnkPkllildePtnGldPlGiqelrelik.sfpekGitvilsshilsevelladhiGiiseGklkyek 206 
                  ++ n  +l+v++ +v +l Gp G+Gkst++ l+  +  +++G+++ldg ++   + + l ++iG + ++P l+   t  en+    +++g  +++iee  +       iv +l ++ +     + +++s G kqr+ ia al++kP +l+lde t  ld    + ++  +   + ++  t i  +h ls ++  ad i +i+ Gk+  ++
  MMETSP1137-20121227|4380_1 1282 TICNGYTLHVPSGQVVALCGPSGSGKSTIIALVERFYDPQEGSVMLDGVDVrtlNVSWLrQQIGLVGQEPMLFVG-TVAENIA-YGKVEGCTQQEIEEAATkanahsfIVeNLPQQYQTqvgiRGGKLSGGQKQRVAIARALVRKPAVLLLDEATSALDNESEKIVQAALDdMMAKQKKTTITIAHRLSTIRG-ADLIAVINRGKVVERG 1488
                  56788899**************************************99765111445553479999999999976.5567774.34556666666665544111111122234444444111245799*******************************99888777666515677888888889******85.9*********997655 PP

>> TIGR03771  anch_rpt_ABC: anchored repeat-type ABC transporter, ATP-binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.4   0.5   7.9e-16   4.8e-14       2     199 ..     546     749 ..     545     754 .. 0.78
   2 !   64.1   0.3   5.3e-20   3.2e-18       2     199 ..    1290    1493 ..    1289    1502 .. 0.73

  Alignments for each domain:
  == domain 1    score: 50.4 bits;  conditional E-value: 7.9e-16
   TIGR03771   2 svdkGellgllGpnGaGkttllrailglikvakGsvkvagkssrkgrreiGyvpqrhefawdfpidveqtvlsGra..gliGllrrp.kkadfaavadalervklteladrpvGe....lsGGqrqrvlvaralavkpslllldepftGldlpsqellvelfeelage.gtailmtthdlaeavatcdrv.vllngrvvadgapdql 199
                 +v +G++++l G  G+Gk+t++  +  +  +++G v+ +g        ++ ++ q+  +  + p+   +tv +  a  ++ G  +   + a  +a a+ + + kl +     vG+    lsGGq+qrv +ara    p + llde  + ld+ s+  + + + +l ++ +++ +  +h l+     +d++ v+  g+vv  g+ d+l
  MMETSP1137-20121227|4380_1 546 HVPAGQVVALCGQSGSGKSTIINLVERFYDPHRGAVHFDGVDV--RTLNVSWLRQQIGLVGQEPVLFVGTVAENIAygKKDGATQEEiEAAAEMANAHGFIKDKLPDGYGTQVGQggskLSGGQKQRVAIARAXVRXPAVXLLDEATSALDTASERVVQKALDSLMAKrKRTTITIAHRLSTI-RNADKIaVVHKGQVVESGTYDKL 749
                 6779************************************744..45677788888888877787776666654432134455554413445567778888889999888999855555*****************************************99998665156777778888765.55565516668999999998877 PP

  == domain 2    score: 64.1 bits;  conditional E-value: 5.3e-20
   TIGR03771    2 svdkGellgllGpnGaGkttllrailglikvakGsvkvagkssrk...g..rreiGyvpqrhe.fawdfpidveqtvlsGragliGllrrpkkadfaavadalervklteladrpvGelsGGqrqrvlvaralavkpslllldepftGldlpsqellvelfeel.agegtailmtthdlaeavatcdrvvlln.grvvadgapdql 199 
                  +v +G++++l Gp G+Gk+t++  +  +  +++Gsv ++g   r+   +  r++iG v q    f      +++   ++G +++      +k + +  + + l +   t++  r  G+lsGGq+qrv +aral  kp +lllde  + ld+ s++ +   + ++ a+++++ +  +h l+ ++  +d + ++n g+vv  g+ + l
  MMETSP1137-20121227|4380_1 1290 HVPSGQVVALCGPSGSGKSTIIALVERFYDPQEGSVMLDGVDVRTlnvSwlRQQIGLVGQEPMlFVGTVAENIAYGKVEGCTQQEIEEAATKANAHSFIVENLPQQYQTQVGIRG-GKLSGGQKQRVAIARALVRKPAVLLLDEATSALDNESEKIVQAALDDMmAKQKKTTITIAHRLS-TIRGADLIAVINrGKVVERGNHTSL 1493
                  5778*********************************999765541112114567777775431455555555555555555544444444555555666666666666666664.8************************************999988887651667777888888886.6888999988883578877766555 PP

>> TIGR03269  met_CoM_red_A2: methyl coenzyme M reductase system, component A2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.0   0.0    0.0004     0.024      11      59 ..     535     581 ..     516     618 .. 0.77
   2 !   40.5   0.0   4.6e-13   2.8e-11     168     258 ..     662     751 ..     654     779 .. 0.86
   3 !    7.1   0.0    0.0059      0.36      19      60 ..    1287    1326 ..    1266    1364 .. 0.67
   4 !   44.4   0.1     3e-14   1.8e-12     168     257 ..    1406    1494 ..    1374    1506 .. 0.90

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 0.0004
   TIGR03269  11 dglevlknisleleeGevlGilGksGaGksvllhllrGldeyeptsGki 59 
                  +++v +  sl++  G+v+ + G+sG+Gks +++l+     y+p+ G +
  MMETSP1137-20121227|4380_1 535 PDVQVCNGYSLHVPAGQVVALCGQSGSGKSTIINLVERF--YDPHRGAV 581
                 367788888888889999999999999999888887644..44555555 PP

  == domain 2    score: 40.5 bits;  conditional E-value: 4.6e-13
   TIGR03269 168 dlsGGekqrvvlarqlakeplllladeptGtldpktaklvhealkeavkeedislvltshwpeviedlsdkaillekGeiveeGepeevva 258
                 +lsGG+kqrv +ar  ++ p + l de t +ld  +  +v +al   + +++ + +  +h    i + +dk  +++kG++ve G+ ++++a
  MMETSP1137-20121227|4380_1 662 KLSGGQKQRVAIARAXVRXPAVXLLDEATSALDTASERVVQKALDSLMAKRKRTTITIAHRLSTIRN-ADKIAVVHKGQVVESGTYDKLLA 751
                 69**********************************************9999999999999999988.6777789**********998765 PP

  == domain 3    score: 7.1 bits;  conditional E-value: 0.0059
   TIGR03269   19 isleleeGevlGilGksGaGksvllhllrGldeyeptsGkii 60  
                    l++  G+v+ + G sG+Gks ++ l+     y+p++G ++
  MMETSP1137-20121227|4380_1 1287 YTLHVPSGQVVALCGPSGSGKSTIIALVERF--YDPQEGSVM 1326
                  4555666666666666666666666665543..446666554 PP

  == domain 4    score: 44.4 bits;  conditional E-value: 3e-14
   TIGR03269  168 dlsGGekqrvvlarqlakeplllladeptGtldpktaklvhealkeavkeedislvltshwpeviedlsdkaillekGeiveeGepeevv 257 
                  +lsGG+kqrv +ar l+++p +ll de t +ld ++ k+v  al + + +++ + +  +h    i   +d   +++ G++ve G+ + ++
  MMETSP1137-20121227|4380_1 1406 KLSGGQKQRVAIARALVRKPAVLLLDEATSALDNESEKIVQAALDDMMAKQKKTTITIAHRLSTIRG-ADLIAVINRGKVVERGNHTSLL 1494
                  69********************************************999999999999999888876.5666679*********987665 PP

>> TIGR03719  ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.0   3.9e-05    0.0024     323     382 ..     522     585 ..     500     606 .. 0.78
   2 !   25.4   0.0   1.8e-08   1.1e-06     160     248 ..     661     751 ..     653     782 .. 0.72
   3 !   17.2   0.0   5.3e-06   0.00032     323     385 ..    1266    1332 ..    1222    1366 .. 0.75
   4 !   40.2   0.0   5.7e-13   3.4e-11     161     250 ..    1406    1497 ..    1393    1507 .. 0.85

  Alignments for each domain:
  == domain 1    score: 14.4 bits;  conditional E-value: 3.9e-05
   TIGR03719 323 ievenlskafg...dklliddlsfklpkggivGviGpnGaGkstlfklitgkekpdsGelki.G 382
                 iev+++  a+    d  + +  s+++p+g +v + G  G+Gkst+++l+    +p++G++++ G
  MMETSP1137-20121227|4380_1 522 IEVKDVYFAYPsapDVQVCNGYSLHVPAGQVVALCGQSGSGKSTIINLVERFYDPHRGAVHFdG 585
                 5666666655422256788999*************************************98733 PP

  == domain 2    score: 25.4 bits;  conditional E-value: 1.8e-08
   TIGR03719 160 eklsGGekrrvalcrlllekPdlllldePtnhldaesvaWlekfl....keykGtvvavthdryfldnvaeWileldrGegipykgnysswle 248
                 +klsGG+k+rva++r  +  P + llde t  ld+ s   ++k l    ++ k t + ++h    + n a+ i  + +G+ +   g y + l 
  MMETSP1137-20121227|4380_1 661 SKLSGGQKQRVAIARAXVRXPAVXLLDEATSALDTASERVVQKALdslmAKRKRTTITIAHRLSTIRN-ADKIAVVHKGQVVE-SGTYDKLLA 751
                 68********************************9887665555511116678899999997666665.56788888888765.577777665 PP

  == domain 3    score: 17.2 bits;  conditional E-value: 5.3e-06
   TIGR03719  323 ievenlskafgdkl...liddlsfklpkggivGviGpnGaGkstlfklitgkekpdsGelki.Getv 385 
                  i+++++  a+  +l   + +  ++++p g +v + Gp G+Gkst++ l+    +p++G++ + G  v
  MMETSP1137-20121227|4380_1 1266 IQLQDVVFAYPTRLdytICNGYTLHVPSGQVVALCGPSGSGKSTIIALVERFYDPQEGSVMLdGVDV 1332
                  55666666666554222788999************************************98733333 PP

  == domain 4    score: 40.2 bits;  conditional E-value: 5.7e-13
   TIGR03719  161 klsGGekrrvalcrlllekPdlllldePtnhldaesvaW....lekflkeykGtvvavthdryfldnvaeWileldrGegipykgnysswleqk 250 
                  klsGG+k+rva++r l+ kP +lllde t  ld es +     l+ ++++ k t + ++h r      a+ i  ++rG+ +  +gn++s l+q+
  MMETSP1137-20121227|4380_1 1406 KLSGGQKQRVAIARALVRKPAVLLLDEATSALDNESEKIvqaaLDDMMAKQKKTTITIAH-RLSTIRGADLIAVINRGKVVE-RGNHTSLLQQR 1497
                  8**********************************9765111166667778899*****9.55556789*********9886.9*****99997 PP

>> TIGR01257  rim_protein: rim ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.3   0.0     1e-17     6e-16     956    1164 ..     550     766 ..     529     810 .. 0.81
   2 !   45.8   0.1   3.7e-15   2.2e-13     956    1148 ..    1294    1494 ..    1268    1507 .. 0.80

  Alignments for each domain:
  == domain 1    score: 54.3 bits;  conditional E-value: 1e-17
   TIGR01257  956 nqitaflghngagktttlsiltgllpptsgtvlvggkdiet.nldavrqslgmcpqhnilfhhltvaehilfyaqlkgrswee..aqlemea...mledt...glhhkrneeaqdlsgglqrklsvaiafvgdakvvvldeptsgvdpysrrsiwdll..lkyrsgrtiimsthhmdeadllgdriaiisqgrlycsgtplflkncfgtglyltlvrkmk 1164
                   q+ a+ g+ g+gk+t + ++  +  p  g+v   g d+ t n+  +rq +g++ q  +lf   tvae i  y +  g ++ee  a  em     +++d    g   +  +    lsgg ++++++a a v    v +lde ts +d  s r +   l  l  +  rt i  +h +       d+ia++ +g++  sgt   l      g +  l +k  
  MMETSP1137-20121227|4380_1  550 GQVVALCGQSGSGKSTIINLVERFYDPHRGAVHFDGVDVRTlNVSWLRQQIGLVGQEPVLFV-GTVAENIA-YGKKDGATQEEieAAAEMANahgFIKDKlpdGYGTQVGQGGSKLSGGQKQRVAIARAXVRXPAVXLLDEATSALDTASERVVQKALdsLMAKRKRTTITIAHRLSTIR-NADKIAVVHKGQVVESGTYDKLLAIGQGGRFYELAQKQE 766 
                  699************************************9878999**************97.59***985.7888999998722556664322256664333777778888999*************************************9976653344556788888899987664.68****************876665555555555655554 PP

  == domain 2    score: 45.8 bits;  conditional E-value: 3.7e-15
   TIGR01257  956 nqitaflghngagktttlsiltgllpptsgtvlvggkdiet.nldavrqslgmcpqhnilfhhltvaehilfyaqlkgrsw...eeaqlemea...mledtglhhkrneeaq..dlsgglqrklsvaiafvgdakvvvldeptsgvdpysrrsiwdll..lkyrsgrtiimsthhmdeadllgdriaiisqgrlycsgtplflk 1148
                   q+ a+ g  g+gk+t ++++  +  p  g+v++ g d+ t n+  +rq +g++ q  +lf   tvae i  y ++ g ++   eea  + +a   ++e+   +++ +   +   lsgg ++++++a a+v    v++lde ts +d  s + +   l  +  +  +t i  +h +       d ia+i++g++   g    l 
  MMETSP1137-20121227|4380_1 1294 GQVVALCGPSGSGKSTIIALVERFYDPQEGSVMLDGVDVRTlNVSWLRQQIGLVGQEPMLFV-GTVAENIA-YGKVEGCTQqeiEEAATKANAhsfIVENLPQQYQTQVGIRggKLSGGQKQRVAIARALVRKPAVLLLDEATSALDNESEKIVQAALddMMAKQKKTTITIAHRLSTI-RGADLIAVINRGKVVERGNHTSLL 1494
                  699************************************9878999**************97.59***986.7888887651225676666654445788777776665544338***********************************99877665222335567788888888654.34689*******998887665554 PP

>> TIGR01194  cyc_pep_trnsptr: cyclic peptide transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.0     0.035       2.1      41     167 ..     132     260 ..     111     281 .. 0.81
   2 !   45.0   0.0     2e-14   1.2e-12     334     549 ..     519     742 ..     461     745 .. 0.82
   3 ?   -1.7   0.5       2.8   1.7e+02      56     177 ..     927    1053 ..     894    1085 .. 0.68
   4 !   49.9   0.0   6.5e-16   3.9e-14     333     549 ..    1262    1486 ..    1210    1491 .. 0.86

  Alignments for each domain:
  == domain 1    score: 4.6 bits;  conditional E-value: 0.035
   TIGR01194  41 inqalheetflrq.vllsfvGlsllallsrivadlfta.yvsqriiarlrkelgekvlsapleeverrrahrlltlltsdidtlsdtll.ilttllvelavtlfglaylayl.svvvflltvvl.ivlGvaa 167
                  n a+ +++  rq vll  vG   +al +  +  ++++  +  r++a  +ke  + ++   l   +  +  +l + +   + t++d l   +  l  ++   l++l+   y   +v f++  +  +v+G+a 
  MMETSP1137-20121227|4380_1 132 SNGAFDQDELTRQaVLLVVVG---VALWFGTGIYMGATdIAKVRMMACYKKEYVKSIIRQDLSWFDTNNPSELAPGIGAAMSTIEDGLGnKVMQLFENSGTGLGCLGIAFYYnPWVSFVVVATFpVVMGAAG 260
                 588999999999989999999...6899999999986615678******************************************98751566777788999****98665416898887665426666653 PP

  == domain 2    score: 45.0 bits;  conditional E-value: 2e-14
   TIGR01194 334 vdslelkdvrysyk...dvessegfalGpidlriasGelvyivGenGcGkstliklllGlyipqeGellldGeavsdesrddyrdlfsavfadyylfddlvqpd...ekkqasldqattylsrleled...kvkvedlnyst.....ttdlstGqrkrlalvnayleerpvllldewaadqdpafkrvfyeellpdlkrrGktilvishddryfeladrlikladGkvvk 549
                  + +e+kdv ++y+   dv+  +g+      l++  G++v + G+ G Gkst+i l+  +y p  G + +dG  v        r+    v  +  lf   v  +    kk+ ++++  +    +  ++   k k+ d +y t      ++ls Gq++r+a+  a +    v llde ++  d a  rv  + l   + +r +t + i+h     + ad++  + +G+vv+
  MMETSP1137-20121227|4380_1 519 RGEIEVKDVYFAYPsapDVQVCNGY-----SLHVPAGQVVALCGQSGSGKSTIINLVERFYDPHRGAVHFDGVDVRTLNVSWLRQQIGLVGQEPVLFVGTVAENiayGKKDGATQEEIEAAAEMANAHgfiKDKLPD-GYGTqvgqgGSKLSGGQKQRVAIARAXVRXPAVXLLDEATSALDTASERVVQKALDSLMAKRKRTTITIAHRLSTIRNADKIAVVHKGQVVE 742
                 578999***9988621145555555.....6799***************************************************************9888743222355555555444444444333111223333.444311122479******************************************999999999***************************97 PP

  == domain 3    score: -1.7 bits;  conditional E-value: 2.8
   TIGR01194   56 lsfvGlsllallsrivadlftayvsqriiarlrkelgekvlsapleev..errrahrlltlltsdidtlsdtll.ilttllvelavtlfgla...ylaylsvvvfll.tvvlivlGvaayllarsrGlk 177 
                  +   G+  +a++   +a l+    +q++ ++lr    +  l   +     e   a +l + l + +  ++++    + tll     ++ gl+   y+ y  + + +l +v +i l ++++++++ +  k
  MMETSP1137-20121227|4380_1  927 YIIIGVVAVAVITAETACLGI--PGQHLTTNLRSLCMRTFLKQDMGYFdaESNSAGELTSFLEEKVTLVQAMNGeKIGTLLRTIFTLVSGLGlvfYFGYWQLSLVMLaSVPIIALAMSVQMMVQLGATK 1053
                  456677777777777777764..6899999999888888898888755115567888889999888888877641445555444444444441115565443333321455666666667776666555 PP

  == domain 4    score: 49.9 bits;  conditional E-value: 6.5e-16
   TIGR01194  333 svdslelkdvrysykdvessegfalGpidlriasGelvyivGenGcGkstliklllGlyipqeGellldGeavsdesrddyrdlfsavfadyylfddlvqpd...ekkqasldqattylsrleledkvkvedl..nysttt.....dlstGqrkrlalvnayleerpvllldewaadqdpafkrvfyeellpdlkrrGktilvishddryfeladrlikladGkvvk 549 
                  + + ++l+dv ++y+              l++ sG++v + G  G Gkst+i l+  +y pqeG ++ldG  v        r+    v  +  lf   v  +    k +  ++q  +   +   ++   ve+l  +y t       +ls Gq++r+a+  a + +  vlllde ++  d    ++    l   + ++ kt + i+h     + ad +  +  Gkvv+
  MMETSP1137-20121227|4380_1 1262 CAGDIQLQDVVFAYPTRLDYT--ICNGYTLHVPSGQVVALCGPSGSGKSTIIALVERFYDPQEGSVMLDGVDVRTLNVSWLRQQIGLVGQEPMLFVGTVAENiayGKVEGCTQQEIEEAATKANAHSFIVENLpqQYQTQVgirggKLSGGQKQRVAIARALVRKPAVLLLDEATSALDNESEKIVQAALDDMMAKQKKTTITIAHRLSTIRGADLIAVINRGKVVE 1486
                  567899999999998754332..33456899****************************************************************99888542223556778888788888888898888886335665432333379*************************************9999998899******************************97 PP

>> TIGR00954  3a01203: peroxysomal long chain fatty acyl transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.2   0.0   5.3e-13   3.2e-11     445     643 ..     514     726 ..     483     734 .. 0.75
   2 !   50.3   0.0   4.5e-16   2.7e-14     465     643 ..    1280    1470 ..    1258    1481 .. 0.80

  Alignments for each domain:
  == domain 1    score: 40.2 bits;  conditional E-value: 5.3e-13
   TIGR00954 445 kveaqdngikfeniplvtP..egdvlieeLsfevksGnhlLiiGPnGcGKsslfRilgelW.Pvyg..........glltkpeegklFyvPqrPYmslgtlRdqiiYPdssedfkerglsdkdLeqiLeevkLedlleregg...wdavqdWkdvLsgGekqRiamARlfyHkPkfavLDEctsAvsvdvEd....klyelakevgitllsvshrksLw 643
                 ++++    i + ++  + P   +  + +  s++v+ G+ + ++G  G GKs +  ++  ++ P +g           l     ++++  v q P + +gt+ + i Y ++       g +++++e+  e  + +  ++ +        v +    LsgG+kqR+a+AR     P   +LDE+tsA+    E     +l +l+ + + t ++++hr s +
  MMETSP1137-20121227|4380_1 514 TLTQVRGEIEVKDVYFAYPsaPDVQVCNGYSLHVPAGQVVALCGQSGSGKSTIINLVERFYdPHRGavhfdgvdvrTLNVSWLRQQIGLVGQEPVLFVGTVAENIAYGKKD------GATQEEIEAAAEMANAHGFIKDKLPdgyGTQVGQGGSKLSGGQKQRVAIARAXVRXPAVXLLDEATSALDTASERvvqkALDSLMAKRKRTTITIAHRLSTI 726
                 456667788999999999942234567999****************************998688889****99663333334689**********************8654......55555666666666666555554422223467888899******************************9887665000144455566777889999998866 PP

  == domain 2    score: 50.3 bits;  conditional E-value: 4.5e-16
   TIGR00954  465 gdvlieeLsfevksGnhlLiiGPnGcGKsslfRilgelW.Pvyg..........glltkpeegklFyvPqrPYmslgtlRdqiiYPdssedfkerglsdkdLeqiLeevkLedllereggwdavqdWkdvLsgGekqRiamARlfyHkPkfavLDEctsAvsvdvEdklyela....kevgitllsvshrksLw 643 
                  +  + +  +++v+sG+ + ++GP G GKs +  ++  ++ P  g           l     ++++  v q P + +gt+ + i Y  ++e  ++++++++  ++  +   +e+l ++  +   ++     LsgG+kqR+a+AR +  kP   +LDE+tsA+  + E+ +  ++     + + t ++++hr s +
  MMETSP1137-20121227|4380_1 1280 DYTICNGYTLHVPSGQVVALCGPSGSGKSTIIALVERFYdPQEGsvmldgvdvrTLNVSWLRQQIGLVGQEPMLFVGTVAENIAYG-KVEGCTQQEIEEAATKANAHSFIVENLPQQYQTQVGIRG--GKLSGGQKQRVAIARALVRKPAVLLLDEATSALDNESEKIVQAALddmmAKQKKTTITIAHRLSTI 1470
                  4567788899*************************9998566669999999663333334689**********************7.578888889999999988888888888888777766765..67********************************99998766555111144566889999998865 PP

>> TIGR02323  CP_lyasePhnK: phosphonate C-P lyase system protein PhnK
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.6   0.3   5.2e-15   3.1e-13      21     222 ..     543     746 ..     523     754 .. 0.78
   2 ?   -1.4   0.0       4.9     3e+02      83     125 ..    1047    1089 ..     986    1119 .. 0.69
   3 !   43.7   0.8   7.8e-14   4.7e-12      24     228 ..    1291    1497 ..    1277    1508 .. 0.68

  Alignments for each domain:
  == domain 1    score: 47.6 bits;  conditional E-value: 5.2e-15
   TIGR02323  21 vsf.lypGevlgivGesGsGkstllkalaarlladaGevtyesrsrelellalseaerrlllrtewGlvhqnprGlrmevsaGanigerllavgarhyG.kiraaak.wlekveidaa.ri....kpaafsGGmqqrlqiarnlvtrprlvfm.eptGGlvsvqarll..llrglvrelglaviivth.lavarllaqrllvmkqGrvvesGlt 222
                  s+ +  G+v+++ G+sGsGkst+++ +     +++G v+++  +    + +l+ +     lr + Glv q+p  +  +v+     g++  a+ +        a+a+ ++++ +++ +  +      +++sGG +qr+ iar+ v  p + ++ e t  l +   r++   l +l+ + + ++i ++h l+ +r  a+++ v+++G+vvesG  
  MMETSP1137-20121227|4380_1 543 YSLhVPAGQVVALCGQSGSGKSTIINLVERFYDPHRGAVHFDGVD----VRTLNVS----WLRQQIGLVGQEPVLFVGTVAENIAYGKKDGATQEEIEAaAEMANAHgFIKD-KLPDGyGTqvgqGGSKLSGGQKQRVAIARAXVRXPAVXLLdEATSALDTASERVVqkALDSLMAKRKRTTITIAHrLSTIRN-ADKIAVVHKGQVVESGTY 746
                 45535569*********************************9776....5555443....5678899999999988888887777777777765433220222333424443.4443212222546799*********************9999******9999999877899***************9999996.889************975 PP

  == domain 2    score: -1.4 bits;  conditional E-value: 4.9
   TIGR02323   83 tewGlvhqnpr..GlrmevsaGanigerllavgarhyGkiraaak 125 
                   + G  +q +   G + e saG+ ige ++  g r      a+++
  MMETSP1137-20121227|4380_1 1047 VQLGATKQGAEksGAKEEKSAGSFIGEVVI--GIRTVSSFSAEQT 1089
                  4567777766556999999*******9655..5566665555554 PP

  == domain 3    score: 43.7 bits;  conditional E-value: 7.8e-14
   TIGR02323   24 lypGevlgivGesGsGkstllkalaarlladaGevtyesrsrelellalseaerrlllrtewGlvhqnprGlrmevsaGanigerllavgarhy..Gkiraaak..wlekv...eidaarikpaafsGGmqqrlqiarnlvtrprlvfm.eptGGlvsvqarll..llrglvrelglaviivth.lavarllaqrllvmkqGrvvesGlt.rvlpkh 228 
                  +  G+v+++ G sGsGkst+++ +     +++G+v  +  +    + +l+ +     lr + Glv q+p  +  +v+     g+    + ++       +a+a+   +e++      +  i+  ++sGG +qr+ iar+lv +p ++++ e t  l     +++   l  ++ + + ++i ++h l+ +r  a+ + v+++G+vve G    +l ++
  MMETSP1137-20121227|4380_1 1291 VPSGQVVALCGPSGSGKSTIIALVERFYDPQEGSVMLDGVD----VRTLNVS----WLRQQIGLVGQEPMLFVGTVAENIAYGKVEGCT-QQEIeeAATKANAHsfIVENLpqqYQTQVGIRGGKLSGGQKQRVAIARALVRKPAVLLLdEATSALDNESEKIVqaALDDMMAKQKKTTITIAHrLSTIRG-ADLIAVINRGKVVERGNHtSLLQQR 1497
                  4569**********************9********998766....5555433....456778888888885555544332222222222.22220022222222212222210022233457899********************999999*****66666665557788888899999999998999995.78999**********9752666443 PP

>> TIGR00956  3a01205: pleiotropic drug resistance family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.2   0.2   5.1e-09   3.1e-07     780     983 ..     541     741 ..     522     744 .. 0.71
   2 !   33.9   0.1   2.4e-11   1.4e-09     778     960 ..    1283    1465 ..    1243    1492 .. 0.74

  Alignments for each domain:
  == domain 1    score: 26.2 bits;  conditional E-value: 5.1e-09
   TIGR00956 780 devdGwvkPGkltALmGasGAGkttLlnvLaeRv...ttGvitegdrlvngrkldssFqR.siGYvqqqDlHletstvreaLrfsAylR.qpkevskkekneyveevikllelesyadAvvGvpGeGLnveqRkrltigveLvAkPklllFlDePtsGLDsqtawsivkllrkladaG.qailCtiHqPsailleeFDrLLllqkGGktv 983
                 +  + +v  G++ AL G+sG Gk t++n + eR      G +      v+ r+l+ s+ R +iG v q+ +     tv e + +        +e+  +  +      ik  +l +     vG  G+ L+  q++r++i+   v  P  +  lDe ts LD+ +  ++ k l  l  +  ++ +   H  s   + + D++ +++kG ++v
  MMETSP1137-20121227|4380_1 541 NGYSLHVPAGQVVALCGQSGSGKSTIINLV-ERFydpHRGAVH--FDGVDVRTLNVSWLRqQIGLVGQEPVL-FVGTVAENIAYGKKDGaTQEEIEAAAEMANAHGFIKD-KLPDGYGTQVGQGGSKLSGGQKQRVAIARAXVRXP-AVXLLDEATSALDTASERVVQKALDSLMAKRkRTTITIAHRLST--IRNADKIAVVHKG-QVV 741
                 555556778999999999999999999955.554222468888..444788889988877358999999884.5679999999987654144567777778888888875.45555567789999999999999999999999999.77789999999999999999999988755540444444466554..3566777777776.555 PP

  == domain 2    score: 33.9 bits;  conditional E-value: 2.4e-11
   TIGR00956  778 lLdevdGwvkPGkltALmGasGAGkttLlnvLaeRvttGvitegdrl...vngrkldssFqR.siGYvqqqDlHletstvreaLrfsAylR.qpkevskkekneyveevikllelesyadAvvGvpGeGLnveqRkrltigveLvAkPklllFlDePtsGLDsqtawsivkllrkl.adaGqailCtiH 960 
                  + +  + +v  G++ AL G sG Gk t++ +L eR      +eg ++   v+ r+l+ s+ R +iG v q+ + l   tv e + +  +     +e+ ++  +    + i + +l +  +  vG+ G  L+  q++r++i+  Lv kP  +l lDe ts LD  +  ++   l  + a++ ++ +   H
  MMETSP1137-20121227|4380_1 1283 ICNGYTLHVPSGQVVALCGPSGSGKSTII-ALVERFYDP--QEGSVMldgVDVRTLNVSWLRqQIGLVGQEPM-LFVGTVAENIAYGKVEGcTQQEIEEAATKANAHSFI-VENLPQQYQTQVGIRGGKLSGGQKQRVAIARALVRKP-AVLLLDEATSALDNESEKIVQAALDDMmAKQKKTTITIAH 1465
                  55666667888****************98.677885332..234444122677899999987369****9987.5578********976541344555544333333333.335667778899*************************.7788***********9999988777651444444444445 PP

>> TIGR00630  uvra: excinuclease ABC subunit A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.6   0.0    0.0016     0.099     627     651 ..     544     568 ..     537     575 .. 0.89
   2 !   19.3   0.0   9.7e-07   5.8e-05     821     900 ..     655     732 ..     633     747 .. 0.89
   3 !    7.7   0.0    0.0029      0.18     627     651 ..    1288    1312 ..    1283    1319 .. 0.88
   4 !   18.2   0.0     2e-06   0.00012     821     900 ..    1399    1476 ..    1383    1488 .. 0.87

  Alignments for each domain:
  == domain 1    score: 8.6 bits;  conditional E-value: 0.0016
   TIGR00630 627 dvsiplglltvitGvsgsGkstLin 651
                 ++++p g+++++ G sgsGkst+in
  MMETSP1137-20121227|4380_1 544 SLHVPAGQVVALCGQSGSGKSTIIN 568
                 6899*******************98 PP

  == domain 2    score: 19.3 bits;  conditional E-value: 9.7e-07
   TIGR00630 821 klGqpattLsGGeaqrvkLakeLskrstgktlyilDePttGLhfdDikkLlevlqrlvdk.GntvvviehnldviksaDyi 900
                 ++Gq    LsGG  qrv +a+      +  ++ +lDe t  L ++  + + + l++l++k   t + i h l  i++aD i
  MMETSP1137-20121227|4380_1 655 QVGQGGSKLSGGQKQRVAIARAX---VRXPAVXLLDEATSALDTASERVVQKALDSLMAKrKRTTITIAHRLSTIRNADKI 732
                 79******************865...567899**************9999999*99987626799**************87 PP

  == domain 3    score: 7.7 bits;  conditional E-value: 0.0029
   TIGR00630  627 dvsiplglltvitGvsgsGkstLin 651 
                  ++++p g+++++ G+sgsGkst+i 
  MMETSP1137-20121227|4380_1 1288 TLHVPSGQVVALCGPSGSGKSTIIA 1312
                  689999***************9985 PP

  == domain 4    score: 18.2 bits;  conditional E-value: 2e-06
   TIGR00630  821 klGqpattLsGGeaqrvkLakeLskrstgktlyilDePttGLhfdDikkLlevlqrlv.dkGntvvviehnldviksaDyi 900 
                  ++G     LsGG  qrv +a+ L ++    ++ +lDe t  L  +  k +   l+ ++ ++ +t + i h l  i+ aD i
  MMETSP1137-20121227|4380_1 1399 QVGIRGGKLSGGQKQRVAIARALVRK---PAVLLLDEATSALDNESEKIVQAALDDMMaKQKKTTITIAHRLSTIRGADLI 1476
                  67888889***************987...6799**********99877777788776516789****************97 PP

>> TIGR00455  apsK: adenylylsulfate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.0   0.0    0.0019      0.11      16      59 ..     548     590 ..     535     606 .. 0.80
   2 !   13.8   0.0   0.00012    0.0074      17      59 ..    1293    1334 ..    1283    1351 .. 0.83

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 0.0019
   TIGR00455  16 qksvvlWltGlsgsGkstianalekkLeekglrvevLDGDnvrh 59 
                   + v+ l G sgsGksti n +e+ +++    +  +DG  vr+
  MMETSP1137-20121227|4380_1 548 PAGQVVALCGQSGSGKSTIINLVER-FYDPHRGAVHFDGVDVRT 590
                 5688999*************98876.556666677788888875 PP

  == domain 2    score: 13.8 bits;  conditional E-value: 0.00012
   TIGR00455   17 ksvvlWltGlsgsGkstianalekkLeekglrvevLDGDnvrh 59  
                  ++ v+ l G+sgsGksti  al +++++    + +LDG  vr+
  MMETSP1137-20121227|4380_1 1293 SGQVVALCGPSGSGKSTII-ALVERFYDPQEGSVMLDGVDVRT 1334
                  688999************7.666677888888899*****997 PP

>> TIGR03238  dnd_assoc_3: DNA phosphorothioation-dependent restriction protein DptF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.9   0.0    0.0044      0.27      25      50 ..     543     568 ..     528     584 .. 0.84
   2 !    8.1   0.0    0.0039      0.23      28      50 ..    1290    1312 ..    1279    1326 .. 0.85

  Alignments for each domain:
  == domain 1    score: 7.9 bits;  conditional E-value: 0.0044
   TIGR03238  25 lnkelpsselllLCGssGdGkseiLa 50 
                 ++ + p+++++ LCG sG Gks i++
  MMETSP1137-20121227|4380_1 543 YSLHVPAGQVVALCGQSGSGKSTIIN 568
                 5667899****************986 PP

  == domain 2    score: 8.1 bits;  conditional E-value: 0.0039
   TIGR03238   28 elpsselllLCGssGdGkseiLa 50  
                  + ps++++ LCG sG Gks i+a
  MMETSP1137-20121227|4380_1 1290 HVPSGQVVALCGPSGSGKSTIIA 1312
                  6899*****************98 PP

>> TIGR00152  TIGR00152: dephospho-CoA kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.2   0.0    0.0036      0.21       1      23 [.     552     574 ..     552     577 .. 0.90
   2 ?    5.6   0.0     0.046       2.8       1      23 [.    1296    1318 ..    1296    1321 .. 0.88

  Alignments for each domain:
  == domain 1    score: 9.2 bits;  conditional E-value: 0.0036
   TIGR00152   1 iigltGgigsGKstvakilkdky 23 
                 +++l G+ gsGKst++++++  y
  MMETSP1137-20121227|4380_1 552 VVALCGQSGSGKSTIINLVERFY 574
                 79***************988766 PP

  == domain 2    score: 5.6 bits;  conditional E-value: 0.046
   TIGR00152    1 iigltGgigsGKstvakilkdky 23  
                  +++l G  gsGKst++ +++  y
  MMETSP1137-20121227|4380_1 1296 VVALCGPSGSGKSTIIALVERFY 1318
                  79*************99887655 PP

>> TIGR02322  phosphon_PhnN: phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   0.0     0.049       2.9       1      22 [.     550     571 ..     550     583 .. 0.84
   2 !    8.9   0.0    0.0041      0.25       1      22 [.    1294    1315 ..    1294    1327 .. 0.85

  Alignments for each domain:
  == domain 1    score: 5.4 bits;  conditional E-value: 0.049
   TIGR02322   1 grlilvvGpsGaGKDtlldlar 22 
                 g+++++ G sG+GK t+++l+ 
  MMETSP1137-20121227|4380_1 550 GQVVALCGQSGSGKSTIINLVE 571
                 78999************99765 PP

  == domain 2    score: 8.9 bits;  conditional E-value: 0.0041
   TIGR02322    1 grlilvvGpsGaGKDtlldlar 22  
                  g+++++ GpsG+GK t+++l+ 
  MMETSP1137-20121227|4380_1 1294 GQVVALCGPSGSGKSTIIALVE 1315
                  78999************99865 PP

>> TIGR02525  plasmid_TraJ: plasmid transfer ATPase TraJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   0.0     0.044       2.7     153     173 ..     554     574 ..     543     581 .. 0.83
   2 !    7.2   0.0    0.0075      0.46     153     174 ..    1298    1319 ..    1287    1326 .. 0.84

  Alignments for each domain:
  == domain 1    score: 4.7 bits;  conditional E-value: 0.044
   TIGR02525 153 licGetGsGkstllaaiyryi 173
                  +cG++GsGkst++  + r++
  MMETSP1137-20121227|4380_1 554 ALCGQSGSGKSTIINLVERFY 574
                 68***********99988887 PP

  == domain 2    score: 7.2 bits;  conditional E-value: 0.0075
   TIGR02525  153 licGetGsGkstllaaiyryil 174 
                   +cG++GsGkst++a + r++ 
  MMETSP1137-20121227|4380_1 1298 ALCGPSGSGKSTIIALVERFYD 1319
                  68**************999985 PP

>> TIGR00235  udk: uridine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   0.0     0.033         2       6      27 ..     550     571 ..     545     584 .. 0.81
   2 ?    5.8   0.0     0.035       2.1       5      28 ..    1293    1316 ..    1289    1329 .. 0.79

  Alignments for each domain:
  == domain 1    score: 5.8 bits;  conditional E-value: 0.033
   TIGR00235   6 tiiigiaGasgsGkttvaekiv 27 
                 + ++++ G sgsGk+t+ + + 
  MMETSP1137-20121227|4380_1 550 GQVVALCGQSGSGKSTIINLVE 571
                 579*************987654 PP

  == domain 2    score: 5.8 bits;  conditional E-value: 0.035
   TIGR00235    5 ktiiigiaGasgsGkttvaekive 28  
                  ++ ++++ G sgsGk+t+ + +  
  MMETSP1137-20121227|4380_1 1293 SGQVVALCGPSGSGKSTIIALVER 1316
                  5679*************9986654 PP

>> TIGR00929  VirB4_CagE: type IV secretion/conjugal transfer ATPase, VirB4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.0      0.02       1.2     440     457 ..     553     570 ..     543     572 .. 0.82
   2 ?    2.9   0.0     0.087       5.3     440     456 ..    1297    1313 ..    1287    1315 .. 0.84
   3 ?   -0.4   0.0      0.85        51     627     651 ..    1417    1441 ..    1416    1459 .. 0.82

  Alignments for each domain:
  == domain 1    score: 5.0 bits;  conditional E-value: 0.02
   TIGR00929 440 TlIfGptgsGKTvllnfl 457
                 ++++G++gsGK++++n++
  MMETSP1137-20121227|4380_1 553 VALCGQSGSGKSTIINLV 570
                 689************986 PP

  == domain 2    score: 2.9 bits;  conditional E-value: 0.087
   TIGR00929  440 TlIfGptgsGKTvllnf 456 
                  ++++Gp+gsGK++++ +
  MMETSP1137-20121227|4380_1 1297 VALCGPSGSGKSTIIAL 1313
                  579***********986 PP

  == domain 3    score: -0.4 bits;  conditional E-value: 0.85
   TIGR00929  627 ieealdgrrfliiiDEawkllgdpv 651 
                  i +al ++++++++DEa + l++++
  MMETSP1137-20121227|4380_1 1417 IARALVRKPAVLLLDEATSALDNES 1441
                  5678899****************96 PP

>> TIGR03263  guanyl_kin: guanylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.0      0.15       9.1       2      21 ..     551     570 ..     550     579 .. 0.84
   2 ?    7.3   0.0     0.012      0.73       2      21 ..    1295    1314 ..    1294    1326 .. 0.82

  Alignments for each domain:
  == domain 1    score: 3.7 bits;  conditional E-value: 0.15
   TIGR03263   2 klivisgpsGvGKstlvkkl 21 
                 +++ ++g sG GKst+++ +
  MMETSP1137-20121227|4380_1 551 QVVALCGQSGSGKSTIINLV 570
                 67889***********9865 PP

  == domain 2    score: 7.3 bits;  conditional E-value: 0.012
   TIGR03263    2 klivisgpsGvGKstlvkkl 21  
                  +++ ++gpsG GKst+++ +
  MMETSP1137-20121227|4380_1 1295 QVVALCGPSGSGKSTIIALV 1314
                  67889***********9765 PP

>> TIGR03598  GTPase_YsxC: ribosome biogenesis GTP-binding protein YsxC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   0.0    0.0077      0.47      18      38 ..     550     570 ..     540     573 .. 0.85
   2 ?    2.1   0.0      0.48        29      18      36 ..    1294    1312 ..    1282    1317 .. 0.82

  Alignments for each domain:
  == domain 1    score: 7.9 bits;  conditional E-value: 0.0077
   TIGR03598  18 lpeiafaGrSNvGKSsliNaL 38 
                 ++ +a+ G+S +GKS++iN +
  MMETSP1137-20121227|4380_1 550 GQVVALCGQSGSGKSTIINLV 570
                 5569***************75 PP

  == domain 2    score: 2.1 bits;  conditional E-value: 0.48
   TIGR03598   18 lpeiafaGrSNvGKSsliN 36  
                  ++ +a+ G S +GKS++i 
  MMETSP1137-20121227|4380_1 1294 GQVVALCGPSGSGKSTIIA 1312
                  5679************995 PP

>> TIGR00602  rad24: checkpoint protein rad24
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.0      0.23        14     105     129 ..     545     569 ..     538     575 .. 0.83
   2 ?    6.9   0.0    0.0068      0.41     109     129 ..    1293    1313 ..    1284    1322 .. 0.82

  Alignments for each domain:
  == domain 1    score: 1.8 bits;  conditional E-value: 0.23
   TIGR00602 105 LeskkkriLLitGPsGCgKsTviki 129
                 L +   ++  ++G sG gKsT+i  
  MMETSP1137-20121227|4380_1 545 LHVPAGQVVALCGQSGSGKSTIINL 569
                 5666678999************975 PP

  == domain 2    score: 6.9 bits;  conditional E-value: 0.0068
   TIGR00602  109 kkriLLitGPsGCgKsTviki 129 
                    ++  ++GPsG gKsT+i  
  MMETSP1137-20121227|4380_1 1293 SGQVVALCGPSGSGKSTIIAL 1313
                  568999***********9975 PP

>> TIGR03513  GldL_gliding: gliding motility-associated protein GldL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   0.2     0.014      0.82      74     158 ..     688     771 ..     684     782 .. 0.83
   2 ?    4.3   0.1      0.12       7.1      74     121 ..    1432    1479 ..    1429    1496 .. 0.82

  Alignments for each domain:
  == domain 1    score: 7.3 bits;  conditional E-value: 0.014
   TIGR03513  74 eaaaaeepeaarllsqkLdamlkeakvdaellaslgngikneekisdlseaidklaeatealegaaktlakmtdsyakqkedqeg 158
                 ea+ a +++++r++ + Ld+ +++ k  +  +a  ++ i+n +ki  + ++ +  + + ++l  ++++  +  +  +kq+e+ eg
  MMETSP1137-20121227|4380_1 688 EATSALDTASERVVQKALDSLMAKRKRTTITIAHRLSTIRNADKIAVVHKGQVVESGTYDKLLAIGQGG-RFYELAQKQEEENEG 771
                 5667778999**************************************999998888888888887775.555555555555555 PP

  == domain 2    score: 4.3 bits;  conditional E-value: 0.12
   TIGR03513   74 eaaaaeepeaarllsqkLdamlkeakvdaellaslgngikneekisdl 121 
                  ea+ a ++e+++++ + Ld+m++++k+ +  +a  ++ i+  + i  +
  MMETSP1137-20121227|4380_1 1432 EATSALDNESEKIVQAALDDMMAKQKKTTITIAHRLSTIRGADLIAVI 1479
                  567777899**************************9999976655554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1509 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       313  (0.0763042); expected 82.0 (0.02)
Passed bias filter:                      148  (0.03608); expected 82.0 (0.02)
Passed Vit filter:                        82  (0.0199902); expected 4.1 (0.001)
Passed Fwd filter:                        68  (0.0165773); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              68  [number of targets reported over threshold]
# CPU time: 2.36u 0.81s 00:00:03.17 Elapsed: 00:00:02.02
# Mc/sec: 986.00
//
Query:       MMETSP1137-20121227|4381_1  [L=167]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (167 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        97  (0.023647); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.17s 00:00:00.36 Elapsed: 00:00:00.26
# Mc/sec: 847.78
//
Query:       MMETSP1137-20121227|4382_1  [L=188]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.2e-24   82.2   0.0      9e-24   81.9   0.0    1.0  1  TIGR00231 small_GTP: small GTP-binding protein domain
    7.5e-07   26.3   0.0    1.4e-06   25.4   0.0    1.4  1  TIGR03594 GTPase_EngA: ribosome-associated GTPase EngA
    2.5e-06   24.9   0.1    1.1e-05   22.8   0.1    1.8  2  TIGR03596 GTPase_YlqF: ribosome biogenesis GTP-binding protein YlqF
    8.1e-05   19.4   0.0    0.00046   16.9   0.0    1.9  1  TIGR03918 GTP_HydF: [FeFe] hydrogenase H-cluster maturation GTPase HydF
     0.0002   18.9   0.1    0.00077   17.0   0.0    1.9  1  TIGR03598 GTPase_YsxC: ribosome biogenesis GTP-binding protein YsxC
     0.0002   18.4   0.0    0.00094   16.2   0.0    1.8  2  TIGR03597 GTPase_YqeH: ribosome biogenesis GTPase YqeH
    0.00079   16.3   0.0      0.048   10.4   0.0    2.1  2  TIGR03156 GTP_HflX: GTP-binding protein HflX
     0.0025   14.8   0.0      0.005   13.8   0.0    1.5  1  TIGR00450 mnmE_trmE_thdF: tRNA modification GTPase TrmE
  ------ inclusion threshold ------
      0.017   12.0   0.0       0.15    8.9   0.0    1.9  1  TIGR02729 Obg_CgtA: Obg family GTPase CgtA
      0.036   11.3   0.0      0.097    9.8   0.0    1.6  2  TIGR00436 era: GTP-binding protein Era


Domain annotation for each model (and alignments):
>> TIGR00231  small_GTP: small GTP-binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.9   0.0   2.2e-26     9e-24       4     157 ..      20     172 ..      18     177 .. 0.89

  Alignments for each domain:
  == domain 1    score: 81.9 bits;  conditional E-value: 2.2e-26
   TIGR00231   4 ikivivGhvdvGKstLlnsllknkisiteskpgvtrdyvteqieedGktykvnllDTaGqedfdairrlyvreverslevvdivilvldveeglekqtkeiiheakkkgvpiilvvnKiDlkd...dlktkvkslfaklnaep..iielsaetgknidk 157
                 ++i+ vG +++GKst++n+l+ +k +  e +p+v++++ t  +  +G+t  ++++D  Gq ++++++++y++ev+++++++d +   +++  ++ + +  + + +  kg+pi++++nK+Dl +    ++  ++ +++k + +p  i    a  g++i++
  MMETSP1137-20121227|4382_1  20 ARILCVGLDNSGKSTIINYLKPKKAAAAEVVPTVGFTVDT--FSKNGIT--FTVFDMSGQGRYRNLWEHYYKEVAGIIFCIDSTDK-IRMCVAKDELESLLSNLVG-KGIPILFFANKMDLPTaatPVDCVQQLELDKIGDKPwhIAASNALSGEGIEE 172
                 57999********************************999..9****55..***********************************.9999999566666666666.****************998899999999999999998666667777888776 PP

>> TIGR03594  GTPase_EngA: ribosome-associated GTPase EngA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.4   0.0   3.4e-09   1.4e-06       3     155 ..      22     176 ..      20     187 .. 0.66

  Alignments for each domain:
  == domain 1    score: 25.4 bits;  conditional E-value: 3.4e-09
   TIGR03594   3 vaivGrpNVGKStLfNrlvkkrkAive..dtpgvTRDrkygeaelkgkefiliDTgGleeeedelekeireqaelaieeadvilfvvdaregl.....teeDeeiaklLrkskkpvilvvNKvdnkkeeaeaaefyslGlge....vlaiSaeh...grgikdLlde 155
                 +  vG  N GKSt++N l  k++A  e   t g T D  +     +g +f++ D +G          + r+  e   +e   i+f +d ++++     ++e e++ + L  ++ p+++ +NK+d  ++++ +  + +l l++    ++ i+a++   g+gi++ ++ 
  MMETSP1137-20121227|4382_1  22 ILCVGLDNSGKSTIINYLKPKKAAAAEvvPTVGFTVDTFS----KNGITFTVFDMSGQG--------RYRNLWEHYYKEVAGIIFCIDSTDKIrmcvaKDELESLLSNLVGKGIPILFFANKMDLPTAATPVDCVQQLELDKigdkPWHIAASNalsGEGIEEGITW 176
                 788****************999887651155577777655....56778********84........4444455555666666666666665411111233467889999999***********9999888888888877642223677776651124555554444 PP

>> TIGR03596  GTPase_YlqF: ribosome biogenesis GTP-binding protein YlqF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.8   0.1   2.6e-08   1.1e-05     118     152 ..      19      53 ..       5      74 .. 0.83
   2 ?   -0.3   0.0       0.3   1.2e+02      48     111 ..     122     186 ..      83     188 .] 0.74

  Alignments for each domain:
  == domain 1    score: 22.8 bits;  conditional E-value: 2.6e-08
   TIGR03596 118 airalvvGiPNvGKStliNrlakkkvakvgnkpgv 152
                   r+l+vG+ N GKSt+iN l  kk+a ++  p v
  MMETSP1137-20121227|4382_1  19 GARILCVGLDNSGKSTIINYLKPKKAAAAEVVPTV 53 
                 579***********************999888877 PP

  == domain 2    score: -0.3 bits;  conditional E-value: 0.3
   TIGR03596  48 nkprlivlnkaDladpektkkwlkyfe..ekgkkalavnakkkkkvkkilkaikkllkekkeklka 111
                   p+l+  nk+Dl   ++  + ++++e  + g k + + a++  + + i + i+ l ++  ++ ++
  MMETSP1137-20121227|4382_1 122 GIPILFFANKMDLPTAATPVDCVQQLEldKIGDKPWHIAASNALSGEGIEEGITWLGEQMAKQ-QK 186
                 457888899999988888888888777656677788887777777777777777766666655.44 PP

>> TIGR03918  GTP_HydF: [FeFe] hydrogenase H-cluster maturation GTPase HydF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.0   1.1e-06   0.00046       8     131 ..      20     138 ..      13     187 .. 0.62

  Alignments for each domain:
  == domain 1    score: 16.9 bits;  conditional E-value: 1.1e-06
   TIGR03918   8 lhialfGrrNaGKSsliNaltgqdvai..vsdvpGtTtDpvekamEllplGpvvliDTaGldDegeLGelRvektrevlektdlallvvdaeaeleeleeelleelkekkipvivvlnkidlkeee 131
                  +i  +G  N+GKS++iN+l  +++a   v  + G T D+ +k+     +   +++D +G     +L e  ++    ++  +d +  +  +    ++  e+ll++l  k ip++  +nk+dl +++
  MMETSP1137-20121227|4382_1  20 ARILCVGLDNSGKSTIINYLKPKKAAAaeVVPTVGFTVDTFSKNG----I-TFTVFDMSGQGRYRNLWEHYYKEVAGIIFCIDSTDKIRMCV--AKDELESLLSNLVGKGIPILFFANKMDLPTAA 138
                 568899**************98887652377888*****999963....1.34556777766666666666666555544433332222222..22234456666667777777777777776655 PP

>> TIGR03598  GTPase_YsxC: ribosome biogenesis GTP-binding protein YsxC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.0   1.9e-06   0.00077      14      75 ..      15      76 ..       4     177 .. 0.77

  Alignments for each domain:
  == domain 1    score: 17.0 bits;  conditional E-value: 1.9e-06
   TIGR03598 14 pedklpeiafaGrSNvGKSsliNaLtnrkklartSktPGrTqlinffevne.elrlvDlPGYG 75
                 +  ++ i  +G  N+GKS++iN L  +k  a +   P    ++  f+ n  ++++ D+ G G
  MMETSP1137-20121227|4382_1 15 NKPGGARILCVGLDNSGKSTIINYLKPKK-AAAAEVVPTVGFTVDTFSKNGiTFTVFDMSGQG 76
                5566788999***************9877.455555566666677887766566777777766 PP

>> TIGR03597  GTPase_YqeH: ribosome biogenesis GTPase YqeH
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0   2.3e-06   0.00094     155     217 ..      19      77 ..       4     102 .. 0.81
   2 ?    0.1   0.0      0.19        77      90     153 ..     121     181 ..     107     187 .. 0.64

  Alignments for each domain:
  == domain 1    score: 16.2 bits;  conditional E-value: 2.3e-06
   TIGR03597 155 kkdvyvvGvtNVGKSsliNkllklnkgkkkvittSkfpgTTldlieipldkesvllDtpGiin 217
                 +  ++ vG  N GKS++iN l  ++    +v+ t  f+  T  ++ i +    +++D  G  +
  MMETSP1137-20121227|4382_1  19 GARILCVGLDNSGKSTIINYLKPKKAAAAEVVPTVGFTVDTFSKNGITF----TVFDMSGQGR 77 
                 577899****************99999999**9*999999999999988....7777777655 PP

  == domain 2    score: 0.1 bits;  conditional E-value: 0.19
   TIGR03597  90 kenkvllvvNKidllpksvklekikewlkkeakeeglkpvdillvsakkkkglkellelikkar 153
                 k  ++l+ +NK+dl   ++ ++ +++    e+ + g kp  i+  +a +++g++e ++++ ++ 
  MMETSP1137-20121227|4382_1 121 KGIPILFFANKMDLPTAATPVDCVQQL---ELDKIGDKPWHIAASNALSGEGIEEGITWLGEQM 181
                 456899999****75555555555543...4556666666677777777777777666665554 PP

>> TIGR03156  GTP_HflX: GTP-binding protein HflX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.4   0.0   0.00012     0.048     191     218 ..      21      48 ..      12      66 .. 0.83
   2 !    4.1   0.0    0.0097         4     273     316 ..      93     137 ..      84     180 .. 0.72

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 0.00012
   TIGR03156 191 tvalvGYTNaGKstllnaltkaevlaed 218
                 ++  vG  N+GKst++n l  +++ a++
  MMETSP1137-20121227|4382_1  21 RILCVGLDNSGKSTIINYLKPKKAAAAE 48 
                 6778***************998887765 PP

  == domain 2    score: 4.1 bits;  conditional E-value: 0.0097
   TIGR03156 273 lhvvDasde.eaeeqieaveevLeelgaeeipvllvlNkidklee 316
                 +  +D++d+ ++    ++ e++L++l  + ip+l   Nk+d+ + 
  MMETSP1137-20121227|4382_1  93 IFCIDSTDKiRMCVAKDELESLLSNLVGKGIPILFFANKMDLPTA 137
                 55667766623445677899*********************8763 PP

>> TIGR00450  mnmE_trmE_thdF: tRNA modification GTPase TrmE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.0   1.2e-05     0.005     208     331 ..      18     137 ..       3     171 .. 0.70

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 1.2e-05
   TIGR00450 208 dglklaivGktNvGKSSLlNallkkdraiVsdikGttRDvvEedleleGilvkllDtAGiReaadkvEklGiekslkaikeadlvlyvlDaskp....ltkdd..eliitlkkkkkdlllvlNKiDLael 331
                  g ++  vG  N GKS ++N l    +a  +++  t   +v+  +  +Gi++ ++D  G     +  E+          ke   +++ +D +        kd+  +l+++l  k  ++l++ NK+DL + 
  MMETSP1137-20121227|4382_1  18 GGARILCVGLDNSGKSTIINYLK-PKKAAAAEVVPTVGFTVD-TFSKNGITFTVFDMSGQGRYRNLWEHY--------YKEVAGIIFCIDSTDKirmcVAKDEleSLLSNLVGKGIPILFFANKMDLPTA 137
                 5789999*************765.556666666655555554.6999************98888877764........2223333333333222111122333336888888888899999999998744 PP

>> TIGR02729  Obg_CgtA: Obg family GTPase CgtA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   0.0   0.00036      0.15     161     299 ..      23     148 ..      20     182 .. 0.52

  Alignments for each domain:
  == domain 1    score: 8.9 bits;  conditional E-value: 0.00036
   TIGR02729 161 glvGlpnaGkStllsavsaakpkiadYpFtTlvPnLGvv.evee..eksfvlaDiPgliegasegagLGleFLkHiertrvllhlidlseedekdpvedleviekeLkkyseeLaek..pelvvlnkidlleeeeleellkelk 299
                   vGl n+GkSt+++ +   k+  a+     +vP++G   ++ +    +f++ D+ g      + ++L  ++ k +   + +++ id +++       ++ v ++eL++  ++L+ k  p l  +nk+dl+++++  +++++l+
  MMETSP1137-20121227|4382_1  23 LCVGLDNSGKSTIINYLKPKKAAAAE-----VVPTVGFTvDTFSknGITFTVFDMSG----QGRYRNLWEHYYKEV---AGIIFCIDSTDK------IRMCVAKDELESLLSNLVGKgiPILFFANKMDLPTAATPVDCVQQLE 148
                 5699*********9998766665554.....55666643122220023344444322....222333444443333...345666665555......23445556666666666665333445566666666655555555554 PP

>> TIGR00436  era: GTP-binding protein Era
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.0   0.00024     0.097       3      26 ..      22      45 ..      20      74 .. 0.82
   2 ?   -1.0   0.0      0.49     2e+02      79     122 ..      88     137 ..      82     182 .. 0.58

  Alignments for each domain:
  == domain 1    score: 9.8 bits;  conditional E-value: 0.00024
   TIGR00436  3 vailGrpnvGKSTLlNkllgqkis 26
                +  +G  n GKST++N l  +k +
  MMETSP1137-20121227|4382_1 22 ILCVGLDNSGKSTIINYLKPKKAA 45
                6679*************9887765 PP

  == domain 2    score: -1.0 bits;  conditional E-value: 0.49
   TIGR00436  79 evdlilfvvdsdeknke....d..ellleklqklkapvvlalnkldnkek 122
                 ev  i+f +ds++k       d  e ll +l    +p++   nk+d  + 
  MMETSP1137-20121227|4382_1  88 EVAGIIFCIDSTDKIRMcvakDelESLLSNLVGKGIPILFFANKMDLPTA 137
                 67778888888887532111121133555555555566666666665544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (188 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       158  (0.0385178); expected 82.0 (0.02)
Passed bias filter:                      152  (0.0370551); expected 82.0 (0.02)
Passed Vit filter:                        33  (0.00804486); expected 4.1 (0.001)
Passed Fwd filter:                        10  (0.00243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.31u 0.18s 00:00:00.49 Elapsed: 00:00:00.45
# Mc/sec: 551.42
//
Query:       MMETSP1137-20121227|4383_1  [L=349]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (349 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        64  (0.0156021); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.16s 00:00:00.43 Elapsed: 00:00:00.41
# Mc/sec: 1123.52
//
Query:       MMETSP1137-20121227|4385_1  [L=363]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      0.004   13.8   0.0          2    5.0   0.0    3.0  3  TIGR03606 non_repeat_PQQ: dehydrogenase, PQQ-dependent, s-GDH family
  ------ inclusion threshold ------
      0.019   11.9   0.0      0.083    9.7   0.0    1.8  2  TIGR03866 PQQ_ABC_repeats: PQQ-dependent catabolism-associated beta-propeller protein
      0.047   11.5   5.3       0.11   10.3   0.0    3.1  3  TIGR02276 beta_rpt_yvtn: 40-residue YVTN family beta-propeller repeat


Domain annotation for each model (and alignments):
>> TIGR03606  non_repeat_PQQ: dehydrogenase, PQQ-dependent, s-GDH family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.0     0.012        17      27      63 ..      86     125 ..      80     131 .. 0.77
   2 !    3.1   0.0    0.0054       7.4      27      63 ..     133     170 ..     110     183 .. 0.84
   3 !    5.0   0.0    0.0014         2     229     250 ..     184     205 ..     172     214 .. 0.67

  Alignments for each domain:
  == domain 1    score: 1.9 bits;  conditional E-value: 0.012
   TIGR03606  27 sgldkpwelvwGpdnqlwvteraa...geilrvnpetGek 63 
                 +++d+p  l+ Gpd  l+++  ++   + + r + e+Ge 
  MMETSP1137-20121227|4385_1  86 CAIDAPDTLLIGPDGALYLSSGTTpenSAVYRFDVESGEC 125
                 57899999*********99665541116788999999985 PP

  == domain 2    score: 3.1 bits;  conditional E-value: 0.0054
   TIGR03606  27 sgldkpwelvwGpdn.qlwvteraageilrvnpetGek 63 
                 sg+ +p+ l + pdn +l+v+  ++ ++lr +  tG+ 
  MMETSP1137-20121227|4385_1 133 SGMFRPYGLAFSPDNaYLYVASFKSDQLLRFDGITGDF 170
                 78889*********9679*************9999975 PP

  == domain 3    score: 5.0 bits;  conditional E-value: 0.0014
   TIGR03606 229 hrnpqGlaftpdgtlyaseqGp 250
                    p+ laf+pdg+ly + qG 
  MMETSP1137-20121227|4385_1 184 LNGPNILAFGPDGKLYVTTQGS 205
                 3445666666666666666665 PP

>> TIGR03866  PQQ_ABC_repeats: PQQ-dependent catabolism-associated beta-propeller protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.0   6.1e-05     0.083      35      82 ..     127     177 ..     108     203 .. 0.72
   2 ?   -0.1   0.0      0.06        81     127     143 ..     187     203 ..     179     213 .. 0.83

  Alignments for each domain:
  == domain 1    score: 9.7 bits;  conditional E-value: 6.1e-05
   TIGR03866  35 ktlkvGe...rPrGitlskdgkllyvcasdsdavqvldaeteevlkelpsG 82 
                   ++ G+   rP G+++s+d+  lyv++  sd++  +d  t + ++    G
  MMETSP1137-20121227|4385_1 127 GIFAQGSgmfRPYGLAFSPDNAYLYVASFKSDQLLRFDGITGDFVDVYAEG 177
                 55555433349**********************999999888777655555 PP

  == domain 2    score: -0.1 bits;  conditional E-value: 0.06
   TIGR03866 127 PeGlavsPdgklvvnts 143
                 P+ la  Pdgkl v+t 
  MMETSP1137-20121227|4385_1 187 PNILAFGPDGKLYVTTQ 203
                 77789999999999996 PP

>> TIGR02276  beta_rpt_yvtn: 40-residue YVTN family beta-propeller repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   8.4e-05      0.11       1      15 [.     145     159 ..     145     161 .. 0.93
   2 ?    2.8   0.1     0.019        26       4      16 ..     196     208 ..     194     209 .. 0.81
   3 ?   -4.1   0.3       2.7   3.7e+03      20      28 ..     224     232 ..     219     234 .. 0.42

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 8.4e-05
   TIGR02276   1 PdGtkvYVtNsgSns 15 
                 Pd++++YV++ +S+ 
  MMETSP1137-20121227|4385_1 145 PDNAYLYVASFKSDQ 159
                 9************96 PP

  == domain 2    score: 2.8 bits;  conditional E-value: 0.019
   TIGR02276   4 tkvYVtNsgSnsV 16 
                 +k+YVt +gS sV
  MMETSP1137-20121227|4385_1 196 GKLYVTTQGSYSV 208
                 69*******9666 PP

  == domain 3    score: -4.1 bits;  conditional E-value: 2.7
   TIGR02276  20 DtaTnkVia 28 
                 D + n ++a
  MMETSP1137-20121227|4385_1 224 DLSSNDNSA 232
                 333444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (363 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        48  (0.0117016); expected 82.0 (0.02)
Passed bias filter:                       44  (0.0107265); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.28u 0.14s 00:00:00.42 Elapsed: 00:00:00.41
# Mc/sec: 1168.59
//
Query:       MMETSP1137-20121227|4387_1  [L=300]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.3e-19   67.5   0.2    3.1e-19   67.1   0.1    1.2  1  TIGR00061 L21: ribosomal protein L21


Domain annotation for each model (and alignments):
>> TIGR00061  L21: ribosomal protein L21
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.1   0.1   7.6e-23   3.1e-19       1      99 [.     148     247 ..     148     249 .. 0.96

  Alignments for each domain:
  == domain 1    score: 67.1 bits;  conditional E-value: 7.6e-23
   TIGR00061   1 yAivkiggkqykveegetvkieklda.eegeeveldkvLlvkkgdevkiGkPyvegakveaevekegrgkKvkvvkyrrrKksrkkqGhRqeytkvkvkk 99 
                 +A++   g+qykv+ ++++  e+++  e+g +v+ ++vLlv  ++   iG+P v++a v   ve++  + Kv+++k++rrK++++ +G+R ++t ++v +
  MMETSP1137-20121227|4387_1 148 FAVMLLAGTQYKVTVDDMIVTERINGvEVGTTVRSESVLLVGSKGATVIGQPLVKDAFVDLAVEEHPLADKVIIFKKIRRKQYKRWKGYRAQLTVLRVLR 247
                 699999******************962789******************************************************************9976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (300 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       109  (0.0265724); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.23u 0.19s 00:00:00.42 Elapsed: 00:00:00.38
# Mc/sec: 1042.02
//
Query:       MMETSP1137-20121227|4388_1  [L=118]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (118 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        88  (0.0214529); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.14s 00:00:00.29 Elapsed: 00:00:00.27
# Mc/sec: 576.84
//
Query:       MMETSP1137-20121227|4389_1  [L=328]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      4e-42  142.6   1.8    2.8e-41  139.8   1.2    1.8  1  TIGR00817 tpt: Tpt phosphate/phosphoenolpyruvate translocator


Domain annotation for each model (and alignments):
>> TIGR00817  tpt: Tpt phosphate/phosphoenolpyruvate translocator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  139.8   1.2   6.8e-45   2.8e-41       5     299 ..       6     323 ..       2     326 .. 0.80

  Alignments for each domain:
  == domain 1    score: 139.8 bits;  conditional E-value: 6.8e-45
   TIGR00817   5 llfllwyvlnvyFnivnkkllkl...fhypvlktlvslavgvllellsw.ssilkkrlkiskallklllpvaivhtighvtsnvslskvavSfthtikalepifsvvlskfflgrefpltlylsLlpivlGvalasltelsfnllgflsamisniefvarnifsKkiltkk...........sldklnlyalisililfllspiafiveg.......lklltreflqais.......kvnvlklvtvslvaalgifHlyqqvafqllervspltysvgNvlKRvvvIvvSilffetkisflqvlGvilaiaGvflYskvkak.kk 299
                 ++++lwy+ n y+ni+nk   k+    +  ++ + +++avg ++ l+ w + +   ++k+s+ +++ l p++++ +  h  +  sls+ avSf  ++ka ep+f +++  ++ g+++  +  + L+pi++G+  as++el f ++++  a  +n++  +r    K+++ +                   ya+ +i + ++l+p  fi  +       + ++++   q i+       k    +l  ++++  l +f ly+ v++  l+++s +t+sv+N+ KR ++Iv  ++ f++ + +++ +G  +ai G+flY       k+
  MMETSP1137-20121227|4389_1   6 VYLGLWYAGNYYYNIYNKLSSKAgggTEFIFTLAWIQMAVGAVYSLFLWfAPEARSAPKMSFGQYMKLAPLGFFAAAAHAGAVFSLSAGAVSFAQIVKAAEPAFAAAVGYLVYGNTISKAKMVCLIPIIGGIWVASVQELDFTWMALAAAGGANVAAAFRGGENKRVMAEPglkeavagagnT------YAITTIWATIMLLPLIFISGEwdkrdqfIAMWEADXDQFIAmweadgtKGSAGNLRWNTIMSGL-TFYLYNEVSTIALKKISGVTHSVANTAKRAIIIVGCAIAFGESMAPIKMIGCSIAIGGTFLYAIADDLvKP 323
                 689**************7666652224455566679************834578999******************************************************************************************************999999999976777775544444......5555555555555555555331111112345555444444411000003333444445666666.9*************************************************************877655455 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (328 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       186  (0.0453437); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.28u 0.16s 00:00:00.44 Elapsed: 00:00:00.42
# Mc/sec: 1030.77
//
Query:       MMETSP1137-20121227|4390_1  [L=118]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (118 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        59  (0.0143832); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.25
# Mc/sec: 622.99
//
Query:       MMETSP1137-20121227|4392_1  [L=349]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (349 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        25  (0.00609459); expected 82.0 (0.02)
Passed bias filter:                       24  (0.0058508); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.17s 00:00:00.41 Elapsed: 00:00:00.34
# Mc/sec: 1354.83
//
Query:       MMETSP1137-20121227|4393_1  [L=847]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.1e-07   25.0   0.1    1.2e-06   24.5   0.0    1.1  1  TIGR03903 TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
     0.0085   13.2   0.0      0.013   12.6   0.0    1.2  1  TIGR00569 ccl1: cyclin ccl1


Domain annotation for each model (and alignments):
>> TIGR03903  TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.5   0.0   5.7e-10   1.2e-06      34     240 ..     253     468 ..     244     479 .. 0.64

  Alignments for each domain:
  == domain 1    score: 24.5 bits;  conditional E-value: 5.7e-10
   TIGR03903  34 rLshPnivaL.lDsGeaed...gllFavFeyveGr.......tlrev.L.aadGaLpaaetgrLmlqvLDalaaahdaGvvhRDLkPqnimvsaadves...hakvLDFGigaLlpgvedadeatltrttevlGsPaYaaPe...qLRgepvtaksDlYaWGLivleCLtGkrvvqG.asvaevlykqLsPvdvslPsaiaghpLgevLRkalnkdvrqRaasaeal 240
                 +++hP + aL l + + ++     + a Fe+ve         tl       +  aLp+      m q L ala++h++Gv h +L P  ++  a d ++     k+ DFG +     + +        ++e+   P+ a+Pe     +     ++ Dl+a G ++ e   G+r  +    ++e+   + +  + ++P   +  +  ++LRk ++ ++ +R ++aeal
  MMETSP1137-20121227|4393_1 253 NMHHPCVAALqLVEAKHDPskgTWVHAAFEHVETSlqkivygTLERTsHtVTGRALPPLMLRSFMYQLLSALACSHARGVAHGNLAPYRVLARALDASKgeyLLKLADFGFSPP---AAA------LCNEELPIRPSRASPElhaEHKRKRYGPANDLWALGTVYSEVACGNRDPNVyMMIQELEAVEEGALEAAMPMLCENGR--DLLRKLMRAEPTERITAAEAL 468
                 57777776553334443331214688999998864222222233322121344589999999****************************987766655111567779998743...333......233455556666666611112333457888888888888888888864443134566666666677777777766654..788888888888888888887 PP

>> TIGR00569  ccl1: cyclin ccl1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.6   0.0   6.4e-06     0.013      63     157 ..     531     622 ..     507     635 .. 0.87

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 6.4e-06
   TIGR00569  63 lldlasalkptlPkevvgtAilyFkRFyLnnsvmeydPkiivltcvFlAcKveefnv.sieqFvknlketrekaleevLeyEllliqsLkfsLlvh 157
                 l ++++++k  +P+++   A+ + +R+ +   v     + i + ++ lAcK ee  +  +++F+    +    +lee++  E+++++ L+ +L v 
  MMETSP1137-20121227|4393_1 531 LAVVSHKFK-FVPRSIQ-LAVDFMRRYMMAAPVSRKRLQLIGIGSLCLACKHEEVMIpNMNDFIFICDNA--YTLEELMLAEVEILNTLQMQLHVP 622
                 667889999.8999986.79************************************94578898877766..8899*************9999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (847 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        92  (0.0224281); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.57u 0.18s 00:00:00.75 Elapsed: 00:00:00.52
# Mc/sec: 2149.90
//
Query:       MMETSP1137-20121227|4394_1  [L=373]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (373 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       150  (0.0365675); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.16s 00:00:00.44 Elapsed: 00:00:00.35
# Mc/sec: 1406.63
//
Query:       MMETSP1137-20121227|4395_1  [L=100]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (100 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        64  (0.0156021); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.42
# Mc/sec: 314.26
//
Query:       MMETSP1137-20121227|4396_1  [L=86]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (86 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        19  (0.00463189); expected 82.0 (0.02)
Passed bias filter:                       19  (0.00463189); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.28
# Mc/sec: 391.42
//
Query:       MMETSP1137-20121227|4397_1  [L=191]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.9e-48  161.1   0.0    7.3e-48  160.8   0.0    1.0  1  TIGR00384 dhsB: succinate dehydrogenase and fumarate reductase iron-sulfur protein
    0.00043   16.3   0.4    0.00055   15.9   0.3    1.1  1  TIGR03311 Se_dep_Molyb_1: selenium-dependent molybdenum hydroxylase 1
     0.0027   15.0   0.5     0.0039   14.5   0.3    1.2  1  TIGR03198 pucE: xanthine dehydrogenase E subunit
  ------ inclusion threshold ------
       0.01   13.6   0.3      0.022   12.5   0.0    1.6  2  TIGR03193 4hydroxCoAred: 4-hydroxybenzoyl-CoA reductase, gamma subunit


Domain annotation for each model (and alignments):
>> TIGR00384  dhsB: succinate dehydrogenase and fumarate reductase iron-sulfur protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  160.8   0.0   7.1e-51   7.3e-48       1     138 [.      44     179 ..      44     184 .. 0.97

  Alignments for each domain:
  == domain 1    score: 160.8 bits;  conditional E-value: 7.1e-51
   TIGR00384   1 vlRfnpdvdekphlesyevevdektlsvLdaLeqikkeqdaslafRksCReaiCGscavkvngkpkLACktkvedleqllkliieplanlpvikDLvvdleefiekleaikpYlirkeqkeeeeellqtpeeleklke 138
                 ++R+npd++e+p++++ye++++e+  +vLdaL +ik+e+d++l+fR+sCRe+iCGsc++++ng ++LAC +k++d ++++k  i+pl+++ v kDLv d+++f+e+++++kp+l+ +e   +++el q+ e+++kl+ 
  MMETSP1137-20121227|4397_1  44 IYRWNPDTNERPRMQDYEIDLNECGPMVLDALIKIKNEEDPTLTFRRSCREGICGSCSMNINGTNTLACLCKISDVKETTK--IYPLPHMYVLKDLVPDMSHFYEQHKSVKPFLVVEEGADTSKELYQSKEDRAKLDG 179
                 79*************************************************************************998777..***************************************************9986 PP

>> TIGR03311  Se_dep_Molyb_1: selenium-dependent molybdenum hydroxylase 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.3   5.3e-07   0.00055      27      62 ..      84     119 ..      67     129 .. 0.81

  Alignments for each domain:
  == domain 1    score: 15.9 bits;  conditional E-value: 5.3e-07
   TIGR03311  27 eltsvknGcaeGacGactvlvnGkavkaclftvekl 62 
                    + +  c eG cG+c + +nG  + acl+++  +
  MMETSP1137-20121227|4397_1  84 PTLTFRRSCREGICGSCSMNINGTNTLACLCKISDV 119
                 33456789************************9876 PP

>> TIGR03198  pucE: xanthine dehydrogenase E subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.3   3.8e-06    0.0039      33      63 ..      86     115 ..      65     128 .. 0.80

  Alignments for each domain:
  == domain 1    score: 14.5 bits;  conditional E-value: 3.8e-06
   TIGR03198  33 ltgtkvscgigrcgacavlvdgkvanacllm 63 
                 l   ++sc  g cg+c++ ++g  + acl  
  MMETSP1137-20121227|4397_1  86 L-TFRRSCREGICGSCSMNINGTNTLACLCK 115
                 3.3589**********************975 PP

>> TIGR03193  4hydroxCoAred: 4-hydroxybenzoyl-CoA reductase, gamma subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0      0.65   6.7e+02      54      69 ..       9      24 ..       5      41 .. 0.59
   2 ?   12.5   0.0   2.2e-05     0.022      35      66 ..      89     120 ..      69     138 .. 0.85

  Alignments for each domain:
  == domain 1    score: -2.0 bits;  conditional E-value: 0.65
   TIGR03193 54 prlacltlavrvegkk 69
                +++a +tl +rv+ ++
  MMETSP1137-20121227|4397_1  9 TAMAAATLLHRVAPRT 24
                4555555556555554 PP

  == domain 2    score: 12.5 bits;  conditional E-value: 2.2e-05
   TIGR03193  35 kqgcdggecgactvlvdgeprlacltlavrve 66 
                 ++ c  g cg+c++ ++g  +lacl     v+
  MMETSP1137-20121227|4397_1  89 RRSCREGICGSCSMNINGTNTLACLCKISDVK 120
                 678*********************98776665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (191 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        77  (0.0187713); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.20u 0.13s 00:00:00.33 Elapsed: 00:00:00.32
# Mc/sec: 787.81
//
Query:       MMETSP1137-20121227|4398_1  [L=472]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (472 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.16s 00:00:00.47 Elapsed: 00:00:00.35
# Mc/sec: 1779.97
//
Query:       MMETSP1137-20121227|4399_1  [L=132]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (132 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        79  (0.0192589); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.18s 00:00:00.36 Elapsed: 00:00:00.28
# Mc/sec: 600.78
//
Query:       MMETSP1137-20121227|4400_1  [L=432]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (432 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       130  (0.0316919); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.16s 00:00:00.46 Elapsed: 00:00:00.43
# Mc/sec: 1326.03
//
Query:       MMETSP1137-20121227|4401_1  [L=490]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.2e-07   28.7   0.0    2.3e-07   27.8   0.0    1.4  2  TIGR00877 purD: phosphoribosylamine--glycine ligase
    7.1e-05   19.7   0.0    0.00016   18.6   0.0    1.6  1  TIGR01205 D_ala_D_alaTIGR: D-alanine--D-alanine ligase
    0.00019   18.1   0.0    0.00032   17.3   0.0    1.2  1  TIGR03909 pyrrolys_PylC: pyrrolysine biosynthesis protein PylC
    0.00049   17.4   0.0    0.00071   16.8   0.0    1.2  1  TIGR00768 rimK_fam: alpha-L-glutamate ligases, RimK family
  ------ inclusion threshold ------
      0.035    9.6   0.0      0.047    9.1   0.0    1.1  1  TIGR02712 urea_carbox: urea carboxylase


Domain annotation for each model (and alignments):
>> TIGR00877  purD: phosphoribosylamine--glycine ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.8   0.0   2.8e-10   2.3e-07     111     220 ..     177     289 ..     153     298 .. 0.87
   2 ?   -3.6   0.0      0.97     8e+02     281     292 ..     343     356 ..     330     360 .. 0.70

  Alignments for each domain:
  == domain 1    score: 27.8 bits;  conditional E-value: 2.8e-10
   TIGR00877 111 llkkagiptaeyevftepeeakeyieekgap..aivvkadgLaaGKgvivvkdeeealkaveeil.ekkkfgeagekvviEefleGeEvsllalvdgktvvplplaqdhkrvl 220
                  +++ g+p a+ +   ++ +++e++ +++ +  ++vvk++  a+  gv++++++ee ++a e++   ++++g  + +v++ e+l+G+E  + ++    +++ +++ +  krv+
  MMETSP1137-20121227|4401_1 177 AVRAKGLPAAHQKLCRNMSDVEEFLANYNPEpfKAVVKPNDGAGSDGVSICNSREEVIEAFERLHgATNALGLENGSVLLQEYLRGDEYVVDTVSRDGEHKCVAIWKYDKRVF 289
                 56778899999999*************99877899***************************997346788999999*************99998877777777777777776 PP

  == domain 2    score: -3.6 bits;  conditional E-value: 0.97
   TIGR00877 281 ge..pkvlefnvRf 292
                 +   p ++e n+R 
  MMETSP1137-20121227|4401_1 343 KPrgPVLIEANCRL 356
                 324599******96 PP

>> TIGR01205  D_ala_D_alaTIGR: D-alanine--D-alanine ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.0     2e-07   0.00016      96     217 ..     160     286 ..      67     292 .. 0.77

  Alignments for each domain:
  == domain 1    score: 18.6 bits;  conditional E-value: 2e-07
   TIGR01205  96 sgvlaSalsmdKlltKlllkalglpvadyavlerkeekseeaekekleklglpvivKpareGSSvGvskvkseeeleealeeafeyde.......evlveeaikgrelevsvlekeealpiieiveeke 217
                 +g++ S l  dK    + ++a glp a+ ++   ++ ++ e+  ++ +   + ++vKp++   S Gvs+++s+ee+ ea+e+    ++       +vl++e++ g+e+ v ++ ++   ++++i + ++
  MMETSP1137-20121227|4401_1 160 NGTALSNLRRDKFEQTEAVRAKGLPAAHQKLC--RNMSDVEEFLANYNPEPFKAVVKPNDGAGSDGVSICNSREEVIEAFERLHGATNalglengSVLLQEYLRGDEYVVDTVSRDGEHKCVAIWKYDK 286
                 5666777888***************9987755..333333445568889999*************************9998755543311111127888888999999998888888777777766555 PP

>> TIGR03909  pyrrolys_PylC: pyrrolysine biosynthesis protein PylC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.0     4e-07   0.00032     125     188 ..     209     281 ..     202     291 .. 0.76

  Alignments for each domain:
  == domain 1    score: 17.3 bits;  conditional E-value: 4e-07
   TIGR03909 125 fPvlvkPscesssegvriindrkeleel...lkle.s.....ednlvveeyleGesvsleviGdkgnyavvki 188
                 f  +vkP ++++s gv i n+r+e+ e    l+   +     + +++++eyl+G+ + ++ +  +g+++ v i
  MMETSP1137-20121227|4401_1 209 FKAVVKPNDGAGSDGVSICNSREEVIEAferLHGAtNalgleNGSVLLQEYLRGDEYVVDTVSRDGEHKCVAI 281
                 6789******************9965542222322112222145789***************99999988876 PP

>> TIGR00768  rimK_fam: alpha-L-glutamate ligases, RimK family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0   8.7e-07   0.00071      69     171 ..     153     261 ..      97     268 .. 0.80

  Alignments for each domain:
  == domain 1    score: 16.8 bits;  conditional E-value: 8.7e-07
   TIGR00768  69 eslGveviNssqaienagdKllssalLakaglplpktlvagseeeakklieeig...fPvvlKpvfGswGklvvlvedkqeaekllealeqlke....kykvflvQeyik 171
                 e+lG+++ N +   +  +dK+  + ++ ++glp  ++ +  +  ++++++ + +   f +v+Kp  G   ++v+ ++ ++e+ +  e l+   +    +  ++l+Qey  
  MMETSP1137-20121227|4401_1 153 EALGCRT-NGTALSNLRRDKFEQTEAVRAKGLPAAHQKLCRNMSDVEEFLANYNpepFKAVVKPNDGAGSDGVSICNSREEVIEAFERLHGATNalglENGSVLLQEYLR 261
                 4556654.7777777789*************************99999999999999*********************99887777766655541112456789999975 PP

>> TIGR02712  urea_carbox: urea carboxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   0.0   5.7e-05     0.047     151     225 ..     209     284 ..     172     288 .. 0.84

  Alignments for each domain:
  == domain 1    score: 9.1 bits;  conditional E-value: 5.7e-05
   TIGR02712 151 yPvmlkstaGGGGiGlqkvdsaeeleeafesvkrlgesf.fsdagvflekfvekarhvevqilGdgkGkvvalger 225
                 +  ++k   G G  G++ ++s+ee+ eafe+++  +++  +++  v l+++++   +v   +  dg+ k va+ + 
  MMETSP1137-20121227|4401_1 209 FKAVVKPNDGAGSDGVSICNSREEVIEAFERLHGATNALgLENGSVLLQEYLRGDEYVVDTVSRDGEHKCVAIWKY 284
                 667899**************************9988765378888*************99999****999998665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (490 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       141  (0.0343735); expected 82.0 (0.02)
Passed bias filter:                      129  (0.0314481); expected 82.0 (0.02)
Passed Vit filter:                        21  (0.00511945); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.43u 0.18s 00:00:00.61 Elapsed: 00:00:00.45
# Mc/sec: 1437.21
//
Query:       MMETSP1137-20121227|4402_1  [L=214]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (214 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        41  (0.00999512); expected 82.0 (0.02)
Passed bias filter:                       38  (0.00926377); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.15s 00:00:00.32 Elapsed: 00:00:00.32
# Mc/sec: 882.68
//
Query:       MMETSP1137-20121227|4404_1  [L=294]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (294 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        47  (0.0114578); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.15s 00:00:00.38 Elapsed: 00:00:00.35
# Mc/sec: 1108.71
//
Query:       MMETSP1137-20121227|4405_1  [L=254]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (254 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       123  (0.0299854); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.17s 00:00:00.39 Elapsed: 00:00:00.44
# Mc/sec: 761.94
//
Query:       MMETSP1137-20121227|4406_1  [L=308]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (308 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        60  (0.014627); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.12s 00:00:00.36 Elapsed: 00:00:00.37
# Mc/sec: 1098.72
//
Query:       MMETSP1137-20121227|4407_1  [L=69]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (69 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        41  (0.00999512); expected 82.0 (0.02)
Passed bias filter:                       41  (0.00999512); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.54
# Mc/sec: 168.65
//
Query:       MMETSP1137-20121227|4408_1  [L=218]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (218 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       125  (0.0304729); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.13s 00:00:00.33 Elapsed: 00:00:00.35
# Mc/sec: 822.10
//
Query:       MMETSP1137-20121227|4409_1  [L=360]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   1.5e-106  354.0   0.4   1.7e-106  353.8   0.2    1.0  1  TIGR00747 fabH: 3-oxoacyl-[acyl-carrier-protein] synthase III
    6.3e-19   66.2   0.8    1.4e-08   32.2   0.0    2.3  2  TIGR00748 HMG_CoA_syn_Arc: putative hydroxymethylglutaryl-CoA synthase
    1.9e-06   24.7   0.0    4.8e-05   20.1   0.0    2.0  2  TIGR01835 HMG-CoA-S_prok: hydroxymethylglutaryl-CoA synthase
     0.0038   14.0   0.7      0.023   11.4   0.1    2.0  2  TIGR01930 AcCoA-C-Actrans: acetyl-CoA C-acetyltransferase


Domain annotation for each model (and alignments):
>> TIGR00747  fabH: 3-oxoacyl-[acyl-carrier-protein] synthase III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  353.8   0.2  1.6e-109  1.7e-106       3     322 .]      34     359 ..      32     359 .. 0.95

  Alignments for each domain:
  == domain 1    score: 353.8 bits;  conditional E-value: 1.6e-109
   TIGR00747   3 akilsvgsylPekvltnadlekmvdtsDeWivtRtGikeRriAaddetssslgveaakkAieaAklskddidliivattspdlafPsaaalvqakLgikdipafDlsAaCaGflYalsvakayvesGkyktvLvvgaeklsslvdlkDRgtcvlFgDGagavvvgeseeege..ilsvelgadgekgellrlpaaekr.....aekekeekskfivmeGkevFklAvrkleeaveevleaaglkkedidllvPHqAnlRiiealakklelkeekvvktvekygntsAasiplaldelleegkikkgdlllleafGgGltwgaalvrf 322
                 +++++vgs  P+ v++nadle +vdtsDeWi++RtGi+ R++ ++ e+ + l+v++ ++A+e+A++ +++++l+i+at spd  f  aa+ +  ++g+ +++afDl+AaC+Gfl+++++a+++++ G+ykt++v+ga+ ls+ vd+ DR+tcvlFgDGagavv+ ++e++ e  +l +e++++g     l l+ + ++      ++ +++  + i+m+Gkev+k+A   + ++ +e++e a+++ ++id+l+ HqAn+Ri+e +akkl + +ekv+ ++++ygntsA siplald++++egk+k+gdl+ + +fG+Gl+wg+a++r+
  MMETSP1137-20121227|4409_1  34 SRLVGVGSCAPSLVVSNADLEAIVDTSDEWISKRTGIRRRHLLGPGESLTGLAVTSVRNALENAGIGAEEVELVIMATSSPDDLFGDAACIA-REVGAVNAVAFDLTAACSGFLFGVNTASQFLHNGAYKTAVVIGADALSRWVDWGDRNTCVLFGDGAGAVVMRAAESDAEcgVLGFEMHSNGAGRCDLNLEYSGTEkdlasIAQVTTGAYSPIAMNGKEVYKFATSMVPQVLTEAMESAEVTADQIDWLLLHQANIRIMETVAKKLGIPMEKVISNLDEYGNTSAGSIPLALDAAVREGKVKPGDLIAVAGFGAGLSWGSAVIRW 359
                 789************************************************************************************99965.578********************************************************************9999888777**********998888777655443454466777899999***************************************************************************************************************98 PP

>> TIGR00748  HMG_CoA_syn_Arc: putative hydroxymethylglutaryl-CoA synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.2   0.2   1.4e-11   1.4e-08       4     141 ..      36     171 ..      33     196 .. 0.92
   2 !   32.2   0.0   1.4e-11   1.4e-08     216     298 ..     268     350 ..     254     358 .. 0.87

  Alignments for each domain:
  == domain 1    score: 32.2 bits;  conditional E-value: 1.4e-11
   TIGR00748   4 ivgygayipkyrikveeiarvwgddpeaiskgllveekavpgldedtatiaveaarnalkrakidpkdigavyvgseskpyavkptativaeaieatpdltaadlefackagtagiqaalglvesglikyglaigadt 141
                 +vg g+  p+  + + ++  + +   e isk   +  + + g+ e    +av + rnal  a i  ++++ v +   s p  +   a+ +a  ++a     a dl  ac     g+++a  +++ g  k ++ igad+
  MMETSP1137-20121227|4409_1  36 LVGVGSCAPSLVVSNADLEAIVDTSDEWISKRTGIRRRHLLGPGESLTGLAVTSVRNALENAGIGAEEVELVIMA-TSSPDDLFGDAACIAREVGAVNA-VAFDLTAACSGFLFGVNTASQFLHNGAYKTAVVIGADA 171
                 79********************************************************************99876.577999999999*******9865.699**********************************7 PP

  == domain 2    score: 32.2 bits;  conditional E-value: 1.4e-11
   TIGR00748 216 glmeklglkaedfdyavfhqpngkfylkaarilglekekvkpglltpvigntysgatpvglsavld..vaepgerilavsygsga 298
                   me   ++a++ d+ ++hq n +++  +a++lg++ ekv   l     gnt +g++p+ l a +    ++pg+ i +  +g+g 
  MMETSP1137-20121227|4409_1 268 EAMESAEVTADQIDWLLLHQANIRIMETVAKKLGIPMEKVISNL--DEYGNTSAGSIPLALDAAVRegKVKPGDLIAVAGFGAGL 350
                 4699999*********************************9988..578************9887523689*****9999*9995 PP

>> TIGR01835  HMG-CoA-S_prok: hydroxymethylglutaryl-CoA synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.0   4.7e-08   4.8e-05      13     158 ..      46     196 ..      38     209 .. 0.77
   2 ?    2.5   0.0     0.011        11     262     307 ..     305     349 ..     285     352 .. 0.86

  Alignments for each domain:
  == domain 1    score: 20.1 bits;  conditional E-value: 4.7e-08
   TIGR01835  13 yyldlsaLaeargvdpeklskgigqkklavpsideDivtlAasAakailden..dkskidivlvatEsgiDqskaaavyvhrllglspiarsvelkeACygAtaalqlakshvarspdkkvlviasD.iakY....eletpgEatqGAgavAl 158
                 +++   +L +  ++  e +sk  g ++  + ++ e    lA + +++ l+++  + +++++v++at s  D    aa  + r +g   +a +++l  AC g   ++++a + +++   k  +vi++D ++++    +++t      GAgav +
  MMETSP1137-20121227|4409_1  46 LVVSNADLEAIVDTSDEWISKRTGIRRRHLLGPGESLTGLAVTSVRNALENAgiGAEEVELVIMATSSPDDLFGDAAC-IAREVGA-VNAVAFDLTAACSGFLFGVNTASQFLHNGAYKTAVVIGADaLSRWvdwgDRNTCVLFGDGAGAVVM 196
                 555555565666666666666666666667777888889************98889**********887666665555.5555554.46789**********************************954555444467788888899999987 PP

  == domain 2    score: 2.5 bits;  conditional E-value: 0.011
   TIGR01835 262 eesiaynrevGnlYtgslyLslaslLenaeedltGekigllsYGsG 307
                 e+ i   +e Gn+  gs+ L+l + + +  + + G+ i++  +G+G
  MMETSP1137-20121227|4409_1 305 EKVISNLDEYGNTSAGSIPLALDAAVREG-KVKPGDLIAVAGFGAG 349
                 5667777899*************999888.999***********98 PP

>> TIGR01930  AcCoA-C-Actrans: acetyl-CoA C-acetyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.4   0.1   2.3e-05     0.023      24     118 ..      85     177 ..      78     201 .. 0.83
   2 ?    0.7   0.0      0.04        41     280     325 ..     255     301 ..     214     324 .. 0.65

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 2.3e-05
   TIGR01930  24 LlaavikelleragldpekidevilGnvlqageqaniaReaalaaglpesvpaltvnrvCaSglqAvalaaqkikaGeadvvvaGGvEsmSrvpi 118
                 L+++ ++++le ag+ +e+++ vi++++ +    +  a  +a + g   +  a++++ +C+  l  v++a q ++ G+++++v+ G++ +Sr   
  MMETSP1137-20121227|4409_1  85 LAVTSVRNALENAGIGAEEVELVIMATSSPDDL-FGDAACIAREVGA-VNAVAFDLTAACSGFLFGVNTASQFLHNGAYKTAVVIGADALSRWVD 177
                 889999*******************99887652.3333333344443.457799*************************************9765 PP

  == domain 2    score: 0.7 bits;  conditional E-value: 0.04
   TIGR01930 280 eemglgpv.pAiekaLkkaglsisdidlvEinEAFAaqvlavekelg 325
                  ++ ++ v +  ++a++ a++++++id+  ++ A    + +v+k+lg
  MMETSP1137-20121227|4409_1 255 YKFATSMVpQVLTEAMESAEVTADQIDWLLLHQANIRIMETVAKKLG 301
                 34444333034567777778888888887777777766666666666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (360 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       154  (0.0375427); expected 82.0 (0.02)
Passed bias filter:                      112  (0.0273038); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.32u 0.17s 00:00:00.49 Elapsed: 00:00:00.42
# Mc/sec: 1131.34
//
Query:       MMETSP1137-20121227|4410_1  [L=465]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   1.2e-119  397.4   0.4   1.4e-119  397.2   0.2    1.0  1  TIGR00483 EF-1_alpha: translation elongation factor EF-1, subunit alpha
      1e-47  161.0   0.0      2e-47  159.9   0.0    1.5  1  TIGR02034 CysN: sulfate adenylyltransferase, large subunit
    5.7e-40  135.1   0.1    2.3e-39  133.1   0.1    1.9  1  TIGR00485 EF-Tu: translation elongation factor Tu
    2.5e-29  100.2   1.1    7.3e-15   52.5   0.5    3.1  2  TIGR00475 selB: selenocysteine-specific translation elongation factor
    3.9e-17   60.4   0.2    3.9e-15   53.8   0.0    2.8  3  TIGR03680 eif2g_arch: translation initiation factor 2, gamma subunit
    1.7e-15   54.1   0.0    6.1e-15   52.3   0.0    1.8  1  TIGR01394 TypA_BipA: GTP-binding protein TypA/BipA
    5.6e-13   45.9   0.0    2.4e-08   30.6   0.0    2.6  2  TIGR01393 lepA: GTP-binding protein LepA
    7.8e-12   41.9   0.1    1.3e-11   41.2   0.1    1.3  1  TIGR00484 EF-G: translation elongation factor G
      1e-07   29.7   0.2    1.5e-06   25.9   0.1    2.8  2  TIGR00231 small_GTP: small GTP-binding protein domain
      8e-07   25.7   0.0    1.4e-06   24.8   0.0    1.4  1  TIGR00503 prfC: peptide chain release factor 3
    0.00048   16.2   0.0     0.0011   14.9   0.0    1.5  2  TIGR00490 aEF-2: translation elongation factor aEF-2
     0.0019   14.8   2.3     0.0085   12.7   0.0    2.7  3  TIGR00487 IF-2: translation initiation factor IF-2


Domain annotation for each model (and alignments):
>> TIGR00483  EF-1_alpha: translation elongation factor EF-1, subunit alpha
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  397.2   0.2    4e-122  1.4e-119       3     424 ..       4     463 ..       1     465 [] 0.92

  Alignments for each domain:
  == domain 1    score: 397.2 bits;  conditional E-value: 4e-122
   TIGR00483   3 kekehlnvafighvdsgkstlvgrllyeagaiderlleklkkeaeekgkasfefayvldklkeerergvtidvahkkfetdkyevtivdapghrdfiknmitgasqadaavlvvavddgele...........vqpqtrehvllartlgikqlivainkmdsvn...ydeekfeelkkevsellkkvgykpd....evefipvsaykgdnvvkksenapwyk............gktllealdkl.eapekpvdkplripiqdvysitgvgtvpvgrvetgvlkkgekvvfepag.....vsgevksiemhheqieqaepgdnigfnvrgvskkdirr.gdvagdadn.ppkvakeftaqivvlqhpgaitvgytpvldahtaqvacrfvellkkldprtgkvkeenpkflktgdaaivklkptkplviekvkeipklgrfairdmgqtvaagvvidvkk 424
                  ek+h+ +++ ghvdsgkst++grll+e g+i+er +eklk ea+  gk+sf fa+ +d+ keerergvti  + k f t+k++ ti+dapghrdfiknmi+ga+qad+a+l+v +d + +            vq+qtr+h+ l   lg+kqli+ +nkmd+     y++ +++e+  e+ ++l kvg+k d    +v+ +p+s++ gdn+ kksen+ w++             +tl + l+++  +p +    p+r+p+  +y+i gvg v  grve g++k+ e+vvf p+        g+v +iemhh + e a+pgdn+g+n++g+ k+++ r gdv   +++     + +f+aqi  l+ pg+i  gy+p+  +   + acr ve+  k+ + tg +k enp+ lk+ + a v ++p +plv++ +k+   l r+a  d + +v  g v  v++
  MMETSP1137-20121227|4410_1   4 TEKDHMSIVICGHVDSGKSTTTGRLLFELGGIPEREMEKLKAEADRLGKSSFAFAFYMDRQKEERERGVTISCTTKEFFTEKWHYTIIDAPGHRDFIKNMISGAAQADVALLMVPADGNFTTaiqkgnhkageVQGQTRQHARLINLLGVKQLIIGVNKMDTDTagpYSKARYDEVGGEMKNMLIKVGWKKDfvekSVPVLPLSGWMGDNLNKKSENMSWWEgvdvlvekttmhINTLYDCLNDMcSPPGRNETSPMRLPVSGIYKIKGVGDVLAGRVEQGLVKPNEEVVFMPTNtpanpCGGKVFTIEMHHTRHEVAKPGDNVGLNIKGLDKQNMPRvGDVMIYKKDkSLDQCGQFSAQIQTLDIPGEIKLGYSPIGFVRCGRSACRAVEFKFKVGKETGGKKMENPHSLKSNEMAEVVFRPQQPLVVDSFKNCEGLSRIAFLDGNTAVMLGKVTTVVS 463
                 58**************************************************************************************************************997765533356677788888****************************854344*********************997522227899**********************999***9999998999999976527889999**************************************9876222224689******************************995559**8766554899***************************************************************************************************999988865 PP

>> TIGR02034  CysN: sulfate adenylyltransferase, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  159.9   0.0     6e-50     2e-47       3     400 ..      11     454 ..       9     459 .. 0.81

  Alignments for each domain:
  == domain 1    score: 159.9 bits;  conditional E-value: 6e-50
   TIGR02034   3 fltcGsvddGkstliGrllhdtkqiledqlaalerdskkkgtegeeidlallvdGlqaereqgitidvayryfstdkrkfivadtPGheqytrnmatgastadlavllvda........rkG......vleqtrrhsiiasllGikhvvlavnkidlvd...ydeevfeeikkdylalaeklg......vsdvtviPlsalkGdnvveksesmpWyeGptllevletveve...........e..saeeeelrlpvqyvnrpnldfrGyaGtiasGsvkvGdevvvlpsgres.....rvarivtfdgelekaeaGeavtlvle..deidisr.Gdl.laaadeapevadqfaaelvwlad.eallpGksyk..lklgtkkvrasvaeikhkvdvnt..lekeaakelelneiglvklsldeeialdayeenrttGafilidrlsnat 400
                 ++ cG vd Gkst  Grll++   i e ++++l+ ++ + g++     +a+ +d  + ere+g+ti  + + f t+k ++ + d+PGh  + +nm+ ga+ ad+a+l+v a        +kG      v+ qtr+h+ +  llG+k++++ vnk+d      y+++ ++e+  + +++  k+g       ++v v+Pls+  Gdn+ +kse+m W+eG+ +l    t++++              + e++++rlpv  + + +     +aG +  G vk+ +evv +p ++ +     +v  i   +   e a+ G+ v l ++  d+ ++ r Gd+ + ++d++++   qf+a++ +l+    ++ G s    ++ g +  ra   e k+kv  +t   + e+ ++l+ ne+++v    ++++++d++++ + +  + ++d  +   
  MMETSP1137-20121227|4410_1  11 IVICGHVDSGKSTTTGRLLFELGGIPEREMEKLKAEADRLGKSS--FAFAFYMDRQKEERERGVTISCTTKEFFTEKWHYTIIDAPGHRDFIKNMISGAAQADVALLMVPAdgnfttaiQKGnhkageVQGQTRQHARLINLLGVKQLIIGVNKMDTDTagpYSKARYDEVGGEMKNMLIKVGwkkdfvEKSVPVLPLSGWMGDNLNKKSENMSWWEGVDVLVEKTTMHINtlydclndmcsPpgRNETSPMRLPVSGIYKIKGVGDVLAGRVEQGLVKPNEEVVFMPTNTPAnpcggKVFTIEMHHTRHEVAKPGDNVGLNIKglDKQNMPRvGDVmIYKKDKSLDQCGQFSAQIQTLDIpGEIKLGYSPIgfVRCGRSACRA--VEFKFKVGKETggKKMENPHSLKSNEMAEVVFRPQQPLVVDSFKNCEGLSRIAFLDGNTAVM 454
                 689***********************************999887..99*************************************************************8744444444344444446788*************************7533449********999998877764111111567999***********************98886655555542221111111112246789***********9999999********************998762223368888888899999*********98755566776669962568999**************99525688887754226666555555..566666665551156778899************************99999999999877665 PP

>> TIGR00485  EF-Tu: translation elongation factor Tu
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  133.1   0.1   6.8e-42   2.3e-39       8     312 ..       4     367 ..       2     372 .. 0.77

  Alignments for each domain:
  == domain 1    score: 133.1 bits;  conditional E-value: 6.8e-42
   TIGR00485   8 rskphvnvgtighvdhgkttltaaittvl.......akegkaaakkyde........idkapeekargitintahveyetekrhyahvdcpghadyvknmitgaaqmdgailvvsa..............adgpmpqtrehillarqvgvpklvvflnkvdlvdde....ellelvelevrellse....ydfpgddvpivrgsal..kale..............gdaeweekilelmeavdeyiptperevdkpfllaiedvfsitgrgtvvtgrvergevkvgeeveivglketkk...ttvtgvemfkklldeakagdnvgvllrgvkkeeier.g..qvlakpgsikphkkfeaevyvl 312
                  +k+h+ +   ghvd gk+t t  +   l        ++ ka+a +  +        +d+  ee++rg+ti++++ e+ tek hy+ +d pgh d++knmi+gaaq d a+l+v a              a  +  qtr+h  l + +gv +l++ +nk+d  +         + v  e++++l +    +df  + vp++  s      l+                ++ + +i  l + ++++   p r+   p+ l++  ++ i+g g v +grve+g vk +eev  +  ++  +     v  +em +   + ak gdnvg+ ++g++k+++ r g  ++  k  s+    +f+a++  l
  MMETSP1137-20121227|4410_1   4 TEKDHMSIVICGHVDSGKSTTTGRLLFELggipereMEKLKAEADRLGKssfafafyMDRQKEERERGVTISCTTKEFFTEKWHYTIIDAPGHRDFIKNMISGAAQADVALLMVPAdgnfttaiqkgnhkAGEVQGQTRQHARLINLLGVKQLIIGVNKMDTDTAGpyskARYDEVGGEMKNMLIKvgwkKDFVEKSVPVLPLSGWmgDNLNkksenmswwegvdvLVEKTTMHINTLYDCLNDMCSPPGRNETSPMRLPVSGIYKIKGVGDVLAGRVEQGLVKPNEEVVFMPTNTPANpcgGKVFTIEMHHTRHEVAKPGDNVGLNIKGLDKQNMPRvGdvMIYKKDKSLDQCGQFSAQIQTL 367
                 689*****************999876655222221123334444332222222222389******************************************************97633322222222111223567************************9876532222567889999999997522226788889***8655441144547778888988766555677778999999**************************************************99998655422257999****************************98865224456889999999999999876 PP

>> TIGR00475  selB: selenocysteine-specific translation elongation factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.5   0.5   2.1e-17   7.3e-15       3     132 ..      11     187 ..       9     199 .. 0.73
   2 !   43.7   0.0   9.8e-15   3.3e-12     172     259 ..     255     349 ..     229     370 .. 0.81

  Alignments for each domain:
  == domain 1    score: 52.5 bits;  conditional E-value: 2.1e-17
   TIGR00475   3 iataGHvDHGKtt....Llkaltgid........................adrlPeEkKRGltiDlGyaylpledkvlgliDvPGHekflknalagvggidaalLvvdad........eG......vkaqtkEHLavlkllgikelivvltKaDr.....vdeeevkevEeelkeil 132
                 i++ GHvD GK t    Ll +l gi                          dr  eE+ RG+ti      +  e+   ++iD+PGH  f+kn+++g + +d alL+v ad         G      v+ qt+ H ++++llg+k+li+ ++K+D        +++ +ev  e+k++l
  MMETSP1137-20121227|4410_1  11 IVICGHVDSGKSTttgrLLFELGGIPeremeklkaeadrlgkssfafafyMDRQKEERERGVTISCTTKEFFTEKWHYTIIDAPGHRDFIKNMISGAAQADVALLMVPADgnfttaiqKGnhkageVQGQTRQHARLINLLGVKQLIIGVNKMDTdtagpYSKARYDEVGGEMKNML 187
                 6666677776643334456666666556666666666666666666666678999****************************************************9873333333322333334678************************962211123455666666666655 PP

  == domain 2    score: 43.7 bits;  conditional E-value: 9.8e-15
   TIGR00475 172 dkqkplrlaiDraFkvKGaGtvvtGtafsGevkvgDelvlepinkkv.....rvkalqaqnqsvekavAGqRialnladvdkeklkRG..llilk 259
                 +  +p+rl++  ++k+KG+G v+ G + +G vk ++e+v  p+n +      +v +++ +++  e a  G+ ++ln++++dk+++ R   ++i k
  MMETSP1137-20121227|4410_1 255 NETSPMRLPVSGIYKIKGVGDVLAGRVEQGLVKPNEEVVFMPTNTPAnpcggKVFTIEMHHTRHEVAKPGDNVGLNIKGLDKQNMPRVgdVMIYK 349
                 6789****************************************986555559********************************9954743332 PP

>> TIGR03680  eif2g_arch: translation initiation factor 2, gamma subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.8   0.0   1.1e-17   3.9e-15       4     151 ..       7     169 ..       4     217 .. 0.69
   2 ?    3.1   0.0     0.027       9.4     227     292 ..     272     330 ..     231     338 .. 0.78
   3 ?   -3.4   0.0       2.7   9.1e+02      43      57 ..     373     387 ..     370     395 .. 0.82

  Alignments for each domain:
  == domain 1    score: 53.8 bits;  conditional E-value: 1.1e-17
   TIGR03680   4 pevniglvGhvDhGkttlvkalt...GvwtdthseelkrgisiklGyadaei..kkceeceepeaytteekceecgsetellrkvsfvDaPGhetLmatmlsGaalmdgalLviaaneevP.............qpqtkehlvaleiigiknivivqnkidlvske 151
                  +++i + GhvD Gk+t++  l    G   ++  e l ++ + +lG   + +  + ++++ee e+ +t  +c++ +    ++ + +++DaPGh  ++  m+sGaa  d alL++ a+ ++              q qt++h   ++++g+k+++i  nk+d  +  
  MMETSP1137-20121227|4410_1   7 DHMSIVICGHVDSGKSTTTGRLLfelGGIPEREMEKL-KAEADRLGKSSFAFafYMDRQKEERERGVT-ISCTTKE-FFTEKWHYTIIDAPGHRDFIKNMISGAAQADVALLMVPADGNFTtaiqkgnhkagevQGQTRQHARLINLLGVKQLIIGVNKMDTDTAG 169
                 5789*************99887522244455555555.56788***9987761145555555544444.3466533.3345567899***************************9976543222222222233378*************************86654 PP

  == domain 2    score: 3.1 bits;  conditional E-value: 0.027
   TIGR03680 227 lkGGviGGslvqGklkvgdeieirPGikvekegkteyepiltevtsleagkkkveeakPgGlvavg 292
                  +G v+ G + qG +k ++e+   P            +p   +v  +e+ +++ e akPg  v++ 
  MMETSP1137-20121227|4410_1 272 GVGDVLAGRVEQGLVKPNEEVVFMPTNTPA-------NPCGGKVFTIEMHHTRHEVAKPGDNVGLN 330
                 3578*****************999975554.......48999999999999999999999998876 PP

  == domain 3    score: -3.4 bits;  conditional E-value: 2.7
   TIGR03680  43 iklGyadaeikkcee 57 
                 iklGy  + +++c +
  MMETSP1137-20121227|4410_1 373 IKLGYSPIGFVRCGR 387
                 9***********954 PP

>> TIGR01394  TypA_BipA: GTP-binding protein TypA/BipA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.3   0.0   1.8e-17   6.1e-15       4     270 ..      11     327 ..       9     355 .. 0.73

  Alignments for each domain:
  == domain 1    score: 52.3 bits;  conditional E-value: 1.8e-17
   TIGR01394   4 iaiiahvDhGkttlvDklLkqsg.....vlrekeeveerv..........mDsndlererGitilakntavkykdtkinivDtPGhaDfGGevervlsmvdgvlllvDa........seG......plpqtrfvlkkalelgl.kpivvinkiDrp......darpeevvdevfdLfvelgaddeqld..fpvvyasakeGvasle..............eedesedleplfdailehvpaPkadkdeplqllvttldydeylGriaigrverGkvkkgqqvallkkdgkiekariskllafeglerveideaeaGdiv 270
                 i i  hvD Gk t   +lL + g      +++ ++ ++r+          mD +  ererG+ti + +     ++ +  i+D+PGh Df  ++       d +ll+v a        ++G      +  qtr   +    lg  + i+ +nk+D +      +ar +ev  e+ ++++++g +++ ++  +pv+  s+  G    +               e+++ +++ l+d + ++  +P  ++ +p++l v+ + + + +G ++ grve+G vk +++v ++ ++   +     k++++  +++++ + a+ Gd v
  MMETSP1137-20121227|4410_1  11 IVICGHVDSGKSTTTGRLLFELGgiperEMEKLKAEADRLgkssfafafyMDRQKEERERGVTISCTTKEFFTEKWHYTIIDAPGHRDFIKNMISGAAQADVALLMVPAdgnfttaiQKGnhkageVQGQTRQHARLINLLGVkQLIIGVNKMDTDtagpysKARYDEVGGEMKNMLIKVGWKKDFVEksVPVLPLSGWMGDNLNKksenmswwegvdvlVEKTTMHINTLYDCLNDMCSPPGRNETSPMRLPVSGIYKIKGVGDVLAGRVEQGLVKPNEEVVFMPTNTPANP-CGGKVFTI-EMHHTRHEVAKPGDNV 327
                 78999******999999997766222222233333344423333334444******************************************999999********9873232222212211111233588876665444454156778*****8622223257999****************998873367777787777654446789999*99999878888999******************************************************99987743332.22333332.3344445556666655 PP

>> TIGR01393  lepA: GTP-binding protein LepA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.6   0.0   7.1e-11   2.4e-08       6     103 ..      11     119 ..       6     128 .. 0.78
   2 !   12.3   0.0   2.4e-05    0.0083     162     285 ..     232     358 ..     222     367 .. 0.79

  Alignments for each domain:
  == domain 1    score: 30.6 bits;  conditional E-value: 7.1e-11
   TIGR01393   6 fsiiahidhGkstladrllektkavserelke.....q...........lldsldlererGitikaqavrlkykakdgeeyvlnlidtPGhvdfsyevsrslaaceGalllvda 103
                 + i  h+d Gkst + rll + + + ere+++                 ++d+   ererG+ti  ++ ++ +     e+++  +id+PGh df  ++    a ++ all+v a
  MMETSP1137-20121227|4410_1  11 IVICGHVDSGKSTTTGRLLFELGGIPEREMEKlkaeaDrlgkssfafafYMDRQKEERERGVTISCTTKEF-F----TEKWHYTIIDAPGHRDFIKNMISGAAQADVALLMVPA 119
                 67889***********************9975222221222222333336888889********8876543.3....4679999************999999999******987 PP

  == domain 2    score: 12.3 bits;  conditional E-value: 2.4e-05
   TIGR01393 162 aktGigieelleaivkkvpaPkgdkeaplkalifdsvydayrGvvvyvrvveGkikkgdkikllstgkeyeveevgvltpkl..vkeeelkaGe.vGyliagikdvkdvkvGdtitsvkkpakealp 285
                  kt + i+ l + + +  ++P  ++++p++  +   +  +  G v+  rv +G +k+++++ ++ t++  +     v+t+++  +++e  k G+ vG  i g+ + +  +vGd +   k+++ ++  
  MMETSP1137-20121227|4410_1 232 EKTTMHINTLYDCLNDMCSPPGRNETSPMRLPVSGIYKIKGVGDVLAGRVEQGLVKPNEEVVFMPTNTPANPCGGKVFTIEMhhTRHEVAKPGDnVGLNIKGLDKQNMPRVGDVMIYKKDKSLDQCG 358
                 588889999999888888888888888888666555545567779999******************99888776666666663266666677744******************99988887766655 PP

>> TIGR00484  EF-G: translation elongation factor G
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.2   0.1   3.8e-14   1.3e-11      12     146 ..      10     172 ..       4     198 .. 0.66

  Alignments for each domain:
  == domain 1    score: 41.2 bits;  conditional E-value: 3.8e-14
   TIGR00484  12 niGisahidaGktttterilfytgki..hkigevh.....dGaat......mdwmeqekerGititsaattvewkdfrinlidtPGhvdftvevers.........lrvldGavavl....davaG.vepqsetvwrqakkyevPrivf.vnkmdkiGanflk 146
                  i i  h+d+Gk+ttt r+lf  g i   ++++ +      G++       md  + e+erG+ti+ ++ + + ++++  +id+PGh df  ++            +   dG  +      + +aG v+ q+    r ++  +v +++  vnkmd   a ++ 
  MMETSP1137-20121227|4410_1  10 SIVICGHVDSGKSTTTGRLLFELGGIpeREMEKLKaeadrLGKSSfafafyMDRQKEERERGVTISCTTKEFFTEKWHYTIIDAPGHRDFIKNMISGaaqadvallMVPADGNFTTAiqkgNHKAGeVQGQTRQHARLINLLGVKQLIIgVNKMDTDTAGPYS 172
                 68899****************99866222222222222233443222333499999*********99999999999**************8654433000111110333466433221111233334999999999999999999865449999998887765 PP

>> TIGR00231  small_GTP: small GTP-binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.9   0.1   4.5e-09   1.5e-06       3      97 ..       8     131 ..       6     186 .. 0.73
   2 ?   -1.8   0.0       1.4   4.9e+02      53      66 ..     362     375 ..     349     389 .. 0.81

  Alignments for each domain:
  == domain 1    score: 25.9 bits;  conditional E-value: 4.5e-09
   TIGR00231   3 eikivivGhvdvGKstLlnsllknkisiteskp................gvtrdyvteqieedGkt............ykvnllDTaGqedfdairrlyvreverslevv..divilvldveegl 97 
                  + ivi Ghvd+GKst++ +ll++ + i e++                 +++ +++++ ++e+G+t               +++D +G+ df +      +++++ l +v  d+++   ++++g+
  MMETSP1137-20121227|4410_1   8 HMSIVICGHVDSGKSTTTGRLLFELGGIPEREMeklkaeadrlgkssfaFAFYMDRQKEERERGVTiscttkefftekWHYTIIDAPGHRDFIKNMISGAAQADVALLMVpaDGNFT-TAIQKGN 131
                 578*********************9988888667899999*******99999**************************99***********93322222444444444332266666.6666654 PP

  == domain 2    score: -1.8 bits;  conditional E-value: 1.4
   TIGR00231  53 ykvnllDTaGqedf 66 
                 ++++ lD++G+++ 
  MMETSP1137-20121227|4410_1 362 AQIQTLDIPGEIKL 375
                 68999*****8765 PP

>> TIGR00503  prfC: peptide chain release factor 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.8   0.0   4.1e-09   1.4e-06      14     114 ..      11     120 ..       4     194 .. 0.70

  Alignments for each domain:
  == domain 1    score: 24.8 bits;  conditional E-value: 4.1e-09
   TIGR00503  14 faiishpdaGkttltekvllyGnaiqeaG..avkargsqrsaks.....dwm...emekqrGisittsvlqfdyrdklvnlldtpGhedfsedtyrtltavdsalmvidaa 114
                 + i  h d+Gk+t t ++l+  + i e     +ka   +r  ks      +m   + e++rG++i+++  +f  +     ++d+pGh+df ++     + +d al+++ a 
  MMETSP1137-20121227|4410_1  11 IVICGHVDSGKSTTTGRLLFELGGIPEREmeKLKAEA-DRLGKSsfafaFYMdrqKEERERGVTISCTTKEFFTEKWHYTIIDAPGHRDFIKNMISGAAQADVALLMVPAD 120
                 56889*************9877777655500455432.2223331111134411146788************99999***************************9998664 PP

>> TIGR00490  aEF-2: translation elongation factor aEF-2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   3.3e-06    0.0011      21     117 ..      10     117 ..       4     125 .. 0.70
   2 ?   -3.6   0.0       1.4   4.6e+02     294     325 ..     264     295 ..     257     302 .. 0.75

  Alignments for each domain:
  == domain 1    score: 14.9 bits;  conditional E-value: 3.3e-06
   TIGR00490  21 nigivahidhgkttlsdnllagagmise.e...la......geq.....lfldfdeqeqergitidaanvsmvheyegneylinlidtpghvdfggdvtramravdgaivvv 117
                  i i+ h+d gk+t +  ll   g i e e   l       g+       ++d +++e+erg+ti+ +     +e+  +++   +id+pgh df  ++       d a+++v
  MMETSP1137-20121227|4410_1  10 SIVICGHVDSGKSTTTGRLLFELGGIPErEmekLKaeadrlGKSsfafaFYMDRQKEERERGVTISCTT----KEFFTEKWHYTIIDAPGHRDFIKNMISGAAQADVALLMV 117
                 58899********99999999888775422112321111112222222247888999********9865....677778888899*********988877666667776666 PP

  == domain 2    score: -3.6 bits;  conditional E-value: 1.4
   TIGR00490 294 itkivvdkhagevavgrlysgaikkgsevylv 325
                 ++ i   k  g+v  gr+  g +k+ +ev ++
  MMETSP1137-20121227|4410_1 264 VSGIYKIKGVGDVLAGRVEQGLVKPNEEVVFM 295
                 555666678899999********999998654 PP

>> TIGR00487  IF-2: translation initiation factor IF-2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.1      0.29        99      90     102 ..      11      23 ..       3      28 .. 0.82
   2 !   12.7   0.0   2.5e-05    0.0085     136     204 ..      87     170 ..      65     201 .. 0.71
   3 ?    0.1   0.0      0.16        55     497     574 ..     264     346 ..     214     360 .. 0.56

  Alignments for each domain:
  == domain 1    score: -0.8 bits;  conditional E-value: 0.29
   TIGR00487  90 vtimGhvDhGkts 102
                 + i GhvD Gk +
  MMETSP1137-20121227|4410_1  11 IVICGHVDSGKST 23 
                 6799*******76 PP

  == domain 2    score: 12.7 bits;  conditional E-value: 2.5e-05
   TIGR00487 136 kitflDtPGheaftsmrarGakvtDivvlvvaadDG....vkpqtiea.......iehakaanv....PiivainkiDkpeanp 204
                 + t +D+PGh  f +    Ga  +D+++l+v ad      +++    a        +ha+  n      +i+ +nk+D ++a p
  MMETSP1137-20121227|4410_1  87 HYTIIDAPGHRDFIKNMISGAAQADVALLMVPADGNfttaIQKGNHKAgevqgqtRQHARLINLlgvkQLIIGVNKMDTDTAGP 170
                 5699**********99999*************9864111134333333221111146777666422235788888888877766 PP

  == domain 3    score: 0.1 bits;  conditional E-value: 0.16
   TIGR00487 497 vrevfkvpkiGaiaGcvvkeGvikrdnklrvlrdgvvi..feGeidsLkrfkddvkeveegyeCGivik...nyndikvGDii 574
                 v  ++k+  +G +  + v++G++k ++++  +  ++      G++ ++    +  +  + g + G+ ik   + n  +vGD++
  MMETSP1137-20121227|4410_1 264 VSGIYKIKGVGDVLAGRVEQGLVKPNEEVVFMPTNTPAnpCGGKVFTIEMHHTRHEVAKPGDNVGLNIKgldKQNMPRVGDVM 346
                 55566666666666666666666666665555544433113455555544444444444455555544311133334455544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (465 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       120  (0.029254); expected 82.0 (0.02)
Passed bias filter:                      107  (0.0260848); expected 82.0 (0.02)
Passed Vit filter:                        19  (0.00463189); expected 4.1 (0.001)
Passed Fwd filter:                        12  (0.0029254); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.62u 0.16s 00:00:00.78 Elapsed: 00:00:00.77
# Mc/sec: 797.08
//
Query:       MMETSP1137-20121227|4411_1  [L=68]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (68 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        19  (0.00463189); expected 82.0 (0.02)
Passed bias filter:                       15  (0.00365675); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.28
# Mc/sec: 320.54
//
Query:       MMETSP1137-20121227|4412_1  [L=501]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.9e-13   48.0  13.0    2.9e-13   48.0   9.0    3.0  3  TIGR00880 2_A_01_02: multidrug resistance protein


Domain annotation for each model (and alignments):
>> TIGR00880  2_A_01_02: multidrug resistance protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.0   9.0   7.1e-17   2.9e-13       2     133 ..     148     281 ..     147     287 .. 0.89
   2 ?   -2.6   0.0      0.28   1.1e+03      15      41 ..     302     328 ..     301     342 .. 0.64
   3 ?   -3.1   7.1      0.42   1.7e+03       3     139 ..     354     493 ..     352     494 .. 0.81

  Alignments for each domain:
  == domain 1    score: 48.0 bits;  conditional E-value: 7.1e-17
   TIGR00880   2 lllagyAlgqlvvsplsglltdrvGrkpvllvglfifvlsqllfalssnitvliiarilqGfgaaaalvagaaliadiikee..ersvalgllsagialgpilGpllGavlaqalgwralflilallallafil 133
                 +l +++A++ +++sp++g+ltd vGrkpvll +l++ +++++ +a+  +++++  ++++++++ ++++ ++++++ad + ++  ++++a gll a+++ g+ lG +l  +l + +  r++  +++ll  + +++
  MMETSP1137-20121227|4412_1 148 ILSTSSAAAEILLSPVAGTLTDSVGRKPVLLASLLTAFAATAGAAAMPTVAMISASKFVSSLSLGMFFLSAGTMLADNYRMTptKLAAASGLLFAIVNGGFGLGVALSXLLPPSVRQRYIAGAVVLLTSVGLAA 281
                 667899***********************************************************************99877669***************************9988887766555555554444 PP

  == domain 2    score: -2.6 bits;  conditional E-value: 0.28
   TIGR00880  15 splsglltdrvGrkpvllvglfifvls 41 
                 +p+sg+   ++ r+  llv l+  +l+
  MMETSP1137-20121227|4412_1 302 NPFSGARLLQYDRRMQLLVXLASLLLA 328
                 677776666777777666666655554 PP

  == domain 3    score: -3.1 bits;  conditional E-value: 0.42
   TIGR00880   3 llagyAlgqlvvsplsglltdrvGrkpvllvglfifvlsqllfalssnitvliiarilqGfgaaaalvagaaliadiikee.ersvalgllsagialgpilGpllGavla....qalgwralflilallallafilllfllp 139
                 l++++A++ +v++  sg l+  +G ++  l+ ++  +l+   f  s  +   +++ +++ +g+a  l a++ + a + k +   +++ g  s  ia   +lGp++ + l+    +a   + +f++ ++l+l+a+ l+ f lp
  MMETSP1137-20121227|4412_1 354 LFTAMAISGVVANSASGXLIKTMGLRNFSLLATASSLLGWSGFLSSARV--ALVCTAVGLLGTARTLGAVTMMTAHAGKLGiPQGQVAGDRSNLIAWLKVLGPIIYGQLYvqgfKAGAPQLPFVLNVILMLVALCLTPFALP 493
                 7889999999999999999999999999999999999998877765554..55666677777778888888889998888888888888888888888999998877777676667777899*********99999988877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (501 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       196  (0.0477816); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.18s 00:00:00.55 Elapsed: 00:00:00.41
# Mc/sec: 1612.84
//
Query:       MMETSP1137-20121227|4414_1  [L=392]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.4e-42  142.4   0.5    4.2e-42  142.1   0.3    1.1  1  TIGR02475 CobW: cobalamin biosynthesis protein CobW
    9.7e-10   36.1   0.5      1e-05   22.9   0.1    2.2  2  TIGR00073 hypB: hydrogenase accessory protein HypB
    2.2e-07   28.7   0.3    8.4e-07   26.8   0.0    1.9  2  TIGR00101 ureG: urease accessory protein UreG
    0.00046   17.2   0.1      0.023   11.6   0.0    2.2  2  TIGR00750 lao: LAO/AO transport system ATPase
    0.00055   17.0   0.1     0.0011   16.1   0.1    1.4  1  TIGR03819 heli_sec_ATPase: helicase/secretion neighborhood ATPase
    0.00081   17.1   0.0     0.0018   16.0   0.0    1.5  1  TIGR00150 HI0065_YjeE: ATPase, YjeE family
     0.0016   15.8   0.6     0.0055   14.0   0.1    2.0  3  TIGR03015 pepcterm_ATPase: putative secretion ATPase, PEP-CTERM locus subfamily
     0.0018   15.9   0.1      0.076   10.6   0.0    2.3  2  TIGR00231 small_GTP: small GTP-binding protein domain
  ------ inclusion threshold ------
       0.01   12.6   0.9       0.34    7.6   0.0    2.2  2  TIGR03156 GTP_HflX: GTP-binding protein HflX


Domain annotation for each model (and alignments):
>> TIGR02475  CobW: cobalamin biosynthesis protein CobW
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  142.1   0.3   9.2e-45   4.2e-42       3     251 ..     119     361 ..     117     391 .. 0.83

  Alignments for each domain:
  == domain 1    score: 142.1 bits;  conditional E-value: 9.2e-45
   TIGR02475   3 kipvtvvtGflGaGkttlirhllenaeGkriavivnefGdlGidGeilkacgieacseeeivelanGcicctvaddflptlekllareeeldhilietsGlalpkplvqafqwpeirsr......vtvdgvvavvdsaavaaGrfaedldaleaqraadenldhespleelfedqlacadlvilnkadlldaaglekvraeiaeelpravkiveaeeGevdaevllGlgaaaeedlearkshhdleeeeeehdhd 251
                 ++pvtv++GflGaGkttl++hllen +G+riav+vn++ ++ +d +++++  +   +ee+ivel+nGcicct+ +d+l tl +l a +       +e+sG++ p  + ++f + + +s       v++ ++v+vvd+aa+ +   + d+   ++ +a+d     +  +++l+ +ql  ad+++lnk dl++ a++++v+a + + ++ a +iv++ + ++d++ ll    a + ++ + + h ++ +e+ eh+h 
  MMETSP1137-20121227|4414_1 119 QLPVTVLSGFLGAGKTTLLKHLLENRSGHRIAVVVNDMASINVDAQLVRQAKVL-QTEEKIVELSNGCICCTLREDLLNTLANLAAER-----RFMESSGISEPLHVAETFTFRDEKSGlslsdvVSLHALVTVVDAAALFEHLTSIDTLVDRNWQASD---GDQRTVSQLLCEQLEFADVLVLNKLDLVSDAQVHAVHALLLK-VNPAADIVHTLHSRLDPAWLLS--SAPKFKMVKAEMHPQWLKEAREHEHT 361
                 79************************************************9776.6789***********************998755.....4789****************9988751111115566778888888888776665543333333333...345789****************************99987765.566789*************986..56677888899999999999999993 PP

>> TIGR00073  hypB: hydrogenase accessory protein HypB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.9   0.1   2.3e-08     1e-05      29      92 ..     118     187 ..     101     208 .. 0.69
   2 !   11.4   0.0   7.9e-05     0.036     155     195 ..     285     323 ..     270     329 .. 0.89

  Alignments for each domain:
  == domain 1    score: 22.9 bits;  conditional E-value: 2.3e-08
   TIGR00073  29 gllvlnlls.siGsGktlllekliealkkevkiavieGDlit.kaDaeRlrkagv.....kaiqintGkeC 92 
                  +l + +ls   G+Gkt+ll++l+e++   ++iav++ D+++ + Da+ +r+a v     k+++++ G  C
  MMETSP1137-20121227|4414_1 118 VQLPVTVLSgFLGAGKTTLLKHLLENRSG-HRIAVVVNDMASiNVDAQLVRQAKVlqteeKIVELSNGCIC 187
                 344444454158**************988.9*********98578**999986542212155666666554 PP

  == domain 2    score: 11.4 bits;  conditional E-value: 7.9e-05
   TIGR00073 155 fkeadlilinkvdlveavdadvekvkadvkkinPeveiilv 195
                 ++ ad++++nk dlv   da+v+ v+a + k+nP ++i+++
  MMETSP1137-20121227|4414_1 285 LEFADVLVLNKLDLVS--DAQVHAVHALLLKVNPAADIVHT 323
                 678***********97..89999***************975 PP

>> TIGR00101  ureG: urease accessory protein UreG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.8   0.0   1.8e-09   8.4e-07       6      90 ..     125     208 ..     120     214 .. 0.80
   2 ?   -1.2   0.0      0.72   3.3e+02     139     150 ..     288     299 ..     284     307 .. 0.85

  Alignments for each domain:
  == domain 1    score: 26.8 bits;  conditional E-value: 1.8e-09
   TIGR00101   6 vagpvgsgktaliealtrelakkydlavitndiyt.kedaeflvknsvlpperilgvetggcphtairedaslnleaveelearfp 90 
                 ++g +g+gkt+l++ l  + ++ + +av+ nd+ + + da+++ +++vl  e  +   + gc   ++red    l+ ++  e rf+
  MMETSP1137-20121227|4414_1 125 LSGFLGAGKTTLLKHLLEN-RSGHRIAVVVNDMASiNVDAQLVRQAKVLQTEEKIVELSNGCICCTLREDLLNTLANLA-AERRFM 208
                 57999**********9876.78899*******976277**********987766656678999*******855555443.456776 PP

  == domain 2    score: -1.2 bits;  conditional E-value: 0.72
   TIGR00101 139 sdllvinkidla 150
                 +d+lv+nk+dl 
  MMETSP1137-20121227|4414_1 288 ADVLVLNKLDLV 299
                 69********96 PP

>> TIGR00750  lao: LAO/AO transport system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.6   0.0   5.2e-05     0.023      38      74 ..     124     158 ..     106     177 .. 0.83
   2 ?    3.5   0.0     0.015       6.7     170     193 ..     284     307 ..     257     356 .. 0.75

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 5.2e-05
   TIGR00750  38 GltGvPGaGkstlveklieelrrrGlkvaviavDPss 74 
                  l G+ GaGk tl+++l e+  r G+++av+  D +s
  MMETSP1137-20121227|4414_1 124 VLSGFLGAGKTTLLKHLLEN--RSGHRIAVVVNDMAS 158
                 4679*************985..99*******999877 PP

  == domain 2    score: 3.5 bits;  conditional E-value: 0.015
   TIGR00750 170 vleiaDivvvnkaDkeeaekerla 193
                  le aD++v+nk D     ++ ++
  MMETSP1137-20121227|4414_1 284 QLEFADVLVLNKLDLVSDAQVHAV 307
                 58***********98766643332 PP

>> TIGR03819  heli_sec_ATPase: helicase/secretion neighborhood ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.1   2.3e-06    0.0011     182     221 ..     124     163 ..     106     176 .. 0.88

  Alignments for each domain:
  == domain 1    score: 16.1 bits;  conditional E-value: 2.3e-06
   TIGR03819 182 lvsGgtGsGkttLLsalLalvaedeRivlvedaaelrpdh 221
                 ++sG  G+GkttLL  lL + + +   v+v+d a +++d 
  MMETSP1137-20121227|4414_1 124 VLSGFLGAGKTTLLKHLLENRSGHRIAVVVNDMASINVDA 163
                 67999***************9999999*******999875 PP

>> TIGR00150  HI0065_YjeE: ATPase, YjeE family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0     4e-06    0.0018      23      45 ..     121     143 ..     105     156 .. 0.78

  Alignments for each domain:
  == domain 1    score: 16.0 bits;  conditional E-value: 4e-06
   TIGR00150  23 tvvlLkGdlGaGKttlvkgllkg 45 
                  v +L+G lGaGKttl+k ll++
  MMETSP1137-20121227|4414_1 121 PVTVLSGFLGAGKTTLLKHLLEN 143
                 4889**************99986 PP

>> TIGR03015  pepcterm_ATPase: putative secretion ATPase, PEP-CTERM locus subfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   0.0       3.2   1.4e+03     208     243 ..      53      88 ..      33      88 .. 0.70
   2 !   14.0   0.1   1.2e-05    0.0055      47      85 ..     124     164 ..     113     178 .. 0.81
   3 ?   -1.7   0.0      0.75   3.4e+02      62      93 ..     265     296 ..     242     322 .. 0.60

  Alignments for each domain:
  == domain 1    score: -3.8 bits;  conditional E-value: 3.2
   TIGR03015 208 aGnrdavefeedaldaiykfsrGiPrrinilcdrll 243
                  G +   ++e+++    +  s+ +P+ + ++ +r+l
  MMETSP1137-20121227|4414_1  53 LGVDVWQQWEDKVSPSAFLPSAAMPKAVSSVIQRVL 88 
                 566666778888888888888888888888877775 PP

  == domain 2    score: 14.0 bits;  conditional E-value: 1.2e-05
   TIGR03015  47 litGevGaGkttlvrnllkkleaek..vvlaklvntkvdae 85 
                 ++ G +GaGkttl+++ll++ + ++  vv+  + + +vda+
  MMETSP1137-20121227|4414_1 124 VLSGFLGAGKTTLLKHLLENRSGHRiaVVVNDMASINVDAQ 164
                 88999**************9998772256777888888764 PP

  == domain 3    score: -1.7 bits;  conditional E-value: 0.75
   TIGR03015  62 nllkkleaekvvlaklvntkvdaedllrmvaa 93 
                    + ++ ++ ++++l+  +++  d+l +   
  MMETSP1137-20121227|4414_1 265 RNWQASDGDQRTVSQLLCEQLEFADVLVLNKL 296
                 44444444555555555555555555544333 PP

>> TIGR00231  small_GTP: small GTP-binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.6   0.0   0.00017     0.076       7      33 ..     124     149 ..     119     169 .. 0.80
   2 ?    3.1   0.0     0.035        16     108     132 ..     282     306 ..     245     323 .. 0.72

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 0.00017
   TIGR00231   7 vivGhvdvGKstLlnsllknkisites 33 
                 v+ G+ ++GK+tLl+ ll+n  s + +
  MMETSP1137-20121227|4414_1 124 VLSGFLGAGKTTLLKHLLENR-SGHRI 149
                 5669999************98.66655 PP

  == domain 2    score: 3.1 bits;  conditional E-value: 0.035
   TIGR00231 108 akkkgvpiilvvnKiDlkddlktkv 132
                 +++ ++  +lv+nK Dl++d + + 
  MMETSP1137-20121227|4414_1 282 CEQLEFADVLVLNKLDLVSDAQVHA 306
                 555567779*********9444433 PP

>> TIGR03156  GTP_HflX: GTP-binding protein HflX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   0.0   0.00074      0.34     175     232 ..     106     170 ..     101     190 .. 0.72
   2 ?    3.5   0.1     0.013         6     275     323 ..     262     308 ..     236     322 .. 0.77

  Alignments for each domain:
  == domain 1    score: 7.6 bits;  conditional E-value: 0.00074
   TIGR03156 175 kqreeqrkkrkksevptvalvGYTNaGKstllnaltka......evlaedklFATLdpt.trrlk 232
                 ++r+   k  ++ ++p+  l G+  aGK+tll++l ++       v+++d+     d++ +r+ k
  MMETSP1137-20121227|4414_1 106 RSRRLASKGAHTVQLPVTVLSGFLGAGKTTLLKHLLENrsghriAVVVNDMASINVDAQlVRQAK 170
                 4455555566677899999****************997666666777777776666664145555 PP

  == domain 2    score: 3.5 bits;  conditional E-value: 0.013
   TIGR03156 275 vvDasdeeaeeqieaveevL.eelgaeeipvllvlNkidkleeeeleele 323
                 +vD   ++ +   ++v+++L e+l+      +lvlNk+d+++++++++++
  MMETSP1137-20121227|4414_1 262 LVDRNWQASDGDQRTVSQLLcEQLEF---ADVLVLNKLDLVSDAQVHAVH 308
                 46777777777788888887234555...4589*********99988765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (392 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       213  (0.0519259); expected 82.0 (0.02)
Passed bias filter:                      178  (0.0433935); expected 82.0 (0.02)
Passed Vit filter:                        43  (0.0104827); expected 4.1 (0.001)
Passed Fwd filter:                         9  (0.00219405); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.40u 0.17s 00:00:00.57 Elapsed: 00:00:00.39
# Mc/sec: 1326.66
//
Query:       MMETSP1137-20121227|4415_1  [L=339]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.8e-10   38.3  10.5    7.2e-09   33.0   7.3    2.4  1  TIGR03921 T7SS_mycosin: type VII secretion-associated serine protease mycosin


Domain annotation for each model (and alignments):
>> TIGR03921  T7SS_mycosin: type VII secretion-associated serine protease mycosin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.0   7.3   1.7e-12   7.2e-09       1     145 [.     155     317 ..     155     338 .. 0.73

  Alignments for each domain:
  == domain 1    score: 33.0 bits;  conditional E-value: 1.7e-12
   TIGR03921   1 leleeawklstGa.gvtVAViDtGvd.rhPrLpgev..aGgDlve.....sgdged.dcd................ghGTlvAglIAarpaegsGfvGvAPdakilpirqtskafe.dkeeksavgdletlAkairrAadsgAkVINiSevaclsaksaadeselgaAvkya 145
                 le+e+aw ++ Ga  v+VA+iDtGvd +hP+L++++  + g++ +     + +g   dc                  hG   Ag+++a  ++g G++G A ++k       s+ ++  + +  +++ +  +Aka ++Aad+gA V   S      ++ +++++++ +A++y 
  MMETSP1137-20121227|4415_1 155 LEMESAWAITGGAaNVVVAIIDTGVDmNHPDLRRNQwiNAGEVCGngiddDNNGYVdDCRgynfadgtgtslegdgNHGSHCAGIVGADTGNGXGVAGTAGGSKS------SAGVSlMHLTVFGNTGTGGFAKALVYAADMGAAVASNSWG---YTSPGVSDPSVLDAIDYF 317
                 5789******99636899**************9998886666665555553344333554333333222223333449999********************9984......2222222333457788899***************877665...567788888888888884 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (339 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       142  (0.0346173); expected 82.0 (0.02)
Passed bias filter:                      113  (0.0275475); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.28u 0.14s 00:00:00.42 Elapsed: 00:00:00.42
# Mc/sec: 1065.34
//
Query:       MMETSP1137-20121227|4416_1  [L=248]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00043   17.5   0.0    0.00062   17.0   0.0    1.2  1  TIGR00310 ZPR1_znf: ZPR1 zinc finger domain
     0.0027   15.0   0.0     0.0043   14.4   0.0    1.3  1  TIGR00340 zpr1_rel: zinc finger protein ZPR1 homolog


Domain annotation for each model (and alignments):
>> TIGR00310  ZPR1_znf: ZPR1 zinc finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.0     3e-07   0.00062      52     164 ..     113     224 ..      92     240 .. 0.85

  Alignments for each domain:
  == domain 1    score: 17.0 bits;  conditional E-value: 3e-07
   TIGR00310  52 kryilkidaeadLnkrvvksesatiriPelgleiepGpasegfitnleGvlerveevlktalrlqse.deekkkkaeellerlkevieGkekltvileDPlgqslivseealke 164
                   ++l++++ adL +   k+  a++riP l+ ei  G + + +i ++   +      l + +r +++ d + ++ ++e +++l+ + + +  + v++ DP g s+ + +e  ++
  MMETSP1137-20121227|4416_1 113 CTLTLHVKTRADLWRVFFKAPDASVRIPHLEFEI--GCTHKRHIDTVYNHITNAVWNLSSHIRGRTDlDSAYVEGVTETIDQLNALLDIETPFDVVVDDPTGFSIFKPDEDVEK 224
                 46899999********************877766..88899999999988888888999***998542778899999**************************99887665544 PP

>> TIGR00340  zpr1_rel: zinc finger protein ZPR1 homolog
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.0   2.1e-06    0.0043      49     159 ..     112     222 ..     101     226 .. 0.78

  Alignments for each domain:
  == domain 1    score: 14.4 bits;  conditional E-value: 2.1e-06
   TIGR00340  49 PkryeikieneedLktrvvrsksatiripelgikiepgpasegfisnieGvlerveeklktaldleeed..ekvkkveeilkkieevieGkkkltliieDefGksliesekal 159
                 P  +++++++  dL    +++  a +rip l+ +i  +   + +i ++   +  +  +l+  ++ +++     v+ v e +++++   + ++++ +++ D+ G s+ + ++ +
  MMETSP1137-20121227|4416_1 112 PCTLTLHVKTRADLWRVFFKAPDASVRIPHLEFEIGCTH--KRHIDTVYNHITNAVWNLSSHIRGRTDLdsAYVEGVTETIDQLNALLDIETPFDVVVDDPTGFSIFKPDEDV 222
                 778899999999********************9997765..4566666555555555554444433332226689999999999999******************99987755 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (248 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        90  (0.0219405); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.22u 0.15s 00:00:00.37 Elapsed: 00:00:00.36
# Mc/sec: 909.26
//
Query:       MMETSP1137-20121227|4417_1  [L=355]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (355 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        50  (0.0121892); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.14s 00:00:00.38 Elapsed: 00:00:00.34
# Mc/sec: 1378.12
//
Query:       MMETSP1137-20121227|4418_1  [L=147]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0086   12.7   0.0     0.0087   12.7   0.0    1.0  1  TIGR03240 arg_catab_astD: succinylglutamic semialdehyde dehydrogenase


Domain annotation for each model (and alignments):
>> TIGR03240  arg_catab_astD: succinylglutamic semialdehyde dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.7   0.0   2.1e-06    0.0087     290     383 ..      25     121 ..       2     138 .. 0.81

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 2.1e-06
   TIGR03240 290 dallerlvevaerltvgkydaepqpflGavisekaakellaaqekllalggksllelkqleeeaa..lltpgiidvte.vaevpdeeyfgpllkvlr 383
                 d++l++  +  ++   +++d +p      +   +a+++  +a + + + ggk ll+l   + ++a  l+t +++   +  a+v d e f+pl   +r
  MMETSP1137-20121227|4418_1  25 DSMLQASAAAPDAKSPDTHDRQPLQAADEIQEGQASQKSSTAVQAAIQSGGKLLLHLAASKRKDAalLITNTLLRCGDqCANVCDSEGFTPLALACR 121
                 567777777777778888999988888999999**********************99877764332267889999875269***********87666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (147 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        98  (0.0238908); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.18u 0.10s 00:00:00.28 Elapsed: 00:00:00.28
# Mc/sec: 669.05
//
Query:       MMETSP1137-20121227|4419_1  [L=174]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (174 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        44  (0.0107265); expected 82.0 (0.02)
Passed bias filter:                       39  (0.00950756); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.15s 00:00:00.34 Elapsed: 00:00:00.39
# Mc/sec: 588.87
//
Query:       MMETSP1137-20121227|4420_1  [L=789]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (789 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       106  (0.0258411); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.48u 0.15s 00:00:00.63 Elapsed: 00:00:00.57
# Mc/sec: 1795.51
//
Query:       MMETSP1137-20121227|4421_1  [L=437]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (437 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        74  (0.01804); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.14s 00:00:00.43 Elapsed: 00:00:00.42
# Mc/sec: 1373.32
//
Query:       MMETSP1137-20121227|4422_1  [L=248]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0033   15.0   0.5     0.0041   14.6   0.3    1.1  1  TIGR03363 VI_chp_8: type VI secretion-associated protein, ImpA family


Domain annotation for each model (and alignments):
>> TIGR03363  VI_chp_8: type VI secretion-associated protein, ImpA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.3   9.9e-07    0.0041     132     282 ..      82     230 ..      57     241 .. 0.77

  Alignments for each domain:
  == domain 1    score: 14.6 bits;  conditional E-value: 9.9e-07
   TIGR03363 132 e.llellravpLtddesgafslldyeraqvenlerkdpeea..kaaieegklseeeleealldtskdflqakaealeaalealqalealvderlGsaapslsplrkaLqallrlverlakdkgle...aeeapaaaadaaedeetgeaataeasaep 282
                 e  l l++ vpLt      ++ll++ r +    +r+d++ea  ++  ++ kl+  +l++  +d+ +   ++  ++++++++ l+++e+  ++rl +   +l++   ++ +l+  ++r+  + +++   +++a+ a+a   e++++ eaa+++a  ++
  MMETSP1137-20121227|4422_1  82 EfILFLATVVPLT------YGLLAFLRYL--TGARSDSGEAdsDDHHKHHKLELTKLARRHKDATEMITRRMEKDMQELQARLDSVEQGQEARLNELHKDLANTYWQVTKLRSDLSRVTPNSPFKgrcLSSAASAVALSTEAQVRPEAAVPDAGSNE 230
                 3555666777888......8888888888..333444444300344577788888888888888889999999****************************************************99988888888888887777777777665554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (248 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       229  (0.0558264); expected 82.0 (0.02)
Passed bias filter:                      179  (0.0436373); expected 82.0 (0.02)
Passed Vit filter:                        20  (0.00487567); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.25u 0.18s 00:00:00.43 Elapsed: 00:00:00.42
# Mc/sec: 779.36
//
Query:       MMETSP1137-20121227|4423_1  [L=161]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        3.6    4.0   7.3        4.2    3.8   5.1    1.0  1  TIGR01645 half-pint: poly-U binding splicing factor, half-pint family


Domain annotation for each model (and alignments):
>> TIGR01645  half-pint: poly-U binding splicing factor, half-pint family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   5.1     0.001       4.2     298     401 ..       3     118 ..       1     124 [. 0.71

  Alignments for each domain:
  == domain 1    score: 3.8 bits;  conditional E-value: 0.001
   TIGR01645 298 avaaaaatakitaaeavagaavlglraqspatassslvtdieakavvssakkeae...evpalpqaapavlkde..........viteekP.....vaPsllaiPslvaplglvaPteinps 401
                 a  +aaa a+ ++  a   +a+l  ++   +++ ++++ +  ak++v  ++ + +   +   l++aap     e          v++ + P     v+    ++Ps +++++ vaP  ++ s
  MMETSP1137-20121227|4423_1   3 A--VAAAVARAHTRIAGGVQASLVSKSSVAIIPRATIALTPHAKPIVPQPMYANAkltQTRGLADAAPPE---EldldvyrgpaVVPRDGPmlemgVRY-EAGVPSPMESIQSVAPIAVSGS 118
                 3..4444455455555555899998999999****************99998777333344566666533...24446777777888888877775555.679*************877655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (161 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        83  (0.020234); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.18u 0.14s 00:00:00.32 Elapsed: 00:00:00.26
# Mc/sec: 817.32
//
Query:       MMETSP1137-20121227|4424_1  [L=208]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.49    6.8  14.2       0.23    7.8   8.5    1.4  1  TIGR02868 CydC: thiol reductant ABC exporter, CydC subunit


Domain annotation for each model (and alignments):
>> TIGR02868  CydC: thiol reductant ABC exporter, CydC subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   8.5   5.7e-05      0.23     117     209 ..       6     100 ..       2     128 .. 0.71

  Alignments for each domain:
  == domain 1    score: 7.8 bits;  conditional E-value: 5.7e-05
   TIGR02868 117 vaDvdalqdllvRvivPlvvAlvvalaavaliallsvaaalvlaaallvalvvaplvslr...aarsaeqalarlrselaaqlldllegaaelvva 209
                   Dvda+ d++  v v +++A +v +a val+a  +  aa+vla +++++++ a+ ++ +     r+a+++   l ++laa++  ++e+++  ++ 
  MMETSP1137-20121227|4424_1   6 DVDVDAVIDVVFAVAVAVCSASIVPAALVALVAPTLA-AAAVLAESAVCTALSAARAASAgaeRLRTAKRTGDGLIESLAAAISVAVECLPPSTIT 100
                 56***************************99998665.5556666666666655544433000345566666666777777777777777665555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (208 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       265  (0.0646026); expected 82.0 (0.02)
Passed bias filter:                      124  (0.0302292); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.25u 0.16s 00:00:00.41 Elapsed: 00:00:00.49
# Mc/sec: 560.28
//
Query:       MMETSP1137-20121227|4425_1  [L=134]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (134 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        65  (0.0158459); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.15s 00:00:00.30 Elapsed: 00:00:00.30
# Mc/sec: 589.55
//
Query:       MMETSP1137-20121227|4426_1  [L=274]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.8e-74  247.7   0.0    2.1e-74  247.5   0.0    1.0  1  TIGR02021 BchM-ChlM: magnesium protoporphyrin O-methyltransferase
    3.5e-13   47.2   0.0    4.9e-13   46.7   0.0    1.2  1  TIGR01983 UbiG: 3-demethylubiquinone-9 3-O-methyltransferase
    3.4e-07   27.3   0.0    4.5e-07   26.9   0.0    1.1  1  TIGR00479 rumA: 23S rRNA (uracil-5-)-methyltransferase RumA
    5.1e-07   27.2   0.4    9.3e-07   26.4   0.2    1.4  1  TIGR03534 RF_mod_PrmC: protein-(glutamine-N5) methyltransferase, release factor-specific
    1.6e-05   22.2   0.2      5e-05   20.5   0.1    1.8  2  TIGR01934 MenG_MenH_UbiE: ubiquinone/menaquinone biosynthesis methyltransferase
    3.8e-05   21.4   0.0    6.8e-05   20.6   0.0    1.4  1  TIGR02072 BioC: biotin biosynthesis protein BioC
    0.00011   19.2   0.1    0.00015   18.7   0.1    1.2  1  TIGR00536 hemK_fam: methyltransferase, HemK family
    0.00027   18.3   0.2    0.00038   17.8   0.1    1.2  1  TIGR00406 prmA: ribosomal protein L11 methyltransferase
    0.00032   17.9   0.0    0.00051   17.3   0.0    1.3  1  TIGR00477 tehB: tellurite resistance protein TehB
    0.00059   17.4   0.0     0.0037   14.8   0.0    2.0  1  TIGR00537 hemK_rel_arch: putative methylase
    0.00073   15.9   0.0     0.0011   15.4   0.0    1.2  1  TIGR04074 bacter_Hen1: 3' terminal RNA ribose 2'-O-methyltransferase Hen1
  ------ inclusion threshold ------
       0.02   11.8   0.1      0.028   11.3   0.1    1.2  1  TIGR01082 murC: UDP-N-acetylmuramate--alanine ligase
      0.021   11.6   0.1      0.027   11.3   0.1    1.2  1  TIGR02085 meth_trns_rumB: 23S rRNA (uracil-5-)-methyltransferase RumB
      0.025   11.8   0.2       0.04   11.1   0.1    1.3  1  TIGR03533 L3_gln_methyl: protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific
      0.028   11.2   0.0      0.041   10.7   0.0    1.2  1  TIGR02143 trmA_only: tRNA (uracil-5-)-methyltransferase


Domain annotation for each model (and alignments):
>> TIGR02021  BchM-ChlM: magnesium protoporphyrin O-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  247.5   0.0   7.7e-77   2.1e-74       1     217 [.      51     270 ..      51     271 .. 0.98

  Alignments for each domain:
  == domain 1    score: 247.5 bits;  conditional E-value: 7.7e-77
   TIGR02021   1 kkeqveeYFdrtaferWarits.deevsrvrqtvreGreamrekllewlpkd..slkGkkvlDAGCGtGllsielAkrGaivkavDiseklvelarkraekedeaenveFevndleslegkfDavvalDvlihYpaediakalerlasltkesvvltfAPktailaalkaiGelfprsdrataielhkekdleralgelgykiskekrvstgfYtselle 217
                 +k++v+eYF++++f rW+ri+s + ev+ v+ ++r+G++++++k+l w+ +d  + +G   +DAGCG G l+ +lA rGa v+a+Dis+++v +a +ra+++  +++ +F  +dle+l+gk+D+v ++Dv+ihYp+++++ ++++la+l++++++++fAP+t +++alk iGelfp+++++t+++lh+e+d+  al++ g+k ++ + + t fY+s+l+e
  MMETSP1137-20121227|4426_1  51 DKAEVKEYFNNEGFSRWNRIYSeEGEVNSVQLDIRTGHAQTVDKVLRWIDEDgtAAAGASFCDAGCGVGSLALPLASRGAMVTASDISDAMVTEATSRAKAAGLSDKATFSTSDLEALQGKYDTVTCIDVMIHYPSDKMSGMVKHLAGLAENRLIISFAPNTWYYRALKSIGELFPGPSKTTRAYLHTEEDVVTALADAGFKTARMEMTGTSFYFSRLIE 270
                 5899******************6669**************************98899*****************************************************************************************************************************************************************99 PP

>> TIGR01983  UbiG: 3-demethylubiquinone-9 3-O-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.7   0.0   1.8e-15   4.9e-13      41     145 ..      99     202 ..      73     220 .. 0.82

  Alignments for each domain:
  == domain 1    score: 46.7 bits;  conditional E-value: 1.8e-15
   TIGR01983  41 lkknekkleglkvlDvGcGgGllseslarlgaevtgiDlseelievAklhakkdplk.kieyelksveelaeeekesfDvvlamEvlEHv..adleeilkecaellkp 145
                 ++++ +  +g ++ D GcG G l+ +la +ga+vt+ D+s+ +++ A++ ak+ +l  k  + ++++e l+     ++D v++++v+ H   ++++ ++k++a l ++
  MMETSP1137-20121227|4426_1  99 IDEDGTAAAGASFCDAGCGVGSLALPLASRGAMVTASDISDAMVTEATSRAKAAGLSdKATFSTSDLEALQG----KYDTVTCIDVMIHYpsDKMSGMVKHLAGLAEN 202
                 34444677899*********************************************9999999999999944....5************7225688889888877655 PP

>> TIGR00479  rumA: 23S rRNA (uracil-5-)-methyltransferase RumA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.9   0.0   1.6e-09   4.5e-07     282     390 ..      92     202 ..      79     219 .. 0.76

  Alignments for each domain:
  == domain 1    score: 26.9 bits;  conditional E-value: 1.6e-09
   TIGR00479 282 vdralealelqge....ekvvDaycGvGtftlplAkqaksvvgvevvkesvekakrnAelngia.nveflageleevlpklskekisadkvllDPpRkGcaaevlreiiklkpk 390
                 vd++l +++  g         Da cGvG+++lplA++ + v++ ++  ++v +a   A+  g+   ++f + +le    k+    +  d+++  P+ k   + +++++  l  +
  MMETSP1137-20121227|4426_1  92 VDKVLRWIDEDGTaaagASFCDAGCGVGSLALPLASRGAMVTASDISDAMVTEATSRAKAAGLSdKATFSTSDLEALQGKYD-TVTCIDVMIHYPSDKM--SGMVKHLAGLAEN 202
                 566666666555411113578*****************************************97269*******99877776.5578888888777665..5555555555555 PP

>> TIGR03534  RF_mod_PrmC: protein-(glutamine-N5) methyltransferase, release factor-specific
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.4   0.2   3.4e-09   9.3e-07      77     162 ..      92     177 ..      69     178 .. 0.86

  Alignments for each domain:
  == domain 1    score: 26.4 bits;  conditional E-value: 3.4e-09
   TIGR03534  77 veaaleel....kkkeklkvlDlgtGsGaIalalakelpdakviavDiseeAlkvarkNakrlglke.veflksdllealeekgkfdlivs 162
                 v+++l+++    + ++ ++++D g+G G +al la++   a v+a+Dis++ ++ a + ak+ gl++ ++f  sdl eal  +gk+d +++
  MMETSP1137-20121227|4426_1  92 VDKVLRWIdedgTAAAGASFCDAGCGVGSLALPLASR--GAMVTASDISDAMVTEATSRAKAAGLSDkATFSTSDL-EAL--QGKYDTVTC 177
                 7888888855443334789****************98..9**************************99*******9.688..999999876 PP

>> TIGR01934  MenG_MenH_UbiE: ubiquinone/menaquinone biosynthesis methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   0.1   1.8e-07     5e-05      39     104 ..     107     172 ..      89     181 .. 0.85
   2 ?   -2.2   0.0       1.6   4.4e+02     190     209 ..     238     257 ..     213     263 .. 0.76

  Alignments for each domain:
  == domain 1    score: 20.5 bits;  conditional E-value: 1.8e-07
   TIGR01934  39 keekvlDvatGtGdlaielakkaeakvtgvDlseemLevakkkakek.eeanvefieadaeeLpfed 104
                 +++ + D  +G G la+ la +  a vt++D+s +m+  a+ +ak+   + +++f ++d e+L  + 
  MMETSP1137-20121227|4426_1 107 AGASFCDAGCGVGSLALPLASRG-AMVTASDISDAMVTEATSRAKAAgLSDKATFSTSDLEALQGKY 172
                 678899*************9977.89*******************999999********99997544 PP

  == domain 2    score: -2.2 bits;  conditional E-value: 1.6
   TIGR01934 190 skeelaallkeagfeevryr 209
                 ++e++++ l +agf+++r++
  MMETSP1137-20121227|4426_1 238 TEEDVVTALADAGFKTARME 257
                 45667788888888888765 PP

>> TIGR02072  BioC: biotin biosynthesis protein BioC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   0.0   2.5e-07   6.8e-05      21     192 ..      93     272 ..      88     274 .] 0.75

  Alignments for each domain:
  == domain 1    score: 20.6 bits;  conditional E-value: 2.5e-07
   TIGR02072  21 kkLlellkekr.kfepakvLdiGcGtGiltrallkrfpqaelialDiseemleqakkkls......nvqficgdieklplekksfDlivSnla.lQW.lddlsevlaelarvlkpgGllafs..tfgketlkElrqlfkqvea.hglrflsleelkallkke.fellkleeelitlsFedvlevl 192
                 +k l++++e + +   a+  d+GcG G l   l++r   +  +a Dis+ m   a ++ +      + +f   d+e l+    ++D +++  + ++   d++s ++++la + ++  ++ f+  t     lk + +lf   ++  +    + e++ ++l+++ f+   +e++  +++F+++ e++
  MMETSP1137-20121227|4426_1  93 DKVLRWIDEDGtAAAGASFCDAGCGVGSLALPLASRGAMV--TASDISDAMVTEATSRAKaaglsdKATFSTSDLEALQ---GKYDTVTCIDVmIHYpSDKMSGMVKHLAGLAENRLIISFApnTWYYRALKSIGELFPGPSKtTRAYLHTEEDVVTALADAgFKTARMEMTGTSFYFSRLIEAV 272
                 56778888877766778999*******9999999998887..**************999999***999*********99...5677777754414442466677788888777777666554336777777777777775455344444455677888888888888888888888888877766 PP

>> TIGR00536  hemK_fam: methyltransferase, HemK family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.1   5.5e-07   0.00015     117     186 ..     110     175 ..      91     182 .. 0.89

  Alignments for each domain:
  == domain 1    score: 18.7 bits;  conditional E-value: 5.5e-07
   TIGR00536 117 hilDlgtGsGcIalalAleipnaeviavDistdalavaeeNaeklkleerveliqsnlleslakqkidli 186
                   +D g+G G  al lA+  +   v+a+Dis   +  a + a+  +l+++  +  s+l e+l++ k+d +
  MMETSP1137-20121227|4426_1 110 SFCDAGCGVGSLALPLASRGA--MVTASDISDAMVTEATSRAKAAGLSDKATFSTSDL-EALQG-KYDTV 175
                 579**************9877..9*************************999999996.77877.77765 PP

>> TIGR00406  prmA: ribosomal protein L11 methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.1   1.4e-06   0.00038     140     231 ..      86     177 ..      69     197 .. 0.87

  Alignments for each domain:
  == domain 1    score: 17.8 bits;  conditional E-value: 1.4e-06
   TIGR00406 140 tGtHettslClelles..ldlkdkkviDvGcGSGiLsiaalklgaakvvavDiDplavesarkNlelNqvsdllqvklenleqkiegkaDviva 231
                 tG+ +t    l + ++      + +  D GcG G L++ ++  ga  v+a Di    v +a + ++  ++sd++   ++ + +  +gk D + +
  MMETSP1137-20121227|4426_1  86 TGHAQTVDKVLRWIDEdgTAAAGASFCDAGCGVGSLALPLASRGA-MVTASDISDAMVTEATSRAKAAGLSDKATFSTS-DLEALQGKYDTVTC 177
                 78888888888888762245567999*****************98.599************************999988.88889999999876 PP

>> TIGR00477  tehB: tellurite resistance protein TehB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.0   1.8e-06   0.00051      76     162 ..     110     196 ..      83     205 .. 0.90

  Alignments for each domain:
  == domain 1    score: 17.3 bits;  conditional E-value: 1.8e-06
   TIGR00477  76 ktldlGcGqGrnslylslaGydvdavdkneasiasveeikekenldlrtavydinaaaldedydfilstvvllfleaervpeiianm 162
                    d GcG G  +l l+  G  v+a d ++a ++   + ++   l+ +++    +  al+ +yd + +  v++   ++++ ++++++
  MMETSP1137-20121227|4426_1 110 SFCDAGCGVGSLALPLASRGAMVTASDISDAMVTEATSRAKAAGLSDKATFSTSDLEALQGKYDTVTCIDVMIHYPSDKMSGMVKHL 196
                 56799*****************************9999999999998888888888899***************9999999999876 PP

>> TIGR00537  hemK_rel_arch: putative methylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   1.4e-05    0.0037      25     107 ..     113     196 ..     103     272 .. 0.70

  Alignments for each domain:
  == domain 1    score: 14.8 bits;  conditional E-value: 1.4e-05
   TIGR00537  25 eiGaGtGlvairlkekgkkivatdinPfavkllkenaklnnv.eldvlesdlfenvegkfdvilfnpPyleleedekrgdyldl 107
                 + G G G +a  l+ +g++++a di+ + v ++   ak  +  +   + +  +e+++gk+d +      +    d+  g +  l
  MMETSP1137-20121227|4426_1 113 DAGCGVGSLALPLASRGAMVTASDISDAMVTEATSRAKAAGLsDKATFSTSDLEALQGKYDTVTCIDVMIHYPSDKMSGMVKHL 196
                 6799****************************99999988752334455555699******99776666666666666665555 PP

>> TIGR04074  bacter_Hen1: 3' terminal RNA ribose 2'-O-methyltransferase Hen1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   3.9e-06    0.0011     281     400 ..     106     216 ..      53     223 .. 0.78

  Alignments for each domain:
  == domain 1    score: 15.4 bits;  conditional E-value: 3.9e-06
   TIGR04074 281 sgarsvlDlGcGegkLlkaLlaekqfekivgvdvsareLekakrrlkldrlsekqrervellqssltYrDkrlkg.fdaavlveviehldeerlkalervvFeaarPklvivttPnaeynv 400
                 +   s +D GcG g L   L++      +++ d+s + +++a++r k   ls+k     ++  s l    + l+g +d+++ ++v+ h   ++++ + + + + a+ +l+i   Pn+ y  
  MMETSP1137-20121227|4426_1 106 AAGASFCDAGCGVGSLALPLASRG--AMVTASDISDAMVTEATSRAKAAGLSDKA----TFSTSDL----EALQGkYDTVTCIDVMIHYPSDKMSGMVKHLAGLAENRLIISFAPNTWYYR 216
                 344689**********99887665..5699*****************99999884....3333443....3344439***************************************98865 PP

>> TIGR01082  murC: UDP-N-acetylmuramate--alanine ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.1    0.0001     0.028       9      50 ..     115     156 ..     114     198 .. 0.73

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 0.0001
   TIGR01082   9 GiGmsalAevlakrgykvsGsDiaenattkrLeklgikifig 50 
                 G G+ +lA  la+rg+ v  sDi++  +t++ ++ ++    +
  MMETSP1137-20121227|4426_1 115 GCGVGSLALPLASRGAMVTASDISDAMVTEATSRAKAAGLSD 156
                 99***********************99888776666554444 PP

>> TIGR02085  meth_trns_rumB: 23S rRNA (uracil-5-)-methyltransferase RumB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.1   9.8e-05     0.027     236     289 ..     110     164 ..      89     207 .. 0.82

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 9.8e-05
   TIGR02085 236 elwdlfcGvGGfglhcaapdikltGieieseaiaaakrsakelGle.nlsfaald 289
                 ++ d  cGvG ++l  a++   +t  +i+   ++ a   ak  Gl+ + +f++ d
  MMETSP1137-20121227|4426_1 110 SFCDAGCGVGSLALPLASRGAMVTASDISDAMVTEATSRAKAAGLSdKATFSTSD 164
                 567889**************************************96255666555 PP

>> TIGR03533  L3_gln_methyl: protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.1   0.00015      0.04     125     193 ..     111     175 ..      92     182 .. 0.84

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 0.00015
   TIGR03533 125 vldlctGsGClaiaaaeafpeaevdavDisedaLevaeenieeyeledrveliqsdlfealegkkydli 193
                   d  +G G la+ +a+    a v a+Dis+  ++ a+   +  +l+d+ +  +sdl eal + kyd +
  MMETSP1137-20121227|4426_1 111 FCDAGCGVGSLALPLAS--RGAMVTASDISDAMVTEATSRAKAAGLSDKATFSTSDL-EAL-QGKYDTV 175
                 56777888888887776..589**********************************8.677.5688876 PP

>> TIGR02143  trmA_only: tRNA (uracil-5-)-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   0.00015     0.041     179     239 ..      89     150 ..      76     169 .. 0.84

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 0.00015
   TIGR02143 179 aavnekmleWalev.leeskgdllelycGnGnfslalaekfekvlateiakssveaaqanie 239
                 a+   k+l W+ e  +  +   + +  cG G ++l+la++   v a +i+ + v  a +  +
  MMETSP1137-20121227|4426_1  89 AQTVDKVLRWIDEDgTAAAGASFCDAGCGVGSLALPLASRGAMVTASDISDAMVTEATSRAK 150
                 556678999987651455555899999***************************99987655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (274 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       131  (0.0319356); expected 82.0 (0.02)
Passed bias filter:                      107  (0.0260848); expected 82.0 (0.02)
Passed Vit filter:                        25  (0.00609459); expected 4.1 (0.001)
Passed Fwd filter:                        15  (0.00365675); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.32u 0.16s 00:00:00.48 Elapsed: 00:00:00.41
# Mc/sec: 882.07
//
Query:       MMETSP1137-20121227|4427_1  [L=520]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (520 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       143  (0.034861); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.18s 00:00:00.55 Elapsed: 00:00:00.45
# Mc/sec: 1525.21
//
Query:       MMETSP1137-20121227|4428_1  [L=216]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.9e-21   71.7   0.5      7e-21   71.4   0.3    1.0  1  TIGR04121 DEXH_lig_assoc: DEXH box helicase, DNA ligase-associated
      5e-08   30.3   0.3    7.2e-07   26.5   0.2    2.0  1  TIGR01587 cas3_core: CRISPR-associated helicase Cas3
    2.4e-06   23.9   0.1      3e-06   23.6   0.1    1.0  1  TIGR03817 DECH_helic: helicase/secretion neighborhood putative DEAH-box helicase
    0.00041   17.0   0.5    0.00052   16.6   0.4    1.1  1  TIGR00643 recG: ATP-dependent DNA helicase RecG
     0.0088   13.0   0.1      0.048   10.6   0.1    2.0  1  TIGR03158 cas3_cyano: CRISPR-associated helicase Cas3, subtype CYANO
  ------ inclusion threshold ------
      0.029   10.0   0.0      0.042    9.4   0.0    1.2  1  TIGR02785 addA_Gpos: helicase-exonuclease AddAB, AddA subunit


Domain annotation for each model (and alignments):
>> TIGR04121  DEXH_lig_assoc: DEXH box helicase, DNA ligase-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.4   0.3     1e-23     7e-21      27     178 ..       6     154 ..       2     164 .. 0.87

  Alignments for each domain:
  == domain 1    score: 71.4 bits;  conditional E-value: 1e-23
   TIGR04121  27 egesglliapTGaGKTlavflpsliela....akekpkkglkvlyitPLkaLakdieraleapieelgleirvelrtGDtssserarqrkkppdiLltTpEslaLllsskdaeklfkdlravvvDElHeLlgskRGdlleLaLarLrrlapelrvv 178
                 ++e+ l+ apTGaGKT  + l+++ ++a    +   +++ l ++y++P+kaLa++i    +++++ l+l   v   tGD + ++r+       +iL+tTpE+  + +++k a++l++++  +++DE+H Ll+  RG  +e  +ar  rl ++ + +
  MMETSP1137-20121227|4428_1   6 SQENMLVCAPTGAGKTNVALLAIMQQVAtafeNGVLQRDKLXLVYVAPMKALAQEIVGKFSKALAPLALV--VREYTGDMQLTKREIM---ATQILVTTPEKWDV-VTRKGADTLVQSVGLLIIDEVH-LLNDERGPVIEAVVARTLRLVESSQQM 154
                 56889**********************976544455669*************************998875..6789****99988765...579*********97.57999*****************.77899**********987777666555 PP

>> TIGR01587  cas3_core: CRISPR-associated helicase Cas3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.5   0.2   1.1e-09   7.2e-07       2     151 ..      10     144 ..       9     155 .. 0.74

  Alignments for each domain:
  == domain 1    score: 26.5 bits;  conditional E-value: 1.1e-09
   TIGR01587   2 lvieAPtGyGKteaallwalk........likkqkadkvifalPtratanamyerlkelfgselvlllksassrkikekgdseeleklvklysksnkkvflkpitvctidqvlksvlkevgeaeitlasianSvliiDEvhayeeytkalllallevl 151
                 +++ APtG+GKt++all  ++         + ++ +  ++++ P++a+a ++  ++++++   l l  +              e+   ++l+ ++   +++++i v+t+++  +   k    a++   s    +liiDEvh+++++    ++a++ + 
  MMETSP1137-20121227|4428_1  10 MLVCAPTGAGKTNVALLAIMQqvatafenGVLQRDKLXLVYVAPMKALAQEIVGKFSKALAP-LALVVR--------------EYTGDMQLTKRE---IMATQILVTTPEKWDVVTRK---GADTLVQS--VGLLIIDEVHLLNDERGPVIEAVVART 144
                 5799************99888444322222234455567999******************95.666666..............566666776644...8999*******997655544...34444444..4689*********99988888888765 PP

>> TIGR03817  DECH_helic: helicase/secretion neighborhood putative DEAH-box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.6   0.1   4.4e-09     3e-06      52     189 ..       8     149 ..       3     155 .. 0.83

  Alignments for each domain:
  == domain 1    score: 23.6 bits;  conditional E-value: 4.4e-09
   TIGR03817  52 ehvvvatgtasGkslayllPvlsalaed........pratalylaPtkalaadqlrav.keleerdvraatydGdtpaeerewirekaryvltnPdmlhlgilpsharWakflralryvvvdechsyrGvfGshvalvlrrlrrlca 189
                 e++ v++ t +Gk+   ll +++++a++         +   +y+aP kala++ + +  k+l    + +  y Gd +  +re +   +++++t P+   +      +   ++++++  +++de+h      G  + +v+ r +rl++
  MMETSP1137-20121227|4428_1   8 ENMLVCAPTGAGKTNVALLAIMQQVATAfengvlqrDKLXLVYVAPMKALAQEIVGKFsKALAPLALVVREYTGDMQLTKREIMA--TQILVTTPEKWDVVTR---KGADTLVQSVGLLIIDEVHLLNDERGPVIEAVVARTLRLVE 149
                 67899********************99977777764477889***********9976526788999****************985..5689999*98765433...33457899999********9998888888888888888765 PP

>> TIGR00643  recG: ATP-dependent DNA helicase RecG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.4   7.6e-07   0.00052     259     334 ..      10      95 ..       4     127 .. 0.80

  Alignments for each domain:
  == domain 1    score: 16.6 bits;  conditional E-value: 7.6e-07
   TIGR00643 259 RLlqGdVGsGKTvVavlallavi....esGy....q..valmaPTeiLAeQhyeklrelleplgievalLtgslkkkkkkelleei 334
                  L+    G+GKT Va+la+++ +    e+G     +   + +aP   LA+  + k+++ l+pl++ v   tg+++  k++ +  +i
  MMETSP1137-20121227|4428_1  10 MLVCAPTGAGKTNVALLAIMQQVatafENGVlqrdKlxLVYVAPMKALAQEIVGKFSKALAPLALVVREYTGDMQLTKREIMATQI 95 
                 5777778*************9772222455332222113557***********************************999998887 PP

>> TIGR03158  cas3_cyano: CRISPR-associated helicase Cas3, subtype CYANO
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.6   0.1     7e-05     0.048      17      42 ..      10      35 ..       4     146 .. 0.79

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 7e-05
   TIGR03158 17 llntAptGaGKtlaalvevlseeldt 42
                +l  AptGaGKt+ al+ ++++   +
  MMETSP1137-20121227|4428_1 10 MLVCAPTGAGKTNVALLAIMQQVATA 35
                6778*************999987555 PP

>> TIGR02785  addA_Gpos: helicase-exonuclease AddAB, AddA subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   0.0   6.1e-05     0.042      13      50 ..       6      48 ..       3      89 .. 0.76

  Alignments for each domain:
  == domain 1    score: 9.4 bits;  conditional E-value: 6.1e-05
   TIGR02785 13 kgqdiLVsAsAGSGKTaVLveRiikkilsg.....vdvdrLLv 50
                + +++LV A  G GKT V    i++++++       + d+L +
  MMETSP1137-20121227|4428_1  6 SQENMLVCAPTGAGKTNVALLAIMQQVATAfengvLQRDKLXL 48
                568************************9875555556666644 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (216 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       143  (0.034861); expected 82.0 (0.02)
Passed bias filter:                      107  (0.0260848); expected 82.0 (0.02)
Passed Vit filter:                        26  (0.00633837); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.28u 0.15s 00:00:00.43 Elapsed: 00:00:00.41
# Mc/sec: 695.36
//
Query:       MMETSP1137-20121227|4429_1  [L=372]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00014   19.1   0.0    0.00021   18.5   0.0    1.2  1  TIGR01983 UbiG: 3-demethylubiquinone-9 3-O-methyltransferase
  ------ inclusion threshold ------
      0.015   13.0   0.0      0.023   12.3   0.0    1.3  1  TIGR02072 BioC: biotin biosynthesis protein BioC
      0.046   10.8   0.0      0.085   10.0   0.0    1.4  1  TIGR01934 MenG_MenH_UbiE: ubiquinone/menaquinone biosynthesis methyltransferase


Domain annotation for each model (and alignments):
>> TIGR01983  UbiG: 3-demethylubiquinone-9 3-O-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.0   1.5e-07   0.00021      72     152 ..     130     206 ..      81     208 .. 0.82

  Alignments for each domain:
  == domain 1    score: 18.5 bits;  conditional E-value: 1.5e-07
   TIGR01983  72 aevtgiDlseelievAklhakkdplkkieyelksveelaeeekesfDvvlamEvlEHvadleeilkecaellkpggilfls 152
                 +    iD ++++   Ak+  ++dp+  +   ++++  ++   ++s D ++a+ vlEH+ d+   +++ +++l+pgg+++++
  MMETSP1137-20121227|4429_1 130 VRTLTIDFTKDMAILAKNCFHADPVD-LVSDAQTLSGVS---SNSLDGIMAFHVLEHMVDPLGAIEAWLRVLRPGGVVMFA 206
                 34568********************7.555666666664...5589*******************************9986 PP

>> TIGR02072  BioC: biotin biosynthesis protein BioC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   1.7e-05     0.023      36     134 ..     104     207 ..      75     211 .. 0.75

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 1.7e-05
   TIGR02072  36 akvLdiG.cG.tGiltrallkrfpq.aelialDiseemleqakkkls..nvqficgdieklp.lekksfDlivSnlalQWlddlsevlaelarvlkpgGllafst 134
                 ++v +iG cG + ++   l+ r+++ ++ +++D+ + m   ak+  +   v+ +  d+++l+ +  +s+D i++  +l  + d+  +++   rvl+pgG+++f+ 
  MMETSP1137-20121227|4429_1 104 RNVAEIGpCGlPCHYQPYLSPRLQKrVRTLTIDFTKDMAILAKNCFHadPVD-LVSDAQTLSgVSSNSLDGIMAFHVLEHMVDPLGAIEAWLRVLRPGGVVMFAV 207
                 5666666666444455555555544145889************988864444.557888887356677***********************************85 PP

>> TIGR01934  MenG_MenH_UbiE: ubiquinone/menaquinone biosynthesis methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.0   6.2e-05     0.085      64     140 ..     131     204 ..     121     213 .. 0.84

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 6.2e-05
   TIGR01934  64 kvtgvDlseemLevakkkakekeeanvefieadaeeLp.fednsfdavtiafGlRNvtdiekaLkelaRVlkpggrlv 140
                 + + +D++++m  +ak+ +++    +v+ +++da++L+ +++ns+d +   + l  ++d   a++   RVl+pgg ++
  MMETSP1137-20121227|4429_1 131 RTLTIDFTKDMAILAKNCFHAD---PVD-LVSDAQTLSgVSSNSLDGIMAFHVLEHMVDPLGAIEAWLRVLRPGGVVM 204
                 5678999999999998887543...455.5689999999*********8888999********************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (372 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        65  (0.0158459); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.29u 0.16s 00:00:00.44 Elapsed: 00:00:00.36
# Mc/sec: 1363.89
//
Query:       MMETSP1137-20121227|4430_1  [L=356]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.6e-56  188.8   0.2    3.6e-56  188.3   0.1    1.0  1  TIGR02749 prenyl_cyano: solanesyl diphosphate synthase
    4.7e-30  102.6   0.0    6.2e-30  102.2   0.0    1.1  1  TIGR02748 GerC3_HepT: heptaprenyl diphosphate synthase component II


Domain annotation for each model (and alignments):
>> TIGR02749  prenyl_cyano: solanesyl diphosphate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  188.3   0.1   1.8e-59   3.6e-56       8     318 ..      20     350 ..      17     352 .. 0.88

  Alignments for each domain:
  == domain 1    score: 188.3 bits;  conditional E-value: 1.8e-59
   TIGR02749   8 apvekdlealtknlkslv.....G....akhPilsaaaehlfeagGkrlrPaivllvsrataeeeeltarhrrlaeitelihtaslvhddvvdesdvrrgvet.....vhslfdtrvavlaGdflfaqaswylanlenlevvkllskvikdfaeGeikq....glnrfdsdlsledyleksyyktaslvaasskaaavls..evdsevaedlyeyGkhlGlafqvvddildftgsteklGkPaasdlkkGnltaPvlfaleeepklselierefsekkdlekalelvkeskaikkarelakekaqlalkslevlpksaskealkelvefvl 318
                 ++v++dl+++++ +k+++     G    + + +l+ aa+++++  Gk +rP +vll+ rat  +  +  rh +la i e+ihtasl+hd+v++e +v   + t     v+ + +++v +laGdfl+a+a+  l+ l+  ev +++++ ++ ++eG +           +s  +l++yl+ ++   + l+ + +++ a++s   +ds++a++   +G +lG+a q+v +  ++ +  ++  +      +   l+aP+l+a + +p+l+++i+r fse++d  +a+ l+ +s+a+++++ela+++aq+a ++le+lp+sa++ al  l + vl
  MMETSP1137-20121227|4430_1  20 KLVANDLDHIKTSIKKVLsdnrgGsgalSSNEVLTMAAREFMQRKGKSFRPMLVLLIGRATDPDFSIGPRHYKLAVISEMIHTASLIHDNVLEEGEVDTTQGTlvhqeVNVDVGNKVCILAGDFLLAKAAVELSLLDCAEVTEIVARGLESICEGGMLAydagQRDGIESVPTLDEYLHITHREISELIGNCCQCSAIISghAADSAIAQACLLFGLELGMAQQLVAEADEMEALLKQCRRSPRKWPRAVPLSAPLLHAADAHPQLRDMIKRGFSEAQDAASAIALIDKSDAVRHTQELAERRAQEAAEALELLPNSATRTALVVLCHKVL 350
                 67889999999999988744443222334689*************************************************************988876655532222677889*****************************************987522112234677889**************************9434688999*******************99999999999888888889999************************************************************************99988765 PP

>> TIGR02748  GerC3_HepT: heptaprenyl diphosphate synthase component II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.2   0.0     3e-33   6.2e-30       6     309 ..      19     344 ..      16     350 .. 0.85

  Alignments for each domain:
  == domain 1    score: 102.2 bits;  conditional E-value: 3e-33
   TIGR02748   6 ysflkedieviekelekavq.........aeaevlkeaalellkaGGkrirPvfvllagklgdydld...klkkvavalelihmaslvhddviddaelrrGket.....ikskwdnriamytGdyllaksletiteiedprvhkilsktivevclGeieqi....kdkynfdqnlrtylrrikrktalliaascqlGaivag..adeeivkklyyfgyyvGmsyqiiddildfvgteeelGkPaGedllqGnvtlPvlyale.dealkkklekvleettaeeleelieevkksdaiekalavsdlylkkalelldelPkseakkalke 309
                 y+ + +d++ i++ ++k ++         +++evl+ aa e+++  Gk  rP++vll g+ +d d++   +  k+av  e+ih asl+hd+v+++ e+   + t     ++   +n++ + +Gd+llak+  +++ ++  +v +i+++ +  +c G +       +d  +   +l +yl   +r  + li   cq  ai++g  ad++i ++   fg  +Gm+ q++ +  ++ +  ++  +   +  +   ++ P l+a + +++l+  +++ ++e   ++ ++ i+ + ksda+ ++++++++  + a e+l+ lP+s +++al  
  MMETSP1137-20121227|4430_1  19 YKLVANDLDHIKTSIKKVLSdnrggsgalSSNEVLTMAAREFMQRKGKSFRPMLVLLIGRATDPDFSigpRHYKLAVISEMIHTASLIHDNVLEEGEVDTTQGTlvhqeVNVDVGNKVCILAGDFLLAKAAVELSLLDCAEVTEIVARGLESICEGGMLAYdagqRDGIESVPTLDEYLHITHREISELIGNCCQCSAIISGhaADSAIAQACLLFGLELGMAQQLVAEADEMEALLKQCRRSPRKWPRAVPLSAPLLHAADaHPQLRDMIKRGFSEA--QDAASAIALIDKSDAVRHTQELAERRAQEAAEALELLPNSATRTALVV 344
                 66667777777777776664222221222467999***************************9999744467789*******************999887665522222677899*****************************************986432222778888899***************************944567899*****************************999999999999********9972556999999988875..567889999********************************9999865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (356 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       132  (0.0321794); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.29u 0.13s 00:00:00.42 Elapsed: 00:00:00.51
# Mc/sec: 921.34
//
Query:       MMETSP1137-20121227|4431_1  [L=402]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.8e-12   43.3   3.8    0.00017   17.9   0.1    3.1  3  TIGR03591 polynuc_phos: polyribonucleotide nucleotidyltransferase
     0.0001   19.9   7.0        0.3    8.7   0.1    3.8  3  TIGR03665 arCOG04150: arCOG04150 universal archaeal KH domain protein
  ------ inclusion threshold ------
      0.034   11.0   0.1        2.9    4.6   0.0    2.4  2  TIGR01953 NusA: transcription termination factor NusA


Domain annotation for each model (and alignments):
>> TIGR03591  polynuc_phos: polyribonucleotide nucleotidyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.1   3.5e-07   0.00048     551     592 ..      35      76 ..      18      89 .. 0.89
   2 !    8.6   0.0   8.2e-05      0.11     562     591 ..     143     172 ..     131     198 .. 0.82
   3 !   17.9   0.1   1.3e-07   0.00017     554     620 ..     310     383 ..     298     386 .. 0.81

  Alignments for each domain:
  == domain 1    score: 16.5 bits;  conditional E-value: 3.5e-07
   TIGR03591 551 rietikinkdkireviGkgGkvireiieetgakidieddGtv 592
                 r+ ++ +++  + ++iGkgG v++ i+ee+g++i+i+d+ ++
  MMETSP1137-20121227|4431_1  35 RYLKMLLPERDVSKIIGKGGLVLKGICEESGSRIKISDKDEI 76 
                 66788899999***************************8765 PP

  == domain 2    score: 8.6 bits;  conditional E-value: 8.2e-05
   TIGR03591 562 ireviGkgGkvireiieetgakidieddGt 591
                  ++v+G+gG+ i+e++e++ga+i++++   
  MMETSP1137-20121227|4431_1 143 CGAVMGRGGAFIKELMESSGATIKVSQPND 172
                 578**********************98644 PP

  == domain 3    score: 17.9 bits;  conditional E-value: 1.3e-07
   TIGR03591 554 tikinkdkireviGkgGkvireiieetgakidiedd........Gtvkiaaadkeaaekakklieeitaevevgk 620
                 +++++   + +viGkgG+v+r+i+++tg+ki+ + +         t++i++++ +++e+a+++i + ++  e g+
  MMETSP1137-20121227|4431_1 310 EMSLSDRAVSAVIGKGGSVVRDIVNATGSKIHASPKapdkpeadRTITITGTN-HQIEMARQIIMQRVQMLEAGQ 383
                 577888899**********************9753322223333889998876.57999******9999999987 PP

>> TIGR03665  arCOG04150: arCOG04150 universal archaeal KH domain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.7   0.1   0.00022       0.3     100     144 ..      46      90 ..      39     104 .. 0.79
   2 !    4.3   0.0    0.0046       6.3       9      45 ..     143     179 ..     136     198 .. 0.78
   3 !    7.9   0.5   0.00038      0.52      98     146 ..     316     373 ..     310     389 .. 0.74

  Alignments for each domain:
  == domain 1    score: 8.7 bits;  conditional E-value: 0.00022
   TIGR03665 100 kgriIGeeGktrkiieeltgvkisvygktvsiiGeieqvkiareA 144
                  ++iIG++G + k i e +g++i +++k   i G+ e+++++   
  MMETSP1137-20121227|4431_1  46 VSKIIGKGGLVLKGICEESGSRIKISDKDEIIPGTRERIATISGP 90 
                 568999999999999999999999999988888888888776555 PP

  == domain 2    score: 4.3 bits;  conditional E-value: 0.0046
   TIGR03665   9 igvliGkkgevkkeieektkvkleidseegevkveee 45 
                  g+++G++g + ke++e+ ++++++ + + +++ ++e
  MMETSP1137-20121227|4431_1 143 CGAVMGRGGAFIKELMESSGATIKVSQPNDMIAATQE 179
                 5788899999999999999999999988888887533 PP

  == domain 3    score: 7.9 bits;  conditional E-value: 0.00038
   TIGR03665  98 rikgriIGeeGktrkiieeltgvkisvy.........gktvsiiGeieqvkiareAie 146
                 r  + +IG++G + + i + tg+ki  +         ++t++i G+ +q+++ar+ i 
  MMETSP1137-20121227|4431_1 316 RAVSAVIGKGGSVVRDIVNATGSKIHASpkapdkpeaDRTITITGTNHQIEMARQIIM 373
                 5556799999999999999999999875333333333579999999999999998764 PP

>> TIGR01953  NusA: transcription termination factor NusA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   0.0    0.0037         5     299     339 ..      34      74 ..      26      75 .. 0.85
   2 ?    4.6   0.0    0.0021       2.9     302     334 ..     309     341 ..     302     346 .. 0.86

  Alignments for each domain:
  == domain 1    score: 3.8 bits;  conditional E-value: 0.0037
   TIGR01953 299 kksaevvveeeqlslaiGkeGqNvrLaskLtgwkidvktes 339
                  +  +++++e ++s+ iGk+G   + + + +g++i +  ++
  MMETSP1137-20121227|4431_1  34 VRYLKMLLPERDVSKIIGKGGLVLKGICEESGSRIKISDKD 74 
                 566788999************99999999999999998765 PP

  == domain 2    score: 4.6 bits;  conditional E-value: 0.0021
   TIGR01953 302 aevvveeeqlslaiGkeGqNvrLaskLtgwkid 334
                  e+ +++  +s +iGk+G+ vr + + tg+ki 
  MMETSP1137-20121227|4431_1 309 LEMSLSDRAVSAVIGKGGSVVRDIVNATGSKIH 341
                 5677899999************99999999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (402 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       143  (0.034861); expected 82.0 (0.02)
Passed bias filter:                      121  (0.0294978); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.35u 0.16s 00:00:00.51 Elapsed: 00:00:00.49
# Mc/sec: 1082.85
//
Query:       MMETSP1137-20121227|4432_1  [L=170]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (170 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       159  (0.0387616); expected 82.0 (0.02)
Passed bias filter:                      109  (0.0265724); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.16s 00:00:00.31 Elapsed: 00:00:00.36
# Mc/sec: 623.28
//
Query:       MMETSP1137-20121227|4433_1  [L=420]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.2e-17   62.0   1.2    3.2e-17   60.7   0.8    1.6  1  TIGR02923 AhaC: ATP synthase A1, C subunit


Domain annotation for each model (and alignments):
>> TIGR02923  AhaC: ATP synthase A1, C subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.7   0.8   7.8e-21   3.2e-17      14     332 ..       7     337 ..       4     347 .. 0.83

  Alignments for each domain:
  == domain 1    score: 60.7 bits;  conditional E-value: 7.8e-21
   TIGR02923  14 amksrLlkeekfrellemegldeivrfleeteYkkeldelgskyegvelvekALdanLAktyekllrispgalrdliraylkkfDvrNiktliraklanlsaeevedllieaGevsekklkeLaeaksieEive.aLegTeyegvlsealaeye.esgklstlEneLdkvyyeeLlkavgspsdkekklfaefiklevDikNlktilrlkadgl..sadeiselli....egGyelkeek....lkeLaevesidevvsalegt.kYgeavsealeeleeaksvavlEraldeallk...kakklslrkPlsvvpvlsyilkKevEvknlrviar 332
                   ++ +l++ ++ +l + e++d+++ +l +t+Y + l++  s  +++ l ek L  +L   ++ l   + + l  ++  +  k+ + Ni  ++++ l n +++e+ ++  ++G++++    +L  a++  E+ +  L +T+  + +s++l++ + +++++  + n L+k+y+e+  +   ++ ++  +++ + ++le D + + ++l   ++    ++ ++   +i    ++   ++e+k    + ++a+  ++d v +a++   +Y +a++  l++ ++   +   E+ l++ + +   k + l+ ++ +  +   +y+  Ke+E++n+  ia 
  MMETSP1137-20121227|4433_1   7 GYRAGILTDADYVNLRQCESIDDMKMHLAGTDYGNFLQNEPSPISSGTLQEK-LTEKLVDEFNFLRSQAVEPLATFMDYITYKYMIDNIMLVLTGTLNNRDTNELLEKCHPLGKFDSM--ATLCIASTASELYRmVLVDTPLGKYFSDCLSSQDlDEINIEIIRNTLYKAYLEDFHSFCSKVGGSTAEVMSDILELEADRRAINITLNSLNEMSiiKVRDSLYPTIgrlyPNSTGISEKKgnayVSKMAQAIELDAVRNAVDAFpEYKKALE-GLSAATSGPGIEEGEKPLEKEFDElevKLNTLAFEQQFHYGMYYAYVKLKEQEIRNIVWIAD 337
                 567889*********************************9888888887776.99************************************************************865..9999999999*9862599************98765899*************************************************87554331222222222221112444455555444447888888889999999988547888888.777788888888777777666554111456688899********************987765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (420 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       126  (0.0307167); expected 82.0 (0.02)
Passed bias filter:                      112  (0.0273038); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.31u 0.20s 00:00:00.51 Elapsed: 00:00:00.44
# Mc/sec: 1259.90
//
Query:       MMETSP1137-20121227|4434_1  [L=189]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (189 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        58  (0.0141394); expected 82.0 (0.02)
Passed bias filter:                       39  (0.00950756); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.18s 00:00:00.32 Elapsed: 00:00:00.70
# Mc/sec: 356.37
//
Query:       MMETSP1137-20121227|4435_1  [L=413]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (413 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        61  (0.0148708); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.15s 00:00:00.42 Elapsed: 00:00:00.78
# Mc/sec: 698.87
//
Query:       MMETSP1137-20121227|4436_1  [L=86]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (86 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        85  (0.0207216); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.18s 00:00:00.31 Elapsed: 00:00:00.28
# Mc/sec: 405.40
//
Query:       MMETSP1137-20121227|4437_1  [L=757]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (757 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       144  (0.0351048); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.16s 00:00:00.62 Elapsed: 00:00:00.44
# Mc/sec: 2270.81
//
Query:       MMETSP1137-20121227|4438_1  [L=710]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.9e-34  116.4   0.0      4e-34  115.9   0.0    1.2  1  TIGR01351 adk: adenylate kinases
    2.7e-12   44.8   0.0    7.8e-12   43.3   0.0    1.7  2  TIGR01359 UMP_CMP_kin_fam: UMP-CMP kinase family
    2.4e-11   41.5   0.0    5.8e-11   40.2   0.0    1.6  1  TIGR01360 aden_kin_iso1: adenylate kinase


Domain annotation for each model (and alignments):
>> TIGR01351  adk: adenylate kinases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  115.9   0.0   2.9e-37     4e-34       1     209 [.     158     358 ..     158     361 .. 0.90

  Alignments for each domain:
  == domain 1    score: 115.9 bits;  conditional E-value: 2.9e-37
   TIGR01351   1 rlvllGpPGsGKGTqakrlaeklglvhistGdllRaevkkktelgkkakeylekGklvpdeiviklvkerleeeedeekgfiLDGfPRtleQaeaLdelleelglkldavielkvpdevlverisgRricpkcgkvynlkfkkpkvecddctaellkqReDDteevvkkRlevYkeqteplieyYkkkgk.lveidaekkieevlkeile 209
                 r++l+G P sGKGT+a  l++ +    +s G+llR e +++t+ g+ a+e + +    +d++v +l+ +rl e ++ ++g+++DGfPR+ +Qa+aL +     +l+ d+v+ l+ p+e + e + gR++++++g++y+ ++++p     ++ + +l+ R DD +evv++R+++ +++ +++  ++++ g+ ++ +d+ ++  e ++ei +
  MMETSP1137-20121227|4438_1 158 RILLIGGPSSGKGTIAPMLSHAFRARALSVGQLLRGEARARTQRGRFASEAMAAA---SDALVFSLLLDRLGE-DAWHQGWLIDGFPRSAAQARALLSDA-YPELRPDVVVLLNRPRELVKEFMLGRMTDTATGQTYHPTYAPPP----AEVGCRLVWRVDDVPEVVERRIKQAEASLDSIARIFSEAGVpVCAFDNARSELETFAEIAA 358
                 589*************************************************986...8************88.77899***************997654.46789************************************995....344456788*****************************99834558888877777777765 PP

>> TIGR01359  UMP_CMP_kin_fam: UMP-CMP kinase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.3   0.0   5.7e-15   7.8e-12       3     128 ..     160     281 ..     158     288 .. 0.90
   2 ?   -2.5   0.0      0.63   8.6e+02     132     162 ..     307     337 ..     305     358 .. 0.76

  Alignments for each domain:
  == domain 1    score: 43.3 bits;  conditional E-value: 5.7e-15
   TIGR01359   3 fvlGgPGsGkGtqCakiveefkfvhlsaGdllreeikregseegelieslikeGkivPsevtvellekaikeseeskkflidGfPrneenleaweklidekvevkfvlfldcseevmvkrllkrgq 128
                 +++GgP sGkGt+   ++++f+   ls G+llr e +    + g+  ++ +        ++  +ll +++ e+  ++ +lidGfPr++    a       ++ +++v+ l+ ++e + + +l r  
  MMETSP1137-20121227|4438_1 160 LLIGGPSSGKGTIAPMLSHAFRARALSVGQLLRGEAR-ARTQRGRFASEAMAAA---SDALVFSLLLDRLGEDAWHQGWLIDGFPRSAAQARALLSDAYPELRPDVVVLLNRPRELVKEFMLGRMT 281
                 578*******************************998.6789999988887654...4677899*******************************99999***************99999998865 PP

  == domain 2    score: -2.5 bits;  conditional E-value: 0.63
   TIGR01359 132 rvddnieslkkrletykeetlpvieyfekkn 162
                 rvdd  e +++r+++ + +   +   f++++
  MMETSP1137-20121227|4438_1 307 RVDDVPEVVERRIKQAEASLDSIARIFSEAG 337
                 8999999999999988877777777776655 PP

>> TIGR01360  aden_kin_iso1: adenylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.2   0.0   4.2e-14   5.8e-11       6     103 ..     159     252 ..     154     288 .. 0.81

  Alignments for each domain:
  == domain 1    score: 40.2 bits;  conditional E-value: 4.2e-14
   TIGR01360   6 ifivGGpGsGkGtqcekivekyGfthlssGdllreevasgsergkklqaimekGelvpldvvldllkeallkalekskGflidGyprevkqGeefekr 103
                 i ++GGp sGkGt    + + +    ls G+llr e  + ++rg+   + m+     +   v++ll + l + +   +G+lidG+pr  +q + + + 
  MMETSP1137-20121227|4438_1 159 ILLIGGPSSGKGTIAPMLSHAFRARALSVGQLLRGEARARTQRGRFASEAMAA---ASDALVFSLLLDRLGEDA-WHQGWLIDGFPRSAAQARALLSD 252
                 6789*******************************************999986...467889999999886654.579*************9876554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (710 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       107  (0.0260848); expected 82.0 (0.02)
Passed bias filter:                      102  (0.0248659); expected 82.0 (0.02)
Passed Vit filter:                        22  (0.00536324); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.47u 0.17s 00:00:00.64 Elapsed: 00:00:00.57
# Mc/sec: 1615.73
//
Query:       MMETSP1137-20121227|4439_1  [L=282]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (282 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        97  (0.023647); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.11s 00:00:00.34 Elapsed: 00:00:00.33
# Mc/sec: 1127.91
//
Query:       MMETSP1137-20121227|4440_1  [L=326]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (326 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       341  (0.0831302); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.14s 00:00:00.40 Elapsed: 00:00:00.38
# Mc/sec: 1132.33
//
Query:       MMETSP1137-20121227|4441_1  [L=966]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (966 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       168  (0.0409556); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.58u 0.14s 00:00:00.72 Elapsed: 00:00:01.11
# Mc/sec: 1148.66
//
Query:       MMETSP1137-20121227|4443_1  [L=430]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.5e-69  229.4   0.2    1.2e-68  228.8   0.1    1.2  1  TIGR03465 HpnD: squalene synthase HpnD
    1.9e-43  146.7   0.1    2.5e-43  146.3   0.1    1.2  1  TIGR03464 HpnC: squalene synthase HpnC
    9.6e-07   26.1   0.0    2.6e-06   24.7   0.0    1.6  2  TIGR01559 squal_synth: farnesyl-diphosphate farnesyltransferase


Domain annotation for each model (and alignments):
>> TIGR03465  HpnD: squalene synthase HpnD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  228.8   0.1     9e-72   1.2e-68       2     266 ..     150     421 ..     149     422 .. 0.96

  Alignments for each domain:
  == domain 1    score: 228.8 bits;  conditional E-value: 9e-72
   TIGR03465   2 aaasgssfyyamrlLpeekrealtalyAfcrevddivde.eldpevkqakLdwwraeidrlya.GapehpvakaLadaarrfk.lpqedllevidGmemDleqeryedfaeLklYcdrvAgavGrlsarif....GasdeetrelAehlGlAlqltnilrdvgeDaergRiYLPaeeLqrfgvaaadilearaspalaallaeqaeraralyaealallpaadrraqraalimaaiyralldeieadgfqvlrqrvkltklrklwialrtll 266
                 +++ ++ fy + ++  eekr+a+ a+yA+cr++ddivd+  ++    + +L++w+ +++ +++ G++ + ++ aL d+++r++ l  e ++++i+Gm mDl+q+r+e+f+eL +Yc+rvAg+vG +++ i+    Ga+ ee+ e A +lG+Alqltn lrdvge   r RiYLP+e+L+rf+v++a +l++ ++++ +all++q +rar++y +a   ++ +   a  ++++   +y+++l++ie++ +++ ++r    k++kl+i+ r +l
  MMETSP1137-20121227|4443_1 150 TEQYAKTFYFGTKFFSEEKRRAVWAVYAWCRRLDDIVDKpRKNTGSLRDELAEWKLRLHDIFDhGRAWDMLDLALVDTVKRYPaLSVEPFEDMIKGMVMDLDQNRFETFEELYVYCYRVAGTVGLMTMPIMgvapGATFEEALEPALALGVALQLTNXLRDVGEXRVRQRIYLPQEDLRRFNVTEAALLKGVHDERYVALLKFQIARAREWYGRAEDGIALLAEDARLPVRASLDMYSTILNKIEQNXYDNFNKRAYTAKWEKLMILPRSWL 421
                 6778999********************************5566778899************998******************64799********************************************777777889999******************************************************************************************************************************997 PP

>> TIGR03464  HpnC: squalene synthase HpnC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  146.3   0.1   1.8e-46   2.5e-43       9     264 ..     157     418 ..     149     421 .. 0.92

  Alignments for each domain:
  == domain 1    score: 146.3 bits;  conditional E-value: 1.8e-46
   TIGR03464   9 FpVaslllpkrlrapvaalYafaRtaDDlaDegsasaeerlalLdalraeLdavaegepa.aplleaLaetvrer.slpiepfldLleAfrqDvsvkryatfeelldYCrrSAnPvGrlvLdlagasd....eerlalsdaiCtalQlinflqDvseDlrkdRvYlpaddlerfgvseedlaaaqataavrellafeverarallkegapLvaevdgrlglelalivrggerilekieaagydvlrerpklkkadllvlllr 264
                 F  ++ +  ++ r+ v a+Ya++R  DD+ D++  +     ++L++++ +L+ ++++ +a   l  aL +tv+++ +l +epf+d+++ +++D +++r++tfeel  YC r A  vG + + ++g +     ee+l+ + a+ +alQl+n l+Dv+e   ++R+Ylp++dl+rf+v+e+ l ++  +++  +ll+f+++rar+ + +++   a ++  ++l ++    +  +il+kie+  yd +++r   +k+++l++l r
  MMETSP1137-20121227|4443_1 157 FYFGTKFFSEEKRRAVWAVYAWCRRLDDIVDKPRKNTGSLRDELAEWKLRLHDIFDHGRAwDMLDLALVDTVKRYpALSVEPFEDMIKGMVMDLDQNRFETFEELYVYCYRVAGTVGLMTMPIMGVAPgatfEEALEPALALGVALQLTNXLRDVGEXRVRQRIYLPQEDLRRFNVTEAALLKGVHDERYVALLKFQIARAREWYGRAEDGIALLAEDARLPVRASLDMYSTILNKIEQNXYDNFNKRAYTAKWEKLMILPR 418
                 77778888999**********************999999999*************997764677789*****9985799*****************************************99998654111278888999********************************************************************************************************************998765 PP

>> TIGR01559  squal_synth: farnesyl-diphosphate farnesyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0      0.23   3.1e+02       4      47 ..     144     187 ..     141     193 .. 0.82
   2 !   24.7   0.0   1.9e-09   2.6e-06     111     206 ..     239     330 ..     216     355 .. 0.79

  Alignments for each domain:
  == domain 1    score: -1.9 bits;  conditional E-value: 0.23
   TIGR01559   4 krcyellnlvsrsfavvikeleaelrdavvifylvlraldtved 47 
                 + c  + ++ +++f    k +++e r av   y   r ld + d
  MMETSP1137-20121227|4443_1 144 EACRVITEQYAKTFYFGTKFFSEEKRRAVWAVYAWCRRLDDIVD 187
                 56777778888888888899999999999999999999999877 PP

  == domain 2    score: 24.7 bits;  conditional E-value: 1.9e-09
   TIGR01559 111 tkrmGnGmadfvlkeekneetvedydkychyvaGlvGlGlsrlfvaakledeslaeseelsnslGlflqktniirdyledldenrefWPreiWsky 206
                  + m +Gm   ++++ +  et e+  +yc+ vaG vGl    ++ +a     + +e  e +  lG+ lq tn +rd  e    +r + P+e   ++
  MMETSP1137-20121227|4443_1 239 FEDMIKGMVMDLDQNRF--ETFEELYVYCYRVAGTVGLMTMPIMGVA--PGATFEEALEPALALGVALQLTNXLRDVGEXRVRQRIYLPQEDLRRF 330
                 56788888777766665..9***************986655555544..45566666677778***************************976666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (430 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        79  (0.0192589); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.32u 0.13s 00:00:00.45 Elapsed: 00:00:00.45
# Mc/sec: 1261.23
//
Query:       MMETSP1137-20121227|4444_1  [L=300]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (300 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       188  (0.0458313); expected 82.0 (0.02)
Passed bias filter:                      125  (0.0304729); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.17s 00:00:00.42 Elapsed: 00:00:00.47
# Mc/sec: 842.48
//
Query:       MMETSP1137-20121227|4445_1  [L=143]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.2e-11   39.3   0.0    1.2e-10   38.7   0.0    1.2  1  TIGR00536 hemK_fam: methyltransferase, HemK family
    9.3e-10   36.2   0.0    1.3e-09   35.7   0.0    1.2  1  TIGR03534 RF_mod_PrmC: protein-(glutamine-N5) methyltransferase, release factor-specific
    1.4e-06   26.4   0.0      2e-06   25.9   0.0    1.2  1  TIGR02469 CbiT: precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit
    7.3e-06   23.3   0.1    9.9e-06   22.9   0.1    1.2  1  TIGR03533 L3_gln_methyl: protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific
    2.3e-05   21.6   0.0    3.2e-05   21.2   0.0    1.1  1  TIGR01934 MenG_MenH_UbiE: ubiquinone/menaquinone biosynthesis methyltransferase
    0.00031   18.4   0.0    0.00041   18.0   0.0    1.1  1  TIGR02072 BioC: biotin biosynthesis protein BioC
    0.00057   17.1   0.0    0.00072   16.7   0.0    1.1  1  TIGR01983 UbiG: 3-demethylubiquinone-9 3-O-methyltransferase
    0.00085   16.9   0.0     0.0011   16.5   0.0    1.2  1  TIGR00138 gidB: 16S rRNA (guanine(527)-N(7))-methyltransferase GidB
     0.0015   15.8   0.0     0.0018   15.6   0.0    1.1  1  TIGR03704 PrmC_rel_meth: putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific
  ------ inclusion threshold ------
      0.027   11.7   0.0      0.032   11.5   0.0    1.1  1  TIGR02021 BchM-ChlM: magnesium protoporphyrin O-methyltransferase
      0.029   11.3   0.1      0.034   11.0   0.0    1.1  1  TIGR02716 C20_methyl_CrtF: C-20 methyltransferase BchU


Domain annotation for each model (and alignments):
>> TIGR00536  hemK_fam: methyltransferase, HemK family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.7   0.0   3.3e-13   1.2e-10     109     158 ..      80     128 ..      72     142 .. 0.88

  Alignments for each domain:
  == domain 1    score: 38.7 bits;  conditional E-value: 3.3e-13
   TIGR00536 109 lisqeplkhilDlgtGsGcIalalAleipnaeviavDistdalavaeeNa 158
                 l s+e   hi+D g G+G+Ial lA  +p+++v+ vD+s++ la+a++ a
  MMETSP1137-20121227|4445_1  80 LASKED-MHIVDFGGGTGAIALPLAGLLPEVTVTIVDVSEKSLAIAQRCA 128
                 556664.9**************************************9866 PP

>> TIGR03534  RF_mod_PrmC: protein-(glutamine-N5) methyltransferase, release factor-specific
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.7   0.0   3.5e-12   1.3e-09      84     132 ..      77     128 ..      69     138 .. 0.84

  Alignments for each domain:
  == domain 1    score: 35.7 bits;  conditional E-value: 3.5e-12
   TIGR03534  84 l...kkkeklkvlDlgtGsGaIalalakelpdakviavDiseeAlkvarkNa 132
                 +    +ke ++++D g G+GaIal la  lp+++v+ vD+se++l++a++ a
  MMETSP1137-20121227|4445_1  77 VmplASKEDMHIVDFGGGTGAIALPLAGLLPEVTVTIVDVSEKSLAIAQRCA 128
                 3333556669**************************************9866 PP

>> TIGR02469  CbiT: precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.9   0.0   5.4e-09     2e-06      14      61 ..      79     126 ..      71     139 .. 0.85

  Alignments for each domain:
  == domain 1    score: 25.9 bits;  conditional E-value: 5.4e-09
   TIGR02469  14 kLrlkkgdvllDiGaGtGsvtieaarlvpkgrvyaierneealeliee 61 
                  L+ k++++++D G+GtG +++ +a l+p++ v+ ++ +e++l   ++
  MMETSP1137-20121227|4445_1  79 PLASKEDMHIVDFGGGTGAIALPLAGLLPEVTVTIVDVSEKSLAIAQR 126
                 56677789********************************99987666 PP

>> TIGR03533  L3_gln_methyl: protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.9   0.1   2.7e-08   9.9e-06     118     163 ..      81     126 ..      67     138 .. 0.87

  Alignments for each domain:
  == domain 1    score: 22.9 bits;  conditional E-value: 2.7e-08
   TIGR03533 118 ekeevkrvldlctGsGClaiaaaeafpeaevdavDisedaLevaee 163
                 +++e  +++d+  G+G +a+ +a   pe +v +vD+se++L++a++
  MMETSP1137-20121227|4445_1  81 ASKEDMHIVDFGGGTGAIALPLAGLLPEVTVTIVDVSEKSLAIAQR 126
                 4667789*************************************97 PP

>> TIGR01934  MenG_MenH_UbiE: ubiquinone/menaquinone biosynthesis methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.0   8.7e-08   3.2e-05      32      81 ..      77     127 ..      72     139 .. 0.87

  Alignments for each domain:
  == domain 1    score: 21.2 bits;  conditional E-value: 8.7e-08
   TIGR01934  32 vkkieeekeekvlDvatGtGdlaielakkae.akvtgvDlseemLevakkk 81 
                 v+ ++++++ +++D  +GtG +a+ la   +   vt+vD+se+ L++a++ 
  MMETSP1137-20121227|4445_1  77 VMPLASKEDMHIVDFGGGTGAIALPLAGLLPeVTVTIVDVSEKSLAIAQRC 127
                 5556778999******************99999**************9975 PP

>> TIGR02072  BioC: biotin biosynthesis protein BioC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.0   1.1e-06   0.00041      32      76 ..      82     126 ..      63     134 .. 0.84

  Alignments for each domain:
  == domain 1    score: 18.0 bits;  conditional E-value: 1.1e-06
   TIGR02072  32 kfepakvLdiGcGtGiltrallkrfpqaelialDiseemleqakk 76 
                 + e+ ++ d+G GtG++   l+  +p+++++ +D+se+ l++a++
  MMETSP1137-20121227|4445_1  82 SKEDMHIVDFGGGTGAIALPLAGLLPEVTVTIVDVSEKSLAIAQR 126
                 456789***********************************9985 PP

>> TIGR01983  UbiG: 3-demethylubiquinone-9 3-O-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0   1.9e-06   0.00072      47      90 ..      82     127 ..      59     134 .. 0.77

  Alignments for each domain:
  == domain 1    score: 16.7 bits;  conditional E-value: 1.9e-06
   TIGR01983  47 kleglkvlDvGcGgGllseslarl..gaevtgiDlseelievAklh 90 
                 + e+++++D G G G ++ +la l  +++vt +D+se+ +++A+  
  MMETSP1137-20121227|4445_1  82 SKEDMHIVDFGGGTGAIALPLAGLlpEVTVTIVDVSEKSLAIAQRC 127
                 34589*****************9833456999**********9865 PP

>> TIGR00138  gidB: 16S rRNA (guanine(527)-N(7))-methyltransferase GidB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0     3e-06    0.0011      37      80 ..      77     120 ..      63     132 .. 0.81

  Alignments for each domain:
  == domain 1    score: 16.5 bits;  conditional E-value: 3e-06
   TIGR00138  37 llellkeskkkviDiGsGaGfPGiplallrpelkltLlesnkKk 80 
                 +++l ++ + +++D G G G  ++pla l pe+ +t+++ ++K 
  MMETSP1137-20121227|4445_1  77 VMPLASKEDMHIVDFGGGTGAIALPLAGLLPEVTVTIVDVSEKS 120
                 3344445459*****************************99985 PP

>> TIGR03704  PrmC_rel_meth: putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   4.7e-06    0.0018      69     130 ..      65     132 ..      42     140 .. 0.74

  Alignments for each domain:
  == domain 1    score: 15.6 bits;  conditional E-value: 4.7e-06
   TIGR03704  69 rteflvdeavalakersarl..vvvdlccGsGavgaalaaaldavelhaadidpa....avrcarrnl 130
                 r    +d+ +a++ + +++    +vd+  G+Ga+++ la  l +v ++ +d+       a rca r +
  MMETSP1137-20121227|4445_1  65 RKCDQIDSVLAIVMPLASKEdmHIVDFGGGTGAIALPLAGLLPEVTVTIVDVSEKslaiAQRCAIRAV 132
                 44445677777777665543339*****************************8751111456666655 PP

>> TIGR02021  BchM-ChlM: magnesium protoporphyrin O-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   8.6e-05     0.032      53      96 ..      83     128 ..      62     142 .. 0.79

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 8.6e-05
   TIGR02021  53 lkGkkvlDAGCGtGllsielAkr..GaivkavDiseklvelarkra 96 
                  + ++++D G GtG ++ +lA       v+ vD+sek +++a++ a
  MMETSP1137-20121227|4445_1  83 KEDMHIVDFGGGTGAIALPLAGLlpEVTVTIVDVSEKSLAIAQRCA 128
                 45679****************8522678899******999998755 PP

>> TIGR02716  C20_methyl_CrtF: C-20 methyltransferase BchU
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   9.2e-05     0.034     152     182 ..      87     117 ..      66     133 .. 0.83

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 9.2e-05
   TIGR02716 152 klidvgggigdiaaallkafpeldvtllnlp 182
                 +++d ggg g ia  l   +pe+ vt++++ 
  MMETSP1137-20121227|4445_1  87 HIVDFGGGTGAIALPLAGLLPEVTVTIVDVS 117
                 689************************9875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (143 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       119  (0.0290102); expected 82.0 (0.02)
Passed bias filter:                      116  (0.0282789); expected 82.0 (0.02)
Passed Vit filter:                        22  (0.00536324); expected 4.1 (0.001)
Passed Fwd filter:                        11  (0.00268162); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.19u 0.15s 00:00:00.34 Elapsed: 00:00:00.28
# Mc/sec: 674.09
//
Query:       MMETSP1137-20121227|4446_1  [L=420]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (420 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       165  (0.0402243); expected 82.0 (0.02)
Passed bias filter:                      100  (0.0243784); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.18s 00:00:00.49 Elapsed: 00:00:00.40
# Mc/sec: 1385.89
//
Query:       MMETSP1137-20121227|4447_1  [L=72]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        47  (0.0114578); expected 82.0 (0.02)
Passed bias filter:                       41  (0.00999512); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.12s 00:00:00.24 Elapsed: 00:00:00.24
# Mc/sec: 395.97
//
Query:       MMETSP1137-20121227|4448_1  [L=284]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.2e-48  163.6   0.0    1.6e-48  163.3   0.0    1.1  1  TIGR00080 pimt: protein-L-isoaspartate O-methyltransferase
    3.1e-09   35.0   0.0      6e-09   34.1   0.0    1.5  1  TIGR02469 CbiT: precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit
    3.4e-08   31.1   0.0    6.4e-07   26.9   0.0    2.1  2  TIGR03534 RF_mod_PrmC: protein-(glutamine-N5) methyltransferase, release factor-specific
    1.7e-06   25.6   0.0    2.3e-06   25.1   0.0    1.1  1  TIGR00406 prmA: ribosomal protein L11 methyltransferase
    2.7e-05   21.7   0.0    3.6e-05   21.2   0.0    1.2  1  TIGR02752 MenG_heptapren: 2-heptaprenyl-1,4-naphthoquinone methyltransferase
    0.00012   19.4   0.0    0.00017   18.9   0.0    1.1  1  TIGR02021 BchM-ChlM: magnesium protoporphyrin O-methyltransferase
    0.00014   19.1   0.0    0.00023   18.3   0.0    1.3  1  TIGR01983 UbiG: 3-demethylubiquinone-9 3-O-methyltransferase
     0.0013   15.9   0.0     0.0018   15.4   0.0    1.1  1  TIGR01934 MenG_MenH_UbiE: ubiquinone/menaquinone biosynthesis methyltransferase
     0.0014   16.3   0.0     0.0029   15.3   0.0    1.6  1  TIGR02072 BioC: biotin biosynthesis protein BioC
     0.0028   14.6   0.0     0.0078   13.1   0.0    1.6  2  TIGR00536 hemK_fam: methyltransferase, HemK family
  ------ inclusion threshold ------
      0.026   12.8   0.0      0.042   12.2   0.0    1.3  1  TIGR01444 fkbM_fam: methyltransferase, FkbM family
      0.037   10.7   0.0      0.051   10.2   0.0    1.1  1  TIGR00479 rumA: 23S rRNA (uracil-5-)-methyltransferase RumA
      0.039   11.1   0.0        0.1    9.7   0.0    1.6  2  TIGR03533 L3_gln_methyl: protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific
      0.039   11.3   0.0      0.055   10.8   0.0    1.2  1  TIGR02081 metW: methionine biosynthesis protein MetW


Domain annotation for each model (and alignments):
>> TIGR00080  pimt: protein-L-isoaspartate O-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  163.3   0.0   5.3e-51   1.6e-48      18     214 ..       5     209 ..       2     211 .. 0.96

  Alignments for each domain:
  == domain 1    score: 163.3 bits;  conditional E-value: 5.3e-51
   TIGR00080  18 rvikskrvldalksveReeFvpealkeaayedaaleigygqtisaphmvakmlelLe..lkagakvLeiGtGsGYqaavlaelvgrdglvvsierieeLvekaerrlkk......LeldnvivkegDGrkGfeekaPydailvtaaskeiPkaLidqLeeGGklvlPveeveeqvlkrvekrn..geiiikvvekvlfvPlvkkeea 214
                 ++i+++r++  l+  +R+++  +    + y+d +++ig g tisaphm+a++le L+  l +g k+L++G+GsGY+++ +a++vg  g  ++i++++eLve ++ ++++      L  +  ++ ++DG  G  + aP+d i+v+aa+ e+P aL +qL+ GG l+lPv+ +++q ++r+++    +++  + +  v++vPl++ e +
  MMETSP1137-20121227|4448_1   5 GLIADPRIRTVLERQDRGNYCKD--LSTCYNDSPQQIGWGITISAPHMHAQALEQLKdhLRPGCKALDVGSGSGYLTVAMAQMVGDAGQAIGIDHVPELVEWSRENVRRdgkeemLASGQLQLFTADGFGGAPHAAPFDCIHVGAAPLEVPPALKQQLKPGGVLLLPVGPAHDQAFVRITRSSdgNDFSEERLFGVRYVPLTSLEAQ 209
                 7899*****************99..6899***************************999*************************************************99999*9*****************************************************************98654789999***********98875 PP

>> TIGR02469  CbiT: precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.1   0.0   2.1e-11     6e-09       5      69 ..      48     115 ..      44     170 .. 0.74

  Alignments for each domain:
  == domain 1    score: 34.1 bits;  conditional E-value: 2.1e-11
   TIGR02469   5 eevRaltLakLr..lkkgdvllDiGaGtGsvtieaarlvpk.grvyaierneealelieeNlrrfgvs 69 
                 + + a++L++L+  l++g ++lD+G+G+G +t+ +a++v+  g+ ++i+  +e +e  +eN+rr g +
  MMETSP1137-20121227|4448_1  48 PHMHAQALEQLKdhLRPGCKALDVGSGSGYLTVAMAQMVGDaGQAIGIDHVPELVEWSRENVRRDGKE 115
                 5678899999954499999*******************************************997433 PP

>> TIGR03534  RF_mod_PrmC: protein-(glutamine-N5) methyltransferase, release factor-specific
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.9   0.0   2.2e-09   6.4e-07      79     148 ..      53     131 ..      49     145 .. 0.76
   2 ?    1.8   0.0     0.098        29     204     235 ..     155     186 ..     147     194 .. 0.85

  Alignments for each domain:
  == domain 1    score: 26.9 bits;  conditional E-value: 2.2e-09
   TIGR03534  79 aaleelkkke..klkvlDlgtGsGaIalalakelpda.kviavDiseeAlkvarkNakrlglke......veflksdll 148
                 +ale+lk++    +k lD+g+GsG +++a+a+++ da + i++D  +e ++++r+N++r g +e      ++++ +d +
  MMETSP1137-20121227|4448_1  53 QALEQLKDHLrpGCKALDVGSGSGYLTVAMAQMVGDAgQAIGIDHVPELVEWSRENVRRDGKEEmlasgqLQLFTADGF 131
                 677777665544789*******************776499*******************99886544444455555554 PP

  == domain 2    score: 1.8 bits;  conditional E-value: 0.098
   TIGR03534 204 eaakllkeggllllEigekqaeavaelleaag 235
                  +++ lk+gg+lll +g  + +a+ ++ +++ 
  MMETSP1137-20121227|4448_1 155 ALKQQLKPGGVLLLPVGPAHDQAFVRITRSSD 186
                 56889*******************99998854 PP

>> TIGR00406  prmA: ribosomal protein L11 methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.1   0.0   7.9e-09   2.3e-06     150     206 ..      55     113 ..      47     129 .. 0.85

  Alignments for each domain:
  == domain 1    score: 25.1 bits;  conditional E-value: 7.9e-09
   TIGR00406 150 lellesldlkdkkviDvGcGSGiLsiaalkl..gaakvvavDiDplavesarkNlelNq 206
                 le l++  +++ k++DvG+GSG L++a++++  +a +++++D  p  ve +r+N+++ +
  MMETSP1137-20121227|4448_1  55 LEQLKDHLRPGCKALDVGSGSGYLTVAMAQMvgDAGQAIGIDHVPELVEWSRENVRRDG 113
                 788888889999*************997655336889*****************99876 PP

>> TIGR02752  MenG_heptapren: 2-heptaprenyl-1,4-naphthoquinone methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.0   1.2e-07   3.6e-05      43      97 ..      62     116 ..      46     164 .. 0.85

  Alignments for each domain:
  == domain 1    score: 21.2 bits;  conditional E-value: 1.2e-07
   TIGR02752  43 vqkgkkaldvccgtadwaialaeavgkegevkgldfsenmlsvgkekvkdaklen 97 
                 ++ g kaldv  g++  ++a+a+ vg+ g+ +g+d   ++++ ++e v+    e+
  MMETSP1137-20121227|4448_1  62 LRPGCKALDVGSGSGYLTVAMAQMVGDAGQAIGIDHVPELVEWSRENVRRDGKEE 116
                 67899***************************************99998766554 PP

>> TIGR02021  BchM-ChlM: magnesium protoporphyrin O-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.0   5.8e-07   0.00017      39     101 ..      49     114 ..      32     129 .. 0.82

  Alignments for each domain:
  == domain 1    score: 18.9 bits;  conditional E-value: 5.8e-07
   TIGR02021  39 amrekllewlpkdslkGkkvlDAGCGtGllsielAkr.Ga..ivkavDiseklvelarkraekede 101
                 +m++++le l++ +  G k lD G G+G l++ +A+  G   +  ++D  ++lve +r++ +   +
  MMETSP1137-20121227|4448_1  49 HMHAQALEQLKDHLRPGCKALDVGSGSGYLTVAMAQMvGDagQAIGIDHVPELVEWSRENVRRDGK 114
                 799********99999*******************85344115667788899**999998877665 PP

>> TIGR01983  UbiG: 3-demethylubiquinone-9 3-O-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.0     8e-07   0.00023      49      94 ..      64     112 ..      35     126 .. 0.79

  Alignments for each domain:
  == domain 1    score: 18.3 bits;  conditional E-value: 8e-07
   TIGR01983  49 eglkvlDvGcGgGllseslarlgae...vtgiDlseelievAklhakkd 94 
                  g k lDvG+G+G l+ ++a++  +    +giD + el+e  ++  ++d
  MMETSP1137-20121227|4448_1  64 PGCKALDVGSGSGYLTVAMAQMVGDagqAIGIDHVPELVEWSRENVRRD 112
                 3899****************9866555699*********9998876665 PP

>> TIGR01934  MenG_MenH_UbiE: ubiquinone/menaquinone biosynthesis methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   6.2e-06    0.0018      39      85 ..      64     112 ..      32     128 .. 0.85

  Alignments for each domain:
  == domain 1    score: 15.4 bits;  conditional E-value: 6.2e-06
   TIGR01934  39 keekvlDvatGtGdlaielakkae..akvtgvDlseemLevakkkakek 85 
                  + k lDv +G+G l++++a++++   + +g+D  +e++e +++ ++  
  MMETSP1137-20121227|4448_1  64 PGCKALDVGSGSGYLTVAMAQMVGdaGQAIGIDHVPELVEWSRENVRRD 112
                 67899********************99**************99988766 PP

>> TIGR02072  BioC: biotin biosynthesis protein BioC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   9.9e-06    0.0029      22      80 ..      53     114 ..      48     216 .. 0.77

  Alignments for each domain:
  == domain 1    score: 15.3 bits;  conditional E-value: 9.9e-06
   TIGR02072  22 kLlellkekrkfepakvLdiGcGtGiltrallkrfpqa.elialDiseemleqakkkls...n 80 
                 + le lk++  +   k+Ld+G+G+G+lt a+++++ +a + i +D ++e  e  +++++   +
  MMETSP1137-20121227|4448_1  53 QALEQLKDHL-RPGCKALDVGSGSGYLTVAMAQMVGDAgQAIGIDHVPELVEWSRENVRrdgK 114
                 5566677765.44579***************99986651699999999999998888876651 PP

>> TIGR00536  hemK_fam: methyltransferase, HemK family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.1   0.0   2.7e-05    0.0078     105     175 ..      54     126 ..      45     129 .. 0.81
   2 ?   -1.8   0.0      0.97   2.8e+02     231     257 ..     157     183 ..     155     195 .. 0.79

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 2.7e-05
   TIGR00536 105 aleslisq.eplkhilDlgtGsGcIalalAleipna.eviavDistdalavaeeNaeklkleerveliqsnll 175
                 ale+l ++  p ++ lD+g GsG   +a+A  + +a + i++D  ++ ++  +eN+++ + ee     q +l+
  MMETSP1137-20121227|4448_1  54 ALEQLKDHlRPGCKALDVGSGSGYLTVAMAQMVGDAgQAIGIDHVPELVEWSRENVRRDGKEEMLASGQLQLF 126
                 55666554133499******************99875799****************99988876666666665 PP

  == domain 2    score: -1.8 bits;  conditional E-value: 0.97
   TIGR00536 231 keylksngvlllEignsqqkelkellr 257
                 k+ lk++gvlll +g+   ++ +++ r
  MMETSP1137-20121227|4448_1 157 KQQLKPGGVLLLPVGPAHDQAFVRITR 183
                 6789***********999999888665 PP

>> TIGR01444  fkbM_fam: methyltransferase, FkbM family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   0.00014     0.042       3      48 ..      69     115 ..      67     130 .. 0.91

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 0.00014
   TIGR01444   3 iDiGAniGdvslvfaravae.grviafEPlpdllekleenvklnnlk 48 
                 +D+G+  G +++ +a++v+  g+ i ++  p+l+e  +env+  + +
  MMETSP1137-20121227|4448_1  69 LDVGSGSGYLTVAMAQMVGDaGQAIGIDHVPELVEWSRENVRRDGKE 115
                 8***************************************9988765 PP

>> TIGR00479  rumA: 23S rRNA (uracil-5-)-methyltransferase RumA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   0.00017     0.051     291     340 ..      62     114 ..      45     121 .. 0.78

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 0.00017
   TIGR00479 291 lqgeekvvDaycGvGtftlplAkqa...ksvvgvevvkesvekakrnAelngi 340
                 l +  k +D+ +G G +t+ +A+ +    +++g++ v+e+ve ++ n +++g 
  MMETSP1137-20121227|4448_1  62 LRPGCKALDVGSGSGYLTVAMAQMVgdaGQAIGIDHVPELVEWSRENVRRDGK 114
                 66777889**************975222689*****************99986 PP

>> TIGR03533  L3_gln_methyl: protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.0   0.00035       0.1     123     183 ..      66     127 ..      49     143 .. 0.81
   2 ?   -1.9   0.0       1.2   3.5e+02     238     256 ..     157     175 ..     154     181 .. 0.83

  Alignments for each domain:
  == domain 1    score: 9.7 bits;  conditional E-value: 0.00035
   TIGR03533 123 krvldlctGsGClaiaaaeafpea.evdavDisedaLevaeenieeyeledrveliqsdlfe 183
                  ++ld+ +GsG l++a+a++  +a +   +D   + +e ++en+++ + e+ ++  q +lf+
  MMETSP1137-20121227|4448_1  66 CKALDVGSGSGYLTVAMAQMVGDAgQAIGIDHVPELVEWSRENVRRDGKEEMLASGQLQLFT 127
                 579****************998874677899999999******9999888877776666665 PP

  == domain 2    score: -1.9 bits;  conditional E-value: 1.2
   TIGR03533 238 aeyLeeeGvLvvEvGnske 256
                 +++L+++GvL++ vG +++
  MMETSP1137-20121227|4448_1 157 KQQLKPGGVLLLPVGPAHD 175
                 6899**********98654 PP

>> TIGR02081  metW: methionine biosynthesis protein MetW
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00019     0.055       4      45 ..      55      96 ..      52     109 .. 0.84

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 0.00019
   TIGR02081  4 leailelipagsrvLDlGcGdGeLLallrdekqvegaGleid 45
                le++ + +++g + LD+G+G+G L  ++++     g+ + id
  MMETSP1137-20121227|4448_1 55 LEQLKDHLRPGCKALDVGSGSGYLTVAMAQMVGDAGQAIGID 96
                6888999*****************999988777777766665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (284 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        73  (0.0177962); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                        21  (0.00511945); expected 4.1 (0.001)
Passed Fwd filter:                        14  (0.00341297); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.27u 0.16s 00:00:00.43 Elapsed: 00:00:00.36
# Mc/sec: 1041.25
//
Query:       MMETSP1137-20121227|4449_1  [L=320]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.7e-12   42.9   0.0    9.3e-12   42.4   0.0    1.2  1  TIGR00408 proS_fam_I: proline--tRNA ligase
  ------ inclusion threshold ------
      0.049    9.9   6.0      0.071    9.4   4.2    1.2  1  TIGR01642 U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor


Domain annotation for each model (and alignments):
>> TIGR00408  proS_fam_I: proline--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.4   0.0   4.5e-15   9.3e-12     283     359 ..      83     162 ..      78     198 .. 0.90

  Alignments for each domain:
  == domain 1    score: 42.4 bits;  conditional E-value: 4.5e-15
   TIGR00408 283 iqvvvipiifkkk..enkkvlelarkveekLkkleiRvelderdn.rpGkkfskaElkGiPlrlevgpkdieknavvvlr 359
                  +vvv+pi +k+   ++ +vl +++ +e+ L + + Rveld+  + +pG+kf ++E +G+ lr+evgp+++e +  ++ r
  MMETSP1137-20121227|4449_1  83 PEVVVVPIFWKGVaeQRGRVLSACKDIEQLLLRSGRRVELDSGTKyTPGQKFAHWEHRGVKLRVEVGPREAERGCCTLAR 162
                 589****888876668889***********************9999**************************99988766 PP

>> TIGR01642  U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   4.2   3.5e-05     0.071      44     107 ..      15      77 ..       9     109 .. 0.78

  Alignments for each domain:
  == domain 1    score: 9.4 bits;  conditional E-value: 3.5e-05
   TIGR01642  44 rsrrkdsRdRdrrrydsrsissleedsrrrSRdrirrrsrsssseskerrrsrkrsssnekkkd 107
                  +r++ +R+R+r   + r     e ++ +rSR++ +rr+ + +s++ +r+r +k+   +++k +
  MMETSP1137-20121227|4449_1  15 AARKEKQRQRQREALEARA-AGAEFKKSKRSRKPLERRKFEARSKVSNRERRLKQKAAKQQKAK 77 
                 5677778888887777777.6677778899********99999999999888887777777633 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (320 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       219  (0.0533886); expected 82.0 (0.02)
Passed bias filter:                      115  (0.0280351); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.31u 0.17s 00:00:00.48 Elapsed: 00:00:00.56
# Mc/sec: 740.99
//
Query:       MMETSP1137-20121227|4450_1  [L=217]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (217 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        59  (0.0143832); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.15s 00:00:00.35 Elapsed: 00:00:00.27
# Mc/sec: 1060.80
//
Query:       MMETSP1137-20121227|4451_1  [L=213]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (213 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        83  (0.020234); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.15s 00:00:00.36 Elapsed: 00:00:00.28
# Mc/sec: 969.44
//
Query:       MMETSP1137-20121227|4453_1  [L=356]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (356 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       114  (0.0277913); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.17s 00:00:00.47 Elapsed: 00:00:00.49
# Mc/sec: 958.94
//
Query:       MMETSP1137-20121227|4454_1  [L=39]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (39 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        51  (0.012433); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.17s 00:00:00.27 Elapsed: 00:00:00.26
# Mc/sec: 197.98
//
Query:       MMETSP1137-20121227|4455_1  [L=93]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (93 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        50  (0.0121892); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.68
# Mc/sec: 180.51
//
Query:       MMETSP1137-20121227|4456_1  [L=229]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (229 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        69  (0.0168211); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.15s 00:00:00.36 Elapsed: 00:00:00.77
# Mc/sec: 392.54
//
Query:       MMETSP1137-20121227|4457_1  [L=276]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (276 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        87  (0.0212092); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.16s 00:00:00.40 Elapsed: 00:00:00.82
# Mc/sec: 444.26
//
Query:       MMETSP1137-20121227|4458_1  [L=475]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.1e-19   66.2   0.0    4.6e-19   65.6   0.0    1.1  1  TIGR03903 TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
    1.9e-09   35.1   0.0    2.8e-09   34.6   0.0    1.2  1  TIGR03724 arch_bud32: Kae1-associated kinase Bud32


Domain annotation for each model (and alignments):
>> TIGR03903  TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.6   0.0   2.2e-22   4.6e-19       4     202 ..      44     235 ..      42     244 .. 0.86

  Alignments for each domain:
  == domain 1    score: 65.6 bits;  conditional E-value: 2.2e-22
   TIGR03903   4 hkvaikllRedaaeeerlvaRFrReialCarLshPnivaLlDsGeaedgllFavF.eyveGrtlrevLaadGaLpaaetgrLmlqvLDalaaahdaGvvhRDLkPqnimvsaadveshakvLDFGigaLlpgvedadeatltrttevlGsPaYaaPeqLRgep.vtaksDlYaWGLivleCLtGkrvvqGasvaevlykqL 202
                 + va k+++  ++  e   +  rRe+ + ++    ++ a+  s    d+  F +F e+  G  l  ++a+ GaLp ae      q++ ++ + h+ G+vhRDLk +n+m++ ++   h +++DFG++   +  +d  + +    +   Gs  Y+aPe L  +     k+Dl++ G+i++  L G   ++ as+ +  +++L
  MMETSP1137-20121227|4458_1  44 KSVAAKIVKLTHSVSE---KQLRREMVIQQHAACEHVAAVYGSASRWDQ--FVIFlELCSGGELCSLVATRGALPEAEVHGYFKQIIAGVVHMHSVGIVHRDLKLENVMLTDKG---HVRIIDFGLAHQYSMGDD-GTYKERPLSRCCGSEVYSAPEVLDPDVgYSYKADLWSCGVILFALLYGCFPLELASLSDWRFRKL 235
                 5688888887766555...55799*999999999999999888777774..44444******************************************************9766...789******998887777.555555667899***********987625789*****************9999999999999988 PP

>> TIGR03724  arch_bud32: Kae1-associated kinase Bud32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.6   0.0   1.4e-12   2.8e-09      35     140 ..      53     166 ..      45     202 .. 0.84

  Alignments for each domain:
  == domain 1    score: 34.6 bits;  conditional E-value: 1.4e-12
   TIGR03724  35 lDeklrkeRtrkEarllseakkagvntPvvydvdpeekkivmeyiegkklkdlleekel.......ellkevGelvgklHkagivhgDlttsNiivk.ddklyliDfGLgkksk 140
                 l +++ ++  r+E+ + ++a+ + v + +      +++ i +e  +g +l  l+ ++          ++k++   v ++H+ givh Dl  +N++++ ++++ +iDfGL+++ +
  MMETSP1137-20121227|4458_1  53 LTHSVSEKQLRREMVIQQHAACEHVAAVYGSASRWDQFVIFLELCSGGELCSLVATRGAlpeaevhGYFKQIIAGVVHMHSVGIVHRDLKLENVMLTdKGHVRIIDFGLAHQYS 166
                 66667777778888888888888777777777788899999999999999999998777888888899***************************96367899*******9754 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (475 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        87  (0.0212092); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.36u 0.15s 00:00:00.51 Elapsed: 00:00:00.54
# Mc/sec: 1161.02
//
Query:       MMETSP1137-20121227|4459_1  [L=777]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0011   16.3   0.0     0.0036   14.7   0.0    1.8  1  TIGR00633 xth: exodeoxyribonuclease III (xth)
     0.0027   14.8   9.1     0.0043   14.2   6.3    1.2  1  TIGR02794 tolA_full: protein TolA
  ------ inclusion threshold ------
      0.028   11.9   0.0      0.081   10.3   0.0    1.8  1  TIGR00195 exoDNase_III: exodeoxyribonuclease III


Domain annotation for each model (and alignments):
>> TIGR00633  xth: exodeoxyribonuclease III (xth)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0   2.7e-06    0.0036      19      94 ..     340     448 ..     334     516 .. 0.61

  Alignments for each domain:
  == domain 1    score: 14.7 bits;  conditional E-value: 2.7e-06
   TIGR00633  19 flellkeekpDvlclQEtKvae.eqlpkelleeegYevafssakkk......gysGvallskeepesvr.vgigaeeedeegr.........................v 94 
                 +l+ l ++++D++clQE+ + + e++ + +l++ +Y   +++++++      +  G a+l+++   s+   g+   e+++  r                         +
  MMETSP1137-20121227|4459_1 340 ILSELINYRADIMCLQEVQADHfENFLEPELAKYNYAGLHKCKTREfmgrygKMDGCAILYRRDKFSIVpGGVHDVEFNTIARlrhgsdkrllnrllkdnvaqvllleM 448
                 567778899***********99999999999******999999988997666678999999966555540455554444433333444444666655555555555542 PP

>> TIGR02794  tolA_full: protein TolA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   6.3   3.1e-06    0.0043     194     233 ..      60      96 ..      54     124 .. 0.70

  Alignments for each domain:
  == domain 1    score: 14.2 bits;  conditional E-value: 3.1e-06
   TIGR02794 194 kaeaeaKakaeeakaKaeaeAkaKAeaeAkaKaeaeakak 233
                 + e+e+Kak+    aKaea+A+aKA+a+  aKa ae k k
  MMETSP1137-20121227|4459_1  60 EDEIEEKAKRV---AKAEAKAEAKAQADGGAKALAETKDK 96 
                 67999***999...77777777777777777777655533 PP

>> TIGR00195  exoDNase_III: exodeoxyribonuclease III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   5.9e-05     0.081      15      62 ..     337     389 ..     334     514 .. 0.78

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 5.9e-05
   TIGR00195  15 lkklleflkeekpDvlclqEtkvad.eqfpkelvekegYhvffsga....kgy 62 
                  +++l+ l ++++D++clqE+++ + e+f + + +k +Y   ++++     g+
  MMETSP1137-20121227|4459_1 337 RRNILSELINYRADIMCLQEVQADHfENFLEPELAKYNYAGLHKCKtrefMGR 389
                 56778888899**********99764777777889999998888876555343 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (777 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       140  (0.0341297); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.53u 0.16s 00:00:00.69 Elapsed: 00:00:00.53
# Mc/sec: 1935.01
//
Query:       MMETSP1137-20121227|4460_1  [L=253]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.9e-57  191.5   1.3    1.1e-56  189.6   0.9    1.7  1  TIGR00453 ispD: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
      0.008   14.1   1.9      0.022   12.6   1.3    1.8  1  TIGR02665 molyb_mobA: molybdopterin-guanine dinucleotide biosynthesis protein A


Domain annotation for each model (and alignments):
>> TIGR00453  ispD: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  189.6   0.9   5.1e-60   1.1e-56       2     219 .]      43     249 ..      42     249 .. 0.92

  Alignments for each domain:
  == domain 1    score: 189.6 bits;  conditional E-value: 5.1e-60
   TIGR00453   2 avilAAGrgeRlgskvpKqylelagkplllhaleallaseavkevvvvvseedeellqkalkakaevklvkGGetRqeSVlngLkaleadaeiVlvhDaARplvkkelldrllealekaakaailalpvaDTlkrveadgkvvetvdReklwavqTPQlfrtelLlkalarakaegleitDdaslveklGlkvklvegdeenlKiTtpeDLalaeall 219
                 +++lA+G+g+R+g+++pKq+lel g       +++l++      vvv ++e ++  + + + +++ v ++++G++Rq+SV ngL+ ++ +++ V vhDaARplv+ ++++++l+  ++ ++aa+la+p++ T+k++e   +v++t++R++lw +qTPQ++r +lL ++++r ++e+le+tDd s+ve+lG +vkl  g+++nlK+TtpeD+ +ae++l
  MMETSP1137-20121227|4460_1  43 MLVLAGGSGKRMGAAKPKQFLELMGLQ-----VKQLHT-----LVVVLAEEYRTLDFLAPILKDERVRFANPGAERQDSVENGLAEVPDECTLVAVHDAARPLVSLDAVHACLADGAE-HGAAVLAVPMKATVKESEDGKFVTRTLERSRLWEIQTPQVIRPQLLRDGFRRVHEENLEVTDDVSIVEQLGEPVKLTLGEYTNLKLTTPEDMIVAEQIL 249
                 689*******************99853.....344444.....455556666666677778888999***************************************************.99**************99888**************************************************************************9986 PP

>> TIGR02665  molyb_mobA: molybdopterin-guanine dinucleotide biosynthesis protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.6   1.3   1.1e-05     0.022       2      27 ..      42      66 ..      41     167 .. 0.79

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 1.1e-05
   TIGR02665  2 sgviLAGGrarRMggedKglvelrgk 27
                ++++LAGG ++RMg   K  + l+ +
  MMETSP1137-20121227|4460_1 42 AMLVLAGGSGKRMGA-AKPKQFLELM 66
                679***********8.4444444433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (253 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       112  (0.0273038); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.25u 0.17s 00:00:00.42 Elapsed: 00:00:00.37
# Mc/sec: 902.52
//
Query:       MMETSP1137-20121227|4461_1  [L=310]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.2e-26   88.7   0.0      1e-25   88.3   0.0    1.1  1  TIGR00231 small_GTP: small GTP-binding protein domain
    3.8e-05   20.5   0.0      5e-05   20.1   0.0    1.1  1  TIGR03918 GTP_HydF: [FeFe] hydrogenase H-cluster maturation GTPase HydF
    0.00039   17.4   0.3     0.0031   14.4   0.2    1.9  1  TIGR03594 GTPase_EngA: ribosome-associated GTPase EngA
    0.00041   17.4   0.0    0.00066   16.7   0.0    1.3  1  TIGR00450 mnmE_trmE_thdF: tRNA modification GTPase TrmE
     0.0033   15.5   0.1      0.047   11.8   0.0    2.1  2  TIGR02528 EutP: ethanolamine utilization protein, EutP
     0.0072   13.3   0.0      0.036   11.1   0.0    1.9  2  TIGR03597 GTPase_YqeH: ribosome biogenesis GTPase YqeH
  ------ inclusion threshold ------
      0.014   12.7   0.0      0.023   12.0   0.0    1.3  1  TIGR00157 TIGR00157: ribosome small subunit-dependent GTPase A
      0.025   12.1   0.0      0.081   10.4   0.0    1.7  2  TIGR03598 GTPase_YsxC: ribosome biogenesis GTP-binding protein YsxC


Domain annotation for each model (and alignments):
>> TIGR00231  small_GTP: small GTP-binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.3   0.0     2e-28     1e-25       5     162 ..      10     169 ..       7     171 .. 0.87

  Alignments for each domain:
  == domain 1    score: 88.3 bits;  conditional E-value: 2e-28
   TIGR00231   5 kivivGhvdvGKstLlnsllknkisiteskpgvtrdyvteqieedGktykvnllDTaGqedfdairrlyvreverslevvdivilvldveeglekqtkei.ihe..akkkgvpiilvvnKiDlkd.dlktkvkslfaklnaep.iielsaetgknidklfklv 162
                 k+ i+G+++vGK++L+n++  +k +  ++k++++ d+ t+ i++d   ++++++DTaGqe+f+ +  + +r +++ + ++d++++ +++e+   +++ e+ i++  ++ +++p+++ +nK+Dl +  + +k +      ++e+  +e+sa++  n++++f+ +
  MMETSP1137-20121227|4461_1  10 KVIILGDSGVGKTSLMNQYVNKK-FSNQYKATIGADFLTKEIMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADSCVLCYDVNSA-KTFENLD-SWRDEFlIQAgpRDPDNFPFVVLGNKVDLDSrVVTQKRALAWCTAKGEIpHFETSAKEAINVEQAFQVI 169
                 99*********************.*************************************************************.9999999.7766652433226779***************5444444444444455555****************987 PP

>> TIGR03918  GTP_HydF: [FeFe] hydrogenase H-cluster maturation GTPase HydF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.0   9.8e-08     5e-05       7     175 ..       8     182 ..       2     193 .. 0.76

  Alignments for each domain:
  == domain 1    score: 20.1 bits;  conditional E-value: 9.8e-08
   TIGR03918   7 rlhialfGrrNaGKSsliNaltgqdvaivsdvpGt.TtDpvekamEllp.lGpvvliDTaGldDegeLGelRvektrevlektdlallvvdaeaeleeleeellee..lkekkipvivvlnkidlkeeeke....keklekkkeeevvlvsakekegieelkealiellpeea.eekt 175
                  l++ ++G   +GK sl+N+ ++++ +   +++ t  +D  +k++ + + l  + + DTaG +   +LG   ++ + + +   d+    + ++ + +  +e l+++   +  + p++v+ nk+dl ++  +     +  ++k e+++  +sake  ++e+  + +++++ ++  ee+ 
  MMETSP1137-20121227|4461_1   8 LLKVIILGDSGVGKTSLMNQYVNKKFSN--QYKATiGADFLTKEIMVDDrLVTMQIWDTAGQERFQSLGVAFYRGADSCVLCYDVNSAKTFENLD-SWRDEFLIQAgpRDPDNFPFVVLGNKVDLDSRVVTqkraLAWCTAKGEIPHFETSAKEAINVEQAFQVIARNALKQEtEEDI 182
                 57899********************984..4454425899999998865389999***************9999999999999998777766643.33344444441134579***********987654422335566778889999******************999666624444 PP

>> TIGR03594  GTPase_EngA: ribosome-associated GTPase EngA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.2     6e-06    0.0031     174     239 ..       7      73 ..       2     200 .. 0.66

  Alignments for each domain:
  == domain 1    score: 14.4 bits;  conditional E-value: 6e-06
   TIGR03594 174 epikiaiiGrpNvGKStLvNallgeervivsdiaGtTrDsidievevkgkk..ylliDTAGirrkkkv 239
                   +k+ i+G   vGK +L+N+ ++++ +  +  a +  D  + e+ v+++   +++ DTAG  r +++
  MMETSP1137-20121227|4461_1   7 VLLKVIILGDSGVGKTSLMNQYVNKK-FSNQYKATIGADFLTKEIMVDDRLvtMQIWDTAGQERFQSL 73 
                 46899****************99876.55677899999*******999986336789****8876654 PP

>> TIGR00450  mnmE_trmE_thdF: tRNA modification GTPase TrmE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0   1.3e-06   0.00066     210     340 ..       9     142 ..       2     207 .. 0.61

  Alignments for each domain:
  == domain 1    score: 16.7 bits;  conditional E-value: 1.3e-06
   TIGR00450 210 lklaivGktNvGKSSLlNallkkdraiVsdikGtt.RDvvEedleleGilv..kllDtAGiReaadkvEklGiekslkaikeadlvlyvlDaskplt.......kddeliitlkk..kkkdlllvlNKiDLaelei.lkselkl 340
                 lk+ i+G+  vGK SL+N +++k      ++k t   D + +++ ++  lv  ++ DtAG    ++    lG+   +     ad  ++  D+++ +t       +d++li+   +   + +++++ NK DL + ++ +k+ l  
  MMETSP1137-20121227|4461_1   9 LKVIILGDSGVGKTSLMNQYVNKK--FSNQYKATIgADFLTKEIMVDDRLVtmQIWDTAG----QERFQSLGVAFYR----GADSCVLCYDVNSAKTfenldswRDEFLIQAGPRdpDNFPFVVLGNKVDLDSRVVtQKRALAW 142
                 799****************99865..66899999537*********997653389*****....6677778986433....334444444444433321222225667777765511466788888999999554404443332 PP

>> TIGR02528  EutP: ethanolamine utilization protein, EutP
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.8   0.0   9.1e-05     0.047       2      40 ..      10      50 ..       9      65 .. 0.82
   2 ?    1.4   0.0      0.14        74      94     139 ..     123     168 ..     103     171 .. 0.84

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 9.1e-05
   TIGR02528  2 rimliGsvgcGkttLtqaLkgeei..kykktqaveykdkai 40
                +++++G +g Gkt+L+++  +++   +yk t   ++  k i
  MMETSP1137-20121227|4461_1 10 KVIILGDSGVGKTSLMNQYVNKKFsnQYKATIGADFLTKEI 50
                799***************99987633688887777776655 PP

  == domain 2    score: 1.4 bits;  conditional E-value: 0.14
   TIGR02528  94 lvtkidlaeadkeierakelLeeagaekiFeissvdekgleelvdy 139
                 l  k+dl    +  +ra  + +  g+ + Fe+s+++   +e+ ++ 
  MMETSP1137-20121227|4461_1 123 LGNKVDLDSRVVTQKRALAWCTAKGEIPHFETSAKEAINVEQAFQV 168
                 557999999888889999999999999*********9999997765 PP

>> TIGR03597  GTPase_YqeH: ribosome biogenesis GTPase YqeH
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.1   0.0   6.9e-05     0.036     156     188 ..       9      41 ..       1      96 [. 0.73
   2 ?    0.1   0.0      0.15        78      91     119 ..     117     145 ..     106     179 .. 0.73

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 6.9e-05
   TIGR03597 156 kdvyvvGvtNVGKSsliNkllklnkgkkkvitt 188
                  +v+++G + VGK sl+N+ ++++  ++   t+
  MMETSP1137-20121227|4461_1   9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATI 41 
                 589****************99877665554554 PP

  == domain 2    score: 0.1 bits;  conditional E-value: 0.15
   TIGR03597  91 enkvllvvNKidllpksvklekikewlkk 119
                 + ++++++NK+dl  + v++++   w + 
  MMETSP1137-20121227|4461_1 117 NFPFVVLGNKVDLDSRVVTQKRALAWCTA 145
                 6789999*****99999988888888765 PP

>> TIGR00157  TIGR00157: ribosome small subunit-dependent GTPase A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   4.5e-05     0.023     126     144 ..      12      30 ..       6      68 .. 0.86

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 4.5e-05
   TIGR00157 126 vfaGqSGVGKSSLiNlldp 144
                 ++ G SGVGK SL+N+ + 
  MMETSP1137-20121227|4461_1  12 IILGDSGVGKTSLMNQYVN 30 
                 789************8654 PP

>> TIGR03598  GTPase_YsxC: ribosome biogenesis GTP-binding protein YsxC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   0.00016     0.081      18      42 ..       8      32 ..       2      46 .. 0.84
   2 ?   -1.5   0.0      0.74   3.8e+02     129     184 ..     117     168 ..     111     170 .. 0.67

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 0.00016
   TIGR03598 18 lpeiafaGrSNvGKSsliNaLtnrk 42
                l ++ ++G S vGK sl+N+ +n+k
  MMETSP1137-20121227|4461_1  8 LLKVIILGDSGVGKTSLMNQYVNKK 32
                678999****************998 PP

  == domain 2    score: -1.5 bits;  conditional E-value: 0.74
   TIGR03598 129 kipvlvvltKaDklkkselkkalkkvkkelkkeeekvevllfSslkkegieelkae 184
                 ++p++v+ +K+D  ++  ++k++ ++ ++  +    +  + +S+++ +++e++ ++
  MMETSP1137-20121227|4461_1 117 NFPFVVLGNKVDLDSRVVTQKRALAWCTAKGE----IPHFETSAKEAINVEQAFQV 168
                 67888899999977777776666666553333....35566777777777777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (310 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       260  (0.0633837); expected 82.0 (0.02)
Passed bias filter:                      195  (0.0475378); expected 82.0 (0.02)
Passed Vit filter:                        54  (0.0131643); expected 4.1 (0.001)
Passed Fwd filter:                         8  (0.00195027); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.40u 0.19s 00:00:00.59 Elapsed: 00:00:01.10
# Mc/sec: 371.97
//
Query:       MMETSP1137-20121227|4462_1  [L=172]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (172 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        99  (0.0241346); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.13s 00:00:00.30 Elapsed: 00:00:00.30
# Mc/sec: 756.74
//
Query:       MMETSP1137-20121227|4463_1  [L=186]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (186 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       158  (0.0385178); expected 82.0 (0.02)
Passed bias filter:                       99  (0.0241346); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.13s 00:00:00.31 Elapsed: 00:00:00.32
# Mc/sec: 767.19
//
Query:       MMETSP1137-20121227|4464_1  [L=618]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   2.3e-136  453.4   0.0   2.8e-136  453.1   0.0    1.0  1  TIGR01810 betA: choline dehydrogenase
    5.5e-90  300.5   3.8    3.9e-66  221.8   0.1    2.0  2  TIGR03970 Rv0697: dehydrogenase, Rv0697 family
    0.00011   19.3   0.1    0.00021   18.3   0.1    1.5  1  TIGR01789 lycopene_cycl: lycopene cyclase
     0.0003   17.9   0.1     0.0005   17.1   0.1    1.3  1  TIGR01790 carotene-cycl: lycopene cyclase family protein
    0.00083   16.9   0.1     0.0015   16.1   0.1    1.3  1  TIGR02032 GG-red-SF: geranylgeranyl reductase family
     0.0051   13.5   0.0     0.0072   13.0   0.0    1.2  1  TIGR01988 Ubi-OHases: ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family
     0.0055   13.5   0.0      0.048   10.4   0.0    2.3  3  TIGR02462 pyranose_ox: pyranose oxidase
  ------ inclusion threshold ------
      0.028   11.2   0.0      0.043   10.6   0.0    1.2  1  TIGR00031 UDP-GALP_mutase: UDP-galactopyranose mutase
      0.044   10.4   0.0      0.061    9.9   0.0    1.1  1  TIGR01984 UbiH: 2-polyprenyl-6-methoxyphenol 4-hydroxylase


Domain annotation for each model (and alignments):
>> TIGR01810  betA: choline dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  453.1   0.0  6.1e-139  2.8e-136       1     529 [.      47     596 ..      47     598 .. 0.92

  Alignments for each domain:
  == domain 1    score: 453.1 bits;  conditional E-value: 6.1e-139
   TIGR01810   1 dyiiiGaGsaGsvlatrlsedvsnsvlvleaGgsdyrfdlliqmpaalayplsnkrynwayetepepflnnrrveaarGkvlGGsssinGmvyvrGnaldlekwakeeGleswayadvlpyykrletsdggeedyrGtdGpvkvrrgkadnplfealieaGveaGyektedlnGfk..qeGfGpldrtvtrGrrvsaarayldpalkrknlevrtralvdkivfegk.....ratGvefkkgg..ikervkankevilsagainspkllqlsGiGdaehlkelgielkvelpGvGenlqdhlelylqqackkpvslypalqkl....kqpviGaqwllgkkGvgasnhfeaggfvrsaeevkypniqyhflp.vaisydG........kkaakehGfqvhvGsmlsksrGhvkikskdpkekpailfnylshee..dkeefreairvtreilkqkaldlyrGreispGeevqtdeeidefvredaetalhpcgtckmGakddemsvvdpetrvhGleglrvvdasilprittGnlnapsimigekaadiirGk 529
                 dyi++G+G+aG  la+rls d+s  vlvleaG    r d+++++paal     +   +w ++te    l+++ v   rGk lGGss  n m+y rG a d++ w+   G+++w   +vlpyy   e   gge +y+G  Gp+ v+  + + pl +++++a  + G+    d+n +   qeGfG ++    +G r+saa+++l  a++r+nl v t al++++ ++++     ra Gve+  +g  +  +  an ev+l+aga+++p++l+lsGiG+  hl+e+gi++  + pGvGe +qdh  + + ++c+k + l   ++ +    + p + +qwl++kkG   s   + ggf r+++++++p++q  f+p +a s +G        ++a+ + Gf   + + + +s G+v++ s    +kp i   yls  +  d +  re i++ r++++ +a+d+yrG+e+ pG+ v+tde+ide++r  + +a   +++c+mGa++d+m+v+d++ rv G+ glrv+d+s +p+i+ G   ap++m++ekaa +++ +
  MMETSP1137-20121227|4464_1  47 DYILVGGGAAGCLLANRLSADPSIRVLVLEAGEDATR-DMRVRVPAALPKVF-KSELDWNFNTEKTEALKDKEVYLCRGKMLGGSSCANVMLYHRGTAADHDGWEA-AGADGWGSDQVLPYYTMHEDFVGGESQYHGVGGPLAVQDVPYQSPLSRSFLQAAGQLGFRANLDFNDWSgpQEGFGRYKVMQRNGERCSAASSFLALAKSRPNLRVCTGALASRVPLKSGdtgklRAEGVEYSVDGtkRVAKLAANGEVVLCAGAVQTPQILMLSGIGPRGHLQEMGIPVIKDAPGVGEGIQDHPAVLVSYECTKKICLTDKIKLFgssmTNPLVVLQWLFYKKGPLTSVACDHGGFFRTSPDMDQPDLQVRFVPaLASSANGmsallkysSAASPKSGFTTQLIACRPQSAGRVRLSSAAADAKPLIEDLYLSAANdaDIKTLREGIKLGRKMINARAFDEYRGEEVYPGSAVRTDEQIDEYIRGSVHSANALTSSCRMGASSDPMAVLDSQLRVRGVGGLRVADSSAMPHIIGGQTCAPTLMLAEKAAHMMLQQ 596
                 9******************************987777.*********97655.4568***********************************************99.9*****************************************************************98555********************************************997543444589******9994444556799*****************************************************************99876332267999****************************************55777777222222223455678***********************************9866126799***********************************************************************************************************998765 PP

>> TIGR03970  Rv0697: dehydrogenase, Rv0697 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  221.8   0.1   8.5e-69   3.9e-66       2     306 ..      47     359 ..      46     368 .. 0.90
   2 !   79.7   0.5   1.1e-25   4.8e-23     349     486 ..     446     593 ..     420     594 .. 0.81

  Alignments for each domain:
  == domain 1    score: 221.8 bits;  conditional E-value: 8.5e-69
   TIGR03970   2 DvlvvGaGsaGsvlaarLsedpsatvtvleaGpgyldpsrlpaqltdalrlPigaassvverygseLtdepr.raaaivrGrvlGGsgavnGayfcraleaDfeawsi...asWsyddvLpafraietDlDfetelhGsaGPipvrrtaelsgisaafvaaaraaGfgeeaDlngsgpdlsaGvgavPlnvddgrrvstavayLlPalkrpnLrveaetrvvrilfsat.....ravGvevlgdgaaet...lradrvvlcaGavesaalLllsGvGpaeqLraaGvavvldlP.vGsdtvDhPevvlpvrlekekdr 306
                 D ++vG+G+aG+ la+rLs+dps  v+vleaG   +        ++ +  lP    s++ +++++e t+  + ++  + rG++lGGs++ n   + r+++aD + w      +W  d+vLp+++  e  +  e++ hG  GP+ v+ ++  s++s++f +aa + Gf  + D n+  +++  G g+  +   +g+r s+a ++L  a +rpnLrv + + ++r+ ++++     ra Gve+  dg+++    +  + vvlcaGav+++++L+lsG+Gp ++L++ G++v+ d+P vG+ + DhP v++ ++ +k+  +
  MMETSP1137-20121227|4464_1  47 DYILVGGGAAGCLLANRLSADPSIRVLVLEAGEDATRD----MRVRVPAALPKVFKSELDWNFNTEKTEALKdKEVYLCRGKMLGGSSCANVMLYHRGTAADHDGWEAagaDGWGSDQVLPYYTMHEDFVGGESQYHGVGGPLAVQDVPYQSPLSRSFLQAAGQLGFRANLDFNDW-SGPQEGFGRYKVMQRNGERCSAASSFLALAKSRPNLRVCTGALASRVPLKSGdtgklRAEGVEYSVDGTKRVaklAANGEVVLCAGAVQTPQILMLSGIGPRGHLQEMGIPVIKDAPgVGEGIQDHPAVLVSYECTKKICL 359
                 889*****************************876655....34678999******************76441445667***************************9855568**************99999*******************************************7.5558*******************************************9986533444789****9998776411145689*****************************************************99987655 PP

  == domain 2    score: 79.7 bits;  conditional E-value: 1.1e-25
   TIGR03970 349 LmrpksrGeirlasadpaaapviehrydssa..aDrealregaalaeeLleave....astllepavkese....aswvrarlatsqhlsGsarmgaeddpaavvDarCrvrGvegLavvDtsilPaitsrGPhativmvaeraaefl 486
                   rp+s+G++rl+sa  +a+p ie  y s+a  aD ++lreg +l++++++a +     +  + p + +++    ++++r  +  +  l+ s+rmga+ dp+av+D++ rvrGv gL v+D+s +P i      a   m+ae+aa+++
  MMETSP1137-20121227|4464_1 446 ACRPQSAGRVRLSSAAADAKPLIEDLYLSAAndADIKTLREGIKLGRKMINARAfdeyRGEEVYPGSAVRTdeqiDEYIRGSVHSANALTSSCRMGASSDPMAVLDSQLRVRGVGGLRVADSSAMPHIIGGQTCAPTLMLAEKAAHMM 593
                 468*************************9983345679************9987767645555555444440011556666666666799****************************************99*************875 PP

>> TIGR01789  lycopene_cycl: lycopene cyclase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.1   4.7e-07   0.00021       1      36 [.      47      81 ..      47      87 .. 0.90

  Alignments for each domain:
  == domain 1    score: 18.3 bits;  conditional E-value: 4.7e-07
   TIGR01789  1 dvivvGgGlagglialrlqdarPdlrilvieaaasi 36
                d i+vGgG ag+l+a rl  a P +r+lv+ea++ +
  MMETSP1137-20121227|4464_1 47 DYILVGGGAAGCLLANRLS-ADPSIRVLVLEAGEDA 81
                789***************6.78**********9876 PP

>> TIGR01790  carotene-cycl: lycopene cyclase family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.1   1.1e-06    0.0005       1      34 [.      47      81 ..      47      86 .. 0.92

  Alignments for each domain:
  == domain 1    score: 17.1 bits;  conditional E-value: 1.1e-06
   TIGR01790  1 DliviGgGlAglaiAlela.kpglrvqlieaapkl 34
                D i++GgG Ag+++A +l+  p +rv ++ea +++
  MMETSP1137-20121227|4464_1 47 DYILVGGGAAGCLLANRLSaDPSIRVLVLEAGEDA 81
                89****************999*********98875 PP

>> TIGR02032  GG-red-SF: geranylgeranyl reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.1   3.2e-06    0.0015       1      32 [.      46      78 ..      46      88 .. 0.89

  Alignments for each domain:
  == domain 1    score: 16.1 bits;  conditional E-value: 3.2e-06
   TIGR02032  1 yDvvvvGaGpaGssaAlrl.akkGlrVlllekk 32
                yD + vG+G aG+ +A rl a+ ++rVl+le  
  MMETSP1137-20121227|4464_1 46 YDYILVGGGAAGCLLANRLsADPSIRVLVLEAG 78
                9***************9985788********86 PP

>> TIGR01988  Ubi-OHases: ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   0.0   1.6e-05    0.0072       1      34 [.      47      80 ..      47      98 .. 0.83

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 1.6e-05
   TIGR01988  1 divIvGgGlvGlalAlaLassadlkvalveakaa 34
                d + vGgG +G  lA +L+++++++v+++ea + 
  MMETSP1137-20121227|4464_1 47 DYILVGGGAAGCLLANRLSADPSIRVLVLEAGED 80
                6799**************************9843 PP

>> TIGR02462  pyranose_ox: pyranose oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.0   0.0      0.14        65       1      36 [.      46      82 ..      46     109 .. 0.79
   2 !   10.4   0.0   0.00011     0.048     251     317 ..     274     344 ..     243     379 .. 0.69
   3 ?   -3.4   0.0       1.5   6.9e+02     104     133 ..     544     573 ..     526     595 .. 0.52

  Alignments for each domain:
  == domain 1    score: 0.0 bits;  conditional E-value: 0.14
   TIGR02462  1 vdvfiaGsGPigatyakll.vdaglkvvmveiGaads 36
                +d +++G G  g+  a +l  d +++v+++e G+  +
  MMETSP1137-20121227|4464_1 46 YDYILVGGGAAGCLLANRLsADPSIRVLVLEAGEDAT 82
                79999**********966527888********98544 PP

  == domain 2    score: 10.4 bits;  conditional E-value: 0.00011
   TIGR02462 251 eveaalvrdllaserd.kkivak.sfvlaaGavataqilvnsgisslg.erdaarpp.sllpalGryiteq 317
                 ++ a  v+  + +++   k+ a+   vl+aGav+t+qil+ sgi+  g  ++  +p  +  p +G+ i + 
  MMETSP1137-20121227|4464_1 274 KLRAEGVEYSVDGTKRvAKLAANgEVVLCAGAVQTPQILMLSGIGPRGhLQEMGIPViKDAPGVGEGIQDH 344
                 555555554444443235666662467899**************988844554444312356666666555 PP

  == domain 3    score: -3.4 bits;  conditional E-value: 1.5
   TIGR02462 104 qeelenlsaeavtrgvGGmsthwtcatPrf 133
                  +++  l ++   rgvGG+    + a P++
  MMETSP1137-20121227|4464_1 544 SDPMAVLDSQLRVRGVGGLRVADSSAMPHI 573
                 334444444555555555554444444443 PP

>> TIGR00031  UDP-GALP_mutase: UDP-galactopyranose mutase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   9.5e-05     0.043       1      32 [.      45      77 ..      45      82 .. 0.86

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 9.5e-05
   TIGR00031  1 kfdyiivGaGlsGivlae.ilaklnkrvlvvek 32
                ++dyi+vG G +G +la+   a+ + rvlv+e 
  MMETSP1137-20121227|4464_1 45 QYDYILVGGGAAGCLLANrLSADPSIRVLVLEA 77
                59****************45567788****996 PP

>> TIGR01984  UbiH: 2-polyprenyl-6-methoxyphenol 4-hydroxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.0   0.00013     0.061       1      33 [.      47      79 ..      47      92 .. 0.88

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 0.00013
   TIGR01984  1 dviivGgglvGlslAlaLsrksklkialieaks 33
                d i+vGgg +G +lA+ Ls++ ++++ ++ea +
  MMETSP1137-20121227|4464_1 47 DYILVGGGAAGCLLANRLSADPSIRVLVLEAGE 79
                6799******************9******9854 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (618 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       107  (0.0260848); expected 82.0 (0.02)
Passed bias filter:                       96  (0.0234032); expected 82.0 (0.02)
Passed Vit filter:                        24  (0.0058508); expected 4.1 (0.001)
Passed Fwd filter:                         9  (0.00219405); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.52u 0.17s 00:00:00.69 Elapsed: 00:00:00.54
# Mc/sec: 1510.54
//
Query:       MMETSP1137-20121227|4465_1  [L=241]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.2e-05   22.4   0.0    3.7e-05   21.6   0.0    1.4  1  TIGR00369 unchar_dom_1: uncharacterized domain 1
     0.0044   15.2   0.0     0.0069   14.6   0.0    1.3  1  TIGR00051 TIGR00051: acyl-CoA thioester hydrolase, YbgC/YbaW family
     0.0082   14.2   0.0      0.013   13.6   0.0    1.4  1  TIGR02286 PaaD: phenylacetic acid degradation protein PaaD
  ------ inclusion threshold ------
      0.023   12.4   0.0      0.068   10.9   0.0    1.7  2  TIGR02447 yiiD_Cterm: putative thioesterase domain


Domain annotation for each model (and alignments):
>> TIGR00369  unchar_dom_1: uncharacterized domain 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.6   0.0   3.6e-08   3.7e-05      29      96 ..     135     206 ..     120     227 .. 0.74

  Alignments for each domain:
  == domain 1    score: 21.6 bits;  conditional E-value: 3.6e-08
   TIGR00369  29 lqpigsvHGGvlaaLadtagslaaaltkee...gkavvtlelnvnylrpareG.klrAiakvvhlGrqtgva 96 
                   + g +HGG  aaL+d ++  a+++ k++     +++t++lnvny  p++++ + + +  v ++ +q +v+
  MMETSP1137-20121227|4465_1 135 NGHPGIIHGGFTAALLDDLFGWASMSEKRAlgiDGMILTANLNVNYRMPVFGDnTYTITVWVDRVEKQKKVF 206
                 456799*************977766666543335799***************96655566666777777775 PP

>> TIGR00051  TIGR00051: acyl-CoA thioester hydrolase, YbgC/YbaW family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.0   6.7e-06    0.0069      49     101 ..     171     224 ..     153     235 .. 0.80

  Alignments for each domain:
  == domain 1    score: 14.6 bits;  conditional E-value: 6.7e-06
   TIGR00051  49 fvvvkikieYkkparlddvleirteleelkgvsvvfsq.eivredeallkaetk 101
                 ++  +++++Y+ p++ d++ +i+ +++++++++ vf    i   d ++l+++  
  MMETSP1137-20121227|4465_1 171 ILTANLNVNYRMPVFGDNTYTITVWVDRVEKQKKVFMNaSISDIDDNVLVEASA 224
                 556789*************************99999651576666666655554 PP

>> TIGR02286  PaaD: phenylacetic acid degradation protein PaaD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   0.0   1.2e-05     0.013      24      55 ..     131     163 ..     107     218 .. 0.83

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 1.2e-05
   TIGR02286  24 edmlngh.gtahGGllfalADsaFAlacNsage 55 
                  d lngh g+ hGG+  al D  F  a+ s++ 
  MMETSP1137-20121227|4465_1 131 GDELNGHpGIIHGGFTAALLDDLFGWASMSEKR 163
                 589****89******************999876 PP

>> TIGR02447  yiiD_Cterm: putative thioesterase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   6.6e-05     0.068      23      94 ..     123     194 ..     109     212 .. 0.70
   2 ?   -1.7   0.0      0.51   5.2e+02      59      90 ..     207     238 ..     202     240 .. 0.72

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 6.6e-05
   TIGR02447  23 eltlsaplaaNlNhketvFgGSlyslat..LsgWgllylrlqelkiegdiviadseirYlaPvtgdlkaeceap 94 
                 ++tl + l   lN +  +  G   ++    L gW+ +  + + l+i+g i+ a+ +++Y  Pv gd    ++++
  MMETSP1137-20121227|4465_1 123 QITLLVELGDELNGHPGIIHGGFTAALLddLFGWASMS-EKRALGIDGMILTANLNVNYRMPVFGDNTY-TITV 194
                 46666677778887776666665555541255665544.56789********************99754.4444 PP

  == domain 2    score: -1.7 bits;  conditional E-value: 0.51
   TIGR02447  59 lrlqelkiegdiviadseirYlaPvtgdlkae 90 
                 ++     i+ +++++ s +  ++Pv + l+a+
  MMETSP1137-20121227|4465_1 207 MNASISDIDDNVLVEASALYIIKPVGKPLEAT 238
                 55555667778888888888889998888775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (241 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       104  (0.0253535); expected 82.0 (0.02)
Passed bias filter:                       98  (0.0238908); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.22u 0.13s 00:00:00.35 Elapsed: 00:00:00.35
# Mc/sec: 908.84
//
Query:       MMETSP1137-20121227|4466_1  [L=321]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.5e-29  100.3   0.0      8e-19   65.8   0.0    2.1  2  TIGR00005 rluA_subfam: pseudouridine synthase, RluA family
    1.9e-10   38.2   0.0    0.00011   19.3   0.0    2.1  2  TIGR01621 RluA-like: pseudouridine synthase Rlu family protein, TIGR01621


Domain annotation for each model (and alignments):
>> TIGR00005  rluA_subfam: pseudouridine synthase, RluA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.8   0.0   3.9e-22     8e-19      20     141 ..      88     214 ..      78     215 .. 0.78
   2 !   33.2   0.3   3.5e-12   7.2e-09     221     251 ..     215     245 ..     213     269 .. 0.84

  Alignments for each domain:
  == domain 1    score: 65.8 bits;  conditional E-value: 3.9e-22
   TIGR00005  20 srskikklieegqVkvnkkkvtanlklkikdgdlvtveveee....eeaevpvedkpldilfeDedilvidKPsglvvhptggyekntvlnallahlkeel....vsrleivhRLDrdTSGllvvaktek 141
                 s+s++k++ +   V vn   ++      + ++++++   +++     + +  + + pl i++eD+d+ v+ KP+g++v ++++ + n v  +l++ l+ ++    + r+++vhRLD  TSGllvvak++ 
  MMETSP1137-20121227|4466_1  88 SSSAAKRACRRSLVLVN--GEIGACGNHVGSNAVLELIARASapapGQGRRSTGSVPLRIVYEDDDMAVVYKPAGIPVAGSQEGRLN-VRTMLAYSLQPSQnaepLWRPQHVHRLDAPTSGLLVVAKSRX 214
                 67788888888889999..45566667788888777444443111123344445556***********************9999988.999999998866678899*********************986 PP

  == domain 2    score: 33.2 bits;  conditional E-value: 3.5e-12
   TIGR00005 221 GRtHQiRVHlqylghplagDplYgnksvkgk 251
                 GRtHQ+R H+++lghp++gD++Y  ++ +++
  MMETSP1137-20121227|4466_1 215 GRTHQLRRHMASLGHPIVGDDKYWPRHMPEH 245
                 ***********************98887543 PP

>> TIGR01621  RluA-like: pseudouridine synthase Rlu family protein, TIGR01621
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.0   7.8e-08   0.00016       2      63 ..     143     212 ..     142     215 .. 0.81
   2 !   19.3   0.0   5.5e-08   0.00011     138     165 ..     210     237 ..     209     247 .. 0.89

  Alignments for each domain:
  == domain 1    score: 18.8 bits;  conditional E-value: 7.8e-08
   TIGR01621   2 leilfrhsdfvlinksegisvhkddg.....etglleevakqlgvekvy...lvhrldkvtsGilllaln 63 
                 l i+++ +d+ ++ k+ gi v   ++      t+l+  +    + e ++    vhrld  tsG+l++a+ 
  MMETSP1137-20121227|4466_1 143 LRIVYEDDDMAVVYKPAGIPVAGSQEgrlnvRTMLAYSLQPSQNAEPLWrpqHVHRLDAPTSGLLVVAKS 212
                 579******************98877223224677777888889999995555**************986 PP

  == domain 2    score: 19.3 bits;  conditional E-value: 5.5e-08
   TIGR01621 138 lkphtGkthqlrvalkslGsailGdsly 165
                  k + G+thqlr  + slG +i+Gd  y
  MMETSP1137-20121227|4466_1 210 AKSRXGRTHQLRRHMASLGHPIVGDDKY 237
                 57889********************988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (321 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        82  (0.0199902); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.28u 0.13s 00:00:00.41 Elapsed: 00:00:00.39
# Mc/sec: 1086.37
//
Query:       MMETSP1137-20121227|4467_1  [L=381]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.25    8.4   6.2       0.52    7.3   4.3    1.6  1  TIGR00599 rad18: DNA repair protein rad18


Domain annotation for each model (and alignments):
>> TIGR00599  rad18: DNA repair protein rad18
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   4.3   0.00013      0.52      29      73 ..     319     365 ..     282     367 .. 0.87

  Alignments for each domain:
  == domain 1    score: 7.3 bits;  conditional E-value: 0.00013
   TIGR00599  29 ChvCkdffkaPvltsCsHt.FCslCiRr.cLseepkCPlCraedqEs 73 
                 C +C d   +     C+H   C+ C    c   ++kCP+Cra+ +E 
  MMETSP1137-20121227|4467_1 319 CVICCDKEVSVAFYRCGHMcSCAACAHAlCSDAQGKCPICRAPVREI 365
                 9999998888888999996258899987355689*********9996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (381 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       123  (0.0299854); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.30u 0.15s 00:00:00.44 Elapsed: 00:00:00.41
# Mc/sec: 1226.53
//
Query:       MMETSP1137-20121227|4468_1  [L=186]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (186 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       100  (0.0243784); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.15s 00:00:00.32 Elapsed: 00:00:00.33
# Mc/sec: 743.94
//
Query:       MMETSP1137-20121227|4469_1  [L=383]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.4e-14   50.2   8.2    4.4e-14   49.8   5.7    1.0  1  TIGR00792 gph: sugar (Glycoside-Pentoside-Hexuronide) transporter


Domain annotation for each model (and alignments):
>> TIGR00792  gph: sugar (Glycoside-Pentoside-Hexuronide) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.8   5.7   1.1e-17   4.4e-14      87     383 ..      30     350 ..      22     355 .. 0.75

  Alignments for each domain:
  == domain 1    score: 49.8 bits;  conditional E-value: 1.1e-17
   TIGR00792  87 lFttldfsataklvyayitYillgllYslvdipywslvpaltkdsreReklatlrrfl.atlglllvavlvlplvslfgg......edeklGyfvfalvlalvgvvlllvvffgtkErv..deirkekekklslkkv...lkallkNdqllilllaalfyllainilnav..qvYYfkYvlgdaelfsilllialvaalisvlllPrlvkklgrkk.lfligllla..vlgllillvvssnlvlilvlailagillnlvtllvwvl.........vaDtvdYgelktgkRaeglvlsvrtfvdKlgqAlagalvglilgiiGy 383
                 l+ +++ s   k  ++++  i++ ++ +   +p +++v+ l ++  +R ++  + +++ a++g+ + a +   +  + ++        +  Gy    +++ +++ +++ ++  gt+ ++  ++  ++ +  l ++++     all+ + +++l + +l+  +a  +  ++   +  f + +++++ ++++l  ++   l++ +l P+ +  +g+k  +f +g+++   +l l +ll +  n + + ++a++ ++      + +  +          aD v+ ge++tg R+eg+ + ++++vdK+g +++ ++++ +l+ +G 
  MMETSP1137-20121227|4469_1  30 LYGDPNESGLFKWLFFWL--ITVKVCLTCFQVPHMAMVAELVSSYDDRSAIMGFYFLFrAAIGFATAAAIGYHFFIKDSEpgagnwLFNIKGYEDYGTLVTIAAAITMTISTVGTHSQIphQNKLVQGAPPLRVSDIprkYGALLTDQSFIALFFSQLLSQTAWGMYIGFlyILNIFIFKINSQQIAAYALWNYVPFFLAAFILSPLSMIYFGKKWaTFGWGVVATavLLNLSLLLRITDNFPENCTGAVFTAFTACSLVAHTCSMcysiggatlNADLVESGEMRTGDRNEGVLFGFQNIVDKAGVGIGSSITSSVLQPVGC 350
                 555555555555555554..78999*************************99988765377888777777666655555567755544667999999*********************9654444444555555554222779***************99988777776511566788999999999999999899999999***********996155555554311344445555557888777777766664433333333334667888889******************************************98885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (383 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       129  (0.0314481); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.29u 0.15s 00:00:00.43 Elapsed: 00:00:00.44
# Mc/sec: 1148.91
//
Query:       MMETSP1137-20121227|4470_1  [L=460]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (460 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        46  (0.011214); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.14s 00:00:00.44 Elapsed: 00:00:00.53
# Mc/sec: 1145.57
//
Query:       MMETSP1137-20121227|4471_1  [L=399]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (399 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        71  (0.0173086); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.15s 00:00:00.43 Elapsed: 00:00:00.59
# Mc/sec: 892.60
//
Query:       MMETSP1137-20121227|4472_1  [L=218]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.3e-43  145.8   0.2    3.6e-43  145.7   0.1    1.0  1  TIGR01832 kduD: 2-deoxy-D-gluconate 3-dehydrogenase
    4.3e-42  142.3   0.0    4.7e-42  142.1   0.0    1.0  1  TIGR01830 3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase
    2.9e-33  113.0   0.0      2e-32  110.3   0.0    1.8  1  TIGR01963 PHB_DH: 3-hydroxybutyrate dehydrogenase
    6.1e-32  109.0   0.0    6.5e-32  108.9   0.0    1.0  1  TIGR01829 AcAcCoA_reduct: acetoacetyl-CoA reductase
    7.1e-32  108.6   0.1    8.1e-32  108.5   0.0    1.0  1  TIGR02415 23BDH: acetoin reductases
    4.7e-30  102.6   0.6    5.7e-30  102.3   0.4    1.0  1  TIGR03206 benzo_BadH: 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase
    1.9e-27   94.2   0.0    2.3e-27   93.9   0.0    1.0  1  TIGR03971 SDR_subfam_1: oxidoreductase, SDR family
    4.5e-20   69.4   1.0    5.2e-20   69.2   0.7    1.0  1  TIGR02632 RhaD_aldol-ADH: rhamnulose-1-phosphate aldolase/alcohol dehydrogenase
    6.8e-20   69.3   0.3    8.1e-20   69.0   0.2    1.0  1  TIGR01831 fabG_rel: putative 3-oxoacyl-(acyl-carrier-protein) reductase
    1.7e-18   64.6   0.1    2.2e-18   64.3   0.0    1.1  1  TIGR03325 BphB_TodD: cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase
    6.4e-14   49.5   0.5    2.5e-13   47.6   0.3    1.8  1  TIGR02685 pter_reduc_Leis: pteridine reductase
    1.3e-12   45.5   0.0    1.6e-12   45.2   0.0    1.1  1  TIGR01500 sepiapter_red: sepiapterin reductase


Domain annotation for each model (and alignments):
>> TIGR01832  kduD: 2-deoxy-D-gluconate 3-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  145.7   0.1   1.1e-45   3.6e-43      24     236 ..       3     216 ..       1     218 [] 0.92

  Alignments for each domain:
  == domain 1    score: 145.7 bits;  conditional E-value: 1.1e-45
   TIGR01832  24 glaeaGadivgvg..iselsetqekvealGrkflslkadladeeaakalvdeaveeagkidilvnnaGiirredavefsekdwddvlnvnlkavfllsqavakkllkqGrkgkiiniasllsfq..GGirvpsytasksavaGltkllanewakkginvnaiaPGyletnntealradekrnaaileriPagrwGepedlagaavflassasdyvnG 236
                 +la+aGa +  ++     l+e  + ++++G +++++ +dl+  e+   +v ++ +e g id+lvnnaG+   ++a++ + + +d+++ +n ka ++lsqava++++ + r g iin+asl s++  GGi  + y+ sk av  +t++la ewa k+i+vna+ PGy+et+  ea+ a e+  +a ++ +P+ r  + edl g+ ++las+a   ++G
  MMETSP1137-20121227|4472_1   3 TLAAAGASVGLIArrADRLQELSASLQREGSRAHAIAVDLQRVEQFGDVVRQIEDELGPIDVLVNNAGMSIDAKALDATPEAFDAIFSTNTKAPYFLSQAVARRMVSTNRPGSIINVASLASLRvvGGI--SLYAMSKAAVDHMTRALAREWAGKDIRVNALLPGYIETELNEAFFATEAG-RAFIKTLPNRRLAQKEDLDGPLLLLASDAGRGMSG 216
                 68999999855552156789****************************************************************************************************998733666..679*****************************************998875.567799***********************988877 PP

>> TIGR01830  3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  142.1   0.0   1.4e-44   4.7e-42      16     229 ..       2     216 ..       1     218 [] 0.95

  Alignments for each domain:
  == domain 1    score: 142.1 bits;  conditional E-value: 1.4e-44
   TIGR01830  16 kklakegakvviterskeekaeelaeelkeagvkaaavkldvsdeeevkelveeveeelgeidilvnnAGitrDklllrmkeedwdevikvnLkgvfnvtkavlkkmik.krsGriinissvvgllGnagqanYaasKaGligltkslakElasrnitvnavaPGfietdmtekl.sekvkkkileqiplkrlgkpeevaaavafLasdeasyitG 229
                 ++la++ga+v +  r ++++++el+++l+ +g +a+a+++d+++ e++ ++v+++e+elg id+lvnnAG++ D+ +l  + e +d++ ++n k+ + +++av+++m+  +r G+iin++s+++l    g + Ya sKa +  +t++la+E a ++i+vna+ PG+iet++ e++   +  +++ +++p +rl+++e++   ++ Lasd+ + ++G
  MMETSP1137-20121227|4472_1   2 RTLAAAGASVGLIAR-RADRLQELSASLQREGSRAHAIAVDLQRVEQFGDVVRQIEDELGPIDVLVNNAGMSIDAKALDATPEAFDAIFSTNTKAPYFLSQAVARRMVStNRPGSIINVASLASLRVVGGISLYAMSKAAVDHMTRALAREWAGKDIRVNALLPGYIETELNEAFfATEAGRAFIKTLPNRRLAQKEDLDGPLLLLASDAGRGMSG 216
                 689*********955.7788***************************************************************************************853799***********************************************************986267888999*************************9877766 PP

>> TIGR01963  PHB_DH: 3-hydroxybutyrate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  110.3   0.0   5.7e-35     2e-32      19     244 ..       2     217 ..       1     218 [] 0.92

  Alignments for each domain:
  == domain 1    score: 110.3 bits;  conditional E-value: 5.7e-35
   TIGR01963  19 kelaaaGakvvvndleeeaaeaaakeleeaggevlalkadvtkeeeiadlieavaaefgsldiLvnnAGiqhvapieefptekfekiiavnltsafhtiraalpimkkqgw.GriiniasvhglvasafKsaYvaaKHglvGltKvlAlEvAetgitanaicPgyvrtpLvekqiadqaktrgiseeqvvkevllkkqptkrfvtveevaelalflasdaaaqitGq 244
                 ++laaaGa+v +   +++ +++++++l+++g ++ a+++d+ + e+  d+++++++e+g +d+LvnnAG+ + a+  +  +e f++i + n ++++ +++a+ + m  +++ G iin+as  +l+     s Y  +K ++  +t++lA E A ++i++na+ Pgy++t L e+ +a +a              ++k+ p++r+ + e++ + +l lasda++++ G+
  MMETSP1137-20121227|4472_1   2 RTLAAAGASVGLIARRADRLQELSASLQREGSRAHAIAVDLQRVEQFGDVVRQIEDELGPIDVLVNNAGMSIDAKALDATPEAFDAIFSTNTKAPYFLSQAVARRMVSTNRpGSIINVASLASLRVVGGISLYAMSKAAVDHMTRALAREWAGKDIRVNALLPGYIETELNEAFFATEAGRA-----------FIKTLPNRRLAQKEDLDGPLLLLASDAGRGMSGA 217
                 68********************************************************************************************************8876549***********************************************************9999877543...........4566788888888888888888888888877775 PP

>> TIGR01829  AcAcCoA_reduct: acetoacetyl-CoA reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  108.9   0.0   1.9e-34   6.5e-32      20     231 ..       4     216 ..       1     218 [] 0.90

  Alignments for each domain:
  == domain 1    score: 108.9 bits;  conditional E-value: 1.9e-34
   TIGR01829  20 lakdGykvvanvapneerakewlqekevegfdvavvkadvssfeeakaavakveaelGpvdvlvnnaGitrdavfkkmtkeqWeevidtnlnsvfnvtrpviegmler.gfGriinissvnGlkGqfGqanysaakaGliGftkalaqegakkgvtvnviaPGyiatemvkav.redvlkkivaqiPvkrlgkpeeiaaavaflaseeagyvtG 231
                 la++G  v   +a  ++r +e+  + + eg+  + + +d++ +e+  ++v+++e+elGp+dvlvnnaG+  da     t e+++++ +tn ++ + + + v   m+     G iin++s+  l+   G + y+ +ka +  +t+ala+e a k++ vn++ PGyi+te+ +a    +  ++ ++++P +rl++ e++   +  las+++  + G
  MMETSP1137-20121227|4472_1   4 LAAAGASVG-LIARRADRLQELSASLQREGSRAHAIAVDLQRVEQFGDVVRQIEDELGPIDVLVNNAGMSIDAKALDATPEAFDAIFSTNTKAPYFLSQAVARRMVSTnRPGSIINVASLASLRVVGGISLYAMSKAAVDHMTRALAREWAGKDIRVNALLPGYIETELNEAFfATEAGRAFIKTLPNRRLAQKEDLDGPLLLLASDAGRGMSG 216
                 566665553.233467778888888999999999***********************************************************************875157***********************************************************99725678889*************************99876666 PP

>> TIGR02415  23BDH: acetoin reductases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  108.5   0.0   2.4e-34   8.1e-32      19     193 ..       3     177 ..       1     198 [. 0.95

  Alignments for each domain:
  == domain 1    score: 108.5 bits;  conditional E-value: 2.4e-34
   TIGR02415  19 rLakdGfavavadlneetaketakelkekgtkavavkldvsdkseveeaveqaveklGeldvlvnnaGvalvtpileiteeeleklynvnvkgvlfGiqaaaekfkklkhkGkiinaasiagvegspelsaysstkfavrgltqtaakeLakkgitvnayaPGivktemreeide 193
                  La+ G +v +   + + ++e    l+ +g +a a+ +d++  +++ ++v+q  ++lG +dvlvnnaG++     l+ t+e ++ +++ n k+ +f  qa a+++  ++  G iin as+a+ + +   s+y+ +k av  +t++ a+e a k i vna  PG ++te+ e   +
  MMETSP1137-20121227|4472_1   3 TLAAAGASVGLIARRADRLQELSASLQREGSRAHAIAVDLQRVEQFGDVVRQIEDELGPIDVLVNNAGMSIDAKALDATPEAFDAIFSTNTKAPYFLSQAVARRMVSTNRPGSIINVASLASLRVVGGISLYAMSKAAVDHMTRALAREWAGKDIRVNALLPGYIETELNEAFFA 177
                 68889999999999999999****************************************************************************************************************************************************9987655 PP

>> TIGR03206  benzo_BadH: 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.3   0.4   1.7e-32   5.7e-30      21     234 ..       2     211 ..       1     217 [. 0.93

  Alignments for each domain:
  == domain 1    score: 102.3 bits;  conditional E-value: 1.7e-32
   TIGR03206  21 rrfaeegakvavldlnaeaaekvaaairekggkaeavavditdrasvdaavaaaeealgpvdvlvnnagwdvlkpflktekaewerliainltgalymhhavlkgmver.kagrivniasdaarvgssgeavyaackgglvafsktlarelarhgitvnvvcpgptdtalledvkseaekpeklieaftraiplgrlgkpddlagailflasdda 234
                 r +a  ga v ++   a+  ++++a+++ +g +a+a+avd+   +     v  +e+ lgp+dvlvnnag  +  + l++ +  ++ + + n +   ++  av++ mv   + g i+n+as a+     g ++ya+ k  +  ++++lare a ++i vn + pg  +t l e + +          af +++p  rl + +dl g +l+lasd  
  MMETSP1137-20121227|4472_1   2 RTLAAAGASVGLIARRADRLQELSASLQREGSRAHAIAVDLQRVEQFGDVVRQIEDELGPIDVLVNNAGMSIDAKALDATPEAFDAIFSTNTKAPYFLSQAVARRMVSTnRPGSIINVASLASLRVVGGISLYAMSKAAVDHMTRALAREWAGKDIRVNALLPGYIETELNEAFFAT-----EAGRAFIKTLPNRRLAQKEDLDGPLLLLASDAG 211
                 567889*****************************************************************************************************85267***********9999******************************************98776543.....33479*************************975 PP

>> TIGR03971  SDR_subfam_1: oxidoreductase, SDR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   93.9   0.0   6.7e-30   2.3e-27      51     256 ..      19     217 ..       7     218 .] 0.94

  Alignments for each domain:
  == domain 1    score: 93.9 bits;  conditional E-value: 6.7e-30
   TIGR03971  51 edldetaklvealGrkvlarkadvrkleelravveegveefGrldvvvanaGvlsygrafelseeqWdtvldvnlkGvWktvkavvPalierknGGsiiivssvaglkalpglahyaaakhGlvgltktlanelaeygirvnsihPtsvdtamiepeamrelfakreeaaraflpalpvsglvepedvadvvawlasdesryitGa 256
                 + l+e  + ++  G ++ a  +d++++e+  +vv++  +e+G +dv+v+naG+   ++a + ++e++d +  +n k  +   +av   ++  +  Gsii v+s a+l+ + g + ya +k  +  +t++la+e a  +irvn++ P  ++t++ e      +fa+  ea raf+++lp + l + ed+ +  + lasd  r ++Ga
  MMETSP1137-20121227|4472_1  19 DRLQELSASLQREGSRAHAIAVDLQRVEQFGDVVRQIEDELGPIDVLVNNAGMSIDAKALDATPEAFDAIFSTNTKAPYFLSQAVARRMVSTNRPGSIINVASLASLRVVGGISLYAMSKAAVDHMTRALAREWAGKDIRVNALLPGYIETELNE-----AFFAT--EAGRAFIKTLPNRRLAQKEDLDGPLLLLASDAGRGMSGA 217
                 45888899999*******************************************************************************************************************************************99877.....55654..6789*****************************999986 PP

>> TIGR02632  RhaD_aldol-ADH: rhamnulose-1-phosphate aldolase/alcohol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.2   0.7   1.5e-22   5.2e-20     432     597 ..       2     165 ..       1     182 [. 0.96

  Alignments for each domain:
  == domain 1    score: 69.2 bits;  conditional E-value: 1.5e-22
   TIGR02632 432 rrlvdeGahvvladldaeaaeavaaelvdkfGadkavalkldvtdeeavkaafaevalayGGvdivvnnaGiavskpleeteleeWdlnldilatGyflvareaarllrkqglggnlvfiasknavvakknalaysaakaaeahlvrllaielaelgirvntvaPd 597
                 r l++ Ga v l+   a+++++  a l+ + G  +a a+ +d+   e+   +++++  + G +d++vnnaG+++ ++  + + e +d  +  +++  +++++  ar +   + +g+++ +as  ++    + + y+ +kaa  h+ r la e a + irvn+++P 
  MMETSP1137-20121227|4472_1   2 RTLAAAGASVGLIARRADRLQELSASLQ-REG-SRAHAIAVDLQRVEQFGDVVRQIEDELGPIDVLVNNAGMSIDAKALDATPEAFDAIFSTNTKAPYFLSQAVARRMVSTNRPGSIINVASLASLRVVGGISLYAMSKAAVDHMTRALAREWAGKDIRVNALLPG 165
                 789***********************99.666.5899*****************************************************************************************************************************9996 PP

>> TIGR01831  fabG_rel: putative 3-oxoacyl-(acyl-carrier-protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.0   0.2   2.4e-22   8.1e-20      17     223 ..       3     210 ..       1     214 [. 0.91

  Alignments for each domain:
  == domain 1    score: 69.0 bits;  conditional E-value: 2.4e-22
   TIGR01831  17 klaadgfeiavhyrsdradaeesvaairaqggnarllkfdvadrvavrevleadiaehgayygvvlnagiardaafpalseedwdavietnldgfynvihplvmpmirarkggriitlasvsgvmgnrgqvnysaakagligatkalavelakrkitvnciapglidtemvaev..ekdlkealklvpmkrvgkaeevaalaaflmsdd 223
                  laa+g  +++  r+     +e  a+++ +g+ a+ +  d++  ++  +v+ +  +e g    +v nag++ da     + e +da++ tn  + y + + +   m+ + + g ii +as++ +    g   y+ +ka +   t+ala e a + i vn + pg i+te+ +     ++ +  +k++p +r+ + e++ +    l sd 
  MMETSP1137-20121227|4472_1   3 TLAAAGASVGLIARRAD-RLQELSASLQREGSRAHAIAVDLQRVEQFGDVVRQIEDELGPIDVLVNNAGMSIDAKALDATPEAFDAIFSTNTKAPYFLSQAVARRMVSTNRPGSIINVASLASLRVVGGISLYAMSKAAVDHMTRALAREWAGKDIRVNALLPGYIETELNEAFfaTEAGRAFIKTLPNRRLAQKEDLDGPLLLLASDA 210
                 69********9888754.56788899****************9999999998888889***************9888889999*******************************************99*****************************************9887521445567799***********9998888777775 PP

>> TIGR03325  BphB_TodD: cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.3   0.0   6.4e-21   2.2e-18      26     193 ..       5     173 ..       2     196 .. 0.85

  Alignments for each domain:
  == domain 1    score: 64.3 bits;  conditional E-value: 6.4e-21
   TIGR03325  26 vaegarvavldksaagleeleaa...hgdkvvgvegdvrllddhkeavarcveafgkldtlipnagiwdystalvdipddrideafdevfeinvkgyllavkaalpalvas.r.gsviftvsnagfypngggalytaakhavvglvkelayelapy.vrvngvapgglstdlrg 193
                  a ga v+++ + a++l+el a     g++  +++ d + +++  + v++  +++g +d+l++nag+   + al   p     eafd +f+ n k+  +  +a+   +v++ r gs+i   s a +   gg +ly+ +k av  + + la e+a + +rvn + pg + t+l  
  MMETSP1137-20121227|4472_1   5 AAAGASVGLIARRADRLQELSASlqrEGSRAHAIAVDLQRVEQFGDVVRQIEDELGPIDVLVNNAGMSIDAKALDATP-----EAFDAIFSTNTKAPYFLSQAVARRMVSTnRpGSIINVASLASLRVVGGISLYAMSKAAVDHMTRALAREWAGKdIRVNALLPGYIETELNE 173
                 578*****************974333799*************************************988888875555.....79**********966666666666655414599999999*******************************8644*************9975 PP

>> TIGR02685  pter_reduc_Leis: pteridine reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.6   0.3   7.2e-16   2.5e-13      60     205 ..      41     166 ..       2     216 .. 0.73

  Alignments for each domain:
  == domain 1    score: 47.6 bits;  conditional E-value: 7.2e-16
   TIGR02685  60 dlsnsasllssceeiidacfrafGrcdvlvnnasafyptpllrgdaeegaaekkslevqvaelfGsnaiaplllikafaqrqkgtraelrssnlsivnlvdamtdqpllgfslytmakealeGltrsaalelaslqirvngvapGl 205
                 dl  ++ + +   +i      + G  dvlvnna           da+   a  ++       +f +n+ ap++l +a a+r+       +++  si+n++     + + g sly+m+k a++ +tr+ a e a ++irvn++ pG 
  MMETSP1137-20121227|4472_1  41 DLQRVEQFGDVVRQI----EDELGPIDVLVNNAGMSI-------DAKALDATPEA----FDAIFSTNTKAPYFLSQAVARRMVS-----TNRPGSIINVASLASLRVVGGISLYAMSKAAVDHMTRALAREWAGKDIRVNALLPGY 166
                 555554444433333....345677777777776432.......33322223333....34589*****************954.....456679***998877788889**********************************95 PP

>> TIGR01500  sepiapter_red: sepiapterin reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.2   0.0   4.7e-15   1.6e-12      24     202 ..       4     173 ..       1     193 [. 0.88

  Alignments for each domain:
  == domain 1    score: 45.2 bits;  conditional E-value: 4.7e-15
   TIGR01500  24 lkaegsvlvLlaRndeaLkeskaeieaevsalsvdlvsldleaakdvedllkaleesikkeeyerillinnaGtlgdvskrekelsDsknvqkyydsnvtslvvltsellkklkelqglektvvnlssLcaikpfkswalYCaskaaRdmffqvLaleek.edvkvLnYapGvlDtdmqs 202
                 l a g  + L+aR  + L+e+ a+++   ++ + +  ++dl+ +++  d+++ +e++ ++ +    +l+nnaG   d  k  +  +  +  +  + +n+ +   l+  + + +  +   +  ++n++sL++++ + +++lY  skaa d + ++La e   +d++v    pG ++t++++
  MMETSP1137-20121227|4472_1   4 LAAAGASVGLIARRADRLQELSASLQR--EGSRAHAIAVDLQRVEQFGDVVRQIEDELGPID----VLVNNAGMSIDA-KALD--ATPEAFDAIFSTNTKAPYFLSQAVARRMV-STNRPGSIINVASLASLRVVGGISLYAMSKAAVDHMTRALAREWAgKDIRVNALLPGYIETELNE 173
                 56789999*****************87..78899999****999988888888887777765....799****88885.4444..456778889******************99.7788999**************************************9***************9875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (218 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       122  (0.0297416); expected 82.0 (0.02)
Passed bias filter:                       99  (0.0241346); expected 82.0 (0.02)
Passed Vit filter:                        21  (0.00511945); expected 4.1 (0.001)
Passed Fwd filter:                        12  (0.0029254); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.27u 0.14s 00:00:00.41 Elapsed: 00:00:00.44
# Mc/sec: 653.95
//
Query:       MMETSP1137-20121227|4473_1  [L=242]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.1e-94  314.3   4.1    1.2e-94  314.1   2.9    1.0  1  TIGR01310 L7: 60S ribosomal protein L7
    1.2e-22   78.5   0.3    1.9e-22   77.9   0.2    1.3  1  TIGR01309 L30P_arch: ribosomal protein L30P


Domain annotation for each model (and alignments):
>> TIGR01310  L7: 60S ribosomal protein L7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  314.1   2.9   5.8e-98   1.2e-94       1     236 []       6     242 .]       6     242 .] 0.98

  Alignments for each domain:
  == domain 1    score: 314.1 bits;  conditional E-value: 5.8e-98
   TIGR01310   1 pelllkkrkaeqelkkeaakkkklkkkenkkkkkkkfkRaekfvkeyekaerekirlkreakkkgklyveaekklvFviRikginkldpkvrkvlklLrLkkvnngvFvkvnkatlelLrivePyVayGyPnlksvreLiyKrGfakidgkrvpltdnalieqaLgkf...gvicieDliheiatvGphFkevnnfLwpfkLssPskgfkkkkkkksfkeggdaGnreekINeLikkmv 236
                 pe++lkkrk+ ++ ++e++  +k+++ e kkkk+++fkRae++vkey+++e + i lkr a+k+g++ v+ e+kl+Fv+R++gin+++pk+r+++++LrL ++nngvF++vnkat+++L +v+Py++yGyPnlk+vr+L+yKrG+aki+g+r+pltdn++ie+aL k+    +ic+eDl+hei+tvGp+Fk+ ++fLwpfk+++P++gf+    +++f+eggdaGnree +NeLi++m+
  MMETSP1137-20121227|4473_1   6 PESVLKKRKRAEKWQSEKETAAKAAEGEAKKKKEEIFKRAEAYVKEYRDKEEQLITLKRAARKAGTFHVPPEEKLLFVMRLRGINGMEPKMRHIMQVLRLLQINNGVFMRVNKATMNMLVKVDPYIMYGYPNLKTVRDLVYKRGYAKINGQRIPLTDNKIIEDALSKKtkgSIICMEDLVHEIYTVGPYFKQCTKFLWPFKMNCPVGGFRR--IRNHFVEGGDAGNREEYVNELIRRML 242
                 799******************************************************************************************************************************************************************9763336*************************************99..9999********************95 PP

>> TIGR01309  L30P_arch: ribosomal protein L30P
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.9   0.2   9.4e-26   1.9e-22       3     151 .]      83     242 .]      81     242 .] 0.87

  Alignments for each domain:
  == domain 1    score: 77.9 bits;  conditional E-value: 9.4e-26
   TIGR01309   3 viriRGtvdvkrdiedtlelLrlrkvnhavlvpeteslkgmlqkvkdyvtyGeidedtLeellrkRgr..lkGdk.kvtdeyv.ke....ktg..lesveelakalvegeikleeag.lkpviRLhPPrkGfesikkaykegGelGyrgekineLlkkml 151
                 v+r+RG  +++ ++ + +++Lrl ++n+ v ++ ++++ +ml kv++y+ yG  + +t+++l+ kRg   ++G++  +td+ + ++    kt+  +  +e+l+++++    ++++ + +   ++++ P +Gf  i++++ egG++G r e +neL+++ml
  MMETSP1137-20121227|4473_1  83 VMRLRGINGMEPKMRHIMQVLRLLQINNGVFMRVNKATMNMLVKVDPYIMYGYPNLKTVRDLVYKRGYakINGQRiPLTDNKIiEDalskKTKgsIICMEDLVHEIYTVGPYFKQCTkFLWPFKMNCPVGGFRRIRNHFVEGGDAGNREEYVNELIRRML 242
                 89****************************************************************9755889874566654414411113331134579999999999999*998879999*************************************6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (242 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       267  (0.0650902); expected 82.0 (0.02)
Passed bias filter:                      182  (0.0443686); expected 82.0 (0.02)
Passed Vit filter:                        18  (0.0043881); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.29u 0.17s 00:00:00.46 Elapsed: 00:00:00.38
# Mc/sec: 840.56
//
Query:       MMETSP1137-20121227|4474_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        44  (0.0107265); expected 82.0 (0.02)
Passed bias filter:                       33  (0.00804486); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.14s 00:00:00.26 Elapsed: 00:00:00.22
# Mc/sec: 305.97
//
Query:       MMETSP1137-20121227|4475_1  [L=1049]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     7e-105  348.4   0.0    5.2e-52  174.7   0.0    3.2  3  TIGR00975 3a0107s03: phosphate ABC transporter, phosphate-binding protein PstS
    4.8e-18   63.2   0.0    1.4e-08   32.1   0.0    4.3  2  TIGR02136 ptsS_2: phosphate binding protein
    0.00018   18.7   0.0      0.003   14.7   0.0    2.1  2  TIGR00971 3a0106s03: sulfate ABC transporter, sulfate-binding protein


Domain annotation for each model (and alignments):
>> TIGR00975  3a0107s03: phosphate ABC transporter, phosphate-binding protein PstS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  159.3   0.0   1.9e-50   2.6e-47      50     305 ..       2     270 ..       1     279 [. 0.88
   2 !   10.8   0.0   2.8e-05     0.039       2      56 ..     347     401 ..     346     417 .. 0.92
   3 !  174.7   0.0   3.8e-55   5.2e-52       1     314 [.     429     766 ..     429     767 .. 0.87

  Alignments for each domain:
  == domain 1    score: 159.3 bits;  conditional E-value: 1.9e-50
   TIGR00975  50 dfgasDaplse...aalkkegeqllqlplvigavvvayNlpgvs...keeLkLdgdvlakiflGkikkWndpaiaalNPevklPetkitvvhRsDgSGttavftkyLskvske.wkekvgaGktvnwpagvgakgNdGvaavvketpgaigYvelsyakenklsvaalknsaGkfvkpdaesikaaaagvkista......kedaksltdapgdeayPivaatylivlkkqkd..eekakalkaflewalt.egqkaaddldyiplPesvvk 305
                 dfg+ D p+++   +al+++g q+l++p ++ga+ v   +p  +   +++L+Ld  +lakif G+i++W+dp+i+a NP+++    +i v+hR  gS  ta ft+yL    ++ w   +g G+t+nwp+g+ ++g +G++ ++k   +aigY++ ++a  n l + +l n++G  +  ++  i aaa  + +++          a+ l+d pg++++Pi+ + yl + k+  +  + +a+ l af+e+ l  egq  a+++ +  lP+s+ +
  MMETSP1137-20121227|4475_1   2 DFGSGDIPMTAdrfNALTASGRQMLHIPFALGAIGVWHSVPAAElgaAGTLELDACLLAKIFSGQITTWGDPQIKASNPDLT-STAPIKVAHRKLGSSSTAGFTEYLLLKCPGsWT--LGSGSTINWPVGTENEGSGGMTDYIKANDYAIGYIDSGHAIDNDLIEVKLVNKNGLALFSKDADIGAAARIALANNDfpaadaDWSAVNLYDRPGNTTWPITMVSYLYLDKNLSYqdPGTAALLMAFVEFLLSeEGQVLAEENLFDRLPPSLIQ 270
                 9*********98888899999********************986334689******************************98.5779*******************99888887*9..*******************************************************8877777777776655444433456554556788********************998554338899999********978999************9876 PP

  == domain 2    score: 10.8 bits;  conditional E-value: 2.8e-05
   TIGR00975   2 tgaGstfpapliskwvedyeksnpakvtvnyqskGSgaGikqiaaktvdfgasDa 56 
                 +g+G+t p  l+ + +e  e++ +++  + y+++GS++G+++++   +d++   +
  MMETSP1137-20121227|4475_1 347 HGSGTTNPSRLFWEVMELLEARVKSNLVLSYRAVGSSTGQREFVCDPTDYAECNS 401
                 689**********************************************998765 PP

  == domain 3    score: 174.7 bits;  conditional E-value: 3.8e-55
   TIGR00975   1 ltgaGstfpapliskwvedyeksnpakvtvnyqskGSgaGikqia...........aktvdfgasDaplse...aalkkegeqllqlplvigavvvayNlpgvs...keeLkLdgdvlakiflGkikkWndpaiaalNPevklPetkitvvhRsDgSGttavftkyLskvskewkekvgaGktvnwpagvgakgNdGvaavvketpgaigYvelsyakenklsvaalknsaGkfvkpdaesikaaaagvkista......kedaksltdapgdeayPivaatylivlkk..qkdeekakalkaflewalt.egqkaaddldyiplPesvvkkvkkavnti 314
                 ++g+G+t p  l+ +  e  e++ +   +  y+++GS++G+++++            +  dfg+ D p+++   +al+++g q+l++p ++ga+ v   +p  +   +++L+Ld  +lakif G+i++W+dp+i+alNP++ +   +i v+hR  gS  ta ft+yLs   +     +g G+t+nwp+g+ ++g +G++ ++k   +aigY++ ++a  n l + +l n++G  +  ++  i aaa  + +++          a+ l+d++g  ++Pi+ + y+ v k+   kd+e+a+ + af+++ l  egq+ a ++ + plP+++ + +++a++ti
  MMETSP1137-20121227|4475_1 429 IHGSGTTNPSRLFWEVLEILEARSEHPLHTSYRAVGSSTGQREFVcdpadnpvcnfTAVNDFGSGDIPMTAdrxNALTASGRQMLHIPFALGAIGVWHSVPATElgaAGTLELDACLLAKIFSGQITTWGDPQIKALNPDL-VSTAPIKVAHRKLGSSSTAGFTEYLSLKCPSD-XTLGSGSTINWPVGTENEGSGGMTDYIKANDYAIGYIDSGHAIDNDLIEVKLVNKNGLALFSKDADIGAAARIALANNDfpaadaDWSAVNLYDKAGTSTWPITMVSYIYVDKDisSKDPETAALVMAFINFLLSpEGQALAVENLFDPLPPELIAFANEALATI 766
                 67999999999999999999999999999**************973333222222234569*********98988999999********************986444689*****************************98.68899*********************988874.47*******************************************************8877777777776655444433456554556788*********************9833567****************9******************99999988876 PP

>> TIGR02136  ptsS_2: phosphate binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.0   0.0   6.3e-09   8.6e-06     135     237 ..      53     197 ..       1     261 [. 0.64
   2 !   32.1   0.0     1e-11   1.4e-08      94     288 ..     494     745 ..     479     748 .. 0.74

  Alignments for each domain:
  == domain 1    score: 23.0 bits;  conditional E-value: 6.3e-09
   TIGR02136 135 dLtveqlkkIyeGeitnWkeVggk......lpnkkivvvgreassGTrdtFeeavlkkakikreke..........taqedngvvvqsvsknpnaigYlglgyvveskk.kvkplkvng.........................v 237
                 +L+   l kI++G+it+W + + k         ++i+v  r+ +s + + F+e  l k   +              t++e++g +   +  n +aigY+  g   ++    vk + +ng                         +
  MMETSP1137-20121227|4475_1  53 ELDACLLAKIFSGQITTWGDPQIKasnpdlTSTAPIKVAHRKLGSSSTAGFTEYLLLKCPGSWTLGsgstinwpvgTENEGSGGMTDYIKANDYAIGYIDSGHAIDNDLiEVKLVNKNGlalfskdadigaaarialanndfpaA 197
                 56677799**********9754443344444568*******************99877433333223355666667*****************************9966666666677677666555555555555555555551 PP

  == domain 2    score: 32.1 bits;  conditional E-value: 1e-11
   TIGR02136  94 sRpikeeekeklkqkgkelielkvAvdglavv..Vnkknvkvk...dLtveqlkkIyeGeitnWkeVggk......lpnkkivvvgreassGTrdtFeeavlkkakikreke..........taqedngvvvqsvsknpnaigYlglgyvveskk.kvkplkvng...............................vepskeniangsYqlsrplfiyvnkkpakk....keevkeFidfvlskdtqeklve 288
                 + p+ +   ++l + g ++  ++ A+ ++ v   V   +   +   +L+   l kI++G+it+W + + k         ++i+v  r+ +s + + F+e    k                  t++e++g +   +  n +aigY+  g   ++    vk + +ng                               + +  + + + +++++   +iyv+k   +k    + +v +Fi+f ls++ q  +ve
  MMETSP1137-20121227|4475_1 494 DIPMTADRXNALTASGRQMLHIPFALGAIGVWhsVPATELGAAgtlELDACLLAKIFSGQITTWGDPQIKalnpdlVSTAPIKVAHRKLGSSSTAGFTEYLSLKCPSDXTLGsgstinwpvgTENEGSGGMTDYIKANDYAIGYIDSGHAIDNDLiEVKLVNKNGlalfskdadigaaarialanndfpaadadwsAVNLYDKAGTSTWPITMVSYIYVDKDISSKdpetAALVMAFINFLLSPEGQALAVE 745
                 555555555566666666666666655555431133333322211157777799**********8744333333366789*******************98766544443334466888888*******************************666777777777************************9997766444556677899************9865553355678899********86665554 PP

>> TIGR00971  3a0106s03: sulfate ABC transporter, sulfate-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.0     0.026        35     233     269 ..     224     262 ..     217     279 .. 0.79
   2 !   14.7   0.0   2.2e-06     0.003     232     282 ..     710     762 ..     700     769 .. 0.82

  Alignments for each domain:
  == domain 1    score: 1.3 bits;  conditional E-value: 0.026
   TIGR00971 233 vvdkvv..ekkgtkkvaeaylkylyspeaqeiiaknyyr 269
                 ++dk++  +  gt +   a++++l s e+q ++ +n + 
  MMETSP1137-20121227|4475_1 224 YLDKNLsyQDPGTAALLMAFVEFLLSEEGQVLAEENLFD 262
                 568887224456888889**************9998764 PP

  == domain 2    score: 14.7 bits;  conditional E-value: 2.2e-06
   TIGR00971 232 svvdkvvekkgtkkva..eaylkylyspeaqeiiaknyyrvrdaevakkyedk 282
                  +vdk +  k+ + +a   a++++l spe+q ++ +n + +  +e++   +++
  MMETSP1137-20121227|4475_1 710 IYVDKDISSKDPETAAlvMAFINFLLSPEGQALAVENLFDPLPPELIAFANEA 762
                 479*****999777663379*******************99999988766665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1049 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       231  (0.056314); expected 82.0 (0.02)
Passed bias filter:                      168  (0.0409556); expected 82.0 (0.02)
Passed Vit filter:                        21  (0.00511945); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.82u 0.17s 00:00:00.99 Elapsed: 00:00:00.59
# Mc/sec: 2346.72
//
Query:       MMETSP1137-20121227|4476_1  [L=262]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        2.7    5.7  13.6      0.065   10.9   4.3    2.0  3  TIGR04032 toxin_SdpC: antimicrobial peptide, SdpC family


Domain annotation for each model (and alignments):
>> TIGR04032  toxin_SdpC: antimicrobial peptide, SdpC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   4.3   1.6e-05     0.065      91     154 ..      16      79 ..       9      86 .. 0.78
   2 ?   -2.7   0.3      0.24   9.9e+02     118     127 ..     111     120 ..      99     137 .. 0.47
   3 ?   -2.9   0.0      0.27   1.1e+03      40      60 ..     204     224 ..     194     233 .. 0.64

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 1.6e-05
   TIGR04032  91 qeaaaedeaatskdgkvtgeanlvavvavaavlavvvvaaVAvatvalaavavnpavdstpvae 154
                 q+a ++ +a++s  +    +  ++a++ +a+ +a v+ ++V+v+tv + +vav++av + +  +
  MMETSP1137-20121227|4476_1  16 QNASDSPQAQASHRAPASSSETALATALAAVSTATVSISTVTVSTVTVSIVAVHVAVVVDGARA 79 
                 44444455667777777777789999999999999********************999988655 PP

  == domain 2    score: -2.7 bits;  conditional E-value: 0.24
   TIGR04032 118 avaavlavvv 127
                 +vaa +  +v
  MMETSP1137-20121227|4476_1 111 VVAAQVEHAV 120
                 2222222222 PP

  == domain 3    score: -2.9 bits;  conditional E-value: 0.27
   TIGR04032  40 nnskeakelandlvakikkkd 60 
                  n +e  ++a  lva + ++d
  MMETSP1137-20121227|4476_1 204 LNLAEHGRVARHLVALLAQQD 224
                 566666666666666666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (262 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       364  (0.0887372); expected 82.0 (0.02)
Passed bias filter:                      118  (0.0287665); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.25u 0.18s 00:00:00.43 Elapsed: 00:00:00.26
# Mc/sec: 1330.04
//
Query:       MMETSP1137-20121227|4478_1  [L=162]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (162 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       119  (0.0290102); expected 82.0 (0.02)
Passed bias filter:                      109  (0.0265724); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.16s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 737.32
//
Query:       MMETSP1137-20121227|4479_1  [L=203]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (203 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        90  (0.0219405); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.17s 00:00:00.37 Elapsed: 00:00:00.38
# Mc/sec: 705.10
//
Query:       MMETSP1137-20121227|4480_1  [L=138]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (138 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        27  (0.00658216); expected 82.0 (0.02)
Passed bias filter:                       26  (0.00633837); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.14s 00:00:00.29 Elapsed: 00:00:00.25
# Mc/sec: 728.58
//
Query:       MMETSP1137-20121227|4481_1  [L=643]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (643 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       127  (0.0309605); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.17s 00:00:00.59 Elapsed: 00:00:00.43
# Mc/sec: 1973.70
//
Query:       MMETSP1137-20121227|4482_1  [L=296]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.8e-07   27.8   1.7     0.0067   13.9   0.5    2.1  2  TIGR01738 bioH: putative pimeloyl-BioC--CoA transferase BioH
    9.5e-05   19.7   0.3     0.0077   13.5   0.0    2.1  2  TIGR02427 protocat_pcaD: 3-oxoadipate enol-lactonase
     0.0035   14.2   0.1       0.19    8.6   0.0    2.3  2  TIGR03056 bchO_mg_che_rel: putative magnesium chelatase accessory protein


Domain annotation for each model (and alignments):
>> TIGR01738  bioH: putative pimeloyl-BioC--CoA transferase BioH
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.5   4.9e-06    0.0067      31      97 ..     118     190 ..      89     200 .. 0.66
   2 !   12.8   0.0   1.1e-05     0.014     173     215 ..     206     251 ..     197     265 .. 0.79

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 4.9e-06
   TIGR01738  31 ftlslvDLPGyGdsae.......l.ralslaevaeailaqapakaiwlGWsLGGLvalhlalthpdkvrsLvlva 97 
                   l++v+ PGyG ++        +  a +l + + a+  +ap+   + G sLG   a++la++h +   +L l++
  MMETSP1137-20121227|4482_1 118 TVLYVVEYPGYGAATGrpsekgcFeAADALWHHVTALGWDAPH-IFICGRSLGSGAAVYLAAKHVH-LAGLALIS 190
                 3589********9775111111121233455566666666666.7788****************98.67776665 PP

  == domain 2    score: 12.8 bits;  conditional E-value: 1.1e-05
   TIGR01738 173 ellaevDlRr...alqkisvPvLrlyGqkDalvPakvvealdklap 215
                  +l++ Dl +    ++++  P+  ++G+kD +vP   +++++++a 
  MMETSP1137-20121227|4482_1 206 RVLKHCDLMKnaeRMKHVHCPLTVIHGEKDHVVPCSHGRQIHRMAS 251
                 46788888651226899*************************9885 PP

>> TIGR02427  protocat_pcaD: 3-oxoadipate enol-lactonase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.5   0.0    0.0031       4.2      47     103 ..     125     183 ..      93     203 .. 0.71
   2 !   13.5   0.0   5.6e-06    0.0077     180     222 ..     208     253 ..     199     281 .. 0.75

  Alignments for each domain:
  == domain 1    score: 4.5 bits;  conditional E-value: 0.0031
   TIGR02427  47 krGHGlSdvpegpysiedladdvlallDalgie..kaavcGlSlGGliaqaLaarrpdr 103
                  +G G+      + +  + ad +   + alg++  ++ +cG SlG   a +Laa++  +
  MMETSP1137-20121227|4482_1 125 YPGYGAATGRPSEKGCFEAADALWHHVTALGWDapHIFICGRSLGSGAAVYLAAKHVHL 183
                 556666655555555556666666666666665115679***************99654 PP

  == domain 2    score: 13.5 bits;  conditional E-value: 5.6e-06
   TIGR02427 180 irdadlr...erleeiavPtlviaGdeDgstPpelvreiadlvpga 222
                 ++ +dl+   er+++++ P+ vi G++D + P ++ r+i  + +++
  MMETSP1137-20121227|4482_1 208 LKHCDLMknaERMKHVHCPLTVIHGEKDHVVPCSHGRQIHRMASDP 253
                 566666511156677899*********************9887765 PP

>> TIGR03056  bchO_mg_che_rel: putative magnesium chelatase accessory protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    3.2   0.0     0.006       8.3      59     114 ..     122     178 ..      85     191 .. 0.72
   2 !    8.6   0.0   0.00014      0.19     202     244 ..     206     248 ..     199     265 .. 0.82

  Alignments for each domain:
  == domain 1    score: 3.2 bits;  conditional E-value: 0.006
   TIGR03056  59 apdlPGhGftratarfrfslkamaedlakllaaedls.Pda.viGhsaGaaialrlal 114
                 +++ PG G +    + +  ++  a++l++ ++a+++  P   + G s G+  a+ la 
  MMETSP1137-20121227|4482_1 122 VVEYPGYGAATGRPSEKGCFE-AADALWHHVTALGWDaPHIfICGRSLGSGAAVYLAA 178
                 678999999888888666655.59************6366524599988777776664 PP

  == domain 2    score: 8.6 bits;  conditional E-value: 0.00014
   TIGR03056 202 smmaqWelaplqralpriavPvlliageedkavppdvskeaat 244
                 +++ + +l     +++ +  P+ +i ge+d+ vp +  +++ +
  MMETSP1137-20121227|4482_1 206 RVLKHCDLMKNAERMKHVHCPLTVIHGEKDHVVPCSHGRQIHR 248
                 5677888999999*********************998877644 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (296 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        84  (0.0204778); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.29u 0.15s 00:00:00.43 Elapsed: 00:00:00.33
# Mc/sec: 1183.90
//
Query:       MMETSP1137-20121227|4483_1  [L=198]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (198 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        30  (0.00731351); expected 82.0 (0.02)
Passed bias filter:                       28  (0.00682594); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.12s 00:00:00.31 Elapsed: 00:00:00.34
# Mc/sec: 768.64
//
Query:       MMETSP1137-20121227|4484_1  [L=316]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.5e-33  114.0   0.0      2e-33  113.5   0.0    1.2  1  TIGR03840 TMPT_Se_Te: thiopurine S-methyltransferase, Se/Te detoxification family
  ------ inclusion threshold ------
      0.021   11.6   0.0      0.029   11.1   0.0    1.1  1  TIGR01964 chpXY: CO2 hydration protein


Domain annotation for each model (and alignments):
>> TIGR03840  TMPT_Se_Te: thiopurine S-methyltransferase, Se/Te detoxification family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  113.5   0.0     1e-36     2e-33       3     213 .]      29     259 ..      27     259 .. 0.82

  Alignments for each domain:
  == domain 1    score: 113.5 bits;  conditional E-value: 1e-36
   TIGR03840   3 WherWeeeqigFhqeevnpllvkylselela.......eksrvlvPLcGkslDllwLaeqghevvgveLselAveqffaenelepeveee...gelkrye.......aeeieilvgdifeltaeelg.....kvdavYDRAaLiAlPeemrerYakhlaellsegarqlLitldYdq..eelegPPFsvseeevealyaeeyeiellesedvleeepkvkkkglseleeevylle 213
                 W  +We++q+ +h+ +v+p l+ky s l  +       ++s v+ PLcG s+Dl ++a +gh+vvg+e + +A++q+f+  + e+++ ++    +l++ +         ++e++ gd++el+a++ +     ++da +DR +L+A+ ++ r  Ya+ l  l+++g r+lL+t++ d   + + gPPFs+ +e+v++l+ + ye+++l++ d   +++ +k +glsel e  yll+
  MMETSP1137-20121227|4484_1  29 WSLKWESGQTRWHLPHVHPSLAKYESLLLANeqhgdesKTSSVFFPLCGASRDLGYMALRGHHVVGAEGVGKAIDQLFQGFGEETAIARHlpgLKLRKAAtdgpagnVISLEVVEGDFLELSASRAAalglpRFDAAFDRGSLVAIQPKDRPMYAAVLDGLMAPGGRILLVTVEHDPfpNGTLGPPFSLLPEDVRTLFPN-YEVRQLQRVD---NSEDFKARGLSELFEVTYLLT 259
                 99**********************887754411111115679*************************************999988888775432222222344443355799*********9877542223378****************************************995337789***************66.9*****9954...56779*************985 PP

>> TIGR01964  chpXY: CO2 hydration protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   1.4e-05     0.029     305     355 ..     203     253 ..     196     279 .. 0.78

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 1.4e-05
   TIGR01964 305 adklpvGtaGipptllmqdmrhflpdylkeyyqkslrgeddllvqlgitfq 355
                  d++p Gt G p +ll +d+r  +p+y  +  q+    ed     l++ f+
  MMETSP1137-20121227|4484_1 203 HDPFPNGTLGPPFSLLPEDVRTLFPNYEVRQLQRVDNSEDFKARGLSELFE 253
                 59**************************99999988887765555666654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (316 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        81  (0.0197465); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.26u 0.18s 00:00:00.44 Elapsed: 00:00:00.35
# Mc/sec: 1191.67
//
Query:       MMETSP1137-20121227|4485_1  [L=408]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (408 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       155  (0.0377864); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.13s 00:00:00.42 Elapsed: 00:00:00.43
# Mc/sec: 1252.36
//
Query:       MMETSP1137-20121227|4486_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        77  (0.0187713); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.14s 00:00:00.26 Elapsed: 00:00:00.26
# Mc/sec: 269.05
//
Query:       MMETSP1137-20121227|4486_2  [L=80]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (80 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       151  (0.0368113); expected 82.0 (0.02)
Passed bias filter:                      145  (0.0353486); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.16s 00:00:00.31 Elapsed: 00:00:00.32
# Mc/sec: 329.97
//
Query:       MMETSP1137-20121227|4487_1  [L=294]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (294 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       348  (0.0848367); expected 82.0 (0.02)
Passed bias filter:                      143  (0.034861); expected 82.0 (0.02)
Passed Vit filter:                        18  (0.0043881); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.17s 00:00:00.46 Elapsed: 00:00:00.50
# Mc/sec: 776.10
//
Query:       MMETSP1137-20121227|4488_1  [L=172]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (172 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        51  (0.012433); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.15s 00:00:00.30 Elapsed: 00:00:00.42
# Mc/sec: 540.53
//
Query:       MMETSP1137-20121227|4489_1  [L=437]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (437 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       101  (0.0246221); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.17s 00:00:00.48 Elapsed: 00:00:00.35
# Mc/sec: 1647.98
//
Query:       MMETSP1137-20121227|4490_1  [L=231]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (231 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       156  (0.0380302); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.18s 00:00:00.40 Elapsed: 00:00:00.32
# Mc/sec: 952.80
//
Query:       MMETSP1137-20121227|4491_1  [L=243]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (243 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       117  (0.0285227); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.17s 00:00:00.38 Elapsed: 00:00:00.28
# Mc/sec: 1105.98
//
Query:       MMETSP1137-20121227|4492_1  [L=667]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.8e-05   20.1   0.1       0.06   10.7   0.0    2.2  2  TIGR03420 DnaA_homol_Hda: DnaA regulatory inactivator Hda
    0.00019   18.5   0.0      0.055   10.3   0.1    2.1  2  TIGR00362 DnaA: chromosomal replication initiator protein DnaA
     0.0078   13.7   0.0       0.05   11.1   0.0    1.9  2  TIGR02673 FtsE: cell division ATP-binding protein FtsE


Domain annotation for each model (and alignments):
>> TIGR03420  DnaA_homol_Hda: DnaA regulatory inactivator Hda
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.1   0.0   0.00055      0.75      24      64 ..     170     210 ..     153     235 .. 0.75
   2 !   10.7   0.0   4.4e-05      0.06      84     137 ..     322     373 ..     300     378 .. 0.87

  Alignments for each domain:
  == domain 1    score: 7.1 bits;  conditional E-value: 0.00055
   TIGR03420  24 ellaalrelaeakaerllylwGesgsGksHLLqAacaaaee 64 
                 e  +a  ++++  +   ly++G+ g Gk+ L+  + a++++
  MMETSP1137-20121227|4492_1 170 EPANAEPATLAPAKAAGLYIYGPVGAGKTMLMDMLYAHTSA 210
                 555555556677788899**************988777654 PP

  == domain 2    score: 10.7 bits;  conditional E-value: 4.4e-05
   TIGR03420  84 vlegleqaelvalDdvealagereweealfdlynrlresgrkllvageaaPael 137
                 v + + +a+l++lD++++ + ++     l  l+  l+++g +++++++++P++l
  MMETSP1137-20121227|4492_1 322 VKSIAAEASLLCLDEMQVTDVAD--AMLLRRLFEGLHSNGVRVVFTSNRPPEQL 373
                 45567899************999..899999*********************98 PP

>> TIGR00362  DnaA: chromosomal replication initiator protein DnaA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.3   0.1     4e-05     0.055     138     172 ..     185     218 ..     168     233 .. 0.80
   2 !    5.9   0.0   0.00088       1.2     201     248 ..     329     374 ..     319     380 .. 0.79

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 4e-05
   TIGR00362 138 nPlfiyGgvGlGKTHLlqAigneilkknpnakvvY 172
                   l+iyG vG GKT L+  +  ++ ++ p+ +v +
  MMETSP1137-20121227|4492_1 185 AGLYIYGPVGAGKTMLMDMLYAHTSAR-PRLRVHF 218
                 569**************9887776666.6777655 PP

  == domain 2    score: 5.9 bits;  conditional E-value: 0.00088
   TIGR00362 201 vDlLLiDDiqflagkektqeeffhtfnalleknkqivltsDrapkele 248
                 + lL +D +q+    +     +  +f+ l++++ ++v+ts r+p++l 
  MMETSP1137-20121227|4492_1 329 ASLLCLDEMQVTDVAD--AMLLRRLFEGLHSNGVRVVFTSNRPPEQLY 374
                 5666666666655553..4567789*******************9985 PP

>> TIGR02673  FtsE: cell division ATP-binding protein FtsE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.1   0.0   3.6e-05      0.05      27      54 ..     183     210 ..     173     235 .. 0.80
   2 ?   -0.2   0.0       0.1   1.4e+02     150     194 ..     323     366 ..     319     381 .. 0.73

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 3.6e-05
   TIGR02673  27 kgeflfltGasGaGkttllklllgaekp 54 
                 k+  l++ G+ GaGkt l+ +l+++ ++
  MMETSP1137-20121227|4492_1 183 KAAGLYIYGPVGAGKTMLMDMLYAHTSA 210
                 555689****************987654 PP

  == domain 2    score: -0.2 bits;  conditional E-value: 0.1
   TIGR02673 150 RaivnkPelllaDePtGnlDdelserildllkelnkrGttvivat 194
                 ++i  + +ll  De     D + +  + +l++ l+++G+ v++++
  MMETSP1137-20121227|4492_1 323 KSIAAEASLLCLDEMQ-VTDVADAMLLRRLFEGLHSNGVRVVFTS 366
                 5666666777777753.346666666779************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (667 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       158  (0.0385178); expected 82.0 (0.02)
Passed bias filter:                      142  (0.0346173); expected 82.0 (0.02)
Passed Vit filter:                        36  (0.00877621); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.54u 0.18s 00:00:00.72 Elapsed: 00:00:00.56
# Mc/sec: 1544.50
//
Query:       MMETSP1137-20121227|4493_1  [L=149]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (149 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        48  (0.0117016); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.11s 00:00:00.27 Elapsed: 00:00:00.31
# Mc/sec: 634.40
//
Query:       MMETSP1137-20121227|4495_1  [L=260]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (260 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        93  (0.0226719); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.13s 00:00:00.35 Elapsed: 00:00:00.36
# Mc/sec: 953.25
//
Query:       MMETSP1137-20121227|4496_1  [L=266]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (266 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       165  (0.0402243); expected 82.0 (0.02)
Passed bias filter:                      102  (0.0248659); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.18s 00:00:00.42 Elapsed: 00:00:00.90
# Mc/sec: 390.10
//
Query:       MMETSP1137-20121227|4497_1  [L=594]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00074   15.6   0.0     0.0017   14.4   0.0    1.5  1  TIGR04075 bacter_Pnkp: polynucleotide kinase-phosphatase


Domain annotation for each model (and alignments):
>> TIGR04075  bacter_Pnkp: polynucleotide kinase-phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.0     4e-07    0.0017     173     268 ..      40     122 ..       4     128 .. 0.68

  Alignments for each domain:
  == domain 1    score: 14.4 bits;  conditional E-value: 4e-07
   TIGR04075 173 ndkrdekGPfdiiGdvhGCldeleelleklGyeveeeeegkavevthpegrkavflGdlvdrGpdspdvlrlvmsm.vk.agaalcvpGnheekllrk 268
                 ++ ++   P  i Gd+hG + +l+el++ +G  v ++              + +f+Gd+vdrG  s++++ l  ++ v+  ++   ++Gnhe++ + +
  MMETSP1137-20121227|4497_1  40 SNVQRVDAPVTICGDIHGQFYDLKELFK-VGGDVPDT--------------NYLFMGDFVDRGFYSVETFLLLLALkVRyPDRITLIRGNHESRQITQ 122
                 344556789***************9975.45444433..............359************998766554425515677789*****986655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (594 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        73  (0.0177962); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.16s 00:00:00.56 Elapsed: 00:00:00.51
# Mc/sec: 1537.28
//
Query:       MMETSP1137-20121227|4499_1  [L=199]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.4e-53  178.1   0.0      4e-53  177.4   0.0    1.3  1  TIGR01077 L13_A_E: ribosomal protein L13
    4.6e-10   37.3   0.3    4.4e-08   30.9   0.0    2.6  2  TIGR01066 rplM_bact: ribosomal protein L13


Domain annotation for each model (and alignments):
>> TIGR01077  L13_A_E: ribosomal protein L13
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  177.4   0.0   1.9e-56     4e-53       1     140 [.       7     148 ..       7     149 .. 0.99

  Alignments for each domain:
  == domain 1    score: 177.4 bits;  conditional E-value: 1.9e-56
   TIGR01077   1 vvidaeglilGrLaskvakrlLeGekvvvvnaekivisGdkevvvekYkeklekkkktnprrgPffprapdrilkrtvrgmlpkkkarGrealerlkvyvGiPkeldkkklvkveeal.vsrlskt.kyvtlgelakelGak 140
                 vvid + ++lGrLas++ak+lL+G++vv v++e i+isG +++++ kY +kl+k+++tnp +gP+++rap ri++r +rgm+p+k++rG+ a+erlk ++GiP+++   k+++v++a  ++rl++  ++  lg+++ e+G+k
  MMETSP1137-20121227|4499_1   7 VVIDCKNHLLGRLASIIAKELLSGQRVVCVRCEDINISGSFYRNKLKYLDKLRKRTNTNPAHGPYHFRAPARIFHRCIRGMIPHKTHRGKCAMERLKCFEGIPEQYASVKRMVVPDAFrITRLKPGrRFCVLGRISDEIGWK 148
                 69*******************************************************************************************************************99*******9**************9 PP

>> TIGR01066  rplM_bact: ribosomal protein L13
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.9   0.0   2.2e-11   4.4e-08      13     135 ..       5     116 ..       2     121 .. 0.82
   2 ?   -2.2   0.0      0.36   7.3e+02      21      77 ..     160     171 ..     149     185 .. 0.50

  Alignments for each domain:
  == domain 1    score: 30.9 bits;  conditional E-value: 2.2e-11
   TIGR01066  13 kwyvvdaagktLGrlasevakllrGkhkatytPnvdvGDyviviNaekvkltgkkleqkvyyrhsgyvgglkektlkellekkpekvlekAvkgmlp.knklgrkllkklkvykgsehpheaqk 135
                 k +v+d++++ LGrlas +ak l              G  v+ + +e+++++g+  ++k+ y    +     + +      ++p+++ +  ++gm+p k++ g+  +++lk ++g   ++++ k
  MMETSP1137-20121227|4499_1   5 KLVVIDCKNHLLGRLASIIAKELL------------SGQRVVCVRCEDINISGSFYRNKLKYLDKLRKRTNTNPAHGPYHFRAPARIFHRCIRGMIPhKTHRGKCAMERLKCFEGIPEQYASVK 116
                 6789****************9765............5778**************999998777755555555555556666****************55778999*********9888777665 PP

  == domain 2    score: -2.2 bits;  conditional E-value: 0.36
   TIGR01066  21 gktLGrlasevakllrGkhkatytPnvdvGDyviviNaekvkltgkkleqkvyyrhs 77 
                                                               k++ kvy++  
  MMETSP1137-20121227|4499_1 160 R---------------------------------------------KEKGKVYWETK 171
                 3.............................................33334443322 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (199 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       114  (0.0277913); expected 82.0 (0.02)
Passed bias filter:                      103  (0.0251097); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.22u 0.16s 00:00:00.38 Elapsed: 00:00:00.28
# Mc/sec: 905.72
//
Query:       MMETSP1137-20121227|4500_1  [L=394]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      2e-28   96.9   0.3    3.1e-28   96.3   0.2    1.3  1  TIGR01071 rplO_bact: ribosomal protein L15


Domain annotation for each model (and alignments):
>> TIGR01071  rplO_bact: ribosomal protein L15
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.3   0.2   7.6e-32   3.1e-28       3     143 ..     156     306 ..     154     307 .. 0.91

  Alignments for each domain:
  == domain 1    score: 96.3 bits;  conditional E-value: 7.6e-32
   TIGR01071   3 eeLkpakgakkkkkrvgRGigsGkGktsgrGqkGqkaRsggkvrlgFEGGqtPlyrrlPkrgfsnklkkelevvnvekleklfkdg.......evvtlekLlekkl..ikkknklvKvlgkgk..lekkltvkaekvsksakakiekaggsv 143
                 + Lk++ ga+k+ krvgRG+gsG+Gk +grGqkG+k+R+g++  l   GG tP+++ +Pkrgf +  k+e+  + v++l+++   g         +t+ ++ + +l  i+ +++ vK+l++g+  ++ +++++++ +sk a ++iekagg++
  MMETSP1137-20121227|4500_1 156 HVLKDNYGARKAPKRVGRGPGSGRGKRCGRGQKGKKSRAGNHGYLKIAGGNTPMWKLVPKRGFYKP-KREFLLLSVGDLKEALVCGrlslptdGPLTIRHFFQSRLltIRGRHAGVKLLARGHetFDFPINIEVQDASKLAIEAIEKAGGKI 306
                 679***********************************************************9988.899***********9998888999887899999988887224556666******9988999**********************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (394 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        68  (0.0165773); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.29u 0.17s 00:00:00.46 Elapsed: 00:00:00.30
# Mc/sec: 1733.46
//
Query:       MMETSP1137-20121227|4501_1  [L=41]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (41 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        16  (0.00390054); expected 82.0 (0.02)
Passed bias filter:                       16  (0.00390054); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.16s 00:00:00.27 Elapsed: 00:00:00.26
# Mc/sec: 208.14
//
Query:       MMETSP1137-20121227|4502_1  [L=191]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.7e-07   28.2   0.1    1.8e-07   28.1   0.1    1.1  1  TIGR02766 crypt_chrom_pln: cryptochrome, plant family
     0.0019   14.9   0.0     0.0032   14.2   0.0    1.4  1  TIGR02765 crypto_DASH: cryptochrome, DASH family


Domain annotation for each model (and alignments):
>> TIGR02766  crypt_chrom_pln: cryptochrome, plant family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.1   0.1   8.8e-11   1.8e-07       1      94 [.       2      97 ..       2     145 .. 0.86

  Alignments for each domain:
  == domain 1    score: 28.1 bits;  conditional E-value: 8.8e-11
   TIGR02766  1 ktvvwfrrdlrvednpalaaaareg..evlpvfvwapeeegqfypgrvsrwwlkqslahldqslkslgaklvlkrsed....tvaalldvvkstgatklv 94
                ++v+w++  lr+ dnpal  a+++    +  vfvw     gq  p  +s  +   + + ld++l++lg +lv+ +s+d    + +a+ ++v++tga   v
  MMETSP1137-20121227|4502_1  2 RAVLWLQCSLRLADNPALLRAVEQAadGLAVVFVWRH---GQ-RPSTASAVFECAAAHSLDKALHKLGNRLVVLHSDDddtkAAQAVAQIVHKTGAQLAV 97
                5799**************999987643466789**75...54.6999*****9*******************9998653333678999*******97655 PP

>> TIGR02765  crypto_DASH: cryptochrome, DASH family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.0   1.5e-06    0.0032       3      96 ..       3      92 ..       1     140 [. 0.67

  Alignments for each domain:
  == domain 1    score: 14.2 bits;  conditional E-value: 1.5e-06
   TIGR02765  3 vlllfrndLRleDnellakasskee.elvpvyvfdarqiklsavaglaklGkarakFlaesvadLktsLkklGsdLlvrag.....kpedvlkelvkelk 96
                ++l+++  LRl Dn++l +a ++++  l  v+v+ + q   +          a a F  ++   L+++L+klG++L+v++      k  ++++++v+++ 
  MMETSP1137-20121227|4502_1  3 AVLWLQCSLRLADNPALLRAVEQAAdGLAVVFVWRHGQRPST----------ASAVFECAAAHSLDKALHKLGNRLVVLHSddddtKAAQAVAQIVHKTG 92
                689*************99998776537888888876665533..........345677777788999999999999998751111134455555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (191 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       177  (0.0431497); expected 82.0 (0.02)
Passed bias filter:                      162  (0.0394929); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.23u 0.16s 00:00:00.39 Elapsed: 00:00:00.41
# Mc/sec: 614.88
//
Query:       MMETSP1137-20121227|4503_1  [L=91]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (91 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        37  (0.00901999); expected 82.0 (0.02)
Passed bias filter:                       37  (0.00901999); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.17s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 428.96
//
Query:       MMETSP1137-20121227|4504_1  [L=844]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-07   29.1   4.5       0.63    8.2   0.0    6.0  7  TIGR00756 PPR: pentatricopeptide repeat domain


Domain annotation for each model (and alignments):
>> TIGR00756  PPR: pentatricopeptide repeat domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0      0.63   2.6e+03      13      25 ..     119     131 ..     115     133 .. 0.83
   2 !    8.2   0.0   0.00015      0.63       5      33 ..     288     316 ..     286     316 .. 0.94
   3 !    5.8   0.1   0.00088       3.6       5      25 ..     363     383 ..     362     387 .. 0.90
   4 ?   -1.8   0.0      0.24   9.8e+02       9      27 ..     456     474 ..     454     482 .. 0.85
   5 !    4.7   0.0     0.002       8.4       4      25 ..     487     508 ..     485     514 .. 0.89
   6 ?   -2.9   0.0       0.5   2.1e+03       6      23 ..     523     540 ..     523     541 .. 0.83
   7 !    6.3   0.0   0.00061       2.5       6      30 ..     606     630 ..     604     633 .. 0.88

  Alignments for each domain:
  == domain 1    score: -3.2 bits;  conditional E-value: 0.63
   TIGR00756  13 agrveeAlelfde 25 
                  g+ + A+el+++
  MMETSP1137-20121227|4504_1 119 LGDSKLAVELYHS 131
                 689999*****96 PP

  == domain 2    score: 8.2 bits;  conditional E-value: 0.00015
   TIGR00756   5 tlisglckagrveeAlelfdeMkergivP 33 
                  li++l    r eeA+ ++++  + g++P
  MMETSP1137-20121227|4504_1 288 QLIDSLIAGERHEEAFAVWERASKGGFRP 316
                 69*********************999988 PP

  == domain 3    score: 5.8 bits;  conditional E-value: 0.00088
   TIGR00756   5 tlisglckagrveeAlelfde 25 
                 +++ +++  gr++eAl ++ e
  MMETSP1137-20121227|4504_1 363 AMVGACAACGRLDEALVFYSE 383
                 6999************99987 PP

  == domain 4    score: -1.8 bits;  conditional E-value: 0.24
   TIGR00756   9 glckagrveeAlelfdeMk 27 
                 ++++ g+   A +l+de +
  MMETSP1137-20121227|4504_1 456 ACAHVGDGGRAARLLDEAM 474
                 7999999999*99999976 PP

  == domain 5    score: 4.7 bits;  conditional E-value: 0.002
   TIGR00756   4 ntlisglckagrveeAlelfde 25 
                 ++++++++ +g ++ A++l+++
  MMETSP1137-20121227|4504_1 487 SIVVRACASSGLMRSAFRLLQR 508
                 689****************986 PP

  == domain 6    score: -2.9 bits;  conditional E-value: 0.5
   TIGR00756   6 lisglckagrveeAlelf 23 
                 ++++++++ +   Al++ 
  MMETSP1137-20121227|4504_1 523 MLKCCAESHEGVVALQVH 540
                 899**9999888888875 PP

  == domain 7    score: 6.3 bits;  conditional E-value: 0.00061
   TIGR00756   6 lisglckagrveeAlelfdeMkerg 30 
                 l+ ++++ gr ++Al l+++ ++rg
  MMETSP1137-20121227|4504_1 606 LVLAFARVGRADDALALLRDAESRG 630
                 56689***************99998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (844 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        96  (0.0234032); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.16s 00:00:00.67 Elapsed: 00:00:00.39
# Mc/sec: 2856.38
//
Query:       MMETSP1137-20121227|4505_1  [L=123]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.036   12.2   0.1      0.049   11.8   0.1    1.2  1  TIGR02508 type_III_yscG: type III secretion protein, YscG family


Domain annotation for each model (and alignments):
>> TIGR02508  type_III_yscG: type III secretion protein, YscG family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.1   1.2e-05     0.049       9      74 ..       1      67 [.       1      72 [. 0.82

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 1.2e-05
   TIGR02508  9 LaeiaLvgtGhhchqeantiadwLeeaeeseeavvlirlssLmnrGdYeea..lqlgeelcyPdlepw 74
                L e aL+   +hc  e    a+++ e +  + av+  +l   +n+ + +++      +e c P++e +
  MMETSP1137-20121227|4505_1  1 LMEAALAQVDKHCSAELGAFANCVDERPR-TWAVECAQLKQSLNQCAAKHStiVTGVKERCKPEIEQY 67
                6789**********************999.88999999988889887655411445678999999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (123 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        89  (0.0216967); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.17u 0.18s 00:00:00.35 Elapsed: 00:00:00.56
# Mc/sec: 284.82
//
Query:       MMETSP1137-20121227|4506_1  [L=313]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.8e-18   62.9   3.7    1.8e-17   61.3   2.7    1.6  2  TIGR02858 spore_III_AA: stage III sporulation protein AA
      3e-07   27.8   2.5    5.9e-07   26.8   1.7    1.6  1  TIGR03819 heli_sec_ATPase: helicase/secretion neighborhood ATPase
    0.00011   19.2   0.1    0.00017   18.5   0.1    1.2  1  TIGR02788 VirB11: P-type DNA transfer ATPase VirB11
    0.00046   16.7   0.0    0.00076   16.0   0.0    1.3  1  TIGR00764 lon_rel: putative ATP-dependent protease
    0.00062   16.9   2.5     0.0016   15.6   0.2    2.3  3  TIGR02782 TrbB_P: P-type conjugative transfer ATPase TrbB
     0.0013   14.9   0.1     0.0018   14.5   0.0    1.2  1  TIGR03925 T7SS_EccC_b: type VII secretion protein EccCb
     0.0017   16.0   0.1     0.0032   15.0   0.0    1.4  1  TIGR03771 anch_rpt_ABC: anchored repeat-type ABC transporter, ATP-binding subunit
     0.0031   14.6   0.1     0.0046   14.1   0.1    1.2  1  TIGR02142 modC_ABC: molybdate ABC transporter, ATP-binding protein
     0.0032   15.0   0.0     0.0056   14.2   0.0    1.3  1  TIGR01189 ccmA: heme ABC exporter, ATP-binding protein CcmA
      0.004   14.2   0.4     0.0076   13.3   0.2    1.5  1  TIGR02030 BchI-ChlI: magnesium chelatase ATPase subunit I
      0.004   13.7   0.0     0.0064   13.1   0.0    1.3  1  TIGR03689 pup_AAA: proteasome ATPase
     0.0042   13.4   0.1     0.0056   13.0   0.0    1.2  1  TIGR02442 Cob-chelat-sub: cobaltochelatase subunit
     0.0055   12.1   0.0     0.0064   11.9   0.0    1.1  1  TIGR00956 3a01205: pleiotropic drug resistance family protein
     0.0076   12.4   0.1      0.011   11.8   0.1    1.2  1  TIGR03375 type_I_sec_LssB: type I secretion system ATPase
     0.0081   11.9   0.1      0.012   11.4   0.0    1.2  1  TIGR01448 recD_rel: helicase, RecD/TraA family
     0.0084   13.4   0.0      0.018   12.3   0.0    1.5  1  TIGR03410 urea_trans_UrtE: urea ABC transporter, ATP-binding protein UrtE
     0.0089   13.3   0.0      0.015   12.5   0.0    1.4  1  TIGR02315 ABC_phnC: phosphonate ABC transporter, ATP-binding protein
     0.0098   12.7   0.1      0.017   11.9   0.0    1.3  1  TIGR02857 CydD: thiol reductant ABC exporter, CydD subunit
  ------ inclusion threshold ------
      0.011   13.1   0.0       0.02   12.2   0.0    1.4  1  TIGR03420 DnaA_homol_Hda: DnaA regulatory inactivator Hda
      0.011   12.3   0.0      0.016   11.8   0.0    1.1  1  TIGR00416 sms: DNA repair protein RadA
      0.013   12.8   0.1      0.088   10.1   0.0    2.2  2  TIGR01166 cbiO: cobalt ABC transporter, ATP-binding protein
      0.013   11.9   0.0      0.019   11.4   0.0    1.2  1  TIGR00368 TIGR00368: Mg chelatase-like protein
      0.014   12.6   0.1       0.03   11.6   0.0    1.6  1  TIGR03015 pepcterm_ATPase: putative secretion ATPase, PEP-CTERM locus subfamily
      0.016   12.6   0.1      0.031   11.6   0.0    1.5  1  TIGR00968 3a0106s01: sulfate ABC transporter, ATP-binding protein
       0.02   12.4   0.1       0.56    7.7   0.0    2.2  2  TIGR03881 KaiC_arch_4: KaiC domain protein, PAE1156 family


Domain annotation for each model (and alignments):
>> TIGR02858  spore_III_AA: stage III sporulation protein AA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0       1.8   2.9e+02       9      41 ..      10      43 ..       8      48 .. 0.68
   2 !   61.3   2.7   1.1e-19   1.8e-17      63     246 ..      49     222 ..      25     228 .. 0.86

  Alignments for each domain:
  == domain 1    score: -1.7 bits;  conditional E-value: 1.8
   TIGR02858  9 rPlelvldeeevfvtdsdy.iltkedvkailqkl 41
                rP   + ++e+v+++d++  ++t++d++ + +++
  MMETSP1137-20121227|4506_1 10 RPTCALSNGERVYLSDNASqVTTEDDIEFVKKQV 43
                6777788899999997665155566666666655 PP

  == domain 2    score: 61.3 bits;  conditional E-value: 1.1e-19
   TIGR02858  63 GhrvGlaGkvvledkkvktiknvaslniriarevlgaaeklleylvknnrvlntliisPPqsGkttllrdlaralstGisklglkglkvgivderseiaacvkGvPqldvGlrtdvlda..CpkaeGlmllirslsPdvivvdeiGreedveallealnaGvsviatahgkdledlkkrpvlkell 246
                  hr G+ G        ++   + a+l ir+ r  ++ a+ +++ l+  ++ +++l+++ P sGktt++r  a  l++           + ivd   eia+    +P + +G    ++      ++  ++  ++  +P  +v+deiGr ++v+a l++ + Gv ++a+ahg +l dl k p+l+ ll
  MMETSP1137-20121227|4506_1  49 DHRAGMDGTLHRISAIINRDGRTAGLTIRMGRSFTNNADMMVDTLL--GTRQSVLVLGEPGSGKTTIIRAAAALLAER--------ETTIIVDTSNEIAGD-GIIPHRCIGRSRRMMVPslAAQSAVMVECVQNHTPSAMVIDEIGRGQEVSAALTVKRRGVRMLASAHG-TLRDLLKNPQLNGLL 222
                 58999999988888888888999**********************9..78899*****************99999983........4688*********95.348******75555555005555556667**************************************9.599*******99886 PP

>> TIGR03819  heli_sec_ATPase: helicase/secretion neighborhood ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.8   1.7   3.6e-09   5.9e-07     157     268 ..      76     189 ..      53     240 .. 0.77

  Alignments for each domain:
  == domain 1    score: 26.8 bits;  conditional E-value: 3.6e-09
   TIGR03819 157 lvaagaiapevaelleaivaarlallvsGgtGsGkttLLsalLalvaedeRivlvedaaelrpdh..phvvkleaReanveGaGavsltdLvrqaLRmRPDRivvGev.RGaevv 268
                 +   ++++++++ ++++++ +r ++lv G  GsGktt++ a  al+ae+e  ++v+ ++e++ d   ph    ++R+  v    a +   +v       P  +v+ e+ RG+ev 
  MMETSP1137-20121227|4506_1  76 IRMGRSFTNNADMMVDTLLGTRQSVLVLGEPGSGKTTIIRAAAALLAERETTIIVDTSNEIAGDGiiPHRCIGRSRRMMVPSLAA-QSAVMVECVQNHTPSAMVIDEIgRGQEVS 189
                 4556789999***************************************************876322665555555544433322.22223333333456666666665666665 PP

>> TIGR02788  VirB11: P-type DNA transfer ATPase VirB11
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.1   1.1e-06   0.00017     140     184 ..      93     137 ..      80     143 .. 0.88

  Alignments for each domain:
  == domain 1    score: 18.5 bits;  conditional E-value: 1.1e-06
   TIGR02788 140 aiaakkniiisGgtgsgKTTflkalvkliPkeeRlitiedteElk 184
                  + +++++++ G +gsgKTT+++a   l+ + e  i ++ ++E++
  MMETSP1137-20121227|4506_1  93 LLGTRQSVLVLGEPGSGKTTIIRAAAALLAERETTIIVDTSNEIA 137
                 56689*********************************9999985 PP

>> TIGR00764  lon_rel: putative ATP-dependent protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0   4.7e-06   0.00076      29      69 ..      89     129 ..      83     154 .. 0.82

  Alignments for each domain:
  == domain 1    score: 16.0 bits;  conditional E-value: 4.7e-06
   TIGR00764  29 vikkaakqkrnvlliGePGvGksmlakamaellpkeeledi 69 
                 ++ +    ++ vl++GePG Gk+ + +a a ll++ e + i
  MMETSP1137-20121227|4506_1  89 MVDTLLGTRQSVLVLGEPGSGKTTIIRAAAALLAERETTII 129
                 55666678999***********************9987644 PP

>> TIGR02782  TrbB_P: P-type conjugative transfer ATPase TrbB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.2   9.7e-06    0.0016     125     178 ..      86     136 ..      79     140 .. 0.76
   2 ?   -1.0   0.0       1.1   1.8e+02      21      67 ..     163     208 ..     145     223 .. 0.68
   3 ?   -0.1   0.0      0.58        95     232     296 ..     220     286 ..     206     293 .. 0.71

  Alignments for each domain:
  == domain 1    score: 15.6 bits;  conditional E-value: 9.7e-06
   TIGR02782 125 qadvlreavaarknilvvGGtgsGkttLanallaeiaksapddrvviiedtael 178
                 +  ++  ++ +r+ +lv G  gsGktt++ a  a +a++   +  +i++  +e+
  MMETSP1137-20121227|4506_1  86 ADMMVDTLLGTRQSVLVLGEPGSGKTTIIRAAAALLAER---ETTIIVDTSNEI 136
                 334455567789******************999999888...555666666666 PP

  == domain 2    score: -1.0 bits;  conditional E-value: 1.1
   TIGR02782  21 akvveimlnp.dgklfverlgeglealgkvsaakaeaiielvadllgt 67 
                 a +ve + n   + + ++++g+g+e++  + +++  + ++++a+++gt
  MMETSP1137-20121227|4506_1 163 AVMVECVQNHtPSAMVIDEIGRGQEVSAALTVKR--RGVRMLASAHGT 208
                 4567777775157788999999999999888765..456777777766 PP

  == domain 3    score: -0.1 bits;  conditional E-value: 0.58
   TIGR02782 232 GhpGGiatihannakaaLrrleqliaevsksvaqeliaeavdlvvvier..teegrrvkeii.kvkgl 296
                 G  GGi+t+  ++  a  + +e+   +vsk+  ++  a + ++vv + r   ++ r v++++  v+++
  MMETSP1137-20121227|4506_1 220 GLLGGISTVTLGDDLAKKTAVERK-RNVSKTLSERASAPTFEVVVEVCRgePHKWRVVHDVAaAVDDI 286
                 777999999988887777777764.6789999999999999999999885334556677775245555 PP

>> TIGR03925  T7SS_EccC_b: type VII secretion protein EccCb
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.0   1.1e-05    0.0018     338     390 ..      72     126 ..      57     179 .. 0.71

  Alignments for each domain:
  == domain 1    score: 14.5 bits;  conditional E-value: 1.1e-05
   TIGR03925 338 erervllGleesdlapvald..faeephllvlGdsesGktallraiaeevverns 390
                 + +++ +G + ++ a +++d  + +++ +lvlG+ +sGkt+++ra a+ ++er +
  MMETSP1137-20121227|4506_1  72 AGLTIRMGRSFTNNADMMVDtlLGTRQSVLVLGEPGSGKTTIIRAAAALLAERET 126
                 5556667777777777777755667788888888888888888888777766443 PP

>> TIGR03771  anch_rpt_ABC: anchored repeat-type ABC transporter, ATP-binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0     2e-05    0.0032       9      47 ..     100     138 ..      94     147 .. 0.83

  Alignments for each domain:
  == domain 1    score: 15.0 bits;  conditional E-value: 2e-05
   TIGR03771   9 lgllGpnGaGkttllrailglikvakGsvkvagkssrkg 47 
                 + +lG  G+Gktt++ra  +l+++++ ++ v++ +   g
  MMETSP1137-20121227|4506_1 100 VLVLGEPGSGKTTIIRAAAALLAERETTIIVDTSNEIAG 138
                 5579***************************99755444 PP

>> TIGR02142  modC_ABC: molybdate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.1   2.8e-05    0.0046      13      58 ..      87     132 ..      74     143 .. 0.84

  Alignments for each domain:
  == domain 1    score: 14.1 bits;  conditional E-value: 2.8e-05
   TIGR02142  13 eLdvdlelpgkgvtalFGrsGsGktslirliaGLtrpdegeivldg 58 
                  + vd+ l +++ + + G+ GsGkt++ir+ a L+  +e+ i +d 
  MMETSP1137-20121227|4506_1  87 DMMVDTLLGTRQSVLVLGEPGSGKTTIIRAAAALLAERETTIIVDT 132
                 5667777888888999************************999985 PP

>> TIGR01189  ccmA: heme ABC exporter, ATP-binding protein CcmA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.0   3.4e-05    0.0056      23      62 ..      94     133 ..      81     145 .. 0.85

  Alignments for each domain:
  == domain 1    score: 14.2 bits;  conditional E-value: 3.4e-05
   TIGR01189  23 laaGealvveGpnGiGKttLLRilaGLlkpesGevelndk 62 
                 l + + + v G+ G+GKtt++R  a Ll   + ++ ++ +
  MMETSP1137-20121227|4506_1  94 LGTRQSVLVLGEPGSGKTTIIRAAAALLAERETTIIVDTS 133
                 55567899************************99999854 PP

>> TIGR02030  BchI-ChlI: magnesium chelatase ATPase subunit I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   0.2   4.6e-05    0.0076      26      53 ..      98     125 ..      84     167 .. 0.85

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 4.6e-05
   TIGR02030  26 GGvlvlGdrGtgkstavralaallpeik 53 
                   vlvlG+ G+gk+t +ra aall e +
  MMETSP1137-20121227|4506_1  98 QSVLVLGEPGSGKTTIIRAAAALLAERE 125
                 479*********************8865 PP

>> TIGR03689  pup_AAA: proteasome ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.1   0.0   3.9e-05    0.0064     213     245 ..      94     126 ..      81     138 .. 0.82

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 3.9e-05
   TIGR03689 213 lkpPkGvllyGPPGcGktliakavanslaekva 245
                 l + + vl+ G PG+Gkt i +a a+ lae+ +
  MMETSP1137-20121227|4506_1  94 LGTRQSVLVLGEPGSGKTTIIRAAAALLAERET 126
                 666789***********************9875 PP

>> TIGR02442  Cob-chelat-sub: cobaltochelatase subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   0.0   3.4e-05    0.0056      27      55 ..      99     127 ..      88     174 .. 0.82

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 3.4e-05
   TIGR02442  27 gvlirGekGtaKstaaRaLaallpdievv 55 
                 +vl+ Ge G++K+t++Ra aall+++e+ 
  MMETSP1137-20121227|4506_1  99 SVLVLGEPGSGKTTIIRAAAALLAERETT 127
                 8**********************998765 PP

>> TIGR00956  3a01205: pleiotropic drug resistance family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.9   0.0   3.9e-05    0.0064      80     114 ..      90     124 ..      26     156 .. 0.80

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 3.9e-05
   TIGR00956  80 vdglikpgelvvvLGrPgsGcstlLksiasktegf 114
                 vd+l+ + + v+vLG+PgsG++t++++ a+ + + 
  MMETSP1137-20121227|4506_1  90 VDTLLGTRQSVLVLGEPGSGKTTIIRAAAALLAER 124
                 7888889999****************998866544 PP

>> TIGR03375  type_I_sec_LssB: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.8   0.1   6.9e-05     0.011     496     529 ..     100     133 ..      90     139 .. 0.92

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 6.9e-05
   TIGR03375 496 vaiiGriGsGKstllklllglyepteGsvlldgv 529
                 v ++G+ GsGK+t+ +  + l++ +e ++++d  
  MMETSP1137-20121227|4506_1 100 VLVLGEPGSGKTTIIRAAAALLAERETTIIVDTS 133
                 779****************************975 PP

>> TIGR01448  recD_rel: helicase, RecD/TraA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.4   0.0   7.4e-05     0.012     341     366 ..     100     125 ..      65     134 .. 0.78

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 7.4e-05
   TIGR01448 341 viltGGPGtGKtTvtkaiielaeele 366
                 v++ G PG GKtT+++a ++l +e e
  MMETSP1137-20121227|4506_1 100 VLVLGEPGSGKTTIIRAAAALLAERE 125
                 345699**************999987 PP

>> TIGR03410  urea_trans_UrtE: urea ABC transporter, ATP-binding protein UrtE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.3   0.0   0.00011     0.018      26      61 ..      97     132 ..      80     144 .. 0.86

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 0.00011
   TIGR03410  26 gevvavlGrngvGkttllkalvgllkvksGeieleg 61 
                  + v vlG  g Gktt+++a+ +ll +++ +i ++ 
  MMETSP1137-20121227|4506_1  97 RQSVLVLGEPGSGKTTIIRAAAALLAERETTIIVDT 132
                 56789*********************9999998875 PP

>> TIGR02315  ABC_phnC: phosphonate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.5   0.0   9.4e-05     0.015      29      64 ..      98     133 ..      76     153 .. 0.82

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 9.4e-05
   TIGR02315  29 elvaviGlsGaGkstllrsinrlveissgsillegk 64 
                 + v v+G+ G+Gk+t++r+   l  + +++i ++ +
  MMETSP1137-20121227|4506_1  98 QSVLVLGEPGSGKTTIIRAAAALLAERETTIIVDTS 133
                 45789******************9999999988764 PP

>> TIGR02857  CydD: thiol reductant ABC exporter, CydD subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.9   0.0    0.0001     0.017     340     384 ..      89     133 ..      70     144 .. 0.81

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 0.0001
   TIGR02857 340 evsltvepgelvalvGaSGaGKstllklllgfvepteGailvnga 384
                  v+  +  ++ v ++G+ G+GK+t++++ + ++   e +i v+ +
  MMETSP1137-20121227|4506_1  89 MVDTLLGTRQSVLVLGEPGSGKTTIIRAAAALLAERETTIIVDTS 133
                 56666778899**********************999999998654 PP

>> TIGR03420  DnaA_homol_Hda: DnaA regulatory inactivator Hda
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   0.00012      0.02      37      74 ..      96     132 ..      83     140 .. 0.82

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 0.00012
   TIGR03420  37 aerllylwGesgsGksHLLqAacaaaeeagksaiylpl 74 
                 +++++ + Ge+gsGk+ +++Aa+a ++e++ ++i ++ 
  MMETSP1137-20121227|4506_1  96 TRQSVLVLGEPGSGKTTIIRAAAALLAERE-TTIIVDT 132
                 5678999*****************999885.5555665 PP

>> TIGR00416  sms: DNA repair protein RadA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   9.7e-05     0.016      96     179 ..      99     182 ..      82     193 .. 0.73

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 9.7e-05
   TIGR00416  96 liliGGdPGiGkstlllqvaaqlaknskkvlyvsgeeslqqvklrasrlglvedelklls.etnleqilaeieelkpkvvvidsi 179
                  +l+ G+PG Gk+t++   aa la+++++++  +++e      +  +r    +  +++ s   +  ++++ +++  p+++vid i
  MMETSP1137-20121227|4506_1  99 SVLVLGEPGSGKTTIIRAAAALLAERETTIIVDTSNEIAGDGII-PHRCIGRSRRMMVPSlAAQSAVMVECVQNHTPSAMVIDEI 182
                 58999*********************877776666665555444.4444334444444441334455667788889999999987 PP

>> TIGR01166  cbiO: cobalt ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.0      0.95   1.6e+02     119     143 ..       6      31 ..       3      70 .. 0.66
   2 ?   10.1   0.0   0.00054     0.088      17      53 ..      96     132 ..      82     140 .. 0.83

  Alignments for each domain:
  == domain 1    score: -0.5 bits;  conditional E-value: 0.95
   TIGR01166 119 gleerpthllsgGekkrva.iagava 143
                 ++ +rpt  ls+Ge+  ++  a+ v+
  MMETSP1137-20121227|4506_1   6 DYGRRPTCALSNGERVYLSdNASQVT 31 
                 78889999999999865542344454 PP

  == domain 2    score: 10.1 bits;  conditional E-value: 0.00054
   TIGR01166  17 rgevlallGanGaGkstlllhlnGllrPksGkvlldG 53 
                   +++ +lG+ G+Gk+t+++  + ll  ++ ++++d 
  MMETSP1137-20121227|4506_1  96 TRQSVLVLGEPGSGKTTIIRAAAALLAERETTIIVDT 132
                 45678899******************99999999885 PP

>> TIGR00368  TIGR00368: Mg chelatase-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00011     0.019     212     249 ..      98     135 ..      85     180 .. 0.76

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 0.00011
   TIGR00368 212 hnllllGPPGsGktllakrlqgllPeltneealetarv 249
                   +l+lG PGsGkt +++ + +ll e +   +++t++ 
  MMETSP1137-20121227|4506_1  98 QSVLVLGEPGSGKTTIIRAAAALLAERETTIIVDTSNE 135
                 56899*******************99888888887754 PP

>> TIGR03015  pepcterm_ATPase: putative secretion ATPase, PEP-CTERM locus subfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   0.00018      0.03      46     131 ..     100     181 ..      82     218 .. 0.63

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 0.00018
   TIGR03015  46 ilitGevGaGkttlvrnllkkleaekvvlaklvntk..vdaedllrmvaadfGletegrdkvallreleeflieqaaegkrallvvde 131
                 +l+ Ge G+Gktt++r     l + ++++  +v+t+  +  + ++        +  + r  v  l +  + ++e++++ + + +v+de
  MMETSP1137-20121227|4506_1 100 VLVLGEPGSGKTTIIRAAAALLAERETTI--IVDTSneIAGDGII----PHRCIGRSRRMMVPSLAAQSAVMVECVQNHTPSAMVIDE 181
                 7899************9877666444444..33333003333332....223344444555555666666666666666666666666 PP

>> TIGR00968  3a0106s01: sulfate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   0.00019     0.031      20      61 ..      91     132 ..      75     148 .. 0.81

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 0.00019
   TIGR00968  20 dlevktGslvallGpsGsGkstllrviaGlekpdsGrilleG 61 
                 d  + t + v +lG  GsGk+t++r+ a l  + + +i+++ 
  MMETSP1137-20121227|4506_1  91 DTLLGTRQSVLVLGEPGSGKTTIIRAAAALLAERETTIIVDT 132
                 445556678899*****************9988888888765 PP

>> TIGR03881  KaiC_arch_4: KaiC domain protein, PAE1156 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.0      0.14        23      49      79 ..      24      54 ..      15      76 .. 0.80
   2 ?    7.7   0.0    0.0034      0.56      21      60 ..      97     135 ..      77     142 .. 0.80

  Alignments for each domain:
  == domain 1    score: 2.4 bits;  conditional E-value: 0.14
   TIGR03881 49 gdkviyvtteesresivrqarqfgldlekfk 79
                 d++  vtte++ e + +q   fg d +  +
  MMETSP1137-20121227|4506_1 24 SDNASQVTTEDDIEFVKKQVGDFGSDHRAGM 54
                577888******************9987766 PP

  == domain 2    score: 7.7 bits;  conditional E-value: 0.0034
   TIGR03881  21 GffvavvGePGvGktilclhfiakGlregdkviyvttees 60 
                    v v GePG Gkt + +  +a+ l e +++i v t ++
  MMETSP1137-20121227|4506_1  97 RQSVLVLGEPGSGKTTI-IRAAAALLAERETTIIVDTSNE 135
                 567899********976.7788888999999999988765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (313 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       321  (0.0782545); expected 82.0 (0.02)
Passed bias filter:                      271  (0.0660653); expected 82.0 (0.02)
Passed Vit filter:                       102  (0.0248659); expected 4.1 (0.001)
Passed Fwd filter:                        25  (0.00609459); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              25  [number of targets reported over threshold]
# CPU time: 0.54u 0.21s 00:00:00.75 Elapsed: 00:00:00.66
# Mc/sec: 625.95
//
Query:       MMETSP1137-20121227|4507_1  [L=311]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.3e-06   23.0   0.2    0.00031   16.5   0.1    2.0  2  TIGR03903 TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein


Domain annotation for each model (and alignments):
>> TIGR03903  TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.1   7.7e-08   0.00031      17      80 ..      83     146 ..      64     150 .. 0.82
   2 !    4.7   0.0   0.00028       1.1     117     183 ..     171     239 ..     158     265 .. 0.81

  Alignments for each domain:
  == domain 1    score: 16.5 bits;  conditional E-value: 7.7e-08
   TIGR03903  17 eeerlvaRFrReialCarLshPnivaLlDsGeaedgllFavFeyveGrtlrevLaadGaLpaae 80 
                  +e  v+   Rei + a ++hP iv+ +   e +     +v  + +G  l+++L+ +G+L+ ++
  MMETSP1137-20121227|4507_1  83 RKEAFVRHVEREIDITAVIEHPRIVETFAAFEIDKSTFVSVMPFCNGGSLADLLKKHGPLAEKD 146
                 4444556679**************************************************9776 PP

  == domain 2    score: 4.7 bits;  conditional E-value: 0.00028
   TIGR03903 117 veshakvLDFGigaLlpgvedadeatltrttevlGsPaYaaPeqLRgep..vtaksDlYaWGLivleCL 183
                 ++s+a++ DFG++ +++  + a  a + +t+   G+  Y  Pe   g++  + +k D+++ G++ +  L
  MMETSP1137-20121227|4507_1 171 LRSEAQLSDFGLSKVMASGDGATSAGMELTSYGAGTHGYLPPECYEGDSsrICPKVDVFSAGVVWFVTL 239
                 5789**********999999999999********************99733689*******99876555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (311 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        72  (0.0175524); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.27u 0.14s 00:00:00.41 Elapsed: 00:00:00.39
# Mc/sec: 1052.53
//
Query:       MMETSP1137-20121227|4508_1  [L=121]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (121 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        49  (0.0119454); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.12s 00:00:00.27 Elapsed: 00:00:00.27
# Mc/sec: 591.51
//
Query:       MMETSP1137-20121227|4509_1  [L=288]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0038   14.2   1.5      0.005   13.8   1.0    1.1  1  TIGR00342 TIGR00342: thiamine biosynthesis/tRNA modification protein ThiI
     0.0055   13.6   0.6     0.0077   13.1   0.4    1.1  1  TIGR02092 glgD: glucose-1-phosphate adenylyltransferase, GlgD subunit


Domain annotation for each model (and alignments):
>> TIGR00342  TIGR00342: thiamine biosynthesis/tRNA modification protein ThiI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   1.0   2.4e-06     0.005      24     127 ..     118     217 ..     109     240 .. 0.81

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 2.4e-06
   TIGR00342  24 knikkalkkleitkevkyefdklvvieiekeqrealkdllkkipGissfsllvkaeleldeikklkkalkelrkekktFkvevkRrdkdFalnsvevnkkvgek 127
                 ++i +  ++++ +++ + e+ ++++   +  ++ ++++ ++++ G++     v+ ++++++  + + +l+e+ k +kt+ ++v R+ k+  +  ++ ++++++ 
  MMETSP1137-20121227|4509_1 118 QAITNKAQQFTPRQYWR-ERHRIEMALHSAVNETLVEKGFAEVHGLQLL--KVEFNSNYEDT-ITNIQLQEQLKVTKTYSLDVTRVMKEVDILQSATKAEIAKI 217
                 55666666565555555.89999999999999****************6..88888999999.9999*********************9999999999998853 PP

>> TIGR02092  glgD: glucose-1-phosphate adenylyltransferase, GlgD subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.1   0.4   3.8e-06    0.0077     124     176 ..     175     227 ..     167     249 .. 0.82

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 3.8e-06
   TIGR02092 124 kvvinidlkavlkrHeetkkditvvykkvkkaeaseedtileldekgkvksik 176
                 ++++ni+l++ lk  ++   d+t v k+v+  ++ ++ +i +++++ + ++ +
  MMETSP1137-20121227|4509_1 175 DTITNIQLQEQLKVTKTYSLDVTRVMKEVDILQSATKAEIAKINAQAEREASV 227
                 689***************************99999999999998877655543 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (288 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       264  (0.0643588); expected 82.0 (0.02)
Passed bias filter:                      103  (0.0251097); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.23u 0.15s 00:00:00.38 Elapsed: 00:00:00.38
# Mc/sec: 1000.34
//
Query:       MMETSP1137-20121227|4510_1  [L=76]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (76 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       151  (0.0368113); expected 82.0 (0.02)
Passed bias filter:                      129  (0.0314481); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.18s 00:00:00.34 Elapsed: 00:00:00.31
# Mc/sec: 323.59
//
Query:       MMETSP1137-20121227|4511_1  [L=634]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   1.2e-208  692.3   0.0   1.4e-208  692.1   0.0    1.0  1  TIGR00204 dxs: 1-deoxy-D-xylulose-5-phosphate synthase
    1.1e-12   44.9   0.0    6.7e-05   19.2   0.0    4.0  4  TIGR00232 tktlase_bact: transketolase
    2.8e-09   34.1   1.5      5e-09   33.3   1.0    1.3  1  TIGR03181 PDH_E1_alph_x: pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit
    4.4e-08   30.2   0.1    1.1e-07   28.9   0.1    1.5  2  TIGR03182 PDH_E1_alph_y: pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit
     0.0055   12.9   0.4       0.12    8.5   0.3    2.5  3  TIGR03336 IOR_alpha: indolepyruvate ferredoxin oxidoreductase, alpha subunit


Domain annotation for each model (and alignments):
>> TIGR00204  dxs: 1-deoxy-D-xylulose-5-phosphate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  692.1   0.0  1.7e-211  1.4e-208      20     615 ..       2     627 ..       1     628 [. 0.92

  Alignments for each domain:
  == domain 1    score: 692.1 bits;  conditional E-value: 1.7e-211
   TIGR00204  20 klsdelrekllesvsasgGhlasglGvveltvalhkvfdtdkdkliwdvghqayahklltGrreelstlrqkkGlagfpkrseseydvlsaGhsstsisaglGiavaaelkgadekvvaviGdGaltaGmalealnhaGdlkkdllvilndn.emsisen.......vGalskalarllsgslyqslrdelkkilkklPevkekllerveeslkrlvvsgvlfeelGfnyiGPvdGhdlselietlknakklkg..PvllhvktkkGkGyklaekdtigfhgvgkfdlstGalkksksalpsyskifsdtllelakkdekivgitaamreGsgldklskkfPkryfdvaiaeqhavtlaaalaieGlkPvvaiystflqraydqvvhdvaiqklpvllaidraGivGadGethqGlfdisylrsiPnlvlmaPkdenelkqmlvtaleydegpialryPrGnavgv.........eltee....ekleiGksellrkged.......illlgfGtlveealevaeelkek..gieatvvdlrfvkPldeelikalakeieklvtleenvllGGvgsavaevlsdqn....vlvpvkrlgipdefiehgtqeevlaelGldteqlaekilall 615
                 +l+ elr   +++vs++gGhl+s+lGvveltvalh+vf+++ d++iwdv+hq y+hk+ltGrr+ ++tlrq  Gl+gf+krseseyd + aGhs+tsisa+lG+ava++l+g +++ va+iGdGa+t+Gma+ea+n+a  l+ +++v+ ndn ++s+ +         G+ls + +rl+ +  +q +rd +k+i k  P+  +++  +++e  +++++ g+lfeelGf yiGPvdGhdl++l+  l+n+++  g  Pvllh+kt+kG Gy +ae  + ++hgv+kf++stG+  +s s++psy+ +f+d l+++a++d  +v+itaam+ G+g+dk+ ++fPkr fdv+iaeqhavt+aa+la+eG+kP+ aiystflqraydqvvhd aiqk+pv + +draG+vG+dG+th G fd++yl +iPnlv+++     elk+m +t +e d+ p+ lryPrG+a+g          elte     e ++iGk ++lr+ +        i++l+ Gt +  a+++a +l ++  +i +tv d+rf+kPld++l+ +la+e++ l+t+ee+ + GG+g  v+ +l  ++     +  v+ + +pd++ie + q+e  +e Gl+++ +++  l+ll
  MMETSP1137-20121227|4511_1   2 QLAYELRWETINAVSKTGGHLGSSLGVVELTVALHYVFNAPADPIIWDVSHQVYPHKILTGRRDRMHTLRQAGGLSGFAKRSESEYDCFGAGHSTTSISAALGMAVAHDLRGMKRNSVAIIGDGAITGGMAYEAMNNAAYLNSRVIVVYNDNgQVSLPTGtpsaggiAGSLSAYTSRLIASRPFQDVRDIAKRINKLFPTTIQQTNAKLDEFARGMMTGGTLFEELGFLYIGPVDGHDLDNLVPILENIRDRGGdkPVLLHIKTEKGYGYPPAEAASDKYHGVPKFEVSTGKKLSSPSKTPSYTSVFADQLIDIAAEDRSVVAITAAMPGGTGIDKFGRRFPKRTFDVGIAEQHAVTFAAGLAVEGIKPFCAIYSTFLQRAYDQVVHDCAIQKIPVRFILDRAGLVGNDGPTHHGSFDLAYLGCIPNLVIVI-----ELKRMTQTVYEIDNLPSVLRYPRGSALGLdvlndllgyELTEMpakvEAVPIGKGRVLRSADSdkeatsrIAILSIGTRLAPAMHAARALTRRdsTIGVTVADARFMKPLDSDLVSKLAREHDVLITVEEGSI-GGFGDHVLHFLALNGflddGKLKVRPMVLPDTYIEAAGQHEQYEEAGLTERFIEATALKLL 627
                 68899***************************************************************************************************************************************************54666432112222258899999**************************************************************************9975444******************************************************************************************************************************************************************************97.....9************************9876112222222344334347899*********865223334449******************976522799********************************986.9**********988832223457999************************99998877665 PP

>> TIGR00232  tktlase_bact: transketolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.0     0.024        19       2      39 ..       2      38 ..       1      49 [. 0.80
   2 !    8.3   0.0   0.00016      0.13     145     186 ..     118     159 ..      96     198 .. 0.75
   3 !   10.5   0.0   3.5e-05     0.029     201     262 ..     224     287 ..     210     312 .. 0.86
   4 !   19.2   0.0   8.1e-08   6.7e-05     396     484 ..     344     431 ..     333     442 .. 0.87

  Alignments for each domain:
  == domain 1    score: 1.2 bits;  conditional E-value: 0.024
   TIGR00232  2 klvnairlLavdaiekaksGhpGaplGlapiaevlwkk 39
                +l++ +r  +++a++k  +Gh G +lG+ ++ ++l+  
  MMETSP1137-20121227|4511_1  2 QLAYELRWETINAVSKT-GGHLGSSLGVVELTVALHYV 38
                667788999999*9995.9*********9999888654 PP

  == domain 2    score: 8.3 bits;  conditional E-value: 0.00016
   TIGR00232 145 tyvlvGDGdlqeGisseaaslaGhlkLgkLivlyDsn.kisid 186
                   +++GDG +  G+++ea + a  l+  ++iv+y++n ++s+ 
  MMETSP1137-20121227|4511_1 118 SVAIIGDGAITGGMAYEAMNNAAYLN-SRVIVVYNDNgQVSLP 159
                 5689****************998887.6788888777367765 PP

  == domain 3    score: 10.5 bits;  conditional E-value: 3.5e-05
   TIGR00232 201 feaygWevlevedgedleeikkaiekakks.kdkPtlikvktiigfgsp.nkegteevhgaplk 262
                 fe  g+ ++   dg+dl+++   +e+ +    dkP l+++kt  g+g p  ++ + + hg p  
  MMETSP1137-20121227|4511_1 224 FEELGFLYIGPVDGHDLDNLVPILENIRDRgGDKPVLLHIKTEKGYGYPpAEAASDKYHGVPKF 287
                 99999*********************9976269**************86256677889998864 PP

  == domain 4    score: 19.2 bits;  conditional E-value: 8.1e-08
   TIGR00232 396 gnyiryGvRefamgaimngialhGglkpygatFlvFvdYak.paiRlaaLmklkviyvythDsigvGeDGpthqpveqlaslRaipnlsv 484
                 ++ + +G+ e    + + g+a+ G +kp++a + +F + a  + +   a+ k +v +++      vG+DGpth+    la l  ipnl +
  MMETSP1137-20121227|4511_1 344 KRTFDVGIAEQHAVTFAAGLAVEG-IKPFCAIYSTFLQRAYdQVVHDCAIQKIPVRFILDRAG-LVGNDGPTHHGSFDLAYLGCIPNLVI 431
                 566889****999999*****986.89****99999987751567889**********97655.49*********************976 PP

>> TIGR03181  PDH_E1_alph_x: pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.3   1.0   6.1e-12     5e-09     126     190 ..      97     160 ..      94     171 .. 0.89

  Alignments for each domain:
  == domain 1    score: 33.3 bits;  conditional E-value: 6.1e-12
   TIGR03181 126 tqvlhAaGvAlalklkgekevavayiGdGgtsegdfyealnfAavfkapvvfvvqNNqwAISvpr 190
                 t+++ A G+A+a  l+g k+ +va+iGdG+   g  yea+n Aa  +  v++v + N+  +S p+
  MMETSP1137-20121227|4511_1  97 TSISAALGMAVAHDLRGMKRNSVAIIGDGAITGGMAYEAMNNAAYLNSRVIVVYNDNG-QVSLPT 160
                 67899*******************************************9998888886.466665 PP

>> TIGR03182  PDH_E1_alph_y: pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.9   0.1   1.3e-10   1.1e-07     108     171 ..      91     154 ..      74     164 .. 0.91
   2 ?   -3.5   0.0         1   8.3e+02     201     235 ..     235     267 ..     234     271 .. 0.75

  Alignments for each domain:
  == domain 1    score: 28.9 bits;  conditional E-value: 1.3e-10
   TIGR03182 108 GhgivgaqvplatGlafaekykkedevtlaffGdgavnqGqvyEslnlaalwklPvifviennk 171
                 G g  +  ++ a G+a a+ +++ ++ ++a++Gdga+  G  yE++n aa  +  vi v ++n 
  MMETSP1137-20121227|4511_1  91 GAGHSTTSISAALGMAVAHDLRGMKRNSVAIIGDGAITGGMAYEAMNNAAYLNSRVIVVYNDNG 154
                 45556788999**********************************************9998884 PP

  == domain 2    score: -3.5 bits;  conditional E-value: 1
   TIGR03182 201 vdGmdvlavreaakeavervragkgPvllelktyR 235
                 vdG d+ +     +++ +  r g++Pvll +kt +
  MMETSP1137-20121227|4511_1 235 VDGHDLDNLVPILENIRD--RGGDKPVLLHIKTEK 267
                 677777777777776655..78999*****99975 PP

>> TIGR03336  IOR_alpha: indolepyruvate ferredoxin oxidoreductase, alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.5   0.3   0.00015      0.12     407     472 ..      97     168 ..      87     181 .. 0.76
   2 ?   -1.5   0.0      0.16   1.3e+02     381     433 ..     329     378 ..     319     401 .. 0.60
   3 ?    0.7   0.0     0.032        26     253     287 ..     529     563 ..     494     567 .. 0.70

  Alignments for each domain:
  == domain 1    score: 8.5 bits;  conditional E-value: 0.00015
   TIGR03336 407 asigvasGlska....kekkrivatiGDstffhaGl..psLinavynkanivvviLDn.ritamtGeqpnPgl 472
                 +si++a G++ a    + k++ va+iGD +    G+  +++ na y +++++vv  Dn ++   tG+ +  g+
  MMETSP1137-20121227|4511_1  97 TSISAALGMAVAhdlrGMKRNSVAIIGDGAI-TGGMayEAMNNAAYLNSRVIVVYNDNgQVSLPTGTPSAGGI 168
                 578888888888555467899*******985.5666337999***************9445555777666665 PP

  == domain 2    score: -1.5 bits;  conditional E-value: 0.16
   TIGR03336 381 fpsDiGCYtLGiapplktvdttlcmGasigvasGlskakekkrivatiGDstf 433
                  p+  G   +G + p +t d  ++   +++ a Gl+   + k+ +a+   stf
  MMETSP1137-20121227|4511_1 329 MPGGTGIDKFGRRFPKRTFDVGIAEQHAVTFAAGLAVE-GIKPFCAIY--STF 378
                 55555666666666666666666666666666666543.334444332..444 PP

  == domain 3    score: 0.7 bits;  conditional E-value: 0.032
   TIGR03336 253 gvevsvlkiGlayPlpeelveeflekveevlvvee 287
                  + v+v+   +  Pl+++lv++++++++ ++ vee
  MMETSP1137-20121227|4511_1 529 TIGVTVADARFMKPLDSDLVSKLAREHDVLITVEE 563
                 3457777777889***************9999999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (634 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       132  (0.0321794); expected 82.0 (0.02)
Passed bias filter:                      122  (0.0297416); expected 82.0 (0.02)
Passed Vit filter:                        24  (0.0058508); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.50u 0.16s 00:00:00.66 Elapsed: 00:00:00.56
# Mc/sec: 1468.09
//
Query:       MMETSP1137-20121227|4512_1  [L=311]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (311 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        55  (0.0134081); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.10s 00:00:00.34 Elapsed: 00:00:00.35
# Mc/sec: 1172.82
//
Query:       MMETSP1137-20121227|4513_1  [L=104]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (104 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        54  (0.0131643); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.12s 00:00:00.26 Elapsed: 00:00:00.26
# Mc/sec: 527.96
//
Query:       MMETSP1137-20121227|4514_1  [L=114]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (114 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       100  (0.0243784); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.16s 00:00:00.31 Elapsed: 00:00:00.31
# Mc/sec: 485.38
//
Query:       MMETSP1137-20121227|4515_1  [L=135]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (135 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        20  (0.00487567); expected 82.0 (0.02)
Passed bias filter:                       20  (0.00487567); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.16s 00:00:00.32 Elapsed: 00:00:00.26
# Mc/sec: 685.33
//
Query:       MMETSP1137-20121227|4516_1  [L=539]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (539 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       142  (0.0346173); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.14s 00:00:00.50 Elapsed: 00:00:00.44
# Mc/sec: 1616.87
//
Query:       MMETSP1137-20121227|4517_1  [L=488]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   1.2e-169  562.7   0.0   2.1e-168  558.7   0.0    1.9  1  TIGR00457 asnS: asparagine--tRNA ligase
    4.9e-55  185.0   0.0    6.7e-44  148.3   0.0    2.0  2  TIGR00458 aspS_arch: aspartate--tRNA ligase
    9.1e-27   91.4   0.0      1e-11   41.8   0.0    3.0  3  TIGR00459 aspS_bact: aspartate--tRNA ligase
    1.2e-13   48.3   0.1    9.2e-09   32.3   0.2    3.1  2  TIGR00499 lysS_bact: lysine--tRNA ligase
    9.8e-09   32.9   0.0    2.6e-08   31.5   0.0    1.7  1  TIGR00462 genX: EF-P lysine aminoacylase GenX
     0.0065   13.6   0.1      0.085   10.0   0.0    2.1  2  TIGR02367 PylS_Cterm: pyrrolysine--tRNA ligase, C-terminal region


Domain annotation for each model (and alignments):
>> TIGR00457  asnS: asparagine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  558.7   0.0    3e-171  2.1e-168       2     455 .]      26     488 .]      25     488 .] 0.97

  Alignments for each domain:
  == domain 1    score: 558.7 bits;  conditional E-value: 3e-171
   TIGR00457   2 aaikdlleqvkkavdeevkvsgWvktkRsskkiaFlelrDGsslkalqavikkeleeeleqelkklttgssvsvsgkvvespkkkqelElkvkkievvgeaeeedyplqkkehsleflrelahLrlRtktlsAvlkvRsalskaiheyfqkegfvkvstPiltssdcEGagelFkvkt...........................egvdfskdffgkeayLtvsgqlelEalalalskvytlgptFRAEksntkRHlsEfwmiEpElaFvnledllqlieelikyiikavleeakqelkfleknvekkkikkleeiisskfaritYtdAieiLkesda..kkkfeledl.wGvdlktehErflaeeyfksPvfvtdyPkeikaFYmkqnddektvaavDllvPkiGEiiGGseReddldkLeerlkeegldteelkWyldlRkyGsvphsGfGlGleRlvayltglenirdaipfpRtaesikf 455
                 +++k ll+  ++a+++ v++sgWv+t R +k +aF+el+DGs+lk +q v+ +e+e      + +l+tg++v++ g+vvesp+k+q++E++v+++ +vg    + yplqkk+hsleflr++ahLr+Rt++++Av++vRsals+a+h++f  +gf   +tP++t+sdcEGagelF+v+t                           e+ ++++dffg+ ayLtvsgql++E++a+al++vyt+gptFRAE+snt RHl+EfwmiEpE+aF++le +++ +ee++ky++++ le+++++l f+                  kfar+ Y+dA+ +L+e+ +  ++ ++++d+ +G+dl+tehEr lae  fk+ vfv +yPk ikaFYm+ ndd+ktvaa+DllvP+iGE+iGGs+Re++ d+L ++++e gl+  +++WyldlR+yGsvph+G+GlG+eRlv y+t + nirdaipfpR ++s++f
  MMETSP1137-20121227|4517_1  26 VKVKRLLSMGASAIGQVVRLSGWVRTVRDQKAFAFIELNDGSCLKGVQLVVPGETEA--YGVVDDLSTGAAVTIFGEVVESPAKGQAIEVRVSSLTLVGDCPSDGYPLQKKRHSLEFLRTIAHLRPRTNAIGAVARVRSALSYATHSFFASKGFX--DTPLITASDCEGAGELFRVTTlpydarpddadakndseaktgseakvaEKDPLADDFFGRAAYLTVSGQLSAETYACALGDVYTFGPTFRAEESNTARHLAEFWMIEPEMAFCDLEGDMNNAEEYVKYVVNYALENCAEDLAFFT-----------------KFARVSYSDAVVMLQEEISkdRSTWDYPDVeFGTDLATEHERWLAEVAFKKAVFVYNYPKAIKAFYMRDNDDGKTVAAMDLLVPGIGELIGGSQREERHDVLVRKMEEVGLNPADYWWYLDLRRYGSVPHAGYGLGFERLVCYVTSIGNIRDAIPFPRYPGSAEF 488
                 57899999999******************************************7555..599********************************************************************************************7..79******************************************998656799****************************************************************************************9985.................59************99855458899**************************************************************************************************************************************999887 PP

>> TIGR00458  aspS_arch: aspartate--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.6   0.0   3.4e-12   2.3e-09      12     177 ..      40     200 ..      33     206 .. 0.87
   2 !  148.3   0.0   9.9e-47   6.7e-44     176     422 ..     235     482 ..     229     485 .. 0.88

  Alignments for each domain:
  == domain 1    score: 34.6 bits;  conditional E-value: 3.4e-12
   TIGR00458  12 gkevllrgwvheirdlGalifvllrdregl..iqilvkkkkvskelfklikklkkesvvavkGkvkekekapqgleiipeklevlneak.eplPldleekveaeldtrldarfldlrrpkvqaifkirsevlesvreflaeegfievntPklvasateGGtelfeityf 177
                 g+ v l gwv  +rd+ a++f+ l d   l  +q +v+ +    e + ++  l +   v + G+v e+ +  q++e+ +++l  +  ++ +  Pl+ + ++   l t      l  r+  + a+ ++rs +  +   f+a +gf   +tP + as  eG  elf +t +
  MMETSP1137-20121227|4517_1  40 GQVVRLSGWVRTVRDQKAFAFIELNDGSCLkgVQLVVPGE---TEAYGVVDDLSTGAAVTIFGEVVESPAKGQAIEVRVSSLTLVGDCPsDGYPLQKKRHSLEFLRTIA---HLRPRTNAIGAVARVRSALSYATHSFFASKGFX--DTPLITASDCEGAGELFRVTTL 200
                 68899*********************99876688888875...677888999*******************************99987625799987776665555544...456799999***********************7..6******************965 PP

  == domain 2    score: 148.3 bits;  conditional E-value: 9.9e-47
   TIGR00458 176 yfereaflaqsPqlykqvllaaglervyeiaPifraeehntkrhlnevisidiemafedhkdvldileelvvrvfedvaeklkkelevlevklevpeeklerltydeaieilrakGk.........eikdgedlsteaekllGe.kmdglyfitdfPteikPfytmPdednPeisksfdllyrdl.eissGaqrihdydllvekikakGlePeslksyleafkyGmPPhaGwGlGaerlvmvlldlknireavlfPrd 422
                 +f r a+l+ s ql      a+ l  vy  +P fraee+nt rhl+e+  i+ emaf d ++ ++  ee v+ v++   e+++++l           +k+ r+ y +a+ +l+ +           +++ g dl+te e+ l e  ++   f+ ++P +ik fy m d+d+ ++  + dll+ +  e+  G+qr   +d+lv k+ + Gl+P  +  yl+  +yG  PhaG+GlG erlv  ++ + nir+a+ fPr 
  MMETSP1137-20121227|4517_1 235 FFGRAAYLTVSGQLSAET-YACALGDVYTFGPTFRAEESNTARHLAEFWMIEPEMAFCDLEGDMNNAEEYVKYVVNYALENCAEDLAFF--------TKFARVSYSDAVVMLQEEISkdrstwdypDVEFGTDLATEHERWLAEvAFKKAVFVYNYPKAIKAFY-MRDNDDGKTVAAMDLLVPGIgELIGGSQREERHDVLVRKMEEVGLNPADYWWYLDLRRYGSVPHAGYGLGFERLVCYVTSIGNIRDAIPFPRY 482
                 899***********9887.57789**********************************************************9987654........46777777777777654321111122222789999***********8358999**************.66779**********9976449*********************************************************************96 PP

>> TIGR00459  aspS_bact: aspartate--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.9   0.0   2.6e-14   1.8e-11      11     176 ..      35     193 ..      27     199 .. 0.87
   2 !    5.0   0.0    0.0019       1.3     215     278 ..     265     334 ..     256     362 .. 0.78
   3 !   41.8   0.0   1.5e-14     1e-11     449     557 ..     377     482 ..     346     488 .] 0.88

  Alignments for each domain:
  == domain 1    score: 40.9 bits;  conditional E-value: 2.6e-14
   TIGR00459  11 kekslgkkvtlaGWverrkdlGeliFidlrDkeg..ivqvvsdkkkealelakelrnedvvqvkgkvslreeesknrnldtgeievlaeeitvln..kskkkPleiekkeaeeevrlkyRYLdLRrpkmqqrlklRskvtkavRnflddkgFleietPiLtkatPeGard 176
                   +++g+ v l+GWv++ +d     Fi l D +    vq+v+  ++ea+ ++++l +   v++ g+v+       ++  + ++iev  +++t++    s+  Pl+ +++ + e +r    +L  R +++    + Rs ++ a+ +f++ kgF +  tP++t +  eGa +
  MMETSP1137-20121227|4517_1  35 GASAIGQVVRLSGWVRTVRDQKAFAFIELNDGSClkGVQLVVPGETEAYGVVDDLSTGAAVTIFGEVV-------ESPAKGQAIEVRVSSLTLVGdcPSDGYPLQKKRH-SLEFLR-TIAHLRPRTNAIGAVARVRSALSYATHSFFASKGFXD--TPLITASDCEGAGE 193
                 56789***************************99545******************************4.......44478899**********9844567777765544.455545.5788999****************************86..************76 PP

  == domain 2    score: 5.0 bits;  conditional E-value: 0.0019
   TIGR00459 215 rcfRDeDlRaDRq.PeftqiDlemsFlnqedvmelveklvsevfkevkk.....idlkkkfpvltyeeam 278
                   fR e++   R   ef  i+ em+F++ e  m+ +e+ v+ v +   +     + +  kf ++ y++a+
  MMETSP1137-20121227|4517_1 265 PTFRAEESNTARHlAEFWMIEPEMAFCDLEGDMNNAEEYVKYVVNYALEncaedLAFFTKFARVSYSDAV 334
                 679999999888648***********************99999876655455334444567777777765 PP

  == domain 3    score: 41.8 bits;  conditional E-value: 1.5e-14
   TIGR00459 449 hpFtspkeedleklekapeealaeayDlvlnGv.elGgGsiRihdkelqekvfeilgideeearekFgflleafeyGaPphaGlalGlDRlvmllaetdsiRdviaFPkt 557
                  ++  pk  ++  ++++ +  +  a Dl + G+ el gGs R   +++  + +e +g+++++    + + l+   yG+ phaG +lG++Rlv  ++   +iRd i FP+ 
  MMETSP1137-20121227|4517_1 377 FVYNYPKAIKAFYMRDNDDGKTVAAMDLLVPGIgELIGGSQREERHDVLVRKMEEVGLNPAD----YWWYLDLRRYGSVPHAGYGLGFERLVCYVTSIGNIRDAIPFPRY 482
                 4566777888888888888888999*******889**************************5....999***************************************85 PP

>> TIGR00499  lysS_bact: lysine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.3   0.0     0.001       0.7      54     139 ..      41     126 ..      26     192 .. 0.68
   2 !   32.3   0.2   1.3e-11   9.2e-09     240     491 ..     257     481 ..     254     483 .. 0.76

  Alignments for each domain:
  == domain 1    score: 6.3 bits;  conditional E-value: 0.001
   TIGR00499  54 levsiaGRikakRsmgkatFitlqdes..gklqlyvnkdklsedveeleeklldlGDiigvkGkl..kktktgelsvkveelklltkalr 139
                 + v ++G + + R ++  +Fi+l+d s    +ql+v  ++ +        + l +G  +++ G +  + +k + + v v++l+l+  +  
  MMETSP1137-20121227|4517_1  41 QVVRLSGWVRTVRDQKAFAFIELNDGSclKGVQLVVPGETEAY---GVVDD-LSTGAAVTIFGEVveSPAKGQAIEVRVSSLTLVGDCPS 126
                 568899*******99999*********7778****98765433...33333.47899999999994445567788889999999988743 PP

  == domain 2    score: 32.3 bits;  conditional E-value: 1.3e-11
   TIGR00499 240 lekvyEigrvFRnEGvd.ttHnpEFttiElYqayadyedllelteellktlvkellgtlkikykeeeldlkkpvkkitmleaikkidketgislddlkdsetakalakklaievaekslslgkilnklfeefvEetliqPtfiteyPaeisPLAkrddenpelteRFElFikgkEianaysElndpldqrerfeeqvaekeagddeasllDe.dfvealeyGlpptgGlGiGiDRlvmlltdsksirdvllFpa 491
                 l  vy  g +FR E  +  +H +EF +iE  +a+ d+e  ++++ee +k++v+  l     +   e+l + +++ ++++ +a+  +  + +is    kd  t      + ++++    + +++ l+++        + +  f+++yP++i     rd+++ + +   +l + g        El    + +er +  v++ e      +  D+  +++  +yG +p +G+G+G +Rlv  +t   +ird ++Fp 
  MMETSP1137-20121227|4517_1 257 LGDVYTFGPTFRAEESNtARHLAEFWMIEPEMAFCDLEGDMNNAEEYVKYVVNYAL-----ENCAEDLAFFTKFARVSYSDAVVML--QEEIS----KDRSTWDYPDVEFGTDL---ATEHERWLAEV-------AFKKAVFVYNYPKAIKAFYMRDNDDGKTVAAMDLLVPG------IGELIGGSQREERHDVLVRKMEEV--GLNPADYwWYLDLRRYGSVPHAGYGLGFERLVCYVTSIGNIRDAIPFPR 481
                 5679********98765169******************************997666.....45567788999***********933..33344....33333333333333333...22333444333.......333568*******************999******9987......467777777778877766654433..333445515788889********************************95 PP

>> TIGR00462  genX: EF-P lysine aminoacylase GenX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.5   0.0   3.8e-11   2.6e-08      72     304 .]     256     479 ..     236     479 .. 0.78

  Alignments for each domain:
  == domain 1    score: 31.5 bits;  conditional E-value: 3.8e-11
   TIGR00462  72 gsgkifqlakvfRneer.grlHnpEFtmLEwYrvgadleelmeeveellqevle.deeaeverlsyaeaferylgidpltasleelkeaaekag.eaaseeedredlldlllvekvepklgkerptflydyPasqaaLarikkddervAeRfElYikglElaNgfeELtdaaeqrkRfeednaerkalgleevplde.kllaaleaglpecsGvAlGlDRLlmlalgaesieevlaf 304
                   g+++ ++ +fR ee+  ++H  EF m+E   + +dle  m++ ee ++ v++   e+ +e l +   f+r+   d + + +ee+++  ++++   ++  +d ++  ++ l+     ++++++ +f+y+yP++  a    ++dd ++ + ++l + g+       EL+  +++++R +   ++ ++ gl   p d   +l+  + g  + +G  lG++RL+  ++   +i++ + f
  MMETSP1137-20121227|4517_1 256 ALGDVYTFGPTFRAEESnTARHLAEFWMIEPEMAFCDLEGDMNNAEEYVKYVVNyALENCAEDLAFFTKFARVSYSDAVVMLQEEISKDRSTWDyPDVEFGTDLATEHERWLA-----EVAFKKAVFVYNYPKAIKAFYMRDNDDGKTVAAMDLLVPGI------GELIGGSQREERHDVLVRKMEEVGL--NPADYwWYLDLRRYGSVPHAGYGLGFERLVCYVTSIGNIRDAIPF 479
                 5689************86889********************************955566678888888888888888877766666666666654333444444444444444.....478899********999998888888888777789977776......79**999999997666555555555..5566514677777888889*******************9998765 PP

>> TIGR02367  PylS_Cterm: pyrrolysine--tRNA ligase, C-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.0   0.0   0.00012     0.085     107     181 ..     260     339 ..     258     347 .. 0.72
   2 ?    1.3   0.0     0.058        39     201     227 ..     449     475 ..     424     482 .. 0.82

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 0.00012
   TIGR02367 107 ifeiGscyrk.esdGsehleeftmln....lvelGspeeerrerleelikevleelGideyelead.esvvyGdtvdvmkg 181
                 ++  G+ +r  es+ ++hl ef m++    +++l   +++ +e ++ +++  le+    +  + ++   v y d+v +++ 
  MMETSP1137-20121227|4517_1 260 VYTFGPTFRAeESNTARHLAEFWMIEpemaFCDLEGDMNNAEEYVKYVVNYALENCAE-DLAFFTKfARVSYSDAVVMLQE 339
                 67889***962799**********8533338888888888888888888888888766.4444433155667777766665 PP

  == domain 2    score: 1.3 bits;  conditional E-value: 0.058
   TIGR02367 201 vvkpwvGlGfGlerllkvredtknvrs 227
                  + p  G G+G+erl+     + n+r 
  MMETSP1137-20121227|4517_1 449 GSVPHAGYGLGFERLVCYVTSIGNIRD 475
                 456999*********998888888886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (488 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       110  (0.0268162); expected 82.0 (0.02)
Passed bias filter:                      106  (0.0258411); expected 82.0 (0.02)
Passed Vit filter:                        21  (0.00511945); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.50u 0.13s 00:00:00.63 Elapsed: 00:00:00.63
# Mc/sec: 1022.39
//
Query:       MMETSP1137-20121227|4519_1  [L=412]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (412 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        63  (0.0153584); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.16s 00:00:00.44 Elapsed: 00:00:00.32
# Mc/sec: 1699.36
//
Query:       MMETSP1137-20121227|4520_1  [L=48]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (48 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        35  (0.00853242); expected 82.0 (0.02)
Passed bias filter:                       35  (0.00853242); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.13s 00:00:00.24 Elapsed: 00:00:00.24
# Mc/sec: 263.98
//
Query:       MMETSP1137-20121227|4521_1  [L=263]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (263 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        93  (0.0226719); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.13s 00:00:00.35 Elapsed: 00:00:00.62
# Mc/sec: 559.89
//
Query:       MMETSP1137-20121227|4522_1  [L=605]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (605 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       276  (0.0672843); expected 82.0 (0.02)
Passed bias filter:                      113  (0.0275475); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.16s 00:00:00.61 Elapsed: 00:00:00.81
# Mc/sec: 985.84
//
Query:       MMETSP1137-20121227|4523_1  [L=376]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (376 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        88  (0.0214529); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.14s 00:00:00.41 Elapsed: 00:00:00.42
# Mc/sec: 1181.62
//
Query:       MMETSP1137-20121227|4524_1  [L=670]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.2e-50  168.9   1.7    1.5e-45  153.9   0.5    2.4  2  TIGR02332 HpaX: 4-hydroxyphenylacetate permease
    2.6e-49  166.0   5.9      4e-37  125.9   0.2    2.2  2  TIGR00893 2A0114: D-galactonate transporter
    4.1e-14   50.2   5.6    4.1e-14   50.2   3.9    2.6  2  TIGR00881 2A0104: phosphoglycerate transporter family protein
    3.7e-07   26.9   0.4    6.9e-07   26.0   0.3    1.3  1  TIGR00894 2A0114euk: Na(+)-dependent inorganic phosphate cotransporter
    6.4e-05   19.9   9.4    6.4e-05   19.9   6.5    2.4  2  TIGR00895 2A0115: MFS transporter, aromatic acid:H+ symporter (AAHS) family
     0.0037   14.1   0.1     0.0065   13.4   0.1    1.3  1  TIGR03469 HpnB: hopene-associated glycosyltransferase HpnB


Domain annotation for each model (and alignments):
>> TIGR02332  HpaX: 4-hydroxyphenylacetate permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  153.9   0.5   2.2e-48   1.5e-45       3     210 ..      79     287 ..      77     301 .. 0.95
   2 !   13.3   0.0     1e-05    0.0071     347     398 ..     520     571 ..     508     575 .. 0.92

  Alignments for each domain:
  == domain 1    score: 153.9 bits;  conditional E-value: 2.2e-48
   TIGR02332   3 kklfrrlivflfvlfvfsfldrinigfagltmgkdlglsatmfglaatlfyvayvifgipsnimlakvgarrwiatimvlwgiastatmfatspeslyllrilvgiaeagflpgillyltfwfpayfraranalfmvampvttalglilsgyil.aldgllalkgwqwlflleglpsvllgvvvwfylddspdkakwldkeekkalkem 210
                 +kl  rl+  l + + +sf+dr n+ fa ltmg++l lsa  fglaa +f+ +y  + +p    la+  arr +a+ ++ wg ++t      s  sl ++r+ +g aeagf pg+l +lt wfp  + +    ++ va      +g + sg ++ ++dg+l l gw+wlfll+g p+vllg+ v  +l   p  a+wld  e+++l + 
  MMETSP1137-20121227|4524_1  79 HKLRVRLLPPLALGYALSFIDRSNLAFAELTMGHELQLSADGFGLAAGVFFSSYCAMQLPCLYTLAVTDARRVLAACLLGWGCCATGMAAVNSLLSLCIVRFCLGFAEAGFYPGVLFFLTRWFPRSHVSTPTQVLSVAAGGGYFIGXVSSGPLMsSFDGVLGLAGWRWLFLLQGSPAVLLGLWVLAHLPSEPSAATWLDASERDVLLSC 287
                 68888999999999************************************************************************99999999*********************************************************877369*********************************************9998665 PP

  == domain 2    score: 13.3 bits;  conditional E-value: 1e-05
   TIGR02332 347 sfsamaifwttpdqvislraravaiavinavgnvgsalsplligilkdltgs 398
                  ++am  fw+    v   +   v+ia++n+ gn+g    p+ +g l+d+ gs
  MMETSP1137-20121227|4524_1 520 IYNAMGSFWALHHTVTPPHLWHVSIALVNSLGNLGGFAGPYALGALHDAFGS 571
                 57899999999999999999*****************************998 PP

>> TIGR00893  2A0114: D-galactonate transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  125.9   0.2   5.8e-40     4e-37       1     194 [.      91     291 ..      91     301 .. 0.91
   2 !   42.6   0.6   1.2e-14   8.1e-12     203     376 ..     381     571 ..     353     574 .. 0.76

  Alignments for each domain:
  == domain 1    score: 125.9 bits;  conditional E-value: 5.8e-40
   TIGR00893   1 lvtvinyldratlSiAavtlkedLglsaaqyglvfsafsigyvlfqlpggllldriGakktlavaivlWglftllqafatalvslivlRvllGlaEaplfPgiikivasWFPakeratavsifnsaqalgaiiggplvgwilvefs.......WqlvFiieGvlaiilgvlilkvikdkpekakvlkeeeksivvggllae 194
                 l +++ ++dr++l++A +t+ ++L+lsa+ +gl + +f+  y  +qlp  + l  + a+ +la  ++ Wg   + +a++ +l sl ++R+ lG aEa++ Pg+   ++ WFP++  +t + +  +a++ g  ig   +g ++ +f+       W+++F++ G +a++lg+ +l+ ++ +p+ a +l++ e+ ++   l  e
  MMETSP1137-20121227|4524_1  91 LGYALSFIDRSNLAFAELTMGHELQLSADGFGLAAGVFFSSYCAMQLPCLYTLAVTDARRVLAACLLGWGCCATGMAAVNSLLSLCIVRFCLGFAEAGFYPGVLFFLTRWFPRSHVSTPTQVLSVAAGGGYFIGXVSSGPLMSSFDgvlglagWRWLFLLQGSPAVLLGLWVLAHLPSEPSAATWLDASERDVLLSCLGLE 291
                 6799******************************************************************************************************************99999888876666666666666666667788999************************************999877666555 PP

  == domain 2    score: 42.6 bits;  conditional E-value: 1.2e-14
   TIGR00893 203 akkaqikelLkdrrviglalgqflvnillyffltwfplylkqergls.lleagllaslpaivgfvgmvlggilsdlll.kkg...kslvlarktaiiag.lvlsllliatnlva.....skiaalalvalaffg..kgl....aailwavisdvlskeiagltgGlinllGnlagivgPivigaiaattGs 376
                 a  ++  e+L+++ +++ a+  f +++  y+ + + p+ lk+ + +  l + +ll  +p ++ +v ++l+   s  +  ++    + +v a   + ++g ++l++ + + ++ +     + +a+l++ al+  g  + l    +   wa+   v ++    ++++l+n+lGnl+g++gP ++ga+ ++ Gs
  MMETSP1137-20121227|4524_1 381 ALLDATVEALRQPYMWLFAANHFGAAMXAYVVSFFLPMELKEVLPSWpLWKLSLLLGVPIACSAVTGPLLTLWSERATgEWNrkrRLVVCAFGCTGTGGlMMLCAGIAMLGSGNassraPRRAVLSGTALGLSGftHTLiynaMGSFWALHHTVTPPHLWHVSIALVNSLGNLGGFAGPYALGALHDAFGS 571
                 55677889***********************************9876156999************9999999998764344343244555555555544144444444443322234558899999999865541144332125567****************************************9996 PP

>> TIGR00881  2A0104: phosphoglycerate transporter family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.2   3.9   6.1e-17   4.1e-14       2     176 ..      91     271 ..      90     281 .. 0.88
   2 ?    1.7   1.4     0.033        23     310     374 ..     500     570 ..     440     572 .. 0.63

  Alignments for each domain:
  == domain 1    score: 50.2 bits;  conditional E-value: 6.1e-17
   TIGR00881   2 igylayylvRknfalalpelqeeiglsktdlGlllsafsiaYgiskfvvgvvsDrvsarvflaigLilvaivnlflgfssslwvliallalnGlfqglgwppcgrlltkwfsrserGtvvaiwnish....nvggallpplvll..aialllswhvvfivpgiiaiivslilllllrdspq 176
                 +gy++ +++R n+a+a   +  e++ls++  Gl +  f   Y   +++  + +    ar +la+ L++++ +  ++++++sl +l ++++  G++++   p +   lt+wf+rs+  t   +++++     ++g     pl+    ++  l  w+++f++ g  a++++l +l+ l  +p 
  MMETSP1137-20121227|4524_1  91 LGYALSFIDRSNLAFAELTMGHELQLSADGFGLAAGVFFSSYCAMQLPCLYTLAVTDARRVLAACLLGWGCCATGMAAVNSLLSLCIVRFCLGFAEAGFYPGVLFFLTRWFPRSHVSTPTQVLSVAAgggyFIGXVSSGPLMSSfdGVLGLAGWRWLFLLQGSPAVLLGLWVLAHLPSEPS 271
                 79*******************************************************************************************************************999999987522225666656664433123455779*****************99988877765 PP

  == domain 2    score: 1.7 bits;  conditional E-value: 0.033
   TIGR00881 310 klvvlillfvlGflvyGpill......igvaaselapkkaiGtaaglvglfaylggilaglplgyladlfg 374
                 +   ++++ +lG++++   l+      ++ +   + p+++   + +lv+ +++lgg++ +  lg l d fg
  MMETSP1137-20121227|4524_1 500 PRRAVLSGTALGLSGFTHTLIynamgsFWALHHTVTPPHLWHVSIALVNSLGNLGGFAGPYALGALHDAFG 570
                 33444555555555554444422222256777788899999999999999999999999999999988886 PP

>> TIGR00894  2A0114euk: Na(+)-dependent inorganic phosphate cotransporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.0   0.3     1e-09   6.9e-07      78     242 ..     121     289 ..     108     306 .. 0.78

  Alignments for each domain:
  == domain 1    score: 26.0 bits;  conditional E-value: 1e-09
   TIGR00894  78 qGlilssvfygslilqipvGylakkygtkkvigaalllssvlslliPiaaavgvalvivlRvlqGlaeglvspaqhellakWiPPkERsrlvsavlsGaqlGtlivlpisGlicesd......lgWpavfYifgivgtvvlilwlvlvyddPseHpkisesEkkyiekslv 242
                  Gl  + +f ++  +q+p  y       ++v++a  ll+   +    +aa  +   ++++R+  G+ae+   p+   +l++W+P    s  + +    a  G +i    sG ++ s        gW ++f + g  + ++ +  l  +  +Ps    ++ sE++ + + l 
  MMETSP1137-20121227|4524_1 121 FGLAAGVFFSSYCAMQLPCLYTLAVTDARRVLAA-CLLGW-GCCATGMAAVNSLLSLCIVRFCLGFAEAGFYPGVLFFLTRWFPRSHVSTPTQVLSVAAGGGYFIGXVSSGPLMSSFdgvlglAGWRWLFLLQGSPAVLLGLWVLAHLPSEPSAATWLDASERDVLLSCLG 289
                 5666667777888999999777777777777644.44454.4555799************************************9998876666555556677777777777766655777888**********9887777666667788999999999999998776665 PP

>> TIGR00895  2A0115: MFS transporter, aromatic acid:H+ symporter (AAHS) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   6.5   9.4e-08   6.4e-05      35     193 ..      90     267 ..      88     288 .. 0.80
   2 ?   -2.3   2.3       0.5   3.4e+02      54      99 ..     472     519 ..     464     525 .. 0.79

  Alignments for each domain:
  == domain 1    score: 19.9 bits;  conditional E-value: 9.4e-08
   TIGR00895  35 vlgfaapalske.wgldkvelGf..llsagLiGmvlGallfgplaDrig.........RkrvllvsillfsvftlasalatnvtqLlvlRflaglGlGgllpnliaLvsEyapkrfrat...vvglva.vGyaiGaavgg.llaal..lipafgWrslflvggiiplllllllikvLp 193
                 +lg+a++ + ++ ++  + ++G    lsa  +G+++G +++++ a ++           +rvl+ ++l  + + +++a  +++ +L+++Rf  g    g +p +  ++  + p  + +t   v+++ a  Gy iG + +g l++++  ++   gWr lfl+ g  ++ll l +  +Lp
  MMETSP1137-20121227|4524_1  90 ALGYALSFIDRSnLAFAELTMGHelQLSADGFGLAAGVFFSSYCAMQLPclytlavtdARRVLAACLLGWGCCATGMAAVNSLLSLCIVRFCLGFAEAGFYPGVLFFLTRWFPRSHVSTptqVLSVAAgGGYFIGXVSSGpLMSSFdgVLGLAGWRWLFLLQGSPAVLLGLWVLAHLP 267
                 56777777765326777777775224688889*************999999999999999*****************************************************999876222555544248****887762555544467889*********9777777777888887 PP

  == domain 2    score: -2.3 bits;  conditional E-value: 0.5
   TIGR00895  54 lGfllsagLiGmvlG..allfgplaDrigRkrvllvsillfsvftlas 99 
                 +G+ ++ gL+ + +G   l +g ++ r  R+ vl  + l +s ft  +
  MMETSP1137-20121227|4524_1 472 FGCTGTGGLMMLCAGiaMLGSGNASSRAPRRAVLSGTALGLSGFTHTL 519
                 677777777766666323567899********************9765 PP

>> TIGR03469  HpnB: hopene-associated glycosyltransferase HpnB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.1   9.4e-06    0.0065     166     217 ..     171     222 ..     163     227 .. 0.90

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 9.4e-06
   TIGR03469 166 dlvslmvrLrceslweklliPafvfffqkLYPfrwvndpkrkvaaaaGGciL 217
                 +l sl +   c  ++e  + P  +ff ++ +P ++v  p++ ++ aaGG   
  MMETSP1137-20121227|4524_1 171 SLLSLCIVRFCLGFAEAGFYPGVLFFLTRWFPRSHVSTPTQVLSVAAGGGYF 222
                 6888888889**************************************9765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (670 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        99  (0.0241346); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.51u 0.17s 00:00:00.68 Elapsed: 00:00:00.64
# Mc/sec: 1381.76
//
Query:       MMETSP1137-20121227|4525_1  [L=441]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00073   15.5   0.0      0.033   10.0   0.0    2.1  2  TIGR00870 trp: transient-receptor-potential calcium channel protein


Domain annotation for each model (and alignments):
>> TIGR00870  trp: transient-receptor-potential calcium channel protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.0   0.0   8.1e-06     0.033     121     162 ..      42      87 ..      25     101 .. 0.79
   2 !    3.3   0.0    0.0009       3.7     178     218 ..     221     261 ..     212     268 .. 0.89

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 8.1e-06
   TIGR00870 121 ndestseftkgitalilAihkqnyeivklLlekgasve....arak 162
                 n+ +++  + g t+l+ A+ +     v++Ll++ga+ +      ++
  MMETSP1137-20121227|4525_1  42 NALKKGGLFDGRTPLHCAASRGHGDAVSALLARGADMKlidkRGCT 87 
                 5667777899**************************9866543344 PP

  == domain 2    score: 3.3 bits;  conditional E-value: 0.0009
   TIGR00870 178 gespLnlaaclasesivsllsedpAdiltadslgntllhll 218
                 g+ pL  aa+ + ++iv+ l++  Ad++ ad+ g t l l+
  MMETSP1137-20121227|4525_1 221 GRNPLHCAAARGHADIVAGLLQLCADPSIADKRGCTALMLA 261
                 899****************************9998877665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (441 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        97  (0.023647); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.14s 00:00:00.48 Elapsed: 00:00:00.33
# Mc/sec: 1763.85
//
Query:       MMETSP1137-20121227|4526_1  [L=30]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (30 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        31  (0.00755729); expected 82.0 (0.02)
Passed bias filter:                       30  (0.00731351); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.15s 00:00:00.25 Elapsed: 00:00:00.28
# Mc/sec: 136.54
//
Query:       MMETSP1137-20121227|4527_1  [L=38]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (38 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        49  (0.0119454); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.18s 00:00:00.28 Elapsed: 00:00:00.31
# Mc/sec: 161.79
//
Query:       MMETSP1137-20121227|4528_1  [L=101]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        39  (0.00950756); expected 82.0 (0.02)
Passed bias filter:                       37  (0.00901999); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.39
# Mc/sec: 341.82
//
Query:       MMETSP1137-20121227|4529_1  [L=97]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (97 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        42  (0.0102389); expected 82.0 (0.02)
Passed bias filter:                       42  (0.0102389); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.15s 00:00:00.28 Elapsed: 00:00:00.34
# Mc/sec: 376.56
//
Query:       MMETSP1137-20121227|4530_1  [L=143]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (143 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       137  (0.0333983); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.13s 00:00:00.30 Elapsed: 00:00:00.30
# Mc/sec: 629.15
//
Query:       MMETSP1137-20121227|4531_1  [L=414]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (414 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       126  (0.0307167); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.16s 00:00:00.44 Elapsed: 00:00:00.49
# Mc/sec: 1115.17
//
Query:       MMETSP1137-20121227|4532_1  [L=352]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (352 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        91  (0.0221843); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.16s 00:00:00.44 Elapsed: 00:00:00.26
# Mc/sec: 1786.93
//
Query:       MMETSP1137-20121227|4533_1  [L=693]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.058   10.3   0.0      0.091    9.7   0.0    1.2  1  TIGR01537 portal_HK97: phage portal protein, HK97 family


Domain annotation for each model (and alignments):
>> TIGR01537  portal_HK97: phage portal protein, HK97 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.0   2.2e-05     0.091     164     237 ..     183     261 ..     169     267 .. 0.78

  Alignments for each domain:
  == domain 1    score: 9.7 bits;  conditional E-value: 2.2e-05
   TIGR01537 164 kkkffknglrpkgvvkvaqsdlseeareklreefekaysgaknagrvllleagadyeels.......lspedaqlleskkl 237
                 +++ + +++   g +++aqs+++e+are++ +e+++a +g+ n     +le  +   + +       l++ daql e++  
  MMETSP1137-20121227|4533_1 183 ANGARSGAAARPGALERAQSSSNEQARERVASEVSEAAKGFGN--GXSVLESKLSAAQAAlatgvpaLDAADAQLHETMSS 261
                 44444455666789***************************55..777788877777777779999999999999998865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (693 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       173  (0.0421745); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.15s 00:00:00.55 Elapsed: 00:00:00.50
# Mc/sec: 1829.37
//
Query:       MMETSP1137-20121227|4534_1  [L=148]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (148 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        62  (0.0151146); expected 82.0 (0.02)
Passed bias filter:                       41  (0.00999512); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.18s 00:00:00.35 Elapsed: 00:00:00.37
# Mc/sec: 527.96
//
Query:       MMETSP1137-20121227|4535_1  [L=65]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (65 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        30  (0.00731351); expected 82.0 (0.02)
Passed bias filter:                       28  (0.00682594); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:00.36
# Mc/sec: 238.31
//
Query:       MMETSP1137-20121227|4536_1  [L=90]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (90 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        99  (0.0241346); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.13s 00:00:00.27 Elapsed: 00:00:00.34
# Mc/sec: 349.38
//
Query:       MMETSP1137-20121227|4537_1  [L=239]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (239 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        60  (0.014627); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.18s 00:00:00.39 Elapsed: 00:00:00.68
# Mc/sec: 463.90
//
Query:       MMETSP1137-20121227|4538_1  [L=816]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (816 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       211  (0.0514383); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.33s 00:00:00.64 Elapsed: 00:00:01.09
# Mc/sec: 988.10
//
Query:       MMETSP1137-20121227|4539_1  [L=195]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      0.001   17.6   0.5     0.0016   17.0   0.3    1.2  1  TIGR01384 TFS_arch: transcription factor S


Domain annotation for each model (and alignments):
>> TIGR01384  TFS_arch: transcription factor S
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.3   3.9e-07    0.0016       2      84 ..      23     113 ..      22     124 .. 0.62

  Alignments for each domain:
  == domain 1    score: 17.0 bits;  conditional E-value: 3.9e-07
   TIGR01384   2 fcpkcgslmvpkeG......kykctkcGyekekkkkeklkvtekv..kekkketilveeeeletlptkiecpkcknkey.ywlkqtrrdepe 84 
                  c  cg+++ pke       + +c++c  e++ +++  ++v++      + ++     ++ + +  ++ ec  c+++e  ++    ++de  
  MMETSP1137-20121227|4539_1  23 ICAECGNMLHPKEDrlrrklRRVCRNCKREDDAESNL-VNVHDLRpeSSSVEHGADTIKDPTLPRASNTECNACGHTESvFFQAPMKNDEGM 113
                 59*********88744443345799999999863332.3333222002223334444556667777999*******9861555556777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (195 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       114  (0.0277913); expected 82.0 (0.02)
Passed bias filter:                      103  (0.0251097); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.15u 0.19s 00:00:00.34 Elapsed: 00:00:00.31
# Mc/sec: 830.25
//
Query:       MMETSP1137-20121227|4542_1  [L=538]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.9e-44  148.5  23.9    3.7e-13   46.8   1.4    4.1  4  TIGR00990 3a0801s09: mitochondrial precursor proteins import receptor
    2.3e-30  103.0  13.8    5.4e-09   32.3   0.4    4.3  4  TIGR02917 PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein
    7.9e-23   79.0  25.1    2.5e-06   25.0   2.1    7.4  7  TIGR02521 type_IV_pilW: type IV pilus biogenesis/stability protein PilW
      1e-19   68.5  20.7    2.8e-05   21.7   0.5    4.6  4  TIGR02552 LcrH_SycD: type III secretion low calcium response chaperone LcrH/SycD
    0.00012   18.2  21.4     0.0016   14.5   0.9    4.0  4  TIGR03939 PGA_TPR_OMP: poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA
  ------ inclusion threshold ------
      0.084    9.3   2.8       0.57    6.6   0.1    2.6  3  TIGR03772 anch_rpt_subst: anchored repeat ABC transporter, substrate-binding protein
        8.9    4.3  18.6       0.29    9.1   0.2    5.3  5  TIGR03504 FimV_Cterm: FimV C-terminal domain


Domain annotation for each model (and alignments):
>> TIGR00990  3a0801s09: mitochondrial precursor proteins import receptor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.2   0.5   6.4e-14   3.7e-11     107     254 ..      33     182 ..      28     185 .. 0.84
   2 !   37.3   2.0   4.8e-13   2.8e-10     122     211 ..     173     263 ..     148     270 .. 0.85
   3 !   39.1   0.4   1.3e-13   7.6e-11     121     208 ..     295     383 ..     283     393 .. 0.92
   4 !   46.8   1.4   6.3e-16   3.7e-13     127     215 ..     417     506 ..     397     512 .. 0.89

  Alignments for each domain:
  == domain 1    score: 40.2 bits;  conditional E-value: 6.4e-14
   TIGR00990 107 lpeidessvvnlseeerkkyaaklkekGnkayrnkdfdkaielyskalllked.Pvyysnraacynaladlekvvedttaaleldpdyvkalnrranaydqlgkyadalldltassliddfrdeqsaqaverllkkfaeska..keiletk 254
                 ++  d ++++ + e+  k+    lke     ++n +++ a++  + al l e   v +snr++ y al +++k +ed+ + ++l+p++ k  +rr + + ++gk   a   l    +  d  ++  ++ +e  ++  ae+ a  +e le k
  MMETSP1137-20121227|4542_1  33 NGVDDSEKMLLFPESTIKAAVDTLKEVAIDDFKNEQYERAVKHLTVALSLDEKsHVLFSNRCTAYIALEQYDKAMEDADECIRLQPNWAKGYLRRGSVFFRMGKLEMAEHVLK-EGIELDPTNDALKKELEAVMNAIAEKMArqRESLECK 182
                 56667777778888888999999***************************87527*************************************************988876554.5677777777788888888888886544115666665 PP

  == domain 2    score: 37.3 bits;  conditional E-value: 4.8e-13
   TIGR00990 122 erkkyaaklkekGnkayrnkdfdkaielyskalllked.Pvyysnraacynaladlekvvedttaaleldpdyvkalnrranaydqlgkya 211
                  r++ +++ ke+  +++++++++ +++l  ka+ l ++  ++ysnraa y al +++k ++d+   ++l+p + k   r+ +a  ++ k a
  MMETSP1137-20121227|4542_1 173 ARQRESLECKERAIEYFNEQNYKASVDLLRKAIKLDPEnHIFYSNRAAAYMALEQYDKALADAEDCIRLQPTWAKGYSRKGAALFRMDKLA 263
                 467778999**************************975279***************************************99976666655 PP

  == domain 3    score: 39.1 bits;  conditional E-value: 1.3e-13
   TIGR00990 121 eerkkyaaklkekGnkayrnkdfdkaielyskalllked.Pvyysnraacynaladlekvvedttaaleldpdyvkalnrranaydqlg 208
                  +rk+ ++++ke+  +a++ ++f+ a +  + a++l ++  v+ysnraa y a+ ++++ ++d+ + ++l+p + k   r+a+ay  +g
  MMETSP1137-20121227|4542_1 295 AQRKEESLEFKERAIEAFNVQNFKRAEQHLTSAIELDPEnHVFYSNRAAAYMAMEKFDRALKDANECVRLQPTWAKGYSRQAAAYLSMG 383
                 589999******************************97527********************************************8877 PP

  == domain 4    score: 46.8 bits;  conditional E-value: 6.3e-16
   TIGR00990 127 aaklkekGnkayrnkdfdkaielyskalllk.edPvyysnraacynaladlekvvedttaaleldpdyvkalnrranaydqlgkyadall 215
                 +++lk++  +a++ +d++ka+e  + a+ l   + v++snr+  y a+ ++ek +ed+ + ++l+p + k   rra+a  +lg  + a l
  MMETSP1137-20121227|4542_1 417 SLALKDAATEAFKAQDYEKAVEDLTAAISLDsSNQVFFSNRSVAYTAMQQYEKALEDADECVRLQPTWAKGYSRRAAAKFHLGDLQAAKL 506
                 689*************************9972578************************************************9988866 PP

>> TIGR02917  PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.1   0.0   2.8e-09   1.6e-06     409     498 ..      65     154 ..      50     177 .. 0.68
   2 !   32.3   0.4   9.2e-12   5.4e-09     413     500 ..     194     281 ..     181     311 .. 0.88
   3 !   29.7   0.3   5.5e-11   3.2e-08     412     513 ..     317     417 ..     306     431 .. 0.80
   4 !   23.0   0.8   5.8e-09   3.4e-06     411     505 ..     431     525 ..     422     528 .. 0.88

  Alignments for each domain:
  == domain 1    score: 24.1 bits;  conditional E-value: 2.8e-09
   TIGR02917 409 aqGdkseaiadLetAvkldpellraellLilsyLrsgefdkalaaakklekkqpdnaslynllgaiylgkkdlakAreafekALkiepdf 498
                  + + + a+++L+ A+ ld+++         +y+  ++ dka+  a++ +  qp+ a+ y  +g++ +  ++l+ A++ +++  +++p +
  MMETSP1137-20121227|4542_1  65 KNEQYERAVKHLTVALSLDEKSHVLFSNRCTAYIALEQYDKAMEDADECIRLQPNWAKGYLRRGSVFFRMGKLEMAEHVLKEGIELDPTN 154
                 344455677777777777755555555556677777777777777777777777777777777777777777777777777777777654 PP

  == domain 2    score: 32.3 bits;  conditional E-value: 9.2e-12
   TIGR02917 413 kseaiadLetAvkldpellraellLilsyLrsgefdkalaaakklekkqpdnaslynllgaiylgkkdlakAreafekALkiepdffp 500
                  +  +  L++A+kldpe        + +y+  ++ dkala a+  +  qp  a+ y  +ga+++   +la+Ar afek L++++d+ +
  MMETSP1137-20121227|4542_1 194 YKASVDLLRKAIKLDPENHIFYSNRAAAYMALEQYDKALADAEDCIRLQPTWAKGYSRKGAALFRMDKLAGARDAFEKGLELDRDNPT 281
                 454677899*********9999999************************************************************976 PP

  == domain 3    score: 29.7 bits;  conditional E-value: 5.5e-11
   TIGR02917 412 dkseaiadLetAvkldpellraellLilsyLrsgefdkalaaakklekkqpdnaslynllgaiylgkkdlakAreafekALkiepdffpAlanLArldlqek 513
                  k+ a ++L+ A++ldpe        + +y+  ++fd+al+ a++    qp  a+ y   +a+yl  +dl  Area    L +epd+ +   +L r++++e 
  MMETSP1137-20121227|4542_1 317 FKR-AEQHLTSAIELDPENHVFYSNRAAAYMAMEKFDRALKDANECVRLQPTWAKGYSRQAAAYLSMGDLPAAREACMRGLDLEPDNTQVKEELRRVEIAES 417
                 444.88889999999988888888888889999999999999999999999999999999999999999999999999999999988888888877777664 PP

  == domain 4    score: 23.0 bits;  conditional E-value: 5.8e-09
   TIGR02917 411 GdkseaiadLetAvkldpellr..aellLilsyLrsgefdkalaaakklekkqpdnaslynllgaiylgkkdlakAreafekALkiepdffpAlanL 505
                  d ++a++dL++A+ ld+      ++++ + ++++  + +kal  a++    qp  a+ y  ++a+ +  +dl+ A+ a+ kA  +ep +++  a L
  MMETSP1137-20121227|4542_1 431 QDYEKAVEDLTAAISLDSSNQVffSNRSVAYTAMQ--QYEKALEDADECVRLQPTWAKGYSRRAAAKFHLGDLQAAKLAYSKAWDLEPTNLKTKADL 525
                 57889************865542278888888876..688**************************************************9987776 PP

>> TIGR02521  type_IV_pilW: type IV pilus biogenesis/stability protein PilW
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.0     0.077        45      36      64 ..      58      86 ..      46      94 .. 0.78
   2 !   17.5   0.0   8.6e-07    0.0005      39      99 ..      95     155 ..      91     158 .. 0.95
   3 !   25.0   2.1   4.3e-09   2.5e-06      35     128 ..     182     275 ..     163     301 .. 0.88
   4 !   15.9   0.3   2.6e-06    0.0015      38      96 ..     308     366 ..     295     370 .. 0.89
   5 !   18.2   0.1   5.2e-07   0.00031      36     101 ..     340     405 ..     336     408 .. 0.96
   6 !    4.6   0.3    0.0077       4.5      38      75 ..     424     461 ..     410     463 .. 0.83
   7 !   18.4   0.4   4.7e-07   0.00027      38      98 ..     458     518 ..     453     522 .. 0.95

  Alignments for each domain:
  == domain 1    score: 1.3 bits;  conditional E-value: 0.077
   TIGR02521 36 qLaleYleqgdlekAkenlekAleldpkd 64
                + a+  ++++++e+A + l  Al ld k+
  MMETSP1137-20121227|4542_1 58 EVAIDDFKNEQYERAVKHLTVALSLDEKS 86
                55666688999999999999999998875 PP

  == domain 2    score: 17.5 bits;  conditional E-value: 8.6e-07
   TIGR02521  39 leYleqgdlekAkenlekAleldpkdadanlalAlyyqqlgelekAeesfrkAltlkpnng 99 
                 ++Y++ ++++kA e+ ++ + l+p+ a+ +l ++ ++ ++g+le Ae+  +++++l+p n 
  MMETSP1137-20121227|4542_1  95 TAYIALEQYDKAMEDADECIRLQPNWAKGYLRRGSVFFRMGKLEMAEHVLKEGIELDPTND 155
                 78*******************************************************9885 PP

  == domain 3    score: 25.0 bits;  conditional E-value: 4.3e-09
   TIGR02521  35 vqLaleYleqgdlekAkenlekAleldpkdadanlalAlyyqqlgelekAeesfrkAltlkpnngdvlNNYGtFLcqqkkyeeAeqqfeaAied 128
                  + a+eY++++++++  + l kA++ldp++   ++ +A +y+ l + +kA +  ++ ++l+p  ++ +   G+ L+++ k   A   fe+ +e 
  MMETSP1137-20121227|4542_1 182 KERAIEYFNEQNYKASVDLLRKAIKLDPENHIFYSNRAAAYMALEQYDKALADAEDCIRLQPTWAKGYSRKGAALFRMDKLAGARDAFEKGLEL 275
                 4679********************************************************************************9999998764 PP

  == domain 4    score: 15.9 bits;  conditional E-value: 2.6e-06
   TIGR02521  38 aleYleqgdlekAkenlekAleldpkdadanlalAlyyqqlgelekAeesfrkAltlkp 96 
                 a+e ++ +++++A + l  A+eldp++   ++ +A +y+ + + ++A +  ++ ++l+p
  MMETSP1137-20121227|4542_1 308 AIEAFNVQNFKRAEQHLTSAIELDPENHVFYSNRAAAYMAMEKFDRALKDANECVRLQP 366
                 566678899************************************99988888888877 PP

  == domain 5    score: 18.2 bits;  conditional E-value: 5.2e-07
   TIGR02521  36 qLaleYleqgdlekAkenlekAleldpkdadanlalAlyyqqlgelekAeesfrkAltlkpnngdv 101
                 + a++Y++ +++++A ++ ++ + l+p  a+ ++  A +y ++g+l +A e+  ++l l+p+n++v
  MMETSP1137-20121227|4542_1 340 NRAAAYMAMEKFDRALKDANECVRLQPTWAKGYSRQAAAYLSMGDLPAAREACMRGLDLEPDNTQV 405
                 6799***********************************************************997 PP

  == domain 6    score: 4.6 bits;  conditional E-value: 0.0077
   TIGR02521  38 aleYleqgdlekAkenlekAleldpkdadanlalAlyy 75 
                 a+e ++++d+ekA e+l  A+ ld++++   + + ++y
  MMETSP1137-20121227|4542_1 424 ATEAFKAQDYEKAVEDLTAAISLDSSNQVFFSNRSVAY 461
                 5666899999***********99999987776666666 PP

  == domain 7    score: 18.4 bits;  conditional E-value: 4.7e-07
   TIGR02521  38 aleYleqgdlekAkenlekAleldpkdadanlalAlyyqqlgelekAeesfrkAltlkpnn 98 
                  ++Y + +++ekA e+ ++ + l+p  a+ ++ +A +  +lg+l++A+ ++ kA  l+p n
  MMETSP1137-20121227|4542_1 458 SVAYTAMQQYEKALEDADECVRLQPTWAKGYSRRAAAKFHLGDLQAAKLAYSKAWDLEPTN 518
                 579******************************************************9988 PP

>> TIGR02552  LcrH_SycD: type III secretion low calcium response chaperone LcrH/SycD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   0.1   1.1e-07   6.7e-05      21     133 ..      56     165 ..      50     172 .. 0.88
   2 !   21.7   0.5   4.7e-08   2.8e-05      24     124 ..     184     284 ..     168     294 .. 0.94
   3 !   20.6   0.5   1.1e-07   6.3e-05      22     130 ..     305     413 ..     289     420 .. 0.91
   4 !   16.2   1.8   2.4e-06    0.0014      24     119 ..     423     518 ..     416     531 .. 0.88

  Alignments for each domain:
  == domain 1    score: 20.5 bits;  conditional E-value: 1.1e-07
   TIGR02552  21 iYalAYnlyqqgkyeeAeklFqlLaaldpteakywlgLaaclqalkeyeeAiaaYalaaaldlddprpvyhaaecllalgekeeAlkaLklaieiaeekeeyselkeraeaml 133
                 + ++A   +++ +ye+A+k  ++   ld  ++  +     ++ al++y++A++  + +  l+++ ++ +++++ +++ +g+ e+A+  Lk  ie++  ++   +lk++ ea++
  MMETSP1137-20121227|4542_1  56 LKEVAIDDFKNEQYERAVKHLTVALSLDEKSHVLFSNRCTAYIALEQYDKAMEDADECIRLQPNWAKGYLRRGSVFFRMGKLEMAEHVLKEGIELDPTND---ALKKELEAVM 165
                 5567778888889999999999888899888888888899999*****************************************************9888...7777777765 PP

  == domain 2    score: 21.7 bits;  conditional E-value: 4.7e-08
   TIGR02552  24 lAYnlyqqgkyeeAeklFqlLaaldpteakywlgLaaclqalkeyeeAiaaYalaaaldlddprpvyhaaecllalgekeeAlkaLklaieiaeekeeyse 124
                  A + +++ +y+ ++ l +  + ldp ++ +    aa+++al++y++A+a  + +  l++  ++ + + +  l+ +++ + A++a++  +e+++++++y  
  MMETSP1137-20121227|4542_1 184 RAIEYFNEQNYKASVDLLRKAIKLDPENHIFYSNRAAAYMALEQYDKALADAEDCIRLQPTWAKGYSRKGAALFRMDKLAGARDAFEKGLELDRDNPTYXS 284
                 677889999****************************************************************************************9975 PP

  == domain 3    score: 20.6 bits;  conditional E-value: 1.1e-07
   TIGR02552  22 YalAYnlyqqgkyeeAeklFqlLaaldpteakywlgLaaclqalkeyeeAiaaYalaaaldlddprpvyhaaecllalgekeeAlkaLklaieiaeekeeyselkerae 130
                  + A ++++  ++++Ae+  +  + ldp ++ +    aa+++a++++++A++    ++ l++  ++ + + a  +l +g+   A++a  + +++  ++++ +e  +r+e
  MMETSP1137-20121227|4542_1 305 KERAIEAFNVQNFKRAEQHLTSAIELDPENHVFYSNRAAAYMAMEKFDRALKDANECVRLQPTWAKGYSRQAAAYLSMGDLPAAREACMRGLDLEPDNTQVKEELRRVE 413
                 567889999***************************************************************************************9999888777776 PP

  == domain 4    score: 16.2 bits;  conditional E-value: 2.4e-06
   TIGR02552  24 lAYnlyqqgkyeeAeklFqlLaaldpteakywlgLaaclqalkeyeeAiaaYalaaaldlddprpvyhaaecllalgekeeAlkaLklaieiaeek 119
                 +A +++++ +ye+A++  ++ + ld  ++ ++   ++++ a+++ye+A++  + ++ l++  ++ + ++a  ++ lg+ + A+ a   a+++   +
  MMETSP1137-20121227|4542_1 423 AATEAFKAQDYEKAVEDLTAAISLDSSNQVFFSNRSVAYTAMQQYEKALEDADECVRLQPTWAKGYSRRAAAKFHLGDLQAAKLAYSKAWDLEPTN 518
                 577889999999999999999999999999999999999999999999999999999999999999999999999999999999999999987755 PP

>> TIGR03939  PGA_TPR_OMP: poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.0     0.021        12     446     498 ..      70     122 ..      61     162 .. 0.63
   2 !    6.6   1.3   0.00068       0.4      96     193 ..     188     285 ..     156     307 .. 0.76
   3 !   14.5   0.9   2.8e-06    0.0016      98     202 ..     313     419 ..     299     430 .. 0.81
   4 !    5.3   2.3    0.0017      0.99      98     200 ..     429     531 ..     418     535 .. 0.80

  Alignments for each domain:
  == domain 1    score: 1.7 bits;  conditional E-value: 0.021
   TIGR03939 446 rrAeqllkkaeslepdslsaergqaetaldlqewrqaealiddlvaryPedkq 498
                 +rA + l+ a sl+++s  +  ++  ++++l+++++a + +d+    +P++++
  MMETSP1137-20121227|4542_1  70 ERAVKHLTVALSLDEKSHVLFSNRCTAYIALEQYDKAMEDADECIRLQPNWAK 122
                 45556666666666666666666666666666666666666666666666544 PP

  == domain 2    score: 6.6 bits;  conditional E-value: 0.00068
   TIGR03939  96 aRnekqwdkAlelyrkllqrdPknpdlllGlaltladagkdeeAlkalkelkerfpsdaerlealaYvlraaedsldalaaiqqalrlePdnkellke 193
                 + ne++++ ++ l rk+++ dP+n    +  a +    +++++Al+ ++     +p+ a+ ++ ++ +l + ++ ++a  a ++ l+l+ dn+++   
  MMETSP1137-20121227|4542_1 188 YFNEQNYKASVDLLRKAIKLDPENHIFYSNRAAAYMALEQYDKALADAEDCIRLQPTWAKGYSRKGAALFRMDKLAGARDAFEKGLELDRDNPTYXSX 285
                 56888999999999999999999999998888888888999999988888888888888888878777777777777777777777777777766655 PP

  == domain 3    score: 14.5 bits;  conditional E-value: 2.8e-06
   TIGR03939  98 nekqwdkAlelyrkllqrdPknpdlllGlaltladagkdeeAlkalkelkerfpsdaerlealaYvlraaedsldalaaiqqalrlePdnkellkel..veiltrlg 202
                 n ++++ A++   ++++ dP+n    +  a +   ++k ++Alk ++e +  +p+ a+ ++ +a ++ + +d  +a +a  + l+lePdn+++  el  vei+++l+
  MMETSP1137-20121227|4542_1 313 NVQNFKRAEQHLTSAIELDPENHVFYSNRAAAYMAMEKFDRALKDANECVRLQPTWAKGYSRQAAAYLSMGDLPAAREACMRGLDLEPDNTQVKEELrrVEIAESLA 419
                 67889999999999999999999999999999999999999999999999999999999999999999999999999999999999999999887761144555443 PP

  == domain 4    score: 5.3 bits;  conditional E-value: 0.0017
   TIGR03939  98 nekqwdkAlelyrkllqrdPknpdlllGlaltladagkdeeAlkalkelkerfpsdaerlealaYvlraaedsldalaaiqqalrlePdnkellkelveiltr 200
                 ++++++kA+e    +++ d++n+   +    + + ++++e+Al+ ++e +  +p+ a+ ++ +a +  +++d ++a  a+++a +leP+n +  + l  +l++
  MMETSP1137-20121227|4542_1 429 KAQDYEKAVEDLTAAISLDSSNQVFFSNRSVAYTAMQQYEKALEDADECVRLQPTWAKGYSRRAAAKFHLGDLQAAKLAYSKAWDLEPTNLKTKADLEHVLSE 531
                 5678888888888888889888888888888899999999999999999999999999999899999999999999999999999999887777777666665 PP

>> TIGR03772  anch_rpt_subst: anchored repeat ABC transporter, substrate-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0      0.46   2.7e+02     201     268 ..      36     104 ..      25     114 .. 0.63
   2 ?    6.6   0.1   0.00097      0.57     323     368 ..     190     233 ..     186     243 .. 0.84
   3 ?    2.0   0.0     0.024        14     337     368 ..     326     356 ..     312     382 .. 0.76

  Alignments for each domain:
  == domain 1    score: -2.3 bits;  conditional E-value: 0.46
   TIGR03772 201 dkgkpsaslaeqtltvavGv.ddrsvpelaaatv.ldeGhadlavdldeksltllgdpeGggiakqkvyd 268
                 d+ +    + e t++ av + ++ ++ ++ +++      h  +a  ldeks +l+++   + ia + +yd
  MMETSP1137-20121227|4542_1  36 DDSEKMLLFPESTIKAAVDTlKEVAIDDFKNEQYeRAVKHLTVALSLDEKSHVLFSNRCTAYIALE-QYD 104
                 444446677778888888762344555655444313346888888889999888888666656554.455 PP

  == domain 2    score: 6.6 bits;  conditional E-value: 0.00097
   TIGR03772 323 nvknakayvevirdklievdPeeaaayrenakaylarlerldkevr 368
                 n +n ka v+++r k i+ dPe+   y++ a+ay+a le+ dk + 
  MMETSP1137-20121227|4542_1 190 NEQNYKASVDLLR-KAIKLDPENHIFYSNRAAAYMA-LEQYDKALA 233
                 77899*******9.569*****************96.788887665 PP

  == domain 3    score: 2.0 bits;  conditional E-value: 0.024
   TIGR03772 337 klievdPeeaaayrenakaylarlerldkevr 368
                 + ie dPe+   y++ a+ay+a +e+ d+ ++
  MMETSP1137-20121227|4542_1 326 SAIELDPENHVFYSNRAAAYMA-MEKFDRALK 356
                 56899***************86.666666655 PP

>> TIGR03504  FimV_Cterm: FimV C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.1      0.87   5.1e+02       7      19 ..      95     107 ..      92     109 .. 0.85
   2 ?   -0.7   0.0      0.58   3.4e+02      12      27 ..     134     149 ..     130     160 .. 0.84
   3 ?   -0.2   0.7      0.39   2.3e+02       5      18 ..     218     231 ..     217     233 .. 0.87
   4 ?    3.7   0.2     0.024        14       5      19 ..     341     355 ..     340     361 .. 0.89
   5 ?    9.1   0.2    0.0005      0.29       5      20 ..     375     390 ..     375     391 .. 0.94

  Alignments for each domain:
  == domain 1    score: -1.3 bits;  conditional E-value: 0.87
   TIGR03504   7 kaYiemGDkegAr 19 
                 +aYi++   ++A 
  MMETSP1137-20121227|4542_1  95 TAYIALEQYDKAM 107
                 69*****999996 PP

  == domain 2    score: -0.7 bits;  conditional E-value: 0.58
   TIGR03504  12 mGDkegArelLeEVie 27 
                 mG++e A  +L+E ie
  MMETSP1137-20121227|4542_1 134 MGKLEMAEHVLKEGIE 149
                 999999*999999655 PP

  == domain 3    score: -0.2 bits;  conditional E-value: 0.39
   TIGR03504   5 LAkaYiemGDkegA 18 
                 +A+aY+++   ++A
  MMETSP1137-20121227|4542_1 218 RAAAYMALEQYDKA 231
                 79*******99999 PP

  == domain 4    score: 3.7 bits;  conditional E-value: 0.024
   TIGR03504   5 LAkaYiemGDkegAr 19 
                 +A+aY++m + + A 
  MMETSP1137-20121227|4542_1 341 RAAAYMAMEKFDRAL 355
                 7*********99995 PP

  == domain 5    score: 9.1 bits;  conditional E-value: 0.0005
   TIGR03504   5 LAkaYiemGDkegAre 20 
                 +A+aY+ mGD+  Are
  MMETSP1137-20121227|4542_1 375 QAAAYLSMGDLPAARE 390
                 69*************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (538 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       244  (0.0594832); expected 82.0 (0.02)
Passed bias filter:                      123  (0.0299854); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.68u 0.24s 00:00:00.92 Elapsed: 00:00:00.64
# Mc/sec: 1109.53
//
Query:       MMETSP1137-20121227|4543_1  [L=173]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (173 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        46  (0.011214); expected 82.0 (0.02)
Passed bias filter:                       42  (0.0102389); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.17s 00:00:00.33 Elapsed: 00:00:00.37
# Mc/sec: 617.14
//
Query:       MMETSP1137-20121227|4544_1  [L=661]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (661 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        81  (0.0197465); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.19s 00:00:00.61 Elapsed: 00:00:00.46
# Mc/sec: 1896.63
//
Query:       MMETSP1137-20121227|4545_1  [L=806]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (806 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       103  (0.0251097); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.47u 0.15s 00:00:00.62 Elapsed: 00:00:00.54
# Mc/sec: 1970.06
//
Query:       MMETSP1137-20121227|4546_1  [L=319]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (319 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        50  (0.0121892); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.17s 00:00:00.42 Elapsed: 00:00:00.31
# Mc/sec: 1358.21
//
Query:       MMETSP1137-20121227|4547_1  [L=1324]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1324 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       161  (0.0392491); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.77u 0.17s 00:00:00.94 Elapsed: 00:00:00.54
# Mc/sec: 3236.18
//
Query:       MMETSP1137-20121227|4548_1  [L=731]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   5.9e-252  835.5   1.7   1.7e-169  563.0   0.3    2.9  2  TIGR01815 TrpE-clade3: anthranilate synthase
    2.7e-52  176.1   0.0    8.1e-52  174.6   0.0    1.7  1  TIGR00564 trpE_most: anthranilate synthase component I
    6.9e-45  151.4   0.0    1.3e-24   84.3   0.0    2.1  2  TIGR01823 PabB-fungal: aminodeoxychorismate synthase
    1.1e-44  151.3   0.0    1.4e-44  150.9   0.0    1.1  1  TIGR01820 TrpE-arch: anthranilate synthase component I
    2.2e-40  136.8   0.0    3.5e-40  136.2   0.0    1.2  1  TIGR00565 trpE_proteo: anthranilate synthase component I
    3.5e-37  126.3   0.0    5.9e-37  125.6   0.0    1.2  1  TIGR01824 PabB-clade2: aminodeoxychorismate synthase, component I
    1.7e-35  120.3   0.0    2.8e-35  119.6   0.0    1.3  1  TIGR00566 trpG_papA: glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase
    8.5e-32  108.4   0.0    1.2e-31  107.9   0.0    1.2  1  TIGR00553 pabB: aminodeoxychorismate synthase, component I
    3.8e-21   73.2   0.0    7.6e-21   72.2   0.0    1.5  1  TIGR00888 guaA_Nterm: GMP synthase (glutamine-hydrolyzing), N-terminal domain
    1.5e-15   54.9   0.0    2.5e-15   54.1   0.0    1.3  1  TIGR01368 CPSaseIIsmall: carbamoyl-phosphate synthase, small subunit
    7.9e-15   52.7   0.0    1.2e-14   52.1   0.0    1.2  1  TIGR00543 isochor_syn: isochorismate synthase
    1.5e-13   48.2   0.0    2.1e-13   47.7   0.0    1.2  1  TIGR03494 salicyl_syn: salicylate synthase
  ------ inclusion threshold ------
      0.033   11.8   0.1        1.8    6.1   0.0    2.4  2  TIGR01855 IMP_synth_hisH: imidazole glycerol phosphate synthase, glutamine amidotransferase subunit


Domain annotation for each model (and alignments):
>> TIGR01815  TrpE-clade3: anthranilate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  563.0   0.3  5.3e-172  1.7e-169       1     466 [.      61     520 ..      61     524 .. 0.95
   2 !  269.3   0.0   3.6e-83   1.1e-80     504     708 ..     525     729 ..     521     730 .. 0.95

  Alignments for each domain:
  == domain 1    score: 563.0 bits;  conditional E-value: 5.3e-172
   TIGR01815   1 yrtkGgvvvtrratevk.letaleevvdalderrGallsssyeypGrykrwalgfvdppvalsasGrtlriealnerGevllpviaealkkvedlakle.eaarrvtasvkspdevlaeeerskqpsvftvlravldlfaseedellGlyGafgydlafqfeaieqklerpddqrdlvlylpdelvvvdyyaakaflveydfitaagstegleadgedepyrsdt..siepqadhkpGeyaklvekakeafrrGdlfevvpgqkffeaceaapsevferlkainpspyeffvnlGrgeylvgaspemfvrve....GrrvetcpisGtikrGddaiddaaqilkllnskkdeaeltmctdvdrndksrvcepGsvkviGrrqielysrlihtvdhveGrlrdeldaldaflshawavtvtGapkraalqfiekteksprrwyGGav..GrlgfnGdlntGltlrtirlkdgiaevr 466
                 y+t+Ggv+v   + e++  ++  +e+v++ld +rG l+ ssye+pGry rw +gf dpp+ l ++ r + i aln rGevl+p++   lk+  +l +l+ e+a  + +sv+  ++ ++eeers+q s+f+v+ra+++lf ++++++lGlyG+fgydl+fqfe+++   +r   qrdlvlylpde++v+d  +  a+ ++y+f  +   t gl++ g++e y +++  + +++ dh  Ge+ak v  ake f+ G+lfevv +q+f e+c ++psevf+rl+  npspy+f++nlG+ eylvgaspemfvrve    G r etcpisGti+rG da++da++i+ +l+ kk+e+eltmctdvdrndksr+c  Gsv viGrrqie+ysrlihtvdhveG lrd++da+dafl h+wavtvtG  +                  GGav  G  g+   l tG tlrt+ +kdg+a++r
  MMETSP1137-20121227|4548_1  61 YTTRGGVRVHCDVSELEdAQKPYDELVERLDTHRGCLFESSYEFPGRYARWTMGFCDPPLVLESTRRDFVISALNSRGEVLIPAVHSVLKDHTALLTLQlESAACIRGSVRPVETSFTEEERSRQFSIFSVVRALTELFGCDDEPQLGLYGSFGYDLTFQFEPVRPFQQRDLSQRDLVLYLPDEFLVIDIHSRTARSLKYEFTYKGKGTLGLPRVGASEAYSPKAesELPARRDHSAGEFAKKVLRAKEEFKVGNLFEVVLSQTFTEPCPQSPSEVFKRLRRRNPSPYGFIINLGKTEYLVGASPEMFVRVEhdrkGWRCETCPISGTIRRGRDALEDAENIKTILSDKKEESELTMCTDVDRNDKSRICRAGSVSVIGRRQIEMYSRLIHTVDHVEGYLRDGFDAMDAFLVHTWAVTVTGXAQA----------------VGGAVcrGARGLAAXLXTGXTLRTVHIKDGVAQIR 520
                 89**********99986267889*******************************************************************9998876662677899*******************************************************************************************************************87651167899*******************************************************************************75555889******************************************************************************************************8653................36776446678999*******************99 PP

  == domain 2    score: 269.3 bits;  conditional E-value: 3.6e-83
   TIGR01815 504 akeesavakvgeGkrillvdhedsfvhtlanylrqtGasvttlrhsvaeelldeerpdlvvlspGpGrpkdfdvketikaalardlpvfGvclGlqglveafGGeldvlaepvhGkasrirvl.epdvlfaglpeeltvGryhslfarsdrlpkelkvtaesedgvimaiehrklpvaavqfhpesiltlaGeaGlalienvvdkl 708
                 a++e+a+++ +   +illvdh+dsfvhtlanylrqtGa vttlr ++ e+ l++ +p l vlspGpG pkdf++ +ti+  l++ +p+fGvclGlqg+ve fGG+l+vl++p+hGk+ +i +  ep+ +fag+p+e+ vGryhsl++ +++ p  l+vtae++dgvim++eh  lp+ avqfhpesilt   + G++++ n   kl
  MMETSP1137-20121227|4548_1 525 ATTEAAATEAACEANILLVDHQDSFVHTLANYLRQTGAQVTTLRFGFPESELERLKPTLCVLSPGPGCPKDFKLSDTIEMMLKHRIPLFGVCLGLQGIVEHFGGQLGVLPYPQHGKPGNIVLAdEPGTVFAGVPKEFQVGRYHSLYSLKEKHPSCLRVTAETADGVIMGVEHTSLPIGAVQFHPESILTR-TDLGIQMLVNAATKL 729
                 566777777788899*******************************************************************************************************998753789*************************************************************95.69******9987775 PP

>> TIGR00564  trpE_most: anthranilate synthase component I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  174.6   0.0   2.6e-54   8.1e-52      92     373 ..     207     482 ..     174     486 .. 0.89

  Alignments for each domain:
  == domain 1    score: 174.6 bits;  conditional E-value: 2.6e-54
   TIGR00564  92 ggavGylgydtvrlveklkeeaedelelpdlllllvetvivfDhvekkvilienarteaersaeeeaaarleellaelqkelekavkaleekkesftsnvekeeyeekvakakeyikaGdifqvvlSqrleakveakpfelYrkLRtvNPSpylyyldledfe.lvgsSPEllvkvk....gkrvetrPiAGtrkRGatkeeDealeeeLladeKerAEHlmLvDLaRNDigkvaklgsvevkellkiekyshvmHivSeVeGelkdeltavDalraalPaGTlsGA 373
                  g+ G +gyd+   +e++++ ++ +l+  dl+l+l ++++v D  ++++  ++++ t++++ +      r+ +     +++ ++++    e++ +   + +  e+++kv +ake+ k G++f vvlSq ++ ++ ++p e++++LR+ NPSpy ++++l  +e lvg+SPE++v+v+    g r et Pi Gt +RG++  eD+ + + +l+d+Ke  E +m  D+ RND ++++++gsv+v    +ie ys ++H v +VeG l+d+++a+Da+     a T++G 
  MMETSP1137-20121227|4548_1 207 LGLYGSFGYDLTFQFEPVRPFQQRDLSQRDLVLYLPDEFLVIDIHSRTARSLKYEFTYKGKGTL--GLPRVGA-----SEAYSPKA----ESELPARRDHSAGEFAKKVLRAKEEFKVGNLFEVVLSQTFTEPCPQSPSEVFKRLRRRNPSPYGFIINLGKTEyLVGASPEMFVRVEhdrkGWRCETCPISGTIRRGRDALEDAENIKTILSDKKEESELTMCTDVDRNDKSRICRAGSVSVIGRRQIEMYSRLIHTVDHVEGYLRDGFDAMDAFLVHTWAVTVTGX 482
                 5889*************************************************99999888422..3333333.....33333333....3445555666889********************************************************997549***********986544459***************************************************************************************************995 PP

>> TIGR01823  PabB-fungal: aminodeoxychorismate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.9   0.0   3.1e-21   9.7e-19     472     628 ..     299     458 ..     289     470 .. 0.87
   2 !   84.3   0.0     4e-27   1.3e-24       5     192 ..     537     716 ..     533     729 .. 0.83

  Alignments for each domain:
  == domain 1    score: 64.9 bits;  conditional E-value: 3.1e-21
   TIGR01823 472 dyakavkaCqeeleaGdsyelCLtdetlvvlpaevsqdwelykrlrklnPaafsgfvrlkhvk.llsssPekflevdrds...rlklkPikGtvkkeedm..slekarkiLksekelgenlmilDLirnDLyelvkkgdvrveellsveeharvyqlvsvvka 628
                 ++ak+v + +ee++ G+ +e+ L  +t+ + p + s + e++krlr++nP+++   ++l++   l+ +sPe f+ v++d    r++  Pi Gt++++ d     e+ + iL  +ke +e+ m  D+ rnD   +++ g+v v    ++e ++r    v +v +
  MMETSP1137-20121227|4548_1 299 EFAKKVLRAKEEFKVGNLFEVVLS-QTF-TEPCPQS-PSEVFKRLRRRNPSPYGFIINLGKTEyLVGASPEMFVRVEHDRkgwRCETCPISGTIRRGRDAleDAENIKTILSDKKEESELTMCTDVDRNDKSRICRAGSVSVIGRRQIEMYSRLIHTVDHVEG 458
                 688999999************997.555.5666667.48********************999757899********988644479***********99842234455779********************************************999999987 PP

  == domain 2    score: 84.3 bits;  conditional E-value: 4e-27
   TIGR01823   5 rlnvLfiDayDsftynvvallekaldvrvsvitvhsDkldddllellqlfdaivvGPGPGdPnvakdvgilsevfelanldevPvlGiCLGfqslcLaqGadierlplplhGqvsevktsda..aifegvss.vkstryhsLyankesidsllalilledeedqilmsvkakkkPifGvqyhPesvkseke 192
                   n+L++D  Dsf + + + l ++    ++v+t+ +  ++ +l  l +     v+ PGPG P   k +  ++ + +      +P++G+CLG+q ++ + G +++ lp+p+hG+  ++ ++d   ++f gv + +++ ryhsLy  ke   s  + +++e   d ++m v+++  Pi  vq+hPes+ +  +
  MMETSP1137-20121227|4548_1 537 EANILLVDHQDSFVHTLANYLRQTG---AQVTTLRFGFPESELERLKPT--LCVLSPGPGCPKDFKLSDTIEMMLKHR----IPLFGVCLGLQGIVEHFGGQLGVLPYPQHGKPGNIVLADEpgTVFAGVPKeFQVGRYHSLYSLKEKHPS-CLRVTAE-TADGVIMGVEHTSLPIGAVQFHPESILTRTD 716
                 679***************9999875...46*********9998665554..589********7777666666666655....************************************9996447999*9656*************99999.3445555.566788*******************977655 PP

>> TIGR01820  TrpE-arch: anthranilate synthase component I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  150.9   0.0   4.5e-47   1.4e-44     175     367 ..     285     482 ..     170     486 .. 0.87

  Alignments for each domain:
  == domain 1    score: 150.9 bits;  conditional E-value: 4.5e-47
   TIGR01820 175 ekkeaeleslaekeefeeavekakekifeGdifqvvlSrklelrldldplelYaklreiNPSPYmyllefgd.raivGaSPEtlvrve....krtveinPiAGtapRgkseeeDeelakelLsdeKerAEHvmLvDLaRNDvrkvsesgsvkvsefmkvlkyshvqHieSevvgtLkkeadafdalkAvfPAGtlsGa 367
                 ++ e   +++++  ef + v +ake+ + G++f vvlS++ +  + ++p e++++lr+ NPSPY ++++ g+  ++vGaSPE++vrve    + + e+ Pi Gt++Rg++  eD e  k +Lsd+Ke  E +m  D+ RND  +++++gsv+v +  +++ ys+  H + +v g L++  da+da+     A t++G 
  MMETSP1137-20121227|4548_1 285 AESELPARRDHSAGEFAKKVLRAKEEFKVGNLFEVVLSQTFTEPCPQSPSEVFKRLRRRNPSPYGFIINLGKtEYLVGASPEMFVRVEhdrkGWRCETCPISGTIRRGRDALEDAENIKTILSDKKEESELTMCTDVDRNDKSRICRAGSVSVIGRRQIEMYSRLIHTVDHVEGYLRDGFDAMDAFLVHTWAVTVTGX 482
                 334444555566889*******************************************************97257************954434479********************************************************************************************999****996 PP

>> TIGR00565  trpE_proteo: anthranilate synthase component I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  136.2   0.0   1.1e-42   3.5e-40      50     412 ..     127     482 ..      96     487 .. 0.87

  Alignments for each domain:
  == domain 1    score: 136.2 bits;  conditional E-value: 1.1e-42
   TIGR00565  50 divtikalsnnGeallkkldaalkal..veavqsenalvlr..flkvkklldedakllsasvfdalrllkslkqkpkepealllgGlfsydlvanfedlpqlkakndnvpdfifylaenlividhkeksveikaalfaereekqvaiakldlkeaqkskkadfvpkvsaasreveanlsdeefegvvkalkkeikkGeifqvvpsrrfslecpetla.ayyqlkksnPsPymfylk.dedfilfGasPesalk..ydaesrqleiyPiaGtrprGkdadGnidrdldsrlelelrldhkeraehlmlvdlarndlarvcksgkryvaellkvdrysnvmhlvsrvvGelrkeldalhayracmnmGtlsGa 412
                     i al++ Ge l+  +++ lk    + + q e a  +r    +v+    e+ +  + s+f  +r l +l     ep  l l G f ydl  +fe++  ++ ++ +  d ++yl ++++vid + ++++     f  + +  +   +   +ea   k+   +p  +        + s  ef + v+  k+e k+G++f vv+s+ f  +cp++ +  + +l++ nPsPy f ++  +   l GasPe  ++  +d +  + e  Pi+Gt  rG+da  +      +     +  d ke++e  m  d+ rnd +r+c++g+  v    +++ ys ++h v  v G lr++ da+ a+     + t++G 
  MMETSP1137-20121227|4548_1 127 RDFVISALNSRGEVLIPAVHSVLKDHtaLLTLQLESAACIRgsVRPVETSFTEEERSRQFSIFSVVRALTELFGCDDEP-QLGLYGSFGYDLTFQFEPVRPFQQRDLSQRDLVLYLPDEFLVIDIHSRTARSLKYEFTYKGKGTLGLPRVGASEAYSPKAESELPARR--------DHSAGEFAKKVLRAKEEFKVGNLFEVVLSQTFTEPCPQSPSeVFKRLRRRNPSPYGFIINlGKTEYLVGASPEMFVRveHDRKGWRCETCPISGTIRRGRDALED------AENIKTILSDKKEESELTMCTDVDRNDKSRICRAGSVSVIGRRQIEMYSRLIHTVDHVEGYLRDGFDAMDAFLVHTWAVTVTGX 482
                 566799*****************86644566677776666533789*****************************9999.788889*******************************************999999999988888877777777777766666666544........56779********************************876626889*************944556799*****98771145566689*************98653......333335668***************************************************************999988888885 PP

>> TIGR01824  PabB-clade2: aminodeoxychorismate synthase, component I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  125.6   0.0   1.9e-39   5.9e-37       3     277 ..     209     481 ..     208     486 .. 0.87

  Alignments for each domain:
  == domain 1    score: 125.6 bits;  conditional E-value: 1.9e-39
   TIGR01824   3 llgllaydvareleaildlkteekglpvlallryeaavaldeeeqivavaeaeaekegafataadalaavaaatslaspdvgplaadlealidraayetavkrikdyikaGdvfQaNlsrrltariaaevdplalfealraanpapyailleepgvd.vvsaSPElllkre....grevqtrPIaGTrargadlaeDealaaeLlaadKdrAEhvmivDLeRNDLgrvcetGtvevpellavesyaevlHlvSrVtgrLregleladlleAvFPggsiTG 277
                 l g + yd++ + e++   ++++    +l l+ ++ ++++d +++ ++  + e + +g  + +  ++ a +a+ ++a+ + +  + d +      ++ ++v r+k+  k G++f + ls+ +t +      p ++f++lr +np+py  +++  +++ +v aSPE+++++e    g   +t PI GT +rg+d  eD+ +++++l+++K+  E  m  D+ RND +r+c++G+v+v   +++e y+ ++H v +V+g Lr+g++++d++     + ++TG
  MMETSP1137-20121227|4548_1 209 LYGSFGYDLTFQFEPVRPFQQRDLSQRDLVLYLPDEFLVIDIHSRTARSLKYEFTYKGKGTLGLPRVGASEAYSPKAESELPARR-DHS----AGEFAKKVLRAKEEFKVGNLFEVVLSQTFTEP--CPQSPSEVFKRLRRRNPSPYGFIINLGKTEyLVGASPEMFVRVEhdrkGWRCETCPISGTIRRGRDALEDAENIKTILSDKKEESELTMCTDVDRNDKSRICRAGSVSVIGRRQIEMYSRLIHTVDHVEGYLRDGFDAMDAFLVHTWAVTVTG 481
                 5788999*******99999999999999999999999999999777777777777776666666666666666666555333333.333....46899***************************..55668*****************9999877659*********8652222669******************************************************************************************999999999998 PP

>> TIGR00566  trpG_papA: glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  119.6   0.0     9e-38   2.8e-35       2     188 ..     540     724 ..     539     728 .. 0.90

  Alignments for each domain:
  == domain 1    score: 119.6 bits;  conditional E-value: 9e-38
   TIGR00566   2 vllidnydsftynlvqlleelgaevvvkrndsltlqeieallpllsivisPGPctPdeaaisslelie.hlaGklPilGvClGhqalaqafGadvvraekvkhGkvseiehnga..avfaglfnPdalkatryhslvveaetldtllevtaleeeeieimairhrdlpleGvqfhPesils..elGkellan 188
                 +ll+d  dsf + l ++l + ga+v+  r   +  +e+e+l+p l  v+sPGP+ P++  +s  + ie  l  ++P++GvClG q +   fG+++  +   +hGk  +i + ++  +vfag+  P+ ++++ryhsl    e+ +++l vta +     im++ h  lp+  vqfhPesil+  +lG ++l n
  MMETSP1137-20121227|4548_1 540 ILLVDHQDSFVHTLANYLRQTGAQVTTLRF-GFPESELERLKPTL-CVLSPGPGCPKDFKLS--DTIEmMLKHRIPLFGVCLGLQGIVEHFGGQLGVLPYPQHGKPGNIVLADEpgTVFAGV--PKEFQVGRYHSLYSLKEKHPSCLRVTAETADG-VIMGVEHTSLPIGAVQFHPESILTrtDLGIQMLVN 724
                 9***********************998876.67889*********.9***********9999..555415789************************************9999744677776..777***********************999888.9*********************9733679999887 PP

>> TIGR00553  pabB: aminodeoxychorismate synthase, component I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  107.9   0.0   3.8e-34   1.2e-31      31     241 ..     257     471 ..     209     485 .. 0.81

  Alignments for each domain:
  == domain 1    score: 107.9 bits;  conditional E-value: 3.8e-34
   TIGR00553  31 kllrllvferveaeeaeaveaeseaaaeeqallseieveitraeyaeaikkvqeelkaGdvYqanltqqleatldgdplalyrklrkeqpapfsaflelgek.avlslSpElFlsvdgs....eletkPiKGTlprgadpeeDraqasaLaeseKdraEnlmivDLlRnDlgRiaevgsvkvdelfevetyptvhqlvstvkarlreeltlsdllr 241
                 +l + ++++ + +     v a+++ + ++++ l+ ++ + ++ e+a+++ + +ee k G+ +++ l+q ++  + ++p +++++lr+++p+p++  ++lg++  ++  SpE+F++v+++    + et Pi GT+ rg d+ eD++ ++++ +++K+ +E  m +D  RnD +Ri+++gsv+v    ++e y+ + + v +v++ lr+  ++ d++ 
  MMETSP1137-20121227|4548_1 257 SLKYEFTYKGKGTLGLPRVGASEAYSPKAESELP-ARRDHSAGEFAKKVLRAKEEFKVGNLFEVVLSQTFTEPCPQSPSEVFKRLRRRNPSPYGFIINLGKTeYLVGASPEMFVRVEHDrkgwRCETCPISGTIRRGRDALEDAENIKTILSDKKEESELTMCTDVDRNDKSRICRAGSVSVIGRRQIEMYSRLIHTVDHVEGYLRDGFDAMDAFL 471
                 3444455555555556666666666666666666.67788999*******************************************************998626889*******99755335679********************************************************************************99988887765 PP

>> TIGR00888  guaA_Nterm: GMP synthase (glutamine-hydrolyzing), N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.2   0.0   2.4e-23   7.6e-21       1     181 [.     540     726 ..     540     730 .. 0.90

  Alignments for each domain:
  == domain 1    score: 72.2 bits;  conditional E-value: 2.4e-23
   TIGR00888   1 ilvldfgsqYaqliaRrlrelgvyselvpatttleeikevepkgiilsGgPesvkaenaekvdekifelgvPvlGiCyGmqllakalGgeveraekreygka.elevlded.elfkglekelkvWmsh..gDkvkelPegfkvlaksencpvaalkkeekklyGvqfhPe..vthtekGkellenfv 181
                 il++d +  +++ +a  lr++g +   + +  +++e++  +p+  +ls gP   k+ + +++ e++++  +P++G+C+G+q +++ +Gg+ +     ++gk  ++ + de  ++f+g++ke++v   h  +   ++ P+  +v+a+++   +  +++++ ++  vqfhPe   t+t+ G ++l n +
  MMETSP1137-20121227|4548_1 540 ILLVDHQDSFVHTLANYLRQTGAQVTTLRFGFPESELERLKPTLCVLSPGPGCPKDFKLSDTIEMMLKHRIPLFGVCLGLQGIVEHFGGQLGVLPYPQHGKPgNIVLADEPgTVFAGVPKEFQVGRYHslYSLKEKHPSCLRVTAETADGVIMGVEHTSLPIGAVQFHPEsiLTRTDLGIQMLVNAA 726
                 899************************************************************************************************98625555555459***********7766215666789*********************************44467788999998865 PP

>> TIGR01368  CPSaseIIsmall: carbamoyl-phosphate synthase, small subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.1   0.0     8e-18   2.5e-15     176     341 ..     538     710 ..     507     716 .. 0.79

  Alignments for each domain:
  == domain 1    score: 54.1 bits;  conditional E-value: 8e-18
   TIGR01368 176 lrvvvidl..GvKenilreLvkrgvevtvvpadtsaeeikklnpdgillsnGPGdPaaveeaietvkklleakiPifGIclGhqllalalgaktyklkfGhrGaNhpvkdlktgrveitsqNHgyavdees....lkeeele..vthvnlnDgtveglehkelpvfsvQyHPea 341
                 ++++++d    + ++  + L ++g++vt +   ++ +e+++l+p   +ls GPG P++ +   +t++ +l+++iP+fG+clG q +   +g++   l + ++G+   +   ++    ++    ++ v +      lke++ +      +  Dg + g+eh++lp+ +vQ+HPe+
  MMETSP1137-20121227|4548_1 538 ANILLVDHqdSFVHTLANYLRQTGAQVTTLRFGFPESELERLKPTLCVLSPGPGCPKDFK-LSDTIEMMLKHRIPLFGVCLGLQGIVEHFGGQLGVLPYPQHGKPGNIVLADEPGTVFAGVPKEFQVGRYHslysLKEKHPSclRVTAETADGVIMGVEHTSLPIGAVQFHPES 710
                 5666666522355778899***************************************96.789***************************************866665555555556666777887654323325555433003456789**********************7 PP

>> TIGR00543  isochor_syn: isochorismate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.1   0.0   3.9e-17   1.2e-14      83     249 ..     293     463 ..     239     474 .. 0.85

  Alignments for each domain:
  == domain 1    score: 52.1 bits;  conditional E-value: 3.9e-17
   TIGR00543  83 eeidkeawaeaveealeeirqgkleKvVLarelelklaedievaavleelrqqnkdaylFlleepkggvflGatPErLlsreke....eleteALAGtvkrsadkeedaklgekllkdeKnlrEhqlVvekirreLekice..slevsekpellklakvqHLytkikarlkke 249
                  +  + ++a++v  a ee++ g+l  vVL+++  ++   + ++++v+++lr++n+  y F+++ +k++ ++Ga+PE  +++e++    + et ++ Gt+ r+ d+ eda++ +  l d+K++ E  +  +  r++   ic+  s+ v  + ++ + +++ H   ++++ l ++
  MMETSP1137-20121227|4548_1 293 RDHSAGEFAKKVLRAKEEFKVGNLFEVVLSQT--FTEPCPQSPSEVFKRLRRRNPSPYGFIINLGKTEYLVGASPEMFVRVEHDrkgwRCETCPISGTIRRGRDALEDAENIKTILSDKKEESELTMCTDVDRNDKSRICRagSVSVIGRRQIEMYSRLIHTVDHVEGYLRDG 463
                 4567789**********************975..66688889*************************************988773333589************************************9998888888888733466666789999999999888888887766 PP

>> TIGR03494  salicyl_syn: salicylate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.7   0.0   6.8e-16   2.1e-13     158     343 ..     294     483 ..     187     492 .. 0.89

  Alignments for each domain:
  == domain 1    score: 47.7 bits;  conditional E-value: 6.8e-16
   TIGR03494 158 etdaseykervaaavaeiaagkYkkvilsRavelpaavDlpatlllgRrkntPvRsfllrlgekea.lGfsPelvlsvradgk...vvtePLaGtRaleegpeeakklkeeLlsdskeivehvisvkeaieeleevcepgtvvvedlmtvreRGsvqhLgstvsgqLaedkdawdafevLfPaitasGiP 343
                 +++a e+ ++v +a +e + g+   v+ls + + p      + +   Rr+n     f+++lg++e  +G sPe+ + v++d k     t P++Gt  +++++ e+++  + +lsd ke  e  +      ++ +++c  g+v v    ++       h    v g L ++ da+daf v   a+t +G  
  MMETSP1137-20121227|4548_1 294 DHSAGEFAKKVLRAKEEFKVGNLFEVVLSQTFTEPCPQSPSEVFKRLRRRNPSPYGFIINLGKTEYlVGASPEMFVRVEHDRKgwrCETCPISGTIRRGRDALEDAENIKTILSDKKEESELTMCTDVDRNDKSRICRAGSVSVIGRRQIEMYSRLIHTVDHVEGYLRDGFDAMDAFLVHTWAVTVTGXA 483
                 456679*******************************99999*********999********998537**********9987644479**************************************************************************************************9975 PP

>> TIGR01855  IMP_synth_hisH: imidazole glycerol phosphate synthase, glutamine amidotransferase subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   0.0    0.0058       1.8      61      86 ..     599     624 ..     592     629 .. 0.81
   2 ?    3.0   0.0     0.052        17     160     194 ..     685     724 ..     643     728 .. 0.58

  Alignments for each domain:
  == domain 1    score: 6.1 bits;  conditional E-value: 0.0058
   TIGR01855  61 ellaekvvkkkkpvlgiClGmQllfe 86 
                 + ++e + k++ p+ g+ClG+Q ++e
  MMETSP1137-20121227|4548_1 599 SDTIEMMLKHRIPLFGVCLGLQGIVE 624
                 45568889999***********7776 PP

  == domain 2    score: 3.0 bits;  conditional E-value: 0.052
   TIGR01855 160 dygekfvaavekdn..ivgvQFHPEk...SgktGlkllkn 194
                 +     +  ve+    i +vQFHPE      + G ++l n
  MMETSP1137-20121227|4548_1 685 ETADGVIMGVEHTSlpIGAVQFHPESiltRTDLGIQMLVN 724
                 44444555555544225689*****622235567777666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (731 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        98  (0.0238908); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                        21  (0.00511945); expected 4.1 (0.001)
Passed Fwd filter:                        13  (0.00316919); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.70u 0.20s 00:00:00.89 Elapsed: 00:00:00.68
# Mc/sec: 1418.88
//
Query:       MMETSP1137-20121227|4549_1  [L=331]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (331 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       125  (0.0304729); expected 82.0 (0.02)
Passed bias filter:                      105  (0.0255973); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.14s 00:00:00.40 Elapsed: 00:00:00.36
# Mc/sec: 1213.57
//
Query:       MMETSP1137-20121227|4550_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        52  (0.0126767); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.13s 00:00:00.26 Elapsed: 00:00:00.26
# Mc/sec: 269.05
//
Query:       MMETSP1137-20121227|4551_1  [L=70]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        76  (0.0185275); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.13s 00:00:00.26 Elapsed: 00:00:00.45
# Mc/sec: 205.32
//
Query:       MMETSP1137-20121227|4551_2  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        54  (0.0131643); expected 82.0 (0.02)
Passed bias filter:                       38  (0.00926377); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:00.31
# Mc/sec: 221.40
//
Query:       MMETSP1137-20121227|4552_1  [L=244]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (244 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       142  (0.0346173); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.10s 00:00:00.31 Elapsed: 00:00:00.41
# Mc/sec: 785.50
//
Query:       MMETSP1137-20121227|4553_1  [L=136]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (136 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        15  (0.00365675); expected 82.0 (0.02)
Passed bias filter:                       14  (0.00341297); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.15s 00:00:00.29 Elapsed: 00:00:00.30
# Mc/sec: 598.35
//
Query:       MMETSP1137-20121227|4554_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        48  (0.0117016); expected 82.0 (0.02)
Passed bias filter:                       40  (0.00975134); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.13s 00:00:00.24 Elapsed: 00:00:00.26
# Mc/sec: 269.05
//
Query:       MMETSP1137-20121227|4557_1  [L=449]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.5e-75  251.0   2.8    4.4e-75  250.7   1.9    1.1  1  TIGR00128 fabD: malonyl CoA-acyl carrier protein transacylase
    1.2e-56  190.1   3.6    1.5e-56  189.8   2.5    1.1  1  TIGR03131 malonate_mdcH: malonate decarboxylase, epsilon subunit
    1.3e-30  102.8   4.1    2.4e-30  102.0   2.8    1.3  1  TIGR02813 omega_3_PfaA: polyketide-type polyunsaturated fatty acid synthase PfaA


Domain annotation for each model (and alignments):
>> TIGR00128  fabD: malonyl CoA-acyl carrier protein transacylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  250.7   1.9   3.2e-78   4.4e-75       3     289 ..     146     439 ..     144     440 .. 0.96

  Alignments for each domain:
  == domain 1    score: 250.7 bits;  conditional E-value: 3.2e-78
   TIGR00128   3 ialvFPGqGsqavGmgkdlleeypiakelfdqAdeiLgydlkklvqegdaeelnktaytqPalyvvsvilyellkekg...glkPdfvaGHsLGEysAlvaagaldFedalklvkkRgelmqeavpegegamaavlgldeeqlakvleeake.....evvslanfnspeqvvisGtkkevekaeallkeagakralpLevsgafHselmkpaaeklkelleaiqfnkatvpvisnvdaeaetekdklkekLveqltspvrwtesveklaekGvtefaEvGpGkvLtGLikrikkd 289
                 +a++FPGqG q+vGm ++lle+   ++ lfd A++++gyd++ l+ +g++e+l+ t y+qPa+++vs++++e+ k++     +k +++aG sLGEy Alv agal+Fed+lklvk R+e m+ a+ ++ gama v g +++ l+++l+ a+      ++  +an   pe    sG k+ +e++ +++ ++gak+a  L+vsgafH+++m++a+e l++ l++ ++  ++++v snv+ +++   +++ke L +q+ +pv+w++  ++l   G  +++E GpGk L+ +++ri +d
  MMETSP1137-20121227|4557_1 146 VAVLFPGQGTQKVGMATKLLEDK-NVQALFDLASKVMGYDMVGLCAQGPQEKLDTTLYSQPAIFTVSLAAMEKAKKDApemLKKXKVAAGFSLGEYTALVFAGALSFEDGLKLVKARAEAMDAAAKADSGAMASVSGASDTVLQEALDAAAAkvgsgKKAYIANYMFPEGRTCSGDKAVLEALCDIVVKKGAKQAKMLAVSGAFHTPYMAKASEALAKALAEAEVTMPSIKVYSNVTGKPYSSVEEIKELLKRQMLEPVKWEQGTKHLLTLGCSQYVEPGPGKQLKAMMRRIDQD 439
                 799*******************9.89*************************************************99875557899********************************************************9999998876344466789***********************************************************************************************************************************987 PP

>> TIGR03131  malonate_mdcH: malonate decarboxylase, epsilon subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  189.8   2.5   1.1e-59   1.5e-56       1     276 [.     146     437 ..     146     448 .. 0.91

  Alignments for each domain:
  == domain 1    score: 189.8 bits;  conditional E-value: 1.1e-59
   TIGR03131   1 llllfpGQGsqragmlaelpdepkaaavleeasevlgadvlel...ddaealastrsaQllilaagvaaaraLkae....lekpsavAGySvGelaAavvagalefedaLkLvalRaelMeqavpeeyg.llavlGleeeevealvakag........vyiAiinaedqvViaGsraalsavaeaaraaGasrakrlaVsvpSHtkllakaaeelaealaeiplaapklpvlsaiearkvrdaaallddLaqqiakpvdWhavveaiaergarlvielgPGsaLtklanelf 276
                 +++lfpGQG q+ gm  +l ++++++a+++ as+v+g d+  l     +e+l  t   Q++i++ ++aa+++ k+     l+k +++AG+S+Ge+ A v agal+fed+LkLv++Rae+M++a++ ++g +++v+G ++  +++ + +a         +yiA+   ++    +G +a l+a+ + + + Ga++ak+laVs + Ht+ +aka+e+la+alae+++  p+++v s++ ++++ +++++ + L +q+ +pv+W + ++ +  +g +  +e gPG+ L  +++++ 
  MMETSP1137-20121227|4557_1 146 VAVLFPGQGTQKVGMATKLLEDKNVQALFDLASKVMGYDMVGLcaqGPQEKLDTTLYSQPAIFTVSLAAMEKAKKDapemLKKXKVAAGFSLGEYTALVFAGALSFEDGLKLVKARAEAMDAAAKADSGaMASVSGASDTVLQEALDAAAakvgsgkkAYIANYMFPEGRTCSGDKAVLEALCDIVVKKGAKQAKMLAVSGAFHTPYMAKASEALAKALAEAEVTMPSIKVYSNVTGKPYSSVEEIKELLKRQMLEPVKWEQGTKHLLTLGCSQYVEPGPGKQLKAMMRRID 437
                 589*************************************999764457899*******************99875122155689**************************************9997665999***886555544443333444*************************************************************************************************************************************99875 PP

>> TIGR02813  omega_3_PfaA: polyketide-type polyunsaturated fatty acid synthase PfaA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.0   2.8   1.7e-33   2.4e-30     642     880 ..     192     437 ..     137     447 .. 0.81

  Alignments for each domain:
  == domain 1    score: 102.0 bits;  conditional E-value: 1.7e-33
   TIGR02813 642 aqeealtntayaqsaiGvlsvgqyklltq.aG...fkadlvaGhsfGelsalcaaGvisdddylklaferGqamaassaeadaGvmyavilkvk....ksaevikncikdiegvsianynsptqlviaGasaaiqlaakalkekGfk.aiplpvsgafhtplvahaqkpfsaaidkakfnkpkvplysngtgklhkndakaikkalkdhilesvhfseeleaiyaaGarvfvefGpknilqklvenil 880
                   +e l  t+y+q+ai ++s++  +   + a     k  + aG s+Ge +al+ aG +s +d lkl  +r +am a+ a+ad+G m++v  + +    +  +  ++ + + +   iany  p+    +G  a  +   + + +kG k a  l vsgafhtp +a+a   +++a+ +a+ + p + +ysn tgk ++   ++ik+ lk  +le v++++  + +   G+  +ve Gp   l+ ++ +i 
  MMETSP1137-20121227|4557_1 192 GPQEKLDTTLYSQPAIFTVSLAAMEKAKKdAPemlKKXKVAAGFSLGEYTALVFAGALSFEDGLKLVKARAEAMDAA-AKADSGAMASVSGASDtvlqEALDAAAAKVGSGKKAYIANYMFPEGRTCSGDKAVLEALCDIVVKKGAKqAKMLAVSGAFHTPYMAKASEALAKALAEAEVTMPSIKVYSNVTGKPYSS-VEEIKELLKRQMLEPVKWEQGTKHLLTLGCSQYVEPGPGKQLKAMMRRID 437
                 3367899**************99876654143332478899*********************************875.67999*999987665511113445566678888999*******************************9934579*****************************************9975.789***********************************999988877765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (449 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       181  (0.0441248); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.44u 0.15s 00:00:00.59 Elapsed: 00:00:00.52
# Mc/sec: 1139.68
//
Query:       MMETSP1137-20121227|4559_1  [L=455]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (455 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        69  (0.0168211); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.15s 00:00:00.48 Elapsed: 00:00:00.42
# Mc/sec: 1429.88
//
Query:       MMETSP1137-20121227|4560_1  [L=162]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (162 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        28  (0.00682594); expected 82.0 (0.02)
Passed bias filter:                       26  (0.00633837); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.13s 00:00:00.29 Elapsed: 00:00:00.28
# Mc/sec: 737.32
//
Query:       MMETSP1137-20121227|4561_1  [L=857]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.4e-28   96.6   0.0    5.1e-28   96.0   0.0    1.2  1  TIGR02715 amido_AtzE: amidohydrolase, AtzE family
    1.5e-24   84.5   0.0      2e-24   84.0   0.0    1.1  1  TIGR00132 gatA: aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, A subunit
    5.6e-14   49.4   0.0    9.3e-14   48.6   0.0    1.3  1  TIGR02713 allophanate_hyd: allophanate hydrolase


Domain annotation for each model (and alignments):
>> TIGR02715  amido_AtzE: amidohydrolase, AtzE family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.0   0.0   3.7e-31   5.1e-28       3     249 ..     213     455 ..     211     474 .. 0.89

  Alignments for each domain:
  == domain 1    score: 96.0 bits;  conditional E-value: 3.7e-31
   TIGR02715   3 veiakavrsgkvsaravaeaalarikaadellnaftavtaeralaeaaridaelaaGkelgalagvPfavknlfdvaGlttlaGakinaelaPakrdatlvqrlkaaGavlvGalnmdeyaygfttenahyGatrnPhdltriaGGssGGsaaavaaglvplslGsdtnGsirvPaslCGvfGlkPtyGrlsrrgvfpfvesldhvGPlarsvedlalvydvlq.Gedakd.daiaareveptvpllsa 249
                  +ia  v+s  vs ++v++   +r+++   l   +t  + e ala+aa  da la G+ +g+l  +Pf +k+   ++ ++t  G  ++ ++ P +  +t++++l + Ga+ +  l m+  a g +t     G +  P  l+  +GGss Gs++a+a g +p+ +  +t Gsi  Pa+   v G  P yG  sr g+ ++++  dh+G  ar  +d+  +y+ ++ Ged+ d d+++   v+p + +ls+
  MMETSP1137-20121227|4561_1 213 LDIASLVQSRTVSCVDVVTTFRDRLEEYAFLGYMIT-PLYESALAKAAEYDALLADGTIIGQLMCIPFGMKDHHQIDEEPTSYGHILFYKQ-PQTIKSTVMAKLIEHGAIPLAKLSMGTLASGSVTG---WGEVYSPY-LNGNSGGSSCGSGSALAIGALPFVVSEETWGSIASPAANNLVSGHIPSYGGTSRGGAGLLASETDHIGFHARYLKDFGFIYNNMRtGEDPLDgDTVSVPXVNPKAVNLSD 455
                 588999999999999999999999988766555555.56899******************************************8887765.7788899************************9985...78899997.45569*****************************************************************************9965999987356777788888877765 PP

>> TIGR00132  gatA: aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, A subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.0   0.0   1.5e-27     2e-24       3     261 ..     217     471 ..     215     519 .. 0.88

  Alignments for each domain:
  == domain 1    score: 84.0 bits;  conditional E-value: 1.5e-27
   TIGR00132   3 ellkkkevsikevleeilerieavkdkinaflevtkekalkkakkldkkva.ke..kklagipiavKdniavkdiettcaSkiLenyvspydatVverlkeagaliiGktNlDEFamGsstetSafgvtknPeneervpGGSsgGsaaavaadlvplalgsDTGgSiRqPAsfcgvvGlKPtYGlvSRyGlvayasSldqiGilakkvedialvldvi.sgkDkkDstslevkveelleelkkdlkglkvgvvkelseesldk 261
                 +l+++++vs ++v++++ +r+e+    +  +++   e+al+ka+++d+ +a  +   +l+ ip+++Kd  ++ + +t+ +  +      + ++tV+ +l e+ga+ + k  +   a Gs t    +g +  P  + +  GGSs Gs+ a+a +  p+ ++ +T gSi  PA+   v G  P+YG  SR G   +as  d+iG+ a++ +d  ++ + + +g D  D  +++v+     + ++ +l  +kv +v+   e+ +d+
  MMETSP1137-20121227|4561_1 217 SLVQSRTVSCVDVVTTFRDRLEEYAF-LGYMITPLYESALAKAAEYDALLAdGTiiGQLMCIPFGMKDHHQIDEEPTSYGHILFYKQPQTIKSTVMAKLIEHGAIPLAKLSMGTLASGSVT---GWGEVYSPYLNGN-SGGSSCGSGSALAIGALPFVVSEETWGSIASPAANNLVSGHIPSYGGTSRGGAGLLASETDHIGFHARYLKDFGFIYNNMrTGEDPLDGDTVSVPXV---NPKAVNLSDIKVLIVEGDAEWVFDE 471
                 5788999*****************99.9********************9997444459***************999999877777777889*************************99977...5788888864443.7**************************************************************************99877369******99999763...3333346778887777777766665 PP

>> TIGR02713  allophanate_hyd: allophanate hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.6   0.0   6.8e-17   9.3e-14      31     218 ..     273     458 ..     247     490 .. 0.80

  Alignments for each domain:
  == domain 1    score: 48.6 bits;  conditional E-value: 6.8e-17
   TIGR02713  31 PLyGvpfavkdniDvaglpttaacPafaylpee.datvvaklraaGaivvGktnlDqFAtGLvGtRsPygavrnafdeeyisGGsssGsavavarGlvsfaLGtDtAGsGRvPAalnnlvGlkptkGlvsttGvvPAcrslDcvsvfaltvedAekvlril.aafdaeDaysrkaelpaaaalklpeklr 218
                  L+ +pf++kd   + + pt+ +   f  +p++ ++tv+akl++ Gai++ k  +   A G v   + +g+v + + +   sGGss Gs +a+a G+ +f +  +t Gs   PAa n + G  p+ G  s  G    +   D +   a+ ++d   +++ + +  d+ D  + +++ ++ +a +l++  +
  MMETSP1137-20121227|4561_1 273 QLMCIPFGMKDHHQIDEEPTSYGHILFYKQPQTiKSTVMAKLIEHGAIPLAKLSMGTLASGSV---TGWGEVYSPYLNG-NSGGSSCGSGSALAIGALPFVVSEETWGSIASPAANNLVSGHIPSYGGTSRGGAGLLASETDHIGFHARYLKDFGFIYNNMrTGEDPLDGDTVSVPXVNPKAVNLSDIKV 458
                 5899***********************9999865899*******************9998766...7899999988765.69*********************************99999***********99999999999999999999998888776624555555444444455555555555444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (857 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       103  (0.0251097); expected 82.0 (0.02)
Passed bias filter:                       99  (0.0241346); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.56u 0.13s 00:00:00.69 Elapsed: 00:00:00.79
# Mc/sec: 1431.83
//
Query:       MMETSP1137-20121227|4562_1  [L=408]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.4e-06   22.8  45.6      9e-05   18.1   8.2    2.5  2  TIGR02169 SMC_prok_A: chromosome segregation protein SMC
    0.00013   17.7  48.4     0.0091   11.6  21.2    2.1  2  TIGR02168 SMC_prok_B: chromosome segregation protein SMC
      0.005   13.6  25.1     0.0028   14.4   3.8    2.1  2  TIGR03794 NHLM_micro_HlyD: NHLM bacteriocin system secretion protein


Domain annotation for each model (and alignments):
>> TIGR02169  SMC_prok_A: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   8.2   6.6e-08     9e-05     367     502 ..       5     140 ..       1     168 [. 0.88
   2 !   11.1  17.0   8.7e-06     0.012     315     507 ..     158     346 ..     142     368 .. 0.72

  Alignments for each domain:
  == domain 1    score: 18.1 bits;  conditional E-value: 6.6e-08
   TIGR02169 367 leelraeleevdkeaaelreelkelkekleklkeelnelkreldrlleelkrleeelaelkaelerieekiaeleeeleelaeeikkaeqkleqlkedlekaekelrklkeeleklekelselerelaeleaqaka 502
                  +el+++++++++e  + + + ++    l + ke+ + l r ++ l+++ +r++ee + l  ++ ++e +   l+++l + ++ +++ ++++ + + + +++e+++r+l++  e++ ++l++++rela + + +  
  MMETSP1137-20121227|4562_1   5 KAELENKVKALEQELGTEKGHKNSFSSLLLQEKEKNDVLTRSNRELQDQVRRRDEEARCLCGDIIKLETENSSLNKDLSKQRALVSTCDWQICTDQIKINELEQKVRDLETGKEAVADNLTKAKRELAGAATLRAE 140
                 5788999999999999999999999999999999999999999999*********************************************************************************987654433 PP

  == domain 2    score: 11.1 bits;  conditional E-value: 8.7e-06
   TIGR02169 315 eeeledaeerlakaeaeidklkeeieelereieeekkereklkeelkelkeeleelraeleevdkeaaelreelkelkekleklkeelnelkreldrlleelkrleeelaelkaelerieekiaeleeeleelaeeikkaeqkleqlkedlekaekelrklkeeleklekelselerelaeleaqakaseees 507
                   ++++   + a     + +l+e++++le+++++e  ++e+l+++l++++++ ++l  + ++++++  +  ee    +  ++kl++e   l  +l+  +     +  +l+  + +++ +e+k++ le+++++++ ++ + ++    +    +k  +++r l e+l   ++++  ++ e+ + ea+a+ ++++ 
  MMETSP1137-20121227|4562_1 158 LLQAKNCSLQGAAN-RVRAELEEKATDLEGKLTTETLNKESLSSNLSQEEAKNDALTWNNQKLQEKVSRYDEEARCFRSDISKLERENRRLYCDLREQKGLVSSRGVQLHTNRIKITMLEQKVESLESDKKAVEVKVGETNKAKADA---AAKHADNIRTLWEKLLVKDNQIALVQAEVRHREAEASLVKSAF 346
                 44444444443333.3345788899999999*******************9999999999999999999999999999999999999999998888888888888888899999999999999999999999988887655433333...3334445555555555555555555555555555555554443 PP

>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.7  11.1   1.2e-05     0.016     327     493 ..       7     173 ..       1     180 [. 0.40
   2 !   11.6  21.2   6.6e-06    0.0091     692     935 ..     146     380 ..     132     407 .. 0.36

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 1.2e-05
   TIGR02168 327 eleskkeeleeelaeleeeleelkeelesleaeleeaeaeleelesrleeleeeleelrsevaeleeqlaslnaelerleaeleqleerrerlkqeieelekkleeaeaelkelqeeleeleeeleeleeelerleealeeleeeleeaeqalqkaeeelaqlqarl 493
                 ele+k + le+el + +  +++++  l +++++ + + +  +el+++++  +ee++ l  ++ +le + +sln++l++++a ++  + +    + +i+ele+k+ ++e+ +++++ +l++ ++el+ +++ ++++++al++   + ++    lq+++ +l+ +++r+
  MMETSP1137-20121227|4562_1   7 ELENKVKALEQELGTEKGHKNSFSSLLLQEKEKNDVLTRSNRELQDQVRRRDEEARCLCGDIIKLETENSSLNKDLSKQRALVSTCDWQICTDQIKINELEQKVRDLETGKEAVADNLTKAKRELAGAATLRAEVVRALQQELCHRDNSVALLQAKNCSLQGAANRV 173
                 23333333333333333333333333333333333334444444444444444444444444455555555555555555555555555554455555555555555555555555555555555544444444444444433333333333333333333333332 PP

  == domain 2    score: 11.6 bits;  conditional E-value: 6.6e-06
   TIGR02168 692 eekiaelekelkelekeleeleeeleklrkeleelerklselkkelerlekeveqleerlaqlekeleeleeereeleeeleeaeeelkeaeeeieeleaeieqlkeelkalrealseleaeltelkeeaaekeerleslekeiaalekeleeleeqieeleeeiesleaeieeleeeleeleeeleellkekasleealaelreeleelseelrelekkvkelereleelreklaqlelrlee 935
                 ++++   ++ ++ l+ ++ +l+ +++ +r+elee   k ++l+ +l +++ + e+l+++l+q+e+++  l+ + ++l+e+++  +ee+   +++i +le+e ++l  +l +++  +s+   +l++ +++++ +e+++esle++++a+e ++ e+++++++++++ +   ++i++l+e+l    ++++ +++e++++e++ + ++++ e   +++++le+k+   +r  ++l   la+ ++r  +
  MMETSP1137-20121227|4562_1 146 QQELCHRDNSVALLQAKNCSLQGAANRVRAELEE---KATDLEGKLTTETLNKESLSSNLSQEEAKNDALTWNNQKLQEKVSRYDEEARCFRSDISKLERENRRLYCDLREQKGLVSSRGVQLHTNRIKITMLEQKVESLESDKKAVEVKVGETNKAKADAAAKHA---DNIRTLWEKLLVKDNQIALVQAEVRHREAEASLVKSAFE---DKVKDLEQKLAMQKRHNDSLAFLLAEEKTRNGS 380
                 3333333333333333333333333333333333...233333334444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444443333333322...344444444444444444444444333333333333322...222222222222222222222222222222222 PP

>> TIGR03794  NHLM_micro_HlyD: NHLM bacteriocin system secretion protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   3.8   2.1e-06    0.0028     108     254 ..      34     199 ..      10     208 .. 0.74
   2 !    3.4   9.7    0.0047       6.4     109     253 ..     203     360 ..     193     367 .. 0.65

  Alignments for each domain:
  == domain 1    score: 14.4 bits;  conditional E-value: 2.1e-06
   TIGR03794 108 Lqe.qlekvrnfqvrekearekkflkskeaLeetigklreeeaaLsqevakqrqllsrklak.....lkrarillqqarkeqekrdeadkaeaey...............elqtkadeeeletvvaklkqadlqlasvaekeletvearikevreeieeleaklnlnt 254
                 Lqe ++++v     re + + ++  ++   L   i kl+ e+  L++ + kqr l+s    +     +k+ ++ ++  + e  k++ ad ++                  +lq++   +++   va l+ ++ +l++ a++   ++e + ++++ ++     + +  +
  MMETSP1137-20121227|4562_1  34 LQEkEKNDVLTRSNRELQDQVRRRDEEARCLCGDIIKLETENSSLNKDLSKQRALVSTCDWQictdqIKINELEQKVRDLETGKEAVADNLTKAKrelagaatlraevvrALQQELCHRDN--SVALLQAKNCSLQGAANRVRAELEEKATDLEGKLTTETLNKESLS 199
                 4440455677777777787888888888889999************************999944444444455555455555555555555544489999999999999999999999996..788888888899999999999999999999988876555555555 PP

  == domain 2    score: 3.4 bits;  conditional E-value: 0.0047
   TIGR03794 109 qeqlekvrnfqvrekearekkflkskea..LeetigklreeeaaLsqevakqrqllsrklaklkrarillqqarkeqekrdeadkaeaey........elqtkadeeel............etvvaklkqadlqlasvaekeletvearikevreeieeleaklnln 253
                  +++ k  +++ ++++ +ek     +ea   +  i kl+ e+  L   + +q+ l+s +  +l+  ri+++  +++ e+ +   ka            +        +             e++++k +q  l +a v+++e e   ++ +  + +++ le+kl+++
  MMETSP1137-20121227|4562_1 203 SQEEAKNDALTWNNQKLQEKVSRYDEEArcFRSDISKLERENRRLYCDLREQKGLVSSRGVQLHTNRIKITMLEQKVESLESDKKAVEVKvgetnkakA--------DAaakhadnirtlwEKLLVKDNQIALVQAEVRHREAEASLVK-SAFEDKVKDLEQKLAMQ 360
                 4444455556666666666655555554458999***********************999999888888776666554444444443333333333321........112233444555566666677888888887777777766555.45688899999998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (408 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       404  (0.0984885); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.54u 0.17s 00:00:00.71 Elapsed: 00:00:01.01
# Mc/sec: 533.18
//
Query:       MMETSP1137-20121227|4563_1  [L=282]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (282 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        85  (0.0207216); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.16s 00:00:00.38 Elapsed: 00:00:00.47
# Mc/sec: 791.93
//
Query:       MMETSP1137-20121227|4564_1  [L=82]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (82 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       119  (0.0290102); expected 82.0 (0.02)
Passed bias filter:                      108  (0.0263286); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.28
# Mc/sec: 373.21
//
Query:       MMETSP1137-20121227|4565_1  [L=100]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (100 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        95  (0.0231594); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.16s 00:00:00.32 Elapsed: 00:00:00.43
# Mc/sec: 306.95
//
Query:       MMETSP1137-20121227|4566_1  [L=446]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (446 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        60  (0.014627); expected 82.0 (0.02)
Passed bias filter:                       38  (0.00926377); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.16s 00:00:00.44 Elapsed: 00:00:00.45
# Mc/sec: 1308.16
//
Query:       MMETSP1137-20121227|4567_1  [L=137]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (137 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        66  (0.0160897); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.13s 00:00:00.29 Elapsed: 00:00:00.30
# Mc/sec: 602.75
//
Query:       MMETSP1137-20121227|4568_1  [L=123]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.033   10.8   0.0      0.042   10.4   0.0    1.1  1  TIGR02094 more_P_ylases: alpha-glucan phosphorylases


Domain annotation for each model (and alignments):
>> TIGR02094  more_P_ylases: alpha-glucan phosphorylases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0     1e-05     0.042     423     467 ..      20      64 ..      13      70 .. 0.85

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 1e-05
   TIGR02094 423 pvqlvfaGkaHPaDeeGkeli.qeivevskkpefrgkvvfledYdi 467
                 +v+ v +Gka P+D++ k++i ++ive s   ++r+    +e+Y++
  MMETSP1137-20121227|4568_1  20 RVRCVSTGKAIPKDKAIKRFIvRNIVEASALRDIREA-SCIENYQL 64 
                 68999************9975389****999999886.46799975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (123 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        90  (0.0219405); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.16u 0.18s 00:00:00.34 Elapsed: 00:00:00.34
# Mc/sec: 477.49
//
Query:       MMETSP1137-20121227|4569_1  [L=236]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (236 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       122  (0.0297416); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.16s 00:00:00.36 Elapsed: 00:00:00.28
# Mc/sec: 1112.48
//
Query:       MMETSP1137-20121227|4570_1  [L=262]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.7e-30  101.4   0.0    1.2e-29  101.0   0.0    1.1  1  TIGR00172 maf: septum formation protein Maf


Domain annotation for each model (and alignments):
>> TIGR00172  maf: septum formation protein Maf
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  101.0   0.0   2.9e-33   1.2e-29       2     184 ..      50     253 ..      49     254 .. 0.92

  Alignments for each domain:
  == domain 1    score: 101.0 bits;  conditional E-value: 2.9e-33
   TIGR00172   2 kkeliLaStSprRkelLeelgisfetavsefeEksnksedpreyVlrlakeKaqava...elladal..................iigaDtivildgrileKpktkeeakkflrklsgeevevlTavaLiksagrellteldetkvafkalseeeieeYvesgeplevaGafkieg.kgailiekiegdysnvvGLplekllklL 184
                 +  ++L+S S +R ++L  +gi fe+a ++++Ek  + +dp e+Vl++ k+Ka a+    e  +d+                   +i +D++v+ +g+ileKp++++ea++f+     +  e + +  + + a +  + ++d+ +v+f+ +s+e i++ +  g+   +aG+  +e      +i k+egd  +v GL+ +  ++lL
  MMETSP1137-20121227|4570_1  50 TR-IVLGSSSATRSAILTAMGIVFEVAKPNIDEKAIRFQDPAELVLAIGKAKATALLkdeEVQPDQAatthxskrgdefkrdgalLITSDQVVVCNGQILEKPEDEAEARRFIEGYGTHAAETVGSCIVTDAASGSQWAHVDVARVHFSPISDEAIDKLIVEGDVFYCAGGLMVEHpLVEKFITKMEGDIDTVQGLSSVTARRLL 253
                 44.9**************************************************964122455566599*******************************************************999999***99***************************************9736789***************977776665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (262 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       146  (0.0355924); expected 82.0 (0.02)
Passed bias filter:                      113  (0.0275475); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.24u 0.18s 00:00:00.42 Elapsed: 00:00:00.33
# Mc/sec: 1047.91
//
Query:       MMETSP1137-20121227|4571_1  [L=39]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (39 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        36  (0.00877621); expected 82.0 (0.02)
Passed bias filter:                       35  (0.00853242); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.23
# Mc/sec: 223.81
//
Query:       MMETSP1137-20121227|4572_1  [L=452]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00088   16.2   0.0     0.0015   15.5   0.0    1.3  1  TIGR00692 tdh: L-threonine 3-dehydrogenase


Domain annotation for each model (and alignments):
>> TIGR00692  tdh: L-threonine 3-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   3.6e-07    0.0015     151     194 ..     220     263 ..     216     294 .. 0.91

  Alignments for each domain:
  == domain 1    score: 15.5 bits;  conditional E-value: 3.6e-07
   TIGR00692 151 avdtvlesdlaGesvlvsGaGpiGllavavakaaGasqvivsdk 194
                  v ++l++dl+G+ v++sG+G + l+av      Ga +v vsd 
  MMETSP1137-20121227|4572_1 220 IVTAALSTDLSGKRVIISGSGNVSLFAVEKCLDMGAIPVSVSDS 263
                 58899**********************************99996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (452 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       125  (0.0304729); expected 82.0 (0.02)
Passed bias filter:                      111  (0.02706); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.17s 00:00:00.51 Elapsed: 00:00:00.41
# Mc/sec: 1455.10
//
Query:       MMETSP1137-20121227|4573_1  [L=260]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (260 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        86  (0.0209654); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.10s 00:00:00.32 Elapsed: 00:00:00.56
# Mc/sec: 602.06
//
Query:       MMETSP1137-20121227|4574_1  [L=330]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (330 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       123  (0.0299854); expected 82.0 (0.02)
Passed bias filter:                      107  (0.0260848); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.10s 00:00:00.37 Elapsed: 00:00:00.47
# Mc/sec: 926.73
//
Query:       MMETSP1137-20121227|4575_1  [L=238]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (238 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        53  (0.0129205); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.10s 00:00:00.31 Elapsed: 00:00:00.38
# Mc/sec: 826.67
//
Query:       MMETSP1137-20121227|4576_1  [L=135]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (135 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        75  (0.0182838); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.14s 00:00:00.30 Elapsed: 00:00:00.41
# Mc/sec: 434.60
//
Query:       MMETSP1137-20121227|4577_1  [L=218]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (218 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        71  (0.0173086); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.20s 00:00:00.40 Elapsed: 00:00:01.18
# Mc/sec: 243.84
//
Query:       MMETSP1137-20121227|4578_1  [L=329]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.16    8.2   8.3       0.22    7.7   5.7    1.2  1  TIGR02442 Cob-chelat-sub: cobaltochelatase subunit
        1.1    4.6  12.5        1.4    4.2   8.7    1.1  1  TIGR00927 2A1904: K+-dependent Na+/Ca+ exchanger


Domain annotation for each model (and alignments):
>> TIGR02442  Cob-chelat-sub: cobaltochelatase subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   5.7   0.00011      0.22     320     418 ..     182     268 ..     142     305 .. 0.41

  Alignments for each domain:
  == domain 1    score: 7.7 bits;  conditional E-value: 0.00011
   TIGR02442 320 ekeekkleekkeeakpd.eekedeseekekeeskkqeeeepgkddekeedekeeaeeeaesaeevalepagkifrvkllavskarargasGrrsktrsdk 418
                 ek+ek++e++kee+k++  e+e e+ee+e e++kk+++ + ++ d  ++d+ +++ + a+  ++++l++ +++ r ++ a +++r            +++
  MMETSP1137-20121227|4578_1 182 EKKEKEKEKEKEEEKKEgGEEEGEEEEEEGEKKKKEGKVTRDTLDGGRSDNGARNRACAR-CTSQDLHRVERSKRWHKEANKQTR------------ARR 268
                 111111111111111110111111112222222222233333333333333333333332.222222222222222222222222............112 PP

>> TIGR00927  2A1904: K+-dependent Na+/Ca+ exchanger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   8.7   0.00069       1.4     978    1003 ..     186     211 ..     174     271 .. 0.60

  Alignments for each domain:
  == domain 1    score: 4.2 bits;  conditional E-value: 0.00069
   TIGR00927  978 eeeeeeeeeeeeeeeeeeeeeeeeen 1003
                  +e+e+e+eee++e  eee eeeeee 
  MMETSP1137-20121227|4578_1  186 KEKEKEKEEEKKEGGEEEGEEEEEEG 211 
                  11111111111111111111111111 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (329 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       256  (0.0624086); expected 82.0 (0.02)
Passed bias filter:                      153  (0.0372989); expected 82.0 (0.02)
Passed Vit filter:                        27  (0.00658216); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.33u 0.14s 00:00:00.47 Elapsed: 00:00:00.56
# Mc/sec: 775.44
//
Query:       MMETSP1137-20121227|4579_1  [L=359]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (359 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        89  (0.0216967); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.17s 00:00:00.43 Elapsed: 00:00:00.38
# Mc/sec: 1246.95
//
Query:       MMETSP1137-20121227|4580_1  [L=84]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (84 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        56  (0.0136519); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.13s 00:00:00.26 Elapsed: 00:00:00.27
# Mc/sec: 410.63
//
Query:       MMETSP1137-20121227|4581_1  [L=483]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   4.7e-149  496.1  19.1    4.4e-87  291.1   1.4    2.0  2  TIGR03346 chaperone_ClpB: ATP-dependent chaperone protein ClpB
    1.8e-88  295.6  15.9    4.5e-56  188.4   1.2    2.1  2  TIGR03345 VI_ClpV1: type VI secretion ATPase, ClpV1 family
    2.6e-72  242.0   0.4    3.7e-55  185.2   0.0    2.1  2  TIGR02639 ClpA: ATP-dependent Clp protease ATP-binding subunit ClpA
    6.7e-05   19.7   0.2    0.00051   16.8   0.0    2.3  2  TIGR02928 TIGR02928: orc1/cdc6 family replication initiation protein
     0.0017   14.8   0.1     0.0027   14.1   0.1    1.2  1  TIGR00764 lon_rel: putative ATP-dependent protease
       0.01   13.7  12.3      0.013   13.3   0.7    3.2  2  TIGR03499 FlhF: flagellar biosynthesis protein FlhF


Domain annotation for each model (and alignments):
>> TIGR03346  chaperone_ClpB: ATP-dependent chaperone protein ClpB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  291.1   1.4   6.4e-90   4.4e-87       1     263 [.       6     270 ..       6     275 .. 0.97
   2 !  210.8   6.6   1.2e-65   8.4e-63     349     542 ..     288     483 .]     285     483 .] 0.96

  Alignments for each domain:
  == domain 1    score: 291.1 bits;  conditional E-value: 6.4e-90
   TIGR03346   1 ltekaqealaeaqslalekdhqeiepehllkalleqeeglv.aallekagvnvealkealekeleklpkvsgaggevslskelerllekaeklaqklgdefvsvellllalleekeea.kkllkeagvtkekleeaieevrggekvtdanaeekyealekyardlteraregkldPviGrdeeirrviqvlsrrtknnPvliGepGvGktaiveGlaqrivngdvPeslknkrllaldlgaliaGakyrGefeerlkavlkevek 263
                 +t+ + +al++a sla+e++h+  ep hl ++l+ + e+ v +++  k+gv+v+++++al+++l+k p+ s   ++v ++++l+++l++a+k+ +k+gd+ v+ ++lllal++e ++a  k lk+ g+ + ++++a+e++rgg+kv++++ae++yealeky++dl+++a egkldPviGrd+eirrviq+l+rrtknnPvl+GepGvGkta+veGlaqri+ +dvPe+l+n  l +ld+g+l+aGa +rGefeerlkavl ev++
  MMETSP1137-20121227|4581_1   6 FTDASVKALNDALSLAKEHGHALCEPLHLAAVLFGDGETAVgTRVCVKLGVEVTRVRDALHRALAKRPSQSPPPQNVGADSALRTVLDAASKAIKKTGDQLVAQDQLLLALYKEGNNAaVKELKHLGLVEGDVRKALEKMRGGRKVQSRTAESSYEALEKYGIDLVAQAAEGKLDPVIGRDDEIRRVIQILTRRTKNNPVLVGEPGVGKTAVVEGLAQRILANDVPEGLQNIALRTLDMGSLVAGASHRGEFEERLKAVLAEVAA 270
                 688999****************************988766527899*******************************************************************988876899********************************************************************************************************************************************986 PP

  == domain 2    score: 210.8 bits;  conditional E-value: 1.2e-65
   TIGR03346 349 keryevhhgvritdsalvaaatlshryitdrflPdkaidlideaaarlrmeidskPeeldeldrriiqlkierealkkekdeaskerleklekelaeleeesaeleekwkaekekiekvkkikeelekvklelekakregdlakaaelkygklpelekeleeaeekeke..ekkekllkeevteeeiaevvsrwtG 542
                  erye hhgvri+dsalvaaa ls ryit rflPdkaidlidea+a  r+++dskPe+ld+l+r+++ql+ie +al +ekd ask+rl++++k+la+l+ee a l++ w+ae+++ e++++++e l+ ++++ ++++r+gd+++aa+l+y  +pe e +l++ e +++e  ++ke+++  +v+e ++ e+vsrwtG
  MMETSP1137-20121227|4581_1 288 XERYEKHHGVRIEDSALVAAAALSARYITHRFLPDKAIDLIDEASACRRVQLDSKPEQLDRLERKLLQLEIEATALGREKDGASKKRLAQVQKQLANLREELAPLQQAWDAERNRGEELRALRERLDGMRIKAQQSRRTGDMQRAADLEYYAIPEAEAKLKALELQNAEseARKESMVSATVSESHVLEIVSRWTG 483
                 59***************************************************************************************************************************************************************98866555004556********************9 PP

>> TIGR03345  VI_ClpV1: type VI secretion ATPase, ClpV1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  188.4   1.2   6.6e-59   4.5e-56       4     277 ..       9     270 ..       6     277 .. 0.85
   2 !  112.7   4.7     5e-36   3.4e-33     364     543 ..     289     483 .]     282     483 .] 0.85

  Alignments for each domain:
  == domain 1    score: 188.4 bits;  conditional E-value: 6.6e-59
   TIGR03345   4 elrkalekaaalavarghsevelehlllklleeedsdl.aeilkelkvdleelkaelaraleklkkgnsrvpal.skelvelleeawllaslelgeervrsgalllalleeaelrallssvskelekieveelkeklealveesaeaeeaekeasaaaeakaaakesaLdkytvdltaqAregkiDpvlgRdeeirqliDiLlRRrqnnPiltGeaGvGktAvveglAlriaagdvPealrevellsLDlgllqAGAsvkGeFekRlksvidevka 277
                 ++ kal++a +la+++gh+  e  hl + l+ + ++ + ++++ +l+v++++++ +l+ral+k ++++   +++ +++ ++++ +a   a  ++g++ v++ +lllal +e +  +++ +  k+l  +e  +++++le++  + + +           + +a+++ +aL+ky +dl aqA egk+Dpv+gRd+eir++i iL+RR +nnP+l+Ge+GvGktAvveglA+ri a+dvPe l++++l++LD+g l AGAs +GeFe+Rlk+v+ ev a
  MMETSP1137-20121227|4581_1   9 ASVKALNDALSLAKEHGHALCEPLHLAAVLFGDGETAVgTRVCVKLGVEVTRVRDALHRALAKRPSQSPPPQNVgADSALRTVLDAASKAIKKTGDQLVAQDQLLLALYKEGN--NAAVKELKHLGLVEG-DVRKALEKMRGGRKVQ-----------SRTAESSYEALEKYGIDLVAQAAEGKLDPVIGRDDEIRRVIQILTRRTKNNPVLVGEPGVGKTAVVEGLAQRILANDVPEGLQNIALRTLDMGSLVAGASHRGEFEERLKAVLAEVAA 270
                 67899**********************9999876655527899*********************9999876555256778888889999********************9997..444455555554433.3444444444333322...........234567789**********************************************************************************************************986 PP

  == domain 2    score: 112.7 bits;  conditional E-value: 5e-36
   TIGR03345 364 kvlekhhgveildeavkaavelsaRYisgRqLPDkavsllDtAcarvalsqkatPaeledlekeiealeaelellereeelgaeeeerlaeleeelaaleeelaalearwekekelveeikelreklee..............eeeeeaeeee..aleaelaeleael.aelqgeeplvsaevdeevvaevvadWtG 543
                 +++ekhhgv+i+d+a++aa+ lsaRYi+ R LPDka++l+D A+a  +++ +++P++l++le+++ +le e+++l re++   ++++rla+++++la+l+eela l+++w++e++  ee+++lre+l+               +++++ e  +  ++ea+l+ le +  ++  ++e++vsa+v+e+ v e+v++WtG
  MMETSP1137-20121227|4581_1 289 ERYEKHHGVRIEDSALVAAAALSARYITHRFLPDKAIDLIDEASACRRVQLDSKPEQLDRLERKLLQLEIEATALGREKD--GASKKRLAQVQKQLANLREELAPLQQAWDAERNRGEELRALRERLDGmrikaqqsrrtgdmQRAADLEYYAipEAEAKLKALELQNaESEARKESMVSATVSESHVLEIVSRWTG 483
                 789******************************************9999****************************996..66789**************************************9987899988887766542223323222344445555444333033345679*******************9 PP

>> TIGR02639  ClpA: ATP-dependent Clp protease ATP-binding subunit ClpA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  185.2   0.0   5.4e-58   3.7e-55       7     275 ..      12     270 ..       6     274 .. 0.89
   2 !   54.9   0.1   1.4e-18   9.9e-16     362     419 ..     289     346 ..     284     393 .. 0.75

  Alignments for each domain:
  == domain 1    score: 185.2 bits;  conditional E-value: 5.4e-58
   TIGR02639   7 kalsealeeakkrrhefvtlehlllalledeeal...eileecgadvellkkklekyleeelekleeeeeaepeqtvglqrvlerallhvksaekkevdigdllvalleeeesyasyllkkqgisrldilelisheiskdekkeeeeeeekeeeekeekkekealekytvdltekakkgkidPliGredelertiqvLcrrkknnPllvGepGvGktaiveGLakriaedkvPealknakiysLdlgsllaGtkyrGdfeerlkevveeiek 275
                 kal++al++ak++ h    + hl  +l  d e++    +  + g++v+++++ l++ l ++ ++      +++ +  +l+ vl+ a + +k+++ + v   +ll al++e ++ a+  lk+ g+   d+ + + +    ++ +++++           +++ ealeky  dl ++a +gk+dP+iGr+de+ r+iq+L+rr+knnP+lvGepGvGkta+veGLa+ri +++vPe l+n  + +Ld+gsl+aG+ +rG+feerlk+v++e+ +
  MMETSP1137-20121227|4581_1  12 KALNDALSLAKEHGHALCEPLHLAAVLFGDGETAvgtRVCVKLGVEVTRVRDALHRALAKRPSQSPP--PQNVGADSALRTVLDAASKAIKKTGDQLVAQDQLLLALYKEGNNAAVKELKHLGLVEGDVRKALEKMRGGRKVQSRTA-----------ESSYEALEKYGIDLVAQAAEGKLDPVIGRDDEIRRVIQILTRRTKNNPVLVGEPGVGKTAVVEGLAQRILANDVPEGLQNIALRTLDMGSLVAGASHRGEFEERLKAVLAEVAA 270
                 789****************99*9888877655432338999999**************999888887..55667788999*****************************************99999998888766554443322222...........235679********************************************************************************************************9975 PP

  == domain 2    score: 54.9 bits;  conditional E-value: 1.4e-18
   TIGR02639 362 ekyeefhkvkysdealeaavelsakyindrfLPDkaiDviDeaGaalrlkekakkkak 419
                 e+ye++h v+ +d+al aa++lsa+yi+ rfLPDkaiD+iDea a  r++ ++k+++ 
  MMETSP1137-20121227|4581_1 289 ERYEKHHGVRIEDSALVAAAALSARYITHRFLPDKAIDLIDEASACRRVQLDSKPEQL 346
                 89********************************************999999887765 PP

>> TIGR02928  TIGR02928: orc1/cdc6 family replication initiation protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.0      0.12        83     238     254 ..     135     151 ..     120     161 .. 0.77
   2 !   16.8   0.0   7.4e-07   0.00051      15      64 ..     180     225 ..     174     242 .. 0.84

  Alignments for each domain:
  == domain 1    score: -0.3 bits;  conditional E-value: 0.12
   TIGR02928 238 hGdaRkAidlLreagei 254
                 +Gd RkA++ +r + ++
  MMETSP1137-20121227|4581_1 135 EGDVRKALEKMRGGRKV 151
                 599*****999987666 PP

  == domain 2    score: 16.8 bits;  conditional E-value: 7.4e-07
   TIGR02928  15 drivhRdeqieelakalkpilrgsrpsnvliyGktGtGKtavtkkvlkel 64 
                 d + +Rd++i+++ ++l      ++ +n +++G++G+GKtav++ + +++
  MMETSP1137-20121227|4581_1 180 DPVIGRDDEIRRVIQILT----RRTKNNPVLVGEPGVGKTAVVEGLAQRI 225
                 56789*****99987665....56778889*************9998876 PP

>> TIGR00764  lon_rel: putative ATP-dependent protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.1     4e-06    0.0027      16      59 ..     178     223 ..     171     240 .. 0.76

  Alignments for each domain:
  == domain 1    score: 14.1 bits;  conditional E-value: 4e-06
   TIGR00764  16 lidqviGqdeavevikkaa..kqkrnvlliGePGvGksmlakamae 59 
                  +d viG+d+ ++ + +    + k n +l+GePGvGk+ +++ +a+
  MMETSP1137-20121227|4581_1 178 KLDPVIGRDDEIRRVIQILtrRTKNNPVLVGEPGVGKTAVVEGLAQ 223
                 5799****9988766554411457789*************999986 PP

>> TIGR03499  FlhF: flagellar biosynthesis protein FlhF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   0.7     2e-05     0.013     149     237 ..     148     243 ..      56     245 .. 0.53
   2 ?    2.2   3.0     0.047        32      77     160 ..     345     426 ..     314     469 .. 0.66

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 2e-05
   TIGR03499 149 eagvseelarelleklke...kedaeeareklreaLekklsvkkeedei.lekggviaLvGptGvGKTTTlAKLAarfvleh...gkkkValiTtD 237
                  + v+ ++a++ +e l++   +  a++a  kl  ++ +  +++   + +  + +   +LvG +GvGKT  +  LA+r + ++   g +++al T+D
  MMETSP1137-20121227|4581_1 148 GRKVQSRTAESSYEALEKygiDLVAQAAEGKLDPVIGRDDEIRRVIQILtRRTKNNPVLVGEPGVGKTAVVEGLAQRILANDvpeGLQNIALRTLD 243
                 4445555555555555555444444444455555544332222222222022333569*******************9988522255677777776 PP

  == domain 2    score: 2.2 bits;  conditional E-value: 0.047
   TIGR03499  77 klskaeekeekekeaeekaaeaaqeaekkleeae..eelrkelkalkellekqlselal.eeedperakllkklleagvseelarel 160
                 +l++     e++  + e +a+a  ++++ +++ +  ++++k+l++l+e l  + ++ ++ +++ +e + l ++l+ + ++++  r+ 
  MMETSP1137-20121227|4581_1 345 QLDRL----ERKLLQLEIEATALGREKDGASK-KrlAQVQKQLANLREELAPLQQAWDAeRNRGEELRALRERLDGMRIKAQQSRRT 426
                 22222....22222222222222222222222.235999999999999999888876667888888999999999998888877765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (483 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       293  (0.0714286); expected 82.0 (0.02)
Passed bias filter:                      147  (0.0358362); expected 82.0 (0.02)
Passed Vit filter:                        27  (0.00658216); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.52u 0.10s 00:00:00.62 Elapsed: 00:00:00.99
# Mc/sec: 643.95
//
Query:       MMETSP1137-20121227|4582_1  [L=341]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.6e-06   24.1   0.0    2.1e-06   23.7   0.0    1.1  1  TIGR03903 TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
    5.3e-06   23.9   0.0    9.7e-06   23.0   0.0    1.4  1  TIGR03724 arch_bud32: Kae1-associated kinase Bud32


Domain annotation for each model (and alignments):
>> TIGR03903  TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.7   0.0     1e-09   2.1e-06      86     210 ..     144     270 ..     135     278 .. 0.85

  Alignments for each domain:
  == domain 1    score: 23.7 bits;  conditional E-value: 1e-09
   TIGR03903  86 lqvLDalaaahdaGvvhRDLkPqnimvsaadveshakvLDFGigaLlpgvedadeatltrttevlGsPaYaaPeqLRgepvtaksDlYaWGLivleCLtGkrvvqG..asvaevlykqLsPvdvslP 210
                  q L  +   h +  +hRD+kP+n ++    + +  + +DFG++    + +  ++     ++++ G+  Ya+ +   g     + Dl a G +++  L G    qG  a++++  y  +s +++s P
  MMETSP1137-20121227|4582_1 144 DQLLQRIEYIHYKSFIHRDIKPDNFLIGLGRKANLIHCIDFGLAKKYRDPKTHQHIPYRENKNLTGTARYASINTHLGIEQSRRDDLEALGYVLMYFLRGSLPWQGlkAATKKQKYDMISEKKMSTP 270
                 499999999*********************99***************999999999999999***********9999999999***************99998888444444555555666666655 PP

>> TIGR03724  arch_bud32: Kae1-associated kinase Bud32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.0   0.0   4.7e-09   9.7e-06      52     142 ..      90     193 ..      83     200 .. 0.76

  Alignments for each domain:
  == domain 1    score: 23.0 bits;  conditional E-value: 4.7e-09
   TIGR03724  52 seakkagvntPvvydvdpe.ekkivmeyiegkklkdlleekel........ellkevGelvgklHkagivhgDlttsNiivk....ddklyliDfGLgkkskev 142
                 +++   gv  P+v++++ e ++++++  + g  l+dl++             ++ ++ + +  +H + ++h D+ + N+++     ++ +  iDfGL+kk ++ 
  MMETSP1137-20121227|4582_1  90 YKILGGGVGIPTVRSFTVEgDYNVMVMDLLGPSLEDLFNFCDRkfnlktilMIADQLLQRIEYIHYKSFIHRDIKPDNFLIGlgrkANLIHCIDFGLAKKYRDP 193
                 666778999999988776525667777788999999988655456786666666777788999*****************9543335667789*****987665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (341 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        72  (0.0175524); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.29u 0.15s 00:00:00.43 Elapsed: 00:00:00.55
# Mc/sec: 818.33
//
Query:       MMETSP1137-20121227|4583_1  [L=421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (421 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       136  (0.0331546); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.15s 00:00:00.44 Elapsed: 00:00:00.73
# Mc/sec: 761.20
//
Query:       MMETSP1137-20121227|4585_1  [L=222]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (222 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        31  (0.00755729); expected 82.0 (0.02)
Passed bias filter:                       31  (0.00755729); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.15s 00:00:00.32 Elapsed: 00:00:00.38
# Mc/sec: 771.09
//
Query:       MMETSP1137-20121227|4586_1  [L=120]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (120 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        48  (0.0117016); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.16s 00:00:00.31 Elapsed: 00:00:00.48
# Mc/sec: 329.97
//
Query:       MMETSP1137-20121227|4587_1  [L=401]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.3e-67  223.7   0.0    8.5e-67  223.2   0.0    1.1  1  TIGR00174 miaA: tRNA dimethylallyltransferase
  ------ inclusion threshold ------
      0.042   11.3   0.0        4.5    4.7   0.0    2.2  2  TIGR00455 apsK: adenylylsulfate kinase


Domain annotation for each model (and alignments):
>> TIGR00174  miaA: tRNA dimethylallyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  223.2   0.0   4.1e-70   8.5e-67       1     279 [.      36     333 ..      36     338 .. 0.90

  Alignments for each domain:
  == domain 1    score: 223.2 bits;  conditional E-value: 4.1e-70
   TIGR00174   1 vivlvGptavGKsqlaiqlakklnaeiisvDslqiYKdldIgtaKpsleerkaipHhlldildpseeysaaefkeealeaiadiskrgkipllvGGtalYlkalleglsstpsae...dklireeleeeaeekgkdvlykeLkkvDPeaaakihpndtrRvkraLEvfyatgkklsellke........qkkelkydivllalalereaLkerieqRvdemlesGlleEvkkLyekysk.idlpslkaiGykelleyleg.......evsledlierikkntrqyAKRQltwlrkksa 279
                 vivl+GptavGKs+l + l + l++e+isvDs+q+Y++l+Ig++Kps+ e++ +pHhl+di++p ++y+a  f+++al+a++++ +rgk p+lvGGt++Ylk l++g+++ p ++    k  ++ l+  ++  ++++ ++ L++ D ++a+++  nd +R++raL v  +t +  ++  +         ++ + + d+  ++l+  re+L +ri++R ++m+++Gl+eEv +L +       +p+ +aiGy++ + yl +       + +l+  +e    ++rqyA +Q++w+rk+ +
  MMETSP1137-20121227|4587_1  36 VIVLTGPTAVGKSALGLRLCEALPGELISVDSVQVYRGLQIGANKPSASELARVPHHLVDICEPRDDYTAGAFYRDALKAVKQVLERGKTPVLVGGTSMYLKWLVNGRPDAPRSDpaiAKRAHAMLQDYEKAGDWNSALSRLAEYDSHRAKELFANDWYRLHRALVVALQTQEGSTNQEEPvepevlqlDELRASLDMRCFFLTFPREQLCRRIDSRCEQMVQAGLIEEVAELLATERLlPSSPAGRAIGYRQTIDYLLRepfvpddKGALQHFVEGFAAASRQYAAKQTKWFRKEXE 333
                 79************************************************************************************************************999842113445667888888899***********************************9977655443321111110033344678999**********************************9999867899**************999999998999************************9865 PP

>> TIGR00455  apsK: adenylylsulfate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   0.0    0.0022       4.5      14      43 ..      30      59 ..      18      75 .. 0.78
   2 ?    4.3   0.0     0.003       6.1      46      95 ..     216     265 ..     201     270 .. 0.89

  Alignments for each domain:
  == domain 1    score: 4.7 bits;  conditional E-value: 0.0022
   TIGR00455 14 kkqksvvlWltGlsgsGkstianalekkLe 43
                +   s v+ ltG+++ Gks++   l ++L 
  MMETSP1137-20121227|4587_1 30 RMAPSRVIVLTGPTAVGKSALGLRLCEALP 59
                5567899*************9887777665 PP

  == domain 2    score: 4.3 bits;  conditional E-value: 0.003
   TIGR00455  46 glrvevLDGDnvrhgLnkdLGfseedrkenirrigevakllvesgvivlt 95 
                  ++ evL  D++r  L     f +  r++  rri   ++ +v++g+i  +
  MMETSP1137-20121227|4587_1 216 PVEPEVLQLDELRASLDMRCFFLTFPREQLCRRIDSRCEQMVQAGLIEEV 265
                 567789999************************************99655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (401 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       172  (0.0419308); expected 82.0 (0.02)
Passed bias filter:                      161  (0.0392491); expected 82.0 (0.02)
Passed Vit filter:                        27  (0.00658216); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.35u 0.15s 00:00:00.50 Elapsed: 00:00:00.73
# Mc/sec: 725.04
//
Query:       MMETSP1137-20121227|4588_1  [L=170]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (170 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       146  (0.0355924); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.12s 00:00:00.29 Elapsed: 00:00:00.30
# Mc/sec: 747.94
//
Query:       MMETSP1137-20121227|4589_1  [L=113]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.5e-25   87.9   0.0    1.5e-25   87.8   0.0    1.0  1  TIGR03674 fen_arch: flap structure-specific endonuclease
    5.4e-14   49.4   0.0    5.9e-14   49.2   0.0    1.0  1  TIGR00600 rad2: DNA excision repair protein (rad2)


Domain annotation for each model (and alignments):
>> TIGR03674  fen_arch: flap structure-specific endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.8   0.0   7.5e-29   1.5e-25      11      84 ..      39     113 .]      21     113 .] 0.87

  Alignments for each domain:
  == domain 1    score: 87.8 bits;  conditional E-value: 7.5e-29
   TIGR03674  11 keeieledlsgkvvavDalNalYqfLssirqedgt.plkdskGritshlsGllyrtinllekgikpvyvFDGkpp 84 
                 k++ ++++  g+ +a+Da  a+YqfL ++rq  g+ +l++++G++tshl+G++yrti++le+gikpv+vFDGkpp
  MMETSP1137-20121227|4589_1  39 KTDGKIDNYFGRKIAIDASMAIYQFLIAVRQAGGEgQLTNEAGEVTSHLTGMFYRTIRMLEAGIKPVFVFDGKPP 113
                 5666789999**********************98758************************************97 PP

>> TIGR00600  rad2: DNA excision repair protein (rad2)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.2   0.0   2.9e-17   5.9e-14       1      81 [.      21     113 .]      21     113 .] 0.82

  Alignments for each domain:
  == domain 1    score: 49.2 bits;  conditional E-value: 2.9e-17
   TIGR00600   1 mGVqglWkll.....ecsgrpvkletLegKilAvDiSiWlyqalKavRDkeGN.aikn......sHlltlFrRlCKLLfFrirPvFVFDGdaP 81 
                 mG++gl kl+     e+ +   k +   g+ +A+D+S+ +yq+l avR   G  ++ n      sHl+++F R  ++L  +i+PvFVFDG  P
  MMETSP1137-20121227|4589_1  21 MGIHGLTKLIgdnapEAMKTDGKIDNYFGRKIAIDASMAIYQFLIAVRQAGGEgQLTNeagevtSHLTGMFYRTIRMLEAGIKPVFVFDGKPP 113
                 99999999983333345566668889999*******************99885456554555559*************************877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (113 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        61  (0.0148708); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.14u 0.15s 00:00:00.29 Elapsed: 00:00:00.30
# Mc/sec: 497.16
//
Query:       MMETSP1137-20121227|4591_1  [L=175]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (175 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        54  (0.0131643); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.15s 00:00:00.32 Elapsed: 00:00:00.59
# Mc/sec: 391.49
//
Query:       MMETSP1137-20121227|4592_1  [L=426]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (426 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       144  (0.0351048); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.16s 00:00:00.44 Elapsed: 00:00:00.73
# Mc/sec: 770.24
//
Query:       MMETSP1137-20121227|4593_1  [L=219]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (219 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       136  (0.0331546); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.16s 00:00:00.36 Elapsed: 00:00:00.28
# Mc/sec: 996.75
//
Query:       MMETSP1137-20121227|4594_1  [L=372]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (372 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        83  (0.020234); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.15s 00:00:00.41 Elapsed: 00:00:00.42
# Mc/sec: 1169.05
//
Query:       MMETSP1137-20121227|4595_1  [L=82]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (82 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        84  (0.0204778); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.61
# Mc/sec: 177.43
//
Query:       MMETSP1137-20121227|4596_1  [L=398]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   8.9e-153  508.1   0.5   9.9e-153  507.9   0.3    1.0  1  TIGR01235 pyruv_carbox: pyruvate carboxylase
    6.9e-46  154.7   0.0    8.2e-46  154.4   0.0    1.0  1  TIGR01108 oadA: oxaloacetate decarboxylase alpha subunit
      6e-13   45.2   0.1    7.5e-13   44.9   0.1    1.1  1  TIGR02712 urea_carbox: urea carboxylase
    2.3e-07   27.9   0.8    7.7e-05   19.6   0.0    2.2  2  TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit
    2.6e-07   27.4   1.5    4.7e-07   26.6   1.0    1.4  1  TIGR01348 PDHac_trf_long: dihydrolipoyllysine-residue acetyltransferase
    1.6e-06   26.5   0.2    3.5e-06   25.4   0.1    1.6  1  TIGR00531 BCCP: acetyl-CoA carboxylase, biotin carboxyl carrier protein
    0.00063   16.6   1.3       0.11    9.2   0.1    2.2  2  TIGR00998 8a0101: efflux pump membrane protein
    0.00096   16.0   0.2      0.033   11.0   0.0    2.1  2  TIGR01843 type_I_hlyD: type I secretion membrane fusion protein, HlyD family
     0.0044   13.8   0.4       0.32    7.7   0.0    2.2  2  TIGR03794 NHLM_micro_HlyD: NHLM bacteriocin system secretion protein
     0.0074   13.3   0.4       0.01   12.9   0.2    1.2  1  TIGR01347 sucB: dihydrolipoyllysine-residue succinyltransferase, E2 component of oxoglutarate dehydrogenase (succinyl-transferring) complex


Domain annotation for each model (and alignments):
>> TIGR01235  pyruv_carbox: pyruvate carboxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  507.9   0.3  2.4e-155  9.9e-153     746    1142 ..       2     397 ..       1     398 [] 0.98

  Alignments for each domain:
  == domain 1    score: 507.9 bits;  conditional E-value: 2.4e-155
   TIGR01235  746 avasvlaaveaGvdvvdvavdslsGltsqPslgalvaaleGseldtglnveevrelsayweevrklyaafesdlkspdaevylheiPGGqytnlkeqakslGlgdrweevkkayreanqllGdivkvtPsskvvGdlalfmvsnkltaddvvekaeeldfPdsvvellkGaiGqPhgGfPeklrkkvlkdekkltvrPGellepldlekikkdlkeklerevsdldvvsyalyPkvfedylkaresyGdvsvldtraflsglkvgeeleveiekGktliikllavg.etksdgerevyfelnGqlrkvkvkdrsakaevavrskadkgnkahvgapmpGvvievkvkaGskvekGdvlvvleamkmetvvqapkdGtvkevlvkdGekidaedlllvl 1142
                  +vas+laa  aG+d+vd+a+ds+sG+tsqPs+g+lvaal+ + + tg++++ +  l  ywe+vr  yaafes+ ks++aevy+he+PGGqytnl++q+ slGl d+w++vkkay  an+llGdivkvtPsskvvGdla+fmv n l ++ v+e+a++l+fP svve+++GaiG P gGfP++++++v+kd + + +rPGe+l pldle++   lk ++ +  s++d++s  +yPkvfe y+k  e++Gdv +l+tra++ ++++gee++v++e+Gktl ikl+avg  + +d++rev+fe+nG +r v ++dr+a+++ +vr+ka   ++a  + pmpGvv e kvk+G++vekG  +v+l+amkmetvv apk G+v ++ + +G++++a dll+ l
  MMETSP1137-20121227|4596_1    2 GVASMLAASAAGADAVDAAIDSMSGMTSQPSMGSLVAALKDDARATGIDMAALYPLIEYWESVRFSYAAFESGQKSGSAEVYEHEMPGGQYTNLQFQSTSLGLADQWSQVKKAYGAANRLLGDIVKVTPSSKVVGDLAQFMVTNGLDEKAVREQADSLNFPSSVVEYFQGAIGIPFGGFPQPMQRQVVKDLPVFSGRPGESLPPLDLEAVMASLKAEYGESTSETDLMSSVMYPKVFEQYKKDLETFGDVAKLPTRAYIEPMELGEEIHVDLERGKTLGIKLIAVGqLHPKDATREVFFEFNGMPRAVIINDRTAQSNKVVRPKAI--DTAGXAXPMPGVVFETKVKVGDTVEKGAAMVILSAMKMETVVAAPKTGKVTSMPITAGDDVKAGDLLVAL 397 
                  89********************************************************************************************************************************************************************************************************************************************************************************************667789********************************96..567789*************************************************************987 PP

>> TIGR01108  oadA: oxaloacetate decarboxylase alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  154.4   0.0     2e-48   8.2e-46     209     582 .]       5     394 ..       1     394 [. 0.84

  Alignments for each domain:
  == domain 1    score: 154.4 bits;  conditional E-value: 2e-48
   TIGR01108 209 allkaieaGvdviDtaisslsagtshpatealvaalretgydtgldiellkeiadyfrevrkkyakfeselkgiDsrilvaqvPGGmlsnlesqLkeqnaldkldevleeiprvreDlGyiPLvtPtsqivGtqavlnvltGeryktitke.........tkdlvkGeyGrtPapikaelvkkvlgdekailevrPadllep.eldklraevreagaekesdeDvLlvalfpevgkkflenrenpvafeeaveekki....eeeavkvvakaveeaasavytv...evegkaeevkvseskevskleasaaaaksagtvaakakastdvtaplaGsivkvkvseGdevkeGevllvleamkmeteikaaaaGiveeilvkkGdkvavgevl 582
                 ++l+a  aG+d +D+ai s+s+ ts+p++ +lvaal++ ++ tg+d+ +l  + +y + vr  ya+fes  k   + +  + +PGG ++nl+ q     ++d+  +v +      + lG i  vtP s++vG  a + v  G   k + +          + ++ +G  G + +   + ++++v++d  ++++ rP++ l+p +l+ ++a +++   e++s+ D+++ +++p+v +++ +  e    + + ++   i      e+++v+ +  ++   + + v   + ++++ ev  + ++    +     +a+s+ +v +ka  ++  + p++G ++++kv+ Gd+v++G ++++l amkmet + a++ G v+++ + +Gd v++g+ l
  MMETSP1137-20121227|4596_1   5 SMLAASAAGADAVDAAIDSMSGMTSQPSMGSLVAALKDDARATGIDMAALYPLIEYWESVRFSYAAFESGQKSGSAEVYEHEMPGGQYTNLQFQSTSLGLADQWSQVKKAYGAANRLLGDIVKVTPSSKVVGDLAQFMVTNGLDEKAVREQadslnfpssVVEYFQGAIGIPFGGFPQPMQRQVVKD-LPVFSGRPGESLPPlDLEAVMASLKAEYGESTSETDLMSSVMYPKVFEQYKKDLETFGDVAKLPTRAYIepmeLGEEIHVDLERGKTLGIKLIAVgqlHPKDATREVFFEFNGMPRAVIINDRTAQSNKVVRPKAIDTAGXAXPMPGVVFETKVKVGDTVEKGAAMVILSAMKMETVVAAPKTGKVTSMPITAGDDVKAGDLL 394
                 4678999********************************************************************************************************************************999999977777765411122222256799**********************.8888********9878******999998899****************99999888844444444444332222445555555555555544444411145666666666655555444445555555666678888888999*********************************************************9976 PP

>> TIGR02712  urea_carbox: urea carboxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.9   0.1   1.8e-15   7.5e-13    1133    1200 ..     330     397 ..     300     398 .] 0.87

  Alignments for each domain:
  == domain 1    score: 44.9 bits;  conditional E-value: 1.8e-15
   TIGR02712 1133 vaveselagrlWkvlvevgdeveagdklviveamkmelavsapvaGkvkkilvkeGdaveaGdalvvl 1200
                  +    ++ g ++++ v+vgd+ve+g  +vi+ amkme++v+ap++Gkv+++ +++Gd v+aGd+lv l
  MMETSP1137-20121227|4596_1  330 AGXAXPMPGVVFETKVKVGDTVEKGAAMVILSAMKMETVVAAPKTGKVTSMPITAGDDVKAGDLLVAL 397 
                  4456678999*******************************************************987 PP

>> TIGR01730  RND_mfp: efflux transporter, RND family, MFP subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.3   0.1     0.001      0.42       9      57 ..     314     360 ..     307     366 .. 0.81
   2 !   19.6   0.0   1.9e-07   7.7e-05      25      58 ..     365     398 .]     360     398 .] 0.94

  Alignments for each domain:
  == domain 1    score: 7.3 bits;  conditional E-value: 0.001
   TIGR01730   9 etleesrefpgsleavdeaeiaaevaGkvtkisvkeGqkVkkGqlLakl 57 
                 +t ++ +  + + +a+d+a  a   +G+v + +vk G++V kG  ++ l
  MMETSP1137-20121227|4596_1 314 RTAQSNK--VVRPKAIDTAGXAXPMPGVVFETKVKVGDTVEKGAAMVIL 360
                 5555554..778899999999999*******************998877 PP

  == domain 2    score: 19.6 bits;  conditional E-value: 1.9e-07
   TIGR01730  25 deaeiaaevaGkvtkisvkeGqkVkkGqlLakld 58 
                 +e+ +aa ++Gkvt++ +++G+ Vk+G+lL+ ld
  MMETSP1137-20121227|4596_1 365 METVVAAPKTGKVTSMPITAGDDVKAGDLLVALD 398
                 6899****************************98 PP

>> TIGR01348  PDHac_trf_long: dihydrolipoyllysine-residue acetyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.6   1.0   1.1e-09   4.7e-07     170     228 ..     339     397 ..     316     398 .] 0.92

  Alignments for each domain:
  == domain 1    score: 26.6 bits;  conditional E-value: 1.1e-09
   TIGR01348 170 evievlvkvGdtvsadqslitlesdkaslevPapasGvvkslkvkvGdkvktGdlilvl 228
                  v e  vkvGdtv+++ +++ l + k    v ap +G v s+ +  Gd+vk Gdl++ l
  MMETSP1137-20121227|4596_1 339 VVFETKVKVGDTVEKGAAMVILSAMKMETVVAAPKTGKVTSMPITAGDDVKAGDLLVAL 397
                 578999*************************************************9987 PP

>> TIGR00531  BCCP: acetyl-CoA carboxylase, biotin carboxyl carrier protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.4   0.1   8.6e-09   3.5e-06     100     153 ..     343     396 ..     305     398 .] 0.90

  Alignments for each domain:
  == domain 1    score: 25.4 bits;  conditional E-value: 8.6e-09
   TIGR00531 100 pfvevGdkvkkgdvvciveAmklmneieaevagkvveilvedgqpveygepLiv 153
                 + v+vGd+v+kg ++ i+ Amk+   + a ++gkv ++ +  g+ v  g+ L+ 
  MMETSP1137-20121227|4596_1 343 TKVKVGDTVEKGAAMVILSAMKMETVVAAPKTGKVTSMPITAGDDVKAGDLLVA 396
                 569*******************************************99998876 PP

>> TIGR00998  8a0101: efflux pump membrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.6   0.1    0.0017      0.71     202     239 ..     327     363 ..     313     371 .. 0.79
   2 !    9.2   0.1   0.00027      0.11      48      74 ..     372     398 .]     361     398 .] 0.73

  Alignments for each domain:
  == domain 1    score: 6.6 bits;  conditional E-value: 0.0017
   TIGR00998 202 lkrteiraPvdGvvarrkvqvGqvvsagqplmalvpae 239
                 ++ +    P+ Gvv + kv+vG++v  g + m +++a 
  MMETSP1137-20121227|4596_1 327 IDTAGXAXPMPGVVFETKVKVGDTVEKGAA-MVILSAM 363
                 56666678*****************99865.5555554 PP

  == domain 2    score: 9.2 bits;  conditional E-value: 0.00027
   TIGR00998  48 qvsGkvievlkddtdaVkqGdvLvklD 74 
                   +Gkv+ +  + +d Vk+Gd+Lv lD
  MMETSP1137-20121227|4596_1 372 PKTGKVTSMPITAGDDVKAGDLLVALD 398
                 446888888888888888888888887 PP

>> TIGR01843  type_I_hlyD: type I secretion membrane fusion protein, HlyD family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.1     0.016       6.6      52      80 ..     338     366 ..     335     371 .. 0.89
   2 !   11.0   0.0   8.1e-05     0.033      45      75 ..     368     398 .]     366     398 .] 0.90

  Alignments for each domain:
  == domain 1    score: 3.4 bits;  conditional E-value: 0.016
   TIGR01843  52 GivreIlVreGdrVkaGqvLveLdatsve 80 
                 G+v e  V+ Gd V++G  +v L a+++e
  MMETSP1137-20121227|4596_1 338 GVVFETKVKVGDTVEKGAAMVILSAMKME 366
                 7888999****************998876 PP

  == domain 2    score: 11.0 bits;  conditional E-value: 8.1e-05
   TIGR01843  45 vvQhlegGivreIlVreGdrVkaGqvLveLd 75 
                 vv    +G v ++ ++ Gd VkaG++Lv Ld
  MMETSP1137-20121227|4596_1 368 VVAAPKTGKVTSMPITAGDDVKAGDLLVALD 398
                 56667899********************998 PP

>> TIGR03794  NHLM_micro_HlyD: NHLM bacteriocin system secretion protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.0   0.1    0.0051       2.1      66      92 ..     337     363 ..     331     367 .. 0.82
   2 !    7.7   0.0   0.00078      0.32     251     284 ..     364     397 ..     359     398 .] 0.76

  Alignments for each domain:
  == domain 1    score: 5.0 bits;  conditional E-value: 0.0051
   TIGR03794  66 sGqvidlkvkvGdqvkkgdvvarieqp 92 
                  G+v + kvkvGd+v+kg  + +++ +
  MMETSP1137-20121227|4596_1 337 PGVVFETKVKVGDTVEKGAAMVILSAM 363
                 599999999999999999988877765 PP

  == domain 2    score: 7.7 bits;  conditional E-value: 0.00078
   TIGR03794 251 nlnteivsqhdGrvlevsltkGdlVeagaslasl 284
                 +++t + +++ G+v+++ +t Gd V+ag  l+ l
  MMETSP1137-20121227|4596_1 364 KMETVVAAPKTGKVTSMPITAGDDVKAGDLLVAL 397
                 5678888888888888888888888888887776 PP

>> TIGR01347  sucB: dihydrolipoyllysine-residue succinyltransferase, E2 component of oxoglutarate dehydrogenase (succinyl-transferring) complex
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.9   0.2   2.5e-05      0.01      17      74 ..     340     397 ..     336     398 .] 0.91

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 2.5e-05
   TIGR01347  17 vaewekkvGdavkkdeliveletDkvslevaseadGvleellekegdtvesgevlael 74 
                 v e + kvGd+v+k+ ++v l   k++  va+++ G ++++  + gd v++g+ l  l
  MMETSP1137-20121227|4596_1 340 VFETKVKVGDTVEKGAAMVILSAMKMETVVAAPKTGKVTSMPITAGDDVKAGDLLVAL 397
                 5566779*********************************************999766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (398 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       154  (0.0375427); expected 82.0 (0.02)
Passed bias filter:                      120  (0.029254); expected 82.0 (0.02)
Passed Vit filter:                        20  (0.00487567); expected 4.1 (0.001)
Passed Fwd filter:                        10  (0.00243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.44u 0.13s 00:00:00.57 Elapsed: 00:00:01.03
# Mc/sec: 510.02
//
Query:       MMETSP1137-20121227|4597_1  [L=117]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.4e-05   20.4   3.3    8.4e-05   20.4   2.3    1.5  2  TIGR02999 Sig-70_X6: RNA polymerase sigma factor, TIGR02999 family


Domain annotation for each model (and alignments):
>> TIGR02999  Sig-70_X6: RNA polymerase sigma factor, TIGR02999 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   2.3     2e-08   8.4e-05      56     140 ..       4      87 ..       2     101 .. 0.86
   2 ?   -1.9   0.0      0.13   5.5e+02      88     102 ..      98     112 ..      91     114 .. 0.65

  Alignments for each domain:
  == domain 1    score: 20.4 bits;  conditional E-value: 2e-08
   TIGR02999  56 aylrLvkereekfsdrahflalaakamrriLiDhaRarraqkRgggairvsleekeeeaeadkaeelldlddaLekLskvkprla 140
                 a lr ++++ ++  d  ++  +a +amr++L  + Ra++a    +++ r+++++ +e ++a+++++ + ld+  e+ ++  p+ a
  MMETSP1137-20121227|4597_1   4 ALLRQAAAARQE-ADAIDLTGAAQEAMRNVLAQERRAHEAGELSSQRARAKISDAQERFKAGAEAQGISLDEEIEATERKPPNTA 87 
                 566665444444.7899999****************************************************9999887777766 PP

  == domain 2    score: -1.9 bits;  conditional E-value: 0.13
   TIGR02999  88 DhaRarraqkRggga 102
                  +a  ++ +kR+g+a
  MMETSP1137-20121227|4597_1  98 QRAKIQQQEKRKGQA 112
                 456667777777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (117 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       185  (0.0451); expected 82.0 (0.02)
Passed bias filter:                      100  (0.0243784); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.17u 0.15s 00:00:00.32 Elapsed: 00:00:00.32
# Mc/sec: 482.59
//
Query:       MMETSP1137-20121227|4598_1  [L=230]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        2.4    5.1  49.8        3.1    4.8  34.5    1.1  1  TIGR02794 tolA_full: protein TolA


Domain annotation for each model (and alignments):
>> TIGR02794  tolA_full: protein TolA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8  34.5   0.00075       3.1      59     231 ..      26     206 ..       5     227 .. 0.34

  Alignments for each domain:
  == domain 1    score: 4.8 bits;  conditional E-value: 0.00075
   TIGR02794  59 kkaakkepkpeepkqerqkkleqqaeeakkkqaaeqarqkelekqraaaekaakkaeeaakekeekkkqaeeakakqaaEa.kakaeaeaKa.ekkakeeAakkaEeeakakaaaeakkkaEa.............e.eakkkaeaeakKakaeaeaKakae..eakaKaeaeAkaKAeaeAkaKaeaeak 231
                 k+++++  + ee+ ++   + +q  +  +++++ +  r ++le++ +a ++ +  ++ +++ k++ ++qa + +ak+      ak +a   a e++a e+ ++ aE ++  k+a++  +ka+              e   +++ae     +   a+a+a  e  ea+++a    k K  + A++ a++ + 
  MMETSP1137-20121227|4598_1  26 KEQERR-RRDEENCRQVRMQNDQHLASVRAQRESDLIRMRQLEEETLAMAERQE-QNRERELKKTYARQALQYAAKESMQEvLAKRAA---AdEARALERMKADAELAK-LKEAEKRSRKAQMqkdaldvlaiqvrEkQVRAQAESNYXGDDRRAAARA--EemEARRRAM--TKSKNMQYAEELAAQIKH 206
                 111111.12233333444444444445555566666666666555554444222.122222222233333333333222221111111...123344444333333333.2222222222221122122222221111111111111111111122222..1112222222..222222222222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (230 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       569  (0.138713); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.30u 0.14s 00:00:00.44 Elapsed: 00:00:00.41
# Mc/sec: 740.43
//
Query:       MMETSP1137-20121227|4599_1  [L=201]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.4e-15   53.0   0.0    7.6e-15   53.0   0.0    1.1  1  TIGR02349 DnaJ_bact: chaperone protein DnaJ
    2.1e-09   34.1   0.2    2.6e-09   33.8   0.1    1.0  1  TIGR03835 termin_org_DnaJ: terminal organelle assembly protein TopJ


Domain annotation for each model (and alignments):
>> TIGR02349  DnaJ_bact: chaperone protein DnaJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.0   0.0   3.7e-18   7.6e-15       1      67 [.       9      74 ..       9     149 .. 0.85

  Alignments for each domain:
  == domain 1    score: 53.0 bits;  conditional E-value: 3.7e-18
   TIGR02349  1 dYYeiLgvskdAseeeikkAYrklakkyHPDrnkgekeaeekfkeineAyevLsdeekraqYDqfgh 67
                d Y iL ++ +A++e+i++AY + a+++HPDr k   e++ +f ++++A e L +++ r+qYD   +
  MMETSP1137-20121227|4599_1  9 DAYGILKLDASATAEDIRRAYHQAARDHHPDRRK-AGESDMHFIQVQRAWEALREPDARRQYDAQKR 74
                5699******************************.999*************************8433 PP

>> TIGR03835  termin_org_DnaJ: terminal organelle assembly protein TopJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.8   0.1   1.3e-12   2.6e-09       3      65 ..       9      71 ..       8      90 .. 0.95

  Alignments for each domain:
  == domain 1    score: 33.8 bits;  conditional E-value: 1.3e-12
   TIGR03835  3 DyyevLgidrDadeqeikkafrkLakkyhPDrnkaadaakifaeineandvLsnPkkraryDk 65
                D y +L++d  a  ++i++a+ + a+ +hPDr ka +++  f  +  a + L  P+ r +yD 
  MMETSP1137-20121227|4599_1  9 DAYGILKLDASATAEDIRRAYHQAARDHHPDRRKAGESDMHFIQVQRAWEALREPDARRQYDA 71
                789**********************************************************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (201 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       153  (0.0372989); expected 82.0 (0.02)
Passed bias filter:                      134  (0.032667); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.21u 0.19s 00:00:00.40 Elapsed: 00:00:00.42
# Mc/sec: 631.66
//
Query:       MMETSP1137-20121227|4600_1  [L=256]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (256 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        73  (0.0177962); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.16s 00:00:00.38 Elapsed: 00:00:00.38
# Mc/sec: 889.19
//
Query:       MMETSP1137-20121227|4602_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        26  (0.00633837); expected 82.0 (0.02)
Passed bias filter:                       25  (0.00609459); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.13s 00:00:00.25 Elapsed: 00:00:00.30
# Mc/sec: 224.38
//
Query:       MMETSP1137-20121227|4603_1  [L=102]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.011   12.3   0.1      0.014   12.1   0.1    1.0  1  TIGR01984 UbiH: 2-polyprenyl-6-methoxyphenol 4-hydroxylase


Domain annotation for each model (and alignments):
>> TIGR01984  UbiH: 2-polyprenyl-6-methoxyphenol 4-hydroxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.1   3.3e-06     0.014      84     153 ..      23      97 ..      17      98 .. 0.77

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 3.3e-06
   TIGR01984  84 galelraeeva.lpaLGyVveladlkqallkrlaekkkiklyapaelkeierekde....aevkldneqkleakL 153
                 g + l+aee++  +aLGyV++ ++ k++ + r+ ++++i   + ++  ++ + +++    +++ +d  q +++kL
  MMETSP1137-20121227|4603_1  23 GEVGLNAEEIEkFEALGYVMSGSRHKRMNAVRIRKENQIYSAEEKRALQMFNYEEKqkreNQILADFRQLVQTKL 97 
                 67888988875269************************9998877655543322222334899999999999887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (102 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       224  (0.0546075); expected 82.0 (0.02)
Passed bias filter:                      137  (0.0333983); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.16u 0.17s 00:00:00.33 Elapsed: 00:00:00.46
# Mc/sec: 292.67
//
Query:       MMETSP1137-20121227|4604_1  [L=611]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.5e-07   25.1   0.0    1.1e-06   24.5   0.0    1.2  1  TIGR04121 DEXH_lig_assoc: DEXH box helicase, DNA ligase-associated
  ------ inclusion threshold ------
      0.031   12.0   0.0      0.056   11.2   0.0    1.3  1  TIGR01957 nuoB_fam: NADH-quinone oxidoreductase, B subunit


Domain annotation for each model (and alignments):
>> TIGR04121  DEXH_lig_assoc: DEXH box helicase, DNA ligase-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.5   0.0   5.4e-10   1.1e-06      14     155 ..      63     199 ..      58     249 .. 0.79

  Alignments for each domain:
  == domain 1    score: 24.5 bits;  conditional E-value: 5.4e-10
   TIGR04121  14 prafQkevleaaeegesglliapTGaGKTlavflpslielaakekpkkglkvlyitPLkaLakdieraleapieelgleirvelrtGDtssserar.qrkkppdiLltTpEslaLllsskdaeklfkdlravvvDElHeLlgs 155
                 p + Q+e + +a  g + l +a  G+GKT   +l++l +l   ++  + + ++ +   + La +i +  e+  + l  +++ ++  G  s +e++r  +++pp+i++ Tp  +  l+ +kd ++  k+++  ++DE  ++l++
  MMETSP1137-20121227|4604_1  63 PSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLSTLHQLD-PKE--NQVGAIVLCHTRELAYQICNEFERFSRYLP-DVKTKVFYGGISVQEHKRiLKTEPPHIIVATPGRVLQLIREKDVQT--KGIKHFILDECDKMLEQ 199
                 56789999999******************999999999999.444..44566667778***********99988874.566666666666555555167899**********999999988875..89********9998875 PP

>> TIGR01957  nuoB_fam: NADH-quinone oxidoreductase, B subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   2.7e-05     0.056      38     109 ..     197     268 ..     165     272 .. 0.87

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 2.7e-05
   TIGR01957  38 asrydldrfgavvfrasPrqadvlivaGtvtkkmapvlrrlydqmpePkyvismGacansGGlfkesysvvk 109
                   + d+ +  +++f+++P +  v++ + t+++ m +v ++  +  p P    +  +c++  G       vv+
  MMETSP1137-20121227|4604_1 197 LEQLDMRKDVQEIFKSTPHEKQVMMFSATLSNEMRAVCKKFMQVGPPPSLTAARTTCVAPAGSLAPGSRVVR 268
                 567788888889******************************999************999998877777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (611 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       106  (0.0258411); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.18s 00:00:00.63 Elapsed: 00:00:00.56
# Mc/sec: 1414.83
//
Query:       MMETSP1137-20121227|4606_1  [L=227]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (227 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       135  (0.0329108); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.16s 00:00:00.36 Elapsed: 00:00:00.38
# Mc/sec: 788.46
//
Query:       MMETSP1137-20121227|4607_1  [L=353]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (353 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        88  (0.0214529); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.13s 00:00:00.40 Elapsed: 00:00:00.39
# Mc/sec: 1194.67
//
Query:       MMETSP1137-20121227|4608_1  [L=434]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.6e-21   74.2   0.0    4.4e-12   43.9   0.0    2.1  2  TIGR03301 PhnW-AepZ: 2-aminoethylphosphonate aminotransferase
    1.7e-19   68.0   0.0    1.3e-17   61.8   0.0    2.0  1  TIGR02326 transamin_PhnW: 2-aminoethylphosphonate--pyruvate transaminase
  ------ inclusion threshold ------
      0.011   12.6   0.0       0.02   11.8   0.0    1.3  1  TIGR01977 am_tr_V_EF2568: cysteine desulfurase family protein


Domain annotation for each model (and alignments):
>> TIGR03301  PhnW-AepZ: 2-aminoethylphosphonate aminotransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.3   0.0   1.7e-10   2.4e-07      32     104 ..      69     144 ..      54     160 .. 0.72
   2 !   43.9   0.0   3.2e-15   4.4e-12     106     300 ..     167     367 ..     158     407 .. 0.74

  Alignments for each domain:
  == domain 1    score: 28.3 bits;  conditional E-value: 1.7e-10
   TIGR03301  32 vteqvrekllklaegdd.ky...tavllqgSGtaaveavigslvpkegkllvlenGaYgeRlakiaeylglphtalk 104
                 + e  ++ +l++ +  +  y    +v + gSGt ++eav      +++k++vl nG ++ R ++i e  ++p  +  
  MMETSP1137-20121227|4608_1  69 MSEPFKKVMLDMGSMXKeVYnaeHCVVIPGSGTYGMEAVARQF-ATDKKVMVLRNGFFSFRWTDIFETCNIPKEHTV 144
                 4444444444443333322211159*************98887.99*************************965443 PP

  == domain 2    score: 43.9 bits;  conditional E-value: 3.2e-15
   TIGR03301 106 seeeevdlseieelLaedpdithvavvHhEtttgiLnp...leaiakvarshgavlivDavSslgaipidieeldvdaliasanKclegvpGlsFviarrdlleasag.narSlyldLydqwaymeke..g..kwrftppthvvaAlaqAleeleaeggvearlerykrnaellvdglr.alGleplleeeiqspiivsfkspd 300
                  +++++ ++e+e+l+a+++  + + + H Et+tgiL p   ++ +a+  +++g  +++D ++s g++ +++e l+vdali++ +K+  g + ++ v+  +   ea++  ++ Sl+++L +  ++m+    g    + t pt+ +  +++A+   +  g  +  ++   +  + ++  +  + Gl++++ + +qsp +v ++  d
  MMETSP1137-20121227|4608_1 167 AQYRPPPIEELEALIAKEK-PAVFFAPHVETSTGILLPddyVQRVAAAXHKEGGLMVLDCIAS-GTLWVNMEALGVDALITAPQKGWTGPACAGIVLLSKRGGEATRAsKSTSLCCNLGKWLEVMDSYeaGgfSYHTTMPTDALVLARDAMVLTKXFG-YDKAQQNAVELGKRVRSLMSeEKGLKSVAAPGFQSPGVVVVHHDD 367
                 5677788888888777665.5677889*********9855577777778999*********98.999****************************9988777777665599*********88999865455123455999999999999998877777.44444455556666666664257***********99666666544 PP

>> TIGR02326  transamin_PhnW: 2-aminoethylphosphonate--pyruvate transaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.8   0.0   9.5e-21   1.3e-17      30     342 ..      63     404 ..      54     425 .. 0.74

  Alignments for each domain:
  == domain 1    score: 61.8 bits;  conditional E-value: 9.5e-21
   TIGR02326  30 dsdynevvekirqkllklataeee.y...tsvllqGsGtfaveaviGsavpkdgkllvvinGayGkrlaqiaelleipvv..vve................te...ekeatnvaevekilaadpeithvalvhsetttGilnP...ieavakvakryGkvlivdamssfGgieidiaeleidylissankciqGvPGfgfviakeael.ekckgnarslsldlydqweamek.keG..kwrftsPthvvaafaqallelekeGGvearyqryqanqkllvaelralGfesllddelqsPiitsfks.PedsdyefadfyqrlkekGfviyPGkvskvdtfriGniG 342
                 d   n++ e  ++ +l + +  +e y    +v++ GsGt+++eav     ++d+k++v+ nG +  r ++i e  +ip    vv+                ++   +  ++ ++e+e+++a+++    +a  h et+tGil P   ++ va+  ++ G  +++d ++s G++ +++++l +d+li++ +k   G    g v+  +    +  + ++ sl+ +l    e+m++ + G   +  t Pt  +    +a++  +  G  +a+++  +  +++ +   ++ G++s+  + +qsP ++  +     +  +f +  +++   G     G    ++tfriG  G
  MMETSP1137-20121227|4608_1  63 DRALNHMSEPFKKVMLDMGSMXKEvYnaeHCVVIPGSGTYGMEAVA-RQFATDKKVMVLRNGFFSFRWTDIFETCNIPKEhtVVKaqcaapmdgcgtatcaCNgkaQYRPPPIEELEALIAKEKPAVFFA-PHVETSTGILLPddyVQRVAAAXHKEGGLMVLDCIAS-GTLWVNMEALGVDALITAPQKGWTGPACAGIVLLSKRGGeATRASKSTSLCCNLGKWLEVMDSyEAGgfSYHTTMPTDALVLARDAMVLTKXFGYDKAQQNAVELGKRVRSLMSEEKGLKSVAAPGFQSPGVVVVHHdDATVAGKFLKAGTQIA-AGVPFKLGEHPATKTFRIGLFG 404
                 6667888888888888887766665522259************975.67899**********************99985411222111111111111111122111223456789999999999888887.5*********9944456667778999*********99.*************************999999976555550555789**********99***86245623456799***999999999988888888888888887777777777889*************776655404455566666666654.4666666777777777777766 PP

>> TIGR01977  am_tr_V_EF2568: cysteine desulfurase family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   1.4e-05      0.02     128     214 ..     175     264 ..     154     300 .. 0.85

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 1.4e-05
   TIGR01977 128 ekikkaikkd.tklivlshaSNvtGtilp...ieeiaelakekgilflvDaaqtaGvleidveklaidllaftGHKgLlgpqGiggllike 214
                 e+++  i k+ +++    h+   tG++lp   ++ +a   +++g l+++D     G+l +++e l +d+l+ +  Kg  gp+  g +l++ 
  MMETSP1137-20121227|4608_1 175 EELEALIAKEkPAVFFAPHVETSTGILLPddyVQRVAAAXHKEGGLMVLDCI-ASGTLWVNMEALGVDALITAPQKGWTGPACAGIVLLSK 264
                 66777666554788888899999*****9666777788889999******86.67**************************9998777655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (434 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       102  (0.0248659); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.39u 0.15s 00:00:00.54 Elapsed: 00:00:00.50
# Mc/sec: 1145.67
//
Query:       MMETSP1137-20121227|4609_1  [L=303]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (303 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       120  (0.029254); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.16s 00:00:00.39 Elapsed: 00:00:00.43
# Mc/sec: 930.06
//
Query:       MMETSP1137-20121227|4610_1  [L=303]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.4e-08   30.8   0.0    0.00065   17.2   0.0    2.9  2  TIGR00099 Cof-subfamily: Cof-like hydrolase
    2.5e-07   28.8   0.0      0.036   11.9   0.0    3.2  3  TIGR01484 HAD-SF-IIB: HAD hydrolase, family IIB
      8e-07   26.7   0.0      0.027   11.9   0.0    2.7  3  TIGR01482 SPP-subfamily: sucrose-phosphate phosphatase subfamily
    2.8e-06   25.2   0.0     0.0045   14.7   0.0    2.8  3  TIGR01487 SPP-like: SPP-like hydrolase, Archaeal
     0.0075   13.6   0.0       0.02   12.3   0.0    1.7  1  TIGR01485 SPP_plant-cyano: sucrose phosphatase
  ------ inclusion threshold ------
      0.022   12.5   0.2       0.81    7.5   0.1    2.3  1  TIGR01488 HAD-SF-IB: HAD phosphoserine phosphatase-like hydrolase, family IB
      0.028   11.9   0.3      0.056   10.9   0.0    1.5  2  TIGR01454 AHBA_synth_RP: AHBA synthesis associated protein


Domain annotation for each model (and alignments):
>> TIGR00099  Cof-subfamily: Cof-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.0   1.1e-06   0.00065       2      56 ..       9     105 ..       8     132 .. 0.85
   2 !    9.3   0.0   0.00028      0.17     180     241 ..     208     268 ..     180     283 .. 0.87

  Alignments for each domain:
  == domain 1    score: 17.2 bits;  conditional E-value: 1.1e-06
   TIGR00099   2 ifiDlDGTLls..........................................kdkeispetkealaklrekGikvvlaTGRsykevkeilkelgld 56 
                 if+DlDGTL+                                            d  +s++t+e +a+lr+ G+ ++++TG  ++ v+e l+ l   
  MMETSP1137-20121227|4610_1   9 IFSDLDGTLIHfpiwfekhgvsmsdadhekhsaivtnaqgesrrcrllpkttmGDGVVSDRTVELVAQLRKAGVLFFIVTGARKSTVLERLPFLPDA 105
                 99***********************************************9999999*************************8888877766665555 PP

  == domain 2    score: 9.3 bits;  conditional E-value: 0.00028
   TIGR00099 180 ieitakgvsKgsalqslaeklgislenviaiGDseNDieMleaagvgvamgnaneelkalad 241
                 +++ ++g  K +a+ +l   l  ++e++++  D++ND+ M   +gv       +++++++a+
  MMETSP1137-20121227|4610_1 208 FDFFPAGSGKQNAVAYLSV-LAXKPEECACLFDDDNDLGMAAQCGVHLLPALTSDSVREAAK 268
                 7999999*******99876.*********************999999999999999999887 PP

>> TIGR01484  HAD-SF-IIB: HAD hydrolase, family IIB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.7   0.0    0.0049       2.9       1      12 [.       8      19 ..       8      39 .. 0.84
   2 !    7.8   0.0    0.0012      0.67      15      69 ..      64     117 ..      55     127 .. 0.74
   3 !   11.9   0.0   6.1e-05     0.036     171     218 ..     207     253 ..     161     256 .. 0.87

  Alignments for each domain:
  == domain 1    score: 5.7 bits;  conditional E-value: 0.0049
   TIGR01484  1 llffDlDgTLld 12
                ++f+DlDgTL +
  MMETSP1137-20121227|4610_1  8 AIFSDLDGTLIH 19
                59********87 PP

  == domain 2    score: 7.8 bits;  conditional E-value: 0.0012
   TIGR01484  15 lelseelieaLerlrealgvkvvivTGRslaeikellkqlnlelpliaengalie 69 
                 + +s+++ e +++lr+a gv ++ivTG   + ++e l+ l     ++ e+g+ ++
  MMETSP1137-20121227|4610_1  64 GVVSDRTVELVAQLRKA-GVLFFIVTGARKSTVLERLPFLPDADAVVGESGSRMY 117
                 689**************.9********8888888777743334445555566555 PP

  == domain 3    score: 11.9 bits;  conditional E-value: 6.1e-05
   TIGR01484 171 llevlpagvdKgkalqalleelnlkkeeilafGDsgNDeemlevagla 218
                  ++++pag +K  a+++l   +  k ee+ ++ D++ND+ m  ++g++
  MMETSP1137-20121227|4610_1 207 KFDFFPAGSGKQNAVAYLSVLAX-KPEECACLFDDDNDLGMAAQCGVH 253
                 589*****************999.99*************999888876 PP

>> TIGR01482  SPP-subfamily: sucrose-phosphate phosphatase subfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0       0.4   2.3e+02       1      11 [.       9      19 ..       9      51 .. 0.74
   2 !   11.9   0.0   4.6e-05     0.027      17      78 ..      67     128 ..      59     131 .. 0.86
   3 !   11.5   0.0   5.8e-05     0.034     141     203 ..     208     269 ..     190     287 .. 0.88

  Alignments for each domain:
  == domain 1    score: -1.0 bits;  conditional E-value: 0.4
   TIGR01482  1 iasDlDgTlvd 11
                i sDlDgTl+ 
  MMETSP1137-20121227|4610_1  9 IFSDLDGTLIH 19
                67999999975 PP

  == domain 2    score: 11.9 bits;  conditional E-value: 4.6e-05
   TIGR01482  17 nlsaleairkaesvyillvlvtGrsvkfakelakligtpdivilenGgeilyneglddkfle 78 
                 + + +e+ ++  + ++l+ +vtG  +  + e   +++  d+v+ e G+ ++ +  ld+++ +
  MMETSP1137-20121227|4610_1  67 SDRTVELVAQLRKAGVLFFIVTGARKSTVLERLPFLPDADAVVGESGSRMYVEGKLDEEWQQ 128
                 567889999999999********888777777788899**************9999999976 PP

  == domain 3    score: 11.5 bits;  conditional E-value: 5.8e-05
   TIGR01482 141 ldilpkgvdKGkavkylkeklgikpeeilviGDSeNDidlFevavfkvavanAqeelkewadl 203
                 +d  p+g++K +av+yl   l+ kpee + + D +ND+++    ++   +a   + ++e+a  
  MMETSP1137-20121227|4610_1 208 FDFFPAGSGKQNAVAYLS-VLAXKPEECACLFDDDNDLGMAAQCGVHLLPALTSDSVREAAKN 269
                 57789***********97.799******************99999999999999999988865 PP

>> TIGR01487  SPP-like: SPP-like hydrolase, Archaeal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.0      0.28   1.6e+02       1      13 [.       6      18 ..       6      30 .. 0.87
   2 !   14.7   0.0   7.6e-06    0.0045      16      72 ..      63     119 ..      58     130 .. 0.86
   3 !    6.5   0.0    0.0024       1.4     144     199 ..     213     267 ..     191     269 .. 0.86

  Alignments for each domain:
  == domain 1    score: -0.2 bits;  conditional E-value: 0.28
   TIGR01487  1 iklvavDiDgTlt 13
                i+++ +D+DgTl 
  MMETSP1137-20121227|4610_1  6 IRAIFSDLDGTLI 18
                67999******96 PP

  == domain 2    score: 14.7 bits;  conditional E-value: 7.6e-06
   TIGR01487  16 nrlislraieairklekkGikvvlvtGnevkfvealavligvsgavvaEnGgvvlyk 72 
                 + ++s r +e + +l+k G+ + +vtG  +  v     ++   +avv+E G+ +  +
  MMETSP1137-20121227|4610_1  63 DGVVSDRTVELVAQLRKAGVLFFIVTGARKSTVLERLPFLPDADAVVGESGSRMYVE 119
                 668999*********************98887777778888889*******988765 PP

  == domain 3    score: 6.5 bits;  conditional E-value: 0.0024
   TIGR01487 144 kgvdKgvgvkklkellGlkkeevaaiGDsenDldlFrvagfkvavanAddelKeia 199
                 +g +K  +v  l   l  k+ee a + D +nDl +  + g +  +a   d+++e+a
  MMETSP1137-20121227|4610_1 213 AGSGKQNAVAYLS-VLAXKPEECACLFDDDNDLGMAAQCGVHLLPALTSDSVREAA 267
                 5667777777664.56789**********************************998 PP

>> TIGR01485  SPP_plant-cyano: sucrose phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.3   0.0   3.3e-05      0.02     126     200 ..     175     248 ..     100     257 .. 0.80

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 3.3e-05
   TIGR01485 126 ldkeaaaevlkqleeeleksgldvkliys.sGkdldilPqgadkgqalqylleklkiepsqtlvCGdsGndielfe 200
                 +d +   e  k+l + l  +++++++ ++ +   +d  P g++k++a++yl   l+ +p++     d  nd+++ +
  MMETSP1137-20121227|4610_1 175 VDTKGDLEAEKSLRA-LISTEMPAEINWAmNLAKFDFFPAGSGKQNAVAYLS-VLAXKPEECACLFDDDNDLGMAA 248
                 555555555555554.4456677777776244679***************96.69999999999999999988765 PP

>> TIGR01488  HAD-SF-IB: HAD phosphoserine phosphatase-like hydrolase, family IB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   0.1    0.0014      0.81       2      99 ..       9      91 ..       8      99 .. 0.53

  Alignments for each domain:
  == domain 1    score: 7.5 bits;  conditional E-value: 0.0014
   TIGR01488  2 aifDfDgTLtdqdsliellkkllgtndevkeltrlvlegrisfedrlgrrlkllerslleelakeflakevairpgarelikwlkekGiklvivSggl 99
                +++D+DgTL+      ++ k+ ++    +++   +  ++ ++  +++ rr +ll +     + + +       ++ + el++ l+++G+ ++iv+g+ 
  MMETSP1137-20121227|4610_1  9 IFSDLDGTLIHFPI--WFEKHGVS----MSDADHEKHSAIVTNAQGESRRCRLLPKTT---MGDGV------VSDRTVELVAQLRKAGVLFFIVTGAR 91
                67777777777666..23332222....344444444444555555555555555443...22111......11345677888888888888888875 PP

>> TIGR01454  AHBA_synth_RP: AHBA synthesis associated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   9.5e-05     0.056      73     124 ..      63     111 ..      54     116 .. 0.88
   2 ?   -3.2   0.0       2.1   1.2e+03     143     179 ..     226     262 ..     221     280 .. 0.66

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 9.5e-05
   TIGR01454  73 evevfegvpellaelradglgtaiatgksgprarsllealgllelldevigs 124
                 +  v + + el+a+lr+ g+   i+tg   +r  ++le l +l+  d v+g 
  MMETSP1137-20121227|4610_1  63 DGVVSDRTVELVAQLRKAGVLFFIVTG---ARKSTVLERLPFLPDADAVVGE 111
                 556778899****************96...79999***************95 PP

  == domain 2    score: -3.2 bits;  conditional E-value: 2.1
   TIGR01454 143 lldvaaeaavmvgdalidlasaraagvaavaalwget 179
                  l   +e++  + d   dl  a   gv  + al +++
  MMETSP1137-20121227|4610_1 226 VLAXKPEECACLFDDDNDLGMAAQCGVHLLPALTSDS 262
                 5666777777777777888888888887777776544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (303 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       123  (0.0299854); expected 82.0 (0.02)
Passed bias filter:                      123  (0.0299854); expected 82.0 (0.02)
Passed Vit filter:                        24  (0.0058508); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.31u 0.15s 00:00:00.46 Elapsed: 00:00:00.56
# Mc/sec: 714.16
//
Query:       MMETSP1137-20121227|4611_1  [L=256]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00017   18.9   0.0    0.00017   18.9   0.0    1.5  2  TIGR02349 DnaJ_bact: chaperone protein DnaJ
     0.0042   13.3   0.0     0.0057   12.9   0.0    1.1  1  TIGR03835 termin_org_DnaJ: terminal organelle assembly protein TopJ
     0.0096   13.9   0.1      0.017   13.1   0.0    1.4  1  TIGR00714 hscB: Fe-S protein assembly co-chaperone HscB


Domain annotation for each model (and alignments):
>> TIGR02349  DnaJ_bact: chaperone protein DnaJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.1       0.5   6.9e+02     155     170 ..      29      43 ..      26      47 .. 0.73
   2 !   18.9   0.0   1.2e-07   0.00017      10      50 ..      90     129 ..      86     145 .. 0.85

  Alignments for each domain:
  == domain 1    score: -2.8 bits;  conditional E-value: 0.5
   TIGR02349 155 kkgsklktCktCgGtG 170
                  k+++++tC+ C+G+G
  MMETSP1137-20121227|4611_1  29 AKQAGPRTCS-CSGSG 43 
                 5677788885.88888 PP

  == domain 2    score: 18.9 bits;  conditional E-value: 1.2e-07
   TIGR02349  10 kdAseeeikkAYrklakkyHPDrnkgekeaeekfkeineAy 50 
                  + +++++k+ +++la + HPD++   ++a e+f e  + y
  MMETSP1137-20121227|4611_1  90 SNVDAATLKRHFKSLAAQLHPDVSG-AHDAAERFAELRDEY 129
                 5678899*****************9.99********98877 PP

>> TIGR03835  termin_org_DnaJ: terminal organelle assembly protein TopJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.9   0.0   4.1e-06    0.0057      11      50 ..      89     128 ..      85     134 .. 0.88

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 4.1e-06
   TIGR03835  11 drDadeqeikkafrkLakkyhPDrnkaadaakifaeinea 50 
                   + d   +k+ f+ La + hPD   a daa+ fae+ + 
  MMETSP1137-20121227|4611_1  89 PSNVDAATLKRHFKSLAAQLHPDVSGAHDAAERFAELRDE 128
                 56678889****************************9765 PP

>> TIGR00714  hscB: Fe-S protein assembly co-chaperone HscB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.1   0.0   1.2e-05     0.017       3      27 ..      92     116 ..      90     132 .. 0.77

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 1.2e-05
   TIGR00714   3 lDekaLrkryrklQkqyHPDvsksa 27 
                 +D  +L+++++ l +q+HPDvs+  
  MMETSP1137-20121227|4611_1  92 VDAATLKRHFKSLAAQLHPDVSGAH 116
                 7999****************77642 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (256 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        85  (0.0207216); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.23u 0.15s 00:00:00.38 Elapsed: 00:00:00.34
# Mc/sec: 993.80
//
Query:       MMETSP1137-20121227|4612_1  [L=255]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.7e-39  133.1   0.0    3.2e-39  132.9   0.0    1.0  1  TIGR01830 3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase
    5.7e-33  112.4   0.1    6.6e-33  112.2   0.0    1.0  1  TIGR01829 AcAcCoA_reduct: acetoacetyl-CoA reductase
    1.2e-31  107.9   0.1      3e-31  106.6   0.1    1.6  1  TIGR02415 23BDH: acetoin reductases
    3.3e-26   89.9   0.6    7.8e-26   88.7   0.7    1.4  2  TIGR01963 PHB_DH: 3-hydroxybutyrate dehydrogenase
    9.6e-25   84.8   4.0    1.1e-24   84.6   2.8    1.0  1  TIGR02632 RhaD_aldol-ADH: rhamnulose-1-phosphate aldolase/alcohol dehydrogenase
      1e-24   85.1   3.8    1.2e-24   84.9   2.6    1.1  1  TIGR03206 benzo_BadH: 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase
    1.2e-24   85.0   0.1    1.5e-24   84.7   0.1    1.1  1  TIGR01832 kduD: 2-deoxy-D-gluconate 3-dehydrogenase
    3.1e-23   80.4   2.6    2.6e-21   74.1   1.8    2.0  1  TIGR03971 SDR_subfam_1: oxidoreductase, SDR family
    9.7e-22   75.3   1.2    1.2e-21   74.9   0.8    1.1  1  TIGR03325 BphB_TodD: cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase
    3.1e-19   67.1   1.5    3.8e-19   66.8   1.1    1.1  1  TIGR01831 fabG_rel: putative 3-oxoacyl-(acyl-carrier-protein) reductase
    1.6e-12   44.9   2.9    4.1e-12   43.6   2.0    1.7  1  TIGR02685 pter_reduc_Leis: pteridine reductase
    0.00028   15.4   0.2    0.00034   15.2   0.2    1.0  1  TIGR02813 omega_3_PfaA: polyketide-type polyunsaturated fatty acid synthase PfaA
     0.0011   16.2   0.1     0.0033   14.7   0.1    1.8  1  TIGR01500 sepiapter_red: sepiapterin reductase
     0.0021   14.9   0.3     0.0031   14.4   0.2    1.4  1  TIGR02824 quinone_pig3: putative NAD(P)H quinone oxidoreductase, PIG3 family
     0.0081   13.5   0.3       0.01   13.2   0.2    1.1  1  TIGR01289 LPOR: light-dependent protochlorophyllide reductase


Domain annotation for each model (and alignments):
>> TIGR01830  3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  132.9   0.0   1.2e-41   3.2e-39       1     238 [.       7     251 ..       7     252 .. 0.88

  Alignments for each domain:
  == domain 1    score: 132.9 bits;  conditional E-value: 1.2e-41
   TIGR01830   1 alvtGasrgiGkaiakklakegakvviterskeekaeelaeelkeagvkaaavkldvsdeeevkelveeveeelg.eidilvnnAGitrDklllrmke.....edwdevikvnLkgvfnvtkavlkkmik......krsGriinissvvgllGnagqanYaasKaGligltkslakElasrnitvnavaPGfietdmteklsekvkkkileqipl.krlgkpeevaaavafLasdeasyitGqvlkvdGGl 238
                 al+ G++ g+G+a a++l + ga+v+i +  ++e  +++a+   e g++aa +++d +d+++v+++++e+e+ +g  +++ vn AG+   +  l+ k      e +++ ++vn+ g+fnvt+ ++++m+        ++G ++n +s++++ G+agq+ YaasK+ ++++t  la++la ++i+v +vaPG  +t+m +  +  v++++++q    krlg+pee a++v  +      +++G+v+++dGG+
  MMETSP1137-20121227|4612_1   7 ALISGGGSGLGRAAATRLLQLGARVLIADLPSSE-GASVAA---ELGANAAFAAADCTDTAQVSQALDECERVFGkPVNVAVNCAGVLCASKTLNRKGaahalELFEQTLRVNVVGTFNVTRLATQRMLSlpadgdGQRGVVVNTASIAAFDGQAGQVAYAASKGAIVSMTLPLARDLAPHGIRVCTVAPGVFTTPMMDGAPLAVREALEAQALFpKRLGRPEEYARMVEAILT--NPFLNGEVIRLDGGV 251
                 79**************************886655.345555...556679***********************98569*********8877777665412222679**********************96333333689*********************************************************************998865549************98776..79************7 PP

>> TIGR01829  AcAcCoA_reduct: acetoacetyl-CoA reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  112.2   0.0   2.4e-35   6.6e-33       1     242 []       5     253 ..       5     253 .. 0.86

  Alignments for each domain:
  == domain 1    score: 112.2 bits;  conditional E-value: 2.4e-35
   TIGR01829   1 rvalvtGglgGiGtaickrlakdGykvvanvapneerakewlqekevegfdvavvkadvssfeeakaavakveaelG.pvdvlvnnaGit.rdavfkkmtkeq....Weevidtnlnsvfnvtrpviegml......ergfGriinissvnGlkGqfGqanysaakaGliGftkalaqegakkgvtvnviaPGyiatemvkavredvlkkivaq.iPvkrlgkpeeiaaavaflaseeagyvtGatlsvnGGlym 242
                 r+al+ Gg  G+G+a ++rl + G +v+ +  p +e a+    e    g + a++ ad +++ + ++a+++ e   G pv+v vn+aG+    +++++  +++    +e+ +++n+ + fnvtr  ++ ml      + + G ++n +s+    Gq+Gq+ y+a+k  ++ +t  la++ a +g+ v ++aPG  +t+m+   +  v++++ aq +  krlg+pee a++v  + +    ++ G+ + ++GG  m
  MMETSP1137-20121227|4612_1   5 RIALISGGGSGLGRAAATRLLQLGARVLIADLPSSEGASVA-AEL---GANAAFAAADCTDTAQVSQALDECERVFGkPVNVAVNCAGVLcASKTLNRKGAAHalelFEQTLRVNVVGTFNVTRLATQRMLslpadgDGQRGVVVNTASIAAFDGQAGQVAYAASKGAIVSMTLPLARDLAPHGIRVCTVAPGVFTTPMMDGAPLAVREALEAQaLFPKRLGRPEEYARMVEAILT--NPFLNGEVIRLDGGVRM 253
                 8**************************98888877766543.333...45578999*******************9956*********85256677765544323338999******************97444333457899*******************************************************************998834569************98776..579**********9866 PP

>> TIGR02415  23BDH: acetoin reductases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  106.6   0.1   1.1e-33     3e-31       1     251 [.       5     251 ..       5     254 .. 0.81

  Alignments for each domain:
  == domain 1    score: 106.6 bits;  conditional E-value: 1.1e-33
   TIGR02415   1 kvalvtGaaqGiGkaiaerLakdGfavavadlneetaketakelkekgtkavavkldvsdkseveeaveqaveklGe.ldvlvnnaGv.alvtpileite....eeleklynvnvkgvlfGiqaaaekf.....kklkhkGkiinaasiagvegspelsaysstkfavrgltqtaakeLakkgitvnayaPGivktemreeideklaelagkeigekleefsseiklGresePedvaelvsflasedsdyitGqsilvdGGl 251
                 ++al+ G++ G+G+a a+rL + G  v +adl+  + + +a el   g +a +  +d +d ++v +a++++ + +G+ ++v vn aGv +++++++  +     e +e+   vnv g++   + a++++     +  +++G ++n asia+  g++ + ay+++k a+ ++t   a++La++gi v + aPG+  t+m++    ++ e+            ++++   r  +Pe+ a +v  + +    ++ G +i +dGG+
  MMETSP1137-20121227|4612_1   5 RIALISGGGSGLGRAAATRLLQLGARVLIADLPSSEGASVAAEL---GANAAFAAADCTDTAQVSQALDECERVFGKpVNVAVNCAGVlCASKTLNRKGAahalELFEQTLRVNVVGTFNVTRLATQRMlslpaDGDGQRGVVVNTASIAAFDGQAGQVAYAASKGAIVSMTLPLARDLAPHGIRVCTVAPGVFTTPMMDGAPLAVREA----------LEAQALFPKRLGRPEEYARMVEAILT--NPFLNGEVIRLDGGV 251
                 69*******************************99988888776...899**************************869********846677776554322227789999********9999999887232223457889*********************************************************98754333222..........22233333455567777777764443..357777777777776 PP

>> TIGR01963  PHB_DH: 3-hydroxybutyrate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.7   0.7   2.8e-28   7.8e-26       2     189 ..       5     201 ..       4     214 .. 0.88
   2 ?   -2.8   0.0       2.3   6.3e+02     114     251 ..     239     250 ..     220     254 .. 0.57

  Alignments for each domain:
  == domain 1    score: 88.7 bits;  conditional E-value: 2.8e-28
   TIGR01963   2 kvalvtGaasGiglaiakelaaaGakvvvndleeeaaeaaakeleeaggevlalkadvtkeeeiadlieavaaefgs.ldiLvnnAGiqhvapi.....eefptekfekiiavnltsafhtiraalpimk......kqgwGriiniasvhglvasafKsaYvaaKHglvGltKvlAlEvAetgitanaicPgyvrtpLve 189
                 ++al+ G +sG+g+a a++l + Ga+v++ dl + +    a+ ++e g++++  +ad t+++++++ +++ ++ fg+ +++ vn AG+   ++        ++ e fe+ + vn+ ++f ++r a   m       + ++G+++n as+ ++ + a + aY a+K ++v +t  lA + A +gi++ +++Pg  +tp+++
  MMETSP1137-20121227|4612_1   5 RIALISGGGSGLGRAAATRLLQLGARVLIADLPSSEG---ASVAAELGANAAFAAADCTDTAQVSQALDECERVFGKpVNVAVNCAGVLCASKTlnrkgAAHALELFEQTLRVNVVGTFNVTRLATQRMLslpadgDGQRGVVVNTASIAAFDGQAGQVAYAASKGAIVSMTLPLARDLAPHGIRVCTVAPGVFTTPMMD 201
                 789*****************************86544...4566788999999***********************857*********87765422222468999******************99888752222225789*********************************************************976 PP

  == domain 2    score: -2.8 bits;  conditional E-value: 2.3
   TIGR01963 114 fhtiraalpimkkqgwGriiniasvhglvasafKsaYvaaKHglvGltKvlAlEvAetgitanaicPgyvrtpLvekqiadqaktrgiseeqvvkevllkkqptkrfvtveevaelalflasdaaaqitGqalsldgG 251
                 f                                                                                                                              ++G+ + ldgG
  MMETSP1137-20121227|4612_1 239 F------------------------------------------------------------------------------------------------------------------------------LNGEVIRLDGG 250
                 3..............................................................................................................................45666666666 PP

>> TIGR02632  RhaD_aldol-ADH: rhamnulose-1-phosphate aldolase/alcohol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.6   2.8   4.1e-27   1.1e-24     412     597 ..       2     193 ..       1     213 [. 0.87

  Alignments for each domain:
  == domain 1    score: 84.6 bits;  conditional E-value: 4.1e-27
   TIGR02632 412 larrvalvtGgasGiGrevarrlvdeGahvvladldaeaaeavaaelvdkfGadkavalkldvtdeeavkaafaevalayGG.vdivvnnaGiavskpleete.....leeWdlnldilatGyflvareaarllrk.....qglggnlvfiasknavvakknalaysaakaaeahlvrllaielaelgirvntvaPd 597
                 l +r+al+ Gg+sG+Gr+ a rl + Ga v++adl + + ++vaael     a++a a  +d td  +v +a++e  + +G  v++ vn aG+  ++++ +++     le ++ +l +++ G f v+r a + +        g  g +v +as  a   + +++ay+a+k a + +   la +la++girv tvaP 
  MMETSP1137-20121227|4612_1   2 LQSRIALISGGGSGLGRAAATRLLQLGARVLIADLPSSEGASVAAELG----ANAAFA-AADCTDTAQVSQALDECERVFGKpVNVAVNCAGVLCASKTLNRKgaahaLELFEQTLRVNVVGTFNVTRLATQRMLSlpadgDGQRGVVVNTASIAAFDGQAGQVAYAASKGAIVSMTLPLARDLAPHGIRVCTVAPG 193
                 6789*****************************************996....777776.68********************559*********99888776653222356688899**************988865222124555779999********************************************96 PP

>> TIGR03206  benzo_BadH: 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.9   2.6   4.5e-27   1.2e-24       1     250 []       2     253 ..       2     253 .. 0.84

  Alignments for each domain:
  == domain 1    score: 84.9 bits;  conditional E-value: 4.5e-27
   TIGR03206   1 lkdkvaivtgggggiggaicrrfaeegakvavldlnaeaaekvaaairekggkaeavavditdrasvdaavaaaeealg.pvdvlvnnagwdvlkpflkteka.....ewerliainltgalymhhavlkgmv......erkagrivniasdaarvgssgeavyaackgglvafsktlarelarhgitvnvvcpgptdtalledvkseaekpeklieaf.traiplgrlgkpddlagailflasddaafitgqvlsvsggltm 250
                 l++++a+++ggg g+g a   r+ + ga+v + dl       vaa+    g +a   a+d td a v  a+  +e+ +g pv+v vn ag     + l+ + a      +e+ + +n++g++ +     + m+      + ++g +vn as aa  g +g+  yaa kg +v+++  lar+la hgi v  v pg   t++++        p  ++ea+ ++a+   rlg+p++ a  +  + +    f+ g+v+ + gg+ m
  MMETSP1137-20121227|4612_1   2 LQSRIALISGGGSGLGRAAATRLLQLGARVLIADLPSSEGASVAAE---LGANAAFAAADCTDTAQVSQALDECERVFGkPVNVAVNCAGVLCASKTLNRKGAahaleLFEQTLRVNVVGTFNVTRLATQRMLslpadgDGQRGVVVNTASIAAFDGQAGQVAYAASKGAIVSMTLPLARDLAPHGIRVCTVAPGVFTTPMMDGA------PLAVREALeAQALFPKRLGRPEEYARMVEAILT--NPFLNGEVIRLDGGVRM 253
                 68899******************************99988888875...5888999999******************9989*********876655554433212222699***********99988887776333322568899*******************************************************99864......44555555235666689*****99988876655..57999999999999877 PP

>> TIGR01832  kduD: 2-deoxy-D-gluconate 3-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.7   0.1   5.4e-27   1.5e-24       3     244 ..       2     250 ..       1     253 [. 0.82

  Alignments for each domain:
  == domain 1    score: 84.7 bits;  conditional E-value: 5.4e-27
   TIGR01832   3 leGkvalvtGantGlGqgiavglaeaGadivgvgiselsetqekvealGrkflslkadladeeaakalvdeaveeag.kidilvnnaGiirredave.....fsekdwddvlnvnlkavfllsqavakkllk.....qGrkgkiiniasllsfqGGirvpsytasksavaGltkllanewakkginvnaiaPGyletnntealradekrnaaileriPagrwGepedlagaavflassasdyvnGailavdGG 244
                 l+ ++al++G  +GlG++ a  l + Ga ++ ++    se ++  ++lG+++    ad +d++++++ +de    +g  +++ vn aG++  +++++      + + +++ l vn+   f +++ +++++l      +G++g ++n as+ +f G     +y+ask a++ +t  la ++a +gi+v ++aPG ++t   +     + r+a   + +   r G+pe+ a  +   a  +  ++nG ++ +dGG
  MMETSP1137-20121227|4612_1   2 LQSRIALISGGGSGLGRAAATRLLQLGARVLIADLP-SSEGASVAAELGANAAFAAADCTDTAQVSQALDECERVFGkPVNVAVNCAGVLCASKTLNrkgaaHALELFEQTLRVNVVGTFNVTRLATQRMLSlpadgDGQRGVVVNTASIAAFDGQAGQVAYAASKGAIVSMTLPLARDLAPHGIRVCTVAPGVFTTPMMDGAPL-AVREALEAQALFPKRLGRPEEYARMVE--AILTNPFLNGEVIRLDGG 250
                 7899*************************9987765.578999999******************************956**********987777651111134456899********************96555446899*****************************************************99976544322.334333344444457788877665443..334556788888888877 PP

>> TIGR03971  SDR_subfam_1: oxidoreductase, SDR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.1   1.8   9.5e-24   2.6e-21       1     210 [.       2     205 ..       2     251 .. 0.81

  Alignments for each domain:
  == domain 1    score: 74.1 bits;  conditional E-value: 9.5e-24
   TIGR03971   1 leGkvalitGaarGqGraeavrlaaeGadiiaidlceplsdvvtypaatredldetaklvealGrkvlarkadvrkleelravveegveefGr.ldvvvanaGvlsygrafelse.....eqWdtvldvnlkGvWktvkavvPalie.....rknGGsiiivssvaglkalpglahyaaakhGlvgltktlanelaeygirvnsihPtsvdtamiepeamr 210
                 l+ ++ali G   G Gra+a rl + Ga ++  dl ++                  a++  +lG  ++   ad  + +++ ++++e   +fG+ ++v v+ aGvl  +++ + +      e ++++l vn+ G++++ + +   ++       ++ G+++ ++s a+  +  g++ yaa+k  +v++t  la++la++girv ++ P    t+m++ +a  
  MMETSP1137-20121227|4612_1   2 LQSRIALISGGGSGLGRAAATRLLQLGARVLIADLPSSE----------------GASVAAELGANAAFAAADCTDTAQVSQALDECERVFGKpVNVAVNCAGVLCASKTLNRKGaahalELFEQTLRVNVVGTFNVTRLATQRMLSlpadgDGQRGVVVNTASIAAFDGQAGQVAYAASKGAIVSMTLPLARDLAPHGIRVCTVAPGVFTTPMMD-GAPL 205
                 6789**************************999885443................4455567899999999*********************989**********9999887653222237799*********************964332246679**********************************************************9.3332 PP

>> TIGR03325  BphB_TodD: cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.9   0.8   4.5e-24   1.2e-21       3     193 ..       2     201 ..       1     216 [. 0.89

  Alignments for each domain:
  == domain 1    score: 74.9 bits;  conditional E-value: 4.5e-24
   TIGR03325   3 lkdevvlvtggasglgralvdrfvaegarvavldksaagleeleaahgdkvvgvegdvrllddhkeavarcveafgk.ldtlipnagiwdystalvdipddrideafdevfeinvkgyllavkaalpalva.......srgsviftvsnagfypngggalytaakhavvglvkelayelapy.vrvngvapgglstdlrg 193
                 l+ +++l++gg+sglgra   r +  garv + d  + +   + a+ g++    + d    ++  +a ++c   fgk +++ ++ ag+   s +l      +  e f++  ++nv g +   + a   +++        rg v+ t s a f  + g + y+a+k a+v +   la +lap+ +rv  vapg ++t +  
  MMETSP1137-20121227|4612_1   2 LQSRIALISGGGSGLGRAAATRLLQLGARVLIADLPSSEGASVAAELGANAAFAAADCTDTAQVSQALDECERVFGKpVNVAVNCAGVLCASKTLNRKGAAHALELFEQTLRVNVVGTFNVTRLATQRMLSlpadgdgQRGVVVNTASIAAFDGQAGQVAYAASKGAIVSMTLPLARDLAPHgIRVCTVAPGVFTTPMMD 201
                 7899******************************98888899999999999999**********************9899*************************************9877665544333212222236999***************************************98*********99887655 PP

>> TIGR01831  fabG_rel: putative 3-oxoacyl-(acyl-carrier-protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.8   1.1   1.4e-21   3.8e-19       2     237 ..       8     250 ..       7     252 .. 0.77

  Alignments for each domain:
  == domain 1    score: 66.8 bits;  conditional E-value: 1.4e-21
   TIGR01831   2 lvtgasrgigraialklaadgfeiavhyrsdradaeesvaairaqggnarllkfdvadrvavrevleadiaehgayygv.vlnagi.......ardaafpalseedwdavietnldgfynvihplvmpmira.....rkggriitlasvsgvmgnrgqvnysaakagligatkalavelakrkitvnciapglidtemvaevekdlkealklvpm..krvgkaeevaalaaflmsddaayvtrqvisvngg 237
                 l++g   g+gra a++l   g  + +      ++  +++a++   g+na +   d +d  +v ++l++     g    v v +ag+       +r  a  al  e ++  ++ n+ g +nv +  +  m+ +      + g ++  as++   g+ gqv y+a+k  ++  t  la +la   i v  +apg+  t m++  + +++eal+   +  kr+g++ee a ++  ++++   ++  +vi ++gg
  MMETSP1137-20121227|4612_1   8 LISGGGSGLGRAAATRLLQLGARVLIADLP-SSEGASVAAEL---GANAAFAAADCTDTAQVSQALDECERVFGKPVNVaVNCAGVlcasktlNRKGAAHAL--ELFEQTLRVNVVGTFNVTRLATQRMLSLpadgdGQRGVVVNTASIAAFDGQAGQVAYAASKGAIVSMTLPLARDLAPHGIRVCTVAPGVFTTPMMDGAPLAVREALEAQALfpKRLGRPEEYARMVEAILTN--PFLNGEVIRLDGG 250
                 789999****************99886544.44444566665...666777777777777777777654444444333324444442222111566665555..78999*************999988887622222456779999***************************************************************986544349**********99988865..5777788887777 PP

>> TIGR02685  pter_reduc_Leis: pteridine reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.6   2.0   1.5e-14   4.1e-12       3     263 ..       6     252 ..       4     254 .. 0.82

  Alignments for each domain:
  == domain 1    score: 43.6 bits;  conditional E-value: 1.5e-14
   TIGR02685   3 aalvtGaakriGrsiavklhqeGyrvvlhyrrsaeaasslaaelnaeransavvvkadlsnsasllssceeiidacfrafGr.cdvlvnnasafyptpllrgdaeegaaekkslevqvaelfGsnaiaplllikafaqrqkgtraelrssnlsivnlvdamtdqpllgfslytmakealeGltrsaalelaslqirvngvapGlsllp..dampeevkeeyrrkvplgqreasaeqiadvviflvskkakyitGtiikvdGGls 263
                 +al++G+   +Gr+ a +l q G rv++    s+e a s+aael a+ a +a  + +d ++++         +d c r fG+  +v vn a     +  l++      + +++le    + +  n +  + +++  +qr+    a+  ++   +vn +   +     g   y+ +k a++ +t   a +la+++irv +vapG+   p  d  p  v+e    +  + +r    e+ a +v  ++++   ++ G +i++dGG+ 
  MMETSP1137-20121227|4612_1   6 IALISGGGSGLGRAAATRLLQLGARVLIADLPSSEGA-SVAAELGANAAFAAADC-TDTAQVSQA-------LDECERVFGKpVNVAVNCAGVLCASKTLNR-----KGAAHALELFE-QTLRVNVVGTFNVTRLATQRMLSLPADGDGQRGVVVNTASIAAFDGQAGQVAYAASKGAIVSMTLPLARDLAPHGIRVCTVAPGVFTTPmmDGAPLAVREALEAQALFPKRLGRPEEYARMVEAILTN--PFLNGEVIRLDGGVR 252
                 79**************************999998877.58999999877766555.344444444.......555567789846899999998777665543.....34445566543.4567899*******************************9999999999*************************************9988334578899999999999999999999999988777654..689999999999975 PP

>> TIGR02813  omega_3_PfaA: polyketide-type polyunsaturated fatty acid synthase PfaA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.2   1.3e-06   0.00034    2084    2197 ..      40     170 ..      21     194 .. 0.74

  Alignments for each domain:
  == domain 1    score: 15.2 bits;  conditional E-value: 1.3e-06
   TIGR02813 2084 qalaaikavGasaeylsvdvsdsasvaatvaplnkll..ditGiihGaGvl.adkfiedk....tleelnavygtkvdGlesl..laa.......lnae.kvkllalfssaaGfyGntGqsdyaisndiln 2197
                  +  +  + +Ga+a ++++d +d+a v++++++  ++   ++   +  aGvl a k ++ k    +le +++     v G  ++  la+        + + +   ++  +s a f G +Gq  ya s   + 
  MMETSP1137-20121227|4612_1   40 EGASVAAELGANAAFAAADCTDTAQVSQALDECERVFgkPVNVAVNCAGVLcASKTLNRKgaahALELFEQTLRVNVVGTFNVtrLATqrmlslpADGDgQRGVVVNTASIAAFDGQAGQVAYAASKGAIV 170 
                  555667789*************************998889999*******9678999987444468888877666666655542222211111112334144456677899*************9976555 PP

>> TIGR01500  sepiapter_red: sepiapterin reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.1   1.2e-05    0.0033     108     202 ..     105     201 ..       5     217 .. 0.64

  Alignments for each domain:
  == domain 1    score: 14.7 bits;  conditional E-value: 1.2e-05
   TIGR01500 108 lsDsknvqkyydsnvtslvvltsellkklkel.qglektvvnlssLcaikpfkswalYCaskaaRdmffqvLaleek.edvkvLnYapGvlDtdmqs 202
                 l  +++  + +   ++ +  l+++ +  l+   +g   +vvn +s++a     +   Y ask a   +   La +   + ++v   apGv+ t m  
  MMETSP1137-20121227|4612_1 105 LELFEQTLRVNVVGTFNVTRLATQRMLSLPADgDGQRGVVVNTASIAAFDGQAGQVAYAASKGAIVSMTLPLARDLApHGIRVCTVAPGVFTTPMMD 201
                 44445555555555666666666666677655469999************************887777778999998899*************9975 PP

>> TIGR02824  quinone_pig3: putative NAD(P)H quinone oxidoreductase, PIG3 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.2   1.1e-05    0.0031     141     192 ..       5      57 ..       1     109 [. 0.82

  Alignments for each domain:
  == domain 1    score: 14.4 bits;  conditional E-value: 1.1e-05
   TIGR02824 141 etvLihggasGiGttaiqlakalgakvlvt.agsdekleaaekLGadvainyr 192
                   +Li gg sG+G +a +   +lga+vl++   s e +++a +LGa++a    
  MMETSP1137-20121227|4612_1   5 RIALISGGGSGLGRAAATRLLQLGARVLIAdLPSSEGASVAAELGANAAFAAA 57 
                 578************9999999****987537899999********9987654 PP

>> TIGR01289  LPOR: light-dependent protochlorophyllide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   0.2   3.8e-05      0.01       5     163 ..       6     168 ..       2     179 .. 0.74

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 3.8e-05
   TIGR01289   5 tviitgassglglaaakalvekgkwhvvmacrdlekaekaakslglpkdsytilkldlasldsvrkfveqf.resgrsldalvcnaavylpll....keplfsadgyelsvatnhlghfllsnllledlkk..sdekdkrliilgsvt.anskelagkvpikadlgd 163
                  ++i+g  sglg aaa  l++ g   v++a        ++a +lg ++   +    d +    v + +++  r  g+++++ v  a v         k   ++ + +e ++  n +g f +++l  + + +  +d + +r +++ + + a  +  ag+v   a  g 
  MMETSP1137-20121227|4612_1   6 IALISGGGSGLGRAAATRLLQLG-ARVLIADLPSSEGASVAAELGANA---AFAAADCTDTAQVSQALDECeRVFGKPVNVAVNCAGVLCASKtlnrKGAAHALELFEQTLRVNVVGTFNVTRLATQRMLSlpADGDGQRGVVVNTASiAAFDGQAGQVAYAASKGA 168
                 679********************.899999888888888999999765...456678888888888887762667*****999888887653311114556677889999999***********9887765123445567777766541555667788877776665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (255 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       181  (0.0441248); expected 82.0 (0.02)
Passed bias filter:                      130  (0.0316919); expected 82.0 (0.02)
Passed Vit filter:                        31  (0.00755729); expected 4.1 (0.001)
Passed Fwd filter:                        15  (0.00365675); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.41u 0.12s 00:00:00.53 Elapsed: 00:00:00.60
# Mc/sec: 560.95
//
Query:       MMETSP1137-20121227|4614_1  [L=83]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (83 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       120  (0.029254); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.15s 00:00:00.29 Elapsed: 00:00:00.34
# Mc/sec: 322.21
//
Query:       MMETSP1137-20121227|4616_1  [L=106]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (106 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        46  (0.011214); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.38
# Mc/sec: 368.18
//
Query:       MMETSP1137-20121227|4618_1  [L=83]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (83 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        24  (0.0058508); expected 82.0 (0.02)
Passed bias filter:                       23  (0.00560702); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.18s 00:00:00.31 Elapsed: 00:00:00.31
# Mc/sec: 353.39
//
Query:       MMETSP1137-20121227|4619_1  [L=485]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   2.9e-285  943.8   0.2   3.3e-285  943.6   0.2    1.0  1  TIGR01040 V-ATPase_V1_B: V-type ATPase, B subunit
   9.5e-216  714.4   0.8   1.1e-215  714.2   0.5    1.0  1  TIGR01041 ATP_syn_B_arch: ATP synthase archaeal, B subunit
    3.4e-53  178.8   0.6    2.2e-52  176.1   0.4    1.8  1  TIGR03496 FliI_clade1: flagellar protein export ATPase FliI
    4.4e-52  175.1   0.2    1.3e-51  173.5   0.2    1.6  1  TIGR01026 fliI_yscN: ATPase FliI/YscN family
    1.1e-48  163.8   0.3    4.3e-48  161.8   0.2    1.7  1  TIGR03498 FliI_clade3: flagellar protein export ATPase FliI
    1.3e-48  163.6   0.3    3.9e-48  162.0   0.2    1.6  1  TIGR02546 III_secr_ATP: type III secretion apparatus H+-transporting two-sector ATPase
    7.7e-48  161.3   0.3    3.9e-47  158.9   0.2    1.8  1  TIGR03497 FliI_clade2: flagellar protein export ATPase FliI
    1.1e-40  137.6   0.2    1.6e-40  137.1   0.1    1.2  1  TIGR00962 atpA: ATP synthase F1, alpha subunit
    2.1e-37  126.6   1.7    1.1e-24   84.6   0.0    2.2  2  TIGR01043 ATP_syn_A_arch: ATP synthase archaeal, A subunit
    3.3e-37  126.2   0.6    4.8e-37  125.6   0.4    1.2  1  TIGR01039 atpD: ATP synthase F1, beta subunit
    8.2e-34  114.9   0.1    1.2e-33  114.3   0.1    1.2  1  TIGR03305 alt_F1F0_F1_bet: alternate F1F0 ATPase, F1 subunit beta
    2.1e-31  107.0   0.4    1.3e-22   77.9   0.0    2.1  2  TIGR01042 V-ATPase_V1_A: V-type ATPase, A subunit
    2.1e-29  100.4   0.5    4.3e-29   99.4   0.3    1.4  1  TIGR03324 alt_F1F0_F1_al: alternate F1F0 ATPase, F1 subunit alpha


Domain annotation for each model (and alignments):
>> TIGR01040  V-ATPase_V1_B: V-type ATPase, B subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  943.6   0.2    1e-287  3.3e-285       1     463 [.      21     484 ..      21     485 .] 0.99

  Alignments for each domain:
  == domain 1    score: 943.6 bits;  conditional E-value: 1e-287
   TIGR01040   1 eyktvsgvngplvildevkfpkfaeivnlkladgtvrkgqvlevsgekavvqvfegtsgidakkttveftgdilrlpvsedmlgrvfngsgkpidkgpkvlaedyldingqpinpkariypeemiqtgisaidvmnsiargqkiplfsaaglphneiaaqicrqaglvkksekd.vkdekeenfaivfaamgvnletarffkqdfeengslervtlflnlandptieriitprlalttaeylayekekhvlviltdmssyadalrevsaareevpgrrgfpgymytdlatiyeragrvegrngsitqipiltmpnddithpipdltgyitegqiyvdrqlhnrqiyppinvlpslsrlmksaigegmtrkdhsdvsnqlyakyaigkdvaamkavvgeealssedllyleflekfekkfiaqgayesrtifesldlawellrifpkellkripkkileefyere 463
                 ey+tv gvngplvild+v+ p+faeivnl+l+dgt+r+gqvlev+g+kavvqvfegt+g+d+k t+veftg i+ +pvsedmlgr+fngsgkpidkgp+vlae++ldi+gqpinp+ r+ypeemiqtgis+id+mns+argqkiplfsaaglphneiaaqicrqaglvk+++k+  +d++ee faivfaamgvn+etarffkqdfeeng+lervtlflnlandptieriitpr+alttaeylayek+khvlvi tdmssyadalrevsaareevpgrrg+pgymytdlatiyeragrvegr+gsitq+piltmpnddithpipdltgyitegqiyvdrql+nrqiyppinvlpslsrlmksaigegmtr+dh+dvsnqlya+yaigkdv+amkavvgeeals+ed+lylefl+kfe kf++qgaye+rtife+l++aw llr fpke+lkrip+k+l+ fy+r+
  MMETSP1137-20121227|4619_1  21 EYRTVIGVNGPLVILDNVRNPQFAEIVNLTLQDGTERTGQVLEVQGSKAVVQVFEGTAGVDNKGTSVEFTGSIMTTPVSEDMLGRIFNGSGKPIDKGPAVLAEEFLDIQGQPINPQVRTYPEEMIQTGISTIDCMNSVARGQKIPLFSAAGLPHNEIAAQICRQAGLVKQNTKAtTSDDSEESFAIVFAAMGVNMETARFFKQDFEENGALERVTLFLNLANDPTIERIITPRIALTTAEYLAYEKDKHVLVIATDMSSYADALREVSAAREEVPGRRGYPGYMYTDLATIYERAGRVEGRSGSITQFPILTMPNDDITHPIPDLTGYITEGQIYVDRQLYNRQIYPPINVLPSLSRLMKSAIGEGMTRRDHGDVSNQLYANYAIGKDVMAMKAVVGEEALSQEDHLYLEFLDKFEGKFVNQGAYENRTIFETLEIAWGLLRTFPKEMLKRIPEKTLKGFYARS 484
                 6************************************************************************************************************************************************************************97765156788*****************************************************************************************************************************************************************************************************************************************************************************************997 PP

>> TIGR01041  ATP_syn_B_arch: ATP synthase archaeal, B subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  714.2   0.5  3.4e-218  1.1e-215       1     452 [.      21     482 ..      21     485 .] 0.98

  Alignments for each domain:
  == domain 1    score: 714.2 bits;  conditional E-value: 3.4e-218
   TIGR01041   1 eyktiteikGplvlvekveevaydeiveielpdGekrrGqvldsseglvvvqvfegttgldkeatkvrflGetlklkvsedllGrilngsGepidgGpeivpderrdinGaalnpaareypeefiqtGisaidGlntlvrGqklpifsgsGlphnelalqiarqakvrgee..........sefavvfaalGitaeeanffkkdfektGaleravvflnladdpaverivtprlaltvaeylafekdlhvlviltdltnycealreisaareevpGrrGypGylytdlatlyeraGrvkGkkGsitqipiltmpdddithpipdltGyiteGqivlsrelhrkGiyppinvlpslsrlmkdGiGeGktredhkdvsdqlyaayaegrdlrdlvaivGeealserdrkylkfadefekkfvkqgrkedrsieetldlgwellsvlpeselkrvdeeliekyhp 452
                 ey+t+  ++Gplv+ ++v++  + eiv+++l+dG++r Gqvl+++ + +vvqvfegt g+d+++t+v f+G  +  +vsed+lGri+ngsG+pid Gp ++++e +di+G+++np+ r+ypee+iqtGis+id +n++ rGqk+p fs++Glphne+a+qi rqa + +++          ++fa+vfaa+G+++e a+ffk+dfe+ Galer+++flnla+dp++eri+tpr+alt+aeyla+ekd hvlvi td++ y++alre+saareevpGrrGypGy+ytdlat+yeraGrv+G+ Gsitq+piltmp+ddithpipdltGyiteGqi+++r+l+++ iyppinvlpslsrlmk+ iGeG tr dh dvs+qlya ya g+d+  + a+vGeeals+ d+ yl+f d+fe kfv+qg +e+r+i etl+++w ll ++p++ lkr+ e++++ ++ 
  MMETSP1137-20121227|4619_1  21 EYRTVIGVNGPLVILDNVRNPQFAEIVNLTLQDGTERTGQVLEVQGSKAVVQVFEGTAGVDNKGTSVEFTGSIMTTPVSEDMLGRIFNGSGKPIDKGPAVLAEEFLDIQGQPINPQVRTYPEEMIQTGISTIDCMNSVARGQKIPLFSAAGLPHNEIAAQICRQAGLVKQNtkattsddseESFAIVFAAMGVNMETARFFKQDFEENGALERVTLFLNLANDPTIERIITPRIALTTAEYLAYEKDKHVLVIATDMSSYADALREVSAAREEVPGRRGYPGYMYTDLATIYERAGRVEGRSGSITQFPILTMPNDDITHPIPDLTGYITEGQIYVDRQLYNRQIYPPINVLPSLSRLMKSAIGEGMTRRDHGDVSNQLYANYAIGKDVMAMKAVVGEEALSQEDHLYLEFLDKFEGKFVNQGAYENRTIFETLEIAWGLLRTFPKEMLKRIPEKTLKGFYA 482
                 8********************************************************************************************************************************************************************876666678888888899**********************************************************************************************************************************************************************************************************************************************************************************99986 PP

>> TIGR03496  FliI_clade1: flagellar protein export ATPase FliI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  176.1   0.4   6.9e-55   2.2e-52      17     372 ..      40     415 ..      24     455 .. 0.86

  Alignments for each domain:
  == domain 1    score: 176.1 bits;  conditional E-value: 6.9e-55
   TIGR03496  17 kasvgelveieeeegesveaevvgfeeeklllmpleevegla.lgakvvlleeekklpvgeellGrvidalgepldgkgaleaeeevsleaepinplkrerieevldvGvrainalltvgkGqrlglfagsGvGKsvLlgmlara.......tea...d......vvvvaLiGERgREvkefieknLgeeg.lkrsvvvaatadespllrlraaalataiaeyfr.dqgkdvLllmDSltRfAmAqReialaiGEppatkgYppsvfaklpkLvEraGngkegkGsitafytvLvegddqqdpiadaaraiLDGHivLsRelaeaghyPaidieaSiSRvmkkvvsee..hlkaarklkqllsryeenrdlisigaY 372
                 + +  e+v+++ ++g++ +++v++++++k+++  +e ++g+   g++v  + + ++ pv+e++lGr+++++g+p+d+ +a+ aee + ++ +pinp  r+  ee++++G+ +i+ + +v++Gq++ lf+++G+    + + + r+       t+a   d       +v a +G    E   f +++++e+g l+r  +    a+++++ r+ +  +a ++aey   +++k+vL++   ++ +A A Re++ a  E p  +gYp  +++ l+++ EraG+ + ++Gsit f  + + +dd + pi d +  i +G i ++R+l ++ +yP+i+++ S+SR+mk+++ e   +++      ql+++y   +d++++ a 
  MMETSP1137-20121227|4619_1  40 NPQFAEIVNLTLQDGTERTGQVLEVQGSKAVVQVFEGTAGVDnKGTSVEFTGSIMTTPVSEDMLGRIFNGSGKPIDKGPAVLAEEFLDIQGQPINPQVRTYPEEMIQTGISTIDCMNSVARGQKIPLFSAAGLPHNEIAAQICRQaglvkqnTKAttsDdseesfAIVFAAMGV-NMETARFFKQDFEENGaLERVTLFLNLANDPTIERIITPRIALTTAEYLAyEKDKHVLVIATDMSSYADALREVSAAREEVPGRRGYPGYMYTDLATIYERAGRVEGRSGSITQFPILTMPNDDITHPIPDLTGYITEGQIYVDRQLYNRQIYPPINVLPSLSRLMKSAIGEGmtRRDHGDVSNQLYANYAIGKDVMAMKAV 415
                 567789999999****************************952799***************************************************************************************99887776655322222223331113343443478888986.57999999****999835677778899*********************964789***************************************************999******9999999***********************************************9987511445566778999999999999988775 PP

>> TIGR01026  fliI_yscN: ATPase FliI/YscN family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  173.5   0.2   4.2e-54   1.3e-51      33     393 ..      32     412 ..      15     456 .. 0.83

  Alignments for each domain:
  == domain 1    score: 173.5 bits;  conditional E-value: 4.2e-54
   TIGR01026  33 llieakgpqasvGevclierkgsekkevvaevvgfegekvllmpyeevegve.agskvlaknealsvkvgegllGrvldalGkplDekgkaldnvekelitapinPlkrakieevlstGvrsidalltvgkGqrlGifaGsGvGkstLl.......Gmiaratead.........vnvialiGerGrevkefiekdLgeeg.lkrsvvvvatsDespllrlkgayvataiaeyfr.dqGkdvlllmDsvtrfakaqreigLaaGepPatkGytPsvfsllpklleraG..asekGsitafytvLveGDDlnePiaDevrailDGhivLsralaerglyPaidvlasisrllkaivseekkka..vrkfrellskykenedLiri 393
                 l+i  ++ + +  e+++++ +  + +e +++v+ ++g+k ++  +e ++gv  +g+ v ++++ ++++v+e++lGr+ +++Gkp+D+ + +l+++  ++  +pinP  r+  ee+++tG+ +id + +v++Gq++ +f+ +G     +        G++ ++t+a           +v a +G    e   f ++d  e+g l+r  +    ++++++ r+ +  +a + aey + ++ k+vl++   +  +a a re++ a  e P ++Gy+  +++ l+ + eraG  +  +Gsit f    +  DD++ Pi D +  i +G i ++r+l +r++yP+i+vl s+srl+k+ ++e ++++       +l++ y+  +d++ +
  MMETSP1137-20121227|4619_1  32 LVILDNVRNPQFAEIVNLTLQ--DGTERTGQVLEVQGSKAVVQVFEGTAGVDnKGTSVEFTGSIMTTPVSEDMLGRIFNGSGKPIDKGPAVLAEEFLDIQGQPINPQVRTYPEEMIQTGISTIDCMNSVARGQKIPLFSAAGLPHNEIAaqicrqaGLVKQNTKATtsddseesfAIVFAAMGV-NMETARFFKQDFEENGaLERVTLFLNLANDPTIERIITPRIALTTAEYLAyEKDKHVLVIATDMSSYADALREVSAAREEVPGRRGYPGYMYTDLATIYERAGrvEGRSGSITQFPILTMPNDDITHPIPDLTGYITEGQIYVDRQLYNRQIYPPINVLPSLSRLMKSAIGEGMTRRdhGDVSNQLYANYAIGKDVMAM 412
                 566677888888999999866..444569**********************6379**********************************999999999********************************************998776511222226666667775111232222346777775.478999*******9985788889999**********************97589**************************************************7556789*****999999*************************************************99876541156778899999877776654 PP

>> TIGR03498  FliI_clade3: flagellar protein export ATPase FliI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  161.8   0.2   1.4e-50   4.3e-48      21     364 ..      42     404 ..      24     419 .. 0.84

  Alignments for each domain:
  == domain 1    score: 161.8 bits;  conditional E-value: 1.4e-50
   TIGR03498  21 rlGdlveieaeegkkvlaevvgleedevllmpfeslegve.lgaavvveeealevrpeeswlGRvidalgepiDgkgalaegeaavpvkaeppaalsRkrveeklktGvrvidlfltlcrGqRlGifaGsGvGkstllsmlara..........aaaD......vvvialvGeRGRevrefleddlgeeg.lkrsvvvvatsDesplmRrkaayvalaiaeyfR.dqgkdvllllDsvtRfakaqReialaageppvarGYtpsvfselPrLLeRaGpGaegkGsitglftvLvdgDdhnePvaDavrgilDGhivldRaiaergryPainvlksvsRlakkvlsp..eekklvkrlrallarye 364
                 +  ++v+++ ++g++ ++ v+++++++++++ fe ++gv+  g++v  + + ++  ++e++lGR+ +  g+piD  g+   +e+   ++ +p+++  R+  ee ++tG+ +id + +++rGq++ +f+ +G+    + + + r+          ++ D      ++v a +G    e   f ++d+ e+g l+r  +    ++++++ R  ++ +al+ aey+  +++k+vl++   +  +a a Re++ a +e p  rGY+  ++++l  + eRaG  +  +Gsit +  + +  Dd + P+ D +  i +G i +dR++ +r  yP+invl s+sRl+k ++ +   +++      +l a+y+
  MMETSP1137-20121227|4619_1  42 QFAEIVNLTLQDGTERTGQVLEVQGSKAVVQVFEGTAGVDnKGTSVEFTGSIMTTPVSEDMLGRIFNGSGKPIDK-GPAVLAEEFLDIQGQPINPQVRTYPEEMIQTGISTIDCMNSVARGQKIPLFSAAGLPHNEIAAQICRQaglvkqntkaTTSDdseesfAIVFAAMGV-NMETARFFKQDFEENGaLERVTLFLNLANDPTIERIITPRIALTTAEYLAyEKDKHVLVIATDMSSYADALREVSAAREEVPGRRGYPGYMYTDLATIYERAGRVEGRSGSITQFPILTMPNDDITHPIPDLTGYITEGQIYVDRQLYNRQIYPPINVLPSLSRLMKSAIGEgmTRRDHGDVSNQLYANYA 404
                 5679999*******************************972689999999999*********************8.566666777999********************************************99988887765411111111113333222222346666665.468889999999999846777778899*********************964899**************************************************999*******999999***********************************************987651133444444555555555 PP

>> TIGR02546  III_secr_ATP: type III secretion apparatus H+-transporting two-sector ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  162.0   0.2   1.2e-50   3.9e-48      20     368 ..      37     404 ..      21     460 .. 0.83

  Alignments for each domain:
  == domain 1    score: 162.0 bits;  conditional E-value: 1.2e-50
   TIGR02546  20 vlpearvgelclikekekeseleaevvgfeedealLsplgelsgls.lgseviplgrplsikvgeelLGrvldglGrpldgkkelkakeikkrpldaepPdplsRqkieqplalGvraiDglltvgeGqRiGifaeaGvGkstLlsmiarga.......kad.........vivlaLiGeRGRevrefiekelgeekrkrsvlvvstsdrsslerlkaayvataiaeyfR.dqgkkvllllDsltRfaralreigLaaGepparrgyppsvfsslprlleRaGase..kGsitalYtvLvegddmndpiadevrsilDGhivLsrklaernhyPaiDvlaslsRvlkkvvskeh.kkaaakl.rellakyk 368
                  + + + +e+++++  ++ +e++ +v+ ++ ++a+++ ++ + g+  +g++v  +g+ +   v+e++LGr+ +g G+p+d+  ++ a+e    +++++p +p  R+  e+++++G+  iD +  v++Gq+i +f++aG     + ++i+r+a       ka+          iv+a +G      r f ++  ++ + +r  l ++ ++ +++er+ + ++a + aey   ++ k+vl++   ++ +a alre++ a  e p rrgyp  +++ l+ + eRaG  e  +Gsit +  + + +dd + pi d +  i +G i++ r+l +r+ yP+i+vl slsR++k+ + +   ++  + +  +l a+y+
  MMETSP1137-20121227|4619_1  37 NVRNPQFAEIVNLT-LQDGTERTGQVLEVQGSKAVVQVFEGTAGVDnKGTSVEFTGSIMTTPVSEDMLGRIFNGSGKPIDKGPAVLAEEFL--DIQGQPINPQVRTYPEEMIQTGISTIDCMNSVARGQKIPLFSAAGLPHNEIAAQICRQAglvkqntKATtsddseesfAIVFAAMGVNMETARFFKQDFEENGALERVTLFLNLANDPTIERIITPRIALTTAEYLAyEKDKHVLVIATDMSSYADALREVSAAREEVPGRRGYPGYMYTDLATIYERAGRVEgrSGSITQFPILTMPNDDITHPIPDLTGYITEGQIYVDRQLYNRQIYPPINVLPSLSRLMKSAIGEGMtRRDHGDVsNQLYANYA 404
                 45566788999998.6899999***********************725799*******************************988888655..*****************************************************999863223222244311233333358999999876555555555555567899999*************************86378999***********************************************865338******999999*********************************************9766554303333333145556665 PP

>> TIGR03497  FliI_clade2: flagellar protein export ATPase FliI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  158.9   0.2   1.2e-49   3.9e-47      11     405 ..      34     453 ..      24     458 .. 0.83

  Alignments for each domain:
  == domain 1    score: 158.9 bits;  conditional E-value: 1.2e-49
   TIGR03497  11 ieakgpkakiGelcsikkkeekkvlaevvgfkeekvlLmPleevegia.pgslveatgkklavkvgkellGkvldglGepldekelvkkkeklpleaeppnplkrkrikdvlevgvkaidglltvGkGqrvGifagsGvGkstllgmiar.......nakadin.........viaLvGerGrevrefiekdLgeeG.lkksvvvvatsdqpallrlkaalvataiaeyfr.dqGkkvllmmDsvtrfamaqrevglavgepPttkGytpsvfsllpklleraGk..sekGsitglytvLvdgDdlnePiaDavrgilDGhivLsreLaeknhyPaidvlksvsrvmeeivsee..hkelaeklrellavykeaedlikigaykkgs..nkkideaiekkekin.kfLkqkidekvtfeet 405
                 i  ++ + +  e+++++ +++++ + +v+ ++ +k+++  +e ++g+  +g++ve tg  ++ +v++++lG++++g G+p+d+   v  +e l ++ +p+np  r+  ++++++g+ +id + +v +Gq++ +f+++G     + + i r       n+ka            v a +G    e   f ++d+ e+G l++  +    +++p++ r+ +  +a + aey+  ++ k+vl++   +  +a+a rev+ a +e P ++Gy   +++ l+ + eraG+    +Gsit +  + +  Dd+ +Pi+D    i +G i+++r+L +++ yP i+vl s+sr+m++ + e   ++++ +   +l a+y   +d++ + a++     +++    +e+ +k + kf++q+  e+ t+ et
  MMETSP1137-20121227|4619_1  34 ILDNVRNPQFAEIVNLTLQDGTERTGQVLEVQGSKAVVQVFEGTAGVDnKGTSVEFTGSIMTTPVSEDMLGRIFNGSGKPIDKGPAVLAEEFLDIQGQPINPQVRTYPEEMIQTGISTIDCMNSVARGQKIPLFSAAGLPHNEIAAQICRqaglvkqNTKATTSddseesfaiVFAAMGV-NMETARFFKQDFEENGaLERVTLFLNLANDPTIERIITPRIALTTAEYLAyEKDKHVLVIATDMSSYADALREVSAAREEVPGRRGYPGYMYTDLATIYERAGRveGRSGSITQFPILTMPNDDITHPIPDLTGYITEGQIYVDRQLYNRQIYPPINVLPSLSRLMKSAIGEGmtRRDHGDVSNQLYANYAIGKDVMAMKAVVGEEalSQEDHLYLEFLDKFEgKFVNQGAYENRTIFET 453
                 4555567788999***99*****************************626899*****************************99999999999*********************************************999887655554111111166664322222322223444443.468899*********96788889999**********************954899*************************************************965568********99***********************************************99887751144455666778899999999999999864432345555566666666546777877777666555 PP

>> TIGR00962  atpA: ATP synthase F1, alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  137.1   0.1   5.2e-43   1.6e-40      47     375 ..      42     386 ..      13     409 .. 0.82

  Alignments for each domain:
  == domain 1    score: 137.1 bits;  conditional E-value: 5.2e-43
   TIGR00962  47 lskelief..egg..vkgialnleedsvGvvilGdysei.keGsevkrtgevlevpvGdallGrvvnalGepidGkGdieseefsavekkaPgvierksvkePlqtGikaidaliPiGrGqreliiGdrqtGktavai....dt.iinqkdsk........kdvkcvyvaiGqkestvaqvvekleekgaleytivvaasasdsaslqylaPyagvalaeyfrd.kgkdaliiyddlskqavayrqlslllrrPPGreayPGdvfylhsrlleraaklsdekGaGsltalPiietqagdvsayiPtnvisitdGqiflesdlfnsGirPainvGlsvsrvGgaaqika 375
                    e++++  ++g  ++g +l+++ ++  v ++  ++ + ++G++v+ tg+++ +pv + +lGr+ n  G+pid    + +eef  ++ +      r   +e +qtGi +id++  + rGq+  +          +a      + +++q   k        +    v+ a+G    t +   + +ee+gale  ++ +  a+d++  + ++P  + + aey  + k k++l+i  d+s  a a r++s      PGr  yPG ++   + + era ++     +Gs+t +Pi+    +d++  iP     it+Gqi+++ +l+n+ i P inv  s+sr+  +a    
  MMETSP1137-20121227|4619_1  42 QFAEIVNLtlQDGteRTGQVLEVQGSKAVVQVFEGTAGVdNKGTSVEFTGSIMTTPVSEDMLGRIFNGSGKPIDKGPAVLAEEFLDIQGQPINPQVRTYPEEMIQTGISTIDCMNSVARGQKIPLFSAAGLPHNEIAAqicrQAgLVKQNT-KattsddseESFAIVFAAMGVNMETARFFKQDFEENGALERVTLFLNLANDPTIERIITPRIALTTAEYLAYeKDKHVLVIATDMSSYADALREVSAAREEVPGRRGYPGYMYTDLATIYERAGRVEGR--SGSITQFPILTMPNDDITHPIPDLTGYITEGQIYVDRQLYNRQIYPPINVLPSLSRLMKSAIGEG 386
                 555665541144411456666666555555566555666268********************************888899******99876666669999**********************88877665555555431111441344443.3578888878899********************************************************9862689************************************9999*********9654..59******************************************************987775544 PP

>> TIGR01043  ATP_syn_A_arch: ATP synthase archaeal, A subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.0   0.4   5.8e-14   1.8e-11       5      93 ..      25     117 ..      21     148 .. 0.87
   2 !   84.6   0.0   3.5e-27   1.1e-24     283     523 ..     229     463 ..     211     478 .. 0.89

  Alignments for each domain:
  == domain 1    score: 41.0 bits;  conditional E-value: 5.8e-14
   TIGR01043   5 ivrvsGplvvaeglkgakmyevvkvg...eekliGeiiriegdkaviqvyeetsGik.pgepvestGaplsvelGpGllesiydGvqrpldvl 93 
                 ++ v+Gplv+ +++++ +  e+v+++    ++ +G++++++g kav+qv+e t+G+   g +ve tG+ ++  +   +l++i++G  +p+d+ 
  MMETSP1137-20121227|4619_1  25 VIGVNGPLVILDNVRNPQFAEIVNLTlqdGTERTGQVLEVQGSKAVVQVFEGTAGVDnKGTSVEFTGSIMTTPVSEDMLGRIFNGSGKPIDKG 117
                 789********************98632235679**********************726899***************************9975 PP

  == domain 2    score: 84.6 bits;  conditional E-value: 3.5e-27
   TIGR01043 283 pllertvliantsnmpvaareasiytGitiaeyfr.dmGydvalvadstsrwaealreisgrleempgeeGypaylasrlaefyeraGrvktlgseeregsvtvvgavsppGGdfsepvtqntlrivkvfwaldaklaerrhfpainwlqsysly.vdsvedwfaenvdeewrelrdealellqkeaelqeivrlvGsdalpekeklvlevarlireaflkqnafdevdtysspekqvkilkv 523
                   ler +l  n +n p   r  +  + +t aey   ++   v+++a   s +a+alre+s+  ee+pg  Gyp y+ + la  yeraGrv+      r+gs+t    ++ p  d++ p+ + t  i      +d +l +r+ +p in l s s   + ++ + ++     ++ ++ ++  +     +++  +  +vG++al+++++l le       +f++q a+++   + + e  + +l++
  MMETSP1137-20121227|4619_1 229 GALERVTLFLNLANDPTIERIITPRIALTTAEYLAyEKDKHVLVIATDMSSYADALREVSAAREEVPGRRGYPGYMYTDLATIYERAGRVE-----GRSGSITQFPILTMPNDDITHPIPDLTGYITEGQIYVDRQLYNRQIYPPINVLPSLSRLmKSAIGEGMT---RRDHGDVSNQLYANYAIGKDVMAMKAVVGEEALSQEDHLYLEFLDKFEGKFVNQGAYENRTIFETLEIAWGLLRT 463
                 5689*****************************86367889************************************************96.....579*****************************************************9651556666655...456667777777777778889999999********************************9999998888888776 PP

>> TIGR01039  atpD: ATP synthase F1, beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  125.6   0.4   1.5e-39   4.8e-37      23     400 ..      41     436 ..      22     450 .. 0.81

  Alignments for each domain:
  == domain 1    score: 125.6 bits;  conditional E-value: 1.5e-39
   TIGR01039  23 pkiydalkvkle..keseelvlevaqhlGddlvraialdstdGl.vrglevkdtgkpievpvGkevlGrilnvlGepidekgevkkkeklsihrkapsfeeqstkveiletGikvidllapyakGGkiglfGGaGvGktvliqelinn......iak.......ehsGlsvfaGvGertreGndlylelkesgvldkvalvyGqmneppGarlrvaltgltlaeyfrdeegqdvllfidnifrftqaGsevsallGrlpsavGyqptlatemGelqerit..stkkgsitsvqavyvpaddltdpapattfahldattvlsrkiaelGiypavdpldstsrlldpev....vGeehyevarevqeilqrykelqdiiailGldelseedklvverarkie 400
                 p+  + ++++l+  +e++  vlev+   G + v  + ++ t G+  +g++v+ tg+ +  pv +++lGri+n  G+pid+  +v ++e l i  ++ + + ++  +e+++tGi  id +   a+G ki lf  aG+    +  ++ ++       +k       e s   vfa +G        + ++++e g l++v+l     n+p   r+     +lt aey+  e+++ vl+   ++  ++ a  evsa    +p   Gy   + t++ ++ er      ++gsit    + +p dd+t p p  t    ++++ ++r++ +  iyp ++ l s srl+++++      ++h +v++++       k++  + a++G + ls+ed+l +e   k e
  MMETSP1137-20121227|4619_1  41 PQFAEIVNLTLQdgTERTGQVLEVQ---GSKAVVQV-FEGTAGVdNKGTSVEFTGSIMTTPVSEDMLGRIFNGSGKPIDKGPAVLAEEFLDIQGQPINPQVRTYPEEMIQTGISTIDCMNSVARGQKIPLFSAAGLPHNEIAAQICRQaglvkqNTKattsddsEESFAIVFAAMGVNMETARFFKQDFEENGALERVTLFLNLANDPTIERIITPRIALTTAEYLAYEKDKHVLVIATDMSSYADALREVSAAREEVPGRRGYPGYMYTDLATIYERAGrvEGRSGSITQFPILTMPNDDITHPIPDLTGYITEGQIYVDRQLYNRQIYPPINVLPSLSRLMKSAIgegmTRRDHGDVSNQLYANYAIGKDVMAMKAVVGEEALSQEDHLYLEFLDKFE 436
                 4444444443330033344555655...67777665.566667636899**********************************************9999999999******************************98876655544331110003221111111223345999999988777777789******************************************************************************************86225689**********************999999***************************9998752221446788888888888888889999999************9988776665 PP

>> TIGR03305  alt_F1F0_F1_bet: alternate F1F0 ATPase, F1 subunit beta
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  114.3   0.1   3.8e-36   1.2e-33      50     394 ..      72     436 ..      24     453 .. 0.82

  Alignments for each domain:
  == domain 1    score: 114.3 bits;  conditional E-value: 3.8e-36
   TIGR03305  50 ialtategl.argmavkdsgaplkapvgkeilsrvfdvfgntidrreslkdvkwrsvhqappaltrrssksevfetgikaidvlvplerggkaglfggagvgktvlltelihn..lvsqeegvs...........lfcgigercregeelyremkeagvldntvmvfgqmneppgarfrvglaaltmaeyfrddekkdvlllidnifrfiqagsevsgllgqlpsrlgyqptlgtelaeleeriatt..edaaitsiqavyvpaddftdpaavhtfshlsaslvlsrkraseglypaidplkstsklatpsiv.gerhyklarevrrvlaqyeelkdiiam...lgleelskedrrvvararrle 394
                   +  t g+  +g++v+ +g+ + +pv +++l+r+f+  g++id+  ++   ++  ++ +p + + r+   e+++tgi  id +  + rg k  lf  ag+ +  + +++  +  lv+q+   +           +f  +g     +  + ++++e g l+++ + +   n+p   r+     alt aey+  ++ k+vl++  ++  + +a  evs    ++p r gy   + t+la + er      ++++it    + +p dd+t p    t       + + r+  +  +yp i+ l s s+l++ +i  g    +     +++ a+y+  kd++am   +g e ls+ed   ++   ++e
  MMETSP1137-20121227|4619_1  72 QVFEGTAGVdNKGTSVEFTGSIMTTPVSEDMLGRIFNGSGKPIDKGPAVLAEEFLDIQGQPINPQVRTYPEEMIQTGISTIDCMNSVARGQKIPLFSAAGLPHNEIAAQICRQagLVKQNTKATtsddseesfaiVFAAMGVNMETARFFKQDFEENGALERVTLFLNLANDPTIERIITPRIALTTAEYLAYEKDKHVLVIATDMSSYADALREVSAAREEVPGRRGYPGYMYTDLATIYERAGRVegRSGSITQFPILTMPNDDITHPIPDLTGYITEGQIYVDRQLYNRQIYPPINVLPSLSRLMKSAIGeGMTRRDHGDVSNQLYANYAIGKDVMAMkavVGEEALSQEDHLYLEFLDKFE 436
                 345556666368****************************************************************************************9998887777653225555322111111122233379999*99988888889*************99****************************************************************************976511689********************999999999***************************9887423444455555578899*******9998555788*******98776666655 PP

>> TIGR01042  V-ATPase_V1_A: V-type ATPase, A subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.2   0.2   9.5e-10     3e-07       2      92 ..      22     116 ..      21     127 .. 0.89
   2 !   77.9   0.0   4.2e-25   1.3e-22     284     512 ..     226     449 ..     213     466 .. 0.89

  Alignments for each domain:
  == domain 1    score: 27.2 bits;  conditional E-value: 9.5e-10
   TIGR01042   2 ygsvkkvsgpvvvaeemagaamyelvrvghe...elvgeiirlegdkatiqvyeetaglt.vgdpvlrtgkplsvelgpgilgnifdgiqrplka 92 
                 y +v +v gp+v+ +++      e+v++  +   e  g+++ ++g ka +qv+e tag+   g +v  tg+ ++  +   +lg if+g  +p+++
  MMETSP1137-20121227|4619_1  22 YRTVIGVNGPLVILDNVRNPQFAEIVNLTLQdgtERTGQVLEVQGSKAVVQVFEGTAGVDnKGTSVEFTGSIMTTPVSEDMLGRIFNGSGKPIDK 116
                 77899********************998765222689**********************626889************************999875 PP

  == domain 2    score: 77.9 bits;  conditional E-value: 4.2e-25
   TIGR01042 284 reesimkrttlvantsnmpvaareasiytgitlaeyfr.dmgynvsmladstsrwaealreisgrlaempadsgypaylgarlasfyeragrvkclgsperegsvsivgavsppggdfsdpvtsatlgivqvfwgldkklaqrkhfpsvnwlisyskylka.leefyekeypefvelrtkvkeilqeeeeleeivqlvgkdalaesdkitlevaklikedflqqngytkyd 512
                 +e+  + r tl  n +n p   r  +    +t aey+  ++ ++v ++a   s +a+alre+s    e+p   gyp y+ + la++yeragrv+      r+gs++    ++ p  d++ p+   t  i++    +d++l +r+ +p +n+l s s+ +k+ + e   +   +  ++ +++    +  +++  +  +vg +al+++d++ le  + +   f++q +y +  
  MMETSP1137-20121227|4619_1 226 EENGALERVTLFLNLANDPTIERIITPRIALTTAEYLAyEKDKHVLVIATDMSSYADALREVSAAREEVPGRRGYPGYMYTDLATIYERAGRVE-----GRSGSITQFPILTMPNDDITHPIPDLTGYITEGQIYVDRQLYNRQIYPPINVLPSLSRLMKSaIGEGMTR--RDHGDVSNQLYANYAIGKDVMAMKAVVGEEALSQEDHLYLEFLDKFEGKFVNQGAYENRT 449
                 5677899*****************************9637899**************************************************7.....59*****************************99999**********************997515554444..5566777777777778889999999******************************98755 PP

>> TIGR03324  alt_F1F0_F1_al: alternate F1F0 ATPase, F1 subunit alpha
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.4   0.3   1.4e-31   4.3e-29      59     367 ..      57     379 ..      20     409 .. 0.82

  Alignments for each domain:
  == domain 1    score: 99.4 bits;  conditional E-value: 1.4e-31
   TIGR03324  59 llGiafnvdedevGvvllgeyskl.qaGdevertgrvldvpvGdellGrvvdplGrpldgkkelasskrlpierpapeimdrapvtvplqtGlkvvdalipiGrGqrelilGd.............rqtGktaiaidtil.nqkdknvlcvycaiGqrasavakvvaelrekgaldytivvvtegndppGlqyiapyaatsiaeyf.meqGrdvlivyddltkharayrelslllrrppGreafpGdifyvhsrllersthlrkerGGGsltalpiieteaqnisayiptnlisitdGqiylspelfelGvlpavdvGksvsrvG 367
                   G  ++v+ ++  v +++  + + + G  ve tg+++ +pv +++lGr+ +  G+p+d +  +  ++ l i+ +  +   r+   + +qtG+  +d +  + rGq+  ++               rq+G      ++   +  ++    v+ a+G +  +     +++ e+gal+  +  +   ndp+  + i+p  a + aey+  e+ + vl++  d++++a a re+s      pGr  +pG ++   + + er+  ++     Gs+t +pi+   + +i+  ip     it+Gqiy+  +l+++ + p ++v  s+sr+ 
  MMETSP1137-20121227|4619_1  57 RTGQVLEVQGSKAVVQVFEGTAGVdNKGTSVEFTGSIMTTPVSEDMLGRIFNGSGKPIDKGPAVLAEEFLDIQGQPINPQVRTYPEEMIQTGISTIDCMNSVARGQKIPLFSAaglphneiaaqicRQAGLVKQNTKATTsDDSEESFAIVFAAMGVNMETARFFKQDFEENGALERVTLFLNLANDPTIERIITPRIALTTAEYLaYEKDKHVLVIATDMSSYADALREVSAAREEVPGRRGYPGYMYTDLATIYERAGRVEGR--SGSITQFPILTMPNDDITHPIPDLTGYITEGQIYVDRQLYNRQIYPPINVLPSLSRLM 379
                 56677777766655555555554426799*******************************************9877777778888999******************987765411111122222235555444444333303445566789999999988766677889************************************845899*************************************9999*******988654..68*********************999*****************************974 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (485 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       122  (0.0297416); expected 82.0 (0.02)
Passed bias filter:                      112  (0.0273038); expected 82.0 (0.02)
Passed Vit filter:                        18  (0.0043881); expected 4.1 (0.001)
Passed Fwd filter:                        13  (0.00316919); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.68u 0.20s 00:00:00.88 Elapsed: 00:00:00.77
# Mc/sec: 831.36
//
Query:       MMETSP1137-20121227|4620_1  [L=848]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      5e-81  271.1   0.0    2.7e-45  152.9   0.0    3.5  3  TIGR00593 pola: DNA polymerase I


Domain annotation for each model (and alignments):
>> TIGR00593  pola: DNA polymerase I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   0.0   3.6e-09   1.5e-05     334     554 ..      62     346 ..      22     369 .. 0.72
   2 !   92.1   0.0   1.6e-30   6.4e-27     596     712 ..     527     641 ..     519     644 .. 0.94
   3 !  152.9   0.0   6.6e-49   2.7e-45     710     890 .]     663     848 .]     660     848 .] 0.93

  Alignments for each domain:
  == domain 1    score: 21.4 bits;  conditional E-value: 3.6e-09
   TIGR00593 334 klkkakalaialeeasevakvseadgl......................................leteekdaklaevleketikkaleadakalaklLkakgielllvvedtmlaaylldpeets.kelatlakkylkeelald...................eekl..kkeaklaekdkeealeelaakaaalarlaeelekele......eeelkslleeielPlskvLaeMEktGikvd.kdylqelskelaeelakleeeiyelaGe.efnlnSpkQLeevLFe 554
                    ++ a+a+  ++++  + +++++                                        ++ +e  +++ e+l++e+  k+  +++ +++++L ++g+++ +   dtm +a l d+++ + ++l++l+ +   ++ ++                       l   +e ++   ++ e++++++ +a+ ++ l++el k+le       +++ + ++e  +P+ + L+++E +G++v+ +  lq + +  + ela    ++   a    +n++S  Q++ +LF 
  MMETSP1137-20121227|4620_1  62 VRDAKAAVAVLKQHND-LMHACDTEVAgldlkrspigqgqvicisiysgpdidfghgkgqalwidTTRSEVMDEFREWLNDENALKVW-HNYGFDRHVLWNHGVDVRGFGADTMHMARLWDASRMNgYSLEQLTDELVGRRKIPMkeifgvpskkkdgtagrtiV--LppVDELQTSPMTRGEWIKYSVYDAQGTWLLYQELRKKLEetdweeGHNMYDFYTEYWRPFGELLTDIERAGVHVEpSAQLQAMADRDQAELAFRRWAASFCADAwYMNVGSASQVQALLFG 346
                 4444444454444422.22333332224566677777777777777777777778888888777767777788999999999999988.******************************9988765256777777766555544445666766654443332111..1112333444567789************************888876667888999********************94568****999999998777666555555157*************7 PP

  == domain 2    score: 92.1 bits;  conditional E-value: 1.6e-30
   TIGR00593 596 tklksTYvdellelvnkdtgriHTtFvQtgtaTGRLsSsnPNLQNiPirseegrkIRkaFvaekgwllisaDYsQIELrvLAHlsqdenLieaFkegeDiHtetAaklfgveeedvt 712
                 + + sT++ +l e   +   riH + +   t TGRLs + PNLQN P  +++  ++R+aF a ++ +l+ aDY Q+ELr+LAH+ + + +i+aF++g   H++tA+ +f+  +e+v+
  MMETSP1137-20121227|4620_1 527 ETMLSTFIMPLQEFASPG-SRIHCSLN-LNTETGRLSARAPNLQNQPALEKDKYRVRDAFTAVDKCTLVVADYGQLELRLLAHMTKCKSMIDAFEKGGCFHSRTAMGMFQHVREAVD 641
                 567899999999888888.9*****87.78********************************************************************************9888887 PP

  == domain 3    score: 152.9 bits;  conditional E-value: 6.6e-49
   TIGR00593 710 dvtpeeRriaKtvnFGvvYGisafrLakelkisrkeAkefierYFerypgvkeyleqvveearkkgyvetllgRrryikdiksrnrkereaaeRaAlNapiQgsaADiiKiAMikldkalkerklkarlLLQvHDELlleapeeeaeevkelvkevmeeavelkvP.....LevevetgknWkeak 890
                 dv   eRr+aKt+nF + YG   ++Lak+ ++s +eAk+ ++++++  p+v ++ e++++ ark+gy+ tl+gRrr +  i   + + r+  eRaA+N+piQg aADi+ +AM+kl+k+ k ++l   l+LQvHD ++le pee  ee  + v + m e  + ++P     L+v+++ +++W eak
  MMETSP1137-20121227|4620_1 663 DVFGSERRKAKTLNFSIAYGKTPHGLAKDWGVSIAEAKAMLQAWYADRPEVLAWQEKTKADARKTGYTRTLMGRRRPLVGIATGKMNMRSHLERAAINTPIQGGAADIMTLAMLKLKKSEKLKELGYTLILQVHDXVMLEGPEESGEEAMKEVVACMREPFDKHLPsllveLAVDAKCARTWFEAK 848
                 677889*****************************************************************************************************************9999999******************9999999999999766654444333339***********987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (848 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       128  (0.0312043); expected 82.0 (0.02)
Passed bias filter:                      107  (0.0260848); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.60u 0.18s 00:00:00.78 Elapsed: 00:00:00.81
# Mc/sec: 1381.81
//
Query:       MMETSP1137-20121227|4621_1  [L=581]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (581 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       123  (0.0299854); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.14s 00:00:00.52 Elapsed: 00:00:00.68
# Mc/sec: 1127.73
//
Query:       MMETSP1137-20121227|4622_1  [L=176]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (176 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.15s 00:00:00.32 Elapsed: 00:00:00.38
# Mc/sec: 611.32
//
Query:       MMETSP1137-20121227|4623_1  [L=574]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   5.4e-158  524.8   0.0   1.4e-156  520.2   0.0    2.0  1  TIGR00355 purH: phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase


Domain annotation for each model (and alignments):
>> TIGR00355  purH: phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  520.2   0.0  3.4e-160  1.4e-156      13     511 .]       1     574 []       1     574 [] 0.96

  Alignments for each domain:
  == domain 1    score: 520.2 bits;  conditional E-value: 3.4e-160
   TIGR00355  13 lvelakeLvekgvellssGGtakllkeaglpvievsditgaPeildGrvktLhPkvhGGiLarrgdddeadleehdiekiDlvvvnLyPfketvakegvtleeaveeiDiGGptllraaaknhkdvtilvdpkdysailkeldeegeislelrkelalkafehtaayDaliadyfsklvsekeprqlnlsfvkkqalryGenphqk.aafyveekekeasvakaeqlqGkelsynnllDadaaleivkefd....ePaavivkhvnPcGvavgktlld..................aydrafeaDktsafGgiialnrelDketakaivkefleviiaPsveaealeilakkknlrllilqesaerv.pekdlkrvaGglLvqdrdleivdqselk.vvsk.kqpteqelkdlllawkvvkfvksnaivyaknnmtvGvGaGqmsrvysakiagekad.............................................................deGveakgsslasDaffpfrdsveeaakagvtsviqPggsirdeesikaadelgialvftglrhfkh 511
                 lv++a++L+++gv lls+GGtak ++eag+pv++vs++t+ Pei+dGrvktLhP+vhGGiL r ++ d+++l + + ++iDlvvvnLyPf +tvak g  +++ +e+iDiGGpt++raaaknh++vt++v+p+dy a+l+ +   g    ++r +lalkaf hta yD++ia++++             + ++ q+l+yG np qk a++     ++ +    + +l G +++y+nllDa +a+++v+e+      Paa+++khv+P+G+av  ++ d                  ay r+++aD+  +fG+++a+++ +D++ta+ +  e++++iiaP++e+ aleil +kk++++++l+ + +   pe++l++v G+ + q r le vd ++l+ vv+  k+++ ++ +dll+a +++k+++sn++ yak++++vGvGaGq+srv ++k+ag+k d                                                             d     ++ slasDaffpfrds++ a   gv+ v+  ggs+ dee+i aa+e+g+++ f glr f+h
  MMETSP1137-20121227|4623_1   1 LVDFAQGLSQHGVTLLSTGGTAKAIREAGIPVTDVSEYTESPEIMDGRVKTLHPRVHGGILMRGTEADQQQLLAIGGQPIDLVVVNLYPFSATVAK-GAPFADCIENIDIGGPTMVRAAAKNHARVTVIVQPSDYAAVLASMP--GGPDDAMRAQLALKAFSHTATYDTAIAEWMQGELC--------TGRTAVQTLKYGCNPQQKpASIRGLLSPSGPQPLPFAVLSG-TPGYINLLDALNAWQLVRELGqatgLPAAASFKHVSPAGAAVYAPIDDdllsvyeatgkelskvavAYLRSRQADPLCSFGDFVAVSEVVDASTAALLKIEVSDGIIAPGYEPAALEILRAKKGGKYIVLEADVAFEpPEEELRTVFGASFRQRRALEPVDGKTLEnVVTGkKELSAEAKRDLLVAQIAIKYTQSNSVGYAKDGQMVGVGAGQQSRVDCVKLAGRKVDtwylrqhpkvralqfkagvkrqerinarvryiegdmpptefsqwkeqfeavpeplsadekrDFLATLTDVSLASDAFFPFRDSLDVASSRGVKFVVAAGGSVADEEVIGAANEYGMTMAFSGLRLFHH 574
                 79****************************************************************9****************************8.889****************************************997..5556789**********************987655........678889************88888888999999999******.********************989999********************************************************************************************************998776615677***********************99777549***************************************************************************************************************9887666677899*********************************************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (574 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       101  (0.0246221); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.17s 00:00:00.63 Elapsed: 00:00:00.49
# Mc/sec: 1546.16
//
Query:       MMETSP1137-20121227|4624_1  [L=286]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (286 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       141  (0.0343735); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.16s 00:00:00.41 Elapsed: 00:00:00.35
# Mc/sec: 1078.54
//
Query:       MMETSP1137-20121227|4625_1  [L=89]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (89 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        76  (0.0185275); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.17s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 405.07
//
Query:       MMETSP1137-20121227|4627_1  [L=214]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.02   12.9   0.0      0.037   12.0   0.0    1.5  1  TIGR00229 sensory_box: PAS domain S-box protein


Domain annotation for each model (and alignments):
>> TIGR00229  sensory_box: PAS domain S-box protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   8.9e-06     0.037      10     109 ..      73     176 ..      66     179 .. 0.68

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 8.9e-06
   TIGR00229  10 ilesspdaiivvdeeGnilyvNrafeeifGYsaeeliGrnvle..lipeedre..evrerierrlegerepvseerrvkrkdGseiwvevsvspird.aggelgv 109
                 ++e  + ai++   +++il vNr+++e+  Y+a e +++++ +      +  e  + ++r+ ++  g   ++    ++ +k G  +   ++++ i+d + g +++
  MMETSP1137-20121227|4627_1  73 LAEAEHPAIVTGGVDNKILGVNRSWCELCDYQASECLDKSPKIlqGCGTDFYEakKFAQRLANKSGGDGDVCAALLNY-TKAGVPFLHILRGRAIYDpSTGSKYY 176
                 56666678999999*************************988732233333330033444444444566666666666.77777777777777777766666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (214 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        81  (0.0197465); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.20u 0.17s 00:00:00.37 Elapsed: 00:00:00.32
# Mc/sec: 882.68
//
Query:       MMETSP1137-20121227|4628_1  [L=193]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (193 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        66  (0.0160897); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.15s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 878.41
//
Query:       MMETSP1137-20121227|4629_1  [L=285]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (285 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        87  (0.0212092); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.16s 00:00:00.40 Elapsed: 00:00:00.36
# Mc/sec: 1044.91
//
Query:       MMETSP1137-20121227|4630_1  [L=545]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (545 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        61  (0.0148708); expected 82.0 (0.02)
Passed bias filter:                       44  (0.0107265); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.15s 00:00:00.48 Elapsed: 00:00:00.45
# Mc/sec: 1598.53
//
Query:       MMETSP1137-20121227|4631_1  [L=978]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.8e-05   21.6   0.3    3.3e-05   20.8   0.2    1.3  1  TIGR02037 degP_htrA_DO: peptidase Do
     0.0064   13.1   0.0        1.1    5.7   0.0    2.6  2  TIGR03279 cyano_FeS_chp: putative FeS-containing Cyanobacterial-specific oxidoreductase
  ------ inclusion threshold ------
       0.08    8.4   7.0       0.29    6.5   5.2    1.6  2  TIGR02169 SMC_prok_A: chromosome segregation protein SMC


Domain annotation for each model (and alignments):
>> TIGR02037  degP_htrA_DO: peptidase Do
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   0.2   2.4e-08   3.3e-05     256     308 ..     787     839 ..     772     848 .. 0.91

  Alignments for each domain:
  == domain 1    score: 20.8 bits;  conditional E-value: 2.4e-08
   TIGR02037 256 ekakGalvaevlkgspAekaGlkaGDvilkvngkkiksaadlreaigtlkpgk 308
                 ++  G+ + +v++gs+A+ a + +GDv+++vng   +sa++ ++ i+++++g+
  MMETSP1137-20121227|4631_1 787 NADAGVEIEAVTPGSAADAAAVSVGDVLISVNGSLCRSATQASKLIAAAPMGT 839
                 5668999*****************************************99997 PP

>> TIGR03279  cyano_FeS_chp: putative FeS-containing Cyanobacterial-specific oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.7   0.0   0.00082       1.1     224     292 ..     614     681 ..     609     706 .. 0.83
   2 !    4.5   0.0    0.0019       2.6       2      34 ..     794     826 ..     793     840 .. 0.86

  Alignments for each domain:
  == domain 1    score: 5.7 bits;  conditional E-value: 0.00082
   TIGR03279 224 ltrfrpeedeltpvteekakkviaqvealqkefqrklgsrfawladewyliageklpsraayedypqle 292
                  +++r + del+ +++++ +kvi+   al+  +++      +   d+w l++++   +raa e++ ql+
  MMETSP1137-20121227|4631_1 614 EAKLRQNMDELRKLGDKCDAKVISVEAALH-SLNALDADAASKHGDKWLLVSASAAAKRAAMEELAQLK 681
                 578999*****************8666665.55554445556789********************9986 PP

  == domain 2    score: 4.5 bits;  conditional E-value: 0.0019
   TIGR03279   2 vsavkpgsiaeelGfepGdalvsinGvkprdli 34 
                 ++av+pgs a+      Gd l+s+nG+  r   
  MMETSP1137-20121227|4631_1 794 IEAVTPGSAADAAAVSVGDVLISVNGSLCRSAT 826
                 789***********************9888765 PP

>> TIGR02169  SMC_prok_A: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0      0.22     3e+02     652     715 ..     491     555 ..     488     563 .. 0.60
   2 ?    6.5   5.2   0.00021      0.29     670     814 ..     607     754 ..     600     777 .. 0.84

  Alignments for each domain:
  == domain 1    score: -3.5 bits;  conditional E-value: 0.22
   TIGR02169 652 kSGaitGGsraersgelvsasekeklerlrerleeLereleslqselrriekrl.delssklsda 715
                  SG ++GG+ a    + +s + +     ++    + +++le+  +e rr+ +++ ++l +++ d 
  MMETSP1137-20121227|4631_1 491 ISGRVVGGALAPPELTENSSHTRSADPFVHLVPASVQQDLERFVDEARRRTEKIfHKLDQAVADG 555
                 57778888877777666666666666667777777777777777666555444404444555544 PP

  == domain 2    score: 6.5 bits;  conditional E-value: 0.00021
   TIGR02169 670 sasekeklerlrerleeLereleslqselrriekrldelssklsdaekkieeiekeleqleeeeeklkerleeleeklseleeeleekkeelkeleaeieeleeklaklkeal...edleaelseekieeieeelekleeevsriear 814
                 + ++   +++lr++++eL +  +++ +++ ++e +l++l++   da  k++++   +++ ++ ++++ e+l++l++kl+e     ee  ++ ++ +  ++ l  +  ++++++    +  a  s+e + +++++l++le++++  ea 
  MMETSP1137-20121227|4631_1 607 QIHKAGGEAKLRQNMDELRKLGDKCDAKVISVEAALHSLNALDADAASKHGDKWLLVSASAAAKRAAMEELAQLKRKLEEAAGGNEELARRHEAKADALAILALSPDEIQAQVpagSSSRALASHESVTTLQSKLQALEAHHATREAL 754
                 555566678899*********************************************************************9999999999999999999999999999988832234556678999***********9999887764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (978 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       196  (0.0477816); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.64u 0.12s 00:00:00.76 Elapsed: 00:00:00.75
# Mc/sec: 1721.14
//
Query:       MMETSP1137-20121227|4632_1  [L=64]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       201  (0.0490005); expected 82.0 (0.02)
Passed bias filter:                      190  (0.0463189); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.28
# Mc/sec: 301.69
//
Query:       MMETSP1137-20121227|4633_1  [L=301]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (301 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       244  (0.0594832); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.17s 00:00:00.43 Elapsed: 00:00:00.39
# Mc/sec: 1018.69
//
Query:       MMETSP1137-20121227|4634_1  [L=422]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (422 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        92  (0.0224281); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.15s 00:00:00.46 Elapsed: 00:00:00.44
# Mc/sec: 1265.90
//
Query:       MMETSP1137-20121227|4635_1  [L=237]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0078   12.2   4.9     0.0085   12.1   3.4    1.0  1  TIGR00844 c_cpa1: sodium/hydrogen antiporter


Domain annotation for each model (and alignments):
>> TIGR00844  c_cpa1: sodium/hydrogen antiporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.1   3.4   2.1e-06    0.0085     512     639 ..      46     176 ..      15     218 .. 0.72

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 2.1e-06
   TIGR00844 512 rrqklrdkkeieddielndlgrerlqkekearaatidlstavteqlgeeigragdleerekvnikerseavntiysldklaedtenkdvtrvetsrvdg...i.eseiddvdeyesdsesiaslerrrikkl 639
                 +  +l+++k +  ++  n+lg + l+ke+ +ra + + ++   e+ +e+  r++ ++  e+  ++e+ e+    y+ d  +++++ +   + +  r  +   i ++e dd d           +e+ r++ l
  MMETSP1137-20121227|4635_1  46 KDARLKNHKAVVAEDRRNKLGPDALKKERAERAYAKAKEDGHVETEEEKLLRTTAEQAGEHSYKMEKKEKRRGEYGWDVFNNEAQYRHYKK-QLRRSGDvgrIgNAEADDADPDPLAYGEARPVEQARVQAL 176
                 55689999************************************************************************99998876433.2222222112212233333332222233444555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (237 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       147  (0.0358362); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.26u 0.17s 00:00:00.43 Elapsed: 00:00:00.46
# Mc/sec: 680.03
//
Query:       MMETSP1137-20121227|4637_1  [L=253]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-17   61.8   1.5      2e-17   61.4   1.0    1.2  1  TIGR01079 rplX_bact: ribosomal protein L24
  ------ inclusion threshold ------
      0.022   13.0   1.2       0.04   12.1   0.5    1.5  1  TIGR01080 rplX_A_E: ribosomal protein L24


Domain annotation for each model (and alignments):
>> TIGR01079  rplX_bact: ribosomal protein L24
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.4   1.0   9.8e-21     2e-17       6     104 .]     117     215 ..     112     215 .. 0.96

  Alignments for each domain:
  == domain 1    score: 61.4 bits;  conditional E-value: 9.8e-21
   TIGR01079   6 kgDtVlvisGkdkGkkGkvlkvlpkkdkviVegvnlvkkhvkpkeekekeggiiekEapidisnvalvdkktkkatrvgirieedkkkvRvlkksgeii 104
                   D+V+v sG     +Gkv kvl+k++k iVegvn+  k+v + + ++  ++ ++kE p++ s+  lvd+ ++k+tr++  + ed+ kvRv ++sg +i
  MMETSP1137-20121227|4637_1 117 SRDHVVVHSGPYMIGEGKVKKVLRKENKLIVEGVNIKEKAVPDMQGSRLVAKYVRKEEPVHYSQCNLVDPVDGKRTRIRRGYLEDGTKVRVSRRSGAVI 215
                 679**************************************999999999*********************************************9876 PP

>> TIGR01080  rplX_A_E: ribosomal protein L24
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.5     2e-05      0.04      41      81 ..     114     154 ..      88     163 .. 0.83

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 2e-05
   TIGR01080  41 pvrkgdkvrilrGdfkGkeGkvlkvdlkryriyvegvtkek 81 
                  +   d+v +  G +   eGkv kv +k  ++ vegv+++ 
  MMETSP1137-20121227|4637_1 114 CIYSRDHVVVHSGPYMIGEGKVKKVLRKENKLIVEGVNIKE 154
                 456689*******************************9875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (253 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       104  (0.0253535); expected 82.0 (0.02)
Passed bias filter:                       96  (0.0234032); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.23u 0.16s 00:00:00.39 Elapsed: 00:00:00.27
# Mc/sec: 1236.79
//
Query:       MMETSP1137-20121227|4638_1  [L=88]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (88 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        85  (0.0207216); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.16s 00:00:00.31 Elapsed: 00:00:00.28
# Mc/sec: 414.82
//
Query:       MMETSP1137-20121227|4639_1  [L=101]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       259  (0.0631399); expected 82.0 (0.02)
Passed bias filter:                      189  (0.0460751); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.13s 00:00:00.30 Elapsed: 00:00:00.33
# Mc/sec: 403.97
//
Query:       MMETSP1137-20121227|4640_1  [L=287]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (287 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       142  (0.0346173); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.17s 00:00:00.40 Elapsed: 00:00:00.34
# Mc/sec: 1114.14
//
Query:       MMETSP1137-20121227|4641_1  [L=172]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (172 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        79  (0.0192589); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.16s 00:00:00.35 Elapsed: 00:00:00.28
# Mc/sec: 782.83
//
Query:       MMETSP1137-20121227|4642_1  [L=430]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.44    8.6   4.8      0.054   11.6   0.4    1.5  2  TIGR02985 Sig70_bacteroi1: RNA polymerase sigma-70 factor, Bacteroides expansion family 1


Domain annotation for each model (and alignments):
>> TIGR02985  Sig70_bacteroi1: RNA polymerase sigma-70 factor, Bacteroides expansion family 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.4   1.3e-05     0.054      43     119 ..     133     215 ..     121     228 .. 0.84
   2 ?   -3.4   0.2      0.51   2.1e+03      69      98 ..     294     322 ..     284     333 .. 0.45

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 1.3e-05
   TIGR02985  43 resleesesikayLltivknrclnylrhkeveekykeelsekeedeiel......eeeeeeeleskeleeiieeaiekLPeqc 119
                 +++++ese ++a+L ++v  ++ ++  hk veek+++e + + ++++++       +++ ++  +     +i++a+++LP+q+
  MMETSP1137-20121227|4642_1 133 QQQVNESEALSAFLTSSVFTQARQRNDHKAVEEKTMKEDRHQGSSSHSAasglrqRKHPRKRAREVTYCDMISSALQQLPSQQ 215
                 567899***************************9996665555555555599986666666666688889**********997 PP

  == domain 2    score: -3.4 bits;  conditional E-value: 0.51
   TIGR02985  69 rhkeveekykeelsekeedeieleeeeeee 98 
                  ++ ++e++++e ++++ +++++ ++  e+
  MMETSP1137-20121227|4642_1 294 TREAIREAARSEARNSARADSRA-DSRXER 322
                 33444444444444444444443.444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (430 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       147  (0.0358362); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.32u 0.16s 00:00:00.48 Elapsed: 00:00:00.44
# Mc/sec: 1289.89
//
Query:       MMETSP1137-20121227|4643_1  [L=491]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (491 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        90  (0.0219405); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.14s 00:00:00.49 Elapsed: 00:00:00.49
# Mc/sec: 1322.58
//
Query:       MMETSP1137-20121227|4644_1  [L=412]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (412 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       107  (0.0260848); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.14s 00:00:00.44 Elapsed: 00:00:00.47
# Mc/sec: 1157.01
//
Query:       MMETSP1137-20121227|4646_1  [L=67]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (67 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        21  (0.00511945); expected 82.0 (0.02)
Passed bias filter:                       18  (0.0043881); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.15s 00:00:00.26 Elapsed: 00:00:00.26
# Mc/sec: 340.13
//
Query:       MMETSP1137-20121227|4647_1  [L=709]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (709 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        65  (0.0158459); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.14s 00:00:00.56 Elapsed: 00:00:00.56
# Mc/sec: 1671.08
//
Query:       MMETSP1137-20121227|4648_1  [L=59]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (59 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       156  (0.0380302); expected 82.0 (0.02)
Passed bias filter:                      138  (0.0336421); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.33
# Mc/sec: 235.98
//
Query:       MMETSP1137-20121227|4649_1  [L=110]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (110 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       101  (0.0246221); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.18s 00:00:00.34 Elapsed: 00:00:00.28
# Mc/sec: 500.65
//
Query:       MMETSP1137-20121227|4650_1  [L=199]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (199 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        89  (0.0216967); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.17s 00:00:00.37 Elapsed: 00:00:00.28
# Mc/sec: 905.72
//
Query:       MMETSP1137-20121227|4652_1  [L=168]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (168 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       100  (0.0243784); expected 82.0 (0.02)
Passed bias filter:                       98  (0.0238908); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.18s 00:00:00.37 Elapsed: 00:00:00.34
# Mc/sec: 652.18
//
Query:       MMETSP1137-20121227|4653_1  [L=345]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.7e-07   28.7   0.0    4.4e-07   28.0   0.0    1.3  1  TIGR00320 dfx_rbo: desulfoferrodoxin
    3.3e-06   25.3   0.3    9.2e-06   23.9   0.2    1.8  1  TIGR00332 neela_ferrous: desulfoferrodoxin ferrous iron-binding domain


Domain annotation for each model (and alignments):
>> TIGR00320  dfx_rbo: desulfoferrodoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.0   0.0   2.2e-10   4.4e-07      46     123 ..     260     338 ..     247     340 .. 0.82

  Alignments for each domain:
  == domain 1    score: 28.0 bits;  conditional E-value: 2.2e-10
   TIGR00320  46 kekhvpviektgngvkvkvgsvahpmeekhyiewielia..ddvvyrkdlkpgdapeaeflv..kadkvvareycnihglwk 123
                 + khvp +  +g++v +   sv+h m e+h ie+i   +  + vv   +l   d+p   f++   ++ ++a e cn+h  w 
  MMETSP1137-20121227|4653_1 260 EPKHVPQVTVKGGQVTI---SVPHGMAEDHLIEYIWAKDqnGHVVAAAKLGCTDSPTLTFPLpkGTTSITAYEQCNLHAVWA 338
                 349***99988887766...68***********8876551156889999************9745678889999*******6 PP

>> TIGR00332  neela_ferrous: desulfoferrodoxin ferrous iron-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.9   0.2   4.5e-09   9.2e-06       6     100 ..     259     339 ..     255     345 .] 0.73

  Alignments for each domain:
  == domain 1    score: 23.9 bits;  conditional E-value: 4.5e-09
   TIGR00332   6 kkekhvPvievkdregakvevkvkvgkeiphPmeeehfieWielvagdlvlkkelvvgdaekaeklsvdapsfkveksskltalsyCnihGlWey 100
                 k+ khvP +     +g++v +    +  +ph m e+h ie+i   +++       + g ++  + l+   p+     ++++ta+ +Cn+h +W +
  MMETSP1137-20121227|4653_1 259 KEPKHVPQVT---VKGGQVTI----S--VPHGMAEDHLIEYIWAKDQNGHVVAAAKLGCTDSPT-LTFPLPK----GTTSITAYEQCNLHAVWAS 339
                 5678999888...34554443....4..7************99888777666666666666555.3444444....5789*************76 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (345 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       116  (0.0282789); expected 82.0 (0.02)
Passed bias filter:                       99  (0.0241346); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.28u 0.18s 00:00:00.46 Elapsed: 00:00:00.44
# Mc/sec: 1034.91
//
Query:       MMETSP1137-20121227|4654_1  [L=117]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (117 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        81  (0.0197465); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.15s 00:00:00.31 Elapsed: 00:00:00.28
# Mc/sec: 532.51
//
Query:       MMETSP1137-20121227|4655_1  [L=189]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (189 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        82  (0.0199902); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.17s 00:00:00.36 Elapsed: 00:00:00.44
# Mc/sec: 566.95
//
Query:       MMETSP1137-20121227|4656_1  [L=124]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (124 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.15s 00:00:00.32 Elapsed: 00:00:00.42
# Mc/sec: 389.68
//
Query:       MMETSP1137-20121227|4658_1  [L=260]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (260 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        88  (0.0214529); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.12s 00:00:00.32 Elapsed: 00:00:00.36
# Mc/sec: 953.25
//
Query:       MMETSP1137-20121227|4659_1  [L=356]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (356 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        62  (0.0151146); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.17s 00:00:00.44 Elapsed: 00:00:00.27
# Mc/sec: 1740.30
//
Query:       MMETSP1137-20121227|4660_1  [L=145]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (145 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       103  (0.0251097); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.14s 00:00:00.30 Elapsed: 00:00:00.28
# Mc/sec: 659.95
//
Query:       MMETSP1137-20121227|4661_1  [L=111]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (111 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        65  (0.0158459); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.14s 00:00:00.28 Elapsed: 00:00:00.25
# Mc/sec: 586.03
//
Query:       MMETSP1137-20121227|4662_1  [L=416]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (416 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       210  (0.0511945); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.16s 00:00:00.49 Elapsed: 00:00:00.33
# Mc/sec: 1663.86
//
Query:       MMETSP1137-20121227|4663_1  [L=421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.8e-07   26.4   0.0    1.1e-06   26.0   0.0    1.1  1  TIGR00601 rad23: UV excision repair protein Rad23
     0.0047   14.0   0.0     0.0072   13.4   0.0    1.2  1  TIGR00446 nop2p: NOL1/NOP2/sun family putative RNA methylase
     0.0096   13.3   0.0      0.016   12.5   0.0    1.3  1  TIGR00438 rrmJ: ribosomal RNA large subunit methyltransferase J
  ------ inclusion threshold ------
       0.03   12.0   0.1      0.049   11.3   0.0    1.3  1  TIGR00080 pimt: protein-L-isoaspartate O-methyltransferase


Domain annotation for each model (and alignments):
>> TIGR00601  rad23: UV excision repair protein Rad23
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.0   0.0   1.1e-09   1.1e-06       1      74 [.      49     116 ..      49     120 .. 0.93

  Alignments for each domain:
  == domain 1    score: 26.0 bits;  conditional E-value: 1.1e-09
   TIGR00601   1 vkltlKtlkqqkfkidlepdetvkelKekiesekgkdayevaqqkLiyaGkiLsDdktvkeykikekdfvvvmv 74 
                 ++l +++l + + ++d +p e+v++lK +++s       + ++q+Li+ Gk L++d+ ++ey+++ +d + +m+
  MMETSP1137-20121227|4663_1  49 MQLQIRSLDGTQRTLDXSPAEKVQALKARLHSA------PAEKQRLIFGGKQLANDRCLAEYNVQSGDTMHLML 116
                 899999**********************99875......66***************************999997 PP

>> TIGR00446  nop2p: NOL1/NOP2/sun family putative RNA methylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.0     7e-06    0.0072      69     146 ..     252     330 ..     235     357 .. 0.79

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 7e-06
   TIGR00446  69 peekervlDlaaaPGgkttqisallkneGaivanevsksRvkvLianinRlGvlnvavinvDgRkfgavvlk...fDriLl 146
                 +e+ ++vl l aa G+   ++s l+  +G + a+e+s+   + Li+  ++   +n++ i  D+R+  ++++    +D i  
  MMETSP1137-20121227|4663_1 252 MEPGSKVLYLGAASGTSVSHVSDLVGETGVVYAVEFSHRSGRDLINVAKKR--TNIIPIIEDARHPAKYRMLvgmVDCIFA 330
                 578899********************************9999998655443..4555566777765544432223666655 PP

>> TIGR00438  rrmJ: ribosomal RNA large subunit methyltransferase J
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.5   0.0   1.6e-05     0.016      30      69 ..     252     291 ..     243     347 .. 0.79

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 1.6e-05
   TIGR00438  30 ikkGklvldlGaaPGGWsqvavekvgekGlviavdlqpvk 69 
                 + +G++vl lGaa G     + + vge G+v av++ +  
  MMETSP1137-20121227|4663_1 252 MEPGSKVLYLGAASGTSVSHVSDLVGETGVVYAVEFSHRS 291
                 579*******************************987655 PP

>> TIGR00080  pimt: protein-L-isoaspartate O-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   4.8e-05     0.049      74     109 ..     251     286 ..     237     309 .. 0.87

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 4.8e-05
   TIGR00080  74 elkagakvLeiGtGsGYqaavlaelvgrdglvvsie 109
                  +++g+kvL +G+ sG     ++ lvg+ g+v ++e
  MMETSP1137-20121227|4663_1 251 WMEPGSKVLYLGAASGTSVSHVSDLVGETGVVYAVE 286
                 4899******************************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (421 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       123  (0.0299854); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.34u 0.16s 00:00:00.50 Elapsed: 00:00:00.36
# Mc/sec: 1543.54
//
Query:       MMETSP1137-20121227|4664_1  [L=595]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (595 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        95  (0.0231594); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.14s 00:00:00.54 Elapsed: 00:00:00.43
# Mc/sec: 1826.36
//
Query:       MMETSP1137-20121227|4665_1  [L=238]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.026   10.6   0.6      0.031   10.4   0.4    1.0  1  TIGR01069 mutS2: MutS2 family protein


Domain annotation for each model (and alignments):
>> TIGR01069  mutS2: MutS2 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.4   7.6e-06     0.031     554     601 ..     132     179 ..     103     198 .. 0.87

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 7.6e-06
   TIGR01069 554 elkererklkkelekeaqealkaakkeveeiirelkekkiekakekka 601
                   ++ +rk+k+e ++++++a+ + k  v+++++ +++k+ +kak+  +
  MMETSP1137-20121227|4665_1 132 GSRSTKRKKKSETQQQMAKAVDEYKVAVADLDKAINRKDANKAKKALD 179
                 567899*********************************999998775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (238 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       284  (0.0692345); expected 82.0 (0.02)
Passed bias filter:                      200  (0.0487567); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.28u 0.18s 00:00:00.46 Elapsed: 00:00:00.36
# Mc/sec: 872.59
//
Query:       MMETSP1137-20121227|4666_1  [L=409]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (409 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        52  (0.0126767); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.16s 00:00:00.44 Elapsed: 00:00:00.43
# Mc/sec: 1255.43
//
Query:       MMETSP1137-20121227|4667_1  [L=166]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (166 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        37  (0.00901999); expected 82.0 (0.02)
Passed bias filter:                       35  (0.00853242); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.17s 00:00:00.34 Elapsed: 00:00:00.28
# Mc/sec: 782.51
//
Query:       MMETSP1137-20121227|4668_1  [L=259]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.045   11.6   1.8      0.077   10.8   1.2    1.4  1  TIGR03741 PRTRC_E: PRTRC system protein E


Domain annotation for each model (and alignments):
>> TIGR03741  PRTRC_E: PRTRC system protein E
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   1.2   1.9e-05     0.077      70     105 ..     118     153 ..      83     154 .. 0.90

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 1.9e-05
   TIGR03741  70 areslaeqvaatravleaaaakeaeaakakkaakkk 105
                   ++la+q++a ra + a+++++a a k++++ak +
  MMETSP1137-20121227|4668_1 118 LEKTLADQAEARRAKNRAVRERKAIAGKKQEEAKPE 153
                 4689***************************99865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (259 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       255  (0.0621648); expected 82.0 (0.02)
Passed bias filter:                      102  (0.0248659); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.24u 0.20s 00:00:00.44 Elapsed: 00:00:00.30
# Mc/sec: 1139.51
//
Query:       MMETSP1137-20121227|4669_1  [L=485]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.044   11.3   0.0       0.07   10.6   0.0    1.2  1  TIGR03598 GTPase_YsxC: ribosome biogenesis GTP-binding protein YsxC
      0.067   10.4   0.0        0.1    9.7   0.0    1.2  1  TIGR03596 GTPase_YlqF: ribosome biogenesis GTP-binding protein YlqF


Domain annotation for each model (and alignments):
>> TIGR03598  GTPase_YsxC: ribosome biogenesis GTP-binding protein YsxC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   3.4e-05      0.07     102     162 ..     334     394 ..     326     409 .. 0.84

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 3.4e-05
   TIGR03598 102 kgvvllvDirhelkelDlellellkeakipvlvvltKaDklkkselkkalkkvkkelkkee 162
                 +g++++vD+rh+l +    l ++l++ ++p+l+ ++KaD +  ++l++ + ++++++  ++
  MMETSP1137-20121227|4669_1 334 HGICFVVDARHPLVHCADGLPAILASLRLPLLICFSKADLVPPEHLDEWKGRLARQFPAHQ 394
                 6899*************************************99999988888877777664 PP

>> TIGR03596  GTPase_YlqF: ribosome biogenesis GTP-binding protein YlqF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.0   5.1e-05       0.1      26      74 ..     337     387 ..     330     398 .. 0.89

  Alignments for each domain:
  == domain 1    score: 9.7 bits;  conditional E-value: 5.1e-05
   TIGR03596  26 ievlDARiplssknpeleelvk..nkprlivlnkaDladpektkkwlkyfe 74 
                   v+DAR pl      l  +++  + p li ++kaDl+ pe+ ++w+  + 
  MMETSP1137-20121227|4669_1 337 CFVVDARHPLVHCADGLPAILAslRLPLLICFSKADLVPPEHLDEWKGRLA 387
                 569****************999666799******************98776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (485 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        88  (0.0214529); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.32u 0.14s 00:00:00.46 Elapsed: 00:00:00.38
# Mc/sec: 1684.60
//
Query:       MMETSP1137-20121227|4670_1  [L=685]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.3e-96  318.8   0.0    1.2e-95  318.4   0.0    1.1  1  TIGR00109 hemH: ferrochelatase


Domain annotation for each model (and alignments):
>> TIGR00109  hemH: ferrochelatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  318.4   0.0     3e-99   1.2e-95       4     321 ..     111     436 ..     109     437 .. 0.94

  Alignments for each domain:
  == domain 1    score: 318.4 bits;  conditional E-value: 3e-99
   TIGR00109   4 kkvgvlllnlGtPdkleeverylkqllaDpevvdisr..aklrkllaklilklrskkikknYeeigggSPllqiteqqaealeklld..eeidakvyialryaePfleeavkellkdeveklvvlslyPqfSssttgssfkelaealkkleslr.lkisviesyydeekyikaladsikeklkkrpepdkavllfSaHglPkkvvde.GDaYpeeveatvkliaeklg...akneyaltyQSrvgpeeWLepyteelleklgekkvdklvvvpigFvadhlEtleeidleyrvvaeeagakkykripalNakpefiealaelvlekl 321
                 +++gvlllnlG+Pd+l++ve +l++l++Dpe+++++   ++ + +la++i+ +r++ ++  Ye+igggSP l+ t +q eale+ l+       k+yi++ry++Pf+eea++++++d +++lvvl+lyPqfS+st       l+ +  +++ lr +k  vi+ +y+ ++y++a+a  i+e+ +++ +p   +++fSaHglP+k+v+e GD+Y+++ eatv+ ++e l     +n+++l+yQS+vgp +WL+pyt+e +++l++ +  ++vvvpi+Fv++h+Etleeid+ey ++a e g+ +++r+pal  ++ fi+ la+ v e+l
  MMETSP1137-20121227|4670_1 111 QRTGVLLLNLGGPDTLDQVEPFLYNLFSDPEIITLPSflKWANGPLAWVIARSRAPSSREGYESIGGGSPQLATTIKQGEALEQALKarGLPGVKTYIGMRYWHPFTEEALADIKRDAIDRLVVLPLYPQFSISTWLEPA-LLEAEYYADQELRqMKNIVIPAWYNRKGYVNAVARLIAERCDRFADPSTPHIFFSAHGLPTKYVEElGDPYQKQTEATVRFVMERLReqgYTNDFTLAYQSKVGPVPWLQPYTDEKIKELAAGGTTQMVVVPISFVSEHIETLEEIDVEYAELAAECGVTQWERVPALGLEQDFIDDLADAVIESL 436
                 689********************************9622345579******************************************8444569*****************************************98654.566667777778889********************************99**************9999*******************988899******************************************************************************************9875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (685 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        88  (0.0214529); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.15s 00:00:00.59 Elapsed: 00:00:00.49
# Mc/sec: 1845.15
//
Query:       MMETSP1137-20121227|4672_1  [L=248]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (248 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       110  (0.0268162); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.17s 00:00:00.39 Elapsed: 00:00:00.32
# Mc/sec: 1022.92
//
Query:       MMETSP1137-20121227|4673_1  [L=254]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (254 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       157  (0.038274); expected 82.0 (0.02)
Passed bias filter:                      105  (0.0255973); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.13s 00:00:00.35 Elapsed: 00:00:00.35
# Mc/sec: 957.86
//
Query:       MMETSP1137-20121227|4674_1  [L=1293]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1293 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       119  (0.0290102); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.83u 0.15s 00:00:00.98 Elapsed: 00:00:00.71
# Mc/sec: 2403.69
//
Query:       MMETSP1137-20121227|4675_1  [L=91]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (91 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        25  (0.00609459); expected 82.0 (0.02)
Passed bias filter:                       24  (0.0058508); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.15s 00:00:00.27 Elapsed: 00:00:00.24
# Mc/sec: 500.46
//
Query:       MMETSP1137-20121227|4676_1  [L=280]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (280 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        56  (0.0136519); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.17s 00:00:00.41 Elapsed: 00:00:00.45
# Mc/sec: 821.27
//
Query:       MMETSP1137-20121227|4677_1  [L=394]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-16   58.3   0.0    1.9e-16   57.8   0.0    1.1  1  TIGR02279 PaaC-3OHAcCoADH: 3-hydroxyacyl-CoA dehydrogenase PaaC
    3.9e-09   33.0   0.0    5.2e-09   32.5   0.0    1.0  1  TIGR02441 fa_ox_alpha_mit: fatty acid oxidation complex, alpha subunit, mitochondrial
    4.6e-06   23.0   0.0    6.1e-06   22.6   0.0    1.1  1  TIGR02440 FadJ: fatty oxidation complex, alpha subunit FadJ
    2.5e-05   20.6   0.0    3.3e-05   20.3   0.0    1.0  1  TIGR02437 FadB: fatty oxidation complex, alpha subunit FadB


Domain annotation for each model (and alignments):
>> TIGR02279  PaaC-3OHAcCoADH: 3-hydroxyacyl-CoA dehydrogenase PaaC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.8   0.0   1.8e-19   1.9e-16      29     157 ..      23     160 ..       6     179 .. 0.85

  Alignments for each domain:
  == domain 1    score: 57.8 bits;  conditional E-value: 1.8e-19
   TIGR02279  29 htvllydiraealaravagiekdlkslvekgkldaaeaeatlkrlvPvaal.ealadaglvieaivenlevkkalfaqleel.....lta.daiiasntsslsitalaaglarPer..vaGlhffnPaPlmalvevvs 157
                   v+lyd+   + +ra++++++ l   v++g l   + e  + r+v v++l eal +a+lv+e++ e+l+vkk lf  + e+     ++a +++++snt slsi a++ ++ +  r   +G+ f+ P   +  ve+  
  MMETSP1137-20121227|4677_1  23 XMVQLYDQTEYTRTRALQTVRAFLYDHVANGYLLKMDVEELIGRIVLVHSLpEALEKAELVVESVYEDLQVKKDLFNAMGEIykqraIPAdQVLLCSNTMSLSIGAITEDVCKEYRgsCIGMRFLHPVWFIDEVELAD 160
                 579***********************************************9567889********************9987722222344256799***************987553389*******99998888765 PP

>> TIGR02441  fa_ox_alpha_mit: fatty acid oxidation complex, alpha subunit, mitochondrial
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.5   0.0   5.1e-12   5.2e-09     361     502 ..      25     175 ..      11     180 .. 0.82

  Alignments for each domain:
  == domain 1    score: 32.5 bits;  conditional E-value: 5.1e-12
   TIGR02441 361 tvlkdateagldrGqqqvakglnkkvkkkkltslerdsilsnltatldy.safkkadvvieavfedlklkhkvlkev......eavvpehciiasntsalpikeiaa..vssrpekviGmhyfspvdkmqlleiittdktskdtlasavav 502
                 + l d te +  r  q v   l ++v +  l +++ ++++ +++      +a++ka++v+e+v+edl++k+ ++  +       a+ ++++++ snt +l i  i+   + +     iGm ++ pv  ++ +e+   d t ++t+++a ++
  MMETSP1137-20121227|4677_1  25 VQLYDQTEYTRTRALQTVRAFLYDHVANGYLLKMDVEELIGRIVLVHSLpEALEKAELVVESVYEDLQVKKDLFNAMgeiykqRAIPADQVLLCSNTMSLSIGAITEdvCKEYRGSCIGMRFLHPVWFIDEVELADCDYTRRHTSSNAEEL 175
                 55889999999***************************99988765544289******************988765521132245556788899***********862134455789***************************9998665 PP

>> TIGR02440  FadJ: fatty oxidation complex, alpha subunit FadJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.6   0.0   5.9e-09   6.1e-06     381     466 ..      76     169 ..      36     179 .. 0.81

  Alignments for each domain:
  == domain 1    score: 22.6 bits;  conditional E-value: 5.9e-09
   TIGR02440 381 gfkevdivveavfedlelkqqmvk...dieret...aehtifasntsslpigqiaaaaer..peqviglhyfspvekmplveviphaktseeti 466
                  ++++++vve+v+edl++k+++ +   +i ++    a++ ++ snt sl ig i++   +      ig+ ++ pv  +  ve+   + t  +t 
  MMETSP1137-20121227|4677_1  76 ALEKAELVVESVYEDLQVKKDLFNamgEIYKQRaipADQVLLCSNTMSLSIGAITEDVCKeyRGSCIGMRFLHPVWFIDEVELADCDYTRRHTS 169
                 57899***************986522266555323379999*************987655115689*********9999999988777766665 PP

>> TIGR02437  FadB: fatty oxidation complex, alpha subunit FadB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   0.0   3.2e-08   3.3e-05     352     467 ..      38     162 ..      17     186 .. 0.74

  Alignments for each domain:
  == domain 1    score: 20.3 bits;  conditional E-value: 3.2e-08
   TIGR02437 352 GlteaakllnkqlerGkidglklaevlnsitptley.advdnvdivveavvenpkvkkavlaeveekvr......edavlasntstisisllakalkrpen..fvGmhffnpvhrmplvevirGe 467
                  l+    +l +++++G +  + + e++  i    +    ++++++vve+v e+ +vkk ++  + e  +      ++ +l+snt ++si  +++ + +  +   +Gm f+ pv  +  ve+   +
  MMETSP1137-20121227|4677_1  38 ALQTVRAFLYDHVANGYLLKMDVEELIGRIVLVHSLpEALEKAELVVESVYEDLQVKKDLFNAMGEIYKqraipaDQVLLCSNTMSLSIGAITEDVCKEYRgsCIGMRFLHPVWFIDEVELADCD 162
                 55566667777788887777777777777766555514589*****************98765544443001111445689***********9998775432278*********99999987655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (394 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        86  (0.0209654); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.33u 0.16s 00:00:00.49 Elapsed: 00:00:00.40
# Mc/sec: 1300.09
//
Query:       MMETSP1137-20121227|4678_1  [L=88]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (88 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        47  (0.0114578); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.15s 00:00:00.28 Elapsed: 00:00:00.27
# Mc/sec: 430.19
//
Query:       MMETSP1137-20121227|4679_1  [L=619]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.7e-25   88.0   0.0    1.9e-23   81.3   0.0    2.0  1  TIGR03467 HpnE: squalene-associated FAD-dependent desaturase
    5.9e-15   52.7   0.1    2.2e-08   31.1   0.1    2.9  3  TIGR02731 phytoene_desat: phytoene desaturase
    2.8e-12   44.1   0.0    6.3e-10   36.4   0.0    2.6  2  TIGR02732 zeta_caro_desat: carotene 7,8-desaturase
    8.3e-09   32.5   0.1    5.8e-08   29.8   0.0    2.0  2  TIGR01316 gltA: glutamate synthase (NADPH), homotetrameric
    6.7e-08   29.3   0.0    1.2e-06   25.2   0.0    2.3  3  TIGR00562 proto_IX_ox: protoporphyrinogen oxidase
    7.6e-06   21.4   0.0    0.00014   17.3   0.0    2.1  2  TIGR03315 Se_ygfK: putative selenate reductase, YgfK subunit
    3.3e-05   20.6   1.3      5e-05   20.0   0.9    1.2  1  TIGR02734 crtI_fam: phytoene desaturase
    0.00024   17.4   0.1    0.00037   16.8   0.1    1.2  1  TIGR03997 mycofact_OYE_2: mycofactocin system FadH/OYE family oxidoreductase 2
    0.00029   17.6   0.1    0.00065   16.5   0.1    1.5  1  TIGR01317 GOGAT_sm_gam: glutamate synthase, NADH/NADPH, small subunit
    0.00053   16.5   0.3      0.001   15.5   0.0    1.5  2  TIGR01318 gltD_gamma_fam: glutamate synthase, small subunit
    0.00064   16.5   0.2     0.0017   15.1   0.1    1.6  2  TIGR01988 Ubi-OHases: ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family
    0.00084   15.9   0.1     0.0016   15.0   0.1    1.4  1  TIGR02733 desat_CrtD: C-3',4' desaturase CrtD
      0.005   13.4   0.9     0.0065   13.0   0.2    1.4  2  TIGR01813 flavo_cyto_c: flavocytochrome c
     0.0051   13.7   0.0     0.0084   12.9   0.0    1.2  1  TIGR04046 MSMEG_0569_nitr: flavin-dependent oxidoreductase, MSMEG_0569 family
     0.0058   12.2   0.1     0.0084   11.7   0.0    1.2  1  TIGR01372 soxA: sarcosine oxidase, alpha subunit family
     0.0064   13.1   0.0      0.055   10.0   0.0    2.1  2  TIGR01350 lipoamide_DH: dihydrolipoyl dehydrogenase
     0.0064   13.5   0.0      0.012   12.7   0.0    1.3  1  TIGR03366 HpnZ_proposed: putative phosphonate catabolism associated alcohol dehydrogenase
     0.0091   12.7   0.1      0.014   12.1   0.1    1.2  1  TIGR01984 UbiH: 2-polyprenyl-6-methoxyphenol 4-hydroxylase
     0.0093   13.1   0.1      0.019   12.0   0.0    1.4  1  TIGR00292 TIGR00292: thiazole biosynthesis enzyme
  ------ inclusion threshold ------
       0.02   11.9   0.1      0.074   10.0   0.0    1.8  2  TIGR03169 Nterm_to_SelD: pyridine nucleotide-disulfide oxidoreductase family protein
      0.024   11.5   0.3       0.04   10.8   0.2    1.3  1  TIGR03197 MnmC_Cterm: tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain
      0.056   10.3   1.5      0.084    9.7   1.0    1.2  1  TIGR03364 HpnW_proposed: FAD dependent oxidoreductase TIGR03364
       0.11    9.4   2.0       0.16    8.8   1.0    1.6  2  TIGR02352 thiamin_ThiO: glycine oxidase ThiO


Domain annotation for each model (and alignments):
>> TIGR03467  HpnE: squalene-associated FAD-dependent desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.3   0.0   1.1e-25   1.9e-23       1     429 [.      77     571 ..      77     572 .. 0.86

  Alignments for each domain:
  == domain 1    score: 81.3 bits;  conditional E-value: 1.1e-25
   TIGR03467   1 vvvvGgGlAGLaAAveLaraG.vrvtllEarrqlGGRar.sfedgslgetiDngqHvllgaytellallarvgaedrlqlerleltfldpegres...rLrlsrlpaPlhlakgll.rakglsladklalarlllalkrerl.....raaadetvaewLkakgqserlierlwepllvsaLNedperasaklaakVlrdsllakreasdlllprvdLselfvepaarylesrggevrlgtrvreleas.aggiralveaaeet.....................................laadavvlAvpperaasllpe......edlaaklaalesspIttvhlrldrevk...lpaplvglvggl.aqWlfdrgelagee......gllavvvSaardledlereeladrivaelrrllpkv.aeakllkakvikekrAtFaatpglerlRPgar.tplpnlfLAGDwtatgyPA.TlEgAvrSGvqAAeavl 429
                 vvvvG+G+ GL+ A +L++ G v+vt+++a+++ GG ++  f   s +++   gqH   g y++++all+ +  +d+l+  ++e   + p+g ++   + r ++   P  + ++l  r   l l d +++a l+la+   +      +  +  ++ ++  + g s+rl+++ +ep+++  L ++ e+ sa++a        l+++  +d++++r + +e++ +p ++++++r + +  +trv   e + + +i a+++a+ ++                                     l+ad+vv Av  + +  l+ +      ++   +  +l+  ++++  l ldr+v+    + +  g  +g+ + W fd  +l+  +       +l+v    ++ l +++++++++++ ++l ++l+++  +a++ +a v++    +    pg     P++  t +pn +  GD ++t   +   E A   G +AA+a+l
  MMETSP1137-20121227|4679_1  77 VVVVGAGWGGLSVAHALSKSGnVHVTVVDAAPRPGGLVSdGFLTTSGTRRAEAGQHGFWGEYHNIFALLDELSISDALT-GYAEQGQYSPDGLQAvwpVYREQKQELPTGIGQALYtRFLNLPLTDLATAAPLVLAFSEFDDspeawARYDSISFRDLCVRLGVSKRLYKEAFEPMILTGLFAPGEECSAAAALGMAYFFVLKHQTSFDVRWARGNVGEVIFAPWVEAMKARNVTFMQSTRVVGFEETaDSKIGAKIDAEIDStsaeikstlrptaqqssrlsavlcspagaaasdpptrLEADNVVFAVGAAALSGLVRNspilsrHAELRRFCNLRGTSVLATRLFLDRPVRtpySANACWGFDEGVgMTW-FDIRQLHKPAhdhepgAVLEVDYYHSNSLLSMSDSDIVTKAKHDLDQMLGADcVAAEVIDAAVVRLPSGVNWYYPGSYKNMPDTTsTAIPNAYFVGDLVRTRHGSwSQEKAFVTGIEAANAIL 571
                 89*******************99*************9863788888889******************************.6666666666665553457889999******9998526789999999999999999887554333446668899*****************************************9999999****************************************99876515567777774322246778999***************************999*****************9998887665566677788899999999*******94444455566666651556.55555554445889999*********************************995678899***********************988799*************9876467999999999999998 PP

>> TIGR02731  phytoene_desat: phytoene desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.1   0.1   1.2e-10   2.2e-08       1      76 [.      76     154 ..      76     160 .. 0.87
   2 ?    0.5   0.0      0.23        41     145     230 ..     225     311 ..     220     346 .. 0.83
   3 !   17.1   0.0   2.1e-06   0.00037     292     452 ..     407     570 ..     365     571 .. 0.71

  Alignments for each domain:
  == domain 1    score: 31.1 bits;  conditional E-value: 1.2e-10
   TIGR02731   1 rvaiagaglaglsaakyladaghtpi.vleardvlggkvaa.wkdedg.dwyetglhiffgaypnllqllkelniedrl 76 
                 rv++ gag  gls+a+ l+ +g + + v++a+   gg+v+  +    g    e+g h f+g y n+  ll+el+i+d l
  MMETSP1137-20121227|4679_1  76 RVVVVGAGWGGLSVAHALSKSGNVHVtVVDAAPRPGGLVSDgFLTTSGtRRAEAGQHGFWGEYHNIFALLDELSISDAL 154
                 89********************98764889999******8535555551679*************************88 PP

  == domain 2    score: 0.5 bits;  conditional E-value: 0.23
   TIGR02731 145 ldkltlsewlkkqgvpervndevfiaaskalnfidpdelsatvvlt.alnrflqerygsklafldgapperlcqpivdyitsrggev 230
                  d +++ +   + gv++r+ +e f  +  +  f   +e sa+  l  a    l+ +    + +  g+  e +  p v+ +++r    
  MMETSP1137-20121227|4679_1 225 YDSISFRDLCVRLGVSKRLYKEAFEPMILTGLFAPGEECSAAAALGmAYFFVLKHQTSFDVRWARGNVGEVIFAPWVEAMKARNVTF 311
                 588899999999***************999999999999999988514444567777779999***************999987655 PP

  == domain 3    score: 17.1 bits;  conditional E-value: 2.1e-06
   TIGR02731 292 kkleglegvpvinvhlwfdrkltt..vdhllfsrse.llsvyadmsetckeyadpd.ksmlelvlapakdwigrsdeeiieatlkeleklfpdelkadekakllkskvvktprsvykatpgreklrpaq.ktpienfflagdytkqkyla.smegavlsgklaaqai 452
                 ++  +l+g  v+  +l++dr + t       +   e +   + d+ +  k  +d +  ++le+ +  ++  ++ sd++i+  + ++l++++  +      a+++ ++vv+ p  v    pg  k  p+   t i+n ++ gd  + ++ + s e a ++g  aa+ai
  MMETSP1137-20121227|4679_1 407 RRFCNLRGTSVLATRLFLDRPVRTpySANACWGFDEgVGMTWFDIRQLHKPAHDHEpGAVLEVDYYHSNSLLSMSDSDIVTKAKHDLDQMLGADCV---AAEVIDAAVVRLPSGVNWYYPGSYKNMPDTtSTAIPNAYFVGDLVRTRHGSwSQEKAFVTGIEAANAI 570
                 5555666666666666666665531112222222220333456666666666665425789999999********************998776655...799********************99999862589**********998886548899999998888876 PP

>> TIGR02732  zeta_caro_desat: carotene 7,8-desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.4   0.0   3.5e-12   6.3e-10       1     254 [.      76     327 ..      76     346 .. 0.87
   2 ?    4.7   0.0     0.014       2.6     370     474 .]     464     571 ..     454     571 .. 0.84

  Alignments for each domain:
  == domain 1    score: 36.4 bits;  conditional E-value: 3.5e-12
   TIGR02732   1 kvaivgaglaglatavelvdagh.evelyesrsflggkvg.swvdkdg.nhiemglhvffgcyanlfkllkkvgaldnlllkehthlfvnkggeikeldfrfavgapfnglkafftteqlklvdklrnalalatspivrglvdydgalktirdldkisfaewflskggseaslkrmwdpiayalgfidcenisarcmltifalfaakteasv.lrllkgspdkyltkpileyleakgtklylrhkvkeikfekssdge 254
                 +v +vgag  gl+ a  l  +g  +v + ++ +  gg v   +    g    e g h f+g y+n+f+ll+ +   d l        +   g +     +r +      g+   + t  l+l       la + +p+v ++ ++d + +     d+isf++  +  g s++  k  ++p+  +  f   e+ sa   l +  +f  k ++s  +r  +g   + +  p +e ++a+   +    +v  + fe+++d++
  MMETSP1137-20121227|4679_1  76 RVVVVGAGWGGLSVAHALSKSGNvHVTVVDAAPRPGGLVSdGFLTTSGtRRAEAGQHGFWGEYHNIFALLDELSISDALTGYAEQGQYSPDGLQAVWPVYREQKQELPTGIGQALYTRFLNLPL---TDLA-TAAPLVLAFSEFDDSPEAWARYDSISFRDLCVRLGVSKRLYKEAFEPMILTGLFAPGEECSAAAALGMAYFFVLKHQTSFdVRWARGNVGEVIFAPWVEAMKARNVTFMQSTRV--VGFEETADSK 327
                 799*****************99548************996247777762579*****************************9999*******99999999999988889999888899888752...2344.347************************************************99**********************99985499******************9999888766555..5566665554 PP

  == domain 2    score: 4.7 bits;  conditional E-value: 0.014
   TIGR02732 370 gsllqlvltpgdpflkksneeivkrvdkqvkelfps.skelkllwssvvklaqslyreapgmdlfrpdq.ktpianfflagsytkqdy.idsmegatlsgrkaaaail 474
                 g++l++     +  l+ s+ +iv++ ++++ +++ + +   +++  +vv+l+  +    pg     pd  +t+i n ++ g   +  +   s e a ++g +aa+ail
  MMETSP1137-20121227|4679_1 464 GAVLEVDYYHSNSLLSMSDSDIVTKAKHDLDQMLGAdCVAAEVIDAAVVRLPSGVNWYYPGSYKNMPDTtSTAIPNAYFVGDLVRTRHgSWSQEKAFVTGIEAANAIL 571
                 566666666677888999999**9999999887765267899********************99999863799***99999998866525699***********9986 PP

>> TIGR01316  gltA: glutamate synthase (NADPH), homotetrameric
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.8   0.0   3.3e-10   5.8e-08     108     175 ..      49     117 ..      23     122 .. 0.84
   2 ?   -0.0   0.0      0.36        64     369     387 ..     371     389 ..     362     406 .. 0.80

  Alignments for each domain:
  == domain 1    score: 29.8 bits;  conditional E-value: 3.3e-10
   TIGR01316 108 alerfvadyarehGieeeeekapstkkkvaviGaGpaGlavaselakkGh.evtvfealhkpGGvlayG 175
                 +le  v+   r   +e+ ++ ++    +v v+GaG  Gl+va+ l+k G  +vtv +a ++pGG++  G
  MMETSP1137-20121227|4679_1  49 QLEADVGSEHRCFEVEKYSNNEDEEPRRVVVVGAGWGGLSVAHALSKSGNvHVTVVDAAPRPGGLVSDG 117
                 57777777778888888899999999***********************648*************9877 PP

  == domain 2    score: -0.0 bits;  conditional E-value: 0.36
   TIGR01316 369 deevkleadavivaiGqea 387
                 d  ++lead v++a+G  a
  MMETSP1137-20121227|4679_1 371 DPPTRLEADNVVFAVGAAA 389
                 556789**********876 PP

>> TIGR00562  proto_IX_ox: protoporphyrinogen oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.2   0.0     7e-09   1.2e-06       3      79 ..      75     153 ..      73     185 .. 0.82
   2 ?   -3.9   0.0       4.7   8.4e+02     271     293 ..     374     396 ..     366     404 .. 0.85
   3 ?    1.4   0.0      0.11        20     373     400 ..     475     502 ..     469     522 .. 0.86

  Alignments for each domain:
  == domain 1    score: 25.2 bits;  conditional E-value: 7e-09
   TIGR00562   3 kkvvvvGgGisGLciayalekerpdvelvlvEakdRvGGkiy..TrkesG.yllEkGprtlleskegildllkdlGleav 79 
                 + vvvvG+G  GL++a+al+k   +v +++v+a +R GG +       sG    E G + + ++ + i  ll +l + + 
  MMETSP1137-20121227|4679_1  75 RRVVVVGAGWGGLSVAHALSKS-GNVHVTVVDAAPRPGGLVSdgFLTTSGtRRAEAGQHGFWGEYHNIFALLDELSISDA 153
                 68*******************9.89**************99866455555455666777776666667777777777665 PP

  == domain 2    score: -3.9 bits;  conditional E-value: 4.7
   TIGR00562 271 vkvetdsvvltvpakkaaklLke 293
                  ++e+d+vv +v a + ++l+++
  MMETSP1137-20121227|4679_1 374 TRLEADNVVFAVGAAALSGLVRN 396
                 57899************999886 PP

  == domain 3    score: 1.4 bits;  conditional E-value: 0.11
   TIGR00562 373 eeivelseeeiiniVkedLkkvlqisnp 400
                 ++ +++s+++i+   k+dL ++l+ +++
  MMETSP1137-20121227|4679_1 475 NSLLSMSDSDIVTKAKHDLDQMLGADCV 502
                 57899*********************93 PP

>> TIGR03315  Se_ygfK: putative selenate reductase, YgfK subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.0   7.6e-07   0.00014     530     577 ..      67     115 ..      26     118 .. 0.78
   2 ?    1.8   0.0     0.037       6.5     796     839 ..     528     574 ..     505     592 .. 0.82

  Alignments for each domain:
  == domain 1    score: 17.3 bits;  conditional E-value: 7.6e-07
   TIGR03315 530 kpqlksekhkvaviGaGPaGlsagyflaraG.lpvtvfekkekagGvvk 577
                 + + ++e ++v v+GaG  Gls+++ l+++G + vtv++   ++gG v+
  MMETSP1137-20121227|4679_1  67 SNNEDEEPRRVVVVGAGWGGLSVAHALSKSGnVHVTVVDAAPRPGGLVS 115
                 3445566679********************9568************997 PP

  == domain 2    score: 1.8 bits;  conditional E-value: 0.037
   TIGR03315 796 vneetketsvtnvfviGda...kkGPativeaiadgrkaakailsre 839
                    +t+ t ++n + +Gd+   ++G  +  +a  +g +aa+ail+r 
  MMETSP1137-20121227|4679_1 528 NMPDTTSTAIPNAYFVGDLvrtRHGSWSQEKAFVTGIEAANAILHRP 574
                 5568999***********722246889999*************9985 PP

>> TIGR02734  crtI_fam: phytoene desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   0.9   2.8e-07     5e-05       1      36 [.      77     113 ..      77     125 .. 0.88

  Alignments for each domain:
  == domain 1    score: 20.0 bits;  conditional E-value: 2.8e-07
   TIGR02734   1 avViGaGlgGLAlAirLaaaG.ievtvlekrdkpGGR 36 
                 +vV+GaG gGL++A  L + G ++vtv+++  +pGG 
  MMETSP1137-20121227|4679_1  77 VVVVGAGWGGLSVAHALSKSGnVHVTVVDAAPRPGGL 113
                 69*****************99679***********94 PP

>> TIGR03997  mycofact_OYE_2: mycofactocin system FadH/OYE family oxidoreductase 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.1   2.1e-06   0.00037     369     419 ..      64     115 ..      50     128 .. 0.84

  Alignments for each domain:
  == domain 1    score: 16.8 bits;  conditional E-value: 2.1e-06
   TIGR03997 369 eavtlkkarrrkkvlvvGgGPaGleaaataarrGh.rvtllereeelGGqvk 419
                 e+++ ++ +++++v+vvG+G +Gl+ a+  ++ G  +vt+++ + ++GG v 
  MMETSP1137-20121227|4679_1  64 EKYSNNEDEEPRRVVVVGAGWGGLSVAHALSKSGNvHVTVVDAAPRPGGLVS 115
                 44555666778*********************99758************875 PP

>> TIGR01317  GOGAT_sm_gam: glutamate synthase, NADH/NADPH, small subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.1   3.6e-06   0.00065     144     185 ..      75     117 ..      65     121 .. 0.89

  Alignments for each domain:
  == domain 1    score: 16.5 bits;  conditional E-value: 3.6e-06
   TIGR01317 144 kkvavvGsGPaGlaaadqlnraGh.tvtvferedrvGGllryG 185
                 ++v vvG+G  Gl+ a+ l+++G  +vtv + + r GGl+  G
  MMETSP1137-20121227|4679_1  75 RRVVVVGAGWGGLSVAHALSKSGNvHVTVVDAAPRPGGLVSDG 117
                 689********************746*************9877 PP

>> TIGR01318  gltD_gamma_fam: glutamate synthase, small subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   5.9e-06     0.001     141     183 ..      74     117 ..      67     122 .. 0.90
   2 ?   -3.4   0.0       3.3   5.9e+02     139     170 ..     352     383 ..     345     393 .. 0.77

  Alignments for each domain:
  == domain 1    score: 15.5 bits;  conditional E-value: 5.9e-06
   TIGR01318 141 gkrvaviGaGpaGlacadvlaraG.vkvvvfdrypeiGGlltfG 183
                  +rv v+GaG  Gl+ a  l+++G v+v+v d  p+ GGl++ G
  MMETSP1137-20121227|4679_1  74 PRRVVVVGAGWGGLSVAHALSKSGnVHVTVVDAAPRPGGLVSDG 117
                 589*******************99789*************9766 PP

  == domain 2    score: -3.4 bits;  conditional E-value: 3.3
   TIGR01318 139 ktgkrvaviGaGpaGlacadvlaraGvkvvvf 170
                 +++ r++ + + paG a +d  +r   + vvf
  MMETSP1137-20121227|4679_1 352 QQSSRLSAVLCSPAGAAASDPPTRLEADNVVF 383
                 56677777888899999999888888888777 PP

>> TIGR01988  Ubi-OHases: ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.1   9.3e-06    0.0017       2      35 ..      77     110 ..      76     136 .. 0.90
   2 ?   -2.4   0.0         2   3.5e+02     213     254 ..     457     498 ..     457     519 .. 0.83

  Alignments for each domain:
  == domain 1    score: 15.1 bits;  conditional E-value: 9.3e-06
   TIGR01988   2 ivIvGgGlvGlalAlaLassadlkvalveakaae 35 
                 +v+vG+G  Gl++A aL++s++++v++v+a++ +
  MMETSP1137-20121227|4679_1  77 VVVVGAGWGGLSVAHALSKSGNVHVTVVDAAPRP 110
                 8****************************99865 PP

  == domain 2    score: -2.4 bits;  conditional E-value: 2
   TIGR01988 213 PlkdnrsslVwslspeeaeellalseeeflaelnaafgsrlg 254
                 P +d+    V  ++  ++++ll++s+ +++ + ++ +++ lg
  MMETSP1137-20121227|4679_1 457 PAHDHEPGAVLEVDYYHSNSLLSMSDSDIVTKAKHDLDQMLG 498
                 67788888899999999999******9999999999998888 PP

>> TIGR02733  desat_CrtD: C-3',4' desaturase CrtD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.1   9.1e-06    0.0016       3      41 ..      76     115 ..      74     126 .. 0.91

  Alignments for each domain:
  == domain 1    score: 15.0 bits;  conditional E-value: 9.1e-06
   TIGR02733   3 svvviGaGiaGltaaallakrG.levtlleaaaqvGGCas 41 
                 +vvv+GaG +Gl  a  l+k G ++vt+++aa  +GG  s
  MMETSP1137-20121227|4679_1  76 RVVVVGAGWGGLSVAHALSKSGnVHVTVVDAAPRPGGLVS 115
                 79******************99679***********9765 PP

>> TIGR01813  flavo_cyto_c: flavocytochrome c
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   0.2   3.7e-05    0.0065       2      37 ..      77     112 ..      76     129 .. 0.89
   2 ?   -3.8   0.0       4.7   8.4e+02     128     164 ..     292     328 ..     289     339 .. 0.78

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 3.7e-05
   TIGR01813   2 vvvvGsGlAGlsaaleakkaglaevvvleKapviGG 37 
                 vvvvG+G  Gls a ++ k+g  +v v++ ap  GG
  MMETSP1137-20121227|4679_1  77 VVVVGAGWGGLSVAHALSKSGNVHVTVVDAAPRPGG 112
                 9*******************************9999 PP

  == domain 2    score: -3.8 bits;  conditional E-value: 4.7
   TIGR01813 128 sGaeivqklskkakkegvelrlnskvedlikddqgqv 164
                 +G  i  + ++++k ++v+++  ++v+ + +  + ++
  MMETSP1137-20121227|4679_1 292 VGEVIFAPWVEAMKARNVTFMQSTRVVGFEETADSKI 328
                 6777888888999999999999999999888776554 PP

>> TIGR04046  MSMEG_0569_nitr: flavin-dependent oxidoreductase, MSMEG_0569 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.9   0.0   4.7e-05    0.0084     116     196 ..      30     109 ..      14     113 .. 0.77

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 4.7e-05
   TIGR04046 116 eltadqvvvatggyhtpaipklaerlpadvkqlhseeyrnaeqlpdGavlvvGsGqsGaqiaedlhlagrkvhl.avGsaPr 196
                 +lta + +v  + yh  +i+   + + ++ +  + e+y n e+     v+vvG+G  G  +a  l  +g  vh+ +v  aPr
  MMETSP1137-20121227|4679_1  30 QLTAARSMVRVSWYHANHIQL-EADVGSEHRCFEVEKYSNNEDEEPRRVVVVGAGWGGLSVAHALSKSGN-VHVtVVDAAPR 109
                 667777778888888887765.455778888999999999999999999999999999999999998885.55515567787 PP

>> TIGR01372  soxA: sarcosine oxidase, alpha subunit family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.7   0.0   4.7e-05    0.0084     171     209 ..      77     116 ..      43     129 .. 0.86

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 4.7e-05
   TIGR01372 171 vLvvGaGpaGLaaAraAaraG.arvilvdeqaeaGGslls 209
                 v+vvGaG  GL+ A+a +++G ++v++vd  ++ GG + +
  MMETSP1137-20121227|4679_1  77 VVVVGAGWGGLSVAHALSKSGnVHVTVVDAAPRPGGLVSD 116
                 89******************9569************8766 PP

>> TIGR01350  lipoamide_DH: dihydrolipoyl dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.0   0.0   0.00031     0.055     167     204 ..      71     109 ..      45     112 .. 0.86
   2 ?    0.0   0.0      0.33        58     293     332 ..     531     573 ..     527     582 .. 0.75

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 0.00031
   TIGR01350 167 kevpeslvivGgGviGvEfasifaklG.vkvtvielldr 204
                 +e p+++v+vG+G  G+ +a +++k G v+vtv+++++r
  MMETSP1137-20121227|4679_1  71 DEEPRRVVVVGAGWGGLSVAHALSKSGnVHVTVVDAAPR 109
                 688********************9998679****99886 PP

  == domain 2    score: 0.0 bits;  conditional E-value: 0.33
   TIGR01350 293 eelrtnvpgiyaiGDvigklm...LAhvAskegvvaaekiagk 332
                 +++ t +p+ y +GD++++        +A+  g+ aa++i+ +
  MMETSP1137-20121227|4679_1 531 DTTSTAIPNAYFVGDLVRTRHgswSQEKAFVTGIEAANAILHR 573
                 56789**********9875541115689999999999999874 PP

>> TIGR03366  HpnZ_proposed: putative phosphonate catabolism associated alcohol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.7   0.0   6.5e-05     0.012     153     190 ..      71     108 ..      51     117 .. 0.91

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 6.5e-05
   TIGR03366 153 dlegrrvlvlGaGmLGLtaaaaaeerGasrviavDpsa 190
                 d e rrv+v+GaG  GL+ a a+++ G  +v++vD ++
  MMETSP1137-20121227|4679_1  71 DEEPRRVVVVGAGWGGLSVAHALSKSGNVHVTVVDAAP 108
                 46789******************************987 PP

>> TIGR01984  UbiH: 2-polyprenyl-6-methoxyphenol 4-hydroxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.1   0.1   7.6e-05     0.014       2      32 ..      77     107 ..      76     116 .. 0.94

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 7.6e-05
   TIGR01984   2 viivGgglvGlslAlaLsrksklkialieak 32 
                 v++vG+g  Gls+A aLs+ +++++++++a 
  MMETSP1137-20121227|4679_1  77 VVVVGAGWGGLSVAHALSKSGNVHVTVVDAA 107
                 89**************************986 PP

>> TIGR00292  TIGR00292: thiazole biosynthesis enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.0   0.0   0.00011     0.019      23      60 ..      76     114 ..      63     122 .. 0.86

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 0.00011
   TIGR00292  23 DviivGaGpsGLtaayylakeg.lkvvvlerklaiGGGs 60 
                  v++vGaG  GL+ a+ l+k g + v v++    +GG +
  MMETSP1137-20121227|4679_1  76 RVVVVGAGWGGLSVAHALSKSGnVHVTVVDAAPRPGGLV 114
                 59********************99****99988888755 PP

>> TIGR03169  Nterm_to_SelD: pyridine nucleotide-disulfide oxidoreductase family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.0   0.00042     0.074     136     167 ..      65      96 ..      56     105 .. 0.81
   2 ?   -1.1   0.0         1   1.8e+02     201     279 ..     304     387 ..     295     396 .. 0.42

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 0.00042
   TIGR03169 136 lekakaseetkslavvGgGaagvElalalrkr 167
                 + +++++ee+++++vvG+G +g+ +a al k 
  MMETSP1137-20121227|4679_1  65 KYSNNEDEEPRRVVVVGAGWGGLSVAHALSKS 96 
                 44455688899****************99875 PP

  == domain 2    score: -1.1 bits;  conditional E-value: 1
   TIGR03169 201 lakrgievlekeevtevedealllaegetleadavllatgakapawL........aesglsldedGflavkktLqslshpevFaaGD 279
                 +++r+++ +++++v   e e+ ++  +  +++da + +t a+ +  L        + s +   + G  a ++  ++++++ vFa+G 
  MMETSP1137-20121227|4679_1 304 MKARNVTFMQSTRVVGFE-ETADS--KIGAKIDAEIDSTSAEIKSTLrptaqqssRLSAVLCSPAGAAASDPPTRLEADNVVFAVGA 387
                 455555555555555554.22222..1112222222222222222220000000022333345555555566666666666666654 PP

>> TIGR03197  MnmC_Cterm: tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.2   0.00023      0.04       2      35 ..      77     111 ..      76     116 .. 0.91

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 0.00023
   TIGR03197   2 vavIGaGiAgaalalsLarrG.vqvtllekdekla 35 
                 v+v+GaG  g+++a++L++ G v+vt+++++++++
  MMETSP1137-20121227|4679_1  77 VVVVGAGWGGLSVAHALSKSGnVHVTVVDAAPRPG 111
                 89******************9789*****999887 PP

>> TIGR03364  HpnW_proposed: FAD dependent oxidoreductase TIGR03364
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   1.0   0.00047     0.084       2      37 ..      76     112 ..      75     133 .. 0.88

  Alignments for each domain:
  == domain 1    score: 9.7 bits;  conditional E-value: 0.00047
   TIGR03364   2 dvvvvGaGivGlahAlaaarrG.lkVtvierssraaG 37 
                 +vvvvGaG  Gl+ A a ++ G ++Vtv++ ++r+ G
  MMETSP1137-20121227|4679_1  76 RVVVVGAGWGGLSVAHALSKSGnVHVTVVDAAPRPGG 112
                 69********************558*****9999977 PP

>> TIGR02352  thiamin_ThiO: glycine oxidase ThiO
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   1.0   0.00091      0.16       1      30 [.      77     107 ..      77     117 .. 0.86
   2 ?   -3.7   0.0       5.9     1e+03     193     207 ..     375     389 ..     370     394 .. 0.84

  Alignments for each domain:
  == domain 1    score: 8.8 bits;  conditional E-value: 0.00091
   TIGR02352   1 vlviGgGviGlsvAveLakrg.hkvtllekd 30 
                 v+v+G+G  GlsvA+ L+k g  +vt+++ +
  MMETSP1137-20121227|4679_1  77 VVVVGAGWGGLSVAHALSKSGnVHVTVVDAA 107
                 79****************9983479999876 PP

  == domain 2    score: -3.7 bits;  conditional E-value: 5.9
   TIGR02352 193 kvqadqvvlaaGawa 207
                 +++ad+vv+a Ga+a
  MMETSP1137-20121227|4679_1 375 RLEADNVVFAVGAAA 389
                 5789********987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (619 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       158  (0.0385178); expected 82.0 (0.02)
Passed bias filter:                      152  (0.0370551); expected 82.0 (0.02)
Passed Vit filter:                        61  (0.0148708); expected 4.1 (0.001)
Passed Fwd filter:                        23  (0.00560702); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              23  [number of targets reported over threshold]
# CPU time: 0.72u 0.16s 00:00:00.88 Elapsed: 00:00:00.71
# Mc/sec: 1150.72
//
Query:       MMETSP1137-20121227|4680_1  [L=81]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (81 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        75  (0.0182838); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.18s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 368.66
//
Query:       MMETSP1137-20121227|4681_1  [L=167]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (167 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        87  (0.0212092); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.17s 00:00:00.35 Elapsed: 00:00:00.30
# Mc/sec: 734.74
//
Query:       MMETSP1137-20121227|4682_1  [L=325]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (325 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        61  (0.0148708); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.17s 00:00:00.42 Elapsed: 00:00:00.33
# Mc/sec: 1299.89
//
Query:       MMETSP1137-20121227|4684_1  [L=376]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.01   14.0   0.0       0.19    9.9   0.0    2.5  2  TIGR02096 TIGR02096: conserved hypothetical protein


Domain annotation for each model (and alignments):
>> TIGR02096  TIGR02096: conserved hypothetical protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.0     0.021        85      98     116 ..     154     173 ..      83     175 .. 0.86
   2 ?    9.9   0.0   4.7e-05      0.19      16      51 ..     232     267 ..     220     299 .. 0.80

  Alignments for each domain:
  == domain 1    score: 1.3 bits;  conditional E-value: 0.021
   TIGR02096  98 svrgvtffeld.dGkIeret 116
                  +rg  f eld +GkI+ ++
  MMETSP1137-20121227|4684_1 154 GLRGTMFLELDeEGKIAYVC 173
                 58999999999999998776 PP

  == domain 2    score: 9.9 bits;  conditional E-value: 4.7e-05
   TIGR02096  16 mdavlallaeDvlyddeagsrklktkdqlarflael 51 
                  d++++ ++eD+ y+d   +++  +k+q+a+f+ ++
  MMETSP1137-20121227|4684_1 232 PDEAVRCFSEDIRYEDFNYPDPFLGKEQVAAFVTAF 267
                 58999***************************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (376 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        99  (0.0241346); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.29u 0.17s 00:00:00.46 Elapsed: 00:00:00.49
# Mc/sec: 1012.81
//
Query:       MMETSP1137-20121227|4685_1  [L=553]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (553 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        34  (0.00828864); expected 82.0 (0.02)
Passed bias filter:                       33  (0.00804486); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.17s 00:00:00.54 Elapsed: 00:00:00.42
# Mc/sec: 1737.86
//
Query:       MMETSP1137-20121227|4686_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        21  (0.00511945); expected 82.0 (0.02)
Passed bias filter:                       18  (0.0043881); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.15s 00:00:00.26 Elapsed: 00:00:00.28
# Mc/sec: 249.84
//
Query:       MMETSP1137-20121227|4687_1  [L=75]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (75 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        31  (0.00755729); expected 82.0 (0.02)
Passed bias filter:                       29  (0.00706972); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.13s 00:00:00.26 Elapsed: 00:00:00.27
# Mc/sec: 366.64
//
Query:       MMETSP1137-20121227|4688_1  [L=604]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.1e-65  217.2   2.6    9.3e-65  216.1   1.8    1.6  1  TIGR02881 spore_V_K: stage V sporulation protein K
    2.6e-53  179.2   5.1    5.1e-53  178.3   3.5    1.5  1  TIGR03922 T7SS_EccA: type VII secretion AAA-ATPase EccA
      6e-49  164.6   1.0    1.6e-48  163.2   0.7    1.7  1  TIGR02880 cbbX_cfxQ: CbbX protein
    1.9e-07   28.3   5.0    9.6e-07   25.9   0.1    3.2  3  TIGR00635 ruvB: Holliday junction DNA helicase RuvB
    6.3e-05   18.9   0.1    0.00012   18.0   0.1    1.4  1  TIGR01448 recD_rel: helicase, RecD/TraA family
    0.00013   19.9   1.1    0.00013   19.9   0.7    2.5  2  TIGR03499 FlhF: flagellar biosynthesis protein FlhF
     0.0021   15.5   0.0      0.005   14.3   0.0    1.6  1  TIGR01351 adk: adenylate kinases
  ------ inclusion threshold ------
      0.013   12.6   1.5      0.033   11.3   0.0    2.5  4  TIGR02397 dnaX_nterm: DNA polymerase III, subunit gamma and tau
      0.022   12.3   5.6      0.063   10.8   0.0    2.9  3  TIGR00041 DTMP_kinase: thymidylate kinase


Domain annotation for each model (and alignments):
>> TIGR02881  spore_V_K: stage V sporulation protein K
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  216.1   1.8   2.1e-67   9.3e-65       1     260 [.     133     394 ..     133     395 .. 0.94

  Alignments for each domain:
  == domain 1    score: 216.1 bits;  conditional E-value: 2.1e-67
   TIGR02881   1 vekeleklvGleevkelikeiyalilinekrkeeglkaekqvlhmifkGnPGtGkttvarllaklfkelnvlskGhlieveradlvGeyiGhtaqktrevikkalGGvlfideayslarG...GekdfGkeaidtlvkemedk.reelvlilaGysdemdyflslnPGlksrfpisldfpdytveelleiakkmveereyklteeakaklreklakvksasekefsnarlvrnliekairrqavrllkksdvskedllllkked 260
                 +e+el klvG+e vke+++++     ++ +r++eg  + +   hm+f+GnPG Gktt++rl+a+l+++l+v sk h++ev++ dlv  y+ +ta kt ++ik+a G +lf+deay l++    G+ df  eaid ++k m+d+ r+   +i+aGy++emd f++ n Gl+sr+  +++f+dy+v el++i++  ++ + yklt +a+a+l +++ k ++++ +   n+rl  nl++ a  +   rl  k  ++ ++l++l+++d
  MMETSP1137-20121227|4688_1 133 MEEELAKLVGMESVKESMRKLCKQLSLDIRRRQEGRGVLDSIRHMVFTGNPGVGKTTISRLVARLYHQLGVSSKDHVVEVQKGDLVAGYVNQTAMKTAKKIKEARGAILFVDEAYQLTQAlqrGQSDFSGEAIDEMMKVMNDTgRKACTFIFAGYKKEMDEFIQYNAGLESRIKYRFHFDDYSVAELVTIMNIKIKSKGYKLTPDASAHLGSIIDKGTTKELRAKYNGRLTDNLLQWASDEMNTRLPLK--ATGDQLVTLERAD 394
                 5789***************************************************************************************************************99864444999***************984677889**************************************************************************************9999988888544..5566777777776 PP

>> TIGR03922  T7SS_EccA: type VII secretion AAA-ATPase EccA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  178.3   3.5   1.1e-55   5.1e-53     204     554 ..      65     401 ..       7     404 .. 0.81

  Alignments for each domain:
  == domain 1    score: 178.3 bits;  conditional E-value: 1.1e-55
   TIGR03922 204 lLeklyandpetekvkeALadpsyrlvltdaekieaRtDpWDpssaksraeleda.aaaerkaklLaEaeaeLakqiGlervkeqvaalkssvevalvRaerGlavaqrskHlllaGPPGtGkttiArvvakiyaGlgvlrkpevrEvsRadligeyigeseaktnelidkaLggvlFlDEayaLvek.rdgakddfGleaidtLLarlEn.dRdrlvviiAGYekdlDklLevneGLrsRFtrkieFesYspdElveiakrmaeerdsvlddaAaealleaatklaqestpdanGverrglDiagngrfvRnvvEraeeeRdfRldasdrldevtvddlkeiteddvaravks 554
                  L+++  +  e ++  e L+++  +     ++  +a   + D + ++ ++e e +   +e+  k   E e eLak++G+e vke +++l +++ ++++R++ G  v    +H+++ G PG Gktti r va++y  lgv  k++v+Ev++ dl++ y+ +++ kt + i +a g +lF+DEay L +  + g++ df  eaid ++  +++  R    +i AGY+k++D++++ n GL sR + + +F+ Ys +Elv i +   +++   l+  A  +l + + k          G + + l +  ngr   n+   a +e ++Rl  +      t d+l ++  +d+++avk 
  MMETSP1137-20121227|4688_1  65 TLKTIREKCLEYTARAEHLKESMNGGPQGGKKAAAAGGGKGDEDDTVDEDEPEPEpLTEEQLQKAEQEMEEELAKLVGMESVKESMRKLCKQLSLDIRRRQEGRGVLDSIRHMVFTGNPGVGKTTISRLVARLYHQLGVSSKDHVVEVQKGDLVAGYVNQTAMKTAKKIKEARGAILFVDEAYQLTQAlQRGQS-DFSGEAIDEMMKVMNDtGRKACTFIFAGYKKEMDEFIQYNAGLESRIKYRFHFDDYSVAELVTIMNIKIKSKGYKLTPDASAHLGSIIDK----------G-TTKELRAKYNGRLTDNLLQWASDEMNTRLPLKA-----TGDQLVTLERADIEKAVKR 401
                 5555555555555555555555555555555555555555666666666665543044445556667999**********************************************************************************************************************566665.5777999*999999752699999********************************************99********9999998765432..........3.346788999********************9988.....8999999*******99986 PP

>> TIGR02880  cbbX_cfxQ: CbbX protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  163.2   0.7   3.5e-51   1.6e-48       7     237 ..     124     356 ..     119     400 .. 0.84

  Alignments for each domain:
  == domain 1    score: 163.2 bits;  conditional E-value: 3.5e-51
   TIGR02880   7 eyeesgikevldeldreliglkpvktrireiaalllverlrqklglasaapslhmsftgnpgtgkttvalrmakilhrlgyvrkghlvsvtrddlvgqyightapktkevlkramggvlfideayylyrp..dnerdygqeaieillqvmenq.rddlvvilagykdrmdsffesnpglssrvahhvdfpdyseeellaiaellleeqqyrlsaeaeealaeyialrrkqpffa 237
                 e  ++  +e+ +el  +l+g++ vk+ +r++   l ++  r++ g        hm ftgnpg gktt++  +a++ h+lg   k h+v v + dlv  y+  ta kt + +k a g +lf+deay l +     + d+  eai+ +++vm++  r+    i+agyk+ md+f + n gl+sr+    +f dys +el++i ++ ++ + y+l+ +a + l + i +  ++   a
  MMETSP1137-20121227|4688_1 124 EQLQKAEQEMEEELA-KLVGMESVKESMRKLCKQLSLDIRRRQEGRGVLDSIRHMVFTGNPGVGKTTISRLVARLYHQLGVSSKDHVVEVQKGDLVAGYVNQTAMKTAKKIKEARGAILFVDEAYQLTQAlqRGQSDFSGEAIDEMMKVMNDTgRKACTFIFAGYKKEMDEFIQYNAGLESRIKYRFHFDDYSVAELVTIMNIKIKSKGYKLTPDASAHLGSIIDKGTTKELRA 356
                 444444455555554.59*************************************************************************************************************997325678**************87549999***********************************************************99999998877665544 PP

>> TIGR00635  ruvB: Holliday junction DNA helicase RuvB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.0     0.021       9.5     220     289 ..      58     129 ..      12     132 .. 0.73
   2 !   25.9   0.1   2.1e-09   9.6e-07      11      98 ..     152     254 ..     135     376 .. 0.69
   3 ?   -4.1   0.2       2.9   1.3e+03     184     229 ..     534     579 ..     528     600 .. 0.62

  Alignments for each domain:
  == domain 1    score: 3.0 bits;  conditional E-value: 0.021
   TIGR00635 220 kiakealeklkvdelGldelDrklLkaliekfeggPvGletlaaa...lgedaetl.edvlePyLlqegllqrt 289
                 k +k+ ++  ++ e+ l+ + r+  + l e+++ggP+G +  aaa    g + +t+ ed  eP  l+e  lq++
  MMETSP1137-20121227|4688_1  58 KYEKNPVTLKTIREKCLEYTARA--EHLKESMNGGPQGGKKAAAAgggKGDEDDTVdEDEPEPEPLTEEQLQKA 129
                 55555666667777777776664..6789*********999998822235677888456778887777777776 PP

  == domain 2    score: 25.9 bits;  conditional E-value: 2.1e-09
   TIGR00635  11 kvkeklqlfikaakkrkeald...hvllyGPPGlGkttlakiiakelgvklkitsgpale..kpgDlaa.......ilta..le..egdvlfiDeihrlskave 98 
                 k+ ++l+l i+  ++ + +ld   h++++G PG+Gktt+++++a+ l  +l + s  ++   ++gDl+a       + ta  ++  +g +lf+De ++l++a++
  MMETSP1137-20121227|4688_1 152 KLCKQLSLDIRRRQEGRGVLDsirHMVFTGNPGVGKTTISRLVAR-LYHQLGVSSKDHVVevQKGDLVAgyvnqtaMKTAkkIKeaRGAILFVDEAYQLTQALQ 254
                 444567777776666555554444*******************96.56667776666653125677765222111132322233224789*****999988754 PP

  == domain 3    score: -4.1 bits;  conditional E-value: 2.9
   TIGR00635 184 aleiarrsrgtprianrllrrvrdfaqvkeekvinkkiakealekl 229
                  +e++ +  gt r  +r +   rd  + k+++ i  ++  +  ++ 
  MMETSP1137-20121227|4688_1 534 LKEMGIHEVGTRRKVMRAITFWRDDREYKKAEAIRARMIAQEQKNQ 579
                 5566666677777777777777777777777777665554444444 PP

>> TIGR01448  recD_rel: helicase, RecD/TraA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.1   2.6e-07   0.00012     278     367 ..     121     203 ..      97     253 .. 0.72

  Alignments for each domain:
  == domain 1    score: 18.0 bits;  conditional E-value: 2.6e-07
   TIGR01448 278 ialrslflaEkkiasdirrllakskkieeindekhilevekklelelseeqkealktaiqdkvviltGGPGtGKtTvtkaiielaeeleg 367
                 +  ++l +aE+++  ++ +l         +++++  l  +  l++   +e + +l+++   + +++tG PG+GKtT+ + ++ l+ +l  
  MMETSP1137-20121227|4688_1 121 LTEEQLQKAEQEMEEELAKLVGMES----VKESMRKLCKQLSLDIRRRQEGRGVLDSI---RHMVFTGNPGVGKTTISRLVARLYHQLGV 203
                 5667888888888888888887666....33332223444445555555556677655...55899*******************99874 PP

>> TIGR03499  FlhF: flagellar biosynthesis protein FlhF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.7   2.7e-07   0.00013     133     222 ..      96     197 ..       2     205 .. 0.62
   2 ?   -1.8   0.7       1.2   5.4e+02     133     185 ..     513     572 ..     448     588 .. 0.46

  Alignments for each domain:
  == domain 1    score: 19.9 bits;  conditional E-value: 2.7e-07
   TIGR03499 133 l................eeedperakllkklleagvseelarelleklkekedaeeareklreaLekklsvkkeedeilekggviaLvGptGvGKTTTlAKLAarf 222
                 +                e e+++    +++l++   ++e+ +el++ + + e+ +e ++kl + L+  ++ ++e + +l+  + +++ G++GvGKTT + +L ar+
  MMETSP1137-20121227|4688_1  96 KaaaagggkgdeddtvdEDEPEPEPLTEEQLQK--AEQEMEEELAKLVGM-ESVKESMRKLCKQLSLDIRRRQEGRGVLDSIRHMVFTGNPGVGKTT-ISRLVARL 197
                 044455555555666533333333333344444..467777888888888.77888999999*********************************85.77777766 PP

  == domain 2    score: -1.8 bits;  conditional E-value: 1.2
   TIGR03499 133 l.......eeedperakllkklleagvseelarelleklkekedaeeareklreaLekkl 185
                 +          +  ++  ++ l+e+g++e  +r+ + ++ +  ++++ ++k +++ ++++
  MMETSP1137-20121227|4688_1 513 TkvfekhrVDFEVLGDISYDDLKEMGIHEVGTRRKVMRAITFWRDDREYKKAEAIRARMI 572
                 223332222233333334555555555554444444444443333333444444444444 PP

>> TIGR01351  adk: adenylate kinases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.0   1.1e-05     0.005       2      48 ..     177     233 ..     176     250 .. 0.72

  Alignments for each domain:
  == domain 1    score: 14.3 bits;  conditional E-value: 1.1e-05
   TIGR01351   2 lvllGpPGsGKGTqakrlaeklg.........lvhistGdllRaevkkk.telgkka 48 
                 +v+ G PG+GK T+++ +a  ++         +v++  Gdl+   v++   + +kk+
  MMETSP1137-20121227|4688_1 177 MVFTGNPGVGKTTISRLVARLYHqlgvsskdhVVEVQKGDLVAGYVNQTaMKTAKKI 233
                 79***************9999985556665556666666666666555433444555 PP

>> TIGR02397  dnaX_nterm: DNA polymerase III, subunit gamma and tau
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   7.1e-05     0.033      40      59 ..     178     197 ..     172     211 .. 0.89
   2 ?   -3.0   0.0       1.5   7.1e+02     134     154 ..     265     286 ..     243     342 .. 0.49
   3 ?   -2.9   0.0       1.4   6.5e+02     254     283 ..     462     491 ..     450     519 .. 0.68
   4 ?   -3.5   0.1       2.2     1e+03     283     316 ..     551     586 ..     533     602 .. 0.48

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 7.1e-05
   TIGR02397  40 LfsGprGvGKTsiArilAka 59 
                 +f+G+ GvGKT+i+r++A+ 
  MMETSP1137-20121227|4688_1 178 VFTGNPGVGKTTISRLVARL 197
                 8****************985 PP

  == domain 2    score: -3.0 bits;  conditional E-value: 1.5
   TIGR02397 134 fnaLLKtlEePpeh.vvFilaT 154
                  + ++K++ +  ++ + Fi+a 
  MMETSP1137-20121227|4688_1 265 IDEMMKVMNDTGRKaCTFIFAG 286
                 3333333333322213344443 PP

  == domain 3    score: -2.9 bits;  conditional E-value: 1.4
   TIGR02397 254 ilkkdleealklleellekgvdleklledl 283
                 + + d+++a++l+++l +++ ++++ ++ l
  MMETSP1137-20121227|4688_1 462 TKDADVRRAMALVNQLKQSHRQMSNEMDAL 491
                 455666777777777777777766665554 PP

  == domain 4    score: -3.5 bits;  conditional E-value: 2.2
   TIGR02397 283 liellrdlllvkktk...selleveeeeeeslkekae 316
                  i++ rd   +kk++   ++++++e++++++ ++++ 
  MMETSP1137-20121227|4688_1 551 AITFWRDDREYKKAEairARMIAQEQKNQQF-NQQSL 586
                 4555555555555554433333333333332.22222 PP

>> TIGR00041  DTMP_kinase: thymidylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.9   0.1       4.6   2.1e+03     146     175 ..     126     155 ..     122     160 .. 0.66
   2 ?   10.8   0.0   0.00014     0.063       7      74 ..     177     245 ..     172     257 .. 0.82
   3 ?    3.4   0.2     0.025        11      34      84 ..     551     602 ..     543     604 .] 0.85

  Alignments for each domain:
  == domain 1    score: -3.9 bits;  conditional E-value: 4.6
   TIGR00041 146 lskrgeldreelekldflekvrekylelad 175
                 l+k +++ +eel kl  +e+v+e   +l +
  MMETSP1137-20121227|4688_1 126 LQKAEQEMEEELAKLVGMESVKESMRKLCK 155
                 455555456777777778888888887776 PP

  == domain 2    score: 10.8 bits;  conditional E-value: 0.00014
   TIGR00041   7 iviEGidGaGKTtqlellkkllke..eglkvlltrEPggtklgekirelllteneepleekaealLFaad 74 
                 +v+ G  G GKTt++ l+++l+++   + k ++++   g  ++  +++   +++ ++++e+  a LF  +
  MMETSP1137-20121227|4688_1 177 MVFTGNPGVGKTTISRLVARLYHQlgVSSKDHVVEVQKGDLVAGYVNQT-AMKTAKKIKEARGAILFVDE 245
                 6888999*****************654456778888889999******9.88888888889999999865 PP

  == domain 3    score: 3.4 bits;  conditional E-value: 0.025
   TIGR00041  34 kvlltrEPggtklgekirel.llteneepleekaealLFaadRaehveekik 84 
                 ++++ r+ ++ k +e ir+  + +e+++++++++ +l  aa+R+  +++ +k
  MMETSP1137-20121227|4688_1 551 AITFWRDDREYKKAEAIRARmIAQEQKNQQFNQQSLLSDAAQRIDMLRKQVK 602
                 5678889999999*****87699999*****999999999999998888887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (604 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       353  (0.0860556); expected 82.0 (0.02)
Passed bias filter:                      137  (0.0333983); expected 82.0 (0.02)
Passed Vit filter:                        30  (0.00731351); expected 4.1 (0.001)
Passed Fwd filter:                         9  (0.00219405); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.58u 0.17s 00:00:00.75 Elapsed: 00:00:00.75
# Mc/sec: 1062.95
//
Query:       MMETSP1137-20121227|4689_1  [L=163]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (163 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        69  (0.0168211); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.13s 00:00:00.29 Elapsed: 00:00:00.28
# Mc/sec: 768.37
//
Query:       MMETSP1137-20121227|4690_1  [L=89]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (89 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        25  (0.00609459); expected 82.0 (0.02)
Passed bias filter:                       25  (0.00609459); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.15s 00:00:00.27 Elapsed: 00:00:00.31
# Mc/sec: 378.94
//
Query:       MMETSP1137-20121227|4691_1  [L=281]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.2e-10   36.8   0.0    2.9e-10   36.5   0.0    1.1  1  TIGR03903 TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
    1.1e-05   22.9   0.0    1.5e-05   22.4   0.0    1.2  1  TIGR03724 arch_bud32: Kae1-associated kinase Bud32


Domain annotation for each model (and alignments):
>> TIGR03903  TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.5   0.0   1.4e-13   2.9e-10      68     165 ..      26     121 ..      15     142 .. 0.77

  Alignments for each domain:
  == domain 1    score: 36.5 bits;  conditional E-value: 1.4e-13
   TIGR03903  68 evLaadGaLpaaetgrLmlqvLDalaaahdaGvvhRDLkPqnimvsaadveshakvLDFGigaLlpgvedadeatltrttevlGsPaYaaPeqLRgep 165
                 ++L   G+L+             ala+ hd+GvvhRD+k +n m+ a d +   k+LDFG++  +p  e     +  +  + +Gs +Y aPe     +
  MMETSP1137-20121227|4691_1  26 DRLIDSGSLSERAARPYAKGLASALAHCHDKGVVHRDVKLENAMLCAHDAH-ALKLLDFGLAVQVPLSER-GGFEEEKFFDGVGSRSYKAPEMWSASA 121
                 66777777777766666666778***********************99875.569******999887666.555666777889999999999766555 PP

>> TIGR03724  arch_bud32: Kae1-associated kinase Bud32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.4   0.0   7.4e-09   1.5e-05      86     169 ..      36     118 ..      14     125 .. 0.77

  Alignments for each domain:
  == domain 1    score: 22.4 bits;  conditional E-value: 7.4e-09
   TIGR03724  86 dlleekelellkevGelvgklHkagivhgDlttsNiiv...kddklyliDfGLgkkskevedkavDlhvlkrslestheelaeelie 169
                 +   +    ++k ++ +++++H++g+vh D+  +N ++   +++ l l+DfGL+ +    e  + +   +++ + s +++ a e+++
  MMETSP1137-20121227|4691_1  36 ERAAR---PYAKGLASALAHCHDKGVVHRDVKLENAMLcahDAHALKLLDFGLAVQVPLSERGGFEEEKFFDGVGSRSYK-APEMWS 118
                 33333...7899999********************999543366788*******99988888888888888888777777.555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (281 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        40  (0.00975134); expected 82.0 (0.02)
Passed bias filter:                       35  (0.00853242); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.22u 0.17s 00:00:00.39 Elapsed: 00:00:00.40
# Mc/sec: 927.22
//
Query:       MMETSP1137-20121227|4692_1  [L=463]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.025   12.1   0.0      0.048   11.2   0.0    1.4  1  TIGR02647 DNA: TIGR02647 family protein


Domain annotation for each model (and alignments):
>> TIGR02647  DNA: TIGR02647 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   1.2e-05     0.048      48      76 ..      95     123 ..      88     124 .. 0.92

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 1.2e-05
   TIGR02647  48 LtdqpDGGYLtslGleaaehaqklltiLk 76 
                 L +qp GG  t  G +aa +aq l+++L+
  MMETSP1137-20121227|4692_1  95 LRKQPAGGKSTASGQQAASSAQPLIEVLS 123
                 678************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (463 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        62  (0.0151146); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.15s 00:00:00.48 Elapsed: 00:00:00.47
# Mc/sec: 1300.23
//
Query:       MMETSP1137-20121227|4693_1  [L=568]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (568 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       107  (0.0260848); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.17s 00:00:00.53 Elapsed: 00:00:00.42
# Mc/sec: 1785.00
//
Query:       MMETSP1137-20121227|4694_1  [L=137]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (137 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        40  (0.00975134); expected 82.0 (0.02)
Passed bias filter:                       36  (0.00877621); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.14s 00:00:00.31 Elapsed: 00:00:00.24
# Mc/sec: 753.44
//
Query:       MMETSP1137-20121227|4695_1  [L=33]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (33 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        11  (0.00268162); expected 82.0 (0.02)
Passed bias filter:                       10  (0.00243784); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.17s 00:00:00.28 Elapsed: 00:00:00.26
# Mc/sec: 167.52
//
Query:       MMETSP1137-20121227|4696_1  [L=32]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (32 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        20  (0.00487567); expected 82.0 (0.02)
Passed bias filter:                       18  (0.0043881); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.17s 00:00:00.27 Elapsed: 00:00:00.32
# Mc/sec: 131.99
//
Query:       MMETSP1137-20121227|4697_1  [L=143]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.3e-46  152.9   0.2    5.7e-46  152.5   0.1    1.2  1  TIGR00365 TIGR00365: monothiol glutaredoxin, Grx4 family
    3.7e-13   47.4   0.0    7.5e-13   46.4   0.0    1.5  2  TIGR02181 GRX_bact: glutaredoxin 3
    6.8e-12   43.3   0.0      1e-11   42.7   0.0    1.3  1  TIGR02180 GRX_euk: glutaredoxin
    8.6e-06   23.5   0.0    1.3e-05   23.0   0.0    1.3  1  TIGR02189 GlrX-like_plant: glutaredoxin-like family
    3.1e-05   21.7   0.0    4.7e-05   21.1   0.0    1.3  1  TIGR02190 GlrX-dom: glutaredoxin-family domain
    9.7e-05   20.7   0.0    0.00018   19.8   0.0    1.4  1  TIGR02196 GlrX_YruB: glutaredoxin-like protein, YruB-family


Domain annotation for each model (and alignments):
>> TIGR00365  TIGR00365: monothiol glutaredoxin, Grx4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  152.5   0.1   8.4e-49   5.7e-46       2      98 ..      42     138 ..      41     139 .. 0.98

  Alignments for each domain:
  == domain 1    score: 152.5 bits;  conditional E-value: 8.4e-49
   TIGR00365   2 kekikeqvkenkvvlymkGtpelpqCGfsakavqilkalgvefatvnvledeeireelkeysnWPtiPqlyvkgelvGGcdivlelyesgelkkllk 98 
                 +e+ike v++nkv+l+mkG++ +pqCGfs++avqil+a++v ++t++vl+d++ire++keysnWPtiPq y++ge++GGcdi++e+y+sgel+++l+
  MMETSP1137-20121227|4697_1  42 EERIKEMVESNKVMLFMKGNKMFPQCGFSNTAVQILNAVDVPYETFDVLSDQDIREGVKEYSNWPTIPQCYIEGEFIGGCDIMIEMYQSGELQEMLE 138
                 689*******************************************************************************************997 PP

>> TIGR02181  GRX_bact: glutaredoxin 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0         1     7e+02      35      44 ..      42      51 ..      29      66 .. 0.51
   2 !   46.4   0.0   1.1e-15   7.5e-13       7      80 .]      65     137 ..      61     137 .. 0.97

  Alignments for each domain:
  == domain 1    score: -1.6 bits;  conditional E-value: 1
   TIGR02181 35 keareemier 44
                +e+ +em+e 
  MMETSP1137-20121227|4697_1 42 EERIKEMVES 51
                3333444332 PP

  == domain 2    score: 46.4 bits;  conditional E-value: 1.1e-15
   TIGR02181   7 ksCpycsrAkalLeekgvefeeievdkdkeareemierskgrrtvPQifigdvhvGGcddLlaleregkLdkLL 80 
                 ++C+++++A ++L++ +v +e ++v +d++ re + e s+   t+PQ +i+ + +GGcd ++++ ++g+L+++L
  MMETSP1137-20121227|4697_1  65 PQCGFSNTAVQILNAVDVPYETFDVLSDQDIREGVKEYSN-WPTIPQCYIEGEFIGGCDIMIEMYQSGELQEML 137
                 58*************************************6.******************************998 PP

>> TIGR02180  GRX_euk: glutaredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.7   0.0   1.5e-14     1e-11       7      84 .]      65     137 ..      54     137 .. 0.88

  Alignments for each domain:
  == domain 1    score: 42.7 bits;  conditional E-value: 1.5e-14
   TIGR02180   7 syCpYckkakelLkklkvkkalevveldklengselqdyLkeltgqrtVPrifingkfiGGsddlkklekkgkleell 84 
                 + C +++ a ++L+   v   +e+ ++ +    +++++  ke+++  t+P+ +i+g+fiGG+d + +++++g+l+e+l
  MMETSP1137-20121227|4697_1  65 PQCGFSNTAVQILNAVDVP--YETFDVLSD---QDIREGVKEYSNWPTIPQCYIEGEFIGGCDIMIEMYQSGELQEML 137
                 47************88777..888777655...89****************************************986 PP

>> TIGR02189  GlrX-like_plant: glutaredoxin-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.0   0.0   1.8e-08   1.3e-05       3      96 ..      47     142 ..      45     143 .] 0.77

  Alignments for each domain:
  == domain 1    score: 23.0 bits;  conditional E-value: 1.8e-08
   TIGR02189   3 rlvsekavvifskss.....CClshvvkrLllelGvnPavveldkeaeakeiekallelgskeavPvvfvGGklvGgleevmalhlsgsLvpllkkaga 96 
                 ++v  + v++f k       C +s ++ ++l  + v    +++ ++   ++i + + e++  +++P  ++ G+++Gg + ++ ++ sg+L ++l+++ a
  MMETSP1137-20121227|4697_1  47 EMVESNKVMLFMKGNkmfpqCGFSNTAVQILNAVDVPYETFDVLSD---QDIREGVKEYSNWPTIPQCYIEGEFIGGCDIMIEMYQSGELQEMLERVAA 142
                 6777777777766432333477888888888888877666666655...6677777777779********************************99876 PP

>> TIGR02190  GlrX-dom: glutaredoxin-family domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1   0.0   6.8e-08   4.7e-05      10      74 ..      54     124 ..      45     129 .. 0.77

  Alignments for each domain:
  == domain 1    score: 21.1 bits;  conditional E-value: 6.8e-08
   TIGR02190  10 vsvftk.....pGCPfCakakavLkekG..ldfeeivLgkdirtrslravtGattvPqvfinGkliGgsdel 74 
                 v +f k     p C f   a + L++    ++  ++  ++dir   ++  +   t+Pq +i+G++iGg d +
  MMETSP1137-20121227|4697_1  54 VMLFMKgnkmfPQCGFSNTAVQILNAVDvpYETFDVLSDQDIRE-GVKEYSNWPTIPQCYIEGEFIGGCDIM 124
                 555555444446799999****9987661156668999999996.67999******************9965 PP

>> TIGR02196  GlrX_YruB: glutaredoxin-like protein, YruB-family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   0.0   2.6e-07   0.00018       8      64 ..      65     121 ..      63     136 .. 0.93

  Alignments for each domain:
  == domain 1    score: 19.8 bits;  conditional E-value: 2.6e-07
   TIGR02196   8 pwCppCkkakeyLkskgiafeeidvekdsaaaeellkklgqrsvPvivigekivvGF 64 
                 p+C+  + a + L++  +++e++dv  d+  +e + + ++   +P+  i+++ + G 
  MMETSP1137-20121227|4697_1  65 PQCGFSNTAVQILNAVDVPYETFDVLSDQDIREGVKEYSNWPTIPQCYIEGEFIGGC 121
                 78************************************************9988775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (143 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       116  (0.0282789); expected 82.0 (0.02)
Passed bias filter:                      112  (0.0273038); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.19u 0.15s 00:00:00.34 Elapsed: 00:00:00.28
# Mc/sec: 650.84
//
Query:       MMETSP1137-20121227|4698_1  [L=638]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (638 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       119  (0.0290102); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.16s 00:00:00.57 Elapsed: 00:00:00.79
# Mc/sec: 1065.94
//
Query:       MMETSP1137-20121227|4699_1  [L=571]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (571 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        76  (0.0185275); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.16s 00:00:00.51 Elapsed: 00:00:00.61
# Mc/sec: 1235.50
//
Query:       MMETSP1137-20121227|4700_1  [L=1356]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1356 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       341  (0.0831302); expected 82.0 (0.02)
Passed bias filter:                       97  (0.023647); expected 82.0 (0.02)
Passed Vit filter:                        20  (0.00487567); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.90u 0.15s 00:00:01.05 Elapsed: 00:00:01.05
# Mc/sec: 1704.54
//
Query:       MMETSP1137-20121227|4701_1  [L=336]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (336 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       255  (0.0621648); expected 82.0 (0.02)
Passed bias filter:                      113  (0.0275475); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.16s 00:00:00.44 Elapsed: 00:00:00.34
# Mc/sec: 1304.36
//
Query:       MMETSP1137-20121227|4702_1  [L=384]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.3e-43  147.1   3.1    1.6e-35  120.5   0.1    2.3  2  TIGR02963 xanthine_xdhA: xanthine dehydrogenase, small subunit
    2.3e-30  102.9   2.3    2.1e-23   80.3   0.3    2.2  2  TIGR03198 pucE: xanthine dehydrogenase E subunit
      1e-29  100.6   1.8    1.6e-24   83.3   0.1    2.1  2  TIGR02969 mam_aldehyde_ox: aldehyde oxidase
    1.4e-29  100.8   4.7      2e-22   77.6   0.3    2.8  3  TIGR03193 4hydroxCoAred: 4-hydroxybenzoyl-CoA reductase, gamma subunit
    1.3e-24   84.1   0.9    1.9e-19   67.0   0.1    2.1  2  TIGR03311 Se_dep_Molyb_1: selenium-dependent molybdenum hydroxylase 1
    8.1e-07   24.9   0.0    1.1e-06   24.4   0.0    1.1  1  TIGR03313 Se_sel_red_Mo: probable selenate reductase, molybdenum-binding subunit


Domain annotation for each model (and alignments):
>> TIGR02963  xanthine_xdhA: xanthine dehydrogenase, small subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.9   0.3   5.5e-10   3.8e-07      26      52 ..     206     232 ..     196     239 .. 0.90
   2 !  120.5   0.1   2.3e-38   1.6e-35      61     155 ..     284     378 ..     273     384 .] 0.91

  Alignments for each domain:
  == domain 1    score: 26.9 bits;  conditional E-value: 5.5e-10
   TIGR02963  26 RekarltGtkeGCaeGdCGActvvvge 52 
                 Re+a ltGtk+ C eG+CGActv++ +
  MMETSP1137-20121227|4702_1 206 RERALLTGTKLSCREGGCGACTVLLRR 232
                 89999******************9866 PP

  == domain 2    score: 120.5 bits;  conditional E-value: 2.3e-38
   TIGR02963  61 ykavnaCiqfvsaldgkavvtvEdlkktdgalHpvqqalveaHgsqCGfCtPGfvmslyallknk.ekpskediedalqgnLCRCtGYrpildaae 155
                 +  vnaC++ ++a dg+++vtvE+++ ++ga H vq+alvea +sqCGfCtPG+v ++ all+++  +p+++d+eda+ gnLCRCtGYr i daa 
  MMETSP1137-20121227|4702_1 284 LIPVNACMRRLAACDGCEIVTVEGVG-SEGAPHTVQEALVEADASQCGFCTPGMVNAMVALLERTrGEPTERDVEDAFDGNLCRCTGYRRIFDAAL 378
                 5579*********************9.7889******************************9987589**************************94 PP

>> TIGR03198  pucE: xanthine dehydrogenase E subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.0   0.0   2.8e-08   1.9e-05      24      52 ..     201     230 ..     179     249 .. 0.82
   2 !   80.3   0.3   3.1e-26   2.1e-23      57     145 ..     287     377 ..     282     382 .. 0.90

  Alignments for each domain:
  == domain 1    score: 22.0 bits;  conditional E-value: 2.8e-08
   TIGR03198  24 adll.reeltltgtkvscgigrcgacavlv 52 
                  d+l re   ltgtk sc  g cgac+vl+
  MMETSP1137-20121227|4702_1 201 RDVLaRERALLTGTKLSCREGGCGACTVLL 230
                 46663777889*****************98 PP

  == domain 2    score: 80.3 bits;  conditional E-value: 3.1e-26
   TIGR03198  57 anacllmayqaegkevvtiegiaenel.dpvqkafleeggfqcgyctpgmvvalkallrete.kpsdeeleeglsgnlcrctgyggiirav 145
                 +nac+     ++g e+vt+eg+  ++   +vq+a++e    qcg+ctpgmv a+ all+ t+ +p+++++e+++ gnlcrctgy  i+ a+
  MMETSP1137-20121227|4702_1 287 VNACMRRLAACDGCEIVTVEGVGSEGApHTVQEALVEADASQCGFCTPGMVNAMVALLERTRgEPTERDVEDAFDGNLCRCTGYRRIFDAA 377
                 79********************66654289****************************876538********************9998765 PP

>> TIGR02969  mam_aldehyde_ox: aldehyde oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.1   2.9e-07    0.0002      28      56 ..     206     234 ..     200     251 .. 0.79
   2 !   83.3   0.1   2.4e-27   1.6e-24      65     159 ..     285     379 ..     270     383 .. 0.92

  Alignments for each domain:
  == domain 1    score: 16.8 bits;  conditional E-value: 2.9e-07
   TIGR02969  28 rkklrltgtkygcggggcgactvmisryn 56 
                 r +  ltgtk  c  ggcgactv++ r  
  MMETSP1137-20121227|4702_1 206 RERALLTGTKLSCREGGCGACTVLLRRAP 234
                 667789******************99864 PP

  == domain 2    score: 83.3 bits;  conditional E-value: 2.4e-27
   TIGR02969  65 ypvnaclipicslygaavttvegigstrtrlhpvqeriaklhgtqcgfctpgmvmslyall.rnhpeptldqltdalggnlcrctgyrpiidackt 159
                  pvnac+  +++  g+ + tveg+gs     h vqe +    ++qcgfctpgmv ++ all r   ept  ++ da+ gnlcrctgyr i da  +
  MMETSP1137-20121227|4702_1 285 IPVNACMRRLAACDGCEIVTVEGVGSEG-APHTVQEALVEADASQCGFCTPGMVNAMVALLeRTRGEPTERDVEDAFDGNLCRCTGYRRIFDAALS 379
                 69***********************975.57****************************9967899**************************9765 PP

>> TIGR03193  4hydroxCoAred: 4-hydroxybenzoyl-CoA reductase, gamma subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0      0.57   3.9e+02     106     135 ..     114     145 ..     104     152 .. 0.75
   2 !   23.8   0.1     1e-08   7.2e-06      26      64 ..     206     244 ..     193     266 .. 0.86
   3 !   77.6   0.3   2.9e-25     2e-22      54     142 ..     286     375 ..     279     379 .. 0.93

  Alignments for each domain:
  == domain 1    score: -1.3 bits;  conditional E-value: 0.57
   TIGR03193 106 maaeal..lrrnpspsedeiraalagnlcrct 135
                  aa +l   rrn + s  e r+ l+  l  c 
  MMETSP1137-20121227|4702_1 114 AAAWSLerKRRNAEGSTLEQRTPLTKSLLSCD 145
                 45555522478999999999999999998885 PP

  == domain 2    score: 23.8 bits;  conditional E-value: 1e-08
   TIGR03193  26 rdvvgltgvkqgcdggecgactvlvdgeprlacltlavr 64 
                 r+ + ltg+k  c  g cgactvl+   p+++ +t   r
  MMETSP1137-20121227|4702_1 206 RERALLTGTKLSCREGGCGACTVLLRRAPVPTTATAVRR 244
                 78888*************************998886555 PP

  == domain 3    score: 77.6 bits;  conditional E-value: 2.9e-25
   TIGR03193  54 prlacltlavrvegkkvetveglaaegrlsrlqqafheklgtqcgfctpgmimaaeallrr.npspsedeiraalagnlcrctgyvkive 142
                 p+ ac+     ++g ++ tveg+ +eg  + +q+a+ e   +qcgfctpgm+ a  all r   +p+e ++  a+ gnlcrctgy +i +
  MMETSP1137-20121227|4702_1 286 PVNACMRRLAACDGCEIVTVEGVGSEGAPHTVQEALVEADASQCGFCTPGMVNAMVALLERtRGEPTERDVEDAFDGNLCRCTGYRRIFD 375
                 6789999999************************************************9762579**********************987 PP

>> TIGR03311  Se_dep_Molyb_1: selenium-dependent molybdenum hydroxylase 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   9.4e-07   0.00065      22      50 ..     205     233 ..     189     252 .. 0.80
   2 !   67.0   0.1   2.8e-22   1.9e-19      52     139 ..     287     376 ..     284     383 .. 0.90

  Alignments for each domain:
  == domain 1    score: 15.7 bits;  conditional E-value: 9.4e-07
   TIGR03311  22 lredleltsvknGcaeGacGactvlvnGk 50 
                  re   lt++k  c eG cGactvl+   
  MMETSP1137-20121227|4702_1 205 ARERALLTGTKLSCREGGCGACTVLLRRA 233
                 489999*******************9754 PP

  == domain 2    score: 67.0 bits;  conditional E-value: 2.8e-22
   TIGR03311  52 vkaclftveklaGkevttveGl.serekdvyayafakaGavqcGycipGmvisakalldkk.peptkeeikkalkgnicrctGyvkiika 139
                 v+ac+ +++   G e++tveG+ se   +    a+ +a a qcG+c+pGmv    all++   ept+ +++ a+ gn+crctGy +i +a
  MMETSP1137-20121227|4702_1 287 VNACMRRLAACDGCEIVTVEGVgSEGAPHTVQEALVEADASQCGFCTPGMVNAMVALLERTrGEPTERDVEDAFDGNLCRCTGYRRIFDA 376
                 689******************944556788899*************************986269***********************987 PP

>> TIGR03313  Se_sel_red_Mo: probable selenate reductase, molybdenum-binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.4   0.0   1.6e-09   1.1e-06      52     140 ..     287     376 ..     280     383 .. 0.91

  Alignments for each domain:
  == domain 1    score: 24.4 bits;  conditional E-value: 1.6e-09
   TIGR03313  52 vnaslliaaqlegaevrtaeslgkwnqlslvqqamvdvgvvqsgyndpaaaliltdlldrk.aapsreeiddalsglfsrdagyqqfyev 140
                 vna +   a  +g e+ t e +g+      vq+a+v+    q g+  p +   +  ll+r+  +p+  +++da+ g + r +gy++ +++
  MMETSP1137-20121227|4702_1 287 VNACMRRLAACDGCEIVTVEGVGSEGAPHTVQEALVEADASQCGFCTPGMVNAMVALLERTrGEPTERDVEDAFDGNLCRCTGYRRIFDA 376
                 578888888999***************************************9999999986279********************998875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (384 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       118  (0.0287665); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.34u 0.14s 00:00:00.48 Elapsed: 00:00:00.47
# Mc/sec: 1078.38
//
Query:       MMETSP1137-20121227|4704_1  [L=344]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.038   11.6   0.1       0.43    8.2   0.1    2.3  2  TIGR02451 anti_sig_ChrR: anti-sigma factor, putative, ChrR family


Domain annotation for each model (and alignments):
>> TIGR02451  anti_sig_ChrR: anti-sigma factor, putative, ChrR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   0.1   0.00011      0.43     141     167 ..      69      95 ..      55     118 .. 0.73
   2 ?    0.3   0.0     0.027   1.1e+02     135     159 ..     153     176 ..     139     178 .. 0.84

  Alignments for each domain:
  == domain 1    score: 8.2 bits;  conditional E-value: 0.00011
   TIGR02451 141 ipeHtHkGlElTlvlkGafsdetgeye 167
                  p+H H+G+E+  v +  + d t+  +
  MMETSP1137-20121227|4704_1  69 FPKHPHRGFETITVTRRGYVDHTDSLG 95 
                 589************999999875432 PP

  == domain 2    score: 0.3 bits;  conditional E-value: 0.027
   TIGR02451 135 ieagqeipeHtHkGlElTlvlkGaf 159
                 +  g+e+p  + +G+E Tl+  G+f
  MMETSP1137-20121227|4704_1 153 MMWGEELPRTSSQGVEATLI-AGSF 176
                 5669999***********86.6777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (344 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        32  (0.00780107); expected 82.0 (0.02)
Passed bias filter:                       31  (0.00755729); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.27u 0.17s 00:00:00.44 Elapsed: 00:00:00.36
# Mc/sec: 1261.23
//
Query:       MMETSP1137-20121227|4705_1  [L=45]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (45 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        28  (0.00682594); expected 82.0 (0.02)
Passed bias filter:                       26  (0.00633837); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.12s 00:00:00.22 Elapsed: 00:00:00.24
# Mc/sec: 247.48
//
Query:       MMETSP1137-20121227|4706_1  [L=387]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.6e-17   59.9   0.1    2.7e-14   51.1   0.0    2.2  2  TIGR02000 NifU_proper: Fe-S cluster assembly protein NifU
    1.4e-11   42.4   0.1    1.3e-09   35.9   0.0    2.3  2  TIGR03341 YhgI_GntY: IscR-regulated protein YhgI


Domain annotation for each model (and alignments):
>> TIGR02000  NifU_proper: Fe-S cluster assembly protein NifU
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.1   0.0   1.3e-17   2.7e-14     203     290 .]     215     306 ..     157     306 .. 0.68
   2 !    6.8   0.0   0.00042      0.86     224     258 ..     328     362 ..     312     366 .. 0.91

  Alignments for each domain:
  == domain 1    score: 51.1 bits;  conditional E-value: 1.3e-17
   TIGR02000 203 kkaksnatekapltnvq.riqkiekvleelrPtlqadgGdvel..ldvdgkevkvkltGacsgcsssaatlki.iqqklverlgeflkvkav 290
                 +++ ++ ++++  t ++   +++ +vl+e+rP l+adgG+v++  +d+d ++v+++l+Gac++c ss++t+k+ i+  l+e+ +   +v av
  MMETSP1137-20121227|4706_1 215 PTVAAAPAPSSTATGLElTAANVDTVLDEVRPYLIADGGNVKVarIDMDTRSVYLQLQGACGSCPSSTVTMKMgIERVLREKFADIREVAAV 306
                 2222222233345666524578999**************987633788999********************988********9998888775 PP

  == domain 2    score: 6.8 bits;  conditional E-value: 0.00042
   TIGR02000 224 iekvleelrPtlqadgGdvelldvdgkevkvkltG 258
                 +  +l ++ P +   gG ve+++vd+ +v+++ +G
  MMETSP1137-20121227|4706_1 328 VLGTLSQIMPAITGLGGSVEVVSVDDGNVQLRYQG 362
                 6678999************************9998 PP

>> TIGR03341  YhgI_GntY: IscR-regulated protein YhgI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.9   0.0   6.4e-13   1.3e-09     114     182 ..     240     309 ..     231     321 .. 0.83
   2 !    4.0   0.0     0.004       8.1     116     160 ..     333     376 ..     320     384 .. 0.78

  Alignments for each domain:
  == domain 1    score: 35.9 bits;  conditional E-value: 6.4e-13
   TIGR03341 114 lqseinPqlaahGGevslveitddevav.lkfgGGcnGcsavdvtlkegvekellekipelkgvkdatdh 182
                 +  e+ P l a GG+v++  i  d+  v l++ G c  c    vt+k g+e+ l ek++++++v  + d 
  MMETSP1137-20121227|4706_1 240 VLDEVRPYLIADGGNVKVARIDMDTRSVyLQLQGACGSCPSSTVTMKMGIERVLREKFADIREVAAVEDD 309
                 4469*****************988755549****************************988777655443 PP

  == domain 2    score: 4.0 bits;  conditional E-value: 0.004
   TIGR03341 116 seinPqlaahGGevslveitddevavlkfgGGcnGcsavdvtlke 160
                 s+i P +++ GG+v++v + d   + l++ G  +    ++++lk+
  MMETSP1137-20121227|4706_1 333 SQIMPAITGLGGSVEVVSVDDG-NVQLRYQGPPKIKFGIELALKD 376
                 799**************98665.5668888876666666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (387 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       121  (0.0294978); expected 82.0 (0.02)
Passed bias filter:                      103  (0.0251097); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.31u 0.16s 00:00:00.47 Elapsed: 00:00:00.52
# Mc/sec: 982.30
//
Query:       MMETSP1137-20121227|4709_1  [L=90]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (90 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        73  (0.0177962); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.14s 00:00:00.26 Elapsed: 00:00:00.27
# Mc/sec: 439.96
//
Query:       MMETSP1137-20121227|4710_1  [L=194]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.048   11.7   1.0        0.2    9.7   0.1    2.3  3  TIGR01690 ICE_RAQPRD: integrative conjugative element protein, RAQPRD family


Domain annotation for each model (and alignments):
>> TIGR01690  ICE_RAQPRD: integrative conjugative element protein, RAQPRD family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0      0.09   3.7e+02      23      35 ..      57      69 ..      54     109 .. 0.76
   2 ?    9.7   0.1   4.9e-05       0.2      40      76 ..     117     150 ..      97     156 .. 0.75
   3 ?   -1.3   0.0      0.13   5.4e+02      23      44 ..     162     183 ..     151     188 .. 0.65

  Alignments for each domain:
  == domain 1    score: -0.8 bits;  conditional E-value: 0.09
   TIGR01690 23 reeLaavirqLda 35
                +++L + irqL+ 
  MMETSP1137-20121227|4710_1 57 HDNLRSFIRQLNI 69
                5788899999986 PP

  == domain 2    score: 9.7 bits;  conditional E-value: 4.9e-05
   TIGR01690  40 aeraaaaakqsekeRyhfDYarlraDlkriraGiqqy 76 
                 +++++   +q + ++ + DY+++r+D++r+++ ++++
  MMETSP1137-20121227|4710_1 117 MNESS---DQPPAKKQRADYSAFRNDVARLQKNLEDF 150
                 34444...4444556689*************988875 PP

  == domain 3    score: -1.3 bits;  conditional E-value: 0.13
   TIGR01690  23 reeLaavirqLdalerlaeraa 44 
                 +++La ++  Ld      +raa
  MMETSP1137-20121227|4710_1 162 QQKLAYILSSLDETAPEGSRAA 183
                 6677777777776666656655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (194 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       140  (0.0341297); expected 82.0 (0.02)
Passed bias filter:                      113  (0.0275475); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.20u 0.14s 00:00:00.34 Elapsed: 00:00:00.33
# Mc/sec: 775.94
//
Query:       MMETSP1137-20121227|4711_1  [L=338]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (338 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        65  (0.0158459); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.19s 00:00:00.43 Elapsed: 00:00:00.56
# Mc/sec: 796.65
//
Query:       MMETSP1137-20121227|4712_1  [L=87]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (87 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        33  (0.00804486); expected 82.0 (0.02)
Passed bias filter:                       33  (0.00804486); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.12s 00:00:00.26 Elapsed: 00:00:00.31
# Mc/sec: 370.42
//
Query:       MMETSP1137-20121227|4713_1  [L=534]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00031   17.7   0.0    0.00049   17.0   0.0    1.2  1  TIGR03594 GTPase_EngA: ribosome-associated GTPase EngA
  ------ inclusion threshold ------
      0.016   12.4   0.3       0.16    9.1   0.0    2.5  3  TIGR03596 GTPase_YlqF: ribosome biogenesis GTP-binding protein YlqF
      0.021   11.7   0.3       0.06   10.2   0.0    1.9  3  TIGR02729 Obg_CgtA: Obg family GTPase CgtA
      0.033   11.8   0.0      0.067   10.8   0.0    1.5  1  TIGR00231 small_GTP: small GTP-binding protein domain


Domain annotation for each model (and alignments):
>> TIGR03594  GTPase_EngA: ribosome-associated GTPase EngA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.0   4.8e-07   0.00049     286     374 ..      60     147 ..       8     155 .. 0.85

  Alignments for each domain:
  == domain 1    score: 17.0 bits;  conditional E-value: 4.8e-07
   TIGR03594 286 gkalvivvNKwDlvkdekeleelkkeleeklkflkfapivfiSAltgkgveklleaike..vyeslskristsklnrvleeavekhppplv 374
                 +k+lv++vNK+D+  + ++l+  + +l eklk +  a iv++S l ++g++++ +a+ +  ++++++++++ sk+ +v+ ++  ++pp  +
  MMETSP1137-20121227|4713_1  60 NKPLVVAVNKVDVR-RPEDLTPPEASLLEKLKEA-GATIVYMSTLAEEGLNDVKTACCDslLAQRVEQKLQGSKVEQVIGRIRVAEPPV-S 147
                 79************.9***************998.899***************9998752367999*************9987666554.3 PP

>> TIGR03596  GTPase_YlqF: ribosome biogenesis GTP-binding protein YlqF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.0      0.12   1.2e+02     168     182 ..       2      16 ..       1      27 [. 0.83
   2 ?    9.1   0.0   0.00015      0.16      41     117 ..      53     133 ..      48     141 .. 0.78
   3 ?   -1.8   0.1      0.33   3.4e+02     223     253 ..     277     307 ..     241     323 .. 0.54

  Alignments for each domain:
  == domain 1    score: -0.3 bits;  conditional E-value: 0.12
   TIGR03596 168 lDtPGilwpkledee 182
                 lDtPG+l + le+++
  MMETSP1137-20121227|4713_1   2 LDTPGVLDKPLEERN 16 
                 8******99888765 PP

  == domain 2    score: 9.1 bits;  conditional E-value: 0.00015
   TIGR03596  41 eleelvknkprlivlnkaDladpekt....kkwlkyfeekgkkalavnakkkkkvkkilkaikkllkekkeklkakglkkk 117
                 +++ l+ nkp ++ +nk D+  pe      +++l++++e g +++++++ ++++++ +++a+ + l +++ ++k +g k +
  MMETSP1137-20121227|4713_1  53 QIRPLFVNKPLVVAVNKVDVRRPEDLtppeASLLEKLKEAGATIVYMSTLAEEGLNDVKTACCDSLLAQRVEQKLQGSKVE 133
                 6778899**************99976222258999***********************99876554444444466665554 PP

  == domain 3    score: -1.8 bits;  conditional E-value: 0.33
   TIGR03596 223 ykleeeeeeeeelleeiakkrglllkggeld 253
                  ++   + + ++l ++i kk+g+l++ ++ d
  MMETSP1137-20121227|4713_1 277 EETVAAQAQVSKLASAIRKKKGVLKATSRRD 307
                 2222333344444555555555555555544 PP

>> TIGR02729  Obg_CgtA: Obg family GTPase CgtA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   5.9e-05      0.06     268     325 ..      55     115 ..      22     119 .. 0.81
   2 ?   -2.8   0.1      0.51   5.3e+02     260     300 ..     248     288 ..     237     308 .. 0.67
   3 ?   -3.7   0.0      0.96   9.8e+02       8      18 ..     377     387 ..     348     403 .. 0.62

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 5.9e-05
   TIGR02729 268 seeLaekpelvvlnkidlleeeeleellkelkeel...ekkvlaisaltkegleellkkll 325
                 ++ +++kp +v++nk+d+ + e+l+   ++l e+l   + +++ +s+l++egl+++++++ 
  MMETSP1137-20121227|4713_1  55 RPLFVNKPLVVAVNKVDVRRPEDLTPPEASLLEKLkeaGATIVYMSTLAEEGLNDVKTACC 115
                 455889**************99998887777777756578999***********9998776 PP

  == domain 2    score: -2.8 bits;  conditional E-value: 0.51
   TIGR02729 260 iekeLkkyseeLaekpelvvlnkidlleeeeleellkelke 300
                 ie++L++ ++e +e+  l  ++ +d+ e+ee+ ++++++++
  MMETSP1137-20121227|4713_1 248 IEAKLEELEAEEEERAALAQMEAVDMEEDEETVAAQAQVSK 288
                 55667777777777777777888888777665555554444 PP

  == domain 3    score: -3.7 bits;  conditional E-value: 0.96
   TIGR02729   8 evkaGkGGnGv 18 
                 ev +G GG+ v
  MMETSP1137-20121227|4713_1 377 EVDSGAGGKVV 387
                 34444444333 PP

>> TIGR00231  small_GTP: small GTP-binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   6.5e-05     0.067     112     151 ..      60     103 ..       2     112 .. 0.82

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 6.5e-05
   TIGR00231 112 gvpiilvvnKiDlkd..dlktkvkslfaklnaep..iielsaet 151
                 ++p++++vnK+D +   dl + ++sl++kl+ +   i+  s+ +
  MMETSP1137-20121227|4713_1  60 NKPLVVAVNKVDVRRpeDLTPPEASLLEKLKEAGatIVYMSTLA 103
                 89***************************987542255555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (534 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       254  (0.061921); expected 82.0 (0.02)
Passed bias filter:                      121  (0.0294978); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.40u 0.20s 00:00:00.60 Elapsed: 00:00:00.71
# Mc/sec: 992.71
//
Query:       MMETSP1137-20121227|4714_1  [L=119]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.59    5.5  12.8       0.57    5.5   8.9    1.0  1  TIGR00927 2A1904: K+-dependent Na+/Ca+ exchanger


Domain annotation for each model (and alignments):
>> TIGR00927  2A1904: K+-dependent Na+/Ca+ exchanger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   8.9   0.00014      0.57     949    1006 ..      68     117 ..      29     119 .] 0.50

  Alignments for each domain:
  == domain 1    score: 5.5 bits;  conditional E-value: 0.00014
   TIGR00927  949 elnaenqgeakedekGvdgeggsdGGdseeeeeeeeeeeeeeeeeeeeeeeeeeneep 1006
                  +++      a++d+   d+ +g+ GG+  +  +e++e ++e ++e eee +ee  +ep
  MMETSP1137-20121227|4714_1   68 NIA------AADDDLADDDPNGAVGGEDPD--DEDDELDDELQDETEEEFDEEATDEP 117 
                  333......334444444444555553332..33333333333333333333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (119 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        73  (0.0177962); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.17u 0.15s 00:00:00.32 Elapsed: 00:00:00.25
# Mc/sec: 628.27
//
Query:       MMETSP1137-20121227|4715_1  [L=183]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (183 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        65  (0.0158459); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.14s 00:00:00.33 Elapsed: 00:00:00.40
# Mc/sec: 603.85
//
Query:       MMETSP1137-20121227|4716_1  [L=298]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (298 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       102  (0.0248659); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.17s 00:00:00.40 Elapsed: 00:00:00.39
# Mc/sec: 1008.53
//
Query:       MMETSP1137-20121227|4717_1  [L=230]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (230 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        43  (0.0104827); expected 82.0 (0.02)
Passed bias filter:                       42  (0.0102389); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.12s 00:00:00.31 Elapsed: 00:00:00.33
# Mc/sec: 919.92
//
Query:       MMETSP1137-20121227|4718_1  [L=766]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (766 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       161  (0.0392491); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.49u 0.15s 00:00:00.64 Elapsed: 00:00:00.64
# Mc/sec: 1579.74
//
Query:       MMETSP1137-20121227|4719_1  [L=390]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (390 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        94  (0.0229157); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.16s 00:00:00.47 Elapsed: 00:00:00.33
# Mc/sec: 1559.87
//
Query:       MMETSP1137-20121227|4720_1  [L=99]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (99 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        60  (0.014627); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.14s 00:00:00.27 Elapsed: 00:00:00.28
# Mc/sec: 450.58
//
Query:       MMETSP1137-20121227|4721_1  [L=544]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (544 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        82  (0.0199902); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.17s 00:00:00.52 Elapsed: 00:00:00.37
# Mc/sec: 1940.60
//
Query:       MMETSP1137-20121227|4722_1  [L=320]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (320 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       115  (0.0280351); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.17s 00:00:00.42 Elapsed: 00:00:00.33
# Mc/sec: 1279.89
//
Query:       MMETSP1137-20121227|4723_1  [L=175]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (175 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        88  (0.0214529); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.16s 00:00:00.34 Elapsed: 00:00:00.40
# Mc/sec: 577.45
//
Query:       MMETSP1137-20121227|4724_1  [L=224]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0063   13.8   0.0        1.5    5.9   0.0    2.2  2  TIGR03167 tRNA_sel_U_synt: tRNA 2-selenouridine synthase


Domain annotation for each model (and alignments):
>> TIGR03167  tRNA_sel_U_synt: tRNA 2-selenouridine synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.9   0.0   0.00037       1.5       3      26 ..     118     141 ..     116     146 .. 0.91
   2 !    5.6   0.0   0.00049         2      92     115 ..     184     207 ..     174     212 .. 0.77

  Alignments for each domain:
  == domain 1    score: 5.9 bits;  conditional E-value: 0.00037
   TIGR03167   3 kpliDvRspaEfaegalpgalnlp 26 
                 + ++D+Rs   f  g++ galn+p
  MMETSP1137-20121227|4724_1 118 HCFLDIRSADAFGAGRVRGALNVP 141
                 6789*******************9 PP

  == domain 2    score: 5.6 bits;  conditional E-value: 0.00049
   TIGR03167  92 awllkeaglevlrleGGYKayRrl 115
                 a+ll++   +++rleGG+ a+R++
  MMETSP1137-20121227|4724_1 184 AVLLRAGYANTVRLEGGFEAWREV 207
                 666655556899**********85 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (224 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        67  (0.0163335); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.20u 0.16s 00:00:00.36 Elapsed: 00:00:00.33
# Mc/sec: 895.93
//
Query:       MMETSP1137-20121227|4725_1  [L=314]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (314 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       112  (0.0273038); expected 82.0 (0.02)
Passed bias filter:                       99  (0.0241346); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.16s 00:00:00.43 Elapsed: 00:00:00.36
# Mc/sec: 1151.24
//
Query:       MMETSP1137-20121227|4727_1  [L=351]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.7e-59  196.9   0.0    9.7e-59  196.3   0.0    1.1  1  TIGR01169 rplA_bact: ribosomal protein L1
      7e-30  101.6   0.0      1e-29  101.1   0.0    1.2  1  TIGR01170 rplA_mito: ribosomal protein L1, mitochondrial


Domain annotation for each model (and alignments):
>> TIGR01169  rplA_bact: ribosomal protein L1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  196.3   0.0   4.7e-62   9.7e-59      15     201 ..      93     278 ..      79     285 .. 0.93

  Alignments for each domain:
  == domain 1    score: 196.3 bits;  conditional E-value: 4.7e-62
   TIGR01169  15 knklysleeaiellkelstakfdetvevaiklgvdprksdqqvRgsvvLPngtgksvrvlvfakgekaeeAkeaGAdlvGsedliekikkgeldfDvviatpdmmkkvgklgkvLGprgLmPnpktgtvtadvakavkelkkGkvefradkagiihvsigkvsfeeeklkenlealleaikkakPsa 201
                 + ++ +++ea++ ++      f e+ve+++ l++d  +sd+ vRg+ vLP+gtgksvrv vfa+++ a +A +aGAd+vG+edl++++++g ++fD ++atpdm++ ++k++++LGp+gLmP+pk gtv ad+a av+ +k+G +ef+ +++g++  s+gk+sf++e++ +n  a+l+ +    P a
  MMETSP1137-20121227|4727_1  93 AGRRAHIQEALKFVRAYGWRDF-EAVELSVVLNIDVSRSDERVRGTCVLPHGTGKSVRVGVFARDKAAIDALNAGADVVGAEDLVKQVQDGSINFDRCLATPDMLPLLAKVARILGPKGLMPSPKRGTVVADIAPAVALAKAGELEFKMQEHGVVTGSVGKISFSDEQIINNSLAFLDGVLGXAPGA 278
                 4567789********9999998.68*********************************************************************************************************************************************************999888865 PP

>> TIGR01170  rplA_mito: ribosomal protein L1, mitochondrial
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  101.1   0.0   4.9e-33     1e-29       2     140 .]      98     234 ..      97     234 .. 0.89

  Alignments for each domain:
  == domain 1    score: 101.1 bits;  conditional E-value: 4.9e-33
   TIGR01170   2 kvekavkylkeasis.lvspkqsvnldielkmelgkesvqgvlslPkpfakeikiavFtkgaseveearekaslvGgedLikkIkdgeiklfdyvialpdiveeLaklaklLgkkgllPsvkrgtvsddlaslieklkkG 140
                 ++++a+k+ ++     +   + sv l+i +   +  e v+g+  lP+  +k+ ++ vF++++++  +++ +a+ vG+edL+k+++dg+i+ fd ++a+pd+++ Lak+a++Lg+kgl+Ps+krgtv+ d+a+ +  +k G
  MMETSP1137-20121227|4727_1  98 HIQEALKFVRAYGWRdFEAVELSVVLNIDV--SRSDERVRGTCVLPHGTGKSVRVGVFARDKAAIDALNAGADVVGAEDLVKQVQDGSIN-FDRCLATPDMLPLLAKVARILGPKGLMPSPKRGTVVADIAPAVALAKAG 234
                 589999999999999555555555555544..44555578****************************999*******************.8***************************************999888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (351 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       100  (0.0243784); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.28u 0.16s 00:00:00.44 Elapsed: 00:00:00.41
# Mc/sec: 1129.96
//
Query:       MMETSP1137-20121227|4728_1  [L=402]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.4e-26   89.3   0.1    1.8e-21   74.4   0.1    2.2  2  TIGR00820 zip: ZIP zinc/iron transport family


Domain annotation for each model (and alignments):
>> TIGR00820  zip: ZIP zinc/iron transport family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.9   0.0   2.3e-06    0.0096      51      81 ..      87     117 ..      42     128 .. 0.76
   2 !   74.4   0.1   4.4e-25   1.8e-21      89     323 ..     155     401 ..     140     402 .] 0.71

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 2.3e-06
   TIGR00820  51 klflvvkaFaaGvilatgfvHvlpeafeals 81 
                 ++  +  +F+ G++l+ +fvH+lpea  al 
  MMETSP1137-20121227|4728_1  87 YFRSLGACFSGGLMLSAAFVHLLPEASRALD 117
                 55556679******************98884 PP

  == domain 2    score: 74.4 bits;  conditional E-value: 4.4e-25
   TIGR00820  89 ewkkfpfagfialisailtllvDllatsyyerkkekg.dagseeikvv..................dgeeeeagadkhakesaedevkeeeeeeqllrqrvvaqvLelGiivHsvviGlslGasqskdtikaLiaaLsFHqlFeGlglGgcisqae......fkakkvvilavffavttPlgiaiGlavsssydeespkAliveGlLnalsaGiLiYmaLvdllAadFlskklqsnlrlqllayialllGaglmsllakW 323
                     fpfa ++   +++ t+lv++la      + ++   +g ++  +                   d e+++     ++ +  ed+ +    +++  +  + a v  +   +Hsv+ Gl+lG+s+   +i  +++a+s H++F  ++lG+ +++a       f + +    + +fa  tP gi+iG    ++    s     ++  L a++aG  +Ym+L++++A++  +++  s  +++   ++++llG glm+ll++W
  MMETSP1137-20121227|4728_1 155 SEAGFPFAMLLCSAGLLGTMLVESLAHGAHGAHGGEHkRKGRDSPPDDgdacctklcprraspapsDSEAGR---ALDGWHAEEDQEQLLLLRAHESADALTAIVTFFAFAFHSVMEGLALGVSG---EIFEMFIAISAHKVFAAFALGTSLTRATradgtpFSNAQLGFSVALFAALTPAGIVIGRLCVQE---VSGGP--LQSALTAVAAGTFLYMSLIEIIAKELAENERASAPKVH--KVVVILLGYGLMALLGIW 401
                 5567*********************98776655544324444444443344565555555444221111111...12222222222222233444555678888999999***************...89999******************998862223335555566667789999********766544...44444..477899**********************9988877665..57888************* PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (402 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       118  (0.0287665); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.30u 0.14s 00:00:00.44 Elapsed: 00:00:00.36
# Mc/sec: 1473.88
//
Query:       MMETSP1137-20121227|4729_1  [L=434]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (434 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       145  (0.0353486); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.15s 00:00:00.44 Elapsed: 00:00:00.35
# Mc/sec: 1636.66
//
Query:       MMETSP1137-20121227|4730_1  [L=281]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.2e-28   94.9   0.0    1.2e-27   94.6   0.0    1.1  1  TIGR00231 small_GTP: small GTP-binding protein domain


Domain annotation for each model (and alignments):
>> TIGR00231  small_GTP: small GTP-binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.6   0.0   2.8e-31   1.2e-27       3     162 ..      51     208 ..      49     210 .. 0.93

  Alignments for each domain:
  == domain 1    score: 94.6 bits;  conditional E-value: 2.8e-31
   TIGR00231   3 eikivivGhvdvGKstLlnsllknkisiteskpgvtrdyvteqieedGktykvnllDTaGqedfdairrlyvreverslevvdivilvldveeglekqtkeiiheakkkgvpiilvvnKiDlkd..dlktkvkslfaklnaepiielsaetgknidklfklv 162
                 ++k+ ++G+++vGK++Ll +++++    ++  p+++ d+  +    +G ++k++++DTaGqe+f+ i+++y+r + ++l ++d+++   +++++  ++ + i+  a+ + v ++l +nK+D  +  ++  + ++ +a   + +++e sa+  +n+ ++f+++
  MMETSP1137-20121227|4730_1  51 TVKLMMIGDSGVGKTALLVRYADDA-WMESVLPTIGIDFKIKFLDLQGRRIKLQIWDTAGQERFRTITQAYYRGAMGVLLCYDVTSV-QSFNNIR-NWVRNIEGNAP-QTVNTVLIGNKCDMSSarKVAREKGEALASEFGMKFFESSARLNANVSEAFETI 208
                 689**********************.555555*****************************************************99.*******.***********.****************9777777777777777777****************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (281 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       223  (0.0543637); expected 82.0 (0.02)
Passed bias filter:                      165  (0.0402243); expected 82.0 (0.02)
Passed Vit filter:                        26  (0.00633837); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.28u 0.16s 00:00:00.44 Elapsed: 00:00:00.81
# Mc/sec: 457.89
//
Query:       MMETSP1137-20121227|4731_1  [L=327]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.1e-23   80.9   7.5    3.7e-23   80.1   5.2    1.3  1  TIGR01622 SF-CC1: splicing factor, CC1-like family
    7.6e-16   56.2   0.0    7.6e-16   56.2   0.0    2.2  2  TIGR01628 PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family
    2.2e-10   38.5   0.0    6.3e-08   30.4   0.0    2.1  2  TIGR01661 ELAV_HUD_SF: ELAV/HuD family splicing factor
    1.1e-09   35.4   0.0    1.1e-09   35.4   0.0    1.6  2  TIGR01645 half-pint: poly-U binding splicing factor, half-pint family
    1.8e-07   28.2   0.0    0.00035   17.3   0.0    2.4  2  TIGR01648 hnRNP-R-Q: hnRNP-R, Q splicing factor family
      1e-05   23.2   0.0     0.0044   14.5   0.0    2.3  2  TIGR01659 sex-lethal: sex-lethal family splicing factor
      5e-05   19.8   0.2      5e-05   19.8   0.1    4.0  4  TIGR01642 U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor
    6.1e-05   20.0   0.0        0.1    9.4   0.0    2.2  2  TIGR01649 hnRNP-L_PTB: hnRNP-L/PTB/hephaestus splicing factor family


Domain annotation for each model (and alignments):
>> TIGR01622  SF-CC1: splicing factor, CC1-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.1   5.2   7.3e-26   3.7e-23      61     313 ..      56     306 ..      31     323 .. 0.75

  Alignments for each domain:
  == domain 1    score: 80.1 bits;  conditional E-value: 7.3e-26
   TIGR01622  61 drerrsrkrreserererekerrredevr....rkrkeredrrerrekeerlke.elteeeR.DartvfvlqlalklreRdlkEFFskvgkvrdvrlikDrnSrrSkGvaYvEFydvesvqlAlaltGqkllgvPvivqaseAEKNraakaatelsgdipnsiadlkLYvGnlhfnitEqeLrqiFepFGeielvqlqkDpetGrskGyGFiqFsdaeeakeAleklNG.lelAGReikvglasDvteesdaslaskfed 313
                  r+ +++k+r+++  r+re   + e +      r++ ++ ++r  ++ke  l++ e ++ +R  +  vfv  la    e  l + F++ g+v +v ++     +r kG a+v F+  + v +Al+l+G +l g+ ++vq+ +      ++  +e+s +   + + + ++vGn+     E  Lr+ F   G+i+ v+l    ++ r     Fi F++a+ a +A  kl G + l G  ++vg++     + +  +  +++d
  MMETSP1137-20121227|4731_1  56 KRKAKEKKERKRKERRQREAALKAEAKATgllpRQSAQEPSKRASKKKE-TLPNlEQAPFKRkGKNRVFVGHLAQSTSEASLCDLFQHCGQVVEVDMLYRTSTGRFKGSAFVAFKSAKNVLAALKLNGTMLEGKQIVVQPEQHXAPESVAPHKEKSPTLA-AKSSRSVFVGNVPAGADERGLRNTFRECGPIQRVKLLPAVKGIRP---AFIDFREAKAAEDAV-KLDGkFALNGNALQVGYSMR---KAAPLSSRRSQD 306
                 3344444444433333333333222222211113455555566666654.44331444445515778***************************************************************************999999888888886555.678899******************************988877554...7********999996.79999************433...222222333443 PP

>> TIGR01628  PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   4.1      0.99   5.1e+02     443     491 ..      48      86 ..       2     113 .. 0.25
   2 !   56.2   0.0   1.5e-18   7.6e-16      82     275 ..     114     314 ..     108     322 .. 0.78

  Alignments for each domain:
  == domain 1    score: -2.7 bits;  conditional E-value: 0.99
   TIGR01628 443 pnalaqlaqqrlqaqgrrnlnnr.nrnv..lgnmnkkqqnaaskanqanvka 491
                 pn               +++++r +++   ++ ++++q++aa ka+ +++  
  MMETSP1137-20121227|4731_1  48 PNES-------------MEIQKRkAKEKkeRKRKERRQREAALKAEAKATGL 86 
                 1111.............11111111111001111112222222222222222 PP

  == domain 2    score: 56.2 bits;  conditional E-value: 1.5e-18
   TIGR01628  82 slRksGvgNifvKnLdksidnkaLfdtFskfGnilsckvat.deeGkSkgYgfvhfedeesAkeAieklNgvllndkevyvgkfikksere.........atkekkftNlYvKnlddsvtedklrelFakfGeitSaivkkdeknrkrgfafvnyekaedAkkAveelngkkitlaatgkilyVgraqkra.....eReaelkakfeel 275
                  + + G+  +fv  L +s  +++L d+F++ G+++ + +     +G+ kg +fv f+  +   +A+ klNg++l+ k+++v++ ++   +          +  +k    ++v n+++  +e  lr++F + G i  ++     k+     af+ + +a +A+ Av +l+gk      +g+ l Vg   ++a     +R +  +++++e+
  MMETSP1137-20121227|4731_1 114 FK-RKGKNRVFVGHLAQSTSEASLCDLFQHCGQVVEVDMLYrTSTGRFKGSAFVAFKSAKNVLAAL-KLNGTMLEGKQIVVQPEQHXAPESvaphkekspTLAAKSSRSVFVGNVPAGADERGLRNTFRECGPIQRVKLLPAVKGIR--PAFIDFREAKAAEDAV-KLDGKFAL---NGNALQVGYSMRKAaplssRRSQDARKRRREK 314
                 44.569*******************************98752679***********9988888776.8*************9876655554445544455445566679**************************999998888876..8**************9.68988665...78888888776665122213333333333333 PP

>> TIGR01661  ELAV_HUD_SF: ELAV/HuD family splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.4   0.0   1.2e-10   6.3e-08     212     342 ..      63     192 ..       6     201 .. 0.71
   2 !    6.4   0.0    0.0024       1.2     262     348 ..     213     295 ..     193     298 .. 0.77

  Alignments for each domain:
  == domain 1    score: 30.4 bits;  conditional E-value: 1.2e-10
   TIGR01661 212 aakfrlsaldflavlakrlqqhavaqqaaaqrasplaadgavaglaagaqiaasdgagycifvynlspdtdeavl.qlfgpfGavqsvkiirdlttnkckGygfvsmtnydeaalailslnGytlgnrvlqv 342
                  ++ r +  +  a l  + +   + ++++aq+ s  a++ +  +l + +q + +      +fv  l+  t ea l  lf   G v++v ++   +t + kG +fv+    ++ +la l lnG+ l ++ + v
  MMETSP1137-20121227|4731_1  63 KERKRKERRQREAALKAEAKATGLLPRQSAQEPSKRASKKKE-TLPNLEQAPFKRKGKNRVFVGHLAQSTSEASLcDLFQHCGQVVEVDMLYRTSTGRFKGSAFVAFKSAKN-VLAALKLNGTMLEGKQIVV 192
                 333333333444444344444455556666777777776655.78777888887777889**********999988******************************998766.556667******9997655 PP

  == domain 2    score: 6.4 bits;  conditional E-value: 0.0024
   TIGR01661 262 iaasdgagycifvynlspdtdeavl.qlfgpfGavqsvkiirdlttnkckGygfvsmtnydeaalailslnGytlgnrvlqvsfktnk 348
                 +aa   +   +fv n+ + +de  l   f + G +q vk++  +   k    +f+   + + a  a++    + l +  lqv +   k
  MMETSP1137-20121227|4731_1 213 LAA--KSSRSVFVGNVPAGADERGLrNTFRECGPIQRVKLLPAV---KGIRPAFIDFREAKAAEDAVKLDGKFALNGNALQVGYSMRK 295
                 444..345789***********999789************9888...33445888888888888888755557899999999877666 PP

>> TIGR01645  half-pint: poly-U binding splicing factor, half-pint family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.4      0.36   1.8e+02     436     473 ..      32      68 ..       5      92 .. 0.54
   2 !   35.4   0.0   2.2e-12   1.1e-09     108     284 ..     121     299 ..     119     307 .. 0.86

  Alignments for each domain:
  == domain 1    score: -1.6 bits;  conditional E-value: 0.36
   TIGR01645 436 asslalaaaakakeaaaalllenkkkkkekeeeelqpk 473
                  ss  la+   + +    + + +++k+k ke++e ++k
  MMETSP1137-20121227|4731_1  32 QSSDSLANRKLSSNGV-PNESMEIQKRKAKEKKERKRK 68 
                 4444444443333322.233333344444444443333 PP

  == domain 2    score: 35.4 bits;  conditional E-value: 2.2e-12
   TIGR01645 108 rv.vGsisfelkedtlrrafdPfGPiksinmsWdpvtqkhkgfafveevPeaallaleqmngallGGrnlkvg.....rPsnlpqaqpiidevqeeakkfnri.vasvhpdlseedlksvfeafGeivkcklaraptlrkhkGfGflefenlqsqseaiasmnlfdlGGqllrvGkavtPPdal 284
                 rv vG +     e  l   f+  G +  ++m + + t++ kg afv        la  ++ng++l G+ + v+      P+ ++  ++   +++  ak+   + v  v     e  l+  f   G+i++ kl   p+ ++ +   f++f ++++ ++a+     f l G  l+vG ++    +l
  MMETSP1137-20121227|4731_1 121 RVfVGHLAQSTSEASLCDLFQHCGQVVEVDMLYRTSTGRFKGSAFVAFKSAKNVLAALKLNGTMLEGKQIVVQpeqhxAPESVAPHKEKSPTLA--AKSSRSVfVGNVPAGADERGLRNTFRECGPIQRVKLL--PAVKGIRP-AFIDFREAKAAEDAVKLDGKFALNGNALQVGYSMRKAAPL 299
                 777999999999999********************************9999999****************998666666665554444444443..44444455************************99986..77888898.9******************************998777766 PP

>> TIGR01648  hnRNP-R-Q: hnRNP-R, Q splicing factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.0   6.8e-07   0.00035      18     117 ..      72     179 ..      54     193 .. 0.72
   2 !    8.7   0.0   0.00028      0.14      60     135 ..     220     292 ..     205     313 .. 0.86

  Alignments for each domain:
  == domain 1    score: 17.3 bits;  conditional E-value: 6.8e-07
   TIGR01648  18 pdeaalkalvertGy...tlvqenGqr..kyGGPPPgyegaq.PerG.cevfvGkiPrdlyedelvPlfekvGkiyelrlmmd.ldGknrGyafvtfcnkeeakeavk 117
                 + eaalka  + tG       qe  +r  k     P+ e a+   +G   vfvG + +   e  l  lf++ G++ e+ ++     G+ +G afv f   ++   a+k
  MMETSP1137-20121227|4731_1  72 QREAALKAEAKATGLlprQSAQEPSKRasKKKETLPNLEQAPfKRKGkNRVFVGHLAQSTSEASLCDLFQHCGQVVEVDMLYRtSTGRFKGSAFVAFKSAKNVLAALK 179
                 66777777777777622123334444433444455665555404455246******************************999688***********98877777776 PP

  == domain 2    score: 8.7 bits;  conditional E-value: 0.00028
   TIGR01648  60 evfvGkiPrdlyedelvPlfekvGkiyelrlmmdldGknrGyafvtfcnkeeakeavkelnnyeirpGrllGvcis 135
                  vfvG +P    e  l   f + G+i  ++l+  ++G     af+ f + ++a++avk   ++ + +G  l v  s
  MMETSP1137-20121227|4731_1 220 SVFVGNVPAGADERGLRNTFRECGPIQRVKLLPAVKGIR--PAFIDFREAKAAEDAVKLDGKFAL-NGNALQVGYS 292
                 69******************************9999975..59**************97666654.6777777666 PP

>> TIGR01659  sex-lethal: sex-lethal family splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.0   8.5e-06    0.0044     196     262 ..     122     187 ..     114     203 .. 0.76
   2 !    6.3   0.0    0.0027       1.4     106     183 ..     217     291 ..     204     298 .. 0.80

  Alignments for each domain:
  == domain 1    score: 14.5 bits;  conditional E-value: 8.5e-06
   TIGR01659 196 lyvtnlprtitddqldtifgkygsivqknilrdkltgkprgvafvrfnkreeaqeaisalnnvipeg 262
                 ++v  l+++ ++  l  +f + g++v+ ++l    tg+ +g afv f   ++   a+  ln  + eg
  MMETSP1137-20121227|4731_1 122 VFVGHLAQSTSEASLCDLFQHCGQVVEVDMLYRTSTGRFKGSAFVAFKSAKNVLAAL-KLNGTMLEG 187
                 678888888888889899999999999999999999999999999987665554444.355555555 PP

  == domain 2    score: 6.3 bits;  conditional E-value: 0.0027
   TIGR01659 106 sgtnlivnylpqdmtdrelyalfrtigpintcrimrdyktgysfgyafvdfaseadsqraikslngitvrnkrlkvsy 183
                 s+  + v  +p    +r l   fr  gpi+  +++   k       af+df     +  a+k     ++    l+v y
  MMETSP1137-20121227|4731_1 217 SSRSVFVGNVPAGADERGLRNTFRECGPIQRVKLLPAVKG---IRPAFIDFREAKAAEDAVKLDGKFALNGNALQVGY 291
                 5667788899************************999885...56799999988888888885555555556666666 PP

>> TIGR01642  U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.1   6.3       1.7   8.8e+02      41      81 ..      55      98 ..      30     117 .. 0.55
   2 !   19.8   0.1   9.7e-08     5e-05     294     372 ..     117     194 ..      95     216 .. 0.87
   3 !    4.3   0.0    0.0048       2.4     172     255 ..     214     289 ..     194     298 .. 0.64
   4 ?   -6.6   4.7         8   4.1e+03      34      50 ..     302     318 ..     291     321 .. 0.50

  Alignments for each domain:
  == domain 1    score: -4.1 bits;  conditional E-value: 1.7
   TIGR01642 41 drrrsrrkdsRdRdrrrydsrsissleeds...rrrSRdrirrr 81
                ++r+++ k +R+R++rr+++   + + +      r+S +++ +r
  MMETSP1137-20121227|4731_1 55 QKRKAKEKKERKRKERRQREAALKAEAKATgllPRQSAQEPSKR 98
                34445555555555555555554444443333333333332222 PP

  == domain 2    score: 19.8 bits;  conditional E-value: 9.7e-08
   TIGR01642 294 dsedklyignLPldlkddqvkeLLesFGdLkaFnliKdlatGlsKGyaFceykdssvtdlAiaaLnGiklgdkkLnvkr 372
                  +++++++g L +   +  + +L +  G++   +++  + tG  KG aF+ +k +    lA   LnG  l +k++ v+ 
  MMETSP1137-20121227|4731_1 117 KGKNRVFVGHLAQSTSEASLCDLFQHCGQVVEVDMLYRTSTGRFKGSAFVAFKSAKN-VLAALKLNGTMLEGKQIVVQP 194
                 689*************************************************97665.577888**********99985 PP

  == domain 3    score: 4.3 bits;  conditional E-value: 0.0048
   TIGR01642 172 atrkaRrlyvgniPpeakeeavvdFfndlllavgkdkaedgkavkaviinkdkkFaflEfrtveeatlalaldsi.iyenvslki 255
                 a +  R ++vgn+P +a e  + + f +          ++ + vk     k  + af++fr  + a  a++ld+   +++ +l++
  MMETSP1137-20121227|4731_1 214 AAKSSRSVFVGNVPAGADERGLRNTFRE---------CGPIQRVKLLPAVKGIRPAFIDFREAKAAEDAVKLDGKfALNGNALQV 289
                 5677888888888888888776554433.........233455555555566666777777777777777777652344455555 PP

  == domain 4    score: -6.6 bits;  conditional E-value: 8
   TIGR01642  34 dRdRdrrdrrrsrrkds 50 
                  R+ d r+rrr +r+d 
  MMETSP1137-20121227|4731_1 302 RRSQDARKRRREKRDDA 318
                 23333333333344433 PP

>> TIGR01649  hnRNP-L_PTB: hnRNP-L/PTB/hephaestus splicing factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.6   0.1   0.00034      0.18     286     375 ..     108     199 ..      27     216 .. 0.65
   2 !    9.4   0.0    0.0002       0.1       2      79 ..     218     296 ..     217     316 .. 0.70

  Alignments for each domain:
  == domain 1    score: 8.6 bits;  conditional E-value: 0.00034
   TIGR01649 286 aisstapaasglgsVllvsnLeeekvtpdalFnlfgvYGdvervkilknk.....ketalvemadpqqaqlalthLdkvklfgkklrvavSkqea 375
                 ++++  ++ ++ ++ ++v  L ++     +l  lf   G+v  v +l+       k++a+v +   +++  al+ L+++ l gk++ v + ++ a
  MMETSP1137-20121227|4731_1 108 NLEQAPFK-RKGKNRVFVGHLAQSTS-EASLCDLFQHCGQVVEVDMLYRTstgrfKGSAFVAFKSAKNVLAALK-LNGTMLEGKQIVVQPEQHXA 199
                 33333333.44445567777777654.45678888888888888888754333336788888888777766664.88888888888888887754 PP

  == domain 2    score: 9.4 bits;  conditional E-value: 0.0002
   TIGR01649   2 SkVvHvRnlpeevveadlvelliefGkvsyvlvlk...gkrqAlvEfedeesAkalVnfatsvpiqirGrtvfvqyStske 79 
                 S+ v v n+p    e  l +   e G++  v +l+   g r A+++f + ++A+++V+   + +  ++G+ + v yS  k 
  MMETSP1137-20121227|4731_1 218 SRSVFVGNVPAGADERGLRNTFRECGPIQRVKLLPavkGIRPAFIDFREAKAAEDAVKL--DGKFALNGNALQVGYSMRKA 296
                 66677777888888888888888888888777764211567788888888888888876..45566777777777777664 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (327 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       202  (0.0492443); expected 82.0 (0.02)
Passed bias filter:                      125  (0.0304729); expected 82.0 (0.02)
Passed Vit filter:                        22  (0.00536324); expected 4.1 (0.001)
Passed Fwd filter:                         8  (0.00195027); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.50u 0.11s 00:00:00.61 Elapsed: 00:00:00.66
# Mc/sec: 653.95
//
Query:       MMETSP1137-20121227|4732_1  [L=797]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (797 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       183  (0.0446124); expected 82.0 (0.02)
Passed bias filter:                      122  (0.0297416); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.52u 0.14s 00:00:00.66 Elapsed: 00:00:00.74
# Mc/sec: 1421.56
//
Query:       MMETSP1137-20121227|4733_1  [L=277]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.3e-26   89.2   0.0      7e-26   88.8   0.0    1.1  1  TIGR00120 ArgJ: glutamate N-acetyltransferase/amino-acid acetyltransferase


Domain annotation for each model (and alignments):
>> TIGR00120  ArgJ: glutamate N-acetyltransferase/amino-acid acetyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.8   0.0   1.7e-29     7e-26      16     178 ..     110     268 ..      98     271 .. 0.89

  Alignments for each domain:
  == domain 1    score: 88.8 bits;  conditional E-value: 1.7e-29
   TIGR00120  16 ikeGkkkssldlgliisereava.aavfttnkvraapvkvskevlkdkasikaivvnsgnanavtGeqGlkDakemarlvaeklgiee..eevlvastGviGrrldmekikkkiekvieelkessnssekvakailttDtvpkevavelelegkkvriggvakGaG 178
                  ++G  + ++ l+li++++++++ aavft+n +   pv+v k+++++ ++++a++vn    n +   +G+ D +  ++ +a  l++ +   +vl +stGviG +l + ++++ + +++++l+ +  s+  +a+ i+ttD++pk  a+ +       ri g+akGaG
  MMETSP1137-20121227|4733_1 110 AATGT-RVKMRLTLIVADKPSSSfAAVFTKNAFCGSPVTVGKRRMRESPTLQALLVNNKVSNVCAAGDGVADSEALCEALATALELPDgaASVLPSSTGVIGWKLPVPEMRAAMPEAVASLQAG--SALPAAQGIMTTDRYPKLRAASVC----GGRIVGIAKGAG 268
                 45566.45899******9987544**********************************************************9998752268999*****************************..8899**************888554....45899******9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (277 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        74  (0.01804); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.23u 0.16s 00:00:00.39 Elapsed: 00:00:00.44
# Mc/sec: 830.93
//
Query:       MMETSP1137-20121227|4734_1  [L=879]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.3e-50  168.7   0.0      2e-21   74.0   0.0    4.1  4  TIGR03719 ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family
    5.5e-38  129.0   0.0    3.4e-10   37.3   0.0    4.2  4  TIGR02857 CydD: thiol reductant ABC exporter, CydD subunit
    1.5e-37  127.1   0.0      2e-13   48.0   0.0    4.2  4  TIGR03873 F420-0_ABC_ATP: proposed F420-0 ABC transporter, ATP-binding protein
    7.9e-36  121.6   0.1      8e-12   42.4   0.0    4.2  4  TIGR02868 CydC: thiol reductant ABC exporter, CydC subunit
    1.3e-35  120.6   0.1      2e-12   44.9   0.0    4.2  4  TIGR03608 L_ocin_972_ABC: putative bacteriocin export ABC transporter, lactococcin 972 group
    3.3e-34  116.3   0.0    2.7e-13   47.9   0.0    4.2  4  TIGR02673 FtsE: cell division ATP-binding protein FtsE
    5.6e-34  115.3   0.2    2.3e-11   40.5   0.0    4.2  4  TIGR03375 type_I_sec_LssB: type I secretion system ATPase
    1.6e-32  110.3   0.0    1.7e-10   38.5   0.0    4.3  4  TIGR01166 cbiO: cobalt ABC transporter, ATP-binding protein
    7.3e-32  108.7   0.0    4.5e-13   47.2   0.0    4.2  4  TIGR03740 galliderm_ABC: lantibiotic protection ABC transporter, ATP-binding subunit
    4.7e-31  106.0   0.0    3.3e-11   41.2   0.0    4.2  4  TIGR00960 3a0501s02: type II secretory pathway family protein
      6e-31  105.7   0.0    2.6e-13   47.8   0.0    4.3  4  TIGR01188 drrA: daunorubicin resistance ABC transporter, ATP-binding protein
    6.3e-31  105.5   0.2    4.3e-11   40.5   0.0    4.2  4  TIGR03864 PQQ_ABC_ATP: ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system
    2.4e-30  103.5   0.0    6.1e-13   46.5   0.0    4.3  4  TIGR00972 3a0107s01c2: phosphate ABC transporter, ATP-binding protein
    3.6e-30  103.0   0.0      3e-09   34.5   0.0    4.2  4  TIGR02315 ABC_phnC: phosphonate ABC transporter, ATP-binding protein
      7e-30  102.0   0.0    2.9e-10   37.9   0.0    4.2  4  TIGR02211 LolD_lipo_ex: lipoprotein releasing system, ATP-binding protein
    7.5e-29   98.6   0.0      2e-08   31.8   0.0    4.7  4  TIGR03410 urea_trans_UrtE: urea ABC transporter, ATP-binding protein UrtE
    4.5e-28   96.0   0.0    8.3e-09   32.3   0.0    4.1  4  TIGR03797 NHLM_micro_ABC2: NHLM bacteriocin system ABC transporter, ATP-binding protein
    1.5e-27   94.4   1.0    8.8e-12   42.9   0.3    4.3  3  TIGR01189 ccmA: heme ABC exporter, ATP-binding protein CcmA
    4.3e-27   93.2   0.2    3.4e-11   41.1   0.0    4.3  4  TIGR03411 urea_trans_UrtD: urea ABC transporter, ATP-binding protein UrtD
    1.2e-26   91.2   0.0    4.2e-07   26.7   0.0    4.1  4  TIGR01842 type_I_sec_PrtD: type I secretion system ATPase
    2.4e-26   90.5   0.0    7.4e-11   39.9   0.0    4.3  4  TIGR02982 heterocyst_DevA: ABC exporter ATP-binding subunit, DevA family
    2.7e-26   90.4   0.0    5.7e-11   40.2   0.0    4.4  4  TIGR00968 3a0106s01: sulfate ABC transporter, ATP-binding protein
    3.9e-25   86.0   0.0      2e-08   30.7   0.0    4.1  4  TIGR03796 NHLM_micro_ABC1: NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein
    6.8e-25   85.5   0.0    2.7e-09   34.3   0.0    4.2  4  TIGR01288 nodI: nodulation ABC transporter NodI
    1.6e-24   84.7   0.0    1.2e-08   32.6   0.0    4.1  4  TIGR03522 GldA_ABC_ATP: gliding motility-associated ABC transporter ATP-binding subunit GldA
    5.3e-24   82.7   0.6    6.7e-12   42.9   0.0    4.2  4  TIGR01187 potA: polyamine ABC transporter, ATP-binding protein
    1.2e-23   81.3   0.0    2.5e-08   30.7   0.0    4.2  4  TIGR03269 met_CoM_red_A2: methyl coenzyme M reductase system, component A2
    7.5e-23   78.8   0.0    4.8e-07   26.6   0.0    4.4  4  TIGR02204 MsbA_rel: ABC transporter, permease/ATP-binding protein
    1.2e-22   78.5   0.0    3.9e-08   30.9   0.0    4.2  4  TIGR02769 nickel_nikE: nickel import ATP-binding protein NikE
    1.7e-22   77.4   0.0    3.2e-07   27.0   0.0    4.1  4  TIGR02203 MsbA_lipidA: lipid A export permease/ATP-binding protein MsbA
    1.8e-22   77.8   0.0    1.8e-08   32.0   0.0    4.3  4  TIGR02324 CP_lyasePhnL: phosphonate C-P lyase system protein PhnL
    5.7e-22   76.0   0.0    2.4e-08   31.3   0.0    4.2  4  TIGR03005 ectoine_ehuA: ectoine/hydroxyectoine ABC transporter, ATP-binding protein EhuA
    8.5e-22   75.6   0.4    1.1e-06   26.1   0.0    4.4  4  TIGR01978 sufC: FeS assembly ATPase SufC
    8.5e-22   75.8   0.1    1.5e-08   32.4   0.0    4.2  4  TIGR03771 anch_rpt_ABC: anchored repeat-type ABC transporter, ATP-binding subunit
    2.5e-21   73.4   0.0    1.8e-07   27.6   0.0    3.5  4  TIGR00958 3a01208: antigen peptide transporter 2
    3.5e-21   73.5   0.1    6.3e-11   39.9   0.0    4.4  4  TIGR02770 nickel_nikD: nickel import ATP-binding protein NikD
    6.9e-21   72.3   0.0      1e-07   28.8   0.0    4.1  4  TIGR00955 3a01204: pigment precursor permease
    2.2e-20   71.0   0.0    5.7e-06   23.9   0.0    4.5  4  TIGR01277 thiQ: thiamine ABC transporter, ATP-binding protein
      4e-20   70.2   0.0    2.4e-09   34.7   0.0    4.2  4  TIGR03265 PhnT2: putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein
    7.5e-20   68.6   0.0    1.1e-05   21.7   0.0    4.1  4  TIGR01846 type_I_sec_HlyB: type I secretion system ATPase
    8.7e-20   68.6   0.0    2.8e-06   23.9   0.0    4.1  4  TIGR01193 bacteriocin_ABC: ABC-type bacteriocin transporter
    2.3e-19   67.8   0.2    6.1e-08   30.3   0.0    4.2  4  TIGR01184 ntrCD: nitrate ABC transporter, ATP-binding proteins C and D
    3.5e-19   67.1   0.1    1.8e-07   28.6   0.0    4.3  4  TIGR02142 modC_ABC: molybdate ABC transporter, ATP-binding protein
    5.9e-19   66.2   0.2    1.5e-09   35.3   0.0    4.2  4  TIGR01186 proV: glycine betaine/L-proline transport ATP binding subunit
    7.8e-19   65.7   0.1    1.3e-05   22.2   0.0    4.2  4  TIGR03258 PhnT: 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT
    2.4e-18   63.7   0.0      1e-05   22.0   0.0    4.2  4  TIGR02633 xylG: D-xylose ABC transporter, ATP-binding protein
    1.3e-17   61.7   0.0    8.7e-10   35.9   0.0    4.0  4  TIGR02314 ABC_MetN: D-methionine ABC transporter, ATP-binding protein
    1.9e-13   48.0   0.0    7.6e-08   29.5   0.0    4.2  4  TIGR03415 ABC_choXWV_ATP: choline ABC transporter, ATP-binding protein
    1.4e-12   45.5   0.1      0.019   12.3   0.0    4.2  4  TIGR02323 CP_lyasePhnK: phosphonate C-P lyase system protein PhnK
    2.3e-12   43.0   0.0    0.00067   15.0   0.0    4.1  4  TIGR01271 CFTR_protein: cystic fibrosis transmembrane conductor regulator (CFTR)
    4.4e-12   43.0   0.0     0.0044   13.3   0.0    4.0  4  TIGR00954 3a01203: peroxysomal long chain fatty acyl transporter
    4.7e-11   39.8   0.0     0.0069   12.8   0.0    4.0  4  TIGR01192 chvA: glucan exporter ATP-binding protein
    9.4e-11   37.9   0.0    5.5e-05   18.7   0.0    3.5  3  TIGR00956 3a01205: pleiotropic drug resistance family protein
    8.9e-10   33.9   0.0    6.3e-06   21.1   0.0    3.8  4  TIGR01257 rim_protein: rim ABC transporter
    2.6e-09   34.0   0.0    2.1e-05   21.1   0.0    3.9  4  TIGR01194 cyc_pep_trnsptr: cyclic peptide transporter
    1.9e-07   26.7   0.0      0.081    8.1   0.0    3.7  4  TIGR00957 MRP_assoc_pro: multi drug resistance-associated protein (MRP)
    4.1e-06   23.1   0.0      0.029   10.3   0.0    4.0  4  TIGR00630 uvra: excinuclease ABC subunit A
      6e-05   19.3   0.6       0.11    8.4   0.0    2.6  3  TIGR00929 VirB4_CagE: type IV secretion/conjugal transfer ATPase, VirB4 family
    0.00033   17.8   0.0      0.023   11.7   0.0    2.3  2  TIGR03819 heli_sec_ATPase: helicase/secretion neighborhood ATPase
    0.00046   17.8   0.1      0.059   11.0   0.0    2.4  2  TIGR00231 small_GTP: small GTP-binding protein domain
     0.0032   15.3   0.6       0.01   13.7   0.0    2.1  1  TIGR03499 FlhF: flagellar biosynthesis protein FlhF
     0.0033   13.6   0.0       0.71    5.9   0.0    2.2  2  TIGR03925 T7SS_EccC_b: type VII secretion protein EccCb
     0.0053   13.6   0.0      0.091    9.6   0.0    2.2  2  TIGR02788 VirB11: P-type DNA transfer ATPase VirB11
     0.0074   13.3   0.1       0.44    7.4   0.0    2.4  2  TIGR00750 lao: LAO/AO transport system ATPase
     0.0078   11.7   0.3       0.78    5.1   0.0    2.9  4  TIGR00606 rad50: rad50
  ------ inclusion threshold ------
       0.01   12.4   0.1       0.57    6.6   0.0    2.4  2  TIGR02546 III_secr_ATP: type III secretion apparatus H+-transporting two-sector ATPase
      0.012   13.4   0.2        1.3    6.8   0.0    2.8  2  TIGR00176 mobB: molybdopterin-guanine dinucleotide biosynthesis protein B
      0.021   11.8   0.4        1.4    5.7   0.0    2.5  2  TIGR00611 recf: DNA replication and repair protein RecF
      0.023   12.3   0.8        2.1    6.0   0.0    2.7  2  TIGR00152 TIGR00152: dephospho-CoA kinase
      0.031   11.3   0.0       0.21    8.6   0.0    2.1  2  TIGR01526 nadR_NMN_Atrans: nicotinamide-nucleotide adenylyltransferase
      0.042   11.0   0.3       0.93    6.6   0.0    2.5  2  TIGR00436 era: GTP-binding protein Era


Domain annotation for each model (and alignments):
>> TIGR03719  ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   0.0   2.9e-07   1.7e-05     272     371 ..     223     322 ..     192     327 .. 0.81
   2 !   74.0   0.0   3.5e-23     2e-21     131     235 ..     354     461 ..     339     484 .. 0.89
   3 !   25.9   0.0   1.3e-08   7.5e-07     322     393 ..     581     656 ..     573     692 .. 0.59
   4 !   41.7   0.0   2.1e-13   1.2e-11     158     231 ..     795     865 ..     789     876 .. 0.89

  Alignments for each domain:
  == domain 1    score: 21.4 bits;  conditional E-value: 2.9e-07
   TIGR03719 272 leWvrsspkarqakskarlaryeelaseesekk..eetaeivippgerlGdkvievenlskafgdklliddlsfklpkggivGviGpnGaGkstlfklitgk 371
                  eW+ ++ ++    + a +a+  + a e +++   ee++++  ++g++  d  ++++n+  af  ++l+ + +++  +g   G+iG nG+Gk+tl++ ++ k
  MMETSP1137-20121227|4734_1 223 TEWISAEIRGVVEVDDAAIAAVADSAVEYYKQMlpEESKQMLAKSGDK--DFALDMQNIILAFAGRVLLRKADVRFERGHRYGLIGQNGTGKTTLLNRLAAK 322
                 678888888888888888887776655544443115566666666665..8899*****************************************9988776 PP

  == domain 2    score: 74.0 bits;  conditional E-value: 3.5e-23
   TIGR03719 131 idaadawdldskleiamdalrlpee..dakveklsGGekrrvalcrlllekPdlllldePtnhldaesvaWlekflkeykG.tvvavthdryfldnvaeWileldrGe 235
                 ++a ++ ++ds +e ++  ++ pee   + v++lsGG k r++++  ++++P+lllldePtnhld e+++Wl ++l + kG t+ +v hd  f+d+v+  i   d G 
  MMETSP1137-20121227|4734_1 354 MKAPEGRQVDSIVEEVLSRVNFPEEfkSTYVNSLSGGWKMRMSVAISMMHEPELLLLDEPTNHLDREAIDWLTNHLLSLKGvTIAVVSHDYDFIDEVCTDITHYDNGG 461
                 6778899999*************9633678***************************************************4455679*************9999985 PP

  == domain 3    score: 25.9 bits;  conditional E-value: 1.3e-08
   TIGR03719 322 vievenlskaf..gdklliddlsfklpkggivGviGpnGaGkstlfklitgkekpdsG..elkiGetvklayvdqs 393
                 v+ ++++s ++   d+ ++++++ +l  g+   ++G nG+Gkst++kl++g+ +p++G  +    ++++l+yv q+
  MMETSP1137-20121227|4734_1 581 VMTLKDVSFKYpeTDRYILNKVEATLTLGSRAVIVGGNGSGKSTFLKLLIGDLEPEEGigAAWKHHALRLSYVAQQ 656
                 4445555555532355555666666665555556666666666666666665555554112233445555555443 PP

  == domain 4    score: 41.7 bits;  conditional E-value: 2.1e-13
   TIGR03719 158 kveklsGGekrrvalcrlllekPdlllldePtnhldaesvaWlekflkeykGtvvavthdryfldnvae..Wilel 231
                 k+ ++sGG+++r+ +c  + +kP ++ ldePtn+ld +sva      k++kG+vv v  +  f+ ++++  W++e 
  MMETSP1137-20121227|4734_1 795 KIRQMSGGQRQRLVICAAFWSKPHVIALDEPTNYLDNDSVA-----XKDFKGAVVTVSENEAFVAEISNekWVVED 865
                 6899************************************8.....589****************99843488874 PP

>> TIGR02857  CydD: thiol reductant ABC exporter, CydD subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.1   0.0   1.2e-07   6.9e-06     295     369 ..     246     320 ..     236     323 .. 0.74
   2 !   37.3   0.0   5.9e-12   3.4e-10     457     520 ..     385     447 ..     381     454 .. 0.93
   3 !   32.1   0.0   2.2e-10   1.2e-08     319     378 ..     579     639 ..     549     677 .. 0.84
   4 !   30.8   0.0   5.6e-10   3.3e-08     416     495 ..     754     835 ..     744     862 .. 0.76

  Alignments for each domain:
  == domain 1    score: 23.1 bits;  conditional E-value: 1.2e-07
   TIGR02857 295 ealvevldaeeqpeaekapltaaass..slelenvsvayegrkpalkevsltvepgelvalvGaSGaGKstllklll 369
                 ++ ve  + +  pe++k+ l++  ++  +l ++n+ +a+ gr   l++ ++++e g++++l+G+ G GK+tll+ l+
  MMETSP1137-20121227|4734_1 246 DSAVEYYK-QMLPEESKQMLAKSGDKdfALDMQNIILAFAGRV-LLRKADVRFERGHRYGLIGQNGTGKTTLLNRLA 320
                 23333333.5555555554444333356***************.*****************************9886 PP

  == domain 2    score: 37.3 bits;  conditional E-value: 5.9e-12
   TIGR02857 457 agLSgGqrqRlaLArallrdapllllDEPtahLDaeteaevlealrelaegrtvllvaHrlala 520
                 + LSgG + R+++A  ++++ +llllDEPt hLD+e+   ++++l + ++g t+ +v+H+   +
  MMETSP1137-20121227|4734_1 385 NSLSGGWKMRMSVAISMMHEPELLLLDEPTNHLDREAIDWLTNHLLS-LKGVTIAVVSHDYDFI 447
                 57*******************************************99.699********98766 PP

  == domain 3    score: 32.1 bits;  conditional E-value: 2.2e-10
   TIGR02857 319 ssslelenvsvayegrk.palkevsltvepgelvalvGaSGaGKstllklllgfvepteGa 378
                 +  ++l++vs++y++++  +l++v++t+  g+++++vG  G+GKst lkll g +ep+eG 
  MMETSP1137-20121227|4734_1 579 KPVMTLKDVSFKYPETDrYILNKVEATLTLGSRAVIVGGNGSGKSTFLKLLIGDLEPEEGI 639
                 447899********99999***************************************995 PP

  == domain 4    score: 30.8 bits;  conditional E-value: 5.6e-10
   TIGR02857 416 irlarkdaseaevkealeragldelvkalpq.gleteiG.ergagLSgGqrqRlaLArallrdapllllDEPtahLDaetea 495
                 i+ ++++a++ e   a++    +e++k+l + g+++ +   + +++SgGqrqRl +  a+ ++ +++ lDEPt  LD+++ a
  MMETSP1137-20121227|4734_1 754 IKNYDQKAQALESGMAIRPITEAEVLKHLADfGIDQTLAfGKIRQMSGGQRQRLVICAAFWSKPHVIALDEPTNYLDNDSVA 835
                 556666777777777777766666666665437776665235689********************************99754 PP

>> TIGR03873  F420-0_ABC_ATP: proposed F420-0 ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0   1.5e-05   0.00088       3      48 ..     275     320 ..     273     326 .. 0.87
   2 !   48.0   0.0   3.5e-15     2e-13     110     213 ..     358     460 ..     346     465 .. 0.88
   3 !   28.4   0.0   3.4e-09     2e-07      12      56 ..     594     638 ..     582     660 .. 0.89
   4 !   28.7   0.0   2.7e-09   1.6e-07     120     169 ..     780     830 ..     764     850 .. 0.84

  Alignments for each domain:
  == domain 1    score: 16.4 bits;  conditional E-value: 1.5e-05
   TIGR03873   3 rlsrvsvraggrlivddvdvtaPaGaltgllGPnGsGkstllrlla 48 
                  ++++ +   gr+++   dv +  G   gl+G nG+Gk+tll+ la
  MMETSP1137-20121227|4734_1 275 DMQNIILAFAGRVLLRKADVRFERGHRYGLIGQNGTGKTTLLNRLA 320
                 56667777889*******************************7665 PP

  == domain 2    score: 48.0 bits;  conditional E-value: 3.5e-15
   TIGR03873 110 dsdedaevvdralarvel.ssladrdlstlsGGerqrvhlaralaqePklllldePtnhldvsaqlellalvrelaaegvtvvvalhdlnlaasvcdhvvvldgG 213
                 +  + +++v+++l+rv+  +++ +  ++ lsGG + r+ +a ++  eP+lllldePtnhld +a   l + + +l  +gvt+ v  hd ++  +vc ++   d+G
  MMETSP1137-20121227|4734_1 358 EGRQVDSIVEEVLSRVNFpEEFKSTYVNSLSGGWKMRMSVAISMMHEPELLLLDEPTNHLDREAIDWLTNHLLSL--KGVTIAVVSHDYDFIDEVCTDITHYDNG 460
                 555667899******998578999*************************************99987777888888..9******************998777665 PP

  == domain 3    score: 28.4 bits;  conditional E-value: 3.4e-09
   TIGR03873  12 ggrlivddvdvtaPaGaltgllGPnGsGkstllrllaGllapdaG 56 
                   r i++ v++t   G+ + ++G nGsGkst+l+ll G l+p++G
  MMETSP1137-20121227|4734_1 594 TDRYILNKVEATLTLGSRAVIVGGNGSGKSTFLKLLIGDLEPEEG 638
                 5799***************************************99 PP

  == domain 4    score: 28.7 bits;  conditional E-value: 2.7e-09
   TIGR03873 120 ralarvel.ssladrdlstlsGGerqrvhlaralaqePklllldePtnhld 169
                 + la+ ++ ++la  ++  +sGG+rqr  +  a+  +P+++ ldePtn+ld
  MMETSP1137-20121227|4734_1 780 KHLADFGIdQTLAFGKIRQMSGGQRQRLVICAAFWSKPHVIALDEPTNYLD 830
                 45666666246899999*********************************9 PP

>> TIGR02868  CydC: thiol reductant ABC exporter, CydC subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0     1e-05    0.0006     311     382 ..     245     320 ..     218     322 .. 0.75
   2 !   33.0   0.0   9.8e-11   5.6e-09     470     529 ..     385     443 ..     379     444 .. 0.92
   3 !   42.4   0.0   1.4e-13     8e-12     331     390 ..     578     638 ..     538     664 .. 0.90
   4 !   24.4   0.0   3.9e-08   2.3e-06     467     505 ..     794     832 ..     765     837 .. 0.82

  Alignments for each domain:
  == domain 1    score: 16.4 bits;  conditional E-value: 1e-05
   TIGR02868 311 ldakvevaeasapaaeaaas.....ekptlelrdlsvsypgaeevlkgvsldlepGervavvGasGaGKstLlalla 382
                 +d +ve  ++  p+++++       +++ l ++++  ++ g    l++ ++  e G+r  ++G+ G+GK+tLl+ la
  MMETSP1137-20121227|4734_1 245 ADSAVEYYKQMLPEESKQMLaksgdKDFALDMQNIILAFAGR-VLLRKADVRFERGHRYGLIGQNGTGKTTLLNRLA 320
                 4444333333333333333233444899***********998.569***************************9875 PP

  == domain 2    score: 33.0 bits;  conditional E-value: 9.8e-11
   TIGR02868 470 arlSGGerqRlalARaLladapvllLDEPtehLDaeteeelledLlaaeegrtvvlvthr 529
                 ++lSGG + R+ +A  ++++ ++llLDEPt hLD e+ + l + Ll+ ++g t+ +v+h+
  MMETSP1137-20121227|4734_1 385 NSLSGGWKMRMSVAISMMHEPELLLLDEPTNHLDREAIDWLTNHLLS-LKGVTIAVVSHD 443
                 589******************************************96.678888889886 PP

  == domain 3    score: 42.4 bits;  conditional E-value: 1.4e-13
   TIGR02868 331 ekptlelrdlsvsypgaee.vlkgvsldlepGervavvGasGaGKstLlallaglldplkG 390
                  kp ++l+d+s++yp+ ++ +l++v+++l+ G+r  +vG  G+GKst l+ll+g l+p++G
  MMETSP1137-20121227|4734_1 578 RKPVMTLKDVSFKYPETDRyILNKVEATLTLGSRAVIVGGNGSGKSTFLKLLIGDLEPEEG 638
                 68999******************************************************99 PP

  == domain 4    score: 24.4 bits;  conditional E-value: 3.9e-08
   TIGR02868 467 eggarlSGGerqRlalARaLladapvllLDEPtehLDae 505
                 ++ +++SGG+rqRl++  a  ++  v+ LDEPt  LD +
  MMETSP1137-20121227|4734_1 794 GKIRQMSGGQRQRLVICAAFWSKPHVIALDEPTNYLDND 832
                 556789*******************************76 PP

>> TIGR03608  L_ocin_972_ABC: putative bacteriocin export ABC transporter, lactococcin 972 group
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.2   0.0   9.1e-09   5.2e-07       1      47 [.     276     322 ..     276     327 .. 0.93
   2 !   44.9   0.0   3.4e-14     2e-12     102     197 ..     353     447 ..     344     455 .. 0.87
   3 !   17.8   0.0   6.7e-06   0.00038       4      50 ..     587     636 ..     584     659 .. 0.81
   4 !   25.3   0.0   3.4e-08     2e-06     113     169 ..     776     833 ..     755     838 .. 0.88

  Alignments for each domain:
  == domain 1    score: 27.2 bits;  conditional E-value: 9.1e-09
   TIGR03608   1 lkniskkfkdkeilkklslkiekGelvaivGesGsGKstlLnilgll 47 
                 ++ni   f  +++l+k ++++e+G+ + ++G+ G+GK+tlLn l+  
  MMETSP1137-20121227|4734_1 276 MQNIILAFAGRVLLRKADVRFERGHRYGLIGQNGTGKTTLLNRLAAK 322
                 6899999***********************************99975 PP

  == domain 2    score: 44.9 bits;  conditional E-value: 3.4e-14
   TIGR03608 102 klkkkskkekekkkkevlekvgl.ekklkkkiyelsgGekqRvalarillkeselilADEPtgsLDkknreevlellkelkeegktiiivtHdpeva 197
                 k+k  + ++ ++ ++evl +v++ e+ +++++ +lsgG k R+++a  +++e+el+l DEPt  LD++  + + + l +lk  g ti +v Hd    
  MMETSP1137-20121227|4734_1 353 KMKAPEGRQVDSIVEEVLSRVNFpEEFKSTYVNSLSGGWKMRMSVAISMMHEPELLLLDEPTNHLDREAIDWLTNHLLSLK--GVTIAVVSHDYDFI 447
                 5555566677788999*******8889999***********************************************9985..99********8654 PP

  == domain 3    score: 17.8 bits;  conditional E-value: 6.7e-06
   TIGR03608   4 iskkf..kdkeilkklslkiekGelvaivGesGsGKstlLni.lgllekk 50 
                 +s k+  +d+ il+k++ ++  G+   ivG  GsGKst+L + +g le +
  MMETSP1137-20121227|4734_1 587 VSFKYpeTDRYILNKVEATLTLGSRAVIVGGNGSGKSTFLKLlIGDLEPE 636
                 55555225789*****************************9626777765 PP

  == domain 4    score: 25.3 bits;  conditional E-value: 3.4e-08
   TIGR03608 113 kkkkevlekvglekklk.kkiyelsgGekqRvalarillkeselilADEPtgsLDkkn 169
                  ++ ++l ++g++++l   ki ++sgG++qR+ +  +   ++++i  DEPt  LD+++
  MMETSP1137-20121227|4734_1 776 AEVLKHLADFGIDQTLAfGKIRQMSGGQRQRLVICAAFWSKPHVIALDEPTNYLDNDS 833
                 5677899999**6666538************************************976 PP

>> TIGR02673  FtsE: cell division ATP-binding protein FtsE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   0.0   0.00018      0.01       3      51 ..     275     322 ..     273     328 .. 0.86
   2 !   47.9   0.0   4.6e-15   2.7e-13     104     212 ..     352     459 ..     339     461 .. 0.87
   3 !   27.1   0.0   1.1e-08   6.3e-07       2      58 ..     582     639 ..     581     666 .. 0.88
   4 !   22.4   0.0   2.9e-07   1.7e-05     111     172 ..     771     833 ..     744     838 .. 0.79

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 0.00018
   TIGR02673   3 elekvskeyaagveaLkdvslkiekgeflfltGasGaGkttllklllga 51 
                 +++++ +++ ag   L++ ++++e+g+ + l+G+ G+Gkttll+ l ++
  MMETSP1137-20121227|4734_1 275 DMQNIILAF-AGRVLLRKADVRFERGHRYGLIGQNGTGKTTLLNRLAAK 322
                 678888888.556689***************************987665 PP

  == domain 2    score: 47.9 bits;  conditional E-value: 4.6e-15
   TIGR02673 104 levrgkkeeeiqkrveevlelvgledkak.alpeelsgGeqqRvaiaRaivnkPelllaDePtGnlDdelserildllkelnkrGttvivathdeelvervkkrvlelek 212
                 l+++  + +++++ veevl+ v++ +  k ++ ++lsgG + R+++a +++++Pelll DePt  lD e    + + l  l+ +G+t+ v++hd +++++v + + + ++
  MMETSP1137-20121227|4734_1 352 LKMKAPEGRQVDSIVEEVLSRVNFPEEFKsTYVNSLSGGWKMRMSVAISMMHEPELLLLDEPTNHLDREAIDWLTNHL--LSLKGVTIAVVSHDYDFIDEVCTDITHYDN 459
                 7777888899999***********9886526799*********************************99988887765..5678***************99887777665 PP

  == domain 3    score: 27.1 bits;  conditional E-value: 1.1e-08
   TIGR02673   2 ielekvskeya.agveaLkdvslkiekgeflfltGasGaGkttllklllgaekpsrGe 58 
                 ++l++vs++y+ ++  +L++v+ +++ g+ + ++G  G+Gk+t+lkll+g ++p++G 
  MMETSP1137-20121227|4734_1 582 MTLKDVSFKYPeTDRYILNKVEATLTLGSRAVIVGGNGSGKSTFLKLLIGDLEPEEGI 639
                 67999*****967899***************************************996 PP

  == domain 4    score: 22.4 bits;  conditional E-value: 2.9e-07
   TIGR02673 111 eeeiqkrveevlelvgledka.kalpeelsgGeqqRvaiaRaivnkPelllaDePtGnlDdel 172
                 +  ++ +v + l   g+++     + +++sgG +qR  i  a  +kP+++  DePt  lD++ 
  MMETSP1137-20121227|4734_1 771 RPITEAEVLKHLADFGIDQTLaFGKIRQMSGGQRQRLVICAAFWSKPHVIALDEPTNYLDNDS 833
                 5556667777778888876641456789********************************875 PP

>> TIGR03375  type_I_sec_LssB: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.0   3.3e-05    0.0019     453     511 ..     261     317 ..     240     324 .. 0.78
   2 !   28.1   0.0   2.3e-09   1.3e-07     602     666 ..     385     448 ..     382     456 .. 0.92
   3 !   40.5   0.0   3.9e-13   2.3e-11     466     522 ..     582     638 ..     569     641 .. 0.95
   4 !   26.7   0.0   6.2e-09   3.6e-07     602     638 ..     797     833 ..     777     853 .. 0.86

  Alignments for each domain:
  == domain 1    score: 14.4 bits;  conditional E-value: 3.3e-05
   TIGR03375 453 ekrllsreklkGeielknvsfkYpeeekaaLknvslkikpGekvaiiGriGsGKstllk 511
                 ++ l++  +   +++++n+ +++    +  L++  ++ + G + ++iG++G+GK+tll+
  MMETSP1137-20121227|4734_1 261 KQMLAKSGDKDFALDMQNIILAFA--GRVLLRKADVRFERGHRYGLIGQNGTGKTTLLN 317
                 455555566666778888888884..567899************************975 PP

  == domain 2    score: 28.1 bits;  conditional E-value: 2.3e-09
   TIGR03375 602 esLSgGQrqavalaRallkdppillLDEPtsalDnsseekllerLkelladkTlvlvtHrtslLe 666
                 +sLSgG +  +++a  ++++p++llLDEPt++lD+++ + l ++L + l++ T+ +v+H   +++
  MMETSP1137-20121227|4734_1 385 NSLSGGWKMRMSVAISMMHEPELLLLDEPTNHLDREAIDWLTNHLLS-LKGVTIAVVSHDYDFID 448
                 58****************************************99976.6899*******877665 PP

  == domain 3    score: 40.5 bits;  conditional E-value: 3.9e-13
   TIGR03375 466 ielknvsfkYpeeekaaLknvslkikpGekvaiiGriGsGKstllklllglyepteG 522
                 + lk+vsfkYpe ++  L++v+ ++  G++  i+G +GsGKst lkll+g +ep+eG
  MMETSP1137-20121227|4734_1 582 MTLKDVSFKYPETDRYILNKVEATLTLGSRAVIVGGNGSGKSTFLKLLIGDLEPEEG 638
                 679****************************************************99 PP

  == domain 4    score: 26.7 bits;  conditional E-value: 6.2e-09
   TIGR03375 602 esLSgGQrqavalaRallkdppillLDEPtsalDnss 638
                 +++SgGQrq +++  a+ ++p+++ LDEPt+ lDn s
  MMETSP1137-20121227|4734_1 797 RQMSGGQRQRLVICAAFWSKPHVIALDEPTNYLDNDS 833
                 789*******************************987 PP

>> TIGR01166  cbiO: cobalt ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.0   2.2e-06   0.00013       7      39 ..     288     320 ..     283     324 .. 0.90
   2 !   38.5   0.0   2.9e-12   1.7e-10     101     189 ..     359     446 ..     350     447 .. 0.91
   3 !   24.4   0.0   6.4e-08   3.7e-06       5      47 ..     596     638 ..     591     667 .. 0.87
   4 !   22.4   0.0   2.5e-07   1.4e-05     112     162 ..     782     833 ..     771     839 .. 0.82

  Alignments for each domain:
  == domain 1    score: 19.4 bits;  conditional E-value: 2.2e-06
   TIGR01166   7 vlkglnlavergevlallGanGaGkstlllhln 39 
                  l++ ++++erg++ +l+G+nG+Gk+tll+ l+
  MMETSP1137-20121227|4734_1 288 LLRKADVRFERGHRYGLIGQNGTGKTTLLNRLA 320
                 5788999**********************9987 PP

  == domain 2    score: 38.5 bits;  conditional E-value: 2.9e-12
   TIGR01166 101 eaeverrvrealaavdi.sgleerpthllsgGekkrvaiagavalrpdvllldePtagldpaGaeqlleilrklreeGktvvisthdvdl 189
                 + +v++ v+e l+ v+  +++++  ++ lsgG k r+++a  +  +p++llldePt  ld +  + l++ l  l  +G t+ + +hd d+
  MMETSP1137-20121227|4734_1 359 GRQVDSIVEEVLSRVNFpEEFKSTYVNSLSGGWKMRMSVAISMMHEPELLLLDEPTNHLDREAIDWLTNHLLSL--KGVTIAVVSHDYDF 446
                 4679999*********8568***********************************************9988555..79*********986 PP

  == domain 3    score: 24.4 bits;  conditional E-value: 6.4e-08
   TIGR01166   5 aevlkglnlavergevlallGanGaGkstlllhlnGllrPksG 47 
                   +l++++ +++ g++ +++G nG+Gkst+l+ l G l P++G
  MMETSP1137-20121227|4734_1 596 RYILNKVEATLTLGSRAVIVGGNGSGKSTFLKLLIGDLEPEEG 638
                 458999***********************************99 PP

  == domain 4    score: 22.4 bits;  conditional E-value: 2.5e-07
   TIGR01166 112 laavdis.gleerpthllsgGekkrvaiagavalrpdvllldePtagldpaG 162
                 la  +i+  l+   ++++sgG+++r+ i +a   +p+v+ ldePt  ld + 
  MMETSP1137-20121227|4734_1 782 LADFGIDqTLAFGKIRQMSGGQRQRLVICAAFWSKPHVIALDEPTNYLDNDS 833
                 55555541356667899********************************875 PP

>> TIGR03740  galliderm_ABC: lantibiotic protection ABC transporter, ATP-binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.0   4.9e-06   0.00029       1      46 [.     274     319 ..     274     323 .. 0.93
   2 !   47.2   0.0   7.9e-15   4.5e-13      92     199 ..     353     459 ..     342     465 .. 0.84
   3 !   17.4   0.0   9.9e-06   0.00057       4      56 ..     585     639 ..     582     665 .. 0.83
   4 !   20.0   0.0   1.6e-06   9.2e-05     120     157 ..     794     831 ..     755     853 .. 0.82

  Alignments for each domain:
  == domain 1    score: 18.4 bits;  conditional E-value: 4.9e-06
   TIGR03740   1 letknlskkfkkqavvnnvslkvkknsvygllGpnGaGkstllkll 46 
                 l+++n+  +f  + ++ + +++ ++ + ygl+G nG+Gk+tll  l
  MMETSP1137-20121227|4734_1 274 LDMQNIILAFAGRVLLRKADVRFERGHRYGLIGQNGTGKTTLLNRL 319
                 67899999**********************************9765 PP

  == domain 2    score: 47.2 bits;  conditional E-value: 7.9e-15
   TIGR03740  92 kvrtlllglpesrieevlkivdlentekkk.akqfslGmkqrlGiaiallnkPkllildePtnGldPlGiqelreliksfpekGitvilsshilsevelladhiGiise 199
                 k+++      +s +eevl+ v++ ++ k + ++ +s G k r+ +ai+++++P+ll+ldePtn ld   i+ l + + s+  kG+t+ + sh    +++++  i    +
  MMETSP1137-20121227|4734_1 353 KMKAPEGRQVDSIVEEVLSRVNFPEEFKSTyVNSLSGGWKMRMSVAISMMHEPELLLLDEPTNHLDREAIDWLTNHLLSL--KGVTIAVVSHDYDFIDEVCTDITHYDN 459
                 55555555668999*********99988753899****************************************988777..79********98888887776665555 PP

  == domain 3    score: 17.4 bits;  conditional E-value: 9.9e-06
   TIGR03740   4 knlskkf..kkqavvnnvslkvkknsvygllGpnGaGkstllklltGllrktsGe 56 
                 k++s k+   ++ ++n+v+ ++   s   ++G nG+Gkst lkll G l++++G 
  MMETSP1137-20121227|4734_1 585 KDVSFKYpeTDRYILNKVEATLTLGSRAVIVGGNGSGKSTFLKLLIGDLEPEEGI 639
                 55665662235789999999999999999*********************99984 PP

  == domain 4    score: 20.0 bits;  conditional E-value: 1.6e-06
   TIGR03740 120 kkakqfslGmkqrlGiaiallnkPkllildePtnGldP 157
                  k +q+s G +qrl i  a+  kP+++ ldePtn ld 
  MMETSP1137-20121227|4734_1 794 GKIRQMSGGQRQRLVICAAFWSKPHVIALDEPTNYLDN 831
                 57899*******************************95 PP

>> TIGR00960  3a0501s02: type II secretory pathway family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   0.0     0.035         2      18      51 ..     288     321 ..     274     326 .. 0.81
   2 !   41.2   0.0   5.7e-13   3.3e-11     102     211 ..     349     457 ..     317     461 .. 0.82
   3 !   30.2   0.0   1.3e-09   7.3e-08       2      61 ..     582     641 ..     581     664 .. 0.88
   4 !   23.6   0.0   1.4e-07     8e-06     136     173 ..     796     833 ..     750     876 .. 0.83

  Alignments for each domain:
  == domain 1    score: 5.9 bits;  conditional E-value: 0.035
   TIGR00960  18 aldnvtvkiekGelvflvGhsGaGkstllklilg 51 
                  l +  v+ e+G    l+G+ G+Gk+tll+ + +
  MMETSP1137-20121227|4734_1 288 LLRKADVRFERGHRYGLIGQNGTGKTTLLNRLAA 321
                 4788889999***99**************97765 PP

  == domain 2    score: 41.2 bits;  conditional E-value: 5.7e-13
   TIGR00960 102 alalriiGvkgreieervsaalekvGlkdk.akalPvqlsgGeqqrvaiaravvnkPallladePtgnlddelsrdilelleevnraGttvlvathdenlveskrkrvltl 211
                    l++   +gr+++  v+++l +v + +  + ++   lsgG + r+++a +++++P+lll dePt  ld+e    + + l  +  +G+t+ v +hd +++++    + + 
  MMETSP1137-20121227|4734_1 349 RTFLKMKAPEGRQVDSIVEEVLSRVNFPEEfKSTYVNSLSGGWKMRMSVAISMMHEPELLLLDEPTNHLDREAIDWLTNHL--LSLKGVTIAVVSHDYDFIDEVCTDITHY 457
                 555777778899**************977625567789*********************************9877776655..6678**************9987776655 PP

  == domain 3    score: 30.2 bits;  conditional E-value: 1.3e-09
   TIGR00960   2 ikfeqvskaykgaaelaldnvtvkiekGelvflvGhsGaGkstllklilgiekpsaGkir 61 
                 +++++vs +y+ + +  l++v+  ++ G+ + +vG  G+Gkst+lkl++g  +p +G   
  MMETSP1137-20121227|4734_1 582 MTLKDVSFKYPETDRYILNKVEATLTLGSRAVIVGGNGSGKSTFLKLLIGDLEPEEGIGA 641
                 6899**********************************************9999988554 PP

  == domain 4    score: 23.6 bits;  conditional E-value: 1.4e-07
   TIGR00960 136 PvqlsgGeqqrvaiaravvnkPallladePtgnlddel 173
                   q+sgG++qr+ i  a+ +kP+++  dePt  ld++ 
  MMETSP1137-20121227|4734_1 796 IRQMSGGQRQRLVICAAFWSKPHVIALDEPTNYLDNDS 833
                 469********************************985 PP

>> TIGR01188  drrA: daunorubicin resistance ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.3   0.0   0.00056     0.033       9      40 ..     289     320 ..     283     322 .. 0.87
   2 !   47.8   0.0   4.5e-15   2.6e-13     101     200 ..     362     460 ..     351     465 .. 0.85
   3 !   10.9   0.0   0.00075     0.044      11      50 ..     601     640 ..     593     667 .. 0.84
   4 !   29.9   0.0   1.3e-09   7.3e-08     120     159 ..     794     833 ..     774     850 .. 0.89

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 0.00056
   TIGR01188   9 vdgvnlkveegevfglLGPnGAGKtttikmLt 40 
                 +++ +++ e+g+ +gl+G nG GKtt+++ L+
  MMETSP1137-20121227|4734_1 289 LRKADVRFERGHRYGLIGQNGTGKTTLLNRLA 320
                 566788999******************98775 PP

  == domain 2    score: 47.8 bits;  conditional E-value: 4.5e-15
   TIGR01188 101 aeeraeellelvelke.aadkkvktysgGmrrrlelaasliaqPevlfLDEPtiGLDprtrraiwdlieelkkegvtilltthyleeadkladrvaiidkG 200
                  ++ +ee+l +v++ e ++  +v+ +sgG + r+++a+s++++Pe+l LDEPt  LD ++ + + + + +l  +gvti + +h+ + +d+++  ++  d+G
  MMETSP1137-20121227|4734_1 362 VDSIVEEVLSRVNFPEeFKSTYVNSLSGGWKMRMSVAISMMHEPELLLLDEPTNHLDREAIDWLTNHLLSL--KGVTIAVVSHDYDFIDEVCTDITHYDNG 460
                 5667899*****9965167889***********************************77766665555444..49******************99987776 PP

  == domain 3    score: 10.9 bits;  conditional E-value: 0.00075
   TIGR01188  11 gvnlkveegevfglLGPnGAGKtttikmLttllkPdsGta 50 
                 +v+  ++ g+   ++G nG GK+t +k+L + l+P++G +
  MMETSP1137-20121227|4734_1 601 KVEATLTLGSRAVIVGGNGSGKSTFLKLLIGDLEPEEGIG 640
                 555666667777899**********************976 PP

  == domain 4    score: 29.9 bits;  conditional E-value: 1.3e-09
   TIGR01188 120 kkvktysgGmrrrlelaasliaqPevlfLDEPtiGLDprt 159
                  k++++sgG+r+rl + a++ ++P+v+ LDEPt  LD  +
  MMETSP1137-20121227|4734_1 794 GKIRQMSGGQRQRLVICAAFWSKPHVIALDEPTNYLDNDS 833
                 589*********************************9876 PP

>> TIGR03864  PQQ_ABC_ATP: ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0   1.9e-05    0.0011       1      47 [.     273     319 ..     273     324 .. 0.92
   2 !   40.5   0.0   7.4e-13   4.3e-11     107     195 ..     360     449 ..     347     455 .. 0.81
   3 !   18.8   0.0   3.2e-06   0.00018       3      56 ..     583     638 ..     581     656 .. 0.87
   4 !   24.5   0.0     6e-08   3.5e-06     109     168 ..     774     834 ..     759     853 .. 0.84

  Alignments for each domain:
  == domain 1    score: 16.3 bits;  conditional E-value: 1.9e-05
   TIGR03864   1 aleveglsfaygkrralddvsltvakgefvaLLGpnGaGkstLfsll 47 
                 al ++++  a++ r  l++ +++ ++g+   L+G nG Gk+tL++ l
  MMETSP1137-20121227|4734_1 273 ALDMQNIILAFAGRVLLRKADVRFERGHRYGLIGQNGTGKTTLLNRL 319
                 57899999***********************************9755 PP

  == domain 2    score: 40.5 bits;  conditional E-value: 7.4e-13
   TIGR03864 107 aeaeerieealarlglaeraeek.vreLnGGhrrrveiarallhePklLLlDeatvGLDiesraalveevrelvreeglsvLWathlvde 195
                 +++ + +ee+l+r+++ e  ++  v++L+GG + r+ +a +++heP+lLLlDe+t  LD e+ + l++++ +l   +   v     ++de
  MMETSP1137-20121227|4734_1 360 RQVDSIVEEVLSRVNFPEEFKSTyVNSLSGGWKMRMSVAISMMHEPELLLLDEPTNHLDREAIDWLTNHLLSLKGVTIAVVSHDYDFIDE 449
                 677888999*******98876555******************************************999988873333333333334555 PP

  == domain 3    score: 18.8 bits;  conditional E-value: 3.2e-06
   TIGR03864   3 eveglsfay..gkrralddvsltvakgefvaLLGpnGaGkstLfslltrLyeakeg 56 
                 +++++sf+y  ++r +l++v+ t++ g+ ++++G nG+Gkst ++ll + +e +eg
  MMETSP1137-20121227|4734_1 583 TLKDVSFKYpeTDRYILNKVEATLTLGSRAVIVGGNGSGKSTFLKLLIGDLEPEEG 638
                 6788999993335789******************************9887766655 PP

  == domain 4    score: 24.5 bits;  conditional E-value: 6e-08
   TIGR03864 109 aeerieealarlglaerae.ekvreLnGGhrrrveiarallhePklLLlDeatvGLDiesr 168
                 +e+++ ++la++g+ +  +  k+r+++GG+r+r+ i  a   +P+++ lDe+t  LD +s 
  MMETSP1137-20121227|4734_1 774 TEAEVLKHLADFGIDQTLAfGKIRQMSGGQRQRLVICAAFWSKPHVIALDEPTNYLDNDSV 834
                 4566778888888887754279***********************************9885 PP

>> TIGR00972  3a0107s01c2: phosphate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.4   0.0   0.00028     0.016       2      47 ..     274     319 ..     273     351 .. 0.90
   2 !   46.5   0.0   1.1e-14   6.1e-13     113     218 ..     358     459 ..     346     468 .. 0.87
   3 !   10.8   0.0   0.00087      0.05       2      47 ..     582     629 ..     581     636 .. 0.85
   4 !   28.4   0.0   3.5e-09     2e-07     143     181 ..     797     835 ..     754     872 .. 0.78

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 0.00028
   TIGR00972   2 levknlklfygekealkdvnleikknkvtaliGpsGcGkstllrsl 47 
                 l+++n+ l ++ +  l++ ++ +++ +  +liG  G+Gk+tll  l
  MMETSP1137-20121227|4734_1 274 LDMQNIILAFAGRVLLRKADVRFERGHRYGLIGQNGTGKTTLLNRL 319
                 67899999**********************************9765 PP

  == domain 2    score: 46.5 bits;  conditional E-value: 1.1e-14
   TIGR00972 113 dkkeldeiveesLkkaalwdevkdklkksalsLsGGqqqrlciaralavePevlLlDePtsaLDpiatekieeliqeLkkkytivivthnmqqaarvsdktaffle 218
                 + +++d+ivee L+++ + +e k+   ++ +sLsGG + r+++a ++  ePe+lLlDePt  LD +a   + + + +Lk  +ti +v h+ ++  +v   ++ + +
  MMETSP1137-20121227|4734_1 358 EGRQVDSIVEEVLSRVNFPEEFKS---TYVNSLSGGWKMRMSVAISMMHEPELLLLDEPTNHLDREAIDWLTNHLLSLKG-VTIAVVSHDYDFIDEVCTDITHYDN 459
                 45789*****************96...57889**********************************************85.8**********99998766555544 PP

  == domain 3    score: 10.8 bits;  conditional E-value: 0.00087
   TIGR00972   2 levknlklfygeke..alkdvnleikknkvtaliGpsGcGkstllrsl 47 
                 ++ k++++ y e     l++v+  ++  + ++++G  G+Gkst+l+ l
  MMETSP1137-20121227|4734_1 582 MTLKDVSFKYPETDryILNKVEATLTLGSRAVIVGGNGSGKSTFLKLL 629
                 667888888866543489***************************976 PP

  == domain 4    score: 28.4 bits;  conditional E-value: 3.5e-09
   TIGR00972 143 lsLsGGqqqrlciaralavePevlLlDePtsaLDpiate 181
                  ++sGGq+qrl+i  a   +P+v+ lDePt  LD  +++
  MMETSP1137-20121227|4734_1 797 RQMSGGQRQRLVICAAFWSKPHVIALDEPTNYLDNDSVA 835
                 479*******************************98765 PP

>> TIGR02315  ABC_phnC: phosphonate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0   3.9e-05    0.0023       3      48 ..     275     319 ..     273     327 .. 0.87
   2 !   34.5   0.0   5.2e-11     3e-09     127     217 ..     367     455 ..     349     462 .. 0.87
   3 !   17.4   0.0   8.4e-06   0.00049       2      57 ..     582     638 ..     581     669 .. 0.81
   4 !   30.3   0.0   9.7e-10   5.6e-08     124     180 ..     776     833 ..     760     841 .. 0.89

  Alignments for each domain:
  == domain 1    score: 15.2 bits;  conditional E-value: 3.9e-05
   TIGR02315   3 evenlskvypngkqalknvnleikkGelvaviGlsGaGkstllrsi 48 
                  ++n+   ++ g+  l++ ++ +++G   ++iG+ G+Gk+tll  +
  MMETSP1137-20121227|4734_1 275 DMQNIILAFA-GRVLLRKADVRFERGHRYGLIGQNGTGKTTLLNRL 319
                 5677777888.8999***************************9765 PP

  == domain 2    score: 34.5 bits;  conditional E-value: 5.2e-11
   TIGR02315 127 lelLervgl.aelaakradqLsGGqqqRvaiaRalaqqpklilaDEPiasLDpksskqvmdllkrinkekgitvivnlHqvdlakkyadriv 217
                  e+L+rv++ +e++++ +++LsGG + R+++a +++ +p+l+l DEP+  LD ++   + + l ++   kg+t+ v  H+ d+  + ++ i 
  MMETSP1137-20121227|4734_1 367 EEVLSRVNFpEEFKSTYVNSLSGGWKMRMSVAISMMHEPELLLLDEPTNHLDREAIDWLTNHLLSL---KGVTIAVVSHDYDFIDEVCTDIT 455
                 578999999345677899************************************999998888776...79999999999999999988776 PP

  == domain 3    score: 17.4 bits;  conditional E-value: 8.4e-06
   TIGR02315   2 levenlskvypn.gkqalknvnleikkGelvaviGlsGaGkstllrsinrlveissg 57 
                 + ++++s +yp+ ++ +l++v+ +++ G   +++G  G+Gkst+l+ + +  e+++g
  MMETSP1137-20121227|4734_1 582 MTLKDVSFKYPEtDRYILNKVEATLTLGSRAVIVGGNGSGKSTFLKLLIGDLEPEEG 638
                 5688999999972567899***************************98665566555 PP

  == domain 4    score: 30.3 bits;  conditional E-value: 9.7e-10
   TIGR02315 124 ekAlelLervglae.laakradqLsGGqqqRvaiaRalaqqpklilaDEPiasLDpks 180
                 ++ l+ L+ +g+++ la  +  q+sGGq+qR+ i+ a+  +p++i  DEP+  LD+ s
  MMETSP1137-20121227|4734_1 776 AEVLKHLADFGIDQtLAFGKIRQMSGGQRQRLVICAAFWSKPHVIALDEPTNYLDNDS 833
                 5668899999998625789************************************876 PP

>> TIGR02211  LolD_lipo_ex: lipoprotein releasing system, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.2   0.0   0.00071     0.041      20      55 ..     288     323 ..     284     327 .. 0.89
   2 !   37.9   0.0     5e-12   2.9e-10     118     210 ..     362     452 ..     348     461 .. 0.83
   3 !   21.1   0.0   6.8e-07   3.9e-05      11      60 ..     589     638 ..     581     659 .. 0.86
   4 !   26.1   0.0     2e-08   1.1e-06     138     177 ..     795     834 ..     772     854 .. 0.84

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 0.00071
   TIGR02211  20 vlkgvsleiekgelvaivGssGsGkstllhllggld 55 
                 +l++ +++ e+g   +++G+ G+Gk+tll  l++ d
  MMETSP1137-20121227|4734_1 288 LLRKADVRFERGHRYGLIGQNGTGKTTLLNRLAAKD 323
                 578889999*********************999876 PP

  == domain 2    score: 37.9 bits;  conditional E-value: 5e-12
   TIGR02211 118 akerakellekvglekrin.kkpselsGGerqrvaiaralvnkPklvladePtgnldkktakkifelllelnkekntallvvthdlelakkldr 210
                  +++ +e+l++v++ +  +  +   lsGG + r+++a +++ +P+l+l dePt +ld+++ + + +   +l + k++++ vv+hd ++++++  
  MMETSP1137-20121227|4734_1 362 VDSIVEEVLSRVNFPEEFKsTYVNSLSGGWKMRMSVAISMMHEPELLLLDEPTNHLDREAIDWLTN---HLLSLKGVTIAVVSHDYDFIDEVCT 452
                 56677899999*9988876257899*********************************98776655...555667999*********9987755 PP

  == domain 3    score: 21.1 bits;  conditional E-value: 6.8e-07
   TIGR02211  11 ykegkleievlkgvsleiekgelvaivGssGsGkstllhllggldkptsG 60 
                 +k  +++  +l++v+  ++ g  + ivG  GsGkst+l ll g  +p +G
  MMETSP1137-20121227|4734_1 589 FKYPETDRYILNKVEATLTLGSRAVIVGGNGSGKSTFLKLLIGDLEPEEG 638
                 5556677889******************************9886667666 PP

  == domain 4    score: 26.1 bits;  conditional E-value: 2e-08
   TIGR02211 138 kpselsGGerqrvaiaralvnkPklvladePtgnldkkta 177
                 k  ++sGG+rqr  i  a+ +kP+++  dePt  ld+++ 
  MMETSP1137-20121227|4734_1 795 KIRQMSGGQRQRLVICAAFWSKPHVIALDEPTNYLDNDSV 834
                 56789*******************************9874 PP

>> TIGR03410  urea_trans_UrtE: urea ABC transporter, ATP-binding protein UrtE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   5.5e-05    0.0032       1      47 [.     274     320 ..     274     325 .. 0.91
   2 !   31.8   0.0   3.5e-10     2e-08     105     208 ..     360     460 ..     346     465 .. 0.85
   3 !   19.3   0.0   2.4e-06   0.00014       2      56 ..     583     639 ..     582     656 .. 0.86
   4 !   26.4   0.0   1.5e-08   8.8e-07      97     211 ..     765     869 ..     760     878 .. 0.71

  Alignments for each domain:
  == domain 1    score: 14.8 bits;  conditional E-value: 5.5e-05
   TIGR03410   1 levenlevaYgesevlrdvslevekgevvavlGrngvGkttllkalv 47 
                 l+++n+ +a+    +lr+ +++ e+g+   ++G+ng+Gkttll  l 
  MMETSP1137-20121227|4734_1 274 LDMQNIILAFAGRVLLRKADVRFERGHRYGLIGQNGTGKTTLLNRLA 320
                 578899999999999****************************8775 PP

  == domain 2    score: 31.8 bits;  conditional E-value: 3.5e-10
   TIGR03410 105 kkekkipeeiyelFPvlkemlkRrgGdLsGGqqqqlaiaRaLvtePklllLDePteGiqPsiikeiekvikelakekdlaillveqvldfaleladrylvlerG 208
                 ++  +i ee+++     +e+++     LsGG +  +++a +++ eP+lllLDePt+ +    i+ + + +    + k+++i +v + +df  e+   ++  ++G
  MMETSP1137-20121227|4734_1 360 RQVDSIVEEVLSRVNFPEEFKSTYVNSLSGGWKMRMSVAISMMHEPELLLLDEPTNHLDREAIDWLTNHL---LSLKGVTIAVVSHDYDFIDEVCTDITHYDNG 460
                 3466788899998888899999999**********************************99887777655...555789**************99988877776 PP

  == domain 3    score: 19.3 bits;  conditional E-value: 2.4e-06
   TIGR03410   2 evenlevaYgese..vlrdvslevekgevvavlGrngvGkttllkalvgllkvksGe 56 
                 ++++++ +Y e+   +l++v+ +++ g+ ++++G ng Gk+t+lk l+g l+ ++G 
  MMETSP1137-20121227|4734_1 583 TLKDVSFKYPETDryILNKVEATLTLGSRAVIVGGNGSGKSTFLKLLIGDLEPEEGI 639
                 5778888887764449***********************************999984 PP

  == domain 4    score: 26.4 bits;  conditional E-value: 1.5e-08
   TIGR03410  97 elglealkkkekkipeeiyelFPvlkemlkRrgGdLsGGqqqqlaiaRaLvtePklllLDePteGiqPsiikeiekvikelakekdlaillveqvldfaleladrylvlerGevv 211
                 e g++ ++ +e ++ +++ + F + +++   +  ++sGGq+q l i  a  ++P+++ LDePt+ +    ++          k+ + a++ v ++  f+ e++++ +v+e G+v+
  MMETSP1137-20121227|4734_1 765 ESGMAIRPITEAEVLKHL-ADFGIDQTLAFGKIRQMSGGQRQRLVICAAFWSKPHVIALDEPTNYLDNDSVAX---------KDFKGAVVTVSENEAFVAEISNEKWVVEDGKVT 869
                 566666666666666554.3477777777777889****************************9877654432.........233345666666666777777777777777765 PP

>> TIGR03797  NHLM_micro_ABC2: NHLM bacteriocin system ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.2   0.0    0.0058      0.33     439     497 ..     261     317 ..     160     323 .. 0.86
   2 !   20.9   0.0     4e-07   2.3e-05     587     644 ..     385     443 ..     381     460 .. 0.87
   3 !   32.3   0.0   1.4e-10   8.3e-09     453     508 ..     583     638 ..     579     641 .. 0.95
   4 !   30.1   0.0   6.8e-10   3.9e-08     588     623 ..     798     833 ..     789     838 .. 0.92

  Alignments for each domain:
  == domain 1    score: 7.2 bits;  conditional E-value: 0.0058
   TIGR03797 439 deekvdpgkLsGaievdrvtFrYekdgplvLddvslkiepGefvaivGaSGsGKStllr 497
                 ++  ++ g+   a++++++  ++   g++ L++  ++ e G   +++G+ G+GK tll 
  MMETSP1137-20121227|4734_1 261 KQMLAKSGDKDFALDMQNIILAF--AGRVLLRKADVRFERGHRYGLIGQNGTGKTTLLN 317
                 44455667777778888888888..79999***************************96 PP

  == domain 2    score: 20.9 bits;  conditional E-value: 4e-07
   TIGR03797 587 gtlSGGQrQRlliAralvrkPrillfDEATSALDNrtQaiVsesleklk.vtRiviAHR 644
                 ++lSGG + R+ +A ++++ P++ll+DE T  LD ++    ++ l  lk vt  v+ H 
  MMETSP1137-20121227|4734_1 385 NSLSGGWKMRMSVAISMMHEPELLLLDEPTNHLDREAIDWLTNHLLSLKgVTIAVVSHD 443
                 78*****************************************9999984566677885 PP

  == domain 3    score: 32.3 bits;  conditional E-value: 1.4e-10
   TIGR03797 453 evdrvtFrYekdgplvLddvslkiepGefvaivGaSGsGKStllrlLLgFekPesG 508
                 +++ v+F+Y +  + +L++v  +   G    ivG  GsGKSt+l+lL+g  +Pe+G
  MMETSP1137-20121227|4734_1 583 TLKDVSFKYPETDRYILNKVEATLTLGSRAVIVGGNGSGKSTFLKLLIGDLEPEEG 638
                 6899*********************************************9999998 PP

  == domain 4    score: 30.1 bits;  conditional E-value: 6.8e-10
   TIGR03797 588 tlSGGQrQRlliAralvrkPrillfDEATSALDNrt 623
                 ++SGGQrQRl+i  a  +kP+++ +DE T  LDN +
  MMETSP1137-20121227|4734_1 798 QMSGGQRQRLVICAAFWSKPHVIALDEPTNYLDNDS 833
                 79********************************86 PP

>> TIGR01189  ccmA: heme ABC exporter, ATP-binding protein CcmA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.9   0.3   1.5e-13   8.8e-12       1     170 [.     274     429 ..     274     446 .. 0.87
   2 !   24.5   0.0     7e-08   4.1e-06      12      75 ..     595     658 ..     584     669 .. 0.79
   3 !   18.7   0.0     4e-06   0.00023     108     164 ..     778     835 ..     763     857 .. 0.83

  Alignments for each domain:
  == domain 1    score: 42.9 bits;  conditional E-value: 1.5e-13
   TIGR01189   1 LeaeelaveRgervlleglsfelaaGealvveGpnGiGKttLLRilaGLlkpesGevelndkelaeqrdelaeellylgHldglKaeLsalEnLkfyaallqseqktveealekvgL.sgledlpvaqLsAGqkrRlalarLllskaplWiLDEPttalDkegvellaell 170
                 L++++++ +  +rvll++ ++++  G+   + G+nG+GKttLL  la   k      ++n+ + +e       ++ y+ H+    + + ++  Lk  a   ++ +  vee l +v+  ++++ + v++Ls G k R+++a  ++ +  l +LDEPt  lD+e+++ l+++l
  MMETSP1137-20121227|4734_1 274 LDMQNIILAFAGRVLLRKADVRFERGHRYGLIGQNGTGKTTLLNRLAA--K------DINGFP-QEL------RTWYIRHEVLCDDGIDVRTFLKMKAPEGRQVDSIVEEVLSRVNFpEEFKSTYVNSLSGGWKMRMSVAISMMHEPELLLLDEPTNHLDREAIDWLTNHL 429
                 567888899999*******************************98884..2......233222.222......467***********************9999999**********9567999*******************************************99887 PP

  == domain 2    score: 24.5 bits;  conditional E-value: 7e-08
   TIGR01189  12 ervlleglsfelaaGealvveGpnGiGKttLLRilaGLlkpesGevelndkelaeqrdelaeel 75 
                  r +l++++ +l+ G   v++G nG+GK+t L++l G l+pe+G  ++ +++  +     +++l
  MMETSP1137-20121227|4734_1 595 DRYILNKVEATLTLGSRAVIVGGNGSGKSTFLKLLIGDLEPEEGIGAAWKHHALRLSYVAQQSL 658
                 6889***************************************965444344444444444555 PP

  == domain 3    score: 18.7 bits;  conditional E-value: 4e-06
   TIGR01189 108 veealekvgLsgl.edlpvaqLsAGqkrRlalarLllskaplWiLDEPttalDkegve 164
                 v + l++ g++++ +   ++q+s Gq++Rl +   + sk  +  LDEPt  lD+++v+
  MMETSP1137-20121227|4734_1 778 VLKHLADFGIDQTlAFGKIRQMSGGQRQRLVICAAFWSKPHVIALDEPTNYLDNDSVA 835
                 55666666766541445789**********************************9986 PP

>> TIGR03411  urea_trans_UrtD: urea ABC transporter, ATP-binding protein UrtD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   3.5e-05     0.002       2      49 ..     273     320 ..     272     325 .. 0.92
   2 !   41.1   0.0   5.9e-13   3.4e-11     113     219 ..     355     461 ..     340     465 .. 0.85
   3 !   18.3   0.0   5.4e-06   0.00031      17      58 ..     598     639 ..     580     657 .. 0.81
   4 !   12.5   0.0   0.00031     0.018     140     221 ..     795     869 ..     758     872 .. 0.77

  Alignments for each domain:
  == domain 1    score: 15.6 bits;  conditional E-value: 3.5e-05
   TIGR03411   2 iLevedvsvsfdgfkalndlslsveegelrviiGpnGaGkttllDvit 49 
                 +L+++++  +f g   l++ +++ e+g+   +iG nG Gkttll+ ++
  MMETSP1137-20121227|4734_1 273 ALDMQNIILAFAGRVLLRKADVRFERGHRYGLIGQNGTGKTTLLNRLA 320
                 6899***************************************98766 PP

  == domain 2    score: 41.1 bits;  conditional E-value: 5.9e-13
   TIGR03411 113 farlskeekerieevleligLeekad.kkaglLshGqkqwLeigmllvqepkllllDePvaGmtdeetektaellkelakersvvvvehDmefvrelaekvtvlheGk 219
                  a   +++++ +eevl+ ++  e+ + +  ++Ls G k ++ +++ ++ ep+llllDeP+  + +e  +  ++ l +l++  ++ vv hD +f++e+ + +t   +G 
  MMETSP1137-20121227|4734_1 355 KAPEGRQVDSIVEEVLSRVNFPEEFKsTYVNSLSGGWKMRMSVAISMMHEPELLLLDEPTNHLDREAIDWLTNHLLSLKG-VTIAVVSHDYDFIDEVCTDITHYDNGG 461
                 44445667788999*****9988765156899***********************************9999999999975.799*****************9887775 PP

  == domain 3    score: 18.3 bits;  conditional E-value: 5.4e-06
   TIGR03411  17 alndlslsveegelrviiGpnGaGkttllDvitGktrpdeGs 58 
                  ln+++ +++ g+  vi+G nG+Gk+t+l +++G  +p+eG 
  MMETSP1137-20121227|4734_1 598 ILNKVEATLTLGSRAVIVGGNGSGKSTFLKLLIGDLEPEEGI 639
                 58999999999****************************995 PP

  == domain 4    score: 12.5 bits;  conditional E-value: 0.00031
   TIGR03411 140 kaglLshGqkqwLeigmllvqepkllllDePvaGmtdeetektaellkelakersvvvvehDmefvrelaekvtvlheGkvl 221
                 k  ++s Gq+q+L i   +  +p+++ lDeP+  + ++  +      k+   + +vv v  +  fv+e++++  v+++Gkv 
  MMETSP1137-20121227|4734_1 795 KIRQMSGGQRQRLVICAAFWSKPHVIALDEPTNYLDNDSVAX-----KD--FKGAVVTVSENEAFVAEISNEKWVVEDGKVT 869
                 45689**************************98876554332.....33..3456777788888888888888888888876 PP

>> TIGR01842  type_I_sec_PrtD: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.5   0.0    0.0023      0.13     314     363 ..     269     318 ..     238     324 .. 0.73
   2 !   25.8   0.0   1.3e-08   7.7e-07     453     518 ..     385     448 ..     373     460 .. 0.89
   3 !   24.6   0.0   3.1e-08   1.8e-06     317     373 ..     582     638 ..     574     641 .. 0.94
   4 !   26.7   0.0   7.3e-09   4.2e-07     453     489 ..     797     833 ..     773     872 .. 0.74

  Alignments for each domain:
  == domain 1    score: 8.5 bits;  conditional E-value: 0.0023
   TIGR01842 314 egelevenvslvppeekkktlkgisfalkaGealaiiGpsgsGkssLarl 363
                 ++  +++  ++  + + +  l++ +++ + G+  ++iG+ g+Gk++L   
  MMETSP1137-20121227|4734_1 269 DKDFALDMQNIILAFAGRVLLRKADVRFERGHRYGLIGQNGTGKTTLLNR 318
                 44444444444445556689**************************9865 PP

  == domain 2    score: 25.8 bits;  conditional E-value: 1.3e-08
   TIGR01842 453 aaLsgGqrqRiaLaRalygdPklvvLDePnanLDeeGeqalakalkelkarkitvvvithrpslle 518
                 ++LsgG + R+++a  +  +P l++LDeP   LD e    l++ l +lk  ++t+ v++h    ++
  MMETSP1137-20121227|4734_1 385 NSLSGGWKMRMSVAISMMHEPELLLLDEPTNHLDREAIDWLTNHLLSLK--GVTIAVVSHDYDFID 448
                 58******************************************99886..788888898776665 PP

  == domain 3    score: 24.6 bits;  conditional E-value: 3.1e-08
   TIGR01842 317 levenvslvppeekkktlkgisfalkaGealaiiGpsgsGkssLarllvGvwlpasG 373
                 +++++vs+  pe+ +++l++++ +l+ G+  +i+G  gsGks+  +ll+G  +p++G
  MMETSP1137-20121227|4734_1 582 MTLKDVSFKYPETDRYILNKVEATLTLGSRAVIVGGNGSGKSTFLKLLIGDLEPEEG 638
                 78899*********************************************9999888 PP

  == domain 4    score: 26.7 bits;  conditional E-value: 7.3e-09
   TIGR01842 453 aaLsgGqrqRiaLaRalygdPklvvLDePnanLDeeG 489
                  ++sgGqrqR+ +  a++ +P+++ LDeP   LD++ 
  MMETSP1137-20121227|4734_1 797 RQMSGGQRQRLVICAAFWSKPHVIALDEPTNYLDNDS 833
                 579******************************9864 PP

>> TIGR02982  heterocyst_DevA: ABC exporter ATP-binding subunit, DevA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.0     0.094       5.5      21      52 ..     289     320 ..     284     325 .. 0.79
   2 !   39.9   0.0   1.3e-12   7.4e-11     116     217 ..     360     460 ..     345     463 .. 0.82
   3 !   11.6   0.0   0.00055     0.032      11      67 ..     589     645 ..     581     670 .. 0.75
   4 !   28.9   0.0   2.9e-09   1.7e-07     120     177 ..     776     834 ..     754     851 .. 0.83

  Alignments for each domain:
  == domain 1    score: 4.3 bits;  conditional E-value: 0.094
   TIGR02982  21 lfdinleiepgeiviltGpsGsGkttlltlig 52 
                 l + +++ e g    l G+ G+Gkttll+ ++
  MMETSP1137-20121227|4734_1 289 LRKADVRFERGHRYGLIGQNGTGKTTLLNRLA 320
                 55666777777777799***********8766 PP

  == domain 2    score: 39.9 bits;  conditional E-value: 1.3e-12
   TIGR02982 116 keakakaeelleavgleerld.ykpedlsgGqkqrvaiaralvarPklvladePtaaldkksgrevvellqklareqgttillvthdnril.dvadrivkmedG 217
                 ++  + +ee+l+ v + e+++  + + lsgG k r+++a +++++P+l+l dePt  ld+++   +  l ++l   +g+ti +v hd   + +v+  i + ++G
  MMETSP1137-20121227|4734_1 360 RQVDSIVEEVLSRVNFPEEFKsTYVNSLSGGWKMRMSVAISMMHEPELLLLDEPTNHLDREA---IDWLTNHLLSLKGVTIAVVSHDYDFIdEVCTDITHYDNG 460
                 5566778999*****99988626899*********************************986...445667778889**********86551588888888776 PP

  == domain 3    score: 11.6 bits;  conditional E-value: 0.00055
   TIGR02982  11 ygkgelrkqvlfdinleiepgeiviltGpsGsGkttlltligglrsvqeGelkvlgk 67 
                 +   e+ + +l++++ +++ g   ++ G  GsGk t+l l+ g  +  eG    +++
  MMETSP1137-20121227|4734_1 589 FKYPETDRYILNKVEATLTLGSRAVIVGGNGSGKSTFLKLLIGDLEPEEGIGAAWKH 645
                 445577899*****************************9877666667776555555 PP

  == domain 4    score: 28.9 bits;  conditional E-value: 2.9e-09
   TIGR02982 120 akaeelleavgleerldy.kpedlsgGqkqrvaiaralvarPklvladePtaaldkksg 177
                 a++ + l   g+++ l   k +++sgGq+qr+ i  a+ ++P+++  dePt  ld++s 
  MMETSP1137-20121227|4734_1 776 AEVLKHLADFGIDQTLAFgKIRQMSGGQRQRLVICAAFWSKPHVIALDEPTNYLDNDSV 834
                 4556677788888887753779*********************************9885 PP

>> TIGR00968  3a0106s01: sulfate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.9   0.0    0.0018       0.1       4      48 ..     277     321 ..     274     327 .. 0.88
   2 !   40.2   0.0   9.8e-13   5.7e-11      97     207 ..     352     460 ..     337     467 .. 0.86
   3 !   13.9   0.0   0.00011    0.0064       4      55 ..     585     638 ..     582     651 .. 0.83
   4 !   20.6   0.0   9.4e-07   5.4e-05     129     163 ..     797     831 ..     764     873 .. 0.88

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 0.0018
   TIGR00968   4 anvskrfGdfqalddvdlevktGslvallGpsGsGkstllrviaG 48 
                 +n+   f   + l + d+  + G+  +l+G  G+Gk+tll  +a 
  MMETSP1137-20121227|4734_1 277 QNIILAFAGRVLLRKADVRFERGHRYGLIGQNGTGKTTLLNRLAA 321
                 677778888899999*************************98886 PP

  == domain 2    score: 40.2 bits;  conditional E-value: 9.8e-13
   TIGR00968  97 leirkkdkakikakveellelvql.eklgdrypsqlsGGqrqrvalaralavepqvllldepfgaldakvrkelrawlrklhdevkvttvfvthdqeealevadrivvlekG 207
                 l+++  +  ++   vee+l+ v++ e++++ y + lsGG + r+++a ++  ep++llldep   ld +  + l + l  l+    vt  +v+hd++   ev  +i   ++G
  MMETSP1137-20121227|4734_1 352 LKMKAPEGRQVDSIVEEVLSRVNFpEEFKSTYVNSLSGGWKMRMSVAISMMHEPELLLLDEPTNHLDREAIDWLTNHLLSLK---GVTIAVVSHDYDFIDEVCTDITHYDNG 460
                 67777788889999******9998579****************************************766665555555554...589999*******99999999887776 PP

  == domain 3    score: 13.9 bits;  conditional E-value: 0.00011
   TIGR00968   4 anvskrfGdf..qalddvdlevktGslvallGpsGsGkstllrviaGlekpdsG 55 
                 ++vs ++ ++   +l++v+ ++  Gs   ++G  GsGkst+l+++ G  +p++G
  MMETSP1137-20121227|4734_1 585 KDVSFKYPETdrYILNKVEATLTLGSRAVIVGGNGSGKSTFLKLLIGDLEPEEG 638
                 566666655411589*****************************9998777776 PP

  == domain 4    score: 20.6 bits;  conditional E-value: 9.4e-07
   TIGR00968 129 sqlsGGqrqrvalaralavepqvllldepfgalda 163
                  q+sGGqrqr+ +  a+  +p+v+ ldep   ld 
  MMETSP1137-20121227|4734_1 797 RQMSGGQRQRLVICAAFWSKPHVIALDEPTNYLDN 831
                 69****************************99996 PP

>> TIGR03796  NHLM_micro_ABC1: NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.0      0.02       1.2     477     521 ..     273     315 ..     215     327 .. 0.77
   2 !   24.1   0.0   3.5e-08     2e-06     613     675 ..     384     447 ..     359     461 .. 0.78
   3 !   30.7   0.0   3.4e-10     2e-08     478     534 ..     582     638 ..     572     661 .. 0.94
   4 !   20.4   0.0   4.5e-07   2.6e-05     614     649 ..     797     832 ..     771     838 .. 0.87

  Alignments for each domain:
  == domain 1    score: 5.0 bits;  conditional E-value: 0.02
   TIGR03796 477 kvelrnvtfgysaleapliedfslslkpGqrvAlvGgsGsGksti 521
                 +++++n+  +++   + l+++ +++ + G+r  l+G+ G+Gk t+
  MMETSP1137-20121227|4734_1 273 ALDMQNIILAFA--GRVLLRKADVRFERGHRYGLIGQNGTGKTTL 315
                 567777777775..46899*************************7 PP

  == domain 2    score: 24.1 bits;  conditional E-value: 3.5e-08
   TIGR03796 613 ganlsGGqrqRleiARaLvknPsiLilDEatsaLDaetEkaiden.lrrRgctciivaHRLsti 675
                  + lsGG + R+ +A +++++P +L+lDE t  LD e+   ++++ l  +g+t+ +v+H    i
  MMETSP1137-20121227|4734_1 384 VNSLSGGWKMRMSVAISMMHEPELLLLDEPTNHLDREAIDWLTNHlLSLKGVTIAVVSHDYDFI 447
                 3569********************************9987776651678**********87666 PP

  == domain 3    score: 30.7 bits;  conditional E-value: 3.4e-10
   TIGR03796 478 velrnvtfgysaleapliedfslslkpGqrvAlvGgsGsGkstiaklvaGlyepwsG 534
                 ++l++v+f y ++++ ++++++ +l+ G+r  +vGg GsGkst  kl+ G  ep +G
  MMETSP1137-20121227|4734_1 582 MTLKDVSFKYPETDRYILNKVEATLTLGSRAVIVGGNGSGKSTFLKLLIGDLEPEEG 638
                 689***********************************************9999887 PP

  == domain 4    score: 20.4 bits;  conditional E-value: 4.5e-07
   TIGR03796 614 anlsGGqrqRleiARaLvknPsiLilDEatsaLDae 649
                 + +sGGqrqRl i  a  ++P ++ lDE t  LD  
  MMETSP1137-20121227|4734_1 797 RQMSGGQRQRLVICAAFWSKPHVIALDEPTNYLDND 832
                 679******************************975 PP

>> TIGR01288  nodI: nodulation ABC transporter NodI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.5   0.0    0.0002     0.011       2      47 ..     271     316 ..     270     324 .. 0.92
   2 !   34.3   0.0   4.6e-11   2.7e-09     110     211 ..     360     460 ..     347     470 .. 0.83
   3 !   13.5   0.0   9.7e-05    0.0056       9      59 ..     586     638 ..     580     651 .. 0.86
   4 !   19.6   0.0   1.4e-06   8.2e-05     113     168 ..     776     831 ..     764     836 .. 0.86

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 0.0002
   TIGR01288   2 dvaidlvgvsksygdkvvvndlsftiaagecfgllgpngagkstia 47 
                 d a+d+ ++  ++ ++v++ +      +g  +gl+g ng+gk+t+ 
  MMETSP1137-20121227|4734_1 271 DFALDMQNIILAFAGRVLLRKADVRFERGHRYGLIGQNGTGKTTLL 316
                 6899***************************************974 PP

  == domain 2    score: 34.3 bits;  conditional E-value: 4.6e-11
   TIGR01288 110 reieevipsllefarl.eskadvrvadlsggmkrrltlaralindpqllildepttgldpharhliwerlrsllargktilltthlmeeaerlcdrlcvleag 211
                 r++++++  +l    + e    + v +lsgg k r+++a +++ +p+ll+ldept  ld  a   + + l sl  +g ti + +h  +  + +c  +   ++g
  MMETSP1137-20121227|4734_1 360 RQVDSIVEEVLSRVNFpEEFKSTYVNSLSGGWKMRMSVAISMMHEPELLLLDEPTNHLDREAIDWLTNHLLSL--KGVTIAVVSHDYDFIDEVCTDITHYDNG 460
                 677777777776555425556789**************************************99888888776..899*******999999999888777766 PP

  == domain 3    score: 13.5 bits;  conditional E-value: 9.7e-05
   TIGR01288   9 gvsksy..gdkvvvndlsftiaagecfgllgpngagkstiarlvlglispdeg 59 
                 +vs  y   d+ ++n++  t++ g    ++g ng+gkst  +l++g   p+eg
  MMETSP1137-20121227|4734_1 586 DVSFKYpeTDRYILNKVEATLTLGSRAVIVGGNGSGKSTFLKLLIGDLEPEEG 638
                 555555335899**************************************998 PP

  == domain 4    score: 19.6 bits;  conditional E-value: 1.4e-06
   TIGR01288 113 eevipsllefarleskadvrvadlsggmkrrltlaralindpqllildepttgldp 168
                  ev+  l +f   ++ a  ++ ++sgg ++rl +++a+   p+++ ldept  ld 
  MMETSP1137-20121227|4734_1 776 AEVLKHLADFGIDQTLAFGKIRQMSGGQRQRLVICAAFWSKPHVIALDEPTNYLDN 831
                 3578899999999999999*********************************9996 PP

>> TIGR03522  GldA_ABC_ATP: gliding motility-associated ABC transporter ATP-binding subunit GldA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.0      0.07       4.1       8      46 ..     279     317 ..     272     322 .. 0.78
   2 !   32.6   0.0     2e-10   1.2e-08      95     202 ..     351     454 ..     335     463 .. 0.77
   3 !   20.2   0.0   1.2e-06   7.2e-05       5      85 ..     584     666 ..     581     702 .. 0.85
   4 !   21.8   0.0     4e-07   2.3e-05     114     168 ..     778     833 ..     748     846 .. 0.85

  Alignments for each domain:
  == domain 1    score: 4.6 bits;  conditional E-value: 0.07
   TIGR03522   8 lsklygkqkaldevsfeaekGeivGflGPnGaGkstlmk 46 
                 +   ++ +  l +   + e+G+  G++G nG+Gk+tl+ 
  MMETSP1137-20121227|4734_1 279 IILAFAGRVLLRKADVRFERGHRYGLIGQNGTGKTTLLN 317
                 55556666667777788899****************986 PP

  == domain 2    score: 32.6 bits;  conditional E-value: 2e-10
   TIGR03522  95 ylefsaalyklkgrklkkrveelielvGlkaeqh.kkigalskGyrqrvGlakallhdPkvlildePttGldPnqlveirevikeiakdktvilsthimqevealcdrv 202
                 +l+++a     +gr++++ vee++ +v + +e     ++ ls G++ r+ +a +++h+P++l+ldePt  ld + +  + + + ++ k  t+ + +h    ++ +c ++
  MMETSP1137-20121227|4734_1 351 FLKMKA----PEGRQVDSIVEEVLSRVNFPEEFKsTYVNSLSGGWKMRMSVAISMMHEPELLLLDEPTNHLDREAIDWLTNHLLSL-KGVTIAVVSHDYDFIDEVCTDI 454
                 554444....46888999999****9998766431469**********************************99887777666665.4556666667777777777666 PP

  == domain 3    score: 20.2 bits;  conditional E-value: 1.2e-06
   TIGR03522   5 vsdlskly..gkqkaldevsfeaekGeivGflGPnGaGkstlmkiltgylkadsGsvavagedvlknslevrkniGylPehnP 85 
                 ++d+s +y  + +++l++v  +   G+    +G nG+Gkst +k+l g l+++ G  a  ++ +l+ s  +++++ +l +h  
  MMETSP1137-20121227|4734_1 584 LKDVSFKYpeTDRYILNKVEATLTLGSRAVIVGGNGSGKSTFLKLLIGDLEPEEGIGAAWKHHALRLSYVAQQSLHHLEDHVT 666
                 5677777733457899**************************************************************99964 PP

  == domain 4    score: 21.8 bits;  conditional E-value: 4e-07
   TIGR03522 114 veelielvGlka.eqhkkigalskGyrqrvGlakallhdPkvlildePttGldPnq 168
                 v + ++  G+ +  ++ ki ++s G rqr  + +a+  +P+v+ ldePt  ld + 
  MMETSP1137-20121227|4734_1 778 VLKHLADFGIDQtLAFGKIRQMSGGQRQRLVICAAFWSKPHVIALDEPTNYLDNDS 833
                 55556666664415799***********************************9765 PP

>> TIGR01187  potA: polyamine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.0      0.17       9.8       1      18 [.     304     321 ..     304     327 .. 0.89
   2 !   42.9   0.0   1.2e-13   6.7e-12      67     161 ..     352     444 ..     347     452 .. 0.92
   3 ?    5.3   0.1     0.032       1.9       1      25 [.     614     638 ..     614     641 .. 0.90
   4 !   26.2   0.0   1.4e-08   8.1e-07      92     133 ..     790     831 ..     770     836 .. 0.89

  Alignments for each domain:
  == domain 1    score: 3.0 bits;  conditional E-value: 0.17
   TIGR01187   1 lLGpsGsGkttlLrllaG 18 
                 l+G  G+GkttlL  la 
  MMETSP1137-20121227|4734_1 304 LIGQNGTGKTTLLNRLAA 321
                 789**********99985 PP

  == domain 2    score: 42.9 bits;  conditional E-value: 1.2e-13
   TIGR01187  67 LkmrkvpkaeikervkeaLelvql.eefakrkpsqlsGGqrqrvalaravvkkPkiLLlDeplsaLDkkLrdqmqlelkalqeklGitvvlvthDq 161
                 Lkm+  +  ++++ v+e+L+ v++ eef + +++ lsGG + r+++a +++++P++LLlDep   LD++  d + + l +l+   G+t+ +v hD 
  MMETSP1137-20121227|4734_1 352 LKMKAPEGRQVDSIVEEVLSRVNFpEEFKSTYVNSLSGGWKMRMSVAISMMHEPELLLLDEPTNHLDREAIDWLTNHLLSLK---GVTIAVVSHDY 444
                 8999999999*************96789999************************************999999999888876...9********95 PP

  == domain 3    score: 5.3 bits;  conditional E-value: 0.032
   TIGR01187   1 lLGpsGsGkttlLrllaGleeldsG 25 
                 ++G  GsGk+t L+ll G  e+++G
  MMETSP1137-20121227|4734_1 614 IVGGNGSGKSTFLKLLIGDLEPEEG 638
                 6799**************9888887 PP

  == domain 4    score: 26.2 bits;  conditional E-value: 1.4e-08
   TIGR01187  92 efakrkpsqlsGGqrqrvalaravvkkPkiLLlDeplsaLDk 133
                 ++a  k+ q+sGGqrqr+ +  a   kP+++ lDep   LD+
  MMETSP1137-20121227|4734_1 790 TLAFGKIRQMSGGQRQRLVICAAFWSKPHVIALDEPTNYLDN 831
                 5667799******************************99996 PP

>> TIGR03269  met_CoM_red_A2: methyl coenzyme M reductase system, component A2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0   7.3e-06   0.00042       2      48 ..     275     321 ..     274     348 .. 0.86
   2 !   30.7   0.0   4.4e-10   2.5e-08     421     502 ..     380     458 ..     363     472 .. 0.86
   3 !   13.9   0.0   5.6e-05    0.0032     276     339 ..     578     638 ..     565     643 .. 0.89
   4 !   14.0   0.0     5e-05    0.0029     167     203 ..     797     833 ..     787     872 .. 0.62

  Alignments for each domain:
  == domain 1    score: 16.8 bits;  conditional E-value: 7.3e-06
   TIGR03269   2 evenltkkfdglevlknisleleeGevlGilGksGaGksvllhllrG 48 
                 +++n++ +f g   l++ ++++e G+  G++G+ G+Gk+ ll+ l  
  MMETSP1137-20121227|4734_1 275 DMQNIILAFAGRVLLRKADVRFERGHRYGLIGQNGTGKTTLLNRLAA 321
                 679***************************************98854 PP

  == domain 2    score: 30.7 bits;  conditional E-value: 4.4e-10
   TIGR03269 421 ldklpdelseGerhrvalaqvlikeprivildeptGtmdpitkvkvaesilkareeleetfvivshdmdfvlevcdraalmr 502
                    + + ls G + r+++a  +++ep +++ldept  +d  +   +++ +l  +   + t  +vshd df+ evc  ++   
  MMETSP1137-20121227|4734_1 380 KSTYVNSLSGGWKMRMSVAISMMHEPELLLLDEPTNHLDREAIDWLTNHLLSLK---GVTIAVVSHDYDFIDEVCTDITHYD 458
                 5678999********************************999999999888765...57999*************8776555 PP

  == domain 3    score: 13.9 bits;  conditional E-value: 5.6e-05
   TIGR03269 276 gediikvkdvskryisvdrGvvkavdnvslevkekeifGlvGtsGaGkttlskilaGvleptsG 339
                 +++++ +kdvs +y   dr +++ v++ +l++  + +  +vG  G+Gk+t  k+l+G lep +G
  MMETSP1137-20121227|4734_1 578 RKPVMTLKDVSFKYPETDRYILNKVEA-TLTLGSRAV--IVGGNGSGKSTFLKLLIGDLEPEEG 638
                 68999****************999975.677777776..8*********************998 PP

  == domain 4    score: 14.0 bits;  conditional E-value: 5e-05
   TIGR03269 167 rdlsGGekqrvvlarqlakeplllladeptGtldpkt 203
                 r++sGG++qr+v+   +  +p ++  dept  ld  +
  MMETSP1137-20121227|4734_1 797 RQMSGGQRQRLVICAAFWSKPHVIALDEPTNYLDNDS 833
                 5666666666666666666666666666666666543 PP

>> TIGR02204  MsbA_rel: ABC transporter, permease/ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   0.0      0.02       1.2     338     386 ..     274     319 ..     228     322 .. 0.80
   2 !   20.2   0.0   7.5e-07   4.3e-05     476     533 ..     386     442 ..     373     460 .. 0.83
   3 !   26.6   0.0   8.3e-09   4.8e-07     322     395 ..     566     638 ..     536     641 .. 0.90
   4 !   20.5   0.0     6e-07   3.4e-05     474     512 ..     796     834 ..     754     852 .. 0.78

  Alignments for each domain:
  == domain 1    score: 5.5 bits;  conditional E-value: 0.02
   TIGR02204 338 iefeevkfayParpdqkaldgldltvrpGetvalvGPsGaGkstllell 386
                 + ++++ +a+  r     l++ d++ + G++  l+G  G Gk+tll+ l
  MMETSP1137-20121227|4734_1 274 LDMQNIILAFAGRV---LLRKADVRFERGHRYGLIGQNGTGKTTLLNRL 319
                 55566666666665...799999**********************9855 PP

  == domain 2    score: 20.2 bits;  conditional E-value: 7.5e-07
   TIGR02204 476 tLsGGqkqriaiarailkdapiLLLdeatsaLdaeseqlvqqaleelmkgrttlviah 533
                 +LsGG k r+++a +++++  +LLLde t+ Ld e+ + + + l +l kg t  v++h
  MMETSP1137-20121227|4734_1 386 SLSGGWKMRMSVAISMMHEPELLLLDEPTNHLDREAIDWLTNHLLSL-KGVTIAVVSH 442
                 79*******************************99988777777655.5566666666 PP

  == domain 3    score: 26.6 bits;  conditional E-value: 8.3e-09
   TIGR02204 322 kaPaqpkalpakvrgeiefeevkfayParpdqkaldgldltvrpGetvalvGPsGaGkstllelllrfydPqsG 395
                   P +p+ + +  +  +++++v+f+yP+ +d+  l++++ t+  G +  +vG  G+Gkst l+ll+   +P++G
  MMETSP1137-20121227|4734_1 566 PDPGKPEGIRTFRKPVMTLKDVSFKYPE-TDRYILNKVEATLTLGSRAVIVGGNGSGKSTFLKLLIGDLEPEEG 638
                 567778888888888899*********8.579*********************************999999888 PP

  == domain 4    score: 20.5 bits;  conditional E-value: 6e-07
   TIGR02204 474 gvtLsGGqkqriaiarailkdapiLLLdeatsaLdaese 512
                   ++sGGq+qr+ i  a   +  ++ Lde t+ Ld +s 
  MMETSP1137-20121227|4734_1 796 IRQMSGGQRQRLVICAAFWSKPHVIALDEPTNYLDNDSV 834
                 4579*******************************9874 PP

>> TIGR02769  nickel_nikE: nickel import ATP-binding protein NikE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   0.0     0.013      0.73      25      54 ..     287     316 ..     275     322 .. 0.85
   2 !   30.9   0.0   6.7e-10   3.9e-08     129     227 ..     365     460 ..     346     470 .. 0.85
   3 !   16.0   0.0   2.3e-05    0.0014      21      66 ..     593     638 ..     581     656 .. 0.88
   4 !   18.6   0.0   3.9e-06   0.00022     132     183 ..     780     831 ..     771     869 .. 0.85

  Alignments for each domain:
  == domain 1    score: 7.1 bits;  conditional E-value: 0.013
   TIGR02769  25 avldnvslsleeGetvallGrsGaGkstla 54 
                  +l + ++  e+G+  +l+G+ G+Gk+tl 
  MMETSP1137-20121227|4734_1 287 VLLRKADVRFERGHRYGLIGQNGTGKTTLL 316
                 5688999*********************84 PP

  == domain 2    score: 30.9 bits;  conditional E-value: 6.7e-10
   TIGR02769 129 riaellelvelrsevldklPrqlsGGqlqriniaralavePklivldeavsnldlvlqasilellkklkqefGlaylfithdlrlvqkfaqrvlvldeG 227
                  ++e+l+ v++++e    + + lsGG   r+++a ++  eP+l++lde    ld+     + +    l    G+++ +++hd   +++++  +   d+G
  MMETSP1137-20121227|4734_1 365 IVEEVLSRVNFPEEFKSTYVNSLSGGWKMRMSVAISMMHEPELLLLDEPTNHLDREAIDWLTNH---LLSLKGVTIAVVSHDYDFIDEVCTDITHYDNG 460
                 46799*************************************************9765555555...555569*******************9999987 PP

  == domain 3    score: 16.0 bits;  conditional E-value: 2.3e-05
   TIGR02769  21 kqrkavldnvslsleeGetvallGrsGaGkstlarlllGlekPakG 66 
                 ++ + +l++v+ +l  G    ++G  G+Gkst+ +ll+G  +P++G
  MMETSP1137-20121227|4734_1 593 ETDRYILNKVEATLTLGSRAVIVGGNGSGKSTFLKLLIGDLEPEEG 638
                 566789*********************************9999988 PP

  == domain 4    score: 18.6 bits;  conditional E-value: 3.9e-06
   TIGR02769 132 ellelvelrsevldklPrqlsGGqlqriniaralavePklivldeavsnldl 183
                 + l   ++++  +  + rq+sGGq qr+ i  a+  +P++i lde    ld 
  MMETSP1137-20121227|4734_1 780 KHLADFGIDQTLAFGKIRQMSGGQRQRLVICAAFWSKPHVIALDEPTNYLDN 831
                 556666777777777889***************************9999985 PP

>> TIGR02203  MsbA_lipidA: lipid A export permease/ATP-binding protein MsbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.8   0.0    0.0073      0.42     341     379 ..     283     319 ..     256     322 .. 0.83
   2 !   15.7   0.0   1.5e-05   0.00084     470     527 ..     386     442 ..     380     459 .. 0.83
   3 !   27.0   0.0   5.6e-09   3.2e-07     332     388 ..     582     638 ..     552     660 .. 0.92
   4 !   22.2   0.0   1.6e-07     9e-06     459     505 ..     786     833 ..     757     839 .. 0.83

  Alignments for each domain:
  == domain 1    score: 6.8 bits;  conditional E-value: 0.0073
   TIGR02203 341 ypgddrealdsislkveaGevvalvGrsGsGkstlvnll 379
                 +   +r  l++ +++ e G++  l+G+ G Gk+tl+n l
  MMETSP1137-20121227|4734_1 283 FA--GRVLLRKADVRFERGHRYGLIGQNGTGKTTLLNRL 319
                 44..45679999999********************9865 PP

  == domain 2    score: 15.7 bits;  conditional E-value: 1.5e-05
   TIGR02203 470 kLsGGqRqRlaiaRallkdaPiLiLDeatsaLDneseRlvqaaLerlmkgRttlviah 527
                  LsGG + R+++a +++++  +L+LDe t  LD e+   + + L  l kg t  v++h
  MMETSP1137-20121227|4734_1 386 SLSGGWKMRMSVAISMMHEPELLLLDEPTNHLDREAIDWLTNHLLSL-KGVTIAVVSH 442
                 69*********************************877776666655.4556666666 PP

  == domain 3    score: 27.0 bits;  conditional E-value: 5.6e-09
   TIGR02203 332 vefrnvtfrypgddrealdsislkveaGevvalvGrsGsGkstlvnllpRFyepdsG 388
                 + +++v+f+yp++dr +l++++ +++ G +  +vG  GsGkst ++ll   +ep++G
  MMETSP1137-20121227|4734_1 582 MTLKDVSFKYPETDRYILNKVEATLTLGSRAVIVGGNGSGKSTFLKLLIGDLEPEEG 638
                 57899*******************************************999999887 PP

  == domain 4    score: 22.2 bits;  conditional E-value: 1.6e-07
   TIGR02203 459 GldtevG.engskLsGGqRqRlaiaRallkdaPiLiLDeatsaLDnes 505
                 G+d+++   +  ++sGGqRqRl i  a+     ++ LDe t  LDn+s
  MMETSP1137-20121227|4734_1 786 GIDQTLAfGKIRQMSGGQRQRLVICAAFWSKPHVIALDEPTNYLDNDS 833
                 66666542355689********************************98 PP

>> TIGR02324  CP_lyasePhnL: phosphonate C-P lyase system protein PhnL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   0.0     0.011      0.65      23      54 ..     288     319 ..     263     335 .. 0.77
   2 !   32.0   0.0   3.1e-10   1.8e-08     126     210 ..     363     445 ..     348     457 .. 0.80
   3 !   16.2   0.0   2.1e-05    0.0012      22      66 ..     597     641 ..     587     677 .. 0.81
   4 !   16.6   0.0   1.5e-05   0.00088     117     184 ..     765     833 ..     754     845 .. 0.82

  Alignments for each domain:
  == domain 1    score: 7.2 bits;  conditional E-value: 0.011
   TIGR02324  23 vlkevsleveaGelvalsGksGaGkstllksl 54 
                  l++ +++ e G+   l+G+ G+Gk tll  l
  MMETSP1137-20121227|4734_1 288 LLRKADVRFERGHRYGLIGQNGTGKTTLLNRL 319
                 46777888999******************887 PP

  == domain 2    score: 32.0 bits;  conditional E-value: 3.1e-10
   TIGR02324 126 rakakellarlniperLWslaPatfsGGekqRvniaraliadrPiLLLdePtasLdaanrkvvvelikeakargaaligifhdee 210
                  + ++e+l+r+n pe   s   +  sGG k R+ +a +++ +  +LLLdePt  Ld   ++   + + ++k  g+++  + hd +
  MMETSP1137-20121227|4734_1 363 DSIVEEVLSRVNFPEEFKSTYVNSLSGGWKMRMSVAISMMHEPELLLLDEPTNHLDREAIDWLTNHLLSLK--GVTIAVVSHDYD 445
                 566899***********************************8888999*******9999988777776665..556555667644 PP

  == domain 3    score: 16.2 bits;  conditional E-value: 2.1e-05
   TIGR02324  22 pvlkevsleveaGelvalsGksGaGkstllkslyanYlpesgril 66 
                  +l++v+ +++ G   ++ G  G+Gkst+lk l ++  pe g   
  MMETSP1137-20121227|4734_1 597 YILNKVEATLTLGSRAVIVGGNGSGKSTFLKLLIGDLEPEEGIGA 641
                 578999*********************************988643 PP

  == domain 4    score: 16.6 bits;  conditional E-value: 1.5e-05
   TIGR02324 117 elGve.reearakakellarlniperLWslaPatfsGGekqRvniaraliadrPiLLLdePtasLdaan 184
                 e G++ r +++a++ + la + i + L        sGG +qR+ i  a+ ++  ++ LdePt  Ld+  
  MMETSP1137-20121227|4734_1 765 ESGMAiRPITEAEVLKHLADFGIDQTLAFGKIRQMSGGQRQRLVICAAFWSKPHVIALDEPTNYLDNDS 833
                 4555523456777888889999999998888899*****************777889********9865 PP

>> TIGR03005  ectoine_ehuA: ectoine/hydroxyectoine ABC transporter, ATP-binding protein EhuA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.4   0.0    0.0084      0.48      10      46 ..     283     319 ..     274     326 .. 0.82
   2 !   31.3   0.0   4.2e-10   2.4e-08     140     232 ..     380     467 ..     353     477 .. 0.84
   3 !   11.9   0.0   0.00036     0.021      14      48 ..     597     631 ..     582     661 .. 0.85
   4 !   19.8   0.0   1.3e-06   7.7e-05     145     182 ..     797     834 ..     759     840 .. 0.87

  Alignments for each domain:
  == domain 1    score: 7.4 bits;  conditional E-value: 0.0084
   TIGR03005  10 fgeltvldglelevaaGekvaliGpsGsGkstilril 46 
                 f    +l ++++  ++G++  liG  G+Gk+t+l  l
  MMETSP1137-20121227|4734_1 283 FAGRVLLRKADVRFERGHRYGLIGQNGTGKTTLLNRL 319
                 55556788999999*******************9765 PP

  == domain 2    score: 31.3 bits;  conditional E-value: 4.2e-10
   TIGR03005 140 adalpaqlsGGqkqrvaiaralalrpkvllfdevtsaldpelveevlnvlrrlasetdltmllvthemgfarefadrvlffdkGkiveeGkpd 232
                 + ++   lsGG k r+++a ++  +p +ll+de+t  ld e ++ + n l  l   + +t+ +v+h+  f  e++  +  +d+G   e Gkp 
  MMETSP1137-20121227|4734_1 380 KSTYVNSLSGGWKMRMSVAISMMHEPELLLLDEPTNHLDREAIDWLTNHLLSL---KGVTIAVVSHDYDFIDEVCTDITHYDNGG--ELGKPC 467
                 3457789************************************9988866655...789***********************994..667775 PP

  == domain 3    score: 11.9 bits;  conditional E-value: 0.00036
   TIGR03005  14 tvldglelevaaGekvaliGpsGsGkstilrilmt 48 
                  +l+++e +++ G ++ ++G  GsGkst l++l+ 
  MMETSP1137-20121227|4734_1 597 YILNKVEATLTLGSRAVIVGGNGSGKSTFLKLLIG 631
                 48999**************************9985 PP

  == domain 4    score: 19.8 bits;  conditional E-value: 1.3e-06
   TIGR03005 145 aqlsGGqkqrvaiaralalrpkvllfdevtsaldpelv 182
                  q+sGGq+qr+ i  a+  +p+v+ +de+t  ld + v
  MMETSP1137-20121227|4734_1 797 RQMSGGQRQRLVICAAFWSKPHVIALDEPTNYLDNDSV 834
                 59********************************8766 PP

>> TIGR01978  sufC: FeS assembly ATPase SufC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   4.6e-05    0.0026       1      49 [.     274     322 ..     274     326 .. 0.93
   2 !   26.1   0.0     2e-08   1.1e-06     120     216 ..     363     456 ..     345     465 .. 0.89
   3 !   21.6   0.0   4.5e-07   2.6e-05      11      50 ..     594     633 ..     582     646 .. 0.87
   4 !    7.5   0.0    0.0088      0.51     145     181 ..     799     835 ..     768     869 .. 0.83

  Alignments for each domain:
  == domain 1    score: 15.0 bits;  conditional E-value: 4.6e-05
   TIGR01978   1 LkikdlhvsvedkeiLkglnlevkkGevhaimGpnGsGkstLskvlagh 49 
                 L+++++++  + + +L++ ++  ++G+ + ++G+nG+Gk tL + la +
  MMETSP1137-20121227|4734_1 274 LDMQNIILAFAGRVLLRKADVRFERGHRYGLIGQNGTGKTTLLNRLAAK 322
                 67899999***********************************999876 PP

  == domain 2    score: 26.1 bits;  conditional E-value: 2e-08
   TIGR01978 120 ekllkeklelleldeelleRslneGfsGGekkrneilqlallePklaiLDeiDsGlDvDalkivaegvnklreeekalliithyerllelikPdvvh 216
                  + ++e l+ ++++ee+ + ++n+  sGG k r+ +   ++ eP+l +LDe    lD +a+  +++++ +l+    ++ +++h   +++++  d  h
  MMETSP1137-20121227|4734_1 363 DSIVEEVLSRVNFPEEFKSTYVNS-LSGGWKMRMSVAISMMHEPELLLLDEPTNHLDREAIDWLTNHLLSLKG--VTIAVVSHDYDFIDEVCTDITH 456
                 567899999*************96.9****************************************9988876..678899**99999999888766 PP

  == domain 3    score: 21.6 bits;  conditional E-value: 4.5e-07
   TIGR01978  11 edkeiLkglnlevkkGevhaimGpnGsGkstLskvlaghe 50 
                  d+ iL++++ +++ G   +i+G nGsGkst  k l+g+ 
  MMETSP1137-20121227|4734_1 594 TDRYILNKVEATLTLGSRAVIVGGNGSGKSTFLKLLIGDL 633
                 4789********************************9985 PP

  == domain 4    score: 7.5 bits;  conditional E-value: 0.0088
   TIGR01978 145 fsGGekkrneilqlallePklaiLDeiDsGlDvDalk 181
                  sGG ++r  i+     +P+++ LDe    lD D++ 
  MMETSP1137-20121227|4734_1 799 MSGGQRQRLVICAAFWSKPHVIALDEPTNYLDNDSVA 835
                 7********************************9974 PP

>> TIGR03771  anch_rpt_ABC: anchored repeat-type ABC transporter, ATP-binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.8   0.0    0.0043      0.25       2      25 ..     295     318 ..     294     325 .. 0.87
   2 !   32.4   0.0   2.6e-10   1.5e-08      93     176 ..     365     447 ..     337     458 .. 0.83
   3 ?    3.8   0.0      0.15       8.5      10      36 ..     613     639 ..     605     666 .. 0.75
   4 !   25.0   0.0   4.9e-08   2.8e-06     105     149 ..     790     834 ..     774     852 .. 0.89

  Alignments for each domain:
  == domain 1    score: 8.8 bits;  conditional E-value: 0.0043
   TIGR03771   2 svdkGellgllGpnGaGkttllra 25 
                 + ++G+  gl+G nG+Gkttll  
  MMETSP1137-20121227|4734_1 295 RFERGHRYGLIGQNGTGKTTLLNR 318
                 56899999*************976 PP

  == domain 2    score: 32.4 bits;  conditional E-value: 2.6e-10
   TIGR03771  93 avadalervkl.teladrpvGelsGGqrqrvlvaralavkpslllldepftGldlpsqellvelfeelagegtailmtthdlaea 176
                  v++ l+rv++ +e+++  v  lsGG + r+ va ++  +p+lllldep   ld  +++ l++ + +l g   +i +++hd    
  MMETSP1137-20121227|4734_1 365 IVEEVLSRVNFpEEFKSTYVNSLSGGWKMRMSVAISMMHEPELLLLDEPTNHLDREAIDWLTNHLLSLKGV--TIAVVSHDYDFI 447
                 5889999999934678889********************************************99877655..555556665443 PP

  == domain 3    score: 3.8 bits;  conditional E-value: 0.15
   TIGR03771  10 gllGpnGaGkttllrailglikvakGs 36 
                  ++G nG+Gk+t+l+ ++g +++++G 
  MMETSP1137-20121227|4734_1 613 VIVGGNGSGKSTFLKLLIGDLEPEEGI 639
                 579***************999988873 PP

  == domain 4    score: 25.0 bits;  conditional E-value: 4.9e-08
   TIGR03771 105 eladrpvGelsGGqrqrvlvaralavkpslllldepftGldlpsq 149
                  la   + ++sGGqrqr+++  a+  kp+++ ldep   ld+ s 
  MMETSP1137-20121227|4734_1 790 TLAFGKIRQMSGGQRQRLVICAAFWSKPHVIALDEPTNYLDNDSV 834
                 56777899*****************************99998775 PP

>> TIGR00958  3a01208: antigen peptide transporter 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0         5   2.9e+02     504     524 ..     296     316 ..     288     320 .. 0.80
   2 !   19.7   0.0   7.9e-07   4.6e-05     617     678 ..     386     448 ..     377     463 .. 0.89
   3 !   27.6   0.0   3.1e-09   1.8e-07     478     536 ..     581     638 ..     570     640 .. 0.91
   4 !   21.4   0.0   2.5e-07   1.4e-05     616     651 ..     797     832 ..     787     858 .. 0.90

  Alignments for each domain:
  == domain 1    score: -2.8 bits;  conditional E-value: 5
   TIGR00958 504 lepGevvalVGPsGsGKStva 524
                  e G+   l+G +G GK t  
  MMETSP1137-20121227|4734_1 296 FERGHRYGLIGQNGTGKTTLL 316
                 56788889**********976 PP

  == domain 2    score: 19.7 bits;  conditional E-value: 7.9e-07
   TIGR00958 617 qlsgGqkqriAiARALvrkPrvLiLDeAtSALDa.eveqllqesksaksrtvlliahrLstve 678
                  lsgG k r+ +A  ++++P +L+LDe t  LD  +++ l ++  s k+ t+ ++ h    + 
  MMETSP1137-20121227|4734_1 386 SLSGGWKMRMSVAISMMHEPELLLLDEPTNHLDReAIDWLTNHLLSLKGVTIAVVSHDYDFID 448
                 69********************************55667777799***********9877765 PP

  == domain 3    score: 27.6 bits;  conditional E-value: 3.1e-09
   TIGR00958 478 kveFqdVsFsYPsrpdkpvlkdLtftlepGevvalVGPsGsGKStvaallenlYqPtgG 536
                 +++ +dVsF YP+  d+ +l+    tl+ G+   +VG +GsGKSt   ll    +P++G
  MMETSP1137-20121227|4734_1 581 VMTLKDVSFKYPE-TDRYILNKVEATLTLGSRAVIVGGNGSGKSTFLKLLIGDLEPEEG 638
                 5789********8.6899*******************************9988888887 PP

  == domain 4    score: 21.4 bits;  conditional E-value: 2.5e-07
   TIGR00958 616 sqlsgGqkqriAiARALvrkPrvLiLDeAtSALDae 651
                  q+sgGq+qr+ i  A   kP v+ LDe t  LD +
  MMETSP1137-20121227|4734_1 797 RQMSGGQRQRLVICAAFWSKPHVIALDEPTNYLDND 832
                 69********************************84 PP

>> TIGR02770  nickel_nikD: nickel import ATP-binding protein NikD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.0      0.26        15       5      27 ..     292     314 ..     288     327 .. 0.82
   2 !   39.9   0.0   1.1e-12   6.3e-11      93     202 ..     355     460 ..     347     477 .. 0.83
   3 ?    3.5   0.1      0.15       8.6       4      38 ..     601     635 ..     598     642 .. 0.81
   4 !   21.2   0.0   5.8e-07   3.3e-05     124     204 ..     797     868 ..     757     875 .. 0.83

  Alignments for each domain:
  == domain 1    score: 2.7 bits;  conditional E-value: 0.26
   TIGR02770   5 vnlslkrgkvlalvGesGsGksl 27 
                  ++   rg+  +l+G+ G+Gk++
  MMETSP1137-20121227|4734_1 292 ADVRFERGHRYGLIGQNGTGKTT 314
                 5677889**************96 PP

  == domain 2    score: 39.9 bits;  conditional E-value: 1.1e-12
   TIGR02770  93 ekls.kqakelivealeavgLeeaeevlkkypfelsGGmlqRvmialallleaplliaDePttdlDvvvqaevLklleelrekrglgillithDlgvvaeladevavmekG 202
                 + ++ +q  +++ e l++v+ +  ee  ++y   lsGG   R+ +a++++ e+ ll+ DePt  lD  +   +    ++l + +g++i +++hD   + e+  +++  ++G
  MMETSP1137-20121227|4734_1 355 KAPEgRQVDSIVEEVLSRVNFP--EEFKSTYVNSLSGGWKMRMSVAISMMHEPELLLLDEPTNHLDREAIDWLT---NHLLSLKGVTIAVVSHDYDFIDEVCTDITHYDNG 460
                 5555466677778899999998..8999**************************************87654443...5677789****************99999888877 PP

  == domain 3    score: 3.5 bits;  conditional E-value: 0.15
   TIGR02770   4 dvnlslkrgkvlalvGesGsGksltalailglldk 38 
                 +v+ +l  g    +vG  GsGks+  + ++g l++
  MMETSP1137-20121227|4734_1 601 KVEATLTLGSRAVIVGGNGSGKSTFLKLLIGDLEP 635
                 6777888888899**********988877777665 PP

  == domain 4    score: 21.2 bits;  conditional E-value: 5.8e-07
   TIGR02770 124 felsGGmlqRvmialallleaplliaDePttdlDvvvqaevLklleelrekrglgillithDlgvvaeladevavmekGki 204
                  ++sGG  qR++i  a  +++ ++  DePt  lD ++ a          +++  +++ ++ + + vae+ +e  v+e+Gk+
  MMETSP1137-20121227|4734_1 797 RQMSGGQRQRLVICAAFWSKPHVIALDEPTNYLDNDSVA---------XKDFKGAVVTVSENEAFVAEISNEKWVVEDGKV 868
                 49********************************98765.........467777888888888888888888888888887 PP

>> TIGR00955  3a01204: pigment precursor permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.4   0.0   0.00065     0.038      47      79 ..     295     327 ..     257     332 .. 0.83
   2 !   28.8   0.0   1.8e-09     1e-07     125     202 ..     351     422 ..     340     443 .. 0.75
   3 !    6.8   0.0    0.0078      0.45      36      73 ..     594     631 ..     572     687 .. 0.83
   4 !   20.8   0.0   4.6e-07   2.7e-05     162     201 ..     794     833 ..     769     837 .. 0.85

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 0.00065
   TIGR00955  47 vaksGellAvlGsSGaGKtTLlnalafrsekgl 79 
                  ++ G    ++G  G GKtTLln la ++ +g 
  MMETSP1137-20121227|4734_1 295 RFERGHRYGLIGQNGTGKTTLLNRLAAKDINGF 327
                 5677888889****************9988775 PP

  == domain 2    score: 28.8 bits;  conditional E-value: 1.8e-09
   TIGR00955 125 hlrlkrrltkkekrerveevleelgLrk.cadtrigvpgrvkglSgGerkRlalaselltdPilLfcDEPTsGLDsfsa 202
                  l++k+    ++   +veevl++++  +  + t +       +lSgG + R+++a  ++++P lL++DEPT  LD    
  MMETSP1137-20121227|4734_1 351 FLKMKA-PEGRQVDSIVEEVLSRVNFPEeFKSTYVN------SLSGGWKMRMSVAISMMHEPELLLLDEPTNHLDREAI 422
                 567776.24446678899999999985415566666......8********************************7655 PP

  == domain 3    score: 6.8 bits;  conditional E-value: 0.0078
   TIGR00955  36 pekellknvsGvaksGellAvlGsSGaGKtTLlnalaf 73 
                   + +l++v  ++  G    ++G+ G+GK+T l+ l  
  MMETSP1137-20121227|4734_1 594 TDRYILNKVEATLTLGSRAVIVGGNGSGKSTFLKLLIG 631
                 5678999**************************99865 PP

  == domain 4    score: 20.8 bits;  conditional E-value: 4.6e-07
   TIGR00955 162 grvkglSgGerkRlalaselltdPilLfcDEPTsGLDsfs 201
                 g+++ +SgG+r+Rl +     ++P+++ +DEPT  LD  s
  MMETSP1137-20121227|4734_1 794 GKIRQMSGGQRQRLVICAAFWSKPHVIALDEPTNYLDNDS 833
                 7899********************************9755 PP

>> TIGR01277  thiQ: thiamine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.8   0.0     0.001      0.06      15      45 ..     290     320 ..     274     328 .. 0.80
   2 !   23.9   0.0   9.8e-08   5.7e-06      95     203 ..     348     458 ..     338     462 .. 0.77
   3 !   14.1   0.0   9.6e-05    0.0056      15      53 ..     600     638 ..     582     655 .. 0.77
   4 !   16.2   0.0   2.2e-05    0.0013     104     162 ..     773     832 ..     758     873 .. 0.68

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 0.001
   TIGR01277  15 lefdlsveaGervailGesGaGkstllnlia 45 
                  + d+  e+G+r  ++G+ G+Gk+tlln +a
  MMETSP1137-20121227|4734_1 290 RKADVRFERGHRYGLIGQNGTGKTTLLNRLA 320
                 45678899********************887 PP

  == domain 2    score: 23.9 bits;  conditional E-value: 9.8e-08
   TIGR01277  95 lkpglklnavqkekvedvarqv....Gi.adylerlpeelsGGqrqrvalarclvrekpillldepfsaldpklreemlalvkkladekkltlllvthslsdaaaiasqvvvve 203
                 ++  lk++a + ++v+++ ++v       +++     ++lsGG + r+++a  +++e  +llldep   ld   re +  l ++l + k +t+ +v+h+ + + ++ + +   +
  MMETSP1137-20121227|4734_1 348 VRTFLKMKAPEGRQVDSIVEEVlsrvNFpEEFKSTYVNSLSGGWKMRMSVAISMMHEPELLLLDEPTNHLD---REAIDWLTNHLLSLKGVTIAVVSHDYDFIDEVCTDITHYD 458
                 55667777777777666555441111442456667889*******************************99...6777789999**************9887777777666555 PP

  == domain 3    score: 14.1 bits;  conditional E-value: 9.6e-05
   TIGR01277  15 lefdlsveaGervailGesGaGkstllnliaGflepasG 53 
                  + + ++  G r  i+G  G+Gkst+l+l+ G lep +G
  MMETSP1137-20121227|4734_1 600 NKVEATLTLGSRAVIVGGNGSGKSTFLKLLIGDLEPEEG 638
                 355667888***************************987 PP

  == domain 4    score: 16.2 bits;  conditional E-value: 2.2e-05
   TIGR01277 104 vqkekvedvarqvGiadyler.lpeelsGGqrqrvalarclvrekpillldepfsaldpk 162
                 + + +v +   + Gi++ l+     ++sGGqrqr+ +   +  +  ++ ldep   ld+ 
  MMETSP1137-20121227|4734_1 773 ITEAEVLKHLADFGIDQTLAFgKIRQMSGGQRQRLVICAAFWSKPHVIALDEPTNYLDND 832
                 55555556666789998887524589***************99999*********99975 PP

>> TIGR03265  PhnT2: putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.3   0.0    0.0092      0.53       5      52 ..     274     321 ..     270     327 .. 0.88
   2 !   34.7   0.0   4.1e-11   2.4e-09     102     196 ..     353     445 ..     346     460 .. 0.88
   3 ?    3.3   0.0      0.15       8.7      18      55 ..     597     634 ..     579     646 .. 0.79
   4 !   19.2   0.0   2.2e-06   0.00013     133     167 ..     797     831 ..     773     836 .. 0.92

  Alignments for each domain:
  == domain 1    score: 7.3 bits;  conditional E-value: 0.0092
   TIGR03265   5 lsieeiekefeaftalkdislsvkkgelvclLGPsGCGkttLLriiaG 52 
                 l++++i   f     l++ ++  ++g    l+G  G GkttLL  +a 
  MMETSP1137-20121227|4734_1 274 LDMQNIILAFAGRVLLRKADVRFERGHRYGLIGQNGTGKTTLLNRLAA 321
                 7788888889999999***************************98886 PP

  == domain 2    score: 34.7 bits;  conditional E-value: 4.1e-11
   TIGR03265 102 knkklkreevaerveelLelvglsgs.eekyPgqlsGGqqqrvaLaralalsPglLLLDePlsaLDakvrekLreelkklqrklgvttimvthdqe 196
                 k k  + ++v++ vee+L+ v++++  ++ y + lsGG + r+++a +++  P+lLLLDeP   LD    + L + l +l+   gvt  +v hd +
  MMETSP1137-20121227|4734_1 353 KMKAPEGRQVDSIVEEVLSRVNFPEEfKSTYVNSLSGGWKMRMSVAISMMHEPELLLLDEPTNHLDREAIDWLTNHLLSLK---GVTIAVVSHDYD 445
                 5566677889999**********9753889************************************999999998888886...899999***976 PP

  == domain 3    score: 3.3 bits;  conditional E-value: 0.15
   TIGR03265  18 talkdislsvkkgelvclLGPsGCGkttLLriiaGLek 55 
                  +l++++ +++ g    ++G  G Gk+t+L+++ G  +
  MMETSP1137-20121227|4734_1 597 YILNKVEATLTLGSRAVIVGGNGSGKSTFLKLLIGDLE 634
                 5799999999999999***************9887444 PP

  == domain 4    score: 19.2 bits;  conditional E-value: 2.2e-06
   TIGR03265 133 gqlsGGqqqrvaLaralalsPglLLLDePlsaLDa 167
                  q+sGGq+qr+ +  a+  +P+++ LDeP   LD 
  MMETSP1137-20121227|4734_1 797 RQMSGGQRQRLVICAAFWSKPHVIALDEPTNYLDN 831
                 59***************************999995 PP

>> TIGR01846  type_I_sec_HlyB: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.0      0.16       9.3     471     500 ..     287     316 ..     255     325 .. 0.73
   2 !   21.7   0.0     2e-07   1.1e-05     593     663 ..     386     456 ..     376     465 .. 0.87
   3 !   17.8   0.0     3e-06   0.00017     455     510 ..     581     636 ..     570     639 .. 0.89
   4 !   21.0   0.0   3.2e-07   1.8e-05     592     629 ..     797     834 ..     780     847 .. 0.91

  Alignments for each domain:
  == domain 1    score: 2.2 bits;  conditional E-value: 0.16
   TIGR01846 471 evlsnlsldikaGeviGivGpsGsGkstlt 500
                 ++l++  +  + G+  G++G+ G+Gk+tl 
  MMETSP1137-20121227|4734_1 287 VLLRKADVRFERGHRYGLIGQNGTGKTTLL 316
                 57888889999***************9974 PP

  == domain 2    score: 21.7 bits;  conditional E-value: 2e-07
   TIGR01846 593 alsGGqrqrialaralvanPrilildeatsaldyeseavimrnlreickgrtviiiahrlstvra.adrilv 663
                 +lsGG + r+++a +++ +P +l+lde t  ld e+ + + ++l ++ kg t+ +++h  + + + +  i  
  MMETSP1137-20121227|4734_1 386 SLSGGWKMRMSVAISMMHEPELLLLDEPTNHLDREAIDWLTNHLLSL-KGVTIAVVSHDYDFIDEvCTDITH 456
                 79****************************************99986.899*****9998877543555555 PP

  == domain 3    score: 17.8 bits;  conditional E-value: 3e-06
   TIGR01846 455 aiefenirfrykedspevlsnlsldikaGeviGivGpsGsGkstltkllqrlyvPe 510
                  ++++++ f+y e    +l++++  ++ G    ivG  GsGkst+ kll     Pe
  MMETSP1137-20121227|4734_1 581 VMTLKDVSFKYPETDRYILNKVEATLTLGSRAVIVGGNGSGKSTFLKLLIGDLEPE 636
                 5799*******************************************996655555 PP

  == domain 4    score: 21.0 bits;  conditional E-value: 3.2e-07
   TIGR01846 592 aalsGGqrqrialaralvanPrilildeatsaldyese 629
                  ++sGGqrqr+ +  a+ ++P+++ lde t  ld +s 
  MMETSP1137-20121227|4734_1 797 RQMSGGQRQRLVICAAFWSKPHVIALDEPTNYLDNDSV 834
                 579*******************************9995 PP

>> TIGR01193  bacteriocin_ABC: ABC-type bacteriocin transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.0      0.12       6.7     462     519 ..     262     318 ..     239     329 .. 0.80
   2 !   23.9   0.0   4.9e-08   2.8e-06     609     671 ..     384     446 ..     365     464 .. 0.87
   3 !   23.0   0.0   9.6e-08   5.5e-06     474     530 ..     582     639 ..     571     673 .. 0.81
   4 !   13.1   0.0   9.3e-05    0.0054     600     643 ..     786     830 ..     755     852 .. 0.81

  Alignments for each domain:
  == domain 1    score: 2.9 bits;  conditional E-value: 0.12
   TIGR01193 462 kkltelenlngdievndvsysyGygsevledislkikknekitlvGlsGsGkstlakl 519
                 + l+++    + ++++++   +  g+ +l + +++ ++ ++  l+G  G+Gk+tl   
  MMETSP1137-20121227|4734_1 262 QMLAKSGDKDFALDMQNIILAFA-GRVLLRKADVRFERGHRYGLIGQNGTGKTTLLNR 318
                 33456667778888888888774.7888999***********************9764 PP

  == domain 2    score: 23.9 bits;  conditional E-value: 4.9e-08
   TIGR01193 609 assisgGqkqrlalarallsdskvlildestsnldlltekkivenllklkdktiifvahrlsv 671
                   s+sgG k r+++a +++ + ++l+lde t +ld      + ++ll+lk  ti  v+h  + 
  MMETSP1137-20121227|4734_1 384 VNSLSGGWKMRMSVAISMMHEPELLLLDEPTNHLDREAIDWLTNHLLSLKGVTIAVVSHDYDF 446
                 579********************************************************8764 PP

  == domain 3    score: 23.0 bits;  conditional E-value: 9.6e-08
   TIGR01193 474 ievndvsysyGygs.evledislkikknekitlvGlsGsGkstlakllvkffqaesGe 530
                 ++++dvs++y  ++  +l++++ +++  ++ ++vG  GsGkst+ kll++  ++e+G 
  MMETSP1137-20121227|4734_1 582 MTLKDVSFKYPETDrYILNKVEATLTLGSRAVIVGGNGSGKSTFLKLLIGDLEPEEGI 639
                 5789******87651699********************************99998884 PP

  == domain 4    score: 13.1 bits;  conditional E-value: 9.3e-05
   TIGR01193 600 Gyqtelse.eassisgGqkqrlalarallsdskvlildestsnld 643
                 G +  l+  +  ++sgGq+qrl +  a+ s+ +v+ lde t  ld
  MMETSP1137-20121227|4734_1 786 GIDQTLAFgKIRQMSGGQRQRLVICAAFWSKPHVIALDEPTNYLD 830
                 55555554145689****************************998 PP

>> TIGR01184  ntrCD: nitrate ABC transporter, ATP-binding proteins C and D
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   0.0     0.025       1.5       4      32 ..     292     320 ..     289     327 .. 0.85
   2 !   30.3   0.0   1.1e-09   6.1e-08      92     176 ..     363     445 ..     346     461 .. 0.86
   3 ?    6.3   0.0     0.024       1.4       2      40 ..     600     638 ..     599     643 .. 0.87
   4 !   19.4   0.0   2.3e-06   0.00013      98     163 ..     781     849 ..     750     858 .. 0.76

  Alignments for each domain:
  == domain 1    score: 6.2 bits;  conditional E-value: 0.025
   TIGR01184   4 vdleikkgefislighsgcgkstllnlia 32 
                  d++ ++g    lig  g gk+tlln +a
  MMETSP1137-20121227|4734_1 292 ADVRFERGHRYGLIGQNGTGKTTLLNRLA 320
                 577788999999**************876 PP

  == domain 2    score: 30.3 bits;  conditional E-value: 1.1e-09
   TIGR01184  92 reiveehielvglre.aadkrpeqlsggmkqrvaiaralsirpklllldepfgaldaltreelqekllkiveearvtvlmvthdvd 176
                 ++ivee ++ v++ e  +  +++ lsgg k r+++a ++   p+lllldep   ld  + + l ++ll +   + vt+ +v+hd d
  MMETSP1137-20121227|4734_1 363 DSIVEEVLSRVNFPEeFKSTYVNSLSGGWKMRMSVAISMMHEPELLLLDEPTNHLDREAIDWLTNHLLSL---KGVTIAVVSHDYD 445
                 5799*******996515678899**********************************9999****99987...689999****977 PP

  == domain 3    score: 6.3 bits;  conditional E-value: 0.024
   TIGR01184   2 kdvdleikkgefislighsgcgkstllnliaglekptsg 40 
                 ++v+ ++  g    ++g  g gkst+l l+ g  +p +g
  MMETSP1137-20121227|4734_1 600 NKVEATLTLGSRAVIVGGNGSGKSTFLKLLIGDLEPEEG 638
                 67888899999999***************9998888776 PP

  == domain 4    score: 19.4 bits;  conditional E-value: 2.3e-06
   TIGR01184  98 hielvglre.aadkrpeqlsggmkqrvaiaralsirpklllldepfgald..altreelqekllkivee 163
                 h++  g+ +  a  ++ q+sgg +qr+ i  a+  +p+++ ldep   ld  +++ ++++  ++ + e+
  MMETSP1137-20121227|4734_1 781 HLADFGIDQtLAFGKIRQMSGGQRQRLVICAAFWSKPHVIALDEPTNYLDndSVAXKDFKGAVVTVSEN 849
                 44444554314567899****************************999862257777777777666655 PP

>> TIGR02142  modC_ABC: molybdate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   0.0     0.068       3.9      17      44 ..     293     320 ..     282     324 .. 0.81
   2 !   28.6   0.0   3.1e-09   1.8e-07     126     199 ..     381     451 ..     352     462 .. 0.80
   3 ?    5.0   0.1     0.045       2.6      18      52 ..     604     638 ..     594     642 .. 0.81
   4 !   23.1   0.0   1.4e-07   8.2e-06     120     210 ..     786     868 ..     756     875 .. 0.71

  Alignments for each domain:
  == domain 1    score: 4.4 bits;  conditional E-value: 0.068
   TIGR02142  17 dlelpgkgvtalFGrsGsGktslirlia 44 
                 d++ +   + +l G+ G+Gkt+l++ +a
  MMETSP1137-20121227|4734_1 293 DVRFERGHRYGLIGQNGTGKTTLLNRLA 320
                 45555557889*************9876 PP

  == domain 2    score: 28.6 bits;  conditional E-value: 3.1e-09
   TIGR02142 126 eRlpgkLsGGekqRvaigRAlLssPeLLlmDePLaaLDekrkkeilPyLerlsaelkiPilyvsHsldevarla 199
                 + ++++LsGG k R++++  ++ +PeLLl+DeP   LD++  + +  +L +l+    + i  vsH+ d +  + 
  MMETSP1137-20121227|4734_1 381 STYVNSLSGGWKMRMSVAISMMHEPELLLLDEPTNHLDREAIDWLTNHLLSLK---GVTIAVVSHDYDFIDEVC 451
                 56799*********************************988777777776665...567788999988776655 PP

  == domain 3    score: 5.0 bits;  conditional E-value: 0.045
   TIGR02142  18 lelpgkgvtalFGrsGsGktslirliaGLtrpdeg 52 
                  +l    ++ + G  GsGk+++++l+ G + p+eg
  MMETSP1137-20121227|4734_1 604 ATLTLGSRAVIVGGNGSGKSTFLKLLIGDLEPEEG 638
                 444444577899***************99999887 PP

  == domain 4    score: 23.1 bits;  conditional E-value: 1.4e-07
   TIGR02142 120 giehLle.RlpgkLsGGekqRvaigRAlLssPeLLlmDePLaaLDekrkkeilPyLerlsaelkiPilyvsHsldevarladrvvvledGrv 210
                 gi++ l   + +++sGG +qR  i  A  s+P+++ +DeP   LD+ + +          +++k  ++ vs +   va ++++  v+edG+v
  MMETSP1137-20121227|4734_1 786 GIDQTLAfGKIRQMSGGQRQRLVICAAFWSKPHVIALDEPTNYLDNDSVA---------XKDFKGAVVTVSENEAFVAEISNEKWVVEDGKV 868
                 5766554156799********************************87643.........345555555555555555555555555555555 PP

>> TIGR01186  proV: glycine betaine/L-proline transport ATP binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.0     0.091       5.3       9      42 ..     289     319 ..     283     325 .. 0.84
   2 !   35.3   0.0   2.6e-11   1.5e-09     110     192 ..     366     446 ..     338     464 .. 0.85
   3 !    9.2   0.1    0.0021      0.12      10      48 ..     600     638 ..     595     640 .. 0.88
   4 !   12.1   0.0   0.00029     0.017     129     161 ..     798     830 ..     779     850 .. 0.89

  Alignments for each domain:
  == domain 1    score: 3.9 bits;  conditional E-value: 0.091
   TIGR01186   9 vndvdleieeGeiiviiGlsGsGkstlvrllnrl 42 
                 ++++d+  e G  + +iG  G+Gk+tl+   nrl
  MMETSP1137-20121227|4734_1 289 LRKADVRFERGHRYGLIGQNGTGKTTLL---NRL 319
                 67899999******************75...444 PP

  == domain 2    score: 35.3 bits;  conditional E-value: 2.6e-11
   TIGR01186 110 alealklvdl.eeyedryPdelsGGmqqrvGlaralaaePdlllmdeafsaldPlirdelqdelvklqkklqktivfithdlde 192
                   e+l  v++ ee++ +y + lsGG + r+ +a ++  eP+lll+de+   ld    d l + l+ l+     ti  ++hd d 
  MMETSP1137-20121227|4734_1 366 VEEVLSRVNFpEEFKSTYVNSLSGGWKMRMSVAISMMHEPELLLLDEPTNHLDREAIDWLTNHLLSLK---GVTIAVVSHDYDF 446
                 56899*****99*****************************************999999999999987...679*******985 PP

  == domain 3    score: 9.2 bits;  conditional E-value: 0.0021
   TIGR01186  10 ndvdleieeGeiiviiGlsGsGkstlvrllnrliePtaG 48 
                 n+v+  ++ G   vi+G  GsGkst ++ll   +eP +G
  MMETSP1137-20121227|4734_1 600 NKVEATLTLGSRAVIVGGNGSGKSTFLKLLIGDLEPEEG 638
                 6777778889999*****************999999887 PP

  == domain 4    score: 12.1 bits;  conditional E-value: 0.00029
   TIGR01186 129 elsGGmqqrvGlaralaaePdlllmdeafsald 161
                 ++sGG++qr+ +  a+  +P ++ +de+   ld
  MMETSP1137-20121227|4734_1 798 QMSGGQRQRLVICAAFWSKPHVIALDEPTNYLD 830
                 89**************************99987 PP

>> TIGR03258  PhnT: 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.9   0.0   0.00016    0.0092      11      55 ..     276     320 ..     270     328 .. 0.90
   2 !   22.2   0.0   2.3e-07   1.3e-05     119     201 ..     366     445 ..     349     456 .. 0.81
   3 ?    6.0   0.0     0.019       1.1      20      63 ..     595     638 ..     581     646 .. 0.82
   4 !   18.9   0.0   2.4e-06   0.00014     136     172 ..     796     832 ..     748     838 .. 0.74

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 0.00016
   TIGR03258  11 leslrvaygarvvlddlsleieaGellallGksGsGkttllrava 55 
                 ++++ +a+ +rv+l +  +  e G    l+G+ G+Gkttll  +a
  MMETSP1137-20121227|4734_1 276 MQNIILAFAGRVLLRKADVRFERGHRYGLIGQNGTGKTTLLNRLA 320
                 5677789**********************************8766 PP

  == domain 2    score: 22.2 bits;  conditional E-value: 2.3e-07
   TIGR03258 119 vadalklvqls.daaarlpaqlsGGqqqrvalaralvvrpdvllldeplsaldaqlrasvveelkalhrelpeltvlyvthdrd 201
                 v + l  v++  ++ + + + lsGG + r+++a +++ +p++llldep   ld +    + + l +    l  +t+ +v+hd d
  MMETSP1137-20121227|4734_1 366 VEEVLSRVNFPeEFKSTYVNSLSGGWKMRMSVAISMMHEPELLLLDEPTNHLDREAIDWLTNHLLS----LKGVTIAVVSHDYD 445
                 56666667765145678999*********************************8877766666654....56789999999865 PP

  == domain 3    score: 6.0 bits;  conditional E-value: 0.019
   TIGR03258  20 arvvlddlsleieaGellallGksGsGkttllravaGfvkadGG 63 
                  r +l+++  ++  G    ++G  GsGk+t l+++ G ++++ G
  MMETSP1137-20121227|4734_1 595 DRYILNKVEATLTLGSRAVIVGGNGSGKSTFLKLLIGDLEPEEG 638
                 5789999999999999999****************999988765 PP

  == domain 4    score: 18.9 bits;  conditional E-value: 2.4e-06
   TIGR03258 136 paqlsGGqqqrvalaralvvrpdvllldeplsaldaq 172
                   q+sGGq+qr+ +  a+  +p+v+ ldep   ld +
  MMETSP1137-20121227|4734_1 796 IRQMSGGQRQRLVICAAFWSKPHVIALDEPTNYLDND 832
                 47*****************************999975 PP

>> TIGR02633  xylG: D-xylose ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.0   3.4e-05     0.002       2      49 ..     274     321 ..     273     328 .. 0.94
   2 !   22.0   0.0   1.8e-07     1e-05     121     218 ..     366     461 ..     356     467 .. 0.88
   3 !    8.1   0.0     0.003      0.18      16      49 ..     598     631 ..     581     647 .. 0.86
   4 !   13.6   0.0   6.4e-05    0.0037     395     437 ..     790     832 ..     766     873 .. 0.76

  Alignments for each domain:
  == domain 1    score: 14.5 bits;  conditional E-value: 3.4e-05
   TIGR02633   2 lemkgivkkfggvkaldnidlklraGeivslcGenGaGkstlmkvlsg 49 
                 l+m++i+  f g   l + d++ + G   +l G+nG+Gk+tl+  l++
  MMETSP1137-20121227|4734_1 274 LDMQNIILAFAGRVLLRKADVRFERGHRYGLIGQNGTGKTTLLNRLAA 321
                 89****************************************988765 PP

  == domain 2    score: 22.0 bits;  conditional E-value: 1.8e-07
   TIGR02633 121 akellrelkldasnvtrpvsdlGlGqqqlveiakalnkqvrllildepsaslteketeilldiirdlkakgvacvyishkleevkavsdtisvirdGq 218
                 ++e+l +++ +++ ++  v+ l +G +  + +a ++  +  ll+ldep+  l ++ ++ l + +  lk  ++a   +sh  + ++ v+  i+   +G 
  MMETSP1137-20121227|4734_1 366 VEEVLSRVNFPEEFKSTYVNSLSGGWKMRMSVAISMMHEPELLLLDEPTNHLDREAIDWLTNHLLSLKGVTIA--VVSHDYDFIDEVCTDITHYDNGG 461
                 578999999999999999********************************************99877755555..67***********9999777665 PP

  == domain 3    score: 8.1 bits;  conditional E-value: 0.003
   TIGR02633  16 aldnidlklraGeivslcGenGaGkstlmkvlsg 49 
                  l++++ +l  G    + G nG+Gkst++k+l g
  MMETSP1137-20121227|4734_1 598 ILNKVEATLTLGSRAVIVGGNGSGKSTFLKLLIG 631
                 5889999999999999***************976 PP

  == domain 4    score: 13.6 bits;  conditional E-value: 6.4e-05
   TIGR02633 395 aspdlpiarlsGGnqqkavlakllllnprvlildeptrGvdvG 437
                 +  +  i ++sGG++q+ v++  +  +p+v+ ldept  +d  
  MMETSP1137-20121227|4734_1 790 TLAFGKIRQMSGGQRQRLVICAAFWSKPHVIALDEPTNYLDND 832
                 556678999****************************998854 PP

>> TIGR02314  ABC_MetN: D-methionine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.0      0.11       6.1      26      49 ..     294     317 ..     278     323 .. 0.84
   2 !   35.9   0.0   1.5e-11   8.7e-10     112     217 ..     357     460 ..     347     468 .. 0.85
   3 ?    1.1   0.0      0.57        33      16      50 ..     596     628 ..     581     639 .. 0.76
   4 !   15.1   0.0   3.2e-05    0.0018     140     173 ..     798     831 ..     769     837 .. 0.90

  Alignments for each domain:
  == domain 1    score: 3.5 bits;  conditional E-value: 0.11
   TIGR02314  26 lfvpkgqifgvigasgagkstlir 49 
                 +   +g+ +g+ig  g+gk+tl+ 
  MMETSP1137-20121227|4734_1 294 VRFERGHRYGLIGQNGTGKTTLLN 317
                 5567899**************985 PP

  == domain 2    score: 35.9 bits;  conditional E-value: 1.5e-11
   TIGR02314 112 tpkekikrkvtellalvglsdk.kdsypsnlsggqkqrvaiaralasepkvllcdeatsaldpattqsilellkeinrrlgltillithemdvvkricdevavidkg 217
                     +++  v+e+l+ v + +  k +y   lsgg k r+++a ++  ep +ll de t  ld  +      l  ++    g+ti +++h+ d + ++c  ++  d+g
  MMETSP1137-20121227|4734_1 357 PEGRQVDSIVEEVLSRVNFPEEfKSTYVNSLSGGWKMRMSVAISMMHEPELLLLDEPTNHLDREAIDW---LTNHLLSLKGVTIAVVSHDYDFIDEVCTDITHYDNG 460
                 555689999*********98653889************************************866554...5555556679*******************9998887 PP

  == domain 3    score: 1.1 bits;  conditional E-value: 0.57
   TIGR02314  16 kkikaldnvslfvpkgqifgvigasgagkstlirc 50 
                 +    l++v+  +  g    ++g  g+gkst+++ 
  MMETSP1137-20121227|4734_1 596 R--YILNKVEATLTLGSRAVIVGGNGSGKSTFLKL 628
                 3..45899999999999999***********9875 PP

  == domain 4    score: 15.1 bits;  conditional E-value: 3.2e-05
   TIGR02314 140 nlsggqkqrvaiaralasepkvllcdeatsaldp 173
                 ++sggq+qr+ i  a+ s+p+v+  de t  ld 
  MMETSP1137-20121227|4734_1 798 QMSGGQRQRLVICAAFWSKPHVIALDEPTNYLDN 831
                 68****************************9996 PP

>> TIGR03415  ABC_choXWV_ATP: choline ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.0      0.18        10      30      68 ..     280     317 ..     268     327 .. 0.84
   2 !   29.5   0.0   1.3e-09   7.6e-08     132     241 ..     353     460 ..     347     475 .. 0.86
   3 ?    2.8   0.1      0.17       9.6      42      69 ..     601     628 ..     596     636 .. 0.81
   4 !    6.9   0.0    0.0095      0.55     161     196 ..     795     830 ..     742     858 .. 0.93

  Alignments for each domain:
  == domain 1    score: 2.7 bits;  conditional E-value: 0.18
   TIGR03415  30 ildktGlvlgvadasldveeGeilvlmGlsGsGkssllr 68 
                 il+ +G+vl  ++a ++ e+G    l+G  G+Gk++ll 
  MMETSP1137-20121227|4734_1 280 ILAFAGRVL-LRKADVRFERGHRYGLIGQNGTGKTTLLN 317
                 566677777.78999**********************95 PP

  == domain 2    score: 29.5 bits;  conditional E-value: 1.3e-09
   TIGR03415 132 elsGvakaerrkrveeqlelvgl.aeWadkkvgelsGGmqqrvGlarafateadillmdePfsaldPliraklqdellelqkklkktivfvshdldealklGnriaimegG 241
                  ++    +++ + vee l  v++ +e++ ++v+ lsGG + r+ +a ++  e ++ll+deP   ld      l + ll+l+     ti  vshd d    + + i+  ++G
  MMETSP1137-20121227|4734_1 353 KMKAPEGRQVDSIVEEVLSRVNFpEEFKSTYVNSLSGGWKMRMSVAISMMHEPELLLLDEPTNHLDREAIDWLTNHLLSLKG---VTIAVVSHDYDFIDEVCTDITHYDNG 460
                 5666666777888999******95689*****************************************99********9986...69*******99877777777766655 PP

  == domain 3    score: 2.8 bits;  conditional E-value: 0.17
   TIGR03415  42 dasldveeGeilvlmGlsGsGkssllra 69 
                 ++  +++ G  +v++G  GsGks++l+ 
  MMETSP1137-20121227|4734_1 601 KVEATLTLGSRAVIVGGNGSGKSTFLKL 628
                 555666778999************9985 PP

  == domain 4    score: 6.9 bits;  conditional E-value: 0.0095
   TIGR03415 161 kvgelsGGmqqrvGlarafateadillmdePfsald 196
                 k+ ++sGG +qr+ +  af  +  ++ +deP   ld
  MMETSP1137-20121227|4734_1 795 KIRQMSGGQRQRLVICAAFWSKPHVIALDEPTNYLD 830
                 77899**************************99988 PP

>> TIGR02323  CP_lyasePhnK: phosphonate C-P lyase system protein PhnK
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.7   0.0    0.0081      0.47      26      50 ..     298     322 ..     274     337 .. 0.84
   2 !    9.5   0.0    0.0023      0.13     127     197 ..     370     442 ..     336     447 .. 0.74
   3 !   12.3   0.0   0.00032     0.019       2      57 ..     580     639 ..     579     659 .. 0.75
   4 !   10.3   0.0    0.0014     0.078     127     171 ..     782     829 ..     770     845 .. 0.82

  Alignments for each domain:
  == domain 1    score: 7.7 bits;  conditional E-value: 0.0081
   TIGR02323  26 pGevlgivGesGsGkstllkalaar 50 
                  G+  g++G+ G+Gk+tll+ laa+
  MMETSP1137-20121227|4734_1 298 RGHRYGLIGQNGTGKTTLLNRLAAK 322
                 577889****************987 PP

  == domain 2    score: 9.5 bits;  conditional E-value: 0.0023
   TIGR02323 127 lekveidaari..kpaafsGGmqqrlqiarnlvtrprlvfm.eptGGlvsvqarllllrglvrelglaviivth 197
                 l++v+ +++      +++sGG + r+ +a +++ +p l+++ ept  l   +a   l+  l+   g+++ +v+h
  MMETSP1137-20121227|4734_1 370 LSRVNFPEEFKstYVNSLSGGWKMRMSVAISMMHEPELLLLdEPTNHLDR-EAIDWLTNHLLSLKGVTIAVVSH 442
                 566666553222256789**********************99***98743.34444555555555566555555 PP

  == domain 3    score: 12.3 bits;  conditional E-value: 0.00032
   TIGR02323   2 pllevselsksygskkgcr...vsf.lypGevlgivGesGsGkstllkalaarlladaGe 57 
                 p+++++++s +y ++  +    v+  l  G    ivG  GsGkst+lk l + l +++G 
  MMETSP1137-20121227|4734_1 580 PVMTLKDVSFKYPETDRYIlnkVEAtLTLGSRAVIVGGNGSGKSTFLKLLIGDLEPEEGI 639
                 5666666676776555443113444577788889**********************9984 PP

  == domain 4    score: 10.3 bits;  conditional E-value: 0.0014
   TIGR02323 127 lekveidaari..kpaafsGGmqqrlqiarnlvtrprlvfm.eptGGl 171
                 l +  id++    k +++sGG +qrl i  ++ ++p+++ + ept  l
  MMETSP1137-20121227|4734_1 782 LADFGIDQTLAfgKIRQMSGGQRQRLVICAAFWSKPHVIALdEPTNYL 829
                 55566676544567899**********************999**9866 PP

>> TIGR01271  CFTR_protein: cystic fibrosis transmembrane conductor regulator (CFTR)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.7   0.0    0.0036      0.21    1229    1265 ..     283     319 ..     253     336 .. 0.87
   2 !   11.9   0.0   9.7e-05    0.0056    1333    1392 ..     363     425 ..     337     452 .. 0.80
   3 !   15.0   0.0   1.2e-05   0.00067    1218    1271 ..     582     635 ..     577     659 .. 0.60
   4 ?    3.8   0.0     0.028       1.6     549     580 ..     799     830 ..     777     851 .. 0.67

  Alignments for each domain:
  == domain 1    score: 6.7 bits;  conditional E-value: 0.0036
   TIGR01271 1229 eagravlqdlsfsveagqrvgllgrtgsgkstllsal 1265
                   agr +l++     e g r gl+g+ g+gk+tll  l
  MMETSP1137-20121227|4734_1  283 FAGRVLLRKADVRFERGHRYGLIGQNGTGKTTLLNRL 319 
                  47999****************************9865 PP

  == domain 2    score: 11.9 bits;  conditional E-value: 9.7e-05
   TIGR01271 1333 ksvieqfpdkldfvlv.dggyv..lsnghkqlmclarsilskakillldepsafldpvtlqii 1392
                   s++e+   +++f  +    yv  ls g k  m +a s++    +llldep+ +ld  +++ +
  MMETSP1137-20121227|4734_1  363 DSIVEEVLSRVNFPEEfKSTYVnsLSGGWKMRMSVAISMMHEPELLLLDEPTNHLDREAIDWL 425 
                  677777777777765424556655899****************************97666555 PP

  == domain 3    score: 15.0 bits;  conditional E-value: 1.2e-05
   TIGR01271 1218 mtvkdltakyteagravlqdlsfsveagqrvgllgrtgsgkstllsallrllst 1271
                  mt+kd++ ky e+ r +l+++  ++  g r  ++g  gsgkst+l  l+  l+ 
  MMETSP1137-20121227|4734_1  582 MTLKDVSFKYPETDRYILNKVEATLTLGSRAVIVGGNGSGKSTFLKLLIGDLEP 635 
                  666666666666666666666666666666666666666666666655543333 PP

  == domain 4    score: 3.8 bits;  conditional E-value: 0.028
   TIGR01271 549 lsggqrarislaravykdadlylldspfsyld 580
                 +sggqr r+ ++ a +    +  ld p +yld
  MMETSP1137-20121227|4734_1 799 MSGGQRQRLVICAAFWSKPHVIALDEPTNYLD 830
                 55555555555555555555555555555554 PP

>> TIGR00954  3a01203: peroxysomal long chain fatty acyl transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.0     0.065       3.8     455     497 ..     276     317 ..     243     322 .. 0.81
   2 !   13.3   0.0   7.7e-05    0.0044     580     638 ..     383     442 ..     361     447 .. 0.81
   3 !   11.9   0.0    0.0002     0.012     455     524 ..     584     656 ..     565     695 .. 0.85
   4 !    8.8   0.0    0.0018       0.1     583     613 ..     798     828 ..     779     843 .. 0.92

  Alignments for each domain:
  == domain 1    score: 3.6 bits;  conditional E-value: 0.065
   TIGR00954 455 feniplvtPegdvlieeLsfevksGnhlLiiGPnGcGKsslfR 497
                 ++ni l   +g vl+ +  ++ + G+   +iG nG GK  l  
  MMETSP1137-20121227|4734_1 276 MQNIIL-AFAGRVLLRKADVRFERGHRYGLIGQNGTGKTTLLN 317
                 444433.348****************************99865 PP

  == domain 2    score: 13.3 bits;  conditional E-value: 7.7e-05
   TIGR00954 580 WkdvLsgGekqRiamARlfyHkPkfavLDEctsAvsvdvEdklyelake.vgitllsvsh 638
                 + + LsgG k R+++A  + H P+  +LDE t+ +  +  d l +++ + +g+t+  vsh
  MMETSP1137-20121227|4734_1 383 YVNSLSGGWKMRMSVAISMMHEPELLLLDEPTNHLDREAIDWLTNHLLSlKGVTIAVVSH 442
                 5688*****************************988887777766654314566656665 PP

  == domain 3    score: 11.9 bits;  conditional E-value: 0.0002
   TIGR00954 455 feniplvtPegd.vlieeLsfevksGnhlLiiGPnGcGKsslfRi.lgelWPvyg.glltkpeegklFyvPqr 524
                 + ++    Pe d  ++++++  +  G+  +i+G nG GKs + ++ +g+l P  g g   k +  +l yv q+
  MMETSP1137-20121227|4734_1 584 LKDVSFKYPETDrYILNKVEATLTLGSRAVIVGGNGSGKSTFLKLlIGDLEPEEGiGAAWKHHALRLSYVAQQ 656
                 55666667765515779999999*****************988862699***999999999999999999997 PP

  == domain 4    score: 8.8 bits;  conditional E-value: 0.0018
   TIGR00954 583 vLsgGekqRiamARlfyHkPkfavLDEctsA 613
                  +sgG++qR+ +   f+ kP+ + LDE t+ 
  MMETSP1137-20121227|4734_1 798 QMSGGQRQRLVICAAFWSKPHVIALDEPTNY 828
                 58***************************86 PP

>> TIGR01192  chvA: glucan exporter ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.0      0.35        21     354     381 ..     294     319 ..     257     325 .. 0.77
   2 !    9.4   0.0    0.0014     0.078     469     507 ..     384     422 ..     360     454 .. 0.83
   3 !   10.4   0.0   0.00065     0.037     335     391 ..     582     639 ..     567     661 .. 0.85
   4 !   12.8   0.0   0.00012    0.0069     468     520 ..     795     849 ..     780     857 .. 0.82

  Alignments for each domain:
  == domain 1    score: 1.4 bits;  conditional E-value: 0.35
   TIGR01192 354 vsfeakagqtvaivgptgagkttlinll 381
                 v f    g+   ++g  g+gkttl+n l
  MMETSP1137-20121227|4734_1 294 VRF--ERGHRYGLIGQNGTGKTTLLNRL 319
                 444..46888999************987 PP

  == domain 2    score: 9.4 bits;  conditional E-value: 0.0014
   TIGR01192 469 gnrlsggerqrlaiarailknapilvldeatsaldvete 507
                  n lsgg + r+++a +++++  +l+lde t  ld e+ 
  MMETSP1137-20121227|4734_1 384 VNSLSGGWKMRMSVAISMMHEPELLLLDEPTNHLDREAI 422
                 689********************************9875 PP

  == domain 3    score: 10.4 bits;  conditional E-value: 0.00065
   TIGR01192 335 vefrdisfefanssqgvrd.vsfeakagqtvaivgptgagkttlinllqrvydpksgq 391
                 + ++d+sf+++++ + + + v  +   g    ivg  g+gk+t++ ll    +p++g 
  MMETSP1137-20121227|4734_1 582 MTLKDVSFKYPETDRYILNkVEATLTLGSRAVIVGGNGSGKSTFLKLLIGDLEPEEGI 639
                 5789*********998764399999***********************9999999884 PP

  == domain 4    score: 12.8 bits;  conditional E-value: 0.00012
   TIGR01192 468 rgnrlsggerqrlaiarailknapilvldeatsaldvetea..rvkdaidalrkn 520
                 +  ++sgg+rqrl i  a      ++ lde t  ld ++ a    k a+ ++++n
  MMETSP1137-20121227|4734_1 795 KIRQMSGGQRQRLVICAAFWSKPHVIALDEPTNYLDNDSVAxkDFKGAVVTVSEN 849
                 5579*******************************98876511467777777766 PP

>> TIGR00956  3a01205: pleiotropic drug resistance family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.2   0.0   0.00038     0.022     774     814 ..     284     324 ..     234     330 .. 0.80
   2 ?    4.2   0.0     0.024       1.4     907     937 ..     392     421 ..     363     439 .. 0.80
   3 !   18.7   0.0   9.6e-07   5.5e-05      67     242 ..     589     831 ..     576     854 .. 0.81

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 0.00038
   TIGR00956 774 ekrvlLdevdGwvkPGkltALmGasGAGkttLlnvLaeRvt 814
                   rvlL + d  ++ G+   L+G+ G GkttLln La +  
  MMETSP1137-20121227|4734_1 284 AGRVLLRKADVRFERGHRYGLIGQNGTGKTTLLNRLAAKDI 324
                 568999999999999*********************98765 PP

  == domain 2    score: 4.2 bits;  conditional E-value: 0.024
   TIGR00956 907 RkrltigveLvAkPklllFlDePtsGLDsqt 937
                 + r+++++ ++ +P+ ll lDePt  LD  +
  MMETSP1137-20121227|4734_1 392 KMRMSVAISMMHEPE-LLLLDEPTNHLDREA 421
                 558888888888994.556899998888765 PP

  == domain 3    score: 18.7 bits;  conditional E-value: 9.6e-07
   TIGR00956  67 kekeskkfdilkdvdglikpgelvvvLGrPgsGcstlLksiasktegfk......kgkeskitYdgl.skeeikkhyrgdvv.Ys.....aetdvHlpsl.tvketLdfaarlktpqnRvkgvsreeyakk.........................................................ladvvlaiyGLshtkntkvGndlvRGvsGGerkRvsiaevlvakakiqcwDnatrGLDs 242
                  +  ++ + il++v++ +  g   v++G  gsG+st+Lk + +++e  +      k +  +++Y +  s + ++ h ++  + Y+        d  + +l +++ t +  a++ +p+  +  v r++  +k                                                          +   la +G++ t     G   +R +sGG+r+R+ i  ++ +k+++  +D+ t  LD 
  MMETSP1137-20121227|4734_1 589 FKYPETDRYILNKVEATLTLGSRAVIVGGNGSGKSTFLKLLIGDLEPEEgigaawKHHALRLSYVAQqSLHHLEDHVTSTPIqYIqarfrQGLDAEVAKLkSIQLTDEEKAAMEGPNAIYAIVGRTSKGNKpwyefqqrgkmksdtqslplseitmrfppyvlkliknydqkaqalesgmairpiteaEVLKHLADFGIDQTLA--FG--KIRQMSGGQRQRLVICAAFWSKPHVIALDEPTNYLDN 831
                 555667889**********************************99754311111133556788866416789999988765435411111457999**99557779999***********************************************************************999987443333467778777754..44..59*******************************9996 PP

>> TIGR01257  rim_protein: rim ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.0      0.14       8.1    1925    1986 ..     261     320 ..     245     325 .. 0.72
   2 !   21.1   0.0   1.1e-07   6.3e-06    2069    2141 ..     385     455 ..     369     461 .. 0.87
   3 ?    1.3   0.0       0.1       5.9    1940    1994 ..     584     638 ..     573     693 .. 0.62
   4 ?    4.6   0.0      0.01      0.58    1058    1096 ..     795     833 ..     773     848 .. 0.83

  Alignments for each domain:
  == domain 1    score: 0.8 bits;  conditional E-value: 0.14
   TIGR01257 1925 rqriisggnktdilrlneltkvysgtsspavdrlcvgvrpgecfgllgvngagktttfkmlt 1986
                  +q +   g+k   l ++++   ++g     + +  v    g  +gl+g ng+gktt ++ l+
  MMETSP1137-20121227|4734_1  261 KQMLAKSGDKDFALDMQNIILAFAGRV--LLRKADVRFERGHRYGLIGQNGTGKTTLLNRLA 320 
                  455555666666666666666666643..445566777889999***********9887765 PP

  == domain 2    score: 21.1 bits;  conditional E-value: 1.1e-07
   TIGR01257 2069 gtysggnkrklstaialigcpplvlldepttgmdpqarrmlwntivsiiregravvltshsmeecealctrla 2141
                   + sgg k ++s ai+++  p l+lldept  +d +a   l n ++s+     ++ + sh  +  + +ct ++
  MMETSP1137-20121227|4734_1  385 NSLSGGWKMRMSVAISMMHEPELLLLDEPTNHLDREAIDWLTNHLLSLKG--VTIAVVSHDYDFIDEVCTDIT 455 
                  5679******************************************9865..555566999999999999765 PP

  == domain 3    score: 1.3 bits;  conditional E-value: 0.1
   TIGR01257 1940 lneltkvysgtsspavdrlcvgvrpgecfgllgvngagktttfkmltgdttvtsg 1994
                  l++++  y+ t    ++++   +  g    ++g ng+gk+t +k+l gd     g
  MMETSP1137-20121227|4734_1  584 LKDVSFKYPETDRYILNKVEATLTLGSRAVIVGGNGSGKSTFLKLLIGDLEPEEG 638 
                  4555555555555555555555555666666666666666666666666554444 PP

  == domain 4    score: 4.6 bits;  conditional E-value: 0.01
   TIGR01257 1058 eaqdlsgglqrklsvaiafvgdakvvvldeptsgvdpys 1096
                  + +++sgg +++l ++ af    +v+ ldept  +d  s
  MMETSP1137-20121227|4734_1  795 KIRQMSGGQRQRLVICAAFWSKPHVIALDEPTNYLDNDS 833 
                  67899***999*********************9888755 PP

>> TIGR01194  cyc_pep_trnsptr: cyclic peptide transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.0      0.36        21     361     386 ..     293     318 ..     284     329 .. 0.84
   2 ?    2.8   0.0      0.12       7.1     468     533 ..     385     447 ..     368     460 .. 0.84
   3 !   21.1   0.0   3.6e-07   2.1e-05     337     396 ..     582     638 ..     577     640 .. 0.92
   4 ?    2.7   0.0      0.13       7.7     462     497 ..     791     826 ..     780     839 .. 0.85

  Alignments for each domain:
  == domain 1    score: 1.3 bits;  conditional E-value: 0.36
   TIGR01194 361 dlriasGelvyivGenGcGkstlikl 386
                 d+r ++G+   ++G+nG Gk+tl+  
  MMETSP1137-20121227|4734_1 293 DVRFERGHRYGLIGQNGTGKTTLLNR 318
                 777788888889**********9865 PP

  == domain 2    score: 2.8 bits;  conditional E-value: 0.12
   TIGR01194 468 tdlstGqrkrlalvnayleerpvllldewaadqdpafkrvfyeellpdlkrrGktilvishddryf 533
                  +ls G + r+++  + + e  +lllde +   d      + + ll     +G ti v+shd  + 
  MMETSP1137-20121227|4734_1 385 NSLSGGWKMRMSVAISMMHEPELLLLDEPTNHLDREAIDWLTNHLLS---LKGVTIAVVSHDYDFI 447
                 5799****************************999988888777764...57**********7765 PP

  == domain 3    score: 21.1 bits;  conditional E-value: 3.6e-07
   TIGR01194 337 lelkdvrysykdvessegfalGpidlriasGelvyivGenGcGkstliklllGlyipqeG 396
                 + lkdv ++y+++   + + l  ++ +++ G    ivG+nG Gkst++kll+G   p+eG
  MMETSP1137-20121227|4734_1 582 MTLKDVSFKYPET---DRYILNKVEATLTLGSRAVIVGGNGSGKSTFLKLLIGDLEPEEG 638
                 6799999999976...5799************************************9998 PP

  == domain 4    score: 2.7 bits;  conditional E-value: 0.13
   TIGR01194 462 lnystttdlstGqrkrlalvnayleerpvllldewa 497
                 l++    ++s Gqr+rl + +a+  +  v+ lde +
  MMETSP1137-20121227|4734_1 791 LAFGKIRQMSGGQRQRLVICAAFWSKPHVIALDEPT 826
                 567778899*********999999999999999965 PP

>> TIGR00957  MRP_assoc_pro: multi drug resistance-associated protein (MRP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0      0.85        49    1300    1328 ..     287     315 ..     275     322 .. 0.88
   2 !    6.9   0.0    0.0032      0.18     760     833 ..     386     455 ..     377     554 .. 0.72
   3 !    8.1   0.0    0.0014     0.081     636     708 ..     581     657 ..     568     682 .. 0.81
   4 !    6.6   0.0     0.004      0.23     750     794 ..     788     832 ..     772     847 .. 0.81

  Alignments for each domain:
  == domain 1    score: -1.2 bits;  conditional E-value: 0.85
   TIGR00957 1300 lvlrdlnvtieggekvgivgrtgagkssl 1328
                  ++lr+ +v+ e g + g++g+ g+gk++l
  MMETSP1137-20121227|4734_1  287 VLLRKADVRFERGHRYGLIGQNGTGKTTL 315 
                  5789999*******************987 PP

  == domain 2    score: 6.9 bits;  conditional E-value: 0.0032
   TIGR00957 760 nlsggqkqrvslaravysdadiyllddplsavdahvakhifekvigpkgllknktrilvthgisylpqvdviiv 833
                  lsgg k r+s+a ++  + ++ lld+p   +d      + ++++  kg+    t  +v+h   ++ +v   i 
  MMETSP1137-20121227|4734_1 386 SLSGGWKMRMSVAISMMHEPELLLLDEPTNHLDREAIDWLTNHLLSLKGV----TIAVVSHDYDFIDEVCTDIT 455
                 49****************************99999999999999886665....67788888888877655444 PP

  == domain 3    score: 8.1 bits;  conditional E-value: 0.0014
   TIGR00957 636 sitvknatftwardepptlngltlsipegalvavvgqvgcgkssllsallaemdkvegkva.lkg...svayvpqqa 708
                  +t+k+ +f + + +   ln ++ ++  g+   +vg  g gks++l  l+++++  eg  a  k     ++yv qq+
  MMETSP1137-20121227|4734_1 581 VMTLKDVSFKYPETDRYILNKVEATLTLGSRAVIVGGNGSGKSTFLKLLIGDLEPEEGIGAaWKHhalRLSYVAQQS 657
                 57899999999999999999999999999999999999999999999999999999985431232111356777765 PP

  == domain 4    score: 6.6 bits;  conditional E-value: 0.004
   TIGR00957 750 drteigekgvnlsggqkqrvslaravysdadiyllddplsavdah 794
                 d+t    k  ++sggq+qr+ ++ a +s+  +  ld+p   +d  
  MMETSP1137-20121227|4734_1 788 DQTLAFGKIRQMSGGQRQRLVICAAFWSKPHVIALDEPTNYLDND 832
                 666666677789**************************9988864 PP

>> TIGR00630  uvra: excinuclease ABC subunit A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.0      0.37        21     320     383 ..     127     188 ..      92     265 .. 0.74
   2 !   10.3   0.0    0.0005     0.029     827     896 ..     385     449 ..     347     466 .. 0.70
   3 ?    3.8   0.0     0.049       2.8     622     651 ..     598     627 ..     582     637 .. 0.87
   4 ?    2.0   0.0      0.17       9.8     466     858 ..     777     825 ..     722     836 .. 0.61

  Alignments for each domain:
  == domain 1    score: 0.8 bits;  conditional E-value: 0.37
   TIGR00630 320 qilkslaeklgfdldtplkdlseeakkavLyGsdeeveevkrekekekarlkkefeGvleeler 383
                 + l  l ++l+   +  ++d+ ++ak+ +L+G+++  e+ k++++  +++++++ +Gv + l  
  MMETSP1137-20121227|4734_1 127 TLLPLLEKNLDH-SSPVIRDIAAKAKERLLEGAGDLGEQAKHHQSL-AMHVSEQLKGVNAALPA 188
                 444444444433.345689**************9999877776655.67999999999877755 PP

  == domain 2    score: 10.3 bits;  conditional E-value: 0.0005
   TIGR00630 827 ttLsGGeaqrvkLakeLskrstgktlyilDePttGLhfdDikkLlevlqrlvdkGntvvviehnldviks 896
                  +LsGG   r+ +a  + +      l +lDePt  L  + i  L + l +l  kG t+ v+ h+ d i +
  MMETSP1137-20121227|4734_1 385 NSLSGGWKMRMSVAISMMH---EPELLLLDEPTNHLDREAIDWLTNHLLSL--KGVTIAVVSHDYDFIDE 449
                 5677777777777766654...45577777777777777777777765444..67777777777777754 PP

  == domain 3    score: 3.8 bits;  conditional E-value: 0.049
   TIGR00630 622 nlkdidvsiplglltvitGvsgsGkstLin 651
                  l++++ ++ lg   vi G  gsGkst+++
  MMETSP1137-20121227|4734_1 598 ILNKVEATLTLGSRAVIVGGNGSGKSTFLK 627
                 5889999********************875 PP

  == domain 4    score: 2.0 bits;  conditional E-value: 0.17
   TIGR00630 466 erlkfLvdvGLdYLsleraaetlsGGeaqrirlatqiGsgLvGvlYvlDePsiGLhqrDnerLietlkrlrdlGntlivvehDeetireaDyvvdiGPgaGehGGevvasgsleellkkkesltgqYlsgkkkievPkerrkaegkvltlkgakennlkdidvsiplglltvitGvsgsGkstLindiLvkaleerlnkaktekgkvkeieGlekldkvieidqspiGrtprsnPatYtgvfdeireLfaetpeakarGykagrfsfnvkgGrCeaCkGdGvikiemnflpdvyvpCevCkGkrynretLevkykgkniadvLdmtveeakeffeavpkisrklellvdvGLgYiklGqpattLsGGeaqrvkLakeLskrstgktlyilDeP 858
                 e lk L d G+d      +++ +sGG +qr+ + +   s+                                                                                                                                                                                                                                                                                                                                                          +  lDeP
  MMETSP1137-20121227|4734_1 777 EVLKHLADFGIDQTLAFGKIRQMSGGQRQRLVICAAFWSKPH--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------VIALDEP 825
                 346666666666655556666666666666665554444422........................................................................................................................................................................................................................................................................................................................................................3333444 PP

>> TIGR00929  VirB4_CagE: type IV secretion/conjugal transfer ATPase, VirB4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.4   0.0     0.002      0.11     442     459 ..     304     321 ..     297     325 .. 0.91
   2 !    8.0   0.1    0.0026      0.15     440     458 ..     612     630 ..     600     635 .. 0.88
   3 ?   -2.4   0.0       3.7   2.2e+02     629     654 ..     798     836 ..     793     838 .. 0.73

  Alignments for each domain:
  == domain 1    score: 8.4 bits;  conditional E-value: 0.002
   TIGR00929 442 IfGptgsGKTvllnflla 459
                 ++G++g+GKT+lln l+a
  MMETSP1137-20121227|4734_1 304 LIGQNGTGKTTLLNRLAA 321
                 69*************998 PP

  == domain 2    score: 8.0 bits;  conditional E-value: 0.0026
   TIGR00929 440 TlIfGptgsGKTvllnfll 458
                 ++I+G +gsGK+++l++l+
  MMETSP1137-20121227|4734_1 612 AVIVGGNGSGKSTFLKLLI 630
                 78**************998 PP

  == domain 3    score: -2.4 bits;  conditional E-value: 3.7
   TIGR00929 629 ealdg.............rrfliiiDEawkllgdpvfea 654
                 ++  g             ++ +i++DE   +l++++++ 
  MMETSP1137-20121227|4734_1 798 QMSGGqrqrlvicaafwsKPHVIALDEPTNYLDNDSVAX 836
                 555555556666666666999**************9876 PP

>> TIGR03819  heli_sec_ATPase: helicase/secretion neighborhood ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.0      0.13       7.3     184     200 ..     305     321 ..     292     325 .. 0.86
   2 !   11.7   0.0   0.00039     0.023     144     208 ..     574     639 ..     555     649 .. 0.77

  Alignments for each domain:
  == domain 1    score: 3.5 bits;  conditional E-value: 0.13
   TIGR03819 184 sGgtGsGkttLLsalLa 200
                  G  G+GkttLL+ l a
  MMETSP1137-20121227|4734_1 305 IGQNGTGKTTLLNRLAA 321
                 6999********98866 PP

  == domain 2    score: 11.7 bits;  conditional E-value: 0.00039
   TIGR03819 144 lRvlrrrkfsldelvaa.gaiapevaelleaivaarlallvsGgtGsGkttLLsalLalvaedeRi 208
                 +R++r+  ++l+++  +    ++ + + +ea ++     +++Gg GsGk t L  l++ ++++e i
  MMETSP1137-20121227|4734_1 574 IRTFRKPVMTLKDVSFKyPETDRYILNKVEATLTLGSRAVIVGGNGSGKSTFLKLLIGDLEPEEGI 639
                 6777777777777654303334444444555566667789*******************9999865 PP

>> TIGR00231  small_GTP: small GTP-binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.0   0.0     0.001     0.059       7      27 ..     303     323 ..     298     336 .. 0.89
   2 ?    4.2   0.1      0.13       7.4       7      25 ..     613     631 ..     609     640 .. 0.88

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 0.001
   TIGR00231   7 vivGhvdvGKstLlnsllknk 27 
                 +++G+ + GK+tLln+l+ ++
  MMETSP1137-20121227|4734_1 303 GLIGQNGTGKTTLLNRLAAKD 323
                 89***************9887 PP

  == domain 2    score: 4.2 bits;  conditional E-value: 0.13
   TIGR00231   7 vivGhvdvGKstLlnsllk 25 
                 vivG  ++GKst l+ l++
  MMETSP1137-20121227|4734_1 613 VIVGGNGSGKSTFLKLLIG 631
                 8*************99986 PP

>> TIGR03499  FlhF: flagellar biosynthesis protein FlhF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   0.0   0.00017      0.01     168     221 ..     270     322 ..     228     325 .. 0.75

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 0.00017
   TIGR03499 168 edaeeareklreaLekklsvkkeedeilekggviaLvGptGvGKTTTlAKLAar 221
                 +d    ++++  a ++++  +k++  +++ +  + L+G+ G GKTT l +LAa+
  MMETSP1137-20121227|4734_1 270 KDFALDMQNIILAFAGRVLLRKADVRFERGH-RYGLIGQNGTGKTTLLNRLAAK 322
                 4444555666666677775666666665555.9*******************97 PP

>> TIGR03925  T7SS_EccC_b: type VII secretion protein EccCb
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   0.0     0.019       1.1     284     384 ..     218     322 ..     209     336 .. 0.73
   2 ?    5.9   0.0     0.012      0.71      75      97 ..     608     630 ..     592     636 .. 0.75

  Alignments for each domain:
  == domain 1    score: 5.3 bits;  conditional E-value: 0.019
   TIGR03925 284 alprldglasaedlaalealveaiaaaaegekapkvrlLPerlelsalaek....eaeerervllGlees.dlapvaldfaeephllvlGdsesGktallraiaee 384
                 a+p + +  sae  + +e   +aiaa+a++      ++LPe+ + + la++     a + ++++l+ +++  l+ + + f++      +G++++Gkt+ll+ +a++
  MMETSP1137-20121227|4734_1 218 AVPMVTEWISAEIRGVVEVDDAAIAAVADSAVEYYKQMLPEESK-QMLAKSgdkdFALDMQNIILAFAGRvLLRKADVRFERGHRYGLIGQNGTGKTTLLNRLAAK 322
                 66666666655555555555566777777777777789998754.3444445555555678899999988567899999***999***************999865 PP

  == domain 2    score: 5.9 bits;  conditional E-value: 0.012
   TIGR03925  75 aagnvaivGapqsGkstalrtlv 97 
                  ++ ++ivG+  sGkst+l+ l+
  MMETSP1137-20121227|4734_1 608 LGSRAVIVGGNGSGKSTFLKLLI 630
                 45667788888888888887766 PP

>> TIGR02788  VirB11: P-type DNA transfer ATPase VirB11
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.0      0.56        32     149     165 ..     304     320 ..     298     342 .. 0.78
   2 !    9.6   0.0    0.0016     0.091     144     168 ..     609     633 ..     593     640 .. 0.81

  Alignments for each domain:
  == domain 1    score: 1.2 bits;  conditional E-value: 0.56
   TIGR02788 149 isGgtgsgKTTflkalv 165
                 ++G  g+gKTT+l+ l 
  MMETSP1137-20121227|4734_1 304 LIGQNGTGKTTLLNRLA 320
                 5799*********9874 PP

  == domain 2    score: 9.6 bits;  conditional E-value: 0.0016
   TIGR02788 144 kkniiisGgtgsgKTTflkalvkli 168
                 +   +i+Gg gsgK Tflk l+  +
  MMETSP1137-20121227|4734_1 609 GSRAVIVGGNGSGKSTFLKLLIGDL 633
                 56679**************999765 PP

>> TIGR00750  lao: LAO/AO transport system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.4   0.0    0.0076      0.44      22      57 ..     287     322 ..     282     326 .. 0.85
   2 ?    3.2   0.0      0.15       8.7      16      58 ..     590     633 ..     578     641 .. 0.77

  Alignments for each domain:
  == domain 1    score: 7.4 bits;  conditional E-value: 0.0076
   TIGR00750  22 ellkrilpktGrahvvGltGvPGaGkstlvekliee 57 
                  ll++   +  r h+ Gl G  G Gk tl+++l+ +
  MMETSP1137-20121227|4734_1 287 VLLRKADVRFERGHRYGLIGQNGTGKTTLLNRLAAK 322
                 5677777788899*******************9865 PP

  == domain 2    score: 3.2 bits;  conditional E-value: 0.15
   TIGR00750  16 eepe.akellkrilpktGrahvvGltGvPGaGkstlveklieel 58 
                 ++pe  + +l+++ ++     +  + G  G Gkst+++ li +l
  MMETSP1137-20121227|4734_1 590 KYPEtDRYILNKVEATLTLGSRAVIVGGNGSGKSTFLKLLIGDL 633
                 5666345688888888887888889999*********9998776 PP

>> TIGR00606  rad50: rad50
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0       1.2        70      33      50 ..     304     321 ..     303     363 .. 0.78
   2 ?    5.1   0.0     0.014      0.78    1213    1275 ..     394     449 ..     389     456 .. 0.79
   3 ?   -3.9   0.0       7.2   4.1e+02      31      46 ..     612     627 ..     609     629 .. 0.85
   4 ?    2.9   0.0     0.062       3.6    1213    1241 ..     806     834 ..     802     843 .. 0.89

  Alignments for each domain:
  == domain 1    score: -1.4 bits;  conditional E-value: 1.2
   TIGR00606  33 lvGPnGaGkttiiealky 50 
                 l+G nG+Gktt+++ l  
  MMETSP1137-20121227|4734_1 304 LIGQNGTGKTTLLNRLAA 321
                 689********9988765 PP

  == domain 2    score: 5.1 bits;  conditional E-value: 0.014
   TIGR00606 1213 rlalaevfclnCgiialdePttnldrekieslaialveiiksrsrqrdlqllvithdedlvel 1275
                  r+++a  +  +  ++ ldePt  ldre i+ l+  l  +       + + + v+ hd d+++ 
  MMETSP1137-20121227|4734_1  394 RMSVAISMMHEPELLLLDEPTNHLDREAIDWLTNHLLSL-------KGVTIAVVSHDYDFIDE 449 
                  7777777778888999**************999888765.......45667777777777765 PP

  == domain 3    score: -3.9 bits;  conditional E-value: 7.2
   TIGR00606  31 tllvGPnGaGkttiie 46 
                 +++vG nG+Gk t + 
  MMETSP1137-20121227|4734_1 612 AVIVGGNGSGKSTFLK 627
                 589*********9875 PP

  == domain 4    score: 2.9 bits;  conditional E-value: 0.062
   TIGR00606 1213 rlalaevfclnCgiialdePttnldreki 1241
                  rl +   f  +  +ialdePt  ld++ +
  MMETSP1137-20121227|4734_1  806 RLVICAAFWSKPHVIALDEPTNYLDNDSV 834 
                  7777888999999************9987 PP

>> TIGR02546  III_secr_ATP: type III secretion apparatus H+-transporting two-sector ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   0.0    0.0098      0.57     144     168 ..     297     321 ..     274     366 .. 0.92
   2 ?    3.1   0.0      0.12       6.9     142     168 ..     605     631 ..     599     637 .. 0.86

  Alignments for each domain:
  == domain 1    score: 6.6 bits;  conditional E-value: 0.0098
   TIGR02546 144 geGqRiGifaeaGvGkstLlsmiar 168
                  +G R G+ ++ G+Gk+tLl+ +a 
  MMETSP1137-20121227|4734_1 297 ERGHRYGLIGQNGTGKTTLLNRLAA 321
                 579******************9986 PP

  == domain 2    score: 3.1 bits;  conditional E-value: 0.12
   TIGR02546 142 tvgeGqRiGifaeaGvGkstLlsmiar 168
                 t++ G R  i ++ G+Gkst l+ ++ 
  MMETSP1137-20121227|4734_1 605 TLTLGSRAVIVGGNGSGKSTFLKLLIG 631
                 677789****************99875 PP

>> TIGR00176  mobB: molybdopterin-guanine dinucleotide biosynthesis protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   0.0     0.023       1.3       4      21 ..     304     321 ..     302     348 .. 0.81
   2 ?    3.5   0.0      0.25        14       3      37 ..     613     647 ..     612     662 .. 0.81

  Alignments for each domain:
  == domain 1    score: 6.8 bits;  conditional E-value: 0.023
   TIGR00176   4 ivgykdsGKTtlieklvk 21 
                 ++g  ++GKTtl+++l+ 
  MMETSP1137-20121227|4734_1 304 LIGQNGTGKTTLLNRLAA 321
                 6899***********986 PP

  == domain 2    score: 3.5 bits;  conditional E-value: 0.25
   TIGR00176   3 qivgykdsGKTtlieklvkelkargyrVatiKHda 37 
                  ivg  +sGK t ++ l+  l+ +    a+ KH+a
  MMETSP1137-20121227|4734_1 613 VIVGGNGSGKSTFLKLLIGDLEPEEGIGAAWKHHA 647
                 599***************99987655667778876 PP

>> TIGR00611  recf: DNA replication and repair protein RecF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   0.0     0.025       1.4      17      41 ..     292     317 ..     288     323 .. 0.79
   2 ?    3.3   0.1      0.14       7.8      22      41 ..     609     627 ..     598     631 .. 0.71

  Alignments for each domain:
  == domain 1    score: 5.7 bits;  conditional E-value: 0.025
   TIGR00611  17 vdlelspgvn.vlvGeNgqGKtnlle 41 
                 +d+ ++ g    l+G+Ng GKt ll+
  MMETSP1137-20121227|4734_1 292 ADVRFERGHRyGLIGQNGTGKTTLLN 317
                 6777777766469**********996 PP

  == domain 2    score: 3.3 bits;  conditional E-value: 0.14
   TIGR00611  22 spgvnvlvGeNgqGKtnlle 41 
                    + v+vG Ng+GK  +l+
  MMETSP1137-20121227|4734_1 609 G-SRAVIVGGNGSGKSTFLK 627
                 3.3469*********88775 PP

>> TIGR00152  TIGR00152: dephospho-CoA kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   0.0     0.037       2.1       3      22 ..     303     322 ..     302     328 .. 0.90
   2 ?    4.1   0.1      0.14       8.1       4      19 ..     614     629 ..     612     634 .. 0.89

  Alignments for each domain:
  == domain 1    score: 6.0 bits;  conditional E-value: 0.037
   TIGR00152   3 gltGgigsGKstvakilkdk 22 
                 gl+G+ g+GK+t++++l+ k
  MMETSP1137-20121227|4734_1 303 GLIGQNGTGKTTLLNRLAAK 322
                 89**************9876 PP

  == domain 2    score: 4.1 bits;  conditional E-value: 0.14
   TIGR00152   4 ltGgigsGKstvakil 19 
                 ++Gg gsGKst +k+l
  MMETSP1137-20121227|4734_1 614 IVGGNGSGKSTFLKLL 629
                 79**********9998 PP

>> TIGR01526  nadR_NMN_Atrans: nicotinamide-nucleotide adenylyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   0.0    0.0036      0.21     165     222 ..     302     359 ..     291     375 .. 0.77
   2 ?   -0.6   0.0       2.3   1.4e+02     164     182 ..     611     629 ..     597     636 .. 0.82

  Alignments for each domain:
  == domain 1    score: 8.6 bits;  conditional E-value: 0.0036
   TIGR01526 165 vailGgestGkstLvrklaeklnttsaeeyareyeeaklggdealkysdyakivlGqa 222
                   ++G + tGk+tL ++la+k    + +e    y  ++   d+ + +  + k+   + 
  MMETSP1137-20121227|4734_1 302 YGLIGQNGTGKTTLLNRLAAKDINGFPQELRTWYIRHEVLCDDGIDVRTFLKMKAPEG 359
                 5689***************987777888887777777777788888877777765555 PP

  == domain 2    score: -0.6 bits;  conditional E-value: 2.3
   TIGR01526 164 tvailGgestGkstLvrkl 182
                 +  i+Gg+ +Gkst  + l
  MMETSP1137-20121227|4734_1 611 RAVIVGGNGSGKSTFLKLL 629
                 45699*********98765 PP

>> TIGR00436  era: GTP-binding protein Era
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   0.0     0.016      0.93       4      25 ..     303     324 ..     300     330 .. 0.90
   2 ?    1.5   0.1      0.57        33       3      23 ..     612     632 ..     610     634 .. 0.88

  Alignments for each domain:
  == domain 1    score: 6.6 bits;  conditional E-value: 0.016
   TIGR00436   4 ailGrpnvGKSTLlNkllgqki 25 
                 +++G+  +GK TLlN+l  ++i
  MMETSP1137-20121227|4734_1 303 GLIGQNGTGKTTLLNRLAAKDI 324
                 789**************99887 PP

  == domain 2    score: 1.5 bits;  conditional E-value: 0.57
   TIGR00436   3 vailGrpnvGKSTLlNkllgq 23 
                 + i+G    GKST+l  l+g+
  MMETSP1137-20121227|4734_1 612 AVIVGGNGSGKSTFLKLLIGD 632
                 569************999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (879 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       249  (0.0607021); expected 82.0 (0.02)
Passed bias filter:                      221  (0.0538762); expected 82.0 (0.02)
Passed Vit filter:                       103  (0.0251097); expected 4.1 (0.001)
Passed Fwd filter:                        71  (0.0173086); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              71  [number of targets reported over threshold]
# CPU time: 1.81u 0.16s 00:00:01.97 Elapsed: 00:00:02.45
# Mc/sec: 473.54
//
Query:       MMETSP1137-20121227|4735_1  [L=229]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.5e-19   67.2   0.0    4.1e-19   67.0   0.0    1.1  1  TIGR04038 tatD_link_rSAM: radical SAM protein, TatD family-associated
    8.6e-18   62.5   0.0    9.9e-18   62.2   0.0    1.1  1  TIGR04100 rSAM_pair_X: radical SAM enzyme, TIGR04100 family
      5e-05   20.2   0.0    6.1e-05   19.9   0.0    1.1  1  TIGR02666 moaA: molybdenum cofactor biosynthesis protein A
    0.00029   18.2   0.0    0.00038   17.8   0.0    1.1  1  TIGR04055 rSAM_NirJ2: putative heme d1 biosynthesis radical SAM protein NirJ2
    0.00045   17.1   0.0    0.00057   16.8   0.0    1.1  1  TIGR02668 moaA_archaeal: probable molybdenum cofactor biosynthesis protein A
     0.0015   15.2   0.0     0.0019   14.8   0.0    1.1  1  TIGR01290 nifB: nitrogenase cofactor biosynthesis protein NifB


Domain annotation for each model (and alignments):
>> TIGR04038  tatD_link_rSAM: radical SAM protein, TatD family-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.0   0.0     6e-22   4.1e-19       2     145 ..       3     155 ..       2     185 .. 0.87

  Alignments for each domain:
  == domain 1    score: 67.0 bits;  conditional E-value: 6e-22
   TIGR04038   2 iaYeirnslYlnitnrCtlaCqfCikekekevkgye..lklekepsveeviaai...kdlkkyeEvvFcGyGepllrlevvkevakaikek.ga.kvRvntdGlanlvhkrnilpelagl.vdalsisLnaqdeetyqkicrpk.lkedayea 145
                 i+Y++r++lY+ +t+r + +     +   +++ + +   +l+ eps++e iaai     + +y  v+F+G Gepllrl  + + a++++ + +  ++Rv t+Gl +      ++++l+++ v ++s++L ++d++++q+++ p+ +++  ++ 
  MMETSP1137-20121227|4735_1   3 ITYTLRSALYVALTDRSNAKTLIASRGPGFQMPHASgfASLASEPSSAEAIAAIqgaLAAASYTSVCFAGLGEPLLRLPELEDTARWLRLHnPDlPIRVATNGLVSSAMAASVAKRLREVgVCSVSVALASSDASQWQRLACPEyFADREWQG 155
                 89************************997777543322689*************54335689**************************9886446************************99******************97665145556665 PP

>> TIGR04100  rSAM_pair_X: radical SAM enzyme, TIGR04100 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.2   0.0   1.5e-20   9.9e-18       2     143 ..       3     148 ..       2     187 .. 0.92

  Alignments for each domain:
  == domain 1    score: 62.2 bits;  conditional E-value: 1.5e-20
   TIGR04100   2 ilyelknklyvnitnkCpcaCtfCirkekdgvgdsdsl.WlehePsleeilaald.kfdlskyeelvfCGyGePlerldallevakyikek.sklkirintnGladlihgrktaeelkel.vdavsislnapdaesylevtrpkfg 143
                 i+y+l+  lyv +t++ + +     r     + +++ +  l  ePs  e +aa++ +    +y  + f G GePl rl +l ++a++++ +  +l+ir+ tnGl+      ++a++l+e+ v +vs++l  +da ++++++ p++ 
  MMETSP1137-20121227|4735_1   3 ITYTLRSALYVALTDRSNAKTLIASRGPGFQMPHASGFaSLASEPSSAEAIAAIQgALAAASYTSVCFAGLGEPLLRLPELEDTARWLRLHnPDLPIRVATNGLVSSAMAASVAKRLREVgVCSVSVALASSDASQWQRLACPEYF 148
                 89************************9988777666542799************94568899***************************76589***********************9986899*****************99985 PP

>> TIGR02666  moaA: molybdenum cofactor biosynthesis protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.0     9e-08   6.1e-05      44     134 ..      49     143 ..      11     158 .. 0.83

  Alignments for each domain:
  == domain 1    score: 19.9 bits;  conditional E-value: 9e-08
   TIGR02666  44 tleeierlvklavklgvekvRlTG.GEPllr.kdlvelvarlaklegieledialttNgll....LerkakaLkeaGlkrvnvSLDsLdaekfkkit 134
                 + e i+ +  ++++ + ++v + G GEPllr ++l++  + l+ ++  +   i+++tNgl+     ++ ak+L+e G+  v v L s da++ ++++
  MMETSP1137-20121227|4735_1  49 SAEAIAAIQGALAAASYTSVCFAGlGEPLLRlPELEDTARWLRLHNP-D-LPIRVATNGLVssamAASVAKRLREVGVCSVSVALASSDASQWQRLA 143
                 567788888899999999999**99******6789999888888777.3.69*******9722213455789********************99987 PP

>> TIGR04055  rSAM_NirJ2: putative heme d1 biosynthesis radical SAM protein NirJ2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.0   5.6e-07   0.00038      26     115 ..      44     141 ..      35     157 .. 0.76

  Alignments for each domain:
  == domain 1    score: 17.8 bits;  conditional E-value: 5.6e-07
   TIGR04055  26 eeelsteeakklid.eiakagfkilifsG.GePllr.ediyeliaya..tkkglrvvlgtnGtl...iteevakklkeaGvqrvgisldsldaekhdk 115
                 ++e s++ea + i+  +a+a+   + f+G GePllr +++ + +++   ++  l + ++tnG +   ++  vak+l+e+Gv +v+++l s+da++ ++
  MMETSP1137-20121227|4735_1  44 ASEPSSAEAIAAIQgALAAASYTSVCFAGlGEPLLRlPELEDTARWLrlHNPDLPIRVATNGLVssaMAASVAKRLREVGVCSVSVALASSDASQWQR 141
                 567777788777762578889999999999******4455555554311466788899***965222678899*******************988765 PP

>> TIGR02668  moaA_archaeal: probable molybdenum cofactor biosynthesis protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0   8.3e-07   0.00057      28     130 ..      36     146 ..      12     162 .. 0.80

  Alignments for each domain:
  == domain 1    score: 16.8 bits;  conditional E-value: 8.3e-07
   TIGR02668  28 HkeGeeesaeeelsaeeiervvrvakelGvrkvkltG.GEPllR.kDleeiierikkee.ikevslttnGi....lLeklakkLkeaGLdRvnvSldtldeekykkit.sr 130
                 H  G  + a+e  sae i  +  + +    ++v ++G GEPllR  +le+  + ++ ++ +  + ++tnG+    + +++ak+L+e+G+  v v+l + d+ +++++   +
  MMETSP1137-20121227|4735_1  36 HASGFASLASEPSSAEAIAAIQGALAAASYTSVCFAGlGEPLLRlPELEDTARWLRLHNpDLPIRVATNGLvssaMAASVAKRLREVGVCSVSVALASSDASQWQRLAcPE 146
                 66666666677778999999999999999999999999******5478888776664431457999****8222244567899**********************998443 PP

>> TIGR01290  nifB: nitrogenase cofactor biosynthesis protein NifB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   2.7e-06    0.0019      60     145 ..      45     135 ..      36     158 .. 0.77

  Alignments for each domain:
  == domain 1    score: 14.8 bits;  conditional E-value: 2.7e-06
   TIGR01290  60 ltPeqalak.vkavaaeikqlsvvGiaGPGdplanakktfatlelvkrevPdvklclstnGl....alpevvdrlvdlnvdhvtitinaid 145
                   P  a+a  +++ a +    + v  aG G+pl    +  +t   ++ + Pd+ + ++tnGl    +   v  rl +++v  v++++   d
  MMETSP1137-20121227|4735_1  45 SEPSSAEAIaAIQGALAAASYTSVCFAGLGEPLLRLPELEDTARWLRLHNPDLPIRVATNGLvssaMAASVAKRLREVGVCSVSVALASSD 135
                 55655555313444555556667899************************************33322345668999999999999987766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (229 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       102  (0.0248659); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.24u 0.18s 00:00:00.42 Elapsed: 00:00:00.56
# Mc/sec: 539.74
//
Query:       MMETSP1137-20121227|4736_1  [L=1070]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.2e-23   80.8   5.9    6.7e-23   79.2   4.1    1.7  1  TIGR03921 T7SS_mycosin: type VII secretion-associated serine protease mycosin
    2.6e-05   21.0   5.1    2.6e-05   21.0   3.5    1.6  2  TIGR03895 protease_PatA: cyanobactin maturation protease, PatA/PatG family


Domain annotation for each model (and alignments):
>> TIGR03921  T7SS_mycosin: type VII secretion-associated serine protease mycosin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.2   4.1   3.3e-26   6.7e-23      12     254 ..     348     597 ..     344     605 .. 0.79

  Alignments for each domain:
  == domain 1    score: 79.2 bits;  conditional E-value: 3.3e-26
   TIGR03921  12 GagvtVAViDtGvd.rhPrLpgev.........aGgDlve..sgdged..dcdghGTlvAglIAarpaegsGfvGvAPdakilpirqtskafe...dkeeksavgdletlAkairrAadsgAkVINiSevaclsaksaadeselgaAvkyalekdvvvvAaagnegqdgsktvvyPAay.....pgVlaVgsidrsgepssfslagpwvdvaApgenlvslspggdglasavgespleGtSfAaplVsgvAaLvrskfpeltaaq 254
                 G+gv V ViD+G++ +h++  +++         +  D ve   gd  +  d  ghGT vAg +A+r+      +G+A  a++ ++++++ +     d  e+  +  +++  + ir+   +g k   + +    s++++a+ s+l+    +   ++v v +aagn+  d+ +  ++PA++       V++V++   + +++ +s +g  vd+ Apg+ ++s++  +   +++ g + ++GtS+AaplV+gv aLv +++p+ ++  
  MMETSP1137-20121227|4736_1 348 GEGVHVFVIDSGINaNHRDFLDARgnsrigtsyNAFDRVEcaPGDMGAcmDTGGHGTHVAGTVAGRR------YGLASCATVHAVKISEGHAGasiDFLEAGIDWLIRYHNANIRWKWTNGKKLRSV-V--VASLNAEAPVSHLNSMFVKLTWNGVAVSVAAGNNDVDACQ--SSPASAggksgSAVVTVAASAIDDSKAPYSNWGSCVDLFAPGTGIASAAAPD---VTD-GYTVMSGTSMAAPLVAGVMALVSEAYPNYSPLV 597
                 9*************99*997543322231111234566667744443337888*************8......***************9888744333344445557777889**********9988.3..3489999999***********************9888866..8888753111457**********************************98555...222.234578**********************99865 PP

>> TIGR03895  protease_PatA: cyanobactin maturation protease, PatA/PatG family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.4      0.16   3.4e+02     224     286 ..      81     128 ..      60     164 .. 0.39
   2 !   21.0   3.5   1.2e-08   2.6e-05      83     176 ..     487     586 ..     469     592 .. 0.77

  Alignments for each domain:
  == domain 1    score: -2.5 bits;  conditional E-value: 0.16
   TIGR03895 224 alelltgekeseeavlveekeveeasgaevesaaeseteaipaaeaeeaasvsiesaaaaeka 286
                  le lt ++ ++ ++  + +e+ e++ a+  ++a+++t                e+ a a++a
  MMETSP1137-20121227|4736_1  81 KLEALTPQQAAHALEHANAHEIAEEERAAAAAEAATATW---------------ETKAWAKDA 128
                 333333222222222222222222222222111111111...............111122222 PP

  == domain 2    score: 21.0 bits;  conditional E-value: 1.2e-08
   TIGR03895  83 klcqenniLi.vaaaGndgceClhvPaal.....psvlavGAmdadGrplefsnwGeaykeqGilApGenilgakpg...getvrksGtslAtavvtgvaalL 176
                  + + n + + vaa+ nd  +C   Pa+      ++v++v A   d     +snwG       ++ApG +i +a      ++ +  sGts+A+++v+gv al+
  MMETSP1137-20121227|4736_1 487 VKLTWNGVAVsVAAGNNDVDACQSSPASAggksgSAVVTVAASAIDDSKAPYSNWGSCVD---LFAPGTGIASAAAPdvtDGYTVMSGTSMAAPLVAGVMALV 586
                 444556666615555566778******9733333569*******************9865...8*******9886432448999***************9974 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1070 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       116  (0.0282789); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.65u 0.17s 00:00:00.82 Elapsed: 00:00:01.59
# Mc/sec: 888.23
//
Query:       MMETSP1137-20121227|4737_1  [L=166]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (166 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       115  (0.0280351); expected 82.0 (0.02)
Passed bias filter:                       98  (0.0238908); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.17s 00:00:00.34 Elapsed: 00:00:00.47
# Mc/sec: 466.17
//
Query:       MMETSP1137-20121227|4738_1  [L=373]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      5e-10   37.2   0.1    8.4e-10   36.4   0.1    1.3  1  TIGR01454 AHBA_synth_RP: AHBA synthesis associated protein
    1.1e-08   33.0   0.0    1.5e-08   32.6   0.0    1.2  1  TIGR02253 CTE7: HAD hydrolase, TIGR02253 family
    1.3e-08   32.5   0.0    3.9e-08   30.9   0.0    1.6  1  TIGR01452 PGP_euk: phosphoglycolate/pyridoxal phosphate phosphatase family
    5.7e-08   30.7   0.0    1.3e-05   23.0   0.0    2.2  2  TIGR01460 HAD-SF-IIA: HAD hydrolase, family IIA
    6.2e-08   30.3   0.0    1.1e-07   29.5   0.0    1.3  1  TIGR01449 PGP_bact: phosphoglycolate phosphatase, bacterial
    4.1e-06   25.1   0.0      7e-06   24.4   0.0    1.3  1  TIGR01549 HAD-SF-IA-v1: HAD hydrolase, family IA, variant 1
    7.1e-06   24.0   0.0    1.3e-05   23.1   0.0    1.4  1  TIGR01662 HAD-SF-IIIA: HAD hydrolase, family IIIA
    1.3e-05   23.1   0.0    2.3e-05   22.3   0.0    1.4  1  TIGR03351 PhnX-like: phosphonatase-like hydrolase
    4.2e-05   21.0   0.0    6.8e-05   20.3   0.0    1.3  1  TIGR01668 YqeG_hyp_ppase: HAD phosphatase, family IIIA
    5.5e-05   21.0   0.0     0.0026   15.5   0.0    2.3  2  TIGR01656 Histidinol-ppas: histidinol-phosphate phosphatase domain
    0.00046   17.5   0.0     0.0011   16.3   0.0    1.6  2  TIGR01459 HAD-SF-IIA-hyp4: HAD hydrolase, TIGR01459 family
    0.00079   16.8   0.0     0.0011   16.3   0.0    1.2  1  TIGR02254 YjjG/YfnB: HAD hydrolase, TIGR02254 family
     0.0012   16.6   0.0     0.0031   15.3   0.0    1.8  1  TIGR01488 HAD-SF-IB: HAD phosphoserine phosphatase-like hydrolase, family IB
     0.0029   13.5   0.0       0.01   11.7   0.0    1.7  2  TIGR00870 trp: transient-receptor-potential calcium channel protein
     0.0042   14.2   0.0     0.0063   13.6   0.0    1.2  1  TIGR01422 phosphonatase: phosphonoacetaldehyde hydrolase
  ------ inclusion threshold ------
      0.044   11.4   0.0      0.063   10.9   0.0    1.2  1  TIGR02252 DREG-2: HAD hydrolase, REG-2-like, family IA


Domain annotation for each model (and alignments):
>> TIGR01454  AHBA_synth_RP: AHBA synthesis associated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.4   0.1   3.3e-12   8.4e-10      74     194 ..      57     184 ..      47     192 .. 0.81

  Alignments for each domain:
  == domain 1    score: 36.4 bits;  conditional E-value: 3.3e-12
   TIGR01454  74 vevfegvpellaelradglgtaiatgksgprarsllealgl...lelldevigsdevarpkpapdivrealdlldvaa.eaavmvgdal.idlasaraagvaa..vaalwgetdeaellaarpdvvlr 194
                 +e+ +g++ +l+ lr +g+ ta++t  s    r l  +l +   l+ +d  i  d+ + pkp+p  + +  ++ +++   +++mvgd++  d+  +r  gv++  va     +de+ + +++ d+ + 
  MMETSP1137-20121227|4738_1  57 MELEKGAAPMLLWLRRHGIPTALVTRNSAVTVRELHRKLKVesgLPAFDPAISRDDDVPPKPHPGALERIARQWNMPLgSHILMVGDSPsNDVVFGRNGGVSTalVAGSGRSADEGGVETNGADLCVS 184
                 6677899999************************988876544489***********************99**9999626788****97369*******99762133334445666777777777665 PP

>> TIGR02253  CTE7: HAD hydrolase, TIGR02253 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.6   0.0   5.7e-11   1.5e-08      79     220 ..      42     189 ..      16     190 .. 0.78

  Alignments for each domain:
  == domain 1    score: 32.6 bits;  conditional E-value: 5.7e-11
   TIGR02253  79 aeaviaylk.lklaylkvypdvvkvLleLresGyrlgliTdgltekqwe...klerlgvrdfFdavivseelgveKPhpkiFkaalkrlgv.kpeeavmvGDrlekDikGaknlglktvwinrgkskkee.ddvvekpdfeisslrel 220
                 a+++i + +    a+++   ++  +Ll Lr+ G+  +l+T   ++  +e   kl+     + Fd  i +++    KPhp   +  +++ ++  +   +mvGD++ +D+  ++n g+ t ++  ++ +++e   +++ +d  +s+l +l
  MMETSP1137-20121227|4738_1  42 ANEIIEKMEaDAAATMELEKGAAPMLLWLRRHGIPTALVTRNSAVTVRElhrKLKVESGLPAFDPAISRDDDVPPKPHPGALERIARQWNMpLGSHILMVGDSPSNDVVFGRNGGVSTALVAGSGRSADEgGVETNGADLCVSNLLQL 189
                 344444444356788999999*******************9887776662225555555679****************************94588999********************999888888877445566678888877665 PP

>> TIGR01452  PGP_euk: phosphoglycolate/pyridoxal phosphate phosphatase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.9   0.0   1.5e-10   3.9e-08     191     247 ..     106     163 ..      99     183 .. 0.85

  Alignments for each domain:
  == domain 1    score: 30.9 bits;  conditional E-value: 1.5e-10
   TIGR01452 191 tasgreplvvGkPsdfmleyikeklsid.PartlmvGdrletdilfGkdgGlktvlvl 247
                  a  r+  v  kP + +le i +++++   +++lmvGd    d++fG++gG++t+lv 
  MMETSP1137-20121227|4738_1 106 PAISRDDDVPPKPHPGALERIARQWNMPlGSHILMVGDSPSNDVVFGRNGGVSTALVA 163
                 56778888999***************963699************************95 PP

>> TIGR01460  HAD-SF-IIA: HAD hydrolase, family IIA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   0.0     0.012       3.1      18      53 ..      62      97 ..      58     108 .. 0.91
   2 !   23.0   0.0   4.9e-08   1.3e-05     197     243 ..     117     162 ..     107     165 .. 0.90

  Alignments for each domain:
  == domain 1    score: 5.3 bits;  conditional E-value: 0.012
   TIGR01460 18 galealnrlrakgkpvvfvTNnsgrseedlaeklss 53
                ga+ +l  lr+ g+p ++vT ns  + ++l+ kl+ 
  MMETSP1137-20121227|4738_1 62 GAAPMLLWLRRHGIPTALVTRNSAVTVRELHRKLKV 97
                89999999************************9987 PP

  == domain 2    score: 23.0 bits;  conditional E-value: 4.9e-08
   TIGR01460 197 KPspalykaaeellkarakrrkvlmvGDnlrtDvlgAkeaGldslLv 243
                 KP+p +++ ++++ +    ++ +lmvGD++  Dv ++++ G+ ++Lv
  MMETSP1137-20121227|4738_1 117 KPHPGALERIARQWNMPLGSH-ILMVGDSPSNDVVFGRNGGVSTALV 162
                 888888888888888888888.************************9 PP

>> TIGR01449  PGP_bact: phosphoglycolate phosphatase, bacterial
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.5   0.0   4.1e-10   1.1e-07      65     213 .]      38     193 ..      19     193 .. 0.81

  Alignments for each domain:
  == domain 1    score: 29.5 bits;  conditional E-value: 4.1e-10
   TIGR01449  65 vaelrklFlrhYeevaeeltsvfpgveaaleaLrakGlrlglvtnkPealarplLellglak...ylevligGdslaqrkPdPePLllaaerlgvep.aqmvyvGDs.evDiaaArAAGlpsvllt.yGYr.ygeaveelpadvlldsleellalL 213
                 +a   ++  ++ e++a+    +  g++ +l  Lr++G++ +lvt      +r+l   l + +    ++  i+ d+    kP+P  L  +a + ++    ++++vGDs  +D+   r  G+ ++l+   G    +++ve ++ad  +++l +l++lL
  MMETSP1137-20121227|4738_1  38 QAATANEIIEKMEADAAATMELEKGAAPMLLWLRRHGIPTALVTRNSAVTVRELHRKLKVESglpAFDPAISRDDDVPPKPHPGALERIARQWNMPLgSHILMVGDSpSNDVVFGRNGGVSTALVAgSGRSaDEGGVETNGADLCVSNLLQLPPLL 193
                 35556677788899999999999******************************98888776522267888999988889**************9976267789***9568**********999876245441456899999**9999999999987 PP

>> TIGR01549  HAD-SF-IA-v1: HAD hydrolase, family IA, variant 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.4   0.0   2.7e-08     7e-06      81     149 .]      85     156 ..      74     156 .. 0.86

  Alignments for each domain:
  == domain 1    score: 24.4 bits;  conditional E-value: 2.7e-08
   TIGR01549  81 iiSngslraqklllrkledyfelilvsdepgsKpepeiflaaleslgl..epevlhvGDn.lsDieaaknag 149
                  ++ + l+++ +++  l  ++  i+ +d+++ Kp+p +++++++++++  ++++l+vGD+  +D+  ++n g
  MMETSP1137-20121227|4738_1  85 AVTVRELHRKLKVESGLPAFDPAISRDDDVPPKPHPGALERIARQWNMplGSHILMVGDSpSNDVVFGRNGG 156
                 5677777888888888999999999********************9973368**************999976 PP

>> TIGR01662  HAD-SF-IIIA: HAD hydrolase, family IIIA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.1   0.0   5.2e-08   1.3e-05      21     138 ..      54     162 ..      43     164 .. 0.80

  Alignments for each domain:
  == domain 1    score: 23.1 bits;  conditional E-value: 5.2e-08
   TIGR01662  21 edeaelypevidalaelkkeGykvvivtNqsgigrgkesveevsekveslleelgvpidvliacp.hs..kceyrKpktgmleealkrlneidakesvvvGDavltDleaakrvGlatvlv 138
                  +  el +++ + l  l+++G+  ++vt +s               v++l ++l+v+    ++ p  s  ++   Kp +g+le++ ++ n    + +++vGD   +D+ ++++ G+ t+lv
  MMETSP1137-20121227|4738_1  54 AATMELEKGAAPMLLWLRRHGIPTALVTRNS------------AVTVRELHRKLKVESGLPAFDPaISrdDDVPPKPHPGALERIARQWNMPLGSHILMVGDSPSNDVVFGRNGGVSTALV 162
                 5566777788888889999999999999999............44567777777777777777776445577889**************96666899******************998877 PP

>> TIGR03351  PhnX-like: phosphonatase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.3   0.0   9.1e-08   2.3e-05      65     219 ..      38     193 ..      20     194 .. 0.81

  Alignments for each domain:
  == domain 1    score: 22.3 bits;  conditional E-value: 9.1e-08
   TIGR03351  65 kvqaifaeFeerlaelyddaevvalpGveeairdLrskGikvaLttGfdrevaeklleklgWsvged.vDavvtssdvaagRPaPdliyralertgvqdvrsvlvaGDta.nDleaginagatlvvGvltGas.daeeLsrapathvldsvadlpeLl 219
                 +++++++  e+   e+ ++a+++  +G++ ++  Lr +Gi +aL t  +  ++ +l +kl  + g    D +++ +d +  +P P  + r   + +++  +++l++GD++ nD+  g+n g+ +++   +G s d+  ++ ++a   ++++ +lp Ll
  MMETSP1137-20121227|4738_1  38 QAATANEIIEK--MEADAAATMELEKGAAPMLLWLRRHGIPTALVTRNSAVTVRELHRKLKVESGLPaFDPAISRDDDVPPKPHPGALERIARQWNMPLGSHILMVGDSPsNDVVFGRNGGVSTALVAGSGRSaDEGGVETNGADLCVSNLLQLPPLL 193
                 44444444443..3455566777789***********************************98875449*******************9999999*************9747***********99988899872455566777777778888888776 PP

>> TIGR01668  YqeG_hyp_ppase: HAD phosphatase, family IIIA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   0.0   2.7e-07   6.8e-05      91     137 ..     117     164 ..      70     173 .. 0.92

  Alignments for each domain:
  == domain 1    score: 20.3 bits;  conditional E-value: 2.7e-07
   TIGR01668  91 Kkpgkafrralkemglt.seqvvvvGDrlfTDvllgnrnGsltilvep 137
                 K+ ++a++r+ ++ +++  + +++vGD++  Dv+ g+  G+ t lv+ 
  MMETSP1137-20121227|4738_1 117 KPHPGALERIARQWNMPlGSHILMVGDSPSNDVVFGRNGGVSTALVAG 164
                 89999************99************************99975 PP

>> TIGR01656  Histidinol-ppas: histidinol-phosphate phosphatase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.0     0.063        16      19      57 ..      49      87 ..       1     100 [. 0.80
   2 !   15.5   0.0     1e-05    0.0026      99     144 ..     113     160 ..     102     165 .. 0.84

  Alignments for each domain:
  == domain 1    score: 3.2 bits;  conditional E-value: 0.063
   TIGR01656 19 lavkslddlqlepklvdallklkaaaytlvvvtnQqGvg 57
                +  ++++ ++le+++++ ll l++ ++  + vt  + v 
  MMETSP1137-20121227|4738_1 49 MEADAAATMELEKGAAPMLLWLRRHGIPTALVTRNSAVT 87
                67889999*************************998887 PP

  == domain 2    score: 15.5 bits;  conditional E-value: 1e-05
   TIGR01656  99 dcr.KPkpglilealkrlgvda.srslvvGDr.ldDvqaarkaGaaayv 144
                 d++ KP+pg +++++++ ++ + s+ l+vGD+  +Dv  +r+ G+   +
  MMETSP1137-20121227|4738_1 113 DVPpKPHPGALERIARQWNMPLgSHILMVGDSpSNDVVFGRNGGVST-A 160
                 4455***************98846889*****999*******99876.4 PP

>> TIGR01459  HAD-SF-IIA-hyp4: HAD hydrolase, TIGR01459 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0       2.4   6.2e+02      33      42 ..      67      76 ..      32      97 .. 0.52
   2 !   16.3   0.0   4.2e-06    0.0011     195     241 ..     117     163 ..     114     164 .. 0.96

  Alignments for each domain:
  == domain 1    score: -2.6 bits;  conditional E-value: 2.4
   TIGR01459 33 laklkaegkt 42
                l  l+++g +
  MMETSP1137-20121227|4738_1 67 LLWLRRHGIP 76
                3333344444 PP

  == domain 2    score: 16.3 bits;  conditional E-value: 4.2e-06
   TIGR01459 195 kPypaifdkalkeleerekrrvllvGDslvtDiaganavgidtalvl 241
                 kP+p + + + ++ + +   ++l+vGDs  +D++ + + g+ talv 
  MMETSP1137-20121227|4738_1 117 KPHPGALERIARQWNMPLGSHILMVGDSPSNDVVFGRNGGVSTALVA 163
                 9********************************************96 PP

>> TIGR02254  YjjG/YfnB: HAD hydrolase, TIGR02254 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0   4.4e-06    0.0011     122     202 ..      88     168 ..      30     181 .. 0.72

  Alignments for each domain:
  == domain 1    score: 16.3 bits;  conditional E-value: 4.4e-06
   TIGR02254 122 vrevqekrlrksglapffdrvlvsEdaGiekPdkkiFafaleri.klkkeevlmvGDsleaDikGaanaGldtvwlnpdrkp 202
                 vre+  k   +sgl  f d  +  +d    kP+++  + +  +   +  ++ lmvGDs++ D++ ++n G+ t ++    ++
  MMETSP1137-20121227|4738_1  88 VRELHRKLKVESGLPAF-DPAISRDDDVPPKPHPGALERIARQWnMPLGSHILMVGDSPSNDVVFGRNGGVSTALVAGSGRS 168
                 56666666667777655.44444444445788888877777777456789***********************998776665 PP

>> TIGR01488  HAD-SF-IB: HAD phosphoserine phosphatase-like hydrolase, family IB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   1.2e-05    0.0031       6     115 ..       1     101 [.       1     148 [. 0.75

  Alignments for each domain:
  == domain 1    score: 15.3 bits;  conditional E-value: 1.2e-05
   TIGR01488   6 fDgTLtdqdsliellkkllgtndevkeltrlvlegrisfedrlgrrlkllerslleelakeflakevairpgarelikwlkekGiklvivSggldflveklaeklgidk.v 115
                 +DgTLt    ++ l+ k++g  d+ +++ ++v++ +    + +++         +e+++ ++ a++  +++ga  ++ wl+ +Gi +++v+ +    v++l +kl++++ +
  MMETSP1137-20121227|4738_1   1 MDGTLTVPNIDFGLMYKRCGV-DRSSDILAEVRNMSPAQAATANEI--------IEKMEADAAATM-ELEKGAAPMLLWLRRHGIPTALVTRNSAVTVRELHRKLKVESgL 101
                 688888888888888888887.677777776664443333333322........344444344444.6669************************************9863 PP

>> TIGR00870  trp: transient-receptor-potential calcium channel protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.7   0.0   4.1e-05      0.01     109     159 ..     226     276 ..     219     292 .. 0.85
   2 ?   -1.0   0.0      0.29        74     132     156 ..     317     341 ..     310     352 .. 0.84

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 4.1e-05
   TIGR00870 109 aarksltlselandestseftkgitalilAihkqnyeivklLlekgasvea 159
                 ++++  +l+++a ++   +   g t+li A+   ++  vk Ll+ g++v+ 
  MMETSP1137-20121227|4738_1 226 KNGDVAALRNFALEQLDAQDESGNTPLIWAADAGQLDAVKFLLDAGVNVNT 276
                 555666778899999999999****************************94 PP

  == domain 2    score: -1.0 bits;  conditional E-value: 0.29
   TIGR00870 132 italilAihkqnyeivklLlekgas 156
                 +++l+ A+ k+    v  Ll  gas
  MMETSP1137-20121227|4738_1 317 QSPLHFAAFKKHRDAVDKLLVHGAS 341
                 89************99888888885 PP

>> TIGR01422  phosphonatase: phosphonoacetaldehyde hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   0.0   2.5e-05    0.0063      83     205 ..      43     167 ..      29     185 .. 0.80

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 2.5e-05
   TIGR01422  83 yeafepllleklaeyaelipgvlevvaklrargikigsttGYtrevldvvlkaAa.aqGy.rpdlvvaaddvpagRPaPamilknvielgvedvaavvKvdDt.vpdieeGrnAgvwtvgvilssn 205
                 +e +e++ +++ a + el +g+  ++ +lr++gi  +  t  ++  + ++  + + ++G+ + d  ++ dd +  +P P  + +++ + ++   ++++ v+D+  +d+  Grn gv t  v  s+ 
  MMETSP1137-20121227|4738_1  43 NEIIEKMEADA-AATMELEKGAAPMLLWLRRHGIPTALVTRNSAVTVRELHRKLKvESGLpAFDPAISRDDDVPPKPHPGALERIARQWNMPLGSHILMVGDSpSNDVVFGRNGGVSTALVAGSGR 167
                 45555555554.5566899******************999988877777765554167773458899*9999999***************************94589********99987777665 PP

>> TIGR02252  DREG-2: HAD hydrolase, REG-2-like, family IA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00024     0.063      88     202 ..      39     160 ..      25     161 .. 0.77

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 0.00024
   TIGR02252  88 ekifeelyskFat..aeawkvvedlekllkklreeglklgvvS.NfDsrlrklLealglee...lfdfvvvSaevgaeKPdpkIFekaleklgik.peevlhiGDslekDvegakaaGlral 202
                 +  ++e+++k +   a++ ++ +++ ++l +lr++g+ +++v  N    +r+l ++l++e+    fd ++   +    KP p   e+  ++ ++   +++l +GDs  +Dv   ++ G++ +
  MMETSP1137-20121227|4738_1  39 AATANEIIEKMEAdaAATMELEKGAAPMLLWLRRHGIPTALVTrNSAVTVRELHRKLKVESglpAFDPAISRDDDVPPKPHPGALERIARQWNMPlGSHILMVGDSPSNDVVFGRNGGVSTA 160
                 566777877776511456677789*************7776654999999***9*99996522267887777777779********9999999762689**************999998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (373 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       110  (0.0268162); expected 82.0 (0.02)
Passed bias filter:                      104  (0.0253535); expected 82.0 (0.02)
Passed Vit filter:                        26  (0.00633837); expected 4.1 (0.001)
Passed Fwd filter:                        16  (0.00390054); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              16  [number of targets reported over threshold]
# CPU time: 0.36u 0.16s 00:00:00.52 Elapsed: 00:00:00.76
# Mc/sec: 647.79
//
Query:       MMETSP1137-20121227|4740_1  [L=542]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (542 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        59  (0.0143832); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.14s 00:00:00.49 Elapsed: 00:00:00.50
# Mc/sec: 1430.76
//
Query:       MMETSP1137-20121227|4742_1  [L=402]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (402 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        73  (0.0177962); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.13s 00:00:00.42 Elapsed: 00:00:00.50
# Mc/sec: 1061.19
//
Query:       MMETSP1137-20121227|4743_1  [L=219]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.2e-17   60.1   0.0      3e-15   54.1   0.0    2.1  1  TIGR00481 TIGR00481: Raf kinase inhibitor-like protein, YbhB/YbcL family


Domain annotation for each model (and alignments):
>> TIGR00481  TIGR00481: Raf kinase inhibitor-like protein, YbhB/YbcL family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.1   0.0   7.3e-19     3e-15      10     139 ..      39     215 ..      31     217 .. 0.87

  Alignments for each domain:
  == domain 1    score: 54.1 bits;  conditional E-value: 7.3e-19
   TIGR00481  10 edgeniSpklswddvpegakslaltli.DpDApkvvG..fvHWvvvNipadvtelpenas.ekakrlvq.gk.............................................alqgrndfgkagykGpcPPkgdHrYllkvyAldiekldldagasleellekleehilaeaeie 139
                  d +n+Sp+l+w++vp+++ s++l+++ +p A +++    vHW+v  ip+d+te+ e+ s   ++ +   g                                              a +g++ fg + y+Gp   k     ++k+yAl    l+l  gas++++  +l++++l++a ++
  MMETSP1137-20121227|4743_1  39 GDEDNVSPPLKWSGVPKNTESFVLIVDsEPPASSKAKkrKVHWMVYDIPKDITEIREELSgAGSSDVARlGMkddagqapvvvdpmgsidgwvdpevkamqdmihgaldasydernrAKEGSTSFGSTYYRGPS--KSGAVITFKLYALSSR-LELPRGASKDDVVAALKGKVLGKATLT 215
                 5899********************9963677877777789******************99644443332143778899********************************999999888999999999***964..5557899******998.**********************99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (219 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        57  (0.0138957); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.20u 0.11s 00:00:00.31 Elapsed: 00:00:00.45
# Mc/sec: 642.35
//
Query:       MMETSP1137-20121227|4744_1  [L=76]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (76 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        52  (0.0126767); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:00.36
# Mc/sec: 278.64
//
Query:       MMETSP1137-20121227|4745_1  [L=542]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.5e-20   68.9   0.1    3.9e-09   33.8   0.0    2.2  2  TIGR01622 SF-CC1: splicing factor, CC1-like family
    1.2e-15   55.8   1.5    5.8e-07   27.2   0.0    3.1  3  TIGR01661 ELAV_HUD_SF: ELAV/HuD family splicing factor
    1.6e-15   55.1   6.6    3.1e-07   27.8   0.0    3.1  3  TIGR01628 PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family
    2.2e-13   47.4   0.0      3e-07   27.1   0.0    2.1  2  TIGR01642 U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor
    1.3e-12   45.8   0.4    2.8e-06   25.0   0.0    2.5  3  TIGR01659 sex-lethal: sex-lethal family splicing factor
      6e-10   36.3   0.1    2.9e-07   27.4   0.0    3.3  4  TIGR01645 half-pint: poly-U binding splicing factor, half-pint family
    9.8e-10   35.6   0.0      6e-05   19.8   0.0    2.5  2  TIGR01648 hnRNP-R-Q: hnRNP-R, Q splicing factor family


Domain annotation for each model (and alignments):
>> TIGR01622  SF-CC1: splicing factor, CC1-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.8   0.0   6.7e-12   3.9e-09     220     274 ..      76     130 ..      67     149 .. 0.91
   2 !   32.8   0.0   1.4e-11   8.3e-09     216     275 ..     188     247 ..     177     278 .. 0.83

  Alignments for each domain:
  == domain 1    score: 33.8 bits;  conditional E-value: 6.7e-12
   TIGR01622 220 lkLYvGnlhfnitEqeLrqiFepFGeielvqlqkDpetGrskGyGFiqFsdaeea 274
                  k++vG+l  + t + Lr  Fe FG+i +  ++kD  tG  +G+GF++++  + a
  MMETSP1137-20121227|4745_1  76 GKIFVGGLSRETTTNGLRVYFERFGDISDCVVMKDRSTGAPRGFGFVTYVSQGIA 130
                 589**********************************************977655 PP

  == domain 2    score: 32.8 bits;  conditional E-value: 1.4e-11
   TIGR01622 216 siadlkLYvGnlhfnitEqeLrqiFepFGeielvqlqkDpetGrskGyGFiqFsdaeeak 275
                  ++ +k++vG+l  +  E +  q F  +G++ +  ++ Dp+t + +G+GFi+++ +e   
  MMETSP1137-20121227|4745_1 188 DAGSKKIFVGGLSHETGEADFVQYFGTYGNVIDCVIMCDPHTRKPRGFGFITYETSESVD 247
                 57899************************************************9988654 PP

>> TIGR01661  ELAV_HUD_SF: ELAV/HuD family splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.9   0.0     4e-08   2.4e-05       9      58 ..      81     130 ..      75     137 .. 0.86
   2 !   27.2   0.0   9.9e-10   5.8e-07     233     333 ..     149     260 ..     137     267 .. 0.70
   3 ?    2.6   1.1     0.029        17     152     245 ..     396     482 ..     388     506 .. 0.75

  Alignments for each domain:
  == domain 1    score: 21.9 bits;  conditional E-value: 4e-08
   TIGR01661   9 nylPqtmtqeeirslftsiGeiescklvrdkvtGqslGyGfvnyvreeda 58 
                   l ++ t + +r  f  +G+i  c +++d++tG   G+Gfv yv +  a
  MMETSP1137-20121227|4745_1  81 GGLSRETTTNGLRVYFERFGDISDCVVMKDRSTGAPRGFGFVTYVSQGIA 130
                 557778899999*********************************98655 PP

  == domain 2    score: 27.2 bits;  conditional E-value: 9.9e-10
   TIGR01661 233 havaqqaaaqrasplaadgavaglaagaqiaa......sdgagycifvynlspdtdeavl.qlfgpfGavqsvkiirdlttnkckGygfvsmtnyde....aalailslnGy 333
                 +av++++   + sp+++     +l ++++ a       +d+    ifv  ls +t ea + q fg +G v +  i+ d++t+k +G+gf++    +      a+  + lnG 
  MMETSP1137-20121227|4745_1 149 RAVPRDSEVLSRSPPTSTPNGHSLPTQPHXAPvmsasvTDAGSKKIFVGGLSHETGEADFvQYFGTYGNVIDCVIMCDPHTRKPRGFGFITYETSESvdrvCANKFHDLNGK 260
                 566666666667777776666666655554444444445555678**********998655*****************************9765443111123445556665 PP

  == domain 3    score: 2.6 bits;  conditional E-value: 0.029
   TIGR01661 152 nGttPsgatepitvkfannPsssnskallsdleavlnaqltrvprstiltaaaiaplhkaaakfrlsaldflavlakrlqqhavaqqaaaqras 245
                 nG+  s+a  p        P + ns+a++ +le ++++q+ +  +       ++  lh ++a+ r+++ +++  +++++  ha +      +a+
  MMETSP1137-20121227|4745_1 396 NGQDASNADGPXHSTSPRVPQKMNSHAFQEKLEHLQQQQNLLQQL-------QQHQLHLQLAQQRHNQQQMTLXMMHQQPLHAQPGXPXPPSAA 482
                 788888888888888888899999999**9999999999988444.......667888888888888888888888888877766544433333 PP

>> TIGR01628  PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.8   0.0   5.2e-10   3.1e-07     287     354 ..      77     143 ..      68     156 .. 0.84
   2 !   23.1   0.0   1.4e-08   8.1e-06      87     144 ..     190     248 ..     182     275 .. 0.59
   3 ?    3.2   2.8     0.015       8.6     401     436 ..     437     472 ..     361     519 .. 0.53

  Alignments for each domain:
  == domain 1    score: 27.8 bits;  conditional E-value: 5.2e-10
   TIGR01628 287 NlYvkNlddtvddekLrelFeefGeitSakvmld.ekekSkgFGFVcfssqeeAnkAvtelhgkilngk 354
                  ++v  l  + + + Lr  Fe+fG+i  + vm d  ++  +gFGFV++ sq  A   v  lh ++++gk
  MMETSP1137-20121227|4745_1  77 KIFVGGLSRETTTNGLRVYFERFGDISDCVVMKDrSTGAPRGFGFVTYVSQGIADLVV--LHRHVIDGK 143
                 57788889999999********************78899***********98886554..677777766 PP

  == domain 2    score: 23.1 bits;  conditional E-value: 1.4e-08
   TIGR01628  87 GvgNifvKnLdksidnkaLfdtFskfGnilsckvatdee.GkSkgYgfvhfedeesAke 144
                 G   ifv  L ++  ++   + F ++Gn++ c +++d +  k +g+gf+ +e+ es + 
  MMETSP1137-20121227|4745_1 190 GSKKIFVGGLSHETGEADFVQYFGTYGNVIDCVIMCDPHtRKPRGFGFITYETSESVDR 248
                 55566666666666666666666666666666666664313556666666666666543 PP

  == domain 3    score: 3.2 bits;  conditional E-value: 0.015
   TIGR01628 401 hqaaqqqavvtqavkqqlasqplnfkinqmmlstqn 436
                  q  qq++++ q  +q  ++q+++  ++++++ + +
  MMETSP1137-20121227|4745_1 437 LQQLQQHQLHLQLAQQRHNQQQMTLXMMHQQPLHAQ 472
                 122222222222222222222222222222222222 PP

>> TIGR01642  U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.1   0.0   5.2e-10     3e-07     297     368 ..      76     150 ..      36     179 .. 0.82
   2 !   18.4   0.0   2.3e-07   0.00013     288     374 ..     182     268 ..     160     284 .. 0.81

  Alignments for each domain:
  == domain 1    score: 27.1 bits;  conditional E-value: 5.2e-10
   TIGR01642 297 dklyignLPldlkddqvkeLLesFGdLkaFnliKdlatGlsKGyaFceykdssvtdlAi...aaLnGiklgdkkL 368
                  k+++g+L  + + + ++   e FGd+    ++Kd+ tG  +G++F+ y+   ++dl +   + ++G+++  k+ 
  MMETSP1137-20121227|4745_1  76 GKIFVGGLSRETTTNGLRVYFERFGDISDCVVMKDRSTGAPRGFGFVTYVSQGIADLVVlhrHVIDGKEVEAKRA 150
                 69******************************************************9873334555655555444 PP

  == domain 2    score: 18.4 bits;  conditional E-value: 2.3e-07
   TIGR01642 288 nsktvld.sedklyignLPldlkddqvkeLLesFGdLkaFnliKdlatGlsKGyaFceykdssvtdlAiaaLnGiklgdkkLnvkrAt 374
                  s +v+d + +k+++g+L ++ ++   ++    +G++    ++ d +t + +G++F+ y+ s   d  +a     +l +k+++vkrA+
  MMETSP1137-20121227|4745_1 182 MSASVTDaGSKKIFVGGLSHETGEADFVQYFGTYGNVIDCVIMCDPHTRKPRGFGFITYETSESVDRVCAN-KFHDLNGKRVEVKRAI 268
                 444444426789**************************************************999988764.4556777777777776 PP

>> TIGR01659  sex-lethal: sex-lethal family splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.0   0.0   4.7e-09   2.8e-06     188     244 ..      70     126 ..      64     136 .. 0.93
   2 !   18.3   0.0   5.2e-07   0.00031     196     248 ..     194     246 ..     184     254 .. 0.87
   3 ?   -3.3   0.1         2   1.2e+03     291     320 ..     396     425 ..     365     444 .. 0.47

  Alignments for each domain:
  == domain 1    score: 25.0 bits;  conditional E-value: 4.7e-09
   TIGR01659 188 gesikdtnlyvtnlprtitddqldtifgkygsivqknilrdkltgkprgvafvrfnk 244
                 ge++    ++v  l+r  t + l   f ++g i +  +++d+ tg prg  fv +  
  MMETSP1137-20121227|4745_1  70 GEQLELGKIFVGGLSRETTTNGLRVYFERFGDISDCVVMKDRSTGAPRGFGFVTYVS 126
                 999999***********************************************9965 PP

  == domain 2    score: 18.3 bits;  conditional E-value: 5.2e-07
   TIGR01659 196 lyvtnlprtitddqldtifgkygsivqknilrdkltgkprgvafvrfnkreea 248
                 ++v  l+    + ++   fg yg++++  i+ d +t kprg  f+ ++  e  
  MMETSP1137-20121227|4745_1 194 IFVGGLSHETGEADFVQYFGTYGNVIDCVIMCDPHTRKPRGFGFITYETSESV 246
                 678888888888888899*****************************988765 PP

  == domain 3    score: -3.3 bits;  conditional E-value: 2
   TIGR01659 291 kygeygtgnggvaggsaanlpqppafmgan 320
                 ++ +  +++g   ++s+  +++++ +   +
  MMETSP1137-20121227|4745_1 396 NGQDASNADGPXHSTSPRVPQKMNSHAFQE 425
                 222222233333333344444444444444 PP

>> TIGR01645  half-pint: poly-U binding splicing factor, half-pint family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.5   0.5       2.4   1.4e+03     292     304 ..      12      24 ..       5      52 .. 0.53
   2 !   15.1   0.0   2.7e-06    0.0016     207     250 ..      82     125 ..      67     134 .. 0.84
   3 !   27.4   0.0     5e-10   2.9e-07     191     280 ..     182     269 ..     169     299 .. 0.81
   4 ?  -11.5   9.1         7   4.1e+03      75     106 ..     433     464 ..     410     467 .. 0.75

  Alignments for each domain:
  == domain 1    score: -4.5 bits;  conditional E-value: 2.4
   TIGR01645 292 alPaaaavaaaaa 304
                 al aaaavaa a 
  MMETSP1137-20121227|4745_1  12 ALHAAAAVAAXAL 24 
                 3334444444332 PP

  == domain 2    score: 15.1 bits;  conditional E-value: 2.7e-06
   TIGR01645 207 svhpdlseedlksvfeafGeivkcklaraptlrkhkGfGflefe 250
                  + ++ + + l+  fe fG+i +c + ++ +++  +GfGf+ + 
  MMETSP1137-20121227|4745_1  82 GLSRETTTNGLRVYFERFGDISDCVVMKDRSTGAPRGFGFVTYV 125
                 55566667789999***************************986 PP

  == domain 3    score: 27.4 bits;  conditional E-value: 5e-10
   TIGR01645 191 idevqeeakkfnri.vasvhpdlseedlksvfeafGeivkcklaraptlrkhkGfGflefenlqsqseaiasmnlfdlGGqllrvGkavtP 280
                 +     +a +  +i v  +  +  e d    f ++G++++c +  +p +rk +GfGf+ +e  +s +  +++  + dl G+ + v +a+ P
  MMETSP1137-20121227|4745_1 182 MSASVTDAGSK-KIfVGGLSHETGEADFVQYFGTYGNVIDCVIMCDPHTRKPRGFGFITYETSESVDR-VCANKFHDLNGKRVEVKRAI-P 269
                 55555566555.344888999999*************************************9999865.6667899*****99999988.4 PP

  == domain 4    score: -11.5 bits;  conditional E-value: 7
   TIGR01645  75 kqvllkqtlahqkqqlenqqrqvqrqqalaim 106
                 +q ll+q   hq   + +qqr  q+q +l +m
  MMETSP1137-20121227|4745_1 433 QQNLLQQLQQHQLHLQLAQQRHNQQQMTLXMM 464
                 45678887778877666777777999999888 PP

>> TIGR01648  hnRNP-R-Q: hnRNP-R, Q splicing factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   0.0     1e-07     6e-05      45     112 ..      63     130 ..      59     151 .. 0.92
   2 !   13.3   0.0   9.6e-06    0.0056      55     114 ..     187     248 ..     174     279 .. 0.80

  Alignments for each domain:
  == domain 1    score: 19.8 bits;  conditional E-value: 1e-07
   TIGR01648  45 GPPPgyegaqPerGcevfvGkiPrdlyedelvPlfekvGkiyelrlmmd.ldGknrGyafvtfcnkeea 112
                 G PP   g q e G  +fvG + r+   + l   fe+ G i +  +m d   G  rG+ fvt+  +  a
  MMETSP1137-20121227|4745_1  63 GAPPKLRGEQLELG-KIFVGGLSRETTTNGLRVYFERFGDISDCVVMKDrSTGAPRGFGFVTYVSQGIA 130
                 78999******999.7*********************************889***********987666 PP

  == domain 2    score: 13.3 bits;  conditional E-value: 9.6e-06
   TIGR01648  55 PerGc.evfvGkiPrdlyedelvPlfekvGkiyelrlmmd.ldGknrGyafvtfcnkeeake 114
                  + G+  +fvG +  +  e ++v  f + G++ +  +m d    k rG+ f+t+   e   +
  MMETSP1137-20121227|4745_1 187 TDAGSkKIFVGGLSHETGEADFVQYFGTYGNVIDCVIMCDpHTRKPRGFGFITYETSESVDR 248
                 5555426*********************************99999*********88776655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (542 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       179  (0.0436373); expected 82.0 (0.02)
Passed bias filter:                      120  (0.029254); expected 82.0 (0.02)
Passed Vit filter:                        23  (0.00560702); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.56u 0.18s 00:00:00.74 Elapsed: 00:00:00.57
# Mc/sec: 1233.42
//
Query:       MMETSP1137-20121227|4746_1  [L=281]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.1e-14   49.7   0.1      9e-14   48.9   0.1    1.4  1  TIGR00959 ffh: signal recognition particle protein
    4.4e-06   23.6   0.1    5.7e-06   23.3   0.0    1.1  1  TIGR01425 SRP54_euk: signal recognition particle protein SRP54


Domain annotation for each model (and alignments):
>> TIGR00959  ffh: signal recognition particle protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.9   0.1   4.4e-17     9e-14     308     424 ..      51     180 ..      37     184 .. 0.87

  Alignments for each domain:
  == domain 1    score: 48.9 bits;  conditional E-value: 4.4e-17
   TIGR00959 308 evvdeeeakklaeklakeefdleDlleqlrqikklGslskllkmlPglgkvkksekdldedekklkrieaiissmtkeErknpkil...........n..asRkkRiakGsGtsvsdvnklikefeqakk 424
                 + +++ee ++++++++++e+ ++D+l+q++ ++k Gsl+++++  P  g+  +++++l e ekklkr +  +++m ++Er + ++l           n  ++R+ Ria+ +G ++++++ +i ef++ ++
  MMETSP1137-20121227|4746_1  51 DGLSDEEKASMEQRFKSGEMSFNDFLTQVNIMQKAGSLQQFMSRTPFGGGGGPNSQQLAEGEKKLKRYREFVEAMDEQERLDTSLLiaedkelrsgaNasPERMTRIATATGATLDQISTFISEFDTLRS 180
                 5577899999************************************999999****************************99988755555445444344679**********************98876 PP

>> TIGR01425  SRP54_euk: signal recognition particle protein SRP54
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.3   0.0   2.8e-09   5.7e-06     311     425 ..      54     178 ..      33     181 .. 0.74

  Alignments for each domain:
  == domain 1    score: 23.3 bits;  conditional E-value: 2.8e-09
   TIGR01425 311 lddeekelieklkeGkftlrdlkeqlqnllkmGplgnilsmipGlssellskgneeessaklkkllvildsmtdke.ldstd.....kvll....keesrivrvarGsGraireveelleqykkl 425
                  d+e+ ++ +++k G++++ d+  q++ ++k G l + +s  p  +    +  +  e+++klk++   +++m ++e ld++      k l       + r++r+a  +G+++ ++++++ ++ +l
  MMETSP1137-20121227|4746_1  54 SDEEKASMEQRFKSGEMSFNDFLTQVNIMQKAGSLQQFMSRTPFGGGGGPNSQQLAEGEKKLKRYREFVEAMDEQErLDTSLliaedKELRsganASPERMTRIATATGATLDQISTFISEFDTL 178
                 45666688899******************************995444445555566778999999999999998885665431111244321111357899999999999999999998887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (281 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        93  (0.0226719); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.26u 0.16s 00:00:00.42 Elapsed: 00:00:00.63
# Mc/sec: 588.71
//
Query:       MMETSP1137-20121227|4747_1  [L=397]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-06   26.1   0.0    2.6e-06   25.3   0.0    1.4  1  TIGR02072 BioC: biotin biosynthesis protein BioC
    1.7e-05   22.0   0.0    3.2e-05   21.2   0.0    1.3  1  TIGR01934 MenG_MenH_UbiE: ubiquinone/menaquinone biosynthesis methyltransferase
  ------ inclusion threshold ------
       0.03   10.6   0.0      0.042   10.1   0.0    1.1  1  TIGR04074 bacter_Hen1: 3' terminal RNA ribose 2'-O-methyltransferase Hen1


Domain annotation for each model (and alignments):
>> TIGR02072  BioC: biotin biosynthesis protein BioC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.3   0.0   1.9e-09   2.6e-06      26     150 ..     193     313 ..     177     336 .. 0.82

  Alignments for each domain:
  == domain 1    score: 25.3 bits;  conditional E-value: 1.9e-09
   TIGR02072  26 llkekrkfepakvLdiGcGtGiltrallkrfpqae.....lialDiseemleqakkklsnvqficgdieklplekksfDlivSnlalQWlddlsevlaelarvlkpgGllafstfgketlkElrqlfkqv 150
                 + ++k   e+ +vL +GcG G++ r  +k +++ae     l  +D s+   + a ++++   f  ++ ++lp+++ sfD++ ++ +        +  +e++rvl+pgG ++ +  g e l +lr + +++
  MMETSP1137-20121227|4747_1 193 FPRKK--GERPQVLFAGCGEGVYMRRTQKLLEAAEvrrvqLWGTDASKLAVRYAARRQPLARFAVASSHRLPFADGSFDVVCASFS-------PSSWDEFCRVLRPGGAVITARAGFEHLLQLRHAAGAA 313
                 44454..45679***********99999988777622222577899999999999999999********************99975.......44789**************************998865 PP

>> TIGR01934  MenG_MenH_UbiE: ubiquinone/menaquinone biosynthesis methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.0   2.3e-08   3.2e-05      40     140 ..     200     294 ..     184     298 .. 0.84

  Alignments for each domain:
  == domain 1    score: 21.2 bits;  conditional E-value: 2.3e-08
   TIGR01934  40 eekvlDvatGtGdlaielakkae......akvtgvDlseemLevakkkakekeeanvefieadaeeLpfednsfdavtiafGlRNvtdiekaLkelaRVlkpggrlv 140
                   +vl   +G G  + +++k  e       ++ g+D s+  ++ a+++ +      ++f +a+ ++Lpf+d sfd+v  +f            +e+ RVl+pgg ++
  MMETSP1137-20121227|4747_1 200 RPQVLFAGCGEGVYMRRTQKLLEaaevrrVQLWGTDASKLAVRYAARRQP-----LARFAVASSHRLPFADGSFDVVCASF-------SPSSWDEFCRVLRPGGAVI 294
                 55677788999999999998877777877888999**9999999999964.....468***********************.......5788999999999999875 PP

>> TIGR04074  bacter_Hen1: 3' terminal RNA ribose 2'-O-methyltransferase Hen1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0   3.1e-05     0.042     266     345 ..     182     267 ..     171     273 .. 0.80

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 3.1e-05
   TIGR04074 266 laeqRleavvaalresgar.svlDlGcGegkLlk...aLlaekqfekiv..gvdvsareLekakrrlkldrlsekqrervellqss 345
                 +a++ + av++  r+ g r +vl  GcGeg  ++   +Ll+ +++++++  g+d s  +++ a+rr  l r + +  +r+ +  +s
  MMETSP1137-20121227|4747_1 182 VAQEVVRAVCDFPRKKGERpQVLFAGCGEGVYMRrtqKLLEAAEVRRVQlwGTDASKLAVRYAARRQPLARFAVASSHRLPFADGS 267
                 5666677888888887776579999*****876522279999999876444*******************9999999999888777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (397 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        92  (0.0224281); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.30u 0.18s 00:00:00.48 Elapsed: 00:00:00.41
# Mc/sec: 1278.04
//
Query:       MMETSP1137-20121227|4748_1  [L=54]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        33  (0.00804486); expected 82.0 (0.02)
Passed bias filter:                       33  (0.00804486); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.13s 00:00:00.23 Elapsed: 00:00:00.51
# Mc/sec: 139.75
//
Query:       MMETSP1137-20121227|4749_1  [L=196]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (196 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        64  (0.0156021); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.12s 00:00:00.30 Elapsed: 00:00:00.45
# Mc/sec: 574.89
//
Query:       MMETSP1137-20121227|4750_1  [L=299]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.021   10.3   2.8      0.027   10.0   1.9    1.0  1  TIGR02168 SMC_prok_B: chromosome segregation protein SMC


Domain annotation for each model (and alignments):
>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   1.9   6.6e-06     0.027     313     396 ..      85     168 ..      78     193 .. 0.49

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 6.6e-06
   TIGR02168 313 qlekeleeleeqleeleskkeeleeelaeleeeleelkeelesleaeleeaeaeleelesrleeleeeleelrsevaeleeqla 396
                 +l ++ e++ + + ++++  +el+e++a l+ ++++l+ +l+++ ++++++++ l +l+ + +++ +++ ++++  + + +++a
  MMETSP1137-20121227|4750_1  85 RLARKAESARQARLRHKQYVTELQEQVAGLQSRIKNLEVQLTAQPSAAQAFQELLGALQPEHKAQLQQWLTEAQGENHIMKRVA 168
                 344444444444444444444444444444444444444444444444444444444444444444444444444444444333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (299 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       161  (0.0392491); expected 82.0 (0.02)
Passed bias filter:                      119  (0.0290102); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.27u 0.16s 00:00:00.43 Elapsed: 00:00:00.46
# Mc/sec: 857.93
//
Query:       MMETSP1137-20121227|4751_1  [L=71]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (71 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                         9  (0.00219405); expected 82.0 (0.02)
Passed bias filter:                        4  (0.000975134); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.14s 00:00:00.26 Elapsed: 00:00:00.41
# Mc/sec: 228.57
//
Query:       MMETSP1137-20121227|4752_1  [L=402]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00013   19.6   8.1     0.0045   14.5   0.2    2.4  2  TIGR00803 nst: UDP-galactose transporter


Domain annotation for each model (and alignments):
>> TIGR00803  nst: UDP-galactose transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.2   1.1e-06    0.0045       5      95 ..     168     271 ..     165     278 .. 0.68
   2 !    6.5   3.9   0.00031       1.3     113     218 ..     257     360 ..     248     362 .. 0.79

  Alignments for each domain:
  == domain 1    score: 14.5 bits;  conditional E-value: 1.1e-06
   TIGR00803   5 PiliilkqnnlvlvalgnllaagkqvTqlkilstalmtlgslvaslgdkqwfslkl.lklgvaivqlvqssaktlseg............nlvvglsavlsall 95 
                 P ++  k   +v v++g+ll+ g++++ l++   +l+t+g++v ++g k++ s k+ + lg+  ++   + +k+l++g             l+++ls+ l+al+
  MMETSP1137-20121227|4752_1 168 PTQVLGKSCKMVPVMAGGLLLGGQKYSLLEYIQVLLITVGVVVFNFGGKKKKSGKAdSPLGLFLIGGSLVMDKQLNPGgsgakrpsmhesMLWTNLSGCLMALV 271
                 7888888999999*******************************999888777654244555555555554445555422222222222355555555555555 PP

  == domain 2    score: 6.5 bits;  conditional E-value: 0.00031
   TIGR00803 113 tsfyvrnlqlplfgllvtfvvlllsdgslisnkgffigyttavwivvllnvvgglcvglvvkyadnttksivlalsiilsllls.vrlfdaklsltfalgvilvfla 218
                 ++++ +     + ++l  + + l s ++++++     ++++a+++  ++++vg  ++   +    ++++  v+  ++i+s+l s +r + + ls++   g  lvf++
  MMETSP1137-20121227|4752_1 257 SMLWTNLSGCLMALVLAIATGQLASGFQFCKTHP---EVLRAIVVYSIASAVGQNFIYFTITQFNPLVLTTVTTTRKIFSTLFSvFRNPSNSLSSMQWTGCSLVFAG 360
                 5555555444444444445666666666666665...778888888899999999999999999999*****************99999***************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (402 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       136  (0.0331546); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.30u 0.13s 00:00:00.43 Elapsed: 00:00:00.51
# Mc/sec: 1040.38
//
Query:       MMETSP1137-20121227|4753_1  [L=317]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (317 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       121  (0.0294978); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.13s 00:00:00.38 Elapsed: 00:00:00.63
# Mc/sec: 664.14
//
Query:       MMETSP1137-20121227|4754_1  [L=168]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (168 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       124  (0.0302292); expected 82.0 (0.02)
Passed bias filter:                      118  (0.0287665); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.15s 00:00:00.32 Elapsed: 00:00:00.30
# Mc/sec: 739.14
//
Query:       MMETSP1137-20121227|4756_1  [L=234]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0076   12.3   4.9     0.0082   12.2   3.4    1.0  1  TIGR00844 c_cpa1: sodium/hydrogen antiporter


Domain annotation for each model (and alignments):
>> TIGR00844  c_cpa1: sodium/hydrogen antiporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.2   3.4     2e-06    0.0082     512     639 ..      43     173 ..      12     215 .. 0.72

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 2e-06
   TIGR00844 512 rrqklrdkkeieddielndlgrerlqkekearaatidlstavteqlgeeigragdleerekvnikerseavntiysldklaedtenkdvtrvetsrvdg...i.eseiddvdeyesdsesiaslerrrikkl 639
                 +  +l+++k +  ++  n+lg + l+ke+ +ra + + ++   e+ +e+  r++ ++  e+  ++e+ e+    y+ d  +++++ +   + +  r  +   i ++e dd d           +e+ r++ l
  MMETSP1137-20121227|4756_1  43 KDARLKNHKAVVAEDRRNKLGPDALKKERAERAYAKAKEDGHVETEEEKLLRTTAEQAGEHSYKMEKKEKRRGEYGWDVFNNEAQYRHYKK-QLRRSGDvgrIgNAEADDADPDPLAYGEARPVEQARVQAL 173
                 55689999************************************************************************99998876433.2222222112212233333332222233444555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (234 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       147  (0.0358362); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.21u 0.14s 00:00:00.35 Elapsed: 00:00:00.35
# Mc/sec: 882.44
//
Query:       MMETSP1137-20121227|4757_1  [L=223]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.5e-58  194.0   0.0    4.5e-58  193.7   0.0    1.1  1  TIGR03263 guanyl_kin: guanylate kinase
    9.7e-11   39.5   0.1    2.9e-10   37.9   0.1    1.7  1  TIGR02322 phosphon_PhnN: phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN
     0.0015   16.4   0.1     0.0039   15.0   0.0    1.6  2  TIGR03499 FlhF: flagellar biosynthesis protein FlhF
  ------ inclusion threshold ------
       0.01   11.9   0.0       0.02   10.9   0.0    1.4  2  TIGR00929 VirB4_CagE: type IV secretion/conjugal transfer ATPase, VirB4 family
      0.012   13.0   0.0      0.022   12.1   0.0    1.4  1  TIGR00157 TIGR00157: ribosome small subunit-dependent GTPase A
      0.028   10.9   0.0      0.047   10.1   0.0    1.3  1  TIGR02868 CydC: thiol reductant ABC exporter, CydC subunit


Domain annotation for each model (and alignments):
>> TIGR03263  guanyl_kin: guanylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  193.7   0.0   6.6e-61   4.5e-58       3     178 ..      37     208 ..      35     210 .. 0.96

  Alignments for each domain:
  == domain 1    score: 193.7 bits;  conditional E-value: 6.6e-61
   TIGR03263   3 livisgpsGvGKstlvkklle.ekeelklsvSattRkpRegEvdgkdYfFvskeefeekikeeeflEwaevvgnyyGtskkeveealkegkdvlleidvqGakqvkkklpeavsifilppsleeLeeRlkkRgtdseeviekRlekAkkelkaaee...fdyvivNddlekaveelksii 178
                  +v++gpsGvGK+tl++kl++   ee+ +svS+ttR+pR+gE+ g++Y+F+sk e+e+ i+++ef+E+a+v++n+yGts ++v+++ ++gk++ll+idvqGa+ vk++        i+pps++ LeeRl++Rgt++ee+i+ Rl++A++e+++ ++   f+ vivNddle a++elk  +
  MMETSP1137-20121227|4757_1  37 PVVVCGPSGVGKGTLLAKLMAeFPEEFGFSVSHTTRAPRPGEQPGVHYHFTSKPEMEAAIARGEFIEHANVHSNLYGTSVAAVQAVAEAGKTCLLDIDVQGAELVKRT--------IAPPSMQVLEERLRGRGTETEEKIQVRLQNARTEMAYRDKpgfFEKVIVNDDLECAYSELKCFL 208
                 68******************945567********************************************************************************98........79*************************************9999*****************9766 PP

>> TIGR02322  phosphon_PhnN: phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.9   0.1   4.3e-13   2.9e-10       4     150 ..      38     179 ..      35     210 .. 0.83

  Alignments for each domain:
  == domain 1    score: 37.9 bits;  conditional E-value: 4.3e-13
   TIGR02322   4 ilvvGpsGaGKDtlldlararladeprvlfarRv.itReadaggEdhealseeeFeeredegafalsWqahGlkYgipveidewleaGkvvvvngsRavlpeararyanllvvait.aspdvLaqRLaaRgResaeeieeRLarsaela 150
                 ++v GpsG GK tll+ + a++ +e  + + +     R+ +  g   +  s+ e e++ ++g f  + + h   Yg  v+  +       +v+ + ++ l  +  + a+l+  +i   s++vL +RL+ Rg e++e+i+ RL+ + +  
  MMETSP1137-20121227|4757_1  38 VVVCGPSGVGKGTLLAKLMAEFPEEFGFSVSHTTrAPRPGEQPGVHYHFTSKPEMEAAIARGEFIEHANVHSNLYGTSVAAVQ-------AVAEAGKTCLLDIDVQGAELVKRTIApPSMQVLEERLRGRGTETEEKIQVRLQNARTEM 179
                 799**********************9999998752569999999999999**************************9986544.......455566667777777778888888762579**********************9876654 PP

>> TIGR03499  FlhF: flagellar biosynthesis protein FlhF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   5.7e-06    0.0039     198     222 ..      35      59 ..      30      67 .. 0.85
   2 ?   -1.8   0.0      0.78   5.3e+02     133     154 ..     142     164 ..      87     192 .. 0.67

  Alignments for each domain:
  == domain 1    score: 15.0 bits;  conditional E-value: 5.7e-06
   TIGR03499 198 ggviaLvGptGvGKTTTlAKLAarf 222
                 ++ +++ Gp GvGK T lAKL a+f
  MMETSP1137-20121227|4757_1  35 KRPVVVCGPSGVGKGTLLAKLMAEF 59 
                 567999***************9987 PP

  == domain 2    score: -1.8 bits;  conditional E-value: 0.78
   TIGR03499 133 l.eeedperakllkklleagvse 154
                 +    +p+++ l+++l  +g + 
  MMETSP1137-20121227|4757_1 142 KrTIAPPSMQVLEERLRGRGTET 164
                 34455556666666666555543 PP

>> TIGR00929  VirB4_CagE: type IV secretion/conjugal transfer ATPase, VirB4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   2.9e-05      0.02     418     461 ..      12      59 ..       7      62 .. 0.84
   2 ?   -3.5   0.0      0.68   4.7e+02     156     199 ..     150     193 ..     140     198 .. 0.73

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 2.9e-05
   TIGR00929 418 tesgtPfyfNfHvrdakevlGhT....lIfGptgsGKTvllnfllaql 461
                 t  +tPf f + +  a    G+T    +++Gp+g GK +ll  l+a++
  MMETSP1137-20121227|4757_1  12 TAASTPFGFGPLKGSAALCDGNTkrpvVVCGPSGVGKGTLLAKLMAEF 59 
                 7788999999999997777777655558*****************986 PP

  == domain 2    score: -3.5 bits;  conditional E-value: 0.68
   TIGR00929 156 ikaleeilenllekleeygaealkeydkaglryselleflaelv 199
                 +++lee+l+    ++ee+++ +l+++ ++++  ++   f + +v
  MMETSP1137-20121227|4757_1 150 MQVLEERLRGRGTETEEKIQVRLQNARTEMAYRDKPGFFEKVIV 193
                 56778888888888888888888888888885555555555555 PP

>> TIGR00157  TIGR00157: ribosome small subunit-dependent GTPase A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   3.2e-05     0.022     121     159 ..      34      73 ..      24      89 .. 0.78

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 3.2e-05
   TIGR00157 121 kkrisvfaGqSGVGKSSLiNlldpevkqkvk.evseklkl 159
                 +kr  v+ G+SGVGK  L+ +l +e  ++    vs++++ 
  MMETSP1137-20121227|4757_1  34 TKRPVVVCGPSGVGKGTLLAKLMAEFPEEFGfSVSHTTRA 73 
                 6777899****************99988887677777665 PP

>> TIGR02868  CydC: thiol reductant ABC exporter, CydC subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0   6.9e-05     0.047     364     385 ..      38      59 ..      29      69 .. 0.84

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 6.9e-05
   TIGR02868 364 vavvGasGaGKstLlallagll 385
                 v v G+sG+GK tLla l+  +
  MMETSP1137-20121227|4757_1  38 VVVCGPSGVGKGTLLAKLMAEF 59 
                 789************9988655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (223 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       219  (0.0533886); expected 82.0 (0.02)
Passed bias filter:                      208  (0.050707); expected 82.0 (0.02)
Passed Vit filter:                        72  (0.0175524); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.32u 0.19s 00:00:00.51 Elapsed: 00:00:00.52
# Mc/sec: 566.03
//
Query:       MMETSP1137-20121227|4758_1  [L=110]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (110 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        40  (0.00975134); expected 82.0 (0.02)
Passed bias filter:                       34  (0.00828864); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.24
# Mc/sec: 604.95
//
Query:       MMETSP1137-20121227|4759_1  [L=234]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (234 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       120  (0.029254); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.15s 00:00:00.37 Elapsed: 00:00:00.49
# Mc/sec: 630.32
//
Query:       MMETSP1137-20121227|4760_1  [L=239]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (239 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        50  (0.0121892); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.14s 00:00:00.32 Elapsed: 00:00:00.33
# Mc/sec: 955.92
//
Query:       MMETSP1137-20121227|4761_1  [L=41]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (41 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        21  (0.00511945); expected 82.0 (0.02)
Passed bias filter:                       18  (0.0043881); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.15s 00:00:00.26 Elapsed: 00:00:00.27
# Mc/sec: 200.43
//
Query:       MMETSP1137-20121227|4762_1  [L=509]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.1e-12   44.0   6.6    6.3e-12   43.4   4.6    1.3  1  TIGR02349 DnaJ_bact: chaperone protein DnaJ
    2.3e-08   30.7   0.0    2.3e-08   30.7   0.0    1.9  2  TIGR03835 termin_org_DnaJ: terminal organelle assembly protein TopJ


Domain annotation for each model (and alignments):
>> TIGR02349  DnaJ_bact: chaperone protein DnaJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.4   4.6   3.1e-15   6.3e-12       1     117 [.     198     322 ..     198     335 .. 0.67

  Alignments for each domain:
  == domain 1    score: 43.4 bits;  conditional E-value: 3.1e-15
   TIGR02349   1 dYYeiLgvskdA.seeeikkAYrklakkyHPDrnkgekeaeekfkeineAyevLsdeekraqYDqfghagleggagg...........ggagfegfeasefgdigdifeeffgggggsgrr.rskarrge 117
                 d+Ye+ gv+++  + + +k+ Yr+l+   HPD+n+  + ae  f++ +eA+ vLsd   r++YD   h +  + + +           +    +++ +s++ +  ++ ++ + ++++++++ r+++++++
  MMETSP1137-20121227|4762_1 198 DHYEVFGVTQQRfDGSSLKSLYRQLSLALHPDKNH-ARGAERAFQRLSEAHGVLSDAALRSKYDVELHMKNLARGPHkkkpppqprayT----QSHAQSHTHTHTSTHSHAYTQQQQQQQQqRQQEQQQQ 322
                 89******987527899******************.99**************************8766554443333456776543221....2222233444445555555544443333222222222 PP

>> TIGR03835  termin_org_DnaJ: terminal organelle assembly protein TopJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.7   0.0   1.1e-11   2.3e-08       3      64 ..     198     260 ..     196     264 .. 0.94
   2 ?   -3.0   2.2      0.18   3.6e+02     412     457 ..     294     333 ..     274     353 .. 0.46

  Alignments for each domain:
  == domain 1    score: 30.7 bits;  conditional E-value: 1.1e-11
   TIGR03835   3 DyyevLgidrD.adeqeikkafrkLakkyhPDrnkaadaakifaeineandvLsnPkkraryD 64 
                 D+yev+g+++   d + +k  +r+L+   hPD+n+a  a++ f+ + ea+ vLs+   r +yD
  MMETSP1137-20121227|4762_1 198 DHYEVFGVTQQrFDGSSLKSLYRQLSLALHPDKNHARGAERAFQRLSEAHGVLSDAALRSKYD 260
                 99******98726999**********************************************9 PP

  == domain 2    score: -3.0 bits;  conditional E-value: 0.18
   TIGR03835 412 deatesnidwykqedpkdledlvqdqatleiteedqiseekveeet 457
                 +  t +  + y q++ ++ ++++q+q      +++q+s++   ++ 
  MMETSP1137-20121227|4762_1 294 HTHTSTHSHAYTQQQQQQQQQRQQEQ------QQQQASQHSHHQQQ 333
                 23333333344433333322222222......22222222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (509 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       542  (0.132131); expected 82.0 (0.02)
Passed bias filter:                      173  (0.0421745); expected 82.0 (0.02)
Passed Vit filter:                        39  (0.00950756); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.58u 0.19s 00:00:00.77 Elapsed: 00:00:00.51
# Mc/sec: 1317.30
//
Query:       MMETSP1137-20121227|4763_1  [L=839]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (839 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        72  (0.0175524); expected 82.0 (0.02)
Passed bias filter:                       42  (0.0102389); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.50u 0.15s 00:00:00.65 Elapsed: 00:00:00.61
# Mc/sec: 1815.39
//
Query:       MMETSP1137-20121227|4764_1  [L=299]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.8e-56  186.9   0.0    8.7e-56  186.5   0.0    1.1  1  TIGR01416 Rieske_proteo: ubiquinol-cytochrome c reductase, iron-sulfur subunit
      0.001   16.2   0.0     0.0019   15.3   0.0    1.4  1  TIGR02088 LEU3_arch: isopropylmalate/isohomocitrate dehydrogenases
     0.0063   14.3   0.0      0.011   13.5   0.0    1.4  1  TIGR02694 arsenite_ox_S: arsenite oxidase, small subunit


Domain annotation for each model (and alignments):
>> TIGR01416  Rieske_proteo: ubiquinol-cytochrome c reductase, iron-sulfur subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  186.5   0.0   6.3e-59   8.7e-56       4     175 ..      85     247 ..      82     248 .. 0.87

  Alignments for each domain:
  == domain 1    score: 186.5 bits;  conditional E-value: 6.3e-59
   TIGR01416   4 Rdflvlataa...vgavgaaavavplikslnpsakvkaagasvevdvskleegqlltvewrgkpvfilrrtkeeleelkalkkkeLkdpnseaeqtdearelrsgkeewlvvigiCtHLGCiPtlkpeegdkggffCpCHgskydlagrvvkgvPaPenlavPpykfesdtkili 175
                 R+f ++ ++    +ga +  ++++ +++++npsa+v a+ ++ evd+skl++g+ +tv+wrgkpvfi  rt++++ee+ a++  eL+dp     ++d++r+   +k+e lvv+g+CtHLGC+P ++ + gd+ g+fCpCHgs+yd++gr++kg PaP nl+vPpy+f +d+k+l+
  MMETSP1137-20121227|4764_1  85 RSFHYAMIGGarlIGASAWRLALIKFLAQMNPSAEVMAL-SQLEVDISKLNPGDCMTVKWRGKPVFIKSRTEADIEEAAAVNLGELRDP-----ESDADRV---TKPETLVVLGVCTHLGCVP-IA-NAGDYHGWFCPCHGSHYDTSGRIRKG-PAPLNLEVPPYQFLEDDKVLL 247
                 6666666555001555555667888889***********.79***********************************************.....5555544...579****************.55.699***********************.****************99875 PP

>> TIGR02088  LEU3_arch: isopropylmalate/isohomocitrate dehydrogenases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   1.4e-06    0.0019     235     265 ..     192     222 ..     186     234 .. 0.88

  Alignments for each domain:
  == domain 1    score: 15.3 bits;  conditional E-value: 1.4e-06
   TIGR02088 235 GslGlaPsaniGdkkalfePvhGsapdiaGk 265
                   lG +P an Gd +  f P hGs +d +G+
  MMETSP1137-20121227|4764_1 192 THLGCVPIANAGDYHGWFCPCHGSHYDTSGR 222
                 569************************9996 PP

>> TIGR02694  arsenite_ox_S: arsenite oxidase, small subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   0.0   7.9e-06     0.011      56      97 ..     189     229 ..     156     246 .. 0.81

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 7.9e-06
   TIGR02694  56 ilcthkGc.pvsyeadaktfkcpchfsvfdpekaGqqvlGqat 97 
                  +cth Gc p+    d + + cpch s +d   +G+   G a 
  MMETSP1137-20121227|4764_1 189 GVCTHLGCvPIANAGDYHGWFCPCHGSHYDT--SGRIRKGPAP 229
                 48*****98999999*************996..4555566555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (299 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        91  (0.0221843); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.24u 0.17s 00:00:00.41 Elapsed: 00:00:00.37
# Mc/sec: 1066.61
//
Query:       MMETSP1137-20121227|4765_1  [L=454]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (454 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       165  (0.0402243); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.16s 00:00:00.48 Elapsed: 00:00:00.52
# Mc/sec: 1152.37
//
Query:       MMETSP1137-20121227|4766_1  [L=1055]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1055 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       109  (0.0265724); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.63u 0.16s 00:00:00.79 Elapsed: 00:00:00.52
# Mc/sec: 2677.86
//
Query:       MMETSP1137-20121227|4767_1  [L=280]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (280 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       191  (0.0465627); expected 82.0 (0.02)
Passed bias filter:                       96  (0.0234032); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.16s 00:00:00.42 Elapsed: 00:00:00.28
# Mc/sec: 1319.89
//
Query:       MMETSP1137-20121227|4768_1  [L=102]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (102 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.13s 00:00:00.26 Elapsed: 00:00:00.27
# Mc/sec: 498.63
//
Query:       MMETSP1137-20121227|4769_1  [L=181]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0014   15.0   0.0     0.0017   14.8   0.0    1.0  1  TIGR01642 U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor
     0.0021   15.1   0.0     0.0028   14.7   0.0    1.2  1  TIGR01628 PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family


Domain annotation for each model (and alignments):
>> TIGR01642  U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   8.1e-07    0.0017     293     373 ..      88     167 ..      65     179 .. 0.89

  Alignments for each domain:
  == domain 1    score: 14.8 bits;  conditional E-value: 8.1e-07
   TIGR01642 293 ldsedklyignLPldlkddqvkeLLesFGdLkaFnliKdlatGlsKGyaFceykdssvtdlAiaaLnGiklgdkkLnvkrA 373
                    + +++++nL    + + v   L s G+L   +++ d++ G     a  ey  +  + +A+  L G +l + +++v  A
  MMETSP1137-20121227|4769_1  88 NAAKSRVFVKNLNEGTTWESVEAFLSSVGPLTHGKMLIDREGGGP-PAAIAEYASPASASIAVRRLTGSNLDGAMVTVSLA 167
                 55789***********************************98876.569**********************9999999877 PP

>> TIGR01628  PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0   1.3e-06    0.0028      88     161 ..      91     164 ..      72     169 .. 0.66

  Alignments for each domain:
  == domain 1    score: 14.7 bits;  conditional E-value: 1.3e-06
   TIGR01628  88 vgNifvKnLdksidnkaLfdtFskfGnilsckvatdeeGkSkgYgfvhfedeesAkeAieklNgvllndkevyv 161
                 ++ +fvKnL++  + +++    s+ G ++  k+  d eG     +  ++    sA+ A+ +l g  l+   v+v
  MMETSP1137-20121227|4769_1  91 KSRVFVKNLNEGTTWESVEAFLSSVGPLTHGKMLIDREGGGPPAAIAEYASPASASIAVRRLTGSNLDGAMVTV 164
                 44566666666666666666666666666666666666666666666666666666666666666666665555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (181 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        79  (0.0192589); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.19u 0.16s 00:00:00.35 Elapsed: 00:00:00.27
# Mc/sec: 884.82
//
Query:       MMETSP1137-20121227|4770_1  [L=103]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (103 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        71  (0.0173086); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.12s 00:00:00.27 Elapsed: 00:00:00.39
# Mc/sec: 348.59
//
Query:       MMETSP1137-20121227|4771_1  [L=175]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (175 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       156  (0.0380302); expected 82.0 (0.02)
Passed bias filter:                      108  (0.0263286); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.13s 00:00:00.33 Elapsed: 00:00:00.43
# Mc/sec: 537.16
//
Query:       MMETSP1137-20121227|4772_1  [L=440]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (440 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       134  (0.032667); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.14s 00:00:00.43 Elapsed: 00:00:00.63
# Mc/sec: 921.83
//
Query:       MMETSP1137-20121227|4773_1  [L=441]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (441 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       539  (0.131399); expected 82.0 (0.02)
Passed bias filter:                      129  (0.0314481); expected 82.0 (0.02)
Passed Vit filter:                       105  (0.0255973); expected 4.1 (0.001)
Passed Fwd filter:                        36  (0.00877621); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 1.61u 0.22s 00:00:01.83 Elapsed: 00:00:02.37
# Mc/sec: 245.60
//
Query:       MMETSP1137-20121227|4774_1  [L=96]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.012   13.5   0.1      0.029   12.2   0.1    1.6  2  TIGR00012 L29: ribosomal protein L29
      0.025   11.2   0.0      0.026   11.2   0.0    1.1  1  TIGR03278 methan_mark_10: methanogenesis marker radical SAM protein


Domain annotation for each model (and alignments):
>> TIGR00012  L29: ribosomal protein L29
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.1   1.4e-05     0.029       3      23 ..       9      29 ..       9      33 .. 0.93
   2 ?   -2.7   0.0      0.64   1.3e+03      17      27 ..      54      64 ..      50      70 .. 0.59

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 1.4e-05
   TIGR00012  3 rekskeELakklkelKkeLfe 23
                r++s +E+ak +kelK+ L++
  MMETSP1137-20121227|4774_1  9 RKMSLDEFAKLVKELKAFLAS 29
                99**************98875 PP

  == domain 2    score: -2.7 bits;  conditional E-value: 0.64
   TIGR00012 17 lKkeLfeLRfq 27
                +K+ L++ R  
  MMETSP1137-20121227|4774_1 54 NKTGLLSVREL 64
                56666666544 PP

>> TIGR03278  methan_mark_10: methanogenesis marker radical SAM protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   1.3e-05     0.026     222     271 ..       6      58 ..       4      92 .. 0.78

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 1.3e-05
   TIGR03278 222 eGikphtveefkelvreiakefn...lrvtGtPlldPetgaPfalakeeeell 271
                 +G ++ +++ef++lv+e ++  +      t +P +dP ++a fa  + ++  l
  MMETSP1137-20121227|4774_1   6 DGDRKMSLDEFAKLVKELKAFLAsqpAAATPAPTVDPLVSAAFATFDANKTGL 58 
                 688999***********9975543338899999**********9877665444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (96 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       103  (0.0251097); expected 82.0 (0.02)
Passed bias filter:                      100  (0.0243784); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.15u 0.16s 00:00:00.31 Elapsed: 00:00:00.33
# Mc/sec: 383.97
//
Query:       MMETSP1137-20121227|4775_1  [L=149]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (149 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        75  (0.0182838); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.17s 00:00:00.33 Elapsed: 00:00:00.56
# Mc/sec: 351.19
//
Query:       MMETSP1137-20121227|4776_1  [L=517]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (517 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        79  (0.0192589); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.15s 00:00:00.47 Elapsed: 00:00:00.66
# Mc/sec: 1033.91
//
Query:       MMETSP1137-20121227|4777_1  [L=486]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      1e-09   34.6   0.0    1.6e-09   34.0   0.0    1.3  1  TIGR03903 TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
    0.00011   19.6   0.0     0.0002   18.7   0.0    1.3  1  TIGR03724 arch_bud32: Kae1-associated kinase Bud32


Domain annotation for each model (and alignments):
>> TIGR03903  TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.0   0.0   7.7e-13   1.6e-09      83     187 ..       4     103 ..       1     135 [. 0.86

  Alignments for each domain:
  == domain 1    score: 34.0 bits;  conditional E-value: 7.7e-13
   TIGR03903  83 rLmlqvLDalaaahdaGvvhRDLkPqnimvsaadveshakvLDFGiga.LlpgvedadeatltrttevlGsPaYaaPeqLRgepvt..aksDlYaWGLivleCLtGkr 187
                  L++++L a+   h++GvvhRD+k +n +   + ++ + k++DFG +a + pg e           + +G+P+Y aPe   + +    +  D++a G++ +  L Gkr
  MMETSP1137-20121227|4777_1   4 TLVAKMLSAVLYCHNKGVVHRDIKLDNFIYEDEAEDAELKLIDFGFAAeVAPGNES--------MWDQIGTPSYMAPELWSDHSKAydSSVDMWAIGVVAFMLLSGKR 103
                 68999*****************************************9834556555........56789*********887665541166699999999999999986 PP

>> TIGR03724  arch_bud32: Kae1-associated kinase Bud32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.0   9.9e-08    0.0002      96     137 ..       6      51 ..       2      64 .. 0.83

  Alignments for each domain:
  == domain 1    score: 18.7 bits;  conditional E-value: 9.9e-08
   TIGR03724  96 lkevGelvgklHkagivhgDlttsNiivk....ddklyliDfGLgk 137
                 + ++  +v  +H++g+vh D+   N+i++    d +l liDfG + 
  MMETSP1137-20121227|4777_1   6 VAKMLSAVLYCHNKGVVHRDIKLDNFIYEdeaeDAELKLIDFGFAA 51 
                 56666788899*****************755557789******986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (486 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       124  (0.0302292); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.35u 0.14s 00:00:00.49 Elapsed: 00:00:00.50
# Mc/sec: 1282.93
//
Query:       MMETSP1137-20121227|4778_1  [L=208]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.8e-23   81.2   0.1    2.2e-23   80.9   0.0    1.1  1  TIGR01159 DRP1: density-regulated protein DRP1
      4e-09   34.3   0.3    8.7e-09   33.2   0.2    1.6  1  TIGR01158 SUI1_rel: putative translation initiation factor SUI1
    8.1e-07   27.4   0.0    1.2e-06   26.9   0.0    1.2  1  TIGR01160 SUI1_MOF2: translation initiation factor SUI1


Domain annotation for each model (and alignments):
>> TIGR01159  DRP1: density-regulated protein DRP1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.9   0.0   1.6e-26   2.2e-23      21     163 ..      46     193 ..      22     198 .. 0.71

  Alignments for each domain:
  == domain 1    score: 80.9 bits;  conditional E-value: 1.6e-26
   TIGR01159  21 erkaWleenapdlyakllladsssaevevak.igekqeekgekekkksqkkqeas.....egkkkkkklkqkvvikkiaRaKrk.vvvikGLevFdidlkkasklfakkFatG.svvksvte.keeiviqGDvsddivdlitekweevtdes 163
                 e ka l+en  +++++ + +    +  e  + +g + ++k +ke   sq k +a+      gkk kkk+   v+i+   R+K+k v+v+kGLe F++dl  a+k+f+kkFa G ++ k+ ++  ++i iqG+  d++  +i++k++ v  +s
  MMETSP1137-20121227|4778_1  46 ECKAALKENVENVFPDVKDEAGLLELLERLGlEGXAVGGKKKKE---SQPKPDAEgaaeaAGKKGKKKEVPSVLIELNNRNKKKfVTVVKGLESFGVDLAPAAKVFGKKFACGaALQKGKNGlPDQIEIQGNYRDELPGFIQDKYQ-VSMDS 193
                 45888899999999987655544444332222333333333333...3333332223344677778888899************9****************************88888888746********************96.44444 PP

>> TIGR01158  SUI1_rel: putative translation initiation factor SUI1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.2   0.2   6.4e-12   8.7e-09      20      92 ..     108     185 ..      83     193 .. 0.78

  Alignments for each domain:
  == domain 1    score: 33.2 bits;  conditional E-value: 6.4e-12
   TIGR01158  20 rpkedqvvrirrekkGRkGkevtiieGldlsdidlkelakeLKskcacGGtvkdg......viElQGdhrekvkelLek 92 
                 + ke   v i+ +++  k k vt+++Gl+   +dl   ak   +k+acG ++++g      +iE+QG+ r+ +  ++++
  MMETSP1137-20121227|4778_1 108 KKKEVPSVLIELNNR-NKKKFVTVVKGLESFGVDLAPAAKVFGKKFACGAALQKGknglpdQIEIQGNYRDELPGFIQD 185
                 447777888999999.888*********************************8763334447*********99777665 PP

>> TIGR01160  SUI1_MOF2: translation initiation factor SUI1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.9   0.0     9e-10   1.2e-06      27     107 ..     114     196 ..      87     198 .. 0.79

  Alignments for each domain:
  == domain 1    score: 26.9 bits;  conditional E-value: 9e-10
   TIGR01160  27 yihiriqqrnGrktlttvqGlkk.eydlkkllkalkkelacnGtvvedaelG..eviqlqGdqrkkvkeflieeglvkkdqiki 107
                  + i  ++rn +k +t v+Gl+    dl    k++ k++ac  ++ ++ + G  + i +qG+ r ++  f+ ++  v+ d i +
  MMETSP1137-20121227|4778_1 114 SVLIELNNRNKKKFVTVVKGLESfGVDLAPAAKVFGKKFACGAAL-QKGKNGlpDQIEIQGNYRDELPGFIQDKYQVSMDSIYV 196
                 4779999**************97579***************6665.5555443389*****************99999998865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (208 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       128  (0.0312043); expected 82.0 (0.02)
Passed bias filter:                      109  (0.0265724); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.22u 0.13s 00:00:00.35 Elapsed: 00:00:00.81
# Mc/sec: 338.93
//
Query:       MMETSP1137-20121227|4779_1  [L=524]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (524 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       105  (0.0255973); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.16s 00:00:00.54 Elapsed: 00:00:00.41
# Mc/sec: 1686.89
//
Query:       MMETSP1137-20121227|4780_1  [L=512]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0021   15.7   5.0     0.0021   15.7   3.5    1.8  2  TIGR03354 VI_FHA: type VI secretion system FHA domain protein


Domain annotation for each model (and alignments):
>> TIGR03354  VI_FHA: type VI secretion system FHA domain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.4     0.084   3.5e+02     176     204 ..     226     253 ..     183     322 .. 0.45
   2 !   15.7   3.5   5.2e-07    0.0021     137     228 ..     351     460 ..     335     506 .. 0.59

  Alignments for each domain:
  == domain 1    score: -1.4 bits;  conditional E-value: 0.084
   TIGR03354 176 lddgalsaelaeevaealpadlasidae.s 204
                 + +  l++ +++ +a++l+ d+++     +
  MMETSP1137-20121227|4780_1 226 MAP--LPHGMTPAMAAQLRRDAEKEKVRlA 253
                 333..3333333333222222222222211 PP

  == domain 2    score: 15.7 bits;  conditional E-value: 5.2e-07
   TIGR03354 137 dlddslteagegaaprpapqaasldPlkaldqepasaadlddga.....lsaelaeevae..alpadlasidaestlepelaplpaaqpapapqeqeq...........a 228
                 +ld +l e+++ aap     a +++P+++ d  +a+ + ++++      l++++  ++ e    ++++a++ +e+ ++p+++p+p++ p+p+p+++ +           +
  MMETSP1137-20121227|4780_1 351 ELDAFLDEPEPAAAPAALAPAPTKPPPEPFDPMEAPDRFFRNFKqrvsvLRDDVYAPPPErpIVRPAVAPPKSEPRIQPAPQPQPQPRPEPEPEDDSSalyltslaylaE 460
                 55666666666666665554445555555555555555555544445885555555555447788899999999999999997776666666665444333333333331 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (512 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       102  (0.0248659); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.16s 00:00:00.53 Elapsed: 00:00:00.61
# Mc/sec: 1107.84
//
Query:       MMETSP1137-20121227|4781_1  [L=259]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (259 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        39  (0.00950756); expected 82.0 (0.02)
Passed bias filter:                       31  (0.00755729); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.15s 00:00:00.36 Elapsed: 00:00:00.41
# Mc/sec: 833.78
//
Query:       MMETSP1137-20121227|4782_1  [L=490]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.9e-55  185.1  21.6    4.8e-55  184.8  15.0    1.0  1  TIGR00890 2A0111: oxalate/formate antiporter
  ------ inclusion threshold ------
      0.013   12.0  16.9      0.032   10.8  11.7    1.7  1  TIGR00892 2A0113: monocarboxylate transporter


Domain annotation for each model (and alignments):
>> TIGR00890  2A0111: oxalate/formate antiporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  184.8  15.0   2.4e-58   4.8e-55       6     377 .]      63     485 ..      59     485 .. 0.95

  Alignments for each domain:
  == domain 1    score: 184.8 bits;  conditional E-value: 2.4e-58
   TIGR00890   6 lvgtvimalvsgivYtwtllapalgrklrvk........vtavaiaftlllivlalsqvvgGkladkfGpravallggillgiGfifaaladslallyltyg.lasvgegivYgialstavkWfpdkrGLasgiiiggyGlGslilsplitsvie...............legveaafivmgivalllivllallikypek..........................qkvkksievsekdvtvaealrtaqfwvlyvsfllaavsgllligllkaygr...slildvgalvlavsissll.ngggRlvlGavsDkigrlktmsivlsisavlllslllikkisdvlflAlvalvaftiGgtfslfpslvskifgkknsaanyGllytakavagilggliaslvlteiGfeatllvtaalallslal 377
                 l+g+v++ l+ g+ Ytw++l+ ++  +l+          ++  ++ +  +l+ +  +++ g +l++  Gpr+ allg+ ++g G+++aa a+ l    l+++ + ++g+gi+Y   + t  +Wfp k+G+++g ii g G+ ++ ++ l t++i+                 + +     +g++ + l v++all ++p+                               k ++ s  + +v+  +   qf + +++ l  avsgl +ig +k +g    +l +d+ +l+l++s+ s+l n++gR+ +Ga +D +g      i  +i av+++ +   ++  + +f  + +++ f++Gg f++fp    +++g   +   y +l+ta++ a++lg  +a+++l   Gfe  +   +al+++sl+l
  MMETSP1137-20121227|4782_1  63 LLGGVMIHLACGSMYTWGNLLSYMPPHLKYWsgdasgkgLPDAQLVLPFILVSQMTGMPLGPMLEKFMGPRLTALLGALMMGCGVTLAASAKTLKHFVLLWSvMFGLGVGIAYQQPFITGARWFPKKKGMVTGAIISGLGVSAFLFNILSTKLINpknleavndafppeiYASWPSLLRTLGLIYGTLAVVGALLQSNPNShdakyplldyfsrsraphtsaargtsPSTPKASVTSAAQPSVTSLVFSRQFAIYWLMILNSAVSGLNIIGSYKTFGAkqpHLNSDA-FLSLVGSLASILgNAAGRFAWGAFADIFGFKTPFMILTVIQAVTMMFFKQLAATRA-TFTMATVVMLFCMGGNFAMFPAQAMRVYGASGA-SVYSFLFTAFGAASLLGPRLATVLLKRGGFELVFRSLGALSFVSLVL 485
                 789***********************9996669999999999999*********************************************************9*****************************************************************99889999************************9**********************9998788889999999************************************996333688999.**********9879*********************************999998888.8888888999*******************8765.57******************************************987 PP

>> TIGR00892  2A0113: monocarboxylate transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8  11.7   1.6e-05     0.032      69     168 ..     118     217 ..     108     490 .] 0.61

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 1.6e-05
   TIGR00892  69 agGPlssilvnkfGsrpvvliGgllaslGlilasfsssvlelyltiGvitGlGlalnlqpaltilGkyferrrplanglaaaGspvflsslaplnqllle 168
                 +g Pl  +l +  G r + l+G+l+ ++G+ la+ ++++ ++ l   v+ GlG+ + +q  ++    +f +++ +  g    G  v   ++  l+  l++
  MMETSP1137-20121227|4782_1 118 TGMPLGPMLEKFMGPRLTALLGALMMGCGVTLAASAKTLKHFVLLWSVMFGLGVGIAYQQPFITGARWFPKKKGMVTGAIISGLGVSAFLFNILSTKLIN 217
                 3458888888889***************************************************9***********998877766655555555554443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (490 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       179  (0.0436373); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.14s 00:00:00.55 Elapsed: 00:00:00.67
# Mc/sec: 965.29
//
Query:       MMETSP1137-20121227|4783_1  [L=654]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.5e-43  145.2   0.0    6.7e-43  144.7   0.0    1.1  1  TIGR01982 UbiB: 2-polyprenylphenol 6-hydroxylase


Domain annotation for each model (and alignments):
>> TIGR01982  UbiB: 2-polyprenylphenol 6-hydroxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  144.7   0.0   1.6e-46   6.7e-43      48     302 ..     242     496 ..     231     506 .. 0.93

  Alignments for each domain:
  == domain 1    score: 144.7 bits;  conditional E-value: 1.6e-46
   TIGR01982  48 lgerlrlaleelGPifiKlGQvls.tRaDllpeeiaeeLslLqdkvppfdlkaarkvieaelgkpveelFaefeekPlAaASiaQvhkAvlvegkeVavKvlRPgiekkieadikllellaklvekllpeakrlrptevvkefektlkeEldlrlEaanaselkenfkndkklivPevyweltservltlewidgipvsdleklkeaG.ldlkalaenlvesflkqvlrdgfFHaDlHpGNilvakd.gkiialDfGi 302
                   erl+ +l +l  +++KlGQ+ls   a +lp+e+ + + +++     +++ + +k++e+elg    +  a+f+e+P AaASi+Qvh+Avl++g++VavKv+ Pg+++ i+ d+  +++l +           l   +v++  ++ l eE d+ +Ea+n++++k  + + ++  vP+v+ +l servlt+ew+ g+ v++ ++  ++   ++ ++ ++l++  l++ +   f   D+   N l+++  g+++++DfG 
  MMETSP1137-20121227|4783_1 242 NIERLAGTLCRLRGAALKLGQMLSfNNAEVLPKEMQQLMDKVRHGADWMPAWQLKKTMEQELGPDWRQHVASFDETPFAAASIGQVHPAVLTDGRRVAVKVQYPGVATSIQSDLWSMKTLISYTG---VAPPGLYLDKVIEVAREELLEECDYVREASNTKKFKTLLSAYPEYAVPAVVPQLSSERVLTTEWMPGVAVDEAAAKSTMSaRERDRVGSRLLWLTLTELFTFRFMQTDPNWSNFLYDQRtGQLALIDFGA 496
                 569*********************44689***********************************999999*******************************************999988766555...445667899***************************************************************99887766489*********************************97669********5 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (654 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        94  (0.0229157); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.15s 00:00:00.55 Elapsed: 00:00:00.53
# Mc/sec: 1628.70
//
Query:       MMETSP1137-20121227|4784_1  [L=921]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (921 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       142  (0.0346173); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.54u 0.14s 00:00:00.68 Elapsed: 00:00:00.68
# Mc/sec: 1787.68
//
Query:       MMETSP1137-20121227|4785_1  [L=81]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (81 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       100  (0.0243784); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.43
# Mc/sec: 248.63
//
Query:       MMETSP1137-20121227|4787_1  [L=136]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (136 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        66  (0.0160897); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.15s 00:00:00.30 Elapsed: 00:00:00.31
# Mc/sec: 579.05
//
Query:       MMETSP1137-20121227|4788_1  [L=69]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (69 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        29  (0.00706972); expected 82.0 (0.02)
Passed bias filter:                       29  (0.00706972); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:00.25
# Mc/sec: 364.29
//
Query:       MMETSP1137-20121227|4789_1  [L=309]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (309 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        97  (0.023647); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.15s 00:00:00.39 Elapsed: 00:00:00.66
# Mc/sec: 617.95
//
Query:       MMETSP1137-20121227|4790_1  [L=196]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.023   11.1   0.1      0.026   10.9   0.0    1.0  1  TIGR02538 type_IV_pilB: type IV-A pilus assembly ATPase PilB


Domain annotation for each model (and alignments):
>> TIGR02538  type_IV_pilB: type IV-A pilus assembly ATPase PilB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   6.4e-06     0.026      50     172 ..      31     150 ..       7     165 .. 0.68

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 6.4e-06
   TIGR02538  50 lskefgvplldleeldlealvvklvkeelik.khkvlPllkrgnkllvavsdPtniaaledikfatklevevvvveedkleaaiekylaeseseakeleeedlgeeeeedlsaisdeeedeeee 172
                  s+ ++   +d ++  l+++ + +v++ l + k+ ++Pl+  +++l  a + Ptn   l +  f+  l +ev v +e+++    e++ ++ + +++++++    ++ ++d  a s++++d++++
  MMETSP1137-20121227|4790_1  31 WSTIYEGKKVDYATWLLDQVSKVTVSDVLHSlKKYIVPLFDPSANL--AATCPTNKVELAKQGFEEMLGIEVRVMTEEQICCHPEQLAKDGHVATTATDDA--TDDATTDAGASSANDADADKQ 150
                 556666666666666666666666655554336789****999987..5667****************************999998776666555555544..344444444444444443332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (196 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       142  (0.0346173); expected 82.0 (0.02)
Passed bias filter:                      107  (0.0260848); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.22u 0.16s 00:00:00.38 Elapsed: 00:00:00.42
# Mc/sec: 615.95
//
Query:       MMETSP1137-20121227|4791_1  [L=325]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (325 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       114  (0.0277913); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.11s 00:00:00.37 Elapsed: 00:00:00.38
# Mc/sec: 1128.85
//
Query:       MMETSP1137-20121227|4792_1  [L=348]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (348 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        77  (0.0187713); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.16s 00:00:00.41 Elapsed: 00:00:00.94
# Mc/sec: 488.64
//
Query:       MMETSP1137-20121227|4793_1  [L=216]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (216 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        66  (0.0160897); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.15s 00:00:00.34 Elapsed: 00:00:00.44
# Mc/sec: 647.95
//
Query:       MMETSP1137-20121227|4794_1  [L=324]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (324 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        75  (0.0182838); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.13s 00:00:00.39 Elapsed: 00:00:00.42
# Mc/sec: 1018.20
//
Query:       MMETSP1137-20121227|4795_1  [L=116]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0015   15.7   1.0     0.0026   14.9   0.7    1.3  1  TIGR00599 rad18: DNA repair protein rad18


Domain annotation for each model (and alignments):
>> TIGR00599  rad18: DNA repair protein rad18
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.7   6.4e-07    0.0026      43      69 ..      74     100 ..      71     109 .. 0.89

  Alignments for each domain:
  == domain 1    score: 14.9 bits;  conditional E-value: 6.4e-07
   TIGR00599  43 sCsHtFCslCiRrcLseepkCPlCrae 69 
                  C+H F   Ci r+L++ + CPlC  e
  MMETSP1137-20121227|4795_1  74 CCGHVFHLDCISRWLKTRSVCPLCNRE 100
                 6***********************865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (116 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        77  (0.0187713); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.14u 0.15s 00:00:00.29 Elapsed: 00:00:00.33
# Mc/sec: 463.96
//
Query:       MMETSP1137-20121227|4796_1  [L=164]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (164 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       114  (0.0277913); expected 82.0 (0.02)
Passed bias filter:                      103  (0.0251097); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.15s 00:00:00.32 Elapsed: 00:00:00.46
# Mc/sec: 470.57
//
Query:       MMETSP1137-20121227|4797_1  [L=493]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      8e-26   88.4   0.6    1.7e-24   84.1   0.4    2.1  1  TIGR03219 salicylate_mono: salicylate 1-monooxygenase
    1.8e-17   61.1   0.1    6.7e-09   32.9   0.0    2.2  2  TIGR01988 Ubi-OHases: ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family
    2.4e-14   51.5   0.1    3.2e-12   44.6   0.0    2.3  2  TIGR02032 GG-red-SF: geranylgeranyl reductase family
      4e-13   46.7   1.2    4.7e-06   23.5   0.1    2.8  2  TIGR01984 UbiH: 2-polyprenyl-6-methoxyphenol 4-hydroxylase
      6e-11   39.7   0.4    0.00013   18.8   0.0    2.8  2  TIGR01989 COQ6: ubiquinone biosynthesis monooxygenase COQ6
    1.7e-06   25.2   0.9      0.012   12.5   0.1    2.2  2  TIGR02352 thiamin_ThiO: glycine oxidase ThiO
    3.1e-05   20.9   1.1      0.054   10.3   0.4    2.9  2  TIGR02023 BchP-ChlP: geranylgeranyl reductase
    0.00034   17.2   0.3    0.00063   16.4   0.2    1.4  1  TIGR02734 crtI_fam: phytoene desaturase
    0.00036   17.8   0.2    0.00059   17.1   0.1    1.3  1  TIGR03467 HpnE: squalene-associated FAD-dependent desaturase
    0.00096   16.3   0.1     0.0023   15.0   0.0    1.5  2  TIGR00292 TIGR00292: thiazole biosynthesis enzyme
      0.001   15.8   0.2     0.0015   15.2   0.1    1.2  1  TIGR02485 CobZ_N-term: precorrin 3B synthase CobZ
     0.0012   15.4   0.2     0.0018   14.8   0.1    1.2  1  TIGR02733 desat_CrtD: C-3',4' desaturase CrtD
     0.0016   15.1   0.0       0.19    8.3   0.0    2.8  3  TIGR02360 pbenz_hydroxyl: 4-hydroxybenzoate 3-monooxygenase
     0.0028   14.6   0.1      0.004   14.1   0.1    1.2  1  TIGR03364 HpnW_proposed: FAD dependent oxidoreductase TIGR03364
     0.0047   13.9   0.1     0.0071   13.3   0.1    1.2  1  TIGR03197 MnmC_Cterm: tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain
      0.009   12.4   0.3      0.013   11.9   0.2    1.2  1  TIGR00562 proto_IX_ox: protoporphyrinogen oxidase
  ------ inclusion threshold ------
      0.012   10.9   0.0      0.016   10.4   0.0    1.1  1  TIGR03315 Se_ygfK: putative selenate reductase, YgfK subunit
      0.026   11.3   0.9      0.043   10.6   0.3    1.6  2  TIGR03378 glycerol3P_GlpB: glycerol-3-phosphate dehydrogenase, anaerobic, B subunit
      0.031   10.9   0.2       0.05   10.2   0.2    1.3  1  TIGR00275 TIGR00275: flavoprotein, HI0933 family
      0.035   10.4   0.0      0.047   10.0   0.0    1.1  1  TIGR01812 sdhA_frdA_Gneg: succinate dehydrogenase or fumarate reductase, flavoprotein subunit
      0.035   10.3   0.0      0.053    9.7   0.0    1.2  1  TIGR03997 mycofact_OYE_2: mycofactocin system FadH/OYE family oxidoreductase 2
      0.038   10.9   0.0      0.057   10.3   0.0    1.2  1  TIGR03267 methan_mark_2: putative methanogenesis marker protein 2


Domain annotation for each model (and alignments):
>> TIGR03219  salicylate_mono: salicylate 1-monooxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.1   0.4   9.2e-27   1.7e-24       2     372 ..      36     389 ..      35     406 .. 0.79

  Alignments for each domain:
  == domain 1    score: 84.1 bits;  conditional E-value: 9.2e-27
   TIGR03219   2 rvaiiGGGiaGvalalelsksshlnvklfeaapafgevGaGvsfGanavraieglGlaeaykk.......vadrtsapwqdiwfewrrgsdasylgatiapgvGqssvhradfldallkklpegiakfgkkaksieeqaeevevsfedGteyradlligadGiksalrdyvlegagqaaveprfsGtsayrGlvdsaelreayraagldehlvdvp.qmylgldghiltfpvrkGklinvvafvs.drsqakptwpsdapwvreaskremldafagwgdaarvllelieaptl..walhdlaelpgyvhGrvaliGdaahamlphqGaGaGqGledayllarlledtkleaedlpellevyddvrrerackvqrtsveaGel 372
                  v i GGGi G+  al l ++    v++fe + ++   G  +   +na+++++++ l   y+k       + drt+   +    ew  + d  y  a   ++     + r  + + ll+++ +   + g++++s+e+++++v  +++d te +ad+l+gadGi s +r+ vl++   +   p +sG + +              a+ + ++++ v  ++ylg  ++ ++  v  G+ i+  af    ++  ++    +  w ++        +f+gw++ ++ l+++ +   +    l+d a+   + +Grv l+Gdaah m+p  G G G  +eda++l + l    ++a+ +p  l  y++ r  ra+ vq  s+ +  +
  MMETSP1137-20121227|4797_1  36 DVIIXGGGIGGLCAALVLLNEG-CGVRVFEKTTEYRSFGGPIQIASNALESLKRIDLE-VYQKilaastvIGDRTNGLKDGXSNEWFATFD-LYSPARSRNQDASVVIDRPVLQQILLDRVGR-CVENGREVVSSENRGQKVVTTLSDNTEVEADFLVGADGIWSKVRS-VLDT---ELKAPIWSGYTCFAA-----------IANCVPDDIATVGyKVYLGSRKYFVSVDVGGGR-IQWYAFLNiPPKSLQLERGXELEWLKT-------TQFDGWSEEVHQLIDSTPLDQIeqRDLYDRAPRLQWTRGRVCLLGDAAHPMMPNLGQGGGMAIEDALVLGQELRR-IADASAVPLALRRYEQNRVVRAAAVQGMSRLSSTI 389
                 57899***********999765.79*****************************9985.44441111111556666666667778877665.3444444444444455666555566677665.5678999*************************************8.5655...566788999887754...........4677888888885379*************8777.677787761456667778888888876.......479***********99887766225678888888889*********************************99976.568899999*****************999877654 PP

>> TIGR01988  Ubi-OHases: ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.9   0.0   3.6e-11   6.7e-09       1     173 [.      36     204 ..      36     223 .. 0.85
   2 !   25.9   0.1   4.6e-09   8.6e-07     276     347 ..     316     384 ..     308     402 .. 0.86

  Alignments for each domain:
  == domain 1    score: 32.9 bits;  conditional E-value: 3.6e-11
   TIGR01988   1 divIvGgGlvGlalAlaLassadlkvalveakaaek...aksp..afdnRvsAlsaasiellekigvwdklekkraqpiqkirvsdagskgalefdaaevgaeaLgyvvenkvlqqaLlealqekknkvtllapaeveeleresdaveltlsdgetleakLlvgADGanSkvrqaagi 173
                 d++I GgG+ Gl  Al L +++   v ++e++ + +      p   ++n   +l+    e+++ki + +++  +r++ +++    +  ++++l   a++   ++  +v++  vlqq Ll ++             ev++ e++ ++v  tlsd++++ea+ lvgADG  Skvr+ +  
  MMETSP1137-20121227|4797_1  36 DVIIXGGGIGGLCAALVLLNEG-CGVRVFEKTTEYRsfgG--PiqIASNALESLKRIDLEVYQKILAASTVIGDRTNGLKDGXSNEWFATFDLYSPARS-RNQDASVVIDRPVLQQILLDRVGRCV-----ENGREVVSSENRGQKVVTTLSDNTEVEADFLVGADGIWSKVRSVLDT 204
                 9******************888.********987776442..232567777788888888888988888888889999998888888877777666654.488899****************9995.....689999999*********************************98764 PP

  == domain 2    score: 25.9 bits;  conditional E-value: 4.6e-09
   TIGR01988 276 vaervaliGdAAhtvhPlAGQGlNlGlrDvaaLaevlaeavergedigslavLkrYererradnaallaatd 347
                  + rv l+GdAAh + P  GQG  + ++D+  L + l++ +  +   +   +L+rYe++r   +aa++++ +
  MMETSP1137-20121227|4797_1 316 TRGRVCLLGDAAHPMMPNLGQGGGMAIEDALVLGQELRRIADAS---AVPLALRRYEQNRVVRAAAVQGMSR 384
                 678**********************************9865554...66789********999998888765 PP

>> TIGR02032  GG-red-SF: geranylgeranyl reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.6   0.0   1.7e-14   3.2e-12       2     158 ..      36     205 ..      35     240 .. 0.73
   2 ?    4.5   0.0     0.028       5.2     255     288 ..     310     343 ..     278     350 .. 0.80

  Alignments for each domain:
  == domain 1    score: 44.6 bits;  conditional E-value: 1.7e-14
   TIGR02032   2 DvvvvGaGpaGssaAlrlakkGlrVlllekkelprekeCggalskraveelelpkelivnevrkariispngek.veieee.................eeealvidRkefDelLaekAqeagaelllettvlsveiedekvkvevredekkevtakivigAdGakskvakklglk 158
                 Dv++ G+G+ G  aAl l ++G  V ++ek+ + r+      +  +a+e l+  + ++ +++ +a ++++ ++  ++                     ++ ++vidR ++ + L++++ +    +  +++v+s e +++kv++++++  + ev+a++++gAdG  skv++ l+ +
  MMETSP1137-20121227|4797_1  36 DVIIXGGGIGGLCAALVLLNEGCGVRVFEKTTEYRSFGGPIQIASNALESLKRIDLEVYQKILAASTVIGDRTNgLKDGXSnewfatfdlysparsrnQDASVVIDRPVLQQILLDRVGRC---VENGREVVSSENRGQKVVTTLSD--NTEVEADFLVGADGIWSKVRSVLDTE 205
                 *******************************877776444445555555555555444455554444444444333322223444555666666666699****************99776...66899999988887888888876..699******************99855 PP

  == domain 2    score: 4.5 bits;  conditional E-value: 0.028
   TIGR02032 255 radektvtgnvllvGDAAglVkPltGeGIayamv 288
                  ++ + ++g+v l+GDAA    P  G G  +a++
  MMETSP1137-20121227|4797_1 310 APRLQWTRGRVCLLGDAAHPMMPNLGQGGGMAIE 343
                 5666778999*************99988666665 PP

>> TIGR01984  UbiH: 2-polyprenyl-6-methoxyphenol 4-hydroxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.5   0.1   2.5e-08   4.7e-06       1     170 [.      36     204 ..      36     223 .. 0.79
   2 !   20.3   0.0   2.3e-07   4.2e-05     274     341 ..     316     383 ..     298     402 .. 0.84

  Alignments for each domain:
  == domain 1    score: 23.5 bits;  conditional E-value: 2.5e-08
   TIGR01984   1 dviivGgglvGlslAlaLsrksklkialieaksaeaakssfdarslalsagskqileklg..iweklekeatpikdih..vsd...rgafgalelraeeva.lpaLGyVveladlkqallkrlaekkkiklyapaelkeierekdeaevkldneqkleakLlvaAdGanskvreslsi 170
                 dvii Ggg+ Gl  Al L +++   + ++e+++  ++   f   ++ ++  + + l++++  +++k+  ++t i d      d   ++ f + +l +   +  +    V++   l+q+ll+r+ ++  ++     e+ + e++ +++  +l +++++ea+ lv AdG  skvr+ l  
  MMETSP1137-20121227|4797_1  36 DVIIXGGGIGGLCAALVLLNEG-CGVRVFEKTTEYRS---F-GGPIQIASNALESLKRIDleVYQKILAASTVIGDRTngLKDgxsNEWFATFDLYSPARSrNQDASVVIDRPVLQQILLDRVGRC--VEN--GREVVSSENRGQKVVTTLSDNTEVEADFLVGADGIWSKVRSVLDT 204
                 8*********************.*******9988877...3.4578889999999999875578999999999976442233311145677778766554404556778888999******88888..444..467777788888888999**********************98765 PP

  == domain 2    score: 20.3 bits;  conditional E-value: 2.3e-07
   TIGR01984 274 vkervvlignaAqtlhPiAgQGfNlGlrDvltLaevledarkdlGeaallqeylkerkeDraatiglt 341
                  + rv l+g+aA+ + P  gQG  + + D+l L + l++  +      +l++y+++r +  aa+ g++
  MMETSP1137-20121227|4797_1 316 TRGRVCLLGDAAHPMMPNLGQGGGMAIEDALVLGQELRRIADASAVPLALRRYEQNRVVRAAAVQGMS 383
                 678***********************************996555556789******987666655554 PP

>> TIGR01989  COQ6: ubiquinone biosynthesis monooxygenase COQ6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.1   1.7e-06   0.00032       2     192 ..      36     205 ..      35     229 .. 0.76
   2 !   18.8   0.0   7.1e-07   0.00013     331     400 ..     316     382 ..     312     409 .. 0.80

  Alignments for each domain:
  == domain 1    score: 17.6 bits;  conditional E-value: 1.7e-06
   TIGR01989   2 DvvivGgGlvGlalAaalkknpslkdkkvllldavdapklksrkyekksevysnRvssitpasielfkkigawdhiekdRikkfkklqvwdscskalieferkdvkeelafiiEndvilasllerlkeeksdnvkvknkaklksvtlpkkspndnsnlvkikledgetlktklliGADGanSkvRkaanik 192
                 Dv+i GgG+ Gl  A  l ++       v + +   + + +s  +  + +  sn + s+     e+++ki a  ++  dR++ +k     +  ++  +   ++  +++ +++i+  v+++ ll+r+    ++  +v                +++ + v  +l+d ++ ++++l+GADG  SkvR + + +
  MMETSP1137-20121227|4797_1  36 DVIIXGGGIGGLCAALVLLNEG----CGVRVFEK--TTEYRS--FGGPIQIASNALESLKRIDLEVYQKILAASTVIGDRTNGLKDGXSNEWFATFDLYSPARSRNQDASVVIDRPVLQQILLDRVGRCVENGREVVS-------------SENRGQKVVTTLSDNTEVEADFLVGADGIWSKVRSVLDTE 205
                 8899999988888777776654....46777787..777766..8888888999999999999999999999999999999998888888888888887777778888888999999999998888776633332222.............24566777789***********************986544 PP

  == domain 2    score: 18.8 bits;  conditional E-value: 7.1e-07
   TIGR01989 331 vtervALvGDAAHrvHPLAGqGvNlGfsDvesLvkalaeavkeGadlGsvssLkkyererkakNvallal 400
                  + rv L+GDAAH + P  GqG  + ++D+ +L + l + + + a     + L++ye++r  +  a+ ++
  MMETSP1137-20121227|4797_1 316 TRGRVCLLGDAAHPMMPNLGQGGGMAIEDALVLGQELRRIADASA---VPLALRRYEQNRVVRAAAVQGM 382
                 5679*************************9999988877655443...3467888888887776666555 PP

>> TIGR02352  thiamin_ThiO: glycine oxidase ThiO
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.5   0.1   6.6e-05     0.012       1      31 [.      37      67 ..      37      72 .. 0.92
   2 !   11.1   0.0   0.00018     0.033     152     209 ..     144     198 ..     132     211 .. 0.83

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 6.6e-05
   TIGR02352  1 vlviGgGviGlsvAveLakrghkvtllekde 31
                v++ GgG+ Gl  A+ L+++g  v+++ek +
  MMETSP1137-20121227|4797_1 37 VIIXGGGIGGLCAALVLLNEGCGVRVFEKTT 67
                799*************************984 PP

  == domain 2    score: 11.1 bits;  conditional E-value: 0.00018
   TIGR02352 152 ellkaLvkaleklGveiieevevqeieargekvtavktssekvqadqvvlaaGawake 209
                  l + L+++   +G  +++  ev + e+rg+kv+ +  ++ +v+ad +v a G+w+k 
  MMETSP1137-20121227|4797_1 144 VLQQILLDR---VGRCVENGREVVSSENRGQKVVTTLSDNTEVEADFLVGADGIWSKV 198
                 555555554...5888999999*********************************985 PP

>> TIGR02023  BchP-ChlP: geranylgeranyl reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.3   0.4   0.00029     0.054       2     164 ..      36     205 ..      35     214 .. 0.65
   2 !    6.7   0.0    0.0035      0.65     256     290 ..     310     344 ..     300     375 .. 0.77

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 0.00029
   TIGR02023   2 dvlviGggpsGaaaaetLakagievillerelarikPCGGaiPla..lieefdlPedlidrrvrkakvisPsaveikvdlpveeeyvgmvrrevfDeyLreraqkaGaelie..gllkklerded.......kltleyrek..ekeag.eekksveadvviGaDGakskvakelglg 164
                 dv++ Ggg +G  aa  L ++g  v ++e+  ++ +  GG i  a  ++e  +  +  + +++  a+ +   + +  +d    +e+ +     +fD y   r++++ a ++     l+++  d+        + +++ +++  +  ++  +++ vead  +GaDG  skv + l++ 
  MMETSP1137-20121227|4797_1  36 DVIIXGGGIGGLCAALVLLNEGCGVRVFEKT-TEYRSFGGPIQIAsnALESLKRIDLEVYQKILAASTVIGDRTNGLKDGX-SNEWFA-----TFDLYSPARSRNQDASVVIdrPVLQQILLDRVgrcvengREVVSSENRgqKVVTTlSDNTEVEADFLVGADGIWSKVRSVLDTE 205
                 899***************************9.9999****87654226777765555566666665555555444444444.355554.....688887666666666665411456666555543233344333333333423333314567799999999999999998888765 PP

  == domain 2    score: 6.7 bits;  conditional E-value: 0.0035
   TIGR02023 256 kPrkrldservvLvGDaaGlvakasGeGiyyamks 290
                  Pr +++++rv L GDaa  + +  G G   a++ 
  MMETSP1137-20121227|4797_1 310 APRLQWTRGRVCLLGDAAHPMMPNLGQGGGMAIED 344
                 69****************99999999986666655 PP

>> TIGR02734  crtI_fam: phytoene desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.2   3.4e-06   0.00063       2      32 ..      38      68 ..      37      78 .. 0.89

  Alignments for each domain:
  == domain 1    score: 16.4 bits;  conditional E-value: 3.4e-06
   TIGR02734  2 vViGaGlgGLAlAirLaaaGievtvlekrdk 32
                ++ G+G+gGL +A+ L ++G+ v+v+ek ++
  MMETSP1137-20121227|4797_1 38 IIXGGGIGGLCAALVLLNEGCGVRVFEKTTE 68
                678************************9875 PP

>> TIGR03467  HpnE: squalene-associated FAD-dependent desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.1   3.2e-06   0.00059       1      31 [.      37      67 ..      37      90 .. 0.89

  Alignments for each domain:
  == domain 1    score: 17.1 bits;  conditional E-value: 3.2e-06
   TIGR03467  1 vvvvGgGlAGLaAAveLaraGvrvtllEarr 31
                v++ GgG+ GL AA+ L ++G+ v+++E   
  MMETSP1137-20121227|4797_1 37 VIIXGGGIGGLCAALVLLNEGCGVRVFEKTT 67
                7899************************865 PP

>> TIGR00292  TIGR00292: thiazole biosynthesis enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   1.2e-05    0.0023      21      58 ..      34      74 ..      23      84 .. 0.85
   2 ?   -3.0   0.0         4   7.5e+02      62     109 ..     337     388 ..     334     391 .. 0.57

  Alignments for each domain:
  == domain 1    score: 15.0 bits;  conditional E-value: 1.2e-05
   TIGR00292 21 esDviivGaGpsGLtaayylakeglkvvvlerkl...aiGG 58
                + Dvii G+G  GL aa +l +eg  v v+e+     ++GG
  MMETSP1137-20121227|4797_1 34 KVDVIIXGGGIGGLCAALVLLNEGCGVRVFEKTTeyrSFGG 74
                68*****************************9753335666 PP

  == domain 2    score: -3.0 bits;  conditional E-value: 4
   TIGR00292  62 gGGmlf.skivvekeakelLdelgirye...degdgyvvadsvevisklask 109
                 gGGm   +++v+ +e + + d   +++     e++ +v a +v+ +s+l s 
  MMETSP1137-20121227|4797_1 337 GGGMAIeDALVLGQELRRIADASAVPLAlrrYEQNRVVRAAAVQGMSRLSST 388
                 5555551467777777777776665543111234455566677777777765 PP

>> TIGR02485  CobZ_N-term: precorrin 3B synthase CobZ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.1     8e-06    0.0015       2      35 ..      35      68 ..      34      86 .. 0.88

  Alignments for each domain:
  == domain 1    score: 15.2 bits;  conditional E-value: 8e-06
   TIGR02485  2 vdvlviGgGlaglCaaiearraGasvllleaaPr 35
                vdv++ GgG+ glCaa+   + G  v+++e +  
  MMETSP1137-20121227|4797_1 35 VDVIIXGGGIGGLCAALVLLNEGCGVRVFEKTTE 68
                8***************************997654 PP

>> TIGR02733  desat_CrtD: C-3',4' desaturase CrtD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.1   9.9e-06    0.0018       3      34 ..      36      67 ..      34      76 .. 0.90

  Alignments for each domain:
  == domain 1    score: 14.8 bits;  conditional E-value: 9.9e-06
   TIGR02733  3 svvviGaGiaGltaaallakrGlevtlleaaa 34
                +v++ G+Gi+Gl aa +l ++G  v+++e+ +
  MMETSP1137-20121227|4797_1 36 DVIIXGGGIGGLCAALVLLNEGCGVRVFEKTT 67
                79***************************976 PP

>> TIGR02360  pbenz_hydroxyl: 4-hydroxybenzoate 3-monooxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.0      0.39        73       2      36 ..      34      68 ..      33      86 .. 0.90
   2 ?    2.8   0.0     0.049       9.1     138     169 ..     173     202 ..     149     209 .. 0.69
   3 !    8.3   0.0     0.001      0.19     279     355 ..     318     395 ..     311     424 .. 0.79

  Alignments for each domain:
  == domain 1    score: -0.2 bits;  conditional E-value: 0.39
   TIGR02360  2 ktqvaiigaGpsGlllgqllhkaGidavilerksr 36
                k++v i g+G  Gl  + +l ++G  + ++e+ ++
  MMETSP1137-20121227|4797_1 34 KVDVIIXGGGIGGLCAALVLLNEGCGVRVFEKTTE 68
                78999********************9999999764 PP

  == domain 2    score: 2.8 bits;  conditional E-value: 0.049
   TIGR02360 138 kvtfekdgeekrldcdfiaGcdGfhGvsrksi 169
                  vt  +d  +++++ df++G+dG     r  +
  MMETSP1137-20121227|4797_1 173 VVTTLSD--NTEVEADFLVGADGIWSKVRSVL 202
                 3444444..45799*********998888655 PP

  == domain 3    score: 8.3 bits;  conditional E-value: 0.001
   TIGR02360 279 GrlflaGdaahivpptGakGlnlaasdvaylyealleaykekd.saglerysakalarvwkaerfswwltsllhrfpd 355
                 Gr+ l Gdaah + p   +G  +a+ d  +l + l++  +      +l ry ++ + r    + +s   +++l  +++
  MMETSP1137-20121227|4797_1 318 GRVCLLGDAAHPMMPNLGQGGGMAIEDALVLGQELRRIADASAvPLALRRYEQNRVVRAAAVQGMSRLSSTILFLYNH 395
                 99*********99999999****************9877654415678899988888888777777777766666655 PP

>> TIGR03364  HpnW_proposed: FAD dependent oxidoreductase TIGR03364
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.1   2.2e-05     0.004       2      34 ..      36      68 ..      35      94 .. 0.94

  Alignments for each domain:
  == domain 1    score: 14.1 bits;  conditional E-value: 2.2e-05
   TIGR03364  2 dvvvvGaGivGlahAlaaarrGlkVtvierssr 34
                dv++ G+Gi Gl  Al   + G  V+v+e++ +
  MMETSP1137-20121227|4797_1 36 DVIIXGGGIGGLCAALVLLNEGCGVRVFEKTTE 68
                9****************************9876 PP

>> TIGR03197  MnmC_Cterm: tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   0.1   3.8e-05    0.0071       1      33 [.      36      68 ..      36      72 .. 0.93

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 3.8e-05
   TIGR03197  1 kvavIGaGiAgaalalsLarrGvqvtllekdek 33
                +v++ G+Gi g+++al L + G  v ++ek ++
  MMETSP1137-20121227|4797_1 36 DVIIXGGGIGGLCAALVLLNEGCGVRVFEKTTE 68
                599**************************9865 PP

>> TIGR00562  proto_IX_ox: protoporphyrinogen oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.9   0.2     7e-05     0.013       2      37 ..      34      67 ..      33      82 .. 0.76

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 7e-05
   TIGR00562  2 kkkvvvvGgGisGLciayalekerpdvelvlvEakd 37
                k +v++ GgGi GLc+a +l  e  +  + ++E+  
  MMETSP1137-20121227|4797_1 34 KVDVIIXGGGIGGLCAALVLLNE--GCGVRVFEKTT 67
                5689****************999..77777888754 PP

>> TIGR03315  Se_ygfK: putative selenate reductase, YgfK subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   8.4e-05     0.016     531     571 ..      26      68 ..      14      93 .. 0.77

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 8.4e-05
   TIGR03315 531 pqlksekhkvavi..GaGPaGlsagyflaraGlpvtvfekkek 571
                  ++++ ++kv vi  G+G  Gl+a+++l  +G +v vfek  +
  MMETSP1137-20121227|4797_1  26 XDQSNPRNKVDVIixGGGIGGLCAALVLLNEGCGVRVFEKTTE 68 
                 3444444444444339***********************9865 PP

>> TIGR03378  glycerol3P_GlpB: glycerol-3-phosphate dehydrogenase, anaerobic, B subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.3   0.00023     0.043       2      28 ..      36      62 ..      35      77 .. 0.89
   2 ?   -2.9   0.0         3   5.7e+02     280     319 ..     157     193 ..     150     200 .. 0.69

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 0.00023
   TIGR03378  2 DviiiGgGlaGlscalrlaeaGkktai 28
                Dvii GgG+ Gl++al l+++G  + +
  MMETSP1137-20121227|4797_1 36 DVIIXGGGIGGLCAALVLLNEGCGVRV 62
                9*******************9976655 PP

  == domain 2    score: -2.9 bits;  conditional E-value: 3
   TIGR03378 280 llkgdevlraeleenrvariftrnhedipleakqfvlasG 319
                 + +g ev+++e ++++v    t   +++++ea+ +v a G
  MMETSP1137-20121227|4797_1 157 VENGREVVSSENRGQKV---VTTLSDNTEVEADFLVGADG 193
                 55667777776666655...47777778888888887776 PP

>> TIGR00275  TIGR00275: flavoprotein, HI0933 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.2   0.00027      0.05       1      32 [.      37      68 ..      37      71 .. 0.94

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 0.00027
   TIGR00275  1 viiiGgGaaGlmaAitaaeegakVlllEknkk 32
                vii GgG  Gl aA+ + +eg  V ++Ek+++
  MMETSP1137-20121227|4797_1 37 VIIXGGGIGGLCAALVLLNEGCGVRVFEKTTE 68
                799**************************976 PP

>> TIGR01812  sdhA_frdA_Gneg: succinate dehydrogenase or fumarate reductase, flavoprotein subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.0   0.00025     0.047       1      47 [.      36      82 ..      36     106 .. 0.84

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 0.00025
   TIGR01812  1 DvvivGaGlAGlraAveaakkglkvaviskvyptRsHsvaAqGGiaa 47
                Dv+i G+G+ Gl aA+ + ++g+ v v  k+   Rs  +  q  ++a
  MMETSP1137-20121227|4797_1 36 DVIIXGGGIGGLCAALVLLNEGCGVRVFEKTTEYRSFGGPIQIASNA 82
                9***********************************98776655554 PP

>> TIGR03997  mycofact_OYE_2: mycofactocin system FadH/OYE family oxidoreductase 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.0   0.00028     0.053     374     424 ..      29      82 ..      17     102 .. 0.84

  Alignments for each domain:
  == domain 1    score: 9.7 bits;  conditional E-value: 0.00028
   TIGR03997 374 kkarrrkkvlvvGgGPaGleaaataarrGhrvtllereee...lGGqvklaakl 424
                 +++r++  v++ GgG +Gl aa    + G  v ++e+ +e    GG +++a+++
  MMETSP1137-20121227|4797_1  29 SNPRNKVDVIIXGGGIGGLCAALVLLNEGCGVRVFEKTTEyrsFGGPIQIASNA 82 
                 56788889****************************987522279999998865 PP

>> TIGR03267  methan_mark_2: putative methanogenesis marker protein 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   0.00031     0.057      58      95 ..     187     234 ..     155     239 .. 0.72

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 0.00031
   TIGR03267  58 lllaadGiwGkl...ldad...pwwaGyc..avlvnv..ndiaamGGk 95 
                 +l+ adGiw k+   ld++   p w+Gy+  a + n+  +dia++G k
  MMETSP1137-20121227|4797_1 187 FLVGADGIWSKVrsvLDTElkaPIWSGYTcfAAIANCvpDDIATVGYK 234
                 799*******954447854444******73456788756689988876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (493 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       144  (0.0351048); expected 82.0 (0.02)
Passed bias filter:                      143  (0.034861); expected 82.0 (0.02)
Passed Vit filter:                        52  (0.0126767); expected 4.1 (0.001)
Passed Fwd filter:                        22  (0.00536324); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              22  [number of targets reported over threshold]
# CPU time: 0.59u 0.16s 00:00:00.75 Elapsed: 00:00:01.31
# Mc/sec: 496.72
//
Query:       MMETSP1137-20121227|4798_1  [L=501]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.7e-58  193.4   0.0    1.3e-57  193.1   0.0    1.1  1  TIGR00127 nadp_idh_euk: isocitrate dehydrogenase, NADP-dependent
     0.0033   14.3   0.1     0.0056   13.5   0.0    1.3  1  TIGR00169 leuB: 3-isopropylmalate dehydrogenase


Domain annotation for each model (and alignments):
>> TIGR00127  nadp_idh_euk: isocitrate dehydrogenase, NADP-dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  193.1   0.0   6.1e-61   1.3e-57       2     406 ..      36     438 ..      35     441 .. 0.91

  Alignments for each domain:
  == domain 1    score: 193.1 bits;  conditional E-value: 6.1e-61
   TIGR00127   2 kikvanpvveldgdemtriiwelikdklilpyleld.lkyydlsvesrdatndkvtkdaaeaikkynvavkcatitpdearvkefklkkmwkspngtirnilgg.tvfrepiiikriprlvprwekpiiigrhafgdqykatdvvvpgpgklklvykpkdgaekvdlkvydyeeeggvalamyntdesiedfakaslklalekklplylstkntilkkydg...rfkdifqevyekqyksk..fealgiwyehrliddmvaqalk.skggyilalknydgdvqsdivaqgfgslglmtsvlv..tpdgktv.eaeaahgtvtrhyrkyqkgeetstnsiasifawsrgllkrakldnt.aelvkfaeilesatietveegimtkdlalilkksklersayltteefldaveerlkkk 406
                 kik a p+v + g+emtr   +li ++ i p+ +    +++dls +srd+t+dkv  da  a  + +   k  t+tp +++ + + lkk w spng++r+  +g t+ r++i i+    +  ++++p++  rha g +y a    v g gk+   + pkdg++ + +   +  ++    ++  n  + + d+a+  +   le k++ y+ tk+t++k  +g    +k +f+e ye+q+k     +  g    h + d    q+++ ++gg+ +a +nydgd+ +d vaq + s g++ts l+  + dg+ + e ea+hgtv+  +  + +geets n++  + a    + + a+l n+ +e++ f+ ++ +++   + +g+ t+dl  +   s       ltte+f+dav+++l  +
  MMETSP1137-20121227|4798_1  36 KIK-APPMVFIRGEEMTRYCMDLIMQRWIEPHFDTSaWEFFDLSCKSRDDTEDKVLYDAVAAGARIGAIFKEPTVTPTQEQKELLGLKKTWGSPNGAMRKGWNGiTISRDTIHIEG---MELGYKRPVLFERHAVGGEYGAGFKTV-GSGKVLTLFLPKDGGNATIVDQRELADDNNAVVTYXNPLDNVPDLAHHFFSRCLEAKVTPYVVTKKTVFKWQEGfwqAMKTVFDEHYEAQFKAAglLDRCGGKLPHLISDAATMQIIRwTDGGFGMAAHNYDGDMLTDEVAQVHRSPGFITSNLIgkAADGRMIkEYEASHGTVADMWHAHLRGEETSLNPLGMVEALIGAMNHSADLANAgPEVSAFTAKIRASMHALMVSGKGTRDLCGA---S------GLTTEQFIDAVAAELSGE 438
                 555.468**************************9862689************************************************************9999678899987665...5679****************9987665.89*************************99888889999********************************999944346889999999999975337888889999888888999998579*********************************95558**998578*****************************************996489*********999999999******9643...3......589*********999876 PP

>> TIGR00169  leuB: 3-isopropylmalate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   0.0   2.8e-06    0.0056     213     315 ..     280     392 ..     277     433 .. 0.71

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 2.8e-06
   TIGR00169 213 elehlyiDnaamqLvksPeqldvvvtsnlfGDilsDeasvitGslGlLPsaslss....kglalfepvhgsapdia......gkgianpiaailsaalllryslnleeaaeai 315
                 +l hl+ D+a+mq+++  +    + ++n  GD+l De + +  s G++ s  +++    ++ + +e+ hg+  d+       ++   np++++ ++   +++s +l +a   +
  MMETSP1137-20121227|4798_1 280 KLPHLISDAATMQIIRWTDGGFGMAAHNYDGDMLTDEVAQVHRSPGFITSNLIGKaadgRMIKEYEASHGTVADMWhahlrgEETSLNPLGMVEALIGAMNHSADLANAGPEV 392
                 688999**********9887777899*************************99998877778889999999888641111112233456666555555555555555554444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (501 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        96  (0.0234032); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.35u 0.13s 00:00:00.48 Elapsed: 00:00:00.67
# Mc/sec: 986.96
//
Query:       MMETSP1137-20121227|4799_1  [L=404]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (404 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        89  (0.0216967); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.14s 00:00:00.43 Elapsed: 00:00:00.52
# Mc/sec: 1025.45
//
Query:       MMETSP1137-20121227|4801_1  [L=444]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (444 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        62  (0.0151146); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.13s 00:00:00.43 Elapsed: 00:00:00.42
# Mc/sec: 1395.31
//
Query:       MMETSP1137-20121227|4802_1  [L=330]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (330 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       118  (0.0287665); expected 82.0 (0.02)
Passed bias filter:                       99  (0.0241346); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.14s 00:00:00.40 Elapsed: 00:00:00.51
# Mc/sec: 854.05
//
Query:       MMETSP1137-20121227|4803_1  [L=446]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   4.6e-112  373.7   7.7    4.6e-80  267.9   0.5    2.0  2  TIGR03346 chaperone_ClpB: ATP-dependent chaperone protein ClpB
    1.2e-71  239.7   0.1    1.7e-46  156.6   0.0    2.1  2  TIGR02639 ClpA: ATP-dependent Clp protease ATP-binding subunit ClpA
    9.4e-66  220.5   7.0    3.5e-43  145.8   0.7    2.3  2  TIGR03345 VI_ClpV1: type VI secretion ATPase, ClpV1 family
    0.00011   18.7   0.1      0.026   10.9   0.0    2.2  2  TIGR03922 T7SS_EccA: type VII secretion AAA-ATPase EccA
    0.00042   16.8   0.1     0.0011   15.4   0.0    1.6  2  TIGR00764 lon_rel: putative ATP-dependent protease
    0.00046   17.0   0.1     0.0024   14.6   0.1    1.9  1  TIGR02928 TIGR02928: orc1/cdc6 family replication initiation protein
    0.00063   16.0   0.4     0.0083   12.3   0.0    2.3  3  TIGR01243 CDC48: AAA family ATPase, CDC48 subfamily
     0.0018   15.2   0.0       0.31    7.8   0.0    2.5  2  TIGR00635 ruvB: Holliday junction DNA helicase RuvB
     0.0021   14.5   0.0     0.0035   13.8   0.0    1.3  1  TIGR02902 spore_lonB: ATP-dependent protease LonB
  ------ inclusion threshold ------
      0.012   12.2   0.0      0.019   11.7   0.0    1.3  1  TIGR02915 PEP_resp_reg: PEP-CTERM-box response regulator transcription factor


Domain annotation for each model (and alignments):
>> TIGR03346  chaperone_ClpB: ATP-dependent chaperone protein ClpB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  267.9   0.5   1.1e-82   4.6e-80       7     247 ..     132     373 ..     126     379 .. 0.96
   2 !  109.9   0.9   6.3e-35   2.6e-32     235     295 ..     385     445 ..     375     446 .] 0.95

  Alignments for each domain:
  == domain 1    score: 267.9 bits;  conditional E-value: 1.1e-82
   TIGR03346   7 ealaeaqslalekdhqeiepehllkalleqeeglvaallekagvnvealkealekeleklpkvsgag.gevslskelerllekaeklaqklgdefvsvellllalleekeeakkllkeagvtkekleeaieevrggekvtdanaeekyealekyardlteraregkldPviGrdeeirrviqvlsrrtknnPvliGepGvGktaiveGlaqrivngdvPeslknkrllaldlgaliaGakyr 247
                 +a+++    +++ +++  e+ehl  + l +e+g++a++l+ ag++++alk++l+k  +++p +s +  ++vs+  ++ +ll+ a k+++k++d+++s e++l+a+l++k++ ++ lk++g+t+ kl+eaie vrgg+++t++++e+ yeale+y+rdlt++ar gkldPviGrd+e+rr++ vlsrrtknnP+l+GepGvGktai+eGlaqri +gdvPesl++++llald+gal+aGaky 
  MMETSP1137-20121227|4803_1 132 DAVQRLPATCRRLKQSVAESEHLALSCLADEDGIAAKVLTAAGTSAKALKAELDKFAQRQPTLSRTDtADVSMGGSMLALLRSAAKAKRKFKDKYLSPEHVLIAMLDDKRSGADALKAVGLTEPKLREAIETVRGGRTITTRTPEALYEALERYSRDLTAEARAGKLDPVIGRDDEVRRAMTVLSRRTKNNPILLGEPGVGKTAIAEGLAQRIASGDVPESLRKRKLLALDMGALVAGAKYX 373
                 566666777788889999*********************************************987659****************************************************************************************************************************************************************************5 PP

  == domain 2    score: 109.9 bits;  conditional E-value: 6.3e-35
   TIGR03346 235 ldlgaliaGakyrGefeerlkavlkevekseGeiilfidelhtlvGaGkaeGaldagnllk 295
                  d+gal+aGakyrGefeerlkavl+ev+ks Gei+lfide+ht+vGaGk+eG++dagnllk
  MMETSP1137-20121227|4803_1 385 XDMGALVAGAKYRGEFEERLKAVLEEVTKSAGEIVLFIDEIHTVVGAGKGEGSMDAGNLLK 445
                 6***********************************************************9 PP

>> TIGR02639  ClpA: ATP-dependent Clp protease ATP-binding subunit ClpA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  156.6   0.0   4.1e-49   1.7e-46      15     258 ..     140     372 ..     132     375 .. 0.88
   2 !   81.3   0.1   2.5e-26     1e-23     239     307 ..     377     445 ..     373     446 .] 0.91

  Alignments for each domain:
  == domain 1    score: 156.6 bits;  conditional E-value: 4.1e-49
   TIGR02639  15 eakkrrhefvtlehlllalledeeal..eileecgadvellkkklekyleeelekleeeeeaepeqtvglqrvlerallhvksaekkevdigdllvalleeeesyasyllkkqgisrldilelisheiskdekkeeeeeeekeeeekeekkekealekytvdltekakkgkidPliGredelertiqvLcrrkknnPllvGepGvGktaiveGLakriaedkvPealknakiysLdlgsllaGtky 258
                 ++++ ++     ehl l  l+de+ +  ++l++ g++ ++lk++l+k+ +++ ++l+ +++a++    ++  +l +a++  ++ + k+++ +++l+a+l++++s a  +lk  g++  ++ e i      +  + ++     +      ++  eale+y+ dlt++a+ gk+dP+iGr+de+ r + vL+rr+knnP+l+GepGvGktai+eGLa+ria+++vPe+l++ k+ +Ld+g+l+aG+ky
  MMETSP1137-20121227|4803_1 140 TCRRLKQSVAESEHLALSCLADEDGIaaKVLTAAGTSAKALKAELDKFAQRQ-PTLSRTDTADVSMGGSMLALLRSAAKAKRKFKDKYLSPEHVLIAMLDDKRSGA-DALKAVGLTEPKLREAIETVRGGRTITTRT-----P------EALYEALERYSRDLTAEARAGKLDPVIGRDDEVRRAMTVLSRRTKNNPILLGEPGVGKTAIAEGLAQRIASGDVPESLRKRKLLALDMGALVAGAKY 372
                 566667777889*****999999866559****************9987655.566666899999************************************99966.589******999999887655544222222.....2......345689******************************************************************************************9 PP

  == domain 2    score: 81.3 bits;  conditional E-value: 2.5e-26
   TIGR02639 239 lknakiysLdlgsllaGtkyrGdfeerlkevveeiekeeda.ilfiDeihtivgagatsggsldasnlLk 307
                 l++a  +  d+g+l+aG+kyrG+feerlk+v+ee++k+  + +lfiDeiht+vgag  ++gs+da nlLk
  MMETSP1137-20121227|4803_1 377 LEGAAAHPXDMGALVAGAKYRGEFEERLKAVLEEVTKSAGEiVLFIDEIHTVVGAGK-GEGSMDAGNLLK 445
                 677788889***************************99877589***********96.7889*******9 PP

>> TIGR03345  VI_ClpV1: type VI secretion ATPase, ClpV1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  145.8   0.7   8.7e-46   3.5e-43      11     258 ..     136     370 ..     127     374 .. 0.82
   2 !   77.9   0.4   2.8e-25   1.2e-22     241     309 ..     377     445 ..     373     446 .] 0.94

  Alignments for each domain:
  == domain 1    score: 145.8 bits;  conditional E-value: 8.7e-46
   TIGR03345  11 kaaalavarghsevelehlllklleeedsdlaeilkelkvdleelkaelaraleklkk...gnsrvpalskelvelleeawllaslelgeervrsgalllalleeaelrallssvskelekiev..eelkeklealveesaeaeeaekeasaaaeakaaakesaLdkytvdltaqAregkiDpvlgRdeeirqliDiLlRRrqnnPiltGeaGvGktAvveglAlriaagdvPealrevellsLDlgllqAGA 258
                 +  a++ + ++s  e ehl l+ l++ed+ +a++l++++ ++++lkael++  ++ ++    +++  ++  +++ ll++a + a+ +++++ ++  ++l+a+l++++      s +++l+++     +l+e++e++  + + ++            + +a  +aL++y+ dlta+Ar+gk+Dpv+gRd+e+r+ + +L RR +nnPil+Ge+GvGktA+ eglA+ria+gdvPe+lr+ +ll+LD+g+l AGA
  MMETSP1137-20121227|4803_1 136 RLPATCRRLKQSVAESEHLALSCLADEDGIAAKVLTAAGTSAKALKAELDKFAQRQPTlsrTDTADVSMGGSMLALLRSA-AKAKRKFKDKYLSPEHVLIAMLDDKR------SGADALKAVGLtePKLREAIETVRGGRTITT-----------RTPEALYEALERYSRDLTAEARAGKLDPVIGRDDEVRRAMTVLSRRTKNNPILLGEPGVGKTAIAEGLAQRIASGDVPESLRKRKLLALDMGALVAGA 370
                 55678999999999***********************************9988876651004444455556777777766.67999******************995......4555555554400455555555444433332...........24566789*****************************************************************************************9 PP

  == domain 2    score: 77.9 bits;  conditional E-value: 2.8e-25
   TIGR03345 241 lrevellsLDlgllqAGAsvkGeFekRlksvidevkasekpiilFiDeaHtliGaGgqaGqgDaanllk 309
                 l++ + +  D+g+l AGA  +GeFe+Rlk+v++ev++s+  i+lFiDe+Ht++GaG  +G+ Da nllk
  MMETSP1137-20121227|4803_1 377 LEGAAAHPXDMGALVAGAKYRGEFEERLKAVLEEVTKSAGEIVLFIDEIHTVVGAGKGEGSMDAGNLLK 445
                 566667788***********************************************************9 PP

>> TIGR03922  T7SS_EccA: type VII secretion AAA-ATPase EccA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.9   0.0   6.5e-05     0.026     301     337 ..     309     345 ..     305     358 .. 0.82
   2 !    5.5   0.0    0.0026       1.1     355     395 ..     396     436 ..     390     443 .. 0.68

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 6.5e-05
   TIGR03922 301 RaerGlavaqrskHlllaGPPGtGkttiArvvakiya 337
                 R+++ +    + +  +l+G PG Gkt+iA+ +a+ +a
  MMETSP1137-20121227|4803_1 309 RRAMTVLSRRTKNNPILLGEPGVGKTAIAEGLAQRIA 345
                 555555556677889****************998765 PP

  == domain 2    score: 5.5 bits;  conditional E-value: 0.0026
   TIGR03922 355 ligeyigeseaktnelidkaLggvlFlDEayaLvekrdgak 395
                 + ge++   +a  +e+  +a + vlF+DE++++v  ++g++
  MMETSP1137-20121227|4803_1 396 YRGEFEERLKAVLEEVTKSAGEIVLFIDEIHTVVGAGKGEG 436
                 334444444444556666788889**********9877665 PP

>> TIGR00764  lon_rel: putative ATP-dependent protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   2.8e-06    0.0011      17      61 ..     298     344 ..     285     354 .. 0.80
   2 ?   -1.9   0.0      0.48     2e+02     215     229 ..     414     428 ..     405     429 .. 0.79

  Alignments for each domain:
  == domain 1    score: 15.4 bits;  conditional E-value: 2.8e-06
   TIGR00764  17 idqviGqdeavevikkaa..kqkrnvlliGePGvGksmlakamaell 61 
                 +d viG+d+ v+   +    + k n +l+GePGvGk+ +a+ +a+ +
  MMETSP1137-20121227|4803_1 298 LDPVIGRDDEVRRAMTVLsrRTKNNPILLGEPGVGKTAIAEGLAQRI 344
                 799*******9987776511556789**************9998755 PP

  == domain 2    score: -1.9 bits;  conditional E-value: 0.48
   TIGR00764 215 rahkGvlyideiatl 229
                  a   vl+idei+t+
  MMETSP1137-20121227|4803_1 414 SAGEIVLFIDEIHTV 428
                 567779******996 PP

>> TIGR02928  TIGR02928: orc1/cdc6 family replication initiation protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.1   5.9e-06    0.0024      16      66 ..     300     346 ..     296     438 .. 0.64

  Alignments for each domain:
  == domain 1    score: 14.6 bits;  conditional E-value: 5.9e-06
   TIGR02928  16 rivhRdeqieelakalkpilrgsrpsnvliyGktGtGKtavtkkvlkelee 66 
                  + +Rd+++++ ++ l+     ++ +n ++ G++G+GKta+++ + +++++
  MMETSP1137-20121227|4803_1 300 PVIGRDDEVRRAMTVLSR----RTKNNPILLGEPGVGKTAIAEGLAQRIAS 346
                 567999999998887765....6667889***************9999865 PP

>> TIGR01243  CDC48: AAA family ATPase, CDC48 subfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0      0.91   3.8e+02     369     435 ..     183     250 ..     176     268 .. 0.63
   2 ?    1.1   0.0      0.05        20     216     236 ..     324     344 ..     306     349 .. 0.73
   3 !   12.3   0.0     2e-05    0.0083     250     284 ..     394     429 ..     381     438 .. 0.88

  Alignments for each domain:
  == domain 1    score: -3.1 bits;  conditional E-value: 0.91
   TIGR01243 369 dldklaevthgfvgadlaalakeaamaalrrllregkidleaeei.pkevleelkvtkkdfkealkmv 435
                 +ldk+a+       +d a ++   +m al r   ++k +++ + + p++vl  +   k+   +alk v
  MMETSP1137-20121227|4803_1 183 ELDKFAQRQPTLSRTDTADVSMGGSMLALLRSAAKAKRKFKDKYLsPEHVLIAMLDDKRSGADALKAV 250
                 56666666666666777777777777777777666666666665436666666666666666666655 PP

  == domain 2    score: 1.1 bits;  conditional E-value: 0.05
   TIGR01243 216 llygppgtgktllakavanea 236
                 +l+g pg gkt +a  +a+ +
  MMETSP1137-20121227|4803_1 324 ILLGEPGVGKTAIAEGLAQRI 344
                 466777777777777776655 PP

  == domain 3    score: 12.3 bits;  conditional E-value: 2e-05
   TIGR01243 250 skyygeseerlreifkeaeenapsii.fideidaia 284
                 +ky ge eerl+ +++e  + a  i+ fidei ++ 
  MMETSP1137-20121227|4803_1 394 AKYRGEFEERLKAVLEEVTKSAGEIVlFIDEIHTVV 429
                 69******************99987449****9874 PP

>> TIGR00635  ruvB: Holliday junction DNA helicase RuvB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.8   0.0   0.00076      0.31      32      54 ..     322     344 ..     298     355 .. 0.83
   2 !    4.5   0.0    0.0078       3.2      77      93 ..     412     428 ..     397     433 .. 0.70

  Alignments for each domain:
  == domain 1    score: 7.8 bits;  conditional E-value: 0.00076
   TIGR00635  32 hvllyGPPGlGkttlakiiakel 54 
                   +l G PG+Gkt++a+ +a+ +
  MMETSP1137-20121227|4803_1 322 NPILLGEPGVGKTAIAEGLAQRI 344
                 44788***********9999876 PP

  == domain 2    score: 4.5 bits;  conditional E-value: 0.0078
   TIGR00635  77 taleegdvlfiDeihrl 93 
                 t+   + vlfiDeih +
  MMETSP1137-20121227|4803_1 412 TKSAGEIVLFIDEIHTV 428
                 34444569*******87 PP

>> TIGR02902  spore_lonB: ATP-dependent protease LonB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.0   8.6e-06    0.0035      51     106 ..     285     340 ..     280     429 .. 0.71

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 8.6e-06
   TIGR02902  51 lteplseksrpksfdeiiGqeeGikalkaalcGpnpqhviiyGppGvGktaaarlv 106
                  ++ l+ ++r  ++d +iG+++ ++   + l     +  i+ G pGvGkta a   
  MMETSP1137-20121227|4803_1 285 YSRDLTAEARAGKLDPVIGRDDEVRRAMTVLSRRTKNNPILLGEPGVGKTAIAEGL 340
                 5788999********************************************98643 PP

>> TIGR02915  PEP_resp_reg: PEP-CTERM-box response regulator transcription factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   4.5e-05     0.019     120     203 ..     280     351 ..     229     383 .. 0.81

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 4.5e-05
   TIGR02915 120 aeleeenrrlkkasdstaleGlitsseemkkicrtiekvaasdvtvlllGesGtGkevlaralhelsdrkdkrfvaincaaiPe 203
                 + le+  r l++   + +l+ +i++++e+++ ++ + + ++ +   +llGe G Gk  +a +l +           i  + +Pe
  MMETSP1137-20121227|4803_1 280 EALERYSRDLTAEARAGKLDPVIGRDDEVRRAMTVLSRRTKNN--PILLGEPGVGKTAIAEGLAQR----------IASGDVPE 351
                 469999*****************************99976655..789*************99763..........34444555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (446 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       150  (0.0365675); expected 82.0 (0.02)
Passed bias filter:                      130  (0.0316919); expected 82.0 (0.02)
Passed Vit filter:                        36  (0.00877621); expected 4.1 (0.001)
Passed Fwd filter:                        10  (0.00243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.55u 0.15s 00:00:00.70 Elapsed: 00:00:00.70
# Mc/sec: 840.96
//
Query:       MMETSP1137-20121227|4805_1  [L=1021]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.2e-19   65.4  31.0    1.3e-13   48.3  10.1    2.1  2  TIGR00785 dass: transporter, divalent anion:Na+ symporter (DASS) family
    1.2e-10   38.9  21.1    1.2e-07   29.1   6.6    2.2  2  TIGR00935 2a45: arsenical pump membrane protein


Domain annotation for each model (and alignments):
>> TIGR00785  dass: transporter, divalent anion:Na+ symporter (DASS) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.9   5.9   3.2e-09   6.5e-06       9     211 ..     101     286 ..      94     308 .. 0.79
   2 !   48.3  10.1   6.4e-17   1.3e-13     257     434 ..     824     997 ..     799    1005 .. 0.88

  Alignments for each domain:
  == domain 1    score: 22.9 bits;  conditional E-value: 3.2e-09
   TIGR00785   9 gawlllaifvlaivllileplplavvaLlailiiavllgvlsavkvknalsgfadptifLvfgaFilakalektgLgkriAyklvkllgkttlelgyvlvflellLasawpsntaRaggillPiiksllallgskeekskrkigkylllgiavsasigsigfligsapNalaasllskilgieisfldWllaalPlgiillll 211
                 +a+l l ++++a  l++ +  p  v  Ll+ +   +l+++++    ++a +gf++++i  + + Fila+ale+t+ ++r+   +++  ++   + +++ +   ++ +s+ + nt    ++l+ + ++ +a  g ++        + ll+  ++++ +g++ +lig+  N++  s +++  ++ +  ++ ++ + P+g+  +l+
  MMETSP1137-20121227|4805_1 101 NAYLTLWVLLSALLLMANDCAPDLV--LLGTTTFLLLVEIIT---PAEAWAGFSSTSILAIGALFILARALEETQAAERLLRPFLGHPKT--NREAIARLCYPTAAMSMGMANTP-IVAMLISVCEGWAARSGLSP--------HVLLMPLSFASMLGGMCTLIGTSTNLVLNSQITSDPQAPLEPFE-MFTMTPVGLPTMLI 286
                 6777788888888888888888765..444688888999999...999******9999888888********************999998..88999999***************.99999999999988888888........8999*********************9877666644344333333.34445555544443 PP

  == domain 2    score: 48.3 bits;  conditional E-value: 6.4e-17
   TIGR00785 257 lalllwifgksegikasvvallavvlllllgivtwkdikknkvaWnvlvlfgglitlagvLkksGfikwlseklvkileglsptivvlllvvlfvlllyefaSntAltallvpifvsvasvlgvplellalalalsaslagillpvatppnaivYgsGyvkikdmwkvGlilgivsli 434
                   ++ ++     ++   + al    +++++g +t++++ ++ +++ vl+ +++  +l+++L+ ++++k+ls +l +      p +++l+ v+ f+ +l+ ++Sn+A++ ll +++   + v g  + +++lal ++as a + +p++  +n +v   G     d+  +G+il++v+ i
  MMETSP1137-20121227|4805_1 824 CLVVIFVLPAIGVQTLLTLALATSCVCVAIGCITVNQAWQS-INYRVLLTIAASYGLGAALQTTKVAKFLSIALTDLG-TVLPPVAFLFAVFFFTAMLSCVVSNAATVVLLYAVL-RDSDVDGLRKSQTMLALLIGASTA-FATPIGYQTNLMVLTPGGYRFGDFFSLGIILTVVVGI 997
                 3455566667888889999*********************9.******************************999977.55559**********************999998876.56889*******************.*******************************998755 PP

>> TIGR00935  2a45: arsenical pump membrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   2.5     8e-07    0.0016     214     387 ..      84     257 ..      48     293 .. 0.73
   2 !   29.1   6.6   5.8e-11   1.2e-07     224     415 ..     818     997 ..     777    1007 .. 0.76

  Alignments for each domain:
  == domain 1    score: 15.4 bits;  conditional E-value: 8e-07
   TIGR00935 214 kkkaikdkallkkclivLvlllvlffvlevleipvsalaaiaaliliilakkadiidtekvlkrveWqivlFslalylvveaLknlglieylge.ilnvledkrllaaillvgfvsAllsslvdniPtvlvvalsl..sqssavgllkealvyAlvlGadLGpkitliGslAtllwl 387
                 +++ + d+a l++cl+  + l    +++ +l +        ++l+  + + + +ii   +  ++   + +l   al+++  aL++ +  e l    l+ ++ +r   ai  + + +A++s  + n P v  +++s+       +gl  + l+  l + + LG+  tliG++ +l+  
  MMETSP1137-20121227|4805_1  84 PQACLTDTADLEVCLAGNAYLTLWVLLSALLLMANDCAPDLVLLGTTTFLLLVEIITPAEAWAGFSSTSILAIGALFILARALEETQAAERLLRpFLGHPKTNR--EAIARLCYPTAAMSMGMANTPIV-AMLISVceGWAARSGLSPHVLLMPLSFASMLGGMCTLIGTSTNLVLN 257
                 556666666666666555444433333333333333334455566666666666666666677777777888889************99977666999999888..57778899*************44.344444115567899****************************9864 PP

  == domain 2    score: 29.1 bits;  conditional E-value: 5.8e-11
   TIGR00935 224 lkkclivLvlllvlffvlevleipv...salaaiaaliliilakkadiidtekvlkrveWqivlFslalylvveaLknlglieylgeilnvledkrllaa.illvgfvsAllsslvdniPtvlvvalslsqssavgllkealvyAlvlGadLGpkitliGslAtllwlhvleqkgvkisfleyFrvGiiltipvll 415
                 + ++l+ Lv    + fvl  ++++    +ala+ ++ ++i        i +++  + +++ ++l  +a y +  aL+   + ++l+  l+ l      +a  + v f +A+ls +v n  tv+     l +s+  gl k   + Al +Ga      t+iG   +l+   vl+  g++  f+ +F +Giilt++v +
  MMETSP1137-20121227|4805_1 818 FCVSLACLV----VIFVLPAIGVQTlltLALATSCVCVAIG------CITVNQAWQSINYRVLLTIAASYGLGAALQTTKVAKFLSIALTDLGTVLPPVAfLFAVFFFTAMLSCVVSNAATVVLLYAVLRDSDVDGLRKSQTMLALLIGAST-AFATPIGYQTNLM---VLTPGGYR--FGDFFSLGIILTVVVGI 997
                 444444433....3344455555440004444444444443......345566778899***************************9777776655545515678899******************************************96.679********87...78889987..79**********98754 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1021 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       249  (0.0607021); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.65u 0.13s 00:00:00.78 Elapsed: 00:00:00.72
# Mc/sec: 1871.68
//
Query:       MMETSP1137-20121227|4806_1  [L=80]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (80 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       128  (0.0312043); expected 82.0 (0.02)
Passed bias filter:                      102  (0.0248659); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.15s 00:00:00.28 Elapsed: 00:00:00.35
# Mc/sec: 301.69
//
Query:       MMETSP1137-20121227|4807_1  [L=925]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.1e-86  288.0   0.1    7.4e-86  286.2   0.0    1.8  2  TIGR02352 thiamin_ThiO: glycine oxidase ThiO
    1.1e-24   85.1   0.0    1.3e-14   52.0   0.0    3.0  3  TIGR03197 MnmC_Cterm: tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain
    3.1e-13   47.4   0.0    3.2e-12   44.0   0.0    2.4  2  TIGR03364 HpnW_proposed: FAD dependent oxidoreductase TIGR03364
    1.9e-10   38.0   0.0    3.2e-10   37.2   0.0    1.3  1  TIGR01373 soxB: sarcosine oxidase, beta subunit family
    1.2e-08   31.8   0.0    2.8e-06   24.0   0.0    2.1  2  TIGR03377 glycerol3P_GlpA: glycerol-3-phosphate dehydrogenase, anaerobic, A subunit
    4.6e-06   24.0   0.3    2.9e-05   21.4   0.2    2.1  2  TIGR03467 HpnE: squalene-associated FAD-dependent desaturase
    3.7e-05   20.4   0.3    5.4e-05   19.9   0.2    1.2  1  TIGR02734 crtI_fam: phytoene desaturase
    0.00036   17.2   0.0    0.00058   16.5   0.0    1.3  1  TIGR00551 nadB: L-aspartate oxidase
    0.00063   16.5   0.3      0.001   15.8   0.2    1.3  1  TIGR01988 Ubi-OHases: ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family
    0.00068   17.2   0.1     0.0013   16.3   0.0    1.4  1  TIGR02032 GG-red-SF: geranylgeranyl reductase family
     0.0014   14.9   0.3     0.0021   14.3   0.2    1.1  1  TIGR03997 mycofact_OYE_2: mycofactocin system FadH/OYE family oxidoreductase 2
     0.0018   15.0   0.1        0.1    9.2   0.2    2.2  2  TIGR00275 TIGR00275: flavoprotein, HI0933 family
     0.0057   13.7   0.1       0.01   12.8   0.1    1.4  1  TIGR01790 carotene-cycl: lycopene cyclase family protein
     0.0099   12.5   0.2      0.014   12.0   0.2    1.2  1  TIGR01984 UbiH: 2-polyprenyl-6-methoxyphenol 4-hydroxylase
  ------ inclusion threshold ------
      0.011   12.1   0.1      0.015   11.6   0.1    1.2  1  TIGR01812 sdhA_frdA_Gneg: succinate dehydrogenase or fumarate reductase, flavoprotein subunit
      0.014   12.0   0.1        1.4    5.4   0.0    2.8  3  TIGR03329 Phn_aa_oxid: putative aminophosphonate oxidoreductase
      0.019   11.8   0.2      0.036   10.9   0.2    1.4  1  TIGR03378 glycerol3P_GlpB: glycerol-3-phosphate dehydrogenase, anaerobic, B subunit
      0.022   11.4   0.0       0.57    6.7   0.0    2.7  2  TIGR01377 soxA_mon: sarcosine oxidase, monomeric form
      0.022   10.0   0.1      0.032    9.4   0.0    1.1  1  TIGR03315 Se_ygfK: putative selenate reductase, YgfK subunit
      0.031   11.3   0.1      0.052   10.6   0.1    1.2  1  TIGR00292 TIGR00292: thiazole biosynthesis enzyme
      0.047   10.2   0.3       0.07    9.6   0.2    1.2  1  TIGR02733 desat_CrtD: C-3',4' desaturase CrtD
       0.05   10.2   0.0      0.081    9.5   0.0    1.2  1  TIGR03385 CoA_CoA_reduc: CoA-disulfide reductase
      0.054   10.0   0.1       0.08    9.5   0.1    1.2  1  TIGR01813 flavo_cyto_c: flavocytochrome c
      0.066    9.1   0.2        0.1    8.5   0.1    1.1  1  TIGR01816 sdhA_forward: succinate dehydrogenase, flavoprotein subunit
      0.097    9.0   0.0       0.14    8.5   0.0    1.1  1  TIGR00562 proto_IX_ox: protoporphyrinogen oxidase
       0.73    6.6   4.0       0.14    8.9   0.1    1.7  2  TIGR02023 BchP-ChlP: geranylgeranyl reductase


Domain annotation for each model (and alignments):
>> TIGR02352  thiamin_ThiO: glycine oxidase ThiO
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  286.2   0.0   4.7e-88   7.4e-86       2     349 ..      75     420 ..      74     421 .. 0.92
   2 ?   -1.6   0.0       1.5   2.4e+02      62     125 ..     509     571 ..     502     584 .. 0.82

  Alignments for each domain:
  == domain 1    score: 286.2 bits;  conditional E-value: 4.7e-88
   TIGR02352   2 lviGgGviGlsvAveLakrghkvtllekdevgsgAskaAaGmLapvaEveiaeeallrLaleSlrlypelleelkeltg.ldve.ykeeGilvvaadeddaeklreladlqsktgleleslskealrelePelseeirgavflpedaqvdprellkaLvkaleklGveiieevevqeiearge..kvtavktsse.kvqadqvvlaaGawakellplalrpvkgeilrlevpaekllnrpvravvyqrqvYivPredgrlvvGAtsees.gfdttvtlegvkeLledaievlPalkeaelletwaGlRPatpDnlPllgeheederlliatGhyRnGiLLaPataevvadliek 349
                 lv+GgGv GlsvA+eL  rg++vtll ++   + A+ aA+GmLap+aE    +++ll+L+l++++ +  +l+++++++g ++++ + + G ++ a+d d +++ +  +++  +t     +l ++++r+leP+ls++i g++++p +a vdpr l+ aL +a++ +Gv++ e +ev  ++a++    v av+ +++ +    q+vl+aG+w ++llp +  p+kg++l l  p  + ++  + ++v+ +++Y++Pr+dgr+vvGAt+e++ gf+t  t++gv++Ll++ai+ +P l  ++l e+waGlRP tpD +Pllg+  + +++ +a G+ RnGiLL+P+ a +vad +e+
  MMETSP1137-20121227|4807_1  75 LVVGGGVAGLSVALELRTRGWEVTLLSRQS-SESATLAAGGMLAPQAERL-SPGPLLDLCLRAREEFAPWLRSVEARAGgVNTGpVARGGFVSPAFDGDAVARWQPPMHAGPAT-----WLGGDEMRHLEPALSDDICGGWWYPSEASVDPRLLMPALTAACKAEGVNMVEGCEVVGLQAENGgvAVRAVRLADGtERPVSQLVLCAGSWLRKLLPVPCVPIKGQMLSLSPP-TEDHSPALMRTVFAERCYLIPRQDGRIVVGATEEPDeGFSTRSTAGGVHTLLSAAISTMPSLSTYTLDEVWAGLRPTTPDLMPLLGPSGSWRNVHVAGGYHRNGILLSPVCARLVADGVEG 420
                 8****************************5.99****************7.***********************9887526665367888999999999999999999999777.....********************************************************9887776511455666666657889*******************************9.777777888899*********************97538******************************************************************************99876 PP

  == domain 2    score: -1.6 bits;  conditional E-value: 1.5
   TIGR02352  62 leSlrlypelleelkeltgldveykeeGilvvaadeddaeklreladlqsktgleleslskeal 125
                 ++S+r  +++  +l++    + e++  G+   a  ++d +++++ a +qs++    + ++ +a 
  MMETSP1137-20121227|4807_1 509 SQSMRANRKFIDRLEAGDVAEAEFR-DGTXEEASRDADPAQSAQHAPAQSAQHAPTSQYTXSAS 571
                 5788888889999988888888995.9**********************999877777766554 PP

>> TIGR03197  MnmC_Cterm: tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.3   0.1   2.5e-09   3.9e-07       2      39 ..      74     112 ..      73     150 .. 0.83
   2 !   52.0   0.0     8e-17   1.3e-14     134     316 ..     205     387 ..     197     393 .. 0.83
   3 ?    2.2   0.0       0.1        16     345     392 ..     391     438 ..     388     440 .. 0.91

  Alignments for each domain:
  == domain 1    score: 27.3 bits;  conditional E-value: 2.5e-09
   TIGR03197   2 vavIGaGiAgaalalsLarrGvqvtllekde.klaqgAS 39 
                 ++v+G+G+Ag+++al+L  rG++vtll +++ + a+ A 
  MMETSP1137-20121227|4807_1  74 ALVVGGGVAGLSVALELRTRGWEVTLLSRQSsESATLAA 112
                 79*************************876414444444 PP

  == domain 2    score: 52.0 bits;  conditional E-value: 8e-17
   TIGR03197 134 kgglffpqggwlsPpelvkallakaki.elklhfnteitslerdaeg...WqllsengevlaasvvVlAngaqakqleqtaelplrkvrGQvshlpatek..lsk.lktvlcaegYltpakqgehclGAsyernde.dlelreadhaenlerlaellpalawaaevdisalqgrvgvRaasrDhLPlvGav 316
                 +gg+++p+ + ++P+ l+ al+a+ k+ +++++ + e++ l+ ++ g     +  ++g++   s++Vl++g  +++l +   +p  +++GQ+ +l+  ++  +++ ++tv+  + Yl+p ++g+ ++GA+ e+++  ++  ++   +  l++  +++p+l+       +  + ++g+R++++D +Pl+G+ 
  MMETSP1137-20121227|4807_1 205 CGGWWYPSEASVDPRLLMPALTAACKAeGVNMVEGCEVVGLQAENGGvavRAVRLADGTERPVSQLVLCAGSWLRKLLP---VPCVPIKGQMLSLSPPTEdhSPAlMRTVFAERCYLIPRQDGRIVVGATEEPDEGfSTRSTAGGVHTLLSAAISTMPSLSTY-----TLDEVWAGLRPTTPDLMPLLGPS 387
                 79**********************9999***************9999553344559999999***********999998...6********988865444344442689999999***************999988444444445566677777888886664.....567899***************86 PP

  == domain 3    score: 2.2 bits;  conditional E-value: 0.1
   TIGR03197 345 pgLYvllglGSRGllsapLaaelLaaqilgeplpleaellealhPaRf 392
                 ++++v++g+   G+l +p +a+l+a  ++g+    ++ ll++    Rf
  MMETSP1137-20121227|4807_1 391 RNVHVAGGYHRNGILLSPVCARLVADGVEGTLSENDEALLKQFACDRF 438
                 7999**************************999999999998888887 PP

>> TIGR03364  HpnW_proposed: FAD dependent oxidoreductase TIGR03364
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.0   0.0     2e-14   3.2e-12       3     205 ..      74     286 ..      72     312 .. 0.80
   2 ?    0.2   0.0      0.43        69     275     332 ..     320     378 ..     301     399 .. 0.85

  Alignments for each domain:
  == domain 1    score: 44.0 bits;  conditional E-value: 2e-14
   TIGR03364   3 vvvvGaGivGlahAlaaarrGlkVtvierssraaGAsvrNFGqvvvtgq..aagealelarrsreiwlelaekaglsvrenGslvlarteeelavl..eefaavreeae.ysvelLspaevaaklpalrldgllgglhladelrvepreaipalaeyLaeekgveflwntavtevets.......tvrtsrGevh.aeqvlVcsgadfetLfpelf 205
                  +vvG+G+ Gl+ Al+ + rG++Vt++ r+s  + A+    G+  + +   ++g++l+l +r+re ++ + + ++  +    +  +ar          +++a+ + + +   ++ L  +e++++ p + +d ++gg + + e++v+pr  +pal++  ++e gv++  + +v  ++++        vr + G+     q + c g+ +++L+p  +
  MMETSP1137-20121227|4807_1  74 ALVVGGGVAGLSVALELRTRGWEVTLLSRQS-SESATLAAGGMLAPQAErlSPGPLLDLCLRAREEFAPWLRSVEARAGGVNTGPVARGGFVSPAFdgDAVARWQPPMHaGPATWLGGDEMRHLEP-ALSDDICGGWWYPSEASVDPRLLMPALTAACKAE-GVNMVEGCEVVGLQAEnggvavrAVRLADGTERpVSQLVLCAGSWLRKLLPVPC 286
                 68***************************87.578************9733589***********9988877766554433333333332222222112333333333323699************.999**************************99988.**********999776689999999********9**************999665 PP

  == domain 2    score: 0.2 bits;  conditional E-value: 0.43
   TIGR03364 275 qeedGeliiGDsHeyeaaaepFd.deevdelllaeakeilglkelevverWqGvYassk 332
                 +++dG +++G + e ++  +    +  v++ll a ++++  l++++  e W+G  + ++
  MMETSP1137-20121227|4807_1 320 PRQDGRIVVGATEEPDEGFSTRStAGGVHTLLSAAISTMPSLSTYTLDEVWAGLRPTTP 378
                 789999****9999977777755366789999999999***************877665 PP

>> TIGR01373  soxB: sarcosine oxidase, beta subunit family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.2   0.0   2.1e-12   3.2e-10     192     402 ..     228     441 ..     222     444 .. 0.83

  Alignments for each domain:
  == domain 1    score: 37.2 bits;  conditional E-value: 2.1e-12
   TIGR01373 192 aadarGvdiiqncevtglikredg.rviGvetsrGfigakkvgvavaGnsskvaelaGlr.lplesyvlqal.vseplkpiidtvvlsnavhvyvsqsdkGelviGagidgynsyaqrGnlpileevleailelfpilsrvrllrswgGivdvspdaspiiakt.pldnlylncGwgtGGfkatpasGtvfaalla...kdephdlaapftldrfesG 402
                 a +a Gv++++ cev gl+ +++g +v+ v  + G+ +     v +a   s + +l  +  +p++  +l     +e   p +   v  +   +y+   + G +v+Ga  +  ++++ r +   +++ l+a +  +p ls   l   w+G+  ++pd  p+++ +    n+++  G+   G    p    ++a  +     ++++ l + f  drf +G
  MMETSP1137-20121227|4807_1 228 ACKAEGVNMVEGCEVVGLQAENGGvAVRAVRLADGTERPVSQLVLCA--GSWLRKLLPVPcVPIKGQMLSLSpPTEDHSPALMRTVFAER--CYLIPRQDGRIVVGATEEPDEGFSTRSTAGGVHTLLSAAISTMPSLSTYTLDEVWAGLRPTTPDLMPLLGPSgSWRNVHVAGGYHRNGILLSPVCARLVADGVEgtlSENDEALLKQFACDRFYQG 441
                 67899************888766535667777777666555445555..5678888888769****999754268999999988887765..57778888*************************************************************9862689**********************9986642224566778899*****9987 PP

>> TIGR03377  glycerol3P_GlpA: glycerol-3-phosphate dehydrogenase, anaerobic, A subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.2   0.3    0.0086       1.4       3      32 ..      75     104 ..      73     116 .. 0.87
   2 !   24.0   0.0   1.8e-08   2.8e-06     112     305 ..     188     375 ..     182     380 .. 0.82

  Alignments for each domain:
  == domain 1    score: 5.2 bits;  conditional E-value: 0.0086
   TIGR03377   3 vviGGGatGaGilRDlalRglkvvLlekkd 32 
                 +v+GGG  G  ++ +l  Rg +v+Ll ++ 
  MMETSP1137-20121227|4807_1  75 LVVGGGVAGLSVALELRTRGWEVTLLSRQS 104
                 79************************9985 PP

  == domain 2    score: 24.0 bits;  conditional E-value: 1.8e-08
   TIGR03377 112 ldpeealrlePalnkelikavkvp.DgtvDpfrlvaanvldakehGariltytkvvgliregdrvtgvkvedlktgeeeeieaevvvnaaGaWaqeiaeladlkielvpakGvllvlnhRlnnkvinRlrk.psdaDilvPgdt.isllGttsekvddiddleveqeevdelldegakliPalaeaRilrafaGvRP 305
                 l ++e+++lePal++++++ ++ p +++vDp  l+ a  ++ k +G +++  ++vvgl  e++ v +v++  l++g+e  +  ++ v  aG+W  ++     l +  vp kG +l l     ++    +r   ++   l+P +    ++G t+e  d+  +++ ++  v++ll    + +P l+++ +   +aG RP
  MMETSP1137-20121227|4807_1 188 LGGDEMRHLEPALSDDICGGWWYPsEASVDPRLLMPALTAACKAEGVNMVEGCEVVGLQAENGGV-AVRAVRLADGTERPV--SQLVLCAGSWLRKL-----LPVPCVPIKGQMLSLSPPTEDHSPALMRTvFAERCYLIPRQDgRIVVGATEEP-DEGFSTRSTAGGVHTLLSAAISTMPSLSTYTLDEVWAGLRP 375
                 667899***************9985699***8888888888999****************99986.577777777777665..4667799***9998.....78999999*******99888886666655147777888875505566777655.677778899999****************999999******9 PP

>> TIGR03467  HpnE: squalene-associated FAD-dependent desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   0.2   1.8e-07   2.9e-05       2      30 ..      75     103 ..      74     151 .. 0.87
   2 ?   -0.4   0.0      0.75   1.2e+02     215     271 ..     226     283 ..     219     303 .. 0.71

  Alignments for each domain:
  == domain 1    score: 21.4 bits;  conditional E-value: 1.8e-07
   TIGR03467   2 vvvGgGlAGLaAAveLaraGvrvtllEar 30 
                 +vvGgG+AGL+ A+eL ++G++vtll ++
  MMETSP1137-20121227|4807_1  75 LVVGGGVAGLSVALELRTRGWEVTLLSRQ 103
                 69***********************9764 PP

  == domain 2    score: -0.4 bits;  conditional E-value: 0.75
   TIGR03467 215 arylesrggevrlgtrvreleasaggiralve..aaeetlaadavvlAvpperaasllp 271
                  ++ +++g+++  g++v  l+a++gg+++++   a++ + + ++ vl +    +++llp
  MMETSP1137-20121227|4807_1 226 TAACKAEGVNMVEGCEVVGLQAENGGVAVRAVrlADGTERPVSQLVLCAG-SWLRKLLP 283
                 5667899*******************998765544544466666666433.33455555 PP

>> TIGR02734  crtI_fam: phytoene desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.2   3.4e-07   5.4e-05       1      31 [.      74     104 ..      74     107 .. 0.93

  Alignments for each domain:
  == domain 1    score: 19.9 bits;  conditional E-value: 3.4e-07
   TIGR02734   1 avViGaGlgGLAlAirLaaaGievtvlekrd 31 
                 a+V+G+G++GL++A+ L + G+evt+l +++
  MMETSP1137-20121227|4807_1  74 ALVVGGGVAGLSVALELRTRGWEVTLLSRQS 104
                 68*************************9875 PP

>> TIGR00551  nadB: L-aspartate oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0   3.7e-06   0.00058       5      53 ..      74     121 ..      70     130 .. 0.81

  Alignments for each domain:
  == domain 1    score: 16.5 bits;  conditional E-value: 3.7e-06
   TIGR00551   5 vvviGsGaagLsaalalaekyr.vvvlskaevkesasvyaqgGiaaalae 53 
                  +v+G+G+agLs+al l  ++  v++ls++ + esa+ +a gG+ a+ ae
  MMETSP1137-20121227|4807_1  74 ALVVGGGVAGLSVALELRTRGWeVTLLSRQ-SSESAT-LAAGGMLAPQAE 121
                 589**************999877*****98.555555.677888777665 PP

>> TIGR01988  Ubi-OHases: ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.2   6.6e-06     0.001       3      36 ..      75     107 ..      73     121 .. 0.88

  Alignments for each domain:
  == domain 1    score: 15.8 bits;  conditional E-value: 6.6e-06
   TIGR01988   3 vIvGgGlvGlalAlaLassadlkvalveakaaek 36 
                 ++vGgG++Gl++Al+L+ ++ ++v+l++++ +e+
  MMETSP1137-20121227|4807_1  75 LVVGGGVAGLSVALELRTRG-WEVTLLSRQSSES 107
                 79***************877.********98876 PP

>> TIGR02032  GG-red-SF: geranylgeranyl reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0   8.5e-06    0.0013       4      50 ..      75     122 ..      74     140 .. 0.90

  Alignments for each domain:
  == domain 1    score: 16.3 bits;  conditional E-value: 8.5e-06
   TIGR02032   4 vvvGaGpaGssaAlrlakkGlrVlllekkelpre.keCggalskrave 50 
                 +vvG+G aG s+Al+l + G +V ll +++   + ++ gg+l ++a+ 
  MMETSP1137-20121227|4807_1  75 LVVGGGVAGLSVALELRTRGWEVTLLSRQSSESAtLAAGGMLAPQAER 122
                 79***************************9999999999999998765 PP

>> TIGR03997  mycofact_OYE_2: mycofactocin system FadH/OYE family oxidoreductase 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.2   1.3e-05    0.0021     378     416 ..      70     108 ..      44     124 .. 0.82

  Alignments for each domain:
  == domain 1    score: 14.3 bits;  conditional E-value: 1.3e-05
   TIGR03997 378 rrkkvlvvGgGPaGleaaataarrGhrvtllereeelGG 416
                 +++  lvvGgG aGl+ a +  +rG +vtll r+++   
  MMETSP1137-20121227|4807_1  70 AERSALVVGGGVAGLSVALELRTRGWEVTLLSRQSSESA 108
                 34799***************************9987654 PP

>> TIGR00275  TIGR00275: flavoprotein, HI0933 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.2   0.2   0.00064       0.1       2      35 ..      75     108 ..      74     115 .. 0.85
   2 ?    3.3   0.0     0.041       6.5     108     159 ..     221     276 ..     208     279 .. 0.89

  Alignments for each domain:
  == domain 1    score: 9.2 bits;  conditional E-value: 0.00064
   TIGR00275   2 iiiGgGaaGlmaAitaaeegakVlllEknkkigk 35 
                 +++GgG aGl  A+++ ++g +V+ll ++++  +
  MMETSP1137-20121227|4807_1  75 LVVGGGVAGLSVALELRTRGWEVTLLSRQSSESA 108
                 79************************99877655 PP

  == domain 2    score: 3.3 bits;  conditional E-value: 0.041
   TIGR00275 108 vldaLlkelkelgvevlteskvksikkeeekfevet....ekkeleakkvilatGg 159
                 ++ aL+ ++k  gv++   ++v  ++ e++++ v++    +++e  +++++l+ G+
  MMETSP1137-20121227|4807_1 221 LMPALTAACKAEGVNMVEGCEVVGLQAENGGVAVRAvrlaDGTERPVSQLVLCAGS 276
                 56789************************99998877778899999*******998 PP

>> TIGR01790  carotene-cycl: lycopene cyclase family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.8   0.1   6.6e-05      0.01       2      31 ..      74     103 ..      73     110 .. 0.89

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 6.6e-05
   TIGR01790   2 liviGgGlAglaiAlelakpglrvqlieaa 31 
                 ++v+GgG Agl +Alel  +g +v l++ +
  MMETSP1137-20121227|4807_1  74 ALVVGGGVAGLSVALELRTRGWEVTLLSRQ 103
                 58**********************999854 PP

>> TIGR01984  UbiH: 2-polyprenyl-6-methoxyphenol 4-hydroxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.0   0.2   9.1e-05     0.014       3      37 ..      75     108 ..      73     114 .. 0.91

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 9.1e-05
   TIGR01984   3 iivGgglvGlslAlaLsrksklkialieaksaeaa 37 
                 ++vGgg++Gls+Al L + + ++++l+  +s e+a
  MMETSP1137-20121227|4807_1  75 LVVGGGVAGLSVALELRTRG-WEVTLLSRQSSESA 108
                 69******************.******99998876 PP

>> TIGR01812  sdhA_frdA_Gneg: succinate dehydrogenase or fumarate reductase, flavoprotein subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.1   9.7e-05     0.015       3      47 ..      75     117 ..      73     125 .. 0.82

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 9.7e-05
   TIGR01812   3 vivGaGlAGlraAveaakkglkvaviskvyptRsHsvaAqGGiaa 47 
                 ++vG+G+AGl  A+e+  +g +v ++s+     s + aA GG+ a
  MMETSP1137-20121227|4807_1  75 LVVGGGVAGLSVALELRTRGWEVTLLSRQS-SESATLAA-GGMLA 117
                 79*************************965.45667666.66665 PP

>> TIGR03329  Phn_aa_oxid: putative aminophosphonate oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.0      0.41        65      25      49 ..      72      96 ..      52     116 .. 0.72
   2 ?    5.4   0.0    0.0088       1.4     169     214 ..     205     250 ..     192     284 .. 0.74
   3 ?    2.3   0.0     0.078        12     329     391 ..     356     418 ..     323     432 .. 0.87

  Alignments for each domain:
  == domain 1    score: -0.1 bits;  conditional E-value: 0.41
   TIGR03329 25 advaivGGGftGlwtaillkqaepk 49
                    +vGGG +Gl  a+ l+ +  +
  MMETSP1137-20121227|4807_1 72 RSALVVGGGVAGLSVALELRTRGWE 96
                445689***********99987544 PP

  == domain 2    score: 5.4 bits;  conditional E-value: 0.0088
   TIGR03329 169 leGlyspvaasvqpgklvrGlrrvalelGveiyertpmtkleegqp 214
                   G++ p  asv+p +l+  l    ++ Gv++ e + + +l++ + 
  MMETSP1137-20121227|4807_1 205 CGGWWYPSEASVDPRLLMPALTAACKAEGVNMVEGCEVVGLQAENG 250
                 579*********************************9999986543 PP

  == domain 3    score: 2.3 bits;  conditional E-value: 0.078
   TIGR03329 329 kffpalaevpiaaswnGasdrsvtGlpffGkleearnvfyGfGysGnGvapsymGGqilsslv 391
                 + +p+l+   +   w+G    + + +p++G   + rnv    Gy  nG+  s +  ++++  v
  MMETSP1137-20121227|4807_1 356 STMPSLSTYTLDEVWAGLRPTTPDLMPLLGPSGSWRNVHVAGGYHRNGILLSPVCARLVADGV 418
                 468*********************************************998888888877655 PP

>> TIGR03378  glycerol3P_GlpB: glycerol-3-phosphate dehydrogenase, anaerobic, B subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.2   0.00023     0.036       4      31 ..      75     102 ..      73     115 .. 0.87

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 0.00023
   TIGR03378   4 iiiGgGlaGlscalrlaeaGkktaiiaa 31 
                 +++GgG+aGls al+l  +G  + ++++
  MMETSP1137-20121227|4807_1  75 LVVGGGVAGLSVALELRTRGWEVTLLSR 102
                 79*******************9999886 PP

>> TIGR01377  soxA_mon: sarcosine oxidase, monomeric form
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.0      0.23        36       3      30 ..      74     101 ..      73     106 .. 0.89
   2 ?    6.7   0.0    0.0036      0.57     268     376 ..     329     439 ..     216     444 .. 0.65

  Alignments for each domain:
  == domain 1    score: 0.8 bits;  conditional E-value: 0.23
   TIGR01377   3 vivvGaGvmGsaaayqLakrgkkvLLle 30 
                 ++vvG Gv G + a +L  rg +v Ll 
  MMETSP1137-20121227|4807_1  74 ALVVGGGVAGLSVALELRTRGWEVTLLS 101
                 68******************99988875 PP

  == domain 2    score: 6.7 bits;  conditional E-value: 0.0036
   TIGR01377 268 GqqvDPderdrekgadiedveeLkkfvkdrlpglk.eepkatelCmytktPDedfvlDlhpkyydnvvigaGfsGhGfklapvvGkiLaelamklea...eydlaafslrrfe 376
                 G + +Pde     +     v+ L +     +p l    ++ +   +  +tPD   +l   + + +nv +++G+   G  l+pv  +++a+      +   e  l++f  +rf 
  MMETSP1137-20121227|4807_1 329 GATEEPDEGFSTRS-TAGGVHTLLSAAISTMPSLStYTLDEVWAGLRPTTPDLMPLLGPSGSW-RNVHVAGGYHRNGILLSPVCARLVADGVEGTLSendEALLKQFACDRFY 439
                 44555555433333.445555555555666777764566777777778899999999999966.***********************99854332221235558888888886 PP

>> TIGR03315  Se_ygfK: putative selenate reductase, YgfK subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   0.0    0.0002     0.032     539     572 ..      73     106 ..      47     113 .. 0.81

  Alignments for each domain:
  == domain 1    score: 9.4 bits;  conditional E-value: 0.0002
   TIGR03315 539 kvaviGaGPaGlsagyflaraGlpvtvfekkeka 572
                    v+G+G aGls+++ l+  G +vt++ +++  
  MMETSP1137-20121227|4807_1  73 SALVVGGGVAGLSVALELRTRGWEVTLLSRQSSE 106
                 5569************************998765 PP

>> TIGR00292  TIGR00292: thiazole biosynthesis enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.1   0.00033     0.052      20      67 ..      70     117 ..      58     124 .. 0.91

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 0.00033
   TIGR00292  20 aesDviivGaGpsGLtaayylakeglkvvvlerklaiGGGswgGGmlf 67 
                 ae   ++vG+G +GL+ a  l  +g  v +l r+ +       GGml 
  MMETSP1137-20121227|4807_1  70 AERSALVVGGGVAGLSVALELRTRGWEVTLLSRQSSESATLAAGGMLA 117
                 566779***************************************985 PP

>> TIGR02733  desat_CrtD: C-3',4' desaturase CrtD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.2   0.00044      0.07       3      33 ..      73     103 ..      71     114 .. 0.86

  Alignments for each domain:
  == domain 1    score: 9.6 bits;  conditional E-value: 0.00044
   TIGR02733   3 svvviGaGiaGltaaallakrGlevtlleaa 33 
                 s +v+G+G+aGl  a  l  rG+evtll  +
  MMETSP1137-20121227|4807_1  73 SALVVGGGVAGLSVALELRTRGWEVTLLSRQ 103
                 678************************9765 PP

>> TIGR03385  CoA_CoA_reduc: CoA-disulfide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   0.0   0.00051     0.081     150     182 ..      72     104 ..      62     117 .. 0.91

  Alignments for each domain:
  == domain 1    score: 9.5 bits;  conditional E-value: 0.00051
   TIGR03385 150 ekvvviGgGyiglemvealkergkevtlierse 182
                 ++++v+GgG  gl ++  l++rg evtl+ r++
  MMETSP1137-20121227|4807_1  72 RSALVVGGGVAGLSVALELRTRGWEVTLLSRQS 104
                 5789************************99875 PP

>> TIGR01813  flavo_cyto_c: flavocytochrome c
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   0.1   0.00051      0.08       3      50 ..      75     119 ..      73     122 .. 0.85

  Alignments for each domain:
  == domain 1    score: 9.5 bits;  conditional E-value: 0.00051
   TIGR01813   3 vvvGsGlAGlsaaleakkaglaevvvleKapviGGNsaiaaggmnaak 50 
                 +vvG G+AGls ale++++g  ev +l ++ +    + +aaggm a++
  MMETSP1137-20121227|4807_1  75 LVVGGGVAGLSVALELRTRG-WEVTLLSRQSSE--SATLAAGGMLAPQ 119
                 79******************.99****998765..5678888887776 PP

>> TIGR01816  sdhA_forward: succinate dehydrogenase, flavoprotein subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   0.1   0.00064       0.1       5      48 ..      74     115 ..      71     121 .. 0.84

  Alignments for each domain:
  == domain 1    score: 8.5 bits;  conditional E-value: 0.00064
   TIGR01816   5 vvvvGaGGaGlraalelakeglktavvtklfPtrshtvaaqGGi 48 
                 ++vvG+G aGl  alel  +g +++ +++   + s t aa GG+
  MMETSP1137-20121227|4807_1  74 ALVVGGGVAGLSVALELRTRGWEVTLLSRQ-SSESATLAA-GGM 115
                 79*************************995.567888877.444 PP

>> TIGR00562  proto_IX_ox: protoporphyrinogen oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   0.0   0.00087      0.14       4      34 ..      73     101 ..      70     108 .. 0.84

  Alignments for each domain:
  == domain 1    score: 8.5 bits;  conditional E-value: 0.00087
   TIGR00562   4 kvvvvGgGisGLciayalekerpdvelvlvE 34 
                    vvGgG++GL++a  l+++  + e++l+ 
  MMETSP1137-20121227|4807_1  73 SALVVGGGVAGLSVALELRTR--GWEVTLLS 101
                 6789**************999..78888765 PP

>> TIGR02023  BchP-ChlP: geranylgeranyl reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   0.1   0.00091      0.14       4      33 ..      75     104 ..      72     120 .. 0.88
   2 ?   -3.4   0.4       4.8   7.6e+02     117     158 ..     688     728 ..     676     736 .. 0.73

  Alignments for each domain:
  == domain 1    score: 8.9 bits;  conditional E-value: 0.00091
   TIGR02023   4 lviGggpsGaaaaetLakagievillerel 33 
                 lv+Ggg++G + a +L+  g ev ll r+ 
  MMETSP1137-20121227|4807_1  75 LVVGGGVAGLSVALELRTRGWEVTLLSRQS 104
                 89*************************985 PP

  == domain 2    score: -3.4 bits;  conditional E-value: 4.8
   TIGR02023 117 lerdedkltleyrekekeageekksveadvviGaDGakskva 158
                   ++e+ ++++y  +e++ g + +   + +   aD a + +a
  MMETSP1137-20121227|4807_1 688 AAKSENGMQIDYS-RETANGASSSGAYTTSSAAADAAAAATA 728
                 4567778888998.5567777777778888888888888887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (925 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       144  (0.0351048); expected 82.0 (0.02)
Passed bias filter:                      126  (0.0307167); expected 82.0 (0.02)
Passed Vit filter:                        52  (0.0126767); expected 4.1 (0.001)
Passed Fwd filter:                        27  (0.00658216); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              26  [number of targets reported over threshold]
# CPU time: 0.92u 0.16s 00:00:01.08 Elapsed: 00:00:01.04
# Mc/sec: 1173.94
//
Query:       MMETSP1137-20121227|4808_1  [L=544]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (544 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        91  (0.0221843); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.13s 00:00:00.50 Elapsed: 00:00:00.44
# Mc/sec: 1631.87
//
Query:       MMETSP1137-20121227|4809_1  [L=74]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (74 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        48  (0.0117016); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.12s 00:00:00.24 Elapsed: 00:00:00.25
# Mc/sec: 390.69
//
Query:       MMETSP1137-20121227|4811_1  [L=105]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.015   13.3   0.3      0.021   12.8   0.2    1.2  1  TIGR02894 DNA_bind_RsfA: transcription factor, RsfA family


Domain annotation for each model (and alignments):
>> TIGR02894  DNA_bind_RsfA: transcription factor, RsfA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.2   5.1e-06     0.021      97     134 ..      66     103 ..      51     105 .] 0.82

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 5.1e-06
   TIGR02894  97 eeaeklrkekeklkeeleslqkrneeLekeleklkkkk 134
                 +++e+l+ e+e+l+++ + l+ + +e++k+le+l+ k+
  MMETSP1137-20121227|4811_1  66 VDVEQLKAENEQLRTKCTDLEAKLDEVNKKLEELTPKE 103
                 67889999999999999999999999999999998665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (105 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       174  (0.0424183); expected 82.0 (0.02)
Passed bias filter:                      156  (0.0380302); expected 82.0 (0.02)
Passed Vit filter:                        32  (0.00780107); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.17u 0.15s 00:00:00.32 Elapsed: 00:00:00.32
# Mc/sec: 433.09
//
Query:       MMETSP1137-20121227|4812_1  [L=297]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (297 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       135  (0.0329108); expected 82.0 (0.02)
Passed bias filter:                      104  (0.0253535); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.17s 00:00:00.43 Elapsed: 00:00:00.75
# Mc/sec: 522.68
//
Query:       MMETSP1137-20121227|4813_1  [L=45]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.8e-08   32.0   0.1    1.9e-08   31.9   0.1    1.0  1  TIGR02303 HpaG-C-term: 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase, C-terminal subunit
    2.4e-05   21.8   0.0    2.6e-05   21.7   0.0    1.0  1  TIGR02305 HpaG-N-term: 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase, N-terminal subunit


Domain annotation for each model (and alignments):
>> TIGR02303  HpaG-C-term: 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase, C-terminal subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.9   0.1   9.4e-12   1.9e-08     203     245 .]       1      43 [.       1      43 [. 0.96

  Alignments for each domain:
  == domain 1    score: 31.9 bits;  conditional E-value: 9.4e-12
   TIGR02303 203 mtlepgdliltGtpkGladvkpGdvvrleiegvGklentivse 245
                 mtlepgdl++tGtp G++ +++Gd ++  i+g  +++  +v+e
  MMETSP1137-20121227|4813_1   1 MTLEPGDLVVTGTPAGVSRLHAGDRITAGIDGYCEMQVDVVQE 43 
                 9********************************9999988876 PP

>> TIGR02305  HpaG-N-term: 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase, N-terminal subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.7   0.0   1.3e-08   2.6e-05     166     202 ..       1      37 [.       1      40 [. 0.94

  Alignments for each domain:
  == domain 1    score: 21.7 bits;  conditional E-value: 1.3e-08
   TIGR02305 166 mtlkaGDvlllGtaeervkvkegdrvrveieelgeLe 202
                 mtl++GD++++Gt+    ++++gdr++  i++  e++
  MMETSP1137-20121227|4813_1   1 MTLEPGDLVVTGTPAGVSRLHAGDRITAGIDGYCEMQ 37 
                 9******************************999887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (45 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        69  (0.0168211); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.12u 0.14s 00:00:00.26 Elapsed: 00:00:00.25
# Mc/sec: 237.58
//
Query:       MMETSP1137-20121227|4814_1  [L=87]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (87 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        67  (0.0163335); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.15s 00:00:00.28 Elapsed: 00:00:00.33
# Mc/sec: 347.97
//
Query:       MMETSP1137-20121227|4815_1  [L=233]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (233 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        51  (0.012433); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.16s 00:00:00.36 Elapsed: 00:00:00.25
# Mc/sec: 1230.14
//
Query:       MMETSP1137-20121227|4816_1  [L=336]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (336 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       105  (0.0255973); expected 82.0 (0.02)
Passed bias filter:                      104  (0.0253535); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.18s 00:00:00.45 Elapsed: 00:00:00.42
# Mc/sec: 1055.91
//
Query:       MMETSP1137-20121227|4817_1  [L=984]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (984 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       111  (0.02706); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.55u 0.15s 00:00:00.70 Elapsed: 00:00:00.65
# Mc/sec: 1998.11
//
Query:       MMETSP1137-20121227|4818_1  [L=189]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (189 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.18s 00:00:00.35 Elapsed: 00:00:00.28
# Mc/sec: 890.93
//
Query:       MMETSP1137-20121227|4819_1  [L=252]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (252 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        73  (0.0177962); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.17s 00:00:00.40 Elapsed: 00:00:00.31
# Mc/sec: 1072.94
//
Query:       MMETSP1137-20121227|4820_1  [L=422]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (422 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       148  (0.03608); expected 82.0 (0.02)
Passed bias filter:                      110  (0.0268162); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.13s 00:00:00.44 Elapsed: 00:00:00.44
# Mc/sec: 1265.90
//
Query:       MMETSP1137-20121227|4821_1  [L=233]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      4e-12   43.8   0.1    6.2e-12   43.2   0.1    1.2  1  TIGR02476 BluB: cob(II)yrinic acid a,c-diamide reductase
    2.1e-07   28.7   0.6    4.6e-07   27.6   0.4    1.6  1  TIGR03553 F420_FbiB_CTERM: F420 biosynthesis protein FbiB, C-terminal domain


Domain annotation for each model (and alignments):
>> TIGR02476  BluB: cob(II)yrinic acid a,c-diamide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.2   0.1     3e-15   6.2e-12       3     148 ..      22     168 ..      20     173 .. 0.75

  Alignments for each domain:
  == domain 1    score: 43.2 bits;  conditional E-value: 3e-15
   TIGR02476   3 daeraavyrllkeRRDv..RrfrsdPvdeevlerlleaahlAPsvGlsqPWrivrveeeakreavlalfeeaneaaaklyegerakqykrL.....klegireapvqlavflddaraekhglGrktmpemle.ysvalaiqnlwlaaRaeGlGv 148
                 ++  +av++l+++RR +  ++f    v+  v+ r leaa+ AP  G ++PWr+v+   +   ea+ +l + +++a+++l+++  +k+ ++L     k + + +    +a+ +   + +k   G + mp  +e ++ a+a+qnl l + aeG   
  MMETSP1137-20121227|4821_1  22 KDRSDAVLKLIQQRRSIfpKDFNGSQVPRSVIDRALEAANWAPTHGKTEPWRFVVFAGA---EAIANLESVKRAATTQLFADSPEKLRAALdkmdrKAKDLVNVQYIIAICCKRVPNRK---G-ELMPMWEEqAACACAVQNLHLQLTAEGFCG 168
                 566789**********97779999******************************98665...567777777777888888877666655554223355566666666777775555333...3.3467665515679**************865 PP

>> TIGR03553  F420_FbiB_CTERM: F420 biosynthesis protein FbiB, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.6   0.4   2.3e-10   4.6e-07       3     145 ..      32     172 ..      30     224 .. 0.79

  Alignments for each domain:
  == domain 1    score: 27.6 bits;  conditional E-value: 2.3e-10
   TIGR03553   3 vllrrsv..refsadpvdpdavraavaealtapaphhtrpvrfvlvedaeerarlldamkdkwradlradglse..daverrvarGdilldapelvipvlvldGahsypderraaaeetmftvavGaavqallvalaveglGscwvg 145
                 +++rrs+  ++f    v+  ++++a+ +a  ap+  +t p+rfv+   ae   + l+ +k + ++ l ad+ ++  +a+++  ++ + l++  +++  +     ++  p+++ +         a   avq+l + l++eg    w +
  MMETSP1137-20121227|4821_1  32 IQQRRSIfpKDFNGSQVPRSVIDRALEAANWAPTHGKTEPWRFVVFAGAEA-IANLESVKRAATTQLFADSPEKlrAALDKMDRKAKDLVNVQYIIAIC-----CKRVPNRKGELMPMWEEQAACACAVQNLHLQLTAEGFCGYWSS 172
                 67899997779*********************************9977666.55678999999*******87642255666666666666666555444.....4556665555555555567889999999999999999988865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (233 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       114  (0.0277913); expected 82.0 (0.02)
Passed bias filter:                      103  (0.0251097); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.24u 0.17s 00:00:00.41 Elapsed: 00:00:00.40
# Mc/sec: 768.84
//
Query:       MMETSP1137-20121227|4822_1  [L=202]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (202 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       123  (0.0299854); expected 82.0 (0.02)
Passed bias filter:                      113  (0.0275475); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.17s 00:00:00.37 Elapsed: 00:00:00.32
# Mc/sec: 833.18
//
Query:       MMETSP1137-20121227|4823_1  [L=182]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (182 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       152  (0.0370551); expected 82.0 (0.02)
Passed bias filter:                      109  (0.0265724); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.17s 00:00:00.35 Elapsed: 00:00:00.50
# Mc/sec: 480.44
//
Query:       MMETSP1137-20121227|4824_1  [L=321]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (321 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       106  (0.0258411); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.12s 00:00:00.36 Elapsed: 00:00:00.48
# Mc/sec: 882.68
//
Query:       MMETSP1137-20121227|4825_1  [L=44]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (44 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        38  (0.00926377); expected 82.0 (0.02)
Passed bias filter:                       38  (0.00926377); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.15s 00:00:00.25 Elapsed: 00:00:00.26
# Mc/sec: 223.37
//
Query:       MMETSP1137-20121227|4826_1  [L=782]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (782 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       363  (0.0884934); expected 82.0 (0.02)
Passed bias filter:                      132  (0.0321794); expected 82.0 (0.02)
Passed Vit filter:                        19  (0.00463189); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.56u 0.17s 00:00:00.73 Elapsed: 00:00:00.56
# Mc/sec: 1843.13
//
Query:       MMETSP1137-20121227|4827_1  [L=712]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.5e-85  285.5  26.8    3.2e-85  284.4  18.6    1.5  1  TIGR00801 ncs2: uracil-xanthine permease
    9.7e-56  187.1  28.1    4.4e-36  122.3   3.1    4.2  3  TIGR03173 pbuX: xanthine permease
    2.1e-12   44.3  18.2    1.7e-09   34.8   2.6    3.2  2  TIGR03616 RutG: pyrimidine utilization transport protein G


Domain annotation for each model (and alignments):
>> TIGR00801  ncs2: uracil-xanthine permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  284.4  18.6   2.3e-88   3.2e-85       3     392 ..      71     554 ..      69     570 .. 0.91

  Alignments for each domain:
  == domain 1    score: 284.4 bits;  conditional E-value: 2.3e-88
   TIGR00801   3 pllqtlvlglqhllamfaavvlvp.llvgaal.lsae.......elqylvsisLlvsGigtllqllrtkvv.......iglpsvlgssfafvt.....pviaissg.................lgveaalgaliatglvvallellikklgsrllkklfpPvVtGpvvmlIGlsLipvavkdaaggeaaassn.......................efgslenlllallvlaliillerfakgllksisvliGlvvGyilalalg.................................lvdfssvkeapwfslpklltfglsfeleailtllavaivvlvesiGdltaladvsrrelsg...dkrlkrgvladGlatllaglvgstPvttfaqniGvialTrvasrlvivvaavilvvlGlvpkiaalisaIPsaVlGGaslllFgvvaasGirilirakldlrrnrliiaaSvalglgvtlvpdif 392
                 pll +l++g qh lam+a++ +   ll++ +  ++ +       +++y+vs + ++sGi+t +q++r k++       +gl+sv+g+sf+f       +v+ is++                    ++ +g +++t +v+alle++i++l+++ +kklfpPvVtG+ vmlIG +Li+ ++k ++gg   + +n                        fg++++++l++ vla+ ++++ f++++lks  +  +l++G++++++                                   + d +++k a ++++ + +tf+l f  e +l++l++++v+++e++Gd+   +  s+ +  g   d+r+++g+ladGl++++a l++s+P+ttf+qn+G+i+lTr+asr +++ +a++l+++G+++ki++++ +IP  V+GG+ l+ F++v ++G+++ +++ l+ rrn +i+++S+++glgv+  p+ f
  MMETSP1137-20121227|4827_1  71 PLLLSLIMGFQHCLAMLAGIATSGgLLIAGDAcFAWQydsemcsAQAYMVSAAWITSGILTCVQVFRAKIRgtryylgTGLISVMGTSFTFLPiardmVVSSISDAkqegkctvnsvgiidcaGYGKEGYGRFLGTCIVAALLEVGISFLSPKTMKKLFPPVVTGASVMLIGGGLISSGIKYIGGGV-FCAENqasreaafgsgpqlctengevvlAFGAPQYVGLGFSVLAMAVVIQFFGSPFLKSTFIFWALMFGCFVSALTKyeagegdkttcdaepdlpcigglanavpgkdyvYWDNAGIKSADAITFLWTTTFPLGFAPEYFLPVLIAYFVSAAETVGDIACSCVASQVPAMGqdfDSRVQGGLLADGLNSMIACLFTSPPNTTFSQNNGIISLTRCASRSAGFSCAFWLILFGVFGKIGGAFISIPICVVGGMVLMCFSMVFIAGMKLACTN-LT-RRNSFILMLSIGIGLGVAMEPQLF 554
                 6678899************9997537777777654321122333689**********************99999*****************88767663333333377889999999998884334679*********************************************************9.555556999****************************************************************99999999***************************9999*************************************************99999998888999*******************************************************************************************99986.66.7******************99988 PP

>> TIGR03173  pbuX: xanthine permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.0   6.0   2.2e-19     3e-16       1     146 [.      78     265 ..      78     278 .. 0.77
   2 !   15.4   0.4   9.7e-07    0.0013     138     190 ..     281     333 ..     275     337 .. 0.91
   3 !  122.3   3.1   3.2e-39   4.4e-36     196     377 ..     372     554 ..     358     558 .. 0.90

  Alignments for each domain:
  == domain 1    score: 57.0 bits;  conditional E-value: 2.2e-19
   TIGR03173   1 lglqHvlamyagavav.plivagal....glske...elayLisadllvaGiatliQllgvg......kvGirLpvvqGvsfaavapmiaiga..........................kkglsaifGavivaglvvlllapffsk.lvklfppvVtGtvilliGlsLlpvainsaagge.gakefgs 146
                 +g+qH lam+ag+ +   l++ag +    + ++e     ay++sa+ +++Gi t++Q+++ +      ++G++L+ v+G+sf+++ ++  ++                           k+g++  +G+ iva+l+++ ++++  k ++klfppvVtG  ++liG  L+  +i++++gg   a++ +s
  MMETSP1137-20121227|4827_1  78 MGFQHCLAMLAGIATSgGLLIAGDAcfawQYDSEmcsAQAYMVSAAWITSGILTCVQVFRAKirgtryYLGTGLISVMGTSFTFLPIARDMVVssisdakqegkctvnsvgiidcagygKEGYGRFLGTCIVAALLEVGISFLSPKtMKKLFPPVVTGASVMLIGGGLISSGIKYIGGGVfCAENQAS 265
                 69**********9997358888754122244544222468******************987633333369999***********98765554444667876666666666666655555555*******************998552889*****************************975555554 PP

  == domain 2    score: 15.4 bits;  conditional E-value: 9.7e-07
   TIGR03173 138 gegakefgslknlllallvlvvilllsrfakgflksiavllglvvGtvvAlll 190
                 ge   +fg ++ ++l++ vl++ ++++ f++ flks+ +  +l++G+ v++l+
  MMETSP1137-20121227|4827_1 281 GEVVLAFGAPQYVGLGFSVLAMAVVIQFFGSPFLKSTFIFWALMFGCFVSALT 333
                 556678*****************************************998875 PP

  == domain 3    score: 122.3 bits;  conditional E-value: 3.2e-39
   TIGR03173 196 skvaeaallalpkplkfglptfdlaailslllvalvslveatGdllAlseivgkkiee....kelarglradglasllgglfnsfpltsfsqNvGlvqltgvksrkvvaaagviLvllGllPklaalvasiPapVlGGaalvmfgmvaaaGirilskvdfkerknllivavslglglgvtlvpell 377
                  ++++a+ +++    +f l  f  + +l++l+ ++vs+ e++Gd+      ++ ++      +++++gl+adgl+s+++ lf+s p+t+fsqN+G+++lt+ +sr +   ++ +L+l+G++ k++  + siP  V+GG++l+ f+mv +aG++ l+ +++++r n +i+ +s+g+glgv ++p+l+
  MMETSP1137-20121227|4827_1 372 AGIKSADAITFLWTTTFPL-GFAPEYFLPVLIAYFVSAAETVGDIACSCVASQVPAMGqdfdSRVQGGLLADGLNSMIACLFTSPPNTTFSQNNGIISLTRCASRSAGFSCAFWLILFGVFGKIGGAFISIPICVVGGMVLMCFSMVFIAGMK-LACTNLTRR-NSFILMLSIGIGLGVAMEPQLF 554
                 5678888888888888877.99**********************765444444444333444899***************************************************************************************9.788999999.*******************987 PP

>> TIGR03616  RutG: pyrimidine utilization transport protein G
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.3   4.5   0.00013      0.18     116     171 ..     207     258 ..      53     262 .. 0.75
   2 !   34.8   2.6   1.2e-12   1.7e-09     273     395 ..     426     546 ..     392     564 .. 0.83

  Alignments for each domain:
  == domain 1    score: 8.3 bits;  conditional E-value: 0.00013
   TIGR03616 116 iiacglvyaviglvvmkvgtrwierlmppvvtgavvmaiglnlapiavksvsasaf 171
                  i+  l+ +     +  +  + +++l+ppvvtga vm+ig  l    +k + +  f
  MMETSP1137-20121227|4827_1 207 CIVAALLEVG----ISFLSPKTMKKLFPPVVTGASVMLIGGGLISSGIKYIGGGVF 258
                 3333333222....2223445689****************9999999988877655 PP

  == domain 2    score: 34.8 bits;  conditional E-value: 1.2e-12
   TIGR03616 273 mtgrnldpylgrafvgdglatmlsgsvggtgvttyaenigvmavtkvystlvfvaaavvaillglspkfgalihtipaavlggasivvfgliavagariwvqnkvdlsqngnlilvavtlvlg 395
                   g+++d  +  ++++dgl +m+++       tt+++n g++++t+  s     ++a   il+g+  k+g    +ip +v+gg  ++ f ++ +ag ++   n      n+ +++ ++ + lg
  MMETSP1137-20121227|4827_1 426 AMGQDFDSRVQGGLLADGLNSMIACLFTSPPNTTFSQNNGIISLTRCASRSAGFSCAFWLILFGVFGKIGGAFISIPICVVGGMVLMCFSMVFIAGMKLACTNLT--RRNSFILMLSIGIGLG 546
                 3599************************************************999***************9999************************9887743..4566666766666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (712 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       108  (0.0263286); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.53u 0.17s 00:00:00.70 Elapsed: 00:00:00.60
# Mc/sec: 1566.27
//
Query:       MMETSP1137-20121227|4828_1  [L=390]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (390 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        68  (0.0165773); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.16s 00:00:00.44 Elapsed: 00:00:00.49
# Mc/sec: 1050.53
//
Query:       MMETSP1137-20121227|4829_1  [L=185]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (185 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        83  (0.020234); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.14s 00:00:00.33 Elapsed: 00:00:00.30
# Mc/sec: 813.93
//
Query:       MMETSP1137-20121227|4830_1  [L=93]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (93 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        41  (0.00999512); expected 82.0 (0.02)
Passed bias filter:                       37  (0.00901999); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.43
# Mc/sec: 285.46
//
Query:       MMETSP1137-20121227|4831_1  [L=573]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-06   25.3   0.0      2e-06   24.8   0.0    1.1  1  TIGR03229 benzo_1_2_benA: benzoate 1,2-dioxygenase, large subunit
     0.0077   12.8   0.0      0.011   12.3   0.0    1.1  1  TIGR03228 anthran_1_2_A: anthranilate 1,2-dioxygenase, large subunit


Domain annotation for each model (and alignments):
>> TIGR03229  benzo_1_2_benA: benzoate 1,2-dioxygenase, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.8   0.0   9.8e-10     2e-06      32     121 ..     133     220 ..     115     230 .. 0.80

  Alignments for each domain:
  == domain 1    score: 24.8 bits;  conditional E-value: 9.8e-10
   TIGR03229  32 kyifegnwiylahesqipnkndyyttklgrqpiliarnkdgelnalinacshrgamlcrhkrgnkatytcpfhgwtfnnsgkllkvkdpe 121
                 ++ fe  w  +   s          t lgr+ +l  r+ dg   ++ +ac hr a l+  +    + + c fhgw f+ +gk  k+ + +
  MMETSP1137-20121227|4831_1 133 RFTFERAWYPVMPISYAETDRPNAFTLLGRRMVL-WRSADG-WACVEDACPHRLAPLSTGRVKSDGNLMCRFHGWEFAGDGKCAKIPNAS 220
                 5667777766666666555555555779998775.578777.6899***************9**********************997654 PP

>> TIGR03228  anthran_1_2_A: anthranilate 1,2-dioxygenase, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.3   0.0   5.4e-06     0.011      32     118 ..     133     217 ..     112     227 .. 0.75

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 5.4e-06
   TIGR03228  32 elifeknw..iyacheselannhdfvtlragrqplivtrdgegelhalvnacehrgatltrvgkgnqsvftcpfhawcyksdgrlvkvk 118
                  + fe++w  +     +e  +++ f    +gr+ +++ r  +g   ++ +ac hr a l       +  + c fh w +  dg+  k+ 
  MMETSP1137-20121227|4831_1 133 RFTFERAWypVMPISYAETDRPNAFTL--LGRR-MVLWRSADGW-ACVEDACPHRLAPLSTGRVKSDGNLMCRFHGWEFAGDGKCAKIP 217
                 566888883334445567777777754..4664.7778888874.56789*********98888888999**************99974 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (573 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        93  (0.0226719); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.16s 00:00:00.56 Elapsed: 00:00:00.41
# Mc/sec: 1844.63
//
Query:       MMETSP1137-20121227|4834_1  [L=368]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.2e-09   34.6   0.0     0.0013   16.2   0.0    3.0  3  TIGR01262 maiA: maleylacetoacetate isomerase


Domain annotation for each model (and alignments):
>> TIGR01262  maiA: maleylacetoacetate isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0      0.21   8.6e+02       2      27 ..      66      91 ..      65      93 .. 0.85
   2 !   16.2   0.0   3.1e-07    0.0013      43      78 ..     125     161 ..     118     169 .. 0.86
   3 !   14.7   0.0   9.4e-07    0.0038      79     171 ..     179     260 ..     175     267 .. 0.78

  Alignments for each domain:
  == domain 1    score: -2.8 bits;  conditional E-value: 0.21
   TIGR01262  2 lYsyfrSsasyRvRiaLaLkgidyes 27
                ++s +    ++R  +aL+ ++i y+ 
  MMETSP1137-20121227|4834_1 66 YFSAWFCPFAHRATLALEHHQIPYQW 91
                78888889999999999999999985 PP

  == domain 2    score: 16.2 bits;  conditional E-value: 3.1e-07
   TIGR01262  43 fkalNPqelvPtLkide.gevltqSlAiieyLeetyp 78 
                   a NPq+ vPtL ++  g+ +t+Sl  ie+++e  +
  MMETSP1137-20121227|4834_1 125 LLAANPQGMVPTLLDETtGRAVTESLVCIEFIDELAA 161
                 5789********988865899************9765 PP

  == domain 3    score: 14.7 bits;  conditional E-value: 9.4e-07
   TIGR01262  79 epaLlpkdpakrarvralalliacdihPlqNlrvlqlleeklgvdeeekkewlkhwiekGlaalEellkekagafcvGdevtladvcLvpqvy 171
                  p+Llp+ p +rar+r  a ++  ++      +vl ++       +ee+++ +    ek l++l + ++ ++g+f  Gd+++ +d++L p  y
  MMETSP1137-20121227|4834_1 179 APPLLPSCPFERARARLAADAVNKSVTSA-YYSVLMRID------AEERRQAF----EKLLNGLRSFVRGSRGDFWGGDTLGYVDCVLLPYAY 260
                 689*******************9998754.455666555......34444433....44466677889*********************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (368 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        65  (0.0158459); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.29u 0.16s 00:00:00.44 Elapsed: 00:00:00.39
# Mc/sec: 1245.44
//
Query:       MMETSP1137-20121227|4835_1  [L=301]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.8e-06   23.6   0.0    8.6e-06   23.0   0.0    1.2  1  TIGR00745 apbA_panE: 2-dehydropantoate 2-reductase


Domain annotation for each model (and alignments):
>> TIGR00745  apbA_panE: 2-dehydropantoate 2-reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.0   0.0   2.1e-09   8.6e-06      95     246 ..     103     250 ..      81     256 .. 0.73

  Alignments for each domain:
  == domain 1    score: 23.0 bits;  conditional E-value: 2.1e-09
   TIGR00745  95 ntvvlllqNGlgneeklrellpe.rkvllGvvthgaareepgvvhhagegktkigklpgeekeealeelaellkeagle..aeltedilaalwkKllvNaaiNpltalldcknGelleneearelleslidEvvqvarae.gveladdlveevlra 246
                 ++ ++++qNG+      ++ l + ++vll +   ++ ++    +  +  ++++ + +++++      ++a+ l + gl   ++  +d+++a+++K ++++a+  ++a ++c +Ge+ +  ++   l+sl+ E v++ +a+ g++l++ + ++ ++ 
  MMETSP1137-20121227|4835_1 103 RSDLVFMQNGMLGDFLEEQGLSDaTQVLLYLAVAKFGEKPTDGITDTNPEGLTTATGKWAG------AFAARLANGGLTcqVKDGDDYKRAMLEKHVWICAFMLVGARHGCTVGEVES--AHADELRSLVGELVAAGEAKlGIKLSEGAFDRLAAY 250
                 5678888888866655555555556666666666666665555555556666666666663......4677777888873344457*******************************6..788999**********99643888888887776655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (301 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        73  (0.0177962); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.24u 0.15s 00:00:00.39 Elapsed: 00:00:00.39
# Mc/sec: 1018.69
//
Query:       MMETSP1137-20121227|4836_1  [L=617]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.4e-67  222.2   0.0    2.3e-66  220.8   0.0    1.7  2  TIGR00505 ribA: GTP cyclohydrolase II
      3e-15   54.1   0.9    1.6e-10   38.7   0.3    2.3  2  TIGR00506 ribB: 3,4-dihydroxy-2-butanone-4-phosphate synthase
  ------ inclusion threshold ------
        1.1    4.9   7.0        1.6    4.3   4.9    1.1  1  TIGR03658 IsdH_HarA: haptoglobin-binding heme uptake protein HarA


Domain annotation for each model (and alignments):
>> TIGR00505  ribA: GTP cyclohydrolase II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0      0.56   7.6e+02      45      58 ..      18      31 ..       7      37 .. 0.81
   2 !  220.8   0.0   1.7e-69   2.3e-66       6     191 .]     369     562 ..     365     562 .. 0.94

  Alignments for each domain:
  == domain 1    score: -2.7 bits;  conditional E-value: 0.56
   TIGR00505 45 vrihseCltGdalf 58
                +r  se ltG++++
  MMETSP1137-20121227|4836_1 18 ARWRSEALTGESAM 31
                68899*****9875 PP

  == domain 2    score: 220.8 bits;  conditional E-value: 1.7e-69
   TIGR00505   6 aklptkyGklkivgfkekeddkeelllvkadis.a......eedvlvrihseCltGdalfslrCdCGeqleralkliakegkGviiylr.qeGrgiGlinklkayalqdkGadtveanlelgfkaderdfslaaeiledlgvkkvrlltnnPekieelkkaglkvvervpliveenkenekyletkkekmGhll 191
                 a++ptk+G +++ ++++k d  e+++lvk+d +         + +lvr hseC tGd++ slrCdCG qle+alk i+ +g Gv++ylr qeGrgiGl  k++ay+lq++G dt++an+elg ++d r+++ +a+il+dlg++++rl+ nnP+k   l+  gl++vervp  +  n en  yl+tk e+mGhll
  MMETSP1137-20121227|4836_1 369 ARMPTKFGLFMAHCYRSKIDGVEHIALVKSDSEdLdtpfckSRAALVRAHSECCTGDVFGSLRCDCGPQLEQALKSIDADGYGVLLYLRgQEGRGIGLGAKIHAYSLQERGLDTMDANTELGLPVDSREYGTGAQILTDLGIRDMRLISNNPKKFFGLTGFGLRIVERVPSHIAPNPENLAYLKTKEERMGHLL 562
                 789**************************9876431111114568***************************************************************************************************************************************************97 PP

>> TIGR00506  ribB: 3,4-dihydroxy-2-butanone-4-phosphate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.0     5e-06    0.0068       3      55 ..      81     133 ..      79     183 .. 0.90
   2 !   38.7   0.3   1.2e-13   1.6e-10      83     202 ..     237     353 ..     218     355 .. 0.72

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 5e-06
   TIGR00506   3 erveealealkkgeivlvlDdedREnEgDlivaaekvtpekiallakdasGli 55 
                 e+++  ++a+++g+ v++ +d d E    +++a + vt  +i +l ++a+ l 
  MMETSP1137-20121227|4836_1  81 EALQGVIDAFRQGNLVMLSEDGDSEAAVSFMIAPQAVTACHIDFLLEHAKRLQ 133
                 5677889*****************************************98764 PP

  == domain 2    score: 38.7 bits;  conditional E-value: 1.2e-13
   TIGR00506  83 dikydeksavsievakr.tttGisaadRaltiraladvvke.gkdfrrPGHvflLrAadggvlkRaGhtEasvdLaelaglkpvavicEllnddGtmlrkeelveyakkhdlkllsiedlie 202
                 d     +   + +v +  t  G +a   a+  +a + ++    ++fr PG v l  A++ggvl+RaG tEa ++La+++gl pv+v + l    G     + l + a + +l++ s +dl++
  MMETSP1137-20121227|4836_1 237 DADATAEADATADVTASsTVAGTTAGANAFAFNAHEASAGGgKHSFRCPGAVPLACARKGGVLHRAGATEAVIELARISGLPPVGVHATLPAS-G----LDALRDAAARWGLTYASTADLVA 353
                 444444455666777776999999999999999766666652469****************************************98766433.2....23334445555566666666665 PP

>> TIGR03658  IsdH_HarA: haptoglobin-binding heme uptake protein HarA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   4.9    0.0012       1.6     672     733 ..     191     255 ..     177     265 .. 0.87

  Alignments for each domain:
  == domain 1    score: 4.3 bits;  conditional E-value: 0.0012
   TIGR03658 672 nvqtgqegkvadtd...vaensstatnpkdasdkadviepesdvvkdadnnidkdvqhdvdhlsd 733
                 n   g+eg+ ad+d   v+ n  ta     ++d ad    ++d   dad   + d   dv   s 
  MMETSP1137-20121227|4836_1 191 NFGLGDEGQTADADttaVTANGDTAGATDATADVADTTTAKADATADADATAEADATADVTASST 255
                 55679999999976444788999**999999****************************987765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (617 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       147  (0.0358362); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.41u 0.12s 00:00:00.53 Elapsed: 00:00:00.56
# Mc/sec: 1428.72
//
Query:       MMETSP1137-20121227|4837_1  [L=1020]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.017   12.5   0.5      0.031   11.6   0.3    1.4  1  TIGR01065 hlyIII: channel protein, hemolysin III family


Domain annotation for each model (and alignments):
>> TIGR01065  hlyIII: channel protein, hemolysin III family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.3   7.6e-06     0.031     140     201 ..     659     722 ..     633     724 .. 0.75

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 7.6e-06
   TIGR01065 140 vvktllenlsgaalvlLalGGvlYtvGavfyalkekiplk.la.HaiwHlfvlgasavhfvail 201
                 ++  + ++++g+ ++ Lal  vlY +G+++y l+  ++ +  +  + w  ++l+a ++  ++ +
  MMETSP1137-20121227|4837_1 659 ALFDVQNQAKGIIFIALALVTVLYGLGIFVYRLEMIKRKRsSGfDSKWPPIILVACICAIIITY 722
                 344567899999**********************8777554557899*********99988765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1020 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       171  (0.041687); expected 82.0 (0.02)
Passed bias filter:                      140  (0.0341297); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.68u 0.18s 00:00:00.86 Elapsed: 00:00:00.74
# Mc/sec: 1819.31
//
Query:       MMETSP1137-20121227|4838_1  [L=360]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (360 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       446  (0.108727); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.13s 00:00:00.43 Elapsed: 00:00:00.43
# Mc/sec: 1105.03
//
Query:       MMETSP1137-20121227|4839_1  [L=808]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   3.8e-136  452.1   0.0     5e-136  451.7   0.0    1.1  1  TIGR00583 mre11: DNA repair protein (mre11)
    3.7e-07   28.0   2.2    8.7e-07   26.8   0.1    2.4  3  TIGR00619 sbcd: exonuclease SbcCD, D subunit
    5.9e-05   20.4   0.4    0.00057   17.2   0.0    2.1  2  TIGR04123 P_estr_lig_assc: metallophosphoesterase, DNA ligase-associated
  ------ inclusion threshold ------
      0.046   11.6   0.3        3.9    5.4   0.0    3.1  2  TIGR00040 yfcE: phosphodiesterase, MJ0936 family


Domain annotation for each model (and alignments):
>> TIGR00583  mre11: DNA repair protein (mre11)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  451.7   0.0  4.9e-139    5e-136       1     404 [.      24     426 ..      24     427 .. 0.94

  Alignments for each domain:
  == domain 1    score: 451.7 bits;  conditional E-value: 4.9e-139
   TIGR00583   1 edtirilvstdnhvGygekdpvrkddsvktfeevlqiakeqdvdmvllgGdlfhenkPsrkslyqvlrslrkaclgdkPielellsdasevfeesaftnvnyedpnlnvaiPvfsihGnhddasGdgrlsaldllqatGlvnyfGkvseadeikvsPillqkGetklalyGlsavrderlvrtfkdnkvkflrPnlkkedwfnllvlhqnh.......aahtstsflpesllpdfldlviwGheheclidpvynps.....kgfevlqPGssvatslvpeealpkhvfilnikGrkfklekiplktvrpfvmkeivldevkslrpllktenkkevskrliekveekieeanaeakakraddevdeeeepplPlirlkvdytadwldyqvenpkrfsnrfvgrvanandvvqfkkkk 404
                 +dt+rilv++d h Gy+e dpvr+dds+ +feev+ +a++ + dmvll+Gd+fh+nkPsr+++ ++l+ +r +clgd+ +++e++sd+ ++f++ ++  vnyedpn nv +Pvf+ihGnhdd++Gdg l++ldll  + lvnyfG+  ++++i++sPill+kG t+lalyGl+ vrderl r+f   +vk  +P+   + wfn+l++hqn+       a   +  ++ e  lp  +dlviwGhehec i +  n+      ++f+v+qPGs+vatslv++ea+pkhv++l+++ ++ kl+ +pl +vrpf ++++ l+  +    l         ++ +++ +ee+  e ++e  a++ ++e   + +  lPlirl+vdyt+    + + np++f++rfv++van  +++ f++k 
  MMETSP1137-20121227|4839_1  24 ADTLRILVASDLHLGYAESDPVRRDDSFIAFEEVFVLANQMKADMVLLAGDIFHDNKPSRRAMQRALEVMRDHCLGDREVQIEVVSDPNTNFHN-KYKTVNYEDPNYNVQLPVFAIHGNHDDPAGDGGLAPLDLLSSANLVNYFGRARDIENIVLSPILLKKGATRLALYGLGHVRDERLSRCFERKTVKVAKPQ-DSGSWFNILAVHQNRhvrgvmgAQGIKKGYIKEAQLPSCMDLVIWGHEHECQIGSGMNALqgsseNQFTVIQPGSTVATSLVEGEAKPKHVALLQVHREQWKLDALPLASVRPFAIRDVCLEAQPDDTDLS-------SEEAMMDFLEEQAIELIEELAARQVSAEESADGRTTLPLIRLRVDYTG----FSTCNPQKFGQRFVSKVANPGEILLFQRKA 426
                 59*******************************************************************************************9.99*************************************************************************************************7.5799**********988886655556779************************99999876777799******************************************************9988776655.......4556788888888888888888888889999999**************....89**********************999886 PP

>> TIGR00619  sbcd: exonuclease SbcCD, D subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.8   0.1   8.5e-10   8.7e-07       1      61 [.      27      87 ..      27     108 .. 0.92
   2 ?   -0.2   0.0      0.15   1.6e+02      76      88 ..     133     145 ..     123     163 .. 0.83
   3 ?   -2.7   0.0      0.89   9.1e+02     141     179 ..     350     388 ..     332     390 .. 0.78

  Alignments for each domain:
  == domain 1    score: 26.8 bits;  conditional E-value: 8.5e-10
   TIGR00619  1 lriLHtsDwHlGktleevSrlaeqkafLddlleilkaeqvDallvAGDvFDkanPpaeaqe 61
                lriL  sD+HlG   +   r  +   + +++  ++ + ++D++l+AGD+F + +P+  a +
  MMETSP1137-20121227|4839_1 27 LRILVASDLHLGYAESDPVRRDDSFIAFEEVFVLANQMKADMVLLAGDIFHDNKPSRRAMQ 87
                79***************99999999999***************************988754 PP

  == domain 2    score: -0.2 bits;  conditional E-value: 0.15
   TIGR00619  76 lpivvisGNHDsa 88 
                 lp+  i GNHD +
  MMETSP1137-20121227|4839_1 133 LPVFAIHGNHDDP 145
                 78999******86 PP

  == domain 3    score: -2.7 bits;  conditional E-value: 0.89
   TIGR00619 141 traeedglelelleellekklrqaleellerldkdlpkI 179
                  +a  d le++++e + e + rq  +e+++  +++lp I
  MMETSP1137-20121227|4839_1 350 EEAMMDFLEEQAIELIEELAARQVSAEESADGRTTLPLI 388
                 456678888889999999999999999999999999988 PP

>> TIGR04123  P_estr_lig_assc: metallophosphoesterase, DNA ligase-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.0   5.6e-07   0.00057      21      96 ..      27      97 ..      14     110 .. 0.88
   2 ?    0.8   0.0     0.058        59      98     110 ..     132     144 ..     112     160 .. 0.82

  Alignments for each domain:
  == domain 1    score: 17.2 bits;  conditional E-value: 5.6e-07
   TIGR04123 21 erlLvvaDlHlgKaaafrkrGialPpkdteatLerLealieelqpeelivlGDlfhdreaaerlelealaelrela 96
                 r+Lv +DlHlg a+     + ++ ++d+   +e++  l ++++++ +++ GD+fhd++ + r+ + al+ +r+++
  MMETSP1137-20121227|4839_1 27 LRILVASDLHLGYAE-----SDPVRRDDSFIAFEEVFVLANQMKADMVLLAGDIFHDNKPSRRAMQRALEVMRDHC 97
                5899********765.....68999999999*******************************99999999888775 PP

  == domain 2    score: 0.8 bits;  conditional E-value: 0.058
   TIGR04123  98 glevvlveGNHDr 110
                 +l v+ ++GNHD 
  MMETSP1137-20121227|4839_1 132 QLPVFAIHGNHDD 144
                 567889******5 PP

>> TIGR00040  yfcE: phosphodiesterase, MJ0936 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.1     0.028        28      15      40 ..      53      91 ..      27     164 .. 0.58
   2 ?    5.4   0.0    0.0038       3.9     106     120 ..     256     270 ..     219     298 .. 0.77

  Alignments for each domain:
  == domain 1    score: 2.6 bits;  conditional E-value: 0.028
   TIGR00040 15 atelpvellkklsevdlvvhaGdlt..............s 40
                a+e++  l +++ ++d+v+ aGd+                
  MMETSP1137-20121227|4839_1 53 AFEEVFVLANQM-KADMVLLAGDIFhdnkpsrramqralE 91
                555566666666.778888887776555444444444330 PP

  == domain 2    score: 5.4 bits;  conditional E-value: 0.0038
   TIGR00040 106 dvDvlifGHtHepva 120
                  +D++i+GH He ++
  MMETSP1137-20121227|4839_1 256 CMDLVIWGHEHECQI 270
                 47*********9776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (808 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       151  (0.0368113); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.55u 0.16s 00:00:00.71 Elapsed: 00:00:00.52
# Mc/sec: 2050.91
//
Query:       MMETSP1137-20121227|4840_1  [L=117]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        1.1    6.6   9.5        1.4    6.3   6.6    1.2  1  TIGR03532 DapD_Ac: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase


Domain annotation for each model (and alignments):
>> TIGR03532  DapD_Ac: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   6.6   0.00033       1.4     171     208 ..      13      50 ..       2      71 .. 0.81

  Alignments for each domain:
  == domain 1    score: 6.3 bits;  conditional E-value: 0.00033
   TIGR03532 171 anavileGvkvGkGavvaaGaiviedvpentvvaGvpa 208
                 + a++     v + avva+ a+vi+ v++ +vva v a
  MMETSP1137-20121227|4840_1  13 SVAAVASVAAVASVAVVASAAVVITAVEPSAVVADVVA 50 
                 55666677789999********************9976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (117 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       355  (0.0865431); expected 82.0 (0.02)
Passed bias filter:                      149  (0.0363237); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.21u 0.17s 00:00:00.38 Elapsed: 00:00:00.28
# Mc/sec: 532.51
//
Query:       MMETSP1137-20121227|4841_1  [L=390]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (390 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       157  (0.038274); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.14s 00:00:00.44 Elapsed: 00:00:00.51
# Mc/sec: 1009.33
//
Query:       MMETSP1137-20121227|4842_1  [L=101]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       217  (0.052901); expected 82.0 (0.02)
Passed bias filter:                      199  (0.0485129); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.19s 00:00:00.36 Elapsed: 00:00:00.34
# Mc/sec: 392.09
//
Query:       MMETSP1137-20121227|4843_1  [L=283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.012   13.2   0.0      0.022   12.4   0.0    1.4  1  TIGR00530 AGP_acyltrn: 1-acylglycerol-3-phosphate O-acyltransferases


Domain annotation for each model (and alignments):
>> TIGR00530  AGP_acyltrn: 1-acylglycerol-3-phosphate O-acyltransferases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   5.3e-06     0.022      20     103 ..      93     171 ..      81     201 .. 0.72

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 5.3e-06
   TIGR00530  20 vvanHqsnlDiltlsaafapplvfiAKkeLkeipflgillllt..gavfidRenkraiasllkaakkllkegravgvFpeGtrskg 103
                 v anH s+ D ++    ++ +++++A+     + +l +++  +    + i R +     ++ +++ +         v+peGtr  +
  MMETSP1137-20121227|4843_1  93 VLANHRSWADFII--DPYQAHCAVVARVAAVAVCLLSSIVGFAcnRIIVIVRGK-----TSRQELMRKTSLHSRFIVYPEGTRRAS 171
                 789*******875..556667999999999999999988754411457777777.....555555555566677889******876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (283 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        92  (0.0224281); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.23u 0.16s 00:00:00.39 Elapsed: 00:00:00.41
# Mc/sec: 911.05
//
Query:       MMETSP1137-20121227|4844_1  [L=389]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (389 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       205  (0.0499756); expected 82.0 (0.02)
Passed bias filter:                      120  (0.029254); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.10s 00:00:00.41 Elapsed: 00:00:00.41
# Mc/sec: 1252.29
//
Query:       MMETSP1137-20121227|4845_1  [L=192]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (192 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       208  (0.050707); expected 82.0 (0.02)
Passed bias filter:                      100  (0.0243784); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.16s 00:00:00.37 Elapsed: 00:00:00.37
# Mc/sec: 684.92
//
Query:       MMETSP1137-20121227|4846_1  [L=799]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.2e-11   41.8   0.0    2.5e-11   40.8   0.0    1.4  1  TIGR00653 GlnA: glutamine synthetase, type I
    3.5e-10   36.8   0.0      5e-09   33.0   0.0    2.1  2  TIGR03105 gln_synth_III: glutamine synthetase, type III


Domain annotation for each model (and alignments):
>> TIGR00653  GlnA: glutamine synthetase, type I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.8   0.0   1.2e-14   2.5e-11     122     280 ..     232     378 ..     213     402 .. 0.81

  Alignments for each domain:
  == domain 1    score: 40.8 bits;  conditional E-value: 1.2e-14
   TIGR00653 122 yfGpEaEFflfdkvefkeasnssflevdseegewnreveegnkgykikkkggYfdvepvDkakdirrelvlaleelglevevsHHEvataqaEidikfdklvkaaDeivlyKyvvknvakkhGktatFmpKplfgdngsGmHvhlslwk.dgenlfagee 280
                 ++G E+EFfl+ k  fk++        d  +     + ++ +++ + + ++ Y+++     a  + +e+ ++  ++g+ +++ H Eva+ q E +  f  ++ + De +++   +  +a+kh ++     Kp+ g ngsG H ++sl   +g nlf+g++
  MMETSP1137-20121227|4846_1 232 NIGLEQEFFLIPKSAFKKR-------PDLXS-----HRHGLRRAAREELCDHYMSPLN-AAALRCMKEMQHECFKMGIPLKTRHREVAPNQYECAPFFGLATAQIDENLVVMELMEEIADKHNLVCLLAEKPFKGINGSGKHNNFSLGTeSGLNLFNGPQ 378
                 5778888888888887755.......22222.....1122234455556666766554.456678899999****************************************************************************8769*******98 PP

>> TIGR03105  gln_synth_III: glutamine synthetase, type III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.0   0.0   2.4e-12     5e-09     115     257 ..     231     381 ..     207     407 .. 0.77
   2 ?    1.2   0.0     0.011        22     289     347 ..     452     509 ..     440     537 .. 0.69

  Alignments for each domain:
  == domain 1    score: 33.0 bits;  conditional E-value: 2.4e-12
   TIGR03105 115 lktGveceffllrreedgk.lsvaD.....kaDklakpcYDqralmr..rydvleeisealnelGwdlYqiDheDanGqfelnfeyaDalttaDrvaffkylvkeiaeeegllatfmPkPfadrtGnGlhlhlslldedgknlfaddadee 257
                  ++G+e effl+ +++  k  ++       ++   ++ c  + +  +      ++e+ +   ++G+ l +   e a  q+e    +  a    D   ++  l++eia+++ l++ +  kPf+   G+G h ++sl  e g nlf+ ++ ++
  MMETSP1137-20121227|4846_1 231 PNIGLEQEFFLIPKSAFKKrPDLXShrhglRRAAREELCDHYMSPLNaaALRCMKEMQHECFKMGIPLKTRHREVAPNQYECAPFFGLATAQIDENLVVMELMEEIADKHNLVCLLAEKPFKGINGSGKHNNFSLGTESGLNLFNGPQLQK 381
                 678899999998776432212222200011333344445444443331145689999999999****999999***********************************************************************9875554 PP

  == domain 2    score: 1.2 bits;  conditional E-value: 0.011
   TIGR03105 289 sYkRlvakrtlsgatWaPalisyggnnRthmvRiP.dagRlelRlaDgaanpYlvsaavl 347
                 sY  +++k  l   + a  ++   + nRt     P +++R+e+R   ++ n  +v++++ 
  MMETSP1137-20121227|4846_1 452 SYEPIKRKVELGVESVAAFTVPAEDRNRTSP--FPyGGHRFEFRAVGSSQNVSMVNTVLC 509
                 6666666666666666666666666667665..566799************999887542 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (799 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       109  (0.0265724); expected 82.0 (0.02)
Passed bias filter:                      104  (0.0253535); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.22s 00:00:00.70 Elapsed: 00:00:01.37
# Mc/sec: 769.78
//
Query:       MMETSP1137-20121227|4847_1  [L=60]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        40  (0.00975134); expected 82.0 (0.02)
Passed bias filter:                       39  (0.00950756); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.19s 00:00:00.27 Elapsed: 00:00:00.46
# Mc/sec: 172.16
//
Query:       MMETSP1137-20121227|4848_1  [L=540]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-27   93.8   0.0      2e-27   93.3   0.0    1.1  1  TIGR03903 TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
    9.3e-11   39.4   0.1    1.7e-10   38.6   0.1    1.3  1  TIGR03724 arch_bud32: Kae1-associated kinase Bud32
     0.0022   14.4   0.1     0.0056   13.1   0.0    1.5  2  TIGR01982 UbiB: 2-polyprenylphenol 6-hydroxylase


Domain annotation for each model (and alignments):
>> TIGR03903  TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   93.3   0.0   1.4e-30     2e-27       2     184 ..      48     220 ..      47     234 .. 0.90

  Alignments for each domain:
  == domain 1    score: 93.3 bits;  conditional E-value: 1.4e-30
   TIGR03903   2 tghkvaikllRedaaeeerlvaRFrReialCarLshPnivaLlDsGeaedgllFavFeyveGrtlrevLaadGaLpaaetgrLmlqvLDalaaahdaGvvhRDLkPqnimvsaadveshakvLDFGigaLlpgvedadeatltrttevlGsPaYaaPeqLRgepv.taksDlYaWGLivleCLt 184
                 t + va+k+l  d+ ++   + R   eia+ +r++h n+ +Ll+  e  d +++ + ey+ G  l + +  +G L   e +rL +q++ a+   h++ v+hRDLkP+n+++  +++    kv+DFG+ga+l+  ++     lt      GsP+YaaPe L g      + D+++ G+ +   L 
  MMETSP1137-20121227|4848_1  48 TRESVAVKVLERDKITDDAARERLVNEIAILNRVHHANLLQLLEVIEDVD-RIYLITEYIGGGELFNYIVEKGRLEESEAARLFAQMVAAVDSCHRNLVIHRDLKPENVLLDPSGD---IKVIDFGLGAVLSSSDE----LLTV---ACGSPHYAAPEMLLGGGYyGQRVDMWSLGVCLYAMLC 220
                 8899***************************************9988777.************************************************************88886...79***********9999....3444...57*********99876541566899888887666555 PP

>> TIGR03724  arch_bud32: Kae1-associated kinase Bud32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.6   0.1   1.2e-13   1.7e-10      35     138 ..      62     173 ..      53     184 .. 0.81

  Alignments for each domain:
  == domain 1    score: 38.6 bits;  conditional E-value: 1.2e-13
   TIGR03724  35 lDeklrkeRtrkEarllseakkagvntPvvydvdpeekkivmeyiegkklkdlleekel.......ellkevGelvgklHkagivhgDlttsNiivk.ddklyliDfGLgkk 138
                 + +   +eR ++E+ +l+++++a +   + +  d ++  ++ eyi g +l +++ ek         +l+ ++  +v  +H++ ++h Dl ++N++++ ++++ +iDfGLg +
  MMETSP1137-20121227|4848_1  62 ITDDAARERLVNEIAILNRVHHANLLQLLEVIEDVDRIYLITEYIGGGELFNYIVEKGRleeseaaRLFAQMVAAVDSCHRNLVIHRDLKPENVLLDpSGDIKVIDFGLGAV 173
                 55556789***************98876666667788899*****9988876666655558897778888888889999*****************6599**********87 PP

>> TIGR01982  UbiB: 2-polyprenylphenol 6-hydroxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0      0.12   1.6e+02     139     191 ..      48      98 ..      39     105 .. 0.65
   2 !   13.1   0.0   4.1e-06    0.0056     234     310 ..     101     178 ..      91     184 .. 0.79

  Alignments for each domain:
  == domain 1    score: -1.6 bits;  conditional E-value: 0.12
   TIGR01982 139 egkeVavKvl.RPgiekkieadikllellaklvekllpeakrlrptevvkefek 191
                 + ++VavKvl R  i++  +++ +l++ +a ++++++ +a+ l+  ev++++++
  MMETSP1137-20121227|4848_1  48 TRESVAVKVLeRDKITDDAARE-RLVNEIA-ILNRVH-HANLLQLLEVIEDVDR 98 
                 4588999997566677666655.5556665.334443.5666777777777665 PP

  == domain 2    score: 13.1 bits;  conditional E-value: 4.1e-06
   TIGR01982 234 ltlewidgipvsdleklkeaG.ldlkalaenlvesf..lkqvlrdgfFHaDlHpGNilvakdgkiialDfGivgrlseee 310
                 l++e+i g ++ +   + e+G l+  + a+ +++++  +    r+ + H Dl p N+l++  g i ++DfG+ + ls+++
  MMETSP1137-20121227|4848_1 101 LITEYIGGGELFNY--IVEKGrLEESEAARLFAQMVaaVDSCHRNLVIHRDLKPENVLLDPSGDIKVIDFGLGAVLSSSD 178
                 67788888877654..445554888888998888883345789999*************************988888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (540 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       132  (0.0321794); expected 82.0 (0.02)
Passed bias filter:                      119  (0.0290102); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.38u 0.23s 00:00:00.61 Elapsed: 00:00:00.75
# Mc/sec: 950.32
//
Query:       MMETSP1137-20121227|4849_1  [L=201]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (201 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        97  (0.023647); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.21s 00:00:00.35 Elapsed: 00:00:00.38
# Mc/sec: 698.15
//
Query:       MMETSP1137-20121227|4850_1  [L=55]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        44  (0.0107265); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.15s 00:00:00.26 Elapsed: 00:00:00.33
# Mc/sec: 219.98
//
Query:       MMETSP1137-20121227|4851_1  [L=187]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.5e-28   96.5   3.3    3.7e-28   95.9   2.3    1.3  1  TIGR01032 rplT_bact: ribosomal protein L20


Domain annotation for each model (and alignments):
>> TIGR01032  rplT_bact: ribosomal protein L20
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.9   2.3     9e-32   3.7e-28      12     113 ..       2     103 ..       1     104 [. 0.97

  Alignments for each domain:
  == domain 1    score: 95.9 bits;  conditional E-value: 9e-32
   TIGR01032  12 krrkkiLkqakGfygarkksykkakqavikalayayrdRkqrkrdfRsLWiaRinaalreeglsYsrlingLkkanieinRkvLselaiedpeafkevveka 113
                 +rr ki k+akG++g++k+++k ++ +v+k+l++ayr R+ +kr+ R+L++  i+a + e+ ++Ys li+gL+ + + ++Rk+Ls+la ++p +f+++ + a
  MMETSP1137-20121227|4851_1   2 TRRDKIFKLAKGYFGRAKNCIKISRRRVEKGLQHAYRSRRLKKRQARELFVLQISAGAVEQRMNYSTLIHGLRLSRVGVDRKILSQLAQNEPYSFRAICDLA 103
                 69**********************************************************************************************998766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (187 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       102  (0.0248659); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.19u 0.16s 00:00:00.35 Elapsed: 00:00:00.42
# Mc/sec: 587.67
//
Query:       MMETSP1137-20121227|4852_1  [L=91]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (91 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        48  (0.0117016); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.26
# Mc/sec: 461.96
//
Query:       MMETSP1137-20121227|4853_1  [L=570]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (570 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        99  (0.0241346); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.16s 00:00:00.56 Elapsed: 00:00:00.56
# Mc/sec: 1343.46
//
Query:       MMETSP1137-20121227|4854_1  [L=173]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (173 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        78  (0.0190151); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.14s 00:00:00.30 Elapsed: 00:00:00.34
# Mc/sec: 671.59
//
Query:       MMETSP1137-20121227|4855_1  [L=284]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (284 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        30  (0.00731351); expected 82.0 (0.02)
Passed bias filter:                       27  (0.00658216); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.14s 00:00:00.35 Elapsed: 00:00:00.35
# Mc/sec: 1071.00
//
Query:       MMETSP1137-20121227|4856_1  [L=175]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (175 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        49  (0.0119454); expected 82.0 (0.02)
Passed bias filter:                       40  (0.00975134); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.15s 00:00:00.32 Elapsed: 00:00:00.34
# Mc/sec: 679.36
//
Query:       MMETSP1137-20121227|4857_1  [L=1311]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.3e-56  187.9   0.4    3.5e-28   96.2   0.0    5.2  5  TIGR00376 TIGR00376: putative DNA helicase
     0.0001   18.9   0.0    0.00036   17.0   0.0    1.8  2  TIGR01447 recD: exodeoxyribonuclease V, alpha subunit
    0.00012   19.2   0.0    0.00026   18.2   0.0    1.5  1  TIGR01420 pilT_fam: twitching motility protein
    0.00027   17.6   0.0    0.00049   16.7   0.0    1.3  1  TIGR02533 type_II_gspE: general secretory pathway protein E
     0.0015   16.0   0.0     0.0033   14.8   0.0    1.5  1  TIGR03420 DnaA_homol_Hda: DnaA regulatory inactivator Hda
      0.004   13.6   0.0     0.0074   12.8   0.0    1.3  1  TIGR02538 type_IV_pilB: type IV-A pilus assembly ATPase PilB
     0.0051   14.2   0.0       0.01   13.3   0.0    1.4  1  TIGR02982 heterocyst_DevA: ABC exporter ATP-binding subunit, DevA family
  ------ inclusion threshold ------
      0.013   12.8   0.0      0.024   11.9   0.0    1.3  1  TIGR03015 pepcterm_ATPase: putative secretion ATPase, PEP-CTERM locus subfamily
      0.037    9.8   0.1       0.71    5.5   0.0    2.4  3  TIGR01448 recD_rel: helicase, RecD/TraA family
      0.045   10.6   0.1      0.076    9.9   0.0    1.2  1  TIGR00635 ruvB: Holliday junction DNA helicase RuvB
        0.2    7.6   0.1       0.29    7.1   0.0    1.1  1  TIGR00929 VirB4_CagE: type IV secretion/conjugal transfer ATPase, VirB4 family


Domain annotation for each model (and alignments):
>> TIGR00376  TIGR00376: putative DNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.1   0.0   0.00023     0.085     172     195 ..     608     631 ..     506     639 .. 0.73
   2 !   14.7   0.0   4.5e-06    0.0017     200     285 ..     693     794 ..     678     844 .. 0.66
   3 !   96.2   0.0   9.5e-31   3.5e-28     336     518 ..     879    1070 ..     869    1080 .. 0.75
   4 !    3.8   0.0    0.0088       3.3     531     550 ..    1118    1137 ..    1115    1146 .. 0.84
   5 !   56.7   0.2   8.7e-19   3.2e-16     556     614 ..    1182    1239 ..    1175    1253 .. 0.93

  Alignments for each domain:
  == domain 1    score: 9.1 bits;  conditional E-value: 0.00023
   TIGR00376 172 sskdlaliHGPpGtGktrtlvEli 195
                  ++ ++l+ GPpGtGkt+ l  l+
  MMETSP1137-20121227|4857_1 608 RHEGFVLVQGPPGTGKTTLLLALL 631
                 45689************9887665 PP

  == domain 2    score: 14.7 bits;  conditional E-value: 4.5e-06
   TIGR00376 200 kkgkrvLvtaesniavDnllErlakl............dlkivRlG.HPaRllkslkrhsL.dalienhek..yqkvkdirekidelieerekklkpskqkr 285
                 k+  r+Lv+a+sn+avD+ll rl  +            +  +vR+G H a   ++    ++ + +++n  k  + +  +++ +i+e+  ++    k  +++r
  MMETSP1137-20121227|4857_1 693 KRRGRILVCAQSNAAVDELLSRLLAQrrpfrdeygkpyQPDVVRIGrHAAASVDDCTISTVaEKKLANAWKrgAASRDALKSEINEVLDKKTNAAKCLPRLR 794
                 4555*****************997654555555554445567777744333333333333303334443331133345567777777766666666666655 PP

  == domain 3    score: 96.2 bits;  conditional E-value: 9.5e-31
   TIGR00376  336 erivdeileesdvvlstnssaaleilk.eFDvvviDEasqAlepsvliPlvkarkl.ilAGDhkqLPPtvlsedaeeL..ektLferlik..kyper...sklLnvqYRmnekimefpskefYngklkAdesvanillrdlvkeeate...veedle.dkiPllfidtsglelleakekdstskynegEvelvkei 518 
                  +++ +++l+e+++v  t ssaa e+l+  F++vv DEa+qA e   liPl  + +l il GD +qLP tvls  a+eL    +Lferl +  +  +r    ++L+vqYRm+++i  fps++fY + l+  esv++ + r    +   +   ++e++e    P + ++    ++    e+  +sk n+ E++     
  MMETSP1137-20121227|4857_1  879 RKLEEHVLQEAHIVFCTMSSAAFEKLDgGFETVVFDEAAQASELATLIPLRYGARLaILVGDPQQLPATVLSMRAKELgyASSLFERLQRleRQQRRdwqPHMLQVQYRMHPAIRAFPSRHFYGNALRDSESVQRAMRRAAGSVGGPPgvlSTENVEsRVAPYVIFNLRDSKQ----EQAHKSKLNKPEADFCCRL 1070
                  56778899*******************9**********************8766544****************9999844589*****75114444477789*******************************9876554444333323222222220234555555554444....5555666666666665555 PP

  == domain 4    score: 3.8 bits;  conditional E-value: 0.0088
   TIGR00376  531 eigvisPYdaqvdllrklle 550 
                  +i+v++PY+ qv  ++++  
  MMETSP1137-20121227|4857_1 1118 KIAVLTPYNGQVAEIKRSAR 1137
                  69**************9865 PP

  == domain 5    score: 56.7 bits;  conditional E-value: 8.7e-19
   TIGR00376  556 iEvssvDGFqGREkeviilslvRsnrkgevGFLkdlRRlnvaltRarRklivigdsevl 614 
                  + vs vD FqGRE +++i s vRs+  + +GF+kd  R+nvaltRa   l v+gd   l
  MMETSP1137-20121227|4857_1 1182 VSVSNVDAFQGRESDIVIYSAVRSEG-RGIGFVKDRQRMNVALTRASHALFVVGDXARL 1239
                  789*********************98.88**************************8766 PP

>> TIGR01447  recD: exodeoxyribonuclease V, alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.0   9.6e-07   0.00036     162     193 ..     609     640 ..     528     648 .. 0.77
   2 ?   -1.7   0.0      0.47   1.8e+02     286     303 ..     928     946 ..     911     949 .. 0.82

  Alignments for each domain:
  == domain 1    score: 17.0 bits;  conditional E-value: 9.6e-07
   TIGR01447 162 ksnfslitGGPGTGKTttvarlllalikqska 193
                 ++ f+l+ G PGTGKTt+   ll  l + + +
  MMETSP1137-20121227|4857_1 609 HEGFVLVQGPPGTGKTTLLLALLNVLHNAQTQ 640
                 357********************999877665 PP

  == domain 2    score: -1.7 bits;  conditional E-value: 0.47
   TIGR01447 286 lkketkL.IllGDknQLas 303
                 l+  ++L Il+GD  QL+ 
  MMETSP1137-20121227|4857_1 928 LRYGARLaILVGDPQQLPA 946
                 556677669********95 PP

>> TIGR01420  pilT_fam: twitching motility protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.0   6.9e-07   0.00026     112     150 ..     600     638 ..     590     648 .. 0.82

  Alignments for each domain:
  == domain 1    score: 18.2 bits;  conditional E-value: 6.9e-07
   TIGR01420 112 evlkelaekkrGlilvtGptGsGKsttlAslidyinkek 150
                 +  +++ ++++G++lv Gp G GK+t l +l++ + + +
  MMETSP1137-20121227|4857_1 600 DLAEKVHQRHEGFVLVQGPPGTGKTTLLLALLNVLHNAQ 638
                 56688999************************9875443 PP

>> TIGR02533  type_II_gspE: general secretory pathway protein E
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0   1.3e-06   0.00049     236     272 ..     603     639 ..     576     655 .. 0.80

  Alignments for each domain:
  == domain 1    score: 16.7 bits;  conditional E-value: 1.3e-06
   TIGR02533 236 eklikrphGiiLvtGPtGsGktttLyaalsklnteer 272
                 ek+ +r  G +Lv GP G+Gktt L a l+ l+++++
  MMETSP1137-20121227|4857_1 603 EKVHQRHEGFVLVQGPPGTGKTTLLLALLNVLHNAQT 639
                 56778889***********************987765 PP

>> TIGR03420  DnaA_homol_Hda: DnaA regulatory inactivator Hda
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   8.9e-06    0.0033      22      66 ..     594     638 ..     587     645 .. 0.87

  Alignments for each domain:
  == domain 1    score: 14.8 bits;  conditional E-value: 8.9e-06
   TIGR03420  22 naellaalrelaeakaerllylwGesgsGksHLLqAacaaaeeag 66 
                 +  ll+ l e +++++e ++ + G++g+Gk+ LL A+ + +++a+
  MMETSP1137-20121227|4857_1 594 QGRLLTDLAEKVHQRHEGFVLVQGPPGTGKTTLLLALLNVLHNAQ 638
                 567899999999************************998877665 PP

>> TIGR02538  type_IV_pilB: type IV-A pilus assembly ATPase PilB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.8   0.0     2e-05    0.0074     312     344 ..     606     638 ..     585     648 .. 0.84

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 2e-05
   TIGR02538 312 lkkPqGlvLvtGPtGsGktvslYtaLniLnkee 344
                  ++  G+vLv GP G Gkt+ l + Ln+L + +
  MMETSP1137-20121227|4857_1 606 HQRHEGFVLVQGPPGTGKTTLLLALLNVLHNAQ 638
                 46789***********************98765 PP

>> TIGR02982  heterocyst_DevA: ABC exporter ATP-binding subunit, DevA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   0.0   2.7e-05      0.01       6      59 ..     583     639 ..     579     652 .. 0.78

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 2.7e-05
   TIGR02982   6 elnhyygkgelrkqvlfdinleiep..geiviltGpsGsGkttl.ltligglrsvqe 59 
                 +l    g ++ + ++l d+  ++++     v+++Gp G+Gkttl l+l+  l ++q 
  MMETSP1137-20121227|4857_1 583 TLVKANGLDKSQGRLLTDLAEKVHQrhEGFVLVQGPPGTGKTTLlLALLNVLHNAQT 639
                 555566777888889999888886521569*************73689999999885 PP

>> TIGR03015  pepcterm_ATPase: putative secretion ATPase, PEP-CTERM locus subfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   6.3e-05     0.024      40      69 ..     607     636 ..     591     644 .. 0.81

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 6.3e-05
   TIGR03015  40 sereGfilitGevGaGkttlvrnllkklea 69 
                 +++eGf+l+ G  G+Gkttl+  ll+ l++
  MMETSP1137-20121227|4857_1 607 QRHEGFVLVQGPPGTGKTTLLLALLNVLHN 636
                 3469******************99998765 PP

>> TIGR01448  recD_rel: helicase, RecD/TraA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   0.0    0.0019      0.71     313     365 ..     581     637 ..     566     649 .. 0.66
   2 ?   -2.0   0.0      0.35   1.3e+02     443     457 ..     931     946 ..     913     966 .. 0.83
   3 ?    0.7   0.0     0.056        21     655     701 ..    1189    1239 ..    1182    1253 .. 0.79

  Alignments for each domain:
  == domain 1    score: 5.5 bits;  conditional E-value: 0.0019
   TIGR01448 313 ilevekklelelseeqkealktaiq...dk...vviltGGPGtGKtTvtkaiielaeel 365
                 i + +k++  +l+++q   l+++++   ++    v++ G PGtGKtT+  a++++  + 
  MMETSP1137-20121227|4857_1 581 IETLVKAN--GLDKSQGRLLTDLAEkvhQRhegFVLVQGPPGTGKTTLLLALLNVLHNA 637
                 55555444..355666666655543111112225788999********99999887665 PP

  == domain 2    score: -2.0 bits;  conditional E-value: 0.35
   TIGR01448 443 darl.llvGDadqLPs 457
                 +arl +lvGD +qLP+
  MMETSP1137-20121227|4857_1 931 GARLaILVGDPQQLPA 946
                 5666599********7 PP

  == domain 3    score: 0.7 bits;  conditional E-value: 0.056
   TIGR01448  655 ksqGsefsvVilpiveahlrmL....eRnllYTalTRakkklvlvGskeAl 701 
                    qG e  +Vi   v++  r +    +R+ +  alTRa + l++vG+   l
  MMETSP1137-20121227|4857_1 1189 AFQGRESDIVIYSAVRSEGRGIgfvkDRQRMNVALTRASHALFVVGDXARL 1239
                  579999999999999998885433338999****************98655 PP

>> TIGR00635  ruvB: Holliday junction DNA helicase RuvB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.0    0.0002     0.076      22      48 ..     602     628 ..     592     640 .. 0.81

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 0.0002
   TIGR00635  22 aakkrkealdhvllyGPPGlGkttlak 48 
                 a k ++ +   vl+ GPPG Gkttl  
  MMETSP1137-20121227|4857_1 602 AEKVHQRHEGFVLVQGPPGTGKTTLLL 628
                 55677888899*************954 PP

>> TIGR00929  VirB4_CagE: type IV secretion/conjugal transfer ATPase, VirB4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   0.0   0.00077      0.29     429     462 ..     606     635 ..     602     643 .. 0.84

  Alignments for each domain:
  == domain 1    score: 7.1 bits;  conditional E-value: 0.00077
   TIGR00929 429 HvrdakevlGhTlIfGptgsGKTvllnfllaqlq 462
                 H+r      G +l+ Gp g+GKT+ll  ll+ l 
  MMETSP1137-20121227|4857_1 606 HQRH----EGFVLVQGPPGTGKTTLLLALLNVLH 635
                 6666....89****************99988665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1311 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       244  (0.0594832); expected 82.0 (0.02)
Passed bias filter:                      190  (0.0463189); expected 82.0 (0.02)
Passed Vit filter:                        76  (0.0185275); expected 4.1 (0.001)
Passed Fwd filter:                        11  (0.00268162); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 1.27u 0.18s 00:00:01.45 Elapsed: 00:00:01.09
# Mc/sec: 1587.50
//
Query:       MMETSP1137-20121227|4858_1  [L=886]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (886 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       141  (0.0343735); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.56u 0.17s 00:00:00.73 Elapsed: 00:00:00.83
# Mc/sec: 1408.94
//
Query:       MMETSP1137-20121227|4859_1  [L=198]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (198 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        87  (0.0212092); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.15s 00:00:00.35 Elapsed: 00:00:00.24
# Mc/sec: 1088.91
//
Query:       MMETSP1137-20121227|4860_1  [L=160]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.3e-18   64.5   0.0    2.7e-18   64.3   0.0    1.1  1  TIGR01575 rimI: ribosomal-protein-alanine acetyltransferase
      5e-07   27.1   0.0      6e-07   26.9   0.0    1.1  1  TIGR03448 mycothiol_MshD: mycothiol synthase
    1.8e-06   25.9   0.0    4.5e-06   24.7   0.0    1.5  2  TIGR03585 PseH: pseudaminic acid biosynthesis N-acetyl transferase


Domain annotation for each model (and alignments):
>> TIGR01575  rimI: ribosomal-protein-alanine acetyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.3   0.0     2e-21   2.7e-18       4     131 ..       5     142 ..       2     143 .. 0.86

  Alignments for each domain:
  == domain 1    score: 64.3 bits;  conditional E-value: 2e-21
   TIGR01575   4 evleiekeafavsp.wteaafaeela.sekaeyl.laeeggkvvGyivvqivldeae.....ilniavkpeyqgqGiGraLlkelikeakerg.vkeifLEVResNvaAqaLYkklgfkeialrknYYkdse.edAlv 131
                 +v ++ k  fav+p +++++f ++la s+ ++y  la+  + +vG i++++  +e+      i++i+v   y++ GiG++Ll+ +++ + ++  +++++L V ++N+ A+ +Yk++gf   ++ k+YYk  e  dA++
  MMETSP1137-20121227|4860_1   5 NVEQLRKLNFAVFPvRYNDKFYTDLAsSKVQDYThLAYFSDILVGAIAGRVEPQEGSkfkiyIMTIGVLAPYRRLGIGTMLLQLVLDACSKQPdCEQVYLHVQVNNDDAIDFYKRFGFTVGEVVKDYYKRIEpPDAVI 142
                 67777888888866378999*****988888886356778889*****99999998555555999*******************9999988767***********************************999889987 PP

>> TIGR03448  mycothiol_MshD: mycothiol synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.9   0.0   4.4e-10     6e-07     231     290 ..      65     127 ..      40     131 .. 0.85

  Alignments for each domain:
  == domain 1    score: 26.9 bits;  conditional E-value: 4.4e-10
   TIGR03448 231 vYv..vgvdpaaqgrGLGkaLtliGlkhleer.glravlLYveadneaAvrtYekLgFtvaev 290
                 +Y+  +gv   +++ G+G +L ++ l   +++   ++v L v+ +n+ A+  Y++ gFtv ev
  MMETSP1137-20121227|4860_1  65 IYImtIGVLAPYRRLGIGTMLLQLVLDACSKQpDCEQVYLHVQVNNDDAIDFYKRFGFTVGEV 127
                 5652279999******************999956789**********************9876 PP

>> TIGR03585  PseH: pseudaminic acid biosynthesis N-acetyl transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0      0.54   7.4e+02      18      44 ..      20      45 ..      10      47 .. 0.69
   2 !   24.7   0.0   3.3e-09   4.5e-06      86     145 ..      75     134 ..      62     143 .. 0.89

  Alignments for each domain:
  == domain 1    score: -2.0 bits;  conditional E-value: 0.54
   TIGR03585 18 RNhpevrafMysdklIseeeHlqfiek 44
                R +++    + s+k ++  +Hl+++ +
  MMETSP1137-20121227|4860_1 20 RYNDKFYTDLASSK-VQDYTHLAYFSD 45
                55555555566666.888899988875 PP

  == domain 2    score: 24.7 bits;  conditional E-value: 3.3e-09
   TIGR03585  86 pkvkkgkGsvleealleyafeklklkkLkleVlesNekalklyekfgfelegvlkqfiak 145
                 p+ + g+G +l++ +l+   ++ +++++ l+V  +N  a+ +y++fgf++ +v+k++  +
  MMETSP1137-20121227|4860_1  75 PYRRLGIGTMLLQLVLDACSKQPDCEQVYLHVQVNNDDAIDFYKRFGFTVGEVVKDYYKR 134
                 66678**************************************************99766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (160 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       115  (0.0280351); expected 82.0 (0.02)
Passed bias filter:                      115  (0.0280351); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.19u 0.16s 00:00:00.35 Elapsed: 00:00:00.38
# Mc/sec: 555.74
//
Query:       MMETSP1137-20121227|4861_1  [L=494]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   1.9e-150  499.7   0.5   2.3e-150  499.4   0.3    1.1  1  TIGR01241 FtsH_fam: ATP-dependent metallopeptidase HflB
    2.9e-73  244.9   0.6    3.9e-73  244.5   0.4    1.1  1  TIGR01242 26Sp45: 26S proteasome subunit P45 family
    1.1e-68  230.1   0.3    1.5e-68  229.6   0.2    1.1  1  TIGR01243 CDC48: AAA family ATPase, CDC48 subfamily
    2.6e-36  123.2   0.2      4e-36  122.6   0.2    1.2  1  TIGR03689 pup_AAA: proteasome ATPase
    9.9e-06   22.6   0.0    1.5e-05   22.0   0.0    1.2  1  TIGR00382 clpX: ATP-dependent Clp protease, ATP-binding subunit ClpX
    2.2e-05   21.4   0.6    0.00031   17.6   0.1    2.1  2  TIGR00390 hslU: ATP-dependent protease HslVU, ATPase subunit
    6.7e-05   19.4   0.0     0.0001   18.9   0.0    1.2  1  TIGR03922 T7SS_EccA: type VII secretion AAA-ATPase EccA
    0.00024   18.1   0.0    0.00045   17.2   0.0    1.3  1  TIGR00635 ruvB: Holliday junction DNA helicase RuvB
    0.00054   16.1   0.1      0.041    9.9   0.0    2.1  2  TIGR02639 ClpA: ATP-dependent Clp protease ATP-binding subunit ClpA
     0.0012   15.2   0.2     0.0024   14.2   0.2    1.3  1  TIGR00763 lon: ATP-dependent protease La
      0.002   15.0   0.0     0.0033   14.3   0.0    1.3  1  TIGR02881 spore_V_K: stage V sporulation protein K
     0.0025   14.3   0.1      0.011   12.2   0.0    1.8  2  TIGR02902 spore_lonB: ATP-dependent protease LonB
     0.0032   14.8   0.0     0.0094   13.3   0.0    1.6  2  TIGR02640 gas_vesic_GvpN: gas vesicle protein GvpN
     0.0039   15.1   0.1      0.007   14.2   0.1    1.3  1  TIGR02173 cyt_kin_arch: putative cytidylate kinase
  ------ inclusion threshold ------
      0.012   12.3   0.0      0.039   10.6   0.0    1.8  2  TIGR02928 TIGR02928: orc1/cdc6 family replication initiation protein
      0.038   10.4   0.0      0.063    9.6   0.0    1.3  1  TIGR00368 TIGR00368: Mg chelatase-like protein


Domain annotation for each model (and alignments):
>> TIGR01241  FtsH_fam: ATP-dependent metallopeptidase HflB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  499.4   0.3    9e-153  2.3e-150       3     339 ..     152     494 .]     150     494 .] 0.96

  Alignments for each domain:
  == domain 1    score: 499.4 bits;  conditional E-value: 9e-153
   TIGR01241   3 levllsllplilllvglfllflrq..akgaggsrifslgkskaklleeekvkvtfkdvaGideakeelveivdfLknpkkftklGakiPkGvllvGpPGtGktLlakavaGeagvpffsisGsdfvemfvGvGasrvrDlfeqakknaPciifiDeiDavGrkrgag....lgggndereqtLnqlLvemDGfetnegvivlaatnrpdvLDkaLlrPGrfDrqvvvdkPdlkgreeilkvhakkvklaeevdlkkvarrtpGfsGadlanlvneaallaarknkkevtlkeleeavdrviaGlekksrvisekekklvayheaGhalvgllvkeadkvkkvt 339
                 ++vl +l + +l++ glf+l +r+  + g gg + ++lgksk+k+++e ++ vtf+dvaG+d  k el+e+v+fLknp kf++lGakiP+Gv++ GpPGtGktLla+avaGeagvpf+s sGs+fvemfvGvGa+r+r lf +akknaPci+fiDeiDavGr+r+ g    +gggndereqtLnq+L+emDG  +n gviv+aatnr+dvLD+aLlrPGrfDr+v vd+Pd  gr +ilkvh++ + +a++v+l+ va+rt G sGa lanl+neaa++aar +kke+t  e +  +dr ++G +k +    + +++lvayheaGha++gl++++ d+v+kvt
  MMETSP1137-20121227|4861_1 152 AGVLANLAFPLLIIGGLFFLQRRNggMGGPGGMNPLDLGKSKSKIQMEPQTGVTFEDVAGCDASKFELTEVVEFLKNPAKFSALGAKIPRGVIMEGPPGTGKTLLARAVAGEAGVPFISASGSEFVEMFVGVGAARIRSLFSEAKKNAPCIVFIDEIDAVGRQRAGGnrggMGGGNDEREQTLNQILTEMDGXXGNAGVIVIAATNRADVLDSALLRPGRFDRRVPVDLPDKDGRLAILKVHSRGKPIADDVQLDIVAKRTXGXSGASLANLMNEAAIVAARXDKKEITYXEXDYXIDRXTVGXQKTTGXTFPXRQRLVAYHEAGHAVMGLVTPDYDMVTKVT 494
                 567778877899999**9999988444555666799********************************************************************************************************************************8644457***************************************************************************************************************************************************************************8 PP

>> TIGR01242  26Sp45: 26S proteasome subunit P45 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  244.5   0.4   1.5e-75   3.9e-73     112     359 ..     197     447 ..     186     452 .. 0.94

  Alignments for each domain:
  == domain 1    score: 244.5 bits;  conditional E-value: 1.5e-75
   TIGR01242 112 eveerpevsyediGGlekqlreireavelplkkpelfeevGieppkGvllyGppGtGktllakavaeetnatfirvvgselvkkyiGeGarlvrevfklakekapsiifideidaiaakrldss....tsGdrevqrtllqllaeldGfdprgnvkviaatnrldildpallrpGrfdrlievplpdleGrleilkihtrkmklaedvdleelaklteGasGadlkaivteaGmfaireerdkvtmedflka 359
                 ++e +  v++ed+ G +    e+ e+ve+ lk+p  f  +G + p+Gv++ GppGtGktlla+ava e+   fi   gse+v+ ++G Ga  +r +f  ak+ ap+i+fideida++ +r   +     +G+ e ++tl q+l+e+dG      v viaatnr d+ld allrpGrfdr + v lpd++Grl ilk+h+r   +a+dv+l+ +ak t G sGa l  ++ ea + a r +++++t  +    
  MMETSP1137-20121227|4861_1 197 QMEPQTGVTFEDVAGCDASKFELTEVVEF-LKNPAKFSALGAKIPRGVIMEGPPGTGKTLLARAVAGEAGVPFISASGSEFVEMFVGVGAARIRSLFSEAKKNAPCIVFIDEIDAVGRQRAGGNrggmGGGNDEREQTLNQILTEMDGXXGNAGVIVIAATNRADVLDSALLRPGRFDRRVPVDLPDKDGRLAILKVHSRGKPIADDVQLDIVAKRTXGXSGASLANLMNEAAIVAARXDKKEITYXEXDYX 447
                 5667788********************97.9*****************************************************************************************9765112156899****************************************************************************************************************8876555 PP

>> TIGR01243  CDC48: AAA family ATPase, CDC48 subfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  229.6   0.2   5.7e-71   1.5e-68     449     676 ..     203     435 ..     194     454 .. 0.92

  Alignments for each domain:
  == domain 1    score: 229.6 bits;  conditional E-value: 5.7e-71
   TIGR01243 449 nvkwediggleevkqelreavewplkakevfeklgirppkgvllfgppgtgktllakavatesganfiavrgpeilskwvgesekaireifrkarqaapaiifldeidaiapar......gadlseavtdrivnqllteldgleensdvvviaatnrpdildpallrpgrldrlilvpapdeearleifkihtrslplaedvdleelakktegytgadieavvreaalaalres 676
                  v +ed+ g +  k el e ve+ lk++  f  lg + p+gv++ gppgtgktlla+ava e+g  fi+  g e +  +vg    +ir +f  a++ ap+i+f+deida+  +r      g   ++   ++ +nq+lte+dg   n +v+viaatnr d+ld allrpgr+dr + v  pd++ rl i+k+h+r  p+a+dv+l+ +ak+t g +ga ++ ++ eaa+ a r  
  MMETSP1137-20121227|4861_1 203 GVTFEDVAGCDASKFELTEVVEF-LKNPAKFSALGAKIPRGVIMEGPPGTGKTLLARAVAGEAGVPFISASGSEFVEMFVGVGAARIRSLFSEAKKNAPCIVFIDEIDAVGRQRaggnrgGMGGGNDEREQTLNQILTEMDGXXGNAGVIVIAATNRADVLDSALLRPGRFDRRVPVDLPDKDGRLAILKVHSRGKPIADDVQLDIVAKRTXGXSGASLANLMNEAAIVAARXD 435
                 5899******************8.9*************************************************************************************987743222222334557789**************************************************************************************************99954 PP

>> TIGR03689  pup_AAA: proteasome ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  122.6   0.2   1.6e-38     4e-36     170     387 ..     195     402 ..     189     446 .. 0.84

  Alignments for each domain:
  == domain 1    score: 122.6 bits;  conditional E-value: 1.6e-38
   TIGR03689 170 elvleevPdvtyadiGGldsqieqirdavelPflhkelyreydlkpPkGvllyGPPGcGktliakavanslaekvaedgeaksyflnikGPellnkyvGeterqirliferarekaaegrPvvvffdemdslfrtr......GsGvssdvettvvPqllaeldGveslenviviGasnredlidPailrPGrldvkirierPdaeaaadilakyltedlPleed 387
                 ++ +e    vt++d+ G d    ++ + ve+ +++++ + + + k P+Gv++ GPPG+Gktl+a+ava            a   f++  G e+++ +vG    +ir +f+ a+++a    P +vf+de+d++ r r      G G   d     + q+l+e+dG      vivi a+nr d++d a+lrPGr+d ++ ++ Pd+++  +il+ +     P+++d
  MMETSP1137-20121227|4861_1 195 KIQMEPQTGVTFEDVAGCDASKFELTEVVEF-LKNPAKFSALGAKIPRGVIMEGPPGTGKTLLARAVAGE----------AGVPFISASGSEFVEMFVGVGAARIRSLFSEAKKNA----PCIVFIDEIDAVGRQRaggnrgGMGGGNDEREQTLNQILTEMDGXXGNAGVIVIAATNRADVLDSALLRPGRFDRRVPVDLPDKDGRLAILKVHSRG-KPIADD 402
                 556677788***********99999****96.67899******************************964..........3457**************************998876....**************994444334456678888899*******************************************************9987433.344443 PP

>> TIGR00382  clpX: ATP-dependent Clp protease, ATP-binding subunit ClpX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.0   0.0     6e-08   1.5e-05     121     198 ..     244     315 ..     238     326 .. 0.85

  Alignments for each domain:
  == domain 1    score: 22.0 bits;  conditional E-value: 6e-08
   TIGR00382 121 lliGptGsGktllaqtlakeldvpfaiadattlteaGyvGedvenillkllqaadydvekaekGiiyideidkiarks 198
                 ++ Gp G+Gktlla+++a e  vpf  a  + + e  +vG     i   l+ +     +k    i++ideid + r+ 
  MMETSP1137-20121227|4861_1 244 IMEGPPGTGKTLLARAVAGEAGVPFISASGSEFVEM-FVGVGAARI-RSLFSE----AKKNAPCIVFIDEIDAVGRQR 315
                 677***********************9999999996.999877665.456655....5677789**********9975 PP

>> TIGR00390  hslU: ATP-dependent protease HslVU, ATPase subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.1   1.2e-06   0.00031      46      91 ..     239     283 ..     235     299 .. 0.86
   2 ?    2.1   0.0     0.059        15     248     263 ..     300     315 ..     292     344 .. 0.83

  Alignments for each domain:
  == domain 1    score: 17.6 bits;  conditional E-value: 1.2e-06
   TIGR00390  46 vPknilmiGstGvGkteiarrlaklaeaPfikveatkftevGyvGr 91 
                 +P+ ++m G+ G Gkt +ar +a  a++Pfi    + f e+ +vG 
  MMETSP1137-20121227|4861_1 239 IPRGVIMEGPPGTGKTLLARAVAGEAGVPFISASGSEFVEM-FVGV 283
                 699************************************96.6664 PP

  == domain 2    score: 2.1 bits;  conditional E-value: 0.059
   TIGR00390 248 sGiifideidkiakkg 263
                   i+fideid + ++ 
  MMETSP1137-20121227|4861_1 300 PCIVFIDEIDAVGRQR 315
                 579*******998765 PP

>> TIGR03922  T7SS_EccA: type VII secretion AAA-ATPase EccA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.0   3.9e-07    0.0001     314     423 ..     242     356 ..     220     377 .. 0.72

  Alignments for each domain:
  == domain 1    score: 18.9 bits;  conditional E-value: 3.9e-07
   TIGR03922 314 HlllaGPPGtGkttiArvvakiyaGlgvlrkpevrEvsRadligeyigeseaktnelidkaLgg...vlFlDEayaLvekrdg.a......kddfGleaidtLLarlEndRdr..lvviiAG 423
                  +++ GPPGtGkt +Ar+va   aG+  +        s ++++  ++g  +a+   l  +a      ++F+DE+ a+  +r g +      ++d   + ++++L  ++    +  ++vi A 
  MMETSP1137-20121227|4861_1 242 GVIMEGPPGTGKTLLARAVAGE-AGVPFI------SASGSEFVEMFVGVGAARIRSLFSEAKKNapcIVFIDEIDAVGRQRAGgNrggmggGNDEREQTLNQILTEMDGXXGNagVIVIAAT 356
                 57999**************975.788765......568899***********99999988865433389****9999877543121111113344456788888888765544114444444 PP

>> TIGR00635  ruvB: Holliday junction DNA helicase RuvB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.0   1.8e-06   0.00045      33      95 ..     243     313 ..     230     316 .. 0.76

  Alignments for each domain:
  == domain 1    score: 17.2 bits;  conditional E-value: 1.8e-06
   TIGR00635  33 vllyGPPGlGkttlakiiakelgvklkitsgpalek......pgDlaailtaleegd..vlfiDeihrlsk 95 
                 v++ GPPG Gkt la+ +a e gv    +sg ++        +  + +++++ +++   ++fiDei ++ +
  MMETSP1137-20121227|4861_1 243 VIMEGPPGTGKTLLARAVAGEAGVPFISASGSEFVEmfvgvgAARIRSLFSEAKKNApcIVFIDEIDAVGR 313
                 7899*********************9999999876522222234555666665555344999999998876 PP

>> TIGR02639  ClpA: ATP-dependent Clp protease ATP-binding subunit ClpA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.9   0.0   0.00016     0.041     488     526 ..     242     279 ..     219     283 .. 0.87
   2 !    4.3   0.0    0.0077         2     264     290 ..     286     312 ..     279     340 .. 0.83

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 0.00016
   TIGR02639 488 gsflfvGptGvGktelakqLaeelgvellrfDmseymek 526
                 g  ++ Gp G Gkt la+++a e gv ++    se+ e 
  MMETSP1137-20121227|4861_1 242 G-VIMEGPPGTGKTLLARAVAGEAGVPFISASGSEFVEM 279
                 4.4679*****************************9985 PP

  == domain 2    score: 4.3 bits;  conditional E-value: 0.0077
   TIGR02639 264 erlkevveeiekeedailfiDeihtiv 290
                 +r++++ +e +k+   i+fiDei ++ 
  MMETSP1137-20121227|4861_1 286 ARIRSLFSEAKKNAPCIVFIDEIDAVG 312
                 79*********************9874 PP

>> TIGR00763  lon: ATP-dependent protease La
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.2   9.3e-06    0.0024     352     438 ..     236     317 ..     218     323 .. 0.76

  Alignments for each domain:
  == domain 1    score: 14.2 bits;  conditional E-value: 9.3e-06
   TIGR00763 352 kgki...lclvGPPGVGKtSlaksiAkalnrkfvrlslGGlkDvaeikGHRrtYvGalPGkiiqglkkvktenP.lillDEiDKlgssvrG 438
                  +ki   +++ GPPG GKt la+++A   +  f+  s  G + v         +vG    +i   + ++k++ P ++++DEiD +g++ +G
  MMETSP1137-20121227|4861_1 236 GAKIprgVIMEGPPGTGKTLLARAVAGEAGVPFISAS--GSEFVE-------MFVGVGAARIRSLFSEAKKNAPcIVFIDEIDAVGRQRAG 317
                 55544446789**********************7655..655443.......577777789999999999999944579****99988776 PP

>> TIGR02881  spore_V_K: stage V sporulation protein K
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.0   1.3e-05    0.0033      45     120 ..     243     317 ..     209     385 .. 0.76

  Alignments for each domain:
  == domain 1    score: 14.3 bits;  conditional E-value: 1.3e-05
   TIGR02881  45 mifkGnPGtGkttvarllaklfkelnvlskGhlieveradlvGeyiGhtaqktrevi...kkalGGvlfideayslar...G 120
                 +i++G PGtGkt +ar +a    e +v     +i +  +++v  ++G  a ++r +    kk    ++fide  ++ r   G
  MMETSP1137-20121227|4861_1 243 VIMEGPPGTGKTLLARAVAG---EAGV----PFISASGSEFVEMFVGVGAARIRSLFseaKKNAPCIVFIDEIDAVGRqraG 317
                 7999************9985...7776....589999*****************976333677889******9888764442 PP

>> TIGR02902  spore_lonB: ATP-dependent protease LonB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.2   0.0   4.2e-05     0.011      80     131 ..     234     287 ..     226     306 .. 0.75
   2 ?   -0.8   0.0      0.36        92     295     332 ..     414     451 ..     396     467 .. 0.81

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 4.2e-05
   TIGR02902  80 alcGpnpqhviiyGppGvGktaaarlvleeakksaaspfkee..akfveidatt 131
                 al    p+ vi+ GppG Gkt  ar v  ea     s    e    fv + a+ 
  MMETSP1137-20121227|4861_1 234 ALGAKIPRGVIMEGPPGTGKTLLARAVAGEAGVPFISASGSEfvEMFVGVGAAR 287
                 66667799*******************999976555544333113455555555 PP

  == domain 2    score: -0.8 bits;  conditional E-value: 0.36
   TIGR02902 295 asnGreavnlvqlaaGlalnenrkkilaediewviesg 332
                   +G    nl++ aa +a+  ++k+i+  + ++ i+  
  MMETSP1137-20121227|4861_1 414 GXSGASLANLMNEAAIVAARXDKKEITYXEXDYXIDRX 451
                 46899999********************9999988765 PP

>> TIGR02640  gas_vesic_GvpN: gas vesicle protein GvpN
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   0.0   3.7e-05    0.0094      22      56 ..     241     275 ..     227     290 .. 0.87
   2 ?   -2.5   0.0       2.5   6.3e+02     105     131 ..     384     410 ..     376     422 .. 0.74

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 3.7e-05
   TIGR02640  22 ypvhlrGPaGtGktslalhvakkrdrPvvllnGda 56 
                 + v + GP GtGkt la++va + + P +   G +
  MMETSP1137-20121227|4861_1 241 RGVIMEGPPGTGKTLLARAVAGEAGVPFISASGSE 275
                 568899*********************99888865 PP

  == domain 2    score: -2.5 bits;  conditional E-value: 2.5
   TIGR02640 105 eGftlvydefsrskPeannvllsvlee 131
                 +G   + +  sr kP a++v l ++  
  MMETSP1137-20121227|4861_1 384 DGRLAILKVHSRGKPIADDVQLDIVAK 410
                 555566667788888888888887755 PP

>> TIGR02173  cyt_kin_arch: putative cytidylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.1   2.7e-05     0.007       3      31 ..     243     271 ..     242     279 .. 0.92

  Alignments for each domain:
  == domain 1    score: 14.2 bits;  conditional E-value: 2.7e-05
   TIGR02173   3 ivisGpPGsGkttvakilaeklslklisa 31 
                 +++ GpPG+Gkt +a+ +a + ++ +isa
  MMETSP1137-20121227|4861_1 243 VIMEGPPGTGKTLLARAVAGEAGVPFISA 271
                 6889***********************98 PP

>> TIGR02928  TIGR02928: orc1/cdc6 family replication initiation protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   0.00015     0.039      34      61 ..     234     261 ..     218     267 .. 0.84
   2 ?   -1.8   0.0      0.91   2.3e+02     127     142 ..     297     312 ..     287     363 .. 0.74

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 0.00015
   TIGR02928  34 ilrgsrpsnvliyGktGtGKtavtkkvl 61 
                 +l  + p+ v++ G++GtGKt+ +++v 
  MMETSP1137-20121227|4861_1 234 ALGAKIPRGVIMEGPPGTGKTLLARAVA 261
                 5667889*****************9987 PP

  == domain 2    score: -1.8 bits;  conditional E-value: 0.91
   TIGR02928 127 redsliivLDEiDklv 142
                 ++   i+ +DEiD + 
  MMETSP1137-20121227|4861_1 297 KNAPCIVFIDEIDAVG 312
                 4555678889999874 PP

>> TIGR00368  TIGR00368: Mg chelatase-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.0   0.00025     0.063     214     233 ..     243     262 ..     198     273 .. 0.91

  Alignments for each domain:
  == domain 1    score: 9.6 bits;  conditional E-value: 0.00025
   TIGR00368 214 llllGPPGsGktllakrlqg 233
                 +++ GPPG+Gktlla+ + g
  MMETSP1137-20121227|4861_1 243 VIMEGPPGTGKTLLARAVAG 262
                 7899***********99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (494 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       180  (0.043881); expected 82.0 (0.02)
Passed bias filter:                      158  (0.0385178); expected 82.0 (0.02)
Passed Vit filter:                        44  (0.0107265); expected 4.1 (0.001)
Passed Fwd filter:                        16  (0.00390054); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              16  [number of targets reported over threshold]
# CPU time: 0.55u 0.18s 00:00:00.73 Elapsed: 00:00:00.66
# Mc/sec: 987.92
//
Query:       MMETSP1137-20121227|4862_1  [L=629]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (629 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        58  (0.0141394); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.14s 00:00:00.52 Elapsed: 00:00:00.45
# Mc/sec: 1844.91
//
Query:       MMETSP1137-20121227|4864_1  [L=429]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (429 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        73  (0.0177962); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.16s 00:00:00.44 Elapsed: 00:00:00.72
# Mc/sec: 786.44
//
Query:       MMETSP1137-20121227|4866_1  [L=213]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (213 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        57  (0.0138957); expected 82.0 (0.02)
Passed bias filter:                       44  (0.0107265); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.17s 00:00:00.37 Elapsed: 00:00:00.47
# Mc/sec: 598.16
//
Query:       MMETSP1137-20121227|4867_1  [L=648]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (648 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        90  (0.0219405); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.14s 00:00:00.56 Elapsed: 00:00:00.72
# Mc/sec: 1187.90
//
Query:       MMETSP1137-20121227|4868_1  [L=876]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        2.5    5.0   5.8        5.8    3.9   4.1    1.5  1  TIGR01478 STEVOR: variant surface antigen, stevor family


Domain annotation for each model (and alignments):
>> TIGR01478  STEVOR: variant surface antigen, stevor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   4.1    0.0014       5.8     191     287 ..     453     548 ..     444     562 .. 0.71

  Alignments for each domain:
  == domain 1    score: 3.9 bits;  conditional E-value: 0.0014
   TIGR01478 191 svlltklGiaaaktaaieaiagslsvdiasklskalaginflnssslesalvtavgivsgaadeaesaasaatsiflPyGiaalvLiilvvvliiLY 287
                  ++ t lG a a+  a +  +++ ++ +a + +++          +  +al +a  ++ +a  +a  +a +  + +   G+aa  L++l ++l++L 
  MMETSP1137-20121227|4868_1 453 EAIRTALGAARAALGAARFXTALGAARAALEAARTALAAARAALAAARTALASAR-TALAAIRTALAVARTRRALLRAAGLAAHLLLLLLLLLLLLL 548
                 5677889998887777767777777766665555444444445555567777766.55569999*******************88887777666553 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (876 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       214  (0.0521697); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.16s 00:00:00.71 Elapsed: 00:00:00.71
# Mc/sec: 1628.49
//
Query:       MMETSP1137-20121227|4869_1  [L=956]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (956 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       557  (0.135787); expected 82.0 (0.02)
Passed bias filter:                       97  (0.023647); expected 82.0 (0.02)
Passed Vit filter:                        30  (0.00731351); expected 4.1 (0.001)
Passed Fwd filter:                         9  (0.00219405); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 1.18u 0.18s 00:00:01.36 Elapsed: 00:00:00.98
# Mc/sec: 1287.57
//
Query:       MMETSP1137-20121227|4870_1  [L=381]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.6e-13   47.3   0.0    1.9e-13   47.0   0.0    1.0  1  TIGR03903 TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
     0.0003   18.2   0.1    0.00053   17.3   0.0    1.4  1  TIGR03724 arch_bud32: Kae1-associated kinase Bud32


Domain annotation for each model (and alignments):
>> TIGR03903  TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.0   0.0   9.3e-17   1.9e-13      20     195 ..      52     219 ..      36     265 .. 0.81

  Alignments for each domain:
  == domain 1    score: 47.0 bits;  conditional E-value: 9.3e-17
   TIGR03903  20 rlvaRFrReialCarLshPnivaLlDsGeaedgllFavFeyveGrtlrevLaa...dGaLpaaetgrLmlqvLDalaaahdaGvvhRDLkPqnimvsaadveshakvLDFGigaLlpgvedadeatltrttevlGsPaYaaPeqLRgepvtaksDlYaWGLivleCLtGkrvvqGasva 195
                 + +a    ei + a +  P+++    +   e ++l+ v e+     l   L++    G L+  +   L +q+  ++ + h++ ++hRDLk  n+ + a++     k+ D G++ +l   ++ ++         +G+P Y aPe  R+ p  +k D+++ G ++ e  t ++  + +s+ 
  MMETSP1137-20121227|4870_1  52 KDRAEAVNEIRVLASIVGPHVITFH-EAFVEADILYIVTEFATHGDLFGFLNNakrRGQLAESTIWTLFIQMCLGVQTLHEKNILHRDLKGANVFMCANN---FVKLGDLGVSKVLKHQDALAR-------TQVGTPYYVAPEIWRNRPYNSKCDIWSLGCMLYELCTFRPPFEAQSME 219
                 45566668999*********99875.5667777********9998898888763336**************************************99865...68999******9987766333.......358******************************999988777777664 PP

>> TIGR03724  arch_bud32: Kae1-associated kinase Bud32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.0   2.6e-07   0.00053      93     143 ..     106     167 ..      28     172 .. 0.69

  Alignments for each domain:
  == domain 1    score: 17.3 bits;  conditional E-value: 2.6e-07
   TIGR03724  93 l..........ellkevGelvgklHkagivhgDlttsNiiv.kddklyliDfGLgkkskeve 143
                             l+ ++   v +lH+++i+h Dl  +N+ +  ++ + l D+G +k+ k+  
  MMETSP1137-20121227|4870_1 106 RrgqlaestiwTLFIQMCLGVQTLHEKNILHRDLKGANVFMcANNFVKLGDLGVSKVLKHQD 167
                 33444444455788889999******************998456677799999999877655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (381 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       100  (0.0243784); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.31u 0.13s 00:00:00.44 Elapsed: 00:00:00.44
# Mc/sec: 1142.91
//
Query:       MMETSP1137-20121227|4871_1  [L=750]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   1.9e-186  619.7   0.0   2.5e-125  417.5   0.0    2.1  2  TIGR00392 ileS: isoleucine--tRNA ligase
    3.9e-77  257.8   0.0      2e-60  202.6   0.0    3.0  3  TIGR00422 valS: valine--tRNA ligase
    1.4e-17   60.8   0.0    1.1e-13   47.9   0.0    2.1  2  TIGR00395 leuS_arch: leucine--tRNA ligase
    5.3e-17   59.5   0.0    4.4e-13   46.6   0.0    2.2  2  TIGR00398 metG: methionine--tRNA ligase
    8.1e-17   58.4   0.0      6e-10   35.7   0.0    3.3  2  TIGR00396 leuS_bact: leucine--tRNA ligase
    0.00053   17.0   0.0    0.00076   16.5   0.0    1.2  1  TIGR00435 cysS: cysteine--tRNA ligase


Domain annotation for each model (and alignments):
>> TIGR00392  ileS: isoleucine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  200.9   0.0   1.1e-62   7.4e-60     199     416 ..       5     233 ..       3     234 .. 0.91
   2 !  417.5   0.0  3.6e-128  2.5e-125     449     857 ..     234     633 ..     233     637 .. 0.97

  Alignments for each domain:
  == domain 1    score: 200.9 bits;  conditional E-value: 1.1e-62
   TIGR00392 199 vkdpsiyvkfkvkkeekteakvkl....................slliWTtTPWTLpsNlaiavnpdleYalveleskeevlilakkllekllkkage...edleiikkvkgsdlegleyehplsekkeqleevafvvlggdhVttedGtGivHtAPghGeeDyevgkkygleevllpvdekgvyteevadlkgrfvkdadkdvlk.ankaiiekLkeknlllkaekikHsyPhcwRtkkPv 416
                 ++++siyv f+v++ +++    +l                    ++ +WTtTPWT+p+Nla+avn++l+Ya+++  s +++li+ak+l++++ +++g    e++ i+  +kg+dleg++y+hpl+++++       vv+ggd++tte+GtG+vHtAPghG+eDy  g kygl e+l+pvd++g++t+e+ +       +++ +vl   n a+i +Lk+ ++l++ae ++H+yP++wRtkkP+
  MMETSP1137-20121227|4871_1   5 HTSTSIYVGFTVETPSAKLRALSLslpsesdetgeakdtketelRVAVWTTTPWTMPANLAVAVNAELDYAVLSHPSLHHKLIVAKALASSVSSRLGLpegEEASIVGVLKGADLEGTTYRHPLYDRVS------KVVIGGDYITTESGTGLVHTAPGHGQEDYLTGVKYGL-ELLSPVDDAGCFTSEAGE------AFQGLSVLGeGNTAVIDALKTAGALIAAEPYEHKYPYDWRTKKPT 233
                 789999999999976665544444778999999999999999999*************************************************998777799**************************......89***********************************.7*************9888......455555443257789999**************************8 PP

  == domain 2    score: 417.5 bits;  conditional E-value: 3.6e-128
   TIGR00392 449 gekRlkkmlenrkdWciSRqRyWGvPipvwvaekteel.ivvgsieeleekiekkgidawiedlhkdlldkitlkskeggeykreedvlDvWfdSGsspyavleyklenekkkevfpadlilEGsDQtrGWFyssllisvalsdkapykkvithGfvldekGrKMSKslgNvvdpekvik.........kyGaDvlRlyvassdpaedlkfseeilkevaekllkilnntlrFlllyanLdkfkpeekslkveklkelDrwilsklnslveeveealekyeflkvlraledfvseeLsnwYlriskdrlyaekkdedkr.aaqttlyeiletlvkllapilpflaeeiyqnlkeekkeesvhlnefpevdeeavdealeasmklvkeiveavlalrdkvnkklrqplkelvikksdeeal 857
                 +e+R++ m e+r+dWciSRqR+WGvPipv+++ +t+e+ ++ +++++++  +ek+g+daw++ ++k+ll++ + +++  +++ + +d++DvWfdSG+s++av++++ +       +padl+lEGsDQ+rGWF+ssll+sva+++ apyk+v+thGfvldekG KMSKslgNvvdp++vi+          yGaDvlRl+vas+++a d+ ++ +i+k++ e+++k +n t+rFll  +nL++f+p+++++++ +l+++Dr +l  l +l++ev+ a+++y+f+++l  +++fv+++Lsn+Yl++ kdrly+++ +e +r ++q ++ +++e+l+ +lap+lp+lae+i+qnl++e k++sv+++ +p       d  l++s +     + av+alrd++nk +++++++++i +s e++l
  MMETSP1137-20121227|4871_1 234 MENRITAMTESRSDWCISRQRTWGVPIPVFYDRDTDEVlLNQETLAHVQALFEKQGSDAWWKLSEKELLPEPYASEA--DKWVKGTDTMDVWFDSGASWAAVAKARPK-----LAYPADLYLEGSDQHRGWFQSSLLTSVAANGIAPYKAVLTHGFVLDEKGYKMSKSLGNVVDPKSVIEgganqkkepGYGADVLRLWVASVNYAADVCIGPSIIKQTFESYRKLRN-TARFLL--GNLHDFEPQSHTVPFDELPQIDRHMLGLLSQLLTEVKVAYSEYQFSRALGLVQQFVVSDLSNFYLDVGKDRLYISAPEEARRrSCQYVISASIEALAVALAPLLPHLAEDIWQNLPYEPKSKSVFQAGWPDL-----DAPLTDSAE-----WAAVRALRDEANKCIERARADKLIGASLEAKL 633
                 589***********************************9********************************998887..6************************9987.....99************************************************************************999*************************************9.******..******************************************************************************99999**********************************99**********996.....777776655.....5899***********************99887 PP

>> TIGR00422  valS: valine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.0     0.016        11     209     233 ..      47      71 ..      33      89 .. 0.79
   2 !   50.0   0.0   3.7e-17   2.5e-14     239     350 ..     118     232 ..     115     235 .. 0.92
   3 !  202.6   0.0   2.9e-63     2e-60     387     761 ..     234     640 ..     232     685 .. 0.86

  Alignments for each domain:
  == domain 1    score: 1.7 bits;  conditional E-value: 0.016
   TIGR00422 209 kdklvvATTRPEtllgdtavaVhPe 233
                 + ++ v TT P t+ +  avaV+ e
  MMETSP1137-20121227|4871_1  47 ELRVAVWTTTPWTMPANLAVAVNAE 71 
                 2356777***************976 PP

  == domain 2    score: 50.0 bits;  conditional E-value: 3.7e-17
   TIGR00422 239 elvgkkvilPlvnrkipiiaD.eevdkefGtGvvkvtpahDknDyevgkrhklelinildedgklneea.geyqglerf.earkkvvedlkeegllvkieplkqnvgtceRsktv 350
                 +l g + ++Pl +r  +++   +++ +e GtG v  +p h ++Dy +g ++ lel++ +d+ g ++ ea + +qgl+++ e  ++v+++lk++g l   ep++++ ++ +R+k++
  MMETSP1137-20121227|4871_1 118 DLEGTTYRHPLYDRVSKVVIGgDYITTESGTGLVHTAPGHGQEDYLTGVKYGLELLSPVDDAGCFTSEAgEAFQGLSVLgEGNTAVIDALKTAGALIAAEPYEHKYPYDWRTKKP 232
                 68899999******99976544*******************************************9999467*****975899****************************9986 PP

  == domain 3    score: 202.6 bits;  conditional E-value: 2.9e-63
   TIGR00422 387 fekeylsWleelkdWcISRQliwghriPvwyeketgevvvakeeaeekekt..klgs....................keleqdeDVLDTWfsSslwplstlgWpeek.kdlkkfyptsllvtgfDIiffWvarmillslaltgqvPfkevlihglvrdeqgrKmSKSlgNvidPldlie.........kyGaDalRftlaalvaaGrDinldlkkveaarkFlnKlwnasrfvlmnledk..keleegeeklsladrwilsklnelikevrealdkyrfaeaakalyeFiWndfcdwyiElvKkelyeee..eeekkeakstlaivLdkllrllhpfiPflteeiyqklkek..adsimlasyPeveeelvdekaekefelvk.eiikevRnlkaesnialnaklevllkleea 761
                 +e+++++ +e+  dWcISRQ+ wg +iPv+y+++t ev  ++e+  + +    k+gs                     ++ + +D +D Wf+S+ +      W        k  yp++l  +g D  + W    +l+s+a  g  P+k vl hg+v de+g KmSKSlgNv+dP  +ie          yGaD lR+++a+      D+ +  + ++++ +  +Kl n +rf l nl+d   ++ + + ++l ++dr++l  l++l +ev+ a ++y+f+ a   +++F+ +d+ + y+++ K +ly     e+++++ + +++  ++ l   l+p++P+l+e i+q+l+ +  ++s+ +a +P  ++ l+d ++ +++  +  e+ k + + +a++ i ++ + +++++ e++
  MMETSP1137-20121227|4871_1 234 MENRITAMTESRSDWCISRQRTWGVPIPVFYDRDTDEVLLNQETLAHVQALfeKQGSdawwklsekellpepyaseaDKWVKGTDTMDVWFDSGAS------WAAVAkARPKLAYPADLYLEGSDQHRGWFQSSLLTSVAANGIAPYKAVLTHGFVLDEKGYKMSKSLGNVVDPKSVIEgganqkkepGYGADVLRLWVASVNY-AADVCIGPSIIKQTFESYRKLRNTARFLLGNLHDFepQSHTVPFDELPQIDRHMLGLLSQLLTEVKVAYSEYQFSRALGLVQQFVVSDLSNFYLDVGKDRLYISApeEARRRSCQYVISASIEALAVALAPLLPHLAEDIWQNLPYEpkSKSVFQAGWPDLDAPLTDSAEWAAVRALRdEANKCIERARADKLIGASLEAKLVVHVEDE 640
                 7888888889999******************66666666664444333332222333556666666777777777668***************964......443332334568*************************************************************************************99888.89*****************************99876666666788999****************************************************997654488899999*****************************9988899****************999888887762556678888888888888888777776665 PP

>> TIGR00395  leuS_arch: leucine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.8   0.0   2.7e-05     0.019     206     318 ..      44     164 ..      37     172 .. 0.81
   2 !   47.9   0.0   1.6e-16   1.1e-13     606     810 ..     375     612 ..     339     647 .. 0.81

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 2.7e-05
   TIGR00395 206 edgalylvaatlrPetvyGvtnvfvnPeieyvive..vgdekfivskeaveklsyqklk.....lkvieevkgkqligkkvkaPvvgkevp.iLPaefvdaekatGvvlsvPahaPadyia 318
                 ++++l + + t  P t+    +v vn e +y+ +     ++k iv+k+ +  +s +          +++ +kg +l g++ + P+  +  + ++  +++++e +tG v + P h  +dy++
  MMETSP1137-20121227|4871_1  44 KETELRVAVWTTTPWTMPANLAVAVNAELDYAVLShpSLHHKLIVAKALASSVSSRLGLpegeeASIVGVLKGADLEGTTYRHPLYDRVSKvVIGGDYITTESGTGLVHTAPGHGQEDYLT 164
                 55566777788999999999999********988622456889999998888876532234445999999**************888766516789***********************87 PP

  == domain 2    score: 47.9 bits;  conditional E-value: 1.6e-16
   TIGR00395 606 rgivvnGyvlle.gkklskskGnlltlkeave.....k....fGadvarlylldaaelvedadfkeseveaakkrlerlkefaeeiakksd.....levg..eelsfldrwllsrlnkaikevkealenlelrkavka.alfelkkdvdyyrrrsgenvkd.............vlaevleaiikLlaPfaPhlaeelyeev...GkegfvseakfPevseeavdkevekaeeylrnlv 810
                 +++  +G+vl e g k+sks Gn++  k+++e     k    +Gadv rl++++  ++  d+ +  s ++++ +  ++l++ a+    +++     +++   +el  +dr +l+ l +++ evk a+ ++++ +a+     f + +  ++y+  ++++                v+   +ea +  laP+ Phlae++++++    k  +v +a +P+++ +  d+   +a   lr+  
  MMETSP1137-20121227|4871_1 375 KAVLTHGFVLDEkGYKMSKSLGNVVDPKSVIEgganqKkepgYGADVLRLWVAS-VNYAADVCIGPSIIKQTFESYRKLRNTARFLLGNLHdfepqSHTVpfDELPQIDRHMLGLLSQLLTEVKVAYSEYQFSRALGLvQQFVVSDLSNFYLDVGKDRLYIsapeearrrscqyVISASIEALAVALAPLLPHLAEDIWQNLpyePKSKSVFQAGWPDLDAPLTDSAEWAAVRALRDEA 612
                 677778887755378***********9999975555415666********9875.68999************9999999999998877765566764554578999*****************************964145677777889988887775444566777889999**************************9855567899***********988877666666666554 PP

>> TIGR00398  metG: methionine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.5   0.0   5.5e-05     0.038     212     242 ..     234     262 ..     219     269 .. 0.77
   2 !   46.6   0.0   6.5e-16   4.4e-13     306     506 ..     368     580 ..     364     589 .. 0.82

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 5.5e-05
   TIGR00398 212 vknvlenflkegLkdlaitRdlvewGipvPk 242
                 ++n +++++++   d++i+R+   wG+p+P 
  MMETSP1137-20121227|4871_1 234 MENRITAMTES-RSDWCISRQRT-WGVPIPV 262
                 45555555555.79********9.******5 PP

  == domain 2    score: 46.6 bits;  conditional E-value: 6.5e-16
   TIGR00398 306 alelklpkqlvahgyltve.gkkmSkSkgnvvdpedlla.......r..ygadilRYyllkevplekDldfsledfvervNaelvnklgNllnRtlgfikkyf..egklksvkeaseedekllkkieealekidealekfefkkaleei..lklvsegnklideekPwelakee..ekekellavllelirvlsillkpilpklsekilkllnlele 506
                 a +++  k++++hg+++ e g kmSkS+gnvvdp+ +++       +  ygad+lR ++ ++v+   D+ +  + ++++   e   kl N +  +lg  + +    + +++ +   + d+++l  +++ l +++ a+ +++f++al  +  + +++  n ++d  k+    +    ++ +++++v++ +i++l++ l+p+lp+l+e i + l  e +
  MMETSP1137-20121227|4871_1 368 ANGIAPYKAVLTHGFVLDEkGYKMSKSLGNVVDPKSVIEgganqkkEpgYGADVLRLWV-ASVNYAADVCIGPSIIKQTF--ESYRKLRNTARFLLGNLHDFEpqSHTVPFDEL-PQIDRHMLGLLSQLLTEVKVAYSEYQFSRALGLVqqFVVSDLSNFYLDVGKDRLYISAPeeARRRSCQYVISASIEALAVALAPLLPHLAEDIWQNLPYEPK 580
                 456778899*********99**************998854444444246*******886.57899**************9..88999999998888888777621344555444.78899*************************9877225577899*****999977666554489999***************************999877766 PP

>> TIGR00396  leuS_bact: leucine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.7   0.0   8.8e-13     6e-10     302     496 ..     120     330 ..      41     341 .. 0.57
   2 !   17.1   0.0   3.6e-07   0.00025     604     777 ..     389     596 ..     377     614 .. 0.60

  Alignments for each domain:
  == domain 1    score: 35.7 bits;  conditional E-value: 8.8e-13
   TIGR00396 302 tglkainPltkekiPiyv.anyvlaeYGtgavmgvpahderDfeFakkyklkikevikka.....ekdlkeealteegvlvns....gefsglkseea........kekiikllekekkgkkkvnYkl...rDWlvsRqRYWGePiPiihledgnavpvpeedLPvkLPeleeldgeGvesPlskikewvkvkkpslgkkakretdtmdtfids..sW 496
                  g++  +Pl +    + + ++y+ +e Gtg v + p+h + D+    ky l++   ++ a     e     ea++   vl       +  + lk+  a        ++   ++ +k+ + +++++       DW +sRqR WG PiP+ ++ d++ v  ++e L   + +l e +g+ +   ls+++   +   ++   k  + tdtmd + ds  sW
  MMETSP1137-20121227|4871_1 120 EGTTYRHPLYDRVSKVVIgGDYITTESGTGLVHTAPGHGQEDYLTGVKYGLELLSPVDDAgcftsE---AGEAFQGLSVL--GegntAVIDALKTAGAliaaepyeHKYPYDWRTKKPTMENRITAMTesrSDWCISRQRTWGVPIPVFYDRDTDEVLLNQETLAH-VQALFEKQGSDAWWKLSEKELLPEPYASE-ADKWVKGTDTMDVWFDSgaSW 330
                 345556888777666666369*********************************999988543221...23333333332..22233333333333321100011012223444444444433332212226***************************9999864.33333333333344455544444444444.445689*********983344 PP

  == domain 2    score: 17.1 bits;  conditional E-value: 3.6e-07
   TIGR00396 604 ekmskskkngidPqeivk.....k....yGaDalRlyi........lFasPieksleWde.sgleGaeRfl.drvynlvkeils.ekea.............ktelkeealeeaekelrrevhkalkkvtedlekkeslntviselmkllnallkakk...eelllealkalvtvlspiaPhlaeelaeklgeee..seikqakwpkvdeta 777
                  kmsks +n++dP+ +++     k    yGaD lRl++        +  +P   + +++   +l+ + Rfl   ++++  + ++                   + l+e+++  +e ++ r++  + + v+ dl +   + + + +   ++ a ++a++   + ++ + ++al   l+p+ Phlae+++++l  e+  +++ qa wp +d  +
  MMETSP1137-20121227|4871_1 389 YKMSKSLGNVVDPKSVIEgganqKkepgYGADVLRLWVasvnyaadVCIGPSIIKQTFESyRKLRNTARFLlGNLHDFEPQSHTvPF-DelpqidrhmlgllSQLLTEVKVAYSEYQFSRALGLVQQFVVSDLSN---FYLDVGKDRLYISAPEEARRrscQYVISASIEALAVALAPLLPHLAEDIWQNLPYEPksKSVFQAGWPDLDAPL 596
                 69***************74444414566********983332223334567666666654268899999862566666555333112.12444554444333333334444444444444443333333333333...3333333333333333333244468999999*********************9876511456777888888765 PP

>> TIGR00435  cysS: cysteine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0   1.1e-06   0.00076     219     333 ..     343     467 ..     333     516 .. 0.79

  Alignments for each domain:
  == domain 1    score: 16.5 bits;  conditional E-value: 1.1e-06
   TIGR00435 219 eldiHsGGvDlifpHHeNEiaqsealfd.kqlvkyflHngflkiegeKmSKSlgNfitikdllk...k......fdpralRllllsvhyrnqldfseelleeaknalerlakalralkedlasak 333
                   d+   G+D      +  +  s a+ +  ++  +  H   l  +g KmSKSlgN++  k +++   +      + + +lRl ++sv+y   +    + ++++ +++ +l+++ r l  +l+  +
  MMETSP1137-20121227|4871_1 343 PADLYLEGSDQHRGWFQSSLLTSVAANGiAPYKAVLTHGFVLDEKGYKMSKSLGNVVDPKSVIEggaNqkkepgYGADVLRLWVASVNYAADVCIGPSIIKQTFESYRKLRNTARFLLGNLHDFE 467
                 56667777777777777777888888885555556666666777889**********9888764322123344488899**********************************998887776554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (750 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       108  (0.0263286); expected 82.0 (0.02)
Passed bias filter:                       99  (0.0241346); expected 82.0 (0.02)
Passed Vit filter:                        18  (0.0043881); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.78u 0.20s 00:00:00.98 Elapsed: 00:00:00.97
# Mc/sec: 1020.53
//
Query:       MMETSP1137-20121227|4872_1  [L=223]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (223 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       198  (0.0482691); expected 82.0 (0.02)
Passed bias filter:                      116  (0.0282789); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.14s 00:00:00.34 Elapsed: 00:00:00.43
# Mc/sec: 684.50
//
Query:       MMETSP1137-20121227|4874_1  [L=200]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (200 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       102  (0.0248659); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.12s 00:00:00.31 Elapsed: 00:00:00.46
# Mc/sec: 573.87
//
Query:       MMETSP1137-20121227|4875_1  [L=125]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (125 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       230  (0.0560702); expected 82.0 (0.02)
Passed bias filter:                      221  (0.0538762); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.15s 00:00:00.32 Elapsed: 00:00:00.32
# Mc/sec: 515.58
//
Query:       MMETSP1137-20121227|4876_1  [L=220]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.5e-11   41.6   0.5      3e-11   41.4   0.2    1.3  1  TIGR01385 TFSII: transcription elongation factor S-II


Domain annotation for each model (and alignments):
>> TIGR01385  TFSII: transcription elongation factor S-II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.4   0.2   7.2e-15     3e-11      23     102 ..       4      78 ..       1     146 [. 0.79

  Alignments for each domain:
  == domain 1    score: 41.4 bits;  conditional E-value: 7.2e-15
   TIGR01385  23 vidilkqLkklpvteellketkvGlkvnklrkkpnedikklakeliksWKkvvike.....eksenpagakeeklqrkesvksak 102
                  + +l+qL   pvt++ l++  +G++vnklrk+  e i++ ++++++ WK  v+k                 +  qr++++++ +
  MMETSP1137-20121227|4876_1   4 LLTMLQQLRSKPVTVKALEKSLIGVSVNKLRKHEHEPIATTSEQIVRAWKTIVEKTegravP----------QSSQRGSAASHSR 78 
                 6789**************************************************95444440..........3333433333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (220 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        82  (0.0199902); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.21u 0.17s 00:00:00.38 Elapsed: 00:00:00.37
# Mc/sec: 784.80
//
Query:       MMETSP1137-20121227|4877_1  [L=483]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (483 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.16s 00:00:00.48 Elapsed: 00:00:00.59
# Mc/sec: 1080.52
//
Query:       MMETSP1137-20121227|4879_1  [L=199]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (199 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       175  (0.0426621); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.12s 00:00:00.31 Elapsed: 00:00:00.56
# Mc/sec: 460.80
//
Query:       MMETSP1137-20121227|4880_1  [L=216]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (216 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        69  (0.0168211); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.13s 00:00:00.32 Elapsed: 00:00:00.32
# Mc/sec: 890.93
//
Query:       MMETSP1137-20121227|4881_1  [L=60]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.13s 00:00:00.24 Elapsed: 00:00:00.25
# Mc/sec: 316.77
//
Query:       MMETSP1137-20121227|4882_1  [L=142]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0061   14.7   3.4     0.0091   14.1   2.4    1.2  1  TIGR01031 rpmF_bact: ribosomal protein L32


Domain annotation for each model (and alignments):
>> TIGR01031  rpmF_bact: ribosomal protein L32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   2.4   2.2e-06    0.0091       1      18 [.      49      66 ..      49      74 .. 0.88

  Alignments for each domain:
  == domain 1    score: 14.1 bits;  conditional E-value: 2.2e-06
   TIGR01031  1 AVPkrktSksrkrkRRsh 18
                A Pk+++Sk+rk+kRR  
  MMETSP1137-20121227|4882_1 49 AAPKKRVSKQRKKKRRLG 66
                78**************75 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (142 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        41  (0.00999512); expected 82.0 (0.02)
Passed bias filter:                       37  (0.00901999); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.17u 0.14s 00:00:00.31 Elapsed: 00:00:00.28
# Mc/sec: 669.37
//
Query:       MMETSP1137-20121227|4883_1  [L=111]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (111 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        81  (0.0197465); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.15s 00:00:00.29 Elapsed: 00:00:00.80
# Mc/sec: 183.13
//
Query:       MMETSP1137-20121227|4884_1  [L=58]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        60  (0.014627); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.18s 00:00:00.30 Elapsed: 00:00:00.25
# Mc/sec: 306.21
//
Query:       MMETSP1137-20121227|4885_1  [L=377]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      2e-28   97.3   0.2    2.7e-27   93.6   0.1    2.0  1  TIGR00235 udk: uridine kinase
    3.2e-06   24.6   0.2    1.2e-05   22.7   0.1    1.9  2  TIGR00554 panK_bact: pantothenate kinase
  ------ inclusion threshold ------
      0.034   11.3   0.1      0.084   10.0   0.0    1.6  2  TIGR00972 3a0107s01c2: phosphate ABC transporter, ATP-binding protein


Domain annotation for each model (and alignments):
>> TIGR00235  udk: uridine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   93.6   0.1     2e-30   2.7e-27       6     186 ..      41     238 ..      35     246 .. 0.78

  Alignments for each domain:
  == domain 1    score: 93.6 bits;  conditional E-value: 2e-30
   TIGR00235   6 tiiigiaGasgsGkttvaekiv................ellkkekivlisqDnyYkdl...sdkelaerkkinfDhPdaldldlllehlknLkkgkavdvPvYdyvehtrkketvkvepkkvvileGilllvderlrdlldlkifvdtdldirlirrlerDieerGrsldsvikqyrkvvrpmyekfveptkkyaDliiP 186
                  ++ig+a  sg Gk+t +++++                ++l +  +++i+ D y+k     ++ + +  + i   h d+  +d + e ++nLk gkavd P+Y+++  +  +   +vep+ +vi eG+ +++d+r+++ ldl i++d + +++++ +l+rD+ erG + + v k   +  +p  ++fvep+k++aD+ii 
  MMETSP1137-20121227|4885_1  41 PVVIGLAADSGCGKSTFMRRMTgifggesklldigretNTLVSDMTTVICLDDYHKWDrtgRKSNPEWPNGITALHADCQLWDKMAEDVTNLKAGKAVDKPIYNHITGEX-DPDEHVEPTPIVIFEGLHPMYDDRVNEALDLTIYLDITDNVKFAWKLQRDMAERGATFEDVQKA-IEGRKPDXKEFVEPQKQKADIIIQ 238
                 488999999999996655554311111111111111113344567889999**9996533233334456778889999999*************************9775.555699******************************************************8665.5678******************95 PP

>> TIGR00554  panK_bact: pantothenate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0      0.16   2.2e+02      76      98 ..      38      60 ..      24      70 .. 0.83
   2 !   22.7   0.1   8.8e-09   1.2e-05     146     247 ..     124     212 ..     117     245 .. 0.85

  Alignments for each domain:
  == domain 1    score: -1.2 bits;  conditional E-value: 0.16
   TIGR00554 76 akipyiisiaGsvavGksttari 98
                   p +i++a     Gkst  r 
  MMETSP1137-20121227|4885_1 38 DVKPVVIGLAADSGCGKSTFMRR 60
                55699**************8875 PP

  == domain 2    score: 22.7 bits;  conditional E-value: 8.8e-09
   TIGR00554 146 klvkfladlksGkdnvtapvyshltydviedkfevvekadilileGlnvlqsgtdkddetdrvfvsdfvdfsiyvdaeekllktwyierflklresafqdpd 247
                 k+ + +++lk+Gk +v  p+y h+t +  +  +e ve + i+i+eGl  +     +    d   v + +d++iy+d  ++  + w ++r +  r ++f+d +
  MMETSP1137-20121227|4885_1 124 KMAEDVTNLKAGK-AVDKPIYNHITGEXDP--DEHVEPTPIVIFEGLHPM----YD----D--RVNEALDLTIYLDITDNVKFAWKLQRDMAERGATFEDVQ 212
                 566778999***8.699********88766..578***********9744....33....2..267899*****************************9965 PP

>> TIGR00972  3a0107s01c2: phosphate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.0   6.1e-05     0.084      28      47 ..      42      61 ..      29      69 .. 0.79
   2 ?   -3.4   0.0      0.79   1.1e+03      98     123 ..     187     213 ..     184     217 .. 0.66

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 6.1e-05
   TIGR00972 28 kvtaliGpsGcGkstllrsl 47
                 v++l   sGcGkst++r +
  MMETSP1137-20121227|4885_1 42 VVIGLAADSGCGKSTFMRRM 61
                46789999**********87 PP

  == domain 2    score: -3.4 bits;  conditional E-value: 0.79
   TIGR00972  98 iydnvayglrlkg.ikdkkeldeivee 123
                 i dnv ++ +l+  + ++ +  e v++
  MMETSP1137-20121227|4885_1 187 ITDNVKFAWKLQRdMAERGATFEDVQK 213
                 889999999887535555555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (377 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       150  (0.0365675); expected 82.0 (0.02)
Passed bias filter:                      133  (0.0324232); expected 82.0 (0.02)
Passed Vit filter:                        40  (0.00975134); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.33u 0.16s 00:00:00.49 Elapsed: 00:00:00.48
# Mc/sec: 1036.66
//
Query:       MMETSP1137-20121227|4886_1  [L=290]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      4e-86  286.2   0.0    5.2e-86  285.9   0.0    1.0  1  TIGR01258 pgm_1: phosphoglycerate mutase 1 family
    2.6e-23   80.2   0.0    5.6e-16   56.3   0.0    2.1  2  TIGR03162 ribazole_cobC: alpha-ribazole phosphatase
      4e-11   40.6   0.0      4e-10   37.3   0.0    2.0  2  TIGR03848 MSMEG_4193: probable phosphomutase, MSMEG_4193 family
    1.8e-06   25.7   0.0    3.8e-06   24.7   0.0    1.5  1  TIGR00249 sixA: phosphohistidine phosphatase SixA


Domain annotation for each model (and alignments):
>> TIGR01258  pgm_1: phosphoglycerate mutase 1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  285.9   0.0     5e-89   5.2e-86       3     222 ..      37     256 ..      35     261 .. 0.99

  Alignments for each domain:
  == domain 1    score: 285.9 bits;  conditional E-value: 5e-89
   TIGR01258   3 lvlvrhGeseWnkenlftGWvdvelsekGkeeakeagkllkeeklefdvaytsllkraiktlnivldeldqlwlpvkksWrlnerhyGalqGldkaetaekyGeeqvkiwrrsfdvsPpeldekderspkkdrryaklkkkelPlteslkdtvervlPywedeiapelksgkrvlivahGnslralvkhleklsdeeilelniPtgiPlvyeldeelkpv 222
                 l +vrhG+seWn++  ftGW d++l+e G++ea+++g +l+ ++++fd+a+ts lkra +tl+i+l+  +q  lpv+k +rlnerhyGalqG  k e+++ +G+eqv+iw rs+dv+Pp+++ ++e+ p++d++y +l +++lPlteslkd +er  P+w++e+ p+l++gk+vl+v+hGn++r+ vk l+++sd++i  l+iP g+Plvy+ld++l+p+
  MMETSP1137-20121227|4886_1  37 LTFVRHGQSEWNEKHIFTGWSDIDLTELGRQEAVKGGAALHAAGIDFDIAFTSELKRAQNTLTILLNGCEQPRLPVVKDYRLNERHYGALQGRCKYEVQKEFGKEQVQIWSRSYDVAPPPVEPSSEFAPHNDHKYDHLPRDVLPLTESLKDQMERCRPFWRKEVEPALRAGKNVLVVTHGNAIRGCVKLLDDISDADIPYLEIPNGMPLVYQLDANLQPL 256
                 679**********************************************************************************************************************************************************************************************************************997 PP

>> TIGR03162  ribazole_cobC: alpha-ribazole phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.3   0.0   5.4e-19   5.6e-16       1     119 [.      37     162 ..      37     166 .. 0.85
   2 !   22.3   0.0   1.6e-08   1.6e-05     109     171 ..     177     242 ..     160     246 .. 0.84

  Alignments for each domain:
  == domain 1    score: 56.3 bits;  conditional E-value: 5.4e-19
   TIGR03162   1 lyLiRHgevevnkgkcY.GqtDvpLaekgeeqaaalrekl..edvkfdavvsSplsRcrelAella...eklklpiekddrLrEmdfGdwEgksydeisekyp.eldawakdlaharvpgGEsvad 119
                 l+++RHg+ e+n++  + G +D+ L+e g+++a +  ++l  +  +fd  ++S+l+R++++  +l    e+ +lp+ kd rL+E ++G+ +g+   e+++++  e  + +++  ++++p  E  ++
  MMETSP1137-20121227|4886_1  37 LTFVRHGQSEWNEKHIFtGWSDIDLTELGRQEAVKGGAALhaAGIDFDIAFTSELKRAQNTLTILLngcEQPRLPVVKDYRLNERHYGALQGRCKYEVQKEFGkEQVQIWSRSYDVAPPPVEPSSE 162
                 689******************************99999885577899******************95556677899**************************995555555555666666666555 PP

  == domain 2    score: 22.3 bits;  conditional E-value: 1.6e-08
   TIGR03162 109 arvpgGEsvadfsqRveefleelake...ekenvlivtHgGvirallahllglpleqllsieveyg 171
                  ++p  Es++d ++R+  f+ + ++    +++nvl+vtHg  ir ++  l +++ +++  +e+++g
  MMETSP1137-20121227|4886_1 177 DVLPLTESLKDQMERCRPFWRKEVEPalrAGKNVLVVTHGNAIRGCVKLLDDISDADIPYLEIPNG 242
                 567889**************99888778899***************99999998888888887776 PP

>> TIGR03848  MSMEG_4193: probable phosphomutase, MSMEG_4193 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.3   0.0   3.9e-13     4e-10       2     105 ..      37     144 ..      36     154 .. 0.85
   2 ?    0.8   0.0     0.057        58     133     159 ..     196     222 ..     175     226 .. 0.72

  Alignments for each domain:
  == domain 1    score: 37.3 bits;  conditional E-value: 3.9e-13
   TIGR03848   2 vllvrhgrstantaktLaGrtpGveLderGreqaaalaerl..adlpiaaivssPlercretveaiaear...glevavderltevdYGdWtGrelkeLakeeLwkvvq 105
                 + +vrhg+s  n +++++G+++ ++L+e Gr+ a +  + l  a++  +   +s l+r+++t++ +++      l+v+ d rl+e +YG  +Gr   e++ke   + vq
  MMETSP1137-20121227|4886_1  37 LTFVRHGQSEWNEKHIFTGWSD-IDLTELGRQEAVKGGAALhaAGIDFDIAFTSELKRAQNTLTILLNGCeqpRLPVVKDYRLNERHYGALQGRCKYEVQKEFGKEQVQ 144
                 568******************7.***********998777722567888899**************986644578888999*************999988887666666 PP

  == domain 2    score: 0.8 bits;  conditional E-value: 0.057
   TIGR03848 133 ldarleeehgpdavwvavshgDviksv 159
                 +++++e    +++  ++v+hg+ i+  
  MMETSP1137-20121227|4886_1 196 WRKEVEPALRAGKNVLVVTHGNAIRGC 222
                 56666777778888999******9975 PP

>> TIGR00249  sixA: phosphohistidine phosphatase SixA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.7   0.0   3.7e-09   3.8e-06       5      74 ..      39     112 ..      36     118 .. 0.88

  Alignments for each domain:
  == domain 1    score: 24.7 bits;  conditional E-value: 3.7e-09
   TIGR00249   5 lmrHGeAkekaa....sDkeRqLtkkGkdeaervaqwLkkagveldrilvSplvRAeqtaeivadaldesklev 74 
                  +rHG+ + +++      ++ +Lt+ G +ea + ++ L++ag+++d  ++S l RA++t+ i+ +  ++++l v
  MMETSP1137-20121227|4886_1  39 FVRHGQSEWNEKhiftGWSDIDLTELGRQEAVKGGAALHAAGIDFDIAFTSELKRAQNTLTILLNGCEQPRLPV 112
                 5899999999887776668889****************************************988877776655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (290 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        66  (0.0160897); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.25u 0.15s 00:00:00.40 Elapsed: 00:00:00.39
# Mc/sec: 981.46
//
Query:       MMETSP1137-20121227|4887_1  [L=849]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   1.3e-162  540.3   0.1   5.2e-103  343.3   0.0    2.0  2  TIGR00490 aEF-2: translation elongation factor aEF-2
    3.2e-71  238.2   0.0    8.3e-28   94.7   0.0    3.0  3  TIGR00484 EF-G: translation elongation factor G
    1.4e-51  173.2   1.1    4.7e-35  118.7   0.1    3.4  3  TIGR01394 TypA_BipA: GTP-binding protein TypA/BipA
    1.5e-39  133.6   0.7    2.6e-31  106.4   0.1    3.2  3  TIGR01393 lepA: GTP-binding protein LepA
    2.8e-18   63.5   0.1    3.4e-14   50.0   0.0    2.1  2  TIGR00503 prfC: peptide chain release factor 3
    6.5e-17   59.6   0.0    1.2e-16   58.7   0.0    1.4  1  TIGR00231 small_GTP: small GTP-binding protein domain
    7.8e-14   49.1   1.0    2.7e-13   47.3   0.1    2.1  2  TIGR00475 selB: selenocysteine-specific translation elongation factor
    1.6e-12   44.7   0.3    3.2e-10   37.1   0.0    2.3  2  TIGR00485 EF-Tu: translation elongation factor Tu
    1.5e-09   34.6   1.4    3.7e-09   33.4   0.1    2.1  2  TIGR00483 EF-1_alpha: translation elongation factor EF-1, subunit alpha
    5.4e-09   33.1   0.1    1.8e-06   24.8   0.0    2.3  2  TIGR00487 IF-2: translation initiation factor IF-2
    4.1e-08   29.9   0.1    7.6e-08   29.0   0.1    1.3  1  TIGR00491 aIF-2: translation initiation factor aIF-2
    2.1e-07   28.4   2.6    3.7e-06   24.2   0.3    2.7  2  TIGR03680 eif2g_arch: translation initiation factor 2, gamma subunit
    4.8e-06   23.6   0.6      0.013   12.4   0.0    2.2  2  TIGR03594 GTPase_EngA: ribosome-associated GTPase EngA
    9.7e-05   19.4   0.8    0.00046   17.2   0.2    2.3  2  TIGR02034 CysN: sulfate adenylyltransferase, large subunit


Domain annotation for each model (and alignments):
>> TIGR00490  aEF-2: translation elongation factor aEF-2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  195.1   0.0   1.2e-60   3.6e-58       6     212 ..       6     221 ..       3     243 .. 0.91
   2 !  343.3   0.0  1.8e-105  5.2e-103     237     718 ..     323     836 ..     294     838 .. 0.85

  Alignments for each domain:
  == domain 1    score: 195.1 bits;  conditional E-value: 1.2e-60
   TIGR00490   6 iakikelmekpefirnigivahidhgkttlsdnllagagmiseelageqlfldfdeqeqergitidaanvsmvheye..........gneylinlidtpghvdfggdvtramravdgaivvvcavegvmpqtetvlrqalkenvkpvlfinkvdrlinelkltaeelqerlikiiaevnklikkmapeefkdkwkvrvedgsvafgsayynwaisvp 212
                 i+ ++ +  kp+ irn+ ++ah+dhgk+tl+d l+a ag+i+   ag+ +  d  ++eq+r iti+++ +s+  + e          g+e+linlid+pghvdf  +vt a+r  dga+vvv+ vegv  qtetvlrqal e++kpv+ +nk+dr   el+  ae++ + + k i++vn l  + + ee   +  v+  +g+vaf + ++ wa ++ 
  MMETSP1137-20121227|4887_1   6 IEELQGIQRKPHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIASSAAGDTRLTDTRQDEQDRCITIKSTGISLFFKAEahyklppdsqGDEFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQTETVLRQALGERIKPVITVNKLDRAFLELQQPAEDMYKAFEKHIENVNVLCATYRDEEL-GDCMVDPTKGTVAFSAGLHGWAFTLT 221
                 566777889**************************************************************987543233344444499*****************************************************************************************************.7899******************8765 PP

  == domain 2    score: 343.3 bits;  conditional E-value: 1.8e-105
   TIGR00490 237 akkaplyqvvldmvikhlpspaeaqkyriaviwkgdlnseagkamlncdpegplavvitkivvdkhagev.avgrlysgaikkgsevylvd......skak...ariqqvgvymgpervevdeipagnivavvglkea.vageticstd.kkikafeaikhisepvvtvaieakntkdlpklievlrkvakedptvkveineetgehlisgmgelhleiivkkirek..agvevetsepivvyretvtgtsp.vvegkspnkhnrlyivvepleesv.......lqafkegkikdvkvkkkeiak.elieagldkeeakrveevyeg....nllinvtrgiqyldevkelilegfkeamrngpvakekvmgvkvklvdaklhedavhrgpaqvipavrkgifaallqaepvlleplqkvfinvpqdlmgaatreiqnrrgqile.mkqegd.mvtikakvpvaemfgfagairgategralwstefagfekv...p..relqeelvkevrkrkglk 718
                  k  p ++ +l+m+++hlpspa+aqkyr++ ++ g  +    k +  cdpegpl + i+k++  ++ g   a gr++sg+++ g +v +++      +k+    +++q+  ++mg +  +v+ ++agn +a+vg+ +  v   ti ++d  + +++ ++k+   pvv va+  kn++dlpkl+e l++++k dp v+  + ee+geh+i+g gelh+ei  k  +e+   g ++ +s+p+v yretvt +s+ ++ +kspnkhnrly++  pl   +        +a+++ +++ ++ + k +++  + + g +k  +++++++  +    n++++vt  +qyl+e+k+ ++ g++   ++gp+  e v  v++ + d++lh da+hrg  q+ip++r +  aa++ aep l ep+ +v ++ p++ mg +   i+ +rg ++e +++ g  +  ika  pv+e fgf+g +r  t g+a+  + f  ++ +   p  +e   elv  +rkrkglk
  MMETSP1137-20121227|4887_1 323 QKWLPAHDALLEMLVQHLPSPAKAQKYRVSSLYTGPSDDIWAKGIAACDPEGPLMMYISKMIPTPDKGRFyAFGRVFSGTVRTGAKVKIMGpnyvqgKKDDlyiKNVQRTILMMGRKTESVEAVTAGNTCALVGIDQYlVKAGTIADSDaTESHPIVTMKYSVSPVVRVAVGPKNPNDLPKLVEGLKRLSKSDPLVQCSM-EESGEHIIAGCGELHIEICLKDLQEDymNGAPITISDPVVSYRETVTAESSrTIISKSPNKHNRLYVKALPLGYGIddaqtplAEAIENNEVS-AEQDPKVRTRiLVDKFGWEKTTTQKIWCFGPDgtgpNIVVDVTVAVQYLNEIKDSVVAGWQWVTKEGPICDETVRDVRIDIHDVVLHADAIHRGGGQIIPTARRCFLAAMMTAEPRLQEPVFMVEVQCPENAMGGVYSSINRKRGTVVEeINRPGTpLYNIKAYLPVSESFGFTGFLRQNTGGQAFPQMVFHHWDTMngcPftDEKTLELVTSIRKRKGLK 836
                 455799**********************************************************999986489*************977542111113433222467888899**********************98525566777766157899*******************************************98.789**********************965689***************997652799**************999765521111102333333333.3334444444155688***********9864223349*************************************************************************************************************99736666753789**************************999998888763223325777799**********8 PP

>> TIGR00484  EF-G: translation elongation factor G
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.7   0.0   2.8e-30   8.3e-28       8     147 ..      17     168 ..      13     189 .. 0.89
   2 !   89.6   0.0     1e-28     3e-26     269     490 ..     331     573 ..     321     583 .. 0.81
   3 !   50.0   0.0   9.8e-17   2.9e-14     536     676 ..     667     811 ..     651     818 .. 0.87

  Alignments for each domain:
  == domain 1    score: 94.7 bits;  conditional E-value: 2.8e-30
   TIGR00484   8 eklrniGisahidaGktttterilfytgkihkigevhdGa.atmdwmeqekerGititsaattvewkd..............frinlidtPGhvdftveverslrvldGavavldavaGvepqsetvwrqakkyevPrivfvnkmdkiGanflkv 147
                 +++rn+ + ah+d Gk+t+t+ ++  +g i        G     d  + e++r iti s+  + ++k               f inlid+PGhvdf+ ev  +lrv dGa++v+d+v Gv  q+etv rqa   ++  ++ vnk+d+   + ++ 
  MMETSP1137-20121227|4887_1  17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIA---SSAAGDtRLTDTRQDEQDRCITIKSTGISLFFKAeahyklppdsqgdeFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQTETVLRQALGERIKPVITVNKLDRAFLELQQP 168
                 589*******************999888754...455565256699999******************99*****************************************************************************987666655 PP

  == domain 2    score: 89.6 bits;  conditional E-value: 1e-28
   TIGR00484 269 llldavvdylPsPvdvkaikaidedt..ekeielk....asddepfvalafkvatdpfvgkl.tfvrvysGvlksGsevl....nsrkekke.....rvgrlvkmhankreeieevraGdiaaliGlkdtt.tGdtlcdekae..vilesmefp.ePvislavePktkadqekmgialgklaeedPtfkvftdeesgqtiiaGmGelhldiivdrlkrefkve..vnvGkPqvayretirkkae 490
                 +ll+ +v++lPsP   ++ +  +  t   ++i  k     + + p++    k+   p  g++ +f rv+sG++++G +v+    n ++ kk+      v r + m  +k+e +e v+aG+ +al+G+++      t++d++a+    + +m+++  Pv+ +av Pk+ +d  k+   l +l++ dP  +  + eesg+ iiaG Gelh++i ++ l+ ++     + +  P v+yret++ +++
  MMETSP1137-20121227|4887_1 331 ALLEMLVQHLPSPAKAQKYRVSSLYTgpSDDIWAKgiaaCDPEGPLMMYISKMIPTPDKGRFyAFGRVFSGTVRTGAKVKimgpNYVQGKKDdlyikNVQRTILMMGRKTESVEAVTAGNTCALVGIDQYLvKAGTIADSDATesHPIVTMKYSvSPVVRVAVGPKNPNDLPKLVEGLKRLSKSDPLVQC-SMEESGEHIIAGCGELHIEICLKDLQEDYMNGapITISDPVVSYRETVTAESS 573
                 799999*******99887665444332244444332211577899999999*99999999964799************9866778899998533333799***************************98651567888877651145777887548******************************9986.5689************************98651167899*********98875 PP

  == domain 3    score: 50.0 bits;  conditional E-value: 9.8e-17
   TIGR00484 536 yipavdkGleealesGvlaGyPvvdikvtlfdGsyhdvdsselafkl..aaslalkeavkkakPvllePimkvevevPeeylGdvlGdlsrrrgliegseer..esvkvvkaevPlsemfGyatdlrsatqGraeysmeflkyae 676
                    +v +G +   ++G++    v d+++ ++d   h         ++  +a   + +a+ +a+P l eP+  vev+ Pe+ +G v   ++r+rg++  + +r  + +  +ka +P+se fG++  lr +t G+a   m f++++ 
  MMETSP1137-20121227|4887_1 667 IKDSVVAGWQWVTKEGPICDETVRDVRIDIHDVVLHADAIHRGGGQIipTARRCFLAAMMTAEPRLQEPVFMVEVQCPENAMGGVYSSINRKRGTVVEEINRpgTPLYNIKAYLPVSESFGFTGFLRQNTGGQAFPQMVFHHWDT 811
                 4467889999999*********************99866666666663368899****************************************997776662245789*******************************99975 PP

>> TIGR01394  TypA_BipA: GTP-binding protein TypA/BipA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  118.7   0.1   1.6e-37   4.7e-35       1     144 [.      19     176 ..      19     187 .. 0.95
   2 !   34.8   0.0   3.9e-12   1.2e-09     195     388 ..     370     567 ..     364     585 .. 0.79
   3 !   16.4   0.0   1.5e-06   0.00045     389     474 ..     729     815 ..     723     836 .. 0.87

  Alignments for each domain:
  == domain 1    score: 118.7 bits;  conditional E-value: 1.6e-37
   TIGR01394   1 irniaiiahvDhGkttlvDklLkqsgvlrekeeveervmDsndlererGitilakntavkykd..............tkinivDtPGhaDfGGevervlsmvdgvlllvDaseGplpqtrfvlkkalelglkpivvinkiDrpdarpeevvdevfdLf 144
                 irn+++iahvDhGk tl D+l+ ++g++ ++ + + r+ D+ + e++r iti +   ++ +k                 in++D PGh Df  ev   l + dg+l++vD++eG+  qt  vl++al  ++kp++ +nk+Dr+  + ++  + ++  f
  MMETSP1137-20121227|4887_1  19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIASSAAGDTRLTDTRQDEQDRCITIKSTGISLFFKAeahyklppdsqgdeFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQTETVLRQALGERIKPVITVNKLDRAFLELQQPAEDMYKAF 176
                 8************************************************************9999***********99****************************************************************9888888777777665 PP

  == domain 2    score: 34.8 bits;  conditional E-value: 3.9e-12
   TIGR01394 195 adkdeplqllvttldydeylGri.aigrverGkvkkgqqvallkkd......gkiekariskllafeglerveideaeaGdivavaGlediei.getiadaeeaealpllkvdePtlsmtfsvndsPlaGkegkkvtsrkirdrLereletnvalrveeteeadkfevsGrGeLhlsiLietmrre...GfelsvskPkvivkei 388
                  d++ pl + ++++  +   Gr  a grv +G+v++g +v+++  +      + +  + +++ + ++g +  ++++++aG+ +a++G+++  + + tiad +++e+ p++++   ++s ++ v  +P   ++  k     + + L+r  +++  ++  ++ee+ ++ ++G GeLh+ i + +++ +   G  +++s P v ++e+
  MMETSP1137-20121227|4887_1 370 CDPEGPLMMYISKMIPTPDKGRFyAFGRVFSGTVRTGAKVKIMGPNyvqgkkDDLYIKNVQRTILMMGRKTESVEAVTAGNTCALVGIDQYLVkAGTIADSDATESHPIVTMK-YSVSPVVRVAVGPKNPNDLPK-----LVEGLKRLSKSDPLVQ-CSMEESGEHIIAGCGELHIEICLKDLQEDymnGAPITISDPVVSYRET 567
                 57899*****************7478****************98765552223344456777788999999*******************998457************99986.478888888888877666443.....4455665555554444.4556668899***********999987532338889999999988874 PP

  == domain 3    score: 16.4 bits;  conditional E-value: 1.5e-06
   TIGR01394 389 dgkklePieeltidvpeefvgavieklgkrkgelk.dmeskgsGrvrlefkiPsrgliGfrtefltatrGegilnrvfdeyeplkge 474
                 + + +eP+  + +++pe+++g v  ++ +++g ++ +++  g+    ++  +P    +Gf + + ++t G+++ + vf++++ ++g 
  MMETSP1137-20121227|4887_1 729 EPRLQEPVFMVEVQCPENAMGGVYSSINRKRGTVVeEINRPGTPLYNIKAYLPVSESFGFTGFLRQNTGGQAFPQMVFHHWDTMNGC 815
                 56789**************************997615777778999****************999*****************99985 PP

>> TIGR01393  lepA: GTP-binding protein LepA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  106.4   0.1     9e-34   2.6e-31       2     139 ..      18     165 ..      17     189 .. 0.86
   2 !   21.4   0.0     5e-08   1.5e-05     207     388 ..     394     583 ..     372     591 .. 0.78
   3 ?    2.1   0.0     0.036        11     397     449 ..     731     784 ..     721     804 .. 0.78

  Alignments for each domain:
  == domain 1    score: 106.4 bits;  conditional E-value: 9e-34
   TIGR01393   2 kirnfsiiahidhGkstladrllektkavserel.keqlldsldlererGitikaqavrlkykak.........dgeeyvlnlidtPGhvdfsyevsrslaaceGalllvdaaqGveaqtlanvylalekdleiiPvinkidlPsadv 139
                 +irn+s+iah+dhGkstl+d l+  ++++ +      +l d+ + e++r itik++ + l +ka+         +g+e+ +nlid PGhvdfs ev+ +l  ++Gal++vd + Gv  qt + +  al + ++ +  +nk+d    + 
  MMETSP1137-20121227|4887_1  18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIASSAAgDTRLTDTRQDEQDRCITIKSTGISLFFKAEahyklppdsQGDEFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQTETVLRQALGERIKPVITVNKLDRAFLEL 165
                 8***************************988776156788********************99864222233322689********************************************************9999****9765555 PP

  == domain 2    score: 21.4 bits;  conditional E-value: 5e-08
   TIGR01393 207 vyvrvveGkikkgdkikllst......gkeyeveevgvltpkl.vkeeelkaGevGyliagikdvkdvkvGdtitsvkkpakealpGfk.kvkpvvfaglyPidsedyeelrdaleklklndasltyekesskalGfGfrcGflGllhleviqerleref..dldliataPsvvyk..vklkdgevievenPse 388
                 ++ rv++G++++g k+k++        + +  +++v  + + + +k+e+++a   G  +a +   +      ti++++   ++++   k  v pvv  ++ P + +d  +l + l++l+ +d  ++  +e s   G  + +G  G lh+e+  + l+ ++     + +  P v+y+  v+ ++ ++i  ++P++
  MMETSP1137-20121227|4887_1 394 AFGRVFSGTVRTGAKVKIMGPnyvqgkKDDLYIKNVQRTILMMgRKTESVEAVTAGNTCALVGIDQYLVKAGTIADSDATESHPIVTMKySVSPVVRVAVGPKNPNDLPKLVEGLKRLSKSDPLVQCSMEES---GEHIIAG-CGELHIEICLKDLQEDYmnGAPITISDPVVSYRetVTAESSRTIISKSPNK 583
                 5779***************75222211345678888887777778888999999998776654333333356999999999999988874699*********************************999988...4445455.699***********9994224567778*****8334444555566666665 PP

  == domain 3    score: 2.1 bits;  conditional E-value: 0.036
   TIGR01393 397 eveePyvkatiivpeeylgailelcqekrgvlkk.leyldkervelvyelPlae 449
                 +++eP+  +++  pe+ +g + + +++krg++++ ++  ++   +++  lP++e
  MMETSP1137-20121227|4887_1 731 RLQEPVFMVEVQCPENAMGGVYSSINRKRGTVVEeINRPGTPLYNIKAYLPVSE 784
                 689***************************876414555555555666666665 PP

>> TIGR00503  prfC: peptide chain release factor 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.0   0.0   1.2e-16   3.4e-14      11     148 ..      19     164 ..       8     189 .. 0.77
   2 !   11.3   0.0   5.9e-05     0.017     314     457 ..     394     551 ..     381     623 .. 0.75

  Alignments for each domain:
  == domain 1    score: 50.0 bits;  conditional E-value: 1.2e-16
   TIGR00503  11 rrtfaiishpdaGkttltekvllyGnaiqeaGavkargs.qrsaksdwmemekqrGisittsv...lqfdy....rdklvnlldtpGhedfsedtyrtltavdsalmvidaakGveertrkllevt.rlrdlpiltflnkldrdird 148
                  r++++i+h d Gk+tlt+ ++   + i  + a  +r + +r+ + d     k  Gis+        +++      + l+nl+d+pGh dfs +   +l  +d al+v+d+  Gv  +t  +l  +   r  p++t +nkldr  ++
  MMETSP1137-20121227|4887_1  19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIASSAAGDTRLTdTRQDEQDRCITIKSTGISLFFKAeahYKLPPdsqgDEFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQTETVLRQAlGERIKPVIT-VNKLDRAFLE 164
                 599******************9999999888877777551456677888888889999854321113333222224679****************************************99886541678899999.7*****7653 PP

  == domain 2    score: 11.3 bits;  conditional E-value: 5.9e-05
   TIGR00503 314 aflrvvsGkyekdmklk.....hvrtgk.dvvl...sdalkllagdresveeayaGd...iiGlhnh..GtiqiGdtvtqGeklkftgipnfapelfrrlrlkdplkqkqllkGlvelseeGavqvlrslden.dlivaavGvlqfdvvvarlkeeynv 457
                 af rv sG    + k+k      v+  k d+ +    ++  ++  + esve   aG+   ++G+++    + +i d+  +  + + t   + +p +   +  k+p    +l  Gl +ls+   + v  s++e+ + i+a  G l +++  + l+e+y  
  MMETSP1137-20121227|4887_1 394 AFGRVFSGTVRTGAKVKimgpnYVQGKKdDLYIknvQRTILMMGRKTESVEAVTAGNtcaLVGIDQYlvKAGTIADSDATESHPIVTMKYSVSPVVRVAVGPKNPNDLPKLVEGLKRLSKSDPL-VQCSMEESgEHIIAGCGELHIEICLKDLQEDYMN 551
                 8889999999888888733332233344234441114555677888899**999998332456554322344566666666666777778999999999*******************987653.44588888899********************965 PP

>> TIGR00231  small_GTP: small GTP-binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.7   0.0   4.2e-19   1.2e-16       4     127 ..      20     164 ..      17     188 .. 0.86

  Alignments for each domain:
  == domain 1    score: 58.7 bits;  conditional E-value: 4.2e-19
   TIGR00231   4 ikivivGhvdvGKstLlnsllknkisiteskpgvtr.dyvteqieedGkt..........................ykvnllDTaGqedfdairrlyvreverslevvdivilvldveeglekqtkeiiheakkkgvpiilvvnKiDlkd.d 127
                 ++  +++hvd+GKstL++sl    ++i +s +g tr ++  + ++ + +t                          + +nl+D +G++df         ev++ l+v+d+++ v+d  eg+  qt+++ ++a  + ++ ++ vnK D  + +
  MMETSP1137-20121227|4887_1  20 RNMSVIAHVDHGKSTLTDSLVAAAGIIASSAAGDTRlTDTRQDEQDRCITikstgislffkaeahyklppdsqgdeFLINLIDSPGHVDF-------SSEVTAALRVTDGALVVVDCVEGVCVQTETVLRQALGERIKPVITVNKLDRAFlE 164
                 67889*************************9954441344444455555577779***********************************.......**************************************************98852 PP

>> TIGR00475  selB: selenocysteine-specific translation elongation factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.3   0.1   9.1e-16   2.7e-13       4     138 ..      23     183 ..      21     189 .. 0.81
   2 ?   -0.8   0.0      0.35     1e+02     206     271 ..     421     481 ..     394     488 .. 0.58

  Alignments for each domain:
  == domain 1    score: 47.3 bits;  conditional E-value: 9.1e-16
   TIGR00475   4 ataGHvDHGKttLlkaltgid.............adrlPeEkKRGltiD.lG....y...aylpled......kvlgliDvPGHekflknalagvggidaalLvvdadeGvkaqtkEHLavlkllgikelivvltKaDrvdeeevkevEeelkeileeeefl 138
                 ++  HvDHGK tL  +l   +             +d + +E+ R +ti   G    +   a ++l+         ++liD PGH  f +++ a++   d+al+vvd+ eGv +qt+  L+ +    ik  ++ ++K+Dr+  e+ + +E + k++ ++ e+ 
  MMETSP1137-20121227|4887_1  23 SVIAHVDHGKSTLTDSLVAAAgiiassaagdtrlTDTRQDEQDRCITIKsTGislfFkaeAHYKLPPdsqgdeFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQTETVLRQALGERIK-PVITVNKLDRAFLELQQPAEDMYKAFEKHIENV 183
                 5678*********99998766666899999999999***********953451111333334444322333346799****************************************99988888888.67788********99999999999998877665 PP

  == domain 2    score: -0.8 bits;  conditional E-value: 0.35
   TIGR00475 206 gDelvlepinkkvrvkalqaqnqsvekavAGqRialnladvdkeklkRGllilkpeepkkrvvvkl 271
                  D+l+++  n++  +  +  +  sve  +AG+  a  l ++d+  +k G  i  ++ ++++ +v +
  MMETSP1137-20121227|4887_1 421 KDDLYIK--NVQRTILMMGRKTESVEAVTAGNTCA--LVGIDQYLVKAG-TIADSDATESHPIVTM 481
                 4666666..44555556667777888888898776..468888888888.5555666666555555 PP

>> TIGR00485  EF-Tu: translation elongation factor Tu
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.1   0.0   1.1e-12   3.2e-10      10     139 ..      15     159 ..       9     170 .. 0.75
   2 !    5.2   0.0    0.0052       1.5     209     302 ..     374     470 ..     366     483 .. 0.74

  Alignments for each domain:
  == domain 1    score: 37.1 bits;  conditional E-value: 1.1e-12
   TIGR00485  10 kphv..nvgtighvdhgkttltaaittvlakegkaaakkydeidkapeekargitintahve.yetekrhy.............ahvdcpghadyvknmitgaaqmdgailvvsaadgpmpqtrehillarqvgv.pklvvflnkvd 139
                 kph   n+  i hvdhgk+tlt +++++    +++aa +    d+  +e++r iti+++ +  +  ++ hy               +d pgh d+  ++ +     dga++vv + +g+  qt     l + +g   k v+ +nk d
  MMETSP1137-20121227|4887_1  15 KPHNirNMSVIAHVDHGKSTLTDSLVAAAGIIASSAAGDTRLTDTRQDEQDRCITIKSTGISlFFKAEAHYklppdsqgdefliNLIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQTETV--LRQALGErIKPVITVNKLD 159
                 56633499******************99999999999999999*************9988763445566663333322222222469********99988888889****************9643..3333332123455556655 PP

  == domain 2    score: 5.2 bits;  conditional E-value: 0.0052
   TIGR00485 209 kpfllaiedvfsitgrgtv.vtgrvergevkvgeeveivglk..etkkttvtgvemfkklldeakagdnvgvllrgvkkeeiergqvlakpgsikph 302
                  p+++ i  ++    +g   + grv  g+v++g +v+i+g +  + kk  +   ++ + +l  ++  + v ++  g +   +   q l+k g+i   
  MMETSP1137-20121227|4887_1 374 GPLMMYISKMIPTPDKGRFyAFGRVFSGTVRTGAKVKIMGPNyvQGKKDDLYIKNVQRTILMMGRKTESVEAVTAGNTCALVGIDQYLVKAGTIADS 470
                 5778888888888888864278******************774445566666666677778888888888887777777777777777777777655 PP

>> TIGR00483  EF-1_alpha: translation elongation factor EF-1, subunit alpha
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.4   0.1   1.3e-11   3.7e-09       6     157 ..      18     164 ..      13     196 .. 0.68
   2 ?   -4.1   0.0         3   8.9e+02     246     267 ..     395     417 ..     394     422 .. 0.76

  Alignments for each domain:
  == domain 1    score: 33.4 bits;  conditional E-value: 1.3e-11
   TIGR00483   6 ehlnvafighvdsgkstlvgrllyeagaiderlle.....klkkeaeekgkasfefayvldklkeerergvtidvahkkfetdkyevtivdapghrdfiknmitgasqadaavlvvavddgelevqpqtrehvllartlgik.qlivainkmdsvnyd 157
                 +  n+++i hvd+gkstl+  l+  ag i+            +++ +++   +++ + +   +k+e    +  d      + d + + ++d+pgh df  ++ +    +d a++vv++ +g   v  qt    +l ++lg + + ++++nk+d+   +
  MMETSP1137-20121227|4887_1  18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIASSAAGdtrltDTRQDEQDR-CITIKSTGISLFFKAEAHYKLPPD-----SQGDEFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVEG---VCVQTET--VLRQALGERiKPVITVNKLDRAFLE 164
                 45699**********************9998765400000334444444.234444444444555554444443.....4788999***************9999999************9...6677754..566777755234678*****97554 PP

  == domain 2    score: -4.1 bits;  conditional E-value: 3
   TIGR00483 246 vgrvetgvlkkgekv.vfepagv 267
                  grv +g +++g kv ++ p  v
  MMETSP1137-20121227|4887_1 395 FGRVFSGTVRTGAKVkIMGPNYV 417
                 59**********99934556555 PP

>> TIGR00487  IF-2: translation initiation factor IF-2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.9   0.0    0.0032      0.95      90     110 ..      22      42 ..       5      72 .. 0.77
   2 !   24.8   0.0     6e-09   1.8e-06     136     200 ..      97     161 ..      84     174 .. 0.91

  Alignments for each domain:
  == domain 1    score: 5.9 bits;  conditional E-value: 0.0032
   TIGR00487  90 vtimGhvDhGktsLLdsirkt 110
                 + ++ hvDhGk +L ds+  +
  MMETSP1137-20121227|4887_1  22 MSVIAHVDHGKSTLTDSLVAA 42 
                 46789***********97543 PP

  == domain 2    score: 24.8 bits;  conditional E-value: 6e-09
   TIGR00487 136 kitflDtPGheaftsmrarGakvtDivvlvvaadDGvkpqtieaiehakaanvPiivainkiDkp 200
                  i ++D PGh  f+s  +   +vtD +++vv   +Gv  qt+  +  a    +  ++ +nk+D+ 
  MMETSP1137-20121227|4887_1  97 LINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQTETVLRQALGERIKPVITVNKLDRA 161
                 7999**********************************************9999999******85 PP

>> TIGR00491  aIF-2: translation initiation factor aIF-2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.0   0.1   2.6e-10   7.6e-08       7     134 ..      22     161 ..      18     191 .. 0.77

  Alignments for each domain:
  == domain 1    score: 29.0 bits;  conditional E-value: 2.6e-10
   TIGR00491   7 vavlGhvdhGkttlldkirktr..vakreaGg..itqhiGaseiPidvikrlcgdllkklkidlkiP....G....llvidtPGheaftslrkrGGaladiailvvdineGfkpqtveavnilrqlktPfvvaankidri 134
                 ++v+ hvdhGk+tl d +  ++  +a+  aG+  +t      +     ik     l+ k +++ k+P    G    + +id+PGh  f+s       ++d a++vvd +eG+  qt+  +      ++  v++ nk+dr 
  MMETSP1137-20121227|4887_1  22 MSVIAHVDHGKSTLTDSLVAAAgiIASSAAGDtrLTDTRQDEQDRCITIKSTGISLFFKAEAHYKLPpdsqGdeflINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQTETVLRQALGERIKPVITVNKLDRA 161
                 5899************9876653245555554223444444444455688888888888889999995555255423479*************************************9998777788888999*****95 PP

>> TIGR03680  eif2g_arch: translation initiation factor 2, gamma subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.2   0.3   1.3e-08   3.7e-06       7     147 ..      21     160 ..      15     185 .. 0.65
   2 ?    2.9   0.1     0.038        11     234     312 ..     396     474 ..     394     501 .. 0.79

  Alignments for each domain:
  == domain 1    score: 24.2 bits;  conditional E-value: 1.3e-08
   TIGR03680   7 niglvGhvDhGkttlvkal...tGv..........wtdthseelkrgisiklGyadaeikkceeceepeaytteekceecgsetellrkvsfvDaPGhetLmatmlsGaalmdgalLviaaneevPqpqtkehlvaleiigiknivivqnkidl 147
                 n++++ hvDhGk+tl+ +l   +G+           tdt ++e+ r i+ik   +   +k   +      y   + ++        +  + ++D+PGh  +   + +   + dgal+v++  e v   qt+  l       i + vi  nk+d 
  MMETSP1137-20121227|4887_1  21 NMSVIAHVDHGKSTLTDSLvaaAGIiassaagdtrLTDTRQDEQDRCITIKSTGISLFFKAEAH------YKLPPDSQ------GDEFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGV-CVQTETVLRQALGERI-KPVITVNKLDR 160
                 899*************988443343222222222257888888888888886555554443333......33333222......2345799**************9999**************99.7899877754333334.44666788883 PP

  == domain 2    score: 2.9 bits;  conditional E-value: 0.038
   TIGR03680 234 GslvqGklkvgdeieir.PGikvekegkteyepiltevtsleagkkkveeakPgGlvavgtkLDPaltkaDalaGqvvgk 312
                 G +  G++++g +++i  P   + k++    ++++ ++  +   +++ve ++ g + a+   +D  l+ka ++a + +++
  MMETSP1137-20121227|4887_1 396 GRVFSGTVRTGAKVKIMgPNYVQGKKDDLYIKNVQRTILMMGRKTESVEAVTAGNTCALV-GIDQYLVKAGTIADSDATE 474
                 67889**********983555555566777789*******************99988875.6899999988877665554 PP

>> TIGR03594  GTPase_EngA: ribosome-associated GTPase EngA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.5   0.0   0.00033     0.095     173     211 ..      17      55 ..       2      75 .. 0.82
   2 !   12.4   0.0   4.3e-05     0.013     252     320 ..     114     184 ..     107     190 .. 0.87

  Alignments for each domain:
  == domain 1    score: 9.5 bits;  conditional E-value: 0.00033
   TIGR03594 173 eepikiaiiGrpNvGKStLvNallgeervivsdiaGtTr 211
                 ++  ++++i     GKStL+ +l+    +i+s+ aG Tr
  MMETSP1137-20121227|4887_1  17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIASSAAGDTR 55 
                 3456899*******************************9 PP

  == domain 2    score: 12.4 bits;  conditional E-value: 4.3e-05
   TIGR03594 252 lkaieradvvllvlDategiseqDlkiaglileegkalvivvNKwDlv..kdekeleelkkeleeklkflk 320
                 + a++  d +l+v+D+ eg+  q +++++++l e    vi vNK D    + ++  e++ k +e++++ ++
  MMETSP1137-20121227|4887_1 114 TAALRVTDGALVVVDCVEGVCVQTETVLRQALGERIKPVITVNKLDRAflELQQPAEDMYKAFEKHIENVN 184
                 5677888889************************************9988888888889888888887776 PP

>> TIGR02034  CysN: sulfate adenylyltransferase, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.2   1.6e-06   0.00046      84     172 ..     100     185 ..      22     210 .. 0.74
   2 ?   -2.6   0.0       1.5   4.5e+02     237     254 ..     396     413 ..     377     424 .. 0.82

  Alignments for each domain:
  == domain 1    score: 17.2 bits;  conditional E-value: 1.6e-06
   TIGR02034  84 vadtPGheqytrnmatgastadlavllvdarkGvleqtrrhsiiasllGik.hvvlavnkidlvdydeevfeeikkdylalaeklgvsdv 172
                 + d+PGh+ +  +++++   +d a+++vd  +Gv  qt   +++   lG + + v++vnk+d    +    +  ++ y+a+ +++++ +v
  MMETSP1137-20121227|4887_1 100 LIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQTE--TVLRQALGERiKPVITVNKLDRAFLEL--QQPAEDMYKAFEKHIENVNV 185
                 47************************************7..5677778866345889*****765443..33445556666666655554 PP

  == domain 2    score: -2.6 bits;  conditional E-value: 1.5
   TIGR02034 237 GtiasGsvkvGdevvvlp 254
                 G + sG+v++G +v+++ 
  MMETSP1137-20121227|4887_1 396 GRVFSGTVRTGAKVKIMG 413
                 8999**********9985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (849 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       170  (0.0414432); expected 82.0 (0.02)
Passed bias filter:                      138  (0.0336421); expected 82.0 (0.02)
Passed Vit filter:                        23  (0.00560702); expected 4.1 (0.001)
Passed Fwd filter:                        14  (0.00341297); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.82u 0.16s 00:00:00.98 Elapsed: 00:00:00.86
# Mc/sec: 1303.01
//
Query:       MMETSP1137-20121227|4888_1  [L=882]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (882 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        92  (0.0224281); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.54u 0.16s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 2839.38
//
Query:       MMETSP1137-20121227|4890_1  [L=143]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (143 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       112  (0.0273038); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.15s 00:00:00.34 Elapsed: 00:00:00.25
# Mc/sec: 754.98
//
Query:       MMETSP1137-20121227|4891_1  [L=106]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (106 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        62  (0.0151146); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.15s 00:00:00.29 Elapsed: 00:00:00.24
# Mc/sec: 582.95
//
Query:       MMETSP1137-20121227|4892_1  [L=372]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (372 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        79  (0.0192589); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.18s 00:00:00.44 Elapsed: 00:00:00.44
# Mc/sec: 1115.91
//
Query:       MMETSP1137-20121227|4893_1  [L=1362]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      8e-06   22.8   0.4     0.0067   13.1   0.0    3.0  3  TIGR00054 TIGR00054: RIP metalloprotease RseP
    9.7e-05   19.2   0.0    0.00018   18.3   0.0    1.3  1  TIGR02928 TIGR02928: orc1/cdc6 family replication initiation protein
  ------ inclusion threshold ------
      0.018   11.8   0.1      0.018   11.8   0.0    3.5  4  TIGR02037 degP_htrA_DO: peptidase Do
        4.6    4.1  20.5         11    2.8  14.2    1.5  1  TIGR01554 major_cap_HK97: phage major capsid protein, HK97 family


Domain annotation for each model (and alignments):
>> TIGR00054  TIGR00054: RIP metalloprotease RseP
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.0     0.018        18     207     261 ..    1048    1102 ..    1027    1134 .. 0.69
   2 !    4.8   0.1    0.0022       2.3     186     252 ..    1130    1199 ..    1055    1218 .. 0.55
   3 !   13.1   0.0   6.5e-06    0.0067     196     246 ..    1289    1339 ..    1255    1347 .. 0.80

  Alignments for each domain:
  == domain 1    score: 1.8 bits;  conditional E-value: 0.018
   TIGR00054  207 sdvvdnspae.kaGlkeGDkilkidgeklkswrdlvklvkenpeksleikveRnge 261 
                   +v + +  + +  l+ GD+i+ +dg++l  +   + ++ + ++++l ++ +R  +
  MMETSP1137-20121227|4893_1 1048 VEVEPGGSVHaQGELQYGDQIVAVDGKPLGGKMLKDVIIPK-KKHELIVRYSRMSS 1102
                  555555444303459************99877655555554.55667777777664 PP

  == domain 2    score: 4.8 bits;  conditional E-value: 0.0022
   TIGR00054  186 nitleeekelkelgpkielvlsdvvdnspaekaG.lkeGDkilkidgeklkswr..dlvklvkenpeksl 252 
                  ++++  e +  +lg  i+++ + v   ++   aG lk GDki+ +d++ l+ +r  d+v+ v    +++l
  MMETSP1137-20121227|4893_1 1130 DVVISREPGTGRLGFGIDPMNTVVEVDPQGPVAGqLKVGDKIVAVDDVLLNFKRfiDVVNSVDWTASHKL 1199
                  5555555555555555666655555555555666699999999999765543331155555555455555 PP

  == domain 3    score: 13.1 bits;  conditional E-value: 6.5e-06
   TIGR00054  196 kelgpkielvlsdvvdnspaekaGlkeGDkilkidgeklkswrdlvklvke 246 
                     g ++++++++v   s+ae aGl +GD +l+++g    s  ++v ++++
  MMETSP1137-20121227|4893_1 1289 NVEGTSVQPIIKKVDVGSKAETAGLVPGDVVLSVNGISGLSNFQVVEMLRK 1339
                  445677999***************************999999999999887 PP

>> TIGR02928  TIGR02928: orc1/cdc6 family replication initiation protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.0   1.7e-07   0.00018      29      76 ..      89     137 ..      85     163 .. 0.80

  Alignments for each domain:
  == domain 1    score: 18.3 bits;  conditional E-value: 1.7e-07
   TIGR02928  29 kalkpilrgsrpsnvliyGktGtGKtavtkkvlkeleeaaeekdvr.vs 76 
                 +a   +l++s++++v+i+G++G GKt ++k +l+ l+e ++ ++++ ++
  MMETSP1137-20121227|4893_1  89 SAYTGMLQNSHSQSVIISGESGAGKTETAKILLQYLAEVSSGSSNSdLH 137
                 567789****************************999987754333244 PP

>> TIGR02037  degP_htrA_DO: peptidase Do
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -6.5   3.6         4   4.1e+03     328     354 ..     751     778 ..     708     841 .. 0.46
   2 ?    2.2   0.0     0.015        15     260     291 ..    1044    1076 ..    1024    1103 .. 0.81
   3 ?    0.4   0.0     0.052        53     263     334 ..    1152    1221 ..    1144    1255 .. 0.72
   4 ?   11.8   0.0   1.8e-05     0.018     261     289 ..    1297    1325 ..    1257    1341 .. 0.74

  Alignments for each domain:
  == domain 1    score: -6.5 bits;  conditional E-value: 4
   TIGR02037 328 keaeeekasseks.ekkellglsvadls 354
                 +++e++k+++e++  +k ++ ++  + +
  MMETSP1137-20121227|4893_1 751 AAEESKKKEAEEQdRQKRFQRARQLSFE 778
                 2222222222211123333322222222 PP

  == domain 2    score: 2.2 bits;  conditional E-value: 0.015
   TIGR02037  260 GalvaevlkgspAe.kaGlkaGDvilkvngkki 291 
                    ++ ev +g++ + ++ l+ GD i++v+gk++
  MMETSP1137-20121227|4893_1 1044 DNIIVEVEPGGSVHaQGELQYGDQIVAVDGKPL 1076
                  567899999988861566************986 PP

  == domain 3    score: 0.4 bits;  conditional E-value: 0.052
   TIGR02037  263 vaevlkgspAekaGlkaGDvilkvngkkiksaadlreaigtlkpgkkvklkilRkgkekeikvtlkeaeeek 334 
                  v ev +++p + + lk+GD i++v++  + +++ +   ++++    + kl+i R      +  + k ++e++
  MMETSP1137-20121227|4893_1 1152 VVEVDPQGPVA-GQLKVGDKIVAVDDVLL-NFKRFIDVVNSVDWTASHKLRIARLRGASGVPANNKGKREKE 1221
                  66788888875.78**********99765.578888888888888888888888776666666666444444 PP

  == domain 4    score: 11.8 bits;  conditional E-value: 1.8e-05
   TIGR02037  261 alvaevlkgspAekaGlkaGDvilkvngk 289 
                   ++ +v  gs Ae+aGl  GDv+l+vng 
  MMETSP1137-20121227|4893_1 1297 PIIKKVDVGSKAETAGLVPGDVVLSVNGI 1325
                  47999999*******************95 PP

>> TIGR01554  major_cap_HK97: phage major capsid protein, HK97 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8  14.2     0.011        11      11     121 ..     719     823 ..     695     838 .. 0.45

  Alignments for each domain:
  == domain 1    score: 2.8 bits;  conditional E-value: 0.011
   TIGR01554  11 lakelkkltedekeeeaeeekkekda.lkaeidkleaeierleea....aaeeeakeaasgeagkeeeeeeeakeeaaeafraylrrgddalaee...........akalstgtdsdgGylvPeels 121
                 +a+elk l+e++k+ee+e++++++++  ++++++ e++ +++ee+    + +++++   +++ag++++eeee                      +            ++ ++++++dg  ++P e+ 
  MMETSP1137-20121227|4893_1 719 RAEELKRLAEAKKREEEEAKRRAEEEaEREKLAAEESKKKEAEEQdrqkRFQRARQLSFERRAGRKKREEEE----------------------AkkgdgsaaaaaVATTAAAVAADGSEVAPSETY 823
                 344555555554444444444433221222222222222222222322222222222222222222222222......................123333322113333333444566666666654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1362 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       466  (0.113603); expected 82.0 (0.02)
Passed bias filter:                      174  (0.0424183); expected 82.0 (0.02)
Passed Vit filter:                        40  (0.00975134); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 1.12u 0.21s 00:00:01.33 Elapsed: 00:00:00.89
# Mc/sec: 2019.88
//
Query:       MMETSP1137-20121227|4895_1  [L=209]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (209 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        82  (0.0199902); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.13s 00:00:00.32 Elapsed: 00:00:00.32
# Mc/sec: 862.05
//
Query:       MMETSP1137-20121227|4896_1  [L=364]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.011   12.3   0.1      0.014   11.9   0.1    1.2  1  TIGR02733 desat_CrtD: C-3',4' desaturase CrtD
       0.11    7.9  46.1       0.14    7.5  31.9    1.2  1  TIGR00927 2A1904: K+-dependent Na+/Ca+ exchanger


Domain annotation for each model (and alignments):
>> TIGR02733  desat_CrtD: C-3',4' desaturase CrtD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.1   6.9e-06     0.014     270     362 ..     111     204 ..      72     220 .. 0.82

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 6.9e-06
   TIGR02733 270 vvdsrkkekeevkaddvvanlpaqsllelleeaalskgyrkrlkklpepsGalvlylavkkaalpvdcpp.hlqflsdeqGslfvsvskegdgr 362
                 + ++ + + ++  a++v ++   ++   + +e+a++ +  k  + l +p+Ga+ ly + k+++++++ p+  ++ + +  G  + s+s+e  ++
  MMETSP1137-20121227|4896_1 111 CLKEPTGSGRKSLAEKVATKKQKTEKKAAAKEKAKPAKSSKAADGLKRPPGAFFLYCSNKRQKVKEENPDaDVKQVAKILGEKWASISQERKDK 204
                 5556677777788888888887777778888999999999*************************99985379999999**********98665 PP

>> TIGR00927  2A1904: K+-dependent Na+/Ca+ exchanger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5  31.9     7e-05      0.14     734     874 ..     204     345 ..      69     362 .. 0.54

  Alignments for each domain:
  == domain 1    score: 7.5 bits;  conditional E-value: 7e-05
   TIGR00927 734 dkgdqeedpgsqgdvaeaeakgertgeeaeaeteaegekdees..ggeaeqegeseekaeeeseGeieaerkgedegegeieakeaevkGee..eeeeveaeeeteaeGdedegeieaeeeGeekededegeieakeevevegde 874
                 +  +q  +  ++ d+++a+  g++ ++ a+++++a+ +k++ s  +g +++e+e+e+k eee+eGe +++ +++++g+ e   ++++ + e+  ee+e  ++ee e+ Gde+e+e++ae++  ++e+++++ +e  ee++++ d+
  MMETSP1137-20121227|4896_1 204 KYKQQAAELKADYDKKKAKLAGKSPQGGAKTSAKAPPKKPKASpaKGTKRKEEEEEDKEEEEDEGEKDGDDEEDKDGDEEK--EDGDEEKEDggEEKEDGDDEEKEDGGDEEEKEGDAEKGAAKEEEKEDTPAEQ-EEGDKKVDD 345
                 111222233334444455555555555555555555555554411344456666666666666666666543333333333..3322222220022333344445555556666655544333333332333333.555555553 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (364 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       231  (0.056314); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                        22  (0.00536324); expected 4.1 (0.001)
Passed Fwd filter:                        10  (0.00243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.20s 00:00:00.72 Elapsed: 00:00:00.89
# Mc/sec: 539.82
//
Query:       MMETSP1137-20121227|4897_1  [L=182]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (182 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        54  (0.0131643); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.15s 00:00:00.32 Elapsed: 00:00:00.27
# Mc/sec: 889.70
//
Query:       MMETSP1137-20121227|4898_1  [L=259]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (259 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        87  (0.0212092); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.15s 00:00:00.38 Elapsed: 00:00:00.51
# Mc/sec: 670.30
//
Query:       MMETSP1137-20121227|4899_1  [L=445]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (445 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.16s 00:00:00.47 Elapsed: 00:00:00.34
# Mc/sec: 1727.50
//
Query:       MMETSP1137-20121227|4901_1  [L=67]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (67 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        31  (0.00755729); expected 82.0 (0.02)
Passed bias filter:                       29  (0.00706972); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.12s 00:00:00.24 Elapsed: 00:00:00.72
# Mc/sec: 122.82
//
Query:       MMETSP1137-20121227|4902_1  [L=286]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.1e-06   25.7   0.1    1.5e-06   25.3   0.1    1.1  1  TIGR01941 nqrF: NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit
    0.00025   18.0   0.1    0.00029   17.8   0.1    1.1  1  TIGR00225 prc: C-terminal processing peptidase
     0.0015   15.9   0.1      0.004   14.5   0.1    1.7  1  TIGR03198 pucE: xanthine dehydrogenase E subunit
     0.0019   16.2   0.0     0.0044   15.0   0.0    1.7  1  TIGR02007 fdx_isc: ferredoxin, 2Fe-2S type, ISC system
     0.0027   14.5   0.2     0.0032   14.3   0.1    1.1  1  TIGR02037 degP_htrA_DO: peptidase Do
  ------ inclusion threshold ------
      0.011   13.5   0.1      0.023   12.4   0.1    1.5  1  TIGR03193 4hydroxCoAred: 4-hydroxybenzoyl-CoA reductase, gamma subunit


Domain annotation for each model (and alignments):
>> TIGR01941  nqrF: NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.3   0.1   2.1e-09   1.5e-06      33     121 ..     191     284 ..     185     286 .] 0.75

  Alignments for each domain:
  == domain 1    score: 25.3 bits;  conditional E-value: 2.1e-09
   TIGR01941  33 tikinddeeksltveaGdkllntlaskgifiss......acGGggscgqcrvrvvegggeilptekshisk.reakegwrlscqvkvkedlelele 121
                 ti i+    ++++v++G+ l ++l+++   + s       cGG g cg c v +      + p   +   k + +    rl+cqv v+ d+ ++l+
  MMETSP1137-20121227|4902_1 191 TIAIEG--GQAIEVPTGQLLRKVLQDNKQELYSlmgkmtNCGGVGQCGTCAVDIDAKERALSPRTAAEDRKlKGKPSSRRLACQVVVQGDMFVKLQ 284
                 444444..899*************9988766543333338*************988877777655444444145557889***********99886 PP

>> TIGR00225  prc: C-terminal processing peptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.1   4.2e-07   0.00029      62     123 ..      95     158 ..      73     231 .. 0.83

  Alignments for each domain:
  == domain 1    score: 17.8 bits;  conditional E-value: 4.2e-07
   TIGR00225  62 d..eivivsplegsPAekag.ikpgDkIikvdgksvagmelddavelirGkkgtkvkleieragk 123
                 +    ++ s++eg+ A  +  +  gD ++++dgk+v +   d+++e + G  g  v l +er+ +
  MMETSP1137-20121227|4902_1  95 GgaGAEVASLIEGGSALSSNlVFEGDVVVSIDGKDVSSTGFDEIME-MLGDAGEIVDLVLERQVT 158
                 44456899************8899*******************987.56*********9999853 PP

>> TIGR03198  pucE: xanthine dehydrogenase E subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.1   5.9e-06     0.004      20      56 ..     209     246 ..     188     254 .. 0.73

  Alignments for each domain:
  == domain 1    score: 14.5 bits;  conditional E-value: 5.9e-06
   TIGR03198  20 akrladllreeltltgtkvsc.gigrcgacavlvdgkv 56 
                  k l d  +e ++l g    c g+g+cg+cav +d k 
  MMETSP1137-20121227|4902_1 209 RKVLQDNKQELYSLMGKMTNCgGVGQCGTCAVDIDAKE 246
                 3446677777789****9999459***********985 PP

>> TIGR02007  fdx_isc: ferredoxin, 2Fe-2S type, ISC system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   6.5e-06    0.0044      14      97 ..     196     281 ..     186     286 .] 0.80

  Alignments for each domain:
  == domain 1    score: 15.0 bits;  conditional E-value: 6.5e-06
   TIGR02007  14 eGavveakeGetildvalkaeieieh......acekscacttchvivrkGfdsleeasekeedlldkawGleaesrlscqavvadedlvv 97 
                  G+++e+ +G+ + +v+++++ e+ +       c ++  c tc v +     +l+  +  e+  l    G  ++ rl+cq+vv   d+ v
  MMETSP1137-20121227|4902_1 196 GGQAIEVPTGQLLRKVLQDNKQELYSlmgkmtNCGGVGQCGTCAVDIDAKERALSPRTAAEDRKL---KGKPSSRRLACQVVVQG-DMFV 281
                 578999999999999999999998642222227999999*****************999998755...6999999*****99865.5554 PP

>> TIGR02037  degP_htrA_DO: peptidase Do
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.1   4.6e-06    0.0032     259     317 ..      97     156 ..      75     222 .. 0.73

  Alignments for each domain:
  == domain 1    score: 14.3 bits;  conditional E-value: 4.6e-06
   TIGR02037 259 kGalvaevlkgspAekaGlk.aGDvilkvngkkiksaa..dlreaigtlkpgkkvklkilRk 317
                  Ga va++++g++A ++ l  +GDv+++++gk+++s+   ++ e++g   +g+ v+l + R+
  MMETSP1137-20121227|4902_1  97 AGAEVASLIEGGSALSSNLVfEGDVVVSIDGKDVSSTGfdEIMEMLG--DAGEIVDLVLERQ 156
                 6999**********99997549************9864114444444..4566666666665 PP

>> TIGR03193  4hydroxCoAred: 4-hydroxybenzoyl-CoA reductase, gamma subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.1   3.4e-05     0.023      20      56 ..     211     248 ..     191     264 .. 0.80

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 3.4e-05
   TIGR03193  20 llvdylrdvvgltgvkqgcdg.gecgactvlvdgeprl 56 
                 +l d  +++  l g  + c g g+cg+c+v +d + r 
  MMETSP1137-20121227|4902_1 211 VLQDNKQELYSLMGKMTNCGGvGQCGTCAVDIDAKERA 248
                 46678889999********9989**********98764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (286 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       105  (0.0255973); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.26u 0.18s 00:00:00.44 Elapsed: 00:00:00.75
# Mc/sec: 503.32
//
Query:       MMETSP1137-20121227|4903_1  [L=396]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (396 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       158  (0.0385178); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.16s 00:00:00.44 Elapsed: 00:00:00.56
# Mc/sec: 916.98
//
Query:       MMETSP1137-20121227|4906_1  [L=125]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (125 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        68  (0.0165773); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.18s 00:00:00.35 Elapsed: 00:00:00.73
# Mc/sec: 226.01
//
Query:       MMETSP1137-20121227|4907_1  [L=567]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.7e-63  212.8   0.0      7e-34  115.2   0.0    2.2  2  TIGR00054 TIGR00054: RIP metalloprotease RseP
    3.5e-06   24.1   0.0    5.1e-06   23.6   0.0    1.2  1  TIGR00225 prc: C-terminal processing peptidase
     0.0004   17.2   0.0    0.00059   16.7   0.0    1.2  1  TIGR02037 degP_htrA_DO: peptidase Do
     0.0009   16.8   0.0     0.0018   15.9   0.0    1.4  1  TIGR02134 transald_staph: transaldolase
     0.0014   15.7   0.0     0.0022   15.0   0.0    1.2  1  TIGR02038 protease_degS: periplasmic serine peptidase DegS
      0.002   14.0   0.1     0.0032   13.3   0.1    1.2  1  TIGR03900 prc_long_Delta: putative carboxyl-terminal-processing protease, deltaproteobacterial


Domain annotation for each model (and alignments):
>> TIGR00054  TIGR00054: RIP metalloprotease RseP
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  115.2   0.0     1e-36     7e-34       6     161 ..     110     275 ..     106     291 .. 0.89
   2 !  103.8   0.0   2.9e-33     2e-30     204     417 ..     243     470 ..     238     472 .. 0.83

  Alignments for each domain:
  == domain 1    score: 115.2 bits;  conditional E-value: 1e-36
   TIGR00054   6 ilasilalavlifvHElGHfllArlcgvkverFsiGfGkkllkfkkneTeyaisliplGGYvklk......ldkeee...vkvaetdkdafkkksvlqkviiiaagplanlifailvyi.lvsligvknfevkkvieeldknsialeakiedgdeilsvdgkkikd 161
                 +la + +l+ ++++HE GHf++Ar +g+ +++Fs+GfG+++lk +  +  ya++++plGGYv ++       d+e +    +v  +d++++++++ +q+++++ ag++anl+++  +++   ++ig +     + +  + ++s a++a+i++gd++  ++gk++++
  MMETSP1137-20121227|4907_1 110 QLAGVAVLGGIVAIHEAGHFTAARSQGMLINEFSVGFGPAILKSEADNITYALRALPLGGYVSFPvaglpeGDEESSysqMVVDPDDPNLLENRPFMQQALVVCAGVIANLMLSWALLFtSSAVIGTQVQMEPPTVMRVLPKSPAASAGIVPGDRLVDINGKNLAG 275
                 5788************************************************************999987645554442345667899**************************9888868889999977778899**************************9876 PP

  == domain 2    score: 103.8 bits;  conditional E-value: 2.9e-33
   TIGR00054 204 lvlsdvvdnspaekaGlkeGDkilkidgeklkswrd.....lvklvken..peksleikveRngetlslklvpeakgk.igvglspklkkle..vssgilealakavektedivklilkl....lskLitgslklkelsGpvgIvkgasssaklgivyllqflallSinLgiiNllplPvLDGgqllfllieaikgkplsekvqafvyriGvallllLmvlalfnDlk 417
                 + +  v + spa+ aG+ +GD+++ i+g++l    d      ++ +++    ++ +   v R ge +s+++ p a    ig+ +  + ++    v+  + +a + a++ +     ++l +    l+ +  gs+  + lsGp+gI+k+a+ +a++    ll+f+a+lS+nL++ N lp+P LDG qll+l+iea++g +l+ +++++v  +  +lll++    l+ D+ 
  MMETSP1137-20121227|4907_1 243 PTVMRVLPKSPAASAGIVPGDRLVDINGKNLAGTFDepltrAIYSIRNSldRGEPVRAVVLRAGERVSVTVPPTAGAStIGIEMAQDRSEFGgrVRLPPAQAATIAASDVYSACRAVLASlgpaLGSVFGGSVAESGLSGPLGIAKTAGDIAQSRPELLLNFAAILSVNLAVFNSLPIPGLDGFQLLVLAIEALRGDRLPDRTKSIVNGVATVLLLYVASSTLVADVG 470
                 56778999*********************997544323222789999853367899999************999954436666666666555997777777777777766666666665511116788899999************************************************************************************9999999975 PP

>> TIGR00225  prc: C-terminal processing peptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.6   0.0   7.5e-09   5.1e-06      53     127 ..     234     311 ..     227     330 .. 0.78

  Alignments for each domain:
  == domain 1    score: 23.6 bits;  conditional E-value: 7.5e-09
   TIGR00225  53 iGiqvqmeddeivivsplegsPAekagikpgDkIikvdgksvagm...elddavelirG..kkgtkvkleieragkkktl 127
                 iG+qvqme    +++ +l +sPA+ agi pgD+++ ++gk+ ag     l  a+  ir    +g  v+  ++rag++  +
  MMETSP1137-20121227|4907_1 234 IGTQVQMEPP--TVMRVLPKSPAASAGIVPGDRLVDINGKNLAGTfdePLTRAIYSIRNslDRGEPVRAVVLRAGERVSV 311
                 999**99987..6899************************8877522257777777776334677777777777766555 PP

>> TIGR02037  degP_htrA_DO: peptidase Do
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0   8.6e-07   0.00059     262     326 ..     244     314 ..     231     347 .. 0.80

  Alignments for each domain:
  == domain 1    score: 16.7 bits;  conditional E-value: 8.6e-07
   TIGR02037 262 lvaevlkgspAekaGlkaGDvilkvngkkiksa..adlreaigt....lkpgkkvklkilRkgkekeikvt 326
                  v +vl++spA++aG+  GD ++++ngk++  +  + l++ai +    l  g+ v+  +lR g++++++v 
  MMETSP1137-20121227|4907_1 244 TVMRVLPKSPAASAGIVPGDRLVDINGKNLAGTfdEPLTRAIYSirnsLDRGEPVRAVVLRAGERVSVTVP 314
                 5899*************************986522448888865111145799999999999999998885 PP

>> TIGR02134  transald_staph: transaldolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   2.6e-06    0.0018      70     178 ..     292     406 ..     272     417 .. 0.80

  Alignments for each domain:
  == domain 1    score: 15.9 bits;  conditional E-value: 2.6e-06
   TIGR02134  70 leemekeaekiasyGnnvfvkipvtntkGestiplikklsadg..iklnv..tavftieqvkkvveal.tegvpaivsvfaGriadtGv.dplplmkealkivrqkegvellwas 178
                 l+  e   +++ + G+ v v +p t+      i + +  s+ g  ++l    +a ++ + v   + a+ +   pa+ svf G +a++G   pl + k a  i+++++ + l +a+
  MMETSP1137-20121227|4907_1 292 LDRGEPVRAVVLRAGERVSVTVPPTAGASTIGIEMAQDRSEFGgrVRLPPaqAATIAASDVYSACRAVlASLGPALGSVFGGSVAESGLsGPLGIAKTAGDIAQSRPELLLNFAA 406
                 5556666677788999****99998888888888999999977335664322566667888888988615557***************736***************999888775 PP

>> TIGR02038  protease_degS: periplasmic serine peptidase DegS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   3.2e-06    0.0022     276     344 ..     239     313 ..     227     316 .. 0.77

  Alignments for each domain:
  == domain 1    score: 15.0 bits;  conditional E-value: 3.2e-06
   TIGR02038 276 dlrgivvtevdPngPaaragllvrdvilkldnkevisa..eelmdrvaelr....Pgskvlvtvlrkgkqlelpv 344
                 +++   v+ v P++Paa ag+ + d ++ +++k+  ++  e l+  +  +r     g+ v  +vlr g+++++ v
  MMETSP1137-20121227|4907_1 239 QMEPPTVMRVLPKSPAASAGIVPGDRLVDINGKNLAGTfdEPLTRAIYSIRnsldRGEPVRAVVLRAGERVSVTV 313
                 5556678899************************99863345666666665222268999*******99988766 PP

>> TIGR03900  prc_long_Delta: putative carboxyl-terminal-processing protease, deltaproteobacterial
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   0.1   4.7e-06    0.0032     153     196 ..     243     289 ..     232     313 .. 0.70

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 4.7e-06
   TIGR03900 153 ltVlrvlpetPAaraGlkakDrivkidees...tvnmdlndavdrlR 196
                  tV+rvlp++PAa aG+   Dr+v i+ +    t + +l  a+  +R
  MMETSP1137-20121227|4907_1 243 PTVMRVLPKSPAASAGIVPGDRLVDINGKNlagTFDEPLTRAIYSIR 289
                 49************************976322255555555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (567 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        95  (0.0231594); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.43u 0.14s 00:00:00.57 Elapsed: 00:00:00.57
# Mc/sec: 1290.31
//
Query:       MMETSP1137-20121227|4908_1  [L=367]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (367 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        71  (0.0173086); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.17s 00:00:00.45 Elapsed: 00:00:00.37
# Mc/sec: 1309.19
//
Query:       MMETSP1137-20121227|4909_1  [L=443]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (443 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        91  (0.0221843); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.12s 00:00:00.43 Elapsed: 00:00:00.43
# Mc/sec: 1359.79
//
Query:       MMETSP1137-20121227|4910_1  [L=298]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (298 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       140  (0.0341297); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.13s 00:00:00.37 Elapsed: 00:00:00.36
# Mc/sec: 1092.58
//
Query:       MMETSP1137-20121227|4911_1  [L=258]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (258 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        76  (0.0185275); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.14s 00:00:00.35 Elapsed: 00:00:00.37
# Mc/sec: 920.36
//
Query:       MMETSP1137-20121227|4912_1  [L=222]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (222 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       113  (0.0275475); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.12s 00:00:00.32 Elapsed: 00:00:00.34
# Mc/sec: 861.81
//
Query:       MMETSP1137-20121227|4913_1  [L=409]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (409 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       102  (0.0248659); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.16s 00:00:00.47 Elapsed: 00:00:00.34
# Mc/sec: 1587.75
//
Query:       MMETSP1137-20121227|4914_1  [L=137]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (137 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        49  (0.0119454); expected 82.0 (0.02)
Passed bias filter:                       32  (0.00780107); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.11s 00:00:00.27 Elapsed: 00:00:00.27
# Mc/sec: 669.72
//
Query:       MMETSP1137-20121227|4915_1  [L=312]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (312 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        52  (0.0126767); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.14s 00:00:00.37 Elapsed: 00:00:00.28
# Mc/sec: 1470.74
//
Query:       MMETSP1137-20121227|4916_1  [L=282]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (282 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       222  (0.0541199); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.11s 00:00:00.37 Elapsed: 00:00:00.37
# Mc/sec: 1005.97
//
Query:       MMETSP1137-20121227|4917_1  [L=316]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (316 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        56  (0.0136519); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.16s 00:00:00.40 Elapsed: 00:00:00.56
# Mc/sec: 744.80
//
Query:       MMETSP1137-20121227|4918_1  [L=243]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (243 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        72  (0.0175524); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.12s 00:00:00.34 Elapsed: 00:00:00.33
# Mc/sec: 971.92
//
Query:       MMETSP1137-20121227|4919_1  [L=44]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (44 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        51  (0.012433); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.15s 00:00:00.25 Elapsed: 00:00:00.57
# Mc/sec: 100.13
//
Query:       MMETSP1137-20121227|4920_1  [L=82]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (82 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.28
# Mc/sec: 373.21
//
Query:       MMETSP1137-20121227|4921_1  [L=193]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (193 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       137  (0.0333983); expected 82.0 (0.02)
Passed bias filter:                      104  (0.0253535); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.15s 00:00:00.34 Elapsed: 00:00:00.30
# Mc/sec: 849.13
//
Query:       MMETSP1137-20121227|4922_1  [L=180]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (180 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        55  (0.0134081); expected 82.0 (0.02)
Passed bias filter:                       44  (0.0107265); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.15s 00:00:00.35 Elapsed: 00:00:00.37
# Mc/sec: 642.11
//
Query:       MMETSP1137-20121227|4923_1  [L=172]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.012   13.1   0.2      0.014   12.9   0.2    1.2  1  TIGR00290 MJ0570_dom: MJ0570-related uncharacterized domain
      0.017   12.4   0.1      0.018   12.4   0.1    1.3  1  TIGR00289 TIGR00289: TIGR00289 family protein


Domain annotation for each model (and alignments):
>> TIGR00290  MJ0570_dom: MJ0570-related uncharacterized domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.2   6.6e-06     0.014      64     106 ..      32      75 ..      11     116 .. 0.85

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 6.6e-06
   TIGR00290  64 lnteateedeveeLkellkklkveavvvGailse.yqktrierv 106
                 ++ + + e+ veeL e + +l+v+++vvG +  e ++ tri +v
  MMETSP1137-20121227|4923_1  32 IELADVSEKLVEELDEEVDRLEVDQLVVGHVHAEgEEETRIPSV 75 
                 45567899***********************9874667888777 PP

>> TIGR00289  TIGR00289: TIGR00289 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.1   8.6e-06     0.018      65     108 ..      33      77 ..      10     137 .. 0.85

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 8.6e-06
   TIGR00289  65 ytaGeeekevedlagtlekldveavviGaveseyq.ksridkvcr 108
                   a + ek ve+l +++++l+v+ +v+G v++e     ri +v +
  MMETSP1137-20121227|4923_1  33 ELADVSEKLVEELDEEVDRLEVDQLVVGHVHAEGEeETRIPSVDE 77 
                 567889************************998641567777655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (172 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       152  (0.0370551); expected 82.0 (0.02)
Passed bias filter:                      128  (0.0312043); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.19u 0.17s 00:00:00.36 Elapsed: 00:00:00.53
# Mc/sec: 428.34
//
Query:       MMETSP1137-20121227|4924_1  [L=339]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (339 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       147  (0.0358362); expected 82.0 (0.02)
Passed bias filter:                      110  (0.0268162); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.18s 00:00:00.43 Elapsed: 00:00:00.74
# Mc/sec: 604.65
//
Query:       MMETSP1137-20121227|4925_1  [L=621]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00011   17.8  32.9    0.00016   17.3  22.8    1.1  1  TIGR02168 SMC_prok_B: chromosome segregation protein SMC
     0.0011   14.5  29.5     0.0017   13.9  20.4    1.2  1  TIGR02169 SMC_prok_A: chromosome segregation protein SMC
  ------ inclusion threshold ------
        4.5    3.3  12.0        6.1    2.8   8.3    1.2  1  TIGR00934 2a38euk: potassium uptake protein, Trk family


Domain annotation for each model (and alignments):
>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3  22.8   1.2e-07   0.00016     750     947 ..     230     414 ..     172     435 .. 0.46

  Alignments for each domain:
  == domain 1    score: 17.3 bits;  conditional E-value: 1.2e-07
   TIGR02168 750 rlaqlekeleeleeereeleeeleeaeeelkeaeeeieeleaeieqlkeelka.lrealseleaeltelkeeaaek.eerleslekeiaalekeleeleeqieeleeeiesleaeieeleeeleeleeeleellkekasleealaelreeleelseelrelekkvkelereleelreklaqlelrleeleveiaelqerl 947
                 +l++ e +  e+++e e+++++ ee++ee+ + e+eie+l++e +q+++e++   + +l+ l+++ + ++++++++  +++e  ++ +a+++  +e+l+ +i+++e ei +++++ ++ ++ lee e+el++l  +kas+e++l+e+  e e++++e  e   ++ + + ++e++++ +++++              +++
  MMETSP1137-20121227|4925_1 230 DLSEVEGRTVEATQELEAKKKQAEETKEETRRLEAEIEALKEERRQQNAEHERkMKHELTLLKQKERLERRRVEDEyLNAIETAREGKARATAAAEDLKGEIKSKESEINAMKQSGADEKQ-LEEKETELKKLRTAKASVENQLHEALFEHETTKKETAERTWHNGQVTSRVEARNDVVEEIQ--------------KQF 414
                 3333333334444444444444444444444444444444444444433333202223333333333222222222023333333344444444444444444444444444444444333.3444444444444444444444444444444444444444444444444444444444444..............333 PP

>> TIGR02169  SMC_prok_A: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9  20.4   1.2e-06    0.0017     368     840 ..     239     390 ..     194     438 .. 0.38

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 1.2e-06
   TIGR02169 368 eelraeleevdkeaaelreelkelkekleklkeelnelkreldr.......lleelkrleeel..aelkaelerieekiaeleeeleelaeeikkaeqkleqlkedlekaekelrklkeeleklekelselerelaeleaqakaseeesreskaveevlkasieGvlGtvaqLgkveerYalAiEvAaGnrlnnvVVeddavAkeaIellkerkagratFLPLnkmrskerdlsilaedGvidfavdlvefdekyepvvkyvlgdTlvvedleaarrlmgkfRlVtLeGellekSGaitGGsraersgelvsasekeklerlrerleeLereleslqselrriekrldelssklsdaekkieeiekeleqleeeeeklkerleeleeklseleeeleekkeelkeleaeieeleeklaklkealedleaelseekieeieeelekleeevsriearleeieaelnklelekelleeeiqelq 840
                  e  +ele+++k+a+e++ee+  l+ ++e+lkee+ + + e++r       ll +++rle ++   e  +++e ++e +a   +++e+l+ eik +e +++ +k+  +  ek+l+++++el+kl     ++e++l+e+  +++++++e                                                                                                                                                                                                                                                                                                                                          +e  
  MMETSP1137-20121227|4925_1 239 VEATQELEAKKKQAEETKEETRRLEAEIEALKEERRQQNAEHERkmkheltLLKQKERLERRRveDEYLNAIETAREGKARATAAAEDLKGEIKSKESEINAMKQSGA-DEKQLEEKETELKKLRTAKASVENQLHEALFEHETTKKET-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AERT 390
                 222222222222222222222222222222222222222222220000000111111111111001122333333333333333333333333333333333322221.2222333333333333333333333333322222222222.........................................................................................................................................................................................................................................................................................................................................2222 PP

>> TIGR00934  2a38euk: potassium uptake protein, Trk family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   8.3    0.0045       6.1     171     301 ..     242     393 ..     165     470 .. 0.47

  Alignments for each domain:
  == domain 1    score: 2.8 bits;  conditional E-value: 0.0045
   TIGR00934 171 rtqvslprksakrddfqeklfsGelvkrdeqdsvhsdqnsedvk.............sdtsadesisslrfdeskekkkstrvpsekfakrresrdidpedlyrsimmlqekheata......kirdk.......iseanslaaesdeessesrriq 301
                   +    +k+a++ + + + ++ e++  +e+ + +  ++++ +k                ++de+++   +++++e k ++ +++e+ + +++s++ +++ +++s +  ++ +e ++                  ++ea   + ++++e++e +  +
  MMETSP1137-20121227|4925_1 242 TQELEAKKKQAEETKEETRRLEAEIEALKEERRQQNAEHERKMKheltllkqkerleRRRVEDEYLN--AIETAREGKARATAAAEDLKGEIKSKESEINAMKQSGADEKQLEEKETelkklrT---AkasvenqLHEALFEHETTKKETAERTWHN 393
                 1112222222222233333333333333333222222222222233333333333333333333333..3444444444444444444444444444444444444333322222221222220...122211122222111111111111111111 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (621 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       430  (0.104827); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                        19  (0.00463189); expected 4.1 (0.001)
Passed Fwd filter:                         8  (0.00195027); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.62u 0.17s 00:00:00.79 Elapsed: 00:00:00.77
# Mc/sec: 1064.48
//
Query:       MMETSP1137-20121227|4927_1  [L=69]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (69 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        48  (0.0117016); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.13s 00:00:00.27 Elapsed: 00:00:00.27
# Mc/sec: 337.31
//
Query:       MMETSP1137-20121227|4928_1  [L=388]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (388 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        56  (0.0136519); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.17s 00:00:00.43 Elapsed: 00:00:00.39
# Mc/sec: 1313.12
//
Query:       MMETSP1137-20121227|4929_1  [L=390]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (390 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        55  (0.0134081); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.14s 00:00:00.40 Elapsed: 00:00:00.42
# Mc/sec: 1225.61
//
Query:       MMETSP1137-20121227|4930_1  [L=815]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.9e-50  162.1   0.0    1.5e-08   32.1   0.0   11.7 13  TIGR00756 PPR: pentatricopeptide repeat domain
  ------ inclusion threshold ------
        2.2    4.9   5.4        1.3    5.6   0.0    3.0  4  TIGR02928 TIGR02928: orc1/cdc6 family replication initiation protein


Domain annotation for each model (and alignments):
>> TIGR00756  PPR: pentatricopeptide repeat domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.2   0.0    0.0028       5.7       7      27 ..      56      76 ..      55      79 .. 0.88
   2 !   19.3   0.0   8.8e-08   0.00018       2      29 ..      83     110 ..      82     112 .. 0.93
   3 !   24.7   0.0   1.8e-09   3.6e-06       2      34 ..     168     200 ..     167     201 .. 0.95
   4 !   12.5   0.0   1.3e-05     0.026       7      35 .]     208     236 ..     205     236 .. 0.94
   5 !   32.1   0.0   7.4e-12   1.5e-08       1      35 []     237     271 ..     237     271 .. 0.97
   6 ?    2.6   0.0     0.018        37       1      34 [.     272     305 ..     272     306 .. 0.92
   7 !   13.2   0.0   7.6e-06     0.016       2      35 .]     308     341 ..     307     341 .. 0.95
   8 !   13.8   0.0   5.2e-06     0.011       2      27 ..     343     368 ..     342     373 .. 0.93
   9 !   11.7   0.0   2.4e-05      0.05       1      34 [.     395     428 ..     395     429 .. 0.93
  10 !    9.0   0.0   0.00017      0.34       1      28 [.     430     457 ..     430     459 .. 0.85
  11 ?   -3.7   0.0       1.8   3.8e+03      13      23 ..     479     489 ..     478     490 .. 0.86
  12 ?    0.2   0.0      0.11   2.2e+02       6      17 ..     539     550 ..     536     554 .. 0.81
  13 ?   -3.1   0.0       1.2   2.4e+03      18      33 ..     667     683 ..     666     683 .. 0.77

  Alignments for each domain:
  == domain 1    score: 5.2 bits;  conditional E-value: 0.0028
   TIGR00756  7 isglckagrveeAlelfdeMk 27
                i ++++a+++  Al+l++++ 
  MMETSP1137-20121227|4930_1 56 IAAHARAKNWQAALRLLRSLD 76
                789*************99875 PP

  == domain 2    score: 19.3 bits;  conditional E-value: 8.8e-08
   TIGR00756   2 tyntlisglckagrveeAlelfdeMker 29 
                  yn+ i++++++ ++  Alelf+eM+++
  MMETSP1137-20121227|4930_1  83 HYNSAIHACARSTQWTSALELFQEMLDQ 110
                 5************************986 PP

  == domain 3    score: 24.7 bits;  conditional E-value: 1.8e-09
   TIGR00756   2 tyntlisglckagrveeAlelfdeMkergivPd 34 
                 ++n+ i ++++a ++e Al+l++eM+ +g  P+
  MMETSP1137-20121227|4930_1 168 CFNAAITACGRAHDWEAALSLLREMQQQGPAPN 200
                 79***************************9998 PP

  == domain 4    score: 12.5 bits;  conditional E-value: 1.3e-05
   TIGR00756   7 isglckagrveeAlelfdeMkergivPda 35 
                 i++++ ++r+  Al l++e +++g++Pd+
  MMETSP1137-20121227|4930_1 208 INAMGISRRWQTALALLQEAMDHGLEPDV 236
                 99*************************96 PP

  == domain 5    score: 32.1 bits;  conditional E-value: 7.4e-12
   TIGR00756   1 vtyntlisglckagrveeAlelfdeMkergivPda 35 
                 vty+++is+++k+g++  Al++++eM e+g+ P++
  MMETSP1137-20121227|4930_1 237 VTYSSVISACSKSGEWQQALRILREMAEAGVAPNE 271
                 7********************************96 PP

  == domain 6    score: 2.6 bits;  conditional E-value: 0.018
   TIGR00756   1 vtyntlisglckagrveeAlelfdeMkergivPd 34 
                 v+y++ is++  +g++  A +l+ eM + g++P 
  MMETSP1137-20121227|4930_1 272 VSYSAAISACEPSGEWVMAQRLLLEMPKVGLSPG 305
                 689999999999******************9995 PP

  == domain 7    score: 13.2 bits;  conditional E-value: 7.6e-06
   TIGR00756   2 tyntlisglckagrveeAlelfdeMkergivPda 35 
                 +y++ i + +k g ++eA++l+ +M++ g+ P++
  MMETSP1137-20121227|4930_1 308 AYCSAIAAASKGGAWREAIKLLLRMRRVGVAPNT 341
                 7999****************************96 PP

  == domain 8    score: 13.8 bits;  conditional E-value: 5.2e-06
   TIGR00756   2 tyntlisglckagrveeAlelfdeMk 27 
                 t+n+ i++++k+ ++  A+ l+++M+
  MMETSP1137-20121227|4930_1 343 TCNAAIDACAKSAEWQAAIGLLRRML 368
                 9************************7 PP

  == domain 9    score: 11.7 bits;  conditional E-value: 2.4e-05
   TIGR00756   1 vtyntlisglckagrveeAlelfdeMkergivPd 34 
                 +++n+++ ++ +ag+++ Al + ++M ++ i+ +
  MMETSP1137-20121227|4930_1 395 ISFNSVLAACDRAGEWRTALAVREQMDAARISAN 428
                 58*************************9999887 PP

  == domain 10    score: 9.0 bits;  conditional E-value: 0.00017
   TIGR00756   1 vtyntlisglckagrveeAlelfdeMke 28 
                 vt ntl+s+l++ag++  Al l++ +++
  MMETSP1137-20121227|4930_1 430 VTDNTLLSALARAGQWQPALALLQAIQR 457
                 577*************999999887665 PP

  == domain 11    score: -3.7 bits;  conditional E-value: 1.8
   TIGR00756  13 agrveeAlelf 23 
                 ag+++ Al+l 
  MMETSP1137-20121227|4930_1 479 AGQWRAALRLV 489
                 79******986 PP

  == domain 12    score: 0.2 bits;  conditional E-value: 0.11
   TIGR00756   6 lisglckagrve 17 
                  i+++++ag++ 
  MMETSP1137-20121227|4930_1 539 AIRACARAGELP 550
                 59*******975 PP

  == domain 13    score: -3.1 bits;  conditional E-value: 1.2
   TIGR00756  18 eAlelfdeMker.givP 33 
                 e ++l  +M+++ g vP
  MMETSP1137-20121227|4930_1 667 ESRSLVARMRRQyGYVP 683
                 56789999*88768877 PP

>> TIGR02928  TIGR02928: orc1/cdc6 family replication initiation protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.1      0.14   2.8e+02     220     254 ..     120     158 ..     107     195 .. 0.75
   2 ?   -1.2   0.0     0.073   1.5e+02     221     253 ..     231     264 ..     222     272 .. 0.73
   3 ?    5.6   0.0   0.00063       1.3     222     249 ..     302     330 ..     286     372 .. 0.83
   4 ?   -1.0   0.1     0.063   1.3e+02     224     248 ..     464     489 ..     457     492 .. 0.80

  Alignments for each domain:
  == domain 1    score: -2.1 bits;  conditional E-value: 0.14
   TIGR02928 220 gvlddeviplvaalaaqeh....GdaRkAidlLreagei 254
                  + + +vi +++ +aa  h       R A+ lLr+  e+
  MMETSP1137-20121227|4930_1 120 RAPSPDVISFTSTMAALLHapnsAASRAALTLLRRIQEY 158
                 55567888887777776665544778*******987665 PP

  == domain 2    score: -1.2 bits;  conditional E-value: 0.073
   TIGR02928 221 vlddeviplvaalaaqeh.GdaRkAidlLreage 253
                  l+ +v+   + ++a ++ G+  +A+++Lre +e
  MMETSP1137-20121227|4930_1 231 GLEPDVVTYSSVISACSKsGEWQQALRILREMAE 264
                 46677777777777755559999*******8665 PP

  == domain 3    score: 5.6 bits;  conditional E-value: 0.00063
   TIGR02928 222 lddeviplvaalaaqehGda.RkAidlLr 249
                 l+ +v   ++a+aa ++G a R+Ai+lL 
  MMETSP1137-20121227|4930_1 302 LSPGVFAYCSAIAAASKGGAwREAIKLLL 330
                 788999********9997666*****984 PP

  == domain 4    score: -1.0 bits;  conditional E-value: 0.063
   TIGR02928 224 deviplvaalaaqeh.GdaRkAidlL 248
                 d ++p + a aa e+ G  R A++l 
  MMETSP1137-20121227|4930_1 464 DLAVPICTAAAACETaGQWRAALRLV 489
                 6788999888776655*******996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (815 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       153  (0.0372989); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.15s 00:00:00.65 Elapsed: 00:00:01.02
# Mc/sec: 1054.62
//
Query:       MMETSP1137-20121227|4932_1  [L=58]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        72  (0.0175524); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.37
# Mc/sec: 206.90
//
Query:       MMETSP1137-20121227|4933_1  [L=982]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.7e-80  268.6   0.1    2.6e-79  264.6   0.0    2.1  1  TIGR01982 UbiB: 2-polyprenylphenol 6-hydroxylase
    5.1e-09   33.7   0.0    9.7e-09   32.8   0.0    1.4  1  TIGR03724 arch_bud32: Kae1-associated kinase Bud32


Domain annotation for each model (and alignments):
>> TIGR01982  UbiB: 2-polyprenylphenol 6-hydroxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  264.6   0.0   1.3e-82   2.6e-79      46     427 ..     214     617 ..     186     624 .. 0.88

  Alignments for each domain:
  == domain 1    score: 264.6 bits;  conditional E-value: 1.3e-82
   TIGR01982  46 eslgerlrlaleelGPifiKlGQvlstRaDllpeeiaeeLslLqdkvppfdlkaarkvieaelgkpveelFaefeekPlAaASiaQvhkAvlve.gkeVavKvlRPgiekkieadikllellaklvekllpe...akrlrptevvkefektlkeEldlrlEaanaselkenfknd..kklivPevyweltservltlewidgipvsdleklkeaGldlkalaenlvesflkqvlrdgfFHaDlHpGNilvakd...gkiialDfGivgrlseeerrylaeillgflerdykrvaevhleagyvpsdtdlaeleqairavgepiv........gkplkeis..........igklLaklfkitekfelevqpeLlLLqKtlltvEGvgrqldpdldlwkvaepvvkklik 427
                   l++  r+ +e+lGP+++K+GQ++s R+D+lp+e ++eL  Lqd v  fd + a k+ie+elg+p++e+F++f+ +P AaAS+aQv++A+l e g+ VavKv+RPg+++ +++d+ +l+++a++ + l+++    +r +++ + +e +    +Eld++ Ea+n +++++ + ++  ++++vP+vy +lt++r+l+ +widg ++sd    +      ++l + + e fl q l+ gfFH+D+HpGN++  +d   gk++++DfG+v+++ +e+   ++  ++ + ++dy+++++  + +  +p+d + a+    + +   p+v        ++ lk++           + ++ ++++ + ++   +++p ++LL+++++t+EG++ ++dpd  l+  a p+v + + 
  MMETSP1137-20121227|4933_1 214 AGLAKDARERIEKLGPTYVKMGQMMSVRPDVLPQEALNELVALQDGVEGFDSQIAVKMIEQELGRPLDEVFDDFSMEPAAAASLAQVYRARLREsGEWVAVKVQRPGVQALVSKDLYVLRRAAEVYQGLVSRfapQQRTDYVALLNEWAVGFYTELDFQNEASNMKRMQQVLLDSsvTDVVVPRVYDSLTTRRLLVSQWIDGKKLSDCSPEEV-----RELIKVGQECFLVQLLQAGFFHSDPHPGNLIRPNDqsiGKLALIDFGLVAQVRQEDMDSMVSAIIHLANKDYAALVDDFISLKILPADCNRAKVVPLMDKALSPYVkgggakryEEELKKMYgfeesgavggFQAMTQDMLTVLNDIPFSIPPYFALLARAVVTLEGLALSVDPDYGLVIEAYPFVARKLL 617
                 45667778899*********************************************************************************862699**************************8776655411146799999999999999*******************988722589***************************987655.....58999999***********************999989999**************************************************999887777777766522222222677888733333344334678999************************************************98665 PP

>> TIGR03724  arch_bud32: Kae1-associated kinase Bud32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.8   0.0   4.7e-12   9.7e-09      35     142 ..     369     482 ..     366     502 .. 0.79

  Alignments for each domain:
  == domain 1    score: 32.8 bits;  conditional E-value: 4.7e-12
   TIGR03724  35 lDeklrkeRtrkEarllseakkagvntPvvydvdpeekkivmeyiegkklkdlleekelellkevGel..vgklHkagivhgDlttsNiivkdd....klyliDfGLgkk.skev 142
                 lD +  ++ +++  ++l +   ++v +P vyd  + +  +v + i+gkkl+d+  e+  + l +vG+   + +l +ag+ h D+++ N+i  +d    kl liDfGL  + ++e 
  MMETSP1137-20121227|4933_1 369 LDFQNEASNMKRMQQVLLDSSVTDVVVPRVYDSLTTRRLLVSQWIDGKKLSDCSPEEV-RELIKVGQEcfLVQLLQAGFFHSDPHPGNLIRPNDqsigKLALIDFGLVAQvRQED 482
                 66666667777888899999999*******************************9955.5555788862267899***************96541222689*****965414444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (982 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       127  (0.0309605); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.61u 0.16s 00:00:00.77 Elapsed: 00:00:01.07
# Mc/sec: 1211.34
//
Query:       MMETSP1137-20121227|4934_1  [L=54]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        24  (0.0058508); expected 82.0 (0.02)
Passed bias filter:                       21  (0.00511945); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.24
# Mc/sec: 296.98
//
Query:       MMETSP1137-20121227|4935_1  [L=114]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-36  123.8   0.0    1.5e-36  123.7   0.0    1.0  1  TIGR02188 Ac_CoA_lig_AcsA: acetate--CoA ligase
    4.8e-15   53.0   0.0    5.1e-15   52.9   0.0    1.0  1  TIGR02316 propion_prpE: propionate--CoA ligase
    4.9e-11   39.6   0.0    5.7e-11   39.4   0.0    1.1  1  TIGR03098 ligase_PEP_1: acyl-CoA ligase (AMP-forming), exosortase A-associated
    3.5e-07   27.1   0.0    4.1e-07   26.9   0.0    1.1  1  TIGR02262 benz_CoA_lig: benzoate-CoA ligase family
    1.5e-06   24.8   0.0    1.7e-06   24.6   0.0    1.0  1  TIGR03205 pimA: dicarboxylate--CoA ligase PimA
    2.7e-06   23.6   0.0    3.1e-06   23.4   0.0    1.0  1  TIGR01217 ac_ac_CoA_syn: acetoacetate-CoA ligase
    2.3e-05   20.7   0.0    2.7e-05   20.5   0.0    1.1  1  TIGR02275 DHB_AMP_lig: (2,3-dihydroxybenzoyl)adenylate synthase
    5.2e-05   20.0   0.0    6.1e-05   19.7   0.0    1.1  1  TIGR03208 cyc_hxne_CoA_lg: cyclohexanecarboxylate-CoA ligase
     0.0018   14.8   0.0     0.0022   14.5   0.0    1.1  1  TIGR02372 4_coum_CoA_lig: 4-coumarate--CoA ligase


Domain annotation for each model (and alignments):
>> TIGR02188  Ac_CoA_lig_AcsA: acetate--CoA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  123.7   0.0   3.2e-39   1.5e-36     524     628 ..       2     110 ..       1     111 [. 0.92

  Alignments for each domain:
  == domain 1    score: 123.7 bits;  conditional E-value: 3.2e-39
   TIGR02188 524 heavaeaavvgvpdeikgeaivafvvlkegveedeeelekelkklvrkeigpiakpdkilvveelPktRsGkimRRllrkiaege.....ellgdvstledpsvveelke 628
                 h++vae+avvg+p+ +kge i+++v+l+eg+e++e+ l++ l+ + r+eig++a+pd i+++++lPktRsGkimRR+lrkia++      + lgd+stl++p+vv++l++
  MMETSP1137-20121227|4935_1   2 HPSVAESAVVGYPHPVKGEGIYIYVTLNEGEEPSED-LRQALRLQCRSEIGAFAAPDVIHWAPALPKTRSGKIMRRILRKIAANGkevsaDDLGDTSTLAEPAVVDQLIS 110
                 99********************************95.*********************************************975312234689*************975 PP

>> TIGR02316  propion_prpE: propionate--CoA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.9   0.0   1.1e-17   5.1e-15     517     623 ..       2     109 ..       1     114 [] 0.84

  Alignments for each domain:
  == domain 1    score: 52.9 bits;  conditional E-value: 1.1e-17
   TIGR02316 517 haavaevavvgvkdelkgqvavafailkeadsvedaddahalekelmalvesqlgavarparvyvvaalpktrsgkllrraiqava......egrdpgdlttiddpaaleqvr 623
                 h++vae avvg   ++kg+    +++l+e +   +   +  l ++l     s++ga+a p  ++   alpktrsgk++rr ++ +a       + d gd +t+ +pa ++q+ 
  MMETSP1137-20121227|4935_1   2 HPSVAESAVVGYPHPVKGEGIYIYVTLNEGE---E--PSEDLRQALRLQCRSEIGAFAAPDVIHWAPALPKTRSGKIMRRILRKIAangkevSADDLGDTSTLAEPAVVDQLI 109
                 9*************************99544...3..334466677778899******************************999732222124689************9975 PP

>> TIGR03098  ligase_PEP_1: acyl-CoA ligase (AMP-forming), exosortase A-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.4   0.0   1.3e-13   5.7e-11     442     516 ..       3      80 ..       1      81 [. 0.87

  Alignments for each domain:
  == domain 1    score: 39.4 bits;  conditional E-value: 1.3e-13
   TIGR03098 442 glvaeavvlgvpdpelGqaivlvvvesdkeeld...kkellkelraelPaymvPakielrealprnanGkiDrkalaa 516
                 + vae +v+g p+p  G+ i + v+ +++ee +   +++l+ ++r e+ a+  P  i++  alp++ +Gki r++l++
  MMETSP1137-20121227|4935_1   3 PSVAESAVVGYPHPVKGEGIYIYVTLNEGEEPSedlRQALRLQCRSEIGAFAAPDVIHWAPALPKTRSGKIMRRILRK 80 
                 679*********************96555543312368999********************************99975 PP

>> TIGR02262  benz_CoA_lig: benzoate-CoA ligase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.9   0.0     9e-10   4.1e-07     429     507 ..       2      80 ..       1      81 [. 0.96

  Alignments for each domain:
  == domain 1    score: 26.9 bits;  conditional E-value: 9e-10
   TIGR02262 429 heavleaavvgaededglikpkafvvlrsgadidealeeelkehvkdklapykyprwievvddlpktatGkiqrfklre 507
                 h++v e+avvg   + +      +v l++g++ +e l++ l+   +++++ +  p  i+    lpkt +Gki r  lr+
  MMETSP1137-20121227|4935_1   2 HPSVAESAVVGYPHPVKGEGIYIYVTLNEGEEPSEDLRQALRLQCRSEIGAFAAPDVIHWAPALPKTRSGKIMRRILRK 80 
                 99**********99988888899***************************************************99996 PP

>> TIGR03205  pimA: dicarboxylate--CoA ligase PimA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.6   0.0   3.7e-09   1.7e-06     466     541 .]       2      79 ..       1      79 [. 0.93

  Alignments for each domain:
  == domain 1    score: 24.6 bits;  conditional E-value: 3.7e-09
   TIGR03205 466 lpavqevivigipdqyrgeaakafvklregakpfs..ldelraflagklgkhelpvavelvdelprtsvgklsrhelr 541
                 +p+v e  v+g p   +ge    +v l+eg +p     ++lr + +  +g    p  + +   lp+t  gk+ r  lr
  MMETSP1137-20121227|4935_1   2 HPSVAESAVVGYPHPVKGEGIYIYVTLNEGEEPSEdlRQALRLQCRSEIGAFAAPDVIHWAPALPKTRSGKIMRRILR 79 
                 8********************************753247899999****************************99887 PP

>> TIGR01217  ac_ac_CoA_syn: acetoacetate-CoA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.4   0.0   6.8e-09   3.1e-06     546     630 ..       4      89 ..       2     108 .. 0.89

  Alignments for each domain:
  == domain 1    score: 23.4 bits;  conditional E-value: 6.8e-09
   TIGR01217 546 eveeslvigqeqedgeervvlfvklasGatldealvkeikdairaglsprhvpskiievagiprtlsGkkvevavkdvv.aGkpve 630
                  v+es v+g  ++  +e + ++v l +G + +e+l + ++ + r+++ +   p+ i   + +p+t sGk++   ++++  +Gk v 
  MMETSP1137-20121227|4935_1   4 SVAESAVVGYPHPVKGEGIYIYVTLNEGEEPSEDLRQALRLQCRSEIGAFAAPDVIHWAPALPKTRSGKIMRRILRKIAaNGKEVS 89 
                 699********************************************************************998888752577776 PP

>> TIGR02275  DHB_AMP_lig: (2,3-dihydroxybenzoyl)adenylate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   0.0   5.9e-08   2.7e-05     452     526 .]       2      79 ..       1      79 [. 0.92

  Alignments for each domain:
  == domain 1    score: 20.5 bits;  conditional E-value: 5.9e-08
   TIGR02275 452 hpavidaalvsledellGekscafivvkdedlkavqlrrflrea...GlaeyklPdrvelidslPltavGkidkkalr 526
                 hp+v ++a+v  + ++ Ge   +++ +++ +  + +lr+ lr +    + ++  Pd ++   +lP+t  Gki ++ lr
  MMETSP1137-20121227|4935_1   2 HPSVAESAVVGYPHPVKGEGIYIYVTLNEGEEPSEDLRQALRLQcrsEIGAFAAPDVIHWAPALPKTRSGKIMRRILR 79 
                 9****************************99999*****999652226999**********************99998 PP

>> TIGR03208  cyc_hxne_CoA_lg: cyclohexanecarboxylate-CoA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.0   1.3e-07   6.1e-05     462     537 ..       2      79 ..       1      80 [. 0.85

  Alignments for each domain:
  == domain 1    score: 19.7 bits;  conditional E-value: 1.3e-07
   TIGR03208 462 hpavaqvaivaypderlgeracavvvlktga..sldfaalveflkaqkvalqyiperlvvrdalpatpagkiqkfrlr 537
                 hp+va+ a+v+yp    ge +  +v+l++g   s d  +      + ++     p+ +    alp+t +gki +  lr
  MMETSP1137-20121227|4935_1   2 HPSVAESAVVGYPHPVKGEGIYIYVTLNEGEepSEDLRQALRLQCRSEIGAFAAPDVIHWAPALPKTRSGKIMRRILR 79 
                 9*****************************822345555555556778999999******************987776 PP

>> TIGR02372  4_coum_CoA_lig: 4-coumarate--CoA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.0   4.9e-06    0.0022     331     385 ..      18      73 ..       2      74 .. 0.81

  Alignments for each domain:
  == domain 1    score: 14.5 bits;  conditional E-value: 4.9e-06
   TIGR02372 331 dGerLkafivvaedade.eeleaeLrataaehLpaparPddlrfgteLPrtaaGkl 385
                 +Ge +  +++  e+ ++ e+l++ Lr +   ++ a a Pd +  + +LP+t+ Gk+
  MMETSP1137-20121227|4935_1  18 KGEGIYIYVTLNEGEEPsEDLRQALRLQCRSEIGAFAAPDVIHWAPALPKTRSGKI 73 
                 56667777777777775267***********************************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (114 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        94  (0.0229157); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         9  (0.00219405); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.19u 0.17s 00:00:00.36 Elapsed: 00:00:00.56
# Mc/sec: 268.69
//
Query:       MMETSP1137-20121227|4937_1  [L=319]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        4.4    2.7  32.3        7.2    2.0  22.4    1.2  1  TIGR02168 SMC_prok_B: chromosome segregation protein SMC


Domain annotation for each model (and alignments):
>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0  22.4    0.0017       7.2     237     454 ..      89     308 ..      83     315 .. 0.64

  Alignments for each domain:
  == domain 1    score: 2.0 bits;  conditional E-value: 0.0017
   TIGR02168 237 lkeeleeleeelkeaeeeleeleaelkeleeeleelrlekseleeeleelqkelqelkaeisrleqeieilkerleqlekeleeleeqleeleskkeeleeelaeleeeleel.keelesleaeleeaeaeleelesrleeleeeleelrsevaeleeqla....slnaelerleaeleqleerrerlkqeieelekkleeaeaelkelqeeleeleeeleel 454
                 + +++e++e+el++a+ ++++++ael+ +e +le ++le++++e e+e+++kel+el a   r++ ++  l  r ++l  +  +l + + +++    + +++ a+l++ + +  +    ++++++e+a+++ ee+ s + +l++ele+ ++e  +l + +a    ++++e+ rl+ e  +     +++k+e+ +l+++l +++ae + lq++l+++    +++
  MMETSP1137-20121227|4937_1  89 EARRRETAEAELDSAAARRAAADAELASIERDLEAVQLEHHKMELEKEKAEKELKELMA---RFKLRKSLLHWRHRKLTLSFRALITIVFRDRILAAQGAKASADLTAAMMKDeMDVAVAARQKAEAAKRKSEEMLSXELALKKELETDSRECEKLFSHEAgkqlAAEEEQARLKGEGADKITLDSKEKEEVLALAMQLAQFKAESEVLQQQLKRKTGSTAQT 308
                 45678889999999999999999999999999999999999999999999999887765...55555556666666666666666655555555444444444444444444313333455566666667777777777777777777777766554333311003333333444444444444466778888888899999999999998888877666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (319 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       345  (0.0841053); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.18s 00:00:00.52 Elapsed: 00:00:00.79
# Mc/sec: 532.97
//
Query:       MMETSP1137-20121227|4938_1  [L=316]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (316 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        56  (0.0136519); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.13s 00:00:00.36 Elapsed: 00:00:00.36
# Mc/sec: 1158.57
//
Query:       MMETSP1137-20121227|4939_1  [L=83]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (83 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        28  (0.00682594); expected 82.0 (0.02)
Passed bias filter:                       27  (0.00658216); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.26
# Mc/sec: 421.35
//
Query:       MMETSP1137-20121227|4940_1  [L=141]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (141 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        62  (0.0151146); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.15s 00:00:00.30 Elapsed: 00:00:00.22
# Mc/sec: 845.93
//
Query:       MMETSP1137-20121227|4941_1  [L=195]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (195 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        89  (0.0216967); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.11s 00:00:00.30 Elapsed: 00:00:00.35
# Mc/sec: 735.37
//
Query:       MMETSP1137-20121227|4942_1  [L=78]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (78 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        34  (0.00828864); expected 82.0 (0.02)
Passed bias filter:                       31  (0.00755729); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.11s 00:00:00.25 Elapsed: 00:00:00.24
# Mc/sec: 428.96
//
Query:       MMETSP1137-20121227|4943_1  [L=341]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (341 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        71  (0.0173086); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.16s 00:00:00.41 Elapsed: 00:00:00.67
# Mc/sec: 671.77
//
Query:       MMETSP1137-20121227|4944_1  [L=416]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (416 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        76  (0.0185275); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.16s 00:00:00.44 Elapsed: 00:00:00.51
# Mc/sec: 1076.62
//
Query:       MMETSP1137-20121227|4945_1  [L=703]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (703 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       164  (0.0399805); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.49u 0.10s 00:00:00.59 Elapsed: 00:00:00.72
# Mc/sec: 1288.73
//
Query:       MMETSP1137-20121227|4946_1  [L=307]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (307 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        83  (0.020234); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.13s 00:00:00.38 Elapsed: 00:00:00.37
# Mc/sec: 1095.15
//
Query:       MMETSP1137-20121227|4947_1  [L=506]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.2e-34  115.9   0.0    5.2e-24   82.7   0.0    2.3  2  TIGR00225 prc: C-terminal processing peptidase
    4.1e-27   92.4   0.1    1.7e-17   60.5   0.0    2.4  3  TIGR03900 prc_long_Delta: putative carboxyl-terminal-processing protease, deltaproteobacterial


Domain annotation for each model (and alignments):
>> TIGR00225  prc: C-terminal processing peptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.9   0.0   1.5e-11   3.1e-08     162     213 ..     250     302 ..     193     337 .. 0.82
   2 !   82.7   0.0   2.5e-27   5.2e-24     231     314 ..     384     468 ..     373     483 .. 0.88

  Alignments for each domain:
  == domain 1    score: 30.9 bits;  conditional E-value: 1.5e-11
   TIGR00225 162 sehtaedvkkalkklekkkikglilDLRgNpGGllqeavelarlflkkgk.iv 213
                 se +++ + + l++le+++  gl++DLR+NpGG+++ea++ a  fl +   i+
  MMETSP1137-20121227|4947_1 250 SEASTDMLSDELRRLERDGCTGLVIDLRNNPGGMIREAMHQATFFLAQPSaII 302
                 5666777899************************************9866433 PP

  == domain 2    score: 82.7 bits;  conditional E-value: 2.5e-27
   TIGR00225 231 kqklklplvvlvdrgsASAsEilagAlkdnkravivGektfGKGtvQqvrelndgsglkvTiakyytpngksiqk.kGiepdiei 314
                 + +l++plvvlvdrg+AS +E++a+Al+dn+ra+i+Ge t GKG++Q++++l +g  lk+Ti  y++pn + + k +G+epd+  
  MMETSP1137-20121227|4947_1 384 RLMLAKPLVVLVDRGTASSAELFAAALHDNGRALIMGEPTLGKGLIQRTFSLRNGGLLKLTIGEYLRPNKQRVVKgVGLEPDLSC 468
                 556699***********************************************9999************98765439*****975 PP

>> TIGR03900  prc_long_Delta: putative carboxyl-terminal-processing protease, deltaproteobacterial
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0      0.16   3.2e+02     589     639 ..      96     148 ..      88     176 .. 0.69
   2 !   29.5   0.0   1.9e-11     4e-08     203     303 ..     199     304 ..     183     339 .. 0.75
   3 !   60.5   0.0   8.3e-21   1.7e-17     322     413 ..     387     477 ..     363     504 .. 0.83

  Alignments for each domain:
  == domain 1    score: -3.3 bits;  conditional E-value: 0.16
   TIGR03900 589 lkrvraltesdknllderE..llfGaippGesksakvklklpkdalsrvDelt 639
                 l+ v +l++ ++  ld++E  ++fG+++p  +++   +  l ++++  vD l 
  MMETSP1137-20121227|4947_1  96 LEEVFGLVAGQHYGLDQHEwdFVFGQVEPQLERATASEEALGAALTRLVDALG 148
                 66667777777778888765589999999988888777777777777777664 PP

  == domain 2    score: 29.5 bits;  conditional E-value: 1.9e-11
   TIGR03900 203 vtitvrReGldeakrleleRavikvesVeaklLegn......vGyvrl..ktFsantteeleaalqdlrskaqlkGlVlDlRgNpGGLLeqAievsdkFlsqGtiVstv 303
                 v++ v+R+  ++  +++l+R         +++L         v y+    +  s+ +t  l + l+ l++++  +GlV+DlR+NpGG++ +A++ +  Fl+q   ++t 
  MMETSP1137-20121227|4947_1 199 VVLHVQRG--EQSTQVTLHRLAAWSSRAPGRVLRLSdgaggfVEYISSgcAASSEASTDMLSDELRRLERDG-CTGLVIDLRNNPGGMIREAMHQATFFLAQPSAIITY 304
                 66666666..56666666666555555555655443345555666654436778999999************.***************************997766664 PP

  == domain 3    score: 60.5 bits;  conditional E-value: 8.3e-21
   TIGR03900 322 akvPvvvlVdegSASAsEiVaGalknlDRaviiGrqtFGKGsVqvlrdatsadksaLKLtiAqYltpGD.vsiqevGvvPDielvPvkvdeee 413
                   +P+vvlVd+g AS +E+ a al+++ Ra+i+G  t GKG +q  +     +   LKLti +Yl p   + +++vG+ PD+  v +   ++ 
  MMETSP1137-20121227|4947_1 387 LAKPLVVLVDRGTASSAELFAAALHDNGRALIMGEPTLGKGLIQRTFS--LRNGGLLKLTIGEYLRPNKqRVVKGVGLEPDLSCVATPSADYV 477
                 468******************************************999..778889***********86266899*******98877666554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (506 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       125  (0.0304729); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.17s 00:00:00.57 Elapsed: 00:00:00.98
# Mc/sec: 681.49
//
Query:       MMETSP1137-20121227|4949_1  [L=745]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   1.2e-204  678.9   0.0   1.6e-204  678.6   0.0    1.1  1  TIGR00136 gidA: tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
    4.1e-13   46.7   0.3      4e-10   36.9   0.0    2.2  2  TIGR00137 gid_trmFO: tRNA:m(5)U-54 methyltransferase
    2.7e-07   28.4   0.9    5.1e-07   27.5   0.6    1.5  1  TIGR02032 GG-red-SF: geranylgeranyl reductase family
    1.1e-05   21.2   0.9    1.8e-05   20.5   0.6    1.2  1  TIGR01372 soxA: sarcosine oxidase, alpha subunit family
    6.9e-05   19.4   1.9    0.00011   18.7   0.2    1.9  2  TIGR03140 AhpF: alkyl hydroperoxide reductase, F subunit
    7.2e-05   19.2   3.3     0.0001   18.6   2.3    1.1  1  TIGR03997 mycofact_OYE_2: mycofactocin system FadH/OYE family oxidoreductase 2
    0.00013   18.7   0.5    0.00013   18.7   0.4    1.4  2  TIGR01350 lipoamide_DH: dihydrolipoyl dehydrogenase
    0.00015   18.9   0.0    0.00025   18.2   0.0    1.2  1  TIGR03169 Nterm_to_SelD: pyridine nucleotide-disulfide oxidoreductase family protein
    0.00044   16.9   0.8    0.00067   16.3   0.5    1.2  1  TIGR02028 ChlP: geranylgeranyl reductase
    0.00087   16.2   0.5     0.0013   15.6   0.4    1.2  1  TIGR02023 BchP-ChlP: geranylgeranyl reductase
      0.001   15.4   0.6     0.0016   14.8   0.4    1.2  1  TIGR01812 sdhA_frdA_Gneg: succinate dehydrogenase or fumarate reductase, flavoprotein subunit
     0.0018   15.0   0.5     0.0029   14.3   0.4    1.3  1  TIGR01292 TRX_reduct: thioredoxin-disulfide reductase
     0.0036   13.9   1.2      0.006   13.2   0.8    1.3  1  TIGR01813 flavo_cyto_c: flavocytochrome c
     0.0063   13.7   3.7       0.01   13.0   2.6    1.3  1  TIGR03467 HpnE: squalene-associated FAD-dependent desaturase
      0.008   12.8   0.3      0.013   12.1   0.2    1.2  1  TIGR01377 soxA_mon: sarcosine oxidase, monomeric form
  ------ inclusion threshold ------
      0.011   12.6   0.6      0.019   11.9   0.4    1.4  1  TIGR03197 MnmC_Cterm: tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain
      0.012   11.6   1.0      0.021   10.8   0.7    1.3  1  TIGR01816 sdhA_forward: succinate dehydrogenase, flavoprotein subunit
      0.012   12.6   0.1      0.021   11.9   0.1    1.3  1  TIGR00292 TIGR00292: thiazole biosynthesis enzyme
      0.015   12.0   5.9       0.14    8.8   2.1    2.5  3  TIGR00275 TIGR00275: flavoprotein, HI0933 family
      0.021   11.7   1.6       0.04   10.7   1.1    1.4  1  TIGR03378 glycerol3P_GlpB: glycerol-3-phosphate dehydrogenase, anaerobic, B subunit
      0.032   11.2   1.0      0.049   10.6   0.7    1.2  1  TIGR01421 gluta_reduc_1: glutathione-disulfide reductase
      0.039   10.3   0.2       0.06    9.7   0.1    1.2  1  TIGR03143 AhpF_homolog: putative alkyl hydroperoxide reductase F subunit
      0.076    9.8   3.8      0.038   10.8   0.3    1.9  2  TIGR02053 MerA: mercuric reductase
       0.12    9.2   2.9       0.14    9.1   0.6    1.9  2  TIGR01790 carotene-cycl: lycopene cyclase family protein


Domain annotation for each model (and alignments):
>> TIGR00136  gidA: tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  678.6   0.0  9.4e-207  1.6e-204       2     613 ..      54     702 ..      53     705 .. 0.92

  Alignments for each domain:
  == domain 1    score: 678.6 bits;  conditional E-value: 9.4e-207
   TIGR00136   2 dviviGaGhaGieaalaaarlgaktllltlnldtigklsCnPaiGGlakgilvkeiDalgGlmgkaaDkaalqfrvLnsskGPavralraqiDkvlYkkavkealenqpnlsllqeevedliled................ndevkGvvtkdgaklrakavilttGtfLkgkiyiGekskeaGrag......ekasvklsetLrelgfkvgrlktGtppriakesidfsklevqkgdeqllafsfktkelsk....kqlsCylthtnekthelirenlhrsply.sgsiegkGPrYCPsiedkvvrfadkerhqiflePeglnseevYlnGlstslpedvqekivrslkGlenaeilrpgYaieYDyldptqlkptLetkkikgLflaGqinGttGYeeaaaqGllaGinaalklqekeelilkrseaYiGvlidDLvtkgvkePYrlltsraeyrlllreDnaderLteigrelGlidekryarfkkkkekieeekerLkstklkkskevkeelkklaqsplkeevslvdllkrkelklekltkllpekae.............ldkevleqveievkYegYikkqeeeikklkklekvklPkkldykkveglsseareklekvrPlslaqasrisGitpadisvllvylk 613
                 dviv+G+GhaG+eaa+aaar ga+tll+t+++dtig++sCnP+iGG++kg+lv+e+Dal+Glmg+++D+a++ fr+Ln+ kGPav+++raq+D+  Y++a++ al++ + l+l+++ vedl+le                   +v Gv t++ga l+a +v++ttGtf++g ++iG+++  aGr        e + + l+ tL  l + + rlktGtppr++ ++id  +le q ++e +l+fs+ ++  +     + ++Cy t+tne+th+++r+n+h  p y sg  +g GPrYCPs+  kv rf ++e h ++lePegl+++ vY+nG+s+++p +vq+++v+s+ Glenaei++p+Y +eYDy+dp+ l++tLe ++ +gL+laGqi GttGYeeaa+ G +aG naal+++e+++li+ r+e Y+GvlidDLvt+g++ePYr++tsrae+rlllr+Dnad rLt++g++ G ++++r +r++ k+++i   +++L s++l +s+ +++       +p  e +s++++l+ +  +l++++++++++++             +     e ve+e+kY+ Y+++qe+e+++l+ + +v +P k++y +++ ls+e +ekl+  rP++l +as i Gitp +++ +++ ++
  MMETSP1137-20121227|4949_1  54 DVIVVGGGHAGCEAAAAAARAGAQTLLVTQSIDTIGEMSCNPSIGGIGKGHLVREVDALDGLMGRVIDEAGIHFRMLNRRKGPAVQGPRAQADRDIYRTAMQAALRQVDRLELYEGSVEDLLLEGlpassnvaashaaatrTPRVVGVRTAEGAVLHAPRVVITTGTFMRGVVHIGKSTRPAGRYMrdsdsvEPPCTALAATLLRLKLPLSRLKTGTPPRLDGRTIDNGALEPQPSEEPPLPFSYVNEGGTVanahRLITCYKTYTNERTHDIVRANMHTLPDYeSGGGKGAGPRYCPSLFSKVERFPQREGHMVWLEPEGLSTHWVYPNGISSAFPLEVQQQLVNSMIGLENAEIVKPAYDVEYDYVDPRCLRHTLEVRECTGLYLAGQIIGTTGYEEAASLGTIAGANAALACAERPPLIIGRHEGYVGVLIDDLVTRGTQEPYRMFTSRAEWRLLLRADNADRRLTPKGAAAGCVSDERRQRLRDKESAIALGRHALASFTLPNSEWAAR---GFGVKPNGEMRSAEQILNVPRATLHEIEDTIASNPHgwrrgveppvgpaVPVLGREAVEVEIKYSNYLERQEKEVARLQDHMSVVIPFKVEYGALPCLSKEEVEKLTLARPATLREASLIPGITPKALFYIYKEIS 702
                 8**************************************************************************************************************************988888999999888877679***************************************964211222456778***********************************************99854433355889***********************9945889************************************************************************************************************************************************************************************************************************99985544...455556667888888888888888888888877765444443333222233445699***********************************************************************99987665 PP

>> TIGR00137  gid_trmFO: tRNA:m(5)U-54 methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.5   0.2    0.0019      0.33       3      29 ..      55      81 ..      53     106 .. 0.92
   2 !   36.9   0.0   2.3e-12     4e-10     287     388 ..     394     495 ..     383     506 .. 0.85

  Alignments for each domain:
  == domain 1    score: 7.5 bits;  conditional E-value: 0.0019
   TIGR00137  3 vnviGgGlaGseaawqlakeGvrvily 29
                v+v+GgG aG+eaa   a++G +  l+
  MMETSP1137-20121227|4949_1 55 VIVVGGGHAGCEAAAAAARAGAQTLLV 81
                89*******************998875 PP

  == domain 2    score: 36.9 bits;  conditional E-value: 2.3e-12
   TIGR00137 287 qkrvlrlipglenaefvrlGvmhrntfinspklltaslqlkdredlffaGqltGveGyvasaasGllaGinaarlalGekllkl.paetmlGalvnyistkse 388
                 q+++++ + glenae+v+        +++ p+ l+++l++++   l++aGq++G+ Gy ++a+ G +aG naa  +   ++l++  +e  +G l++ ++t+  
  MMETSP1137-20121227|4949_1 394 QQQLVNSMIGLENAEIVKPAYDVEYDYVD-PRCLRHTLEVRECTGLYLAGQIIGTTGYEEAASLGTIAGANAALACAERPPLIIgRHEGYVGVLIDDLVTRGT 495
                 677777888*********99888888886.899***************************************9877777777661568899999998888755 PP

>> TIGR02032  GG-red-SF: geranylgeranyl reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.5   0.6     3e-09   5.1e-07       2      48 ..      54     101 ..      53     211 .. 0.70

  Alignments for each domain:
  == domain 1    score: 27.5 bits;  conditional E-value: 3e-09
   TIGR02032   2 DvvvvGaGpaGssaAlrlakkGlrVlllekk.elprekeCggalskra 48 
                 Dv+vvG+G aG+ aA+ +a++G+++ll+ ++ + ++e+ C   + +  
  MMETSP1137-20121227|4949_1  54 DVIVVGGGHAGCEAAAAAARAGAQTLLVTQSiDTIGEMSCNPSIGGIG 101
                 ***************************987646788888864444333 PP

>> TIGR01372  soxA: sarcosine oxidase, alpha subunit family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   0.6   1.1e-07   1.8e-05     163     207 ..      47      91 ..      33     113 .. 0.85

  Alignments for each domain:
  == domain 1    score: 20.5 bits;  conditional E-value: 1.1e-07
   TIGR01372 163 dkvnahcDvLvvGaGpaGLaaAraAaraGarvilvdeqaeaGGsl 207
                 +++    Dv+vvG+G aG  aA aAaraGa+ +lv ++  + G +
  MMETSP1137-20121227|4949_1  47 ESRSRTVDVIVVGGGHAGCEAAAAAARAGAQTLLVTQSIDTIGEM 91 
                 6677789****************************9988777665 PP

>> TIGR03140  AhpF: alkyl hydroperoxide reductase, F subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.2   6.6e-07   0.00011     207     245 ..      47      85 ..      37      92 .. 0.89
   2 ?   -0.9   0.0      0.55        94     299     325 ..     198     224 ..     185     232 .. 0.82

  Alignments for each domain:
  == domain 1    score: 18.7 bits;  conditional E-value: 6.6e-07
   TIGR03140 207 eeekekydvlvvGgGPagaaaaiyaarkGlkvalvaeri 245
                 e++ ++ dv+vvGgG ag  aa  aar G ++ lv++ i
  MMETSP1137-20121227|4949_1  47 ESRSRTVDVIVVGGGHAGCEAAAAAARAGAQTLLVTQSI 85 
                 5567789****************************9877 PP

  == domain 2    score: -0.9 bits;  conditional E-value: 0.55
   TIGR03140 299 akevelesGevlkaksvivatGakWre 325
                 +  v+ ++G+vl+a  v+++tG   r 
  MMETSP1137-20121227|4949_1 198 VVGVRTAEGAVLHAPRVVITTGTFMRG 224
                 56688999**************98776 PP

>> TIGR03997  mycofact_OYE_2: mycofactocin system FadH/OYE family oxidoreductase 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   2.3     6e-07    0.0001     359     426 ..      29      99 ..       4     124 .. 0.76

  Alignments for each domain:
  == domain 1    score: 18.6 bits;  conditional E-value: 6e-07
   TIGR03997 359 vnPraGre..lkeavtlkkarrr.kkvlvvGgGPaGleaaataarrGhrvtllereeelGGqvklaaklpg 426
                 v P +G    ++ + +++++r r   v+vvGgG aG eaaa aar G + +l+ +   + G++    ++ g
  MMETSP1137-20121227|4949_1  29 VRPLTGYSrvVEPCCAVQESRSRtVDVIVVGGGHAGCEAAAAAARAGAQTLLVTQSIDTIGEMSCNPSIGG 99 
                 457777555355677888888776899***************************99999999987777655 PP

>> TIGR01350  lipoamide_DH: dihydrolipoyl dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.4   7.4e-07   0.00013       2      83 ..      53     133 ..      52     142 .. 0.71
   2 ?   -3.7   0.0       4.5   7.6e+02     111     142 ..     191     221 ..     182     227 .. 0.77

  Alignments for each domain:
  == domain 1    score: 18.7 bits;  conditional E-value: 7.4e-07
   TIGR01350   2 ydvvviGgGpgGYvaAiraaqlglkvalvek..eklGGtClnvGCiPtKalLksaevveelke.akelgievenvkldlekller 83 
                 +dv+v+GgG +G  aA  aa++g +++lv +  +++G    ++ C P+   + ++++v+e+      +g  +++  + ++ l  r
  MMETSP1137-20121227|4949_1  53 VDVIVVGGGHAGCEAAAAAARAGAQTLLVTQsiDTIG----EMSCNPSIGGIGKGHLVREVDAlDGLMGRVIDEAGIHFRMLNRR 133
                 7****************************98544555....45666777666777766666663334555555566655555555 PP

  == domain 2    score: -3.7 bits;  conditional E-value: 4.5
   TIGR01350 111 aklldkkevevkkekkekkleakniiiAtGse 142
                 a  + ++ v v++ +++ +l+a +++i tG+ 
  MMETSP1137-20121227|4949_1 191 AATRTPRVVGVRTAEGA-VLHAPRVVITTGTF 221
                 45566788889998865.99999999999985 PP

>> TIGR03169  Nterm_to_SelD: pyridine nucleotide-disulfide oxidoreductase family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.0   1.5e-06   0.00025     116     171 ..      23      78 ..      11      95 .. 0.85

  Alignments for each domain:
  == domain 1    score: 18.2 bits;  conditional E-value: 1.5e-06
   TIGR03169 116 adkavpvKPleellaaweellekakaseetkslavvGgGaagvElalalrkrlkkr 171
                 +++  +v+Pl+ + + +e   + ++++++t +++vvGgG ag E a a +++ +++
  MMETSP1137-20121227|4949_1  23 HHALGGVRPLTGYSRVVEPCCAVQESRSRTVDVIVVGGGHAGCEAAAAAARAGAQT 78 
                 4556689*****************9999999****************999887765 PP

>> TIGR02028  ChlP: geranylgeranyl reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.5   3.9e-06   0.00067       3      36 ..      55      88 ..      53     125 .. 0.81

  Alignments for each domain:
  == domain 1    score: 16.3 bits;  conditional E-value: 3.9e-06
   TIGR02028  3 vavvgggpagasaaetlakagiqtfllerkldna 36
                v vvggg ag+ aa + a+ag+qt+l+ + +d+ 
  MMETSP1137-20121227|4949_1 55 VIVVGGGHAGCEAAAAAARAGAQTLLVTQSIDTI 88
                89*************************9998863 PP

>> TIGR02023  BchP-ChlP: geranylgeranyl reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.4   7.5e-06    0.0013       2      36 ..      54      88 ..      53     127 .. 0.73

  Alignments for each domain:
  == domain 1    score: 15.6 bits;  conditional E-value: 7.5e-06
   TIGR02023  2 dvlviGggpsGaaaaetLakagievillerelari 36
                dv+v+Ggg +G  aa   a+ag +++l+ + ++ i
  MMETSP1137-20121227|4949_1 54 DVIVVGGGHAGCEAAAAAARAGAQTLLVTQSIDTI 88
                8****************************998765 PP

>> TIGR01812  sdhA_frdA_Gneg: succinate dehydrogenase or fumarate reductase, flavoprotein subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.4   9.4e-06    0.0016       1      30 [.      54      83 ..      54      96 .. 0.93

  Alignments for each domain:
  == domain 1    score: 14.8 bits;  conditional E-value: 9.4e-06
   TIGR01812  1 DvvivGaGlAGlraAveaakkglkvavisk 30
                Dv++vG+G AG+ aA +aa++g+++ ++++
  MMETSP1137-20121227|4949_1 54 DVIVVGGGHAGCEAAAAAARAGAQTLLVTQ 83
                9************************99986 PP

>> TIGR01292  TRX_reduct: thioredoxin-disulfide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.4   1.7e-05    0.0029       2      33 ..      54      85 ..      53      98 .. 0.84

  Alignments for each domain:
  == domain 1    score: 14.3 bits;  conditional E-value: 1.7e-05
   TIGR01292  2 dviiiGaGpaGltaaiYaaranlktlliegke 33
                dvi++G+G aG+ aa  aara+ +tll++++ 
  MMETSP1137-20121227|4949_1 54 DVIVVGGGHAGCEAAAAAARAGAQTLLVTQSI 85
                9************************9998654 PP

>> TIGR01813  flavo_cyto_c: flavocytochrome c
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   0.8   3.5e-05     0.006       1      36 [.      54      89 ..      54      99 .. 0.88

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 3.5e-05
   TIGR01813  1 dvvvvGsGlAGlsaaleakkaglaevvvleKapviG 36
                dv+vvG G AG  aa +a +ag++  +v +  ++iG
  MMETSP1137-20121227|4949_1 54 DVIVVGGGHAGCEAAAAAARAGAQTLLVTQSIDTIG 89
                8*********************99999888888887 PP

>> TIGR03467  HpnE: squalene-associated FAD-dependent desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   2.6     6e-05      0.01       1      28 [.      55      82 ..      55      92 .. 0.91

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 6e-05
   TIGR03467  1 vvvvGgGlAGLaAAveLaraGvrvtllE 28
                v+vvGgG AG+ AA++ araG+++ l+ 
  MMETSP1137-20121227|4949_1 55 VIVVGGGHAGCEAAAAAARAGAQTLLVT 82
                89*********************99875 PP

>> TIGR01377  soxA_mon: sarcosine oxidase, monomeric form
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.1   0.2   7.5e-05     0.013       2      31 ..      54      83 ..      53      89 .. 0.94

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 7.5e-05
   TIGR01377  2 DvivvGaGvmGsaaayqLakrgkkvLLleq 31
                DvivvG G  G+ aa   a+ g ++LL+ q
  MMETSP1137-20121227|4949_1 54 DVIVVGGGHAGCEAAAAAARAGAQTLLVTQ 83
                9**************************987 PP

>> TIGR03197  MnmC_Cterm: tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.4   0.00011     0.019       1      42 [.      54      95 ..      54     136 .. 0.84

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 0.00011
   TIGR03197  1 kvavIGaGiAgaalalsLarrGvqvtllekdeklaqgASgnr 42
                +v+v+G+G Ag+ +a + ar+G+q  l+ ++ +   + S n+
  MMETSP1137-20121227|4949_1 54 DVIVVGGGHAGCEAAAAAARAGAQTLLVTQSIDTIGEMSCNP 95
                69*************************999988777777776 PP

>> TIGR01816  sdhA_forward: succinate dehydrogenase, flavoprotein subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.7   0.00012     0.021       3      35 ..      53      85 ..      51     102 .. 0.87

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 0.00012
   TIGR01816  3 fdvvvvGaGGaGlraalelakeglktavvtklf 35
                 dv+vvG+G aG  aa  +a++g +t  vt+  
  MMETSP1137-20121227|4949_1 53 VDVIVVGGGHAGCEAAAAAARAGAQTLLVTQSI 85
                79************************9999865 PP

>> TIGR00292  TIGR00292: thiazole biosynthesis enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.1   0.00012     0.021      22      60 ..      53      91 ..      45     175 .. 0.86

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 0.00012
   TIGR00292 22 sDviivGaGpsGLtaayylakeglkvvvlerklaiGGGs 60
                 Dvi+vG+G +G  aa   a++g +++++ +++   G +
  MMETSP1137-20121227|4949_1 53 VDVIVVGGGHAGCEAAAAAARAGAQTLLVTQSIDTIGEM 91
                7*************************9999988766554 PP

>> TIGR00275  TIGR00275: flavoprotein, HI0933 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   2.1    0.0008      0.14       1      29 [.      55      83 ..      55      90 .. 0.90
   2 ?   -2.8   0.0       2.6   4.5e+02     134     159 ..     194     220 ..     185     223 .. 0.84
   3 ?    3.1   0.0     0.044       7.5     361     382 ..     428     449 ..     416     451 .. 0.89

  Alignments for each domain:
  == domain 1    score: 8.8 bits;  conditional E-value: 0.0008
   TIGR00275  1 viiiGgGaaGlmaAitaaeegakVlllEk 29
                vi++GgG aG  aA++aa++ga+ ll+ +
  MMETSP1137-20121227|4949_1 55 VIVVGGGHAGCEAAAAAARAGAQTLLVTQ 83
                79*******************99998755 PP

  == domain 2    score: -2.8 bits;  conditional E-value: 2.6
   TIGR00275 134 keeekfevet.ekkeleakkvilatGg 159
                 ++ + ++v+t e+  l+a +v+++tG 
  MMETSP1137-20121227|4949_1 194 RTPRVVGVRTaEGAVLHAPRVVITTGT 220
                 566778999999999**********96 PP

  == domain 3    score: 3.1 bits;  conditional E-value: 0.044
   TIGR00275 361 ktmesklvkglYfaGEvlDvdg 382
                 +t+e + ++glY+aG ++  +g
  MMETSP1137-20121227|4949_1 428 HTLEVRECTGLYLAGQIIGTTG 449
                 79***************98887 PP

>> TIGR03378  glycerol3P_GlpB: glycerol-3-phosphate dehydrogenase, anaerobic, B subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   1.1   0.00024      0.04       2      31 ..      54      83 ..      53      93 .. 0.93

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 0.00024
   TIGR03378  2 DviiiGgGlaGlscalrlaeaGkktaiiaa 31
                Dvi++GgG aG  +a ++a+aG +t+++++
  MMETSP1137-20121227|4949_1 54 DVIVVGGGHAGCEAAAAAARAGAQTLLVTQ 83
                9**************************997 PP

>> TIGR01421  gluta_reduc_1: glutathione-disulfide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.7   0.00029     0.049       2      33 ..      52      83 ..      51     111 .. 0.86

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 0.00029
   TIGR01421  2 eydylviGGGsGGiasarraaeyGakallvee 33
                + d++v+GGG  G  +a  aa+ Ga++llv +
  MMETSP1137-20121227|4949_1 52 TVDVIVVGGGHAGCEAAAAAARAGAQTLLVTQ 83
                679**************************976 PP

>> TIGR03143  AhpF_homolog: putative alkyl hydroperoxide reductase F subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.1   0.00035      0.06       4      35 ..      52      83 ..      49     108 .. 0.86

  Alignments for each domain:
  == domain 1    score: 9.7 bits;  conditional E-value: 0.00035
   TIGR03143  4 lydlvviGgGpaglsaGiyagraklkvliiek 35
                  d++v+GgG ag  a   a+ra  ++l++ +
  MMETSP1137-20121227|4949_1 52 TVDVIVVGGGHAGCEAAAAAARAGAQTLLVTQ 83
                579************************99876 PP

>> TIGR02053  MerA: mercuric reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.3   0.00023     0.038       2     199 ..      54      84 ..      45     115 .. 0.65
   2 ?   -0.7   0.1      0.69   1.2e+02     299     330 ..     436     466 ..     429     471 .. 0.82

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 0.00023
   TIGR02053   2 dlviiGsGaaafaaaikaaelgakvvlverGilGGtCvnvGCvPSKallraaevaklakkasvgllaaevevdleelleqkkevveelRkeKYedvlesydavdllegkakfkdektvkvdlgkevvgakrvliAtGarpavPeipGLkeaeyltseelleldkipeslvviGggaiavElaqlfarlGsevtllqrs 199
                 d++++G+G a+  aa +aa+ ga+ +lv                                                                                                                                                                        +s
  MMETSP1137-20121227|4949_1  54 DVIVVGGGHAGCEAAAAAARAGAQTLLVT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------QS 84 
                 45555555555555555555555555554.......................................................................................................................................................................44 PP

  == domain 2    score: -0.7 bits;  conditional E-value: 0.69
   TIGR02053 299 pkiyAAGDvikglqlesvAakeGvvaAenalg 330
                 +++y AG +i+   +e++A   G++a  na  
  MMETSP1137-20121227|4949_1 436 TGLYLAGQIIGTTGYEEAA-SLGTIAGANAAL 466
                 689************9865.579999999864 PP

>> TIGR01790  carotene-cycl: lycopene cyclase family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   0.6   0.00082      0.14       1      31 [.      54      84 ..      54      92 .. 0.83
   2 ?   -1.0   0.0      0.95   1.6e+02      72     138 ..     151     220 ..     144     232 .. 0.60

  Alignments for each domain:
  == domain 1    score: 9.1 bits;  conditional E-value: 0.00082
   TIGR01790  1 DliviGgGlAglaiAlelakpglrvqlieaa 31
                D+iv+GgG Ag+  A++ a++g +  l+  +
  MMETSP1137-20121227|4949_1 54 DVIVVGGGHAGCEAAAAAARAGAQTLLVTQS 84
                9******************999887777655 PP

  == domain 2    score: -1.0 bits;  conditional E-value: 0.95
   TIGR01790  72 arklkraYgsvdraqlkee.llqkleea.vlwleakaikve.adavslslvecaggqriqarlVidargf 138
                 ++ ++ a ++vdr +l e  ++  l e+     + +a +++  ++ +   v +a+g +++a+ V+ ++g 
  MMETSP1137-20121227|4949_1 151 RTAMQAALRQVDRLELYEGsVEDLLLEGlPASSNVAASHAAaTRTPRVVGVRTAEGAVLHAPRVVITTGT 220
                 556666666777777666413344444422222222222220233444557899*******999999985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (745 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       175  (0.0426621); expected 82.0 (0.02)
Passed bias filter:                      151  (0.0368113); expected 82.0 (0.02)
Passed Vit filter:                        70  (0.0170648); expected 4.1 (0.001)
Passed Fwd filter:                        24  (0.0058508); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              24  [number of targets reported over threshold]
# CPU time: 0.76u 0.18s 00:00:00.94 Elapsed: 00:00:00.73
# Mc/sec: 1347.01
//
Query:       MMETSP1137-20121227|4950_1  [L=98]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (98 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        61  (0.0148708); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.14s 00:00:00.27 Elapsed: 00:00:00.27
# Mc/sec: 479.07
//
Query:       MMETSP1137-20121227|4951_1  [L=390]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (390 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       154  (0.0375427); expected 82.0 (0.02)
Passed bias filter:                      120  (0.029254); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.16s 00:00:00.47 Elapsed: 00:00:00.51
# Mc/sec: 1009.33
//
Query:       MMETSP1137-20121227|4952_1  [L=185]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (185 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        91  (0.0221843); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.10s 00:00:00.28 Elapsed: 00:00:00.49
# Mc/sec: 498.33
//
Query:       MMETSP1137-20121227|4953_1  [L=474]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (474 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       145  (0.0353486); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.13s 00:00:00.45 Elapsed: 00:00:00.56
# Mc/sec: 1117.19
//
Query:       MMETSP1137-20121227|4954_1  [L=539]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-11   42.2   1.9    6.9e-08   30.1   0.0    3.3  3  TIGR01019 sucCoAalpha: succinate-CoA ligase, alpha subunit
    0.00097   15.8   0.1     0.0028   14.3   0.1    1.7  2  TIGR01800 cit_synth_II: 2-methylcitrate synthase/citrate synthase II
  ------ inclusion threshold ------
      0.025   11.1   0.5       0.38    7.2   0.0    2.3  2  TIGR02717 AcCoA-syn-alpha: acetyl coenzyme A synthetase (ADP forming), alpha domain


Domain annotation for each model (and alignments):
>> TIGR01019  sucCoAalpha: succinate-CoA ligase, alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   0.0         1   1.4e+03      30      78 ..      89     137 ..      85     139 .. 0.74
   2 !   30.1   0.0     5e-11   6.9e-08     136     200 ..     271     335 ..     165     347 .. 0.78
   3 !    9.3   0.1   0.00011      0.15     242     284 ..     349     391 ..     340     393 .. 0.91

  Alignments for each domain:
  == domain 1    score: -3.8 bits;  conditional E-value: 1
   TIGR01019  30 GtkivgGvtpgkgGtevlglpvfdsvkeaveetganasvifvPapfakd 78 
                 G ++  G+++ k+    l +pv+    e+  ++ +  ++ ++ ++f  +
  MMETSP1137-20121227|4954_1  89 GPNFQEGLNAMKTAGASLAIPVHVYGPETHITAIVPMALAYIDPAFKYE 137
                 6677788888888888888888877777777777777777877777655 PP

  == domain 2    score: 30.1 bits;  conditional E-value: 5e-11
   TIGR01019 136 mPaeilkkGkvGivsrsGtltyeavaqlteaglGqstcvGiGGdpvnGtsfidvleafeeddete 200
                 +  +++++G+v  vsrsG ++ e+   ++++  G+   v iGGd+  Gt+f d l ++e +++ +
  MMETSP1137-20121227|4954_1 271 IDCKLHRPGSVAYVSRSGGMSNELNNIVSQHTNGVYEGVAIGGDRYPGTTFWDHLMRYEANPDVK 335
                 45689*******************************************************99876 PP

  == domain 3    score: 9.3 bits;  conditional E-value: 0.00011
   TIGR01019 242 rmGhaGaiisggkGtaeskiealeaaGvkvvkslaeiaelvae 284
                   GhaG+  +    t+e+k  al++aG+ v  s  e+ ++++e
  MMETSP1137-20121227|4954_1 349 SFGHAGSAANSMLETSEAKNAALKEAGAIVPTSFNELPHAIHE 391
                 57*****************************999999888765 PP

>> TIGR01800  cit_synth_II: 2-methylcitrate synthase/citrate synthase II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0      0.16   2.2e+02      13      52 ..     433     475 ..     426     483 .. 0.73
   2 !   14.3   0.1   2.1e-06    0.0028     226     272 ..     484     532 ..     478     535 .. 0.82

  Alignments for each domain:
  == domain 1    score: -1.8 bits;  conditional E-value: 0.16
   TIGR01800  13 lsti.dkeegkLtyrGydiedlaekas.fEEvaylllyg.kLP 52 
                 +sti d+ +++L y G++i  + e+      v+ ll++  kLP
  MMETSP1137-20121227|4954_1 433 VSTIcDDRKEELIYAGMEIGRVFEENIgIGGVVSLLWFRrKLP 475
                 55551455679********988776554888888888742565 PP

  == domain 2    score: 14.3 bits;  conditional E-value: 2.1e-06
   TIGR01800 226 leeiedpeeaeeyikkklenkekimGfGHrvYk..taDpRakilkelak 272
                 ++ +++  + +++i k+ ++k+ +mG+GHr+    + D R++ilk++ k
  MMETSP1137-20121227|4954_1 484 MKAVDQGLSPQAFIDKMRDEKKLVMGIGHRIKSleNPDKRVEILKKFVK 532
                 4556666778899999999************87447899******9876 PP

>> TIGR02717  AcCoA-syn-alpha: acetyl coenzyme A synthetase (ADP forming), alpha domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   0.0   0.00028      0.38     148     186 ..     276     314 ..     264     350 .. 0.84
   2 ?    1.7   0.1     0.012        17     251     282 ..     352     387 ..     345     402 .. 0.75

  Alignments for each domain:
  == domain 1    score: 7.2 bits;  conditional E-value: 0.00028
   TIGR02717 148 pkkGeialisQSGalllalldwaekekvGlsklvslGnk 186
                  ++G++a +s SG++ + l +++ ++  G+ + v++G  
  MMETSP1137-20121227|4954_1 276 HRPGSVAYVSRSGGMSNELNNIVSQHTNGVYEGVAIGGD 314
                 589*******************************99965 PP

  == domain 2    score: 1.7 bits;  conditional E-value: 0.012
   TIGR02717 251 HTGalagsd....evyeaalkqaGviraksieelfd 282
                 H G+ a s     e+ +aalk+aG i+ +s++el +
  MMETSP1137-20121227|4954_1 352 HAGSAANSMletsEAKNAALKEAGAIVPTSFNELPH 387
                 56655554322228999****************965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (539 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       127  (0.0309605); expected 82.0 (0.02)
Passed bias filter:                      118  (0.0287665); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.44u 0.12s 00:00:00.56 Elapsed: 00:00:00.65
# Mc/sec: 1094.49
//
Query:       MMETSP1137-20121227|4955_1  [L=269]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (269 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        70  (0.0170648); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.16s 00:00:00.39 Elapsed: 00:00:00.32
# Mc/sec: 1109.53
//
Query:       MMETSP1137-20121227|4956_1  [L=237]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.8e-44  146.8   0.0    9.4e-44  146.3   0.0    1.1  1  TIGR00068 glyox_I: lactoylglutathione lyase
     0.0011   17.4   0.0       0.99    7.8   0.0    2.3  2  TIGR03081 metmalonyl_epim: methylmalonyl-CoA epimerase
     0.0012   16.1   0.1      0.033   11.4   0.0    2.4  3  TIGR03213 23dbph12diox: 2,3-dihydroxybiphenyl 1,2-dioxygenase
      0.003   14.6   0.0      0.046   10.7   0.0    2.0  2  TIGR02295 HpaD: 3,4-dihydroxyphenylacetate 2,3-dioxygenase
      0.004   15.0   0.0        0.4    8.5   0.0    2.3  2  TIGR03645 glyox_marine: lactoylglutathione lyase family protein
     0.0068   13.5   0.0      0.086    9.9   0.0    2.1  2  TIGR03211 catechol_2_3: catechol 2,3 dioxygenase


Domain annotation for each model (and alignments):
>> TIGR00068  glyox_I: lactoylglutathione lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  146.3   0.0   1.4e-46   9.4e-44       7     144 ..      45     214 ..      30     219 .. 0.95

  Alignments for each domain:
  == domain 1    score: 146.3 bits;  conditional E-value: 1.4e-46
   TIGR00068   7 avedeatkkylllhtmlrvgdldksldfytevlGmkllrkkdfpeekfslaflgyedessa...............avieLtynwgtek.....ydlGn..............gfGhiaiavddvykacervkakGgkvvrepgpvkggtkviafvkDPDGykiellekkkt 144
                   +d+at ky+++++m+rv+d++ksldfy++vlG +l+  ++fp+ kf ++f++    ++                  ieLt+n+g e+     y++Gn              gfGh++i+v+dvy+acer++++G ++++ p    gg+k++afvkDPDGy +e+l ++++
  MMETSP1137-20121227|4956_1  45 KSRDSATSKYIMQQVMIRVKDPKKSLDFYCDVLGFNLIMYREFPQWKFNVYFVASCXPATIpgtpeeqwafcmrtpGCIELTWNYGSETeegavYNTGNsdatgsqdgqkvrgGFGHLGITVPDVYEACERFQSLGCEFAKTP--NAGGMKGLAFVKDPDGYLVEVLPQGEM 214
                 578999************************************************99988889999**********99*********99999**************************************************99..9********************988766 PP

>> TIGR03081  metmalonyl_epim: methylmalonyl-CoA epimerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.8   0.0    0.0014      0.99       3      44 ..      57      98 ..      55     103 .. 0.91
   2 !    7.3   0.0    0.0021       1.5       3      31 ..     160     187 ..     150     210 .. 0.56

  Alignments for each domain:
  == domain 1    score: 7.8 bits;  conditional E-value: 0.0014
   TIGR03081  3 dhvaiavkdleeaaklyrdvlGakvseeeelpeqgvkvvfle 44
                + v i vkd ++   +y dvlG+++   +e+p+ + +v f++
  MMETSP1137-20121227|4956_1 57 QQVMIRVKDPKKSLDFYCDVLGFNLIMYREFPQWKFNVYFVA 98
                578899***************************999999886 PP

  == domain 2    score: 7.3 bits;  conditional E-value: 0.0021
   TIGR03081   3 dhvaiavkdleeaaklyrdvlGakvseee 31 
                  h++i v+d+ ea + ++  lG++++++ 
  MMETSP1137-20121227|4956_1 160 GHLGITVPDVYEACERFQ-SLGCEFAKTP 187
                 355666666666666665.5555554433 PP

>> TIGR03213  23dbph12diox: 2,3-dihydroxybiphenyl 1,2-dioxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.4   0.0   4.9e-05     0.033     142     169 ..      55      82 ..      39      99 .. 0.81
   2 ?    2.0   0.0     0.037        25     140     167 ..     156     182 ..     114     196 .. 0.64
   3 ?   -1.7   0.0       0.5   3.4e+02      98     117 ..     191     210 ..     176     228 .. 0.71

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 4.9e-05
   TIGR03213 142 GlGhvvlavedvdaaleFYtevLGlqls 169
                  +  v+++v+d +++l+FY +vLG++l 
  MMETSP1137-20121227|4956_1  55 IMQQVMIRVKDPKKSLDFYCDVLGFNLI 82 
                 5667899******************874 PP

  == domain 2    score: 2.0 bits;  conditional E-value: 0.037
   TIGR03213 140 dqGlGhvvlavedvdaaleFYtevLGlq 167
                   G+Gh+ ++v+dv +a+e + + LG +
  MMETSP1137-20121227|4956_1 156 RGGFGHLGITVPDVYEACERF-QSLGCE 182
                 349999999999999999887.677765 PP

  == domain 3    score: -1.7 bits;  conditional E-value: 0.5
   TIGR03213  98 gvlglikftDPaGnrleiyy 117
                 g++gl+ ++DP G  +e+  
  MMETSP1137-20121227|4956_1 191 GMKGLAFVKDPDGYLVEVLP 210
                 56788889999999999864 PP

>> TIGR02295  HpaD: 3,4-dihydroxyphenylacetate 2,3-dioxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.7   0.0   6.8e-05     0.046       7      29 ..      58      80 ..      54      86 .. 0.90
   2 ?    1.6   0.0      0.04        27      73     118 ..     168     211 ..     155     220 .. 0.72

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 6.8e-05
   TIGR02295  7 hvelvvtDLeksrefYseilGlr 29
                +v+++v+D +ks++fY ++lG++
  MMETSP1137-20121227|4956_1 58 QVMIRVKDPKKSLDFYCDVLGFN 80
                799******************97 PP

  == domain 2    score: 1.6 bits;  conditional E-value: 0.04
   TIGR02295  73 dldkladllkelGlkvklveekvekgigealrvedpeGiplelyfe 118
                 d+ ++ + +++lG++  ++ + +         v+dp G+ +e+  +
  MMETSP1137-20121227|4956_1 168 DVYEACERFQSLGCEFAKTPNAGGM--KGLAFVKDPDGYLVEVLPQ 211
                 6778888999999988776655433..3334589999998887655 PP

>> TIGR03645  glyox_marine: lactoylglutathione lyase family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.5   0.0   0.00058       0.4       7      33 ..      58      84 ..      54      88 .. 0.89
   2 ?    4.0   0.0     0.014       9.8       4      23 ..     158     177 ..     155     188 .. 0.83

  Alignments for each domain:
  == domain 1    score: 8.5 bits;  conditional E-value: 0.00058
   TIGR03645  7 higlsvpdlekavkfytevlgwylime 33
                ++ + v d +k+++fy +vlg+ lim 
  MMETSP1137-20121227|4956_1 58 QVMIRVKDPKKSLDFYCDVLGFNLIMY 84
                5678999******************95 PP

  == domain 2    score: 4.0 bits;  conditional E-value: 0.014
   TIGR03645   4 tfshiglsvpdlekavkfyt 23 
                  f h+g++vpd+ +a + ++
  MMETSP1137-20121227|4956_1 158 GFGHLGITVPDVYEACERFQ 177
                 599*********99987654 PP

>> TIGR03211  catechol_2_3: catechol 2,3 dioxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.9   0.0   0.00013     0.086       6      31 ..      57      82 ..      54      98 .. 0.84
   2 ?    1.3   0.0     0.054        37     249     270 ..     195     216 ..     157     222 .. 0.68

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 0.00013
   TIGR03211  6 ghvelrvldleealkfykdvlGleet 31
                 +v +rv d+ ++l+fy dvlG++  
  MMETSP1137-20121227|4956_1 57 QQVMIRVKDPKKSLDFYCDVLGFNLI 82
                5799******************9865 PP

  == domain 2    score: 1.3 bits;  conditional E-value: 0.054
   TIGR03211 249 tiYvfdPsGnrvElfaggylay 270
                   +v dP G  vE++ +g +++
  MMETSP1137-20121227|4956_1 195 LAFVKDPDGYLVEVLPQGEMIT 216
                 4578999999999998888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (237 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        75  (0.0182838); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.24u 0.17s 00:00:00.41 Elapsed: 00:00:00.41
# Mc/sec: 762.96
//
Query:       MMETSP1137-20121227|4957_1  [L=320]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   6.2e-130  432.3   0.0   6.9e-130  432.2   0.0    1.0  1  TIGR01135 glmS: glutamine-fructose-6-phosphate transaminase (isomerizing)
    2.5e-10   37.7   0.1    4.5e-10   36.9   0.0    1.3  1  TIGR00274 TIGR00274: N-acetylmuramic acid 6-phosphate etherase
    6.6e-08   30.5   0.0    1.6e-05   22.7   0.0    2.3  2  TIGR03127 RuMP_HxlB: 6-phospho 3-hexuloisomerase
    0.00019   18.2   0.0     0.0004   17.2   0.0    1.5  2  TIGR02128 G6PI_arch: bifunctional phosphoglucose/phosphomannose isomerase
    0.00035   18.1   0.0     0.0017   15.8   0.0    1.9  2  TIGR00393 kpsF: sugar isomerase, KpsF/GutQ family
     0.0009   17.2   0.0     0.0019   16.1   0.0    1.6  2  TIGR00441 gmhA: phosphoheptose isomerase


Domain annotation for each model (and alignments):
>> TIGR01135  glmS: glutamine-fructose-6-phosphate transaminase (isomerizing)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  432.2   0.0    1e-132  6.9e-130     292     607 .]       4     320 .]       1     320 [] 0.99

  Alignments for each domain:
  == domain 1    score: 432.2 bits;  conditional E-value: 1e-132
   TIGR01135 292 eritivacGtsyhaglvakylleslakipvevevaSEfryrkpvvkkktlviaisQSGETaDtlealrlakekgakvlaivNvkeSalareadavlltrAGpEigVAsTKaftaqlvvlllLalalakargalkaeeeeelvealeelpelvekvlkkeekikelaeklakkkkflflGRglaypialEgALKlKEisYihAeayaagElKHGpiALidenlpvvaiapeds.llekvksnveEvkaRgaevivlasedaeaeeeeadevikvpeveellaplvsvvplqllayhialakgtdvDkPrnLAKsVTVE 607
                  ri ivacGts+ha+l+++yl+e+la++ veve+aSEfryr+p + k+++viaisQSGETaDtl+al+la+++g   ++i+N+++S+lar ++a ++++AGpEigVAsTKaf aq+vvl+++al+lak+r++l++++ +e ++al +lp+l+++vl+++e++ ++a+ ++ +++fl+lGRg+++p+alEgALKlKEisYihAe+y+a+E+KHGpiALide +pvv+iap++   + k+ksn+eEv aRg++vi++++ed+e+ ++ ++ vi+vp++e++l+pl++v+plql+ay+ia  + ++vD+PrnLAKsVTVE
  MMETSP1137-20121227|4957_1   4 PRIIIVACGTSWHAALLGEYLIENLARMSVEVEYASEFRYRRPLLFKDDVVIAISQSGETADTLAALNLARKHGCLCIGICNTVGSTLARSTEAGVYLHAGPEIGVASTKAFSAQIVVLIMFALKLAKERHELSDDALKEKIAALATLPDLLRRVLDQKEQVLHMARVFKYASNFLYLGRGYNFPVALEGALKLKEISYIHAEGYPAAEMKHGPIALIDEFMPVVIIAPRSDpNYLKLKSNIEEVLARGGSVIAITEEDNEDLDSRCECVIRVPRTEDFLMPLLTVLPLQLMAYYIADMRKCNVDQPRNLAKSVTVE 320
                 68**********************************************************************************************************************************************************************************************************************************9876599*********************************************************************************9 PP

>> TIGR00274  TIGR00274: N-acetylmuramic acid 6-phosphate etherase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.9   0.0   6.5e-13   4.5e-10     124     203 ..      48     125 ..      36     131 .. 0.89

  Alignments for each domain:
  == domain 1    score: 36.9 bits;  conditional E-value: 6.5e-13
   TIGR00274 124 ltkndvvvgiaasGrtPyviaaleyarklGaktiaiacnpesavskqadvaievivGpeiltGssrlkagtaqklvlnll 203
                 l k+dvv++i+ sG t    aal+ ark G+  i+i+   +s ++++++  + +  Gpei   s+  ka  aq +vl ++
  MMETSP1137-20121227|4957_1  48 LFKDDVVIAISQSGETADTLAALNLARKHGCLCIGICNTVGSTLARSTEAGVYLHAGPEIGVAST--KAFSAQIVVLIMF 125
                 5689********************************************************77776..6777777777665 PP

>> TIGR03127  RuMP_HxlB: 6-phospho 3-hexuloisomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.7   0.0   2.4e-08   1.6e-05      68     126 ..      46     104 ..      27     123 .. 0.92
   2 !    5.4   0.0    0.0048       3.3      92     127 ..     245     280 ..     228     288 .. 0.88

  Alignments for each domain:
  == domain 1    score: 22.7 bits;  conditional E-value: 2.4e-08
   TIGR03127  68 paikegDlliiiSgSGetksvvkvakkakelgakviaittekestlgkladvvvelpaa 126
                 p + ++D++i+iS SGet+  +++ + a++ g   i i  + +stl++ +++ v l a 
  MMETSP1137-20121227|4957_1  46 PLLFKDDVVIAISQSGETADTLAALNLARKHGCLCIGICNTVGSTLARSTEAGVYLHAG 104
                 56779********************************************9999988875 PP

  == domain 2    score: 5.4 bits;  conditional E-value: 0.0048
   TIGR03127  92 akkakelgakviaittekestlgkladvvvelpaat 127
                 ++++ + g++viait e++  l + ++ v+++p ++
  MMETSP1137-20121227|4957_1 245 IEEVLARGGSVIAITEEDNEDLDSRCECVIRVPRTE 280
                 56667789************************9766 PP

>> TIGR02128  G6PI_arch: bifunctional phosphoglucose/phosphomannose isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.0   5.8e-07    0.0004      34     120 ..      19     105 ..       3     165 .. 0.66
   2 ?   -3.0   0.0      0.82   5.6e+02      85     100 ..     244     259 ..     240     275 .. 0.87

  Alignments for each domain:
  == domain 1    score: 17.2 bits;  conditional E-value: 5.8e-07
   TIGR02128  34 iagdlleelllekslevpvfvvkdyrlpakvdektlliavSYSGnTeETlsaveeakkkgakviai..TsgGkLeemakeegldvikiP 120
                   g++l e l  +s+ev+      yr p  ++ +  +ia+S SG T +Tl a++ a k+g   i i  T g  L++   e g+ +   P
  MMETSP1137-20121227|4957_1  19 LLGEYLIENLARMSVEVEYASEFRYRRPLLFK-DDVVIAISQSGETADTLAALNLARKHGCLCIGIcnTVGSTLARST-EAGVYLHAGP 105
                 45666655555565544444444444444444.689**********************99988766334555555444.7777666655 PP

  == domain 2    score: -3.0 bits;  conditional E-value: 0.82
   TIGR02128  85 aveeakkkgakviaiT 100
                 ++ee +++g  viaiT
  MMETSP1137-20121227|4957_1 244 NIEEVLARGGSVIAIT 259
                 6788999999999999 PP

>> TIGR00393  kpsF: sugar isomerase, KpsF/GutQ family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0   2.5e-06    0.0017      46     121 ..      49     124 ..      44     164 .. 0.85
   2 ?   -0.4   0.0      0.21   1.5e+02      35      97 ..     211     275 ..     204     281 .. 0.72

  Alignments for each domain:
  == domain 1    score: 15.8 bits;  conditional E-value: 2.5e-06
   TIGR00393  46 ekrdvvllisysGeskeldklipslkrlsvklialtgkpnsslaraadvvldikvekeacPlnlaPtsstvvtlvl 121
                  k dvv++is sGe+ +  + +   ++ +   i + +   s+lar +++ + ++   e+    +   s+ +v l++
  MMETSP1137-20121227|4957_1  49 FKDDVVIAISQSGETADTLAALNLARKHGCLCIGICNTVGSTLARSTEAGVYLHAGPEIGVASTKAFSAQIVVLIM 124
                 579***************99999999999999*************9999888877777766666666666666655 PP

  == domain 2    score: -0.4 bits;  conditional E-value: 0.21
   TIGR00393  35 tealhGdlGmvekrdvvllisysG..eskeldklipslkrlsvklialtgkpnsslaraadvvld 97 
                 +e  hG + ++++   v++i+     +  +l+  i ++   + ++ia+t++ n  l   ++ v+ 
  MMETSP1137-20121227|4957_1 211 AEMKHGPIALIDEFMPVVIIAPRSdpNYLKLKSNIEEVLARGGSVIAITEEDNEDLDSRCECVIR 275
                 5778999999987665555554440134566777777778888999***9999999888777765 PP

>> TIGR00441  gmhA: phosphoheptose isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0   2.8e-06    0.0019      71     125 ..      42      96 ..      24     125 .. 0.84
   2 ?   -3.6   0.0       3.2   2.2e+03     105     132 ..     251     278 ..     243     281 .. 0.74

  Alignments for each domain:
  == domain 1    score: 16.1 bits;  conditional E-value: 2.8e-06
   TIGR00441  71 rqvealGqkgdvllGlstsGnsknvlkaleaakdkglkvialaGkdGGklkelad 125
                 r+   l  k+dv++ +s sG++++ l al+ a+++g   i+++   G  l+  ++
  MMETSP1137-20121227|4957_1  42 RYRRPLLFKDDVVIAISQSGETADTLAALNLARKHGCLCIGICNTVGSTLARSTE 96 
                 5666677899********************************9999988876655 PP

  == domain 2    score: -3.6 bits;  conditional E-value: 3.2
   TIGR00441 105 kglkvialaGkdGGklkeladvelivpd 132
                 +g  via++ +d   l++ ++  ++vp 
  MMETSP1137-20121227|4957_1 251 RGGSVIAITEEDNEDLDSRCECVIRVPR 278
                 5556888888888888888888888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (320 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       162  (0.0394929); expected 82.0 (0.02)
Passed bias filter:                      147  (0.0358362); expected 82.0 (0.02)
Passed Vit filter:                        20  (0.00487567); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.29u 0.17s 00:00:00.46 Elapsed: 00:00:00.47
# Mc/sec: 898.65
//
Query:       MMETSP1137-20121227|4958_1  [L=706]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     1e-172  573.2   0.0   1.3e-172  572.8   0.0    1.0  1  TIGR00408 proS_fam_I: proline--tRNA ligase
    3.8e-24   83.3   0.0      2e-15   54.5   0.0    2.2  2  TIGR00409 proS_fam_II: proline--tRNA ligase
    6.5e-17   59.4   0.0      7e-09   32.9   0.0    2.1  2  TIGR00418 thrS: threonine--tRNA ligase
    0.00078   15.9   0.0     0.0045   13.4   0.0    2.1  2  TIGR00389 glyS_dimeric: glycine--tRNA ligase
     0.0052   14.4   0.1     0.0091   13.6   0.0    1.4  1  TIGR00011 YbaK_EbsC: YbaK/EbsC protein


Domain annotation for each model (and alignments):
>> TIGR00408  proS_fam_I: proline--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  572.8   0.0  1.6e-175  1.3e-172       3     448 ..     207     653 ..     205     677 .. 0.97

  Alignments for each domain:
  == domain 1    score: 572.8 bits;  conditional E-value: 1.6e-175
   TIGR00408   3 ekeedfseWydqilekaelldyydvkGlvvllpnsfkiwekiqkllddkldeieveevyfPllipeselekEkeHikGFepEvylitqaGkkkLeeklalRPtsEtvlynlykkwvksyrdLPlklnqivnvfRyEkkhtrPllRtrEflfkEaHtlhataeeaeeevlkildlYkelieelLaiPvlvgrksekekFaGaeytvaieaimpdg.ralqiatsHdLgqnFaktFeikfenkegekayayqtsyGlstRvigaliliHsDdkGLvlPpkvapiqvvvipiifkkkenkkvlelarkveekLkkleiRvelderdn.rpGkkfskaElkGiPlrlevgpkdieknavvvlrRdekkKvevsldeleekvkelleelkedlfkkAkelveekvkeveeleeikqalnekkgvvlvalkgeeeleeelkekvkatircieed 448
                  ke +f++Wy+qi+ k+e+++ yd++G+++l+p s++iw  i  +ld k+++ +v++ yfP+++++ +le EkeH++GF+pEv+++t+ G  +L+e++a+RPtsEt++y+ +k w++s+rdLPlklnq++nv+R+E+kh+ P+lRtrEfl++E+Ht+ha  eea+ ev++il++Yk ++eelLa+Pv++g+k+ekekFaG+ yt+++ea++p + ra+q atsH+LgqnF k+F+i++e++eg+k +++q+s+Gl tR ig+++++HsD+kGLvlPp++apiqvv++pi + +++  k   ++++++ +L +++iRv++d+r n +pG+k++ +ElkG+Plrle gpkd+ k ++ v+rRd+++K  v+l  l++kv  +l  ++++l ++A + +++++++v ++e++++a+ e k +vl++++ e+e+ee +k+++ka+ +    +
  MMETSP1137-20121227|4958_1 207 TKEGNFPKWYEQIIIKSEMIEFYDISGCYILRPWSYSIWDAIRDFLDAKIKTLGVQNCYFPMFVSKGKLEAEKEHVEGFAPEVAWVTKSGDGELNEPIAIRPTSETIMYPAFKGWIHSHRDLPLKLNQWNNVVRWEFKHPTPFLRTREFLWQEGHTAHASLEEADVEVMQILEFYKLVYEELLAVPVIKGKKTEKEKFAGGLYTTTVEAFIPITgRAIQGATSHNLGQNFGKMFKIEYEDREGKKSIPWQNSWGLTTRTIGVMVMVHSDNKGLVLPPRIAPIQVVLVPITYTGTDVAKQSSMCDSIAAQLSEAGIRVKVDDRANyNPGWKYNYWELKGVPLRLEFGPKDMDKSQIRVVRRDTNEKDDVPLSILTQKVALMLVTMQHELLERARAERDSNMATVMKWEDFTPAIAEGK-IVLTPFCNETEFEEAVKDRSKAEALAAAGE 653
                 5899****************************************************************************************************************************************************************************************************************766*******************************************************************************99***************************99********************************************************************************************.*********************998875544 PP

>> TIGR00409  proS_fam_II: proline--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.6   0.0   7.1e-10   5.8e-07      36     188 ..     231     388 ..     216     394 .. 0.87
   2 !   54.5   0.0   2.5e-18     2e-15     415     559 ..     430     577 ..     420     586 .. 0.90

  Alignments for each domain:
  == domain 1    score: 26.6 bits;  conditional E-value: 7.1e-10
   TIGR00409  36 asGlynylPlalrvlekvenivreemnkagaievllpalqs.aelWqesgRwdkygeellrlkDrke....refvLgpthEEvitdlvkneiksYkqlPvnlYqiqtKfRDEiRPRfGllRgREFimKDaYsFhsdeeslkatyqkldeaYkkifsrl 188
                  sG y   P ++ + + ++  +  +++  g +++ +p ++s  +l  e +  + +++e+  +  +++       ++ pt E  +    k  i+s ++lP++l q ++  R E +     lR+REF+ +++   h++ e+++ +  ++ e Yk ++++l
  MMETSP1137-20121227|4958_1 231 ISGCYILRPWSYSIWDAIRDFLDAKIKTLGVQNCYFPMFVSkGKLEAEKEHVEGFAPEVAWVTKSGDgelnEPIAIRPTSETIMYPAFKGWIHSHRDLPLKLNQWNNVVRWEFKHPTPFLRTREFLWQEGHTAHASLEEADVEVMQILEFYKLVYEEL 388
                 489999999999999999999999999999999999998884678888999999999998877666511115679*********************************************************************99999999988765 PP

  == domain 2    score: 54.5 bits;  conditional E-value: 2.5e-18
   TIGR00409 415 FkLGtkYskalkatfldeegkeqvlemGCYGiGvsRlvsaivEqkrDekGiiWpkaiAPyevvivvsnvkd...eeqkklaeevyselkakgvdvllDdrne.raGvkfrdseliGiplavvvGkksldnkeiEvkkrrngekqlikka 559
                  +LG+++ k +k+++ d+egk+ +     +G+  +R+++ +v  ++D+kG++ p  iAP +vv+v+         +q+ + + + ++l ++g+ v +Ddr++  +G k +  el G+pl++  G k +d+++i v++r ++ek+ +  +
  MMETSP1137-20121227|4958_1 430 HNLGQNFGKMFKIEYEDREGKKSIPWQNSWGL-TTRTIGVMVMVHSDNKGLVLPPRIAPIQVVLVPITYTGtdvAKQSSMCDSIAAQLSEAGIRVKVDDRANyNPGWKYNYWELKGVPLRLEFGPKDMDKSQIRVVRRDTNEKDDVPLS 577
                 57*****************************9.59*****************************99877543256788899******************976389**************************************987655 PP

>> TIGR00418  thrS: threonine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.5   0.0     3e-09   2.5e-06     192     342 ..     233     388 ..     216     395 .. 0.87
   2 !   32.9   0.0   8.6e-12     7e-09     409     561 ..     422     583 ..     395     586 .. 0.78

  Alignments for each domain:
  == domain 1    score: 24.5 bits;  conditional E-value: 3e-09
   TIGR00418 192 GlvlwlpkGalirklledfvrekllkrgyeevetPiladl.elweisghldkyk.ermfrfkeee...ekelvlkpmnCpghilifksslrsyrdLPlrlaelgvvhRyEksGeLvGLkRvRgftldDaHifct.edQikeEiknalrliqkvlkkl 342
                 G  +  p    i + + df+  k ++ g ++ + P+ +++ +l + ++h++ +  e  + +k+ +   ++ ++++p         fk  ++s+rdLPl+l +   v R E +   + + R R+f  +  H+  + ++ ++ E+ ++l++ + v+++l
  MMETSP1137-20121227|4958_1 233 GCYILRPWSYSIWDAIRDFLDAKIKTLGVQNCYFPMFVSKgKLEAEKEHVEGFApEVAWVTKSGDgelNEPIAIRPTSETIMYPAFKGWIHSHRDLPLKLNQWNNVVRWEFKHP-TPFLRTREFLWQEGHTAHAsLEEADVEVMQILEFYKLVYEEL 388
                 66666677778999*********************9876626778899*****7356677776668889999***************************************965.6788************9888****************999986 PP

  == domain 2    score: 32.9 bits;  conditional E-value: 8.6e-12
   TIGR00418 409 reiqlaTv.QlDfelperfdltyvdedekekrPviiHrailG.sieRfiaiLlEkaagelPlwLaPvQvrvipvse......khldyakkvaeklkkegirvdvddrne.klgkkiReaqkekipyvlvvGdkEveeeavtvRerkeekkekmsleellekv 561
                 r+iq aT   l  + ++ f+++y d ++k+  P     +++  +i  ++++  ++ +  lP  +aP+Qv+++p++       k++ ++ ++a +l+++girv+vddr + + g k    + + +p+ l  G k++++ ++ v +r+ ++k  ++l  l +kv
  MMETSP1137-20121227|4958_1 422 RAIQGATShNLGQNFGKMFKIEYEDREGKKSIPWQNSWGLTTrTIGVMVMVHSDNKGLVLPPRIAPIQVVLVPITYtgtdvaKQSSMCDSIAAQLSEAGIRVKVDDRANyNPGWKYNYWELKGVPLRLEFGPKDMDKSQIRVVRRDTNEKDDVPLSILTQKV 583
                 566666542466778899999999999999999877776655244444444455666677**************8512222255666778****************9773689***************************9999999999999888777766 PP

>> TIGR00389  glyS_dimeric: glycine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.0   5.5e-06    0.0045     461     555 ..     477     577 ..     439     587 .. 0.80
   2 ?   -0.9   0.0      0.12        98     454     490 ..     601     640 ..     585     647 .. 0.76

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 5.5e-06
   TIGR00389 461 evlrlkpkvaPikvlvlplvnk.eel...keiakeiakaLrkeeiiikyddsgs..iGkrYaraDeiGtpfavtiDfetleDetvtlReRdslkqvRvkie 555
                 + l l+p++aPi+v+++p+     ++   +++  +ia +L++ +i++k+dd      G +Y   +  G+p  + +  + ++ + + +  Rd+ ++  v ++
  MMETSP1137-20121227|4958_1 477 KGLVLPPRIAPIQVVLVPITYTgTDVakqSSMCDSIAAQLSEAGIRVKVDDRANynPGWKYNYWELKGVPLRLEFGPKDMDKSQIRVVRRDTNEKDDVPLS 577
                 45889**************8652344111455679****************87756899**9999999999999999999988888888888887766665 PP

  == domain 2    score: -0.9 bits;  conditional E-value: 0.12
   TIGR00389 454 evdeeeRevl...rlkpkvaPikvlvlplvnkeelkeiak 490
                 e d+++ +v+   ++ p +a  k++++p+ n+ e++e  k
  MMETSP1137-20121227|4958_1 601 ERDSNMATVMkweDFTPAIAEGKIVLTPFCNETEFEEAVK 640
                 557777777733358899****************998765 PP

>> TIGR00011  YbaK_EbsC: YbaK/EbsC protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   0.0   1.1e-05    0.0091      26     122 ..      26     128 ..       2     153 .. 0.75

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 1.1e-05
   TIGR00011  26 lkgeeaaeklgvdeeevfKTLvleldkkklvvavipvdeeldlkklAkalgekkve..midlkdaekvtGYvrGGisPlGqkk....klptyidesakqleti 122
                 ++g +a e+ g  + + +K L ++++k++l++  + +d ++d+k l  +lg   ++   +d + +++  G  +G ++Pl+  +     ++ ++d+++++  +i
  MMETSP1137-20121227|4958_1  26 EAGLAACEAGGGLTCTFVKNLFVRDKKHGLYLLSVAADAKVDMKTLPGMLGLSAANfrFADEAILKEKLGVAQGSVTPLAVMNdcagDVKLVLDKKVADAAVI 128
                 667777777777788889******************************9987665422799999***************965511114567777777776666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (706 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        91  (0.0221843); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.55u 0.17s 00:00:00.72 Elapsed: 00:00:00.57
# Mc/sec: 1606.63
//
Query:       MMETSP1137-20121227|4959_1  [L=496]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (496 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       232  (0.0565578); expected 82.0 (0.02)
Passed bias filter:                       96  (0.0234032); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.14s 00:00:00.51 Elapsed: 00:00:00.42
# Mc/sec: 1558.73
//
Query:       MMETSP1137-20121227|4960_1  [L=76]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (76 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        51  (0.012433); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.11s 00:00:00.25 Elapsed: 00:00:00.28
# Mc/sec: 358.26
//
Query:       MMETSP1137-20121227|4961_1  [L=189]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (189 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        51  (0.012433); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.16s 00:00:00.35 Elapsed: 00:00:00.50
# Mc/sec: 498.92
//
Query:       MMETSP1137-20121227|4962_1  [L=581]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      0.003   14.5   0.0      0.003   14.5   0.0    3.6  3  TIGR01622 SF-CC1: splicing factor, CC1-like family
  ------ inclusion threshold ------
      0.079    9.9   0.0      0.079    9.9   0.0    2.0  3  TIGR01628 PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family


Domain annotation for each model (and alignments):
>> TIGR01622  SF-CC1: splicing factor, CC1-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.0   1.4e-06     0.003     403     473 ..      41     129 ..      31     133 .. 0.79
   2 ?  -12.9  36.9         2   4.1e+03       7      69 ..     344     408 ..     328     421 .. 0.46
   3 ?   -3.0  15.9      0.28   5.7e+02      18      76 ..     422     477 ..     413     522 .. 0.52

  Alignments for each domain:
  == domain 1    score: 14.5 bits;  conditional E-value: 1.4e-06
   TIGR01622 403 laseclvLsNmFdp.............ateee.enfdkeikdDvkeEcskkggvvhiyv....dkknsaGkvYlkfdsveaalaavkal 473
                 + s+ ++L+Nm+ p             + e++ +++++e  +D+ eE  + gg  +       +++  aG+vY kf + e+a++a++ l
  MMETSP1137-20121227|4962_1  41 ILSQTILLQNMYLPppqqyddngmpvpQDEDDlQDHFEEFYEDIFEELTNIGGELEQLRvcenLSDHLAGNVYAKFREEEDAEKALQKL 129
                 56889999999988889888888888754544389*************999998776541111334579****************9987 PP

  == domain 2    score: -12.9 bits;  conditional E-value: 2
   TIGR01622   7 reRsRdssreadrdrerdksrersRdr.srdRersr.skerdrdfdrrdrdrdk..yrdrerrsrkr 69 
                 reR+   ++e++r r +d++r+r Rd  +rdR+r r + +rdr   +rdr rd+    +re  + +r
  MMETSP1137-20121227|4962_1 344 REREEREREERRRRRGSDRDRDRRRDDdDRDRDRRRdDDDRDRG--GRDRGRDRggEGGRESSQERR 408
                 33332223344555555555555554213444444433444442..333333330033333322222 PP

  == domain 3    score: -3.0 bits;  conditional E-value: 0.28
   TIGR01622  18 drdrerdksrersRdrsrdRersrskerdrdfdrrdrdrdkyrdrerrsrkrreserer 76 
                  r  erd +r +sR+r ++Rer++s+er+r   r   d+ + ++ +r +  r +++r  
  MMETSP1137-20121227|4962_1 422 GRGDERDGERGGSRERGNSRERGNSRERERGSSR---DGRETSEERRAKIARWNESRGG 477
                 5666888889999999999999999988884444...4333333333333333333333 PP

>> TIGR01628  PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.0   3.9e-05     0.079      17      64 ..      85     131 ..      71     145 .. 0.75
   2 ?   -1.3   0.7     0.096     2e+02     393     435 ..     206     251 ..     172     286 .. 0.53
   3 ?   -6.7   1.8         2   4.1e+03     255     273 ..     340     358 ..     322     366 .. 0.54

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 3.9e-05
   TIGR01628  17 LyelFkevgsvlsvRvCrDsvtrrSLgYaYvNfqnladAerAldtlny 64 
                   el +  g++  +RvC + +  +  g  Y+ f++++dAe+Al++l +
  MMETSP1137-20121227|4962_1  85 FEELTNIGGELEQLRVCENLS-DHLAGNVYAKFREEEDAEKALQKLMV 131
                 2233333367899****9877.8888*****************99865 PP

  == domain 2    score: -1.3 bits;  conditional E-value: 0.096
   TIGR01628 393 gaanisgrhqaaqqqavvtqavk...qqlasqplnfkinqmmlstq 435
                  ++ ++ + qa + q+v  ++++   q+ ++q+l+f+  ++ l ++
  MMETSP1137-20121227|4962_1 206 QTQALPSQTQALPSQTVSLRNQTqalQMSQTQALRFSKLRQYLAQM 251
                 2333444455555554443333200133444455555333333333 PP

  == domain 3    score: -6.7 bits;  conditional E-value: 2
   TIGR01628 255 VgraqkraeReaelkakfe 273
                     ++r+eRe+e +++++
  MMETSP1137-20121227|4962_1 340 ARLEREREEREREERRRRR 358
                 3334555555555555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (581 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        98  (0.0238908); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.14s 00:00:00.61 Elapsed: 00:00:00.66
# Mc/sec: 1161.90
//
Query:       MMETSP1137-20121227|4963_1  [L=751]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.4e-24   83.0  12.5      6e-23   78.9   8.7    2.0  1  TIGR04154 archaeo_STT3: oligosaccharyl transferase, archaeosortase system-associated


Domain annotation for each model (and alignments):
>> TIGR04154  archaeo_STT3: oligosaccharyl transferase, archaeosortase system-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.9   8.7   1.5e-26     6e-23      26     554 ..      19     590 ..       4     593 .. 0.73

  Alignments for each domain:
  == domain 1    score: 78.9 bits;  conditional E-value: 1.5e-26
   TIGR04154  26 gevlfsgnDpwYhlReieytvenf...pntlwFDpytnyPyGtevg..fgpLfdllvAtlalivGlga.....psqetietvalllpvvlgalvvipvYligkrlgd.rktGllaalllavlpgqflsrslvGflDHhiaEvlfstlavlalllalkvaeeeklskerdldalkkplayavlaGialalylltwppavlfvlivgvfvlvqlvldllrgk.speylaivgavallvaavlvlpfiekslelsltsysllqvlallgvalglvllallarlverkdldra...yypaavlglallgl..lvlalvlpslfsllisnllrfffgatat....altiaEaqpllleegelslaralsef.glafllalaglllllyrllkkkskaeelfvlvWsvfilvatltqvRFeYylavnvavlsAyllswll................................leelkkelkkskkskkeketkkask..............................ivvvvllilllvllvpsv......................aaaaaqssgpggankdWedsleWlkenTPdtgldyygiYeekddfdypeesYGVlSWWDYGhwItvigeRipna 554
                    ++ + Dpw+++R ++y++ +        wFD  + yP G+ vg    p  ++   ++  ++G+ a     ps  +++ v+ ++p+ +g+ + + + ++++++ + + +G++a  ++av+p++++ rs+ G +D    E +  t++++++    +  +++k +   d   ++++++y+v+aGia+  ++ +w + v+++ ++g+ ++  +++ ++++k ++ y ++  + +++++ v v+          l+ +  l+ la l+v +g+ +l   + +  +++l+     ++ + ++  +l+gl  +++al    +f  l + + + f+++t t       +aE qp          ++a +++ +    la +g+ + l+++       ++lf++++++++  +  +  R   +l  +++ l +++l++l+                                +           ++kke       +                              +v+v+ ++l + ll +++                      +  a+   g      d +++  Wl++ TP                        V+ WWDYG  I+ +++R  +a
  MMETSP1137-20121227|4963_1  19 YGYVIHEFDPWFNFRATKYLAXENglaAFFKWFDYKVWYPLGRPVGttIYPGMQMTSVFIWKVLGMLAdakvvPSAMSLNDVCCMVPAWFGVSATLALGALTAECSNsWSAGVAASGIMAVVPAHIM-RSVAGGYDN---ESIALTAMCTTFFCWCRALRHDKRV--TDGRPTQDSVIYGVAAGIAYIYMVAAWGGYVFVLNMIGLHAAALVASGRYTSKlHRAYSLFYLIGTFGATRVPVV---------GLAPLRSLEQLAPLLVFVGFQMLEYCEVQRRKRHLSILqlqMLRIKMAIPLLIGLaaVAAALYPTGYFGPLSARVRGLFVKHTRTgnplVDSVAEHQP--------ANEQAYQHYlHHIYHLAPFGFGISLLHWSD-----SNLFLVLYALVAYHFSNKMARLIILLGPVASALGGVCLGFLFdqlllyagkrllvsfapsdkegdtdkekkaeeK----------NDEKKEVP-----AgrkkkgkaalseasahfaalidlvkxeqnrTVLVLRIALGVYLLQQAYpkavefydyshqlaeglsqpqiMXEAKXXXGXXVXXDDXREAYWWLRDXTPXDA--------------------RVMAWWDYGYQINGVANRTSIA 590
                 34677899***********9987723235679************9944333335555666678887653444478889999***********************9964789****************.********6...6666677777777777766666666..689999*********************************998877776666652666667777777777777666.........44556666677777777777777777776677766654211333334333344430044444445778877777777774444431111678999999........334455555155555788899998888755.....99*************************************888889999**********99888766543332221..........11111111.....1122224456667778899999999999998777777777777776666777999999999998888888777777777778899999999999999999888....................3*****************9887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (751 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       133  (0.0324232); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.19s 00:00:00.73 Elapsed: 00:00:00.67
# Mc/sec: 1479.46
//
Query:       MMETSP1137-20121227|4964_1  [L=145]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.034   11.3   0.0      0.045   10.9   0.0    1.1  1  TIGR03028 EpsE: polysaccharide export protein EpsE


Domain annotation for each model (and alignments):
>> TIGR03028  EpsE: polysaccharide export protein EpsE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   1.1e-05     0.045      92     144 ..      54     110 ..      50     114 .. 0.82

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 1.1e-05
   TIGR03028  92 rypleta...krlsdvlala.GGvtpdGadlivlvrkreGkavrkeidvaalfsege 144
                 ++ple     k+ s+vlal+  G     +dl++ v++reGk+v+ + dv   fs g+
  MMETSP1137-20121227|4964_1  54 QFPLEMGrkgKQQSQVLALTtDGSGKARHDLLANVGQREGKIVHSNRDVRFAFSRGN 110
                 79998643347899****97257888899*****************99998887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (145 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        40  (0.00975134); expected 82.0 (0.02)
Passed bias filter:                       37  (0.00901999); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.16u 0.12s 00:00:00.28 Elapsed: 00:00:00.42
# Mc/sec: 455.68
//
Query:       MMETSP1137-20121227|4965_1  [L=263]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (263 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        77  (0.0187713); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.16s 00:00:00.37 Elapsed: 00:00:00.41
# Mc/sec: 846.66
//
Query:       MMETSP1137-20121227|4966_1  [L=264]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (264 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       101  (0.0246221); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.15s 00:00:00.38 Elapsed: 00:00:00.53
# Mc/sec: 657.46
//
Query:       MMETSP1137-20121227|4967_1  [L=453]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0022   14.7   0.0     0.0037   14.0   0.0    1.2  1  TIGR00054 TIGR00054: RIP metalloprotease RseP
  ------ inclusion threshold ------
      0.023   11.5   0.0        2.2    5.0   0.0    2.1  2  TIGR02860 spore_IV_B: stage IV sporulation protein B


Domain annotation for each model (and alignments):
>> TIGR00054  TIGR00054: RIP metalloprotease RseP
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.0   1.8e-06    0.0037     146     258 ..      73     214 ..      69     232 .. 0.78

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 1.8e-06
   TIGR00054 146 edgdeilsvdgkkikdfkdvrkqlaekagevsveila...........erenitleeeke..................lkelgpkielvlsdvvdns..paekaGlkeGDkilkidgeklkswrdlvklvkenpeksleikveR 258
                 ++gd +l+v+g+++ +  ++ ++l e++g v++++l+           +++  ++e+  e                        k ++v+s++  ++  + +k  l++GD+il+i+g+   + +     ++e    ++ i v+R
  MMETSP1137-20121227|4967_1  73 QKGDALLEVNGQQTSGHVHASQLLREAVGRVTLTLLRgastdrvakphQKQRHAFEVV-EfnkskqhhrlglllseskQAVAAGKRDIVISELLFTGvlARKKIALRPGDEILEINGKSFSHHEAASAYLREV-AGTIRILVKR 214
                 589********************************99999999999885554444443.2234467888888866655222344679999998776633677899**************99999998888884.4456666665 PP

>> TIGR02860  spore_IV_B: stage IV sporulation protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.0    0.0011       2.2     132     179 ..      73     118 ..      68     152 .. 0.79
   2 ?    4.4   0.0    0.0016       3.3     130     169 ..     176     214 ..     168     218 .. 0.84

  Alignments for each domain:
  == domain 1    score: 5.0 bits;  conditional E-value: 0.0011
   TIGR02860 132 qvGDlilkvngekikeeedvaklineaggeklkltikRkkkkiekklk 179
                 q GD +l+vng++   + + ++l++ea g+ ++lt+ R+ ++ +++ k
  MMETSP1137-20121227|4967_1  73 QKGDALLEVNGQQTSGHVHASQLLREAVGR-VTLTLLRGAST-DRVAK 118
                 68***********************99875.88999997654.33333 PP

  == domain 2    score: 4.4 bits;  conditional E-value: 0.0016
   TIGR02860 130 giqvGDlilkvngekikeeedvaklineaggeklkltikR 169
                  ++ GD il++ng++  ++e  + +++e  g ++++ +kR
  MMETSP1137-20121227|4967_1 176 ALRPGDEILEINGKSFSHHEAASAYLREVAG-TIRILVKR 214
                 5678****************99999998876.68888888 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (453 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        70  (0.0170648); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.31u 0.15s 00:00:00.46 Elapsed: 00:00:00.46
# Mc/sec: 1299.81
//
Query:       MMETSP1137-20121227|4968_1  [L=173]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (173 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       219  (0.0533886); expected 82.0 (0.02)
Passed bias filter:                      132  (0.0321794); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.14s 00:00:00.36 Elapsed: 00:00:00.89
# Mc/sec: 256.56
//
Query:       MMETSP1137-20121227|4971_1  [L=393]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.6e-59  198.6  13.5    4.3e-59  198.3   9.4    1.1  1  TIGR00817 tpt: Tpt phosphate/phosphoenolpyruvate translocator
    6.3e-13   46.6  20.7    1.1e-12   45.8  14.4    1.4  1  TIGR00950 2A78: carboxylate/amino acid/amine transporter


Domain annotation for each model (and alignments):
>> TIGR00817  tpt: Tpt phosphate/phosphoenolpyruvate translocator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  198.3   9.4   2.1e-62   4.3e-59       2     297 ..      86     392 ..      85     393 .] 0.92

  Alignments for each domain:
  == domain 1    score: 198.3 bits;  conditional E-value: 2.1e-62
   TIGR00817   2 qtgllfllwyvlnvyFnivnkkllklfhypvlktlvslavgvllells..........wssilkkrlkiskallklllpvaivhtighvtsnvslskvavSfthtikalepifsvvlskfflgrefpltlylsLlpivlGvalasltelsfnllgflsamisniefvarnifsKkiltkk...sldklnlyalisililfllspiafiveglklltreflqaiskvnvlklvtvslvaalgifHlyqqvafqllervspltysvgNvlKRvvvIvvSilffetkisflqvlGvilaiaGvflYskvkak 297
                 ++   f++wy++ +++ i+nk++l + + p+  + v+l vg l + l            ++ l   +++  +    ll v  + ++gh+ s+v+ +   v ft ++k  ep+f+ + s+++lg++f l++yl+L+p++ Gv la+ +e+sf++++++s ++sn+ f  r i +K++++k    +l   nly ++++ +l +l+p+a+iveg+ l++ + +++i +v+  k+v  +l        ly+  af  l  v p+t++v+N++KR++vIvvS+l f+ ++++  +lG ++ai+Gv lYs  k+k
  MMETSP1137-20121227|4971_1  86 KIPAAFFMWYAMSIVYSILNKQVLTIWNFPCAFSAVQLLVGGLWISLLwvpvrlpgkqVTVHLRTPPQLTWEEQRKLLTVSSFLALGHLLSTVAPAYGTVAFTNVVKTAEPLFTCLFSAVLLGQTFSLPVYLTLIPVIAGVCLATANEVSFSMISLVSGLLSNVCFAMRAITAKRVMQKPvgsNLTAQNLYGVLTLQALAVLLPFALIVEGPGLIE-GTAETIRNVGGVKFVKMLLCTGV-SHYLYNECAFLALSSVHPVTHAVANTVKRIAVIVVSVLYFRDPLTMTGGLGSAIAIVGVLLYSIAKSK 392
                 66778***********************************999887775667777744456666667777788899******************************************************************************************************559999*******************************9.77888899999999955555555.7779***********************************************************98875 PP

>> TIGR00950  2A78: carboxylate/amino acid/amine transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.8  14.4   5.4e-16   1.1e-12      16     264 .]     114     384 ..      97     384 .. 0.76

  Alignments for each domain:
  == domain 1    score: 45.8 bits;  conditional E-value: 5.4e-16
   TIGR00950  16 lplyfavlrrlifallllLpllrlr.............nslkrll.rllllgalqlgvfyvllflavkkltvaiaalllvlaPlyvtllsdllekervrkkkllAavlalaGivlllsdgnlsislaGlllgllsgisfAlgtvlakrlvkk.eglellqftgfvvlliGal.lllpfalllgpnl....qalpatslqwlallyLgligtllayflynk....glkevdasaasilalleplvallLgllilgetlslvqliggalilaavl 264
                  p +f+++ +l+ +l + L  + +r             ++l +   r ll    +l++  +l ++a  + tva++ ++    Pl++ l+s +l  ++++  + l+++ ++aG v l +++++s+s++ l+ glls+++fA+  + akr+++k  g++l + + ++vl + al +llpfal+ +++     +a +  ++++ + +   l+ t++   lyn     +l +v +++ ++ ++++ ++ +++++l++   l+++  +g a+ +++vl
  MMETSP1137-20121227|4971_1 114 FPCAFSAVQLLVGGLWISLLWVPVRlpgkqvtvhlrtpPQLTWEEqRKLLTVSSFLALGHLLSTVAPAYGTVAFTNVVKTAEPLFTCLFSAVLLGQTFSLPVYLTLIPVIAG-VCLATANEVSFSMISLVSGLLSNVCFAMRAITAKRVMQKpVGSNLTAQNLYGVLTLQALaVLLPFALIVEGPGliegTAETIRNVGG-VKFVKMLLCTGVSHYLYNEcaflALSSVHPVTHAVANTVKRIAVIVVSVLYFRDPLTMTGGLGSAIAIVGVL 384
                 555566666555555443333333334556665555543333322133333344577889999*****************************999*****************.99999******************************99762677777888899******93456777777665411113334445444.555556899********984444789**************************************99999997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (393 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       148  (0.03608); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.31u 0.18s 00:00:00.49 Elapsed: 00:00:00.73
# Mc/sec: 710.57
//
Query:       MMETSP1137-20121227|4972_1  [L=508]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (508 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       108  (0.0263286); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.17s 00:00:00.51 Elapsed: 00:00:00.32
# Mc/sec: 2095.33
//
Query:       MMETSP1137-20121227|4973_1  [L=44]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (44 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        22  (0.00536324); expected 82.0 (0.02)
Passed bias filter:                       22  (0.00536324); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.17s 00:00:00.28 Elapsed: 00:00:00.32
# Mc/sec: 181.49
//
Query:       MMETSP1137-20121227|4974_1  [L=362]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      1e-39  134.3   0.9    1.7e-39  133.6   0.6    1.3  1  TIGR02415 23BDH: acetoin reductases
      9e-35  118.0   2.3    1.1e-34  117.6   1.6    1.1  1  TIGR02632 RhaD_aldol-ADH: rhamnulose-1-phosphate aldolase/alcohol dehydrogenase
    2.3e-34  117.0   0.9    7.4e-34  115.3   0.6    1.8  1  TIGR01830 3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase
    1.4e-33  114.3   2.4    1.8e-33  113.9   1.7    1.1  1  TIGR03971 SDR_subfam_1: oxidoreductase, SDR family
    3.2e-33  113.1   2.8    1.3e-32  111.1   1.9    1.8  1  TIGR01832 kduD: 2-deoxy-D-gluconate 3-dehydrogenase
    1.3e-31  107.6   2.2    2.6e-31  106.6   1.6    1.5  1  TIGR01963 PHB_DH: 3-hydroxybutyrate dehydrogenase
      5e-30  102.5   5.4    1.3e-29  101.1   3.7    1.6  1  TIGR03206 benzo_BadH: 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase
    7.4e-29   98.9   1.9    1.5e-28   97.9   1.3    1.5  1  TIGR01829 AcAcCoA_reduct: acetoacetyl-CoA reductase
    4.4e-23   79.7   3.4    2.4e-22   77.3   2.3    1.9  1  TIGR03325 BphB_TodD: cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase
      1e-15   55.6   3.5    2.6e-15   54.3   2.4    1.7  1  TIGR01831 fabG_rel: putative 3-oxoacyl-(acyl-carrier-protein) reductase
    2.1e-14   51.1   0.4    7.5e-14   49.3   0.3    1.8  1  TIGR02685 pter_reduc_Leis: pteridine reductase
    4.3e-07   27.4   0.0    8.6e-07   26.4   0.0    1.5  1  TIGR01500 sepiapter_red: sepiapterin reductase
    0.00055   16.7   0.1     0.0012   15.6   0.1    1.6  1  TIGR01179 galE: UDP-glucose 4-epimerase
     0.0054   13.7   0.1     0.0095   12.9   0.1    1.3  1  TIGR00507 aroE: shikimate 5-dehydrogenase
     0.0073   13.2   0.4       0.06   10.2   0.3    2.2  1  TIGR01181 dTDP_gluc_dehyt: dTDP-glucose 4,6-dehydratase
  ------ inclusion threshold ------
      0.046   10.7   0.1      0.056   10.4   0.1    1.3  1  TIGR02197 heptose_epim: ADP-glyceromanno-heptose 6-epimerase


Domain annotation for each model (and alignments):
>> TIGR02415  23BDH: acetoin reductases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  133.6   0.6   6.5e-42   1.7e-39       1     231 [.     111     362 .]     111     362 .] 0.80

  Alignments for each domain:
  == domain 1    score: 133.6 bits;  conditional E-value: 6.5e-42
   TIGR02415   1 kvalvtGaaqGiGkaiaerLakdGfavavadln......eetaketakelk........ekgtkavavkldvsdkseveeaveqaveklGeldvlvnnaGvalv.tpileiteeeleklynvnvkgvlfGiqaaaekfkkl......khkGkiinaasiagvegspelsaysstkfavrgltqtaakeLakkgitvnayaPGivktemreeideklaelagkeigekleefsseiklGresePedvaelvsf 231
                 +valvtG+a GiGkai   Lak+G +v+v d +        ++ ++++e +        e+   +v+v+  v++ ++v +av+ ave++G ld+lvnna + +   p+l+  e e ++ + vnvkgv+    aaa++f ++      + +G+i+n as+ g++  p   ay ++k av  +t+  a e  ++gi vna aPG + t    +  +++ae ++ + + + +      +  r  +Pedva+ v+f
  MMETSP1137-20121227|4974_1 111 RVALVTGGASGIGKAICVELAKEGAKVVVLDTRlepiekGSSVLDAMQEAReqenlpetEETLSSVFVHGSVENDADVAAAVKAAVENFGRLDILVNNAAILQLgGPLLSTVESEWDETFGVNVKGVMRCCLAAAQQFLRQspvgedGIRGRIVNIASQHGIVYCPGNLAYGTSKAAVAYMTKQIACEYVQQGIIVNAVAPGRILTGRPGSRVHAEAESKEEQADLRASVARTPHAAIRLGKPEDVAKAVAF 362
                 79*****************************98766644122233333332000111113445799**********************************9876379*******************************865233222578*****************************************************999987666555555555444444444444445558899********98 PP

>> TIGR02632  RhaD_aldol-ADH: rhamnulose-1-phosphate aldolase/alcohol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  117.6   1.6   4.5e-37   1.1e-34     410     613 ..     106     331 ..      98     360 .. 0.85

  Alignments for each domain:
  == domain 1    score: 117.6 bits;  conditional E-value: 4.5e-37
   TIGR02632 410 kelarrvalvtGgasGiGrevarrlvdeGahvvladldaeaaeavaaelvdkfGadkava...............lkldvtdeeavkaafaevalayGGvdivvnnaGia.vskpleeteleeWdlnldilatGyflvareaarllrkq......glggnlvfiasknavvakknalaysaakaaeahlvrllaielaelgirvntvaPdavlrG...sgifagewrek 613
                 + l +rvalvtGgasGiG+++++ l++eGa vv+ d   e +e+    l     a                    ++  v ++  v+aa+++++ ++G +di+vnna i     pl +t ++eWd ++ ++++G    +  aa+++ +q      g+ g +v ias+ ++v  +++lay ++kaa a++ +++a e  ++gi vn+vaP  +l G   s ++a++  ++
  MMETSP1137-20121227|4974_1 106 NRLNGRVALVTGGASGIGKAICVELAKEGAKVVVLDTRLEPIEKGSSVLDAMQEAR---EqenlpeteetlssvfVHGSVENDADVAAAVKAAVENFGRLDILVNNAAILqLGGPLLSTVESEWDETFGVNVKGVMRCCLAAAQQFLRQspvgedGIRGRIVNIASQHGIVYCPGNLAYGTSKAAVAYMTKQIACEYVQQGIIVNAVAPGRILTGrpgSRVHAEAESKE 331
                 57999********************************9999887766655322222...22246678889999989999***************************99862689**********************999999999988743333357789****************************************************98522266666655544 PP

>> TIGR01830  3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  115.3   0.6   2.9e-36   7.4e-34       1     218 [.     113     362 .]     113     362 .] 0.76

  Alignments for each domain:
  == domain 1    score: 115.3 bits;  conditional E-value: 2.9e-36
   TIGR01830   1 alvtGasrgiGkaiakklakegakvviterske..ekaeelaeelke...........agvkaaavkldvsdeeevkelveeveeelgeidilvnnAGitr.DklllrmkeedwdevikvnLkgvfnvtkavlkkmikkr.......sGriinissvvgllGnagqanYaasKaGligltkslakElasrnitvnavaPGfiet.....dmtekls.ekvkkkileqi...p..lkrlgkpeevaaavaf 218
                 alvtG++ giGkai  +lakegakvv+ +++ e  ek +++ ++++e           +  +++ v+  v+++++v ++v++++e++g++dilvnnA i +  + ll   e++wde   vn+kgv +++ a++++ +++        +Gri+ni+s  g++  +g   Y +sKa +  +tk +a E+ +++i vnavaPG i t      + ++ + ++ ++++ +++   p    rlgkpe+va+avaf
  MMETSP1137-20121227|4974_1 113 ALVTGGASGIGKAICVELAKEGAKVVVLDTRLEpiEKGSSVLDAMQEareqenlpeteETLSSVFVHGSVENDADVAAAVKAAVENFGRLDILVNNAAILQlGGPLLSTVESEWDETFGVNVKGVMRCCLAAAQQFLRQSpvgedgiRGRIVNIASQHGIVYCPGNLAYGTSKAAVAYMTKQIACEYVQQGIIVNAVAPGRILTgrpgsRVHAEAEsKEEQADLRASVartPhaAIRLGKPEDVAKAVAF 362
                 79************************9987643222222222222220000111111133456778899******************************873678999****************************9986555555579*****************************************************983222222222220222223333321114225699**********98 PP

>> TIGR03971  SDR_subfam_1: oxidoreductase, SDR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  113.9   1.7   7.1e-36   1.8e-33       1     244 [.     108     362 .]     108     362 .] 0.82

  Alignments for each domain:
  == domain 1    score: 113.9 bits;  conditional E-value: 7.1e-36
   TIGR03971   1 leGkvalitGaarGqGraeavrlaaeGadiiaidl.ceplsdvvtypaatredldetaklvealGrkvlarkadvrkleelravveegveefGrldvvvanaGvlsyg.rafelseeqWdtvldvnlkGvWktvkavvPali......erknGGsiiivssvaglkalpglahyaaakhGlvgltktlanelaeygirvnsihPtsvdtamiepeamrelfakreea.araflpalpvs..glvepedvadvvaw 244
                 l+G+val+tG a G G+a  v la+eGa ++++d   ep+++  +   a +e  ++      +     +  ++ v + +++ a+v+ +ve+fGrld++v+na +l+ g ++    e +Wd++  vn+kGv +++ a+  +++      e +  G i+ ++s  g++  pg+  y ++k  +  +tk +a e  + gi vn++ P  + t    +   +e+ +k+e+a +ra ++ +p     l +pedva++va+
  MMETSP1137-20121227|4974_1 108 LNGRVALVTGGASGIGKAICVELAKEGAKVVVLDTrLEPIEKGSSVLDAMQEAREQENLPETEETLSSVFVHGSVENDADVAAAVKAAVENFGRLDILVNNAAILQLGgPLLSTVESEWDETFGVNVKGVMRCCLAAAQQFLrqspvgEDGIRGRIVNIASQHGIVYCPGNLAYGTSKAAVAYMTKQIACEYVQQGIIVNAVAPGRILTGRPGSRVHAEAESKEEQAdLRASVARTPHAaiRLGKPEDVAKAVAF 362
                 79********************************8456776666555555554443333333334455667899********************************96378899999*********************99993333233455699******************************************************988877777777766654256665555544224889*******997 PP

>> TIGR01832  kduD: 2-deoxy-D-gluconate 3-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  111.1   1.9   5.1e-35   1.3e-32       3     225 ..     108     362 .]     106     362 .] 0.73

  Alignments for each domain:
  == domain 1    score: 111.1 bits;  conditional E-value: 5.1e-35
   TIGR01832   3 leGkvalvtGantGlGqgiavglaeaGadivgvg.is...........elsetqek..vealGrkflslka..dladeeaakalvdeaveeagkidilvnnaGiirred.avefsekdwddvlnvnlkavfllsqavakkllkq......GrkgkiiniasllsfqGGirvpsytasksavaGltkllanewakkginvnaiaPGyletnn.tealradekrna......aileriP..agrwGepedlagaavf 225
                 l+G+valvtG  +G+G++i+v la+ Ga++v  + +            +++e++e+  + ++ ++++s+ +   + + ++++a v+ ave++g++dilvnna i++     +   e++wd+ + vn+k v+  + a+a+++l+q      G +g+i+nias           +y +sk ava +tk +a+e+ ++gi vna+aPG + t     ++ a+++ ++      a ++r P  a r G+ped+a a+ f
  MMETSP1137-20121227|4974_1 108 LNGRVALVTGGASGIGKAICVELAKEGAKVVVLDtRLepiekgssvldAMQEAREQenLPETEETLSSVFVhgSVENDADVAAAVKAAVENFGRLDILVNNAAILQLGGpLLSTVESEWDETFGVNVKGVMRCCLAAAQQFLRQspvgedGIRGRIVNIASQHGIVYCPGNLAYGTSKAAVAYMTKQIACEYVQQGIIVNAVAPGRILTGRpGSRVHAEAESKEeqadlrASVARTPhaAIRLGKPEDVAKAVAF 362
                 89****************************987633311111111111233333321133333344443331156677788999*********************9865267899***************************873332225899******9765555545569*********************************9997524555555433321111114578888434599*****9999876 PP

>> TIGR01963  PHB_DH: 3-hydroxybutyrate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  106.6   1.6     1e-33   2.6e-31       2     232 ..     111     362 .]     110     362 .] 0.78

  Alignments for each domain:
  == domain 1    score: 106.6 bits;  conditional E-value: 1e-33
   TIGR01963   2 kvalvtGaasGiglaiakelaaaGakvvvndle..............eeaaeaaakeleeaggevlalkadvtkeeeiadlieavaaefgsldiLvnnAGi.qhvapieefptekfekiiavnltsafhtiraalpimkkqg.......wGriiniasvhglvasafKsaYvaaKHglvGltKvlAlEvAetgitanaicPgyvrtpLvekqiadqaktrgiseeqvvkevllkkqptkrfvtveevaelalf 232
                 +valvtG asGig+ai  ela++Gakvvv d++              +ea+e+ +   +e++ + + ++  v + +++a  ++a++++fg+ldiLvnnA i q   p+ +  + ++++   vn+++ ++   aa  +  +q        +Gri+nias hg v  +   aY ++K ++  +tK +A E  ++gi +na++Pg + t      ++ +a  ++ +  +    v  ++++  r+ ++e+va++++f
  MMETSP1137-20121227|4974_1 111 RVALVTGGASGIGKAICVELAKEGAKVVVLDTRlepiekgssvldamQEAREQENLPETEETLSSVFVHGSVENDADVAAAVKAAVENFGRLDILVNNAAIlQLGGPLLSTVESEWDETFGVNVKGVMRCCLAAAQQFLRQSpvgedgiRGRIVNIASQHGIVYCPGNLAYGTSKAAVAYMTKQIACEYVQQGIIVNAVAPGRILTGRPGSRVHAEAESKEEQ-ADLRASVARTPHAAIRLGKPEDVAKAVAF 362
                 89****************************9987677555555422112222222223556667777788999*************************98659999*******************99988766655443322122223489******************************************************988888888777766533.34455566666666777777777777665 PP

>> TIGR03206  benzo_BadH: 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  101.1   3.7   5.1e-32   1.3e-29       2     228 ..     109     362 .]     108     362 .] 0.77

  Alignments for each domain:
  == domain 1    score: 101.1 bits;  conditional E-value: 5.1e-32
   TIGR03206   2 kdkvaivtgggggiggaicrrfaeegakvavldlnaeaaek...vaaairekggk.........aea..vavditdrasvdaavaaaeealgpvdvlvnnagwdvl.kpflktekaewerliainltgalymhhavlkgmverk.......agrivniasdaarvgssgeavyaackgglvafsktlarelarhgitvnvvcpgptdtall.edvkseaekpe...klieaftrai.plgrlgkpddlagailf 228
                 +++va+vtgg+ gig aic  +a+egakv vld  +e  ek   v +a++e+  +           +  v   + + a v aav aa e +g  d+lvnna   +l +p+l+t ++ew+    +n++g +    a ++ ++ +        +grivnias+ + v   g+  y + k  +  ++k +a e+ ++gi vn v pg   t      v +eae  e    l+ + +r+     rlgkp+d+a a++f
  MMETSP1137-20121227|4974_1 109 NGRVALVTGGASGIGKAICVELAKEGAKVVVLDTRLEPIEKgssVLDAMQEAREQenlpeteetLSSvfVHGSVENDADVAAAVKAAVENFGRLDILVNNAAILQLgGPLLSTVESEWDETFGVNVKGVMRCCLAAAQQFLRQSpvgedgiRGRIVNIASQHGIVYCPGNLAYGTSKAAVAYMTKQIACEYVQQGIIVNAVAPGRILTGRPgSRVHAEAESKEeqaDLRASVARTPhAAIRLGKPEDVAKAVAF 362
                 6899******************************9998876333555555543321111111112221144567888999********************998666379*********************9999998877654322222348****************************************************9888654134444554433111566666665313469**********998 PP

>> TIGR01829  AcAcCoA_reduct: acetoacetyl-CoA reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.9   1.3   5.9e-31   1.5e-28       1     220 [.     111     362 .]     111     362 .] 0.72

  Alignments for each domain:
  == domain 1    score: 97.9 bits;  conditional E-value: 5.9e-31
   TIGR01829   1 rvalvtGglgGiGtaickrlakdGykvva...nvap.ne.....erakewlqekevegfd....vavvkadvssfeeakaavakveaelGpvdvlvnnaGitr.davfkkmtkeqWeevidtnlnsvfnvtrpviegmlerg.......fGriinissvnGlkGqfGqanysaakaGliGftkalaqegakkgvtvnviaPGyiat....emvkavre......dvlkkivaqiPvk..rlgkpeeiaaavaf 220
                 rvalvtGg  GiG+aic +lak+G kvv     ++p ++     ++ +e  +++++ +++     ++v++ v +  + +aav+   ++ G++d+lvnna i +    +    + +W+e   +n+++v+       ++ l ++        Gri+ni+s  G+    G   y ++ka +  +tk +a e  ++g+ vn++aPG i t      v+a  e      d+++  va  P    rlgkpe++a+avaf
  MMETSP1137-20121227|4974_1 111 RVALVTGGASGIGKAICVELAKEGAKVVVldtRLEPiEKgssvlDAMQEAREQENLPETEetlsSVFVHGSVENDADVAAAVKAAVENFGRLDILVNNAAILQlGGPLLSTVESEWDETFGVNVKGVMRCCLAAAQQFLRQSpvgedgiRGRIVNIASQHGIVYCPGNLAYGTSKAAVAYMTKQIACEYVQQGIIVNAVAPGRILTgrpgSRVHAEAEskeeqaDLRA-SVARTPHAaiRLGKPEDVAKAVAF 362
                 8*************************98522233343221111133344444555544431111456789999999*************************87345566777889***********9987655554444332111122369*****************************************************994333245544331111113333.3455564334************98 PP

>> TIGR03325  BphB_TodD: cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.3   2.3   9.5e-25   2.4e-22       2     193 ..     107     320 ..     106     343 .. 0.80

  Alignments for each domain:
  == domain 1    score: 77.3 bits;  conditional E-value: 9.5e-25
   TIGR03325   2 klkdevvlvtggasglgralvdrfvaegarvavld.......ksaagleeleaahgdk..........vvgvegdvrllddhkeavarcveafgkldtlipnagiwdystalvdipddrideafdevfeinvkgyllavkaa.lpalvas.......rgsviftvsnagfypngggalytaakhavvglvkelayelapy.vrvngvapgglstdlrg 193
                 +l+++v+lvtggasg+g+a+      ega+v vld       k +  l+++++a  ++           v v+g v   +d   av+  ve+fg+ld+l++na i +   +l+      ++  +de f +nvkg + +  aa    l +s       rg ++   s+ g+    g   y ++k av  + k++a e+  + + vn vapg + t   g
  MMETSP1137-20121227|4974_1 107 RLNGRVALVTGGASGIGKAICVELAKEGAKVVVLDtrlepieKGSSVLDAMQEAREQEnlpeteetlsSVFVHGSVENDADVAAAVKAAVENFGRLDILVNNAAILQLGGPLLST----VESEWDETFGVNVKGVMRCCLAAaQQFLRQSpvgedgiRGRIVNIASQHGIVYCPGNLAYGTSKAAVAYMTKQIACEYVQQgIIVNAVAPGRILTGRPG 320
                 799*******************************93222222233345555554432211111122225779****************************************975....677899999********9876551566777766666678999*9*******99999*********************976549********99987655 PP

>> TIGR01831  fabG_rel: putative 3-oxoacyl-(acyl-carrier-protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.3   2.4     1e-17   2.6e-15       2     218 ..     114     362 .]     113     362 .] 0.70

  Alignments for each domain:
  == domain 1    score: 54.3 bits;  conditional E-value: 1e-17
   TIGR01831   2 lvtgasrgigraialklaadgfeiavhyrs.dra.daeesvaairaq...........ggnarllkfdvadrvavrevleadiaehgayygvvlnagiard.aafpalseedwdavietnldgfynvihplvmpmirark.g.....griitlasvsgvmgnrgqvnysaakagligatkalavelakrkitvnciapglidte.....mva.....evekdlkealklvpmk..rvgkaeevaalaaf 218
                 lvtg + gig+ai ++la +g ++ v   + +   +  ++++a++               ++ +++  v +   v ++++a +++ g    +v na i +    + +  e +wd  +  n+ g           ++r    g     gri+ +as  g++   g++ y ++ka +   tk +a e  ++ i vn +apg i t+     + a     e++ dl+ ++   p    r+gk+e+va  +af
  MMETSP1137-20121227|4974_1 114 LVTGGASGIGKAICVELAKEGAKVVVLDTRlEPIeKGSSVLDAMQEAreqenlpeteeTLSSVFVHGSVENDADVAAAVKAAVENFGRLDILVNNAAILQLgGPLLSTVESEWDETFGVNVKGVMRCCLAAAQQFLRQSPvGedgirGRIVNIASQHGIVYCPGNLAYGTSKAAVAYMTKQIACEYVQQGIIVNAVAPGRILTGrpgsrVHAeaeskEEQADLRASVARTPHAaiRLGKPEDVAKAVAF 362
                 8*********************998754331332123333444432201111111110223345677899999***********************997641445566799***********98877666655555432111222449****************************************************9886222222221111123345666677777533489999999988876 PP

>> TIGR02685  pter_reduc_Leis: pteridine reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.3   0.3   2.9e-16   7.5e-14       3     207 ..     112     315 ..     110     360 .. 0.75

  Alignments for each domain:
  == domain 1    score: 49.3 bits;  conditional E-value: 2.9e-16
   TIGR02685   3 aalvtGaakriGrsiavklhqeGyrvvlhyrrsa..eaasslaaelnaeransavv.vkadlsnsa.....sllssceeiidacfrafGrcdvlvnnasaf.yptpllrgdaeegaaekkslevqvaelfGsn.aiaplllikafaqrqkgtraelrssnlsivnlvdamtdqpllgfslytmakealeGltrsaalelaslqirvngvapGlsl 207
                 +alvtG+a  iG++i v+l +eG +vv+   r +  e+ ss+ + + ++r +  +  ++  ls +         +   + ++a+  +fGr d+lvnna+      pll   ++e    +++  v+v  ++ +  a a  +l ++             +    ivn++       ++g   y  +k a+  +t+  a e   ++i vn+vapG  l
  MMETSP1137-20121227|4974_1 112 VALVTGGASGIGKAICVELAKEGAKVVVLDTRLEpiEKGSSVLDAMQEAREQENLPeTEETLSSVFvhgsvENDADVAAAVKAAVENFGRLDILVNNAAILqLGGPLLSTVESE---WDETFGVNVKGVMRCClAAAQQFLRQS--------PVGEDGIRGRIVNIASQHGIVYCPGNLAYGTSKAAVAYMTKQIACEYVQQGIIVNAVAPGRIL 315
                 89************************9987765433788899999999888776641344444443444322234456789999**************9862578999876666...344555555554433213333333322........22233455569*****9999***************************************9644 PP

>> TIGR01500  sepiapter_red: sepiapterin reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.4   0.0   3.4e-09   8.6e-07       2     199 ..     112     317 ..     111     341 .. 0.64

  Alignments for each domain:
  == domain 1    score: 26.4 bits;  conditional E-value: 3.4e-09
   TIGR01500   2 lllvtGasrGfGrelaqelakrlkaegsvlvLlaR.........ndeaLkeskaeie..aevsalsvdlvsldleaakdvedllkaleesikkeeyeri.llinnaGtlgdvskrekelsDsknvqkyydsnvt....slvvltsellkklkelq.glektvvnlssLcaikpfkswalYCaskaaRdmffqvLaleek.edvkvLnYapGvlDtd 199
                 ++lvtG + G+G+++  elak       v+vL +R          ++a++e++++ +   + + ls + v   +e+ +dv   +ka       e++ r+ +l+nna  l  ++          + ++ +  nv       ++ + ++l++ +  + g+   +vn++s   i   ++   Y +skaa   + + +a e+  + + v   apG + t 
  MMETSP1137-20121227|4974_1 112 VALVTGGASGIGKAICVELAKE---GAKVVVLDTRlepiekgssVLDAMQEAREQENlpETEETLSSVFVHGSVENDADVAAAVKAAV-----ENFGRLdILVNNAAILQ-LGGPLLST-VESEWDETFGVNVKgvmrCCLAAAQQFLRQSPVGEdGIRGRIVNIASQHGIVYCPGNLAYGTSKAAVAYMTKQIACEYVqQGIIVNAVAPGRILTG 317
                 79*******************3...333444444422111111134566665543222255666666677777777777777666654.....56667635666666554.44333212.223345555555551001445566778888886645******************************************966677777899988775 PP

>> TIGR01179  galE: UDP-glucose 4-epimerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.1   4.5e-06    0.0012       3      38 ..     114     149 ..     112     199 .. 0.69

  Alignments for each domain:
  == domain 1    score: 15.6 bits;  conditional E-value: 4.5e-06
   TIGR01179   3 LvtGgaGyiGshvvrqllekgkevvvlDnlskgske 38 
                 LvtGga  iG  ++++l ++g++vvvlD   +  ++
  MMETSP1137-20121227|4974_1 114 LVTGGASGIGKAICVELAKEGAKVVVLDTRLEPIEK 149
                 9***************************76554443 PP

>> TIGR00507  aroE: shikimate 5-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.9   0.1   3.7e-05    0.0095     112     178 ..     106     175 ..      96     193 .. 0.80

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 3.7e-05
   TIGR00507 112 sklksekrvlii.GAGGaakavaleLlkadkeviiaNRt...vekaeelaerlqelgeilalsleevelkk 178
                 ++l+ ++ +l+  GA G +ka+ +eL+k++ +v+++       ek+  +++++qe  e+  l++ e  l++
  MMETSP1137-20121227|4974_1 106 NRLN-GRVALVTgGASGIGKAICVELAKEGAKVVVLDTRlepIEKGSSVLDAMQEAREQENLPETEETLSS 175
                 5556.3444443389*******************9985412258999********9999999988877766 PP

>> TIGR01181  dTDP_gluc_dehyt: dTDP-glucose 4,6-dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.2   0.3   0.00023      0.06       3     169 ..     114     299 ..     112     312 .. 0.60

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 0.00023
   TIGR01181   3 LvtGGaGfiGsnfvryileetpdaevv............vlDkLtyagnkenlkdledeerysfvkgdiadrelverllkee.....dvdavvnfaaeshvDrsisep.....eafietnvvGtytlleavrkelkevrllhistDevyGdlekddaeftettplaPss.Pysaskaasdllvrayarty 169
                 LvtGGa  iG ++   + +e +++ v+            vlD+++ a ++enl + e++    fv+g++ + ++v+  +k       + d++vn aa       + ++      +    nv G+++   a+ +  + +r   +  D + G + +    ++    + P +  y  skaa   + +  a  y
  MMETSP1137-20121227|4974_1 114 LVTGGASGIGKAICVELAKEGAKVVVLdtrlepiekgssVLDAMQEAREQENLPETEETLSSVFVHGSVENDADVAAAVKAAvenfgRLDILVNNAAILQLGGPLLSTvesewDETFGVNVKGVMRCCLAAAQ--QFLRQSPVGEDGIRGRIVNI--ASQHGIVYCPGNlAYGTSKAAVAYMTKQIACEY 299
                 8999999999998877777665443323333333333337899999***********************9988887777643111234677777777665554433221100123344566666665555544..35566666666666666666..234455566533256666666666666555555 PP

>> TIGR02197  heptose_epim: ADP-glyceromanno-heptose 6-epimerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.1   0.00022     0.056       2      33 ..     114     144 ..     113     302 .. 0.75

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 0.00022
   TIGR02197   2 ivTGgaGfiGsnlvaalnekgetdilvvDklr 33 
                 +vTGga  iG ++ ++l ++g ++++v+D+  
  MMETSP1137-20121227|4974_1 114 LVTGGASGIGKAICVELAKEG-AKVVVLDTRL 144
                 7******************99.7899999633 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (362 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       210  (0.0511945); expected 82.0 (0.02)
Passed bias filter:                      153  (0.0372989); expected 82.0 (0.02)
Passed Vit filter:                        34  (0.00828864); expected 4.1 (0.001)
Passed Fwd filter:                        16  (0.00390054); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              16  [number of targets reported over threshold]
# CPU time: 0.54u 0.15s 00:00:00.69 Elapsed: 00:00:00.80
# Mc/sec: 597.25
//
Query:       MMETSP1137-20121227|4975_1  [L=239]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (239 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       109  (0.0265724); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.13s 00:00:00.33 Elapsed: 00:00:00.50
# Mc/sec: 630.91
//
Query:       MMETSP1137-20121227|4976_1  [L=157]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (157 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        76  (0.0185275); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.12s 00:00:00.29 Elapsed: 00:00:00.28
# Mc/sec: 714.56
//
Query:       MMETSP1137-20121227|4977_1  [L=152]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (152 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        47  (0.0114578); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.14s 00:00:00.30 Elapsed: 00:00:00.31
# Mc/sec: 647.17
//
Query:       MMETSP1137-20121227|4978_1  [L=463]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   5.2e-131  435.0   2.3   7.2e-131  434.6   1.6    1.1  1  TIGR01415 trpB_rel: pyridoxal-phosphate dependent TrpB-like enzyme
    1.6e-37  127.3   0.1    4.4e-36  122.6   0.1    2.5  1  TIGR00263 trpB: tryptophan synthase, beta subunit
    5.9e-06   23.8   0.0    1.2e-05   22.9   0.0    1.4  1  TIGR01138 cysM: cysteine synthase B
    9.1e-05   19.5   0.0    0.00015   18.7   0.0    1.3  1  TIGR03945 PLP_SbnA_fam: 2,3-diaminopropionate biosynthesis protein SbnA
    0.00013   19.3   0.3    0.00071   16.8   0.0    2.1  3  TIGR01136 cysKM: cysteine synthases
      0.002   15.3   0.1      0.025   11.7   0.0    2.5  2  TIGR01139 cysK: cysteine synthase A


Domain annotation for each model (and alignments):
>> TIGR01415  trpB_rel: pyridoxal-phosphate dependent TrpB-like enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  434.6   1.6  1.1e-133  7.2e-131      84     416 ..     106     428 ..      89     431 .. 0.96

  Alignments for each domain:
  == domain 1    score: 434.6 bits;  conditional E-value: 1.1e-133
   TIGR01415  84 kariyyksesvsptGshkintaiaqayyakkeGvkrlvtetGaGqWGsalslaaalldlkvkvfmvrvsfkqkpyrkllmelygaevipsPseltevGrkvlkedpehPGslGlaiseaieealeee.dakyslGsvlnhvllhqtviGleakkqleeagekPdvivgcvGGGsnfaglafPfvadklsGkedlkfiaaeskaaPkltkGeyrydfgdsagllPllkmytlGhdfvppavhagGlryhgvaPtlsllvkkGlveaeaydqeevfeaavlfakaeGivPaPesahaiavaideakkareegkekvilfslsGhGlldlkayeeal 416
                  ++i+yk+e+vsp+Gshk nta+aqayy+k+ G +r++tetGaGqWGsal+ ++a ++l v+v+ v+vs++qkpyrk ++e+ ga++ psPs +t++G k+l  dp+ PGslG+aiseaie ++ ++  aky lGsvl hvl+hqtviG ea kq+ ++ge+Pdv+vgc GGGsnfag+afPf+ +k++ +          + a +ltkG y ydfgd+a+++Pl+k +tlG  f+pp+vh+gGlryh++aP +s l +   +ea+a++q+ +f+a   f k+eGi+PaPe++hai+ a  ea+ka   g   ++lf++ GhG +d+ a++++ 
  MMETSP1137-20121227|4978_1 106 TVKIFYKYEGVSPSGSHKTNTAVAQAYYNKEAGTQRITTETGAGQWGSALAWSGAQFGLPVEVYQVKVSYEQKPYRKAFIEACGADIYPSPSMKTQAGAKILATDPDCPGSLGIAISEAIEACVTSGgTAKYALGSVLSHVLMHQTVIGEEAIKQMALVGEYPDVVVGCTGGGSNFAGIAFPFLGEKFRQE----------AXAXSLTKGVYAYDFGDTAQMTPLIKSHTLGASFMPPSVHSGGLRYHAMAPLISHLKQLDAIEARAVQQTAAFNAGDSFFKSEGILPAPEATHAIEGALVEARKAAAAG-GGTVLFNMCGHGHFDMFAWQKYA 428
                 49************************************************************************************************************************99775278********************************************************99877..........56789****************************************************************************************************9998.789*****************996 PP

>> TIGR00263  trpB: tryptophan synthase, beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  122.6   0.1   6.4e-39   4.4e-36      64     383 ..     105     426 ..      97     428 .. 0.80

  Alignments for each domain:
  == domain 1    score: 122.6 bits;  conditional E-value: 6.4e-39
   TIGR00263  64 ggakiylkredllhtGahkinnalgqallakrlGkkriiaetGaGqhGvatataaallglecevymGaedverqklnvfrmellgakvvp.....vtsGsktlkd..........avnealrdWvtsvedthyvlGsavGphPfPeivrefqsvigeevkeqilekegrlPdaviacvGGGsnaiGifaafiedeeveligveagGkGidtekhaatlskGkeGvlhGaktkllqde.dGqieeahsv.saGldypgvgPehaalaetgraeyeaitdeealealkllskeeGiipalesshal..aaleklapklkkdeivvvnlsGrGdkdletvak 383
                 + +ki+ k e +  +G+hk+n a++qa   k+ G +ri +etGaGq G a a  +a++gl +evy  +   e++      +e  ga++ p      + G k l            a++ea+ + vts  ++ y lGs++        v   q+vigee+ +q++   g+ Pd+v+ c GGGsn  Gi  +f+ ++    +  ea    + +   a  +    +     ++t l++ +  G      sv s Gl y +++P  ++l++ + +e +a++ ++a++a   + k+eGi+pa e++ha+  a +e  +++ +   +v+ n++G G  d++  +k
  MMETSP1137-20121227|4978_1 105 DTVKIFYKYEGVSPSGSHKTNTAVAQAYYNKEAGTQRITTETGAGQWGSALAWSGAQFGLPVEVYQVKVSYEQKPYRKAFIEACGADIYPspsmkTQAGAKILATdpdcpgslgiAISEAIEACVTSGGTAKYALGSVLS------HVLMHQTVIGEEAIKQMAL-VGEYPDVVVGCTGGGSNFAGIAFPFLGEK----FRQEAXAXSLTKGVYAYDFG--DT----AQMTPLIKSHtLGASFMPPSVhSGGLRYHAMAPLISHLKQLDAIEARAVQQTAAFNAGDSFFKSEGILPAPEATHAIegALVEARKAAAAGGGTVLFNMCGHGHFDMFAWQK 426
                 5689*************************************************************999988877777777888888887622222345655443222233333339**********************95......47889***********987.788***********************999....44455444444433333332..22....1334455543146555555654789****************************************************5445566666667899**************97665 PP

>> TIGR01138  cysM: cysteine synthase B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.9   0.0   1.7e-08   1.2e-05      15     125 ..      99     209 ..      89     212 .. 0.84

  Alignments for each domain:
  == domain 1    score: 22.9 bits;  conditional E-value: 1.7e-08
   TIGR01138  15 krllpeedsevlvklegnnpaGsvkdrpalsmiveaekrGeikeGdvlieatsGntGialamvaalkGykvkllmpdnvsee...rkaalkayGaelilvdkeeGmeGardlar 125
                 krl+  + ++++ k eg  p+Gs k  +a++     +  G      +  e+ +G  G ala  +a  G++v++   + + e+   rka ++a Ga+++     +   Ga+ la+
  MMETSP1137-20121227|4978_1  99 KRLAXPDTVKIFYKYEGVSPSGSHKTNTAVAQAYYNKEAGT---QRITTETGAGQWGSALAWSGAQFGLPVEVYQVKVSYEQkpyRKAFIEACGADIYPSPSMKTQAGAKILAT 209
                 677777899*******************9887666666665...568899*********************9876544333234499************999999999999886 PP

>> TIGR03945  PLP_SbnA_fam: 2,3-diaminopropionate biosynthesis protein SbnA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.0   2.3e-07   0.00015      16     105 ..     101     190 ..      96     201 .. 0.78

  Alignments for each domain:
  == domain 1    score: 18.7 bits;  conditional E-value: 2.3e-07
   TIGR03945  16 lfedekvelfaKlEglnpagSvKdrtAlallekaikegeikpgttiiESsSGnlaiaLamvcaalGlkficvvDpkis....eanlkllralga 105
                 l   ++v++f K Eg++p+gS K  tA+    +a  ++e   +    E   G  + aLa   a++Gl +  v   k+s    +  +++++a+ga
  MMETSP1137-20121227|4978_1 101 LAXPDTVKIFYKYEGVSPSGSHKTNTAV---AQAYYNKEAGTQRITTETGAGQWGSALAWSGAQFGLPV-EVYQVKVSyeqkPYRKAFIEACGA 190
                 5667789******************995...6888888999999999*******************974.444444441111334555666665 PP

>> TIGR01136  cysKM: cysteine synthases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0     1e-06   0.00071      17     122 ..     103     208 ..      97     212 .. 0.83
   2 ?   -3.7   0.0       1.8   1.3e+03     148     266 ..     249     281 ..     244     286 .. 0.46
   3 ?   -0.7   0.0      0.22   1.5e+02     234     279 ..     360     405 ..     343     418 .. 0.74

  Alignments for each domain:
  == domain 1    score: 16.8 bits;  conditional E-value: 1e-06
   TIGR01136  17 eelkaevlvKlEsrnPsgSvKdRialsmildAekrgllkkgktiieatSGNtGiaLAmvaaakgyklilvmpetmslE....RrkllkayGaelvlteaeegmkgaieka 122
                    +++++ K E+  PsgS K  +a+    +A  +++   ++   e+ +G  G aLA  +a+ g+ + +   + +s E    R++ ++a Ga+++ +++++   ga   a
  MMETSP1137-20121227|4978_1 103 XPDTVKIFYKYEGVSPSGSHKTNTAV---AQAYYNKEAGTQRITTETGAGQWGSALAWSGAQFGLPVEVYQVK-VSYEqkpyRKAFIEACGADIYPSPSMKTQAGAKILA 208
                 556799***************99996...5777777777888889********************99887654.44443455999**********999999999986555 PP

  == domain 2    score: -3.7 bits;  conditional E-value: 1.8
   TIGR01136 148 HrkttgpEilkdtdgkidafvagvGtgGtitGvgrvlkekkpnvkivavePaespvlsegkpgphkiqgigagfiPkildeelldevikvededaietarrlakeegilvGiSsGaava 266
                 H++  g+E +k++                                                                                        + +   ++vG   G+  +
  MMETSP1137-20121227|4978_1 249 HQTVIGEEAIKQMA--------------------------------------------------------------------------------------LVGEYPDVVVGCTGGGSNF 281
                 55555555555553......................................................................................3333333444444333333 PP

  == domain 3    score: -0.7 bits;  conditional E-value: 0.22
   TIGR01136 234 vikvededaietarrlakeegilvGiSsGaavaaalkvakkleked 279
                   +v+++ a++    + k+egil    +  a+  al  a+k+++++
  MMETSP1137-20121227|4978_1 360 ARAVQQTAAFNAGDSFFKSEGILPAPEATHAIEGALVEARKAAAAG 405
                 34799999***************99999999988888887776644 PP

>> TIGR01139  cysK: cysteine synthase A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.7   0.0   3.6e-05     0.025      16     118 ..     102     204 ..      98     296 .. 0.86
   2 ?   -0.7   0.0      0.21   1.4e+02     236     276 ..     362     402 ..     346     417 .. 0.79

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 3.6e-05
   TIGR01139  16 aeeakaevlvkleslnPsssvkdrialamiedaekegllkkgktiveatsGntGialamvaaargykliltmpetmsle....rrkllkayGaelvLtdgaegmkga 118
                 a + +++++ k e + Ps+s k  +a+    +a  ++    ++   e+ +G  G ala  +a+ g+ + +  + ++s e    r+++++a Ga++   ++ +  +ga
  MMETSP1137-20121227|4978_1 102 AXPDTVKIFYKYEGVSPSGSHKTNTAV---AQAYYNKEAGTQRITTETGAGQWGSALAWSGAQFGLPVEVYQV-KVSYEqkpyRKAFIEACGADIYPSPSMKTQAGA 204
                 5667899***************99885...57777777777888899******************98866544.445553444889999999999888887777765 PP

  == domain 2    score: -0.7 bits;  conditional E-value: 0.21
   TIGR01139 236 kvsdeeaietarrlakeeGilvGissGaavaaalkvakkle 276
                 +v++  a++ +    k+eGil    +  a+  al  a+k++
  MMETSP1137-20121227|4978_1 362 AVQQTAAFNAGDSFFKSEGILPAPEATHAIEGALVEARKAA 402
                 68999999999**********99988888888887777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (463 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       101  (0.0246221); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.38u 0.17s 00:00:00.55 Elapsed: 00:00:00.79
# Mc/sec: 773.56
//
Query:       MMETSP1137-20121227|4979_1  [L=512]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.2e-05   20.3   0.3    3.3e-05   19.7   0.2    1.1  1  TIGR03903 TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein


Domain annotation for each model (and alignments):
>> TIGR03903  TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.2   7.9e-09   3.3e-05      25     115 ..      59     149 ..      50     157 .. 0.89

  Alignments for each domain:
  == domain 1    score: 19.7 bits;  conditional E-value: 7.9e-09
   TIGR03903  25 FrReialCarL.shPnivaLlDsGeaedgllFavFeyveGrtlrevLaadGaLpaaetgrLmlqvLDalaaahdaGvvhRDLkPqnimvsaa 115
                 F++e++    L sh ++v+++   ea    l  + e+ +G    +++a  G+L   +  +++lq  Dal + h++ +v   L+P+ +++  +
  MMETSP1137-20121227|4979_1  59 FHKEVSPTPDLpSHRHVVNVIALQEAAG-QLLEMRELCAGGEFFDLIAERGPLEESDVLEILLQLCDALVHCHSHSLVNGQLRPEHVLLDDE 149
                 6777776666657*********999986.8889******************************************************98655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (512 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        88  (0.0214529); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.16s 00:00:00.50 Elapsed: 00:00:00.59
# Mc/sec: 1145.40
//
Query:       MMETSP1137-20121227|4980_1  [L=149]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0014   15.8   0.1     0.0032   14.6   0.0    1.6  2  TIGR01934 MenG_MenH_UbiE: ubiquinone/menaquinone biosynthesis methyltransferase


Domain annotation for each model (and alignments):
>> TIGR01934  MenG_MenH_UbiE: ubiquinone/menaquinone biosynthesis methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.0   7.7e-07    0.0032     123     146 ..       3      26 ..       1      43 [. 0.87
   2 ?   -2.8   0.0      0.16   6.7e+02     196     211 ..      61      76 ..      58      79 .. 0.78

  Alignments for each domain:
  == domain 1    score: 14.6 bits;  conditional E-value: 7.7e-07
   TIGR01934 123 ekaLkelaRVlkpggrlvilefsk 146
                 + ++ e++RVlkpggr++il+   
  MMETSP1137-20121227|4980_1   3 RAVMAEVFRVLKPGGRVCILDAVM 26 
                 5789****************9865 PP

  == domain 2    score: -2.8 bits;  conditional E-value: 0.16
   TIGR01934 196 allkeagfeevryrsl 211
                 + +++agfe v+ ++ 
  MMETSP1137-20121227|4980_1  61 RCMEKAGFEIVSSEDA 76 
                 6799999999987765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (149 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        98  (0.0238908); expected 82.0 (0.02)
Passed bias filter:                       96  (0.0234032); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.18u 0.11s 00:00:00.28 Elapsed: 00:00:00.28
# Mc/sec: 678.15
//
Query:       MMETSP1137-20121227|4981_1  [L=181]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (181 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        43  (0.0104827); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.17s 00:00:00.36 Elapsed: 00:00:00.32
# Mc/sec: 746.56
//
Query:       MMETSP1137-20121227|4983_1  [L=374]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (374 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        86  (0.0209654); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.12s 00:00:00.39 Elapsed: 00:00:00.39
# Mc/sec: 1265.74
//
Query:       MMETSP1137-20121227|4984_1  [L=403]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (403 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       111  (0.02706); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.18s 00:00:00.50 Elapsed: 00:00:00.38
# Mc/sec: 1399.78
//
Query:       MMETSP1137-20121227|4985_1  [L=80]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (80 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        28  (0.00682594); expected 82.0 (0.02)
Passed bias filter:                       26  (0.00633837); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.12s 00:00:00.25 Elapsed: 00:00:00.25
# Mc/sec: 422.37
//
Query:       MMETSP1137-20121227|4986_1  [L=492]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (492 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       240  (0.058508); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.19s 00:00:00.55 Elapsed: 00:00:00.44
# Mc/sec: 1475.88
//
Query:       MMETSP1137-20121227|4988_1  [L=192]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (192 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       107  (0.0260848); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.11s 00:00:00.31 Elapsed: 00:00:00.31
# Mc/sec: 817.48
//
Query:       MMETSP1137-20121227|4989_1  [L=477]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (477 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        70  (0.0170648); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.18s 00:00:00.49 Elapsed: 00:00:00.36
# Mc/sec: 1748.86
//
Query:       MMETSP1137-20121227|4991_1  [L=131]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (131 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       129  (0.0314481); expected 82.0 (0.02)
Passed bias filter:                      119  (0.0290102); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.14s 00:00:00.29 Elapsed: 00:00:00.35
# Mc/sec: 494.02
//
Query:       MMETSP1137-20121227|4992_1  [L=445]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.2e-09   36.0   0.0    3.4e-08   31.2   0.0    2.1  2  TIGR02410 carnitine_TMLD: trimethyllysine dioxygenase
    3.8e-05   20.7   0.0    0.00018   18.5   0.0    1.9  2  TIGR02409 carnitine_bodg: gamma-butyrobetaine hydroxylase
    0.00021   18.3   0.0    0.00042   17.3   0.0    1.4  1  TIGR03946 viomycin_VioC: arginine beta-hydroxylase, Fe(II)/alpha-ketoglutarate-dependent


Domain annotation for each model (and alignments):
>> TIGR02410  carnitine_TMLD: trimethyllysine dioxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.0     0.013        18     173     241 ..     192     257 ..     177     286 .. 0.80
   2 !   31.2   0.0   2.5e-11   3.4e-08     309     341 ..     378     410 ..     368     424 .. 0.88

  Alignments for each domain:
  == domain 1    score: 2.5 bits;  conditional E-value: 0.013
   TIGR02410 173 AYtsleissHtDgtYfeetpGlqlFHlLkhdg.tGGetvlvDvfkvaeklkkkapedfelLtkvkieahs 241
                 A ++  i+ H ++t f++t+    F + k++   GGe  + D+  +   ++ + pe + +L++ k++   
  MMETSP1137-20121227|4992_1 192 ALSKHYIGLHNEST-FKKTAKSGAFVCFKPATvSGGEFLIADGEAI---FRXLDPEILXMLCERKVRISV 257
                 55667788888877.678888889******9989********9876...677789999999999887654 PP

  == domain 2    score: 31.2 bits;  conditional E-value: 2.5e-11
   TIGR02410 309 penevevklkpGevlifDnwRvlHaRtsFtGkR 341
                 + n v+v ++pG+vl+ Dn+RvlH+R+ F+G+R
  MMETSP1137-20121227|4992_1 378 EANIVRVPMQPGDVLLCDNYRVLHGRDIFEGER 410
                 46899**************************99 PP

>> TIGR02409  carnitine_bodg: gamma-butyrobetaine hydroxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0     0.088   1.2e+02     210     248 ..     221     256 ..     192     294 .. 0.83
   2 !   18.5   0.0   1.3e-07   0.00018     312     340 ..     380     408 ..     369     417 .. 0.83

  Alignments for each domain:
  == domain 1    score: -0.7 bits;  conditional E-value: 0.088
   TIGR02409 210 stveGGdsllvDGFavaeaLrkekpeafkiLsstsvefr 248
                  tv GG+ l+ DG a+   L   +pe+  +L++  v+  
  MMETSP1137-20121227|4992_1 221 ATVSGGEFLIADGEAIFRXL---DPEILXMLCERKVRIS 256
                 57899********9987666...7899999999888765 PP

  == domain 2    score: 18.5 bits;  conditional E-value: 1.3e-07
   TIGR02409 312 lkltfkleeGdlvlfdntRllHaRdafea 340
                 + +   +++Gd++l dn R+lH+Rd fe 
  MMETSP1137-20121227|4992_1 380 NIVRVPMQPGDVLLCDNYRVLHGRDIFEG 408
                 567778*********************93 PP

>> TIGR03946  viomycin_VioC: arginine beta-hydroxylase, Fe(II)/alpha-ketoglutarate-dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.0   3.1e-07   0.00042     262     299 ..     370     407 ..     360     415 .. 0.90

  Alignments for each domain:
  == domain 1    score: 17.3 bits;  conditional E-value: 3.1e-07
   TIGR03946 262 ldaliklidaklrevvldqGdvafidnrravhGrrafr 299
                 l+ + +  +a++  v +++Gdv++ dn+r++hGr  f 
  MMETSP1137-20121227|4992_1 370 LQKVNEVCEANIVRVPMQPGDVLLCDNYRVLHGRDIFE 407
                 677788899*************************9886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (445 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        67  (0.0163335); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.32u 0.15s 00:00:00.47 Elapsed: 00:00:00.49
# Mc/sec: 1198.68
//
Query:       MMETSP1137-20121227|4993_1  [L=489]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (489 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       130  (0.0316919); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.18s 00:00:00.54 Elapsed: 00:00:00.61
# Mc/sec: 1058.08
//
Query:       MMETSP1137-20121227|4994_1  [L=360]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (360 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        97  (0.023647); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.16s 00:00:00.46 Elapsed: 00:00:00.48
# Mc/sec: 989.92
//
Query:       MMETSP1137-20121227|4995_1  [L=463]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   6.2e-159  527.8   0.2   7.3e-159  527.6   0.1    1.0  1  TIGR01421 gluta_reduc_1: glutathione-disulfide reductase
   3.7e-121  402.6   1.0   4.2e-121  402.4   0.7    1.0  1  TIGR01424 gluta_reduc_2: glutathione-disulfide reductase
    1.9e-96  321.6   0.1    2.3e-96  321.4   0.0    1.0  1  TIGR01438 TGR: thioredoxin and glutathione reductase
    1.6e-89  298.5   1.4      2e-89  298.1   1.0    1.0  1  TIGR01423 trypano_reduc: trypanothione-disulfide reductase
    1.2e-79  265.9   0.2    1.5e-79  265.6   0.1    1.0  1  TIGR01350 lipoamide_DH: dihydrolipoyl dehydrogenase
    4.2e-69  231.5   0.2    5.7e-69  231.1   0.1    1.0  1  TIGR02053 MerA: mercuric reductase
    1.4e-62  209.9   0.2    1.8e-62  209.5   0.2    1.0  1  TIGR03452 mycothione_red: mycothione reductase
      3e-24   83.4   0.0    1.1e-22   78.3   0.0    2.0  2  TIGR03385 CoA_CoA_reduc: CoA-disulfide reductase
    5.3e-15   52.8   0.1    8.4e-15   52.2   0.1    1.2  1  TIGR01292 TRX_reduct: thioredoxin-disulfide reductase
    1.4e-13   48.6   0.0    3.5e-11   40.7   0.0    2.1  2  TIGR03169 Nterm_to_SelD: pyridine nucleotide-disulfide oxidoreductase family protein
    2.2e-12   44.0   0.8      3e-12   43.6   0.6    1.3  1  TIGR02374 nitri_red_nirB: nitrite reductase [NAD(P)H], large subunit
      6e-11   39.6   1.1    9.1e-08   29.1   0.8    3.0  1  TIGR01316 gltA: glutamate synthase (NADPH), homotetrameric
      3e-08   30.5   0.2    4.8e-08   29.8   0.2    1.2  1  TIGR03143 AhpF_homolog: putative alkyl hydroperoxide reductase F subunit
    1.2e-07   28.5   0.9    2.1e-07   27.7   0.6    1.3  1  TIGR03140 AhpF: alkyl hydroperoxide reductase, F subunit
    3.5e-07   27.3   0.0    5.8e-07   26.5   0.0    1.3  1  TIGR01317 GOGAT_sm_gam: glutamate synthase, NADH/NADPH, small subunit
    1.3e-06   25.1   0.0    3.4e-06   23.7   0.0    1.6  2  TIGR01318 gltD_gamma_fam: glutamate synthase, small subunit


Domain annotation for each model (and alignments):
>> TIGR01421  gluta_reduc_1: glutathione-disulfide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  527.6   0.1  2.8e-161  7.3e-159      35     449 ..      25     441 ..       2     442 .. 0.97

  Alignments for each domain:
  == domain 1    score: 527.6 bits;  conditional E-value: 2.8e-161
   TIGR01421  35 klGGtcvnvGcvPkkvmwyaaslaelledaadyGfksekenkfnfkelkekrdayvdrlngiyqknlekekvelieGyaeftkdetvevngkeytakhiliatGgkpsipeniPGaelgldsdgffaleelPkrvvivGaGyiavelaGvlhglGsktdlvirrervlr.sfdelisekvveelekaglevhklskvvkvektvegklvitledgkeiedvdeliwaiGrkpntkdlglekvgvkldekgyikvdeyqntnvegiyalGdv.vGkveltPvaiaaGrklserlfegkedakldyenvPtvvfshPeigtvGltekeaiekyGkenvkvykssftamyyaltk..ekqksrlklvcagkeekvvGlhiiGlgvdellqGfavaikmGatkadfdntvaihPtsseelvtl 449
                   GGtcvnvGcvPkk+m+ aa ++e+ e a +y +++ +  k+++++l+ekr ayv+rl giy+ nl+k  v ++eG+a+ft+ +tv vng++++a+h+lia Gg+p ++  +PGae+ ++sdgff l+e+Pk+  +vGaGyiavelaG+l++lG++t+l+ r+e vlr +fd +i++ +  e++++g+++ ++s+vv v k ++g l  +l +g ++   d++++aiGr p t ++gle +gv+ d+kg i vd+ qnt v+g+y+lGd  +   eltPvaiaaGr+l++r+f+g + akl+y n+ tvvfshP+ig +Glte +a e yG   v vy+s+f++m+yal +   k++  +klvc+g+e++vvGlhiiG+++de+lqGfava+kmGatkadfdn+vaihPt+seelvt+
  MMETSP1137-20121227|4995_1  25 GYGGTCVNVGCVPKKLMFTAAAHVETAETAPGYEIDMGHP-KLDWRKLVEKRTAYVQRLIGIYKSNLDKAGVTRVEGFASFTGPKTVTVNGRTLSADHVLIAVGGQPDKL-TMPGAEYCINSDGFFDLKEQPKSALVVGAGYIAVELAGILNALGTRTSLACRGEGVLRhGFDPMIQKVINAEIVRSGVNLITKSQVVAVSKGADGSLSAKLSNGDTVGGLDCVLMAIGRTPMTMNMGLETTGVSFDKKGRIVVDDKQNTGVDGLYCLGDCsISGYELTPVAIAAGRRLADRIFGGADSAKLEYANIATVVFSHPPIGVIGLTEPKAREVYGDAAVSVYSSQFSPMHYALCEpdAKKPMAMKLVCVGDEQRVVGLHIIGISADEMLQGFAVAMKMGATKADFDNAVAIHPTASEELVTM 441
                 57**********************************9954.6********************************************************************.9********************************************************955***************************************************************************************************747889*************************************************************************9863368999***********************************************************9 PP

>> TIGR01424  gluta_reduc_2: glutathione-disulfide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  402.4   0.7  1.6e-123  4.2e-121      24     445 ..       2     441 ..       1     442 [. 0.95

  Alignments for each domain:
  == domain 1    score: 402.4 bits;  conditional E-value: 1.6e-123
   TIGR01424  24 lGakvaiaeedl............vGGtcvirGcvPkkllvyasefaeeledakgyGwevekaefdwkkllakkdkeiarlsglykkllakagvellegraelvdantvevledgktytaekiliavGgrpvkpelPGaelaitsdeafdletlPksilvvGgGyiavefagifrGlGvkvtllyrgekilr.gfdddvraelaeeleerGirillktvlksiekvddG.lkvtlskdeeiv.advvllatGrvPnvkglgleaaGvelndagaiavdeysrtsvpsiyavGdvt.drinltPvaikeaaafaetefkn.nptkadhdlvatavfsqPevatvGlseeearekftdd.ievyraefrPmkatlsG..rqekillklvvdekddkvlGahvvGedaaeiiqlvaialkaGatkkdfdstvavhPssaeelvtm 445
                 +G++vai+e++             +GGtcv  GcvPkkl+  a+ + e+ e+a gy  ++++ ++dw+kl++k++  ++rl g+yk++l+kagv  +eg a   +++tv v+  g+t++a+++liavGg+p k ++PGae++i sd  fdl+++Pks+lvvG+Gyiave+agi++ lG++++l  rge +lr gfd  +++ +++e+ + G+++++k+ + +++k +dG l + ls+++++   d vl+a+Gr+P + ++gle++Gv+ +++g i+vd+  +t v+++y +Gd +    +ltPvai  ++ +a+  f++ +  k ++ ++at vfs+P+++++Gl+e  are ++d  ++vy ++f Pm+ +l     +  + +klv   ++++v+G h++G  a e++q+ a+a+k+Gatk+dfd++va+hP+++eelvtm
  MMETSP1137-20121227|4995_1   2 YGKRVAIVEREAvwdkdgvrhgagYGGTCVNVGCVPKKLMFTAAAHVETAETAPGYEIDMGHPKLDWRKLVEKRTAYVQRLIGIYKSNLDKAGVTRVEGFASFTGPKTVTVN--GRTLSADHVLIAVGGQPDKLTMPGAEYCINSDGFFDLKEQPKSALVVGAGYIAVELAGILNALGTRTSLACRGEGVLRhGFDPMIQKVINAEIVRSGVNLITKSQVVAVSKGADGsLSAKLSNGDTVGgLDCVLMAIGRTPMTMNMGLETTGVSFDKKGRIVVDDKQNTGVDGLYCLGDCSiSGYELTPVAIAAGRRLADRIFGGaDSAKLEYANIATVVFSHPPIGVIGLTEPKAREVYGDAaVSVYSSQFSPMHYALCEpdAKKPMAMKLVCVGDEQRVVGLHIIGISADEMLQGFAVAMKMGATKADFDNAVAIHPTASEELVTM 441
                 89*******99999***********************************************************************************************996..5****************************************************************************768***********************************888888988888625*************************************************863789******************98357899*****************************8753789***********98621445578**********************************************************9 PP

>> TIGR01438  TGR: thioredoxin and glutathione reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  321.4   0.0   9.1e-99   2.3e-96      40     468 ..      21     441 ..       1     452 [. 0.91

  Alignments for each domain:
  == domain 1    score: 321.4 bits;  conditional E-value: 9.1e-99
   TIGR01438  40 GtkwGiGGtcvnvGcipkklmhqaallGkalkdskkyGwnveeqvkhdweklskavqdrikslnfsyrvalrekkvkyinayaelvdkdvikatdkkkkeeilsakrvliatGlrpkypddieGakelsitsddlfslkkvpGktlvvGasyvalecaGflaalgldvtvlvrs..illrGfdqdcavkvkeylkeqGvkfkeqvlpkkvekvea.kvlvkftdkdntieeeydtvlyaiGrkadlkklnlenvgvkvnkksgkiladelertnvpsiyavGdivedkleltpvaikaGklladrlfkdsk.eivdyenvpttvftpleygavGlseekavekyGeenvevfhseftpleysvpsrkdsskcyakvvclkdedervvGlhfvGpnagevtqGfavalrvgvkkkdldntigihpvsaeefvkl 468
                  +  G GGtcvnvGc+pkklm  aa   ++   +  y  ++ +  k dw+kl+++    ++ l  +y+ +l +  v+ ++++a + ++++++        ++lsa++vlia G +p  +  ++Ga e++i sd +f lk++p  +lvvGa+y+a+e aG l+alg    ++ r   +l +Gfd  + + ++  +   Gv+++ + ++  v k  +    +k ++ d  +++  d vl+aiGr++ + +++le+ gv  +kk g+i++d+ ++t v+++y +Gd      eltpvai aG+ ladr+f++++  +++y n++t vf+   +g +Gl+e ka e yG+ +v v+ s+f p+ y++ + + ++   +k+vc  d ++rvvGlh++G  a e++qGfava+++g +k d+dn+++ihp+++ee+v++
  MMETSP1137-20121227|4995_1  21 RHGAGYGGTCVNVGCVPKKLMFTAAAHVETAETAPGYEIDMGH-PKLDWRKLVEKRTAYVQRLIGIYKSNLDKAGVTRVEGFASFTGPKTVTVN-----GRTLSADHVLIAVGGQPDKL-TMPGA-EYCINSDGFFDLKEQPKSALVVGAGYIAVELAGILNALGTRTSLACRGegVLRHGFDPMIQKVINAEIVRSGVNLITKSQVVAVSKGADgSLSAKLSNGD--TVGGLDCVLMAIGRTPMTMNMGLETTGVSFDKK-GRIVVDDKQNTGVDGLYCLGDCSISGYELTPVAIAAGRRLADRIFGGADsAKLEYANIATVVFSHPPIGVIGLTEPKAREVYGDAAVSVYSSQFSPMHYALCEPDAKKPMAMKLVCVGD-EQRVVGLHIIGISADEMLQGFAVAMKMGATKADFDNAVAIHPTASEELVTM 441
                 2345789****************99999999999989888877.8*********************************************9975.....468*****************.5****.*********************************************995437778***********************99999999866626677777544..78889*************************986.89*******************************************99873589*****************************************************99999*****975.68*********************************************9986 PP

>> TIGR01423  trypano_reduc: trypanothione-disulfide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  298.1   1.0   7.9e-92     2e-89      25     471 ..       1     442 [.       1     447 [. 0.93

  Alignments for each domain:
  == domain 1    score: 298.1 bits;  conditional E-value: 7.9e-92
   TIGR01423  25 lykkrvavvd...lqkvhgppfyaalggtcvnvgcvpkklmvtgaqymdtlresagfgweldaesvkanwkaliaaknkavldindsyedmfkdteglefflgfgaledknvvlvresadpkskvkerldaeyillatgswpqmlkiegielcissneafyleeapkrvltvgggyisvefagifnaykavggkvdlayrndmilr.gfdselrkeltkqlvangidvrtnenpakveknadgskhvvfesgkel.dvdvvmlaigrlprsqtlqldkvgveladkgaikvdeysktnvdniyaigdvt.drvmltpvainegaavvdtvfas.kprktdhtkvasavfsippigvcglveeeaakkyek..vavyessftplmhnisgskykkfvv.kivtdhadgevlgvhllgdsspeiiqavaiclklnakisdfyntigvhptsaeelcsmr 471
                 +y krva+v+   +  + g  + a  ggtcvnvgcvpkklm t a +++t   +   g+e+d    k +w+ l+  + + v  +   y+  + d  g++   gf ++   ++v+v            +l a+++l+a g  p++l ++g e+ci+s+  f l+e pk +l+vg gyi+ve+agi+na    g + +la r++ +lr gfd  ++k +  ++v  g+++ t+ +   v+k adgs    +  g ++  +d v++aigr p +  + l+++gv   +kg i vd+  +t vd +y++gd +     ltpvai  g  + d +f+     k +++++a+ vfs ppigv gl+e +a   y +  v+vy s f+p+ + +     kk ++ k+v    +  v+g+h++g s+ e++q  a+++k++a  +df n++ +hpt++eel++m 
  MMETSP1137-20121227|4995_1   1 MYGKRVAIVEreaVWDKDGVRHGAGYGGTCVNVGCVPKKLMFTAAAHVETAETA--PGYEIDMGHPKLDWRKLVEKRTAYVQRLIGIYKSNL-DKAGVTRVEGFASFTGPKTVTVNG---------RTLSADHVLIAVGGQPDKLTMPGAEYCINSDGFFDLKEQPKSALVVGAGYIAVELAGILNA---LGTRTSLACRGEGVLRhGFDPMIQKVINAEIVRSGVNLITKSQVVAVSKGADGSLSAKLSNGDTVgGLDCVLMAIGRTPMTMNMGLETTGVSFDKKGRIVVDDKQNTGVDGLYCLGDCSiSGYELTPVAIAAGRRLADRIFGGaDSAKLEYANIATVVFSHPPIGVIGLTEPKAREVYGDaaVSVYSSQFSPMHYALCEPDAKKPMAmKLVCVGDEQRVVGLHIIGISADEMLQGFAVAMKMGATKADFDNAVAIHPTASEELVTMA 442
                 588******83334556899****************************997554..4789***********************999999875.889******************974.........589*********************************************************8...588999********9889********************************************998359*************************************************8636689*****************86156789*****************************7523778**************9999988636777777789**********************************************995 PP

>> TIGR01350  lipoamide_DH: dihydrolipoyl dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  265.6   0.1     6e-82   1.5e-79      34     448 ..      25     439 ..       3     450 .. 0.91

  Alignments for each domain:
  == domain 1    score: 265.6 bits;  conditional E-value: 6e-82
   TIGR01350  34 klGGtClnvGCiPtKalLksaevveelkeakelgievenvkldlekllerkekvvkklvgGvkaLlkknkvevikGeaklldkkevevkkekkekkleakniiiAtGseprelplkleedekvvitseealelkevpeslvivGgGviGvEfasifaklGvkvtvielldrilp.aldaevskvlkkklkkkgvkiltnakvtevekeedevv.veakkkevetleaekvLvavGrkpnleelgleklgveldergaikvdeelrtnvpgiyaiGDv.igklmLAhvAskegvvaaekiagkeks.eidykavPsviytePevasvGlteeqakeeg..ievkvgkfpfaangkalalee..tdGfvkvivdkktgeilGahivgaeaseliselalaveleltveelaktihpHPtlsEaik 448
                  +GGtC+nvGC+P K + ++a  ve++++a  + i++ + kld++kl+e++++ v++l g  k  l+k++v+ ++G a+++++k+v+v++++    l+a++++iA G +p +l++      ++ i+s++ + lke+p+s ++vG+G+i vE+a i++ lG+  ++    + +l   +d  + kv++ ++ ++gv+++t+++v +v+k +d    ++ +++  ++   + vL+a+Gr+p + ++gle++gv++d++g+i+vd++ +t v+g+y  GD+ i++  L  vA + g   a++i+g ++s +++y  + +v++++P + ++Glte +a+e +   +v v + +f+ +  al   +  +   +k+++  + ++++G+hi+g +a e+++ +a+a+++++t  +  +++  HPt sE + 
  MMETSP1137-20121227|4995_1  25 GYGGTCVNVGCVPKKLMFTAAAHVETAETAPGYEIDMGHPKLDWRKLVEKRTAYVQRLIGIYKSNLDKAGVTRVEGFASFTGPKTVTVNGRT----LSADHVLIAVGGQPDKLTM---PGAEYCINSDGFFDLKEQPKSALVVGAGYIAVELAGILNALGTRTSLACRGEGVLRhGFDPMIQKVINAEIVRSGVNLITKSQVVAVSKGADGSLsAKLSNG-DTVGGLDCVLMAIGRTPMTMNMGLETTGVSFDKKGRIVVDDKQNTGVDGLYCLGDCsISGYELTPVAIAAGRRLADRIFGGADSaKLEYANIATVVFSHPPIGVIGLTEPKAREVYgdAAVSVYSSQFSPMHYALCEPDakKPMAMKLVCVGDEQRVVGLHIIGISADEMLQGFAVAMKMGATKADFDNAVAIHPTASEELV 439
                 58*********************************************************999***************************997....88****************9...566689*****************************************999999996279**************************99998877662555555.477789*************************************************95699*******************877777*****************************98334455566677777777765542166789****************************************************9875 PP

>> TIGR02053  MerA: mercuric reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  231.1   0.1   2.2e-71   5.7e-69      34     446 ..      26     438 ..      16     444 .. 0.90

  Alignments for each domain:
  == domain 1    score: 231.1 bits;  conditional E-value: 2.2e-71
   TIGR02053  34 lGGtCvnvGCvPSKallraaevaklakkas.vgllaaevevdleelleqkkevveelRkeKYedvlesydavdllegkakfkdektvkvdlgkevvgakrvliAtGarpavPeipGLkeaeyltseelleldkipeslvviGggaiavElaqlfarlGsevtllqrserllke.eepeisaaveellaeeGvevvksakvkavskrnggkklvtvekndskkeveadellvAtGRkpnvdgLnLekvgvklderGeilvdeklrtsnpkiyAAGDv.ikglqlesvAakeGvvaAenalggae.akldlevlPkvvFtdPevAsvGlteeelakagievesrtvkleavpralinre..tr..GliKlvaeketkkvlgvqvvaeeAaevineaalaikagltvddlidtlhvfltmaEgl 446
                  GGtCvnvGCvP K + +aa   ++a+ a+ +++   ++++d ++l+e++   v+ l    Y++ l++  +v  +eg a f+++ktv v+ g+++ +++ vliA+G +p +  +pG +    ++s+ +++l++ p+s +v+G+g+iavEla +++ lG ++ l+ r e +l +  +p i ++++  + + Gv+++++++v avsk+ +g   +++ +  +++    d +l+A GR+p +  ++Le++gv +d++G i+vd+k +t   ++y  GD+ i+g +l  vA ++G   A+ ++gga+ akl++  + +vvF +P +  +Glte ++ +   + ++++ + +  p  +++ e   +    +Klv   + ++v+g ++++ +A+e+++ +a+a+k+g+t  d  + +++++t +E l
  MMETSP1137-20121227|4995_1  26 YGGTCVNVGCVPKKLMFTAAAHVETAETAPgYEIDMGHPKLDWRKLVEKRTAYVQRLI-GIYKSNLDKA-GVTRVEGFASFTGPKTVTVN-GRTLSADH-VLIAVGGQPDKLTMPGAE--YCINSDGFFDLKEQPKSALVVGAGYIAVELAGILNALGTRTSLACRGEGVLRHgFDPMIQKVINAEIVRSGVNLITKSQVVAVSKGADGSLSAKLSN--GDTVGGLDCVLMAIGRTPMTMNMGLETTGVSFDKKGRIVVDDKQNTGVDGLYCLGDCsISGYELTPVAIAAGRRLADRIFGGADsAKLEYANIATVVFSHPPIGVIGLTEPKAREVYGDAAVSVYSSQFSPMHYALCEpdAKkpMAMKLVCVGDEQRVVGLHIIGISADEMLQGFAVAMKMGATKADFDNAVAIHPTASEEL 438
                 6****************99999999988888***********************9996.68********.5*******************.88776665.****************65..36899******************************************99887637******************************987877666666..566667899************************************************5677********************986479**************************9987777777666555555555443113311469****************************************************987 PP

>> TIGR03452  mycothione_red: mycothione reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  209.5   0.2   6.9e-65   1.8e-62      32     443 ..      24     436 ..       3     444 .. 0.88

  Alignments for each domain:
  == domain 1    score: 209.5 bits;  conditional E-value: 6.9e-65
   TIGR03452  32 GtfGGtclnvGciptkmfvyaaevakevkesarlgidaeidsvrwpdivsrvfedridpiaasGeeyrrgdktpnidvyesharfvgrktlrtedgeeitadqvviaaGsrpvipeaiaesgvryytn.edimrlpelpeslvivGgGyialefahvfsalGtkvtlvarsekllrkldediserft..elakkkfdvrlgrnvtaaeqdddg.vtlelddGstvea.dvllvatGrvpngdlldaeaaGvevdedgrvkvdeyqrtsaegvfalGdvs.spyqlkhvanaearvvkhnllkdedlkkadhdfvpaavftdpqiatvGlteqeareaGlditvkv..qdygdvayGwamedteg..lakliadkdtGkllGahiiGaqassliqqlitalafgldarelarkqywihpalpe 443
                   +GGtc+nvGc+p k+   aa   ++ +++  + id    +++w ++v++        + +    y+ + +   ++  e  a+f+g+kt+++ +g +++ad+v+ia G++   p+ ++  g++y  n +    l+e+p+s ++vG+Gyia+e+a +++alGt+ +l  r+e +lr+  + + +++   e+ +  +++ ++++v+a+++ +dg ++ +l +G+tv + d +l+a+Gr+p + ++ +e++Gv  d++gr+ vd+ q t ++g++ lGd s s y+l  va a  r +++ +   +d  k ++ ++ + vf++p i+++Glte +are   d +v v   +++ + y     d ++   +kl++  d  +++G hiiG  a  ++q +  a+ +g + +++ +    ihp+ +e
  MMETSP1137-20121227|4995_1  24 AGYGGTCVNVGCVPKKLMFTAAAHVETAETAPGYEIDMGHPKLDWRKLVEKR----TAYVQRLIGIYKSNLDKAGVTRVEGFASFTGPKTVTV-NGRTLSADHVLIAVGGQ---PDKLTMPGAEYCINsDGFFDLKEQPKSALVVGAGYIAVELAGILNALGTRTSLACRGEGVLRHGFDPMIQKVInaEIVRSGVNLITKSQVVAVSKGADGsLSAKLSNGDTVGGlDCVLMAIGRTPMTMNMGLETTGVSFDKKGRIVVDDKQNTGVDGLYCLGDCSiSGYELTPVAIAAGRRLADRIFGGADSAKLEYANIATVVFSHPPIGVIGLTEPKAREVYGDAAVSVysSQFSPMHYALCEPDAKKpmAMKLVCVGDEQRVVGLHIIGISADEMLQGFAVAMKMGATKADFDN-AVAIHPTASE 436
                 459*************88888888899999***************9999764....44555556678888888899999***********977.699*************8...5899999****98725589********************************************87766666541367888899999**********99999**********9879************************************************98689******************************************************87666555522689999999999887643268*************************************999976.5679997654 PP

>> TIGR03385  CoA_CoA_reduc: CoA-disulfide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.0     0.021       5.3     216     263 ..     103     148 ..      85     153 .. 0.79
   2 !   78.3   0.0   4.2e-25   1.1e-22     146     418 ..     151     425 ..     148     441 .. 0.82

  Alignments for each domain:
  == domain 1    score: 3.5 bits;  conditional E-value: 0.021
   TIGR03385 216 svegeekvevltsgkvyqaDlvilavGvkPnselikssqlklgkkGai 263
                 s  g ++  v  +g++ +aD v++avG +P+   +  ++  +++ G+ 
  MMETSP1137-20121227|4995_1 103 SFTGPKT--VTVNGRTLSADHVLIAVGGQPDKLTMPGAEYCINSDGFF 148
                 5555566..467999****************98888888888888875 PP

  == domain 2    score: 78.3 bits;  conditional E-value: 4.2e-25
   TIGR03385 146 kkkvekvvviGgGyiglemvealkergkevtliersekilnkllDeeiakiveeelekkeielrlneevksveg..eekve.vltsgkvy.qaDlvilavGvkPnsel..ikssqlklgkkGaikvnekfqtsveniyaiGDvaesknivtkkeelvPlAwaanklgsivaeniaGk.diefkGvlGtsivkfldltiaktGltenelkklnidyktvevkakakanYY....P.gakdlllklivekdtkkilgaqavGkegvlkRidvlaaaikakltvkdlt 418
                 k++ ++++v+G+Gyi++e++  l++ g    l  r+e +l++ +D  i+k+++ e+ + +++l ++ +v++v    ++     l +g++    D v++a+G  P +    ++ +++  +kkG i+v++k +t v+ +y +GD+  s +       l P+A aa +    +a++i G  d++   +   + v f    i+ +Glte +++ +  d  +    ++  + +Y    P  +k++ +kl+   d ++++g  ++G   +++ ++  a+a+k ++t  d  
  MMETSP1137-20121227|4995_1 151 KEQPKSALVVGAGYIAVELAGILNALGTRTSLACRGEGVLRHGFDPMIQKVINAEIVRSGVNLITKSQVVAVSKgaDGSLSaKLSNGDTVgGLDCVLMAIGRTPMTMNmgLETTGVSFDKKGRIVVDDKQNTGVDGLYCLGDCSISGYE------LTPVAIAAGR---RLADRIFGGaDSAKLEYANIATVVFSHPPIGVIGLTEPKAREVYGDAAVSVYSSQFSPMHYalcePdAKKPMAMKLVCVGDEQRVVGLHIIGIS-ADEMLQGFAVAMKMGATKADFD 425
                 578999******************************************************************752233344588888765279***********7643236888*****************************988775......4588888755...57787777647766666666777777889***********9655555444444444555553555624689*********************99.*****************99864 PP

>> TIGR01292  TRX_reduct: thioredoxin-disulfide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.2   0.1   3.3e-17   8.4e-15      88     290 ..     107     309 ..      84     315 .. 0.79

  Alignments for each domain:
  == domain 1    score: 52.2 bits;  conditional E-value: 3.3e-17
   TIGR01292  88 pfkvltedekeykakaviiAtGakarklgikgeeeflgrGvsyCavCDgal.fknk..evavvGggdsAveealyLskiakkVtlvhrrdkl.r.aekillerlkkne....kievllnstveeik.GdekvesvkikntktkeeeelkvdgvFiaiGhepntellkel...leldeegyivvdeemrTsveGvfaaGDvrdkslrQvvtaagdGa 290
                 p++v++ ++++ +a+ v+iA+G ++ kl ++        G  yC   Dg++  k++  + +vvG g  Ave a  L+ ++++  l  r + + r   + +++++ ++e     ++++++s+v +++ G +   s k++    + ++   +d+v +aiG +p t  +  +   ++ d++g ivvd++++T v+G++  GD++ + ++   +a++ G 
  MMETSP1137-20121227|4995_1 107 PKTVTV-NGRTLSADHVLIAVGGQPDKLTMP--------GAEYCINSDGFFdLKEQpkSALVVGAGYIAVELAGILNALGTRTSLACRGEGVlRhGFDPMIQKVINAEivrsGVNLITKSQVVAVSkGADGSLSAKLS----NGDTVGGLDCVLMAIGRTPMTMNMGLEttgVSFDKKGRIVVDDKQNTGVDGLYCLGDCSISGYELTPVAIAAGR 309
                 445554.579*****************9999........7789******98545543389****************************98762423345777777766444478888888888775144454455555....55667789***********98765433358*******************************9999999999885 PP

>> TIGR03169  Nterm_to_SelD: pyridine nucleotide-disulfide oxidoreductase family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.5   0.0    0.0033      0.86     188     261 ..      74     149 ..      40     153 .. 0.74
   2 !   40.7   0.0   1.4e-13   3.5e-11     142     282 ..     151     295 ..     147     310 .. 0.86

  Alignments for each domain:
  == domain 1    score: 6.5 bits;  conditional E-value: 0.0033
   TIGR03169 188 alsakvrklv...krllakrgievlekeevtevedealllaegetleadavllatgakapaw.LaesglsldedGfla 261
                 ++ a v++l+   k +l+k+g++ +e  +   ++  ++++ +g+tl+ad+vl+a g ++ ++ +   +  +++dGf+ 
  MMETSP1137-20121227|4995_1  74 KRTAYVQRLIgiyKSNLDKAGVTRVEGFASFTGP--KTVTVNGRTLSADHVLIAVGGQPDKLtMPGAEYCINSDGFFD 149
                 5555555543222778999999999999888888..555559****************99873445666677777765 PP

  == domain 2    score: 40.7 bits;  conditional E-value: 1.4e-13
   TIGR03169 142 seetkslavvGgGaagvElalalrkrlkkrglkaevslaseakllqalsakvrklvkrllakrgievlekeevtevede.....alllaegetl.eadavllatgakapaw...LaesglsldedGflavkktLqslshpevFaaGDcav 282
                 +e++ks +vvG+G  +vEla+ l+ + ++++l+       e+ l +++ + ++k +++ + ++g+++++k++v  v+++     + +l++g+t+   d vl+a+g  + ++   L+++g+s d++G++ v+++   ++ + ++  GDc  
  MMETSP1137-20121227|4995_1 151 KEQPKSALVVGAGYIAVELAGILNALGTRTSLA----CRGEGVLRHGFDPMIQKVINAEIVRSGVNLITKSQVVAVSKGadgslSAKLSNGDTVgGLDCVLMAIGRTPMTMnmgLETTGVSFDKKGRIVVDDKQ-NTGVDGLYCLGDCSI 295
                 6788999**************999998888887....4456666678999************************99998999997777788777369**********9987777****************9985.5599*********74 PP

>> TIGR02374  nitri_red_nirB: nitrite reductase [NAD(P)H], large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.6   0.6   1.2e-14     3e-12      88     306 ..     110     319 ..     105     411 .. 0.85

  Alignments for each domain:
  == domain 1    score: 43.6 bits;  conditional E-value: 1.2e-14
   TIGR02374  88 itdagrtlsyDkLilatGsypfilPipGaDkkgvfvyrtieDldaleaaakrtkkaaviGgGLLGLeaaraLknlGldvsvielapllmakqlDqtagrlLqrelekkGltvlleketveivkesvekaerlrfkDGssle.adlvvlaaGirPrd.eLaa.eaGlkvndrrGiivndsmqtsdPdiyavGecaehngrvyGLvaPlyeqakvladhllgve 306
                 +t  grtls D++++a G  p  l +pGa+   +       + d +    ++ k a v+G+G + +e a  L+ lG  +s       ++++ +D +  + ++ e+ + G+++ ++ + v ++k   +   + ++++G+++   d v++a+G  P + +++  ++G++ ++++ i+v+d  +t    +y +G+c+      y L       ++ lad++ g+ 
  MMETSP1137-20121227|4995_1 110 VTVNGRTLSADHVLIAVGGQPDKLTMPGAEY--CI------NSDGFFDLKEQPKSALVVGAGYIAVELAGILNALGTRTSLACRGEGVLRHGFDPMIQKVINAEIVRSGVNLITKSQVVAVSKGA-DGSLSAKLSNGDTVGgLDCVLMAIGRTPMTmNMGLeTTGVSFDKKGRIVVDDKQNTGVDGLYCLGDCSI-S--GYELTPVAIAAGRRLADRIFGGA 319
                 6778999999999999999999999999874..43......3455666678999*********************************************************99999998888766.77778899999998537***********7635665157*****************************64.3..46776666778888888888765 PP

>> TIGR01316  gltA: glutamate synthase (NADPH), homotetrameric
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.1   0.8   3.6e-10   9.1e-08     273     445 ..     155     315 ..      89     317 .. 0.79

  Alignments for each domain:
  == domain 1    score: 29.1 bits;  conditional E-value: 3.6e-10
   TIGR01316 273 kkvvviGgGntavdaartalrlGaevhvvyrrtredmtareeeikhaeeeGvkfefllqpveviGdeeGevkavkfektelqeerdsgekrkvpvtdeevkleadavivaiGqeankii..aedsslktskrGtivvdedletsieGvfaGGdv.irGeatvilalgdGkraakai 445
                 k+ +v+G+G++av+ a   + lG+ + ++ r         +  ++ + ++ ++ e +   v++i   + +v+av           d     k+  +d+      d+v++aiG+ +  +    e++++   k+G ivvd++++t ++G++  Gd  i G +   +a++ G+r a  i
  MMETSP1137-20121227|4995_1 155 KSALVVGAGYIAVELAGILNALGTRTSLACRGE----GVLRHGFDPMIQKVINAEIVRSGVNLIT--KSQVVAVSKG-------ADGSLSAKLSNGDTVG--GLDCVLMAIGRTPMTMNmgLETTGVSFDKKGRIVVDDKQNTGVDGLYCLGDCsISGYELTPVAIAAGRRLADRI 315
                 667777777777777777777777777766533....3344556666666666777777777775..4456665433.......4444455555555544..5588*******987654126999*************************999659999999*********99876 PP

>> TIGR03143  AhpF_homolog: putative alkyl hydroperoxide reductase F subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.8   0.2   1.9e-10   4.8e-08      92     285 ..     108     296 ..      88     314 .. 0.83

  Alignments for each domain:
  == domain 1    score: 29.8 bits;  conditional E-value: 1.9e-10
   TIGR03143  92 ktvktakgdlkalavliatGasprklGfeGeeeftGrGvaycatcdGeff...tGldvlviGgGfaaaeeavfltkyakkvtvivrepdftcakaiaekvkanPkievkfnvelkevtGddvlreakfvnnatGeeteykakkdeg.tfG....vfvfvGyvPsself...kgkvelderGyvvtnedletnveGvyaaGdlrvk 285
                 ktv  +  +l a  vlia G  p kl ++G          yc   dG f    + +  lv+G+G+ a e a  l   + + ++  r+++         +   +P i+   n e+   +G + ++++++v    G   + +ak  +g t G    v++ +G +P +  +      v +d++G +v +++ +t v+G+y  Gd  + 
  MMETSP1137-20121227|4995_1 108 KTVTVNGRTLSADHVLIAVGGQPDKLTMPGA--------EYCINSDGFFDlkeQPKSALVVGAGYIAVELAGILNALGTRTSLACRGEGVL-------RHGFDPMIQKVINAEIVR-SGVNLITKSQVVAVSKGADGSLSAKLSNGdTVGgldcVLMAIGRTPMTMNMgleTTGVSFDKKGRIVVDDKQNTGVDGLYCLGDCSIS 296
                 899999999*****************99986........59******66333356789********************9999988887753.......55678**********976.699999***********9999999876542666566688999****997652226779**************************8775 PP

>> TIGR03140  AhpF: alkyl hydroperoxide reductase, F subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.7   0.6   8.1e-10   2.1e-07     298     503 ..     106     310 ..      84     317 .. 0.69

  Alignments for each domain:
  == domain 1    score: 27.7 bits;  conditional E-value: 8.1e-10
   TIGR03140 298 eakevelesGevlkaksvivatGakWrelgvpGekeylgkGvayCphCdGPlf...kgkkvaviGGGnsGieaaidlaGivehvtvlefadelkadkvlve....klkslsnvdil...tsaktkeivgdgdkvtglkykdrsseeekkleldGvfvqiGlvpntefl..kda.velnrrGeividergrtsvkGifaaGdvttvpykqiiiamGeGak 503
                 + k+v++ +G +l+a+ v++a G +  +l +pG          yC   dG +    + k+  v+G G      a++laGi + +       + + + vl +     +++  n +i+   ++  tk+ v   +k    +++ + s+      ld v++ iG  p t  +  + + v  +++G iv+d + +t v+G++  Gd++ + y    +a+ +G +
  MMETSP1137-20121227|4995_1 106 GPKTVTV-NGRTLSADHVLIAVGGQPDKLTMPGA--------EYCINSDGFFDlkeQPKSALVVGAGYI----AVELAGILNALGTRT-SLACRGEGVLRHgfdpMIQKVINAEIVrsgVNLITKSQVVAVSKGADGSLSAKLSNGDTVGGLDCVLMAIGRTPMTMNMglETTgVSFDKKGRIVVDDKQNTGVDGLYCLGDCSISGYELTPVAIAAGRR 310
                 5556665.7999*************999999986........599999996632223577889999986....555677766654322.22344455554311113444555555511133445443333455555667777777778889*********99988654213335********************************9988888877765 PP

>> TIGR01317  GOGAT_sm_gam: glutamate synthase, NADH/NADPH, small subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.5   0.0   2.2e-09   5.8e-07     373     472 ..     216     313 ..     181     317 .. 0.78

  Alignments for each domain:
  == domain 1    score: 26.5 bits;  conditional E-value: 2.2e-09
   TIGR01317 373 avrtvevelkkdedGkyeleevpgseevleadlvllalGfvg.peqallddlgvdkdergnikaeldesetsidGvfaaGdar.rGqslivwaineGreaar 472
                 +  +  v + k  dG     ++++ ++v   d vl+a+G +  ++++ l+ +gv +d++g+i   +d+++t +dG ++ Gd+   G  l   ai+ Gr+ a 
  MMETSP1137-20121227|4995_1 216 K--SQVVAVSKGADGS-LSAKLSNGDTVGGLDCVLMAIGRTPmTMNMGLETTGVSFDKKGRI-VVDDKQNTGVDGLYCLGDCSiSGYELTPVAIAAGRRLAD 313
                 3..3345566778999.6789******************9862566689*************.5567777************84799***********9986 PP

>> TIGR01318  gltD_gamma_fam: glutamate synthase, small subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0       2.1   5.3e+02     378     400 ..     110     132 ..     106     136 .. 0.77
   2 !   23.7   0.0   1.3e-08   3.4e-06     366     461 ..     223     315 ..     174     318 .. 0.73

  Alignments for each domain:
  == domain 1    score: -3.3 bits;  conditional E-value: 2.1
   TIGR01318 378 vaGseavleadvviiafGfepha 400
                 v+     l ad v+ia G +p +
  MMETSP1137-20121227|4995_1 110 VTVNGRTLSADHVLIAVGGQPDK 132
                 555567899********999865 PP

  == domain 2    score: 23.7 bits;  conditional E-value: 1.3e-08
   TIGR01318 366 epdakGrrraeivaGseavleadvviiafGfephamew.laehgikldskGrivaaeeselayqtsnpkifaGGdi.vrGadlvvtavaeGrkaaegi 461
                   +a+G   a+  +G ++v   d v++a G +p++m+  l++ g+  d+kGriv+++    + +t  + ++  Gd+ + G +l   a+a+Gr+ a+ i
  MMETSP1137-20121227|4995_1 223 SKGADGSLSAKLSNG-DTVGGLDCVLMAIGRTPMTMNMgLETTGVSFDKKGRIVVDD----KQNTGVDGLYCLGDCsISGYELTPVAIAAGRRLADRI 315
                 455666666665555.678889*************98659***************94....456788899**9*984689**************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (463 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       123  (0.0299854); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                        23  (0.00560702); expected 4.1 (0.001)
Passed Fwd filter:                        16  (0.00390054); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              16  [number of targets reported over threshold]
# CPU time: 0.61u 0.17s 00:00:00.78 Elapsed: 00:00:00.69
# Mc/sec: 885.67
//
Query:       MMETSP1137-20121227|4996_1  [L=680]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.4e-05   20.0   5.1    0.00011   19.4   3.6    1.1  1  TIGR00599 rad18: DNA repair protein rad18


Domain annotation for each model (and alignments):
>> TIGR00599  rad18: DNA repair protein rad18
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   3.6   2.6e-08   0.00011      29      73 ..     292     336 ..     280     342 .. 0.89

  Alignments for each domain:
  == domain 1    score: 19.4 bits;  conditional E-value: 2.6e-08
   TIGR00599  29 ChvCkdffkaPvltsCsHtFCslCiRrcLseepkCPlCraedqEs 73 
                 C +C++++++     C+H F   C+R++ + +  CP+Cra+  +s
  MMETSP1137-20121227|4996_1 292 CIICREHLETAKKLRCGHLFHFHCLRSWFERQQSCPTCRAQITDS 336
                 ***************************************987665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (680 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       151  (0.0368113); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.17s 00:00:00.65 Elapsed: 00:00:00.45
# Mc/sec: 1994.50
//
Query:       MMETSP1137-20121227|4997_1  [L=329]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.9e-12   43.7   0.0    2.2e-12   43.5   0.0    1.0  1  TIGR03903 TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
    0.00046   17.6   0.0     0.0007   16.9   0.0    1.3  1  TIGR03724 arch_bud32: Kae1-associated kinase Bud32


Domain annotation for each model (and alignments):
>> TIGR03903  TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.5   0.0   1.1e-15   2.2e-12       7     194 ..      40     213 ..      35     273 .. 0.85

  Alignments for each domain:
  == domain 1    score: 43.5 bits;  conditional E-value: 1.1e-15
   TIGR03903   7 aikllRedaaeeerlvaRFrReialCarLshPnivaLlDsGeaedgl.lFavFeyveGrtlrevLaadGaLpaaetgrLmlqvLDalaaahdaGvvhRDLkPqnimvsaadveshakvLDFGigaLlpgvedadeatltrttevlGsPaYaaPeqLRgepvtaksDlYaWGLivleCLtGkrvvqGasv 194
                 a+k+l++ ++   ++v   + e  + ++++hP iv+L+ s   +d++ l+ + ey+ G      L   G  p  +     + +   + + h+  +++RDLkP+n    aa    h kv DFG +     ve+       rt  + G+P+Y aPe +       + D +a G+++ e L G +    +  
  MMETSP1137-20121227|4997_1  40 ALKILKKSEVIYLKQVEHVKTEKLILEEITHPLIVNLMGS--FQDDFnLYLMMEYIIGGEFFSHLRKAGRFPNDTARFYAAEITLVFEHLHSLSILYRDLKPENX---AARPAXHCKVTDFGFAK---RVEH-------RTWTLCGTPEYLAPEIILSKGHGKAVDWWALGILIYEMLAGYPPFYDEDP 213
                 89***********************************955..55554399*********************9876666778888999*****************6...5667899*******863...2333.......555679**********************************9876655555 PP

>> TIGR03724  arch_bud32: Kae1-associated kinase Bud32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.0   3.4e-07    0.0007      68     139 ..      82     161 ..      28     167 .. 0.84

  Alignments for each domain:
  == domain 1    score: 16.9 bits;  conditional E-value: 3.4e-07
   TIGR03724  68 dpeekkivmeyiegkklkdlleekel.......ellkevGelvgklHkagivhgDlttsNiivk.ddklyliDfGLgkks 139
                 d+ +  ++meyi g ++   l++           ++ e+  +  +lH+  i++ Dl ++N   + + ++ + DfG +k+ 
  MMETSP1137-20121227|4997_1  82 DDFNLYLMMEYIIGGEFFSHLRKAGRfpndtarFYAAEITLVFEHLHSLSILYRDLKPENXAARpAXHCKVTDFGFAKRV 161
                 6778899****999888888777666688888778899************************9747778899***99875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (329 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        72  (0.0175524); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.25u 0.21s 00:00:00.46 Elapsed: 00:00:00.30
# Mc/sec: 1447.48
//
Query:       MMETSP1137-20121227|4998_1  [L=630]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (630 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       363  (0.0884934); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.31s 00:00:00.67 Elapsed: 00:00:00.60
# Mc/sec: 1385.89
//
Query:       MMETSP1137-20121227|4999_1  [L=424]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.041   11.6   0.3      0.076   10.7   0.2    1.5  1  TIGR02978 phageshock_pspC: phage shock protein C
      0.046   10.9   0.2      0.072   10.3   0.1    1.2  1  TIGR03729 acc_ester: putative phosphoesterase


Domain annotation for each model (and alignments):
>> TIGR02978  phageshock_pspC: phage shock protein C
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.2   3.7e-05     0.076      70     109 ..     266     308 ..     246     322 .. 0.72

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 3.7e-05
   TIGR02978  70 e...vkkkfwqagetpkealrevkeelrrleerlrevEryvts 109
                 e   + +   +++et+ +alr+v+ +l++ e +l+ vE++ + 
  MMETSP1137-20121227|4999_1 266 ElddDGAAATKDAETRAAALRRVNDKLDEAEAQLKLVEKHFVA 308
                 143356677788899***********************98775 PP

>> TIGR03729  acc_ester: putative phosphoesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.1   3.5e-05     0.072     135     185 ..     268     318 ..     254     330 .. 0.81

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 3.5e-05
   TIGR03729 135 DrrikrplsDkeltalvlkqvkkqlkelskkkvilvtHfvphkefievpad 185
                 D      ++D+e+ a +l++v+++l+e++ +  ++  Hfv+ k+ ++  ++
  MMETSP1137-20121227|4999_1 268 DDDGAAATKDAETRAAALRRVNDKLDEAEAQLKLVEKHFVAFKQSMHWRQQ 318
                 555566789********************9999********9999955444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (424 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       167  (0.0407118); expected 82.0 (0.02)
Passed bias filter:                      106  (0.0258411); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.19u 0.30s 00:00:00.49 Elapsed: 00:00:00.70
# Mc/sec: 799.48
//
Query:       MMETSP1137-20121227|5000_1  [L=426]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (426 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        84  (0.0204778); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.22s 00:00:00.45 Elapsed: 00:00:00.26
# Mc/sec: 2162.59
//
Query:       MMETSP1137-20121227|5001_1  [L=783]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00041   16.0  22.7    0.00057   15.5  15.7    1.0  1  TIGR02168 SMC_prok_B: chromosome segregation protein SMC
  ------ inclusion threshold ------
        8.6    3.3  13.3      0.018   12.1   0.9    2.3  3  TIGR00599 rad18: DNA repair protein rad18


Domain annotation for each model (and alignments):
>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5  15.7   2.8e-07   0.00057     216     363 ..     604     752 ..     596     765 .. 0.91

  Alignments for each domain:
  == domain 1    score: 15.5 bits;  conditional E-value: 2.8e-07
   TIGR02168 216 kelkeelrelelallvlrleelkeeleeleeelkeaeeele.eleaelkeleeeleelrlekseleeeleelqkelqelkaeisrleqeieilkerleqlekeleeleeqleeleskkeeleeelaeleeeleelkeelesleaeleea 363
                 + l+++ +++ +++++l   +l+++++ +ee+lk+a+ +++ +l+++ ++l ++ e l++ k+e+e+e++ + k+  ++ + isr  +e+ +  e  +ql ++++el e l+++e+++  l+e+l ++ee+l +++  +e++ + l+e+
  MMETSP1137-20121227|5001_1 604 RSLEDQHEAVVHEYSLLLTGQLEAQRQHFEEQLKDAKVQHAlQLREAEAALAAQSESLQKDKAEMEREVRLAAKRAAAADSLISRTREELSFNVELNAQLMQNQAELREMLKQSEKREAALKEKLVDMEEQLRDMSIHFEAQIKILQEE 752
                 67899999999**********************99988876377888889999*********************************************************************************999998887777763 PP

>> TIGR00599  rad18: DNA repair protein rad18
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.1     0.068   1.4e+02     107     149 ..      89     132 ..      49     152 .. 0.58
   2 ?   12.1   0.9   8.8e-06     0.018      29      70 ..     450     493 ..     433     499 .. 0.77
   3 ?   -3.5   0.6      0.47   9.7e+02     235     241 ..     684     690 ..     626     732 .. 0.44

  Alignments for each domain:
  == domain 1    score: -0.7 bits;  conditional E-value: 0.068
   TIGR00599 107 v.esedlaapessskkklieeeeakgvdeeseddlrsasssraa 149
                   + e + a++++     ++ ++a + d+ + d+  +a  sr+ 
  MMETSP1137-20121227|5001_1  89 FeDDEAVDADSAADSTLDVAADSAADADDDHADPSEAAATSREI 132
                 12334444444444444444444444444444444444444443 PP

  == domain 2    score: 12.1 bits;  conditional E-value: 8.8e-06
   TIGR00599  29 ChvCkdffk...aPvlt.sCsHtFCslCiRrcLseepkCPlCraed 70 
                 C vC + ++   + + t  C+HtF   C+Rr+   ++ CP+Cr  +
  MMETSP1137-20121227|5001_1 450 CAVCLERLDpaiSGIFTiLCNHTFHTECLRRW--RDASCPVCRHVQ 493
                 8888888872222344535************8..6899*****765 PP

  == domain 3    score: -3.5 bits;  conditional E-value: 0.47
   TIGR00599 235 vdksstg 241
                 ++ s t+
  MMETSP1137-20121227|5001_1 684 SLISRTR 690
                 2222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (783 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       289  (0.0704534); expected 82.0 (0.02)
Passed bias filter:                      104  (0.0253535); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.56u 0.14s 00:00:00.70 Elapsed: 00:00:00.69
# Mc/sec: 1497.79
//
Query:       MMETSP1137-20121227|5002_1  [L=355]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.015   12.4   0.0       0.02   11.9   0.0    1.2  1  TIGR00216 ispH_lytB: 4-hydroxy-3-methylbut-2-enyl diphosphate reductase
      0.054   10.3   0.0       0.36    7.6   0.0    1.9  2  TIGR01836 PHA_synth_III_C: poly(R)-hydroxyalkanoic acid synthase, class III, PhaC subunit


Domain annotation for each model (and alignments):
>> TIGR00216  ispH_lytB: 4-hydroxy-3-methylbut-2-enyl diphosphate reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   9.9e-06      0.02       7      64 ..     203     260 ..     199     304 .. 0.78

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 9.9e-06
   TIGR00216   7 alGfCfGVerAvkiaeearkelgkkvyvlgeivHNkevverLrekgvali.ledldela 64 
                  +GfC+G +rA++  + +r +  + v+ +g  + N+ ++++Lr    a++ +edl+  +
  MMETSP1137-20121227|5002_1 203 VMGFCYGGSRALRYTTGTRPN-AATVVWYGTPIDNPATLSKLRGPVCAIFgTEDLQIPQ 260
                 58*****************98.67777789999**********9988887656655444 PP

>> TIGR01836  PHA_synth_III_C: poly(R)-hydroxyalkanoic acid synthase, class III, PhaC subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   0.0   0.00018      0.36     132     173 ..     195     236 ..     177     244 .. 0.80
   2 ?    1.1   0.0     0.017        35     281     346 ..     239     307 ..     235     310 .. 0.83

  Alignments for each domain:
  == domain 1    score: 7.6 bits;  conditional E-value: 0.00018
   TIGR01836 132 tseldkisllGiCqGGtfsliyaaLeedkiknLvtmvtpvDf 173
                 + +  k+ ++G+C GG+ +l y++ ++ +   +v   tp+D 
  MMETSP1137-20121227|5002_1 195 KCNXRKLAVMGFCYGGSRALRYTTGTRPNAATVVWYGTPIDN 236
                 4466799*****************999999999999999985 PP

  == domain 2    score: 1.1 bits;  conditional E-value: 0.017
   TIGR01836 281 dLknikvpvLniyaekDhlvapdaskaLkdlvss..edkt.elsfktGhigivvsgkaqkevlpaigkW 346
                  L+ ++ pv  i+ ++D  ++  ++ +++ ++++   +++ +  + +Gh      ++++ke +p i+ W
  MMETSP1137-20121227|5002_1 239 TLSKLRGPVCAIFGTEDLQIPQRKVDSFRAALGEakVEHEvVSYYGAGHAFFKDMEQVRKEEMPVIAGW 307
                 58889999*********************999984323331445678**999999************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (355 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        69  (0.0168211); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.27u 0.15s 00:00:00.42 Elapsed: 00:00:00.36
# Mc/sec: 1301.56
//
Query:       MMETSP1137-20121227|5003_1  [L=322]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (322 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       161  (0.0392491); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.14s 00:00:00.39 Elapsed: 00:00:00.38
# Mc/sec: 1118.43
//
Query:       MMETSP1137-20121227|5004_1  [L=231]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (231 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        85  (0.0207216); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.13s 00:00:00.33 Elapsed: 00:00:00.32
# Mc/sec: 952.80
//
Query:       MMETSP1137-20121227|5006_1  [L=1185]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.3e-14   49.4  56.3    1.2e-13   48.5   9.5    5.9  5  TIGR02232 myxo_disulf_rpt: Myxococcus cysteine-rich repeat
    0.00087   16.2   0.0     0.0013   15.7   0.0    1.1  1  TIGR03952 metzin_BF0631: zinc-dependent metalloproteinase lipoprotein, BF0631 family
  ------ inclusion threshold ------
      0.035   10.9   0.1      0.053   10.2   0.1    1.1  1  TIGR03935 fragilysin: fragilysin


Domain annotation for each model (and alignments):
>> TIGR02232  myxo_disulf_rpt: Myxococcus cysteine-rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.4      0.72   9.9e+02      16      26 ..     465     475 ..     463     476 .. 0.90
   2 !   48.5   9.5   8.7e-17   1.2e-13       3      38 .]     482     517 ..     480     517 .. 0.97
   3 !   10.7   3.0   5.5e-05     0.075       2      18 ..     527     545 ..     526     550 .. 0.90
   4 !    9.3   6.8   0.00015       0.2       2      30 ..     670     693 ..     669     701 .. 0.74
   5 ?    0.5   0.2     0.089   1.2e+02      21      28 ..     842     849 ..     840     853 .. 0.84

  Alignments for each domain:
  == domain 1    score: -2.5 bits;  conditional E-value: 0.72
   TIGR02232  16 DDgNtvsgDGC 26 
                 DDg     DGC
  MMETSP1137-20121227|5006_1 465 DDGASDLTDGC 475
                 99999999*** PP

  == domain 2    score: 48.5 bits;  conditional E-value: 8.7e-17
   TIGR02232   3 tCGDGiieegEeCDDgNtvsgDGCSatCrlEeGfaC 38 
                  CG+G++e++EeCDD N+v+gDGCSa+C +E G++C
  MMETSP1137-20121227|5006_1 482 LCGNGRLEGDEECDDANVVDGDGCSAQCAIECGYRC 517
                 6*********************************** PP

  == domain 3    score: 10.7 bits;  conditional E-value: 5.5e-05
   TIGR02232   2 etCGDGiieeg..EeCDDg 18 
                 ++CGDG +e++  EeCDD 
  MMETSP1137-20121227|5006_1 527 PHCGDGVLEPQlgEECDDD 545
                 57********999*****5 PP

  == domain 4    score: 9.3 bits;  conditional E-value: 0.00015
   TIGR02232   2 etCGDGiieegEeCDDgNtvsgDGCSatC 30 
                 +tCGDG i ++EeCDD  +     C   C
  MMETSP1137-20121227|5006_1 670 PTCGDGVIGNTEECDDASA-----CCVGC 693
                 79**************865.....55555 PP

  == domain 5    score: 0.5 bits;  conditional E-value: 0.089
   TIGR02232  21 vsgDGCSa 28 
                  +gDGC a
  MMETSP1137-20121227|5006_1 842 SNGDGCDA 849
                 59****75 PP

>> TIGR03952  metzin_BF0631: zinc-dependent metalloproteinase lipoprotein, BF0631 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   9.2e-07    0.0013     220     251 ..     398     429 ..     342     439 .. 0.80

  Alignments for each domain:
  == domain 1    score: 15.7 bits;  conditional E-value: 9.2e-07
   TIGR03952 220 pekksvlyssadvvetlAHELgHYlGLfHvFg 251
                  + ++   +s d   t+AHELgH lG  H+Fg
  MMETSP1137-20121227|5006_1 398 SAATGLSSRSGDTWLTIAHELGHNLGGAHTFG 429
                 45567888999********************8 PP

>> TIGR03935  fragilysin: fragilysin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.1   3.9e-05     0.053     327     355 ..     399     427 ..     386     434 .. 0.89

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 3.9e-05
   TIGR03935 327 eaaglsttsltaPktlahelGhiLGaeht 355
                  a+gls+ s     t+ahelGh LG  ht
  MMETSP1137-20121227|5006_1 399 AATGLSSRSGDTWLTIAHELGHNLGGAHT 427
                 5789999999999***************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1185 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       121  (0.0294978); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.67u 0.16s 00:00:00.83 Elapsed: 00:00:00.56
# Mc/sec: 2743.98
//
Query:       MMETSP1137-20121227|5007_1  [L=324]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (324 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        74  (0.01804); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.15s 00:00:00.40 Elapsed: 00:00:00.45
# Mc/sec: 950.32
//
Query:       MMETSP1137-20121227|5008_1  [L=297]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (297 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       123  (0.0299854); expected 82.0 (0.02)
Passed bias filter:                       96  (0.0234032); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.16s 00:00:00.39 Elapsed: 00:00:00.40
# Mc/sec: 980.02
//
Query:       MMETSP1137-20121227|5010_1  [L=725]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.023   11.9   0.0      0.039   11.2   0.0    1.4  1  TIGR00557 pdxA: 4-hydroxythreonine-4-phosphate dehydrogenase


Domain annotation for each model (and alignments):
>> TIGR00557  pdxA: 4-hydroxythreonine-4-phosphate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   9.5e-06     0.039     135     165 ..     489     519 ..     396     523 .. 0.85

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 9.5e-06
   TIGR00557 135 LaelagtkkvvMmlaaekLrvalvttHipLk 165
                 Lael g+++vv ml +++L+++l t H+pL+
  MMETSP1137-20121227|5010_1 489 LAELDGQRRVVFMLGSDGLEMVLRTLHMPLQ 519
                 79999************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (725 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       100  (0.0243784); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.18s 00:00:00.64 Elapsed: 00:00:00.52
# Mc/sec: 1840.23
//
Query:       MMETSP1137-20121227|5011_1  [L=346]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (346 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        56  (0.0136519); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.15s 00:00:00.40 Elapsed: 00:00:00.33
# Mc/sec: 1383.89
//
Query:       MMETSP1137-20121227|5012_1  [L=133]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (133 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        52  (0.0126767); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.13s 00:00:00.27 Elapsed: 00:00:00.28
# Mc/sec: 626.95
//
Query:       MMETSP1137-20121227|5013_1  [L=434]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (434 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        85  (0.0207216); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.17s 00:00:00.49 Elapsed: 00:00:00.54
# Mc/sec: 1060.80
//
Query:       MMETSP1137-20121227|5015_1  [L=284]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (284 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        97  (0.023647); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.13s 00:00:00.35 Elapsed: 00:00:00.34
# Mc/sec: 1102.50
//
Query:       MMETSP1137-20121227|5016_1  [L=526]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (526 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       162  (0.0394929); expected 82.0 (0.02)
Passed bias filter:                      123  (0.0299854); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.19s 00:00:00.56 Elapsed: 00:00:00.62
# Mc/sec: 1119.78
//
Query:       MMETSP1137-20121227|5017_1  [L=244]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.5e-92  307.8   0.4    2.3e-79  264.4   0.0    2.0  2  TIGR03284 thym_sym: thymidylate synthase
    1.6e-15   55.0   0.0    2.1e-15   54.6   0.0    1.1  1  TIGR03283 thy_syn_methano: thymidylate synthase, methanogen type


Domain annotation for each model (and alignments):
>> TIGR03284  thym_sym: thymidylate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.4   0.0     5e-15     1e-11      41      91 ..       2      52 ..       1      59 [. 0.92
   2 !  264.4   0.0   1.1e-82   2.3e-79     118     296 .]      58     244 .]      52     244 .] 0.95

  Alignments for each domain:
  == domain 1    score: 42.4 bits;  conditional E-value: 5e-15
   TIGR03284 41 fpllttkkvelrlivsellwflkGdtnikylkdhkvsiwdewafekfvkse 91
                fpllttk v  r +++ellwf+ Gdt  k l+d+k +iwd  + +++++s 
  MMETSP1137-20121227|5017_1  2 FPLLTTKSVXWRGVAEELLWFVSGDTSAKTLQDKKIKIWDGNSSRDYLDSI 52
                9***************************************99989998875 PP

  == domain 2    score: 264.4 bits;  conditional E-value: 1.1e-82
   TIGR03284 118 keGdlGdvyGkqwrewktkdg........etidqikkvieeikknpdsrrlivsawnpedvdkmalppchtlfqfyvadgklscqlyqrsadvflGvpfniasyallthliaketglevGefvhtlGdahlysnhleqvklqlereprelpklklneekkdifdfeledieledydshpaikapvav 296
                 + GdlG+vyG qwr++ ++          + +dqik+vi++ik++p+ rr+i+sawnp+d+++malppch + qfyva+g lscq+yqrsad+ lGvpfniasyallt l+a++tgl+ G+fvh +Gdah+y+nh++ +++ql rep+ +p+l++++++k+i d +++d+e+++y++h +ik ++av
  MMETSP1137-20121227|5017_1  58 EVGDLGPVYGWQWRHFGAEYKtmhddytgQGVDQIKQVIDAIKNKPHDRRIILSAWNPKDIPQMALPPCHMFAQFYVANGELSCQMYQRSADLGLGVPFNIASYALLTCLLAHVTGLKRGDFVHVIGDAHVYNNHIDALEQQLLREPKLFPQLHISDKVKNIEDCTFADLEITGYNPHGKIKMEMAV 244
                 68*************9876544445555599*********************************************************************************************************************************************************997 PP

>> TIGR03283  thy_syn_methano: thymidylate synthase, methanogen type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.6   0.0     1e-18   2.1e-15      57     199 ..      39     194 ..      23     196 .. 0.85

  Alignments for each domain:
  == domain 1    score: 54.6 bits;  conditional E-value: 1e-18
   TIGR03283  57 slseekleeYekql.lsperdkgfvYtYgnRLrey............fgeidqiesiierLkespesRRAiaitwdPvqDikvdevPClqlvqfkirdnkleltalfRsnDvlsAlvanaiglaklqeyvaekvgveqgtlttisisaHiYerdfd 199
                  +++++ ++Y +++ l+  +  ++   Yg   r++             +++dqi+++i+ +k++p+ RR i   w+P+   ++  +PC +  qf + +++l  ++  Rs D++  +  n+ + a l+  +a+ +g++ g ++++   aH+Y++ +d
  MMETSP1137-20121227|5017_1  39 IWDGNSSRDYLDSIgLTHXEVGDLGPVYGWQWRHFgaeyktmhddytGQGVDQIKQVIDAIKNKPHDRRIILSAWNPKDIPQMALPPCHMFAQFYVANGELSCQMYQRSADLGLGVPFNIASYALLTCLLAHVTGLKRGDFVHVIGDAHVYNNHID 194
                 57777777777777666666566655566666666667788888877445***************************99999999******************************************************************87665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (244 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       120  (0.029254); expected 82.0 (0.02)
Passed bias filter:                      115  (0.0280351); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.25u 0.15s 00:00:00.40 Elapsed: 00:00:00.51
# Mc/sec: 631.48
//
Query:       MMETSP1137-20121227|5019_1  [L=695]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.017   10.8   0.3        0.2    7.3   0.1    2.0  2  TIGR01299 synapt_SV2: synaptic vesicle protein SV2


Domain annotation for each model (and alignments):
>> TIGR01299  synapt_SV2: synaptic vesicle protein SV2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.0    0.0031        13     506     550 ..     410     454 ..     398     479 .. 0.84
   2 ?    7.3   0.1   4.9e-05       0.2     523     593 ..     561     630 ..     547     660 .. 0.75

  Alignments for each domain:
  == domain 1    score: 1.3 bits;  conditional E-value: 0.0031
   TIGR01299 506 hrggeydndkflglklksvsfkdslfkectfedvtsvntyfknct 550
                  rg++    +f gl+ + v f+ +++++  f+    + + f+ +t
  MMETSP1137-20121227|5019_1 410 FRGADLRGSRFDGLQXQGVKFECAMLESSSFDGADLSHADFRMAT 454
                 578999999***********************9998888888777 PP

  == domain 2    score: 7.3 bits;  conditional E-value: 4.9e-05
   TIGR01299 523 svsfkdslfkectfedvtsvntyfknctfidtlfentdleeykfvdselvnssflhnkegcqldvdgddes 593
                 s  ++d+l+++c f      n  +   t+  t fe ++l+   f  s     s + n + + +d++g+d  
  MMETSP1137-20121227|5019_1 561 STKWQDALLDDCDFARSQMDNVKMDAMTLQRTTFEASNLMGASFRSSVAAS-SDFSNTKAAGIDFTGTDLK 630
                 556788889999999888888888999999999999999888886665544.4446666778888888743 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (695 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       116  (0.0282789); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.17s 00:00:00.66 Elapsed: 00:00:00.39
# Mc/sec: 2352.11
//
Query:       MMETSP1137-20121227|5020_1  [L=409]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (409 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       128  (0.0312043); expected 82.0 (0.02)
Passed bias filter:                      110  (0.0268162); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.16s 00:00:00.47 Elapsed: 00:00:00.40
# Mc/sec: 1349.59
//
Query:       MMETSP1137-20121227|5021_1  [L=326]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (326 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        93  (0.0226719); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.16s 00:00:00.42 Elapsed: 00:00:00.33
# Mc/sec: 1303.89
//
Query:       MMETSP1137-20121227|5022_1  [L=221]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00084   15.4   0.1      0.001   15.2   0.1    1.1  1  TIGR04075 bacter_Pnkp: polynucleotide kinase-phosphatase
  ------ inclusion threshold ------
      0.012   12.9   0.1       0.02   12.2   0.0    1.3  1  TIGR00668 apaH: bis(5'-nucleosyl)-tetraphosphatase (symmetrical)


Domain annotation for each model (and alignments):
>> TIGR04075  bacter_Pnkp: polynucleotide kinase-phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.1   4.9e-07     0.001     218     328 ..      37     149 ..       7     161 .. 0.61

  Alignments for each domain:
  == domain 1    score: 15.2 bits;  conditional E-value: 4.9e-07
   TIGR04075 218 thpegrkavflGdlvdrGpdspdvlrlvmsmvkagaa.....lcvpGnhee.kllrklrGrkvklthGlaetleqlaaeseefree..vkefldglvshyvlddGklvvahaGlkeeyq 328
                 + p+   +v  Gdl+drG+d+  v+ l++++ +  aa     + + Gnhe   ll  lr     ++     +     a++ +f+++  v ++l  + + +    Gk v  haGl+ +y 
  MMETSP1137-20121227|5022_1  37 HAPARTVLVQTGDLIDRGDDTQTVFALMQQLERDAAAagsrvVRLLGNHELmNLLGDLR----YVSSADTASYGGTHARQAAFAQDgsVGQWL--MKANICAIVGKTVFVHAGLHPKYA 149
                 34555556789***************998876655541211134579999413443333....334444445555555566665541145554..344555555777777888777776 PP

>> TIGR00668  apaH: bis(5'-nucleosyl)-tetraphosphatase (symmetrical)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   9.8e-06      0.02      26      77 ..      38      97 ..      26     154 .. 0.61

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 9.8e-06
   TIGR00668 26 dpakdtlyltgdlvargdkslevlryvksl.......gdavrlvlgnhdlh.llavalgi 77
                 pa+  l  tgdl+ rgd++  v+ +++ l       g  v  +lgnh+l  ll  +  +
  MMETSP1137-20121227|5022_1 38 APARTVLVQTGDLIDRGDDTQTVFALMQQLerdaaaaGSRVVRLLGNHELMnLLGDLRYV 97
                699999***************999999887333222244455679***974144433333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (221 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        75  (0.0182838); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.24u 0.14s 00:00:00.38 Elapsed: 00:00:00.32
# Mc/sec: 911.55
//
Query:       MMETSP1137-20121227|5023_1  [L=272]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (272 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        98  (0.0238908); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.13s 00:00:00.36 Elapsed: 00:00:00.35
# Mc/sec: 1025.74
//
Query:       MMETSP1137-20121227|5024_1  [L=708]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.5e-12   42.2   0.1    8.1e-12   41.6   0.1    1.1  1  TIGR03903 TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
    0.00044   16.7   0.0    0.00076   16.0   0.0    1.3  1  TIGR01982 UbiB: 2-polyprenylphenol 6-hydroxylase
    0.00098   16.5   0.0     0.0015   15.9   0.0    1.2  1  TIGR03724 arch_bud32: Kae1-associated kinase Bud32


Domain annotation for each model (and alignments):
>> TIGR03903  TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.6   0.1   5.9e-15   8.1e-12      25     181 ..      53     199 ..      32     204 .. 0.86

  Alignments for each domain:
  == domain 1    score: 41.6 bits;  conditional E-value: 5.9e-15
   TIGR03903  25 FrReialCarLshPnivaLlDsGeaedgllFavFeyveGrtlrevLaadGaLpaaetgrLmlqvLDalaaahd.aGvvhRDLkPqnimvsaadveshakvLDFGigaLlpgvedadeatltrttevlGsPaYaaPeqLRgepvtaksDlYaWGLivle 181
                  +Re+a   + +h  +v+        + +l+   ey e    + + + + +L  ++ +++ +  L +l   h+ + ++hRD+k  ni+v+++++    k+ DFG++a l+g       tlt+ + v+G+P + +Pe +      a++D+++ G+  +e
  MMETSP1137-20121227|5024_1  53 TQRELASLRECQHERVVRYHGAYL-HESRLWIAMEYCECSMHAVLRQRKTPLEEKQIAAVCAEALKGLHYLHAeRQIIHRDVKAGNILVTQRGQ---VKLADFGVSAQLSG-------TLTKRNTVIGTPMWMSPEMIEAGQYDARTDIWSLGITAIE 199
                 589999999999999999865544.55599999****9987777778999*********************96368***************997...5778******9999.......5889999****************************98887 PP

>> TIGR01982  UbiB: 2-polyprenylphenol 6-hydroxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0   5.6e-07   0.00076     235     307 ..      84     158 ..      74     168 .. 0.74

  Alignments for each domain:
  == domain 1    score: 16.0 bits;  conditional E-value: 5.6e-07
   TIGR01982 235 tlewidgipvsdleklkeaGldlkalaenlvesflkqvl...rdgfFHaDlHpGNilvakdgkiialDfGivgrls 307
                  +e+ +  +++ + + +++ l+ k++a+  +e +    +   +  + H D+ +GNilv++ g++ + DfG+ ++ls
  MMETSP1137-20121227|5024_1  84 AMEYCEC-SMHAVLRQRKTPLEEKQIAAVCAEALKGLHYlhaERQIIHRDVKAGNILVTQRGQVKLADFGVSAQLS 158
                 5666663.566666777777888888887777665444311155799************************99987 PP

>> TIGR03724  arch_bud32: Kae1-associated kinase Bud32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   1.1e-06    0.0015      68     138 ..      77     156 ..      50     192 .. 0.73

  Alignments for each domain:
  == domain 1    score: 15.9 bits;  conditional E-value: 1.1e-06
   TIGR03724  68 dpeekkivmeyiegkklkdlleekel........ellkevGelvgklH.kagivhgDlttsNiiv.kddklyliDfGLgkk 138
                 ++++  i mey e + ++ +l+++++         ++ e+ + +  lH + +i+h D+   Ni+v + +++ l DfG + +
  MMETSP1137-20121227|5024_1  77 HESRLWIAMEYCECS-MHAVLRQRKTpleekqiaAVCAEALKGLHYLHaERQIIHRDVKAGNILVtQRGQVKLADFGVSAQ 156
                 556667888887754.455555545456666445666666666677774468*************4578999*****9976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (708 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        75  (0.0182838); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.48u 0.15s 00:00:00.63 Elapsed: 00:00:00.71
# Mc/sec: 1316.17
//
Query:       MMETSP1137-20121227|5025_1  [L=186]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (186 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       137  (0.0333983); expected 82.0 (0.02)
Passed bias filter:                      102  (0.0248659); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.17s 00:00:00.37 Elapsed: 00:00:00.39
# Mc/sec: 629.49
//
Query:       MMETSP1137-20121227|5026_1  [L=382]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (382 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        79  (0.0192589); expected 82.0 (0.02)
Passed bias filter:                       44  (0.0107265); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.14s 00:00:00.42 Elapsed: 00:00:00.42
# Mc/sec: 1200.47
//
Query:       MMETSP1137-20121227|5027_1  [L=300]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (300 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       144  (0.0351048); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.18s 00:00:00.44 Elapsed: 00:00:00.48
# Mc/sec: 824.93
//
Query:       MMETSP1137-20121227|5028_1  [L=348]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (348 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        66  (0.0160897); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.16s 00:00:00.42 Elapsed: 00:00:00.40
# Mc/sec: 1148.31
//
Query:       MMETSP1137-20121227|5029_1  [L=228]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.6e-30  102.2   0.1    1.5e-29  101.0   0.0    1.5  1  TIGR02396 diverge_rpsU: rpsU-divergently transcribed protein


Domain annotation for each model (and alignments):
>> TIGR02396  diverge_rpsU: rpsU-divergently transcribed protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  101.0   0.0   3.7e-33   1.5e-29       2     158 ..      66     228 .]      65     228 .] 0.94

  Alignments for each domain:
  == domain 1    score: 101.0 bits;  conditional E-value: 3.7e-33
   TIGR02396   2 aklldallelvpflGwteeallkaaeelglsdilakllpeegladliefferkldaallealkake.lledlkvrekielavrlrlkmvkpiiehlkqalallakpknlaeslrlllelvDeIwylagDkSs......DfnwYtKRalLsavysstelfmiqDk 158
                 ++llda+l+ vp++Gwt  al++aa  +gls++ +++lp++++ +l+ +f+ ++da+l ++l +k+ ++e l+v+++++la ++rl m +p++  ++qalal a+p+n+ esl+ + +l++ ++ + g  ++        +   K a+L+avy ++el+m++Dk
  MMETSP1137-20121227|5029_1  66 VRLLDAALNKVPEHGWTVGALSAAAVSIGLSPAAHGMLPRGPI-ELVRHFSSACDAKLQAELVSKAdEFESLEVKNRLVLAMQTRLRMLEPYVATWPQALALKAQPTNVSESLSDAHALASLLLDACGAGARapiapaAIDAHLKCASLAAVYGAAELYMLTDK 228
                 79****************************************9.8****************9999889********************************************************9999887622222257999********************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (228 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        92  (0.0224281); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.22u 0.14s 00:00:00.36 Elapsed: 00:00:00.43
# Mc/sec: 699.85
//
Query:       MMETSP1137-20121227|5030_1  [L=169]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (169 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        79  (0.0192589); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.17s 00:00:00.34 Elapsed: 00:00:00.31
# Mc/sec: 719.55
//
Query:       MMETSP1137-20121227|5031_1  [L=441]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.6e-15   53.2   0.0    3.4e-15   52.8   0.0    1.1  1  TIGR03903 TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
      1e-05   23.0   0.3    1.6e-05   22.3   0.2    1.3  1  TIGR03724 arch_bud32: Kae1-associated kinase Bud32


Domain annotation for each model (and alignments):
>> TIGR03903  TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.8   0.0   1.7e-18   3.4e-15       2     159 ..     135     282 ..     134     305 .. 0.83

  Alignments for each domain:
  == domain 1    score: 52.8 bits;  conditional E-value: 1.7e-18
   TIGR03903   2 tghkvaikllRedaaeeerlvaRFrReialCarLshPnivaLlDsGeaedgllFavFeyveGrtlrevLaadGaLpaaetg.rLmlqvLDalaaahdaGvvhRDLkPqnimvsaadveshakvLDFGigaLlpgvedadeatltrttevlGsPaYaaPe 159
                 t++  a+k+l +        v    Re ++   L+hPni++L    e++   l+ v e   G  l ++L     + ++ t+ + +  +LDa+   h++   hRDLkP+n+++s   ++ + k +D G++      +        +   v G+ +Y aPe
  MMETSP1137-20121227|5031_1 135 TEETFAVKILDKT--MADNGVEDMVREFKMLRTLQHPNIIKLYAAYETPR-KLYLVTEIATGGELMKRLGETARVYSEATVlHYVRTMLDAIDYMHKKNCAHRDLKPENVLLSXMSEDATIKXVDLGLSRFFDX-RX-------LMXTVCGTHKYLAPE 282
                 7778888888776..4556678889**********************999.99****************877766666655388999****************************************9876432.22.......222355566666665 PP

>> TIGR03724  arch_bud32: Kae1-associated kinase Bud32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.3   0.2   7.6e-09   1.6e-05      42     138 ..     154     262 ..     118     271 .. 0.69

  Alignments for each domain:
  == domain 1    score: 22.3 bits;  conditional E-value: 7.6e-09
   TIGR03724  42 eRtrkEarllseakkagvntPvvydvdpeekkivmeyiegkklkdlleekel........ellkevGelvgklHkagivhgDlttsNiivk....ddklyliDfGLgkk 138
                 e +++E+++l+++++  +   +    +p++  +v e   g +l + l e+          ++++++ +++  +Hk++ +h Dl ++N++++    d ++  +D+GL+++
  MMETSP1137-20121227|5031_1 154 EDMVREFKMLRTLQHPNIIKLYAAYETPRKLYLVTEIATGGELMKRLGETARvyseatvlHYVRTMLDAIDYMHKKNCAHRDLKPENVLLSxmseDATIKXVDLGLSRF 262
                 4567777777777776665555555555566666666555554444444333466777789****************************966655777888*****987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (441 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        76  (0.0185275); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.33u 0.11s 00:00:00.44 Elapsed: 00:00:00.73
# Mc/sec: 797.36
//
Query:       MMETSP1137-20121227|5032_1  [L=203]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (203 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        61  (0.0148708); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.12s 00:00:00.31 Elapsed: 00:00:00.32
# Mc/sec: 837.31
//
Query:       MMETSP1137-20121227|5034_1  [L=286]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.8e-12   45.1   0.0    1.5e-11   42.7   0.0    1.9  2  TIGR01444 fkbM_fam: methyltransferase, FkbM family


Domain annotation for each model (and alignments):
>> TIGR01444  fkbM_fam: methyltransferase, FkbM family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.0     0.055   2.2e+02       2      22 ..      23      43 ..      22      48 .. 0.75
   2 !   42.7   0.0   3.7e-15   1.5e-11      21     138 ..      97     213 ..      90     219 .. 0.82

  Alignments for each domain:
  == domain 1    score: 0.1 bits;  conditional E-value: 0.055
   TIGR01444  2 viDiGAniGdvslvfaravae 22
                ++ +GAn+G   + f++++++
  MMETSP1137-20121227|5034_1 23 MLNVGANKGYEVASFLERYQP 43
                578******887777776655 PP

  == domain 2    score: 42.7 bits;  conditional E-value: 3.7e-15
   TIGR01444  21 aegrviafEPlpdllekleenvklnnlkn.vkllnaAvgdregeleftvsddatgnsslaadselaeeseieVevvtlddlveeaglekvdllKiDvEGaEleVLrglaetleekvpai 138
                 ++++v+a+E    ++++++   k+ ++++ v++++ Av++ + ++++ +    +++ +   ++ ++++ + eV + tldd+v  ++l++   + iD+EG+++ VL+g+++tl+++  +i
  MMETSP1137-20121227|5034_1  97 RHVEVHAVELMDTNAAIIRNITKELHVNDiVHVYQQAVSNGTSLVQIPSRAHLGSERGSICTH-KCRKHK-EVMSATLDDFVMMHNLAPLFHVIIDTEGWDALVLEGFRATLKRQQIGI 213
                 56899****999999999999999999889*********999988887666555555544555.455553.6************************************99988775544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (286 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       131  (0.0319356); expected 82.0 (0.02)
Passed bias filter:                      106  (0.0258411); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.25u 0.17s 00:00:00.42 Elapsed: 00:00:00.79
# Mc/sec: 477.83
//
Query:       MMETSP1137-20121227|5035_1  [L=179]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (179 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        39  (0.00950756); expected 82.0 (0.02)
Passed bias filter:                       39  (0.00950756); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.12s 00:00:00.29 Elapsed: 00:00:00.33
# Mc/sec: 715.94
//
Query:       MMETSP1137-20121227|5036_1  [L=735]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   3.4e-131  436.6   0.8   8.5e-118  392.4   0.1    2.0  2  TIGR00955 3a01204: pigment precursor permease
      1e-96  322.7  12.8    4.1e-60  201.4   0.2    3.6  3  TIGR00956 3a01205: pleiotropic drug resistance family protein
      7e-36  122.1   7.3    9.9e-28   95.2   0.0    2.8  3  TIGR02857 CydD: thiol reductant ABC exporter, CydD subunit
    3.4e-35  119.2   0.0      6e-27   92.3   0.0    2.2  2  TIGR03608 L_ocin_972_ABC: putative bacteriocin export ABC transporter, lactococcin 972 group
    1.8e-31  107.2   0.2    6.5e-26   89.1   0.0    2.2  2  TIGR02982 heterocyst_DevA: ABC exporter ATP-binding subunit, DevA family
    2.1e-31  107.1   0.2    7.6e-24   82.4   0.0    2.2  2  TIGR02673 FtsE: cell division ATP-binding protein FtsE
    2.4e-31  106.8   0.2    1.6e-24   84.5   0.0    2.2  2  TIGR03864 PQQ_ABC_ATP: ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system
    2.5e-31  106.8   0.0    3.2e-24   83.5   0.0    2.3  2  TIGR02315 ABC_phnC: phosphonate ABC transporter, ATP-binding protein
      9e-31  105.0   0.1    3.3e-23   80.2   0.0    2.3  2  TIGR00968 3a0106s01: sulfate ABC transporter, ATP-binding protein
    3.6e-30  103.1   1.0    1.9e-26   90.9   0.0    2.2  2  TIGR01188 drrA: daunorubicin resistance ABC transporter, ATP-binding protein
    4.5e-30  102.6   0.1    1.1e-23   81.6   0.0    2.1  2  TIGR00972 3a0107s01c2: phosphate ABC transporter, ATP-binding protein
    2.3e-29  100.0   0.2    2.6e-19   66.8   0.0    2.2  2  TIGR00958 3a01208: antigen peptide transporter 2
    1.8e-28   97.6   0.1    7.2e-22   76.0   0.0    2.2  2  TIGR00960 3a0501s02: type II secretory pathway family protein
      3e-28   96.6   4.4    2.3e-21   73.8   0.2    2.6  3  TIGR02868 CydC: thiol reductant ABC exporter, CydC subunit
    7.4e-28   95.3   0.4    1.2e-20   71.6   0.0    2.2  2  TIGR03873 F420-0_ABC_ATP: proposed F420-0 ABC transporter, ATP-binding protein
    1.7e-27   94.2   0.0    1.8e-20   71.2   0.0    2.2  2  TIGR02211 LolD_lipo_ex: lipoprotein releasing system, ATP-binding protein
      4e-27   93.0   0.8    4.5e-20   69.9   0.0    2.2  2  TIGR03410 urea_trans_UrtE: urea ABC transporter, ATP-binding protein UrtE
    8.2e-27   91.6   1.0    1.1e-23   81.3   0.0    2.5  2  TIGR03375 type_I_sec_LssB: type I secretion system ATPase
      1e-26   91.6   0.2    2.5e-20   70.6   0.0    2.1  2  TIGR03258 PhnT: 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT
    2.2e-26   90.6   0.1    5.4e-17   59.8   0.0    2.7  2  TIGR01978 sufC: FeS assembly ATPase SufC
    2.5e-26   90.1   2.3      8e-20   68.9   0.3    2.4  2  TIGR01166 cbiO: cobalt ABC transporter, ATP-binding protein
    3.2e-26   90.1   0.4    3.7e-20   70.3   0.0    2.2  2  TIGR01189 ccmA: heme ABC exporter, ATP-binding protein CcmA
    1.4e-25   88.1   0.2    4.4e-19   66.8   0.0    2.4  2  TIGR02769 nickel_nikE: nickel import ATP-binding protein NikE
    1.7e-25   87.5   0.6    2.2e-18   64.2   0.1    2.7  2  TIGR03005 ectoine_ehuA: ectoine/hydroxyectoine ABC transporter, ATP-binding protein EhuA
      2e-25   87.6   0.5    7.9e-20   69.2   0.1    2.2  2  TIGR03265 PhnT2: putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein
      3e-25   86.6   0.1    1.2e-18   64.7   0.0    2.1  2  TIGR02203 MsbA_lipidA: lipid A export permease/ATP-binding protein MsbA
    9.5e-25   85.4   0.5    6.2e-20   69.7   0.0    2.2  2  TIGR03771 anch_rpt_ABC: anchored repeat-type ABC transporter, ATP-binding subunit
    1.1e-24   84.9   0.1    4.3e-17   59.8   0.0    2.1  2  TIGR02204 MsbA_rel: ABC transporter, permease/ATP-binding protein
    3.9e-24   83.4   0.1    3.3e-19   67.3   0.0    2.2  2  TIGR03740 galliderm_ABC: lantibiotic protection ABC transporter, ATP-binding subunit
    1.8e-23   81.2   0.2    1.2e-18   65.3   0.0    2.2  2  TIGR02142 modC_ABC: molybdate ABC transporter, ATP-binding protein
    2.2e-23   80.7   0.3      3e-19   67.1   0.0    2.2  2  TIGR01187 potA: polyamine ABC transporter, ATP-binding protein
    3.4e-23   79.8   0.3    2.3e-16   57.3   0.0    2.6  2  TIGR01842 type_I_sec_PrtD: type I secretion system ATPase
    3.5e-23   80.3   0.2    1.9e-17   61.6   0.0    2.2  2  TIGR03411 urea_trans_UrtD: urea ABC transporter, ATP-binding protein UrtD
    5.8e-23   78.9   0.0    1.6e-15   54.4   0.0    2.5  2  TIGR02633 xylG: D-xylose ABC transporter, ATP-binding protein
    8.1e-23   78.9   0.1    1.7e-17   61.5   0.0    2.3  2  TIGR02324 CP_lyasePhnL: phosphonate C-P lyase system protein PhnL
    3.9e-22   76.6   0.2    8.9e-18   62.3   0.0    2.2  2  TIGR02770 nickel_nikD: nickel import ATP-binding protein NikD
    4.5e-22   76.7   0.2    1.2e-17   62.2   0.0    2.2  2  TIGR03522 GldA_ABC_ATP: gliding motility-associated ABC transporter ATP-binding subunit GldA
    5.4e-22   76.0   0.6    7.1e-20   69.0   0.1    2.1  2  TIGR01288 nodI: nodulation ABC transporter NodI
      1e-21   74.7   0.2      1e-15   54.9   0.0    2.1  2  TIGR03796 NHLM_micro_ABC1: NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein
    1.1e-21   74.9   0.5      1e-15   55.1   0.0    2.3  2  TIGR03797 NHLM_micro_ABC2: NHLM bacteriocin system ABC transporter, ATP-binding protein
    1.7e-20   71.4   0.1    2.2e-16   57.9   0.0    2.2  2  TIGR01277 thiQ: thiamine ABC transporter, ATP-binding protein
    9.8e-20   68.8   0.1    2.9e-16   57.4   0.0    2.2  2  TIGR01186 proV: glycine betaine/L-proline transport ATP binding subunit
    1.5e-19   67.8   0.0    4.3e-15   53.1   0.0    2.1  2  TIGR01193 bacteriocin_ABC: ABC-type bacteriocin transporter
    2.5e-18   63.6   0.1    7.5e-14   48.7   0.0    2.5  2  TIGR01846 type_I_sec_HlyB: type I secretion system ATPase
    2.3e-17   60.8   0.0    4.6e-15   53.3   0.0    2.1  2  TIGR02314 ABC_MetN: D-methionine ABC transporter, ATP-binding protein
    3.6e-17   59.9   0.1    8.5e-07   25.7   0.0    3.1  3  TIGR03269 met_CoM_red_A2: methyl coenzyme M reductase system, component A2
    4.1e-17   60.4   0.0    4.1e-14   50.5   0.0    2.1  2  TIGR01184 ntrCD: nitrate ABC transporter, ATP-binding proteins C and D
      1e-16   56.9   0.8    1.1e-15   53.5   0.1    2.1  2  TIGR01257 rim_protein: rim ABC transporter
      9e-15   52.6   0.7    7.5e-05   20.2   0.0    3.2  3  TIGR02323 CP_lyasePhnK: phosphonate C-P lyase system protein PhnK
    1.1e-13   48.5   0.1    4.8e-10   36.5   0.0    2.1  2  TIGR01192 chvA: glucan exporter ATP-binding protein
    2.4e-12   44.3   0.1    5.3e-10   36.6   0.0    2.4  2  TIGR03415 ABC_choXWV_ATP: choline ABC transporter, ATP-binding protein
    7.7e-12   42.4   0.2    0.00045   16.8   0.0    3.1  3  TIGR03719 ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family
    2.9e-08   29.5   0.2    0.00056   15.3   0.0    2.1  2  TIGR01271 CFTR_protein: cystic fibrosis transmembrane conductor regulator (CFTR)
    1.5e-06   24.8   0.0    4.4e-06   23.4   0.0    1.7  2  TIGR01194 cyc_pep_trnsptr: cyclic peptide transporter
      4e-06   24.5   0.5      0.025   12.1   0.0    2.3  2  TIGR02322 phosphon_PhnN: phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN
    6.3e-06   22.5   1.6     0.0093   12.0   0.0    3.0  3  TIGR00630 uvra: excinuclease ABC subunit A
    8.7e-06   23.3   0.2       0.02   12.2   0.1    2.2  2  TIGR00157 TIGR00157: ribosome small subunit-dependent GTPase A
      1e-05   21.8   1.7      0.022   10.7   0.1    2.1  2  TIGR00929 VirB4_CagE: type IV secretion/conjugal transfer ATPase, VirB4 family
    3.5e-05   21.7   1.6      0.085   10.7   0.1    2.3  2  TIGR03499 FlhF: flagellar biosynthesis protein FlhF
    0.00017   16.9   0.0     0.0011   14.2   0.0    2.0  2  TIGR00957 MRP_assoc_pro: multi drug resistance-associated protein (MRP)
    0.00033   18.8   0.5       0.38    8.9   0.0    2.4  2  TIGR02528 EutP: ethanolamine utilization protein, EutP
     0.0005   17.7   0.0        0.3    8.7   0.0    2.3  2  TIGR01313 therm_gnt_kin: carbohydrate kinase, thermoresistant glucokinase family
     0.0007   17.0   0.1        0.6    7.4   0.0    2.6  2  TIGR03420 DnaA_homol_Hda: DnaA regulatory inactivator Hda
     0.0018   15.8   0.9       0.66    7.4   0.1    2.3  2  TIGR03263 guanyl_kin: guanylate kinase
      0.003   14.9   0.1       0.98    6.7   0.0    2.2  2  TIGR02640 gas_vesic_GvpN: gas vesicle protein GvpN
     0.0038   14.9   1.0       0.61    7.7   0.1    2.3  2  TIGR02237 recomb_radB: DNA repair and recombination protein RadB
      0.005   13.1   0.0       0.18    8.0   0.0    2.2  2  TIGR00954 3a01203: peroxysomal long chain fatty acyl transporter
     0.0074   13.0   1.2       0.26    7.9   0.1    2.2  2  TIGR01613 primase_Cterm: phage/plasmid primase, P4 family, C-terminal domain
  ------ inclusion threshold ------
      0.015   13.0   1.3        1.4    6.5   0.1    2.3  2  TIGR00231 small_GTP: small GTP-binding protein domain
      0.016   12.5   0.9        1.9    5.6   0.0    2.4  2  TIGR03167 tRNA_sel_U_synt: tRNA 2-selenouridine synthase
       0.02   11.6   0.1        1.2    5.7   0.0    2.1  2  TIGR00224 pckA: phosphoenolpyruvate carboxykinase (ATP)
      0.023   12.2   0.3        2.9    5.4   0.0    2.5  2  TIGR03598 GTPase_YsxC: ribosome biogenesis GTP-binding protein YsxC
      0.045   11.2   0.6        2.6    5.4   0.0    2.3  2  TIGR01351 adk: adenylate kinases
      0.051   11.3   1.9        2.3    5.9   0.1    2.4  2  TIGR00150 HI0065_YjeE: ATPase, YjeE family
      0.073   10.5   1.2        3.8    4.9   0.1    2.2  2  TIGR00585 mutl: DNA mismatch repair protein MutL
      0.094    9.1   1.1        3.9    3.7   0.0    2.4  2  TIGR03922 T7SS_EccA: type VII secretion AAA-ATPase EccA
        0.1    8.9   4.5        1.2    5.4   0.2    2.5  3  TIGR00602 rad24: checkpoint protein rad24
       0.12   10.0   1.5        4.5    4.9   0.1    2.4  2  TIGR00152 TIGR00152: dephospho-CoA kinase
       0.12   10.2   1.9        5.9    4.7   0.1    2.3  2  TIGR00176 mobB: molybdopterin-guanine dinucleotide biosynthesis protein B
       0.22    8.3   2.1        2.8    4.7   0.1    2.1  2  TIGR00382 clpX: ATP-dependent Clp protease, ATP-binding subunit ClpX
       0.31    6.7   1.9        3.6    3.2   0.1    2.0  2  TIGR03348 VI_IcmF: type VI secretion protein IcmF


Domain annotation for each model (and alignments):
>> TIGR00955  3a01204: pigment precursor permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.9   0.1   1.1e-13   5.4e-12      19      89 ..      46     118 ..      34     130 .. 0.75
   2 !  392.4   0.1  1.7e-119  8.5e-118      30     559 ..     181     706 ..     150     721 .. 0.89

  Alignments for each domain:
  == domain 1    score: 42.9 bits;  conditional E-value: 1.1e-13
   TIGR00955  19 ekkllvkrleeala...rkkpekellknvsGvaksGellAvlGsSGaGKtTLlnalafrsekglkvsgdvllnG 89 
                 ++ l+v++ + +++   +kk+   +lkn +G++++G+  A+lG+SG+GKtTL+ +l++r++ g  ++g++   G
  MMETSP1137-20121227|5036_1  46 SRGLQVTFSKLCYTvplKKKKSLAILKNLAGAFQPGQATALLGPSGSGKTTLMXVLSNRKTVGK-IEGEIRFGG 118
                 355555555555542225568999***********************************99874.335565555 PP

  == domain 2    score: 392.4 bits;  conditional E-value: 1.7e-119
   TIGR00955  30 alarkkpekellknvsGvaksGellAvlGsSGaGKtTLlnalafrsekglkvsgdvllnGekveakemraisayvqqddlfiptltvrehLmfsahlrlkrrltkkekrerveevleelgLrkcadtrigvpgrvkglSgGerkRlalaselltdPilLfcDEPTsGLDsfsaasvvkvLkklaqkgktviltiHQPsselfelfdkiillaeGrvvylGspeeavkffs.elglpcPenynpadFvlkvlavepgseee..sretiekicdaeaksklsreveentnlasgkekklvkdseneekikykasfltqflvllkRsllsvlrdplllkvrllqvivvavligliylg..qeltqkgvqningalFllltemtFqtvfavinvftaelpvflREtasglYrlsaYylaktlaelPlliilpllflsivYwmiglksgalkfltalllvvlvanvatsfglllscafestslalsvappvvipfllfgGfflnvdsvPvyfkwlsylSwfrYanEallinqwsdvkeie 559
                 +  +kk+  ++lkn +G ++ G+  A+lG+SG+GKtTL+++l++r++ g  ++g++l  G+  ++k++r+ ++yv+q+d +++ ltvr+ Lm++a+l+l  + tkk k+ rv+e le+lgL+ cadt+ig    ++g+SgG+ kR  +a  l+++P+++f+DEPTsGLDsf+a++v  vL++la+ g+t+++tiH P++  f+ fd +++l +G ++y+G  ++   ff+ +lg ++P  +  +++++++ + +++   +   + ++e++ +++a+s+ +++ ++      +++k+l++  +  e+  ++ + l+ +  +l   +l+  ++ + l  r++ + + ++li ++y+g   + + + +q++ + l+++++   +   +a ++ +t ++p+f RE+a+g+Y+   Yyl+k++ e  l +++++lf   v+ +  l+ ++  f++ + l+++    ++ +++ +++++ + + a +++p  v + + fgG+fl +d++P ++ w+s++S++rYa+ a++ nq+ d   +e
  MMETSP1137-20121227|5036_1 181 VPLKKKQSLTILKNLAGSFEAGKATALLGPSGSGKTTLMDVLSNRKTVGK-IEGEILFGGRTPTKKMLRRLCGYVEQFDTLVGELTVRQMLMYTAELKLTTNFTKKDKELRVQEALETLGLTACADTVIG-GTLKRGVSGGQLKRTNIALSLISQPPVIFLDEPTSGLDSFMANEVATVLRELARLGRTIVCTIHSPTAYAFSCFDAVMMLRDGMTIYEGPQDHIGAFFEtSLGRQVPPGVSLPEWLVDLTSGSQSAVMQtgAVYSAEELANQYANSEFGKKRMQLNI---EQAKTLQASPTPIERDGHHPGPLKALSTILSYRMLKHYKSGEYLGPRIGDKFIFGLLILTLYWGigSNTDVQSIQSTASLLYFIVALCGY-GAAAFVPSLTLDRPLFYREVADGCYHPLVYYLSKFIEEATLCVLTSFLFSLLVFFACKLQGSFFIFVLSYYLTTM---MGILIAYGVAAVVPTLEAANALLPTYVTLCMYFGGLFLLFDKIPDAWFWFSWTSFLRYAWGAMMNNQFGDSVPGE 706
                 234567899*************************************9995.5599***************************************************************************.66689*********************************************************************************************7368******************9999875554478889999999999999988766554...3456777777777888889999******************************************63445567888888888877776666.567899******************************************************998777777766655...577789999************************************************************998877 PP

>> TIGR00956  3a01205: pleiotropic drug resistance family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.1   0.0   9.3e-20   4.7e-18     735     824 ..      27     116 ..       5     130 .. 0.77
   2 !  201.4   0.2   8.1e-62   4.1e-60     754     979 ..     167     392 ..     133     392 .. 0.88
   3 !   73.2   3.8     4e-23     2e-21     274     614 ..     379     701 ..     376     711 .. 0.84

  Alignments for each domain:
  == domain 1    score: 62.1 bits;  conditional E-value: 9.3e-20
   TIGR00956 735 stdltdeseevneeveeekesgeeifewrdltyevkikkek.rvlLdevdGwvkPGkltALmGasGAGkttLlnvLaeRvttGvitegdrl 824
                 + d+ +  +++ +e+++++  g ++ + + l+y+v++kk+k + +L+++ G ++PG+ tAL+G sG GkttL+ vL++R+t+G i++++r+
  MMETSP1137-20121227|5036_1  27 KNDVENGGSRQPKETTTKHSRGLQVTFSK-LCYTVPLKKKKsLAILKNLAGAFQPGQATALLGPSGSGKTTLMXVLSNRKTVGKIEGEIRF 116
                 44444444444445555545667787777.*******8765279******************************************66655 PP

  == domain 2    score: 201.4 bits;  conditional E-value: 8.1e-62
   TIGR00956 754 esgeeifewrdltyevkikk.ekrvlLdevdGwvkPGkltALmGasGAGkttLlnvLaeRvttGvitegdrlvngr.kldssFqRsiGYvqqqDlHletstvreaLrfsAylRqpkevskkekneyveevikllelesyadAvvGvpGe.GLnveqRkrltigveLvAkPklllFlDePtsGLDsqtawsivkllrkladaGqailCtiHqPsailleeFDrLLllqkG 979
                   g    ++rdl y v++kk +++++L+++ G ++ Gk tAL+G sG GkttL++vL++R+t+G i+ g++l +gr + ++  +R  GYv+q D  + + tvr  L ++A l+ + + +kk+k+  v+e ++ l+l+  ad v+G + + G++  q kr  i+  L+ +P  ++FlDePtsGLDs  a  +  +lr+la  G++i+CtiH P a  +  FD +++l+ G
  MMETSP1137-20121227|5036_1 167 SRG-LQISFRDLKYSVPLKKkQSLTILKNLAGSFEAGKATALLGPSGSGKTTLMDVLSNRKTVGKIE-GEILFGGRtPTKKMLRRLCGYVEQFDTLVGELTVRQMLMYTAELKLTTNFTKKDKELRVQEALETLGLTACADTVIGGTLKrGVSGGQLKRTNIALSLISQP-PVIFLDEPTSGLDSFMANEVATVLRELARLGRTIVCTIHSPTAYAFSCFDAVMMLRDG 392
                 233.34579********98615689******************************************.777777762678889999**********************************************************977666********************.89*****************************************************987 PP

  == domain 3    score: 73.2 bits;  conditional E-value: 4e-23
   TIGR00956 274 ayelFdkvvvlyeGkqiyfGkadkakeyFek.mGfkCpdRqttadFLtsltspkereikkgyekkvprtakefekywrnspeyae.lekeideylerveeekekeaikesavakkskrtrkkskytvsfsqqvkyilaRellrlkgdasvtlikvvgniimalilssvfynleknts..dfyvrggalffallfnafsslleiaslyearpivekhrkyalyhPsadalasilselPvkliesvvfniilyflvnlrreagrFffylLilflatlvmshlFrsigavtktlseAmtlaallllalslytgfviprkeilkWskWiayvnPlayafesllvnefha 614
                 a+  Fd v++l +G  iy G++d++ ++Fe+ +G + p+  + +++L +lts ++  + +        +a+e+ + + ns+ +++ ++ +i++ ++                 + s +  +   +     + +  il+  +l+ +++  +   ++  + i +l++ ++++ + +nt+  ++ + ++ l+f + ++ + + + + sl   rp+++++ +   yhP    l+ ++ e  + +++s +f+++++f  +l+   g+Ff + L   l+t++   +   ++av+ tl+ A++l    + + + ++g  +   +i+  + W ++ + l+ya+ ++++n f +
  MMETSP1137-20121227|5036_1 379 AFSCFDAVMMLRDGMTIYEGPQDHIGAFFETsLGRQVPPGVSLPEWLVDLTSGSQSAVMQ---TGAVYSAEELANQYANSEFGKKrMQLNIEQAKTL----------------QASPTPIERDGHHPGPLKALSTILSYRMLKHYKSGEYLGPRIGDKFIFGLLILTLYWGIGSNTDvqSIQSTASLLYFIVALCGYGAAAFVPSLTLDRPLFYREVADGCYHPLVYYLSKFIEEATLCVLTSFLFSLLVFFACKLQ---GSFFIFVLSYYLTTMMGILIAYGVAAVVPTLEAANALLPTYVTLCMYFGGLFLLFDKIPDAWFWFSWTSFLRYAWGAMMNNQFGD 701
                 7999*************************9648********************9887765...4456689**********98764144455444433................2222333333344444555666666667777778889999*******************9977522667778889*****************************************************************9985...89999888888877666666778**************99999999999**9999*****9999******************9965 PP

>> TIGR02857  CydD: thiol reductant ABC exporter, CydD subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.5   0.1   7.5e-10   3.8e-08     281     384 ..       6     119 ..       4     134 .. 0.68
   2 !   95.2   0.0     2e-29   9.9e-28     287     519 ..     138     377 ..     124     389 .. 0.80
   3 ?   -2.0   1.0       5.5   2.8e+02     116     169 ..     586     641 ..     581     669 .. 0.58

  Alignments for each domain:
  == domain 1    score: 30.5 bits;  conditional E-value: 7.5e-10
   TIGR02857 281 gaqyHakaegvaaaealvevldaeeqpeaekapltaaass....slelenvsvay...egrk.palkevsltvepgelvalvGaSGaGKstllklllg..fvepteGailvnga 384
                 ++q H +  +++aa + +   ++  +   +++p +++ ++    +++++++ ++    + ++ ++lk++  +++pg+ +al+G+SG+GK+tl+ +l+   +v   eG+i+ +g+
  MMETSP1137-20121227|5036_1   6 ASQAHTRPSATTAAYSRAMNGKNDVENGGSRQPKETTTKHsrglQVTFSKLCYTVplkKKKSlAILKNLAGAFQPGQATALLGPSGSGKTTLMXVLSNrkTVGKIEGEIRFGGR 119
                 566666666666655444433333333333444433333355779*****9998844234447889******************************862256667899998887 PP

  == domain 2    score: 95.2 bits;  conditional E-value: 2e-29
   TIGR02857 287 kaegvaaaealvevldaeeqpeaekapltaaassslelenvsvay...egrk.palkevsltvepgelvalvGaSGaGKstllklllg..fvepteGailvngaelaeldadswrkqiawvpQkPllfeg.tvaenirlarkdaseaevkealeragldelvkalp..qgleteiGer.gagLSgGqrqRlaLArallrdapllllDEPtahLDaeteaevlealrela.egrtvllvaHrlal 519
                 k++g+  ++++   ++ +   + +++ +++ +  ++++++++++    + ++  +lk++  ++e+g+ +al+G+SG+GK+tl+++l+   +v   eG+il +g+     +++ +r+ +++v Q  +l+ + tv++ +    +   +++  +  ++  ++e +++l+  +  +t iG    +g+SgGq +R  +A  l+++ p++ lDEPt+ LD+  ++ev   lrela  grt++   H++  
  MMETSP1137-20121227|5036_1 138 KTQGRMCVNEVKVQIE-KGSSTRKESTAKRSRGLQISFRDLKYSVplkKKQSlTILKNLAGSFEAGKATALLGPSGSGKTTLMDVLSNrkTVGKIEGEILFGGR---TPTKKMLRRLCGYVEQFDTLVGElTVRQMLMYTAELKLTTNFTKKDKELRVQEALETLGltACADTVIGGTlKRGVSGGQLKRTNIALSLISQPPVIFLDEPTSGLDSFMANEVATVLRELArLGRTIVCTIHSPTA 377
                 5677788888877777.55556666666666666********998432233467899*****************************9622566779********...4556789*********99998662666666655555566777777888888888877651145788887552789***********************************************679999999999765 PP

  == domain 3    score: -2.0 bits;  conditional E-value: 5.5
   TIGR02857 116 dYfarylpqlvlavivplvilaavltadwi..salillltlPlipiFmiLiGsaaq 169
                  Y+++++ + +l+v++  ++ + v++a  +  s  i +l+  l  +  iLi + ++
  MMETSP1137-20121227|5036_1 586 YYLSKFIEEATLCVLTSFLFSLLVFFACKLqgSFFIFVLSYYLTTMMGILIAYGVA 641
                 56777777777777777776666665544311334444444444444445444433 PP

>> TIGR03608  L_ocin_972_ABC: putative bacteriocin export ABC transporter, lactococcin 972 group
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.7   0.0   5.8e-08     3e-06       6      50 ..      63     107 ..      60     132 .. 0.84
   2 !   92.3   0.0   1.2e-28     6e-27       6     196 ..     184     377 ..     181     389 .. 0.86

  Alignments for each domain:
  == domain 1    score: 24.7 bits;  conditional E-value: 5.8e-08
   TIGR03608   6 kkfkdkeilkklslkiekGelvaivGesGsGKstlLnilgllekk 50 
                 kk+k+ +ilk+l   ++ G+ +a++G sGsGK+tl+ +l++  ++
  MMETSP1137-20121227|5036_1  63 KKKKSLAILKNLAGAFQPGQATALLGPSGSGKTTLMXVLSNRKTV 107
                 6788889*******************************9876654 PP

  == domain 2    score: 92.3 bits;  conditional E-value: 1.2e-28
   TIGR03608   6 kkfkdkeilkklslkiekGelvaivGesGsGKstlLnilgllekkd..sgkvilegkekaklkskkaskllreklgylFqnfaLlenetveenlela..lklk.kkskkekekkkkevlekvglekklkkki.....yelsgGekqRvalarillkeselilADEPtgsLDkknreevlellkelkeegktiiivtHdpev 196
                 kk+++ +ilk+l  ++e+G+ +a++G sGsGK+tl+ +l++  ++   +g++++ g++        ++k+lr   gy+ q  +L+ + tv++ l+ +  lkl+ + +kk+ke +++e+le++gl+++ ++ i       +sgG+ +R  +a  l+ ++++i+ DEPt+ LD+   +ev ++l+el++ g+ti++  H+p+ 
  MMETSP1137-20121227|5036_1 184 KKKQSLTILKNLAGSFEAGKATALLGPSGSGKTTLMDVLSNRKTVGkiEGEILFGGRT-------PTKKMLRRLCGYVEQFDTLVGELTVRQMLMYTaeLKLTtNFTKKDKELRVQEALETLGLTACADTVIggtlkRGVSGGQLKRTNIALSLISQPPVIFLDEPTSGLDSFMANEVATVLRELARLGRTIVCTIHSPTA 377
                 6788899********************************9988765225888887777.......67899**********************99865224443156788999999***********99998843333468*********************************************************9865 PP

>> TIGR02982  heterocyst_DevA: ABC exporter ATP-binding subunit, DevA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0   2.9e-05    0.0015      19      63 ..      69     115 ..      58     132 .. 0.82
   2 !   89.1   0.0   1.3e-27   6.5e-26      19     201 ..     190     374 ..     172     394 .. 0.84

  Alignments for each domain:
  == domain 1    score: 16.0 bits;  conditional E-value: 2.9e-05
   TIGR02982  19 qvlfdinleiepgeiviltGpsGsGkttlltligglrsvq..eGelk 63 
                  +l+++    +pg+   l GpsGsGkttl+ +++  ++v   eGe++
  MMETSP1137-20121227|5036_1  69 AILKNLAGAFQPGQATALLGPSGSGKTTLMXVLSNRKTVGkiEGEIR 115
                 57888888999********************9999888742256665 PP

  == domain 2    score: 89.1 bits;  conditional E-value: 1.3e-27
   TIGR02982  19 qvlfdinleiepgeiviltGpsGsGkttlltligglrsvqeGelkvlgkelkgasekelvqvrrkiGyifqahnllesltaeqnvrmalelk..eklsakeakakaeelleavglee.....rldykpedlsgGqkqrvaiaralvarPklvladePtaaldkksgrevvellqklareqgttillvthd 201
                  +l+++  + e+g    l GpsGsGkttl+ +++  ++v  G+  + g+ l g    + + +rr  Gy+ q   l+  lt++q +  ++elk  +++++k+++ +++e le++gl             + +sgGq +r  ia +l+++P +++ dePt+ ld+  ++ev ++l++lar  g ti+   h 
  MMETSP1137-20121227|5036_1 190 TILKNLAGSFEAGKATALLGPSGSGKTTLMDVLSNRKTV--GK--IEGEILFGGRTPTKKMLRRLCGYVEQFDTLVGELTVRQMLMYTAELKltTNFTKKDKELRVQEALETLGLTAcadtvIGGTLKRGVSGGQLKRTNIALSLISQPPVIFLDEPTSGLDSFMANEVATVLRELARL-GRTIVCTIHS 374
                 578888889999*********************998887..44..44788999999*****************************9998876226799999**************994443222356789***********************************************95.6666666665 PP

>> TIGR02673  FtsE: cell division ATP-binding protein FtsE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.8   0.0   2.7e-07   1.3e-05      10      75 ..      63     130 ..      56     153 .. 0.84
   2 !   82.4   0.0   1.5e-25   7.6e-24      10     201 ..     184     379 ..     172     393 .. 0.82

  Alignments for each domain:
  == domain 1    score: 22.8 bits;  conditional E-value: 2.7e-07
   TIGR02673  10 eyaagveaLkdvslkiekgeflfltGasGaGkttllklllgaekp..srGevevagedvarlrerelp 75 
                 + +++ ++Lk++   +++g+ + l G+sG+Gkttl+ +l ++++    +Ge+++ g+  + + +r++ 
  MMETSP1137-20121227|5036_1  63 KKKKSLAILKNLAGAFQPGQATALLGPSGSGKTTLMXVLSNRKTVgkIEGEIRFGGRVPTLHPHRRVR 130
                 55678899********************************9988622579999999876666666665 PP

  == domain 2    score: 82.4 bits;  conditional E-value: 1.5e-25
   TIGR02673  10 eyaagveaLkdvslkiekgeflfltGasGaGkttllklllgaekpsrGevevagedvarlrerelpllRrkigvvfqDfkllkdrtvlenvalalevr...gkkeeeiqkrveevlelvgledkakal.....peelsgGeqqRvaiaRaivnkPelllaDePtGnlDdelserildllkelnkrGttvivathdeelve 201
                 + +++ ++Lk++  ++e+g+ + l G+sG+Gkttl+ +l ++++   G+  ++ge +   r+ +  +lRr  g v q   l+ + tv + +  + e++   + ++++ + rv+e+le++gl+  a+++      + +sgG  +R+ ia +++++P+++  DePt  lD+ +++++ ++l+el + G t++ + h  + ++
  MMETSP1137-20121227|5036_1 184 KKKQSLTILKNLAGSFEAGKATALLGPSGSGKTTLMDVLSNRKTV--GK--IEGEILFGGRTPTKKMLRRLCGYVEQFDTLVGELTVRQMLMYTAELKlttNFTKKDKELRVQEALETLGLTACADTViggtlKRGVSGGQLKRTNIALSLISQPPVIFLDEPTSGLDSFMANEVATVLRELARLGRTIVCTIHSPTAYA 379
                 55678899*******************************987764..43..4566666666777779*********************9987765554111345677889************999875222225779*********************************************************977655 PP

>> TIGR03864  PQQ_ABC_ATP: ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   0.0   1.4e-06   7.2e-05      16      62 ..      70     118 ..      63     132 .. 0.78
   2 !   84.5   0.0   3.1e-26   1.6e-24      16     221 ..     191     405 ..     181     414 .. 0.83

  Alignments for each domain:
  == domain 1    score: 20.2 bits;  conditional E-value: 1.4e-06
   TIGR03864  16 alddvsltvakgefvaLLGpnGaGkstLfslltrLye..akegeikvaG 62 
                 +l++++ + ++g+ +aLLGp G+Gk+tL+ +l+  ++  + egei+  G
  MMETSP1137-20121227|5036_1  70 ILKNLAGAFQPGQATALLGPSGSGKTTLMXVLSNRKTvgKIEGEIRFGG 118
                 5777788899**********************97554114467777666 PP

  == domain 2    score: 84.5 bits;  conditional E-value: 3.1e-26
   TIGR03864  16 alddvsltvakgefvaLLGpnGaGkstLfslltrLyeak..egeikvaGldlrrapkealarl.GvvfqqstlDldlsveqnlryhaaLh...Glsraeaeerieealarlglaeraeekv.....reLnGGhrrrveiarallhePklLLlDeatvGLDiesraalveevrelvreeglsvLWathlvd..eveaedrlvvlhkGkvlaqGaaaelaa 221
                 +l++++ + + g+ +aLLGp G+Gk+tL+ +l+  ++    egei   G      +k++l+rl G v q  tl  +l+v+q l y a+L+    +++++ e r++eal+ lgl++ a++ +     r ++GG+ +r +ia +l+ +P ++ lDe+t GLD    +++ + +rel+ + g +++ + h       +  d +++l  G+   +G ++++ a
  MMETSP1137-20121227|5036_1 191 ILKNLAGSFEAGKATALLGPSGSGKTTLMDVLSNRKTVGkiEGEILFGGRT---PTKKMLRRLcGYVEQFDTLVGELTVRQMLMYTAELKlttNFTKKDKELRVQEALETLGLTACADTVIggtlkRGVSGGQLKRTNIALSLISQPPVIFLDEPTSGLDSFMANEVATVLRELA-RLGRTIVCTIHSPTayAFSCFDAVMMLRDGMTIYEGPQDHIGA 405
                 67778888999*********************9766543227777777754...44556666559************************8333567889999*************99987654445789*********************************************9.6677788888864411567789999999999999999888765 PP

>> TIGR02315  ABC_phnC: phosphonate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.0   0.0   7.8e-07     4e-05      16      61 ..      69     116 ..      59     150 .. 0.83
   2 !   83.5   0.0   6.4e-26   3.2e-24      15     233 ..     189     403 ..     172     407 .. 0.83

  Alignments for each domain:
  == domain 1    score: 21.0 bits;  conditional E-value: 7.8e-07
   TIGR02315  16 qalknvnleikkGelvaviGlsGaGkstllrsinrlve..issgsill 61 
                 ++lkn+  ++++G+ +a++G+sG+Gk+tl+  +++ ++  + +g+i +
  MMETSP1137-20121227|5036_1  69 AILKNLAGAFQPGQATALLGPSGSGKTTLMXVLSNRKTvgKIEGEIRF 116
                 68999999***********************99764442255666655 PP

  == domain 2    score: 83.5 bits;  conditional E-value: 6.4e-26
   TIGR02315  15 kqalknvnleikkGelvaviGlsGaGkstllrsinrlve..issgsillegkevtklkkkelrklrkkigmifqeynlierltvlenvLsgrlgakstlksllglfseedke.kAlelLervglaelaakra.....dqLsGGqqqRvaiaRalaqqpklilaDEPiasLDpksskqvmdllkrinkekgitvivnlHq.vdlakkyadrivglkageivfdgassel 233
                  ++lkn+  +++ G+ +a++G+sG+Gk+tl+  +++ ++  + +g+il+ g++        +++lr+  g++ q   l+ +ltv +      l ++  lk l + f+++dke +  e+Le +gl++ a++         +sGGq +R  ia +l+ qp +i+ DEP++ LD   +++v  +l+++++  g t+++++H+   +a +  d ++ l++g  +++g+ +++
  MMETSP1137-20121227|5036_1 189 LTILKNLAGSFEAGKATALLGPSGSGKTTLMDVLSNRKTvgKIEGEILFGGRTP------TKKMLRRLCGYVEQFDTLVGELTVRQ-----MLMYTAELK-LTTNFTKKDKElRVQEALETLGLTACADTVIggtlkRGVSGGQLKRTNIALSLISQPPVIFLDEPTSGLDSFMANEVATVLRELAR-LGRTIVCTIHSpTAYAFSCFDAVMMLRDGMTIYEGPQDHI 403
                 56899***************************9986444225666666666554......5678999*******999***999865.....445666776.55667777776256789*******999876522222568*********************************************86.89********8467999999**************998765 PP

>> TIGR00968  3a0106s01: sulfate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.3   0.0   3.2e-07   1.6e-05      12      65 ..      67     122 ..      61     133 .. 0.76
   2 !   80.2   0.0   6.6e-25   3.3e-23      11     210 ..     187     395 ..     181     405 .. 0.83

  Alignments for each domain:
  == domain 1    score: 22.3 bits;  conditional E-value: 3.2e-07
   TIGR00968  12 dfqalddvdlevktGslvallGpsGsGkstllrviaGlek..pdsGrilleGrdvt 65 
                 ++ +l+++    + G+ +allGpsGsGk+tl+ v++  +   + +G+i++ Gr  t
  MMETSP1137-20121227|5036_1  67 SLAILKNLAGAFQPGQATALLGPSGSGKTTLMXVLSNRKTvgKIEGEIRFGGRVPT 122
                 56778888888999*********************976652244677777777554 PP

  == domain 2    score: 80.2 bits;  conditional E-value: 6.6e-25
   TIGR00968  11 GdfqalddvdlevktGslvallGpsGsGkstllrviaGlek..pdsGrilleGrdvtrvkvrdreiGfvfqhyalfkhltvrdniafGleir...kkdkakikakveellelvqleklgdr.....ypsqlsGGqrqrvalaralavepqvllldepfgaldakvrkelrawlrklhdevkvttvfvthd.qeealevadrivvlekGkie 210
                  ++++l+++  + + G+ +allGpsGsGk+tl+ v++  +   + +G+il+ Gr  t+  + +r  G+v q  +l   ltvr+ + +  e++   + +k+ +  +v+e le ++l+  +d          +sGGq +r  +a +l  +p v++ldep + ld+ + +e+ + lr+l  ++  t v   h   + a    d +++l++G  +
  MMETSP1137-20121227|5036_1 187 QSLTILKNLAGSFEAGKATALLGPSGSGKTTLMDVLSNRKTvgKIEGEILFGGRTPTKKML-RRLCGYVEQFDTLVGELTVRQMLMYTAELKlttNFTKKDKELRVQEALETLGLTACADTviggtLKRGVSGGQLKRTNIALSLISQPPVIFLDEPTSGLDSFMANEVATVLRELA-RLGRTIVCTIHSpTAYAFSCFDAVMMLRDGMTI 395
                 5778999999999***********************988762256799******9998665.689**********************999984444455556679**********9988862111156789********************************************96.566677777775256788888888888888655 PP

>> TIGR01188  drrA: daunorubicin resistance ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.9   0.1   0.00086     0.043      17      40 ..      79     102 ..      64     109 .. 0.85
   2 !   90.9   0.0   3.7e-28   1.9e-26       9     207 ..     192     399 ..     184     461 .. 0.84

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 0.00086
   TIGR01188  17 eegevfglLGPnGAGKtttikmLt 40 
                 + g+  +lLGP G GKtt++ +L+
  MMETSP1137-20121227|5036_1  79 QPGQATALLGPSGSGKTTLMXVLS 102
                 6688899*************9997 PP

  == domain 2    score: 90.9 bits;  conditional E-value: 3.7e-28
   TIGR01188   9 vdgvnlkveegevfglLGPnGAGKtttikmLttllk..PdsGtarvaGyDvvrepdevRrsigvvpqkasvdedLtarenlellgel...yglpkkeaeeraeellelvelkeaadkkvk.....tysgGmrrrlelaasliaqPevlfLDEPtiGLDprtrraiwdlieelkkegvtilltthylee.adkladrvaiidkGkiiaedt 207
                 ++++  + e+g+  +lLGP G GKtt++++L+   +    +G+    G   +   + +Rr  g v q  ++  +Lt r+ l+ ++el    ++ kk +e r++e le++ l+  ad  ++       sgG+ +r ++a sli+qP v+fLDEPt+GLD+  ++++  +++el + g ti+ t h     a +  d v +++ G  i e+ 
  MMETSP1137-20121227|5036_1 192 LKNLAGSFEAGKATALLGPSGSGKTTLMDVLSNRKTvgKIEGEILFGGR--TPTKKMLRRLCGYVEQFDTLVGELTVRQMLMYTAELkltTNFTKKDKELRVQEALETLGLTACADTVIGgtlkrGVSGGQLKRTNIALSLISQPPVIFLDEPTSGLDSFMANEVATVLRELARLGRTIVCTIHSPTAyAFSCFDAVMMLRDGMTIYEGP 399
                 5666667789999******************974330034555555554..4444689****************************944347889999******************99862222268*****************************************************999986541444558888888888877765 PP

>> TIGR00972  3a0107s01c2: phosphate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.0   3.8e-06   0.00019      16      67 ..      70     118 ..      60     124 .. 0.81
   2 !   81.6   0.0   2.3e-25   1.1e-23      15     230 ..     190     403 ..     178     410 .. 0.85

  Alignments for each domain:
  == domain 1    score: 18.7 bits;  conditional E-value: 3.8e-06
   TIGR00972  16 alkdvnleikknkvtaliGpsGcGkstllrslnrlndlveevrieGkvlleg 67 
                  lk++   ++  + tal+GpsG+Gk+tl+  l   +      +ieG++ + g
  MMETSP1137-20121227|5036_1  70 ILKNLAGAFQPGQATALLGPSGSGKTTLMXVLSNRK---TVGKIEGEIRFGG 118
                 578888889999****************99986544...3457888888766 PP

  == domain 2    score: 81.6 bits;  conditional E-value: 2.3e-25
   TIGR00972  15 ealkdvnleikknkvtaliGpsGcGkstllrslnrlndlveevrieGkvllegkdiydkkldvvelrkkvGmvfqkpnpfp.msiydnvayg..lrlkgikdkkeldeiveesLkkaalwdevkdkl..kksalsLsGGqqqrlciaralavePevlLlDePtsaLDpiatekieeliqeLkkk.ytivivthn.mqqaarvsdktaffleGelveegeteqi 230
                 + lk++  ++++ k tal+GpsG+Gk+tl+  l          +ieG++l+ g+  ++k      lr+  G v q  +     ++ + ++y+  l+l+   +kk+ + +v+e+L+  +l     d +   +   ++sGGq +r  ia +l  +P v+ lDePts LD+ +++++  +++eL++   tiv   h+  ++a  + d ++++ +G  + eg+ ++i
  MMETSP1137-20121227|5036_1 190 TILKNLAGSFEAGKATALLGPSGSGKTTLMDVLSN---RKTVGKIEGEILFGGRTPTKK-----MLRRLCGYVEQFDTLVGeLTVRQMLMYTaeLKLTTNFTKKDKELRVQEALETLGLTA-CADTVigGTLKRGVSGGQLKRTNIALSLISQPPVIFLDEPTSGLDSFMANEVATVLRELARLgRTIVCTIHSpTAYAFSCFDAVMMLRDGMTIYEGPQDHI 403
                 4688999999*******************988765...444569*********987766.....89*******99999886589999999984456666678999999**********995.5555412345678**********************************************9876899999998467999************99999988766 PP

>> TIGR00958  3a01208: antigen peptide transporter 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.0   0.1   3.5e-10   1.7e-08     471     529 ..      42     103 ..      24     110 .. 0.82
   2 !   66.8   0.0   5.1e-21   2.6e-19     475     672 ..     167     373 ..     155     402 .. 0.81

  Alignments for each domain:
  == domain 1    score: 31.0 bits;  conditional E-value: 3.5e-10
   TIGR00958 471 apknleG.kveFqdVsFsYPsrpdk..pvlkdLtftlepGevvalVGPsGsGKStvaallen 529
                 + k+ +G +v+F++  ++ P + +k   +lk+L+   +pG+++al GPsGsGK t + +l n
  MMETSP1137-20121227|5036_1  42 TTKHSRGlQVTFSKLCYTVPLKKKKslAILKNLAGAFQPGQATALLGPSGSGKTTLMXVLSN 103
                 3445566469**********876652279***************************999987 PP

  == domain 2    score: 66.8 bits;  conditional E-value: 5.1e-21
   TIGR00958 475 leG.kveFqdVsFsYPsrpdk..pvlkdLtftlepGevvalVGPsGsGKStvaallenlYq..PtgGqvllDgkplkeydhkylhrkvalVgqEPvlfsg.svreNiaYGltktedeevtaaakaanahdFise..lekgydtevgekGs.qlsgGqkqriAiARALvrkPrvLiLDeAtSALDa....eveqllqesksaksrtvlliah 672
                  +G ++ F+d ++s P + ++   +lk+L+ + e+G+++al GPsGsGK t + +l n       +G++l  g+  +    k l+r  + V+q   l +  +vr+ + Y  + +   + t   k+  +++ ++   l+   dt +g + +  +sgGq +r  iA  L+ +P v+ LDe tS LD+    ev ++l e   + +rt++   h
  MMETSP1137-20121227|5036_1 167 SRGlQISFRDLKYSVPLKKKQslTILKNLAGSFEAGKATALLGPSGSGKTTLMDVLSNRKTvgKIEGEILFGGRTPT---KKMLRRLCGYVEQFDTLVGElTVRQMLMYTAELKLTTNFTKKDKELRVQEALETlgLTACADTVIGGTLKrGVSGGQLKRTNIALSLISQPPVIFLDEPTSGLDSfmanEVATVLREL-ARLGRTIVCTIH 373
                 555369**********876652279*******************************986541156899999997654...589**********887776449*********9999**************999861156779****98754169********************************8765555555554.456778777666 PP

>> TIGR00960  3a0501s02: type II secretory pathway family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.0   3.2e-06   0.00016      18      67 ..      70     121 ..      53     141 .. 0.81
   2 !   76.0   0.0   1.4e-23   7.2e-22      16     199 ..     190     376 ..     177     393 .. 0.83

  Alignments for each domain:
  == domain 1    score: 19.3 bits;  conditional E-value: 3.2e-06
   TIGR00960  18 aldnvtvkiekGelvflvGhsGaGkstllklilgiekps..aGkirvsgqdl 67 
                  l+n++   + G+ + l G+sG+Gk+tl+ +++++++    +G+ir+ g   
  MMETSP1137-20121227|5036_1  70 ILKNLAGAFQPGQATALLGPSGSGKTTLMXVLSNRKTVGkiEGEIRFGGRVP 121
                 5999*****************************9988642269999988654 PP

  == domain 2    score: 76.0 bits;  conditional E-value: 1.4e-23
   TIGR00960  16 elaldnvtvkiekGelvflvGhsGaGkstllklilgiekps..aGkirvsgqdltklrdrevpflrrqiGivfqdfkllsdrtvydnvala..lriiGv.kgreieervsaalekvGlkdkaka.....lPvqlsgGeqqrvaiaravvnkPallladePtgnlddelsrdilelleevnraGttvlvathden 199
                 +  l+n++ + e G+ + l G+sG+Gk+tl+ +++++++    +G+i++ g   tk       +lrr  G v q   l+ + tv + ++ +  l++    + ++ e rv++ale++Gl+  a +     l   +sgG+ +r +ia +++++P++++ dePt+ ld+ +++++  +l+e+ r+G t++ + h  +
  MMETSP1137-20121227|5036_1 190 T-ILKNLAGSFEAGKATALLGPSGSGKTTLMDVLSNRKTVGkiEGEILFGGRTPTK------KMLRRLCGYVEQFDTLVGELTVRQMLMYTaeLKLTTNfTKKDKELRVQEALETLGLTACADTviggtLKRGVSGGQLKRTNIALSLISQPPVIFLDEPTSGLDSFMANEVATVLRELARLGRTIVCTIHSPT 376
                 4.799*****************************9988754225888888865554......68**********************998752266655415677888************998752222267889******************************************************999755 PP

>> TIGR02868  CydC: thiol reductant ABC exporter, CydC subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.8   0.1   6.8e-08   3.5e-06     302     382 ..      18     102 ..       3     133 .. 0.69
   2 !   73.8   0.2   4.5e-23   2.3e-21     309     529 ..     147     374 ..     123     375 .. 0.80
   3 ?   -1.7   0.0       3.5   1.8e+02     448     474 ..     419     445 ..     415     448 .. 0.91

  Alignments for each domain:
  == domain 1    score: 23.8 bits;  conditional E-value: 6.8e-08
   TIGR02868 302 aaaeRieevldakvevaeasapaaeaaas.ekptlelrdlsvsypgaee....vlkgvsldlepGervavvGasGaGKstLlalla 382
                 aa +R  +  ++  e++ + +p++ ++++    ++++++l +  p +++    +lk++    +pG+ +a++G+sG+GK+tL+ +l 
  MMETSP1137-20121227|5036_1  18 AAYSRAMNGKNDV-ENGGSRQPKETTTKHsRGLQVTFSKLCYTVPLKKKkslaILKNLAGAFQPGQATALLGPSGSGKTTLMXVLS 102
                 3444444333333.3344444444444333778888888888776433222358999*************************9985 PP

  == domain 2    score: 73.8 bits;  conditional E-value: 4.5e-23
   TIGR02868 309 evldakvevaeasapaaeaaasekptlelrdlsvsypgaee....vlkgvsldlepGervavvGasGaGKstLlalla..glldplkGevtldgvsvaslsesevrrvvsvlaq.daHlFdttvreNlrlarpdatdeellaaLervgLadwlra..LpdGldtklgeggar.lSGGerqRlalARaLladapvllLDEPtehLDaeteeelledLl.aaeegrtvvlvthr 529
                 ev  +  e++ ++ ++  a  s   ++ +rdl++s p +++    +lk++    e+G+ +a++G+sG+GK+tL+ +l   + +   +Ge++  g  +++   + +rr+  +++q d  + + tvr+ l+  ++     + ++  ++ + ++ l+   L   +dt++g++ +r +SGG+ +R  +A  L+++ pv+ LDEPt +LD   ++e+ + L+  a  grt+v   h+
  MMETSP1137-20121227|5036_1 147 EVKVQI-EKGSSTRKESTAKRSRGLQISFRDLKYSVPLKKKqsltILKNLAGSFEAGKATALLGPSGSGKTTLMDVLSnrKTVGKIEGEILFGGRTPTK---KMLRRLCGYVEQfDTLVGELTVRQMLMYTAELKLTTNFTKKDKELRVQEALETlgLTACADTVIGGTLKRgVSGGQLKRTNIALSLISQPPVIFLDEPTSGLDSFMANEVATVLReLARLGRTIVCTIHS 374
                 333333.3333333444444448999*******99874432224689999***************************7324677889*******66665...89**********66677789********9999999999999999999999998557889999**9987655*******************************************9667788888877776 PP

  == domain 3    score: -1.7 bits;  conditional E-value: 3.5
   TIGR02868 448 vgLadwlraLpdGldtklgeggarlSG 474
                 v L +wl +L +G ++ + ++ga  S+
  MMETSP1137-20121227|5036_1 419 VSLPEWLVDLTSGSQSAVMQTGAVYSA 445
                 7899******************99986 PP

>> TIGR03873  F420-0_ABC_ATP: proposed F420-0 ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.8   0.1   4.1e-07   2.1e-05      13      75 ..      67     133 ..      59     155 .. 0.73
   2 !   71.6   0.0   2.4e-22   1.2e-20      10     223 ..     185     402 ..     176     406 .. 0.83

  Alignments for each domain:
  == domain 1    score: 21.8 bits;  conditional E-value: 4.1e-07
   TIGR03873  13 grlivddvdvtaPaGaltgllGPnGsGkstllrllaG..llapdaGevdlagad..lkalsrrarar 75 
                 +  i++++   + +G+ t+llGP GsGk+tl+ +l+    +   +Ge+ ++g    l+  +r + a+
  MMETSP1137-20121227|5036_1  67 SLAILKNLAGAFQPGQATALLGPSGSGKTTLMXVLSNrkTVGKIEGEIRFGGRVptLHPHRRVRLAC 133
                 5678888888999**********************97224556789999988632244333333344 PP

  == domain 2    score: 71.6 bits;  conditional E-value: 2.4e-22
   TIGR03873  10 raggrlivddvdvtaPaGaltgllGPnGsGkstllrllaG..llapdaGevdlagadlkalsrrararrvalveqdsdaevplsvrdvvalGriPhrslfaadsdedaev.vdralarvelssladrdl.....stlsGGerqrvhlaralaqePklllldePtnhldvsaqlellalvrelaaegvtvvvalhdln.laasvcdhvvvldgGrvvaaGppae 223
                 ++++ +i++++  ++ aG+ t+llGP GsGk+tl+ +l+    +   +Ge+ ++g      +++   r    veq  +   +l+vr++++   +  + l +  +++d+e+ v++al + +l++ ad  +       +sGG+ +r+++a +l  +P +++ldePt  ld     e+ +++rela  g t+v ++h  + +a s  d v++l  G  +  Gp  +
  MMETSP1137-20121227|5036_1 185 KKQSLTILKNLAGSFEAGKATALLGPSGSGKTTLMDVLSNrkTVGKIEGEILFGGRT---PTKKMLRRLCGYVEQFDTLVGELTVRQMLMY--TAELKLTTNFTKKDKELrVQEALETLGLTACADTVIggtlkRGVSGGQLKRTNIALSLISQPPVIFLDEPTSGLDSFMANEVATVLRELARLGRTIVCTIHSPTaYAFSCFDAVMMLRDGMTIYEGPQDH 402
                 5677899999999*************************9722455678999999964...444444456789****9999******98665..566667777777888875899***********987632222357*********************************************************9762677777*********9999998766 PP

>> TIGR02211  LolD_lipo_ex: lipoprotein releasing system, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.7   0.0     1e-06   5.2e-05      13      67 ..      63     119 ..      55     136 .. 0.84
   2 !   71.2   0.0   3.6e-22   1.8e-20      13     217 ..     184     392 ..     176     396 .. 0.81

  Alignments for each domain:
  == domain 1    score: 20.7 bits;  conditional E-value: 1e-06
   TIGR02211  13 egkleievlkgvsleiekgelvaivGssGsGkstllhllggldkpt..sGevllkGk 67 
                 ++k+++ +lk++    + g+ +a++G sGsGk+tl+ +l+   +    +Ge+ + G+
  MMETSP1137-20121227|5036_1  63 KKKKSLAILKNLAGAFQPGQATALLGPSGSGKTTLMXVLSNRKTVGkiEGEIRFGGR 119
                 5688999*********************************88775322688888775 PP

  == domain 2    score: 71.2 bits;  conditional E-value: 3.6e-22
   TIGR02211  13 egkleievlkgvsleiekgelvaivGssGsGkstllhllggldkpt..sGevllkGkelsklssneraklrnkklGfiyqfhhlladftalenvamPl...liskkskkeakerakellekvglekrinkkps.....elsGGerqrvaiaralvnkPklvladePtgnldkktakkifelllelnkekntallvvthdlela.kkldrvlelkdg 217
                 ++k+++++lk++  + e+g+ +a++G sGsGk+tl+ +l+   +    +Ge+l+ G++        +  lr +  G++ qf  l+ ++t+ + ++  +   l ++  kk+ + r +e le +gl   ++   +      +sGG+ +r  ia +l+++P +++ dePt+ ld+  a+++ ++l+el +  +t +  +   + +a  ++d v+ l+dg
  MMETSP1137-20121227|5036_1 184 KKKQSLTILKNLAGSFEAGKATALLGPSGSGKTTLMDVLSNRKTVGkiEGEILFGGRT------PTKKMLR-RLCGYVEQFDTLVGELTVRQMLMYTAelkLTTNFTKKDKELRVQEALETLGLTACADTVIGgtlkrGVSGGQLKRTNIALSLISQPPVIFLDEPTSGLDSFMANEVATVLRELARLGRTIVCTIHSPTAYAfSCFDAVMMLRDG 392
                 568899**********************************876543125666666664......4444555.678**************9988887643337889999****************9998876442222268*********************************************9987775544433333332678888888887 PP

>> TIGR03410  urea_trans_UrtE: urea ABC transporter, ATP-binding protein UrtE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   0.1   5.9e-07     3e-05      14     104 ..      69     160 ..      62     178 .. 0.78
   2 !   69.9   0.0     9e-22   4.5e-20      14     218 ..     190     402 ..     180     406 .. 0.85

  Alignments for each domain:
  == domain 1    score: 21.4 bits;  conditional E-value: 5.9e-07
   TIGR03410  14 evlrdvslevekgevvavlGrngvGkttllkalvgllk..vksGeielegeditklkpeervkaGiayv..pqGreifpkltveenlelglealk 104
                  +l+++    + g+ +a+lG  g Gkttl+  l    +  + +Gei++ g  + +l+p++rv+         qGr+ + ++ v+  +e g +++k
  MMETSP1137-20121227|5036_1  69 AILKNLAGAFQPGQATALLGPSGSGKTTLMXVLSNRKTvgKIEGEIRFGG-RVPTLHPHRRVRLACRSLtkTQGRMCVNEVKVQ--IEKGSSTRK 160
                 58999999999********************999865511678***9977.5999*******9888765236899988887765..555555555 PP

  == domain 2    score: 69.9 bits;  conditional E-value: 9e-22
   TIGR03410  14 evlrdvslevekgevvavlGrngvGkttllkalvgllk..vksGeielegeditklkpeervkaGiayvpqGreifpkltveenlelglealkkk......ekkipeeiyelFPvlkemlkRrgGdL....sGGqqqqlaiaRaLvtePklllLDePteGiqPsiikeiekvikelakekdlaillveqvldfaleladrylvlerGevvaegekee 218
                 ++l+++  + e+g+ +a+lG  g Gkttl+  l    +  + +Gei + g+    +++++  ++  +yv q  +++ +ltv+  l+ ++e + ++      ++   +e++e   +     +  gG L    sGGq +   ia +L+++P ++ LDePt G+   + +e+++v++ela+ +   +  +     +a ++ d +++l  G ++ eg +++
  MMETSP1137-20121227|5036_1 190 TILKNLAGSFEAGKATALLGPSGSGKTTLMDVLSNRKTvgKIEGEILFGGR----TPTKKMLRRLCGYVEQFDTLVGELTVRQMLMYTAELKLTTnftkkdKELRVQEALETLGLTACADTVIGGTLkrgvSGGQLKRTNIALSLISQPPVIFLDEPTSGLDSFMANEVATVLRELARLGRTIVCTIHSPTAYAFSCFDAVMMLRDGMTIYEGPQDH 402
                 69999999***********************99876541145677777775....6788899999*****************99887766543332332224445688888888888888999999777779**********************************************9999999999**********************9998876 PP

>> TIGR03375  type_I_sec_LssB: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.1   3.5e-06   0.00018     464     525 ..      49     115 ..      11     130 .. 0.72
   2 !   81.3   0.0   2.1e-25   1.1e-23     450     688 ..     156     403 ..     137     409 .. 0.78

  Alignments for each domain:
  == domain 1    score: 17.7 bits;  conditional E-value: 3.5e-06
   TIGR03375 464 GeielknvsfkYpeeekaa...LknvslkikpGekvaiiGriGsGKstllklllg..lyepteGsvl 525
                  ++ ++++ ++ p ++k++   Lkn+    +pG+  a++G  GsGK+tl+ +l++   +   eG++ 
  MMETSP1137-20121227|5036_1  49 LQVTFSKLCYTVPLKKKKSlaiLKNLAGAFQPGQATALLGPSGSGKTTLMXVLSNrkTVGKIEGEIR 115
                 367788888888777666611256777899*********************9986113445556665 PP

  == domain 2    score: 81.3 bits;  conditional E-value: 2.1e-25
   TIGR03375 450 reeekrllsreklkGeielknvsfkYpeeekaa...LknvslkikpGekvaiiGriGsGKstllklllg..lyepteGsvlldgvdirqidpadlrrnigyvpqdvtLf.yGtlrdNialgap.......aaede..ellraaelaGvtefvkkhpkGldlqiger.GesLSgGQrqavalaRallkdppillLDEPtsalDnsseekllerLkella.dkTlvlvtHrts..lLelvdriivldkGrivadGpkdev 688
                  +++k+   +++   +i++++++++ p ++k++   Lkn+  + ++G   a++G  GsGK+tl+ +l++   +   eG++l+ g   r+  ++ lrr  gyv+q  tL    t+r+ +++ a+       + +d+  ++ +a+e+ G+t+ ++       + ig    +++SgGQ +   +a  l+++pp+++LDEPts lD+   +++ + L+el++ ++T+v + H  +    +  d +++l++G  + +Gp+d++
  MMETSP1137-20121227|5036_1 156 SSTRKESTAKRSRGLQISFRDLKYSVPLKKKQSltiLKNLAGSFEAGKATALLGPSGSGKTTLMDVLSNrkTVGKIEGEILFGG---RTPTKKMLRRLCGYVEQFDTLVgELTVRQMLMYTAElklttnfTKKDKelRVQEALETLGLTACAD-------TVIGGTlKRGVSGGQLKRTNIALSLISQPPVIFLDEPTSGLDSFMANEVATVLRELARlGRTIVCTIHSPTayAFSCFDAVMMLRDGMTIYEGPQDHI 403
                 44555555555666699********988777761125677789************************9722567889****999...5566799**********9999834599**9999988333332222333113456666666665554.......55543214679**********************************************99*********8762257889*****************987 PP

>> TIGR03258  PhnT: 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.0   2.7e-06   0.00014      22      80 ..      69     128 ..      61     137 .. 0.78
   2 !   70.6   0.0     5e-22   2.5e-20      20     223 ..     188     399 ..     177     409 .. 0.82

  Alignments for each domain:
  == domain 1    score: 18.9 bits;  conditional E-value: 2.7e-06
   TIGR03258  22 vvlddlsleieaGellallGksGsGkttllravaGfvkadG...Grllvadrdlthlppykr 80 
                 ++l++l+   ++G+  allG+sGsGkttl+ +++   k+ G   G +  ++r  t l p++r
  MMETSP1137-20121227|5036_1  69 AILKNLAGAFQPGQATALLGPSGSGKTTLMXVLSN-RKTVGkieGEIRFGGRVPT-LHPHRR 128
                 689**************************988765.3444445588888887544.455555 PP

  == domain 2    score: 70.6 bits;  conditional E-value: 5e-22
   TIGR03258  20 arvvlddlsleieaGellallGksGsGkttllravaGfvkadG...GrllvadrdlthlppykrnlallvqnyalfphlkveenvafGlr...arkqskaliaervadalklvqlsdaaa.....rlpaqlsGGqqqrvalaralvvrpdvllldeplsaldaqlrasvveelkalhrelpel..tvlyvthdrde.alvladkillmkeGslialGe 223
                 + ++l++l+   eaG+  allG+sGsGkttl+ +++   k+ G   G +l ++r  t+    +r  + + q  +l   l+v + + +      + + +k + + rv +al +++l+  a       l   +sGGq +r  +a +l+ +p v++ldep s ld+ +     +e++++ rel  l  t+++  h  +  a+   d ++++++G  i  G 
  MMETSP1137-20121227|5036_1 188 SLTILKNLAGSFEAGKATALLGPSGSGKTTLMDVLSNR-KTVGkieGEILFGGRTPTKK-MLRRLCGYVEQFDTLVGELTVRQMLMYTAElklTTNFTKKDKELRVQEALETLGLTACADtviggTLKRGVSGGQLKRTNIALSLISQPPVIFLDEPTSGLDSFMA----NEVATVLRELARLgrTIVCTIHSPTAyAFSCFDAVMMLRDGMTIYEGP 399
                 5689***************************9988764.4555566********99875.568888999999***********999875411234678999999**********9876651112267899********************************8755....5555555555555449****99976439999**********9998875 PP

>> TIGR01978  sufC: FeS assembly ATPase SufC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.5   0.0     8e-09     4e-07      14      72 ..      69     126 ..      59     138 .. 0.87
   2 !   59.8   0.0   1.1e-18   5.4e-17      13     229 ..     189     400 ..     173     410 .. 0.84

  Alignments for each domain:
  == domain 1    score: 27.5 bits;  conditional E-value: 8e-09
   TIGR01978  14 eiLkglnlevkkGevhaimGpnGsGkstLskvlaghekyevtsGeiklkgqdlleleve 72 
                  iLk+l  + ++G+  a++Gp GsGk tL+ vl+ ++++   +Gei++ g+ +  l+++
  MMETSP1137-20121227|5036_1  69 AILKNLAGAFQPGQATALLGPSGSGKTTLMXVLSNRKTVGKIEGEIRFGGR-VPTLHPH 126
                 79**********************************************885.4555555 PP

  == domain 2    score: 59.8 bits;  conditional E-value: 1.1e-18
   TIGR01978  13 keiLkglnlevkkGevhaimGpnGsGkstLskvlaghekyevtsGeiklkgqdlleleveeraraGlflafqapeeipGvsnkeflrsalnavrkargeeeldllefekllkeklellelde...elleRslneGfsGGekkrneilqlallePklaiLDeiDsGlDvDalkivaegvnklreeekalliithyerllelikPdvvhvlldGrivksGdv 229
                  +iLk+l  + ++G+  a++Gp GsGk tL++vl+ ++++   +Gei + g++ ++     r   G +   q  + +  ++++++l  +++ + +++ ++    ++ e  ++e+le+l l++   +++  +l  G sGG  kr++i   ++ +P ++ LDe  sGlD      va+++ +l++  ++++   h          d v++l dG  + +G  
  MMETSP1137-20121227|5036_1 189 LTILKNLAGSFEAGKATALLGPSGSGKTTLMDVLSNRKTVGKIEGEILFGGRTPTKKML--RRLCG-Y-VEQFDTLVGELTVRQMLMYTAELKLTTNFTK----KDKELRVQEALETLGLTAcadTVIGGTLKRGVSGGQLKRTNIALSLISQPPVIFLDEPTSGLDSFMANEVATVLRELARLGRTIVCTIHSPTAYAFSCFDAVMMLRDGMTIYEGPQ 400
                 479************************************************98655333..33333.4.4688889999999999988888777444444....3444455555555555443339999************************************************************************************9999965 PP

>> TIGR01166  cbiO: cobalt ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   0.0   1.3e-06   6.6e-05       6      40 ..      69     103 ..      65     134 .. 0.82
   2 !   68.9   0.3   1.6e-21     8e-20       6     185 ..     190     373 ..     186     376 .. 0.77

  Alignments for each domain:
  == domain 1    score: 20.3 bits;  conditional E-value: 1.3e-06
   TIGR01166   6 evlkglnlavergevlallGanGaGkstlllhlnG 40 
                  +lk+l  a++ g+++allG+ G+Gk+tl+  l+ 
  MMETSP1137-20121227|5036_1  69 AILKNLAGAFQPGQATALLGPSGSGKTTLMXVLSN 103
                 58999999***********************9985 PP

  == domain 2    score: 68.9 bits;  conditional E-value: 1.6e-21
   TIGR01166   6 evlkglnlavergevlallGanGaGkstlllhlnGllrPksGkvlldGeeldysrkgllelrkkvalvlqdpddqlfaadvdedvafgp.lnlG..lseaeverrvrealaavdisgleerpt.....hllsgGekkrvaiagavalrpdvllldePtagldpaGaeqlleilrklreeGktvvisth 185
                  +lk+l  ++e g+++allG+ G+Gk+tl+  l+   r + Gk+  +Ge l  +r    ++ +++   + + d  +   +v + + ++  l l    ++++ e rv+eal++++++  ++  +     + +sgG+ kr+ ia  ++ +p v++ldePt+gld+  a++++++lr+l   G+t+v + h
  MMETSP1137-20121227|5036_1 190 TILKNLAGSFEAGKATALLGPSGSGKTTLMDVLSN--RKTVGKI--EGEILFGGRTPTKKMLRRLCGYVEQFDTLVGELTVRQMLMYTAeLKLTtnFTKKDKELRVQEALETLGLTACADTVIggtlkRGVSGGQLKRTNIALSLISQPPVIFLDEPTSGLDSFMANEVATVLRELARLGRTIVCTIH 373
                 689999999************************96..4455543..45555555555555544444445556777777777777776532333311345556679************99986532222679*****************************************************9988 PP

>> TIGR01189  ccmA: heme ABC exporter, ATP-binding protein CcmA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.0   9.2e-06   0.00047      11      60 ..      66     117 ..      60     134 .. 0.80
   2 !   70.3   0.0   7.4e-22   3.7e-20      10     187 ..     186     375 ..     180     380 .. 0.84

  Alignments for each domain:
  == domain 1    score: 17.7 bits;  conditional E-value: 9.2e-06
   TIGR01189  11 gervlleglsfelaaGealvveGpnGiGKttLLRilaGLlk..pesGeveln 60 
                    ++l++l   +++G+a ++ Gp G+GKttL+ +l+   +    +Ge+++ 
  MMETSP1137-20121227|5036_1  66 KSLAILKNLAGAFQPGQATALLGPSGSGKTTLMXVLSNRKTvgKIEGEIRFG 117
                 567899******************************9754411456666665 PP

  == domain 2    score: 70.3 bits;  conditional E-value: 7.4e-22
   TIGR01189  10 RgervlleglsfelaaGealvveGpnGiGKttLLRilaGLlk..pesGevelndkelaeqrdelaeellylgHldglKaeLsalEnLkfyaallq.......seqktveealekvgLsgledlpv.....aqLsAGqkrRlalarLllskaplWiLDEPttalDkegvellaellaaHlargGivllathqd 187
                 ++  ++l++l  ++ aG+a ++ Gp G+GKttL+ +l+   +    +Ge+ + +++ +++   l++ + y+   d+l +eL+++  L + a+l         ++++ v+eale++gL++++d+++     + +s Gq +R  +a  l+s+ p+  LDEPt  lD    + +a++l++ ++ g +++ + h +
  MMETSP1137-20121227|5036_1 186 KQSLTILKNLAGSFEAGKATALLGPSGSGKTTLMDVLSNRKTvgKIEGEILFGGRTPTKK--MLRRLCGYVEQFDTLVGELTVRQMLMYTAELKLttnftkkDKELRVQEALETLGLTACADTVIggtlkRGVSGGQLKRTNIALSLISQPPVIFLDEPTSGLDSFMANEVATVLRELARLGRTIVCTIHSP 375
                 567899********************************876522678*****97774443..5779*******************9999988755445554334449**************998732222568*******************************************9888888888888876 PP

>> TIGR02769  nickel_nikE: nickel import ATP-binding protein NikE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.1   3.6e-06   0.00018      19      73 ..      63     119 ..      52     155 .. 0.84
   2 !   66.8   0.0   8.6e-21   4.4e-19      18     233 ..     183     398 ..     171     419 .. 0.79

  Alignments for each domain:
  == domain 1    score: 18.9 bits;  conditional E-value: 3.6e-06
   TIGR02769  19 gkkqrkavldnvslsleeGetvallGrsGaGkstlarlllGlekP..akGevsfrGq 73 
                 +kk+  a+l+n+  + + G++ allG sG+Gk+tl  +l   +     +Ge++f G+
  MMETSP1137-20121227|5036_1  63 KKKKSLAILKNLAGAFQPGQATALLGPSGSGKTTLMXVLSNRKTVgkIEGEIRFGGR 119
                 6888999*****************************999876554114688888774 PP

  == domain 2    score: 66.8 bits;  conditional E-value: 8.6e-21
   TIGR02769  18 lgkkqrkavldnvslsleeGetvallGrsGaGkstlarlllGlekPakGevsfrGqdlakldrkqrkafrrdvqlvfqdsisavnprksvreii..gePlrhltsldeserkariaellelvelrs..evl..dklPrqlsGGqlqriniaralavePklivldeavsnldlvlqasilellkklkqefGlaylfithd.lrlvqkfaqrvlvldeGqiveei 233
                 l+kkq  ++l+n+  s e+G++ allG sG+Gk+tl  +l      + G++  +G+ l    + ++k +rr    v q    ++    +vr+++  +  l+  t++ + +++ r++e le+++l +  +++    l r +sGGql+r nia +l  +P +i lde  s ld  +  ++   l++l +  G +++   h     + +  + v++l +G  + e 
  MMETSP1137-20121227|5036_1 183 LKKKQSLTILKNLAGSFEAGKATALLGPSGSGKTTLMDVLSNR--KTVGKI--EGEILFGGRTPTKKMLRRLCGYVEQ--FDTLVGELTVRQMLmyTAELKLTTNFTKKDKELRVQEALETLGLTAcaDTVigGTLKRGVSGGQLKRTNIALSLISQPPVIFLDEPTSGLDSFMANEVATVLRELAR-LGRTIVCTIHSpTAYAFSCFDAVMMLRDGMTIYEG 398
                 6799**********************************99754..444544..3555555556677889999888866..556667778887762245699999********************862222222578999**********************************************65.56666655555144555666888888988877665 PP

>> TIGR03005  ectoine_ehuA: ectoine/hydroxyectoine ABC transporter, ATP-binding protein EhuA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   0.0   1.1e-06   5.5e-05       8      60 ..      63     117 ..      59     140 .. 0.82
   2 !   64.2   0.1   4.2e-20   2.2e-18       8     234 ..     184     403 ..     177     410 .. 0.82

  Alignments for each domain:
  == domain 1    score: 20.3 bits;  conditional E-value: 1.1e-06
   TIGR03005   8 krfgeltvldglelevaaGekvaliGpsGsGkstilrilmtletid..eGsikve 60 
                 k+ ++l +l++l    ++G++ al+GpsGsGk+t++ +l   +t+   eG+i+  
  MMETSP1137-20121227|5036_1  63 KKKKSLAILKNLAGAFQPGQATALLGPSGSGKTTLMXVLSNRKTVGkiEGEIRFG 117
                 5667899********************************8776664225666665 PP

  == domain 2    score: 64.2 bits;  conditional E-value: 4.2e-20
   TIGR03005   8 krfgeltvldglelevaaGekvaliGpsGsGkstilrilmtletideGsikvegeqlyhmkgrkGklvpadekhlrkvrekiGmvfqsfnlfphktvldnvte.apv.lvkGvaraeaekravelldmvGladkadal.....paqlsGGqkqrvaiaralalrpkvllfdevtsaldpelveevlnvlrrlasetdltmllvthemgfarefadrvlffdkGkiveeGkpdei 234
                 k+ ++lt+l++l  + +aG++ al+GpsGsGk+t++ +l   +t+     k+ege+l+  +          +k    +r   G v q   l    tv + ++  a + l+   ++ + e r  e l+ +Gl++ ad++        +sGGq +r  ia +l  +p v+++de+ts ld  + +ev +vlr+la      +  +     +a    d v+++  G  + eG  d+i
  MMETSP1137-20121227|5036_1 184 KKKQSLTILKNLAGSFEAGKATALLGPSGSGKTTLMDVLSNRKTVG----KIEGEILFGGRTP-------TKKM---LRRLCGYVEQFDTLVGELTVRQMLMYtAELkLTTNFTKKDKELRVQEALETLGLTACADTViggtlKRGVSGGQLKRTNIALSLISQPPVIFLDEPTSGLDSFMANEVATVLRELARLGRTIVCTIHSPTAYAFSCFDAVMMLRDGMTIYEGPQDHI 403
                 67789**********************************9877764....6899999865522.......2333...5666788888888888888888765414441466788999999************999975222115679**********************************************987766666666789999999****9999999988877765 PP

>> TIGR03265  PhnT2: putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0   1.7e-05   0.00085      16      66 ..      67     119 ..      59     129 .. 0.73
   2 !   69.2   0.1   1.6e-21   7.9e-20      12     194 ..     184     374 ..     175     402 .. 0.82

  Alignments for each domain:
  == domain 1    score: 16.5 bits;  conditional E-value: 1.7e-05
   TIGR03265  16 aftalkdislsvkkgelvclLGPsGCGkttLLriiaGLek..qdaGaillggr 66 
                 + ++lk++  + + g   +lLGPsG GkttL+ +++   +  + +G+i  ggr
  MMETSP1137-20121227|5036_1  67 SLAILKNLAGAFQPGQATALLGPSGSGKTTLMXVLSNRKTvgKIEGEIRFGGR 119
                 56778888888999999*****************9965541123455655555 PP

  == domain 2    score: 69.2 bits;  conditional E-value: 1.6e-21
   TIGR03265  12 kefeaftalkdislsvkkgelvclLGPsGCGkttLLriiaGLek..qdaGaillggrditrlppqkrdyGivfqsYaLfPnltvaeniayGLk...nkklkreevaerveelLelvglsgseekyPg.....qlsGGqqqrvaLaralalsPglLLLDePlsaLDakvrekLreelkklqrklgvttimvthd 194
                 k+ ++ t+lk++  s ++g   +lLGPsG GkttL+ +++   +  + +G+il ggr  t+    +r  G v q  +L  +ltv++ + y  +   + + ++++ + rv+e+Le++gl+  ++   g      +sGGq +r  +a +l+ +P +++LDeP s LD+ + +++ + l++l  +lg t +   h 
  MMETSP1137-20121227|5036_1 184 KKKQSLTILKNLAGSFEAGKATALLGPSGSGKTTLMDVLSNRKTvgKIEGEILFGGRTPTKK-MLRRLCGYVEQFDTLVGELTVRQMLMYTAElklTTNFTKKDKELRVQEALETLGLTACADTVIGgtlkrGVSGGQLKRTNIALSLISQPPVIFLDEPTSGLDSFMANEVATVLRELA-RLGRTIVCTIHS 374
                 55567899999999**************************9887224579999***998876.56899**********************86521244567899999************988765432222268*******************************************996.688777776665 PP

>> TIGR02203  MsbA_lipidA: lipid A export permease/ATP-binding protein MsbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.0   1.1e-06   5.3e-05     332     380 ..      51     102 ..      30     121 .. 0.72
   2 !   64.7   0.0   2.4e-20   1.2e-18     324     551 ..     163     399 ..     138     404 .. 0.78

  Alignments for each domain:
  == domain 1    score: 19.7 bits;  conditional E-value: 1.1e-06
   TIGR02203 332 vefrnvtfryp...gddrealdsislkveaGevvalvGrsGsGkstlvnllp 380
                 v f ++ ++ p   +++ ++l+++    ++G+ +al G+sGsGk+tl+ +l+
  MMETSP1137-20121227|5036_1  51 VTFSKLCYTVPlkkKKSLAILKNLAGAFQPGQATALLGPSGSGKTTLMXVLS 102
                 6666666665511134556788888899********************9986 PP

  == domain 2    score: 64.7 bits;  conditional E-value: 2.4e-20
   TIGR02203 324 alervrG.kvefrnvtfrypgddr...ealdsislkveaGevvalvGrsGsGkstlvnllp..RFyepdsGeillDgvdladlkLasLRrqvalvsqdvvLF.ddtiaenvaYgeleevdeaeveealaaaylkdlvdkl..peGldtevGengsk.LsGGqRqRlaiaRallkdaPiLiLDeatsaLDneseRlvqaaLerlmk.gRttlviahRLst..iekaDrivvlddGkiverGt 551
                 + +r rG +++fr++++  p +++    +l+++  + eaG+ +al G+sGsGk+tl+++l+  + + + +Geil+ g        + LRr   +v q  +L  + t+ + + Y+++ +++++   +  ++  +++ +++l      dt +G    + +sGGq +R  ia +l+ + P++ LDe ts LD+    +v   L +l + gRt +   h  +       D +++l dG  + +G+
  MMETSP1137-20121227|5036_1 163 TAKRSRGlQISFRDLKYSVPLKKKqslTILKNLAGSFEAGKATALLGPSGSGKTTLMDVLSnrKTVGKIEGEILFGGRTPT---KKMLRRLCGYVEQFDTLVgELTVRQMLMYTAELKLTTN-FTKKDKELRVQEALETLglTACADTVIGGTLKRgVSGGQLKRTNIALSLISQPPVIFLDEPTSGLDSFMANEVATVLRELARlGRTIVCTIHSPTAyaFSCFDAVMMLRDGMTIYEGP 399
                 456788867******9999865551115678888999**********************97435788999*******8755...56788888999996666615699*******99666554.444455666677776651166789***98765549*********************************************98577777777876641145668888888888888876 PP

>> TIGR03771  anch_rpt_ABC: anchored repeat-type ABC transporter, ATP-binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.0   0.00015    0.0077       4      42 ..      79     119 ..      77     129 .. 0.75
   2 !   69.7   0.0   1.2e-21   6.2e-20       4     190 ..     200     393 ..     198     409 .. 0.81

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 0.00015
   TIGR03771   4 dkGellgllGpnGaGkttllrailg..likvakGsvkvagk 42 
                 ++G+  +llGp G+Gkttl+  +     + + +G+++ +g+
  MMETSP1137-20121227|5036_1  79 QPGQATALLGPSGSGKTTLMXVLSNrkTVGKIEGEIRFGGR 119
                 578999**************866541145556677777776 PP

  == domain 2    score: 69.7 bits;  conditional E-value: 1.2e-21
   TIGR03771   4 dkGellgllGpnGaGkttllrailg..likvakGsvkvagkssrkg..rreiGyvpqrhefawdfpidveqtvlsGragliGllrrpkkadfaavadalervklteladrpvGe.....lsGGqrqrvlvaralavkpslllldepftGldlpsqellvelfeelagegtailmtthdl.aeavatcdrvvllngrv 190
                 ++G+  +llGp G+Gkttl+  +     + + +G++  +g++++k   rr  Gyv q   +  +  + v+q+++     ++     +kk+    v++ale+  lt  ad  +G      +sGGq +r  +a +l  +p +++ldep +Gld    ++++ +++ela  g++i+ t h   a a ++ d v++l   +
  MMETSP1137-20121227|5036_1 200 EAGKATALLGPSGSGKTTLMDVLSNrkTVGKIEGEILFGGRTPTKKmlRRLCGYVEQFDTLVGE--LTVRQMLMYTAELKLTT-NFTKKDKELRVQEALETLGLTACADTVIGGtlkrgVSGGQLKRTNIALSLISQPPVIFLDEPTSGLDSFMANEVATVLRELARLGRTIVCTIHSPtAYAFSCFDAVMMLRDGM 393
                 689999**************8775422577789********98876235779*****9998876..67899999765555543.4466777789******************95333447*********************************************************85155777778887775444 PP

>> TIGR02204  MsbA_rel: ABC transporter, permease/ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.0   0.0   1.2e-07     6e-06     326     387 ..      37     102 ..      13     133 .. 0.73
   2 !   59.8   0.0   8.4e-19   4.3e-17     318     534 ..     149     374 ..     136     405 .. 0.76

  Alignments for each domain:
  == domain 1    score: 23.0 bits;  conditional E-value: 1.2e-07
   TIGR02204 326 qpkalpak.vrg.eiefeevkfayParpdq..kaldgldltvrpGetvalvGPsGaGkstllelll 387
                 qpk+ ++k  rg +++f ++ ++ P + ++    l++l  + +pG+  al GPsG+Gk+tl+ +l 
  MMETSP1137-20121227|5036_1  37 QPKETTTKhSRGlQVTFSKLCYTVPLKKKKslAILKNLAGAFQPGQATALLGPSGSGKTTLMXVLS 102
                 4444433313444899*********76643115789999***********************9985 PP

  == domain 2    score: 59.8 bits;  conditional E-value: 8.4e-19
   TIGR02204 318 ksdikaPaqpka..lpakvrg.eiefeevkfayParpdq..kaldgldltvrpGetvalvGPsGaGkstllelll..rfydPqsGailldGvdlreldpeelrerlalvpqdsalf.aasvleniryGrpdasdeeveaaakaaeadefisk..lpeGydtllGergv.tLsGGqkqriaiarailkdapiLLLdeatsaLdaeseqlvqqaleelmk.grttlviahr 534
                 k +i++ ++ ++   +++ rg +i+f ++k++ P + +q  + l++l  + ++G+  al GPsG+Gk+tl+++l   +     +G+il++G   r   ++ lr+    v+q  +l     v++ + y      + + ++  k+ + +e +++  l    dt +G      +sGGq +r  ia +++ + p+++Lde ts Ld+   + v + l el + grt +   h 
  MMETSP1137-20121227|5036_1 149 KVQIEKGSSTRKesTAKRSRGlQISFRDLKYSVPLKKKQslTILKNLAGSFEAGKATALLGPSGSGKTTLMDVLSnrKTVGKIEGEILFGG---RTPTKKMLRRLCGYVEQFDTLVgELTVRQMLMYTAELKLTTNFTKKDKELRVQEALETlgLTACADTVIGGTLKrGVSGGQLKRTNIALSLISQPPVIFLDEPTSGLDSFMANEVATVLRELARlGRTIVCTIHS 374
                 55555555444400445555557***********876552267999999***********************996313456679******9...5677899**********666651668999999998877778888888888888888762257899****97654169*******************************************998736666655564 PP

>> TIGR03740  galliderm_ABC: lantibiotic protection ABC transporter, ATP-binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.0   0.00015    0.0076      10      62 ..      65     119 ..      59     132 .. 0.80
   2 !   67.3   0.0   6.6e-21   3.3e-19      10     206 ..     186     398 ..     179     406 .. 0.80

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 0.00015
   TIGR03740  10 fkkqavvnnvslkvkknsvygllGpnGaGkstllklltG..llrktsGeilldgr 62 
                  k  a+++n++ + +  +  +llGp G+Gk+tl+ +l+    + k +Gei + gr
  MMETSP1137-20121227|5036_1  65 KKSLAILKNLAGAFQPGQATALLGPSGSGKTTLMXVLSNrkTVGKIEGEIRFGGR 119
                 45667888999999999999*****************862256777788877776 PP

  == domain 2    score: 67.3 bits;  conditional E-value: 6.6e-21
   TIGR03740  10 fkkqavvnnvslkvkknsvygllGpnGaGkstllklltG..llrktsGeilldgrewtrkdlkkiGslies.Palyenltare......nlkvrtlllgl.pesrieevlkivdlentekkka.....kqfslGmkqrlGiaiallnkPkllildePtnGldPlGiqelreliksfpekGitvilsshilseve.lladhiGiiseGklkyek 206
                  +  ++++n++ + +  +  +llGp G+Gk+tl+ +l+    + k +Geil+ gr+ t+k+l+ +   +e+  +l ++lt r+      +lk++t   +  +e r++e l++++l+            +  s G  +r  ia++l+ +P ++ ldePt Gld +  +e+  +++ + + G t++ + h  +       d + ++++G+  ye+
  MMETSP1137-20121227|5036_1 186 KQSLTILKNLAGSFEAGKATALLGPSGSGKTTLMDVLSNrkTVGKIEGEILFGGRTPTKKMLRRLCGYVEQfDTLVGELTVRQmlmytaELKLTTNFTKKdKELRVQEALETLGLTACADTVIggtlkRGVSGGQLKRTNIALSLISQPPVIFLDEPTSGLDSFMANEVATVLRELARLGRTIVCTIHSPTAYAfSCFDAVMMLRDGMTIYEG 398
                 455678999999999**********************963378899*****************998888763567888888762111115566666554414679**********987665431111156789999************************************************99997655431567888888888888876 PP

>> TIGR02142  modC_ABC: molybdate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   0.0   0.00011    0.0057      21      54 ..      80     110 ..      64     132 .. 0.74
   2 !   65.3   0.0   2.4e-20   1.2e-18      17     219 ..     196     403 ..     180     417 .. 0.81

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 0.00011
   TIGR02142  21 pgkgvtalFGrsGsGktslirliaGLtrpdegei 54 
                 pg + tal G sGsGkt+l+ +++   +   g+i
  MMETSP1137-20121227|5036_1  80 PG-QATALLGPSGSGKTTLMXVLSNRKTV--GKI 110
                 45.78*****************9965443..332 PP

  == domain 2    score: 65.3 bits;  conditional E-value: 2.4e-20
   TIGR02142  17 dlelpgkgvtalFGrsGsGktslirliaGLtrpdegeivldgevlqdsrkkiilppekRrvgyvFqeArLFpHlsvrenLrYGl.....kraraeerriseekvielLgiehLleR.....lpgkLsGGekqRvaigRAlLssPeLLlmDePLaaLDekrkkeilPyLerlsaelkiPilyvsHsldeva.rladrvvvledGrvkaagkleev 219
                 + + ++   tal G sGsGkt+l+ +++   r + g+i  +ge+l+ +r   +  + +R  gyv q  +L   l+vr+ L Y       ++ + ++++++ ++ +e Lg+    +      l + +sGG  +R  i+  l+s+P ++ +DeP + LD+   +e+   L++l++ l   i+   Hs +  a    d v++l+dG    +g+ +++
  MMETSP1137-20121227|5036_1 196 AGSFEAGKATALLGPSGSGKTTLMDVLS--NRKTVGKI--EGEILFGGRT-PTKKMLRRLCGYVEQFDTLVGELTVRQMLMYTAelkltTNFTKKDKELRVQEALETLGLTACADTviggtLKRGVSGGQLKRTNIALSLISQPPVIFLDEPTSGLDSFMANEVATVLRELAR-LGRTIVCTIHSPTAYAfSCFDAVMMLRDGMTIYEGPQDHI 403
                 455677789******************9..57788876..7*****9998.4556778999*********************8622222455678889999********98766541111145679*********************************************86.666788888999887625779*******998888887766 PP

>> TIGR01187  potA: polyamine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.7   0.0   0.00041     0.021       1      32 [.      86     119 ..      86     132 .. 0.73
   2 !   67.1   0.0     6e-21     3e-19       1     180 [.     207     395 ..     207     410 .. 0.84

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 0.00041
   TIGR01187   1 lLGpsGsGkttlLrllaGleeld..sGkilldge 32 
                 lLGpsGsGkttl+ +l+  +++   +G+i ++g 
  MMETSP1137-20121227|5036_1  86 LLGPSGSGKTTLMXVLSNRKTVGkiEGEIRFGGR 119
                 8***************987776522577777664 PP

  == domain 2    score: 67.1 bits;  conditional E-value: 6e-21
   TIGR01187   1 lLGpsGsGkttlLrllaGleeld..sGkilldgedvtevpaekrsvnvvfqsyaLfPhmtveenvafg..Lkmr.kvpkaeikervkeaLelvqleefakrkp.....sqlsGGqrqrvalaravvkkPkiLLlDeplsaLDkkLrdqmqlelkalqeklGitvvlvthDq.eealtmsdriavlrkGkia 180
                 lLGpsGsGkttl+ +l+  +++   +G+il++g   t+    +r  + v q   L   +tv + + +   Lk+  +  k++ + rv+eaLe+  l+  a+  +       +sGGq +r  +a +++ +P +++lDep s LD  + +++ + l++l  +lG t+v   h     a++  d + +lr+G  +
  MMETSP1137-20121227|5036_1 207 LLGPSGSGKTTLMDVLSNRKTVGkiEGEILFGGRTPTKK-MLRRLCGYVEQFDTLVGELTVRQMLMYTaeLKLTtNFTKKDKELRVQEALETLGLTACADTVIggtlkRGVSGGQLKRTNIALSLISQPPVIFLDEPTSGLDSFMANEVATVLRELA-RLGRTIVCTIHSPtAYAFSCFDAVMMLRDGMTI 395
                 8****************999986337*******988875.57899**********************73356542457788889*************99987633222579********************************99999999999986.6*******9998515689999999999999644 PP

>> TIGR01842  type_I_sec_PrtD: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.0   1.1e-06   5.7e-05     320     377 ..      54     116 ..      37     120 .. 0.75
   2 !   57.3   0.0   4.5e-18   2.3e-16     324     540 ..     179     403 ..     157     406 .. 0.81

  Alignments for each domain:
  == domain 1    score: 19.6 bits;  conditional E-value: 1.1e-06
   TIGR01842 320 envslvppeekk...ktlkgisfalkaGealaiiGpsgsGkssLarllvGvwl..pasGsvrl 377
                 +++ ++ p +kk    +lk++  a ++G+a a++GpsgsGk++L+ +l    +  + +G++r+
  MMETSP1137-20121227|5036_1  54 SKLCYTVPLKKKkslAILKNLAGAFQPGQATALLGPSGSGKTTLMXVLSNRKTvgKIEGEIRF 116
                 555555565555455799**************************9998654331145566665 PP

  == domain 2    score: 57.3 bits;  conditional E-value: 4.5e-18
   TIGR01842 324 lvppeekk...ktlkgisfalkaGealaiiGpsgsGkssLarllvGvwl..pasGsvrlDgadlkqwdretlGksiGYlPqdveLf.eGtvaeniaRfeenadaekvieaaklagvheli..lrlpkGYdteigeg.GaaLsgGqrqRiaLaRalygdPklvvLDePnanLDeeGeqalakalkelkarkitvvvithrpsl..lelvdkilvlkdGalkafGereev 540
                 +  p +kk   ++lk++  + +aG+a a++GpsgsGk++L+ +l    +  + +G++ + g   +   ++ l +  GY+ q   L+ e tv + +    e   + +  +  k   v e +  l l    dt+ig +   ++sgGq +R  +a  l  +P ++ LDeP + LD+     +a+ l el + ++t+v   h p++   ++ d +++l+dG     G ++++
  MMETSP1137-20121227|5036_1 179 YSVPLKKKqslTILKNLAGSFEAGKATALLGPSGSGKTTLMDVLSNRKTvgKIEGEILFGG---RTPTKKMLRRLCGYVEQFDTLVgELTVRQMLMYTAELKLTTNFTKKDKELRVQEALetLGLTACADTVIGGTlKRGVSGGQLKRTNIALSLISQPPVIFLDEPTSGLDSFMANEVATVLRELARLGRTIVCTIHSPTAyaFSCFDAVMMLRDGMTIYEGPQDHI 403
                 44554444355899****************************9976433114566666666...45567899999****9965555256999998888776667778888888888887623678999*****8662678******************************************************9999987522789**********99888888776 PP

>> TIGR03411  urea_trans_UrtD: urea ABC transporter, ATP-binding protein UrtD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0     2e-05     0.001      17      64 ..      70     119 ..      63     150 .. 0.77
   2 !   61.6   0.0   3.7e-19   1.9e-17      15     229 ..     189     403 ..     182     409 .. 0.81

  Alignments for each domain:
  == domain 1    score: 16.6 bits;  conditional E-value: 2e-05
   TIGR03411  17 alndlslsveegelrviiGpnGaGkttllDvitGktr..pdeGsvlfkgk 64 
                  l++l+ + ++g+  +++Gp G+Gkttl+ v++ +      eG++ f g+
  MMETSP1137-20121227|5036_1  70 ILKNLAGAFQPGQATALLGPSGSGKTTLMXVLSNRKTvgKIEGEIRFGGR 119
                 5788888999**********************986541144788888876 PP

  == domain 2    score: 61.6 bits;  conditional E-value: 3.7e-19
   TIGR03411  15 fkalndlslsveegelrviiGpnGaGkttllDvitGktr..pdeGsvlfkgkdltklkeaeiarlGigRkfqkpsvfeeltvlenlelalkadksvlallfarlskeekerieevleligLeekadkkag.lL....shGqkqwLeigmllvqepkllllDePvaGmtdeetektaellkelak.ersvvv.vehDmefvrelaekvtvlheGkvlaeGsldev 229
                 ++ l++l+ s e+g+  +++Gp G+Gkttl+Dv++ +      eG++lf g+     +++++ r   g   q  ++  eltv++ l+ +++   ++++++   ++k+++ r++e+le++gL++ ad+  g +L    s Gq ++ +i++ l+ +p +++lDeP++G+ +   +++a +l+ela+  r++v  +     +  +  + v +l +G ++ eG  d++
  MMETSP1137-20121227|5036_1 189 LTILKNLAGSFEAGKATALLGPSGSGKTTLMDVLSNRKTvgKIEGEILFGGRT----PTKKMLRRLCGYVEQFDTLVGELTVRQMLMYTAE--LKLTTNF---TKKDKELRVQEALETLGLTACADTVIGgTLkrgvSGGQLKRTNIALSLISQPPVIFLDEPTSGLDSFMANEVATVLRELARlGRTIVCtIHSPTAYAFSCFDAVMMLRDGMTIYEGPQDHI 403
                 5668888899999*********************9875411457999999975....4555666666777788899********8876654..4445555...5678889*************99986542543333889******************************************98445665514455788899999**************98887 PP

>> TIGR02633  xylG: D-xylose ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.6   0.0   2.7e-07   1.4e-05      10      64 ..      64     118 ..      59     128 .. 0.91
   2 !   54.4   0.0   3.1e-17   1.6e-15       9     220 ..     184     395 ..     177     403 .. 0.85

  Alignments for each domain:
  == domain 1    score: 21.6 bits;  conditional E-value: 2.7e-07
   TIGR02633  10 kfggvkaldnidlklraGeivslcGenGaGkstlmkvlsgvyphGtydGeilfeg 64 
                 k  ++  l+n++   ++G+  +l G  G+Gk+tlm vls     G+ +Gei f g
  MMETSP1137-20121227|5036_1  64 KKKSLAILKNLAGAFQPGQATALLGPSGSGKTTLMXVLSNRKTVGKIEGEIRFGG 118
                 55677789999999**************************************987 PP

  == domain 2    score: 54.4 bits;  conditional E-value: 3.1e-17
   TIGR02633   9 kkfggvkaldnidlklraGeivslcGenGaGkstlmkvlsgvyphGtydGeilfegeelkassirdterkGiviihqeltlvkelsvleniflGneitlkGglmdydamvlrakellrelkldasnvtrpvsdl....GlGqqqlveiakalnkqvrllildepsaslteketeilldiirdlkakgvacvyishkleevk.avsdtisvirdGqhv 220
                 kk ++++ l+n++   +aG+  +l G  G+Gk+tlm vls     G+ +Geilf g+    + +r         + q  tlv el+v + ++   e+ l    + ++   lr++e l+ l l a  +t   + l     +Gq +  +ia +l  q  ++ ldep++ l     + +  ++r+l + g + v   h     + +  d + ++rdG  +
  MMETSP1137-20121227|5036_1 184 KKKQSLTILKNLAGSFEAGKATALLGPSGSGKTTLMDVLSNRKTVGKIEGEILFGGRTPTKKMLRR----LCGYVEQFDTLVGELTVRQMLMYTAELKLTTNFT-KKDKELRVQEALETLGLTACADTVIGGTLkrgvSGGQLKRTNIALSLISQPPVIFLDEPTSGLDSFMANEVATVLRELARLGRTIVCTIHSPTAYAfSCFDAVMMLRDGMTI 395
                 677889999***********************************************9888777764....456789***********************99555.5566899*************999855544221156788889*************************9999********998877776666655544155699999***9876 PP

>> TIGR02324  CP_lyasePhnL: phosphonate C-P lyase system protein PhnL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0   4.7e-05    0.0024      16      55 ..      63     102 ..      49     126 .. 0.83
   2 !   61.5   0.0   3.3e-19   1.7e-17      11     209 ..     181     375 ..     171     388 .. 0.81

  Alignments for each domain:
  == domain 1    score: 15.2 bits;  conditional E-value: 4.7e-05
   TIGR02324  16 qgGvklpvlkevsleveaGelvalsGksGaGkstllksly 55 
                 ++ ++l +lk++  + + G+ +al G+sG+Gk tl+ +l 
  MMETSP1137-20121227|5036_1  63 KKKKSLAILKNLAGAFQPGQATALLGPSGSGKTTLMXVLS 102
                 45578999999999*********************98874 PP

  == domain 2    score: 61.5 bits;  conditional E-value: 3.3e-19
   TIGR02324  11 filhqqgGvklpvlkevsleveaGelvalsGksGaGkstllkslyanYlpesgrilvrhegeivdlvkaserevlevRrktigyvsqfLrviPRvsalevvaepl...lelGvereearakakellarlniperLWslaPatf....sGGekqRvniaraliadrPiLLLdePtasLdaanrkvvvelikeakargaaligifhde 209
                   l ++   +l +lk++  + eaG+ +al G+sG+Gk tl+ +l +       + + + egei+   +   +++l  R +  gyv qf   +  ++ +++++ ++   l++ ++++  + +++e+l+ l ++    ++   t     sGG  +R nia +li++ P++ LdePt+ Ld+   + v  +++e+ + g +++  +h  
  MMETSP1137-20121227|5036_1 181 VPLKKK--QSLTILKNLAGSFEAGKATALLGPSGSGKTTLMDVLSNR------KTVGKIEGEILFGGRTPTKKML--R-RLCGYVEQFDTLVGELTVRQMLMYTAelkLTTNFTKKDKELRVQEALETLGLTACADTVIGGTLkrgvSGGQLKRTNIALSLISQPPVIFLDEPTSGLDSFMANEVATVLRELARLGRTIVCTIHSP 375
                 555555..478999***************************988543......3344568999944444455554..4.689***************99987554212567788888999*********999887777766643333*******************************************************9975 PP

>> TIGR02770  nickel_nikD: nickel import ATP-binding protein NikD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.2   0.0   0.00037     0.019       8      53 ..      77     120 ..      70     153 .. 0.78
   2 !   62.3   0.0   1.7e-19   8.9e-18       8     210 ..     198     400 ..     191     408 .. 0.77

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 0.00037
   TIGR02770   8 slkrgkvlalvGesGsGksltalailglldkeltktsGeilldgke 53 
                   + g+ +al+G sGsGk++  + +l   +  + k +Gei++ g+ 
  MMETSP1137-20121227|5036_1  77 AFQPGQATALLGPSGSGKTTL-MXVLSNRK-TVGKIEGEIRFGGRV 120
                 56889*************865.45555443.688999***999985 PP

  == domain 2    score: 62.3 bits;  conditional E-value: 1.7e-19
   TIGR02770   8 slkrgkvlalvGesGsGksltalailglldkeltktsGeilldgkelaalalrgreialilqnPrsafnPlltikeqllet..lkalekls.kqakelivealeavgLeeaee.vl.kkypfelsGGmlqRvmialallleaplliaDePttdlDvvvqaevLklleelrekrglgillithDlgvvaeladevavmekGkivergtv 210
                 s   gk +al+G sGsGk++  + +l    k + k +Geil+ g+  ++  lr r ++++ q   +++   lt+++ l+ t  lk +++++ k+ + ++ eale  gL+  +  v+  +    +sGG l+R  ial+l++++p+++ DePt+ lD  ++ ev   l+el +   + +  i    +    + d v+++++G  + +g+ 
  MMETSP1137-20121227|5036_1 198 SFEAGKATALLGPSGSGKTTL-MDVLSNR-KTVGKIEGEILFGGRTPTKKMLR-RLCGYVEQ--FDTLVGELTVRQMLMYTaeLKLTTNFTkKDKELRVQEALETLGLTACADtVIgGTLKRGVSGGQLKRTNIALSLISQPPVIFLDEPTSGLDSFMANEVATVLRELARLGRTIVCTIHSPTAYAFSCFDAVMMLRDGMTIYEGPQ 400
                 67889*************864.4444433.367899********998877766.67888877..6777788888888887722455566663444556889*******987651552467788**********************************************987665555555555556689999999999988877765 PP

>> TIGR03522  GldA_ABC_ATP: gliding motility-associated ABC transporter ATP-binding subunit GldA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.2   0.1   0.00038     0.019      17      49 ..      70     102 ..      61     110 .. 0.87
   2 !   62.2   0.0   2.3e-19   1.2e-17      18     206 ..     192     390 ..     181     409 .. 0.78

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 0.00038
   TIGR03522  17 aldevsfeaekGeivGflGPnGaGkstlmkilt 49 
                 +l++++ + ++G+ + +lGP G+Gk+tlm +l+
  MMETSP1137-20121227|5036_1  70 ILKNLAGAFQPGQATALLGPSGSGKTTLMXVLS 102
                 5667777899*******************9986 PP

  == domain 2    score: 62.2 bits;  conditional E-value: 2.3e-19
   TIGR03522  18 ldevsfeaekGeivGflGPnGaGkstlmkiltgy..lkadsGsvavagedvlknslevrkniGylPehnPlyldlyvreylefsaalyklkg...rklkkrveelielvGlkaeqhkkiga.....lskGyrqrvGlakallhdPkvlildePttGldPnqlveirevikeiak.dktvilsthimqevealc.drviiin 206
                 l++++ + e G+ + +lGP G+Gk+tlm +l+    +    G +   g   +   +  r+  Gy+ + + l  +l vr+ l ++a+l   ++   + ++ rv+e +e  Gl+a +   ig      +s G  +r  +a +l+ +P v+ ldePt+Gld     e+  v++e+a+  +t++ + h        c d v+++ 
  MMETSP1137-20121227|5036_1 192 LKNLAGSFEAGKATALLGPSGSGKTTLMDVLSNRktVGKIEGEILFGGRTPT--KKMLRRLCGYVEQFDTLVGELTVRQMLMYTAELKLTTNftkKDKELRVQEALETLGLTACADTVIGGtlkrgVSGGQLKRTNIALSLISQPPVIFLDEPTSGLDSFMANEVATVLRELARlGRTIVCTIHSPTAYAFSCfDAVMMLR 390
                 566666778999*******************975114455677777776555..46689***************************975554110455569***************99974322236778889***************************************98457888887865555544434455555 PP

>> TIGR01288  nodI: nodulation ABC transporter NodI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   0.0      0.04         2      19      51 ..      70     102 ..      62     136 .. 0.79
   2 !   69.0   0.1   1.4e-21   7.1e-20      19     220 ..     191     401 ..     181     415 .. 0.81

  Alignments for each domain:
  == domain 1    score: 5.2 bits;  conditional E-value: 0.04
   TIGR01288  19 vvndlsftiaagecfgllgpngagkstiarlvl 51 
                 ++++l+ +   g+   llgp g+gk+t+  ++ 
  MMETSP1137-20121227|5036_1  70 ILKNLAGAFQPGQATALLGPSGSGKTTLMXVLS 102
                 667888888999***************987664 PP

  == domain 2    score: 69.0 bits;  conditional E-value: 1.4e-21
   TIGR01288  19 vvndlsftiaagecfgllgpngagkstiarlvlglispdegki...tvlgepvpararlarakigvvpqfdnldreftvrenllvfgryfglst....reieevipsllefarleskadvrva.....dlsggmkrrltlaralindpqllildepttgldpharhliwerlrsllargktilltthlmeeaerlc.drlcvleagrkiaegrpd 220
                 ++++l+ +  ag+   llgp g+gk+t+  ++    +  +gki    ++g + p++    r   g v qfd+l  e+tvr+  l++   ++l+t    ++ e  +   le   l + ad+ +       +sgg  +r  +a +li +p ++ ldept+gld      +   lr l  +g+ti+ t h        c d + +l  g+ i eg  d
  MMETSP1137-20121227|5036_1 191 ILKNLAGSFEAGKATALLGPSGSGKTTLMDVLSNRKT--VGKIegeILFGGRTPTKKM-LRRLCGYVEQFDTLVGELTVRQM-LMYTAELKLTTnftkKDKELRVQEALETLGLTACADTVIGgtlkrGVSGGQLKRTNIALSLISQPPVIFLDEPTSGLDSFMANEVATVLRELARLGRTIVCTIHSPTAYAFSCfDAVMMLRDGMTIYEGPQD 401
                 7788999999******************998876543..4444221256788888865.56679****************85.5677777776522225778899**************988532222589********************************************************977655555499999********99654 PP

>> TIGR03796  NHLM_micro_ABC1: NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.0     3e-06   0.00015     492     544 ..      68     122 ..      24     138 .. 0.76
   2 !   54.9   0.0     2e-17     1e-15     458     693 ..     152     398 ..     134     406 .. 0.73

  Alignments for each domain:
  == domain 1    score: 17.9 bits;  conditional E-value: 3e-06
   TIGR03796 492 apliedfslslkpGqrvAlvGgsGsGkstiaklvaG..lyepwsGeilfDgkpre 544
                  ++++++    +pGq  Al G+sGsGk t+  +++      + +Gei+f g+  +
  MMETSP1137-20121227|5036_1  68 LAILKNLAGAFQPGQATALLGPSGSGKTTLMXVLSNrkTVGKIEGEIRFGGRVPT 122
                 4678999999************************972245578999999887655 PP

  == domain 2    score: 54.9 bits;  conditional E-value: 2e-17
   TIGR03796 458 leeeeekaaeseekekLsG.kvelrnvtfgysalea...pliedfslslkpGqrvAlvGgsGsGkstiaklvaG..lyepwsGeilfDgkpreeiprevlanslalvdq.divlfegtvrdnltlwdetipeedlvrAakDAaihdvilarpggyea.elaegg..anlsGGqrqRleiARaLvknPsiLilDEatsaLDaetEkaid...enlrrRgctciivaHRLst..iRdcdeiivlerGkvverG 693
                  e+  +++ +++++++ +G ++ +r+++++    ++    +++++  s + G+  Al G+sGsGk t+  +++      + +Geilf g++    ++++l+    +v+q d ++ e tvr+ l    e   ++++++  k+  +++++ ++     a +++ g   + +sGGq +R +iA +L+++P ++ lDE ts LD+   +++    ++l r g t++   H   +      d +++l  G  +  G
  MMETSP1137-20121227|5036_1 152 IEK-GSSTRKESTAKRSRGlQISFRDLKYSVPLKKKqslTILKNLAGSFEAGKATALLGPSGSGKTTLMDVLSNrkTVGKIEGEILFGGRTP---TKKMLRRLCGYVEQfDTLVGELTVRQMLMYTAELKLTTNFTKKDKELRVQEALETLGLTACAdTVIGGTlkRGVSGGQLKRTNIALSLISQPPVIFLDEPTSGLDSFMANEVAtvlRELARLGRTIVCTIHSPTAyaFSCFDAVMMLRDGMTIYEG 398
                 333.23333344446777756999****998544431126899*****************************9822456899*******875...56788888999**966777789999988666666668999999*********9998765544055555444679*******************************988776650115566778888777775443103334666666666666555 PP

>> TIGR03797  NHLM_micro_ABC2: NHLM bacteriocin system ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.0   4.6e-06   0.00023     463     499 ..      65     101 ..      49     119 .. 0.89
   2 !   55.1   0.0     2e-17     1e-15     463     643 ..     186     373 ..     169     409 .. 0.75

  Alignments for each domain:
  == domain 1    score: 17.6 bits;  conditional E-value: 4.6e-06
   TIGR03797 463 kdgplvLddvslkiepGefvaivGaSGsGKStllrlL 499
                 k + ++L++++   +pG+  a+ G+SGsGK tl+ +L
  MMETSP1137-20121227|5036_1  65 KKSLAILKNLAGAFQPGQATALLGPSGSGKTTLMXVL 101
                 66789*****************************988 PP

  == domain 2    score: 55.1 bits;  conditional E-value: 2e-17
   TIGR03797 463 kdgplvLddvslkiepGefvaivGaSGsGKStllrlLLgFekPe..sGsvlyDGqdlekldvqavRrqlGvVLQngrllsg.sileniaggasltldeaw.eaarmagleeDikamPmg..lhTviseg.ggtlSGGQrQRlliAralvrkPrillfDEATSALDNrtQaiVs...esleklkvtRiviAH 643
                 k++ ++L++++ + e+G+  a+ G+SGsGK tl+ +L    +    +G++l+ G+  +   ++ +Rr +G V Q   l+ + ++ + ++ +a+l l   + +  ++  ++e ++++ +     Tvi      ++SGGQ +R  iA +l+++P ++++DE TS LD  + + V      l++l  t +   H
  MMETSP1137-20121227|5036_1 186 KQSLTILKNLAGSFEAGKATALLGPSGSGKTTLMDVLSNRKTVGkiEGEILFGGRTPT---KKMLRRLCGYVEQFDTLVGElTVRQMLMYTAELKLTTNFtKKDKELRVQEALETLGLTacADTVIGGTlKRGVSGGQLKRTNIALSLISQPPVIFLDEPTSGLDSFMANEVAtvlRELARLGRTIVCTIH 373
                 67789********************************9998865236*******9754...699**********99888772566667777777666554145677889999999877522579995442468********************************98876555000555556555555555 PP

>> TIGR01277  thiQ: thiamine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.2   0.0   0.00085     0.043      22      56 ..      79     115 ..      63     130 .. 0.74
   2 !   57.9   0.0   4.3e-18   2.2e-16      20     205 ..     198     392 ..     183     398 .. 0.81

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 0.00085
   TIGR01277  22 eaGervailGesGaGkstllnliaGfle..pasGeik 56 
                 + G+  a+lG+sG+Gk+tl+ +++   +   ++Gei+
  MMETSP1137-20121227|5036_1  79 QPGQATALLGPSGSGKTTLMXVLSNRKTvgKIEGEIR 115
                 67999***************99876543114556665 PP

  == domain 2    score: 57.9 bits;  conditional E-value: 4.3e-18
   TIGR01277  20 sveaGervailGesGaGkstllnliaGfle..pasGeikvndkdhtrsapyerpvsmlfqennlfahltvrqniglGlkpglklnavqkek...vedvarqvGiadyle.....rlpeelsGGqrqrvalarclvrekpillldepfsaldpklreemlalvkkladekkltlllvthslsd.aaaiasqvvvvedG 205
                 s eaG+  a+lG+sG+Gk+tl+++++   +   ++Gei   ++  t+    +r    + q + l   ltvrq +    +  l  n  +k+k   v+++ + +G++   +      l   +sGGq +r  +a  l+ + p+++ldep s ld  + +e+ +++++la    +t++   hs+   a +  + v+++ dG
  MMETSP1137-20121227|5036_1 198 SFEAGKATALLGPSGSGKTTLMDVLSNRKTvgKIEGEILFGGRTPTKK-MLRRLCGYVEQFDTLVGELTVRQMLMYTAELKLTTNFTKKDKelrVQEALETLGLTACADtviggTLKRGVSGGQLKRTNIALSLISQPPVIFLDEPTSGLDSFMANEVATVLRELAR-LGRTIVCTIHSPTAyAFSCFDAVMMLRDG 392
                 5789*********************9876522689***9999988765.5899999****************998876666666655555433388888999*98777622222477889**************************************999999986.56888888898876155667788888887 PP

>> TIGR01186  proV: glycine betaine/L-proline transport ATP binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.1   0.0    0.0027      0.14      16      41 ..      78     104 ..      64     120 .. 0.79
   2 !   57.4   0.0   5.6e-18   2.9e-16      16     216 ..     199     402 ..     185     405 .. 0.80

  Alignments for each domain:
  == domain 1    score: 9.1 bits;  conditional E-value: 0.0027
   TIGR01186  16 ieeGeiiviiGlsGsGkstlvrll.nr 41 
                  + G+   ++G+sGsGk+tl+ +l nr
  MMETSP1137-20121227|5036_1  78 FQPGQATALLGPSGSGKTTLMXVLsNR 104
                 56788899*************988344 PP

  == domain 2    score: 57.4 bits;  conditional E-value: 5.6e-18
   TIGR01186  16 ieeGeiiviiGlsGsGkstlvrll.nr.liePtaGkilidGediaeisdaelrevrrkkiamviqkialfPhmtildnislglell...kideqerkekalealklvdleeyedr.....yPdelsGGmqqrvGlaralaaePdlllmdeafsaldPlirdelqdelvklqkklqktivfithd.ldealrlgdrivilkaGeivqvGtPde 216
                  e G    ++G+sGsGk+tl+ +l nr  +   +G+il  G + ++   + l    r+  ++v q  +l+   t+ + + ++ el+   ++ +++++ + +eal  ++l   +d+         +sGG+ +r  +a +l  +P+++++de+ s ld ++ +e+   l +l  +l +tiv   h     a+   d +++l++G  +  G  d+
  MMETSP1137-20121227|5036_1 199 FEAGKATALLGPSGSGKTTLMDVLsNRkTVGKIEGEILFGGRTPTK---KML----RRLCGYVEQFDTLVGELTVRQMLMYTAELKlttNFTKKDKELRVQEALETLGLTACADTviggtLKRGVSGGQLKRTNIALSLISQPPVIFLDEPTSGLDSFMANEVATVLRELA-RLGRTIVCTIHSpTAYAFSCFDAVMMLRDGMTIYEGPQDH 402
                 67899999*************9985552466677888877776543...344....899**********************99986222344455555667888888887777752111156789********************************************96.699****988873678999999999999998887776665 PP

>> TIGR01193  bacteriocin_ABC: ABC-type bacteriocin transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.5   0.0   0.00016    0.0079     460     523 ..      37     104 ..      14     123 .. 0.73
   2 !   53.1   0.0   8.5e-17   4.3e-15     448     692 ..     145     400 ..     136     406 .. 0.76

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 0.00016
   TIGR01193 460 ekkkltelenlngdievndvsysyGygse....vledislkikknekitlvGlsGsGkstlakllvkf 523
                 + k++t++++   +++++++ y   + ++    +l+++    +  + ++l+G sGsGk+tl+ +l + 
  MMETSP1137-20121227|5036_1  37 QPKETTTKHSRGLQVTFSKLCYTVPLKKKkslaILKNLAGAFQPGQATALLGPSGSGKTTLMXVLSNR 104
                 344455555666678888888888776644444999**************************999874 PP

  == domain 2    score: 53.1 bits;  conditional E-value: 8.5e-17
   TIGR01193 448 lnevyl.vdsefkekkkltelenlngdievndvsysyGygse....vledislkikknekitlvGlsGsGkstlakllvkff..qaesGeillngkslkdidkhelrqlinylPq.ePfifsGsilenlllgakenvsqeeikkaveiaeikddieklpl..Gyqtelsee.assisgGqkqrlalarallsdskvlildestsnldlltekkivenllklk..dktiifvahrlsva..kksdkiivldeGkiieqGsh 692
                 +nev + ++   +++k+ t++ +   +i++ d++ys  + ++    +l+++  + ++ + ++l+G sGsGk+tl+ +l +     + +Geil++g +     k++lr+l  y+ q + ++ + ++ + l+  a+ +++++  kk  e+  +++ +e l l    +t +       +sgGq +r  +a +l+s+  v+ lde ts ld  + + +   l +l    +ti+   h  +    +  d +++l +G  i +G  
  MMETSP1137-20121227|5036_1 145 VNEVKVqIEKGSSTRKESTAKRSRGLQISFRDLKYSVPLKKKqsltILKNLAGSFEAGKATALLGPSGSGKTTLMDVLSNRKtvGKIEGEILFGGRT---PTKKMLRRLCGYVEQfDTLVGELTVRQMLMYTAELKLTTNFTKKDKEL-RVQEALETLGLtaCADTVIGGTlKRGVSGGQLKRTNIALSLISQPPVIFLDEPTSGLDSFMANEVATVLRELArlGRTIVCTIHSPTAYafSCFDAVMMLRDGMTIYEGPQ 400
                 5777542455556667778888888899*******999876444449*******************************98653377899***99976...4689***********455566677777788888888888877777665.67888888766115677776442568********************************99988765555444311789999888765431145578888888877777755 PP

>> TIGR01846  type_I_sec_HlyB: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.1   0.0   0.00019    0.0094     466     503 ..      64     101 ..      31     110 .. 0.78
   2 !   48.7   0.0   1.5e-15   7.5e-14     454     676 ..     170     401 ..     140     406 .. 0.76

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 0.00019
   TIGR01846 466 kedspevlsnlsldikaGeviGivGpsGsGkstltkll 503
                 k+ s  +l+nl+   ++G+   + GpsGsGk+tl  +l
  MMETSP1137-20121227|5036_1  64 KKKSLAILKNLAGAFQPGQATALLGPSGSGKTTLMXVL 101
                 567789***************************98776 PP

  == domain 2    score: 48.7 bits;  conditional E-value: 1.5e-15
   TIGR01846 454 Gaiefenirfry...kedspevlsnlsldikaGeviGivGpsGsGkstltkllq.rlyvPe.kGrvlvdgvdlaladPawlrrqvgvvlqenvlf.srsirdnialakP.aiseekviaaakl..aGahdfiselkqGyetevgek.GaalsGGqrqrialaralvanPrilildeatsaldyeseavimrnlreick.grtviiiahrlst..vraadrilvlekGkivesGkhe 676
                  +i+f+++++     k++s ++l+nl+ + +aG+   + GpsGsGk+tl  +l  r  v + +G++l  g   +    ++lrr  g v q + l+ + ++r+ ++ +   ++ ++   +  +l    a +    l    +t +g      +sGGq +r  +a +l+++P ++ lde ts ld    + +   lre+++ grt+++  h  ++      d +++l +G  + +G  +
  MMETSP1137-20121227|5036_1 170 LQISFRDLKYSVplkKKQSLTILKNLAGSFEAGKATALLGPSGSGKTTLMDVLSnRKTVGKiEGEILFGGRTPT---KKMLRRLCGYVEQFDTLVgELTVRQMLMYTAElKLTTNFTKKDKELrvQEALE-TLGLTACADTVIGGTlKRGVSGGQLKRTNIALSLISQPPVIFLDEPTSGLDSFMANEVATVLRELARlGRTIVCTIHSPTAyaFSCFDAVMMLRDGMTIYEGPQD 401
                 468888888764332678889****************************9988615555444799**9998654...579**********7777625577877665443133333333333340044444.34688999999986525679*********************************9999*******99889********8765115566999*****9998888665 PP

>> TIGR02314  ABC_MetN: D-methionine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   0.0     0.034       1.7      14      50 ..      64     100 ..      53     115 .. 0.86
   2 !   53.3   0.0   9.2e-17   4.6e-15      15     239 ..     186     414 ..     178     424 .. 0.84

  Alignments for each domain:
  == domain 1    score: 5.3 bits;  conditional E-value: 0.034
   TIGR02314  14 gdkkikaldnvslfvpkgqifgvigasgagkstlirc 50 
                  +k +  l+n++     gq   ++g sg+gk+tl+  
  MMETSP1137-20121227|5036_1  64 KKKSLAILKNLAGAFQPGQATALLGPSGSGKTTLMXV 100
                 5788999*****99999*****************875 PP

  == domain 2    score: 53.3 bits;  conditional E-value: 9.2e-17
   TIGR02314  15 dkkikaldnvslfvpkgqifgvigasgagkstlircvnllekptsgavivdgkdlttlsnaelvkarrqigmifqhfnllssrtvfgnvalplele...ntpkekikrkvtellalvglsdkkdsy.....psnlsggqkqrvaiaralasepkvllcdeatsaldpattqsilellkeinrrlgltillithemdvvkric.devavidkgeliekgtvseifshpktelakk 239
                 ++ ++ l+n++    +g+   ++g sg+gk+tl+  +   ++ t g+  ++g+ l   + +     rr  g + q   l+   tv + +    el+   n +k++ + +v+e l  +gl+   d+         +sggq +r  ia +l s+p v++ de ts ld   ++ + ++l+e+ r lg ti+   h        c d v ++ +g  i +g   +i +  +t+l ++
  MMETSP1137-20121227|5036_1 186 KQSLTILKNLAGSFEAGKATALLGPSGSGKTTLMDVL--SNRKTVGK--IEGEILFGGRTPTKKMLRRLCGYVEQFDTLVGELTVRQMLMYTAELKlttNFTKKDKELRVQEALETLGLTACADTViggtlKRGVSGGQLKRTNIALSLISQPPVIFLDEPTSGLDSFMANEVATVLRELAR-LGRTIVCTIHSPTAYAFSCfDAVMMLRDGMTIYEGPQDHIGAFFETSLGRQ 414
                 567999***************************9875..56777776..47888888888888899*********999999999999998888876223556888899*************99975221115679*********************************************87.999999999987776655548999999999999888888877777777665 PP

>> TIGR03269  met_CoM_red_A2: methyl coenzyme M reductase system, component A2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.6   0.0   0.00015    0.0078      10      61 ..      65     116 ..      60     166 .. 0.87
   2 !   18.8   0.0   2.1e-06    0.0001      10      75 ..     186     257 ..     180     296 .. 0.75
   3 !   25.7   0.0   1.7e-08   8.5e-07     405     515 ..     293     403 ..     239     412 .. 0.59

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 0.00015
   TIGR03269  10 fdglevlknisleleeGevlGilGksGaGksvllhllrGldeyeptsGkiiy 61 
                  + l +lkn+   ++ G+   +lG sG+Gk+ l+ +l   +   +++G+i +
  MMETSP1137-20121227|5036_1  65 KKSLAILKNLAGAFQPGQATALLGPSGSGKTTLMXVLSNRKTVGKIEGEIRF 116
                 5678899********************************9999999999865 PP

  == domain 2    score: 18.8 bits;  conditional E-value: 2.1e-06
   TIGR03269  10 fdglevlknisleleeGevlGilGksGaGksvllhllrGldeyeptsGkiiy......hvalcekcgyverp 75 
                  + l++lkn+   +e G+   +lG sG+Gk+ l+++l   +   +++G+i++      +  l   cgyve+ 
  MMETSP1137-20121227|5036_1 186 KQSLTILKNLAGSFEAGKATALLGPSGSGKTTLMDVLSNRKTVGKIEGEILFggrtptKKMLRRLCGYVEQF 257
                 567889********************************************9932222122233446666654 PP

  == domain 3    score: 25.7 bits;  conditional E-value: 1.7e-08
   TIGR03269 405 ivlkavGfdeekakeildklpdelseGerhrvalaqvlikeprivildeptGtmdpitkvkvaesilkareeleetfvivshd.mdfvlevcdraalmrdGkivkiGdpeei 515
                  +l + G++    + i   l   +s G+ +r  +a  li +p ++ ldept  +d    ++va  +l+    l++t v   h    +  +  d + ++rdG  +  G+ ++i
  MMETSP1137-20121227|5036_1 293 EALETLGLTACADTVIGGTLKRGVSGGQLKRTNIALSLISQPPVIFLDEPTSGLDSFMANEVAT-VLRELARLGRTIVCTIHSpTAYAFSCFDAVMMLRDGMTIYEGPQDHI 403
                 3455555555555555556666666777677777777777777777777777777766666654.45555666666666666523455555566666666666666655444 PP

>> TIGR01184  ntrCD: nitrate ABC transporter, ATP-binding proteins C and D
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.8   0.0    0.0097      0.49       2      58 ..      72     129 ..      71     167 .. 0.72
   2 !   50.5   0.0   8.1e-16   4.1e-14       2     206 ..     193     413 ..     192     416 .. 0.81

  Alignments for each domain:
  == domain 1    score: 7.8 bits;  conditional E-value: 0.0097
   TIGR01184   2 kdvdleikkgefislighsgcgkstllnliaglekpt..sgavilegkeitepgpdrmv 58 
                 k++    + g+  +l+g sg gk+tl+ +++  +     +g +++ g+ +    p+r v
  MMETSP1137-20121227|5036_1  72 KNLAGAFQPGQATALLGPSGSGKTTLMXVLSNRKTVGkiEGEIRFGGR-VPTLHPHRRV 129
                 66666789999******************9976553311466666554.4455566655 PP

  == domain 2    score: 50.5 bits;  conditional E-value: 8.1e-16
   TIGR01184   2 kdvdleikkgefislighsgcgkstllnliaglekp..tsgavilegkeitepgpdrmv..vfqnysllpwltvrenialavd.avlrdlskserreiveehielvglreaadkrpe.....qlsggmkqrvaiaralsirpklllldepfgaldaltreelqekllkiveearvtvlmvthdvdealllsdrvvmlt......ngpaakigeilevpler 206
                 k++  + + g+  +l+g sg gk+tl+++++  +     +g + + g+  t+    r+   v q  +l+  ltvr+ ++ + + + +++ +k++++  v+e +e +gl++ ad  ++      +sgg  +r  ia +l  +p +++ldep   ld++  +e+   l ++++  r+ v  +      a+   d v+ml       +gp+ +ig  +e  l r
  MMETSP1137-20121227|5036_1 193 KNLAGSFEAGKATALLGPSGSGKTTLMDVLSNRKTVgkIEGEILFGGRTPTKKMLRRLCgyVEQFDTLVGELTVRQMLMYTAElKLTTNFTKKDKELRVQEALETLGLTACADTVIGgtlkrGVSGGQLKRTNIALSLISQPPVIFLDEPTSGLDSFMANEVATVLRELARLGRTIVCTIHSPTAYAFSCFDAVMMLRdgmtiyEGPQDHIGAFFETSLGR 413
                 5666677889999******************98765115799***************9733668889*********988766626778899999*******************87642222269**************************************99999998887777777766777777778888887511112257888999888877665 PP

>> TIGR01257  rim_protein: rim ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.0     0.092       4.7    1957    1991 ..      73     107 ..      54     120 .. 0.67
   2 !   53.5   0.1   2.1e-17   1.1e-15    1958    2146 ..     195     391 ..     179     409 .. 0.82

  Alignments for each domain:
  == domain 1    score: 1.6 bits;  conditional E-value: 0.092
   TIGR01257 1957 rlcvgvrpgecfgllgvngagktttfkmltgdttv 1991
                   l+   +pg++  llg  g+gktt + +l+   tv
  MMETSP1137-20121227|5036_1   73 NLAGAFQPGQATALLGPSGSGKTTLMXVLSNRKTV 107 
                  44455566777777777777777766666665555 PP

  == domain 2    score: 53.5 bits;  conditional E-value: 2.1e-17
   TIGR01257 1958 lcvgvrpgecfgllgvngagktttfkmltgdttvts..gdatvagksiltnisdvhqnmgycpqfdaiddlltgrehlylyarlr...gvpaeeiekvanwsikslglslyadrlag.t....ysggnkrklstaialigcpplvlldepttgmdpqarrmlwntivsiiregravvltshsmeecealctrlaimvkg 2146
                  l+     g++  llg  g+gktt + +l+   tv    g+    g++   +   + +  gy+ qfd++   lt r+ l   a l+       ++ e   + ++++lgl+  ad++ g t     sgg+ ++   a++li  pp+++ldept+g+d      +  ++  + r gr++v t hs       c    +m++ 
  MMETSP1137-20121227|5036_1  195 LAGSFEAGKATALLGPSGSGKTTLMDVLSNRKTVGKieGEILFGGRTP--TKKMLRRLCGYVEQFDTLVGELTVRQMLMYTAELKlttNFTKKDKELRVQEALETLGLTACADTVIGgTlkrgVSGGQLKRTNIALSLISQPPVIFLDEPTSGLDSFMANEVATVLRELARLGRTIVCTIHSPTAYAFSCFDAVMMLRD 391 
                  55566789999********************99976115555555544..445578899*******************999999822234567788788899***********976624333369*********************************999*********************98888888777777665 PP

>> TIGR02323  CP_lyasePhnK: phosphonate C-P lyase system protein PhnK
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0   1.8e-05   0.00091      24      64 ..      78     120 ..      62     153 .. 0.79
   2 !   12.4   0.0   0.00034     0.017      26      68 ..     201     245 ..     186     252 .. 0.80
   3 !   20.2   0.0   1.5e-06   7.5e-05     140     217 ..     314     395 ..     305     403 .. 0.80

  Alignments for each domain:
  == domain 1    score: 16.6 bits;  conditional E-value: 1.8e-05
   TIGR02323  24 lypGevlgivGesGsGkstllkalaarlla..daGevtyesrs 64 
                 + pG+  +++G sGsGk+tl+  l++r +    +Ge+++  r 
  MMETSP1137-20121227|5036_1  78 FQPGQATALLGPSGSGKTTLMXVLSNRKTVgkIEGEIRFGGRV 120
                 57***********************997641156888887775 PP

  == domain 2    score: 12.4 bits;  conditional E-value: 0.00034
   TIGR02323  26 pGevlgivGesGsGkstllkalaarlla..daGevtyesrsrele 68 
                  G+  +++G sGsGk+tl++ l++r +    +Ge+ +  r+ +++
  MMETSP1137-20121227|5036_1 201 AGKATALLGPSGSGKTTLMDVLSNRKTVgkIEGEILFGGRTPTKK 245
                 688899*****************9976511568888888776555 PP

  == domain 3    score: 20.2 bits;  conditional E-value: 1.5e-06
   TIGR02323 140 aafsGGmqqrlqiarnlvtrprlvfm.eptGGlvsvqarll..llrglvrelglaviivth..lavarllaqrllvmkqGrvv 217
                 +  sGG  +r +ia +l+++p ++f+ ept Gl s  a  +  +lr+l r lg +++   h   a a    + +++++ G  +
  MMETSP1137-20121227|5036_1 314 RGVSGGQLKRTNIALSLISQPPVIFLdEPTSGLDSFMANEVatVLRELAR-LGRTIVCTIHspTAYAFSCFDAVMMLRDGMTI 395
                 678******************************99999876679999999.88888888884444444445666666666665 PP

>> TIGR01192  chvA: glucan exporter ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.0   0.0     0.001     0.052     351     382 ..      71     102 ..      34     119 .. 0.74
   2 !   36.5   0.0   9.6e-12   4.8e-10     334     528 ..     171     373 ..     131     405 .. 0.75

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 0.001
   TIGR01192 351 vrdvsfeakagqtvaivgptgagkttlinllq 382
                 +++++   + gq+ a++gp+g+gkttl+ +l 
  MMETSP1137-20121227|5036_1  71 LKNLAGAFQPGQATALLGPSGSGKTTLMXVLS 102
                 4566667788******************9986 PP

  == domain 2    score: 36.5 bits;  conditional E-value: 9.6e-12
   TIGR01192 334 avefrdisfefanss.qg...vrdvsfeakagqtvaivgptgagkttlinllq..rvydpksgqilidgvdiatvtreslrksiatvfqdagll.nrsirenirlgredatdeevveaakaaaasdfiek..rlkgydtlvgergnr.lsggerqrlaiarailknapilvldeatsaldvetearvkdaidalrk.nrttfiiah 528
                 ++ frd+++  +  + q    +++++    ag++ a++gp+g+gkttl+++l   +     +g+il  g    t t++ lr+    v q   l+ + ++r+ +    e     +  +  k    ++ +e    +   dt++g   +r +sgg+ +r  ia +++ + p++ lde ts ld      v   +  l +  rt     h
  MMETSP1137-20121227|5036_1 171 QISFRDLKYSVPLKKkQSltiLKNLAGSFEAGKATALLGPSGSGKTTLMDVLSnrKTVGKIEGEILFGG---RTPTKKMLRRLCGYVEQFDTLVgELTVRQMLMYTAELKLTTNFTKKDKELRVQEALETlgLTACADTVIGGTLKRgVSGGQLKRTNIALSLISQPPVIFLDEPTSGLDSFMANEVATVLRELARlGRTIVCTIH 373
                 6999****9998654144222578888999********************9962134455678888887...6899***********99777763679999999988888888888888888777777752245678999998766549*******************************98888887777666541455444444 PP

>> TIGR03415  ABC_choXWV_ATP: choline ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   0.0     0.037       1.9      48      78 ..      79     109 ..      67     140 .. 0.83
   2 !   36.6   0.0     1e-11   5.3e-10      46     247 ..     198     398 ..     184     405 .. 0.79

  Alignments for each domain:
  == domain 1    score: 5.2 bits;  conditional E-value: 0.037
   TIGR03415  48 eeGeilvlmGlsGsGkssllravnglnpvsr 78 
                 + G+ + l+G sGsGk++l+  +    +v +
  MMETSP1137-20121227|5036_1  79 QPGQATALLGPSGSGKTTLMXVLSNRKTVGK 109
                 5688899*************99887777765 PP

  == domain 2    score: 36.6 bits;  conditional E-value: 1e-11
   TIGR03415  46 dveeGeilvlmGlsGsGkssllravnglnpvsrGkvlvkdedkevdvakcdeatlrklrtkrvsmvfqkfallPWrtveenvafGlels...GvakaerrkrveeqlelvglaeWadkkvg.....elsGGmqqrvGlarafateadillmdePfsaldPliraklqdellelqkklkktivfvshd.ldealklGnriaimegGrivqlg 247
                 + e G  + l+G sGsGk++l+  +    +v + + ++  +          + t ++lr +    v q  +l+  +tv++ + +  el+     +k+++  rv+e le +gl++ ad+ +g      +sGG  +r  +a ++  + +++++deP s ld ++ +++   l el ++l +tiv   h     a+   + + ++++G  +  g
  MMETSP1137-20121227|5036_1 198 SFEAGKATALLGPSGSGKTTLMDVLSNRKTVGKIEGEILFGG--------RTPTKKMLR-RLCGYVEQFDTLVGELTVRQMLMYTAELKlttNFTKKDKELRVQEALETLGLTACADTVIGgtlkrGVSGGQLKRTNIALSLISQPPVIFLDEPTSGLDSFMANEVATVLREL-ARLGRTIVCTIHSpTAYAFSCFDAVMMLRDGMTIYEG 398
                 67889999**************99998888865544444333........334444454.3467787777999************99983224567888889***************98652222268**************************************9888877.68******99997245688888888888888877665 PP

>> TIGR03719  ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.9   0.0   0.00053     0.027      19     373 ..      69     106 ..      54     128 .. 0.56
   2 !   10.8   0.1   0.00058     0.029      17      89 ..     188     270 ..     175     287 .. 0.62
   3 !   16.8   0.0   8.8e-06   0.00045     161     216 ..     315     373 ..     279     379 .. 0.77

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 0.00053
   TIGR03719  19 eilkdislsffpgakiGvlGlnGaGkstllkimaGvdkefeGealaaegikvGyleqePkldeektvrenveegvaeikealdrfeeisaklaeedadfdklleeqaklqekidaadawdldskleiamdalrlpeedakveklsGGekrrvalcrlllekPdlllldePtnhldaesvaWlekflkeykGtvvavthdryfldnvaeWileldrGegipykgnysswleqkekrleqeekeeaarkkalkkeleWvrsspkarqakskarlaryeelaseesekkeetaeivippgerlGdkvievenlskafgdklliddlsfklpkggivGviGpnGaGkstlfklitgkek 373
                 +ilk++  +f pg    +l                                                                                                                                                                                                                                                                                                                             Gp G+Gk+tl+ +++++++
  MMETSP1137-20121227|5036_1  69 AILKNLAGAFQPGQATALL-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GPSGSGKTTLMXVLSNRKT 106
                 4555555555555555555.............................................................................................................................................................................................................................................................................................................................5555555555555555444 PP

  == domain 2    score: 10.8 bits;  conditional E-value: 0.00058
   TIGR03719  17 kkeilkdislsffpgakiGvlGlnGaGkstllkimaGvdk..efeGeal......aaegik..vGyleqePkldeektvrenv 89 
                 + +ilk++  sf  g    +lG+ G+Gk+tl+ +++   +  ++eGe+l      +++ ++  +Gy+eq  +l  e tvr+++
  MMETSP1137-20121227|5036_1 188 SLTILKNLAGSFEAGKATALLGPSGSGKTTLMDVLSNRKTvgKIEGEILfggrtpTKKMLRrlCGYVEQFDTLVGELTVRQML 270
                 45789999999999999999999999999999888653332234444331110002222212256666666666666666655 PP

  == domain 3    score: 16.8 bits;  conditional E-value: 8.8e-06
   TIGR03719 161 klsGGekrrvalcrlllekPdlllldePtnhld...aesvaWlekflkeykGtvvavth 216
                  +sGG+ +r  ++  l+++P +++ldePt  ld   a+ va + + l++   t+v+  h
  MMETSP1137-20121227|5036_1 315 GVSGGQLKRTNIALSLISQPPVIFLDEPTSGLDsfmANEVATVLRELARLGRTIVCTIH 373
                 589****************************9966667888888888888888887776 PP

>> TIGR01271  CFTR_protein: cystic fibrosis transmembrane conductor regulator (CFTR)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.1   0.0   9.8e-05     0.005    1231    1277 ..      67     116 ..      45     121 .. 0.80
   2 !   15.3   0.0   1.1e-05   0.00056    1231    1392 ..     188     354 ..     164     406 .. 0.79

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 9.8e-05
   TIGR01271 1231 gravlqdlsfsveagqrvgllgrtgsgkstllsallr...llstegeiqi 1277
                    a+l++l+ + ++gq   llg +gsgk+tl+  l     + + egei+ 
  MMETSP1137-20121227|5036_1   67 SLAILKNLAGAFQPGQATALLGPSGSGKTTLMXVLSNrktVGKIEGEIRF 116 
                  569***************************98776531114556777765 PP

  == domain 2    score: 15.3 bits;  conditional E-value: 1.1e-05
   TIGR01271 1231 gravlqdlsfsveagqrvgllgrtgsgkstllsallr...llstegeiqidgvswnsvtlqkwrkafgvipq.kvfilsgtfrknldpyeqys.deeiwkvaeevglksvieqfpdkldfvlvdggyv...lsnghkqlmclarsilskakillldepsafldpvtlqii 1392
                    ++l++l+ s eag+   llg +gsgk+tl+  l     + + egei   g    + t +  r+  g + q   ++   t r+ l   ++     ++ k  +e+ ++  +e +        v gg +   +s g  +   +a s++s+  +++ldep++ ld    + +
  MMETSP1137-20121227|5036_1  188 SLTILKNLAGSFEAGKATALLGPSGSGKTTLMDVLSNrktVGKIEGEILFGGR---TPTKKMLRRLCGYVEQfDTLVGELTVRQMLMYTAELKlTTNFTKKDKELRVQEALETLGLTACADTVIGGTLkrgVSGGQLKRTNIALSLISQPPVIFLDEPTSGLDSFMANEV 354 
                  5689**************************98776531114566777777775...4567778999999998345666678998887666654266788889999999999999888877888888774446888888899999**************999998765555 PP

>> TIGR01194  cyc_pep_trnsptr: cyclic peptide transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0       8.6   4.4e+02     370     387 ..      84     101 ..      78     114 .. 0.83
   2 !   23.4   0.0   8.6e-08   4.4e-06     336     548 ..     171     395 ..     120     399 .. 0.75

  Alignments for each domain:
  == domain 1    score: -3.1 bits;  conditional E-value: 8.6
   TIGR01194 370 vyivGenGcGkstlikll 387
                   ++G  G Gk+tl+ +l
  MMETSP1137-20121227|5036_1  84 TALLGPSGSGKTTLMXVL 101
                 5678999*******9998 PP

  == domain 2    score: 23.4 bits;  conditional E-value: 8.6e-08
   TIGR01194 336 slelkdvrysykdvessegfalGpidlriasGelvyivGenGcGkstliklllGlyi..pqeGellldGeavsdes.r..ddyrdlfsavfadyylfddlvqpde.......kkqasldqattylsrleledkvk.vedlnystttdlstGqrkrlalvnayleerpvllldewaadqdpafkrvfyeellpdlkrrGktilvishddr.y.feladrlikladGkvv 548
                  + ++d++ys +  +  +   l  +    + G+   ++G  G Gk+tl+ +l         eGe+l+ G + +++  r    y + f ++  +  + + l+   e        k+    + ++ l++l+l    + v ++       +s Gq kr  +  + + + pv+ lde ++  d  f       +l +l r G+ti+   h    y f   d ++ l dG  +
  MMETSP1137-20121227|5036_1 171 QISFRDLKYSVPLKKKQSLTILKNLAGSFEAGKATALLGPSGSGKTTLMDVLSNRKTvgKIEGEILFGGRTPTKKMlRrlCGYVEQFDTLVGELTVRQMLMYTAElklttnfTKKDKELRVQEALETLGLTACADtVIGGTLK--RGVSGGQLKRTNIALSLISQPPVIFLDEPTSGLDS-FMANEVATVLRELARLGRTIVCTIHSPTaYaFSCFDAVMMLRDGMTI 395
                 4778999999999999999999999999************************9865422579*******9988875232358***********99999998876621111112333334578889999998776514555554..899****************************9996.6666677899***********99997542347888999999999876 PP

>> TIGR02322  phosphon_PhnN: phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.5   0.0    0.0016     0.079       4      25 ..      84     105 ..      81     123 .. 0.78
   2 !   12.1   0.0    0.0005     0.025       2      25 ..     203     226 ..     202     244 .. 0.83

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 0.0016
   TIGR02322   4 ilvvGpsGaGKDtlldlararl 25 
                  +++GpsG+GK tl+ ++ +r 
  MMETSP1137-20121227|5036_1  84 TALLGPSGSGKTTLMXVLSNRK 105
                 6899***********9987765 PP

  == domain 2    score: 12.1 bits;  conditional E-value: 0.0005
   TIGR02322   2 rlilvvGpsGaGKDtlldlararl 25 
                 +  +++GpsG+GK tl+d++ +r 
  MMETSP1137-20121227|5036_1 203 KATALLGPSGSGKTTLMDVLSNRK 226
                 56789*************987765 PP

>> TIGR00630  uvra: excinuclease ABC subunit A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.0       0.1       5.1     623     651 ..      71      99 ..      56     113 .. 0.84
   2 ?    5.2   0.0      0.02         1     622     654 ..     191     222 ..     176     249 .. 0.86
   3 !   12.0   0.0   0.00018    0.0093     823     889 ..     310     373 ..     265     377 .. 0.78

  Alignments for each domain:
  == domain 1    score: 2.9 bits;  conditional E-value: 0.1
   TIGR00630 623 lkdidvsiplglltvitGvsgsGkstLin 651
                 lk++   +  g+ t++ G+sgsGk tL+ 
  MMETSP1137-20121227|5036_1  71 LKNLAGAFQPGQATALLGPSGSGKTTLMX 99 
                 788888899999**************985 PP

  == domain 2    score: 5.2 bits;  conditional E-value: 0.02
   TIGR00630 622 nlkdidvsiplglltvitGvsgsGkstLindiL 654
                  lk++  s+  g+ t++ G+sgsGk tL+ d+L
  MMETSP1137-20121227|5036_1 191 ILKNLAGSFEAGKATALLGPSGSGKTTLM-DVL 222
                 58999999*******************97.555 PP

  == domain 3    score: 12.0 bits;  conditional E-value: 0.00018
   TIGR00630 823 GqpattLsGGeaqrvkLakeLskrstgktlyilDePttGLhfdDikkLlevlqrlvdkGntvvvieh 889
                 G     +sGG  +r  +a  L  +     +  lDePt GL     +++ +vl++l+  G t+v   h
  MMETSP1137-20121227|5036_1 310 GTLKRGVSGGQLKRTNIALSLISQ---PPVIFLDEPTSGLDSFMANEVATVLRELARLGRTIVCTIH 373
                 44456789*******999999765...456779********9999****************998666 PP

>> TIGR00157  TIGR00157: ribosome small subunit-dependent GTPase A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.9   0.0    0.0043      0.22      93     158 ..      51     115 ..      36     124 .. 0.78
   2 !   12.2   0.1    0.0004      0.02      90     167 ..     169     245 ..     143     254 .. 0.79

  Alignments for each domain:
  == domain 1    score: 8.9 bits;  conditional E-value: 0.0043
   TIGR00157  93 eelknlgYkvllvsvkneegleelkeklk.krisvfaGqSGVGKSSLiNlldpevkqkvkevseklk 158
                  ++++l Y+v l  +k+   l++l  +++  + + + G+SG GK  L+  l+ +  ++v ++ ++ +
  MMETSP1137-20121227|5036_1  51 VTFSKLCYTVPLKKKKSLAILKNLAGAFQpGQATALLGPSGSGKTTLMXVLSNR--KTVGKIEGEIR 115
                 46788999999999999999********9446789*************998765..44555555555 PP

  == domain 2    score: 12.2 bits;  conditional E-value: 0.0004
   TIGR00157  90 eqleelknlgYkvllvsvkneegleelkeklk.krisvfaGqSGVGKSSLiNlldpevkqkvkevseklklGkhTTtsv 167
                      +++l Y+v l  +++   l++l   ++  + + + G+SG GK  L+  l+ +  ++v ++ ++  +G  T t+ 
  MMETSP1137-20121227|5036_1 169 GLQISFRDLKYSVPLKKKQSLTILKNLAGSFEaGKATALLGPSGSGKTTLMDVLSNR--KTVGKIEGEILFGGRTPTKK 245
                 455679999****999999999********97358899**************99865..56777888888887777665 PP

>> TIGR00929  VirB4_CagE: type IV secretion/conjugal transfer ATPase, VirB4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.3   0.1   0.00061     0.031     440     458 ..      84     102 ..      78     106 .. 0.90
   2 !   10.7   0.1   0.00044     0.022     440     459 ..     205     224 ..     197     237 .. 0.89

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 0.00061
   TIGR00929 440 TlIfGptgsGKTvllnfll 458
                 T+++Gp+gsGKT+l+ +l 
  MMETSP1137-20121227|5036_1  84 TALLGPSGSGKTTLMXVLS 102
                 99*************9985 PP

  == domain 2    score: 10.7 bits;  conditional E-value: 0.00044
   TIGR00929 440 TlIfGptgsGKTvllnflla 459
                 T+++Gp+gsGKT+l+ +l +
  MMETSP1137-20121227|5036_1 205 TALLGPSGSGKTTLMDVLSN 224
                 99*************99865 PP

>> TIGR03499  FlhF: flagellar biosynthesis protein FlhF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.9   0.1    0.0028      0.14     193     213 ..      76      96 ..      64     107 .. 0.79
   2 !   10.7   0.1    0.0017     0.085     192     213 ..     196     217 ..     184     220 .. 0.81

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 0.0028
   TIGR03499 193 eilekggviaLvGptGvGKTT 213
                  + + g+  aL+Gp G+GKTT
  MMETSP1137-20121227|5036_1  76 GAFQPGQATALLGPSGSGKTT 96 
                 555667799***********9 PP

  == domain 2    score: 10.7 bits;  conditional E-value: 0.0017
   TIGR03499 192 deilekggviaLvGptGvGKTT 213
                 +   e g+  aL+Gp G+GKTT
  MMETSP1137-20121227|5036_1 196 AGSFEAGKATALLGPSGSGKTT 217
                 55567889*************9 PP

>> TIGR00957  MRP_assoc_pro: multi drug resistance-associated protein (MRP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.0      0.46        23     654     701 ..      71     120 ..      39     128 .. 0.70
   2 !   14.2   0.0   2.3e-05    0.0011     652     799 ..     190     354 ..     143     403 .. 0.75

  Alignments for each domain:
  == domain 1    score: -0.1 bits;  conditional E-value: 0.46
   TIGR00957 654 lngltlsipegalvavvgqvgcgkssllsalla..emdkvegkvalkgsv 701
                 l++l      g   a++g+ g gk++l+  l     + k+eg++ + g v
  MMETSP1137-20121227|5036_1  71 LKNLAGAFQPGQATALLGPSGSGKTTLMXVLSNrkTVGKIEGEIRFGGRV 120
                 55555556667788899999999999988886522467899988888776 PP

  == domain 2    score: 14.2 bits;  conditional E-value: 2.3e-05
   TIGR00957 652 ptlngltlsipegalvavvgqvgcgkssllsalla..emdkvegkvalkgs..........vayvpq.qawiqndslrenilfgkale..ekyyk..avleacalladleilpsgdrteigekgvnlsggqkqrvslaravysdadiyllddplsavdahvakhi 799
                   l++l  s   g   a++g+ g gk++l+  l     + k+eg++ + g             yv q ++ + + ++r+ +++  +l+   ++ k  + l+    l  l +  + d    g     +sggq +r  +a ++ s+  + +ld+p s +d+ +a+ +
  MMETSP1137-20121227|5036_1 190 TILKNLAGSFEAGKATALLGPSGSGKTTLMDVLSNrkTVGKIEGEILFGGRtptkkmlrrlCGYVEQfDTLVGELTVRQMLMYTAELKltTNFTKkdKELRVQEALETLGLTACADTVIGGTLKRGVSGGQLKRTNIALSLISQPPVIFLDEPTSGLDSFMANEV 354
                 457788888899999***************9997622578****99766642222222222689*9944678899********99876213433311456666777777777777766666677789********************************999876 PP

>> TIGR02528  EutP: ethanolamine utilization protein, EutP
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   0.0     0.015      0.78       4      26 ..      85     107 ..      82     117 .. 0.87
   2 !    8.9   0.0    0.0074      0.38       3      26 ..     205     228 ..     203     235 .. 0.87

  Alignments for each domain:
  == domain 1    score: 7.8 bits;  conditional E-value: 0.015
   TIGR02528   4 mliGsvgcGkttLtqaLkgeeik 26 
                 +l+G++g+GkttL+  L++ ++ 
  MMETSP1137-20121227|5036_1  85 ALLGPSGSGKTTLMXVLSNRKTV 107
                 689***************99876 PP

  == domain 2    score: 8.9 bits;  conditional E-value: 0.0074
   TIGR02528   3 imliGsvgcGkttLtqaLkgeeik 26 
                  +l+G++g+GkttL++ L++ ++ 
  MMETSP1137-20121227|5036_1 205 TALLGPSGSGKTTLMDVLSNRKTV 228
                 5799***************99875 PP

>> TIGR01313  therm_gnt_kin: carbohydrate kinase, thermoresistant glucokinase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   0.0     0.023       1.2       3      30 ..      86     113 ..      84     134 .. 0.89
   2 !    8.7   0.0    0.0058       0.3       3      34 ..     207     238 ..     205     249 .. 0.85

  Alignments for each domain:
  == domain 1    score: 6.7 bits;  conditional E-value: 0.023
   TIGR01313   3 lmGvaGsGkstiakelakklgakfieGD 30 
                 l+G++GsGk+t+   l+++  +  ieG+
  MMETSP1137-20121227|5036_1  86 LLGPSGSGKTTLMXVLSNRKTVGKIEGE 113
                 89******************99999996 PP

  == domain 2    score: 8.7 bits;  conditional E-value: 0.0058
   TIGR01313   3 lmGvaGsGkstiakelakklgakfieGDdlhp 34 
                 l+G++GsGk+t+   l+++  +  ieG+ l  
  MMETSP1137-20121227|5036_1 207 LLGPSGSGKTTLMDVLSNRKTVGKIEGEILFG 238
                 89*************************98764 PP

>> TIGR03420  DnaA_homol_Hda: DnaA regulatory inactivator Hda
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   0.0     0.023       1.2      23      60 ..      65     103 ..      52     109 .. 0.78
   2 ?    7.4   0.0     0.012       0.6      22      60 ..     185     224 ..     176     234 .. 0.81

  Alignments for each domain:
  == domain 1    score: 6.5 bits;  conditional E-value: 0.023
   TIGR03420  23 aellaalrel.aeakaerllylwGesgsGksHLLqAaca 60 
                 ++ la l++l  + + ++++ l G+sgsGk+ L+  +++
  MMETSP1137-20121227|5036_1  65 KKSLAILKNLaGAFQPGQATALLGPSGSGKTTLMXVLSN 103
                 566677777744567789999************987665 PP

  == domain 2    score: 7.4 bits;  conditional E-value: 0.012
   TIGR03420  22 naellaalrel.aeakaerllylwGesgsGksHLLqAaca 60 
                 +++ l+ l++l  + +a++++ l G+sgsGk+ L+  +++
  MMETSP1137-20121227|5036_1 185 KKQSLTILKNLaGSFEAGKATALLGPSGSGKTTLMDVLSN 224
                 5677778888855678999***************987665 PP

>> TIGR03263  guanyl_kin: guanylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   0.1      0.02         1       5      25 ..      85     105 ..      81     119 .. 0.84
   2 ?    7.4   0.1     0.013      0.66       4      25 ..     205     226 ..     202     243 .. 0.83

  Alignments for each domain:
  == domain 1    score: 6.8 bits;  conditional E-value: 0.02
   TIGR03263   5 visgpsGvGKstlvkklleek 25 
                  + gpsG GK+tl+  l ++k
  MMETSP1137-20121227|5036_1  85 ALLGPSGSGKTTLMXVLSNRK 105
                 578***********9988755 PP

  == domain 2    score: 7.4 bits;  conditional E-value: 0.013
   TIGR03263   4 ivisgpsGvGKstlvkklleek 25 
                 + + gpsG GK+tl++ l ++k
  MMETSP1137-20121227|5036_1 205 TALLGPSGSGKTTLMDVLSNRK 226
                 5688***********9998755 PP

>> TIGR02640  gas_vesic_GvpN: gas vesicle protein GvpN
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   0.0     0.033       1.7      20      44 ..      80     104 ..      67     116 .. 0.82
   2 ?    6.7   0.0     0.019      0.98      18      44 ..     199     225 ..     184     234 .. 0.80

  Alignments for each domain:
  == domain 1    score: 5.9 bits;  conditional E-value: 0.033
   TIGR02640  20 sgypvhlrGPaGtGktslalhvakk 44 
                  g +  l GP+G+Gkt+l   ++++
  MMETSP1137-20121227|5036_1  80 PGQATALLGPSGSGKTTLMXVLSNR 104
                 5777889***********8887765 PP

  == domain 2    score: 6.7 bits;  conditional E-value: 0.019
   TIGR02640  18 lksgypvhlrGPaGtGktslalhvakk 44 
                 +++g +  l GP+G+Gkt+l   ++++
  MMETSP1137-20121227|5036_1 199 FEAGKATALLGPSGSGKTTLMDVLSNR 225
                 67899999***********97766654 PP

>> TIGR02237  recomb_radB: DNA repair and recombination protein RadB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   0.1     0.052       2.6       5      33 ..      74     102 ..      70     112 .. 0.83
   2 ?    7.7   0.1     0.012      0.61       5      29 ..     195     219 ..     191     234 .. 0.85

  Alignments for each domain:
  == domain 1    score: 5.7 bits;  conditional E-value: 0.052
   TIGR02237   5 lgGgvergiitqiyGpggsGKtnialila 33 
                 l G  + g  t + Gp gsGKt++  +l+
  MMETSP1137-20121227|5036_1  74 LAGAFQPGQATALLGPSGSGKTTLMXVLS 102
                 6789999999*************976655 PP

  == domain 2    score: 7.7 bits;  conditional E-value: 0.012
   TIGR02237   5 lgGgvergiitqiyGpggsGKtnia 29 
                 l G  e+g  t + Gp gsGKt++ 
  MMETSP1137-20121227|5036_1 195 LAGSFEAGKATALLGPSGSGKTTLM 219
                 789*******************985 PP

>> TIGR00954  3a01203: peroxysomal long chain fatty acyl transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.0      0.14       7.2     448     500 ..      51     102 ..      15     107 .. 0.71
   2 !    8.0   0.0    0.0035      0.18     446     620 ..     170     352 ..     128     384 .. 0.70

  Alignments for each domain:
  == domain 1    score: 2.7 bits;  conditional E-value: 0.14
   TIGR00954 448 aqdngikfeniplvtPegdvlieeLsfevksGnhlLiiGPnGcGKsslfRilg 500
                  +++++ +  +pl   +   ++++L+   + G+   ++GP G GK  l+ +l+
  MMETSP1137-20121227|5036_1  51 VTFSKL-CYTVPLKKKKSLAILKNLAGAFQPGQATALLGPSGSGKTTLMXVLS 102
                 444443.445677777777888899999999******************9997 PP

  == domain 2    score: 8.0 bits;  conditional E-value: 0.0035
   TIGR00954 446 veaqdngikfeniplvtPegdvlieeLsfevksGnhlLiiGPnGcGKsslfRilgelWPvyg.........glltkpeegkl.FyvPqrPYmslg.tlRdqiiYPdssedfkerglsdkdL..eqiLeevkLedllereggwdavqdWkdvLsgGekqRiamARlfyHkPkfavLDEctsAvsvdvEd 620
                 ++ ++  +k+  +pl   +   ++++L+   + G+   ++GP G GK  l+ +l++   v            + tk    +l  yv q   +    t+R+ ++Y    +  ++   +dk+L  ++ Le++ L+   +  +g       k  +sgG+ +R ++A  +  +P  + LDE ts +   + +
  MMETSP1137-20121227|5036_1 170 LQISFRDLKY-SVPLKKKQSLTILKNLAGSFEAGKATALLGPSGSGKTTLMDVLSNRKTVGKiegeilfggRTPTKKMLRRLcGYVEQFDTLVGElTVRQMLMYTAELKLTTNFTKKDKELrvQEALETLGLTACADTVIGG----TLKRGVSGGQLKRTNIALSLISQPPVIFLDEPTSGLDSFMAN 352
                 4445555554.466666678888999999999**********************9877665567788885322234444444259999877766669999999998876666556666665326788888888888777764....356778999999999999999999999999999877555544 PP

>> TIGR01613  primase_Cterm: phage/plasmid primase, P4 family, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.1      0.11       5.4      68      98 ..      73     103 ..      69     110 .. 0.84
   2 !    7.9   0.1     0.005      0.26      67      98 ..     193     224 ..     189     231 .. 0.91

  Alignments for each domain:
  == domain 1    score: 3.6 bits;  conditional E-value: 0.11
   TIGR01613  68 sliGetseqklffLfGnGanGKstfqqvlsn 98 
                 +l G  +   +  L+G  ++GK+t++ vlsn
  MMETSP1137-20121227|5036_1  73 NLAGAFQPGQATALLGPSGSGKTTLMXVLSN 103
                 66777777788899***************97 PP

  == domain 2    score: 7.9 bits;  conditional E-value: 0.005
   TIGR01613  67 ysliGetseqklffLfGnGanGKstfqqvlsn 98 
                  +l G+ +  k+  L+G  ++GK+t+++vlsn
  MMETSP1137-20121227|5036_1 193 KNLAGSFEAGKATALLGPSGSGKTTLMDVLSN 224
                 5899999999********************97 PP

>> TIGR00231  small_GTP: small GTP-binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   0.1     0.074       3.7       8      29 ..      86     106 ..      82     115 .. 0.84
   2 ?    6.5   0.1     0.028       1.4       7      29 ..     206     227 ..     200     238 .. 0.83

  Alignments for each domain:
  == domain 1    score: 5.1 bits;  conditional E-value: 0.074
   TIGR00231   8 ivGhvdvGKstLlnsllknkis 29 
                 ++G +++GK+tL+  l+ +k  
  MMETSP1137-20121227|5036_1  86 LLGPSGSGKTTLMXVLSNRK-T 106
                 78999***********9999.4 PP

  == domain 2    score: 6.5 bits;  conditional E-value: 0.028
   TIGR00231   7 vivGhvdvGKstLlnsllknkis 29 
                 +++G +++GK+tL++ l+ +k  
  MMETSP1137-20121227|5036_1 206 ALLGPSGSGKTTLMDVLSNRK-T 227
                 68999*************999.4 PP

>> TIGR03167  tRNA_sel_U_synt: tRNA 2-selenouridine synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   0.0     0.038       1.9     117     153 ..      71     106 ..      65     116 .. 0.80
   2 ?    4.9   0.1     0.064       3.3     125     152 ..     200     226 ..     186     235 .. 0.76

  Alignments for each domain:
  == domain 1    score: 5.6 bits;  conditional E-value: 0.038
   TIGR03167 117 ldeleelaqelklvvlgGnTGsgKtelLeklaeagaq 153
                 l++l  + q+ + ++l G  GsgKt+l+  l+++ ++
  MMETSP1137-20121227|5036_1  71 LKNLAGAFQPGQATALLGPSGSGKTTLMXVLSNR-KT 106
                 556666667778999**************99988.44 PP

  == domain 2    score: 4.9 bits;  conditional E-value: 0.064
   TIGR03167 125 qelklvvlgGnTGsgKtelLeklaeaga 152
                 +  k ++l G  GsgKt+l++ l+++ +
  MMETSP1137-20121227|5036_1 200 EAGKATALLGPSGSGKTTLMDVLSNR-K 226
                 4457899**************99988.4 PP

>> TIGR00224  pckA: phosphoenolpyruvate carboxykinase (ATP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   0.0     0.024       1.2     204     255 ..      53     108 ..      43     113 .. 0.73
   2 ?    3.8   0.0     0.093       4.7     208     255 ..     178     229 ..     139     234 .. 0.78

  Alignments for each domain:
  == domain 1    score: 5.7 bits;  conditional E-value: 0.024
   TIGR00224 204 fsvmnyllplkdvlslhcsan...vGekGdvalffGlsGtGkttlsa.dpkrkliG 255
                 fs + y +plk+  sl    n     + G  + ++G sG+Gkttl    ++rk +G
  MMETSP1137-20121227|5036_1  53 FSKLCYTVPLKKKKSLAILKNlagAFQPGQATALLGPSGSGKTTLMXvLSNRKTVG 108
                 7888999997766666555551005566****************965156777777 PP

  == domain 2    score: 3.8 bits;  conditional E-value: 0.093
   TIGR00224 208 nyllplkdvlslhc...sanvGekGdvalffGlsGtGkttls.adpkrkliG 255
                  y +plk+  sl      a   e G  + ++G sG+Gkttl    ++rk +G
  MMETSP1137-20121227|5036_1 178 KYSVPLKKKQSLTIlknLAGSFEAGKATALLGPSGSGKTTLMdVLSNRKTVG 229
                 677776655555440004555577****************961456777777 PP

>> TIGR03598  GTPase_YsxC: ribosome biogenesis GTP-binding protein YsxC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   0.0      0.14         7      20      46 ..      83     109 ..      70     113 .. 0.88
   2 ?    5.4   0.0     0.057       2.9      19      46 ..     203     230 ..     190     236 .. 0.88

  Alignments for each domain:
  == domain 1    score: 4.1 bits;  conditional E-value: 0.14
   TIGR03598  20 eiafaGrSNvGKSsliNaLtnrkklar 46 
                   a++G S +GK +l+ +L nrk++ +
  MMETSP1137-20121227|5036_1  83 ATALLGPSGSGKTTLMXVLSNRKTVGK 109
                 579********************9876 PP

  == domain 2    score: 5.4 bits;  conditional E-value: 0.057
   TIGR03598  19 peiafaGrSNvGKSsliNaLtnrkklar 46 
                 +  a++G S +GK +l+ +L nrk++ +
  MMETSP1137-20121227|5036_1 203 KATALLGPSGSGKTTLMDVLSNRKTVGK 230
                 5679********************9876 PP

>> TIGR01351  adk: adenylate kinases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.1      0.15       7.6       4      27 ..      86     109 ..      83     113 .. 0.86
   2 ?    5.4   0.0     0.052       2.6       4      33 ..     207     235 ..     204     277 .. 0.80

  Alignments for each domain:
  == domain 1    score: 3.9 bits;  conditional E-value: 0.15
   TIGR01351   4 llGpPGsGKGTqakrlaeklglvh 27 
                 llGp GsGK T    l+++ ++ +
  MMETSP1137-20121227|5036_1  86 LLGPSGSGKTTLMXVLSNRKTVGK 109
                 89***********99999877665 PP

  == domain 2    score: 5.4 bits;  conditional E-value: 0.052
   TIGR01351   4 llGpPGsGKGTqakrlaeklglvhistGdl 33 
                 llGp GsGK T    l+++ ++ +i  G++
  MMETSP1137-20121227|5036_1 207 LLGPSGSGKTTLMDVLSNRKTVGKIE-GEI 235
                 89***************999888873.555 PP

>> TIGR00150  HI0065_YjeE: ATPase, YjeE family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.1      0.15       7.4      11      42 ..      70     101 ..      61     110 .. 0.76
   2 ?    5.9   0.1     0.046       2.3       9      42 ..     189     222 ..     182     231 .. 0.81

  Alignments for each domain:
  == domain 1    score: 4.3 bits;  conditional E-value: 0.15
   TIGR00150  11 lgkklakaldlatvvlLkGdlGaGKttlvkgl 42 
                 + k+la a + ++   L G  G+GKttl+  l
  MMETSP1137-20121227|5036_1  70 ILKNLAGAFQPGQATALLGPSGSGKTTLMXVL 101
                 556666667778888999**********8765 PP

  == domain 2    score: 5.9 bits;  conditional E-value: 0.046
   TIGR00150   9 lklgkklakaldlatvvlLkGdlGaGKttlvkgl 42 
                 l + k+la + + ++   L G  G+GKttl+  l
  MMETSP1137-20121227|5036_1 189 LTILKNLAGSFEAGKATALLGPSGSGKTTLMDVL 222
                 5566788888999999**************8765 PP

>> TIGR00585  mutl: DNA mismatch repair protein MutL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.1      0.13       6.4     113     160 ..      16      66 ..       3      77 .. 0.68
   2 ?    4.9   0.1     0.075       3.8     118     161 ..     146     188 ..     131     200 .. 0.75

  Alignments for each domain:
  == domain 1    score: 4.2 bits;  conditional E-value: 0.13
   TIGR00585 113 kts...aedglalkvkaegk.leeeikpaskkkGTtVtvrdLFynlpvRrke 160
                 +t+   ++ + + +v+ +g+  + + +++++ +G +Vt ++L y++p ++k+
  MMETSP1137-20121227|5036_1  16 TTAaysRAMNGKNDVE-NGGsRQPKETTTKHSRGLQVTFSKLCYTVPLKKKK 66 
                 3333344444455554.444367777789999*****************995 PP

  == domain 2    score: 4.9 bits;  conditional E-value: 0.075
   TIGR00585 118 dglalkvkaegkleeeikpaskkkGTtVtvrdLFynlpvRrkef 161
                 +++++++ ++g+ + + ++a++ +G +++ rdL y++p ++k+ 
  MMETSP1137-20121227|5036_1 146 NEVKVQI-EKGSSTRKESTAKRSRGLQISFRDLKYSVPLKKKQS 188
                 4556666.577767777889*********************955 PP

>> TIGR03922  T7SS_EccA: type VII secretion AAA-ATPase EccA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.1     0.094       4.8     314     334 ..      83     103 ..      62     108 .. 0.84
   2 ?    3.7   0.0     0.076       3.9     314     334 ..     204     224 ..     183     229 .. 0.88

  Alignments for each domain:
  == domain 1    score: 3.4 bits;  conditional E-value: 0.094
   TIGR03922 314 HlllaGPPGtGkttiArvvak 334
                  + l+GP G Gktt+  v+++
  MMETSP1137-20121227|5036_1  83 ATALLGPSGSGKTTLMXVLSN 103
                 56799**********999986 PP

  == domain 2    score: 3.7 bits;  conditional E-value: 0.076
   TIGR03922 314 HlllaGPPGtGkttiArvvak 334
                  + l+GP G Gktt+  v+++
  MMETSP1137-20121227|5036_1 204 ATALLGPSGSGKTTLMDVLSN 224
                 5779***********999986 PP

>> TIGR00602  rad24: checkpoint protein rad24
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   0.2     0.023       1.2     111     133 ..      82     104 ..      59     111 .. 0.71
   2 ?   -2.5   0.0       5.4   2.8e+02      21      42 ..     150     171 ..     141     201 .. 0.72
   3 ?    4.7   0.1     0.037       1.9     115     133 ..     207     225 ..     193     233 .. 0.83

  Alignments for each domain:
  == domain 1    score: 5.4 bits;  conditional E-value: 0.023
   TIGR00602 111 riLLitGPsGCgKsTvikiLsKe 133
                 +   + GPsG gK+T + +Ls  
  MMETSP1137-20121227|5036_1  82 QATALLGPSGSGKTTLMXVLSNR 104
                 444567**************975 PP

  == domain 2    score: -2.5 bits;  conditional E-value: 5.4
   TIGR00602  21 skItksSlssktSsvRkknass 42 
                  +I+k S+++k S+ ++ ++ +
  MMETSP1137-20121227|5036_1 150 VQIEKGSSTRKESTAKRSRGLQ 171
                 6899999999999877776544 PP

  == domain 3    score: 4.7 bits;  conditional E-value: 0.037
   TIGR00602 115 itGPsGCgKsTvikiLsKe 133
                 + GPsG gK+T + +Ls  
  MMETSP1137-20121227|5036_1 207 LLGPSGSGKTTLMDVLSNR 225
                 45**************975 PP

>> TIGR00152  TIGR00152: dephospho-CoA kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.1       0.2        10       3      23 ..      85     105 ..      83     112 .. 0.87
   2 ?    4.9   0.1     0.089       4.5       3      23 ..     206     226 ..     204     236 .. 0.86

  Alignments for each domain:
  == domain 1    score: 3.7 bits;  conditional E-value: 0.2
   TIGR00152   3 gltGgigsGKstvakilkdky 23 
                 +l G  gsGK+t++ +l+++ 
  MMETSP1137-20121227|5036_1  85 ALLGPSGSGKTTLMXVLSNRK 105
                 899**************9875 PP

  == domain 2    score: 4.9 bits;  conditional E-value: 0.089
   TIGR00152   3 gltGgigsGKstvakilkdky 23 
                 +l G  gsGK+t++++l+++ 
  MMETSP1137-20121227|5036_1 206 ALLGPSGSGKTTLMDVLSNRK 226
                 899**************9976 PP

>> TIGR00176  mobB: molybdopterin-guanine dinucleotide biosynthesis protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.1      0.13       6.6       4      17 ..      86      99 ..      84     108 .. 0.84
   2 ?    4.7   0.1      0.12       5.9       4      17 ..     207     220 ..     205     229 .. 0.84

  Alignments for each domain:
  == domain 1    score: 4.6 bits;  conditional E-value: 0.13
   TIGR00176  4 ivgykdsGKTtlie 17
                + g+++sGKTtl+ 
  MMETSP1137-20121227|5036_1 86 LLGPSGSGKTTLMX 99
                679*********86 PP

  == domain 2    score: 4.7 bits;  conditional E-value: 0.12
   TIGR00176   4 ivgykdsGKTtlie 17 
                 + g+++sGKTtl+ 
  MMETSP1137-20121227|5036_1 207 LLGPSGSGKTTLMD 220
                 679*********86 PP

>> TIGR00382  clpX: ATP-dependent Clp protease, ATP-binding subunit ClpX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.1      0.17       8.4     121     140 ..      85     104 ..      80     109 .. 0.84
   2 ?    4.7   0.1     0.055       2.8     118     140 ..     204     225 ..     184     230 .. 0.78

  Alignments for each domain:
  == domain 1    score: 3.1 bits;  conditional E-value: 0.17
   TIGR00382 121 lliGptGsGktllaqtlake 140
                  l+Gp+GsGkt l   l+++
  MMETSP1137-20121227|5036_1  85 ALLGPSGSGKTTLMXVLSNR 104
                 699********999888765 PP

  == domain 2    score: 4.7 bits;  conditional E-value: 0.055
   TIGR00382 118 snilliGptGsGktllaqtlake 140
                 +   l+Gp+GsGkt l + l+++
  MMETSP1137-20121227|5036_1 204 A-TALLGPSGSGKTTLMDVLSNR 225
                 4.4688**********9999865 PP

>> TIGR03348  VI_IcmF: type VI secretion protein IcmF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.1     0.091       4.6     116     128 ..      86      98 ..      85     103 .. 0.90
   2 ?    3.2   0.1     0.071       3.6     116     129 ..     207     220 ..     206     224 .. 0.90

  Alignments for each domain:
  == domain 1    score: 2.8 bits;  conditional E-value: 0.091
   TIGR03348 116 viGppGsGKTtll 128
                 ++Gp+GsGKTtl+
  MMETSP1137-20121227|5036_1  86 LLGPSGSGKTTLM 98 
                 79*********97 PP

  == domain 2    score: 3.2 bits;  conditional E-value: 0.071
   TIGR03348 116 viGppGsGKTtllk 129
                 ++Gp+GsGKTtl++
  MMETSP1137-20121227|5036_1 207 LLGPSGSGKTTLMD 220
                 79*********975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (735 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       258  (0.0628961); expected 82.0 (0.02)
Passed bias filter:                      205  (0.0499756); expected 82.0 (0.02)
Passed Vit filter:                       108  (0.0263286); expected 4.1 (0.001)
Passed Fwd filter:                        81  (0.0197465); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              81  [number of targets reported over threshold]
# CPU time: 1.95u 0.23s 00:00:02.18 Elapsed: 00:00:01.49
# Mc/sec: 651.09
//
Query:       MMETSP1137-20121227|5037_1  [L=412]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   8.9e-106  351.7   0.0     1e-105  351.4   0.0    1.0  1  TIGR00528 gcvT: glycine cleavage system T protein
    2.4e-43  145.9   0.2      3e-43  145.6   0.2    1.0  1  TIGR01372 soxA: sarcosine oxidase, alpha subunit family
     0.0037   15.0   0.0      0.016   12.9   0.0    2.0  2  TIGR01375 soxG: sarcosine oxidase, gamma subunit family
  ------ inclusion threshold ------
      0.032   12.2   0.0      0.072   11.0   0.0    1.6  1  TIGR01158 SUI1_rel: putative translation initiation factor SUI1


Domain annotation for each model (and alignments):
>> TIGR00528  gcvT: glycine cleavage system T protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  351.4   0.0    1e-108    1e-105       1     361 [.      35     405 ..      35     406 .. 0.92

  Alignments for each domain:
  == domain 1    score: 351.4 bits;  conditional E-value: 1e-108
   TIGR00528   1 lkrtpLydlhtelggklvdfaGwelPvqy.kslieeheavrtkaGlfDvshmgkvelsGskslkfLqrllanDvdaLtkGkaqysvllnaqGGvvDDlivykegednrfllvvnaataekDlewlkehleeevtl..dtlskei...sllalqGPkaktiledlldkaveglkefffvqeaelalkkaliartGytGedGfeiavaneka.....velwkklveaygvkPiGLgarDtLrleagmaLyGqeldeeitPleaglgwvvkker..kksdfiGravleeqkeng.tekklvGlemlekgiarnelkvlltngekevGivtsGtlsPtLgknialayvdkelekiGtklevevrnklvkikvvkklfvr 361
                 l++tpL+  h++lg+k+  f+Gw +P+qy  +++++h  +r+kaGlfDvshm+ v ++G + ++f+++l  +D++a++ G + +sv+ na+GG++DD i+++ g+   +++v+na+  +kD  ++++hl+e+v    d   +++    +lalqGP+a+++l+ l++ +++++  ++ +   e+a++++++ar+GytGedGfeiav++ ++     v lw++l+++  v P+GLgarD+Lrleag++LyG++ld++++P+e +l wv++k r  +   f+G + +    +n+ + +k+ G+++ +    r++  v+  ++ ++vG+ tsG +sP L+k i++ yv+ +l k Gt+l  evr+k+ ki ++k++fv+
  MMETSP1137-20121227|5037_1  35 LRKTPLHPVHVSLGAKMAAFGGWDMPIQYpDGIMKSHLHTREKAGLFDVSHMLGVVVRGADRVAFMESLCVADIKAIPAGMGGLSVITNADGGIIDDCIITNAGDH--LYMVINAGHEDKDIPHMEKHLKEFVAKggDASVETLpdnGILALQGPEAAKVLQTLTKTDLSQMSFMAAM-PMEVAGQQCFVARSGYTGEDGFEIAVPKGSGathgvVTLWEALMAHEDVMPVGLGARDSLRLEAGLCLYGNDLDDTTSPVEGTLLWVIAKRRrdEPGSFVGSERILSELANKsATRKRAGFVVPAGAPVREGTAVFD-EAGEKVGVTTSGGFSPCLKKGIGMCYVKPGLIKAGTELFAEVRGKKQKIVITKMPFVE 405
                 589**************************5588***********************************************************************99..9**********************98762233333336669************************988887.99************************987652222257****************************************************99444579****998877777615667******99999*********.5559****************************************************96 PP

>> TIGR01372  soxA: sarcosine oxidase, alpha subunit family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  145.6   0.2     3e-46     3e-43     594     990 ..      20     407 ..      15     411 .. 0.87

  Alignments for each domain:
  == domain 1    score: 145.6 bits;  conditional E-value: 3e-46
   TIGR01372 594 alagarrgelle..paRktplhswakenGAvfedvGqWkRaayypkkGedmdeavarEakavResvgllDastLGkievvGpdAaeFlnrvYtnafskLkvGkaRYGlmlredGlvfDDGvtlrlaedrflvttttakaarvlehlEeylqtefpelkvtltsvtdqwatlavaGPkarkllaevvegldlsneafpfmsikevklagvearlfRisFsGelayEvavpadyge.....kvwealleagkefgivpyGtEalhvlRaEkGfiivgqdtdgtvtpaDlglewavskkkkd....fvGkrsleredlvredRkqlvgllpkdreekleeGaqivadeaeatplksqGyvtssylspalgrtiaLAlvkgGraRlGetvkvpkagrliaveisslvffDpe 990
                 a+aga rg   +    Rktplh ++   GA +   G W  +  yp         + +   ++Re +gl+D+s +  + v+G d ++F++ + +   + +  G+    ++ ++dG + DD +++   + + ++   +++  + + h+E++l+    +       +  +   la++GP+a+k+l+++++ +dls+  + fm++  +++ag +  ++R  ++Ge ++E+avp   g      ++weal++   + +++p G+ a   lR E G  + g+d+d t+ p +  l w+++k+++d    fvG+  +  e + ++  ++  g ++    ++++eG+++  + a +    ++G  ts  +sp l + i++  vk G  + G+++ +++ g+  ++ i+++ f++++
  MMETSP1137-20121227|5037_1  20 AFAGAVRGYAAAtgELRKTPLHPVHVSLGAKMAAFGGWDMPIQYPD-------GIMKSHLHTREKAGLFDVSHMLGVVVRGADRVAFMESLCVADIKAIPAGMGGLSVITNADGGIIDDCIITNAGD-HLYMVINAGHEDKDIPHMEKHLKEFVAKGGDASVETLPDNGILALQGPEAAKVLQTLTK-TDLSQ--MSFMAAMPMEVAGQQCFVARSGYTGEDGFEIAVPKGSGAthgvvTLWEALMA---HEDVMPVGLGARDSLRLEAGLCLYGNDLDDTTSPVEGTLLWVIAKRRRDepgsFVGSERILSELANKSATRKRAGFVVPA-GAPVREGTAVFDE-AGE----KVGVTTSGGFSPCLKKGIGMCYVKPGLIKAGTELFAEVRGKKQKIVITKMPFVEQK 407
                 6778777755441157*****************************5.......57788899***********888899******************************************9998665.5667788999999********99988887666667777889*****************9.89985..789******************************9766642111246666665...579******************************************99877788***988888877777777777777776.48*****986554.444....69************************************************998765 PP

>> TIGR01375  soxG: sarcosine oxidase, gamma subunit family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.0      0.23   2.4e+02      67     117 ..      76     123 ..      65     133 .. 0.78
   2 !   12.9   0.0   1.6e-05     0.016      57     136 ..     158     238 ..     108     254 .. 0.71

  Alignments for each domain:
  == domain 1    score: -0.6 bits;  conditional E-value: 0.23
   TIGR01375  67 elhavvdlSggrtaleisGpkaeevLakgcavdlslsafpvgaarrtifak 117
                 e + + d+S+    + + G+   + +++ c +d++   +p g +  +++ +
  MMETSP1137-20121227|5037_1  76 EKAGLFDVSHMLG-VVVRGADRVAFMESLCVADIKA--IPAGMGGLSVITN 123
                 5667788888754.5689999999999999999988..8988887777766 PP

  == domain 2    score: 12.9 bits;  conditional E-value: 1.6e-05
   TIGR01375  57 aaalaaalteelhavvdlSggrtaleisGpkaeevLakgcavdlslsafpvgaarrtifakvevvltr...tgedtfeilvlr 136
                 +++l + +++   a v+    +  l ++Gp+a++vL+  +  dls   f   aa+   +a+ ++ + r   tged fei v +
  MMETSP1137-20121227|5037_1 158 EKHLKEFVAKGGDASVETLPDNGILALQGPEAAKVLQTLTKTDLSQMSFM--AAMPMEVAGQQCFVARsgyTGEDGFEIAVPK 238
                 333333334333466666678899*********************96665..6666667777777777555789999999865 PP

>> TIGR01158  SUI1_rel: putative translation initiation factor SUI1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0     7e-05     0.072      49      95 ..     149     201 ..     125     206 .. 0.83

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 7e-05
   TIGR01158  49 lsdidlkelakeLKskcacGGtv......kdgviElQGdhrekvkelLekkgf 95 
                 ++d d+ ++ k+LK+++a GG +       +g + lQG +  kv + L+k   
  MMETSP1137-20121227|5037_1 149 HEDKDIPHMEKHLKEFVAKGGDAsvetlpDNGILALQGPEAAKVLQTLTKTDL 201
                 56889999*************6533333458999**************99865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (412 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       114  (0.0277913); expected 82.0 (0.02)
Passed bias filter:                       99  (0.0241346); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.36u 0.19s 00:00:00.55 Elapsed: 00:00:00.47
# Mc/sec: 1157.01
//
Query:       MMETSP1137-20121227|5038_1  [L=164]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (164 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        78  (0.0190151); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.16s 00:00:00.32 Elapsed: 00:00:00.33
# Mc/sec: 655.95
//
Query:       MMETSP1137-20121227|5040_1  [L=426]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (426 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       113  (0.0275475); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.14s 00:00:00.42 Elapsed: 00:00:00.38
# Mc/sec: 1479.67
//
Query:       MMETSP1137-20121227|5041_1  [L=305]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.9e-08   31.4   0.0    3.9e-08   30.4   0.0    1.4  2  TIGR01941 nqrF: NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit
    4.6e-08   30.2   0.0    6.6e-08   29.7   0.0    1.2  1  TIGR03224 benzo_boxA: benzoyl-CoA oxygenase/reductase, BoxA protein
    3.2e-07   27.3   0.0    5.3e-07   26.6   0.0    1.4  1  TIGR02160 PA_CoA_Oxy5: phenylacetate-CoA oxygenase/reductase, PaaK subunit
      4e-05   20.7   0.0    5.4e-05   20.2   0.0    1.2  1  TIGR02911 sulfite_red_B: sulfite reductase, subunit B
    0.00023   17.7   0.0    0.00031   17.3   0.0    1.1  1  TIGR01931 cysJ: sulfite reductase [NADPH] flavoprotein, alpha-component


Domain annotation for each model (and alignments):
>> TIGR01941  nqrF: NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0      0.62   5.1e+02     134     168 ..      74     109 ..      70     113 .. 0.73
   2 !   30.4   0.0   4.8e-11   3.9e-08     272     399 ..     180     302 ..     119     304 .. 0.75

  Alignments for each domain:
  == domain 1    score: -2.9 bits;  conditional E-value: 0.62
   TIGR01941 134 visndnvatfikelvlklpegesvefk.aGgyiqie 168
                 v++    a+ ++ + +++pe+ +  ++ +G y+q++
  MMETSP1137-20121227|5041_1  74 VVASAPAAAEMQCIRVQVPEETAAGYQtPGQYVQMR 109
                 555555666677888999999999887368899986 PP

  == domain 2    score: 30.4 bits;  conditional E-value: 4.8e-11
   TIGR01941 272 elvfigGGaGmaplrshildll..krlkskrkisfwyGarskrevfyeedfdeleaendnfkyhvalsdplpednwtGytgfihnvlyenylkdhdapediefymcGpplmnaaviklledlGverenil 399
                 ++v+ + G+G+ap+r+ i ++    rl   rk  ++yGar+ +++ y+++fde ++    +   v+    +p+  w+G  g++ +v     +   + p ++   +cG   m+  v+ l  + Gv +  +l
  MMETSP1137-20121227|5041_1 180 QVVMFAIGSGIAPIRAAIEQKGdgLRLADGRKAVLYYGARTPEQMAYQDKFDEWAK----LGVEVVPVMSQPDASWKGASGYVQDVAKAAGI---ERPRNTGVLLCGNKEMSIDVKALCAEAGVFEGRVL 302
                 46777889**********887522577899*********************98665....667788888899*************9877655...6799999*********************9776665 PP

>> TIGR03224  benzo_boxA: benzoyl-CoA oxygenase/reductase, BoxA protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.7   0.0     8e-11   6.6e-08     237     378 ..     140     287 ..     130     300 .. 0.75

  Alignments for each domain:
  == domain 1    score: 29.7 bits;  conditional E-value: 8e-11
   TIGR03224 237 asnylcdlkkgdkvqvigpfgstflmp........nhpessilmictgtgsapmramterrrrrrakgeggklllffgartkeelpyfgplqklpkdfidinfafsrtpee...pkryvqdaireraadvaallkddntyiyvcglkgmeegv 378
                 a+ +l d+k g+ +q+   +g  f +         + p  +++m   g+g ap+ra  e++   ++ + g k +l++gart+e++ y   + +  k  +++   +s+          yvqd  +      a + +  nt + +cg k m   v
  MMETSP1137-20121227|5041_1 140 AAKWLTDIKVGETLQMSQVMGGGFKIKqsfdsldyDFPCLQVVMFAIGSGIAPIRAAIEQKGDGLRLADGRKAVLYYGARTPEQMAYQDKFDEWAKLGVEVVPVMSQPDASwkgASGYVQDVAKA-----AGIERPRNTGVLLCGNKEMSIDV 287
                 67899999999999988888887766511111111456669**********************999999******************99888888888888777776544411145699987543.....34456678888888888886554 PP

>> TIGR02160  PA_CoA_Oxy5: phenylacetate-CoA oxygenase/reductase, PaaK subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.6   0.0   6.4e-10   5.3e-07       7     234 ..      75     299 ..      69     304 .. 0.73

  Alignments for each domain:
  == domain 1    score: 26.6 bits;  conditional E-value: 6.4e-10
   TIGR02160   7 aevrrltadaveisfevPeelaedyrfepGqhltlkaeldGeelrrs.ysicdav.adgeirvavkkieGGlfstwaneeiraGdtlevmaP.qGrftskldaer......akhyvavaaGsGitPilaivktv...laaepkstftlvyanrrsasvmfaeeladlkdkypqrfallhvlsreereaellsGrldgeklkalldslievdevdeaflcGPaalvddaedalkalGvdse 234
                  +    +a+   i+ +vPee a+ y+ +pGq++++++   G++ +   +++ +++ +++e    +k+ e    ++w+++ i++G+tl++ +   G f+ k + ++        + v++a GsGi+Pi a ++     l   +  +  l y+ r+ +++ +++++++        ++++ v+s+ +   +  sG + +       ++ ie  +   + lcG +++  d+++    +Gv ++
  MMETSP1137-20121227|5041_1  75 VASAPAAAEMQCIRVQVPEETAAGYQ-TPGQYVQMRS---GDDAKPGfFAMASSPgSGDEFEFLIKEKEA---AKWLTD-IKVGETLQMSQVmGGGFKIKQSFDSldydfpCLQVVMFAIGSGIAPIRAAIEQKgdgLRLADGRKAVLYYGARTPEQMAYQDKFDEWAK---LGVEVVPVMSQPDASWKGASGYVQDVA----KAAGIERPRNTGVLLCGNKEMSIDVKALCAEAGVFEG 299
                 45555667777899***********8.7******997...666655415666666245688999999886...678875.9******9875515789999999998888887899************99988643338888999999*************999876543...345667777777777776666665532....2334555666666777777777777666666666555 PP

>> TIGR02911  sulfite_red_B: sulfite reductase, subunit B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   0.0   6.6e-08   5.4e-05      72     201 ..     143     283 ..     101     301 .. 0.79

  Alignments for each domain:
  == domain 1    score: 20.2 bits;  conditional E-value: 6.6e-08
   TIGR02911  72 evfelkegdklflrgpygngfdvdnykdk........elvvvaggtgvapvkgvveyfaknsk..evkeldlivgfktredilfkedlaewke.kinlvltldeaeeddkykvglvtkyiaelklkdieevqvivvgppim 201
                  + ++k+g++l +    g gf++++  d         ++v+ a g+g+ap++  +e   +  +  + ++  l  g +t+e++ ++++++ew +  +++v  + + ++  k+  g v +  +   ++   +  v++ g   m
  MMETSP1137-20121227|5041_1 143 WLTDIKVGETLQMSQVMGGGFKIKQSFDSldydfpclQVVMFAIGSGIAPIRAAIEQKGDGLRlaDGRKAVLYYGARTPEQMAYQDKFDEWAKlGVEVVPVMSQPDASWKGASGYVQDVAKAAGIERPRNTGVLLCGNKEM 283
                 567788999999999999999986533221122222278999***************9998762155667788899***************87357888889999************999999998888888888886654 PP

>> TIGR01931  cysJ: sulfite reductase [NADPH] flavoprotein, alpha-component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.0   3.8e-07   0.00031     452     562 ..     180     289 ..     171     301 .. 0.69

  Alignments for each domain:
  == domain 1    score: 17.3 bits;  conditional E-value: 3.8e-07
   TIGR01931 452 piimigpGtGvaPfraflqeree..egaeGknWlffGnphfaeDfLYqveWqkylkkgv.....ltkldlafsrDqkekiYvqdrlreqgkelfeWlqeGahiYvCGdakkmakDvek 562
                 +++m + G G+aP ra ++++ +  + a+G++ +++   +  e   Yq  + ++ k gv     + + d ++   +    Yvqd  ++ g e  +  + G  + +CG +k+m+ Dv++
  MMETSP1137-20121227|5041_1 180 QVVMFAIGSGIAPIRAAIEQKGDglRLADGRKAVLYYGARTPEQMAYQDKFDEWAKLGVevvpvMSQPDASW---KGASGYVQDVAKAAGIE--RPRNTG--VLLCG-NKEMSIDVKA 289
                 69******************9873457***876555555668889**********99852211122222222...33345888876666555..333444..66777.5667777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (305 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       119  (0.0290102); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.31u 0.17s 00:00:00.48 Elapsed: 00:00:00.44
# Mc/sec: 914.92
//
Query:       MMETSP1137-20121227|5042_1  [L=187]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (187 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       119  (0.0290102); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.16s 00:00:00.36 Elapsed: 00:00:00.32
# Mc/sec: 771.31
//
Query:       MMETSP1137-20121227|5043_1  [L=335]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (335 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       133  (0.0324232); expected 82.0 (0.02)
Passed bias filter:                      118  (0.0287665); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.16s 00:00:00.42 Elapsed: 00:00:00.42
# Mc/sec: 1052.77
//
Query:       MMETSP1137-20121227|5046_1  [L=450]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (450 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        59  (0.0143832); expected 82.0 (0.02)
Passed bias filter:                       38  (0.00926377); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.16s 00:00:00.46 Elapsed: 00:00:00.51
# Mc/sec: 1164.61
//
Query:       MMETSP1137-20121227|5047_1  [L=328]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (328 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       100  (0.0243784); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.11s 00:00:00.37 Elapsed: 00:00:00.38
# Mc/sec: 1139.27
//
Query:       MMETSP1137-20121227|5049_1  [L=1395]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   1.4e-102  342.1   0.0    1.8e-84  282.4   0.0    2.8  2  TIGR01536 asn_synth_AEB: asparagine synthase (glutamine-hydrolyzing)
    9.3e-63  210.7   0.0    7.8e-39  131.7   0.0    3.1  3  TIGR03108 eps_aminotran_1: exosortase A system-associated amidotransferase 1
    1.5e-58  196.3   0.1    1.5e-30  103.9   0.0    3.2  3  TIGR03104 trio_amidotrans: asparagine synthase family amidotransferase
    6.7e-43  144.6   0.0    1.3e-42  143.7   0.0    1.3  1  TIGR00338 serB: phosphoserine phosphatase SerB
      2e-25   87.6   0.2    4.7e-25   86.4   0.0    1.7  2  TIGR01488 HAD-SF-IB: HAD phosphoserine phosphatase-like hydrolase, family IB
    1.2e-12   46.1   0.0    2.2e-12   45.3   0.0    1.4  1  TIGR01489 DKMTPPase-SF: 2,3-diketo-5-methylthio-1-phosphopentane phosphatase
    4.1e-11   40.7   0.0    7.8e-11   39.8   0.0    1.4  1  TIGR01134 purF: amidophosphoribosyltransferase
    2.6e-07   28.9   0.0    6.1e-07   27.7   0.0    1.6  1  TIGR01490 HAD-SF-IB-hyp1: HAD hydrolase, family IB
    1.2e-06   26.2   0.0    2.4e-06   25.2   0.0    1.4  1  TIGR01491 HAD-SF-IB-PSPlk: phosphoserine phosphatase-like hydrolase, archaeal
    7.5e-06   23.9   0.0    1.5e-05   22.9   0.0    1.4  1  TIGR03333 salvage_mtnX: 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase
    2.2e-05   22.3   0.4       0.11   10.2   0.0    2.4  2  TIGR01487 SPP-like: SPP-like hydrolase, Archaeal
    0.00019   18.6   0.0    0.00038   17.6   0.0    1.4  1  TIGR00552 nadE: NAD+ synthetase
     0.0015   14.9   0.0     0.0027   14.1   0.0    1.3  1  TIGR01135 glmS: glutamine-fructose-6-phosphate transaminase (isomerizing)
  ------ inclusion threshold ------
      0.027   11.9   0.0      0.097   10.0   0.0    1.8  2  TIGR00364 TIGR00364: queuosine biosynthesis protein QueC
      0.079   10.8   0.0        2.1    6.2   0.1    2.6  2  TIGR01484 HAD-SF-IIB: HAD hydrolase, family IIB
       0.12    9.7   0.0        1.7    5.9   0.0    2.6  3  TIGR00099 Cof-subfamily: Cof-like hydrolase


Domain annotation for each model (and alignments):
>> TIGR01536  asn_synth_AEB: asparagine synthase (glutamine-hydrolyzing)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  282.4   0.0   7.1e-87   1.8e-84       1     384 [.      52     407 ..      52     419 .. 0.90
   2 !   57.2   0.1   1.3e-18   3.3e-16     441     515 ..     411     489 ..     404     491 .. 0.87

  Alignments for each domain:
  == domain 1    score: 282.4 bits;  conditional E-value: 7.1e-87
   TIGR01536   1 CgiagivdlkakakeeeeaikemletlahRGPDaegvwkdekeenailghrRLaiidlsegaQPlsnek.evvivfnGEIYNheeLreele....ekG...yeFetksDtEViLaayeewgeelverLeGmFAfalwdekkgelflaRDrlGikPLYyaseqgkllfaSEiKallalk.eikaeldkealaelltlqlvptektlfkevkelepakaldgeekleeywevekeevkeseeelveelrelledavkkrlvadvpvgvllSGGlDSslvaaiakkeak.sevktFsigfedskdldeskaarkvadelgtehkevliseeevlkeleevilale..eptairasiplyllsklarekgvkVvLsGeGaDElfgGYeyfreakaeeale 384
                 Cgi++++d++ + +e e+  ke++ +l+hRGPD+ g +      + +lgh+RL+i+d  +g+QPl +++  +++++nGEIYNh +Lr++      ++G   yeF+t sD+E +L  +e +ge ++++L+GmF ++ + +  +++++ RD+ GikPLY    +g+++faSE+K+l+    ++++++++++ +++ +++   ++k +   +  +ep++    +                     ++++re+l+ av+krl++dv +g+llSGGlDS +v+ ++++  + s++k+F++g+++s+d+    aar+va+ +gt+h+e+l+++ee+++ +++vi++le  ep a++ + p+          ++kVvL+GeGaDElf+GY yfr+ +++ea++
  MMETSP1137-20121227|5049_1  52 CGILAVFDSRIDDDEMEKLTKELTCLLEHRGPDEVG-YXG--GPGFGLGHARLSIMDPAAGHQPLVSKAtGAAVIHNGEIYNHAKLRARTAkeraAAGkplYEFQTGSDSEAVLPFFEDLGEGVISQLDGMFTVIAVSADGEQVVVGRDPCGIKPLYT---DGRVIFASELKCLVGQVeQVEEFPPGHYWTPQKGYVRYFQPKWMTPLLDPAEPIELP--TG-------------------GTNKIRETLKMAVEKRLMSDVDYGLLLSGGLDSAIVCKLMSELTDmSKIKSFTVGMANSPDVT---AARAVAEVFGTDHYEYLFTPEEAFSIVPKVIYHLEtyEPXADPLVHPT----------HLKVVLTGEGADELFAGYLYFRDCPSREAMQ 407
                 *********999888889******************.565..589***********************9989***************866411114567779******************************************************96...577***********8777******************666677776666666666664..22...................23469***************************************9999***************...***********************************8888877766665..........589************************9998 PP

  == domain 2    score: 57.2 bits;  conditional E-value: 1.3e-18
   TIGR01536 441 rldlelllsdllrakDrvsmahslEvRvPflDkelvelal.sippelklr..dgkeKvlLreaaee.llPeeileRkKe 515
                  +    l++ +l+++Dr+ mah++E+RvPflD e++++a+ +++p +k++  + +eK+ Lre++++  +P+++++R K+
  MMETSP1137-20121227|5049_1 411 IRIYDALHNVNLQRSDRMGMAHGVEARVPFLDVEMLRMAYeEVDPAIKMHseARMEKFCLRELFDDgDIPQDVVWRTKA 489
                 5556678899**************************998736***9999977899***********99********997 PP

>> TIGR03108  eps_aminotran_1: exosortase A system-associated amidotransferase 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  131.7   0.0     3e-41   7.8e-39       1     169 [.      51     222 ..      51     232 .. 0.92
   2 !   56.2   0.0   2.1e-18   5.4e-16     238     385 ..     265     405 ..     223     414 .. 0.75
   3 !   19.5   0.0   2.8e-07   7.1e-05     497     559 ..     423     489 ..     417     519 .. 0.82

  Alignments for each domain:
  == domain 1    score: 131.7 bits;  conditional E-value: 3e-41
   TIGR03108   1 mcGiagifdlegkreidrellkrmnealahrGPdeegvhvepGiglghrrlsiidlaggkqPlanedgsvvvvfnGeiynfkelv....kelealG...hqfrtksdtevivhaWeeWGedcverlrGmfafalwdrkketlflardrlgvkPlyyalledGalifgselkallah 169
                 mcGi ++fd + + +  ++l k+++  l hrGPde g+   pG glgh rlsi+d a+g+qPl+++   ++v++nGeiyn+++l+    ke  a+G   ++f+t sd e ++  +e+ Ge  +++l Gmf+ +      e++++ rd  g+kPly+    dG++if+selk+l+ +
  MMETSP1137-20121227|5049_1  51 MCGILAVFDSRIDDDEMEKLTKELTCLLEHRGPDEVGYXGGPGFGLGHARLSIMDPAAGHQPLVSKATGAAVIHNGEIYNHAKLRartaKERAAAGkplYEFQTGSDSEAVLPFFEDLGEGVISQLDGMFTVIAVSADGEQVVVGRDPCGIKPLYT----DGRVIFASELKCLVGQ 222
                 9***********999999999**************************************************************972222456678855569*****************************************************96....9***********9865 PP

  == domain 2    score: 56.2 bits;  conditional E-value: 2.1e-18
   TIGR03108 238 eleeelierlkeavelrlvadvPlGaflsGGvdssavvallaklsee.Pvktcsiafddaafdeaeyakkvaeryktehkvetve.addfdlvdrlaglyd..ePfadssalPtyrvcelarkrvtvalsGdGgdelfaGyrryrlhlaeer 385
                   ++++ e lk ave rl++dv  G +lsGG+ds+ v  l+++l++   +k+ ++++ +    + + a++vae ++t+h+    + +++f+ v +++   +  eP ad    Pt         +++v+l+G+G+delfaGy  +r     e+
  MMETSP1137-20121227|5049_1 265 GGTNKIRETLKMAVEKRLMSDVDYGLLLSGGLDSAIVCKLMSELTDMsKIKSFTVGMAN--SPDVTAARAVAEVFGTDHYEYLFTpEEAFSIVPKVIYHLEtyEPXADPLVHPT---------HLKVVLTGEGADELFAGYLYFRDCPSREA 405
                 45678999***********************************9985268888888765..567889************9887651678****99876543449****999998.........78****************98886554444 PP

  == domain 3    score: 19.5 bits;  conditional E-value: 2.8e-07
   TIGR03108 497 tkvdrasmavglevrvPlldhrlvewaa.klpsslklrg..aeGkyllkkalep.ylpedvlyrkkm 559
                  + dr  ma+g+e+rvP+ld +++ +a  ++   +k+++  +  k+ l+  ++   +p+dv++r+k 
  MMETSP1137-20121227|5049_1 423 QRSDRMGMAHGVEARVPFLDVEMLRMAYeEVDPAIKMHSeaRMEKFCLRELFDDgDIPQDVVWRTKA 489
                 578*********************99852688888887611568*****9997538********995 PP

>> TIGR03104  trio_amidotrans: asparagine synthase family amidotransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  103.9   0.0   5.7e-33   1.5e-30       1     167 [.      51     221 ..      51     234 .. 0.85
   2 !   63.1   0.0   1.2e-20   3.1e-18     242     386 ..     267     400 ..     249     419 .. 0.86
   3 !   25.4   0.1   3.2e-09   8.3e-07     457     518 ..     422     488 ..     409     492 .. 0.83

  Alignments for each domain:
  == domain 1    score: 103.9 bits;  conditional E-value: 5.7e-33
   TIGR03104   1 mcGiaGelrfdgraad..vaa.vermaaelakrGPdaeGvfaqgkvalGhrrlkiidlseasqqPmvdaelglalvfnGaiynykelre....elealG...yrffsegdtevilkayhawGeelvsrleGmfafaiwerdsgrlllardrlGikPlylaedekrlrfasslpalla 167
                 mcGi     fd r+ d  +++  ++++  l++rGPd++G       +lGh rl+i+d  +a++qP+v +++g a+++nG iyn+++lr+    e  a+G   y+f + +d+e +l  +++ Ge ++s+l Gmf++  +  d ++++++rd  GikPly    ++r+ fas+l+ l+ 
  MMETSP1137-20121227|5049_1  51 MCGILA--VFDSRIDDdeMEKlTKELTCLLEHRGPDEVGYXGGPGFGLGHARLSIMDP-AAGHQPLVSKATGAAVIHNGEIYNHAKLRArtakERAAAGkplYEFQTGSDSEAVLPFFEDLGEGVISQLDGMFTVIAVSADGEQVVVGRDPCGIKPLYT---DGRVIFASELKCLVG 221
                 888875..45655544112231345677789**************************6.589*************************9622226667777789*******************************************************5...6899*******9985 PP

  == domain 2    score: 63.1 bits;  conditional E-value: 1.2e-20
   TIGR03104 242 kdavlealrlavkrrlvadvpvGvllsGGldssllvallaeag.vedlktfsvGfedvggekgdefeysdliaerfetrhhkllipeeevlealpeavaamsePmvshdavafyllseevskevkvvqsGqGadevfaGyhwyPkl 386
                 +++++e+l++av++rl++dv+ G llsGGlds+++  l++e + ++++k+f+vG+ + +++ +     +  +ae f t+h ++l + ee ++ +p+ + ++       d +           + kvv +G Gade+faGy ++   
  MMETSP1137-20121227|5049_1 267 TNKIRETLKMAVEKRLMSDVDYGLLLSGGLDSAIVCKLMSELTdMSKIKSFTVGMANSPDVTA-----ARAVAEVFGTDHYEYLFTPEEAFSIVPKVIYHLETYEPXADPLV----H---PTHLKVVLTGEGADELFAGYLYFRDC 400
                 5789************************************9752789********99998776.....679***************************99876555566543....2...579*****************998655 PP

  == domain 3    score: 25.4 bits;  conditional E-value: 3.2e-09
   TIGR03104 457 vkrvdnmtmawGlearvPfldhelvelaa.riPaelklkdeG...klvlkei.arkviPsevidrpk 518
                 ++r d m ma G+earvPfld e+  +a  ++ +++k+++e    k+ l+e+   + iP++v+ r k
  MMETSP1137-20121227|5049_1 422 LQRSDRMGMAHGVEARVPFLDVEMLRMAYeEVDPAIKMHSEArmeKFCLRELfDDGDIPQDVVWRTK 488
                 6899***********************97368999**998753337899987245789999999988 PP

>> TIGR00338  serB: phosphoserine phosphatase SerB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  143.7   0.0   4.9e-45   1.3e-42       7     204 ..    1128    1333 ..    1122    1347 .. 0.86

  Alignments for each domain:
  == domain 1    score: 143.7 bits;  conditional E-value: 4.9e-45
   TIGR00338    7 lskllkkkklvvfDlDstlieeEvIdeiaklaGveeeVseiTerAmrgeldFkeslreRvkllkglpve..llkkveek.lelteGveelvkkLkekgykvaviSGgFdlvaeklkekLglda..vfaNrLeve.dgkltGkvegeivdesakaktllkllekegislektvavGDGanDlsm...ikaAglgiafnakpvlkekad 204 
                   +  l + ++v++D+Dst+i++E+I e+a   Gv++ V+e+T +Am g+++F+e+lr+R++l+++++ +  ++++ +++   l +Gv e+++ ++ +g++v+ +SGgF++++e ++e  g+d   + +N+L ++ dg +  +   e+++   ++k ++ +  k++  ++k+v++GDGa+D+++   ++ A+++i+f + +v+ ++ d
  MMETSP1137-20121227|5049_1 1128 AKAALLQCDAVCLDVDSTVITHEIIVEMAEDLGVGDRVREMTLKAMGGDVPFHEALRSRLALMRPSESDleDMREKHDPaKMLSPGVLETIRLMQARGVRVFFVSGGFRQMIEPIAEACGVDKtdIYSNTLLFHaDGSFKCHCPQEPTSRA-GGKAKVVVDLKKEYGFKKVVMIGDGATDMEArdvVDGADAFIGFGGCKVRSKVLD 1333
                  5566778899******************************************************987663344444444145789*************************************9889*******99********99999876.666666666666666789***********97333778********9998887765 PP

>> TIGR01488  HAD-SF-IB: HAD phosphoserine phosphatase-like hydrolase, family IB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0       3.8   9.7e+02     162     175 ..     505     518 ..     503     520 .. 0.84
   2 !   86.4   0.0   1.8e-27   4.7e-25       1     174 [.    1137    1310 ..    1137    1313 .. 0.88

  Alignments for each domain:
  == domain 1    score: -2.6 bits;  conditional E-value: 3.8
   TIGR01488 162 iavGDsvnDlpllk 175
                 +++GD v+D +++ 
  MMETSP1137-20121227|5049_1 505 AMCGDVVSDAEFAD 518
                 69*******99875 PP

  == domain 2    score: 86.4 bits;  conditional E-value: 1.8e-27
   TIGR01488    1 laifDfDgTLtdqdsliellkkllgtndevkeltrlvlegrisfedrlgrrlkllerslleelak..eflakevairpgarelikwlkekGiklvivSggldflveklaeklgidk..vfanelelddnGlltgrieg.e.vnpsgeeKgkvlkelleeskedrkeiiavGDsvnDlpll 174 
                  ++++D+D+T++  + ++  +++ lg  d+v+e+t +++ g ++f ++l++rl+l + s+  +l++  e  +   +++pg+ e+i+ ++++G++++ vSgg++  +e++ae  g+dk  +++n l + ++G +    ++ + ++ +   K kv+  l++e +   k+++++GD+++D+++ 
  MMETSP1137-20121227|5049_1 1137 AVCLDVDSTVITHEIIV-EMAEDLGVGDRVREMTLKAMGGDVPFHEALRSRLALMRPSE-SDLEDmrEKHDPAKMLSPGVLETIRLMQARGVRVFFVSGGFRQMIEPIAEACGVDKtdIYSNTLLFHADGSFKC--HCpQePTSRAGGKAKVVVDLKKEYGF--KKVVMIGDGATDMEAR 1310
                  689************66.677777777*******************************8.66666335666666677*****************************************************9999..554438888889*****987777755..89***********997 PP

>> TIGR01489  DKMTPPase-SF: 2,3-diketo-5-methylthio-1-phosphopentane phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.3   0.0   8.7e-15   2.2e-12       5     180 ..    1139    1312 ..    1137    1318 .. 0.78

  Alignments for each domain:
  == domain 1    score: 45.3 bits;  conditional E-value: 8.7e-15
   TIGR01489    5 vsDFDgTIieqdsddwivdkfgkkeakrllkeslskdlsiefmdrlmkvLsseglke...deikevlksvp.idegvkefiefikekeidliviSdgnefFidavleaigvkdvfveiysNkasfdsdgrltvvnhkahgcssspkglcKgkvieklsek.kkekivyiGDgvsDvcpakl 180 
                    D D T+i ++ +  + + +g ++  r+   +   ++ ++f ++l   L     +e   ++++e    ++ + +gv+e i  ++++++++  +S+g    i+++ ea gv+   ++iysN   f+ dg +    ++  + +s   g  K kv+  l+++ + +k+v+iGDg +D+++   
  MMETSP1137-20121227|5049_1 1139 CLDVDSTVITHEIIVEMAEDLGVGDRVREMTLKAM-GGDVPFHEALRSRLALMRPSEsdlEDMREKHDPAKmLSPGVLETIRLMQARGVRVFFVSGGFRQMIEPIAEACGVDK--TDIYSNTLLFHADGSFKCHCPQ--EPTSRAGG--KAKVVVDLKKEyGFKKVVMIGDGATDMEARDV 1312
                  56889999998888888888888877777665555.678888877766665554444000555555555543799**************************************..***************9987777..65555555..78888888888799*************99765 PP

>> TIGR01134  purF: amidophosphoribosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.8   0.0     3e-13   7.8e-11      68     219 ..      96     239 ..      92     250 .. 0.77

  Alignments for each domain:
  == domain 1    score: 39.8 bits;  conditional E-value: 3e-13
   TIGR01134  68 agHvRYsTaGsskseeaqPlvvssavgglalaHNGnlvnaeelreeleeeg.......rkfntssDsevllallaeeeeskeelekavaevlervkGaYalvlms..eeklvavrDPvGvrPLvlgrkedgyvvaSEsvAldlgaelvrdvepgevvvlkd 219
                  gH R s    +  +  qPlv +++  g a+ HNG++ n ++lr+++++e         +f+t sDse +l  ++             + v++++ G ++++++s   e++v+ rDP G++PL    +++  ++aSE   l  + e+v++  pg   + ++
  MMETSP1137-20121227|5049_1  96 LGHARLSIMDPA--AGHQPLVSKAT--GAAVIHNGEIYNHAKLRARTAKERaaagkplYEFQTGSDSEAVLPFFED---LG-------EGVISQLDGMFTVIAVSadGEQVVVGRDPCGIKPLYT--DGR-VIFASELKCLVGQVEQVEEFPPGHYWTPQK 239
                 689998888754..789****9777..58***************9887764444456668********99999974...22.......23456677888877665115789999*********99..333.69****99999888889*****98876554 PP

>> TIGR01490  HAD-SF-IB-hyp1: HAD hydrolase, family IB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.7   0.0   2.4e-09   6.1e-07      68     191 ..    1193    1314 ..    1163    1320 .. 0.86

  Alignments for each domain:
  == domain 1    score: 27.7 bits;  conditional E-value: 2.4e-09
   TIGR01490   68 keedvreiveevvnqkiesllypeardlikahkaeGhkvvlvSasleilvkplArklgidn..ligtrleeaedGiltGelegenl.kgeeKvkalaellaeekidlkesyaYsDsisDlpllslvg 191 
                  +e+d++++ e+  ++   ++l p ++++i+  +a+G +v+ vS+++ ++++p+A++ g+d+  +  + l    dG +      e + ++ +K+k +  l +e+ +  k++ + +D  +D++   +v+
  MMETSP1137-20121227|5049_1 1193 SESDLEDMREKHDPA---KMLSPGVLETIRLMQARGVRVFFVSGGFRQMIEPIAEACGVDKtdIYSNTLLFHADGSFKCHCPQEPTsRAGGKAKVVVDLKKEYGF--KKVVMIGDGATDMEARDVVD 1314
                  577888888888885...799**************************************85337899999*********99776651556799989888877776..8***********98766666 PP

>> TIGR01491  HAD-SF-IB-PSPlk: phosphoserine phosphatase-like hydrolase, archaeal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.2   0.0   9.3e-09   2.4e-06      86     185 ..    1215    1316 ..    1207    1326 .. 0.86

  Alignments for each domain:
  == domain 1    score: 25.2 bits;  conditional E-value: 9.3e-09
   TIGR01491   86 eevvrlLkekGlktavvsgGislLvkkvaeklqaDy..vlsnelvfdekGfvqpdg..ivrvivdkkgiavkrlkseLnaskeetvavGDskedasifevadla 185 
                   e +rl++ +G+++  vsgG   +++ +ae  ++D    +sn l+f  +G  + +    +      k ++v  lk+e +   +++v++GD   d+ +  v+d a
  MMETSP1137-20121227|5049_1 1215 LETIRLMQARGVRVFFVSGGFRQMIEPIAEACGVDKtdIYSNTLLFHADGSFKCHCpqEPTSRAGGKAKVVVDLKKEYGF--KKVVMIGDGATDMEARDVVDGA 1316
                  699******************************9973369**********99987611455566778899********99..99***********999998865 PP

>> TIGR03333  salvage_mtnX: 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.9   0.0   5.8e-08   1.5e-05       5     176 ..    1141    1314 ..    1137    1321 .. 0.72

  Alignments for each domain:
  == domain 1    score: 22.9 bits;  conditional E-value: 5.8e-08
   TIGR03333    5 dfdgtitendniisimkkfap.pewealkddvlskelsikegvgrlfsll.psslk.eeiidfllktaeiregfrefvafvnekeiplyvvsggldffvypllegl.vekeriycneadfsneyieiewphacdgecqndcglckpslirklsetddy..vvvigdsvtdleaaklad 176 
                  d d t+ + + i+++ +++   + ++++  + +  ++  +e +   + l+ ps+   e++ +       + +g  e + +++ +++ ++ vsgg+  ++ p+ e   v+k  iy n   f+++    ++   c +e +   g  k+ ++  l+++ ++  vv+igd  td+ea  + d
  MMETSP1137-20121227|5049_1 1141 DVDSTVITHEIIVEMAEDLGVgDRVREMTLKAMGGDVPFHEALRSRLALMrPSESDlEDMREKHDPAKMLSPGVLETIRLMQARGVRVFFVSGGFRQMIEPIAEACgVDKTDIYSNTLLFHADG---SFKCHCPQEPTSRAG-GKAKVVVDLKKEYGFkkVVMIGDGATDMEARDVVD 1314
                  667777777767766666653144556666667777777777644444442554331333333333445689*******************************98669************9875...456667777777666.5888999999999885569**********987766 PP

>> TIGR01487  SPP-like: SPP-like hydrolase, Archaeal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.2   0.0   0.00042      0.11      15      60 ..    1206    1251 ..    1201    1268 .. 0.88
   2 !    9.5   0.3   0.00068      0.18     147     182 ..    1280    1313 ..    1262    1318 .. 0.87

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 0.00042
   TIGR01487   15 knrlislraieairklekkGikvvlvtGnevkfvealavligvsga 60  
                  + +++s+ ++e ir ++ +G++v  v+G   +++e +a   gv+ +
  MMETSP1137-20121227|5049_1 1206 PAKMLSPGVLETIRLMQARGVRVFFVSGGFRQMIEPIAEACGVDKT 1251
                  67899*****************************999988888765 PP

  == domain 2    score: 9.5 bits;  conditional E-value: 0.00068
   TIGR01487  147 dKgvgvkklkellGlkkeevaaiGDsenDldlFrva 182 
                  +K + v  lk+ +G+kk  v++iGD+ +D+++  v+
  MMETSP1137-20121227|5049_1 1280 GKAKVVVDLKKEYGFKK--VVMIGDGATDMEARDVV 1313
                  578889999*******9..***********997776 PP

>> TIGR00552  nadE: NAD+ synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.0   1.5e-06   0.00038       6      85 ..     267     345 ..     263     362 .. 0.82

  Alignments for each domain:
  == domain 1    score: 17.6 bits;  conditional E-value: 1.5e-06
   TIGR00552   6 veeledflkekvkksgakgvvlG..lSGGiDSavvaalavealgkeevlalilpesnqaseqdvqdalalveklgietkeik 85 
                 ++++++ lk  v+k+ ++ v +G  lSGG+DSa+v +l  e  +  ++    +   n+    dv++a+a++e +g  + e+ 
  MMETSP1137-20121227|5049_1 267 TNKIRETLKMAVEKRLMSDVDYGllLSGGLDSAIVCKLMSELTDMSKIKSFTVGMANS---PDVTAARAVAEVFGTDHYEYL 345
                 6899999****************555******************86655555554433...479*******99988777665 PP

>> TIGR01135  glmS: glutamine-fructose-6-phosphate transaminase (isomerizing)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.0     1e-05    0.0027      67     208 ..      95     230 ..      90     248 .. 0.77

  Alignments for each domain:
  == domain 1    score: 14.1 bits;  conditional E-value: 1e-05
   TIGR01135  67 gigHtRWaTHGkpteeNaHPHvdekgeiavvhNGiieNykelreelekkg.......vefkSdTDtEviahlieeelkeeedlleavqkalkklrGayalavldkdepeklvaarkesPLivglgegenfvaSdvtallevtrrvvvLe 208
                 g+gH+R +           P v++++  av+hNG i N+++lr +  k+        +ef+   D+E +   +e+  +           ++++l+G ++++ +++d  e++v+ r  + +     +g +++aS+ + l+  +++v  + 
  MMETSP1137-20121227|5049_1  95 GLGHARLSIMDPAA--GHQPLVSKATGAAVIHNGEIYNHAKLRARTAKERaaagkplYEFQTGSDSEAVLPFFEDLGE----------GVISQLDGMFTVIAVSADG-EQVVVGRDPCGIKPLYTDGRVIFASELKCLVGQVEQVEEFP 230
                 56666665543332..34589999999***************987655422233555899*******99999887554..........4799*******87776665.569999*9998888889**************9999987665 PP

>> TIGR00364  TIGR00364: queuosine biosynthesis protein QueC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.0   0.00038     0.097       4      54 ..     291     341 ..     290     346 .. 0.89
   2 ?   -2.2   0.0       2.2   5.6e+02     159     186 ..    1147    1174 ..    1143    1180 .. 0.83

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 0.00038
   TIGR00364   4 vlSGGlDSttvllialkegeeveavtFdYgqrhskElevAkkiaealgike 54 
                 +lSGGlDS++v  ++ +  +  ++ +F  g   s ++ +A+ +ae  g  +
  MMETSP1137-20121227|5049_1 291 LLSGGLDSAIVCKLMSELTDMSKIKSFTVGMANSPDVTAARAVAEVFGTDH 341
                 79*********999999888888889******************9988766 PP

  == domain 2    score: -2.2 bits;  conditional E-value: 2.2
   TIGR00364  159 ltKaeivklakelgkldlviketyscye 186 
                  +t + iv++a++lg+ d v + t++   
  MMETSP1137-20121227|5049_1 1147 ITHEIIVEMAEDLGVGDRVREMTLKAMG 1174
                  5667799************999988765 PP

>> TIGR01484  HAD-SF-IIB: HAD hydrolase, family IIB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.0      0.28        71      17      71 ..    1210    1263 ..    1204    1269 .. 0.82
   2 ?    6.2   0.1    0.0082       2.1     180     212 ..    1280    1310 ..    1275    1316 .. 0.89

  Alignments for each domain:
  == domain 1    score: 1.2 bits;  conditional E-value: 0.28
   TIGR01484   17 lseelieaLerlrealgvkvvivTGRslaeikellkqlnlelpliaengalieaq 71  
                  ls+ + e++   +++ gv+v++v+G   + i+++++  +++ + i +n  l++a+
  MMETSP1137-20121227|5049_1 1210 LSPGVLETIRLMQAR-GVRVFFVSGGFRQMIEPIAEACGVDKTDIYSNTLLFHAD 1263
                  677788877777888.9********999999999999999888777777777765 PP

  == domain 2    score: 6.2 bits;  conditional E-value: 0.0082
   TIGR01484  180 dKgkalqalleelnlkkeeilafGDsgNDeeml 212 
                  +K+k++ +l +e++   ++++ +GD+++D e+ 
  MMETSP1137-20121227|5049_1 1280 GKAKVVVDLKKEYG--FKKVVMIGDGATDMEAR 1310
                  79************..999**********9975 PP

>> TIGR00099  Cof-subfamily: Cof-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0       1.4   3.7e+02      54      86 ..     109     140 ..      98     143 .. 0.75
   2 ?    5.9   0.0    0.0068       1.7      15      71 ..    1208    1264 ..    1204    1270 .. 0.90
   3 ?   -0.5   0.0      0.64   1.6e+02     189     218 ..    1281    1308 ..    1273    1313 .. 0.81

  Alignments for each domain:
  == domain 1    score: -1.7 bits;  conditional E-value: 1.4
   TIGR00099  54 gld.plivanGaavvdengkeilykkpldldlve 86 
                 g++  +  a+Gaav+++   ei ++ +l +++++
  MMETSP1137-20121227|5049_1 109 GHQpLVSKATGAAVIHNG--EIYNHAKLRARTAK 140
                 566333448999999999..9****999988776 PP

  == domain 2    score: 5.9 bits;  conditional E-value: 0.0068
   TIGR00099   15 keispetkealaklrekGikvvlaTGRsykevkeilkelgldplivanGaavvdeng 71  
                  k +sp ++e+++ ++++G++v++++G   + +++i ++ g d + ++ + ++++  g
  MMETSP1137-20121227|5049_1 1208 KMLSPGVLETIRLMQARGVRVFFVSGGFRQMIEPIAEACGVDKTDIYSNTLLFHADG 1264
                  6789999*******************9999************999999999998775 PP

  == domain 3    score: -0.5 bits;  conditional E-value: 0.64
   TIGR00099  189 KgsalqslaeklgislenviaiGDseNDie 218 
                  K++ +  l +++g+  ++v++iGD+  D+e
  MMETSP1137-20121227|5049_1 1281 KAKVVVDLKKEYGF--KKVVMIGDGATDME 1308
                  88888888887776..579******99987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1395 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       112  (0.0273038); expected 82.0 (0.02)
Passed bias filter:                      103  (0.0251097); expected 82.0 (0.02)
Passed Vit filter:                        34  (0.00828864); expected 4.1 (0.001)
Passed Fwd filter:                        16  (0.00390054); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              16  [number of targets reported over threshold]
# CPU time: 1.07u 0.21s 00:00:01.28 Elapsed: 00:00:01.38
# Mc/sec: 1334.24
//
Query:       MMETSP1137-20121227|5051_1  [L=202]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (202 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       110  (0.0268162); expected 82.0 (0.02)
Passed bias filter:                      100  (0.0243784); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.12s 00:00:00.31 Elapsed: 00:00:00.32
# Mc/sec: 833.18
//
Query:       MMETSP1137-20121227|5052_1  [L=209]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (209 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        54  (0.0131643); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.13s 00:00:00.33 Elapsed: 00:00:00.32
# Mc/sec: 862.05
//
Query:       MMETSP1137-20121227|5053_1  [L=288]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (288 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        63  (0.0153584); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.17s 00:00:00.40 Elapsed: 00:00:00.35
# Mc/sec: 1086.08
//
Query:       MMETSP1137-20121227|5054_1  [L=76]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (76 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        85  (0.0207216); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.15s 00:00:00.28 Elapsed: 00:00:00.74
# Mc/sec: 135.56
//
Query:       MMETSP1137-20121227|5055_1  [L=286]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.6e-40  135.4   0.7    4.5e-40  135.1   0.5    1.1  1  TIGR03634 arc_protsome_B: proteasome endopeptidase complex, archaeal, beta subunit
    1.5e-18   64.9   0.0    2.3e-18   64.3   0.0    1.2  1  TIGR03633 arc_protsome_A: proteasome endopeptidase complex, archaeal, alpha subunit
    3.5e-11   41.1   2.2    2.2e-10   38.5   1.5    1.9  1  TIGR03690 20S_bact_beta: proteasome, beta subunit
     0.0003   18.4   0.7     0.0012   16.5   0.0    1.9  2  TIGR03692 ATP_dep_HslV: ATP-dependent protease HslVU, peptidase subunit
  ------ inclusion threshold ------
      0.018   12.3   0.0      0.043   11.1   0.0    1.6  2  TIGR03691 20S_bact_alpha: proteasome, alpha subunit


Domain annotation for each model (and alignments):
>> TIGR03634  arc_protsome_B: proteasome endopeptidase complex, archaeal, beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  135.1   0.5   5.5e-43   4.5e-40       1     185 []      48     231 ..      48     231 .. 0.98

  Alignments for each domain:
  == domain 1    score: 135.1 bits;  conditional E-value: 5.5e-43
   TIGR03634   1 gtTtvGikvkdgvvlAadkraslgnlvasknvkKvfkiddkialtiaGsvgdaqslvrllkaeaklyelrrkkkisvkalatllsnllksskflpflvqllvgGvdeegpklyslDplGsiiedkytatGsGspvalgvLedeYeedlsleeakklavkaiksaieRDvasGdgidvvvitkdgv 185
                 gtT  G++++ gvvl ad+ra+ g+ v +kn +K++ i+d+i   +aG+ +d +  + l++ +++l ++ ++k+  v ++ t+l  +l  ++     + l++gGvd +gp+ly++ p Gs+ +  y+++GsGs  a++v+e+eY+++++  ea+kl+  ai s i+ D  sG  +d++vitk+g+
  MMETSP1137-20121227|5055_1  48 GTTLAGVVFDGGVVLGADTRATGGDTVCDKNCDKIHYIADNIWCCGAGTSADTEGSTALISSQLELHRMATNKQPRVVTALTMLKRMLFRYQG-HVSAALVLGGVDCNGPSLYTVYPHGSTDSLPYVTMGSGSLAAMAVFEAEYKSGMTKAEAMKLVQAAIMSGINNDLGSGGSVDLMVITKEGY 231
                 89***************************************************************************************9998.6788999**********************************************************************************96 PP

>> TIGR03633  arc_protsome_A: proteasome endopeptidase complex, archaeal, alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.3   0.0   2.8e-21   2.3e-18      25     215 ..      44     231 ..      41     245 .. 0.85

  Alignments for each domain:
  == domain 1    score: 64.3 bits;  conditional E-value: 2.8e-21
   TIGR03633  25 avkrgttavGiktkegvvlivdkrits.klleaesiekifkiDdhvgaataGlvaDarvlidrarveaqvnrltYdepievevlakkvadlkqqytqvGGvrPfGvalliaGvddkearlfetdPsGalleykavaiGagrekvlellekeykedlsldeaielalkalakaleeel.kaeevevavveveek 215
                 a k gtt  G+ ++ gvvl +d r+t    +  ++ +ki+ i d + ++ aG  aD+        ++   +r+  +++ +v +   +++ lk++  ++ G      al+++Gvd +++ l++  P G + +   v++G+g+ ++++++e eyk+ ++  ea++l  +a+++ ++++l +  +v++ v+++e  
  MMETSP1137-20121227|5055_1  44 ARKTGTTLAGVVFDGGVVLGADTRATGgDTVCDKNCDKIHYIADNIWCCGAGTSADTEGSTALISSQLELHRMATNKQPRVVT---ALTMLKRMLFRYQGH--VSAALVLGGVDCNGPSLYTVYPHGSTDSLPYVTMGSGSLAAMAVFEAEYKSGMTKAEAMKLVQAAIMSGINNDLgSGGSVDLMVITKEGY 231
                 7799******************998853789999***********************99888888899999999888877654...455556665555553..468**************************************************************999998666266799**99999863 PP

>> TIGR03690  20S_bact_beta: proteasome, beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.5   1.5   2.7e-13   2.2e-10       4     184 ..      47     220 ..      44     244 .. 0.78

  Alignments for each domain:
  == domain 1    score: 38.5 bits;  conditional E-value: 2.7e-13
   TIGR03690   4 hgttivalaykgGvllaGdrratqGnliasrdvekvf.kadeysavgiaGtaglavelvklfqvelehyekieGvplslegkanrlaamvrsnlaaalqGlavvpl.lvGydleaekGrifsydvvggkeeeeeyesvGsGsvfakgalkklykedlseedavrvavealydaadddsatGGp 184
                  gtt+  +++ gGv+l  d rat G+ + +++ +k++ +ad+  + g aGt++ +   + l   +le +     ++  + +      +m++  l    qG +   l l G d +  +  +++     g+++   y ++GsGs+ a + +   yk+++++++a++++  a+    ++d  +GG 
  MMETSP1137-20121227|5055_1  47 TGTTLAGVVFDGGVVLGADTRATGGDTVCDKNCDKIHyIADNIWCCG-AGTSADTEGSTALISSQLELHRMATNKQPRVVT----ALTMLKRML-FRYQGHVSAALvLGGVDCNGPS--LYT-VYPHGSTDSLPYVTMGSGSLAAMAVFEAEYKSGMTKAEAMKLVQAAIMSGINNDLGSGGS 220
                 69*********************************962577776666.899888888999999888877655554444433....445665555.4568877666615567765432..322.234678999***************************************999999999885 PP

>> TIGR03692  ATP_dep_HslV: ATP-dependent protease HslVU, peptidase subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0   1.4e-06    0.0012       1      68 [.      49     115 ..      49     154 .. 0.85
   2 ?    0.0   0.1      0.16   1.3e+02     120     151 ..     173     206 ..     160     214 .. 0.73

  Alignments for each domain:
  == domain 1    score: 16.5 bits;  conditional E-value: 1.4e-06
   TIGR03692   1 ttilavrkngkvviagdGqvtlgetvlkenarkvrrlyegkvlaGfaGstadaltLferfeekleeyk 68 
                 tt+  v  +g vv+++d ++t g+tv  +n  k++ ++++ + +  aG+ ad+   +  + ++le ++
  MMETSP1137-20121227|5055_1  49 TTLAGVVFDGGVVLGADTRATGGDTVCDKNCDKIHYIADN-IWCCGAGTSADTEGSTALISSQLELHR 115
                 89999999***************************99866.66666******9877777777777665 PP

  == domain 2    score: 0.0 bits;  conditional E-value: 0.16
   TIGR03692 120 iaiGsGgnyalaaaralle..etelsaeeiaeka 151
                 +++GsG+  a+a  +a ++   t+ +a ++++ a
  MMETSP1137-20121227|5055_1 173 VTMGSGSLAAMAVFEAEYKsgMTKAEAMKLVQAA 206
                 7899999999999888886223455555555555 PP

>> TIGR03691  20S_bact_alpha: proteasome, alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0      0.85     7e+02     137     158 ..      52      73 ..      40      90 .. 0.69
   2 ?   11.1   0.0   5.2e-05     0.043     129     202 ..     151     223 ..     131     252 .. 0.74

  Alignments for each domain:
  == domain 1    score: -2.7 bits;  conditional E-value: 0.85
   TIGR03691 137 yrltfdGsivderefvvlGGta 158
                   + fdG +v   +  + GG +
  MMETSP1137-20121227|5055_1  52 AGVVFDGGVVLGADTRATGGDT 73 
                 4566777777777777777654 PP

  == domain 2    score: 11.1 bits;  conditional E-value: 5.2e-05
   TIGR03691 129 eeteedqlyrltfdGsivderefvvlGGtaeqiaaalkesyeeelsladalrvavqalaaesekekrelkaasl 202
                  + + ++ly +   Gs +d   +v++G  +   +a+++++y+++++ a+a+++  +a+ ++ +++  +    +l
  MMETSP1137-20121227|5055_1 151 VDCNGPSLYTVYPHGS-TDSLPYVTMGSGSLAAMAVFEAEYKSGMTKAEAMKLVQAAIMSGINNDLGSGGSVDL 223
                 5667788999988888.6999********************************999999887666544443333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (286 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        92  (0.0224281); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.27u 0.18s 00:00:00.45 Elapsed: 00:00:00.81
# Mc/sec: 466.04
//
Query:       MMETSP1137-20121227|5056_1  [L=387]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.7e-31  107.2   0.0      2e-29  100.5   0.0    2.0  1  TIGR01293 Kv_beta: voltage-dependent potassium channel beta subunit


Domain annotation for each model (and alignments):
>> TIGR01293  Kv_beta: voltage-dependent potassium channel beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  100.5   0.0   4.9e-33     2e-29       1     303 [.      31     358 ..      31     371 .. 0.84

  Alignments for each domain:
  == domain 1    score: 100.5 bits;  conditional E-value: 4.9e-33
   TIGR01293   1 lkyrnlgksglrvsclglgtwvvfgsqisdeqaedllklayesginlfdiaevy.......aagkaetelgkilkkkgwrrssyvittkifwggkaee.....erglsrkhiieglkaslerlqleyvdivlanradpsspm.............e.....evvramtyvinqglalywgtsrwsaveimeaysvarqfnlippiveqaeyhlfqrekvelqlpelyhkigvgavtwsplalalvdskyddk.lpkaskatlkgyqwlkekvrseegrrqqarlkdlaalaeklgctlaqlaiawslrsegvssvllgassaeqlmeslgslqv 303
                 + y  lg s l vs   lgt  ++g q + ++a d l  a++ g+n++d+ae y       + g++++ + k +k +   r s++++tk+     + +        + r  +i ++ asl rl+ +++d++ ++ +d   p+             +     e v  m  +i+ g   +wg s  +   + e   v+    +  p+  q  y l+qr   e  l e  +++ vg + +spl+ ++ ++ky +   p+a  +    +q   ++    +     +r  d   +a ++g +++qlaia++  +  v s ++ga+s eql ++   ++v
  MMETSP1137-20121227|5056_1  31 MTYTRLGSSDLMVSDCCLGTM-TWGKQNTAKEAADQLSAAWDMGVNFLDTAEGYpvpmtaeTQGETDRCIAKWMKTAKQPRDSVILATKVCGRNDRFTwfrdgPTIVNRDQVIASVDASLSRLETDHIDLLQIHWPDRYVPLfgttrydvskerdDevsfaEQVEVMGELIKAGKIRHWGLSNETPFGVCEFARVCDALGVPRPVSVQNSYSLLQRSD-ETGLVEAMRRLDVGYLPYSPLSAGVLSGKYRGLqTPPAGSRM-ELFQGYMDRYLKSQAPASVDRYCD---VAAQFGLSPSQLAIAFCASRPFVASTIIGATSMEQLRDNXAGFNV 358
                 78*****************95.789999999999999***************98444332235778889*********************865544332111145689**************************99988886444444444333312222267899**************************************************86.999***************************885366665554.899999999998888887777766...678**********************************99877766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (387 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        90  (0.0219405); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.31u 0.13s 00:00:00.44 Elapsed: 00:00:00.48
# Mc/sec: 1064.16
//
Query:       MMETSP1137-20121227|5057_1  [L=207]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (207 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        85  (0.0207216); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.14s 00:00:00.33 Elapsed: 00:00:00.34
# Mc/sec: 803.58
//
Query:       MMETSP1137-20121227|5058_1  [L=486]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (486 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        79  (0.0192589); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.17s 00:00:00.51 Elapsed: 00:00:00.48
# Mc/sec: 1336.39
//
Query:       MMETSP1137-20121227|5059_1  [L=345]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (345 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        76  (0.0185275); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.14s 00:00:00.38 Elapsed: 00:00:00.38
# Mc/sec: 1198.32
//
Query:       MMETSP1137-20121227|5060_1  [L=445]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   1.6e-109  364.1   0.1   2.1e-109  363.8   0.1    1.1  1  TIGR01328 met_gam_lyase: methionine gamma-lyase
    8.5e-88  292.3   0.1    1.2e-87  291.9   0.1    1.1  1  TIGR01325 O_suc_HS_sulf: O-succinylhomoserine sulfhydrylase
    2.3e-85  284.7   0.0    3.8e-46  155.5   0.0    2.0  2  TIGR01326 OAH_OAS_sulfhy: O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase
    3.3e-84  280.6   0.0    4.4e-84  280.2   0.0    1.1  1  TIGR02080 O_succ_thio_ly: O-succinylhomoserine (thiol)-lyase
    1.2e-79  265.6   0.0    1.8e-79  265.0   0.0    1.3  1  TIGR01329 cysta_beta_ly_E: cystathionine beta-lyase
    1.6e-64  215.8   0.1      2e-64  215.5   0.1    1.1  1  TIGR01324 cysta_beta_ly_B: cystathionine beta-lyase
    8.4e-06   22.7   0.0    1.2e-05   22.2   0.0    1.3  1  TIGR03947 viomycin_VioD: capreomycidine synthase
    8.9e-05   19.6   0.0    0.00016   18.7   0.0    1.4  1  TIGR01140 L_thr_O3P_dcar: threonine-phosphate decarboxylase
     0.0001   19.1   0.0    0.00023   18.0   0.0    1.5  2  TIGR01141 hisC: histidinol-phosphate transaminase
    0.00087   16.8   0.0     0.0017   15.9   0.0    1.4  1  TIGR04000 thiol_BshB2: bacillithiol biosynthesis deacetylase BshB2
    0.00096   16.3   0.1     0.0016   15.6   0.1    1.3  1  TIGR01976 am_tr_V_VC1184: cysteine desulfurase family protein
     0.0043   14.0   0.0     0.0099   12.8   0.0    1.7  2  TIGR03539 DapC_actino: succinyldiaminopimelate transaminase
  ------ inclusion threshold ------
      0.048   10.4   4.9       0.06   10.1   0.4    2.4  3  TIGR02426 protocat_pcaB: 3-carboxy-cis,cis-muconate cycloisomerase


Domain annotation for each model (and alignments):
>> TIGR01328  met_gam_lyase: methionine gamma-lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  363.8   0.1  6.7e-112  2.1e-109      15     390 ..      36     441 ..      20     442 .. 0.89

  Alignments for each domain:
  == domain 1    score: 363.8 bits;  conditional E-value: 6.7e-112
   TIGR01328  15 pkdefgaltppiyqtstfvfesaeqGGnrfa......GeeeGyvysrlgnptvdllerriaelegae.....aavatasGmgaiaatllsllkagdevisdetlyGctfalledaltkfgidvkfvdmaspeevkaaikdntkivyfetpanptlklidleavvrvakekgvk......vivdntfatplltrpval.GvdvvvhsatkyigGhgdvvaGvliGdaellqrirlvgvkdltGavispfdaflvlrGlktlavrmkresenaekvaeklkehpavekvlypGleehedrdiaakqmkkg..........Ggllafelkgge...adaakllnrlklirlavslGdaetliqhpasmthavvpkeereaaGiseglvrlsvGledvddvladlkqalea 390
                  +++  al  pi + stf +++a++G    a       +e+Gyvysr g pt +   r++a leg e      ++ ++sGm+ai++ l+++lkagd+ +   t+yG t+ +l++  +++g++v+fvd + p + +aa+k+ntk+vy e+panpt +l dl+av+ v  ++ +k      v+ d tfatp+ +r +++ Gv+v +hsatkyigGh+d++aG ++ + e++ + +l+ ++ l Ga ++p ++fl+ rGl+tl vrm+r+ ena++vae+l++hp v   +ypGl +h+d+ +a+     g          Gg+laf++ g+    a a +l ++lk+++lavslG++e+li+hpasmtha+vp+e+r a G+++glvrlsvGled  d++ dlkqal+a
  MMETSP1137-20121227|5060_1  36 ARKRVKALALPIVMGSTFELDDAQHGARLHAkregpyADEDGYVYSRWGSPTNEGAARQLAALEGIEpgmtgGCMLFTSGMSAITSALMAVLKAGDHAVFPYTVYGGTHEFLTEFAQHWGVEVSFVDATDPAQYAAALKPNTKVVYTESPANPTCRLTDLAAVAAVVDSHAAKghsrpwVMCDSTFATPYHQRCLEIsGVNVSIHSATKYIGGHSDILAGAVTSNSEEFMH-KLAKIQKLLGAPLAPLESFLLSRGLRTLHVRMERHGENAMAVAEMLDKHPLVASTFYPGLASHPDHALAKTVFSSGgkgsdrpqtyGGMLAFIVAGADtalARARRLCEHLKVVTLAVSLGGTESLIEHPASMTHAMVPREDRLAGGLADGLVRLSVGLEDSRDLVNDLKQALDA 441
                 456788999******************99983333333679***********************987444336899*************************************************************************************9988766555444445559***************9879***********************999988765.677888999************************************************************9987665232333333379******997622255778*******************************************************************96 PP

>> TIGR01325  O_suc_HS_sulf: O-succinylhomoserine sulfhydrylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  291.9   0.1   3.7e-90   1.2e-87      21     380 .]      47     439 ..      30     439 .. 0.89

  Alignments for each domain:
  == domain 1    score: 291.9 bits;  conditional E-value: 3.7e-90
   TIGR01325  21 lyltssyvydsaaeaekrfag......evkgfvysryanPtvkvfeerlalleGaea.....avatasGmaailaallallsaGdhvvasrslfGstvvlvseilkrfGvevsfvdatdlkaWeaalkantkllfletPsnPlaelvdiaalaelahavGak......lvvdnvfatPvlqqplkl.GadvvvysatkaidGqGrvlGGvilg.seelieevakllrstGpalspfnaWvllkGletlslrvqkqadsalklaefleeqpkvqavyyaglPdhPqaelakrqqsGg..........Gtvvafdlkg....reaafkvldalelvdisnnlGdakslithPattthrrlspeeraalgigdglvrlsvGledvddlkadlkral 380
                 + + s++  d a++ ++  a+      + +g+vysr++ Pt +    +la+leG e      ++  +sGm+ai++al+a+l+aGdh v   +++G t  ++ e+ +++Gvevsfvdatd++++ aalk+ntk+++ e+P+nP   l+d+aa+a +  +  ak      ++ d +fatP  q+ l+  G++v+++satk+i G+  +l G++ + see+++++ak+ +  G  l+p+++++l +Gl tl++r++++ ++a+++ae+l+++p v   +y+gl +hP++ lak   s g          G ++af ++g     ++a ++ + l++v  +  lG + sli hPa+ th  ++ e+r+a g++dglvrlsvGled  dl++dlk+al
  MMETSP1137-20121227|5060_1  47 IVMGSTFELDDAQHGARLHAKregpyaDEDGYVYSRWGSPTNEGAARQLAALEGIEPgmtggCMLFTSGMSAITSALMAVLKAGDHAVFPYTVYGGTHEFLTEFAQHWGVEVSFVDATDPAQYAAALKPNTKVVYTESPANPTCRLTDLAAVAAVVDSHAAKghsrpwVMCDSTFATPYHQRCLEIsGVNVSIHSATKYIGGHSDILAGAVTSnSEEFMHKLAKIQKLLGAPLAPLESFLLSRGLRTLHVRMERHGENAMAVAEMLDKHPLVASTFYPGLASHPDHALAKTVFSSGgkgsdrpqtyGGMLAFIVAGadtaLARARRLCEHLKVVTLAVSLGGTESLIEHPASMTHAMVPREDRLAGGLADGLVRLSVGLEDSRDLVNDLKQAL 439
                 456788999999999999987322322469************************9962233367789**************************************************************************************99765555444566699**************9659********************9998626889999*********************************************************************987655122222222356899999997666678899*****************************************************************98 PP

>> TIGR01326  OAH_OAS_sulfhy: O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  155.5   0.0   1.2e-48   3.8e-46      15     223 ..      38     265 ..      24     275 .. 0.85
   2 !  127.9   0.0   2.8e-40   8.8e-38     264     417 ..     274     439 ..     264     440 .. 0.88

  Alignments for each domain:
  == domain 1    score: 155.5 bits;  conditional E-value: 1.2e-48
   TIGR01326  15 pttksravPiyattsyvfdsaehaaalfgLe......elGniYsrlmnPttdvlekriaaleg...Gvaa..lavasGqaaillallnlaeaGdnivsssklYGGtynlfkvtlkrlGievrfvdkddleelekaidentkavfletignPkldvlDiekvaevakka.....gvp.livDntvatpylvrPleh.GadivvhsatkylgGhgtaigGvivd.sgkfd 223
                 +  k+ a+Pi+  +++  d+a+h+a+l + +      e G++Ysr   Pt++   +++aaleg   G+++  + ++sG++ai+ al+++ +aGd+ v   ++YGGt++ ++   ++ G+ev+fvd  d+ ++++a+++ntk+v++e+ +nP+++++D+++va+v  ++     + p +++D t+atpy  r le  G+++ +hsatky+gGh+  ++G+++  s +f 
  MMETSP1137-20121227|5060_1  38 KRVKALALPIVMGSTFELDDAQHGARLHAKRegpyadEDGYVYSRWGSPTNEGAARQLAALEGiepGMTGgcMLFTSGMSAITSALMAVLKAGDHAVFPYTVYGGTHEFLTEFAQHWGVEVSFVDATDPAQYAAALKPNTKVVYTESPANPTCRLTDLAAVAAVVDSHaakghSRPwVMCDSTFATPYHQRCLEIsGVNVSIHSATKYIGGHSDILAGAVTSnSEEFM 265
                 4557899********************997622222268**********************99666665333789**************************************************************************************998666522222344489**************955**********************9985145565 PP

  == domain 2    score: 127.9 bits;  conditional E-value: 2.8e-40
   TIGR01326 264 dlGaalsPfnaflllqGletLslrlerhvenalkvaefLekhpkvkkvnypgLasssehelakkyle.........kgagavlsfevkggkea...akkfidalkLasklanvgDakslvihPastthkqlseeeqlkaGvtkdlirlsvGienidDiiaDleqal 417
                  lGa l+P ++fll +Gl tL++r+erh ena++vae L+khp v++  ypgLas+++h+lak+ ++         + +g++l+f v+g   a   a++++++lk+++ ++ +g + sl+ hPas th  +  e++l+ G++ +l+rlsvG+e++ D+++Dl+qal
  MMETSP1137-20121227|5060_1 274 LLGAPLAPLESFLLSRGLRTLHVRMERHGENAMAVAEMLDKHPLVASTFYPGLASHPDHALAKTVFSsggkgsdrpQTYGGMLAFIVAGADTAlarARRLCEHLKVVTLAVSLGGTESLIEHPASMTHAMVPREDRLAGGLADGLVRLSVGLEDSRDLVNDLKQAL 439
                 48*************************************************************987622211111134689******998765222678******************************************************************8 PP

>> TIGR02080  O_succ_thio_ly: O-succinylhomoserine (thiol)-lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  280.2   0.0   1.4e-86   4.4e-84      40     382 .]      75     442 ..      67     442 .. 0.89

  Alignments for each domain:
  == domain 1    score: 280.2 bits;  conditional E-value: 1.4e-86
   TIGR02080  40 praydysrsgnPtrdllekalaelek...Ga..davvtssGmsaiellviallkpddllvaPhdcyGGtyrllkalakkgklkvqlvdqsdeealekalaekpklvlietPsnPllrvvdiaklcklakaaga......vvvvdntflsPilqkPlal.GadlvlhsatkylnGhsdviaGaviakdkqlaeelawwanalGvtgaafdsylllrGlrtlaarvreqernakkiveylqkqplvkkvyypglpdhagheiaak..........qqkGfGallsfelkGgeeev...kkflkklklftlaeslGGvesliahpatmthaamekeareeaGikdellrlsvGledaddliadleqalaav 382
                    y ysr g Pt +  ++ la le+   G   ++++ +sGmsai+  ++a+lk++d  v P+  yGGt+ +l+  a++  ++v +vd +d +  ++al+ ++k+v+ e+P+nP  r++d+a+++ +  ++ a       v+ d tf +P  q+ l++ G ++ +hsatky+ Ghsd++aGav ++ ++ +++la+    lG+  a+++s+ll rGlrtl +r++++ +na++++e+l+k+plv + +ypgl++h++h++a+           + + +G +l+f ++G+ +++   +++ ++lk+ tla slGG esli hpa+mtha + +e r + G+ d l+rlsvGled+ dl++dl+qal a+
  MMETSP1137-20121227|5060_1  75 EDGYVYSRWGSPTNEGAARQLAALEGiepGMtgGCMLFTSGMSAITSALMAVLKAGDHAVFPYTVYGGTHEFLTEFAQHWGVEVSFVDATDPAQYAAALKPNTKVVYTESPANPTCRLTDLAAVAAVVDSHAAkghsrpWVMCDSTFATPYHQRCLEIsGVNVSIHSATKYIGGHSDILAGAVTSNSEEFMHKLAKIQKLLGAPLAPLESFLLSRGLRTLHVRMERHGENAMAVAEMLDKHPLVASTFYPGLASHPDHALAKTvfssggkgsdRPQTYGGMLAFIVAGADTALaraRRLCEHLKVVTLAVSLGGTESLIEHPASMTHAMVPREDRLAGGLADGLVRLSVGLEDSRDLVNDLKQALDAC 442
                 56799**************99999873334322467899***********************************************************************************998764433221112225889*************98689****************************************************************************************************86222222221134569**********987763337899*****************************************************************886 PP

>> TIGR01329  cysta_beta_ly_E: cystathionine beta-lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  265.0   0.0   5.8e-82   1.8e-79      36     381 ..      75     442 ..      28     444 .. 0.88

  Alignments for each domain:
  == domain 1    score: 265.0 bits;  conditional E-value: 5.8e-82
   TIGR01329  36 dgeydysrsGnPtrtalesllakleka.....eralavssGmaal.dvivrllkagdeiiagddlyGGtdrlltqlksksgvvvvhvdttdlekvkavlgdlpktklvllesPtnPlikivdirkiaeaakalned....alvvvdntmlspllcnPlel.GadivlesatkylaGhsdvmaGvlavkseeiakklyflinseGaglaPfdswlllrGiktlairlekqqenavaialfletrsrvaskvryaGlksepdfklhksq....akGa......Gavlsfet.G...svalskrlveaaklfaitvsfGsvnslismPcklshasidaevrkerdlpedlvrlsvGiedvedlikdlsaalvaa 381
                 +  y ysr G Pt +   ++la le +        + ++sGm+a+ ++++ +lkagd+ +    +yGGt+ +lt ++++ gv v +vd td  + +a+l+  p+tk+v+ esP+nP ++++d++++a ++ +++ +      v+ d t+ +p + + le+ G++++++satky+ Ghsd++aG ++++see  +kl+ ++   Ga laP++s+ll rG++tl +r+e+  ena+a+a+ l++++ va  + y+Gl s+pd+ l k++     kG+      G +l+f+  G    +a+++rl e  k+ +++vs+G  +sli+ P  ++ha ++ e r + +l++ lvrlsvG+ed  dl++dl++al a 
  MMETSP1137-20121227|5060_1  75 EDGYVYSRWGSPTNEGAARQLAALEGIepgmtGGCMLFTSGMSAItSALMAVLKAGDHAVFPYTVYGGTHEFLTEFAQHWGVEVSFVDATDPAQYAAALK--PNTKVVYTESPANPTCRLTDLAAVAAVVDSHAAKghsrPWVMCDSTFATPYHQRCLEIsGVNVSIHSATKYIGGHSDILAGAVTSNSEEFMHKLAKIQKLLGAPLAPLESFLLSRGLRTLHVRMERHGENAMAVAEMLDKHPLVA-STFYPGLASHPDHALAKTVfssgGKGSdrpqtyGGMLAFIVaGadtALARARRLCEHLKVVTLAVSLGGTESLIEHPASMTHAMVPREDRLAGGLADGLVRLSVGLEDSRDLVNDLKQALDAC 442
                 33499********************994443345788*******9356788*************************************************..************************99988776551111569*****************9***********************************************************************************776.89************9876421112332333444678998752333358899********************************************************************9765 PP

>> TIGR01324  cysta_beta_ly_B: cystathionine beta-lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  215.5   0.1   6.3e-67     2e-64      35     376 ..      71     441 ..      33     442 .. 0.84

  Alignments for each domain:
  == domain 1    score: 215.5 bits;  conditional E-value: 6.3e-67
   TIGR01324  35 sarakdkltyGirGtsttvalqdalaeleG.....aagvilyPsGlaavtnallafvkaGdevlvvdsaykPtrrfcdivlkrlgveveyydPkigediaalikpntkvvfleaPasltlevqdiPaiakaar......aagvvvlidntwaagllfkale.hgvdisiqaatkylaGhsdvllGtvaanesa.vekllealyllGqsvdaddaytvlrGlrtlgvrlkrhqesalaiakwleeqkevarvlhPalPsdpghelfkrdfs....Gs......sGlfsvvl..krlsqkevhafldalklfglgyswGGyeslalnvqpe...la.irrsikrdleGplirlhiGledvddlkadlkaGlea 376
                    ++d ++y + G +t+   +  la+leG     + g++l+ sG++a+t+al+a++kaGd+ +   ++y  t++f     ++ gvev + d    ++ aa +kpntkvv++e+Pa  t  + d+ a+a++         +   v+ d t+a++   + le  gv++si++atky++Ghsd+l G+v++n ++ ++kl +   llG    + + + + rGlrtl vr++rh e+a+a+a+ l++++ va  ++P l s+p+h+l k  fs    Gs       G++++++  + ++  +  ++ ++lk+ +l+ s GG esl+         +      + + l   l+rl +Gled  dl  dlk+ l+a
  MMETSP1137-20121227|5060_1  71 PYADEDGYVYSRWGSPTNEGAARQLAALEGiepgmTGGCMLFTSGMSAITSALMAVLKAGDHAVFPYTVYGGTHEFLTEFAQHWGVEVSFVDATDPAQYAAALKPNTKVVYTESPANPTCRLTDLAAVAAVVDshaakgHSRPWVMCDSTFATPYHQRCLEiSGVNVSIHSATKYIGGHSDILAGAVTSNSEEfMHKLAKIQKLLGAPLAPLESFLLSRGLRTLHVRMERHGENAMAVAEMLDKHPLVASTFYPGLASHPDHALAKTVFSsggkGSdrpqtyGGMLAFIVagADTALARARRLCEHLKVVTLAVSLGGTESLIEHPASMthaMVpREDRLAGGLADGLVRLSVGLEDSRDLVNDLKQALDA 441
                 3457899**********************955554579******************************************************************************************99876444223334589***************9569***********************998765168999999*******************************************************************74333333333335899988833445566788999******************96543321122224556677788899******************99876 PP

>> TIGR03947  viomycin_VioD: capreomycidine synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.2   0.0   3.8e-08   1.2e-05      64     186 ..     101     223 ..      85     313 .. 0.80

  Alignments for each domain:
  == domain 1    score: 22.2 bits;  conditional E-value: 3.8e-08
   TIGR03947  64 lagGdaekvlvthGsseaiylvltallrPGdevvvvdpayhslselavalgakvrrwplaaerdfrpdlddlralvtdrtrlvvvnfPhnPtGasvderelsellelaaesg...avllWdaafad 186
                 +++G +   +       ai  +l a+l+ Gd+ v    +y   +e+ +      ++w ++++   ++d+++ +a +++ t++v    P nPt +  d +  +++++  a+ g    +++ d+ fa 
  MMETSP1137-20121227|5060_1 101 IEPGMTGGCMLFTSGMSAITSALMAVLKAGDHAVFPYTVYGGTHEFLTEF---AQHWGVEVSFVDATDPAQYAAALKPNTKVVYTESPANPTCRLTDLAAVAAVVDSHAAKGhsrPWVMCDSTFAT 223
                 556665555554444569****************9999998877776544...45677777777788**************************************988766511157777777765 PP

>> TIGR01140  L_thr_O3P_dcar: threonine-phosphate decarboxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.0   5.2e-07   0.00016      64     172 ..     106     225 ..      75     247 .. 0.72

  Alignments for each domain:
  == domain 1    score: 18.7 bits;  conditional E-value: 5.2e-07
   TIGR01140  64 daesvlavnGaqeaiqllprllapkrvlvlap.tys...eya.ralraagaevvels..dleelaael.eeadllvvvnPnNPtGrllekeellalaerlkargg...llvvDEAFidft 172
                    ++l ++G  ++  +l+++l++++ +v+    y+   e+  + +++ g+ev +++  d+++ aa+l  +++++    P NPt rl++ ++++a++++++a+g    +++ D  F+   
  MMETSP1137-20121227|5060_1 106 TGGCMLFTSGMSAITSALMAVLKAGDHAVFPYtVYGgthEFLtEFAQHWGVEVSFVDatDPAQYAAALkPNTKVVYTESPANPTCRLTDLAAVAAVVDSHAAKGHsrpWVMCDSTFATPY 225
                 356789999999999999999999998665442564211333134567799999998888888888887788899999******************999887764344888998887655 PP

>> TIGR01141  hisC: histidinol-phosphate transaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.0   7.3e-07   0.00023      84     172 ..     118     205 ..     108     210 .. 0.89
   2 ?   -3.4   0.0       2.3   7.2e+02     322     339 ..     412     429 ..     400     436 .. 0.76

  Alignments for each domain:
  == domain 1    score: 18.0 bits;  conditional E-value: 7.3e-07
   TIGR01141  84 lielliraflepgdavlvleptys.mYevsakiagaevkevplkedgqedleavleaakekvklvflasPnnPtGnllkreeiekvleev 172
                 +i+  ++a+l+ gd+++++   y   +e  +++a+   +ev++ +    d ++ ++a k ++k+v+  sP nPt  l + + + +v+++ 
  MMETSP1137-20121227|5060_1 118 AITSALMAVLKAGDHAVFPYTVYGgTHEFLTEFAQHWGVEVSFVDA--TDPAQYAAALKPNTKVVYTESPANPTCRLTDLAAVAAVVDSH 205
                 57778899***************64899999999999999999998..588899999**************************9999875 PP

  == domain 2    score: -3.4 bits;  conditional E-value: 2.3
   TIGR01141 322 eglleeclRitvGtreen 339
                  gl ++ +R++vG ++  
  MMETSP1137-20121227|5060_1 412 GGLADGLVRLSVGLEDSR 429
                 5778899******98765 PP

>> TIGR04000  thiol_BshB2: bacillithiol biosynthesis deacetylase BshB2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   5.4e-06    0.0017      80     146 ..     290     352 ..     284     363 .. 0.78

  Alignments for each domain:
  == domain 1    score: 15.9 bits;  conditional E-value: 5.4e-06
   TIGR04000  80 GlrdktvefedeeklaellkelieelkPsliitfyPgyavhPdhealgeavvravrrlekeerPkvl 146
                 Glr   v +e + + a  ++e++++ +P +  tfyPg a hPdh al+++v ++    + ++rP+++
  MMETSP1137-20121227|5060_1 290 GLRTLHVRMERHGENAMAVAEMLDK-HPLVASTFYPGLASHPDH-ALAKTVFSSG--GKGSDRPQTY 352
                 7788888899999999999999875.899999************.6777776643..3455666665 PP

>> TIGR01976  am_tr_V_VC1184: cysteine desulfurase family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.1   5.2e-06    0.0016     147     245 ..     165     269 ..     149     276 .. 0.86

  Alignments for each domain:
  == domain 1    score: 15.6 bits;  conditional E-value: 5.2e-06
   TIGR01976 147 eeadlaallsdrTRLVAvtaasnllGsivdlaaltelvhaaGa......lvvvDavhyaphaliDvqalgaDllvcsaykffgPhlGilvvraellkslkpskle 245
                 ++a++aa l + T+ V   + +n +  ++dlaa++++v +  a      +v+ D   ++p++   ++  g  + + sa k++g h  il ++  + ++ +++kl 
  MMETSP1137-20121227|5060_1 165 DPAQYAAALKPNTKVVYTESPANPTCRLTDLAAVAAVVDSHAAkghsrpWVMCDSTFATPYHQRCLEISGVNVSIHSATKYIGGHSDILAGAVTSNSEEFMHKLA 269
                 68999********************************96554433455589*************************************99998887777766665 PP

>> TIGR03539  DapC_actino: succinyldiaminopimelate transaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.8   0.0   3.1e-05    0.0099     102     175 ..     127     209 ..      73     259 .. 0.77
   2 ?   -3.5   0.0       2.8   8.9e+02      19      30 ..     414     425 ..     406     441 .. 0.73

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 3.1e-05
   TIGR03539 102 lgagdtvviPevayP.tyevgarlag.....aeavaaddlteldp...ekvkliwlnsPanPtGrvlsveelrkvvalarerg 175
                 l+agd+ v+P + y  t+e  +++a+      + v a d+++       ++k+++ +sPanPt r+ ++  + +vv+   ++g
  MMETSP1137-20121227|5060_1 127 LKAGDHAVFPYTVYGgTHEFLTEFAQhwgveVSFVDATDPAQYAAalkPNTKVVYTESPANPTCRLTDLAAVAAVVDSHAAKG 209
                 5677777888777743777777777511111233444455554434435789***********************98766555 PP

  == domain 2    score: -3.5 bits;  conditional E-value: 2.8
   TIGR03539  19 hpdGivdlsvGt 30 
                  +dG+v lsvG 
  MMETSP1137-20121227|5060_1 414 LADGLVRLSVGL 425
                 57999****995 PP

>> TIGR02426  protocat_pcaB: 3-carboxy-cis,cis-muconate cycloisomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.4   0.00019      0.06     144     183 ..      11      47 ..       3      54 .. 0.85
   2 ?   -3.9   0.0       3.5   1.1e+03     113     145 ..     289     321 ..     286     323 .. 0.70
   3 ?    1.8   0.0     0.061        19     155     191 ..     356     392 ..     349     441 .. 0.80

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 0.00019
   TIGR02426 144 rTllQqAvpttvglkaagwlaavlrardrlealrtealal 183
                 r l  +A ptt++++aa++l+  + ar+r++al+   l++
  MMETSP1137-20121227|5060_1  11 RALATHAKPTTFATQAASVLQVSAYARKRVKALA---LPI 47 
                 77889**************************997...554 PP

  == domain 2    score: -3.9 bits;  conditional E-value: 3.5
   TIGR02426 113 daldllladlerlaeaLaelaarhrdtpltarT 145
                 ++l  l+ ++er+ e   ++a+   + pl+a T
  MMETSP1137-20121227|5060_1 289 RGLRTLHVRMERHGENAMAVAEMLDKHPLVAST 321
                 556667777777777777777777777887777 PP

  == domain 3    score: 1.8 bits;  conditional E-value: 0.061
   TIGR02426 155 vglkaagwlaavlrardrlealrtealalqfGGAaGt 191
                 ++  +ag   a++rar+  e+l+  +la+++GG    
  MMETSP1137-20121227|5060_1 356 LAFIVAGADTALARARRLCEHLKVVTLAVSLGGTESL 392
                 678899999************************7654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (445 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       110  (0.0268162); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                        24  (0.0058508); expected 4.1 (0.001)
Passed Fwd filter:                        13  (0.00316919); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.50u 0.17s 00:00:00.67 Elapsed: 00:00:00.80
# Mc/sec: 734.19
//
Query:       MMETSP1137-20121227|5061_1  [L=293]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.2e-30  102.6   0.0    4.9e-30  102.4   0.0    1.0  1  TIGR00376 TIGR00376: putative DNA helicase


Domain annotation for each model (and alignments):
>> TIGR00376  TIGR00376: putative DNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.4   0.0   1.2e-33   4.9e-30     362     629 ..      13     291 ..       2     293 .] 0.83

  Alignments for each domain:
  == domain 1    score: 102.4 bits;  conditional E-value: 1.2e-33
   TIGR00376 362 keFDvvviDEasqAlepsvliPlvkar...klilAGDhkqLPPtvlsed..aeeLektLferlik..kyper...sklLnvqYRmnekimefpskefYngklkAdesvanillrdlvkeeateveedledkiPllfidtsglelleakekdstskynegEvelvkeiikeLvkl.......gvpeeeigvisPYdaqvdllrklleekkidiEvssvDGFqGREkeviilslvRsnrkg.......evGFLkdlRRlnvaltRarRklivigdsevlkankvlkrlieyvkk 629
                  +F  +v+DEa+q +e++ l+Pl  a    ++++AGD  qL P + s+   +++L+ +++erl     y+     +  L   YR ++ +++  s+  Y++kl   +  ++       +  a  +++  + + P+lf + +g     ++e ds+s  n++E++     i+eL+          +++ee+gvi+PY +q    +     +   + v s + F G E  ++ +s vR+ ++        + GF+ + +R+n al Ra    +v+gd  +l + k +++ i  +++
  MMETSP1137-20121227|5061_1  13 GHFTHIVVDEAAQLMEAEALLPLSLAGprtRVVMAGDPLQLGPSTFSKVdsVHGLHCSMMERLQSmpAYGPSgglATHLLKNYRSHPSLVKLLSRISYKNKLESAAPRDRV------ECLAAWSKRATNPSFPMLFCNLEGSTE--EQEGDSPSFFNRQEASTLLTLIQELLATfpedgpnPLRQEEVGVITPYFKQSXEAN-----QLGRVRVGSTEEFHGHELKALFISTVRTSEQSlaydtlyDTGFVGNAKRFNTALSRAVALAVVVGDAAILLKSKEWAETIRTCRE 291
                 2699*******************9876678***********9999986568************6522687666777778889*******************9876655444......444444455556789********9865..8999********************997534433335999*********99998887.....78899***********************9974333333389******************************99999999988876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (293 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        78  (0.0190151); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.25u 0.16s 00:00:00.41 Elapsed: 00:00:00.33
# Mc/sec: 1171.90
//
Query:       MMETSP1137-20121227|5062_1  [L=281]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (281 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       232  (0.0565578); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.16s 00:00:00.42 Elapsed: 00:00:00.37
# Mc/sec: 1002.40
//
Query:       MMETSP1137-20121227|5063_1  [L=105]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (105 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        43  (0.0104827); expected 82.0 (0.02)
Passed bias filter:                       37  (0.00901999); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.54
# Mc/sec: 256.65
//
Query:       MMETSP1137-20121227|5064_1  [L=141]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (141 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        45  (0.0109703); expected 82.0 (0.02)
Passed bias filter:                       40  (0.00975134); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.13s 00:00:00.27 Elapsed: 00:00:00.44
# Mc/sec: 422.97
//
Query:       MMETSP1137-20121227|5065_1  [L=224]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (224 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       303  (0.0738664); expected 82.0 (0.02)
Passed bias filter:                      125  (0.0304729); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.15s 00:00:00.37 Elapsed: 00:00:01.03
# Mc/sec: 287.04
//
Query:       MMETSP1137-20121227|5066_1  [L=341]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (341 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        82  (0.0199902); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.15s 00:00:00.42 Elapsed: 00:00:00.41
# Mc/sec: 1097.76
//
Query:       MMETSP1137-20121227|5067_1  [L=97]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.6e-15   54.0   0.0    3.9e-15   53.8   0.0    1.0  1  TIGR00065 ftsZ: cell division protein FtsZ


Domain annotation for each model (and alignments):
>> TIGR00065  ftsZ: cell division protein FtsZ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.8   0.0   9.6e-19   3.9e-15       8      64 ..      35      93 ..      29      97 .] 0.84

  Alignments for each domain:
  == domain 1    score: 53.8 bits;  conditional E-value: 9.6e-19
   TIGR00065  8 eaellkesnkakikVvGvGGgGnNavnrlvee...evegvefiavNtDaQaLkkkkaekk 64
                 ++l++es   +ikVvGvGGgG+Navnr++++   +++ ve++avNtD QaL  +  +++
  MMETSP1137-20121227|5067_1 35 SRQLMTES-PCVIKVVGVGGGGGNAVNRMIQYgqaQSSAVEYWAVNTDIQALDASLSPNR 93
                44555555.899*******************99889999*************99887776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (97 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       100  (0.0243784); expected 82.0 (0.02)
Passed bias filter:                       97  (0.023647); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.15u 0.16s 00:00:00.31 Elapsed: 00:00:00.34
# Mc/sec: 376.56
//
Query:       MMETSP1137-20121227|5068_1  [L=389]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (389 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       111  (0.02706); expected 82.0 (0.02)
Passed bias filter:                       99  (0.0241346); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.14s 00:00:00.44 Elapsed: 00:00:00.48
# Mc/sec: 1069.66
//
Query:       MMETSP1137-20121227|5069_1  [L=64]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.031   11.1   0.0      0.033   11.1   0.0    1.0  1  TIGR01220 Pmev_kin_Gr_pos: phosphomevalonate kinase


Domain annotation for each model (and alignments):
>> TIGR01220  Pmev_kin_Gr_pos: phosphomevalonate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0     8e-06     0.033     278     325 ..      13      62 ..       6      64 .] 0.87

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 8e-06
   TIGR01220 278 rknrqllarld..devgvdieteklkalcdlaeayggaakssGaGGGdcG 325
                 r  r  ++r+d  d + + i   +l+ l d  + ++   kssG G G   
  MMETSP1137-20121227|5069_1  13 RTRRLNMQRMDpaDRTPIAIDVYNLRDLKDCVDYWAQHFKSSGGGDGRNE 62 
                 55688899998667899**************************9998655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        75  (0.0182838); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.12u 0.15s 00:00:00.27 Elapsed: 00:00:00.27
# Mc/sec: 312.86
//
Query:       MMETSP1137-20121227|5070_1  [L=175]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.3e-08   32.1   1.9    3.1e-08   31.6   1.0    1.4  1  TIGR00293 TIGR00293: prefoldin, alpha subunit
  ------ inclusion threshold ------
      0.022   12.7   5.5      0.067   11.2   0.1    2.1  2  TIGR02894 DNA_bind_RsfA: transcription factor, RsfA family
       0.12   10.3   4.0        1.1    7.1   0.4    2.3  2  TIGR02338 gimC_beta: prefoldin, beta subunit


Domain annotation for each model (and alignments):
>> TIGR00293  TIGR00293: prefoldin, alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.6   1.0   2.3e-11   3.1e-08       2     123 ..      26     153 ..      25     157 .. 0.89

  Alignments for each domain:
  == domain 1    score: 31.6 bits;  conditional E-value: 2.3e-11
   TIGR00293   2 qqlaaelqqlqeevealqaeiaalraliaeleeaietleslkka.egkevLV...pvgaglyvkak..vkdadkvlVsiGagyyvekdleeAieilkkkieelekaieklqeelqelaseaqeieqel 123
                 ++l+  + ++++  + l ++ a+l+  + e+e++ ++l +++++ e  e+LV    + +++++ka   v++++kv   +Ga+++ e  +eeAie l+k+  +   a+++l+e    l++++++ e  +
  MMETSP1137-20121227|5070_1  26 EKLQRFYSACKSMEQRLVQRKAKLKVKLPEIESTYNALCQMQAQaERGEALVthyELAQSVFAKARvpVHEENKVGLWLGANVMLEYPREEAIELLEKQLTQARAALKDLTEDQGMLRDQITTTEVNM 153
                 6777778888888999999*********************************55559******99833588899************************************999999999988776555 PP

>> TIGR02894  DNA_bind_RsfA: transcription factor, RsfA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.1   4.9e-05     0.067      85     152 ..       4      71 ..       2      79 .. 0.91
   2 ?    3.8   0.9    0.0089        12     107     156 ..     119     170 ..     106     175 .] 0.74

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 4.9e-05
   TIGR02894  85 viefLqnlketleeaeklrkekeklkeeleslqkrneeLekeleklkkkksvieedyetlikimdrar 152
                 v +f++++++ ++++   +   ekl++  ++ +   ++L ++++klk k   ie  y++l ++ ++a 
  MMETSP1137-20121227|5070_1   4 VATFIDDIDTFMKKEGSAEAALEKLQRFYSACKSMEQRLVQRKAKLKVKLPEIESTYNALCQMQAQAE 71 
                 5679999999999999999999***************************************9988875 PP

  == domain 2    score: 3.8 bits;  conditional E-value: 0.0089
   TIGR02894 107 eklkeeleslqkrneeLekeleklkkkksvieedyetlik..imdrarklav 156
                 e l+++l++ +   ++L +++  l+++ +++e + + + +  + dr rk a 
  MMETSP1137-20121227|5070_1 119 ELLEKQLTQARAALKDLTEDQGMLRDQITTTEVNMARVFNwdVKDRRRKKAE 170
                 5678899999999999999999999999999988888765225666666555 PP

>> TIGR02338  gimC_beta: prefoldin, beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   0.4   0.00082       1.1      16      50 ..      36      70 ..      16      77 .. 0.77
   2 ?    4.5   0.1    0.0053       7.3      58     104 ..     107     153 ..      94     158 .. 0.85

  Alignments for each domain:
  == domain 1    score: 7.1 bits;  conditional E-value: 0.00082
   TIGR02338 16 qqqlqavltqkqqveaelkevekaLeelekleddt 50
                +   q+++++k+++  +l e+e + ++l ++++++
  MMETSP1137-20121227|5070_1 36 KSMEQRLVQRKAKLKVKLPEIESTYNALCQMQAQA 70
                344588999******************99998877 PP

  == domain 2    score: 4.5 bits;  conditional E-value: 0.0053
   TIGR02338  58 nllvktdkeevleeLeekketlelrvktlekQeerlrekleelqeki 104
                 n++++  +ee++e Le ++ + +  +k l+  + +lr+++  ++ ++
  MMETSP1137-20121227|5070_1 107 NVMLEYPREEAIELLEKQLTQARAALKDLTEDQGMLRDQITTTEVNM 153
                 67788889999999999999999999999999999999998877665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (175 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       216  (0.0526572); expected 82.0 (0.02)
Passed bias filter:                      129  (0.0314481); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.20u 0.14s 00:00:00.34 Elapsed: 00:00:00.34
# Mc/sec: 679.36
//
Query:       MMETSP1137-20121227|5071_1  [L=248]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (248 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        67  (0.0163335); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.14s 00:00:00.35 Elapsed: 00:00:00.28
# Mc/sec: 1169.05
//
Query:       MMETSP1137-20121227|5072_1  [L=107]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (107 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        58  (0.0141394); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.14s 00:00:00.29 Elapsed: 00:00:00.78
# Mc/sec: 181.06
//
Query:       MMETSP1137-20121227|5075_1  [L=157]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (157 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        78  (0.0190151); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.14s 00:00:00.31 Elapsed: 00:00:00.30
# Mc/sec: 690.74
//
Query:       MMETSP1137-20121227|5077_1  [L=292]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.3e-61  205.4   0.3    1.9e-39  133.6   0.0    2.1  2  TIGR01241 FtsH_fam: ATP-dependent metallopeptidase HflB
    1.4e-41  140.7   0.6    4.6e-21   73.2   0.0    2.1  2  TIGR01242 26Sp45: 26S proteasome subunit P45 family
    3.2e-37  126.0   0.1    1.5e-19   67.6   0.0    2.0  2  TIGR01243 CDC48: AAA family ATPase, CDC48 subfamily
    1.6e-27   94.2   0.5    1.2e-14   51.8   0.0    2.2  2  TIGR03689 pup_AAA: proteasome ATPase
    9.3e-07   25.6   0.0    1.5e-06   24.9   0.0    1.3  1  TIGR03922 T7SS_EccA: type VII secretion AAA-ATPase EccA
    9.7e-06   22.6   0.0    1.4e-05   22.1   0.0    1.1  1  TIGR00390 hslU: ATP-dependent protease HslVU, ATPase subunit
    3.9e-05   21.1   0.0    5.9e-05   20.5   0.0    1.2  1  TIGR02640 gas_vesic_GvpN: gas vesicle protein GvpN
    0.00036   17.5   0.0     0.0005   17.0   0.0    1.1  1  TIGR00382 clpX: ATP-dependent Clp protease, ATP-binding subunit ClpX
    0.00054   16.5   0.1    0.00097   15.6   0.1    1.4  1  TIGR00368 TIGR00368: Mg chelatase-like protein
     0.0009   16.2   0.0     0.0015   15.4   0.0    1.3  1  TIGR00635 ruvB: Holliday junction DNA helicase RuvB
     0.0051   13.5   0.0     0.0079   12.9   0.0    1.2  1  TIGR02928 TIGR02928: orc1/cdc6 family replication initiation protein
     0.0062   12.8   0.1     0.0077   12.5   0.0    1.1  1  TIGR00763 lon: ATP-dependent protease La
     0.0065   13.4   0.0      0.012   12.5   0.0    1.4  1  TIGR02881 spore_V_K: stage V sporulation protein K
     0.0085   12.5   0.0      0.012   12.0   0.0    1.2  1  TIGR00764 lon_rel: putative ATP-dependent protease
  ------ inclusion threshold ------
      0.028   12.3   0.1      0.045   11.6   0.0    1.2  1  TIGR02173 cyt_kin_arch: putative cytidylate kinase
      0.032   11.7   0.0      0.078   10.4   0.0    1.6  1  TIGR00678 holB: DNA polymerase III, delta' subunit
      0.035   10.1   0.0      0.046    9.7   0.0    1.1  1  TIGR02639 ClpA: ATP-dependent Clp protease ATP-binding subunit ClpA


Domain annotation for each model (and alignments):
>> TIGR01241  FtsH_fam: ATP-dependent metallopeptidase HflB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  133.6   0.0   7.8e-42   1.9e-39      19     142 ..     110     230 ..      93     231 .. 0.84
   2 !   71.3   0.1   6.1e-23   1.5e-20     174     235 ..     230     291 ..     230     292 .] 0.98

  Alignments for each domain:
  == domain 1    score: 133.6 bits;  conditional E-value: 7.8e-42
   TIGR01241  19 lfllflrqakgaggsrifslgkskaklleeekvkvtfkdvaGideakeelveivdfLknpkkftklGakiPkGvllvGpPGtGktLlakavaGeagvpffsisGsdfvemfvGvGasrvrDlfe 142
                   +l++r+++  g     s   +   +++++   v f+dv G+  +k ++ e+vdf+++p+++ +lGa+ P+G+ll GpPGtGktLla+avaG agvpf+  sGsdfve++vG G+ rvr lfe
  MMETSP1137-20121227|5077_1 110 CGWLLWRMSSDLGM---NSARDADPAAAMDSGAAVDFEDVGGMPHVKAQVEEVVDFFHRPERYLSLGARQPRGILLAGPPGTGKTLLARAVAGTAGVPFLCCSGSDFVEVYVGRGSRRVRTLFE 230
                 34455555555552...3455566667778899******************************************************************************************8 PP

  == domain 2    score: 71.3 bits;  conditional E-value: 6.1e-23
   TIGR01241 174 ereqtLnqlLvemDGfetnegvivlaatnrpdvLDkaLlrPGrfDrqvvvdkPdlkgreeil 235
                 e e+tLnqlL++mDG +++  ++v+ atnr   LD+aL+rPGrfDr +++ +Pd  gr +il
  MMETSP1137-20121227|5077_1 230 EXEHTLNQLLAQMDGVGSSARILVIGATNRLAALDPALVRPGRFDRVLQLPLPDDVGRVQIL 291
                 679**********************************************************8 PP

>> TIGR01242  26Sp45: 26S proteasome subunit P45 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.2   0.0   1.9e-23   4.6e-21     117     209 ..     139     230 ..     127     233 .. 0.93
   2 !   66.8   0.2   1.6e-21     4e-19     242     302 ..     231     291 ..     230     292 .] 0.97

  Alignments for each domain:
  == domain 1    score: 73.2 bits;  conditional E-value: 1.9e-23
   TIGR01242 117 pevsyediGGlekqlreireavelplkkpelfeevGieppkGvllyGppGtGktllakavaeetnatfirvvgselvkkyiGeGarlvrevfk 209
                   v +ed+GG+ +   +++e+v++ +++pe +  +G   p+G+ll GppGtGktlla+ava  +   f+   gs++v+ y+G G+r vr +f+
  MMETSP1137-20121227|5077_1 139 AAVDFEDVGGMPHVKAQVEEVVDF-FHRPERYLSLGARQPRGILLAGPPGTGKTLLARAVAGTAGVPFLCCSGSDFVEVYVGRGSRRVRTLFE 230
                 6799*******9999999999887.799****************************************************************8 PP

  == domain 2    score: 66.8 bits;  conditional E-value: 1.6e-21
   TIGR01242 242 vqrtllqllaeldGfdprgnvkviaatnrldildpallrpGrfdrlievplpdleGrleil 302
                  + tl qlla++dG  +   + vi+atnrl  ldpal+rpGrfdr++++plpd  Gr++il
  MMETSP1137-20121227|5077_1 231 XEHTLNQLLAQMDGVGSSARILVIGATNRLAALDPALVRPGRFDRVLQLPLPDDVGRVQIL 291
                 678*********************************************************8 PP

>> TIGR01243  CDC48: AAA family ATPase, CDC48 subfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.6   0.0   6.2e-22   1.5e-19     175     265 ..     141     230 ..     135     235 .. 0.57
   2 !   56.8   0.1   1.1e-18   2.7e-16     574     631 ..     234     291 ..     231     292 .] 0.85

  Alignments for each domain:
  == domain 1    score: 67.6 bits;  conditional E-value: 6.2e-22
   TIGR01243 175 vtyedigglkeavkkirelvelplkhpelfeklgieppkgvllygppgtgktllakavaneagayfiaingpeimskyygeseerlreifk 265
                 v +ed+gg+   + ++ e+v++ ++ pe +  lg   p+g+ll gppgtgktlla+ava  ag  f++  g + +  y+g   +r+r +f+
  MMETSP1137-20121227|5077_1 141 VDFEDVGGMPHVKAQVEEVVDF-FHRPERYLSLGARQPRGILLAGPPGTGKTLLARAVAGTAGVPFLCCSGSDFVEVYVGRGSRRVRTLFE 230
                 5556666666666666666654.34456666666666666666666666666666666666666666666666666666666666665554 PP

  == domain 2    score: 56.8 bits;  conditional E-value: 1.1e-18
   TIGR01243 574 ivnqllteldgleensdvvviaatnrpdildpallrpgrldrlilvpapdeearleif 631
                  +nqll+++dg+  +  ++vi+atnr   ldpal+rpgr+dr++ +p pd+  r++i+
  MMETSP1137-20121227|5077_1 234 TLNQLLAQMDGVGSSARILVIGATNRLAALDPALVRPGRFDRVLQLPLPDDVGRVQIL 291
                 6799999999999999999999999999999999999999999999999999998875 PP

>> TIGR03689  pup_AAA: proteasome ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.8   0.0   4.9e-17   1.2e-14     177     280 ..     139     231 ..     125     235 .. 0.91
   2 !   40.9   0.2   9.3e-14   2.2e-11     319     373 ..     236     290 ..     231     292 .] 0.91

  Alignments for each domain:
  == domain 1    score: 51.8 bits;  conditional E-value: 4.9e-17
   TIGR03689 177 PdvtyadiGGldsqieqirdavelPflhkelyreydlkpPkGvllyGPPGcGktliakavanslaekvaedgeaksyflnikGPellnkyvGeterqirlifer 280
                   v ++d+GG+ +   q+ + v++ f ++e y   + + P+G+ll GPPG+Gktl+a+ava + +            fl   G ++++ yvG   r++r +fe 
  MMETSP1137-20121227|5077_1 139 AAVDFEDVGGMPHVKAQVEEVVDF-FHRPERYLSLGARQPRGILLAGPPGTGKTLLARAVAGTAG----------VPFLCCSGSDFVEVYVGRGSRRVRTLFEX 231
                 5699*******9999999999997.999********************************97543..........46*************************85 PP

  == domain 2    score: 40.9 bits;  conditional E-value: 9.3e-14
   TIGR03689 319 PqllaeldGveslenviviGasnredlidPailrPGrldvkirierPdaeaaadi 373
                  qlla++dGv s   ++viGa+nr   +dPa++rPGr+d  +++  Pd  +  +i
  MMETSP1137-20121227|5077_1 236 NQLLAQMDGVGSSARILVIGATNRLAALDPALVRPGRFDRVLQLPLPDDVGRVQI 290
                 6**************************************9999999998877666 PP

>> TIGR03922  T7SS_EccA: type VII secretion AAA-ATPase EccA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.9   0.0   6.3e-09   1.5e-06     256     334 ..     124     199 ..     115     217 .. 0.81

  Alignments for each domain:
  == domain 1    score: 24.9 bits;  conditional E-value: 6.3e-09
   TIGR03922 256 edaaaaerkaklLaEaeaeLakqiGlervkeqvaalkssvevalvRaerGlav.aqrskHlllaGPPGtGkttiArvvak 334
                 + a+ a+ +a +   a  + + + G+ +vk qv+ + +       R er l+  a + + +llaGPPGtGkt +Ar+va 
  MMETSP1137-20121227|5077_1 124 NSARDADPAAAMDSGAAVDFEDVGGMPHVKAQVEEVVDF----FHRPERYLSLgARQPRGILLAGPPGTGKTLLARAVAG 199
                 4556667777777778888888999*******9988776....56888888873567899******************85 PP

>> TIGR00390  hslU: ATP-dependent protease HslVU, ATPase subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.1   0.0   5.7e-08   1.4e-05      47      93 ..     177     222 ..     173     241 .. 0.88

  Alignments for each domain:
  == domain 1    score: 22.1 bits;  conditional E-value: 5.7e-08
   TIGR00390  47 PknilmiGstGvGkteiarrlaklaeaPfikveatkftevGyvGrdv 93 
                 P+ il+ G+ G Gkt +ar +a  a++Pf+    + f ev yvGr  
  MMETSP1137-20121227|5077_1 177 PRGILLAGPPGTGKTLLARAVAGTAGVPFLCCSGSDFVEV-YVGRGS 222
                 999************************************9.9**974 PP

>> TIGR02640  gas_vesic_GvpN: gas vesicle protein GvpN
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   0.0   2.4e-07   5.9e-05       4      56 ..     156     212 ..     153     224 .. 0.86

  Alignments for each domain:
  == domain 1    score: 20.5 bits;  conditional E-value: 2.4e-07
   TIGR02640   4 teevkrvtsralrylksg....ypvhlrGPaGtGktslalhvakkrdrPvvllnGda 56 
                  eev +  +r +ryl+ g    + + l GP GtGkt la++va + + P +   G +
  MMETSP1137-20121227|5077_1 156 VEEVVDFFHRPERYLSLGarqpRGILLAGPPGTGKTLLARAVAGTAGVPFLCCSGSD 212
                 578888899******9884444579************************99998875 PP

>> TIGR00382  clpX: ATP-dependent Clp protease, ATP-binding subunit ClpX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.0   2.1e-06    0.0005     119     160 ..     179     219 ..     174     239 .. 0.88

  Alignments for each domain:
  == domain 1    score: 17.0 bits;  conditional E-value: 2.1e-06
   TIGR00382 119 nilliGptGsGktllaqtlakeldvpfaiadattlteaGyvG 160
                  ill Gp G+Gktlla+++a +  vpf  +  + + e  yvG
  MMETSP1137-20121227|5077_1 179 GILLAGPPGTGKTLLARAVAGTAGVPFLCCSGSDFVEV-YVG 219
                 59*************************99888877775.776 PP

>> TIGR00368  TIGR00368: Mg chelatase-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.1     4e-06   0.00097     200     233 ..     166     199 ..     117     206 .. 0.80

  Alignments for each domain:
  == domain 1    score: 15.6 bits;  conditional E-value: 4e-06
   TIGR00368 200 akraleiaaaGghnllllGPPGsGktllakrlqg 233
                   r l + a     +ll GPPG+Gktlla+ + g
  MMETSP1137-20121227|5077_1 166 PERYLSLGARQPRGILLAGPPGTGKTLLARAVAG 199
                 45667777777789****************9877 PP

>> TIGR00635  ruvB: Holliday junction DNA helicase RuvB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   6.3e-06    0.0015      31      63 ..     178     210 ..     154     215 .. 0.86

  Alignments for each domain:
  == domain 1    score: 15.4 bits;  conditional E-value: 6.3e-06
   TIGR00635  31 dhvllyGPPGlGkttlakiiakelgvklkitsg 63 
                   +ll+GPPG Gkt la+ +a + gv     sg
  MMETSP1137-20121227|5077_1 178 RGILLAGPPGTGKTLLARAVAGTAGVPFLCCSG 210
                 569******************988876666555 PP

>> TIGR02928  TIGR02928: orc1/cdc6 family replication initiation protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.9   0.0   3.3e-05    0.0079      37      61 ..     174     198 ..     149     203 .. 0.86

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 3.3e-05
   TIGR02928  37 gsrpsnvliyGktGtGKtavtkkvl 61 
                  ++p+ +l+ G++GtGKt+ +++v 
  MMETSP1137-20121227|5077_1 174 ARQPRGILLAGPPGTGKTLLARAVA 198
                 579*****************99986 PP

>> TIGR00763  lon: ATP-dependent protease La
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.5   0.0   3.2e-05    0.0077     355     384 ..     179     208 ..     144     225 .. 0.78

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 3.2e-05
   TIGR00763 355 ilclvGPPGVGKtSlaksiAkalnrkfvrl 384
                  + l GPPG GKt la+++A + +  f+  
  MMETSP1137-20121227|5077_1 179 GILLAGPPGTGKTLLARAVAGTAGVPFLCC 208
                 5789****************9888777655 PP

>> TIGR02881  spore_V_K: stage V sporulation protein K
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.5   0.0     5e-05     0.012       5      64 ..     143     199 ..     140     234 .. 0.74

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 5e-05
   TIGR02881   5 leklvGleevkelikeiyalilinekrkeeglkaekqvlhmifkGnPGtGkttvarllak 64 
                 +e + G+ +vk++++e+  + +  e+    g +   q   +++ G PGtGkt +ar +a 
  MMETSP1137-20121227|5077_1 143 FEDVGGMPHVKAQVEEVVDFFHRPERYLSLGAR---QPRGILLAGPPGTGKTLLARAVAG 199
                 566779999999999999998655555555544...4556789*************9985 PP

>> TIGR00764  lon_rel: putative ATP-dependent protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.0   0.0     5e-05     0.012      33      58 ..     173     198 ..     141     202 .. 0.88

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 5e-05
   TIGR00764  33 aakqkrnvlliGePGvGksmlakama 58 
                  a+q r +ll G PG+Gk++la+a+a
  MMETSP1137-20121227|5077_1 173 GARQPRGILLAGPPGTGKTLLARAVA 198
                 68999*******************98 PP

>> TIGR02173  cyt_kin_arch: putative cytidylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   0.00019     0.045       3      30 ..     180     207 ..     179     214 .. 0.88

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 0.00019
   TIGR02173   3 ivisGpPGsGkttvakilaeklslklis 30 
                 i ++GpPG+Gkt +a+ +a + ++ +++
  MMETSP1137-20121227|5077_1 180 ILLAGPPGTGKTLLARAVAGTAGVPFLC 207
                 7789***************999998876 PP

>> TIGR00678  holB: DNA polymerase III, delta' subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   0.00032     0.078      12      36 ..     175     199 ..     167     210 .. 0.88

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 0.00032
   TIGR00678  12 rlahAlLfaGpeGvGkealaealak 36 
                 r +  +L+aGp+G+Gk+ la+a+a 
  MMETSP1137-20121227|5077_1 175 RQPRGILLAGPPGTGKTLLARAVAG 199
                 667899****************985 PP

>> TIGR02639  ClpA: ATP-dependent Clp protease ATP-binding subunit ClpA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.0   0.00019     0.046     486     525 ..     177     215 ..     154     219 .. 0.85

  Alignments for each domain:
  == domain 1    score: 9.7 bits;  conditional E-value: 0.00019
   TIGR02639 486 PvgsflfvGptGvGktelakqLaeelgvellrfDmseyme 525
                 P g  l +Gp G Gkt la+++a + gv +l    s++ e
  MMETSP1137-20121227|5077_1 177 PRG-ILLAGPPGTGKTLLARAVAGTAGVPFLCCSGSDFVE 215
                 555.5789**********************9998888877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (292 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       205  (0.0499756); expected 82.0 (0.02)
Passed bias filter:                      191  (0.0465627); expected 82.0 (0.02)
Passed Vit filter:                        68  (0.0165773); expected 4.1 (0.001)
Passed Fwd filter:                        17  (0.00414432); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              17  [number of targets reported over threshold]
# CPU time: 0.46u 0.18s 00:00:00.64 Elapsed: 00:00:00.55
# Mc/sec: 700.74
//
Query:       MMETSP1137-20121227|5078_1  [L=246]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (246 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       103  (0.0251097); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.14s 00:00:00.36 Elapsed: 00:00:00.37
# Mc/sec: 877.55
//
Query:       MMETSP1137-20121227|5079_1  [L=846]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.13    7.7   8.4       0.17    7.3   5.8    1.0  1  TIGR02169 SMC_prok_A: chromosome segregation protein SMC
        3.1    6.3   9.6        6.5    5.2   6.6    1.4  1  TIGR01410 tatB: twin arginine-targeting protein translocase TatB
        3.8    4.2  12.3        5.5    3.7   8.5    1.1  1  TIGR02889 spore_YpeB: germination protein YpeB
        4.9    3.8  10.6        7.3    3.3   7.4    1.1  1  TIGR00414 serS: serine--tRNA ligase
        5.7    3.9  20.1        9.5    3.2  14.0    1.2  1  TIGR03752 conj_TIGR03752: integrating conjugative element protein, PFL_4705 family
        6.5    3.1   6.4        9.3    2.6   4.4    1.1  1  TIGR00437 feoB: ferrous iron transport protein B
        8.5    3.5   8.6         12    3.0   6.0    1.1  1  TIGR02872 spore_ytvI: sporulation integral membrane protein YtvI


Domain annotation for each model (and alignments):
>> TIGR02169  SMC_prok_A: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   5.8   0.00029      0.17     882     942 ..     728     790 ..     718     802 .. 0.41

  Alignments for each domain:
  == domain 1    score: 7.3 bits;  conditional E-value: 0.00029
   TIGR02169 882 eeelkdLkkereeleaelr.elekkkeeleaeiekkr.krlkelkaklealeeelseleeevk 942
                  ++ ++L++++++++++++ ++++++++++ +++++  +++++++a l+++++ +++l+++++
  MMETSP1137-20121227|5079_1 728 AQRIQQLQQQMQQVQQQMQqQMQQRIQQMQQQLQQQMqQQQQQQQAPLSVAAHTMATLQQQQQ 790
                 233334444444444443212334444444444333202222333334444444444444332 PP

>> TIGR01410  tatB: twin arginine-targeting protein translocase TatB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   6.6     0.011       6.5      23      75 ..     723     773 ..     720     778 .. 0.61

  Alignments for each domain:
  == domain 1    score: 5.2 bits;  conditional E-value: 0.011
   TIGR01410  23 rLPkairavgklvralrklasdvkneldeelk..leelkeelkeveklrilnlta 75 
                  LP+ ++ + +l ++++++ +++++++++ ++  +++l+++++     + ++ +a
  MMETSP1137-20121227|5079_1 723 SLPQQAQRIQQLQQQMQQVQQQMQQQMQQRIQqmQQQLQQQMQ----QQQQQQQA 773
                 5777777777777777777777777777766544455555555....44444444 PP

>> TIGR02889  spore_YpeB: germination protein YpeB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   8.5    0.0093       5.5     125     189 ..     726     791 ..     715     795 .. 0.70

  Alignments for each domain:
  == domain 1    score: 3.7 bits;  conditional E-value: 0.0093
   TIGR02889 125 keyktleklrnqaekleeqLkk.vqkkvkegglrwgeirkklskklaradeailndfkeveksveq 189
                 ++ + +++l++q +++++q+++ +q+++++ + +++++ ++++++ + + +  + ++++++++ +q
  MMETSP1137-20121227|5079_1 726 QQAQRIQQLQQQMQQVQQQMQQqMQQRIQQMQQQLQQQMQQQQQQQQAPLSVAAHTMATLQQQQQQ 791
                 456789999999999999997526667766666666655555555554445455559999999877 PP

>> TIGR00414  serS: serine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   7.4     0.012       7.3      40      87 ..     725     773 ..     710     795 .. 0.65

  Alignments for each domain:
  == domain 1    score: 3.3 bits;  conditional E-value: 0.012
   TIGR00414  40 kkllskieelqkkrnelskeigkkkaekkdk.ieelkkelkelkeelee 87 
                  ++ ++i++lq++ ++++++++++++++ ++  ++l++++++++++ ++
  MMETSP1137-20121227|5079_1 725 PQQAQRIQQLQQQMQQVQQQMQQQMQQRIQQmQQQLQQQMQQQQQQQQA 773
                 5667889999999999999999988877777455588887776665332 PP

>> TIGR03752  conj_TIGR03752: integrating conjugative element protein, PFL_4705 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2  14.0     0.016       9.5      78     148 ..     724     788 ..     718     796 .. 0.52

  Alignments for each domain:
  == domain 1    score: 3.2 bits;  conditional E-value: 0.016
   TIGR03752  78 lekeNeklkkenerlkkreesvderiqqaleaekkelkkekeqlkeeqakleelldelqkkledvaaekes 148
                 l ++ +++++ ++++++ ++++++++qq++++ +++l+++ +q++++q+   +  ++++  l+      ++
  MMETSP1137-20121227|5079_1 724 LPQQAQRIQQLQQQMQQVQQQMQQQMQQRIQQMQQQLQQQMQQQQQQQQAPLSVAAHTMATLQ------QQ 788
                 555666666666666666666666666666666666666666655555533333222222222......22 PP

>> TIGR00437  feoB: ferrous iron transport protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   4.4     0.016       9.3     180     241 ..     725     787 ..     701     794 .. 0.71

  Alignments for each domain:
  == domain 1    score: 2.6 bits;  conditional E-value: 0.016
   TIGR00437 180 eklkelkqkl.kkglevleglleeraleiekiekelaevvkkesesklsateiadeekvlvek 241
                 ++  + +q+l +++++v +++ +++++ i++++++l++ +++++++++  + +a ++  ++++
  MMETSP1137-20121227|5079_1 725 PQQAQRIQQLqQQMQQVQQQMQQQMQQRIQQMQQQLQQQMQQQQQQQQAPLSVAAHTMATLQQ 787
                 444555566657777777777788888889999999999999998888888877775444444 PP

>> TIGR02872  spore_ytvI: sporulation integral membrane protein YtvI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   6.0     0.021        12      86     127 ..     729     770 ..     714     793 .. 0.49

  Alignments for each domain:
  == domain 1    score: 3.0 bits;  conditional E-value: 0.021
   TIGR02872  86 kklpqylseikeaikkllkeleslleslpeevqktikeniet 127
                 + ++q+ ++++++ +++++++++++++++++ q++++++ ++
  MMETSP1137-20121227|5079_1 729 QRIQQLQQQMQQVQQQMQQQMQQRIQQMQQQLQQQMQQQQQQ 770
                 333333333333333333333333333333333333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (846 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                      1127  (0.274744); expected 82.0 (0.02)
Passed bias filter:                      617  (0.150414); expected 82.0 (0.02)
Passed Vit filter:                       171  (0.041687); expected 4.1 (0.001)
Passed Fwd filter:                        14  (0.00341297); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 1.53u 0.28s 00:00:01.81 Elapsed: 00:00:01.38
# Mc/sec: 809.15
//
Query:       MMETSP1137-20121227|5080_1  [L=214]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (214 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        69  (0.0168211); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.14s 00:00:00.33 Elapsed: 00:00:00.39
# Mc/sec: 724.25
//
Query:       MMETSP1137-20121227|5081_1  [L=423]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (423 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       203  (0.0494881); expected 82.0 (0.02)
Passed bias filter:                       98  (0.0238908); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.17s 00:00:00.51 Elapsed: 00:00:00.82
# Mc/sec: 680.87
//
Query:       MMETSP1137-20121227|5082_1  [L=178]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (178 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        38  (0.00926377); expected 82.0 (0.02)
Passed bias filter:                       33  (0.00804486); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.14s 00:00:00.32 Elapsed: 00:00:00.40
# Mc/sec: 587.35
//
Query:       MMETSP1137-20121227|5083_1  [L=1687]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1687 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       230  (0.0560702); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.89u 0.16s 00:00:01.05 Elapsed: 00:00:00.68
# Mc/sec: 3274.49
//
Query:       MMETSP1137-20121227|5084_1  [L=225]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0012   16.7   0.0     0.0017   16.2   0.0    1.2  1  TIGR00568 alkb: alkylated DNA repair protein AlkB


Domain annotation for each model (and alignments):
>> TIGR00568  alkb: alkylated DNA repair protein AlkB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0   4.1e-07    0.0017      72     165 ..      61     152 ..      54     161 .. 0.78

  Alignments for each domain:
  == domain 1    score: 16.2 bits;  conditional E-value: 4.1e-07
   TIGR00568  72 sPdfPkdlgdlvekrvaealgfedfkaeaalvnlYapgatlslHiDrsEeDlrlPllslslGldaifllGglkRsekp.kalrlesGDvviltGe 165
                  P +Pk +  +++  v + + + + +++  lvn Y+pg+ +  H D     +r+ +l  slG ++ f +   + + k+  +l+l    ++i+ Ge
  MMETSP1137-20121227|5084_1  61 EP-LPKIMISICQALVDAGIFDAEAPPNHVLVNEYQPGQGIEPHRDGPIYAPRVAIL--SLGSQCRFDFVHNDPQRKLyGSLLLPRKGLLIFDGE 152
                 56.99*****************************************99988888886..689999998765544433313455555555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (225 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        32  (0.00780107); expected 82.0 (0.02)
Passed bias filter:                       32  (0.00780107); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.20u 0.13s 00:00:00.33 Elapsed: 00:00:00.33
# Mc/sec: 899.93
//
Query:       MMETSP1137-20121227|5085_1  [L=461]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      8e-47  157.5   0.0    4.8e-45  151.6   0.0    2.0  1  TIGR01179 galE: UDP-glucose 4-epimerase
    3.7e-37  125.9   0.0    4.8e-37  125.6   0.0    1.0  1  TIGR01181 dTDP_gluc_dehyt: dTDP-glucose 4,6-dehydratase
      2e-31  107.0   0.0    2.5e-31  106.7   0.0    1.1  1  TIGR04180 EDH_00030: NAD dependent epimerase/dehydratase, LLPSF_EDH_00030 family
    9.9e-31  104.9   0.0    1.3e-30  104.5   0.0    1.1  1  TIGR02197 heptose_epim: ADP-glyceromanno-heptose 6-epimerase
    5.5e-18   63.0   0.0    3.1e-13   47.4   0.0    2.1  2  TIGR02622 CDP_4_6_dhtase: CDP-glucose 4,6-dehydratase
    1.2e-11   42.3   0.0    3.8e-11   40.6   0.1    1.7  2  TIGR01472 gmd: GDP-mannose 4,6-dehydratase
    8.5e-09   32.5   0.1    1.4e-07   28.5   0.1    2.3  2  TIGR03466 HpnA: hopanoid-associated sugar epimerase
     0.0034   14.8   0.0      0.015   12.7   0.0    1.9  1  TIGR01777 yfcH: TIGR01777 family protein
      0.004   14.2   2.0       0.72    6.8   0.4    2.2  2  TIGR01746 Thioester-redct: thioester reductase domain
  ------ inclusion threshold ------
      0.016   11.9   0.0      0.035   10.9   0.0    1.6  1  TIGR03589 PseB: UDP-N-acetylglucosamine 4,6-dehydratase


Domain annotation for each model (and alignments):
>> TIGR01179  galE: UDP-glucose 4-epimerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  151.6   0.0   1.2e-47   4.8e-45       2     327 ..     123     441 ..     122     445 .. 0.88

  Alignments for each domain:
  == domain 1    score: 151.6 bits;  conditional E-value: 1.2e-47
   TIGR01179   2 iLvtGgaGyiGshvvrqllekgkevvvlDnlskgskealkalekit.........evklvegdladkekleavleeekidaviHfaaliavgEsvkePlkYYennvvntleLleamqkagvk.kliFsssaavYgesekvpisEespln.pinpYGrsklmvErilkdlkkadkelkvviLRYFnvaGAdeegeiGeasknathliklvaevavgkrekleifGtdyptkDGtcv.RDyiHveDlaeaHlaalealeeggesevynlGagqgfsvkevieavkkvsgkdikveladrRaGDpaslvadaskikrelgwkpkyddLeeiiksawdWekk 327
                 +L+tG+aG+iG h++  l ++g  v+ lDn  +  + +lk+ +            +++l+egd+ d e l+ +l+e ++  viH+aa++ v  s+++Pl Y e nv+  ++Llea+++++ k  + ++ss++vYg ++++p+sEe+++   ++ YG++k   E+i + +++  ++lk++ LR+F v G     ++   s   t+       + +gk  ++     +y  +DGt + RD+  v+D+ ++ +a+++    g+e ev+nlG+ +   v  +i+ +++  g++ + + a+  aGD++  +ad s+++r l+++p+   Le+ i++ ++W + 
  MMETSP1137-20121227|5085_1 123 VLLTGAAGFIGFHTALDLHASGDVVIGLDNFNHYYTVSLKRSRAELlkkaalkgpALHLIEGDVCDGELLKLLLQEGRVTNVIHLAAQAGVRYSLTNPLAYVEANVKCFVTLLEAVKTVNKKiPITYASSSSVYGLNTQIPFSEEHQIDrQASLYGATKKSNENIAHVYHHL-HGLKLTGLRFFTVYGPYGRPDMAYFSF--TQA------ILAGK--QI----VEYRREDGTELeRDFTFVSDIVSGIVASMRL---GAELEVFNLGNTHPEKVSRLISLLERGLGRTANKTTAPISAGDVPITYADVSHAQRLLDYHPSVS-LEQGIRQFLNWYSA 441
                 89****************************877666666554322122333457899************************************************************998764799********************999899********************.**************9765555543332..222......22333..22....38*******987***************9986...568*************************************************************9.***********875 PP

>> TIGR01181  dTDP_gluc_dehyt: dTDP-glucose 4,6-dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  125.6   0.0   1.2e-39   4.8e-37       2     313 ..     123     441 ..     122     445 .. 0.88

  Alignments for each domain:
  == domain 1    score: 125.6 bits;  conditional E-value: 1.2e-39
   TIGR01181   2 lLvtGGaGfiGsnfvryileetpdaevvvlDkLt..ya.....gnkenlkdle.deerysfvkgdiadrelverllkeedvdavvnfaaeshvDrsisepeafietnvvGtytlleavrkelkevrllhistDevyGdlekddaeftettpl.aPssPysaskaasdllvrayartyglpvlitrcsnnyGpyqfpekliPllitnalagkklpvy..GdGqqv.rDwlyveDhcraielvlekgrvgevyniggeeertnlevvkiilelldkdedlieyvedrpGhDrryaldaskikreLgwkpkvtfeeglrktvkWyle 313
                 +L+tG aGfiG       l+  +d+ v+ lD+++  y+     ++ e lk+ + + +++++++gd++d el++ ll+e +v  v+++aa++ v  s+++p a++e+nv    tlleav++ +k++ +   s   vyG  ++    f+e++++    s y a+k + + + + y++ +gl+ +  r    yGpy  p+     + + +lagk+++ y   dG+++ rD+ +v+D +++i + ++ g + ev+n+g  + +++  +++++ + l+++ ++ +   +     + ya d+s+ +r L ++p+v++e+g+r+ ++Wy +
  MMETSP1137-20121227|5085_1 123 VLLTGAAGFIGFHTA-LDLHASGDV-VIGLDNFNhyYTvslkrSRAELLKKAAlKGPALHLIEGDVCDGELLKLLLQEGRVTNVIHLAAQAGVRYSLTNPLAYVEANVKCFVTLLEAVKTVNKKIPITYASSSSVYGLNTQI--PFSEEHQIdRQASLYGATKKSNENIAHVYHHLHGLKLTGLRFFTVYGPYGRPDMAYFSFTQAILAGKQIVEYrrEDGTELeRDFTFVSDIVSGIVASMRLGAELEVFNLGNTHPEKVSRLISLLERGLGRTANKTTAPISAGDVPITYA-DVSHAQRLLDYHPSVSLEQGIRQFLNWYSA 441
                 699********8654.445666677.99***9863243222224445555433245899******************************************************************************66555..46666555167899**********************************************************5558999879************************************************9999988887777778887.9***************************75 PP

>> TIGR04180  EDH_00030: NAD dependent epimerase/dehydratase, LLPSF_EDH_00030 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  106.7   0.0   6.2e-34   2.5e-31       1     295 [.     123     425 ..     123     427 .. 0.82

  Alignments for each domain:
  == domain 1    score: 106.7 bits;  conditional E-value: 6.2e-34
   TIGR04180   1 vlvtGadGfiGshlvealvekGaevralvlynsfnswGw....ldevekevkk..eievvlGdirdaesvkkavkg..vdvvfhlaaliaiPysyvapesyvetnvkGtlnvlqaardlevek.vvhtstsevyGtaqyvPidekhplqaq.sPysaskigadqlalsfyrsfelPvaivrPfntyGPrqsaraviPtiitqilsgkkkiklGslsPt...rdfnyvkdtvegfiavaesdkavGevinigsnfeisigdtvkliaeilgkeveivtdeerlrPekseverlladnskikeltgwkpk 295
                 vl+tGa GfiG h +  l ++G  v  l ++n + +        + ++k++ k  +++++ Gd+ d e +k  +++  v+ v+hlaa  ++ ys + p +yve+nvk  + +l+a + ++ +  +  +s+s vyG    +P +e+h++  q s y a+k + +++a  +++   l ++ +r f  yGP         +  + il+gk+ ++      t   rdf++v+d+v+g++a ++  + + ev+n+g+ +   ++ +++l+++ lg +     +++    ++ +v   +ad s++++l++++p+
  MMETSP1137-20121227|5085_1 123 VLLTGAAGFIGFHTALDLHASGDVVIGLDNFNHYYTVSLkrsrAELLKKAALKgpALHLIEGDVCDGELLKLLLQEgrVTNVIHLAAQAGVRYSLTNPLAYVEANVKCFVTLLEAVKTVNKKIpITYASSSSVYGLNTQIPFSEEHQIDRQaSLYGATKKSNENIAHVYHHLHGLKLTGLRFFTVYGPYGRPDMAYFSFTQAILAGKQIVEYRREDGTeleRDFTFVSDIVSGIVASMRLGAEL-EVFNLGNTHPEKVSRLISLLERGLGRTA----NKTTAPISAGDVPITYADVSHAQRLLDYHPS 425
                 79**********************9999888876554430001333333333223799*************9998644789************************************9986642667899******************988578***********************************9999999999999******9998766555444*************9988877665.8999999998777777777776666544....4444445667788888888888888888876 PP

>> TIGR02197  heptose_epim: ADP-glyceromanno-heptose 6-epimerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  104.5   0.0   3.1e-33   1.3e-30       1     314 [.     123     440 ..     123     442 .. 0.86

  Alignments for each domain:
  == domain 1    score: 104.5 bits;  conditional E-value: 3.1e-33
   TIGR02197   1 iivTGgaGfiGsnlvaalnekgetdilvvDklrk...............gekllnlkdeeiadyidkeellerlekeelkkveavfHegAisdT..teldgellmenNyeyskellel..caekevkliYASSAavYG.dseeefreekelerPlNvYgySKllfDelvrkevlkekksaqvvGlryFNVyGprEehKgkmaSvvfklfnqikkekkvkLFksseqlkdGeqlRDFvyvkDvvkvnllllekkeksGifnvGtgkarsfndlaaavvkalgkdekieyidmPealrgkyqkfTqadleklreagykkeflsleegvkdYvkell 314
                 +++TG+aGfiG   +  l+ +g + ++ +D++++                + l++ + + i +++ + ell+ l +e  ++v+ v+H +A +      ++    +e N++ + +lle+  +++k++++ YASS +vYG +++ +f+ee++  r   +Yg  K+  ++++   v ++ +  +++Glr+F VyGp    + +ma   f +++ i ++k++  ++ ++++   e  RDF++v+D+v+ ++  ++  ++  +fn+G  + ++ + l++ + + lg++   +    P +        T ad++++++ +++++ +sle+g++++++++ 
  MMETSP1137-20121227|5085_1 123 VLLTGAAGFIGFHTALDLHASG-DVVIGLDNFNHyytvslkrsraellkKAALKGPALHLIEGDVCDGELLKLLLQE--GRVTNVIHLAAQAGVrySLTNPLAYVEANVKCFVTLLEAvkTVNKKIPITYASSSSVYGlNTQIPFSEEHQIDRQASLYGATKKSNENIAH--VYHHLHGLKLTGLRFFTVYGPYG--RPDMA--YFSFTQAILAGKQIVEYRREDGT---ELERDFTFVSDIVSGIVASMRLGAELEVFNLGNTHPEKVSRLISLLERGLGRTA--NKTTAPISA--GDVPITYADVSHAQRLLDYHPSVSLEQGIRQFLNWYS 440
                 689***************9999.456669************99976654335566666789999********99986..9*********9987611457888889************833568999************445679***********************998..667888899************74..44555..67788999*****9999999998...699*******************99***************************755..555556553..3346799****************************97 PP

>> TIGR02622  CDP_4_6_dhtase: CDP-glucose 4,6-dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.4   0.0   7.5e-16   3.1e-13       4     169 ..     120     292 ..     118     297 .. 0.78
   2 !   13.4   0.0   1.7e-05    0.0068     254     334 ..     368     443 ..     346     446 .. 0.76

  Alignments for each domain:
  == domain 1    score: 47.4 bits;  conditional E-value: 7.5e-16
   TIGR02622   4 gkkvlvtGhtGfkGsWlslwLkelGaevaGys.....ldpetkpnlfellklakklkd..ssvlgdirdaeklekaieevkPeivfhlaaqplvrksYkdPletfetnvlGtvnlleavralesvkavvlvtsDkvYenkewvwgyretdalGG.hDpYsaskaaaelvvasyr 169
                  k vl+tG  Gf G   +l L+  G  v+G+        ++ k++  ellk a       + + gd+ d e l+ +++e +   v+hlaaq+ vr s ++Pl   e nv   v lleav++++++  +    s  vY  +  +  + e+ ++      Y a k + e +++ y+
  MMETSP1137-20121227|5085_1 120 RKVVLLTGAAGFIGFHTALDLHASGDVVIGLDnfnhyYTVSLKRSRAELLKKAALKGPalHLIEGDVCDGELLKLLLQEGRVTNVIHLAAQAGVRYSLTNPLAYVEANVKCFVTLLEAVKTVNKKIPITYASSSSVYGLNT-QIPFSEEHQIDRqASLYGATKKSNENIAHVYH 292
                 6889**************************7521111233344455555544433221225799***********************************************************999999999999997654.45677766665414678888888887777775 PP

  == domain 2    score: 13.4 bits;  conditional E-value: 1.7e-05
   TIGR02622 254 afnfGPeaeenkkvvelvkkalellagkkaeiekksdkeapheaklLkLdsdkakkklgwkprlsleeaveatveWykeay 334
                  fn+G ++   +kv +l++ +++ l     +++k++++ +  +  +   d+++a++ l+++p+ sle+ +++ ++Wy ++y
  MMETSP1137-20121227|5085_1 368 VFNLGNTH--PEKVSRLISLLERGLGR---TANKTTAPISAGDVPITYADVSHAQRLLDYHPSVSLEQGIRQFLNWYSAYY 443
                 56777655..55566666555444433...44444556677788888899***************************9766 PP

>> TIGR01472  gmd: GDP-mannose 4,6-dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.6   0.1   9.3e-14   3.8e-11       2     172 ..     122     294 ..     121     307 .. 0.76
   2 ?   -2.0   0.0      0.84   3.5e+02     307     335 ..     408     436 ..     403     438 .. 0.84

  Alignments for each domain:
  == domain 1    score: 40.6 bits;  conditional E-value: 9.3e-14
   TIGR01472   2 valitGitGqdGsylaelllekgyevhGlirr....sssfnterlehlyeekhkeekalflhyGdltdsssllklieeikpteiynlaaqshvkvsfeipeytadvdgiGtlrlleavrildlakkirfyqastselyGevkeipqkektpfnp.rspyaaaklyayyivvnyrea 172
                 v l+tG +G  G + a  l   g  v Gl       + s+  +r e l +    +  al+l  Gd++d+  l+ l++e + t++  laaq+ v+ s+  p   ++++    + lleav++++++  i    as+s +yG  ++ip +e+       s y+a+k     i+  y   
  MMETSP1137-20121227|5085_1 122 VVLLTGAAGFIGFHTALDLHASGDVVIGLDNFnhyyTVSLKRSRAELLKK-AALKGPALHLIEGDVCDGELLKLLLQEGRVTNVIHLAAQAGVRYSLTNPLAYVEANVKCFVTLLEAVKTVNKK--IPITYASSSSVYGLNTQIPFSEEHQIDRqASLYGATKKSNENIAHVYHHL 294
                 66777777777777777777777777777653111134555555554443.444446799999*************************************9999999999999******99765..555569**************999888651578999998776666666655 PP

  == domain 2    score: -2.0 bits;  conditional E-value: 0.84
   TIGR01472 307 lllGdatkakeklgwkrevslkelvkemv 335
                 +   d + a++ l++++ vsl++ +++ +
  MMETSP1137-20121227|5085_1 408 ITYADVSHAQRLLDYHPSVSLEQGIRQFL 436
                 55679999*************99998876 PP

>> TIGR03466  HpnA: hopanoid-associated sugar epimerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.5   0.1   3.5e-10   1.4e-07       2     145 ..     122     284 ..     121     294 .. 0.77
   2 ?    1.3   0.0     0.068        28     292     323 ..     409     441 ..     360     445 .. 0.87

  Alignments for each domain:
  == domain 1    score: 28.5 bits;  conditional E-value: 3.5e-10
   TIGR03466   2 kvlvtGatGFvGsavvrllleeGeevrvl...........vrktsd...rrnleeldvEiveGdlkdeaslkkalkG..cealfHvAAdy..rlwakdpeelykanvegtravleaAleagver.vvytssvatlgvkedgkeadettpsklekmiGhYkrsk 145
                  vl+tGa+GF+G + +  l ++G  v  l           +r+ ++   ++ l++    ++eGd+ d + lk  l+   +++++H+AA+   r   ++p + ++anv+   ++lea ++ + +  + y+ss ++ g++++   ++e++  +++++ G+ k+s 
  MMETSP1137-20121227|5085_1 122 VVLLTGAAGFIGFHTALDLHASGDVVIGLdnfnhyytvslKRSRAEllkKAALKGPALHLIEGDVCDGELLKLLLQEgrVTNVIHLAAQAgvRYSLTNPLAYVEANVKCFVTLLEAVKTVNKKIpITYASSSSVYGLNTQIPFSEEHQIDRQASLYGATKKSN 284
                 69*********************9886542211111111155555511133444455789***********99887424889*****986225667899999*************998776653388*************99999999999999999999985 PP

  == domain 2    score: 1.3 bits;  conditional E-value: 0.068
   TIGR03466 292 mffssakAereLgyrq.rpaeealkdaveWfra 323
                  + + + A+r L y+   ++e+++++ ++W+ a
  MMETSP1137-20121227|5085_1 409 TYADVSHAQRLLDYHPsVSLEQGIRQFLNWYSA 441
                 588999********862689**********986 PP

>> TIGR01777  yfcH: TIGR01777 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.7   0.0   3.7e-05     0.015       1     170 [.     123     312 ..     123     334 .. 0.74

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 3.7e-05
   TIGR01777   1 vlitGgtGliGralveelekkghevviltrskekekeekkesakevaee...............aeee........alegvdavinLaGepiadkrwteerkkeileSRikttealvelikkakqkpkvlisasavgyYgeseekelteee.eeagddFlaklceeWEeaaqaaekl.gvrvvllRtgivLgekG 170
                 vl+tG+ G+iG + +  l+++g+ v+ l   ++  + + k s +e  ++                  +        +  +v+ vi+La +  +  r++ ++  + +e  +k   +l+e++k  ++k+  +  as+ ++Yg +++ ++ ee+    +      + ++ E++a+  ++l g + + lR+  v g+ G
  MMETSP1137-20121227|5085_1 123 VLLTGAAGFIGFHTALDLHASGDVVIGLDNFNHYYTVSLKRSRAELLKKaalkgpalhliegdvC--DgellklllQEGRVTNVIHLAAQAGV--RYSLTNPLAYVEANVKCFVTLLEAVKTVNKKI-PITYASSSSVYGLNTQIPFSEEHqIDRQASLYGATKKSNENIAHVYHHLhGLKLTGLRFFTVYGPYG 312
                 799********************999998877766666666665555554555555565555441..0556666656678999*****99877..9***************************8666.4566777789***********9953444446667777788888877664256888888888888777 PP

>> TIGR01746  Thioester-redct: thioester reductase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.8   0.4    0.0017      0.72       2      21 ..     123     142 ..     122     149 .. 0.85
   2 !    6.8   0.0    0.0018      0.74     110     192 ..     225     304 ..     200     396 .. 0.73

  Alignments for each domain:
  == domain 1    score: 6.8 bits;  conditional E-value: 0.0017
   TIGR01746   2 vlLTGAtGfLGaylleeLlr 21 
                 vlLTGA Gf+G + + +L +
  MMETSP1137-20121227|5085_1 123 VLLTGAAGFIGFHTALDLHA 142
                 9**********998888765 PP

  == domain 2    score: 6.8 bits;  conditional E-value: 0.0018
   TIGR01746 110 aaNVegtvevlrlaasgkakp.liyvStlsvlaaielsakvevddatetkkpglatGYaqSKwvaEllvreasdr.glpvtivRp 192
                 +aNV+  v++l+   + ++k+ ++y S+ sv+   +   ++ ++++ +   +  a+ Y+++K   E +        gl++t +R 
  MMETSP1137-20121227|5085_1 225 EANVKCFVTLLEAVKTVNKKIpITYASSSSVYGLNT---QIPFSEEHQIDRQ--ASLYGATKKSNENIAHVYHHLhGLKLTGLRF 304
                 69**************999988**********9755...3555555555555..3559999988888887766666666666665 PP

>> TIGR03589  PseB: UDP-N-acetylglucosamine 4,6-dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   8.5e-05     0.035      49     113 ..     173     239 ..     119     312 .. 0.79

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 8.5e-05
   TIGR03589  49 kfeedklrffiGdvrdkerleraled..vdlvvhaaalkqvpaaeynPleciktnieGaenvidaal 113
                   + + l    Gdv d e l+  l++  v  v+h aa   v  +  nPl  +++n++    +++a  
  MMETSP1137-20121227|5085_1 173 ALKGPALHLIEGDVCDGELLKLLLQEgrVTNVIHLAAQAGVRYSLTNPLAYVEANVKCFVTLLEAVK 239
                 23458899999*******9999998656999**************************9999998864 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (461 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       125  (0.0304729); expected 82.0 (0.02)
Passed bias filter:                      113  (0.0275475); expected 82.0 (0.02)
Passed Vit filter:                        20  (0.00487567); expected 4.1 (0.001)
Passed Fwd filter:                        10  (0.00243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.45u 0.17s 00:00:00.62 Elapsed: 00:00:00.51
# Mc/sec: 1193.08
//
Query:       MMETSP1137-20121227|5086_1  [L=161]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (161 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       159  (0.0387616); expected 82.0 (0.02)
Passed bias filter:                      117  (0.0285227); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.15s 00:00:00.32 Elapsed: 00:00:00.35
# Mc/sec: 607.15
//
Query:       MMETSP1137-20121227|5088_1  [L=244]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (244 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        67  (0.0163335); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.18s 00:00:00.40 Elapsed: 00:00:00.56
# Mc/sec: 575.10
//
Query:       MMETSP1137-20121227|5089_1  [L=346]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (346 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       145  (0.0353486); expected 82.0 (0.02)
Passed bias filter:                      106  (0.0258411); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.11s 00:00:00.39 Elapsed: 00:00:00.48
# Mc/sec: 951.42
//
Query:       MMETSP1137-20121227|5090_1  [L=256]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (256 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       146  (0.0355924); expected 82.0 (0.02)
Passed bias filter:                      107  (0.0260848); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.12s 00:00:00.36 Elapsed: 00:00:00.42
# Mc/sec: 804.50
//
Query:       MMETSP1137-20121227|5091_1  [L=1184]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1184 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       143  (0.034861); expected 82.0 (0.02)
Passed bias filter:                       40  (0.00975134); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.68u 0.16s 00:00:00.84 Elapsed: 00:00:00.94
# Mc/sec: 1662.50
//
Query:       MMETSP1137-20121227|5093_1  [L=140]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (140 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        49  (0.0119454); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.13s 00:00:00.28 Elapsed: 00:00:00.28
# Mc/sec: 637.19
//
Query:       MMETSP1137-20121227|5094_1  [L=283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.5e-83  274.6   0.1    1.2e-82  274.3   0.1    1.0  1  TIGR01020 rpsE_arch: ribosomal protein S5
    2.8e-24   83.5   0.5    4.6e-24   82.9   0.4    1.3  1  TIGR01021 rpsE_bact: ribosomal protein S5


Domain annotation for each model (and alignments):
>> TIGR01020  rpsE_arch: ribosomal protein S5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  274.3   0.1   5.7e-86   1.2e-82       4     211 ..      48     254 ..      45     255 .. 0.98

  Alignments for each domain:
  == domain 1    score: 274.3 bits;  conditional E-value: 5.7e-86
   TIGR01020   4 eleeWePktklGrlvkegkiksideifeeslpikeseivdvllpdlneeevldvslvqkmtksGrrtrfralvvvGnkdGyvGlGkgkakevatairkaiakaklniikvrrgcGsWecklgkehsvPfkveGksGsvrvrliPaPkGvGlvagdvakkvlrlaGiedvytktkGetkttvnfakatfealkkty.lvkaaekkeeklg 211
                 e++eW+P tklGrlvk+gk ks+++i+  slp+ke++i d++l d  ++ev++++ vqk+t +G+rtrf   v+vG++dG++GlG++ akev +ai + i  ak ++++vrr  G+W++k+g++h+vP+k +G++Gsvr+rl+Pa +G+G+va++ +k +l++aGi+d+yt ++G+tkt +nfaka+f+a++k y +++++ +ke+k+ 
  MMETSP1137-20121227|5094_1  48 EEKEWVPTTKLGRLVKDGKXKSLEQIYLFSLPVKEYQIADFFLKDKLKDEVMQIASVQKQTSAGQRTRFVCYVAVGDYDGHIGLGVKAAKEVPMAILGGIXAAKCSLVPVRR--GYWGAKIGSPHTVPIKLTGQCGSVRIRLVPAARGTGIVASPTSKLILQMAGIQDCYTASQGHTKTKGNFAKAAFNAVTKSYgFLTPDLWKETKFE 254
                 789****************************************765567***************************************************************..*******************************************************************************************9986 PP

>> TIGR01021  rpsE_bact: ribosomal protein S5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.9   0.4   2.2e-27   4.6e-24       2     139 ..      92     238 ..      91     242 .. 0.89

  Alignments for each domain:
  == domain 1    score: 82.9 bits;  conditional E-value: 2.2e-27
   TIGR01021   2 eeleervvkvnRvskvvkGGrklsfsalvvvGdkkGkvGfGvgkakevteaikkavekakknlikve.......lleg.tikhevigksgaakvllkpakeGtGviaGgavravlelaGvkdilakslGsnnp.invvratldalek 139
                 ++l++ v+++  v k +  G++ +f  +v vGd +G++G+Gv  akev+ ai  ++ +ak +l+ v        + +  t++ +++g+ g+ ++ l pa++GtG++a  + + +l++aG++d ++ s G +++  n ++a+++a++k
  MMETSP1137-20121227|5094_1  92 DKLKDEVMQIASVQKQTSAGQRTRFVCYVAVGDYDGHIGLGVKAAKEVPMAILGGIXAAKCSLVPVRrgywgakIGSPhTVPIKLTGQCGSVRIRLVPAARGTGIVASPTSKLILQMAGIQDCYTASQGHTKTkGNFAKAAFNAVTK 238
                 68999***********************************************************9963322221223257888889999****************************************97651699*******986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (283 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        63  (0.0153584); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.23u 0.17s 00:00:00.40 Elapsed: 00:00:01.04
# Mc/sec: 359.16
//
Query:       MMETSP1137-20121227|5095_1  [L=212]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (212 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       118  (0.0287665); expected 82.0 (0.02)
Passed bias filter:                       98  (0.0238908); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.17s 00:00:00.36 Elapsed: 00:00:00.38
# Mc/sec: 736.36
//
Query:       MMETSP1137-20121227|5096_1  [L=176]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (176 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        47  (0.0114578); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.18s 00:00:00.37 Elapsed: 00:00:00.54
# Mc/sec: 430.19
//
Query:       MMETSP1137-20121227|5097_1  [L=280]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.016   12.7   0.0      0.023   12.2   0.0    1.2  1  TIGR01496 DHPS: dihydropteroate synthase


Domain annotation for each model (and alignments):
>> TIGR01496  DHPS: dihydropteroate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   5.5e-06     0.023      65     176 ..      66     176 ..      55     182 .. 0.68

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 5.5e-06
   TIGR01496  65 pvikalreelsdvkiSvDtykaevaeaaleagvdiiNDvsglkdpemlevvaea...dvelvlmhskgtpetmqeevkyedvveevlrfleerveelleagvakekivlDpGigF 176
                 ++ + lre   d+++S D++ a+ a aa+ a +d +   + ++ ++   ++  +   + +l l hs+g+    + +   ++  e+ ++ ++erv++   a ++++++  D    F
  MMETSP1137-20121227|5097_1  66 DAGRVLREVSLDTWVSTDAFSATAAAAAVRAAADAMDEAKCGS-EAWNAIADGHscgNRALWLQHSRGHTGPDACAAVAREFPEQCAACVQERVSQ---AVLDQRQVNTDLSSPF 176
                 444668888889**************************99995.4444444444112456889999985555444444555555555555555554...4566666766666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (280 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        96  (0.0234032); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.23u 0.14s 00:00:00.37 Elapsed: 00:00:00.49
# Mc/sec: 754.22
//
Query:       MMETSP1137-20121227|5098_1  [L=231]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (231 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       101  (0.0246221); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.11s 00:00:00.31 Elapsed: 00:00:00.35
# Mc/sec: 871.13
//
Query:       MMETSP1137-20121227|5099_1  [L=66]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (66 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        27  (0.00658216); expected 82.0 (0.02)
Passed bias filter:                       26  (0.00633837); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.13s 00:00:00.25 Elapsed: 00:00:00.24
# Mc/sec: 362.97
//
Query:       MMETSP1137-20121227|5100_1  [L=477]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00083   16.4  15.1     0.0018   15.2   0.9    2.8  3  TIGR00946 2a69: auxin efflux carrier


Domain annotation for each model (and alignments):
>> TIGR00946  2a69: auxin efflux carrier
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.9   4.5e-07    0.0018       2      86 ..      11      97 ..      10     138 .. 0.85
   2 ?   -1.5   0.0     0.054   2.2e+02     184     202 ..     281     299 ..     207     302 .. 0.74
   3 !    5.4   4.3   0.00043       1.8     218     277 ..     334     393 ..     323     465 .. 0.81

  Alignments for each domain:
  == domain 1    score: 15.2 bits;  conditional E-value: 4.5e-07
   TIGR00946  2 itlkdletvltilvvllvayilakwwgiftedqasginrfVavfAlPllifhfissn...fiaadtlqklvvlavlilwaalsrsgsl 86
                i+l++++++l++ v+   +++la w+g + e++   i+   a+  +P l+f+ +++     ++ad+  +++++ v++ ++al+++ ++
  MMETSP1137-20121227|5100_1 11 IFLSSVQALLAASVPAFGGFLLA-WLGYMPESSTRVISSXSAKATIPCLLFVRVLEGvdlQLLADSWIMVLLPPVVVTVGALVGMAVV 97
                78899*****************9.*******************************998887888999999999999999999987654 PP

  == domain 2    score: -1.5 bits;  conditional E-value: 0.054
   TIGR00946 184 lrklirnPntyssLlglil 202
                 + + i  P++++ +lgl+ 
  MMETSP1137-20121227|5100_1 281 ICQRIFVPPVIGVVLGLVC 299
                 3344566666666666654 PP

  == domain 3    score: 5.4 bits;  conditional E-value: 0.00043
   TIGR00946 218 lksisiLsdaglgmalfslGlflalqpkkialgksvatlamavrflvgPavmavislaig 277
                 +  +  L++a++++ l+ lG+ l+  p    l   + + +++ +++v P++ a++ +++ 
  MMETSP1137-20121227|5100_1 334 SSGLRLLGNAAVPLNLMLLGISLSKGPSWESLPLPTTMAIVVAKMVVMPFLGAALIYVLD 393
                 455889**********************999998899999999********999998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (477 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       136  (0.0331546); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.16s 00:00:00.50 Elapsed: 00:00:00.79
# Mc/sec: 796.95
//
Query:       MMETSP1137-20121227|5101_1  [L=659]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (659 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.15s 00:00:00.55 Elapsed: 00:00:00.70
# Mc/sec: 1242.58
//
Query:       MMETSP1137-20121227|5102_1  [L=248]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        0.1    9.9   6.8      0.096   10.0   3.9    1.5  1  TIGR00331 hrcA: heat-inducible transcription repressor HrcA
        1.3    4.8  11.2        2.2    4.1   7.6    1.4  1  TIGR03683 A-tRNA_syn_arch: alanine--tRNA ligase
        2.2    4.7  13.6       0.51    6.8   1.4    2.0  2  TIGR02231 TIGR02231: conserved hypothetical protein


Domain annotation for each model (and alignments):
>> TIGR00331  hrcA: heat-inducible transcription repressor HrcA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   3.9     7e-05     0.096     204     283 ..      92     171 ..      47     194 .. 0.75

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 7e-05
   TIGR00331 204 kaeleeledelvdllleilseeneeelyvdGlsnlleqpefkedierirellelleskkllkklleealeekgvtvkigk 283
                 k+   +   e v+l l++++++++ +  ++G+ +++   + k ++ +i+++++ +e+++++  + ee +++ +   +  +
  MMETSP1137-20121227|5102_1  92 KMYKMKSHMEAVSLRLQTMQSSAQMAQCMKGVTKVMGRMNKKMNLPQISKIMQEFEKQNEMMGMKEEMMSDAMDDAFADD 171
                 3333344455677777888888888899**********************************999997655444444434 PP

>> TIGR03683  A-tRNA_syn_arch: alanine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   7.6    0.0016       2.2     734     870 ..       6     144 ..       4     180 .. 0.66

  Alignments for each domain:
  == domain 1    score: 4.1 bits;  conditional E-value: 0.0016
   TIGR03683 734 ageaaieaiqeledllkesaeilkvepeqlpetvkrffeewkeqrkeieklkeklaelkieeleseaekvgdvkvvvekvdadeeelkeiaeklaekekvvvlvsekegkvkvv.vssg.ekv..kvkagelvkeiakllg 870
                 a+ aa++a++++ d+l  ++++    +++ ++++k+ ++e+  +r  +e+ ++kl++ ++++  ++  +++++k++++++  +++ +k++ ++ ++ e+v    ++ ++++++  +++g +kv  +++ +  + +i+k+++
  MMETSP1137-20121227|5102_1   6 ASAAAAAAARNTMDALFGKQKTPAERIKEYNRQIKKSVRELDRERAALERQEKKLMTDIKKA--ARDGQMDSAKIMAKDLVRTRAYIKKMYKMKSHMEAVSLRLQTMQSSAQMAqCMKGvTKVmgRMNKKMNLPQISKIMQ 144
                 67788899999999999999999999999**********************99999988877..78889999999888887777777777666555555554444444333332122221223333333333334444443 PP

>> TIGR02231  TIGR02231: conserved hypothetical protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   1.4   0.00037      0.51     126     177 ..      16      67 ..       3      76 .. 0.84
   2 ?    3.3   2.8    0.0043       5.9      66     181 ..      86     206 ..      75     219 .. 0.72

  Alignments for each domain:
  == domain 1    score: 6.8 bits;  conditional E-value: 0.00037
   TIGR02231 126 kelkklldfaeseieklleedreveakirelekklselenelralltekeqr 177
                 + + +l+  +++  e+++e +r++++  rel++  ++le + ++l+t+ ++ 
  MMETSP1137-20121227|5102_1  16 NTMDALFGKQKTPAERIKEYNRQIKKSVRELDRERAALERQEKKLMTDIKKA 67 
                 4567789999999********************************9966554 PP

  == domain 2    score: 3.3 bits;  conditional E-value: 0.0043
   TIGR02231  66 seadseriaelrkkireleaeledledradalkklk...kfledirekltepikdlkreeadlkelkklldfaeseiekll....eedreveakirelekklselenelralltekeqrskkv 181
                 ++a  +++ +++++++++  +l+ +++ a++++  k   k++ ++++k+  p   +++ ++++++ ++++ ++e+ ++ ++    + d + +++ + l+  l+el +e    + + +q s+++
  MMETSP1137-20121227|5102_1  86 TRAYIKKMYKMKSHMEAVSLRLQTMQSSAQMAQCMKgvtKVMGRMNKKMNLPQ--ISKIMQEFEKQNEMMGMKEEMMSDAMddafADDEDEDEEENVLDGILAELGVETMNRMGDAPQTSVQA 206
                 56666788899999999999999999999999888844444444444444433..66889999999999988888777666222256778888888899999999988877777777776665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (248 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       510  (0.12433); expected 82.0 (0.02)
Passed bias filter:                      114  (0.0277913); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.31u 0.18s 00:00:00.49 Elapsed: 00:00:00.39
# Mc/sec: 839.32
//
Query:       MMETSP1137-20121227|5104_1  [L=107]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.8e-46  155.9   1.5    3.3e-46  155.6   1.0    1.0  1  TIGR01393 lepA: GTP-binding protein LepA


Domain annotation for each model (and alignments):
>> TIGR01393  lepA: GTP-binding protein LepA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  155.6   1.0   8.1e-50   3.3e-46     495     594 ..       4     103 ..       2     104 .. 0.98

  Alignments for each domain:
  == domain 1    score: 155.6 bits;  conditional E-value: 8.1e-50
   TIGR01393 495 lsvivhrdkaeekgrklveklkeliprqqfeiaiqaaigakiiaretikalrkdvlakcyGGditrkrkllekqkeGkkrlkeiGkvevPqeaflavlkv 594
                 l++ivhrd a++ g+ +++kl+eliprqqf+++iqaaig+ki+a++ i+++rkdvlakcyGGditrk+kll kq +Gkkr+k+iGkv+vPqeaf+avl+ 
  MMETSP1137-20121227|5104_1   4 LACIVHRDAAHSIGKGMTRKLRELIPRQQFKVPIQAAIGQKIVASSVISPMRKDVLAKCYGGDITRKKKLLSKQAKGKKRMKAIGKVNVPQEAFMAVLNL 103
                 89***********************************************************************************************975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (107 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       100  (0.0243784); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.14u 0.15s 00:00:00.29 Elapsed: 00:00:00.28
# Mc/sec: 486.99
//
Query:       MMETSP1137-20121227|5105_1  [L=183]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.5e-30  103.8  12.3    3.3e-30  103.4   8.5    1.2  1  TIGR00601 rad23: UV excision repair protein Rad23
  ------ inclusion threshold ------
       0.35    8.6  10.9       0.51    8.1   7.6    1.5  1  TIGR03499 FlhF: flagellar biosynthesis protein FlhF
        2.1    5.6  16.7        3.8    4.8  11.6    1.3  1  TIGR03593 yidC_nterm: membrane protein insertase, YidC/Oxa1 family, N-terminal domain


Domain annotation for each model (and alignments):
>> TIGR00601  rad23: UV excision repair protein Rad23
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  103.4   8.5   2.4e-33   3.3e-30     234     375 ..      10     182 ..       1     183 [] 0.80

  Alignments for each domain:
  == domain 1    score: 103.4 bits;  conditional E-value: 2.4e-33
   TIGR00601 234 e........teeaateaas.GedpleflrnqpqfqqlRqvvqqnPelLealLqqigkenPqLlqqisqhqEeFlqllnEpveelegesdlveg........................tGeiaeaglgqieqiqvtpeekeaieRLkalGFdrdlviqaylACdknEelAanyLle 375
                 +        t ++ t+a      ple +r +pq++ql ++ +qnP+lL++lL+++    P L + +++hq eF q+ln p+++ +++++ +++                        +G+ a+++++   q q+ p +k a+eRL++lGF ++   qaylACdknE lAan+L++
  MMETSP1137-20121227|5105_1  10 PtahaqavfTADSITQALApALTPLERMRREPQLLQLAEMARQNPSLLPPLLHELNTSSPHLIELLNAHQLEFQQFLNSPIQAPASQQQQQQQaqqqaqtqaqtqqqstveaapiqpAGQPAQQDVTV--QSQLSPGDKAAVERLQQLGFSEEAATQAYLACDKNETLAANFLFD 182
                 12234444544555555444889************************************************************666666665556677777888888887766666666666666533..88999**************************************96 PP

>> TIGR03499  FlhF: flagellar biosynthesis protein FlhF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   7.6   0.00037      0.51      82     166 ..      87     171 ..       3     180 .. 0.73

  Alignments for each domain:
  == domain 1    score: 8.1 bits;  conditional E-value: 0.00037
   TIGR03499  82 eekeekekeaeekaaeaaqeaekkleeaeeelrkelkalkellekqlselal.eeedperakllkklleagvseelarelleklke 166
                 +++ ++++++++++++a+q+a++++++ +++   e + ++ + +   + +++ ++ +p  + ++++l++ g+see a++ +  +++
  MMETSP1137-20121227|5105_1  87 NSPIQAPASQQQQQQQAQQQAQTQAQT-QQQSTVEAAPIQPAGQPAQQDVTVqSQLSPGDKAAVERLQQLGFSEEAATQAYLACDK 171
                 344444444444444444444444332.2334444455555444444444446999*********************999887777 PP

>> TIGR03593  yidC_nterm: membrane protein insertase, YidC/Oxa1 family, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8  11.6    0.0028       3.8      23      81 ..      87     140 ..      77     144 .. 0.52

  Alignments for each domain:
  == domain 1    score: 4.8 bits;  conditional E-value: 0.0028
   TIGR03593  23 kdpkpepqkppaaaqqaesqsaaaaaaasaaaaasadapsaaaaaaaaaaakritvktd 81 
                   p +   +p+ ++  +++q+a+++a+++a++++++++++a+ + a ++a++++tv+++
  MMETSP1137-20121227|5105_1  87 NSPIQ---APASQQ--QQQQQAQQQAQTQAQTQQQSTVEAAPIQPAGQPAQQDVTVQSQ 140
                 33222...222222..2222233345555555666666666666666666678888875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (183 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       418  (0.101902); expected 82.0 (0.02)
Passed bias filter:                      190  (0.0463189); expected 82.0 (0.02)
Passed Vit filter:                        20  (0.00487567); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.24u 0.19s 00:00:00.43 Elapsed: 00:00:00.38
# Mc/sec: 635.63
//
Query:       MMETSP1137-20121227|5106_1  [L=531]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.11   10.9   3.3        5.8    5.4   0.1    3.1  3  TIGR02419 C4_traR_proteo: phage/conjugal plasmid C-4 type zinc finger protein, TraR family


Domain annotation for each model (and alignments):
>> TIGR02419  C4_traR_proteo: phage/conjugal plasmid C-4 type zinc finger protein, TraR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.1      0.77   3.1e+03      35      40 ..      75      80 ..      69      81 .. 0.66
   2 ?    5.4   0.1    0.0014       5.8      48      59 ..     244     255 ..     231     259 .. 0.88
   3 ?    5.1   0.0    0.0018       7.2      49      59 ..     340     350 ..     320     354 .. 0.89

  Alignments for each domain:
  == domain 1    score: -3.3 bits;  conditional E-value: 0.77
   TIGR02419 35 CeeCge 40
                C+eC++
  MMETSP1137-20121227|5106_1 75 CAECNN 80
                777754 PP

  == domain 2    score: 5.4 bits;  conditional E-value: 0.0014
   TIGR02419  48 ealPgvtrCveC 59 
                  +lP v++CveC
  MMETSP1137-20121227|5106_1 244 YILPAVHTCVEC 255
                 579********* PP

  == domain 3    score: 5.1 bits;  conditional E-value: 0.0018
   TIGR02419  49 alPgvtrCveC 59 
                 +lP v++CveC
  MMETSP1137-20121227|5106_1 340 ILPAVHTCVEC 350
                 78999999999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (531 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       228  (0.0555826); expected 82.0 (0.02)
Passed bias filter:                      103  (0.0251097); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.15s 00:00:00.52 Elapsed: 00:00:00.72
# Mc/sec: 973.42
//
Query:       MMETSP1137-20121227|5107_1  [L=2006]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.11    8.8   0.5       0.22    7.7   0.4    1.4  1  TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC


Domain annotation for each model (and alignments):
>> TIGR01494  ATPase_P-type: HAD ATPase, P-type, family IC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   0.4   5.4e-05      0.22     145     202 ..    1784    1841 ..    1771    1848 .. 0.91

  Alignments for each domain:
  == domain 1    score: 7.7 bits;  conditional E-value: 5.4e-05
   TIGR01494  145 llallvfllvlielktflkiilralillviaiPiaLpvavtialavgdkrlailvrsl 202 
                  l+a+ ++++++++++++   +lr+lil+v ++P  L +a+ +  a++ ++l ++ +++
  MMETSP1137-20121227|5107_1 1784 LMAIPLLVITYKSMQQYGWDVLRMLILAVPIVPFLLVLALNTLSALSRAALRCVSTEA 1841
                  6778888999999999999*****************************9999998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (2006 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       141  (0.0343735); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.11u 0.16s 00:00:01.27 Elapsed: 00:00:00.93
# Mc/sec: 2846.99
//
Query:       MMETSP1137-20121227|5108_1  [L=478]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (478 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       103  (0.0251097); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.11s 00:00:00.43 Elapsed: 00:00:00.43
# Mc/sec: 1467.23
//
Query:       MMETSP1137-20121227|5109_1  [L=127]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (127 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        68  (0.0165773); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.15s 00:00:00.31 Elapsed: 00:00:00.35
# Mc/sec: 478.93
//
Query:       MMETSP1137-20121227|5110_1  [L=206]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (206 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        68  (0.0165773); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.10s 00:00:00.29 Elapsed: 00:00:00.62
# Mc/sec: 438.54
//
Query:       MMETSP1137-20121227|5111_1  [L=244]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (244 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        89  (0.0216967); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.15s 00:00:00.36 Elapsed: 00:00:00.37
# Mc/sec: 870.41
//
Query:       MMETSP1137-20121227|5112_1  [L=125]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (125 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        81  (0.0197465); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.15s 00:00:00.30 Elapsed: 00:00:00.28
# Mc/sec: 589.24
//
Query:       MMETSP1137-20121227|5113_1  [L=567]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0011   14.6  69.1      0.016   10.7  27.1    2.2  2  TIGR02169 SMC_prok_A: chromosome segregation protein SMC
     0.0048   12.5  69.9     0.0042   12.7  33.8    2.2  2  TIGR02168 SMC_prok_B: chromosome segregation protein SMC
  ------ inclusion threshold ------
        0.1   10.0   3.2      0.064   10.6   0.5    1.9  2  TIGR02832 spo_yunB: sporulation protein YunB


Domain annotation for each model (and alignments):
>> TIGR02169  SMC_prok_A: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.7  27.1   1.2e-05     0.016     669     915 ..      58     307 ..      45     319 .. 0.74
   2 !    9.6  15.6   2.5e-05     0.034     763     918 ..     319     484 ..     306     544 .. 0.74

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 1.2e-05
   TIGR02169 669 vsasekeklerlrerleeLereleslqselrriekrldel.ssklsdaekkieeiekeleqleeeeeklkerleeleeklseleeeleekkeelkeleaeieeleeklaklkealedleaels..eekieeieeelekleeevsriearleeieaelnklelekelleeeiqelqeeieeleeqkkeiekeieelkakleeleeelee.leaavreLeeelkdLkkereeleaelrelekkkeeleaeiek 915
                  s  + e+l+ l++r ++Le+e  +++++ + + + +++  ++++++++++  ++ + +   ++e +kl e++++l++k +el ++  ek++el++l+ ++++l ++++   ++ + + +e++  ee++++   ++e+  e+++  e++++ + +e    e + e  e + + ++ + eel    ++ ++  e  k++l+++e+ + e  + +++eL e+++ L  + +e++ael++ ek+++e+ a++++
  MMETSP1137-20121227|5113_1  58 SSGDQDEELADLQRRFNALEDETRAAMERNTMVTSSISATpRASMDRMQRERTAAAAVRADNDAELSKLDEQITALRRKHDELVHANMEKRQELDKLQDKLQDLAREAKLPSADENPVIREINalEERLQRAVVKYEDAFEVRRTYEQIVKRLKEERIGFENKLEARELALKSKETDYEELLLMSHDANQSKELAKQELAKFEAIVSEeRKLREKELAERRA-LVTKKQEVNAELERREKARREAMAAAQH 307
                 455678899999999999999999999999999998887636678888888888888888889999999999999999999999999999999999999999998887777776666655543226778888888888888888888888887776666666777777777777777788877888888888888888888887765414556677766654.5555677777777777777777766665 PP

  == domain 2    score: 9.6 bits;  conditional E-value: 2.5e-05
   TIGR02169 763 eleaeieeleeklaklkealedleaelseekieeieeelekleeevsriearleeieaelnklelekelleeeiqelqeeieeleeqk...keiekeieelkakleeleeeleeleaavreLeeelkdLkke....r...eeleaelrelekkkeeleaeiekkrk 918
                   ea+iee +ek+a +++a  ++++      ++e+ ++   +ee+++++ a+++e + ++++l   ke ++ e+q l+ +    ++q    ++ ek+ e++k k e l++ l   +a ++ L e+l++++ e    +   +++ + l++ ekk + + a+i ++++
  MMETSP1137-20121227|5113_1 319 ITEADIEEEQEKIASYEAAFREIKEATGVADVNEVIQKFITQEETHKNLLAMTKESQGKIEQLAEAKEAAQREVQRLKYDASSSKQQLgpvEQGEKKYEKQKHKYERLAKVLVSVKAGIQHLAERLEGVAIEdtpvVlndDNMIEVLQQCEKKLRIVMAAIREEEE 484
                 36899********************************************************************************9972225566788888899999999999*************9998762222211133444444444444444444433333 PP

>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.7  33.8   3.1e-06    0.0042     236     532 ..      61     359 ..      55     362 .. 0.83
   2 ?    0.8  21.6     0.011        16     233     907 ..     283     481 ..     270     500 .. 0.25

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 3.1e-06
   TIGR02168 236 elkeeleeleeelkeaeeeleeleaelkeleeeleel.rlekseleeeleelqkelqelkaeisrleqeieilkerleqlekeleeleeqleeleskkeeleeelaeleeeleelkeelesleaeleeaeaeleelesrleeleeeleelrsevaeleeqlaslnaelerleaeleqleerrerlkqeieelekkleeaeaelkelqeeleeleeeleeleeelerleealeeleeeleeaeqalqkaeeelaqlqarles..leslqenleglsegvkallknksklagilgvlselie 532
                 +++eel+ l++ ++++e+e +++ ++ ++++++++ + r+ + ++++e +++ +   +  ae+s+l+++i  l+++ ++l + + e  ++l++l+ k+++l++e++  +++ + +  e+++le++l++a  ++e++ +  +++e+ +++l++e    e++l++ +  l++ e++ e+l  + + ++q++e ++++l ++ea ++e ++  e++ +e   l +++++++++le+ e++ +ea  a q+   + +++q+ ++   +e+ qe+  +++ + +++ k++ ++a++ +v++++i+
  MMETSP1137-20121227|5113_1  61 DQDEELADLQRRFNALEDETRAAMERNTMVTSSISATpRASMDRMQRERTAAAAVRADNDAELSKLDEQITALRRKHDELVHANMEKRQELDKLQDKLQDLAREAKLPSADENPVIREINALEERLQRAVVKYEDAFEVRRTYEQIVKRLKEERIGFENKLEARELALKSKETDYEELLLMSHDANQSKELAKQELAKFEAIVSEERKLREKELAERRALVTKKQEVNAELERREKARREAMAAAQHGDLNSSSMQNSITEadIEEEQEKIASYEAAFREI-KEATGVADVNEVIQKFIT 359
                 5789999************999999999999999877256677777777777777788999*********************************************************************************************************************9999999999999999999999999998888888888888899999999999999888888888777766666665555554311566666666665444444.444456777777776665 PP

  == domain 2    score: 0.8 bits;  conditional E-value: 0.011
   TIGR02168 233 rleelkeeleeleeelkeaeeeleeleaelkeleeeleelrlekseleeeleelqkelqelkaeisrleqeieilkerleqlekeleeleeqleeleskkeeleeelaeleeeleelkeelesleaeleeaeaeleelesrleeleeeleelrsevaeleeqlaslnaelerleaeleqleerrerlkqeieelekkleeaeaelkelqeeleeleeeleeleeelerleealeeleeeleeaeqalqkaeeelaqlqarlesleslqenleglsegvkallknksklagilgvlselieveekyeaAieaalgerlqavvveneeaakkaiealkknelGrvtflpldvikgaeieaseaevlkseegvlgvakdlvkvdeklekalealLggvlvvddldsAlelakklraeerivtldGelvrrggvitggsektessilerkkeieeleeeieeleekiaelekelkelekeleeleeeleklrkeleelerklselkkelerlekeveqleerlaqlekeleeleeereeleeeleeaeeelkeaeeeieeleaeieqlkeelkalrealseleaeltelkeeaaekeerleslekeiaalekeleeleeqieeleeeiesleaeieeleeeleeleeeleellkekasleealaelreeleelseelre 907
                 +                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     +e++ ele+ e++++++ +++++   +l++ +++ +  e+ +e+ +e++a+ e++  e++e    +  +++e  +++ ++ee+ ++l a  ++ + ++++l ea +++++e+++lk +a++ +++l      +++ ek+ e+ + + e+l++ + s++a i++l e+le    e + +  + +++ e l++ +++l+ +++ +re
  MMETSP1137-20121227|5113_1 283 K------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------KQEVNAELERREKARREAMAAAQH--GDLNSSSMQNSITEADIEEEQEKIASYEAAFREIKEATGVA--DVNEVIQKFITQEETHKNLLAMTKESQGKIEQLAEAKEAAQREVQRLKYDASSSKQQLG----PVEQGEKKYEKQKHKYERLAKVLVSVKAGIQHLAERLEGVAIEDTPVVLNDDNMIEVLQQCEKKLRIVMAAIRE 481
                 1....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................111111111111111111111111..12222222222222222222222222222222222221111..12222222233333333333333333333333333333333333333333332222211....11122222222222222222222222222222222222222211111111122222222223332333222222 PP

>> TIGR02832  spo_yunB: sporulation protein YunB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0      0.53   7.2e+02      58     103 ..     230     275 ..     226     283 .. 0.81
   2 ?   10.6   0.5   4.7e-05     0.064      40      80 ..     340     381 ..     317     405 .. 0.83

  Alignments for each domain:
  == domain 1    score: -2.6 bits;  conditional E-value: 0.53
   TIGR02832  58 ekefdvkdlveiekdenGkitliklntlklnklaskitkevqekln 103
                 +ke d+++l+ +++d n    l k +  k++ ++s+  k  +++l 
  MMETSP1137-20121227|5113_1 230 SKETDYEELLLMSHDANQSKELAKQELAKFEAIVSEERKLREKELA 275
                 5788999999999999999999999999999999887777777775 PP

  == domain 2    score: 10.6 bits;  conditional E-value: 4.7e-05
   TIGR02832  40 eik.riatevinkavedevekefdvkdlveiekdenGkitli 80 
                 eik ++ ++ +n+++++ + +e   k+l+ + k+ +Gki  +
  MMETSP1137-20121227|5113_1 340 EIKeATGVADVNEVIQKFITQEETHKNLLAMTKESQGKIEQL 381
                 4441467899*****************************765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (567 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       530  (0.129205); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.78u 0.19s 00:00:00.97 Elapsed: 00:00:01.46
# Mc/sec: 512.59
//
Query:       MMETSP1137-20121227|5114_1  [L=329]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.4e-05   21.2   0.0    2.4e-05   21.2   0.0    1.5  2  TIGR01302 IMP_dehydrog: inosine-5'-monophosphate dehydrogenase
    2.5e-05   20.9   0.0     0.0011   15.5   0.0    2.7  3  TIGR01137 cysta_beta: cystathionine beta-synthase
    0.00034   18.1   0.1     0.0009   16.7   0.0    1.8  2  TIGR00393 kpsF: sugar isomerase, KpsF/GutQ family


Domain annotation for each model (and alignments):
>> TIGR01302  IMP_dehydrog: inosine-5'-monophosphate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.0   1.8e-08   2.4e-05      90     208 ..       6     126 ..       2     189 .. 0.69
   2 ?   -3.8   0.5      0.66   9.1e+02     299     328 ..     244     273 ..     242     285 .. 0.71

  Alignments for each domain:
  == domain 1    score: 21.2 bits;  conditional E-value: 1.8e-08
   TIGR01302  90 pvtvsPettvedvlelkekkgisgvpvvedgkeegklvGivtkkdlrfvkdkskk.....vsevmtkeevitvke..eidleeaeevleekkieklpvvdkegelvglvtvkdiekakefpkaskd 208
                 + t+ Pe++++++ ++++++g+ +++v  +   +g + Gi+t++d+    d + +     ++++mt+ e+ ++++  + ++    e ++     ++p++d     +++++++d+ k+   ++a+  
  MMETSP1137-20121227|5114_1   6 VATLRPEEPIAHAIAVMSERGVGSILVAAH---SGAIQGILTERDVLEKLDFNASlhsvsIESLMTR-EMAMQRAqpDSSMGFCLEKMQVGGFRHIPIMDGTVA-LAMLSMRDVGKVLCLEHAAVA 126
                 67999**********************999...578*********9876666555222236777773.333333300344445556666666678899887665.578999999998877777543 PP

  == domain 2    score: -3.8 bits;  conditional E-value: 0.66
   TIGR01302 299 iCttrevaavGvpqitAvakvaeaaaksgi 328
                  C t     vGv+  tA  ++ + + + g+
  MMETSP1137-20121227|5114_1 244 ACATPSSSVVGVTPNTAAISCLQKMVDDGV 273
                 577888888888888877777777766665 PP

>> TIGR01137  cysta_beta: cystathionine beta-synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   8.1e-07    0.0011     347     416 ..       5      74 ..       1      94 [. 0.87
   2 ?   -0.8   0.0     0.074     1e+02     335     367 ..     160     192 ..     144     218 .. 0.79
   3 ?    1.9   0.0     0.011        15     346     379 ..     250     283 ..     240     313 .. 0.78

  Alignments for each domain:
  == domain 1    score: 15.5 bits;  conditional E-value: 8.1e-07
   TIGR01137 347 alvtvketetvadaieilrekGfdqlPvvkeagkvlgsvtlrellsallakkakledavkkklskklkki 416
                 ++ t++++e +a+ai ++ e+G+  + v  ++g + g  t+r++l++l  + + ++ +++  +++++ + 
  MMETSP1137-20121227|5114_1   5 PVATLRPEEPIAHAIAVMSERGVGSILVAAHSGAIQGILTERDVLEKLDFNASLHSVSIESLMTREMAMQ 74 
                 6778999********************************************9999999999998776554 PP

  == domain 2    score: -0.8 bits;  conditional E-value: 0.074
   TIGR01137 335 fgnarvkdlalkalvtvketetvadaieilrek 367
                  ++++v +la+++ ++v    tva+a+  +re 
  MMETSP1137-20121227|5114_1 160 ATRVHVGQLAMPSCIEVPRASTVAEAVVRMREW 192
                 456889999****************99888875 PP

  == domain 3    score: 1.9 bits;  conditional E-value: 0.011
   TIGR01137 346 kalvtvketetvadaieilrekGfdqlPvvkeag 379
                 +++v v++++   + ++ + + G+ qlPv+   +
  MMETSP1137-20121227|5114_1 250 SSVVGVTPNTAAISCLQKMVDDGVRQLPVIAPVA 283
                 56888999999999999999*********98433 PP

>> TIGR00393  kpsF: sugar isomerase, KpsF/GutQ family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0   6.6e-07    0.0009     169     233 ..       9      74 ..       2     110 .. 0.78
   2 ?   -2.1   0.0      0.35   4.8e+02     178     239 ..     105     169 ..      88     187 .. 0.67

  Alignments for each domain:
  == domain 1    score: 16.7 bits;  conditional E-value: 6.6e-07
   TIGR00393 169 vaktaslkdallelsekrlGlavvvdeneqlkGvltdGdlrr.allgggalkkevkdvmtlggktl 233
                 +++   +  a+ ++se+++G+++v  ++  ++G+lt+ d+   ++ +++    +++ +mt +    
  MMETSP1137-20121227|5114_1   9 LRPEEPIAHAIAVMSERGVGSILVAAHSGAIQGILTERDVLEkLDFNASLHSVSIESLMTREMAMQ 74 
                 5666678899*****************************97759999999999******9875433 PP

  == domain 2    score: -2.1 bits;  conditional E-value: 0.35
   TIGR00393 178 allelsekrlGlavvvdeneqlkGvltdGdlrr...allgggalkkevkdvmtlggktlksdall 239
                 al  ls +++G ++ ++++   +G     d +    ++  + a   ++ d+ ++ +++++ ++l+
  MMETSP1137-20121227|5114_1 105 ALAMLSMRDVGKVLCLEHAAVAHGSHGAADCQPaeeTAALAAATAVTASDLSASRATRVHVGQLA 169
                 55666667777777777777777776666666532333444455556666666667776666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (329 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       145  (0.0353486); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.30u 0.16s 00:00:00.46 Elapsed: 00:00:00.70
# Mc/sec: 620.35
//
Query:       MMETSP1137-20121227|5115_1  [L=156]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      8e-14   49.0   1.5    9.5e-14   48.7   1.0    1.0  1  TIGR00990 3a0801s09: mitochondrial precursor proteins import receptor
    7.3e-07   25.2   6.0    1.9e-06   23.8   4.2    1.6  1  TIGR02917 PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein
  ------ inclusion threshold ------
      0.017   13.2   0.0       0.02   13.0   0.0    1.1  1  TIGR02689 ars_reduc_gluta: arsenate reductase, glutathione/glutaredoxin type
      0.025   12.1   3.4        0.1   10.1   0.6    2.1  2  TIGR02552 LcrH_SycD: type III secretion low calcium response chaperone LcrH/SycD


Domain annotation for each model (and alignments):
>> TIGR00990  3a0801s09: mitochondrial precursor proteins import receptor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.7   1.0   9.2e-17   9.5e-14     110     225 ..      15     137 ..       2     146 .. 0.79

  Alignments for each domain:
  == domain 1    score: 48.7 bits;  conditional E-value: 9.2e-17
   TIGR00990 110 idessvvnlseeer..kkyaaklkekGnkayrnkdfdkaielyskalllk....ed.Pvyysnraacynaladlekvvedttaaleldpdyvkalnrranaydqlgkyadalldltasslidd 225
                 +d +++   s + +   + aa lk +Gn+  r    d+a+++y++a+ +k    ed     +nra     l  ++  ++   aal+l+p yvkal rra+a +  ++ ++a+ d+  +  id 
  MMETSP1137-20121227|5115_1  15 PDATTQESCSPDAKtpAATAAYLKVTGNEKLRAGSLDEALQFYDQAVACKdlndEDrAAVQCNRALALLRLQRYDDCIAACGAALALQPRYVKALYRRAQAREANAQLSEAFRDVHDVLRIDA 137
                 4444444555444411567899***************************955433435689***************************************************99975544444 PP

>> TIGR02917  PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.8   4.2   1.9e-09   1.9e-06     111     230 ..      20     143 ..       7     147 .. 0.70

  Alignments for each domain:
  == domain 1    score: 23.8 bits;  conditional E-value: 1.9e-09
   TIGR02917 111 delekksslddeeaaellalrglAaLglgeleeAqksleqAla....iapksleaklglAqlalaenkldearalvdevLtadpknvdAllLkgdlllssgnieeAlaayrkaielkpnaiaal 230
                 +e+   +++  +  a++l + g+ +L+ g l+eA +++ qA a     +++++ ++   A  +l  +++d+  a+  ++L+ +p  v+Al  +++   ++ +  eA  + +++++++ ++++a+
  MMETSP1137-20121227|5115_1  20 QESCSPDAKTPAATAAYLKVTGNEKLRAGSLDEALQFYDQAVAckdlNDEDRAAVQCNRALALLRLQRYDDCIAACGAALALQPRYVKALYRRAQAREANAQLSEAFRDVHDVLRIDARNKEAQ 143
                 5555566666667777888888888888888888888888876222234566777777777777778888888888888888888888888888888888888888888888888887777665 PP

>> TIGR02689  ars_reduc_gluta: arsenate reductase, glutathione/glutaredoxin type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   1.9e-05      0.02      39     119 ..      54     134 ..      22     141 .. 0.75

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 1.9e-05
   TIGR02689  39 srvdptaievmeevgidi.sgqiskplenfnaedydvvislcgcgvnlpeawvtreifedwqledpdgqsvevfrrvrdeik 119
                  +    a++  +    d  + q  + l  ++ + yd  i+ cg  + l + +v + ++   q  + + q  e+fr v d ++
  MMETSP1137-20121227|5115_1  54 LQFYDQAVACKDLNDEDRaAVQCNRALALLRLQRYDDCIAACGAALALQPRYV-KALYRRAQAREANAQLSEAFRDVHDVLR 134
                 455555555555555554145888889999999*****************998.689********************99764 PP

>> TIGR02552  LcrH_SycD: type III secretion low calcium response chaperone LcrH/SycD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.0     0.028        29      64      83 ..      46      65 ..      31      78 .. 0.75
   2 ?   10.1   0.6    0.0001       0.1      59     122 ..      79     142 ..      76     146 .. 0.93

  Alignments for each domain:
  == domain 1    score: 2.2 bits;  conditional E-value: 0.028
   TIGR02552 64 alkeyeeAiaaYalaaaldl 83
                +++  +eA+++Y+ a+a++ 
  MMETSP1137-20121227|5115_1 46 RAGSLDEALQFYDQAVACKD 65
                56788999999999998873 PP

  == domain 2    score: 10.1 bits;  conditional E-value: 0.0001
   TIGR02552  59 aaclqalkeyeeAiaaYalaaaldlddprpvyhaaecllalgekeeAlkaLklaieiaeekeey 122
                 a++l +l++y++ iaa ++a+al++   +++y++a+   a  +  eA ++   +++i++ ++e 
  MMETSP1137-20121227|5115_1  79 ALALLRLQRYDDCIAACGAALALQPRYVKALYRRAQAREANAQLSEAFRDVHDVLRIDARNKEA 142
                 677889***************************************************9988865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (156 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       138  (0.0336421); expected 82.0 (0.02)
Passed bias filter:                      104  (0.0253535); expected 82.0 (0.02)
Passed Vit filter:                        18  (0.0043881); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.21u 0.17s 00:00:00.38 Elapsed: 00:00:00.84
# Mc/sec: 245.12
//
Query:       MMETSP1137-20121227|5116_1  [L=287]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.5e-19   67.3   0.0    1.9e-19   66.9   0.0    1.0  1  TIGR03903 TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
    3.2e-05   21.3   0.0    4.5e-05   20.8   0.0    1.2  1  TIGR03724 arch_bud32: Kae1-associated kinase Bud32


Domain annotation for each model (and alignments):
>> TIGR03903  TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.9   0.0     9e-23   1.9e-19      23     191 ..      51     219 ..      36     235 .. 0.84

  Alignments for each domain:
  == domain 1    score: 66.9 bits;  conditional E-value: 9e-23
   TIGR03903  23 aRFrReialCarLshPnivaLlDsGeaedgllFavFeyveGrtlrevLaadGaLpaaet....grLmlqvLDalaaahdaGvvhRDLkPqnimvsaa....dveshakvLDFGigaLlpgvedadeatltrttevlGsPaYaaPeqLRgepvtaksDlYaWGLivleCLtGkrvvqG 191
                 +  + e+ + a LshP i+    s +a +  l  v e+ +   l+e +  + aL+        +r   q   ala+ h+  v+hRDLk  n+++  +    d+e   k+ DFGi+  ++           +++ v G+P Y +Pe +Rgep    +D +a G++++e L  +r  +G
  MMETSP1137-20121227|5116_1  51 RAVQNEVRILASLSHPSIISYHGSYRAAE-ALAIVMEFADRGNLAEAISMQAALAQPFAtplvVRWAGQLARALAHLHSMKVLHRDLKSANVLLCSTprgaDDELDVKLADFGISRAMSTNTR-------LAETVCGTPFYMSPELIRGEPYAEPADAWALGVVLFELLALRRPFDG 219
                 45689*******************99999.8999********************8654402225666799***********************98743333888999*******975553333.......455589*******************************9987666655 PP

>> TIGR03724  arch_bud32: Kae1-associated kinase Bud32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   0.0   2.2e-08   4.5e-05      45     142 ..      54     170 ..      43     178 .. 0.81

  Alignments for each domain:
  == domain 1    score: 20.8 bits;  conditional E-value: 2.2e-08
   TIGR03724  45 rkEarllseakkagvntPvvydvdpeekkivmeyiegkklkdlleekel...........ellkevGelvgklHkagivhgDlttsNiivk........ddklyliDfGLgkkskev 142
                 ++E+r+l+++ + ++ + +      e+  ivme  +  +l ++++ +             + + ++++++++lH+ +++h Dl  +N+++         + ++ l DfG+++  ++ 
  MMETSP1137-20121227|5116_1  54 QNEVRILASLSHPSIISYHGSYRAAEALAIVMEFADRGNLAEAISMQAAlaqpfatplvvRWAGQLARALAHLHSMKVLHRDLKSANVLLCstprgaddELDVKLADFGISRAMSTN 170
                 6788888888888777777777777889999999999999999999777889999998888899999**********************9546777655557899999999876655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (287 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        75  (0.0182838); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.25u 0.12s 00:00:00.37 Elapsed: 00:00:00.49
# Mc/sec: 773.08
//
Query:       MMETSP1137-20121227|5117_1  [L=223]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (223 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       123  (0.0299854); expected 82.0 (0.02)
Passed bias filter:                      107  (0.0260848); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.18s 00:00:00.41 Elapsed: 00:00:00.44
# Mc/sec: 668.94
//
Query:       MMETSP1137-20121227|5118_1  [L=446]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (446 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       281  (0.0685032); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.14s 00:00:00.47 Elapsed: 00:00:00.49
# Mc/sec: 1201.37
//
Query:       MMETSP1137-20121227|5119_1  [L=162]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (162 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        61  (0.0148708); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.16s 00:00:00.35 Elapsed: 00:00:00.47
# Mc/sec: 454.94
//
Query:       MMETSP1137-20121227|5120_1  [L=304]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (304 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       139  (0.0338859); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.13s 00:00:00.40 Elapsed: 00:00:00.36
# Mc/sec: 1114.57
//
Query:       MMETSP1137-20121227|5121_1  [L=327]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (327 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       211  (0.0514383); expected 82.0 (0.02)
Passed bias filter:                      120  (0.029254); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.17s 00:00:00.45 Elapsed: 00:00:00.44
# Mc/sec: 980.92
//
Query:       MMETSP1137-20121227|5122_1  [L=154]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (154 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       154  (0.0375427); expected 82.0 (0.02)
Passed bias filter:                      132  (0.0321794); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.17s 00:00:00.34 Elapsed: 00:00:00.34
# Mc/sec: 597.83
//
Query:       MMETSP1137-20121227|5123_1  [L=443]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.5e-09   35.6   0.0    0.00093   17.5   0.0    2.3  2  TIGR01444 fkbM_fam: methyltransferase, FkbM family


Domain annotation for each model (and alignments):
>> TIGR01444  fkbM_fam: methyltransferase, FkbM family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0   7.6e-07    0.0031       2     103 ..      91     195 ..      90     203 .. 0.90
   2 !   17.5   0.0   2.3e-07   0.00093     102     141 ..     224     263 ..     220     265 .. 0.73

  Alignments for each domain:
  == domain 1    score: 15.8 bits;  conditional E-value: 7.6e-07
   TIGR01444   2 viDiGAniGdvslvfaravaegrviafEPlpdllekleenvklnnlkn...vkllnaAvgdregeleftvsddatgnsslaadselaeeseieVevvtlddlvee 103
                 ++ +GAn+G   l f+++++  +    E +  l + l+++v+ ++++    + ++ aAv++++ ++  + s +++g  s+aa   ++ + +i+ ++v++dd+++ 
  MMETSP1137-20121227|5123_1  91 MLNVGANKGYNLLEFLQRYTSTSLTHSEWHRLLSTLLRQMVEMTKAQTevpIAIHDAAVSNESSLVYTQDSALRPGYESVAAARTQSARHSIARRTVSMDDFLSG 195
                 689**************************************9999988899*****************************9999656666788899999998865 PP

  == domain 2    score: 17.5 bits;  conditional E-value: 2.3e-07
   TIGR01444 102 eeaglekvdllKiDvEGaEleVLrglaetlee.kvpaivle 141
                 ++ag  +v+l+ iD+EG++  VLrg+a++l + +v+++ +e
  MMETSP1137-20121227|5123_1 224 KRAG-GRVQLVSIDTEGWDGLVLRGMAAALAShRVDVVEFE 263
                 5555.58*******************555555055555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (443 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        71  (0.0173086); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.28u 0.13s 00:00:00.41 Elapsed: 00:00:00.42
# Mc/sec: 1392.17
//
Query:       MMETSP1137-20121227|5126_1  [L=266]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (266 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        83  (0.020234); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.17s 00:00:00.41 Elapsed: 00:00:00.61
# Mc/sec: 575.56
//
Query:       MMETSP1137-20121227|5126_2  [L=469]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (469 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        66  (0.0160897); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.16s 00:00:00.48 Elapsed: 00:00:00.39
# Mc/sec: 1587.25
//
Query:       MMETSP1137-20121227|5127_1  [L=406]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (406 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       103  (0.0251097); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.16s 00:00:00.46 Elapsed: 00:00:00.60
# Mc/sec: 893.13
//
Query:       MMETSP1137-20121227|5128_1  [L=696]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   4.4e-207  687.4   5.8   5.1e-207  687.1   4.0    1.0  1  TIGR02031 BchD-ChlD: magnesium chelatase ATPase subunit D
   4.6e-194  644.3   0.9   5.7e-194  644.0   0.6    1.1  1  TIGR02442 Cob-chelat-sub: cobaltochelatase subunit
    1.1e-80  269.2   0.3    1.8e-80  268.5   0.2    1.3  1  TIGR02030 BchI-ChlI: magnesium chelatase ATPase subunit I
    3.6e-08   30.2   0.0      6e-05   19.6   0.0    2.2  2  TIGR00368 TIGR00368: Mg chelatase-like protein
    3.5e-06   23.7   0.0     0.0035   13.8   0.0    2.3  2  TIGR00764 lon_rel: putative ATP-dependent protease
    1.3e-05   21.6   0.1    2.2e-05   20.9   0.0    1.2  1  TIGR03788 marine_srt_targ: marine proteobacterial sortase target protein
     0.0004   17.8   0.0    0.00071   17.0   0.0    1.4  1  TIGR03436 acidobact_VWFA: VWFA-related Acidobacterial domain
     0.0015   15.2   0.0       0.13    8.8   0.0    2.7  3  TIGR01818 ntrC: nitrogen regulation protein NR(I)
     0.0029   14.0   0.1      0.031   10.6   0.0    2.3  3  TIGR02903 spore_lon_C: ATP-dependent protease, Lon family
  ------ inclusion threshold ------
      0.011   12.5   0.1        1.1    5.8   0.0    2.2  2  TIGR02915 PEP_resp_reg: PEP-CTERM-box response regulator transcription factor


Domain annotation for each model (and alignments):
>> TIGR02031  BchD-ChlD: magnesium chelatase ATPase subunit D
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  687.1   4.0  1.2e-209  5.1e-207       1     606 [.      29     681 ..      29     683 .. 0.92

  Alignments for each domain:
  == domain 1    score: 687.1 bits;  conditional E-value: 1.2e-209
   TIGR02031   1 ervklAllllavDpelgGvairaraGtaktalaralaeiLpeieelegs..................................kaplvelplgvtedrLlGgiDveeslasgkrvlqkgllaeanrgvlyvdelnlldeslvnrlldaldegvvivereGisvrePakfvLiatydpeegeealrehllDRlalivsle.evaslearveivrl.....elaeeveeevndelelakaqiekaRellkqVtiseeqvkelvleavklGveghRadlfavraAkalaAlegReeVeeeDlklAvelvllpRatrleekepeqee.ppppPpPpepe...segeeeedeeeeeeeekeee..qlpeelildAveallpeeiLellqkaqagrkkkgksGakgeqisneRGRyirsllgkkesgkrvavvatLraAaPyqklRreekakk......k.erkviveasDlriKrfkrksgalliFvVDASGsaavaRlseAKGAvelLLqeaYvsRDqValiaFRGeaaevLlpPsrSvelakrrldalPtGGgtPLAaalaaavevakqarksg.vlritivliTDGRaNvaldasad.Pesakadreelkeevlalarkire.agisalviDTankfvstGeakklArklqakYiyLPnakaas 606
                 e++k+Alll av p++gGv+i++ +Gtak+++ara++++Lp+ie ++g                                   + p+v++pl+v edrLlG++Dve+s++ g++v+ +glla+a+rgvlyvd +nlldes++n ll+al++g v vereG+svr+P++++Liat +pee    lrehl+DR++  +s++ e+  +++r+e+v++       ++ + + + +   ++++ i+ aRe+lk  ++ +eq k+l +eav+ Gv+ghR ++fav aA+a+aAl+gR +Ve++Dlk+ v+l ++pR t+   ++++++  +pppPpPp+++   +e+e+ee+e+ee++ee+e+    +pee+++d +++ l+++++++++ka     k+g+sG++g ++s+eRGRyi++ l++ ++++++av+at+r+AaPyqk Rr+++++       +  r v++e+sD+r K+++rk+g l+iFvVDASGs+a++R++ AKGA+  LL+eaY sRD++ li+F G+ a+v+lpP+rS+++ak+rl+++P G g+PL +al +a +v++ a+k g v+++++v i DGRaNv+l +s++ P+++  +++elkeevl+ a+ +     + +l++DT+nkfvstG a+++Ar++q+kY y+P+a+++ 
  MMETSP1137-20121227|5128_1  29 EAIKTALLLCAVNPKMGGVVISGSRGTAKSVMARAVHSLLPPIEIVKGNqfnsdlesgefdsflkadlasgkvkmedleteiiEPPFVQIPLDVLEDRLLGSVDVEKSVRTGNTVFEPGLLAQAHRGVLYVDDINLLDESASNLLLEALSTGWVTVEREGLSVRHPCRPLLIATFNPEE--AELREHLMDRIGTCLSADaEPLAQDDRLEAVQRaldfaADPQAFIKSYGEVEDQMRTSIIFAREYLKGLRVNKEQAKYLCEEAVRAGVQGHRGEIFAVEAARANAALNGRDRVEADDLKMGVRLCIAPRGTQISAPPEDEMMqQPPPPPPPQQQddtEEPEKEEEEQEEAQEEQEDTapPVPEEFMFDVEGVALDPDVMKFANKA-----KTGRSGSRGMIFSEERGRYIKPILPR-GKVRKLAVDATMRTAAPYQKRRRARAEEAaangdnSlLRGVYIEQSDVRSKKMARKAGSLVIFVVDASGSMALNRMNAAKGAAINLLGEAYQSRDKICLITFQGDYAQVILPPTRSIAMAKNRLERMPXG-GSPLSHALNQAAQVGLTAQKTGdVGEVLVVCISDGRANVPLSTSVGePSETPMEKNELKEEVLKTAKMLGClPNFKVLMLDTENKFVSTGLAQEIARAAQGKYHYIPKASEQA 681
                 789*****************************************99999**********************************9***********************************************************************************************..8999***********9973578999********9988666677778888888899999**************************************************************************999887776536666666644412344555555555555544444889************************8.....5678*********************9.99999***************999876554445553246899***************************************************************************************97.59******************999********************986377777788*************975279***********************************9876 PP

>> TIGR02442  Cob-chelat-sub: cobaltochelatase subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  644.0   0.6  1.4e-196  5.7e-194       1     640 [.      20     674 ..      20     675 .. 0.87

  Alignments for each domain:
  == domain 1    score: 644.0 bits;  conditional E-value: 1.4e-196
   TIGR02442   1 fPfsaivgqeklklaLllnavdpkiggvlirGekGtaKstaaRaLaallpdievvagckfscdpedpe..el..ceecrkkle...lesekrpvpfvelplgateDrvvGsldieralkeGekafqpGlLaeahrgiLYiDEvNLLddhlvdvlLdaaasGvnrvEReGlsvshparfvLvgTmNpEEGeLrpqllDrfglavevaas.edpeerveivkrrlafdadpeafaakykkeeeelrerivaArsllpevrlsdelleliaelcieleveghRAdivlaraaralAAldgrrevteedvreaaeLvlkhRrr..rkpfeeeqekeekkleekkeeakpdeekedeseekekeeskkqeeeepgkddekeedekeeaeeeaesaeevalepagkifrvkllavskarargasGrrsktrsdkrgryvkaernreeaddlavdAtlraaalrqkar..........rk.....avaveeedlrekvregragalvifvvDASgSMaarkrmkaakgavlsLLrdaYqkrdkvaliaFrgeeaevllpptssvelakreLeelptggrtPLaagLkkaaevlknellkdkderplvvvitDGraNva.s..lgedpledartlaeklaae............giklvvidteesefvklglakdlaealgaeylel 640
                 fP++ +vgqe++k+aLll+av+pk+ggv+i+G++GtaKs++aRa+++llp+ie v+g +f+ d e++e  ++   + ++ k++   le+e  + pfv++pl + eDr++Gs+d+e+++++G+ +f+pGlLa+ahrg+LY+D++NLLd++  ++lL+a+++G ++vEReGlsv+hp+r +L++T+NpEE eLr++l+Dr+g +++++a+   ++ r+e v+r+l+f adp+af + y + e+++r+ i+ Ar+ l+  r+++e+++++ e++++++v+ghR +i++++aara+AAl+gr++v+++d++  ++L +++R +  + p+e+e          ++ +++p ++++d+  e++++e           ++e+ee ++e+++  +  +ee++++ +g ++++++++++++ ++g+sG r  + s++rgry+k+  +r+++++lavdAt+r aa++qk+r          ++      v +e++d+r+k  +++ag+lvifvvDASgSMa++ rm+aakga+++LL +aYq rdk++li+F+g+ a+v+lppt+s+++ak++Le++p gg +PL+++L++aa+v  ++++  +  ++lvv i+DGraNv+ s  +ge+  +++++ +++l++e            ++k++++dte+ +fv++gla+++a+a++++y ++
  MMETSP1137-20121227|5128_1  20 FPLASVVGQEAIKTALLLCAVNPKMGGVVISGSRGTAKSVMARAVHSLLPPIEIVKGNQFNSDLESGEfdSFlkADLASGKVKmedLETEIIEPPFVQIPLDVLEDRLLGSVDVEKSVRTGNTVFEPGLLAQAHRGVLYVDDINLLDESASNLLLEALSTGWVTVEREGLSVRHPCRPLLIATFNPEEAELREHLMDRIGTCLSADAEpLAQDDRLEAVQRALDFAADPQAFIKSYGEVEDQMRTSIIFAREYLKGLRVNKEQAKYLCEEAVRAGVQGHRGEIFAVEAARANAALNGRDRVEADDLKMGVRLCIAPRGTqiSAPPEDE-------M-MQQPPPPPPPQQQDDT-EEPEKE-----------EEEQEEAQEEQEDTAPPVPEEFMFDVEGVALDPDVMKFANKAKTGRSGSRGMIFSEERGRYIKPILPRGKVRKLAVDATMRTAAPYQKRRraraeeaaanGDnsllrGVYIEQSDVRSKKMARKAGSLVIFVVDASGSMALN-RMNAAKGAAINLLGEAYQSRDKICLITFQGDYAQVILPPTRSIAMAKNRLERMPXGG-SPLSHALNQAAQVGLTAQKTGDVGEVLVVCISDGRANVPlStsVGEP--SETPMEKNELKEEvlktakmlgclpNFKVLMLDTEN-KFVSTGLAQEIARAAQGKYHYI 674
                 9**************************************************************7665421221122223333343555666699***************************************************************************************************************98636899********************************************************************************************************98333444443.......2.2222222333333333.222211...........233334444444444445789******************999**********************************************998888777664115678889*******************************99.******************************************************876.8*************************************986565555..33344444444444444799***************7.******************9887 PP

>> TIGR02030  BchI-ChlI: magnesium chelatase ATPase subunit I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  268.5   0.2   4.3e-83   1.8e-80       1     313 [.      20     336 ..      20     347 .. 0.92

  Alignments for each domain:
  == domain 1    score: 268.5 bits;  conditional E-value: 4.3e-83
   TIGR02030   1 fpfsaivGqeelklallltvidpkiGGvlvlGdrGtgkstavralaallpeikavagcpvnsapsareelceevraledss...kklaviekkvpvvdlplGatedrvvGtldieralteGvkafepGllaranrGflyidevnlledhlvdvlldvaasGvnvvereGvsirhparfvlvGsGnpeeGelrpqlldrfGlhaeirt.vrdveerveivkrrdeydadpdafvekyakedeklqakivnaqaalpqvklpddvlvkvaelcvelevdGlrGeltlaraakalaaleGreevtvddvrrvavlalrhr 313
                 fp++++vGqe +k alll++++pk+GGv++ G rGt+ks   ra+ +llp+i++v+g  +ns  ++ e ++   + l + +   ++l    ++ p v++pl + edr+ G++d+e+++  G   fepGlla+a rG+ly+d++nll++   ++ll++ ++G+ +vereG+s+rhp r +l+ + npee elr  l+dr+G      + +   + r+e v+r  ++ adp+af++ y++ ++++++ i+ a++ l  ++++++    ++e  v+ +v+G+rGe+    aa+a aal+Gr+ v  dd++  + l++  r
  MMETSP1137-20121227|5128_1  20 FPLASVVGQEAIKTALLLCAVNPKMGGVVISGSRGTAKSVMARAVHSLLPPIEIVKGNQFNSDLESGEFDSFLKADLASGKvkmEDLETEIIEPPFVQIPLDVLEDRLLGSVDVEKSVRTGNTVFEPGLLAQAHRGVLYVDDINLLDESASNLLLEALSTGWVTVEREGLSVRHPCRPLLIATFNPEEAELREHLMDRIGTCLSADAePLAQDDRLEAVQRALDFAADPQAFIKSYGEVEDQMRTSIIFAREYLKGLRVNKEQAKYLCEEAVRAGVQGHRGEIFAVEAARANAALNGRDRVEADDLKMGVRLCIAPR 336
                 8************************************************************99888887776655555555222333333345689********************************************************************************************************66555431567789*************************************************999*****************************************9999998765 PP

>> TIGR00368  TIGR00368: Mg chelatase-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.4   0.0   0.00036      0.15     189     239 ..      20      72 ..      12     101 .. 0.85
   2 !   19.6   0.0   1.5e-07     6e-05     279     367 ..     137     228 ..     130     290 .. 0.78

  Alignments for each domain:
  == domain 1    score: 8.4 bits;  conditional E-value: 0.00036
   TIGR00368 189 ldlkdvkGqqrakraleiaaaGgh..nllllGPPGsGktllakrlqgllPelt 239
                 + l  v+Gq+  k al ++a       +++ G  G+ k ++a+ +++llP+++
  MMETSP1137-20121227|5128_1  20 FPLASVVGQEAIKTALLLCAVNPKmgGVVISGSRGTAKSVMARAVHSLLPPIE 72 
                 56889***********998876442269999*******************985 PP

  == domain 2    score: 19.6 bits;  conditional E-value: 1.5e-07
   TIGR00368 279 lvGGGaiPkPGeislahnGvlfldellefkrkvldalrePledgeisisrakakilyParfqlvaamnpsPt...Ghygdkitdnrcspqqi 367
                 +  G ++ +PG ++ ah+Gvl++d++  ++ +  + l e l  g +++ r    + +P r  l+a+ np  +    h+ d+i  + +++ + 
  MMETSP1137-20121227|5128_1 137 VRTGNTVFEPGLLAQAHRGVLYVDDINLLDESASNLLLEALSTGWVTVEREGLSVRHPCRPLLIATFNPEEAelrEHLMDRIGTCLSADAEP 228
                 55688999************************************************************976522245666666666655555 PP

>> TIGR00764  lon_rel: putative ATP-dependent protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.4   0.0   0.00073       0.3      19      66 ..      24      73 ..      21      83 .. 0.78
   2 !   13.8   0.0   8.4e-06    0.0035     208     242 ..     144     178 ..     134     220 .. 0.83

  Alignments for each domain:
  == domain 1    score: 7.4 bits;  conditional E-value: 0.00073
   TIGR00764 19 qviGqdeavevik.kaakqkr.nvlliGePGvGksmlakamaellpkeel 66
                 v+Gq+    +++  a++ k   v++ G+ G+ ks++a+a+  llp  e+
  MMETSP1137-20121227|5128_1 24 SVVGQEAIKTALLlCAVNPKMgGVVISGSRGTAKSVMARAVHSLLPPIEI 73
                589998765555415555554268999******************98776 PP

  == domain 2    score: 13.8 bits;  conditional E-value: 8.4e-06
   TIGR00764 208 veaGaihrahkGvlyideiatlslkvqqslltalq 242
                  e+G++ +ah+Gvly+d+i+ l     + ll al 
  MMETSP1137-20121227|5128_1 144 FEPGLLAQAHRGVLYVDDINLLDESASNLLLEALS 178
                 589********************999999999986 PP

>> TIGR03788  marine_srt_targ: marine proteobacterial sortase target protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   0.0   5.4e-08   2.2e-05     273     379 ..     498     603 ..     478     606 .. 0.73

  Alignments for each domain:
  == domain 1    score: 20.9 bits;  conditional E-value: 5.4e-08
   TIGR03788 273 evvfviDtsGsmagesieqAksalllal.sqLkpkDrfnvieFdsdvellfkkavpAtaenlerArqfvagLqAdGGtEmaeaLeaale.daaseesgalrq..vvFltDG 379
                  v+fv+D sGsma + ++ Ak a    l +  +++D++ +i F+ d  ++    +   ++ ++ A++ ++++   GG  +++aL++a +   +++++g +    vv + DG
  MMETSP1137-20121227|5128_1 498 LVIFVVDASGSMALNRMNAAKGAAINLLgEAYQSRDKICLITFQGDYAQV----ILPPTRSIAMAKNRLERMP-XGGSPLSHALNQAAQvGLTAQKTGDVGEvlVVCISDG 603
                 49*******************876555527799**********9886544....4445577888888888875.6999999999998876444455555544114556666 PP

>> TIGR03436  acidobact_VWFA: VWFA-related Acidobacterial domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.0   1.7e-06   0.00071      65     145 ..     495     579 ..     448     668 .. 0.75

  Alignments for each domain:
  == domain 1    score: 17.0 bits;  conditional E-value: 1.7e-06
   TIGR03436  65 lPlslvlviDalnsqr.edlararaaaikflktvlrpedevavvtfn.eqlrllqdFTsdaklLeaaleklkp..ivekekeess 145
                 +   +++v+Da++s++ ++++ a+ aai++l +  +++d+++++tf+ + ++++ + T ++++ +++le++     + +++ ++ 
  MMETSP1137-20121227|5128_1 495 AGSLVIFVVDASGSMAlNRMNAAKGAAINLLGEAYQSRDKICLITFQgDYAQVILPPTRSIAMAKNRLERMPXggSPLSHALNQA 579
                 3444599******997367788999**********************8889999****************988442223333322 PP

>> TIGR01818  ntrC: nitrogen regulation protein NR(I)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.0     0.023       9.3     160     179 ..      47      66 ..      39      70 .. 0.92
   2 !    8.8   0.0   0.00031      0.13     195     255 ..     117     180 ..     110     196 .. 0.87
   3 ?   -1.8   0.0      0.51   2.1e+02      69     102 ..     641     679 ..     627     695 .. 0.64

  Alignments for each domain:
  == domain 1    score: 2.7 bits;  conditional E-value: 0.023
   TIGR01818 160 vlinGesGtGkelvaralhr 179
                 v+i+G  Gt k ++ara+h 
  MMETSP1137-20121227|5128_1  47 VVISGSRGTAKSVMARAVHS 66 
                 99*****************7 PP

  == domain 2    score: 8.8 bits;  conditional E-value: 0.00031
   TIGR01818 195 aiPkdlleselfGh...ekGaftGatkrrqGrfeqadGGtlfldeiGdmPlelqtrllrvladg 255
                  iP d+le  l+G    ek   tG t  + G + qa+ G l++d+i  +   +   ll  l+ g
  MMETSP1137-20121227|5128_1 117 QIPLDVLEDRLLGSvdvEKSVRTGNTVFEPGLLAQAHRGVLYVDDINLLDESASNLLLEALSTG 180
                 59**********965559****************************988888888888777765 PP

  == domain 3    score: -1.8 bits;  conditional E-value: 0.51
   TIGR01818  69 Pklpvivmsahsdldaa.....vkayqrGafeylpkPfd 102
                 P+++v+++ +++++ ++     ++ + +G + y+pk  +
  MMETSP1137-20121227|5128_1 641 PNFKVLMLDTENKFVSTglaqeIARAAQGKYHYIPKASE 679
                 677777777666655432222277788999999999753 PP

>> TIGR02903  spore_lon_C: ATP-dependent protease, Lon family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.0     0.093        38     154     195 ..      23      64 ..      20      92 .. 0.85
   2 !   10.6   0.0   7.5e-05     0.031     257     295 ..     145     183 ..     126     203 .. 0.87
   3 ?   -3.9   0.0       1.9   7.6e+02     437     480 ..     278     321 ..     258     324 .. 0.77

  Alignments for each domain:
  == domain 1    score: 0.4 bits;  conditional E-value: 0.093
   TIGR02903 154 seivGqeraikallaklaspfpqhiilyGppGvGkttaarla 195
                   +vGqe    all     p    +++ G  G  k+ +ar +
  MMETSP1137-20121227|5128_1  23 ASVVGQEAIKTALLLCAVNPKMGGVVISGSRGTAKSVMARAV 64 
                 679****988999999999********************976 PP

  == domain 2    score: 10.6 bits;  conditional E-value: 7.5e-05
   TIGR02903 257 ksGlvteahGGvlfideiGeldvllqnkllkvledkrve 295
                  +Gl+++ah Gvl++d+i  ld    n ll  l    v+
  MMETSP1137-20121227|5128_1 145 EPGLLAQAHRGVLYVDDINLLDESASNLLLEALSTGWVT 183
                 57*************************999998766665 PP

  == domain 3    score: -3.9 bits;  conditional E-value: 1.9
   TIGR02903 437 klkaedkaevGkvfGlGvsgylGsvleieavafeakekGkGtvr 480
                  +k+++k+   +    Gv+g+ G ++ +ea+  +a  +G+  v 
  MMETSP1137-20121227|5128_1 278 VNKEQAKYLCEEAVRAGVQGHRGEIFAVEAARANAALNGRDRVE 321
                 56666777777777889999999999999999999999987775 PP

>> TIGR02915  PEP_resp_reg: PEP-CTERM-box response regulator transcription factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   0.0    0.0026       1.1     163     185 ..      45      67 ..      25      72 .. 0.84
   2 ?    4.1   0.0    0.0089       3.6     200     250 ..     117     170 ..     106     192 .. 0.84

  Alignments for each domain:
  == domain 1    score: 5.8 bits;  conditional E-value: 0.0026
   TIGR02915 163 vtvlllGesGtGkevlaralhel 185
                   v++ G  Gt k v+ara+h l
  MMETSP1137-20121227|5128_1  45 GGVVISGSRGTAKSVMARAVHSL 67 
                 5799*****************87 PP

  == domain 2    score: 4.1 bits;  conditional E-value: 0.0089
   TIGR02915 200 aiPenlleselfG...yekGaftGavkqtlGkielaqeGtlfldeiGdlPlalq 250
                  iP ++le  l+G    ek   tG +    G +  a++G l++d+i  l  +  
  MMETSP1137-20121227|5128_1 117 QIPLDVLEDRLLGsvdVEKSVRTGNTVFEPGLLAQAHRGVLYVDDINLLDESAS 170
                 58899999999985446*****************************87766555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (696 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       157  (0.038274); expected 82.0 (0.02)
Passed bias filter:                      126  (0.0307167); expected 82.0 (0.02)
Passed Vit filter:                        23  (0.00560702); expected 4.1 (0.001)
Passed Fwd filter:                        11  (0.00268162); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.64u 0.20s 00:00:00.84 Elapsed: 00:00:01.04
# Mc/sec: 883.31
//
Query:       MMETSP1137-20121227|5129_1  [L=336]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00037   16.6   0.1     0.0011   15.0   0.0    1.7  1  TIGR04075 bacter_Pnkp: polynucleotide kinase-phosphatase


Domain annotation for each model (and alignments):
>> TIGR04075  bacter_Pnkp: polynucleotide kinase-phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   2.7e-07    0.0011     176     268 ..      70     149 ..      31     157 .. 0.71

  Alignments for each domain:
  == domain 1    score: 15.0 bits;  conditional E-value: 2.7e-07
   TIGR04075 176 rdekGPfdiiGdvhGCldeleelleklGyeveeeeegkavevthpegrkavflGdlvdrGpdspdvlrlvmsm.vka.gaalcvpGnheekllrk 268
                 ++   P  ++Gd+hG + +l el++  G +v +               + vf+Gd+vdrG  s++++ l  ++ v+   +   ++Gnhe++ + +
  MMETSP1137-20121227|5129_1  70 HHVAIPATVVGDIHGQFYDLLELFDV-GGQVPSV--------------NYVFMGDFVDRGYYSVETFLLLLALkVRYpKRVTLIRGNHESRQITQ 149
                 44556889999999999999888764.4333333..............469************9987666554255515667799****986655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (336 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       251  (0.0611897); expected 82.0 (0.02)
Passed bias filter:                      229  (0.0558264); expected 82.0 (0.02)
Passed Vit filter:                        21  (0.00511945); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.17s 00:00:00.50 Elapsed: 00:00:00.42
# Mc/sec: 1055.91
//
Query:       MMETSP1137-20121227|5130_1  [L=263]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (263 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       332  (0.0809361); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.18s 00:00:00.42 Elapsed: 00:00:00.33
# Mc/sec: 1051.91
//
Query:       MMETSP1137-20121227|5131_1  [L=257]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (257 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.14s 00:00:00.36 Elapsed: 00:00:00.35
# Mc/sec: 969.18
//
Query:       MMETSP1137-20121227|5132_1  [L=325]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0048   12.4  11.6     0.0064   12.0   8.0    1.0  1  TIGR02169 SMC_prok_A: chromosome segregation protein SMC


Domain annotation for each model (and alignments):
>> TIGR02169  SMC_prok_A: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.0   8.0   1.6e-06    0.0064     310     474 ..      80     251 ..      76     267 .. 0.47

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 1.6e-06
   TIGR02169 310 aiaekeeeledaeerlakaeaeidklke.....eieelereieeekkereklkeelkel.keeleelraeleevdkeaaelreelkelkekleklkeelnelkreldrlleelkrleee.laelkaelerieekiaeleeeleelaeeikkaeqkleqlkedlekaekelrk 474
                 +i+++ eel+++ ++++k  + ++kl++     +++el++++++ k+  ++ k e++el ++el++  a+++e   + ++l+ +l++++ + e+++  +   +r ++    e  ++  + + +  a l r++++iae  +   + a  ik+++++l+++  d  k++++l +
  MMETSP1137-20121227|5132_1  80 EIDFYDEELKELTQEIEKGLEGLRKLNAnakieRLHELNGRLQRAKQSLQSFKVEMRELpRAELAAYDAKAQEHHGALQRLQSALSSARGEAERANGTHAVARRVEEMSAAEIIQMGGRtQDKSLASLGRMKNQIAESMQIGAATATTIKTQTEQLQNIDTDIMKIKSNLNR 251
                 4555555555555555555554444433110002334444444444444444444444324444444455555555555555555555555554444444444433333333333332202333345555556666666666666666666666666666666666665554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (325 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       405  (0.0987323); expected 82.0 (0.02)
Passed bias filter:                      191  (0.0465627); expected 82.0 (0.02)
Passed Vit filter:                        20  (0.00487567); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.18s 00:00:00.51 Elapsed: 00:00:00.42
# Mc/sec: 1021.34
//
Query:       MMETSP1137-20121227|5133_1  [L=503]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (503 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        61  (0.0148708); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.16s 00:00:00.48 Elapsed: 00:00:00.44
# Mc/sec: 1508.88
//
Query:       MMETSP1137-20121227|5134_1  [L=654]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (654 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        78  (0.0190151); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.15s 00:00:00.55 Elapsed: 00:00:00.45
# Mc/sec: 1918.24
//
Query:       MMETSP1137-20121227|5135_1  [L=211]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (211 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       150  (0.0365675); expected 82.0 (0.02)
Passed bias filter:                      120  (0.029254); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.12s 00:00:00.32 Elapsed: 00:00:00.32
# Mc/sec: 870.30
//
Query:       MMETSP1137-20121227|5136_1  [L=573]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.1e-48  161.9   0.0    2.1e-46  156.3   0.0    2.5  1  TIGR00713 hemL: glutamate-1-semialdehyde-2,1-aminomutase
    1.3e-22   78.0   0.0    2.3e-20   70.6   0.0    2.6  1  TIGR00707 argD: acetylornithine and succinylornithine transaminases
    3.9e-20   69.6   0.0    3.3e-09   33.6   0.0    2.6  3  TIGR00700 GABAtrnsam: 4-aminobutyrate transaminase
      3e-17   60.1   0.0    2.5e-09   34.0   0.0    2.5  3  TIGR00508 bioA: adenosylmethionine-8-amino-7-oxononanoate transaminase
    2.1e-14   51.1   0.0    5.6e-09   33.3   0.0    2.3  2  TIGR03246 arg_catab_astC: succinylornithine transaminase family
    5.1e-14   49.5   0.0    1.4e-07   28.3   0.0    2.3  2  TIGR00709 dat: 2,4-diaminobutyrate 4-transaminase
    7.6e-14   49.1   0.0    1.5e-09   34.9   0.0    3.0  2  TIGR01885 Orn_aminotrans: ornithine--oxo-acid transaminase
      4e-12   43.3   0.0    1.1e-11   41.8   0.0    1.6  2  TIGR02407 ectoine_ectB: diaminobutyrate--2-oxoglutarate aminotransferase
    2.3e-11   41.1   0.0    7.6e-07   26.2   0.0    2.5  2  TIGR03372 putres_am_tran: putrescine aminotransferase
    2.6e-05   20.7   0.0     0.0004   16.8   0.0    2.3  2  TIGR03251 LAT_fam: L-lysine 6-transaminase
     0.0016   15.1   0.0      0.045   10.3   0.0    2.5  2  TIGR00699 GABAtrns_euk: 4-aminobutyrate aminotransferase
     0.0069   14.3   0.1      0.011   13.6   0.1    1.2  1  TIGR03587 Pse_Me-ase: pseudaminic acid biosynthesis-associated methylase


Domain annotation for each model (and alignments):
>> TIGR00713  hemL: glutamate-1-semialdehyde-2,1-aminomutase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  156.3   0.0   6.1e-49   2.1e-46      32     358 ..     143     482 ..     132     491 .. 0.80

  Alignments for each domain:
  == domain 1    score: 156.3 bits;  conditional E-value: 6.1e-49
   TIGR00713  32 lfvekakgallldvdgneyiDyvlsyGplilGha..hekvveavkealerGlsyGapteaeielakeiiervksvekvRlvnsGteatmsavRlaRgftgrdkiikfeGcyhGhaDalLvkagsgaatlglpsslgvpeeaakltlvlpyndle.aleevleelgeeiag....vivep.vagnmgvvlpkkeflealrelteengallilDevvtGFRvalegaqelygvepDlvvlGkilggGlPvgalggrreimerlaPeGkv...yqaGtlsgnplavaaGlatlkaleee...evykeleelaeklaegleevleekgievevvrvgsmlslfft 358
                 ++ e +kg +++dvdgn+ +D  +syG  ++G++  ++ + e +++  e G     p    i    + +  v+ ++ v +  sGtea m avRl R  t+r+ i++f G+yhG  D +    g     +++ +       a  ++++++  ++  +l + l+ l+   a     v++++ v   +      + +l++lr++++e ++ l++Dev tGFR+a +gaqe+ygv++D+vv+Gk lggG+Pvg++ g++e+m r+ Pe ++   y  Gt+++ p ++   +  l++++ +     y++ ++l ++ +++ ++++ +++++++v  + +++++ ++
  MMETSP1137-20121227|5136_1 143 FIAEASKGPYIIDVDGNKALDISGSYGVNVHGYTfyKKCMSEGLSRVEELGPNVLGPLHPAIFDVLKHLTAVSGQDEVSFHMSGTEAVMCAVRLCRFNTKRKLIVQFAGAYHGWWDGVQPGPGNERLVHDTLTLKDLSPLAL-KLIKARRHEIAaVLVSPLQGLNPGSAPpsdlVLMDSkVRKTADRDNTYRTWLQTLRATCSEAEVPLVFDEVYTGFRMAPGGAQEYYGVRADMVVYGKTLGGGMPVGVVCGKKELMARFDPEHPLrvsYVIGTFAAAPATLGPMSVFLNHVTTKeaaAKYENAQKLVDEWQNKTNKLMAAEDLPIRVDALTTVFTMIYK 482
                 56677899************************9733566778888888888765555555554445556778999******************************************9776666666665555554444444.44555544444045566776665555222336666524455566677899*********************************************************************998865569********99988877777777665222569999999999**********************99998765 PP

>> TIGR00707  argD: acetylornithine and succinylornithine transaminases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.6   0.0   6.7e-23   2.3e-20      10     263 ..     142     405 ..     134     466 .. 0.73

  Alignments for each domain:
  == domain 1    score: 70.6 bits;  conditional E-value: 6.7e-23
   TIGR00707  10 elaivrgkgakvyDveGkeYlDlvaGiavnalGHahpk.lvealkeqleklvhvsnlyateeqlelaeklvelsaadrvffcnsGaeanEaAlklarkaarkkgkekkkivafknsFHGRtlgalsatgkpkykkdFeplvpgvkyveyndiealkeaiddetaavivEpiqG..............EgGvvp.ad.....keflkalrelceekdvllivDEvqtGlGRtGklfayehygvePDiltlakalggGvPigavlakeevaealtvG 263
                  ++ + +kg ++ Dv+G + lD+ +  +vn+ G++  k  +    + +e+l        ++   ++ ++l ++s++d v f  sG+ea+  A++l r  ++     +k iv f  ++HG   g     g+++  +d   l  +++ +++  i+a      +e+aav+v p+qG              ++ v++ ad     + +l++lr  c+e +v l++DEv tG+ R     a+e+ygv+ D++  +k+lggG+P+g+v  k+e+   +++ 
  MMETSP1137-20121227|5136_1 142 GFIAEASKGPYIIDVDGNKALDISGSYGVNVHGYTFYKkCMSEGLSRVEELGPNVLGPLHPAIFDVLKHLTAVSGQDEVSFHMSGTEAVMCAVRLCRFNTK-----RKLIVQFAGAYHGWWDGVQPGPGNERLVHDTLTL-KDLSPLALKLIKAR----RHEIAAVLVSPLQGlnpgsappsdlvlmDSKVRKtADrdntyRTWLQTLRATCSEAEVPLVFDEVYTGF-RMAPGGAQEYYGVRADMVVYGKTLGGGMPVGVVCGKKELMARFDPE 405
                 56677899**********************9888753313333333456665555555688899*********************************9999.....99***********999888888888777665554.46666666555544....4789*********9633332222222222233321222222235799**********************.**************************************99888763 PP

>> TIGR00700  GABAtrnsam: 4-aminobutyrate transaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.0   0.0   1.6e-11   5.4e-09      17     132 ..     143     255 ..     135     258 .. 0.83
   2 ?   -3.1   0.0       1.4   4.7e+02     193     210 ..     289     306 ..     281     318 .. 0.72
   3 !   33.6   0.0   9.7e-12   3.3e-09     218     331 ..     334     452 ..     330     479 .. 0.77

  Alignments for each domain:
  == domain 1    score: 33.0 bits;  conditional E-value: 1.6e-11
   TIGR00700  17 vlaakaegaelkdvdGnrlidlaagiavlnvGhshPk.vveavkrqveelthtafqvvpyesyvelaeklnaiaPgsgekkavllnsGaeavenavkiarkytgrpgvvafsrgfhG 132
                 ++a  ++g  + dvdGn+ +d++++ +v   G +  k  +     +veel   + +v+  + + ++ + l  ++ +sg+    +  sG+eav  av++ r  t+r+ +v f +++hG
  MMETSP1137-20121227|5136_1 143 FIAEASKGPYIIDVDGNKALDISGSYGVNVHGYTFYKkCMSEGLSRVEEL---GPNVL-GPLHPAIFDVLKHLTAVSGQDEVSFHMSGTEAVMCAVRLCRFNTKRKLIVQFAGAYHG 255
                 66777889999*****************9999987651444444555555...55554.4566778899999********************************************9 PP

  == domain 2    score: -3.1 bits;  conditional E-value: 1.4
   TIGR00700 193 veaeqvaavvlePvqGeG 210
                    +++aav++ P+qG  
  MMETSP1137-20121227|5136_1 289 ARRHEIAAVLVSPLQGLN 306
                 556789*********965 PP

  == domain 3    score: 33.6 bits;  conditional E-value: 9.7e-12
   TIGR00700 218 elvaavaslckehgivliadevqtGfartGklfaieheddkPdlitvaksladGlPlsgvvGraeil...dapap...GglGGtyaGnPlavaaalavldiieeeglieraeqigklvkd 331
                  ++++++  c e ++ l+ dev tGf r     a e+++++ d+++  k+l +G+P+  v G+ e++   d  +p     + Gt+a +P +       l+ +  +  + + e+ +klv++
  MMETSP1137-20121227|5136_1 334 TWLQTLRATCSEAEVPLVFDEVYTGF-RMAPGGAQEYYGVRADMVVYGKTLGGGMPVGVVCGKKELMarfDPEHPlrvSYVIGTFAAAPATLGPMSVFLNHVTTKEAAAKYENAQKLVDE 452
                 57899*********************.6667789********************************933333443111557799999999988887777776655555555555554443 PP

>> TIGR00508  bioA: adenosylmethionine-8-amino-7-oxononanoate transaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.4   0.0   1.2e-08   4.3e-06      17     135 ..     145     255 ..     131     260 .. 0.83
   2 ?   -2.4   0.0      0.86     3e+02     187     204 ..     285     302 ..     276     307 .. 0.86
   3 !   34.0   0.0   7.5e-12   2.5e-09     216     338 ..     333     453 ..     316     495 .. 0.77

  Alignments for each domain:
  == domain 1    score: 23.4 bits;  conditional E-value: 1.2e-08
   TIGR00508  17 vekaegvyltdedgkeliDgisSwwvavhGhnhpelneaikeqleklehv..ifaglthepaieLaekLveilpeglekvffsdsGsvavEvalKmalqywqnkgekekkkflalengYHG 135
                  e+++g y++d dg++ +D   S+ v+vhG+     ++ ++e l+++e     ++g  h    ++ ++L+++   g+++v f  sG  av +a++++        ++++k ++++ ++YHG
  MMETSP1137-20121227|5136_1 145 AEASKGPYIIDVDGNKALDISGSYGVNVHGYTFY--KKCMSEGLSRVEELgpNVLGPLHPAIFDVLKHLTAVS--GQDEVSFHMSGTEAVMCAVRLCR------FNTKRKLIVQFAGAYHG 255
                 56789**************************853..4556666666655422356778************998..999****************9973......3456889*********9 PP

  == domain 2    score: -2.4 bits;  conditional E-value: 0.86
   TIGR00508 187 klleehaeeiaalivEPl 204
                 kl++++++eiaa++v Pl
  MMETSP1137-20121227|5136_1 285 KLIKARRHEIAAVLVSPL 302
                 6889999********996 PP

  == domain 3    score: 34.0 bits;  conditional E-value: 7.5e-12
   TIGR00508 216 peyLkklrelcdeydvlliaDEiatGfgrtGklFacehagvtPDilclsKaltgGylplaatltteeiyeaflsdeeekaflHghtytgnplacavAlaslelleeeeilekvkeieaqlkee 338
                  ++L++lr++c+e++v l++DE+ tGf r     a e+ gv  D+++ +K l gG +p+ +++ ++e++  f  ++  ++ +   t+ + p         l+ ++++e  +k ++ ++ + e 
  MMETSP1137-20121227|5136_1 333 RTWLQTLRATCSEAEVPLVFDEVYTGF-RMAPGGAQEYYGVRADMVVYGKTLGGG-MPVGVVCGKKELMARFDPEHPLRVSYVIGTFAAAPATLGPMSVFLNHVTTKEAAAKYENAQKLVDEW 453
                 5689***********************.667778******************777.8***********9999888777777767777777754444444444444444444444444444444 PP

>> TIGR03246  arg_catab_astC: succinylornithine transaminase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   3.4e-06    0.0012      19     213 ..     143     330 ..     131     333 .. 0.75
   2 !   33.3   0.0   1.6e-11   5.6e-09     199     269 ..     333     402 ..     329     460 .. 0.87

  Alignments for each domain:
  == domain 1    score: 15.7 bits;  conditional E-value: 3.4e-06
   TIGR03246  19 fipvrgeGsrvwdqegkeyidfaGGiavnalGhahpelvealkeqaeklwhlg.ngyt..nepvlrlakklvdatfadkvffcnsGaeaneaalklarkvaldkygaekseivafknsfhGrtlftvsvGGqakysedfaplpegikhaayndlealkalisdktcavivepiqG.egGvvpadkafl..kglrelcdrhn 213
                 fi+  ++G  + d +g++ +d++G   vn  G+     ++ ++e  +++  lg n++     +++ + k+l+  +  d v f  sG+ea   a++l r      + ++++ iv f  ++hG         G+ +  +d     ++++ +a   ++a ++ i     av+v p+qG + G  p+++  l   ++r+  dr n
  MMETSP1137-20121227|5136_1 143 FIAEASKGPYIIDVDGNKALDISGSYGVNVHGY--TFYKKCMSEGLSRVEELGpNVLGplHPAIFDVLKHLTAVSGQDEVSFHMSGTEAVMCAVRLCR------FNTKRKLIVQFAGAYHGWWDGVQPGPGNERLVHDTL-TLKDLSPLALKLIKARRHEI----AAVLVSPLQGlNPGSAPPSDLVLmdSKVRKTADRDN 330
                 899999***********************8665..567889999999999998455542145677999***************************997......6667889*********97544333445556555543.44677777777777766665....578888888843466655555442235677776665 PP

  == domain 2    score: 33.3 bits;  conditional E-value: 1.6e-11
   TIGR03246 199 kaflkglrelcdrhnallifdevqtGvGrtGelyaymeyGvtpdiltsakalGgGfpiGalltteelakvl 269
                 + +l++lr+ c + +  l+fdev tG  r+    a   yGv  d++   k+lGgG+p+G +  ++el + +
  MMETSP1137-20121227|5136_1 333 RTWLQTLRATCSEAEVPLVFDEVYTGF-RMAPGGAQEYYGVRADMVVYGKTLGGGMPVGVVCGKKELMARF 402
                 579***********************8.7777789999***********************9999987766 PP

>> TIGR00709  dat: 2,4-diaminobutyrate 4-transaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.0   3.4e-07   0.00012      19     145 ..     140     260 ..     126     271 .. 0.73
   2 !   28.3   0.0     4e-10   1.4e-07     227     297 ..     334     404 ..     325     461 .. 0.84

  Alignments for each domain:
  == domain 1    score: 18.7 bits;  conditional E-value: 3.4e-07
   TIGR00709  19 rklplafakakGckvtdveGkeyldflaGaGtlalGhndealkqklkdvldsglvlhtldlttklkdafieallaillkp.keeyilqftGpsGadaveaalklakkytGrsnvisfsgGfhGmtiGa 145
                 r l ++ + +kG ++ dv+G++ ld+    G    G+     k+ + + l+    l   ++  +l  a  + l+ +   + ++e  + f   sG++av +a++l +  t r  ++ f+g +hG   G 
  MMETSP1137-20121227|5136_1 140 R-LGFIAEASKGPYIIDVDGNKALDISGSYGVNVHGY--TFYKKCMSEGLSRVEEL-GPNVLGPLHPAIFDVLKHLTAVSgQDE--VSFH-MSGTEAVMCAVRLCRFNTKRKLIVQFAGAYHGWWDGV 260
                 3.67788889***************866666655554..34444444444433333.235678999999999988776542444..5554.5899****************************88776 PP

  == domain 2    score: 28.3 bits;  conditional E-value: 4e-10
   TIGR00709 227 eflrkirevtrkrdillildevqaGvarsGklfafehaGiepdvvvlskavGGglplavlaikkefda.fqp 297
                  +l+ +r  + + ++ l++dev +G+ r     a e  G++ d+vv  k++GGg+p+ v+  kke  a f+p
  MMETSP1137-20121227|5136_1 334 TWLQTLRATCSEAEVPLVFDEVYTGF-RMAPGGAQEYYGVRADMVVYGKTLGGGMPVGVVCGKKELMArFDP 404
                 7************************9.55566799************************9999886441444 PP

>> TIGR01885  Orn_aminotrans: ornithine--oxo-acid transaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.8   0.0   0.00018     0.062      23     116 ..     145     239 ..     125     255 .. 0.77
   2 !   34.9   0.0   4.4e-12   1.5e-09     207     281 ..     334     406 ..     262     473 .. 0.78

  Alignments for each domain:
  == domain 1    score: 9.8 bits;  conditional E-value: 0.00018
   TIGR01885  23 lskaeGakvwdvegkryldflsaysavnqGhchpk.ivkalveqaqkltlssra.fyndvfgefaeyvtklfGydkvlpmntGaeavetaiklark 116
                  + ++G ++ dv+g++ ld   +y    +G++  k  ++    ++++l       ++  +f ++ +++t + G d+v    +G+eav  a++l+r 
  MMETSP1137-20121227|5136_1 145 AEASKGPYIIDVDGNKALDISGSYGVNVHGYTFYKkCMSEGLSRVEELGPNVLGpLHPAIF-DVLKHLTAVSGQDEVSFHMSGTEAVMCAVRLCRF 239
                 56689****************9999888998865415555555666665544431454444.4668899*************************94 PP

  == domain 2    score: 34.9 bits;  conditional E-value: 4.4e-12
   TIGR01885 207 gylkkvrelckkynvlliadeiqtGiartGkllaveheevkPdivllGkalsgGvyPvsavladkevmltikpge 281
                  +l++ r+ c++ +v l+ de+ tG  r     a e+++v+ d+v+ Gk+l+gG+ Pv  v ++ke+m  ++p++
  MMETSP1137-20121227|5136_1 334 TWLQTLRATCSEAEVPLVFDEVYTGF-RMAPGGAQEYYGVRADMVVYGKTLGGGM-PVGVVCGKKELMARFDPEH 406
                 479999*******************7.6666779*****************9996.**************99975 PP

>> TIGR02407  ectoine_ectB: diaminobutyrate--2-oxoglutarate aminotransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0      0.76   2.6e+02      20      45 ..     144     169 ..     135     183 .. 0.79
   2 !   41.8   0.0   3.2e-14   1.1e-11     107     281 ..     225     398 ..     219     465 .. 0.86

  Alignments for each domain:
  == domain 1    score: -2.2 bits;  conditional E-value: 0.76
   TIGR02407  20 vfekakgaklldedgkeyidflagaG 45 
                 + e +kg +++d+dg++ +d   + G
  MMETSP1137-20121227|5136_1 144 IAEASKGPYIIDVDGNKALDISGSYG 169
                 67889**************9754444 PP

  == domain 2    score: 41.8 bits;  conditional E-value: 3.2e-14
   TIGR02407 107 tGtnavesalklarkvtgrenvvaftnafhGmslgslavtgnkskreeagvslsnvvrlPydgyldeevdslayleklledsssGvdlPaavil..etvqgeGGlnvaskeWlrsleklcrehdillivddiqaGcGrtGtffsfeeagikPdivclsksisGiGlPlalvllkpel 281
                  Gt+av +a++l r  t+r+ +v f+ a+hG   g     gn+   +++ ++l++ + l        + + +a l   l+    G + P+ ++l    v+     + + ++Wl++l+  c e ++ l+ d++ +G  r     + e  g++ d+v+  k+++G G+P+ +v  k+el
  MMETSP1137-20121227|5136_1 225 SGTEAVMCAVRLCRFNTKRKLIVQFAGAYHGWWDGVQPGPGNERLVHDT-LTLKDLSPLALKLIKARRHEIAAVLVSPLQGLNPGSAPPSDLVLmdSKVRKTADRDNTYRTWLQTLRATCSEAEVPLVFDEVYTGF-RMAPGGAQEYYGVRADMVVYGKTLGG-GMPVGVVCGKKEL 398
                 69****************************************9999888.88999******99999999999******************9998334688888899999**************************7.77777899******************.******9988875 PP

>> TIGR03372  putres_am_tran: putrescine aminotransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.0   0.0   4.5e-05     0.015      66     175 ..     150     255 ..     139     267 .. 0.79
   2 !   26.2   0.0   2.2e-09   7.6e-07     245     356 ..     334     443 ..     278     461 .. 0.87

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 4.5e-05
   TIGR03372  66 lntlvdtqgqeyldclggygifnvghrnpvvvaavesqlakqplhsqelldplrallaktlaaltp..gklkysffsnsgtesveaalklakayqsprgkytfiaasgafhg 175
                    ++d +g++ ld  g yg+   g+       ++ + l++      ++l pl   +   l  lt   g+   sf   sgte+v +a++l++   + r k  ++  +ga+hg
  MMETSP1137-20121227|5136_1 150 GPYIIDVDGNKALDISGSYGVNVHGYT--FYKKCMSEGLSRVEELGPNVLGPLHPAIFDVLKHLTAvsGQDEVSF-HMSGTEAVMCAVRLCRFN-TKR-K-LIVQFAGAYHG 255
                 45689***************9665654..556778899999999999*******999999999986326666665.679***********9854.333.2.34566788888 PP

  == domain 2    score: 26.2 bits;  conditional E-value: 2.2e-09
   TIGR03372 245 nyltavrklcdevgallildevqtgmgrtgkmfacehenvqpdilclakalgggvmpigatvateevfsvlfenpflhtttfggnplacaaalatvnvlleknlpeqaeikg 356
                 ++l+++r+ c e    l++dev tg+ r     a e+++v+ d+++  k+lggg mp+g     +e+++ +  +  l  +   g   a+ a+l  + v+l++   ++a+ k 
  MMETSP1137-20121227|5136_1 334 TWLQTLRATCSEAEVPLVFDEVYTGF-RMAPGGAQEYYGVRADMVVYGKTLGGG-MPVGVVCGKKELMARFDPEHPLRVSYVIGTFAAAPATLGPMSVFLNHVTTKEAAAKY 443
                 57999********************8.6667789*****************999.9****9999999887665556777777777788888899999999888877777664 PP

>> TIGR03251  LAT_fam: L-lysine 6-transaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.0     0.075        26     210     229 ..     285     304 ..     272     310 .. 0.88
   2 !   16.8   0.0   1.2e-06    0.0004     233     288 ..     329     382 ..     316     397 .. 0.84

  Alignments for each domain:
  == domain 1    score: 1.0 bits;  conditional E-value: 0.075
   TIGR03251 210 aafaeeeddiaaliiePiqg 229
                 + ++++ ++iaa+++ P+qg
  MMETSP1137-20121227|5136_1 285 KLIKARRHEIAAVLVSPLQG 304
                 568999*************8 PP

  == domain 2    score: 16.8 bits;  conditional E-value: 1.2e-06
   TIGR03251 233 dnhlrpeflralrklcdehdallvldevqtGvGltGkawayqqlgvkPdvvafGkk 288
                 dn +r ++l+ lr+ c+e ++ lv+dev tG  ++    a + +gv+ d+v++Gk 
  MMETSP1137-20121227|5136_1 329 DNTYR-TWLQTLRATCSEAEVPLVFDEVYTGFRMAP-GGAQEYYGVRADMVVYGKT 382
                 66777.589**********************98864.458899***********96 PP

>> TIGR00699  GABAtrns_euk: 4-aminobutyrate aminotransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.3   0.0   0.00013     0.045      45     137 ..     146     232 ..     130     247 .. 0.63
   2 ?    1.9   0.0     0.047        16     271     323 ..     333     382 ..     321     412 .. 0.77

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 0.00013
   TIGR00699  45 ekslGnylvdvdGnvlldlyaqiasipiGynnPallkvakspevatal.inrPalGnfpskdlakilkegilkvaPkgldsvysalaGsdanel 137
                 e s G y++dvdGn+ ld+         Gy    + k   s+   ++  +    lG + ++ ++ +lk+    +a  g+d+v+++++G++a   
  MMETSP1137-20121227|5136_1 146 EASKGPYIIDVDGNKALDISGSYGVNVHGYT---FYKKCMSEGLSRVEeLGPNVLGPLHPAIFD-VLKH---LTAVSGQDEVSFHMSGTEAVMC 232
                 7899**************9876665555663...444444444444321333345555554443.3333...2445566666666666666555 PP

  == domain 2    score: 1.9 bits;  conditional E-value: 0.047
   TIGR00699 271 ddffrklrditkkhnvvfivdevqtGvGatGklwahehwnleePadlvtfskk 323
                  ++++ lr++    +v  + dev tG   +    a e++++   ad+v + k 
  MMETSP1137-20121227|5136_1 333 RTWLQTLRATCSEAEVPLVFDEVYTGFRMAP-GGAQEYYGVR--ADMVVYGKT 382
                 5789**********************76442.2466776664..566666665 PP

>> TIGR03587  Pse_Me-ase: pseudaminic acid biosynthesis-associated methylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   0.1   3.3e-05     0.011     118     174 ..     468     525 ..     429     533 .. 0.82

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 3.3e-05
   TIGR03587 118 lsPdlletvyeelyeaskryiliaeyy.npstvevsyrGnsdrlfkrdfagelldryp 174
                 +  d l tv+  +y++ +ry ++ +yy   + + +s+ G    lf  df ++  d + 
  MMETSP1137-20121227|5136_1 468 IRVDALTTVFTMIYKVPSRYHWMYQYYlRAEGLAMSWVGTGRCLFSLDFDQKHYDEVT 525
                 45699**********************446889****************988777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (573 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       135  (0.0329108); expected 82.0 (0.02)
Passed bias filter:                      116  (0.0282789); expected 82.0 (0.02)
Passed Vit filter:                        19  (0.00463189); expected 4.1 (0.001)
Passed Fwd filter:                        12  (0.0029254); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.59u 0.19s 00:00:00.78 Elapsed: 00:00:01.08
# Mc/sec: 700.28
//
Query:       MMETSP1137-20121227|5137_1  [L=198]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (198 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        92  (0.0224281); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.14s 00:00:00.35 Elapsed: 00:00:00.48
# Mc/sec: 544.46
//
Query:       MMETSP1137-20121227|5139_1  [L=1057]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.2e-15   53.4   0.0    4.1e-07   26.7   0.0    2.2  2  TIGR02938 nifL_nitrog: nitrogen fixation negative regulator NifL
    3.3e-10   38.0   0.0     0.0011   16.9   0.0    3.1  3  TIGR00229 sensory_box: PAS domain S-box protein


Domain annotation for each model (and alignments):
>> TIGR02938  nifL_nitrog: nitrogen fixation negative regulator NifL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.7   0.0     2e-10   4.1e-07      26     110 ..      82     167 ..      79     173 .. 0.93
   2 !   24.3   0.0   1.1e-09   2.2e-06      25     110 ..     225     310 ..     207     322 .. 0.92

  Alignments for each domain:
  == domain 1    score: 26.7 bits;  conditional E-value: 2e-10
   TIGR02938  26 ilyanaafseitGyakeeviGknesvlsnrttPpevyqalwgslaekkPwaGkllnrrkdgelylaeltvaPvlneaG.etthflG 110
                 il +   ++++ G++k+e iG+  s++   +t +e  + + +sla+k+  + +l+n  k +  +  +l + P+    G e thflG
  MMETSP1137-20121227|5139_1  82 ILDVSPGWEQVCGFTKDEAIGRTCSLIQGPRTCREKLRLIHESLAKKEGIRVRLVNYTKKRVAFANNLVIEPITTPDGrEVTHFLG 167
                 6667777899***************************************************************998774789***9 PP

  == domain 2    score: 24.3 bits;  conditional E-value: 1.1e-09
   TIGR02938  25 nilyanaafseitGyakeeviGknesvlsnrttPpevyqalwgslaekkPwaGkllnrrkdgelylaeltvaPvlneaGetthflG 110
                 +++++ +a+ ++ Gy + e++Gk  s+l    t      al ++       + ++ln  kdg+  +  + v+P++n +G  th l 
  MMETSP1137-20121227|5139_1 225 EVVHVSNAWCQLYGYMPSEILGKTCSILQGPGTCISTLEALRQASIAGASITIRILNYCKDGKPVMNTVFVSPLVNTTGAVTHLLR 310
                 688999************************************998899999********************************985 PP

>> TIGR00229  sensory_box: PAS domain S-box protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0     7e-07    0.0014      26     106 ..      81     161 ..      67     169 .. 0.76
   2 !   16.9   0.0   5.4e-07    0.0011      22     107 ..     221     306 ..     211     324 .. 0.77
   3 ?   -0.3   0.0      0.12   2.4e+02      41      75 ..     900     935 ..     895     950 .. 0.80

  Alignments for each domain:
  == domain 1    score: 16.6 bits;  conditional E-value: 7e-07
   TIGR00229  26 nilyvNrafeeifGYsaeeliGrnvle.lipeedreevrerierrlegerepvseerrvkrkdGseiwvevsvspird.agge 106
                 +il+v++ +e++ G++++e+iGr+ +    p   re++r+++e   + ++ ++   +++++k+   +  ++++ pi++ +g+e
  MMETSP1137-20121227|5139_1  81 RILDVSPGWEQVCGFTKDEAIGRTCSLiQGPRTCREKLRLIHESLAK-KEGIRVRLVNYTKKR-VAFANNLVIEPITTpDGRE 161
                 89***********************9955666677777766666666.558888888884443.6677777778887776654 PP

  == domain 2    score: 16.9 bits;  conditional E-value: 5.4e-07
   TIGR00229  22 deeGnilyvNrafeeifGYsaeeliGrnvlelipeedreevrerierrle.gerepvseerrvkrkdGseiwvevsvspird.aggel 107
                 d   ++++v+ a+++++GY + e++G++ ++l  +     + e ++++   g  +++    ++ +kdG+ +   v vsp+ +  g ++
  MMETSP1137-20121227|5139_1 221 DPPFEVVHVSNAWCQLYGYMPSEILGKTCSILQGPGTCISTLEALRQASIaGA-SITIRILNY-CKDGKPVMNTVFVSPLVNtTGAVT 306
                 6667899************************7777766666666666655344.444444444.9***********999997666555 PP

  == domain 3    score: -0.3 bits;  conditional E-value: 0.12
   TIGR00229  41 saeeliGrnvlelipeedreevrerierrle.gere 75 
                  +  l Gr +   ++e  +e++ er+ +rl+ ++r+
  MMETSP1137-20121227|5139_1 900 DQRSLSGRGLDSAMSERSSERLGERLGERLSeRRRQ 935
                 667899************************944444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1057 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       108  (0.0263286); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.66u 0.18s 00:00:00.84 Elapsed: 00:00:00.81
# Mc/sec: 1722.38
//
Query:       MMETSP1137-20121227|5140_1  [L=184]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (184 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       102  (0.0248659); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.14s 00:00:00.32 Elapsed: 00:00:00.31
# Mc/sec: 783.42
//
Query:       MMETSP1137-20121227|5141_1  [L=261]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (261 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        74  (0.01804); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.16s 00:00:00.40 Elapsed: 00:00:00.44
# Mc/sec: 782.94
//
Query:       MMETSP1137-20121227|5141_2  [L=104]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (104 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        45  (0.0109703); expected 82.0 (0.02)
Passed bias filter:                       44  (0.0107265); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.16s 00:00:00.32 Elapsed: 00:00:00.34
# Mc/sec: 403.73
//
Query:       MMETSP1137-20121227|5142_1  [L=742]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (742 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       100  (0.0243784); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.18s 00:00:00.61 Elapsed: 00:00:00.61
# Mc/sec: 1605.51
//
Query:       MMETSP1137-20121227|5143_1  [L=342]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0036   14.6   0.0      0.006   13.9   0.0    1.3  1  TIGR03724 arch_bud32: Kae1-associated kinase Bud32


Domain annotation for each model (and alignments):
>> TIGR03724  arch_bud32: Kae1-associated kinase Bud32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.0   1.5e-06     0.006     111     145 ..     153     190 ..     150     196 .. 0.85

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 1.5e-06
   TIGR03724 111 ivhgDlttsNiivk...ddklyliDfGLgkkskevedk 145
                 +vhgD +++Ni +    ++ +++iDfGL  + + + d 
  MMETSP1137-20121227|5143_1 153 LVHGDAHVENIFFAkhfEGGCMFIDFGLTMMGQALSDV 190
                 89**********96566899********9998887775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (342 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        45  (0.0109703); expected 82.0 (0.02)
Passed bias filter:                       40  (0.00975134); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.25u 0.14s 00:00:00.39 Elapsed: 00:00:00.54
# Mc/sec: 835.93
//
Query:       MMETSP1137-20121227|5144_1  [L=396]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.076   10.7   1.8       0.39    8.4   0.1    2.3  2  TIGR01906 integ_TIGR01906: integral membrane protein TIGR01906


Domain annotation for each model (and alignments):
>> TIGR01906  integ_TIGR01906: integral membrane protein TIGR01906
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   0.1   9.4e-05      0.39     129     162 ..      94     129 ..      77     133 .. 0.80
   2 ?    1.1   0.1     0.016        66     102     141 ..     320     360 ..     310     370 .. 0.70

  Alignments for each domain:
  == domain 1    score: 8.4 bits;  conditional E-value: 9.4e-05
   TIGR01906 129 llllllllgilillnFekaFtlFHkifF..nndtWl 162
                  ++++l+l  l + nFe+a t FH ++   +nd W 
  MMETSP1137-20121227|5144_1  94 VVFAPLVLPALAFFNFENAVTDFHVMLDilSNDNWV 129
                 46789999999*************997444999995 PP

  == domain 2    score: 1.1 bits;  conditional E-value: 0.016
   TIGR01906 102 vllsillliakvvlkrslsllkksfifllllllllgil.il 141
                 ++l   ll a   l+r+l  l+  ++f +l+  l+gi+ + 
  MMETSP1137-20121227|5144_1 320 FILVAFLLAADQDLLRFLAPLQLRLLFAVLVGTLVGIAcVC 360
                 34444555566667888888889999999999999998554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (396 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       110  (0.0268162); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.29u 0.13s 00:00:00.42 Elapsed: 00:00:00.63
# Mc/sec: 829.65
//
Query:       MMETSP1137-20121227|5145_1  [L=443]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (443 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       101  (0.0246221); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.13s 00:00:00.43 Elapsed: 00:00:00.82
# Mc/sec: 713.06
//
Query:       MMETSP1137-20121227|5146_1  [L=397]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (397 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        93  (0.0226719); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.13s 00:00:00.43 Elapsed: 00:00:00.91
# Mc/sec: 575.82
//
Query:       MMETSP1137-20121227|5149_1  [L=200]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.1e-33  111.8   0.4      7e-33  111.6   0.3    1.0  1  TIGR02390 RNA_pol_rpoA1: DNA-directed RNA polymerase subunit A'


Domain annotation for each model (and alignments):
>> TIGR02390  RNA_pol_rpoA1: DNA-directed RNA polymerase subunit A'
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  111.6   0.3   1.7e-36     7e-33       2     104 ..      10     111 ..       9     140 .. 0.92

  Alignments for each domain:
  == domain 1    score: 111.6 bits;  conditional E-value: 1.7e-36
   TIGR02390   2 kkiksikfgllsPeeirklsvvevvtadtydedGlPiegGlmdprlGviePglrCktCggkvdeCpGhfGkielarPvvhvgfakeikkllratCrkCgrill 104
                 +kik+++fg+lsPeei+ +sv ++    t+d +G P+ +GlmdprlG i+  l+C +C  ++ eCpGhfG++el++P++hv f+++  k+lr +C +C++il 
  MMETSP1137-20121227|5149_1  10 RKIKRVQFGILSPEEIKAMSVCHIESDRTFD-NGRPVPNGLMDPRLGSIDRMLKCGSCHMEHSECPGHFGHLELVKPMYHVSFIETTVKVLRCVCFNCSKILG 111
                 689*********************9998987.69******************************************************************975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (200 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        92  (0.0224281); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.22u 0.14s 00:00:00.36 Elapsed: 00:00:00.48
# Mc/sec: 549.95
//
Query:       MMETSP1137-20121227|5150_1  [L=230]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (230 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        71  (0.0173086); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.17s 00:00:00.39 Elapsed: 00:00:00.32
# Mc/sec: 948.67
//
Query:       MMETSP1137-20121227|5151_1  [L=497]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (497 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       110  (0.0268162); expected 82.0 (0.02)
Passed bias filter:                      107  (0.0260848); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.17s 00:00:00.53 Elapsed: 00:00:00.47
# Mc/sec: 1395.71
//
Query:       MMETSP1137-20121227|5152_1  [L=179]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (179 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        64  (0.0156021); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.17s 00:00:00.36 Elapsed: 00:00:00.25
# Mc/sec: 945.04
//
Query:       MMETSP1137-20121227|5153_1  [L=454]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.8e-09   35.4   0.0      8e-09   33.2   0.0    2.0  1  TIGR01262 maiA: maleylacetoacetate isomerase
  ------ inclusion threshold ------
       0.33    7.1   8.3       0.44    6.7   5.7    1.1  1  TIGR02442 Cob-chelat-sub: cobaltochelatase subunit
        4.5    5.0  14.8          7    4.4  10.1    1.5  1  TIGR03499 FlhF: flagellar biosynthesis protein FlhF


Domain annotation for each model (and alignments):
>> TIGR01262  maiA: maleylacetoacetate isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.2   0.0   5.9e-12     8e-09      30     201 ..      21     188 ..       7     193 .. 0.83

  Alignments for each domain:
  == domain 1    score: 33.2 bits;  conditional E-value: 5.9e-12
   TIGR01262  30 vnLlkdGeqkkeefkalNPqelvPtLkidegevltqSlAiieyLeetypepaLlpkdpakrarvralalliacdihPlqNlrvlqlleeklgvdeeekkewlkhwiekGlaalEellkekagafcvGdevtladvcLvpqvynAerfevd...laqyPtlkrieealaelpafqe 201
                  ++    ++k+++f +  P ++vP+L++ e   + ++ Ai+ y+ + ++++++  +   +  +v + ++    ++     + ++ +l   +  +++++++ +k+ +++ l+ l  +l +   ++ vG+++tladv++   + nA ++  d   l+++P++ r  +++ ++p+f++
  MMETSP1137-20121227|5153_1  21 FKMGT--DNKTAAFLEKSPLGKVPVLQTAE-GAICEAAAIVRYVGRMRADTNMYGSSFFEAGQVDQWVEFAKNELDLPVGMWIYPILG-FI-NSNAKNTQQAKTELARALEVLQGHLVK--HTYLVGEAITLADVVVSCSLLNAFKLVFDaeyLKPFPAVVRWFTTCVNQPEFTA 188
                 55555..578999****************6.99************************9999999999999999998555667777776.33.345666666777888888888888776..579*********************9887766799*****************975 PP

>> TIGR02442  Cob-chelat-sub: cobaltochelatase subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   5.7   0.00032      0.44     322     397 ..     214     270 ..     199     325 .. 0.50

  Alignments for each domain:
  == domain 1    score: 6.7 bits;  conditional E-value: 0.00032
   TIGR02442 322 eekkleekkeeakpdeekedeseekekeeskkqeeeepgkddekeedekeeaeeeaesaeevalepagkifrvkll 397
                 + +k+ e++++++p++++++++ e++k +++k+ +ee +k+++k ed++++a +e e                   
  MMETSP1137-20121227|5153_1 214 KADKPTEEPKQKEPKQKEPKKE-EDKKVKKEKAPKEEKKKEEKKAEDPAAAAAKERE------------------K 270
                 1222222222222222222222.1111111111122333333333333333333332..................2 PP

>> TIGR03499  FlhF: flagellar biosynthesis protein FlhF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4  10.1    0.0052         7      59     197 ..     216     391 ..     183     397 .. 0.56

  Alignments for each domain:
  == domain 1    score: 4.4 bits;  conditional E-value: 0.0052
   TIGR03499  59 aaseeeeakkaleeaepkklskaeekeekekeaeekaaeaaqeaekkleeae.....................................eelrkelkalkellekqlselal..eeedperakllkklleagvseelarelleklke.kedaeeareklreaLekklsvkkeedeilek 197
                  + +ee+++k+ +++epkk++  ++k +kek  +e++++++++ae+++++a+                                     e+   +l+ l+ +++++++  ++  e +++   ++ k+  +agv++  + +++   k+ k d +e++e++ +a+ +k+ vk+  d +  k
  MMETSP1137-20121227|5153_1 216 DKPTEEPKQKEPKQKEPKKEE--DKKVKKEKAPKEEKKKEEKKAEDPAAAAAkereklvkkvikeggkkgveiegasdmggleffcttiESPDGDLELLQLAMTSMNADPEEgaEDRKGCSGHVGKMIFSAGVQQLAIVSYVPADKMaKVDITEWTENVVKAVGGKV-VKTSXDAVSPK 391
                 222222222222222222222..222222222222222222222222222223455666666778888888888888888888888777777777777777777777776667777777777777777777777766666655555555666666666666666666.55555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (454 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       283  (0.0689907); expected 82.0 (0.02)
Passed bias filter:                      150  (0.0365675); expected 82.0 (0.02)
Passed Vit filter:                        27  (0.00658216); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.45u 0.17s 00:00:00.62 Elapsed: 00:00:00.49
# Mc/sec: 1222.92
//
Query:       MMETSP1137-20121227|5154_1  [L=230]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (230 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        54  (0.0131643); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.15s 00:00:00.36 Elapsed: 00:00:00.61
# Mc/sec: 497.66
//
Query:       MMETSP1137-20121227|5155_1  [L=611]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (611 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       126  (0.0307167); expected 82.0 (0.02)
Passed bias filter:                      101  (0.0246221); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.19s 00:00:00.60 Elapsed: 00:00:00.59
# Mc/sec: 1366.87
//
Query:       MMETSP1137-20121227|5156_1  [L=199]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (199 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.17s 00:00:00.34 Elapsed: 00:00:00.28
# Mc/sec: 905.72
//
Query:       MMETSP1137-20121227|5157_1  [L=691]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.42    7.5   6.4       0.56    7.1   4.5    1.1  1  TIGR01628 PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family
        0.5    5.5   4.5        6.6    1.8   5.1    1.3  2  TIGR03839 termin_org_P1: adhesin P1


Domain annotation for each model (and alignments):
>> TIGR01628  PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   4.5   0.00027      0.56     404     452 ..     382     429 ..     346     509 .. 0.63

  Alignments for each domain:
  == domain 1    score: 7.1 bits;  conditional E-value: 0.00027
   TIGR01628 404 aqqqavvtqavkqqlasqplnfkinqmmlstqnpskpeapnalaqlaqq 452
                 +qqq+ ++q+++ ql++q++  + +q++ ++q++++ +a+ a a+ a+ 
  MMETSP1137-20121227|5157_1 382 QQQQQQQQQQQQLQLQQQQQLQQ-QQQQQQQQQQHQXSAAAAPAPAAAA 429
                 22222223333333333332222.2222223333323334444444433 PP

>> TIGR03839  termin_org_P1: adhesin P1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.3   0.0      0.21   4.3e+02    1354    1392 ..     235     274 ..     231     275 .. 0.87
   2 ?    1.8   5.1    0.0032       6.6     194     263 ..     384     452 ..     375     468 .. 0.40

  Alignments for each domain:
  == domain 1    score: -4.3 bits;  conditional E-value: 0.21
   TIGR03839 1354 ql.pdyvLPlaitvPivvivLsvtLGLaiGiPmhknkkaL 1392
                  q+ pdy     ++  +  i +s+ L L+ G  m+  ++ L
  MMETSP1137-20121227|5157_1  235 QWaPDYSWTFSVSFSVATISFSLLLELTAGPGMSAARREL 274 
                  55479*************************9999988765 PP

  == domain 2    score: 1.8 bits;  conditional E-value: 0.0032
   TIGR03839 194 qlqrglqkqkteskatessfgatfrlkvksavadaaksgekl......aeatassassGsassaarggasadtkak 263
                 q q++ q+q+++        +  ++l++++ ++   ++ + +        a+a +a++G++  a  g  sa + a 
  MMETSP1137-20121227|5157_1 384 QQQQQQQQQQLQL-------QQQQQLQQQQQQQQQQQQHQXSaaaapaPAAAAGAAGAGAGAGAGAGAVSAAATAA 452
                 2223333333333.......33444444444444444444441000001222222333333332233333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (691 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       479  (0.116772); expected 82.0 (0.02)
Passed bias filter:                      199  (0.0485129); expected 82.0 (0.02)
Passed Vit filter:                        33  (0.00804486); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.66u 0.18s 00:00:00.84 Elapsed: 00:00:00.61
# Mc/sec: 1495.16
//
Query:       MMETSP1137-20121227|5158_1  [L=533]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (533 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       100  (0.0243784); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.16s 00:00:00.55 Elapsed: 00:00:00.87
# Mc/sec: 808.62
//
Query:       MMETSP1137-20121227|5159_1  [L=293]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (293 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        66  (0.0160897); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.17s 00:00:00.38 Elapsed: 00:00:00.45
# Mc/sec: 859.40
//
Query:       MMETSP1137-20121227|5160_1  [L=207]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (207 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       239  (0.0582643); expected 82.0 (0.02)
Passed bias filter:                      120  (0.029254); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.17s 00:00:00.39 Elapsed: 00:00:00.41
# Mc/sec: 666.38
//
Query:       MMETSP1137-20121227|5161_1  [L=373]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (373 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        73  (0.0177962); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.14s 00:00:00.41 Elapsed: 00:00:00.46
# Mc/sec: 1070.26
//
Query:       MMETSP1137-20121227|5162_1  [L=463]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (463 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       127  (0.0309605); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.13s 00:00:00.44 Elapsed: 00:00:00.48
# Mc/sec: 1273.14
//
Query:       MMETSP1137-20121227|5163_1  [L=1014]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1014 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       184  (0.0448562); expected 82.0 (0.02)
Passed bias filter:                      102  (0.0248659); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.71u 0.17s 00:00:00.88 Elapsed: 00:00:00.53
# Mc/sec: 2525.23
//
Query:       MMETSP1137-20121227|5164_1  [L=529]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.013   12.0   1.1      0.018   11.6   0.7    1.1  1  TIGR03145 cyt_nit_nrfE: cytochrome c nitrate reductase biogenesis protein NrfE


Domain annotation for each model (and alignments):
>> TIGR03145  cyt_nit_nrfE: cytochrome c nitrate reductase biogenesis protein NrfE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.7   4.4e-06     0.018     327     419 ..     423     516 ..     406     528 .. 0.84

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 4.4e-06
   TIGR03145 327 tlfalkanllesavrfgllskeallllanvlltvatvsvllGtfyPlifealnlGsisvGaPyfnsifvPlal.lllllmvlvlllkwkklakk 419
                  l   + +++e+ v f+l s  + ll + vl t+a++  ++G+f   +f+     s+ v   y n  ++ l++ l l+ m+   +l w  ++++
  MMETSP1137-20121227|5164_1 423 ELTECQIESTEKFVSFRLDSARNRLLQVDVLATIASAIFAFGAFTLAVFSVNLPTSLFVDPQYANGWLFELVVgLTLSCMISCFALLWFYFSSR 516
                 5555677888999************************************999999**********98888776366888998888888776665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (529 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       266  (0.0648464); expected 82.0 (0.02)
Passed bias filter:                      183  (0.0446124); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.12s 00:00:00.55 Elapsed: 00:00:00.55
# Mc/sec: 1269.50
//
Query:       MMETSP1137-20121227|5165_1  [L=247]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.5e-73  244.1   0.0      3e-73  243.8   0.0    1.1  1  TIGR01351 adk: adenylate kinases
    6.3e-40  134.7   0.1      9e-30  101.6   0.0    2.1  2  TIGR01360 aden_kin_iso1: adenylate kinase
    1.2e-33  114.5   0.0    1.4e-22   78.3   0.0    2.1  2  TIGR01359 UMP_CMP_kin_fam: UMP-CMP kinase family
    0.00017   19.5   0.1     0.0003   18.7   0.0    1.4  1  TIGR02173 cyt_kin_arch: putative cytidylate kinase
  ------ inclusion threshold ------
      0.018   11.4   0.0      0.026   10.9   0.0    1.2  1  TIGR03922 T7SS_EccA: type VII secretion AAA-ATPase EccA
       0.03   11.2   0.0      0.042   10.7   0.0    1.2  1  TIGR00635 ruvB: Holliday junction DNA helicase RuvB
      0.031   11.8   0.0      0.049   11.1   0.0    1.3  1  TIGR00017 cmk: cytidylate kinase
      0.035   11.7   0.1      0.068   10.7   0.0    1.5  1  TIGR01313 therm_gnt_kin: carbohydrate kinase, thermoresistant glucokinase family
      0.036   10.4   0.1      0.053    9.8   0.1    1.1  1  TIGR00602 rad24: checkpoint protein rad24
      0.045   11.2   0.0        1.7    6.1   0.0    2.2  2  TIGR03263 guanyl_kin: guanylate kinase


Domain annotation for each model (and alignments):
>> TIGR01351  adk: adenylate kinases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  243.8   0.0   7.3e-76     3e-73       1     208 [.      33     241 ..      33     245 .. 0.96

  Alignments for each domain:
  == domain 1    score: 243.8 bits;  conditional E-value: 7.3e-76
   TIGR01351   1 rlvllGpPGsGKGTqakrlaeklglvhistGdllRaevkkktelgkkakeylekGklvpdeiviklvkerleeeedeekgfiLDGfPRtleQaeaLdelleelgl.kldavielkvpdevlverisgRricpkcgkvynlkfkkpkv.ecddctaellkqReDDteevvkkRlevYkeqteplieyYkkkgklveidaekkieevlkeil 208
                 +++l+GpPG+GKGTqa  ++ek+gl+h++tGdllRa+v+++t +gkkak+++e+G lv+deiv  ++k+++ +  ++++g iLDGfPRt+ Qae Lde+l++ g+ k+d vie+kvpdevlveri+gR+++ ++g++y+ kf++pkv   dd+t+e l++R+DD+ee++kkRl+++++qt+p+++yY+k+g +  i++++k e v + i 
  MMETSP1137-20121227|5165_1  33 NIILVGPPGCGKGTQAPVIKEKFGLCHLATGDLLRAAVAAGTDMGKKAKAVMESGGLVSDEIVXGIIKDNIGA-PECSNGXILDGFPRTVPQAEKLDEMLTSEGVgKIDSVIEFKVPDEVLVERICGRMVHAASGRSYHEKFAPPKVpGLDDETGEPLMKRKDDNEEALKKRLSQFHAQTKPVVDYYAKQGLYSPINGDQKSETVKAIIA 241
                 58*********************************************************************99.88************************9887658*****************************************99************************************************999998876655 PP

>> TIGR01360  aden_kin_iso1: adenylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  101.6   0.0   2.2e-32     9e-30       5     129 ..      33     161 ..      30     172 .. 0.88
   2 !   31.3   0.0   7.9e-11   3.3e-08     132     187 ..     191     246 ..     185     247 .] 0.93

  Alignments for each domain:
  == domain 1    score: 101.6 bits;  conditional E-value: 2.2e-32
   TIGR01360   5 iifivGGpGsGkGtqcekivekyGfthlssGdllreevasgsergkklqaimekGelvpldvvldllkeallkalekskGflidGyprevkqGeefekr.....iaeaklvlyldvsedtlvkrllkrae 129
                  i +vG pG+GkGtq   i ek+G+ hl++Gdllr+ va+g++ gkk +a+me+G+lv+ ++v  ++k+ +  a e s+G ++dG+pr v q e++++      +++ + v+ ++v ++ lv+r+  r  
  MMETSP1137-20121227|5165_1  33 NIILVGPPGCGKGTQAPVIKEKFGLCHLATGDLLRAAVAAGTDMGKKAKAVMESGGLVSDEIVXGIIKDNIG-APECSNGXILDGFPRTVPQAEKLDEMltsegVGKIDSVIEFKVPDEVLVERICGRMV 161
                 57799****************************************************************985.6789******************987611122566788***************98853 PP

  == domain 2    score: 31.3 bits;  conditional E-value: 7.9e-11
   TIGR01360 132 arvddnektikkrletykkatepvieyyeskgkllkinaegtvddvflevvaaldk 187
                  r+ddne+++kkrl  ++ +t+pv++yy  +g    in +++ + v + +   ldk
  MMETSP1137-20121227|5165_1 191 KRKDDNEEALKKRLSQFHAQTKPVVDYYAKQGLYSPINGDQKSETVKAIIAGILDK 246
                 589*****************************************999998888887 PP

>> TIGR01359  UMP_CMP_kin_fam: UMP-CMP kinase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.3   0.0   3.4e-25   1.4e-22       4     133 ..      36     168 ..      34     173 .. 0.91
   2 !   34.1   0.0   1.2e-11   5.1e-09     132     181 ..     192     241 ..     185     245 .. 0.91

  Alignments for each domain:
  == domain 1    score: 78.3 bits;  conditional E-value: 3.4e-25
   TIGR01359   4 vlGgPGsGkGtqCakiveefkfvhlsaGdllreeikregseegelieslikeGkivPsevtvellekaikeseeskkflidGfPrneenleawekli.dekv.evkfvlfldcseevmvkrllkrgqs..sGrv 133
                 ++G+PG+GkGtq   i e+f+  hl++Gdllr++++  g ++g+  + +++ G +v  e+   +++++i + e s+  ++dGfPr     e   +++ +e v ++++v+ +++++ev+v+r+  r     sGr+
  MMETSP1137-20121227|5165_1  36 LVGPPGCGKGTQAPVIKEKFGLCHLATGDLLRAAVA-AGTDMGKKAKAVMESGGLVSDEIVXGIIKDNIGAPECSNGXILDGFPRTVPQAEKLDEMLtSEGVgKIDSVIEFKVPDEVLVERICGRMVHaaSGRS 168
                 68**********************************.9***********************************9************999999988764444438999******************764448986 PP

  == domain 2    score: 34.1 bits;  conditional E-value: 1.2e-11
   TIGR01359 132 rvddnieslkkrletykeetlpvieyfekknkvkkidaeksveevfeeve 181
                 r+ddn+e+lkkrl++++ +t pv++y+ k++    i+++++ e+v + + 
  MMETSP1137-20121227|5165_1 192 RKDDNEEALKKRLSQFHAQTKPVVDYYAKQGLYSPINGDQKSETVKAIIA 241
                 99**************************************9999876665 PP

>> TIGR02173  cyt_kin_arch: putative cytidylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.0   7.4e-07    0.0003       3      50 ..      34      81 ..      32      92 .. 0.88

  Alignments for each domain:
  == domain 1    score: 18.7 bits;  conditional E-value: 7.4e-07
   TIGR02173  3 ivisGpPGsGkttvakilaeklslklisaGkirelaekkgldlaeskk 50
                i++ GpPG Gk t a ++ ek++l ++++G++   a   g d+ ++ k
  MMETSP1137-20121227|5165_1 34 IILVGPPGCGKGTQAPVIKEKFGLCHLATGDLLRAAVAAGTDMGKKAK 81
                8899***************************99999888888865554 PP

>> TIGR03922  T7SS_EccA: type VII secretion AAA-ATPase EccA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   6.3e-05     0.026     313     336 ..      32      55 ..       7      69 .. 0.81

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 6.3e-05
   TIGR03922 313 kHlllaGPPGtGkttiArvvakiy 336
                 k ++l+GPPG Gk t A v+ + +
  MMETSP1137-20121227|5165_1  32 KNIILVGPPGCGKGTQAPVIKEKF 55 
                 5699*************9987654 PP

>> TIGR00635  ruvB: Holliday junction DNA helicase RuvB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0    0.0001     0.042      31      55 ..      32      56 ..      16      84 .. 0.84

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 0.0001
   TIGR00635 31 dhvllyGPPGlGkttlakiiakelg 55
                  ++l+GPPG Gk t a +i +++g
  MMETSP1137-20121227|5165_1 32 KNIILVGPPGCGKGTQAPVIKEKFG 56
                5699***************988776 PP

>> TIGR00017  cmk: cytidylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00012     0.049       5      40 ..      34      69 ..      31      86 .. 0.88

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 0.00012
   TIGR00017  5 iaiDGPsaaGKstvakalaeklgykyldsGalYRvl 40
                i + GP + GK+t a  + ek g+ +l +G l R+ 
  MMETSP1137-20121227|5165_1 34 IILVGPPGCGKGTQAPVIKEKFGLCHLATGDLLRAA 69
                5667******************************85 PP

>> TIGR01313  therm_gnt_kin: carbohydrate kinase, thermoresistant glucokinase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   0.00017     0.068       1      34 [.      34      68 ..      34      78 .. 0.89

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 0.00017
   TIGR01313  1 lvlmGvaGsGkstiakelakklg.akfieGDdlhp 34
                ++l+G+ G+Gk t a  + +k+g ++ + GD l +
  MMETSP1137-20121227|5165_1 34 IILVGPPGCGKGTQAPVIKEKFGlCHLATGDLLRA 68
                699********************889999998865 PP

>> TIGR00602  rad24: checkpoint protein rad24
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.1   0.00013     0.053     105     129 ..      26      50 ..      17      58 .. 0.78

  Alignments for each domain:
  == domain 1    score: 9.8 bits;  conditional E-value: 0.00013
   TIGR00602 105 LeskkkriLLitGPsGCgKsTviki 129
                 Le  +++ +++ GP+GCgK T   +
  MMETSP1137-20121227|5165_1  26 LEAPPRKNIILVGPPGCGKGTQAPV 50 
                 777778878889********97554 PP

>> TIGR03263  guanyl_kin: guanylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.0     0.037        15       4      18 ..      34      48 ..      31      62 .. 0.81
   2 ?    6.1   0.0    0.0042       1.7     128     153 ..     187     212 ..     173     234 .. 0.83

  Alignments for each domain:
  == domain 1    score: 3.0 bits;  conditional E-value: 0.037
   TIGR03263  4 ivisgpsGvGKstlv 18
                i+++gp G+GK+t +
  MMETSP1137-20121227|5165_1 34 IILVGPPGCGKGTQA 48
                89**********955 PP

  == domain 2    score: 6.1 bits;  conditional E-value: 0.0042
   TIGR03263 128 eRlkkRgtdseeviekRlekAkkelk 153
                 e l kR++d+ee+++kRl++ +++ k
  MMETSP1137-20121227|5165_1 187 EPLMKRKDDNEEALKKRLSQFHAQTK 212
                 5699**************99777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (247 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       185  (0.0451); expected 82.0 (0.02)
Passed bias filter:                      177  (0.0431497); expected 82.0 (0.02)
Passed Vit filter:                        48  (0.0117016); expected 4.1 (0.001)
Passed Fwd filter:                        10  (0.00243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.30u 0.17s 00:00:00.47 Elapsed: 00:00:00.40
# Mc/sec: 815.03
//
Query:       MMETSP1137-20121227|5166_1  [L=630]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.2e-14   52.0   0.1      2e-08   31.5   0.0    2.9  3  TIGR04046 MSMEG_0569_nitr: flavin-dependent oxidoreductase, MSMEG_0569 family
    3.8e-08   30.7   0.7    4.4e-07   27.2   0.2    2.1  2  TIGR00292 TIGR00292: thiazole biosynthesis enzyme
    1.8e-07   28.1   0.3    2.6e-07   27.5   0.2    1.2  1  TIGR02734 crtI_fam: phytoene desaturase
    4.5e-07   27.3   0.4    7.3e-07   26.7   0.3    1.3  1  TIGR03467 HpnE: squalene-associated FAD-dependent desaturase
    5.4e-07   25.2   0.3    2.4e-06   23.1   0.1    1.8  2  TIGR03315 Se_ygfK: putative selenate reductase, YgfK subunit
    1.6e-06   25.0   1.7      0.002   14.8   0.1    2.5  3  TIGR01292 TRX_reduct: thioredoxin-disulfide reductase
    1.8e-06   24.4   0.1    1.5e-05   21.4   0.1    2.0  2  TIGR03997 mycofact_OYE_2: mycofactocin system FadH/OYE family oxidoreductase 2
    2.1e-06   24.6   0.0     0.0012   15.6   0.0    2.6  3  TIGR04018 Bthiol_YpdA: putative bacillithiol system oxidoreductase, YpdA family
      3e-06   24.0   0.3    4.4e-06   23.4   0.2    1.2  1  TIGR02733 desat_CrtD: C-3',4' desaturase CrtD
      4e-06   23.7   0.1    0.00014   18.6   0.0    2.1  2  TIGR01316 gltA: glutamate synthase (NADPH), homotetrameric
    4.7e-06   23.5   0.3    1.5e-05   21.9   0.1    1.8  2  TIGR01317 GOGAT_sm_gam: glutamate synthase, NADH/NADPH, small subunit
    1.6e-05   21.8   1.9    1.6e-05   21.8   1.3    1.5  1  TIGR00275 TIGR00275: flavoprotein, HI0933 family
    1.6e-05   20.7   0.2    2.7e-05   19.9   0.1    1.3  1  TIGR01372 soxA: sarcosine oxidase, alpha subunit family
    5.3e-05   19.9   0.1    7.4e-05   19.5   0.1    1.1  1  TIGR02731 phytoene_desat: phytoene desaturase
    7.6e-05   19.3   0.3      0.001   15.5   0.1    2.1  2  TIGR01318 gltD_gamma_fam: glutamate synthase, small subunit
    0.00012   19.8   1.6    0.00012   19.8   1.1    1.7  2  TIGR02032 GG-red-SF: geranylgeranyl reductase family
    0.00019   17.9   0.1    0.00034   17.1   0.1    1.3  1  TIGR00562 proto_IX_ox: protoporphyrinogen oxidase
    0.00021   18.0   2.0    0.00036   17.2   1.4    1.3  1  TIGR01350 lipoamide_DH: dihydrolipoyl dehydrogenase
    0.00038   17.4   1.8    0.00084   16.3   1.1    1.6  2  TIGR03197 MnmC_Cterm: tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain
     0.0005   16.9   0.0    0.00097   16.0   0.0    1.4  1  TIGR00031 UDP-GALP_mutase: UDP-galactopyranose mutase
    0.00072   16.2   1.6     0.0013   15.4   1.1    1.3  1  TIGR01813 flavo_cyto_c: flavocytochrome c
      0.001   15.5   0.0     0.0018   14.7   0.0    1.3  1  TIGR03996 mycofact_OYE_1: mycofactocin system FadH/OYE family oxidoreductase 1
     0.0016   15.3   0.1       0.13    9.0   0.1    2.2  2  TIGR02053 MerA: mercuric reductase
     0.0021   14.4   0.3       0.15    8.2   0.0    2.3  3  TIGR02374 nitri_red_nirB: nitrite reductase [NAD(P)H], large subunit
     0.0056   13.5   0.1     0.0094   12.8   0.0    1.3  1  TIGR02023 BchP-ChlP: geranylgeranyl reductase
     0.0058   13.3   0.0       0.11    9.0   0.0    2.5  3  TIGR03385 CoA_CoA_reduc: CoA-disulfide reductase
     0.0064   12.9   1.7       0.14    8.4   0.1    2.1  2  TIGR03140 AhpF: alkyl hydroperoxide reductase, F subunit
     0.0087   12.7   0.4       0.21    8.2   0.1    2.1  2  TIGR02730 carot_isom: carotene isomerase
  ------ inclusion threshold ------
      0.011   12.1   0.3      0.021   11.2   0.2    1.4  1  TIGR01424 gluta_reduc_2: glutathione-disulfide reductase
      0.013   12.2   0.0      0.032   10.9   0.0    1.6  2  TIGR01988 Ubi-OHases: ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family
      0.018   11.8   0.1      0.031   11.1   0.1    1.2  1  TIGR03378 glycerol3P_GlpB: glycerol-3-phosphate dehydrogenase, anaerobic, B subunit
      0.019   11.6   0.1      0.032   10.9   0.0    1.3  1  TIGR02360 pbenz_hydroxyl: 4-hydroxybenzoate 3-monooxygenase
       0.02   11.6   0.1      0.036   10.8   0.1    1.3  1  TIGR02732 zeta_caro_desat: carotene 7,8-desaturase
      0.022   11.8   0.7      0.037   11.1   0.5    1.3  1  TIGR00745 apbA_panE: 2-dehydropantoate 2-reductase
      0.023   11.6   3.9      0.011   12.7   1.0    1.6  1  TIGR02352 thiamin_ThiO: glycine oxidase ThiO
      0.031   11.2   1.1       0.12    9.3   0.0    2.3  3  TIGR01790 carotene-cycl: lycopene cyclase family protein
      0.034   11.0   1.5      0.056   10.3   1.0    1.3  1  TIGR03364 HpnW_proposed: FAD dependent oxidoreductase TIGR03364
      0.045   10.3   0.2      0.065    9.8   0.1    1.1  1  TIGR03026 NDP-sugDHase: nucleotide sugar dehydrogenase
       0.05   10.2   0.0       0.15    8.7   0.0    1.7  2  TIGR01984 UbiH: 2-polyprenyl-6-methoxyphenol 4-hydroxylase
      0.061    9.7   1.2      0.066    9.6   0.1    1.5  2  TIGR03143 AhpF_homolog: putative alkyl hydroperoxide reductase F subunit


Domain annotation for each model (and alignments):
>> TIGR04046  MSMEG_0569_nitr: flavin-dependent oxidoreductase, MSMEG_0569 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.5   0.0   1.9e-10     2e-08       2     125 ..      25     154 ..      24     168 .. 0.86
   2 !   16.2   0.0   8.6e-06   0.00088     116     177 ..     201     262 ..     186     277 .. 0.89
   3 ?    0.2   0.0      0.62        63     218     347 ..     388     430 ..     359     446 .. 0.62

  Alignments for each domain:
  == domain 1    score: 31.5 bits;  conditional E-value: 1.9e-10
   TIGR04046   2 pvviiGaGqaGlsvsyllkkkgvdhvvlekkt.vahswkderwdsfclvtPnwqcrlPgypy...dGedPdGfmkkdeivayleeyaesvdap..vregveveklkkaeaggfavetsageltadqvvva 125
                 +v +iGaG +Gl  + +lk++g +  ++e+ + ++  ++++ +d   lv+  +  ++ +      d + P+  ++  e v+yl+ey ++++ +  +r g++v ++++++ gg++ve ++++ + d vv +
  MMETSP1137-20121227|5166_1  25 SVCVIGAGASGLVAAKYLKEAGYKVTIVEQAQaIGGVFDSRTYDDARLVSSTYLTAFSDLRMgpdDKPHPKPHVSAVEYVEYLREYCRRFELErlMRLGTRVLRVERRSDGGYHVEVATQAGEQDGVVQS 154
                 699**************************9884677888888************9999998733355569999***************99865338899*****************99999988888765 PP

  == domain 2    score: 16.2 bits;  conditional E-value: 8.6e-06
   TIGR04046 116 eltadqvvvatggyhtpaipklaerlpadvkqlhseeyrnaeqlpdGavlvvGsGqsGaqia 177
                  l+ d+v + +g +++p +p++  +   + + lhs++y++ + + d   lv+G G sG  ia
  MMETSP1137-20121227|5166_1 201 ILEFDAVCICCGVHEVPYVPHIDGAETFTGHALHSSSYKDKSVFRDKRALVLGCGESGMDIA 262
                 466799****************99999999******************************98 PP

  == domain 3    score: 0.2 bits;  conditional E-value: 0.62
   TIGR04046 218 ltveehpekeevrektnhyvtGrdgGrdidlrkfaleGmelyGrledikeeklrfapdlkenldkadavyerikasidkyiakngieapkesvyePvwePeeekteldlkaaeitsviwaiGfkadyswv 347
                  +++++p  ++++                                                                                        + +t +d ++ ++ ++++a+G+++ + ++
  MMETSP1137-20121227|5166_1 388 KSITSFPAPAKIQG---------------------------------------------------------------------------------------DTVTFVDGRQMQVDVLVYATGYRQCFPFL 430
                 33444444444444.......................................................................................44455555666666666666666666655 PP

>> TIGR00292  TIGR00292: thiazole biosynthesis enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.2   0.2   4.2e-09   4.4e-07      23      58 ..      25      60 ..      17      64 .. 0.93
   2 ?    1.4   0.0      0.33        34       4      43 ..     229     268 ..     226     292 .. 0.80

  Alignments for each domain:
  == domain 1    score: 27.2 bits;  conditional E-value: 4.2e-09
   TIGR00292 23 DviivGaGpsGLtaayylakeglkvvvlerklaiGG 58
                 v ++GaG+sGL aa+yl ++g+kv ++e+  aiGG
  MMETSP1137-20121227|5166_1 25 SVCVIGAGASGLVAAKYLKEAGYKVTIVEQAQAIGG 60
                699********************************9 PP

  == domain 2    score: 1.4 bits;  conditional E-value: 0.33
   TIGR00292   4 vsraiveayfedlldyaesDviivGaGpsGLtaayylake 43 
                 + +a+ +++++d   + +   ++ G G sG+  ay   +e
  MMETSP1137-20121227|5166_1 229 TGHALHSSSYKDKSVFRDKRALVLGCGESGMDIAYRAVQE 268
                 56789999999999999999************99976665 PP

>> TIGR02734  crtI_fam: phytoene desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.5   0.2   2.6e-09   2.6e-07       1      35 [.      26      60 ..      26      68 .. 0.94

  Alignments for each domain:
  == domain 1    score: 27.5 bits;  conditional E-value: 2.6e-09
   TIGR02734  1 avViGaGlgGLAlAirLaaaGievtvlekrdkpGG 35
                ++ViGaG++GL +A  L+ aG++vt++e+ +++GG
  MMETSP1137-20121227|5166_1 26 VCVIGAGASGLVAAKYLKEAGYKVTIVEQAQAIGG 60
                68********************************9 PP

>> TIGR03467  HpnE: squalene-associated FAD-dependent desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.7   0.3   7.1e-09   7.3e-07       1      41 [.      26      66 ..      26      74 .. 0.89

  Alignments for each domain:
  == domain 1    score: 26.7 bits;  conditional E-value: 7.1e-09
   TIGR03467  1 vvvvGgGlAGLaAAveLaraGvrvtllEarrqlGGRarsfe 41
                v v+G+G +GL AA  L +aG++vt++E ++++GG   s +
  MMETSP1137-20121227|5166_1 26 VCVIGAGASGLVAAKYLKEAGYKVTIVEQAQAIGGVFDSRT 66
                78*********************************877755 PP

>> TIGR03315  Se_ygfK: putative selenate reductase, YgfK subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.1   0.1   2.4e-08   2.4e-06     535     577 ..      21      63 ..      11      74 .. 0.90
   2 ?   -0.5   0.0       0.3        31     621     687 ..     203     267 ..     190     278 .. 0.63

  Alignments for each domain:
  == domain 1    score: 23.1 bits;  conditional E-value: 2.4e-08
   TIGR03315 535 sekhkvaviGaGPaGlsagyflaraGlpvtvfekkekagGvvk 577
                 ++ + v viGaG +Gl a+ +l+ aG +vt++e+ + +gGv +
  MMETSP1137-20121227|5166_1  21 EDVRSVCVIGAGASGLVAAKYLKEAGYKVTIVEQAQAIGGVFD 63 
                 66778***********************************975 PP

  == domain 2    score: -0.5 bits;  conditional E-value: 0.3
   TIGR03315 621 gykyvvlaiGadkssklklkegnervlksleflkefkedktklklGkrvvvvGgGntamdaaraalr 687
                 +++ v+++ G ++   +   +g+e          ++k++  ++   kr  v+G+G+  md a  a++
  MMETSP1137-20121227|5166_1 203 EFDAVCICCGVHEVPYVPHIDGAETFTGHALHSSSYKDK--SVFRDKRALVLGCGESGMDIAYRAVQ 267
                 566666666666665555544444433333333344443..55667999999********9976665 PP

>> TIGR01292  TRX_reduct: thioredoxin-disulfide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.1     2e-05     0.002       3      38 ..      26      61 ..      24      69 .. 0.87
   2 ?   -3.1   0.0       5.5   5.6e+02      53      87 ..      97     134 ..      92     154 .. 0.72
   3 !    8.7   0.1    0.0014      0.14      97     158 ..     200     263 ..     186     281 .. 0.81

  Alignments for each domain:
  == domain 1    score: 14.8 bits;  conditional E-value: 2e-05
   TIGR01292  3 viiiGaGpaGltaaiYaaranlktlliegkeaggql 38
                v +iGaG++Gl aa Y + a++k+ ++e+++a g +
  MMETSP1137-20121227|5166_1 26 VCVIGAGASGLVAAKYLKEAGYKVTIVEQAQAIGGV 61
                889************************999987766 PP

  == domain 2    score: -3.1 bits;  conditional E-value: 5.5
   TIGR01292  53 gisgselmekmkeqakkfgaeiil...eevkkvdkker 87 
                 ++s+ e++e ++e + +f+ e ++   ++v +v+++++
  MMETSP1137-20121227|5166_1  97 HVSAVEYVEYLREYCRRFELERLMrlgTRVLRVERRSD 134
                 57889999999999999999988744456666666554 PP

  == domain 3    score: 8.7 bits;  conditional E-value: 0.0014
   TIGR01292  97 keykakaviiAtGakar..klgikgeeeflgrGvsyCavCDgalfknkevavvGggdsAveeal 158
                 +  + +av i+ G ++     +i g e+f+g+ + + +  D ++f++k+ +v+G g+s ++ a 
  MMETSP1137-20121227|5166_1 200 SILEFDAVCICCGVHEVpyVPHIDGAETFTGHALHSSSYKDKSVFRDKRALVLGCGESGMDIAY 263
                 566778899999987651145899*********************************9887665 PP

>> TIGR03997  mycofact_OYE_2: mycofactocin system FadH/OYE family oxidoreductase 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   0.1   1.4e-07   1.5e-05     375     417 ..      19      61 ..      11      69 .. 0.89
   2 ?    0.2   0.0      0.38        39     376     401 ..     242     268 ..     226     278 .. 0.78

  Alignments for each domain:
  == domain 1    score: 21.4 bits;  conditional E-value: 1.4e-07
   TIGR03997 375 karrrkkvlvvGgGPaGleaaataarrGhrvtllereeelGGq 417
                 +a+  + v+v+G+G +Gl aa+   + G++vt++e+++++GG 
  MMETSP1137-20121227|5166_1  19 PAEDVRSVCVIGAGASGLVAAKYLKEAGYKVTIVEQAQAIGGV 61 
                 455569***********************************96 PP

  == domain 2    score: 0.2 bits;  conditional E-value: 0.38
   TIGR03997 376 arrr.kkvlvvGgGPaGleaaataarr 401
                 + +r k+ lv+G G +G+  a  a + 
  MMETSP1137-20121227|5166_1 242 SVFRdKRALVLGCGESGMDIAYRAVQE 268
                 444449**************9999775 PP

>> TIGR04018  Bthiol_YpdA: putative bacillithiol system oxidoreductase, YpdA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   1.1e-05    0.0012       2     113 ..      26     147 ..      25     155 .. 0.75
   2 !    6.1   0.0     0.009      0.93     112     184 ..     202     278 ..     188     288 .. 0.83
   3 ?   -3.0   0.0       5.1   5.2e+02     222     256 ..     402     432 ..     396     438 .. 0.71

  Alignments for each domain:
  == domain 1    score: 15.6 bits;  conditional E-value: 1.1e-05
   TIGR04018   2 viiiGaGPiGlaaaieakkaglsyliiekgalvnsiykyPtn..mtffstsekleigeiPf...isenekpt..rkealeYYrrvaekkkln..iklyeevekvkkke.ekfevktekeeye 113
                 v++iGaG  Gl aa  +k+ag++++i+e+ + +  ++   t+   ++ s++      ++ +      ++kp+    e +eY r+ +++++l+  ++l ++v +v++++ ++++v+  +++ e
  MMETSP1137-20121227|5166_1  26 VCVIGAGASGLVAAKYLKEAGYKVTIVEQAQAIGGVFDSRTYddARLVSSTYLTAFSDLRMgpdDKPHPKPHvsAVEYVEYLREYCRRFELErlMRLGTRVLRVERRSdGGYHVEVATQAGE 147
                 79******************************99999765542256677766666666644100344455541156889999*******9986678999*****998867999988666554 PP

  == domain 2    score: 6.1 bits;  conditional E-value: 0.009
   TIGR04018 112 yeakkvvvatGyydipnllnvpGedl..pkvsh..yykeahpyvkqkvvvvGgknsavdaalelyrkgaevtlvvrg 184
                 +e  +v +  G++++p   ++ G +    +  h   yk+   + +++ +v+G  +s +d a   +++ +e ++ +r+
  MMETSP1137-20121227|5166_1 202 LEFDAVCICCGVHEVPYVPHIDGAETftGHALHssSYKDKSVFRDKRALVLGCGESGMDIAYRAVQEASEAAISIRN 278
                 5667899999*************9963346666336*************************9999999888887776 PP

  == domain 3    score: -3.0 bits;  conditional E-value: 5.1
   TIGR04018 222 esvtletpegeveeiendfvlaltGyrpdlellek 256
                 ++vt+ +  g++  ++ d ++  tGyr  + +l+k
  MMETSP1137-20121227|5166_1 402 DTVTFVD--GRQ--MQVDVLVYATGYRQCFPFLKK 432
                 5555544..444..778888888999988888875 PP

>> TIGR02733  desat_CrtD: C-3',4' desaturase CrtD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.4   0.2   4.3e-08   4.4e-06       3      39 ..      25      61 ..      23      68 .. 0.93

  Alignments for each domain:
  == domain 1    score: 23.4 bits;  conditional E-value: 4.3e-08
   TIGR02733  3 svvviGaGiaGltaaallakrGlevtlleaaaqvGGC 39
                sv viGaG +Gl aa  l + G++vt++e+a+ +GG 
  MMETSP1137-20121227|5166_1 25 SVCVIGAGASGLVAAKYLKEAGYKVTIVEQAQAIGGV 61
                89*********************************96 PP

>> TIGR01316  gltA: glutamate synthase (NADPH), homotetrameric
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.0   1.4e-06   0.00014     134     173 ..      24      63 ..      12      85 .. 0.86
   2 ?    2.7   0.0     0.092       9.4     264     304 ..     238     278 ..     231     282 .. 0.87

  Alignments for each domain:
  == domain 1    score: 18.6 bits;  conditional E-value: 1.4e-06
   TIGR01316 134 kkvaviGaGpaGlavaselakkGhevtvfealhkpGGvla 173
                   v viGaG +Gl  a+ l  +G++vt+ e  +  GGv+ 
  MMETSP1137-20121227|5166_1  24 RSVCVIGAGASGLVAAKYLKEAGYKVTIVEQAQAIGGVFD 63 
                 4699*********************************974 PP

  == domain 2    score: 2.7 bits;  conditional E-value: 0.092
   TIGR01316 264 kkdtpvevgkkvvviGgGntavdaartalrlGaevhvvyrr 304
                  kd  v   k+ +v+G+G   +d a  a +   e  +  r 
  MMETSP1137-20121227|5166_1 238 YKDKSVFRDKRALVLGCGESGMDIAYRAVQEASEAAISIRN 278
                 578889999*******************9999998888776 PP

>> TIGR01317  GOGAT_sm_gam: glutamate synthase, NADH/NADPH, small subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.9   0.1   1.4e-07   1.5e-05     144     182 ..      24      62 ..      17      67 .. 0.93
   2 ?   -1.8   0.0       2.2   2.2e+02     275     305 ..     240     268 ..     222     277 .. 0.74

  Alignments for each domain:
  == domain 1    score: 21.9 bits;  conditional E-value: 1.4e-07
   TIGR01317 144 kkvavvGsGPaGlaaadqlnraGhtvtvferedrvGGll 182
                 + v+v+G+G +Gl aa+ l++aG++vt+ e++  +GG++
  MMETSP1137-20121227|5166_1  24 RSVCVIGAGASGLVAAKYLKEAGYKVTIVEQAQAIGGVF 62 
                 579**********************************85 PP

  == domain 2    score: -1.8 bits;  conditional E-value: 2.2
   TIGR01317 275 dkekikakgkkvvviGGGdtGadcvgtslrh 305
                 d  k   ++k+ +v+G G++G d    ++++
  MMETSP1137-20121227|5166_1 240 D--KSVFRDKRALVLGCGESGMDIAYRAVQE 268
                 3..55568999***********987666554 PP

>> TIGR00275  TIGR00275: flavoprotein, HI0933 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.8   1.3   1.5e-07   1.6e-05       1      34 [.      26      59 ..      26      62 .. 0.95

  Alignments for each domain:
  == domain 1    score: 21.8 bits;  conditional E-value: 1.5e-07
   TIGR00275  1 viiiGgGaaGlmaAitaaeegakVlllEknkkig 34
                v +iG+Ga+Gl+aA  ++e+g kV+++E+++ ig
  MMETSP1137-20121227|5166_1 26 VCVIGAGASGLVAAKYLKEAGYKVTIVEQAQAIG 59
                67****************************9998 PP

>> TIGR01372  soxA: sarcosine oxidase, alpha subunit family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.1   2.7e-07   2.7e-05     171     210 ..      26      65 ..      21      80 .. 0.92

  Alignments for each domain:
  == domain 1    score: 19.9 bits;  conditional E-value: 2.7e-07
   TIGR01372 171 vLvvGaGpaGLaaAraAaraGarvilvdeqaeaGGsllse 210
                 v v+GaG++GL aA+   +aG +v++v++ +++GG   s+
  MMETSP1137-20121227|5166_1  26 VCVIGAGASGLVAAKYLKEAGYKVTIVEQAQAIGGVFDSR 65 
                 88*********************************88765 PP

>> TIGR02731  phytoene_desat: phytoene desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.1   7.2e-07   7.4e-05       2      45 ..      26      69 ..      25      83 .. 0.85

  Alignments for each domain:
  == domain 1    score: 19.5 bits;  conditional E-value: 7.2e-07
   TIGR02731  2 vaiagaglaglsaakyladaghtpivleardvlggkvaawkded 45
                v++ gag +gl aakyl +ag++  ++e+++ +gg   +   +d
  MMETSP1137-20121227|5166_1 26 VCVIGAGASGLVAAKYLKEAGYKVTIVEQAQAIGGVFDSRTYDD 69
                7899*******************************877655555 PP

>> TIGR01318  gltD_gamma_fam: glutamate synthase, small subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.1     1e-05     0.001     142     180 ..      24      62 ..      17      67 .. 0.92
   2 ?    1.3   0.0      0.21        21     281     306 ..     245     270 ..     226     279 .. 0.80

  Alignments for each domain:
  == domain 1    score: 15.5 bits;  conditional E-value: 1e-05
   TIGR01318 142 krvaviGaGpaGlacadvlaraGvkvvvfdrypeiGGll 180
                 + v viGaG +Gl  a  l+ aG kv++ ++ ++iGG++
  MMETSP1137-20121227|5166_1  24 RSVCVIGAGASGLVAAKYLKEAGYKVTIVEQAQAIGGVF 62 
                 5799*********************************86 PP

  == domain 2    score: 1.3 bits;  conditional E-value: 0.21
   TIGR01318 281 eGkrvvvlGGGdtamdcvrtairlga 306
                   kr +vlG G+++md    a+++++
  MMETSP1137-20121227|5166_1 245 RDKRALVLGCGESGMDIAYRAVQEAS 270
                 569999**********9998887655 PP

>> TIGR02032  GG-red-SF: geranylgeranyl reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   1.1   1.1e-06   0.00012       3      36 ..      26      59 ..      25      62 .. 0.94
   2 ?   -3.0   0.0       9.8     1e+03       4      22 ..     250     268 ..     249     271 .. 0.86

  Alignments for each domain:
  == domain 1    score: 19.8 bits;  conditional E-value: 1.1e-06
   TIGR02032  3 vvvvGaGpaGssaAlrlakkGlrVlllekkelpr 36
                v v+GaG +G  aA +l+++G++V ++e++++++
  MMETSP1137-20121227|5166_1 26 VCVIGAGASGLVAAKYLKEAGYKVTIVEQAQAIG 59
                78***************************99876 PP

  == domain 2    score: -3.0 bits;  conditional E-value: 9.8
   TIGR02032   4 vvvGaGpaGssaAlrlakk 22 
                 +v G G +G  +A+r+ ++
  MMETSP1137-20121227|5166_1 250 LVLGCGESGMDIAYRAVQE 268
                 699***********99775 PP

>> TIGR00562  proto_IX_ox: protoporphyrinogen oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.1   3.3e-06   0.00034       3      45 ..      24      64 ..      22      72 .. 0.89

  Alignments for each domain:
  == domain 1    score: 17.1 bits;  conditional E-value: 3.3e-06
   TIGR00562  3 kkvvvvGgGisGLciayalekerpdvelvlvEakdRvGGkiyT 45
                + v v+G+G sGL +a +l+    +  +++vE+ + +GG    
  MMETSP1137-20121227|5166_1 24 RSVCVIGAGASGLVAAKYLKEA--GYKVTIVEQAQAIGGVFDS 64
                789****************999..9**************8764 PP

>> TIGR01350  lipoamide_DH: dihydrolipoyl dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   1.4   3.6e-06   0.00036       4      38 ..      26      61 ..      23      64 .. 0.93

  Alignments for each domain:
  == domain 1    score: 17.2 bits;  conditional E-value: 3.6e-06
   TIGR01350  4 vvviGgGpgGYvaAiraaqlglkvalvek.eklGGt 38
                v+viG+G +G vaA    ++g kv++ve+ + +GG+
  MMETSP1137-20121227|5166_1 26 VCVIGAGASGLVAAKYLKEAGYKVTIVEQaQAIGGV 61
                89***************************8889997 PP

>> TIGR03197  MnmC_Cterm: tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   1.1   8.2e-06   0.00084       2      35 ..      26      59 ..      25      62 .. 0.94
   2 ?   -2.5   0.0       4.3   4.4e+02     182     201 ..     404     423 ..     398     428 .. 0.86

  Alignments for each domain:
  == domain 1    score: 16.3 bits;  conditional E-value: 8.2e-06
   TIGR03197  2 vavIGaGiAgaalalsLarrGvqvtllekdekla 35
                v vIGaG +g+++a+ L+++G +vt++e++++++
  MMETSP1137-20121227|5166_1 26 VCVIGAGASGLVAAKYLKEAGYKVTIVEQAQAIG 59
                89***************************98876 PP

  == domain 2    score: -2.5 bits;  conditional E-value: 4.3
   TIGR03197 182 llsengevlaasvvVlAnga 201
                 ++  +g++++ +v+V+A+g 
  MMETSP1137-20121227|5166_1 404 VTFVDGRQMQVDVLVYATGY 423
                 567799************97 PP

>> TIGR00031  UDP-GALP_mutase: UDP-galactopyranose mutase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0   9.4e-06   0.00097       5      40 ..      27      62 ..      24      77 .. 0.86

  Alignments for each domain:
  == domain 1    score: 16.0 bits;  conditional E-value: 9.4e-06
   TIGR00031  5 iivGaGlsGivlaeilaklnkrvlvvekrnhiGGnc 40
                 ++GaG sG v a+ l++ + +v +ve+ + iGG  
  MMETSP1137-20121227|5166_1 27 CVIGAGASGLVAAKYLKEAGYKVTIVEQAQAIGGVF 62
                699******************************964 PP

>> TIGR01813  flavo_cyto_c: flavocytochrome c
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   1.1   1.2e-05    0.0013       2      37 ..      26      60 ..      25      63 .. 0.96

  Alignments for each domain:
  == domain 1    score: 15.4 bits;  conditional E-value: 1.2e-05
   TIGR01813  2 vvvvGsGlAGlsaaleakkaglaevvvleKapviGG 37
                v v+G+G+ Gl aa  +k+ag  +v ++e a++iGG
  MMETSP1137-20121227|5166_1 26 VCVIGAGASGLVAAKYLKEAG-YKVTIVEQAQAIGG 60
                89*******************.9************9 PP

>> TIGR03996  mycofact_OYE_1: mycofactocin system FadH/OYE family oxidoreductase 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0   1.7e-05    0.0018     373     412 ..      24      63 ..       8      81 .. 0.85

  Alignments for each domain:
  == domain 1    score: 14.7 bits;  conditional E-value: 1.7e-05
   TIGR03996 373 gdvlvvGGGpaGleaarvlavrGhrvtlaeasarlGGmvr 412
                  +v v+G G +Gl aa+ l  +G++vt++e++  +GG+  
  MMETSP1137-20121227|5166_1  24 RSVCVIGAGASGLVAAKYLKEAGYKVTIVEQAQAIGGVFD 63 
                 5789*********************************975 PP

>> TIGR02053  MerA: mercuric reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.0   0.1    0.0013      0.13     168     201 ..      24      57 ..      15      64 .. 0.73
   2 ?    3.9   0.0     0.046       4.7     120     199 ..     195     278 ..     181     286 .. 0.72

  Alignments for each domain:
  == domain 1    score: 9.0 bits;  conditional E-value: 0.0013
   TIGR02053 168 eslvviGggaiavElaqlfarlGsevtllqrser 201
                 +s+ viG+ga ++ +a+ ++  G +vt+++++++
  MMETSP1137-20121227|5166_1  24 RSVCVIGAGASGLVAAKYLKEAGYKVTIVEQAQA 57 
                 5677777777777777777777777777777754 PP

  == domain 2    score: 3.9 bits;  conditional E-value: 0.046
   TIGR02053 120 kvdlgkevvgakrvliAtGar..pavPeipGLkeae..yltseelleldkip.eslvviGggaiavElaqlfarlGsevtllqrs 199
                 +v+ ++ + + ++v i  G    p vP+i+G +  +  +l s++  ++     ++ +v+G g  ++++a  + +  se ++  r 
  MMETSP1137-20121227|5166_1 195 SVA-ETSILEFDAVCICCGVHevPYVPHIDGAETFTghALHSSSYKDKSVFRdKRALVLGCGESGMDIAYRAVQEASEAAISIRN 278
                 566.78889999999999975337788888877766555555555444444368999***********99888888888877766 PP

>> TIGR02374  nitri_red_nirB: nitrite reductase [NAD(P)H], large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.2   0.0    0.0014      0.15     138     174 ..      21      57 ..       8      61 .. 0.87
   2 ?   -3.7   0.0       5.9   6.1e+02      94     154 ..     201     260 ..     189     266 .. 0.64
   3 ?    3.6   0.0     0.036       3.7     216     239 ..     401     424 ..     385     428 .. 0.88

  Alignments for each domain:
  == domain 1    score: 8.2 bits;  conditional E-value: 0.0014
   TIGR02374 138 krtkkaaviGgGLLGLeaaraLknlGldvsvielapl 174
                 + ++   viG+G  GL aa+ Lk+ G +v ++e a  
  MMETSP1137-20121227|5166_1  21 EDVRSVCVIGAGASGLVAAKYLKEAGYKVTIVEQAQA 57 
                 5567789*************************99865 PP

  == domain 2    score: -3.7 bits;  conditional E-value: 5.9
   TIGR02374  94 tlsyDkLilatG..sypfilPipGaDkkgvfvyrtieDldaleaaakrtkkaaviGgGLLGLe 154
                 +l++D + +  G   +p+++ i Ga++   ++       d       r k+a v+G G  G++
  MMETSP1137-20121227|5166_1 201 ILEFDAVCICCGvhEVPYVPHIDGAETFTGHALHSSSYKD---KSVFRDKRALVLGCGESGMD 260
                 6677888888773347999999999887766655433222...33345667777777766665 PP

  == domain 3    score: 3.6 bits;  conditional E-value: 0.036
   TIGR02374 216 aerlrfkDGssleadlvvlaaGir 239
                  +++ f DG ++++d++v+a+G r
  MMETSP1137-20121227|5166_1 401 GDTVTFVDGRQMQVDVLVYATGYR 424
                 5899******************87 PP

>> TIGR02023  BchP-ChlP: geranylgeranyl reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.8   0.0   9.2e-05    0.0094       2      32 ..      25      55 ..      24      77 .. 0.91

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 9.2e-05
   TIGR02023  2 dvlviGggpsGaaaaetLakagievillere 32
                 v viG+g+sG  aa+ L++ag++v ++e++
  MMETSP1137-20121227|5166_1 25 SVCVIGAGASGLVAAKYLKEAGYKVTIVEQA 55
                599**************************98 PP

>> TIGR03385  CoA_CoA_reduc: CoA-disulfide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.0   0.0    0.0011      0.11     144     190 ..      18      63 ..      14      69 .. 0.89
   2 ?   -1.7   0.0       1.9     2e+02     104     166 ..     204     263 ..     196     276 .. 0.76
   3 ?    0.5   0.0      0.41        43     220     250 ..     402     430 ..     385     435 .. 0.81

  Alignments for each domain:
  == domain 1    score: 9.0 bits;  conditional E-value: 0.0011
   TIGR03385 144 ldkkkvekvvviGgGyiglemvealkergkevtliersekilnkllD 190
                 l +++v++v viG+G  gl  +  lke g +vt++e+++ i   ++D
  MMETSP1137-20121227|5166_1  18 LPAEDVRSVCVIGAGASGLVAAKYLKEAGYKVTIVEQAQAI-GGVFD 63 
                 567899********************************999.66666 PP

  == domain 2    score: -1.7 bits;  conditional E-value: 1.9
   TIGR03385 104 yDkLilstGAkpkileiegieldavftlrnledaeaikkyldkkkvekvvviGgGyiglemve 166
                 +D + +  G + +++ ++ i+  ++ft + l+ +++ +k +   + ++++v+G G  g++++ 
  MMETSP1137-20121227|5166_1 204 FDAVCICCGVH-EVPYVPHIDGAETFTGHALHSSSYKDKSV--FRDKRALVLGCGESGMDIAY 263
                 77777887765.45666666669999999999999999999..56678999999988888765 PP

  == domain 3    score: 0.5 bits;  conditional E-value: 0.41
   TIGR03385 220 eekvevltsgkvyqaDlvilavGvkPnseli 250
                 +   +++ +g+++q+D+++ a+G +    ++
  MMETSP1137-20121227|5166_1 402 D--TVTFVDGRQMQVDVLVYATGYRQCFPFL 430
                 3..34999***************87665555 PP

>> TIGR03140  AhpF: alkyl hydroperoxide reductase, F subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.4   0.1    0.0014      0.14     212     249 ..      23      62 ..      11      83 .. 0.74
   2 ?    3.5   0.1     0.043       4.4     327     368 ..     221     262 ..     186     266 .. 0.79

  Alignments for each domain:
  == domain 1    score: 8.4 bits;  conditional E-value: 0.0014
   TIGR03140 212 kydvlvvGgGPagaaaaiyaarkGlkvalv..aeriGGqv 249
                    v v+G+G +g  aa y    G kv++v  a+ iGG  
  MMETSP1137-20121227|5166_1  23 VRSVCVIGAGASGLVAAKYLKEAGYKVTIVeqAQAIGGVF 62 
                 5568899999999999999999999999995556788743 PP

  == domain 2    score: 3.5 bits;  conditional E-value: 0.043
   TIGR03140 327 gvpGekeylgkGvayCphCdGPlfkgkkvaviGGGnsGieaa 368
                  ++G + ++g+ +   ++ d  +f++k+  v+G G sG++ a
  MMETSP1137-20121227|5166_1 221 HIDGAETFTGHALHSSSYKDKSVFRDKRALVLGCGESGMDIA 262
                 5889999999999999999*******************9877 PP

>> TIGR02730  carot_isom: carotene isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.2   0.1     0.002      0.21       3      37 ..      26      60 ..      24      83 .. 0.86
   2 ?    2.7   0.0     0.092       9.5     180     250 ..     196     265 ..     185     277 .. 0.89

  Alignments for each domain:
  == domain 1    score: 8.2 bits;  conditional E-value: 0.002
   TIGR02730  3 aivigsgigglvtatqlaakgakvlvlekylipgg 37
                + vig+g  glv+a  l   g kv ++e+    gg
  MMETSP1137-20121227|5166_1 26 VCVIGAGASGLVAAKYLKEAGYKVTIVEQAQAIGG 60
                679*************************9776665 PP

  == domain 2    score: 2.7 bits;  conditional E-value: 0.092
   TIGR02730 180 ikdpellkfidiecfiwsvvpadltpminagmvlsdrhygginypkggvgeiaeklvkglekaggkiryka 250
                 + + ++l+f d+ c +  v +    p i+ +  ++        y    v +  + lv g  + g +i y+a
  MMETSP1137-20121227|5166_1 196 VAETSILEF-DAVCICCGVHEVPYVPHIDGAETFTGHALHSSSYKDKSVFRDKRALVLGCGESGMDIAYRA 265
                 455667776.999********************************************************98 PP

>> TIGR01424  gluta_reduc_2: glutathione-disulfide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.2   0.00021     0.021       6      38 ..      27      60 ..      24      72 .. 0.89

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 0.00021
   TIGR01424  6 fviGaGsGGvraarlaaalGakvaiaeedl.vGG 38
                 viGaG+ G+ aa++  + G kv+i+e+ + +GG
  MMETSP1137-20121227|5166_1 27 CVIGAGASGLVAAKYLKEAGYKVTIVEQAQaIGG 60
                69*************************9753666 PP

>> TIGR01988  Ubi-OHases: ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00032     0.032       2      49 ..      26      75 ..      25      91 .. 0.81
   2 ?   -2.6   0.0       3.9     4e+02     138     162 ..     398     422 ..     385     425 .. 0.82

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 0.00032
   TIGR01988  2 ivIvGgGlvGlalAlaLassadlkvalveakaaek...akspafdnRvsAl 49
                + ++G+G  Gl+ A  L++ +  kv++ve+++a      ++++ d+R ++ 
  MMETSP1137-20121227|5166_1 26 VCVIGAGASGLVAAKYLKEAG-YKVTIVEQAQAIGgvfDSRTYDDARLVSS 75
                789***************766.********977656765555667776665 PP

  == domain 2    score: -2.6 bits;  conditional E-value: 3.9
   TIGR01988 138 esdaveltlsdgetleakLlvgADG 162
                 + +  ++t+ dg++++ ++lv A G
  MMETSP1137-20121227|5166_1 398 KIQGDTVTFVDGRQMQVDVLVYATG 422
                 46677899**************988 PP

>> TIGR03378  glycerol3P_GlpB: glycerol-3-phosphate dehydrogenase, anaerobic, B subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.1    0.0003     0.031       3      34 ..      26      57 ..      25      75 .. 0.94

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 0.0003
   TIGR03378  3 viiiGgGlaGlscalrlaeaGkktaiiaaGqs 34
                v +iG+G +Gl +a  l+eaG k+ i+ + q+
  MMETSP1137-20121227|5166_1 26 VCVIGAGASGLVAAKYLKEAGYKVTIVEQAQA 57
                689**************************997 PP

>> TIGR02360  pbenz_hydroxyl: 4-hydroxybenzoate 3-monooxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00031     0.032       4      35 ..      25      56 ..      23      64 .. 0.93

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 0.00031
   TIGR02360  4 qvaiigaGpsGlllgqllhkaGidavilerks 35
                 v++igaG sGl+ ++ l++aG ++ i+e+ +
  MMETSP1137-20121227|5166_1 25 SVCVIGAGASGLVAAKYLKEAGYKVTIVEQAQ 56
                59***************************975 PP

>> TIGR02732  zeta_caro_desat: carotene 7,8-desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.1   0.00035     0.036       2      41 ..      26      65 ..      25      79 .. 0.89

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 0.00035
   TIGR02732  2 vaivgaglaglatavelvdaghevelyesrsflggkvgsw 41
                v ++gag +gl +a  l +ag++v + e  + +gg   s 
  MMETSP1137-20121227|5166_1 26 VCVIGAGASGLVAAKYLKEAGYKVTIVEQAQAIGGVFDSR 65
                789********************************87765 PP

>> TIGR00745  apbA_panE: 2-dehydropantoate 2-reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.5   0.00036     0.037       2      30 ..      26      54 ..      25      59 .. 0.90

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 0.00036
   TIGR00745  2 iailGaGAvGsllgakLaragadVtllar 30
                ++++GaGA G + + +L++ag++Vt++ +
  MMETSP1137-20121227|5166_1 26 VCVIGAGASGLVAAKYLKEAGYKVTIVEQ 54
                79***********************9865 PP

>> TIGR02352  thiamin_ThiO: glycine oxidase ThiO
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   1.0    0.0001     0.011       1      31 [.      26      56 ..      26      61 .. 0.91

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 0.0001
   TIGR02352  1 vlviGgGviGlsvAveLakrghkvtllekde 31
                v viG+G  Gl+ A +L+++g kvt++e+++
  MMETSP1137-20121227|5166_1 26 VCVIGAGASGLVAAKYLKEAGYKVTIVEQAQ 56
                68**************************996 PP

>> TIGR01790  carotene-cycl: lycopene cyclase family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   0.0    0.0012      0.12       2      36 ..      26      60 ..      25      69 .. 0.90
   2 ?   -2.2   0.1       3.6   3.6e+02       3      19 ..     250     266 ..     249     276 .. 0.83
   3 ?   -0.8   0.0       1.4   1.4e+02      87     141 ..     369     426 ..     341     438 .. 0.75

  Alignments for each domain:
  == domain 1    score: 9.3 bits;  conditional E-value: 0.0012
   TIGR01790  2 liviGgGlAglaiAlelakpglrvqlieaapklpf 36
                + viG+G +gl+ A  l+++g +v ++e a+ +++
  MMETSP1137-20121227|5166_1 26 VCVIGAGASGLVAAKYLKEAGYKVTIVEQAQAIGG 60
                68**************************8887765 PP

  == domain 2    score: -2.2 bits;  conditional E-value: 3.6
   TIGR01790   3 iviGgGlAglaiAlela 19 
                 +v G+G +g+ iA +  
  MMETSP1137-20121227|5166_1 250 LVLGCGESGMDIAYRAV 266
                 79***********8765 PP

  == domain 3    score: -0.8 bits;  conditional E-value: 1.4
   TIGR01790  87 lkeellqkleeavlwleakaikvead.....avslslvecaggqriqarlVidargfkal 141
                 +k++  ++++  + w e+k++k   +     + +  +v+  +g+++q  + + a+g+++ 
  MMETSP1137-20121227|5166_1 369 FKQKSWRRFV--WWWAEKKVDKSITSfpapaKIQGDTVTFVDGRQMQVDVLVYATGYRQC 426
                 5566666666..77777777765443111114567889999***************9983 PP

>> TIGR03364  HpnW_proposed: FAD dependent oxidoreductase TIGR03364
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   1.0   0.00054     0.056       2      35 ..      25      58 ..      24      61 .. 0.91

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 0.00054
   TIGR03364  2 dvvvvGaGivGlahAlaaarrGlkVtvierssra 35
                +v v+GaG  Gl  A   ++ G kVt++e++++ 
  MMETSP1137-20121227|5166_1 25 SVCVIGAGASGLVAAKYLKEAGYKVTIVEQAQAI 58
                689**************************99865 PP

>> TIGR03026  NDP-sugDHase: nucleotide sugar dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.1   0.00063     0.065       2      33 ..      25      56 ..      24      58 .. 0.92

  Alignments for each domain:
  == domain 1    score: 9.8 bits;  conditional E-value: 0.00063
   TIGR03026  2 kiavvGlGYvGlplaallaekgheVvgvDidk 33
                 ++v+G+G  Gl+ a  l e+g++V+ v+  +
  MMETSP1137-20121227|5166_1 25 SVCVIGAGASGLVAAKYLKEAGYKVTIVEQAQ 56
                59**************************9765 PP

>> TIGR01984  UbiH: 2-polyprenyl-6-methoxyphenol 4-hydroxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   0.0    0.0015      0.15       2      45 ..      26      66 ..      25      81 .. 0.85
   2 ?   -2.3   0.0       3.2   3.3e+02     137     161 ..     400     424 ..     392     428 .. 0.86

  Alignments for each domain:
  == domain 1    score: 8.7 bits;  conditional E-value: 0.0015
   TIGR01984  2 viivGgglvGlslAlaLsrksklkialieaksaeaakssfdars 45
                v ++G+g +Gl+ A  L++ +  k++++e+ +a     +fd r+
  MMETSP1137-20121227|5166_1 26 VCVIGAGASGLVAAKYLKEAG-YKVTIVEQAQAIGG--VFDSRT 66
                789******************.*******9876555..666665 PP

  == domain 2    score: -2.3 bits;  conditional E-value: 3.2
   TIGR01984 137 deaevkldneqkleakLlvaAdGan 161
                 +  +v++ ++++++ ++lv A G +
  MMETSP1137-20121227|5166_1 400 QGDTVTFVDGRQMQVDVLVYATGYR 424
                 567899999************9976 PP

>> TIGR03143  AhpF_homolog: putative alkyl hydroperoxide reductase F subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.1   0.00065     0.066       4      41 ..      23      60 ..      20      70 .. 0.85
   2 ?   -3.2   0.0       4.7   4.8e+02     119     152 ..     222     255 ..     202     272 .. 0.66

  Alignments for each domain:
  == domain 1    score: 9.6 bits;  conditional E-value: 0.00065
   TIGR03143  4 lydlvviGgGpaglsaGiyagraklkvliiekdelGGq 41
                +  + viG+G++gl a  y+  a +kv i+e+ ++ G 
  MMETSP1137-20121227|5166_1 23 VRSVCVIGAGASGLVAAKYLKEAGYKVTIVEQAQAIGG 60
                66789**************************9876444 PP

  == domain 2    score: -3.2 bits;  conditional E-value: 4.7
   TIGR03143 119 feGeeeftGrGvaycatcdGefftGldvlviGgG 152
                  +G e ftG  +   +  d   f+ +  lv+G G
  MMETSP1137-20121227|5166_1 222 IDGAETFTGHALHSSSYKDKSVFRDKRALVLGCG 255
                 3455666666666666666666666666666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (630 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       218  (0.0531448); expected 82.0 (0.02)
Passed bias filter:                      176  (0.0429059); expected 82.0 (0.02)
Passed Vit filter:                        76  (0.0185275); expected 4.1 (0.001)
Passed Fwd filter:                        40  (0.00975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              40  [number of targets reported over threshold]
# CPU time: 0.77u 0.19s 00:00:00.96 Elapsed: 00:00:00.54
# Mc/sec: 1539.87
//
Query:       MMETSP1137-20121227|5167_1  [L=88]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (88 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        32  (0.00780107); expected 82.0 (0.02)
Passed bias filter:                       30  (0.00731351); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.18s 00:00:00.32 Elapsed: 00:00:00.26
# Mc/sec: 446.73
//
Query:       MMETSP1137-20121227|5168_1  [L=169]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (169 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       111  (0.02706); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.17s 00:00:00.35 Elapsed: 00:00:00.31
# Mc/sec: 719.55
//
Query:       MMETSP1137-20121227|5170_1  [L=214]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (214 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       101  (0.0246221); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.14s 00:00:00.33 Elapsed: 00:00:00.35
# Mc/sec: 807.02
//
Query:       MMETSP1137-20121227|5171_1  [L=496]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.1e-16   58.7  14.6    1.9e-14   51.3   2.7    2.2  2  TIGR00881 2A0104: phosphoglycerate transporter family protein
    6.7e-14   49.4   9.8    6.7e-14   49.4   6.8    2.6  3  TIGR00895 2A0115: MFS transporter, aromatic acid:H+ symporter (AAHS) family
    1.1e-13   48.7   3.8    1.1e-13   48.7   2.6    2.2  2  TIGR00893 2A0114: D-galactonate transporter
    2.2e-09   35.4  11.1    2.2e-09   35.4   7.7    3.2  3  TIGR00880 2_A_01_02: multidrug resistance protein
    2.2e-07   27.8   4.1    4.1e-07   26.9   2.9    1.4  1  TIGR00711 efflux_EmrB: drug resistance MFS transporter, drug:H+ antiporter-2 (14 Spanner) (DHA2) family
      1e-06   26.2  21.7     0.0014   15.8   7.0    2.4  2  TIGR00900 2A0121: H+ Antiporter protein
    6.6e-05   19.4   2.5    6.6e-05   19.4   1.7    1.9  2  TIGR00894 2A0114euk: Na(+)-dependent inorganic phosphate cotransporter
    0.00025   18.1   3.8    0.00025   18.1   2.6    1.4  2  TIGR02332 HpaX: 4-hydroxyphenylacetate permease
  ------ inclusion threshold ------
      0.082   10.1  16.4       0.56    7.4  11.4    2.1  1  TIGR00710 efflux_Bcr_CflA: drug resistance transporter, Bcr/CflA subfamily
       0.65    5.6   5.0       0.96    5.0   3.4    1.1  1  TIGR01299 synapt_SV2: synaptic vesicle protein SV2


Domain annotation for each model (and alignments):
>> TIGR00881  2A0104: phosphoglycerate transporter family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.3   2.7   4.6e-17   1.9e-14      19     178 ..      42     205 ..      33     214 .. 0.91
   2 !   12.7   2.1   2.6e-05     0.011     245     376 ..     253     392 ..     241     394 .. 0.84

  Alignments for each domain:
  == domain 1    score: 51.3 bits;  conditional E-value: 4.6e-17
   TIGR00881  19 pelqeeiglsktdlGlllsafsiaYgiskfvvgvvsDrvsarvflaigLilvaivnlflgfssslwvliallalnGlfqglgwppcgrlltkwfsrserGtvvaiwnishnvggallpplvllaialll.....swhvvfivpgiiaiivslilllllrdspqsv 178
                  el +e+gl  + lG ++ +  +a +i  + ++ ++  v+ +  + ig ++++i+++ +g s+s   l+a++ l+G + g+  p+  ++ + +f++ +rG++++i+ +s+n gg l   l ++ +a +       w+v+f+ +g++ ++ ++++l ++ +++ + 
  MMETSP1137-20121227|5171_1  42 YELCAEFGLGPAALGSVTLCRGLAQAIXALGSSALASHVGRVRGVGIGCLTWGIATVAVGLSPSASWLFAARTLSGAALGITIPLIWSIAADLFNPLDRGRAFGILFCSNNTGGMLGS-LTAINFAKYSplxvdGWRVAFLAAGAVSVLTAFLVLTFVVEPKSHS 205
                 57899***************************************************************************************************************99.6777777553233337********************9998877655 PP

  == domain 2    score: 12.7 bits;  conditional E-value: 2.6e-05
   TIGR00881 245 qekglskekasvavtlfelaglvGtllaGwlsDk.....lfkgrraplavifmaliivsllvywlivaan..klvvlillfvlGflvyGpilligvaaselapkkaiGtaaglvglfaylggilaglplgylad.lfgwa 376
                 +  g+s   as +  +f  +  vGtl+ G lsD       ++gr a++ ++++ +i + l+++   +       v+l l++++G+++    ++  +  +e++p    +++ gl  ++ +l++ +  + +g+la+ +fg++
  MMETSP1137-20121227|5171_1 253 ELAGFSHGAASLIRATFDAGTTVGTLIGGVLSDCaarwsPAHGRVAVAQLSVASGIPLWLVILLALPPLHapLSVYLGLALLTGLSICWAGVVNKSVLVEVSPRGTSAAVYGLDRMLEGLVAPMCTAAVGLLAErTFGFE 392
                 556999999************************988887788888999999999999999988888877754556677788899999999999999999****9888888888888888888888889999998567776 PP

>> TIGR00895  2A0115: MFS transporter, aromatic acid:H+ symporter (AAHS) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.4   6.8   1.6e-16   6.7e-14      15     199 ..      16     205 ..       7     226 .. 0.88
   2 ?    2.2   0.3     0.036        15     281     314 ..     256     289 ..     249     349 .. 0.60
   3 ?   -1.7   0.1      0.53   2.2e+02     135     155 ..     427     447 ..     412     458 .. 0.73

  Alignments for each domain:
  == domain 1    score: 49.4 bits;  conditional E-value: 1.6e-16
   TIGR00895  15 qirvlilsflivlvdGldllvlgfaapalskewgldkvelGfllsagLiGmvlGallfgplaDrigRkrvllvsillfsvftlasalatnvtqLlvlRflaglGlGgllpnliaLvsEyapkrfratvvglvavGyaiGaavggllaallipaf......gWrslflvggiiplllllllikvLpEsikfl 199
                     ++l  l++ vd +d ++l  +   l +e+gl ++ lG++     +  ++ al +++la  +gR+r + ++ l+ ++ t+a +l+ +   L ++R+l+g  lG ++p +  ++++      r+ + g++++  + G+++g+l a +  +++      gWr+ fl +g++++l + l+ +++ E+ ++ 
  MMETSP1137-20121227|5171_1  16 LAVSFALLNLALAVDKADQAMLPAVYYELCAEFGLGPAALGSVTLCRGLAQAIXALGSSALASHVGRVRGVGIGCLTWGIATVAVGLSPSASWLFAARTLSGAALGITIPLIWSIAADLFNPLDRGRAFGILFCSNNTGGMLGSLTA-INFAKYsplxvdGWRVAFLAAGAVSVLTAFLVLTFVVEPKSHS 205
                 4555666678899****************************9977666668899****************************************************************************************98766.5444444444559************************998765 PP

  == domain 2    score: 2.2 bits;  conditional E-value: 0.036
   TIGR00895 281 gaslskaalllvllnvGgvlgslllgaladrlgp 314
                 g+s   a l+ + + +G  +g+l+ g+l+d   +
  MMETSP1137-20121227|5171_1 256 GFSHGAASLIRATFDAGTTVGTLIGGVLSDCAAR 289
                 6677777777778888888888888887775432 PP

  == domain 3    score: -1.7 bits;  conditional E-value: 0.53
   TIGR00895 135 pkrfratvvglvavGyaiGaa 155
                 ++ + a +v+l++vG++i  a
  MMETSP1137-20121227|5171_1 427 AHALAAALVTLLTVGWTICFA 447
                 555667889999999998665 PP

>> TIGR00893  2A0114: D-galactonate transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.7   2.6   2.8e-16   1.1e-13      18     177 ..      42     206 ..      25     221 .. 0.90
   2 !    4.3   3.0    0.0084       3.4     251     375 ..     260     389 ..     244     405 .. 0.70

  Alignments for each domain:
  == domain 1    score: 48.7 bits;  conditional E-value: 2.8e-16
   TIGR00893  18 vtlkedLglsaaqyglvfsafsigyvlfqlpggllldriGakktlavaivlWglftllqafatalvslivlRvllGlaEaplfPgiikivasWFPakeratavsifnsaqalgaiiggplvgwilvefs......WqlvFiieGvlaiilgvlilkvikdkpekak 177
                  +l  ++gl  a++g v+    ++ ++  l +++l   +G    + +  ++Wg+ t+++++  ++  l+++R+l G+a +  +P i  i+a  F +  r++a +i +  +  g+++g+  ++   ++ s      W+++F+  G+++++ ++l+l ++ +++++ +
  MMETSP1137-20121227|5171_1  42 YELCAEFGLGPAALGSVTLCRGLAQAIXALGSSALASHVGRVRGVGIGCLTWGIATVAVGLSPSASWLFAARTLSGAALGITIPLIWSIAADLFNPLDRGRAFGILFCSNNTGGMLGSLTAI-NFAKYSplxvdgWRVAFLAAGAVSVLTAFLVLTFVVEPKSHSA 206
                 458899**********************************999************************************************************************9875444.46666678899****************************9865 PP

  == domain 2    score: 4.3 bits;  conditional E-value: 0.0084
   TIGR00893 251 leagllaslpaivgfvgmvlggilsdlllkkg...kslvlarktaiiaglvlsllliatn.lvaskiaalalvalaffgkgl.aailwavisdvlskeiagltgGlinllG.nlagivgPivigaiaattG 375
                   a+l+ +   +   vg + gg+lsd ++++      + +a   ++ ++ +  ++l a   l a+  ++l l+ l +++    + +  +v  +v+++ +++++ Gl  +l   +a +++++ +g +a+ t 
  MMETSP1137-20121227|5171_1 260 GAASLIRATFDAGTTVGTLIGGVLSDCAARWSpahGRVAVAQLSVASGIPLWLVILLALPpLHAPLSVYLGLALLTGLSICWaGVVNKSVLVEVSPRGTSAAVYGLDRMLEgLVAPMCTAA-VGLLAERTF 389
                 5566666666667789****************99855555555554443222222222223666888999999999999888688889999**********99999999862555555554.455555443 PP

>> TIGR00880  2_A_01_02: multidrug resistance protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.4   7.7   5.4e-12   2.2e-09       6     138 ..      61     198 ..      56     201 .. 0.88
   2 ?    1.9   0.4      0.12        49      88     114 ..     261     287 ..     230     314 .. 0.77
   3 ?   -0.9   0.1      0.83   3.4e+02      57      96 ..     331     370 ..     309     394 .. 0.66

  Alignments for each domain:
  == domain 1    score: 35.4 bits;  conditional E-value: 5.4e-12
   TIGR00880   6 gyAlgqlvvsplsglltdrvGrkpvllvglfifvlsqllfalssnitvliiarilqGfgaaaalvagaaliadiikeeersvalgllsagialgpilGpllGavla.....qalgwralflilallallafilllfll 138
                   +l+q++ ++ s +l++ vGr   + +g ++  ++++++ ls + + l+ ar+l+G + ++ ++ + +++ad++++  r++a+g+l    ++g +lG l     a      + gwr+ fl+++++++l+++l+l ++
  MMETSP1137-20121227|5171_1  61 CRGLAQAIXALGSSALASHVGRVRGVGIGCLTWGIATVAVGLSPSASWLFAARTLSGAALGITIPLIWSIAADLFNPLDRGRAFGILFCSNNTGGMLGSLTAINFAkysplXVDGWRVAFLAAGAVSVLTAFLVLTFV 198
                 5699**********************************************************************************9988887777776544444355568899***********9998877776654 PP

  == domain 2    score: 1.9 bits;  conditional E-value: 0.12
   TIGR00880  88 algllsagialgpilGpllGavlaqal 114
                 a +l+ a + +g  +G l+G+vl +  
  MMETSP1137-20121227|5171_1 261 AASLIRATFDAGTTVGTLIGGVLSDCA 287
                 678888999999999999999999543 PP

  == domain 3    score: -0.9 bits;  conditional E-value: 0.83
   TIGR00880  57 arilqGfgaaaalvagaaliadiikeeersvalgllsagi 96 
                 + +l G++   a v+ ++++ +++++++ ++++gl  +  
  MMETSP1137-20121227|5171_1 331 LALLTGLSICWAGVVNKSVLVEVSPRGTSAAVYGLDRMLE 370
                 5566777777777777777778888888888777765543 PP

>> TIGR00711  efflux_EmrB: drug resistance MFS transporter, drug:H+ antiporter-2 (14 Spanner) (DHA2) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.9   2.9     1e-09   4.1e-07       7     131 ..      23     147 ..      17     205 .. 0.89

  Alignments for each domain:
  == domain 1    score: 26.9 bits;  conditional E-value: 1e-09
   TIGR00711   7 lvlalfmavldstivnvalptlaadlgaslsevqWviTsymvanaivIpltgwlakrlgerklflvsvlaFtlssllcgvannlelliifRviQgfggglliplseslllseyppekrglalalv 131
                 l lal +   d+ ++     +l a++g   + +  v+   ++a+ai  + +  la+ +g+++   ++ l++ +++++ g++++ ++l  +R++ g+  g+ ipl  s+ +  + p  rg+a +++
  MMETSP1137-20121227|5171_1  23 LNLALAVDKADQAMLPAVYYELCAEFGLGPAALGSVTLCRGLAQAIXALGSSALASHVGRVRGVGIGCLTWGIATVAVGLSPSASWLFAARTLSGAALGITIPLIWSIAADLFNPLDRGRAFGIL 147
                 55677777788888999999999**************************************************************************************************9986 PP

>> TIGR00900  2A0121: H+ Antiporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   2.6   3.9e-06    0.0016     230     343 ..      34     149 ..      11     167 .. 0.74
   2 !   15.8   7.0   3.5e-06    0.0014     166     362 ..     187     387 ..     175     389 .. 0.71

  Alignments for each domain:
  == domain 1    score: 15.7 bits;  conditional E-value: 3.9e-06
   TIGR00900 230 svllpyvtskv...lrrssvevgvvlaafglGallGalllgllgkylkraalitiavlviglailvlgllnpnlllllvlaaaiGvvvglinviigtllqrsvpaellgRVfglqes 343
                 +++lp v  +    +++++ ++g v+   gl+ ++ al+ + l+ ++ r + + i+ l+ g+a + +gl+++  +l++ +    G + g++ ++i ++ ++ +++  +gR fg+ + 
  MMETSP1137-20121227|5171_1  34 QAMLPAVYYELcaeFGLGPAALGSVTLCRGLAQAIXALGSSALASHVGRVRGVGIGCLTWGIATVAVGLSPSASWLFA-ARTLSGAALGITIPLIWSIAADLFNPLDRGRAFGILFC 149
                 3455555555445599*******************************************************8334333.33344555555555666677777889999999999876 PP

  == domain 2    score: 15.8 bits;  conditional E-value: 3.5e-06
   TIGR00900 166 gflisallivsvripkkaaseeeelseavlrdileGlkfvlknklLrtllllallfnlvfapiisvllpyvtskvlrrssvevgvvlaafglGallGalllg.......llgkylkraalitiavlv.iglailvlgllnp.n..lllllvlaaaiGvvvglinviigtllqrsvpaellgRVfglqeslssaaaplglilagpladk 362
                 + l + l++ +v  pk+ +   ++l+   lr  +  +  v++ k  + ++l ++  ++    ++   + +   +  ++s  +++++ a f +G ++G l+ g       + +    r a+++++v   i l +++l +l+p    l ++l la+  G+++    v+++++l ++ p+   ++V+gl+++l  ++ap+  +++g+la++
  MMETSP1137-20121227|5171_1 187 SVLTAFLVLTFVVEPKSHS-ATPPLR---LRAAVAEFTRVWRVKSFKVIILQGIPGTAP-WEAL--SFAVLYFELAGFSHGAASLIRATFDAGTTVGTLIGGvlsdcaaRWSPAHGRVAVAQLSVASgIPLWLVILLALPPlHapLSVYLGLALLTGLSICWAGVVNKSVLVEVSPRGTSAAVYGLDRMLEGLVAPMCTAAVGLLAER 387
                 5555555555555555444.555555...444444455555555555444443333332.2233..2333333346889999********************9998777666677788888887544133444555555555478************************************************************986 PP

>> TIGR00894  2A0114euk: Na(+)-dependent inorganic phosphate cotransporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   1.7   1.6e-07   6.6e-05     129     227 ..     104     205 ..      67     208 .. 0.85
   2 ?   -0.5   0.1      0.18        72     170     198 ..     263     291 ..     259     326 .. 0.75

  Alignments for each domain:
  == domain 1    score: 19.4 bits;  conditional E-value: 1.6e-07
   TIGR00894 129 vgvalvivlRvlqGlaeglvspaqhellakWiPPkERsrlvsavlsGaqlGtlivlpisGlicesd....lgWpavfYifgivgtvvlilwlvlvyddPseHp 227
                  ++ ++++ R l G+a g+ +p   ++ a  + P++R+r+ ++ +   + G ++  + +   + ++     gW + f   g+v+ +   l l +v  +P+ H 
  MMETSP1137-20121227|5171_1 104 PSASWLFAARTLSGAALGITIPLIWSIAADLFNPLDRGRAFGILFCSNNTGGMLGSLTAINFAKYSplxvDGWRVAFLAAGAVSVLTAFLVLTFVV-EPKSHS 205
                 5789***************************************9999999999988888888888888889***********99777666555555.588885 PP

  == domain 2    score: -0.5 bits;  conditional E-value: 0.18
   TIGR00894 170 savlsGaqlGtlivlpisGlicesdlgWp 198
                 s++ + +  Gt +  +i+G++ +   +W 
  MMETSP1137-20121227|5171_1 263 SLIRATFDAGTTVGTLIGGVLSDCAARWS 291
                 56667788899999999999999999996 PP

>> TIGR02332  HpaX: 4-hydroxyphenylacetate permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   2.6   6.1e-07   0.00025      37     189 ..      47     198 ..      30     208 .. 0.88
   2 ?   -3.9   0.0       2.9   1.2e+03     372     400 ..     263     291 ..     261     303 .. 0.77

  Alignments for each domain:
  == domain 1    score: 18.1 bits;  conditional E-value: 6.1e-07
   TIGR02332  37 dlglsatmfglaatlfyvayvifgipsnimlakvgarrwiatimvlwgiastatmfatspeslyllrilvgiaeagflpgillyltfwfpayfraranalfmvampvttalglilsgyilaldgllalkgwqwlflleglpsvllgvvvwfyl 189
                 ++gl  + +g  +     a  i  + s  + + vg  r +    + wgia+ a  ++ s + l+  r l g a    +p i    +  f    r ra  +++ +     +lg++ +   +a    l + gw+  fl  g  svl   +v  ++
  MMETSP1137-20121227|5171_1  47 EFGLGPAALGSVTLCRGLAQAIXALGSSALASHVGRVRGVGIGCLTWGIATVAVGLSPSASWLFAARTLSGAALGITIPLIWSIAADLFNPLDRGRAFGILFCSNNTGGMLGSLTAIN-FAKYSPLXVDGWRVAFLAAGAVSVLTAFLVLTFV 198
                 66777777777777777889999999**************99999****************************9999*****99999**************************87655.566677889****************998876554 PP

  == domain 2    score: -3.9 bits;  conditional E-value: 2.9
   TIGR02332 372 avinavgnvgsalsplligilkdltgsfs 400
                 ++i a+ + g+++  l+ g+l d +  +s
  MMETSP1137-20121227|5171_1 263 SLIRATFDAGTTVGTLIGGVLSDCAARWS 291
                 57889999999999999999999887665 PP

>> TIGR00710  efflux_Bcr_CflA: drug resistance transporter, Bcr/CflA subfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4  11.4    0.0014      0.56      47     341 ..      58     364 ..      14     389 .. 0.65

  Alignments for each domain:
  == domain 1    score: 7.4 bits;  conditional E-value: 0.0014
   TIGR00710  47 tlyllglavgqLllG..plsDsyGRkpvlLlgllvfalsslvlalsenietllvlRflqafgasaalVisqalvrDiyakeelskvysilmlllalaPllapliGgyvlvfl.....sWhaiFavlsligillvaliflllpeTkakekri..qistsvetfllllkdkellgyalivgassgglfaflsaapfvlidimgvspevfgllfalniialifgsfligrl...vkkigaksllrialvllivsavllvltallglvslalviavai..lvgigvslvlsialalaLeefphvaGtasallg 341
                  +   gla ++  lG   l+   GR   + +g l + ++ +++ ls+++  l ++R l + +  +++ ++ +++ D+++  +  + ++il        +l++l+     ++      +W+  F    ++ +l + l+  ++ e k + +    +++  v +f+ +++ k++   +l  g      +  ls a +++ +  g+s    +l+ a+      +g+ + g l     ++   +  +    l ++s++ l+l  ll+l+ l   ++v +   + +g s+  + ++++ +       Gt +a++g
  MMETSP1137-20121227|5171_1  58 VTLCRGLAQAIXALGssALASHVGRVRGVGIGCLTWGIATVAVGLSPSASWLFAARTLSGAALGITIPLIWSIAADLFNPLDRGRAFGILFCSNNTGGMLGSLTAINFAKYSplxvdGWRVAFLAAGAVSVLTAFLVLTFVVEPKSHSATPplRLRAAVAEFTRVWRVKSFKVIILQ-GIPGTAPWEALSFA-VLYFELAGFSHGAASLIRATFDAGTTVGTLIGGVLsdcAARWSPAHGRVAVAQLSVASGIPLWLVILLALPPLHAPLSVYLglALLTGLSICWAGVVNKSVLVEVSPRGTSAAVYG 364
                 334467777777777336999**********************************************************999*********************999888885444458*************9998888888777777766677*****************9876653.33333333333332.44555555554444444444333333333332222110333433333333355556666666666666666554444443311334445555555554433333334455555555 PP

>> TIGR01299  synapt_SV2: synaptic vesicle protein SV2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   3.4    0.0023      0.96     172     335 ..      23     178 ..      13     205 .. 0.69

  Alignments for each domain:
  == domain 1    score: 5.0 bits;  conditional E-value: 0.0023
   TIGR01299 172 lglalmadgvevfvvgfvlpsaekdlclsdsnkgllglivylgmmvgaflwggladklgrkqsllislsvnsvfaflssfvqgygtfllcrllsgvgiggaipivfsyfaevlarekrgehlswlcmfwmiggvyaaamawaiiphygwsfsmgsayqfhswrv 335
                 l lal  d  +  ++  v      ++ l  ++ g + l   l   + a+    la ++gr + + i     ++ +    +      ++ +r lsg  +g +ip+++s  a+++    rg  +  l      gg+  +  a          f   s      wrv
  MMETSP1137-20121227|5171_1  23 LNLALAVDKADQAMLPAVYYELCAEFGLGPAALGSVTLCRGLAQAIXALGSSALASHVGRVRGVGIGCLTWGIATVAVGLSPSASWLFAARTLSGAALGITIPLIWSIAADLFNPLDRGRAFGILFCSNNTGGMLGSLTAIN--------FAKYSPLXVDGWRV 178
                 555555555555444444444444444445555555555566777788888899******999999888888888877777777788889******************************9999988888888887765532........33334444445554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (496 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       164  (0.0399805); expected 82.0 (0.02)
Passed bias filter:                       97  (0.023647); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                        10  (0.00243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.49u 0.18s 00:00:00.67 Elapsed: 00:00:00.48
# Mc/sec: 1363.89
//
Query:       MMETSP1137-20121227|5172_1  [L=149]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (149 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        47  (0.0114578); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.12s 00:00:00.28 Elapsed: 00:00:00.28
# Mc/sec: 678.15
//
Query:       MMETSP1137-20121227|5173_1  [L=288]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (288 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        84  (0.0204778); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.17s 00:00:00.41 Elapsed: 00:00:00.57
# Mc/sec: 655.39
//
Query:       MMETSP1137-20121227|5175_1  [L=67]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (67 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        98  (0.0238908); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.18s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 315.83
//
Query:       MMETSP1137-20121227|5176_1  [L=155]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.6e-07   27.4   0.0    9.6e-07   26.8   0.0    1.2  1  TIGR00229 sensory_box: PAS domain S-box protein
    9.3e-07   25.5   0.0    1.1e-06   25.3   0.0    1.1  1  TIGR02938 nifL_nitrog: nitrogen fixation negative regulator NifL


Domain annotation for each model (and alignments):
>> TIGR00229  sensory_box: PAS domain S-box protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.8   0.0   4.7e-10   9.6e-07      13     105 ..      11     103 ..       4     108 .. 0.74

  Alignments for each domain:
  == domain 1    score: 26.8 bits;  conditional E-value: 4.7e-10
   TIGR00229  13 sspdaiivvdeeGnilyvNrafeeifGYsaeeliGrnvlelipeedreevrerierrlegerepvseerrvkrkdGseiwvevsvspird.agg 105
                 + p+ ii +  e +il +N++++e++GY++ +++Gr v++l  +    e+ + ++ +    ++ + + + + +k  + + + ++ sp+ d +g+
  MMETSP1137-20121227|5176_1  11 TQPELIIEAINECKILLTNPSWCELMGYAPNDVLGRXVSILNGPYTCRETLAALRLAMGAGQNLHVILVCY-KKXREPFLMTINSSPLLDgEGK 103
                 6688999********************************96655555555545555555555777777777.4443777777777777765554 PP

>> TIGR02938  nifL_nitrog: nitrogen fixation negative regulator NifL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.3   0.0   5.2e-10   1.1e-06      24     107 ..      23     106 ..      12     136 .. 0.91

  Alignments for each domain:
  == domain 1    score: 25.3 bits;  conditional E-value: 5.2e-10
   TIGR02938  24 anilyanaafseitGyakeeviGknesvlsnrttPpevyqalwgslaekkPwaGkllnrrkdgelylaeltvaPvlneaGetth 107
                   il +n ++ e+ Gya+++v+G+  s+l    t +e   al  ++   +     l+  +k +e +l  +  +P+l+  G+ t+
  MMETSP1137-20121227|5176_1  23 CKILLTNPSWCELMGYAPNDVLGRXVSILNGPYTCRETLAALRLAMGAGQNLHVILVCYKKXREPFLMTINSSPLLDGEGKPTF 106
                 679**************************************************************************9999776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (155 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        68  (0.0165773); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.18u 0.15s 00:00:00.32 Elapsed: 00:00:00.34
# Mc/sec: 601.72
//
Query:       MMETSP1137-20121227|5177_1  [L=356]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0029   13.5   0.1      0.016   11.0   0.0    2.1  2  TIGR00870 trp: transient-receptor-potential calcium channel protein


Domain annotation for each model (and alignments):
>> TIGR00870  trp: transient-receptor-potential calcium channel protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.0   0.0     4e-06     0.016     118     160 ..     145     188 ..      97     221 .. 0.76
   2 ?   -0.2   0.0      0.01        42     147     162 ..     268     283 ..     266     286 .. 0.91

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 4e-06
   TIGR00870 118 elandestseftkgit.alilAihkqnyeivklLlekgasvear 160
                  l +d +  +++ g   +l lA+h    e+v+lLl  +a+v+a 
  MMETSP1137-20121227|5177_1 145 VLLVDFADANYSLGSApPLFLAAHAGHSECVQLLLRWRADVNAE 188
                 777888888888887637***********************975 PP

  == domain 2    score: -0.2 bits;  conditional E-value: 0.01
   TIGR00870 147 vklLlekgasvearak 162
                 v++Ll  ga+++arak
  MMETSP1137-20121227|5177_1 268 VRALLREGADIHARAK 283
                 99************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (356 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        47  (0.0114578); expected 82.0 (0.02)
Passed bias filter:                       35  (0.00853242); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.27u 0.17s 00:00:00.44 Elapsed: 00:00:00.41
# Mc/sec: 1146.05
//
Query:       MMETSP1137-20121227|5178_1  [L=224]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (224 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        38  (0.00926377); expected 82.0 (0.02)
Passed bias filter:                       37  (0.00901999); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.13s 00:00:00.32 Elapsed: 00:00:00.59
# Mc/sec: 501.11
//
Query:       MMETSP1137-20121227|5179_1  [L=1533]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
          0 1477.0   0.0          0 1476.7   0.0    1.0  1  TIGR01369 CPSaseII_lrg: carbamoyl-phosphate synthase, large subunit
   3.9e-134  445.0   0.0   6.8e-134  444.2   0.0    1.4  1  TIGR01368 CPSaseIIsmall: carbamoyl-phosphate synthase, small subunit
    4.8e-20   69.6   0.0    9.6e-10   35.7   0.0    2.2  2  TIGR01205 D_ala_D_alaTIGR: D-alanine--D-alanine ligase
      6e-19   66.0   0.0    1.5e-10   38.3   0.0    2.2  2  TIGR00514 accC: acetyl-CoA carboxylase, biotin carboxylase subunit
    9.8e-19   64.2   0.0    6.1e-11   38.4   0.0    2.1  2  TIGR01235 pyruv_carbox: pyruvate carboxylase
    1.1e-16   58.6   0.3    2.9e-10   37.4   0.1    2.5  2  TIGR01142 purT: phosphoribosylglycinamide formyltransferase 2
    7.1e-16   54.9   0.0      3e-08   29.7   0.0    2.1  2  TIGR02712 urea_carbox: urea carboxylase
    4.5e-15   52.8   0.0    7.1e-15   52.1   0.0    1.1  1  TIGR01823 PabB-fungal: aminodeoxychorismate synthase
    1.8e-12   45.3   0.0    4.1e-12   44.1   0.0    1.6  1  TIGR00566 trpG_papA: glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase
    1.6e-09   35.3   0.0    3.8e-08   30.8   0.0    2.8  2  TIGR00888 guaA_Nterm: GMP synthase (glutamine-hydrolyzing), N-terminal domain
    1.7e-08   31.5   0.0    2.5e-06   24.3   0.0    2.2  2  TIGR03909 pyrrolys_PylC: pyrrolysine biosynthesis protein PylC
    1.9e-08   30.6   0.0    1.5e-07   27.6   0.0    2.1  2  TIGR01815 TrpE-clade3: anthranilate synthase
    1.2e-07   29.2   0.0    1.9e-05   22.0   0.0    2.5  2  TIGR00768 rimK_fam: alpha-L-glutamate ligases, RimK family
    1.8e-06   24.8   0.3    4.7e-05   20.2   0.1    2.3  2  TIGR00877 purD: phosphoribosylamine--glycine ligase
      6e-06   23.4   0.0     0.0004   17.4   0.0    2.3  2  TIGR02144 LysX_arch: lysine biosynthesis enzyme LysX
    0.00081   15.3   0.0     0.0026   13.6   0.0    1.6  2  TIGR02068 cya_phycin_syn: cyanophycin synthetase


Domain annotation for each model (and alignments):
>> TIGR01369  CPSaseII_lrg: carbamoyl-phosphate synthase, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ! 1476.7   0.0         0         0       4    1050 ..     460    1506 ..     457    1508 .. 0.98

  Alignments for each domain:
  == domain 1    score: 1476.7 bits;  conditional E-value: 0
   TIGR01369    4 edikkvlviGsGpivigqAaEFDYsGsqalkalkeegievvLvnsniAtvmtde.....eladkvYiePltveavekiiekErpDailltlGGqtaLnlaveleekGvLekygvkllGtkveaikkaedRekFkealkeineevakseivesveealeaaeeigyPvivRaaftlgGtGsgiaeneeelkelvekalkaspikqvlvekslagwkEiEyEvvRDskdnciivcniEnlDplGvHtGdsivvaPsqtLtdkeyqllRdaslkiirelgvegecnvqfaldPeskryvviEvnpRvsRssALAskAtGyPiAkvaaklavGysLdelkndvtketvAsfEPslDYvvvkiPrwdldkfekvdrklgtqmksvGEvmaigrtfeealqkalrsleekllglklkekeaesdeeleealkkpndrRlfaiaealrrgvsveevyeltkidrffleklkklvelekeleeeklkelkkellkkakklGfsdeqiaklvkvseaevrklrkelgivpvvkrvDtvaaEfeaktpYlYstyeeekddvevtekkkvlvlGsGpiRigqgvEFDycavhavlalreagyktilinynPEtvstDydiadrLyFeeltvedvldiiekekvegvivqlgGqtalnlakeleeagvkilGtsaesidraEdRekFsklldelgikqpkgkeatsveeakeiakeigyPvlvRpsyvlgGrameiveneeeleryleeavevskekPvlidkyledavEvdvDavadgeevliagileHiEeaGvHsGDstlvlppqklseevkkkikeivkkiakelkvkGllniqfvvkdeevyviEvnvRasRtvPfvskalgvplvklavkvllgkkleelekgvkkekksklvavkaavfsfsklagvdvvlgpemkstGEvmgigrdleeallkallaskakikkkgsvllsvkdkdkeellelakklaekglkvyategtakvleeagikaevvlkvseea.ekilellkeeeielvinltskkkkaaekgykirreaveykvplvteletaealle 1050
                  + + kvl++GsG+++igqA+EFDYsGsqa+kalkeeg+evvL+n+niA v+t++     + ad+vY++P+t+e+ve +i++Erp++i+l++GGqt+Ln+++ le++G+Leky+v++lGt+v+ai+ +edR  F+++l+eine +a s ++++v+ a++a+e+ig+P+++R+af+lgG Gsg+++++++l +++++al+ s  +q+lveksl+gwkE+EyEvvRD++dnci+vcn+En+D+lGvHtGdsiv+aPsqtLtd+ey++lR++++k++r+lg++gecn+q+aldP+s++y +iEvnpR+sRssALAskAtGyP+A vaakla+G  L +l+n+vtk+t+A+fEPslDY+vvk+Prwdl+kfe+v+r++g+ mksvGEvmaigr+fee++qkalr+ + ++ g++ ++ ea ++eele+al  +ndrR++ai  al rg++ve+++ lt+id +fl+k+k++ ++   l+e +l  l++ +l +akk G+sd+qia+l+k++e +vr+ rk+ gi+p+vk++Dt+aaEf+a+t+YlY+ty+++++d +++e+   lvlGsG++Rig++vEFD+c+v+a++alr  g k+++inynPEtvstDyd++drLyFeel++e+vld++e e +++ iv++gGq+++ la ++ ++ vk+ Gt++e id+aEdR+kFs+l+d++gi+qp+++ +ts eea+ +++++gyP+lvRpsyvl+G+am+++++e+el+ yl ea++vske+Pv+++k++e a E+dvDava+ ++vli +++eH+E+aGvHsGD+tl+lp+q+l+e  k ++ +i++k+a +lk++G++n+q++vkd++v+viE+n+RasR+ Pf sk+lgv++++la+++++ ++   + +    +++  +++vka++fsf++l+g+d+ lg+em+stGEv+++g ++++a+lka++a+++k++k+ ++l+s++d  +e++ + +kkl+++g+++y te+ta++++e+g+ +++++ +++ + + i + +  +eielv+  +++ ++ + ++y irr av+y+vpl+t++e+a++++ 
  MMETSP1137-20121227|5179_1  460 KPLTKVLLLGSGGLSIGQAGEFDYSGSQAIKALKEEGLEVVLINPNIASVQTNKdgqgqSPADRVYLLPVTPEFVEDVIKRERPEGIILSMGGQTGLNCGIALEKRGILEKYNVRVLGTQVDAIEATEDRGIFSDKLNEINERIAPSFACNTVDAAIAASEKIGFPLMIRSAFALGGLGSGLCYDKAQLLSMARTALASS--PQILVEKSLKGWKEVEYEVVRDAADNCITVCNMENFDALGVHTGDSIVIAPSQTLTDEEYHMLRTTAIKVVRHLGIVGECNIQYALDPDSQDYCIIEVNPRLSRSSALASKATGYPLAFVAAKLALGKLLPDLTNSVTKSTTACFEPSLDYIVVKVPRWDLSKFERVSREIGSAMKSVGEVMAIGRSFEESMQKALRMTDPAIAGFEANDFEAATEEELEHALGVANDRRVYAIGLALERGMTVERIHALTDIDMWFLYKCKRISDMRLILSEYTLATLPATTLLQAKKSGYSDSQIATLIKSDELSVREFRKSFGITPFVKQIDTMAAEFPAATNYLYTTYNGDEHDLDFEEH-GTLVLGSGVYRIGSSVEFDWCSVSAIRALRGLGRKSVMINYNPETVSTDYDECDRLYFEELSLERVLDVYELEGCDQAIVSVGGQIPNTLALKMGNSDVKVAGTTPEMIDTAEDRNKFSALCDSVGIDQPEWQLLTSPEEATAFCDKVGYPCLVRPSYVLSGAAMNVAYSEDELKGYLLEAATVSKEHPVVVSKFIEGAREIDVDAVAQRGRVLIKAVSEHVENAGVHSGDATLMLPAQTLTEAEKAEVDKITAKLADALKITGPFNMQLIVKDGTVKVIECNLRASRSCPFSSKVLGVNFIELATRAMMSEEDIPEVE--VPTHSDAYIGVKAPMFSFQRLKGADPSLGVEMASTGEVACFGPTKYDAFLKAMMATTMKLPKN-NILVSIQDLLREKAIPSLKKLHKLGYTLYGTEKTAAYMQEQGVPVTLLHYKESGQePCIDDYIYRGEIELVLMFSNQFSQRVLTNYAIRRLAVDYGVPLITNIEVAQLFAD 1506
                  6789************************************************862222257*******************************************************************************************************************************************..9**************************************************************************************************************************************************************************************************************************************************************************************************************************************************************999.9*********************************************************************************************************************************************************************************************************************************************************************************************************************999888554..5677779**************************************************999876.7888889***************************************998665555388889**************9999999999*********************99986 PP

>> TIGR01368  CPSaseIIsmall: carbamoyl-phosphate synthase, small subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  444.2   0.0  2.7e-136  6.8e-134       2     359 ..      73     438 ..      72     440 .. 0.95

  Alignments for each domain:
  == domain 1    score: 444.2 bits;  conditional E-value: 2.7e-136
   TIGR01368   2 tlvledGtvfegksfgaekevvGevvFnTsmtGYqEiltDpsYkgqivvltyplignygvneeda.........eskkikvkglvvkelskevsnyrakesLeeflkeegivaiegvDTRalvkklRekgsmkavisteksekeelveka.kespkvkevnlvkevstkeayeleqkakkegkklrvvvidlGvKenilreLvkrgvevtvvpadtsaeeikklnpdgillsnGPGdPaaveeaietvkkllea.......kiPifGIclGhqllalalgaktyklkfGhrGaNhpvkdlktgrveitsqNHgyavdeeslkeeelevthvnlnDgtveglehkelpvfsvQyHPeaspGphdteylFdefveli 359
                 tlvledGt ++g sfg+e +v Ge+vF+T+m+GY+E+ltDpsY+gqi+v+typ ignygv+e+d+         es++++v++l+v+++s++ s++++++sL+++l++++++a++g+DTR l+kk+R kg+++a+i+ e + k  ++ ++  e+p++   nl++evstke++ + +     g+k++++++d+GvK+ni+r+Lv+r++evt+vp+dt+++ +++   dg++lsnGPG+Pa+v+ +i+++k++++a        +PifGIclG+q+l+ a+ga t+kl fG+rG+N+pv++l + r+ it qNHgya+d + l+ e++e+ ++n nD+++eg++hk++p f+ Q+HPea++Gp+dt++lFd f+e++
  MMETSP1137-20121227|5179_1  73 TLVLEDGTRLKGVSFGYEASVSGEIVFTTGMVGYPESLTDPSYRGQILVMTYPIIGNYGVPEDDEdawglprffESDHVQVAALIVSDYSHHHSHWNSRRSLSQWLNQQKVPALYGIDTRLLTKKIRAKGALRAYIEFEPNVKLAEAPQVtFEDPNL--RNLAAEVSTKETKVYGE-----GNKHKILAVDCGVKANIIRSLVQRDAEVTLVPWDTPLAPLMDKF-DGLFLSNGPGNPASVQVTIDNIKAVMDAqlsgeapVKPIFGICLGNQMLGMAAGATTFKLPFGNRGQNQPVINLLSRRCVITPQNHGYALDADKLP-EDWEALFQNRNDDSNEGIMHKTKPWFTAQFHPEAKCGPSDTSFLFDLFLETL 438
                 79**************************************************************99************************************************************************9976555555440456666..5************9994.....77779**********************************99999.**************************99788877779*********************************************************87.66**********************************************9986 PP

>> TIGR01205  D_ala_D_alaTIGR: D-alanine--D-alanine ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.4   0.0   7.9e-11     2e-08      19     285 ..     484     759 ..     473     761 .. 0.80
   2 !   35.7   0.0   3.7e-12   9.6e-10     105     284 ..    1126    1296 ..    1109    1323 .. 0.83

  Alignments for each domain:
  == domain 1    score: 31.4 bits;  conditional E-value: 7.9e-11
   TIGR01205  19 SakavlkaLkkekydvyavdikkqgswvvkdlkkklleqgg.............ekleeidvvfpvlHGrdGEDGtiq....glLellgipyvGsgvlaSalsmdKlltKlllkalglpvadyavlerkeekseeaekekleklglpvivKpareGSSvGvskvkseeeleealeeafeydeevlveeaikg.relevsvlekeealpiieiveekekedFydYeaKYldgs.aelvipae.lseeeeekikelalkaykalgcrglaRvDffleke.geiylnEiNt 285
                 S+ + +kaLk+e+ +v+ ++ + +   + kd + +   +++              k e+ + ++  + G++G +  i+    g+Le ++++ +G +v a  ++ d+ ++   l++ +  +a+  + +  +       +++ ek+g+p++++ a +   +G   + ++ +l ++++ a+  + ++lve+ +kg +e+e  v++ + a ++i +++ ++      ++a   +   + ++ p + l++ee++ +++ a+k++++lg  g   + + l+ +   + + E+N+
  MMETSP1137-20121227|5179_1 484 SGSQAIKALKEEGLEVVLINPNIASVQTNKDGQGQSPADRVyllpvtpefvedvIKRERPEGIILSMGGQTGLNCGIAlekrGILEKYNVRVLGTQVDAIEATEDRGIFSDKLNEINERIAPSFACNTVDA-----AIAASEKIGFPLMIRSAFALGGLGSGLCYDKAQLLSMARTALASSPQILVEKSLKGwKEVEYEVVR-DAADNCITVCNMEN------FDALGVHTGdSIVIAPSQtLTDEEYHMLRTTAIKVVRHLGIVGECNIQYALDPDsQDYCIIEVNP 759
                 66677788888888888887777555444333333333333566666666666567777888888888888887777444449**************************9999999999999877743333.....3457899**********99999*******************************88768********.88899999999999......4554444431444555556***********************************9999******8 PP

  == domain 2    score: 35.7 bits;  conditional E-value: 3.7e-12
   TIGR01205  105 mdKlltKlllkalglpvadyavlerkeekseeaekekleklglpvivKpareGSSvGvskvkseeeleealeeafeydee..vlveeaikg.relevsvlekeealpiieiveekekedFydYeaKYldgsaelvipae.lseeeeekikelalkaykalgcrglaRvDfflekegeiylnEiN 284 
                   d+  +  l++++g++++++++l+  ee+      +  +k+g+p++v+p+   S   ++++ se+el+ +l ea+ +++e  v+v ++i+g re++v ++ +      i+ v e+        +a   +g+a l++pa+ l+e+e++++ +++ k+ +al+  g   +  +++ +g++ + E N
  MMETSP1137-20121227|5179_1 1126 EDRNKFSALCDSVGIDQPEWQLLTSPEEA--T---AFCDKVGYPCLVRPSYVLSGAAMNVAYSEDELKGYLLEAATVSKEhpVVVSKFIEGaREIDVDAVAQRG-RVLIKAVSEHV------ENAGVHSGDATLMLPAQtLTEAEKAEVDKITAKLADALKITGPFNMQLIVK-DGTVKVIECN 1296
                  5666677899*************544443..3...35788******************************999987765444******98659****9999555.45555555555......26788899999*****99******************************999.6799999988 PP

>> TIGR00514  accC: acetyl-CoA carboxylase, biotin carboxylase subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.3   0.0     6e-13   1.5e-10      94     321 ..     567     789 ..     562     800 .. 0.87
   2 !   25.4   0.0     5e-09   1.3e-06      95     314 ..    1107    1320 ..    1070    1351 .. 0.84

  Alignments for each domain:
  == domain 1    score: 38.3 bits;  conditional E-value: 6e-13
   TIGR00514  94 lveesgltfiGpsaeairlmGdkvsaketmkkagvpvvpGsdGlvedveeaveiakeiGypviikataGGGGrGlrvvreedelvkslkaakaeakaafnndgvylekfienprhveiqvladkyGnvvylgerd..csiqrrkqklleeapspaltselrkkiGeaavkaaksigytgaGtveflldkege.fyflemntriqvehpvtemvtgvdlikeqirvakGekl 321
                 + e+ ++  +G + +ai+   d+    + +++++  + p      ++v+ a++ +++iG+p++i+++   GG G  +  ++++l   l++a++      + +++ +ek ++  + ve +v+ d   n + +++ +   ++   +   +  aps +lt+e  + +  +a+k+++++g +g   +++ ld + + +  +e+n r+    +++ + tg  l     ++a G+ l
  MMETSP1137-20121227|5179_1 567 ILEKYNVRVLGTQVDAIEATEDRGIFSDKLNEINERIAPSF--ACNTVDAAIAASEKIGFPLMIRSAFALGGLGSGLCYDKAQL---LSMARTA---LASSPQILVEKSLKGWKEVEYEVVRDAADNCITVCNMEnfDALGVHTGDSIVIAPSQTLTDEEYHMLRTTAIKVVRHLGIVGECNIQYALDPDSQdYCIIEVNPRLSRSSALASKATGYPLAFVAAKLALGKLL 789
                 56888999999************999999999999999976..47899999***************999999999999988765...5666653...335799************************99987654114788888889999**************************************887758899******9999999999999888888888887765 PP

  == domain 2    score: 25.4 bits;  conditional E-value: 5e-09
   TIGR00514   95 veesgltfiGpsaeairlmGdkvsaketmkkagvpvvpGsdGlvedveeaveiakeiGypviikataGGGGrGlrvvreedelvkslkaakaeakaafnndgvylekfienprhveiqvladkyGnvvy.lgerdcsiqrrkqklleeapspaltselrkkiGeaavkaaksigytgaGtveflldkegefyflemntriqvehpvtemvtgvdlikeqir 314 
                  + +s+++  G ++e i +  d++   ++   +g+   p  + l+ + eea++  +++Gyp +++ +    G  + v+ +edel   l     ea++  +++ v + kfie  r +++  +a++    +  ++e                p+ +lt+  ++++ + ++k+a ++  tg   ++++++ +g    +e n r     p + +v gv++i+   r
  MMETSP1137-20121227|5179_1 1107 MGNSDVKVAGTTPEMIDTAEDRNKFSALCDSVGIDQ-PEWQ-LLTSPEEATAFCDKVGYPCLVRPSYVLSGAAMNVAYSEDELKGYLL----EAATVSKEHPVVVSKFIEGAREIDVDAVAQRGRVLIKaVSEHVENAGVHSGDATLMLPAQTLTEAEKAEVDKITAKLADALKITGPFNMQLIVK-DGTVKVIECNLRASRSCPFSSKVLGVNFIELATR 1320
                  556788889999999999999999999998888764.5444.788899**********************************998875....888999999********************8866666524555444444444555568******************************9999997.99*************************9986665 PP

>> TIGR01235  pyruv_carbox: pyruvate carboxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.4   0.0   2.4e-13   6.1e-11     137     322 ..     608     790 ..     566     802 .. 0.79
   2 !   23.6   0.0   6.7e-09   1.7e-06      98     310 ..    1110    1316 ..    1074    1359 .. 0.79

  Alignments for each domain:
  == domain 1    score: 38.4 bits;  conditional E-value: 2.4e-13
   TIGR01235 137 pvetleevldfakaiGyPvilkaayGGGGrGmrvvrseeevadaferakseakaafG.ndevyveklierpkhievqllgdkaGnvvhlf..erdcsvqrrhqkvvevaPakslsrevrdklaeaavklakevnyinaGtveflvdedt.kfyfievnpriqvehtvteeitGidivkaqikvaeGaslp 322
                   +t++++   +++iG+P+++++a+  GG G  +  +++++        s a++a+    ++ vek ++  k +e  ++ d a n + +   e   ++       + +aP+++l++e  + l ++a+k+ ++ +  +   +++ +d d+ ++  ievnpr+    +++ + tG  +     k+a G+ lp
  MMETSP1137-20121227|5179_1 608 ACNTVDAAIAASEKIGFPLMIRSAFALGGLGSGLCYDKAQLL-------SMARTALAsSPQILVEKSLKGWKEVEYEVVRDAADNCITVCnmENFDALGVHTGDSIVIAPSQTLTDEEYHMLRTTAIKVVRHLGIVGECNIQYALDPDSqDYCIIEVNPRLSRSSALASKATGYPLAFVAAKLALGKLLP 790
                 468999999**********************99998887765.......4566666514689***********************9877511444566777778899***************************************998467789*************9999988877777777777666 PP

  == domain 2    score: 23.6 bits;  conditional E-value: 6.7e-09
   TIGR01235   98 aGivfiGPkaevldqlGdkvaarelaikagvPvvPgtdgpvetleevldfakaiGyPvilkaayGGGGrGmrvvrseeevadaferakseakaafGndevyveklierpkhievqllgdkaGnvvhlferdcsvq.rrhqkvvevaPakslsrevrdklaeaavklakevnyinaGtveflvdedtkfyfievnpriqvehtvteeitGidivk 310 
                  + +   G ++e++d+  d+ +   l  ++g+   P    + ++ ee++ f+++ GyP +++ +y   G  m v  se+e++  + +a     +   +  v v k+ie ++ i+v  ++ +   +++                  + Pa++l+++ + ++ + + kla++   ++   ++ +v++ +    ie n r       + ++ G++ ++
  MMETSP1137-20121227|5179_1 1110 SDVKVAGTTPEMIDTAEDRNKFSALCDSVGIDQ-P-EWQLLTSPEEATAFCDKVGYPCLVRPSYVLSGAAMNVAYSEDELKGYLLEA----ATVSKEHPVVVSKFIEGAREIDVDAVAQRGRVLIKAVSEHVENAgVHSGDATLMLPAQTLTEAEKAEVDKITAKLADALKITGPFNMQLIVKD-GTVKVIECNLRASRSCPFSSKVLGVNFIE 1316
                  556666777777777777777777777777653.3.345678889**********************************99987655....55666899******************98765555554444433303444566789**********************9999888888766655.58889999999888888888888877765 PP

>> TIGR01142  purT: phosphoribosylglycinamide formyltransferase 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.0   6.1e-07   0.00016      51     256 ..     531     743 ..     493     772 .. 0.73
   2 !   37.4   0.1   1.1e-12   2.9e-10      96     295 ..    1123    1322 ..    1077    1357 .. 0.80

  Alignments for each domain:
  == domain 1    score: 18.5 bits;  conditional E-value: 6.1e-07
   TIGR01142  51 adalravierekPdfivpeie.......aiatdaLlelekegyevvPn.aratkltmnreglrrlaaeelglptakyefadsleeleeavekiGfPcvvkpvmsssGkGqsvvkgpediekaWeeakegargsaerviveefidfdveitlltvravdg.vvefcaPiGhrq...edgdykesWqPqelsekaleeakeiakrvvdaLGGlGlfGvel 256
                  ++++ vi+re+P+ i+  +         ia+++   lek +++v+ +   a++ t +r  +     +e++ + a+    ++++   +a+ekiGfP+++++  +  G G+ ++  ++++ +  +     a +s+++++ve+ ++   e+   +vr + +  ++ c+         + gd       q+l+++  +  ++ a +vv  LG  G   ++ 
  MMETSP1137-20121227|5179_1 531 PEFVEDVIKRERPEGIILSMGgqtglncGIALEKRGILEKYNVRVLGTqVDAIEATEDRG-IFSDKLNEINERIAPSFACNTVDAAIAASEKIGFPLMIRSAFALGGLGSGLCYDKAQLLSMAR----TALASSPQILVEKSLKGWKEVEYEVVRDAADnCITVCNMENFDAlgvHTGDSIVIAPSQTLTDEEYHMLRTTAIKVVRHLGIVGECNIQY 743
                 688999********9998775211111246666666666666888876257888888885.5566678888999998889**********************************9999976544....456789999999999988888888888654437777764333221112344444445567888888888888888888888777655555 PP

  == domain 2    score: 37.4 bits;  conditional E-value: 1.1e-12
   TIGR01142   96 kltmnreglrrlaaeelglptakyefadsleeleeavekiGfPcvvkpvmsssGkGqsvvkgpediekaWeeakegargsaerviveefidfdveitlltvravdg..vvefcaPiGhrqed.gdykesWqPqelsekaleeakeiakrvvdaLGGlGlfGvelfvkgdevifsevsprPhdtglvtlisqelsefelhvrai 295 
                    + +r++    + + +g+   +++  +s ee ++ ++k+G+Pc+v+p    sG    v  ++++++    ea++   ++++ v+v +fi+   ei + +v + +   + + ++ +    ++ gd +     q+l+e+ ++e+++i +++ daL  +G f ++l+vk+  v + e   r   +         ++  el  ra+
  MMETSP1137-20121227|5179_1 1123 DTAEDRNKFSA-LCDSVGIDQPEWQLLTSPEEATAFCDKVGYPCLVRPSYVLSGAAMNVAYSEDELKGYLLEAAT--VSKEHPVVVSKFIEGAREIDVDAVAQRGRvlIKAVSEHVENAGVHsGDATLMLPAQTLTEAEKAEVDKITAKLADALKITGPFNMQLIVKDGTVKVIECNLRASRSCPFSSKVLGVNFIELATRAM 1322
                  45556666654.57899**************************************************99888875..567889***************9999998843223344444443331455555566789**********************************9999998888777665555555556666666665 PP

>> TIGR02712  urea_carbox: urea carboxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.7   0.0   1.2e-10     3e-08     137     319 ..     610     788 ..     604     805 .. 0.85
   2 !   23.0   0.0   1.2e-08     3e-06      17     354 ..    1039    1362 ..    1034    1435 .. 0.78

  Alignments for each domain:
  == domain 1    score: 29.7 bits;  conditional E-value: 1.2e-10
   TIGR02712 137 esleealeaaeeigyPvmlkstaGGGGiGlqkvdsaeeleeafesvkrlgesffsdagvflekfvekarhvevqilGdgkGkvvalgerdC..slqrrnqkvveetPaPnlpeevrekllkaaeklaeavnyrsaGtvefiydekrdefyflevntrlqvehpvteavtgldlvewmvrlaagea 319
                 +++++a++a+e+ig+P+m++s+   GG+G   + ++++l +   +      +  s+  + +ek ++  + ve  ++ d + + +++ + +   +l       +  +P+  l++e  + l+++a k+++++   +   +++  d++ +++  +evn rl    +++ + tg  l  +  +la g+ 
  MMETSP1137-20121227|5179_1 610 NTVDAAIAASEKIGFPLMIRSAFALGGLGSGLCYDKAQLLSMART------ALASSPQILVEKSLKGWKEVEYEVVRDAADNCITVCNMENfdALGVHTGDSIVIAPSQTLTDEEYHMLRTTAIKVVRHLGIVGECNIQYALDPDSQDYCIIEVNPRLSRSSALASKATGYPLAFVAAKLALGKL 788
                 6799********************************999764332......3446779**********************99888765443226777777778889****************************************************999999999999888877777777665 PP

  == domain 2    score: 23.0 bits;  conditional E-value: 1.2e-08
   TIGR02712   17 irtlkklgirsvavysdadkasqhvkdadeavalgeataaesylkidkileiakktga.eaiiPGyGflsenaafaeaceaagivfvGPtpeqlrklGlkhtarelaeaagvPllpGtgllesleealeaaeeigyPvmlkstaGGGGiGlqkvdsaeeleeafesvkrlgesffsdagvflekfvekarhvevqilGdgkGkvv..algerdCslqrrnqkvveetPaPnlpeevrekllkaaeklaeavnyrsaGtvefiydekrdefyflevntrlqvehpvteavtgldlvewmvrlaagea.pdldelkvekprGaaiearvyaedPakdfqPspGl 354 
                  ir+l+ lg +sv +  +++  s+  ++ d+ +           l+ +++l++ +  g+ +ai+   G + +  ++a ++ + ++   G tpe +++   + +  +l  + g+   p  +ll+s eea++ ++++gyP +++ +    G  ++   s++el+    +   ++    ++  v + kf+e ar ++v  +   +G+v+  a+ e                Pa  l+e+ ++++ k + kla+a++  +   ++ i   k +++  +e n r     p   +v g++++e+  r   +e+  ++ e+ +++     ++a +++ + +k   Ps G+
  MMETSP1137-20121227|5179_1 1039 IRALRGLGRKSVMINYNPETVSTDYDECDRLYF--------EELSLERVLDVYELEGCdQAIVSVGGQIPN--TLALKMGNSDVKVAGTTPEMIDTAEDRNKFSALCDSVGID-QPEWQLLTSPEEATAFCDKVGYPCLVRPSYVLSGAAMNVAYSEDELKGYLLEAATVS----KEHPVVVSKFIEGAREIDVDAVAQ-RGRVLikAVSEHVENAGVHSGDATLMLPAQTLTEAEKAEVDKITAKLADALKITGPFNMQLI--VKDGTVKVIECNLRASRSCPFSSKVLGVNFIELATRAMMSEEdIPEVEVPTHSDAYIGVKAPMFSFQRLKGADPSLGV 1362
                  666666666666666666666665555554332........227788888888888762466666665543..5788999*****************************9998.58899*****************************************99887665555....5679***************98875.677762245555444445555556668************************98877777777..56788999************************9988655333033333444454566777778888888888888775 PP

>> TIGR01823  PabB-fungal: aminodeoxychorismate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.1   0.0   2.8e-17   7.1e-15      22     208 ..     264     442 ..     247     460 .. 0.77

  Alignments for each domain:
  == domain 1    score: 52.1 bits;  conditional E-value: 2.8e-17
   TIGR01823  22 vallekaldvrvsvitvhsDkldddllellqlfdaivvGPGPGdPnvak.dvgilsevf..elan.ldevPvlGiCLGfqslcLaqGadierlplplhGqvsevktsdaaifegvssvkstryhsLyankesidsllalilledeedqilmsvkakkkPifGvqyhPesvksekesvkllknflklalinn 208
                 ++     ++  + v+ v +D++   l +l+ +fd + +  GPG+P   +  +  ++ v   +l++ +   P++GiCLG q l +a Ga+  +lp+   Gq + v  +   + + ++  +    ++L a k + d      l ++ +d     + +k kP+f  q+hPe+ +   ++  l+  fl+  ++++
  MMETSP1137-20121227|5179_1 264 IR---SLVQRDAEVTLVPWDTP---LAPLMDKFDGLFLSNGPGNPASVQvTIDNIKAVMdaQLSGeAPVKPIFGICLGNQMLGMAAGATTFKLPFGNRGQNQPVI-NLLSRRCVITP-QNH-GYALDADKLPEDW---EALFQNRNDDSNEGIMHKTKPWFTAQFHPEAKCGPSDTSFLFDLFLETLDNPD 442
                 33...33344468999***997...889999**************66431455578887224566677889*****************************98874.33444454443.333.4579999988887...5666777777778899***************9998888999999998777665 PP

>> TIGR00566  trpG_papA: glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.1   0.0   1.6e-14   4.1e-12      34     181 ..     282     425 ..     257     437 .. 0.71

  Alignments for each domain:
  == domain 1    score: 44.1 bits;  conditional E-value: 1.6e-14
   TIGR00566  34 ltlqeieallpllsivisPGPctPdeaaiss..lelie..hlaGkl...PilGvClGhqalaqafGadvvraekvkhGkvseiehngaavfaglfnPdalkatryhslvveaetldtllevtaleeeeieimairhrdlpleGvqfhPesilsel 181
                      ++++     + +s GP++P+   + +  ++++   +l+G     Pi+G+ClG q l++a Ga   ++     G+ + +          l + +++ + + h   ++a++l++  e   ++ +++   +i h+ +p++  qfhPe+ +   
  MMETSP1137-20121227|5179_1 282 PLAPLMDKFDG---LFLSNGPGNPASVQVTIdnIKAVMdaQLSGEApvkPIFGICLGNQMLGMAAGATTFKLPFGNRGQNQPV--------INLLSRRCVITPQNHGYALDADKLPEDWEALFQNRNDDSNEGIMHKTKPWFTAQFHPEAKCGPS 425
                 33333333333...679*******98776642233332113456558899*******************99976666665554........33445556666799***************999999999999*****************988654 PP

>> TIGR00888  guaA_Nterm: GMP synthase (glutamine-hydrolyzing), N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.8   0.0   1.5e-10   3.8e-08      12     168 ..     261     421 ..     252     438 .. 0.70
   2 ?    0.3   0.0      0.34        87      34      75 ..     535     577 ..     524     580 .. 0.65

  Alignments for each domain:
  == domain 1    score: 30.8 bits;  conditional E-value: 1.5e-10
   TIGR00888  12 qliaRrlrelgvyselvpatttleeikevepkgiilsGgPesvka.enaekvdekifelgv.......PvlGiCyGmqllakalGgeveraekreygkae..levldedelfkglekelkvWmshgDkvkelPegfkvlaksen.cpvaalkkeekklyGvqfhPevt 168
                   i R+l + + +  lvp++t+l  + ++   g+ ls gP    + + + +  ++++++++       P++GiC+G q+l +a G ++ +    + g+ +  +++l +  ++     + + ++       +lPe+++ l +  n    + + +++k+++  qfhPe +
  MMETSP1137-20121227|5179_1 261 ANIIRSLVQRDAEVTLVPWDTPLAPLMDK-FDGLFLSNGPGNPASvQVTIDNIKAVMDAQLsgeapvkPIFGICLGNQMLGMAAGATTFKLPFGNRGQNQpvINLLSRRCVI---TPQNHGYALD---ADKLPEDWEALFQNRNdDSNEGIMHKTKPWFTAQFHPEAK 421
                 569999999999**************975.49*****888653331223333444444432222233499****************99998877777765113333333333...2333334444...4579*****99888773567899999************76 PP

  == domain 2    score: 0.3 bits;  conditional E-value: 0.34
   TIGR00888  34 leeikevepkgiilsGgPesvkaen.aekvdekifelgvPvlG 75 
                 ++ ik  +p+giils g +   + + a +    + + +v vlG
  MMETSP1137-20121227|5179_1 535 EDVIKRERPEGIILSMGGQTGLNCGiALEKRGILEKYNVRVLG 577
                 46688999*******7766554443033444444456666666 PP

>> TIGR03909  pyrrolys_PylC: pyrrolysine biosynthesis protein PylC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.7   0.0    0.0089       2.3     123     256 ..     622     764 ..     605     786 .. 0.77
   2 !   24.3   0.0   9.6e-09   2.5e-06     123     280 ..    1161    1325 ..    1151    1340 .. 0.78

  Alignments for each domain:
  == domain 1    score: 4.7 bits;  conditional E-value: 0.0089
   TIGR03909 123 sefPvlvkPscesssegvriindrkeleel..lklesednlvveeyleG.esvsleviGdkgnyavvkiteleida....tydCkrvlaPaeldl.ekkdefrelalklaaelnlkGimdvevilhe..eklkvleidarlPsq 256
                  +fP++++ + + +  g    +d+ +l  +    l s ++++ve  l+G + v  ev+ d  +  +      ++da    t d   v+aP +  + e  + +r  a+k+ ++l + G  +++  l++  +++ ++e++ rl   
  MMETSP1137-20121227|5179_1 622 IGFPLMIRSAFALGGLGSGLCYDKAQLLSMarTALASSPQILVEKSLKGwKEVEYEVVRDAADNCITVCNMENFDAlgvhTGDS-IVIAPSQTLTdEEYHMLRTTAIKVVRHLGIVGECNIQYALDPdsQDYCIIEVNPRLSRS 764
                 589***********************99995556899************66799****99988765555555566533224465.799**9865515567899***************99999887522678999999999543 PP

  == domain 2    score: 24.3 bits;  conditional E-value: 9.6e-09
   TIGR03909  123 sefPvlvkPscesssegvriindrkeleel.lk...lesednlvveeyleGe.svsleviGdkgnyavvkiteleidat..y..dCkrvlaPae.ldlekkdefrelalklaaelnlkGimdvevilheeklkvleidarlPsqtPivvykssGinlvelllkafteG 280 
                   ++P lv+Ps   s   +++ ++++el+   l+     +e  +vv  ++eG   + ++ + + g   + k    +++++  +  d   ++ Pa+ l    k e  +++ kla +l++ G  +++ i+++  +kv+e + r     P    k  G+n++el ++a    
  MMETSP1137-20121227|5179_1 1161 VGYPCLVRPSYVLSGAAMNVAYSEDELKGYlLEaatVSKEHPVVVSKFIEGArEIDVDAVAQRGRVLI-KAVSEHVENAgvHsgDA-TLMLPAQtLTEAEKAEVDKITAKLADALKITGPFNMQLIVKDGTVKVIECNLRASRSCPFS-SKVLGVNFIELATRAMMSE 1325
                  479************************98634411145677899*******62577777877776544.44444555432243377.555566615556789**************************************99989976.5889********9998765 PP

>> TIGR01815  TrpE-clade3: anthranilate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.6   0.0   5.8e-10   1.5e-07     530     688 ..     261     420 ..     218     425 .. 0.73
   2 ?   -0.1   0.0      0.15        38      58      90 ..    1202    1237 ..    1179    1264 .. 0.77

  Alignments for each domain:
  == domain 1    score: 27.6 bits;  conditional E-value: 5.8e-10
   TIGR01815 530 htlanylrqtGasvttlrhsvaeelldeerpdlvvlspGpGrpkdfdvk.etikaalardl.......pvfGvclGlqglveafGGeldvlaepvhGkasrirvlepdvlfaglpeeltvGryhslfarsdrlpkelk.vtaesedgvimaiehrklpvaavqfhpes 688
                   +   l q  a vt +      + l   + d + ls GpG+p+  +v  + ika++  +l       p+fG+clG q l  a G    +l+    G++  +  l +        + +   + h    ++d+lp++   +  + +d+   +i h+++p  + qfhpe+
  MMETSP1137-20121227|5179_1 261 ANIIRSLVQRDAEVTLVPWDTPLAPL-MDKFDGLFLSNGPGNPASVQVTiDNIKAVMDAQLsgeapvkPIFGICLGNQMLGMAAGATTFKLPFGNRGQNQPVINLLS-------RRCVITPQNHGYALDADKLPEDWEaLFQNRNDDSNEGIMHKTKPWFTAQFHPEA 420
                 34444555667777777655554444.34678899*********99986356777766666555566689**********************999999876654444.......34455678999999********972456789999******************96 PP

  == domain 2    score: -0.1 bits;  conditional E-value: 0.15
   TIGR01815   58 pvalsas...GrtlriealnerGevllpviaealkk 90  
                  pv +s +    r + ++a+ +rG+vl+ ++ e +++
  MMETSP1137-20121227|5179_1 1202 PVVVSKFiegAREIDVDAVAQRGRVLIKAVSEHVEN 1237
                  555554322257899****************99875 PP

>> TIGR00768  rimK_fam: alpha-L-glutamate ligases, RimK family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   0.0     0.015         4      67     150 ..     567     651 ..     554     774 .. 0.75
   2 !   22.0   0.0   7.5e-08   1.9e-05      79     180 ..    1119    1219 ..    1107    1312 .. 0.91

  Alignments for each domain:
  == domain 1    score: 4.5 bits;  conditional E-value: 0.015
   TIGR00768  67 aleslGveviN.ssqaienagdKllssalLakaglplpktlvagseeeakklieeigfPvvlKpvfGswGklvvlvedkqeaekl 150
                 +le+  v+v+  + +aie+ +d+ + s +L + +  +  ++     ++a ++ e+igfP+ ++++f   G +  l+ dk+++ ++
  MMETSP1137-20121227|5179_1 567 ILEKYNVRVLGtQVDAIEATEDRGIFSDKLNEINERIAPSFACNTVDAAIAASEKIGFPLMIRSAFALGGLGSGLCYDKAQLLSM 651
                 5777777777525689999****999999999999999999999**********************9999999999998876544 PP

  == domain 2    score: 22.0 bits;  conditional E-value: 7.5e-08
   TIGR00768   79 sqaienagdKllssalLakaglplpktlvagseeeakklieeigfPvvlKpvfGswGklvvlvedkqeaekll.ealeqlkekykvflvQeyikksggrdiRv 180 
                  +++i++a+d+ + sal    g+++p++ +++s+eea ++ +++g+P  ++p     G ++  +  ++e++  l ea  + k   + ++v ++i+ + + d+ +
  MMETSP1137-20121227|5179_1 1119 PEMIDTAEDRNKFSALCDSVGIDQPEWQLLTSPEEATAFCDKVGYPCLVRPSYVLSGAAMNVAYSEDELKGYLlEAATVSK--EHPVVVSKFIEGAREIDVDA 1219
                  789*****************************************************************9986615555555..4677899***9998888755 PP

>> TIGR00877  purD: phosphoribosylamine--glycine ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.0     0.054        14      84     206 ..     568     684 ..     517     730 .. 0.82
   2 !   20.2   0.1   1.8e-07   4.7e-05      64     292 ..    1087    1299 ..    1047    1343 .. 0.74

  Alignments for each domain:
  == domain 1    score: 2.2 bits;  conditional E-value: 0.054
   TIGR00877  84 leeaGikvfGpkkeAaklEasKafakdllkkagiptaeyevftepeeakeyieekgapaivvkadgLaaGKgvivvkdeeealkaveeilekkkfgeagekvviEefleG.eEvsllalvdgkt 206
                 le+  ++v+G + +A +   ++    d l++++ ++a   + + ++ a +  e+ g+p ++++     +G g  +++d+ + l++++ +l +      + ++++E+ l+G +Ev + ++ d  +
  MMETSP1137-20121227|5179_1 568 LEKYNVRVLGTQVDAIEATEDRGIFSDKLNEINERIAPSFACNTVDAAIAASEKIGFP-LMIRSAFALGGLGSGLCYDKAQLLSMARTALAS------SPQILVEKSLKGwKEVEYEVVRDAAD 684
                 777788899999999888888888888899999999999999***************9.555555566999********9999999999988......489*********66999998888654 PP

  == domain 2    score: 20.2 bits;  conditional E-value: 1.8e-07
   TIGR00877   64 kidlavigpEapLvlGlvdaleeaGikvfGpkkeAaklEasKafakdllkkagiptaeyevftepeeakeyieekgapaivvkadgLaaGKgvivvkdeeealkaveeilekkkfgeagekvviEefleGe.EvsllalvdgktvvplplaqdhkrvlegDkgpnTGGmGayspapvvteevekkiaeeiveptvealkkegtpykGvLyaglmltkegepkvlefnvRf 292 
                  + d a+++    + + l+ ++ +  +kv G + e      +++   +l + +gi ++e++ +t+peea+++ +++g p ++v+++ + +G    v+++e+e + ++ e+ +       +++vv+ +f+eG  E+ + a+ ++ +v+  + + +h     +  g+  G    + pa+++te   k   ++i  + ++alk       G    +l ++k+g  kv+e n R 
  MMETSP1137-20121227|5179_1 1087 GCDQAIVSVGGQIPNTLALKMGNSDVKVAGTTPEMIDTAEDRNKFSALCDSVGIDQPEWQLLTSPEEATAFCDKVGYP-CLVRPSYVLSGAAMNVAYSEDELKGYLLEAATVS----KEHPVVVSKFIEGArEIDVDAVAQRGRVLIKA-VSEHV----ENAGVHSGDATLMLPAQTLTEAE-KAEVDKITAKLADALKIT-----GPFNMQL-IVKDGTVKVIECNLRA 1299
                  5555555555555555555555566666666666555544444455788999*************************9.999*******************999987665553....578**********5599999999988876555.55553....45678888777777877776554.455567888888888776.....4333444.5667779999999885 PP

>> TIGR02144  LysX_arch: lysine biosynthesis enzyme LysX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.0     0.032       8.1      68     129 ..     568     630 ..     560     648 .. 0.82
   2 !   17.4   0.0   1.6e-06    0.0004      80     185 ..    1120    1222 ..    1095    1259 .. 0.80

  Alignments for each domain:
  == domain 1    score: 3.3 bits;  conditional E-value: 0.032
   TIGR02144  68 leelGvkvin.sseviiacgdKvfttlkLakagvPtPktivafdkeaalklaeelGyPvvlKP 129
                 le+  v+v+  + ++i+a++d+ + + kL++ +  +  ++     +aa+ ++e++G+P++++ 
  MMETSP1137-20121227|5179_1 568 LEKYNVRVLGtQVDAIEATEDRGIFSDKLNEINERIAPSFACNTVDAAIAASEKIGFPLMIRS 630
                 555556665414688999999999999999998888889999999*************99875 PP

  == domain 2    score: 17.4 bits;  conditional E-value: 1.6e-06
   TIGR02144   80 eviiacgdKvfttlkLakagvPtPktivafdkeaalklaeelGyPvvlKPveGsWGrlvskvkdkdeaeallehkevlkgsqlklylvqEyinkpgRDiRvfviGd 185 
                  e+i +++d+   ++     g+ +P++ + +++e+a+   +++GyP +++P     G  ++ + ++de++ +l    +++  + +  +v  +i+   R+i v  + +
  MMETSP1137-20121227|5179_1 1120 EMIDTAEDRNKFSALCDSVGIDQPEWQLLTSPEEATAFCDKVGYPCLVRPSYVLSGAAMNVAYSEDELKGYLLEAATVS--KEHPVVVSKFIEG-AREIDVDAVAQ 1222
                  6778888888888888999*********************************999************999765444433..3455567777764.46665555555 PP

>> TIGR02068  cya_phycin_syn: cyanophycin synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0      0.49   1.2e+02     235     296 ..     610     670 ..     606     681 .. 0.75
   2 !   13.6   0.0     1e-05    0.0026     209     297 ..    1123    1212 ..    1111    1244 .. 0.81

  Alignments for each domain:
  == domain 1    score: -1.9 bits;  conditional E-value: 0.49
   TIGR02068 235 qsaeeaeeaaeelGyPvvikPld..GnhGrGvtiniesreeiesayeaakeesseviverfikG 296
                 +++++a+ a e++G+P++i+     G  G G+  +   + ++ s  ++a   s +++ve+ +kG
  MMETSP1137-20121227|5179_1 610 NTVDAAIAASEKIGFPLMIRSAFalGGLGSGLCYD---KAQLLSMARTALASSPQILVEKSLKG 670
                 5678899999*********9875125566666554...44555666889999999999999998 PP

  == domain 2    score: 13.6 bits;  conditional E-value: 1e-05
   TIGR02068  209 eiasDkeltkklLkaaGvPvPeGtvvqsaeeaeeaaeelGyPvvikPldGnhGrGvtiniesreeiesayeaakees..seviverfikGr 297 
                  + a+D++    l ++ G+  Pe +++ s eea+   +++GyP  ++P     G  + +   s +e++     a+ +s  + v+v +fi+G 
  MMETSP1137-20121227|5179_1 1123 DTAEDRNKFSALCDSVGIDQPEWQLLTSPEEATAFCDKVGYPCLVRPSYVLSGAAMNVAY-SEDELKGYLLEAATVSkeHPVVVSKFIEGA 1212
                  6799999999*************************************9998887766654.45666665566777774467********95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1533 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       152  (0.0370551); expected 82.0 (0.02)
Passed bias filter:                      141  (0.0343735); expected 82.0 (0.02)
Passed Vit filter:                        31  (0.00755729); expected 4.1 (0.001)
Passed Fwd filter:                        16  (0.00390054); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              16  [number of targets reported over threshold]
# CPU time: 1.46u 0.20s 00:00:01.66 Elapsed: 00:00:02.10
# Mc/sec: 963.52
//
Query:       MMETSP1137-20121227|5180_1  [L=276]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.7e-05   22.4   0.0    2.5e-05   21.9   0.0    1.2  1  TIGR00537 hemK_rel_arch: putative methylase
    7.5e-05   20.1   0.0    0.00013   19.4   0.0    1.3  1  TIGR03534 RF_mod_PrmC: protein-(glutamine-N5) methyltransferase, release factor-specific
     0.0059   13.5   0.0     0.0089   12.9   0.0    1.3  1  TIGR00536 hemK_fam: methyltransferase, HemK family
  ------ inclusion threshold ------
      0.028   11.7   0.0      0.041   11.1   0.0    1.2  1  TIGR00406 prmA: ribosomal protein L11 methyltransferase


Domain annotation for each model (and alignments):
>> TIGR00537  hemK_rel_arch: putative methylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.9   0.0   2.5e-08   2.5e-05      21      67 ..     130     177 ..     122     205 .. 0.89

  Alignments for each domain:
  == domain 1    score: 21.9 bits;  conditional E-value: 2.5e-08
   TIGR00537  21 dd.vleiGaGtGlvairlkekgkkivatdinPfavkllkenaklnnve 67 
                  + vle+GaGt    i+++  g  +v+td++ ++  l+  na +nnv+
  MMETSP1137-20121227|5180_1 130 RRrVLEVGAGTCTAGIAAATCGYEVVCTDVASWSLPLATANAHMNNVG 177
                 444*******************************************97 PP

>> TIGR03534  RF_mod_PrmC: protein-(glutamine-N5) methyltransferase, release factor-specific
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.0   1.2e-07   0.00013      85     161 ..     126     206 ..     113     208 .. 0.85

  Alignments for each domain:
  == domain 1    score: 19.4 bits;  conditional E-value: 1.2e-07
   TIGR03534  85 kkkeklkvlDlgtGsGaIalalakelpdakviavDiseeAlkvarkNakrlglke.veflksdl.....lealeekgkfdliv 161
                 +++   +vl++g+G+ + ++a a     ++v+++D+ + +l +a +Na+ +++   v++ + d+     l+ + + g fdli+
  MMETSP1137-20121227|5180_1 126 PREGRRRVLEVGAGTCTAGIAAATC--GYEVVCTDVASWSLPLATANAHMNNVGGlVRVARFDWddddgLKRVAAMGPFDLII 206
                 44556899**999998887776665..9**************************9*********77777677799999***98 PP

>> TIGR00536  hemK_fam: methyltransferase, HemK family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.9   0.0   8.7e-06    0.0089     111     174 ..     126     187 ..     111     207 .. 0.82

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 8.7e-06
   TIGR00536 111 sqeplkhilDlgtGsGcIalalAleipnaeviavDistdalavaeeNaeklkleerveliqsnl 174
                 ++e   ++l++g G+   ++a  ++    ev   D+ +  l +a +Na+ +++ + v++ + ++
  MMETSP1137-20121227|5180_1 126 PREGRRRVLEVGAGTCTAGIA--AATCGYEVVCTDVASWSLPLATANAHMNNVGGLVRVARFDW 187
                 566668899988888666655..555567****************************9999888 PP

>> TIGR00406  prmA: ribosomal protein L11 methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0     4e-05     0.041     160     216 ..     130     185 ..     122     208 .. 0.86

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 4e-05
   TIGR00406 160 dkkviDvGcGSGiLsiaalklgaakvvavDiDplavesarkNlelNqvsdllqvkle 216
                 +++v++vG+G    +iaa+  g + vv  D+ + ++  a  N+++N+v  l++v   
  MMETSP1137-20121227|5180_1 130 RRRVLEVGAGTCTAGIAAATCGYE-VVCTDVASWSLPLATANAHMNNVGGLVRVARF 185
                 5789*****************976.7889*******************999888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (276 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        73  (0.0177962); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.25u 0.16s 00:00:00.41 Elapsed: 00:00:00.64
# Mc/sec: 569.20
//
Query:       MMETSP1137-20121227|5181_1  [L=239]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (239 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        55  (0.0134081); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.12s 00:00:00.32 Elapsed: 00:00:00.32
# Mc/sec: 985.79
//
Query:       MMETSP1137-20121227|5182_1  [L=181]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (181 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       105  (0.0255973); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.17s 00:00:00.33 Elapsed: 00:00:00.36
# Mc/sec: 663.61
//
Query:       MMETSP1137-20121227|5183_1  [L=77]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (77 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        76  (0.0185275); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.17s 00:00:00.29 Elapsed: 00:00:00.27
# Mc/sec: 376.41
//
Query:       MMETSP1137-20121227|5184_1  [L=514]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00013   19.3   0.0    0.00028   18.2   0.0    1.5  2  TIGR00768 rimK_fam: alpha-L-glutamate ligases, RimK family


Domain annotation for each model (and alignments):
>> TIGR00768  rimK_fam: alpha-L-glutamate ligases, RimK family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.0   6.8e-08   0.00028      43     142 ..     161     270 ..     126     278 .. 0.83
   2 ?   -3.8   0.0      0.35   1.4e+03     176     194 ..     355     373 ..     342     379 .. 0.76

  Alignments for each domain:
  == domain 1    score: 18.2 bits;  conditional E-value: 6.8e-08
   TIGR00768  43 ralaeldvvivri.........vssdrglavlraleslGveviNssqaienagdKllssalLakaglplpktlvagseeeakklieeig..fPvvlKpvfGswGklvvlve 142
                 +a +++d++ivr+          s+ +  +++r l++lG++v  s++++e  g K   + ++a+ ++ l +tl++ +eee++k   +     P v+K+ +Gs G+++  ++
  MMETSP1137-20121227|5184_1 161 EAMKQFDAIIVRCnpgqikadgGSQAKFDDAMRGLQKLGIQVWPSPDVMEFMGAKD-ALTKIAHLNIGLEDTLSYYDEEEFAKGFKKTMafQPRVIKQNRGSSGEGIWIIK 270
                 47899999999999999887766677777899******************999996.57899999***************998877766678*************998765 PP

  == domain 2    score: -3.8 bits;  conditional E-value: 0.35
   TIGR00768 176 rdiRvfVvgdevvaaiyri 194
                  + R  +vg e+v+ i++ 
  MMETSP1137-20121227|5184_1 355 GELRYNCVGPELVGIIHKK 373
                 5679999*******99983 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (514 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       121  (0.0294978); expected 82.0 (0.02)
Passed bias filter:                      115  (0.0280351); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.13s 00:00:00.49 Elapsed: 00:00:00.52
# Mc/sec: 1304.66
//
Query:       MMETSP1137-20121227|5185_1  [L=175]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
          1    7.7  12.2       0.21    9.9   0.3    2.6  3  TIGR00531 BCCP: acetyl-CoA carboxylase, biotin carboxyl carrier protein


Domain annotation for each model (and alignments):
>> TIGR00531  BCCP: acetyl-CoA carboxylase, biotin carboxyl carrier protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   1.7    0.0021       8.7      38      67 ..      32      61 ..      23      62 .. 0.86
   2 ?    9.9   0.3   5.1e-05      0.21      13      69 ..      62     120 ..      61     141 .. 0.77
   3 ?   -1.3   0.1      0.14   5.8e+02      55      72 ..     151     168 ..     130     174 .. 0.42

  Alignments for each domain:
  == domain 1    score: 4.6 bits;  conditional E-value: 0.0021
   TIGR00531 38 aakksvlqqaaapvvaqvpavasaavpaaa 67
                +++k v++ aaap++a v+a++ +  pa+a
  MMETSP1137-20121227|5185_1 32 QSEKIVQKDAAAPAQADVQAMHRKXSPAPA 61
                566788999**************9999986 PP

  == domain 2    score: 9.9 bits;  conditional E-value: 5.1e-05
   TIGR00531  13 veesditelelkeeevev.klkkeaaaakksvlqqaaapvvaqvpavasa.avpaaava 69 
                 +++s+it  el+e+e+++ k ++   ++  + l + +ap  a +pav+ a ++pa ++ 
  MMETSP1137-20121227|5185_1  62 MDDSGITVTELDEDEIDLaKFDRSPETIPDARLSAXIAPDAASTPAVSDAkQAPAKEPP 120
                 789************998568999999999999************88765145555442 PP

  == domain 3    score: -1.3 bits;  conditional E-value: 0.14
   TIGR00531  55 vpavasaavpaaavaaea 72 
                 +   a +  paa +a++a
  MMETSP1137-20121227|5185_1 151 ADKDAGQDIPAAPAATDA 168
                 222223333333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (175 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        50  (0.0121892); expected 82.0 (0.02)
Passed bias filter:                       36  (0.00877621); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.18u 0.16s 00:00:00.34 Elapsed: 00:00:00.34
# Mc/sec: 679.36
//
Query:       MMETSP1137-20121227|5186_1  [L=100]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (100 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        37  (0.00901999); expected 82.0 (0.02)
Passed bias filter:                       37  (0.00901999); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.32
# Mc/sec: 412.47
//
Query:       MMETSP1137-20121227|5187_1  [L=673]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.5e-29  100.9   0.1    2.6e-29  100.0   0.1    1.4  1  TIGR01963 PHB_DH: 3-hydroxybutyrate dehydrogenase
    3.1e-19   67.4   0.0    6.1e-19   66.5   0.0    1.4  1  TIGR01829 AcAcCoA_reduct: acetoacetyl-CoA reductase
    4.5e-19   66.9   0.0    7.5e-19   66.2   0.0    1.3  1  TIGR01830 3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase
    1.6e-17   61.6   0.0    3.2e-17   60.6   0.0    1.5  1  TIGR02415 23BDH: acetoin reductases
    1.9e-17   61.5   0.0    3.3e-17   60.7   0.0    1.3  1  TIGR01832 kduD: 2-deoxy-D-gluconate 3-dehydrogenase
    2.4e-15   54.5   1.2    1.8e-14   51.7   0.8    2.2  1  TIGR03971 SDR_subfam_1: oxidoreductase, SDR family
    7.1e-15   52.9   1.0    1.5e-14   51.8   0.7    1.4  1  TIGR03206 benzo_BadH: 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase
    1.2e-10   38.2   1.1    1.8e-10   37.6   0.7    1.2  1  TIGR02632 RhaD_aldol-ADH: rhamnulose-1-phosphate aldolase/alcohol dehydrogenase
    2.3e-09   34.8   0.2      4e-09   34.0   0.1    1.4  1  TIGR01831 fabG_rel: putative 3-oxoacyl-(acyl-carrier-protein) reductase
    1.2e-08   32.6   0.0      4e-08   30.8   0.0    1.8  1  TIGR01500 sepiapter_red: sepiapterin reductase
    2.9e-07   27.8   0.6    5.2e-07   27.0   0.4    1.3  1  TIGR03325 BphB_TodD: cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase
     0.0072   13.6   0.0       0.16    9.2   0.0    2.8  2  TIGR00068 glyox_I: lactoylglutathione lyase


Domain annotation for each model (and alignments):
>> TIGR01963  PHB_DH: 3-hydroxybutyrate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  100.0   0.1   7.7e-32   2.6e-29       2     190 ..      93     276 ..      92     284 .. 0.93

  Alignments for each domain:
  == domain 1    score: 100.0 bits;  conditional E-value: 7.7e-32
   TIGR01963   2 kvalvtGaasGiglaiakelaaaGakvvvndleeeaaeaaakeleeaggevlalkadvtkeeeiadlieavaaefgsldi..LvnnAGiqhvapieefptekfekiiavnltsafhtiraalpimkkqgwGriiniasvhglvasafKsaYvaaKHglvGltKvlAlEvAetgitanaicPgyvrtpLvek 190
                 + +l+tG  +G g+++a++   aG+kvv    +e++a++       a+++++ ++ad+t +e ++++++a+ a++g++ +  LvnnAG+    +++  p++ +e+ +a+n +++++++ a lp +k   +Gr++n++sv+g va +  +aY a+KH+l  ++ vl  E+   ++ + ++ Pg +rtpL e+
  MMETSP1137-20121227|5187_1  93 RCILLTGCDTGFGRHVAQQALDAGFKVVAACYTEAGAATF------ASTTATIVVADLTTAEGVERVVKAALAAAGDAGLfaLVNNAGLCLPGNVDWLPPDAYERSMALNFHAPVKLTYALLPALKS-TRGRVVNVTSVDGVVALPSTAAYSASKHALEAFSDVLRAEMLPWDVNVVVVEPGTMRTPLAEA 276
                 789*************************998888776655......556788899********************99875559*****************************************986.69**********************************************************886 PP

>> TIGR01829  AcAcCoA_reduct: acetoacetyl-CoA reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.5   0.0   1.8e-21   6.1e-19       2     207 ..      94     292 ..      93     306 .. 0.88

  Alignments for each domain:
  == domain 1    score: 66.5 bits;  conditional E-value: 1.8e-21
   TIGR01829   2 valvtGglgGiGtaickrlakdGykvvanvapneerakewlqekevegfdvavvkadvssfeeakaavakveaelGpvdv..lvnnaGitrdavfkkmtkeqWeevidtnlnsvfnvtrpviegmlergfGriinissvnGlkGqfGqanysaakaGliGftkalaqegakkgvtvnviaPGyiatemvkavredvlkkivaqiPvkr 207
                   l+tG+  G G+ ++++  ++G+kvva++++++ +a+ ++ ++ +     ++v ad+++ e  +++v+   a+ G+  +  lvnnaG+     +  +  +++e  ++ n+++  ++t  ++ +++  + Gr++n++sv+G+      a ysa+k  l  f+  l +e    +v v v+ PG + t++ +a  +  l++   + P +r
  MMETSP1137-20121227|5187_1  94 CILLTGCDTGFGRHVAQQALDAGFKVVAACYTEAGAAT-FA-STTA-----TIVVADLTTAEGVERVVKAALAAAGDAGLfaLVNNAGLCLPGNVDWLPPDAYERSMALNFHAPVKLTYALLPALK-STRGRVVNVTSVDGVVALPSTAAYSASKHALEAFSDVLRAEMLPWDVNVVVVEPGTMRTPLAEAFADGWLRSFR-EAPAER 292
                 5699***************************7765543.33.3333.....46789*******************99775449***************************************9986.568*************************************************************9988777654.345555 PP

>> TIGR01830  3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.2   0.0   2.2e-21   7.5e-19       2     193 ..      96     281 ..      95     301 .. 0.87

  Alignments for each domain:
  == domain 1    score: 66.2 bits;  conditional E-value: 2.2e-21
   TIGR01830   2 lvtGasrgiGkaiakklakegakvviterskeekaeelaeelkeagvkaaavkldvsdeeevkelveeveeelge..idilvnnAGitrDklllrmkeedwdevikvnLkgvfnvtkavlkkmikkrsGriinissvvgllGnagqanYaasKaGligltkslakElasrnitvnavaPGfietdmteklsekv 193
                 l+tG   g G+ +a++  ++g+kvv     +e+     a+++++  ++a++v++d++ +e v+++v+++ +++g+  +  lvnnAG+   + +  +  + +++ +++n ++  ++t a l ++ k+ +Gr++n++sv g++  +  a Y+asK  l +++  l  E+   +++v +v PG ++t++ e++ +  
  MMETSP1137-20121227|5187_1  96 LLTGCDTGFGRHVAQQALDAGFKVVAACY-TEAG----AATFAS--TTATIVVADLTTAEGVERVVKAALAAAGDagLFALVNNAGLCLPGNVDWLPPDAYERSMALNFHAPVKLTYALLPAL-KSTRGRVVNVTSVDGVVALPSTAAYSASKHALEAFSDVLRAEMLPWDVNVVVVEPGTMRTPLAEAFADGW 281
                 89**********************99955.3333....333333..357799******************99996125679***********************************9988776.6678**********************************************************99987765 PP

>> TIGR02415  23BDH: acetoin reductases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.6   0.0   9.3e-20   3.2e-17       3     191 ..      95     277 ..      93     296 .. 0.91

  Alignments for each domain:
  == domain 1    score: 60.6 bits;  conditional E-value: 9.3e-20
   TIGR02415   3 alvtGaaqGiGkaiaerLakdGfavavadlneetaketakelkekgtkavavkldvsdkseveeaveqaveklGe..ldvlvnnaGvalvtpileiteeeleklynvnvkgvlfGiqaaaekfkklkhkGkiinaasiagvegspelsaysstkfavrgltqtaakeLakkgitvnayaPGivktemreei 191
                  l+tG+  G G+ +a++  + Gf+v+ a + e+ a+  a+      t a +v++d+++ + ve++v+ a +  G+  l  lvnnaG++l   ++ + ++  e+  ++n ++ +    a   ++k   ++G+++n +s+ gv++ p  +ays++k+a+ ++  +   e+ +  + v    PG+++t++ e  
  MMETSP1137-20121227|5187_1  95 ILLTGCDTGFGRHVAQQALDAGFKVVAACYTEAGAATFAS------TTATIVVADLTTAEGVERVVKAALAAAGDagLFALVNNAGLCLPGNVDWLPPDAYERSMALNFHAPVKLTYALLPALKS--TRGRVVNVTSVDGVVALPSTAAYSASKHALEAFSDVLRAEMLPWDVNVVVVEPGTMRTPLAEAF 277
                 689*****************************99987664......68999******************999997335679****************************9988777777777764..68*********************************************************98865 PP

>> TIGR01832  kduD: 2-deoxy-D-gluconate 3-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.7   0.0   9.5e-20   3.3e-17       4     194 ..      91     277 ..      89     295 .. 0.88

  Alignments for each domain:
  == domain 1    score: 60.7 bits;  conditional E-value: 9.5e-20
   TIGR01832   4 eGkvalvtGantGlGqgiavglaeaGadivgvgiselsetqekvealGrkflslkadladeeaakalvdeaveeag..kidilvnnaGiirredavefsekdwddvlnvnlkavfllsqavakkllkqGrkgkiiniasllsfqGGirvpsytasksavaGltkllanewakkginvnaiaPGyletnnteal 194
                 +G+ +l+tG++tG+G+ +a    +aG ++v++  +e+  +    +   ++++ + adl+  e+++++v+ a+++ag   +  lvnnaG+    +   ++   ++  + +n++a   l+ a+   +lk+  +g+++n++s+         ++y+ask+a+  ++ +l +e+   ++nv  + PG + t  +ea+
  MMETSP1137-20121227|5187_1  91 NGRCILLTGCDTGFGRHVAQQALDAGFKVVAACYTEAGAA----TFASTTATIVVADLTTAEGVERVVKAALAAAGdaGLFALVNNAGLCLPGNVDWLPPDAYERSMALNFHAPVKLTYALLP-ALKST-RGRVVNVTSVDGVVALPSTAAYSASKHALEAFSDVLRAEMLPWDVNVVVVEPGTMRTPLAEAF 277
                 69*****************************998765432....33456678899*******************99445778***********9999******************99998765.56666.8*******9988887778889***********************************9877766 PP

>> TIGR03971  SDR_subfam_1: oxidoreductase, SDR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.7   0.8   5.2e-17   1.8e-14      67     205 ..     137     275 ..      91     295 .. 0.91

  Alignments for each domain:
  == domain 1    score: 51.7 bits;  conditional E-value: 5.2e-17
   TIGR03971  67 vlarkadvrkleelravveegveefGr..ldvvvanaGvlsygrafelseeqWdtvldvnlkGvWktvkavvPalierknGGsiiivssvaglkalpglahyaaakhGlvgltktlanelaeygirvnsihPtsvdtamie 205
                 + + +ad+ + e ++ vv+ +++  G   l  +v+naG+   g++  l +++++  + +n++   k   a +Pal   +  G ++ v+sv g++alp +a y+a+kh l ++ + l  e+ ++++ v +++P +++t++ e
  MMETSP1137-20121227|5187_1 137 ATIVVADLTTAEGVERVVKAALAAAGDagLFALVNNAGLCLPGNVDWLPPDAYERSMALNFHAPVKLTYALLPALKSTR--GRVVNVTSVDGVVALPSTAAYSASKHALEAFSDVLRAEMLPWDVNVVVVEPGTMRTPLAE 275
                 45567999999**************97335679*****************************************98777..9*******************************************************9987 PP

>> TIGR03206  benzo_BadH: 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.8   0.7   4.3e-17   1.5e-14       6     194 ..      95     278 ..      90     287 .. 0.85

  Alignments for each domain:
  == domain 1    score: 51.8 bits;  conditional E-value: 4.3e-17
   TIGR03206   6 aivtgggggiggaicrrfaeegakvavldlnaeaaekvaaairekggkaeavavditdrasvdaavaaaeealgpvdv..lvnnagwdvlkpflktekaewerliainltgalymhhavlkgmverkagrivniasdaarvgssgeavyaackgglvafsktlarelarhgitvnvvcpgptdtalledvk 194
                 +++tg   g g  + ++  + g kv        a+ + a+a + +  +a  v +d+t  + v+  v aa  a g + +  lvnnag    ++     +  +er +a+n+   + + +a+l+ + +  +gr+vn++s  + v     a y+a k  l afs  l  e+   ++ v vv pg   t+l e ++
  MMETSP1137-20121227|5187_1  95 ILLTGCDTGFGRHVAQQALDAGFKVVA------ACYTEAGAATFASTTATIVVADLTTAEGVERVVKAALAAAGDAGLfaLVNNAGLCLPGNVDWLPPDAYERSMALNFHAPVKLTYALLPAL-KSTRGRVVNVTSVDGVVALPSTAAYSASKHALEAFSDVLRAEMLPWDVNVVVVEPGTMRTPLAEAFA 278
                 556666666666666666666655543......344445555556678999******************999998875449****************************************97.5678*********************************************************988765 PP

>> TIGR02632  RhaD_aldol-ADH: rhamnulose-1-phosphate aldolase/alcohol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.6   0.7   5.4e-13   1.8e-10     414     599 ..      92     269 ..      85     306 .. 0.85

  Alignments for each domain:
  == domain 1    score: 37.6 bits;  conditional E-value: 5.4e-13
   TIGR02632 414 rrvalvtGgasGiGrevarrlvdeGahvvladldaeaaeavaaelvdkfGadkavalkldvtdeeavkaafaevalayG..GvdivvnnaGiavskpleeteleeWdlnldilatGyflvareaarllrkqglggnlvfiasknavvakknalaysaakaaeahlvrllaielaelgirvntvaPdav 599
                 +r +l+tG  +G Gr va++  d G  vv a   ++ a++        f + +a  +++d+t  e v+ +++++  a G  G+ ++vnnaG+    +++    + ++++++++      +    a l   +++ g +v ++s+++vva +++ aysa+k a      +l +e+ +  + v  v+P ++
  MMETSP1137-20121227|5187_1  92 GRCILLTGCDTGFGRHVAQQALDAGFKVVAACYTEAGAAT--------FASTTATIVVADLTTAEGVERVVKAALAAAGdaGLFALVNNAGLCLPGNVDWLPPDAYERSMALNFHAPVKL--TYALLPALKSTRGRVVNVTSVDGVVALPSTAAYSASKHALEAFSDVLRAEMLPWDVNVVVVEPGTM 269
                 5889************************998776555543........34566788999****9999999999888877669999***********************999998766444..445555567899***************************999*******************99876 PP

>> TIGR01831  fabG_rel: putative 3-oxoacyl-(acyl-carrier-protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.0   0.1   1.2e-11     4e-09       1     193 [.      95     280 ..      95     299 .. 0.83

  Alignments for each domain:
  == domain 1    score: 34.0 bits;  conditional E-value: 1.2e-11
   TIGR01831   1 vlvtgasrgigraialklaadgfeiavhyrsdradaeesvaairaqggnarllkfdvadrvavrevleadiaehg..ayygvvlnagiardaafpalseedwdavietnldgfynvihplvmpmirarkggriitlasvsgvmgnrgqvnysaakagligatkalavelakrkitvnciapglidtemvaevekd 193
                 +l+tg+  g gr +a++   +gf++   + +++ +a    a+     ++a ++  d++  + v  v++a +a+ g    + +v nag+        l  + ++  +  n+ +   +    ++p ++  + gr++ ++sv gv+       ysa+k  l   +  l  e+    + v  + pg + t + +   + 
  MMETSP1137-20121227|5187_1  95 ILLTGCDTGFGRHVAQQALDAGFKVVAACYTEAGAAT--FAS-----TTATIVVADLTTAEGVERVVKAALAAAGdaGLFALVNNAGLCLPGNVDWLPPDAYERSMALNFHAPVKLTY-ALLPALKSTR-GRVVNVTSVDGVVALPSTAAYSASKHALEAFSDVLRAEMLPWDVNVVVVEPGTMRTPLAEAFADG 280
                 689***********************99998876654..333.....455666667777777777777777766632589***************************99999887665.5678888765.7*****************************************************99988776655 PP

>> TIGR01500  sepiapter_red: sepiapterin reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.8   0.0   1.2e-10     4e-08       3     200 ..      95     273 ..      93     279 .. 0.84

  Alignments for each domain:
  == domain 1    score: 30.8 bits;  conditional E-value: 1.2e-10
   TIGR01500   3 llvtGasrGfGrelaqelakrlkaegsvlvLlaRndeaLkeskaeieaevsalsvdlvsldleaakdvedllkaleesikkeeyerillinnaGtlgdvskrekelsDsknvqkyydsnvtslvvltsellkklkelqglektvvnlssLcaikpfkswalYCaskaaRdmffqvLaleek.edvkvLnYapGvlDtdm 200
                 +l+tG   GfGr++aq+        g ++v      ea   + a+ +a         v +dl +a++ve ++ka ++ ++  ++    l+nnaG       ++++    +  ++  ++n  + v lt  ll +lk   +    vvn+ s+  + +++s a Y ask a + f  vL  e    dv v+   pG + t +
  MMETSP1137-20121227|5187_1  95 ILLTGCDTGFGRHVAQQALD----AGFKVVAACYT-EAGAATFASTTA-------TIVVADLTTAEGVERVVKAALAAAGDAGL--FALVNNAGLCL---PGNVDWLPPDAYERSMALNFHAPVKLTYALLPALK---STRGRVVNVTSVDGVVALPSTAAYSASKHALEAFSDVLRAEMLpWDVNVVVVEPGTMRTPL 273
                 699*************9777....67777755443.333333333333.......44568***************999999988..5789****754...355667788999***********************...88899************************************99889999999999998865 PP

>> TIGR03325  BphB_TodD: cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.0   0.4   1.5e-09   5.2e-07       5     191 ..      92     273 ..      90     280 .. 0.83

  Alignments for each domain:
  == domain 1    score: 27.0 bits;  conditional E-value: 1.5e-09
   TIGR03325   5 devvlvtggasglgralvdrfvaegarvavldksaagleeleaahgdkvvgvegdvrllddhkeavarcveafgk..ldtlipnagiwdystalvdipddrideafdevfeinvkgyllavkaalpalvasrgsviftvsnagfypngggalytaakhavvglvkelayelapy.vrvngvapgglstdl 191
                 ++ +l+tg  +g+gr + ++ +  g +v     ++ag   + ++ +  vv+   d  + +  ++ v+  ++a g   l +l++nag+     ++  +p d     ++  + +n ++ ++   a lpal ++rg v+   s  g  +    a y+a+kha+  +   l  e+ p  v v  v pg + t l
  MMETSP1137-20121227|5187_1  92 GRCILLTGCDTGFGRHVAQQALDAGFKVVAACYTEAGAATFASTTATIVVA---DLTTAEGVERVVKAALAAAGDagLFALVNNAGLCL-PGNVDWLPPDA----YERSMALNFHAPVKLTYALLPALKSTRGRVVNVTSVDGVVALPSTAAYSASKHALEAFSDVLRAEMLPWdVNVVVVEPGTMRTPL 273
                 56799***********************999999***99999988777665...777777777777777777775236789*****963.33344467765....555566666666777889***********************************************999549999*******9877 PP

>> TIGR00068  glyox_I: lactoylglutathione lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.2   0.0   0.00047      0.16      19     142 ..     391     509 ..     387     513 .. 0.77
   2 ?    0.1   0.0      0.32   1.1e+02      89     111 ..     616     638 ..     589     653 .. 0.83

  Alignments for each domain:
  == domain 1    score: 9.2 bits;  conditional E-value: 0.00047
   TIGR00068  19 lhtmlrvgdldksldfytevlGmkllrkkdfpeekfslaflgyedessaavieL.tynwgtekydlGn....gfGhiaiavddvykacervkakGgkvvrepgpvkggtkviafvkDPDGykiellekk 142
                  h+ + v  l++sl fy + lGm+      fp+      fl+ + +     + L   n  +++   G     g   + i   dv + + r+ ++G + +      ++ + +ia   DPD y + l+e k
  MMETSP1137-20121227|5187_1 391 SHVTVDVSSLKASLPFYEK-LGMQ-----AFPSSVAGAQFLAAGATGRRQPLLLlRENATMTE--RGPtwlaGMPRLCIYSTDVDADVRRLAEAGLEPMAPV--AEDAMAKIAAYYDPDRYVVYLIEFK 509
                 6888889999999999976.8997.....4777788888999988877665554045544443..333345589999******************9977555..78899**************999866 PP

  == domain 2    score: 0.1 bits;  conditional E-value: 0.32
   TIGR00068  89 hiaiavddvykacervkakGgkv 111
                  ++iav+dv +a ++  a+G +v
  MMETSP1137-20121227|5187_1 616 SVTIAVNDVNAALDAAAAAGMRV 638
                 57899*********999999887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (673 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       262  (0.0638713); expected 82.0 (0.02)
Passed bias filter:                      143  (0.034861); expected 82.0 (0.02)
Passed Vit filter:                        27  (0.00658216); expected 4.1 (0.001)
Passed Fwd filter:                        12  (0.0029254); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.56u 0.17s 00:00:00.73 Elapsed: 00:00:00.77
# Mc/sec: 1153.62
//
Query:       MMETSP1137-20121227|5188_1  [L=243]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (243 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        96  (0.0234032); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.12s 00:00:00.32 Elapsed: 00:00:00.33
# Mc/sec: 971.92
//
Query:       MMETSP1137-20121227|5189_1  [L=403]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (403 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       235  (0.0572891); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.13s 00:00:00.43 Elapsed: 00:00:00.44
# Mc/sec: 1208.90
//
Query:       MMETSP1137-20121227|5190_1  [L=299]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        1.2    6.1   6.8        1.2    6.1   4.2    1.3  1  TIGR01347 sucB: dihydrolipoyllysine-residue succinyltransferase, E2 component of oxoglutarate dehydrogenase (succinyl-transferring) complex


Domain annotation for each model (and alignments):
>> TIGR01347  sucB: dihydrolipoyllysine-residue succinyltransferase, E2 component of oxoglutarate dehydrogenase (succinyl-transferring) complex
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   4.2   0.00029       1.2      78     185 ..     158     264 ..     131     289 .. 0.68

  Alignments for each domain:
  == domain 1    score: 6.1 bits;  conditional E-value: 0.00029
   TIGR01347  78 saaaeaasekskeekeekaaakaekakeaaekkkalspaarklakeegidleavektkktgrvtkedivkkeekkasaakeaaakaakaaenaatrseeRvkmtRlrq 185
                 s +ae+++e+++e+++e+aa+ a++++ aa+++  +sp+ +  a++++ +++++ek    g v+++d ++++e+  +a +ea+a++++a++++ + +      tR + 
  MMETSP1137-20121227|5190_1 158 SRTAERTTEAQQETDAERAAEPAAAEP-AATEQGLSSPIDAWFAAQSVEAQSRLEKLYGMGVVKRDDPIARQERYVKAVNEAHARQKEATQTMVQNVRIPGSYTRPKG 264
                 445556666666667775555555444.4555689999999999999999***************9999999997666666665555544444333333334455555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (299 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       124  (0.0302292); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.26u 0.15s 00:00:00.41 Elapsed: 00:00:00.39
# Mc/sec: 1011.92
//
Query:       MMETSP1137-20121227|5191_1  [L=145]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (145 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        56  (0.0136519); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.14s 00:00:00.30 Elapsed: 00:00:00.55
# Mc/sec: 347.97
//
Query:       MMETSP1137-20121227|5192_1  [L=334]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (334 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       219  (0.0533886); expected 82.0 (0.02)
Passed bias filter:                      165  (0.0402243); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.16s 00:00:00.46 Elapsed: 00:00:00.39
# Mc/sec: 1130.37
//
Query:       MMETSP1137-20121227|5193_1  [L=1416]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1416 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       171  (0.041687); expected 82.0 (0.02)
Passed bias filter:                       42  (0.0102389); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.80u 0.16s 00:00:00.96 Elapsed: 00:00:00.66
# Mc/sec: 2831.77
//
Query:       MMETSP1137-20121227|5194_1  [L=69]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (69 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        32  (0.00780107); expected 82.0 (0.02)
Passed bias filter:                       31  (0.00755729); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.26
# Mc/sec: 350.28
//
Query:       MMETSP1137-20121227|5195_1  [L=689]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (689 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       144  (0.0351048); expected 82.0 (0.02)
Passed bias filter:                       99  (0.0241346); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.47u 0.19s 00:00:00.65 Elapsed: 00:00:00.72
# Mc/sec: 1263.06
//
Query:       MMETSP1137-20121227|5196_1  [L=118]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      5e-20   70.0   5.1    5.5e-20   69.8   3.5    1.0  1  TIGR00803 nst: UDP-galactose transporter


Domain annotation for each model (and alignments):
>> TIGR00803  nst: UDP-galactose transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.8   3.5   1.3e-23   5.5e-20     119     222 .]       2     104 ..       1     104 [. 0.98

  Alignments for each domain:
  == domain 1    score: 69.8 bits;  conditional E-value: 1.3e-23
   TIGR00803 119 nlqlplfgllvtfvvlllsdgslisnkgffigyttavwivvllnvvgglcvglvvkyadnttksivlalsiilslllsvrlfdaklsltfalgvilvflatllY 222
                 n+ql+lf+l      + l+d   i+  g f+g t avw+vvll+++ggl+v++v+kyadn++k  ++a++i+l  lls+ l++   sl f+ g+ lv++++llY
  MMETSP1137-20121227|5196_1   2 NIQLGLFSLPQ-TAAMTLTDLPKIAAHGLFVGFTPAVWLVVLLKALGGLIVAAVIKYADNILKTYATAVAIVLTCLLSIPLYGTIPSLAFMQGMALVVASILLY 104
                 89******999.7888999************************************************************************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (118 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       221  (0.0538762); expected 82.0 (0.02)
Passed bias filter:                      104  (0.0253535); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.17u 0.17s 00:00:00.34 Elapsed: 00:00:00.38
# Mc/sec: 409.86
//
Query:       MMETSP1137-20121227|5197_1  [L=340]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (340 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       105  (0.0255973); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.14s 00:00:00.39 Elapsed: 00:00:00.41
# Mc/sec: 1094.54
//
Query:       MMETSP1137-20121227|5198_1  [L=195]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (195 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       118  (0.0287665); expected 82.0 (0.02)
Passed bias filter:                      106  (0.0258411); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.14s 00:00:00.33 Elapsed: 00:00:00.34
# Mc/sec: 757.00
//
Query:       MMETSP1137-20121227|5200_1  [L=423]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (423 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       137  (0.0333983); expected 82.0 (0.02)
Passed bias filter:                      105  (0.0255973); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.14s 00:00:00.46 Elapsed: 00:00:00.44
# Mc/sec: 1268.90
//
Query:       MMETSP1137-20121227|5201_1  [L=100]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (100 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        91  (0.0221843); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.14s 00:00:00.27 Elapsed: 00:00:00.27
# Mc/sec: 488.85
//
Query:       MMETSP1137-20121227|5202_1  [L=97]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (97 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        42  (0.0102389); expected 82.0 (0.02)
Passed bias filter:                       39  (0.00950756); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.14s 00:00:00.27 Elapsed: 00:00:00.32
# Mc/sec: 400.09
//
Query:       MMETSP1137-20121227|5203_1  [L=293]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.6e-54  182.9   0.9    1.9e-54  182.7   0.6    1.0  1  TIGR00419 tim: triose-phosphate isomerase


Domain annotation for each model (and alignments):
>> TIGR00419  tim: triose-phosphate isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  182.7   0.6   4.7e-58   1.9e-54       2     227 ..      47     281 ..      46     282 .. 0.94

  Alignments for each domain:
  == domain 1    score: 182.7 bits;  conditional E-value: 4.7e-58
   TIGR00419   2 viinfKlnesvgkvelevaklaeevaseagvevavappfvdldvvkdeve.seiqvaAqnvdavksGaftGeisAemlkdlGakgvligHsErRsllkeadeliekkvarlkelglksvvCvgetleereaartinnvatt.aaaaA......lepdvvAvEPveliGtGkpvskAeaevveksvrdhlkk.vskevaesvrvlyGasvtaaedaelaaqldvdGvLlasavlka 227
                 + +n+K+n  + +   +   +a+   + +gv vav +p+ ++  vk+++  s++ ++Aq++   +sGa+t  +s  mlk +G+ +vl gHsErR+++  +de i+kkv ++ + glk ++C+ge +eere+++t+ +  t+ ++  A      l++ v+A+EPv++iGtG ++++  a++ ++ vr ++++  s+  ae ++++yG+sv+ ++  +l+a +d+dG+L+++a+l a
  MMETSP1137-20121227|5203_1  47 MAGNWKMNTVLDEAVALAKAVAAASEKADGVDVAVCVPYPFIVPVKEALAgSKVGLGAQDCYYEESGAYTAAVSTSMLKSVGCDYVLAGHSERRAIFGDTDEDINKKVLKILAEGLKCILCIGELKEERESGETFSVCDTQlTKGLAgvseaqLKDIVIAYEPVWAIGTGLTATPELAQETHEYVRKWFSEnYSPAAAEAMIIQYGGSVKDSNVDDLMACPDIDGALVGGASLEA 281
                 679*****999888877777888888889********************99*******************************************************************************99999988776344555678888************************************99899**************************************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (293 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       123  (0.0299854); expected 82.0 (0.02)
Passed bias filter:                      100  (0.0243784); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.24u 0.15s 00:00:00.39 Elapsed: 00:00:00.35
# Mc/sec: 1104.94
//
Query:       MMETSP1137-20121227|5204_1  [L=525]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.1e-33  113.6   0.0    3.3e-33  112.9   0.0    1.2  1  TIGR03413 GSH_gloB: hydroxyacylglutathione hydrolase
    3.9e-11   41.0   0.0    0.00012   20.2   0.0    2.4  2  TIGR02981 phageshock_pspE: phage shock operon rhodanese PspE


Domain annotation for each model (and alignments):
>> TIGR03413  GSH_gloB: hydroxyacylglutathione hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  112.9   0.0   1.6e-36   3.3e-33      10     207 ..     287     492 ..     284     500 .. 0.86

  Alignments for each domain:
  == domain 1    score: 112.9 bits;  conditional E-value: 1.6e-36
   TIGR03413  10 Nyiwllkdeks.eavvvDpgeaep..vlealeekglkleaillTHhHaDHvggvaellekfpvkvvgpaeeripgltkevkegdevel..lelevevlevpGHtlgHiayyleeekvlFcgDtLfsaGCGr..lfegtaeqmlesl.qklaaLpeetkvycaHEYtlsNlrFalavepenealkerlkevealrakgkptlPstla 207
                  y ++l d+k+ ea+++Dp  ++    le+++++gl+l++ l+TH HaDH+ g+ el+++++    + ++ + +++++ +keg+++ +  ++  ++vl++pGHt+g +++++e  +++F+gD L+  GCGr    eg+a+++++s+ +kl +Lp++t vy+aH+Y  +  +  ++ + +n+ l++  +e ++  a+ ++  P+++a
  MMETSP1137-20121227|5204_1 287 TYTYILADSKTkEAIIIDPVLEQVdrDLEVISSQGLTLTQALNTHCHADHITGTGELKKRVGGLRSAISAASGAKADVMLKEGESICWsdGRPLLRVLSTPGHTNGCVSFVCEPLGAVFTGDVLLIGGCGRtdFQEGSAADLYDSVhNKLFTLPDDTIVYPAHDYKGRLRSTIKTEKITNPRLAKSKEEFAQIMANLNLPYPAQIA 492
                 599****99999*******87654116899********************************555555556677889***********5555669************************************54479*********9459****************87766666666778999999998888888887777777765 PP

>> TIGR02981  phageshock_pspE: phage shock operon rhodanese PspE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.0   2.3e-07   0.00046      34      89 ..      41      98 ..      23     104 .. 0.87
   2 !   20.2   0.0   5.6e-08   0.00012      35      92 ..     189     248 ..     170     256 .. 0.81

  Alignments for each domain:
  == domain 1    score: 18.3 bits;  conditional E-value: 2.3e-07
   TIGR02981 34 hvqgainiplkevkeriet.vvp.dkndtvklycnagrqsgqakdillemgythvena 89
                 vqg+i  p+     ++ t ++p dk  t+ ++c+ g ++g+a   l  +gyt v n 
  MMETSP1137-20121227|5204_1 41 MVQGSISAPFDMATGQLPTeALPeDKAATLVVHCKVGGRAGKAAAYLQSIGYTDVVNX 98
                69********99999987634554899****************************995 PP

  == domain 2    score: 20.2 bits;  conditional E-value: 5.6e-08
   TIGR02981  35 vqgainiplkevkerie.tvvp.dkndtvklycnagrqsgqakdillemgythvenaggl 92 
                 v+g+i  p    ++ +  ++ p dk  t+ l+cn+gr+   a  +l e gy    nagg 
  MMETSP1137-20121227|5204_1 189 VDGSISAPWDRANKTMPlSAFPeDKTATIVLHCNSGRRVNAAVPFLKEKGYINLLNAGGP 248
                 66777777766655543144443899********************************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (525 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       106  (0.0258411); expected 82.0 (0.02)
Passed bias filter:                      100  (0.0243784); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.37u 0.17s 00:00:00.54 Elapsed: 00:00:00.37
# Mc/sec: 1872.82
//
Query:       MMETSP1137-20121227|5205_1  [L=455]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.2e-26   89.7   2.6    5.2e-26   89.7   1.8    2.2  2  TIGR02349 DnaJ_bact: chaperone protein DnaJ
    1.9e-16   57.4   2.1    2.8e-16   56.9   1.5    1.1  1  TIGR03835 termin_org_DnaJ: terminal organelle assembly protein TopJ
    9.6e-06   21.5   1.4    9.6e-06   21.5   1.0    1.7  1  TIGR02917 PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein
    0.00025   18.5   5.3     0.0097   13.3   1.3    2.8  3  TIGR02521 type_IV_pilW: type IV pilus biogenesis/stability protein PilW
    0.00026   19.4   3.7      0.086   11.3   0.2    3.5  4  TIGR02795 tol_pal_ybgF: tol-pal system protein YbgF
     0.0019   15.8   1.1       0.24    9.0   0.0    2.8  2  TIGR02552 LcrH_SycD: type III secretion low calcium response chaperone LcrH/SycD
  ------ inclusion threshold ------
        2.5    4.1   7.4        3.1    3.8   5.1    1.1  1  TIGR00934 2a38euk: potassium uptake protein, Trk family


Domain annotation for each model (and alignments):
>> TIGR02349  DnaJ_bact: chaperone protein DnaJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -9.0   6.4         7   4.1e+03     145     175 ..      68     102 ..      59     139 .. 0.53
   2 !   89.7   1.8   8.9e-29   5.2e-26       1      82 [.     358     439 ..     358     454 .. 0.84

  Alignments for each domain:
  == domain 1    score: -9.0 bits;  conditional E-value: 7
   TIGR02349 145 kCetCkGsGakkgskl....ktCktCgGtGqvrkq 175
                 +C +C+ sGa + +++    ++ ++C+ +G+ + q
  MMETSP1137-20121227|5205_1  68 TCGRCSDSGAGSVDDIciswRQTSDCSASGKRQPQ 102
                 45555444444444321111333444444443333 PP

  == domain 2    score: 89.7 bits;  conditional E-value: 8.9e-29
   TIGR02349   1 dYYeiLgvskdAseeeikkAYrklakkyHPDrnkg.ekeaeekfkeineAyevLsdeekraqYDqfghagleggaggggagfe 82 
                 d+Y++L vs++++++eik+AY kla +yHPD+n+  +++ae+kfk ++eAyevLsde+kr++YD  g++   ++++++++g++
  MMETSP1137-20121227|5205_1 358 DHYKVLQVSRSSTSREIKRAYHKLAVEYHPDKNPTdREAAEAKFKLVAEAYEVLSDEDKRRRYDA-GEDLSGNEEQQQQQGQR 439
                 89*******************************983566899**********************9.88777766555444433 PP

>> TIGR03835  termin_org_DnaJ: terminal organelle assembly protein TopJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.9   1.5   4.7e-19   2.8e-16       2      65 ..     357     422 ..     356     437 .. 0.89

  Alignments for each domain:
  == domain 1    score: 56.9 bits;  conditional E-value: 4.7e-19
   TIGR03835   2 rDyyevLgidrDadeqeikkafrkLakkyhPDrnka..adaakifaeineandvLsnPkkraryDk 65 
                  D+y vL+++r +  +eik+a+ kLa  yhPD+n      a+  f+ + ea++vLs+ +kr ryD 
  MMETSP1137-20121227|5205_1 357 HDHYKVLQVSRSSTSREIKRAYHKLAVEYHPDKNPTdrEAAEAKFKLVAEAYEVLSDEDKRRRYDA 422
                 59********************************7665667789*********************5 PP

>> TIGR02917  PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.5   1.0   1.6e-08   9.6e-06     647     804 ..     185     338 ..     169     345 .. 0.84

  Alignments for each domain:
  == domain 1    score: 21.5 bits;  conditional E-value: 1.6e-08
   TIGR02917 647 vaknkakAltslkkaLelkpdnteaqlllaqLlleekrleeAlkllkelekqkpkaalgfeleGdlal....rqkdykaAiqaykkalkrapssqtvikLae....allasgntaeAaktleawLkehpkdavlrtalAelylaekdedkAakhYqtvvkkapdna 804
                 v+ n++ Al+  ++aL+l+p++ e +           + ++A+kl+k lek  ++  +g e+eG+       r+ +y++A q +  al++ p s   + L +       +++++ e+ k+ ++  +++ ++a+ +++lAe +l +++ ++A++ Y+ + ++ + n 
  MMETSP1137-20121227|5205_1 185 VMGNTELALRHFREALKLDPEHQECK----------ADYKQAKKLSKILEK--IEGVMGKEVEGKGRQkqleRDDQYEEARQLLSDALELLPPSVYRASLYRdlciCNTKTRRQDESLKVCTKHSEHDSQSAASNLLLAEALLLNEKFEEAISTYRRIIEQDEHNK 338
                 7889999**************88876..........57899********96..67888888888654311125689****************996666665511115678999**********************************************9998875 PP

>> TIGR02521  type_IV_pilW: type IV pilus biogenesis/stability protein PilW
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.1   0.0    0.0053       3.1      78     100 ..     186     208 ..     171     214 .. 0.79
   2 !   13.3   1.3   1.7e-05    0.0097     113     205 ..     247     340 ..     242     368 .. 0.84
   3 ?    0.2   0.2      0.16        95     115     180 ..     337     401 ..     331     411 .. 0.65

  Alignments for each domain:
  == domain 1    score: 5.1 bits;  conditional E-value: 0.0053
   TIGR02521  78 lgelekAeesfrkAltlkpnngd 100
                 +g++e A ++fr+Al+l+p+  +
  MMETSP1137-20121227|5205_1 186 MGNTELALRHFREALKLDPEHQE 208
                 67888899999999999988766 PP

  == domain 2    score: 13.3 bits;  conditional E-value: 1.7e-05
   TIGR02521 113 kkyeeAeqqfeaAied.pkYeqparsyeNaglcalkagdtekaekyltralkidpkrpesllelaelklkkgqyaeAralleryqqtveqtaes 205
                  +yeeA q ++ A+e  p    +a+ y  + +c  k  ++++  k  t+  + d +++ s+l lae  l + +  eA + + r  +  e+++e+
  MMETSP1137-20121227|5205_1 247 DQYEEARQLLSDALELlPPSVYRASLYRDLCICNTKTRRQDESLKVCTKHSEHDSQSAASNLLLAEALLLNEKFEEAISTYRRIIEQDEHNKEA 340
                 59************973457778999*******************************************************9987776655554 PP

  == domain 3    score: 0.2 bits;  conditional E-value: 0.16
   TIGR02521 115 yeeAeqqfeaAiedpkYeqparsyeNaglcalkagdtekaekyltralkidpkrpesllelaelkl 180
                  +eA q +++A +  k  ++ + y+ +  ++++   +e  ++y + a+++ p++ ++ +e ae k+
  MMETSP1137-20121227|5205_1 337 NKEARQGLQQAEKLLKRSKEHDHYKVLQ-VSRSSTSREIKRAYHKLAVEYHPDKNPTDREAAEAKF 401
                 5566666666666666666666665443.4556666666677777777777777777777776665 PP

>> TIGR02795  tol_pal_ybgF: tol-pal system protein YbgF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.1   0.0     0.006       3.5      43      84 ..     177     217 ..     173     228 .. 0.80
   2 ?   -1.0   0.0      0.94   5.5e+02      14      39 ..     245     270 ..     234     273 .. 0.78
   3 !   11.3   0.2   0.00015     0.086      37      98 ..     302     362 ..     290     385 .. 0.79
   4 ?   -0.5   0.0      0.68     4e+02      29      49 ..     387     408 ..     373     422 .. 0.71

  Alignments for each domain:
  == domain 1    score: 6.1 bits;  conditional E-value: 0.006
   TIGR02795  43 YwlGealyakkkykdAakaflevvkkypksekapdallklge 84 
                 Y +G+ +y  ++++ A ++f+e++k +p+++   +a +k+++
  MMETSP1137-20121227|5205_1 177 YKRGKGFYVMGNTELALRHFREALKLDPEHQEC-KADYKQAK 217
                 999**********************99999753.44455555 PP

  == domain 2    score: -1.0 bits;  conditional E-value: 0.94
   TIGR02795  14 kegdYakAeqaFkaFlkkYPkstlap 39 
                 ++ +Y++A+q + + l+  P s + +
  MMETSP1137-20121227|5205_1 245 RDDQYEEARQLLSDALELLPPSVYRA 270
                 46689999999999888888888765 PP

  == domain 3    score: 11.3 bits;  conditional E-value: 0.00015
   TIGR02795  37 lapnAqYwlGealyakkkykdAakaflevvkkypksekapdallklgeslqelgqkekAkkt 98 
                  ++ ++ +l+eal+ ++k+++A+ +++ ++++  +++k + + l+++e l +  ++++  k+
  MMETSP1137-20121227|5205_1 302 QSAASNLLLAEALLLNEKFEEAISTYRRIIEQ-DEHNKEARQGLQQAEKLLKRSKEHDHYKV 362
                 455678899*********************95.56777777777888777766666555555 PP

  == domain 4    score: -0.5 bits;  conditional E-value: 0.68
   TIGR02795  29 lkkYPkstlapnAqYwl.Geal 49 
                  +k+P ++ a++A++ l +ea+
  MMETSP1137-20121227|5205_1 387 PDKNPTDREAAEAKFKLvAEAY 408
                 5677888888888886524444 PP

>> TIGR02552  LcrH_SycD: type III secretion low calcium response chaperone LcrH/SycD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.0   0.0   0.00041      0.24      88     134 ..     175     221 ..     168     223 .. 0.87
   2 ?    4.0   0.0     0.014       8.1      57      89 ..     309     341 ..     297     368 .. 0.68

  Alignments for each domain:
  == domain 1    score: 9.0 bits;  conditional E-value: 0.00041
   TIGR02552  88 pvyhaaecllalgekeeAlkaLklaieiaeekeeyselkeraeamle 134
                  +y++++ ++ +g++e Al+ ++ a++++ e +e ++  ++a+++ +
  MMETSP1137-20121227|5205_1 175 KLYKRGKGFYVMGNTELALRHFREALKLDPEHQECKADYKQAKKLSK 221
                 67999*************************99999998888888765 PP

  == domain 2    score: 4.0 bits;  conditional E-value: 0.014
   TIGR02552  57 gLaaclqalkeyeeAiaaYalaaaldlddprpv 89 
                  La++l   +++eeAi +Y ++   d+++ ++ 
  MMETSP1137-20121227|5205_1 309 LLAEALLLNEKFEEAISTYRRIIEQDEHNKEAR 341
                 477777788888888888888887776665543 PP

>> TIGR00934  2a38euk: potassium uptake protein, Trk family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   5.1    0.0052       3.1     248     405 ..     237     419 ..     169     449 .. 0.57

  Alignments for each domain:
  == domain 1    score: 3.8 bits;  conditional E-value: 0.0052
   TIGR00934 248 rresrdidpedlyrsimmlqekheata..........................kirdkiseanslaaesdees.......sesrriqekikrrlstssieknsqqnltrlaktksfddskavrlersktidraeasdleeldrakdfqkmveknvkaakrkkknfkkreanlklfeksr.yakksdrneedn 405
                 +  +++++  d y+   +l+      +                          + +d++ ++ + ++e+d++s       +e+ +++ek + ++st  +  + q++ ++ a++ + + +  + l+rsk  d+ +  ++++++ +++ ++  +k   + + +k+ + ++ a+ k+   ++ y+  sd+++  +
  MMETSP1137-20121227|5205_1 237 KGRQKQLERDDQYEEARQLL------SdalellppsvyraslyrdlcicntktRRQDESLKVCTKHSEHDSQSaasnlllAEALLLNEKFEEAISTYRRIIE-QDEHNKEARQGLQQAE--KLLKRSKEHDHYKVLQVSRSSTSREIKRAYHKLAVEYHPDKNPTDREAAEAKFKLVAEaYEVLSDEDKRRR 419
                 33344444444443333333......0122234455555555555555555223333333333333333333334444445557777777777776554333.6777777777777744..47888888888888888888888888888888888888888777777777776543330333344333332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (455 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       188  (0.0458313); expected 82.0 (0.02)
Passed bias filter:                       98  (0.0238908); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.42u 0.17s 00:00:00.59 Elapsed: 00:00:00.52
# Mc/sec: 1154.90
//
Query:       MMETSP1137-20121227|5206_1  [L=275]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.5e-25   87.5   0.1    1.8e-25   87.2   0.0    1.1  1  TIGR00691 spoT_relA: RelA/SpoT family protein


Domain annotation for each model (and alignments):
>> TIGR00691  spoT_relA: RelA/SpoT family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.2   0.0   4.5e-29   1.8e-25       1      69 [.     137     205 ..     137     210 .. 0.96

  Alignments for each domain:
  == domain 1    score: 87.2 bits;  conditional E-value: 4.5e-29
   TIGR00691   1 AlelakklHeeQkRksGePyiiHPlavalllaelglDeetviAaLLHDvvEDTdvteeeieeeFgeeva 69 
                 Al++a+ +H++QkRk GeP+iiHP+ +a +la+l++D  t++A+LLHD+vEDT+ + +++ + F ++v 
  MMETSP1137-20121227|5206_1 137 ALQVATASHDGQKRKNGEPFIIHPIETAKILADLKMDLDTIVAGLLHDTVEDTPLNLQDVXAPFRAKVI 205
                 899*************************************************************99886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (275 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        72  (0.0175524); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.22u 0.16s 00:00:00.38 Elapsed: 00:00:00.40
# Mc/sec: 907.43
//
Query:       MMETSP1137-20121227|5207_1  [L=71]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (71 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        33  (0.00804486); expected 82.0 (0.02)
Passed bias filter:                       32  (0.00780107); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.52
# Mc/sec: 180.22
//
Query:       MMETSP1137-20121227|5208_1  [L=215]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (215 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        46  (0.011214); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.13s 00:00:00.31 Elapsed: 00:00:00.36
# Mc/sec: 788.27
//
Query:       MMETSP1137-20121227|5209_1  [L=2141]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.3e-79  266.1   0.0    1.1e-70  236.5   0.0    2.6  2  TIGR02712 urea_carbox: urea carboxylase
    7.4e-67  223.9   0.0    1.1e-58  197.0   0.0    2.3  2  TIGR00514 accC: acetyl-CoA carboxylase, biotin carboxylase subunit
    5.4e-66  220.7   0.0    1.4e-58  196.1   0.0    2.7  2  TIGR01235 pyruv_carbox: pyruvate carboxylase
    8.6e-14   49.0   0.0      1e-09   35.6   0.0    3.1  2  TIGR01117 mmdA: methylmalonyl-CoA decarboxylase alpha subunit
    5.7e-08   28.6   0.0    1.5e-07   27.3   0.0    1.5  1  TIGR01369 CPSaseII_lrg: carbamoyl-phosphate synthase, large subunit
    2.4e-06   24.1   0.0    4.8e-06   23.1   0.0    1.5  1  TIGR01108 oadA: oxaloacetate decarboxylase alpha subunit
    0.00038   16.4   0.0    0.00061   15.7   0.0    1.2  1  TIGR02068 cya_phycin_syn: cyanophycin synthetase
     0.0006   17.1   0.0     0.0013   16.0   0.0    1.4  1  TIGR00768 rimK_fam: alpha-L-glutamate ligases, RimK family
     0.0041   14.1   0.0     0.0084   13.0   0.0    1.4  1  TIGR02144 LysX_arch: lysine biosynthesis enzyme LysX
  ------ inclusion threshold ------
      0.041   10.7   0.0       0.12    9.2   0.0    1.7  1  TIGR01205 D_ala_D_alaTIGR: D-alanine--D-alanine ligase


Domain annotation for each model (and alignments):
>> TIGR02712  urea_carbox: urea carboxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  236.5   0.0   2.6e-73   1.1e-70       3     449 ..      63     545 ..      61     561 .. 0.80
   2 !   26.9   0.0   4.9e-10     2e-07    1133    1200 ..     678     744 ..     614     745 .. 0.92

  Alignments for each domain:
  == domain 1    score: 236.5 bits;  conditional E-value: 2.6e-73
   TIGR02712   3 kvlianrGeiavriirtlkklgirs.........vavysdad..kasqhvkdadeavalgeataaesylkidkileiakktgaeaiiPGyGflsenaafaeaceaag......ivf..vGPtpeqlrklGl....khtarelaeaagvPllp.GtgllesleealeaaeeigyPvmlkstaGGGGiGlqkvdsaeeleeafesvkrlgesffsdagvflekfvekarhvevqilGdgkGkvvalgerdCslqrrnqkvveetPaPnlpeevrekllkaaeklaeavnyrsaGtvefiydekrdefyflevntrlqvehpvteavtgldlvewmvrlaagea....pdldelkve.................kprGaaiearvyaedPakdfqPspGlltevkfPedvrvdtwvekGtevsaeydPmlakiivhgkdreealeklkkaleetkvaG.ivtnldylksivssevfrkakvstrllekleyeasai 449
                 ++lian G  a++ i  +++   ++         v + +  d  ++++ +++ade v + + + a+ y +++ i++++ +++++a++ G+G  sen ++ + + ++       ++f  +  ++e      +       + el e+ ++P+ +  +  ++s++ea+eaa++igyPvmlk++ GGGG G++k  ++eel++a+ +v      +  ++ v    + + arh+evq++Gd +G+++alg rdCs qrr qk+ ee P    p+++ e++++ a++l++++ yrsaGtve++y ++ de+yfle+n rlqvehpvte +tg+ l    +++a g +    p++  +  +                 +   + i ar+ ae+P + f+P++G++ +++f +d +v ++ +         d  +           ea++ l  al+e  + G i t ++yl +++++ +f++ +  t+ l+ l  ++ a+
  MMETSP1137-20121227|5209_1  63 RILIANNGMAATKTIMSIRSWAYKTfgdegavqfVVMATPEDlaANAEFIRRADEFVEVPGGSNANNYANVQLIVDLCIQQNVDAVMVGWGHASENPKLGDLLLEKTaalgrtVTFxrLDAAGEAAGVSTMpwngDGLSAELDENGNIPFDQfDAACIHSVDEAVEAANRIGYPVMLKASEGGGGKGIRKALDEEELRNAYPQVVGEVPGSPXSSXVQ---LCQGARHLEVQVVGDAHGNAMALGGRDCSTQRRFQKIFEEGPPTVAPDAIFERMMREAVNLCKSIGYRSAGTVEWLYLPATDEYYFLELNPRLQVEHPVTEGITGVSLPATQLHVAMGIPlyniPEVRTFFDKdtlgtgefdleyykpssSYPKHVIAARITAENPDEGFKPTSGKIERINFQSDTKVWGYFS------VVADGGVHEFADSQFXPXEARKSLVLALKELFILGdIRTTVEYLSELLETPEFKENTIDTSWLDGLIASK-AV 545
                 799*****99999998888765544222222111333333332267889*************************************************9987655431111224452223333332222221111234678999999**98736789**********************************************988888888888885...6789************************************************************************************************************99998854111133322221134445566677775544334689****************************999999864......4457777777778888999***********99998799*************************9875432.33 PP

  == domain 2    score: 26.9 bits;  conditional E-value: 4.9e-10
   TIGR02712 1133 vaveselagrlWkvlvevgdeveagdklviveamkmelavsapvaGkvkkilvkeGdaveaGdalvvl 1200
                   ++ s+++g+l + lv+ g+ev+ag++    eamkm ++++a +aG+v +   ++G+ +++Gd+l+ l
  MMETSP1137-20121227|5209_1  678 SELRSDITGKLVRYLVDDGAEVAAGQPFAXAEAMKMLITIKAGEAGQVFHA-LQPGSIINQGDLLANL 744 
                  5789********************************************985.69*********99866 PP

>> TIGR00514  accC: acetyl-CoA carboxylase, biotin carboxylase subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  197.0   0.0   2.7e-61   1.1e-58       3     321 ..      62     401 ..      60     409 .. 0.83
   2 !   24.6   0.0   5.2e-09   2.1e-06     332     443 ..     434     538 ..     417     544 .. 0.85

  Alignments for each domain:
  == domain 1    score: 197.0 bits;  conditional E-value: 2.7e-61
   TIGR00514   3 dkilianrGeialrilrackelGikt.........v..avystadkdalhvkladeavciGeaasaksylnipniiaaaeitgadaihpGyGflsenadfaelvees......gltfi....Gpsaeairlm...GdkvsaketmkkagvpvvpGsdGlvedveeaveiakeiGypviikataGGGGrGlrvvreedelvkslkaakaeakaafnndgvylekfienprhveiqvladkyGnvvylgerdcsiqrrkqklleeapspaltselrkkiGeaavkaaksigytgaGtvefll.dkegefyflemntriqvehpvtemvtgvdlikeqirvakGekl 321
                  +ilian G  a + + + +    kt         v  a       +a  ++ ade v +   + a+ y n+  i+  ++ +++da+  G+G  sen ++ +l  e+       +tf       +a  +++m   Gd  sa e+ ++ ++p        +++v+eave a++iGypv++ka+ GGGG+G+r + +e+el ++  +   e   +   + v l    +  rh+e+qv++d +Gn++ lg rdcs qrr qk+ ee p  +  + + +++   av+++ksigy++aGtve+l+    +e+yfle+n r+qvehpvte +tgv l   q++va+G +l
  MMETSP1137-20121227|5209_1  62 RRILIANNGMAATKTIMSIRSWAYKTfgdegavqfVvmATPEDLAANAEFIRRADEFVEVPGGSNANNYANVQLIVDLCIQQNVDAVMVGWGHASENPKLGDLLLEKtaalgrTVTFXrldaAGEAAGVSTMpwnGDGLSA-ELDENGNIPFDQFDAACIHSVDEAVEAANRIGYPVMLKASEGGGGKGIRKALDEEELRNAYPQVVGEVPGSPXSSXVQL---CQGARHLEVQVVGDAHGNAMALGGRDCSTQRRFQKIFEEGPPTVAPDAIFERMMREAVNLCKSIGYRSAGTVEWLYlPATDEYYFLELNPRLQVEHPVTEGITGVSLPATQLHVAMGIPL 401
                 67899999999988876665554444111111111200222334578999**********999***********************************9988765431222224666422222345567777554666665.6788999999999999****************************************************99988888865...799**************************************88888899**************************8346788***********************************987 PP

  == domain 2    score: 24.6 bits;  conditional E-value: 5.2e-09
   TIGR00514 332 GhaiecrinaedpsknflpspGriksylppgGlgvrvdsavysgyavppyydsliaklivygktreeaiarmkralkeliieG.ikttidfhkliledekfkkgevdikylek 443
                  h+i  ri ae+p++ f+p+ G+i++    +   v     v ++  v  + ds             ea + +  alkel i G i+tt+++ + +le+++fk+  +d+++l+ 
  MMETSP1137-20121227|5209_1 434 KHVIAARITAENPDEGFKPTSGKIERINFQSDTKVWGYFSVVADGGVHEFADSQFX--------PXEARKSLVLALKELFILGdIRTTVEYLSELLETPEFKENTIDTSWLDG 538
                 69************************999998888888888888888888888654........34566777889999877665*************************9986 PP

>> TIGR01235  pyruv_carbox: pyruvate carboxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  196.1   0.0   3.5e-61   1.4e-58      24     449 ..      95     537 ..      64     541 .. 0.79
   2 !   21.3   0.0   2.2e-08   8.9e-06    1073    1142 ..     676     744 ..     668     745 .. 0.92

  Alignments for each domain:
  == domain 1    score: 196.1 bits;  conditional E-value: 3.5e-61
   TIGR01235  24 rtvavyseedklslhrq..kadeaylvGeggqlaPveaylsideiirvakknkvdaihPGyGflsensefadkveka....G..ivfi.....GPka..evldqlGdkvaarelaikagvPvvPgtdgpvetleevldfakaiGyPvilkaayGGGGrGmrvvrseeevadaferakseakaafGndevyveklierpkhievqllgdkaGnvvhlferdcsvqrrhqkvvevaPakslsrevrdklaeaavklakevnyinaGtveflvdedt.kfyfievnpriqvehtvteeitGidivkaqikvaeGaslps.kklglp.eqediktkG...............yaiqcrvttedPakdflPdtGrievyrsaeGfGvrldggnayaGaiispyydsllvkvsasastleeaaakmvralrefrirG.vktnipfleavlenekflegsydtsfid 449
                 + v + + ed  +   +  +ade   v  g   +  + y +++ i++++ +++vda+  G+G  sen+++ d   ++    G  ++f      G  a   ++   Gd ++a el ++ ++P      + +++++e+++ a++iGyPv+lka+ GGGG+G+r   +eee+++a+ +   e   +         +l + ++h+evq++gd +Gn + l  rdcs qrr qk+ e  P +  ++++ ++++ +av+l k+++y++aGtve+l    t ++yf+e+npr+qveh vte itG+ + ++q++va G  l + +++  + +++ + t G               + i +r+t+e+P++ f+P  G+ie     + + v             s   d  +   + s   + ea++ +v al+e+ i G ++t + +l ++le + f e++ dts++d
  MMETSP1137-20121227|5209_1  95 QFVVMATPEDLAANAEFirRADEFVEVPGG---SNANNYANVQLIVDLCIQQNVDAVMVGWGHASENPKLGDLLLEKtaalGrtVTFXrldaaGEAAgvSTMPWNGDGLSA-ELDENGNIPFDQFDAACIHSVDEAVEAANRIGYPVMLKASEGGGGKGIRKALDEEELRNAYPQVVGEVPGSPXSSX---VQLCQGARHLEVQVVGDAHGNAMALGGRDCSTQRRFQKIFEEGPPTVAPDAIFERMMREAVNLCKSIGYRSAGTVEWLYLPATdEYYFLELNPRLQVEHPVTEGITGVSLPATQLHVAMGIPLYNiPEVRTFfDKDTLGT-GefdleyykpsssypkHVIAARITAENPDEGFKPTSGKIERINFQSDTKVWGYF---------SVVADGGVHEFADSQFXPXEARKSLVLALKELFILGdIRTTVEYLSELLETPEFKENTIDTSWLD 537
                 555555555554443332278887777766...67799******************************9988665431122232666422222444322345566999988.7899**************************************************************9886655555...58999************************************************************************9765554************************************98853255544414443333.22222222222232337899*******************976655555544333.........3334555555555667889999*********9888779************************998 PP

  == domain 2    score: 21.3 bits;  conditional E-value: 2.2e-08
   TIGR01235 1073 nkahvgapmpGvvievkvkaGskvekGdvlvvleamkmetvvqapkdGtvkevlvkdGekidaedlllvl 1142
                  +++++ + ++G +++ +v+ G +v +G++++  eamkm ++++a ++G+v +  ++ G+ i+  dll+ l
  MMETSP1137-20121227|5209_1  676 DPSELRSDITGKLVRYLVDDGAEVAAGQPFAXAEAMKMLITIKAGEAGQVFH-ALQPGSIINQGDLLANL 744 
                  778888999*****************************************87.5799*********9876 PP

>> TIGR01117  mmdA: methylmalonyl-CoA decarboxylase alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.1   0.0   0.00053      0.22      80     132 ..    1503    1555 ..    1500    1573 .. 0.93
   2 !   35.6   0.0   2.5e-12     1e-09     134     440 ..    1622    1958 ..    1612    1980 .. 0.79

  Alignments for each domain:
  == domain 1    score: 8.1 bits;  conditional E-value: 0.00053
   TIGR01117   80 dgrlvyvfaqdftveggslgemhaakivkildlalklgapvvglndsggariq 132 
                  +gr++++ a+d tv+ gs+g +       + + a   g p + +    gari 
  MMETSP1137-20121227|5209_1 1503 EGRPLVIIANDCTVQSGSFGLLEDNFFDAVSKYARASGLPRLHIASNSGARIG 1555
                  79*************************************************96 PP

  == domain 2    score: 35.6 bits;  conditional E-value: 2.5e-12
   TIGR01117  134 avdalkgygdifyrntiasgvvpqisvilgpcaggavyspaltdfilmvdntsqmfitgpqviktvtgeev..taedlggamahasksgvahliaeddedvialirkllsylpsnnmedapevkteddpvrktpelddllpddpnkayd...vkd..vitaivdngeylelqpyyaknivvgfaridgksvgiva..............nqpk....vlagvldi...dssdkiarfv.rfcdafnipivtfvdvpgylpgvdqeyggiirhgakvlyayseatvpkvtiilr..kayggaylamgskdlgadv..vyayptaeiavmgpegaaniifrk 440 
                  +v+ l+g g i  + + a      +s + g   g   y   l++ ++ +dn   +++tg   +  + g ev  +  +lgg ++     gv+h +a dd+d ++++ + lsy+p    +  p +k+ d   r      +  p dp++        d   ++   d+  + e+   + k +vvg a++ g ++g++a               +p+    vla + ++   ds+ k+a+ +  f  a n+p++ f +  g+  g+ + +g i++ g+ ++        p+ + i       gga++ +    + a++  +ya   a   ++ p g +++ frk
  MMETSP1137-20121227|5209_1 1622 GVENLRGSGMIAGETSAAYDETFTLSYVTGRSVGIGAYVNRLAQRVIQMDNGP-IILTGFSALNKLLGREVynSQDQLGGPQIM-LPNGVSHKLAADDQDGVDHVLRWLSYVPKTASDTVPFIKSADPIDRPIGFKPTKTPYDPRHMLAgtaAADgtWVSGFFDEDSFEEYLADWGKSVVVGRAKLGGVPMGVIAvetrlveqripadpANPNsretVLAQAGQVwypDSAFKTAQAIaDFNHAENLPLIVFANWRGFSGGTRDMFGEILKFGSYIVDNLRTYKHPVFAYIPPngELRGGAWVVID-PTINAEMmeMYADTDARGGILEPPGICDVKFRK 1958
                  7999********99999999999*********************999998865.679*************9444578***9986.5689************************************9988888777777778887765431113332146677899*****************************93333333322222212322222454443444448899999987358999********************************999999999999988651156799998765.456666612566667778899999999999998 PP

>> TIGR01369  CPSaseII_lrg: carbamoyl-phosphate synthase, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.3   0.0   3.6e-10   1.5e-07     143     334 ..     215     405 ..     207     425 .. 0.76

  Alignments for each domain:
  == domain 1    score: 27.3 bits;  conditional E-value: 3.6e-10
   TIGR01369 143 akseivesveealeaaeeigyPvivRaaftlgGtGsgiaeneeelkelvekalkaspik.qvlvekslagwkEiEyEvvRDskdnciivcniEnlDplGvHtGdsivv.aPsqtLtdkeyqllRdaslkiirelgvegecnvqfaldPeskryvviEvnpRvsRssALAskAtGyPiAkvaaklavGysLdelk 334
                  +++ ++sv+ea+eaa++igyPv+++a+   gG+G   a +eeel++   + +   p +      +  +g + +E+ vv D+++n++ +      D       + i    P     d  ++++   ++++ +++g  ++  v +   P + +y+ +E+npR+     +    tG  +  +  ++a+G+ L +++
  MMETSP1137-20121227|5209_1 215 FDAACIHSVDEAVEAANRIGYPVMLKASEGGGGKGIRKALDEEELRNAYPQVVGEVPGSpXSSXVQLCQGARHLEVQVVGDAHGNAMALGGR---DCSTQRRFQKIFEeGPPTVAPDAIFERMMREAVNLCKSIGYRSAGTVEWLYLPATDEYYFLELNPRLQVEHPVTEGITGVSLPATQLHVAMGIPLYNIP 405
                 45678899999999999999999999999999999999999999999888877665543133344667899999999999999999877543...443334444443213444445788888888899999999999999999999999999999999999999999999999998888888888888887765 PP

>> TIGR01108  oadA: oxaloacetate decarboxylase alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.1   0.0   1.2e-08   4.8e-06     512     582 .]     672     741 ..     622     741 .. 0.86

  Alignments for each domain:
  == domain 1    score: 23.1 bits;  conditional E-value: 1.2e-08
   TIGR01108 512 akakastdvtaplaGsivkvkvseGdevkeGevllvleamkmeteikaaaaGiveeilvkkGdkvavgevl 582
                 +++   +++ + ++G++v+  v++G+ev++G+     eamkm   ika +aG v   +++ G  ++ g+ l
  MMETSP1137-20121227|5209_1 672 PTVYDPSELRSDITGKLVRYLVDDGAEVAAGQPFAXAEAMKMLITIKAGEAGQVF-HALQPGSIINQGDLL 741
                 6777788999******************************************998.578999999888865 PP

>> TIGR02068  cya_phycin_syn: cyanophycin synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   1.5e-06   0.00061     233     279 ..     219     264 ..     204     295 .. 0.88

  Alignments for each domain:
  == domain 1    score: 15.7 bits;  conditional E-value: 1.5e-06
   TIGR02068 233 vvqsaeeaeeaaeelGyPvvikPldGnhGrGvtiniesreeiesaye 279
                  ++s++ea+eaa+ +GyPv++k  +G  G+G+   ++  ee+ +ay 
  MMETSP1137-20121227|5209_1 219 CIHSVDEAVEAANRIGYPVMLKASEGGGGKGIRKALD-EEELRNAYP 264
                 6899****************************98876.577888886 PP

>> TIGR00768  rimK_fam: alpha-L-glutamate ligases, RimK family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0   3.1e-06    0.0013     101     149 ..     213     261 ..     203     301 .. 0.90

  Alignments for each domain:
  == domain 1    score: 16.0 bits;  conditional E-value: 3.1e-06
   TIGR00768 101 plpktlvagseeeakklieeigfPvvlKpvfGswGklvvlvedkqeaek 149
                 ++ + + ++s +ea +++++ig+Pv lK  +G  Gk++ ++ d++e+++
  MMETSP1137-20121227|5209_1 213 DQFDAACIHSVDEAVEAANRIGYPVMLKASEGGGGKGIRKALDEEELRN 261
                 5667788999***********************************9986 PP

>> TIGR02144  LysX_arch: lysine biosynthesis enzyme LysX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   0.0   2.1e-05    0.0084     106     148 ..     218     260 ..     202     270 .. 0.87

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 2.1e-05
   TIGR02144 106 ivafdkeaalklaeelGyPvvlKPveGsWGrlvskvkdkdeae 148
                 + + + ++a+++a+++GyPv+lK  eG  G+ + k+ d++e++
  MMETSP1137-20121227|5209_1 218 ACIHSVDEAVEAANRIGYPVMLKASEGGGGKGIRKALDEEELR 260
                 5677889****************************99999876 PP

>> TIGR01205  D_ala_D_alaTIGR: D-alanine--D-alanine ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   0.0   0.00028      0.12     133     179 ..     221     267 ..     204     372 .. 0.60

  Alignments for each domain:
  == domain 1    score: 9.2 bits;  conditional E-value: 0.00028
   TIGR01205 133 kseeaekekleklglpvivKpareGSSvGvskvkseeeleealeeaf 179
                 +s ++ +e+++++g+pv+ K+++ G   G+ k+ +eeel++a+ + +
  MMETSP1137-20121227|5209_1 221 HSVDEAVEAANRIGYPVMLKASEGGGGKGIRKALDEEELRNAYPQVV 267
                 444455668899***************************99976544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (2141 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       154  (0.0375427); expected 82.0 (0.02)
Passed bias filter:                      112  (0.0273038); expected 82.0 (0.02)
Passed Vit filter:                        28  (0.00682594); expected 4.1 (0.001)
Passed Fwd filter:                        10  (0.00243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 1.68u 0.17s 00:00:01.85 Elapsed: 00:00:01.53
# Mc/sec: 1846.98
//
Query:       MMETSP1137-20121227|5210_1  [L=502]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.8e-90  301.4   0.0      2e-90  301.2   0.0    1.0  1  TIGR00508 bioA: adenosylmethionine-8-amino-7-oxononanoate transaminase
    2.1e-64  215.5   0.0    2.5e-63  212.0   0.0    2.0  1  TIGR00707 argD: acetylornithine and succinylornithine transaminases
      7e-57  190.8   0.0    9.4e-57  190.4   0.0    1.1  1  TIGR01885 Orn_aminotrans: ornithine--oxo-acid transaminase
    3.5e-56  188.4   0.0    4.4e-56  188.1   0.0    1.0  1  TIGR00700 GABAtrnsam: 4-aminobutyrate transaminase
      6e-49  164.9   0.2    3.1e-37  126.3   0.1    2.0  2  TIGR03246 arg_catab_astC: succinylornithine transaminase family
    1.1e-44  150.5   0.0    1.4e-44  150.2   0.0    1.0  1  TIGR00709 dat: 2,4-diaminobutyrate 4-transaminase
    5.6e-42  141.9   0.1    2.2e-41  140.0   0.0    1.7  1  TIGR03372 putres_am_tran: putrescine aminotransferase
    3.4e-30  102.8   0.0    4.9e-30  102.3   0.0    1.1  1  TIGR02407 ectoine_ectB: diaminobutyrate--2-oxoglutarate aminotransferase
    8.5e-29   98.1   0.0    1.2e-28   97.7   0.0    1.2  1  TIGR03251 LAT_fam: L-lysine 6-transaminase
    4.5e-24   82.7   0.0    1.3e-23   81.1   0.0    1.6  1  TIGR00713 hemL: glutamate-1-semialdehyde-2,1-aminomutase
    1.6e-19   67.8   0.0    3.1e-17   60.3   0.0    2.3  2  TIGR00699 GABAtrns_euk: 4-aminobutyrate aminotransferase


Domain annotation for each model (and alignments):
>> TIGR00508  bioA: adenosylmethionine-8-amino-7-oxononanoate transaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  301.2   0.0   5.4e-93     2e-90       3     418 ..      54     490 ..      52     491 .. 0.90

  Alignments for each domain:
  == domain 1    score: 301.2 bits;  conditional E-value: 5.4e-93
   TIGR00508   3 hPytqmkeaepplavekaegvyltdedgkeliDgisSwwvavhGhnhpelneaikeqleklehvi.faglthepaieLaekLveilpeglek..vffsdsGsvavEvalKmalqywqnkgekekkkflalengYHGdTlgamsvgd.velfhel....feellfeqvkvpapeva..lekkeeekeeevleeleklleeh..aeeiaalivEPlvqgagGmrvyspeyLkklrelcdeydvlliaDEiatGfgrtGklFacehagvtPDilclsKaltgGylplaatltteeiyeaflsd..eeekaflHghtytgnplacavAlaslelleeeeilekvk.eieaqlkeeleelkelpkvkdvRvlGaigavelkeekel......eerigekiqkkalekgvllRPl.gnviylmppyiiteeeleklveaikeai 418
                  P+t+   + ppl++++a+g +++d++gk+++ g+s +w++  G+ ++el ea ++q+++l+    f++     + eLa+ Lv+ +p++l++  vff  sGs a +  +++   y++++g ++k+k+l+ ++gYHG T++a s+       h++     +++++++v++p+ + +   +++e++  ++ ++el+++++++  ae++aa+i EP +qgagG+ v ++ y++++r++cd++dv++iaDE++tGfgrtG+++ c   g  PD++ ++K ltgGy+pl+a ++ e+ y+++ s    + + + Hg ty+g+p+acavAl+ +e++e++ ++++v+ ++  ++++++++l +++ v ++R +G+iga+el+++k++      +  +++++ ++al+ g+++RPl g+ + + pp++++e+e+++++++++ a+
  MMETSP1137-20121227|5210_1  54 SPMTNLACELPPLRIVSAKGHHIMDDKGKTYFEGMSGLWCVALGWGNEELIEAASSQMRTLAYYHgFTNRRVPVVDELADALVARAPSRLQHgrVFFGQSGSDANDTQVRLLWAYNHARGLPHKTKLLSRNRGYHGVTVAAGSLLTgLPYVHTAmglpLQPVCAHHVTCPSFYREglPNESEADFVQRLAQELDDAITREggAERVAAFIAEP-IQGAGGVVVPPAGYFHAVRDVCDKHDVMMIADEVITGFGRTGNFWGCTSVGQDPDLISCAKQLTGGYVPLSACIVPEHFYQTIRSAnrADGRILGHGYTYSGHPVACAVALKVIEIIERDGLVSRVHdRLGPHMQSRVKRLGAHALVGETRGMGLIGAIELVADKQTkrhfapSVGVAAAVARAALDLGLVIRPLpGDALAFCPPLTVDETEIDEMFDKVEMAL 490
                 59999999*****************************************************9753255555566789************98544***********************************************998765666665511115677777777777665575566889999999****999988644689********.8**********************************************************************************988545678999*****************************9973678899999**************************97765667667778999***************88*********************998776 PP

>> TIGR00707  argD: acetylornithine and succinylornithine transaminases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  212.0   0.0   6.8e-66   2.5e-63       9     380 ..      64     490 ..      56     491 .. 0.84

  Alignments for each domain:
  == domain 1    score: 212.0 bits;  conditional E-value: 6.8e-66
   TIGR00707   9 lelaivrgkgakvyDveGkeYlDlvaGiavnalGHahpklvealkeqleklvhvsnlyat..eeqlelaeklvelsaad....rvffcnsGaeanEaAlklarkaarkk.gkekkkivafknsFHGRtlgals.atgkpkykkdFe.plvpgvky.ve...y......nd.....iealkeaidde.........taavivEpiqGEgGvvpadkeflkalrelceekdvllivDEvqtGlGRtGklfayehygvePDiltlakalggG.vPigavlakeevaealtvGd........HgstfGGnplacaaalavleviekeellekvkek.geilkkkleellkkkiikevrGkGLllGieleaesl............keivkkleekGllvntagekvlrlvppLiieeeeieeavealeevi 380
                 ++l iv++kg +++D++Gk+Y + ++G+  +alG  +++l+ea ++q+ +l +     +   +   ela+ lv+ +       rvff+ sG++an++ ++l   + + +   +k+k+++ +  +HG t++a s +tg p +++  + pl p   + v    +      n+     ++ l++ +dd          +aa i EpiqG gGvv++ + +++a+r++c+++dv++i DEv tG+GRtG++++ + +g +PD+++ ak l+gG vP++a+++ e++ ++++  +        Hg t+ G p+aca+al+v+e+ie++ l+++v+++ g  ++++++ l ++  + e rG+GL+  iel a+++            + + +++ + Gl++ +   + l + ppL+++e ei+e+ +++e ++
  MMETSP1137-20121227|5210_1  64 PPLRIVSAKGHHIMDDKGKTYFEGMSGLWCVALGWGNEELIEAASSQMRTLAYYHGFTNRrvPVVDELADALVARAPSRlqhgRVFFGQSGSDANDTQVRLLWAYNHARgLPHKTKLLSRNRGYHGVTVAAGSlLTGLPYVHTAMGlPLQPVCAHhVTcpsFyreglpNEseadfVQRLAQELDDAitreggaerVAAFIAEPIQGAGGVVVPPAGYFHAVRDVCDKHDVMMIADEVITGFGRTGNFWGCTSVGQDPDLISCAKQLTGGyVPLSACIVPEHFYQTIRSANradgrilgHGYTYSGHPVACAVALKVIEIIERDGLVSRVHDRlGPHMQSRVKRLGAHALVGETRGMGLIGAIELVADKQtkrhfapsvgvaAAVARAALDLGLVIRPLPGDALAFCPPLTVDETEIDEMFDKVEMAL 490
                 5799***********************************************98765544311456789999998876667788************************99789*****************9988359999999877547766543313322222322332211113334444444448999****************************************************************************99979************999875444444666*******************************8754899***************************98765223334444444456778899*********************************99887 PP

>> TIGR01885  Orn_aminotrans: ornithine--oxo-acid transaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  190.4   0.0   2.5e-59   9.4e-57      19     400 ..      66     489 ..      57     491 .. 0.83

  Alignments for each domain:
  == domain 1    score: 190.4 bits;  conditional E-value: 2.5e-59
   TIGR01885  19 lpvvlskaeGakvwdvegkryldflsaysavnqGhchpkivkalveqaqkltlssrafyndvfgefaeyvt.......klfGydkvlpmntGaeavetaiklarkWgykkkkipedkalilsaegnfhGrtlavislstd.pesrenfGpyvpnv..................kkieynn..lealeealeea..gekvaaflvePiqGeaGvvvpddgylkkvrelckkynvlliadeiqtGiartGkllaveheevkPdivllGkalsgGvyPvsavladkevmltikpge........hGstygGnPlasavavaalevlkeeklaera.eklGeelreelkkl.kkeivkevrGkGllnaividesk.angre......awdlclklkekGllakptheeiirlaPPlviteeelkeaveiikkv 400
                 l   +  a+G +++d +gk y++ +s+  +v  G    ++++a   q ++l++    f n   + ++e          + + + +v+  ++G++a++t ++l   W+y++ +   +k+++ls ++ +hG t+a+ sl t  p  ++  G  ++ v                  ++ ++ +  +++l++a++++  +e+vaaf+ ePiqG  Gvvvp  gy++ vr++c+k++v++iade+ tG +rtG++ ++   +  Pd++   k l+gG +P+sa +  ++  +ti++ +        hG ty+G P+a+ava++ +e+++ + l+ r  ++lG ++++++k+l  + +v e rG+Gl+ ai +  +k ++++       a  +     + Gl+ +p  ++ + + PPl++ e e++e  + ++ +
  MMETSP1137-20121227|5210_1  66 LR--IVSAKGHHIMDDKGKTYFEGMSGLWCVALGWGNEELIEAASSQMRTLAYY-HGFTNRRVPVVDELADalvarapSRLQHGRVFFGQSGSDANDTQVRL--LWAYNHARGLPHKTKLLSRNRGYHGVTVAAGSLLTGlPYVHTAMGLPLQPVcahhvtcpsfyreglpneSEADFVQrlAQELDDAITREggAERVAAFIAEPIQGAGGVVVPPAGYFHAVRDVCDKHDVMMIADEVITGFGRTGNFWGCTSVGQDPDLISCAKQLTGGYVPLSACIVPEHFYQTIRSANradgrilgHGYTYSGHPVACAVALKVIEIIERDGLVSRVhDRLGPHMQSRVKRLgAHALVGETRGMGLIGAIELVADKqTKRHFapsvgvAAAVARAALDLGLVIRPLPGDALAFCPPLTVDETEIDEMFDKVEMA 489
                 44..45789*****************************************9975.56777777766655430001111457899***************999..5***976655568899****************988769999****7777777999********9999773333322114666666666422589*******************************************************************************************986444555666****************************997379************77899*************87554415555411111123344455688**************************999887765 PP

>> TIGR00700  GABAtrnsam: 4-aminobutyrate transaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  188.1   0.0   1.2e-58   4.4e-56      19     418 ..      68     490 ..      50     492 .. 0.85

  Alignments for each domain:
  == domain 1    score: 188.1 bits;  conditional E-value: 1.2e-58
   TIGR00700  19 aakaegaelkdvdGnrlidlaagiavlnvGhshPkvveavkrqveelt.htafqvvpyesyvelaeklnaiaPgsgekkavll.nsGaeavenavki......arkytgrpgvvafsrgfhGrtnltmaltakvkPy.kiGfG.Pfape.vyraPlpydyrdialdkqes..lddelaaiealfvadveaeqvaavvlePvqGeGGfivpakelvaavaslckehgivliadevqtGfartGklfaieheddkPdlitvaksladG.lPlsgvvGrae....ildap.apG...glGGtyaGnPlavaaalavldiieeeglierae.qigklvkdklielkeevpaigdvrglGamiavelv.dpdtte...PdaalaekiaaaalaaGlllltaGifGniirlltPltisdelldeglkileaal 418
                 +++a+g  + d +G+ + +  +g+  +++G  + +++ea   q++ l  + +f+    +   ela+ l a aP+  ++  v++ +sG++a +  v++      ar    +  +++ +rg+hG t  + +l +   Py  + +G P+ p   +++  p+ yr+++ ++ e+  ++   + +++    + +ae+vaa + eP+qG GG +vp+ ++ +av+++c++h++++iadev tGf rtG+++ +   +++Pdli+ ak l++G +Pls+ +   +    i  a  a G   g G ty+G P+a+a al v++iie++gl+ r + ++g  ++ ++  l +    +g+ rg+G + a+elv d +t+    P+ ++a+++a aal  Gl++    + G+ + + +Plt+ ++ +de ++ +e al
  MMETSP1137-20121227|5210_1  68 IVSAKGHHIMDDKGKTYFEGMSGLWCVALGWGNEELIEAASSQMRTLAyYHGFTNRRVPVVDELADALVARAPSRLQHGRVFFgQSGSDANDTQVRLlwaynhARGLPHKTKLLSRNRGYHGVTVAAGSLLTG-LPYvHTAMGlPLQPVcAHHVTCPSFYREGLPNESEAdfVQRLAQELDDAITREGGAERVAAFIAEPIQGAGGVVVPPAGYFHAVRDVCDKHDVMMIADEVITGFGRTGNFWGCTSVGQDPDLISCAKQLTGGyVPLSACIVPEHfyqtIRSANrADGrilGHGYTYSGHPVACAVALKVIEIIERDGLVSRVHdRLGPHMQSRVKRLGA-HALVGETRGMGLIGAIELVaDKQTKRhfaPSVGVAAAVARAALDLGLVIR--PLPGDALAFCPPLTVDETEIDEMFDKVEMAL 490
                 6789999**************************************9973579999999*999*************99999988579*******999833222244445677899***********99998765.56624455557766516899********99855544112334456677778889****************************************************************************9967****98765411113344313342224578***************************85279******9998876.579****************99999844459****************9986..589*******************999998877 PP

>> TIGR03246  arg_catab_astC: succinylornithine transaminase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.6   0.0   1.5e-12   5.5e-10      21     140 ..      68     193 ..      57     209 .. 0.86
   2 !  126.3   0.1   8.4e-40   3.1e-37     177     395 ..     256     492 ..     238     494 .. 0.85

  Alignments for each domain:
  == domain 1    score: 36.6 bits;  conditional E-value: 1.5e-12
   TIGR03246  21 pvrgeGsrvwdqegkeyidfaGGiavnalGhahpelvealkeqaeklwhlgngytne..pvl.rlakklvdat....fadkvffcnsGaeaneaalklarkvaldkygaekseivafknsfhGrtlf 140
                  v ++G ++ d++gk y +   G+   alG +  el ea + q ++l +   g+tn   pv+ +la  lv  +       +vff  sG++an++ ++l   + + +  ++k+++++ + ++hG t+ 
  MMETSP1137-20121227|5210_1  68 IVSAKGHHIMDDKGKTYFEGMSGLWCVALGWGNEELIEAASSQMRTLAYY-HGFTNRrvPVVdELADALVARApsrlQHGRVFFGQSGSDANDTQVRLLWAYNHARGLPHKTKLLSRNRGYHGVTVA 193
                 57799****************************************99764.57777623555369999997652221457*******************************************9875 PP

  == domain 2    score: 126.3 bits;  conditional E-value: 8.4e-40
   TIGR03246 177 sdktcavivepiqGegGvvpadkaflkglrelcdrhnallifdevqtGvGrtGelyaymeyGvtpdiltsakalGgGf.piGalltteelakvlkvGt........hGttyGGnplacavaekvldlvntaelleGvkqrhe.lfvdelekinarykvfseirGkGlliGavlteeya.........GkakdlvnaaaeeGvlvliaGpdvvrfapslvieeeeikeGlarlekavek 395
                  ++  a+i epiqG gGvv +   +++++r++cd+h+ ++i dev tG GrtG+++   ++G  pd++++ak l gG+ p+ a +  e++ ++++  +        hG ty G p+acava kv+++++   l++ v+ r   ++ +++++++a +++  e rG+Gl+   +l ++ +         G a  + +aa + G+++    +d + f+p l ++e ei+e ++++e+a+ +
  MMETSP1137-20121227|5210_1 256 AERVAAFIAEPIQGAGGVVVPPAGYFHAVRDVCDKHDVMMIADEVITGFGRTGNFWGCTSVGQDPDLISCAKQLTGGYvPLSACIVPEHFYQTIRSANradgrilgHGYTYSGHPVACAVALKVIEIIERDGLVSRVHDRLGpHMQSRVKRLGA-HALVGETRGMGLIGAIELVADKQtkrhfapsvGVAAAVARAALDLGLVIRPLPGDALAFCPPLTVDETEIDEMFDKVEMALDR 492
                 57889*********************************************************************98865******999988877543222222334********************************9986155667777765.79999******9877778766551222223346688999999*******9999**************************9876 PP

>> TIGR00709  dat: 2,4-diaminobutyrate 4-transaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  150.2   0.0   3.8e-47   1.4e-44      22     439 ..      65     496 ..      47     499 .. 0.86

  Alignments for each domain:
  == domain 1    score: 150.2 bits;  conditional E-value: 3.8e-47
   TIGR00709  22 plafakakGckvtdveGkeyldflaGaGtlalGhndealkqklkdvldsglvlhtl.dlttklkdafieallaillkpkeeyilqftGpsGadaveaalkl......akkytGrsnvisfsgGfhGmtiGala.ltGnlsaknavenllsgv..qflpydheyreplglggeagadavieyienfledv...esGvdkpaavileaiqGeGGvvaasveflrkirevtrkrdillildevqaGvarsGklfafehaGiepdvvvlskavGG.glplavlaikkef.dafqpa........ehtGtfrGnqlalatGlealeilkdenlaknaqer.gerltsalddlikeypeiknvrGrGlmlGieivderkskdaigaypadselaaaiqkacfenklllekgGregevvrllcpvtiddeeleevlsrlkqaveealae 439
                 pl +  akG +++d +Gk y + ++G  ++alG  +e l+ +    +      h + +   ++ d++++al a  + ++ ++   f G sG+da+++ ++l      a+ +  +++++s   G+hG+t  a + ltG    + a++ +l  v  + +  + +yre  gl  e+ ad v++  +++ +d+   e G ++ aa+i e iqG GGvv  +  +++ +r+v++k+d+++i dev +G++r+G+++     G +pd++  +k + G  +pl+   + ++f  + + a        +h  t+ G  +a a  l+++ei+  + l   + +r g ++ s ++ l   +  +++ rG Gl+  ie v ++++k +   +   + +aaa+++a ++ +l++      g+ + + +p+t+d+ e++e+  +++ a+  a++ 
  MMETSP1137-20121227|5210_1  65 PLRIVSAKGHHIMDDKGKTYFEGMSGLWCVALGWGNEELIEAASSQMRTLAYYHGFtNRRVPVVDELADALVARAP-SRLQHGRVFFGQSGSDANDTQVRLlwaynhARGLPHKTKLLSRNRGYHGVTVAAGSlLTGLPYVHTAMGLPLQPVcaHHVTCPSFYRE--GLPNESEADFVQRLAQEL-DDAitrEGGAERVAAFIAEPIQGAGGVVVPPAGYFHAVRDVCDKHDVMMIADEVITGFGRTGNFWGCTSVGQDPDLISCAKQLTGgYVPLSACIVPEHFyQTIRSAnradgrilGHGYTYSGHPVACAVALKVIEIIERDGLVSRVHDRlGPHMQSRVKRL-GAHALVGETRGMGLIGAIELVADKQTKRH---FAPSVGVAAAVARAALDLGLVIRP--LPGDALAFCPPLTVDETEIDEMFDKVEMALDRAMQI 496
                 688999************************************************9735679*************99.6777888899**********999845444456666799*************98877369999**********9873357899******..888888777666555444.33223389**********************************************************************9999866379**9999988872444444333334446999****************************999456677777666.5799******************9977654...556789**************9975..567889999****************99999888765 PP

>> TIGR03372  putres_am_tran: putrescine aminotransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  140.0   0.0     6e-44   2.2e-41      68     392 ..      75     431 ..      68     450 .. 0.80

  Alignments for each domain:
  == domain 1    score: 140.0 bits;  conditional E-value: 6e-44
   TIGR03372  68 tlvdtqgqeyldclggygifnvghrnpvvvaavesqlakqpl.hs.qelldplrallaktlaaltpgklky..sffsnsgtesveaalklakayqsprg...kytfiaasgafhgkslgalsataksafrkpfm..pllpg.frhva...f.....gd......ieamlkalqec..kktg.ddvaavilepiqgeggvilppenyltavrklcdevgallildevqtgmgrtgkmfacehenvqpdilclakalgggvmpigatvateevfsvlfenp.....fl.htttfggnplacaaalatvnvlleknlpeqaeik.gellldglrqlaaeypdlvieargkgllqaiefvdne 392
                  ++d +g+ y++ + g     +g  n  ++ a  sq+      h   +   p+   la +l a +p +l++   ff +sg+++ ++ ++l  ay+  rg   k  +++ +  +hg ++ a s  +   + +  m  pl p   +hv+   f      +      ++ + ++l+++  +  g + vaa i epiqg ggv++pp +y+ avr +cd+   ++i dev tg+grtg+++ c   + +pd++  ak l gg +p+ a +  e+ +  +         +l h  t+ g p+aca al  ++++  + l ++ + + g  +   +++l a    lv e+rg+gl+ aie+v ++
  MMETSP1137-20121227|5210_1  75 HIMDDKGKTYFEGMSGLWCVALGWGNEELIEAASSQMRTLAYyHGfTNRRVPVVDELADALVARAPSRLQHgrVFFGQSGSDANDTQVRLLWAYNHARGlphKTKLLSRNRGYHGVTVAAGSLLTGLPYVHTAMglPLQPVcAHHVTcpsFyreglPNeseadfVQRLAQELDDAitREGGaERVAAFIAEPIQGAGGVVVPPAGYFHAVRDVCDKHDVMMIADEVITGFGRTGNFWGCTSVGQDPDLISCAKQLTGGYVPLSACIVPEHFYQTIRSANradgrILgHGYTYSGHPVACAVALKVIEIIERDGLVSRVHDRlGPHMQSRVKRLGAH--ALVGETRGMGLIGAIELVADK 431
                 57899*******************************98766515424567899****************98336************************98778889999*******99998876555444444322777751466752222222221211111122334444443212333367**************************************************************************************9987753221222244499******************99999999887654388888899999885..7***************98654 PP

>> TIGR02407  ectoine_ectB: diaminobutyrate--2-oxoglutarate aminotransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.3   0.0   1.3e-32   4.9e-30      22     410 ..      69     490 ..      60     492 .. 0.80

  Alignments for each domain:
  == domain 1    score: 102.3 bits;  conditional E-value: 1.3e-32
   TIGR02407  22 ekakgaklldedgkeyidflagaGalnyGhnneklkealldylaedgivhsldmateakkefletfeevil..kPreldykvqftgPtGtnavesalkl......arkvtgrenvvaftnafhGmslgsla.vtgnkskreeagvsls....nvvrlP..y.dgylde.evdslayleklleds...ssGvdlPaaviletvqgeGGlnvaskeWlrsleklcrehdillivddiqaGcGrtGtffsfeeagikPdivclsksisGiGlPlalvllkpel.dvwkPge........hnGtfrGnnlafvaataalekyWkddelekavkkksekvkerleeivekypelkkearGrGllqGlevkk...........edlakkvakkafekgliietsGaedevlkllpaltideeelekGleileqal 410
                   akg++++d +gk+y + ++g  ++  G  ne+l ea  + +++    h++   t+ +   ++ + ++++   P  l++   f g  G++a ++ ++l      ar    ++++++   ++hG+++++ + +tg  + +++ g++l+    + v+ P  y +g  +e e d ++ l + l+d+    +G ++ aa+i e +qg GG+ v  + ++++++++c +hd+++i d++ +G GrtG+f+   + g +Pd+++ +k ++G  +Pl+  ++  ++  + + ++        h  t+ G+ +a   a +++e   +d  +++   + + ++++r++++ ++  +l+ e+rG Gl+  +e+               +a+ va++a++ gl+i       + l + p+lt+de+e+++ ++ +e al
  MMETSP1137-20121227|5210_1  69 VSAKGHHIMDDKGKTYFEGMSGLWCVALGWGNEELIEAASSQMRTLAYYHGF---TNRRVPVVDELADALVarAPSRLQHGRVFFGQSGSDANDTQVRLlwaynhARGLPHKTKLLSRNRGYHGVTVAAGSlLTGLPYVHTAMGLPLQpvcaHHVTCPsfYrEGLPNEsEADFVQRLAQELDDAitrEGGAERVAAFIAEPIQGAGGVVVPPAGYFHAVRDVCDKHDVMMIADEVITGFGRTGNFWGCTSVGQDPDLISCAKQLTGGYVPLSACIVPEHFyQTIRSANradgrilgHGYTYSGHPVACAVALKVIEIIERDGLVSRVHDRLGPHMQSRVKRLGAH--ALVGETRGMGLIGAIELVAdkqtkrhfapsVGVAAAVARAALDLGLVIRPL--PGDALAFCPPLTVDETEIDEMFDKVEMAL 490
                 579****************************************999999996...77788888888887763369********************999856555567777899*************998873699999999999877522223344453342344333156777888888999633368*****************************************************************************99****9988665413344433111222224559999999999999999987777766666677789999999999875..8999***********9865222222222223467889999*******9865..456899************99988888776 PP

>> TIGR03251  LAT_fam: L-lysine 6-transaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.7   0.0   3.1e-31   1.2e-28     215     432 ..     255     490 ..     149     491 .. 0.79

  Alignments for each domain:
  == domain 1    score: 97.7 bits;  conditional E-value: 3.1e-31
   TIGR03251 215 eeddiaaliiePiqgeGGdnhlrpeflralrklcdehdallvldevqtGvGltGkawayqqlgvkPdvvafGkktqvcGi.....lagrrvdevadnvfkvssrl...nstfGGnlvdmvratrileiieeerlvdrar.eqGehllarleelaaefpklvsnprGrGllcafdlpste.lrde..........lvkalyrekvlvlgaGekairfrpaltvseeeidealdairrvl 432
                   + +aa+i+ePiqg GG     + +++a+r +cd+hd++++ dev tG G tG++w    +g +Pd+++  k+   + +     +  ++  +      +  +r+     t+ G  v    a +++eiie++ lv r + ++G h+++r++ l+a+  +lv ++rG Gl+ a++l +++ ++ +          +++a    ++++ +   +a+ f p+ltv e eide +d ++ +l
  MMETSP1137-20121227|5210_1 255 GAERVAAFIAEPIQGAGGVVVPPAGYFHAVRDVCDKHDVMMIADEVITGFGRTGNFWGCTSVGQDPDLISCAKQLTGGYVplsacIVPEHFYQTIRSANRADGRIlghGYTYSGHPVACAVALKVIEIIERDGLVSRVHdRLGPHMQSRVKRLGAH--ALVGETRGMGLIGAIELVADKqTKRHfapsvgvaaaVARAALDLGLVIRPLPGDALAFCPPLTVDETEIDEMFDKVEMAL 490
                 3578******************************************************************99875433332000033334444444445566777333369************************9975378***********985..48**************9654313433112221111144445556778889999*********************999887 PP

>> TIGR00713  hemL: glutamate-1-semialdehyde-2,1-aminomutase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.1   0.0   3.6e-26   1.3e-23      26     324 ..      60     394 ..      51     419 .. 0.77

  Alignments for each domain:
  == domain 1    score: 81.1 bits;  conditional E-value: 3.6e-26
   TIGR00713  26 avkgtPlfvekakgallldvdgneyiDyvlsyGplilGhahekvveavkealerGlsy.Gapteaei....elakeiiervksv...ekvRlvnsGteatmsavRl......aRgftgrdkiikfeGcyhG...haDalLvkagsgaatlg..............lpsslgvpeeaakltlvlpyndlealeevlee..lgeeiagvivepvagnmgvvlpkkeflealrelteengallilDevvtGF.RvalegaqelygvepDlvvlGkilggG.lPvgalggrreimerla....PeGkvyqaG.tlsgnplavaaGlatlkaleeeevykelee 324
                 a +  Pl + +akg+ ++d +g++y + + +   + lG  +e+++ea + +++    y G ++   +    ela++++ r +s     +v + +sG++a  + vRl      aRg+  + k++  + +yhG   +a +lL+      + +g              +    g p+e  ++ ++      + l++++ +    e++a+ i ep+ g  gvv p +++ +a+r++++++++++i Dev+tGF R  +       g  pDl+   k l+gG +P++a    +   +++       G++   G t sg+p+a a  l+ ++ +e++++ +++++
  MMETSP1137-20121227|5210_1  60 ACELPPLRIVSAKGHHIMDDKGKTYFEGMSGLWCVALGWGNEELIEAASSQMRTLAYYhGFTNR-RVpvvdELADALVARAPSRlqhGRVFFGQSGSDANDTQVRLlwaynhARGLPHKTKLLSRNRGYHGvtvAAGSLLTGLPYVHTAMGlplqpvcahhvtcpSFYREGLPNESEADFVQRLA---QELDDAITRegGAERVAAFIAEPIQGAGGVVVPPAGYFHAVRDVCDKHDVMMIADEVITGFgRTGNFWGCTSVGQDPDLISCAKQLTGGyVPLSACIVPEHFYQTIRsanrADGRILGHGyTYSGHPVACAVALKVIEIIERDGLVSRVHD 394
                 46788999****************************************9999876666366654.33223389999999999866557899**************98988889******************433356677766666666667777777764443333334444444444443332...334444443114589**********************************************444444445667889****99998887757***9999888777775222267****99989*******************9988776643 PP

>> TIGR00699  GABAtrns_euk: 4-aminobutyrate aminotransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.9   0.0    0.0013      0.48      47     149 ..      71     170 ..      65     177 .. 0.74
   2 !   60.3   0.0   8.4e-20   3.1e-17     168     389 ..     169     408 ..     164     436 .. 0.75

  Alignments for each domain:
  == domain 1    score: 6.9 bits;  conditional E-value: 0.0013
   TIGR00699  47 slGnylvdvdGnvlldlyaqiasipiGynnPallkvakspevatalinrPalGnfpskdlakilkegilkvaPkglds..vysalaGsdanelafkaaflyyrsk 149
                 + G +++d  G ++++  + +  +++G+ n +l+ +a s+   ++l     + n     +++++   ++  aP  l++  v++  +Gsdan++  ++   y  ++
  MMETSP1137-20121227|5210_1  71 AKGHHIMDDKGKTYFEGMSGLWCVALGWGNEELIEAASSQM--RTLAYYHGFTNRRVPVVDELADA-LVARAPSRLQHgrVFFGQSGSDANDTQVRLLWAY--NH 170
                 57999******************************998865..45555555555555555555555.666677665543399*********9987655444..44 PP

  == domain 2    score: 60.3 bits;  conditional E-value: 8.4e-20
   TIGR00699 168 nqaPGsPel.avlsfkaafhGrlfgslsttrskp.ihk.ldiPafdwP..qaefPsl.kyPleehveenakeeqrcleeveelikky..rkpvaaiivePiqseGGdnhasddffrklrditkkhnvvfivdevqtGvGatGklwahehwnleePadlvtfskklqtaGyffhdealrPnkpyrqf...n...........twlGdPsralllreiieeikdkdllenva.avGdylyagleela 389
                 n+a G P+   +ls ++++hG +++++s  +  p +h  +++P  +    +   Ps+ +  l +  e +a+  qr  +e ++ i++     +vaa i ePiq  GG       +f+ +rd+  kh+v+ i dev tG G tG++w      + + +dl++ +k+l t+Gy      + P++ y++    n           t+ G+P+   ++ ++ie+i++  l+ +v  + G ++ +++++l 
  MMETSP1137-20121227|5210_1 169 NHARGLPHKtKLLSRNRGYHGVTVAAGSLLTGLPyVHTaMGLPLQPVCahHVTCPSFyREGLPN--ESEADFVQRLAQELDDAITREggAERVAAFIAEPIQGAGGVVVPPAGYFHAVRDVCDKHDVMMIADEVITGFGRTGNFWGCTS--VGQDPDLISCAKQL-TGGYVPLSACIVPEHFYQTIrsaNradgrilghgyTYSGHPVACAVALKVIEIIERDGLVSRVHdRLGPHMQSRVKRLG 408
                 8899999851589999*******99999766665367437888665541134445431223332..33344567888888888876522456*****************************************************9765..66779****99875.8999999999999999986522223334444444489999999999999999999999999885256777777766665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (502 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       114  (0.0277913); expected 82.0 (0.02)
Passed bias filter:                      106  (0.0258411); expected 82.0 (0.02)
Passed Vit filter:                        23  (0.00560702); expected 4.1 (0.001)
Passed Fwd filter:                        11  (0.00268162); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.58u 0.16s 00:00:00.74 Elapsed: 00:00:00.56
# Mc/sec: 1162.43
//
Query:       MMETSP1137-20121227|5211_1  [L=124]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (124 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        56  (0.0136519); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.16s 00:00:00.33 Elapsed: 00:00:00.36
# Mc/sec: 454.63
//
Query:       MMETSP1137-20121227|5212_1  [L=190]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.2e-16   58.1   0.0    1.4e-16   57.9   0.0    1.0  1  TIGR01389 recQ: ATP-dependent DNA helicase RecQ
    6.2e-15   52.7   0.0    7.2e-15   52.5   0.0    1.0  1  TIGR00614 recQ_fam: ATP-dependent DNA helicase, RecQ family
    4.9e-07   26.6   0.0    5.8e-07   26.4   0.0    1.0  1  TIGR00643 recG: ATP-dependent DNA helicase RecG
    6.6e-05   18.6   0.0    8.6e-05   18.2   0.0    1.0  1  TIGR04121 DEXH_lig_assoc: DEXH box helicase, DNA ligase-associated
    0.00083   15.5   0.0      0.001   15.2   0.0    1.0  1  TIGR00631 uvrb: excinuclease ABC subunit B
     0.0011   16.0   0.0     0.0014   15.6   0.0    1.1  1  TIGR01587 cas3_core: CRISPR-associated helicase Cas3


Domain annotation for each model (and alignments):
>> TIGR01389  recQ: ATP-dependent DNA helicase RecQ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.9   0.0     2e-19   1.4e-16     206     335 ..      23     152 ..      10     187 .. 0.85

  Alignments for each domain:
  == domain 1    score: 57.9 bits;  conditional E-value: 2e-19
   TIGR01389 206 vkkenkkkqlleylkkere.ksGiiYassRkkveelaeaLeskgiealaYhaGlskkvRaeaqekFleddvkvvvatvaFGmGidksdvRfvihldlPknlesyyqeaGRaGRDGlkaeaillysea.Dlal 335
                   + +k+ +l +yl + +e +  i++a+++++ve+l +  ++ g  a   h+   +++R+ a+++F+ ++  ++vat     G+d   v +vi +d+ +++esy    GR GR G+   ++++++++ D + 
  MMETSP1137-20121227|5212_1  23 ATDDEKDAKLYKYLCELEEgSRVIVFANTKRRVEKLSKDFSEFGTCA--IHGDKRQDEREGALRSFIANECPLMVATDVAARGLDIGGVTHVINFDMARDVESYVHRIGRTGRAGKLGTSLTFWNPDyDKQC 152
                 55678889999**988777477899**************99888665..69*******************************************************************99999986424444 PP

>> TIGR00614  recQ_fam: ATP-dependent DNA helicase, RecQ family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.5   0.0   1.1e-17   7.2e-15     215     338 ..      31     153 ..      19     185 .. 0.85

  Alignments for each domain:
  == domain 1    score: 52.5 bits;  conditional E-value: 1.1e-17
   TIGR00614 215 dllkfivkefkgksGiiYClsrkkveqvaaeLqkkglaaaaYhagleesarkevqkkflrdeiqvvvatvafGmGinkpdvRfvihyslpksiesYYqesGRaGRDglksecvlfyapa.Dvall 338
                 +l k++ +  +g+  i++ +++++ve+++++  + g    a h +  +++r+   + f+++e+ ++vat     G++   v +vi +++++++esY   +GR GR g   +++ f++p  D +  
  MMETSP1137-20121227|5212_1  31 KLYKYLCELEEGSRVIVFANTKRRVEKLSKDFSEFGT--CAIHGDKRQDEREGALRSFIANECPLMVATDVAARGLDIGGVTHVINFDMARDVESYVHRIGRTGRAGKLGTSLTFWNPDyDKQCA 153
                 678999999999999*****************98885..578***************************9999*******************************************986244444 PP

>> TIGR00643  recG: ATP-dependent DNA helicase RecG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.4   0.0   8.5e-10   5.8e-07     457     561 ..      39     142 ..      14     155 .. 0.85

  Alignments for each domain:
  == domain 1    score: 26.4 bits;  conditional E-value: 8.5e-10
   TIGR00643 457 lieeseklelkaaealleelkkafpklnvallhgrlksdekeevleeFrekevdiLvaTtviEvGvdvPnatvmviedaeRfGlsqLHQLRGRvgRgekksyclL 561
                 l e s  +  ++ +  +e+l+k f+++    +hg  ++de+e +l++F ++e+ ++vaT v   G+d+  +t ++  d  R   s  H + GR gR  k +  l 
  MMETSP1137-20121227|5212_1  39 LEEGSRVIVFANTKRRVEKLSKDFSEFGTCAIHGDKRQDEREGALRSFIANECPLMVATDVAARGLDIGGVTHVINFDMARDVESYVHRI-GRTGRAGKLGTSLT 142
                 3344566678899999*****************************************************************999****98.99999988776665 PP

>> TIGR04121  DEXH_lig_assoc: DEXH box helicase, DNA ligase-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.0   1.3e-07   8.6e-05     243     345 ..      37     133 ..      29     143 .. 0.87

  Alignments for each domain:
  == domain 1    score: 18.2 bits;  conditional E-value: 1.3e-07
   TIGR04121 243 eeikkarttlvFtNtRsqaEllfqaLleaneelaleialhHgsldkeqRekveaalkagklravvcTssLdLGvDfgdvdlviqvGspkgvaRllQRiGRsnH 345
                  e+++ + ++vF Nt+ + E l     +   e  ++ a+ Hg   +++Re   + + a++  ++v+T     G+D g v  vi+   ++ v   + RiGR++ 
  MMETSP1137-20121227|5212_1  37 CELEEGSRVIVFANTKRRVEKL----SKDFSE-FGTCAI-HGDKRQDEREGALRSFIANECPLMVATDVAARGLDIGGVTHVINFDMARDVESYVHRIGRTGR 133
                 567888999********99965....555556.566788.699999******************************************************975 PP

>> TIGR00631  uvrb: excinuclease ABC subunit B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0   1.5e-06     0.001     440     542 ..      39     134 ..      19     145 .. 0.90

  Alignments for each domain:
  == domain 1    score: 15.2 bits;  conditional E-value: 1.5e-06
   TIGR00631 440 vaknervlvttltkkmaedltdylkelgikvkylhseidtlerveiirdLrkgefdvlvGinLLreGlDlPevslvailDadkeGflrsersLiqtiGraarn 542
                  +++ rv+v + tk+  e+l++ ++e g  +  +h +    er   +r++ ++e+ ++v  ++   GlD+  v+ v  +D     + r+ +s +  iGr  r 
  MMETSP1137-20121227|5212_1  39 LEEGSRVIVFANTKRRVEKLSKDFSEFGTCA--IHGDKRQDEREGALRSFIANECPLMVATDVAARGLDIGGVTHVINFD-----MARDVESYVHRIGRTGRA 134
                 56789**********************9765..9******************************************9999.....579999999999999885 PP

>> TIGR01587  cas3_core: CRISPR-associated helicase Cas3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   2.1e-06    0.0014     203     321 ..      24     136 ..       9     151 .. 0.79

  Alignments for each domain:
  == domain 1    score: 15.6 bits;  conditional E-value: 2.1e-06
   TIGR01587 203 kdkleeisslerllealkkekkvliivNtVdrAqelyqklkekapeeeiiLlHsrftekdrekkEaellkelkknekfvivaTQviEvslDis..vdvlitela.pidsLiQRlGRlaRygr 321
                  d++++   l + l +l+++++v++++Nt +r  +l++ + e +       +H+   + +re      l+++  ne  ++vaT v+  +lDi     v+  ++a  ++s + R+GR  R g+
  MMETSP1137-20121227|5212_1  24 TDDEKDA-KLYKYLCELEEGSRVIVFANTKRRVEKLSKDFSEFGT----CAIHGDKRQDEREG----ALRSFIANECPLMVATDVAARGLDIGgvTHVINFDMArDVESYVHRIGRTGRAGK 136
                 3444444.444588999************************9888....599*9765555554....5************************642455556776357889999999888665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (190 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       155  (0.0377864); expected 82.0 (0.02)
Passed bias filter:                      151  (0.0368113); expected 82.0 (0.02)
Passed Vit filter:                        21  (0.00511945); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.24u 0.15s 00:00:00.39 Elapsed: 00:00:00.35
# Mc/sec: 716.51
//
Query:       MMETSP1137-20121227|5213_1  [L=166]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (166 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       657  (0.160166); expected 82.0 (0.02)
Passed bias filter:                      218  (0.0531448); expected 82.0 (0.02)
Passed Vit filter:                        59  (0.0143832); expected 4.1 (0.001)
Passed Fwd filter:                        16  (0.00390054); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.18s 00:00:00.60 Elapsed: 00:00:00.65
# Mc/sec: 337.08
//
Query:       MMETSP1137-20121227|5214_1  [L=525]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (525 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        87  (0.0212092); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.14s 00:00:00.49 Elapsed: 00:00:00.49
# Mc/sec: 1414.17
//
Query:       MMETSP1137-20121227|5215_1  [L=321]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (321 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        81  (0.0197465); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.16s 00:00:00.40 Elapsed: 00:00:00.38
# Mc/sec: 1114.96
//
Query:       MMETSP1137-20121227|5216_1  [L=451]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.017   10.6   0.3      0.022   10.3   0.2    1.0  1  TIGR02168 SMC_prok_B: chromosome segregation protein SMC
      0.081    9.9  11.3       0.15    9.0   3.0    2.2  2  TIGR00996 Mtu_fam_mce: virulence factor Mce family protein


Domain annotation for each model (and alignments):
>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.2   1.1e-05     0.022     367     481 ..     148     259 ..     125     291 .. 0.40

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 1.1e-05
   TIGR02168 367 leelesrleeleeeleelrsevaeleeqlaslnaelerleaeleqleerrerlkqeieelekkleeaeaelkelqeeleeleeeleeleeelerleealeeleeeleeaeqalqk 481
                 + el+  ++++ ++l+++++ +a ++ + asl+++l+ l ++l +l e  + l++ ++++   ++++++++++  +++++   + ++ +++ er+ ++l el+ el+ +++a+q+
  MMETSP1137-20121227|5216_1 148 VYELNVLVDTAADQLDDASDFLATARFSTASLRKNLTMLPSSLVALPEAAA-LSEAQRQQL--VNATRERMEAPLRDCDSALDAAADSASQIERATQTLDELRPELADVQRAIQD 259
                 333333333333333333333333333333333333333333333333321.111111111..1111222222222222222333333333333333333333333333333332 PP

>> TIGR00996  Mtu_fam_mce: virulence factor Mce family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   1.5   0.00081       1.7     168     236 ..     143     211 ..     127     217 .. 0.90
   2 ?    9.0   3.0   7.3e-05      0.15     183     266 ..     208     288 ..     200     297 .. 0.85

  Alignments for each domain:
  == domain 1    score: 5.6 bits;  conditional E-value: 0.00081
   TIGR00996 168 qlrelleglaqltaalnerdedigelidnlnrvldvladasdqldrlldnlatliaqladrsdaLddal 236
                 ++++++ +l+ l+++++++++d ++ ++ +   +++l ++   l + l  l++++a  ++++++L +a+
  MMETSP1137-20121227|5216_1 143 KINNSVYELNVLVDTAADQLDDASDFLATARFSTASLRKNLTMLPSSLVALPEAAALSEAQRQQLVNAT 211
                 799999999999999999999999999999999999999999999999999999999999999999886 PP

  == domain 2    score: 9.0 bits;  conditional E-value: 7.3e-05
   TIGR00996 183 lnerdedigelidnlnrvldvladasdqldrlldnlatliaqladrsdaLddalaalsalsaqvrdllaenrpnLaqalanLas 266
                 +n+ +e +++ ++   + ld+ ad++ q++r+ ++l +l   lad ++a++dal   ++ +aq+++ l++    +++al++  +
  MMETSP1137-20121227|5216_1 208 VNATRERMEAPLRDCDSALDAAADSASQIERATQTLDELRPELADVQRAIQDALFFSDDPIAQANASLQAD---FREALRSIGD 288
                 678888888899999999************************************99999999999888654...6666655555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (451 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       164  (0.0399805); expected 82.0 (0.02)
Passed bias filter:                      113  (0.0275475); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.16s 00:00:00.54 Elapsed: 00:00:00.54
# Mc/sec: 1102.35
//
Query:       MMETSP1137-20121227|5217_1  [L=222]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (222 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        73  (0.0177962); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.14s 00:00:00.33 Elapsed: 00:00:00.43
# Mc/sec: 681.43
//
Query:       MMETSP1137-20121227|5218_1  [L=46]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (46 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        54  (0.0131643); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.15s 00:00:00.25 Elapsed: 00:00:00.45
# Mc/sec: 134.92
//
Query:       MMETSP1137-20121227|5219_1  [L=402]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.7e-09   34.1   0.0    5.8e-08   30.1   0.0    2.2  1  TIGR03868 F420-O_ABCperi: proposed F420-0 ABC transporter, periplasmic F420-0 binding protein
     0.0089   13.1   0.0      0.099    9.6   0.0    2.0  2  TIGR03659 IsdE: heme ABC transporter, heme-binding protein isdE


Domain annotation for each model (and alignments):
>> TIGR03868  F420-O_ABCperi: proposed F420-0 ABC transporter, periplasmic F420-0 binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.1   0.0   2.8e-11   5.8e-08      19     284 ..      12     301 ..       3     304 .. 0.73

  Alignments for each domain:
  == domain 1    score: 30.1 bits;  conditional E-value: 2.8e-11
   TIGR03868  19 rvvtikssttelllalGlgdrivgtafadG.pvpeewaedaaa...........vavlservpseeavlelepdlvyaGwesnltaegageredlaklGvntyvapsackedgyqpdpltfddvlaeieevgtifdvpdaaeelvaeqeaalaaiepdeaG....ltalwyssGsdtpfvGaGiGapqlvldaaGltniaa.d....vddtwtslsweavvdadpdvivlvdsawnsae..kkievlesnpvtaaltavkekryvvvdfaa..teaGvrsvdaaasladql 284
                 rvv++  s+te+l  +G +  +vg +++d  p    ++ +++             a++s  +   e+   l+  l+ +     + ++ + +   +    v+ + a    k      +pl f+d+l++ie+vg  ++ +++a+   ++ e +l a++   aG       l +   +d  +vG G  +pql++ a   + +   d      +   ++ +  +vd+ pd+i++  +  + a   + ++vl+ +    +l+av+e r ++vd  a    +G r vda   l+ ++
  MMETSP1137-20121227|5219_1  12 RVVSVLPSATEILCFIGGSHLLVGRSHEDNyPTNICHLPQVTGqkttfttsaevNAAVSASLGKGESLYLLDEALIKSLRPEVILTQDICKVCAIDLQTVERLAASMDPKPAVVSLNPLCFNDILKNIEQVGIAVGLQEQASLAREKLERRLRAVDDLVAGseptKLNLAFIEWTDPLYVG-GHWTPQLIVRAGASHPLNPpDgrggGANKSFPVPYSMLVDSAPDMIIFCPCGLDMAAirREVKVLQRQDWWHSLSAVREGRVALVDGDAmfNRPGPRLVDALEWLVSAV 301
                 888888888888888888888888888886343322322222223334444444566777777777777777778877766666666677777777777888888888888888999******************99999887777777778777765555111145789999***99**9.6789*****99877666431311113344558899**************998887761156678*********************987733578999999988887766 PP

>> TIGR03659  IsdE: heme ABC transporter, heme-binding protein isdE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.0      0.02        41      90     168 ..      87     173 ..      83     184 .. 0.63
   2 !    9.6   0.0   4.8e-05     0.099     220     266 ..     230     276 ..     217     297 .. 0.89

  Alignments for each domain:
  == domain 1    score: 1.0 bits;  conditional E-value: 0.02
   TIGR03659  90 iksLkpdvvlsvs.....tLeedledkfkel.nveaeflnle..sleslkksikelgekydreeqaeklvkeleekekevkkkvkkk 168
                 iksL+p+v+l+ +     +++ +  +++ ++ + + + + l+   ++++ k+i+++g   + +eqa+   ++le++ ++v + v++ 
  MMETSP1137-20121227|5219_1  87 IKSLRPEVILTQDickvcAIDLQTVERLAASmDPKPAVVSLNplCFNDILKNIEQVGIAVGLQEQASLAREKLERRLRAVDDLVAGS 173
                 677777776665411111333333333333224444444444115688999999999999999999999999999998888776665 PP

  == domain 2    score: 9.6 bits;  conditional E-value: 4.8e-05
   TIGR03659 220 lkkknPdiilraaHglpdevkkmfdeeFktndiWkkfeAvknnrvYd 266
                 l  + Pd+i+    gl   +++   +  +++d W+ ++Av+++rv  
  MMETSP1137-20121227|5219_1 230 LVDSAPDMIIFCPCGLDMAAIRREVKVLQRQDWWHSLSAVREGRVAL 276
                 67889***************************************965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (402 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       111  (0.02706); expected 82.0 (0.02)
Passed bias filter:                      103  (0.0251097); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.33u 0.13s 00:00:00.46 Elapsed: 00:00:00.91
# Mc/sec: 583.07
//
Query:       MMETSP1137-20121227|5220_1  [L=553]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (553 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       113  (0.0275475); expected 82.0 (0.02)
Passed bias filter:                      100  (0.0243784); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.15s 00:00:00.54 Elapsed: 00:00:00.43
# Mc/sec: 1697.44
//
Query:       MMETSP1137-20121227|5221_1  [L=573]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (573 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       223  (0.0543637); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.17s 00:00:00.59 Elapsed: 00:00:00.63
# Mc/sec: 1200.47
//
Query:       MMETSP1137-20121227|5222_1  [L=400]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (400 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        77  (0.0187713); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.15s 00:00:00.44 Elapsed: 00:00:00.36
# Mc/sec: 1466.55
//
Query:       MMETSP1137-20121227|5223_1  [L=163]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (163 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        98  (0.0238908); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.14s 00:00:00.31 Elapsed: 00:00:00.28
# Mc/sec: 741.87
//
Query:       MMETSP1137-20121227|5225_1  [L=126]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (126 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       162  (0.0394929); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.18s 00:00:00.35 Elapsed: 00:00:00.34
# Mc/sec: 489.14
//
Query:       MMETSP1137-20121227|5226_1  [L=471]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (471 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       132  (0.0321794); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.15s 00:00:00.46 Elapsed: 00:00:00.49
# Mc/sec: 1268.71
//
Query:       MMETSP1137-20121227|5227_1  [L=403]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (403 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        71  (0.0173086); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.15s 00:00:00.41 Elapsed: 00:00:00.41
# Mc/sec: 1297.36
//
Query:       MMETSP1137-20121227|5228_1  [L=205]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.9e-18   63.0   0.0    1.2e-17   62.2   0.0    1.3  1  TIGR01829 AcAcCoA_reduct: acetoacetyl-CoA reductase
    3.1e-15   54.4   0.0    5.2e-15   53.6   0.0    1.5  1  TIGR01830 3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase
    8.1e-14   49.5   0.0      1e-13   49.2   0.0    1.2  1  TIGR01832 kduD: 2-deoxy-D-gluconate 3-dehydrogenase
    2.1e-12   44.7   0.0    2.4e-12   44.5   0.0    1.1  1  TIGR01963 PHB_DH: 3-hydroxybutyrate dehydrogenase
    3.1e-12   44.3   0.0    3.7e-12   44.0   0.0    1.2  1  TIGR02415 23BDH: acetoin reductases
    5.2e-11   40.0   0.0    8.9e-11   39.2   0.0    1.4  1  TIGR02685 pter_reduc_Leis: pteridine reductase
    1.1e-10   39.1   0.0    1.4e-10   38.8   0.0    1.1  1  TIGR03206 benzo_BadH: 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase
    1.9e-10   38.3   0.0    3.8e-10   37.4   0.0    1.4  1  TIGR01831 fabG_rel: putative 3-oxoacyl-(acyl-carrier-protein) reductase
    4.2e-09   34.1   0.0    5.1e-09   33.8   0.0    1.2  1  TIGR03971 SDR_subfam_1: oxidoreductase, SDR family
    1.8e-07   27.8   0.0    1.8e-07   27.8   0.0    1.1  1  TIGR02632 RhaD_aldol-ADH: rhamnulose-1-phosphate aldolase/alcohol dehydrogenase


Domain annotation for each model (and alignments):
>> TIGR01829  AcAcCoA_reduct: acetoacetyl-CoA reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.2   0.0     3e-20   1.2e-17     114     242 .]      64     204 ..      51     204 .. 0.81

  Alignments for each domain:
  == domain 1    score: 62.2 bits;  conditional E-value: 3e-20
   TIGR01829 114 fnvtrpviegmlergfGriinissvnGlkGqfGqanys...aakaGliGftkalaqegakkgvtvnviaPGyiatemvkavre.....dvlk.....kivaqiPvkrlgkpeeiaaavaflaseeagyvtGatlsvnGGlym 242
                   +t+  ++ m++++ Gri+ +s       q+ ++ y      ka +  + +  a   ak+g+t+n+++PGy++t+   + r      d+ +     ++ +  P+kr ++p+eia+++ fl++e++g +tGa + v+GGl++
  MMETSP1137-20121227|5228_1  64 VALTEGCLQRMADKQ-GRIVCVSNPGCNTLQAPRVGYDmpgQGKATMEYIVRIYALRLAKRGLTINAVSPGYTDTKEWDKARRqmgggDIEAgrrvlDVLSRSPMKRWAHPDEIAQTIDFLCAEQSGLITGAFIPVDGGLHL 204
                 568889999999985.*******98777778888887522268999*****************************8766655412222333222122467788************************************985 PP

>> TIGR01830  3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.6   0.0   1.3e-17   5.2e-15     113     238 ..      65     202 ..       4     203 .. 0.82

  Alignments for each domain:
  == domain 1    score: 53.6 bits;  conditional E-value: 1.3e-17
   TIGR01830 113 nvtkavlkkmikkrsGriinissvvgllGnagqanYa...asKaGligltkslakElasrnitvnavaPGfietdmteklsekv.....kk.....kileqiplkrlgkpeevaaavafLasdeasyitGqvlkvdGGl 238
                  +t+  l++m   ++Gri+ +s     + +a  + Y      Ka +  + + +a  la+r++t+nav+PG+ +t+  +k   ++     ++     ++l++ p+kr ++p+e+a+++ fL+ +++  itG+ + vdGGl
  MMETSP1137-20121227|5228_1  65 ALTEGCLQRMAD-KQGRIVCVSNPGCNTLQAPRVGYDmpgQGKATMEYIVRIYALRLAKRGLTINAVSPGYTDTKEWDKARRQMgggdiEAgrrvlDVLSRSPMKRWAHPDEIAQTIDFLCAEQSGLITGAFIPVDGGL 202
                 455566666665.89******99988888899999962225799999999************************9988877665222211122222578999************************************8 PP

>> TIGR01832  kduD: 2-deoxy-D-gluconate 3-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.2   0.0   2.5e-16     1e-13     157     244 ..     106     201 ..      59     205 .] 0.87

  Alignments for each domain:
  == domain 1    score: 49.2 bits;  conditional E-value: 2.5e-16
   TIGR01832 157 ksavaGltkllanewakkginvnaiaPGyletnntealra.....d...ekrnaaileriPagrwGepedlagaavflassasdyvnGailavdGG 244
                 k ++  + ++ a  +ak+g+ +na++PGy +t++ ++ r      d    +r  ++l+r P  rw +p+++a+++ fl ++ s  ++Ga ++vdGG
  MMETSP1137-20121227|5228_1 106 KATMEYIVRIYALRLAKRGLTINAVSPGYTDTKEWDKARRqmgggDieaGRRVLDVLSRSPMKRWAHPDEIAQTIDFLCAEQSGLITGAFIPVDGG 201
                 66777899*************************99888862222222213688899***************************************9 PP

>> TIGR01963  PHB_DH: 3-hydroxybutyrate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.5   0.0   5.9e-15   2.4e-12      99     252 ..      49     202 ..       3     205 .] 0.77

  Alignments for each domain:
  == domain 1    score: 44.5 bits;  conditional E-value: 5.9e-15
   TIGR01963  99 tekfekiiavnltsafhtiraalpimkkqgwGriiniasvhglvasafKsaYv...aaKHglvGltKvlAlEvAetgitanaicPgyvrtpLvekqiadqaktrgiseeqvvkevllkkqptkrfvtveevaelalflasdaaaqitGqalsldgGw 252
                 +  +++ +++  ++ + +++  l  m + + Gri+ ++        a +  Y      K ++  + ++ Al  A+ g+t na+ Pgy +t+  +k    q+   +i+  + v +v l+++p kr  +++e+a+++ fl+++++  itG+ + +dgG 
  MMETSP1137-20121227|5228_1  49 FTVYDAYQSIYPKAFVALTEGCLQRMAD-KQGRIVCVSNPGCNTLQAPRVGYDmpgQGKATMEYIVRIYALRLAKRGLTINAVSPGYTDTKEWDK-ARRQMGGGDIEAGRRVLDV-LSRSPMKRWAHPDEIAQTIDFLCAEQSGLITGAFIPVDGGL 202
                 4567888888888888889999999976.56*****998777777777888862225788899999************************98776.4677888889888888887.6899***********************************96 PP

>> TIGR02415  23BDH: acetoin reductases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.0   0.0     9e-15   3.7e-12     160     252 ..     112     203 ..      66     205 .] 0.88

  Alignments for each domain:
  == domain 1    score: 44.0 bits;  conditional E-value: 9e-15
   TIGR02415 160 ltqtaakeLakkgitvnayaPGivktemreeideklaelagkeigekleefsseiklGresePedvaelvsflasedsdyitGqsilvdGGlv 252
                 + +  a  Lak+g t+na +PG  +t+ +++  +++    ++e g+++ ++ s+  + r  +P+++a+ + fl +e+s  itG  i vdGGl 
  MMETSP1137-20121227|5228_1 112 IVRIYALRLAKRGLTINAVSPGYTDTKEWDKARRQMGG-GDIEAGRRVLDVLSRSPMKRWAHPDEIAQTIDFLCAEQSGLITGAFIPVDGGLH 203
                 55666889***********************9888865.56899999999*****************************************96 PP

>> TIGR02685  pter_reduc_Leis: pteridine reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.2   0.0   2.2e-13   8.9e-11     146     265 ..      75     205 .]      39     205 .] 0.79

  Alignments for each domain:
  == domain 1    score: 39.2 bits;  conditional E-value: 2.2e-13
   TIGR02685 146 aelrssnlsivnlvdamtdqpllgfslytmakealeGltrsaalelaslqirvngvapGlsll......pdampeevkeeyrrkvpl.....gqreasaeqiadvviflvskkakyitGtiikvdGGlslv 265
                 a+++++ + + n      + p +g+ +   +k ++e + r  al la +++ +n+v+pG +          +m+    e  rr + +      +r a  ++ia+ + fl++++++ itG+ i vdGGl l+
  MMETSP1137-20121227|5228_1  75 ADKQGRIVCVSNPGCNTLQAPRVGYDMPGQGKATMEYIVRIYALRLAKRGLTINAVSPGYTDTkewdkaRRQMGGGDIEAGRRVLDVlsrspMKRWAHPDEIAQTIDFLCAEQSGLITGAFIPVDGGLHLA 205
                 45556666666766667789***************************************97541111114679999999999987652222235668899****************************985 PP

>> TIGR03206  benzo_BadH: 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.8   0.0   3.4e-13   1.4e-10     129     249 ..      76     203 ..      51     204 .. 0.77

  Alignments for each domain:
  == domain 1    score: 38.8 bits;  conditional E-value: 3.4e-13
   TIGR03206 129 rkagrivniasdaarvgssgeavyaa...ckgglvafsktlarelarhgitvnvvcpgptdtalledvksea.....ekpeklieaftraiplgrlgkpddlagailflasddaafitgqvlsvsgglt 249
                  k+griv ++   + +  +    y +    k  +  + +  a  la++g+t+n v pg tdt   +    +      e + ++++ ++r+ p+ r  +pd++a +i fl+++++++itg  + v ggl 
  MMETSP1137-20121227|5228_1  76 DKQGRIVCVSNPGCNTLQAPRVGYDMpgqGKATMEYIVRIYALRLAKRGLTINAVSPGYTDTKEWDKARRQMgggdiEAGRRVLDVLSRS-PMKRWAHPDEIAQTIDFLCAEQSGLITGAFIPVDGGLH 203
                 37899999887777666666666655111455555667888999********************99876543111124566888888887.************************************96 PP

>> TIGR01831  fabG_rel: putative 3-oxoacyl-(acyl-carrier-protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.4   0.0   9.2e-13   3.8e-10     125     238 ..      75     202 ..      51     203 .. 0.79

  Alignments for each domain:
  == domain 1    score: 37.4 bits;  conditional E-value: 9.2e-13
   TIGR01831 125 arkggriitlasvsgvmgnrgqvnys...aakagligatkalavelakrkitvnciapglidtemvaevekdl...........kealklvpmkrvgkaeevaalaaflmsddaayvtrqvisvnggm 238
                 a k gri+ ++       +  +v y      ka +    +  a+ lakr +t+n ++pg  dt+  ++  +++            + l+  pmkr  +++e+a  + fl +++++ +t   i v+gg+
  MMETSP1137-20121227|5228_1  75 ADKQGRIVCVSNPGCNTLQAPRVGYDmpgQGKATMEYIVRIYALRLAKRGLTINAVSPGYTDTKEWDKARRQMgggdieagrrvLDVLSRSPMKRWAHPDEIAQTIDFLCAEQSGLITGAFIPVDGGL 202
                 457799999988777677777888862225799999999************************9887776655222222111114678889***********************************96 PP

>> TIGR03971  SDR_subfam_1: oxidoreductase, SDR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.8   0.0   1.2e-11   5.1e-09     176     264 ..     112     202 ..      68     203 .. 0.83

  Alignments for each domain:
  == domain 1    score: 33.8 bits;  conditional E-value: 1.2e-11
   TIGR03971 176 ltktlanelaeygirvnsihPtsvdtamiepeamrelfakreeaaraf...lpalpvsglvepedvadvvawlasdesryitGaqlavdaGa 264
                 +++  a+ la+ g+ +n+++P   dt+  + +a r++     ea r     l+  p++ + +p+++a+ + +l++++s  itGa ++vd G 
  MMETSP1137-20121227|5228_1 112 IVRIYALRLAKRGLTINAVSPGYTDTKEWD-KARRQMGGGDIEAGRRVldvLSRSPMKRWAHPDEIAQTIDFLCAEQSGLITGAFIPVDGGL 202
                 56778999********************99.899999986666655554668999**********************************995 PP

>> TIGR02632  RhaD_aldol-ADH: rhamnulose-1-phosphate aldolase/alcohol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.8   0.0   4.3e-10   1.8e-07     541     672 ..      74     204 ..       3     205 .] 0.70

  Alignments for each domain:
  == domain 1    score: 27.8 bits;  conditional E-value: 4.3e-10
   TIGR02632 541 kqglggnlvfiasknavvakknalays...aakaaeahlvrllaielaelgirvntvaPdavlrGsgifagewrekraaaygieadkleefykkrsllkrevlpediaeavfllasdklekttGliitvdaGvaa 672
                   +  g +v ++   + + +   + y+     ka+  ++vr+ a+ la+ g+ +n+v P      ++ +++++r+      +iea +       rs +kr   p++ia+++ +l ++++   tG +i+vd+G++ 
  MMETSP1137-20121227|5228_1  74 MADKQGRIVCVSNPGCNTLQAPRVGYDmpgQGKATMEYIVRIYALRLAKRGLTINAVSPGY--TDTKEWDKARRQMG--GGDIEAGRRVLDVLSRSPMKRWAHPDEIAQTIDFLCAEQSGLITGAFIPVDGGLHL 204
                 445556677666543333333344454222579**************************85..57888999888655..556776666666789**************************************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (205 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       105  (0.0255973); expected 82.0 (0.02)
Passed bias filter:                      104  (0.0253535); expected 82.0 (0.02)
Passed Vit filter:                        18  (0.0043881); expected 4.1 (0.001)
Passed Fwd filter:                        10  (0.00243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.28u 0.16s 00:00:00.44 Elapsed: 00:00:00.51
# Mc/sec: 530.54
//
Query:       MMETSP1137-20121227|5229_1  [L=341]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (341 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        67  (0.0163335); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.17s 00:00:00.43 Elapsed: 00:00:00.42
# Mc/sec: 1071.63
//
Query:       MMETSP1137-20121227|5230_1  [L=664]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (664 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       115  (0.0280351); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.13s 00:00:00.54 Elapsed: 00:00:00.65
# Mc/sec: 1348.32
//
Query:       MMETSP1137-20121227|5231_1  [L=174]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.4e-06   25.0   0.1    7.5e-06   23.5   0.1    1.7  1  TIGR02191 RNaseIII: ribonuclease III


Domain annotation for each model (and alignments):
>> TIGR02191  RNaseIII: ribonuclease III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.5   0.1   1.8e-09   7.5e-06      32     123 ..      48     149 ..      40     163 .. 0.73

  Alignments for each domain:
  == domain 1    score: 23.5 bits;  conditional E-value: 1.8e-09
   TIGR02191  32 knnerLEFLGDavLelvvaeyLfkkfpkakeGeltklraklVseeslaelak.....elklgeflllgkgeeksggrer.....esiladafEAligAiYld 123
                  ++erLE+LGDavL+l+   +++ +++ +++  l+ +   l s+  l++l        l l++   lg++  +    +r     ++  ad++EA +gA++ +
  MMETSP1137-20121227|5231_1  48 PDYERLEWLGDAVLRLLSVCAVMARKRLHSVKVLAPAAERLLSNLPLSMLRLsaclaTLLLRNPFELGRKHASPLPMQRrqlvsRKQXADMVEAALGAVFAS 149
                 68****************999999999999999999999998887666543311222444666667777766544444401111456789999999999976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (174 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        58  (0.0141394); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.17u 0.12s 00:00:00.29 Elapsed: 00:00:00.36
# Mc/sec: 637.95
//
Query:       MMETSP1137-20121227|5232_1  [L=786]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (786 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       133  (0.0324232); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.47u 0.14s 00:00:00.61 Elapsed: 00:00:00.59
# Mc/sec: 1758.36
//
Query:       MMETSP1137-20121227|5233_1  [L=426]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (426 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       161  (0.0392491); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.14s 00:00:00.45 Elapsed: 00:00:00.64
# Mc/sec: 878.55
//
Query:       MMETSP1137-20121227|5234_1  [L=196]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (196 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       105  (0.0255973); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.12s 00:00:00.31 Elapsed: 00:00:00.31
# Mc/sec: 834.51
//
Query:       MMETSP1137-20121227|5235_1  [L=84]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (84 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        56  (0.0136519); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.15s 00:00:00.27 Elapsed: 00:00:00.62
# Mc/sec: 178.82
//
Query:       MMETSP1137-20121227|5236_1  [L=290]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (290 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        70  (0.0170648); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.14s 00:00:00.39 Elapsed: 00:00:00.56
# Mc/sec: 683.51
//
Query:       MMETSP1137-20121227|5237_1  [L=236]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (236 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        61  (0.0148708); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.15s 00:00:00.36 Elapsed: 00:00:00.36
# Mc/sec: 865.26
//
Query:       MMETSP1137-20121227|5238_1  [L=141]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (141 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        40  (0.00975134); expected 82.0 (0.02)
Passed bias filter:                       38  (0.00926377); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.11s 00:00:00.27 Elapsed: 00:00:00.35
# Mc/sec: 531.73
//
Query:       MMETSP1137-20121227|5239_1  [L=422]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (422 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       127  (0.0309605); expected 82.0 (0.02)
Passed bias filter:                      118  (0.0287665); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.18s 00:00:00.50 Elapsed: 00:00:00.86
# Mc/sec: 647.67
//
Query:       MMETSP1137-20121227|5240_1  [L=479]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (479 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       210  (0.0511945); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.17s 00:00:00.50 Elapsed: 00:00:00.48
# Mc/sec: 1317.14
//
Query:       MMETSP1137-20121227|5241_1  [L=437]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.046   10.8   0.0      0.068   10.3   0.0    1.2  1  TIGR03869 F420-0_ABCperm: proposed F420-0 ABC transporter, permease protein


Domain annotation for each model (and alignments):
>> TIGR03869  F420-0_ABCperm: proposed F420-0 ABC transporter, permease protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   1.7e-05     0.068      51      88 ..     140     177 ..     120     186 .. 0.85

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 1.7e-05
   TIGR03869  51 elrlprvltaaavGaGlalaGavmqsltrnpladpyll 88 
                  ++l rvlt  +v a l + Gav q++ r+  a   l+
  MMETSP1137-20121227|5241_1 140 SGQLSRVLTHRFVVATLEIPGAVAQAVEREDAARKDLI 177
                 46799************************988876666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (437 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        51  (0.012433); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.31u 0.17s 00:00:00.48 Elapsed: 00:00:00.42
# Mc/sec: 1373.32
//
Query:       MMETSP1137-20121227|5242_1  [L=384]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.6e-64  215.7   0.0    2.5e-64  215.1   0.0    1.3  1  TIGR00436 era: GTP-binding protein Era
      5e-25   86.2   0.0    2.5e-22   77.3   0.0    2.0  2  TIGR03594 GTPase_EngA: ribosome-associated GTPase EngA
    3.7e-15   53.9   0.0      6e-15   53.2   0.0    1.4  1  TIGR00231 small_GTP: small GTP-binding protein domain
    6.9e-13   46.3   0.0    1.1e-12   45.6   0.0    1.3  1  TIGR00450 mnmE_trmE_thdF: tRNA modification GTPase TrmE
    1.5e-12   45.3   0.0    1.2e-11   42.3   0.0    2.1  3  TIGR03596 GTPase_YlqF: ribosome biogenesis GTP-binding protein YlqF
    3.7e-10   37.0   0.0      1e-09   35.6   0.0    1.6  1  TIGR03918 GTP_HydF: [FeFe] hydrogenase H-cluster maturation GTPase HydF
    2.6e-09   34.4   0.0    5.2e-09   33.4   0.0    1.5  1  TIGR02729 Obg_CgtA: Obg family GTPase CgtA
    1.5e-08   32.0   1.6    0.00011   19.4   0.0    2.5  3  TIGR03597 GTPase_YqeH: ribosome biogenesis GTPase YqeH
    8.4e-08   29.3   0.0    1.2e-07   28.8   0.0    1.2  1  TIGR03156 GTP_HflX: GTP-binding protein HflX
    1.4e-05   22.7   0.0    3.8e-05   21.3   0.0    1.7  1  TIGR03598 GTPase_YsxC: ribosome biogenesis GTP-binding protein YsxC
    0.00017   18.3   0.1    0.00028   17.5   0.0    1.4  1  TIGR00437 feoB: ferrous iron transport protein B
    0.00036   17.6   0.1       0.21    8.5   0.0    2.2  2  TIGR00750 lao: LAO/AO transport system ATPase
     0.0009   16.2   0.3     0.0017   15.3   0.1    1.4  2  TIGR00991 3a0901s02IAP34: GTP-binding protein
     0.0034   14.4   0.0     0.0063   13.5   0.0    1.4  1  TIGR00092 TIGR00092: GTP-binding protein YchF
     0.0048   14.0   0.0     0.0073   13.4   0.0    1.2  1  TIGR01526 nadR_NMN_Atrans: nicotinamide-nucleotide adenylyltransferase
     0.0096   13.0   0.0       0.04   10.9   0.0    1.8  2  TIGR03680 eif2g_arch: translation initiation factor 2, gamma subunit
  ------ inclusion threshold ------
      0.017   11.1   0.1      0.023   10.7   0.1    1.1  1  TIGR00993 3a0901s04IAP86: chloroplast protein import component Toc86/159, G and M domains
      0.025   11.9   0.1      0.078   10.3   0.0    1.9  2  TIGR00073 hypB: hydrogenase accessory protein HypB
      0.026   12.0   0.0      0.051   11.0   0.0    1.4  1  TIGR03263 guanyl_kin: guanylate kinase
      0.028   12.5   0.0       0.12   10.5   0.0    2.1  1  TIGR02528 EutP: ethanolamine utilization protein, EutP


Domain annotation for each model (and alignments):
>> TIGR00436  era: GTP-binding protein Era
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  215.1   0.0   1.2e-66   2.5e-64       1     270 []      83     365 ..      83     365 .. 0.89

  Alignments for each domain:
  == domain 1    score: 215.1 bits;  conditional E-value: 1.2e-66
   TIGR00436   1 gfvailGrpnvGKSTLlNkllgqkisivSpkaqTTrnrisgiltegasqiifiDtPGlhekkhklnellvkeirkalsevdlilfvvdsdeknkedellleklqklkap..vvlalnkldnkekdkllelidkeasllefk............eiveisalkgenveelkaiveaklregpfyypedyvtdqeerFkisEiiREkilkllkeEiPysvaveieekklnekgslkiaalilVeresQKkiiiGkkgkkikaiGieaRkkleklfdakvflelfVk 270
                 gf++i+G pnvGKSTL+N l+g+  +i+ pkaqTTr+ri gi+  +  qi++ DtPG+  ++ kl e ++  +r +l + d +l+ vd  ++   d+ +l ++  l ++  +++++nk+d   + + l++ ++ ++  e +            +++++sa ++  v+ l   + a l+e + y+p+d++td++erF ++E++RE i++  ++E+Pys +v + ++k+ e   ++i+  i V+++sQK+iiiG+kg+ +ka+G++aRk+le++f  kv+le  Vk
  MMETSP1137-20121227|5242_1  83 GFISIVGVPNVGKSTLMNCLVGERLAITTPKAQTTRHRILGIVNGEDFQIVYSDTPGVVVPQYKLHEGMMASVRGSLTDADAVLLTVDVFQEDFVDDAILRQIXALARRsaRLVIVNKVDLLREGSPLSESRRIEIGSEEQildrwrqkfpsaSVIPVSATTKVGVDDLFDRLLAVLPEHEPYFPKDQLTDRPERFFAAEMVREAIMNGYRHEVPYSCEVVVTSFKELED-IIRINCDIYVAQDSQKGIIIGHKGAALKAVGTRARKQLEEFFVKKVYLETRVK 365
                 79*******************************************************************************************9999*****999876422789******8755444443332222211111111223344449**************************************************************99999999987665.5************************************************9887 PP

>> TIGR03594  GTPase_EngA: ribosome-associated GTPase EngA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.3   0.0   1.2e-24   2.5e-22       3     164 ..      85     263 ..      83     274 .. 0.78
   2 !   14.6   0.0   1.3e-05    0.0027     283     365 ..     188     278 ..     177     307 .. 0.69

  Alignments for each domain:
  == domain 1    score: 77.3 bits;  conditional E-value: 1.2e-24
   TIGR03594   3 vaivGrpNVGKStLfNrlvkkrkAivedtpgvTRDrkygeaelkgkefiliDTgGleeeedelekeireqaelaieeadvilfvvdareglteeDeeiaklLrksk.kpvilvvNKvdnkkeeaeaaefyslGlg................evlaiSaehgrgikdLldeileelpeee 164
                 ++ivG pNVGKStL+N lv++r Ai+  ++ +TR r  g ++ ++ ++   DT+G+   + +l++ +++ ++ ++++ad++l+ vd+ ++   +D+ + ++   ++ +  +++vNKvd  +e + ++e  ++ +g                +v+++Sa+ + g++dL+d++l+ lpe+e
  MMETSP1137-20121227|5242_1  85 ISIVGVPNVGKSTLMNCLVGERLAITTPKAQTTRHRILGIVNGEDFQIVYSDTPGVVVPQYKLHEGMMASVRGSLTDADAVLLTVDVFQEDFVDDAILRQIXALARrSARLVIVNKVDLLREGSPLSESRRIEIGseeqildrwrqkfpsaSVIPVSATTKVGVDDLFDRLLAVLPEHE 263
                 89*************************************************************************************998777776665554333324557789****8766555444433332211111111111111226899999999999999999999998875 PP

  == domain 2    score: 14.6 bits;  conditional E-value: 1.3e-05
   TIGR03594 283 leegkalvivvNKwDlv.....kdekeleel...kkeleeklkflkfapivfiSAltgkgveklleaikevyeslskristsklnrvleea 365
                 l +  a +++vNK+Dl+      +e+++ e+   ++ l++  +++  a ++ +SA+t+ gv++l++ + +v  +++  ++  +l++  e+ 
  MMETSP1137-20121227|5242_1 188 LARRSARLVIVNKVDLLregspLSESRRIEIgseEQILDRWRQKFPSASVIPVSATTKVGVDDLFDRLLAVLPEHEPYFPKDQLTDRPERF 278
                 4566788999******96332212333333322133355666788999***********************99999999999998766654 PP

>> TIGR00231  small_GTP: small GTP-binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.2   0.0   2.9e-17     6e-15       5     160 ..      84     253 ..      80     257 .. 0.80

  Alignments for each domain:
  == domain 1    score: 53.2 bits;  conditional E-value: 2.9e-17
   TIGR00231   5 kivivGhvdvGKstLlnsllknkisiteskpgvtrdyvteqieedGktykvnllDTaG.qedfdairrlyvreverslevvdivilvldveeglekqt...keiiheakkkgvpiilvvnKiDlkd..............dlktkvkslfaklnaepiielsaetgknidklfk 160
                  i ivG ++vGKstL+n l ++  +it  k+++tr+ +     ++G+ +++ + DT+G  +   ++ + +++ v +sl ++d v+l +dv +    ++   ++i   a+   + +++ vnK+Dl                + ++   + ++k   +++i++sa t  ++d+lf+
  MMETSP1137-20121227|5242_1  84 FISIVGVPNVGKSTLMNCLVGERLAITTPKAQTTRHRILG--IVNGEDFQIVYSDTPGvVVPQYKLHEGMMASVRGSLTDADAVLLTVDVFQEDFVDDailRQIXALAR--RSARLVIVNKVDLLRegsplsesrrieigSEEQILDRWRQKFPSASVIPVSATTKVGVDDLFD 253
                 799************************************8..788989**********95555599******************9988875555455501155555555..999*********988788887777766555555555555555566688888888888888887 PP

>> TIGR00450  mnmE_trmE_thdF: tRNA modification GTPase TrmE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.6   0.0   5.5e-15   1.1e-12     211     330 ..      84     208 ..      75     290 .. 0.85

  Alignments for each domain:
  == domain 1    score: 45.6 bits;  conditional E-value: 5.5e-15
   TIGR00450 211 klaivGktNvGKSSLlNallkkdraiVsdikGttRDvvEedleleGilvkllDtAGiReaadkvEklGiekslkaikeadlvlyvlDaskpltkddeliitlkkk..kkdlllvlNKiDLa...e 330
                  ++ivG +NvGKS L+N l+ +  ai +    ttR  + + ++ e +++   Dt G+   + k+    +   + ++ +ad vl+++D+ ++   dd ++ +       +  l+++NK DL    +
  MMETSP1137-20121227|5242_1  84 FISIVGVPNVGKSTLMNCLVGERLAITTPKAQTTRHRILGIVNGEDFQIVYSDTPGVVVPQYKLHEGMMASVRGSLTDADAVLLTVDVFQEDFVDDAILRQIXALarRSARLVIVNKVDLLregS 208
                 49**************************************988777777778************9988888899*****************999998887766541145679999*****85331 PP

>> TIGR03596  GTPase_YlqF: ribosome biogenesis GTP-binding protein YlqF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.3   0.0     6e-14   1.2e-11     121     180 ..      85     147 ..      76     165 .. 0.81
   2 ?   -0.8   0.0      0.84   1.7e+02      41      62 ..     184     205 ..     181     209 .. 0.85
   3 ?   -3.2   0.0       4.4   9.1e+02      63     105 ..     222     262 ..     216     276 .. 0.77

  Alignments for each domain:
  == domain 1    score: 42.3 bits;  conditional E-value: 6e-14
   TIGR03596 121 alvvGiPNvGKStliNrlakkkvakvgnkpgvTksqqw.iklsk..eleLlDtPGilwpkled 180
                 + +vG+PNvGKStl+N l++++ a +  k+  T++    i  ++  ++   DtPG+++p+ + 
  MMETSP1137-20121227|5242_1  85 ISIVGVPNVGKSTLMNCLVGERLAITTPKAQTTRHRILgIVNGEdfQIVYSDTPGVVVPQYKL 147
                 569******************************997652333441345557*******99765 PP

  == domain 2    score: -0.8 bits;  conditional E-value: 0.84
   TIGR03596  41 eleelvknkprlivlnkaDlad 62 
                 ++  l+++  rl+++nk Dl  
  MMETSP1137-20121227|5242_1 184 QIXALARRSARLVIVNKVDLLR 205
                 6778888999*********975 PP

  == domain 3    score: -3.2 bits;  conditional E-value: 4.4
   TIGR03596  63 pektkkwlkyfeekgkkalavnakkkkkvkkilkaikkllkek 105
                 +++ ++w ++f +   +++ v+a++k +v  + + + ++l+e 
  MMETSP1137-20121227|5242_1 222 EQILDRWRQKFPS--ASVIPVSATTKVGVDDLFDRLLAVLPEH 262
                 5667888898885..5688889998888888888877777665 PP

>> TIGR03918  GTP_HydF: [FeFe] hydrogenase H-cluster maturation GTPase HydF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.6   0.0   4.9e-12     1e-09       9     133 ..      84     209 ..      75     273 .. 0.73

  Alignments for each domain:
  == domain 1    score: 35.6 bits;  conditional E-value: 4.9e-12
   TIGR03918   9 hialfGrrNaGKSsliNaltgqdvaivsdvpGtTtDpvekamEllplGpvvliDTaGldD.egeLGelRvektrevlektdlallvvdaeaeleeleeelleelk..ekkipvivvlnkidlkeeeke 133
                  i+++G  N+GKS+l+N l+g+ +ai+   + tT   +   +   ++  +v  DT+G+   + +L e  ++  r  l+ +d +ll vd   +   +++++l+++   +++   +v++nk+dl +e + 
  MMETSP1137-20121227|5242_1  84 FISIVGVPNVGKSTLMNCLVGERLAITTPKAQTTRHRILGIVNGEDF-QIVYSDTPGVVVpQYKLHEGMMASVRGSLTDADAVLLTVDVF-QEDFVDDAILRQIXalARRSARLVIVNKVDLLREGSP 209
                 599*********************************99999999998.57789****875499*************************88.5666777787776522467788999*****9887543 PP

>> TIGR02729  Obg_CgtA: Obg family GTPase CgtA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.4   0.0   2.5e-11   5.2e-09     160     326 ..      85     257 ..      83     260 .. 0.75

  Alignments for each domain:
  == domain 1    score: 33.4 bits;  conditional E-value: 2.5e-11
   TIGR02729 160 vglvGlpnaGkStllsavsaakpkiad.YpFtTlvPnLGvveveeeksfvlaDiPgli.egasegagLGleFLkHiertrvllhlidlseedekdpvedleviekeLkkyseeLaekpelvvlnkidllee.eel...........eellkelkeel.ekkvlaisaltkegleellkklle 326
                 +++vG+pn+GkStl++ +   +  i+     tT +  LG+v+ e+  ++v +D Pg++  + +   g+  +    ++ +  +l  +d+ +e   d v+d+  i +++ +      +  +lv++nk+dll+e + l           e++l++ ++++ + +v+ +sa+tk g+++l ++ll 
  MMETSP1137-20121227|5242_1  85 ISIVGVPNVGKSTLMNCLVGERLAITTpKAQTTRHRILGIVNGED-FQIVYSDTPGVVvPQYKLHEGMMASVRGSLTDADAVLLTVDVFQE---DFVDDA--ILRQIXALA---RRSARLVIVNKVDLLREgSPLsesrrieigseEQILDRWRQKFpSASVIPVSATTKVGVDDLFDRLLA 257
                 689****************999999872567999********999.9*********8625677789***********************99...777764..444444333...35678999*****9987533210001111111233344444448889999999999999999998876 PP

>> TIGR03597  GTPase_YqeH: ribosome biogenesis GTPase YqeH
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.0   5.2e-07   0.00011     160     218 ..      87     143 ..      78     154 .. 0.83
   2 !   11.7   0.0   0.00011     0.022      63     112 ..     160     212 ..     147     266 .. 0.65
   3 ?   -2.9   0.0         3   6.2e+02     112     163 ..     283     334 ..     279     335 .. 0.81

  Alignments for each domain:
  == domain 1    score: 19.4 bits;  conditional E-value: 5.2e-07
   TIGR03597 160 vvGvtNVGKSsliNkllklnkgkkkvittSkfpgTTldlieipldkesvll..DtpGiine 218
                 +vGv NVGKS+l+N l+    g++ +itt k + T   +  i   ++ +++  DtpG++  
  MMETSP1137-20121227|5242_1  87 IVGVPNVGKSTLMNCLV----GERLAITTPKAQTTRHRILGIVNGEDFQIVysDTPGVVVP 143
                 8****************....56668999999999999999988776666556****9865 PP

  == domain 2    score: 11.7 bits;  conditional E-value: 0.00011
   TIGR03597  63 ekkalvvavvDif..d.legslikelkrfvkenkvllvvNKidllpksvklek 112
                 ++   v+  vD+f  d +++++++++  ++++   l++vNK+dll + + l++
  MMETSP1137-20121227|5242_1 160 TDADAVLLTVDVFqeDfVDDAILRQIXALARRSARLVIVNKVDLLREGSPLSE 212
                 4566788899***55544788999*********************87654433 PP

  == domain 3    score: -2.9 bits;  conditional E-value: 3
   TIGR03597 112 kikewlkkeakeeglkpvdillvsakkkkglkellelikkarekkdvyvvGv 163
                  ++e + +  ++e  +  +++++s k+ +++ +++  i  a++ ++ +++G 
  MMETSP1137-20121227|5242_1 283 MVREAIMNGYRHEVPYSCEVVVTSFKELEDIIRINCDIYVAQDSQKGIIIGH 334
                 5667777777777777889999999999999999999999999999999995 PP

>> TIGR03156  GTP_HflX: GTP-binding protein HflX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.8   0.0   5.9e-10   1.2e-07     191     347 ..      84     255 ..      75     259 .. 0.74

  Alignments for each domain:
  == domain 1    score: 28.8 bits;  conditional E-value: 5.9e-10
   TIGR03156 191 tvalvGYTNaGKstllnaltkaevlaedklFATLdpttrrlklpeeeevlltDTVGFi...rkLPheLveaFkaTLeevaeadlllhvvDasdeeaeeqieaveevLeelga..eeipvllvlNkidkle...............eeeleeleekk...........eeavlvsAkkgegleeLleai 347
                  +++vG  N GKstl+n l++++         T    +  +   e  +++ +DT G +    kL + ++++ +  L   ++ad +l  vD+ +e++ +      ++L+++ a  ++  +l+++Nk+d+l+               e        ++           ++ + vsA+++ g+++L +++
  MMETSP1137-20121227|5242_1  84 FISIVGVPNVGKSTLMNCLVGERLAITTPKAQTTRHRILGIVNGEDFQIVYSDTPGVVvpqYKLHEGMMASVRGSL---TDADAVLLTVDVFQEDFVDD-----AILRQIXAlaRRSARLVIVNKVDLLRegsplsesrrieigsE--------EQildrwrqkfpsASVIPVSATTKVGVDDLFDRL 255
                 69*******************99988888778878888888888889**********9444488999999999887...579999999***99999875.....5677766511455899********997777765333333321........2222222222333348889999999999887766 PP

>> TIGR03598  GTPase_YsxC: ribosome biogenesis GTP-binding protein YsxC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3   0.0   1.8e-07   3.8e-05      16     184 ..      80     254 ..      70     256 .. 0.66

  Alignments for each domain:
  == domain 1    score: 21.3 bits;  conditional E-value: 1.8e-07
   TIGR03598  16 dklpeiafaGrSNvGKSsliNaLtnrkklartSktPGrTqlinffevne...elrlvDlPGYGyakvskeekekwqklieeYLekrenLkgvvllvDirhelkelDlellellkea.kipvlvvltKaDklkkselkkalkkvk........kelkkeeekvevllfSslkkegieelkae 184
                 +++  i ++G  NvGKS+l+N L++++ la t  +   T++  +  vn    +++  D PG    +   + +e +++ ++  L++     +v+l vD+ +e   +D  l ++ + a +   lv+++K+D l++++  ++ ++++        ++ +++  +++v+ +S+++k g+++l ++
  MMETSP1137-20121227|5242_1  80 HRAGFISIVGVPNVGKSTLMNCLVGER-LAITTPKAQTTRHRILGIVNGedfQIVYSDTPGVVVPQ--YKLHEGMMASVRGSLTDA---DAVLLTVDVFQEDFVDDAILRQIXALArRSARLVIVNKVDLLREGSPLSESRRIEigseeqilDRWRQKFPSASVIPVSATTKVGVDDLFDR 254
                 55566999*****************98.99999888888775554443321455666999964433..345566666666666655...57889999988877777777776654414556788999999988765554444431111100034444445678999999999999988765 PP

>> TIGR00437  feoB: ferrous iron transport protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.0   1.4e-06   0.00028       1      52 [.      89     141 ..      89     290 .. 0.72

  Alignments for each domain:
  == domain 1    score: 17.5 bits;  conditional E-value: 1.4e-06
   TIGR00437   1 GnpNvGKstlfnaLtgsnqkvgNwpG.vTVekkegklelkgedieiv..DlPGiY 52 
                 G pNvGKstl+n L g+++++      +T  +  g ++  ged++iv  D+PG+ 
  MMETSP1137-20121227|5242_1  89 GVPNVGKSTLMNCLVGERLAITTPKAqTTRHRILGIVN--GEDFQIVysDTPGVV 141
                 78*******************98655045556666666..555555555****84 PP

>> TIGR00750  lao: LAO/AO transport system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.5   0.0     0.001      0.21      32      55 ..      80     103 ..      74     110 .. 0.83
   2 !    7.0   0.0     0.003      0.61     175     260 ..     194     286 ..     185     323 .. 0.67

  Alignments for each domain:
  == domain 1    score: 8.5 bits;  conditional E-value: 0.001
   TIGR00750  32 GrahvvGltGvPGaGkstlvekli 55 
                  ra  + + GvP +Gkstl++ l+
  MMETSP1137-20121227|5242_1  80 HRAGFISIVGVPNVGKSTLMNCLV 103
                 5788899************99876 PP

  == domain 2    score: 7.0 bits;  conditional E-value: 0.003
   TIGR00750 175 DivvvnkaDkeeaek..erlarlelsldleelferekgW.rPkvlktsavegrGikelvdai....eehkkvlkksGkleekrrersveelkk 260
                  +v+vnk D            r e+ +++++l + ++++    v+ +sa+++ G+++l d +     eh  +  k  + ++  r    e++++
  MMETSP1137-20121227|5242_1 194 RLVIVNKVDLLREGSplSESRRIEIGSEEQILDRWRQKFpSASVIPVSATTKVGVDDLFDRLlavlPEHEPYFPKDQLTDRPERFFAAEMVRE 286
                 6899999997555442256666677777766655444442678***************99751111456666555555555555555555555 PP

>> TIGR00991  3a0901s02IAP34: GTP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.1   8.5e-06    0.0017      41     140 ..      85     181 ..      81     200 .. 0.74
   2 ?   -3.5   0.0       4.4   8.9e+02     140     196 ..     284     341 ..     282     347 .. 0.67

  Alignments for each domain:
  == domain 1    score: 15.3 bits;  conditional E-value: 8.5e-06
   TIGR00991  41 ilvmgkggvgksstvnsiigervaavsafqseglrp.vlvsrtragftlniidtpglieggyindqavniikrflldktidvllyvdrldayrvddldkqv 140
                 i ++g   vgks+ +n ++ger+a  ++ +++  r  +l       f +   dtpg++   y  +  +    r  l  +  vll vd ++   vdd    +
  MMETSP1137-20121227|5242_1  85 ISIVGVPNVGKSTLMNCLVGERLAITTP-KAQTTRHrILGIVNGEDFQIVYSDTPGVVVPQYKLHEGMMASVRGSLTDADAVLLTVDVFQEDFVDD---AI 181
                 56789999**************975555.5555555055556677899999********9997777666666666777778999998665555554...33 PP

  == domain 2    score: -3.5 bits;  conditional E-value: 4.4
   TIGR00991 140 vvkaitdsfgkeiwkkslvvlt.haqlsppdgleyneffskrseallkvirsgaslkk 196
                 v +ai + + +e+   + vv+t   +l     ++ + ++++ s+  + + + ga+lk 
  MMETSP1137-20121227|5242_1 284 VREAIMNGYRHEVPYSCEVVVTsFKELEDIIRINCDIYVAQDSQKGIIIGHKGAALKA 341
                 5567777777777555544444156677777778888888888887777788887775 PP

>> TIGR00092  TIGR00092: GTP-binding protein YchF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   0.0   3.1e-05    0.0063       6      27 ..      86     107 ..      81     119 .. 0.87

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 3.1e-05
   TIGR00092   6 GivGLpnvGkstlfqaitkakl 27 
                  ivG+pnvGkstl + ++  +l
  MMETSP1137-20121227|5242_1  86 SIVGVPNVGKSTLMNCLVGERL 107
                 59*************9987665 PP

>> TIGR01526  nadR_NMN_Atrans: nicotinamide-nucleotide adenylyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.0   3.5e-05    0.0073     154     274 ..      74     198 ..      72     214 .. 0.74

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 3.5e-05
   TIGR01526 154 prevrpfFvktvailGgestGkstLvrkla.e..klnttsaeeyareyeeaklggdealkysdyakivlGqadaedaavrsadkvvfiDtDai..ttqvfaklyegreePllkkliaeerfDlvll 274
                 p+  +p+ +  ++i+G    GkstL++ l  e   + t+ a+   +      +g+d ++ ysd + +v  q++ ++  + s     + D Da+  t  vf + +   +       +a++   lv++
  MMETSP1137-20121227|5242_1  74 PTSTKPHRAGFISIVGVPNVGKSTLMNCLVgErlAITTPKAQTTRHRILGIVNGEDFQIVYSDTPGVVVPQYKLHEGMMASVR-GSLTDADAVllTVDVFQEDFVDDAILRQIXALARRSARLVIV 198
                 67889999*******************986232235666666666666677788888****************9998876655.456777765226677888777775555555566666655555 PP

>> TIGR03680  eif2g_arch: translation initiation factor 2, gamma subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0       1.1   2.3e+02       8      30 ..      85     107 ..      81     121 .. 0.86
   2 !   10.9   0.0    0.0002      0.04     139     200 ..     195     263 ..     148     273 .. 0.73

  Alignments for each domain:
  == domain 1    score: -1.4 bits;  conditional E-value: 1.1
   TIGR03680   8 iglvGhvDhGkttlvkaltGvwt 30 
                 i++vG  + Gk+tl++ l G  +
  MMETSP1137-20121227|5242_1  85 ISIVGVPNVGKSTLMNCLVGERL 107
                 889999999*******9999765 PP

  == domain 2    score: 10.9 bits;  conditional E-value: 0.0002
   TIGR03680 139 vivqnkidlvskekalenyeeikefvkgtv.......aenapiiPvsalkkvnidvllealekeiptpe 200
                 +++ nk+dl  +   l + ++i+   ++++          a +iPvsa+ kv +d l++ l  ++p+ e
  MMETSP1137-20121227|5242_1 195 LVIVNKVDLLREGSPLSESRRIEIGSEEQIldrwrqkFPSASVIPVSATTKVGVDDLFDRLLAVLPEHE 263
                 456699999999888888888764444333111122224699*****************9999988766 PP

>> TIGR00993  3a0901s04IAP86: chloroplast protein import component Toc86/159, G and M domains
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.1   0.00011     0.023     121     198 ..      85     160 ..      81     199 .. 0.67

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 0.00011
   TIGR00993 121 ilvlGkaGvGksatinsilgevkasidafglattsvreieGlvdG..vkirvidtpGlkssaldqsknekvlssvkklik 198
                 i ++G   vGks+ +n ++ge  a +   +  tt+ + i G+v+G   +i + dtpG+    +     e +++sv+  + 
  MMETSP1137-20121227|5242_1  85 ISIVGVPNVGKSTLMNCLVGERLAITTP-KAQTTR-HRILGIVNGedFQIVYSDTPGVVVPQY--KLHEGMMASVRGSLT 160
                 56789999************98876654.455555.579*****933456667****976544..345667777766554 PP

>> TIGR00073  hypB: hydrogenase accessory protein HypB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.9   0.0       8.5   1.7e+03      34      52 ..      86     104 ..      83     106 .. 0.80
   2 ?   10.3   0.0   0.00038     0.078     156     210 ..     191     255 ..     169     261 .. 0.75

  Alignments for each domain:
  == domain 1    score: -3.9 bits;  conditional E-value: 8.5
   TIGR00073  34 nllssiGsGktllleklie 52 
                  +++ +  Gk +l++ l+ 
  MMETSP1137-20121227|5242_1  86 SIVGVPNVGKSTLMNCLVG 104
                 6788999999999988775 PP

  == domain 2    score: 10.3 bits;  conditional E-value: 0.00038
   TIGR00073 156 keadlilinkvdlvea.......vdadv...ekvkadvkkinPeveiilvsaktgegldellefl 210
                 ++a l+++nkvdl+           +++   e++ +  ++  P++++i vsa+t+ g+d+l++ l
  MMETSP1137-20121227|5242_1 191 RSARLVIVNKVDLLREgsplsesRRIEIgseEQILDRWRQKFPSASVIPVSATTKVGVDDLFDRL 255
                 68999*******98532222211233333336889999**********************99876 PP

>> TIGR03263  guanyl_kin: guanylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00025     0.051       6      53 ..      87     134 ..      83     149 .. 0.90

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 0.00025
   TIGR03263   6 isgpsGvGKstlvkklleekeelklsvSattRkpRegEvdgkdYfFvs 53 
                 i+g   vGKstl++ l+ e+  +++  + ttR++  g v+g+d+  v 
  MMETSP1137-20121227|5242_1  87 IVGVPNVGKSTLMNCLVGERLAITTPKAQTTRHRILGIVNGEDFQIVY 134
                 567778*************************************98765 PP

>> TIGR02528  EutP: ethanolamine utilization protein, EutP
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   0.00058      0.12       3     122 ..      85     224 ..      83     256 .. 0.68

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 0.00058
   TIGR02528   3 imliGsvgcGkttLtqaLkgee..ikykktqa........veykdkai...DtPGeylenrryYsaLlv....taadadvivlvqsatdee...sllspgfasifak.eviglvtkidlaeadkeierakelLeeagaeki 122
                 i ++G  + Gk tL++ L ge   i   k q         v+ +d +i   DtPG  + + ++++ ++     +++dad + l  ++ +e    + +  ++ ++  +   + +v k+dl  + + ++   +++e + +e+i
  MMETSP1137-20121227|5242_1  85 ISIVGVPNVGKSTLMNCLVGERlaITTPKAQTtrhrilgiVNGEDFQIvysDTPGVVVPQYKLHEGMMAsvrgSLTDADAVLLTVDVFQEDfvdDAILRQIXALARRsARLVIVNKVDLLREGSPLSE-SRRIEIGSEEQI 224
                 56899999**********998622456677762222222233334233455****877766666655541111689***9999999888761113444555555556678999*****9987777776.566666666666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (384 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       196  (0.0477816); expected 82.0 (0.02)
Passed bias filter:                      170  (0.0414432); expected 82.0 (0.02)
Passed Vit filter:                        44  (0.0107265); expected 4.1 (0.001)
Passed Fwd filter:                        20  (0.00487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              20  [number of targets reported over threshold]
# CPU time: 0.57u 0.21s 00:00:00.77 Elapsed: 00:00:00.42
# Mc/sec: 1206.76
//
Query:       MMETSP1137-20121227|5243_1  [L=278]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0025   14.4   5.1     0.0037   13.8   3.6    1.2  1  TIGR02231 TIGR02231: conserved hypothetical protein


Domain annotation for each model (and alignments):
>> TIGR02231  TIGR02231: conserved hypothetical protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   3.6   8.9e-07    0.0037     105     194 ..      96     186 ..      79     192 .. 0.77

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 8.9e-07
   TIGR02231 105 edirekltepikdlkreeadlkelkklldfaeseieklleedreveakirelekklselenelralltekeqrskkv....lvtleatedaeae 194
                 ++++ ++t   k+ +++e d+++l++ ++ a++++++l +++r   a ++  ++k+ +++ e+++  ++ +q+++ +    l++lea ++++ e
  MMETSP1137-20121227|5243_1  96 QKTETQVT---KQQREKEGDINALFNYYNIANKNVAELCNHQRATPASHARFDEKIDKVKLEMKEAKKAGSQSKVDAlkkrLIKLEADKQQKEE 186
                 33333444...445669************************************************99977766655412225777777666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (278 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       238  (0.0580205); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.25u 0.12s 00:00:00.37 Elapsed: 00:00:00.37
# Mc/sec: 991.70
//
Query:       MMETSP1137-20121227|5244_1  [L=238]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (238 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        62  (0.0151146); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.14s 00:00:00.34 Elapsed: 00:00:00.35
# Mc/sec: 897.53
//
Query:       MMETSP1137-20121227|5245_1  [L=148]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (148 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       153  (0.0372989); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.16s 00:00:00.31 Elapsed: 00:00:00.27
# Mc/sec: 723.50
//
Query:       MMETSP1137-20121227|5246_1  [L=250]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.3e-31  107.7   0.1      2e-31  107.0   0.1    1.3  1  TIGR00120 ArgJ: glutamate N-acetyltransferase/amino-acid acetyltransferase


Domain annotation for each model (and alignments):
>> TIGR00120  ArgJ: glutamate N-acetyltransferase/amino-acid acetyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  107.0   0.1     5e-35     2e-31     244     405 .]      72     250 .]      58     250 .] 0.78

  Alignments for each domain:
  == domain 1    score: 107.0 bits;  conditional E-value: 5e-35
   TIGR00120 244 edskeaeklkeallavcqelakaiarDGeGatkllevqvkgakneedakviaraiagslLvktavfGaDpnWGRivaaiGys....gadvdkeevsvilsdekeevvlvdngep.lefe.ees..............eraeeilk..sdeieivvdlatGdeeataygCDLsydYvkinaeYtt 405
                  ++    ++++al++vc+ la  +ar+GeG+t ++ vqv+ga + + a+ + +a+++s L ktav G+Dpn GR+vaa+G      + d+  ++ +++l++      ++  g+  l++e e +              + a+ ++   +  +e+ +dl+ Gd+  t+ g DL+ +Yv ina+Y++
  MMETSP1137-20121227|5246_1  72 TQAAALAEFESALTSVCEGLAADVARNGEGTTHVIRVQVTGAPSVDLARGVGKAVVNSPLFKTAVAGNDPNVGRLVAAVGSYlgrvAPDLSLDKCTMSLGG----RPIFSAGSFdLDNEaE-AalsahmrdalisddNGASLLYPphQRCVEVAIDLGVGDKGVTVLGSDLTREYVDINADYRS 250
                 45566789***********************************************************************9766676666666667776666....2233333322333211.1122333333444446898898776788********************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (250 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        71  (0.0173086); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.24u 0.14s 00:00:00.38 Elapsed: 00:00:00.40
# Mc/sec: 824.93
//
Query:       MMETSP1137-20121227|5247_1  [L=503]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.6e-13   47.9   0.0    5.7e-13   47.2   0.0    1.3  1  TIGR01685 MDP-1: magnesium-dependent phosphatase-1
    2.8e-08   32.5   0.0    5.3e-08   31.6   0.0    1.4  1  TIGR01681 HAD-SF-IIIC: HAD phosphatase, family IIIC
  ------ inclusion threshold ------
      0.045   11.8   0.0        4.1    5.4   0.0    2.3  2  TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3


Domain annotation for each model (and alignments):
>> TIGR01685  MDP-1: magnesium-dependent phosphatase-1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.2   0.0   4.2e-16   5.7e-13       1     173 [.      33     199 ..      33     200 .. 0.85

  Alignments for each domain:
  == domain 1    score: 47.2 bits;  conditional E-value: 4.2e-16
   TIGR01685   1 lpkvivfDlDgTlWdhynisllkg.PfKpvksensiiidkeGaeltlikevrdvLqslkd....agvilaiasrndvpevareiLkifkikyaGkvvPlaelFdelvekekpsKakqleeilkklkkkspvelkpkeilfiDdrsv....nvrevekygvkvkyvesgedkksfkkileklk 173
                 lp vivfDlD+TlW+++ ++l +   +   ++ n     + G ++ l       L++l+       +++a asr++   +ar +L  ++++  G+      + +e+ +++k       +     +++k    ++++++lf+Dd  +    n   v + gv +  +++g +   +++ le++ 
  MMETSP1137-20121227|5247_1  33 LPAVIVFDLDNTLWTPELYTLRHLsGYQSASPPN----PRPGIDVWLLDGAHAALHELASckewECTVIAAASRTNRGGWARALLAEIEVD--GRSLDSLIMHKEIYTGDK-------KAHFSTIRAKT--GIDYDQMLFFDDAADgkygNCASVAGLGVLSAHCPDGLTNDVWRRALETYA 199
                 689*****************99987999999888....9*******************99888999*************************..766544444455555554.......34456788888..689*********87644447889************************9985 PP

>> TIGR01681  HAD-SF-IIIC: HAD phosphatase, family IIIC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.6   0.0   3.9e-11   5.3e-08       2     123 ..      36     163 ..      35     167 .. 0.73

  Alignments for each domain:
  == domain 1    score: 31.6 bits;  conditional E-value: 3.9e-11
   TIGR01681   2 vivfDlDnTLwtdeed.......vvkedpiedieltevt.ikeirdvLqelkkn....GvllalaSknddeevakellkikedYfdvilpkaelfldltigkrlpKskrlveilkklnsvlklksilfvDDlav 123
                 vivfDlDnTLwt+e +       +++ +p +   + +v   +    +L el+       +++a aS++++  +a++ll+  e+  d  ++  +l ++ ++++   K+ +   i  k    + ++++lf+DD a+
  MMETSP1137-20121227|5247_1  36 VIVFDLDNTLWTPELYtlrhlsgYQSASPPNPRPGIDVWlLDGAHAALHELASCkeweCTVIAAASRTNRGGWARALLAEIEV--D-GRSLDSLIMH-KEIYTGDKKAHFSTIRAKTG--IDYDQMLFFDDAAD 163
                 9*************99******955555555555555555445555555554444445889****************988674..2.2333444444.55557888888888877777..***********986 PP

>> TIGR01509  HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.0    0.0088        12       1      20 [.      36      55 ..      36      66 .. 0.78
   2 ?    5.4   0.0     0.003       4.1     120     140 ..     144     164 ..     129     167 .. 0.84

  Alignments for each domain:
  == domain 1    score: 3.9 bits;  conditional E-value: 0.0088
   TIGR01509  1 ailFDlDgvLvdtekglvpe 20
                +i+FDlD++L  +e+ ++ +
  MMETSP1137-20121227|5247_1 36 VIVFDLDNTLWTPELYTLRH 55
                69********9888776665 PP

  == domain 2    score: 5.4 bits;  conditional E-value: 0.003
   TIGR01509 120 alkklglkpeeclfvdDsaag 140
                   +k+g++ ++ lf+dD+a+g
  MMETSP1137-20121227|5247_1 144 IRAKTGIDYDQMLFFDDAADG 164
                 45899*************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (503 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       106  (0.0258411); expected 82.0 (0.02)
Passed bias filter:                       97  (0.023647); expected 82.0 (0.02)
Passed Vit filter:                        19  (0.00463189); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.35u 0.15s 00:00:00.50 Elapsed: 00:00:00.47
# Mc/sec: 1412.56
//
Query:       MMETSP1137-20121227|5248_1  [L=105]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (105 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        61  (0.0148708); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.14s 00:00:00.29 Elapsed: 00:00:00.50
# Mc/sec: 277.18
//
Query:       MMETSP1137-20121227|5249_1  [L=241]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (241 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       195  (0.0475378); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.15s 00:00:00.38 Elapsed: 00:00:00.63
# Mc/sec: 504.91
//
Query:       MMETSP1137-20121227|5250_1  [L=258]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (258 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        88  (0.0214529); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.16s 00:00:00.37 Elapsed: 00:00:00.46
# Mc/sec: 740.29
//
Query:       MMETSP1137-20121227|5251_1  [L=675]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   2.8e-123  409.9   0.0   3.7e-123  409.5   0.0    1.0  1  TIGR00458 aspS_arch: aspartate--tRNA ligase
      1e-58  197.1   0.0      2e-58  196.2   0.0    1.4  1  TIGR00457 asnS: asparagine--tRNA ligase
    4.8e-43  145.2   0.0    3.6e-28   96.1   0.0    2.1  2  TIGR00459 aspS_bact: aspartate--tRNA ligase
    4.5e-27   92.7   0.0      3e-26   89.9   0.0    2.2  1  TIGR00499 lysS_bact: lysine--tRNA ligase
    2.5e-14   51.3   0.0    4.4e-14   50.5   0.0    1.3  1  TIGR00462 genX: EF-P lysine aminoacylase GenX
    2.9e-06   24.6   0.0     0.0032   14.7   0.0    2.9  2  TIGR02367 PylS_Cterm: pyrrolysine--tRNA ligase, C-terminal region
     0.0016   15.6   0.3       0.38    7.8   0.1    2.3  2  TIGR00468 pheS: phenylalanine--tRNA ligase, alpha subunit
     0.0076   13.1   0.0      0.031   11.0   0.0    1.9  2  TIGR00442 hisS: histidine--tRNA ligase


Domain annotation for each model (and alignments):
>> TIGR00458  aspS_arch: aspartate--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  409.5   0.0  7.2e-126  3.7e-123      12     421 ..     191     630 ..     187     637 .. 0.93

  Alignments for each domain:
  == domain 1    score: 409.5 bits;  conditional E-value: 7.2e-126
   TIGR00458  12 gkevllrgwvheirdlGa.lifvllrdre.gliqilvkkkk....vskelfklikklkkesvvavkGkvk...ekekapqgleiipeklevlneakeplPldlee..kveaeld.........trldarfldlrrpkvqaifkirsevlesvreflaeegfievntPklvasateGGtelfeityfereaflaqsPqlykqvllaaglervyeiaPifraeehntkrhlnevisidiemafedh.kdvldileelvvrvfedvaeklkkelevlevklevpeekle....rltydeaieilrakGkeikdgedlsteaekllG....ekmdglyfitd.fPteikPfytmPdednPeisksfdllyrdleissGaqrihdydllvekikakGlePeslksyleafkyGmPPhaGwGlGaerlvmvlldlknireavlfPr 421
                 g evl+rg++ + r   a  +f++lr  +  ++q +  k+k     sk ++k  ++l +esv+ v+G+++     + + +++ei+++++  ++ ak  lP++++   ++ea +d             ar +dlr p ++ai+ ++s+ + ++re la +gfie++tPklva  +eGG+ +f   yf   a laqsPqlykq+ +aa+++rv+ei+P+frae++nt+rhl e++++d+emaf++h  +v+ +l+ +++ +f+ ++ +++ el    ++++    +l+     + ++ea+++lr +G+ ++  +dlst  e+llG    +k++++ + +d fPt+++PfytmP  dn ++s+s+d++ r++ei sGaqrihd  +l + ika+Gl  e l+ y+++++yGmPPh G G+G+erlv  +l+l+n+r+a++f  
  MMETSP1137-20121227|5251_1 191 GSEVLIRGRMANSRMPSAnSAFLVLRSAAlYTVQAVFFKDKetpkQSKAMLKELQQLTTESVIEVRGELReaeVLSCSQNNVEIYIKSVTLISAAKPRLPFEIDAagRSEAVIDaseltxpsvPASRARWIDLRAPANNAIMVVQSQTCALFREALASQGFIELHTPKLVAGESEGGAGVFRTDYFGSPACLAQSPQLYKQMAIAADMDRVFEIGPVFRAENSNTRRHLCEFTGLDMEMAFNHHyMEVIRVLHVMFTSLFDGLESRCTLELAAVRTQYPSAAPRLTaepcVVHWEEAMDMLRDAGESVSGLDDLSTPHERLLGklvaDKYQTDLYFLDrFPTAVRPFYTMPCPDNADYSNSYDIFLRGEEICSGAQRIHDARMLSDAIKARGLPLEPLSAYIDSMRYGMPPHGGAGIGLERLVFLYLNLDNVRKASMFRE 630
                 689***********998879******9883589999877766554599**********************4333456889********************8876666********99*9998856679********************************************************************************************************************99***********************9999999998765555422225899*****************************9999*****9999999************99************************************************************************************965 PP

>> TIGR00457  asnS: asparagine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  196.2   0.0   3.8e-61     2e-58      13     452 ..     188     634 ..     178     637 .. 0.82

  Alignments for each domain:
  == domain 1    score: 196.2 bits;  conditional E-value: 3.8e-61
   TIGR00457  13 kavdeevkvsgWvktkR.sskkiaFlelrDGsslkalqavikke.....leeeleqelkklttgssvsvsgkvvespk...kkqelElkvkkievvgeae.eedyplqkkehslefl............relahLrlRtktlsAvlkvRsalskaiheyfqkegfvkvstPiltssdcEGagelFkvktegvdfskdffgkeayLtvsgqlelEa.lalalskvytlgptFRAEksntkRHlsEfwmiEpElaFvn.ledllqlieelikyiikavleeakqelkfleknvekkkikkleeiisskfaritYtdAieiLkesdakkkfeledlwG.vdlktehErfl....aeeyfksPvfvtdyPkeikaFYmkqn.ddektvaavDllvPkiGEiiGGseReddldkLeerlkeegldteelkWyldlRkyGsvphsGfGlGleRlvayltglenirdaipfpRtaes 452
                  a+++ev ++g +++ R  s++ aFl lr  + l ++qav  k+     + +++ +el++ltt+s + v g++ e +    +++++E+ +k++ +++ a+    + + ++ +s   +               + + lR+ + +A++ v s+    ++e    +gf++++tP l++ ++EG++ +F+++         +fg +a L++s ql+  + +a+ +++v+ +gp FRAE+snt+RHl Ef+ ++ E+aF +   + +++   +   ++  +   ++ el  + ++        +   ++++  ++++++A+++L+++        e + G +dl+t hEr l    a++y+ +  f+ ++P+ +++FY   + d+ +  ++ D+++ +  Ei+ G++R++d   L++ +k++gl  e l+ y+d  +yG  ph+G G+GleRlv    +l n+r a+ f  t++ 
  MMETSP1137-20121227|5251_1 188 PAIGSEVLIRGRMANSRmPSANSAFLVLRSAA-LYTVQAVFFKDketpkQSKAMLKELQQLTTESVIEVRGELREAEVlscSQNNVEIYIKSVTLISAAKpRLPFEIDAAGRSEAVIdaseltxpsvpaSRARWIDLRAPANNAIMVVQSQTCALFREALASQGFIELHTPKLVAGESEGGAGVFRTD---------YFGSPACLAQSPQLYKQMaIAADMDRVFEIGPVFRAENSNTRRHLCEFTGLDMEMAFNHhYMEVIRVLHVMFTSLFDGLESRCTLELAAVRTQYP-----SAAPRLTAEPCVVHWEEAMDMLRDA-------GESVSGlDDLSTPHERLLgklvADKYQTDLYFLDRFPTAVRPFYTMPCpDNADYSNSYDIFLRG-EEICSGAQRIHDARMLSDAIKARGLPLEPLSAYIDSMRYGMPPHGGAGIGLERLVFLYLNLDNVRKASMFRETQTD 634
                 57899************7799********988.*******97762212123455678999*************997752225699**************94345666555544433311111111111123456789999*********************************************988.........**************998615677**********************************87577777777777777777666666666666655544.....44445778999*************9.......344444279******9764444899999999*************999989999*******9975.69********************************************************************988765 PP

>> TIGR00459  aspS_bact: aspartate--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.1   0.0   7.1e-31   3.6e-28      14     268 ..     189     462 ..     179     490 .. 0.78
   2 !   46.9   0.0   5.3e-16   2.7e-13     470     569 ..     548     645 ..     539     654 .. 0.88

  Alignments for each domain:
  == domain 1    score: 96.1 bits;  conditional E-value: 7.1e-31
   TIGR00459  14 slgkkvtlaGWverrkd.lGeliFidlrDkeg.ivqvvsdkk.......kealelakelrnedvvqvkgkvslreeesknrnldtgeievlaeeitvlnksk.kkPleie...kkeaeee.........vrlkyRYLdLRrpkmqqrlklRskvtkavRnflddkgFleietPiLtkatPeGardyLvPsRvk.kgefyaLpqsPqlfkqLLmvsGvdkYyqiarcfRDeDlRaDRq.PeftqiDlemsFlnq.edvmelveklvsevfkevkk.idlkkk 268
                 ++g +v + G + + +    +  F++lr     +vq v+ k+       k+ l+ +++l++e v++v+g++  re+ ++ +  + +++e++ +++t+++++k ++P+ei+   ++ea  +            + R++dLR p+ + ++   s+     R+ l+ +gF+e+ tP L     eG        R+   g+   L qsPql+kq+ +++ +d+ + i  +fR e++   R   eft +D+em+F ++  +v+ ++  +++++f  +    +l+  
  MMETSP1137-20121227|5251_1 189 AIGSEVLIRGRMANSRMpSANSAFLVLRSAALyTVQAVFFKDketpkqsKAMLKELQQLTTESVIEVRGEL--REA-EVLS-CSQNNVEIYIKSVTLISAAKpRLPFEIDaagRSEAVIDaseltxpsvPASRARWIDLRAPANNAIMVVQSQTCALFREALASQGFIELHTPKLVAGESEGGAGVF---RTDyFGSPACLAQSPQLYKQMAIAADMDRVFEIGPVFRAENSNTRRHlCEFTGLDMEMAFNHHyMEVIRVLHVMFTSLFDGLESrCTLELA 462
                 68889999998886665145589999999887799976644325553323445678899************..443.3444.68899***********9766378**999655333322256666666335689***********************************************987654...44324555689*******************************9999758***********876257999999***9999877544555544 PP

  == domain 2    score: 46.9 bits;  conditional E-value: 5.3e-16
   TIGR00459 470 laeayDlvlnGvelGgGsiRihdkelqekvfeilgideeearekFgflleafeyGaPphaGlalGlDRlvmllaetdsiRdviaFPktakaa..ellteaPs 569
                  ++ yD+ l G e+ +G+ Rihd ++ +  ++  g+  e      +  ++ + yG Pph+G ++Gl+Rlv l  + d++R    F  t++ a  e  teaP 
  MMETSP1137-20121227|5251_1 548 YSNSYDIFLRGEEICSGAQRIHDARMLSDAIKARGLPLE----PLSAYIDSMRYGMPPHGGAGIGLERLVFLYLNLDNVRKASMFRETQTDArpEAQTEAPR 645
                 5899**********************9999998888776....577889************************************99988763357788875 PP

>> TIGR00499  lysS_bact: lysine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.9   0.0   5.9e-29     3e-26      53     489 ..     191     628 ..     167     634 .. 0.79

  Alignments for each domain:
  == domain 1    score: 89.9 bits;  conditional E-value: 5.9e-29
   TIGR00499  53 elevsiaGRikakR.smgkatFitlqdes.gklqlyvnkd.klsedveeleekl..ldlGDiigvkGkl.....kktktgelsvkveelklltkalrplPekfhG.......lkdqEt......ryrkRylDlivnkesrqtflkRskiikaiRkfldergflEvEtPilqsisgGAsAkPFithhnaldvdlylRiApElyLKrLivgGlekvyEigrvFRnEGvdt.tHnpEFttiElYqay.adyedllelteellktlvkellgtlkikykeeeldlkkpvkkitmleaikkidketgislddlkdsetakalakklaievaekslslgkilnklfeefvEetliqPtfiteyPaeisPL.AkrddenpelteRFElFikgkEianaysElndpldqrerfeeqvaekeagddeasllDedfvealeyGlpptgGlGiGiDRlvmlltdsksirdvllF 489
                   ev i GR+   R      +F+ l+     ++q +  kd +++++++ + ++l  l +  +i+v+G l         ++ + +++++++l++ a   lP +          +  +E         r R++Dl +  +++  +++ s+  ++ R+ l ++gf+E+ tP l +      A  F t +     +  l   p ly +  i + +++v+Eig vFR E  +t +H  EFt +++ +a+ + y +++ +   ++++l   l+  ++++++  + ++     ++t    + + +++++     l+d+ +           + + s+ ++++l kl+ ++    l    f+  +P+++ P      ++n +  + +++F++g Ei+ + + + d+      +++  a+k+ g  + +l    ++++++yG+pp gG GiG++Rlv l+ + +++r   +F
  MMETSP1137-20121227|5251_1 191 GSEVLIRGRMANSRmPSANSAFLVLRSAAlYTVQAVFFKDkETPKQSKAMLKELqqLTTESVIEVRGELreaevLSCSQNNVEIYIKSVTLISAAKPRLPFEIDAagrseavIDASELtxpsvpASRARWIDLRAP-ANNAIMVVQSQTCALFREALASQGFIELHTPKLVAGESEGGAGVFRTDY--FGSPACLAQSPQLYKQMAIAADMDRVFEIGPVFRAENSNTrRHLCEFTGLDMEMAFnHHYMEVIRVLHVMFTSLFDGLESRCTLELAAVRTQYPSAAPRLTAEPCVVHWEEAMD----MLRDAGES-------VSGLDDLSTPHERLLGKLVADKYQTDL---YFLDRFPTAVRPFyTMPCPDNADYSNSYDIFLRGEEICSGAQRIHDARM----LSD--AIKARGLPLEPL--SAYIDSMRYGMPPHGGAGIGLERLVFLYLNLDNVRKASMF 628
                 57899*********6677899****998866888666555055776666666554578889*******977776677889999*************99**8764311222212223332222223599*****987.88999**************************9998877777899****9..8999**********999999****************988736************9736799*********************************99999998777773333332....33333222.......233335556678999999888666555...6***********8345689*********************999988754....333..345555444444..47999***************************99988777 PP

>> TIGR00462  genX: EF-P lysine aminoacylase GenX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.5   0.0   8.5e-17   4.4e-14       6     301 ..     337     625 ..     333     628 .. 0.82

  Alignments for each domain:
  == domain 1    score: 50.5 bits;  conditional E-value: 8.5e-17
   TIGR00462   6 kllaaiRafFaergvlEvetpllseapvtdvhlealktelleeekekeklyLqtSPEyamKrLLaagsgkifqlakvfRneer.grlHnpEFtmLEwY.rvgadleelmeeveellqevle......deeaeverlsyaeaferylgidpltasleelkeaaekageaaseeedredlldlllvekvepklgkerptflydyPas.qaaLarikkddervAeRfElYikglElaNgfeELtdaaeqrkRfeednaerkalgleevpldekllaaleaglpecsGvAlGlDRLlmlalgaesieev 301
                 + +a  R+ +a++g++E  tp l++ + ++    +++t++       ++  L  SP ++    +aa   ++f+++ vfR e++  r+H  EFt L+     + ++ e+++ ++ +++++++      + e ++ r++y +a  r+   +p  ++ ee  +++++age +s  +d ++  ++ll + v  k +++ ++fl ++P++ +       +d++ +++ ++++++g E++ g + + da     R+ +d    ka+gl+  pl ++++++++ g+p+  G  +Gl+RL+ l l+ +++++ 
  MMETSP1137-20121227|5251_1 337 QTCALFREALASQGFIELHTPKLVA-GESEGGAGVFRTDYF-----GSPACLAQSPQLYKQMAIAADMDRVFEIGPVFRAENSnTRRHLCEFTGLDMEmAFNHHYMEVIRVLHVMFTSLFDglesrcTLELAAVRTQYPSAAPRL-TAEPCVVHWEEAMDMLRDAGESVSGLDDLSTPHERLLGKLVADKYQTD-LYFLDRFPTAvRPFYTMPCPDNADYSNSYDIFLRGEEICSGAQRIHDA-----RMLSDA--IKARGLPLEPL-SAYIDSMRYGMPPHGGAGIGLERLVFLYLNLDNVRKA 625
                 56677899999**********9986.577888899999964.....45999********9999****************9987689*********97413455666777777777777777886665555556666666665554.45666779999999******************************9866.9*******8725666778899999*****************9998887.....555554..45667777777.5799**************************9999875 PP

>> TIGR02367  PylS_Cterm: pyrrolysine--tRNA ligase, C-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0   6.2e-06    0.0032      88     132 ..     386     427 ..     327     442 .. 0.73
   2 !    5.9   0.0     0.003       1.5     204     229 ..     601     626 ..     589     633 .. 0.87

  Alignments for each domain:
  == domain 1    score: 14.7 bits;  conditional E-value: 6.2e-06
   TIGR02367  88 pnlynllrkldrllekpirifeiGscyrke.sdGsehleeftmlnl 132
                 p ly+ +     +  +  r+feiG+ +r e s+  +hl eft l++
  MMETSP1137-20121227|5251_1 386 PQLYKQM----AIAADMDRVFEIGPVFRAEnSNTRRHLCEFTGLDM 427
                 5555433....35566779*********87578999******9876 PP

  == domain 2    score: 5.9 bits;  conditional E-value: 0.003
   TIGR02367 204 pwvGlGfGlerllkvredtknvrsaa 229
                 p  G+G Glerl+ +  + +nvr+a+
  MMETSP1137-20121227|5251_1 601 PHGGAGIGLERLVFLYLNLDNVRKAS 626
                 788********************987 PP

>> TIGR00468  pheS: phenylalanine--tRNA ligase, alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.8   0.1   0.00074      0.38     180     237 ..     398     455 ..     381     461 .. 0.78
   2 !    5.5   0.0    0.0035       1.8     290     310 ..     604     624 ..     596     630 .. 0.90

  Alignments for each domain:
  == domain 1    score: 7.8 bits;  conditional E-value: 0.00074
   TIGR00468 180 pirifsigrvfRrdav.datHlpeFhQveglvvdknvslknLkglleeflkklfgetev 237
                   r+f ig vfR ++  + +Hl eF+ +++  +  n +  + + +l+ ++++lf  +e 
  MMETSP1137-20121227|5251_1 398 MDRVFEIGPVFRAENSnTRRHLCEFTGLDM-EMAFNHHYMEVIRVLHVMFTSLFDGLES 455
                 469*********99861568******9995.5556777889999******999987655 PP

  == domain 2    score: 5.5 bits;  conditional E-value: 0.0035
   TIGR00468 290 afGlgieRlamlkygikdiRd 310
                 ++G+g+eRl++l ++++++R+
  MMETSP1137-20121227|5251_1 604 GAGIGLERLVFLYLNLDNVRK 624
                 68******************6 PP

>> TIGR00442  hisS: histidine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.0   0.0   6.1e-05     0.031      98     162 ..     399     464 ..     388     493 .. 0.79
   2 ?   -2.1   0.0      0.58     3e+02     300     319 ..     604     623 ..     600     639 .. 0.77

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 6.1e-05
   TIGR00442  98 fklyyigpvFRyErpqkGR.yRqFhQldvevvGsespladaeiialaaelleel..glke.vtleinsl 162
                  ++++igpvFR+E+    R +++F+ ld+e+  +++    +e+i +++ ++++l  gl++ +tle+  +
  MMETSP1137-20121227|5251_1 399 DRVFEIGPVFRAENSNTRRhLCEFTGLDMEMAFNHH---YMEVIRVLHVMFTSLfdGLESrCTLELAAV 464
                 699*************99966*********976655...567777777777766666655588877665 PP

  == domain 2    score: -2.1 bits;  conditional E-value: 0.58
   TIGR00442 300 GfaiGieRllllleeeglle 319
                 G +iG+eRl+ l  ++++ +
  MMETSP1137-20121227|5251_1 604 GAGIGLERLVFLYLNLDNVR 623
                 999******98876655544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (675 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       137  (0.0333983); expected 82.0 (0.02)
Passed bias filter:                      125  (0.0304729); expected 82.0 (0.02)
Passed Vit filter:                        18  (0.0043881); expected 4.1 (0.001)
Passed Fwd filter:                         8  (0.00195027); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.62u 0.17s 00:00:00.79 Elapsed: 00:00:00.62
# Mc/sec: 1436.98
//
Query:       MMETSP1137-20121227|5252_1  [L=194]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (194 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        69  (0.0168211); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.16s 00:00:00.35 Elapsed: 00:00:00.30
# Mc/sec: 853.53
//
Query:       MMETSP1137-20121227|5253_1  [L=233]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (233 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       124  (0.0302292); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.17s 00:00:00.40 Elapsed: 00:00:00.33
# Mc/sec: 931.92
//
Query:       MMETSP1137-20121227|5254_1  [L=290]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (290 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        71  (0.0173086); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.13s 00:00:00.35 Elapsed: 00:00:00.36
# Mc/sec: 1063.25
//
Query:       MMETSP1137-20121227|5255_1  [L=244]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (244 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       104  (0.0253535); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.15s 00:00:00.36 Elapsed: 00:00:00.52
# Mc/sec: 619.33
//
Query:       MMETSP1137-20121227|5255_2  [L=243]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (243 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        46  (0.011214); expected 82.0 (0.02)
Passed bias filter:                       39  (0.00950756); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.14s 00:00:00.33 Elapsed: 00:00:00.54
# Mc/sec: 593.95
//
Query:       MMETSP1137-20121227|5256_1  [L=296]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (296 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        67  (0.0163335); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.14s 00:00:00.37 Elapsed: 00:00:00.39
# Mc/sec: 1001.76
//
Query:       MMETSP1137-20121227|5257_1  [L=78]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (78 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        30  (0.00731351); expected 82.0 (0.02)
Passed bias filter:                       29  (0.00706972); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.18s 00:00:00.30 Elapsed: 00:00:00.28
# Mc/sec: 367.68
//
Query:       MMETSP1137-20121227|5258_1  [L=174]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00033   17.4   0.1    0.00044   17.0   0.1    1.1  1  TIGR00120 ArgJ: glutamate N-acetyltransferase/amino-acid acetyltransferase


Domain annotation for each model (and alignments):
>> TIGR00120  ArgJ: glutamate N-acetyltransferase/amino-acid acetyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.1   1.1e-07   0.00044     185     271 ..      14     100 ..      10     117 .. 0.90

  Alignments for each domain:
  == domain 1    score: 17.0 bits;  conditional E-value: 1.1e-07
   TIGR00120 185 atlLgFittdveieskalqkmLrkatdksFnqitvDGdtstnDtvlvlangasetkaitedskeaeklkeallavcqelakaiarDG 271
                 a + +++ + ++ ++k+  ++Lrk    s+n+    Gd+ t +  ++la   ++++++t  +  ++++ +   +vc  la a+ ++ 
  MMETSP1137-20121227|5258_1  14 ASIWSWVCCRAADSKKEALDLLRKCNGTSYNHGGAGGDKVTAEIAIALAGELNRNETLTALHFVEHDFGDSADEVCVALATAMEQNK 100
                 778899**************************************************************************9997765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (174 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        99  (0.0241346); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.18u 0.12s 00:00:00.30 Elapsed: 00:00:00.30
# Mc/sec: 765.54
//
Query:       MMETSP1137-20121227|5259_1  [L=69]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (69 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        87  (0.0212092); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.26
# Mc/sec: 350.28
//
Query:       MMETSP1137-20121227|5260_1  [L=578]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (578 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       176  (0.0429059); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.14s 00:00:00.51 Elapsed: 00:00:00.98
# Mc/sec: 778.47
//
Query:       MMETSP1137-20121227|5261_1  [L=221]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (221 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        74  (0.01804); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.12s 00:00:00.34 Elapsed: 00:00:00.69
# Mc/sec: 422.75
//
Query:       MMETSP1137-20121227|5263_1  [L=356]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        5.1    5.3   9.7         11    4.2   0.2    2.6  2  TIGR03685 L21P_arch: 50S ribosomal protein L12P


Domain annotation for each model (and alignments):
>> TIGR03685  L21P_arch: 50S ribosomal protein L12P
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.2    0.0027        11      53      95 ..      91     137 ..      62     158 .. 0.63
   2 ?    4.0   2.6    0.0032        13      61      98 ..     199     236 ..     192     240 .. 0.59

  Alignments for each domain:
  == domain 1    score: 4.2 bits;  conditional E-value: 0.0027
   TIGR03685  53 aiekaaaapvaaaaaaaaaaeaaeeekeeee....eeeeekeeeeee 95 
                 + + aa++p+  a+a ++++e +++++ +e+    +    + ++eee
  MMETSP1137-20121227|5263_1  91 MFRPAAIPPAGFATAGTTSTEGQAQSAPTEQgdlpDTSAADTQNEEE 137
                 34556666666666655555555555555444565333333333333 PP

  == domain 2    score: 4.0 bits;  conditional E-value: 0.0032
   TIGR03685  61 pvaaaaaaaaaaeaaeeekeeeeeeeeekeeeeeeale 98 
                  + a+++ +a+++a+  ++ +e+eeee + +++e+al+
  MMETSP1137-20121227|5263_1 199 RANASSGGSASKRAKTGRASAEDEEEELNSDDDEDALN 236
                 34455555555555555566666777777777777655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (356 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        81  (0.0197465); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.27u 0.16s 00:00:00.43 Elapsed: 00:00:00.62
# Mc/sec: 757.87
//
Query:       MMETSP1137-20121227|5264_1  [L=439]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (439 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       121  (0.0294978); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.16s 00:00:00.48 Elapsed: 00:00:00.51
# Mc/sec: 1136.14
//
Query:       MMETSP1137-20121227|5266_1  [L=177]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      8e-31  103.9   0.5    2.3e-30  102.5   0.3    1.7  2  TIGR03630 arch_S17P: archaeal ribosomal protein S17P
    5.4e-08   30.7   0.1    9.4e-08   29.9   0.1    1.4  1  TIGR03635 S17_bact: 30S ribosomal protein S17


Domain annotation for each model (and alignments):
>> TIGR03630  arch_S17P: archaeal ribosomal protein S17P
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0      0.21   4.3e+02       6      28 ..      24      46 ..      19      51 .. 0.73
   2 !  102.5   0.3   1.1e-33   2.3e-30       2     101 ..      60     163 ..      59     164 .. 0.90

  Alignments for each domain:
  == domain 1    score: -1.1 bits;  conditional E-value: 0.21
   TIGR03630  6 kaPekeCddekCPfhGelkvrgq 28
                ++ ++  + ++C f G+ +v g+
  MMETSP1137-20121227|5266_1 24 EQNQRAFQKQDCIFVGKKRVLGK 46
                55566677788888888888765 PP

  == domain 2    score: 102.5 bits;  conditional E-value: 1.1e-33
   TIGR03630   2 gievkaPekeCd....dekCPfhGelkvrgqvlegkvvkkkmektvvvereylkyvkkyeryekrrskihahlPeCievkeGdkvliaetrplsktisfvvlek 101
                 g+ +k+P++  +    d+kCP+ G++++rg++++g +  +km++tv+++++yl+y+kky+r+ekr+++  +h+ +C++v++Gd +l +++rplskt++f +l++
  MMETSP1137-20121227|5266_1  60 GLGIKTPRAAIEgsyvDKKCPWTGSVNIRGKLITGIIKTAKMKNTVIIRKDYLHYIKKYNRFEKRHKNTPVHVSPCFRVRPGDSILAGQCRPLSKTVRFNMLKV 163
                 55666666554433449**********************************************************************************99875 PP

>> TIGR03635  S17_bact: 30S ribosomal protein S17
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.9   0.1   4.6e-11   9.4e-08       2      71 ..      90     160 ..      89     161 .. 0.93

  Alignments for each domain:
  == domain 1    score: 29.9 bits;  conditional E-value: 4.6e-11
   TIGR03635   2 ktlvGvVvsdkmdktvvVkverkvkhplYkKivkrtkkykaHDe.eneakvGDvVeieetrPlSktKrwrl 71 
                 k ++G++  +km++tv+++ +     ++Y+++ kr+k+  +H     +++ GD +   ++rPlSkt r+++
  MMETSP1137-20121227|5266_1  90 KLITGIIKTAKMKNTVIIRKDYLHYIKKYNRFEKRHKNTPVHVSpCFRVRPGDSILAGQCRPLSKTVRFNM 160
                 6789**************************************873678******************99976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (177 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       134  (0.032667); expected 82.0 (0.02)
Passed bias filter:                      109  (0.0265724); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.18u 0.17s 00:00:00.35 Elapsed: 00:00:00.42
# Mc/sec: 556.24
//
Query:       MMETSP1137-20121227|5267_1  [L=963]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.9e-06   24.4   0.4    8.7e-06   22.8   0.2    1.8  2  TIGR02651 RNase_Z: ribonuclease Z
     0.0017   15.6   0.1     0.0035   14.6   0.1    1.4  1  TIGR03413 GSH_gloB: hydroxyacylglutathione hydrolase


Domain annotation for each model (and alignments):
>> TIGR02651  RNase_Z: ribonuclease Z
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.8   0.2   4.2e-09   8.7e-06      27     149 ..     441     559 ..     425     572 .. 0.84
   2 ?   -2.2   0.0      0.18   3.6e+02     220     230 ..     600     610 ..     558     658 .. 0.65

  Alignments for each domain:
  == domain 1    score: 22.8 bits;  conditional E-value: 4.2e-09
   TIGR02651  27 geliLfDcGEgtQrqllkskisfkkidkIfitHlHgDHilGLpGLlstlslqerkepLtiygPkgik.efiekllevsktklnyeikvkeieekke.evleeekfkvealeldHsveslgYrlee 149
                  e iL+D+     + l+ ++is +ki+++++tH+H+DH  G    ++++ l++r   +t++ +k i   fi+k   vs +  ++ +++  +++ k  e +++++ +++ +   H  +++g+r e 
  MMETSP1137-20121227|5267_1 441 AEXILVDPPAHSAQYLRLNGISSRKITHVILTHCHADHDAG---TFQKILLEQR---VTVMTTKTIMaAFIRKYSLVSSMPEEFLLRLFVFHSVKIaEPVHFQGGTLKFFYSLHALPCIGFRAEL 559
                 5667777777777789999*******************986...5788888887...8999999998799***99999999***999998887766766789999****************9765 PP

  == domain 2    score: -2.2 bits;  conditional E-value: 0.18
   TIGR02651 220 aknadlLihea 230
                 ++++dlL+hea
  MMETSP1137-20121227|5267_1 600 VQESDLLLHEA 610
                 44455555554 PP

>> TIGR03413  GSH_gloB: hydroxyacylglutathione hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.1   1.7e-06    0.0035      21      75 ..     442     498 ..     437     513 .. 0.77

  Alignments for each domain:
  == domain 1    score: 14.6 bits;  conditional E-value: 1.7e-06
   TIGR03413  21 eavvvDpge.aepvlealeekglkleaillTHhHaDHvggv.aellekfpvkvvgpa 75 
                 e ++vDp+  ++  l+    ++ k+++++lTH HaDH  g+ +++l + +v+v+ ++
  MMETSP1137-20121227|5267_1 442 EXILVDPPAhSAQYLRLNGISSRKITHVILTHCHADHDAGTfQKILLEQRVTVMTTK 498
                 568899865156677777778899*************77653788888888888766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (963 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       136  (0.0331546); expected 82.0 (0.02)
Passed bias filter:                      101  (0.0246221); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.61u 0.15s 00:00:00.76 Elapsed: 00:00:00.77
# Mc/sec: 1650.72
//
Query:       MMETSP1137-20121227|5268_1  [L=302]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (302 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        96  (0.0234032); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.15s 00:00:00.39 Elapsed: 00:00:00.80
# Mc/sec: 498.26
//
Query:       MMETSP1137-20121227|5269_1  [L=90]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (90 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        57  (0.0138957); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.14s 00:00:00.27 Elapsed: 00:00:00.27
# Mc/sec: 439.96
//
Query:       MMETSP1137-20121227|5270_1  [L=490]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.8e-09   32.5   0.0    3.4e-07   27.4   0.0    2.0  2  TIGR01426 MGT: glycosyltransferase, MGT family


Domain annotation for each model (and alignments):
>> TIGR01426  MGT: glycosyltransferase, MGT family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    3.0   0.0    0.0021       8.8       2      85 ..      25     108 ..      24     157 .. 0.70
   2 !   27.4   0.0   8.2e-11   3.4e-07     285     392 ..     360     467 ..     356     468 .. 0.91

  Alignments for each domain:
  == domain 1    score: 3.0 bits;  conditional E-value: 0.0021
   TIGR01426   2 nipayGHvnPtLgvveeLvkrGhrVtYaiteefaekveaagAeavlYesaleeedlkeenateeelldileklldealsvlpql 85 
                  +++ G   P L++v +L + G +V    + + ++++e+ g e+   + ++e   ++++++ ++     +e++l+ a ++l  +
  MMETSP1137-20121227|5270_1  25 ALGTRGDFQPYLALVLQLQQAGYHVRMYSFCNHRPQAEQYGVEFFPIDYDIEDLLANSKLMRQAMSGGDVEQFLNAANEALAVV 108
                 677889999*****************99999************98777777764444445556666666666666666666555 PP

  == domain 2    score: 27.4 bits;  conditional E-value: 8.2e-11
   TIGR01426 285 pqlevLekadllvtHgGmnstmealaagvPlvavPqgadqeltarriaeLglgrvlek.eevTaekLreavlavlsddevaerlkkirkeireaGGarrAAdeieklla 392
                 p+  +  + +l v HgG +++  al  g P ++ P   dq +  r +a+ g+g+  ++  ++T++ L +a+++  s +e+a + ++i k +r + Ga+     iek+l 
  MMETSP1137-20121227|5270_1 360 PHEWLFPRCKLTVHHGGSGTSHCALRSGRPTIITPAFLDQFTYRRLVANSGAGVAAPPlSKLTVKDLVRAIKRA-STPEMAIAAAQISKLVRSENGANETLRQIEKFLT 467
                 5666678899********************************************9976489********99996.5688999999********************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (490 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        98  (0.0238908); expected 82.0 (0.02)
Passed bias filter:                       97  (0.023647); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.17s 00:00:00.53 Elapsed: 00:00:00.35
# Mc/sec: 1847.85
//
Query:       MMETSP1137-20121227|5271_1  [L=268]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (268 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       403  (0.0982448); expected 82.0 (0.02)
Passed bias filter:                      202  (0.0492443); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.17s 00:00:00.43 Elapsed: 00:00:00.36
# Mc/sec: 982.59
//
Query:       MMETSP1137-20121227|5272_1  [L=352]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (352 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        54  (0.0131643); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.16s 00:00:00.42 Elapsed: 00:00:00.36
# Mc/sec: 1290.56
//
Query:       MMETSP1137-20121227|5273_1  [L=324]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (324 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        71  (0.0173086); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.19s 00:00:00.44 Elapsed: 00:00:00.28
# Mc/sec: 1474.64
//
Query:       MMETSP1137-20121227|5274_1  [L=247]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (247 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        79  (0.0192589); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.16s 00:00:00.39 Elapsed: 00:00:00.41
# Mc/sec: 795.15
//
Query:       MMETSP1137-20121227|5276_1  [L=262]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.1e-15   55.7   5.3    1.7e-15   55.0   3.7    1.3  1  TIGR02287 PaaY: phenylacetic acid degradation protein PaaY
    5.8e-10   36.0   8.6    3.6e-09   33.3   6.0    1.8  1  TIGR02353 NRPS_term_dom: non-ribosomal peptide synthetase terminal domain of unknown function
    2.8e-08   31.5  14.3    7.5e-07   26.8   9.6    2.8  2  TIGR03570 NeuD_NnaD: sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family
    0.00011   19.0   0.1    0.00018   18.3   0.1    1.4  1  TIGR01173 glmU: UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase
    0.00013   19.5  12.1      0.012   13.1   1.0    2.1  2  TIGR03532 DapD_Ac: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase
    0.00037   17.3   6.9     0.0022   14.8   3.6    2.2  3  TIGR01853 lipid_A_lpxD: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
    0.00057   17.1   3.0    0.00057   17.1   2.1    1.4  1  TIGR03991 alt_bact_glmU: UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase
     0.0024   14.8   0.5     0.0034   14.3   0.3    1.1  1  TIGR02091 glgC: glucose-1-phosphate adenylyltransferase
     0.0024   14.6   5.0     0.0061   13.3   3.1    1.7  1  TIGR03992 Arch_glmU: UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase
     0.0037   14.4   0.9        0.1    9.7   0.0    2.5  2  TIGR01852 lipid_A_lpxA: acyl-[acyl-carrier-protein]-UDP-N-acetylglucosamine O-acyltransferase
      0.009   13.7   9.1      0.032   11.9   1.1    2.2  2  TIGR03308 phn_thr-fam: phosphonate metabolim protein, transferase hexapeptide repeat family
  ------ inclusion threshold ------
      0.044   11.7   9.4      0.066   11.1   2.3    2.6  3  TIGR01172 cysE: serine O-acetyltransferase
      0.053   10.2   2.9       0.11    9.2   2.0    1.4  1  TIGR01208 rmlA_long: glucose-1-phosphate thymidylyltransferase
      0.059   11.1   5.2      0.073   10.8   1.1    2.3  2  TIGR04008 WcaF: colanic acid biosynthesis acetyltransferase WcaF
      0.082    9.8   8.7       0.13    9.1   6.0    1.4  1  TIGR03535 DapD_actino: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase
       0.24    8.8   6.1       0.39    8.1   1.9    2.7  3  TIGR04016 WcaB: colanic acid biosynthesis acetyltransferase WcaB
        1.4    5.5   9.7        2.4    4.8   6.8    1.3  1  TIGR03536 DapD_gpp: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase


Domain annotation for each model (and alignments):
>> TIGR02287  PaaY: phenylacetic acid degradation protein PaaY
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.0   3.7   7.2e-18   1.7e-15       3     142 ..      45     179 ..      43     198 .. 0.92

  Alignments for each domain:
  == domain 1    score: 55.0 bits;  conditional E-value: 7.2e-18
   TIGR02287   3 eidgltpvvheeayvhpsavligdvivgkrvyvgplaslrgdfgrivlkeganvqdtcvmhgfpgqdtvveenghvghgailhgcrvgrnalvgmnavvmdgavigessivaasafvkagleiaaqvlvvgspakvvrel 142
                 ++ g++p +  +++v ps+ l+g v +g++  v   a lrgd  ++v+ + + + d   + g       ++e   +g +ai+   +v + a +gm   v  g  ig  +i++a + ++ag  ++a  +  gspa  v   
  MMETSP1137-20121227|5276_1  45 KVAGVSPSITGSSFVAPSSNLVGSVKLGAGSSVWYAALLRGDKAPVVVGDKSVIGDRACVSGS-----TIGESVLIGASAIVVDATVENGASIGMGCKVGKGCSIGRGAILTAGSVLRAGTSVPAGEVWGGSPASKVGVA 179
                 789*****************************************************8777774.....4677788***********************************************************876555 PP

>> TIGR02353  NRPS_term_dom: non-ribosomal peptide synthetase terminal domain of unknown function
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.3   6.0   1.5e-11   3.6e-09     132     219 ..      90     182 ..      46     194 .. 0.72

  Alignments for each domain:
  == domain 1    score: 33.3 bits;  conditional E-value: 1.5e-11
   TIGR02353 132 ltiGagvivekevdllgyrvergrlriG......svrvgddafvGtrsvldidtaiGdraqleasSalasgqsipegerWaGsPAqkvgaakrk 219
                 + +G+  ++ + + ++g+ +    l iG        +v++ a +G    + ++ +iG +a l a+S l  g s+p+ge+W GsPA kvg a  +
  MMETSP1137-20121227|5276_1  90 VVVGDKSVIGDRACVSGSTIGESVL-IGasaivvDATVENGASIGMGCKVGKGCSIGRGAILTAGSVLRAGTSVPAGEVWGGSPASKVGVAGEA 182
                 5567777777777777776654443.3311111145889999**********************************************988765 PP

>> TIGR03570  NeuD_NnaD: sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.0      0.12        30     141     165 ..      56      80 ..      46      87 .. 0.72
   2 !   26.8   9.6   3.1e-09   7.5e-07      89     201 ..      58     173 ..      57     174 .. 0.90

  Alignments for each domain:
  == domain 1    score: 2.0 bits;  conditional E-value: 0.12
   TIGR03570 141 fvhiapgatlsGgvkigegvfiGag 165
                  + +ap+++l G vk+g g+ +   
  MMETSP1137-20121227|5276_1  56 SSFVAPSSNLVGSVKLGAGSSVWYA 80 
                 5667888888888888887766554 PP

  == domain 2    score: 26.8 bits;  conditional E-value: 3.1e-09
   TIGR03570  89 lihpsaivsksasiGeGvvimagavi...nadvrigdnviintgavveHdceigdfvhiapgatlsGgvkigegvfiGagAtviqgvtIgkgavvGaGavVvk..dipenavvvGvPa 201
                 ++ ps+ +  s+++G+G+ +   a++   +a v +gd+ +i  +a+v+  ++ig+ v i ++a++  ++++++g+ iG+g++v +g++Ig ga+  aG+v  +  ++p+++v+ G+Pa
  MMETSP1137-20121227|5276_1  58 FVAPSSNLVGSVKLGAGSSVWYAALLrgdKAPVVVGDKSVIGDRACVS-GSTIGESVLIGASAIVV-DATVENGASIGMGCKVGKGCSIGRGAILTAGSVLRAgtSVPAGEVWGGSPA 173
                 5789999*******************4444679**************8.578********999886.899******************************9753389**********9 PP

>> TIGR01173  glmU: UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.1   7.5e-07   0.00018     263     340 ..      90     161 ..      53     165 .. 0.77

  Alignments for each domain:
  == domain 1    score: 18.3 bits;  conditional E-value: 7.5e-07
   TIGR01173 263 veigqdvviepnvilegkvkigedvviGagsvikdsaikenakikaysvlekseigegasvGPfarlRpesvlkeeak 340
                 v +g   vi   + ++g  +ige v iGa +++ d++++++a+i       ++++g+g+s+G  a l  +svl++++ 
  MMETSP1137-20121227|5276_1  90 VVVGDKSVIGDRACVSGS-TIGESVLIGASAIVVDATVENGASIG-----MGCKVGKGCSIGRGAILTAGSVLRAGTS 161
                 666777777777777777.78888888888888888888888888.....6778888888888888888888877765 PP

>> TIGR03532  DapD_Ac: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.2   4.4   0.00019     0.046     140     210 ..      68     138 ..      52     140 .. 0.80
   2 !   13.1   1.0   4.9e-05     0.012     163     213 ..     126     178 ..     124     194 .. 0.78

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 0.00019
   TIGR03532 140 nvhiGaGavl.aGvieppsakpvvieddvliGanavileGvkvGkGavvaaGaiviedvpentvvaGvpakv 210
                  v++GaG+ +    +      pvv+ d+ +iG  a +  G ++G+  ++ a aiv++   en    G+  kv
  MMETSP1137-20121227|5276_1  68 SVKLGAGSSVwYAALLRGDKAPVVVGDKSVIGDRACV-SGSTIGESVLIGASAIVVDATVENGASIGMGCKV 138
                 578999975425566667788***********99975.8*****************9888887777766665 PP

  == domain 2    score: 13.1 bits;  conditional E-value: 4.9e-05
   TIGR03532 163 ieddvliGanavileGvkvGkGavvaaGaivi..edvpentvvaGvpakvike 213
                 +e+   iG    + +G  +G+Ga+++aG+++   + vp+  v +G pa  +  
  MMETSP1137-20121227|5276_1 126 VENGASIGMGCKVGKGCSIGRGAILTAGSVLRagTSVPAGEVWGGSPASKVGV 178
                 56666788888888999999999999999986336799999999999987755 PP

>> TIGR01853  lipid_A_lpxD: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.1   0.7   0.00051      0.12     108     173 ..      54     121 ..      41     123 .. 0.59
   2 !   14.8   3.6   9.1e-06    0.0022     116     175 ..      89     146 ..      87     152 .. 0.88
   3 !   12.2   1.8   5.7e-05     0.014     109     159 ..     111     160 ..     109     172 .. 0.59

  Alignments for each domain:
  == domain 1    score: 9.1 bits;  conditional E-value: 0.00051
   TIGR01853 108 eeeveigpnvviganveiGenvkIgpgvvigdd...vkigdesviyanvviyeevklgknviiqagavi 173
                 + ++ ++p   +   v++G+++ +   +++  d   v++gd+svi  ++ +    ++g+ v i a+a++
  MMETSP1137-20121227|5276_1  54 TGSSFVAPSSNLVGSVKLGAGSSVWYAALLRGDkapVVVGDKSVIGDRACVS-GSTIGESVLIGASAIV 121
                 5555666666666666666666665555554322335666666666666666.5666666666666654 PP

  == domain 2    score: 14.8 bits;  conditional E-value: 9.1e-06
   TIGR01853 116 nvviganveiGenvkIgpgvvigddvkigdesviyanvviyeevklgknviiqagaviGs 175
                  vv+g+++ iG++  + +g++ig+ v ig+   i+  +++ + +++g  +++ +g+ iG 
  MMETSP1137-20121227|5276_1  89 PVVVGDKSVIGDRACV-SGSTIGESVLIGAS-AIVVDATVENGASIGMGCKVGKGCSIGR 146
                 699********99865.899*********85.5777899999**************9996 PP

  == domain 3    score: 12.2 bits;  conditional E-value: 5.7e-05
   TIGR01853 109 eeveigpnvviganveiGenvkIgpgvvigddvkigdesviyanvviyeev 159
                 e+v ig+ +++  ++++ ++  Ig g+ +g++++ig++++++a+ v++  +
  MMETSP1137-20121227|5276_1 111 ESVLIGASAIVV-DATVENGASIGMGCKVGKGCSIGRGAILTAGSVLRAGT 160
                 555555555443.34455555666666666666666666666666665444 PP

>> TIGR03991  alt_bact_glmU: UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   2.1   2.4e-06   0.00057     181     247 ..      69     139 ..      58     145 .. 0.84

  Alignments for each domain:
  == domain 1    score: 17.1 bits;  conditional E-value: 2.4e-06
   TIGR03991 181 vfieegakvkegavldasdGpivigkdakveefsfleg.....pvyigegarvkagarikggtsiGttckiG 247
                 v ++ g +v  +a+l  ++ p+v+g+   + + +++ g      v ig++a v   a +++g siG+ ck+G
  MMETSP1137-20121227|5276_1  69 VKLGAGSSVWYAALLRGDKAPVVVGDKSVIGDRACVSGstigeSVLIGASAIV-VDATVENGASIGMGCKVG 139
                 55678899999999************999998766655222116889999999.99***************9 PP

>> TIGR02091  glgC: glucose-1-phosphate adenylyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.3   1.4e-05    0.0034     296     353 ..      94     153 ..      80     163 .. 0.78

  Alignments for each domain:
  == domain 1    score: 14.3 bits;  conditional E-value: 1.4e-05
   TIGR02091 296 kdslvaegcvisgatvenSvlgervriesesevedsvvlge.vkigenakikk.aiidkn 353
                 ++s++++ +++sg+t+ +Svl   + i  +++ve+   +g+  k+g++++i + ai+  +
  MMETSP1137-20121227|5276_1  94 DKSVIGDRACVSGSTIGESVLIGASAIVVDATVENGASIGMgCKVGKGCSIGRgAILTAG 153
                 579999999999999999999999999999999987666544899999999652565555 PP

>> TIGR03992  Arch_glmU: UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   3.1   2.5e-05    0.0061     239     332 ..      59     155 ..      41     158 .. 0.86

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 2.5e-05
   TIGR03992 239 veenvklkgevvveegavvrsgayieG...pvligknaeiGPnayiRpatvigedvkvgnaveiKnsiimeetkipHlsYvGDSv.igedvNlgagtk 332
                 v +  +l g+v ++ g+ v   a + G   pv++g++++iG  a + ++t ige+v +g+++ + ++ + ++++i+    vG    ig+++ l ag++
  MMETSP1137-20121227|5276_1  59 VAPSSNLVGSVKLGAGSSVWYAALLRGdkaPVVVGDKSVIGDRACVSGST-IGESVLIGASAIVVDATVENGASIGMGCKVGKGCsIGRGAILTAGSV 155
                 789999*******************998889***************8865.8***********************99999997543888888888875 PP

>> TIGR01852  lipid_A_lpxA: acyl-[acyl-carrier-protein]-UDP-N-acetylglucosamine O-acyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.2     0.056        13     120     150 ..      90     119 ..      67     123 .. 0.66
   2 !    9.7   0.0   0.00042       0.1       4      42 ..     123     161 ..     120     173 .. 0.85

  Alignments for each domain:
  == domain 1    score: 2.7 bits;  conditional E-value: 0.056
   TIGR01852 120 cvvgnnvvlannatlaGhvevgdlaiigglv 150
                 +vvg++ v+++ a ++G  ++g+ ++ig+ +
  MMETSP1137-20121227|5276_1  90 VVVGDKSVIGDRACVSGS-TIGESVLIGASA 119
                 345555555555555554.355555555443 PP

  == domain 2    score: 9.7 bits;  conditional E-value: 0.00042
   TIGR01852   4 taiieegaelgedveigpfavvgkevkigegvelkshvv 42 
                  a +e+ga++g + ++g  + +g+++ +++g++l++   
  MMETSP1137-20121227|5276_1 123 DATVENGASIGMGCKVGKGCSIGRGAILTAGSVLRAGTS 161
                 589999999999999999999999999999999987655 PP

>> TIGR03308  phn_thr-fam: phosphonate metabolim protein, transferase hexapeptide repeat family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.2   0.9    0.0071       1.7     106     143 ..      87     123 ..      76     129 .. 0.85
   2 !   11.9   1.1   0.00013     0.032     115     159 ..     130     176 ..     123     190 .. 0.85

  Alignments for each domain:
  == domain 1    score: 6.2 bits;  conditional E-value: 0.0071
   TIGR03308 106 akrvtiGhdvWiGhGavilPgvtiGnGavvaagavvtk 143
                 +  v++G    iG  a +  g tiG+  +++a+a+v +
  MMETSP1137-20121227|5276_1  87 KAPVVVGDKSVIGDRACV-SGSTIGESVLIGASAIVVD 123
                 457999********9987.699************9975 PP

  == domain 2    score: 11.9 bits;  conditional E-value: 0.00013
   TIGR03308 115 vWiGhGavilPgvtiGnGavvaagavvt..kdvasytivaGvpakli 159
                   iG G  +  g +iG+Ga+++ag+v+     v++  + +G+pa+ +
  MMETSP1137-20121227|5276_1 130 ASIGMGCKVGKGCSIGRGAILTAGSVLRagTSVPAGEVWGGSPASKV 176
                 5699**********************862267999999999999865 PP

>> TIGR01172  cysE: serine O-acetyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.1      0.65   1.6e+02     113     145 ..      50      82 ..      25      93 .. 0.77
   2 ?   11.1   2.3   0.00028     0.066     108     157 ..      83     132 ..      54     134 .. 0.80
   3 ?    5.2   0.5     0.018       4.2     115     161 ..     125     173 ..     123     174 .. 0.79

  Alignments for each domain:
  == domain 1    score: 0.1 bits;  conditional E-value: 0.65
   TIGR01172 113 hPtvkegvvigagakvLGnievgenakiGansv 145
                  P +     ++ +++++G++++g+++++  +++
  MMETSP1137-20121227|5276_1  50 SPSITGSSFVAPSSNLVGSVKLGAGSSVWYAAL 82 
                 688888889999999999999999998866665 PP

  == domain 2    score: 11.1 bits;  conditional E-value: 0.00028
   TIGR01172 108 ekgkRhPt.vkegvvigagakvLGnievgenakiGansvvlkdvpaeatvv 157
                  +g++ P  v+++ vig  a v G+ ++ge + iGa+++v++   ++ + +
  MMETSP1137-20121227|5276_1  83 LRGDKAPVvVGDKSVIGDRACVSGS-TIGESVLIGASAIVVDATVENGASI 132
                 467888862699************8.8**************9877665555 PP

  == domain 3    score: 5.2 bits;  conditional E-value: 0.018
   TIGR01172 115 tvkegvvigagakvLGnievgenakiGansvvl..kdvpaeatvvGvpa 161
                 tv++g+ ig g kv    ++g +a + a+sv    + vpa+ +  G pa
  MMETSP1137-20121227|5276_1 125 TVENGASIGMGCKVGKGCSIGRGAILTAGSVLRagTSVPAGEVWGGSPA 173
                 7889999999999999999999999999999752246787777777776 PP

>> TIGR01208  rmlA_long: glucose-1-phosphate thymidylyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   2.0   0.00044      0.11     247     330 ..      61     149 ..      41     158 .. 0.66

  Alignments for each domain:
  == domain 1    score: 9.2 bits;  conditional E-value: 0.00044
   TIGR01208 247 ekskieGrvkveegaki.vnsvirG...PaviGedviiensyigpytsigegvvikd.aeveksivldesviegvekriedsviGkkvk 330
                  +s++ G vk+++g+ +   + +rG   P+v+G++ +i +      ++ige v i   a v ++ v ++++i    k  + + iG+ + 
  MMETSP1137-20121227|5276_1  61 PSSNLVGSVKLGAGSSVwYAALLRGdkaPVVVGDKSVIGDRACVSGSTIGESVLIGAsAIVVDATVENGASIGMGCKVGKGCSIGRGAI 149
                 56788888888888888556667766668888888888877666677778777775414456677777777755544445566666555 PP

>> TIGR04008  WcaF: colanic acid biosynthesis acetyltransferase WcaF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   1.1    0.0003     0.073     104     164 ..      69     128 ..      43     138 .. 0.78
   2 ?    1.7   0.2      0.18        44     138     173 ..     137     174 ..     124     179 .. 0.76

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 0.0003
   TIGR04008 104 sylctgshdyaskhfdinatpivigekcwlatdvfvapgvtigdgtvvgarssvfkslpan 164
                   l +gs  + ++ +  + +p+v+g+k+ +  d     g tig++ ++ga + v+ +   n
  MMETSP1137-20121227|5276_1  69 VKLGAGSSVWYAALLRGDKAPVVVGDKSVIG-DRACVSGSTIGESVLIGASAIVVDATVEN 128
                 4577788888888888899999999999775.55666799999999999999888776655 PP

  == domain 2    score: 1.7 bits;  conditional E-value: 0.18
   TIGR04008 138 fvapgvtigdgtvvgarssvf..kslpankicrgnpav 173
                  v  g +ig g+++ a s +    s+pa ++  g pa 
  MMETSP1137-20121227|5276_1 137 KVGKGCSIGRGAILTAGSVLRagTSVPAGEVWGGSPAS 174
                 57788999999999887755322589999999999986 PP

>> TIGR03535  DapD_actino: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   6.0   0.00056      0.13     198     264 ..      88     158 ..      69     206 .. 0.82

  Alignments for each domain:
  == domain 1    score: 9.1 bits;  conditional E-value: 0.00056
   TIGR03535 198 aGvvvgdGsdiGGGasimGtlsGG....GkevisiGercllGansGvGislGddcvveaGlyvtaGtkvtl 264
                 a vvvgd s iG  a + G   G     G + i +   +  Ga  G+G  +G  c +  G  +taG+ +  
  MMETSP1137-20121227|5276_1  88 APVVVGDKSVIGDRACVSGSTIGEsvliGASAIVVDATVENGASIGMGCKVGKGCSIGRGAILTAGSVLRA 158
                 569************99998877544447888999999999**************9999999999987655 PP

>> TIGR04016  WcaB: colanic acid biosynthesis acetyltransferase WcaB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0      0.84     2e+02     116     143 ..      68      91 ..      55     100 .. 0.65
   2 ?    8.1   1.9    0.0016      0.39      94     140 ..      91     136 ..      79     141 .. 0.70
   3 ?   -0.4   0.0      0.69   1.7e+02      33      49 ..     210     226 ..     195     234 .. 0.83

  Alignments for each domain:
  == domain 1    score: -0.7 bits;  conditional E-value: 0.84
   TIGR04016 116 nvtigagsvvldsipdnalvvgekarvk 143
                  v +gags v       al+ g+ka v 
  MMETSP1137-20121227|5276_1  68 SVKLGAGSSVW----YAALLRGDKAPVV 91 
                 57778887654....3455555555543 PP

  == domain 2    score: 8.1 bits;  conditional E-value: 0.0016
   TIGR04016  94 vigngvelganvillgditignnvtigagsvvldsipdnalvvgeka 140
                 v+g+   +g    + g  tig+ v iga ++v+d+  +n   +g  +
  MMETSP1137-20121227|5276_1  91 VVGDKSVIGDRACVSG-STIGESVLIGASAIVVDATVENGASIGMGC 136
                 5566666666665555.588888888888888888888777666554 PP

  == domain 3    score: -0.4 bits;  conditional E-value: 0.69
   TIGR04016  33 rllteclfgyeiqaaat 49 
                 rl+ + lf y+i+ a t
  MMETSP1137-20121227|5276_1 210 RLIDQTLFDYKIKRAHT 226
                 8999********99877 PP

>> TIGR03536  DapD_gpp: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   6.8    0.0098       2.4     223     287 ..      88     156 ..      67     160 .. 0.79

  Alignments for each domain:
  == domain 1    score: 4.8 bits;  conditional E-value: 0.0098
   TIGR03536 223 aGvlvGkGsdlGGGastmGtlsGG....GnivisvGeecllGanaGiGiplGdrctveaGlyitaGtkv 287
                 a v+vG+ s +G  a + G+  G     G+  i v      Ga  G+G  +G  c++  G  +taG+ +
  MMETSP1137-20121227|5276_1  88 APVVVGDKSVIGDRACVSGSTIGEsvliGASAIVVDATVENGASIGMGCKVGKGCSIGRGAILTAGSVL 156
                 7899********98877666555411114444667777888*************************965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (262 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       128  (0.0312043); expected 82.0 (0.02)
Passed bias filter:                       98  (0.0238908); expected 82.0 (0.02)
Passed Vit filter:                        24  (0.0058508); expected 4.1 (0.001)
Passed Fwd filter:                        17  (0.00414432); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              17  [number of targets reported over threshold]
# CPU time: 0.41u 0.18s 00:00:00.59 Elapsed: 00:00:00.64
# Mc/sec: 540.33
//
Query:       MMETSP1137-20121227|5277_1  [L=109]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (109 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       108  (0.0263286); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.14s 00:00:00.28 Elapsed: 00:00:00.28
# Mc/sec: 513.81
//
Query:       MMETSP1137-20121227|5278_1  [L=176]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0057   13.7  34.5     0.0072   13.4  23.9    1.2  1  TIGR02794 tolA_full: protein TolA
  ------ inclusion threshold ------
      0.014   12.2   5.2      0.016   11.9   3.6    1.1  1  TIGR00206 fliF: flagellar M-ring protein FliF


Domain annotation for each model (and alignments):
>> TIGR02794  tolA_full: protein TolA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4  23.9   3.5e-06    0.0072     167     230 ..      88     172 ..      64     176 .] 0.79

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 3.5e-06
   TIGR02794 167 akaaaeakkkaEa......................e..eakkkaeaeak.KakaeaeaKakaeeakaKaeaeAkaKAeaeAkaKaeaea 230
                 + aaa akk+aE                       +  +a +k ++e++ K+++ a++Ka+ ee +aKa     aKA+++A++Ka+ ++
  MMETSP1137-20121227|5278_1  88 KSAAARAKKQAELaagsgskgggsaglqervgdtqAkiAASQKEKEERErKKQELAAKKAADEEKRAKAL----AKAAKDAEKKAAEAK 172
                 5677888888887888888888887777556655426778888888888899999999998887777777....699***999999554 PP

>> TIGR00206  fliF: flagellar M-ring protein FliF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   3.6     8e-06     0.016     279     366 ..      65     158 ..      57     170 .. 0.70

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 8e-06
   TIGR00206 279 kksteeeyePvekes.......sesvvvSeqkleeekqGagykqgGvpGaesninaevqdlkdntenkeeekeeksvqlNekknyevkrtireik 366
                 +k++ +++  +  ++        +s++  ++k+ e   G+g k gG +G ++ ++ + q   + +++++ee+e k  +l  kk  ++++ ++  +
  MMETSP1137-20121227|5278_1  65 RKQELKIVTHNSADDldgggngQKSAAARAKKQAELAAGSGSKGGGSAGLQERVG-DTQAKIAASQKEKEERERKKQELAAKKAADEEKRAKALA 158
                 55555555555544466666666788888899999******************99.666555555555555555554777788888888877765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (176 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       385  (0.0938567); expected 82.0 (0.02)
Passed bias filter:                      142  (0.0346173); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.21u 0.16s 00:00:00.37 Elapsed: 00:00:00.38
# Mc/sec: 611.32
//
Query:       MMETSP1137-20121227|5279_1  [L=1097]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.6e-31  105.2   0.0    2.5e-16   57.2   0.0    2.7  3  TIGR03253 oxalate_frc: formyl-CoA transferase
  ------ inclusion threshold ------
       0.69    6.9   4.8        1.2    6.1   3.3    1.3  1  TIGR00599 rad18: DNA repair protein rad18


Domain annotation for each model (and alignments):
>> TIGR03253  oxalate_frc: formyl-CoA transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.9   0.0   6.9e-16   1.4e-12       2     205 ..      80     288 ..      79     320 .. 0.83
   2 !   57.2   0.0   1.2e-19   2.5e-16       4     191 ..     502     693 ..     499     710 .. 0.85
   3 ?   -2.2   0.0      0.13   2.6e+02     386     405 ..     912     931 ..     906     934 .. 0.88

  Alignments for each domain:
  == domain 1    score: 44.9 bits;  conditional E-value: 6.9e-16
   TIGR03253   2 kaleGikvldfthvqsGPsctqllawlGadvikierpgvGditrgqlrdipdvdslyftmlnankrsitldikapeGkevleelikkadvlvenfkPGaldrmGftwekiqelnPrlilasikGfdeg..sayenvkayenvaqaaGGaasttGfedG....vPlvsaaalGdsntGlhlvigilaallqrektG...rGqrvavamqdavln 205
                 k+l Gi v+++    + P +   l  lG+ v  i rp     t+g   +i    s     ln  k  it+d+ ++ G++ l+el+  adv+v  +   +++++       + +n r+i  s+ Gf+ +  sa  ++ a+e+   aa G     G +          s   l  +   +  +++i++al++r+k+G   +G r++v +  a+l+
  MMETSP1137-20121227|5279_1  80 KPLAGISVIEIGTYLAAPLVGTHLLSLGSTVTSIVRP---PHTKGAAAEIA-WGSATRAALNEGKTVITVDLTTHSGRDELHELLASADVVVVGLSQAVAQKLRVDAISCHAVNERIIHMSLPGFGSAdeSALGDLAAFESTILAAAGVFRDMGVNRQlmcrEASFSPLPLASAYGSVIAALAIVCALYHRHKSGssaQGSRIEVPLASALLD 288
                 89*********9999999987777789**********...56888888886.45667789*****************************************************************8762257789********************999433322333445666666788899***********99555689999988888774 PP

  == domain 2    score: 57.2 bits;  conditional E-value: 1.2e-19
   TIGR03253   4 leGikvldfthvqsGPsctqllawlGadvikierpgvGditrgqlrdipdvdslyftmlnankrsitldikap..e......GkevleelikkadvlvenfkPGaldrmGftwekiqelnPrlilasikGfd...egsayenvkayenvaqaaGGaasttGfedGvPlvsaaalG..dsntGlhlvigilaallqrektGr 191
                 l+Gik++d+++v +GP+   +la +Ga+v k++ p+            p++  ly +  n  krs+ l++  +  e      G++ le+li +advlv n    +l+r+    + ++++n  ++l+    ++   e  + +    y+   qaa G +   G   G  +   a +G  d  +G+  +++ +aal +re+  r
  MMETSP1137-20121227|5279_1 502 LDGIKIVDMANVIAGPTIGAMLARYGAEVTKVDSPNP--------IYAPEITVLYGIATNKGKRSVLLNVNDSgaEsedgvgGRQALEKLISQADVLVVNCTEQCLERIKLRPDDLERINKNIVLTRFDAYGgplEQGPLAGHNGYDDNLQAALGIMERFGGGMGR-VDEHAHVGtiDVVAGVAGALATIAALFHRERRTR 693
                 89*********************************43........45799******************9975322122344489******************************************99999744455699999**************998877763.34456666448999***************99766 PP

  == domain 3    score: -2.2 bits;  conditional E-value: 0.13
   TIGR03253 386 aPllGehtdevlkelGlddd 405
                 aP  G ht++vl e+G+d +
  MMETSP1137-20121227|5279_1 912 APSYGAHTNQVLAEVGVDAK 931
                 899*************9865 PP

>> TIGR00599  rad18: DNA repair protein rad18
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   3.3    0.0006       1.2      29      69 ..     964    1005 ..     943    1009 .. 0.89

  Alignments for each domain:
  == domain 1    score: 6.1 bits;  conditional E-value: 0.0006
   TIGR00599   29 ChvCkdffkaPvltsCsHtFCslCiRrcLse.epkCPlCrae 69  
                  C vC ++    +  sCsH  C  C  +c +     CP+Cr +
  MMETSP1137-20121227|5279_1  964 CPVCLEHGTELMYLSCSHFLCGGCASKCDEAgMQSCPICRHP 1005
                  99**************************8762468****975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1097 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       102  (0.0248659); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.64u 0.12s 00:00:00.76 Elapsed: 00:00:00.80
# Mc/sec: 1809.90
//
Query:       MMETSP1137-20121227|5280_1  [L=200]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (200 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        44  (0.0107265); expected 82.0 (0.02)
Passed bias filter:                       34  (0.00828864); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.11s 00:00:00.28 Elapsed: 00:00:00.81
# Mc/sec: 325.90
//
Query:       MMETSP1137-20121227|5282_1  [L=194]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (194 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       108  (0.0263286); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.14s 00:00:00.32 Elapsed: 00:00:00.45
# Mc/sec: 569.02
//
Query:       MMETSP1137-20121227|5284_1  [L=259]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (259 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       155  (0.0377864); expected 82.0 (0.02)
Passed bias filter:                      127  (0.0309605); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.13s 00:00:00.36 Elapsed: 00:00:00.43
# Mc/sec: 795.00
//
Query:       MMETSP1137-20121227|5285_1  [L=296]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (296 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       158  (0.0385178); expected 82.0 (0.02)
Passed bias filter:                      133  (0.0324232); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.15s 00:00:00.41 Elapsed: 00:00:00.39
# Mc/sec: 1001.76
//
Query:       MMETSP1137-20121227|5286_1  [L=462]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.4e-14   50.8   0.0      4e-07   27.0   0.0    2.2  2  TIGR01988 Ubi-OHases: ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family
    1.6e-12   44.7   0.0    3.5e-06   23.9   0.0    2.1  2  TIGR01984 UbiH: 2-polyprenyl-6-methoxyphenol 4-hydroxylase
    2.2e-11   41.8   0.0    3.7e-11   41.1   0.0    1.2  1  TIGR02032 GG-red-SF: geranylgeranyl reductase family
    8.9e-11   39.2   0.2    4.9e-06   23.5   0.0    2.5  2  TIGR01989 COQ6: ubiquinone biosynthesis monooxygenase COQ6
      8e-08   29.3   0.6    0.00024   17.9   0.0    3.1  3  TIGR02360 pbenz_hydroxyl: 4-hydroxybenzoate 3-monooxygenase
    3.2e-06   23.9   0.1    0.00085   15.9   0.0    2.2  2  TIGR03219 salicylate_mono: salicylate 1-monooxygenase
     0.0098   12.3   0.0      0.015   11.7   0.0    1.2  1  TIGR01318 gltD_gamma_fam: glutamate synthase, small subunit
  ------ inclusion threshold ------
      0.019   11.2   0.0      0.031   10.4   0.0    1.2  1  TIGR03997 mycofact_OYE_2: mycofactocin system FadH/OYE family oxidoreductase 2
      0.023   11.3   0.0      0.041   10.5   0.0    1.4  1  TIGR00275 TIGR00275: flavoprotein, HI0933 family


Domain annotation for each model (and alignments):
>> TIGR01988  Ubi-OHases: ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.6   0.0     4e-08   1.8e-05       2     176 ..      13     198 ..      12     203 .. 0.76
   2 !   27.0   0.0   8.7e-10     4e-07     278     345 ..     316     378 ..     305     404 .. 0.79

  Alignments for each domain:
  == domain 1    score: 21.6 bits;  conditional E-value: 4e-08
   TIGR01988   2 ivIvGgGlvGlalAlaLassa......dlkvalveakaaek.akspafdnRvsAlsaasiellekigvwdklekkraqpiqkirvsdagskgalefdaaevgaeaLg..yvvenkvlqqaLlealqekkn...kvtllapaeveeleresdaveltlsdget..leakLlvgADGanSkvrqaagiktt 176
                 +v+vG+G+ Gl   +++ +++        +v+lve+ +      +++ +++ s +   s++ l +i+  ++l +   + ++k+ v  + ++  +  ++ e++++++g  yvv+ + + +a+   l++k +    +t++ +++v+ + +++++  ++ ++g    +  +Ll+g+DG +S+vr a+  +++
  MMETSP1137-20121227|5286_1  13 VVVVGAGPSGLLACINFLNRNansndvTYHVTLVERGEDYGaLDASGLEKKRSWMIGLSTHGLTAIRRVPSLYE---EYVSKVGVPVHATALCVGSRKFEAKSDEIGenYVVDRNFVVAAIARFLKDKFEtskYLTQRYNTKVNFVDSDERRIFVRDQNGXDeyIPYDLLIGCDGVRSQVRAALVANHR 198
                 89*********99998776666999888999***9875444477778999999999999*******98888888...455555565555555555444444566666558999888888877777777665546777888888888888888888888876666*****************99876655 PP

  == domain 2    score: 27.0 bits;  conditional E-value: 8.7e-10
   TIGR01988 278 ervaliGdAAhtvhPlAGQGlNlGlrDvaaLaevlaeavergedigslavLkrYererradnaallaa 345
                  r+a+ GdAAh + P  GQG+N  l D+aa  ++l ++     di   avL ++++er ++ +al+ +
  MMETSP1137-20121227|5286_1 316 LRLAIMGDAAHATSPSIGQGMNTALADAAAFXDLLDRHY---DDID--AVLPAFSKERVKEGNALTSI 378
                 59*********************************9754...4566..78999999998887776654 PP

>> TIGR01984  UbiH: 2-polyprenyl-6-methoxyphenol 4-hydroxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.0   2.9e-07   0.00013       2     174 ..      13     199 ..      12     205 .. 0.69
   2 !   23.9   0.0   7.7e-09   3.5e-06     277     340 ..     317     378 ..     308     405 .. 0.83

  Alignments for each domain:
  == domain 1    score: 18.7 bits;  conditional E-value: 2.9e-07
   TIGR01984   2 viivGgglvGlslAlaLsrks......klkialieak.saeaa.kssfdarslalsagskqileklgiweklekeatpikdihvsdrgafgalelraeevalpaLG..yVveladlkqallkrlaekkkiklyapael....keierekdeaevkldneq..kleakLlvaAdGanskvreslsiaeee 174
                 v++vG+g++Gl+  + + +          +++l+e   +  a   s+ +++   +   s++ l+++   ++l +  + ++++ v  + ++  +  r+ e + + +G  yVv+ + + +a+++ l+ k + + y  +++    + +++++ +  v+ +n+    +  +Ll+ +dG +s+vr +l +++  
  MMETSP1137-20121227|5286_1  13 VVVVGAGPSGLLACINFLNRNansndvTYHVTLVERGeDYGALdASGLEKKRSWMIGLSTHGLTAIRRVPSLYE--EYVSKVGVPVHATALCVGSRKFEAKSDEIGenYVVDRNFVVAAIARFLKDKFETSKYLTQRYntkvNFVDSDERRIFVRDQNGXdeYIPYDLLIGCDGVRSQVRAALVANHRD 199
                 89*********9999876655588988899*****861455555556665555555566677888887888655..456777777777777777777788888888778998877776666666665555555555441000555555555555545444779******************99888765 PP

  == domain 2    score: 23.9 bits;  conditional E-value: 7.7e-09
   TIGR01984 277 rvvlignaAqtlhPiAgQGfNlGlrDvltLaevledarkdlGeaallqeylkerkeDraatigl 340
                 r++++g+aA+   P  gQG+N  l D+++  ++l ++++d+   a+l +++ker +  +a++++
  MMETSP1137-20121227|5286_1 317 RLAIMGDAAHATSPSIGQGMNTALADAAAFXDLLDRHYDDID--AVLPAFSKERVKEGNALTSI 378
                 99************************************9985..78999999998877766655 PP

>> TIGR02032  GG-red-SF: geranylgeranyl reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.1   0.0   8.1e-14   3.7e-11       3     288 ..      13     341 ..      12     346 .. 0.72

  Alignments for each domain:
  == domain 1    score: 41.1 bits;  conditional E-value: 8.1e-14
   TIGR02032   3 vvvvGaGpaGssaAlrl.......akkGlrVlllekkelprekeCggalskraveelelpk............elivnevr...kariispngekveieee.eeealvidRkefDelLaekAqea..gaelllettvlsveied.ekvkvevred..ekkevtakivigAdGakskvakklglkkekrelava..lraeveeeveeevdedsvevyidkglvpggYgWvfPkgdgtanvGvgvls..........eekedlkkklkeflaerp.......eklkd..aeevevkgaliPirradektvtgnvllvGDAAglVkPltGeGIayamv 288
                 vvvvGaGp+G  a            +  ++V l+e+ e  +++  +g+ +kr+++     +            e+ v++v    +a+ +  +++k e++++  +e +v+dR+     +a+  +++   ++ l+++++++v + d +++++ vr++    + +  +++ig dG +s+v+ +l  ++++ e +v    + + +++ e +++ d  ++yi+ +  p++ g  +P++ g++n+ +g                   + ++ ++l+++        e++ +  +++   +++++ ++ + ++t +  + ++GDAA    P  G G+++a+ 
  MMETSP1137-20121227|5286_1  13 VVVVGAGPSGLLACINFlnrnansNDVTYHVTLVERGEDYGALDASGLEKKRSWMIGLSTHgltairrvpslyEEYVSKVGvpvHATALCVGSRKFEAKSDeIGENYVVDRNFVVAAIARFLKDKfeTSKYLTQRYNTKVNFVDsDERRIFVRDQngXDEYIPYDLLIGCDGVRSQVRAALVANHRDFESSVGdiFNRYXSVHIELPEHLDGNMIYITPQCLPNFNGIALPETGGKVNLAMGCPTsakvpaalesD----DVTAVADYLRDNFkafalpcEAVAKqwVAQPWNTTGMVHCNFYHSSTLR--LAIMGDAAHATSPSIGQGMNTALA 341
                 8*********8776544111111134579************************9988877779999999888855666665788999999999997777775799******87777777766654225677888888888888886666777766556777889*****************97744444443311445555567888999999*************************988887777898864332....3444444444444122244422222223344455555666655555554..4589******************86 PP

>> TIGR01989  COQ6: ubiquinone biosynthesis monooxygenase COQ6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.1   0.0   1.6e-05    0.0071      97     189 ..     104     193 ..      11     201 .. 0.68
   2 !   23.5   0.0   1.1e-08   4.9e-06     332     368 ..     315     351 ..     288     402 .. 0.82

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 1.6e-05
   TIGR01989  97 alieferkdvkeelafiiEndvilasllerlkeeksdnvkvknkaklksvtlpkkspndnsnlvkikledgetlktklliGADGanSkvRkaa 189
                 ++ +fe+k  +    ++++ + ++a++ + lk++  +  k +++   ++v++   + +++   v+ +    e++  +lliG DG++S+vR a 
  MMETSP1137-20121227|5286_1 104 GSRKFEAKSDEIGENYVVDRNFVVAAIARFLKDKF-ETSKYLTQRYNTKVNFV--DSDERRIFVRDQNGXDEYIPYDLLIGCDGVRSQVRAAL 193
                 55566665333333599999999999999999998.55555555555555555..45666666666667779999***************875 PP

  == domain 2    score: 23.5 bits;  conditional E-value: 1.1e-08
   TIGR01989 332 tervALvGDAAHrvHPLAGqGvNlGfsDvesLvkala 368
                 t r+A++GDAAH + P  GqG+N+ + D+++    l+
  MMETSP1137-20121227|5286_1 315 TLRLAIMGDAAHATSPSIGQGMNTALADAAAFXDLLD 351
                 4599*************************99888776 PP

>> TIGR02360  pbenz_hydroxyl: 4-hydroxybenzoate 3-monooxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.0     0.015       6.8       3      18 ..      11      26 ..       9      52 .. 0.83
   2 !    4.9   0.0    0.0045       2.1     128     175 ..     151     198 ..     117     205 .. 0.74
   3 !   17.9   0.0   5.2e-07   0.00024     280     322 ..     317     359 ..     310     371 .. 0.87

  Alignments for each domain:
  == domain 1    score: 3.2 bits;  conditional E-value: 0.015
   TIGR02360  3 tqvaiigaGpsGlllg 18
                ++v+++gaGpsGll  
  MMETSP1137-20121227|5286_1 11 VRVVVVGAGPSGLLAC 26
                689**********954 PP

  == domain 2    score: 4.9 bits;  conditional E-value: 0.0045
   TIGR02360 128 rlhdlesdrpkvtf.ekdgeekrldcdfiaGcdGfhGvsrksipaeklk 175
                 +++ ++sd+ ++    ++g  + +  d ++GcdG     r+++ a++ +
  MMETSP1137-20121227|5286_1 151 KVNFVDSDERRIFVrDQNGXDEYIPYDLLIGCDGVRSQVRAALVANH-R 198
                 4444455555554315789999******************9987765.3 PP

  == domain 3    score: 17.9 bits;  conditional E-value: 5.2e-07
   TIGR02360 280 rlflaGdaahivpptGakGlnlaasdvaylyealleaykekds 322
                 rl + Gdaah   p+  +G+n+a +d a + + l ++y++ d+
  MMETSP1137-20121227|5286_1 317 RLAIMGDAAHATSPSIGQGMNTALADAAAFXDLLDRHYDDIDA 359
                 78899*********************************98764 PP

>> TIGR03219  salicylate_mono: salicylate 1-monooxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.8   0.0    0.0021      0.96     120     169 ..     146     197 ..     113     204 .. 0.74
   2 !   15.9   0.0   1.9e-06   0.00085     300     352 ..     316     365 ..     289     407 .. 0.80

  Alignments for each domain:
  == domain 1    score: 5.8 bits;  conditional E-value: 0.0021
   TIGR03219 120 akfgkkaksieeqaeevevsfedGtey..radlligadGiksalrdyvlega 169
                  +++ k++ ++  + ++ v  ++G       dllig dG++s +r  ++  +
  MMETSP1137-20121227|5286_1 146 QRYNTKVNFVDSDERRIFVRDQNGXDEyiPYDLLIGCDGVRSQVRAALVANH 197
                 4566666667777777888888886541246**************9987655 PP

  == domain 2    score: 15.9 bits;  conditional E-value: 1.9e-06
   TIGR03219 300 GrvaliGdaahamlphqGaGaGqGledayllarlledtkleaedlpellevyd 352
                  r+a++Gdaaha  p  G G    l da  +  ll+      +d++++l ++ 
  MMETSP1137-20121227|5286_1 316 LRLAIMGDAAHATSPSIGQGMNTALADAAAFXDLLDRH---YDDIDAVLPAFS 365
                 4899******************************9864...455666666654 PP

>> TIGR01318  gltD_gamma_fam: glutamate synthase, small subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.7   0.0   3.3e-05     0.015     141     169 ..      10      39 ..       3      60 .. 0.82

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 3.3e-05
   TIGR01318 141 gkrvaviGaGpaGl.acadvlaraGvkvvv 169
                   rv v+GaGp+Gl ac + l+r+    +v
  MMETSP1137-20121227|5286_1  10 PVRVVVVGAGPSGLlACINFLNRNANSNDV 39 
                 579**********559*******9876554 PP

>> TIGR03997  mycofact_OYE_2: mycofactocin system FadH/OYE family oxidoreductase 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   6.9e-05     0.031     375     415 ..       6      53 ..       2      61 .. 0.72

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 6.9e-05
   TIGR03997 375 karrrkkvlvvGgGPaGleaaataarr.......GhrvtllereeelG 415
                 +++++ +v+vvG+GP+Gl a +   +r        ++vtl+er+e  G
  MMETSP1137-20121227|5286_1   6 MPTQPVRVVVVGAGPSGLLACINFLNRnansndvTYHVTLVERGEDYG 53 
                 678889*************98654333111112257889999988776 PP

>> TIGR00275  TIGR00275: flavoprotein, HI0933 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0     9e-05     0.041       1      22 [.      13      34 ..      13      59 .. 0.67

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 9e-05
   TIGR00275  1 viiiGgGaaGlmaAitaaeega 22
                v+++G+G++Gl+a i+  +++a
  MMETSP1137-20121227|5286_1 13 VVVVGAGPSGLLACINFLNRNA 34
                79*************9877443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (462 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       143  (0.034861); expected 82.0 (0.02)
Passed bias filter:                      140  (0.0341297); expected 82.0 (0.02)
Passed Vit filter:                        26  (0.00633837); expected 4.1 (0.001)
Passed Fwd filter:                         9  (0.00219405); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.35u 0.28s 00:00:00.63 Elapsed: 00:00:00.57
# Mc/sec: 1051.36
//
Query:       MMETSP1137-20121227|5287_1  [L=345]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (345 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       115  (0.0280351); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.27s 00:00:00.40 Elapsed: 00:00:00.41
# Mc/sec: 1110.64
//
Query:       MMETSP1137-20121227|5288_1  [L=819]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (819 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       126  (0.0307167); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.47u 0.22s 00:00:00.69 Elapsed: 00:00:00.46
# Mc/sec: 2349.98
//
Query:       MMETSP1137-20121227|5289_1  [L=327]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (327 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       125  (0.0304729); expected 82.0 (0.02)
Passed bias filter:                      104  (0.0253535); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.14s 00:00:00.39 Elapsed: 00:00:00.40
# Mc/sec: 1079.01
//
Query:       MMETSP1137-20121227|5291_1  [L=80]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (80 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        33  (0.00804486); expected 82.0 (0.02)
Passed bias filter:                       33  (0.00804486); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.13s 00:00:00.27 Elapsed: 00:00:00.27
# Mc/sec: 391.08
//
Query:       MMETSP1137-20121227|5292_1  [L=230]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.025   12.2   1.4       0.08   10.6   1.0    1.9  1  TIGR01439 lp_hng_hel_AbrB: transcriptional regulator, AbrB family


Domain annotation for each model (and alignments):
>> TIGR01439  lp_hng_hel_AbrB: transcriptional regulator, AbrB family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   1.0   1.9e-05      0.08       3      43 ..      12      53 ..      10      54 .. 0.76

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 1.9e-05
   TIGR01439  3 kVtkkGqIvIPKeiRekLglkeG..dklevirvedgeIilrpk 43
                 V  +G+I+IPK + e L + e   + l v r  dg+I++++k
  MMETSP1137-20121227|5292_1 12 EVAPNGIITIPKTVFEPLKTNEAgiSNLTVRRL-DGTIEVVKK 53
                6889*********98888887763455777766.777888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (230 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        96  (0.0234032); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.23u 0.11s 00:00:00.34 Elapsed: 00:00:00.34
# Mc/sec: 892.87
//
Query:       MMETSP1137-20121227|5294_1  [L=252]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      4e-10   36.7  10.0    5.4e-10   36.2   7.0    1.1  1  TIGR00879 SP: MFS transporter, sugar porter (SP) family


Domain annotation for each model (and alignments):
>> TIGR00879  SP: MFS transporter, sugar porter (SP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.2   7.0   1.3e-13   5.4e-10     383     508 ..      77     194 ..      71     196 .. 0.87

  Alignments for each domain:
  == domain 1    score: 36.2 bits;  conditional E-value: 1.3e-13
   TIGR00879 383 GaagmaiclfvlgilgvssvtgsskaasivaivfillfiaayalgigpvvwvlvsEifplsvRpkgiaiavaanwlanfiiallfpimlensigqgvvFiffgalnvlalilvyfflpetkgltle 508
                 Ga gma++   ++ +g+ +       a + ++v++ +  +++++++++ vw +++E+ p+++R+ g+a++ + +w+ +f  + +  +++  ++++  +  +f + +++al +v  ++pet + +l 
  MMETSP1137-20121227|5294_1  77 GAGGMALAYAAIA-YGYAGR------APMTIGVGFTALFFCWSASWAGLVWTVSAELLPSHLRAHGMALTIVLYWVLAFATSEVVETLMF-ELTPQRACALFSLGCLAALGYVAACVPETLHSSLI 194
                 6888999999998.444444......4799999999999****************************************99999999888.5777778888888888*************988876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (252 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       104  (0.0253535); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.21u 0.18s 00:00:00.39 Elapsed: 00:00:00.38
# Mc/sec: 875.30
//
Query:       MMETSP1137-20121227|5296_1  [L=284]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (284 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       113  (0.0275475); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.14s 00:00:00.37 Elapsed: 00:00:00.36
# Mc/sec: 1041.25
//
Query:       MMETSP1137-20121227|5297_1  [L=420]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.8e-28   97.2   0.4    2.1e-26   91.0   0.3    2.3  1  TIGR01289 LPOR: light-dependent protochlorophyllide reductase
    3.4e-14   50.5   0.0    5.7e-14   49.8   0.0    1.4  1  TIGR01963 PHB_DH: 3-hydroxybutyrate dehydrogenase
      2e-13   47.4   0.1    2.6e-13   47.0   0.1    1.1  1  TIGR02632 RhaD_aldol-ADH: rhamnulose-1-phosphate aldolase/alcohol dehydrogenase
    6.3e-12   43.5   0.0    8.7e-11   39.8   0.0    2.0  2  TIGR01830 3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase
    1.7e-08   32.3   0.0    1.5e-06   25.9   0.0    2.1  2  TIGR01829 AcAcCoA_reduct: acetoacetyl-CoA reductase
    6.5e-08   30.2   0.0    1.2e-07   29.4   0.0    1.4  1  TIGR01832 kduD: 2-deoxy-D-gluconate 3-dehydrogenase
    1.7e-07   28.7   0.1    3.4e-07   27.7   0.1    1.4  1  TIGR01831 fabG_rel: putative 3-oxoacyl-(acyl-carrier-protein) reductase
    3.2e-07   27.8   0.0    5.6e-07   27.1   0.0    1.3  1  TIGR02415 23BDH: acetoin reductases
    1.7e-06   25.5   0.5    1.9e-05   22.0   0.1    2.2  2  TIGR03971 SDR_subfam_1: oxidoreductase, SDR family
    3.8e-06   24.2   0.1    7.3e-06   23.2   0.1    1.5  1  TIGR03325 BphB_TodD: cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase
    8.7e-06   23.1   0.4    1.5e-05   22.3   0.2    1.4  2  TIGR03206 benzo_BadH: 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase
  ------ inclusion threshold ------
      0.037   10.8   0.8      0.063   10.1   0.6    1.3  1  TIGR02824 quinone_pig3: putative NAD(P)H quinone oxidoreductase, PIG3 family
      0.042   11.1   0.1      0.062   10.5   0.0    1.2  1  TIGR01500 sepiapter_red: sepiapterin reductase


Domain annotation for each model (and alignments):
>> TIGR01289  LPOR: light-dependent protochlorophyllide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.0   0.3   6.6e-29   2.1e-26       5     231 ..     118     326 ..     114     404 .. 0.75

  Alignments for each domain:
  == domain 1    score: 91.0 bits;  conditional E-value: 6.6e-29
   TIGR01289   5 tviitgassglglaaakalvekgkwhvvmacrdlekaekaaksl....glpkdsytilkldlasldsvrkfveqfresgrsldalvcnaavylpllkeplfsadgyelsvatnhlghfllsnllledlkksdekdkrliilgsvtanskelagkvpikadlgdlsgleaglkaaniamidgkefkaakaykdsklcnmltvrelhrryhdetgivfaslypgcvadtglfr 231
                  v+itg+s+g+gl+aa  l+  g   vv+acr  ++a+ a + +      p++    + ld+a+l svr+f   f +   + dal+cna   lp+    + s++g+e  +atnhlghfll +lll  l++s     r++ + s                   d + l+a l +         ++   +ay  skl+ +  + elhrr   + g+   sl+pg  a t + r
  MMETSP1137-20121227|5297_1 118 VVVITGSSAGIGLEAATQLLTIG-ATVVFACRSAQRAKAAMETAlrvsSAPPQRAVFMSLDVANLVSVREFALAFAQRFTACDALICNAGCMLPTR---QLSPQGHEANLATNHLGHFLLVQLLLPLLRQSA---GRVVFVASSLHKGY----------SAADSHALAAALLNDPH---SRSDYALFRAYAKSKLAMVAGAIELHRRE-SKHGVLALSLHPGT-AYTEIAR 326
                 69*********************.99********99987655432222567888999*************************************97...589**************************9885...57777765433322..........23455566665544422...45566666899999999999999999985.56788888999996.5555555 PP

>> TIGR01963  PHB_DH: 3-hydroxybutyrate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.8   0.0   1.8e-16   5.7e-14       2     140 ..     117     256 ..     116     271 .. 0.82

  Alignments for each domain:
  == domain 1    score: 49.8 bits;  conditional E-value: 1.8e-16
   TIGR01963   2 kvalvtGaasGiglaiakelaaaGakvvvndleeeaaeaaakel....eeaggevlalkadvtkeeeiadlieavaaefgsldiLvnnAGiqhvapieefptekfekiiavnltsafhtiraalpimkkqgwGriiniasvhg 140
                 +v+++tG+++Gigl+ a++l   Ga+vv+   +++ a+aa +++    ++  ++++ +++dv++  ++++   a a++f++ d L+ nAG   + p  +  ++ +e+ +a n  + f +++  lp +++   Gr++ +as   
  MMETSP1137-20121227|5297_1 117 RVVVITGSSAGIGLEAATQLLTIGATVVFACRSAQRAKAAMETAlrvsSAPPQRAVFMSLDVANLVSVREFALAFAQRFTACDALICNAGC--MLPTRQLSPQGHEANLATNHLGHFLLVQLLLPLLRQ-SAGRVVFVASSLH 256
                 89**************************998885555544433311113445789999********************************7..56999***************************9985.68******98543 PP

>> TIGR02632  RhaD_aldol-ADH: rhamnulose-1-phosphate aldolase/alcohol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.0   0.1   8.3e-16   2.6e-13     404     566 ..     106     267 ..     102     288 .. 0.81

  Alignments for each domain:
  == domain 1    score: 47.0 bits;  conditional E-value: 8.3e-16
   TIGR02632 404 rrmPkekelarrvalvtGgasGiGrevarrlvdeGahvvladldaeaaeavaaelv..dkfGadkavalkldvtdeeavkaafaevalayGGvdivvnnaGiavskpleeteleeWdlnldilatGyflvareaarllrkqglggnlvfiask.navvakknalay 566
                 r    ++ +a+rv+++tG+++GiG e a +l   Ga vv a   a++a+a  +     +    ++av + ldv++  +v++   + a  +   d+++ naG +   p+ + + +  + nl+ +  G+fl+ +    llr+   +g +vf+as     ++  ++ a 
  MMETSP1137-20121227|5297_1 106 RSSSLPAAMAGRVVVITGSSAGIGLEAATQLLTIGATVVFACRSAQRAKAAMETALrvSSAPPQRAVFMSLDVANLVSVREFALAFAQRFTACDALICNAGCML--PTRQLSPQGHEANLATNHLGHFLLVQLLLPLLRQS--AGRVVFVASSlHKGYSAADSHAL 267
                 55667899*********************************99999988766554401344567888899***********9999****************986..67778888999999***********9999998864..68999999851333444444454 PP

>> TIGR01830  3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.8   0.0   2.8e-13   8.7e-11       1     135 [.     119     253 ..     119     263 .. 0.85
   2 ?    1.5   0.0      0.14        43     148     229 ..     287     371 ..     284     375 .. 0.81

  Alignments for each domain:
  == domain 1    score: 39.8 bits;  conditional E-value: 2.8e-13
   TIGR01830   1 alvtGasrgiGkaiakklakegakvviterskeekaeelaeelk..e.agvkaaavkldvsdeeevkelveeveeelgeidilvnnAGitrDklllrmkeedwdevikvnLkgvfnvtkavlkkmikkrsGriiniss 135
                 +++tG+s giG + a++l + ga+vv+  rs +++ ++++++l+  +   ++a+ ++ldv++  +v+e+  ++ +++   d l++nAG    +   +++ + +++ +++n  g f +++  l  ++++ +Gr++ ++s
  MMETSP1137-20121227|5297_1 119 VVITGSSAGIGLEAATQLLTIGATVVFACRSAQRAKAAMETALRvsSaPPQRAVFMSLDVANLVSVREFALAFAQRFTACDALICNAGCMLPTR--QLSPQGHEANLATNHLGHFLLVQLLL-PLLRQSAGRVVFVAS 253
                 68***********************998776665555555544411325688999*********************************987654..5678899999***********99765.68899******9998 PP

  == domain 2    score: 1.5 bits;  conditional E-value: 0.14
   TIGR01830 148 YaasKaGligltkslakElasrnitvnavaPGfietdmteklsekvkkkileqiplkr..lgkpeevaaavafLa.sdeasyitG 229
                 Ya sK  +++ +  l +  +++++ + ++ PG   t++ + ++  v+ +     pl r  + +++e a +++f a s ea  ++G
  MMETSP1137-20121227|5297_1 287 YAKSKLAMVAGAIELHRRESKHGVLALSLHPGTAYTEIARGMPLAVQWAQHVLQPLLRlwFQSASEAAYTITFAAaSPEACALAG 371
                 9999999999999999999*********************999988887777778877335788999999999751456655555 PP

>> TIGR01829  AcAcCoA_reduct: acetoacetyl-CoA reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.9   0.0   4.7e-09   1.5e-06       1     137 [.     117     253 ..     117     269 .. 0.85
   2 ?    4.3   0.0     0.019       5.9     150     232 ..     287     372 ..     284     377 .. 0.83

  Alignments for each domain:
  == domain 1    score: 25.9 bits;  conditional E-value: 4.7e-09
   TIGR01829   1 rvalvtGglgGiGtaickrlakdGykvvanvapneerakewlqekev...egfdvavvkadvssfeeakaavakveaelGpvdvlvnnaGitrdavfkkmtkeqWeevidtnlnsvfnvtrpviegmlergfGriiniss 137
                 rv ++tG++ GiG + +++l + G +vv ++++ + ++++++ + +v     +  ++++ dv++  + ++      +     d l+ naG       ++++ +  e+ ++tn  + f + + ++  +l ++ Gr++ ++s
  MMETSP1137-20121227|5297_1 117 RVVVITGSSAGIGLEAATQLLTIGATVVFACRSAQRAKAAMETALRVssaPPQRAVFMSLDVANLVSVREFALAFAQRFTACDALICNAGCMLP--TRQLSPQGHEANLATNHLGHFLLVQLLLP-LLRQSAGRVVFVAS 253
                 7999***************************9976666666665555100556788999*************9*****************9765..4899999999*******9*9999887766.56688999998866 PP

  == domain 2    score: 4.3 bits;  conditional E-value: 0.019
   TIGR01829 150 ysaakaGliGftkalaqegakkgvtvnviaPGyiatemvkavredvlkkivaqiPvkrl..gkpeeiaaavaflas.eeagyvtGa 232
                 y+ +k  ++  ++ l + ++k+gv    + PG   te+ + ++  v  +     P+ rl    + e a++++f a+  ea  ++Ga
  MMETSP1137-20121227|5297_1 287 YAKSKLAMVAGAIELHRRESKHGVLALSLHPGTAYTEIARGMPLAVQWAQHVLQPLLRLwfQSASEAAYTITFAAAsPEACALAGA 372
                 88999999999999******************************999887777799887446789999999998651466666666 PP

>> TIGR01832  kduD: 2-deoxy-D-gluconate 3-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.4   0.0   3.7e-10   1.2e-07       3     142 ..     114     255 ..     112     264 .. 0.84

  Alignments for each domain:
  == domain 1    score: 29.4 bits;  conditional E-value: 3.7e-10
   TIGR01832   3 leGkvalvtGantGlGqgiavglaeaGadivgvgise.....lsetqekveal.GrkflslkadladeeaakalvdeaveeagkidilvnnaGiirredavefsekdwddvlnvnlkavfllsqavakkllkqGrkgkiiniasll 142
                 ++G+v+++tG+++G+G   a  l + Ga +v + +s+     + et+ +v++   +++  +++d+a+  +++++   +++++   d l+ naG +    + ++s +  ++ l +n    fll q +   ll+q   g+++ +as l
  MMETSP1137-20121227|5297_1 114 MAGRVVVITGSSAGIGLEAATQLLTIGATVVFACRSAqrakaAMETALRVSSApPQRAVFMSLDVANLVSVREFALAFAQRFTACDALICNAGCMLP--TRQLSPQGHEANLATNHLGHFLLVQLLL-PLLRQS-AGRVVFVASSL 255
                 68*****************************88765411111568988887652688999*********************************9875..5678889999999999999999999875.566776.89999999876 PP

>> TIGR01831  fabG_rel: putative 3-oxoacyl-(acyl-carrier-protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.7   0.1   1.1e-09   3.4e-07       1     136 [.     119     253 ..     119     264 .. 0.85

  Alignments for each domain:
  == domain 1    score: 27.7 bits;  conditional E-value: 1.1e-09
   TIGR01831   1 vlvtgasrgigraialklaadgfeiavhyrsdradaeesvaair...aqggnarllkfdvadrvavrevleadiaehgayygvvlnagiardaafpalseedwdavietnldgfynvihplvmpmirarkggriitlas 136
                 v++tg+s gig   a++l + g  +   +rs + +  ++ +a+r   a    a ++++dva+ v+vre   a  ++  a   ++ nag    +    ls +  +a + tn  g + +++ l++p++r    gr++ +as
  MMETSP1137-20121227|5297_1 119 VVITGSSAGIGLEAATQLLTIGATVVFACRSAQRAKAAMETALRvssAPPQRAVFMSLDVANLVSVREFALAFAQRFTACDALICNAGCMLPT--RQLSPQGHEANLATNHLGHFLLVQ-LLLPLLRQ-SAGRVVFVAS 253
                 789***************************98776655555555111455678899*************999999*************98654..579999*********999998887.67999985.5689998887 PP

>> TIGR02415  23BDH: acetoin reductases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.1   0.0   1.8e-09   5.6e-07       1      89 [.     117     209 ..     117     225 .. 0.87

  Alignments for each domain:
  == domain 1    score: 27.1 bits;  conditional E-value: 1.8e-09
   TIGR02415   1 kvalvtGaaqGiGkaiaerLakdGfavavadln...eetaketakelkek.gtkavavkldvsdkseveeaveqaveklGeldvlvnnaGval 89 
                 +v ++tG++ GiG + a++L   G  v+ a       ++a+eta +++++  ++av+++ldv++  +v e     ++++   d l+ naG  l
  MMETSP1137-20121227|5297_1 117 RVVVITGSSAGIGLEAATQLLTIGATVVFACRSaqrAKAAMETALRVSSApPQRAVFMSLDVANLVSVREFALAFAQRFTACDALICNAGCML 209
                 6889***********************998765345677889999998763689****************999999**************764 PP

>> TIGR03971  SDR_subfam_1: oxidoreductase, SDR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.0   0.1   6.2e-08   1.9e-05       2     154 ..     115     254 ..     114     271 .. 0.83
   2 ?    1.5   0.0      0.12        37     166     204 ..     287     325 ..     280     375 .. 0.77

  Alignments for each domain:
  == domain 1    score: 22.0 bits;  conditional E-value: 6.2e-08
   TIGR03971   2 eGkvalitGaarGqGraeavrlaaeGadiiaidlceplsdvvtypaatredldetaklvealGrkvlarkadvrkleelravveegveefGrldvvvanaGvlsygrafelseeqWdtvldvnlkGvWktvkavvPalierknGGsiiivssv 154
                 +G+v +itG++ G G  +a +l + Ga ++    c++ +        +++ ++++ ++  a  ++++    dv +l  +r+      ++f   d ++ naG +   ++ +ls++  +  l +n  G +  v+  +P l  +   G ++ v+s+
  MMETSP1137-20121227|5297_1 115 AGRVVVITGSSAGIGLEAATQLLTIGATVVF--ACRSAQ-------RAKAAMETALRVSSAPPQRAVFMSLDVANLVSVREFALAFAQRFTACDALICNAGCML--PTRQLSPQGHEANLATNHLGHFLLVQLLLPLLR-QS-AGRVVFVASS 254
                 7**************************9875..466663.......3567888889999999***************************************986..55689*************************764.44.4555555554 PP

  == domain 2    score: 1.5 bits;  conditional E-value: 0.12
   TIGR03971 166 yaaakhGlvgltktlanelaeygirvnsihPtsvdtami 204
                 ya +k  +v+ +  l +  +++g+   s+hP +  t++ 
  MMETSP1137-20121227|5297_1 287 YAKSKLAMVAGAIELHRRESKHGVLALSLHPGTAYTEIA 325
                 888888888888888888888888888888888877765 PP

>> TIGR03325  BphB_TodD: cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.2   0.1   2.3e-08   7.3e-06       4     143 ..     115     254 ..     112     271 .. 0.81

  Alignments for each domain:
  == domain 1    score: 23.2 bits;  conditional E-value: 2.3e-08
   TIGR03325   4 kdevvlvtggasglgralvdrfvaegarvavldksaaglee.......leaahgdkvvgvegdvrllddhkeavarcveafgkldtlipnagiwdystalvdipddrid.eafdevfeinvkgyllavkaalpalvasrgsviftvsn 143
                  ++vv++tg ++g+g     + ++ ga v    +sa++ ++       + +a +++ v ++ dv  l + +e +    + f   d+li nag           p  +++ +  +     n  g++l v+  lp l +s g v+f  s 
  MMETSP1137-20121227|5297_1 115 AGRVVVITGSSAGIGLEAATQLLTIGATVVFACRSAQRAKAametalrVSSAPPQRAVFMSLDVANLVSVREFALAFAQRFTACDALICNAGCML--------PTRQLSpQGHEANLATNHLGHFLLVQLLLPLLRQSAGRVVFVASS 254
                 689***************************9999998865321122224567899*************************************864........4444441345556788999**********************9885 PP

>> TIGR03206  benzo_BadH: 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.3   0.2   4.9e-08   1.5e-05       3     148 ..     116     262 ..     114     272 .. 0.82
   2 ?   -4.0   0.0       5.1   1.6e+03     152     185 ..     287     320 ..     281     324 .. 0.76

  Alignments for each domain:
  == domain 1    score: 22.3 bits;  conditional E-value: 4.9e-08
   TIGR03206   3 dkvaivtgggggiggaicrrfaeegakvavldln...aeaaekvaaairekg.gkaeavavditdrasvdaavaaaeealgpvdvlvnnagwdvlkpflktekaewerliainltgalymhhavlkgmverkagrivniasdaarvgssg 148
                 ++v+++tg + gig     ++   ga v     +   a+aa + a ++ ++   +a  ++ d+++  sv     a  + +   d l+ nag   + p  +  +   e  +a n  g + +   +l+ ++ + agr+v +as   ++ s+ 
  MMETSP1137-20121227|5297_1 116 GRVVVITGSSAGIGLEAATQLLTIGATVVFACRSaqrAKAAMETALRVSSAPpQRAVFMSLDVANLVSVREFALAFAQRFTACDALICNAGC--MLPTRQLSPQGHEANLATNHLGHFLLVQLLLP-LLRQSAGRVVFVASSLHKGYSAA 262
                 689***********************99665544111456667777777665156788899********9998899999************6..667888889999999*******9988887776.78899*********988877765 PP

  == domain 2    score: -4.0 bits;  conditional E-value: 5.1
   TIGR03206 152 yaackgglvafsktlarelarhgitvnvvcpgpt 185
                 ya  k  +va +  l r  ++hg+    + pg +
  MMETSP1137-20121227|5297_1 287 YAKSKLAMVAGAIELHRRESKHGVLALSLHPGTA 320
                 7778888888888888888888887777777765 PP

>> TIGR02824  quinone_pig3: putative NAD(P)H quinone oxidoreductase, PIG3 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.6    0.0002     0.063     138     181 ..     114     157 ..     102     164 .. 0.87

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 0.0002
   TIGR02824 138 kagetvLihggasGiGttaiqlakalgakvlvtagsdekleaae 181
                  ag  v+i g+++GiG  a +    +ga+v+ +++s+++++aa 
  MMETSP1137-20121227|5297_1 114 MAGRVVVITGSSAGIGLEAATQLLTIGATVVFACRSAQRAKAAM 157
                 5799************998888889*************998754 PP

>> TIGR01500  sepiapter_red: sepiapterin reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0    0.0002     0.062       2      74 ..     118     188 ..     117     210 .. 0.79

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 0.0002
   TIGR01500   2 lllvtGasrGfGrelaqelakrlkaegsvlvLlaRndeaLkeska.eie.aevsalsvdlvsldleaakdvedll 74 
                 ++++tG+s G+G e a +l       g ++v   R+ +  k + +  +  +  + ++ + +sld+ +   v ++ 
  MMETSP1137-20121227|5297_1 118 VVVITGSSAGIGLEAATQLLT----IGATVVFACRSAQRAKAAMEtALRvSSAPPQRAVFMSLDVANLVSVREFA 188
                 689**************9988....68888888888877765544144456688899999999999988887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (420 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       213  (0.0519259); expected 82.0 (0.02)
Passed bias filter:                      122  (0.0297416); expected 82.0 (0.02)
Passed Vit filter:                        23  (0.00560702); expected 4.1 (0.001)
Passed Fwd filter:                        13  (0.00316919); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.40u 0.10s 00:00:00.50 Elapsed: 00:00:00.70
# Mc/sec: 791.93
//
Query:       MMETSP1137-20121227|5298_1  [L=714]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (714 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       162  (0.0394929); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.14s 00:00:00.59 Elapsed: 00:00:00.55
# Mc/sec: 1713.46
//
Query:       MMETSP1137-20121227|5299_1  [L=379]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (379 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        53  (0.0129205); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.14s 00:00:00.40 Elapsed: 00:00:00.35
# Mc/sec: 1429.25
//
Query:       MMETSP1137-20121227|5300_1  [L=400]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (400 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       117  (0.0285227); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.18s 00:00:00.48 Elapsed: 00:00:00.43
# Mc/sec: 1227.81
//
Query:       MMETSP1137-20121227|5301_1  [L=284]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.6e-15   51.8   0.0    8.4e-15   51.5   0.0    1.1  1  TIGR03903 TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
    3.9e-06   24.3   0.0    5.8e-06   23.7   0.0    1.1  1  TIGR03724 arch_bud32: Kae1-associated kinase Bud32


Domain annotation for each model (and alignments):
>> TIGR03903  TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.5   0.0   4.1e-18   8.4e-15      76     203 ..      25     142 ..       3     151 .. 0.85

  Alignments for each domain:
  == domain 1    score: 51.5 bits;  conditional E-value: 4.1e-18
   TIGR03903  76 LpaaetgrLmlqvLDalaaahdaGvvhRDLkPqnimvsaadveshakvLDFGigaLlpgvedadeatltrttevlGsPaYaaPeqLRgepvtaksDlYaWGLivleCLtGkrvvqGasvaevlykqLs 203
                 +++a  +r  lqv  ++a  h++ ++hRDLk  ni+++aa++    ++ DFG++   p  +      lt++t   Gs  + aPe LR ep     D++++G++  e Lt  +  +  +  +vl ++Ls
  MMETSP1137-20121227|5301_1  25 IATAVLVRQALQVASGMAYLHSQNIMHRDLKSPNILLTAAGDL---RISDFGLAKYAPTEKS----LLTAET---GSYRWMAPEVLRHEPYDRSCDVFSFGMLCWEMLTYSMPFEKLTPVQVLLRRLS 142
                 444445566789999*************************987...588*****99997666....677765...9***********************************99999999999999998 PP

>> TIGR03724  arch_bud32: Kae1-associated kinase Bud32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.7   0.0   2.8e-09   5.8e-06      98     140 ..      36      79 ..      21      86 .. 0.86

  Alignments for each domain:
  == domain 1    score: 23.7 bits;  conditional E-value: 2.8e-09
   TIGR03724  98 evGelvgklHkagivhgDlttsNiivk.ddklyliDfGLgkksk 140
                 +v+  ++ lH+++i+h Dl   Ni+++ +++l + DfGL+k+  
  MMETSP1137-20121227|5301_1  36 QVASGMAYLHSQNIMHRDLKSPNILLTaAGDLRISDFGLAKYAP 79 
                 6788899******************9548999********9964 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (284 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        52  (0.0126767); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.26u 0.14s 00:00:00.40 Elapsed: 00:00:00.34
# Mc/sec: 1102.50
//
Query:       MMETSP1137-20121227|5302_1  [L=199]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.3e-15   53.5   2.4    8.7e-15   52.6   1.7    1.5  1  TIGR01030 rpmH_bact: ribosomal protein L34


Domain annotation for each model (and alignments):
>> TIGR01030  rpmH_bact: ribosomal protein L34
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.6   1.7   2.1e-18   8.7e-15       4      44 .]     158     198 ..     157     198 .. 0.98

  Alignments for each domain:
  == domain 1    score: 52.6 bits;  conditional E-value: 2.1e-18
   TIGR01030   4 TyqPsnlkrkrthGFraRMaTknGRkvlkrRRaKgRkkLtv 44 
                 TyqP +lkrkrthGF+ R     GRk+l+rRRa gR+k++v
  MMETSP1137-20121227|5302_1 158 TYQPNVLKRKRTHGFLKRNSHPSGRKILARRRAIGRHKIAV 198
                 9*************************************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (199 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        54  (0.0131643); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.19u 0.16s 00:00:00.35 Elapsed: 00:00:00.28
# Mc/sec: 938.07
//
Query:       MMETSP1137-20121227|5303_1  [L=375]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (375 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        62  (0.0151146); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.17s 00:00:00.43 Elapsed: 00:00:00.44
# Mc/sec: 1124.91
//
Query:       MMETSP1137-20121227|5304_1  [L=554]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (554 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       110  (0.0268162); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.16s 00:00:00.59 Elapsed: 00:00:00.55
# Mc/sec: 1329.49
//
Query:       MMETSP1137-20121227|5305_1  [L=94]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (94 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        84  (0.0204778); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.34
# Mc/sec: 364.91
//
Query:       MMETSP1137-20121227|5306_1  [L=185]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (185 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        35  (0.00853242); expected 82.0 (0.02)
Passed bias filter:                       35  (0.00853242); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.15s 00:00:00.34 Elapsed: 00:00:00.30
# Mc/sec: 813.93
//
Query:       MMETSP1137-20121227|5309_1  [L=306]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (306 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        95  (0.0231594); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.16s 00:00:00.40 Elapsed: 00:00:00.52
# Mc/sec: 776.71
//
Query:       MMETSP1137-20121227|5310_1  [L=256]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (256 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        70  (0.0170648); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.15s 00:00:00.38 Elapsed: 00:00:00.33
# Mc/sec: 1023.92
//
Query:       MMETSP1137-20121227|5311_1  [L=532]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (532 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       410  (0.0999512); expected 82.0 (0.02)
Passed bias filter:                      110  (0.0268162); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.18s 00:00:00.61 Elapsed: 00:00:00.64
# Mc/sec: 1097.16
//
Query:       MMETSP1137-20121227|5312_1  [L=496]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     4e-166  550.7   1.4   5.1e-166  550.3   1.0    1.1  1  TIGR01060 eno: phosphopyruvate hydratase
    2.7e-06   24.5   0.0    5.2e-06   23.5   0.0    1.4  1  TIGR01928 menC_lowGC/arch: o-succinylbenzoate synthase
    0.00054   16.9   0.0      0.001   16.0   0.0    1.4  1  TIGR02534 mucon_cyclo: muconate and chloromuconate cycloisomerases


Domain annotation for each model (and alignments):
>> TIGR01060  eno: phosphopyruvate hydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  550.3   1.0  3.7e-169  5.1e-166       3     421 ..      55     490 ..      53     493 .. 0.95

  Alignments for each domain:
  == domain 1    score: 550.3 bits;  conditional E-value: 3.7e-169
   TIGR01060   3 dvearevldsrGnPtveveviledgtvgraivPsGastGekealelrdkdkkrylgkGvlkavenvneviapeliGldaldqaeidqili.eldgten.....ksklGanailavslavakaaakalelplyrylggvn.....alvlPvPllniinGGahadnkldlqefmivPvgaeslkealrlgaevfhalkkllkekg..latavGdeGGfaPnlksneealeilveaiekagykpgedvalaldvaasefydeekkkyvlkgeek......sltseelie.yleelvekypivsiedglseedwegfaeltkelGdkvqlvGddlfvtnaellkkGiekgvanailiklnqiGtltetleavklakkagytavishrsGetedttiadlavalnagqiktGslsrseriakynqLlrieeelgeeakyagkka 421
                   +ar+++dsrGnPtvev+  +++g++ ra+vPsGastG  ealelrd++k  y+gkGv kav+n+ne+i p+l+G+d ++q+eid +++ eldg++n     k+klGanailavs+av+ka a+a ++p+y+++++        + lPvP  niinGG+ha nkl +qefmi Pvga+s++ea+++g+ev+h+lk  +k+k    a +vGdeGGfaPn+ +++e l+++v aie agy  +  v++ +dvaasef++ e+++y l+ +++       +t +el++ +++ +v+ yp+vsied+++++d+e+   +t e+G k+q+vGddl vtn+ ++kk ie++++na+l+k+nqiGt+te++eav +ak ag+ ++ shrsGetedt+iadlav+l++gqiktG+  rser+akynqLlrieee g++a y+g++ 
  MMETSP1137-20121227|5312_1  55 GAKARQIFDSRGNPTVEVDLFTTKGSY-RAAVPSGASTGVYEALELRDGNKADYMGKGVSKAVSNINEIIGPALVGMDPTKQKEIDDKMVqELDGSKNdwgwsKAKLGANAILAVSMAVCKAGAAARDMPIYKHIAELAgnatdKFYLPVPAFNIINGGSHAGNKLAMQEFMILPVGASSFTEAMKMGSEVYHHLKLGIKKKYgqDACNVGDEGGFAPNIVEATEGLDLIVGAIEAAGY--TGKVKIGMDVAASEFWKAEEQVYDLNFKTEdxdksmYKTGKELLDhVYKAFVDDYPMVSIEDPFDQDDFESCGRMTAEVGAKCQIVGDDLLVTNPTRVKKAIESNACNALLLKVNQIGTVTESIEAVGMAKAAGWGVMTSHRSGETEDTFIADLAVGLKTGQIKTGAPCRSERLAKYNQLLRIEEECGAAAIYTGENF 490
                 568**********************65.999******************************************************9877538****987777789******************************998776777899*************************************************999999766899*******************************..567999*****************998887777777767778887626999*************************************************************************************************************************************************875 PP

>> TIGR01928  menC_lowGC/arch: o-succinylbenzoate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.5   0.0   3.8e-09   5.2e-06     196     279 ..     344     430 ..     305     433 .. 0.90

  Alignments for each domain:
  == domain 1    score: 23.5 bits;  conditional E-value: 3.8e-09
   TIGR01928 196 LdrydllyiEePfkadDlselkelkkel..ltpiclDE.sitslddlrklielgavkviniKpgRlGGltealkviellkehgakvw 279
                 +d+y ++ iE+Pf+ dD  +  +++ e+  +  i  D+  +t+   ++k+ie +a++ + +K+  +G +te+  ++ ++k  g +v+
  MMETSP1137-20121227|5312_1 344 VDDYPMVSIEDPFDQDDFESCGRMTAEVgaKCQIVGDDlLVTNPTRVKKAIESNACNALLLKVNQIGTVTESIEAVGMAKAAGWGVM 430
                 699*********************9997334455555527999************************************99888775 PP

>> TIGR02534  mucon_cyclo: muconate and chloromuconate cycloisomerases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0   7.4e-07     0.001     217     291 ..     351     428 ..     336     454 .. 0.88

  Alignments for each domain:
  == domain 1    score: 16.0 bits;  conditional E-value: 7.4e-07
   TIGR02534 217 lieqPtaaedlealarltarl..evpimadea.vtgPedalelakksaadvialkiaksGGlleakevaaiakaagia 291
                  ie P  ++d e+  r+ta +  +  i+ d+  vt P    + ++ +a + + lk+++ G ++e+ e + +akaag  
  MMETSP1137-20121227|5312_1 351 SIEDPFDQDDFESCGRMTAEVgaKCQIVGDDLlVTNPTRVKKAIESNACNALLLKVNQIGTVTESIEAVGMAKAAGWG 428
                 69****************98633788999986267799999999*******************************965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (496 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       127  (0.0309605); expected 82.0 (0.02)
Passed bias filter:                       96  (0.0234032); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.36u 0.15s 00:00:00.51 Elapsed: 00:00:00.48
# Mc/sec: 1363.89
//
Query:       MMETSP1137-20121227|5313_1  [L=248]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.5e-12   43.4   0.0    1.1e-11   42.9   0.0    1.2  1  TIGR00004 TIGR00004: putative endoribonuclease L-PSP
    3.5e-10   37.9   0.0    5.4e-10   37.3   0.0    1.2  1  TIGR03610 RutC: pyrimidine utilization protein C


Domain annotation for each model (and alignments):
>> TIGR00004  TIGR00004: putative endoribonuclease L-PSP
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.9   0.0   5.3e-15   1.1e-11      17     123 ..     115     216 ..      96     218 .. 0.88

  Alignments for each domain:
  == domain 1    score: 42.9 bits;  conditional E-value: 5.3e-15
   TIGR00004  17 sqavkvgnllfvsGqipldpetgelveegdveeqaeqvlenlkaileaaglsledvvkvtvflkdln.dFaevnevyakyfk.eekpaRsavevaaLPkdvkvEieaia 123
                 s+ v  g ++++sGq + ++         d + q++ vl+ ++++ ++ag++ ++++ ++++lkd+n dF+++n+v+  +++ ++kp R++v+         vE+++ia
  MMETSP1137-20121227|5313_1 115 SKLVLHGTTVYMSGQTAAEAGD-------DATLQTQAVLDKVEQLXTEAGSDKSKLLSASIWLKDINrDFKAMNAVWCAWIDpDNKPVRATVQAEMARPSILVEVQVIA 216
                 5567788999999998766544.......45668999*****************************868*************99*********9988889999*99998 PP

>> TIGR03610  RutC: pyrimidine utilization protein C
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.3   0.0   2.6e-13   5.4e-10      44     124 ..     134     216 ..     112     218 .. 0.87

  Alignments for each domain:
  == domain 1    score: 37.3 bits;  conditional E-value: 2.6e-13
   TIGR03610  44 hvgdaaaqtrhvletikkvvetaggtlddvtfnsiflkdw.adyaainevyaeyf.pgekparyciqvglvkpdalveiasva 124
                   +da+ qt+ vl+ ++++   ag   + +   si lkd  +d++a+n+v++ ++ p++kp r  +q+ + +p  lve+  +a
  MMETSP1137-20121227|5313_1 134 AGDDATLQTQAVLDKVEQLXTEAGSDKSKLLSASIWLKDInRDFKAMNAVWCAWIdPDNKPVRATVQAEMARPSILVEVQVIA 216
                 4589***********************************7369********99875899********************9998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (248 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        86  (0.0209654); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.21u 0.14s 00:00:00.35 Elapsed: 00:00:00.44
# Mc/sec: 743.94
//
Query:       MMETSP1137-20121227|5314_1  [L=320]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (320 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        53  (0.0129205); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.14s 00:00:00.40 Elapsed: 00:00:00.32
# Mc/sec: 1319.89
//
Query:       MMETSP1137-20121227|5315_1  [L=1391]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
          0 1667.7   0.0          0 1667.5   0.0    1.0  1  TIGR02025 BchH: magnesium chelatase, H subunit
   3.9e-187  622.3   0.0     5e-187  622.0   0.0    1.1  1  TIGR02257 cobalto_cobN: cobaltochelatase, CobN subunit


Domain annotation for each model (and alignments):
>> TIGR02025  BchH: magnesium chelatase, H subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ! 1667.5   0.0         0         0       2    1271 .]      87    1391 .]      86    1391 .] 0.97

  Alignments for each domain:
  == domain 1    score: 1667.5 bits;  conditional E-value: 0
   TIGR02025    2 rvvlvvleeqlnaalsraaaelnreld.laadleivaleelkekekleevekaikeadllfvsllfledqvrklkevlseer.qvkavvvvesapelmkltklGsfala.kseeksgilkllkkladlvkkeeedklaaqlkllktvpkllkfiPgekaqDlrnyllvyqyWlngskenlanlllllvdkYlaselg......vkveapveypdiglyHPdakklfetekeykewkkkre....gvkaekagrvgllllRkhllaenkahidnlirelEakglqvvpafakGldfrkaveeflmkdsteakkvDavvsltgFsLvGGPAesdeaaakeiLkkldvPylvaiPllfqtieeWkaselGlaplqvalsvaiPElDGaiepvilgglegeagkviaveerlealaervkrlvrLRkksnaekkvaivvfsfPPdkGnvgtAAyLdvfesllellkklkdeGYdveelPesveeLieavledeeeqlksadenvaarieveqkekltpelerieeqWgkapGellkdgdellilGaqlGnvfigvqPslGyegDPmrLlferdaaPhhafaafYrwldkefkAdAllHfGtHGslEfmPGkqvGlsgecwpdrLlgdlPnlYlYavnnPsEatiAkRRglatlvsylvPPlerAGLYkelreLkeliaeyrekkee.egaeileaiikkaeeleLdkdvpeik.........qeqaeefvkrlyiklleleerliplgLhvlGeapsaeelvdtlvelvsldre...ersLpelvletlgknleeie.......leeieslekvteaaavavkrlveealeelergsfaekle.........keelekvlaksklpeldkekldrlleeleailkllledeElegllkaLeGeyippaPGgDlvRdpevlPtGrniHalDPyriPseaAvkagkrvadkllekkraeesgeyPEsiAvvlWGtDniktkGesvaqvlallGaepvkdelGriakveLiPLeklGrPRiDvvvtlsgiFRDllsnqielLdeavklAAeAdEPeemnfvrkHalaqaeelgidveeAaaRvfsnapGsygsnvndlvedsaWeeeeeLadtfikRksfaygkeekg..ekkpeilqslLktvdlvfqnvDsvElgltdidhYyeslggvskaverakgkkatavyvedttkkakakvreleelvrleaRtklLnPkWyegmlehGyeGvreiskrltntlGWsataeavddWvYdqltetyilDeemrerlaelnpealrkivsrllEasgRglWeadeeklekLqelyeeledrlEGv 1271
                  +vv+vvle+q++a+l+ a + +n  ++ +a + + + leel+++ ++e+++k++ ea+++++sl+f+++ ++k++ +++ +r +++av+v+ s+p++m+++k+Gsf +a  +++k+ + +++kk++     ++++ ++++lkl++t+pk+lk++Pg+ka+D+r++++++qyWl+gs+en+++lll l+ +Y+   ++      + v +p ++pd g++HP a+k+fet +ey +w ++ +    g+  ++a++vg++l+++h+ ++++ah+++ i elE++g+ v+p++++ ldf++ ++e++  +++    vD v++ltgF+LvGGPA++d+++a+  L+kld+Pyl+a+P +fqt+eeWk+selGl+p+qval+va+PElDGaiep+i++g++g +g+ i+  +r+e la+r+ ++++LR+k+ ++kkvai+vfsfPPdkGnvgtAAyL+vf s++e lk++k+eGY+v+elPesve+L++ vl+++e+ l s ++nv+ +++v+++++ltp+ +++ee+Wg +pG+l++dg +ll++G+++GnvfigvqPs+GyegDPmrLl++++a+Phh+faa+Y++++k f AdA+lHfGtHGslEfmPGkqvG+sg c+pdrL+   PnlY+Ya+nnPsEatiAkRR++a ++syl+PP+e+AGLYk+l+eL el+++y+  +e+ +g +i++ i++ a++++Ldkdv+ +           eq++ +v+r+y k++e+e+rl+p+gLh +G +p+a e+v+tlv+++s dr+   ++sLp +++e++g+++e+i+       le+    +++++a+++av++ v++ ++++ r++ ++ l           +++++ la+   + + ++ + +l+++le++lk++++d+E+ +ll +L+G++i+p+PGgD++R+p vlPtG+n+HalDP++iP+ aA+  +k v+d+lle++ a+++g+yPEsiA vlWGtDnikt+Ges+aqvl+++G++p +d+lGr++++e iPLe+lGrPRiDvvvt+sg+FRDl++nq++lLd+avkl Ae dEP+emnfvrkHal+qaee+g+++++Aa+Rvfsna+Gsy++nv  ++e++ We e++L+d f+ Rk+fa++ ++ g  +++++i++s Lk vd +fqn+Ds+E++ltd++hY++s++++  a  r++g k+++++v+dtt +a+a+vr+l+e+vrl+aRtklLnPk+yegml+ GyeG rei krl nt+GWsata+avd++vY+++++t+i Deemr+rl + np+a+r++v+++lEa+gRg+We++ee+l++L++ly+e++d++EGv
  MMETSP1137-20121227|5315_1   87 KVVYVVLESQYQASLTTACKRINAGQPgVAVECSGYILEELRDEANYEQFKKDVAEANIFIGSLIFVQELADKVVAAVEPNRdNLDAVCVFPSMPAVMRMNKIGSFTMAsMGQSKNVMVDFMKKNKP----SGTSFQDGMLKLVRTLPKVLKYLPGDKAKDARSFMMSLQYWLGGSPENIEALLLNLASNYVPEVMEkgmlneMPVLEPEVIPDRGIWHPVASKVFETPAEYMQWLREEHapsvGIDVDTAPVVGIVLQKSHINTKDDAHYVSFIMELESRGALVLPTYTGALDFSVCIDEYFFLNGKT--LVDSVINLTGFALVGGPATQDHPKAVATLQKLDRPYLCAVPATFQTFEEWKDSELGLHPVQVALQVALPELDGAIEPIIYAGRDGVTGRSIPQADRIEVLARRALKWASLRRKEVKDKKVAITVFSFPPDKGNVGTAAYLNVFGSIFECLKAMKAEGYEVGELPESVEDLVDEVLHEKEARLASPQLNVEYKMSVSEYKELTPYASELEENWGPPPGQLNSDGANLLVYGKRFGNVFIGVQPSFGYEGDPMRLLYAKSASPHHGFAAYYTYVEKVFGADAVLHFGTHGSLEFMPGKQVGMSGGCYPDRLIQSTPNLYYYAANNPSEATIAKRRSYANTISYLTPPAENAGLYKGLKELGELVGSYQGLRESgRGSTIVNSIVATARQCNLDKDVDLPGeeddtaeltLEQRDRVVGRVYSKIMEIESRLLPCGLHTVGVPPTAMEAVATLVNIASIDRPeesIKSLPRSIAEAIGRDIEQIYrnsdngvLEDATLRQNIVTATRAAVQACVDRSTDANGRVTEVKSLFdnmadmfmgGSPMKRALADN-GFTVSDDAIAPLFKYLEFCLKQVVADNEMGALLDGLNGKFITPGPGGDPIRNPLVLPTGKNMHALDPQAIPTIAACDCAKIVVDRLLERQAADNDGAYPESIAFVLWGTDNIKTYGESLAQVLWMVGVRPLPDSLGRVNQIEAIPLEELGRPRIDVVVTCSGVFRDLFINQMNLLDRAVKLVAELDEPLEMNFVRKHALEQAEEMGVSLRDAATRVFSNAAGSYSANVGLAIENGGWEGEDQLQDQFLARKGFAFNADKPGvlDAAEDIFKSSLKRVDVTFQNLDSSEISLTDVSHYFDSDPTKVVAGLRTDG-KKPTSFVADTT-TANAQVRTLSETVRLDARTKLLNPKFYEGMLKSGYEGTREITKRLRNTMGWSATAGAVDNFVYEDANDTFIADEEMRQRLLDTNPNAFRDMVTTFLEANGRGYWETSEENLDRLRQLYAEVDDKIEGV 1391
                  89**********************76626789*************************************************99**************************889999999****99877....999**********************************************************9876666655444445667899*********************988777999999**********************************************************9998..9*********************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************88***********************998888888888899************************************************999999************************99999999*********************9999955544435778887767778888877.68899999************************************************************************************************************************************************************************************************************************************************************99899************************************************.99*********.9999***************************************************************************************************************************8 PP

>> TIGR02257  cobalto_cobN: cobaltochelatase, CobN subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  622.0   0.0  2.5e-190    5e-187     162    1225 ..     282    1385 ..     220    1386 .. 0.86

  Alignments for each domain:
  == domain 1    score: 622.0 bits;  conditional E-value: 2.5e-190
   TIGR02257  162 ltkdeavveakaikkagladPlrgeikkek.....................lakvGilfYralllagdtaliealidaLrqrglrplpvfvssLkdkevlaevldllkeekvevvltttaFas....skeeadegetlldsldvPvlqvlvsn.ksreeWedssrGleprDLalqvvlPelDgRiltravsFkevsevdekleskvvaykpdedrikfvadlaanwiklqrkekaerkialvlanYPvrdGRigngvGLdtPasvvellkalkeeGYdlgekplPkngdaLiklllkgrtnslesedrepleklsldeylkffeklpkkakeeivarwgepsqdpdledkkgfaiaglrfGnivvliqPdRGydadkkadyhsPdLaPphrylafylwlrkvfgadalvhvGkhGtleWLPGksvaLseeCfPeivlgplPhiYPFivndPGegaqakRRtqavildhLtPPLtraelygklkkLeelvdeyyeaklldsrRlevlekqilelvkdedldeeisvke..sdkldsilekld.......ayLCdLkesqirdGLhifGrapegrkltdlllalarv..PtskkkGltralardlgle.............ld.Plaadegeslseadkailadlskaklrtlgdtlealeeqaaslvekllrkeqakdeaaaire.....vlekikeellpsilk.steaekasllkaleGryvaaGpsGaPsRGrsdvLPtGrnfysvDlRalPteaawdlgkksaeelierylqe.hGealrklalsvWgtatmRtGGediaqaLallGvrPvWdaasrrvvdleviPlslLgRPRvDvtlRisGlFRDaFpnlialvdkavqavaeldedeelnplaarvraee........kassRifGskPgaYGaglqelieekaWeekedlaeaylkwssyaYgageegi..aarealeerlkkiqvvlhnqDnrehDlLdsddyyqFqGGlsaaveklsGkrpeiyfgDhsrkekpkirkleeeldrvvRaRvvnpkwieGmkrhGykGafelaatvDylfaydatteavsdwlyeaiadaylldeevkeFlieknPaalrdlaeRlleaanRelWqeakeeileelkklileae 1225
                  + ++ +v e++ i+  g+++P++ ++ ++                       + vGi++ ++++++ d a   ++i +L++rg   lp +  +L  + ++ e   l  ++ v+ v++ t+Fa     ++++ ++  + l++ld+P l  + ++ ++ eeW+ds+ Gl+p  +alqv+lPelDg i   + + ++ ++          +  p+ dri+ +a +a +w++l+rke +++k+a+ +  +P  +G +g +  L++  s+ e lka+k+eGY++ge  lP++ ++L++ +l+ ++  l+s + ++ +k+s+ ey+++   +     +e++++wg p  + + + + ++ + g rfGn+++++qP+ Gy+ d+ + +++    P h++ a+y +++kvfgada++h G hG+le++PGk v++s  C+P+ ++ + P++Y +  n+P e++ akRR+ a ++ +LtPP + a+ly++lk+L elv  y    l +s R +++ ++i++++++ +ld+++ +    +d+ + +le+ d       + + ++    +  GLh  G  p  ++ + +l+ +a    P+++ k l r++a+  g +              d  l ++   +   a +a++ d+s++   ++ +  +  +++a +++    +k +  d+  ++++     ++    + l   +++  + +e+ +ll +l+G+++++Gp G P R ++ vLPtG+n+++ D  a+Pt aa d +k   ++l+er   + +G  ++++a+ +Wgt +++t Ge +aq+L ++GvrP  d+   rv ++e iPl+ LgRPR+Dv++  sG+FRD F n+++l+d+av++vaelde+ e n + ++  ++          a +R+f  + g+Y a +  +ie++ We +++l + +l    +a++a + g+  aa++ ++ +lk+++v  +n D  e  l d + y+       +a  +  Gk+p+ ++ D++   ++++r+l+e +    R++++npk+ eGm + Gy G  e+++ +   +++ at++av++++ye + d++++dee+++ l++ nP a+rd+   +lea+ R+ W+ ++ e l++l++l +e++
  MMETSP1137-20121227|5315_1  282 MLNEMPVLEPEVIPDRGIWHPVASKVFETPaeymqwlreehapsvgidvdtAPVVGIVLQKSHINTKDDAHYVSFIMELESRGALVLPTYTGALDFSVCIDEYFFLNGKTLVDSVINLTGFALvggpATQDHPKAVATLQKLDRPYLCAVPATfQTFEEWKDSELGLHPVQVALQVALPELDGAIEPIIYAGRDGVT---------GRSIPQADRIEVLARRALKWASLRRKEVKDKKVAITVFSFPPDKGNVGTAAYLNVFGSIFECLKAMKAEGYEVGE--LPESVEDLVDEVLHEKEARLASPQLNVEYKMSVSEYKELTPYA-----SELEENWGPPPGQLNSD-GANLLVYGKRFGNVFIGVQPSFGYEGDPMRLLYAKSASPHHGFAAYYTYVEKVFGADAVLHFGTHGSLEFMPGKQVGMSGGCYPDRLIQSTPNLYYYAANNPSEATIAKRRSYANTISYLTPPAENAGLYKGLKELGELVGSYQG--LRESGRGSTIVNSIVATARQCNLDKDVDLPGeeDDTAELTLEQRDrvvgrvySKIMEIESRLLPCGLHTVGVPPTAMEAVATLVNIASIdrPEESIKSLPRSIAEAIGRDieqiyrnsdngvlEDaTLRQNIVTATRAAVQACV-DRSTDANGRVTEVKSLFDNMADMFMGGSPMKRALADNGFTVSDdaiapLF----KYLEFCLKQvVADNEMGALLDGLNGKFITPGPGGDPIR-NPLVLPTGKNMHALDPQAIPTIAACDCAKIVVDRLLERQAADnDGAYPESIAFVLWGTDNIKTYGESLAQVLWMVGVRPLPDSL-GRVNQIEAIPLEELGRPRIDVVVTCSGVFRDLFINQMNLLDRAVKLVAELDEPLEMNFVRKHALEQAeemgvslrDAATRVFSNAAGSYSANVGLAIENGGWEGEDQLQDQFLARKGFAFNADKPGVldAAEDIFKSSLKRVDVTFQNLDSSEISLTDVSHYFDSDPTKVVAGLRTDGKKPTSFVADTTTA-NAQVRTLSETVRLDARTKLLNPKFYEGMLKSGYEGTREITKRLRNTMGWSATAGAVDNFVYEDANDTFIADEEMRQRLLDTNPNAFRDMVTTFLEANGRGYWETSE-ENLDRLRQLYAEVD 1385
                  33455667888888888888888877776667788888888777777766677788******************************************************************9998878888899999*********99988736679*************************99765555544332.........2346999********************************************************************..************************************9986554.....568899***99986655.77********************************************************************************************************************************************986..55788999*****************9998653233444455555511111116677777777889*****************9999975338888899**********994444444444442121222233333223333333.33333333355666666666666665554444444433333325444444....44444444415789************************.688**********************************9876527************************************9975.79********************************************************998766555679****9999********************************************999982245688*********************************99999999************9875.689***************************************************************************************************9955.559******99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1391 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        91  (0.0221843); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.03u 0.20s 00:00:01.23 Elapsed: 00:00:00.81
# Mc/sec: 2266.63
//
Query:       MMETSP1137-20121227|5316_1  [L=167]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.1e-13   49.0   1.4    1.3e-13   48.8   0.9    1.1  1  TIGR00601 rad23: UV excision repair protein Rad23


Domain annotation for each model (and alignments):
>> TIGR00601  rad23: UV excision repair protein Rad23
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.8   0.9   3.1e-17   1.3e-13       1      72 [.       1      69 [.       1      97 [. 0.86

  Alignments for each domain:
  == domain 1    score: 48.8 bits;  conditional E-value: 3.1e-17
   TIGR00601  1 vkltlKtlkqqkfkidlepdetvkelKekiesekgkdayevaqqkLiyaGkiLsDdktvkeykikekdfvvv 72
                +++ +Ktl ++++++++ep++ + ++K ki++++g   ++ +qq+Li+aGk L+D +t+++y+i+ +  + +
  MMETSP1137-20121227|5316_1  1 MQIFVKTLTGKTITLEVEPSDSIDNVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHL 69
                8999*******************************...**************************98876544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (167 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       168  (0.0409556); expected 82.0 (0.02)
Passed bias filter:                      121  (0.0294978); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.19u 0.18s 00:00:00.37 Elapsed: 00:00:00.35
# Mc/sec: 629.78
//
Query:       MMETSP1137-20121227|5318_1  [L=267]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      2e-23   80.8   0.0    2.7e-23   80.4   0.0    1.1  1  TIGR00046 TIGR00046: RNA methyltransferase, RsmE family


Domain annotation for each model (and alignments):
>> TIGR00046  TIGR00046: RNA methyltransferase, RsmE family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.4   0.0   6.5e-27   2.7e-23      10     199 ..      70     261 ..      62     264 .. 0.83

  Alignments for each domain:
  == domain 1    score: 80.4 bits;  conditional E-value: 6.5e-27
   TIGR00046  10 qleeal.islteeevhHlvrvlRlkkgdklklldgdgeiykaelkkiskkkvkvklleaeseerelplkvhlaivlikgkklekiirklteLGvskiipllaersvvkldaeakkKlerwqkivieaaeQsgrnivpeikavknlk...eklaeaeeeal..klnlhleasalsknle.ie.akkiviiiGPEGGfse 199
                  l+  + isl+e + h+l  v+R   gd   l++g+  ++ a++  isk +v++ l  +   +  +++  +l+ +++kg +l   + k+teLGvs+++p+l   +  +  +       r q i+ eaaeQsgr  vp +  +  lk   +k  e ++     +++++  +  + +     e  ++ +++iGPEGGfs 
  MMETSP1137-20121227|5318_1  70 PLAASSlISLEESQRHYLFSVMRARAGDSVALFNGQDGEWLARISTISKSSVQLSLQSQLRPQ-RAEDGATLLFGVLKGARLPMLVEKATELGVSQLQPVLMQHCAARAVN-----VPRLQAIAVEAAEQSGRLTVPSMGNPLPLKaalQKWSELQPSRAlcVCDERGGSRLIGELAAsGEvEANSGVLIGPEGGFSS 261
                 4444556************************************************99998888.8889999999*********************************9999.....8*****************************6663344444444401445555555544444444446789**********95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (267 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       110  (0.0268162); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.25u 0.19s 00:00:00.44 Elapsed: 00:00:00.36
# Mc/sec: 978.92
//
Query:       MMETSP1137-20121227|5319_1  [L=640]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (640 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       352  (0.0858118); expected 82.0 (0.02)
Passed bias filter:                      137  (0.0333983); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.16s 00:00:00.61 Elapsed: 00:00:00.79
# Mc/sec: 1069.28
//
Query:       MMETSP1137-20121227|5320_1  [L=414]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.3e-12   45.6   0.0    2.4e-12   44.8   0.0    1.4  1  TIGR01068 thioredoxin: thioredoxin
    6.9e-07   25.3   3.6    3.9e-06   22.8   0.4    2.0  2  TIGR02917 PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein
    0.00041   16.5   0.4     0.0026   13.8   0.1    1.9  1  TIGR03939 PGA_TPR_OMP: poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA
  ------ inclusion threshold ------
      0.011   13.9   0.0      0.037   12.2   0.0    1.9  1  TIGR01126 pdi_dom: protein disulfide-isomerase domain


Domain annotation for each model (and alignments):
>> TIGR01068  thioredoxin: thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.8   0.0   2.3e-15   2.4e-12      16      99 ..     150     233 ..     139     235 .. 0.95

  Alignments for each domain:
  == domain 1    score: 44.8 bits;  conditional E-value: 2.3e-15
   TIGR01068  16 lvlvDfwAeWCgpCkmlaPvleelakeleekvkvvKlnvdeeqeiaakygirsiPtlllfkngkevkrvvGakpkaalkeliek 99 
                 +vl+D +A+WC p         e+ +  e++++  K +  +  eia++ +++s+Pt++l+++gk v++  G++p+a+l++++++
  MMETSP1137-20121227|5320_1 150 PVLLDLYADWCEPXPGAHAKAREARARGEGRAQARKGERRQAAEIAQALQVTSLPTVMLVHKGKLVDSFQGVLPDAELAKFVNR 233
                 89*************99999999999******************************************************9986 PP

>> TIGR02917  PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.3   0.2    0.0002       0.2     206     262 ..     250     306 ..     244     312 .. 0.91
   2 !   22.8   0.4   3.8e-09   3.9e-06     710     800 ..     285     375 ..     285     378 .. 0.94

  Alignments for each domain:
  == domain 1    score: 7.3 bits;  conditional E-value: 0.0002
   TIGR02917 206 sgnieeAlaayrkaielkpnaiaallalatilleegefeeAekkadallkkapnspk 262
                 sg+ + A+aay +  +l  +a+aa + la  +l+ g+++ A+  + +l kk+p+   
  MMETSP1137-20121227|5320_1 250 SGDVAGATAAYAELSALPEHAAAANAGLALCALKDGDLALAQDLIATLHKKFPEAIG 306
                 688999**********************************************98655 PP

  == domain 2    score: 22.8 bits;  conditional E-value: 3.8e-09
   TIGR02917 710 GdlalrqkdykaAiqaykkalkrapssqtvikLaeallasgntaeAaktleawLkehpkdavlrtalAelylaekdedkAakhYqtvvkka 800
                 Gdlal+q  ++   +++ +a+ + +    ++   e   a+gn    a+ le++Lke+p ++ +r+ lA++++a+ + + A+ ++ t++kk+
  MMETSP1137-20121227|5320_1 285 GDLALAQDLIATLHKKFPEAIGTDALVRKAVSKVELAAAAGNGTRPAAALEQMLKEDPSSHEVRYELAQSLMASDETERAVDELLTILKKE 375
                 7888888888888899999999999999999999*******************************************************97 PP

>> TIGR03939  PGA_TPR_OMP: poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.1   2.5e-06    0.0026     442     506 ..     250     314 ..     247     337 .. 0.88

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 2.5e-06
   TIGR03939 442 RgwprrAeqllkkaeslepdslsaergqaetaldlqewrqaealiddlvaryPedkqvqrLarrl 506
                  g    A  ++ ++++l++  + a++g+a +al+ ++ + a+ li +l +++Pe  ++++L r+ 
  MMETSP1137-20121227|5320_1 250 SGDVAGATAAYAELSALPEHAAAANAGLALCALKDGDLALAQDLIATLHKKFPEAIGTDALVRKA 314
                 566778999*************************************************9999874 PP

>> TIGR01126  pdi_dom: protein disulfide-isomerase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   3.6e-05     0.037      17     103 ..     151     233 ..     141     235 .. 0.75

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 3.6e-05
   TIGR01126  17 vlvefyaPWCGhCkklaP.eyeklakelkkeeekvkiakvdataekelaskfkvsgfPtlkffkkgkkepvdyeGeReaeelvefvee 103
                 vl++ ya WC       P  + k+ ++ ++ e + +  k +  +  e+a+ ++v++ Pt+++++kgk    +++G    +el++fv++
  MMETSP1137-20121227|5320_1 151 VLLDLYADWCEP----XPgAHAKAREARARGEGRAQARKGERRQAAEIAQALQVTSLPTVMLVHKGKL-VDSFQGVLPDAELAKFVNR 233
                 777888888743....330333333333344445666677778889999******************6.999*************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (414 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       164  (0.0399805); expected 82.0 (0.02)
Passed bias filter:                      120  (0.029254); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.40u 0.16s 00:00:00.56 Elapsed: 00:00:00.88
# Mc/sec: 620.95
//
Query:       MMETSP1137-20121227|5321_1  [L=446]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.4e-75  251.0   3.8    3.2e-74  248.4   2.6    1.8  1  TIGR00955 3a01204: pigment precursor permease
    1.3e-45  153.4   6.8    2.4e-31  106.1   0.1    2.5  2  TIGR00956 3a01205: pleiotropic drug resistance family protein
    8.1e-14   49.4   0.0    1.1e-13   49.0   0.0    1.1  1  TIGR01188 drrA: daunorubicin resistance ABC transporter, ATP-binding protein
    1.5e-12   45.4   0.0    2.4e-12   44.8   0.0    1.2  1  TIGR02673 FtsE: cell division ATP-binding protein FtsE
    3.7e-12   43.8   2.2    4.4e-12   43.5   0.0    2.0  2  TIGR02857 CydD: thiol reductant ABC exporter, CydD subunit
    3.9e-12   44.1   0.0    6.3e-12   43.4   0.0    1.2  1  TIGR02982 heterocyst_DevA: ABC exporter ATP-binding subunit, DevA family
    4.6e-12   43.6   0.0    8.4e-12   42.8   0.0    1.3  1  TIGR01166 cbiO: cobalt ABC transporter, ATP-binding protein
    6.8e-12   43.1   0.0      1e-11   42.5   0.0    1.2  1  TIGR02315 ABC_phnC: phosphonate ABC transporter, ATP-binding protein
    1.7e-11   41.8   0.0    2.9e-11   41.1   0.0    1.3  1  TIGR03864 PQQ_ABC_ATP: ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system
    2.2e-11   41.4   0.0    3.6e-11   40.8   0.0    1.2  1  TIGR03608 L_ocin_972_ABC: putative bacteriocin export ABC transporter, lactococcin 972 group
    1.3e-10   38.3   0.0      2e-10   37.6   0.0    1.3  1  TIGR01842 type_I_sec_PrtD: type I secretion system ATPase
    1.8e-10   38.4   0.0    3.1e-10   37.6   0.0    1.3  1  TIGR03873 F420-0_ABC_ATP: proposed F420-0 ABC transporter, ATP-binding protein
    3.6e-10   37.5   0.0    5.1e-10   37.0   0.0    1.2  1  TIGR01978 sufC: FeS assembly ATPase SufC
    4.9e-10   37.3   0.0    8.1e-10   36.6   0.0    1.3  1  TIGR00960 3a0501s02: type II secretory pathway family protein
    5.1e-10   36.6   0.0      8e-10   36.0   0.0    1.2  1  TIGR01288 nodI: nodulation ABC transporter NodI
    6.5e-10   36.7   0.0    1.1e-09   36.0   0.0    1.2  1  TIGR02211 LolD_lipo_ex: lipoprotein releasing system, ATP-binding protein
    8.2e-10   35.4   0.0    1.5e-09   34.5   0.0    1.4  1  TIGR03375 type_I_sec_LssB: type I secretion system ATPase
    2.2e-09   35.2   0.0    3.9e-09   34.4   0.0    1.3  1  TIGR03740 galliderm_ABC: lantibiotic protection ABC transporter, ATP-binding subunit
    2.2e-09   34.3   0.0    4.2e-09   33.4   0.0    1.5  1  TIGR02868 CydC: thiol reductant ABC exporter, CydC subunit
    3.8e-09   33.1   0.0    5.5e-09   32.6   0.0    1.1  1  TIGR03796 NHLM_micro_ABC1: NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein
    4.4e-09   34.0   0.0    8.8e-09   33.0   0.0    1.4  1  TIGR02324 CP_lyasePhnL: phosphonate C-P lyase system protein PhnL
    8.6e-09   32.9   0.0    1.5e-08   32.1   0.0    1.3  1  TIGR02142 modC_ABC: molybdate ABC transporter, ATP-binding protein
    1.4e-08   31.5   0.4    4.1e-08   30.0   0.0    1.7  2  TIGR03797 NHLM_micro_ABC2: NHLM bacteriocin system ABC transporter, ATP-binding protein
    2.4e-08   30.5   0.0    3.5e-08   30.0   0.0    1.2  1  TIGR00958 3a01208: antigen peptide transporter 2
      3e-08   31.5   0.0    4.5e-08   30.9   0.0    1.3  1  TIGR03771 anch_rpt_ABC: anchored repeat-type ABC transporter, ATP-binding subunit
    3.5e-08   30.9   0.0    5.9e-08   30.2   0.0    1.3  1  TIGR00972 3a0107s01c2: phosphate ABC transporter, ATP-binding protein
    6.7e-08   30.3   0.0    1.1e-07   29.6   0.0    1.2  1  TIGR01189 ccmA: heme ABC exporter, ATP-binding protein CcmA
    7.6e-08   29.9   0.0    1.2e-07   29.3   0.0    1.2  1  TIGR03410 urea_trans_UrtE: urea ABC transporter, ATP-binding protein UrtE
    7.6e-08   29.6   0.0    1.1e-07   29.0   0.0    1.1  1  TIGR03258 PhnT: 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT
      1e-07   28.4   0.0    1.6e-07   27.8   0.0    1.2  1  TIGR01846 type_I_sec_HlyB: type I secretion system ATPase
    1.8e-07   28.7   0.0    2.9e-07   28.0   0.0    1.2  1  TIGR02769 nickel_nikE: nickel import ATP-binding protein NikE
    2.5e-07   27.9   0.0    3.6e-07   27.4   0.0    1.1  1  TIGR01187 potA: polyamine ABC transporter, ATP-binding protein
    2.6e-07   27.5   0.0    3.9e-07   26.9   0.0    1.2  1  TIGR02204 MsbA_rel: ABC transporter, permease/ATP-binding protein
      3e-07   28.1   0.0    5.2e-07   27.3   0.0    1.3  1  TIGR01184 ntrCD: nitrate ABC transporter, ATP-binding proteins C and D
    5.3e-07   26.4   0.0    7.7e-07   25.8   0.0    1.1  1  TIGR03269 met_CoM_red_A2: methyl coenzyme M reductase system, component A2
    5.5e-07   26.2   0.0      8e-07   25.7   0.0    1.1  1  TIGR02633 xylG: D-xylose ABC transporter, ATP-binding protein
    6.7e-07   26.6   0.0      1e-06   26.0   0.0    1.2  1  TIGR03005 ectoine_ehuA: ectoine/hydroxyectoine ABC transporter, ATP-binding protein EhuA
    8.7e-07   26.4   0.0    1.3e-06   25.8   0.0    1.2  1  TIGR02770 nickel_nikD: nickel import ATP-binding protein NikD
    1.2e-06   25.2   0.0    1.7e-06   24.7   0.0    1.1  1  TIGR03719 ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family
    1.7e-06   25.6   0.0    3.3e-06   24.7   0.0    1.4  1  TIGR01277 thiQ: thiamine ABC transporter, ATP-binding protein
    3.5e-06   24.3   0.0      5e-06   23.8   0.0    1.1  1  TIGR03265 PhnT2: putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein
    3.8e-06   23.9   0.0    5.6e-06   23.4   0.0    1.1  1  TIGR02314 ABC_MetN: D-methionine ABC transporter, ATP-binding protein
    4.4e-06   24.2   0.1    1.3e-05   22.7   0.0    1.8  1  TIGR02323 CP_lyasePhnK: phosphonate C-P lyase system protein PhnK
    1.1e-05   22.0   0.0    1.7e-05   21.3   0.0    1.3  1  TIGR02203 MsbA_lipidA: lipid A export permease/ATP-binding protein MsbA
    1.3e-05   22.7   0.0      2e-05   22.0   0.0    1.2  1  TIGR00968 3a0106s01: sulfate ABC transporter, ATP-binding protein
    2.7e-05   19.0   0.0    2.7e-05   19.0   0.0    2.0  2  TIGR01257 rim_protein: rim ABC transporter
    0.00011   19.8   0.0    0.00016   19.3   0.0    1.2  1  TIGR03411 urea_trans_UrtD: urea ABC transporter, ATP-binding protein UrtD
    0.00021   17.8   0.0    0.00035   17.0   0.0    1.3  1  TIGR01193 bacteriocin_ABC: ABC-type bacteriocin transporter
    0.00023   18.5   0.0    0.00033   18.0   0.0    1.1  1  TIGR03522 GldA_ABC_ATP: gliding motility-associated ABC transporter ATP-binding subunit GldA
    0.00028   17.4   0.0    0.00047   16.7   0.0    1.3  1  TIGR01192 chvA: glucan exporter ATP-binding protein
    0.00054   16.1   0.0    0.00073   15.6   0.0    1.1  1  TIGR00630 uvra: excinuclease ABC subunit A
     0.0014   16.2   8.4     0.0026   15.3   5.8    1.6  1  TIGR01247 drrB: daunorubicin resistance ABC transporter membrane protein
     0.0086   13.0   0.0      0.012   12.6   0.0    1.1  1  TIGR01186 proV: glycine betaine/L-proline transport ATP binding subunit
  ------ inclusion threshold ------
      0.014   12.2   0.0      0.021   11.6   0.0    1.1  1  TIGR00634 recN: DNA repair protein RecN
       0.14    9.5  15.4     0.0095   13.3   6.9    1.7  1  TIGR00025 Mtu_efflux: ABC transporter efflux protein, DrrB family


Domain annotation for each model (and alignments):
>> TIGR00955  3a01204: pigment precursor permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  248.4   2.6   4.3e-76   3.2e-74     150     601 ..       2     431 ..       1     445 [. 0.85

  Alignments for each domain:
  == domain 1    score: 248.4 bits;  conditional E-value: 4.3e-76
   TIGR00955 150 LrkcadtrigvpgrvkglSgGerkRlalaselltdPilLfcDEPTsGLDsfsaasvvkvLkklaqkgktviltiHQPsselfelfdkii.llaeGrvvylGspeeavkffselglpcPenynpadFvlkvlavepgseeesretiekicdaeaksklsreveentnlasgkekklvkdseneekikykasfltqflvllkRsllsvlrdplllkvrllqvivvavligliylg...qeltqkgvqningalFllltemtFqtvfavinvftaelpvflREtasglYrlsaYylaktlaelPlliilpllflsivYwmiglksgalkfltalllvvlvanvatsfglllscafestslalsvappvvipfllfgGfflnvdsvPvyfkwlsylSwfrYanEallinqwsdvkeielleantteecpssg.eeiLeelsfeaadlaldllilvvlilvf 601
                 L++cadt+ig p  +kg+SgGe+kR a+a+el+++P+l f+DEPTsGLDs+ a+svvk L+ l+q+g  v++tiHQPss+ f+lf++++ l+  G   +lG   ++ + +++ g pcP++yn ad+vl +l++ep+++  +   ++k +   a+ + ++   ++t+       +l+         + k +f++q+l +l R   +++r+   l   ++    + +l g+++++   ++ +  +v+   ga+  ++   +F +  +v+  ++  + +flRE+a g+Y+  a++++ ++ +l + ++ +l+   i+Yw++gl+  ++ f   +l+  ++a++ +++++ll+ a+++++ a+++ p +++p +lf+Gff+++d++Pv+++w ++l  ++Y     li ++   ++ +        ++++ +   +L++ +++  dl+  +l  +v+i++f
  MMETSP1137-20121227|5321_1   2 LTECADTMIGGPL-MKGVSGGEKKRTAIAVELVKQPKLCFLDEPTSGLDSYAANSVVKSLRVLSQRGCCVLCTIHQPSSDTFHLFKQVLvLMRGGSQFFLGGIGDLSSSLASAGKPCPAEYNLADHVLYLLQEEPNETLLE---MSKAISGGANATSKQPGAVATT-------GLTIR-----MPR-KPGFMVQLLTVLNREGHNTIRNKPALIASVGVPFFLNLLFGVLFFQagdTGTDDYTVRTHFGAVTQVAIGGMFGAAQGVLVKLPLVRGLFLREYAAGTYSAGAFFITFVVQQLIQGLVIALVTYLIAYWLMGLNGPFMLF---VLTFWASAQAISGIAFLLGVAVSDVETATALSPLILVPQILFAGFFIESDQIPVWLRWAQWLCVLKYNINLYLIIEFGPNTRSDWP------PVDRLEaARLLDSNDVD-PDLWWVYLLALVIIFTF 431
                 89********666.9************************************************************************8636788999**********************************9999876544...4555544444333333333333.......22222.....223.678*******************9999999999*************9655667889*******************************************************************************987665...567789999999*******************************************************9888888888777776632......23333336677777777.45544333333334444 PP

>> TIGR00956  3a01205: pleiotropic drug resistance family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  106.1   0.1   3.2e-33   2.4e-31     887    1019 ..       2     129 ..       1     140 [. 0.92
   2 !   48.4   1.8   8.2e-16   6.1e-14     400     612 ..     175     388 ..     166     394 .. 0.87

  Alignments for each domain:
  == domain 1    score: 106.1 bits;  conditional E-value: 3.2e-33
   TIGR00956  887 lesyadAvvGvpGe.GLnveqRkrltigveLvAkPklllFlDePtsGLDsqtawsivkllrkladaGqailCtiHqPsailleeFDrLLllqkGGktvYfGdlGensktlieYFekhGaekcpeeanPAewmLe 1019
                  l++ ad ++G p + G++   +kr +i+veLv +P  l FlDePtsGLDs +a s+vk lr l++ G  +lCtiHqPs + ++ F ++L+l +GG   + G +G+ s  l         ++cp+e+n A+++L 
  MMETSP1137-20121227|5321_1    2 LTECADTMIGGPLMkGVSGGEKKRTAIAVELVKQP-KLCFLDEPTSGLDSYAANSVVKSLRVLSQRGCCVLCTIHQPSSDTFHLFKQVLVLMRGGSQFFLGGIGDLSSSLAS-----AGKPCPAEYNLADHVLY 129 
                  67889*****99888********************.689******************************************************************9999853.....45789999999998886 PP

  == domain 2    score: 48.4 bits;  conditional E-value: 8.2e-16
   TIGR00956 400 fsqqvkyilaRellrlkgdasvtlikvvgniimalilssvfynlek.ntsdfyvrg..galffallfnafsslle.iaslyearpivekhrkyalyhPsadalasilselPvkliesvvfniilyflvnlrreagrFffylLilflatlvmshlFrsigavtktlseAmtlaallllalslytgfviprkeilkWskWiayvnPlayafesllvnef 612
                 f+ q+  +l+Re +   +++   + +v    +  l+ + +f++     t+d  vr+  ga+    +  +f +    +++l   r ++ ++ +   y   a+ ++ ++ +l   l++++v  +i y+l++l+   g F+ + L    +++++s++  ++g +++ +++A++l+ l+l+  +l++gf i   +i+ W++W++++  l+y  +  l+ ef
  MMETSP1137-20121227|5321_1 175 FMVQLLTVLNREGHNTIRNKPALIASVGVPFFLNLLFGVLFFQAGDtGTDDYTVRThfGAVTQVAIGGMFGAAQGvLVKLPLVRGLFLREYAAGTYSAGAFFITFVVQQLIQGLVIALVTYLIAYWLMGLN---GPFMLFVLTFWASAQAISGIAFLLGVAVSDVETATALSPLILVPQILFAGFFIESDQIPVWLRWAQWLCVLKYNINLYLIIEF 388
                 78899999******999999999*******************99875555555554335555555555554444314566777888999999999**********************************95...99*******9***************************************************************9998888887 PP

>> TIGR01188  drrA: daunorubicin resistance ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.0   0.0   1.5e-15   1.1e-13     122     199 ..      15      93 ..       4     138 .. 0.85

  Alignments for each domain:
  == domain 1    score: 49.0 bits;  conditional E-value: 1.5e-15
   TIGR01188 122 vktysgGmrrrlelaasliaqPevlfLDEPtiGLDprtrraiwdlieelkkegvtilltthyl.eeadkladrvaiidk 199
                 +k  sgG ++r  +a+ l++qP++ fLDEPt+GLD+ +++++ + ++ l + g  +l t h+   +  +l  +v ++ +
  MMETSP1137-20121227|5321_1  15 MKGVSGGEKKRTAIAVELVKQPKLCFLDEPTSGLDSYAANSVVKSLRVLSQRGCCVLCTIHQPsSDTFHLFKQVLVLMR 93 
                 6789*****************************************************9998741345555555555444 PP

>> TIGR02673  FtsE: cell division ATP-binding protein FtsE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.8   0.0   3.2e-14   2.4e-12     137     198 ..      17      78 ..      13      95 .. 0.91

  Alignments for each domain:
  == domain 1    score: 44.8 bits;  conditional E-value: 3.2e-14
   TIGR02673 137 elsgGeqqRvaiaRaivnkPelllaDePtGnlDdelserildllkelnkrGttvivathdee 198
                  +sgGe++R+aia  +v++P+l   DePt  lD+  ++++++ l+ l++rG  v+ + h+ +
  MMETSP1137-20121227|5321_1  17 GVSGGEKKRTAIAVELVKQPKLCFLDEPTSGLDSYAANSVVKSLRVLSQRGCCVLCTIHQPS 78 
                 68*********************************************************865 PP

>> TIGR02857  CydD: thiol reductant ABC exporter, CydD subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.5   0.0     6e-14   4.4e-12     449     518 ..       7      78 ..       1      91 [. 0.81
   2 ?   -2.0   1.0       3.7   2.8e+02     232     273 ..     311     351 ..     308     354 .. 0.75

  Alignments for each domain:
  == domain 1    score: 43.5 bits;  conditional E-value: 6e-14
   TIGR02857 449 eteiG.ergagLSgGqrqRlaLArallrdapllllDEPtahLDaeteaevlealrela.egrtvllvaHrla 518
                 +t+iG    +g+SgG+++R a+A  l+++ +l  lDEPt+ LD+ +++ v+++lr l+ +g  vl   H+++
  MMETSP1137-20121227|5321_1   7 DTMIGgPLMKGVSGGEKKRTAIAVELVKQPKLCFLDEPTSGLDSYAANSVVKSLRVLSqRGCCVLCTIHQPS 78 
                 56665145689***********************************************45566666668765 PP

  == domain 2    score: -2.0 bits;  conditional E-value: 3.7
   TIGR02857 232 lvLellat.lsvAlvAVyiGlrllagkldlaegLlvLlLaPev 273
                 +vL + a+  ++  +A  +G+    ++++ a++L  L+L+P++
  MMETSP1137-20121227|5321_1 311 FVLTFWASaQAISGIAFLLGVA--VSDVETATALSPLILVPQI 351
                 5666665414777788887765..5799999999999999975 PP

>> TIGR02982  heterocyst_DevA: ABC exporter ATP-binding subunit, DevA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.4   0.0   8.5e-14   6.3e-12     140     201 ..      16      76 ..      13      94 .. 0.92

  Alignments for each domain:
  == domain 1    score: 43.4 bits;  conditional E-value: 8.5e-14
   TIGR02982 140 edlsgGqkqrvaiaralvarPklvladePtaaldkksgrevvellqklareqgttillvthd 201
                 + +sgG k+r aia  lv++Pkl + dePt+ ld+ ++++vv+ l+ l+ ++g+++l   h 
  MMETSP1137-20121227|5321_1  16 KGVSGGEKKRTAIAVELVKQPKLCFLDEPTSGLDSYAANSVVKSLRVLS-QRGCCVLCTIHQ 76 
                 568******************************************9987.589999998886 PP

>> TIGR01166  cbiO: cobalt ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.8   0.0   1.1e-13   8.4e-12     126     185 ..      16      75 ..      11      78 .. 0.94

  Alignments for each domain:
  == domain 1    score: 42.8 bits;  conditional E-value: 1.1e-13
   TIGR01166 126 hllsgGekkrvaiagavalrpdvllldePtagldpaGaeqlleilrklreeGktvvisth 185
                 + +sgGekkr+aia  ++ +p++++ldePt+gld+  a+ +++ lr l + G  v+ + h
  MMETSP1137-20121227|5321_1  16 KGVSGGEKKRTAIAVELVKQPKLCFLDEPTSGLDSYAANSVVKSLRVLSQRGCCVLCTIH 75 
                 568**************************************************9999888 PP

>> TIGR02315  ABC_phnC: phosphonate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.5   0.0   1.4e-13     1e-11     145     226 ..      17      99 ..      14     109 .. 0.83

  Alignments for each domain:
  == domain 1    score: 42.5 bits;  conditional E-value: 1.4e-13
   TIGR02315 145 qLsGGqqqRvaiaRalaqqpklilaDEPiasLDpksskqvmdllkrinkekgitvivnlHq..vdlakkyadrivglkageivf 226
                  +sGG+++R aia  l++qpkl + DEP++ LD  +++ v++ l+ +++ +g  v++++Hq   d  + + + +v ++ g+ +f
  MMETSP1137-20121227|5321_1  17 GVSGGEKKRTAIAVELVKQPKLCFLDEPTSGLDSYAANSVVKSLRVLSQ-RGCCVLCTIHQpsSDTFHLFKQVLVLMRGGSQFF 99 
                 57******************************************98765.79********922345555666666666666555 PP

>> TIGR03864  PQQ_ABC_ATP: ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.1   0.0     4e-13   2.9e-11     131     208 ..      16      94 ..      12     113 .. 0.86

  Alignments for each domain:
  == domain 1    score: 41.1 bits;  conditional E-value: 4e-13
   TIGR03864 131 reLnGGhrrrveiarallhePklLLlDeatvGLDiesraalveevrelvreeglsvLWathl..vdeveaedrlvvlhkG 208
                 + ++GG+++r  ia  l+ +Pkl  lDe+t GLD  + +++v+++r l+ ++g +vL + h    d  +   +++vl +G
  MMETSP1137-20121227|5321_1  16 KGVSGGEKKRTAIAVELVKQPKLCFLDEPTSGLDSYAANSVVKSLRVLS-QRGCCVLCTIHQpsSDTFHLFKQVLVLMRG 94 
                 5689*******************************************99.89*********6335777778888888877 PP

>> TIGR03608  L_ocin_972_ABC: putative bacteriocin export ABC transporter, lactococcin 972 group
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.8   0.0   4.8e-13   3.6e-11     135     195 ..      18      78 ..      14      88 .. 0.95

  Alignments for each domain:
  == domain 1    score: 40.8 bits;  conditional E-value: 4.8e-13
   TIGR03608 135 lsgGekqRvalarillkeselilADEPtgsLDkknreevlellkelkeegktiiivtHdpe 195
                 +sgGek+R a+a  l+k+++l + DEPt+ LD+   + v++ l+ l ++g  +++  H+p+
  MMETSP1137-20121227|5321_1  18 VSGGEKKRTAIAVELVKQPKLCFLDEPTSGLDSYAANSVVKSLRVLSQRGCCVLCTIHQPS 78 
                 7*********************************************************875 PP

>> TIGR01842  type_I_sec_PrtD: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.6   0.0   2.7e-12     2e-10     445     533 ..       7      98 ..       1     106 [. 0.87

  Alignments for each domain:
  == domain 1    score: 37.6 bits;  conditional E-value: 2.7e-12
   TIGR01842 445 dteig.egGaaLsgGqrqRiaLaRalygdPklvvLDePnanLDeeGeqalakalkelkarkitvvvithrps..llelvdkilvlkdGalka 533
                 dt ig +  +++sgG ++R a+a  l  +Pkl  LDeP + LD+     ++k l  l +r++ v+   h+ps    +l +++lvl  G  + 
  MMETSP1137-20121227|5321_1   7 DTMIGgPLMKGVSGGEKKRTAIAVELVKQPKLCFLDEPTSGLDSYAANSVVKSLRVLSQRGCCVLCTIHQPSsdTFHLFKQVLVLMRGGSQF 98 
                 777752456789**********************************************************9833578899999998886554 PP

>> TIGR03873  F420-0_ABC_ATP: proposed F420-0 ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.6   0.0   4.1e-12   3.1e-10     135     213 ..      15      94 ..       2      99 .. 0.88

  Alignments for each domain:
  == domain 1    score: 37.6 bits;  conditional E-value: 4.1e-12
   TIGR03873 135 lstlsGGerqrvhlaralaqePklllldePtnhldvsaqlellalvrelaaegvtvvvalhdlnl.aasvcdhvvvldgG 213
                 ++ +sGGe++r+ +a  l ++Pkl +ldePt  ld  a  ++++ +r l++ g  v+ ++h  +  + ++  +v+vl  G
  MMETSP1137-20121227|5321_1  15 MKGVSGGEKKRTAIAVELVKQPKLCFLDEPTSGLDSYAANSVVKSLRVLSQRGCCVLCTIHQPSSdTFHLFKQVLVLMRG 94 
                 6789*********************************************************8764145666777777655 PP

>> TIGR01978  sufC: FeS assembly ATPase SufC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.0   0.0   6.9e-12   5.1e-10     140     221 ..      13      94 ..       2     112 .. 0.82

  Alignments for each domain:
  == domain 1    score: 37.0 bits;  conditional E-value: 6.9e-12
   TIGR01978 140 slneGfsGGekkrneilqlallePklaiLDeiDsGlDvDalkivaegvnklreeekalliithyerllelikPdvvhvlldG 221
                  l +G sGGekkr+ i   ++ +Pkl+ LDe  sGlD  a   v++ +  l ++   +l   h+         ++v vl++G
  MMETSP1137-20121227|5321_1  13 PLMKGVSGGEKKRTAIAVELVKQPKLCFLDEPTSGLDSYAANSVVKSLRVLSQRGCCVLCTIHQPSSDTFHLFKQVLVLMRG 94 
                 5779********************************************9999888777777776554443344556666555 PP

>> TIGR00960  3a0501s02: type II secretory pathway family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.6   0.0   1.1e-11   8.1e-10     138     197 ..      17      76 ..      13      95 .. 0.89

  Alignments for each domain:
  == domain 1    score: 36.6 bits;  conditional E-value: 1.1e-11
   TIGR00960 138 qlsgGeqqrvaiaravvnkPallladePtgnlddelsrdilelleevnraGttvlvathd 197
                  +sgGe++r aia  +v++P+l + dePt+ ld+  ++ +++ l+ + ++G  vl + h+
  MMETSP1137-20121227|5321_1  17 GVSGGEKKRTAIAVELVKQPKLCFLDEPTSGLDSYAANSVVKSLRVLSQRGCCVLCTIHQ 76 
                 58******************************************************9997 PP

>> TIGR01288  nodI: nodulation ABC transporter NodI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.0   0.0   1.1e-11     8e-10     136     194 ..      18      76 ..      11      97 .. 0.90

  Alignments for each domain:
  == domain 1    score: 36.0 bits;  conditional E-value: 1.1e-11
   TIGR01288 136 lsggmkrrltlaralindpqllildepttgldpharhliwerlrsllargktilltthl 194
                 +sgg k+r ++a  l+++p+l  ldept+gld +a   + + lr l  rg  +l t h 
  MMETSP1137-20121227|5321_1  18 VSGGEKKRTAIAVELVKQPKLCFLDEPTSGLDSYAANSVVKSLRVLSQRGCCVLCTIHQ 76 
                 79******************************************************995 PP

>> TIGR02211  LolD_lipo_ex: lipoprotein releasing system, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.0   0.0   1.4e-11   1.1e-09     142     190 ..      18      66 ..      15      94 .. 0.85

  Alignments for each domain:
  == domain 1    score: 36.0 bits;  conditional E-value: 1.4e-11
   TIGR02211 142 lsGGerqrvaiaralvnkPklvladePtgnldkktakkifelllelnke 190
                 +sGGe++r aia  lv++Pkl + dePt+ ld+ +a+++ + l+ l + 
  MMETSP1137-20121227|5321_1  18 VSGGEKKRTAIAVELVKQPKLCFLDEPTSGLDSYAANSVVKSLRVLSQR 66 
                 7**************************************9998877654 PP

>> TIGR03375  type_I_sec_LssB: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.5   0.0   2.1e-11   1.5e-09     602     677 ..      16      94 ..       4      96 .. 0.85

  Alignments for each domain:
  == domain 1    score: 34.5 bits;  conditional E-value: 2.1e-11
   TIGR03375 602 esLSgGQrqavalaRallkdppillLDEPtsalDnsseekllerLkelladkTlvlvt.Hrts..lLelvdriivldkG 677
                 +++SgG ++  a+a  l+k+p++ +LDEPts lD+ + ++++++L+ l++    vl t H+ s    +l  +++vl +G
  MMETSP1137-20121227|5321_1  16 KGVSGGEKKRTAIAVELVKQPKLCFLDEPTSGLDSYAANSVVKSLRVLSQRGCCVLCTiHQPSsdTFHLFKQVLVLMRG 94 
                 579***********************************************77777776487653367788888777665 PP

>> TIGR03740  galliderm_ABC: lantibiotic protection ABC transporter, ATP-binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.4   0.0   5.2e-11   3.9e-09     125     182 ..      18      75 ..      12      95 .. 0.92

  Alignments for each domain:
  == domain 1    score: 34.4 bits;  conditional E-value: 5.2e-11
   TIGR03740 125 fslGmkqrlGiaiallnkPkllildePtnGldPlGiqelreliksfpekGitvilssh 182
                  s G k+r  ia+ l+++Pkl  ldePt Gld +  + + + ++ ++++G  v+ + h
  MMETSP1137-20121227|5321_1  18 VSGGEKKRTAIAVELVKQPKLCFLDEPTSGLDSYAANSVVKSLRVLSQRGCCVLCTIH 75 
                 67799************************************************99887 PP

>> TIGR02868  CydC: thiol reductant ABC exporter, CydC subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.4   0.0   5.6e-11   4.2e-09     469     528 ..      15      75 ..       1      77 [. 0.78

  Alignments for each domain:
  == domain 1    score: 33.4 bits;  conditional E-value: 5.6e-11
   TIGR02868 469 garlSGGerqRlalARaLladapvllLDEPtehLDaeteeelledLl.aaeegrtvvlvth 528
                  + +SGGe++R a+A  L+++ ++  LDEPt +LD  +++++++ L+   ++g  v+   h
  MMETSP1137-20121227|5321_1  15 MKGVSGGEKKRTAIAVELVKQPKLCFLDEPTSGLDSYAANSVVKSLRvLSQRGCCVLCTIH 75 
                 4679******************************************944444444555555 PP

>> TIGR03796  NHLM_micro_ABC1: NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.6   0.0   7.4e-11   5.5e-09     616     685 ..      18      92 ..      12      96 .. 0.84

  Alignments for each domain:
  == domain 1    score: 32.6 bits;  conditional E-value: 7.4e-11
   TIGR03796 616 lsGGqrqRleiARaLvknPsiLilDEatsaLDaetEkaidenlr...rRgctciivaHRLs..tiRdcdeiivle 685
                 +sGG+++R  iA  Lvk+P +  lDE ts LD+ + +++++ lr   +Rgc ++   H  s  t     +++vl 
  MMETSP1137-20121227|5321_1  18 VSGGEKKRTAIAVELVKQPKLCFLDEPTSGLDSYAANSVVKSLRvlsQRGCCVLCTIHQPSsdTFHLFKQVLVLM 92 
                 7**************************************999876669*****9999987633455555555555 PP

>> TIGR02324  CP_lyasePhnL: phosphonate C-P lyase system protein PhnL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.0   0.0   1.2e-10   8.8e-09     150     208 ..      18      76 ..      14      88 .. 0.91

  Alignments for each domain:
  == domain 1    score: 33.0 bits;  conditional E-value: 1.2e-10
   TIGR02324 150 fsGGekqRvniaraliadrPiL.LLdePtasLdaanrkvvvelikeakargaaligifhd 208
                  sGGek+R  ia  l++ +P L  LdePt+ Ld+   + vv+ ++ + +rg+ ++  +h+
  MMETSP1137-20121227|5321_1  18 VSGGEKKRTAIAVELVK-QPKLcFLDEPTSGLDSYAANSVVKSLRVLSQRGCCVLCTIHQ 76 
                 69***************.7877479******************************99997 PP

>> TIGR02142  modC_ABC: molybdate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.1   0.0     2e-10   1.5e-08     131     208 ..      17      94 ..      12     113 .. 0.81

  Alignments for each domain:
  == domain 1    score: 32.1 bits;  conditional E-value: 2e-10
   TIGR02142 131 kLsGGekqRvaigRAlLssPeLLlmDePLaaLDekrkkeilPyLerlsaelkiPilyvsHsl.devarladrvvvledG 208
                  +sGGek+R ai+  l+ +P+L  +DeP + LD+   + ++  L+ ls+     +l   H+  ++  +l  +v+vl  G
  MMETSP1137-20121227|5321_1  17 GVSGGEKKRTAIAVELVKQPKLCFLDEPTSGLDSYAANSVVKSLRVLSQRG-CCVLCTIHQPsSDTFHLFKQVLVLMRG 94 
                 58******************************************9999875.555655565425777888887776655 PP

>> TIGR03797  NHLM_micro_ABC2: NHLM bacteriocin system ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.0   0.0   5.5e-10   4.1e-08     587     635 ..      16      64 ..       8      76 .. 0.93
   2 ?   -1.7   0.5       2.1   1.5e+02     226     269 ..     261     304 ..     246     344 .. 0.60

  Alignments for each domain:
  == domain 1    score: 30.0 bits;  conditional E-value: 5.5e-10
   TIGR03797 587 gtlSGGQrQRlliAralvrkPrillfDEATSALDNrtQaiVsesleklk 635
                 +++SGG ++R  iA  lv++P++ ++DE TS LD  + + V++sl  l+
  MMETSP1137-20121227|5321_1  16 KGVSGGEKKRTAIAVELVKQPKLCFLDEPTSGLDSYAANSVVKSLRVLS 64 
                 579*****************************************98875 PP

  == domain 2    score: -1.7 bits;  conditional E-value: 2.1
   TIGR03797 226 fFreysagdLasramgvsqirrllsgatlkallssifallnlvl 269
                 f rey ag  +  a  ++ + ++l + ++ al++ ++a   ++l
  MMETSP1137-20121227|5321_1 261 FLREYAAGTYSAGAFFITFVVQQLIQGLVIALVTYLIAYWLMGL 304
                 67777777777777777777777766666666666665444332 PP

>> TIGR00958  3a01208: antigen peptide transporter 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.0   0.0   4.6e-10   3.5e-08     608     689 ..       7      94 ..       1     106 [. 0.75

  Alignments for each domain:
  == domain 1    score: 30.0 bits;  conditional E-value: 4.6e-10
   TIGR00958 608 dtevg.ekGsqlsgGqkqriAiARALvrkPrvLiLDeAtSALDa.eveqllqesk..saksrtvlliahrLs..tvekadkilvlkkg 689
                 dt +g +  + +sgG k+r AiA  Lv++P +  LDe tS LD+ + + ++++ +  s+++  vl   h+ s  t +  +++lvl +g
  MMETSP1137-20121227|5321_1   7 DTMIGgPLMKGVSGGEKKRTAIAVELVKQPKLCFLDEPTSGLDSyAANSVVKSLRvlSQRGCCVLCTIHQPSsdTFHLFKQVLVLMRG 94 
                 566642344568********************************77788888866114555567777777543367777777777766 PP

>> TIGR03771  anch_rpt_ABC: anchored repeat-type ABC transporter, ATP-binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.9   0.0   6.1e-10   4.5e-08     113     174 ..      17      78 ..       1      94 [. 0.82

  Alignments for each domain:
  == domain 1    score: 30.9 bits;  conditional E-value: 6.1e-10
   TIGR03771 113 elsGGqrqrvlvaralavkpslllldepftGldlpsqellvelfeelagegtailmtthdla 174
                  +sGG+++r  +a  l  +p+l +ldep +Gld  + +++v+ ++ l++ g ++l t h+ +
  MMETSP1137-20121227|5321_1  17 GVSGGEKKRTAIAVELVKQPKLCFLDEPTSGLDSYAANSVVKSLRVLSQRGCCVLCTIHQPS 78 
                 48*********************************************************854 PP

>> TIGR00972  3a0107s01c2: phosphate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.2   0.0   7.9e-10   5.9e-08     144     200 ..      17      73 ..      13      94 .. 0.91

  Alignments for each domain:
  == domain 1    score: 30.2 bits;  conditional E-value: 7.9e-10
   TIGR00972 144 sLsGGqqqrlciaralavePevlLlDePtsaLDpiatekieeliqeLkkkytivivt 200
                 ++sGG ++r +ia  l  +P++  lDePts LD+ a++++ + ++ L+++   v+ t
  MMETSP1137-20121227|5321_1  17 GVSGGEKKRTAIAVELVKQPKLCFLDEPTSGLDSYAANSVVKSLRVLSQRGCCVLCT 73 
                 78*********************************************9998888776 PP

>> TIGR01189  ccmA: heme ABC exporter, ATP-binding protein CcmA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.6   0.0   1.5e-09   1.1e-07     126     188 ..      16      78 ..       4      88 .. 0.93

  Alignments for each domain:
  == domain 1    score: 29.6 bits;  conditional E-value: 1.5e-09
   TIGR01189 126 aqLsAGqkrRlalarLllskaplWiLDEPttalDkegvellaellaaHlargGivllathqdl 188
                 + +s G k+R a+a  l+++ +l  LDEPt  lD  + + + + l+   +rg  vl + hq+ 
  MMETSP1137-20121227|5321_1  16 KGVSGGEKKRTAIAVELVKQPKLCFLDEPTSGLDSYAANSVVKSLRVLSQRGCCVLCTIHQPS 78 
                 6689********************************************************986 PP

>> TIGR03410  urea_trans_UrtE: urea ABC transporter, ATP-binding protein UrtE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.3   0.0   1.6e-09   1.2e-07     132     209 ..      18      95 ..      11     105 .. 0.91

  Alignments for each domain:
  == domain 1    score: 29.3 bits;  conditional E-value: 1.6e-09
   TIGR03410 132 LsGGqqqqlaiaRaLvtePklllLDePteGiqPsiikeiekvikelakekdlaillveqvldfaleladrylvlerGe 209
                 +sGG ++  aia  Lv++Pkl  LDePt G+     + + k ++ l++++   +  + q  + + +l +++lvl rG 
  MMETSP1137-20121227|5321_1  18 VSGGEKKRTAIAVELVKQPKLCFLDEPTSGLDSYAANSVVKSLRVLSQRGCCVLCTIHQPSSDTFHLFKQVLVLMRGG 95 
                 69********************************************99888888889999999999999999998885 PP

>> TIGR03258  PhnT: 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.0   0.0   1.5e-09   1.1e-07     137     222 ..      16     101 ..       7     113 .. 0.86

  Alignments for each domain:
  == domain 1    score: 29.0 bits;  conditional E-value: 1.5e-09
   TIGR03258 137 aqlsGGqqqrvalaralvvrpdvllldeplsaldaqlrasvveelkalhrelpeltvlyvthd.rdealvladkil.lmkeGslialG 222
                 + +sGG ++r a+a  lv +p++ +ldep s ld+   +svv+ l+ l ++     vl+  h+  ++++ l  ++l lm+ Gs   lG
  MMETSP1137-20121227|5321_1  16 KGVSGGEKKRTAIAVELVKQPKLCFLDEPTSGLDSYAANSVVKSLRVLSQRG--CCVLCTIHQpSSDTFHLFKQVLvLMRGGSQFFLG 101
                 568*********************************************9985..6899999973568888888876368999876666 PP

>> TIGR01846  type_I_sec_HlyB: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.8   0.0   2.1e-09   1.6e-07     593     665 ..      17      92 ..       6      97 .. 0.84

  Alignments for each domain:
  == domain 1    score: 27.8 bits;  conditional E-value: 2.1e-09
   TIGR01846 593 alsGGqrqrialaralvanPrilildeatsaldyeseavimrnlreic.kgrtviiiahrls..tvraadrilvle 665
                  +sGG ++r a+a  lv++P++  lde ts ld  + +++ + lr ++ +g  v++  h+ s  t +  +++lvl 
  MMETSP1137-20121227|5321_1  17 GVSGGEKKRTAIAVELVKQPKLCFLDEPTSGLDSYAANSVVKSLRVLSqRGCCVLCTIHQPSsdTFHLFKQVLVLM 92 
                 57*******************************************9983578899999975422556666666665 PP

>> TIGR02769  nickel_nikE: nickel import ATP-binding protein NikE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.0   0.0   3.9e-09   2.9e-07     150     226 ..      17      94 ..      10     115 .. 0.79

  Alignments for each domain:
  == domain 1    score: 28.0 bits;  conditional E-value: 3.9e-09
   TIGR02769 150 qlsGGqlqriniaralavePklivldeavsnldlvlqasilellkklkqefGlaylfithdlrlvqk.faqrvlvlde 226
                  +sGG  +r +ia  l  +Pkl  lde  s ld +   s+++ l+ l q++      i    +   + f q ++++ +
  MMETSP1137-20121227|5321_1  17 GVSGGEKKRTAIAVELVKQPKLCFLDEPTSGLDSYAANSVVKSLRVLSQRGCCVLCTIHQPSSDTFHlFKQVLVLMRG 94 
                 69*********************************************9986554444443333333404444444544 PP

>> TIGR01187  potA: polyamine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.4   0.0   4.9e-09   3.6e-07     100     160 ..      17      76 ..       8      98 .. 0.78

  Alignments for each domain:
  == domain 1    score: 27.4 bits;  conditional E-value: 4.9e-09
   TIGR01187 100 qlsGGqrqrvalaravvkkPkiLLlDeplsaLDkkLrdqmqlelkalqeklGitvvlvthD 160
                  +sGG ++r a+a  +vk+Pk+ +lDep s LD    + + + l+ l ++ G  v+   h 
  MMETSP1137-20121227|5321_1  17 GVSGGEKKRTAIAVELVKQPKLCFLDEPTSGLDSYAANSVVKSLRVLSQR-GCCVLCTIHQ 76 
                 68**********************************99999999998766.6544444443 PP

>> TIGR02204  MsbA_rel: ABC transporter, permease/ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.9   0.0   5.3e-09   3.9e-07     466     525 ..       6      66 ..       1      92 [. 0.84

  Alignments for each domain:
  == domain 1    score: 26.9 bits;  conditional E-value: 5.3e-09
   TIGR02204 466 ydtllGer.gvtLsGGqkqriaiarailkdapiLLLdeatsaLdaeseqlvqqaleelmkg 525
                  dt++G      +sGG k+r aia  ++k+ ++ +Lde ts Ld+ + + v ++l  l++ 
  MMETSP1137-20121227|5321_1   6 ADTMIGGPlMKGVSGGEKKRTAIAVELVKQPKLCFLDEPTSGLDSYAANSVVKSLRVLSQR 66 
                 5666665414569******************************************999875 PP

>> TIGR01184  ntrCD: nitrate ABC transporter, ATP-binding proteins C and D
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.3   0.0     7e-09   5.2e-07     113     199 ..      16     103 ..       5     111 .. 0.82

  Alignments for each domain:
  == domain 1    score: 27.3 bits;  conditional E-value: 7e-09
   TIGR01184 113 eqlsggmkqrvaiaralsirpklllldepfgaldaltreelqekllkiveearvtvlmvthd..vdealllsdrvvmltngpaakigei 199
                 + +sgg k+r aia  l  +pkl +ldep   ld+ + +++ +  l+++ ++ + vl   h+   d   l+ + +v++  g +  +g i
  MMETSP1137-20121227|5321_1  16 KGVSGGEKKRTAIAVELVKQPKLCFLDEPTSGLDSYAANSVVKS-LRVLSQRGCCVLCTIHQpsSDTFHLFKQVLVLMRGGSQFFLGGI 103
                 569*********************************99998866.68888888888888886324555566667777777777777766 PP

>> TIGR03269  met_CoM_red_A2: methyl coenzyme M reductase system, component A2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.8   0.0     1e-08   7.7e-07     167     228 ..      16      76 ..      12      94 .. 0.80

  Alignments for each domain:
  == domain 1    score: 25.8 bits;  conditional E-value: 1e-08
   TIGR03269 167 rdlsGGekqrvvlarqlakeplllladeptGtldpktaklvhealkeavkeedislvltshw 228
                 + +sGGek+r  +a +l+k+p l + dept  ld  +a+ v + l+    +++ +++ t h 
  MMETSP1137-20121227|5321_1  16 KGVSGGEKKRTAIAVELVKQPKLCFLDEPTSGLDSYAANSVVKSLRVL-SQRGCCVLCTIHQ 76 
                 568999999999999999999999999999999999999998888754.4556666666665 PP

>> TIGR02633  xylG: D-xylose ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.7   0.0   1.1e-08     8e-07     403     479 ..      17      94 ..      11      99 .. 0.89

  Alignments for each domain:
  == domain 1    score: 25.7 bits;  conditional E-value: 1.1e-08
   TIGR02633 403 rlsGGnqqkavlakllllnprvlildeptrGvdvGakyeiyklinqlaqeGvaiiv.vsselaevlGlsdrvlvigeG 479
                 ++sGG+++++ +a  l+ +p++  ldept G+d  a   + k +  l+q+G +++  +    ++ + l  +vlv+ +G
  MMETSP1137-20121227|5321_1  17 GVSGGEKKRTAIAVELVKQPKLCFLDEPTSGLDSYAANSVVKSLRVLSQRGCCVLCtIHQPSSDTFHLFKQVLVLMRG 94 
                 78*************************************************998752677778888888888888776 PP

>> TIGR03005  ectoine_ehuA: ectoine/hydroxyectoine ABC transporter, ATP-binding protein EhuA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.0   0.0   1.4e-08     1e-06     147     195 ..      18      66 ..      11      94 .. 0.88

  Alignments for each domain:
  == domain 1    score: 26.0 bits;  conditional E-value: 1.4e-08
   TIGR03005 147 lsGGqkqrvaiaralalrpkvllfdevtsaldpelveevlnvlrrlase 195
                 +sGG+k+r aia  l  +pk+ ++de+ts ld    + v++ lr l++ 
  MMETSP1137-20121227|5321_1  18 VSGGEKKRTAIAVELVKQPKLCFLDEPTSGLDSYAANSVVKSLRVLSQR 66 
                 79***************************************99998754 PP

>> TIGR02770  nickel_nikD: nickel import ATP-binding protein NikD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.8   0.0   1.8e-08   1.3e-06     126     184 ..      18      75 ..      14      95 .. 0.84

  Alignments for each domain:
  == domain 1    score: 25.8 bits;  conditional E-value: 1.8e-08
   TIGR02770 126 lsGGmlqRvmialallleaplliaDePttdlDvvvqaevLklleelrekrglgillith 184
                 +sGG  +R  ia+ l+ ++ l + DePt+ lD +++  v+k l+ l + rg  +l   h
  MMETSP1137-20121227|5321_1  18 VSGGEKKRTAIAVELVKQPKLCFLDEPTSGLDSYAANSVVKSLRVLSQ-RGCCVLCTIH 75 
                 79*****************************************98866.5777776666 PP

>> TIGR03719  ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.7   0.0   2.3e-08   1.7e-06     160     216 ..      16      75 ..      12      97 .. 0.80

  Alignments for each domain:
  == domain 1    score: 24.7 bits;  conditional E-value: 2.3e-08
   TIGR03719 160 eklsGGekrrvalcrlllekPdlllldePtnhld...aesvaWlekflkeykGtvvavth 216
                 + +sGGek+r a++  l+++P l +ldePt  ld   a+sv    + l++   +v++  h
  MMETSP1137-20121227|5321_1  16 KGVSGGEKKRTAIAVELVKQPKLCFLDEPTSGLDsyaANSVVKSLRVLSQRGCCVLCTIH 75 
                 568******************************944455666555666665555555445 PP

>> TIGR01277  thiQ: thiamine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.7   0.0   4.5e-08   3.3e-06     127     205 ..      16      94 ..       8      99 .. 0.86

  Alignments for each domain:
  == domain 1    score: 24.7 bits;  conditional E-value: 4.5e-08
   TIGR01277 127 eelsGGqrqrvalarclvrekpillldepfsaldpklreemlalvkkladekkltlllvthsl.sdaaaiasqvvvvedG 205
                 + +sGG+++r a+a  lv++  + +ldep s ld    + ++  ++ l +++   +l   h++ sd     +qv+v+  G
  MMETSP1137-20121227|5321_1  16 KGVSGGEKKRTAIAVELVKQPKLCFLDEPTSGLDSYAANSVVKSLRVL-SQRGCCVLCTIHQPsSDTFHLFKQVLVLMRG 94 
                 568********************************9999988877655.6778888888888726889999999999877 PP

>> TIGR03265  PhnT2: putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.8   0.0   6.7e-08     5e-06     135     183 ..      18      66 ..      15      95 .. 0.87

  Alignments for each domain:
  == domain 1    score: 23.8 bits;  conditional E-value: 6.7e-08
   TIGR03265 135 lsGGqqqrvaLaralalsPglLLLDePlsaLDakvrekLreelkklqrk 183
                 +sGG ++r a+a  l+ +P+l +LDeP s LD+   +++ + l+ l ++
  MMETSP1137-20121227|5321_1  18 VSGGEKKRTAIAVELVKQPKLCFLDEPTSGLDSYAANSVVKSLRVLSQR 66 
                 7************************************999999999876 PP

>> TIGR02314  ABC_MetN: D-methionine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.4   0.0   7.5e-08   5.6e-06     141     191 ..      18      67 ..      13      97 .. 0.86

  Alignments for each domain:
  == domain 1    score: 23.4 bits;  conditional E-value: 7.5e-08
   TIGR02314 141 lsggqkqrvaiaralasepkvllcdeatsaldpattqsilellkeinrrlg 191
                 +sgg+k+r aia  l  +pk+ + de ts ld  +++s+++ l+ + +r g
  MMETSP1137-20121227|5321_1  18 VSGGEKKRTAIAVELVKQPKLCFLDEPTSGLDSYAANSVVKSLRVLSQR-G 67 
                 79**************************************999877654.4 PP

>> TIGR02323  CP_lyasePhnK: phosphonate C-P lyase system protein PhnK
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.7   0.0   1.7e-07   1.3e-05     142     197 ..      18      75 ..       9     100 .. 0.72

  Alignments for each domain:
  == domain 1    score: 22.7 bits;  conditional E-value: 1.7e-07
   TIGR02323 142 fsGGmqqrlqiarnlvtrprlvfm.eptGGlvsvqarll..llrglvrelglaviivth 197
                  sGG ++r  ia +lv +p+l f+ ept Gl s  a  +   lr l  + g +v+   h
  MMETSP1137-20121227|5321_1  18 VSGGEKKRTAIAVELVKQPKLCFLdEPTSGLDSYAANSVvkSLRVL-SQRGCCVLCTIH 75 
                 79*****************************999887663334444.446677766666 PP

>> TIGR02203  MsbA_lipidA: lipid A export permease/ATP-binding protein MsbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3   0.0   2.3e-07   1.7e-05     470     521 ..      17      67 ..       2      95 .. 0.77

  Alignments for each domain:
  == domain 1    score: 21.3 bits;  conditional E-value: 2.3e-07
   TIGR02203 470 kLsGGqRqRlaiaRallkdaPiLiLDeatsaLDneseRlvqaaLerlmkgRt 521
                  +sGG ++R aia  l+k+  +  LDe ts LD+ +   v ++L  l +   
  MMETSP1137-20121227|5321_1  17 GVSGGEKKRTAIAVELVKQPKLCFLDEPTSGLDSYAANSVVKSLRVLSQR-G 67 
                 48******************************************877553.3 PP

>> TIGR00968  3a0106s01: sulfate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.0   0.0   2.7e-07     2e-05     131     207 ..      18      94 ..       9     108 .. 0.84

  Alignments for each domain:
  == domain 1    score: 22.0 bits;  conditional E-value: 2.7e-07
   TIGR00968 131 lsGGqrqrvalaralavepqvllldepfgaldakvrkelrawlrklhdevkvttvfvthdqeealevadrivvlekG 207
                 +sGG+++r a+a  l  +p++ +ldep + ld+   + + + lr l ++       +    +++ ++ +++ vl +G
  MMETSP1137-20121227|5321_1  18 VSGGEKKRTAIAVELVKQPKLCFLDEPTSGLDSYAANSVVKSLRVLSQRGCCVLCTIHQPSSDTFHLFKQVLVLMRG 94 
                 7***********************************99999999998876544444445556777888887777666 PP

>> TIGR01257  rim_protein: rim ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.0   3.6e-07   2.7e-05    2070    2130 ..      17      77 ..       4     113 .. 0.55
   2 ?   -1.5   2.2      0.55        41     702     770 ..     280     348 ..     257     368 .. 0.78

  Alignments for each domain:
  == domain 1    score: 19.0 bits;  conditional E-value: 3.6e-07
   TIGR01257 2070 tysggnkrklstaialigcpplvlldepttgmdpqarrmlwntivsiiregravvltshsm 2130
                    sgg+k++ + a+ l+  p l +ldept+g+d  a   + +++  + + g +v+ t h  
  MMETSP1137-20121227|5321_1   17 GVSGGEKKRTAIAVELVKQPKLCFLDEPTSGLDSYAANSVVKSLRVLSQRGCCVLCTIHQP 77  
                  3456666666666666666666666666666666666666655555555555555555532 PP

  == domain 2    score: -1.5 bits;  conditional E-value: 0.55
   TIGR01257 702 ldsfsimslsiflltifimhgrilhysdpfilflfll.afsiatimqsfllstlfskaslaaacsgviyf 770
                 +    i  l i l+t +i +  ++    pf+lf++ + a + a    +fll   +s    a+a s +i +
  MMETSP1137-20121227|5321_1 280 VVQQLIQGLVIALVTYLIAY-WLMGLNGPFMLFVLTFwASAQAISGIAFLLGVAVSDVETATALSPLILV 348
                 33445778889998877766.688999*****9876515566666789***************9998864 PP

>> TIGR03411  urea_trans_UrtD: urea ABC transporter, ATP-binding protein UrtD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.0   2.1e-06   0.00016     144     197 ..      18      71 ..      13     108 .. 0.78

  Alignments for each domain:
  == domain 1    score: 19.3 bits;  conditional E-value: 2.1e-06
   TIGR03411 144 LshGqkqwLeigmllvqepkllllDePvaGmtdeetektaellkelakersvvv 197
                 +s G+k++  i++ lv++pkl +lDeP++G+ +   +++ + l+ l+++   v+
  MMETSP1137-20121227|5321_1  18 VSGGEKKRTAIAVELVKQPKLCFLDEPTSGLDSYAANSVVKSLRVLSQRGCCVL 71 
                 689**********************************99999999987644333 PP

>> TIGR01193  bacteriocin_ABC: ABC-type bacteriocin transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.0   4.7e-06   0.00035     611     660 ..      17      66 ..       8      89 .. 0.92

  Alignments for each domain:
  == domain 1    score: 17.0 bits;  conditional E-value: 4.7e-06
   TIGR01193 611 sisgGqkqrlalarallsdskvlildestsnldlltekkivenllklkdk 660
                  +sgG k+r a+a  l+ + k+  lde ts ld    + +v+ l  l+++
  MMETSP1137-20121227|5321_1  17 GVSGGEKKRTAIAVELVKQPKLCFLDEPTSGLDSYAANSVVKSLRVLSQR 66 
                 58****************************************99888765 PP

>> TIGR03522  GldA_ABC_ATP: gliding motility-associated ABC transporter ATP-binding subunit GldA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.0   4.5e-06   0.00033     134     182 ..      18      66 ..      14      94 .. 0.80

  Alignments for each domain:
  == domain 1    score: 18.0 bits;  conditional E-value: 4.5e-06
   TIGR03522 134 lskGyrqrvGlakallhdPkvlildePttGldPnqlveirevikeiakd 182
                 +s G ++r  +a  l+ +Pk+  ldePt+Gld      + + ++ +++ 
  MMETSP1137-20121227|5321_1  18 VSGGEKKRTAIAVELVKQPKLCFLDEPTSGLDSYAANSVVKSLRVLSQR 66 
                 78999***************************86665555555555555 PP

>> TIGR01192  chvA: glucan exporter ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0   6.3e-06   0.00047     470     520 ..      16      66 ..       3      95 .. 0.83

  Alignments for each domain:
  == domain 1    score: 16.7 bits;  conditional E-value: 6.3e-06
   TIGR01192 470 nrlsggerqrlaiarailknapilvldeatsaldvetearvkdaidalrkn 520
                 + +sgge++r aia  ++k+  +  lde ts ld  +   v +++ +l++ 
  MMETSP1137-20121227|5321_1  16 KGVSGGEKKRTAIAVELVKQPKLCFLDEPTSGLDSYAANSVVKSLRVLSQR 66 
                 558*******************************99998888888888775 PP

>> TIGR00630  uvra: excinuclease ABC subunit A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   9.8e-06   0.00073     827     889 ..      16      75 ..       8      79 .. 0.81

  Alignments for each domain:
  == domain 1    score: 15.6 bits;  conditional E-value: 9.8e-06
   TIGR00630 827 ttLsGGeaqrvkLakeLskrstgktlyilDePttGLhfdDikkLlevlqrlvdkGntvvvieh 889
                 + +sGGe +r  +a eL k+     l  lDePt GL     + +++ l+ l ++G  v+   h
  MMETSP1137-20121227|5321_1  16 KGVSGGEKKRTAIAVELVKQP---KLCFLDEPTSGLDSYAANSVVKSLRVLSQRGCCVLCTIH 75 
                 468999999999999998875...588999999999999999999999999999988876555 PP

>> TIGR01247  drrB: daunorubicin resistance ABC transporter membrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   5.8   3.5e-05    0.0026     102     199 ..     281     381 ..     185     390 .. 0.90

  Alignments for each domain:
  == domain 1    score: 15.3 bits;  conditional E-value: 3.5e-05
   TIGR01247 102 ivaliqgaillalsfivae..lkvsgvipalvlallva.valsglGlaialrmssmeGfqlivallvlpllllsGalypiatlpawlqvlakinpltyavd 199
                 +  liqg ++  +++++a   + ++g    +vl++  +  a+sg+ + + + +s +e    +  l+++p +l++G +    ++p wl+++  +  l y ++
  MMETSP1137-20121227|5321_1 281 VQQLIQGLVIALVTYLIAYwlMGLNGPFMLFVLTFWASaQAISGIAFLLGVAVSDVETATALSPLILVPQILFAGFFIESDQIPVWLRWAQWLCVLKYNIN 381
                 5579**************98899999999999999875269*****************************************************9999886 PP

>> TIGR01186  proV: glycine betaine/L-proline transport ATP binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.6   0.0   0.00016     0.012     130     177 ..      18      65 ..      14      99 .. 0.86

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 0.00016
   TIGR01186 130 lsGGmqqrvGlaralaaePdlllmdeafsaldPlirdelqdelvklqk 177
                 +sGG ++r  +a  l  +P+l ++de+ s ld    +++ + l  l +
  MMETSP1137-20121227|5321_1  18 VSGGEKKRTAIAVELVKQPKLCFLDEPTSGLDSYAANSVVKSLRVLSQ 65 
                 79******************************9999888887777665 PP

>> TIGR00634  recN: DNA repair protein RecN
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   0.00029     0.021     436     503 ..      13      77 ..       8      80 .. 0.89

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 0.00029
   TIGR00634 436 pLakvASGGELSRvmLalkvvlsssaavttliFDEvDvGvsGktaqaiakkLaklsek.kQvlvvTHlp 503
                 pL k  SGGE  R  +a+++v   +        DE   G+   +a  + k L+ ls++ + vl+  H+p
  MMETSP1137-20121227|5321_1  13 PLMKGVSGGEKKRTAIAVELVKQPK----LCFLDEPTSGLDSYAANSVVKSLRVLSQRgCCVLCTIHQP 77 
                 999***************9986544....4556***********************87589******99 PP

>> TIGR00025  Mtu_efflux: ABC transporter efflux protein, DrrB family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   6.9   0.00013    0.0095      90     182 ..     278     369 ..     265     373 .. 0.73

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 0.00013
   TIGR00025  90 laavarvllatlillvi....gyvlGfrfrrgaltvla.lalvvivlGvalaaavslvatvtlqadvvlelveLviliflllsallvplnliPtwikp 182
                  ++v++ +++++i lv+     +++G +     l vl+ +a+  ++ G+a  +   +v  v+  +    +l +L++++++l+++  ++++ iP w+++
  MMETSP1137-20121227|5321_1 278 TFVVQQLIQGLVIALVTyliaYWLMGLNG-PFMLFVLTfWASAQAISGIAFLLG-VAVSDVETAT----ALSPLILVPQILFAGFFIESDQIPVWLRW 369
                 57777777777777765222268888877.345666662567777778775444.4555555555....689*************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (446 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       205  (0.0499756); expected 82.0 (0.02)
Passed bias filter:                      123  (0.0299854); expected 82.0 (0.02)
Passed Vit filter:                        62  (0.0151146); expected 4.1 (0.001)
Passed Fwd filter:                        56  (0.0136519); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              55  [number of targets reported over threshold]
# CPU time: 0.75u 0.14s 00:00:00.89 Elapsed: 00:00:00.80
# Mc/sec: 735.84
//
Query:       MMETSP1137-20121227|5322_1  [L=244]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (244 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       258  (0.0628961); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.12s 00:00:00.34 Elapsed: 00:00:00.31
# Mc/sec: 1038.88
//
Query:       MMETSP1137-20121227|5323_1  [L=219]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (219 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        50  (0.0121892); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.12s 00:00:00.31 Elapsed: 00:00:00.31
# Mc/sec: 932.44
//
Query:       MMETSP1137-20121227|5324_1  [L=233]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (233 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        74  (0.01804); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.12s 00:00:00.32 Elapsed: 00:00:00.38
# Mc/sec: 809.30
//
Query:       MMETSP1137-20121227|5325_1  [L=95]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.5e-14   52.0   0.0    1.7e-14   51.8   0.0    1.1  1  TIGR00296 TIGR00296: uncharacterized protein, PH0010 family


Domain annotation for each model (and alignments):
>> TIGR00296  TIGR00296: uncharacterized protein, PH0010 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.8   0.0   4.2e-18   1.7e-14      12      97 ..      16      95 .]       7      95 .] 0.85

  Alignments for each domain:
  == domain 1    score: 51.8 bits;  conditional E-value: 4.2e-18
   TIGR00296 12 lvryaraaieeyLeekkssrliedlkevfnekrgvfitlkkksnkeLrGCiGtpekvkplaealeeaaisaaleDprfsPvkkeel 97
                 v+y +++i  +L  +      ++   + + +  +f+t++k +  eLrGCiG+ ++  p+  +l+++a+ aa +D rf+P++++el
  MMETSP1137-20121227|5325_1 16 HVFYCFEVISAHLTRGA---KPPEPLFDTSVRCPLFVTWNKCGH-ELRGCIGCLKP-LPI-TSLKDYAMNAAFKDHRFPPMQESEL 95
                5899*********8776...2444445667899*********99.***********.787.58********************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (95 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        32  (0.00780107); expected 82.0 (0.02)
Passed bias filter:                       30  (0.00731351); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.13u 0.13s 00:00:00.26 Elapsed: 00:00:00.26
# Mc/sec: 482.27
//
Query:       MMETSP1137-20121227|5326_1  [L=653]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00069   17.1   0.0     0.0013   16.2   0.0    1.4  1  TIGR04017 WcaA: colanic acid biosynthesis glycosyl transferase WcaA
  ------ inclusion threshold ------
      0.044   10.6   0.0      0.067    9.9   0.0    1.2  1  TIGR03937 PgaC_IcaA: poly-beta-1,6 N-acetyl-D-glucosamine synthase


Domain annotation for each model (and alignments):
>> TIGR04017  WcaA: colanic acid biosynthesis glycosyl transferase WcaA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0   6.4e-07    0.0013      75     109 ..     252     286 ..     186     302 .. 0.77

  Alignments for each domain:
  == domain 1    score: 16.2 bits;  conditional E-value: 6.4e-07
   TIGR04017  75 avrnqailqakgeyitgiddddewtpnrlsvflah 109
                  +rn ai  a+g y+t  dddd   p+r+ v+l  
  MMETSP1137-20121227|5326_1 252 LLRNAAISAASGRYVTQWDDDDLHHPDRVRVMLHA 286
                 58*****************************9854 PP

>> TIGR03937  PgaC_IcaA: poly-beta-1,6 N-acetyl-D-glucosamine synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.0   3.3e-05     0.067      38     155 ..     182     292 ..     170     298 .. 0.79

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 3.3e-05
   TIGR03937  38 kleleevpkvsllvpcynegenveetisallklkypnleviainDGskDdtaeildklakkedrlrv.ihleenqGkaaalneglkaakseylvciDgDalldekalkylveelkenpk 155
                 +  +e++p+vs +  ++     +e +i    +++yp++e++++ D     ta+  ++ +++ dr  + +            n++++aa+  y++  D D l  ++ ++ ++++l+ + +
  MMETSP1137-20121227|5326_1 182 TECSESMPTVSAVCVSHGRPLMLERAIGLFWAQTYPKMELLILYDADDPATAKLAKEAKEHADRWCApLG--------LLRNAAISAASGRYVTQWDDDDLHHPDRVRVMLHALRCSRR 292
                 555788999***9999*999*************************9999999999999999887544122........23356677788888888888888888888888887776655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (653 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        84  (0.0204778); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.15s 00:00:00.55 Elapsed: 00:00:00.44
# Mc/sec: 1958.84
//
Query:       MMETSP1137-20121227|5328_1  [L=957]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (957 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        96  (0.0234032); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.57u 0.16s 00:00:00.73 Elapsed: 00:00:00.84
# Mc/sec: 1503.73
//
Query:       MMETSP1137-20121227|5329_1  [L=393]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (393 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       124  (0.0302292); expected 82.0 (0.02)
Passed bias filter:                      107  (0.0260848); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.18s 00:00:00.47 Elapsed: 00:00:00.34
# Mc/sec: 1525.64
//
Query:       MMETSP1137-20121227|5330_1  [L=191]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (191 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        78  (0.0190151); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.16s 00:00:00.35 Elapsed: 00:00:00.25
# Mc/sec: 1008.40
//
Query:       MMETSP1137-20121227|5331_1  [L=185]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (185 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        56  (0.0136519); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.13s 00:00:00.32 Elapsed: 00:00:00.65
# Mc/sec: 375.66
//
Query:       MMETSP1137-20121227|5332_1  [L=440]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.6e-06   24.4   0.1       0.06   10.0   0.0    3.4  4  TIGR01302 IMP_dehydrog: inosine-5'-monophosphate dehydrogenase
     0.0019   15.6   0.1     0.0077   13.7   0.1    2.0  2  TIGR00393 kpsF: sugar isomerase, KpsF/GutQ family
     0.0032   14.1   0.1      0.024   11.2   0.0    2.1  2  TIGR00400 mgtE: magnesium transporter


Domain annotation for each model (and alignments):
>> TIGR01302  IMP_dehydrog: inosine-5'-monophosphate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0      0.28   3.9e+02     159     187 ..     119     147 ..     110     160 .. 0.69
   2 !   10.0   0.0   4.4e-05      0.06     158     202 ..     239     283 ..     210     293 .. 0.81
   3 !    6.9   0.0   0.00038      0.53     152     198 ..     310     356 ..     289     370 .. 0.86
   4 !    3.1   0.0    0.0053       7.3     158     198 ..     395     435 ..     374     439 .. 0.87

  Alignments for each domain:
  == domain 1    score: -2.5 bits;  conditional E-value: 0.28
   TIGR01302 159 eeidleeaeevleekkieklpvvdkegel 187
                 +e + ++a ++++e++i+ lpv  +++ l
  MMETSP1137-20121227|5332_1 119 AEDTCSSALALITEHQISCLPVFRRKKSL 147
                 44456677777777777777777776665 PP

  == domain 2    score: 10.0 bits;  conditional E-value: 4.4e-05
   TIGR01302 158 keeidleeaeevleekkieklpvvdkegelvglvtvkdiekakef 202
                   + ++ +a ++l +k++ +++v d  g++ +l+t++d++ka + 
  MMETSP1137-20121227|5332_1 239 FDGATFLDAARILVSKRVPRVLVGDATGHVTNLITQSDVVKALHV 283
                 5567788999******************************98765 PP

  == domain 3    score: 6.9 bits;  conditional E-value: 0.00038
   TIGR01302 152 eevitvkeeidleeaeevleekkieklpvvdkegelvglvtvkdiek 198
                 +++ tv+ ++ + ea  v+    i+ +pvvd +++l++ ++++di  
  MMETSP1137-20121227|5332_1 310 RRIFTVQSDTRAIEAFCVMDYGDISAVPVVDADNRLLANISARDIRS 356
                 5678999999999999***************************9975 PP

  == domain 4    score: 3.1 bits;  conditional E-value: 0.0053
   TIGR01302 158 keeidleeaeevleekkieklpvvdkegelvglvtvkdiek 198
                 +++ +++++ + l+e +i+++ v +k+ e+v +++ +d++ 
  MMETSP1137-20121227|5332_1 395 EMHHTFKDVLQTLYELRIHHVWVTNKRREVVYVLALRDVVS 435
                 56678999*****************************9975 PP

>> TIGR00393  kpsF: sugar isomerase, KpsF/GutQ family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   0.1   5.7e-06    0.0077     162     265 ..     230     347 ..     222     350 .. 0.74
   2 ?   -2.2   0.0       0.4   5.5e+02     173     204 ..     398     429 ..     381     434 .. 0.73

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 5.7e-06
   TIGR00393 162 qtddlPlva.ktaslkdallelsekrlGlavvvdeneqlkGvltdGdlrr.allgg.....galkkevkdvmtlggk.......tlksdallveakellkkrkitslvvvddenkllG 265
                 +++  P ++   a++ da   l  kr+  ++v d+  +++ ++t  d+ + + ++      + l +++ ++  l  +       t++sd++++ea  ++    i +++vvd +n+ll 
  MMETSP1137-20121227|5332_1 230 RRKRAPVMLfDGATFLDAARILVSKRVPRVLVGDATGHVTNLITQSDVVKaLHVNLdkldpKILSRPISKFRRLRKQeeprrifTVQSDTRAIEAFCVMDYGDISAVPVVDADNRLLA 347
                 4444665441678999**999**************************9986444440111155677777776543321222333689****************************986 PP

  == domain 2    score: -2.2 bits;  conditional E-value: 0.4
   TIGR00393 173 aslkdallelsekrlGlavvvdeneqlkGvlt 204
                  ++kd+l  l e r+  + v +++++++ vl+
  MMETSP1137-20121227|5332_1 398 HTFKDVLQTLYELRIHHVWVTNKRREVVYVLA 429
                 46778888888888888888887777777765 PP

>> TIGR00400  mgtE: magnesium transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.2   0.0   1.7e-05     0.024     212     256 ..     319     363 ..     287     386 .. 0.82
   2 ?    0.4   0.1     0.033        45     143     189 ..     393     434 ..     389     437 .. 0.77

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 1.7e-05
   TIGR00400 212 qdqeevarliqkydflavPvvdeenrlvGivtvddiidvveeeat 256
                 +   e   +++  d+ avPvvd +nrl+  +   di  ++ e+++
  MMETSP1137-20121227|5332_1 319 TRAIEAFCVMDYGDISAVPVVDADNRLLANISARDIRSIIGEDSD 363
                 4444555667777***********************999988765 PP

  == domain 2    score: 0.4 bits;  conditional E-value: 0.033
   TIGR00400 143 elkedytvkkaldkirrvaksaesiyvlyvtneskrLkGvlslrdLi 189
                 +l+ ++t k+ l+ + ++      i+ ++vtn+ ++++ vl lrd++
  MMETSP1137-20121227|5332_1 393 SLEMHHTFKDVLQTLYEL-----RIHHVWVTNKRREVVYVLALRDVV 434
                 556666666666555544.....69999*****************87 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (440 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        76  (0.0185275); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.36u 0.11s 00:00:00.47 Elapsed: 00:00:00.56
# Mc/sec: 1018.86
//
Query:       MMETSP1137-20121227|5333_1  [L=437]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0078   13.9   1.0     0.0078   13.9   0.7    3.0  3  TIGR04032 toxin_SdpC: antimicrobial peptide, SdpC family


Domain annotation for each model (and alignments):
>> TIGR04032  toxin_SdpC: antimicrobial peptide, SdpC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   5.1      0.14   5.9e+02     107     143 ..     151     188 ..     129     205 .. 0.51
   2 !   13.9   0.7   1.9e-06    0.0078      59     142 ..     265     348 ..     263     355 .. 0.92
   3 ?   -1.6   0.9      0.11   4.6e+02     100     137 ..     384     420 ..     376     427 .. 0.68

  Alignments for each domain:
  == domain 1    score: -2.0 bits;  conditional E-value: 0.14
   TIGR04032 107 vtgeanlvavvavaa.vlavvvvaaVAvatvalaavav 143
                  t+ a+l a va +a ++ ++ va+VA+ +  +a++a 
  MMETSP1137-20121227|5333_1 151 ATPTAGLAAPVAPVApMAPAAPVANVAAVAATAATAAT 188
                 44444444433333302223334444444433333331 PP

  == domain 2    score: 13.9 bits;  conditional E-value: 1.9e-06
   TIGR04032  59 kdPayfdelkeavrskDplkvdealtkggellqeaaaedeaatskdgkvtgeanlvavvavaavlavvvvaaVAvatvalaava 142
                 k +++fd+l e+v+     k ++ +++ +++  e + e+ + ++  g    +a++v +v+++a++a+v  aaVA      + v+
  MMETSP1137-20121227|5333_1 265 KTSSFFDTLDEEVETDGARKGRAFMQEMRKVDAETFGEELIRDRRGGGAGVDAGAVTAVDAEAAVAAVDMAAVATXXAXXVLVV 348
                 6799**************************9999999989*********************************99888777754 PP

  == domain 3    score: -1.6 bits;  conditional E-value: 0.11
   TIGR04032 100 atskdgkvtgeanlvavvavaavlavvvvaaVAvatva 137
                  ++++g +++ea++  ++a+ a++a +  +a A+a++a
  MMETSP1137-20121227|5333_1 384 GDMASGYGDEEAAATGEAAA-AGAATAPTTAGAGAAEA 420
                 55666666777777766655.77777777888877765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (437 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       115  (0.0280351); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.32u 0.18s 00:00:00.50 Elapsed: 00:00:00.46
# Mc/sec: 1253.90
//
Query:       MMETSP1137-20121227|5334_1  [L=518]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (518 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       211  (0.0514383); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.14s 00:00:00.49 Elapsed: 00:00:00.70
# Mc/sec: 976.72
//
Query:       MMETSP1137-20121227|5336_1  [L=203]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.6e-19   66.1   0.0      1e-18   65.7   0.0    1.2  1  TIGR02452 TIGR02452: TIGR02452 family protein


Domain annotation for each model (and alignments):
>> TIGR02452  TIGR02452: TIGR02452 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.7   0.0   2.5e-22     1e-18       2     118 ..      50     165 ..      49     195 .. 0.84

  Alignments for each domain:
  == domain 1    score: 65.7 bits;  conditional E-value: 2.5e-22
   TIGR02452   2 iaeetlkilnagkYrtddtekvelaeeleraiqgt.klyspeeeevlklepakartelkvvnestleaaeelkeseiagevav.LNFAsaknPGGgflnGAkAqEEslara.SalYkcll 118
                 +a+e  +i++ g Y + +t   e + +++    +t ++ +     +++l p+++ t++ v n  t+ a++ l   ++ ++ av LNFA+a+ PGGg+lnGA+AqEE+l+r    lY++l 
  MMETSP1137-20121227|5336_1  50 VAQENYQIVQRGAYLNLST-GQECKVFIGPDWPNTtHVLQSG---GQRLRPRFKTTRICVANVDTASAMRALWSAGVGTDAAVaLNFANAHHPGGGYLNGAQAQEEDLCRLmPHLYTSLR 165
                 89************99877.4456666665555540555555...9***************************88888777654**************************6268999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (203 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        83  (0.020234); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.19u 0.17s 00:00:00.36 Elapsed: 00:00:00.39
# Mc/sec: 687.02
//
Query:       MMETSP1137-20121227|5337_1  [L=200]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (200 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        87  (0.0212092); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.15s 00:00:00.32 Elapsed: 00:00:00.43
# Mc/sec: 613.90
//
Query:       MMETSP1137-20121227|5338_1  [L=57]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        27  (0.00658216); expected 82.0 (0.02)
Passed bias filter:                       22  (0.00536324); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.13s 00:00:00.26 Elapsed: 00:00:00.32
# Mc/sec: 235.11
//
Query:       MMETSP1137-20121227|5339_1  [L=77]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (77 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        50  (0.0121892); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.18s 00:00:00.28 Elapsed: 00:00:00.48
# Mc/sec: 211.73
//
Query:       MMETSP1137-20121227|5340_1  [L=564]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.1e-09   35.3   0.0    8.1e-09   32.5   0.0    2.0  2  TIGR00475 selB: selenocysteine-specific translation elongation factor
    0.00011   18.9   0.0    0.00019   18.2   0.0    1.2  1  TIGR00487 IF-2: translation initiation factor IF-2
      0.001   16.0   0.0      0.038   10.8   0.0    2.3  2  TIGR03594 GTPase_EngA: ribosome-associated GTPase EngA
     0.0016   15.9   0.2     0.0025   15.2   0.1    1.2  1  TIGR02211 LolD_lipo_ex: lipoprotein releasing system, ATP-binding protein
     0.0024   14.7   0.2     0.0057   13.4   0.1    1.6  1  TIGR03156 GTP_HflX: GTP-binding protein HflX
     0.0026   14.1   0.0     0.0044   13.3   0.0    1.3  1  TIGR00503 prfC: peptide chain release factor 3
     0.0028   14.1   0.4     0.0038   13.7   0.3    1.1  1  TIGR00955 3a01204: pigment precursor permease
     0.0029   14.0   0.0     0.0072   12.6   0.0    1.5  1  TIGR00483 EF-1_alpha: translation elongation factor EF-1, subunit alpha
     0.0062   13.4   0.1     0.0091   12.8   0.1    1.2  1  TIGR02857 CydD: thiol reductant ABC exporter, CydD subunit
  ------ inclusion threshold ------
      0.012   13.2   0.0      0.031   11.9   0.0    1.6  1  TIGR00231 small_GTP: small GTP-binding protein domain
      0.013   12.9   0.0       0.02   12.2   0.0    1.3  1  TIGR03608 L_ocin_972_ABC: putative bacteriocin export ABC transporter, lactococcin 972 group
      0.032   11.1   0.0      0.047   10.6   0.0    1.1  1  TIGR00450 mnmE_trmE_thdF: tRNA modification GTPase TrmE


Domain annotation for each model (and alignments):
>> TIGR00475  selB: selenocysteine-specific translation elongation factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.5   0.0   2.4e-11   8.1e-09      48     128 ..     272     353 ..     266     361 .. 0.89
   2 ?   -0.1   0.0      0.18        60     140     182 ..     463     505 ..     433     509 .. 0.78

  Alignments for each domain:
  == domain 1    score: 32.5 bits;  conditional E-value: 2.4e-11
   TIGR00475  48 edkvlgliDvPGHekflknalagvggi..daalLvvdadeGvkaqtkEHLavlkllgikelivvltKaDrvdeeevkevEeel 128
                   k ++l+D  G e+flk+ l g+++   d+alL v ad G+   t+ H+ ++    ++ ++++++K D  de +++    +l
  MMETSP1137-20121227|5340_1 272 ATKLITLLDLCGQERFLKTTLFGLTAHvpDYALLCVGADAGISETTRLHVSLAAGXRLP-IVAIISKSDASDESRIEALTAQL 353
                 45889*****************99763359*****************************.9*************998876665 PP

  == domain 2    score: -0.1 bits;  conditional E-value: 0.18
   TIGR00475 140 nakivkvsAktGqGieeLkkelknLlesldakdkqkplrlaiD 182
                  + ++ vsA+tG G+  L + l++L+ +     +++pl l +D
  MMETSP1137-20121227|5340_1 463 TTPVLAVSARTGXGLPLLIQLLHRLPGRDWSFRRREPLLLSVD 505
                 566889*******************998777788888888887 PP

>> TIGR00487  IF-2: translation initiation factor IF-2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.0   5.5e-07   0.00019     132     201 ..     271     342 ..     266     358 .. 0.84

  Alignments for each domain:
  == domain 1    score: 18.2 bits;  conditional E-value: 5.5e-07
   TIGR00487 132 edkkkitflDtPGheaf..tsmrarGakvtDivvlvvaadDGvkpqtieaiehakaanvPiivainkiDkpe 201
                 +  k it+lD  G e f  t++    a+v D ++l v ad G+ + t   ++ a     Pi+ +i k D  +
  MMETSP1137-20121227|5340_1 271 QATKLITLLDLCGQERFlkTTLFGLTAHVPDYALLCVGADAGISETTRLHVSLAAGXRLPIVAIISKSDASD 342
                 45679************666777788*****************************************99754 PP

>> TIGR03594  GTPase_EngA: ribosome-associated GTPase EngA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.8   0.0   0.00011     0.038     166     195 ..     181     210 ..     139     213 .. 0.73
   2 ?    2.5   0.0     0.036        12     261     325 ..     303     366 ..     296     376 .. 0.84

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 0.00011
   TIGR03594 166 eeeeeeeeepikiaiiGrpNvGKStLvNal 195
                 ++++e  +e++++a+iG   +GKS+Lv  l
  MMETSP1137-20121227|5340_1 181 QQHSECAKEEVRLALIGATGAGKSSLVGVL 210
                 4444555678****************9766 PP

  == domain 2    score: 2.5 bits;  conditional E-value: 0.036
   TIGR03594 261 vllvlDategiseqDlkiaglileegkalvivvNKwDlvkdekeleelkkeleeklkflkfapiv 325
                 +ll + a +gise     ++l++    ++v ++ K D+  de+++e+l+ +l + ++ l+  p +
  MMETSP1137-20121227|5340_1 303 ALLCVGADAGISETTRLHVSLAAGXRLPIVAIISKSDAS-DESRIEALTAQLGSLFSSLALPPPL 366
                 678888999999999999999999999***********9.9999999999999888877766655 PP

>> TIGR02211  LolD_lipo_ex: lipoprotein releasing system, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.1   7.4e-06    0.0025      20      87 ..     178     248 ..     164     249 .. 0.81

  Alignments for each domain:
  == domain 1    score: 15.2 bits;  conditional E-value: 7.4e-06
   TIGR02211  20 vlkgvsleiekgel.vaivGssGsGkstllhll..ggldkptsGevllkGkelsklssneraklrnkklGf 87 
                 vl + + e  k e+ +a++G++G+Gks l+ +l  ggld+      +l  ++ ++l s +++++  + lGf
  MMETSP1137-20121227|5340_1 178 VLVQQHSECAKEEVrLALIGATGAGKSSLVGVLamGGLDNGQGSARTLVMRHAHELESGKTSSISQQVLGF 248
                 555555555666643799***********9886448****99888899999*******************9 PP

>> TIGR03156  GTP_HflX: GTP-binding protein HflX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.1   1.7e-05    0.0057     114     210 ..     105     211 ..      99     218 .. 0.64

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 1.7e-05
   TIGR03156 114 lqVelAqlkyllprlvrkgthlsrqkgGiGtrGpGEtklEtdrRlirerikklkkelekvekqr.....e.....eqrkkrkksevptvalvGYTNaGKstllnalt 210
                 lq  + qlky+l+   ++       +   ++rG G   lE+   ++r+  ++l++e++ v++++     +     +q+++   +e +++al+G T aGKs+l+  l+
  MMETSP1137-20121227|5340_1 105 LQQLVTQLKYRLAEGGGAAVYEIGVEDDGSLRGIGAADLEASLATLRRMCSQLHAEMTIVQQRQvcdnrHvaevlVQQHSECAKEEVRLALIGATGAGKSSLVGVLA 211
                 5555556666555443333222222223358***********99999999999999988776541111121111112333344567899*************98875 PP

>> TIGR00503  prfC: peptide chain release factor 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   0.0   1.3e-05    0.0044      79     152 ..     273     348 ..     268     354 .. 0.91

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 1.3e-05
   TIGR00503  79 dklvnlldtpGhedfsedtyrtltav..dsalmvidaakGveertrkllevtrlrdlpiltflnkldrdirdplel 152
                  kl+ lld  G e f + t   lta   d al+ + a  G+ e tr  + ++    lpi++++ k d    + +e 
  MMETSP1137-20121227|5340_1 273 TKLITLLDLCGQERFLKTTLFGLTAHvpDYALLCVGADAGISETTRLHVSLAAGXRLPIVAIISKSDASDESRIEA 348
                 689********************995559*************************************9988777775 PP

>> TIGR00955  3a01204: pigment precursor permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   0.3   1.1e-05    0.0038      21      84 ..     160     223 ..     145     245 .. 0.75

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 1.1e-05
   TIGR00955  21 kllvkrleealarkkpekellknvsGvaksGellAvlGsSGaGKtTLlnalafrsekglkvsgd 84 
                 ++++ ++++++ +++    l+++ s  ak+   lA++G+ GaGK+ L+ +la+    + ++s+ 
  MMETSP1137-20121227|5340_1 160 EMTIVQQRQVCDNRHVAEVLVQQHSECAKEEVRLALIGATGAGKSSLVGVLAMGGLDNGQGSAR 223
                 444455555655666788899999999999999*******************988777777554 PP

>> TIGR00483  EF-1_alpha: translation elongation factor EF-1, subunit alpha
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.6   0.0   2.1e-05    0.0072       5     172 ..     188     357 ..     185     365 .. 0.75

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 2.1e-05
   TIGR00483   5 kehlnvafighvdsgkstlvgrll...yeagaiderlleklkkeaeekgkasfefayvldklkeerergvtidvahkk...fetdkyevtivdapghrdfiknmitg..asqadaavlvvavddgelevqpqtrehvllartlgikqliva.inkmdsvnydeekfeelkkevsell 172
                 ke + +a+ig   +gks+lvg l    ++ g+ + r+l   +    e gk+s   + vl   +         d a +     e     +t++d  g   f+k  + g  a   d a+l v +d g   ++  tr hv la   g +  iva i k d+   de++ e+l  ++ +l+
  MMETSP1137-20121227|5340_1 188 KEEVRLALIGATGAGKSSLVGVLAmggLDNGQGSARTLVMRHAHELESGKTSSISQQVLGFGEGGAMLNWDDDFAPTPaelCEQATKLITLLDLCGQERFLKTTLFGltAHVPDYALLCVGADAG---ISETTRLHVSLAA--GXRLPIVAiISKSDA--SDESRIEALTAQLGSLF 357
                 88999****************99733347888888888855566678899999888898877666666667777765411145556679***************999434567999999998888...999******9986..666666661567775..47888888877776665 PP

>> TIGR02857  CydD: thiol reductant ABC exporter, CydD subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.8   0.1   2.7e-05    0.0091     338     380 ..     180     223 ..     143     247 .. 0.72

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 2.7e-05
   TIGR02857 338 lkevsltvepgelvalvGaSGaGKstllklll.gfvepteGail 380
                 +++ s  ++   ++al+Ga GaGKs+l+ +l+ g ++  +G+ +
  MMETSP1137-20121227|5340_1 180 VQQHSECAKEEVRLALIGATGAGKSSLVGVLAmGGLDNGQGSAR 223
                 56666667778899***************996466666666654 PP

>> TIGR00231  small_GTP: small GTP-binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   8.9e-05     0.031       3     140 ..     190     361 ..     188     374 .. 0.81

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 8.9e-05
   TIGR00231   3 eikivivGhvdvGKstLlnsllknkisiteskpgvtrdyvteqieedGkt...................................ykvnllDTaGqedfdairrlyvreverslevvdivilvldveeglekqtkeiiheakkkgvpiilvvnKiDlkd.....dlktkvkslfakln 140
                 e++++++G  ++GKs+L   l+         ++  t  ++ + + e Gkt                                   + ++llD+ Gqe+f     l ++     + v d ++l + ++ g  + t+     a     pi+  ++K D  d     +l  + +slf+ l+
  MMETSP1137-20121227|5340_1 190 EVRLALIGATGAGKSSLVGVLAMGG-LDNGQGSARTLVMRHAHELESGKTssisqqvlgfgeggamlnwdddfaptpaelceqatKLITLLDLCGQERF-----LKTTLFGLTAHVPDYALLCVGADAGISETTRLHVSLAAGXRLPIVAIISKSDASDesrieALTAQLGSLFSSLA 361
                 67899****************9887.4444444444444444466899999*********************************999************.....55555566678999999999999999888888888888899999999999999998777777777777776665 PP

>> TIGR03608  L_ocin_972_ABC: putative bacteriocin export ABC transporter, lactococcin 972 group
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0     6e-05      0.02      26      80 ..     192     248 ..     167     249 .. 0.78

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 6e-05
   TIGR03608  26 lvaivGesGsGKstlLnilgl..lekkdsgkvilegkekaklkskkaskllreklgy 80 
                  +a++G  G+GKs l+ +l++  l++ +    +l  +++++l+s k+s++ ++ lg+
  MMETSP1137-20121227|5340_1 192 RLALIGATGAGKSSLVGVLAMggLDNGQGSARTLVMRHAHELESGKTSSISQQVLGF 248
                 47**************99764338887777777778888899999999999999997 PP

>> TIGR00450  mnmE_trmE_thdF: tRNA modification GTPase TrmE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   0.00014     0.047     190     229 ..     172     210 ..     153     214 .. 0.73

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 0.00014
   TIGR00450 190 iaelkdllnsrkkleklkdglklaivGktNvGKSSLlNal 229
                   ++ ++l  + + e  k+ ++la++G t +GKSSL+ +l
  MMETSP1137-20121227|5340_1 172 NRHVAEVLVQQ-HSECAKEEVRLALIGATGAGKSSLVGVL 210
                 44555666644.569999******************8765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (564 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       197  (0.0480254); expected 82.0 (0.02)
Passed bias filter:                      165  (0.0402243); expected 82.0 (0.02)
Passed Vit filter:                        59  (0.0143832); expected 4.1 (0.001)
Passed Fwd filter:                        12  (0.0029254); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.57u 0.22s 00:00:00.78 Elapsed: 00:00:01.02
# Mc/sec: 729.82
//
Query:       MMETSP1137-20121227|5341_1  [L=170]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.016   13.5   0.3      0.025   12.9   0.2    1.4  1  TIGR02267 TIGR02267: Myxococcus xanthus paralogous family TIGR02267


Domain annotation for each model (and alignments):
>> TIGR02267  TIGR02267: Myxococcus xanthus paralogous family TIGR02267
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.2     6e-06     0.025       8      78 ..      50     120 ..      44     149 .. 0.83

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 6e-06
   TIGR02267   8 dpirelarrvlreGeplvltdevralllrsarevais....eadvtaalasdvsalallkeisrrireGsrrlsr 78 
                 + +r+la+rv       vl++e  +ll    r+v  +    ead  +a a+   ala  ++ ++r+ eG+ r+  
  MMETSP1137-20121227|5341_1  50 QGVRALAQRVDG----DVLSQEREELLPVCERDVRAHrrggEADYASASAELKHALAHGHAAAERVGEGAPRVPY 120
                 679*******76....4899**************8863333678889999999*****************99854 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (170 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        71  (0.0173086); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.17u 0.13s 00:00:00.30 Elapsed: 00:00:00.40
# Mc/sec: 560.95
//
Query:       MMETSP1137-20121227|5343_1  [L=343]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (343 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        68  (0.0165773); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.16s 00:00:00.41 Elapsed: 00:00:00.26
# Mc/sec: 1741.24
//
Query:       MMETSP1137-20121227|5344_1  [L=94]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (94 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        22  (0.00536324); expected 82.0 (0.02)
Passed bias filter:                       22  (0.00536324); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.14s 00:00:00.30 Elapsed: 00:00:00.37
# Mc/sec: 335.32
//
Query:       MMETSP1137-20121227|5345_1  [L=527]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     2e-106  354.2   0.0   2.3e-106  354.0   0.0    1.0  1  TIGR00562 proto_IX_ox: protoporphyrinogen oxidase
    4.4e-10   37.3   0.1      9e-05   19.8   0.2    3.1  3  TIGR03467 HpnE: squalene-associated FAD-dependent desaturase
    1.9e-08   31.3   0.0    3.2e-08   30.6   0.0    1.4  1  TIGR02731 phytoene_desat: phytoene desaturase
    1.9e-08   31.3   0.1    7.5e-08   29.3   0.0    1.8  2  TIGR02734 crtI_fam: phytoene desaturase
    1.1e-06   25.7   0.0    1.6e-06   25.2   0.0    1.2  1  TIGR00031 UDP-GALP_mutase: UDP-galactopyranose mutase
    6.7e-05   20.5   1.0    9.8e-05   20.0   0.2    1.6  2  TIGR02032 GG-red-SF: geranylgeranyl reductase family
    0.00061   16.4   0.0       0.02   11.4   0.0    2.0  2  TIGR02733 desat_CrtD: C-3',4' desaturase CrtD
     0.0038   12.8   0.0     0.0051   12.4   0.0    1.1  1  TIGR01372 soxA: sarcosine oxidase, alpha subunit family
     0.0056   13.3   0.1     0.0083   12.7   0.1    1.2  1  TIGR01813 flavo_cyto_c: flavocytochrome c
     0.0079   13.3   0.2      0.021   11.9   0.2    1.5  2  TIGR00292 TIGR00292: thiazole biosynthesis enzyme
  ------ inclusion threshold ------
      0.013   12.4   0.2      0.019   11.8   0.1    1.2  1  TIGR03197 MnmC_Cterm: tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain
      0.019   11.9   0.3      0.028   11.3   0.2    1.2  1  TIGR02352 thiamin_ThiO: glycine oxidase ThiO
      0.022   11.5   0.4      0.044   10.5   0.2    1.5  2  TIGR02732 zeta_caro_desat: carotene 7,8-desaturase
      0.047   10.3   0.0      0.067    9.7   0.0    1.2  1  TIGR01377 soxA_mon: sarcosine oxidase, monomeric form


Domain annotation for each model (and alignments):
>> TIGR00562  proto_IX_ox: protoporphyrinogen oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  354.0   0.0    8e-109  2.3e-106       4     469 ..      45     515 ..      42     516 .. 0.94

  Alignments for each domain:
  == domain 1    score: 354.0 bits;  conditional E-value: 8e-109
   TIGR00562   4 kvvvvGgGisGLciayalekerpdvelvlvEakdRvGGkiyTrkesGyllEkGprtlleskegildllkdlGleavlvsidktdkrfvlknkgklvpvPski.selvkflLlslgkklraglmleeirkks..pgkdeSveefvrrrlGdevlenliepllsGiYagDvskLSlkrtfkklykaeqk..hgSlikgmrsaikktknlpkgkt.lndlskalGkdvlalakgLetlpeevekrlkekk.vkvvkgekvtklekr.ganetleakdG.vkvetdsvvltvpakkaaklLkelsesaskeldkiqsppvilVnlglPekdvidaelkgfgllvsrsnkkkilgvifssklfpnraPegkllltayiGgatdeeivelseeeiiniVkedLkkvlqisn...pkklevrkWeralPqfhvGydaileeakrkllesayegvflgGnslsgvgvpdciedgkeaalevlkfls 469
                 ++ vvG+GisG ++a++l+ e  +v + l Ea+d vGG+++ r    +++E Gp++++++   ++ +  +l + + lv  ++t + +v+ + g+l  +P+++  +l++f+ l+  +k+ragl++  ++ ++   + +eS+e+fv r+lG+e ++++i+p++sG+YagD++kLS++++ kk+++++     g+l+ g  ++ k+  + ++ +  +++ +     +++++++gL+tlp++v ++l+e    ++ k+ k+tk e++ g+  t+++++G  +v+++ vv t+pa+++  +L+ +  + ++ l++i++ppv++V + +P+ +    elkgfg l +rs+++++lg+i+ss+lfp+raPeg  ll++yiGg+ d ei +l+eeeii  V++  ++vl ++n   pk l+ + W+ a+Pq+  G+ ++lee++  + e+  +g++lgGn+ +gv+ +dc++ g+++a+ ++k+l+
  MMETSP1137-20121227|5345_1  45 DCLVVGSGISGSSLAHYLHSE--GVXVLLSEARDVVGGNVISRTDGEFIWEDGPNSFQPTPT-VMRTAYELNIADKLVFANPTLPPWVYFQ-GELYALPKNLpGDLLNFNXLTWPGKIRAGLGAVGLFLQPppENVEESIEQFVTRHLGEETFKRIIDPFVSGVYAGDPKKLSMRAALKKIFRLQTLgfNGALVPGAIERFKEIAQEKRDNPpDPKWPTYRAGELGSFREGLQTLPNAVAAELGESRvALSHKLVKLTKSESGnGYVATFDTPQGeRTVNAKTVVSTAPAHAIGSVLSAV-IPEASRLSEIYYPPVAAVTVAYPKSAFKSPELKGFGSLNPRSEGVRTLGTIWSSSLFPGRAPEGYNLLLNYIGGSRDPEIAKLTEEEIIAEVHKGCQQVLLKPNapqPKVLGCKLWPTAIPQYEFGHLELLEELN--EGEKRCPGLYLGGNYRTGVAFGDCVQYGYDQAQVIKKYLK 515
                 89*******************..*******************99888************999.****************************.*******986379*****************998887777325557**********************************************998622588**999988888775555555688888766555*******************99876999********9885489999******889**********************.89999***************************************************************************************************9999***************************..99************************************96 PP

>> TIGR03467  HpnE: squalene-associated FAD-dependent desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   0.2   3.1e-07     9e-05       2      43 ..      47      88 ..      46      91 .. 0.93
   2 !    6.4   0.0    0.0036         1     102     187 ..     138     223 ..     112     233 .. 0.88
   3 !    7.2   0.0    0.0019      0.57     223     303 ..     286     370 ..     261     379 .. 0.74

  Alignments for each domain:
  == domain 1    score: 19.8 bits;  conditional E-value: 3.1e-07
   TIGR03467  2 vvvGgGlAGLaAAveLaraGvrvtllEarrqlGGRarsfedg 43
                +vvG G++G + A  L ++Gv v l Ear  +GG + s +dg
  MMETSP1137-20121227|5345_1 47 LVVGSGISGSSLAHYLHSEGVXVLLSEARDVVGGNVISRTDG 88
                69*********************************9998775 PP

  == domain 2    score: 6.4 bits;  conditional E-value: 0.0036
   TIGR03467 102 aPlhlakgllrakglsladklalarlllalkrerlraaadetvaewLkakgqserlierlwepllvsaLNedperasaklaa.kVlr 187
                  P +l   ll+ + l++  k++++  +  l  +  +++ +e++++ ++++   e++++r+++p++ ++   dp++ s+++a  k++r
  MMETSP1137-20121227|5345_1 138 LPKNLPGDLLNFNXLTWPGKIRAGLGAVGLFLQPPPENVEESIEQFVTRHL-GEETFKRIIDPFVSGVYAGDPKKLSMRAALkKIFR 223
                 5666777899999*********************9*************887.99************************987514555 PP

  == domain 3    score: 7.2 bits;  conditional E-value: 0.0019
   TIGR03467 223 gevrlgtrvreleasaggiralve....aaeetlaadavvlAvpperaasllpe.edlaaklaalesspIttvhlrldrevklpap 303
                  +v+l++++ +l+ s+ g+   ++     +e t++a+ vv  +p + + s+l +    a +l+++ + p+++v + ++++  ++ p
  MMETSP1137-20121227|5345_1 286 SRVALSHKLVKLTKSESGNGYVATfdtpQGERTVNAKTVVSTAPAHAIGSVLSAvIPEASRLSEIYYPPVAAVTVAYPKSA-FKSP 370
                 567788888888877776655444345344555888888889999999999999666778999**************9988.6665 PP

>> TIGR02731  phytoene_desat: phytoene desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.6   0.0   1.1e-10   3.2e-08       3     137 ..      47     170 ..      45     223 .. 0.78

  Alignments for each domain:
  == domain 1    score: 30.6 bits;  conditional E-value: 1.1e-10
   TIGR02731   3 aiagaglaglsaakyladaghtpivleardvlggkvaawkdedgdwyetglhiffgaypnllqllkelniedrlqwkehslifaqpdkp.gelsrfdvpdlpaplnvvlailrnndmltweekikfalgllpaivr 137
                  + g+g++g s a+yl   g   ++ eardv+gg v +  d +  w e g    f   p +++   elni d+l       +fa p  p  ++ + ++  lp     +   l n + ltw+ ki+ +lg +  +++
  MMETSP1137-20121227|5345_1  47 LVVGSGISGSSLAHYLHSEGVXVLLSEARDVVGGNVISRTDGEFIW-EDGPNS-FQPTPTVMRTAYELNIADKL-------VFANPTLPpWVYFQGELYALPKN---LPGDLLNFNXLTWPGKIRAGLGAVGLFLQ 170
                 588*********************************9988777666.566665.6778**************97.......56666655156666666666654...4456778889*********9998876665 PP

>> TIGR02734  crtI_fam: phytoene desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.3   0.0   2.6e-10   7.5e-08       2      66 ..      47     112 ..      46     116 .. 0.92
   2 ?   -0.9   0.0      0.36   1.1e+02     216     275 ..     271     332 ..     269     346 .. 0.64

  Alignments for each domain:
  == domain 1    score: 29.3 bits;  conditional E-value: 2.6e-10
   TIGR02734   2 vViGaGlgGLAlAirLaaaGievtvlekrdkpGGRagvleedGfrfDtGP.tvitmPealeelfal 66 
                 +V+G+G++G +lA  L ++G+ v + e+rd +GG   + ++  f +  GP ++   P++++ +++l
  MMETSP1137-20121227|5345_1  47 LVVGSGISGSSLAHYLHSEGVXVLLSEARDVVGGNVISRTDGEFIWEDGPnSFQPTPTVMRTAYEL 112
                 7*************************************************4455689999999876 PP

  == domain 2    score: -0.9 bits;  conditional E-value: 0.36
   TIGR02734 216 Gtsalvealaklaedlggelrlna.eveeieteg.erataveledgerleadavvsnaDlvh 275
                 G+++l++a+a    + ++ l+++  + ++ e+ +   at  + + +++++a+ vvs+a  + 
  MMETSP1137-20121227|5345_1 271 GLQTLPNAVAAELGESRVALSHKLvKLTKSESGNgYVATFDTPQGERTVNAKTVVSTAPAHA 332
                 6777777777666655555554420223333333345566667778889********98775 PP

>> TIGR00031  UDP-GALP_mutase: UDP-galactopyranose mutase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.2   0.0   5.4e-09   1.6e-06       3      47 ..      45      89 ..      43     103 .. 0.89

  Alignments for each domain:
  == domain 1    score: 25.2 bits;  conditional E-value: 5.4e-09
   TIGR00031  3 dyiivGaGlsGivlaeilaklnkrvlvvekrnhiGGncydevdek 47
                d ++vG+G+sG+ la+ l   +  vl+ e r+ +GGn+  + d +
  MMETSP1137-20121227|5345_1 45 DCLVVGSGISGSSLAHYLHSEGVXVLLSEARDVVGGNVISRTDGE 89
                889**********************************99988876 PP

>> TIGR02032  GG-red-SF: geranylgeranyl reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   0.2   3.4e-07   9.8e-05       2      35 ..      45      78 ..      44      91 .. 0.91
   2 ?   -3.8   0.0       5.8   1.7e+03     120     143 ..     300     326 ..     281     333 .. 0.58

  Alignments for each domain:
  == domain 1    score: 20.0 bits;  conditional E-value: 3.4e-07
   TIGR02032  2 DvvvvGaGpaGssaAlrlakkGlrVlllekkelp 35
                D +vvG G++Gss+A +l ++G+ Vll e ++ +
  MMETSP1137-20121227|5345_1 45 DCLVVGSGISGSSLAHYLHSEGVXVLLSEARDVV 78
                99*************************9998765 PP

  == domain 2    score: -3.8 bits;  conditional E-value: 5.8
   TIGR02032 120 ed..ekvkvevred.ekkevtakivig 143
                  +  +  +++ ++   +++v+ak v+ 
  MMETSP1137-20121227|5345_1 300 SEsgNGYVATFDTPqGERTVNAKTVVS 326
                 333344444444444577888888875 PP

>> TIGR02733  desat_CrtD: C-3',4' desaturase CrtD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.4   0.0   6.7e-05      0.02       4      50 ..      46      92 ..      43      98 .. 0.86
   2 ?    2.8   0.0     0.027         8     232     300 ..     273     338 ..     265     373 .. 0.75

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 6.7e-05
   TIGR02733  4 vvviGaGiaGltaaallakrGlevtlleaaaqvGGCastfkrrgfif 50
                 +v+G+Gi+G   a  l  +G+ v l ea  +vGG       ++fi+
  MMETSP1137-20121227|5345_1 46 CLVVGSGISGSSLAHYLHSEGVXVLLSEARDVVGGNVISRTDGEFIW 92
                68*********************************876666666665 PP

  == domain 2    score: 2.8 bits;  conditional E-value: 0.027
   TIGR02733 232 qvlsdrlvealkkdggelllgqrveaietkeekaeakvvvdsrkkekeevkaddvvanlpaqsllelle 300
                 q+l +++++ l    +++ l++++ +++++e  + ++ + d+  + +++v+a+ vv + pa+++ ++l+
  MMETSP1137-20121227|5345_1 273 QTLPNAVAAELG--ESRVALSHKLVKLTKSESGNGYVATFDT-PQGERTVNAKTVVSTAPAHAIGSVLS 338
                 555555554443..468999********99998888888887.6778899**********999887775 PP

>> TIGR01372  soxA: sarcosine oxidase, alpha subunit family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.4   0.0   1.8e-05    0.0051     167     211 ..      42      86 ..      31     130 .. 0.89

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 1.8e-05
   TIGR01372 167 ahcDvLvvGaGpaGLaaAraAaraGarvilvdeqaeaGGsllsea 211
                    D LvvG+G +G + A+   ++G+ v+l + +  +GG++ s++
  MMETSP1137-20121227|5345_1  42 SSVDCLVVGSGISGSSLAHYLHSEGVXVLLSEARDVVGGNVISRT 86 
                 5689***********************************998876 PP

>> TIGR01813  flavo_cyto_c: flavocytochrome c
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.7   0.1   2.8e-05    0.0083       1      40 [.      45      83 ..      45      91 .. 0.92

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 2.8e-05
   TIGR01813  1 dvvvvGsGlAGlsaaleakkaglaevvvleKapviGGNsa 40
                d +vvGsG+ G s a  ++++g   v++ e  +v+GGN +
  MMETSP1137-20121227|5345_1 45 DCLVVGSGISGSSLAHYLHSEG-VXVLLSEARDVVGGNVI 83
                578*******************.9999***********76 PP

>> TIGR00292  TIGR00292: thiazole biosynthesis enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.9   0.2   7.1e-05     0.021      22      59 ..      44      81 ..      38      87 .. 0.91
   2 ?   -2.7   0.0         2   5.8e+02     227     254 .]     488     515 ..     486     515 .. 0.87

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 7.1e-05
   TIGR00292 22 sDviivGaGpsGLtaayylakeglkvvvlerklaiGGG 59
                 D ++vG+G sG + a+yl  eg+ v++ e +  +GG 
  MMETSP1137-20121227|5345_1 44 VDCLVVGSGISGSSLAHYLHSEGVXVLLSEARDVVGGN 81
                699***************************99999986 PP

  == domain 2    score: -2.7 bits;  conditional E-value: 2
   TIGR00292 227 glnrmGpifGgmllsGkkvaelileklk 254
                 g +r G  fG  +  G   a++i + lk
  MMETSP1137-20121227|5345_1 488 GNYRTGVAFGDCVQYGYDQAQVIKKYLK 515
                 789**********99*999999988775 PP

>> TIGR03197  MnmC_Cterm: tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.1   6.6e-05     0.019       2      34 ..      46      78 ..      45      82 .. 0.89

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 6.6e-05
   TIGR03197  2 vavIGaGiAgaalalsLarrGvqvtllekdekl 34
                 +v+G Gi+g++la+ L + Gv v l e+++ +
  MMETSP1137-20121227|5345_1 46 CLVVGSGISGSSLAHYLHSEGVXVLLSEARDVV 78
                58************************9988655 PP

>> TIGR02352  thiamin_ThiO: glycine oxidase ThiO
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.2   9.6e-05     0.028       2      31 ..      47      76 ..      46      82 .. 0.89

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 9.6e-05
   TIGR02352  2 lviGgGviGlsvAveLakrghkvtllekde 31
                lv+G G+ G+s+A++L ++g  v l e ++
  MMETSP1137-20121227|5345_1 47 LVVGSGISGSSLAHYLHSEGVXVLLSEARD 76
                7**********************9999875 PP

>> TIGR02732  zeta_caro_desat: carotene 7,8-desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.2   0.00015     0.044       4      45 ..      48      89 ..      45      95 .. 0.93
   2 ?   -3.3   0.0       2.3   6.8e+02     241     304 ..     293     352 ..     285     362 .. 0.65

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 0.00015
   TIGR02732  4 ivgaglaglatavelvdaghevelyesrsflggkvgswvdkd 45
                +vg+g++g + a  l  +g  v l e+r  +gg v s +d++
  MMETSP1137-20121227|5345_1 48 VVGSGISGSSLAHYLHSEGVXVLLSEARDVVGGNVISRTDGE 89
                89*********************************9988865 PP

  == domain 2    score: -3.3 bits;  conditional E-value: 2.3
   TIGR02732 241 kvkeikfekssdgetrvteliiskaeekkvikadayvaacdvpgikkllpkewrkfeefdkikk 304
                 k+  +k+ ks +g+ +v+    ++++++++++a + v++     i  +l     + + + +i++
  MMETSP1137-20121227|5345_1 293 KL--VKLTKSESGNGYVAT--FDTPQGERTVNAKTVVSTAPAHAIGSVLSAVIPEASRLSEIYY 352
                 44..444555556666664..5778888999999999888888888877776666666666665 PP

>> TIGR01377  soxA_mon: sarcosine oxidase, monomeric form
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.0   0.00023     0.067       2      34 ..      45      77 ..      44     100 .. 0.89

  Alignments for each domain:
  == domain 1    score: 9.7 bits;  conditional E-value: 0.00023
   TIGR01377  2 DvivvGaGvmGsaaayqLakrgkkvLLleqfdl 34
                D +vvG+G+ Gs+ a++L  +g+ vLL e  d+
  MMETSP1137-20121227|5345_1 45 DCLVVGSGISGSSLAHYLHSEGVXVLLSEARDV 77
                899************************998776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (527 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       150  (0.0365675); expected 82.0 (0.02)
Passed bias filter:                      150  (0.0365675); expected 82.0 (0.02)
Passed Vit filter:                        51  (0.012433); expected 4.1 (0.001)
Passed Fwd filter:                        14  (0.00341297); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.52u 0.14s 00:00:00.66 Elapsed: 00:00:00.74
# Mc/sec: 939.98
//
Query:       MMETSP1137-20121227|5346_1  [L=123]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.1e-05   21.9   0.0    2.9e-05   21.4   0.0    1.3  1  TIGR02349 DnaJ_bact: chaperone protein DnaJ


Domain annotation for each model (and alignments):
>> TIGR02349  DnaJ_bact: chaperone protein DnaJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   0.0   7.2e-09   2.9e-05     272     350 ..       4      87 ..       1      91 [. 0.84

  Alignments for each domain:
  == domain 1    score: 21.4 bits;  conditional E-value: 7.2e-09
   TIGR02349 272 evpisfvqailgeeievptleg.kvklkipag...tqsgevlrlkgkGvkklkskkrGdllvkvkvevPkk.lskeekelleel 350
                 ++++s+++a  g + +++ l+g  + l  +++   t +g   rl+g G+++ +  ++Gdl+v+++v++P+k +s e+ +ll+++
  MMETSP1137-20121227|5346_1   4 RLSLSLYEALTGFRRQIKLLDGqAIWLGAEPNsavTTPGMLRRLRGFGMPRFQAAGKGDLFVRFSVRFPEKpISGESAKLLKQV 87 
                 677888999999999999999965667766553447899999***************************987999999999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (123 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        51  (0.012433); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.15u 0.14s 00:00:00.29 Elapsed: 00:00:00.63
# Mc/sec: 257.69
//
Query:       MMETSP1137-20121227|5347_1  [L=381]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-11   42.2   0.1      2e-11   41.7   0.1    1.2  1  TIGR00406 prmA: ribosomal protein L11 methyltransferase
    8.8e-11   39.6   0.1    1.4e-10   38.9   0.1    1.3  1  TIGR03534 RF_mod_PrmC: protein-(glutamine-N5) methyltransferase, release factor-specific
    4.9e-08   30.2   0.1    7.3e-08   29.6   0.0    1.2  1  TIGR00536 hemK_fam: methyltransferase, HemK family
    8.6e-07   26.4   0.8    1.7e-06   25.4   0.1    1.7  2  TIGR02021 BchM-ChlM: magnesium protoporphyrin O-methyltransferase
    2.2e-06   25.3   0.1    3.5e-06   24.7   0.0    1.4  1  TIGR00537 hemK_rel_arch: putative methylase
    3.5e-06   24.3   0.0    5.7e-06   23.6   0.0    1.3  1  TIGR01983 UbiG: 3-demethylubiquinone-9 3-O-methyltransferase
    4.3e-05   20.8   0.1    6.9e-05   20.1   0.0    1.3  1  TIGR03533 L3_gln_methyl: protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific
    8.8e-05   20.6   0.1    0.00029   19.0   0.0    1.8  2  TIGR02469 CbiT: precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit
    0.00028   18.4   0.0    0.00045   17.8   0.0    1.2  1  TIGR00095 TIGR00095: RNA methyltransferase, RsmD family
    0.00037   17.5   0.1    0.00053   16.9   0.1    1.3  1  TIGR00692 tdh: L-threonine 3-dehydrogenase
     0.0072   13.5   0.3      0.015   12.4   0.2    1.5  1  TIGR01177 TIGR01177: TIGR01177 family protein
  ------ inclusion threshold ------
      0.015   12.9   0.0      0.041   11.5   0.0    1.7  2  TIGR02072 BioC: biotin biosynthesis protein BioC


Domain annotation for each model (and alignments):
>> TIGR00406  prmA: ribosomal protein L11 methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.7   0.1   5.8e-14     2e-11     153     224 ..     157     228 ..     150     275 .. 0.86

  Alignments for each domain:
  == domain 1    score: 41.7 bits;  conditional E-value: 5.8e-14
   TIGR00406 153 lesldlkdkkviDvGcGSGiLsiaalklgaakvvavDiDplavesarkNlelNqvsdllqvklenleqkieg 224
                 +  ld ++  v+++GcG G+++iaa++ gaa+v+  D D  a++ ar N++lN + + ++v   + +++++ 
  MMETSP1137-20121227|5347_1 157 HTALDVRGGAVLELGCGTGLVGIAAALAGAASVIVTDHDEAALQLARVNVDLNSLAEAVRVERLDWTEPEAS 228
                 678999999************************************************999987764444443 PP

>> TIGR03534  RF_mod_PrmC: protein-(glutamine-N5) methyltransferase, release factor-specific
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.9   0.1   4.1e-13   1.4e-10      90     176 ..     165     255 ..     151     282 .. 0.84

  Alignments for each domain:
  == domain 1    score: 38.9 bits;  conditional E-value: 4.1e-13
   TIGR03534  90 lkvlDlgtGsGaIalalakelpdakviavDiseeAlkvarkNakrlglke.veflksdlleal....eekgkfdlivsNPPYipeaekeele 176
                   vl+lg+G+G +++a a     a+vi +D +e+Al++ar N++ + l+e v++ + d++e+      + g fd +v+  P  +  ++e+l+
  MMETSP1137-20121227|5347_1 165 GAVLELGCGTGLVGIAAALA-GAASVIVTDHDEAALQLARVNVDLNSLAEaVRVERLDWTEPEasrvAALGPFDTVVASDPLYDVGQAEALS 255
                 469*************9887.89*************************999********9876555578899**999977766655655555 PP

>> TIGR00536  hemK_fam: methyltransferase, HemK family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.6   0.0   2.1e-10   7.3e-08     117     180 ..     166     228 ..     151     264 .. 0.89

  Alignments for each domain:
  == domain 1    score: 29.6 bits;  conditional E-value: 2.1e-10
   TIGR00536 117 hilDlgtGsGcIalalAleipnaeviavDistdalavaeeNaeklkleerveliqsnlleslak 180
                  +l+lg+G+G +++a Al+ + a+vi  D  + al++a+ N+  + l e v++ + ++ e+ a+
  MMETSP1137-20121227|5347_1 166 AVLELGCGTGLVGIAAALAGA-ASVIVTDHDEAALQLARVNVDLNSLAEAVRVERLDWTEPEAS 228
                 589****************99.************************************998776 PP

>> TIGR02021  BchM-ChlM: magnesium protoporphyrin O-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0       1.5   5.2e+02      42      90 ..      88     130 ..      79     134 .. 0.70
   2 !   25.4   0.1   5.1e-09   1.7e-06      51     157 ..     161     275 ..     147     304 .. 0.76

  Alignments for each domain:
  == domain 1    score: -2.3 bits;  conditional E-value: 1.5
   TIGR02021  42 ekllewlpkdslkGkkvlDAGCGtGllsielAkrGaivkavDiseklve 90 
                 + ++ wl     +   v+DA   +  + + +A +G + + v++++ lv 
  MMETSP1137-20121227|5347_1  88 QSVMPWLR---FHDADVVDA---AARIVAIMAGQGHHLQRVELADGLVR 130
                 55555555...445666666...45677778999999999999988886 PP

  == domain 2    score: 25.4 bits;  conditional E-value: 5.1e-09
   TIGR02021  51 dslkGkkvlDAGCGtGllsielAkrGa.ivkavDiseklvelarkraekedeaenveFevndl.....esle..gkfDavvalDvlihYpaed.iakalerlasltkesvvltfAP 157
                 d ++G  vl+ GCGtGl+ i  A  Ga  v   D  e+ ++lar + + +  ae v+ e  d        +   g fD+vva D l    +++ ++k++++l s  k+s  l +A 
  MMETSP1137-20121227|5347_1 161 D-VRGGAVLELGCGTGLVGIAAALAGAaSVIVTDHDEAALQLARVNVDLNSLAEAVRVERLDWtepeaSRVAalGPFDTVVASDPLYDVGQAEaLSKTIATLISPNKSSRALIVAH 275
                 3.7999*****************9996368899999999999998776665555555444443111113333469***********988776516799999999999887777765 PP

>> TIGR00537  hemK_rel_arch: putative methylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.7   0.0     1e-08   3.5e-06       9      66 ..     154     211 ..     147     269 .. 0.86

  Alignments for each domain:
  == domain 1    score: 24.7 bits;  conditional E-value: 1e-08
   TIGR00537   9 llleknlrelknddvleiGaGtGlvairlkekgk.kivatdinPfavkllkenaklnnv 66 
                  +l+ +l+ +++  vle+G GtGlv i+++  g+  ++ td + +a +l++ n  ln+ 
  MMETSP1137-20121227|5347_1 154 CVLHTALD-VRGGAVLELGCGTGLVGIAAALAGAaSVIVTDHDEAALQLARVNVDLNSL 211
                 45666775.66789****************999889******************99975 PP

>> TIGR01983  UbiG: 3-demethylubiquinone-9 3-O-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.6   0.0   1.7e-08   5.7e-06      47     146 ..     161     265 ..     141     281 .. 0.86

  Alignments for each domain:
  == domain 1    score: 23.6 bits;  conditional E-value: 1.7e-08
   TIGR01983  47 kleglkvlDvGcGgGllseslarlgae.vtgiDlseelievAklhakkdplk......kieyelksveelaeeekesfDvvlamEvlEHvadleeilkecaellkpg 146
                 +++g  vl++GcG Gl+  + a  ga+ v+  D  e +++ A++  + + l+      +++++  ++  +a+     fD v+a++ l  v + e++ k++a+l+ p+
  MMETSP1137-20121227|5347_1 161 DVRGGAVLELGCGTGLVGIAAALAGAAsVIVTDHDEAALQLARVNVDLNSLAeavrveRLDWTEPEASRVAAL--GPFDTVVASDPLYDVGQAEALSKTIATLISPN 265
                 566889*****************99988****************99999888766666777777777777665..78*************************99998 PP

>> TIGR03533  L3_gln_methyl: protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.0     2e-07   6.9e-05     124     182 ..     166     223 ..     154     259 .. 0.79

  Alignments for each domain:
  == domain 1    score: 20.1 bits;  conditional E-value: 2e-07
   TIGR03533 124 rvldlctGsGClaiaaaeafpeaevdavDisedaLevaeenieeyeledrveliqsdlf 182
                  vl+l +G+G ++iaaa a   a+v ++D  e aL++a+ n++  +l++ v++ + d  
  MMETSP1137-20121227|5347_1 166 AVLELGCGTGLVGIAAALA-GAASVIVTDHDEAALQLARVNVDLNSLAEAVRVERLDWT 223
                 69************99987.6789999***********************998877654 PP

>> TIGR02469  CbiT: precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0       2.6   8.9e+02      46      67 ..      68      89 ..      54     125 .. 0.62
   2 !   19.0   0.0   8.4e-07   0.00029      15      74 ..     160     217 ..     153     241 .. 0.75

  Alignments for each domain:
  == domain 1    score: -2.0 bits;  conditional E-value: 2.6
   TIGR02469 46 vyaierneealelieeNlrrfg 67
                ++++er+e+ + l e Nl    
  MMETSP1137-20121227|5347_1 68 LLGLERDEATAILREXNLTMQS 89
                5677888877777777776553 PP

  == domain 2    score: 19.0 bits;  conditional E-value: 8.4e-07
   TIGR02469  15 LrlkkgdvllDiGaGtGsvtieaarlvpkgrvyaierneealelieeNlrrfgvsnieiv 74 
                 L ++ g  +l+ G+GtG v+i aa  ++  +v+  + +e+al+l + N++ + + + + v
  MMETSP1137-20121227|5347_1 160 LDVR-GGAVLELGCGTGLVGIAAAL-AGAASVIVTDHDEAALQLARVNVDLNSLAEAVRV 217
                 5666.67899***********8775.567799*****************98854444333 PP

>> TIGR00095  TIGR00095: RNA methyltransferase, RsmD family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.0   1.3e-06   0.00045      50     165 ..     161     279 ..     156     296 .. 0.72

  Alignments for each domain:
  == domain 1    score: 17.8 bits;  conditional E-value: 1.3e-06
   TIGR00095  50 eivgakvLdlfaGsgalglEALsRgakkvvfveqdkkvaktlkeNlstlklskeqatvlndaeralavlakketvfdi.iylDPPfevklleailelllenkil..nekalivveeeee 165
                 ++ g++vL+l  G+g +g+ A   ga++v++ + d+++ +    N+++  l +   + + d +  +a   +  ++fd  +  DP ++v+++ea+ + + ++     +  aliv+++++ 
  MMETSP1137-20121227|5347_1 161 DVRGGAVLELGCGTGLVGIAAALAGAASVIVTDHDEAALQLARVNVDLNSLAEAVRVERLDWTEPEASRVAALGPFDTvVASDPLYDVGQAEALSKTIATLISPnkSSRALIVAHRDQA 279
                 678999*********************************9999998766655533333333333333344444467761567********99999888885443004456666666654 PP

>> TIGR00692  tdh: L-threonine 3-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.1   1.6e-06   0.00053     152     204 ..     156     204 ..     144     286 .. 0.86

  Alignments for each domain:
  == domain 1    score: 16.9 bits;  conditional E-value: 1.6e-06
   TIGR00692 152 vdtvlesdlaGesvlvsGaGpiGllavavakaaGasqvivsdkneyrlelakk 204
                 ++t+l  d+ G+ vl  G+G  Gl+++a a  aGa +viv+d++e  l+la+ 
  MMETSP1137-20121227|5347_1 156 LHTAL--DVRGGAVLELGCGT-GLVGIAAA-LAGAASVIVTDHDEAALQLARV 204
                 45554..678**********5.*****977.5799****************83 PP

>> TIGR01177  TIGR01177: TIGR01177 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.4   0.2   4.5e-05     0.015     182     241 ..     163     224 ..     154     262 .. 0.81

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 4.5e-05
   TIGR01177 182 egdrvlDPfcGTGgilIEAgLlGi.kviglDidekmveGariNLehYgied.fkvkrldakk 241
                 +g+ vl   cGTG + I A+L G+ +vi +D de+  + ar+N +   + +   v rld ++
  MMETSP1137-20121227|5347_1 163 RGGAVLELGCGTGLVGIAAALAGAaSVIVTDHDEAALQLARVNVDLNSLAEaVRVERLDWTE 224
                 688999999**************7368888*************9877766657777777655 PP

>> TIGR02072  BioC: biotin biosynthesis protein BioC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0       1.9   6.4e+02      40      58 ..     132     150 ..     128     162 .. 0.78
   2 ?   11.5   0.0   0.00012     0.041      37      80 ..     166     219 ..     155     265 .. 0.70

  Alignments for each domain:
  == domain 1    score: -2.2 bits;  conditional E-value: 1.9
   TIGR02072  40 diGcGtGiltrallkrfpq 58 
                  i cG Gi tr + + + +
  MMETSP1137-20121227|5347_1 132 KIRCGRGISTRVWPAAICA 150
                 577*******999776655 PP

  == domain 2    score: 11.5 bits;  conditional E-value: 0.00012
   TIGR02072  37 kvLdiGcGtGiltrallkrfpqaelialDiseemleqakkkls...........n 80 
                 +vL++GcGtG++  a  +   +a++i +D  e  l+ a+ ++            +
  MMETSP1137-20121227|5347_1 166 AVLELGCGTGLVGIAA-ALAGAASVIVTDHDEAALQLARVNVDlnslaeavrveR 219
                 79********666555.55555669999999999999987776644444444433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (381 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       175  (0.0426621); expected 82.0 (0.02)
Passed bias filter:                      108  (0.0263286); expected 82.0 (0.02)
Passed Vit filter:                        22  (0.00536324); expected 4.1 (0.001)
Passed Fwd filter:                        12  (0.0029254); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.35u 0.12s 00:00:00.47 Elapsed: 00:00:00.56
# Mc/sec: 898.00
//
Query:       MMETSP1137-20121227|5348_1  [L=161]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (161 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        82  (0.0199902); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.15s 00:00:00.34 Elapsed: 00:00:00.42
# Mc/sec: 505.96
//
Query:       MMETSP1137-20121227|5349_1  [L=529]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.1e-35  120.3   0.0      5e-35  119.0   0.0    1.5  2  TIGR01265 tyr_nico_aTase: tyrosine/nicotianamine aminotransferases
      3e-30  103.1   0.0    6.4e-30  102.1   0.0    1.4  1  TIGR01264 tyr_amTase_E: tyrosine aminotransferase
    7.6e-19   65.7   0.0    1.9e-14   51.2   0.0    2.2  2  TIGR03540 DapC_direct: LL-diaminopimelate aminotransferase
    2.7e-16   57.2   0.6    5.8e-12   43.0   0.0    2.2  2  TIGR03947 viomycin_VioD: capreomycidine synthase
    9.9e-15   52.1   0.0    1.3e-14   51.7   0.0    1.2  1  TIGR01141 hisC: histidinol-phosphate transaminase
    1.7e-14   51.3   0.0      4e-14   50.1   0.0    1.5  2  TIGR03538 DapC_gpp: succinyldiaminopimelate transaminase
    2.6e-13   47.4   0.0    1.8e-11   41.5   0.0    2.1  2  TIGR03542 DAPAT_plant: LL-diaminopimelate aminotransferase
    2.4e-12   44.4   0.0    3.7e-11   40.5   0.0    2.3  1  TIGR01140 L_thr_O3P_dcar: threonine-phosphate decarboxylase
    6.5e-12   43.0   0.1    2.4e-10   37.8   0.1    2.8  1  TIGR03539 DapC_actino: succinyldiaminopimelate transaminase
      3e-11   40.7   0.0    2.1e-09   34.6   0.0    2.2  1  TIGR03537 DapC: succinyldiaminopimelate transaminase
    1.1e-05   21.8   0.0    2.6e-05   20.6   0.0    1.6  2  TIGR03801 asp_4_decarbox: aspartate 4-decarboxylase


Domain annotation for each model (and alignments):
>> TIGR01265  tyr_nico_aTase: tyrosine/nicotianamine aminotransferases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.0       2.5   9.3e+02      20      45 ..      49      74 ..      40      89 .. 0.76
   2 !  119.0   0.0   1.4e-37     5e-35      62     399 ..     131     517 ..     110     520 .. 0.78

  Alignments for each domain:
  == domain 1    score: -3.7 bits;  conditional E-value: 2.5
   TIGR01265 20 vdslkkkpeeekpviklslGdPsvfg 45
                +d++++  ++ +p++  ++G+P + g
  MMETSP1137-20121227|5349_1 49 LDKAMQIESTGRPIVRCNIGNPQALG 74
                45555555666999999999998765 PP

  == domain 2    score: 119.0 bits;  conditional E-value: 1.4e-37
   TIGR01265  62 rsgkfngYapsvGvlaareavaeylskeleakleaddvvltsGcsqaielvie.alanag.aniLvPrPgfplYetlakalglevrkydllpekd...weidldele....alaDe..ktvalvvinPsnPcGsvfsrdHlekvvevaeklklliiaDEvYdklvfgd.........atfvp....lak.......laskvPvlslggiskrwl.vPGWrlGWlivvdpkgiledtvlqglkkllqlildpatlvqgAlpdil......ektpkeffek...kikvlkenaelvyeelkeipgltcvkPegamyllvklel..ellee.....ikdDvdFceklvkEesvillPgsalelen....ylRitltveksvleealeRikeFc 399
                 + +++ +Y+ s+Gv+  re++a++l+++   + +a d++lt G+s +++ +++ +la +g + +L P P +plY++l+++++    +y l  + +   w++ l++l+    +  D+  +  alv+inP+nP+G+  s + +++v+++a++ +l+++aDEvY++ v++d         ++f++    l++       las + ++s+ ++sk++    G r G+  +    g   +tv+  l+k+++  l ++ + q A+  i+      + ++++f  +   +++ l++ a  + + l ++pg+tc+  ega yl+ ++e+  +++e      +  D  +  kl++   ++++Pgs ++ ++    ++R+t+  ++ +l   +e i++F 
  MMETSP1137-20121227|5349_1 131 SIRSVGAYSDSQGVPVVREEIAKFLRQRDGCEASAGDIFLTDGASAGVRALMQcVLAVPGvDAVLAPSPVYPLYSALSTVMDGASALYPLHEDYEtgiWQVRLKDLQkslqEARDKgaNVRALVIINPGNPTGQCMSPKEVSDVLAFAAREGLVLLADEVYQDNVYNDptadkkgkkNEFYSfrraLSEmrrtnpaLASRAQIVSMHSTSKGFAgECGLRGGFFCLD---GAWDSTVKAQLVKIASICLCSNVIGQLAMGLIVappesaQPSHAQFVGErtaILESLRQRATTLAQCLDKLPGITCAPAEGALYLFPRIEMpiKAIEAareagVAPDEFYALKLLDATGLVVVPGSGFGQPDpfafHVRMTFLPPADQLDCVMEDIAKFH 517
                 3345789******************************************99983578887578***************************9887656699999877511114455444788******************************************************99556542222444111222267777799*********93579999999875...566677889999999999999999999998777222111445567775412256778899**************************99886333343311122566878899*****************9875554688888888888888888887775 PP

>> TIGR01264  tyr_amTase_E: tyrosine aminotransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.1   0.0   1.7e-32   6.4e-30      51     398 ..     120     516 ..     112     520 .. 0.75

  Alignments for each domain:
  == domain 1    score: 102.1 bits;  conditional E-value: 1.7e-32
   TIGR01264  51 eeavkalkesvds.gkynGyaptvGaleareaiaeyyankradgeleaddvvlasGcshalelaie.aladaG.envlvPrPGfplyetlakaldievklynlladed...weidlkeleslidd......ktkalivnnPsnPcGsvfsrkhleellalaerlklpiladeiyedlvfkg.............atflalas.......lssevPilslgGlakrllv.PGWrlGWliihdrkgvlrdvkdGlkklsqrilGpntlvqGalkeilr....ktPq..eyf...dgvvsvlesnadlvyealaevvGlkpvkPkGamyllvkiel.....e..kfkelksdvefveklveeesvfvlPgsifelPg....ylrvvltvpkavleeavsrikef 398
                 + +v + ++ v+s ++   y+ ++G +  re+ia++ + +r   e +a d+ l+ G+s +++  ++ +la +G + vl P P +ply++l+  +d    ly l  d +   w++ lk+l++   +      + +al++ nP+nP+G  +s k + ++la+a+r  l++lade+y+d v+++             +   al++       l s+  i+s+  ++k +    G r G++ +    +    vk  l+k++   l +n + q a+  i+       P   ++    + +++ l++ a+ + + l +++G++    +Ga+yl+ +ie+     e  +   +  d  +  kl++   + v+Pgs f  P+    ++r++   p+ +l   ++ i++f
  MMETSP1137-20121227|5349_1 120 D-VVARARKYVNSiRSVGAYSDSQGVPVVREEIAKFLR-QRDGCEASAGDIFLTDGASAGVRALMQcVLAVPGvDAVLAPSPVYPLYSALSTVMDGASALYPLHEDYEtgiWQVRLKDLQKSLQEardkgaNVRALVIINPGNPTGQCMSPKEVSDVLAFAAREGLVLLADEVYQDNVYNDptadkkgkknefySFRRALSEmrrtnpaLASRAQIVSMHSTSKGFAGeCGLRGGFFCLDGAWDS--TVKAQLVKIASICLCSNVIGQLAMGLIVAppesAQPShaQFVgerTAILESLRQRATTLAQCLDKLPGITCAPAEGALYLFPRIEMpikaiEaaREAGVAPDEFYALKLLDATGLVVVPGSGFGQPDpfafHVRMTFLPPADQLDCVMEDIAKF 516
                 3.44444555555155677******************9.888999*************998766652456666589***************************98876455899888876433221222336789*****************************************************9977773334455411111116677778999*******963799*999999877765..578889999999999999999998877642211223211444222357888999***************************99986332222112334566777889*****************997433335666656666666666666665 PP

>> TIGR03540  DapC_direct: LL-diaminopimelate aminotransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.2   0.0   5.1e-17   1.9e-14      61     214 ..     136     299 ..     112     304 .. 0.81
   2 !   12.3   0.0   3.5e-05     0.013     296     380 ..     414     513 ..     394     516 .. 0.67

  Alignments for each domain:
  == domain 1    score: 51.2 bits;  conditional E-value: 5.1e-17
   TIGR03540  61 hryPsyeGllayrkavadwykkrfgveldpetevlsliGskeGiahlplafvn.pG.divlvpdPgyPvykistllaggepyelPlkeendf......lPdldaipedvlkk...akilflnyPnnPtsavadkeffkevvefakeyniivvhdaayseivfdey 214
                   y +++G+ + r+++a+++++r g e  +  ++    G+  G+  l+ +++  pG d vl p+P yP y+  +++++g +   Pl+e+ +       l dl++  ++   k    + l +  P nPt+ + + + + +v++fa+ ++++++ d+ y++ v+++ 
  MMETSP1137-20121227|5349_1 136 GAYSDSQGVPVVREEIAKFLRQRDGCEASAG-DIFLTDGASAGVRALMQCVLAvPGvDAVLAPSPVYPLYSALSTVMDGASALYPLHEDYETgiwqvrLKDLQKSLQEARDKganVRALVIINPGNPTGQCMSPKEVSDVLAFAAREGLVLLADEVYQDNVYNDP 299
                 57999**********************8876.555567999***9999987643556******************************987633334447888876555554422258899999************************************999985 PP

  == domain 2    score: 12.3 bits;  conditional E-value: 3.5e-05
   TIGR03540 296 ykkrrdllvealkki.GldvkkpkatfylWvkv..P.........eGytsaef.akklleeagvvvtpGvgfGesGe..Gyirisltvseerlkeaverl 380
                  ++r  +l + l k+ G+++  +++++yl+ ++  P         +G+   ef a kll+ +g+vv+pG gfG+      ++r++   + ++l   +e +
  MMETSP1137-20121227|5349_1 414 LRQRATTLAQCLDKLpGITCAPAEGALYLFPRIemPikaieaareAGVAPDEFyALKLLDATGLVVVPGSGFGQPDPfaFHVRMTFLPPADQLDCVMEDI 513
                 577888889999888789999999999998554113322222222466666662569****************975411345666666666666665555 PP

>> TIGR03947  viomycin_VioD: capreomycidine synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.0   0.0   1.5e-14   5.8e-12      48     195 ..     139     302 ..     129     319 .. 0.79
   2 !   12.6   0.1   2.7e-05      0.01     260     355 ..     400     513 ..     311     516 .. 0.63

  Alignments for each domain:
  == domain 1    score: 43.0 bits;  conditional E-value: 1.5e-14
   TIGR03947  48 seslGgeklraalad..rlagG...daekvlvthGsseaiylvltall.rPG.devvvvdpayhslselavalgakvrrwplaaerd...frpdlddlralvtd.r.....trlvvvnfPhnPtGasvderelsellelaaesgavllWdaafadlvydaeplp 195
                 s s+G + +r+ +a+  r ++G    a  ++ t G+s  +   ++ +l  PG d v+   p+y   s+l++ ++     +pl+ + +   ++++l+dl++ +++ r      r++v+  P nPtG++++++e s++l+ aa+ g vll d+ ++d vy+ ++  
  MMETSP1137-20121227|5349_1 139 SDSQGVPVVREEIAKflRQRDGceaSAGDIFLTDGASAGVRALMQCVLaVPGvDAVLAPSPVYPLYSALSTVMDGASALYPLHEDYEtgiWQVRLKDLQKSLQEaRdkganVRALVIINPGNPTGQCMSPKEVSDVLAFAAREGLVLLADEVYQDNVYNDPTAD 302
                 789***********8456666632235689*******9997777665526997889999*************99999999998765433478999999876543242222235666667***************************************977654 PP

  == domain 2    score: 12.6 bits;  conditional E-value: 2.7e-05
   TIGR03947 260 adalieprlaearanrrrlldWaaahedv..vrltvPeGGvaafprf............agladvtdlCerllarhgvlvvPGscfGaadr....vrlGfggssaeleaGlerl 355
                   ++++ r+a   + r+r+   a   + +  + +++ eG +  fpr+            ag+a  + +  +ll+  g +vvPGs fG++d     vr+ f  ++++l   +e +
  MMETSP1137-20121227|5349_1 400 HAQFVGERTAILESLRQRATTLAQCLDKLpgITCAPAEGALYLFPRIempikaieaareAGVAPDEFYALKLLDATGLVVVPGSGFGQPDPfafhVRMTFLPPADQLDCVMEDI 513
                 3467777777666666666665554333222899999999999999999999999987766666677888******************98544459999988888777666655 PP

>> TIGR01141  hisC: histidinol-phosphate transaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.7   0.0   3.5e-17   1.3e-14      41     189 ..     127     297 ..     116     420 .. 0.81

  Alignments for each domain:
  == domain 1    score: 51.7 bits;  conditional E-value: 3.5e-17
   TIGR01141  41 alkeelkklhrYpdpqale.lkealakylg......veeenillgnGsdeliellirafl.epg.davlvleptysmYevsakiagaevkevplked.....gqedleavle....aake..kvklvflasPnnPtGnllkreeiekvleev.edalVVv.DeAYieFsee 189
                 ++ ++++++  Y d+q++  ++e++ak+l        ++ +i+l++G+  ++++l++ +l  pg davl+++p y +Y+  +++ +   + +pl+ed     +q  l+++++    a+++  +v+   + +P nPtG++++ +e+ +vl+ + +++lV++ De Y +   +
  MMETSP1137-20121227|5349_1 127 KYVNSIRSVGAYSDSQGVPvVREEIAKFLRqrdgceASAGDIFLTDGASAGVRALMQCVLaVPGvDAVLAPSPVYPLYSALSTVMDGASALYPLHEDyetgiWQVRLKDLQKslqeARDKgaNVRALVIINPGNPTGQCMSPKEVSDVLAFAaREGLVLLaDEVYQDNVYN 297
                 34456668999***99976268999999999999999999****************98752699********************************9999996655555544333444441145567899*********************9669999755****985544 PP

>> TIGR03538  DapC_gpp: succinyldiaminopimelate transaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.1   0.0   1.1e-16     4e-14      52     258 ..     129     355 ..      94     381 .. 0.78
   2 ?   -3.0   0.0       1.4   5.2e+02     336     385 ..     462     507 ..     444     516 .. 0.72

  Alignments for each domain:
  == domain 1    score: 50.1 bits;  conditional E-value: 1.1e-16
   TIGR03538  52 venleelskyPttkGlpelreaiaeWlerrfelpagvdperqvlPvnGtrealfafvqavidraekalvvlPnPfyqiyeG.aallagaepyf.lnctaengf.kpdfdavpeev......WkrvqllfvcsPgnPtGavlsleelkklleladkydfiiasdecys.elyldeaeaPvG.......lleaaaelGrdd.....fkrllvfhslskr.snvPGlrsGfva 258
                 v+++ ++ +y  ++G p +re ia++l++r   +a   ++ +++   G+  ++ a++q+v++     +v+ P P y +y   ++++ ga   + l+ + e+g+ +  ++ +++++       ++v+ l +  PgnPtG+ +s +e++ +l+ a + ++++ +de y  ++y d ++   G         +a  e+ r++       +++ +hs sk  +   Glr Gf  
  MMETSP1137-20121227|5349_1 129 VNSIRSVGAYSDSQGVPVVREEIAKFLRQRDGCEA---SAGDIFLTDGASAGVRALMQCVLAVPGVDAVLAPSPVYPLYSAlSTVMDGASALYpLHEDYETGIwQVRLKDLQKSLqeardkGANVRALVIINPGNPTGQCMSPKEVSDVLAFAAREGLVLLADEVYQdNVYNDPTADKKGkknefysFRRALSEMRRTNpalasRAQIVSMHSTSKGfAGECGLRGGFFC 355
                 67888999**********************88888...8899*************************************97467888888777455555555324444444443311111145789999*************************************7359999777666622221113445666666532222266788888888862456788888865 PP

  == domain 2    score: -3.0 bits;  conditional E-value: 1.4
   TIGR03538 336 gddeafaralyeeenvkvlpGrylsreaegvnPGegrvrlalvaeleecv 385
                  +de +a +l +++ + v+pG+ ++    + +P + +vr++++ + ++  
  MMETSP1137-20121227|5349_1 462 APDEFYALKLLDATGLVVVPGSGFG----QPDPFAFHVRMTFLPPADQLD 507
                 6789999999999999999998654....567777778877776665554 PP

>> TIGR03542  DAPAT_plant: LL-diaminopimelate aminotransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.5   0.0   4.7e-14   1.8e-11      58     219 ..     125     295 ..     108     302 .. 0.76
   2 ?    3.8   0.0     0.013       4.8     357     375 ..     470     488 ..     454     515 .. 0.75

  Alignments for each domain:
  == domain 1    score: 41.5 bits;  conditional E-value: 4.7e-14
   TIGR03542  58 aveelaseetfrGyGpeqGldllreaiaeeeykgr...idpeeifisdGakcdvarllelf....gsdktvavqdPvyPvyvd.savlaGragvldddgkyk.kivylpctkene.fiPelpeekkvdiiylCsPnnPtGtvltkeqlkelvdyakendslilfdaayeafi 219
                 a + ++s +++  y   qG++++re+ia+   +      ++ +if++dGa + v  l++ +    g d++     PvyP y   s+v+ G+++    ++ y+  i ++  ++ ++ ++ +  +  +v  +++  P nPtG  ++ +++ +++ +a +++ ++l d  y+  +
  MMETSP1137-20121227|5349_1 125 ARKYVNSIRSVGAYSDSQGVPVVREEIAKFLRQRDgceASAGDIFLTDGASAGVRALMQCVlavpGVDAV-LAPSPVYPLYSAlSTVMDGASALYPLHEDYEtGIWQVRLKDLQKsLQEARDKGANVRALVIINPGNPTGQCMSPKEVSDVLAFAAREGLVLLADEVYQDNV 295
                 445556666777899************98766655767999*************9987654121133443.44789*****983568889988887666666156666655544404445556678999***************************************8766 PP

  == domain 2    score: 3.8 bits;  conditional E-value: 0.013
   TIGR03542 357 kllkeaevvgtPGsGfGss 375
                 kll  + +v++PGsGfG+ 
  MMETSP1137-20121227|5349_1 470 KLLDATGLVVVPGSGFGQP 488
                 6899999**********85 PP

>> TIGR01140  L_thr_O3P_dcar: threonine-phosphate decarboxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.5   0.0     1e-13   3.7e-11      51     182 ..     149     305 ..     126     475 .. 0.89

  Alignments for each domain:
  == domain 1    score: 40.5 bits;  conditional E-value: 1e-13
   TIGR01140  51 delreaaaayygld..aesvlavnGaqeaiqllprl....lapkrvlvlaptyseyaralraagaevvels...................dleelaaeleeadllvvvnPnNPtGrllekeellalaerlkarggllvvDEAFidftpaeslaalae 182
                 +e++++++++ g++  a ++ ++ Ga + +++l+++     +  +vl ++p y  y +  +  +     ++                   +l+e++++ +++++lv++nP NPtG++++++e+ ++++ ++++g +l+ DE + d + ++  a+++ 
  MMETSP1137-20121227|5349_1 149 EEIAKFLRQRDGCEasAGDIFLTDGASAGVRALMQCvlavPGVDAVLAPSPVYPLYSALSTVMDGASALYPlhedyetgiwqvrlkdlqkSLQEARDKGANVRALVIINPGNPTGQCMSPKEVSDVLAFAAREGLVLLADEVYQDNVYNDPTADKKG 305
                 5667777777777766789999999999999999885432345566888899****999998888888888899*********8887666666666666**********************************************998876555554 PP

>> TIGR03539  DapC_actino: succinyldiaminopimelate transaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.8   0.1   6.6e-13   2.4e-10      36     331 ..     122     468 ..      99     511 .. 0.71

  Alignments for each domain:
  == domain 1    score: 37.8 bits;  conditional E-value: 6.6e-13
   TIGR03539  36 palirealaeaadapgyPqtaGteelreaivdalerrlgvkgldeeavlPviG.tkelvallPtllGlgagdtvviPevayPtye.vgarlagaea..............vaaddlteldp......ekvkliwlnsPanPtGrvlsveelrkvvalarergvvvasdecylelgWege................avsvld.pevcggdlegllavhslskr.snlagyragfv....aGdealvaellevrkha...........GlmvpaPvqaamvaaladdehvaeqkeryaarrellkaaleka.GfriehseaglylWatrgedaretvdrlaelGilvaPGdfyg 331
                  a+ r+ +++   + +y   +G + +re i++ l++r g ++  + +++ + G +  + al+  +l +   d+v+ P+  yP y+ +++ + ga+a              v+  dl++  +      ++v+ + +  P+nPtG+ +s +e+  v+a+a  +g v+ +de y + ++++                 a+s +   + +  ++  ++++hs sk  +   g r gf     a d+ + a+l+++   +           Gl+v+ P  a    a +   + ++  e  ++r ++l++ l k  G +   +e++lyl+  r e   +++++  e G  vaP +fy+
  MMETSP1137-20121227|5349_1 122 VARARKYVNSIRSVGAYSDSQGVPVVREEIAKFLRQRDGCEAS-AGDIFLTDGaSAGVRALMQCVLAVPGVDAVLAPSPVYPLYSaLSTVMDGASAlyplhedyetgiwqVRLKDLQKSLQeardkgANVRALVIINPGNPTGQCMSPKEVSDVLAFAAREGLVLLADEVYQDNVYNDPtadkkgkknefysfrrALSEMRrTNPALASRAQIVSMHSTSKGfAGECGLRGGFFcldgAWDSTVKAQLVKIASIClcsnvigqlamGLIVAPPESAQPSHA-QFVGERTAILESLRQRATTLAQCLDKLpGITCAPAEGALYLFP-RIEMPIKAIEAAREAG--VAPDEFYA 468
                 5556666777778889*************************77.55565566615566699999********************73677788887511111111111111444444432223444555666667777*************************************99887888999999999987766655413445678899999999999735678999999733333466777888877542111111111111444443333332222.2223333344567888888999988755999999999999986.5566677777777777..47888886 PP

>> TIGR03537  DapC: succinyldiaminopimelate transaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.6   0.0   5.6e-12   2.1e-09      22     338 ..     128     504 ..     110     516 .. 0.68

  Alignments for each domain:
  == domain 1    score: 34.6 bits;  conditional E-value: 5.6e-12
   TIGR03537  22 lldavpevsqypsvlGekalreaiagylerrfgvkldpdaevlpsaGskeaifhlplafldpeeerkkviygtpgypvyerGalfaggealkvklkkedg...flleldaveeailr......etkivwinyphnptGaeapasylkevaelareygiilasdecyae.iysee...............kpasvlev........glenvlafhslskr.sGmtGyrsgfl....aGdeelvsalrklra......svGv.aspefvqaaataawsddahvaerrkifkrkrdl...fleflak.kGlealasdatfylw..vkvp..........egidaksyalrllee.GivvapGeafgage..eeyvrvalvptle 338
                  ++++ +v  y    G   +re ia++l++r g +   + +++ + G+   +  l    l   +    v+ ++p yp y   +   +g +    l+++ +   + ++l+++++++ +      + + + i  p nptG   + + + +v ++a   g++l++de y + +y++                +  ++ e+        ++ +++++hs sk  +G  G r gf+    a d+++ ++l k+ +       +G  a    v+   +a  s  + v er  i++  r++   + + l k  G+ + +++ ++yl+  +++p          +   ++ yal+ll++ G+vv pG+ fg+ +  + +vr++++p  +
  MMETSP1137-20121227|5349_1 128 YVNSIRSVGAYSDSQGVPVVREEIAKFLRQRDGCEAS-AGDIFLTDGASAGVRALMQCVLA-VPGVDAVLAPSPVYPLYSALSTVMDGASALYPLHEDYEtgiWQVRLKDLQKSLQEardkgaNVRALVIINPGNPTGQCMSPKEVSDVLAFAAREGLVLLADEVYQDnVYNDPtadkkgkknefysfrR--ALSEMrrtnpalaSRAQIVSMHSTSKGfAGECGLRGGFFcldgAWDSTVKAQLVKIASiclcsnVIGQlAMGLIVAPPESAQPSHAQFVGERTAILESLRQRattLAQCLDKlPGITCAPAEGALYLFprIEMPikaieaareaGVAPDEFYALKLLDAtGLVVVPGSGFGQPDpfAFHVRMTFLPPAD 504
                 568999***************************9976.67888888988888776666555.677889************9888888888777776643322356899999997764222222356678889*******9999999********************973565423334333222222111..122331122222256789********6489********83333446666666666644111111233313333444555677788999******99866665111456666635************9855334422222111111234678******8549**********985225677888777655 PP

>> TIGR03801  asp_4_decarbox: aspartate 4-decarboxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   0.0   7.1e-08   2.6e-05     192     285 ..     199     292 ..     145     301 .. 0.67
   2 ?   -2.8   0.0      0.89   3.3e+02     468     489 ..     469     490 ..     466     523 .. 0.79

  Alignments for each domain:
  == domain 1    score: 20.6 bits;  conditional E-value: 7.1e-08
   TIGR03801 192 PiftPyleipelerydlevvkikadeakedgkatwqytdkelek.L...kd..pkikalfvvnPsnPpsvaiseesieklakiveekrpdLmiltDDvyg 285
                 P++  y  ++++ + +     ++ d ++      wq+  k+l+k L   +d   +++al+++nP nP++  +s++ ++ + +  +  r+ L++l+D+vy 
  MMETSP1137-20121227|5349_1 199 PVYPLYSALSTVMDGASALYPLHEDYET----GIWQVRLKDLQKsLqeaRDkgANVRALVIINPGNPTGQCMSPKEVSDVLAFAA--REGLVLLADEVYQ 292
                 5555555555555555555444444433....37888877777633222442258**********************99988765..699*********6 PP

  == domain 2    score: -2.8 bits;  conditional E-value: 0.89
   TIGR03801 468 frlaeessivLLkgegfkseew 489
                 ++l + +++v+++g+gf+ +++
  MMETSP1137-20121227|5349_1 469 LKLLDATGLVVVPGSGFGQPDP 490
                 5788999**********99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (529 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       132  (0.0321794); expected 82.0 (0.02)
Passed bias filter:                      122  (0.0297416); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                        11  (0.00268162); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.60u 0.16s 00:00:00.76 Elapsed: 00:00:00.63
# Mc/sec: 1108.29
//
Query:       MMETSP1137-20121227|5350_1  [L=432]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.14    9.2  53.8      0.081   10.0  21.2    2.3  2  TIGR02794 tolA_full: protein TolA
        1.4    6.7  20.6       0.39    8.5   6.5    2.3  2  TIGR03499 FlhF: flagellar biosynthesis protein FlhF


Domain annotation for each model (and alignments):
>> TIGR02794  tolA_full: protein TolA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9  10.5    0.0014       2.9     106     169 ..      13      67 ..       6     104 .. 0.47
   2 ?   10.0  21.2   3.9e-05     0.081     136     251 ..     258     320 ..     242     350 .. 0.35

  Alignments for each domain:
  == domain 1    score: 4.9 bits;  conditional E-value: 0.0014
   TIGR02794 106 aaekaak.kaeeaakekeekkkqaeeakakqaaEa.kakaeaeaKaekkakeeAakkaEeeakaka 169
                 + e+ ++ +a ++++e+ +k+++   + +++a Ea  a+ eaea          a+ aEe a+ ++
  MMETSP1137-20121227|5350_1  13 KNEQSSRqRAAAERREALRKEREV-SRLQRAAREAeIAQREAEA----------ARAAEESARMRE 67 
                 333333323333333333333333.1112222222222222222..........222222221111 PP

  == domain 2    score: 10.0 bits;  conditional E-value: 3.9e-05
   TIGR02794 136 aaEakakaeaeaKaekkakeeAakkaEeeakakaaaeakkkaEaeeakkkaeaeakKakaeaeaKakaeeakaKaeaeAkaKAeaeAkaKaeaeakakakaeaerkaakqeaelad 251
                 ++E  a+aeae+++   ++++Aa  aE+ea                                         k+ a+a+A a Ae eA+++ +a+a+        ++   +e e++ 
  MMETSP1137-20121227|5350_1 258 EEEEVAAAEAERRR--AEAAAAAFAAEQEA-----------------------------------------KRAAAAAAAAAAEREAEEREKAAAA--------AAR--EEREGRR 320
                 11222222222211..11111111222222.........................................1111111111122222222211111........110..1111111 PP

>> TIGR03499  FlhF: flagellar biosynthesis protein FlhF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   2.3    0.0051        10      56     108 ..      20      72 ..       3     125 .. 0.47
   2 ?    8.5   6.5   0.00019      0.39      44     116 ..     249     322 ..     224     337 .. 0.52

  Alignments for each domain:
  == domain 1    score: 3.8 bits;  conditional E-value: 0.0051
   TIGR03499  56 sasaaseeeeakkaleeaepkklskaeekeekekeaeekaaeaaqeaekklee 108
                 +++aa+++e+++k+ e ++ +++++++e +++e+ea+++a+e+a+ +e +le+
  MMETSP1137-20121227|5350_1  20 QRAAAERREALRKEREVSRLQRAAREAEIAQREAEAARAAEESARMREADLEK 72 
                 11222222222222222222222222222233333333333333333322222 PP

  == domain 2    score: 8.5 bits;  conditional E-value: 0.00019
   TIGR03499  44 kvevvaaideeesasaaseeeeakkaleea.epkklskaeekeekekeaeekaaeaaqeaekkleeaeeelrke 116
                 +vev a+++eee+ +aa++e+ +++a+ +a ++++++k ++++++++ ae++a+e++++a+ ++ e++e  r+e
  MMETSP1137-20121227|5350_1 249 EVEVXASVEEEEEVAAAEAERRRAEAAAAAfAAEQEAKRAAAAAAAAAAEREAEEREKAAAAAAREEREGRRRE 322
                 69**********33333333222222222202222222222222233333333333333333333333433333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (432 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       332  (0.0809361); expected 82.0 (0.02)
Passed bias filter:                       97  (0.023647); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.37u 0.14s 00:00:00.51 Elapsed: 00:00:00.70
# Mc/sec: 814.56
//
Query:       MMETSP1137-20121227|5351_1  [L=266]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (266 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       110  (0.0268162); expected 82.0 (0.02)
Passed bias filter:                       97  (0.023647); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.13s 00:00:00.37 Elapsed: 00:00:00.57
# Mc/sec: 605.33
//
Query:       MMETSP1137-20121227|5352_1  [L=295]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.9e-16   56.5   0.0    2.9e-09   35.1   0.0    2.1  2  TIGR03354 VI_FHA: type VI secretion system FHA domain protein


Domain annotation for each model (and alignments):
>> TIGR03354  VI_FHA: type VI secretion system FHA domain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.0     4e-08   0.00016      27     109 ..      69     158 ..      57     172 .. 0.76
   2 !   35.1   0.0     7e-13   2.9e-09      23     112 ..     195     282 ..     183     295 .] 0.78

  Alignments for each domain:
  == domain 1    score: 19.4 bits;  conditional E-value: 4e-08
   TIGR03354  27 tiGrsed.cdWvlpDperlvssrhaeiek.rdgaylltdlStnGvfln........nsgsplrrgepvrLeqgdelrlGdyeirvslaagaap 109
                  +Gr+    d+v +D+   vs++ha i++   ++++l   S  G+++         + gsp+ +g+p++Le+ +++rlG+  +  +l  g ap
  MMETSP1137-20121227|5352_1  69 LLGRQHGlVDLVFDDQS--VSRQHAAIINsSTSTFVLDLKSAQGTYVGdervtpvpKLGSPIISGQPQQLEEAQTIRLGSSAMVLKL-VGVAP 158
                 56665532577778877..*****9887625799************9833333333589********************98887777.34444 PP

  == domain 2    score: 35.1 bits;  conditional E-value: 7e-13
   TIGR03354  23 eeggtiGrsed.cdWvlpDperlvssrhaeiekrdgaylltdl.StnGvflnnsgsplrrgepvrLeqgdelrlG..dyeirvslaagaapafd 112
                 ++g+ +Grse+  d+++pD+   vs++ha i +++++ ++ dl St G+f++   ++l+  +  +L++gd++++G  +ye +v +    a++ d
  MMETSP1137-20121227|5352_1 195 KKGVXVGRSEErTDLSVPDAS--VSRQHAAIVHDEETTYIVDLgSTHGTFVE--AARLEPNKYTKLSNGDTIAFGtaPYEYKVDI--NTAQRLD 282
                 6789****987369*****99..******999988765555544********..9********************4448888888..3344433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (295 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        64  (0.0156021); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.26u 0.16s 00:00:00.42 Elapsed: 00:00:00.52
# Mc/sec: 748.78
//
Query:       MMETSP1137-20121227|5353_1  [L=338]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (338 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        87  (0.0212092); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.13s 00:00:00.39 Elapsed: 00:00:00.43
# Mc/sec: 1037.50
//
Query:       MMETSP1137-20121227|5354_1  [L=356]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (356 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       214  (0.0521697); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.18s 00:00:00.47 Elapsed: 00:00:00.54
# Mc/sec: 870.15
//
Query:       MMETSP1137-20121227|5355_1  [L=54]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        35  (0.00853242); expected 82.0 (0.02)
Passed bias filter:                       34  (0.00828864); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.13s 00:00:00.24 Elapsed: 00:00:00.24
# Mc/sec: 296.98
//
Query:       MMETSP1137-20121227|5357_1  [L=259]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      7e-09   31.8   2.3    4.2e-06   22.6   0.0    2.1  2  TIGR02168 SMC_prok_B: chromosome segregation protein SMC
    5.4e-08   28.8   2.5    5.9e-06   22.0   0.0    2.1  2  TIGR02169 SMC_prok_A: chromosome segregation protein SMC


Domain annotation for each model (and alignments):
>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.6   2.2   0.00014      0.29     760     801 ..      57      98 ..       2     147 .. 0.46
   2 !   22.6   0.0     2e-09   4.2e-06    1091    1149 ..     155     216 ..     150     220 .. 0.78

  Alignments for each domain:
  == domain 1    score: 6.6 bits;  conditional E-value: 0.00014
   TIGR02168 760 eleeereeleeeleeaeeelkeaeeeieeleaeieqlkeelk 801
                 +l+++  e+ ++ +e  e++k++++++++le ++e+ +e+l+
  MMETSP1137-20121227|5357_1  57 KLKQRLDEALQAQDERAENAKAVKANVQTLEHTVEEREENLN 98 
                 122222222222222222222222222222222222222221 PP

  == domain 2    score: 22.6 bits;  conditional E-value: 2e-09
   TIGR02168 1091 lLSGGEKALtAlaLlFAifkvkPaPfciLDEVdApLDdaNveRFakl.lkef..skktQFIv 1149
                   LSGGE+A+t +++l+++ +   +Pf  LDE dA  D++  +  +++ l+ f  +++ QFIv
  MMETSP1137-20121227|5357_1  155 GLSGGERAITITSFLLSLWQFCESPFRALDEPDAQCDETAHRAMLRMfLRAFcaQRTRQFIV 216 
                  59*********************************999866555543145542233346666 PP

>> TIGR02169  SMC_prok_A: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    2.0   3.9    0.0034       6.9     731     776 ..      53      98 ..       2     142 .. 0.51
   2 !   22.0   0.0   2.9e-09   5.9e-06    1073    1139 ..     153     222 ..     140     231 .. 0.83

  Alignments for each domain:
  == domain 1    score: 2.0 bits;  conditional E-value: 0.0034
   TIGR02169 731 eeeeklkerleeleeklseleeeleekkeelkeleaeieeleekla 776
                    +klk+rl+e  + ++e  e+ +++k+++++le+ +ee+ee+l+
  MMETSP1137-20121227|5357_1  53 VTTAKLKQRLDEALQAQDERAENAKAVKANVQTLEHTVEEREENLN 98 
                 3344444444444444444444444445555555555544444443 PP

  == domain 2    score: 22.0 bits;  conditional E-value: 2.9e-09
   TIGR02169 1073 leamSGGEKsltALsfifAiQrykPspfYafDEvDmfLDgvNvervaklikek...akeaQfivvslrkp 1139
                  +  +SGGE+++t  sf+  + ++  spf a+DE D+  D+     + ++  +     +  Qfiv s +  
  MMETSP1137-20121227|5357_1  153 VRGLSGGERAITITSFLLSLWQFCESPFRALDEPDAQCDETAHRAMLRMFLRAfcaQRTRQFIVLSPKVE 222 
                  5679**************************************9999999765433145569***998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (259 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       292  (0.0711848); expected 82.0 (0.02)
Passed bias filter:                      211  (0.0514383); expected 82.0 (0.02)
Passed Vit filter:                        23  (0.00560702); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.36u 0.18s 00:00:00.54 Elapsed: 00:00:00.48
# Mc/sec: 712.19
//
Query:       MMETSP1137-20121227|5359_1  [L=434]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (434 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        60  (0.014627); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.17s 00:00:00.47 Elapsed: 00:00:01.18
# Mc/sec: 485.45
//
Query:       MMETSP1137-20121227|5360_1  [L=88]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (88 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        83  (0.020234); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.12s 00:00:00.26 Elapsed: 00:00:00.27
# Mc/sec: 430.19
//
Query:       MMETSP1137-20121227|5361_1  [L=62]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (62 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        55  (0.0134081); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.25
# Mc/sec: 327.33
//
Query:       MMETSP1137-20121227|5362_1  [L=285]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (285 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       103  (0.0251097); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.10s 00:00:00.35 Elapsed: 00:00:00.92
# Mc/sec: 408.88
//
Query:       MMETSP1137-20121227|5363_1  [L=835]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (835 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        97  (0.023647); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.49u 0.18s 00:00:00.67 Elapsed: 00:00:00.53
# Mc/sec: 2079.45
//
Query:       MMETSP1137-20121227|5364_1  [L=149]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (149 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        51  (0.012433); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.14s 00:00:00.31 Elapsed: 00:00:00.30
# Mc/sec: 655.55
//
Query:       MMETSP1137-20121227|5365_1  [L=184]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-26   90.5   0.1    1.3e-25   87.3   0.0    2.0  2  TIGR01068 thioredoxin: thioredoxin
    2.4e-15   54.6   0.0    3.8e-15   53.9   0.0    1.3  1  TIGR01126 pdi_dom: protein disulfide-isomerase domain
    1.2e-14   52.5   0.0    1.6e-14   52.2   0.0    1.1  1  TIGR01130 ER_PDI_fam: protein disulfide isomerases
    9.5e-07   26.4   0.1    1.5e-06   25.7   0.0    1.4  1  TIGR00385 dsbE: periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily
    7.5e-05   20.6   0.0    0.00011   20.1   0.0    1.3  1  TIGR00411 redox_disulf_1: redox-active disulfide protein 1
    0.00097   15.6   0.0     0.0014   15.1   0.0    1.2  1  TIGR00424 APS_reduc: 5'-adenylylsulfate reductase, thioredoxin-independent


Domain annotation for each model (and alignments):
>> TIGR01068  thioredoxin: thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.0      0.13        87      22      33 ..      44      55 ..      29      68 .. 0.80
   2 !   87.3   0.0   1.9e-28   1.3e-25       2      99 ..      70     167 ..      69     169 .. 0.95

  Alignments for each domain:
  == domain 1    score: 1.2 bits;  conditional E-value: 0.13
   TIGR01068 22 wAeWCgpCkmla 33
                 A  C pC++la
  MMETSP1137-20121227|5365_1 44 SAAACTPCQALA 55
                5888****9987 PP

  == domain 2    score: 87.3 bits;  conditional E-value: 1.9e-28
   TIGR01068   2 seenfeetvassdklvlvDfwAeWCgpCkmlaPvleelakeleekvkvvKlnvdeeqeiaakygirsiPtlllfkngkevkrvvGakpkaalkeliek 99 
                 ++++fee+ ++  +++lvD +A+WCgpC+++aP le++a+ l ++ +v+K++ dee+e+a++  i+ +Pt+ll+++ k+v r+ Ga+  +++ +l e+
  MMETSP1137-20121227|5365_1  70 DTAQFEEEXQDCATPILVDIFATWCGPCQLMAPQLEKAAETLGDRCRVLKIDADEEPEVASALAIQGLPTVLLINDMKVVMRAEGALMSDEILQLAEH 167
                 5789***********************************************************************************99999988765 PP

>> TIGR01126  pdi_dom: protein disulfide-isomerase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.9   0.0   5.5e-18   3.8e-15       3     101 ..      71     165 ..      69     169 .. 0.88

  Alignments for each domain:
  == domain 1    score: 53.9 bits;  conditional E-value: 5.5e-18
   TIGR01126   3 aenfdelvldenkdvlvefyaPWCGhCkklaPeyeklakelkkeeekvkiakvdataekelaskfkvsgfPtlkffkkgkkepvdyeGeReaeelvefv 101
                 +++f+e  +d    +lv+ +a WCG C+ +aP+ ek+a++l +   +  + k+da++e e+as + ++g Pt+ ++++ k   ++ eG+   +e+ +  
  MMETSP1137-20121227|5365_1  71 TAQFEEEXQDCATPILVDIFATWCGPCQLMAPQLEKAAETLGD---RCRVLKIDADEEPEVASALAIQGLPTVLLINDMK-VVMRAEGALMSDEILQLA 165
                 5679999999999****************************96...579*************************999887.488888888777777655 PP

>> TIGR01130  ER_PDI_fam: protein disulfide isomerases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.2   0.0   2.3e-17   1.6e-14       4     101 ..      67     162 ..      65     174 .. 0.87

  Alignments for each domain:
  == domain 1    score: 52.2 bits;  conditional E-value: 2.3e-17
   TIGR01130   4 leltkenfddlike.nelvLveFYAPWCGHCksLaPeYekAAeelkkkspkvklakvDateekelaqkygvsGyPtLkifrngesssdYnGpReaegiv 101
                  ++ + +f++  ++    +Lv  +A WCG C+ +aP+ ekAAe+l ++     + k+Da ee e+a+   ++G Pt+ ++ + + +   +G+  +++i 
  MMETSP1137-20121227|5365_1  67 RKVDTAQFEEEXQDcATPILVDIFATWCGPCQLMAPQLEKAAETLGDRC---RVLKIDADEEPEVASALAIQGLPTVLLINDMKVVMRAEGALMSDEIL 162
                 5677788888777624569**************************9998...899*************************9998888888887777776 PP

>> TIGR00385  dsbE: periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.7   0.0   2.2e-09   1.5e-06      39     125 ..      59     146 ..      19     152 .. 0.83

  Alignments for each domain:
  == domain 1    score: 25.7 bits;  conditional E-value: 2.2e-09
   TIGR00385  39 pvpaekeaelkekvqlltaevlkkgklvLlnvwasWCptCraehplLkelake.g..lrivgvdykDesqkalkfLkelGnPyqlvlaDe 125
                  +pa+ +  + +++q+ + e    + ++L++++a+WC++C+   p L++ a++ g   r++ +d  De+++  + L   G P  l+++D 
  MMETSP1137-20121227|5365_1  59 TAPAMGLVRKVDTAQFEE-EXQDCATPILVDIFATWCGPCQLMAPQLEKAAETlGdrCRVLKIDA-DEEPEVASALAIQGLPTVLLINDM 146
                 467788888888888877.8888899**********************99986335589999995.888888899999999999888886 PP

>> TIGR00411  redox_disulf_1: redox-active disulfide protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.0   1.6e-07   0.00011      10      66 ..      93     149 ..      85     167 .. 0.77

  Alignments for each domain:
  == domain 1    score: 20.1 bits;  conditional E-value: 1.6e-07
   TIGR00411  10 tCPyCPkakkvveevakeegdkvevekinvmedlkkaleyGimavPaiv.ingkvefv 66 
                  C  C       e++a+ +gd+  v+ki+ +e+++ a    i++ P++  in+  ++v
  MMETSP1137-20121227|5365_1  93 WCGPCQLMAPQLEKAAETLGDRCRVLKIDADEEPEVASALAIQGLPTVLlINDM-KVV 149
                 4666777777789*********************************97626664.433 PP

>> TIGR00424  APS_reduc: 5'-adenylylsulfate reductase, thioredoxin-independent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   2.1e-06    0.0014     374     436 ..      84     143 ..      63     151 .. 0.78

  Alignments for each domain:
  == domain 1    score: 15.1 bits;  conditional E-value: 2.1e-06
   TIGR00424 374 awlvvlyapwcpfcqameasyvelaeklagsgvkvakfradgdqkefakqelqlgsfptillf 436
                 + lv ++a wc  cq m     + a+   g+  +v k+ ad +  e     l ++  pt+ll+
  MMETSP1137-20121227|5365_1  84 PILVDIFATWCGPCQLMAPQLEK-AAETLGDRCRVLKIDADEEP-EV-ASALAIQGLPTVLLI 143
                 67999***********9776555.55555778888888887664.33.457899999999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (184 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       131  (0.0319356); expected 82.0 (0.02)
Passed bias filter:                      104  (0.0253535); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.18u 0.16s 00:00:00.34 Elapsed: 00:00:00.28
# Mc/sec: 837.45
//
Query:       MMETSP1137-20121227|5367_1  [L=478]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0085   13.2   0.1       0.41    7.6   0.0    2.2  2  TIGR03857 F420_MSMEG_2249: probable F420-dependent oxidoreductase, MSMEG_2249 family


Domain annotation for each model (and alignments):
>> TIGR03857  F420_MSMEG_2249: probable F420-dependent oxidoreductase, MSMEG_2249 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    3.2   0.0    0.0023       9.3     194     249 ..     276     333 ..     231     343 .. 0.78
   2 !    7.6   0.0    0.0001      0.41     138     185 ..     358     407 ..     350     420 .. 0.85

  Alignments for each domain:
  == domain 1    score: 3.2 bits;  conditional E-value: 0.0023
   TIGR03857 194 kaaeaaGrdPasv.rvvatvvvapDlspeee.ravvkaravtYlqipgyGelLaevng 249
                   + + G d  sv r   +++++pDl  + + +++v+ar  ++ q+     lL + ng
  MMETSP1137-20121227|5367_1 276 IEEGQSGFDAVSVwRFGDSLAAVPDLNGDGTpELAVGARRSSFQQAGAVFVLLLNSNG 333
                 4556778888777567789*********9873569********998888778888776 PP

  == domain 2    score: 7.6 bits;  conditional E-value: 0.0001
   TIGR03857 138 yrvlrldDlpedaaPelvlaaiG.Pkala.lagrafDgviLhpfltpeav 185
                 y v+ ldDl  d+ Pel+++a+G P + + l   ++Dg++  ++l +  v
  MMETSP1137-20121227|5367_1 358 YSVVALDDLDYDGYPELAVGAVGdPLGTDtLFNPRWDGAVYVAYLDAGGV 407
                 899********************998876377889999999999876655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (478 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        70  (0.0170648); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.17s 00:00:00.50 Elapsed: 00:00:00.65
# Mc/sec: 970.63
//
Query:       MMETSP1137-20121227|5368_1  [L=199]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.3e-05   20.3   0.0    3.8e-05   20.1   0.0    1.0  1  TIGR03591 polynuc_phos: polyribonucleotide nucleotidyltransferase
     0.0025   14.1   0.0     0.0028   13.9   0.0    1.0  1  TIGR02696 pppGpp_PNP: guanosine pentaphosphate synthetase I/polyribonucleotide nucleotidyltransferase
     0.0074   13.9   0.0     0.0092   13.6   0.0    1.1  1  TIGR03665 arCOG04150: arCOG04150 universal archaeal KH domain protein
     0.0078   12.6   0.1     0.0093   12.3   0.1    1.0  1  TIGR03319 YmdA_YtgF: conserved hypothetical protein YmdA/YtgF


Domain annotation for each model (and alignments):
>> TIGR03591  polynuc_phos: polyribonucleotide nucleotidyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.0   3.7e-08   3.8e-05     546     613 ..       5      77 ..       1      83 [. 0.78

  Alignments for each domain:
  == domain 1    score: 20.1 bits;  conditional E-value: 3.7e-08
   TIGR03591 546 seyaPrietikinkdkireviGkgGkvireiieetgakidiedd...Gt.vk.iaaadkeaaekakklieeit 613
                 ++   ++et+  +kd +++viG+ G++i+e++ ++g++i+i+++   G+ +k +++ d +a++ a+ +++e++
  MMETSP1137-20121227|5368_1   5 RPLQGQMETLDCPKDLVGRVIGRRGETINELQAKSGTRIQIDQTvpdGQpCKiVITGDPNAVRLAVPMVQEVM 77 
                 55667899*********************************98655554334134557777788888887776 PP

>> TIGR02696  pppGpp_PNP: guanosine pentaphosphate synthetase I/polyribonucleotide nucleotidyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.0   2.8e-06    0.0028     580     616 ..      11      47 ..       2      80 .. 0.87

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 2.8e-06
   TIGR02696 580 viavkipvdkigevigpkgkvinsiqdetgaeisied 616
                 + ++  p d +g vig +g +in++q ++g+ i i++
  MMETSP1137-20121227|5368_1  11 METLDCPKDLVGRVIGRRGETINELQAKSGTRIQIDQ 47 
                 667889*****************************86 PP

>> TIGR03665  arCOG04150: arCOG04150 universal archaeal KH domain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   0.0     9e-06    0.0092       3      36 ..      15      48 ..      13      80 .. 0.79

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 9e-06
   TIGR03665  3 kipkdrigvliGkkgevkkeieektkvkleidse 36
                  pkd +g +iG++ge+ +e++ k +++++id++
  MMETSP1137-20121227|5368_1 15 DCPKDLVGRVIGRRGETINELQAKSGTRIQIDQT 48
                5689999999999999999999999999999975 PP

>> TIGR03319  YmdA_YtgF: conserved hypothetical protein YmdA/YtgF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.3   0.1   9.1e-06    0.0093     214     250 ..      19      60 ..      10      80 .. 0.80

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 9.1e-06
   TIGR03319 214 emkGRiiGreGRniralEtltGvdliiDdt.....Peavils 250
                 ++ GR+iGr G  i  l +  G  + iD+t     P+ +++ 
  MMETSP1137-20121227|5368_1  19 DLVGRVIGRRGETINELQAKSGTRIQIDQTvpdgqPCKIVIT 60 
                 689************************998544445566655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (199 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        84  (0.0204778); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.21u 0.14s 00:00:00.35 Elapsed: 00:00:00.55
# Mc/sec: 477.56
//
Query:       MMETSP1137-20121227|5369_1  [L=69]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (69 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        77  (0.0187713); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.15s 00:00:00.28 Elapsed: 00:00:00.28
# Mc/sec: 314.04
//
Query:       MMETSP1137-20121227|5371_1  [L=264]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (264 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       147  (0.0358362); expected 82.0 (0.02)
Passed bias filter:                      116  (0.0282789); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.18s 00:00:00.42 Elapsed: 00:00:00.44
# Mc/sec: 791.93
//
Query:       MMETSP1137-20121227|5373_1  [L=96]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (96 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        45  (0.0109703); expected 82.0 (0.02)
Passed bias filter:                       41  (0.00999512); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.15s 00:00:00.28 Elapsed: 00:00:00.43
# Mc/sec: 294.67
//
Query:       MMETSP1137-20121227|5374_1  [L=284]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (284 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        30  (0.00731351); expected 82.0 (0.02)
Passed bias filter:                       30  (0.00731351); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.13s 00:00:00.34 Elapsed: 00:00:00.62
# Mc/sec: 604.60
//
Query:       MMETSP1137-20121227|5375_1  [L=275]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (275 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       138  (0.0336421); expected 82.0 (0.02)
Passed bias filter:                       98  (0.0238908); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.16s 00:00:00.42 Elapsed: 00:00:00.83
# Mc/sec: 437.31
//
Query:       MMETSP1137-20121227|5376_1  [L=336]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0021   15.5   3.0       0.13    9.6   0.1    2.7  3  TIGR02521 type_IV_pilW: type IV pilus biogenesis/stability protein PilW


Domain annotation for each model (and alignments):
>> TIGR02521  type_IV_pilW: type IV pilus biogenesis/stability protein PilW
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.5   0.2   0.00057       2.3     174     227 ..      97     150 ..      85     155 .. 0.83
   2 ?   -1.4   0.0     0.073     3e+02     122     147 ..     154     179 ..     144     185 .. 0.80
   3 !    9.6   0.1   3.2e-05      0.13      78     135 ..     253     309 ..     225     336 .] 0.67

  Alignments for each domain:
  == domain 1    score: 5.5 bits;  conditional E-value: 0.00057
   TIGR02521 174 elaelklkkgqyaeAralleryqqtveqtaesLwLgiriakalgdaaaakeyea 227
                 + a + + k+ +a+ ++++e   q+ +q++++L L  ++a+a + +   k  ++
  MMETSP1137-20121227|5376_1  97 KQAAVLMRKRGLANCEKAMELLRQVHAQQPDDLELKLELADAINAVMRIKTHAN 150
                 45667788888999999999999999****************999888777766 PP

  == domain 2    score: -1.4 bits;  conditional E-value: 0.073
   TIGR02521 122 feaAiedpkYeqparsyeNaglcalk 147
                 +e  + +p+Y++ +r++ N +l ++k
  MMETSP1137-20121227|5376_1 154 LEGTVDSPAYKKIWRTLGNEALPLAK 179
                 5667899**********998876655 PP

  == domain 3    score: 9.6 bits;  conditional E-value: 3.2e-05
   TIGR02521  78 lgelekAeesfrkAltlkpnngdvlNNYGtFLcqqkkyeeAeqqfeaAiedpkYeqpa 135
                 +g ++ A+++f ++ +l+p   +++   G+  +q+++ye A+  f++Ai++p    ++
  MMETSP1137-20121227|5376_1 253 VGSKKSAAKYFDEGAKLAPSRRNLY-YVGVNAYQTGDYERAKDFFTRAIAAPCGSPTE 309
                 5677788888888888888776665.34888888888888888888888877544444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (336 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       142  (0.0346173); expected 82.0 (0.02)
Passed bias filter:                      130  (0.0316919); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.28u 0.17s 00:00:00.45 Elapsed: 00:00:00.37
# Mc/sec: 1198.60
//
Query:       MMETSP1137-20121227|5377_1  [L=251]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (251 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       128  (0.0312043); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.14s 00:00:00.35 Elapsed: 00:00:00.36
# Mc/sec: 920.26
//
Query:       MMETSP1137-20121227|5378_1  [L=416]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (416 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       109  (0.0265724); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.15s 00:00:00.43 Elapsed: 00:00:00.73
# Mc/sec: 752.16
//
Query:       MMETSP1137-20121227|5379_1  [L=293]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0023   14.5   0.0     0.0044   13.6   0.0    1.4  1  TIGR03300 assembly_YfgL: outer membrane assembly lipoprotein YfgL


Domain annotation for each model (and alignments):
>> TIGR03300  assembly_YfgL: outer membrane assembly lipoprotein YfgL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   0.0   1.1e-06    0.0044     104     166 ..     194     261 ..     171     271 .. 0.52

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 1.1e-06
   TIGR03300 104 dgglvlvgtekgevialdaedGke..lWrakvssevl..saplv.anglvvvrtsdgrvtaldaetGe 166
                 dg+l+l+gt++g viald+ +G++    r +++s+ l  +a ++ + + v+  ++dg+v+ ++ +tGe
  MMETSP1137-20121227|5379_1 194 DGKLMLLGTAQGCVIALDSFSGEVfkTYRGHANSQQLplAACFThDADTVLSGSEDGSVWRWSTQTGE 261
                 44444555555555555555554311344444444431122222133444444445555555555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (293 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        48  (0.0117016); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.24u 0.18s 00:00:00.42 Elapsed: 00:00:00.92
# Mc/sec: 420.36
//
Query:       MMETSP1137-20121227|5380_1  [L=130]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (130 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        59  (0.0143832); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.17s 00:00:00.32 Elapsed: 00:00:00.27
# Mc/sec: 635.50
//
Query:       MMETSP1137-20121227|5381_1  [L=54]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        34  (0.00828864); expected 82.0 (0.02)
Passed bias filter:                       30  (0.00731351); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.17s 00:00:00.27 Elapsed: 00:00:00.42
# Mc/sec: 169.70
//
Query:       MMETSP1137-20121227|5382_1  [L=515]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.1e-14   51.0  81.7    8.5e-10   34.8  35.9    2.0  2  TIGR02168 SMC_prok_B: chromosome segregation protein SMC
    1.2e-10   37.6  73.2      1e-07   27.9  29.7    2.1  2  TIGR02169 SMC_prok_A: chromosome segregation protein SMC
  ------ inclusion threshold ------
      0.037   10.8  71.9     0.0036   14.1  24.3    3.4  4  TIGR01843 type_I_hlyD: type I secretion membrane fusion protein, HlyD family


Domain annotation for each model (and alignments):
>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.8  15.2   2.7e-09   3.7e-06     736     931 ..      47     239 ..      29     255 .. 0.85
   2 !   34.8  35.9   6.2e-13   8.5e-10     678     934 ..     249     511 ..     239     514 .. 0.77

  Alignments for each domain:
  == domain 1    score: 22.8 bits;  conditional E-value: 2.7e-09
   TIGR02168 736 elerlekeveqleerlaqlekeleeleeereeleeeleeaeeelkeaeeeieeleaeieqlkeelkalrealseleaeltelkeeaaekeerleslekeiaalekeleeleeqieeleeeiesleaeieeleeeleeleeeleellkekasleealaelreeleelseelrelekkvkelereleelreklaqlel 931
                  l+    +++ l ++la l+ ++++++   e    +  eae++ + ae+++++ +a+i++l++++ +l+ +++ +++ l + +  ++     l+sl+k+i+++  ++  +ee++++++ee+ +l+  i++l+ee + l+ +l e ++ ++sl  +l + r++ + l++++++le+++k+ e+el+e++++la++ +
  MMETSP1137-20121227|5382_1  47 LLAGRAVQQQPLLAQLAALRMDVQRMALIAEGRLMQKCEAEKARDLAEQQRDTKQAKIDTLEADIMTLKVNIEGQKSLLXTKDMLYN---FVLTSLQKKIRDTDARAACAEEKLQRRNEEARRLQGXINKLDEENRSLHXDLREQKEMVSSLLVQLCTNRSKINGLEQKVESLESDKKAVEAELTETKKALADAVA 239
                 34444556777888999999999999999999999999999999***************************9998887777666666...78999********************************************************************************************999998654 PP

  == domain 2    score: 34.8 bits;  conditional E-value: 6.2e-13
   TIGR02168 678 kkeieeleeeieeleekiaelekelkelekeleeleeeleklrkeleelerklselkkelerlekeveqleerlaqlekeleeleeereeleeeleeaeeelkeaeeeieeleaeieqlkeelkalrealseleaeltelkeeaaekeerleslekeiaale..keleeleeqieelee...eiesleae....ieeleeeleeleeeleellkekasleealaelreeleelseelrelekkvkelereleelreklaqlelrle 934
                 ++e+  +  +i+ l+++i+ +e+ +++++    +le+e+++l+++l ++ r+ ++l + l++++++ ++l+++ + l++++++le+e ++l+++++e+e +l  aee+i +lea+i  l++e+++lr+++++le+++ +l++e+a ++e++e l++++a+ +  +e+++l+ + e++e+   +  +  +      +ele+ ++++++ l++++++  +++++++++r++ ++ls+e ++l+ +++++e++++ ++++++qle++ +
  MMETSP1137-20121227|5382_1 249 RRELLGMDGQIDLLKADIRHQEAVANRVKA---ALEDEVKDLEQKLATEVRHKDSLASLLAEETTRNNALTQHNRALQEKVAHLEAENRSLAANVAELEGKLRLAEEKILALEAQISGLQREVQQLRSRIQQLEQQVATLQRELAGAREQVEFLQNNLAEERagREADRLAYERERQEQaeaHRRERDHVraahAQELEQLRRQHQALLNDWSQQNFESRQERDAARTRATQLSNECNDLNARLTAAEQARDLAMTRVHQLEQQAQ 511
                 567777788899999999999999999988...7778888888888888889999999999999999999999999999***********************************************************99999999999999999998765422566666544443332000222222220000333444444555556666666667778888999999999999999999999999999999999999988876 PP

>> TIGR02169  SMC_prok_A: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3  15.6   4.6e-07   0.00063     271     468 ..      33     237 ..      29     243 .. 0.69
   2 !   27.9  29.7   7.5e-11     1e-07     244     507 ..     242     510 ..     236     515 .] 0.76

  Alignments for each domain:
  == domain 1    score: 15.3 bits;  conditional E-value: 4.6e-07
   TIGR02169 271 iekkleelnkkieklgeeeqlavkekleelkaeieklera...iaekeeeledaeerlakaeaeidklkeeieelereieeekkereklkeelkelke....eleelraeleevdkeaaelreelkelkekleklkeelnelkreldrlleelkrleeelaelkaelerieekiaeleeeleelaeeikkaeqkleqlkedleka 468
                 ++++le + ++i+ l  +++++ +  l++l a +  ++r     +    +  +ae+ +  ae+++d ++++i+ le +i + k++ e  k+ l  +      +l  l++++ + d++aa + e+l+ ++e+  +l+  +n+l  e++ l   l++++e ++ l  +l   ++ki+ le+++e+l+   k+ e +l ++k+ l++a
  MMETSP1137-20121227|5382_1  33 LRQTLESIREQINMLLAGRAVQQQPLLAQLAALRMDVQRMaliAEGRLMQKCEAEKARDLAEQQRDTKQAKIDTLEADIMTLKVNIEGQKSLLXTKDMlynfVLTSLQKKIRDTDARAACAEEKLQRRNEEARRLQGXINKLDEENRSLHXDLREQKEMVSSLLVQLCTNRSKINGLEQKVESLESDKKAVEAELTETKKALADA 237
                 6789999999999999999998887666666655555554100444444444555666667888888999999999999998888777666666655411114556777777788888888888888888888888888888877777777777777777777777777777777777777777777777777777777766655 PP

  == domain 2    score: 27.9 bits;  conditional E-value: 7.5e-11
   TIGR02169 244 ekelaeleeelekleeeieelekeleeiekkleelnkkieklgeeeqlavkekleelkae...iekleraiaekeeeledaeerlakaeaeidklkeeieelereieeekkereklkeelkelkeeleelraeleevdkeaaelreelkelkekleklkeelnelk..reldrlleelkrleeelaelkaelerieekiaeleeeleelaeeikkaeqkleqlkedlekaekelrklkeeleklekelselerelaeleaqakaseees 507
                   +++ l++el +++ +i+ l++ + + e++ + +++ +e++ ++   ++ ++++   +    +++     ++  ++ + ++e++a++eae ++l+++++ele++++  + +  +l+++++ l+ e ++lr+++++++++ a+l++el+ ++e++e l+++l e +  re drl  e +r+e++ a+ ++  +   ++ +ele+ + + ++ ++   q+  + ++++++a+ +  +l++e ++l+ +l+++e+  + + ++ +++e++ 
  MMETSP1137-20121227|5382_1 242 AXQIDVLRRELLGMDGQIDLLKADIRHQEAVANRVKAALEDEVKDLEQKLATEVRHKDSLaslLAEETTRNNALTQHNRALQEKVAHLEAENRSLAANVAELEGKLRLAEEKILALEAQISGLQREVQQLRSRIQQLEQQVATLQRELAGAREQVEFLQNNLAEERagREADRLAYERERQEQAEAHRRERDHVRAAHAQELEQLRRQHQALLNDWSQQNFESRQERDAARTRATQLSNECNDLNARLTAAEQARDLAMTRVHQLEQQA 510
                 56788888888888888888888888888888887777777777777777777765444300033344444556677788899999999999999999999999999999999999999999999999999999999999999999999999999999988766543378899977777776666666666666666778888888888889999888888899999999999999999999999999999888888877777777765 PP

>> TIGR01843  type_I_hlyD: type I secretion membrane fusion protein, HlyD family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3  15.2     0.041        56      80     231 ..      94     240 ..      32     254 .. 0.46
   2 ?    1.7  12.4     0.016        21     125     263 ..     172     311 ..     149     319 .. 0.74
   3 ?    4.8   6.6    0.0018       2.5      82     182 ..     258     356 ..     251     361 .. 0.65
   4 ?   14.1  24.3   2.6e-06    0.0036      85     270 ..     314     491 ..     299     495 .. 0.64

  Alignments for each domain:
  == domain 1    score: 0.3 bits;  conditional E-value: 0.041
   TIGR01843  80 eadaaelesqvlaleaevarlraeanseeaiefpdillsaedavaelvkeqeslfesrksalraqlesleaqikqleaeleglqaqlqalrqqleliseelealrkLkekglvsrlelLelereraelqgelaeleaeleklkaeldeleek 231
                 e++ +  +++  +lea++  l++ +++++++   +++l +   v ++++++ ++ ++r++  +++l++ +++ ++l+  +++l+++ ++l  +l    e+ e++++L  +  ++r+++  le+++++l+++ +  eael+++k++l+++ + 
  MMETSP1137-20121227|5382_1  94 EQQRDTKQAKIDTLEADIMTLKVNIEGQKSLLXTKDMLYN--FVLTSLQKKIRDTDARAACAEEKLQRRNEEARRLQGXINKLDEENRSLHXDL---REQKEMVSSLLVQLCTNRSKINGLEQKVESLESDKKAVEAELTETKKALADAVAT 240
                 2222222333333333333333333333332222222221..3444444444444444444444444444444444444444444444444443...2444444444444445555555555555555555555555555544444444333 PP

  == domain 2    score: 1.7 bits;  conditional E-value: 0.016
   TIGR01843 125 elvkeqeslfesrksalraqlesleaqikqleaeleglqaqlqalrqqleliseelealrk.LkekglvsrlelLelereraelqgelaeleaeleklkaeldeleeklqeleqkfreevseelreaqarlaeleeelsk 263
                 + ++e+++ ++  +++ ++++ sl  q+  ++++++gl++++++l+++ ++++ el+ ++k L++  ++   ++  l re+  + g+++ l+a++  ++a ++++++ l+  ++++ +++ +e+r   +  + l ee ++
  MMETSP1137-20121227|5382_1 172 NKLDEENRSLHXDLREQKEMVSSLLVQLCTNRSKINGLEQKVESLESDKKAVEAELTETKKaLADAVATHAXQIDVLRRELLGMDGQIDLLKADIRHQEAVANRVKAALEDEVKDLEQKLATEVRHKDSLASLLAEETTR 311
                 44555666666777777888999999999*******************99999999877662666666666666668899999******999999999999999999888888888888888887766655555555444 PP

  == domain 3    score: 4.8 bits;  conditional E-value: 0.0018
   TIGR01843  82 daaelesqvlaleaevarlraeanseeaiefpdillsaed.avaelvkeqeslfesrksalraqlesleaqikqleaeleglqaqlqalrqqleliseelea 182
                 +++ l++  + +ea ++r++a +++e   ++++ l++  + +++ ++++  ++ + r++al +   +l+++++ leae ++l+a++++l+ +l+l++e++ a
  MMETSP1137-20121227|5382_1 258 QIDLLKADIRHQEAVANRVKAALEDEV-KDLEQKLAT--EvRHKDSLASLLAEETTRNNALTQHNRALQEKVAHLEAENRSLAANVAELEGKLRLAEEKILA 356
                 566677777888888888888866665.445555555..225555555566666667777777777777777777777777777777777777777776655 PP

  == domain 4    score: 14.1 bits;  conditional E-value: 2.6e-06
   TIGR01843  85 elesqvlaleaevarlraeanseeaiefpdillsaedavaelvkeqeslfesrksalraqlesleaqikqleaeleglqaqlqalrqqleliseelea.lrkLkekglvsrlelLelereraelqgelaeleae.leklkaeldeleeklqeleqkfre...evseelreaqarlaeleeelskardrlqr 270
                 +l++  +al+ +va l+ae +s +a               + ++++ +l e++  al+aq+  l+++++ql++++++l++q+++l+++l  + e++e  +++L+e+ + ++++ L+ erer+e  ++ ++++ + +++ ++el++l+++ q l +++ +   e ++e++ a++r ++l++e + ++ rl+ 
  MMETSP1137-20121227|5382_1 314 ALTQHNRALQEKVAHLEAENRSLAA-------------NVAELEGKLRLAEEKILALEAQISGLQREVQQLRSRIQQLEQQVATLQRELAGAREQVEFlQNNLAEERAGREADRLAYERERQEQAEAHRRERDHvRAAHAQELEQLRRQHQALLNDWSQqnfESRQERDAARTRATQLSNECNDLNARLTA 491
                 2333444444444444444444444.............444445555555555555555666666666666666666666666655555555555554146899****************988766666666551566678899*********99999833346788899999999999999999888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (515 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       548  (0.133593); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                        10  (0.00243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.93u 0.17s 00:00:01.10 Elapsed: 00:00:00.96
# Mc/sec: 708.07
//
Query:       MMETSP1137-20121227|5383_1  [L=473]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.4e-71  236.5   0.0    1.1e-70  236.1   0.0    1.1  1  TIGR00225 prc: C-terminal processing peptidase
    3.6e-70  234.9   0.5    4.3e-70  234.6   0.4    1.0  1  TIGR03900 prc_long_Delta: putative carboxyl-terminal-processing protease, deltaproteobacterial
    0.00017   18.4   0.0    0.00024   17.9   0.0    1.2  1  TIGR00054 TIGR00054: RIP metalloprotease RseP
     0.0022   14.8   0.0     0.0033   14.2   0.0    1.2  1  TIGR02037 degP_htrA_DO: peptidase Do
     0.0077   13.0   0.0      0.015   12.1   0.0    1.4  1  TIGR02860 spore_IV_B: stage IV sporulation protein B


Domain annotation for each model (and alignments):
>> TIGR00225  prc: C-terminal processing peptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  236.1   0.0   1.4e-73   1.1e-70       4     304 ..     160     472 ..     157     473 .] 0.88

  Alignments for each domain:
  == domain 1    score: 236.1 bits;  conditional E-value: 1.4e-73
   TIGR00225   4 yvkrrldekeevetaikeilaslndpytrylskeeakelsettsgeleGiGiqvqmeddeivivsplegsPAekagikpgDkIikvdgksvagmelddavelirGkkgtkvkleierag.kkktlelelkrekieletvkaevkkvegkkvgyirissFsehtaedvkkalkkl.........ekkkikglilDLRgNpGGllqeavelarlflkkgk.ivsvkdrn...gekeveykangkqkl..klplvvlvdrgsASAsEilagAlkdnkravivGektfGKGtvQqvrelndgsglkvTiakyytpngksiq 304
                 yv++++d    ++++  +++ s  dpy++y + ++a++l   tsg + G+G++++ + d++++   leg  A  ag+++gD+I+k+d+++v g++ld + + +rG++gt+v+l ++r g ++  l l l r+ + l  + + ++      vgyi++++F e+ta++++ a+++l          k   ++l+lDLR+NpGGll +av+++++++++g+ ivs++ r    + + ++y++ +  +l  +++lvvlv+r +ASA+Ei++g ++d+ r v+vG++tfGKG+vQ v +l  g+ lk+T+akyytp+g+ iq
  MMETSP1137-20121227|5383_1 160 YVEQEVDID-RLFQTGVNAMLSSLDPYSTYENARQAEDLFLRTSGRYGGVGLTIGRDGDDVLVLGALEG-FAFDAGVRAGDRILKIDNQPVRGLDLDRVKAMLRGEPGTNVQLLVQRDGaTESDLALDLGRKLVRLPDIPLATEMRP--GVGYIKLDGFTEGTADEMAAAIRNLalpdpdaaeAKPPLQALVLDLRDNPGGLLDAAVAVSQQLVPEGThIVSTAGRVyggEGSSLSYSSAKPPLLppDTRLVVLVNRNTASAAEIVTGVVQDTDRGVVVGQRTFGKGLVQIVEPLPGGASLKLTVAKYYTPSGRCIQ 472
                 555555555.44444455555667*******************************************98.5***********************************************98999****************99887766..79*********************99444443332366789****************************99*****996221233456666666666899******************************************************************998 PP

>> TIGR03900  prc_long_Delta: putative carboxyl-terminal-processing protease, deltaproteobacterial
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  234.6   0.4   5.3e-73   4.3e-70      85     394 ..     151     472 ..     126     473 .] 0.89

  Alignments for each domain:
  == domain 1    score: 234.6 bits;  conditional E-value: 5.3e-73
   TIGR03900  85 evleFiekhlrlteedlrdvEYAavnGlLstLDPHsvlLePeafkemklktrGeFGGlGiviamRdrkltVlrvlpetPAaraGlkakDrivkideestvnmdlndavdrlRGpvdtkvtitvrReGldea.krleleRavikvesV.eaklLegnvGyvrlktFsantteeleaalqdlrska........qlkGlVlDlRgNpGGLLeqAievsdkFlsqGt.iVstvgaserreekkakedtseeakvP....vvvlVdegSASAsEiVaGalknlDRaviiGrqtFGKGsVqvlrdatsadksaLKLtiAqYltpGDvsiq 394
                 ++le +++  + +e d   +    vn +Ls+LDP s+  + ++++++ l+t+G++GG+G+ i+     ++Vl  l +  A  aG++a Dri+kid++    +dl+     lRG+++t+v + v+R+G  e   +l+l R++++++ +  a  +  +vGy++l  F + t+ e+ aa+++l             l+ lVlDlR+NpGGLL++A+ vs++ + +Gt iVst g     e ++ +   +++  +P    +vvlV+++ ASA+EiV+G +++ DR+v++G++tFGKG Vq++++    + + LKLt+A+Y tp  + iq
  MMETSP1137-20121227|5383_1 151 AILEDVNDAYVEQEVDIDRLFQTGVNAMLSSLDPYSTYENARQAEDLFLRTSGRYGGVGLTIGRDGDDVLVLGALEG-FAFDAGVRAGDRILKIDNQPVRGLDLDRVKAMLRGEPGTNVQLLVQRDGATESdLALDLGRKLVRLPDIpLATEMRPGVGYIKLDGFTEGTADEMAAAIRNLALPDpdaaeakpPLQALVLDLRDNPGGLLDAAVAVSQQLVPEGThIVSTAGRVYGGEGSSLSYSSAKPPLLPpdtrLVVLVNRNTASAAEIVTGVVQDTDRGVVVGQRTFGKGLVQIVEP--LPGGASLKLTVAKYYTPSGRCIQ 472
                 677888888888888899999999***************************************8889999**99976.6999********************************************98665279*************877778889**********************9964322234556689*****************************779***997766555444444444444333333********************************************..999***************99999 PP

>> TIGR00054  TIGR00054: RIP metalloprotease RseP
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.0   2.9e-07   0.00024     215     262 ..     229     278 ..     189     318 .. 0.87

  Alignments for each domain:
  == domain 1    score: 17.9 bits;  conditional E-value: 2.9e-07
   TIGR00054 215 aekaGlkeGDkilkidgeklk..swrdlvklvkenpeksleikveRnget 262
                 a  aG+++GD+ilkid+++++  +   +  +++  p+ ++++ v+R+g t
  MMETSP1137-20121227|5383_1 229 AFDAGVRAGDRILKIDNQPVRglDLDRVKAMLRGEPGTNVQLLVQRDGAT 278
                 668****************983244567889*****************66 PP

>> TIGR02037  degP_htrA_DO: peptidase Do
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.0   4.1e-06    0.0033     270     321 ..     227     279 ..     219     301 .. 0.85

  Alignments for each domain:
  == domain 1    score: 14.2 bits;  conditional E-value: 4.1e-06
   TIGR02037 270 spAekaGlkaGDvilkvngkkiksaa.dlreaigtlkpgkkvklkilRkgkek 321
                 + A  aG++aGD ilk+++++++  + d  +a+ + +pg++v+l + R+g+++
  MMETSP1137-20121227|5383_1 227 GFAFDAGVRAGDRILKIDNQPVRGLDlDRVKAMLRGEPGTNVQLLVQRDGATE 279
                 56889*****************987635566778899*************864 PP

>> TIGR02860  spore_IV_B: stage IV sporulation protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.1   0.0   1.9e-05     0.015     128     172 ..     231     277 ..     222     283 .. 0.86

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 1.9e-05
   TIGR02860 128 eagiqvGDlilkvngekike..eedvaklineaggeklkltikRkkk 172
                  ag++ GD+ilk+++++++    + v+ +++ + g +++l ++R+++
  MMETSP1137-20121227|5383_1 231 DAGVRAGDRILKIDNQPVRGldLDRVKAMLRGEPGTNVQLLVQRDGA 277
                 79****************9722578999999999**********986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (473 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       107  (0.0260848); expected 82.0 (0.02)
Passed bias filter:                       98  (0.0238908); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.39u 0.13s 00:00:00.52 Elapsed: 00:00:00.47
# Mc/sec: 1328.32
//
Query:       MMETSP1137-20121227|5384_1  [L=434]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (434 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        63  (0.0153584); expected 82.0 (0.02)
Passed bias filter:                       34  (0.00828864); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.14s 00:00:00.46 Elapsed: 00:00:00.73
# Mc/sec: 784.70
//
Query:       MMETSP1137-20121227|5385_1  [L=154]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00027   16.5   1.1    0.00031   16.4   0.8    1.0  1  TIGR02169 SMC_prok_A: chromosome segregation protein SMC
     0.0003   16.4   1.7    0.00035   16.2   1.2    1.0  1  TIGR02168 SMC_prok_B: chromosome segregation protein SMC
  ------ inclusion threshold ------
       0.04   10.7   1.4       0.05   10.4   1.0    1.2  1  TIGR01843 type_I_hlyD: type I secretion membrane fusion protein, HlyD family


Domain annotation for each model (and alignments):
>> TIGR02169  SMC_prok_A: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.8   2.2e-07   0.00031     699     788 ..      36     125 ..       9     144 .. 0.40

  Alignments for each domain:
  == domain 1    score: 16.4 bits;  conditional E-value: 2.2e-07
   TIGR02169 699 rriekrldelssklsdaekkieeiekeleqleeeeeklkerleeleeklseleeeleekkeelkeleaeieeleeklaklkealedleae 788
                 +++++  +++s  + + e +++++eke+++l++  ++ k++++ l+ + ++le+ +++++e  ++ ++ i   e k +  k+a++  ++ 
  MMETSP1137-20121227|5385_1  36 ESQRRLCSNVSGVIVQKELRLKQLEKEIQALADGVHEYKAQIDLLQGEKQSLEKRIAKNQEWCDTFDSSIGPFEDKYETSKAAVKTSYDY 125
                 222233333333333333333333333333333333333333333333333333333333333333333333333333333333333322 PP

>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   1.2   2.6e-07   0.00035     744     822 ..      42     120 ..      17     141 .. 0.31

  Alignments for each domain:
  == domain 1    score: 16.2 bits;  conditional E-value: 2.6e-07
   TIGR02168 744 veqleerlaqlekeleeleeereeleeeleeaeeelkeaeeeieeleaeieqlkeelkalrealseleaeltelkeeaa 822
                 + +++  + q+e +l++le+e+++l++ ++e +++++  + e+++le++i++ +e +++ ++++  +e+++++ k++++
  MMETSP1137-20121227|5385_1  42 CSNVSGVIVQKELRLKQLEKEIQALADGVHEYKAQIDLLQGEKQSLEKRIAKNQEWCDTFDSSIGPFEDKYETSKAAVK 120
                 2222222222222222222222222222222222222222222222222222222222222222222222222222222 PP

>> TIGR01843  type_I_hlyD: type I secretion membrane fusion protein, HlyD family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   1.0   3.7e-05      0.05     110     185 ..      49     124 ..      20     138 .. 0.69

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 3.7e-05
   TIGR01843 110 iefpdillsaedavaelvkeqeslfesrksalraqlesleaqikqleaeleglqaqlqalrqqleliseelealrk 185
                 i++++  l++ +++ +++++ + +++++ + l+++++sle++i+++++  ++ ++ +  ++++ e  +  ++ +  
  MMETSP1137-20121227|5385_1  49 IVQKELRLKQLEKEIQALADGVHEYKAQIDLLQGEKQSLEKRIAKNQEWCDTFDSSIGPFEDKYETSKAAVKTSYD 124
                 3334333443347777778888899999999999999999999999999999999999999888888877776655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (154 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       279  (0.0680156); expected 82.0 (0.02)
Passed bias filter:                      217  (0.052901); expected 82.0 (0.02)
Passed Vit filter:                        28  (0.00682594); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.26u 0.19s 00:00:00.45 Elapsed: 00:00:00.46
# Mc/sec: 441.88
//
Query:       MMETSP1137-20121227|5386_1  [L=317]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (317 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       127  (0.0309605); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.14s 00:00:00.39 Elapsed: 00:00:00.40
# Mc/sec: 1046.01
//
Query:       MMETSP1137-20121227|5387_1  [L=502]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (502 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       108  (0.0263286); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.14s 00:00:00.47 Elapsed: 00:00:00.53
# Mc/sec: 1250.16
//
Query:       MMETSP1137-20121227|5388_1  [L=421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (421 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       218  (0.0531448); expected 82.0 (0.02)
Passed bias filter:                      120  (0.029254); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.17s 00:00:00.50 Elapsed: 00:00:00.46
# Mc/sec: 1207.99
//
Query:       MMETSP1137-20121227|5389_1  [L=398]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        0.4    7.7  18.8       0.04   11.0   9.2    2.1  2  TIGR00599 rad18: DNA repair protein rad18


Domain annotation for each model (and alignments):
>> TIGR00599  rad18: DNA repair protein rad18
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.2      0.13   5.4e+02     118     118 ..     116     116 ..      53     174 .. 0.56
   2 ?   11.0   9.2   9.8e-06      0.04      27      67 ..     279     322 ..     274     390 .. 0.91

  Alignments for each domain:
  == domain 1    score: -2.6 bits;  conditional E-value: 0.13
   TIGR00599 118 s 118
                 +
  MMETSP1137-20121227|5389_1 116 A 116
                 2 PP

  == domain 2    score: 11.0 bits;  conditional E-value: 9.8e-06
   TIGR00599  27 lRChvCkdffka...PvltsCsHtFCslCiRrcLseepkCPlCr 67 
                 + C +C++ +++   Pv+t C+H FC  C  r+ ++  +C +C 
  MMETSP1137-20121227|5389_1 279 FACLICREPWHKasrPVVTKCEHYFCEACALRHFQKSRRCFTCG 322
                 67*****96642244****************************6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (398 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       172  (0.0419308); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.30u 0.14s 00:00:00.44 Elapsed: 00:00:00.68
# Mc/sec: 772.52
//
Query:       MMETSP1137-20121227|5390_1  [L=177]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (177 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        74  (0.01804); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.16s 00:00:00.34 Elapsed: 00:00:00.40
# Mc/sec: 584.05
//
Query:       MMETSP1137-20121227|5391_1  [L=490]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   9.7e-107  354.5   0.0   1.2e-106  354.1   0.0    1.1  1  TIGR01139 cysK: cysteine synthase A
   2.6e-103  343.3   0.0   3.3e-103  343.0   0.0    1.1  1  TIGR01136 cysKM: cysteine synthases
    8.5e-69  230.1   0.0      1e-65  220.0   0.0    2.1  1  TIGR01138 cysM: cysteine synthase B
    4.9e-68  227.7   0.0    6.8e-68  227.2   0.0    1.1  1  TIGR01137 cysta_beta: cystathionine beta-synthase
    3.3e-57  191.7   0.0    9.3e-45  150.8   0.0    2.0  2  TIGR03945 PLP_SbnA_fam: 2,3-diaminopropionate biosynthesis protein SbnA
    9.6e-15   52.2   0.0    1.4e-14   51.7   0.0    1.1  1  TIGR01127 ilvA_1Cterm: threonine dehydratase
    4.8e-14   49.8   0.0    7.6e-14   49.1   0.0    1.3  1  TIGR02079 THD1: threonine dehydratase
    1.3e-13   48.2   0.0    1.7e-13   47.8   0.0    1.1  1  TIGR01124 ilvA_2Cterm: threonine ammonia-lyase, biosynthetic
    2.6e-12   44.2   0.0    5.8e-12   43.0   0.0    1.5  1  TIGR02991 ectoine_eutB: ectoine utilization protein EutB
    9.5e-09   32.7   0.1    5.9e-08   30.1   0.0    1.9  2  TIGR00260 thrC: threonine synthase
    1.5e-06   25.1   0.1    1.3e-05   21.9   0.0    2.3  3  TIGR01415 trpB_rel: pyridoxal-phosphate dependent TrpB-like enzyme
    2.6e-06   24.1   0.0    3.9e-06   23.5   0.0    1.3  1  TIGR03528 2_3_DAP_am_ly: diaminopropionate ammonia-lyase
    2.9e-06   24.2   0.1      5e-06   23.4   0.0    1.3  1  TIGR01747 diampropi_NH3ly: diaminopropionate ammonia-lyase family
    8.9e-06   22.8   0.1    0.00035   17.6   0.0    2.4  2  TIGR00263 trpB: tryptophan synthase, beta subunit
     0.0026   14.4   0.0     0.0048   13.5   0.0    1.3  1  TIGR03844 cysteate_syn: cysteate synthase


Domain annotation for each model (and alignments):
>> TIGR01139  cysK: cysteine synthase A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  354.1   0.0  4.4e-109  1.2e-106       2     298 .]      67     382 ..      66     382 .. 0.97

  Alignments for each domain:
  == domain 1    score: 354.1 bits;  conditional E-value: 4.4e-109
   TIGR01139   2 seliGntPlvrLn.laeeakaevlvkleslnPsssvkdrialamiedaekegllkkgktiveatsGntGialamvaaargykliltmpetmslerrkllkayGaelvLtdgaegmkgaiekaeelveetpnkylllkqfenpanpeihrkttapeilkdldgk.ldafvagvGtGGtitGvgevlkekkpdikvvavePaespvlsgg................kpgphkiqGigagfiPkvLd...kevidevikvsdeeaietarrlakeeGilvGissGaavaaalkvakklekdkkivvilpdtgerYlstaLf 298
                 +++iGntP+v+L     +  + v++k+e++nP +svkdr+ala+i+dae++g+lk+g+t+veatsGntGia+amv+a+rgyk ++tm+e +s+err+l++++Ga++++t+ a + +g+++kaeel e+++  ++l +qfen+an + h++tt++eil+d++gk ld  v+g+GtGGt  Gv+++lk ++p++k+v +eP+++ +l+ g                   ph iqG++++fiPkvL+   +e ++e++ +   +aieta+ la++eG+l+Gis+G +++aal++akk+ k+ +i+++lpdtgerYlst+L+
  MMETSP1137-20121227|5391_1  67 THTIGNTPVVKLSeKLVPEGVTVYAKCEFFNPLASVKDRLALAIIQDAEERGVLKPGDTVVEATSGNTGIAVAMVCAQRGYKCVITMAEPFSVERRRLMRMLGAKVIVTPKAGKGTGMVRKAEELCEKHG--WFLCHQFENEANWKFHEATTGQEILNDFEGKqLDYWVTGYGTGGTFHGVSKALKANRPEVKIVLAEPEDAGLLKSGikterkedgaplgthpAFTPHPIQGWTPDFIPKVLEdagMEAVHELMPIPGAKAIETAKLLAANEGLLTGISGGGTMWAALETAKKAPKGSVILAMLPDTGERYLSTPLY 382
                 789*********98888899**************************************************************************************************************..99***************************988*****************************************9999************988889****************83334678899999***********************************************************98 PP

>> TIGR01136  cysKM: cysteine synthases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  343.0   0.0  1.2e-105  3.3e-103       2     299 .]      67     382 ..      66     382 .. 0.96

  Alignments for each domain:
  == domain 1    score: 343.0 bits;  conditional E-value: 1.2e-105
   TIGR01136   2 eeliGntPlvrln.lseelkaevlvKlEsrnPsgSvKdRialsmildAekrgllkkgktiieatSGNtGiaLAmvaaakgyklilvmpetmslERrkllkayGaelvlteaeegmkgaiekakelaeeepekyvllkqfeNpaNpeaHrkttgpEilkdtdgk.idafvagvGtgGtitGvgrvlkekkpnvkivavePaespvlseg................kpgphkiqgigagfiPkilde...elldevikvededaietarrlakeegilvGiSsGaavaaalkvakklekedkkivvilpdagerYLstelf 299
                 +++iGntP+v+l        ++v++K+E++nP +SvKdR al++i+dAe+rg+lk+g+t++eatSGNtGia+Amv+a++gyk +++m e +s+ERr+l++++Ga++++t+++ + +g+++ka+el e+++  ++l +qfeN+aN++ H++ttg+Eil+d++gk +d  v+g+GtgGt  Gv+++lk ++p+vkiv +eP+++ +l +g                   ph iqg++++fiPk+l+    e ++e++ +   +aieta+ la++eg+l+GiS G++++aal+ akk+  ++++i+++lpd+gerYLst+l+
  MMETSP1137-20121227|5391_1  67 THTIGNTPVVKLSeKLVPEGVTVYAKCEFFNPLASVKDRLALAIIQDAEERGVLKPGDTVVEATSGNTGIAVAMVCAQRGYKCVITMAEPFSVERRRLMRMLGAKVIVTPKAGKGTGMVRKAEELCEKHG--WFLCHQFENEANWKFHEATTGQEILNDFEGKqLDYWVTGYGTGGTFHGVSKALKANRPEVKIVLAEPEDAGLLKSGikterkedgaplgthpAFTPHPIQGWTPDFIPKVLEDagmEAVHELMPIPGAKAIETAKLLAANEGLLTGISGGGTMWAALETAKKAP-KGSVILAMLPDTGERYLSTPLY 382
                 789*********985555589***********************************************************************************************************87..99***************************988****************************************999999***********988889****************9722256777788999************************************9.79******************98 PP

>> TIGR01138  cysM: cysteine synthase B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  220.0   0.0   3.8e-68     1e-65       2     290 .]      66     382 ..      65     382 .. 0.87

  Alignments for each domain:
  == domain 1    score: 220.0 bits;  conditional E-value: 3.8e-68
   TIGR01138   2 ilklvGntplvrlkrllpeedsevlvklegnnpaGsvkdrpalsmiveaekrGeikeGdvlieatsGntGialamvaalkGykvkllmpdnvseerkaalkayGaelilvdkeeGmeGardlarelvrkgeeklldqfnnpdnpkahytstGieiwqqtkGr.ithfvsslGttGtimGvsrflkeqnpavqivGlqpaegsa.ieGlrr......................ieseylpgifdas...lvdrvvdveqedaediarelakkegifvGvssGgavaaalrlarelek.avvvaiicdrGdrylstgvf 290
                 +++++Gntp+v+l   l  e+++v++k e +np  svkdr al++i +ae rG +k+Gd+++eatsGntGia+amv+a +Gyk  + m +  s er++ ++  Ga++i++ k     G +  a+el +k    l  qf+n +n+k h  +tG ei +  +G+ + ++v++ Gt+Gt  Gvs+ lk + p+v+iv  +p+++     G++                       +  ++ p++ +++    v + + +   +a ++a+ la +eg++ G+s Gg+++aal+ a++ +k +v++a+++d G+rylst ++
  MMETSP1137-20121227|5391_1  66 VTHTIGNTPVVKLSEKLVPEGVTVYAKCEFFNPLASVKDRLALAIIQDAEERGVLKPGDTVVEATSGNTGIAVAMVCAQRGYKCVITMAEPFSVERRRLMRMLGAKVIVTPKAGKGTGMVRKAEELCEKHGWFLCHQFENEANWKFHEATTGQEILNDFEGKqLDYWVTGYGTGGTFHGVSKALKANRPEVKIVLAEPEDAGLlKSGIKTerkedgaplgthpaftphpiqgWTPDFIPKVLEDAgmeAVHELMPIPGAKAIETAKLLAANEGLLTGISGGGTMWAALETAKKAPKgSVILAMLPDTGERYLSTPLY 382
                 5689*********9988889****************************************************************************************9999988899999********99999************************999637899***************************99998754323344321112222222222222222222888999***998722246677888999***********************************997899**************987 PP

>> TIGR01137  cysta_beta: cystathionine beta-synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  227.2   0.0   2.5e-70   6.8e-68       3     309 ..      64     380 ..      62     400 .. 0.87

  Alignments for each domain:
  == domain 1    score: 227.2 bits;  conditional E-value: 2.5e-70
   TIGR01137   3 dnildliGntPlvrlnkvskglkaevlakveffnaGGsvkdrialrmiedaeksGrlkpgdtliePtsGntGiGlalvaaikGykciivlPekvseekvdvlkalGaeivrtPtaaafdsPesyigvakrlekeipgavildqyanasnPlahydttgeeileqleg.kldalvagvGtGGtitGiarklkekedkvrivGadPeGs.ilaepeelnktek..........tdykveGiGydfiPtvldr...kvvdeiiktddkesfkmarrlikeegllvgGssGsavvaalkvaeeelkeddvivvllpdsirnyltkf 309
                 +++ + iGntP+v+l +       +v+ak+effn+  svkdr+al +i+dae+ G lkpgdt++e tsGntGi +a+v+a++Gykc+i++ e  s e++ +++ lGa +++tP a +       +  a+ l  e  g +   q++n  n + h  ttg+eil++ eg +ld  v+g GtGGt  G+++ lk++ ++v+iv a+Pe + +l  + + ++ e           t++ ++G   dfiP+vl+    + v e++     ++ + a+ l+++egll g s G ++ aal++a+ +  ++ vi+++lpd++  yl+  
  MMETSP1137-20121227|5391_1  64 QDVTHTIGNTPVVKLSEKLVPEGVTVYAKCEFFNPLASVKDRLALAIIQDAEERGVLKPGDTVVEATSGNTGIAVAMVCAQRGYKCVITMAEPFSVERRRLMRMLGAKVIVTPKAGK---GTGMVRKAEELC-EKHGWFLCHQFENEANWKFHEATTGQEILNDFEGkQLDYWVTGYGTGGTFHGVSKALKANRPEVKIVLAEPEDAgLLKSGIKTERKEDgaplgthpafTPHPIQGWTPDFIPKVLEDagmEAVHELMPIPGAKAIETAKLLAANEGLLTGISGGGTMWAALETAK-KAPKGSVILAMLPDTGERYLSTP 380
                 7899***********7544444579****************************************************************************************9865...567889999996.66899999**************************569**********************************9642333332222222111222222337899*************96333678899999************************************.888999**************975 PP

>> TIGR03945  PLP_SbnA_fam: 2,3-diaminopropionate biosynthesis protein SbnA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  150.8   0.0   3.4e-47   9.3e-45       2     197 ..      67     259 ..      66     268 .. 0.93
   2 !   38.9   0.0   4.1e-13   1.1e-10     222     297 ..     301     379 ..     285     384 .. 0.85

  Alignments for each domain:
  == domain 1    score: 150.8 bits;  conditional E-value: 3.4e-47
   TIGR03945   2 lsligntplvkleklfedekvelfaKlEglnpagSvKdrtAlallekaikegeikpgttiiESsSGnlaiaLamvcaalGlkficvvDpkiseanlkllralgaevevveekdetggyLkaRlarvrellaeipdavwlNQYaneanaeahyettaeeileelk..evdylfvgvsttGtlaGvarrlrekspevkvv 197
                 +++igntp+vkl++ +  e v+++aK+E +np  SvKdr Ala++++a+++g +kpg+t++E +SGn +ia+amvca++G+k ++ +    s + ++l+r+lga+v v  +  +  g     +++ +el+++ +  + + Q++nean++ h  tt++eil++++  ++dy + g +t+Gt +Gv+++l+ ++pevk+v
  MMETSP1137-20121227|5391_1  67 THTIGNTPVVKLSEKLVPEGVTVYAKCEFFNPLASVKDRLALAIIQDAEERGVLKPGDTVVEATSGNTGIAVAMVCAQRGYKCVITMAEPFSVERRRLMRMLGAKVIVTPKAGKGTGM----VRKAEELCEK-HGWFLCHQFENEANWKFHEATTGQEILNDFEgkQLDYWVTGYGTGGTFHGVSKALKANRPEVKIV 259
                 689*********9999999**************************************************************************************9877666664443....5678888875.688999************************9999******************************8 PP

  == domain 2    score: 38.9 bits;  conditional E-value: 4.1e-13
   TIGR03945 222 svvpelldes...lidevvkvseletvaacrelleregilaGgSsGtvvaavkkllakieegstvvailpDrGerYldt 297
                    p++l+++    ++e++ ++ ++++ +++ l+++eg+l+G S G++++a+ + ++k ++gs ++a+lpD+GerYl+t
  MMETSP1137-20121227|5391_1 301 DFIPKVLEDAgmeAVHELMPIPGAKAIETAKLLAANEGLLTGISGGGTMWAALETAKKAPKGSVILAMLPDTGERYLST 379
                 55666666641115678899*********************************************************98 PP

>> TIGR01127  ilvA_1Cterm: threonine dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.7   0.0   5.2e-17   1.4e-14      14     198 ..      86     278 ..      75     283 .. 0.88

  Alignments for each domain:
  == domain 1    score: 51.7 bits;  conditional E-value: 5.2e-17
   TIGR01127  14 gaevylklenlqktGsfkirGalnkiaklseeek...krGvvaasaGnhaqGvalaakvfgikakivmPesaplskvkatksyGaeviLhGadf..DeayklaeelaeeegrvfvhafdDefvia.GqGtlgleiledl..pdvdtvivPvGGGGLisGvasavkklnpevkviGveaeaapslveslkegki 198
                 g  vy k e +    s k r al  i+ + e +       vv a++Gn    va+   + g k++i m e   +++ +  + +Ga+vi+  +        + aeel e++g  + h f++e      + t g eil+d    ++d  +   G GG   Gv+ a+k   pevk++  e e a  l+  +k ++ 
  MMETSP1137-20121227|5391_1  86 GVTVYAKCEFFNPLASVKDRLALAIIQDAEERGVlkpGDTVVEATSGNTGIAVAMVCAQRGYKCVITMAEPFSVERRRLMRMLGAKVIVTPKAGkgTGMVRKAEELCEKHGWFLCHQFENEANWKfHEATTGQEILNDFegKQLDYWVTGYGTGGTFHGVSKALKANRPEVKIVLAEPEDAGLLKSGIKTERK 278
                 5679***********************9999875211457************************************************98765411457899****************99876542789********863269********************************999999988888877665 PP

>> TIGR02079  THD1: threonine dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.1   0.0   2.8e-16   7.6e-14       9     217 ..      65     276 ..      61     373 .. 0.86

  Alignments for each domain:
  == domain 1    score: 49.1 bits;  conditional E-value: 2.8e-16
   TIGR02079   9 rlkevvketPlqknerlsekykaeiylkredlqevrsyklrGaynklkqlsdeel...ekgvvcasaGnhaqGvayacrklgvkgtvfmPvttPkqkvdkvklfGgefievilvGdtfdeaaaaakkavekegktlipPfddkdiie.GqgtvaveileqleeekidlvlvpvGGGGlisGvtsylkekskktkiigvePeGapslkaslkag 217
                  + + + +tP+ k ++     ++++y k e ++ + s k r a   ++   + +     ++vv a++Gn    va  c + g k ++ m       ++  +++ G + i     G+       +a++ +ek+g  l + f++++  +   +t + eil+++e ++ d+ + + G GG   Gv+  lk++ ++ ki+  ePe a  lk+ +k++
  MMETSP1137-20121227|5391_1  65 DVTHTIGNTPVVKLSEKLVPEGVTVYAKCEFFNPLASVKDRLALAIIQDAEERGVlkpGDTVVEATSGNTGIAVAMVCAQRGYKCVITMAEPFSVERRRLMRMLGAKVIVTPKAGKGT-GMVRKAEELCEKHGWFLCHQFENEANWKfHEATTGQEILNDFEGKQLDYWVTGYGTGGTFHGVSKALKANRPEVKIVLAEPEDAGLLKSGIKTE 276
                 56677788887654444455689************************99888765212468****************************99999999999******999888888775.56789*****************9987763689****************************************************9999887754 PP

>> TIGR01124  ilvA_2Cterm: threonine ammonia-lyase, biosynthetic
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.8   0.0   6.3e-16   1.7e-13      18     213 ..      73     275 ..      59     286 .. 0.83

  Alignments for each domain:
  == domain 1    score: 47.8 bits;  conditional E-value: 6.3e-16
   TIGR01124  18 tplekaaklserl...knrvllkredlqpvfsfklrGaynkmaqlsae...qkakGviaasaGnhaqGvalsakklGvkavivmpettpeikvdavkafGgevvlhGenyd..eakakalelaqekgltfiapfddplvi.aGqGtvalellrqve.edldavfvpvGGGGliaGvaalvkqllpeikvigveaedsaalkqalea 213
                 tp+    klse+l   + +v+ k e  +p+ s k r a + + +  +    +    v+ a++Gn    va+ +++ G k vi m e  +  +   ++  G++v++  ++ +      ka el +++g    + f+++        t + e+l+  e ++ld+     G GG   Gv+  +k+ +pe+k++  e+ed+  lk  +++
  MMETSP1137-20121227|5391_1  73 TPV---VKLSEKLvpeGVTVYAKCEFFNPLASVKDRLALAIIQDAEERgvlKPGDTVVEATSGNTGIAVAMVCAQRGYKCVITMAEPFSVERRRLMRMLGAKVIVTPKAGKgtGMVRKAEELCEKHGWFLCHQFENEANWkFHEATTGQEILNDFEgKQLDYWVTGYGTGGTFHGVSKALKANRPEVKIVLAEPEDAGLLKSGIKT 275
                 444...45666552225789********************9988766522233567******************************99999999**********98776551145789****************99876615789*******987626888888899*******************************99998876 PP

>> TIGR02991  ectoine_eutB: ectoine utilization protein EutB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.0   0.0   2.1e-14   5.8e-12      14     199 ..      67     260 ..      61     279 .. 0.83

  Alignments for each domain:
  == domain 1    score: 43.0 bits;  conditional E-value: 2.1e-14
   TIGR02991  14 agrveetplveseslsellGvpvllklesrqttGsfklrGatnavlslsda...eraaGvvaastGnhGralayaakkegvravicmselvpqnkvdeirrlGaevrivGrsqdda..qeeverlvkerGlvmlppfdhadiv.aGqGtlglevveqvp..dlalvlvplsGGGlasGvavavkalkpatrviG 199
                 +  + +tp+v+ +      Gv v  k e  ++  s k r a   +   ++    +    vv a++Gn G a+a   ++ g ++vi m+e   +++   +r+lGa+v +  ++   +   ++ e l +++G  +   f++++     + t g e++++    +l+  +     GG   Gv+ a+ka +p+++++ 
  MMETSP1137-20121227|5391_1  67 THTIGNTPVVKLSEKLVPEGVTVYAKCEFFNPLASVKDRLALAIIQDAEERgvlKPGDTVVEATSGNTGIAVAMVCAQRGYKCVITMAEPFSVERRRLMRMLGAKVIVTPKAGKGTgmVRKAEELCEKHGWFLCHQFENEANWkFHEATTGQEILNDFEgkQLDYWVTGYGTGGTFHGVSKALKANRPEVKIVL 260
                 5678899999865555668**********************9999877664211234579**********************************************9988776544116789***************99876516789********9862256777788889******************9975 PP

>> TIGR00260  thrC: threonine synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.1   0.0   2.2e-10   5.9e-08      26     103 ..      76     152 ..      62     173 .. 0.82
   2 ?   -0.0   0.0       0.3        83     279     314 ..     324     359 ..     304     371 .. 0.81

  Alignments for each domain:
  == domain 1    score: 30.1 bits;  conditional E-value: 2.2e-10
   TIGR00260  26 frspklaeevgaenlyvkelfhgPtlaFKDrglqfvavlltkalelgne....tvlcAtsGdtgaaaaealagkanvkvvvL 103
                 ++  +   + g   +y k +f +P  + KDr       +++ a e+g+     tv+ AtsG+tg a+a +  ++ + k+v+ 
  MMETSP1137-20121227|5391_1  76 VKLSEKLVPEG-VTVYAKCEFFNPLASVKDRL---ALAIIQDAEERGVLkpgdTVVEATSGNTGIAVA-MVCAQRGYKCVIT 152
                 44444333333.489****************9...566788899999878889***************.***********96 PP

  == domain 2    score: -0.0 bits;  conditional E-value: 0.3
   TIGR00260 279 eeileaikklaeeegyllephtavavaalkklvekg 314
                 +  +e+ k+la++eg+l+   ++ ++ a +++++k 
  MMETSP1137-20121227|5391_1 324 AKAIETAKLLAANEGLLTGISGGGTMWAALETAKKA 359
                 6789***************99999999988888876 PP

>> TIGR01415  trpB_rel: pyridoxal-phosphate dependent TrpB-like enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.9   0.0   4.8e-08   1.3e-05      71     181 ..      75     183 ..      63     198 .. 0.83
   2 ?   -1.8   0.0      0.79   2.2e+02     226     290 ..     212     270 ..     210     284 .. 0.69
   3 ?   -0.5   0.0       0.3        83     351     398 ..     322     366 ..     306     383 .. 0.81

  Alignments for each domain:
  == domain 1    score: 21.9 bits;  conditional E-value: 4.8e-08
   TIGR01415  71 lirakkleellgtkariyyksesvsptGshkintaiaqayyakkeGvkr...lvtetGaGqWGsalslaaalldlkvkvfmvrvsfkqkpyrkllmelygaevipsPseltevG 181
                 ++  k  e+l+   + +y k e   p  s k   a+a +  a + Gv +    v e+ +G  G a+++ +a  + k+ + m++  f   + r+ lm++ ga+vi +P     +G
  MMETSP1137-20121227|5391_1  75 VV--KLSEKLVPEGVTVYAKCEFFNPLASVKDRLALAIIQDAEERGVLKpgdTVVEATSGNTGIAVAMVCAQRGYKCVITMAEP-F--SVERRRLMRMLGAKVIVTPKAGKGTG 183
                 54..3458888889********************************964333899*************************9975.4..467999**********9997655444 PP

  == domain 2    score: -1.8 bits;  conditional E-value: 0.79
   TIGR01415 226 hqtviGleakkqleeagekPdvivgcvGGGsnfaglafPfvadklsGkedlkfiaaeskaaPklt 290
                 h++  G e+ + +e  g++ d+ v+  G G  f g++  + a++     ++k++ ae+++a  l 
  MMETSP1137-20121227|5391_1 212 HEATTGQEILNDFE--GKQLDYWVTGYGTGGTFHGVSKALKANR----PEVKIVLAEPEDAGLLK 270
                 66667777777766..5578999999999999999875544433....45566666666665555 PP

  == domain 3    score: -0.5 bits;  conditional E-value: 0.3
   TIGR01415 351 dqeevfeaavlfakaeGivPaPesahaiavaideakkareegkekvil 398
                 +  +++e+a+l+a  eG++       ++ +a ++akka++++   vil
  MMETSP1137-20121227|5391_1 322 PGAKAIETAKLLAANEGLLTGISGGGTMWAALETAKKAPKGS---VIL 366
                 556789999999999999999999999999999999998875...555 PP

>> TIGR03528  2_3_DAP_am_ly: diaminopropionate ammonia-lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.5   0.0   1.4e-08   3.9e-06     115     189 ..     125     201 ..     104     278 .. 0.89

  Alignments for each domain:
  == domain 1    score: 23.5 bits;  conditional E-value: 1.4e-08
   TIGR03528 115 tfvtatdGnhGrGvawaanklgqksvvymPkGsaqerlenirkeGaeatitdlny..ddavrlaakkaeekGwvvvq 189
                 t v at Gn G  va    + g k+v+ m    + er+  +r  Ga++++t         vr a++ +e++Gw +  
  MMETSP1137-20121227|5391_1 125 TVVEATSGNTGIAVAMVCAQRGYKCVITMAEPFSVERRRLMRMLGAKVIVTPKAGkgTGMVRKAEELCEKHGWFLCH 201
                 6799**********************************************9876511567*************9864 PP

>> TIGR01747  diampropi_NH3ly: diaminopropionate ammonia-lyase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.4   0.0   1.8e-08     5e-06      96     170 ..     125     201 ..     103     216 .. 0.86

  Alignments for each domain:
  == domain 1    score: 23.4 bits;  conditional E-value: 1.8e-08
   TIGR01747  96 tfvtatdGnhGrGvawaaeklGqkavvympkGsaqeraeniekeGaevtitdlnyd..davrlankmaqekgwvlvq 170
                 t v at Gn G  va    + G k+v+ m    + er   ++  Ga+v++t         vr a++  +++gw l  
  MMETSP1137-20121227|5391_1 125 TVVEATSGNTGIAVAMVCAQRGYKCVITMAEPFSVERRRLMRMLGAKVIVTPKAGKgtGMVRKAEELCEKHGWFLCH 201
                 6789**********************************************98765511679************8864 PP

>> TIGR00263  trpB: tryptophan synthase, beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.0   1.3e-06   0.00035     101     154 ..     125     175 ..      72     191 .. 0.77
   2 ?    2.5   0.0     0.049        13     322     378 ..     321     377 ..     307     381 .. 0.88

  Alignments for each domain:
  == domain 1    score: 17.6 bits;  conditional E-value: 1.3e-06
   TIGR00263 101 iiaetGaGqhGvatataaallglecevymGae.dverqklnvfrmellgakvvpv 154
                  + e+ +G  G+a a+++a+ g +c++ m +   ver++l    m++lgakv+  
  MMETSP1137-20121227|5391_1 125 TVVEATSGNTGIAVAMVCAQRGYKCVITMAEPfSVERRRL----MRMLGAKVIVT 175
                 688999***********************98548999997....999****9754 PP

  == domain 2    score: 2.5 bits;  conditional E-value: 0.049
   TIGR00263 322 itdeealealkllskeeGiipalesshalaaleklapklkkdeivvvnlsGrGdkdl 378
                 i  ++a+e+ kll+ +eG+++ +    ++ a+ ++a+k +k ++++  l   G++ l
  MMETSP1137-20121227|5391_1 321 IPGAKAIETAKLLAANEGLLTGISGGGTMWAALETAKKAPKGSVILAMLPDTGERYL 377
                 6668999**********************99999***********999988887655 PP

>> TIGR03844  cysteate_syn: cysteate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   0.0   1.8e-05    0.0048      98     189 ..     100     197 ..      88     205 .. 0.81

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 1.8e-05
   TIGR03844  98 csfkelealptlqrlkekg....kkvlvvasaGntgrafaevsaltgkpvvlvv..PesavdrlwttedassvllvtvegdytdaiklaekiaalpGl 189
                 +s k+  al+ +q ++e+g    ++++v a++Gntg a a v+a+ g+  v+ +  P s   r  + +  ++v++    g  t  ++ ae+++++ G 
  MMETSP1137-20121227|5391_1 100 ASVKDRLALAIIQDAEERGvlkpGDTVVEATSGNTGIAVAMVCAQRGYKCVITMaePFSVERRRLMRMLGAKVIVTPKAGKGTGMVRKAEELCEKHGW 197
                 68888889999999999853333689999******************998887633556666666667888888888889999999999999999886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (490 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       132  (0.0321794); expected 82.0 (0.02)
Passed bias filter:                      123  (0.0299854); expected 82.0 (0.02)
Passed Vit filter:                        23  (0.00560702); expected 4.1 (0.001)
Passed Fwd filter:                        15  (0.00365675); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.51u 0.16s 00:00:00.67 Elapsed: 00:00:00.84
# Mc/sec: 769.94
//
Query:       MMETSP1137-20121227|5392_1  [L=379]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   6.8e-104  345.3   0.0   8.3e-104  345.0   0.0    1.0  1  TIGR01464 hemE: uroporphyrinogen decarboxylase
    5.4e-21   73.0   0.0    6.6e-21   72.7   0.0    1.0  1  TIGR01463 mtaA_cmuA: methyltransferase, MtaA/CmuA family


Domain annotation for each model (and alignments):
>> TIGR01464  hemE: uroporphyrinogen decarboxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  345.0   0.0    4e-107  8.3e-104      19     337 ..      57     374 ..      54     375 .. 0.98

  Alignments for each domain:
  == domain 1    score: 345.0 bits;  conditional E-value: 4e-107
   TIGR01464  19 mRQaGRylpeYrelrekagdflelckdpdlavevtlqPlrrlgvDAaIlFsDIlvilealglelefeegkgpvleepireaedvkklke.vdvekeleyvleaikllreeleeevpliGFaGaPfTlasYlieGggskdlakakkflyeepealkaLlekltdatieYlseQvkaGadavqiFdswagaLseedfeefvlpylkkiieelkkr.ekvPvilfakgagelleelaetgadvvglDwsvdlkeaaklvkkkvalQGnldPavllaskealeekvekilealkegksryifNlGHGilpetppenvkalvelvh 337
                 mRQaGRy++e+re  +k++ f++ +++pd+a+e++lqP+r++gvD++I+FsDIl++l+alg+e+++++g+gp++++p+r+++dv+++++ +d+e++l+++  ++  lr+e e++ +l+GF+G+PfTl++Y +eG++++++ ++kk+++++pe+l+a l +l+da+ +Y  +Q+++Ga+++q F+swa +L +++f++f++py+ + ++ +++r ++vPv+++a+g +++l+  +++ +dvv+lDw vd++ a+++++k+  +QGn+dP+vl+ s e ++++v++++++++   +++i+NlGHG+l  tp+ +v+a+v++++
  MMETSP1137-20121227|5392_1  57 MRQAGRYMAEFREFSDKYP-FRQRSETPDIAIELSLQPWRAFGVDGVIMFSDILTPLPALGIEFDVVKGTGPIISSPLRSMADVTAMTPmDDPESKLPFIRTILGDLRAETEGRNTLLGFVGSPFTLVAYAVEGQANRHCINTKKMMMRNPEVLHAALGRLADAIGQYACYQIESGAQVIQFFESWAHHLGPSQFATFAKPYADRAMAYVRARhPEVPVVYYANGGSSYLNLQSDMECDVVSLDWAVDMAYARDILGKERLVQGNIDPTVLFGSDEQIRQSVHACIKKAGG--KGHILNLGHGVLQGTPESAVQAFVNAAK 374
                 ******************9.********************************************************************9889*************************************************************************************************************************55************************************************************************8875..6***********************9876 PP

>> TIGR01463  mtaA_cmuA: methyltransferase, MtaA/CmuA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.7   0.0   3.2e-24   6.6e-21      51     339 ..      85     377 ..      76     378 .. 0.85

  Alignments for each domain:
  == domain 1    score: 72.7 bits;  conditional E-value: 3.2e-24
   TIGR01463  51 amAklaiaayevvGleavrlpfdltveaEvlgCeldagkkkrPsvvksPapknladlevkenlllkegripvvleaikilrekygdelpiigslegPitlAsqligvee......flkylstdpdlakavlelaadiviayaklmveaGadviailDPvaSsdllspetykefvlpyqkklvaeikeid.svtvlHiCgktskilsdiaksGveglsvdekvgvaeakkvigdeislvGnldpvsvllnGtaekvkklakevlea.G..vdivapgCdiasmtpleNlkalveackeik 339
                    +l  ++++ +G++ v++  d+ ++  +lg e d+ k   P  + sP  +  ad++    +   e++ p +      lr+  ++   + g +++P+tl    + +++        k ++ +p++++a+l   ad+   ya  ++e Ga+vi+  +  a    l+p  +  f+ py  + +a+++     v v+      s  l+   +  ++ +s d  v++a+a+ ++g+e ++ Gn+dp  ++  G  e++++  + ++++ G  + i+  g ++  +tp+  ++a+v+a+kei+
  MMETSP1137-20121227|5392_1  85 IAIELSLQPWRAFGVDGVIMFSDILTPLPALGIEFDVVKGTGPI-ISSPL-RSMADVTAMTPMDDPESKLPFIRTILGDLRAETEGRNTLLGFVGSPFTLVAYAVEGQAnrhcinTKKMMMRNPEVLHAALGRLADAIGQYACYQIESGAQVIQFFESWAH--HLGPSQFATFAKPYADRAMAYVRARHpEVPVVYYANGGSSYLNLQSDMECDVVSLDWAVDMAYARDILGKERLVQGNIDPTVLF--GSDEQIRQSVHACIKKaGgkGHILNLGHGVLQGTPESAVQAFVNAAKEIP 377
                 5567889999***************************9998885.55585.6788888888888899****999999**********************9877777665111111345567789********************************99886..59*******************9754314556666666788899999999*******************************7665..9999999999999875242347*************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (379 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        79  (0.0192589); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.29u 0.15s 00:00:00.43 Elapsed: 00:00:00.46
# Mc/sec: 1087.48
//
Query:       MMETSP1137-20121227|5394_1  [L=438]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (438 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        70  (0.0170648); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.15s 00:00:00.43 Elapsed: 00:00:00.65
# Mc/sec: 889.40
//
Query:       MMETSP1137-20121227|5395_1  [L=295]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      0.002   15.2   8.4     0.0044   14.1   0.7    2.6  3  TIGR00599 rad18: DNA repair protein rad18


Domain annotation for each model (and alignments):
>> TIGR00599  rad18: DNA repair protein rad18
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.7   1.1e-06    0.0044      25      60 ..      60      98 ..      40     107 .. 0.88
   2 ?   -2.6   0.1      0.13   5.4e+02     178     189 ..     116     127 ..      99     131 .. 0.63
   3 !    5.8   0.1   0.00037       1.5     152     221 ..     167     240 ..     154     270 .. 0.75

  Alignments for each domain:
  == domain 1    score: 14.1 bits;  conditional E-value: 1.1e-06
   TIGR00599 25 tslRChvCkdffkaPvltsCs...HtFCslCiRrcLsee 60
                 +  C +C +  k Pv  +C    HtFC+ C+  +Ls +
  MMETSP1137-20121227|5395_1 60 DTWSCPICMEIAKDPVQMPCRpqpHTFCAGCLAAHLSIK 98
                5678****************6666************976 PP

  == domain 2    score: -2.6 bits;  conditional E-value: 0.13
   TIGR00599 178 dedlvqCPiCsq 189
                  +  v CP+C q
  MMETSP1137-20121227|5395_1 116 TQCTVGCPLCRQ 127
                 455677777776 PP

  == domain 3    score: 5.8 bits;  conditional E-value: 0.00037
   TIGR00599 152 kktadilqlssdtskrndkdyrse.....kpdedlvqCPiC.sqlvkekaverhldseClgspsagasktkPiesk 221
                  k a++l  s+d + ++ k+   +      p+    +CP C ++ +++  + +h +   l  +++g     Pi + 
  MMETSP1137-20121227|5395_1 167 DKCATVLGTSQDVAAAAAKRLSRQppaepTPNRATFSCPFCpQTHLPRADLLQHVQA--LHHNQLGRPAVCPICAS 240
                 456779999999998888888878777766788999*****5567899999999887..66666765555555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (295 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        66  (0.0160897); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.24u 0.14s 00:00:00.38 Elapsed: 00:00:00.39
# Mc/sec: 998.38
//
Query:       MMETSP1137-20121227|5396_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        63  (0.0153584); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.11s 00:00:00.25 Elapsed: 00:00:00.33
# Mc/sec: 207.98
//
Query:       MMETSP1137-20121227|5397_1  [L=147]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (147 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        35  (0.00853242); expected 82.0 (0.02)
Passed bias filter:                       35  (0.00853242); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.11s 00:00:00.27 Elapsed: 00:00:00.35
# Mc/sec: 554.35
//
Query:       MMETSP1137-20121227|5399_1  [L=50]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (50 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        55  (0.0134081); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:00.52
# Mc/sec: 126.91
//
Query:       MMETSP1137-20121227|5400_1  [L=286]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (286 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       236  (0.0575329); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.18s 00:00:00.53 Elapsed: 00:00:01.25
# Mc/sec: 301.99
//
Query:       MMETSP1137-20121227|5401_1  [L=437]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.2e-09   31.5   0.0    1.2e-08   31.1   0.0    1.1  1  TIGR03903 TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
    0.00027   18.3   0.0    0.00045   17.6   0.0    1.4  1  TIGR03724 arch_bud32: Kae1-associated kinase Bud32


Domain annotation for each model (and alignments):
>> TIGR03903  TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.1   0.0   5.9e-12   1.2e-08       1     194 [.     103     288 ..     103     299 .. 0.79

  Alignments for each domain:
  == domain 1    score: 31.1 bits;  conditional E-value: 5.9e-12
   TIGR03903   1 etghkvaikllRedaaeeerlvaRFr.ReialCarLshPnivaLlD....sGeae.dgllFavFeyveGrt..lrevLaadGaLpaaetgrLml.qvLDalaaahdaGvvhRDLkPqnimvsaadveshakvLDFGigaLlpgvedadeatltrttevlGsPaYaaPeqLRgep.vtaksDlYaWGLivleCLtGkrvvqGasv 194
                 +tg++vaik + +d        +RF+ Re+++ + L h n+  L      +G+ + + +l  v ++v+     +    a    + +    +L + q   +la  h+ Gv hRD+kPqn++v    +++  k+ DFG + +l   e         +  ++ s  Y aPe + g +  t   D+++ G ++ e L G +   G+s 
  MMETSP1137-20121227|5401_1 103 QTGKEVAIKKVLND--------KRFKnRELQIMKMLDHTNVTTLYHfyttEGDKPeETYLNLVMDFVPQTVygMSRQFAKSKKIFPLLLLKLYTyQLCRSLAYIHSLGVCHRDIKPQNLLVHP--ETHVLKLCDFGSAKILVKGEP--------NVSYICSRYYRAPELIFGATdYTCCIDVWSAGCVLAELLLGVPLFPGESG 288
                 68889999888888........788659***************9753333676551557889*****97542255667777777777777776539999********************9965..57789******9998876665........56789999999999998865279999999999999999999999999884 PP

>> TIGR03724  arch_bud32: Kae1-associated kinase Bud32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.0   2.2e-07   0.00045      37     137 ..     112     231 ..      85     239 .. 0.63

  Alignments for each domain:
  == domain 1    score: 17.6 bits;  conditional E-value: 2.2e-07
   TIGR03724  37 eklrkeRtr.kEarllseakkagvntPvvydvdpeek......kivmeyiegkk..lkdlleekel........ellkevGelvgklHkagivhgDlttsNiivk..ddklyliDfGLgk 137
                 + l+ +R + +E ++++ + ++ v+t + +  ++ +k      ++vm+ + ++   ++  + ++++         +++++ + ++ +H+ g++h D+ ++N++v+  ++ l l DfG +k
  MMETSP1137-20121227|5401_1 112 KVLNDKRFKnRELQIMKMLDHTNVTTLYHFYTTEGDKpeetylNLVMDFVPQTVygMSRQFAKSKKifpllllkLYTYQLCRSLAYIHSLGVCHRDIKPQNLLVHpeTHVLKLCDFGSAK 231
                 556666654246666666666666655544433221111112256666666654223333333333467777756788999***********************7324445689999776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (437 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        78  (0.0190151); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.37u 0.16s 00:00:00.53 Elapsed: 00:00:00.71
# Mc/sec: 812.38
//
Query:       MMETSP1137-20121227|5402_1  [L=449]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (449 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        62  (0.0151146); expected 82.0 (0.02)
Passed bias filter:                       37  (0.00901999); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.13s 00:00:00.43 Elapsed: 00:00:00.42
# Mc/sec: 1411.03
//
Query:       MMETSP1137-20121227|5403_1  [L=172]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (172 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        52  (0.0126767); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.11s 00:00:00.28 Elapsed: 00:00:00.46
# Mc/sec: 493.52
//
Query:       MMETSP1137-20121227|5404_1  [L=99]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (99 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        42  (0.0102389); expected 82.0 (0.02)
Passed bias filter:                       38  (0.00926377); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.12s 00:00:00.26 Elapsed: 00:00:00.26
# Mc/sec: 502.57
//
Query:       MMETSP1137-20121227|5405_1  [L=288]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.1e-17   61.0   4.0    1.5e-13   48.2   0.0    2.4  3  TIGR01759 MalateDH-SF1: malate dehydrogenase
    1.8e-16   58.3   3.1    2.5e-10   38.1   0.0    2.2  2  TIGR01758 MDH_euk_cyt: malate dehydrogenase, NAD-dependent
    3.6e-14   50.4   2.0    6.4e-10   36.5   0.0    2.1  2  TIGR01756 LDH_protist: lactate dehydrogenase


Domain annotation for each model (and alignments):
>> TIGR01759  MalateDH-SF1: malate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.0      0.56   7.7e+02      67      87 ..      80     100 ..      77     102 .. 0.74
   2 !   13.9   0.3   3.2e-06    0.0043     128     187 ..     119     177 ..     107     191 .. 0.83
   3 !   48.2   0.0   1.1e-16   1.5e-13     235     324 ..     199     286 ..     191     288 .] 0.91

  Alignments for each domain:
  == domain 1    score: -3.4 bits;  conditional E-value: 0.56
   TIGR01759  67 vvattdpeeafkdvdvallvg 87 
                 v+a++++++a++++d+a+ +g
  MMETSP1137-20121227|5405_1  80 VTAADSAAVALTGADYAIXLG 100
                 667777888888888888776 PP

  == domain 2    score: 13.9 bits;  conditional E-value: 3.2e-06
   TIGR01759 128 vgnPantnaliaskaapkikkknfsaltrLDhnRalsqlaeklgvkvskvknvviwGnHs 187
                 v+   n  al ++ka+  + +k+++a++   +    s++a+  ++  s+vknv++wGn +
  MMETSP1137-20121227|5405_1 119 VACSSNSSALKVMKAS-GLGEKQITAIMCHKEMLGASAIAAAKNADASAVKNVIVWGNGA 177
                 4556677777776655.99*********99999999**********************65 PP

  == domain 3    score: 48.2 bits;  conditional E-value: 1.1e-16
   TIGR01759 235 eargassaasaakaaidhvrdwvlgtaegefvsmavlsdgnpYgipeg.ivfsfPvtvkkdgeyeiveglelddfvrekldltakelleEk 324
                  + g++sa   a aa+ h+++w++gt +g+++sm+vl    +Ygi +g i++s+Pv ++ +ge+  v g++l++ v++ +++    ll+E 
  MMETSP1137-20121227|5405_1 199 PKVGEASAEVXAAAALRHMQSWAFGT-DGDWISMGVLGST-DYGIGRGkIFYSVPVVCD-KGEFFRVGGVHLTAEVAKVMEADRVALLKEA 286
                 567999********************.9*********977.7***9876899******9.9*********************999999997 PP

>> TIGR01758  MDH_euk_cyt: malate dehydrogenase, NAD-dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   0.5   4.2e-08   5.7e-05     122     183 ..     117     177 ..     105     192 .. 0.83
   2 !   38.1   0.0   1.9e-13   2.5e-10     235     315 ..     203     282 ..     190     288 .] 0.86

  Alignments for each domain:
  == domain 1    score: 20.5 bits;  conditional E-value: 4.2e-08
   TIGR01758 122 lvvgnPantnalvlseyapsipkknvsaltrldhnralaqvaeklgvpvsdvknviiwGnhs 183
                 ++v+  +n+ al + + a+++ +k ++a+    +    + +a+  ++  s+vknvi+wGn +
  MMETSP1137-20121227|5405_1 117 VLVACSSNSSALKVMK-ASGLGEKQITAIMCHKEMLGASAIAAAKNADASAVKNVIVWGNGA 177
                 4577888999998776.5689********999999999**********************75 PP

  == domain 2    score: 38.1 bits;  conditional E-value: 1.9e-13
   TIGR01758 235 lssalsaakaavdqvrdwvlGtkeGefvsmavysdGskydvPkd.lifsfPvtikngewkiveglslddasrkkldltakel 315
                  +sa   a aa  +++ w +Gt +G+++sm+v    + y++ ++ +++s Pv + +ge+  v g+ l+  ++k +++    l
  MMETSP1137-20121227|5405_1 203 EASAEVXAAAALRHMQSWAFGT-DGDWISMGVLGSTD-YGIGRGkIFYSVPVVCDKGEFFRVGGVHLTAEVAKVMEADRVAL 282
                 5678888999***********9.6***********99.**99864789***********************99998765555 PP

>> TIGR01756  LDH_protist: lactate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.4   4.9e-06    0.0067     111     169 ..     121     178 ..     103     192 .. 0.82
   2 !   36.5   0.0   4.7e-13   6.4e-10     216     298 ..     200     279 ..     192     287 .. 0.80

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 4.9e-06
   TIGR01756 111 npvntnalvamlhakklseenfssllmldqnravseiasklkvevdeirdvvvwGnhae 169
                    n+ a + +++a++l e++ ++++   +    s ia+  + + + +++v+vwGn a 
  MMETSP1137-20121227|5405_1 121 CSSNSSA-LKVMKASGLGEKQITAIMCHKEMLGASAIAAAKNADASAVKNVIVWGNGAV 178
                 4455555.45679************9999999************************875 PP

  == domain 2    score: 36.5 bits;  conditional E-value: 4.7e-13
   TIGR01756 216 rrGftsaasavkaslqhmkawlfGtkegevlslGipvpednpyGikpGvvf.sfpctvdkdGkvhvvedlelndelkeklkqte 298
                 + G +sa   + a+l hm++w fGt +g+++s+G+    ++ yGi  G +f s p    ++G+   v +++l  e+++ ++   
  MMETSP1137-20121227|5405_1 200 KVGEASAEVXAAAALRHMQSWAFGT-DGDWISMGV--LGSTDYGIGRGKIFySVPVV-CDKGEFFRVGGVHLTAEVAKVMEADR 279
                 67999*******************9.69******6..67899***999776267765.55799999999999998887666554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (288 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       135  (0.0329108); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.29u 0.11s 00:00:00.40 Elapsed: 00:00:00.49
# Mc/sec: 775.77
//
Query:       MMETSP1137-20121227|5406_1  [L=505]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (505 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       134  (0.032667); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.15s 00:00:00.47 Elapsed: 00:00:00.61
# Mc/sec: 1092.70
//
Query:       MMETSP1137-20121227|5408_1  [L=585]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (585 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       164  (0.0399805); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.14s 00:00:00.52 Elapsed: 00:00:00.64
# Mc/sec: 1206.46
//
Query:       MMETSP1137-20121227|5409_1  [L=1053]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.2e-24   85.1   0.9    8.3e-13   46.2   0.0    2.8  3  TIGR03896 cyc_nuc_ocin: bacteriocin-type transport-associated protein
    6.3e-13   45.3   0.0    8.4e-13   44.9   0.0    1.1  1  TIGR03903 TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
      1e-06   26.2   0.0    2.6e-06   24.9   0.0    1.6  1  TIGR03724 arch_bud32: Kae1-associated kinase Bud32
     0.0037   13.7   0.0     0.0065   12.9   0.0    1.3  1  TIGR01982 UbiB: 2-polyprenylphenol 6-hydroxylase
     0.0056   14.3   0.1      0.023   12.3   0.1    2.0  2  TIGR03697 NtcA_cyano: global nitrogen regulator NtcA


Domain annotation for each model (and alignments):
>> TIGR03896  cyc_nuc_ocin: bacteriocin-type transport-associated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.9   0.2   1.4e-12   1.1e-09       7     123 ..      78     190 ..      74     210 .. 0.75
   2 !   46.2   0.0     1e-15   8.3e-13     148     269 ..     382     504 ..     378     521 .. 0.90
   3 ?   -1.4   0.0       0.3   2.4e+02     162     211 ..     577     631 ..     569     644 .. 0.78

  Alignments for each domain:
  == domain 1    score: 35.9 bits;  conditional E-value: 1.4e-12
   TIGR03896   7 vsesreiaaettLieeGkaaddLfilldGaitvtikqeeddaltravelaeLsrGelvGemslleerppvatikaveksrllsipveeLaaklqsdvalaaslYrviaeklalqiqn 123
                  +++r ++a+ +Lie+G+ +++++ +++G i    + e++      vela+  +G+++Ge s+l    +  +  av    +++++ ++L  +l++++  a +l++v+a+  +++i++
  MMETSP1137-20121227|5409_1  78 TGTVRHLTAGEKLIEQGVESEKMYFIKEGHIDLVLRGEDGVN----VELARRGPGQVLGELSMLLGHKTTNAALAVGTVTVIEVQHSKLLMMLEEQTLKAGQLFKVVATYTSERISE 190
                 567788888888888888888888888888887776655544....48888888888888887766666666678888888888888888888888888888888888888888876 PP

  == domain 2    score: 46.2 bits;  conditional E-value: 1e-15
   TIGR03896 148 eleekDvaWlaksGkkkklsagtvlikegeavdaLYilLaGeaelsisedgasre..vgssrrGeilGelsflnsdlaatatvkavealvlLaidkeelaakLqaDvalaerfYrsiaslLsqr 269
                 el+e+D   +    +++    g+ +++eg+a  +L+ ++ G  ++ ++  g ++   vg  r Ge+lGe+s+l    a ta+v a e++v+L i+ + l + + + ++l +rf+  +as  ++r
  MMETSP1137-20121227|5409_1 382 ELKEEDWGHFLSVATQRTYKQGDYVLQEGQATATLFQVVRGSLRVELQLAGQAQAvvVGYRRAGEMLGETSLLKEGRA-TASVAADEDTVVLCIEGRALEQLFSTHPGLPSRFFCFLASYQADR 504
                 78888988899999999999************************9999999777622688999**********98877.*************************************99987776 PP

  == domain 3    score: -1.4 bits;  conditional E-value: 0.3
   TIGR03896 162 kkkklsagtvlikegeavdaLYilLaGeaelsisedg.....asrevgssrrGei 211
                 + k+l+ +++l+ e e++ + Yi     + l   +++      + +v ++++ e+
  MMETSP1137-20121227|5409_1 577 DYKDLPEQQMLVAEAESLSKKYITGRSSMCLLTFVEEsvvkdIQDSVEKLSKNEL 631
                 56899999***************98888888777777444444456666666665 PP

>> TIGR03903  TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.9   0.0     1e-15   8.4e-13       6     183 ..     710     883 ..     705     900 .. 0.85

  Alignments for each domain:
  == domain 1    score: 44.9 bits;  conditional E-value: 1e-15
   TIGR03903   6 vaikllRedaa...eeerlvaRFrReialCarLshPnivaLlDsGeaedgllFavFeyveGrtlrevLaadGaLpaaetgrLmlqvLDalaaahdaGvvhRDLkPqnimvsaadveshakvLDFGigaLlpgvedadeatltrttevlGsPaYaaPe....qLRgepvtaksDlYaWGLivleCL 183
                  a+k++ ++ +        +++   e ++   L+hP +v+L    +  + +l  v + v+   l e + ++  L++++    ++ v++ ++  h++G+++RDLkP+n+++   d+e h +++D G++a  ++ +        + +  +G+  Y aPe      R  p    +D Y+ G+++ e  
  MMETSP1137-20121227|5409_1 710 YAMKVMQKEMMkqnLGSSWRKKIASEQQIMSVLQHPFLVNLKYAFQNSE-FLILVMDIVPYGDLSEFVLTKRRLTPEQVRWAVMEVVEVMSYIHAQGILYRDLKPENLLI---DDEGHVRLVDMGLAARITEKQP-------QRSSRVGTDCYMAPEvrwaRRRRQPYGKSADWYTVGVLLYEFT 883
                 578888887663333345688889999*************987777666.***********************************************************9...778899*******998766655.......445569********955544689999999*******9998865 PP

>> TIGR03724  arch_bud32: Kae1-associated kinase Bud32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.9   0.0   3.2e-09   2.6e-06      44     139 ..     732     835 ..     700     852 .. 0.73

  Alignments for each domain:
  == domain 1    score: 24.9 bits;  conditional E-value: 3.2e-09
   TIGR03724  44 trkEarllseakkagvntPvvydvdpeek.kivmeyiegkklkdlleekel.......ellkevGelvgklHkagivhgDlttsNiiv.kddklyliDfGLgkks 139
                   +E +++s +++    + + y ++++e+ ++vm+ +   +l++ + +k+         ++ ev e+++ +H +gi++ Dl ++N+++ +++++ l+D+GL+ + 
  MMETSP1137-20121227|5409_1 732 IASEQQIMSVLQHP-FLVNLKYAFQNSEFlILVMDIVPYGDLSEFVLTKRRltpeqvrWAVMEVVEVMSYIHAQGILYRDLKPENLLIdDEGHVRLVDMGLAARI 835
                 56666666655543.455566666666651568999999999998877666788888889999*************************4467899******9864 PP

>> TIGR01982  UbiB: 2-polyprenylphenol 6-hydroxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.9   0.0   7.9e-06    0.0065     263     310 ..     792     839 ..     761     845 .. 0.86

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 7.9e-06
   TIGR01982 263 nlvesflkqvlrdgfFHaDlHpGNilvakdgkiialDfGivgrlseee 310
                   v  ++  + ++g+   Dl p N+l++ +g++ ++D+G+ +r++e++
  MMETSP1137-20121227|5409_1 792 MEVVEVMSYIHAQGILYRDLKPENLLIDDEGHVRLVDMGLAARITEKQ 839
                 4566778889999*******************************9986 PP

>> TIGR03697  NtcA_cyano: global nitrogen regulator NtcA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.3   0.1   2.8e-05     0.023       8      89 ..      94     173 ..      87     191 .. 0.83
   2 ?   -2.6   0.0         1   8.2e+02     160     190 ..     686     716 ..     683     718 .. 0.89

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 2.8e-05
   TIGR03697   8 gdpaekvyllkkgavklsrvyeageeitvallrensvfgvlslitgkrsdrfyhavaftrvellavpieqvekaleedadls 89 
                 g  +ek+y++k g + l    e g ++ +a      v+g ls++ g+++     a+a  +v ++ v   ++  +lee++  +
  MMETSP1137-20121227|5409_1  94 GVESEKMYFIKEGHIDLVLRGEDGVNVELARRGPGQVLGELSMLLGHKTTN--AALAVGTVTVIEVQHSKLLMMLEEQTLKA 173
                 67789*************999*9999999999999************9976..67888889999998888888888776544 PP

  == domain 2    score: -2.6 bits;  conditional E-value: 1
   TIGR03697 160 itrllgelrkkklisidkkkitvhdplklak 190
                 + r+lge    ++i++ k+   vh  +k+ +
  MMETSP1137-20121227|5409_1 686 VIRVLGEGGFGQVIDVVKRDCGVHYAMKVMQ 716
                 78999999999*************9999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1053 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       166  (0.0404681); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.68u 0.15s 00:00:00.83 Elapsed: 00:00:00.67
# Mc/sec: 2074.40
//
Query:       MMETSP1137-20121227|5410_1  [L=296]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (296 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        95  (0.0231594); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.16s 00:00:00.42 Elapsed: 00:00:00.46
# Mc/sec: 849.32
//
Query:       MMETSP1137-20121227|5411_1  [L=444]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (444 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       112  (0.0273038); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.14s 00:00:00.43 Elapsed: 00:00:00.32
# Mc/sec: 1831.35
//
Query:       MMETSP1137-20121227|5412_1  [L=207]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (207 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       133  (0.0324232); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.11s 00:00:00.31 Elapsed: 00:00:00.32
# Mc/sec: 853.80
//
Query:       MMETSP1137-20121227|5413_1  [L=317]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (317 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       144  (0.0351048); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.13s 00:00:00.38 Elapsed: 00:00:00.34
# Mc/sec: 1230.60
//
Query:       MMETSP1137-20121227|5414_1  [L=291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0013   15.8   7.6      0.002   15.3   5.3    1.2  1  TIGR00599 rad18: DNA repair protein rad18
     0.0031   14.3   0.0      0.027   11.1   0.0    1.9  2  TIGR00054 TIGR00054: RIP metalloprotease RseP


Domain annotation for each model (and alignments):
>> TIGR00599  rad18: DNA repair protein rad18
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   5.3   9.7e-07     0.002      25      71 ..     226     274 ..     217     277 .. 0.85

  Alignments for each domain:
  == domain 1    score: 15.3 bits;  conditional E-value: 9.7e-07
   TIGR00599  25 tslRChvCkdffkaPvl..tsCsHtFCslCiRrcLseepkCPlCraedq 71 
                 + l C vC    k+P      C+H FC  C+ +c +    CPlCra  +
  MMETSP1137-20121227|5414_1 226 SCLDCAVCLGVPKKPTEwpAMCGHHFCYDCVTKCQQRSKACPLCRAMPR 274
                 678999999999999752266************************9765 PP

>> TIGR00054  TIGR00054: RIP metalloprotease RseP
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.1   0.0   1.3e-05     0.027     201     258 ..      47     103 ..      34     134 .. 0.88
   2 ?    0.8   0.0     0.018        37     130     180 ..     152     201 ..     136     219 .. 0.77

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 1.3e-05
   TIGR00054 201 kielvlsdvvdnspaekaGlkeGDkilkidgeklkswrdlvklvkenpeksleikveR 258
                 ++++v+s++ + s a+   l   D i  i++++ +s r  v +++e +  s++i+++R
  MMETSP1137-20121227|5414_1  47 RNDAVISTIAPSSIASASPLAVFDTITHINDVPTTSARHAVLMIRE-SVGSVKIQLRR 103
                 689*******************************************.66778888877 PP

  == domain 2    score: 0.8 bits;  conditional E-value: 0.018
   TIGR00054 130 vieeldknsialeakiedgdeilsvdgkkikdfkdvrkqlaekagevsvei 180
                  ++e+++ s  l  ++e g +i ++dg      +++ ++l+e  ge+++ +
  MMETSP1137-20121227|5414_1 152 IVSEVSSSS-PLAGHLEVGSQIMAIDGSCFDCPEQASQLLVERFGELVLLV 201
                 455666655.77888999999999999888888888888888888888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (291 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        91  (0.0221843); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.25u 0.16s 00:00:00.41 Elapsed: 00:00:00.28
# Mc/sec: 1371.74
//
Query:       MMETSP1137-20121227|5415_1  [L=310]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (310 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       110  (0.0268162); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.16s 00:00:00.41 Elapsed: 00:00:00.34
# Mc/sec: 1203.43
//
Query:       MMETSP1137-20121227|5416_1  [L=604]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (604 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        75  (0.0182838); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.16s 00:00:00.54 Elapsed: 00:00:00.54
# Mc/sec: 1476.32
//
Query:       MMETSP1137-20121227|5417_1  [L=640]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (640 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       194  (0.047294); expected 82.0 (0.02)
Passed bias filter:                      105  (0.0255973); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.16s 00:00:00.60 Elapsed: 00:00:00.51
# Mc/sec: 1656.33
//
Query:       MMETSP1137-20121227|5418_1  [L=187]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (187 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        89  (0.0216967); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.15s 00:00:00.32 Elapsed: 00:00:00.33
# Mc/sec: 747.94
//
Query:       MMETSP1137-20121227|5419_1  [L=261]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (261 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        93  (0.0226719); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.13s 00:00:00.37 Elapsed: 00:00:00.32
# Mc/sec: 1076.54
//
Query:       MMETSP1137-20121227|5420_1  [L=617]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (617 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       138  (0.0336421); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.16s 00:00:00.57 Elapsed: 00:00:00.51
# Mc/sec: 1596.81
//
Query:       MMETSP1137-20121227|5421_1  [L=429]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (429 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        49  (0.0119454); expected 82.0 (0.02)
Passed bias filter:                       44  (0.0107265); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.12s 00:00:00.42 Elapsed: 00:00:00.41
# Mc/sec: 1381.06
//
Query:       MMETSP1137-20121227|5422_1  [L=333]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-08   32.1   0.0    1.8e-08   31.8   0.0    1.1  1  TIGR01505 tartro_sem_red: 2-hydroxy-3-oxopropionate reductase
    8.2e-07   26.5   0.7    1.2e-06   25.9   0.5    1.1  1  TIGR01692 HIBADH: 3-hydroxyisobutyrate dehydrogenase


Domain annotation for each model (and alignments):
>> TIGR01505  tartro_sem_red: 2-hydroxy-3-oxopropionate reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.8   0.0     9e-12   1.8e-08      12     224 ..      49     260 ..      36     290 .. 0.81

  Alignments for each domain:
  == domain 1    score: 31.8 bits;  conditional E-value: 9e-12
   TIGR01505  12 kPmsknllkaGyqlvvatleqealdellaaGaesaetakevvedadvivtmvPdsPqveevalGenGileaakkGkvlvdmssiaPleskelakavkekGidvldaPvsGG.eagaiegtlsimvGGdkavfdkv..kpllealg..ksivlvGenGaGqtvkvanqvivalnieavsealvlaekaGvdpkavlqalrGGlagstvleakkerlldr 224
                   +++ ll     +++ t  +++ ++l   Ga  a + + +  ++d ++ ++ +  +v e +      l+   + +++v ms+++P  s +l  a +++G  ++   ++G  e  ai++ l+ +   d+    ++   +l  a++   +iv   +  a  t k+    +v   +e ++ea +l +++G d ++v   l   +a  t l   +e + dr
  MMETSP1137-20121227|5422_1  49 FSVAQKLLVQNGAITALTSSPQQDERLSVSGALIAPSLEFLYASCDTVLLVLNSEAEVSEAV----SALKRGSRTSLIVAMSAVSPTLSTKLWAACEARGCSFVCCLIAGCdEHAAIQADLAWIS-SDRVEVARAvrAQLCPAFCsrAEIVSSRDVSAAPTLKLISDFVVFGSLELIAEAATLSQQSGQDRETVSSLL-DAIAPNTYLSSLGEFVRDR 260
                 556666666666789999999999999999**********************9999999876....4577788889*********************************9736788999998654.444444443113455555411469999999***********************************9998765.5688888888777777766 PP

>> TIGR01692  HIBADH: 3-hydroxyisobutyrate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.9   0.5   5.8e-10   1.2e-06       8     202 ..      48     242 ..      41     252 .. 0.90

  Alignments for each domain:
  == domain 1    score: 25.9 bits;  conditional E-value: 5.8e-10
   TIGR01692   8 GgpmaanllkaghavrvfdlsakaveelveaGaqaaasaaeaveeadvvitmlPagkhvesvyagdegilakvkkksllidsstidvdsarkvaeeaaakGavfldaPvsGGv.ggaraGtltfmvGgeaeefaraepvlea...mgknivhaGdaGaGqaakiCnnlllgismiGvaealalgeklGldpkvlaeils 202
                 G ++a+ ll ++ a+++   s+++ e+l  +Ga +a+s     +  d+v+ +l + ++v +  +     l++ ++ sl++  s++ +  + k+ ++ +a+G  f+   ++G    +a    l+ +     e  +++++ l +      +iv + d+ a  + k+  ++++  s+  +aea +l++++G d ++++ +l+
  MMETSP1137-20121227|5422_1  48 GFSVAQKLLVQNGAITALTSSPQQDERLSVSGALIAPSLEFLYASCDTVLLVLNSEAEVSEAVS----ALKRGSRTSLIVAMSAVSPTLSTKLWAACEARGCSFVCCLIAGCDeHAAIQADLAWISSDRVEVARAVRAQLCPafcSRAEIVSSRDVSAAPTLKLISDFVVFGSLELIAEAATLSQQSGQDRETVSSLLD 242
                 67789999999999999999*************************************9999885....799****************************************8615677899******999999999999975221456899****************99999******************999988776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (333 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       137  (0.0333983); expected 82.0 (0.02)
Passed bias filter:                      100  (0.0243784); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.29u 0.16s 00:00:00.44 Elapsed: 00:00:00.64
# Mc/sec: 686.76
//
Query:       MMETSP1137-20121227|5423_1  [L=297]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.8e-52  174.8   0.0    5.3e-52  173.9   0.0    1.4  1  TIGR00624 tag: DNA-3-methyladenine glycosylase I


Domain annotation for each model (and alignments):
>> TIGR00624  tag: DNA-3-methyladenine glycosylase I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  173.9   0.0   1.3e-55   5.3e-52      11     173 ..     101     282 ..      93     286 .. 0.91

  Alignments for each domain:
  == domain 1    score: 173.9 bits;  conditional E-value: 1.3e-55
   TIGR00624  11 lyrayhdnewgtplrdakalfellsleafqaglswlivlrkrenyrrafsqfdiekvarytdadverlll.......ddgivrnrakieatianaraalelesed............lvellwsfvndkpqvrqrkadseipsvsseskalskelkkrgfrfvgptiayalmqatglvddhi 173
                  y+ay  +ewg+  r  + lfe+l+le+ qaglsw ++l kre yrraf++fdi   a++tdad+erll+       +d ivr+r+ki ++  nar +l+l +e             + e+lws+v+  p++++  + s++ps  ++s  ++k+lkkrgf+fvg+ i+y+lmq++glv dh 
  MMETSP1137-20121227|5423_1 101 EYKAYMRDEWGREKRGDQPLFEKLCLEGAQAGLSWATILAKREAYRRAFYNFDIAACAAMTDADIERLLQpvadalkEDTIVRHRGKITSVQHNARCVLALIKEReeagvprpqhghFDEYLWSYVGGSPKLNRWASFSQMPSEDAASIEMAKALKKRGFKFVGAKICYSLMQSCGLVIDHP 282
                 599*****************************************************************854443333678******************999554333556777777899**************************************************************5 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (297 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       108  (0.0263286); expected 82.0 (0.02)
Passed bias filter:                      102  (0.0248659); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.24u 0.13s 00:00:00.37 Elapsed: 00:00:00.39
# Mc/sec: 1005.15
//
Query:       MMETSP1137-20121227|5424_1  [L=249]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (249 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       126  (0.0307167); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.13s 00:00:00.35 Elapsed: 00:00:00.35
# Mc/sec: 939.01
//
Query:       MMETSP1137-20121227|5425_1  [L=583]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   4.4e-171  566.9   0.0   5.4e-171  566.6   0.0    1.0  1  TIGR01885 Orn_aminotrans: ornithine--oxo-acid transaminase
     5e-102  339.4   0.0   7.3e-102  338.8   0.0    1.2  1  TIGR00707 argD: acetylornithine and succinylornithine transaminases
    2.5e-84  281.4   0.0    6.3e-84  280.0   0.0    1.5  2  TIGR03246 arg_catab_astC: succinylornithine transaminase family
    9.6e-72  240.0   0.0    1.3e-71  239.6   0.0    1.1  1  TIGR03372 putres_am_tran: putrescine aminotransferase
    5.7e-66  220.6   0.0    8.2e-66  220.1   0.0    1.2  1  TIGR00508 bioA: adenosylmethionine-8-amino-7-oxononanoate transaminase
    1.2e-62  209.6   0.8    5.9e-61  204.1   0.5    2.1  1  TIGR00700 GABAtrnsam: 4-aminobutyrate transaminase
    5.5e-55  184.5   0.0    1.3e-33  114.0   0.0    2.2  2  TIGR00709 dat: 2,4-diaminobutyrate 4-transaminase
    7.5e-54  180.7   0.0    1.5e-53  179.7   0.0    1.5  1  TIGR02407 ectoine_ectB: diaminobutyrate--2-oxoglutarate aminotransferase
      3e-44  149.1   0.0    4.3e-44  148.6   0.0    1.1  1  TIGR00713 hemL: glutamate-1-semialdehyde-2,1-aminomutase
    1.5e-41  140.2   0.1    1.7e-39  133.3   0.1    2.1  1  TIGR03251 LAT_fam: L-lysine 6-transaminase
      1e-22   78.4   0.0    6.7e-18   62.5   0.0    2.8  3  TIGR00699 GABAtrns_euk: 4-aminobutyrate aminotransferase


Domain annotation for each model (and alignments):
>> TIGR01885  Orn_aminotrans: ornithine--oxo-acid transaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  566.6   0.0  1.4e-173  5.4e-171       2     401 ..      88     494 ..      87     495 .. 0.97

  Alignments for each domain:
  == domain 1    score: 566.6 bits;  conditional E-value: 1.4e-173
   TIGR01885   2 eevieleekygahnyhplpvvlskaeGakvwdvegkryldflsaysavnqGhchpkivkalveqaqkltlssrafyndvfgefaeyvtklfGydkvlpmntGaeavetaiklarkWgykkkkipedkalilsaegnfhGrtlavislstdpesrenfGpyvpnvkkieynnlealeealeeagekvaaflvePiqGeaGvvvpddgylkkvrelckkynvlliadeiqtGiartGkllaveheevkPdivllGkalsgGvyPvsavladkevmltikpgehGstygGnPlasavavaalevlkeeklaeraeklGeelreelkkl.....kkeivkevrGkGllnaividesk..angreawdlclklkekGllakptheeiirlaPPlviteeelkeaveiikkvl 401
                 +++i le +y ahny+plpvv+++a+Ga+vwd+egk+yldflsaysavnqGhchp iv+a veq +++tl+srafynd+++++a+ vt lf yd vlpmntGaeaveta+klar+Wg  +kk+p+ +++il+a g+fhGrtl++isls+d++s + +Gp++++v+ i+y+++eal++al++ + + ++f+vePiqGe Gv+vp dgyl++++e c+ +  lliade+qtG+artG++la+e+++ +Pd+v+lGkal+gGvyP+s+vlad++vm t++pg hGst+gGnPl++av+ aal+v+ +e l++ra+klGe++ ++ + l     k+ +v e rG+Gll ai +d +     g+++ + c +lk+ G+lak the+ +r+aPPlvi+ee+l++++++i++++
  MMETSP1137-20121227|5425_1  88 DALIGLEGRYVAHNYKPLPVVVARAQGAHVWDPEGKEYLDFLSAYSAVNQGHCHPAIVQAAVEQLSRVTLTSRAFYNDQLPRWAQTVTALFNYDAVLPMNTGAEAVETAVKLARRWGSIVKKVPDGETVILAACGSFHGRTLTAISLSSDEMSSKYHGPLAQGVQLIPYGDVEALRRALKSFEGRAVGFIVEPIQGEGGVLVPPDGYLRECHEACRDHGALLIADEVQTGVARTGRMLASEWDGARPDMVVLGKALGGGVYPISCVLADSAVMGTVTPGVHGSTFGGNPLGCAVSAAALQVIADEALVQRAAKLGEQFEAATQPLvstasKRRLVLEQRGRGLLRAIELDIDWmaQAGTSSTEFCSRLKDLGVLAKATHESTVRFAPPLVISEEDLRRGTDVIAETV 494
                 678899*************************************************************************************************************************************************************************************************************************************************************************************************************************999988776666699*************97765421678999******************************************9987 PP

>> TIGR00707  argD: acetylornithine and succinylornithine transaminases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  338.8   0.0    2e-104  7.3e-102       2     379 ..      98     493 ..      97     495 .. 0.93

  Alignments for each domain:
  == domain 1    score: 338.8 bits;  conditional E-value: 2e-104
   TIGR00707   2 llqtyarlelaivrgkgakvyDveGkeYlDlvaGiavnalGHahpklvealkeqleklvhvsnlyateeqlelaeklvelsaadrvffcnsGaeanEaAlklarkaarkk...gkekkkivafknsFHGRtlgalsatgkpkykkdFeplvpgvkyveyndiealkeaidde...taavivEpiqGEgGvvpadkeflkalrelceekdvllivDEvqtGlGRtGklfayehygvePDiltlakalggGv.PigavlakeevaealtvGdHgstfGGnplacaaalavleviekeellekvkekgeilkkkleellkkki....ikevrGkGLllGieleaesl.......keivkkleekGllvntagekvlrlvppLiieeeeieeavealeev 379
                 + ++y+ l+++++r++ga+v+D eGkeYlD+++  + ++ GH+hp++v+a  eql++++ +s  +++++  + a+ + +l++ d v   n Gaea+E+A+klar+ ++ +      ++ i+a+  sFHGRtl+a+s++ ++  +k+ +pl  gv+ ++y+d+eal++a++       + ivEpiqGEgGv ++   +l++ +e c ++++lli DEvqtG+ RtG+++a e+ g++PD++ l+kalggGv Pi++vla + v  ++t+G HgstfGGnpl ca+++a+l+vi++e+l++++++ ge+++   + l+++      + e rG+GLl  iel+ + +       +e   +l++ G+l +++ e+++r++ppL+i+ee++ +++++++e 
  MMETSP1137-20121227|5425_1  98 VAHNYKPLPVVVARAQGAHVWDPEGKEYLDFLSAYSAVNQGHCHPAIVQAAVEQLSRVTLTSRAFYNDQLPRWAQTVTALFNYDAVLPMNTGAEAVETAVKLARRWGSIVkkvPDGETVILAACGSFHGRTLTAISLSSDEMSSKYHGPLAQGVQLIPYGDVEALRRALKSFegrAVGFIVEPIQGEGGVLVPPDGYLRECHEACRDHGALLIADEVQTGVARTGRMLASEWDGARPDMVVLGKALGGGVyPISCVLADSAVMGTVTPGVHGSTFGGNPLGCAVSAAALQVIADEALVQRAAKLGEQFEAATQPLVSTASkrrlVLEQRGRGLLRAIELDIDWMaqagtssTEFCSRLKDLGVLAKATHESTVRFAPPLVISEEDLRRGTDVIAET 493
                 5689*****************************************************************************************************9875533345688999*********************************************998765565999***********************************************************************88*********************************************************99887766555444568899*********99876522334455788999*******************************99998876 PP

>> TIGR03246  arg_catab_astC: succinylornithine transaminase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0      0.89   3.3e+02     247     265 ..      50      68 ..      46      74 .. 0.79
   2 !  280.0   0.0   1.7e-86   6.3e-84       9     396 ..      97     497 ..      94     498 .. 0.92

  Alignments for each domain:
  == domain 1    score: -2.2 bits;  conditional E-value: 0.89
   TIGR03246 247 akalGgGfpiGalltteel 265
                 a++  +G p+Gallt++++
  MMETSP1137-20121227|5425_1  50 ARSPVEGSPVGALLTSQRT 68 
                 66667899*******9875 PP

  == domain 2    score: 280.0 bits;  conditional E-value: 1.7e-86
   TIGR03246   9 vmvpvyapakfipvrgeGsrvwdqegkeyidfaGGiavnalGhahpelvealkeqaeklwhlgngytnepvlrlakklvdatfadkvffcnsGaeaneaalklarkva..ldkygaekseivafknsfhGrtlftvsvGGqakysedfaplpegikhaayndlealkalisd...ktcavivepiqGegGvvpadkaflkglrelcdrhnallifdevqtGvGrtGelyaymeyGvtpdiltsakalGgG.fpiGalltteelakvlkvGthGttyGGnplacavaekvldlvntaelleGvkqrhelf...vdelekinarykvfseirGkGlliGavlteeyaGka....kdlvnaaaeeGvlvliaGpdvvrfapslvieeeeikeGlarlekavekl 396
                 ++  +y p ++++ r++G++vwd egkey+df    +    Gh+hp++v+a  eq +++  ++ ++ n+   r a+ ++     d v   n+Gaea e+a+klar+++  ++k  +  + i+a   sfhGrtl ++s       s+ ++pl +g++ ++y d+eal+++++    ++  +ivepiqGegGv+ + + +l++  e+c +h+alli devqtGv rtG++ a    G  pd++   kalGgG +pi  +l+ +++  +++ G+hG+t+GGnpl+cav+++ l+++ + +l++   +  e+f   ++ l +  ++ ++  e rG+Gll   +l+ ++  +a     ++ +  ++ Gvl+  +  + vrfap lvi+ee++ +G + ++++v+++
  MMETSP1137-20121227|5425_1  97 YVAHNYKPLPVVVARAQGAHVWDPEGKEYLDFLSAYSAVNQGHCHPAIVQAAVEQLSRVTLTSRAFYNDQLPRWAQTVTALFNYDAVLPMNTGAEAVETAVKLARRWGsiVKKVPDGETVILAACGSFHGRTLTAISLSSDEMSSKYHGPLAQGVQLIPYGDVEALRRALKSfegRAVGFIVEPIQGEGGVLVPPDGYLRECHEACRDHGALLIADEVQTGVARTGRMLASEWDGARPDMVVLGKALGGGvYPISCVLADSAVMGTVTPGVHGSTFGGNPLGCAVSAAALQVIADEALVQRAAKLGEQFeaaTQPLVSTASKRRLVLEQRGRGLLRAIELDIDWMAQAgtssTEFCSRLKDLGVLAKATHESTVRFAPPLVISEEDLRRGTDVIAETVAEF 497
                 66789****************************99998899***********************************99999999***********************733466666778899********************************************98775322278899********************************************************************9967*********************************************999887766666111556777788999********************98863223578889999******************************9999998765 PP

>> TIGR03372  putres_am_tran: putrescine aminotransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  239.6   0.0   3.5e-74   1.3e-71      63     432 ..     112     484 ..     101     493 .. 0.89

  Alignments for each domain:
  == domain 1    score: 239.6 bits;  conditional E-value: 3.5e-74
   TIGR03372  63 asglntlvdtqgqeyldclggygifnvghrnpvvvaavesqlakqplhsqelldplrallaktlaaltpgklkysffsnsgtesveaalklakayqs.....prgkytfiaasgafhgkslgalsataksafrkpfmpllpgfrhvafgdieamlkalqeckktgddvaavilepiqgeggvilppenyltavrklcdevgallildevqtgmgrtgkmfacehenvqpdilclakalgggvmpigatvateevfsvlfenpflhtttfggnplacaaalatvnvlleknlpeqaeikgellldglrqla..aeypdlvieargkgllqaiefvdneigyaf.akelfrrrvlvagtlnna...ksvrieppltltieqce 432
                 a g   + d +g+eyld l  y   n gh  p++v a  +ql++  l s+ + +      a+t++al   +    +  n+g+e+ve+a+kla+ + s     p g   ++aa+g+fhg++l a+s ++     k   pl  g + +++gd+ea+++al+  +  g  v   i+epiqgeggv++pp++yl    + c + galli devqtg+ rtg+m+a e ++ +pd+++l kalgggv pi + +a  +v+  +   p +h +tfggnpl ca + a+++v+ ++ l ++a++ ge +    + l   a    lv e rg+gll+aie+  + +  a  ++  f  r+   g l +a    +vr  ppl ++ e+  
  MMETSP1137-20121227|5425_1 112 AQGA-HVWDPEGKEYLDFLSAYSAVNQGHCHPAIVQAAVEQLSRVTLTSRAFYNDQLPRWAQTVTALF--NYDAVLPMNTGAEAVETAVKLARRWGSivkkvPDGETVILAACGSFHGRTLTAISLSSDEMSSKYHGPLAQGVQLIPYGDVEALRRALKSFE--GRAV-GFIVEPIQGEGGVLVPPDGYLRECHEACRDHGALLIADEVQTGVARTGRMLASEWDGARPDMVVLGKALGGGVYPISCVLADSAVMGTV--TPGVHGSTFGGNPLGCAVSAAALQVIADEALVQRAAKLGEQFEAATQPLVstASKRRLVLEQRGRGLLRAIELDIDWMAQAGtSSTEFCSRLKDLGVLAKAtheSTVRFAPPLVISEEDLR 484
                 5554.35699*******************************************999999********7..55667889**************988654444499999***************************************************9875..5444.6789*********************************************************************************9987..699**************************************9999999862245678***************9887777664145567777777777765522269*********999765 PP

>> TIGR00508  bioA: adenosylmethionine-8-amino-7-oxononanoate transaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  220.1   0.0   2.2e-68   8.2e-66      10     418 ..     102     494 ..      97     495 .. 0.90

  Alignments for each domain:
  == domain 1    score: 220.1 bits;  conditional E-value: 2.2e-68
   TIGR00508  10 eaepplavekaegvyltdedgkeliDgisSwwvavhGhnhpelneaikeqleklehvifaglthepaieLaekLveilpeglekvffsdsGsvavEvalKmalqywqnkge..kekkkflalengYHGdTlgamsvgdvelfhelfeellfeqvkvpapevalekkeeekeeevleeleklleehaeeiaalivEPlvqgagGmrvyspeyLkklrelcdeydvlliaDEiatGfgrtGklFacehagvtPDilclsKaltgGylplaatltteeiyeaflsdeeekaflHghtytgnplacavAlaslelleeeeilekvkeieaqlkeelee....lkelpkvkdvRvlGaigavelkee.keleerigekiqkkalekgvllRPlg.nviylmppyiiteeeleklveaikeai 418
                  +  p++v++a+g++++d +gke++D +s++ ++  Gh+hp++ +a  eql+++   +   + +++  + a+ ++++   + + v+  + G+ avE a+K+a ++ +  ++     + +la  +++HG Tl+a+s++++e+ ++ + +l + +  +p+ +              +e+l+++l++ + +  ++ivEP +qg gG+ v +  yL++++e+c++++ lliaDE+ tG+ rtG++ a+e  g  PD+++l+Kal gG++p++++l++++++ +++ +       Hg+t+ gnpl+cav++a+l+++++e ++++++++ +q+++++++    +++ + v + R  G++ a+el+ + ++++ + ++++++++ + gvl +  + +++ + pp++i+ee+l++ +++i+e++
  MMETSP1137-20121227|5425_1 102 YKPLPVVVARAQGAHVWDPEGKEYLDFLSAYSAVNQGHCHPAIVQAAVEQLSRVTL-TSRAFYNDQLPRWAQTVTALF--NYDAVLPMNTGAEAVETAVKLARRWGSIVKKvpDGETVILAACGSFHGRTLTAISLSSDEMSSKYHGPLAQGVQLIPYGD--------------VEALRRALKSFEGRAVGFIVEP-IQGEGGVLVPPDGYLRECHEACRDHGALLIADEVQTGVARTGRMLASEWDGARPDMVVLGKALGGGVYPISCVLADSAVMGTVTPGV------HGSTFGGNPLGCAVSAAALQVIADEALVQRAAKLGEQFEAATQPlvstASKRRLVLEQRGRGLLRAIELDIDwMAQAGTSSTEFCSRLKDLGVLAKATHeSTVRFAPPLVISEEDLRRGTDVIAETV 494
                 4667899********************************************99975.566799999***********9..99********************99987655532578999999***************97766666666666666666666..............57899999999999********.8*******************************************************************************9999985......**********************************99999988873211345677999***************6555789999*************987526899*****************999986 PP

>> TIGR00700  GABAtrnsam: 4-aminobutyrate transaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  204.1   0.5   1.6e-63   5.9e-61      15     418 ..     105     494 ..      99     496 .. 0.83

  Alignments for each domain:
  == domain 1    score: 204.1 bits;  conditional E-value: 1.6e-63
   TIGR00700  15 lrvlaakaegaelkdvdGnrlidlaagiavlnvGhshPkvveavkrqveelthtafqvvpyesyv.elaeklnaiaPgsgekkavllnsGaeavenavkiarkyt........grpgvvafsrgfhGrtnltmaltakvkPykiGfGPfapevyraPlpydyrdialdkqeslddelaaiealfvadveaeqvaavvlePvqGeGGfivpakelvaavaslckehgivliadevqtGfartGklfaieheddkPdlitvaksladGl.PlsgvvGraeildapapGglGGtyaGnPlavaaalavldiieeeglieraeqigklvk...dklielkeevpaigdvrglGamiavelvdpdttePdaalaekiaaaalaaGlllltaGifGniirlltPltisdelldeglkileaal 418
                 l+v++a+a+ga + d +G++++d+ ++ + +n Gh hP +v+a  +q+ ++t t+     y+  +   a+ ++a+    +    + +n+Gaeave avk+ar++         g   ++a  ++fhGrt  +++l++  +  k+  GP+a  v  +P+                  ++a+++    + e + v   ++eP+qGeGG  vp+++++ + ++ c++hg +liadevqtG artG+++a e  + +Pd++++ k+l +G+ P+s+v+  + ++ + +pG  G t++GnPl++a + a l++i +e+l++ra ++g+  +   + l+ +  +   + + rg+G + a+el   d      + + +  ++ +  G+  l+   +   +r+ +Pl+is+e l  g +++ +++
  MMETSP1137-20121227|5425_1 105 LPVVVARAQGAHVWDPEGKEYLDFLSAYSAVNQGHCHPAIVQAAVEQLSRVTLTSRA--FYNDQLpRWAQTVTAL---FNYDAVLPMNTGAEAVETAVKLARRWGsivkkvpdGETVILAACGSFHGRTLTAISLSSDEMSSKY-HGPLAQGVQLIPYGD----------------VEALRRAL-KSFEGRAV-GFIVEPIQGEGGVLVPPDGYLRECHEACRDHGALLIADEVQTGVARTGRMLASEWDGARPDMVVLGKALGGGVyPISCVLADSAVMGTVTPGVHGSTFGGNPLGCAVSAAALQVIADEALVQRAAKLGEQFEaatQPLVSTASKRRLVLEQRGRGLLRAIELD-IDWMAQAGTSSTEFCSRLKDLGV--LAKATHESTVRFAPPLVISEEDLRRGTDVIAETV 494
                 57899********************************************99998754..3444331445555444...455556679***************985332222223455779999*****************9997.79****999999853................22333322.23455555.4678********************************************************************77******************************************************988611145677778888999************96.34444445555566677777776..567788999*******************998876 PP

>> TIGR00709  dat: 2,4-diaminobutyrate 4-transaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.2   0.0   2.8e-22   1.1e-19      19     172 ..     103     258 ..      96     269 .. 0.83
   2 !  114.0   0.0   3.6e-36   1.3e-33     208     436 ..     274     497 ..     266     505 .. 0.82

  Alignments for each domain:
  == domain 1    score: 68.2 bits;  conditional E-value: 2.8e-22
   TIGR00709  19 rklplafakakGckvtdveGkeyldflaGaGtlalGhndealkqklkdvldsglvlhtldlttklkdafieallaillkpkeeyilqftGpsGadaveaalklakkyt........GrsnvisfsgGfhGmtiGalaltGnlsaknavenllsgvqflpydh 172
                 + lp+++a+a+G +v+d eGkeyldfl+   +++ Gh ++a++q+  + l+  ++l +  +       +++ + a++     +y   ++  +Ga+ave+a+kla+++         G + +++  g fhG t  a++l+ + +     + l  gvq++py +
  MMETSP1137-20121227|5425_1 103 KPLPVVVARAQGAHVWDPEGKEYLDFLSAYSAVNQGHCHPAIVQAAVEQLSR-VTLTSRAFYNDQLPRWAQTVTALF-----NYDAVLPMNTGAEAVETAVKLARRWGsivkkvpdGETVILAACGSFHGRTLTAISLSSDEMSSKYHGPLAQGVQLIPYGD 258
                 579*****************************************99988865.344444444444455555555555.....599999****************9763223333349999************************9999************75 PP

  == domain 2    score: 114.0 bits;  conditional E-value: 3.6e-36
   TIGR00709 208 aavileaiqGeGGvvaasveflrkirevtrkrdillildevqaGvarsGklfafehaGiepdvvvlskavGG.glpla.vlaikkefdafqpaehtGtfrGnqlalatGlealeilkdenlaknaqergerltsalddl...ikeypeiknvrGrGlmlGieivderkskdaigaypadselaaaiqkacfenklllekgGregevvrllcpvtiddeeleevlsrlkqaveea 436
                   +i+e iqGeGGv   +  +lr+ +e +r+++ lli devq+Gvar+G+++a e  G +pd+vvl ka+GG   p++ vla      +  p+ h  tf Gn l  a   +al+++ de l + a + ge++ +a + l   + +   + + rGrGl+  ie  ++  ++  + +    s+         +++  +l k+  e + vr+ +p++i++e+l ++  ++ ++v+e 
  MMETSP1137-20121227|5425_1 274 VGFIVEPIQGEGGVLVPPDGYLRECHEACRDHGALLIADEVQTGVARTGRMLASEWDGARPDMVVLGKALGGgVYPIScVLADSAVMGTVTPGVHGSTFGGNPLGCAVSAAALQVIADEALVQRAAKLGEQFEAATQPLvstASKRRLVLEQRGRGLLRAIELDIDWMAQAGTSSTEFCSR---------LKDLGVLAKATHEST-VRFAPPLVISEEDLRRGTDVIAETVAEF 497
                 569********************************************************************955799724555667899**********************************99988887766655551115667778889**********9999844444433332222.........344456777776655.6999999999999999999999998864 PP

>> TIGR02407  ectoine_ectB: diaminobutyrate--2-oxoglutarate aminotransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  179.7   0.0   4.1e-56   1.5e-53      15     411 ..     103     495 ..      94     496 .. 0.83

  Alignments for each domain:
  == domain 1    score: 179.7 bits;  conditional E-value: 4.1e-56
   TIGR02407  15 rsfptvfekakgaklldedgkeyidflagaGalnyGhnneklkealldylaedgivhsldmateakkefletfeevilkPreldykvqftgPtGtnavesalklark.......v.tgrenvvaftnafhGmslgslavtgnkskreeagvslsnvvrlPydgyldeevdslayleklledsssGvdlPaaviletvqgeGGlnvaskeWlrsleklcrehdillivddiqaGcGrtGtffsfeeagikPdivclsksisGiGlPlalvllkpe.ldvwkPgehnGtfrGnnlafvaataalekyWkddelekavkkksekvkerleeivekype..lkkearGrGllqGlevkkedlakkvak.kafe...kgliietsGaedevlkllpaltideeelekGleileqale 411
                 +  p+v+ +a+ga+++d +gkey+dfl++  a+n Gh ++++ +a ++ l++  ++     +    ++ l ++ +++     ++y   ++  tG++ave+a+klar+       v  g + ++a   +fhG +l+++++++++++ +  g   + v  +Py +        ++ l++ l+       +   +i+e +qgeGG+ v  + +lr+ ++ cr+h+ lli d++q+G+ rtG++++ e  g +Pd+v+l k+++G   P++ vl     + + +Pg h  tf Gn l    ++aal+   +d++l ++  k +e++++  + +v++ ++  l+ e+rGrGll+ +e+  + +a+  ++ + f    k+l +    +++  +++ p+l i+ee+l++G ++++++++
  MMETSP1137-20121227|5425_1 103 KPLPVVVARAQGAHVWDPEGKEYLDFLSAYSAVNQGHCHPAIVQAAVEQLSRVTLTS-RAFY----NDQLPRWAQTVTA--LFNYDAVLPMNTGAEAVETAVKLARRwgsivkkVpDGETVILAACGSFHGRTLTAISLSSDEMSSKYHGPLAQGVQLIPYGD--------VEALRRALKSFE---GRAVGFIVEPIQGEGGVLVPPDGYLRECHEACRDHGALLIADEVQTGVARTGRMLASEWDGARPDMVVLGKALGGGVYPISCVLADSAvMGTVTPGVHGSTFGGNPLGCAVSAAALQ-VIADEALVQRAAKLGEQFEAATQPLVSTASKrrLVLEQRGRGLLRAIELDIDWMAQAGTSsTEFCsrlKDLGVLAKATHESTVRFAPPLVISEEDLRRGTDVIAETVA 495
                 5689********************************************998765543.2333....3445555555543..479*********************9733321113235667789999*********************************964........334666665433...244568*********************************************************************99*******98762789************************9.599**********************988765116699***********98877776533212333111233344445566788********************99986 PP

>> TIGR00713  hemL: glutamate-1-semialdehyde-2,1-aminomutase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  148.6   0.0   1.2e-46   4.3e-44      28     339 ..     103     415 ..      96     428 .. 0.86

  Alignments for each domain:
  == domain 1    score: 148.6 bits;  conditional E-value: 1.2e-46
   TIGR00713  28 kgtPlfvekakgallldvdgneyiDyvlsyGplilGhahekvveavkealerGlsyG..apteaeielakeiiervksvekvRlvnsGteatmsavRlaRgft........grdkiikfeGcyhGhaDalLvkagsgaatlglpsslgvpeeaakltlvlpyndlealeevleelgeeiagvivepvagnmgvvlpkkeflealrelteengallilDevvtGF.RvalegaqelygvepDlvvlGkilggGl.PvgalggrreimerlaPeGkvyqaGtlsgnplavaaGlatlkaleeeevykeleelaeklaegleevlee 339
                 k+ P++v++a+ga ++d +g+ey+D++ +y ++  Gh h+++v+a  e+l r +       +++  + a++++  ++  + v  +n+G+ea  +av+laR           g   i+   G++hG + + +     +        s +     a+ +  +py d+eal+++l++++ +  g ivep+ g  gv+ p +++l++ +e ++++galli Dev tG  R  +  a e+ g +pD+vvlGk lggG+ P++++ +   +m +++P   v    t+ gnpl  a   a+l+ +++e + ++ ++l e+++++ + ++++
  MMETSP1137-20121227|5425_1 103 KPLPVVVARAQGAHVWDPEGKEYLDFLSAYSAVNQGHCHPAIVQAAVEQLSRVTLTSraFYNDQLPRWAQTVTALFNY-DAVLPMNTGAEAVETAVKLARRWGsivkkvpdGETVILAACGSFHGRTLTAIS---LSS----DEMSSKYHGPLAQGVQLIPYGDVEALRRALKSFEGRAVGFIVEPIQGEGGVLVPPDGYLRECHEACRDHGALLIADEVQTGVaRTGRMLASEWDGARPDMVVLGKALGGGVyPISCVLADSAVMGTVTPG--V-HGSTFGGNPLGCAVSAAALQVIADEALVQRAAKLGEQFEAATQPLVST 415
                 6889***********************************************987654105566777899999888765.678889***************76422222223567899999*****8744433...222....233556666777888899***************************************************************76999999*********************66*****************6..3.578**********************************99988777665 PP

>> TIGR03251  LAT_fam: L-lysine 6-transaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  133.3   0.1   4.6e-42   1.7e-39      22     432 ..     108     494 ..      95     495 .. 0.81

  Alignments for each domain:
  == domain 1    score: 133.3 bits;  conditional E-value: 4.6e-42
   TIGR03251  22 dleksrGsvlvdardGrryldlfsffassalGmnhPaladdaefrerlaavavnkpsnsdvytvemarfvdtfarv.lvdpalPhlffieGGalavenalktafdwksrkneargieaelGtkvlhlrqafhGrsGytlsltntdPrktarfPkfdwPridaPkltfpldaeeldavkaleeealaqakaafaeeeddiaaliiePiqgeGGdnhlrpeflralrklcdehdallvldevqtGvGltGkawayqqlgvkPdvvafGkktqvcGila.grrvdevadnvfkvssrlnstfGGnlvdmvratrileiieeerlvdrareqGehllarleelaae..fpklvsnprGrGllcafdlp......stelrdelvkalyrekvlvlgaGekairfrpaltvseeeidealdairrvl 432
                  +++++G+++ d  +G++yld+ s +++   G+ hPa++  ++  e+l++v++    +   y  ++ r+ +t + +   d+ lP    ++ Ga ave a+k a  w s   +     ++  t +l   ++fhGr+  ++sl+  +   +    k+  P             ++ + +   + eal++a ++f+ +     ++i+ePiqgeGG       +lr+ ++ c++h all+ devqtGv  tG++ a +  g +Pd+v++Gk    +G+   +  + + a     +++   stfGGn          l++i +e lv+ra+++Ge++ a  + l +     +lv + rGrGll a++l       + +   e+ ++l   +vl  ++ e+++rf p+l++see++ ++ d+i +++
  MMETSP1137-20121227|5425_1 108 VVARAQGAHVWDP-EGKEYLDFLSAYSAVNQGHCHPAIV--QAAVEQLSRVTLT---SRAFYNDQLPRWAQTVTALfNYDAVLP----MNTGAEAVETAVKLARRWGSIVKK----VPDGETVILAACGSFHGRTLTAISLSSDEMS-S----KYHGPLA-----------QGVQLIPYGDVEALRRALKSFEGR---AVGFIVEPIQGEGGVLVPPDGYLRECHEACRDHGALLIADEVQTGVARTGRMLASEWDGARPDMVVLGKALG-GGVYPiSCVLADSAVMGTVTPGVHGSTFGGNPLGCAVSAAALQVIADEALVQRAAKLGEQFEAATQPLVSTasKRRLVLEQRGRGLLRAIELDidwmaqAGTSSTEFCSRLKDLGVLAKATHESTVRFAPPLVISEEDLRRGTDVIAETV 494
                 4678999999996.7***********************5..5667999999985...566899999999999877625677888....689***************987544....344556778899************9875543.3....3333433...........344455566678888887777665...589***********9999999***********************************************9754.5665413333444444445788889******999999999***********************9999965511557**************98622211133456789999***********************************98875 PP

>> TIGR00699  GABAtrns_euk: 4-aminobutyrate aminotransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.0   0.0   3.6e-05     0.013       9     142 ..      74     200 ..      69     215 .. 0.72
   2 ?   -0.2   0.0      0.18        68     175     195 ..     214     234 ..     204     244 .. 0.80
   3 !   62.5   0.0   1.8e-20   6.7e-18     243     451 ..     264     481 ..     257     495 .. 0.82

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 3.6e-05
   TIGR00699   9 tgPklkteiPGPkskaalkelnevfdvravkfladyekslGnylvdvdGnvlldlyaqiasipiGynnPallkvakspevatalinrPalGnfpskdlakilkegilkvaPkgldsvysalaGsdanelafkaa 142
                 t+P+  te P   s a++   +++   +   +++   ++ G ++ d +G  +ld  +  +++  G+ +Pa++++a ++    +l  r         +l + +++    +a    d v  + +G++a e+a k+a
  MMETSP1137-20121227|5425_1  74 TAPTADTESPNLSSDALIGLEGRYVAHNYKPLPVVVARAQGAHVWDPEGKEYLDFLSAYSAVNQGHCHPAIVQAAVEQLSRVTLTSRAFYND----QLPRWAQT---VTALFNYDAVLPMNTGAEAVETAVKLA 200
                 5677777777777777766666666666666777788999*********************************9998877778877754333....33333333...122334566677777777777777766 PP

  == domain 2    score: -0.2 bits;  conditional E-value: 0.18
   TIGR00699 175 elavlsfkaafhGrlfgslst 195
                 e  +l+   +fhGr+++++s 
  MMETSP1137-20121227|5425_1 214 ETVILAACGSFHGRTLTAISL 234
                 457899999*******98875 PP

  == domain 3    score: 62.5 bits;  conditional E-value: 1.8e-20
   TIGR00699 243 elikkyrkpvaaiivePiqseGGdnhasddffrklrditkkhnvvfivdevqtGvGatGklwahehwnleePadlvtfskklqtaGyf.....fhdealr.PnkpyrqfntwlGdPsralllreiieeikdkdllenvaavGdylyagleelakkyPeklqnlrgkGrGtf......iawdtpdeakrdklllklklkGvniGGcgvkavrlrPslvfqkh 451
                 + +k+++ + ++ ivePiq eGG     d ++r+ ++  + h+ + i devqtGv  tG++ a e w+    +d+v + k l  +G++       d a++    p  +  t+ G+P    ++++ ++ i d+ l++++a+ G+ + a  + l     ++   l  +GrG +      i w +++++   +++ +lk  Gv    + +++vr+ P lv  ++
  MMETSP1137-20121227|5425_1 264 RALKSFEGRAVGFIVEPIQGEGGVLVPPDGYLRECHEACRDHGALLIADEVQTGVARTGRMLASE-WDGAR-PDMVVLGKAL-GGGVYpiscvLADSAVMgTVTPGVHGSTFGGNPLGCAVSAAALQVIADEALVQRAAKLGEQFEAATQPLVSTASKRRLVLEQRGRGLLraieldIDWMAQAGTSSTEFCSRLKDLGVLAKATHESTVRFAPPLVISEE 481
                 5578889999*****************************************************87.66554.6999998765.566662222244555441446788999***********************************99999998888777666666677765222222445566778899***************************99875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (583 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       115  (0.0280351); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                        11  (0.00268162); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.62u 0.17s 00:00:00.79 Elapsed: 00:00:00.84
# Mc/sec: 916.07
//
Query:       MMETSP1137-20121227|5426_1  [L=427]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.9e-29  100.0   0.8    3.3e-26   89.9   0.1    2.0  2  TIGR02483 PFK_mixed: phosphofructokinase
    1.5e-20   71.3   0.0    3.8e-20   69.9   0.0    1.7  1  TIGR02482 PFKA_ATP: 6-phosphofructokinase
    5.9e-17   58.9   0.0    2.9e-15   53.3   0.0    2.1  1  TIGR02478 6PF1K_euk: 6-phosphofructokinase
    1.1e-12   45.0   0.0    2.6e-12   43.8   0.0    1.5  1  TIGR02477 PFKA_PPi: diphosphate--fructose-6-phosphate 1-phosphotransferase
  ------ inclusion threshold ------
      0.024   12.6   0.0      0.049   11.6   0.0    1.5  1  TIGR00250 RNAse_H_YqgF: RNAse H domain protein, YqgF family


Domain annotation for each model (and alignments):
>> TIGR02483  PFK_mixed: phosphofructokinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.9   0.1   4.1e-29   3.3e-26       1     180 [.      23     222 ..      23     227 .. 0.85
   2 !    8.7   0.0   0.00021      0.17     189     267 ..     251     334 ..     242     374 .. 0.79

  Alignments for each domain:
  == domain 1    score: 89.9 bits;  conditional E-value: 4.1e-29
   TIGR02483   1 kigvltgGGDcpGLnaviravvkk.aiaeygaevvgiregykGlleedlvkll..dledvegilarGGtilgssrtnpfkkeeeae...........dkikenlkelgldaliaiGGdgtlkiakelae.....kgglkvvGvPktiDnDleatdvtfGfdtaveiatealdrlkttaesheRvlvv.evmGReaGwiaL 180
                 k+++lt+GG +p L  ++ a++ + a+++  +e++ + +gykGll  +++k     + +   +  +GG  +g sr +  + +   +           + + ++l + g+++l +iGGd+t ++a +l++     ++ l v+G+PktiDnD+    +++G  ta e      + +    ++  R+++v evmGR+ Gw++ 
  MMETSP1137-20121227|5426_1  23 KVAILTAGGLAPCLSSAVGALITEyAVTHPSTEIICYVNGYKGLLLGESIKVTpaIRATAGALHLHGGSPIGNSRVKLTNVKDCVKrglvkegenpqQVAADQLVRDGVEVLHTIGGDDTNTAAADLSRflkqmNYHLCVIGLPKTIDNDVFPIKQSLGAWTAAEEGARFFENVVAEHSANPRMMIVhEVMGRDCGWLTA 222
                 89**************999987643888999**************977777431034455668889********99998866555578999**999666778999*******************998754333367899***********************************9999999***99879********975 PP

  == domain 2    score: 8.7 bits;  conditional E-value: 0.00021
   TIGR02483 189 dviliPevpfdidevvekveereergkkfaivvvaegakpkegelal....kekakdaageerlgGi..gkalaeeiekrlgkea 267
                 +++ +Pevp+ i++ ++++++  +   ++  + ++ega  k+    l    ke ++da+g+++l  i  gk+ a++ +  +g+e 
  MMETSP1137-20121227|5426_1 251 HAVYLPEVPVXIEAEATRLKQILDDHDNVN-IFISEGAGVKDIVARLeaegKEVERDAFGHVKLDLInpGKYFADTFSGLIGAEK 334
                 7899******************99966555.689***999887544421226777889999998766558899998888888775 PP

>> TIGR02482  PFKA_ATP: 6-phosphofructokinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.9   0.0   4.6e-23   3.8e-20       1     180 [.      23     225 ..      23     230 .. 0.77

  Alignments for each domain:
  == domain 1    score: 69.9 bits;  conditional E-value: 4.6e-23
   TIGR02482   1 kigiLtsGGDapGmnaairavv.ktalaq.glevygirkGykGliegeivkle..skavse.iiekGGtilksaRle..eFkk..........eevrekavenlkklgiealvviGGdGsyaGakklae.....eggikviglPgtiDnDiagtdytiGfDtalntileavdkirDtatsheraflv.evmGreagdlallaa 180
                 k++iLt+GG ap + +a+ a++  +a+++   e++   +GykGl+ ge +k++   +a ++ +  +GG  ++ +R++  + k           e+ ++ a+++l + g+e l  iGGd + + a  l +     ++++ viglP tiDnD+     ++G  ta        +++    ++  r+++v evmGr++g l+  +a
  MMETSP1137-20121227|5426_1  23 KVAILTAGGLAPCLSSAVGALItEYAVTHpSTEIICYVNGYKGLLLGESIKVTpaIRATAGaLHLHGGSPIGNSRVKltNVKDcvkrglvkegENPQQVAADQLVRDGVEVLHTIGGDDTNTAAADLSRflkqmNYHLCVIGLPKTIDNDVFPIKQSLGAWTAAEEGARFFENVVAEHSANPRMMIVhEVMGRDCGWLTAATA 225
                 79****************986516676653799************998777762234445505568*********863344322222222222445899************************99876522222345889**************************99999999887777777666559********987654 PP

>> TIGR02478  6PF1K_euk: 6-phosphofructokinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.3   0.0   3.5e-18   2.9e-15       1     205 [.      22     225 ..      22     229 .. 0.75

  Alignments for each domain:
  == domain 1    score: 53.3 bits;  conditional E-value: 3.5e-18
   TIGR02478   1 kkiavltsGGDaqGmnaavravvr.aaiav.gckvylireGyeGlvdGGdl.ikelkWedvsgilslGGtliGtarck..efre..r.....eG...rlkaaknlvkkgidalvviGGdGsLtgadlfreeWsslleeLveegkiteeqakeyreLtivGlvgsiDnDlvgtDatiGadsalhriieavDaisstaashqrafvv.evmGrhCGyLallaa 205
                 kk+a+lt+GG a+ +++av a +   a+++  +++    +Gy+Gl+ G ++ +  +  +  +++  +GG+ iG +r k  ++++  +     eG   +  aa +lv+ g++ l  iGGd   t+a     + s++l+                 +L ++Gl   iDnD+    +++Ga +a +      +++++  +++ r+ +v evmGr+CG+L+  +a
  MMETSP1137-20121227|5426_1  22 KKVAILTAGGLAPCLSSAVGALITeYAVTHpSTEIICYVNGYKGLLLGESIkVTPAIRATAGALHLHGGSPIGNSRVKltNVKDcvKrglvkEGenpQQVAADQLVRDGVEVLHTIGGDDTNTAAA----DLSRFLKQ-------------MNYHLCVIGLPKTIDNDVFPIKQSLGAWTAAEEGARFFENVVAEHSANPRMMIVhEVMGRDCGWLTAATA 225
                 68*******************8751577661455666669*******95531345566666777778********987222222112011113322234588899999999999999998888774....34555543.............3468**************************************99999999988769********986544 PP

>> TIGR02477  PFKA_PPi: diphosphate--fructose-6-phosphate 1-phosphotransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.8   0.0   3.2e-15   2.6e-12      63     255 ..      17     222 ..       6     229 .. 0.79

  Alignments for each domain:
  == domain 1    score: 43.8 bits;  conditional E-value: 3.2e-15
   TIGR02477  63 keskalkvGvilsGgqapGGHnvilGlfdalkklnkeskLlGFlggpeGllknkyveltkelike...yrntGGfdiigsgrtkieteeqf.............ekaletvkklkldglviiGGddsntnaalLAeyfakkklkikviGvPktidgDLknklietsfGFdtackvyseligniarDalsakkyyhFiklmGrsashiaL 255
                   + + kv ++ +Gg ap     +  l  +   ++++++++ +++g +Gll  + +++t  + ++    + +GG   ig++r k++  ++              + a+++  +  ++ l  iGGdd nt+aa L    ++ +++  viG+Pktid D+    i+ s+G  ta+   + +  n+  +  +  +      +mGr   +++ 
  MMETSP1137-20121227|5426_1  17 LGHPPKKVAILTAGGLAPCLSSAVGALITEYAVTHPSTEIICYVNGYKGLLLGESIKVTPAIRATagaLHLHGG-SPIGNSRVKLTNVKDCvkrglvkegenpqQVAADQLVRDGVEVLHTIGGDDTNTAAADLSRFLKQMNYHLCVIGLPKTIDNDV--FPIKQSLGAWTAAEEGARFFENVVAEHSANPRMMIVHEVMGRDCGWLTA 222
                 5678899****************************************************988765221445566.6789999888765543111111111000023344445556677889************************************8..679********************99988888888888899999887765 PP

>> TIGR00250  RNAse_H_YqgF: RNAse H domain protein, YqgF family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0     6e-05     0.049      24      66 ..     133     175 ..     121     197 .. 0.88

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 6e-05
   TIGR00250  24 gleaikaqdaeqdyeriekllkeykvdkivvGlPlnmdGtvgs 66 
                  l++i  +d++   + +++ lk+++    v+GlP+++d +v +
  MMETSP1137-20121227|5426_1 133 VLHTIGGDDTNTAAADLSRFLKQMNYHLCVIGLPKTIDNDVFP 175
                 57899999999999***********************988755 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (427 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       158  (0.0385178); expected 82.0 (0.02)
Passed bias filter:                      127  (0.0309605); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.40u 0.14s 00:00:00.54 Elapsed: 00:00:00.53
# Mc/sec: 1063.38
//
Query:       MMETSP1137-20121227|5427_1  [L=288]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.5e-12   44.5   0.0    5.9e-12   44.1   0.0    1.2  1  TIGR01444 fkbM_fam: methyltransferase, FkbM family


Domain annotation for each model (and alignments):
>> TIGR01444  fkbM_fam: methyltransferase, FkbM family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.1   0.0   1.4e-15   5.9e-12       2     136 ..      40     189 ..      39     197 .. 0.83

  Alignments for each domain:
  == domain 1    score: 44.1 bits;  conditional E-value: 1.4e-15
   TIGR01444   2 viDiGAniGdvslvfaravaegrviafEPlpdllekleen..vklnnlkn.vkllnaAvgdreg...eleftvsddatgnsslaads............elaeeseieVevvtlddlveeaglekvdllKiDvEGaEleVLrglaetleekvp 136
                 v+DiG n G  s +++ +++   via+E++p l +k++ +  ++    +  ++l++aA+ +++    +++f v   ++++ssl+               ++++++e+ V+++t d l++++g+  + ++KiD+E  + + L +l++  +e  p
  MMETSP1137-20121227|5427_1  40 VVDIGLNQGGDSKMYLALGYD--VIAIEANPVLSSKAKLQpdFAVASQQGrFELVEAAIASSTLqneNVTFYVNLVNDEHSSLQKAAgcrrfpkngyttSEKNCTEVLVPTTTCDALISKRGI-APVMVKIDIELGDRDCLLQLQSLPRELLP 189
                 89*****************97..********99876655411555555558********99765555999999999999999999999*9999988766555555*****************7.599**********9999999887666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (288 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        60  (0.014627); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.25u 0.17s 00:00:00.42 Elapsed: 00:00:00.42
# Mc/sec: 905.07
//
Query:       MMETSP1137-20121227|5429_1  [L=584]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      2e-10   38.2   0.0    1.1e-08   32.5   0.0    2.6  2  TIGR03169 Nterm_to_SelD: pyridine nucleotide-disulfide oxidoreductase family protein
      2e-05   21.2   0.0    3.1e-05   20.5   0.0    1.2  1  TIGR01424 gluta_reduc_2: glutathione-disulfide reductase
    5.3e-05   19.9   0.0    9.3e-05   19.1   0.0    1.4  1  TIGR01350 lipoamide_DH: dihydrolipoyl dehydrogenase
    0.00013   18.7   0.0     0.0034   14.0   0.0    2.5  2  TIGR03385 CoA_CoA_reduc: CoA-disulfide reductase


Domain annotation for each model (and alignments):
>> TIGR03169  Nterm_to_SelD: pyridine nucleotide-disulfide oxidoreductase family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.0     0.013        14       3      88 ..     116     196 ..     114     201 .. 0.75
   2 !   32.5   0.0     1e-11   1.1e-08      93     288 ..     222     455 ..     217     482 .. 0.73

  Alignments for each domain:
  == domain 1    score: 2.6 bits;  conditional E-value: 0.013
   TIGR03169   3 vLvGgGHahalvLkklamkpkagvrvtlispssttlYSGMlPgliaghysedeiridlrrlaekagaelvedeatgldleerkvll 88 
                 v +G G a   + k +      ++rv ++sp+++ +++ Ml  +  g+ +++ i   +r+  ++  +   e+e +++dl ++ + +
  MMETSP1137-20121227|5429_1 116 VVLGTGWAAHAMVKTI---DTDKYRVLVVSPRNYFMFTPMLAATCVGTVEYRSITEPIRS--SNPLVGYLEGECVAIDLGAQTISV 196
                 6777777766666665...35789********************9999999999888776..444555677777777777776665 PP

  == domain 2    score: 32.5 bits;  conditional E-value: 1e-11
   TIGR03169  93 eisydvlsldvGsttalsevegaadkavpvKPleellaaweellekakas.......eetk...slavvGgGaagvElala.......lrkrlkkrglk.aevsla.seakllqalsakvrklvkrllakrgievlekeevtevedealll....aegetleadavllatgakapawLaesglsld.............edGflavkktLqslshp..evFaaGDcavikeapr 288
                 +++yd l++  G ++++  v g a++   vK +e++ + ++++ ++ +++       ee k   +++ vG+G  gvE  +        + k++  r +  ++v l+ s+++ll+++ + +++ +k++l+krg++v  +++vt v++ + ++    +e+e+l++   ++a g ++ ++ ++   +l+             e+G + v++ L++++ p   v a GD a +++a+ 
  MMETSP1137-20121227|5429_1 222 TLPYDTLVFACGVQSSTFGVPGVAEHCKFVKEIEDAREIRRAVGDAFESAcapgveiEEIKrllTFVTVGAGPTGVEFTGElmdfikeISKKFYPRLAPyTRVVLVqSGPDLLPGFDDLLKASAKKSLEKRGVNVEVNARVTAVTATHATIqrkgQEDEELPCGLCVWAGGTRPRPITESVIKQLGpeaaaatekatrfEKGKIPVDAWLRVVGAPlgTVIAMGDAAFVADAEE 455
                 68999999999999999999999999999999999988877776665443111111122222248899**********9997777666445544444444788888899***********************************9885555455578899*************9988654322221111111112222367999999999999998667999999999876543 PP

>> TIGR01424  gluta_reduc_2: glutathione-disulfide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   0.0     3e-08   3.1e-05     191     302 ..     323     447 ..     314     482 .. 0.80

  Alignments for each domain:
  == domain 1    score: 20.5 bits;  conditional E-value: 3e-08
   TIGR01424 191 kvtllyrgekilrgfdddvraelaeeleerGirillktvlksiekvddGlkvtlskdeeivadvvllatGrvPn......vkglgleaaGvelnda....gaiavdeysrts...vpsiyavGdv 302
                 +v l+  g ++l gfdd ++a+ +++le+rG+++ +++ ++++++++  ++    +dee+ +   + a G  P       +k+lg eaa    + +    g i vd++ r       ++ a+Gd+
  MMETSP1137-20121227|5429_1 323 RVVLVQSGPDLLPGFDDLLKASAKKSLEKRGVNVEVNARVTAVTATHATIQRKGQEDEELPCGLCVWAGGTRPRpitesvIKQLGPEAAAATEKATrfekGKIPVDAWLRVVgapLGTVIAMGDA 447
                 56788889999***********************************************************9885333333577888877655443234448888888877531113456666665 PP

>> TIGR01350  lipoamide_DH: dihydrolipoyl dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.0     9e-08   9.3e-05     194     324 ..     322     470 ..     278     485 .. 0.71

  Alignments for each domain:
  == domain 1    score: 19.1 bits;  conditional E-value: 9e-08
   TIGR01350 194 vkvtvielldrilpaldaevskvlkkklkkkgvkiltnakvtevekeedevvveakkkevetleaekvLvavGrkpn.leelgleklgveld.........ergaikvdeelrtnvpg...iyaiGDvi....gk...lmLAhvAskegvv 324
                 + v +++  + +lp +d  +   +kk+l+k+gv++  na+vt+v+++++++  ++k++e e+l     + a G +p+ ++e  +++lg e           e+g+i+vd+ lr+  +    + a+GD++    ++   ++ A+vA ++g  
  MMETSP1137-20121227|5429_1 322 TRVVLVQSGPDLLPGFDDLLKASAKKSLEKRGVNVEVNARVTAVTATHATI--QRKGQEDEELPCGLCVWAGGTRPRpITESVIKQLGPEAAaatekatrfEKGKIPVDAWLRVVGAPlgtVIAMGDAAfvadAEeplPQTAQVAAQQGAF 470
                 57999*************************************888877665..57788889999999999999998756777788877553211112222245788888777765432233788887642222111224566666666655 PP

>> TIGR03385  CoA_CoA_reduc: CoA-disulfide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0      0.25   2.6e+02     151     182 ..     114     145 ..     109     156 .. 0.81
   2 !   14.0   0.0   3.4e-06    0.0034      97     245 ..     218     395 ..     213     465 .. 0.71

  Alignments for each domain:
  == domain 1    score: -2.0 bits;  conditional E-value: 0.25
   TIGR03385 151 kvvviGgGyiglemvealkergkevtlierse 182
                 +vvv+G+G+ +  mv  + + +  v ++   +
  MMETSP1137-20121227|5429_1 114 RVVVLGTGWAAHAMVKTIDTDKYRVLVVSPRN 145
                 799************99999888887776555 PP

  == domain 2    score: 14.0 bits;  conditional E-value: 3.4e-06
   TIGR03385  97 nekyeesyDkLilstGAkpkileiegieldavftlrnledaeaikkyl............dkkkvekv...vviGgGyiglemvealke....rgke..........vtliersekilnkllDeeiakiveeelekkeielrlneevksvegeekvevltsgkvyq....aDlvilavGvkP 245
                 +++y   yD+L+++ G ++ +  ++g+ ++++  ++++eda +i++ +            + ++++++   v +G+G  g+e    l +      k+          v+l++ +  +  + +D+ +++  +  lek+++++++n +v++v   ++  +++ +++++    + l + a G++P
  MMETSP1137-20121227|5429_1 218 GKSYTLPYDTLVFACGVQSSTFGVPGV-AEHCKFVKEIEDAREIRRAVgdafesacapgvEIEEIKRLltfVTVGAGPTGVEFTGELMDfikeISKKfyprlapytrVVLVQSGPDL-LPGFDDLLKASAKKSLEKRGVNVEVNARVTAVTATHA--TIQRKGQEDeelpCGLCVWAGGTRP 395
                 5789999*******************5.6777789*********9876222211111111334455433336799999999876555431111222122122222226778877777.6889999999999999999999999999999998888..5655555541111345666777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (584 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       112  (0.0273038); expected 82.0 (0.02)
Passed bias filter:                      101  (0.0246221); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.48u 0.13s 00:00:00.61 Elapsed: 00:00:00.42
# Mc/sec: 1835.28
//
Query:       MMETSP1137-20121227|5430_1  [L=394]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.1e-79  265.0  11.3    2.7e-79  264.6   7.8    1.1  1  TIGR00817 tpt: Tpt phosphate/phosphoenolpyruvate translocator
    3.1e-05   21.3  25.9    0.00036   17.9  17.6    2.4  1  TIGR00950 2A78: carboxylate/amino acid/amine transporter
     0.0079   13.7   9.5       0.13    9.7   5.1    3.0  2  TIGR00803 nst: UDP-galactose transporter


Domain annotation for each model (and alignments):
>> TIGR00817  tpt: Tpt phosphate/phosphoenolpyruvate translocator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  264.6   7.8     2e-82   2.7e-79       1     297 [.      92     392 ..      92     393 .. 0.97

  Alignments for each domain:
  == domain 1    score: 264.6 bits;  conditional E-value: 2e-82
   TIGR00817   1 lqtgllfllwyvlnvyFnivnkkllklfhypvlktlvslavgvllellswssilkkrlkiskallklllpvaivhtighvtsnvslskvavSfthtikalepifsvvlskfflgrefpltlylsLlpivlGvalasltelsfnllgflsamisniefvarnifsKkiltkk....sldklnlyalisililfllspiafiveglklltreflqai.skvnvlklvtvslvaalgifHlyqqvafqllervspltysvgNvlKRvvvIvvSilffetkisflqvlGvilaiaGvflYskvkak 297
                 l+tg++f+lwy++n+++ni+nkk l+++++p++++ ++l+vg+ +++  w +++ k++k+s++ +k+l+pv + h   h+ + vsl++ avSfth++ka ep++s++ls+++lg  +   +yl+Llpiv+Gvalasl+elsf +lgf+ am sn++   r i++Kk++       ++++ nly +++il+++ + pi++++e +  + ++   a   ++++  l+ +sl+a   ++ ly+ vaf  l+rv p+t++vgN++KRvv+I +S++ f+t+is+l  +G  +ai+G+ lYs  k+k
  MMETSP1137-20121227|5430_1  92 LTTGSFFALWYLFNIGYNIYNKKALNALPIPYTMAALQLFVGIPYCFTLWLTGIRKAPKLSAENVKTLIPVSLGHLGTHIGAVVSLGAGAVSFTHIVKASEPVVSAALSALLLGAFYSPITYLTLLPIVGGVALASLKELSFTWLGFIAAMGSNLSSALRGILAKKTMGGNsvgeNMSEANLYGVLTILAFIAMVPISLVLEPPAAIMAAISAALdKGLTLGYLWKQSLLAGA-FYYLYNEVAFLALGRVNPVTHAVGNTIKRVVIIIASVIAFKTPISTLGIVGSSIAIFGTLLYSLAKSK 392
                 689******************************************************************************************************************99*************************************************99988889**************************99988877776651569999***********.***************************************************************98875 PP

>> TIGR00950  2A78: carboxylate/amino acid/amine transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9  17.6   2.6e-07   0.00036      43     263 ..     153     383 ..     123     384 .. 0.73

  Alignments for each domain:
  == domain 1    score: 17.9 bits;  conditional E-value: 2.6e-07
   TIGR00950  43 lkrllrllllgalqlgvfyvllflavkkltvaiaalllvlaPlyvtllsdllekervrkkkllAavlalaGivlllsdgnlsislaGlllgllsgisfAlgtvlakrlv..kkeglellqftgfvvlliGall.llpfalllgpnlqalpatslq...wlallyL...gligtllayflynk....glkevdasaasilalleplvallLgllilgetlslvqliggalilaav 263
                  ++++ l+ +++  lg+     +++     v+++ ++ ++ P+ +++ls ll     +  + l ++l ++G v l s ++ls+++ G++++++s++s Al  +lak+ +  +  g +++ ++ ++vl i a++ ++p++l+l+p++  ++a s +   +l+l yL   +l++  + y lyn     +l  v++++ ++ ++++ +v ++ ++++++  +s +  +g ++ +++ 
  MMETSP1137-20121227|5430_1 153 AENVKTLIPVSLGHLGTH-IGAVVSLGAGAVSFTHIVKASEPVVSAALSALLLGAFYSPITYL-TLLPIVGGVALASLKELSFTWLGFIAAMGSNLSSALRGILAKKTMggNSVGENMSEANLYGVLTILAFIaMVPISLVLEPPAAIMAAISAAldkGLTLGYLwkqSLLAG-AFYYLYNEvaflALGRVNPVTHAVGNTIKRVVIIIASVIAFKTPISTLGIVGSSIAIFGT 383
                 444444444444444433.33457778899***********************5555555555.56667776999*******************************99834567789999*******9988762667888888888877776654111678888844334433.3377887644446889**********************9999999999999999888876 PP

>> TIGR00803  nst: UDP-galactose transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.0     0.031        42      86     124 ..     166     204 ..     136     219 .. 0.75
   2 !    9.7   5.1   9.8e-05      0.13      83     222 .]     234     386 ..     212     386 .. 0.60

  Alignments for each domain:
  == domain 1    score: 1.5 bits;  conditional E-value: 0.031
   TIGR00803  86 glsavlsallssglagvyfekilkdkdtsfyvrnlqlpl 124
                  l + ++a++s+g   v f  i k ++ +++++  +l l
  MMETSP1137-20121227|5430_1 166 HLGTHIGAVVSLGAGAVSFTHIVKASEPVVSAALSALLL 204
                 567788899999999999999999999999988877754 PP

  == domain 2    score: 9.7 bits;  conditional E-value: 9.8e-05
   TIGR00803  83 lvvglsavlsallssglagvyfekilkdkdts..fyvrnlq..lplfgllvt........fvvlllsdgslisnkgffigyttavwivvllnvvgglcvglvvkya....dnttksivlalsiilslllsvrlfdaklsltfalgvilvflatllY 222
                  ++g++a++++ lss l+g+  +k ++  +    ++ +nl   l+++ ++ +           + ++  s+  +kg  +gy+ + ++   l+   +++   v ++a     ++t  +   ++ ++++++sv++f+ ++s ++++g  +++++tllY
  MMETSP1137-20121227|5430_1 234 TWLGFIAAMGSNLSSALRGILAKKTMGGNSVGenMSEANLYgvLTILAFIAMvpislvlePPAAIMAAISAALDKGLTLGYLWKQSL---LAGAFYYLYNEVAFLAlgrvNPVTHAVGNTIKRVVIIIASVIAFKTPISTLGIVGSSIAIFGTLLY 386
                 677777777777777777777777776543222234444321133333333355443333223344444555555555555544433...33333333333333331111344888888999*********************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (394 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       167  (0.0407118); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.35u 0.17s 00:00:00.52 Elapsed: 00:00:00.46
# Mc/sec: 1130.52
//
Query:       MMETSP1137-20121227|5431_1  [L=241]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (241 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       130  (0.0316919); expected 82.0 (0.02)
Passed bias filter:                      108  (0.0263286); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.19s 00:00:00.42 Elapsed: 00:00:00.34
# Mc/sec: 935.57
//
Query:       MMETSP1137-20121227|5432_1  [L=192]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (192 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        64  (0.0156021); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.15s 00:00:00.34 Elapsed: 00:00:00.30
# Mc/sec: 844.73
//
Query:       MMETSP1137-20121227|5433_1  [L=441]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (441 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        87  (0.0212092); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.15s 00:00:00.43 Elapsed: 00:00:00.33
# Mc/sec: 1763.85
//
Query:       MMETSP1137-20121227|5434_1  [L=482]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (482 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        84  (0.0204778); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.10s 00:00:00.43 Elapsed: 00:00:00.47
# Mc/sec: 1353.59
//
Query:       MMETSP1137-20121227|5436_1  [L=603]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.6e-24   84.4  41.4    1.1e-23   81.6  28.7    1.9  1  TIGR00797 matE: MATE efflux family protein


Domain annotation for each model (and alignments):
>> TIGR00797  matE: MATE efflux family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.6  28.7   2.8e-27   1.1e-23       3     380 ..     132     536 ..     130     550 .. 0.88

  Alignments for each domain:
  == domain 1    score: 81.6 bits;  conditional E-value: 2.8e-27
   TIGR00797   3 ilaniaqpllslvDtafvGhlg.pveLaavglgslvlmvliiillglltattalvaqavGagnqqrlsrsasqslllalllgllvavvlifaakpllslmg..adeevaelaqeYlrililgipavllslalqgvlrGagdtktpliitvignviniiLdyilifkfglGivGaAlAtvisqylmflllllyilk.........................akkvdlknegllkpdwealkrllklglplllrvilvsflvtllallvarlGstalAahqvalqvesllfmlafGlaiAvsalvGqal..GagdpkrakevarvalklglllglvlaiililfrefiarlftkdpevlelaaillifvaltqpsdalafvldGvlrGagdtkvaaivtvvsawviglpl 380
                 ++  ++ plls +Dta+vG++  +++Laa+g ++ +   +  ++ +++ att l a a ++g   ++ r +  sl++al+lg+++av l +aa+pl+  m    + +   +a +Y  i+ lg+pa l  ++lq ++ + +d++ pl ++ ++  +n   d il+    +G +GaA At+ + ++++++ll++ ++                           kvd++ +++  p+ +   +l +   p++l+ ++ s + +++a+ va+lG+++lAahqv+  +  l + + + +++ v+a++   l  +a   kr++  a+++     ++++  ++ l+++    ++lft++  v ++  ++ ++++++++ ++++  l+G+l +  + + +a++ v+ ++v++  +
  MMETSP1137-20121227|5436_1 132 LAIWLSSPLLSVIDTAVVGKVCsTAQLAALGPSTKMCDNIAYFASAIGAATTNLAADAFASGHPNKAXRIVGGSLTIALGLGFAIAVGLRMAATPLMTTMVgaSSAAAIAPAAQYTAIRALGYPAALTTMVLQAAFLASKDATSPLXALPLVAGANLLGDLILVGPMXMGAAGAAFATIAAXFVNAAVLLVLWKRkvvkgritaaavsaaydpaadpdtvTDKVDRRVRVMTVPSPQEAVTLAAFIAPMMLAIGARSYMGIAMAAAVASLGTVSLAAHQVVECLYWLFSPFGDAVSLSVQAFLPTLLkrSAVVSKRLQGLALRGAAALSVFAGASGAALLVG---APGLFTTSATVSAVLGQVAPLLGVSLVGYVITGALEGALLARRQLRLLAASHVFNTAVLAFGV 536
                 55667899************976899*************************************************************9999998888877644555667899*****************************************************************************9999999999********************999**************************************************************999999************9954411333345555555544443333333333333333...679**************************************************9999987655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (603 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       179  (0.0436373); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.28u 0.28s 00:00:00.56 Elapsed: 00:00:00.63
# Mc/sec: 1263.32
//
Query:       MMETSP1137-20121227|5437_1  [L=735]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0051   13.3   0.0     0.0092   12.5   0.0    1.3  1  TIGR03767 P_acnes_RR: metallophosphoesterase, PPA1498 family


Domain annotation for each model (and alignments):
>> TIGR03767  P_acnes_RR: metallophosphoesterase, PPA1498 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.5   0.0   2.2e-06    0.0092     316     390 ..     254     339 ..     224     347 .. 0.70

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 2.2e-06
   TIGR03767 316 teGslgaeqfkWlkdvlr...dskdtllvlfshhtsk..smenvltdpvaPgek..rvlG....aelvsllseypnvlaWvnGhth 390
                 +e  +++eq++W++++l    + +   l +fsh +     ++ ++ + v  g     + G     ++++l+ ++  v aW  Gh h
  MMETSP1137-20121227|5437_1 254 HEVIIDDEQLRWFEKLLEdhpADEGWKLFVFSHAPPIgsGLRVLQENHVVNGCCwlNHSGgdttRKFIELVRKHRCVKAWFSGHFH 339
                 46679************954433344577899998651145555566666665466555522224789999*************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (735 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        99  (0.0241346); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.20s 00:00:00.63 Elapsed: 00:00:00.57
# Mc/sec: 1672.62
//
Query:       MMETSP1137-20121227|5439_1  [L=645]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.5e-82  273.2   0.2    1.2e-81  272.8   0.1    1.0  1  TIGR03556 photolyase_8HDF: deoxyribodipyrimidine photo-lyase, 8-HDF type
    3.5e-63  211.8   0.0    4.2e-63  211.5   0.0    1.1  1  TIGR02765 crypto_DASH: cryptochrome, DASH family
      1e-49  167.4   3.1      4e-49  165.5   2.2    1.7  1  TIGR02766 crypt_chrom_pln: cryptochrome, plant family
      5e-12   43.7   0.0    9.5e-12   42.8   0.0    1.4  1  TIGR00591 phr2: deoxyribodipyrimidine photolyase


Domain annotation for each model (and alignments):
>> TIGR03556  photolyase_8HDF: deoxyribodipyrimidine photo-lyase, 8-HDF type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  272.8   0.1   1.2e-84   1.2e-81       3     461 ..      36     510 ..      34     519 .. 0.89

  Alignments for each domain:
  == domain 1    score: 272.8 bits;  conditional E-value: 1.2e-84
   TIGR03556   3 ilfwhrrdlrlsdnlglaaarqksakvvglfcldekilkaddiaparvayllgclqelqerykrlgsellilrgdpvqllpklakaleakavywnldvepysrkrdravaaalkekgiavktawdqllhspeeiltk.sgkpytvytpfwknwsskkkaepvetpkeleglteaekeaiaklgvialptakdlgfewdadli.lepgeaaaeakleefvdka..ieeyqeqrnf........paldgtsqlsaalkfgvigirtvwqatlealeasrseearesirtwqqelawrefyqhalysfpeladgpyrekfkefpwenneahfqawcegktgypivdaamrqlnetgwmhnrcrmivasfltk.dliinwqwgekyfmqklidgdlaannggwqwsassgmdpkplrifnpasqaqkfdpeaeyirrwlpelrsldtkdlvtgkitp...lerra....vgypkpivdhkkqq 461
                  lfw r+ lrl dn +l a+ + ++ +  +fcld+  +++  + + r+ +ll +l++l++  + l s+l +lrg p + l    +  + + + ++ d+epy+++rd av +  ++  ++v + +   l + +++l +  gkp t y+ f  n++++  a+p+  +    +l + ++e ++      +p+ak lg++ +++l+ ++ ge+ a +++ee +++a  i+++++ +          p++  t+ ls+ lkfg++++r  ++   +++++   + ++    +   +l wrefy  + +  p+ ++ +     +++ w++ne++f+aw eg+tgyp +daam ql + gw+h   r  va flt+ dl i w++g   f + l+d d a n g w w + s +  + +r + p++  +k+d++++y+r+wlp+l++  +k++     +p   ++r      v+yp  iv h+   
  MMETSP1137-20121227|5439_1  36 TLFWFRKSLRLHDNPALIASLEDCTALYPVFCLDPWFVQSGKVGANRMQFLLESLEDLDRSLRALNSRLXVLRGSPLEQLELAFERWQINQIAYEIDTEPYAKERDAAVCKMAQKTKVKVLRRFGHTLXNVDALLRRaDGKPVTSYSAFLTNFNKEVNANPIVVLDPPAKLPPPKLEDAEDE--HVVPSAKSLGLDLSDSLVvVKGGETHALKRMEEHIARAswIASFEKPKTSptdhdpfgPSTRSTTLLSPYLKFGCLSPRLFYTRVADVYKTH-PKHSQPP-XSLHGQLLWREFYYACAHATPNYDKMAENPICRQIDWDENEEFFEAWREGRTGYPWIDAAMTQLRREGWLHHLARHAVACFLTRgDLWISWEKGAAVFDEYLLDADWAINHGNWMWLSCSCFFYQYFRCYSPVAFPKKYDANGDYVRKWLPQLAKYPAKYIYEPWKAPlseQKRAGcvvgVDYPDRIVVHETIS 510
                 69******************************************************************************9999*********************************************99998765168*********************************999998865..568*********99988625789***********9987669999987765111111235678899***************999988887654.3444433.44556799***************************************************************************879*************************************************************************99875444410034432333367898899887655 PP

>> TIGR02765  crypto_DASH: cryptochrome, DASH family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  211.5   0.0   4.1e-66   4.2e-63       3     430 ..      36     468 ..      34     469 .. 0.90

  Alignments for each domain:
  == domain 1    score: 211.5 bits;  conditional E-value: 4.1e-66
   TIGR02765   3 vlllfrndLRleDnellakasskeeelvpvyvfdarqiklsavaglaklGkarakFlaesvadLktsLkklGsdLlvragkpedvlkelvkelkvravflteeegseeksvekkveealaklkie.eklwgstllheddlpfe.....ledlPdvftqfRkkveaklkvrksleapeklpa..lpksedeganlPtleelveaeseedersslefkGGetsalarvkeyflsks.lksYketRngllgvd.......ystklspwLalGcvsarqihealkr.YekergendstywvifeLlWRdyfrflalkygdklFrleGlrgkkaktkedekilekwkegttgyplvdanmreLaatGymsnRgRqnvasflvk.elgldWryGaewfetlLvDyDvssnwgnWqylaGvgndpRgaRqFnlekqakdYDpdgeyvktWvke 430
                 +l++fr+ LRl+Dn++l    +    l pv+++d+  ++        k+G+ r++Fl+es+ dL++sL++l s+L v++g p + l+   ++ ++++++++  +  + k+ +++v ++ +k+k++  +  g+tl + d l        ++      t+f k+v+a  +   +l+ p+klp+  l+++ede++ +P +++l+ + s+    s + +kGGet+al+r++e++   s ++s+ + + +  + d         t lsp+L +Gc+s+r  + ++   Y ++  + +    +   LlWR++++ +a+   +     e    ++++++e+e+ +e+w+eg+tgyp +da+m +L + G++   +R  va fl++ +l + W  Ga+ f++ L+D D + n+gnW++l          R ++++   k+YD +g+yv++W+++
  MMETSP1137-20121227|5439_1  36 TLFWFRKSLRLHDNPALIASLEDCTALYPVFCLDPWFVQ------SGKVGANRMQFLLESLEDLDRSLRALNSRLXVLRGSPLEQLELAFERWQINQIAYEIDTEPYAKERDAAVCKMAQKTKVKvLRRFGHTLXNVDALLRRadgkpVTSYSAFLTNFNKEVNA--NPIVVLDPPAKLPPpkLEDAEDEHV-VPSAKSLGLDLSD----SLVVVKGGETHALKRMEEHIARASwIASFEKPKTSPTDHDpfgpstrSTTLLSPYLKFGCLSPRLFYTRVADvYKTHPKHSQPPXSLHGQLLWREFYYACAHATPNYDKMAENPICRQIDWDENEEFFEAWREGRTGYPWIDAAMTQLRREGWLHHLARHAVACFLTRgDLWISWEKGAAVFDEYLLDADWAINHGNWMWLSCSCFFYQYFRCYSPVAFPKKYDANGDYVRKWLPQ 468
                 79********************************98777......6799****************************************************9999999999999999999999987667777877777765542344467777778999999988..5667899****98721455777766.*********9999....9999******************99999*999888877765433333245679****************9975399999999********************999998888999999***************************************************879*********************************9999999***********************998 PP

>> TIGR02766  crypt_chrom_pln: cryptochrome, plant family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  165.5   2.2   3.9e-52     4e-49       1     470 [.      35     508 ..      35     518 .. 0.79

  Alignments for each domain:
  == domain 1    score: 165.5 bits;  conditional E-value: 3.9e-52
   TIGR02766   1 ktvvwfrrdlrvednpalaaaareg.evlpvfvwapeeegqfypgrvsrwwlkqslahldqslkslgaklvlkrsedtvaalldvvkstgatklvfnhlydpvslvrdhkvkeklaakgisv.qsfnadllyepwevvdekgkaftsfaaywekc.lelpida.spllppkklvp..vtased.vsacsvddlvleddsekssnallarawspgwsnadklleefiekq.........lleys.knrkkvdsastsllspylhfgevsvrkvfqlvrlkqivwanegnseaeesvelflrsiglreysrylsfnfpfsheksllahlkffpwkvdeekfkawrqgrtgyplvdagmrelwatgwlhdrirvvvssfavk.vlllpwkwgmkyfwdtlldadlesdilgwqyisgslpdgreldrldnpelegakydpegeyvrrwlpelarlptewihhpwdapesvlkaagvelgsnypkpivdlda 470
                 +t+ wfr+ lr++dnpal a+ ++  ++ pvf   p        g     +l +sl++ld+sl++l ++l + r  + ++ l    +     ++ ++   +p +  rd  v ++  ++ + v + f   l      +   +gk+ ts++a+  +   e++ ++ ++l pp kl p  +  +ed     s++ l+l+      s++l++     g + a k +ee i ++             + ++    ++ st+llspyl+fg +s r  +   r+ ++  ++ + s+   s++  l     re+    +   p   + +     +   w+ +ee f awr+grtgyp +da m +l   gwlh+  r  v+ f+ +  l + w+ g   f + lldad   +   w ++s s     ++ r   p    +kyd +g+yvr+wlp+la+ p+++i+ pw+ap s  k ag  +g++yp  iv  ++
  MMETSP1137-20121227|5439_1  35 RTLFWFRKSLRLHDNPALIASLEDCtALYPVFCLDPWFVQSGKVGANRMQFLLESLEDLDRSLRALNSRLXVLRG-SPLEQLELAFERWQINQIAYEIDTEPYAKERDAAVCKMAQKTKVKVlRRFGHTLXNVDALLRRADGKPVTSYSAFLTNFnKEVNANPiVVLDPPAKLPPpkLEDAEDeHVVPSAKSLGLDL-----SDSLVV--VKGGETHALKRMEEHIARAswiasfekpKTSPTdHDPFGPSTRSTTLLSPYLKFGCLSPRLFY--TRVADVYKTHPKHSQPPXSLHGQL---LWREFYYACAHATPNYDKMAENPICRQIDWDENEEFFEAWREGRTGYPWIDAAMTQLRREGWLHHLARHAVACFLTRgDLWISWEKGAAVFDEYLLDADWAINHGNWMWLSCSCFFY-QYFRCYSPVAFPKKYDANGDYVRKWLPQLAKYPAKYIYEPWKAPLSEQKRAGCVVGVDYPDRIVVHET 508
                 6899******************9986788****99965555555666667999*****************99997.5789998899999**********************99999888876367777777777888899*********998764156777776677788888762222333313445666777764.....333332..23444555555555554431100000002222202233445689***************9887..589999999999999999987544...46777655555555555555555678999*********************************************9983599********************************8765.56699999999*************************************************99986554 PP

>> TIGR00591  phr2: deoxyribodipyrimidine photolyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.8   0.0   9.3e-15   9.5e-12      17     316 ..      29     344 ..      12     393 .. 0.70

  Alignments for each domain:
  == domain 1    score: 42.8 bits;  conditional E-value: 9.3e-15
   TIGR00591  17 vkdssegvvywmsrdqrvqdnwaliyaqelalkeklPlavvfclvdkflda...tirhykfllkGlrevakelkeldipfhlllgsakevlpkfveekkaaavvt..Dfsplriikq.wveevakalpkdvplvqvdahnvvPvwaasdkleysartirgkikkllpefltelpkvelkak.....sslktaeavdweealaslkvdrevkevelakpGtkaglevleefiskr..LklfeekrndPn........kdalsnlsPylhfGqlsaqrvalevkrarsaesesvd..efleelivrreLadnfcfynesydslkg 316
                 +  ss   ++w  ++ r++dn ali + e      + l  vfcl + f ++    + +++fll+ l+++++ l++l+ ++ +l+gs+ e+l    e++++ ++    D  p  ++++  v ++a+++  +v +++   h++  v a   + +    t  +   +++++ +++ p v l +      ++l++ae      + +sl +d +++ v + k+G+  +l+ +ee i +   +  fe+ +  P+        + +   lsPyl+fG ls++    +v  + +++++  +    l   +  re      + +++yd+++ 
  MMETSP1137-20121227|5439_1  29 LDASSMRTLFWFRKSLRLHDNPALIASLEDC----TALYPVFCLDPWFVQSgkvGANRMQFLLESLEDLDRSLRALNSRLXVLRGSPLEQLELAFERWQINQIAYeiDTEPYAKERDaAVCKMAQKT--KVKVLRRFGHTLXNVDALLRRADGKPVTSYSAFLTNFNKEVNANPIVVLDPPaklppPKLEDAEDEHVVPSAKSLGLDLSDSLVVV-KGGETHALKRMEEHIARAswIASFEKPKTSPTdhdpfgpsTRSTTLLSPYLKFGCLSPRLFYTRVADVYKTHPKHSQppXSLHGQLLWREFYYACAHATPNYDKMAE 344
                 34445559*****************887654....567889***999987622246899********************************999999999999861144554443331333333333..6777777777777766666555544444444444444444444444433333345557888888888999999*****88877655.*************887543367787777655411111111556678*************999999988888776554226788999999999999999999999864 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (645 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        98  (0.0238908); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.53u 0.15s 00:00:00.68 Elapsed: 00:00:00.57
# Mc/sec: 1467.81
//
Query:       MMETSP1137-20121227|5440_1  [L=345]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0089   13.3   0.0      0.013   12.7   0.0    1.2  1  TIGR02349 DnaJ_bact: chaperone protein DnaJ


Domain annotation for each model (and alignments):
>> TIGR02349  DnaJ_bact: chaperone protein DnaJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.7   0.0   3.1e-06     0.013       4      49 ..     194     240 ..     193     246 .. 0.84

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 3.1e-06
   TIGR02349   4 eiLgvskdAseeeikkAYrklakkyHPDrnkg.ekeaeekfkeineA 49 
                  +L vs  A  + ik ++ + a + HPD+n+g ++ a++ f    +A
  MMETSP1137-20121227|5440_1 194 TVLNVSAMACPAVIKASFINAALQLHPDKNPGcRDLADAEFVAALRA 240
                 69*****************************9655677777666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (345 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        59  (0.0143832); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.24u 0.15s 00:00:00.39 Elapsed: 00:00:00.40
# Mc/sec: 1138.41
//
Query:       MMETSP1137-20121227|5441_1  [L=170]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (170 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        40  (0.00975134); expected 82.0 (0.02)
Passed bias filter:                       36  (0.00877621); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.15s 00:00:00.32 Elapsed: 00:00:00.33
# Mc/sec: 679.94
//
Query:       MMETSP1137-20121227|5442_1  [L=614]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (614 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        61  (0.0148708); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.13s 00:00:00.50 Elapsed: 00:00:00.50
# Mc/sec: 1620.83
//
Query:       MMETSP1137-20121227|5443_1  [L=260]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (260 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        89  (0.0216967); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.17s 00:00:00.41 Elapsed: 00:00:00.30
# Mc/sec: 1143.91
//
Query:       MMETSP1137-20121227|5444_1  [L=155]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (155 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        54  (0.0131643); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.14s 00:00:00.33 Elapsed: 00:00:00.24
# Mc/sec: 852.43
//
Query:       MMETSP1137-20121227|5445_1  [L=188]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (188 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       182  (0.0443686); expected 82.0 (0.02)
Passed bias filter:                      134  (0.032667); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.14s 00:00:00.35 Elapsed: 00:00:00.32
# Mc/sec: 775.44
//
Query:       MMETSP1137-20121227|5446_1  [L=181]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (181 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       161  (0.0392491); expected 82.0 (0.02)
Passed bias filter:                      141  (0.0343735); expected 82.0 (0.02)
Passed Vit filter:                        22  (0.00536324); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.13s 00:00:00.32 Elapsed: 00:00:00.34
# Mc/sec: 702.65
//
Query:       MMETSP1137-20121227|5447_1  [L=545]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.7e-22   76.4   6.9    9.9e-22   75.4   4.8    1.5  1  TIGR00659 TIGR00659: TIGR00659 family protein


Domain annotation for each model (and alignments):
>> TIGR00659  TIGR00659: TIGR00659 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.4   4.8   2.4e-25   9.9e-22       9     215 ..     307     520 ..     301     528 .. 0.80

  Alignments for each domain:
  == domain 1    score: 75.4 bits;  conditional E-value: 2.4e-25
   TIGR00659   9 fltllvffaakklykrfksvllnpll....ltvlvlvalLllvkisYe....sYm.kgaevlndlLqpavvalaiPLYkqlkvikkyakeiiltvvvgsvvailsgtllalllgaapelvasllPksvttpiamevsekigGiPavtavlviltgllGavfgplllkklrvkdkvarGlalGtsshalGtariieldelaGavsslslvLagiits 215
                   tl++f aa++l + f++  + p++    l  l  +a   +v+ ++      Y  +++++++ l+ p+vv++a+ LY+   +++++a +ii   + gs+ +++++++ a+ll + p l+  llP+s tt+i  e+++     Pa+      +tgll   +g+ +l++lrv d + rG+al ++sh+ G++ ++  +++a  ++ l l L++  t+
  MMETSP1137-20121227|5447_1 307 CATLFAFSAANRLPRAFNKA-VHPFVtcavLMQLFCAATAAAVGGTWKgalvAYHaRAGTLISSLMAPTVVSFAFSLYRFRSQLAARAPQIIGVALCGSLSSMIASAIAARLLTLPPALALNLLPRSTTTAIGTELARITNAPPALGLLAAFVTGLLSINLGKPVLRALRVSDPAQRGIALSAASHG-GAVLVLADEPQAFPFAVLMLSLSAAATL 520
                 56888888888887666543.3344300002222222333333323321111444157789*****************************************************************************************************************************9.8888999999998888888888777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (545 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       124  (0.0302292); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.14s 00:00:00.48 Elapsed: 00:00:00.57
# Mc/sec: 1240.24
//
Query:       MMETSP1137-20121227|5448_1  [L=843]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (843 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        79  (0.0192589); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.50u 0.14s 00:00:00.64 Elapsed: 00:00:00.59
# Mc/sec: 1885.88
//
Query:       MMETSP1137-20121227|5449_1  [L=184]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (184 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       101  (0.0246221); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.16s 00:00:00.33 Elapsed: 00:00:00.28
# Mc/sec: 837.45
//
Query:       MMETSP1137-20121227|5450_1  [L=238]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (238 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        41  (0.00999512); expected 82.0 (0.02)
Passed bias filter:                       41  (0.00999512); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.13s 00:00:00.33 Elapsed: 00:00:00.33
# Mc/sec: 951.92
//
Query:       MMETSP1137-20121227|5451_1  [L=705]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (705 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        55  (0.0134081); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.17s 00:00:00.59 Elapsed: 00:00:00.45
# Mc/sec: 2067.83
//
Query:       MMETSP1137-20121227|5452_1  [L=608]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (608 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        46  (0.011214); expected 82.0 (0.02)
Passed bias filter:                       41  (0.00999512); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.15s 00:00:00.55 Elapsed: 00:00:00.71
# Mc/sec: 1130.27
//
Query:       MMETSP1137-20121227|5453_1  [L=368]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.9e-07   27.4   0.1    1.9e-06   26.2   0.1    1.6  1  TIGR02052 MerP: mercuric transport protein periplasmic component
    2.1e-05   22.5   0.0    3.6e-05   21.7   0.0    1.3  1  TIGR00003 TIGR00003: copper ion binding protein


Domain annotation for each model (and alignments):
>> TIGR02052  MerP: mercuric transport protein periplasmic component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.2   0.1   9.3e-10   1.9e-06      18      68 ..     289     339 ..     276     354 .. 0.82

  Alignments for each domain:
  == domain 1    score: 26.2 bits;  conditional E-value: 9.3e-10
   TIGR02052  18 alaatktvtlevPgmtcaacPitvktalkkvdGvekaevsfkqklavvtfd 68 
                 a a+ +++ l v gm c+ac + vk +l  ++Gv  aev+f    a +  d
  MMETSP1137-20121227|5453_1 289 AAATDESLLLRVSGMGCTACSVKVKATLGALPGVRSAEVDFGASSARLQID 339
                 566778899********************************9888777665 PP

>> TIGR00003  TIGR00003: copper ion binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.7   0.0   1.8e-08   3.6e-05       4      52 ..     298     345 ..     296     357 .. 0.90

  Alignments for each domain:
  == domain 1    score: 21.7 bits;  conditional E-value: 1.8e-08
   TIGR00003   4 lqVkgmsCnHCVdkiEkfVGeleGVsavkvdlekekvvVeFdapkvsae 52 
                 l V gm C  C  k+  + G l GV+  +vd  + ++  + da+ + a 
  MMETSP1137-20121227|5453_1 298 LRVSGMGCTACSVKVKATLGALPGVRSAEVDFGASSARLQIDAD-ADAG 345
                 689***************************************99.6654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (368 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        78  (0.0190151); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.28u 0.17s 00:00:00.45 Elapsed: 00:00:00.33
# Mc/sec: 1471.88
//
Query:       MMETSP1137-20121227|5454_1  [L=618]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.1e-20   67.9   1.0    1.4e-09   34.1   0.3    2.0  2  TIGR04121 DEXH_lig_assoc: DEXH box helicase, DNA ligase-associated
      6e-16   56.1   0.1    5.6e-13   46.3   0.0    2.2  2  TIGR00614 recQ_fam: ATP-dependent DNA helicase, RecQ family
    7.4e-16   55.5   0.5    2.6e-13   47.1   0.1    2.3  2  TIGR01389 recQ: ATP-dependent DNA helicase RecQ
      5e-10   36.1   0.0    3.5e-07   26.7   0.0    2.1  2  TIGR03817 DECH_helic: helicase/secretion neighborhood putative DEAH-box helicase
    2.1e-08   31.2   0.0      3e-08   30.6   0.0    1.2  1  TIGR00643 recG: ATP-dependent DNA helicase RecG
    4.1e-06   23.2   0.1    7.2e-06   22.4   0.1    1.3  1  TIGR01970 DEAH_box_HrpB: ATP-dependent helicase HrpB
    1.5e-05   21.4   0.2    0.00059   16.1   0.0    2.1  2  TIGR00580 mfd: transcription-repair coupling factor
    6.6e-05   19.9   0.1       0.12    9.2   0.0    2.1  2  TIGR04095 dnd_restrict_1: DNA phosphorothioation system restriction enzyme
    0.00014   17.3   0.0      0.044    9.1   0.0    2.3  2  TIGR01054 rgy: reverse gyrase
     0.0026   13.9   1.1     0.0067   12.5   0.1    1.9  2  TIGR00631 uvrb: excinuclease ABC subunit B
     0.0041   14.1   0.6       0.46    7.4   0.0    2.2  2  TIGR03158 cas3_cyano: CRISPR-associated helicase Cas3, subtype CYANO


Domain annotation for each model (and alignments):
>> TIGR04121  DEXH_lig_assoc: DEXH box helicase, DNA ligase-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.3   0.0   1.3e-11   4.7e-09       5     152 ..     134     285 ..     130     288 .. 0.84
   2 !   34.1   0.3   3.6e-12   1.4e-09     250     344 ..     399     490 ..     380     503 .. 0.92

  Alignments for each domain:
  == domain 1    score: 32.3 bits;  conditional E-value: 1.3e-11
   TIGR04121   5 awfaargw.eprafQkevleaaeegesglliapTGaGKTlavflpsliela....akekpkkglkvlyitPLkaLakdieraleapieelgleirvelrtGDtssserarqrkkpp..diLltTpEslaLllsskdaeklfkdlravvvDElHeL 152
                 ++f+++g+ +p++ Q + l+   +g++ + ia TG+GKT+   +p l ++     a++++ +g  ++ ++P + La++i++  +a ++ ++++ +v +  G  + ++ +   ++ p  d+++ Tp  l+ l+   d++ ++ ++r +v+DE   +
  MMETSP1137-20121227|5454_1 134 RFFEKKGYvKPTPIQAASLSLSLTGKDVIAIAQTGSGKTMGFLIPLLWDASlnrrAASTKMQGPLAVVLAPTRELAQQIHEEAKALATVFDCR-TVCVFGGQRKYDQEKIIFQHGPklDLVVGTPGRLSELIR--DQTLTMDNIRFLVLDEADRM 285
                 79*****9779**************************************9987654455558888999**************99999888876.57777888887777766666662267999******9995..567789**********8665 PP

  == domain 2    score: 34.1 bits;  conditional E-value: 3.6e-12
   TIGR04121 250 ttlvFtNtRsqaEllfqaLleaneelaleialhHgsldkeqRekveaalkagklravvcTssLdLGvDfgdvdlviqvGspkgvaRllQRiGRsn 344
                  t+vF+N +  a l+ + ++e+      ++   Hg l+++qR++v +++ +gk +++v+T     G+D + v +vi+   p  +   + RiGR++
  MMETSP1137-20121227|5454_1 399 HTVVFVNRKVEAQLVAERMMEMGSV---RVCELHGNLSQNQRDRVRDNILSGKAQVLVATDVAARGLDVKTVRQVINFDMPNDLETYIHRIGRTA 490
                 699**************99998876...78888************************************************************86 PP

>> TIGR00614  recQ_fam: ATP-dependent DNA helicase, RecQ family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.7   0.0   0.00074      0.28       8      49 ..     140     181 ..     135     291 .. 0.77
   2 !   46.3   0.0   1.5e-15   5.6e-13     229     332 ..     400     504 ..     358     535 .. 0.88

  Alignments for each domain:
  == domain 1    score: 7.7 bits;  conditional E-value: 0.00074
   TIGR00614   8 glesfrpvqlevinavlegrdalvvmatGgGksLCyqlpavv 49 
                 g+ +  p q   +   l+g+d++ +  tG Gk + + +p + 
  MMETSP1137-20121227|5454_1 140 GYVKPTPIQAASLSLSLTGKDVIAIAQTGSGKTMGFLIPLLW 181
                 666777899999999*********************999764 PP

  == domain 2    score: 46.3 bits;  conditional E-value: 1.5e-15
   TIGR00614 229 GiiYClsrkkveqvaaeLqkkg.laaaaYhagleesarkevqkkflrdeiqvvvatvafGmGinkpdvRfvihyslpksiesYYqesGRaGRDglksecvlfyap 332
                  +++ + + +++ va+++ + g +     h +l++++r++v+ + l  + qv+vat     G++   vR+vi +++p ++e+Y   +GR  R     +++ f++p
  MMETSP1137-20121227|5454_1 400 TVVFVNRKVEAQLVAERMMEMGsVRVCELHGNLSQNQRDRVRDNILSGKAQVLVATDVAARGLDVKTVRQVINFDMPNDLETYIHRIGRTARGTASGDAITFFNP 504
                 47888999999999*9998876488999****************************9999******************************************987 PP

>> TIGR01389  recQ: ATP-dependent DNA helicase RecQ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.5   0.0    0.0013       0.5      10      51 ..     140     181 ..     134     291 .. 0.82
   2 !   47.1   0.1   7.1e-16   2.6e-13     227     330 ..     400     504 ..     346     525 .. 0.87

  Alignments for each domain:
  == domain 1    score: 6.5 bits;  conditional E-value: 0.0013
   TIGR01389  10 GyeeFRggqeeiieevldgrdvlavlPtGGGkslCYqvPaLl 51 
                 Gy +  + q++ ++  l+g+dv+a+  tG Gk + + +P L 
  MMETSP1137-20121227|5454_1 140 GYVKPTPIQAASLSLSLTGKDVIAIAQTGSGKTMGFLIPLLW 181
                 7777788899999999***********************875 PP

  == domain 2    score: 47.1 bits;  conditional E-value: 7.1e-16
   TIGR01389 227 GiiYassRkkveelaeaLeskg.iealaYhaGlskkvRaeaqekFleddvkvvvatvaFGmGidksdvRfvihldlPknlesyyqeaGRaGRDGlkaeaillyse 330
                  +++ + + + + +ae++ + g + +   h+ ls+++R++ +++ l  +++v+vat     G+d   vR vi +d+P++le+y    GR  R     +ai+++++
  MMETSP1137-20121227|5454_1 400 TVVFVNRKVEAQLVAERMMEMGsVRVCELHGNLSQNQRDRVRDNILSGKAQVLVATDVAARGLDVKTVRQVINFDMPNDLETYIHRIGRTARGTASGDAITFFNP 504
                 577777777888888887766538999***************************************************************************985 PP

>> TIGR03817  DECH_helic: helicase/secretion neighborhood putative DEAH-box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.7   0.0   9.4e-10   3.5e-07      23     167 ..     130     283 ..     116     288 .. 0.79
   2 !    7.3   0.0   0.00068      0.25     273     375 ..     399     494 ..     389     521 .. 0.81

  Alignments for each domain:
  == domain 1    score: 26.7 bits;  conditional E-value: 9.4e-10
   TIGR03817  23 pdvvaaleaaGieapwqhqaraaelahaGehvvvatgtasGkslayllPvlsalaed........pratalylaPtkalaadqlravkelee..rdvraatydGdtpaeerewireka...ryvltnPdmlhlgilpsharWakflralryvvvdech 167
                 ++  + +e++G  +p   qa+   l+ +G++v+  + t sGk++++l+P+l   + +        ++  a+ laPt+ la+      k+l +  +   ++++ G  + ++ + i +++   ++v+  P  l   i  +    +  + ++r++v+de+ 
  MMETSP1137-20121227|5454_1 130 KSALRFFEKKGYVKPTPIQAASLSLSLTGKDVIAIAQTGSGKTMGFLIPLLWDASLNrraastkmQGPLAVVLAPTRELAQQIHEEAKALATvfDCRTVCVFGGQRKYDQEKIIFQHGpklDLVVGTPGRLSELIRDQ----TLTMDNIRFLVLDEAD 283
                 5566778999****************************************9765555234444444788999*********999999999987555667899999999999999998744457888888876544332....4457788888888875 PP

  == domain 2    score: 7.3 bits;  conditional E-value: 0.00068
   TIGR03817 273 rtltfvrsrrgaevvaleakerlaevdaelaervaayraGylaedrreleralkdGellgvaatnalelGvdisGldavviaGfPGtvaslwqqaGraGrrgq 375
                 +t++fv+ + +a++va +  e         + rv+   +   +++r ++ +++ +G+ + ++at+    G+d+  +  v+    P  + ++  ++Gr+ r + 
  MMETSP1137-20121227|5454_1 399 HTVVFVNRKVEAQLVAERMMEM-------GSVRVCELHGNLSQNQRDRVRDNILSGKAQVLVATDVAARGLDVKTVRQVINFDMPNDLETYIHRIGRTARGTA 494
                 5777777777777766443332.......2358888777777788889*************************************************998654 PP

>> TIGR00643  recG: ATP-dependent DNA helicase RecG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.6   0.0   8.2e-11     3e-08     282     526 ..     194     466 ..     164     510 .. 0.72

  Alignments for each domain:
  == domain 1    score: 30.6 bits;  conditional E-value: 8.2e-11
   TIGR00643 282 esGyqvalmaPTeiLAeQhyeklrelleplgievalLtgslkkkkkkelleeiasG.eielvvGTha....llqek.vefkeLalviiDEQhrF.GveQRkkLrekgkek...........iaphvLvmsAT.PIP.RtlA...ltvygdldvsiidelPlGrkpittklikekek........dkvyevveeeikkgrqvyvvyplieesekl......elkaaealleelkkaf.pklnvallhgrlksdekeevleeFrekevdiLvaTtviEvGvdvPn 526
                  +G  ++++aPT  LA+Q  e+++ l   ++ +   + g ++k +++++  +  +G +++lvvGT      l+ ++    +++++ + DE  r        +Lre +++            ++ ++L++sAT P+  R lA   l+    ++v   del +  k it ++ ++ +k        + v  + e+ i++g            s k+        +++ea l   + +  ++++v  lhg l+++++++v  +  +++ ++LvaT v   G+dv  
  MMETSP1137-20121227|5454_1 194 MQGPLAVVLAPTRELAQQIHEEAKALATVFDCRTVCVFGGQRKYDQEKIIFQ--HGpKLDLVVGTPGrlseLIRDQtLTMDNIRFLVLDEADRMlDMGFEPQLREIADQMpppsesdssdgKTRQTLMFSATwPVEvRKLArdfLSNAVRINVGGTDELVANSK-ITQSVQFHRSKesrlsaihQXVSDMEERMINEGFGNA-------RSSKIchtvvfVNRKVEAQLVAERMMEmGSVRVCELHGNLSQNQRDRVRDNILSGKAQVLVATDVAARGLDVKT 466
                 4678899***********************9998888887777766666543..3338*******76222256554247889999*******9634556679999998889999******99**********88855***9888888899*********77655.5555555555513454444333333334444432222.......22222233333334444444443333338999999**********************************99965 PP

>> TIGR01970  DEAH_box_HrpB: ATP-dependent helicase HrpB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.4   0.1   1.9e-08   7.2e-06     213     288 ..     400     472 ..     364     486 .. 0.81

  Alignments for each domain:
  == domain 1    score: 22.4 bits;  conditional E-value: 1.9e-08
   TIGR01970 213 vLvfLPGqaeirrveeaLaerldasevelcPLyGeleleaqdraikpaaaGrrkvvLatniaetsltieGvrvviD 288
                  +vf+  + e + v+e +    +  +v++c L+G+l+ +++dr+ +   +G+ +v +at++a   l ++ vr vi+
  MMETSP1137-20121227|5454_1 400 TVVFVNRKVEAQLVAERMM---EMGSVRVCELHGNLSQNQRDRVRDNILSGKAQVLVATDVAARGLDVKTVRQVIN 472
                 5666666666666666665...3358***********************************************996 PP

>> TIGR00580  mfd: transcription-repair coupling factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.0     0.011       4.3     496     582 ..     194     284 ..     186     286 .. 0.76
   2 !   16.1   0.0   1.6e-06   0.00059     663     733 ..     403     471 ..     368     478 .. 0.84

  Alignments for each domain:
  == domain 1    score: 3.3 bits;  conditional E-value: 0.011
   TIGR00580 496 ldgkQvavlvPTTlLaeQHfetlkeRfknfpvkiellsrfrkakekkeilkelaeG.kidiliGT....hkllq.kdvkfkdlgLliiDEEqr 582
                 ++g   +vl+PT  La+Q +e+ k+    f  +   +   +++ ++++i+ +  +G k+d+++GT     +l++ + +++ ++  l++DE  r
  MMETSP1137-20121227|5454_1 194 MQGPLAVVLAPTRELAQQIHEEAKALATVFDCRTVCVFGGQRKYDQEKIIFQ--HGpKLDLVVGTpgrlSELIRdQTLTMDNIRFLVLDEADR 284
                 4566689***********************9987777777777777777754..4449*******4333344541456889999999999876 PP

  == domain 2    score: 16.1 bits;  conditional E-value: 1.6e-06
   TIGR00580 663 yvhnriesieklkeqlrelvPeariaiaHgqmeeeeleevmleFlkkefdvLvcTtiiEsGidipnaNTii 733
                 +v+ ++e  + ++e++ e+  ++r++  Hg++++++ ++v  + l+++++vLv+T +   G+d+ ++  +i
  MMETSP1137-20121227|5454_1 403 FVNRKVEA-QLVAERMMEM-GSVRVCELHGNLSQNQRDRVRDNILSGKAQVLVATDVAARGLDVKTVRQVI 471
                 55555654.3444444444.689*****************************************9887665 PP

>> TIGR04095  dnd_restrict_1: DNA phosphorothioation system restriction enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.7   0.0   0.00044      0.16      24      91 ..     157     237 ..     142     284 .. 0.77
   2 !    9.2   0.0   0.00031      0.12     313     384 ..     422     493 ..     365     529 .. 0.86

  Alignments for each domain:
  == domain 1    score: 8.7 bits;  conditional E-value: 0.00044
   TIGR04095  24 ngrGilkma.tGtGktltaLalvskl........aekikslvvvvvvPykhLveqWakeaek....FglepilayesvsrW 91 
                  g+ ++++a tG+Gkt+  L+             + k++  + vv++P ++L++q  +ea++    F+ + +  +++++++
  MMETSP1137-20121227|5454_1 157 TGKDVIAIAqTGSGKTMGFLIPLLWDaslnrraaSTKMQGPLAVVLAPTRELAQQIHEEAKAlatvFDCRTVCVFGGQRKY 237
                 57778888769******9886432111235566666667778899**************9863333666666666666665 PP

  == domain 2    score: 9.2 bits;  conditional E-value: 0.00031
   TIGR04095 313 glrvktftaeeskeeReellkqfesgelqalvairCLDeGvDvPairtayiLasssnPrqFiqRRGRvLRks 384
                  +rv +   + s+++R++++ ++ sg+ q+lva      G+Dv ++r+ +     ++   +i R GR  R +
  MMETSP1137-20121227|5454_1 422 SVRVCELHGNLSQNQRDRVRDNILSGKAQVLVATDVAARGLDVKTVRQVINFDMPNDLETYIHRIGRTARGT 493
                 56666667778999**********************************999999999999****99998865 PP

>> TIGR01054  rgy: reverse gyrase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.1   0.0   0.00012     0.044      62     213 ..     125     286 ..     117     289 .. 0.71
   2 !    5.6   0.0    0.0013      0.48     144     187 ..     418     456 ..     389     475 .. 0.72

  Alignments for each domain:
  == domain 1    score: 9.1 bits;  conditional E-value: 0.00012
   TIGR01054  62 ieeelkefeeffkkavGsellsiqkmWakrvlknksFaivaPtGvGktt.fgl..v..mslf.....lakkgkrvyiilPttlLvkqvaeklsslaekeglnirvvayhsklstkekkevkeriengdfdilittsaflsknleklk...ykFdlvfvDDvDalL 213
                 ie+  k+  +ff+k+  +++  iq       l +k   ++a tG Gkt+ f +  +  +sl       +++g  + ++ Pt+ L++q+ e  + la   ++ +++v + ++ ++ + k + ++  +   d++++t   ls  ++  +    + +++++D+ D +L
  MMETSP1137-20121227|5454_1 125 IEKLPKSALRFFEKKGYVKPTPIQAASLSLSLTGKDVIAIAQTGSGKTMgFLIplLwdASLNrraasTKMQGPLAVVLAPTRELAQQIHEEAKALATVFDCRTVCV-FGGQRKYDQEKIIFQHGPK--LDLVVGTPGRLSELIRDQTltmDNIRFLVLDEADRML 286
                 6777788999****9889*******999999999*************97333211111222211110334455678899******************999998555.5555555555555554444..8999999888877665433224577888888888777 PP

  == domain 2    score: 5.6 bits;  conditional E-value: 0.0013
   TIGR01054 144 sslaekeglnirvvayhsklstkekkevkeriengdfdilitts 187
                  ++      ++rv  +h++ls++++  v+++i +g +++l++t 
  MMETSP1137-20121227|5454_1 418 MEM-----GSVRVCELHGNLSQNQRDRVRDNILSGKAQVLVATD 456
                 222.....24668889**************************96 PP

>> TIGR00631  uvrb: excinuclease ABC subunit B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.0      0.17        62      27      77 ..     156     219 ..     140     222 .. 0.57
   2 !   12.5   0.1   1.8e-05    0.0067     453     553 ..     407     504 ..     370     519 .. 0.80

  Alignments for each domain:
  == domain 1    score: -0.6 bits;  conditional E-value: 0.17
   TIGR00631  27 agekeqvLlGvtGsGktfti.......anvi.....akvqkP.tlvlahnktLaaqLyeelkel 77 
                    k+++ +  tGsGkt+         a++       k+q P ++vla+ + La q+ ee k+l
  MMETSP1137-20121227|5454_1 156 LTGKDVIAIAQTGSGKTMGFlipllwdASLNrraasTKMQGPlAVVLAPTRELAQQIHEEAKAL 219
                 5556666677777777754311222221111111113455555688899999999999998876 PP

  == domain 2    score: 12.5 bits;  conditional E-value: 1.8e-05
   TIGR00631 453 kkmaedltdylkelg.ikvkylhseidtlerveiirdLrkgefdvlvGinLLreGlDlPevslvailDadkeGflrsersLiqtiGraarn.veGkvilyadk 553
                 k  a+ +++ + e+g ++v  lh ++   +r ++ +++  g+ +vlv  ++   GlD+  v  v  +D        + ++ i  iGr ar  ++G +i + + 
  MMETSP1137-20121227|5454_1 407 KVEAQLVAERMMEMGsVRVCELHGNLSQNQRDRVRDNILSGKAQVLVATDVAARGLDVKTVRQVINFDM-----PNDLETYIHRIGRTARGtASGDAITFFNP 504
                 33344456777777559**********************************************999984.....6678999*********6267988887665 PP

>> TIGR03158  cas3_cyano: CRISPR-associated helicase Cas3, subtype CYANO
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.4   0.0    0.0012      0.46      17      68 ..     161     225 ..     149     239 .. 0.83
   2 !    4.8   0.2    0.0073       2.7     274     355 ..     399     488 ..     348     490 .. 0.76

  Alignments for each domain:
  == domain 1    score: 7.4 bits;  conditional E-value: 0.0012
   TIGR03158  17 llntAptGaGKtlaalvevlseeldt.............ialyPtNaLiedqekaikelvdvlkp 68 
                 ++  A tG+GKt   l+++l +                 + l Pt +L+++ ++++k l  v++ 
  MMETSP1137-20121227|5454_1 161 VIAIAQTGSGKTMGFLIPLLWDASLNrraastkmqgplaVVLAPTRELAQQIHEEAKALATVFDC 225
                 56789************99876532234556799999888889*************999988875 PP

  == domain 2    score: 4.8 bits;  conditional E-value: 0.0073
   TIGR03158 274 rgaiildslaevkrlsellreqelglqvgritGlakkkekeral......sfdillgtsavdvGvdFktd.fli.Fsa.sdaaeFlqRlGR 355
                 ++++ ++   e + + e + e + + +v++  G   +++++r        ++++l++t     G+d kt  ++i F+  +d  +++ R+GR
  MMETSP1137-20121227|5454_1 399 HTVVFVNRKVEAQLVAERMMEMG-SVRVCELHGNLSQNQRDRVRdnilsgKAQVLVATDVAARGLDVKTVrQVInFDMpNDLETYIHRIGR 488
                 56677777777777777666444.559******99999999854222333789999999999999999876665476437999*******9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (618 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       159  (0.0387616); expected 82.0 (0.02)
Passed bias filter:                      116  (0.0282789); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                        11  (0.00268162); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.65u 0.20s 00:00:00.85 Elapsed: 00:00:01.01
# Mc/sec: 807.62
//
Query:       MMETSP1137-20121227|5455_1  [L=474]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.4e-10   37.3   0.0    3.4e-10   36.9   0.0    1.1  1  TIGR02938 nifL_nitrog: nitrogen fixation negative regulator NifL
    9.6e-07   26.8   0.0      2e-06   25.8   0.0    1.4  1  TIGR00229 sensory_box: PAS domain S-box protein


Domain annotation for each model (and alignments):
>> TIGR02938  nifL_nitrog: nitrogen fixation negative regulator NifL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.9   0.0   1.6e-13   3.4e-10      25     111 ..      31     117 ..       7     121 .. 0.95

  Alignments for each domain:
  == domain 1    score: 36.9 bits;  conditional E-value: 1.6e-13
   TIGR02938  25 nilyanaafseitGyakeeviGknesvlsnrttPpevyqalwgslaekkPwaGkllnrrkdgelylaeltvaPvlneaGetthflGm 111
                  i+++n+ + +  Gy  eev+G    vl    t +     l ++l  k+ +a +lln  k g+ ++  l v+P++n+ G+ th+lG+
  MMETSP1137-20121227|5455_1  31 RIVHVNDLWCQTCGYDAEEVLGLTCKVLQGVGTCRATLSMLRQALLLKRNFAVQLLNYTKRGRPFMNTLQVTPLVNAEGHVTHYLGV 117
                 699**********************************************************************************96 PP

>> TIGR00229  sensory_box: PAS domain S-box protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.8   0.0   9.8e-10     2e-06      18     113 ..      23     118 ..       9     119 .. 0.90

  Alignments for each domain:
  == domain 1    score: 25.8 bits;  conditional E-value: 9.8e-10
   TIGR00229  18 iivvdeeGnilyvNrafeeifGYsaeeliGrnvlelipeedreevrerierrlegerepvseerrvkrkdGseiwvevsvspird.aggelgvvgiv 113
                 i+  +e  +i++vN+ +++  GY aee++G +   l       ++  +++++l  +r+   +  ++ +k+G+ +   + v+p+ + +g +++++g++
  MMETSP1137-20121227|5455_1  23 ICEPNEPFRIVHVNDLWCQTCGYDAEEVLGLTCKVLQGVGTCRATLSMLRQALLLKRNFAVQLLNY-TKRGRPFMNTLQVTPLVNaEGHVTHYLGVI 118
                 555567789**************************999999999999****999556999999999.**************************9998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (474 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        79  (0.0192589); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.32u 0.16s 00:00:00.48 Elapsed: 00:00:00.44
# Mc/sec: 1421.88
//
Query:       MMETSP1137-20121227|5456_1  [L=539]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (539 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        87  (0.0212092); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.16s 00:00:00.60 Elapsed: 00:00:00.48
# Mc/sec: 1482.13
//
Query:       MMETSP1137-20121227|5457_1  [L=325]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (325 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        83  (0.020234); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.17s 00:00:00.40 Elapsed: 00:00:00.34
# Mc/sec: 1261.66
//
Query:       MMETSP1137-20121227|5458_1  [L=103]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (103 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       177  (0.0431497); expected 82.0 (0.02)
Passed bias filter:                      125  (0.0304729); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.14s 00:00:00.28 Elapsed: 00:00:00.28
# Mc/sec: 485.53
//
Query:       MMETSP1137-20121227|5459_1  [L=198]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.8e-33  111.4   0.0    9.2e-33  111.2   0.0    1.0  1  TIGR00231 small_GTP: small GTP-binding protein domain
    4.7e-08   30.3   0.0    1.3e-07   28.8   0.0    1.6  1  TIGR03594 GTPase_EngA: ribosome-associated GTPase EngA
    9.1e-05   18.8   0.0     0.0001   18.7   0.0    1.0  1  TIGR01393 lepA: GTP-binding protein LepA
     0.0019   15.7   0.1      0.003   15.1   0.0    1.3  1  TIGR03598 GTPase_YsxC: ribosome biogenesis GTP-binding protein YsxC
     0.0026   15.1   0.1       0.17    9.2   0.0    2.2  2  TIGR00073 hypB: hydrogenase accessory protein HypB
      0.005   13.9   0.0      0.031   11.3   0.0    1.8  2  TIGR03597 GTPase_YqeH: ribosome biogenesis GTPase YqeH
     0.0064   14.6   0.4        0.2    9.7   0.0    2.2  2  TIGR02528 EutP: ethanolamine utilization protein, EutP
  ------ inclusion threshold ------
      0.028   11.8   0.0          2    5.7   0.0    2.1  2  TIGR00157 TIGR00157: ribosome small subunit-dependent GTPase A
      0.028   11.4   0.2       0.45    7.4   0.0    2.2  2  TIGR00750 lao: LAO/AO transport system ATPase


Domain annotation for each model (and alignments):
>> TIGR00231  small_GTP: small GTP-binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  111.2   0.0     2e-35   9.2e-33       3     162 ..       5     166 ..       3     168 .. 0.96

  Alignments for each domain:
  == domain 1    score: 111.2 bits;  conditional E-value: 2e-35
   TIGR00231   3 eikivivGhvdvGKstLlnsllknkisiteskpgvtrdyvteqieedGktykvnllDTaGqedfdairrlyvreverslevvdivilvldveeglekqtkeiiheakkkgvpiilvvnKiDlkd......dlktkvkslfaklnaepiielsaetgknidklfklv 162
                 + k+v++G+++vGK++L +++l+n+ + + + ++++ +++++++e  G ++ + ++DTaGqe+fd +++ y r + + + ++d++++ +++e++ +k+ k++ +ea+ +g  i lv++KiDl +      ++++++ + +a+   + ++e+sa++g+++ ++f+ +
  MMETSP1137-20121227|5459_1   5 DLKLVLLGQPGVGKTCLVYRYLYNT-FGETI-STIGASFAMKKVEASGRPCNLGIWDTAGQERFDSLSSFYCRGARAAIICFDLTNR-SSFESVQKKWIKKVLDEAE-QGCHICLVGTKIDLIQaqqasrAVSKEEVEALAQQHHAHVFETSARAGTGVADIFQCI 166
                 579**********************.76666.9******************************************************.*******************.********************9999******************************9976 PP

>> TIGR03594  GTPase_EngA: ribosome-associated GTPase EngA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.8   0.0   2.9e-10   1.3e-07     175     349 ..       5     173 ..       1     181 [. 0.74

  Alignments for each domain:
  == domain 1    score: 28.8 bits;  conditional E-value: 2.9e-10
   TIGR03594 175 pikiaiiGrpNvGKStLvNallgeervivsdiaGtTrDsidievevkgkkylliDTAGirrkkkveekveklsvlrtlkaieradvvllvlDategiseqDlk.iaglileegka..lvivvNKwDlvkdekeleelkkeleeklkflkfapivfiSAltgkgveklleaikevyesl 349
                  +k+ ++G+p vGK  Lv + l ++   + ++ G      ++e + +  ++ + DTAG  r  +++     +    +     ra ++++ l  ++++++  +k i +++ e++++  + +v  K+Dl++ ++  ++++ke  e l++ ++a+++ +SA+ g+gv ++++ i e+++s 
  MMETSP1137-20121227|5459_1   5 DLKLVLLGQPGVGKTCLVYRYLYNTFGETISTIGASFAMKKVEASGRPCNLGIWDTAGQERFDSLS----SFYCRGA-----RAAIICFDLTNRSSFESVQKKwIKKVLDEAEQGchICLVGTKIDLIQAQQASRAVSKEEVEALAQQHHAHVFETSARAGTGVADIFQCIVETFHSR 173
                 4799999***********999998888888888888888888888888889999***966544433....3333332.....33444444444555555555515556655555411677889*****8888888899988999***************************9998775 PP

>> TIGR01393  lepA: GTP-binding protein LepA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.0   2.2e-07    0.0001      70     192 ..      53     183 ..      31     189 .. 0.72

  Alignments for each domain:
  == domain 1    score: 18.7 bits;  conditional E-value: 2.2e-07
   TIGR01393  70 yvlnlidtPGhvdfsyevsrslaaceGalllvdaaq.....GveaqtlanvylalekdleiiPvinkidlPsadver...vkkeieeviGldaeeailvsaktGigieelleaivkkvpaPkgdkeaplka 192
                  +l + dt G   f    s     +  a++  d +       v+ + + +v    e+  +i  v  kidl +a+  +    k+e+e +   +++++   sa++G+g+ ++++ iv+   + + d+e + + 
  MMETSP1137-20121227|5459_1  53 CNLGIWDTAGQERFDSLSSFYCRGARAAIICFDLTNrssfeSVQKKWIKKVLDEAEQGCHICLVGTKIDLIQAQQASravSKEEVEALAQQHHAHVFETSARAGTGVADIFQCIVETFHSRAADTEGRHRG 183
                 5566666666666666656555666666666665531111156666777777778999999999******998865422157788888888999999*******************999988888876665 PP

>> TIGR03598  GTPase_YsxC: ribosome biogenesis GTP-binding protein YsxC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   6.6e-06     0.003     127     184 ..     108     165 ..      77     167 .. 0.82

  Alignments for each domain:
  == domain 1    score: 15.1 bits;  conditional E-value: 6.6e-06
   TIGR03598 127 eakipvlvvltKaDklkkselkkalkkvkkelkkeeekvevllfSslkkegieelkae 184
                 e+++++ +v tK+D ++ +++++a++k + e+  ++++++v+ +S++ ++g++++ + 
  MMETSP1137-20121227|5459_1 108 EQGCHICLVGTKIDLIQAQQASRAVSKEEVEALAQQHHAHVFETSARAGTGVADIFQC 165
                 45788999**************99999888877777889*************998765 PP

>> TIGR00073  hypB: hydrogenase accessory protein HypB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.0      0.02       9.1      33      53 ..       8      28 ..       2      42 .. 0.83
   2 !    9.2   0.0   0.00037      0.17     160     212 ..     114     168 ..     106     172 .. 0.81

  Alignments for each domain:
  == domain 1    score: 3.5 bits;  conditional E-value: 0.02
   TIGR00073 33 lnllssiGsGktlllekliea 53
                l ll+ +G Gkt l+ + + +
  MMETSP1137-20121227|5459_1  8 LVLLGQPGVGKTCLVYRYLYN 28
                6689**********9887755 PP

  == domain 2    score: 9.2 bits;  conditional E-value: 0.00037
   TIGR00073 160 lilinkvdlveavdadvekvkadvkki..nPeveiilvsaktgegldelleflee 212
                 +++ +k+dl++a +a     k++v  +  + +++++++sa+ g g+ ++++ + e
  MMETSP1137-20121227|5459_1 114 CLVGTKIDLIQAQQASRAVSKEEVEALaqQHHAHVFETSARAGTGVADIFQCIVE 168
                 67779******9999877777777766215689***************9998765 PP

>> TIGR03597  GTPase_YqeH: ribosome biogenesis GTPase YqeH
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.0      0.14        62     157     214 ..       7      62 ..       2      92 .. 0.67
   2 !   11.3   0.0   6.8e-05     0.031      84     152 ..     103     169 ..      92     176 .. 0.76

  Alignments for each domain:
  == domain 1    score: 0.4 bits;  conditional E-value: 0.14
   TIGR03597 157 dvyvvGvtNVGKSsliNkllklnkgkkkvittSkfpgTTldlieipldkesvllDtpG 214
                 + +++G+  VGK  l+ + l ++ g++      +f    ++    p   +  + Dt+G
  MMETSP1137-20121227|5459_1   7 KLVLLGQPGVGKTCLVYRYLYNTFGETISTIGASFAMKKVEASGRPC--NLGIWDTAG 62 
                 5678999*********9999666555542222334444444444444..455566665 PP

  == domain 2    score: 11.3 bits;  conditional E-value: 6.8e-05
   TIGR03597  84 elkrfvkenkvllvvNKidllpksvklekikewlkkeakeeglkpvdillvsakkkkglkellelikka 152
                  l ++ +  ++ lv+ Kidl+  ++ ++ +++   + ++++    + ++ +sa  ++g+ ++++ i ++
  MMETSP1137-20121227|5459_1 103 VLDEAEQGCHICLVGTKIDLIQAQQASRAVSKEEVEALAQQHH--AHVFETSARAGTGVADIFQCIVET 169
                 35666778899**********9999999987655555554443..36****************998665 PP

>> TIGR02528  EutP: ethanolamine utilization protein, EutP
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.0     0.041        19       2      18 ..       7      23 ..       6      46 .. 0.90
   2 !    9.7   0.0   0.00044       0.2      91     139 ..     112     165 ..      77     168 .. 0.76

  Alignments for each domain:
  == domain 1    score: 3.3 bits;  conditional E-value: 0.041
   TIGR02528  2 rimliGsvgcGkttLtq 18
                +++l+G+ g Gkt L+ 
  MMETSP1137-20121227|5459_1  7 KLVLLGQPGVGKTCLVY 23
                799***********975 PP

  == domain 2    score: 9.7 bits;  conditional E-value: 0.00044
   TIGR02528  91 viglv.tkidlaeadkeierak....elLeeagaekiFeissvdekgleelvdy 139
                  i lv tkidl +a+++   +     e L +    ++Fe+s+   +g+ ++++ 
  MMETSP1137-20121227|5459_1 112 HICLVgTKIDLIQAQQASRAVSkeevEALAQQHHAHVFETSARAGTGVADIFQC 165
                 5666669****9877665444311124567777889************999876 PP

>> TIGR00157  TIGR00157: ribosome small subunit-dependent GTPase A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   0.0     0.013         6     126     141 ..       9      24 ..       4      43 .. 0.82
   2 ?    5.7   0.0    0.0044         2      56     120 ..      98     166 ..      80     176 .. 0.77

  Alignments for each domain:
  == domain 1    score: 4.1 bits;  conditional E-value: 0.013
   TIGR00157 126 vfaGqSGVGKSSLiNl 141
                 v+ Gq GVGK  L+ +
  MMETSP1137-20121227|5459_1   9 VLLGQPGVGKTCLVYR 24 
                 789*********9965 PP

  == domain 2    score: 5.7 bits;  conditional E-value: 0.0044
   TIGR00157  56 alldrlLvvaeakniepiivlnkkdlleeedae....keqleelknl.gYkvllvsvkneegleelkekl 120
                   ++++L  ae ++ ++ +v +k+dl++ ++a     ke +e l++    +v+ +s++   g++++++ +
  MMETSP1137-20121227|5459_1  98 KWIKKVLDEAE-QGCHICLVGTKIDLIQAQQASravsKEEVEALAQQhHAHVFETSARAGTGVADIFQCI 166
                 55666665554.688999999*********9987777777777765504568899999999999988765 PP

>> TIGR00750  lao: LAO/AO transport system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.0     0.045        21      39      54 ..      10      25 ..       5      40 .. 0.82
   2 ?    7.4   0.0   0.00098      0.45     198     245 ..     131     180 ..      88     185 .. 0.78

  Alignments for each domain:
  == domain 1    score: 1.9 bits;  conditional E-value: 0.045
   TIGR00750 39 ltGvPGaGkstlvekl 54
                l G PG+Gk  lv + 
  MMETSP1137-20121227|5459_1 10 LLGQPGVGKTCLVYRY 25
                679********99775 PP

  == domain 2    score: 7.4 bits;  conditional E-value: 0.00098
   TIGR00750 198 sldleelferekgWrPkvlktsavegrGikelvdaiee..hkkvlkksGk 245
                 ++ +ee+    ++ + +v +tsa  g G++++ + i e  h +++   G+
  MMETSP1137-20121227|5459_1 131 AVSKEEVEALAQQHHAHVFETSARAGTGVADIFQCIVEtfHSRAADTEGR 180
                 44555666667788999******************988334455555565 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (198 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       279  (0.0680156); expected 82.0 (0.02)
Passed bias filter:                      226  (0.0550951); expected 82.0 (0.02)
Passed Vit filter:                        41  (0.00999512); expected 4.1 (0.001)
Passed Fwd filter:                         9  (0.00219405); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.31u 0.20s 00:00:00.51 Elapsed: 00:00:00.52
# Mc/sec: 502.57
//
Query:       MMETSP1137-20121227|5460_1  [L=388]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (388 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       129  (0.0314481); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.15s 00:00:00.43 Elapsed: 00:00:00.35
# Mc/sec: 1463.19
//
Query:       MMETSP1137-20121227|5461_1  [L=276]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (276 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        54  (0.0131643); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.15s 00:00:00.36 Elapsed: 00:00:00.43
# Mc/sec: 847.19
//
Query:       MMETSP1137-20121227|5462_1  [L=538]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (538 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       118  (0.0287665); expected 82.0 (0.02)
Passed bias filter:                      102  (0.0248659); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.14s 00:00:00.51 Elapsed: 00:00:00.51
# Mc/sec: 1392.36
//
Query:       MMETSP1137-20121227|5463_1  [L=587]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (587 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        60  (0.014627); expected 82.0 (0.02)
Passed bias filter:                       44  (0.0107265); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.16s 00:00:00.52 Elapsed: 00:00:00.35
# Mc/sec: 2213.65
//
Query:       MMETSP1137-20121227|5464_1  [L=245]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (245 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        81  (0.0197465); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.18s 00:00:00.40 Elapsed: 00:00:00.37
# Mc/sec: 873.98
//
Query:       MMETSP1137-20121227|5465_1  [L=298]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.3e-30  102.7   0.1    3.9e-30  102.0   0.0    1.4  1  TIGR00049 TIGR00049: iron-sulfur cluster assembly accessory protein
    4.9e-22   76.0   0.0    7.9e-22   75.3   0.0    1.3  1  TIGR01997 sufA_proteo: FeS assembly scaffold SufA
    2.2e-18   64.3   0.0    3.4e-18   63.7   0.0    1.3  1  TIGR02011 IscA: iron-sulfur cluster assembly protein IscA
    4.5e-05   21.1   0.0      7e-05   20.5   0.0    1.3  1  TIGR03341 YhgI_GntY: IscR-regulated protein YhgI


Domain annotation for each model (and alignments):
>> TIGR00049  TIGR00049: iron-sulfur cluster assembly accessory protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.0   0.0   3.8e-33   3.9e-30       1     105 [.     160     269 ..     160     270 .. 0.93

  Alignments for each domain:
  == domain 1    score: 102.0 bits;  conditional E-value: 3.8e-33
   TIGR00049   1 itltdkaakkikelleeekee..nkglrvgvkegGCsGlkyklelee..ekeedDevvekdgvkvvvdskslellegleidyveellgsgFkfs.NPnakssCgCgkSFs 105
                 i++t+++a+++k l ++++e+  + +lr++v++gGCsG++y++++ +  e eedD+v+e++g+kvvvd+ sl+ll+g+++d+ ++++++ F+++ NP a s CgCg+SF 
  MMETSP1137-20121227|5465_1 160 ISITQRCAERVKWLNRQRAEDspARCLRISVEPGGCSGFQYNFSILNlnELEEDDRVFESHGAKVVVDECSLTLLRGATVDFEDDMMRTAFVIAkNPVADSACGCGSSFX 269
                 789***********99998876689******************9975226788***************************************988**************6 PP

>> TIGR01997  sufA_proteo: FeS assembly scaffold SufA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.3   0.0   7.7e-25   7.9e-22       3     105 ..     160     268 ..     158     270 .. 0.89

  Alignments for each domain:
  == domain 1    score: 75.3 bits;  conditional E-value: 7.7e-25
   TIGR01997   3 leltdaaatrvrelvkkree...avgirlsvkktGcaGleyalelv..sepkeddvllekdGakvfvapeallflkGtevdfvkktlrqglkf.nnPnatsacGcGesv 105
                 +++t+  a rv+ l ++r e   a  +r+sv  +Gc+G++y+  ++  +e +edd ++e +Gakv+v+  +l++l+G++vdf+ + +r+ ++  +nP a sacGcG s+
  MMETSP1137-20121227|5465_1 160 ISITQRCAERVKWLNRQRAEdspARCLRISVEPGGCSGFQYNFSILnlNELEEDDRVFESHGAKVVVDECSLTLLRGATVDFEDDMMRTAFVIaKNPVADSACGCGSSF 268
                 8999**********9999652335789**************99986226899*************************************887648*************9 PP

>> TIGR02011  IscA: iron-sulfur cluster assembly protein IscA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.7   0.0   3.3e-21   3.4e-18       1     104 [.     160     269 ..     160     270 .. 0.85

  Alignments for each domain:
  == domain 1    score: 63.7 bits;  conditional E-value: 3.3e-21
   TIGR02011   1 itlteaaakrvnsflanrgk...glglrlgvktsgcsgmayvlefv..deaddddlvfedkgvkividakslvyldgiqldfvkeglnegfkf.enpnvkdecgcgesfh 104
                 i++t+ +a+rv+    +r        lr+ v+  gcsg+ y++ ++  +e+++dd vfe++g+k+v+d  sl  l g  +df  + ++  f + +np +   cgcg sf 
  MMETSP1137-20121227|5465_1 160 ISITQRCAERVKWLNRQRAEdspARCLRISVEPGGCSGFQYNFSILnlNELEEDDRVFESHGAKVVVDECSLTLLRGATVDFEDDMMRTAFVIaKNPVADSACGCGSSFX 269
                 567888888887665555541116789**************9987522799****************************************8737999999*******95 PP

>> TIGR03341  YhgI_GntY: IscR-regulated protein YhgI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   0.0   6.8e-08     7e-05      16      90 ..     178     252 ..     160     272 .. 0.80

  Alignments for each domain:
  == domain 1    score: 20.5 bits;  conditional E-value: 6.8e-08
   TIGR03341  16 ekqeegikirvfvvnPGtpkaecgvayckpdeveeediklefdefsayvdaksvpfledaeidfvtdklGgqltl 90 
                 ++ ++  ++r+ v+  G +  +   +  + +e ee+d  +e ++ +++vd+ s++ l+ a++df+ d + + +++
  MMETSP1137-20121227|5465_1 178 AEDSPARCLRISVEPGGCSGFQYNFSILNLNELEEDDRVFESHGAKVVVDECSLTLLRGATVDFEDDMMRTAFVI 252
                 33334567899999999999999**********************************************988765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (298 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       123  (0.0299854); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.24u 0.13s 00:00:00.37 Elapsed: 00:00:00.43
# Mc/sec: 914.72
//
Query:       MMETSP1137-20121227|5466_1  [L=175]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (175 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       195  (0.0475378); expected 82.0 (0.02)
Passed bias filter:                       96  (0.0234032); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.15s 00:00:00.32 Elapsed: 00:00:00.51
# Mc/sec: 452.90
//
Query:       MMETSP1137-20121227|5467_1  [L=468]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (468 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       102  (0.0248659); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.16s 00:00:00.48 Elapsed: 00:00:00.49
# Mc/sec: 1260.63
//
Query:       MMETSP1137-20121227|5468_1  [L=231]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (231 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       107  (0.0260848); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.18s 00:00:00.40 Elapsed: 00:00:00.43
# Mc/sec: 709.06
//
Query:       MMETSP1137-20121227|5469_1  [L=276]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (276 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        72  (0.0175524); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.12s 00:00:00.34 Elapsed: 00:00:00.35
# Mc/sec: 1040.83
//
Query:       MMETSP1137-20121227|5470_1  [L=75]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (75 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       127  (0.0309605); expected 82.0 (0.02)
Passed bias filter:                      110  (0.0268162); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.13s 00:00:00.27 Elapsed: 00:00:00.28
# Mc/sec: 353.54
//
Query:       MMETSP1137-20121227|5471_1  [L=629]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (629 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       274  (0.0667967); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.17s 00:00:00.62 Elapsed: 00:00:00.53
# Mc/sec: 1566.44
//
Query:       MMETSP1137-20121227|5472_1  [L=609]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.3e-24   84.8   0.0    9.5e-24   82.0   0.0    2.2  2  TIGR00577 fpg: formamidopyrimidine-DNA glycosylase


Domain annotation for each model (and alignments):
>> TIGR00577  fpg: formamidopyrimidine-DNA glycosylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.0   0.0   2.3e-27   9.5e-24      45     276 .]      60     285 ..      23     285 .. 0.79
   2 ?   -3.4   0.0      0.25     1e+03     184     204 ..     302     322 ..     301     336 .. 0.74

  Alignments for each domain:
  == domain 1    score: 82.0 bits;  conditional E-value: 2.3e-27
   TIGR00577  45 kellgktilsikRrgKyLlleldkgvv...alvihlrmegklrleekkeae.kekhvkvelllddGkeLryaDkRkFgtllllekteveeslllakLgpeplseeftaealfeklkkkkrkiktlLLDqklvsGiGNiyadEvLfaakihPerlassLskeeiellhkaikevLekAieaggttikdfvqskgengefqqelkvyGkkgepcrkCgttiekekvagrgthfcpkcq 276
                 ++++g+++  i+  gK+L++ +  + +   ++ +h +m+g+  ++ + +a+ +++ ++++  l +G+ L      +  ++ +     +  + ++akLg +pl ++ + e+l e++ +++++i  lL+Dq++ +G+GNiy  E+Lf a+ihPe + ssLs+ e  ++  a  + ++++ + g   +   v++++     + +l  y  +   c +Cg  +++  ++gr  + c +cq
  MMETSP1137-20121227|5472_1  60 AAINGRRFSRIEAVGKNLFAFFAVAGSpdvVVHVHFGMSGRWSVADAARAKePTATSRLR--L-EGHGLV----AQLSAMTVDYGGPELFAEKVAKLGSDPLRADADPEKLWERVSASQKSIGSLLMDQAYFAGVGNIYRAEILFVAGIHPEVKGSSLSRAEFDRVWAASVSLMRRGFASGS-ILT--VDPAEAVALGKPNLRRYIYNSARCGRCGGAVRSWNMHGRTCYVCAACQ 285
                 567888888888888888877776655665777888888888887776653233333333..3.344443....344444444444444445789**********************************************************************************98764.444..4566666666666666777899*************************9 PP

  == domain 2    score: -3.4 bits;  conditional E-value: 0.25
   TIGR00577 184 LfaakihPerlassLskeeie 204
                 Lf +   P+ la++L++ +  
  MMETSP1137-20121227|5472_1 302 LFTSHCAPDSLAERLKEPQKL 322
                 899999999999999987643 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (609 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        72  (0.0175524); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.17s 00:00:00.59 Elapsed: 00:00:00.43
# Mc/sec: 1869.33
//
Query:       MMETSP1137-20121227|5473_1  [L=165]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (165 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        82  (0.0199902); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.19s 00:00:00.36 Elapsed: 00:00:00.37
# Mc/sec: 588.60
//
Query:       MMETSP1137-20121227|5474_1  [L=170]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.6e-35  120.0   0.0    1.7e-35  119.9   0.0    1.1  1  TIGR02540 gpx7: putative glutathione peroxidase Gpx7


Domain annotation for each model (and alignments):
>> TIGR02540  gpx7: putative glutathione peroxidase Gpx7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  119.9   0.0   4.2e-39   1.7e-35       3     123 ..      13     139 ..      11     167 .. 0.86

  Alignments for each domain:
  == domain 1    score: 119.9 bits;  conditional E-value: 4.2e-39
   TIGR02540   3 ysfevkdikgrl.vslekyrgkvslvvnvaseceftdknyralqelqrelgpshfnvlafpcnqfgesepksskeiesfarknygvtfpifskikilgseaepafrflvdsskk......eprwnfwk 123
                 y+  ++d+  ++ v l+ky+gkvslvvnva +  +td+ny++lq lq +l p+ f+vlafpcnqfg +ep+   +i sf+   ygvtfp+f ki + g++++p ++fl +  +       + +wnf k
  MMETSP1137-20121227|5474_1  13 YALSAHDLDSNApVNLDKYNGKVSLVVNVAXQGAMTDSNYKQLQALQEKLEPQGFTVLAFPCNQFGGQEPGDAAKIRSFVD-GYGVTFPMFAKIDVNGPNTHPVYKFLKKEKREfmgltsDIKWNFAK 139
                 555566665543399****************************************************************95.8*************************88654311111145777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (170 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        88  (0.0214529); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.17u 0.14s 00:00:00.31 Elapsed: 00:00:00.30
# Mc/sec: 747.94
//
Query:       MMETSP1137-20121227|5475_1  [L=85]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (85 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        36  (0.00877621); expected 82.0 (0.02)
Passed bias filter:                       36  (0.00877621); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.15s 00:00:00.27 Elapsed: 00:00:00.26
# Mc/sec: 431.50
//
Query:       MMETSP1137-20121227|5476_1  [L=399]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.3e-36  122.0   4.9    8.9e-36  121.7   3.4    1.1  1  TIGR03989 Rxyl_3153: oxidoreductase, Rxyl_3153 family
    1.8e-27   94.1   6.9    7.7e-27   92.0   4.8    1.9  1  TIGR02822 adh_fam_2: zinc-binding alcohol dehydrogenase family protein
    7.9e-26   88.5   2.8      1e-25   88.2   1.9    1.1  1  TIGR03451 mycoS_dep_FDH: mycothiol-dependent formaldehyde dehydrogenase
    7.8e-23   78.9   4.7    1.3e-22   78.2   3.3    1.3  1  TIGR02818 adh_III_F_hyde: S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase
    1.5e-20   71.4   6.6    3.8e-20   70.0   4.1    1.8  1  TIGR00692 tdh: L-threonine 3-dehydrogenase
    2.7e-20   70.6   2.3    3.8e-20   70.1   1.6    1.1  1  TIGR03366 HpnZ_proposed: putative phosphonate catabolism associated alcohol dehydrogenase
    2.4e-17   60.7   1.3    9.4e-11   39.1   0.3    2.1  2  TIGR02824 quinone_pig3: putative NAD(P)H quinone oxidoreductase, PIG3 family
    2.8e-16   57.4   4.1      6e-16   56.3   2.6    1.7  2  TIGR03201 dearomat_had: 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase
    6.9e-13   45.9   1.9    6.1e-06   23.1   1.2    2.6  2  TIGR02823 oxido_YhdH: putative quinone oxidoreductase, YhdH/YhfP family
    2.5e-11   40.8   3.4    1.2e-10   38.6   2.0    2.1  2  TIGR01751 crot-CoA-red: crotonyl-CoA reductase
    2.5e-09   34.8   0.0    0.00055   17.3   0.0    2.2  2  TIGR02817 adh_fam_1: zinc-binding alcohol dehydrogenase family protein
    6.7e-08   29.3  10.5    4.4e-07   26.6   7.3    1.9  1  TIGR02819 fdhA_non_GSH: formaldehyde dehydrogenase, glutathione-independent
    1.3e-05   22.3   0.1       0.01   12.8   0.0    2.2  2  TIGR01202 bchC: chlorophyll synthesis pathway protein BchC
      0.002   15.3   0.1     0.0032   14.6   0.0    1.2  1  TIGR02853 spore_dpaA: dipicolinic acid synthetase, A subunit
  ------ inclusion threshold ------
      0.028   11.5   0.1       0.05   10.7   0.0    1.5  2  TIGR01161 purK: phosphoribosylaminoimidazole carboxylase, ATPase subunit


Domain annotation for each model (and alignments):
>> TIGR03989  Rxyl_3153: oxidoreductase, Rxyl_3153 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  121.7   3.4   3.3e-38   8.9e-36      27     244 ..      22     237 ..      13     313 .. 0.88

  Alignments for each domain:
  == domain 1    score: 121.7 bits;  conditional E-value: 3.3e-38
   TIGR03989  27 gevkvklaasGlChsdehlvtGdlpl.....ekyPvvgGheGaGvvekvGpgvtelkeGdhv.vlsfipaCGrCrlCakGlqnlCdlGaallaGkqlsdgtyrlhaadgedvgqmcllgtfseytvveeasvvkidkdipldkaalvgCgvttGfGsavkaadvkaGdtvvvvGiGGvGinavqGaavaGarkvvavdpvefkrekalklGathav.asieeale 244
                  +v+++++ +G+Chsd   +  ++ +      k+P v+Ghe aGvv++vGp+vt+++ Gdh+ v  f+ +C +C++C++G++n+C + ++ +aGk       r ++   ++ gq  l g fs+  +v+e+  vk+ k+ pl+ a  + Cg  t f +  k+ +vkaG tv +vG+GG+G+  ++ a++ Ga kv a+     k e a k Ga   v +s ee+++
  MMETSP1137-20121227|5476_1  22 RDVQLEVHYCGVCHSDVLAARNEMDFimgekVKFPCVPGHEIAGVVTEVGPEVTKFAVGDHIgVGWFVDTCRTCKSCTSGNENFCSKMTTTVAGKPS----ERATM-PPNESGQ--LAGGFSNLFTVDERYAVKVPKSYPLEYAGPIMCGGITVF-TPLKKYGVKAGTTVGIVGVGGLGVMGIKLAKALGA-KVTAISRGTSKEEFARKCGAESYVaTSSEESMK 237
                 5799999*********99999888766677668****************************96667***************************9987....45555.4445565..569*******************************99988.5788999***************************9.599*****************9888344555554 PP

>> TIGR02822  adh_fam_2: zinc-binding alcohol dehydrogenase family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.0   4.8   2.8e-29   7.7e-27      27     215 ..      21     229 ..       7     336 .. 0.85

  Alignments for each domain:
  == domain 1    score: 92.0 bits;  conditional E-value: 2.8e-29
   TIGR02822  27 egellvrvracgvcrtdlhvsegdlp.vhrerv....ipghevvgevveagaaegefavgdrvgiawlrrtcgvcrycrrgaenlcpasryt..gw.............dadggyaeyttvpaafayrlptgyadeelapllcagiigyrallraelpeggrlglygfggsahltaqvalaqgaevhvltrgaaarklalalgaasaqg 215
                   ++ + v+ cgvc +d+  +  ++  +  e+v    +pghe+ g+v e+g +  +favgd +g+ w+  tc +c+ c  g en+c +   t  g              +  gg+++  tv   +a ++p  y  e   p++c gi  +  l +  +  g  +g+ g gg   +  ++a a ga+v  ++rg++ +++a + ga s   
  MMETSP1137-20121227|5476_1  21 ARDVQLEVHYCGVCHSDVLAARNEMDfIMGEKVkfpcVPGHEIAGVVTEVGPEVTKFAVGDHIGVGWFVDTCRTCKSCTSGNENFCSKMTTTvaGKpseratmppnesgQLAGGFSNLFTVDERYAVKVPKSYPLEYAGPIMCGGITVFTPLKKYGVKAGTTVGIVGVGGLGVMGIKLAKALGAKVTAISRGTSKEEFARKCGAESYVA 229
                 5567789**********998766654223333323338************************************************875544222211111111211113469******************************************************************************************987543 PP

>> TIGR03451  mycoS_dep_FDH: mycothiol-dependent formaldehyde dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.2   1.9   3.7e-28     1e-25      25     255 ..      20     252 ..      16     317 .. 0.80

  Alignments for each domain:
  == domain 1    score: 88.2 bits;  conditional E-value: 3.7e-28
   TIGR03451  25 gpgevvvkiqacgvchtdlayregg...i...sdefpfllgheaagvveavgegvtdvepgdyvvlnwra.vcgecrackrgrpkycfd..thnaekkmtledgtelsaalgigafaektlvaagqctkvdpaadpavagllgcgvmaglgaavntgevkrgdsvavigvggvgeaaiagaalagakkiiavdiddkklerarelgathtvnsseedvveaireltggfgadvvidavgr 255
                 g+ +v  +++ cgvch+d+     +   i   + +fp + ghe agvv +vg++vt+ ++gd++ + w   +c +c++c  g+ ++c +  t  a k+   +   + ++    g f +   v +  ++kv  +   + ag + cg ++ + + +    vk g +v ++gvgg+g   i  a+  ga k+ a+     k e ar+ ga   v +s+e+ ++a          d++i++v r
  MMETSP1137-20121227|5476_1  20 GARDVQLEVHYCGVCHSDVLAARNEmdfImgeKVKFPCVPGHEIAGVVTEVGPEVTKFAVGDHIGVGWFVdTCRTCKSCTSGNENFCSKmtTTVAGKPSERATMPPNESGQLAGGFSNLFTVDERYAVKVPKSYPLEYAGPIMCGGITVF-TPLKKYGVKAGTTVGIVGVGGLGVMGIKLAKALGA-KVTAISRGTSKEEFARKCGAESYVATSSEESMKAAAG-----TLDLIINTVPR 252
                 8899**************65433331123222457********************************97538***************752156677776666666677777789*******************************99877.5688899***********************99998.79**********************9998877665332.....24566666655 PP

>> TIGR02818  adh_III_F_hyde: S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.2   3.3   4.8e-25   1.3e-22      27     237 ..      22     230 ..      10     247 .. 0.84

  Alignments for each domain:
  == domain 1    score: 78.2 bits;  conditional E-value: 4.8e-25
   TIGR02818  27 gevlvrivatgvchtdaftlsga.d...pegv.fpvilghegagiveavgegvtslkvgdhv.iplytaecgeckfcksgktnlcvavretqgkglmpdgtsrfskdgqpiyhymgtstfseytvvaeislakinkeaalekvcllgcgvttgigavlntakveegatvavfglggiglsviqgaklakasriiaidineakfelakklgatdlvnp 237
                  +v +++   gvch+d+ +   + d    e v fp++ ghe ag+v +vg  vt+++vgdh+ +  +   c  ck c sg+ n+c+++  t        +t      gq       +  fs+   v e   +k+ k+ +le    + cg  t +   l+   v+ g+tv + g+gg+g+  i+ ak  + +++ ai    +k e+a+k ga  +v  
  MMETSP1137-20121227|5476_1  22 RDVQLEVHYCGVCHSDVLAARNEmDfimGEKVkFPCVPGHEIAGVVTEVGPEVTKFAVGDHIgVGWFVDTCRTCKSCTSGNENFCSKMTTTVAGKPSERATMPPNESGQL------AGGFSNLFTVDERYAVKVPKSYPLEYAGPIMCGGITVFTP-LKKYGVKAGTTVGIVGVGGLGVMGIKLAKALG-AKVTAISRGTSKEEFARKCGAESYVAT 230
                 5678889999******99876542333234445****************************9688999*******************99887655556667777777775......4568888889999999************999*98876655.56778****************98888877555.589******************998865 PP

>> TIGR00692  tdh: L-threonine 3-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.0   4.1   1.4e-22   3.8e-20      22     221 ..      20     238 ..      17     246 .. 0.84

  Alignments for each domain:
  == domain 1    score: 70.0 bits;  conditional E-value: 1.4e-22
   TIGR00692  22 gknevlikvkatsicGtdvhi..ynwdewaqkrikvpqvlGhevaGevvgiGeevegvkvGdyvsaethi.vcGkcvacrrGkshvcrn..tkivGv.............dtaGvfaeyvvvpadnifknpkdidpelaaiqeplGnavdtvles..dlaGesvlvsGaGpiGllavavakaaGasqvivsdkneyrlelakkvGatrvvnvakedlvkv 221
                 g  +v + v+ + +c +dv     + d    +++k p v Ghe+aG+v ++G+ev  + vGd++ +   + +c  c++c +G+   c    t++ G              + aG f++   v    + k+pk+ + e+a      G +v t l+     aG +v ++G+G +G++++ +aka Ga+ v ++ +   + e+a+k Ga+  v+   e+ +k 
  MMETSP1137-20121227|5476_1  20 GARDVQLEVHYCGVCHSDVLAarNEMDFIMGEKVKFPCVPGHEIAGVVTEVGPEVTKFAVGDHIGVGWFVdTCRTCKSCTSGNENFCSKmtTTVAGKpseratmppnesgQLAGGFSNLFTVDERYAVKVPKSYPLEYAGPIMCGGITVFTPLKKygVKAGTTVGIVGVGGLGVMGIKLAKALGAK-VTAISRGTSKEEFARKCGAESYVATSSEESMKA 238
                 66799999999*******97622467778899*********************************9998868***************753244445322222222211113468999***********************9999*********8622579************************96.777788899***************999998876 PP

>> TIGR03366  HpnZ_proposed: putative phosphonate catabolism associated alcohol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.1   1.6   1.4e-22   3.8e-20       8     214 ..      24     237 ..      19     274 .. 0.78

  Alignments for each domain:
  == domain 1    score: 70.1 bits;  conditional E-value: 1.4e-22
   TIGR03366   8 vlvrvllatvCGsdlht......vaGrregklpsvlGheavGevvalgseeaaavdgeklavGqRvvwsvavsCgrCerCrrgltqkCeslr..kyGhesla......sgwelsGglaehvvllaGvaivavpddlpdavaapaaCatatvaaaleaagdlegrrvlvlGaGmLGLtaaaaaeerGasrviavDpsaeRrelaaafGaealaeeeelaevr 214
                 v ++v+ + vC sd  +      ++   + k p+v Ghe+ G+v ++g+e+++   g+++ vG    w v  +C +C+ C+ g ++ C+ ++   +G  s +      ++ +l Gg+++   + +    v+vp + p + a p+ C   tv   l++ g  +g++v ++G+G LG+  +  a+++Ga +v+a+   ++++e a + Gae+ +  ++++ ++
  MMETSP1137-20121227|5476_1  24 VQLEVHYCGVCHSDVLAarnemdFIMGEKVKFPCVPGHEIAGVVTEVGPEVTKFAVGDHIGVG----WFV-DTCRTCKSCTSGNENFCSKMTttVAGKPSERatmppnESGQLAGGFSNLFTVDE-RYAVKVPKSYPLEYAGPIMCGGITVFTPLKKYGVKAGTTVGIVGVGGLGVMGIKLAKALGA-KVTAISRGTSKEEFARKCGAESYVATSSEESMK 237
                 5578999******9765112222333456789******************9666666666655....544.68***************8654114566544400111134567888888766655.5678*********************************************************.8*******************9988776655543 PP

>> TIGR02824  quinone_pig3: putative NAD(P)H quinone oxidoreductase, PIG3 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   0.0   1.5e-07   4.2e-05      23      85 ..      17      83 ..       5      86 .. 0.84
   2 !   39.1   0.3   3.4e-13   9.4e-11      91     263 ..     132     298 ..     130     321 .. 0.86

  Alignments for each domain:
  == domain 1    score: 20.5 bits;  conditional E-value: 1.5e-07
   TIGR02824 23 pelkagevlikvaAaGvNrpDvlQraGkYppppgas....eilGLEvaGevvavgeevskfkvGdrv 85
                  ++a++v ++v+  Gv  +Dvl  + + +   g+      ++G E+aG+v++vg ev+kf+vGd++
  MMETSP1137-20121227|5476_1 17 RLTGARDVQLEVHYCGVCHSDVLAARNEMDFIMGEKvkfpCVPGHEIAGVVTEVGPEVTKFAVGDHI 83
                55678899***************9999998887764222269***********************87 PP

  == domain 2    score: 39.1 bits;  conditional E-value: 3.4e-13
   TIGR02824  91 gGgyaeyvvveakqvlpvpeglslveaAalpEtffTvwsnlfelaklkagetvLihggasGiGttaiqlakalgakvlvtagsdekleaaekLGadvainyreedFvevvkeetegkGvdvilDivggsyleknlk.alakdGrlvliallggakaeldlakllakrltltgst 263
                 +Gg+++  +v+++ +++vp+++ l+ a  +    +Tv++ l + + +kag tv i  g +G+G++ i+lakalgakv++  +   k e+a+k Ga+  +   +e   e +k+       d+i+ +v  ++ + +++ +l+ +G  vl++  +   a +  + +   r ++ gs+
  MMETSP1137-20121227|5476_1 132 AGGFSNLFTVDERYAVKVPKSYPLEYAGPIMCGGITVFTPLKKYG-VKAGTTVGIV-GVGGLGVMGIKLAKALGAKVTAISRGTSKEEFARKCGAESYVATSSE---ESMKAAAG--TLDLIINTVPRNHSAFTYEpLLKPKGMQVLVGPHEEMFASIMTMMMWGSRSNVGGSA 298
                 69**************************************98876.89*****997.579************************************99999888...56665544..489999999988888888735677888888888888888777777777777777776 PP

>> TIGR03201  dearomat_had: 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.3   2.6   2.2e-18     6e-16      19     217 ..      17     230 ..       6     245 .. 0.78
   2 ?   -3.7   0.0       3.8     1e+03     302     334 ..     301     334 ..     282     339 .. 0.74

  Alignments for each domain:
  == domain 1    score: 56.3 bits;  conditional E-value: 2.2e-18
   TIGR03201  19 aelgagevvvkvaGcGvchtdldyyydgvr....tnhalplalGheisGrviqagagaasl.vGkavivpa.vipcGecelcksGkGticra............qkmpGndlq...GGfashivvpakglcavdearlkaagleleevsvvadavttpyqaavqaglkkgdlviviGvGGvGgyavqvakalGaavvaidideeklemvkkaGadlilnp 217
                    ga +v ++v  cGvch+d+    + +      + + p   Ghei+G v + g +  ++ vG  + v   v  c +c+ c+sG+ + c +              mp n+ +   GGf+   +v+ ++   v +        +le    +     t +    + g+k g  v ++GvGG+G   +++akalGa v ai     k e  +k Ga+  + +
  MMETSP1137-20121227|5476_1  17 RLTGARDVQLEVHYCGVCHSDVLAARNEMDfimgEKVKFPCVPGHEIAGVVTEVGPEVTKFaVGDHIGVGWfVDTCRTCKSCTSGNENFCSKmtttvagkpserATMPPNESGqlaGGFSNLFTVDERYAVKVPK------SYPLEYAGPIMCGGITVFTPLKKYGVKAGTTVGIVGVGGLGVMGIKLAKALGAKVTAISRGTSKEEFARKCGAESYVAT 230
                 557999***************976655543111145689****************99876549999999862568**************975222222222222469999754455*************999998......456665555555555566667799*************************************************866544 PP

  == domain 2    score: -3.7 bits;  conditional E-value: 3.8
   TIGR03201 302 lyaaaldlv.ldgkidlasfverrpldqieevfa 334
                   aa +dl+ l +k d++s +e   + +++++f 
  MMETSP1137-20121227|5476_1 301 TIAALQDLIdLADKEDIKSEIELVSVTELNKIFG 334
                 4567777766778888888888888888888886 PP

>> TIGR02823  oxido_YhdH: putative quinone oxidoreductase, YhdH/YhfP family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   0.0   1.6e-07   4.4e-05      25      82 ..      20      83 ..       3      93 .. 0.81
   2 !   23.1   1.2   2.2e-08   6.1e-06      93     220 ..     131     250 ..     127     350 .. 0.76

  Alignments for each domain:
  == domain 1    score: 20.3 bits;  conditional E-value: 1.6e-07
   TIGR02823 25 pegdvlikvaysslNyKDalaitgkgkvvr....eyPlvpGiDlaGtvves..edprfkeGdeV 82
                 + dv ++v+y ++ + D la++++   +     ++P+vpG ++aG+v+e   e  +f+ Gd++
  MMETSP1137-20121227|5476_1 20 GARDVQLEVHYCGVCHSDVLAARNEMDFIMgekvKFPCVPGHEIAGVVTEVgpEVTKFAVGDHI 83
                5679********************99987434448*************9863367899999986 PP

  == domain 2    score: 23.1 bits;  conditional E-value: 2.2e-08
   TIGR02823  93 haGGyseyarvkadwvvplPeglslkeamilGtAGfTAaLsvealekagltpeegevlVtGAtGgVgslavalLsklGyevvavtgkkeeeeylkelGakevisreeleeekkkplekerwagavDtv 220
                  aGG+s+   v   ++v++P+   l+ a  +   G T     + l+k g++  +  v + G  Gg g ++++l ++lG +v+a++  +++ee+ ++ Ga+  ++ ++ e+   k+ +  + + ++ tv
  MMETSP1137-20121227|5476_1 131 LAGGFSNLFTVDERYAVKVPKSYPLEYAGPIMCGGITV---FTPLKKYGVKAGT-TVGIVG-VGGLGVMGIKLAKALGAKVTAISRGTSKEEFARKCGAESYVATSSEES--MKA-AAGTLDLIINTV 250
                 68*********************************996...5789999998775.565666.69************************************9988764433..333.344555555555 PP

>> TIGR01751  crot-CoA-red: crotonyl-CoA reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.6   2.0   4.2e-13   1.2e-10      80     245 ..      58     234 ..      19     244 .. 0.74
   2 ?   -3.5   0.0       2.5   6.7e+02     306     349 ..     269     312 ..     262     330 .. 0.58

  Alignments for each domain:
  == domain 1    score: 38.6 bits;  conditional E-value: 4.2e-13
   TIGR01751  80 iiGsdasGvvlrvGegvkrvkvGDevvvsclqvd.eeeeesragDpmlsse..qriwG..........yetn..yGslaefalvedsqllPkPkhLtWeeaacllLtaatayrqLvgkkpaelkpGdavLiWGaaGGLGsyaiqlaraaGgipvavvssedkaeiarelGaeavidrqdfd 245
                 + G + +Gvv++vG++v++++vGD++ v   +++  + + + +g+  ++s+    + G           e+    G+++++  v+++  +  Pk    e a   +  + t +  L   k   +k G +v i G  GGLG++ i+la+a G+   a+     k e+ar+ Gae+++  + ++
  MMETSP1137-20121227|5476_1  58 VPGHEIAGVVTEVGPEVTKFAVGDHIGVGWFVDTcRTCKSCTSGNENFCSKmtTTVAGkpseratmppNESGqlAGGFSNLFTVDERYAVKVPKSYPLEYAGPIMCGGITVFTPL---KKYGVKAGTTVGIVG-VGGLGVMGIKLAKALGAKVTAISRGTSKEEFARKCGAESYVATSSEE 234
                 7799*********************9664433331233334444444443311223331111111111343333699*********************99999988888988777...56789********98.59*******************999***************99876554 PP

  == domain 2    score: -3.5 bits;  conditional E-value: 2.5
   TIGR01751 306 vvicggttGynldlDaryLWmkqkriqGshfanlreasevnrlv 349
                  v++g      + + +  +W ++  + Gs +  +   ++++ l 
  MMETSP1137-20121227|5476_1 269 QVLVGPHEEMFASIMTMMMWGSRSNVGGSAVGTIAALQDLIDLA 312
                 45555544444555555555555556666555555555555555 PP

>> TIGR02817  adh_fam_1: zinc-binding alcohol dehydrogenase family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.0     2e-06   0.00055      27      86 ..      19      83 ..       8      97 .. 0.74
   2 !   15.3   0.0     8e-06    0.0022      95     204 ..     132     233 ..     128     283 .. 0.76

  Alignments for each domain:
  == domain 1    score: 17.3 bits;  conditional E-value: 2e-06
   TIGR02817 27 pkgrdllvevkavsvnPvdtkv.rkkvapea.eelk...ilGwdaaGvvkavGeevtlfkvGdev 86
                ++ rd+ +ev+   v   d+   r+++     e++k   + G+++aGvv++vG+evt f vGd++
  MMETSP1137-20121227|5476_1 19 TGARDVQLEVHYCGVCHSDVLAaRNEMDFIMgEKVKfpcVPGHEIAGVVTEVGPEVTKFAVGDHI 83
                56788888888888888887541555543331333322388**********************86 PP

  == domain 2    score: 15.3 bits;  conditional E-value: 8e-06
   TIGR02817  95 pGsnaefhlvderivgkkPkslsfaeaaalPltaitawellfdrlkieedvagekralliiGaaGGvgsiliqlarqlteltviatasraesqewvkelGahavidhskp 204
                 +G  +++  vder + k Pks   + a  +    it +      lk    + ++ +++ i+G  GG+g + i+la++l  ++v a +  +  +e++++ Ga+  +  s +
  MMETSP1137-20121227|5476_1 132 AGGFSNLFTVDERYAVKVPKSYPLEYAGPIMCGGITVFT----PLKKY--GVKAGTTVGIVG-VGGLGVMGIKLAKALG-AKVTAISRGTSKEEFARKCGAESYVATSSE 233
                 58899999**********************999999754....44433..445666777877.699**********995.566666666666789******987766643 PP

>> TIGR02819  fdhA_non_GSH: formaldehyde dehydrogenase, glutathione-independent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.6   7.3   1.6e-09   4.4e-07      65     220 ..      56     211 ..      12     243 .. 0.72

  Alignments for each domain:
  == domain 1    score: 26.6 bits;  conditional E-value: 1.6e-09
   TIGR02819  65 glvlgheitgevievgrdveflkigdivsvpfni.acgrcrsckekktgvclnvnparagaaygyvdm.....ggwvggqseyvlvpyadfnllkfpdrdqalekirdltmlsdilp...tgyhgavtagvktgstvyiagagpvglaaaasarllgaavvivgd 220
                   v ghei+g v evg +v  + +gd + v + + +c  c+sc   + + c ++  + ag       m     g+  gg s+   v   +   +k+p       k   l     i+    t +      gvk+g+tv i g g +g+   + a+ lga v+ +  
  MMETSP1137-20121227|5476_1  56 PCVPGHEIAGVVTEVGPEVTKFAVGDHIGVGWFVdTCRTCKSCTSGNENFCSKMTTTVAGKPSERATMppnesGQLAGGFSNLFTVD--ERYAVKVP-------KSYPLEYAGPIMCggiTVFTPLKKYGVKAGTTVGIVGVGGLGVMGIKLAKALGAKVTAISR 211
                 4688**************************977747999****************99999887777772222255555555544443..22234444.......4444444455554111557778899*****************************9986643 PP

>> TIGR01202  bchC: chlorophyll synthesis pathway protein BchC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.8   0.0   3.8e-05      0.01      25      86 ..      21      84 ..       8      96 .. 0.78
   2 !    7.5   0.0    0.0016      0.43     146     195 ..     181     234 ..     161     259 .. 0.80

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 3.8e-05
   TIGR01202 25 sedlvveiaysgistGteklllsGllPsfPg..lgyPlvPGyesvGrvveaaddvnf.rvGdrvf 86
                  d+ +e++y g+    + l+   ++    g  + +P vPG+e +G v e +++v +  vGd++ 
  MMETSP1137-20121227|5476_1 21 ARDVQLEVHYCGVCH-SDVLAARNEMDFIMGekVKFPCVPGHEIAGVVTEVGPEVTKfAVGDHIG 84
                567777777777764.5667777777766654478******************987659***985 PP

  == domain 2    score: 7.5 bits;  conditional E-value: 0.0016
   TIGR01202 146 lkdlivGhGalGrllarltvaaGaelpvvwetka....errdiatgyevldPek 195
                 + + ivG G lG +  +l++a Ga+++++    +    +r+ +a++y+    e+
  MMETSP1137-20121227|5476_1 181 TTVGIVGVGGLGVMGIKLAKALGAKVTAISRGTSkeefARKCGAESYVATSSEE 234
                 56779*********************9997543211125778888887766665 PP

>> TIGR02853  spore_dpaA: dipicolinic acid synthetase, A subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.0   1.2e-05    0.0032     152     219 ..     181     252 ..     163     260 .. 0.79

  Alignments for each domain:
  == domain 1    score: 14.6 bits;  conditional E-value: 1.2e-05
   TIGR02853 152 srvlvlGlGrtGktiarllsalgakvsvaar..eskdlaril..elglepvelkeleekvaeiDivintiPa 219
                 + v ++G+G  G    +l +algakv+  +r  ++++ ar +  e  + + + + ++ +    D++int+P 
  MMETSP1137-20121227|5476_1 181 TTVGIVGVGGLGVMGIKLAKALGAKVTAISRgtSKEEFARKCgaESYVATSSEESMKAAAGTLDLIINTVPR 252
                 5667888888888888888999999999888335678899762244555566678999999**********6 PP

>> TIGR01161  purK: phosphoribosylaminoimidazole carboxylase, ATPase subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   0.00018      0.05       1      62 [.     182     244 ..     182     284 .. 0.76
   2 ?   -3.4   0.0       3.4   9.3e+02      50      81 ..     304     334 ..     297     349 .. 0.75

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 0.00018
   TIGR01161   1 tvgilGgGQLgrmlalaakklgikvavle..aeaespakqvadeevlasftdpeaieelaekcd 62 
                 tvgi+G G Lg m ++ ak+lg kv+ ++  +++e++a+++  e  +a+ +++e++++ a + d
  MMETSP1137-20121227|5476_1 182 TVGIVGVGGLGVMGIKLAKALGAKVTAISrgTSKEEFARKCGAESYVAT-SSEESMKAAAGTLD 244
                 79**********************9987622578889999977544443.33355555555555 PP

  == domain 2    score: -3.4 bits;  conditional E-value: 3.4
   TIGR01161  50 dpeaieelaekcdviTleiEhvdeeaLeklea 81 
                   +++ +la+k d+   eiE v ++ L+k+  
  MMETSP1137-20121227|5476_1 304 ALQDLIDLADKEDI-KSEIELVSVTELNKIFG 334
                 45667778888774.67999999999988765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (399 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       188  (0.0458313); expected 82.0 (0.02)
Passed bias filter:                      139  (0.0338859); expected 82.0 (0.02)
Passed Vit filter:                        27  (0.00658216); expected 4.1 (0.001)
Passed Fwd filter:                        15  (0.00365675); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.51u 0.15s 00:00:00.66 Elapsed: 00:00:00.69
# Mc/sec: 763.24
//
Query:       MMETSP1137-20121227|5477_1  [L=183]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (183 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       119  (0.0290102); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.16s 00:00:00.36 Elapsed: 00:00:00.38
# Mc/sec: 635.63
//
Query:       MMETSP1137-20121227|5478_1  [L=296]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (296 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        52  (0.0126767); expected 82.0 (0.02)
Passed bias filter:                       37  (0.00901999); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.13s 00:00:00.35 Elapsed: 00:00:00.35
# Mc/sec: 1116.25
//
Query:       MMETSP1137-20121227|5479_1  [L=551]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   8.3e-174  577.0   1.0   9.5e-174  576.8   0.7    1.0  1  TIGR01327 PGDH: phosphoglycerate dehydrogenase
    0.00086   17.1   0.1     0.0041   14.9   0.0    2.1  2  TIGR00119 acolac_sm: acetolactate synthase, small subunit
     0.0029   15.2   0.0     0.0051   14.4   0.0    1.4  1  TIGR00719 sda_beta: L-serine dehydratase, iron-sulfur-dependent, beta subunit
  ------ inclusion threshold ------
      0.016   12.6   0.0      0.041   11.3   0.0    1.6  2  TIGR00266 TIGR00266: TIGR00266 family protein


Domain annotation for each model (and alignments):
>> TIGR01327  PGDH: phosphoglycerate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  576.8   0.7  9.2e-177  9.5e-174       1     525 []      25     550 ..      25     550 .. 0.99

  Alignments for each domain:
  == domain 1    score: 576.8 bits;  conditional E-value: 9.2e-177
   TIGR01327   1 kvlvadklseegiellkekelevdvktglskeellekikdydalivRSatkvteelleaaekLkvigRaGvGvDNidieaatkkGilvvNaPegntisaaElalalllalaRkipqadksvkekkWerkkflGtElygktlGviGlGriGsevakrakalgmkvlayDPyiseekaeklgvellkdldellaeaDvitvHvPltketkgligkeelakmKkgviivNcaRGGiidEkALvealeegkvraaalDvfekEPpt..dnklleldnvvvtpHlgAsteEaqenvavevaeevlealkgevvesavNlpaldaeeleklkpyldlaeklGklasqllkeavkkvevtleGelaeeeselltsallkgllkevleeevnlvnAkavakergitveeskeeesedyknllevkveadkgevsvagtvleekepriveidgfevdlepegilliiknkDkpGvigkvgsllgeagiNiasmqlgrkekggealmllslDeevseevleeikevpeiksvklvel 525
                 +vl+ad +++   ++l+  +++vd ktgl+++el ++i dyd++ivRSat+v + +leaa+k++ igRaG GvDNid  aat++Gi+v+N+P gntisaaE++  l+ ala ++ qad+s+k++kW+rkk++G+El+gktlGv+GlGr+G ev++r++++gm+v+++DP  + e a+kl +e ++   e +++aD++tvHvPl +et+++i++e+la mK++v+ivNcaRGGiidE+AL +al++g+v++aalDvfe+EPp+  + +l+++++v++tpHlgAsteEaq +va e+a+++++a ++e+v  +vN+p+l+  ++ +lkp++ lae+lG+l  q+l+++v++v+v+l+G + + + +l +++ l g++  v+ e++nl++A+a a+er+i+v+   + e   y+ ll+++ve++k ++ ++g+v++  + r+v+ d+ ++++ p+g+l i k  DkpGv+++v+ llge +iNi s+  +  ++++e + +  + ++v++  l++ +++p++ +v+lv+l
  MMETSP1137-20121227|5479_1  25 RVLIADAIDAVCSDVLTAAGVAVDRKTGLKEAELKAIIGDYDGMIVRSATTVSAGVLEAAKKMHCIGRAGTGVDNIDCAAATRRGIVVINTPGGNTISAAEHTCSLICALANNVAQADASMKAGKWDRKKYVGVELQGKTLGVLGLGRVGREVVSRMQSFGMTVVGFDPLFPAEMARKLNIEPVT-AAEAMRRADFLTVHVPLLEETRNMINAEALASMKPNVRIVNCARGGIIDEEALRHALDNGQVAGAALDVFESEPPNedEWPLIKHPKVIATPHLGASTEEAQAKVAQEIAQSMVNAFAEEPVVGVVNAPNLTLAQMPELKPWVMLAERLGSLCAQVLEGQVRSVSVELTGSVLAPSESLCSASCLVGIFGTVTGEQLNLISAPAFAREREINVSHAFSTEPCAYSALLKLTVETTKATHVLSGSVFGPRQVRVVQFDEHHLEFDPSGYLFIYKSIDKPGVLSRVSGLLGEEDINIGSAVTSTCNSNKEVVNVFAVGKKVEAATLKRAAALPDVANVRLVHL 550
                 79************************************************************************************************************************************************************************************665.778888*********************************************************************966669******************************************************************************************9999999***************************************************************************************************************************************************************9986 PP

>> TIGR00119  acolac_sm: acetolactate synthase, small subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0      0.69   7.1e+02     133     152 ..     238     257 ..     222     258 .. 0.69
   2 !   14.9   0.0     4e-06    0.0041      11      40 ..     485     514 ..     481     545 .. 0.77

  Alignments for each domain:
  == domain 1    score: -2.1 bits;  conditional E-value: 0.69
   TIGR00119 133 aflkllkefgikevarsGlv 152
                 a+ ++  ++ i+++ar G++
  MMETSP1137-20121227|5479_1 238 ALASMKPNVRIVNCARGGII 257
                 44444445669999999986 PP

  == domain 2    score: 14.9 bits;  conditional E-value: 4e-06
   TIGR00119  11 nepGvLsrvsGlfarrgfniesltvgetee 40 
                 ++pGvLsrvsGl+ +   ni s + ++ ++
  MMETSP1137-20121227|5479_1 485 DKPGVLSRVSGLLGEEDINIGSAVTSTCNS 514
                 79*******************987654432 PP

>> TIGR00719  sda_beta: L-serine dehydratase, iron-sulfur-dependent, beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.0     5e-06    0.0051      78     183 ..     408     511 ..     354     534 .. 0.69

  Alignments for each domain:
  == domain 1    score: 14.4 bits;  conditional E-value: 5e-06
   TIGR00719  78 iktaielakakGldiifrvedlvdnvhpnsvkivisdekGeeeeliGisiGGGkikivelnGielelrGeysaillvynekrGviayvasllakseinveslevkk 183
                 + +a  +a+++ +++        +  +    k+++   k     l G+  G  ++++v+++  +le+       + +  +k Gv++ v+ ll + +in++s  +  
  MMETSP1137-20121227|5479_1 408 LISAPAFAREREINVSHAFST-EPCAYSALLKLTVETTKAT-HVLSGSVFGPRQVRVVQFDEHHLEFDPSGYLFIYKSIDKPGVLSRVSGLLGEEDINIGSAVTST 511
                 455555666666666544332.3335567789999999988.8899999******************987777777888*********************976654 PP

>> TIGR00266  TIGR00266: TIGR00266 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0     4e-05     0.041       7      56 ..     215     266 ..     211     276 .. 0.87
   2 ?   -3.9   0.0       1.8   1.8e+03     177     206 ..     358     387 ..     350     391 .. 0.75

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 4e-05
   TIGR00266   7 grpsysvleltLkpgeevlvetgalvsmdrsvelktelkGGlLd..alkrsl 56 
                  r+ + ++++ L  + + +++++al sm+ +v +++  +GG++d  al+++l
  MMETSP1137-20121227|5479_1 215 RRADFLTVHVPLLEETRNMINAEALASMKPNVRIVNCARGGIIDeeALRHAL 266
                 5778889999999999**************************9644677766 PP

  == domain 2    score: -3.9 bits;  conditional E-value: 1.8
   TIGR00266 177 vdglkgdvlsGkGlvaefkGkGkvylqsRs 206
                 ++ l ++vl G+ ++++++ +G v   s s
  MMETSP1137-20121227|5479_1 358 LGSLCAQVLEGQVRSVSVELTGSVLAPSES 387
                 567888899999998888888888766655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (551 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       158  (0.0385178); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.40u 0.16s 00:00:00.56 Elapsed: 00:00:00.49
# Mc/sec: 1484.20
//
Query:       MMETSP1137-20121227|5480_1  [L=439]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.9e-83  277.7   0.0    2.6e-78  261.4   0.0    2.0  2  TIGR00669 asnA: aspartate--ammonia ligase


Domain annotation for each model (and alignments):
>> TIGR00669  asnA: aspartate--ammonia ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.0   1.1e-06    0.0046       8      85 ..      64     145 ..      61     150 .. 0.85
   2 !  261.4   0.0   6.4e-82   2.6e-78      80     324 ..     176     428 ..     169     434 .. 0.93

  Alignments for each domain:
  == domain 1    score: 14.1 bits;  conditional E-value: 1.1e-06
   TIGR00669   8 kqqeisfvkstftqklierlglievqgpilsqvgdgiqdnls..giekavqvk..vkaipdaafevvhslakwkrhtlaryd 85 
                  q+ i ++k+ + + l  +l l  v++p++     g++d l   g    v+    +   p    +vv + +kwkr +l +++
  MMETSP1137-20121227|5480_1  64 TQRAIMMAKQYIEEGLCRELNLFRVECPMILTKDSGMNDYLDrdGSRTPVDFPagLGISPRLEVQVVQAATKWKRWALKQFG 145
                 5999***********************************996226666666531156679999***************9996 PP

  == domain 2    score: 261.4 bits;  conditional E-value: 6.4e-82
   TIGR00669  80 tlarydfkedeglfvhmkalrpdedsldpvrsvyvdqwdwekvvpegernlaylketveaiyaairatevavserf.....glaallpkqivfvhseelvkrypdldskgredaiakelgavfligiggklsdgkphdvrapdyddwttes....elgykglngdilvwnpvlgkafelssmgirvdedalrlqlaltgdedrlelewhqdllngklpqtigggigqsrlamlllqkkhigevqasvwpkevre 324
                 +l +++ + +egl++ m+a+r d  +ld+ +s yvdqwdwekvv+  +rnl ylke v++i++ i+ ++ ++ ++f     +  + +p++++fvh+ee++  y dl  k+re a++ke+ avf++gig +l dg ph++ra dyddw t++     +++ glngdilvwnpv ++  elssmg+rv +++l +ql ++ +   l++ +h+ ++n ++p++igggigqsrl   ll+k  +ge   +vwp+e+++
  MMETSP1137-20121227|5480_1 176 ALKQFGCDVGEGLYTDMRAIRKD-YFLDHDHSSYVDQWDWEKVVTPDQRNLEYLKEVVKRIWKVIKGCDTLLRKEFpalntDKYPPIPDELKFVHAEEILAMYLDLPRKQRETALVKEFSAVFIVGIGAVLKDGYPHEMRAADYDDWITPTvtndGEQFYGLNGDILVWNPVTQRRHELSSMGLRVTKETLVKQLEISQQTHFLQMPYHKMIMNDQIPLSIGGGIGQSRLYGYLLRKAALGECSVGVWPEELHK 428
                 68999****************98.59*************************************************953333334679************************************************************9986222135689*****************************************************************************************99875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (439 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        83  (0.020234); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.32u 0.16s 00:00:00.48 Elapsed: 00:00:00.47
# Mc/sec: 1232.83
//
Query:       MMETSP1137-20121227|5481_1  [L=84]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.3e-34  114.9   5.3    3.6e-34  114.8   3.7    1.0  1  TIGR00280 L37a: ribosomal protein L37a
  ------ inclusion threshold ------
      0.041   12.0   1.4      0.063   11.4   0.1    1.8  2  TIGR04129 CxxH_BA5709: CxxH/CxxC protein, BA_5709 family


Domain annotation for each model (and alignments):
>> TIGR00280  L37a: ribosomal protein L37a
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  114.8   3.7   1.7e-37   3.6e-34       9      90 ..       1      82 [.       1      84 [] 0.98

  Alignments for each domain:
  == domain 1    score: 114.8 bits;  conditional E-value: 1.7e-37
   TIGR00280  9 gitGrfGpryGlkvrravkkieikqkkkykCkvCgkkavkrestgiWkCrkCgakvaGGaytpvtaagktvekairriverk 90
                gitG++G+ryG ++r++vkkiei q+ +y+C++Cgk avkr+  giW C+ C+++ aGGayt  ta ++ v+++irr++e  
  MMETSP1137-20121227|5481_1  1 GITGKYGVRYGASLRKQVKKIEISQHSRYTCSFCGKDAVKRSVVGIWACSACKKVTAGGAYTLHTAQAAQVRSTIRRLREGT 82
                79*****************************************************************************975 PP

>> TIGR04129  CxxH_BA5709: CxxH/CxxC protein, BA_5709 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.1   3.1e-05     0.063      25      46 ..      18      39 ..      17      39 .. 0.88
   2 ?   -1.2   0.1      0.26   5.4e+02      37      43 ..      48      54 ..      47      56 .. 0.82

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 3.1e-05
   TIGR04129 25 lekleeekklskkCeyCeeeAv 46
                ++k+e ++++  +C++C ++Av
  MMETSP1137-20121227|5481_1 18 VKKIEISQHSRYTCSFCGKDAV 39
                6788999999*********996 PP

  == domain 2    score: -1.2 bits;  conditional E-value: 0.26
   TIGR04129 37 kCeyCee 43
                 C+ C++
  MMETSP1137-20121227|5481_1 48 ACSACKK 54
                5999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (84 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       128  (0.0312043); expected 82.0 (0.02)
Passed bias filter:                      111  (0.02706); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.13u 0.15s 00:00:00.28 Elapsed: 00:00:00.27
# Mc/sec: 410.63
//
Query:       MMETSP1137-20121227|5482_1  [L=192]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (192 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        82  (0.0199902); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.15s 00:00:00.32 Elapsed: 00:00:00.32
# Mc/sec: 791.93
//
Query:       MMETSP1137-20121227|5483_1  [L=82]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (82 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        94  (0.0229157); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.27
# Mc/sec: 400.86
//
Query:       MMETSP1137-20121227|5484_1  [L=706]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (706 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       107  (0.0260848); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.14s 00:00:00.56 Elapsed: 00:00:00.56
# Mc/sec: 1664.01
//
Query:       MMETSP1137-20121227|5485_1  [L=320]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.1e-13   47.9   0.1    8.5e-13   46.4   0.0    1.7  2  TIGR01575 rimI: ribosomal-protein-alanine acetyltransferase
    6.5e-06   23.6   0.0    1.1e-05   22.9   0.0    1.4  1  TIGR04045 MSMEG_0567_GNAT: putative N-acetyltransferase, MSMEG_0567 N-terminal domain family
      9e-06   22.3   0.0    1.2e-05   21.9   0.0    1.1  1  TIGR03103 trio_acet_GNAT: GNAT-family acetyltransferase TIGR03103
    2.8e-05   21.4   0.0    0.00013   19.3   0.0    2.0  2  TIGR03448 mycothiol_MshD: mycothiol synthase
     0.0073   14.2   0.0      0.012   13.6   0.0    1.2  1  TIGR03585 PseH: pseudaminic acid biosynthesis N-acetyl transferase


Domain annotation for each model (and alignments):
>> TIGR01575  rimI: ribosomal-protein-alanine acetyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0       1.3     1e+03      70      93 ..     110     133 ..     104     155 .. 0.65
   2 !   46.4   0.0     1e-15   8.5e-13      58     117 ..     179     238 ..     176     242 .. 0.95

  Alignments for each domain:
  == domain 1    score: -2.4 bits;  conditional E-value: 1.3
   TIGR01575  70 qGiGraLlkelikeakergvkeif 93 
                 + + +aLl +l+++  +r+++e  
  MMETSP1137-20121227|5485_1 110 RVLQSALLGDLVQRFSSRNRAEHA 133
                 555667777777777666654433 PP

  == domain 2    score: 46.4 bits;  conditional E-value: 1e-15
   TIGR01575  58 ilniavkpeyqgqGiGraLlkelikeakergvkeifLEVResNvaAqaLYkklgfkeial 117
                 ++++av+++y+++Gi+++L ke +k a + g+ ei L V +sN +Aq+LY+klg++ +a+
  MMETSP1137-20121227|5485_1 179 LSSLAVSKAYRRKGIAKRLCKEAEKAAISWGCDEILLKVENSNRRAQKLYRKLGYRTVAV 238
                 5789****************************************************9987 PP

>> TIGR04045  MSMEG_0567_GNAT: putative N-acetyltransferase, MSMEG_0567 N-terminal domain family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.9   0.0   1.3e-08   1.1e-05      76     139 ..     180     245 ..     129     250 .. 0.84

  Alignments for each domain:
  == domain 1    score: 22.9 bits;  conditional E-value: 1.3e-08
   TIGR04045  76 sRLaveaafRrlgkiGktLirlavstakalGcrrflatvqsqn...vrlfrrlhWesleelelagrp 139
                 s Lav++a+Rr+g i k L + a  +a ++Gc++ l +v + n   ++l+r+l +++++  + a++p
  MMETSP1137-20121227|5485_1 180 SSLAVSKAYRRKG-IAKRLCKEAEKAAISWGCDEILLKVENSNrraQKLYRKLGYRTVAVDTRADKP 245
                 78********987.89************************999333469999999999877777666 PP

>> TIGR03103  trio_acet_GNAT: GNAT-family acetyltransferase TIGR03103
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.9   0.0   1.5e-08   1.2e-05     157     230 ..     178     252 ..     107     264 .. 0.67

  Alignments for each domain:
  == domain 1    score: 21.9 bits;  conditional E-value: 1.5e-08
   TIGR03103 157 slWalavdpqaakpGvGealvralaehfqarglayldlsvlhdneqaialyeklgfrripvfalkrk.nainekl 230
                  l +lav+++ ++ G+ + l +++ +   + g+  + l v   n++a +ly klg+r + v +   k  ai   l
  MMETSP1137-20121227|5485_1 178 LLSSLAVSKAYRRKGIAKRLCKEAEKAAISWGCDEILLKVENSNRRAQKLYRKLGYRTVAVDTRADKpQAIGGTL 252
                 4668*****************************************************998865433315565555 PP

>> TIGR03448  mycothiol_MshD: mycothiol synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.9   0.0    0.0036       2.9      74      99 ..     179     204 ..     113     209 .. 0.86
   2 !   19.3   0.0   1.5e-07   0.00013     234     292 ..     182     240 ..     179     241 .. 0.95

  Alignments for each domain:
  == domain 1    score: 4.9 bits;  conditional E-value: 0.0036
   TIGR03448  74 maElvvhPaaRrrGigkalvrallak 99 
                  + l+v  a+Rr+Gi+k+l +++ ++
  MMETSP1137-20121227|5485_1 179 LSSLAVSKAYRRKGIAKRLCKEAEKA 204
                 56799**************9998765 PP

  == domain 2    score: 19.3 bits;  conditional E-value: 1.5e-07
   TIGR03448 234 vgvdpaaqgrGLGkaLtliGlkhleerglravlLYveadneaAvrtYekLgFtvaevdv 292
                 ++v++a++++G+ k L +   k   + g  ++lL ve+ n++A ++Y+kLg+ ++ vd+
  MMETSP1137-20121227|5485_1 182 LAVSKAYRRKGIAKRLCKEAEKAAISWGCDEILLKVENSNRRAQKLYRKLGYRTVAVDT 240
                 68999*************999999999****************************9996 PP

>> TIGR03585  PseH: pseudaminic acid biosynthesis N-acetyl transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   0.0   1.4e-05     0.012      89     138 ..     190     238 ..     181     246 .. 0.84

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 1.4e-05
   TIGR03585  89 kkgkGsvleealleyafeklklkkLkleVlesNekalklyekfgfelegv 138
                 +kg+ + l +++++ a  + +++++ l+V +sN +a kly k g+  ++v
  MMETSP1137-20121227|5485_1 190 RKGIAKRLCKEAEKAAI-SWGCDEILLKVENSNRRAQKLYRKLGYRTVAV 238
                 46777888888887765.58*************************99875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (320 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       104  (0.0253535); expected 82.0 (0.02)
Passed bias filter:                       98  (0.0238908); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.25u 0.18s 00:00:00.43 Elapsed: 00:00:00.32
# Mc/sec: 1319.89
//
Query:       MMETSP1137-20121227|5486_1  [L=454]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (454 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        76  (0.0185275); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.16s 00:00:00.41 Elapsed: 00:00:00.53
# Mc/sec: 1130.62
//
Query:       MMETSP1137-20121227|5487_1  [L=143]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (143 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        63  (0.0153584); expected 82.0 (0.02)
Passed bias filter:                       33  (0.00804486); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.37
# Mc/sec: 510.12
//
Query:       MMETSP1137-20121227|5488_1  [L=105]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (105 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        74  (0.01804); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.18s 00:00:00.32 Elapsed: 00:00:00.32
# Mc/sec: 433.09
//
Query:       MMETSP1137-20121227|5489_1  [L=468]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   1.2e-135  450.2   2.9   1.4e-135  449.9   2.0    1.0  1  TIGR01242 26Sp45: 26S proteasome subunit P45 family
    3.1e-80  268.3   1.9    2.9e-79  265.0   1.1    1.9  1  TIGR01243 CDC48: AAA family ATPase, CDC48 subfamily
    4.4e-79  264.3   0.2    6.1e-79  263.9   0.1    1.1  1  TIGR01241 FtsH_fam: ATP-dependent metallopeptidase HflB
    1.5e-60  203.2   1.8    1.9e-60  202.9   1.3    1.1  1  TIGR03689 pup_AAA: proteasome ATPase
      1e-07   29.0   0.4    0.00016   18.5   0.0    2.4  2  TIGR02928 TIGR02928: orc1/cdc6 family replication initiation protein
    5.6e-06   23.0   0.0    7.9e-06   22.5   0.0    1.1  1  TIGR03922 T7SS_EccA: type VII secretion AAA-ATPase EccA
    5.9e-06   23.4   0.0    7.2e-05   19.8   0.0    2.3  2  TIGR00635 ruvB: Holliday junction DNA helicase RuvB
    0.00016   18.5   0.2       0.23    8.2   0.0    2.4  2  TIGR00390 hslU: ATP-dependent protease HslVU, ATPase subunit
    0.00036   17.5   0.0    0.00058   16.8   0.0    1.4  1  TIGR02881 spore_V_K: stage V sporulation protein K
    0.00045   16.6   0.4     0.0015   14.9   0.0    1.9  2  TIGR00763 lon: ATP-dependent protease La
    0.00075   16.4   0.0     0.0012   15.8   0.0    1.2  1  TIGR00382 clpX: ATP-dependent Clp protease, ATP-binding subunit ClpX
     0.0051   12.9   0.1       0.14    8.1   0.0    2.1  2  TIGR02639 ClpA: ATP-dependent Clp protease ATP-binding subunit ClpA
     0.0058   13.1   0.0     0.0093   12.4   0.0    1.2  1  TIGR00764 lon_rel: putative ATP-dependent protease
  ------ inclusion threshold ------
      0.029   12.0   0.0       0.94    7.1   0.0    2.3  2  TIGR02237 recomb_radB: DNA repair and recombination protein RadB
      0.031   11.6   0.0      0.092   10.1   0.0    1.7  1  TIGR03420 DnaA_homol_Hda: DnaA regulatory inactivator Hda


Domain annotation for each model (and alignments):
>> TIGR01242  26Sp45: 26S proteasome subunit P45 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  449.9   2.0  5.2e-138  1.4e-135      14     364 .]     104     455 ..      85     455 .. 0.95

  Alignments for each domain:
  == domain 1    score: 449.9 bits;  conditional E-value: 5.2e-138
   TIGR01242  14 ekkllekekirlere.verlrselerlrsppllvavvvevlddervvvksstGpkfvvnvskfidrkelkpGarvalnqrtlaivdvlptekdplvkaleveerpevsyediGGlekqlreireavelplkkpelfeevGieppkGvllyGppGtGktllakavaeetnatfirvvgselvkkyiGeGarlvrevfklakekapsiifideidaiaakrldsstsGdrevqrtllqllaeldGfdprgnvkviaatnrldildpallrpGrfdrlievplpdleGrleilkihtrkmklaedvdleelaklteGasGadlkaivteaGmfaireerdkvtmedflkavekvl 364
                 +  +  +e+++ + e  ++ r++++ +r  p+ va++ e++dd+++++ ss Gp++ vn+ +f+d+++l+pG+ +  + +  ++v +l +e dp+v  ++v++ p  +y diGGle q++ei+eavelpl +pel+e++Gi ppkGv+lyG pGtGktllakava++t atf+rv gsel++ky+G+G +lvre+f++a e+ap+i+fideida+++kr ds+++G+re+qrt+l+ll +ldGfd+r++vkvi atn+++ ldpal+rpGr+dr ie p pd++ r++i++iht km+l+edv+lee+    +  sGad+ka++teaG+ a+re+r kv++++f ka + v+
  MMETSP1137-20121227|5489_1 104 QEFVTRQEQVKPQEEsAQQERTKVDEIRGSPMGVATLEEMVDDNHAIISSSVGPEYYVNIMSFVDKDQLEPGSSLLTHYKVNSVVGILGDEVDPMVSVMKVDKAPVETYADIGGLESQIQEIKEAVELPLTHPELYEDIGIRPPKGVILYGEPGTGKTLLAKAVANQTSATFLRVTGSELIQKYLGDGPKLVRELFRVADEQAPTIVFIDEIDAVGTKRYDSTSGGEREIQRTMLELLNQLDGFDARDDVKVIMATNKIESLDPALIRPGRIDRKIEFPPPDQKTRRHIFQIHTTKMNLSEDVNLEEFVMSKDELSGADIKAMCTEAGLLALRERRMKVSQAEFKKARDYVM 455
                 33334456666666624677999************************************************************************************************************************************************************************************************************************************************************************************************************************************99876 PP

>> TIGR01243  CDC48: AAA family ATPase, CDC48 subfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  265.0   1.1   1.1e-81   2.9e-79     451     684 ..     211     446 ..     206     459 .. 0.92

  Alignments for each domain:
  == domain 1    score: 265.0 bits;  conditional E-value: 1.1e-81
   TIGR01243 451 kwediggleevkqelreavewplkakevfeklgirppkgvllfgppgtgktllakavatesganfiavrgpeilskwvgesekaireifrkarqaapaiifldeidaiapargadl..seavtdrivnqllteldgleensdvvviaatnrpdildpallrpgrldrlilvpapdeearleifkihtrslplaedvdleelakktegytgadieavvreaalaalresvksvakek 684
                  + diggle   qe++eave pl ++e++e +girppkgv+l+g pgtgktllakava+++ a f+ v g e++ k++g+  k +re+fr a + ap+i+f+deida+  +r  +   +e+  +r + +ll +ldg++  +dv vi atn+ + ldpal+rpgr+dr i  p+pd+++r +if+iht +++l+edv+lee+    +  +gadi+a++ ea l+alre  + v++  
  MMETSP1137-20121227|5489_1 211 TYADIGGLESQIQEIKEAVELPLTHPELYEDIGIRPPKGVILYGEPGTGKTLLAKAVANQTSATFLRVTGSELIQKYLGDGPKLVRELFRVADEQAPTIVFIDEIDAVGTKRYDSTsgGEREIQRTMLELLNQLDGFDARDDVKVIMATNKIESLDPALIRPGRIDRKIEFPPPDQKTRRHIFQIHTTKMNLSEDVNLEEFVMSKDELSGADIKAMCTEAGLLALRERRMKVSQAE 446
                 689************************************************************************************************************9766511567899999***************************************************************************************************8766665544 PP

>> TIGR01241  FtsH_fam: ATP-dependent metallopeptidase HflB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  263.9   0.1   2.2e-81   6.1e-79      51     298 ..     208     456 ..     197     462 .. 0.97

  Alignments for each domain:
  == domain 1    score: 263.9 bits;  conditional E-value: 2.2e-81
   TIGR01241  51 vkvtfkdvaGideakeelveivdf.LknpkkftklGakiPkGvllvGpPGtGktLlakavaGeagvpffsisGsdfvemfvGvGasrvrDlfeqakknaPciifiDeiDavGrkrgaglgggndereqtLnqlLvemDGfetnegvivlaatnrpdvLDkaLlrPGrfDrqvvvdkPdlkgreeilkvhakkvklaeevdlkkvarrtpGfsGadlanlvneaallaarknkkevtlkeleeavdrvia 298
                 +  t++d+ G++ + +e++e v+  L +p+ ++++G + PkGv+l+G+PGtGktLlakava + +  f++++Gs++++ + G G + vr+lf  a ++aP+i+fiDeiDavG kr  + +gg+ e ++t+  lL ++DGf+++++v v+ atn+ + LD+aL+rPGr Dr++    Pd k r++i+++h+ k++l+e+v+l++  ++   +sGad++ ++ ea lla r+++ +v++ e+++a+d v++
  MMETSP1137-20121227|5489_1 208 PVETYADIGGLESQIQEIKEAVELpLTHPELYEDIGIRPPKGVILYGEPGTGKTLLAKAVANQTSATFLRVTGSELIQKYLGDGPKLVRELFRVADEQAPTIVFIDEIDAVGTKRYDSTSGGEREIQRTMLELLNQLDGFDARDDVKVIMATNKIESLDPALIRPGRIDRKIEFPPPDQKTRRHIFQIHTTKMNLSEDVNLEEFVMSKDELSGADIKAMCTEAGLLALRERRMKVSQAEFKKARDYVMY 456
                 44589******************879***************************************************************************************************************************************************************************************************************************9987 PP

>> TIGR03689  pup_AAA: proteasome ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  202.9   1.3   6.9e-63   1.9e-60      89     391 ..     119     411 ..      96     460 .. 0.80

  Alignments for each domain:
  == domain 1    score: 202.9 bits;  conditional E-value: 6.9e-63
   TIGR03689  89 vrlneallvvealdaervGeivtlkevlddgralvvdkadeervvklagalaeeklraGdsllvdlkaglaleavpks...eveelvleevPdvtyadiGGldsqieqirdavelPflhkelyreydlkpPkGvllyGPPGcGktliakavanslaekvaedgeaksyflnikGPellnkyvGeterqirliferarekaaegrPvvvffdemdslfrtr...GsGvssdvettvvPqllaeldGveslenviviGasnredlidPailrPGrldvkirierPdaeaaadilakylte.dlPleedlaea 391
                  + +e+++v e ++++ +  ++tl+e++dd++a++++ ++ e+ v++ + + + +l++G sll   k++  +  +  +    v+ + ++ +P  tyadiGGl+sqi++i++avelP++h+ely++ +++pPkGv+lyG PG+Gktl+akavan           +++ fl + G el++ky+G+  + +r +f      a e+ P +vf+de+d++   r    sG   +++ t++  ll +ldG ++ ++v vi a+n+ + +dPa++rPGr+d ki    Pd+++ ++i++ + t+ +l  + +l e+
  MMETSP1137-20121227|5489_1 119 SAQQERTKVDEIRGSP-M-GVATLEEMVDDNHAIISSSVGPEYYVNIMSFVDKDQLEPGSSLLTHYKVNSVVGILGDEvdpMVSVMKVDKAPVETYADIGGLESQIQEIKEAVELPLTHPELYEDIGIRPPKGVILYGEPGTGKTLLAKAVANQ----------TSATFLRVTGSELIQKYLGDGPKLVRELFRV----ADEQAPTIVFIDEIDAVGTKRydsTSGGEREIQRTML-ELLNQLDGFDARDDVKVIMATNKIESLDPALIRPGRIDRKIEFPPPDQKTRRHIFQIHTTKmNLSEDVNLEEF 411
                 4444555555544444.3.489**********************************************9888766543111355566899**************************************************************95..........4569*************************75....56667************88883333555567777765.79*****************************************************988553122223333333 PP

>> TIGR02928  TIGR02928: orc1/cdc6 family replication initiation protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.0   5.9e-07   0.00016      38      66 ..     245     273 ..     208     282 .. 0.84
   2 !    8.2   0.1   0.00077      0.21     118     275 ..     296     454 ..     292     461 .. 0.76

  Alignments for each domain:
  == domain 1    score: 18.5 bits;  conditional E-value: 5.9e-07
   TIGR02928  38 srpsnvliyGktGtGKtavtkkvlkelee 66 
                 + p+ v++yG++GtGKt+ +k+v ++ ++
  MMETSP1137-20121227|5489_1 245 RPPKGVILYGEPGTGKTLLAKAVANQTSA 273
                 46899*******************99765 PP

  == domain 2    score: 8.2 bits;  conditional E-value: 0.00077
   TIGR02928 118 eelvkeleeredsliivLDEiDklvkkeade..........lLyeLsraeengdlekakvsvigisndlkfleeldervksslseeeivFppYdaeeLrdILeeRa.ekafkdgvlddeviplvaalaaqehGdaRkAidlLreageiAeeegsekvteehvekAqeki 275
                 +el+++ +e+  + i+ +DEiD + +k  d+          ++ eL+   +  d++   v vi  +n++++l+   + ++   ++++i+Fpp d++  r+I +  + ++ ++++v  +e +    +l+  +     kA+    eag +A +e + kv + + +kA++ +
  MMETSP1137-20121227|5489_1 296 RELFRVADEQAPT-IVFIDEIDAVGTKRYDStsggereiqrTMLELLNQLDGFDAR-DDVKVIMATNKIESLDP--ALIRPGRIDRKIEFPPPDQKTRRHIFQIHTtKMNLSEDVNLEEFVMSKDELSGAD----IKAM--CTEAGLLALRERRMKVSQAEFKKARDYV 454
                 6677766666665.5567*****9866666669999****9777777776777888.89********9876553..357888999***********99999997764777888887777776666665555....4554..4688888888888888888888888876 PP

>> TIGR03922  T7SS_EccA: type VII secretion AAA-ATPase EccA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.5   0.0   2.9e-08   7.9e-06     287     423 ..     221     359 ..     208     400 .. 0.72

  Alignments for each domain:
  == domain 1    score: 22.5 bits;  conditional E-value: 2.9e-08
   TIGR03922 287 qvaalkssvevalvRaerGlavaqr.skHlllaGPPGtGkttiArvvakiyaGlgvlrkpevrEvsRadligeyigeseaktneli...dkaLggvlFlDEayaLvekrdgakddfGleaidtLLarlE.....ndRdrlvviiAG 423
                 q++ +k++ve+ l+  e    +  r  k ++l G PGtGkt +A++va++ +        +   v  ++li +y+g+  +   el    d+    ++F+DE+ a+  kr++++     e+  t+L  l+     + Rd++ vi+A 
  MMETSP1137-20121227|5489_1 221 QIQEIKEAVELPLTHPELYEDIGIRpPKGVILYGEPGTGKTLLAKAVANQTS-------ATFLRVTGSELIQKYLGDGPKLVRELFrvaDEQAPTIVFIDEIDAVGTKRYDSTSGGEREIQRTMLELLNqldgfDARDDVKVIMAT 359
                 6666666666666666555555544146799******************976.......45667999***********999998762226667789*********99998887665455544444333311133358888888775 PP

>> TIGR00635  ruvB: Holliday junction DNA helicase RuvB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.0      0.16        44     247     278 ..     126     157 ..      93     170 .. 0.84
   2 !   19.8   0.0   2.7e-07   7.2e-05      32      94 ..     249     319 ..     223     324 .. 0.77

  Alignments for each domain:
  == domain 1    score: 0.8 bits;  conditional E-value: 0.16
   TIGR00635 247 liekfeggPvGletlaaalgedaetledvleP 278
                  +++ +g P+G+ tl  ++  +++ ++  + P
  MMETSP1137-20121227|5489_1 126 KVDEIRGSPMGVATLEEMVDDNHAIISSSVGP 157
                 5678999***********99999988877766 PP

  == domain 2    score: 19.8 bits;  conditional E-value: 2.7e-07
   TIGR00635  32 hvllyGPPGlGkttlakiiakelgvk.lkitsgpalekp.gDlaailtal......eegdvlfiDeihrls 94 
                  v+lyG PG Gkt lak +a++  ++ l++t +  ++k  gD   ++ +l      ++  ++fiDei ++ 
  MMETSP1137-20121227|5489_1 249 GVILYGEPGTGKTLLAKAVANQTSATfLRVTGSELIQKYlGDGPKLVRELfrvadeQAPTIVFIDEIDAVG 319
                 589*****************9987543899999999995356444444432222224557*******9875 PP

>> TIGR00390  hslU: ATP-dependent protease HslVU, ATPase subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.2   0.0   0.00083      0.23      47      83 ..     247     283 ..     237     304 .. 0.85
   2 !    8.0   0.0   0.00096      0.26     249     283 ..     308     341 ..     293     346 .. 0.83

  Alignments for each domain:
  == domain 1    score: 8.2 bits;  conditional E-value: 0.00083
   TIGR00390  47 PknilmiGstGvGkteiarrlaklaeaPfikveatkf 83 
                 Pk +++ G  G Gkt +a+ +a  + a f++v  +  
  MMETSP1137-20121227|5489_1 247 PKGVILYGEPGTGKTLLAKAVANQTSATFLRVTGSEL 283
                 9******************************987765 PP

  == domain 2    score: 8.0 bits;  conditional E-value: 0.00096
   TIGR00390 249 GiifideidkiakkgessgadvsreGvqrdllPiv 283
                  i+fideid + +k   s++   re +qr +l ++
  MMETSP1137-20121227|5489_1 308 TIVFIDEIDAVGTKRYDSTSGGERE-IQRTMLELL 341
                 69************98888888887.999999876 PP

>> TIGR02881  spore_V_K: stage V sporulation protein K
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0   2.1e-06   0.00058      45     176 ..     250     382 ..     211     426 .. 0.78

  Alignments for each domain:
  == domain 1    score: 16.8 bits;  conditional E-value: 2.1e-06
   TIGR02881  45 mifkGnPGtGkttvarllaklfkelnvlskGhlieveradlvGeyiGhtaqktrevikka...lGGvlfidea.......yslarGGekdfGkeaidtlvk.emedkreelvlilaGysdemdyflslnPGlksrfpisldfp 176
                 +i+ G+PGtGkt +a+ +a+        +   ++ v  ++l+ +y+G+  + +re+ + a      ++fide        y  + GGe++  +  ++ l + +  d r+++ +i+a  + e      + PG   r+  +++fp
  MMETSP1137-20121227|5489_1 250 VILYGEPGTGKTLLAKAVANQ-------TSATFLRVTGSELIQKYLGDGPKLVRELFRVAdeqAPTIVFIDEIdavgtkrYDSTSGGEREIQRTMLELLNQlDGFDARDDVKVIMATNKIESLDPALIRPG---RIDRKIEFP 382
                 5889***********999975.......4567899999******************9987322468*****96333444466788******9999988876234599999999999877664322223343...555556665 PP

>> TIGR00763  lon: ATP-dependent protease La
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.1      0.46   1.3e+02      55     148 ..      46     144 ..      36     171 .. 0.56
   2 !   14.9   0.0   5.4e-06    0.0015     356     434 ..     250     324 ..     245     351 .. 0.75

  Alignments for each domain:
  == domain 1    score: -1.4 bits;  conditional E-value: 0.46
   TIGR00763  55 ieeeedvykvgvlaqilelvklkdekskketl.kvvleglrrikikelvekeevlvvkveelk.eeelekdd...eevkalseeiletlkeliklsklf 148
                  +++++ y+    +++ ++ k+k    +++++ +vv ++++++++ +l + +++l+++ e ++ +e+++ ++   ++ ++ + ei  + + ++ l++++
  MMETSP1137-20121227|5489_1  46 KDKKAKKYEAPAPTRVGKKKKKKPGPAHNQRIpTVVPNTKCKLRLLKLERVKDYLLMEQEFVTrQEQVKPQEesaQQERTKVDEIRGSPMGVATLEEMV 144
                 456666777777667666666666665555551455567777777777777777766666555322222222000233334444444455555555555 PP

  == domain 2    score: 14.9 bits;  conditional E-value: 5.4e-06
   TIGR00763 356 lclvGPPGVGKtSlaksiAkalnrkfvrlslGGlkDvaeikGHRrtYvGalPGkiiqglkkv.ktenP.lillDEiDKlg....s 434
                 ++l+G PG GKt lak++A+ +  +f+r++       +e+    + Y+G  P k++  l +v + + P ++++DEiD +g     
  MMETSP1137-20121227|5489_1 250 VILYGEPGTGKTLLAKAVANQTSATFLRVTG------SEL---IQKYLGDGP-KLVRELFRVaDEQAPtIVFIDEIDAVGtkryD 324
                 579*************************863......343...257999999.77777766515566745679999999855441 PP

>> TIGR00382  clpX: ATP-dependent Clp protease, ATP-binding subunit ClpX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0   4.3e-06    0.0012     120     198 ..     250     322 ..     238     342 .. 0.84

  Alignments for each domain:
  == domain 1    score: 15.8 bits;  conditional E-value: 4.3e-06
   TIGR00382 120 illiGptGsGktllaqtlakeldvpfaiadattlteaGyvGedvenillkllqaadydvekaekGiiyideidkiarks 198
                 ++l G  G+Gktlla+++a++    f     + l +  y+G+    ++ +l+++ad +       i++ideid +  k 
  MMETSP1137-20121227|5489_1 250 VILYGEPGTGKTLLAKAVANQTSATFLRVTGSELIQ-KYLGD-GPKLVRELFRVADEQA----PTIVFIDEIDAVGTKR 322
                 678999*******************99888888876.69995.678999****999654....57*********98765 PP

>> TIGR02639  ClpA: ATP-dependent Clp protease ATP-binding subunit ClpA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.1   0.0   0.00051      0.14     485     526 ..     245     286 ..     213     288 .. 0.82
   2 ?    3.6   0.0     0.012       3.2     257     300 ..     286     331 ..     284     343 .. 0.80

  Alignments for each domain:
  == domain 1    score: 8.1 bits;  conditional E-value: 0.00051
   TIGR02639 485 kPvgsflfvGptGvGktelakqLaeelgvellrfDmseymek 526
                 +P    + +G  G Gkt lak++a++ + ++lr   se   k
  MMETSP1137-20121227|5489_1 245 RPPKGVILYGEPGTGKTLLAKAVANQTSATFLRVTGSELIQK 286
                 455566788999**********************99998877 PP

  == domain 2    score: 3.6 bits;  conditional E-value: 0.012
   TIGR02639 257 kyrGdfeerlkevveeiekeedailfiDeihtivga..gatsggsl 300
                 ky Gd  + ++e+ +  +++  +i+fiDei ++     ++tsgg+ 
  MMETSP1137-20121227|5489_1 286 KYLGDGPKLVRELFRVADEQAPTIVFIDEIDAVGTKryDSTSGGER 331
                 899999999999999999999*********9874422267777765 PP

>> TIGR00764  lon_rel: putative ATP-dependent protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.4   0.0   3.4e-05    0.0093      38      60 ..     248     270 ..     243     279 .. 0.87

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 3.4e-05
   TIGR00764  38 rnvlliGePGvGksmlakamael 60 
                 + v+l GePG+Gk++laka+a+ 
  MMETSP1137-20121227|5489_1 248 KGVILYGEPGTGKTLLAKAVANQ 270
                 569*****************975 PP

>> TIGR02237  recomb_radB: DNA repair and recombination protein RadB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   0.0    0.0034      0.94      17      42 ..     252     277 ..     247     279 .. 0.83
   2 ?    2.3   0.0       0.1        28      84     149 ..     293     362 ..     285     372 .. 0.75

  Alignments for each domain:
  == domain 1    score: 7.1 bits;  conditional E-value: 0.0034
   TIGR02237  17 iyGpggsGKtnialilaveaaekgkk 42 
                 +yG++g+GKt +a  +a ++ +++ +
  MMETSP1137-20121227|5489_1 252 LYGEPGTGKTLLAKAVANQTSATFLR 277
                 7************9999998887765 PP

  == domain 2    score: 2.3 bits;  conditional E-value: 0.1
   TIGR02237  84 kaiqkaskliekekadlvvvDsl....talyRleksddrislklelarqlslLlslArkkdlavvi.tnqv 149
                 k +++++++++++   +v +D +    t+ y +  +++r ++++ + + l+ L  + ++ d+ v++ tn++
  MMETSP1137-20121227|5489_1 293 KLVRELFRVADEQAPTIVFIDEIdavgTKRYDSTSGGER-EIQRTMLELLNQLDGFDARDDVKVIMaTNKI 362
                 678888889999888888888873334456777777775.888888888999999999****998746766 PP

>> TIGR03420  DnaA_homol_Hda: DnaA regulatory inactivator Hda
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0   0.00034     0.092      41     104 ..     250     320 ..     243     328 .. 0.61

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 0.00034
   TIGR03420  41 lylwGesgsGksHLLqAacaaaeeagksai.....ylplkelaqllvev..legleqaelvalDdvealag 104
                 + l+Ge+g+Gk+ L +A++++++++  ++         l +  +l  e+  ++  ++ ++v +D+++a+  
  MMETSP1137-20121227|5489_1 250 VILYGEPGTGKTLLAKAVANQTSATFLRVTgseliQKYLGDGPKLVRELfrVADEQAPTIVFIDEIDAVGT 320
                 689****************9987664444300000222333333434542233344455667777777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (468 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       214  (0.0521697); expected 82.0 (0.02)
Passed bias filter:                      173  (0.0421745); expected 82.0 (0.02)
Passed Vit filter:                        49  (0.0119454); expected 4.1 (0.001)
Passed Fwd filter:                        15  (0.00365675); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.56u 0.19s 00:00:00.75 Elapsed: 00:00:00.63
# Mc/sec: 980.49
//
Query:       MMETSP1137-20121227|5490_1  [L=128]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (128 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       275  (0.0670405); expected 82.0 (0.02)
Passed bias filter:                      188  (0.0458313); expected 82.0 (0.02)
Passed Vit filter:                        19  (0.00463189); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.16s 00:00:00.35 Elapsed: 00:00:00.33
# Mc/sec: 511.96
//
Query:       MMETSP1137-20121227|5491_1  [L=496]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (496 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       120  (0.029254); expected 82.0 (0.02)
Passed bias filter:                       96  (0.0234032); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.17s 00:00:00.51 Elapsed: 00:00:00.48
# Mc/sec: 1363.89
//
Query:       MMETSP1137-20121227|5493_1  [L=318]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0033   14.5   0.0     0.0068   13.5   0.0    1.6  1  TIGR01746 Thioester-redct: thioester reductase domain


Domain annotation for each model (and alignments):
>> TIGR01746  Thioester-redct: thioester reductase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   0.0   1.6e-06    0.0068      39      96 ..      94     148 ..      46     155 .. 0.67

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 1.6e-06
   TIGR01746  39 haleRLrealrsyrleeeklaaerievvaGdlseprlGLseaewerLaeevdtivhng 96 
                 +  + Lr+  + + l+  +    ++ +v Gd+s+++lG+ +     L++ v +iv+++
  MMETSP1137-20121227|5493_1  94 D--AQLRSIRKVANLSGPSQH-TNLHFVEGDISQENLGFGKSLCTTLQQRVTYIVNAA 148
                 3..345555555556666655.5899*****************************977 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (318 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       102  (0.0248659); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.27u 0.15s 00:00:00.42 Elapsed: 00:00:00.55
# Mc/sec: 763.14
//
Query:       MMETSP1137-20121227|5494_1  [L=278]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (278 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        91  (0.0221843); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.14s 00:00:00.35 Elapsed: 00:00:00.40
# Mc/sec: 917.32
//
Query:       MMETSP1137-20121227|5495_1  [L=228]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.1e-48  160.8   0.0    8.3e-48  160.6   0.0    1.0  1  TIGR00197 yjeF_nterm: YjeF homolog, N-terminus


Domain annotation for each model (and alignments):
>> TIGR00197  yjeF_nterm: YjeF homolog, N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  160.6   0.0     2e-51   8.3e-48       4     205 ..       7     203 ..       4     204 .. 0.91

  Alignments for each domain:
  == domain 1    score: 160.6 bits;  conditional E-value: 2e-51
   TIGR00197   4 vsekemaidkeaaeelgltkalLMenAgkavaeevlkayplakkvivlcGpGnNGGDGfvvARhlk..gfkveVfllkkeeeielteeaaenlkilkvgvisveegkelvkpekadviiDallGtglkgklrepfktiveeinelkafkvsvdvpsGldvetGaveev.aveadltvtlhklKpgllkaraevlgelkvkkigip 205
                 ++ ++ a+d+ ++ + g+++++LMe Ag +va +v +++p a++v+ +cGpGnNGGDG+v+ARhl   g+++ V+++k+++++ l  + a ++++++++v++         +++ dvi Da++G+++ g++r pf t++  + +++ ++vsvd+psG+dve+G+  +v  ++++++v+l+ +K++ ++ +    g ++++++++p
  MMETSP1137-20121227|5495_1   7 SQSEAVAVDEALMATPGFSVDQLMELAGLSVAAAVATHFPKAGRVLCVCGPGNNGGDGLVAARHLWqfGWQPTVVYPKRSSKT-LFVNLATQMEMMEIPVLEAMPA---DLETEYDVILDAIFGFSFSGSVRAPFDTVLPALQQSALPVVSVDIPSGWDVEQGPPAGVdHLKPEMLVSLTMPKKCASHFN----GAHYLGGRFVP 203
                 5567788999999****************************************************97888899********99.7888899999997776665555...678899************************************************98876469***************9999....99999999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (228 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        70  (0.0170648); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.22u 0.11s 00:00:00.33 Elapsed: 00:00:00.53
# Mc/sec: 567.80
//
Query:       MMETSP1137-20121227|5498_1  [L=1580]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   3.7e-210  697.3   0.0   9.5e-137  454.8   0.0    2.1  2  TIGR00631 uvrb: excinuclease ABC subunit B
      3e-26   90.0   0.0    1.2e-18   65.0   0.0    2.2  2  TIGR00194 uvrC: excinuclease ABC subunit C
    4.6e-14   49.6   0.0    3.3e-08   30.2   0.0    2.2  2  TIGR01389 recQ: ATP-dependent DNA helicase RecQ
    1.2e-12   45.1   0.0    5.1e-07   26.6   0.0    2.1  2  TIGR00643 recG: ATP-dependent DNA helicase RecG
    2.5e-11   40.7   0.1    7.7e-08   29.1   0.0    2.4  2  TIGR00595 priA: primosomal protein N'
      2e-08   31.7   1.2    2.8e-08   31.2   0.2    1.6  2  TIGR01388 rnd: ribonuclease D
    1.2e-06   25.0   0.0     0.0033   13.6   0.0    2.1  2  TIGR00580 mfd: transcription-repair coupling factor
    0.00012   17.6   0.1     0.0047   12.3   0.0    2.1  2  TIGR01054 rgy: reverse gyrase
     0.0021   14.9   0.0       0.19    8.5   0.0    2.2  2  TIGR04095 dnd_restrict_1: DNA phosphorothioation system restriction enzyme
  ------ inclusion threshold ------
      0.059    9.9   0.0       0.12    8.9   0.0    1.4  1  TIGR00614 recQ_fam: ATP-dependent DNA helicase, RecQ family


Domain annotation for each model (and alignments):
>> TIGR00631  uvrb: excinuclease ABC subunit B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  240.4   0.0   1.7e-74   6.9e-72       2     192 ..     780     970 ..     779    1000 .. 0.96
   2 !  454.8   0.0  2.3e-139  9.5e-137     229     585 ..    1081    1445 ..    1067    1479 .. 0.93

  Alignments for each domain:
  == domain 1    score: 240.4 bits;  conditional E-value: 1.7e-74
   TIGR00631   2 fklkseykPaGDqpkaieklvesleagekeqvLlGvtGsGktftianviakvqkPtlvlahnktLaaqLyeelkelfPenaveyfvsyyDyyqPeayvpskdlyiekdasindeierlrlsatksllerrDvivvasvsaiyglgsPeeylklalklevgkeidreelleklvelqyerndvelergkfrv 192
                 f+l+++y+ +GDqp+ai+ lv +le+ge ++vL+G+tG+Gktf +a+ ia ++kPtl++a+nk+LaaqLy+el+++fP nav +fvs++Dyy+Pe+y +++ ++ ek + in+ i+ lr+ at +l+errD+ivvasvs+iyglg P++yl++a+ l vg++  ++el++ l  + yer+ v+ erg+f+ 
  MMETSP1137-20121227|5498_1 780 FELHAPYEASGDQPSAISGLVAELESGEPRVVLKGATGTGKTFVMAQTIAALNKPTLLIAPNKVLAAQLYSELRSFFPRNAVSFFVSHFDYYRPESYSAASATHTEKVSRINEAIDTLRHQATCALFERRDTIVVASVSCIYGLGMPAKYLEAAILLAVGQTHAEDELQDLLRAMLYERSAVARERGQFSW 970
                 9********************************************************************************************************************************************************************************************85 PP

  == domain 2    score: 454.8 bits;  conditional E-value: 2.3e-139
   TIGR00631  229 gevlkeleeltifpashyvvpeekleeaikeikeeleerlkvleeenklleaqrlkqrteyDlemlkelGyckGienysrhlegrkagepPatlldylp.edfllviDeshvtlpqlrgmyegDrsrkktLveyGfrLPsaldnrPlkfeefeekvkqvvyvsatPgkleleks..eeevveqiirPtgllDPevevrpte..gqvdd.lleeirervaknervlvttltkkmaedltdylkelgikvkylhseidtlerveiirdLrkgefdvlvGinLLreGlDlPevslvailDadkeGflrsersLiqtiGraarnveGkvilyadk..itesmekaieeterrrkiqieyneehgitPkt 585 
                  ++v  +++e+ ++pash+ v  ++l +++ +i+eel++r + le+ ++  ea+rl+ r++ Dle ++e+Gyc+G+eny+rhl+ r++gepP+tlldy+p +d+ll++De h+t pq+ +m+ gD+ rk++Lv +GfrLPsaldnrPl+  ef+++v q+v +satPg++       + +v e i+rPtg+ DP+v+v  +e  g v+d ll +i++r+a +e++lvt+ltk+ ae+l+ +l+ +g+ +++lhs+++ +er+e i+ Lr+g++dvl+G n+LreGlDlPevslvai+Dadk+Gflrse+sLiqtiGraar+v+G+++ly+++  i+++m++ai+eterrr+ q+++ne+hg+tP+ 
  MMETSP1137-20121227|5498_1 1081 EAVAAAVSEFVLYPASHHTVAGDELGSVMAAIEEELASRATHLESLGQWREAERLRFRVNADLEQMRECGYCRGMENYARHLAXRSEGEPPETLLDYMPqDDWLLLVDECHITAPQISAMFAGDHQRKRNLVAHGFRLPSALDNRPLTSAEFWARVPQAVLISATPGAEVERLCgmSPSVTELIVRPTGVPDPQVRVISAEevGGVEDhLLAQIESRRAVGEKTLVTVLTKRSAEELARFLDARGVPAAWLHSDLKPVERLEAIDGLRNGQYDVLIGCNMLREGLDLPEVSLVAIIDADKQGFLRSETSLIQTIGRAARHVDGTALLYTQSgvISDAMRAAIDETERRRTRQQQHNEAHGLTPRG 1445
                  56678899******************************************************************************************6268****************************************************************986554431135799**************9976652256766599*********************************************************************************************************************87555******************************96 PP

>> TIGR00194  uvrC: excinuclease ABC subunit C
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.7   0.0   1.9e-08   7.7e-06     382     437 ..     236     292 ..     225     302 .. 0.87
   2 !   65.0   0.0   2.8e-21   1.2e-18     449     572 ..     375     494 ..     365     496 .. 0.93

  Alignments for each domain:
  == domain 1    score: 22.7 bits;  conditional E-value: 1.9e-08
   TIGR00194 382 krleifDishikgeqtvasmvvfedgkplkeeyRrYkiksikkgDdyaamke.vlrr 437
                  r+e+fD+sh+ g++t a+  v  +g+ + + yR Y i++i  +Dd aa+   +l+r
  MMETSP1137-20121227|5498_1 236 ARIEAFDVSHLFGDHTMAASSVLVNGVLQPSLYRSYTIRGIPAADDCAALYSaLLTR 292
                 79********************************************99875414444 PP

  == domain 2    score: 65.0 bits;  conditional E-value: 2.8e-21
   TIGR00194 449 plpdliliDGGkgQlnaalevlkslkvvnkviviglaKakreegdeiliiekeekeiklnspalqllqkirdEahrfAisfhrkkrekkslqselekieGvGekrkkkLLkyfgslkkikkasv 572
                  lpd++liDGGkgQl+aa+  l+  +++++v v++laK  ++e   +l+   ++++++  sp+l llq++rdE h  A   hr++r+ + + s l+  + + ++ +++L ++f s  ++++a v
  MMETSP1137-20121227|5498_1 375 ALPDVLLIDGGKGQLEAAQRALAVAGLTRRVRVLALAK--QQE-VLYLPHRRHGVALSRTSPTLLLLQRLRDECHASALLAHRQRRHAHGFASVLDGAP-IDAAARRALRQHFASATELRDADV 494
                 478***********************************..333.68999**********************************************9987.9*******************9976 PP

>> TIGR01389  recQ: ATP-dependent DNA helicase RecQ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0   9.4e-07   0.00039     217     351 ..    1292    1433 ..    1276    1451 .. 0.76
   2 !   30.2   0.0     8e-11   3.3e-08     514     589 ..    1476    1551 ..    1458    1553 .. 0.88

  Alignments for each domain:
  == domain 1    score: 16.8 bits;  conditional E-value: 9.4e-07
   TIGR01389  217 eylkkere..ksGiiYassRkkveelaeaLeskgiealaYhaGlskkvRaeaqekFleddvkvvvatvaFGmGidksdvRfvihldlPkn..l...esyyqeaGRaGRDGlkaeaillyseaDl..allkrlieeseasedrkq 351 
                    ++++r   +  ++   +++  eela++L ++g++a+  h+ l+  +R ea +   + +  v++  +    G+d ++v  v+ +d  k+  l    s  q  GRa R      + lly+++ +    ++  i+e+e    r+q
  MMETSP1137-20121227|5498_1 1292 AQIESRRAvgEKTLVTVLTKRSAEELARFLDARGVPAAWLHSDLKPVERLEAIDGLRNGQYDVLIGCNMLREGLDLPEVSLVAIIDADKQgfLrseTSLIQTIGRAARHVDG--TALLYTQSGVisDAMRAAIDETERRRTRQQ 1433
                  555554443466788899****************************************************************99988764332221579999****996544..345666555411344555666555544444 PP

  == domain 2    score: 30.2 bits;  conditional E-value: 8e-11
   TIGR01389  514 kalsvevdeaLfeaLrelRkelaeeenvppyviFsDstLkelaekkPatlnellkikGvGeakldrygeallevir 589 
                  +++  + +++ +ea+ ++R e+a +++vp + + +D+ +  +a + P +++el  ++G+G + ++r+geal+ v++
  MMETSP1137-20121227|5498_1 1476 RSTLDAPQRRRYEAMCAWREEQAVANGVPRFRVMTDAMMLRVAVAAPSSAEELAAVRGIGPKTMKRHGEALMSVLQ 1551
                  44555667789*************************************************************9987 PP

>> TIGR00643  recG: ATP-dependent DNA helicase RecG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.6   0.0   1.2e-09   5.1e-07     232     313 ..     784     861 ..     777     876 .. 0.87
   2 !   16.2   0.0   1.7e-06    0.0007     486     553 ..    1329    1400 ..    1306    1421 .. 0.78

  Alignments for each domain:
  == domain 1    score: 26.6 bits;  conditional E-value: 1.2e-09
   TIGR00643 232 LPfelTeaQkravkeileDlksdvpmnRLlqGdVGsGKTvVavlallaviesGyqvalmaPTeiLAeQhyeklrelleplgi 313
                  P+e   +Q +a++ +++ l+s +p    l+G  G+GKT V + ++ a+ +    ++l+aP  +LA+Q y +lr++++  ++
  MMETSP1137-20121227|5498_1 784 APYEASGDQPSAISGLVAELESGEPR-VVLKGATGTGKTFVMAQTIAALNK---PTLLIAPNKVLAAQLYSELRSFFPRNAV 861
                 6**********************995.478***********9877665544...59*********************97544 PP

  == domain 2    score: 16.2 bits;  conditional E-value: 1.7e-06
   TIGR00643  486 allhgrlksdekeevleeFrekevdiLvaTtviEvGvdvPnatvmviedaeRfGl....sqLHQLRGRvgRg 553 
                  a lh+ lk+ e+ e++   r+++ d+L+  +++  G+d+P+++++ i da++ G     + L Q  GR +R 
  MMETSP1137-20121227|5498_1 1329 AWLHSDLKPVERLEAIDGLRNGQYDVLIGCNMLREGLDLPEVSLVAIIDADKQGFlrseTSLIQTIGRAARH 1400
                  668999999999999999999999999999999999999999999999999999744434577777777764 PP

>> TIGR00595  priA: primosomal protein N'
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.9   0.0   0.00026      0.11       2      54 ..     812     861 ..     811     887 .. 0.85
   2 !   29.1   0.0   1.9e-10   7.7e-08     274     383 ..    1310    1411 ..    1299    1444 .. 0.76

  Alignments for each domain:
  == domain 1    score: 8.9 bits;  conditional E-value: 0.00026
   TIGR00595   2 leGvtGSGKtEvylkviekvlakgksvlvLvPEiaLtaqllkrlkerfgseva 54 
                 l+G tG GKt v  + i+   a +k  l++ P   L+aql ++l++ f  +++
  MMETSP1137-20121227|5498_1 812 LKGATGTGKTFVMAQTIA---ALNKPTLLIAPNKVLAAQLYSELRSFFPRNAV 861
                 89********99888776...67999*******************99977654 PP

  == domain 2    score: 29.1 bits;  conditional E-value: 1.9e-10
   TIGR00595  274 tekveeelkkllp..kariarldsDttrrkkalealleqfaagkidiliGtqmiaKGldfpkvtlvgvlsaDsglklpdfRaaErtfqlltqvaGRagRaekpgevliqtvn 383 
                  t++ +eel+++l+  ++  a l sD    ++   + ++ +++g+ d+liG  m+  Gld+p+v+lv++++aD+    + +R+     + l q  GRa+R + +g+ l+ t++
  MMETSP1137-20121227|5498_1 1310 TKRSAEELARFLDarGVPAAWLHSDLKPVER--LEAIDGLRNGQYDVLIGCNMLREGLDLPEVSLVAIIDADKQ---GFLRS----ETSLIQTIGRAAR-HVDGTALLYTQS 1411
                  5566677777765223556677777766666..678999*********************************75...44555....46688999*****.667777777754 PP

>> TIGR01388  rnd: ribonuclease D
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.0       2.3   9.6e+02     295     350 ..    1076    1131 ..    1060    1136 .. 0.66
   2 !   31.2   0.2   6.8e-11   2.8e-08     204     279 ..    1478    1553 ..    1467    1572 .. 0.90

  Alignments for each domain:
  == domain 1    score: -3.4 bits;  conditional E-value: 2.3
   TIGR01388  295 espgakallkllkklvkevaetlglasellask.kqleklleerekalpdalqgWRr 350 
                  e ++++a++ ++ + v   a ++ +a + l s    +e+ l++r     ++l +WR 
  MMETSP1137-20121227|5498_1 1076 EAEAHEAVAAAVSEFVLYPASHHTVAGDELGSVmAAIEEELASRA-THLESLGQWRE 1131
                  445666666667777777777777776666554156776666644.67788999986 PP

  == domain 2    score: 31.2 bits;  conditional E-value: 6.8e-11
   TIGR01388  204 klkpkelavlkalaaWRereAreRdkprnfvlkeeallelarlaprnleeleel.glkgkeirksgdkllalvkeAl 279 
                   l++++  + +a++aWRe++A+   +pr +v+ +  +l +a  ap ++eel+++ g+ +k+++++g++l++++ +Al
  MMETSP1137-20121227|5498_1 1478 TLDAPQRRRYEAMCAWREEQAVANGVPRFRVMTDAMMLRVAVAAPSSAEELAAVrGIGPKTMKRHGEALMSVL-QAL 1553
                  5788899999********************************************66************99755.454 PP

>> TIGR00580  mfd: transcription-repair coupling factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   0.0     8e-06    0.0033     440     522 ..     778     856 ..     771     872 .. 0.85
   2 !    9.0   0.0   0.00019     0.078     689     754 ..    1330    1399 ..    1323    1419 .. 0.82

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 8e-06
   TIGR00580 440 aefedafpfeeTeDQlkaieevkkDlekekpmDRlvcGDvGfGKTEvamrAafkavldgkQvavlvPTTlLaeQHfetlkeRf 522
                  +fe ++p+e   DQ  ai+ + ++le+ +p   ++ G  G GKT v  +    a+l+ k   +++P  +La Q +++l+  f
  MMETSP1137-20121227|5498_1 778 GAFELHAPYEASGDQPSAISGLVAELESGEPR-VVLKGATGTGKTFVMAQT--IAALN-KPTLLIAPNKVLAAQLYSELRSFF 856
                 57999*************************94.3568********986554..45554.67899*************998766 PP

  == domain 2    score: 9.0 bits;  conditional E-value: 0.00019
   TIGR00580  689 iaHgqmeeeeleevmleFlkkefdvLvcTtiiEsGidipnaNTiiierAdkfGl....aqLyQLrGRvGR 754 
                    H+ ++  e  e +    ++++dvL+   ++  G+d+p++  + i +Adk G+    + L Q  GR  R
  MMETSP1137-20121227|5498_1 1330 WLHSDLKPVERLEAIDGLRNGQYDVLIGCNMLREGLDLPEVSLVAIIDADKQGFlrseTSLIQTIGRAAR 1399
                  5789998888888889999*********************************974433456666666555 PP

>> TIGR01054  rgy: reverse gyrase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    2.8   0.0    0.0084       3.4     104     154 ..     816     863 ..     809     881 .. 0.86
   2 !   12.3   0.0   1.1e-05    0.0047     327     405 ..    1299    1375 ..    1275    1396 .. 0.78

  Alignments for each domain:
  == domain 1    score: 2.8 bits;  conditional E-value: 0.0084
   TIGR01054 104 tGvGkttfglvmslflakkgkrvyiilPttlLvkqvaeklsslaekeglni 154
                 tG Gkt+   vm+  +a+  k +++i P ++L++q ++ l+s+  ++ ++ 
  MMETSP1137-20121227|5498_1 816 TGTGKTF---VMAQTIAALNKPTLLIAPNKVLAAQLYSELRSFFPRNAVSF 863
                 999**97...68888999999*********************999887665 PP

  == domain 2    score: 12.3 bits;  conditional E-value: 1.1e-05
   TIGR01054  327 klGkGglvfvsidyGkekaeeieeelkekgvkakliha..kdk...edldkfeeGeidvliGvasyygvlvRGlDlPervryav 405 
                  ++G+ +lv v +   k  aee++++l  +gv a  +h+  k+    e +d +++G+ dvliG     ++l  GlDlPe++  a+
  MMETSP1137-20121227|5498_1 1299 AVGEKTLVTVLT---KRSAEELARFLDARGVPAAWLHSdlKPVerlEAIDGLRNGQYDVLIGC----NMLREGLDLPEVSLVAI 1375
                  566666666654...5899****************998776651114567789*********7....78889******998887 PP

>> TIGR04095  dnd_restrict_1: DNA phosphorothioation system restriction enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.5   0.0   0.00047      0.19      25      77 ..     808     855 ..     790     906 .. 0.84
   2 ?    4.0   0.0     0.011       4.3     326     387 ..    1338    1404 ..    1310    1462 .. 0.75

  Alignments for each domain:
  == domain 1    score: 8.5 bits;  conditional E-value: 0.00047
   TIGR04095  25 grGilkmatGtGktltaLalvsklaekikslvvvvvvPykhLveqWakeaekF 77 
                  r +lk atGtGkt    +++++l++      +++++P k L+ q + e+++F
  MMETSP1137-20121227|5498_1 808 PRVVLKGATGTGKTFVMAQTIAALNKP-----TLLIAPNKVLAAQLYSELRSF 855
                 57799*********9988888888665.....7889*************9998 PP

  == domain 2    score: 4.0 bits;  conditional E-value: 0.011
   TIGR04095  326 eeReellkqfesgelqalvairCLDeGvDvPairtayiLasss.....nPrqFiqRRGRvLRkspGk 387 
                   eR e +  + +g+ ++l+    L eG+D+P++    i+ + +          iq  GR  R+  G 
  MMETSP1137-20121227|5498_1 1338 VERLEAIDGLRNGQYDVLIGCNMLREGLDLPEVSLVAIIDADKqgflrSETSLIQTIGRAARHVDGT 1404
                  57888889999*********************98766554433111113456777777777777765 PP

>> TIGR00614  recQ_fam: ATP-dependent DNA helicase, RecQ family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   0.0   0.00029      0.12     222     350 ..    1297    1430 ..    1237    1442 .. 0.75

  Alignments for each domain:
  == domain 1    score: 8.9 bits;  conditional E-value: 0.00029
   TIGR00614  222 kefkgksGiiYClsrkkveqvaaeLqkkglaaaaYhagleesarkevqkkflrdeiqvvvatvafGmGinkpdvRfvihyslpk.....siesYYqesGRaGRDglksecvlfyapaDv.al.lrrllveekdekk 350 
                  ++  g+  ++  l+++++e++a  L  +g+ aa  h++l+  +r e      + + +v++       G++ p+v  v+  ++ k     s  s  q +GRa R  +  ++ l+y+++ v +  +r  + e +  ++
  MMETSP1137-20121227|5498_1 1297 RRAVGEKTLVTVLTKRSAEELARFLDARGVPAAWLHSDLKPVERLEAIDGLRNGQYDVLIGCNMLREGLDLPEVSLVAIIDADKqgflrSETSLIQTIGRAARH-VDGTA-LLYTQSGViSDaMRAAIDETERRRT 1430
                  4455677799999***************************************************************998887762222256799*********6.44445.4555544414313333433333332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1580 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       178  (0.0433935); expected 82.0 (0.02)
Passed bias filter:                      114  (0.0277913); expected 82.0 (0.02)
Passed Vit filter:                        34  (0.00828864); expected 4.1 (0.001)
Passed Fwd filter:                        10  (0.00243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 1.27u 0.17s 00:00:01.44 Elapsed: 00:00:02.52
# Mc/sec: 827.55
//
Query:       MMETSP1137-20121227|5499_1  [L=764]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.2e-71  238.0   0.0    5.3e-71  237.3   0.0    1.2  1  TIGR01982 UbiB: 2-polyprenylphenol 6-hydroxylase
    1.7e-06   25.5   0.0    2.8e-06   24.8   0.0    1.3  1  TIGR03724 arch_bud32: Kae1-associated kinase Bud32


Domain annotation for each model (and alignments):
>> TIGR01982  UbiB: 2-polyprenylphenol 6-hydroxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  237.3   0.0   2.6e-74   5.3e-71      35     424 ..      48     457 ..      28     466 .. 0.86

  Alignments for each domain:
  == domain 1    score: 237.3 bits;  conditional E-value: 2.6e-74
   TIGR01982  35 lakvskeearkeslgerlrlaleelGPifiKlGQvlstRaDllpeeiaeeLslLqdkvppfdlkaarkvieaelgk..pve..............elFaefeekPlAaASiaQvhkAvlvegkeVavKvlRPgiekkieadikllellaklvekllpeakrlrptevvkefektlkeEldlrlEaanaselkenfkndkklivPevywelt.servltlewidgipvsdleklkeaGldlkalaenlvesflkqvlrdgfFHaDlHpGNilvakdgkiialDfGivgrlseeerrylaeillgflerdykrvaevhleagyvpsdtdlaeleqairavgepivgkplkei............sigklLaklfkitekfelevqpeLlLLqKtlltvEGvgrqldpdldlwkvaepvvkk 424
                 la +s   ++++++g+ lr+ l++lGP ++K GQ+ls R+Dl+p++i eeL+lLq +  pfd  +a++vi +e+g+  p+                lFa+++  P+A+AS++Qv++  ++eg eVavKv+RP+  ++   d  ++  +   ++ l  ++   +  e+ +++++ + +Eld+r Eaana+ +++ ++   +++vP+   e+  + rvl+ ew+ g  ++ l + ++      ++a+  ve + +  l  g+ HaD+H+GNi+++  g++++lDfG++++++++  +++a+ ++++l++d + +++  + +g+v +  + +e e++   +++  v++ + e+            ++g+l + lf++ +++el ++p +lLL++t+lt+EGv+ ++dpd++++++a p+  +
  MMETSP1137-20121227|5499_1  48 LAVLSVWDEAQQTRGAVLRKELSKLGPCAVKAGQTLSQRPDLIPADICEELKLLQTENEPFDNLVAQRVISEEFGHtgPIApnlpplngvsigakPLFAHLSADPIASASLGQVYRGATHEGVEVAVKVQRPDALRQCLLDGCVVIAV---LSALQGKWGAGDLLEIFDTIAHGVVQELDFRNEAANAEAFAKSVAYLGYVTVPAPLHEYIpGPRVLVSEWVHGKHMNSLPADQAF-----NMAAMAVEAVTAGLLLTGIVHADPHEGNIMLDDSGRLVFLDFGLMSSVDPDIMEAFADGIQAVLNKDWHSLVHAFIATGFVGNPLRYREVENEG-DFVDGTVEQMAAELkakmeaadgglsRFGALSTVLFDMGKRWELYTPPYVLLLIRTFLTLEGVVAKVDPDFNIYEAALPWAIR 457
                 44444444556899************************************************************99556669***********9978************************************999998886554433...33444455566789******************************************9997478**********999998876665.....67778899999999***************************************************************************99874.4445555555554422122222233348899999*********************************************9644 PP

>> TIGR03724  arch_bud32: Kae1-associated kinase Bud32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.8   0.0   1.4e-09   2.8e-06      44     164 ..     230     356 ..     221     387 .. 0.68

  Alignments for each domain:
  == domain 1    score: 24.8 bits;  conditional E-value: 1.4e-09
   TIGR03724  44 trkEarllseakkagvntPvvy.dvdpeekkivmeyiegkklkdlleekelellke.vGelvgklHkagivhgDlttsNiiv.kddklyliDfGLgkk..skevedkavDlh.vlkrslestheela 164
                   +Ea + s a+   v++P+++ ++ p    +v e ++gk+++ l  ++  +++ + v  +++ l  +givh D++  Ni++ ++++l+++DfGL +    + +e  a  ++ vl++  +s+ + + 
  MMETSP1137-20121227|5499_1 230 ANAEAFAKSVAYLGYVTVPAPLhEYIPGPRVLVSEWVHGKHMNSLPADQAFNMAAMaVEAVTAGLLLTGIVHADPHEGNIMLdDSGRLVFLDFGLMSSvdPDIMEAFADGIQaVLNKDWHSLVHAFI 356
                 5556555555666667777765256677789999***********999887666551555667899****************55789*******966522333455555553255566666555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (764 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       113  (0.0275475); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.12s 00:00:00.62 Elapsed: 00:00:00.66
# Mc/sec: 1527.87
//
Query:       MMETSP1137-20121227|5500_1  [L=417]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (417 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       129  (0.0314481); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.16s 00:00:00.47 Elapsed: 00:00:00.69
# Mc/sec: 797.67
//
Query:       MMETSP1137-20121227|5501_1  [L=229]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (229 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        60  (0.014627); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.15s 00:00:00.36 Elapsed: 00:00:00.64
# Mc/sec: 472.27
//
Query:       MMETSP1137-20121227|5502_1  [L=172]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (172 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        56  (0.0136519); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.13s 00:00:00.30 Elapsed: 00:00:00.31
# Mc/sec: 732.33
//
Query:       MMETSP1137-20121227|5503_1  [L=1028]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.2e-19   64.8  12.7    8.8e-07   25.2   0.0    7.2  3  TIGR00870 trp: transient-receptor-potential calcium channel protein
  ------ inclusion threshold ------
       0.11    9.9   9.1       0.23    8.8   0.0    4.5  5  TIGR02382 wecD_rffC: TDP-D-fucosamine acetyltransferase


Domain annotation for each model (and alignments):
>> TIGR00870  trp: transient-receptor-potential calcium channel protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.2   0.0   4.3e-10   8.8e-07      61     161 ..      73     163 ..      65     168 .. 0.83
   2 !   22.5   0.2   2.8e-09   5.8e-06     128     159 ..     196     234 ..     191     348 .. 0.61
   3 !    7.0   2.7   0.00013      0.27     126     216 ..     396     506 ..     339     549 .. 0.67

  Alignments for each domain:
  == domain 1    score: 25.2 bits;  conditional E-value: 4.3e-10
   TIGR00870  61 saaieneneelteLllkke....egevGdalLhaiskelvdaveailllllkaarksltlselandestseftkgitalilAihkqnyeivklLlekgasveara 161
                  a++e +  e++ Ll++ +     ++vG  +Lh +s    ++   +++lll+a             +  s+  +g tal+ A+  +++eiv+ L+ +gasv ara
  MMETSP1137-20121227|5503_1  73 RAMQEENIPEMERLLQSGDeklaAAAVGRGMLHWASS---KGAGRLVRLLLDAGA-----------KVDSRNKQGSTALHAAATGNDLEIVHFLVSRGASVDARA 163
                 5778888888888888877778788888888888888...777788888888873...........45678899*****************************99 PP

  == domain 2    score: 22.5 bits;  conditional E-value: 2.8e-09
   TIGR00870 128 ftkgitalilAihkqnyeivklLlekgasve.......a 159
                   +g tal++A+++ ++ei klL++kga+v+        
  MMETSP1137-20121227|5503_1 196 SKRGETALHIAAQRGDVEIAKLLIQKGAKVQattsdegT 234
                 5689***************************44443330 PP

  == domain 3    score: 7.0 bits;  conditional E-value: 0.00013
   TIGR00870 126 seftkgitalilAihkqnyeivklLlekgasve.............arakgdefv.......ksqekdslyh.gespLnlaaclasesivsllsedpAdiltadslgntllh 216
                  + + git+l  A    n e v+lLl+ gas +             a+akg + v       + +  + l+   e pL  a     +s+ ++l+ ++Ad  ++ + g t+lh
  MMETSP1137-20121227|5503_1 396 RTRFSGITPLLSATSAGNTEAVELLLQHGASTSvvitqsgetplhvAAAKGWANVsqllidaRADL-NALSLrEETPLHYAVSGRHASVAEMLLAHGADADAEWRRGATVLH 506
                 344567777777777777777777777777766665555555555555555444445554432222.223221356666666666666666666666666666666666666 PP

>> TIGR02382  wecD_rffC: TDP-D-fucosamine acetyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.1     0.074   1.5e+02     135     186 ..     107     163 ..      73     165 .. 0.69
   2 ?    8.8   0.0   0.00011      0.23     153     186 ..     196     229 ..     173     231 .. 0.92
   3 ?   -0.0   0.0     0.058   1.2e+02     160     185 ..     305     330 ..     283     366 .. 0.63
   4 ?    2.4   0.0     0.011        22     152     182 ..     397     427 ..     372     432 .. 0.86
   5 ?   -2.3   0.0      0.29   5.8e+02     153     183 ..     498     528 ..     482     533 .. 0.83

  Alignments for each domain:
  == domain 1    score: -0.3 bits;  conditional E-value: 0.074
   TIGR02382 135 vqirGiG..arlmaaa..ka.warrrGltrlrvatqvgnvaalrlyirsGasiesta 186
                 ++++G+G  +rl+  a  k    +++G t l  a+  +++  ++  + +Gas+++ a
  MMETSP1137-20121227|5503_1 107 ASSKGAGrlVRLLLDAgaKVdSRNKQGSTALHAAATGNDLEIVHFLVSRGASVDARA 163
                 566777733344433311331345789999999999889999999999999998766 PP

  == domain 2    score: 8.8 bits;  conditional E-value: 0.00011
   TIGR02382 153 rrrGltrlrvatqvgnvaalrlyirsGasiesta 186
                  +rG t l +a+q g+v   +l i++Ga++++t+
  MMETSP1137-20121227|5503_1 196 SKRGETALHIAAQRGDVEIAKLLIQKGAKVQATT 229
                 589***************************9985 PP

  == domain 3    score: -0.0 bits;  conditional E-value: 0.058
   TIGR02382 160 lrvatqvgnvaalrlyirsGasiest 185
                 +  a+  g    l+l +++Ga++++t
  MMETSP1137-20121227|5503_1 305 VHAAASNGHSGVLKLLLQNGAAVDAT 330
                 44455555555566666666666655 PP

  == domain 4    score: 2.4 bits;  conditional E-value: 0.011
   TIGR02382 152 arrrGltrlrvatqvgnvaalrlyirsGasi 182
                 +r  G t l  at  gn+ a+ l +++Gas 
  MMETSP1137-20121227|5503_1 397 TRFSGITPLLSATSAGNTEAVELLLQHGAST 427
                 5667999999*******************85 PP

  == domain 5    score: -2.3 bits;  conditional E-value: 0.29
   TIGR02382 153 rrrGltrlrvatqvgnvaalrlyirsGasie 183
                  rrG t l  a + g+ a  +l + +Gas+ 
  MMETSP1137-20121227|5503_1 498 WRRGATVLHSACESGDAAIANLLLTHGASLT 528
                 379999************99*******9985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1028 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       142  (0.0346173); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.69u 0.13s 00:00:00.82 Elapsed: 00:00:00.83
# Mc/sec: 1634.76
//
Query:       MMETSP1137-20121227|5504_1  [L=270]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (270 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       135  (0.0329108); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.12s 00:00:00.35 Elapsed: 00:00:00.36
# Mc/sec: 989.92
//
Query:       MMETSP1137-20121227|5505_1  [L=432]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.2e-71  239.1   0.0      4e-71  238.8   0.0    1.0  1  TIGR01130 ER_PDI_fam: protein disulfide isomerases
    3.7e-34  115.0   0.0    7.9e-34  114.0   0.0    1.6  1  TIGR01126 pdi_dom: protein disulfide-isomerase domain
    3.3e-14   50.7   0.0    1.4e-13   48.7   0.0    1.9  2  TIGR01068 thioredoxin: thioredoxin
    4.5e-06   23.3   0.0    6.6e-06   22.8   0.0    1.1  1  TIGR00424 APS_reduc: 5'-adenylylsulfate reductase, thioredoxin-independent
     0.0043   14.5   0.0     0.0075   13.7   0.0    1.3  1  TIGR00385 dsbE: periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily


Domain annotation for each model (and alignments):
>> TIGR01130  ER_PDI_fam: protein disulfide isomerases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  238.8   0.0   4.9e-74     4e-71     109     446 ..      76     431 ..      74     432 .] 0.88

  Alignments for each domain:
  == domain 1    score: 238.8 bits;  conditional E-value: 4.9e-74
   TIGR01130 109 gPaskeletvedlekllekkevvvvgvfkdldselvetflevaeklrdkfkavasssdeaalkkleakkdevvlvkkkkee......ekeekveeeletdvealekfvkkeslplvgeftketaakifesk.plkvlllnveesk.kk.seellekflevakkfkgkkvkfavadeeefgkeleelglkaek.apavvi....lsleeskkyaleqeefssealkefvkdfldgklkpvlk...Sepiped...deepVkvvVgknfdeivldetKdVLvefYApWCGHCkkLapiYeelaekykkeedvviakldataNdvpe.fevegFPTilfvpagkksepvkyegdRtledlvk 446
                 +Pas+ ++++e+l++++++++ +v+g+f+++d++++++f ++ ++l+ + + +a++++ ++l+kl+ +k+++ l++ ++        +k++ + + ++ + +al++++++++ plvg+ft +t++++f++k p+++++ n + +  +k  +++l+++++va++++g k++fa+a+  +f+++l ++gl+a++  + v+i     + +e+  y  + ++fs+e l+ f+++fl+++l+p+ +   S p  +d   de+ V+++  +nfd++v d+tKdVLvefYApWCGHCk+L+p Y ++a+ +k e+++v+ak+data d p+ f+v+g+PT+lfvpa ++ +pv yeg+R+ +++v+
  MMETSP1137-20121227|5505_1  76 QPASEPITSLEELDAFIDNEDCSVIGAFASEDGDEYAEFEAAIQSLQYEWR-FAHTTAPEVLTKLKVSKSALFLYRSPRYVsekygdRKRDRFPS-SKISGSALKSWLQTRAQPLVGQFTPSTKERYFAKKlPVVIVFFNLNWEGdAKgANYFLNRVRKVATSMSG-KLSFAIAAIGDFEAQLGDFGLEASDlRHDVRIglvhKEGDEEVYYGSDATKFSAEXLSGFASAFLANELSPSSRrdtSAPAEDDdgvDESAVTTLTNDNFDQVVRDPTKDVLVEFYAPWCGHCKSLKPEYAKAAKALKGEKSLVLAKMDATAHDPPAgFDVQGYPTLLFVPAKADASPVPYEGEREADAIVE 431
                 7*********************************************99999.9999***********9999988888776566777655555544.445579*****************************999999999988885558*****************.999*******************9998555554221133344556666666*********************986322455544444557789***********************************************99***********************************************9987 PP

>> TIGR01126  pdi_dom: protein disulfide-isomerase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  114.0   0.0   9.7e-37   7.9e-34       1     100 [.     334     432 .]     334     432 .] 0.94

  Alignments for each domain:
  == domain 1    score: 114.0 bits;  conditional E-value: 9.7e-37
   TIGR01126   1 lvaenfdelvldenkdvlvefyaPWCGhCkklaPeyeklakelkkeeekvkiakvdataekelaskfkvsgfPtlkffkkgkke.pvdyeGeReaeelvef 100
                 l+++nfd++v d +kdvlvefyaPWCGhCk+l Pey k+ak+lk e+ ++++ak+data++  a  f+v+g+Ptl f++++ ++ pv yeGeRea+++ve+
  MMETSP1137-20121227|5505_1 334 LTNDNFDQVVRDPTKDVLVEFYAPWCGHCKSLKPEYAKAAKALKGEK-SLVLAKMDATAHDPPA-GFDVQGYPTLLFVPAKADAsPVPYEGEREADAIVEW 432
                 6899****************************************988.6**********99885.9************9876555*************997 PP

>> TIGR01068  thioredoxin: thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0      0.55   4.5e+02      10      35 ..     201     226 ..     193     245 .. 0.56
   2 !   48.7   0.0   1.7e-16   1.4e-13       2      76 ..     335     410 ..     334     431 .. 0.85

  Alignments for each domain:
  == domain 1    score: -1.0 bits;  conditional E-value: 0.55
   TIGR01068  10 vassdklvlvDfwAeWCgpCkmlaPv 35 
                 +a++  +v+v f  +W g  k     
  MMETSP1137-20121227|5505_1 201 FAKKLPVVIVFFNLNWEGDAKGANYF 226
                 33333334444445787777655544 PP

  == domain 2    score: 48.7 bits;  conditional E-value: 1.7e-16
   TIGR01068   2 seenfeetvassdklvlvDfwAeWCgpCkmlaPvleelakeleek..vkvvKlnvdeeqeiaakygirsiPtlllfk 76 
                 +++nf+++v +  k vlv+f+A+WCg Ck l P  +++ak l+++  + ++K++    ++ +a ++++  Ptll++ 
  MMETSP1137-20121227|5505_1 335 TNDNFDQVVRDPTKDVLVEFYAPWCGHCKSLKPEYAKAAKALKGEksLVLAKMDAT-AHDPPAGFDVQGYPTLLFVP 410
                 6899***********************************99876511666777765.4578889**********986 PP

>> TIGR00424  APS_reduc: 5'-adenylylsulfate reductase, thioredoxin-independent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.8   0.0   8.1e-09   6.6e-06     348     450 ..     325     424 ..     306     431 .. 0.74

  Alignments for each domain:
  == domain 1    score: 22.8 bits;  conditional E-value: 8.1e-09
   TIGR00424 348 ifesnnvvalsrqgienllkleerkeawlvvlyapwcpfcqameasyvelaeklagsgvkv.akfradgdqkefakqelqlgsfptillfpkrs.sraikypsek 450
                   +   v++l+ +  +++++     +  lv +yapwc  c++++  y + a+ l g+   v ak+ a  ++       ++++ +pt+l+ p ++ + ++ y  e+
  MMETSP1137-20121227|5505_1 325 GVDESAVTTLTNDNFDQVVRD--PTKDVLVEFYAPWCGHCKSLKPEYAKAAKALKGEKSLVlAKMDATAHDP---PAGFDVQGYPTLLFVPAKAdASPVPYEGER 424
                 456667778888877777664..3456799************************997665437777766543...34567789*******977625788888774 PP

>> TIGR00385  dsbE: periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   0.0   9.1e-06    0.0075      40      90 ..     326     374 ..     307     379 .. 0.68

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 9.1e-06
   TIGR00385  40 vpaekeaelkekvqlltaevlkk.gklvLlnvwasWCptCraehplLkelak 90 
                 v++   ++l+++   ++ +v++  +k vL+ ++a WC+ C+   p   + ak
  MMETSP1137-20121227|5505_1 326 VDESAVTTLTND--NFD-QVVRDpTKDVLVEFYAPWCGHCKSLKPEYAKAAK 374
                 444444444444..222.2333325789*************98888777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (432 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        54  (0.0131643); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.31u 0.13s 00:00:00.44 Elapsed: 00:00:00.50
# Mc/sec: 1140.39
//
Query:       MMETSP1137-20121227|5506_1  [L=320]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (320 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       119  (0.0290102); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.16s 00:00:00.41 Elapsed: 00:00:00.47
# Mc/sec: 898.65
//
Query:       MMETSP1137-20121227|5507_1  [L=445]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   1.7e-110  367.4   0.0   2.2e-110  367.1   0.0    1.0  1  TIGR01127 ilvA_1Cterm: threonine dehydratase
    2.1e-79  265.2   0.0    2.6e-79  264.9   0.0    1.0  1  TIGR01124 ilvA_2Cterm: threonine ammonia-lyase, biosynthetic
    4.6e-79  263.5   0.9    5.8e-79  263.1   0.6    1.1  1  TIGR02991 ectoine_eutB: ectoine utilization protein EutB
    8.4e-70  233.4   0.0      1e-69  233.1   0.0    1.0  1  TIGR02079 THD1: threonine dehydratase
    1.4e-16   58.5   0.0    2.9e-16   57.5   0.0    1.4  1  TIGR01136 cysKM: cysteine synthases
    1.5e-13   48.8   0.0    3.1e-12   44.4   0.0    2.2  1  TIGR01138 cysM: cysteine synthase B
    2.3e-13   47.9   0.0    4.3e-13   47.0   0.0    1.4  1  TIGR01139 cysK: cysteine synthase A
    3.4e-13   47.2   0.0    2.9e-12   44.1   0.0    2.3  1  TIGR03945 PLP_SbnA_fam: 2,3-diaminopropionate biosynthesis protein SbnA
    4.6e-11   40.3   0.0    4.5e-07   27.2   0.0    2.2  2  TIGR00260 thrC: threonine synthase
    7.4e-09   32.6   0.0    7.8e-08   29.2   0.0    2.1  1  TIGR01137 cysta_beta: cystathionine beta-synthase
    3.1e-05   21.1   0.9      0.004   14.1   0.0    2.7  3  TIGR00263 trpB: tryptophan synthase, beta subunit
    5.1e-05   19.8   0.1     0.0001   18.8   0.1    1.4  1  TIGR03528 2_3_DAP_am_ly: diaminopropionate ammonia-lyase
    0.00011   19.0   0.1    0.00072   16.2   0.1    2.1  2  TIGR02035 D_Ser_am_lyase: D-serine ammonia-lyase
     0.0015   15.7   0.2      0.003   14.7   0.1    1.4  1  TIGR01275 ACC_deam_rel: pyridoxal phosphate-dependent enzymes, D-cysteine desulfhydrase family
     0.0019   14.8   0.0        0.2    8.2   0.0    2.3  2  TIGR01415 trpB_rel: pyridoxal-phosphate dependent TrpB-like enzyme
     0.0025   14.5   0.0     0.0041   13.8   0.0    1.2  1  TIGR03844 cysteate_syn: cysteate synthase
     0.0031   14.2   0.2     0.0071   13.0   0.2    1.5  1  TIGR01747 diampropi_NH3ly: diaminopropionate ammonia-lyase family


Domain annotation for each model (and alignments):
>> TIGR01127  ilvA_1Cterm: threonine dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  367.1   0.0    9e-113  2.2e-110       3     374 ..      55     429 ..      53     436 .. 0.96

  Alignments for each domain:
  == domain 1    score: 367.1 bits;  conditional E-value: 9e-113
   TIGR01127   3 leksstlsditgaevylklenlqktGsfkirGalnkiaklseeekkrGvvaasaGnhaqGvalaakvfgikakivmPesaplskvkatksyGaeviLhGadfDeayklaeelaeeegrvfvhafdDefviaGqGtlgleiledlpdvdtvivPvGGGGLisGvasavkklnpevkviGveaeaapslveslkegkikavesvktiaDGiavkkpgdltfeivkelvDevvavdeeeiakaillLlerakivaegaGavgvaavlee.kvd...vkgkkvavvvsGGnidlnllekiiekgLvksgrkvkietvlkDkPGaLkklleviaekranivkiehdrlskeialgaakvelelevkgkehleellktlrdk 374
                  e s+ ls+ tg ++ylk e  q tGsfk rGa n +  l ++e++rGv+aasaGnha   +    +  i+ ++ mP  ap++kv++ +++Ga+v+LhG+++ ea ++ ++  e +g+ +++ fdD++++aG Gtlg+e+le++pd ++++vPvGG GLi+Gva+avk+lnp+vkviGve     s++++l++g ++   s +t+aDG+av ++g+ +f ++++ vDe+v+v+e e+a a+l+L+e++k+++eg Ga+g+aa+l    +d    k+k v+  ++GGnid+++l ++ie+gL  +gr++++ + + D+PG + + + v+a+ +a + +i+h+r     ++++  ++  le+ g+eh ee+ ++lr+k
  MMETSP1137-20121227|5507_1  55 CELSHWLSKTTGCQLYLKHEQQQFTGSFKERGARNALLSLPHDERHRGVIAASAGNHALALSWHGPQLDIPVTVCMPVTAPMAKVDKCRAFGANVVLHGQHILEAREHTQRP-EYDGMRYINGFDDPEIVAGAGTLGMEMLEQVPDAEVIVVPVGGAGLIAGVALAVKTLNPNVKVIGVEPTRCASFTAALEAGEPVPFVSSSTLADGLAVPQVGPHAFAVARHWVDEIVQVSERELAVAMLRLVENNKVIVEGGGAAGLAALLPGgPLDrddIKDKVVVAPLCGGNIDTTMLGRVIERGLSADGRLLRLVSPVSDRPGGIAEWARVVADLGASVKDIFHERAWLYSSVDQVLIKAVLETSGHEHNEEVIRELRKK 429
                 6789*******************************************************************************************************99875.6789***************************************************************************************************************************************************7424552126666677779*****************************************************************************************9986 PP

>> TIGR01124  ilvA_2Cterm: threonine ammonia-lyase, biosynthetic
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  264.9   0.0   1.1e-81   2.6e-79      10     389 ..      45     430 ..      35     441 .. 0.91

  Alignments for each domain:
  == domain 1    score: 264.9 bits;  conditional E-value: 1.1e-81
   TIGR01124  10 rvyeaavetplekaaklserlknrvllkredlqpvfsfklrGaynkmaqlsaeqkakGviaasaGnhaqGvalsakklGvkavivmpettpeikvdavkafGgevvlhGenydeakakalelaqekgltfiapfddplviaGqGtvalellrqveedldavfvpvGGGGliaGvaalvkqllpeikvigveaedsaalkqaleaGervkldqvGlfadGvavkevGdetfrlckeylddivlvdtdevcaaikdvfedtravlepaGalalaGlkk..yvakkgiedktlvailsGanlnfdrlryvseraelGeqreallavtipeekGsllkfvevlGe.....rai.tefnyrladdekahifvGvqlaeeeerkellarleeag 389
                 r+ +  v t  e +++ls+  + +++lk e +q   sfk rGa n + +l+++++ +GviaasaGnha  ++  + +l +  ++ mp t+p  kvd ++afG++vvlhG+   ea++++++  + +g+ +i+ fddp ++aG Gt+++e+l+qv  d + + vpvGG GliaGva  vk l p++kvigve++ +a++++aleaGe+v + +   +adG av +vG ++f+++++++d+iv+v   e+  a+  + e+ + ++e  Ga +la l     +++++i+dk +va l+G n++   l  v er    + r   l   + +++G + ++++v+ +     ++i  e ++ ++  ++  i   ++++ +e+++e++++l+++ 
  MMETSP1137-20121227|5507_1  45 RIRGGVVRTQCELSHWLSKTTGCQLYLKHEQQQFTGSFKERGARNALLSLPHDERHRGVIAASAGNHALALSWHGPQLDIPVTVCMPVTAPMAKVDKCRAFGANVVLHGQHILEAREHTQR-PEYDGMRYINGFDDPEIVAGAGTLGMEMLEQVP-DAEVIVVPVGGAGLIAGVALAVKTLNPNVKVIGVEPTRCASFTAALEAGEPVPFVSSSTLADGLAVPQVGPHAFAVARHWVDEIVQVSERELAVAMLRLVENNKVIVEGGGAAGLAALLPggPLDRDDIKDKVVVAPLCGGNIDTTMLGRVIERGLSADGRLLRLVSPVSDRPGGIAEWARVVADlgasvKDIfHERAWLYSSVDQVLIKAVLETSGHEHNEEVIRELRKKY 430
                 556667889999*********************************************************************************************************9876.6789*****************************.899******************************************************************************************************************97522699************************************9999999*********9999886522111222145566788888888888888888888888888888764 PP

>> TIGR02991  ectoine_eutB: ectoine utilization protein EutB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  263.1   0.6   2.4e-81   5.8e-79       2     315 ..      35     350 ..      34     352 .. 0.94

  Alignments for each domain:
  == domain 1    score: 263.1 bits;  conditional E-value: 2.4e-81
   TIGR02991   2 slddieraaeriagrveetplveseslsellGvpvllklesrqttGsfklrGatnavlslsdaeraaGvvaastGnhGralayaakkegvravicmselvpqnkvdeirrlGaevrivGrsqddaqeeverlvkerGlvmlppfdhadivaGqGtlglevveqvpdlalvlvplsGGGlasGvavavkalkpatrviGvsmerGaamkaslkaGrpvlveelptladslGGGiGldnrvtfalckelldeivllsedeiaagirhayaeereiveGaGavGiaallaG.kik...vkGpivvl.vsGrnidmdlhkrii 315
                  ++d+ ra++ri g v +t    s+ ls+ +G ++ lk e++q tGsfk rGa na+lsl  +er +Gv+aas+Gnh  al++   + ++++++cm    p+ kvd+ r +Ga+v + G+   +a+e  +r   + G+  +  fd+++ivaG Gtlg+e++eqvpd+++++vp+ G Gl++Gva avk+l+p+++viGv   r a++ a+l+aG pv      tlad l   +      +fa++++ +deiv +se e+a ++     +++ iveG Ga G+aall G  ++   +k ++vv  + G nid  +  r+i
  MMETSP1137-20121227|5507_1  35 KFEDVVRASHRIRGGVVRTQCELSHWLSKTTGCQLYLKHEQQQFTGSFKERGARNALLSLPHDERHRGVIAASAGNHALALSWHGPQLDIPVTVCMPVTAPMAKVDKCRAFGANVVLHGQHILEAREHTQRPEYD-GMRYINGFDDPEIVAGAGTLGMEMLEQVPDAEVIVVPVGGAGLIAGVALAVKTLNPNVKVIGVEPTRCASFTAALEAGEPVPFVSSSTLADGLA--VPQVGPHAFAVARHWVDEIVQVSERELAVAMLRLVENNKVIVEGGGAAGLAALLPGgPLDrddIKDKVVVApLCGGNIDTTMLGRVI 350
                 6799*******************************************************************************************************************************9988.*******************************************************************************************996..55566789**********************************************87333322355555543389*****99998888 PP

>> TIGR02079  THD1: threonine dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  233.1   0.0   4.3e-72     1e-69       1     344 [.      37     378 ..      37     393 .. 0.94

  Alignments for each domain:
  == domain 1    score: 233.1 bits;  conditional E-value: 4.3e-72
   TIGR02079   1 ediekakkrlkevvketPlqknerlsekykaeiylkredlqevrsyklrGaynklkqlsdeelekgvvcasaGnhaqGvayacrklgvkgtvfmPvttPkqkvdkvklfGgefievilvGdtfdeaaaaakkavekegktlipPfddkdiieGqgtvaveileqleeekidlvlvpvGGGGlisGvtsylkekskktkiigvePeGapslkaslkagevvtldkidkfvdGaavkrvGdlnfkalkkvvdevtlveegavcstildlynkegivaePaGalsiaalee...ls.eeikgktvvcvvsGgnndierleeikersllyeGlkhyflvkfpqraGalrefl 344
                 ed+ +a +r++  v +t  + ++ ls+++++++ylk e  q   s+k rGa n+l +l ++e+++gv+ asaGnha  +++   +l +  tv mPvt+P  kvdk + fG    +v+l G+   ea  ++ +  e +g ++i+ fdd++i++G gt+++e+leq++++  ++++vpvGG Gli+Gv+  +k+  ++ k+igveP+  +s++a+l+age+v +     + dG av +vG  +f+++++ vde+++v+e ++ +++l l +++ +++e  Ga  +aal     l+ ++ik+k vv+ + Ggn d + l  + er l  +G    ++  ++ r+G + e+ 
  MMETSP1137-20121227|5507_1  37 EDVVRASHRIRGGVVRTQCELSHWLSKTTGCQLYLKHEQQQFTGSFKERGARNALLSLPHDERHRGVIAASAGNHALALSWHGPQLDIPVTVCMPVTAPMAKVDKCRAFGA---NVVLHGQHILEAREHT-QRPEYDGMRYINGFDDPEIVAGAGTLGMEMLEQVPDA--EVIVVPVGGAGLIAGVALAVKTLNPNVKVIGVEPTRCASFTAALEAGEPVPFVSSSTLADGLAVPQVGPHAFAVARHWVDEIVQVSERELAVAMLRLVENNKVIVEGGGAAGLAALLPggpLDrDDIKDKVVVAPLCGGNIDTTMLGRVIERGLSADGRLLRLVSPVSDRPGGIAEWA 378
                 58999*********************************************************************************************************7...689***9988876655.556779******************************6..9*******************************************************************************************************************8522233499********************************99889999999999888765 PP

>> TIGR01136  cysKM: cysteine synthases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.5   0.0   1.2e-18   2.9e-16      15     269 ..      61     316 ..      54     339 .. 0.74

  Alignments for each domain:
  == domain 1    score: 57.5 bits;  conditional E-value: 1.2e-18
   TIGR01136  15 lseelkaevlvKlEsrnPsgSvKdRialsmildAekrgllkkgktiieatSGNtGiaLAmvaaakgyklilvmpetmslERrkllkayGaelvlteaeegmkgaiekakelaee.epekyvllkqfeNpaNpeaHrkttgpEilkdtdgkidafvagvGtgGtitGvgrvlkekkpnvkivavePaespvlseg....kpgphkiqgi.gag.fiPki....l..deelldevikvededaietarrlakeegilvGiSsGaavaaal 269
                 ls+ +  ++++K E+++ +gS K R a + +l+  +++   + + +i a +GN  +aL   + +    ++++mp t+ + + +  +a+Ga++vl  ++      i +a+e +++ e + + +++ f+ p+ + a   t g+E+l+++  + +++v  vG +G i Gv+ ++k+ +pnvk+++veP++ +  + +    +p p     +  +g  +P++    +   ++ +de+++v++++    + rl++++ ++v    Gaa  aal
  MMETSP1137-20121227|5507_1  61 LSKTTGCQLYLKHEQQQFTGSFKERGARNALLSLPHDE---RHRGVIAASAGNHALALSWHGPQLDIPVTVCMPVTAPMAKVDKCRAFGANVVLHGQH------ILEAREHTQRpEYDGMRYINGFDDPEIV-AGAGTLGMEMLEQVP-DAEVIVVPVGGAGLIAGVALAVKTLNPNVKVIGVEPTRCASFTAAleagEPVPFVSSSTlADGlAVPQVgphaFavARHWVDEIVQVSERELAVAMLRLVENNKVIVEG-GGAAGLAAL 316
                 56777899********************9999877765...45569************************************************7543......5555555544123345568888888754.568899********9.6799*********************************98876665544444444333220222124443222241156789******9999777777777777776643.444444443 PP

>> TIGR01138  cysM: cysteine synthase B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.4   0.0   1.3e-14   3.1e-12      20     204 ..      64     240 ..      50     344 .. 0.73

  Alignments for each domain:
  == domain 1    score: 44.4 bits;  conditional E-value: 1.3e-14
   TIGR01138  20 eedsevlvklegnnpaGsvkdrpalsmiveaekrGeikeGdvlieatsGntGialamvaalkGykvkllmpdnvseerkaalkayGaelilvdkeeGmeGardlarelvrkgeek.lldqfnnpdnpkahytstGieiwqqtkGrithfvsslGttGtimGvsrflkeqnpavqivGlqpaegsai 204
                  ++ ++++k e +  +Gs k+r a   +++  +  e +    +i a++Gn  +al+  +  + ++v++ mp      +    +a+Ga+++l  +   +  ar+ +++   ++++  +++ f++p+   a   + G+e+ +q        v  +G +G i Gv+  +k  np+v+++G++p+   + 
  MMETSP1137-20121227|5507_1  64 TTGCQLYLKHEQQQFTGSFKERGARNALLSLPHD-ERHR--GVIAASAGNHALALSWHGPQLDIPVTVCMPVTAPMAKVDKCRAFGANVVLHGQ--HILEAREHTQR--PEYDGMrYINGFDDPEI-VAGAGTLGMEMLEQVPDA-EVIVVPVGGAGLIAGVALAVKTLNPNVKVIGVEPTRCASF 240
                 47889******************99888765443.3333..4899*******************************************999654..45556665554..34555449999999975.678899********9765.567889****************************987663 PP

>> TIGR01139  cysK: cysteine synthase A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.0   0.0   1.8e-15   4.3e-13      17     283 ..      63     334 ..      55     340 .. 0.72

  Alignments for each domain:
  == domain 1    score: 47.0 bits;  conditional E-value: 1.8e-15
   TIGR01139  17 eeakaevlvkleslnPsssvkdrialamiedaekegllkkgktiveatsGntGialamvaaargykliltmpetmslerrkllkayGaelvLtdgaegmkgaiekaeelv...eetpnkylllkqfenpanpeihrkttapeilkdldgkldafvagvGtGGtitGvgevlkekkpdikvvavePaespvlsgg....kpgphkiqGigag..fiPkv......Ldkevidevikvsdee.aietarrlakeeGilvGissGaavaaal....kvakklekdkkivv 283
                 + +  ++++k e+++ ++s k+r a + + +  +++     + ++ a +Gn  +al+  + +    ++++mp t  + +    +a+Ga++vL          i +a+e +   e ++ +y  ++ f++p    +   t + e+l+++ ++ +++v  vG  G i+Gv+ ++k+ +p++kv++veP++ + ++ +    +p p     + a+   +P+v      + ++ +de+++vs+ e a+++ r + ++  i+ G  +Gaa  aal     + ++  kdk++v+
  MMETSP1137-20121227|5507_1  63 KTTGCQLYLKHEQQQFTGSFKERGARNALLSLPHDER---HRGVIAASAGNHALALSWHGPQLDIPVTVCMPVTAPMAKVDKCRAFGANVVLHGQ------HILEAREHTqrpEYDGMRY--INGFDDPEIV-AGAGTLGMEMLEQVPDA-EVIVVPVGGAGLIAGVALAVKTLNPNVKVIGVEPTRCASFTAAleagEPVPFVSSSTLADglAVPQVgphafaVARHWVDEIVQVSERElAVAMLRLVENNKVIVEG--GGAAGLAALlpggPLDRDDIKDKVVVA 334
                 5567899******************999988776653...4559************************************************643......3444444430004455556..8899988755.567899*******9875.8999*******************************987655444333666655444333322245542222335678999999999876255555555555555544..445444444111145566556666665 PP

>> TIGR03945  PLP_SbnA_fam: 2,3-diaminopropionate biosynthesis protein SbnA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.1   0.0   1.2e-14   2.9e-12      17     268 ..      62     314 ..      52     335 .. 0.79

  Alignments for each domain:
  == domain 1    score: 44.1 bits;  conditional E-value: 1.2e-14
   TIGR03945  17 fedekvelfaKlEglnpagSvKdrtAlallekaikegeikpgttiiESsSGnlaiaLamvcaalGlkficvvDpkiseanlkllralgaevevveekdetggyLkaRlarvrellaeipdavwlNQYaneanaeahyettaeeileelkevdylfvgvsttGtlaGvarrlrekspevkvvavDavGSvifggepgk.RlipGlGasv......v....pel..ldeslidevvkvseletvaacrelleregilaGgSsGtvva 268
                  +++ ++l++K E+   +gS K r A++ l +  ++ +   +  +i  s Gn a+aL+    +l + +++ +   +  a++   ra+ga+v++          L+aR ++      e + + ++N + +++ ++    t + e+le++++ ++++v+v+ +G +aGva +++  +p+vkv++v+ +    f ++ +    +p + +s+      v    p+   ++++ +de+v+vse+e ++a  +l+e++ +++ g  ++ +a
  MMETSP1137-20121227|5507_1  62 SKTTGCQLYLKHEQQQFTGSFKERGARNALLSLPHDER---HRGVIAASAGNHALALSWHGPQLDIPVTVCMPVTAPMAKVDKCRAFGANVVLHG-----QHILEAREHT---QRPEYDGMRYINGFDDPEIVAGA-GTLGMEMLEQVPDAEVIVVPVGGAGLIAGVALAVKTLNPNVKVIGVEPTRCASFTAALEAgEPVPFVSSSTladglaVpqvgPHAfaVARHWVDEIVQVSERELAVAMLRLVENNKVIVEGGGAAGLA 314
                 4567799********************99999888865...6789************************9999999999***********98632.....3478888554...4467889999******9977655.899********************************************998888877654423455555443111111201113332256778999999999998888888888776665554444444 PP

>> TIGR00260  thrC: threonine synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.1   0.0   0.00014     0.034      37     105 ..      66     131 ..      51     150 .. 0.76
   2 !   27.2   0.0   1.9e-09   4.5e-07     164     308 ..     184     317 ..     154     345 .. 0.90

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 0.00014
   TIGR00260  37 aenlyvkelfhgPtlaFKDrglqfvavll.tkalelgnetvlcAtsGdtgaaaaealagkanvkvvvLyP 105
                 + +ly+k++    t++FK rg     ++l +   ++    v+ A+ G+ + a+   +  + ++ v v +P
  MMETSP1137-20121227|5507_1  66 GCQLYLKHEQQQFTGSFKERG---ARNALlSLPHDERHRGVIAASAGNHALALS-WHGPQLDIPVTVCMP 131
                 349******************...5555505555666669********998876.555566666666666 PP

  == domain 2    score: 27.2 bits;  conditional E-value: 1.9e-09
   TIGR00260 164 eaqktyafeiveqlgkespdkvvvpvp.sgnfgailkGflekkelglpieklaiaaegaadivrrflksgdlepkedkeTlstAmdignpsnveralelarrslgnledlkesvsdeeileaikklaeeegyllephtavavaalk 308
                 ++  t+  e++eq++  + + +vvpv+ +g++  +  +    k+l+ +++ ++++++ +    ++ l+ g+ +p  + +Tl+  +++  p   + a ++ar+   ++ ++    s+ e   a+ +l+e++++++e  +a+++aal+
  MMETSP1137-20121227|5507_1 184 AGAGTLGMEMLEQVP--DAEVIVVPVGgAGLIAGVALA---VKTLNPNVKVIGVEPTRC-ASFTAALEAGEPVPFVSSSTLADGLAV--PQVGPHAFAVARHWVDEIVQV----SERELAVAMLRLVENNKVIVEGGGAAGLAALL 317
                 455588899999999..999*******99999888766...8999999***********.6677778******************98..788999********9999999....*****************************986 PP

>> TIGR01137  cysta_beta: cystathionine beta-synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.2   0.0   3.2e-10   7.8e-08      20     281 ..      61     317 ..      56     343 .. 0.75

  Alignments for each domain:
  == domain 1    score: 29.2 bits;  conditional E-value: 3.2e-10
   TIGR01137  20 vskglkaevlakveffnaGGsvkdrialrmiedaeksGrlkpgdtliePtsGntGiGlalvaaikGykciivlPekvseekvdvlkalGaeivrtPtaaafdsPesyigvakrlekeipgavildqyanasnPlahydttgeeileqlegkldalvagvGtGGtitGiarklkekedkvrivGadPeG..si...laepeelnktektdykveGiGydfi.Ptv..ldrkvvdeiiktddkesfkmarrlikeegllvgGssGsavvaal 281
                 +sk   ++++ k e     Gs k+r a++ +    ++ r      +i   +Gn  + l+  + +    + + +P      kvd  +a+Ga++v    ++  ++ e +       + e +g   ++ +++++  +a   t g e+leq+ +  + +v  vG  G i+G+a  +k+ +++v+++G++P    s    l  +e +      + + +G+    + P++  + r+ vdei++++++e      rl++++ ++v G   + ++a l
  MMETSP1137-20121227|5507_1  61 LSKTTGCQLYLKHEQQQFTGSFKERGARNALLSLPHDERH---RGVIAASAGNHALALSWHGPQLDIPVTVCMPVTAPMAKVDKCRAFGANVVLHGQHIL-EARE-H-----TQRPEYDGMRYINGFDDPEI-VAGAGTLGMEMLEQVPD-AEVIVVPVGGAGLIAGVALAVKTLNPNVKVIGVEPTRcaSFtaaLEAGEPVPFVSS-STLADGLAVPQVgPHAfaVARHWVDEIVQVSERELAVAMLRLVENNKVIVEGGGAAGLAALL 317
                 5677889999999999999999999999988888887653...458999999999999999999999999999999999999999999999998765543.2222.2.....23468888888888888864.5677899********98.589999*****************************751133111334444443333.346677765433265422579************988888899****9999876555555544 PP

>> TIGR00263  trpB: tryptophan synthase, beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.0   1.7e-05     0.004      55     151 ..      57     149 ..      38     163 .. 0.82
   2 ?   -0.0   0.1      0.32        77     216     253 ..     195     235 ..     182     247 .. 0.71
   3 ?    3.5   0.0     0.028       6.7     293     372 ..     256     338 ..     245     348 .. 0.80

  Alignments for each domain:
  == domain 1    score: 14.1 bits;  conditional E-value: 1.7e-05
   TIGR00263  55 faknlskklggakiylkredllhtGahkinnalgqallakrlGkkriiaetGaGqhGvatataaallglecevymGaedverqklnvfrmellgakv 151
                  ++ lsk++g +++ylk e+ + tG+ k   a    l   +  ++r +  + aG h +a +  + +l++ ++v m           v + +  ga+v
  MMETSP1137-20121227|5507_1  57 LSHWLSKTTG-CQLYLKHEQQQFTGSFKERGARNALLSLPHDERHRGVIAASAGNHALALSWHGPQLDIPVTVCMPV---TAPMAKVDKCRAFGANV 149
                 5566788886.*****************999988888788889999888899*********************9964...44555566666666665 PP

  == domain 2    score: -0.0 bits;  conditional E-value: 0.32
   TIGR00263 216 grlPda..viacvGGGsnaiGifaafie.deeveligveag 253
                 +++Pda  ++  vGG     G+  a    +++v++igve++
  MMETSP1137-20121227|5507_1 195 EQVPDAevIVVPVGGAGLIAGVALAVKTlNPNVKVIGVEPT 235
                 56676432667778777777765543224888999999975 PP

  == domain 3    score: 3.5 bits;  conditional E-value: 0.028
   TIGR00263 293 hsvsaGldypgvgPehaalaetgraeyeaitdeealealkllskeeGiipalesshalaalek...lapklkkdeivvvnlsG 372
                  +++ Gl  p vgP+  a+a +   e ++++++e   a+ +l++++ +i     +  laal     l+ +  kd++vv  l+G
  MMETSP1137-20121227|5507_1 256 STLADGLAVPQVGPHAFAVARHWVDEIVQVSERELAVAMLRLVENNKVIVEGGGAAGLAALLPggpLDRDDIKDKVVVAPLCG 338
                 56788*********8888888888899*********************99888888899887611134445589999999988 PP

>> TIGR03528  2_3_DAP_am_ly: diaminopropionate ammonia-lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.1   4.3e-07    0.0001     117     347 ..     104     312 ..      98     318 .. 0.75

  Alignments for each domain:
  == domain 1    score: 18.8 bits;  conditional E-value: 4.3e-07
   TIGR03528 117 vtatdGnhGrGvawaanklgqksvvymPkGsaqerlenirkeGaeatitdlnyddavrlaakkaeekGwvvvqdtaweGyeeiPtwimqGyttlalealeqlkelgvekpthvllqaGvGslagavlGylaskfgeerpiivivepdkadclyrsavaddGeihlvtGdlatimaGlacGepntigweilrdyasafvscedsvaakGmrilgaPlkgdervisGesGavg 347
                 ++a+ Gnh   ++w   +l+    v mP  +   ++++ r+ Ga++++      +a r  +++ e  G   +     +G+++ P  i+ G +tl +e leq+   +v     v+   G G +ag  l     + +  +p++ ++  + + c   +a+ + Ge++      +t+  Gla  +    ++ + r+  ++ v +++    + + +    l ++++vi    Ga+g
  MMETSP1137-20121227|5507_1 104 IAASAGNHALALSWHGPQLDIPVTVCMPVTAPMAKVDKCRAFGANVVLHGQHILEA-REHTQRPEYDGMRYI-----NGFDD-P-EIVAGAGTLGMEMLEQVPDAEVI----VVPVGGAGLIAGVAL-----AVKTLNPNVKVIGVEPTRCASFTAALEAGEPVPFVS-SSTLADGLAVPQVGPHAFAVARHWVDEIVQVSE----RELAVAMLRLVENNKVIVEGGGAAG 312
                 78999*****************************************9999888776.556667778886665.....79988.5.5899************9966654....555566666666432.....334444555555555566887888888999875443.4799****************9999999887554....3444444444455666665566655 PP

>> TIGR02035  D_Ser_am_lyase: D-serine ammonia-lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.0       3.3     8e+02      89     114 ..      63      87 ..      51      93 .. 0.73
   2 !   16.2   0.1     3e-06   0.00072     157     384 ..     105     314 ..      98     318 .. 0.81

  Alignments for each domain:
  == domain 1    score: -3.7 bits;  conditional E-value: 3.3
   TIGR02035  89 qelsGrlllkkdshlpisGsikarGG 114
                 +    +l+lk++++   +Gs k rG 
  MMETSP1137-20121227|5507_1  63 KTTGCQLYLKHEQQ-QFTGSFKERGA 87 
                 45556899998766.68999999996 PP

  == domain 2    score: 16.2 bits;  conditional E-value: 3e-06
   TIGR02035 157 vGstGnlGlsiGiisaalGfkvtvhmsadakkwkkdklrskGvtvveyesdyskaveeGrkeaeadplsyfvddeksrdlflGyavaasrlkkqldkkgikvdkehplfvylpcGvGGgpGGvafGlkllfgddvhvffaepthspcmllGlytGlhekisvqdiGidnltaadGlavgrpsGlvGrllerlldGiytvddeklydllallaesedkrlepsalagla 384
                   s+Gn  l++   + +l   vtv m   a   k dk r+ G +vv + +   +a e+ ++  e d + y ++  +  ++  G    +  + +q      ++d+e   ++ +p G  G   Gva  +k l + +v v+ +ept++      l++G    +      + + t adGlav +       + ++ +d i  v++++l   +  l e++++ +e    agla
  MMETSP1137-20121227|5507_1 105 AASAGNHALALSWHGPQLDIPVTVCMPVTAPMAKVDKCRAFGANVVLHGQHILEAREHTQR-PEYDGMRY-INGFDDPEIVAGAGTLGMEMLEQ------VPDAE---VIVVPVGGAGLIAGVALAVKTL-NPNVKVIGVEPTRCASFTAALEAGEP--VP----FVSSSTLADGLAVPQVGPHAFAVARHWVDEIVQVSERELAVAMLRLVENNKVIVEGGGAAGLA 314
                 5799**********************************************99999888765.57888877.45555566766766555554444......45555...4568***************986.789**********9999999999954..43....36789********9999999899999999*****99999765555556666777877777765 PP

>> TIGR01275  ACC_deam_rel: pyridoxal phosphate-dependent enzymes, D-cysteine desulfhydrase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.1   1.2e-05     0.003     179     215 ..     200     236 ..     187     245 .. 0.83

  Alignments for each domain:
  == domain 1    score: 14.7 bits;  conditional E-value: 1.2e-05
   TIGR01275 179 fdsivvaaGsgGtiaGlslGlsaLkeevesvgvavsr 215
                  + ivv +G +G iaG++l +++L+++v+ +gv+ +r
  MMETSP1137-20121227|5507_1 200 AEVIVVPVGGAGLIAGVALAVKTLNPNVKVIGVEPTR 236
                 4679*************************99887555 PP

>> TIGR01415  trpB_rel: pyridoxal-phosphate dependent TrpB-like enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.2   0.0   0.00083       0.2      83     156 ..      65     138 ..      49     150 .. 0.85
   2 ?    3.9   0.1     0.016       3.9     228     291 ..     187     242 ..     152     246 .. 0.75

  Alignments for each domain:
  == domain 1    score: 8.2 bits;  conditional E-value: 0.00083
   TIGR01415  83 tkariyyksesvsptGshkintaiaqayyakkeGvkrlvtetGaGqWGsalslaaalldlkvkvfmvrvsfkqk 156
                 t  ++y+k+e+ + tGs k   a        ++  +r v  + aG    als  +  ld+ v+v m  ++  +k
  MMETSP1137-20121227|5507_1  65 TGCQLYLKHEQQQFTGSFKERGARNALLSLPHDERHRGVIAASAGNHALALSWHGPQLDIPVTVCMPVTAPMAK 138
                 44899****************99988888889999999999***********************9977665555 PP

  == domain 2    score: 3.9 bits;  conditional E-value: 0.016
   TIGR01415 228 tviGleakkqleeagekPdvivgcvGGGsnfaglafPfvadklsGkedlkfiaaeskaaPkltk 291
                   +G+e+ +q++ a    +viv  vGG    ag+a+ +   +l+ +  +k+i +e++ + ++t+
  MMETSP1137-20121227|5507_1 187 GTLGMEMLEQVPDA----EVIVVPVGGAGLIAGVALAV--KTLNPN--VKVIGVEPTRCASFTA 242
                 55678888877776....589999***99999999764..456654..8999999999999885 PP

>> TIGR03844  cysteate_syn: cysteate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.0   1.7e-05    0.0041      92     151 ..      74     134 ..      63     142 .. 0.85

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 1.7e-05
   TIGR03844  92 gallktcsfkelealptlqrlkek.gkkvlvvasaGntgrafaevsaltgkpvvlvvPesa 151
                 + +  t+sfke  a  +l  l     ++ ++ asaGn + a++    + + pv + +P  a
  MMETSP1137-20121227|5507_1  74 EQQQFTGSFKERGARNALLSLPHDeRHRGVIAASAGNHALALSWHGPQLDIPVTVCMPVTA 134
                 556679************999776255566678**********************999765 PP

>> TIGR01747  diampropi_NH3ly: diaminopropionate ammonia-lyase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   0.2     3e-05    0.0071      98     297 ..     104     285 ..      97     318 .. 0.68

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 3e-05
   TIGR01747  98 vtatdGnhGrGvawaaeklGqkavvympkGsaqeraeniekeGaevtitdlnyddavrlankmaqekgwvlvqdtaweGyekiptwimqGyatlaveaveqlrelgselpthvllqaGvGslaGavlGylveafsenipniivveadkadclyqsavkddGeir.lvdGdlatimaGlacGepniisfeilrnntslfisa 297
                 ++a+ Gnh   ++w   +l     v mp  + + ++++ +  Ga+v+++     +    a++++q+ ++  ++    +G+++ p  i+ G +tl +e  eq+ + +      v+   G G +aG  l   v+++++n +++i ve+ +  c   +a  + Ge++ +v+   +t+  Gla  +  + +f + r+     + +
  MMETSP1137-20121227|5507_1 104 IAASAGNHALALSWHGPQLDIPVTVCMPVTAPMAKVDKCRAFGANVVLHGQHILE----AREHTQRPEYDGMRY--INGFDD-P-EIVAGAGTLGMEMLEQVPDAE----VIVVPVGGAGLIAGVALA--VKTLNPN-VKVIGVEPTR--CASFTAALEAGEPVpFVS--SSTLADGLAVPQVGPHAFAVARHWVDEIVQV 285
                 67899*****************************************998655444....555666655554443..467776.3.478899999999999988877....344445677777776553..5555554.4566677765..544455555777652443..3677778888777777777777766666654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (445 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       196  (0.0477816); expected 82.0 (0.02)
Passed bias filter:                      175  (0.0426621); expected 82.0 (0.02)
Passed Vit filter:                        37  (0.00901999); expected 4.1 (0.001)
Passed Fwd filter:                        17  (0.00414432); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              17  [number of targets reported over threshold]
# CPU time: 0.64u 0.19s 00:00:00.83 Elapsed: 00:00:00.83
# Mc/sec: 707.65
//
Query:       MMETSP1137-20121227|5508_1  [L=141]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (141 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       111  (0.02706); expected 82.0 (0.02)
Passed bias filter:                       98  (0.0238908); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.17s 00:00:00.33 Elapsed: 00:00:00.37
# Mc/sec: 502.99
//
Query:       MMETSP1137-20121227|5509_1  [L=675]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   1.1e-201  668.7   0.1   1.4e-201  668.4   0.0    1.1  1  TIGR01241 FtsH_fam: ATP-dependent metallopeptidase HflB
    7.8e-76  253.4   0.4    1.1e-75  252.8   0.3    1.2  1  TIGR01242 26Sp45: 26S proteasome subunit P45 family
    1.5e-68  229.7   0.1    1.8e-68  229.3   0.1    1.2  1  TIGR01243 CDC48: AAA family ATPase, CDC48 subfamily
    2.6e-36  123.2   0.1    4.1e-36  122.6   0.1    1.3  1  TIGR03689 pup_AAA: proteasome ATPase
    1.3e-05   22.2   0.0    2.4e-05   21.3   0.0    1.3  1  TIGR00382 clpX: ATP-dependent Clp protease, ATP-binding subunit ClpX
    3.5e-05   20.7   0.7    0.00046   17.0   0.1    2.3  2  TIGR00390 hslU: ATP-dependent protease HslVU, ATPase subunit
    0.00022   17.7   0.0    0.00037   17.0   0.0    1.3  1  TIGR03922 T7SS_EccA: type VII secretion AAA-ATPase EccA
    0.00028   17.8   0.1     0.0007   16.5   0.0    1.6  2  TIGR00635 ruvB: Holliday junction DNA helicase RuvB
      0.001   15.2   0.1      0.059    9.4   0.0    2.2  2  TIGR02639 ClpA: ATP-dependent Clp protease ATP-binding subunit ClpA
     0.0019   14.5   0.2     0.0035   13.6   0.1    1.3  1  TIGR00763 lon: ATP-dependent protease La
     0.0024   14.4   0.1      0.017   11.6   0.0    1.9  2  TIGR02902 spore_lonB: ATP-dependent protease LonB
     0.0027   15.5   0.4       0.01   13.7   0.1    2.0  2  TIGR02173 cyt_kin_arch: putative cytidylate kinase
     0.0031   14.4   0.0     0.0072   13.2   0.0    1.6  1  TIGR02881 spore_V_K: stage V sporulation protein K
     0.0069   13.7   0.0      0.014   12.7   0.0    1.4  1  TIGR02640 gas_vesic_GvpN: gas vesicle protein GvpN
     0.0076   13.0   0.1      0.056   10.1   0.0    2.2  3  TIGR02928 TIGR02928: orc1/cdc6 family replication initiation protein


Domain annotation for each model (and alignments):
>> TIGR01241  FtsH_fam: ATP-dependent metallopeptidase HflB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  668.4   0.0  5.1e-204  1.4e-201       4     495 ..     153     652 ..     150     653 .. 0.95

  Alignments for each domain:
  == domain 1    score: 668.4 bits;  conditional E-value: 5.1e-204
   TIGR01241   4 evllsllplilllvglfllflrq..akgaggsrifslgkskaklleeekvkvtfkdvaGideakeelveivdfLknpkkftklGakiPkGvllvGpPGtGktLlakavaGeagvpffsisGsdfvemfvGvGasrvrDlfeqakknaPciifiDeiDavGrkrgag....lgggndereqtLnqlLvemDGfetnegvivlaatnrpdvLDkaLlrPGrfDrqvvvdkPdlkgreeilkvhakkvklaeevdlkkvarrtpGfsGadlanlvneaallaarknkkevtlkeleeavdrviaGlekksrvisekekklvayheaGhalvgllvkeadkvkkvtiiprGq.alGvtlslPee...dklllskkellakiavllgGrvaeeiifg..evttGasnDlkkatkiaramvtelGms.eklgavayeeeeeevllgkelkkekeyseetakeiDeevkriieeaykkakeilkekkeelellakeLleketiekeelkell 495
                 +vl +l + +l++ glf+l +r+  + g gg + ++lgksk+k+++e ++ vtf+dvaG+d  k el+e+v+fLknp kf++lGakiP+Gv++ GpPGtGktLla+avaGeagvpf+s sGs+fvemfvGvGa+r+r lf +akknaPci+fiDeiDavGr+r+ g    +gggndereqtLnq+L+emDGf++n gvivlaatnr+d+LD+aLlrPGrfDr+v vd+Pd+kgr eilkvha+ + la+e+dl  va+rt+GfsGa l+nl+neaa++aar+nk+e++ +e++ a+dr ++Gl+k + +  +++++lvayheaGha++g+l+++ d+v+kvtiipr + a+G+tl++P+e   ++ l+sk+ l+ ++av+lgGrvaeeiifg  evttGasnDl+++ +iar+mv+++G s +klgav++e+ e++   g      ++ s et k iD+evk+i+ +ay+ +k+ l ++++ le l+++L++ket++ +e++el+
  MMETSP1137-20121227|5509_1 153 GVLANLAFPLLIIGGLFFLQRRNggMGGPGGMNPLDLGKSKSKIQMEPQTGVTFEDVAGCDASKFELTEVVEFLKNPAKFSALGAKIPRGVIMEGPPGTGKTLLARAVAGEAGVPFISASGSEFVEMFVGVGAARIRSLFSEAKKNAPCIVFIDEIDAVGRQRAGGnrggMGGGNDEREQTLNQILTEMDGFDGNSGVIVLAATNRADILDSALLRPGRFDRRVPVDLPDVKGRLEILKVHARGKPLAKELDLGIVAKRTTGFSGASLSNLLNEAAIVAARTNKTEISYTEVDYAIDRATVGLQKTTGTSFPNRQRLVAYHEAGHAVMGALTPDYDMVTKVTIIPRTNgAGGFTLFTPTEerlESGLYSKRYLKGQLAVALGGRVAEEIIFGeeEVTTGASNDLQQVRNIARRMVAQWGYSkDKLGAVSWESPEGNGGFG-----PQAASPETEKMIDAEVKEIVADAYRVCKQTLLDNRDLLEELTEMLIDKETVDFKEMQELV 652
                 67778877899999**9999988444555666799********************************************************************************************************************************8644457**********************************************************************************************************************************************************************************9*********995555679*************************999*************************9459*******877554444.....4689*****************************************************986 PP

>> TIGR01242  26Sp45: 26S proteasome subunit P45 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  252.8   0.3   4.2e-78   1.1e-75     112     362 ..     197     450 ..     186     452 .. 0.95

  Alignments for each domain:
  == domain 1    score: 252.8 bits;  conditional E-value: 4.2e-78
   TIGR01242 112 eveerpevsyediGGlekqlreireavelplkkpelfeevGieppkGvllyGppGtGktllakavaeetnatfirvvgselvkkyiGeGarlvrevfklakekapsiifideidaiaakrldss....tsGdrevqrtllqllaeldGfdprgnvkviaatnrldildpallrpGrfdrlievplpdleGrleilkihtrkmklaedvdleelaklteGasGadlkaivteaGmfaireerdkvtmedflkavek 362
                 ++e +  v++ed+ G +    e+ e+ve+ lk+p  f  +G + p+Gv++ GppGtGktlla+ava e+   fi   gse+v+ ++G Ga  +r +f  ak+ ap+i+fideida++ +r   +     +G+ e ++tl q+l+e+dGfd    v v+aatnr dild allrpGrfdr + v lpd++Grleilk+h+r   la+++dl  +ak t G+sGa l  +  ea + a r ++++++ +++  a+++
  MMETSP1137-20121227|5509_1 197 QMEPQTGVTFEDVAGCDASKFELTEVVEF-LKNPAKFSALGAKIPRGVIMEGPPGTGKTLLARAVAGEAGVPFISASGSEFVEMFVGVGAARIRSLFSEAKKNAPCIVFIDEIDAVGRQRAGGNrggmGGGNDEREQTLNQILTEMDGFDGNSGVIVLAATNRADILDSALLRPGRFDRRVPVDLPDVKGRLEILKVHARGKPLAKELDLGIVAKRTTGFSGASLSNLLNEAAIVAARTNKTEISYTEVDYAIDR 450
                 5667788********************97.9*****************************************************************************************9765112156899*****************************************************************************************************************999999986 PP

>> TIGR01243  CDC48: AAA family ATPase, CDC48 subfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  229.3   0.1   6.6e-71   1.8e-68     449     677 ..     203     436 ..     195     662 .. 0.84

  Alignments for each domain:
  == domain 1    score: 229.3 bits;  conditional E-value: 6.6e-71
   TIGR01243 449 nvkwediggleevkqelreavewplkakevfeklgirppkgvllfgppgtgktllakavatesganfiavrgpeilskwvgesekaireifrkarqaapaiifldeidaiapar......gadlseavtdrivnqllteldgleensdvvviaatnrpdildpallrpgrldrlilvpapdeearleifkihtrslplaedvdleelakktegytgadieavvreaalaalresv 677
                  v +ed+ g +  k el e ve+ lk++  f  lg + p+gv++ gppgtgktlla+ava e+g  fi+  g e +  +vg    +ir +f  a++ ap+i+f+deida+  +r      g   ++   ++ +nq+lte+dg++ ns+v+v+aatnr dild allrpgr+dr + v  pd + rlei+k+h+r  pla+++dl  +ak+t g++ga +  +  eaa+ a r   
  MMETSP1137-20121227|5509_1 203 GVTFEDVAGCDASKFELTEVVEF-LKNPAKFSALGAKIPRGVIMEGPPGTGKTLLARAVAGEAGVPFISASGSEFVEMFVGVGAARIRSLFSEAKKNAPCIVFIDEIDAVGRQRaggnrgGMGGGNDEREQTLNQILTEMDGFDGNSGVIVLAATNRADILDSALLRPGRFDRRVPVDLPDVKGRLEILKVHARGKPLAKELDLGIVAKRTTGFSGASLSNLLNEAAIVAARTNK 436
                 5899******************8.9*************************************************************************************987743222222334557889***************************************************************************************************99655 PP

>> TIGR03689  pup_AAA: proteasome ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  122.6   0.1   1.5e-38   4.1e-36     170     387 ..     195     402 ..     189     452 .. 0.84

  Alignments for each domain:
  == domain 1    score: 122.6 bits;  conditional E-value: 1.5e-38
   TIGR03689 170 elvleevPdvtyadiGGldsqieqirdavelPflhkelyreydlkpPkGvllyGPPGcGktliakavanslaekvaedgeaksyflnikGPellnkyvGeterqirliferarekaaegrPvvvffdemdslfrtr......GsGvssdvettvvPqllaeldGveslenviviGasnredlidPailrPGrldvkirierPdaeaaadilakyltedlPleed 387
                 ++ +e    vt++d+ G d    ++ + ve+ +++++ + + + k P+Gv++ GPPG+Gktl+a+ava            a   f++  G e+++ +vG    +ir +f+ a+++a    P +vf+de+d++ r r      G G   d     + q+l+e+dG +  + viv+ a+nr d++d a+lrPGr+d ++ ++ Pd ++  +il+ +   + Pl+++
  MMETSP1137-20121227|5509_1 195 KIQMEPQTGVTFEDVAGCDASKFELTEVVEF-LKNPAKFSALGAKIPRGVIMEGPPGTGKTLLARAVAGE----------AGVPFISASGSEFVEMFVGVGAARIRSLFSEAKKNA----PCIVFIDEIDAVGRQRaggnrgGMGGGNDEREQTLNQILTEMDGFDGNSGVIVLAATNRADILDSALLRPGRFDRRVPVDLPDVKGRLEILKVHARGK-PLAKE 402
                 556677778***********99999****96.67899******************************964..........3457**************************998876....**************994444334456678888899********************************************************9886543.55444 PP

>> TIGR00382  clpX: ATP-dependent Clp protease, ATP-binding subunit ClpX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3   0.0   8.9e-08   2.4e-05     121     198 ..     244     315 ..     238     324 .. 0.84

  Alignments for each domain:
  == domain 1    score: 21.3 bits;  conditional E-value: 8.9e-08
   TIGR00382 121 lliGptGsGktllaqtlakeldvpfaiadattlteaGyvGedvenillkllqaadydvekaekGiiyideidkiarks 198
                 ++ Gp G+Gktlla+++a e  vpf  a  + + e  +vG     i   l+ +     +k    i++ideid + r+ 
  MMETSP1137-20121227|5509_1 244 IMEGPPGTGKTLLARAVAGEAGVPFISASGSEFVEM-FVGVGAARI-RSLFSE----AKKNAPCIVFIDEIDAVGRQR 315
                 677***********************9999999996.999877665.456655....5677789**********9975 PP

>> TIGR00390  hslU: ATP-dependent protease HslVU, ATPase subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.1   1.7e-06   0.00046      46      91 ..     239     283 ..     235     299 .. 0.86
   2 ?    1.9   0.0     0.065        18     247     263 ..     299     315 ..     290     389 .. 0.86

  Alignments for each domain:
  == domain 1    score: 17.0 bits;  conditional E-value: 1.7e-06
   TIGR00390  46 vPknilmiGstGvGkteiarrlaklaeaPfikveatkftevGyvGr 91 
                 +P+ ++m G+ G Gkt +ar +a  a++Pfi    + f e+ +vG 
  MMETSP1137-20121227|5509_1 239 IPRGVIMEGPPGTGKTLLARAVAGEAGVPFISASGSEFVEM-FVGV 283
                 6999***********************************96.6664 PP

  == domain 2    score: 1.9 bits;  conditional E-value: 0.065
   TIGR00390 247 esGiifideidkiakkg 263
                    i+fideid + ++ 
  MMETSP1137-20121227|5509_1 299 APCIVFIDEIDAVGRQR 315
                 4579*******998765 PP

>> TIGR03922  T7SS_EccA: type VII secretion AAA-ATPase EccA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.0   1.3e-06   0.00037     314     393 ..     242     317 ..     223     375 .. 0.75

  Alignments for each domain:
  == domain 1    score: 17.0 bits;  conditional E-value: 1.3e-06
   TIGR03922 314 HlllaGPPGtGkttiArvvakiyaGlgvlrkpevrEvsRadligeyigeseaktnelidkaLgg...vlFlDEayaLvekrdg 393
                  +++ GPPGtGkt +Ar+va   aG+  +        s ++++  ++g  +a+   l  +a      ++F+DE+ a+  +r g
  MMETSP1137-20121227|5509_1 242 GVIMEGPPGTGKTLLARAVAGE-AGVPFI------SASGSEFVEMFVGVGAARIRSLFSEAKKNapcIVFIDEIDAVGRQRAG 317
                 57999**************975.787665......467899999999999999999998876533338999999988766443 PP

>> TIGR00635  ruvB: Holliday junction DNA helicase RuvB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0   2.6e-06    0.0007      33      95 ..     243     313 ..     230     316 .. 0.76
   2 ?   -3.2   0.1       2.6     7e+02     204     242 ..     611     649 ..     600     662 .. 0.73

  Alignments for each domain:
  == domain 1    score: 16.5 bits;  conditional E-value: 2.6e-06
   TIGR00635  33 vllyGPPGlGkttlakiiakelgvklkitsgpalek......pgDlaailtaleegd..vlfiDeihrlsk 95 
                 v++ GPPG Gkt la+ +a e gv    +sg ++        +  + +++++ +++   ++fiDei ++ +
  MMETSP1137-20121227|5509_1 243 VIMEGPPGTGKTLLARAVAGEAGVPFISASGSEFVEmfvgvgAARIRSLFSEAKKNApcIVFIDEIDAVGR 313
                 7899*********************9999999876522222234555666665555344999999998876 PP

  == domain 2    score: -3.2 bits;  conditional E-value: 2.6
   TIGR00635 204 rvrdfaqvkeekvinkkiakealeklkvdelGldelDrk 242
                  v d  +v +++ ++++  +e l+++ +d++ +d  +++
  MMETSP1137-20121227|5509_1 611 IVADAYRVCKQTLLDNRDLLEELTEMLIDKETVDFKEMQ 649
                 466777888888888888888888888888777665554 PP

>> TIGR02639  ClpA: ATP-dependent Clp protease ATP-binding subunit ClpA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.4   0.0   0.00022     0.059     488     526 ..     242     279 ..     219     284 .. 0.87
   2 ?    3.7   0.0     0.011       3.1     264     290 ..     286     312 ..     278     328 .. 0.81

  Alignments for each domain:
  == domain 1    score: 9.4 bits;  conditional E-value: 0.00022
   TIGR02639 488 gsflfvGptGvGktelakqLaeelgvellrfDmseymek 526
                 g  ++ Gp G Gkt la+++a e gv ++    se+ e 
  MMETSP1137-20121227|5509_1 242 G-VIMEGPPGTGKTLLARAVAGEAGVPFISASGSEFVEM 279
                 4.4679*****************************9985 PP

  == domain 2    score: 3.7 bits;  conditional E-value: 0.011
   TIGR02639 264 erlkevveeiekeedailfiDeihtiv 290
                 +r++++ +e +k+   i+fiDei ++ 
  MMETSP1137-20121227|5509_1 286 ARIRSLFSEAKKNAPCIVFIDEIDAVG 312
                 79*********************9864 PP

>> TIGR00763  lon: ATP-dependent protease La
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   0.1   1.3e-05    0.0035     351     438 ..     235     317 ..     215     323 .. 0.76

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 1.3e-05
   TIGR00763 351 lkgki...lclvGPPGVGKtSlaksiAkalnrkfvrlslGGlkDvaeikGHRrtYvGalPGkiiqglkkvktenP.lillDEiDKlgssvrG 438
                 l +ki   +++ GPPG GKt la+++A   +  f+  s  G + v         +vG    +i   + ++k++ P ++++DEiD +g++ +G
  MMETSP1137-20121227|5509_1 235 LGAKIprgVIMEGPPGTGKTLLARAVAGEAGVPFISAS--GSEFVE-------MFVGVGAARIRSLFSEAKKNAPcIVFIDEIDAVGRQRAG 317
                 555544446789**********************7655..655443.......577777789999999999999944579****99988776 PP

>> TIGR02902  spore_lonB: ATP-dependent protease LonB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.6   0.0   6.1e-05     0.017      80     130 ..     234     286 ..     226     305 .. 0.75
   2 ?    0.2   0.0      0.17        46     297     339 ..     416     458 ..     402     505 .. 0.80

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 6.1e-05
   TIGR02902  80 alcGpnpqhviiyGppGvGktaaarlvleeakksaaspfkee..akfveidat 130
                 al    p+ vi+ GppG Gkt  ar v  ea     s    e    fv + a+
  MMETSP1137-20121227|5509_1 234 ALGAKIPRGVIMEGPPGTGKTLLARAVAGEAGVPFISASGSEfvEMFVGVGAA 286
                 66667799*******************99997655554333311345555555 PP

  == domain 2    score: 0.2 bits;  conditional E-value: 0.17
   TIGR02902 297 nGreavnlvqlaaGlalnenrkkilaediewviesgqyspkse 339
                 +G    nl++ aa +a+ +n+ +i   ++++ i+ + + ++++
  MMETSP1137-20121227|5509_1 416 SGASLSNLLNEAAIVAARTNKTEISYTEVDYAIDRATVGLQKT 458
                 6778889*************************99887665554 PP

>> TIGR02173  cyt_kin_arch: putative cytidylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   0.1   3.7e-05      0.01       3      31 ..     243     271 ..     242     279 .. 0.92
   2 ?   -1.4   0.0       1.6   4.5e+02      53      71 ..     596     614 ..     593     623 .. 0.82

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 3.7e-05
   TIGR02173   3 ivisGpPGsGkttvakilaeklslklisa 31 
                 +++ GpPG+Gkt +a+ +a + ++ +isa
  MMETSP1137-20121227|5509_1 243 VIMEGPPGTGKTLLARAVAGEAGVPFISA 271
                 6889***********************98 PP

  == domain 2    score: -1.4 bits;  conditional E-value: 1.6
   TIGR02173  53 eekeiDkkiDrkikeiaek 71 
                  ++e +k+iD ++kei+  
  MMETSP1137-20121227|5509_1 596 ASPETEKMIDAEVKEIVAD 614
                 678999*********9865 PP

>> TIGR02881  spore_V_K: stage V sporulation protein K
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   0.0   2.6e-05    0.0072      45     119 ..     243     313 ..     210     382 .. 0.81

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 2.6e-05
   TIGR02881  45 mifkGnPGtGkttvarllaklfkelnvlskGhlieveradlvGeyiGhtaqktrevi...kkalGGvlfideayslar 119
                 +i++G PGtGkt +ar +a    e +v     +i +  +++v  ++G  a ++r +    kk    ++fide  ++ r
  MMETSP1137-20121227|5509_1 243 VIMEGPPGTGKTLLARAVAG---EAGV----PFISASGSEFVEMFVGVGAARIRSLFseaKKNAPCIVFIDEIDAVGR 313
                 7999************9985...7776....5899999****************976333677789******988876 PP

>> TIGR02640  gas_vesic_GvpN: gas vesicle protein GvpN
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.7   0.0   5.1e-05     0.014      22      56 ..     241     275 ..     228     290 .. 0.87

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 5.1e-05
   TIGR02640  22 ypvhlrGPaGtGktslalhvakkrdrPvvllnGda 56 
                 + v + GP GtGkt la++va + + P +   G +
  MMETSP1137-20121227|5509_1 241 RGVIMEGPPGTGKTLLARAVAGEAGVPFISASGSE 275
                 568899*********************99888865 PP

>> TIGR02928  TIGR02928: orc1/cdc6 family replication initiation protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.1   0.0   0.00021     0.056      34      61 ..     234     261 ..     218     267 .. 0.84
   2 ?   -3.4   0.0       2.6   7.2e+02     127     141 ..     297     311 ..     289     315 .. 0.73
   3 ?   -0.6   0.0      0.37     1e+02     246     289 ..     422     465 ..     420     492 .. 0.81

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 0.00021
   TIGR02928  34 ilrgsrpsnvliyGktGtGKtavtkkvl 61 
                 +l  + p+ v++ G++GtGKt+ +++v 
  MMETSP1137-20121227|5509_1 234 ALGAKIPRGVIMEGPPGTGKTLLARAVA 261
                 5667889*****************9987 PP

  == domain 2    score: -3.4 bits;  conditional E-value: 2.6
   TIGR02928 127 redsliivLDEiDkl 141
                 ++   i+ +DEiD +
  MMETSP1137-20121227|5509_1 297 KNAPCIVFIDEIDAV 311
                 455678899****87 PP

  == domain 3    score: -0.6 bits;  conditional E-value: 0.37
   TIGR02928 246 dlLreageiAeeegsekvteehvekAqekiekerllelirglpt 289
                 +lL ea+ +A + +++++   +v+ A +++ +   + +    p 
  MMETSP1137-20121227|5509_1 422 NLLNEAAIVAARTNKTEISYTEVDYAIDRATVGLQKTTGTSFPN 465
                 5999********************99998877665555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (675 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       243  (0.0592394); expected 82.0 (0.02)
Passed bias filter:                      215  (0.0524135); expected 82.0 (0.02)
Passed Vit filter:                        47  (0.0114578); expected 4.1 (0.001)
Passed Fwd filter:                        15  (0.00365675); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.75u 0.23s 00:00:00.98 Elapsed: 00:00:00.64
# Mc/sec: 1392.07
//
Query:       MMETSP1137-20121227|5510_1  [L=1833]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1833 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       151  (0.0368113); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 1.04u 0.15s 00:00:01.19 Elapsed: 00:00:00.85
# Mc/sec: 2846.31
//
Query:       MMETSP1137-20121227|5511_1  [L=471]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (471 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        73  (0.0177962); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.13s 00:00:00.45 Elapsed: 00:00:00.45
# Mc/sec: 1381.49
//
Query:       MMETSP1137-20121227|5512_1  [L=347]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.036   12.0   0.8      0.072   11.0   0.6    1.5  1  TIGR00151 ispF: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
        9.4    2.9  13.4        1.3    5.7   5.6    1.9  2  TIGR01843 type_I_hlyD: type I secretion membrane fusion protein, HlyD family


Domain annotation for each model (and alignments):
>> TIGR00151  ispF: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.6   3.5e-05     0.072      67     132 ..     255     318 ..     247     330 .. 0.84

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 3.5e-05
   TIGR00151  67 wkgadsaklLkkvvellkekgykisnvdvtiiaerPKlapkieamrekiaelLeieldevnvkatt 132
                  ++a++++ L  + e l++k  ++ n+++  i++rPK a +i+a+++k+a l ++e+++v +    
  MMETSP1137-20121227|5512_1 255 AGKAKAVTQLTAAREELQKKMADVRNLKC--ITHRPKHAAEIQAVKKKLAALEKLEKSKVVLPLEE 318
                 556777888999999**********9987..789*****************999999988766555 PP

>> TIGR01843  type_I_hlyD: type I secretion membrane fusion protein, HlyD family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   5.6   0.00065       1.3     130     258 ..     145     275 ..     118     287 .. 0.76
   2 ?    0.1   0.7     0.033        67     154     213 ..     273     334 ..     269     341 .. 0.65

  Alignments for each domain:
  == domain 1    score: 5.7 bits;  conditional E-value: 0.00065
   TIGR01843 130 qeslfesrksalraqlesleaqikqleaeleglqaqlqalrqqleliseelealrkLkekglvsrlelLel..ereraelqgelaeleaeleklkaeldeleeklqeleqkfreevseelreaqarlaele 258
                 + + f+++ +a   +  + ++ ++ l+a+ +++++  +al+    l ++e    +   ++gl  +  +L++  e+ +++ q   +e e  l+ ++++++el +kl  +e+  ++++ ++l+ a+++l++  
  MMETSP1137-20121227|5512_1 145 EMDTFKAMIAAKTPTFSQRKRALDALKASKARIASLEEALTAMKPLSDDEQSWYDAVDAEGLGLKISWLAQtlEKMVDDGQLTAKEREEVLSRMEEKAEELSLKLSAAEAAGKAKAVTQLTAAREELQKKM 275
                 4455555555555555555555556666666666655666666677889999999999***********863367788888888999999***********************************998755 PP

  == domain 2    score: 0.1 bits;  conditional E-value: 0.033
   TIGR01843 154 qleaeleglqaqlqalr..qqleliseelealrkLkekglvsrlelLelereraelqgelae 213
                 +++a +++l+  +++ +   ++++++++l al+kL+++++v  le  ++  +  +l ++l  
  MMETSP1137-20121227|5512_1 273 KKMADVRNLKCITHRPKhaAEIQAVKKKLAALEKLEKSKVVLPLEEVQKLSAKPKLLADLHA 334
                 55555555555544444004677889999999999999999877776666666666666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (347 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       273  (0.0665529); expected 82.0 (0.02)
Passed bias filter:                      129  (0.0314481); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.32u 0.17s 00:00:00.49 Elapsed: 00:00:00.41
# Mc/sec: 1117.08
//
Query:       MMETSP1137-20121227|5513_1  [L=422]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (422 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       144  (0.0351048); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.14s 00:00:00.44 Elapsed: 00:00:00.37
# Mc/sec: 1505.39
//
Query:       MMETSP1137-20121227|5515_1  [L=354]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (354 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       287  (0.0699659); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.15s 00:00:00.47 Elapsed: 00:00:00.31
# Mc/sec: 1507.23
//
Query:       MMETSP1137-20121227|5516_1  [L=103]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (103 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        66  (0.0160897); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.14s 00:00:00.28 Elapsed: 00:00:00.28
# Mc/sec: 485.53
//
Query:       MMETSP1137-20121227|5517_1  [L=288]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.6e-08   30.2   0.0    1.1e-07   29.8   0.0    1.2  1  TIGR02451 anti_sig_ChrR: anti-sigma factor, putative, ChrR family


Domain annotation for each model (and alignments):
>> TIGR02451  anti_sig_ChrR: anti-sigma factor, putative, ChrR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.8   0.0   2.6e-11   1.1e-07     111     190 ..      70     150 ..      24     160 .. 0.83

  Alignments for each domain:
  == domain 1    score: 29.8 bits;  conditional E-value: 2.6e-11
   TIGR02451 111 slggkvssvtldi.edkearv.rLlkieagqeipeHtHkGlElTlvlkGafsdetgeyeeGDleeaDeeveHsPktekdkdC 190
                 s+++ vs+ +ld+ ++++ar+ ++++ +   + peH H G E  +vl G f d+ ge+ +G    +    +H P +++d+ C
  MMETSP1137-20121227|5517_1  70 SPAAGVSRFMLDRiGEEKARAtTIVRYQPNSRFPEHEHIGGEEFMVLAGTFKDQFGEFPAGTYVRNPIGSKHAPWVDEDG-C 150
                 67889999999963566777625789999***********************************************9994.4 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (288 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        55  (0.0134081); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.22u 0.11s 00:00:00.33 Elapsed: 00:00:00.44
# Mc/sec: 863.93
//
Query:       MMETSP1137-20121227|5518_1  [L=90]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (90 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        64  (0.0156021); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.13s 00:00:00.27 Elapsed: 00:00:00.26
# Mc/sec: 456.89
//
Query:       MMETSP1137-20121227|5520_1  [L=388]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (388 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       145  (0.0353486); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.15s 00:00:00.43 Elapsed: 00:00:00.63
# Mc/sec: 812.89
//
Query:       MMETSP1137-20121227|5521_1  [L=314]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0008   15.4   0.0       0.23    7.2   0.0    2.7  3  TIGR00870 trp: transient-receptor-potential calcium channel protein


Domain annotation for each model (and alignments):
>> TIGR00870  trp: transient-receptor-potential calcium channel protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0     0.018        75     126     156 ..      86     116 ..      70     118 .. 0.83
   2 !    4.7   0.0   0.00033       1.4     133     158 ..     163     188 ..     154     210 .. 0.83
   3 !    7.2   0.0   5.6e-05      0.23     130     159 ..     226     255 ..     218     262 .. 0.90

  Alignments for each domain:
  == domain 1    score: -1.1 bits;  conditional E-value: 0.018
   TIGR00870 126 seftkgitalilAihkqnyeivklLlekgas 156
                 s++     a+  A ++ n  ivklLl + a+
  MMETSP1137-20121227|5521_1  86 SRMESPVAAINFACICGNEFIVKLLLSSNAN 116
                 5556667899999*************99885 PP

  == domain 2    score: 4.7 bits;  conditional E-value: 0.00033
   TIGR00870 133 talilAihkqnyeivklLlekgasve 158
                 t l+ A++++n+  + lLl+ +a v 
  MMETSP1137-20121227|5521_1 163 TLLHFAVQRDNLSALGLLLAHRAHVD 188
                 779*********************97 PP

  == domain 3    score: 7.2 bits;  conditional E-value: 5.6e-05
   TIGR00870 130 kgitalilAihkqnyeivklLlekgasvea 159
                  g t+l++A+      +vklLl+  as ++
  MMETSP1137-20121227|5521_1 226 TGATPLHVAAAGGHAGCVKLLLAAQASTQV 255
                 589**********************99885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (314 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        84  (0.0204778); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.25u 0.13s 00:00:00.38 Elapsed: 00:00:00.38
# Mc/sec: 1090.65
//
Query:       MMETSP1137-20121227|5522_1  [L=195]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (195 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       185  (0.0451); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.13s 00:00:00.32 Elapsed: 00:00:00.32
# Mc/sec: 804.31
//
Query:       MMETSP1137-20121227|5523_1  [L=133]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (133 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        33  (0.00804486); expected 82.0 (0.02)
Passed bias filter:                       29  (0.00706972); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.16s 00:00:00.32 Elapsed: 00:00:00.60
# Mc/sec: 292.58
//
Query:       MMETSP1137-20121227|5524_1  [L=85]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (85 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        87  (0.0212092); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.24
# Mc/sec: 467.46
//
Query:       MMETSP1137-20121227|5525_1  [L=619]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      2e-13   47.8   0.1      5e-13   46.5   0.1    1.5  1  TIGR03965 actino_glycTran: mycofactocin system glycosyltransferase
    3.9e-05   21.2   0.0    6.1e-05   20.6   0.0    1.2  1  TIGR04017 WcaA: colanic acid biosynthesis glycosyl transferase WcaA
     0.0026   14.6   0.0     0.0048   13.7   0.0    1.3  1  TIGR03937 PgaC_IcaA: poly-beta-1,6 N-acetyl-D-glucosamine synthase
  ------ inclusion threshold ------
      0.036   10.7   0.0      0.052   10.1   0.0    1.1  1  TIGR03111 glyc2_xrt_Gpos1: putative glycosyltransferase, TIGR03111 family


Domain annotation for each model (and alignments):
>> TIGR03965  actino_glycTran: mycofactocin system glycosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.5   0.1   4.9e-16     5e-13      71     274 ..     349     556 ..     341     560 .. 0.79

  Alignments for each domain:
  == domain 1    score: 46.5 bits;  conditional E-value: 4.9e-16
   TIGR03965  71 dsldsvtvVvPvrdrpaglarllaalealdyprdrlevivVDDgSedpvetaaar.aa......eltvr.viRhdrsqGpaaaRNaGlraartefvAFlDsDvvprpgWLeallaefsdpgVa.lvaprvvaldaedtrlaryEavrSsLdlGpeeaavrprgaVsYvpsaalivrRrallevgGFDeslevg.EDvDlvwRlveaGarvrYeP 274
                 d +  vtv v  ++r a l + l++++ ++ p + ++vivVDDgS+++ + a+ +  a      + + + ++R  r  G  a+RN+ +r a++ef+ FlD+D   +p  Le+ll      g + l +p    ++ae+  l  +  ++  L lG++ a+   +        a+ +vrR+a+  + GF e  +vg ED +l  R+v +G  ++  P
  MMETSP1137-20121227|5525_1 349 DAAVMVTVCVVHHERGALLLQALESVRRQTLPPEEIQVIVVDDGSTSAQALATLShVAawpefvSGKWQlLLRPARYLG--ASRNEAARHAQGEFLFFLDDDNCLKPHALETLLHAAHASGAQiLTSPNEKWPSAEPPPLS-HKSTERWLPLGAAAAVGVFKN---CFGDANALVRRNAFITLRGFTEDPNVGhEDWELWARAVLQGYTLQVIP 556
                 556779999999*********************************9987776655222111111233332456666666..67*****************************99766666554166777777778888885.7889999****9876544333...4679**********************989*********9999887655 PP

>> TIGR04017  WcaA: colanic acid biosynthesis glycosyl transferase WcaA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   0.0   5.9e-08   6.1e-05       6     111 ..     353     464 ..     349     476 .. 0.80

  Alignments for each domain:
  == domain 1    score: 20.6 bits;  conditional E-value: 5.9e-08
   TIGR04017   6 lisiymptwnrqqlairaiksvlrqdy..dnweliivddcsssyeqlqkfveelndprvkyihndl....nsgacavrnqailqakgeyitgiddddewtpnrlsvflahke 111
                 ++++ +   +r  l ++a++sv rq    ++ ++i+vdd s+s + l  + +  + p     + +l         a rn+a  +a+ge++  +ddd+   p  l  +l   +
  MMETSP1137-20121227|5525_1 353 MVTVCVVHHERGALLLQALESVRRQTLppEEIQVIVVDDGSTSAQALATLSHVAAWPEFVSGKWQLllrpARYLGASRNEAARHAQGEFLFFLDDDNCLKPHALETLLHAAH 464
                 677788889999*************973367789*************998887777776555544412112334699**************************998886554 PP

>> TIGR03937  PgaC_IcaA: poly-beta-1,6 N-acetyl-D-glucosamine synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   0.0   4.7e-06    0.0048      42     149 ..     349     462 ..     332     471 .. 0.77

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 4.7e-06
   TIGR03937  42 eevpkvsllvpcynegenveetisallklkyp..nleviainDGskDdta.eildklakkedrlr...vihleenqGkaaalneglkaakseylvciDgDalldekalkylvee 149
                 +   +v++ v  +  g+ + ++++++ +++ p  +++vi+++DGs+   a ++l+++a+  + +     + l+  +   a+ ne++++a+ e+l  +D D  l+++al+ l+++
  MMETSP1137-20121227|5525_1 349 DAAVMVTVCVVHHERGALLLQALESVRRQTLPpeEIQVIVVDDGSTSAQAlATLSHVAAWPEFVSgkwQLLLRPARYLGASRNEAARHAQGEFLFFLDDDNCLKPHALETLLHA 462
                 566789999999999999********999997446789*******97655266777766544322211334445666667889************************9998876 PP

>> TIGR03111  glyc2_xrt_Gpos1: putative glycosyltransferase, TIGR03111 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0   5.1e-05     0.052      51     153 ..     354     460 ..     344     470 .. 0.73

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 5.1e-05
   TIGR03111  51 itiiiPvynsedtlknciesiknssypkklidvilvnnqssd.dsfkvfaraqkefpel.slry...lnsdqGkakalnaaiyksiGkyiinidsdGvlekdaiknmv 153
                 +t+ +  ++  + l + +es+  ++ p + i+vi+v++ s+  ++    +++   +pe+ s ++   l   +    + n a  +++G+++  +d d  l+ +a+  ++
  MMETSP1137-20121227|5525_1 354 VTVCVVHHERGALLLQALESVRRQTLPPEEIQVIVVDDGSTSaQALATLSHVAA-WPEFvSGKWqllLRPARYLGASRNEAARHAQGEFLFFLDDDNCLKPHALETLL 460
                 6666666677788999**********************9986145555555443.33321333322245555566667999999999999999999999999988765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (619 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        93  (0.0226719); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.45u 0.13s 00:00:00.58 Elapsed: 00:00:00.52
# Mc/sec: 1571.18
//
Query:       MMETSP1137-20121227|5526_1  [L=434]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (434 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       142  (0.0346173); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.17s 00:00:00.47 Elapsed: 00:00:00.56
# Mc/sec: 1022.92
//
Query:       MMETSP1137-20121227|5527_1  [L=775]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      7e-06   23.1   0.1     0.0077   13.1   0.1    2.2  2  TIGR03594 GTPase_EngA: ribosome-associated GTPase EngA
    1.2e-05   23.0   0.2      0.011   13.4   0.0    2.5  2  TIGR00231 small_GTP: small GTP-binding protein domain
  ------ inclusion threshold ------
      0.011   12.4   1.2        0.3    7.7   0.1    2.3  2  TIGR03918 GTP_HydF: [FeFe] hydrogenase H-cluster maturation GTPase HydF
      0.027   11.4   1.1       0.13    9.1   0.0    2.4  3  TIGR00450 mnmE_trmE_thdF: tRNA modification GTPase TrmE


Domain annotation for each model (and alignments):
>> TIGR03594  GTPase_EngA: ribosome-associated GTPase EngA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.8   0.0    0.0003      0.31     178     196 ..     135     153 ..      71     156 .. 0.87
   2 !   13.1   0.1   7.5e-06    0.0077     204     299 ..     219     317 ..     211     352 .. 0.75

  Alignments for each domain:
  == domain 1    score: 7.8 bits;  conditional E-value: 0.0003
   TIGR03594 178 iaiiGrpNvGKStLvNall 196
                 i +iG  N+GKS+L+ ++ 
  MMETSP1137-20121227|5527_1 135 IVVIGSQNAGKSSLLETIS 153
                 7788888888888887765 PP

  == domain 2    score: 13.1 bits;  conditional E-value: 7.5e-06
   TIGR03594 204 sdiaGtTrDsidievev.kgkkylliDTAGirrkkkveekveklsvlrtlkaierad.vvllvlDategise.qDlkiaglileegkalvivvNKwDlv 299
                  ++  +T+D+++i+v + kg ++++ D  Gi   ++ ++++e+  v  t +  ++ + ++l+ + a++++++ + lkia     +g  ++ +v K+D++
  MMETSP1137-20121227|5527_1 219 ANTGAVTKDPVYIKVVReKGITLTMCDLPGITAMSSSQHDIEEQTVEMTEEWAANPNmIILCCVQAQDDFHNsKALKIALKYDPQGMRTLGIVTKVDML 317
                 455668999999987651577889999999999999999999999999988777766144556788888865145788888888888888888888887 PP

>> TIGR00231  small_GTP: small GTP-binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.0     1e-05     0.011       3      26 ..     132     155 ..     130     165 .. 0.87
   2 !    7.0   0.0   0.00093      0.96      42      89 ..     230     279 ..     216     322 .. 0.74

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 1e-05
   TIGR00231   3 eikivivGhvdvGKstLlnsllkn 26 
                 +  iv++G+ ++GKs+Ll+ +++ 
  MMETSP1137-20121227|5527_1 132 CPGIVVIGSQNAGKSSLLETISGI 155
                 5679****************9875 PP

  == domain 2    score: 7.0 bits;  conditional E-value: 0.00093
   TIGR00231  42 vteqieedGktykvnllDTaG....qedfdairrlyvreverslevvdivil 89 
                   ++++e+G+t  +++ D++G          i+++ v+++e  +   +++il
  MMETSP1137-20121227|5527_1 230 YIKVVREKGIT--LTMCDLPGitamSSSQHDIEEQTVEMTEEWAANPNMIIL 279
                 34579****55..********7766555567888888888877766666655 PP

>> TIGR03918  GTP_HydF: [FeFe] hydrogenase H-cluster maturation GTPase HydF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   0.1   0.00029       0.3      10      29 ..     135     154 ..     129     157 .. 0.89
   2 ?    3.1   0.1    0.0075       7.7      32     135 ..     215     324 ..     210     373 .. 0.74

  Alignments for each domain:
  == domain 1    score: 7.7 bits;  conditional E-value: 0.00029
   TIGR03918  10 ialfGrrNaGKSsliNaltg 29 
                 i+++G +NaGKSsl+ ++ g
  MMETSP1137-20121227|5527_1 135 IVVIGSQNAGKSSLLETISG 154
                 899************99976 PP

  == domain 2    score: 3.1 bits;  conditional E-value: 0.0075
   TIGR03918  32 vaivsdvpGtTtDpvekamEllplGpvvliDTaGldD....egeLGelRvektrevlektdlallvvdaeaelee..leeelleelkekkipvivvlnkidlkeeekeke 135
                 +a+++++   T Dpv+ ++   +    +++D +G+      + ++ e+ ve t+e  ++ ++++l++ ++++  +  +  +++ + + + + ++ +++k+d+  ++ + +
  MMETSP1137-20121227|5527_1 215 MAMMANTGAVTKDPVYIKVVREKGITLTMCDLPGITAmsssQHDIEEQTVEMTEEWAANPNMIILCCVQAQDDFHnsKALKIALKYDPQGMRTLGIVTKVDMLPTKGDFA 324
                 577777778899999988765555578899*999976322256799999********999999998766655544004456677778899***********998876543 PP

>> TIGR00450  mnmE_trmE_thdF: tRNA modification GTPase TrmE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   0.0   0.00013      0.13     211     229 ..     134     152 ..     100     154 .. 0.78
   2 ?   -0.3   0.0     0.093        95     244     303 ..     225     289 ..     215     336 .. 0.69
   3 ?   -3.0   0.1       0.6   6.2e+02     138     198 ..     395     456 ..     389     466 .. 0.72

  Alignments for each domain:
  == domain 1    score: 9.1 bits;  conditional E-value: 0.00013
   TIGR00450 211 klaivGktNvGKSSLlNal 229
                  ++++G+ N+GKSSLl  +
  MMETSP1137-20121227|5527_1 134 GIVVIGSQNAGKSSLLETI 152
                 589*************875 PP

  == domain 2    score: -0.3 bits;  conditional E-value: 0.093
   TIGR00450 244 tRDvvE.edleleGilvkllDtAGiR...eaadkvEklGiekslkaikeadlvlyv.lDaskplt 303
                 t+D v  +++  +Gi++ + D  Gi     ++  +E   +e + + + + +++++  + a+ +  
  MMETSP1137-20121227|5527_1 225 TKDPVYiKVVREKGITLTMCDLPGITamsSSQHDIEEQTVEMTEEWAANPNMIILCcVQAQDDFH 289
                 66665513445689999999*9999722256788************9999998865155555443 PP

  == domain 3    score: -3.0 bits;  conditional E-value: 0.6
   TIGR00450 138 kLk.GelkvkieelrkkllkllaevevniDyeedddeldqleevslnqklkkiiaelkdlln 198
                 +L+ G+l++ + +l+ ++ k +a  e +i     + +  q +   l + +++   ++++l+ 
  MMETSP1137-20121227|5527_1 395 QLQmGQLDQAMPQLATDVKKQIAVAESTIARLPATAKTPQEQRFLLLDVVQNCSLRFQELIT 456
                 55448888888888888888888888887766666666666777777777777777777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (775 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       197  (0.0480254); expected 82.0 (0.02)
Passed bias filter:                      144  (0.0351048); expected 82.0 (0.02)
Passed Vit filter:                        30  (0.00731351); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.58u 0.16s 00:00:00.74 Elapsed: 00:00:00.54
# Mc/sec: 1894.29
//
Query:       MMETSP1137-20121227|5528_1  [L=253]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (253 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        43  (0.0104827); expected 82.0 (0.02)
Passed bias filter:                       39  (0.00950756); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.14s 00:00:00.33 Elapsed: 00:00:00.33
# Mc/sec: 1011.92
//
Query:       MMETSP1137-20121227|5529_1  [L=357]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (357 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        79  (0.0192589); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.16s 00:00:00.43 Elapsed: 00:00:00.40
# Mc/sec: 1178.00
//
Query:       MMETSP1137-20121227|5530_1  [L=786]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0044   15.2   1.5     0.0044   15.2   1.0    1.9  2  TIGR02449 TIGR02449: TIGR02449 family protein
  ------ inclusion threshold ------
        1.7    5.4  10.2       0.61    6.8   2.1    2.1  2  TIGR01843 type_I_hlyD: type I secretion membrane fusion protein, HlyD family


Domain annotation for each model (and alignments):
>> TIGR02449  TIGR02449: TIGR02449 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   1.0   2.1e-06    0.0044       9      49 ..     401     441 ..     396     446 .. 0.92
   2 ?   -2.4   0.4      0.65   1.3e+03       3       3 ..     724     724 ..     673     743 .. 0.65

  Alignments for each domain:
  == domain 1    score: 15.2 bits;  conditional E-value: 2.1e-06
   TIGR02449   9 veaLleklerLkeeNrlLraqektlveERaqLleKNeqArq 49 
                 v +L + + +L+ eN  L+ q ++ +  RaqL   Neq r+
  MMETSP1137-20121227|5530_1 401 VSQLAHMCAQLQLENSELQSQFRQSRMGRAQLARLNEQLRS 441
                 6789999*******************************998 PP

  == domain 2    score: -2.4 bits;  conditional E-value: 0.65
   TIGR02449   3 q 3  
                 +
  MMETSP1137-20121227|5530_1 724 E 724
                 2 PP

>> TIGR01843  type_I_hlyD: type I secretion membrane fusion protein, HlyD family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.5    0.0045       9.3     210     265 ..     389     443 ..     370     463 .. 0.56
   2 ?    6.8   2.1    0.0003      0.61     144     239 ..     651     744 ..     612     751 .. 0.83

  Alignments for each domain:
  == domain 1    score: 2.9 bits;  conditional E-value: 0.0045
   TIGR01843 210 elaeleaeleklkaeldeleeklqeleqkfreevseelreaqarlaeleeelskar 265
                 + +++ ++++ l ++l+++ ++lq  +++++++ ++++   +a+la+l+e+l++  
  MMETSP1137-20121227|5530_1 389 ATKSASSDVNDLVSQLAHMCAQLQLENSELQSQFRQSR-MGRAQLARLNEQLRSSL 443
                 34455555555555555555555555555555555543.34555666665555443 PP

  == domain 2    score: 6.8 bits;  conditional E-value: 0.0003
   TIGR01843 144 qlesleaqikqleaeleglqaqlqalrqqleliseelealrkLkekglvsrlelLelere.raelqgelaeleaeleklkaeldeleeklqeleqkf 239
                 q    ++ +++    + g + ql++l++q + +s +l+ l kL  ++l    ++L++ere ra+lq++l ++  e+e+l+++ ++l ++lq l++++
  MMETSP1137-20121227|5530_1 651 QPSDKDRDVASTHHLRGGGDVQLTNLTKQHDDASMNLTKLTKLLPRELL---AMLQSEREvRASLQAQLVQNSIEIESLRRQHADLVAQLQALQNDA 744
                 33445666777778888999999**********************9996...5788888835689**************************999976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (786 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       142  (0.0346173); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.17s 00:00:00.68 Elapsed: 00:00:00.55
# Mc/sec: 1886.24
//
Query:       MMETSP1137-20121227|5531_1  [L=504]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (504 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       199  (0.0485129); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.15s 00:00:00.51 Elapsed: 00:00:00.41
# Mc/sec: 1622.50
//
Query:       MMETSP1137-20121227|5532_1  [L=289]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.6e-38  130.6   3.9    1.9e-38  130.4   2.7    1.0  1  TIGR01830 3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase
    2.5e-34  116.6   8.5    4.4e-33  112.6   5.9    2.0  1  TIGR02415 23BDH: acetoin reductases
    2.1e-31  107.2   6.8    1.7e-30  104.1   4.7    2.1  1  TIGR03971 SDR_subfam_1: oxidoreductase, SDR family
      3e-30  103.5   3.1    3.5e-30  103.3   2.2    1.0  1  TIGR01829 AcAcCoA_reduct: acetoacetyl-CoA reductase
    1.3e-28   98.0   2.3    1.6e-28   97.7   1.6    1.0  1  TIGR01832 kduD: 2-deoxy-D-gluconate 3-dehydrogenase
    1.2e-25   88.1  10.3    1.3e-23   81.4   7.1    2.0  1  TIGR01963 PHB_DH: 3-hydroxybutyrate dehydrogenase
    2.2e-25   87.3   5.5    2.7e-25   86.9   3.8    1.1  1  TIGR01831 fabG_rel: putative 3-oxoacyl-(acyl-carrier-protein) reductase
    7.3e-25   85.5   1.4    9.6e-25   85.1   1.0    1.1  1  TIGR03325 BphB_TodD: cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase
    3.7e-21   73.5   6.8    4.5e-21   73.2   4.7    1.1  1  TIGR03206 benzo_BadH: 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase
    2.9e-20   70.0   8.4    2.1e-19   67.2   5.8    1.9  1  TIGR02632 RhaD_aldol-ADH: rhamnulose-1-phosphate aldolase/alcohol dehydrogenase
    2.1e-19   67.7   0.6    3.6e-19   67.0   0.4    1.3  1  TIGR01500 sepiapter_red: sepiapterin reductase
    1.1e-14   52.0   4.3    1.8e-11   41.5   0.2    2.2  2  TIGR02685 pter_reduc_Leis: pteridine reductase
    0.00055   17.4   0.2    0.00055   17.4   0.1    1.5  2  TIGR01289 LPOR: light-dependent protochlorophyllide reductase


Domain annotation for each model (and alignments):
>> TIGR01830  3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  130.4   2.7   5.9e-41   1.9e-38       1     237 [.      51     284 ..      51     286 .. 0.93

  Alignments for each domain:
  == domain 1    score: 130.4 bits;  conditional E-value: 5.9e-41
   TIGR01830   1 alvtGasrgiGkaiakklakegakvviterskeekaeelaeelkeagvkaaavkldvsdeeevkelveeveeelg.eidilvnnAGitrDklllrmkeedwdevikvnLkgvfnvtkavlkkmikkrsGriinissvvgllGn...agqanYaasKaGligltkslakElasrnitvnavaPGfietdmteklsekvkkkileqiplkrlgkpeevaaavafLasdeasyitGqvlkvdGG 237
                 +++tGasrgiGka+a+++akega vv+  r + e ++++++e+++ g+ka +v++dvs+e++ k++vee+++++g ei      AG +  + +   +e++ de+i  n+k+v    k  + +m    +G+i+  ss +g +     ag   YaasKa +  l k  a E a  +++vn ++PG  +tdmt+ ++ +  +k ++ ip  r g+p+e+ ++v++Lasde+ y+tG+ + +d G
  MMETSP1137-20121227|5532_1  51 VVITGASRGIGKATALRFAKEGALVVLAAR-SVEPLAATKSEVESLGAKAXTVVTDVSSEADNKRMVEEAKAAFGgEIHAAFLCAGKADMGAITDTTEDQIDEIIGANVKSVMFGLKYLVPAMK---AGSIVICSSSMGSTARascAGMGLYAASKAMVDMLIKYAAVEAAP-AVRVNGISPGIFSTDMTAGFNPEEMTKSTNLIP--RPGNPDEIGSLVTYLASDESGYVTGSNMVIDAG 284
                 68*************************965.668899***********************************99769**********999******************************9995...6**********9987611257778*************99999775.7*********************99999999998..99****************************998 PP

>> TIGR02415  23BDH: acetoin reductases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  112.6   5.9   1.4e-35   4.4e-33       1     251 [.      49     285 ..      49     288 .. 0.88

  Alignments for each domain:
  == domain 1    score: 112.6 bits;  conditional E-value: 1.4e-35
   TIGR02415   1 kvalvtGaaqGiGkaiaerLakdGfavavadlneetaketakelkekgtkavavkldvsdkseveeaveqaveklG.eldvlvnnaGvalvtpileiteeeleklynvnvkgvlfGiqaaaekfkklkhkGkiinaasiag..vegspelsaysstkfavrgltqtaakeLakkgitvnayaPGivktemreeideklaelagkeigekleefsseiklGresePedvaelvsflasedsdyitGqsilvdGGl 251
                 kv ++tGa++GiGka a r+ak+G  v++a    e +++t++e+++ g ka  v++dvs+ ++ +++ve+a++ +G e++     aG a + +i++ te++++++   nvk+v+fG++  + ++k    +  +i ++s+ +    + + +++y+++k  v  l + aa e a+  + vn+ +PGi  t+m++  + ++            ++ ++   + r  +P+++ +lv++las++s y+tG  +++d G 
  MMETSP1137-20121227|5532_1  49 KVVVITGASRGIGKATALRFAKEGALVVLAARSVEPLAATKSEVESLGAKAXTVVTDVSSEADNKRMVEEAKAAFGgEIHAAFLCAGKADMGAITDTTEDQIDEIIGANVKSVMFGLKYLVPAMK---AGSIVICSSSMGStaRASCAGMGLYAASKAMVDMLIKYAAVEAAP-AVRVNGISPGIFSTDMTAGFNPEEM-----------TKSTNL--IPRPGNPDEIGSLVTYLASDESGYVTGSNMVIDAGW 285
                 799************************************************************************6379**************************************98776654...3444555666543115678899********************887.578*************998765432...........223333..458******************************996 PP

>> TIGR03971  SDR_subfam_1: oxidoreductase, SDR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  104.1   4.7   5.5e-33   1.7e-30       2     264 ..      47     285 ..      46     286 .. 0.87

  Alignments for each domain:
  == domain 1    score: 104.1 bits;  conditional E-value: 5.5e-33
   TIGR03971   2 eGkvalitGaarGqGraeavrlaaeGadiiaidlceplsdvvtypaatredldetaklvealGrkvlarkadvrkleelravveegveefG.rldvvvanaGvlsygrafelseeqWdtvldvnlkGvWktvkavvPalierknGGsiiivssvaglka...lpglahyaaakhGlvgltktlanelaeygirvnsihPtsvdtamiepeamrelfakreeaaraflpalpvsglvepedvadvvawlasdesryitGaqlavdaGa 264
                 e kv +itGa+rG G+a a+r+a+eGa ++              +a + e l+ t + ve+lG k+ + ++dv + ++ + +vee+ + fG  +      aG +++g++ + +e+q d+++  n+k v   +k  vPa+    + Gsi+i ss+ g  a     g + yaa+k  +  l+k  a e+a+  +rvn i+P   +t m++ +     f + ee+ ++  +  p +   +p+++ ++v++lasdes y+tG+++ +daG+
  MMETSP1137-20121227|5532_1  47 EDKVVVITGASRGIGKATALRFAKEGALVVL-------------AARSVEPLAATKSEVESLGAKAXTVVTDVSSEADNKRMVEEAKAAFGgEIHAAFLCAGKADMGAITDTTEDQIDEIIGANVKSVMFGLKYLVPAM----KAGSIVICSSSMGSTArasCAGMGLYAASKAMVDMLIKYAAVEAAP-AVRVNGISPGIFSTDMTA-G-----F-NPEEMTKST-NLIPRP--GNPDEIGSLVTYLASDESGYVTGSNMVIDAGW 285
                 679***********************97653.............3345578999999*******************************9964899999****************************************9....4799*****9998776212467789******************999.69**************99.2.....2.222333322.333433..46*****************************9 PP

>> TIGR01829  AcAcCoA_reduct: acetoacetyl-CoA reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  103.3   2.2   1.1e-32   3.5e-30       1     239 [.      49     284 ..      49     287 .. 0.89

  Alignments for each domain:
  == domain 1    score: 103.3 bits;  conditional E-value: 1.1e-32
   TIGR01829   1 rvalvtGglgGiGtaickrlakdGykvvanvapneerakewlqekevegfdvavvkadvssfeeakaavakveael.GpvdvlvnnaGitrdavfkkmtkeqWeevidtnlnsvfnvtrpviegmlergfGriinissvnGlkGq...fGqanysaakaGliGftkalaqegakkgvtvnviaPGyiatemvkavredvlkkivaqiPvkrlgkpeeiaaavaflaseeagyvtGatlsvnGG 239
                 +v ++tG+++GiG+a + r+ak+G  vv + ++  e  ++ + e e  g +   v +dvss  + k++v++ +a+  G++     +aG +    +   t++q +e+i +n++sv+   + ++ +m+    G i+  ss  G   +   +G   y+a+ka +  + k  a+ +a+ +v vn i+PG  +t+m++  + + ++k ++ iP  r g+p+ei+++v++las+e+gyvtG+++ ++ G
  MMETSP1137-20121227|5532_1  49 KVVVITGASRGIGKATALRFAKEGALVVLAARSV-EPLAATKSEVESLGAKAXTVVTDVSSEADNKRMVEEAKAAFgGEIHAAFLCAGKADMGAITDTTEDQIDEIIGANVKSVMFGLKYLVPAMK---AGSIVICSSSMGSTARascAGMGLYAASKAMVDMLIKY-AAVEAAPAVRVNGISPGIFSTDMTAGFNPEEMTKSTNLIP--RPGNPDEIGSLVTYLASDESGYVTGSNMVIDAG 284
                 7899**********************99988854.555566777788889999999*****************997369***********************************9999******96...699999999988776522268889*****977666665.55567789********************999999999999..89***************************9988 PP

>> TIGR01832  kduD: 2-deoxy-D-gluconate 3-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.7   1.6   5.2e-31   1.6e-28       4     245 ..      47     285 ..      45     288 .. 0.88

  Alignments for each domain:
  == domain 1    score: 97.7 bits;  conditional E-value: 5.2e-31
   TIGR01832   4 eGkvalvtGantGlGqgiavglaeaGadivgvgis..elsetqekvealGrkflslkadladeeaakalvdeaveeag.kidilvnnaGiirredavefsekdwddvlnvnlkavfllsqavakkllkqGrkgkiiniasllsfq..GGirvpsytasksavaGltkllanewakkginvnaiaPGyletnntealradekrnaaileriPagrwGepedlagaavflassasdyvnGailavdGGw 245
                 e kv+++tGa++G+G++ a+ +a+ Ga +v +++s   l  t+++ve+lG+k+ ++  d+++e++ k++v+ea +++g +i      aG        + +e + d+++  n+k+v++  + +   ++k G  + +i  +s+ s        +  y+ask  v  l k  a e a+ +++vn i+PG ++t+ t+ +  +e  +   ++ iP  r G+p++++  + +las+ s yv+G  + +d Gw
  MMETSP1137-20121227|5532_1  47 EDKVVVITGASRGIGKATALRFAKEGALVVLAARSvePLAATKSEVESLGAKAXTVVTDVSSEADNKRMVEEAKAAFGgEIHAAFLCAGKADMGAITDTTEDQIDEIIGANVKSVMFGLKYLVP-AMKAG--SIVICSSSMGSTAraSCAGMGLYAASKAMVDMLIKYAAVE-AAPAVRVNGISPGIFSTDMTAGFNPEEMTKS--TNLIP--RPGNPDEIGSLVTYLASDESGYVTGSNMVIDAGW 285
                 789************************99988754115689********************************9999779***********************************998877765.56777..6677888888865113456778**************9999.5678******************998776544..56688..67******************************** PP

>> TIGR01963  PHB_DH: 3-hydroxybutyrate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.4   7.1     4e-26   1.3e-23       2     254 ..      49     287 ..      48     288 .. 0.91

  Alignments for each domain:
  == domain 1    score: 81.4 bits;  conditional E-value: 4e-26
   TIGR01963   2 kvalvtGaasGiglaiakelaaaGakvvvndleeeaaeaaakeleeaggevlalkadvtkeeeiadlieavaaefg.sldiLvnnAGiqhvapieefptekfekiiavnltsafhtiraalpimkkqgwGriiniasvhglvasafKsa...YvaaKHglvGltKvlAlEvAetgitanaicPgyvrtpLvekqiadqaktrgiseeqvvkevllkkqptkrfvtveevaelalflasdaaaqitGqalsldgGwta 254
                 kv+++tGa+ Gig+a a ++a++Ga vv+   + e ++a+++e+e+ g+++ ++++dv++e++ ++++e+++a+fg ++      AG   + +i +  +++ ++ii  n++s +   +  +p mk+   G i+  +s  g  a a  +    Y a+K  +  l K +A+E A   +++n i Pg   t +          t g + e++ k   l + p     +++e+++l+++lasd++  +tG+++++d Gw  
  MMETSP1137-20121227|5532_1  49 KVVVITGASRGIGKATALRFAKEGALVVLAARSVEPLAATKSEVESLGAKAXTVVTDVSSEADNKRMVEEAKAAFGgEIHAAFLCAGKADMGAITDTTEDQIDEIIGANVKSVMFGLKYLVPAMKA---GSIVICSSSMGSTARASCAGmglYAASKAMVDMLIKYAAVEAAP-AVRVNGISPGIFSTDM----------TAGFNPEEMTKSTNLIPRPG----NPDEIGSLVTYLASDESGYVTGSNMVIDAGWAL 287
                 99*************************************************************************7357888889***************************************96...899999999988776654433339999999999********886.6**********99987..........45777777778777877776....69*****************************75 PP

>> TIGR01831  fabG_rel: putative 3-oxoacyl-(acyl-carrier-protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.9   3.8   8.6e-28   2.7e-25       1     237 [.      51     284 ..      51     286 .. 0.86

  Alignments for each domain:
  == domain 1    score: 86.9 bits;  conditional E-value: 8.6e-28
   TIGR01831   1 vlvtgasrgigraialklaadgfeiavhyrsdradaeesvaairaqggnarllkfdvadrva.vrevleadiaehgayygvvlnagiardaafpalseedwdavietnldgfynvihplvmpmirarkggriitlasvsgv...mgnrgqvnysaakagligatkalavelakrkitvnciapglidtemvaev.ekdlkealklvpmkrvgkaeevaalaaflmsddaayvtrqvisvngg 237
                 v++tgasrgig+a al++a +g  + +  rs +  a ++ +++++ g++a  +  dv+      r v ea+ a  g  +   l+ag a   a+   +e++ d +i +n+ +    ++ lv     a k g i+  +s  g    +   g   y+a+ka +    k  ave a   + vn i+pg+  t+m a   +++++++ +l+p  r g+++e+ +l+++l sd+++yvt   + ++ g
  MMETSP1137-20121227|5532_1  51 VVITGASRGIGKATALRFAKEGALVVLAARSVEPLA-ATKSEVESLGAKAXTVVTDVSSEADnKRMVEEAKAAFGGEIHAAFLCAGKADMGAITDTTEDQIDEIIGANVKSVMFGLKYLV----PAMKAGSIVICSSSMGStarASCAGMGLYAASKAMVDMLIKYAAVEAA-PAVRVNGISPGIFSTDMTAGFnPEEMTKSTNLIP--RPGNPDEIGSLVTYLASDESGYVTGSNMVIDAG 284
                 789********************9999999887765.6889****************977651566667788888999*******************************99887777654....4557788888888777511134568889********99********76.579***************9752678999999998..89**********************987777766 PP

>> TIGR03325  BphB_TodD: cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.1   1.0     3e-27   9.6e-25       2     192 ..      45     235 ..      44     254 .. 0.86

  Alignments for each domain:
  == domain 1    score: 85.1 bits;  conditional E-value: 3e-27
   TIGR03325   2 klkdevvlvtggasglgralvdrfvaegarvavldksaagleeleaa...hgdkvvgvegdvrllddhkeavarcveafg.kldtlipnagiwdystalvdipddrideafdevfeinvkgyllavkaalpalvasrgsviftvsnagfy...pngggalytaakhavvglvkelayelapyvrvngvapgglstdlr 192
                 +++d+vv++tg + g+g+a   rf  ega v +  +s++ l + +++    g+k  +v+ dv + +d+k+ v++  +afg  +++    ag  d   a+ d  +d+i    de+   nvk+ +++ k  +pa+ a  gs+++  s  g     +  g  ly+a+k  v  l+k  a e ap vrvng++pg +std+ 
  MMETSP1137-20121227|5532_1  45 RFEDKVVVITGASRGIGKATALRFAKEGALVVLAARSVEPLAATKSEvesLGAKAXTVVTDVSSEADNKRMVEEAKAAFGgEIHAAFLCAGKADMG-AITDTTEDQI----DEIIGANVKSVMFGLKYLVPAMKA--GSIVICSSSMGSTaraSCAGMGLYAASKAMVDMLIKYAAVEAAPAVRVNGISPGIFSTDMT 235
                 6799************************************9988875222689**************************64799999999999865.6778777777....68999****************975..8999998888865111456778******999999*************************86 PP

>> TIGR03206  benzo_BadH: 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.2   4.7   1.4e-23   4.5e-21       2     247 ..      47     284 ..      46     287 .. 0.88

  Alignments for each domain:
  == domain 1    score: 73.2 bits;  conditional E-value: 1.4e-23
   TIGR03206   2 kdkvaivtgggggiggaicrrfaeegakvavldlnaeaaekvaaairekggkaeavavditdrasvdaavaaaeealg.pvdvlvnnagwdvlkpflktekaewerliainltgalymhhavlkgmverkagrivniasd...aarvgssgeavyaackgglvafsktlarelarhgitvnvvcpgptdtalledvkseaekpeklieaftraiplgrlgkpddlagailflasddaafitgqvlsvsgg 247
                 +dkv+++tg + gig a+ +rfa+ega v +   + e      +++ + g ka +v +d++++a  +  v  a+ a+g  +      ag   ++++++t + + + +i  n++  ++  + +++ m   kag iv  +s    +ar+  +g  +yaa k  +  + k  a e a   + vn + pg   t +    +  + +pe +++  t+ ip  r g+pd++   +++lasd+++++tg  + +  g
  MMETSP1137-20121227|5532_1  47 EDKVVVITGASRGIGKATALRFAKEGALVVLAARSVEPLAATKSEVESLGAKAXTVVTDVSSEADNKRMVEEAKAAFGgEIHAAFLCAGKADMGAITDTTEDQIDEIIGANVKSVMFGLKYLVPAM---KAGSIVICSSSmgsTARASCAGMGLYAASKAMVDMLIKYAAVEAA-PAVRVNGISPGIFSTDM----T-AGFNPEEMTK-STNLIP--RPGNPDEIGSLVTYLASDESGYVTGSNMVIDAG 284
                 69***************************999999999999999******************************9997258888999******************************999999999...7899998877522268999***********988788888777755.689********888754....3.4568887654.577777..99***********************99888776 PP

>> TIGR02632  RhaD_aldol-ADH: rhamnulose-1-phosphate aldolase/alcohol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.2   5.8   6.6e-22   2.1e-19     405     597 ..      39     228 ..      33     288 .. 0.82

  Alignments for each domain:
  == domain 1    score: 67.2 bits;  conditional E-value: 6.6e-22
   TIGR02632 405 rmPkekelarrvalvtGgasGiGrevarrlvdeGahvvladldaeaaeavaaelvdkfGadkavalkldvtdeeavkaafaevalayGG.vdivvnnaGiavskpleeteleeWdlnldilatGyflvareaarllrkqglggnlvfiasknavvakknal...aysaakaaeahlvrllaielaelgirvntvaPd 597
                  m + k +  +v+++tG++ GiG+++a+r+++eGa vvla    e ++a++ e+    Ga ka +++ dv +e   k +++e+  a+GG + +    aG a    + +t++++ d  +  +++   +  +  +  ++    +g++v+ +s  + +a+ +      y+a+ka+   l++  a+e a++ +rvn++ P 
  MMETSP1137-20121227|5532_1  39 GMVNTKRFEDKVVVITGASRGIGKATALRFAKEGALVVLAARSVEPLAATKSEVE-SLGA-KAXTVVTDVSSEADNKRMVEEAKAAFGGeIHAAFLCAGKADMGAITDTTEDQIDEIIGANVKSVMFGLKYLVPAMK----AGSIVICSSSMGSTARASCAgmgLYAASKAMVDMLIKYAAVEAAPA-VRVNGISPG 228
                 5778999**********************************************98.7887.6788999********************977888999***9999999999999999999999988776666666665....689999999887777654331126*********************9.*******94 PP

>> TIGR01500  sepiapter_red: sepiapterin reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.0   0.4   1.2e-21   3.6e-19       2     202 ..      50     236 ..      49     247 .. 0.83

  Alignments for each domain:
  == domain 1    score: 67.0 bits;  conditional E-value: 1.2e-21
   TIGR01500   2 lllvtGasrGfGrelaqelakrlkaegsvlvLlaRndeaLkeskaeieaevsalsvdlvsldleaakdvedllkaleesikkeeyerillinnaGtlgdvskrekelsDsknvqkyydsnvtslvvltsellkklkelqglektvvnlssL..caikpfkswalYCaskaaRdmffqvLaleekedvkvLnYapGvlDtdmqs 202
                 ++++tGasrG+G++ a ++ak    eg  +vL aR+ e L  +k e+e+   + +  +v  d+++++d + +++  ++  + e  + + l   aG   d++ +++  +  +++++   +nv s++     l+ ++k       +v+ +ss+  +a ++  ++ lY aska+ dm+ +  a+e  + v+v   +pG++ tdm+ 
  MMETSP1137-20121227|5532_1  50 VVVITGASRGIGKATALRFAK----EGALVVLAARSVEPLAATKSEVES--LGAKAXTVVTDVSSEADNKRMVEEAKAAFGGEI-HAAFLC--AGK-ADMGAITD--TTEDQIDEIIGANVKSVMFGLKYLVPAMK----AGSIVICSSSMgsTARASCAGMGLYAASKAMVDMLIKYAAVEAAPAVRVNGISPGIFSTDMTA 236
                 689******************....***********************9..555667788899999987777777766666543.444444..443.46666666..45589***************99*******....55677788887335778899*****************************************96 PP

>> TIGR02685  pter_reduc_Leis: pteridine reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.1   0.4   5.2e-05     0.016       3      51 ..      50     100 ..      49     141 .. 0.67
   2 !   41.5   0.2   5.8e-14   1.8e-11     161     264 ..     186     287 ..     129     289 .] 0.77

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 5.2e-05
   TIGR02685   3 aalvtGaakriGrsiavklhqeGyrvvlhyrrsaeaa..sslaaelnaera 51 
                 + ++tGa++ iG++ a ++ +eG  vvl  r  +  a  +s ++ l a+  
  MMETSP1137-20121227|5532_1  50 VVVITGASRGIGKATALRFAKEGALVVLAARSVEPLAatKSEVESLGAKAX 100
                 679*************************98887754400344455544432 PP

  == domain 2    score: 41.5 bits;  conditional E-value: 5.8e-14
   TIGR02685 161 amtdqpllgfslytmakealeGltrsaalelaslqirvngvapGlsllpdampee.vkeeyrrkvplgqreasaeqiadvviflvskkakyitGtiikvdGGlsl 264
                 + +   + g  ly+ +k  ++ l + aa+e a+  +rvng++pG+    ++m+   + ee  +   l  r    ++i   v +l s++++y+tG+ + +d G++l
  MMETSP1137-20121227|5532_1 186 STARASCAGMGLYAASKAMVDMLIKYAAVEAAP-AVRVNGISPGIFS--TDMTAGfNPEEMTKSTNLIPRPGNPDEIGSLVTYLASDESGYVTGSNMVIDAGWAL 287
                 23345799**********************998.59********855..5555541457888999*************************************988 PP

>> TIGR01289  LPOR: light-dependent protochlorophyllide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.1   1.7e-06   0.00055       4      77 ..      49     121 ..      46     153 .. 0.74
   2 ?   -2.9   0.0       2.6   8.3e+02      12      25 ..     192     206 ..     186     212 .. 0.76

  Alignments for each domain:
  == domain 1    score: 17.4 bits;  conditional E-value: 1.7e-06
   TIGR01289   4 ptviitgassglglaaakalvekgkwhvvmacrdlekaekaaksl.glpkdsytilkldlasldsvrkfveqfre 77 
                 + v+itgas g+g a+a  ++++g   vv+a r +e    +  ++  l +++ t++  d++s    +++ve+ ++
  MMETSP1137-20121227|5532_1  49 KVVVITGASRGIGKATALRFAKEG-ALVVLAARSVEPLAATKSEVeSLGAKAXTVV-TDVSSEADNKRMVEEAKA 121
                 579*********************.899*****99865544444414445555555.588887777778877665 PP

  == domain 2    score: -2.9 bits;  conditional E-value: 2.6
   TIGR01289  12 ssglglaaa.kalve 25 
                  +g+gl+aa ka+v+
  MMETSP1137-20121227|5532_1 192 CAGMGLYAAsKAMVD 206
                 579999986578876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (289 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       163  (0.0397367); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                        23  (0.00560702); expected 4.1 (0.001)
Passed Fwd filter:                        13  (0.00316919); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.40u 0.15s 00:00:00.55 Elapsed: 00:00:00.85
# Mc/sec: 448.76
//
Query:       MMETSP1137-20121227|5534_1  [L=71]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (71 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       102  (0.0248659); expected 82.0 (0.02)
Passed bias filter:                       97  (0.023647); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.18s 00:00:00.31 Elapsed: 00:00:00.43
# Mc/sec: 217.94
//
Query:       MMETSP1137-20121227|5535_1  [L=934]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (934 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        94  (0.0229157); expected 82.0 (0.02)
Passed bias filter:                       39  (0.00950756); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.53u 0.17s 00:00:00.70 Elapsed: 00:00:00.56
# Mc/sec: 2162.77
//
Query:       MMETSP1137-20121227|5536_1  [L=284]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (284 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       138  (0.0336421); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.17s 00:00:00.40 Elapsed: 00:00:00.28
# Mc/sec: 1338.75
//
Query:       MMETSP1137-20121227|5537_1  [L=541]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0053   12.3  14.6     0.0083   11.7  10.1    1.2  1  TIGR02168 SMC_prok_B: chromosome segregation protein SMC
  ------ inclusion threshold ------
      0.013   12.6   0.0      0.021   11.9   0.0    1.2  1  TIGR03242 arg_catab_astE: succinylglutamate desuccinylase
      0.031    9.8  12.8       0.05    9.1   8.8    1.2  1  TIGR02169 SMC_prok_A: chromosome segregation protein SMC


Domain annotation for each model (and alignments):
>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.7  10.1   6.1e-06    0.0083     675     867 ..      63     227 ..      20     254 .. 0.34

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 6.1e-06
   TIGR02168 675 lerkkeieeleeeieeleekiaelekelkelekeleeleeeleklrkeleelerklselkkelerlekeveqleerlaqlekeleeleeereeleeeleeaeeelkeaeeeieeleaeieqlkeelkalrealseleaeltelkeeaaekeerleslekeiaalekeleeleeqieeleeeiesleaeieele 867
                 le+ +e                            l+ ++++l+  ++++   +++l  ++ + +++e    +l+ r+aq   ++  +   ++ l++el+ ae + ke     e++++ ++   ++l + +++++ l ae ++ +e+++  e++++s++k++a++  +++++ ++ +e+e ++  + +e e++ 
  MMETSP1137-20121227|5537_1  63 LEQHAE----------------------------LQVAAQALAAEQARSAAFSERLLLARHDKSAAEDDNAKLRCRVAQMAGQVDGFIVCIALLQAELQAAERAVKERAVAYEDQQTVYTGVCSALIDADARYATLAAEKKSVQEALKASERTCSSMNKRVAEADLRARRALQAQRETETRLGIVMHEKERIA 227
                 111111............................111111111222222222223333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333222222222222222222111111 PP

>> TIGR03242  arg_catab_astE: succinylglutamate desuccinylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   1.5e-05     0.021      89     129 ..      28      69 ..      22      85 .. 0.79

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 1.5e-05
   TIGR03242  89 lrkgkRyle.edlnRlfgGryqeleeskeklRaeeLeqvvea 129
                 l kgkR  e + +    gGr+++l +++e++Ra+eLeq++e 
  MMETSP1137-20121227|5537_1  28 LVKGKRMSEhSAVSVQLGGRWASLLQAEERCRATELEQHAEL 69 
                 66777876514567779*********************9976 PP

>> TIGR02169  SMC_prok_A: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   8.8   3.6e-05      0.05     246     417 ..      61     237 ..      30     250 .. 0.73

  Alignments for each domain:
  == domain 1    score: 9.1 bits;  conditional E-value: 3.6e-05
   TIGR02169 246 elaeleeelekleeeieelekeleeiekkleelnkkieklgeeeqlavkekleelkaeiekleraiaekeeeledaeerlakaeaeidklkeeie.......elereieeekkereklkeelkelkeeleelraeleevdkeaaelreelkelkekleklkeelnelkreldrlleelk 417
                    e+++el+   + + + ++++++  ++l  l+++ ++ +e++ ++++ +++++ +++      ia  + el+ ae+ +++  + ++ ++   +       + + + ++ ++e+++++e+lk+++ + + + ++++e d +a+++ +++ e +++l  + +e++ + + l+++ ++l 
  MMETSP1137-20121227|5537_1  61 TELEQHAELQVAAQALAAEQARSAAFSERLL-LARHDKSAAEDDNAKLRCRVAQMAGQVDGFIVCIALLQAELQAAERAVKERAVAYEDQQTVYTgvcsaliDADARYATLAAEKKSVQEALKASERTCSSMNKRVAEADLRARRALQAQRETETRLGIVMHEKERIAGLLQKK-DKLA 237
                 3333444444444444444555555555543.4555667789999*************99999999999999999999999999888888876551111111556777889999*************************************************99999655555.3332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (541 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       187  (0.0455875); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.46u 0.16s 00:00:00.62 Elapsed: 00:00:00.45
# Mc/sec: 1586.80
//
Query:       MMETSP1137-20121227|5538_1  [L=219]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (219 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        48  (0.0117016); expected 82.0 (0.02)
Passed bias filter:                       41  (0.00999512); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.15s 00:00:00.36 Elapsed: 00:00:00.28
# Mc/sec: 996.75
//
Query:       MMETSP1137-20121227|5539_1  [L=314]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   9.4e-145  479.3  12.1   1.1e-144  479.1   8.4    1.0  1  TIGR00343 TIGR00343: pyridoxal 5'-phosphate synthase, synthase subunit Pdx1
    5.3e-06   23.7   3.0     0.0057   13.7   0.1    2.5  2  TIGR00737 nifR3_yhdG: putative TIM-barrel protein, nifR3 family
    1.9e-05   22.0   0.7      0.026   11.7   0.0    2.3  2  TIGR03572 WbuZ: glycosyl amidation-associated protein WbuZ
    3.4e-05   21.1   0.6      0.065   10.3   0.0    2.3  2  TIGR00735 hisF: imidazoleglycerol phosphate synthase, cyclase subunit
     0.0022   15.5   0.1     0.0022   15.5   0.1    2.6  3  TIGR03128 RuMP_HxlA: 3-hexulose-6-phosphate synthase
     0.0028   15.1   0.2      0.048   11.1   0.0    2.4  2  TIGR00007 TIGR00007: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase
     0.0033   14.5   0.0      0.008   13.3   0.0    1.7  1  TIGR00693 thiE: thiamine-phosphate pyrophosphorylase
     0.0072   14.0   0.1      0.025   12.2   0.0    1.9  2  TIGR00419 tim: triose-phosphate isomerase
     0.0074   13.0   0.5      0.048   10.4   0.0    2.2  2  TIGR00262 trpA: tryptophan synthase, alpha subunit
  ------ inclusion threshold ------
      0.013   13.0   0.1       0.28    8.7   0.0    2.5  2  TIGR01740 pyrF: orotidine 5'-phosphate decarboxylase


Domain annotation for each model (and alignments):
>> TIGR00343  TIGR00343: pyridoxal 5'-phosphate synthase, synthase subunit Pdx1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  479.1   8.4  2.6e-147  1.1e-144       1     278 [.      10     286 ..      10     295 .. 0.98

  Alignments for each domain:
  == domain 1    score: 479.1 bits;  conditional E-value: 2.6e-147
   TIGR00343   1 lkkglakmlkgGvimdvvnaeqakiaeeaGavavmalervpadiraaGgvarmsdpklikeildavsipvmakvriGhiveaqvlealevdyidesevltpadetfhiekkkfkvpfvcGardlGealrriaeGaamirtkGeaGtGdvveavkhlrlikeeikklqkkleeeelaaeakelevlvellkevkkeGklpvvnfaaGGvatpadaallmqlGadGvfvGsGifksenpeklakaiveatthydepevlaevskdlGeamkGieieeise 278
                 +k g+a+mlkgGvimdv+++eqa+iaeeaGa+avmalervpadir+ Ggvarmsdpk+ikei  av+ipvmak riGh+ve q+l++++ dyidesevlt ade  h +k+kfkvpfvcG+r+lGealrriaeGaamirtkGeaGtG+vveav+h r++++eikkl+++ +e+el + ake+++++ l+k++++ G+lpvvnfaaGGvatpadaal+mqlG dGvfvGsGifks +p+k+a+aivea+++y++p+vla+vs+dlGeam Gi+ e+++ 
  MMETSP1137-20121227|5539_1  10 VKAGMAQMLKGGVIMDVIDPEQARIAEEAGACAVMALERVPADIRKDGGVARMSDPKMIKEIKAAVTIPVMAKSRIGHFVECQILQEIGADYIDESEVLTMADEDNHTNKNKFKVPFVCGCRNLGEALRRIAEGAAMIRTKGEAGTGNVVEAVRHARTLMREIKKLKTM-DEDELFTYAKEIQAPYALVKQTAEVGRLPVVNFAAGGVATPADAALMMQLGMDGVFVGSGIFKSADPAKRARAIVEAVANYNDPKVLAKVSEDLGEAMVGINCEDMTV 286
                 799********************************************************************************************************************************************************************97.7788**************************************************************************************************998865 PP

>> TIGR00737  nifR3_yhdG: putative TIM-barrel protein, nifR3 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   0.1   1.4e-05    0.0057     151     217 ..      30     100 ..      21     102 .. 0.77
   2 !    9.7   0.1   0.00023     0.095     183     225 ..     196     239 ..     189     243 .. 0.78

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 1.4e-05
   TIGR00737 151 eaariaedaGaqavalHgRTraqlye..Geanw...diiarvkqavkiPVignGDitspedAkamLeetgad 217
                 e ariae+aGa av+   R  a + +  G a++    +i+++k+av+iPV++   i ++ + + +L+e gad
  MMETSP1137-20121227|5539_1  30 EQARIAEEAGACAVMALERVPADIRKdgGVARMsdpKMIKEIKAAVTIPVMAKSRIGHFVECQ-ILQEIGAD 100
                 789*************9**9998754335554422279**************98888777664.55555555 PP

  == domain 2    score: 9.7 bits;  conditional E-value: 0.00023
   TIGR00737 183 iiarvkqavk...iPV..ignGDitspedAkamLeetgadgvligRga 225
                     vkq+++   +PV  ++ G + +p+dA  m++ +  dgv++g g 
  MMETSP1137-20121227|5539_1 196 L---VKQTAEvgrLPVvnFAAGGVATPADAALMMQLG-MDGVFVGSGI 239
                 4...4555444459996679***********999976.******9885 PP

>> TIGR03572  WbuZ: glycosyl amidation-associated protein WbuZ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.9   0.1   0.00047      0.19     159     224 ..      32     102 ..      17     110 .. 0.68
   2 !   11.7   0.0   6.3e-05     0.026      56     111 ..     187     244 ..     145     296 .. 0.79

  Alignments for each domain:
  == domain 1    score: 8.9 bits;  conditional E-value: 0.00047
   TIGR03572 159 areleelgagEil.lnsiDrd.....GtrkGydlelvktvskavkiPvialGGagslddlvevvleagasav 224
                 ar +ee+ga+ ++ l+ +  d     G+++  d +++k++++av+iPv+a   +g++ +++  ++e ga+ +
  MMETSP1137-20121227|5539_1  32 ARIAEEAGACAVMaLERVPADirkdgGVARMSDPKMIKEIKAAVTIPVMAKSRIGHFVECQI-LQEIGADYI 102
                 5556666666544344443331111245566799*****************99999887654.667777655 PP

  == domain 2    score: 11.7 bits;  conditional E-value: 6.3e-05
   TIGR03572  56 keerekllelieklaeevfvPlt..vgGGiksledvkkllkaGadKvsintaalenpe 111
                 ++e++  + l++++ae   +P+   ++GG+ +  d+  +++ G+d v + + ++++ +
  MMETSP1137-20121227|5539_1 187 AKEIQAPYALVKQTAEVGRLPVVnfAAGGVATPADAALMMQLGMDGVFVGSGIFKSAD 244
                 4566778899***********964479***********************99998766 PP

>> TIGR00735  hisF: imidazoleglycerol phosphate synthase, cyclase subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.1   0.0   0.00038      0.16     177     211 ..      53      88 ..      15     104 .. 0.72
   2 !   10.3   0.0   0.00016     0.065      64     116 ..     195     249 ..     180     296 .. 0.81

  Alignments for each domain:
  == domain 1    score: 9.1 bits;  conditional E-value: 0.00038
   TIGR00735 177 mdkdG.tksGydlellkkvkeavkiPviasgGaGka 211
                 + kdG + +  d +++k++k av+iPv+a + +G+ 
  MMETSP1137-20121227|5539_1  53 IRKDGgVARMSDPKMIKEIKAAVTIPVMAKSRIGHF 88 
                 44554144557999***************9998854 PP

  == domain 2    score: 10.3 bits;  conditional E-value: 0.00016
   TIGR00735  64 evvervaekvfiPlt..vgGGiksiedvkkllraGadkvsintaavkapelikel 116
                  +v+++ae   +P++   +GG+ + +d++ +++ G d v +++   k+++  k++
  MMETSP1137-20121227|5539_1 195 ALVKQTAEVGRLPVVnfAAGGVATPADAALMMQLGMDGVFVGSGIFKSADPAKRA 249
                 6899****99999864479************************999988877665 PP

>> TIGR03128  RuMP_HxlA: 3-hexulose-6-phosphate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.3      0.19        77       6      87 ..      24     112 ..      20     121 .. 0.55
   2 ?   -1.9   0.0       1.1   4.6e+02      75     104 ..     142     171 ..     135     195 .. 0.61
   3 !   15.5   0.1   5.3e-06    0.0022     161     205 ..     209     255 ..     185     256 .. 0.75

  Alignments for each domain:
  == domain 1    score: 0.6 bits;  conditional E-value: 0.19
   TIGR03128   6 lDlldleealelaekv.edyvdilE.iGtplikeeGleav...kelkeafpekkvlaDlKimDageyEaeqafaaGadiv...tvlgvad 87 
                 +D++d e+a  +ae++ + +v  lE +   + k+ G++ +   k +ke     ++ + +K   +  +E +++ + Gad++    vl++ad
  MMETSP1137-20121227|5539_1  24 MDVIDPEQAR-IAEEAgACAVMALErVPADIRKDGGVARMsdpKMIKEIKAAVTIPVMAKSRIGHFVECQILQEIGADYIdesEVLTMAD 112
                 5556555553.3333335555555523333333334433322245555555556555566665666899999999999873334666666 PP

  == domain 2    score: -1.9 bits;  conditional E-value: 1.1
   TIGR03128  75 aGadivtvlgvaddatikeavkaAkkegke 104
                  Ga ++   g a++  + eav++A+   +e
  MMETSP1137-20121227|5539_1 142 EGAAMIRTKGEAGTGNVVEAVRHARTLMRE 171
                 555555555666666666666665544333 PP

  == domain 3    score: 15.5 bits;  conditional E-value: 5.3e-06
   TIGR03128 161 v.avAGGikl.dtikeviklgadvvivGsaitkAedpaeaakkikkl 205
                 v   AGG+ +   +  +++lg d v vGs+i k +dpa+ a+ i+++
  MMETSP1137-20121227|5539_1 209 VnFAAGGVATpADAALMMQLGMDGVFVGSGIFKSADPAKRARAIVEA 255
                 4446899976256778899*************************986 PP

>> TIGR00007  TIGR00007: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.0      0.11        45     163     213 ..      49     100 ..      29     102 .. 0.76
   2 !   11.1   0.0   0.00012     0.048     190     224 ..     208     242 ..     188     249 .. 0.82

  Alignments for each domain:
  == domain 1    score: 1.4 bits;  conditional E-value: 0.11
   TIGR00007 163 ilTdiekdGtlsG.vnveltkelvkeaeveviasGGvssiedvkalkklgvk 213
                 +  di kdG ++   + +++ke++++++++v+a   + +  + + l+++g++
  MMETSP1137-20121227|5539_1  49 VPADIRKDGGVARmSDPKMIKEIKAAVTIPVMAKSRIGHFVECQILQEIGAD 100
                 5578999987655157888999999999999998888888888888877766 PP

  == domain 2    score: 11.1 bits;  conditional E-value: 0.00012
   TIGR00007 190 veviasGGvssiedvkalkklgvkgvivGkAlyeg 224
                 v+ +a+GGv++ +d   + +lg++gv vG+ +++ 
  MMETSP1137-20121227|5539_1 208 VVNFAAGGVATPADAALMMQLGMDGVFVGSGIFKS 242
                 44589*************************99875 PP

>> TIGR00693  thiE: thiamine-phosphate pyrophosphorylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   0.0     2e-05     0.008     142     196 ..     195     251 ..     183     252 .. 0.73

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 2e-05
   TIGR00693 142 elleeiaakaleipvv..aIGGit.lenveevlkagvdgvavvsaimaaadvaaaake 196
                  l++++a+   ++pvv  a GG+  +  ++ +++ g+dgv v s i+++ad+a+ a++
  MMETSP1137-20121227|5539_1 195 ALVKQTAEVG-RLPVVnfAAGGVAtPADAALMMQLGMDGVFVGSGIFKSADPAKRARA 251
                 4566665444.577654499**9615778889999*****************998875 PP

>> TIGR00419  tim: triose-phosphate isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.2   0.0   6.1e-05     0.025     197     227 ..     212     242 ..     188     243 .. 0.84
   2 ?   -2.9   0.0       2.6   1.1e+03      24      51 ..     266     294 ..     261     304 .. 0.63

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 6.1e-05
   TIGR00419 197 yGasvtaaedaelaaqldvdGvLlasavlka 227
                   ++v++  da l++ql++dGv ++s++ k+
  MMETSP1137-20121227|5539_1 212 AAGGVATPADAALMMQLGMDGVFVGSGIFKS 242
                 45799***********************985 PP

  == domain 2    score: -2.9 bits;  conditional E-value: 2.6
   TIGR00419  24 eevaseagv.evavappfvdldvvkdeve 51 
                 ++v++  g   v++  + + ++ +k+e+ 
  MMETSP1137-20121227|5539_1 266 AKVSEDLGEaMVGINCEDMTVRYAKREAG 294
                 45555544314678888888888888775 PP

>> TIGR00262  trpA: tryptophan synthase, alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.1      0.16        67     188     236 ..      66     113 ..      58     124 .. 0.76
   2 !   10.4   0.0   0.00012     0.048     187     237 ..     194     246 ..     185     262 .. 0.81

  Alignments for each domain:
  == domain 1    score: 0.1 bits;  conditional E-value: 0.16
   TIGR00262 188 elikkvkalskkPvlvGFGiskkeqvkelkelgadgvivGsAlvkiiee 236
                 ++ik++ka  ++Pv+    i +  + + l+e+gad  i  s ++ + +e
  MMETSP1137-20121227|5539_1  66 KMIKEIKAAVTIPVMAKSRIGHFVECQILQEIGAD-YIDESEVLTMADE 113
                 789999**99***9999999999889999999988.6666666655555 PP

  == domain 2    score: 10.4 bits;  conditional E-value: 0.00012
   TIGR00262 187 kelikkvkalskkPvl..vGFGiskkeqvkelkelgadgvivGsAlvkiieek 237
                 ++l+k+  ++ + Pv+     G++ +  +  + +lg dgv vGs + k  +  
  MMETSP1137-20121227|5539_1 194 YALVKQTAEVGRLPVVnfAAGGVATPADAALMMQLGMDGVFVGSGIFKSADPA 246
                 689999999*****96223569***********************99976655 PP

>> TIGR01740  pyrF: orotidine 5'-phosphate decarboxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.0      0.11        44      71     117 ..     138     180 ..     131     205 .. 0.73
   2 ?    8.7   0.0   0.00069      0.28     186     215 ..     223     252 ..     206     253 .. 0.85

  Alignments for each domain:
  == domain 1    score: 1.5 bits;  conditional E-value: 0.11
   TIGR01740  71 slikegvdmvnvhgvaGkksvealveaaseeserkllavaeltskgs 117
                 ++i+eg+ m+  +g aG + v ++v+ a+      +  + +l ++++
  MMETSP1137-20121227|5539_1 138 RRIAEGAAMIRTKGEAGTGNVVEAVRHARTL----MREIKKLKTMDE 180
                 578999***********99999999998863....344555555555 PP

  == domain 2    score: 8.7 bits;  conditional E-value: 0.00069
   TIGR01740 186 eealekgadviivGRgIyaaedPkeaakki 215
                 + +++ g d + vG gI++++dP++ a++i
  MMETSP1137-20121227|5539_1 223 ALMMQLGMDGVFVGSGIFKSADPAKRARAI 252
                 55677899******************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (314 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       209  (0.0509508); expected 82.0 (0.02)
Passed bias filter:                      146  (0.0355924); expected 82.0 (0.02)
Passed Vit filter:                        20  (0.00487567); expected 4.1 (0.001)
Passed Fwd filter:                        10  (0.00243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.32u 0.13s 00:00:00.45 Elapsed: 00:00:00.45
# Mc/sec: 920.99
//
Query:       MMETSP1137-20121227|5540_1  [L=221]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (221 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       170  (0.0414432); expected 82.0 (0.02)
Passed bias filter:                      133  (0.0324232); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.18s 00:00:00.40 Elapsed: 00:00:00.32
# Mc/sec: 911.55
//
Query:       MMETSP1137-20121227|5542_1  [L=811]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.024   12.8   0.0      0.051   11.7   0.0    1.5  1  TIGR03057 xxxLxxG_by_4: X-X-X-Leu-X-X-Gly heptad repeats


Domain annotation for each model (and alignments):
>> TIGR03057  xxxLxxG_by_4: X-X-X-Leu-X-X-Gly heptad repeats
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   1.2e-05     0.051       6      25 ..     384     403 ..     380     406 .. 0.89

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 1.2e-05
   TIGR03057   6 dGagqLasGagqLasGanqL 25 
                 dG++q+a+G++q  +G+  L
  MMETSP1137-20121227|5542_1 384 DGSSQAADGTNQVPDGSRRL 403
                 89************999766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (811 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        77  (0.0187713); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.14s 00:00:00.61 Elapsed: 00:00:00.54
# Mc/sec: 1982.28
//
Query:       MMETSP1137-20121227|5543_1  [L=69]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (69 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        66  (0.0160897); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.55
# Mc/sec: 165.59
//
Query:       MMETSP1137-20121227|5544_1  [L=220]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (220 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        65  (0.0158459); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.15s 00:00:00.35 Elapsed: 00:00:00.24
# Mc/sec: 1209.90
//
Query:       MMETSP1137-20121227|5545_1  [L=300]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (300 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       137  (0.0333983); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.17s 00:00:00.43 Elapsed: 00:00:00.32
# Mc/sec: 1237.40
//
Query:       MMETSP1137-20121227|5546_1  [L=335]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.2e-90  301.4   0.0    1.5e-90  301.1   0.0    1.1  1  TIGR00652 DapF: diaminopimelate epimerase


Domain annotation for each model (and alignments):
>> TIGR00652  DapF: diaminopimelate epimerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  301.1   0.0   3.6e-94   1.5e-90       3     268 ..      53     332 ..      51     334 .. 0.90

  Alignments for each domain:
  == domain 1    score: 301.1 bits;  conditional E-value: 3.6e-94
   TIGR00652   3 FlkmhGlgNdFvlvdevdeelvkeeaelvrkvcdrhtgvgaDgvllvep.sseeadvklrifNsDGSeaemCGNgiRcfakfvye.....kglkekkelsvetlaglikveveeenkkvkvdmgepkfkkeeipltvekeeekeellalev........l.vvdvGnPHlvvfvedvekldleelgklleaheefpegvNvefvevkkedeiklrvyERGageTlaCGtGavAsavvalklgktkkkvtvhleggeLeievkedg.kvyltGpavlvlegel 268
                 F+k+hGlgNdF+lvd++ ++++  ++e++ k+cdr++gvgaDgv++v p +++ ad+++ri+NsDGSe+emCGNgiRc+a+f+        +  +   ++++tlaglik ++ +++ +++vdmg+p ++ + +p+t  ++ ++ ++ ++ +        + +v++GnPH+++fv+d++ +dl ++g+++e he fp+++Nvefv+v+++ ++k++v+ERGag TlaCGtGa+A  v+a+  g+ ++++tv+l+gg+L+ie++e++ ++++tGpav v++g++
  MMETSP1137-20121227|5546_1  53 FAKYHGLGNDFLLVDSRSSKEPPITPEQAVKMCDRNFGVGADGVIFVLPaNDDAADCQMRIYNSDGSEPEMCGNGIRCMARFISTlapseAKASSDGVYTISTLAGLIKPKLLQDG-EIRVDMGQPILQGSRVPTTL-PADVDGRVIKAPLsvggsdfaVtCVSMGNPHAIIFVDDLDAIDLATIGPQIECHEVFPAKTNVEFVQVLSPTHLKMKVWERGAGPTLACGTGACALLVAAVLEGRAERSATVTLPGGDLQIEWREEDdTIFMTGPAVPVFSGVY 332
                 9*****************9999999************************788899***************************976111113334445689****************.******************96.44444555555555566675527****************************************************************************************************99888*************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (335 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        88  (0.0214529); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.27u 0.17s 00:00:00.44 Elapsed: 00:00:00.33
# Mc/sec: 1339.89
//
Query:       MMETSP1137-20121227|5547_1  [L=589]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (589 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        53  (0.0129205); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.16s 00:00:00.54 Elapsed: 00:00:00.54
# Mc/sec: 1439.66
//
Query:       MMETSP1137-20121227|5548_1  [L=640]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (640 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       139  (0.0338859); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.16s 00:00:00.56 Elapsed: 00:00:00.49
# Mc/sec: 1723.94
//
Query:       MMETSP1137-20121227|5549_1  [L=1410]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00072   16.7   0.4     0.0015   15.6   0.0    1.7  2  TIGR00064 ftsY: signal recognition particle-docking protein FtsY
     0.0012   16.1   0.0     0.0027   15.0   0.0    1.5  1  TIGR03596 GTPase_YlqF: ribosome biogenesis GTP-binding protein YlqF
      0.004   13.9   0.0     0.0069   13.1   0.0    1.3  1  TIGR00959 ffh: signal recognition particle protein


Domain annotation for each model (and alignments):
>> TIGR00064  ftsY: signal recognition particle-docking protein FtsY
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   1.1e-06    0.0015      37     107 ..     396     469 ..     380     478 .. 0.72
   2 ?   -3.2   0.1       0.6   8.2e+02      13      63 ..    1052    1102 ..    1050    1112 .. 0.74

  Alignments for each domain:
  == domain 1    score: 15.6 bits;  conditional E-value: 1.1e-06
   TIGR00064  37 ekkvkeeeklkellkeelkealkeileketklel...kelkeekkpnvillvGvNGvGKTttiaKlakllkkeg 107
                 e +++++++ ++  +++l   +++  +k  ++++   +++++++ p+ +l+ Gv G+GK t++ Kl ++l k++
  MMETSP1137-20121227|5549_1 396 EAELTSAQHNDSSYHHSLGIRVHKLVKKAVEIKCelgRAQSTSQPPFKVLVAGVEGSGKSTSVNKLISKLVKRD 469
                 555555555555555555555555555555555555677888899999******************99998875 PP

  == domain 2    score: -3.2 bits;  conditional E-value: 0.6
   TIGR00064   13 vLleaDvglevvekiieelkkelkekkvkeeeklkellkeelkealkeile 63  
                  +L++ +++ + v  i eel+k ++e+  +  ek+++l+k+ ++++l +++ 
  MMETSP1137-20121227|5549_1 1052 ELVMPELANTSVLLIQEELRKMKAEHVQRPIEKMRDLIKKLFSDKLFPNTM 1102
                  567777777888888888988888888888888888888888877776544 PP

>> TIGR03596  GTPase_YlqF: ribosome biogenesis GTP-binding protein YlqF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0     2e-06    0.0027      93     143 ..     416     466 ..     390     474 .. 0.87

  Alignments for each domain:
  == domain 1    score: 15.0 bits;  conditional E-value: 2e-06
   TIGR03596  93 kilkaikkllkekkeklkakglkkkairalvvGiPNvGKStliNrlakkkv 143
                 ++ k++kk+++ k e  +a+  +++++++lv G+   GKSt +N+l++k v
  MMETSP1137-20121227|5549_1 416 RVHKLVKKAVEIKCELGRAQSTSQPPFKVLVAGVEGSGKSTSVNKLISKLV 466
                 688999999999999999*****************************9966 PP

>> TIGR00959  ffh: signal recognition particle protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.1   0.0   5.1e-06    0.0069      94     127 ..     436     469 ..     407     513 .. 0.77

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 5.1e-06
   TIGR00959  94 laekkpavillvGLqGsGKtttaaKlakklkkke 127
                  ++++p ++l++G+ GsGK t+++Kl +kl k++
  MMETSP1137-20121227|5549_1 436 STSQPPFKVLVAGVEGSGKSTSVNKLISKLVKRD 469
                 456889********************99977665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1410 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       152  (0.0370551); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                        21  (0.00511945); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.89u 0.14s 00:00:01.03 Elapsed: 00:00:00.63
# Mc/sec: 2954.04
//
Query:       MMETSP1137-20121227|5550_1  [L=123]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (123 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       101  (0.0246221); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.13s 00:00:00.29 Elapsed: 00:00:00.32
# Mc/sec: 507.33
//
Query:       MMETSP1137-20121227|5551_1  [L=229]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (229 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       119  (0.0290102); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.17s 00:00:00.39 Elapsed: 00:00:00.40
# Mc/sec: 755.64
//
Query:       MMETSP1137-20121227|5552_1  [L=543]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     1e-217  721.7   9.5   1.1e-217  721.5   6.6    1.0  1  TIGR02346 chap_CCT_theta: T-complex protein 1, theta subunit
     1e-114  382.0  13.8   1.3e-114  381.7   9.5    1.0  1  TIGR02339 thermosome_arch: thermosome, various subunits, archaeal
    6.5e-90  299.9  11.6    7.9e-90  299.6   8.1    1.0  1  TIGR02342 chap_CCT_delta: T-complex protein 1, delta subunit
    2.5e-86  288.2   9.1    3.2e-86  287.9   6.3    1.0  1  TIGR02343 chap_CCT_epsi: T-complex protein 1, epsilon subunit
    7.4e-86  286.8  12.9    9.6e-86  286.4   9.0    1.0  1  TIGR02340 chap_CCT_alpha: T-complex protein 1, alpha subunit
    1.2e-84  282.5   9.5    1.6e-84  282.1   6.6    1.0  1  TIGR02344 chap_CCT_gamma: T-complex protein 1, gamma subunit
      6e-83  276.7   9.9    7.4e-83  276.4   6.8    1.0  1  TIGR02345 chap_CCT_eta: T-complex protein 1, eta subunit
    1.2e-67  226.6  12.1    1.5e-67  226.3   8.4    1.0  1  TIGR02341 chap_CCT_beta: T-complex protein 1, beta subunit
    1.5e-64  216.3   7.7      2e-64  215.9   5.3    1.1  1  TIGR02347 chap_CCT_zeta: T-complex protein 1, zeta subunit
    3.6e-10   36.8  10.7    7.3e-07   25.8   0.4    2.4  2  TIGR02348 GroEL: chaperonin GroL


Domain annotation for each model (and alignments):
>> TIGR02346  chap_CCT_theta: T-complex protein 1, theta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  721.5   6.6  2.8e-220  1.1e-217       1     530 [.      11     537 ..      11     538 .. 0.99

  Alignments for each domain:
  == domain 1    score: 721.5 bits;  conditional E-value: 2.8e-220
   TIGR02346   1 giasllkeGyrhlsgleeavlknieaikelseitrtslGPngmnklvinhleklfvtnDaatilrelevqhPaakllvlaskaqeeelGDgtnlvlvlagelLekaeelirlGlspseiikGyelalkkalevLeelvvl..evkdleekeelikalkaslsskqlgnedilaelvakaiitvlPknsekfnvdnirvvkllGgslsdsevlkGlvlkreaegsvkrvkdakvavfscpldtattetkGtvLlknaeelldyskgeekkiealikeiadsgvkvivaggsvsdlalhyvekykilvlkisskfelrrlckvvgatalvrlsapspeelGlvdsvkveeigskkvtvikqeeedskistivLrGstknllddieraidDGvnvvkalvkdsrllpGagateieLakklkkyaeklkgleqyaikkfaeafeiiPrtlaenaGlnanevlskLyaahkkgnkslgidiekesdavkdvkeekiyDllaakkfaiklateaavtvLkvDqiimakpaGGPkkeqk 530
                 g++ +lkeG++h+sgleea +kni+a k+ls  +rtslGPngmnk+vinhl+klf+t+D+ati++elevqhPaakllv+ask+qe+e+GDgtn+v+vlagelL +aeel++ Gl++se+i Gy++al kalevLe+lv+   +++ l++  el +a+k+++++kq+gned++a+ +a+a++  +P+n+ +fnvdn+rv+k++G ++s  +v+kGl l+r   g++++v+dak++v+  p+d +ttetkGtvLlk+aeel  y+ +ee  +e++ik+ia +g++v+v g s+++la+h+vekyk++vlk++skfelrrlc++ ga+ lvrl+ p pe+lG+++ v+++eigs+  t++ qe ++sk++tiv+rGs  n+++d+erai+DGvnvvk+++kd r++pGaga+e+ La +l++y+e+++gl+qyai+kf+ + e++Prtlaen+Gl+a+++++++yaahk g +s+gidi ++++     k+  ++Dll +kk a+klat+aavtvL+vDqiimak+aGGPk++++
  MMETSP1137-20121227|5552_1  11 GVQGMLKEGTKHMSGLEEATFKNIDAAKQLSSCVRTSLGPNGMNKMVINHLDKLFITSDSATIVNELEVQHPAAKLLVMASKMQESEVGDGTNFVVVLAGELLIQAEELLKNGLHISEVIGGYNTALAKALEVLETLVTHsaSMSVLKSPTELAEAIKPVIAAKQWGNEDLFASKIAEACVLAMPENPAAFNVDNVRVAKIIGNAVSGTTVVKGLCLTRSVLGTIHEVRDAKIVVYGVPVDSSTTETKGTVLLKSAEELKAYNNSEEDALEKTIKAIAATGANVLVCGQSIGELAMHFVEKYKMMVLKVPSKFELRRLCRTTGANNLVRLEPPAPEDLGTCKHVYLKEIGSTWCTIFDQEADNSKTATIVVRGSSMNIMEDVERAIEDGVNVVKSMTKDARFVPGAGAAELLLADALQQYGEAQPGLDQYAIQKFGLSLEVVPRTLAENSGLDATNIVAQMYAAHKAGSTSVGIDIVEGTT-----KDCGVLDLLVTKKEALKLATDAAVTVLRVDQIIMAKQAGGPKAPAQ 537
                 5799**************************************************************************************************************************************9955566789999*************************************************************************************************************************************************************************************************************************************************************************************************************************************99998.....6889**************************************9876 PP

>> TIGR02339  thermosome_arch: thermosome, various subunits, archaeal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  381.7   9.5  3.1e-117  1.3e-114       4     521 .]      15     527 ..      13     527 .. 0.95

  Alignments for each domain:
  == domain 1    score: 381.7 bits;  conditional E-value: 3.1e-117
   TIGR02339   4 ilkegtqrtkg.rdalksniaaakavaeavkstlGPrGlDkmLvdslGdvtitnDGatilkemdiehPaakllvevaktqdeevgDGtttavvlaGeLlekaedLleqdihPtviveGyrkaaekalevideiaek.idve...dkellkkvaetsltskavaeeakdklaelvveavkqvvekredgkykvdldnikiekkkGgsiedtelveGivvDkevvhegmPkrvenakialldaplevekteidaklkitspdqlkkfldqeeallkemvdkiadaGanvvicqkgiDdlaqhylakkGilavrrvkksDieklaratGakivsslkeieesdLGeaelveerkvgedk.lvfvegaknakavtillrGgtehvvdeleRaleDalkvvksvledgkvvaGgGavevelakrlreyaakieGreqlaveafadaleeiprilaenaGldpidalvelRakhekegnknagvdvftgeiedmlelgvieplkvkeqaiksateaatlilriDdviaak 521
                 +lkegt++ +g ++a+ +ni aak ++  v+++lGP G++km+++ l  + it D ati++e++++hPaakllv ++k q++evgDGt  +vvlaGeLl +ae+Ll++++h + ++ Gy++a  kalev+++++++ ++++       l + ++  +++k+ +  ++d+ a+ + ea   v+ +  ++   +++dn+++ k  G++++ t +v+G+ + + v+  g  ++v++aki++  +p++   te++  + ++s ++lk++ + ee++l++++++ia++Ganv++c ++i +la h+++k  ++ ++   k ++++l r tGa+ +  l+   ++dLG+ + v  +++g    ++f ++a+n+k+ ti++rG++ ++++++eRa+eD ++vvks+ +d + v+G+Ga e+ la+ l++y +   G +q a+++f  +le +pr+laen+Gld+ +++ ++ a+h+  g +++g+d+++g  +d    gv++ l  k++a+k at+aa+ +lr+D++i ak
  MMETSP1137-20121227|5552_1  15 MLKEGTKHMSGlEEATFKNIDAAKQLSSCVRTSLGPNGMNKMVINHLDKLFITSDSATIVNELEVQHPAAKLLVMASKMQESEVGDGTNFVVVLAGELLIQAEELLKNGLHISEVIGGYNTALAKALEVLETLVTHsASMSvlkSPTELAEAIKPVIAAKQWG--NEDLFASKIAEAC--VLAMP-ENPAAFNVDNVRVAKIIGNAVSGTTVVKGLCLTRSVL--GTIHEVRDAKIVVYGVPVDSSTTETKGTVLLKSAEELKAYNNSEEDALEKTIKAIAATGANVLVCGQSIGELAMHFVEKYKMMVLKVPSKFELRRLCRTTGANNLVRLEPPAPEDLGTCKHVYLKEIGSTWcTIFDQEADNSKTATIVVRGSSMNIMEDVERAIEDGVNVVKSMTKDARFVPGAGAAELLLADALQQYGEAQPGLDQYAIQKFGLSLEVVPRTLAENSGLDATNIVAQMYAAHKA-GSTSVGIDIVEGTTKD---CGVLDLLVTKKEALKLATDAAVTVLRVDQIIMAK 527
                 69********9567999*******************************************************************************************************************976514433333556788888999****995..8999999999999..55554.456899***************************9998..56799***************************************************************************************************************************98625688999*********************************************************************************************************6.9***********9887...69*****************************986 PP

>> TIGR02342  chap_CCT_delta: T-complex protein 1, delta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  299.6   8.1   1.9e-92   7.9e-90      11     516 ..      30     526 ..      21     527 .. 0.93

  Alignments for each domain:
  == domain 1    score: 299.6 bits;  conditional E-value: 1.9e-92
   TIGR02342  11 rtsnivaakavadairtslGpkGmdkliqekkGeviitndGatilkqlevlhpaakllvelskaqdieaGdGttsvvvlaGalldaaekllekgihptiisesfqsaadealkilkelsip.vdls...drealiksattslsskvvsqyssllaplavdavlkvidsekdknvdlkdikvvkklGgtiddtelieGvvltqkasksaggptriekakigliqfqlsapktdmenqvvvsdyaqmdrvlkeerkyilnlvkkikkaganvlliqksilrdavndlalhflakkkilvvkdiereevefisktlGckpvasidkltadklGkaelveevksddskivkitG.vknagktvsvlvrGsnklvideaerslhdalcvirslvkkraliaGGGapeieialklskkarelkGvesyivrafadalevipytlaenaGlnpikvvtelrnrhaqGektaGisvrkggitdileeevlqpllvtksavtlasetvrsilkiddivlt 516
                  + ni aak ++ ++rtslGp+Gm+k++ ++  ++ it d ati+++lev hpaakllv  sk q++e GdGt  vvvlaG ll  ae+ll++g+h + +  ++++a+++al++l+ l ++  ++s       l ++++  +++k   +   + + +a+ +vl + ++      ++ +++v k +G+++  t +++G+ lt+ +    g +  +++aki +    + +  t+++  v+++  +++    + e   + + +k+i+++ganvl+  +si      +la+hf++k k++v+k   + e+  +++t G++ +  ++  +++ lG+ + v   +  +s    i    ++++kt +++vrGs   ++++ er++ d + v++s+ k+  +++G Ga e+ +a +l+++ + + G ++y +++f  +lev+p tlaen+Gl++ ++v+++  +h+ G ++ Gi++++g+++d     vl  l+ +k a++la+++  ++l++d i+++
  MMETSP1137-20121227|5552_1  30 TFKNIDAAKQLSSCVRTSLGPNGMNKMVINHLDKLFITSDSATIVNELEVQHPAAKLLVMASKMQESEVGDGTNFVVVLAGELLIQAEELLKNGLHISEVIGGYNTALAKALEVLETLVTHsASMSvlkSPTELAEAIKPVIAAKQWGNEDLFASKIAEACVLAMPEN--PAAFNVDNVRVAKIIGNAVSGTTVVKGLCLTRSVL---GTIHEVRDAKIVVYGVPVDSSTTETKGTVLLKSAEELKAYNNSEEDALEKTIKAIAATGANVLVCGQSI-----GELAMHFVEKYKMMVLKVPSKFELRRLCRTTGANNLVRLEPPAPEDLGTCKHVYLKEI-GSTWCTIFDqEADNSKTATIVVRGSSMNIMEDVERAIEDGVNVVKSMTKDARFVPGAGAAELLLADALQQYGEAQPGLDQYAIQKFGLSLEVVPRTLAENSGLDATNIVAQMYAAHKAGSTSVGIDIVEGTTKDC---GVLDLLVTKKEALKLATDAAVTVLRVDQIIMA 526
                 6789***************************************************************************************************************9976541343333378889999999*****999999999*********99876..55566669***********************9998...89*************************************************************998886.....89***********************************************998853333.344444444045799*******************************************************************************************************************99886...68887888899******************997 PP

>> TIGR02343  chap_CCT_epsi: T-complex protein 1, epsilon subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  287.9   6.3   7.8e-89   3.2e-86      21     530 ..      21     525 ..      10     527 .. 0.93

  Alignments for each domain:
  == domain 1    score: 287.9 bits;  conditional E-value: 7.8e-89
   TIGR02343  21 krlkGl.eakksniaaakavasilrtslGpkGldkiliskdgditvtndGatilekmdldeeiakllvelsksqdeeiGdGttgvvvlasalleqaeklldkGihpikiaeGfekaakvavekleeia.eeisvde.dnketllkaaktslgskivskskrrlaeiavdavlavadlerkdvdfdlikvegkvGgsledtklikGilidkdlshpqmkkevkdakiailtcpfeppkpktkhkldissveeykklekyekekfeemiddikksGanlvicqwGfddeanhlllqndlpavrwvgGkeleliaiatgGrivprfeelseeklGkaklvreksfGttkdrllvieqskeskavtilvrGgnkliieeakrslhdalcvvrnlikdsrivyGGGaaeiacslaveeeadklsgveqyairafaealeeiplalaensGldpietlsevkakqlkeknpalGvdcleeGtndmkelkvletligkkqqillatqlvkmilkiddvis 530
                 k + Gl ea+  ni aak ++s +rtslGp+G++k++i++ +++ +t d ati+++++++++ akllv  sk q++e+GdGt  vvvla+ ll qae+ll++G+h   +  G+++a+  a+e le +  ++ s+++ +   +l +a k  +++k    +++ +a    +a +  +  +    ++d ++v + +G+ ++ t ++kG+ + + +       ev+daki +   p +     tk  + ++s+ee k+ ++ e++ +e+ i+ i  +Gan+++c     + a h++ + ++  ++  +  el  +  +tg + + r+e    e+lG++k v+ k++G+t   ++  +++++sk+ ti+vrG++  i+e+ +r+++d + vv+ + kd r v G Gaae+ ++ a+++  + ++g++qyai+ f+ +le +p +laensGld  + ++++ a   k   +++G+d  e  t+   +  vl+ l++kk+ ++lat     +l++d++i+
  MMETSP1137-20121227|5552_1  21 KHMSGLeEATFKNIDAAKQLSSCVRTSLGPNGMNKMVINHLDKLFITSDSATIVNELEVQHPAAKLLVMASKMQESEVGDGTNFVVVLAGELLIQAEELLKNGLHISEVIGGYNTALAKALEVLETLVtHSASMSVlKSPTELAEAIKPVIAAKQWG-NEDLFASKIAEACVLAMPENPAAFNVDNVRVAKIIGNAVSGTTVVKGLCLTRSVL--GTIHEVRDAKIVVYGVPVDSSTTETKGTVLLKSAEELKAYNNSEEDALEKTIKAIAATGANVLVCGQSIGELAMHFVEKYKMMVLKVPSKFELRRLCRTTGANNLVRLEPPAPEDLGTCKHVYLKEIGSTWCTIFD-QEADNSKTATIVVRGSSMNIMEDVERAIEDGVNVVKSMTKDARFVPGAGAAELLLADALQQYGEAQPGLDQYAIQKFGLSLEVVPRTLAENSGLDATNIVAQMYAAH-KAGSTSVGIDIVEGTTK---DCGVLDLLVTKKEALKLATDAAVTVLRVDQIIM 525
                 456676258899****************************************************************************************************************9865144555541466789999******99865.5677777777777778888999****************************99765..6789*****************************************************************************************************************************9877654.56789*************************************************************************************************98865.677889****9876665...579***************************997 PP

>> TIGR02340  chap_CCT_alpha: T-complex protein 1, alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  286.4   9.0   2.4e-88   9.6e-86      11     530 ..      27     527 ..      16     531 .. 0.90

  Alignments for each domain:
  == domain 1    score: 286.4 bits;  conditional E-value: 2.4e-88
   TIGR02340  11 edvrkqnvlavvavanivktslGPvGldkmlvddvGdvtitndGatilkklevehPaakvlvelaqlqdkevGdGttsvvilaaellkradelvkrkvhPtsvisGyrlalkeavkyikeklavsvee..lgk.ealinvaktslsskiislesdlfsnlvvdavlavkvtnekgetkyPikavnilkahGksaresllvkGyalnctvasqqmpkrvkkakialldfnlqkaklklgvqivvedpeklekirkreadivkerikkilkaGanvvlttkGiddlalkylveagvmavrrv.kkedlkriakatGatlvssladleGeetleasllGeaeevveeriaddelili.kgtkkkksasiilrGandvlldemerslhdalcvvkrtleskkvvaGgGaveaalsiyleelattlgsreqlaiaefaealliiPkvlavnaakdstelvaklralhaaaqlkeekkklkflGldlsngkirdnveaGvlePavskvkslkfateaaitilriddliklk 530
                 e++  +n+ a+ +++  v+tslGP G++km+++ +  + it d ati+++lev+hPaak+lv  +++q+ evGdGt  vv+la ell +a+el+k+ +h + vi Gy+ al +a++ ++  ++ s++   l + + l +++k  +++k  ++e dlf+  + +a +       ++ + + +++v + k  G++++ +++vkG  l  +v      ++v++aki++  + +     +   +++++ +e+l++  + e d + + ik i ++Ganv++  + i +la+  +ve+  m v +v +k +l+r+ ++tGa+ ++ l          +  lG++++v+ ++i+   + ++ + ++++k+a+i++rG+   +++++er++ d + vvk +    + v+G+Ga e  l+  l+++ ++    +q ai++f  +l ++P++la n++ d+t++va++ a h+a         + ++G+d+++g+ +d    Gvl+  v+k   lk at+aa+t+lr+d++i  k
  MMETSP1137-20121227|5552_1  27 EEATFKNIDAAKQLSSCVRTSLGPNGMNKMVINHLDKLFITSDSATIVNELEVQHPAAKLLVMASKMQESEVGDGTNFVVVLAGELLIQAEELLKNGLHISEVIGGYNTALAKALEVLETLVTHSASMsvLKSpTELAEAIKPVIAAKQWGNE-DLFASKIAEACVLAMP---ENPAAFNVDNVRVAKIIGNAVSGTTVVKGLCLTRSVL--GTIHEVRDAKIVVYGVPVDSSTTETKGTVLLKSAEELKAYNNSEEDALEKTIKAIAATGANVLVCGQSIGELAMH-FVEKYKMMVLKVpSKFELRRLCRTTGANNLVRLEPP------APEDLGTCKHVYLKEIGSTWCTIFdQEADNSKTATIVVRGSSMNIMEDVERAIEDGVNVVKSMTKDARFVPGAGAAELLLADALQQYGEAQPGLDQYAIQKFGLSLEVVPRTLAENSGLDATNIVAQMYAAHKAG--------STSVGIDIVEGTTKD---CGVLDLLVTKKEALKLATDAAVTVLRVDQIIMAK 527
                 456779**************************************************************************************************************9988776655431143325799999*******99976.6776666666443333...346789***********************99987765..56689********************************************************************96.6777666665552788***********988887555......4556***************9977626788999*************************************************************************************************999765........4568*******9987...5****************************99765 PP

>> TIGR02344  chap_CCT_gamma: T-complex protein 1, gamma subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  282.1   6.6   3.9e-87   1.6e-84       5     521 ..      16     525 ..      14     529 .. 0.93

  Alignments for each domain:
  == domain 1    score: 282.1 bits;  conditional E-value: 3.9e-87
   TIGR02344   5 lnqntkresG.rkaqlsniqaakavadiirttlGpkamlkmlldplGgivltndGnailreidvahpaakslielsrtqdeevGdGttsviilaGellaaaepfleknihptvivraykkaledalkvleel...sipvdv.edeakllklvkssigtkfvsrwsdlvvdlaldavktvkleerngrklevdikryakvekipGGeiedsavlkGvllnkdvthpkmrrkienprivlldcpleykkgesqtnveilkeedwnrllqleeeevkklceeiiavkpdlvitekGvsdlaqhyllkanisairrvrktdnnriarvsGativnrveelkesdvGtgaGlfevkkiGdeyftfl.teckdpkactillrGaskdvlnevernlqdalavarnvllepklvpGGGatelavsvklkkkakklegveqlpyeavadaleviprtlvqncGvnvirtltelrakhaqeekkalGidGetGkivdmkekgiweplavklqtiktaiesavlllriddivs 521
                 l++ tk  sG ++a  +ni+aak ++  +rt+lGp+ m km+++ l  + +t d  +i+ e++v+hpaak l+  s+ q+ evGdGt  v++laGell++ae++l++ +h + ++ +y++al +al+vle l   s ++ v ++ ++l++++k  i++k  ++ +  ++++a   v ++  e  n   ++vd    ++v ki G +++ ++v+kG+ l + v  +    ++++ +iv+  +p++   +e++  v +++ e+++   + ee+ ++k  + i a+ +++++  + + +la h++ k ++ +++   k +  r+ r +Ga+ + r e    +d+Gt +  +++k iG  + t + +e ++ k+ ti++rG+s +++++ver ++d+++v++ +  ++++vpG Ga+el  + +l++  ++  g++q+ ++  + +lev+prtl++n+G ++   ++++ a h+++ ++++Gid  +G+    k+ g+ + l+ k++++k a ++av +lr+d+i+ 
  MMETSP1137-20121227|5552_1  16 LKEGTKHMSGlEEATFKNIDAAKQLSSCVRTSLGPNGMNKMVINHLDKLFITSDSATIVNELEVQHPAAKLLVMASKMQESEVGDGTNFVVVLAGELLIQAEELLKNGLHISEVIGGYNTALAKALEVLETLvthSASMSVlKSPTELAEAIKPVIAAKQWGNEDLFASKIAEACVLAMP-E--NPAAFNVD---NVRVAKIIGNAVSGTTVVKGLCLTRSVLGT--IHEVRDAKIVVYGVPVDSSTTETKGTVLLKSAEELKAYNNSEEDALEKTIKAIAATGANVLVCGQSIGELAMHFVEKYKMMVLKVPSKFELRRLCRTTGANNLVRLEPPAPEDLGT-CKHVYLKEIGSTWCTIFdQEADNSKTATIVVRGSSMNIMEDVERAIEDGVNVVKSMTKDARFVPGAGAAELLLADALQQYGEAQPGLDQYAIQKFGLSLEVVPRTLAENSGLDATNIVAQMYAAHKAG-STSVGIDIVEGTT---KDCGVLDLLVTKKEALKLATDAAVTVLRVDQIIM 525
                 6778888888457899***************************************************************************************************************99976222455666367799************999888788888865554433.3..46777998...58899**********************976..46899**************************************************************************************************************8.78889*********977258999*******************************************************************************************************99.699********86...557999*************************986 PP

>> TIGR02345  chap_CCT_eta: T-complex protein 1, eta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  276.4   6.8   1.8e-85   7.4e-83       6     522 ..      15     528 ..      13     529 .. 0.93

  Alignments for each domain:
  == domain 1    score: 276.4 bits;  conditional E-value: 1.8e-85
   TIGR02345   6 llkegtdtsqGkgq.lisninacvaiaeilkttlGPrGmdklivskek.avvsndGatilklldivhPaakllvdiaksqdsevGdGttsvvvlagellkeakplieeglhpqliiralrealklaieklkeiavelde.eksekrevleklaatalsskliaeekeffskmvvdavlsldkd..dldkkliGvkkvkGGaledsvlvkGvafkktfsyaGfeqqPkkfanPkilllnvelelkaekdnaeirvedvedykeivdaewkiileklekivesGanvvlsklsiGdlatqyfadrdifcaGrvsdedlkrvvkatGasilsavsdleadvlGkcalfeekqiGserynlf.tggekakactlilrGgaeqfleeaerslhdaimivrralkakkivaGGGaielelskllrekskkidgkqqliieavakaleviPrslaenaGfdsieilnklrkkhakkgekwaGvdieteeildaleafvwePllvkknalkaateaaatilsvdetikakk 522
                 +lkegt +  G       ni+a+++++  ++t lGP Gm+k++ ++     ++ d ati+++l++ hPaakllv  +k q+sevGdGt  vvvlagell +a +l+++glh   +i ++++al  a+e l+ +  + ++ +  +    l +  +  + +k   +e  f sk+    vl + ++  + + + + v k+ G a++ + +vkG+ + ++   + +e     +++ ki++  v ++  + ++   + ++++e+ k+  ++e + + + ++ i ++Ganv++  +siG+la  +  + +++     s+ +l+r+ ++tGa+ l   +    + lG+c+    k iGs+   +f ++++++k++t+++rG++ +++e++er+++d + +v+   k+ ++v+G Ga el l+  l+++ +   g  q  i+ ++ +lev+Pr+laen G+d+++i++++ ++h+  g++  G+di + ++ d+    v + l+ kk+alk at+aa t+l vd+ i+ak+
  MMETSP1137-20121227|5552_1  15 MLKEGTKHMSGLEEaTFKNIDAAKQLSSCVRTSLGPNGMNKMVINHLDkLFITSDSATIVNELEVQHPAAKLLVMASKMQESEVGDGTNFVVVLAGELLIQAEELLKNGLHISEVIGGYNTALAKALEVLETLVTHSASmSVLKSPTELAEAIKPVIAAKQWGNEDLFASKIAEACVLAMPENpaAFNVDNVRVAKIIGNAVSGTTVVKGLCLTRSVLGTIHE-----VRDAKIVVYGVPVDSSTTETKGTVLLKSAEELKAYNNSEEDALEKTIKAIAATGANVLVCGQSIGELAMHFVEKYKMMVLKVPSKFELRRLCRTTGANNLVRLEPPAPEDLGTCKHVYLKEIGSTWCTIFdQEADNSKTATIVVRGSSMNIMEDVERAIEDGVNVVKSMTKDARFVPGAGAAELLLADALQQYGEAQPGLDQYAIQKFGLSLEVVPRTLAENSGLDATNIVAQMYAAHKA-GSTSVGIDIVEGTTKDC---GVLDLLVTKKEALKLATDAAVTVLRVDQIIMAKQ 528
                 589999999998652689***********************9888765499*******************************************************************************99988777644555567788889999*****9999888888877778888777224566799*********************9998877777.....567899***********************************************************************999888999********************************************446899******************************************************************************************************99.9********99997766...79999*************************9987 PP

>> TIGR02341  chap_CCT_beta: T-complex protein 1, beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  226.3   8.4   3.5e-70   1.5e-67      19     515 ..      33     527 ..      15     530 .. 0.91

  Alignments for each domain:
  == domain 1    score: 226.3 bits;  conditional E-value: 3.5e-70
   TIGR02341  19 sfvgaiavgdlvkstlgpkgmdkillsasseasivvtndgatilksialdnpaakvlvdiskvqddevgdgttsvtvlaaellreaeklvnkkihpqtiiegyrlatkaalealkksavdnssdkv.kfredllkiarttlsskilsqdkdhfaklavdavlrlk...gstnleaiqiikklggklddsyldegfllekkigvnqpkrienakiliantaldtdkvkvfgsrvrvdstaklaelekaekekmkekvekilkhninvfinrqliynypeqlfadagvmaiehadfegverlalvtggeivstfdepelvklgscdlieeiligedkllkfs.gvklgeactivlrgatqqildeaerslhdalavlsqtvkesrtvlgggcaellmakaveeeaqkvagkkalaveafakalrqlptiladnagfdsaelvaklraahaegnstagldleegeiadlrklgivesyklkravvssaaeaaevllrvdniikaa 515
                  +  a  +   v+++lgp gm+k+++      ++ +t d ati+ ++ ++ paak+lv  sk+q+ evgdgt  v+vla ell +ae+l+++ +h   +i gy +a++ ale l++   +++s +v k   +l +  +  +++k   ++    +k+a   vl +     + n++++++ k++g  ++ + + +g+ l + +   + + + +aki++   ++d+      g+ v + s+  l   +++e + + + ++ i + + nv++  q i +    +  + ++m ++      + rl+  tg +    ++ p    lg c+ +    ig      f    +  ++ tiv+rg++ +i+++ er++ d + v+   +k++r v g+g+aell+a+a+++  + ++g +  a++ f+ +l+ +p  la+n+g+d++++va++ aah+ g +++g+d+ eg+  d    g+++ +  k+  +  a++aa  +lrvd+ii a+
  MMETSP1137-20121227|5552_1  33 NIDAAKQLSSCVRTSLGPNGMNKMVINHLD--KLFITSDSATIVNELEVQHPAAKLLVMASKMQESEVGDGTNFVVVLAGELLIQAEELLKNGLHISEVIGGYNTALAKALEVLETLVTHSASMSVlKSPTELAEAIKPVIAAKQWGNEDLFASKIAEACVLAMPenpAAFNVDNVRVAKIIGNAVSGTTVVKGLCLTRSVL-GTIHEVRDAKIVVYGVPVDSSTTETKGT-VLLKSAEELKAYNNSEEDALEKTIKAIAATGANVLVCGQSIGELAMHFVEKYKMMVLKVPSKFELRRLCRTTGANNLVRLEPPAPEDLGTCKHVYLKEIGSTWCTIFDqEADNSKTATIVVRGSSMNIMEDVERAIEDGVNVVKSMTKDARFVPGAGAAELLLADALQQYGEAQPGLDQYAIQKFGLSLEVVPRTLAENSGLDATNIVAQMYAAHKAGSTSVGIDIVEGTTKD---CGVLDLLVTKKEALKLATDAAVTVLRVDQIIMAK 527
                 555566777889*************98776..9********************************************************************************987655554443314557999999*******999877666788888899885222578**************************98763.4557899*****************9998.6689999**************************************************99877779*****************************9999***999888625778899******************************************************************************************************************988...599999999**********************986 PP

>> TIGR02347  chap_CCT_zeta: T-complex protein 1, zeta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  215.9   5.3   4.8e-67     2e-64      16     526 ..      28     527 ..      18     531 .. 0.91

  Alignments for each domain:
  == domain 1    score: 215.9 bits;  conditional E-value: 4.8e-67
   TIGR02347  16 aalkvnlnaakglqdvlktnlGPkGtlkmlvsgaGdikltkdGnvllkelqiqhPtasliaraaaaqdditGdGttstviligellkqaerlieeglhPrilteGleiakkealefleklki...kkeeevdrelllevartslrtkleaeladklteivvda.vlaikkdeeeidlfmveilemkhklevdtklirGlvldhGarhPdmkrkvknvyiltlnvsleyektevnsgfvyssaeereklveaerkfvddrvkkiielkkkvvekkadkgfvvinqkGidplsldllakegilalrrakrrnlerltlacGGealnsvedltpeslGyaGlvyetvigeekyt.fieevknPksvtilikgpndhtlkqikdavrdGlravknaiedkcvvaGagafeiallkklkeekksvkGkaklgveafaeallviPkvlvensGydvqevlvkledeadearevvgvdletgesivaelkgiwdnysvkkqllssatviasqlllvdevlraG 526
                 +a   n++aak l++ ++t lGP G  km+++   ++ +t d  ++++el++qhP+a+l+  a+  q+  +GdGt  +v+l+gell qae+l+++glh   ++ G+++a  +ale le l +    ++       l e+++ ++ +k      d ++  + +a vla+ ++ ++ ++  v + ++  +  + t++++Gl l   +   +  ++v+++ i++  v ++   te   +++ +saee ++  ++e   +++ +k i         +    + v++  + i +l++  + k +++ l+   + +l rl  ++G ++l  +e   pe+lG + +vy + ig    t f +e++n k+ ti+++g+  + ++ ++ a+ dG+  vk + +d+  v+Gaga e+ l+ +l+++ +   G ++ +++ f+ +l v+P++l+ensG+d++++++++ ++++++ + vg+d+  g   +++  g+ d +  kk++l+ at  a  +l vd+++ a 
  MMETSP1137-20121227|5552_1  28 EATFKNIDAAKQLSSCVRTSLGPNGMNKMVINHLDKLFITSDSATIVNELEVQHPAAKLLVMASKMQESEVGDGTNFVVVLAGELLIQAEELLKNGLHISEVIGGYNTALAKALEVLETLVThsaSMSVLKSPTELAEAIKPVIAAKQW-GNEDLFASKIAEAcVLAMPENPAAFNVDNVRVAKIIGNAVSGTTVVKGLCLTRSVL--GTIHEVRDAKIVVYGVPVDSSTTETKGTVLLKSAEELKAYNNSEEDALEKTIKAIA-------ATG--AN-VLVCGQSIGELAMHFVEKYKMMVLKVPSKFELRRLCRTTGANNLVRLEPPAPEDLGTCKHVYLKEIGSTWCTiFDQEADNSKTATIVVRGSSMNIMEDVERAIEDGVNVVKSMTKDARFVPGAGAAELLLADALQQYGEAQPGLDQYAIQKFGLSLEVVPRTLAENSGLDATNIVAQMYAAHKAGSTSVGIDIVEG---TTKDCGVLDLLVTKKEALKLATDAAVTVLRVDQIIMAK 527
                 556679******************************************************************************************************************7753222333344679999*****99964.446777777777637888899999***************************98764..67899*******************************99999999877777776654.......333..23.4555568*************************************************************999835568899*********************************************************************************************************99*****9999...56778*****************************9875 PP

>> TIGR02348  GroEL: chaperonin GroL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.8   0.4   1.8e-09   7.3e-07      16     133 ..      35     148 ..      20     175 .. 0.86
   2 !   14.6   2.6   4.4e-06    0.0018     376     523 ..     378     527 ..     374     529 .. 0.80

  Alignments for each domain:
  == domain 1    score: 25.8 bits;  conditional E-value: 1.8e-09
   TIGR02348  16 kGvdkladavkvtlGPkgrnvvleksfGaPkitkdGvtvakeieledkfenlGaklvkevasktndvaGdGtttatvlaqaivkeGlknvaaGanpielkrGiekavekvveelkkls 133
                    ++l+ +v++ lGP+g n ++  +  +  it d  t+  e+e++++     akl+  +++  +   GdGt   +vla  ++ +    +  G    e+  G ++a++k++e l++l 
  MMETSP1137-20121227|5552_1  35 DAAKQLSSCVRTSLGPNGMNKMVINHLDKLFITSDSATIVNELEVQHPA----AKLLVMASKMQESEVGDGTNFVVVLAGELLIQAEELLKNGLHISEVIGGYNTALAKALEVLETLV 148
                 556899**************99999999****************99885....778877667777789***************************************99999887654 PP

  == domain 2    score: 14.6 bits;  conditional E-value: 4.4e-06
   TIGR02348 376 vikvGaatetelkekkarvedalnatraaveeG.ivaGGGvallraaekleelkekse.dekvGveivkraleaPlrqiaenaGkdgavvvekvkekkd...eevGfnaatdeyedlveaGiidpakvtrsalqnaasiagllltteavvadk 523
                  i v  ++   + +    +ed +n  ++  ++   v+G G+a l +a++l++  e +   ++  ++    +le   r++aen+G d++ +v+++ ++++   ++vG +  +++ +   ++G++d     + al+ a+  a  +l  + ++  k
  MMETSP1137-20121227|5552_1 378 TIVVRGSSMNIMEDVERAIEDGVNVVKSMTKDArFVPGAGAAELLLADALQQYGEAQPgLDQYAIQKFGLSLEVVPRTLAENSGLDATNIVAQMYAAHKagsTSVGIDIVEGTTK---DCGVLDLLVTKKEALKLATDAAVTVLRVDQIIMAK 527
                 555666666668888889*********99877538****************9665554356677888888899999**************9999877541115677777777665...58******99***************9999888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (543 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       181  (0.0441248); expected 82.0 (0.02)
Passed bias filter:                       99  (0.0241346); expected 82.0 (0.02)
Passed Vit filter:                        20  (0.00487567); expected 4.1 (0.001)
Passed Fwd filter:                        10  (0.00243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.58u 0.17s 00:00:00.75 Elapsed: 00:00:00.71
# Mc/sec: 1009.44
//
Query:       MMETSP1137-20121227|5553_1  [L=175]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (175 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        56  (0.0136519); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.14s 00:00:00.33 Elapsed: 00:00:00.50
# Mc/sec: 461.96
//
Query:       MMETSP1137-20121227|5554_1  [L=538]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (538 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       117  (0.0285227); expected 82.0 (0.02)
Passed bias filter:                      103  (0.0251097); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.15s 00:00:00.50 Elapsed: 00:00:00.51
# Mc/sec: 1392.36
//
Query:       MMETSP1137-20121227|5555_1  [L=238]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (238 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        83  (0.020234); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.15s 00:00:00.36 Elapsed: 00:00:00.35
# Mc/sec: 897.53
//
Query:       MMETSP1137-20121227|5556_1  [L=915]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.2e-75  252.3   4.2    1.3e-74  249.7   2.9    1.9  1  TIGR00955 3a01204: pigment precursor permease
    1.5e-60  202.9   0.0    2.6e-60  202.1   0.0    1.3  1  TIGR00956 3a01205: pleiotropic drug resistance family protein
    2.3e-26   90.7   0.3    2.3e-26   90.7   0.2    2.2  2  TIGR02857 CydD: thiol reductant ABC exporter, CydD subunit
    3.5e-24   83.4   0.5    5.9e-24   82.7   0.3    1.2  1  TIGR03864 PQQ_ABC_ATP: ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system
    1.1e-23   81.3   0.5    1.6e-23   80.7   0.4    1.1  1  TIGR03375 type_I_sec_LssB: type I secretion system ATPase
    1.6e-23   81.2   0.1    2.6e-23   80.6   0.1    1.1  1  TIGR01188 drrA: daunorubicin resistance ABC transporter, ATP-binding protein
    6.5e-23   78.9   0.3    1.3e-22   77.8   0.2    1.5  1  TIGR01842 type_I_sec_PrtD: type I secretion system ATPase
    2.7e-22   77.1   0.0    5.8e-22   76.0   0.0    1.4  1  TIGR03608 L_ocin_972_ABC: putative bacteriocin export ABC transporter, lactococcin 972 group
    1.3e-21   75.1   0.4      2e-21   74.5   0.3    1.2  1  TIGR02673 FtsE: cell division ATP-binding protein FtsE
    3.8e-21   73.5   0.2    8.1e-21   72.4   0.1    1.5  1  TIGR02982 heterocyst_DevA: ABC exporter ATP-binding subunit, DevA family
    7.1e-21   72.2   0.6    1.4e-20   71.2   0.4    1.5  1  TIGR02868 CydC: thiol reductant ABC exporter, CydC subunit
    7.6e-21   72.7   0.5    1.3e-20   71.9   0.3    1.3  1  TIGR00960 3a0501s02: type II secretory pathway family protein
    1.1e-20   71.9   0.3    1.7e-20   71.3   0.2    1.3  1  TIGR03410 urea_trans_UrtE: urea ABC transporter, ATP-binding protein UrtE
    1.4e-20   71.6   0.0    2.3e-20   70.8   0.0    1.3  1  TIGR00972 3a0107s01c2: phosphate ABC transporter, ATP-binding protein
    2.6e-20   70.0   0.1    4.4e-20   69.3   0.0    1.3  1  TIGR03796 NHLM_micro_ABC1: NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein
    3.3e-20   70.4   0.0    5.4e-20   69.7   0.0    1.3  1  TIGR02315 ABC_phnC: phosphonate ABC transporter, ATP-binding protein
    4.7e-20   69.9   0.2    7.7e-20   69.2   0.1    1.2  1  TIGR00968 3a0106s01: sulfate ABC transporter, ATP-binding protein
    6.4e-20   69.4   0.1    1.6e-19   68.1   0.1    1.6  1  TIGR01978 sufC: FeS assembly ATPase SufC
    1.2e-19   68.5   0.2      2e-19   67.9   0.1    1.2  1  TIGR03265 PhnT2: putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein
    3.3e-19   67.0   0.3    5.6e-19   66.2   0.2    1.3  1  TIGR03873 F420-0_ABC_ATP: proposed F420-0 ABC transporter, ATP-binding protein
    7.1e-19   65.8   0.3    1.2e-11   42.3   0.0    2.2  2  TIGR01166 cbiO: cobalt ABC transporter, ATP-binding protein
    1.2e-18   64.7   0.2    2.1e-18   64.0   0.1    1.2  1  TIGR02203 MsbA_lipidA: lipid A export permease/ATP-binding protein MsbA
    2.2e-17   60.9   0.1    3.8e-17   60.1   0.1    1.3  1  TIGR02314 ABC_MetN: D-methionine ABC transporter, ATP-binding protein
    2.8e-17   60.3   0.5    8.4e-17   58.7   0.3    1.7  1  TIGR03797 NHLM_micro_ABC2: NHLM bacteriocin system ABC transporter, ATP-binding protein
    5.3e-17   60.1   0.3    1.1e-16   59.1   0.2    1.4  1  TIGR03771 anch_rpt_ABC: anchored repeat-type ABC transporter, ATP-binding subunit
    9.8e-17   58.6   0.1    1.5e-16   58.0   0.1    1.2  1  TIGR02204 MsbA_rel: ABC transporter, permease/ATP-binding protein
    1.3e-16   58.6   0.1      3e-16   57.4   0.1    1.4  1  TIGR02211 LolD_lipo_ex: lipoprotein releasing system, ATP-binding protein
    3.1e-16   57.2   0.9    5.5e-16   56.4   0.6    1.3  1  TIGR03258 PhnT: 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT
    3.2e-16   57.4   0.1    5.6e-16   56.6   0.0    1.3  1  TIGR01189 ccmA: heme ABC exporter, ATP-binding protein CcmA
    3.9e-16   57.0   0.3    1.2e-09   35.8   0.0    2.2  2  TIGR02324 CP_lyasePhnL: phosphonate C-P lyase system protein PhnL
    4.7e-16   56.8   0.4    8.3e-16   56.0   0.3    1.3  1  TIGR02142 modC_ABC: molybdate ABC transporter, ATP-binding protein
    2.2e-15   54.4   0.2    3.3e-15   53.8   0.2    1.2  1  TIGR01187 potA: polyamine ABC transporter, ATP-binding protein
    3.1e-15   53.3   0.1    4.9e-15   52.7   0.1    1.2  1  TIGR01846 type_I_sec_HlyB: type I secretion system ATPase
    3.3e-15   54.2   0.1    5.9e-15   53.4   0.1    1.4  1  TIGR03740 galliderm_ABC: lantibiotic protection ABC transporter, ATP-binding subunit
    5.5e-15   53.5   0.1    9.5e-15   52.7   0.1    1.4  1  TIGR03411 urea_trans_UrtD: urea ABC transporter, ATP-binding protein UrtD
    8.2e-15   52.8   0.5    8.3e-07   26.6   0.1    2.2  2  TIGR02769 nickel_nikE: nickel import ATP-binding protein NikE
    2.3e-14   50.7   0.0    3.4e-14   50.1   0.0    1.1  1  TIGR01193 bacteriocin_ABC: ABC-type bacteriocin transporter
      5e-14   50.3   0.1    9.1e-14   49.4   0.0    1.4  1  TIGR01184 ntrCD: nitrate ABC transporter, ATP-binding proteins C and D
    9.5e-14   48.9   0.1    1.4e-13   48.3   0.1    1.2  1  TIGR01288 nodI: nodulation ABC transporter NodI
    2.1e-13   48.3   0.1    3.1e-13   47.7   0.1    1.1  1  TIGR03522 GldA_ABC_ATP: gliding motility-associated ABC transporter ATP-binding subunit GldA
    5.3e-13   46.7   0.1    9.8e-13   45.8   0.1    1.4  1  TIGR02770 nickel_nikD: nickel import ATP-binding protein NikD
    8.4e-13   45.3   0.3    2.7e-12   43.6   0.2    1.7  1  TIGR00958 3a01208: antigen peptide transporter 2
    1.3e-12   43.2   0.1    1.9e-12   42.8   0.1    1.0  1  TIGR01257 rim_protein: rim ABC transporter
    2.9e-12   44.5   0.3    4.7e-12   43.8   0.2    1.3  1  TIGR01277 thiQ: thiamine ABC transporter, ATP-binding protein
    3.1e-12   43.7   0.0    7.3e-07   25.9   0.0    2.1  2  TIGR03719 ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family
    3.4e-12   43.4   0.1    3.3e-07   26.9   0.1    2.1  2  TIGR02633 xylG: D-xylose ABC transporter, ATP-binding protein
    8.9e-12   42.6   0.3      1e-10   39.1   0.2    2.1  1  TIGR03005 ectoine_ehuA: ectoine/hydroxyectoine ABC transporter, ATP-binding protein EhuA
    2.4e-11   41.4   1.4    3.6e-07   27.8   0.3    2.2  2  TIGR02323 CP_lyasePhnK: phosphonate C-P lyase system protein PhnK
    5.9e-11   39.5   0.1    1.8e-10   37.9   0.1    1.6  1  TIGR01192 chvA: glucan exporter ATP-binding protein
    1.8e-10   37.5   1.5    5.9e-05   19.2   0.0    2.1  2  TIGR00630 uvra: excinuclease ABC subunit A
    2.6e-10   37.3   0.1    1.2e-05   21.9   0.0    2.1  2  TIGR03269 met_CoM_red_A2: methyl coenzyme M reductase system, component A2
    4.7e-09   33.6   0.1    8.8e-09   32.7   0.0    1.3  1  TIGR01186 proV: glycine betaine/L-proline transport ATP binding subunit
    7.3e-08   29.2   0.0    1.4e-07   28.3   0.0    1.4  1  TIGR01194 cyc_pep_trnsptr: cyclic peptide transporter
    3.7e-07   27.3   0.1      0.004   14.0   0.0    2.1  2  TIGR03415 ABC_choXWV_ATP: choline ABC transporter, ATP-binding protein
    1.4e-06   23.9   0.1    2.1e-06   23.3   0.1    1.2  1  TIGR00957 MRP_assoc_pro: multi drug resistance-associated protein (MRP)
    2.7e-05   19.6   0.0      4e-05   19.0   0.0    1.1  1  TIGR01271 CFTR_protein: cystic fibrosis transmembrane conductor regulator (CFTR)
     0.0014   15.5   0.0     0.0021   15.0   0.0    1.2  1  TIGR02788 VirB11: P-type DNA transfer ATPase VirB11
     0.0027   13.5   0.0     0.0039   13.0   0.0    1.1  1  TIGR03348 VI_IcmF: type VI secretion protein IcmF
     0.0079   13.2   0.1      0.014   12.4   0.0    1.3  1  TIGR03819 heli_sec_ATPase: helicase/secretion neighborhood ATPase
     0.0082   13.7   0.1      0.016   12.7   0.1    1.5  1  TIGR02322 phosphon_PhnN: phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN
  ------ inclusion threshold ------
      0.013   12.6   0.0      0.022   11.8   0.0    1.3  1  TIGR02782 TrbB_P: P-type conjugative transfer ATPase TrbB
      0.015   11.4   0.0      0.021   10.8   0.0    1.1  1  TIGR00929 VirB4_CagE: type IV secretion/conjugal transfer ATPase, VirB4 family
      0.018   12.8   0.0      0.035   11.8   0.0    1.4  1  TIGR00150 HI0065_YjeE: ATPase, YjeE family
      0.027   11.8   0.0      0.047   11.0   0.0    1.3  1  TIGR00073 hypB: hydrogenase accessory protein HypB
      0.027   10.7   0.0      0.059    9.6   0.0    1.5  1  TIGR00954 3a01203: peroxysomal long chain fatty acyl transporter
      0.029   11.6   0.0      0.046   11.0   0.0    1.2  1  TIGR03167 tRNA_sel_U_synt: tRNA 2-selenouridine synthase
      0.057   11.0   0.1       0.12   10.0   0.0    1.4  1  TIGR00231 small_GTP: small GTP-binding protein domain
      0.067   10.6   0.0       0.12    9.8   0.0    1.3  1  TIGR00235 udk: uridine kinase


Domain annotation for each model (and alignments):
>> TIGR00955  3a01204: pigment precursor permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  249.7   2.9   2.2e-76   1.3e-74      33     489 ..     273     728 ..     248     865 .. 0.80

  Alignments for each domain:
  == domain 1    score: 249.7 bits;  conditional E-value: 2.2e-76
   TIGR00955  33 rkkpekellknvsGvaksGellAvlGsSGaGKtTLlnalafrsekglkvsgdvllnGekveakemraisayvqqddlfiptltvrehLmfsahlrlkrrltkkekrerveevleelgLrkcadtrigvpgrvkglSgGerkRlalaselltdPilLfcDEPTsGLDsfsaasvvkvLkklaqkgktviltiHQPsselfelfdkiillaeG.rvvylGspeeavkffselglpcPenynpadFvlkvlavepgseee.sretiekicdaeaksklsreveentnlasgke.........kklvkdseneekikykasfltqflvllkRsllsvlrdplllkvrllqvivv......avligliylgqeltqkgvqningalFllltemtFqtvfavinvftaelpvflREtasglYrlsaYylaktlaelPlliilpllflsivYwmiglksgalkfltalllvvlvanvatsf 489
                  k+ +k +l++vs ++ +G ++A++G+SG+GKtTL+n+l  r + g+   g v +nG   +  +  +  ++v qdd+    ltv ++L+++a+lrl+++  + ek + v++v++ l+L+k ++ ++g ++  +g+SgG++kR+ ++ el+t P++Lf+DEPTsGLD +    + + L  l ++g t+i++iHQP   +f+lf++++ll eG   +y+G++e    +++++g++ Pe +npad++++v  + +++++  + +  +  c ++     +++  + +   s ++         ++  +d+  +   k +a+  + +++l+ R++ ++    + ++   ++ + +      a+++g   ++   ++ ++      lF ++  +t+ + +++ +v      ++ RE++s + ++ a ++a tl    + +++ l++++i+Y ++  +++++ f+++ +   l  +++ s 
  MMETSP1137-20121227|5556_1 273 LKATKKYVLRDVSAHFPNGSMVALMGASGSGKTTLMNTLLDRVPYGIPE-GIVRVNGVVDGLAKAANLTGFVPQDDIVHHNLTVFQNLYYHAMLRLPADKPHAEKLHLVQQVVHVLSLEKVQNVVVGNEE-NRGISGGQKKRVNIGMELVTMPSVLFLDEPTSGLDGAATIALARCLAMLRRSGITIICVIHQPRFAVFQLFTHLLLLGEGgGQIYSGRVEYIEGYLTSFGFKRPELENPADWMIDVACNLEKRHTPdGEADRSFECPRDLYAAWNKHHRASAL--SPSSvwhrgdpppRDAAADAAMMVPRK-TAPSRVAVYYLVGRAFRQTAVGDVXIS--CVFLVFIallnapALITGDWSWDSLPSKLTA---GNLLFGIVIGVTHRQDYGNQKV------ILYREVNSSM-SVLALFVAITLKACLVGFFQTLAYTIITYIIAAPQQNFVIFFITWFGFCLW-WISFSH 728
                 34478999***************************************99.77***************************************************************************776.6****************************************************************************875268**********************************999988876433333333333333322222222211..111123444577766666666666566.789999999*****9988765443333..3333334001222444444444433333333...3357888888888888887666......689**98876.9999************************************99988866554.444443 PP

>> TIGR00956  3a01205: pleiotropic drug resistance family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  202.1   0.0   4.4e-62   2.6e-60     767    1022 ..     269     519 ..     224     530 .. 0.87

  Alignments for each domain:
  == domain 1    score: 202.1 bits;  conditional E-value: 4.4e-62
   TIGR00956  767 yevkikkekrvlLdevdGwvkPGkltALmGasGAGkttLlnvLaeRvttGvitegdrlvngrkld.ssFqRsiGYvqqqDlHletstvreaLrfsAylRqpkevskkekneyveevikllelesyadAvvGvpGe.GLnveqRkrltigveLvAkPklllFlDePtsGLDsqtawsivkllrkladaGqailCtiHqPsailleeFDrLLllqkGGktvYfGdlGensktlieYFekhGaekcpeeanPAewmLevig 1022
                    +k+k+ k+ +L +v+ ++  G++ ALmGasG GkttL+n+L +Rv  G+ + g++ vng     +  +  +G+v q+D+  ++ tv   L + A+lR p++ +++ek + v++v+++l le+ ++ vvG   + G++  q+kr+ ig+eLv  P ++lFlDePtsGLD  ++ ++ + l  l  +G +i+C iHqP   +++ F +LLll  GG  +Y G +    + +  Y  ++G +  pe +nPA+wm++v  
  MMETSP1137-20121227|5556_1  269 VGLKLKATKKYVLRDVSAHFPNGSMVALMGASGSGKTTLMNTLLDRVPYGIPE-GIVRVNGVVDGlAKAANLTGFVPQDDIVHHNLTVFQNLYYHAMLRLPADKPHAEKLHLVQQVVHVLSLEKVQNVVVGNEENrGISGGQKKRVNIGMELVTMP-SVLFLDEPTSGLDGAATIALARCLAMLRRSGITIICVIHQPRFAVFQLFTHLLLLGEGGGQIYSGRV----EYIEGYLTSFGFK-RPELENPADWMIDVAC 519 
                  3468999*******************************************988.999999975441456789***********************************************************98877********************.99***************************************************************76....6777899999985.5999*********975 PP

>> TIGR02857  CydD: thiol reductant ABC exporter, CydD subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   1.5      0.21        13       8      61 ..      29      82 ..      21      96 .. 0.83
   2 !   90.7   0.2   3.8e-28   2.3e-26     306     518 ..     246     465 ..     223     470 .. 0.78

  Alignments for each domain:
  == domain 1    score: 2.4 bits;  conditional E-value: 0.21
   TIGR02857  8 aallgvvsallliaqAallarvvssliaagealaelltalaalalvlllRalla 61
                + ++++ sa  + aqA++la  ++s  ++g+ +++++  ++++a+v+++R  ++
  MMETSP1137-20121227|5556_1 29 VHIAAAKSATQVRAQAQVLAAXLQSSSSKGNIAHAVMRFCLLFAAVAIARCQTG 82
                34445556677779**********************************998665 PP

  == domain 2    score: 90.7 bits;  conditional E-value: 3.8e-28
   TIGR02857 306 qpeaekapltaaass..slelenvsvayegrk.palkevsltvepgelvalvGaSGaGKstllklllgfvept..eGailvngaelaeldadswrkqiawvpQkPllfeg.tvaenirlarkdaseaevkealeragldelvk..alpqgleteiG.ergagLSgGqrqRlaLArallrdapllllDEPtahLDaeteaevlealrela.egrtvllvaHrla 518
                      +++l++a+ +  +lel++v ++ + +k  +l++vs++++ g++val+GaSG+GK+tl++ ll  v+    eG ++vng+ ++ l+++   +  ++vpQ  ++ ++ tv +n+         a+  +a +   ++++v+  +l++  +  +G e+ +g+SgGq++R+ +   l+   ++l lDEPt+ LD ++  ++ + l+ l  +g t++ v H++ 
  MMETSP1137-20121227|5556_1 246 DADDFDRELKTAQIIpiTLELQQVGLKLKATKkYVLRDVSAHFPNGSMVALMGASGSGKTTLMNTLLDRVPYGipEGIVRVNGV-VDGLAKA--ANLTGFVPQDDIVHHNlTVFQNLYYHAMLRLPADKPHAEKLHLVQQVVHvlSLEKVQNVVVGnEENRGISGGQKKRVNIGMELVTMPSVLFLDEPTSGLDGAATIALARCLAMLRrSGITIICVIHQPR 465
                 223333344444433789999*****99888889**********************************99643449********.7777765..7889******9997644******976666555555555555555555441167888899999456789**********************************************978999999999976 PP

>> TIGR03864  PQQ_ABC_ATP: ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.7   0.3   9.7e-26   5.9e-24       6     191 ..     270     462 ..     264     478 .. 0.83

  Alignments for each domain:
  == domain 1    score: 82.7 bits;  conditional E-value: 9.7e-26
   TIGR03864   6 glsfaygkrralddvsltvakgefvaLLGpnGaGkstLfs.lltrL.yeakegeikvaGldlrrapkealarlGvvfqqstlDldlsveqnlryhaaLh...Glsraeaeerieealarlglaeraeekv.....reLnGGhrrrveiarallhePklLLlDeatvGLDiesraalveevrelvreeglsvLWath 191
                 gl+ + +k+ +l+dvs + ++g++vaL+G  G+Gk+tL++ ll r+ y  +eg ++v+G+    a+ + l   G v q+  +  +l+v qnl yha L+     ++ae  + ++++++ l+l++ ++  v     r ++GG+++rv+i   l+  P++L lDe+t GLD ++  al + +  l  ++g++++   h
  MMETSP1137-20121227|5556_1 270 GLKLKATKKYVLRDVSAHFPNGSMVALMGASGSGKTTLMNtLLDRVpYGIPEGIVRVNGVVDGLAKAANL--TGFVPQDDIVHHNLTVFQNLYYHAMLRlpaDKPHAEKLHLVQQVVHVLSLEKVQNVVVgneenRGISGGQKKRVNIGMELVTMPSVLFLDEPTSGLDGAATIALARCLAMLR-RSGITIICVIH 462
                 5667778999****************************9736777768899********97666666555..69************************822233455666678899999999987764443333389***********************************999999887765.77888776655 PP

>> TIGR03375  type_I_sec_LssB: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.7   0.4   2.7e-25   1.6e-23     430     677 ..     228     481 ..     194     489 .. 0.79

  Alignments for each domain:
  == domain 1    score: 80.7 bits;  conditional E-value: 2.7e-25
   TIGR03375 430 yqqaktalesldelmklpvereeekrllsreklkGeielknvsfkYpeeekaaLknvslkikpGekvaiiGriGsGKstllklllgl..yepteGsvlldgvdirqidpadlrrnigyvpqdvtLfyG.tlrdNialgapaaedeellraaelaGvtefvk..khpkGldlqig.erGesLSgGQrqavalaRallkdppillLDEPtsalDnsseekllerLkella.dkTlvlvtH..rtslLelvdriivldkG 677
                  qqa+ +l+  ++l k++   + +++l + + +  ++el++v +k +  +k +L++vs +   G+ va++G  GsGK+tl++ ll    y   eG v ++gv     + a+l    g+vpqd    +  t+ +N+ ++a     ++  +a +l  v+++v+  +  k  +  +g e+++++SgGQ++ v +   l++ p++l+LDEPts lD ++   l + L+ l + + T++ v H  r ++ +l +++++l +G
  MMETSP1137-20121227|5556_1 228 KQQAALSLSLKQQLAKEDDADDFDRELKTAQIIPITLELQQVGLKLKATKKYVLRDVSAHFPNGSMVALMGASGSGKTTLMNTLLDRvpYGIPEGIVRVNGVVDGLAKAANL---TGFVPQDDIVHHNlTVFQNLYYHAMLRLPADKPHAEKLHLVQQVVHvlSLEKVQNVVVGnEENRGISGGQKKRVNIGMELVTMPSVLFLDEPTSGLDGAATIALARCLAMLRRsGITIICVIHqpRFAVFQLFTHLLLLGEG 481
                 35666666555555555555455555556677889**********************************************999875347889*********8877777776...69****9877664499*****999866555555666666666666511455666666754899**********************************************99988*********5556899999999999776 PP

>> TIGR01188  drrA: daunorubicin resistance ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.6   0.1   4.3e-25   2.6e-23       9     182 ..     281     462 ..     275     466 .. 0.85

  Alignments for each domain:
  == domain 1    score: 80.6 bits;  conditional E-value: 4.3e-25
   TIGR01188   9 vdgvnlkveegevfglLGPnGAGKtttikmLttllkPd..sGtarvaGyDvvrepdevRrsigvvpqkasvdedLtarenlellgely...glpkkeaeeraeellelvelkeaadkkv.....ktysgGmrrrlelaasliaqPevlfLDEPtiGLDprtrraiwdlieelkkegvtilltth 182
                 +++v+ + ++g++++l+G  G GKtt+++ L   ++    +G +rv+G  vv   +++ +  g vpq+  v ++Lt  +nl+ ++ l    + p++e+ + +++++++++l + ++  v     +  sgG+++r+++++ l++ P+vlfLDEPt+GLD  +  a+ + ++ l+++g+ti+   h
  MMETSP1137-20121227|5556_1 281 LRDVSAHFPNGSMVALMGASGSGKTTLMNTLLDRVPYGipEGIVRVNG--VVDGLAKAANLTGFVPQDDIVHHNLTVFQNLYYHAMLRlpaDKPHAEKLHLVQQVVHVLSLEKVQNVVVgneenRGISGGQKKRVNIGMELVTMPSVLFLDEPTSGLDGAATIALARCLAMLRRSGITIICVIH 462
                 7899999*********************99888777651156666666..999999999*************************9985222666667777788999999998887766622222579****************************************************98766 PP

>> TIGR01842  type_I_sec_PrtD: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.8   0.2   2.2e-24   1.3e-22     316     535 ..     263     487 ..     207     494 .. 0.85

  Alignments for each domain:
  == domain 1    score: 77.8 bits;  conditional E-value: 2.2e-24
   TIGR01842 316 elevenvslvppeekkktlkgisfalkaGealaiiGpsgsGkssLarllvGvwlp..asGsvrlDgadlkqwdretlGksiGYlPqd.veLfeGtvaeniaRfeenadaekvieaaklagvhel..ilrlpkGYdteigeg.GaaLsgGqrqRiaLaRalygdPklvvLDePnanLDeeGeqalakalkelkarkitvvvithrp..sllelvdkilvlkdGalkafG 535
                 +le+++v l    +kk++l+++s    +G+++a++G+sgsGk++L+ +l+  +++   +G vr++g+  +     +  +  G++Pqd +   + tv +n+        + +   a kl  v ++  +l+l+k  + ++g++   ++sgGq++R+ +   l  +P ++ LDeP + LD +  +ala+ l  l++ +it++ + h+p  ++ +l  ++l+l +G  + + 
  MMETSP1137-20121227|5556_1 263 TLELQQVGLKLKATKKYVLRDVSAHFPNGSMVALMGASGSGKTTLMNTLLDRVPYgiPEGIVRVNGVV-DGL--AKAANLTGFVPQDdIVHHNLTVFQNLYYHAMLRLPADKPHAEKLHLVQQVvhVLSLEKVQNVVVGNEeNRGISGGQKKRVNIGMELVTMPSVLFLDEPTSGLDGAATIALARCLAMLRRSGITIICVIHQPrfAVFQLFTHLLLLGEGGGQIYS 487
                 6899999999999*************************************998863369******984.333..3455778*****64888899*****9765554445555667777777766226899********9762679********************************************************997622689999999999999877765 PP

>> TIGR03608  L_ocin_972_ABC: putative bacteriocin export ABC transporter, lactococcin 972 group
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.0   0.0   9.5e-24   5.8e-22       5     195 ..     272     465 ..     268     470 .. 0.80

  Alignments for each domain:
  == domain 1    score: 76.0 bits;  conditional E-value: 9.5e-24
   TIGR03608   5 skkfkdkeilkklslkiekGelvaivGesGsGKstlLnilglle..kkdsgkvilegkekaklkskkaskllreklgylFqnfaLlenetveenlelalkl...kkkskkekekkkkevlekvglekklkkki.....yelsgGekqRvalarillkeselilADEPtgsLDkknreevlellkelkeegktiiivtHdpe 195
                 + k ++k +l+++s ++ +G++va++G sGsGK+tl+n l         +g v ++g                +  g++ q+  +  n tv +nl    +l     k + ek +++++v++ + lek ++  +       +sgG+k+Rv +   l++ +++++ DEPt+ LD     ++ ++l  l+++g tii+v H+p 
  MMETSP1137-20121227|5556_1 272 KLKATKKYVLRDVSAHFPNGSMVALMGASGSGKTTLMNTLLDRVpyGIPEGIVRVNGVVDG-------LAKAANLTGFVPQDDIVHHNLTVFQNLYYHAMLrlpADKPHAEKLHLVQQVVHVLSLEKVQNVVVgneenRGISGGQKKRVNIGMELVTMPSVLFLDEPTSGLDGAATIALARCLAMLRRSGITIICVIHQPR 465
                 5677899*******************************87543311345677777777622.......222345679*****99999*******9754333111345667888888999999999888765552221167**********************************************************986 PP

>> TIGR02673  FtsE: cell division ATP-binding protein FtsE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.5   0.3   3.3e-23     2e-21       3     199 ..     265     466 ..     263     481 .. 0.81

  Alignments for each domain:
  == domain 1    score: 74.5 bits;  conditional E-value: 3.3e-23
   TIGR02673   3 elekvskeya.agveaLkdvslkiekgeflfltGasGaGkttllklllgaek..psrGevevagedvarlrerelpllRrkigvvfqDfkllkdrtvlenvala..lev.rgkkeeeiqkrveevlelvgledkakal.....peelsgGeqqRvaiaRaivnkPelllaDePtGnlDdelserildllkelnkrGttvivathdeel 199
                 el++v ++ + ++  +L+dvs ++ +g+++ l+GasG+Gkttl++ ll +      +G v+v+g          l++     g v qD  + ++ tv++n+     l++ + k+++e  + v++v++++ le+ ++++      + +sgG ++Rv i   +v+ P++l  DePt  lD + +  + + l  l ++G+t+i + h+ ++
  MMETSP1137-20121227|5556_1 265 ELQQVGLKLKaTKKYVLRDVSAHFPNGSMVALMGASGSGKTTLMNTLLDRVPygIPEGIVRVNGVV-D-----GLAKAANLTGFVPQDDIVHHNLTVFQNLYYHamLRLpADKPHAEKLHLVQQVVHVLSLEKVQNVVvgneeNRGISGGQKKRVNIGMELVTMPSVLFLDEPTSGLDGAATIALARCLAMLRRSGITIICVIHQPRF 466
                 7888888887467789*****************************999876522579******964.3.....3444445579999999999999999999643114441344555666789999999999987765422111567**********************************************************9765 PP

>> TIGR02982  heterocyst_DevA: ABC exporter ATP-binding subunit, DevA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.4   0.1   1.3e-22   8.1e-21      15     204 ..     275     466 ..     267     481 .. 0.83

  Alignments for each domain:
  == domain 1    score: 72.4 bits;  conditional E-value: 1.3e-22
   TIGR02982  15 elrkqvlfdinleiepgeiviltGpsGsGkttll.tliggl.rsvqeGelkvlgkelkgasekelvqvrrkiGyifqahnllesltaeqnvrmalelk..eklsakeakakaeelleavglee.....rldykpedlsgGqkqrvaiaralvarPklvladePtaaldkksgrevvellqklareqgttillvthdnri 204
                 +++k vl d++ +  +g +v l G+sGsGkttl+ tl+  +   + eG ++v g  ++g     l +    +G++ q   +++ lt+ qn+   + l+  ++  ++e+ + ++++++ + le+       +   + +sgGqk+rv i   lv+ P++++ dePt+ ld  ++ ++   l  l r  g ti+ v h +r 
  MMETSP1137-20121227|5556_1 275 ATKKYVLRDVSAHFPNGSMVALMGASGSGKTTLMnTLLDRVpYGIPEGIVRVNGV-VDG-----LAKAANLTGFVPQDDIVHHNLTVFQNLYYHAMLRlpADKPHAEKLHLVQQVVHVLSLEKvqnvvVGNEENRGISGGQKKRVNIGMELVTMPSVLFLDEPTSGLDGAATIALARCLAML-RRSGITIICVIHQPRF 466
                 6899****************************98457766524578888888664.344.....55566789******************9877655411666778888999999999999996665545677889*********************************9999999988776.668**********995 PP

>> TIGR02868  CydC: thiol reductant ABC exporter, CydC subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.2   0.4   2.4e-22   1.4e-20     317     530 .]     245     464 ..     196     464 .. 0.78

  Alignments for each domain:
  == domain 1    score: 71.2 bits;  conditional E-value: 2.4e-22
   TIGR02868 317 vaeasapaaeaaas.ekptlelrdlsvsypgaee.vlkgvsldlepGervavvGasGaGKstLlallaglld..plkGevtldgvsvaslsesevrrvvsvlaqdaHlFdt.tvreNlrlarpda..tdeellaaLervgLadwlraLpdGldtklg.eggarlSGGerqRlalARaLladapvllLDEPtehLDaeteeelledLl.aaeegrtvvlvthrl 530
                  ++ + +++ ++a+   +tlel+++  + +  ++ vl++vs++ ++G+ va++GasG+GK+tL+++l+  ++    +G v ++gv v  l   + +++  +++qd  + +  tv +Nl   +     +d+  ++ L+ v+   ++ +L++  + ++g e+ + +SGG+++R+ +   L++   vl LDEPt +LD ++  +l + L+    +g t++ v h++
  MMETSP1137-20121227|5556_1 245 DDADDFDRELKTAQiIPITLELQQVGLKLKATKKyVLRDVSAHFPNGSMVALMGASGSGKTTLMNTLLDRVPygIPEGIVRVNGV-VDGL--AKAANLTGFVPQDDIVHHNlTVFQNLYYHAMLRlpADKPHAEKLHLVQQVVHVLSLEKVQNVVVGnEENRGISGGQKKRVNIGMELVTMPSVLFLDEPTSGLDGAATIALARCLAmLRRSGITIICVIHQP 464
                 233333333333333579************99999********************************998873347999*****4.3343..34578999*****98876449*****876654435788888899999999999999999999998345677******************************************996778899999999985 PP

>> TIGR00960  3a0501s02: type II secretory pathway family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.9   0.3   2.2e-22   1.3e-20       2     198 ..     264     464 ..     263     481 .. 0.80

  Alignments for each domain:
  == domain 1    score: 71.9 bits;  conditional E-value: 2.2e-22
   TIGR00960   2 ikfeqvskaykgaaelaldnvtvkiekGelvflvGhsGaGkstllklilgiek..psaGkirvsgqdltklrdrevpflrrqiGivfqdfkllsdrtvydnval..alriiGvkgre.ieervsaalekvGlkdka.....kalPvqlsgGeqqrvaiaravvnkPallladePtgnlddelsrdilelleevnraGttvlvathde 198
                 ++++qv  + k++++  l +v+ + ++G++v l+G sG+Gk+tl++ +l +      +G +rv+g     l      +  +  G v qd  + ++ tv++n+     lr+   k+++   + v+++++ + l++ +     ++    +sgG+++rv+i   +v  P++l+ dePt+ ld + +  + + l  ++r G+t++   h+ 
  MMETSP1137-20121227|5556_1 264 LELQQVGLKLKATKKYVLRDVSAHFPNGSMVALMGASGSGKTTLMNTLLDRVPygIPEGIVRVNGVV-DGLA-----KAANLTGFVPQDDIVHHNLTVFQNLYYhaMLRLPADKPHAeKLHLVQQVVHVLSLEKVQnvvvgNEENRGISGGQKKRVNIGMELVTMPSVLFLDEPTSGLDGAATIALARCLAMLRRSGITIICVIHQP 464
                 5799******************************************999886411468999*99974.4443.....334567999***9999999****99752246665555543133445555555555544411111667789*******************************************************99975 PP

>> TIGR03410  urea_trans_UrtE: urea ABC transporter, ATP-binding protein UrtE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.3   0.2   2.8e-22   1.7e-20       7     205 ..     272     478 ..     264     494 .. 0.76

  Alignments for each domain:
  == domain 1    score: 71.3 bits;  conditional E-value: 2.8e-22
   TIGR03410   7 evaYgesevlrdvslevekgevvavlGrngvGkttllkalvgllk..vksGeielegeditklkpeervkaGiayvpqGreifpkltveenlelglealkkk......ekkipeeiyelFPvlkemlkRrgGd.....LsGGqqqqlaiaRaLvtePklllLDePteGiqPsiikeiekvikelakekdlaillveqvldfal.eladrylvl 205
                 +++  +  vlrdvs + ++g++va++G  g Gkttl+ +l+  ++  + +G ++++g     ++  +++++  ++vpq   +  +ltv  nl   +  +  +      + ++ +++ ++   l+++++   G+     +sGGq++ + i+  Lvt P +l LDePt G+  +    +++ +  l++ ++++i+ v ++  fa+ +l  ++l+l
  MMETSP1137-20121227|5556_1 272 KLKATKKYVLRDVSAHFPNGSMVALMGASGSGKTTLMNTLLDRVPygIPEGIVRVNGV----VDGLAKAANLTGFVPQDDIVHHNLTVFQNLYYHAMLRLPAdkphaeKLHLVQQVVHVL-SLEKVQNVVVGNeenrgISGGQKKRVNIGMELVTMPSVLFLDEPTSGLDGAATIALARCLAMLRR-SGITIICVIHQPRFAVfQLFTHLLLL 478
                 45556678**********************************9983346899999885....46677888999*******************8765544333123221233334444333.246666666665455559*******************************************9998.59999999988888752555555555 PP

>> TIGR00972  3a0107s01c2: phosphate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.8   0.0   3.9e-22   2.3e-20       7     206 ..     271     467 ..     265     478 .. 0.78

  Alignments for each domain:
  == domain 1    score: 70.8 bits;  conditional E-value: 3.9e-22
   TIGR00972   7 lklfygekealkdvnleikknkvtaliGpsGcGkstllrslnrlndlveevrieGkvllegkdiydkkldvvelrkkvGmvfqkpn.pfpmsiydnvayg..lrlkgikdkkeldeiveesLkkaalwdevkdkl..kksalsLsGGqqqrlciaralavePevlLlDePtsaLDpiatekieeliqeLkkk.ytivivthnmqqa 206
                 lkl  ++k +l+dv+ ++++ +++al+G sG+Gk+tl+   n l d v+    eG v ++g  ++d    ++   +  G v q      + ++++n+ y   lrl   k ++e  ++v++ ++  +l  +v++ +  +++  ++sGGq++r+ i   l + P vl lDePts LD  at  +   ++ L+++ +ti+ v h+  +a
  MMETSP1137-20121227|5556_1 271 LKLKATKKYVLRDVSAHFPNGSMVALMGASGSGKTTLM---NTLLDRVPYGIPEGIVRVNG--VVDGLAKAA---NLTGFVPQDDIvHHNLTVFQNLYYHamLRLPADKPHAEKLHLVQQVVHVLSLE-KVQNVVvgNEENRGISGGQKKRVNIGMELVTMPSVLFLDEPTSGLDGAATIALARCLAMLRRSgITIICVIHQPRFA 467
                 566778999***************************95...778999999999**999887..555533333...44678877654145688888888872334444344444445677766666664.66665523567789**********************************************9988********86665 PP

>> TIGR03796  NHLM_micro_ABC1: NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.3   0.0   7.4e-22   4.4e-20     472     671 ..     258     463 ..     224     481 .. 0.80

  Alignments for each domain:
  == domain 1    score: 69.3 bits;  conditional E-value: 7.4e-22
   TIGR03796 472 ekLsGkvelrnvtfgysaleapliedfslslkpGqrvAlvGgsGsGkstiak.lvaGl.yepwsGeilfDgkpreeiprevlanslalvdq.divlfegtvrdnltlwdetipeedlvrAakDAaihdvilarpggyeael...aegganlsGGqrqRleiARaLvknPsiLilDEatsaLDaetEkai...denlrrRgctciivaHR 671
                 + +  ++el++v    +a+++ +++d+s +  +G+ vAl+G+sGsGk t+   l+  + y   +G ++++g+     +    an   +v q div ++ tv +nl  +      +d  +A k   +++v+  ++ +  +++   +e+ + +sGGq++R++i   Lv+ Ps+L lDE ts LD ++  a+    + lrr g+t+i v H 
  MMETSP1137-20121227|5556_1 258 QIIPITLELQQVGLKLKATKKYVLRDVSAHFPNGSMVALMGASGSGKTTLMNtLLDRVpYGIPEGIVRVNGVVDGLAKA---ANLTGFVPQdDIVHHNLTVFQNLYYHAMLRLPADKPHAEKLHLVQQVVHVLSLEKVQNVvvgNEENRGISGGQKKRVNIGMELVTMPSVLFLDEPTSGLDGAATIALarcLAMLRRSGITIICVIHQ 463
                 5566689******************************************976144444488899******997654444...44556776637999********988887777788999*********9998886655555233467788********************************98876651115689**********994 PP

>> TIGR02315  ABC_phnC: phosphonate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.7   0.0     9e-22   5.4e-20      13     209 ..     276     467 ..     263     492 .. 0.84

  Alignments for each domain:
  == domain 1    score: 69.7 bits;  conditional E-value: 9e-22
   TIGR02315  13 ngkqalknvnleikkGelvaviGlsGaGkstllrsi.nrlve.issgsillegkevtklkkkelrklrkkigmifqeynlierltvlenvLsgrlgakstlksllglfseedkekAlelLervglaelaakradqLsGGqqqRvaiaRalaqqpklilaDEPiasLDpksskqvmdllkrinkekgitvivnlHqvdla 209
                 ++k +l++v+ ++ +G +va++G sG+Gk+tl+ ++ +r+   i +g + ++g          l k+ + +g++ q+  + ++ltv++n+   ++ + ++ k   + ++  ++   + +Le+v+   + ++    +sGGq++Rv i   l+  p++++ DEP++ LD +++  + +    + +++git+i+ +Hq  +a
  MMETSP1137-20121227|5556_1 276 TKKYVLRDVSAHFPNGSMVALMGASGSGKTTLMNTLlDRVPYgIPEGIVRVNGV--V----DGLAKAANLTGFVPQDDIVHHNLTVFQNLYYHAMLRLPADKPHAEKLHLVQQVVHVLSLEKVQNVVVGNEENRGISGGQKKRVNIGMELVTMPSVLFLDEPTSGLDGAATIALAR-CLAMLRRSGITIICVIHQPRFA 467
                 56789****************************986245533366666666553..3....4677888899******99999*********999999999999999999999999999******99999**************************************987766555.55677899*********97776 PP

>> TIGR00968  3a0106s01: sulfate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.2   0.1   1.3e-21   7.7e-20      13     189 ..     278     462 ..     267     484 .. 0.79

  Alignments for each domain:
  == domain 1    score: 69.2 bits;  conditional E-value: 1.3e-21
   TIGR00968  13 fqalddvdlevktGslvallGpsGsGkstllrviaGlek..pdsGrilleGrdvtrvkvrdreiGfvfqhyalfkhltvrdniafGleir...kkdkakikakveellelvqleklgd.....rypsqlsGGqrqrvalaralavepqvllldepfgaldakvrkelrawlrklhdevkvttvfvth 189
                   +l dv+ + ++Gs+val+G sGsGk+tl+ ++         +G ++++G  v  +       Gfv q+  + + ltv++n+ +   +r    k++a++ + v+++++++ lek+++          +sGGq++rv +   l   p vl+ldep + ld      l + l  l     +t + v h
  MMETSP1137-20121227|5556_1 278 KYVLRDVSAHFPNGSMVALMGASGSGKTTLMNTLLDRVPygIPEGIVRVNGV-VDGLAKAANLTGFVPQDDIVHHNLTVFQNLYYHAMLRlpaDKPHAEKLHLVQQVVHVLSLEKVQNvvvgnEENRGISGGQKKRVNIGMELVTMPSVLFLDEPTSGLDGAATIALARCLAMLRR-SGITIICVIH 462
                 46899**************************998544321135788999996.44555566678*********************9999877645556666677888877777776651111156678********************************9999999888887764.3566666666 PP

>> TIGR01978  sufC: FeS assembly ATPase SufC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.1   0.1   2.7e-21   1.6e-19       6     207 ..     271     467 ..     264     502 .. 0.86

  Alignments for each domain:
  == domain 1    score: 68.1 bits;  conditional E-value: 2.7e-21
   TIGR01978   6 lhvsvedkeiLkglnlevkkGevhaimGpnGsGkstLskvlaghekyevtsGeiklkgqdlleleveeraraGlflafqapeeipGvsnkeflrsalnavrka.rgeeeldllefekllkeklelleldeelleRslneGfsGGekkrneilqlallePklaiLDeiDsGlDvDalkivaegvnklreeekalliithyerll 207
                 l+++  +k +L++++ +  +G ++a+mG+ GsGk tL+++l  +  y + +G ++++g       v+  a+a    +f    +i   + + f    + a+ +   ++++ + l+  +++ + l+l ++++ ++  + n G sGG kkr +i   ++  P++  LDe  sGlD  a  ++a+++  lr++  +++ + h+ r+ 
  MMETSP1137-20121227|5556_1 271 LKLKATKKYVLRDVSAHFPNGSMVALMGASGSGKTTLMNTLLDRVPYGIPEGIVRVNGV------VDGLAKAANLTGFVPQDDIVHHNLTVFQNLYYHAMLRLpADKPHAEKLHLVQQVVHVLSLEKVQNVVVGNEENRGISGGQKKRVNIGMELVTMPSVLFLDEPTSGLDGAATIALARCLAMLRRSGITIICVIHQPRFA 467
                 6778899*************************************************995......677777777777878888888888888888877776551455667788888899999999999999********************9999999****************************************99975 PP

>> TIGR03265  PhnT2: putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.9   0.1   3.2e-21     2e-19      16     194 ..     277     463 ..     262     471 .. 0.79

  Alignments for each domain:
  == domain 1    score: 67.9 bits;  conditional E-value: 3.2e-21
   TIGR03265  16 aftalkdislsvkkgelvclLGPsGCGkttLLriiaGLekqdaG...aillggrditrlppqkrdyGivfqsYaLfPnltvaeniayGLknk...klkreevaerveelLelvglsgseekyPgq.....lsGGqqqrvaLaralalsPglLLLDePlsaLDakvrekLreelkklqrklgvttimvthd 194
                 +  +l+d+s +  +g +v+l+G sG GkttL+  +  L++   G    i+  +  +  l+ ++   G+v q   +  nltv +n+ y    +    + ++e  + v+++++++ l+++++   g      +sGGq++rv ++  l++ P++L+LDeP s LD      L + l  l r+ g+t i v h+
  MMETSP1137-20121227|5556_1 277 KKYVLRDVSAHFPNGSMVALMGASGSGKTTLMNTL--LDRVPYGipeGIVRVNGVVDGLAKAANLTGFVPQDDIVHHNLTVFQNLYYHAMLRlpaDKPHAEKLHLVQQVVHVLSLEKVQNVVVGNeenrgISGGQKKRVNIGMELVTMPSVLFLDEPTSGLDGAATIALARCLAML-RRSGITIICVIHQ 463
                 45689***************************987..677665533246667778999999999**********************98655411133555666667777777777777665544222333****************************************999877.678********97 PP

>> TIGR03873  F420-0_ABC_ATP: proposed F420-0 ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.2   0.2   9.2e-21   5.6e-19       4     213 ..     268     481 ..     263     493 .. 0.82

  Alignments for each domain:
  == domain 1    score: 66.2 bits;  conditional E-value: 9.2e-21
   TIGR03873   4 lsrvsvraggrlivddvdvtaPaGaltgllGPnGsGkstllrllaGlla..pdaGevdlagadlkalsrrararrvalveqdsdaevplsvrdvv...alGriPhrslfaadsdedaevvdr.alarvelssladrdlstlsGGerqrvhlaralaqePklllldePtnhldvsaqlellalvrelaaegvtvvvalhdlnlaa.svcdhvvvldgG 213
                    + ++a ++ ++ dv + +P+G++ +l+G  GsGk+tl++ l   +     +G v ++g+ + +l++   a     v qd   + +l+v + +   a+ r+P    +a + +  ++vv+   l +v+   + + +   +sGG+++rv++   l   P++l+ldePt  ld +a ++l + +  l  +g+t++  +h   +a+ ++  h+++l++G
  MMETSP1137-20121227|5556_1 268 QVGLKLKATKKYVLRDVSAHFPNGSMVALMGASGSGKTTLMNTLLDRVPygIPEGIVRVNGV-VDGLAK--AANLTGFVPQDDIVHHNLTVFQNLyyhAMLRLPADKPHAEKLHLVQQVVHVlSLEKVQNVVVGNEENRGISGGQKKRVNIGMELVTMPSVLFLDEPTSGLDGAATIALARCLAMLRRSGITIICVIHQPRFAVfQLFTHLLLLGEG 481
                 34455678899******************************877766541257999999997.788875..4677899*************987534478899999999888865555554313556666667889999*************************************************************99973577999999765 PP

>> TIGR01166  cbiO: cobalt ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   0.0   4.8e-07   2.9e-05       6      38 ..     279     311 ..     275     329 .. 0.92
   2 !   42.3   0.0   1.9e-13   1.2e-11     112     186 ..     389     463 ..     365     467 .. 0.86

  Alignments for each domain:
  == domain 1    score: 21.4 bits;  conditional E-value: 4.8e-07
   TIGR01166   6 evlkglnlavergevlallGanGaGkstlllhl 38 
                  vl++++ ++ +g+++al+Ga G+Gk+tl+++l
  MMETSP1137-20121227|5556_1 279 YVLRDVSAHFPNGSMVALMGASGSGKTTLMNTL 311
                 69****************************987 PP

  == domain 2    score: 42.3 bits;  conditional E-value: 1.9e-13
   TIGR01166 112 laavdisgleerpthllsgGekkrvaiagavalrpdvllldePtagldpaGaeqlleilrklreeGktvvisthd 186
                 l++v+   + +   + +sgG+kkrv i   ++  p vl+ldePt+gld+a +  l++ l  lr +G t++   h 
  MMETSP1137-20121227|5556_1 389 LEKVQNVVVGNEENRGISGGQKKRVNIGMELVTMPSVLFLDEPTSGLDGAATIALARCLAMLRRSGITIICVIHQ 463
                 45555555566777889*****************************************************98885 PP

>> TIGR02203  MsbA_lipidA: lipid A export permease/ATP-binding protein MsbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.0   0.1   3.5e-20   2.1e-18     311     524 ..     240     458 ..     201     477 .. 0.78

  Alignments for each domain:
  == domain 1    score: 64.0 bits;  conditional E-value: 3.5e-20
   TIGR02203 311 llDsppekdeGtraler...vrGkvefrnvtfrypgddrealdsislkveaGevvalvGrsGsGkstlvn.llpRF.yepdsGeillDgvdladlkLasLRrqvalvsqd.vvLFddtiaenvaYgeleevdeaeveealaaaylkdlvd..klpeGldtevGengsk.LsGGqRqRlaiaRallkdaPiLiLDeatsaLDneseRlvqaaLerlmkgRttlv 524
                 +l +++++d+  r+l+    +  ++e+++v  + + +++ +l+++s +  +G +val+G sGsGk+tl+n ll R  y + +G + ++gv      La+  +   +v qd +v  + t+++n+ Y ++  ++ ++  +a +   ++++v   +l++  +  vG++  + +sGGq++R+ i   l+    +L LDe ts LD  +  ++   L  l +   t++
  MMETSP1137-20121227|5556_1 240 QLAKEDDADDFDRELKTaqiIPITLELQQVGLKLKATKKYVLRDVSAHFPNGSMVALMGASGSGKTTLMNtLLDRVpYGIPEGIVRVNGVVD---GLAKAANLTGFVPQDdIVHHNLTVFQNLYYHAMLRLPADK-PHAEKLHLVQQVVHvlSLEKVQNVVVGNEENRgISGGQKKRVNIGMELVTMPSVLFLDEPTSGLDGAATIALARCLAMLRRSGITII 458
                 4445555555554444411156799*******************************************9857889769999**999999853...4556666678898853788899***********7776554.4566666667776611456667778898766559********************************999999999999988766665 PP

>> TIGR02314  ABC_MetN: D-methionine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.1   0.1   6.3e-19   3.8e-17      18     200 ..     278     463 ..     263     493 .. 0.76

  Alignments for each domain:
  == domain 1    score: 60.1 bits;  conditional E-value: 6.3e-19
   TIGR02314  18 ikaldnvslfvpkgqifgvigasgagkstlircvnllekp....tsgavivdgkdlttlsnaelvkarrqigmifqhfnllssrtvfgnvalplelentpkekikrkvtellalvglsdkkdsypsn..lsggqkqrvaiaralasepkvllcdeatsaldpattqsilellkeinrrlgltillithe 200
                    l +vs + p+g ++ ++gasg+gk+tl+    ll++      +g v v+g+     + a+l+    q  ++   + ++        + lp +     k ++ ++v  +l+l  + +       n  +sggqk+rv i   l + p vl+ de ts ld a+t ++   l    rr g+ti+ + h+
  MMETSP1137-20121227|5556_1 278 KYVLRDVSAHFPNGSMVALMGASGSGKTTLMNT--LLDRVpygiPEGIVRVNGVVDGLAKAANLTGFVPQDDIVHHNLTVFQNLYYHAMLRLPADKPHAEKLHLVQQVVHVLSLEKVQNVVVGNEENrgISGGQKKRVNIGMELVTMPSVLFLDEPTSGLDGAATIALARCLAM-LRRSGITIICVIHQ 463
                 35799*************************985..56664122257889999987777777888877777666644444444444444456777777788888899*******98888876555444339************************************99999875.5778*****99997 PP

>> TIGR03797  NHLM_micro_ABC2: NHLM bacteriocin system ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.7   0.3   1.4e-18   8.4e-17     452     641 ..     264     457 ..     249     463 .. 0.81

  Alignments for each domain:
  == domain 1    score: 58.7 bits;  conditional E-value: 1.4e-18
   TIGR03797 452 ievdrvtFrYekdgplvLddvslkiepGefvaivGaSGsGKStllrlLLg...FekPesGsvlyDGqdlekldvqavRrqlGvVLQngrllsg.sileniaggasltldeaw.eaarmagleeDikamPmg.lhTvi..segggtlSGGQrQRlliAralvrkPrillfDEATSALDNrtQaiVsesleklkvtRivi 641
                 +e+++v  + ++  + vL+dvs +  +G  va++GaSGsGK tl+  LL    +  P +G v   G  +++l ++a     G V Q+  +  + ++++n+  +a+l l +   +a ++  +++ ++ + +  +  v+  +e   ++SGGQ++R+ i   lv+ P +l++DE TS LD  +  +    l+ l+ + i i
  MMETSP1137-20121227|5556_1 264 LELQQVGLKLKATKKYVLRDVSAHFPNGSMVALMGASGSGKTTLMNTLLDrvpYGIP-EGIVRVNGV-VDGLAKAA--NLTGFVPQDDIVHHNlTVFQNLYYHAMLRLPADKpHAEKLHLVQQVVHVLSLEkVQNVVvgNEENRGISGGQKKRVNIGMELVTMPSVLFLDEPTSGLDGAATIALARCLAMLRRSGITI 457
                 689999999***************************************963336667.59******7.89998877..678******99876548**********7765544055556666666666766424455523577889********************************999988888888887665544 PP

>> TIGR03771  anch_rpt_ABC: anchored repeat-type ABC transporter, ATP-binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.1   0.2   1.8e-18   1.1e-16       5     177 ..     290     468 ..     286     481 .. 0.82

  Alignments for each domain:
  == domain 1    score: 59.1 bits;  conditional E-value: 1.8e-18
   TIGR03771   5 kGellgllGpnGaGkttllrailglikv..akGsvkvagkssr..kgrreiGyvpqrhefawdfpidveqtvlsGragliGllrrpkkadfaavadalervklteladrpvGe.....lsGGqrqrvlvaralavkpslllldepftGldlpsqellvelfeelagegtailmtthdlaeav 177
                 +G +++l+G  G+Gkttl+ ++l  ++    +G v+v+g   +  k+    G+vpq       + + v q +    a l  +  +p+ +    v++ ++  +l+++++  vG+     +sGGq++rv +   l + ps+l+ldep +Gld  ++  l+  +  l   g +i+ + h+   av
  MMETSP1137-20121227|5556_1 290 NGSMVALMGASGSGKTTLMNTLLDRVPYgiPEGIVRVNGVVDGlaKAANLTGFVPQDDIVH--HNLTVFQNLYYH-AMLRLPADKPHAEKLHLVQQVVHVLSLEKVQNVVVGNeenrgISGGQKKRVNIGMELVTMPSVLFLDEPTSGLDGAATIALARCLAMLRRSGITIICVIHQPRFAV 468
                 799**********************9962269*******877622556679*****87554..456666665543.4444456788888899999999999999999999996556668*********************************************************876665 PP

>> TIGR02204  MsbA_rel: ABC transporter, permease/ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.0   0.1   2.5e-18   1.5e-16     315     531 ..     241     459 ..     189     482 .. 0.78

  Alignments for each domain:
  == domain 1    score: 58.0 bits;  conditional E-value: 2.5e-18
   TIGR02204 315 lkaksdikaPaqpkalpakvrgeiefeevkfayParpdqkaldgldltvrpGetvalvGPsGaGkstlle.lllrf.ydPqsGailldGvdlreldpeelrerlalvpqdsalfaa.svleniryGrpdasdeeveaaakaaeade..fisklpeGydtllG.ergvtLsGGqkqriaiarailkdapiLLLdeatsaLdaeseqlvqqaleelmkgrttlvi 531
                 l +++d +   ++ + ++ +   +e+++v ++  a   + +l++++ +  +G  val+G sG+Gk+tl++ ll r  y   +G ++++Gv    ++ ++l     +vpqd  +  +  v++n+ y  +    ++  +a k    ++   + +l++  +  +G e+   +sGGqk+r+ i   ++    +L+Lde ts Ld  +  ++ + l+ l +   t++ 
  MMETSP1137-20121227|5556_1 241 LAKEDDADDFDRELKTAQIIPITLELQQVGLKLKATK-KYVLRDVSAHFPNGSMVALMGASGSGKTTLMNtLLDRVpYGIPEGIVRVNGVVDGLAKAANL---TGFVPQDDIVHHNlTVFQNLYYHAMLRLPADKPHAEKLHLVQQvvHVLSLEKVQNVVVGnEENRGISGGQKKRVNIGMELVTMPSVLFLDEPTSGLDGAATIALARCLAMLRRSGITIIC 459
                 5555666666667777778888899999999987765.89*****************************835557569999********96555555555...5799**99987643899***999776665555555555444441156678899999999556778********************************************99987777663 PP

>> TIGR02211  LolD_lipo_ex: lipoprotein releasing system, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.4   0.1     5e-18     3e-16      15     205 ..     275     467 ..     266     480 .. 0.81

  Alignments for each domain:
  == domain 1    score: 57.4 bits;  conditional E-value: 5e-18
   TIGR02211  15 kleievlkgvsleiekgelvaivGssGsGkstllhllggldkp....tsGevllkGkelsklssneraklrnkklGfiyq...fhhlladftalenvamPlliskkskkeakerakellekvglekri.....nkkpselsGGerqrvaiaralvnkPklvladePtgnldkktakkifelllelnkekntallvvthdlela 205
                  ++  vl++vs +  +g +va++G+sGsGk+tl+ +l  ld+      +G v ++G  ++ l     ak  n   Gf+ q    hh l+ f+ l   am  l ++k ++e  +  +++++ + lek       n++   +sGG+++rv i   lv+ P++++ dePt+ ld +++ ++ + l  l+  ++++++ v h+ ++a
  MMETSP1137-20121227|5556_1 275 ATKKYVLRDVSAHFPNGSMVALMGASGSGKTTLMNTL--LDRVpygiPEGIVRVNGV-VDGL-----AKAANL-TGFVPQddiVHHNLTVFQNLYYHAMLRLPADKPHAEKLHLVQQVVHVLSLEKVQnvvvgNEENRGISGGQKKRVNIGMELVTMPSVLFLDEPTSGLDGAATIALARCLAMLR-RSGITIICVIHQPRFA 467
                 456789****************************977..444311124778888885.3333.....333333.59**997767**********999999999999999999999999888888876511122456677*********************************99999999888776.5789999999999886 PP

>> TIGR03258  PhnT: 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.4   0.6   9.1e-18   5.5e-16      14     203 ..     271     467 ..     263     490 .. 0.76

  Alignments for each domain:
  == domain 1    score: 56.4 bits;  conditional E-value: 9.1e-18
   TIGR03258  14 lrvaygarvvlddlsleieaGellallGksGsGkttllravaGfvkadG..GrllvadrdlthlppykrnlallvqnyalfphlkveenvafG..lr..ark..qskaliaervadalkl..vqlsdaaarlpaqlsGGqqqrvalaralvvrpdvllldeplsaldaqlrasvveelkalhrelpeltvlyvthdrdea 203
                 l+++   + vl d+s +   G ++al+G sGsGkttl+  +   v      G + v +  +  l       +++ q+  +   l+v++n+ +   lr  a k    k  + ++v + l l  vq   ++++    +sGGq++rv +   lv  p vl+ldep s ld     ++   l+ l r    +t+++v h+   a
  MMETSP1137-20121227|5556_1 271 LKLKATKKYVLRDVSAHFPNGSMVALMGASGSGKTTLMNTLLDRVPYGIpeGIVRVNGV-VDGLAKAANLTGFVPQDDIVHHNLTVFQNLYYHamLRlpADKphAEKLHLVQQVVHVLSLekVQNVVVGNEENRGISGGQKKRVNIGMELVTMPSVLFLDEPTSGLDGAATIALARCLAMLRRS--GITIICVIHQPRFA 467
                 556667789********************************999855445455555543.44454444455789999999999******987533442144411334456667766554411666677899999**********************************************9885..89*******85544 PP

>> TIGR01189  ccmA: heme ABC exporter, ATP-binding protein CcmA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.6   0.0   9.3e-18   5.6e-16       5     186 ..     270     463 ..     266     470 .. 0.79

  Alignments for each domain:
  == domain 1    score: 56.6 bits;  conditional E-value: 9.3e-18
   TIGR01189   5 elaveRgervlleglsfelaaGealvveGpnGiGKttLLRilaGLlk..pesGevelndkelaeqrdelaeellylgHldglKaeLsalEnLkfyaallq......seqk.tveealekvgLsgledlpvaq.....LsAGqkrRlalarLllskaplWiLDEPttalDkegvellaellaaHlargGivlla.thq 186
                  l  +  ++ +l+++s ++  G ++++ G  G+GKttL+ +l   ++    +G v++n+    +   + a+ + ++   d + ++L++  nL ++a l        +e++  v++ ++ + L+++++++v +     +s Gqk+R+ ++  l++   +  LDEPt  lD +++  la+ la  l+r Gi+++   hq
  MMETSP1137-20121227|5556_1 270 GLKLKATKKYVLRDVSAHFPNGSMVALMGASGSGKTTLMNTLLDRVPygIPEGIVRVNGVV--DGLAKAANLTGFVPQDDIVHHNLTVFQNLYYHAMLRLpadkphAEKLhLVQQVVHVLSLEKVQNVVVGNeenrgISGGQKKRVNIGMELVTMPSVLFLDEPTSGLDGAATIALARCLAM-LRRSGITIICvIHQ 463
                 5677778899******************************9988776224689****9544..34445668899******************8777665455555433334677777888899999988853333349***********************************999999875.77777776641455 PP

>> TIGR02324  CP_lyasePhnL: phosphonate C-P lyase system protein PhnL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.0   2.7e-06   0.00016      18      56 ..     275     313 ..     264     339 .. 0.80
   2 !   35.8   0.0     2e-11   1.2e-09     150     208 ..     405     463 ..     383     472 .. 0.94

  Alignments for each domain:
  == domain 1    score: 19.0 bits;  conditional E-value: 2.7e-06
   TIGR02324  18 GvklpvlkevsleveaGelvalsGksGaGkstllkslya 56 
                  +k  vl++vs +  +G +val+G+sG+Gk tl+ +l  
  MMETSP1137-20121227|5556_1 275 ATKKYVLRDVSAHFPNGSMVALMGASGSGKTTLMNTLLD 313
                 46677999***************************9975 PP

  == domain 2    score: 35.8 bits;  conditional E-value: 2e-11
   TIGR02324 150 fsGGekqRvniaraliadrPiLLLdePtasLdaanrkvvvelikeakargaaligifhd 208
                  sGG k+Rvni + l++   +L LdePt+ Ld a   +    ++ ++++g+++i ++h+
  MMETSP1137-20121227|5556_1 405 ISGGQKKRVNIGMELVTMPSVLFLDEPTSGLDGAATIALARCLAMLRRSGITIICVIHQ 463
                 69***************777999***********9999********************7 PP

>> TIGR02142  modC_ABC: molybdate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.0   0.3   1.4e-17   8.3e-16      14     208 ..     282     481 ..     269     493 .. 0.76

  Alignments for each domain:
  == domain 1    score: 56.0 bits;  conditional E-value: 1.4e-17
   TIGR02142  14 LdvdlelpgkgvtalFGrsGsGktslirliaGLt..rpdegeivldgevlqdsrkkiilppekRrvgyvFqeArLFpHlsvrenLrYGlk.raraeerris....eekvielLgiehLleRlpgk.....LsGGekqRvaigRAlLssPeLLlmDePLaaLDekrkkeilPyLerlsaelkiPilyvsHsld.evarladrvvvledG 208
                  dv+ + p   ++al G+sGsGkt+l++ +   +     eg + ++g v   +             g+v q+  +   l+v +nL Y    r  a++ +++     ++v+++L++e++ +  +g+     +sGG k+Rv ig  l++ P +L +DeP + LD      +   L  l+++  i i+ v H+    v +l  ++++l +G
  MMETSP1137-20121227|5556_1 282 RDVSAHFPNGSMVALMGASGSGKTTLMNTLLDRVpyGIPEGIVRVNGVVDGLA-------KAANLTGFVPQDDIVHHNLTVFQNLYYHAMlRLPADKPHAEklhlVQQVVHVLSLEKVQNVVVGNeenrgISGGQKKRVNIGMELVTMPSVLFLDEPTSGLDGAATIALARCLAMLRRS-GITIICVIHQPRfAVFQLFTHLLLLGEG 481
                 47889999999*****************9855431135788999999874333.......3345679*****999999*******997551333333222211126899******9876544432222239**********************************99999999998875.8999999999874688899999988776 PP

>> TIGR01187  potA: polyamine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.8   0.2   5.5e-17   3.3e-15       1     163 [.     296     466 ..     296     479 .. 0.77

  Alignments for each domain:
  == domain 1    score: 53.8 bits;  conditional E-value: 5.5e-17
   TIGR01187   1 lLGpsGsGkttlLrllaGlee..ldsGkilldgedvtevpaekrsvnvvfqsyaLfPhmtveenvafg..Lkm.rkvpkaeikervkeaLelvqlee.....fakrkpsqlsGGqrqrvalaravvkkPkiLLlDeplsaLDkkLrdqmqlelkalqeklGitvvlvthDqee 163
                 l+G+sGsGkttl+ +l       + +G + ++g+ v   +      + v q+  +   +tv++n+ +   L++    p+ae  + v++++++  le+     +++ +   +sGGq++rv +   +v  P +L+lDep s LD      +   l +  ++ Git++ v h  + 
  MMETSP1137-20121227|5556_1 296 LMGASGSGKTTLMNTLLDRVPygIPEGIVRVNGV-VDGLAKAANLTGFVPQDDIVHHNLTVFQNLYYHamLRLpADKPHAEKLHLVQQVVHVLSLEKvqnvvVGNEENRGISGGQKKRVNIGMELVTMPSVLFLDEPTSGLDGAATIALARCLAM-LRRSGITIICVIHQPRF 466
                 79***********999543321144566666654.5666666777899******************97335542356777776666666555555541112258899999**********************************99999888865.5678*********8665 PP

>> TIGR01846  type_I_sec_HlyB: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.7   0.1   8.1e-17   4.9e-15     455     664 ..     263     478 ..     248     492 .. 0.81

  Alignments for each domain:
  == domain 1    score: 52.7 bits;  conditional E-value: 8.1e-17
   TIGR01846 455 aiefenirfrykedspevlsnlsldikaGeviGivGpsGsGkstlt.kllqrl.yvPekGrvlvdgvdlaladPawlrrqvgvvlqenvlf.srsirdnialakP.aiseekviaaaklaGahdf..iselkqGyetevg.ekGaalsGGqrqrialaralvanPrilildeatsaldyeseavimrnlreick.grtviiiah..rlstvraadrilvl 664
                 ++e++++ ++ k  +  vl+++s + ++G ++ ++G sGsGk+tl   ll r+ y   +G v v+gv  +la  a l    g v q++++  + ++ +n+       ++ +   +a kl   ++   + +l++  +  vg e+   +sGGq++r+ +   lv+ P +l lde ts ld  +  ++ r l  + + g t+i++ h  r++  +   ++l+l
  MMETSP1137-20121227|5556_1 263 TLELQQVGLKLKATKKYVLRDVSAHFPNGSMVALMGASGSGKTTLMnTLLDRVpYGIPEGIVRVNGVVDGLAKAANL---TGFVPQDDIVHhNLTVFQNLYYHAMlRLPAD-KPHAEKLHLVQQVvhVLSLEKVQNVVVGnEENRGISGGQKKRVNIGMELVTMPSVLFLDEPTSGLDGAATIALARCLAMLRRsGITIICVIHqpRFAVFQLFTHLLLL 478
                 578999**************************************962699998555567*******99999999998...5899999988625689999976554144444.4567777666665115677788888886477889*******************************************99987478*****994455555555555555 PP

>> TIGR03740  galliderm_ABC: lantibiotic protection ABC transporter, ATP-binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.4   0.1   9.8e-17   5.9e-15       7     182 ..     272     462 ..     264     493 .. 0.78

  Alignments for each domain:
  == domain 1    score: 53.4 bits;  conditional E-value: 9.8e-17
   TIGR03740   7 skkfkkqavvnnvslkvkknsvygllGpnGaGkstllklltGllrk..tsGeilldgrewtrkdlkki.GsliesPalyenltarenlkvrtlllglpesr.......ieevlkivdlentek.....kkakqfslGmkqrlGiaiallnkPkllildePtnGldPlGiqelreliksfpekGitvilssh 182
                 + k  k+ v+ +vs + ++ s+ +l+G  G+Gk+tl+  l   +     +G + ++g      +  ++ G + ++  +++nlt  +nl  +++l+   ++        +++v++++ le+ +       + +  s G k+r+ i + l+  P +l ldePt Gld      l + +  +++ Git+i   h
  MMETSP1137-20121227|5556_1 272 KLKATKKYVLRDVSAHFPNGSMVALMGASGSGKTTLMNTLLDRVPYgiPEGIVRVNGVVDGLAKAANLtGFVPQDDIVHHNLTVFQNLYYHAMLRLPADKPhaeklhlVQQVVHVLSLEKVQNvvvgnEENRGISGGQKKRVNIGMELVTMPSVLFLDEPTSGLDGAATIALARCLAMLRRSGITIICVIH 462
                 45567899******************************999887651257889999987776666666155556778899*********999875322211111222367777777787765411111566679*****************************************************8777 PP

>> TIGR03411  urea_trans_UrtD: urea ABC transporter, ATP-binding protein UrtD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.7   0.1   1.6e-16   9.5e-15      16     217 ..     279     480 ..     262     495 .. 0.72

  Alignments for each domain:
  == domain 1    score: 52.7 bits;  conditional E-value: 1.6e-16
   TIGR03411  16 kalndlslsveegelrviiGpnGaGkttllDvitGktrpd..eGsvlfkgkdltklkeaeiarlGigRkfqkpsvfeeltvlenlelalkadksvlallfarlskeekerieevleligLeekadkkagl.....LshGqkqwLeigmllvqepkllllDePvaGmtdeetektaellkelake.rsvvvvehDmef.vrelaekvtvlhe 217
                   l+d+s +  +g++ +++G+ G+Gkttl++ +  ++     eG v ++g   +    +  a    g   q   v+++ltv++nl         +l+l + + ++e+ + +++v+++++Le+ ++   g+     +s Gqk++++igm lv  p++l+lDeP++G+  + t   a+ l  l+++  +++ v h   f v +l +++  l e
  MMETSP1137-20121227|5556_1 279 YVLRDVSAHFPNGSMVALMGASGSGKTTLMNTLLDRVPYGipEGIVRVNGV--VDGLAK--AANLTGFVPQDDIVHHNLTVFQNLYYH-----AMLRLPADKPHAEKLHLVQQVVHVLSLEKVQNVVVGNeenrgISGGQKKRVNIGMELVTMPSVLFLDEPTSGLDGAATIALARCLAMLRRSgITIICVIHQPRFaVFQLFTHLLLLGE 480
                 36899999****************************976522566666654..333322..3333466779*************9643.....33444445555666666666666666666665544433333399********************************************876268899999888845566666655555 PP

>> TIGR02769  nickel_nikE: nickel import ATP-binding protein NikE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.1   0.0   7.6e-08   4.6e-06       8      58 ..     262     312 ..     257     328 .. 0.90
   2 !   26.6   0.1   1.4e-08   8.3e-07     145     227 ..     399     481 ..     363     491 .. 0.77

  Alignments for each domain:
  == domain 1    score: 24.1 bits;  conditional E-value: 7.6e-08
   TIGR02769   8 vshtyrtggllgkkqrkavldnvslsleeGetvallGrsGaGkstlarlll 58 
                 ++ + ++ gl  k ++k vl +vs +  +G  val+G sG+Gk+tl   ll
  MMETSP1137-20121227|5556_1 262 ITLELQQVGLKLKATKKYVLRDVSAHFPNGSMVALMGASGSGKTTLMNTLL 312
                 5566788899999*********************************98776 PP

  == domain 2    score: 26.6 bits;  conditional E-value: 1.4e-08
   TIGR02769 145 dklPrqlsGGqlqriniaralavePklivldeavsnldlvlqasilellkklkqefGlaylfithdlr.lvqkfaqrvlvldeG 227
                 +   r +sGGq +r+ni   l   P ++ lde  s ld    +++ + l  l+ ++G++++ + h  r +v ++  ++l+l eG
  MMETSP1137-20121227|5556_1 399 NEENRGISGGQKKRVNIGMELVTMPSVLFLDEPTSGLDGAATIALARCLAMLR-RSGITIICVIHQPRfAVFQLFTHLLLLGEG 481
                 4456789********************************99999999998887.689******999873355666666666554 PP

>> TIGR01193  bacteriocin_ABC: ABC-type bacteriocin transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.1   0.0   5.7e-16   3.4e-14     473     683 ..     263     480 ..     243     495 .. 0.74

  Alignments for each domain:
  == domain 1    score: 50.1 bits;  conditional E-value: 5.7e-16
   TIGR01193 473 dievndvsysyGyg.sevledislkikknekitlvGlsGsGkstlakllvkf..fqaesGeillngkslkdidkhelrqlinylPqePfifsG.silenlllgakenvsqeeik.kaveiaeikddieklplGyqtel.seeassisgGqkqrlalarallsdskvlildestsnldlltekkivenllklk..dktiifvah..rlsvakksdkiivlde 683
                  +e+++v  +   + + vl d+s +  + + ++l+G sGsGk+tl+  l++   +   +G + +ng+ ++ + k +  +l  ++Pq+ ++ +  ++++nl   a  ++  ++ + + +++++    +  l++  +  +  ee+  isgGqk+r+ +   l++   vl lde ts ld      +   l  l+    tii v h  r+ v +   +++ l e
  MMETSP1137-20121227|5556_1 263 TLELQQVGLKLKATkKYVLRDVSAHFPNGSMVALMGASGSGKTTLMNTLLDRvpYGIPEGIVRVNGV-VDGLAKAA--NLTGFVPQDDIVHHNlTVFQNLYYHAMLRLPADKPHaEKLHLVQQVVHVLSLEKVQNVVVgNEENRGISGGQKKRVNIGMELVTMPSVLFLDEPTSGLDGAATIALARCLAMLRrsGITIICVIHqpRFAVFQLFTHLLLLGE 480
                 566667766665441569****************************9888753478999*****997.67887764..67789****99975449*****999988877776431344444444444444444444442467899********************************87777666666665511569999999555666666666665555 PP

>> TIGR01184  ntrCD: nitrate ABC transporter, ATP-binding proteins C and D
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.4   0.0   1.5e-15   9.1e-14       2     180 ..     282     469 ..     281     492 .. 0.80

  Alignments for each domain:
  == domain 1    score: 49.4 bits;  conditional E-value: 1.5e-15
   TIGR01184   2 kdvdleikkgefislighsgcgkstllnliag.lek.ptsgavilegk..eitepgpdrmvvfqnysllpwltvrenial.avdavlrdlskserreiveehielvglreaad.....krpeqlsggmkqrvaiaralsirpklllldepfgaldaltreelqekllkiveearvtvlmvthdvdeall 180
                 +dv+ +  +g +++l+g sg gk+tl+n +   +     +g v+++g    + +       v q+  +   ltv +n++  a+ +  +d++++e+ ++v++ +++++l++ ++      +   +sgg k+rv i   l + p +l+ldep   ld  +   l  + l +++ + +t++ v h+   a++
  MMETSP1137-20121227|5556_1 282 RDVSAHFPNGSMVALMGASGSGKTTLMNTLLDrVPYgIPEGIVRVNGVvdGLAKAANLTGFVPQDDIVHHNLTVFQNLYYhAMLRLPADKPHAEKLHLVQQVVHVLSLEKVQNvvvgnEENRGISGGQKKRVNIGMELVTMPSVLFLDEPTSGLDGAATIALA-RCLAMLRRSGITIICVIHQPRFAVF 469
                 688888999*******************7643133213479999999621456666666678899999999******97538889999********************998862222145667********************************99999986.677889999*********9877776 PP

>> TIGR01288  nodI: nodulation ABC transporter NodI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.3   0.1   2.4e-15   1.4e-13       8     196 ..     269     465 ..     261     494 .. 0.77

  Alignments for each domain:
  == domain 1    score: 48.3 bits;  conditional E-value: 2.4e-15
   TIGR01288   8 vgvsksygdkvvvndlsftiaagecfgllgpngagkstiarlvlglispdegk.itvlgepvpararlarakigvvpqfdnldreftvrenllvfgryfglstre..ie..evipsllefarleskadvrvad.....lsggmkrrltlaralindpqllildepttgldpharhliwerlrsllargktilltthlme 196
                 vg++    +k v+ d+s    +g    l+g  g+gk+t+   +l  ++    + i  ++  v + a++a    g vpq d +++++tv +nl  +   ++l + +   e  + + ++++   le   +v v +     +sgg k+r+ + + l+  p +l ldept+gld  a   +   l  l   g ti+   h   
  MMETSP1137-20121227|5556_1 269 VGLKLKATKKYVLRDVSAHFPNGSMVALMGASGSGKTTLMNTLLDRVPYGIPEgIVRVNGVVDGLAKAA-NLTGFVPQDDIVHHNLTVFQNLY-YHAMLRLPADKphAEklHLVQQVVHVLSLEKVQNVVVGNeenrgISGGQKKRVNIGMELVTMPSVLFLDEPTSGLDGAATIALARCLAMLRRSGITIICVIHQPR 465
                 44555667899**********************************999765441333455666777766.568******************86.566777765431123114688889999999999999875444459********************************999888888888888899*999988654 PP

>> TIGR03522  GldA_ABC_ATP: gliding motility-associated ABC transporter ATP-binding subunit GldA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.7   0.1   5.2e-15   3.1e-13      11     183 ..     274     454 ..     264     466 .. 0.73

  Alignments for each domain:
  == domain 1    score: 47.7 bits;  conditional E-value: 5.2e-15
   TIGR03522  11 lygkqkaldevsfeaekGeivGflGPnGaGkstlmkiltgylkad..sGsvavagedvlknslevrkniGylPehnPlyldlyvreylefsaalyklkgrklkkr...veelielvGlkaeqhkkiga.....lskGyrqrvGlakallhdPkvlildePttGldPnqlveirevikeiakdk 183
                 + +k+++l +vs +  +G++v ++G  G+Gk+tlm  l   ++     G v v+   v++   ++ +  G++P+ + ++ +l v + l ++a l    ++   ++   v+++++   l++ q   +g+     +s G ++rv +   l+  P+vl ldePt+Gld    +++ + ++++ +  
  MMETSP1137-20121227|5556_1 274 KATKKYVLRDVSAHFPNGSMVALMGASGSGKTTLMNTLLDRVPYGipEGIVRVN--GVVDGLAKAANLTGFVPQDDIVHHNLTVFQNLYYHAMLRLPADKPHAEKlhlVQQVVHVLSLEKVQNVVVGNeenrgISGGQKKRVNIGMELVTMPSVLFLDEPTSGLDGAATIALARCLAMLRRSG 454
                 567899*******************************99888765114556665..5888889999999***98766666666666666665554433333222211255666666666666555553333349********************************99999998888887654 PP

>> TIGR02770  nickel_nikD: nickel import ATP-binding protein NikD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.8   0.1   1.6e-14   9.8e-13       3     185 ..     282     463 ..     280     482 .. 0.81

  Alignments for each domain:
  == domain 1    score: 45.8 bits;  conditional E-value: 1.6e-14
   TIGR02770   3 qdvnlslkrgkvlalvGesGsGksltalailglldkeltktsGeilldgkelaalalrgreialilqnPrsafn..PlltikeqlletlkaleklskqakelivealeavgLeeaeevl..kkypfelsGGmlqRvmialallleaplliaDePttdlDvvvqaevLklleelrekrglgillithD 185
                 +dv+ +  +g ++al+G+sGsGk++   ++l+  + +    +G ++++g  +  la   + ++++ q+ +   n    +++  +++  l a  k++++  +l+ + ++  +Le++++v+  ++    +sGG  +Rv i + l++ +++l+ DePt+ lD ++ + + + l  lr ++g++i+ + h 
  MMETSP1137-20121227|5556_1 282 RDVSAHFPNGSMVALMGASGSGKTTLMNTLLDRVPYG--IPEGIVRVNGV-VDGLAKAANLTGFVPQDDIVHHNltVFQNLYYHAMLRLPAD-KPHAEKLHLVQQVVHVLSLEKVQNVVvgNEENRGISGGQKKRVNIGMELVTMPSVLFLDEPTSGLDGAATIALARCLAMLR-RSGITIICVIHQ 463
                 678888999*************************955..67899999996.7889999999*******987655114556666666666544.45555555788888889******99833456778**********************************9999888887665.678999999885 PP

>> TIGR00958  3a01208: antigen peptide transporter 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.6   0.2   4.4e-14   2.7e-12     493     689 ..     277     481 ..     265     491 .. 0.76

  Alignments for each domain:
  == domain 1    score: 43.6 bits;  conditional E-value: 4.4e-14
   TIGR00958 493 dkpvlkdLtftlepGevvalVGPsGsGKStvaa.llenl.YqPtgGqvllDgkplkeydhkylhrkvalVgqEPvl.fsgsvreNiaYGlt.ktedeevtaaakaanahd..Fiselekgydtevgek.GsqlsgGqkqriAiARALvrkPrvLiLDeAtSALDaeveqllqe...sksaksrtvlliah..rLstvekadkilvlkkg 689
                 +k vl+d +     G+ val G sGsGK t +  ll++  Y   +G v + g+         l    + V q+ ++ ++ +v +N+ Y    + + ++   a k   +++   +  lek  +  vg++    +sgGqk+r+ i   Lv  P vL LDe tS LD +   +l +   + ++++ t++ + h  r  + +   + l+l +g
  MMETSP1137-20121227|5556_1 277 KKYVLRDVSAHFPNGSMVALMGASGSGKTTLMNtLLDRVpYGIPEGIVRVNGVVDGLAKAANL---TGFVPQDDIVhHNLTVFQNLYYHAMlRLPADK-PHAEKLHLVQQvvHVLSLEKVQNVVVGNEeNRGISGGQKKRVNIGMELVTMPSVLFLDEPTSGLDGAATIALARclaMLRRSGITIICVIHqpRFAVFQLFTHLLLLGEG 481
                 688***************************986266665699999*****9985444444444...45667777661567999****97651444544.4445555555511456788999999996515679********************************88888877665567788999999983345666666666666665 PP

>> TIGR01257  rim_protein: rim ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.8   0.1   3.1e-14   1.9e-12     952    1119 ..     287     463 ..     267     479 .. 0.81

  Alignments for each domain:
  == domain 1    score: 42.8 bits;  conditional E-value: 3.1e-14
   TIGR01257  952 tfyenqitaflghngagktttlsiltgllpptsgtvlvggkdietnldavrqslgmcpqhnilfhhltvaehilfyaqlk...grsweea.....qlemeamledtglhhkrneeaqdlsgglqrklsvaiafvgdakvvvldeptsgvdpysrrsiwdll.lkyrsgrtiimsthh 1119
                   f +  + a++g  g+gktt +  l   +p      +v  + +   l    +  g++pq +i+ h ltv + + ++a l+    + + e      q+     le        nee + +sgg ++++ + + +v    v+ ldeptsg+d  +  ++   l +  rsg tii   h+
  MMETSP1137-20121227|5556_1  287 HFPNGSMVALMGASGSGKTTLMNTLLDRVPYGIPEGIVRVNGVVDGLAKAANLTGFVPQDDIVHHNLTVFQNLYYHAMLRlpaDKPHAEKlhlvqQVVHVLSLEKVQNVVVGNEENRGISGGQKKRVNIGMELVTMPSVLFLDEPTSGLDGAATIALARCLaMLRRSGITIICVIHQ 463 
                  56677899*********************9987777777777888999999999***********************997332233333211111222223466666677789**************************************999998765526679******98885 PP

>> TIGR01277  thiQ: thiamine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.8   0.2   7.7e-14   4.7e-12      21     192 ..     288     467 ..     264     486 .. 0.74

  Alignments for each domain:
  == domain 1    score: 43.8 bits;  conditional E-value: 7.7e-14
   TIGR01277  21 veaGervailGesGaGkstllnliaGfl.ep.asGeikvndkdhtrsapyerpvsmlfqennlfahltvrqni...glGlkpglklnavqkekvedvarqvGiadylerlpee.....lsGGqrqrvalarclvrekpillldepfsaldpklreemlalvkkladekkltlllvthslsda 192
                   +G  va++G sG+Gk+tl+n +   +     +G ++vn++ + ++a        + q++ +   ltv qn+   ++   p+ k  a++ + v++v + + +++  + + ++     +sGGq++rv +   lv    +l+ldep s ld +     la    +  +  +t++ v h++  a
  MMETSP1137-20121227|5556_1 288 FPNGSMVALMGASGSGKTTLMNTLLDRVpYGiPEGIVRVNGV-VDGLAKAANLTGFVPQDDIVHHNLTVFQNLyyhAMLRLPADKPHAEKLHLVQQVVHVLSLEKVQNVVVGNeenrgISGGQKKRVNIGMELVTMPSVLFLDEPTSGLDGAATIA-LARCLAMLRRSGITIICVIHQPRFA 467
                 5689*****************9776543122137999**997.557777788889999***9**********93322333477777777777788888888887776655432223449*******************************987654.4444455567789999999998754 PP

>> TIGR03719  ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   1.6e-05   0.00098     328     370 ..     271     313 ..     224     359 .. 0.77
   2 !   25.9   0.0   1.2e-08   7.3e-07     160     241 ..     403     488 ..     378     500 .. 0.75

  Alignments for each domain:
  == domain 1    score: 15.6 bits;  conditional E-value: 1.6e-05
   TIGR03719 328 lskafgdklliddlsfklpkggivGviGpnGaGkstlfklitg 370
                 l+ +  +k ++ d+s + p+g++v ++G+ G+Gk+tl++ + +
  MMETSP1137-20121227|5556_1 271 LKLKATKKYVLRDVSAHFPNGSMVALMGASGSGKTTLMNTLLD 313
                 3334456677788888888888888888888888888876654 PP

  == domain 2    score: 25.9 bits;  conditional E-value: 1.2e-08
   TIGR03719 160 eklsGGekrrvalcrlllekPdlllldePtnhldaesvaWlekflkeyk..G.tvvavthd.ryfldnvaeWileldrGegipykg 241
                   +sGG+k+rv +   l++ P +l+ldePt  ld  +   l + l+  +  G t+++v h  r+ + +    +l l  G g  y g
  MMETSP1137-20121227|5556_1 403 RGISGGQKKRVNIGMELVTMPSVLFLDEPTSGLDGAATIALARCLAMLRrsGiTIICVIHQpRFAVFQLFTHLLLLGEGGGQIYSG 488
                 56899999999999999999999999999999998888888887665431133788888864665666777777777776666665 PP

>> TIGR02633  xylG: D-xylose ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.0   3.6e-05    0.0022      16     109 ..     280     369 ..     264     401 .. 0.68
   2 !   26.9   0.1   5.5e-09   3.3e-07     403     479 ..     404     481 ..     373     487 .. 0.83

  Alignments for each domain:
  == domain 1    score: 14.4 bits;  conditional E-value: 3.6e-05
   TIGR02633  16 aldnidlklraGeivslcGenGaGkstlmkvlsgvyphGtydGeilfegeelkassirdterkGiviihqeltlvkelsvleniflGneitlkG 109
                  l +++ +   G +v+l G  G+Gk+tlm  l    p+G  +G +  +g   +    + ++  G   + q+ ++ ++l+v +n++    + l+ 
  MMETSP1137-20121227|5556_1 280 VLRDVSAHFPNGSMVALMGASGSGKTTLMNTLLDRVPYGIPEGIVRVNGV--VDGLAKAANLTGF--VPQDDIVHHNLTVFQNLYYHAMLRLPA 369
                 57889999999*****************************9998888774..2223333334443..456666666666666666666666666 PP

  == domain 2    score: 26.9 bits;  conditional E-value: 5.5e-09
   TIGR02633 403 rlsGGnqqkavlakllllnprvlildeptrGvdvGakyeiyklinqlaqeGvaiivvs.selaevlGlsdrvlvigeG 479
                 ++sGG++++  +   l++ p vl ldept G+d  a   + + +++l + G++ii v       v+ l   +l++geG
  MMETSP1137-20121227|5556_1 404 GISGGQKKRVNIGMELVTMPSVLFLDEPTSGLDGAATIALARCLAMLRRSGITIICVIhQPRFAVFQLFTHLLLLGEG 481
                 589999999999999**************************************9966404455666777777766666 PP

>> TIGR03005  ectoine_ehuA: ectoine/hydroxyectoine ABC transporter, ATP-binding protein EhuA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.1   0.2   1.7e-12     1e-10      14     210 ..     279     467 ..     266     482 .. 0.75

  Alignments for each domain:
  == domain 1    score: 39.1 bits;  conditional E-value: 1.7e-12
   TIGR03005  14 tvldglelevaaGekvaliGpsGsGkstilrilmtl..etideGsikvegeqlyhmkg.rkGklvpadekhlrkvrekiGmvfqsfnlfphktvldnvteapv.lvkGvaraeaekravelldmvGladkadalpaqlsGGqkqrvaiaralalrpkvllfdevtsaldpelveevlnvlrrlasetdltmllvthemgfa 210
                  vl +++ +  +G  val+G sGsGk+t++  l+     +i eG ++v+g      k+ +   +vp d+       ++   vfq  nl+ h   l+  +  p    + + +   +  ++e ++ v +++  +     +sGGqk+rv i   l   p vl++de+ts ld      +   l        +t++ v h+ +fa
  MMETSP1137-20121227|5556_1 279 YVLRDVSAHFPNGSMVALMGASGSGKTTLMNTLLDRvpYGIPEGIVRVNGVVDGLAKAaNLTGFVPQDDIV-----HHNLTVFQ--NLYYHAM-LRLPADKPHaEKLHLVQQVVHVLSLEKVQNVVVGNEEN---RGISGGQKKRVNIGMELVTMPSVLFLDEPTSGLDGAATIALARCLAM-LRRSGITIICVIHQPRFA 467
                 58899999999********************99975225799******98654444430334567777643.....34446888..7887754.55555555414455666666666777777777776655...579*******************************9876655555544.456789*********998 PP

>> TIGR02323  CP_lyasePhnK: phosphonate C-P lyase system protein PhnK
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.2   0.0   0.00034      0.02      21      51 ..     284     315 ..     265     326 .. 0.79
   2 !   27.8   0.3     6e-09   3.6e-07     137     220 ..     400     488 ..     375     494 .. 0.78

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 0.00034
   TIGR02323  21 vsflyp.GevlgivGesGsGkstllkalaarl 51 
                 vs  +p G +++++G sGsGk+tl+++l  r+
  MMETSP1137-20121227|5556_1 284 VSAHFPnGSMVALMGASGSGKTTLMNTLLDRV 315
                 6664554999*****************98876 PP

  == domain 2    score: 27.8 bits;  conditional E-value: 6e-09
   TIGR02323 137 ikpaafsGGmqqrlqiarnlvtrprlvfm.eptGGlvsvqarllllr..glvrelglaviivth...lavarllaqrllvmkqGrvvesG 220
                  + + +sGG ++r++i  +lvt p ++f+ ept Gl    a + l r  +++r  g+++i v h   +av +l+++ ll+ + G  + sG
  MMETSP1137-20121227|5556_1 400 EENRGISGGQKKRVNIGMELVTMPSVLFLdEPTSGLDGA-ATIALARclAMLRRSGITIICVIHqprFAVFQLFTHLLLLGEGGGQIYSG 488
                 477889******************************543.4455555114578899******9988899*****9988887776666655 PP

>> TIGR01192  chvA: glucan exporter ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.9   0.1     3e-12   1.8e-10     325     526 ..     254     459 ..     188     468 .. 0.69

  Alignments for each domain:
  == domain 1    score: 37.9 bits;  conditional E-value: 3e-12
   TIGR01192 325 arelknvkgavefrdisfefanssqgv.rdvsfeakagqtvaivgptgagkttlin.llqrv.ydpksgqilidgvdiatvtreslrksiatvfqda.gllnrsirenirlgredatdeevvea..akaaaasdfiekrlkgydtlvgergnr.lsggerqrlaiarailknapilvldeatsaldvetearvkdaidalrknrttfii 526
                 ++  + +  ++e++++  ++  +++ v rdvs +   g  va++g +g+gkttl+n ll+rv y   +g + ++gv ++ +++ +       v qd     n ++ +n+         ++  +a   +       + +  k  + +vg+  nr +sgg+++r+ i   ++    +l lde ts ld  + + +   +  lr+   t+i 
  MMETSP1137-20121227|5556_1 254 LKTAQIIPITLELQQVGLKLKATKKYVlRDVSAHFPNGSMVALMGASGSGKTTLMNtLLDRVpYGIPEGIVRVNGV-VDGLAKAANL--TGFVPQDDiVHHNLTVFQNLYYHAMLRLPADKPHAekLHLVQQVVHVLSLEKVQNVVVGNEENRgISGGQKKRVNIGMELVTMPSVLFLDEPTSGLDGAATIALARCLAMLRRSGITIIC 459
                 23333455689999999999999887648**************************97789*9889999****9998.4555554432..233445440445667777765544333333333330033333334455556666789998888769*********************************************999988874 PP

>> TIGR00630  uvra: excinuclease ABC subunit A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   0.0   9.8e-07   5.9e-05     612     656 ..     270     314 ..     254     329 .. 0.89
   2 !   17.3   0.2   3.9e-06   0.00023     826     909 ..     402     484 ..     373     490 .. 0.76

  Alignments for each domain:
  == domain 1    score: 19.2 bits;  conditional E-value: 9.8e-07
   TIGR00630 612 vltlkgakennlkdidvsiplglltvitGvsgsGkstLindiLvk 656
                  l+lk +k+  l+d++ ++p g ++++ G sgsGk tL+n +L +
  MMETSP1137-20121227|5556_1 270 GLKLKATKKYVLRDVSAHFPNGSMVALMGASGSGKTTLMNTLLDR 314
                 58999**********************************998865 PP

  == domain 2    score: 17.3 bits;  conditional E-value: 3.9e-06
   TIGR00630 826 attLsGGeaqrvkLakeLskrstgktlyilDePttGLhfdDikkLlevlqrlvdkGntvvviehn..ldviksaDyiidlGPeGGe 909
                    +sGG  +rv + +eL    t   +  lDePt GL  +    L + l  l  +G t++ + h   + v +   +++ lG  GG+
  MMETSP1137-20121227|5556_1 402 NRGISGGQKKRVNIGMELV---TMPSVLFLDEPTSGLDGAATIALARCLAMLRRSGITIICVIHQprFAVFQLFTHLLLLGEGGGQ 484
                 4568999999999999995...6778888999999999999999999999999999999988885336788888888888877775 PP

>> TIGR03269  met_CoM_red_A2: methyl coenzyme M reductase system, component A2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.9   0.0   0.00011    0.0064       9      47 ..     274     312 ..     264     327 .. 0.82
   2 !   21.9   0.0   1.9e-07   1.2e-05     166     245 ..     402     481 ..     367     508 .. 0.78

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 0.00011
   TIGR03269   9 kfdglevlknisleleeGevlGilGksGaGksvllhllr 47 
                 k   + vl+++s ++ +G ++ ++G sG+Gk+ l++ l 
  MMETSP1137-20121227|5556_1 274 KATKKYVLRDVSAHFPNGSMVALMGASGSGKTTLMNTLL 312
                 3456779****************************9885 PP

  == domain 2    score: 21.9 bits;  conditional E-value: 1.9e-07
   TIGR03269 166 ardlsGGekqrvvlarqlakeplllladeptGtldpktaklvhealkeavkeedislvltshwpev.iedlsdkaillekG 245
                  r +sGG+k+rv +  +l+  p +l+ dept  ld   a +      +  + ++i+++   h p+  + +l ++ +ll +G
  MMETSP1137-20121227|5556_1 402 NRGISGGQKKRVNIGMELVTMPSVLFLDEPTSGLDGA-ATIALARCLAMLRRSGITIICVIHQPRFaVFQLFTHLLLLGEG 481
                 689********************************86.55666666778999**********9985255666666666655 PP

>> TIGR01186  proV: glycine betaine/L-proline transport ATP binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.7   0.0   1.5e-10   8.8e-09       6     188 ..     278     462 ..     274     478 .. 0.76

  Alignments for each domain:
  == domain 1    score: 32.7 bits;  conditional E-value: 1.5e-10
   TIGR01186   6 klgvndvdleieeGeiiviiGlsGsGkstlvr.llnrli.ePtaGkilidGediaeisdaelrevrrkkiamviqkialfPhmtildnislglellkideqerkekalealklv....dleeyed.....ryPdelsGGmqqrvGlaralaaePdlllmdeafsaldPlirdelqdelvklqkklqktivfith 188
                 k  ++dv+ +  +G ++ ++G sGsGk+tl+  ll+r+     +G + ++G+     + a+l        ++v q+  +    t+ +n+ +   l  +++++ +   l+++++v     le+ ++     +    +sGG+++rv +   l + P +l++de+ s ld      l   l  l++    ti+ + h
  MMETSP1137-20121227|5556_1 278 KYVLRDVSAHFPNGSMVALMGASGSGKTTLMNtLLDRVPyGIPEGIVRVNGVVDGLAKAANL-------TGFVPQDDIVHHNLTVFQNLYYHAMLR-LPADKPHAEKLHLVQQVvhvlSLEKVQNvvvgnEENRGISGGQKKRVNIGMELVTMPSVLFLDEPTSGLDGAATIALARCLAMLRR-SGITIICVIH 462
                 556789999999*****************996478888514468999999998777788888.......89999999999999******9987665.444444444444444332222566665411111445569*******************************9999999888887765.5678887777 PP

>> TIGR01194  cyc_pep_trnsptr: cyclic peptide transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.3   0.0   2.3e-09   1.4e-07     337     545 ..     264     481 ..     199     486 .. 0.81

  Alignments for each domain:
  == domain 1    score: 28.3 bits;  conditional E-value: 2.3e-09
   TIGR01194 337 lelkdvrysykdvessegfalGpidlriasGelvyivGenGcGkstliklllGl..yipqeGellldG....eavsdes.....rddyrdlfsavfadyylfddlvqpdekkqas.ldqattylsrleledkvkvedlnystttdlstGqrkrlalvnayleerpvllldewaadqdpafkrvfyeellpdlkrrGktilvishddry..feladrlikladG 545
                 lel++v ++ k+   ++ + l  +  +  +G +v ++G  G Gk+tl+  ll    y   eG + ++G     a +++      +dd  +   +vf + y    l  p +k +a  l+  ++ ++ l le+  +v  +n      +s Gq+kr+ +    +    vl lde ++  d a   +     l  l+r G ti+ + h+ r+  f+l  +l+ l +G
  MMETSP1137-20121227|5556_1 264 LELQQVGLKLKA---TKKYVLRDVSAHFPNGSMVALMGASGSGKTTLMNTLLDRvpYGIPEGIVRVNGvvdgLAKAANLtgfvpQDDIVHHNLTVFQNLYYHAMLRLPADKPHAEkLHLVQQVVHVLSLEKVQNVVVGNEE-NRGISGGQKKRVNIGMELVTMPSVLFLDEPTSGLDGAAT-IALARCLAMLRRSGITIICVIHQPRFavFQLFTHLLLLGEG 481
                 566666665554...56788999999999********************99974347666887766552211555555323333789999999*********999999999998527889999999**9987777777776.899**********9999999999************9975.66788999***************997668998888888776 PP

>> TIGR03415  ABC_choXWV_ATP: choline ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.1   0.0   0.00049     0.029      41      69 ..     282     310 ..     271     329 .. 0.86
   2 !   14.0   0.0   6.6e-05     0.004     137     224 ..     372     463 ..     353     493 .. 0.78

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 0.00049
   TIGR03415  41 adasldveeGeilvlmGlsGsGkssllra 69 
                 +d+s +  +G ++ lmG sGsGk++l+ +
  MMETSP1137-20121227|5556_1 282 RDVSAHFPNGSMVALMGASGSGKTTLMNT 310
                 678888999*****************976 PP

  == domain 2    score: 14.0 bits;  conditional E-value: 6.6e-05
   TIGR03415 137 akaerrkrveeqlelvglaeWadkkvge.....lsGGmqqrvGlarafateadillmdePfsaldPliraklqdellelqkklkktivfvshd 224
                 ++ae+ + v++ +++++l++ ++  vg+     +sGG ++rv +   + t   +l++deP s ld      l   l  + ++   ti+ v h 
  MMETSP1137-20121227|5556_1 372 PHAEKLHLVQQVVHVLSLEKVQNVVVGNeenrgISGGQKKRVNIGMELVTMPSVLFLDEPTSGLDGAATIALARCLA-MLRRSGITIICVIHQ 463
                 6778888888888888888888766542233449*******************************998888876554.445567788888876 PP

>> TIGR00957  MRP_assoc_pro: multi drug resistance-associated protein (MRP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.3   0.1   3.5e-08   2.1e-06     601     793 ..     229     437 ..     208     445 .. 0.71

  Alignments for each domain:
  == domain 1    score: 23.3 bits;  conditional E-value: 3.5e-08
   TIGR00957 601 vqasvslkrlriflsqeelepdsierrsikdgegnsitv..knatftwardepptlngltlsipegalvavvgqvgcgkssllsallaemd..kvegkvalkgsv......a....yvpqqawi.qndslrenilfgkaleekyykavleacalladleilps...gdrteig.ekgvnlsggqkqrvslaravysdadiyllddplsavda 793
                  qa++sl  l++ l++e+ + d  +r  +k+ +   it+  ++  +     +   l+ ++ + p+g++va++g  g gk++l+ +ll  +     eg v ++g v      a    +vpq+  +  n ++ +n+ +   l+ +  k   e   l+ ++  + s    ++  +g e    +sggqk+rv +   + +   + +ld+p s +d 
  MMETSP1137-20121227|5556_1 229 QQAALSLS-LKQQLAKED-DADDFDR-ELKTAQIIPITLelQQVGLKLKATKKYVLRDVSAHFPNGSMVALMGASGSGKTTLMNTLLDRVPygIPEGIVRVNGVVdglakaAnltgFVPQDDIVhHNLTVFQNLYYHAMLRLPADKPHAEKLHLVQQVVHVLSlekVQNVVVGnEENRGISGGQKKRVNIGMELVTMPSVLFLDEPTSGLDG 437
                 57777775.556666654.5566655.35555565565411556667777788899*******************************987521469999999887333332133337787766624677778888888887777777777777766654433400034445663566789****************************9996 PP

>> TIGR01271  CFTR_protein: cystic fibrosis transmembrane conductor regulator (CFTR)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.0   6.7e-07     4e-05    1219    1398 ..     265     449 ..     254     477 .. 0.72

  Alignments for each domain:
  == domain 1    score: 19.0 bits;  conditional E-value: 6.7e-07
   TIGR01271 1219 tvkdltakyteagravlqdlsfsveagqrvgllgrtgsgkstllsallrlls...tegeiqidgvswnsvtlqkwrkafgvipqkvfi.lsgtfrknldpyeqysdeeiwkvaeevgl.ksvieqfp.dkldfvlv..dggyvlsnghkqlmclarsilskakillldepsafldpvtlqiirktlkq 1398
                  +++++  k   + + vl+d+s    +g  v l+g +gsgk+tl+ +ll  +     eg ++++gv      l k     g +pq  ++    t  +nl  ++          ae++ l + v+  +  +k++ v+v  +    +s g k+ + +   +++   +l+ldep++ ld  +   + + l  
  MMETSP1137-20121227|5556_1  265 ELQQVGLKLKATKKYVLRDVSAHFPNGSMVALMGASGSGKTTLMNTLLDRVPygiPEGIVRVNGVVD---GLAKAANLTGFVPQDDIVhHNLTVFQNLYYHAMLRLPADKPHAEKLHLvQQVVHVLSlEKVQNVVVgnEENRGISGGQKKRVNIGMELVTMPSVLFLDEPTSGLDGAATIALARCLAM 449 
                  566777788888899********************************97664222699999999964...577888888999997555145678888877766544443444444444123333322245554444113455689******************************8776666666644 PP

>> TIGR02788  VirB11: P-type DNA transfer ATPase VirB11
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   3.5e-05    0.0021     143     180 ..     290     329 ..     227     371 .. 0.72

  Alignments for each domain:
  == domain 1    score: 15.0 bits;  conditional E-value: 3.5e-05
   TIGR02788 143 akkniiisGgtgsgKTTflkalvkliPke..eRlitiedt 180
                 ++  + ++G++gsgKTT++++l++ +P    e ++ ++ +
  MMETSP1137-20121227|5556_1 290 NGSMVALMGASGSGKTTLMNTLLDRVPYGipEGIVRVNGV 329
                 5667889********************6322666666655 PP

>> TIGR03348  VI_IcmF: type VI secretion protein IcmF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   0.0   6.5e-05    0.0039      32     129 ..     207     309 ..     193     310 .. 0.61

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 6.5e-05
   TIGR03348  32 larlliiavlllvwalwllirlwrakrkaqalleelaaeekekqdaaae....aeiaelearlkealallkksrlk.krrylyelP...WYlviGppGsGKTtllk 129
                   +l+++++ll+++ +   +r  ++     +l+++la+e+  ++d+  +    a+i  +  +l+++  +lk +++   r    ++P      ++G++GsGKTtl++
  MMETSP1137-20121227|5556_1 207 IFILVLVGLLLALYCCSS-ARSKQQAALSLSLKQQLAKED--DADDFDRelktAQIIPITLELQQVGLKLKATKKYvLRDVSAHFPngsMVALMGASGSGKTTLMN 309
                 233333333333333332.233333344445555555554..333332234447777799***********9997776666777773323578**********986 PP

>> TIGR03819  heli_sec_ATPase: helicase/secretion neighborhood ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.4   0.0   0.00023     0.014     181     204 ..     294     317 ..     262     331 .. 0.77

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 0.00023
   TIGR03819 181 llvsGgtGsGkttLLsalLalvae 204
                 + + G++GsGkttL+++lL +v++
  MMETSP1137-20121227|5556_1 294 VALMGASGSGKTTLMNTLLDRVPY 317
                 4568***************99975 PP

>> TIGR02322  phosphon_PhnN: phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.7   0.1   0.00027     0.016       1      24 [.     291     314 ..     291     325 .. 0.89

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 0.00027
   TIGR02322   1 grlilvvGpsGaGKDtlldlarar 24 
                 g +++++G+sG+GK tl++++ +r
  MMETSP1137-20121227|5556_1 291 GSMVALMGASGSGKTTLMNTLLDR 314
                 789***************987665 PP

>> TIGR02782  TrbB_P: P-type conjugative transfer ATPase TrbB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   0.00037     0.022     139     170 ..     294     324 ..     273     362 .. 0.75

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 0.00037
   TIGR02782 139 ilvvGGtgsGkttLanallaeiaksapddrvv 170
                 + ++G  gsGkttL+n ll+++    p + +v
  MMETSP1137-20121227|5556_1 294 VALMGASGSGKTTLMNTLLDRVPYGIP-EGIV 324
                 66799****************987644.4444 PP

>> TIGR00929  VirB4_CagE: type IV secretion/conjugal transfer ATPase, VirB4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00035     0.021     439     458 ..     293     312 ..     282     315 .. 0.87

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 0.00035
   TIGR00929 439 hTlIfGptgsGKTvllnfll 458
                 +++++G++gsGKT+l+n ll
  MMETSP1137-20121227|5556_1 293 MVALMGASGSGKTTLMNTLL 312
                 5789*************997 PP

>> TIGR00150  HI0065_YjeE: ATPase, YjeE family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   0.00058     0.035      15      45 ..     284     314 ..     271     320 .. 0.81

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 0.00058
   TIGR00150  15 lakaldlatvvlLkGdlGaGKttlvkgllkg 45 
                 +  + + + +v L G  G+GKttl+ +ll  
  MMETSP1137-20121227|5556_1 284 VSAHFPNGSMVALMGASGSGKTTLMNTLLDR 314
                 455678899****************999865 PP

>> TIGR00073  hypB: hydrogenase accessory protein HypB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00077     0.047      32      55 ..     293     316 ..     269     337 .. 0.84

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 0.00077
   TIGR00073  32 vlnllssiGsGktlllekliealk 55 
                 ++ l+++ GsGkt+l++ l++++ 
  MMETSP1137-20121227|5556_1 293 MVALMGASGSGKTTLMNTLLDRVP 316
                 5789***************99875 PP

>> TIGR00954  3a01203: peroxysomal long chain fatty acyl transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.0   0.00098     0.059     468     656 ..     280     482 ..     262     486 .. 0.65

  Alignments for each domain:
  == domain 1    score: 9.6 bits;  conditional E-value: 0.00098
   TIGR00954 468 lieeLsfevksGnhlLiiGPnGcGKsslfRilgelWPvyg...........glltkpeegklFyvPqrPYmslg.tlRdqiiYPdssedfkerglsdk.dLe.qiLeevkLedllereggwdavqdWkdvLsgGekqRiamARlfyHkPkfavLDEctsAvsvdvE...dklyelakevgitllsvshrk..sLwkyHeylLkldgkG 656
                 ++ ++s + ++G+ + ++G  G GK  l+ +l +  P                l   + +   +vPq   + +  t+ + + Y        ++   +k +L+ q+++++ Le++ +  +g +     +  +sgG+k+R+++   +   P    LDE ts +         +   ++++ git++ v h++  ++++  ++lL l+  G
  MMETSP1137-20121227|5556_1 280 VLRDVSAHFPNGSMVALMGASGSGKTTLMNTLLDRVPYGIpegivrvngvvDGL-AKAANLTGFVPQDDIVHHNlTVFQNLYYHAMLRLPADKPHAEKlHLVqQVVHVLSLEKVQNVVVGNE----ENRGISGGQKKRVNIGMELVTMPSVLFLDEPTSGLDGAATialARCLAMLRRSGITIICVIHQPrfAVFQLFTHLLLLGEGG 482
                 556677777888888888888888888888887777743366666666332112.2233334578888888877677766666655555555544443123213334444444444444433....34469****************************76433330115667899************87224566678888776444 PP

>> TIGR03167  tRNA_sel_U_synt: tRNA 2-selenouridine synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00076     0.046     110     147 ..     274     311 ..     257     316 .. 0.89

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 0.00076
   TIGR03167 110 KayRrlvldeleelaqelklvvlgGnTGsgKtelLekl 147
                 Ka +++vl++++    + ++v+l G+ GsgKt+l+++l
  MMETSP1137-20121227|5556_1 274 KATKKYVLRDVSAHFPNGSMVALMGASGSGKTTLMNTL 311
                 8999*********99999****************9987 PP

>> TIGR00231  small_GTP: small GTP-binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.0     0.002      0.12       6      25 ..     294     313 ..     290     318 .. 0.90

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 0.002
   TIGR00231   6 ivivGhvdvGKstLlnsllk 25 
                 ++++G +++GK+tL+n ll+
  MMETSP1137-20121227|5556_1 294 VALMGASGSGKTTLMNTLLD 313
                 899**************997 PP

>> TIGR00235  udk: uridine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.0    0.0021      0.12       6      30 ..     291     315 ..     286     323 .. 0.87

  Alignments for each domain:
  == domain 1    score: 9.8 bits;  conditional E-value: 0.0021
   TIGR00235   6 tiiigiaGasgsGkttvaekivell 30 
                 + ++++ GasgsGktt+++++ + +
  MMETSP1137-20121227|5556_1 291 GSMVALMGASGSGKTTLMNTLLDRV 315
                 5689**************9998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (915 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       299  (0.0728913); expected 82.0 (0.02)
Passed bias filter:                      212  (0.0516821); expected 82.0 (0.02)
Passed Vit filter:                       115  (0.0280351); expected 4.1 (0.001)
Passed Fwd filter:                        68  (0.0165773); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              68  [number of targets reported over threshold]
# CPU time: 1.80u 0.21s 00:00:02.01 Elapsed: 00:00:01.90
# Mc/sec: 635.63
//
Query:       MMETSP1137-20121227|5557_1  [L=195]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.011   13.6   0.0      0.017   13.0   0.0    1.2  1  TIGR01259 comE: comEA protein


Domain annotation for each model (and alignments):
>> TIGR01259  comE: comEA protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   4.1e-06     0.017      53     103 ..     112     158 ..      97     165 .. 0.85

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 4.1e-06
   TIGR01259  53 eagkealvnlnkAsleeLqalkGiGpakAkaiieyReenGaFksvddltkv 103
                 + +   ++ +n+A   + ++l+G+ p  A  i+     nG ++svddl k 
  MMETSP1137-20121227|5557_1 112 QVAPAGKIDINNALVTDYKQLSGMYPHAAGLIA----SNGPYNSVDDLFKL 158
                 555567899*****************9999886....6**********986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (195 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        89  (0.0216967); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.19u 0.13s 00:00:00.32 Elapsed: 00:00:00.45
# Mc/sec: 571.95
//
Query:       MMETSP1137-20121227|5558_1  [L=412]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   3.2e-115  383.2   0.7   3.8e-115  382.9   0.5    1.0  1  TIGR01064 pyruv_kin: pyruvate kinase


Domain annotation for each model (and alignments):
>> TIGR01064  pyruv_kin: pyruvate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  382.9   0.5  9.2e-119  3.8e-115       1     339 [.      58     406 ..      58     411 .. 0.94

  Alignments for each domain:
  == domain 1    score: 382.9 bits;  conditional E-value: 9.2e-119
   TIGR01064   1 rrtkIvaTiGPateskevlkklldaGvnvvRlNfSHgsheehkkvienvrevaeklgkpvaillDtkGpeiRvgeikk.eevklkkgekvilttdek.keegseekvsvdyks....lvkdvkeGdkilvdDGkislkVveveedk.vivevknggelkskkgvnlpgaevslpalsekDkkdlkfgveqgvdlvaaSFvrkaedvkevrevleekg...akdvkiiaKiEnqegvknideIikasdgimvARGDLGveipaeevpllQkklikkcreagkpvitATqmLdSmiknprPTRAEvsDvanAvldGtdavMLSgEtakGkYPveaVkvmakiakeaekale 339
                 r+ kIvaT+GPa++s e++++l++aGvn+ RlN SH +  + +  +  +re a++ +++v il D++Gp+ R +++ + e+v l+ ge+v l  +   +  ++  ++ ++  +    l++ +++G k+l+dDG +++kV++v++++  ++ev+ gg lks+kg+n+p+++++  al+ kD++d ++ +  gvd++a+SF +++ed++e+ +++++ +   +k+  ii KiE++ ++knideI+  sdg+mvARGDLGve+ +e  p++Qk li+k++ agk+vitATqm++Smi+ p+PTRAEvsDvanA++dGtdavMLSgE+a+G+ Pv +V++m k++ eae++ e
  MMETSP1137-20121227|5558_1  58 RNAKIVATLGPASSSREMISALIKAGVNIFRLNSSHRQKGQFEDLVPFIREEAKAAQREVLILGDIQGPKFRCTTTLNdEPVPLAVGEQVELGLSVDdDDLTRPGRICLSPTTeqtaLMRGLTVGMKLLLDDGNLEIKVLSVKSESeATCEVVIGGALKSRKGINVPELQIDCSALTVKDREDAEYLLGVGVDFIALSFAQRKEDIQELIDIMDKMNvaeEKRPMIIPKIEKPAALKNIDEILALSDGLMVARGDLGVELGLERTPFAQKFLIRKANAAGKFVITATQMMESMISAPVPTRAEVSDVANAIFDGTDAVMLSGESAMGADPVRTVQWMGKVIAEAEAHAE 406
                 678*********************************************************************98887779************9998866677788887654444567*************************99988**************************************************************9999987622256678************************************************************************************************************************9976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (412 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       164  (0.0399805); expected 82.0 (0.02)
Passed bias filter:                      128  (0.0312043); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.17s 00:00:00.51 Elapsed: 00:00:00.55
# Mc/sec: 988.72
//
Query:       MMETSP1137-20121227|5559_1  [L=157]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.2e-10   36.8   0.3    2.7e-09   35.1   0.2    1.7  2  TIGR00320 dfx_rbo: desulfoferrodoxin
    2.1e-08   32.3   1.5    3.7e-08   31.5   0.4    1.8  2  TIGR00332 neela_ferrous: desulfoferrodoxin ferrous iron-binding domain


Domain annotation for each model (and alignments):
>> TIGR00320  dfx_rbo: desulfoferrodoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0      0.17   3.4e+02      36      58 ..      27      49 ..      19      54 .. 0.78
   2 !   35.1   0.2   1.3e-12   2.7e-09      47     124 ..      65     145 ..      38     146 .. 0.82

  Alignments for each domain:
  == domain 1    score: -0.7 bits;  conditional E-value: 0.17
   TIGR00320 36 llkekttdaakekhvpviektgn 58
                ll+  t++  + k vp +e++++
  MMETSP1137-20121227|5559_1 27 LLTDTTAELQQGKVVPSLEEEKG 49
                66777788888899999988765 PP

  == domain 2    score: 35.1 bits;  conditional E-value: 1.3e-12
   TIGR00320  47 ekhvpviektgngvkvkvgsvahpmeekhyiewielia..ddvvyrkdlkpgdapeaeflv..kadkvvareycnihglwka 124
                   hvp +   ++  k+   +v+h m  +h i+++ + +  ++v++ kdl p d+p+ ++ +  +++ v+a  +cn hglwk+
  MMETSP1137-20121227|5559_1  65 SSHVPRVHLDAE-AKMAKIKVPHEMSAEHSINFVYVRDqnGKVIFSKDLLPEDEPNFKIKLsdETTAVTAYSHCNQHGLWKS 145
                 469999976555.45555589*************9986224689***********999888556777888899*******96 PP

>> TIGR00332  neela_ferrous: desulfoferrodoxin ferrous iron-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0      0.69   1.4e+03       2      23 ..      32      50 ..      31      54 .. 0.68
   2 !   31.5   0.4   1.8e-11   3.7e-08       8     105 ..      65     149 ..      61     151 .. 0.69

  Alignments for each domain:
  == domain 1    score: -2.5 bits;  conditional E-value: 0.69
   TIGR00332  2 ttDvkkekhvPvievkdregak 23
                t+++++ k vP +e   +e+++
  MMETSP1137-20121227|5559_1 32 TAELQQGKVVPSLE---EEKGV 50
                56677788888888...55544 PP

  == domain 2    score: 31.5 bits;  conditional E-value: 1.8e-11
   TIGR00332   8 ekhvPvievkdregakvevkvkvgkeiphPmeeehfieWielvagd..lvlkkelvvgdaekaeklsvdapsfkve...ksskltalsyCnihGlWeyekels 105
                   hvP +  +d+e    ++kv      ph m  eh i+++ + +++  ++  k+l ++d+          p+fk +   +++ +ta+s+Cn hGlW++ +e++
  MMETSP1137-20121227|5559_1  65 SSHVPRVH-LDAEAKMAKIKV------PHEMSAEHSINFVYVRDQNgkVIFSKDLLPEDE----------PNFKIKlsdETTAVTAYSHCNQHGLWKS-AEVT 149
                 57999999.888888887777......************988766511333344444333..........66665411156679999*********87.5665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (157 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       137  (0.0333983); expected 82.0 (0.02)
Passed bias filter:                      124  (0.0302292); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.19u 0.19s 00:00:00.38 Elapsed: 00:00:00.34
# Mc/sec: 609.48
//
Query:       MMETSP1137-20121227|5560_1  [L=414]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (414 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       137  (0.0333983); expected 82.0 (0.02)
Passed bias filter:                      106  (0.0258411); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.16s 00:00:00.47 Elapsed: 00:00:00.42
# Mc/sec: 1301.04
//
Query:       MMETSP1137-20121227|5561_1  [L=92]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (92 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        40  (0.00975134); expected 82.0 (0.02)
Passed bias filter:                       38  (0.00926377); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.14s 00:00:00.28 Elapsed: 00:00:00.28
# Mc/sec: 433.68
//
Query:       MMETSP1137-20121227|5562_1  [L=486]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (486 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       204  (0.0497318); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.14s 00:00:00.47 Elapsed: 00:00:00.47
# Mc/sec: 1364.82
//
Query:       MMETSP1137-20121227|5563_1  [L=149]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (149 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        65  (0.0158459); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.16s 00:00:00.33 Elapsed: 00:00:00.43
# Mc/sec: 457.36
//
Query:       MMETSP1137-20121227|5564_1  [L=775]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   6.8e-127  421.5   0.0   8.3e-127  421.2   0.0    1.1  1  TIGR01578 MiaB-like-B: MiaB-like tRNA modifying enzyme, archaeal-type
    5.1e-94  313.3   0.0    6.3e-94  313.0   0.0    1.1  1  TIGR00089 TIGR00089: radical SAM methylthiotransferase, MiaB/RimO family
    1.1e-63  213.7   0.0    1.4e-63  213.4   0.0    1.1  1  TIGR01579 MiaB-like-C: MiaB-like tRNA modifying enzyme
    1.4e-59  200.0   0.0    1.9e-59  199.6   0.0    1.1  1  TIGR01574 miaB-methiolase: tRNA-i(6)A37 thiotransferase enzyme MiaB
    5.5e-48  161.9   0.0    7.1e-48  161.5   0.0    1.1  1  TIGR01125 TIGR01125: ribosomal protein S12 methylthiotransferase RimO
    6.5e-17   59.2   0.0    1.7e-16   57.9   0.0    1.5  1  TIGR04013 B12_SAM_MJ_1487: B12-binding domain/radical SAM domain protein, MJ_1487 family
    2.3e-12   44.2   0.2    6.8e-09   32.8   0.1    2.8  2  TIGR04014 B12_SAM_MJ_0865: B12-binding domain/radical SAM domain protein, MJ_0865 family
    7.1e-05   19.3   0.0     0.0069   12.8   0.0    2.1  2  TIGR03904 SAM_YgiQ: uncharacterized radical SAM protein YgiQ
     0.0058   13.4   0.0      0.012   12.4   0.0    1.4  2  TIGR03471 HpnJ: hopanoid biosynthesis associated radical SAM protein HpnJ
  ------ inclusion threshold ------
      0.011   12.5   0.0      0.017   11.8   0.0    1.2  1  TIGR04107 rSAM_HutW: putative heme utilization radical SAM enzyme HutW
      0.014   12.4   0.0      0.025   11.5   0.0    1.3  1  TIGR03994 rSAM_HemZ: coproporphyrinogen dehydrogenase HemZ
      0.047   10.6   0.0      0.047   10.6   0.0    1.5  1  TIGR01212 TIGR01212: radical SAM protein, TIGR01212 family


Domain annotation for each model (and alignments):
>> TIGR01578  MiaB-like-B: MiaB-like tRNA modifying enzyme, archaeal-type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  421.2   0.0  2.4e-129  8.3e-127       1     420 [.     146     572 ..     146     573 .. 0.95

  Alignments for each domain:
  == domain 1    score: 421.2 bits;  conditional E-value: 2.4e-129
   TIGR01578   1 kvyvetyGCalnkadseiiknklkkaGyelve..kaeeAdlailntCtVkkktEdkllarikelarkgkevvvagcvpkaqkekvkdaeselevlgvkaierlvelveetlk..kkvlersvaktllkevkvlknelieiipinqGClskCsyCitkiArGklaSyppEkivekarelvaeGakeikltsqDtaaYGkDiGerLpeLlr.liteiegefrlRVGmmnpknvleildelievfqsekvykfLHlPvqSgsdsvLkemkReytvddfedivekfrerledltlstDiivGfptEtdddfeetlellrklrpekinvtkfspRpgteaaklkrldakikkkrskaltklkeevllekkenliGkrekVlvte....egvGev..lkdeddatvqvvisekeleigefakveitgaktayligei 420
                 kvyv+tyGC++n +dse++++ l+++Gy+lv+  + eeAd++++n+CtVk+++ d++ + i  +    k v+vagcv++a++   + ++  l+ +gv++ier+v++v e l   +  l ++ ++  l+ +kv++n+l+eiipin GCl+ C+yC+t  ArG+l Sy p     +  ++vaeG+ e++lts+D +aYG+D+G++Lp Ll+ +++ +++  +lRVGm+np+++l+ l  +++ +++++ y fLH+PvqSgs+ vL++m+Reyt+++f ++ +++ + ++ l l+tDii+G p+Et++d+++tl l+rk+r++ +n+++f+pRpgt aak+kr++++++k+r+++l+ l +  ++ +++ l+ ++ +Vlvt+    +  G +  l  +d+ +vqv+      ++g + +v++t+++++ +++ +
  MMETSP1137-20121227|5564_1 146 KVYVKTYGCSHNASDSEYMAGLLQDYGYTLVGeaSREEADVWLINSCTVKNPSQDHMATDIARGRAMDKPVIVAGCVSQAEPSLNTLQG--LSLIGVQQIERVVDVVREALAgnTVRLLERRVRPSLDLPKVRRNPLVEIIPINTGCLGSCTYCKTVYARGRLGSYEPSALLSRLDSAVAEGVAEVWLTSEDAGAYGRDLGSSLPSLLEaMLERVPEGRMLRVGMTNPPYILQQLPAIAKLLSHPRCYAFLHVPVQSGSNRVLHTMRREYTREEFCRVADTLLASVPSLLLATDIICGMPGETEEDHQQTLALVRKYRFPVLNISQFYPRPGTLAAKMKRVPTHVVKERTRELSALFN--SYTTFDTLLNTTLEVLVTDstavSRPGATpqLIAHDKGYVQVLLPYVPEHMGCWLQVRVTHTSKFHVLATV 572
                 8******************************955569*******************************************999888888..******************999653344456777889*************************************************************************************************************************************************************************************************************************************98..5889***************877745555422778999999***9999999***********9999888765 PP

>> TIGR00089  TIGR00089: radical SAM methylthiotransferase, MiaB/RimO family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  313.0   0.0   1.8e-96   6.3e-94       1     427 [.     146     568 ..     146     570 .. 0.92

  Alignments for each domain:
  == domain 1    score: 313.0 bits;  conditional E-value: 1.8e-96
   TIGR00089   1 kvyietyGCqmNeadsevmaglLkeagyevt..edeeeADvviiNTCavrekaeekviselkelaklkkkakivvaGClaqkekeellkekpevdivlgtqeverllelieeaeekekevveelekekleelprsrseeklrafikiqeGCdkkCtyCivpsaRGrerSrslekileevkelvskgvkEivLlgqnvnaYGkdlegkskladLlke.lekiegierirvtslhpkdvtdelielia..eeekvlkflhlplQsgsdeiLkrMrRkytreeyleiveklrakvpdvalstdiIVGFPgEteedFeetldlveevkfdklhvfkYspregtpaaelkdqvpeevkkeRlerLkelqkeiskeknkkyvGktlevLvee.eekkkeg...elsgrtennklvvvegkeekeligkfvkvkikeakeesl 427
                 kvy++tyGC+ N  dse+maglL++ gy+ +  ++ eeADv +iN+C+v+++++++++  + + +     + ++vaGC++q+e++    ++++   ++g q++er++++++ea +++  ++ e + +   +lp++r+ + l  +i+i  GC  +CtyC + +aRGr  S+++ ++l++++++v++gv E++L++++ +aYG+dl   s+l +Ll++ le+++    +rv++ +p  + ++l ++ +  ++++ + flh+p+Qsgs+++L  MrR+ytree+ ++ ++l a+vp + l+tdiI G PgEteed ++tl lv++ +f  l+++++ pr+gt aa+ +++vp++v keR ++L++l ++  +   + ++++tlevLv++ +  +++g   +l+++++ +  v ++    +e++g +++v++++++++++
  MMETSP1137-20121227|5564_1 146 KVYVKTYGCSHNASDSEYMAGLLQDYGYTLVgeASREEADVWLINSCTVKNPSQDHMATDIARGRAMD--KPVIVAGCVSQAEPSL---NTLQGLSLIGVQQIERVVDVVREALAGNTVRLLERRVRPSLDLPKVRR-NPLVEIIPINTGCLGSCTYCKTVYARGRLGSYEPSALLSRLDSAVAEGVAEVWLTSEDAGAYGRDLG--SSLPSLLEAmLERVPEGRMLRVGMTNPPYILQQLPAIAKllSHPRCYAFLHVPVQSGSNRVLHTMRREYTREEFCRVADTLLASVPSLLLATDIICGMPGETEEDHQQTLALVRKYRFPVLNISQFYPRPGTLAAK-MKRVPTHVVKERTRELSALFNS--YTTFDTLLNTTLEVLVTDsTAVSRPGatpQLIAHDKGYVQVLLPY--VPEHMGCWLQVRVTHTSKFHV 568
                 79***********************999987335789**************************99997..59**********9777...8889999*******************9888888888888889999985.579**************************************************************99..7******972566********************9665541166********************************************************************************************5.567****************976..567899***********8433333338889*************97..4789************99886 PP

>> TIGR01579  MiaB-like-C: MiaB-like tRNA modifying enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  213.4   0.0   4.1e-66   1.4e-63       2     385 ..     150     524 ..     149     560 .. 0.85

  Alignments for each domain:
  == domain 1    score: 213.4 bits;  conditional E-value: 4.1e-66
   TIGR01579   2 etlGCrvNqyeseslkaeliqkgyevvrddek..adviiiNtCtVTakadskarklirrlkrenpkakiivtGCyaqlepkelaelkevvlvlgnkeKdkiskllsallesavrvkekslveekeveefeevaprfeektrafvkvqdGCnkaCsyCiIpfaRGrsrSvelekvleqvkalvakgykEvvltGvnlssYgedlenglslakLlekilk.ieglkriRlsSlepeevdeellel..iasekklcphlHlslQsgsdkvLkrmrRkytrddilklveklrsvrpelalgtDiIvgfPgEteedfqetlrlvkelelsklHiFpySaRegTkaaamdakveetiakeRvkalkelaekvkqevlkkllgkelevlvekskae 385
                 +t GC  N  +se+++  l+  gy+ v + ++  adv +iN+CtV + ++ ++   i r +    +  +iv+GC++q ep +l+ l+  +l+  ++  + ++ + +al  ++vr+ e+ +  + ++++++             + ++ GC   C+yC+  +aRGr  S e  ++l+++++ va+g +Ev lt  + ++Yg+dl  g+sl +Lle +l+ +++   +R++  +p  + ++l ++  + s+++    lH+ +Qsgs++vL+ mrR+ytr+++ ++ ++l ++ p+l l+tDiI g PgEteed+q+tl lv++ ++  l i ++ +R+gT aa+m+ +v+++++keR ++l++l +  ++ +   ll+++levlv  s+a 
  MMETSP1137-20121227|5564_1 150 KTYGCSHNASDSEYMAGLLQDYGYTLVGEASReeADVWLINSCTVKNPSQDHMATDIARGRAM--DKPVIVAGCVSQAEP-SLNTLQGLSLIGVQQIERVVDVVREALAGNTVRLLERRVRPSLDLPKVRRNP------LVEIIPINTGCLGSCTYCKTVYARGRLGSYEPSALLSRLDSAVAEGVAEVWLTSEDAGAYGRDL--GSSLPSLLEAMLErVPEGRMLRVGMTNPPYILQQLPAIakLLSHPRCYAFLHVPVQSGSNRVLHTMRREYTREEFCRVADTLLASVPSLLLATDIICGMPGETEEDHQQTLALVRKYRFPVLNISQFYPRPGTLAAKMK-RVPTHVVKERTRELSALFN--SYTTFDTLLNTTLEVLVTDSTAV 524
                 799**********************998766567*************9999888888766555..5789**********6.7899998888777666656666666666677777777666666666666633......45689*********************************************************99..79*******98766**************999988754411345899*********************************************************************************************.9*************99975..5677888999*******998764 PP

>> TIGR01574  miaB-methiolase: tRNA-i(6)A37 thiotransferase enzyme MiaB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  199.6   0.0   5.7e-62   1.9e-59       1     391 [.     146     523 ..     146     572 .. 0.83

  Alignments for each domain:
  == domain 1    score: 199.6 bits;  conditional E-value: 5.7e-62
   TIGR01574   1 klfiktyGCqmnvadsekmadlllakgyeltedv..eeadvlllntCsvrekaeekvfgelGrfkklkkknadliiGvcGCvaselgekilkrapyvdlvlGtrniarleelieekltdkemvveisseesevaerlaevrnegkiksfvnimeGCdkfCtyCivPytrGeeisrdlddilqevaklaekGvkeitLLGqnvnayrGkdfegktvsfadLleelavkddierirftsshPkdldddl..ievlakesklvkllhlPvqsGssevLklmkrsytreeylelvrklkeavPnvslstdiivgfPgeteedfeetldllrevefdsafsfkyskregtpaadmkddvpeevkkerLqrlqalvneialkkvkkregktlkvLveeesr 391
                 k+++ktyGC  n  dse ma+ll+  gy+l  ++  eeadv l+n C+v++ +++++ +++ r +++ k      i v+GCv++ +    l+  + +  ++G ++i+r+ ++++e+l+  +++  +       +  l++vr +  +   ++i +GC   CtyC   y+rG+  s ++ ++l  ++ ++++Gv e+ L   +  ay G+d   +  s+ + + e +    +  +r   + P  +  +l  i+ l  +++   +lh+PvqsGs++vL++m+r+ytree+  ++  l ++vP + l+tdii g+Pgeteed ++tl l+r+ +f      ++ +r+gt aa+mk +vp +v ker + l al n+ ++      +++tl+vLv + ++
  MMETSP1137-20121227|5564_1 146 KVYVKTYGCSHNASDSEYMAGLLQDYGYTLVGEAsrEEADVWLINSCTVKNPSQDHMATDIARGRAMDKPV----I-VAGCVSQAEPS--LNTLQGL-SLIGVQQIERVVDVVREALAGNTVR--LLERRVRPSLDLPKVRRN-PLVEIIPINTGCLGSCTYCKTVYARGRLGSYEPSALLSRLDSAVAEGVAEVWLTSEDAGAY-GRDLGSSLPSLLEAMLERVPEGRM--LRVGMTNPPYILQQLpaIAKLLSHPRCYAFLHVPVQSGSNRVLHTMRREYTREEFCRVADTLLASVPSLLLATDIICGMPGETEEDHQQTLALVRKYRFPVLNISQFYPRPGTLAAKMK-RVPTHVVKERTRELSALFNSYTT--FDTLLNTTLEVLVTDSTA 523
                 68***************************987653389*************************99998865....6.89****98654..3333333.357***************7766544..44444444457*****95.58899********************************************************.**9976655544433333334444..5555555555555543388999************************************************************************************************7.8*****************99875..67899********87654 PP

>> TIGR01125  TIGR01125: ribosomal protein S12 methylthiotransferase RimO
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  161.5   0.0   2.1e-50   7.1e-48       1     380 [.     146     521 ..     146     568 .. 0.88

  Alignments for each domain:
  == domain 1    score: 161.5 bits;  conditional E-value: 2.1e-50
   TIGR01125   1 kigivsLGCpknlvDsevllgkLreaGyevv..aevedaDvvivntCafiedakeesleailelldakkkvivtGClverykeelkeeipevkallGsedveeileaieelesgkd.kvaekslieeeevkrvkltprhyaYlkvaeGCnkrCafCiiPklrGklrsrkieeilkeakrLvdegvkeiiliaqdttaYGvDlktdreaklaeLlek.Lekle.ikWirllYlyPdelvdev..ielmaesekvlpYlDiPlqhasdkiLklmrrpksaekqldlieklrekvpelvlrstfivGfPgeteedfqeLldfveearldklGvftysdeegtdaaeLpdavpeevkeerlerlmalqqrisakkleelvGkklevlidek 380
                 k+ +++ GC++n  Dse ++g L++ Gy +v  a+ e+aDv ++n C+  +++++     i      +k viv GC+++  +  l+    +   l+G++++e ++++++e + g+  +  e+ + +  ++++v+ +p  +  + +  GC   C++C     rG+l s +  ++l+ + + v+egv e+ l + d +aYG Dl     ++l +Lle+ Le+++    +r+    P  + +++  i  + ++++   +l +P+q  s+++L++mrr + +e+   + + l + vp l l + +i G Pgeteed q+ l  v++ r+  l + ++ +  gt aa+++ +vp +v +er+ +l+al ++      + l+  +levl+ + 
  MMETSP1137-20121227|5564_1 146 KVYVKTYGCSHNASDSEYMAGLLQDYGYTLVgeASREEADVWLINSCTVKNPSQDHMATDIARGRAMDKPVIVAGCVSQA-EPSLNT--LQGLSLIGVQQIERVVDVVREALAGNTvRLLERRVRPSLDLPKVRRNP-LVEIIPINTGCLGSCTYCKTVYARGRLGSYEPSALLSRLDSAVAEGVAEVWLTSEDAGAYGRDLG----SSLPSLLEAmLERVPeGRMLRVGMTNPPYILQQLpaIAKLLSHPRCYAFLHVPVQSGSNRVLHTMRREYTREEFCRVADTLLASVPSLLLATDIICGMPGETEEDHQQTLALVRKYRFPVLNISQFYPRPGTLAAKMK-RVPTHVVKERTRELSALFNSY--TTFDTLLNTTLEVLVTDS 521
                 688999***********************97335789*****************************************99.555554..355789***************999843134455555666778887766.467899**********************************************************9....88888888625667666789999999988887755588889999*******************************************************************************************996.7***************98655..567889999999988664 PP

>> TIGR04013  B12_SAM_MJ_1487: B12-binding domain/radical SAM domain protein, MJ_1487 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.9   0.0     5e-19   1.7e-16     147     372 ..     277     499 ..     241     504 .. 0.81

  Alignments for each domain:
  == domain 1    score: 57.9 bits;  conditional E-value: 5e-19
   TIGR04013 147 klklfgpiEitRGCpygCayCqtprlfgkkvRHRsiesivkyakelvdkgrkdiRfitpnalaYGskdgvkpnlekveeLLsslkkkkkkriffGtFPsevRPefvte...ealelikkyvanrrlviGaQsgsdrvLkaikRgHtvedvveavelalea..gltpvvDfIlGlPgeteedqeatlelikklvkkgakvhaHtfmpLPgtplenak..psklseevkkelgkl 372
                 ++ l+  i i  GC  +C+yC+t +  g+     +   + ++ + +++ g+ ++ +++ +a aYG  d  +     +e++L+++ +  + r+  G       P  + +    + +l+++      l++  Qsgs+rvL++++R  t e+  + ++++l     l    D+I G+Pgeteed ++tl+l++k         + +f p Pgt  +++k  p+++ +e ++el+ l
  MMETSP1137-20121227|5564_1 277 RNPLVEIIPINTGCLGSCTYCKTVYARGRLGSYEPSALLSRLDSAVAE-GVAEVWLTSEDAGAYGR-DLGSSLPSLLEAMLERVPEGRMLRV--GM----TNPPYILQqlpAIAKLLSHPRCYAFLHVPVQSGSNRVLHTMRREYTREEFCRVADTLLASvpSLLLATDIICGMPGETEEDHQQTLALVRKYRF--PVLNISQFYPRPGTLAAKMKrvPTHVVKERTRELSAL 499
                 567889999****************99998888887777777776666.*****************.544777899*********9555555..53....3455554412256677777777788*************************999997655323899*************************9654..368899********98876523777777777777766 PP

>> TIGR04014  B12_SAM_MJ_0865: B12-binding domain/radical SAM domain protein, MJ_0865 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.8   0.0    0.0008      0.27      16      89 ..     163     233 ..     149     260 .. 0.71
   2 !   32.8   0.1     2e-11   6.8e-09     166     356 ..     287     480 ..     281     521 .. 0.77

  Alignments for each domain:
  == domain 1    score: 7.8 bits;  conditional E-value: 0.0008
   TIGR04014  16 ligGilrdkGhsvelrrkldklksdvvllslfstlh.lldeairelvkkvrekggkvivgGpvsaaPelvleeld 89 
                  ++G+l+d G++  l+ + ++ ++dv l+   +  +   d+   ++++  r ++++viv+G+vs+a e  l+ l+
  MMETSP1137-20121227|5564_1 163 YMAGLLQDYGYT--LVGEASREEADVWLINSCTVKNpSQDHMATDIARG-RAMDKPVIVAGCVSQA-EPSLNTLQ 233
                 6899****9995..67777777899887766666551456666677766.**************85.44455554 PP

  == domain 2    score: 32.8 bits;  conditional E-value: 2e-11
   TIGR04014 166 hrGclGactfcqvPrffGrrirsreleeiveevkelkrkGarrlaisGGtgslygskea.idkeafiellkklse.vlGkknlsvPdirvdlvd..deileaireytiGWvffGiesGsdrilrlmkkGitvdkvleave..larevgvkvaGsfivgyPgeteedyeatkdlleelelddvfvsiaePiPgtelae 356
                   GclG+ct+c+     Gr + s e  +++  +    ++G+  + ++   +  yg + +      +  +l+++ e  + +  ++ P      +    ++l   r y   ++   ++sGs+r+l++m++  t+++ ++  +  la   ++  a   i g Pgeteed+++t  l+ +  +  + +s   P Pgt  a+
  MMETSP1137-20121227|5564_1 287 NTGCLGSCTYCKTVYARGR-LGSYEPSALLSRLDSAVAEGVAEVWLTSEDAGAYGRDLGsSLPSLLEAMLERVPEgRMLRVGMTNPPYILQQLPaiAKLLSHPRCY--AFLHVPVQSGSNRVLHTMRREYTREEFCRVADtlLASVPSLLLATDIICGMPGETEEDHQQTLALVRKYRFPVLNISQFYPRPGTLAAK 480
                 569********98877776.6778889999999999999****999999999999998634444555677777653355556666655554443113555555555..4677789*******************99987633678889*******************************************995443 PP

>> TIGR03904  SAM_YgiQ: uncharacterized radical SAM protein YgiQ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.3   0.0    0.0074       2.5     297     318 ..     284     305 ..     262     328 .. 0.85
   2 !   12.8   0.0     2e-05    0.0069     482     528 ..     435     481 ..     396     495 .. 0.86

  Alignments for each domain:
  == domain 1    score: 4.3 bits;  conditional E-value: 0.0074
   TIGR03904 297 vtshrGCfGgCsFCaiteHqgr 318
                 + ++ GC G+C++C     +gr
  MMETSP1137-20121227|5564_1 284 IPINTGCLGSCTYCKTVYARGR 305
                 67899*********98887777 PP

  == domain 2    score: 12.8 bits;  conditional E-value: 2e-05
   TIGR03904 482 vpylisahPgctledmvelaeylkklklkpeqvqdftPtPmtlstam 528
                  + +i + Pg t+ed ++  ++++k ++ + ++ +f+P P+tl++ m
  MMETSP1137-20121227|5564_1 435 ATDIICGMPGETEEDHQQTLALVRKYRFPVLNISQFYPRPGTLAAKM 481
                 5568999*************************************999 PP

>> TIGR03471  HpnJ: hopanoid biosynthesis associated radical SAM protein HpnJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.9   0.1       2.9     1e+03     196     213 ..     279     297 ..     277     299 .. 0.71
   2 !   12.4   0.0   3.4e-05     0.012     301     384 ..     394     479 ..     383     497 .. 0.82

  Alignments for each domain:
  == domain 1    score: -3.9 bits;  conditional E-value: 2.9
   TIGR03471 196 Pyvsly.tgrGckskctfc 213
                 P v +     Gc   ct+c
  MMETSP1137-20121227|5564_1 279 PLVEIIpINTGCLGSCTYC 297
                 5555441467********* PP

  == domain 2    score: 12.4 bits;  conditional E-value: 3.4e-05
   TIGR03471 301 llvGyesGdqqilknikkGlkvevarkftkdc..kklGlkvhGtfilGlPgetretirktiefakeldpetiqvslaapyPGtely 384
                 l v  +sG++++l+ +++  + e   + ++        l +  + i G+Pget+e  ++t++  ++     +++s   p PGt   
  MMETSP1137-20121227|5564_1 394 LHVPVQSGSNRVLHTMRREYTREEFCRVADTLlaSVPSLLLATDIICGMPGETEEDHQQTLALVRKYRFPVLNISQFYPRPGTLAA 479
                 5677899999999999999998877776655311334688899***************************************9765 PP

>> TIGR04107  rSAM_HutW: putative heme utilization radical SAM enzyme HutW
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   4.9e-05     0.017     158     240 ..     397     480 ..     393     509 .. 0.81

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 4.9e-05
   TIGR04107 158 GvQsfdtevRrrlgRlddreevlerleeLsa.ldraavviDLlyGLpgqteeiweeDleivaelgldGvdlYaLnllpgtplak 240
                  vQs +++v +++ R   ree ++  ++L a   +  + +D++ G+pg tee+ ++ l+ v++ +   +++ ++   pgt  ak
  MMETSP1137-20121227|5564_1 397 PVQSGSNRVLHTMRREYTREEFCRVADTLLAsVPSLLLATDIICGMPGETEEDHQQTLALVRKYRFPVLNISQFYPRPGTLAAK 480
                 59**********************9999766156677889********************999988888887777777665554 PP

>> TIGR03994  rSAM_HemZ: coproporphyrinogen dehydrogenase HemZ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   7.2e-05     0.025     206     265 ..     399     459 ..     394     471 .. 0.86

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 7.2e-05
   TIGR03994 206 qtmndktLkliGRkHtvedvveafk.larelGfdninmDlivGLpgetleeveetleevkk 265
                 q+ ++++L+++ R++t e+++++ + l  ++    + +D+i+G+pget+e+ ++tl  v k
  MMETSP1137-20121227|5564_1 399 QSGSNRVLHTMRREYTREEFCRVADtLLASVPSLLLATDIICGMPGETEEDHQQTLALVRK 459
                 788899*************99976526677888899********************98876 PP

>> TIGR01212  TIGR01212: radical SAM protein, TIGR01212 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   0.00014     0.047     140     221 ..     393     476 ..     381     492 .. 0.81

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 0.00014
   TIGR01212 140 wvelGlqtahektlkkinRghdladyveavkk..vkkrgikvcshlivgLPgedreevletakivaeldvdgiklhpLhvvkGt 221
                 ++ + +q+  ++ l+ + R+++  ++ + + +  +   ++ + + +i g+Pge+ e+  +t+ +v +     + + + +   Gt
  MMETSP1137-20121227|5564_1 393 FLHVPVQSGSNRVLHTMRREYTREEFCRVADTllASVPSLLLATDIICGMPGETEEDHQQTLALVRKYRFPVLNISQFYPRPGT 476
                 567789*****************999887766115567899**********************999877766666666655555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (775 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       103  (0.0251097); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                        23  (0.00560702); expected 4.1 (0.001)
Passed Fwd filter:                        12  (0.0029254); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.66u 0.12s 00:00:00.78 Elapsed: 00:00:00.85
# Mc/sec: 1203.43
//
Query:       MMETSP1137-20121227|5565_1  [L=333]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (333 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        91  (0.0221843); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.16s 00:00:00.41 Elapsed: 00:00:00.46
# Mc/sec: 955.49
//
Query:       MMETSP1137-20121227|5567_1  [L=62]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (62 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        34  (0.00828864); expected 82.0 (0.02)
Passed bias filter:                       34  (0.00828864); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.13s 00:00:00.26 Elapsed: 00:00:00.25
# Mc/sec: 327.33
//
Query:       MMETSP1137-20121227|5568_1  [L=933]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.1e-73  246.2   0.0    1.6e-73  245.6   0.0    1.1  1  TIGR01982 UbiB: 2-polyprenylphenol 6-hydroxylase
     0.0017   15.4   0.0      0.014   12.4   0.0    2.1  2  TIGR02721 ycfN_thiK: thiamine kinase


Domain annotation for each model (and alignments):
>> TIGR01982  UbiB: 2-polyprenylphenol 6-hydroxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  245.6   0.0   7.8e-77   1.6e-73      39     433 ..     246     648 ..     219     650 .. 0.88

  Alignments for each domain:
  == domain 1    score: 245.6 bits;  conditional E-value: 7.8e-77
   TIGR01982  39 skeearkeslgerlrlaleelGPifiKlGQvlstRaDllpeeiaeeLslLqdkvppfdlkaarkvieaelgkpve.....elFaefeekPlAaASiaQvhkAvlvegkeVavKvlRPgiekkieadikllellaklvekllpeakrlrptevvkefektlkeEldlrlEaanaselkenfkndk...klivPevyweltservltlewidgipvsdleklkeaGldlkalaenlvesflkqvlrdgfFHaDlHpGNilvakdgkiialDfGivgrlseeerrylaeillgflerdykrvaevhleagyvpsdtdlaeleqa.iravgepiv....gkplkeisigklLaklfkitekfe..levqpeLlLLqKtlltvEGvgrqldpdldlwkvaepvvkklikkklspk 433
                 ++ +a+ ++++e+l +al+elGP+ iK+GQ ls RaDl+p  ++e L+ Lqd+vp+f+  +ar+ i++el+ + +      lF++++++P+AaAS++Qv++ vl++g+eVavKv+RP++ + i+ d+ ll++lak  ++  +     + + +v++  +   +Eld+++Eaan++ + + +++ +    ++ Pev+ el ++rvlt+ w++g  ++      ++  d ++l    ++  l++ l+ g+ H D+HpGN+l ++dg++ +lD G+v +l++e +  + e +  +  +dy++v   ++ +g+vp++++ a+ ++  + a+++ +     g  +++i ++++  kl  +te+ +   +++p ++ + +++ ++EG++   dpd +++++  p++++ + +  sp+
  MMETSP1137-20121227|5568_1 246 ETLRANMRARAEQLVEALNELGPTCIKVGQALSIRADLIPLPYIEALAGLQDNVPAFPNVQARQLIAEELQLSDStggvdRLFRSLSSTPVAAASLGQVYRGVLKDGREVAVKVQRPDVLEPISLDLYLLRSLAKPFKESRNL--NTDIVGLVDDWGRGFVDELDYTREAANSESFLRSIAKTPlasVVTAPEVVGELSTKRVLTTLWVNGARLEL----SAE-DDVARLCGVALNAYLTMLLETGLLHCDPHPGNLLRTADGRLCILDWGLVTTLEPELQLRFLEHVAHLTAKDYAAVPADLVALGFVPANMEEAATSEGvVEALTDVYSqwagGGGASKIDVSEVTGKLQALTEEKGnfFQIPPYFAYVLRAFSVLEGIALMNDPDYSVLNACLPYISQRVLSDPSPR 648
                 44555667899*********************************************************99987666777789*****************************************************98877633..35899***************************99999752226888********************99853....333.4788************************************************************************************998776554145555555422224579************999988654489************************************99888776665 PP

>> TIGR02721  ycfN_thiK: thiamine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.0     0.036        74      47      75 ..     219     247 ..     206     281 .. 0.77
   2 !   12.4   0.0   6.8e-06     0.014     141     185 ..     478     523 ..     420     536 .. 0.85

  Alignments for each domain:
  == domain 1    score: 0.2 bits;  conditional E-value: 0.036
   TIGR02721  47 alsalklaPkvilvneewllvewleGevi 75 
                   + + +  +++ +    llv+wl Ge +
  MMETSP1137-20121227|5568_1 219 VAQRVAFCARPVSWYLVCLLVDWLRGEET 247
                 555667788999999999********844 PP

  == domain 2    score: 12.4 bits;  conditional E-value: 6.8e-06
   TIGR02721 141 paplklallHlDvhaeNlvkteqG.lklIDWEYAsdgDialeLaav 185
                    l+  llH D h +Nl++t++G l ++DW   +   + l+L ++
  MMETSP1137-20121227|5568_1 478 TMLLETGLLHCDPHPGNLLRTADGrLCILDWGLVTTLEPELQLRFL 523
                 5678899*****************55678**999999999888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (933 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        85  (0.0207216); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.58u 0.15s 00:00:00.73 Elapsed: 00:00:00.63
# Mc/sec: 1954.70
//
Query:       MMETSP1137-20121227|5569_1  [L=480]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.4e-30  103.6   0.0      2e-28   97.4   0.0    2.8  2  TIGR02250 FCP1_euk: FCP1-like phosphatase, phosphatase domain
    7.4e-22   75.7   0.0    1.5e-21   74.7   0.0    1.4  1  TIGR02251 HIF-SF_euk: dullard-like phosphatase domain


Domain annotation for each model (and alignments):
>> TIGR02250  FCP1_euk: FCP1-like phosphatase, phosphatase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.4   0.0   9.7e-32     2e-28       3     153 ..      76     211 ..      74     212 .. 0.88
   2 ?   -0.9   0.0      0.17   3.6e+02       8      32 ..     290     314 ..     288     341 .. 0.66

  Alignments for each domain:
  == domain 1    score: 97.4 bits;  conditional E-value: 9.7e-32
   TIGR02250   3 rekkLvLvlDlDqtlihttkeselseeekkkkeekeseklkdlkkfkleekleylvklRPfvkeflkkvsklyelhvytmgtraYakeiakllDPekklFgdrilsrdestsaktKsLkkllpadesavviiDdredvWkksk.nLikvery 153
                 r+kkL+LvlD+D+tli +++ + +s+ +               + +++++ + +   +RP++++fl+ ++ ++++++ytmg+ +Y+++++k++DP+ k+F   i   +++ s+++KsL++++ +++s+ +++Dd+ +vW     nL  ++r+
  MMETSP1137-20121227|5569_1  76 RHKKLYLVLDMDETLIYSQRLERVSHPTG--------------HLIRVHG-IXFDLVVRPGLEQFLEMMAPMFTMYLYTMGDSEYTRAVLKVIDPDDKFFTGGICCWHQHESRAKKSLSRVV-CQKSMALVVDDSPEVWGSDLpNLCPIRRF 211
                 79****************99999887654..............1222222.2333458***************************************************************9.6***************98877**999987 PP

  == domain 2    score: -0.9 bits;  conditional E-value: 0.17
   TIGR02250   8 vLvlDlDqtlihttkeselseeekk 32 
                 +Lv+D+  t++ +++e++   +++k
  MMETSP1137-20121227|5569_1 290 TLVVDFGGTVVPSVDEATHLVARQK 314
                 59*********99988776555552 PP

>> TIGR02251  HIF-SF_euk: dullard-like phosphatase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.7   0.0   7.3e-25   1.5e-21       2     159 ..      80     231 ..      79     236 .. 0.86

  Alignments for each domain:
  == domain 1    score: 74.7 bits;  conditional E-value: 7.3e-25
   TIGR02251   2 ktlvLDLDeTLvhsslkkakaieadlklevliekkiilvyVlkRPyvdeFlerlsklyelvvfTasleeYadkvldildakkkvlsrrlyRescvetngk.yvKdlslvkkdlskvviiDnsplsyslqpeNaipiksfisdenDeeLlklipflealr 159
                   lvLD+DeTL++s+  +  ++ +      li+ + i +  + RP++++Fle ++ ++ + ++T + +eY+++vl ++d+++k+++  +    c  ++++   K+ls+v  + s  +++D+sp  + +   N  pi+ f+ d++D++L +l  +l++++
  MMETSP1137-20121227|5569_1  80 LYLVLDMDETLIYSQRLERVSHPT----GHLIRVHGIXFDLVVRPGLEQFLEMMAPMFTMYLYTMGDSEYTRAVLKVIDPDDKFFTGGIC---CWHQHESrAKKSLSRVVCQKSMALVVDDSPEVWGSDLPNLCPIRRFTGDTRDDALSRLGTLLQKVH 231
                 579***********5444442333....334455688899999***************************************99988774...55555554789*********************************************9999998865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (480 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       134  (0.032667); expected 82.0 (0.02)
Passed bias filter:                      109  (0.0265724); expected 82.0 (0.02)
Passed Vit filter:                        18  (0.0043881); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.36u 0.17s 00:00:00.53 Elapsed: 00:00:00.51
# Mc/sec: 1242.25
//
Query:       MMETSP1137-20121227|5570_1  [L=471]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   2.6e-116  386.5   4.5   3.2e-116  386.2   3.1    1.1  1  TIGR03150 fabF: beta-ketoacyl-acyl-carrier-protein synthase II
    1.5e-21   72.8   4.3    2.4e-21   72.1   3.0    1.3  1  TIGR02813 omega_3_PfaA: polyketide-type polyunsaturated fatty acid synthase PfaA
     0.0027   14.5   0.1     0.0064   13.3   0.1    1.7  1  TIGR01930 AcCoA-C-Actrans: acetyl-CoA C-acetyltransferase


Domain annotation for each model (and alignments):
>> TIGR03150  fabF: beta-ketoacyl-acyl-carrier-protein synthase II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  386.2   3.1  2.4e-119  3.2e-116       1     406 [.      62     466 ..      62     467 .. 0.97

  Alignments for each domain:
  == domain 1    score: 386.2 bits;  conditional E-value: 2.4e-119
   TIGR03150   1 rrvvvtGlGlvtplgndveetwenllagksgikkitkfdasdlkvkiagevkdfdpeeyldkkearrldrfiqyalaaakealedagleleeedaervgvivgsGiGGletieeqakklkekgprrvsPffipsaiinlaagqvsiklglkgpnlavvtACatgthaigeaarlikegeadvmiagGaeaaitelgiagFaalkalst.rnddpekasrPfdkdrdGFvlgeGagvlvlEelehAkaRgAkiyaevvGyglsaDAyHitapaeegegaaramkaalkdagl..kpeevdyinaHgtstplgdkaEtkaikkvfgehakklavsstKsmtGHlLGaaGaveavitvlaleeqvvpptinleepdeecdldyvpnkareakievalsnsfGFGGtnaslvl 406
                 rrvvvtG+G+v+ lgn+ e++ ++l ++ksgik    +  + +k++i g+  d+d ++++d+k+ar + + +++a +a ++a++dagl+ ee +++rvg i+g G   ++ i+e+ +++  k  rrv P+ +  a+   +++ ++ ++ l+gp++++++AC+tg+h+ig +++ i+ ++adv+ +g  ea    +++  F +++alst +nd+pe+asrPfd +rdGFv++ G+gv+vlEelehAkaRgAkiy+e+vGy++++D + + ap+  g g +++m+ a+k+a+     ++v+yin+Hgtstp+gd  E++ ik+vf e+ ++  v stKs  GH LGaaG  ea++++l l+e+++ +  n++e  +e +   + ++ ++ +++ ++snsfGFGGtna+lv+
  MMETSP1137-20121227|5570_1  62 RRVVVTGMGIVSCLGNTLEDVTTSLKEAKSGIKYNPIYAEKGMKSHICGR-PDIDCDSLIDRKQARFMGENAKFAYIAMERAIADAGLTPEEINSDRVGGILGQGGTSINDIAETLDAVAAKKLRRVGPYRVTRAMGSTVSAVLATAFKLQGPSYSISSACSTGAHCIGVGMEQIQLDKADVVFCGSGEAEDWGFSV-MFDSMTALSTkYNDTPETASRPFDVSRDGFVIAGGGGVVVLEELEHAKARGAKIYGELVGYAANSDGFDMVAPS--GLGGQNCMRLAMKMANKigGEKQVEYINTHGTSTPVGDLKELDGIKTVFTEAGYQPYVGSTKSLSGHALGAAGVHEAIYSLLMLKEGFLAESANIKELVPEAEGMNILTERKDGEVKRVMSNSFGFGGTNACLVF 466
                 7**********************************************998.59*****************************************************************************************************************************************9999988.5*********99**********************************************************9987..999***********984346789********************************************************************************777888999**********************9 PP

>> TIGR02813  omega_3_PfaA: polyketide-type polyunsaturated fatty acid synthase PfaA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.1   3.0   1.8e-24   2.4e-21     181     463 ..     196     470 ..     192     471 .] 0.86

  Alignments for each domain:
  == domain 1    score: 72.1 bits;  conditional E-value: 1.8e-24
   TIGR02813 181 lGnvisGrianrfdlGGmncvvdaacaGslaalrlalselvegrsevmitGGvctdnspfmymsfsktpaft....tned.iqpfdidskGmmiGeGiGmvalkrledaerdGdriyavikGvGassdGkfksiyaprpeGqakalkrayddaGf..apktvGlieahGtGtaaGdvaefsGlssvfsqdndqkqhialGsvksqiGhtkstaGtaGlikaalalhhkvlpatinvdkpnpkldiedsplylntetrpwlqredglprraGissfGfGGtnfhlvleeys 463
                 +G  +s  +a  f l G    + +ac+     + + + ++  ++++v+  G   +++  f  m  s t   t    t e+  +pfd+   G +i  G G+v l  le a+  G +iy  + G  a sdG f  + ap   G    ++ a + a      k v  i++hGt t  Gd  e+ G++ vf++   q     +Gs ks  Gh+  +aG    i + l l+   l  + n+++  p+       + + t      +r+dg  +r    sfGfGGtn  lv+++y+
  MMETSP1137-20121227|5570_1 196 MGSTVSAVLATAFKLQGPSYSISSACSTGAHCIGVGMEQIQLDKADVVFCGSGEAEDWGFSVMFDSMTALSTkyndTPETaSRPFDVSRDGFVIAGGGGVVVLEELEHAKARGAKIYGELVGYAANSDG-FD-MVAPSGLGGQNCMRLAMKMANKigGEKQVEYINTHGTSTPVGDLKELDGIKTVFTEAGYQP---YVGSTKSLSGHALGAAGVHEAIYSLLMLKEGFLAESANIKELVPE----AEGMNILT------ERKDGEVKRVMSNSFGFGGTNACLVFDKYQ 470
                 79999*********************************************988888877766655555443311114444269**********************************************.54.6789888877777777776653114699***************************988775...58*************************************987765....44565555......599************************996 PP

>> TIGR01930  AcCoA-C-Actrans: acetyl-CoA C-acetyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   0.1   4.7e-06    0.0064      63     111 ..     201     249 ..     132     279 .. 0.92

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 4.7e-06
   TIGR01930  63 eaalaaglpesvpaltvnrvCaSglqAvalaaqkikaGeadvvvaGGvE 111
                  a+la+ ++ + p+++++ +C++g + + +++++i+  +advv  G+ E
  MMETSP1137-20121227|5570_1 201 SAVLATAFKLQGPSYSISSACSTGAHCIGVGMEQIQLDKADVVFCGSGE 249
                 58999999***********************************999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (471 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       135  (0.0329108); expected 82.0 (0.02)
Passed bias filter:                      101  (0.0246221); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.45u 0.17s 00:00:00.62 Elapsed: 00:00:00.64
# Mc/sec: 971.36
//
Query:       MMETSP1137-20121227|5571_1  [L=85]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (85 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        40  (0.00975134); expected 82.0 (0.02)
Passed bias filter:                       39  (0.00950756); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.14s 00:00:00.26 Elapsed: 00:00:00.26
# Mc/sec: 431.50
//
Query:       MMETSP1137-20121227|5572_1  [L=523]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (523 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       391  (0.0953194); expected 82.0 (0.02)
Passed bias filter:                       34  (0.00828864); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.15s 00:00:00.51 Elapsed: 00:00:00.37
# Mc/sec: 1865.68
//
Query:       MMETSP1137-20121227|5573_1  [L=206]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (206 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        64  (0.0156021); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.19s 00:00:00.37 Elapsed: 00:00:00.52
# Mc/sec: 522.88
//
Query:       MMETSP1137-20121227|5574_1  [L=562]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (562 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       105  (0.0255973); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.14s 00:00:00.50 Elapsed: 00:00:00.66
# Mc/sec: 1123.91
//
Query:       MMETSP1137-20121227|5575_1  [L=156]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (156 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        94  (0.0229157); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.15s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 710.01
//
Query:       MMETSP1137-20121227|5576_1  [L=426]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (426 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       184  (0.0448562); expected 82.0 (0.02)
Passed bias filter:                      116  (0.0282789); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.15s 00:00:00.46 Elapsed: 00:00:00.54
# Mc/sec: 1041.25
//
Query:       MMETSP1137-20121227|5577_1  [L=99]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (99 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       270  (0.0658216); expected 82.0 (0.02)
Passed bias filter:                      219  (0.0533886); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.18s 00:00:00.32 Elapsed: 00:00:00.80
# Mc/sec: 163.34
//
Query:       MMETSP1137-20121227|5578_1  [L=301]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (301 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       146  (0.0355924); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.12s 00:00:00.37 Elapsed: 00:00:00.63
# Mc/sec: 630.61
//
Query:       MMETSP1137-20121227|5579_1  [L=262]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (262 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        71  (0.0173086); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.14s 00:00:00.35 Elapsed: 00:00:00.45
# Mc/sec: 768.47
//
Query:       MMETSP1137-20121227|5580_1  [L=1384]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00026   16.6  28.8    0.00026   16.6  20.0    2.9  3  TIGR02168 SMC_prok_B: chromosome segregation protein SMC
  ------ inclusion threshold ------
       0.25    6.7  42.9     0.0016   14.0  15.6    2.8  3  TIGR02169 SMC_prok_A: chromosome segregation protein SMC


Domain annotation for each model (and alignments):
>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   1.0     0.017        35     355     954 ..     299     394 ..     270     413 .. 0.32
   2 !   16.6  20.0   1.3e-07   0.00026     729     951 ..     569     787 ..     563     813 .. 0.83
   3 !    2.4   3.9    0.0026       5.4     329     416 ..     907     980 ..     849    1012 .. 0.52

  Alignments for each domain:
  == domain 1    score: -0.3 bits;  conditional E-value: 0.017
   TIGR02168 355 sleaeleeaeaelee..lesrleeleeeleelrsevaeleeqlaslnaelerleaeleqleerrerlkqeieelekkleeaeaelkelqeeleeleeeleeleeelerleealeeleeeleeaeqalqkaeeelaqlqarlesleslqenleglsegvkallknksklagilgvlselieveekyeaAieaalgerlqavvveneeaakkaiealkknelGrvtflpldvikgaeieaseaevlkseegvlgvakdlvkvdeklekalealLggvlvvddldsAlelakklraeerivtldGelvrrggvitggsektessilerkkeieeleeeieeleekiaelekelkelekeleeleeeleklrkeleelerklselkkelerlekeveqleerlaqlekeleeleeereeleeeleeaeeelkeaeeeieeleaeieqlkeelkalrealseleaeltelkeeaaekeerleslekeiaalekeleeleeqieeleeeiesleaeieeleeeleeleeeleellkekasleealaelreeleelseelrelekkvkelereleelreklaqlelrleeleveiaelqerlseeyele 954
                 sl+++le + +el++  +++r + l++ + ++ +++ +++e+                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          +s+el +le+ v+++ +  +++ ++  + ++ l  + +e ++  ++l e+ ++ 
  MMETSP1137-20121227|5580_1 299 SLKKALEDLTRELRKqlVQQRDQWLTASIPTAPEAIIQAREE--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------VSRELGQLERFVSRAYATGDATSSAALTSSELLHDIWQETEQAGTELVEKLSTL 394
                 222222221111111001111111122222222222222222..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................222222222222222222222222222222222222222222222222222222 PP

  == domain 2    score: 16.6 bits;  conditional E-value: 1.3e-07
   TIGR02168 729 klselkkelerlekeveqleerlaqlekeleeleeereeleeeleeaeeelkeaeeeieeleaei.eqlkeelkalrealseleaeltelkeeaaekeerleslekeiaalekeleeleeqieeleeeiesleaeieeleeeleeleeeleellkekasleealaelreeleelseelrelekkvkelereleelreklaqlelrleeleveiaelqerlseey 951
                 +l+e  + +++++++   +e++l+    +  +  +er+ l++ l +ae++l+ a+e++++ e ++ e+l++el+a +++ ++ + +l  l + +ae  ++l++ e++   le  l+ ++ +++++e++ + ++ae +  ++++++ +++l+e++   +  +++ ae  ++++++++e+rel++k+  le+++  l+++l++le++   l+ ++++l+ +l++++
  MMETSP1137-20121227|5580_1 569 HLAEVAAVAQTFRRSLGDAEQQLQACGVHADDWLAERQILRRSLGDAEQQLQDAQEQLQACEVQVtERLQTELQAVEDRADDEHGALALLATWLAE--NELKDAENNRLYLEADLKAARLRMADAEADRA-VAAETDAENRAEQKYQAALKEVQSCEQ--AHQAAESVAKMQQVDQEVRELQRKRVGLEAAIAPLETELKALEKQELALQETLDHLKLELASQV 787
                 5667778888999999999999999999***********************99999999888666267899********************99995..779999********999999999999999998.777777777777777777777776664..3344444456779********************************9999999999999998765 PP

  == domain 3    score: 2.4 bits;  conditional E-value: 0.0026
   TIGR02168 329 eskkeeleeelaeleeeleelkeelesleaeleeaeaeleelesrleeleeeleelrsevaeleeqlaslnaelerleaeleqleerr 416
                 e+++ ++              +e++esl+a +++a ++++   s ++e e+ ++  ++++    +q+ ++n+  +++++ + ql+ + 
  MMETSP1137-20121227|5580_1 907 EQQQRRS--------------SEQMESLQAVIDAAVSQVQSRDSLAREREQLIRVHNRRLELQAKQAHEHNNLCRQIDSLKAQLTVKI 980
                 2222222..............2222222222222222222222222222222222222222222222222222222222222222222 PP

>> TIGR02169  SMC_prok_A: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.2     0.017        35     360     490 ..     297     384 ..     268     428 .. 0.37
   2 ?   14.0  15.6   7.7e-07    0.0016     706     905 ..     578     782 ..     565     817 .. 0.56
   3 ?    2.5   4.4    0.0023       4.6     366     449 ..     905     988 ..     847    1004 .. 0.74

  Alignments for each domain:
  == domain 1    score: -0.4 bits;  conditional E-value: 0.017
   TIGR02169 360 lkelkeeleelraeleevdkeaaelreelkelkekleklkeelnelkreldrlleelkrleeelaelkaelerieekiaeleeeleelaeeikkaeqkleqlkedlekaekelrklkeeleklekelsele 490
                 +++lk+ le+l +el +   +                                        ++ + l a +     + +++ +++ee+  e+ + e+ ++++ +  ++ ++     +e l+++ +e +++ 
  MMETSP1137-20121227|5580_1 297 VASLKKALEDLTRELRKQLVQ----------------------------------------QRDQWLTASIP---TAPEAIIQAREEVSRELGQLERFVSRAYATGDATSSAALTSSELLHDIWQETEQAG 384
                 222222222222222211111........................................11111111111...11112222222222333333333333333333333333333333333333333332 PP

  == domain 2    score: 14.0 bits;  conditional E-value: 7.7e-07
   TIGR02169 706 delssklsdaekkieeiekeleqleeeeeklkerleeleeklseleeeleekkee.lkeleaeieeleeklaklkealedleaelseekieeieeelekleeevsriearleeiea..elnklelekelleeeiqelqeeieelee..qkkeiekeieelkakleeleeeleeleaavreLeeelkdLkkereeleaelrelekk 905
                 +  +++l dae+++++   +++   +e++ l++ l + e++l+  +e+l++ + +  ++l+ e+++ e ++ + + al+ l   l+e++++  e++   le+ ++  + r++++ea  ++ +++  ++ +e++ q + +e++ +e+  q +e  +++++  ++++el+++   leaa++ Le elk L+k+   l++ l +l+ +
  MMETSP1137-20121227|5580_1 578 QTFRRSLGDAEQQLQACGVHADDWLAERQILRRSLGDAEQQLQDAQEQLQACEVQvTERLQTELQAVEDRADDEHGALALLATWLAENELKDAENNRLYLEADLKAARLRMADAEAdrAVAAETDAENRAEQKYQAALKEVQSCEQahQAAESVAKMQQVDQEVRELQRKRVGLEAAIAPLETELKALEKQELALQETLDHLKLE 782
                 4445555566666666666666666666666666666666666666666655543134566666666777777777777777777777777766666666666666666555544400344444455555555555555555554311333444455555555555555555555555555555555555555555555554433 PP

  == domain 3    score: 2.5 bits;  conditional E-value: 0.0023
   TIGR02169 366 eleelraeleevdkeaaelreelkelkekleklkeelnelkreldrlleelkrleeelaelkaelerieekiaeleeeleelae 449
                 + e+ +++  e  ++ +++ ++  ++ +  ++l +e+++l r ++r le + ++ +e ++l  ++ +++++++    e++++ e
  MMETSP1137-20121227|5580_1 905 KDEQQQRRSSEQMESLQAVIDAAVSQVQSRDSLAREREQLIRVHNRRLELQAKQAHEHNNLCRQIDSLKAQLTVKILERDNVVE 988
                 344455555566666777777777777777888888888888888888888888888888888888888877655555554444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1384 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       252  (0.0614334); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.74u 0.30s 00:00:01.04 Elapsed: 00:00:01.09
# Mc/sec: 1675.90
//
Query:       MMETSP1137-20121227|5581_1  [L=477]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00031   18.6   3.5     0.0019   16.0   2.4    2.1  1  TIGR03296 M6dom_TIGR03296: M6 family metalloprotease domain


Domain annotation for each model (and alignments):
>> TIGR03296  M6dom_TIGR03296: M6 family metalloprotease domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   2.4   4.6e-07    0.0019     144     239 ..     268     349 ..     139     372 .. 0.64

  Alignments for each domain:
  == domain 1    score: 16.0 bits;  conditional E-value: 4.6e-07
   TIGR03296 144 idgttigskklvgdytiqpedagvgVlaHElGHdlglPDlYdtsydgggetpvGdWslMssGswagkgstppdmkawlkeklgWlneqsvatkrgk 239
                  +++ +++      y+ +   +   V aHE+GH+lgl++  +++++ g++++v  +   s+ sw         ++a ++ +lgWl  + va+++  
  MMETSP1137-20121227|5581_1 268 HPNAAVRN---GVCYSYIRTTL-QMVRAHEFGHNLGLGHSGQYTDEYGDSSAVMGY---SRPSWL-------VFNAAHRFQLGWLAANDVADASYV 349
                 55666666...33355555555.5699************98874444433333333...455666.......799***********9999887655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (477 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        75  (0.0182838); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.21u 0.25s 00:00:00.46 Elapsed: 00:00:00.46
# Mc/sec: 1368.67
//
Query:       MMETSP1137-20121227|5582_1  [L=345]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.5e-24   83.6   0.1      1e-23   81.7   0.1    1.9  1  TIGR02356 adenyl_thiF: thiazole biosynthesis adenylyltransferase ThiF
    2.5e-17   61.3   0.0    4.1e-17   60.6   0.0    1.4  1  TIGR02354 thiF_fam2: thiamine biosynthesis protein ThiF
    6.9e-14   49.6   0.0    1.1e-13   48.9   0.0    1.4  1  TIGR02355 moeB: molybdopterin synthase sulfurylase MoeB
    7.3e-07   26.6   0.3    4.3e-06   24.1   0.2    2.2  1  TIGR03736 PRTRC_ThiF: PRTRC system ThiF family protein
    6.9e-05   18.5   0.0    8.4e-05   18.3   0.0    1.1  1  TIGR01408 Ube1: ubiquitin-activating enzyme E1


Domain annotation for each model (and alignments):
>> TIGR02356  adenyl_thiF: thiazole biosynthesis adenylyltransferase ThiF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.7   0.1   1.2e-26     1e-23       2     203 .]      88     303 ..      87     303 .. 0.85

  Alignments for each domain:
  == domain 1    score: 81.7 bits;  conditional E-value: 1.2e-26
   TIGR02356   2 yarqlllkeige.egqqklleskvliiGaGgLgsavaeylaaaGvgtiaivDdDevdlsNlqrqilfaeedvkrpKveaaaerlkelnseirvealkeev......taenleelieq........vdlvlDctDnfktrylindaceaagkPlisaavvg..feGqvavldsskgpclrcllpeapaadtaksCaeaGvigpvvgvigslqaleAlkll 203
                 y+r ++lk +g+ +  +++++ ++ +iG+Gg+g  vae+l + G+g++ i D D+++l N+++ + ++ e+ + +K+ a +++++eln++  +e+ + +v      ++++ +e +++        v+l++ c Dn+++r+ +++++e+ + P++   v    ++G v ++ ++++++l + l +  + ++a sC  +  ++ + ++i+ l a++Alk+l
  MMETSP1137-20121227|5582_1  88 YSRLMALKTMGIvKNYERVRDFSIALIGIGGVGVGVAEMLTRCGIGKLIIYDYDTIELANMNK-MFYRPEQSGWNKTMACRHYCSELNPDTIFEVHNINVameesgNKQKFKETLSNgsidrkspVNLIIGCVDNMEARQTMEAMSEELQVPYMDCVVSDdaMQGCVQLIIPGRTGGLEASLIKSHMDKRAGSCPAS--LPTTDSIIAGLAAQNALKYL 303
                 8999*******63789*********************************************86.89***********************98777655555111111333445444432222222267**************************99888743399******************999999999999875..9****************997 PP

>> TIGR02354  thiF_fam2: thiamine biosynthesis protein ThiF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.6   0.0     5e-20   4.1e-17      14     102 ..     101     189 ..      86     236 .. 0.87

  Alignments for each domain:
  == domain 1    score: 60.6 bits;  conditional E-value: 5e-20
   TIGR02354  14 kvveklkkasvaiaGlGGlGsnvainlaraGigklilvdfdvvepsnlnrqqykvsdvGkkktealkeqiseinPyveieiidekidee 102
                 k +e++++ s+a+ G+GG+G  va  l+r Gigkli+ d+d +e +n+n+  y+ ++ G +kt a ++  se+nP + +e+ + ++  e
  MMETSP1137-20121227|5582_1 101 KNYERVRDFSIALIGIGGVGVGVAEMLTRCGIGKLIIYDYDTIELANMNKMFYRPEQSGWNKTMACRHYCSELNPDTIFEVHNINVAME 189
                 6689999********************************************************************99888877666433 PP

>> TIGR02355  moeB: molybdopterin synthase sulfurylase MoeB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.9   0.0   1.4e-16   1.1e-13       5     145 ..      88     242 ..      84     310 .. 0.82

  Alignments for each domain:
  == domain 1    score: 48.9 bits;  conditional E-value: 1.4e-16
   TIGR02355   5 ynrqiilkaldf.dGqeklkaskvlivGlGGlGcaasqylaaaGvGrltlvdfdtvelsnlqrqvlhsdanigqpkvesakdaleelnph..ieietinakldd....eelaaliak........hdvvvdctdnvevrnqlnrqcfaakvplvsg 145
                 y+r + lk++ + +  e++++ ++ ++G+GG+G   ++ l+  G+G+l++ d+dt+el+n+++  +++  + g +k  + ++  +elnp    e++ in  +++    +++++ +++        +++++ c dn+e r+ +++   + +vp + +
  MMETSP1137-20121227|5582_1  88 YSRLMALKTMGIvKNYERVRDFSIALIGIGGVGVGVAEMLTRCGIGKLIIYDYDTIELANMNKM-FYRPEQSGWNKTMACRHYCSELNPDtiFEVHNINVAMEEsgnkQKFKETLSNgsidrkspVNLIIGCVDNMEARQTMEAMSEELQVPYMDC 242
                 9999******973678*********************************************976.5666678*****************7335888898877652222455554433222222335789****************99999997654 PP

>> TIGR03736  PRTRC_ThiF: PRTRC system ThiF family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.1   0.2   5.3e-09   4.3e-06      10     129 ..     107     234 ..     102     260 .. 0.74

  Alignments for each domain:
  == domain 1    score: 24.1 bits;  conditional E-value: 5.3e-09
   TIGR03736  10 kkvkvvlvGaGGtGsqllegLarlhkalkalGhpaGlkvtvlDdDtvseanvgRqafapadvGankaivlvqRvnqll.gldWeakperleveealssa.................dlvigavDnrkaRkailealee 129
                 + ++++l+G+GG G  + e L r        G     k  ++D Dt+  an+ +  + p + G nk ++  +   +l   + +e ++ ++++ee+ +++                 +l+ig+vDn +aR+++++  ee
  MMETSP1137-20121227|5582_1 107 RDFSIALIGIGGVGVGVAEMLTRC-------GIG---KLIIYDYDTIELANMNKMFYRPEQSGWNKTMACRHYCSELNpDTIFEVHNINVAMEESGNKQkfketlsngsidrkspvNLIIGCVDNMEARQTMEAMSEE 234
                 56899*********9999988774.......443...5699*************************98776555554434555555555555444333333455556666667788**************98876654 PP

>> TIGR01408  Ube1: ubiquitin-activating enzyme E1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.0     1e-07   8.4e-05     411     548 ..     100     241 ..      55     269 .. 0.73

  Alignments for each domain:
  == domain 1    score: 18.3 bits;  conditional E-value: 1e-07
   TIGR01408 411 aklqkkledlkvflvGaGaiGcellknlallGvatgkkGkitvtdddlieksnlnrqflfrprdigkaksevaasavavinprlkieayqnrvgpet........etifddefyek..lsvvvnaldnvearlyvdsrclffekPlle 548
                  k  ++++d ++ l+G G +G  +   l+  G+     Gk+ + d d ie +n+n+ f +rp + g  k+ +  + ++ +np    e +   v+ e         et+ +     k   ++++  +dn+ear+ ++      + P ++
  MMETSP1137-20121227|5582_1 100 VKNYERVRDFSIALIGIGGVGVGVAEMLTRCGI-----GKLIIYDYDTIELANMNKMF-YRPEQSGWNKTMACRHYCSELNPDTIFEVHNINVAMEEsgnkqkfkETLSNGSIDRKspVNLIIGCVDNMEARQTMEAMSEELQVPYMD 241
                 455688999999999999999987666655554.....8999************9987.89********999999999***9987666666665543111112225555555544422468999999999999887766666666666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (345 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       166  (0.0404681); expected 82.0 (0.02)
Passed bias filter:                      136  (0.0331546); expected 82.0 (0.02)
Passed Vit filter:                        22  (0.00536324); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.33u 0.20s 00:00:00.53 Elapsed: 00:00:00.52
# Mc/sec: 875.70
//
Query:       MMETSP1137-20121227|5583_1  [L=238]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (238 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        29  (0.00706972); expected 82.0 (0.02)
Passed bias filter:                       28  (0.00682594); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.15s 00:00:00.34 Elapsed: 00:00:00.28
# Mc/sec: 1121.91
//
Query:       MMETSP1137-20121227|5584_1  [L=231]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.11    8.6   1.9      0.094    8.8   1.3    1.1  1  TIGR00934 2a38euk: potassium uptake protein, Trk family
       0.52    6.7  17.1       0.66    6.4  11.9    1.2  1  TIGR01651 CobT: cobaltochelatase, CobT subunit
       0.98    5.6  20.8        1.3    5.1  14.4    1.1  1  TIGR02442 Cob-chelat-sub: cobaltochelatase subunit


Domain annotation for each model (and alignments):
>> TIGR00934  2a38euk: potassium uptake protein, Trk family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   1.3   6.9e-05     0.094     342     439 ..     164     213 ..      34     230 .. 0.61

  Alignments for each domain:
  == domain 1    score: 8.8 bits;  conditional E-value: 6.9e-05
   TIGR00934 342 ktidraeasdleeldrakdfqkmveknvkaakrkkknfkkreanlklfeksryakksdrneedngnkkdasksneseevsldseenayptyndeeeds 439
                 k  +  ++ d++e +++++ +k  +k+ ++ +++k++  k+e ++                                                +eed 
  MMETSP1137-20121227|5584_1 164 KKEEDKKEEDEKEQNKKEEDKKEDKKEEDKEEEDKEEEDKKEEDN------------------------------------------------KEEDK 213
                 111111111111111111111111111111111111111111111................................................11111 PP

>> TIGR01651  CobT: cobaltochelatase, CobT subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4  11.9   0.00048      0.66     200     256 ..     162     219 ..     117     229 .. 0.50

  Alignments for each domain:
  == domain 1    score: 6.4 bits;  conditional E-value: 0.00048
   TIGR01651 200 aeelgdd..eesedeedtdddqpredeqeeegeeeeegdeasaaeeaeaaeeeeesgee 256
                 +e+  +d  ee+e+e+++++++ +ed++ee+ eee++++e+ + e+ +  e+++es+++
  MMETSP1137-20121227|5584_1 162 SEKKEEDkkEEDEKEQNKKEEDKKEDKKEEDKEEEDKEEEDKKEED-NKEEDKKESADT 219
                 3333333112222222222233333333333333333333332222.223333333333 PP

>> TIGR02442  Cob-chelat-sub: cobaltochelatase subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1  14.4   0.00099       1.3     320     375 ..     165     219 ..     142     230 .. 0.39

  Alignments for each domain:
  == domain 1    score: 5.1 bits;  conditional E-value: 0.00099
   TIGR02442 320 ekeekkleekkeeakpdeekedeseekekeeskkqeeeepgkddekeedekeeaee 375
                 ++e+kk+e++ke++k++e+k+++++e++kee +++eee+ +++d+keed+ke+a+ 
  MMETSP1137-20121227|5584_1 165 KEEDKKEEDEKEQNKKEEDKKEDKKEEDKEE-EDKEEEDKKEEDNKEEDKKESADT 219
                 1222222222222222222222222222222.111122222222233333332222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (231 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       395  (0.0962945); expected 82.0 (0.02)
Passed bias filter:                      171  (0.041687); expected 82.0 (0.02)
Passed Vit filter:                        47  (0.0114578); expected 4.1 (0.001)
Passed Fwd filter:                        14  (0.00341297); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.39u 0.17s 00:00:00.56 Elapsed: 00:00:00.43
# Mc/sec: 709.06
//
Query:       MMETSP1137-20121227|5585_1  [L=1177]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1177 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        99  (0.0241346); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.66u 0.16s 00:00:00.82 Elapsed: 00:00:00.77
# Mc/sec: 2017.55
//
Query:       MMETSP1137-20121227|5586_1  [L=837]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (837 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       145  (0.0353486); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.52u 0.15s 00:00:00.67 Elapsed: 00:00:00.47
# Mc/sec: 2350.53
//
Query:       MMETSP1137-20121227|5587_1  [L=98]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (98 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        32  (0.00780107); expected 82.0 (0.02)
Passed bias filter:                       29  (0.00706972); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.13s 00:00:00.26 Elapsed: 00:00:00.26
# Mc/sec: 497.50
//
Query:       MMETSP1137-20121227|5588_1  [L=117]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (117 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        90  (0.0219405); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.15s 00:00:00.30 Elapsed: 00:00:00.32
# Mc/sec: 482.59
//
Query:       MMETSP1137-20121227|5589_1  [L=390]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (390 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       117  (0.0285227); expected 82.0 (0.02)
Passed bias filter:                      104  (0.0253535); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.16s 00:00:00.46 Elapsed: 00:00:00.77
# Mc/sec: 668.52
//
Query:       MMETSP1137-20121227|5590_1  [L=250]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00094   15.2   0.2      0.017   11.0   0.1    2.0  2  TIGR00870 trp: transient-receptor-potential calcium channel protein


Domain annotation for each model (and alignments):
>> TIGR00870  trp: transient-receptor-potential calcium channel protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.0   0.1   4.1e-06     0.017     149     206 ..     126     169 ..     104     175 .. 0.57
   2 !   10.0   0.0   8.3e-06     0.034     129     159 ..     139     169 ..     136     202 .. 0.75

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 4.1e-06
   TIGR00870 149 lLlekgasvearakgdefvksqekdslyhgespLnlaaclasesivsllsedpAdilt 206
                 +Ll+ ga+ ++ +              ++g+ pL +aa ++  + v+ll+ ++Ad+ +
  MMETSP1137-20121227|5590_1 126 ALLAAGANPNISC--------------SFGRTPLLVAATMGHRACVELLILNGADVYL 169
                 5555555444433..............4666666666666666666666666666644 PP

  == domain 2    score: 10.0 bits;  conditional E-value: 8.3e-06
   TIGR00870 129 tkgitalilAihkqnyeivklLlekgasvea 159
                 ++g t+l +A+      +v+lL+ +ga+v +
  MMETSP1137-20121227|5590_1 139 SFGRTPLLVAATMGHRACVELLILNGADVYL 169
                 4566777777777777777777777776654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (250 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       108  (0.0263286); expected 82.0 (0.02)
Passed bias filter:                       97  (0.023647); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.25u 0.19s 00:00:00.44 Elapsed: 00:00:00.43
# Mc/sec: 767.38
//
Query:       MMETSP1137-20121227|5591_1  [L=1194]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.2e-30  104.0   0.1    1.8e-30  103.4   0.1    1.1  1  TIGR03903 TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
    1.8e-10   38.4   0.1    4.1e-10   37.3   0.1    1.5  1  TIGR03724 arch_bud32: Kae1-associated kinase Bud32
    2.1e-05   22.5   0.0      0.013   13.5   0.0    3.4  4  TIGR00229 sensory_box: PAS domain S-box protein


Domain annotation for each model (and alignments):
>> TIGR03903  TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  103.4   0.1   1.3e-33   1.8e-30      36     279 ..     876    1118 ..     834    1132 .. 0.79

  Alignments for each domain:
  == domain 1    score: 103.4 bits;  conditional E-value: 1.3e-33
   TIGR03903   36 shPnivaLlDsGeaedgllFavFeyveGrtlrevLaadGaLpaaetgrLmlqvLDalaaahdaGvvhRDLkPqnimvsaadveshakvLDFGigaLlpgvedadeatltrttevlGsPaYaaPeqLRgep..vtaksDlYaWGLivleCLtGkrvvqGasvaevlykqLsPvdvslP.saiaghpLg.evLRkalnkdvrqRaasaealaer..fralelaalvGilrageraGrkaiaePlvaaGtlae 279 
                  s P +v ++   e  + +l  v e      ++++L+  G+L  ++t+ Lm+ v  al + h+ G+vhRDLkP+n++++ ++     k+ DFG++ +     ++ e+ l r+  ++G+P Y aPe +Rg +  v  +sD +++G i+ e +tG +  qGa va+++   Ls   ++ P s+ +  p + ++L + l  ++rqR   a +++ +  fra++ +    +  ag++a ++   +P++    + +
  MMETSP1137-20121227|5591_1  876 SSPFVVTIFYAFEDME-RLHLVMECLS-SDVKHLLQRRGVLDETHTVSLMADVTLALEHLHACGIVHRDLKPENMLLTYEGR---VKLADFGLSHISE-RTAMSEKDLARDPSIVGTPFYMAPETIRGKArgVEHASDWWSFGAILYELITGFTPFQGAKVADIYRAILS-MTFACPiSSCNISPAAiDLLTRLLVPNPRQRLVGAAHIMAHpfFRAVDWPTHTYTASAGAGAAPEDAVAPAMHNLATLG 1118
                  5566666555555444.6777777765.4689**********************************************9886...6788*****9865.55669************************98446789***************************9888888.5688883344545544489**************9999876555899999999888888888888877778776644444 PP

>> TIGR03724  arch_bud32: Kae1-associated kinase Bud32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.3   0.1     3e-13   4.1e-10      12     148 ..     832     976 ..     828     981 .. 0.81

  Alignments for each domain:
  == domain 1    score: 37.3 bits;  conditional E-value: 3e-13
   TIGR03724  12 lgeflglkavvKeRvkKsYrhpelDe.klrkeRtrkEarllseakkagvntPvvydvdpeekkivmeyiegkklkdlleekel.......ellkevGelvgklHkagivhgDlttsNiivk.ddklyliDfGLgkkskevedkavD 148
                 +g+ +    v K+ ++  +  + +D+ + r +R  +E ++l  + +  v t    + d e+ ++vme +++ ++k+ll+++         +l+ +v  ++ +lH  givh Dl ++N++++ ++++ l DfGL+++s++      D
  MMETSP1137-20121227|5591_1 832 RGSHAAVYLVRKRQTQDVFAMKVIDKqRGRLQRLLTEKKVLFLCSSPFVVTIFYAFEDMERLHLVMECLSS-DVKHLLQRRGVldethtvSLMADVTLALEHLHACGIVHRDLKPENMLLTyEGRVKLADFGLSHISERTAMSEKD 976
                 5555555667788888888889999725699***********999998888777777889999****9975.5677776665566777799*****************************6599************9887655555 PP

>> TIGR00229  sensory_box: PAS domain S-box protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0      0.35   4.8e+02      43      77 ..      47      81 ..      32     107 .. 0.86
   2 !   13.5   0.0   9.3e-06     0.013      27      55 ..     306     334 ..     301     394 .. 0.85
   3 ?   -2.8   0.0         1   1.4e+03      27      54 ..     449     476 ..     446     489 .. 0.84
   4 !    4.3   0.0    0.0065         9      59     108 ..     530     580 ..     514     586 .. 0.64

  Alignments for each domain:
  == domain 1    score: -1.3 bits;  conditional E-value: 0.35
   TIGR00229 43 eeliGrnvlelipeedreevrerierrlegerepv 77
                ++liG  ++ l++ +d ++v++ ++++ ege+  +
  MMETSP1137-20121227|5591_1 47 ADLIGCPLSALLSAHDANAVALSLQKIAEGEPLET 81
                7899999*****************99999886555 PP

  == domain 2    score: 13.5 bits;  conditional E-value: 9.3e-06
   TIGR00229  27 ilyvNrafeeifGYsaeeliGrnvlelip 55 
                 i +v+++fee++GYs+ eliG ++l l +
  MMETSP1137-20121227|5591_1 306 IWHVSEEFEELLGYSSHELIGGTALALRA 334
                 779******************98877654 PP

  == domain 3    score: -2.8 bits;  conditional E-value: 1
   TIGR00229  27 ilyvNrafeeifGYsaeeliGrnvleli 54 
                 i++++  f  + G s++e++ rn + l 
  MMETSP1137-20121227|5591_1 449 IVFASAGFGLMCGCSPAEVLHRNCRFLQ 476
                 78899999999*********99988765 PP

  == domain 4    score: 4.3 bits;  conditional E-value: 0.0065
   TIGR00229  59 reevrerierrlegerepvseerrvkrkdGseiwvevsvspird..aggelg 108
                 + +  + ++++l+ ++e +   +++ rkdGs++   +  +pi +   +g+l+
  MMETSP1137-20121227|5591_1 530 QTHALAHMSKTLDARQESMTFVTNF-RKDGSRFGNILFMTPILEhtTKGVLF 580
                 3333445677777666777777777.*******9999999998433444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1194 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        83  (0.020234); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.72u 0.17s 00:00:00.89 Elapsed: 00:00:00.80
# Mc/sec: 1969.94
//
Query:       MMETSP1137-20121227|5592_1  [L=413]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.1e-32  108.7   0.2    7.9e-31  105.2   0.0    2.3  2  TIGR02037 degP_htrA_DO: peptidase Do
    1.9e-14   51.4   0.0      5e-13   46.7   0.0    2.1  1  TIGR02038 protease_degS: periplasmic serine peptidase DegS


Domain annotation for each model (and alignments):
>> TIGR02037  degP_htrA_DO: peptidase Do
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  105.2   0.0   3.8e-34   7.9e-31      57     229 ..     131     330 ..     119     334 .. 0.87
   2 ?   -2.4   0.0      0.18   3.6e+02     340     394 ..     357     409 ..     339     412 .. 0.52

  Alignments for each domain:
  == domain 1    score: 105.2 bits;  conditional E-value: 3.8e-34
   TIGR02037  57 kveslGSGviisadg..yvlTNnHvvdgakeikvklsdg...refkaklvgk..DektDiAvlkieak..kklpvvklgdsdklrvGdlvlAiGnPfglgetVtaGivSAlgrs...glnked....................yeeFIQtDaaiNpGNSGGpLvnlkGeviGiNtaIlsksGgsvGig.FAiPinlvkkvveqllk 229
                 ++++ GSG+ is+dg  y lT +Hv +g  +i+v l ++   ++++ +lvg+  D++ D+A+lk+ ++  + lp ++l+dsd+lr+G + +A+G   gl  +V+ Gi S++g+    g+                           ++ tDaa   G SGGpL++ +G+v+GiNt +     +  Gig +Ai +n+++k +e+++ 
  MMETSP1137-20121227|5592_1 131 NSTAQGSGFAISHDGksYLLTSAHVAAGGFKISVSLPQDdfvTKYEXELVGRaaDSRIDLALLKLPEEaaELLPPLELADSDALRTGSFLIAMGHTSGLRGAVSLGILSGRGKAmtmGV---PaasgdeaqseekvgqestedKPLYLVTDAAFAGGMSGGPLLDHAGRVVGINTLVRP---ELRGIGnYAISSNVAMKAIEDIVA 330
                 67789*********668*******************85424479******9555***********76655889****************************************832222...234567788888999888665556******************************988...78888879***********99976 PP

  == domain 2    score: -2.4 bits;  conditional E-value: 0.18
   TIGR02037 340 sekkellglsvadlseeaakkkkskeekkgvvvtkvkkkspaakag..lkkgdvils 394
                 s++ +++gls ad +e++ +    +++ +g v+++ ++ ++a+++   l   d++++
  MMETSP1137-20121227|5592_1 357 STQLQAAGLSAADAEEAMLA---AHQTGRG-VIREFESVEEAEEMRakLAXADLLVE 409
                 35555666666666644433...2344455.66666666666554311556666655 PP

>> TIGR02038  protease_degS: periplasmic serine peptidase DegS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.7   0.0   2.4e-16     5e-13      79     247 ..     135     329 ..     112     333 .. 0.74

  Alignments for each domain:
  == domain 1    score: 46.7 bits;  conditional E-value: 2.4e-16
   TIGR02038  79 lGsGvimskeG..yiltnkhvikkadqivval.qdG..rvfeaelvGs..dsltdlavlkieadn...lptiPlnadrkpkvGdvvlaiGnPynlGqtitqGiisatGrn...gl.ssvGrqn................flqtdaainaGnsGGalvnsaGelvGintlsfqkaadeeaeGinfaiPiklaskilekli 247
                  GsG  +s++G  y+lt  hv +   +i v+l qd    ++e elvG   ds+ dla+lk+  +    lp + l  +   + G  ++a+G    l  +++ Gi+s  G++   g+  ++G  +                +l tdaa   G sGG l++ aG +vGintl   +     + G n+ai  ++a k +e ++
  MMETSP1137-20121227|5592_1 135 QGSGFAISHDGksYLLTSAHVAAGGFKISVSLpQDDfvTKYEXELVGRaaDSRIDLALLKLPEEAaelLPPLELADSDALRTGSFLIAMGHTSGLRGAVSLGILSGRGKAmtmGVpAASGDEAqseekvgqestedkplYLVTDAAFAGGMSGGPLLDHAGRVVGINTLVRPE---LRGIG-NYAISSNVAMKAIEDIV 329
                 5899999887766******************966653356899****5449*********95443225888888888999***************9999999999888742223332222211111112222244455599***************************97543...33333.67777777777666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (413 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        96  (0.0234032); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.33u 0.19s 00:00:00.52 Elapsed: 00:00:00.36
# Mc/sec: 1514.21
//
Query:       MMETSP1137-20121227|5593_1  [L=328]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.8e-10   36.0   0.0    9.8e-10   36.0   0.0    3.6  3  TIGR00601 rad23: UV excision repair protein Rad23


Domain annotation for each model (and alignments):
>> TIGR00601  rad23: UV excision repair protein Rad23
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.0   0.0   2.4e-13   9.8e-10      10      80 ..      13      80 ..       3     108 .. 0.73
   2 ?   -2.9   9.8      0.16   6.4e+02     253     315 ..     142     220 ..     118     249 .. 0.51
   3 ?   -4.7   4.5      0.54   2.2e+03      87     136 ..     250     301 ..     240     326 .. 0.55

  Alignments for each domain:
  == domain 1    score: 36.0 bits;  conditional E-value: 2.4e-13
   TIGR00601 10 qqkfkidlepd.etvkelKekiesekgkdayevaqqkLiyaGkiLsDdktvkeykikekdfvvvmvskkKav 80
                + +++i+le +  tv++lKe i+++ +   ++ aqq+Liy+Gk+L+D +tv  y+i e+  +  mv    a 
  MMETSP1137-20121227|5593_1 13 GATLSIELEGSsVTVLQLKELIAAQAD---VPPAQQRLIYSGKVLKDAETVGSYQILEGHTI-HMVRGXAAA 80
                56788988865169**********999...***************************98876.455443333 PP

  == domain 2    score: -2.9 bits;  conditional E-value: 0.16
   TIGR00601 253 rnqpqfqqlRqvvqqnPelLealLqqi......gkenP....qLlqqisqh...qEeFlqllnEpvee...legesdlv 315
                 +++p +qq+   + q+P++L +l q +      g  nP    q +qq++ +   q + +q++++p  +   l++ + ++
  MMETSP1137-20121227|5593_1 142 LQNPAMQQMATALMQDPQALMSLQQMMqstmggGGTNPaaymQHMQQVMSNptmQQAVMQMMQDPQMQqmmLQQIGSMH 220
                 4555555555555555555444333221112222234422223344444442222344555555544333333333333 PP

  == domain 3    score: -4.7 bits;  conditional E-value: 0.54
   TIGR00601  87 Paatpesaptptpsatpasvae..kksaaPasaveeessaeeeatatalese 136
                 P+atp + + p++  + + +++  ++ + Pa+  +    ++++++a+a ++e
  MMETSP1137-20121227|5593_1 250 PPATPVAGAPPAQPDFSSMLTNvlASMNQPAANLPAAGATPQAPAAPAVSPE 301
                 5555555444444222222222113445555555555555555555555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (328 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       247  (0.0602145); expected 82.0 (0.02)
Passed bias filter:                      143  (0.034861); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.32u 0.19s 00:00:00.51 Elapsed: 00:00:00.40
# Mc/sec: 1082.31
//
Query:       MMETSP1137-20121227|5595_1  [L=834]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        1.1    7.1   8.4       0.41    8.5   3.6    1.8  2  TIGR02205 septum_zipA: cell division protein ZipA
        1.7    6.4   6.9       0.28    9.0   2.1    1.6  2  TIGR03499 FlhF: flagellar biosynthesis protein FlhF


Domain annotation for each model (and alignments):
>> TIGR02205  septum_zipA: cell division protein ZipA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0      0.25   5.2e+02     244     256 ..      63      75 ..      10      86 .. 0.64
   2 ?    8.5   3.6    0.0002      0.41      70     129 ..     474     533 ..     459     573 .. 0.77

  Alignments for each domain:
  == domain 1    score: -1.7 bits;  conditional E-value: 0.25
   TIGR02205 244 qnfklMlkaaqkl 256
                 + +  M++aaq++
  MMETSP1137-20121227|5595_1  63 EQLAAMMRAAQHM 75 
                 3344555555555 PP

  == domain 2    score: 8.5 bits;  conditional E-value: 0.0002
   TIGR02205  70 eipqpseqkepsiseavdkerkksvedeeasvpaqpvqqqldlpqaekvaqqtvepreak 129
                 ei++ps+q+  s s+++ ++r +s+ +++ + +aq + q+ ++ qa+++aq+  +  + +
  MMETSP1137-20121227|5595_1 474 EISRPSQQHAHSTSHTQGQPRAQSQAQPHGQSQAQSQAQSQAQSQAQSQAQSMASYMASP 533
                 689999999999999999999999999999999888888888888888777766655544 PP

>> TIGR03499  FlhF: flagellar biosynthesis protein FlhF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.1      0.43   8.9e+02     100     127 ..      45      72 ..      20     128 .. 0.60
   2 ?    9.0   2.1   0.00014      0.28      64     149 ..     477     565 ..     441     575 .. 0.53

  Alignments for each domain:
  == domain 1    score: -2.5 bits;  conditional E-value: 0.43
   TIGR03499 100 qeaekkleeaeeelrkelkalkellekq 127
                 +  e+++ +++e l +++++l +++++ 
  MMETSP1137-20121227|5595_1  45 EDDEPEQLDSREVLYEKVEQLAAMMRAA 72 
                 2222222222333333333333333333 PP

  == domain 2    score: 9.0 bits;  conditional E-value: 0.00014
   TIGR03499  64 eeakkaleeaepkklskaeekeekekeaeekaaeaaqeaekkleeaeeelrkelka.lkellekqlselal..eeedperakllkklle 149
                 +++++ + ++++++ ++ +++++++  +++++++a+++a+ +++++++++ + +++ +++l  + +++++   +++++ ++++++  ++
  MMETSP1137-20121227|5595_1 477 RPSQQHAHSTSHTQGQPRAQSQAQPHGQSQAQSQAQSQAQSQAQSQAQSMASYMASpMRSLAANRIARARGahQRRTGAGRQVCNTAVA 565
                 33333333333333333334344444444444444444444444444555555544355555555555544677777777777776665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (834 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       153  (0.0372989); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                        20  (0.00487567); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.56u 0.15s 00:00:00.71 Elapsed: 00:00:00.91
# Mc/sec: 1209.66
//
Query:       MMETSP1137-20121227|5596_1  [L=523]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (523 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        96  (0.0234032); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.16s 00:00:00.50 Elapsed: 00:00:00.52
# Mc/sec: 1327.51
//
Query:       MMETSP1137-20121227|5597_1  [L=307]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (307 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       103  (0.0251097); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.17s 00:00:00.40 Elapsed: 00:00:00.39
# Mc/sec: 1038.99
//
Query:       MMETSP1137-20121227|5598_1  [L=446]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (446 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       100  (0.0243784); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.16s 00:00:00.46 Elapsed: 00:00:00.67
# Mc/sec: 878.61
//
Query:       MMETSP1137-20121227|5599_1  [L=548]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (548 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        53  (0.0129205); expected 82.0 (0.02)
Passed bias filter:                       44  (0.0107265); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.15s 00:00:00.51 Elapsed: 00:00:00.96
# Mc/sec: 753.44
//
Query:       MMETSP1137-20121227|5600_1  [L=441]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.8e-70  234.6  10.8    5.2e-70  234.1   7.5    1.1  1  TIGR00817 tpt: Tpt phosphate/phosphoenolpyruvate translocator


Domain annotation for each model (and alignments):
>> TIGR00817  tpt: Tpt phosphate/phosphoenolpyruvate translocator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  234.1   7.5   1.3e-73   5.2e-70       1     297 [.     114     411 ..     114     417 .. 0.96

  Alignments for each domain:
  == domain 1    score: 234.1 bits;  conditional E-value: 1.3e-73
   TIGR00817   1 lqtgllfllwyvlnvyFnivnkkllklfhypvlktlvslavgvllellswssilkkrlkiskallklllpvaivhtighvtsnvslskvavSfthtikalepifsvvlskfflgrefpltlylsLlpivlGvalasltelsfnllgflsamisniefvarnifsKkiltkk...sldklnlyalisililfllspiafiveglklltreflqaiskvnvlklvtvslvaalgifHlyqqvafqllervspltysvgNvlKRvvvIvvSilffetkisflqvlGvilaiaGvflYskvkak 297
                 l++g++f++w  l  ++ni nk  l+++  p+  + +slavg+l +   w+++  k++k+sk  + +llp+a++h igh+ + vs ++ avSft ++ka ep+f+ +ls+++lg  +  ++  sL+piv+Gvalas+ elsf +l+f  am+sn++f arnifs+  + k    ++   nl+ +++++++ + +p a+++eg++  +  ++ a+ kv   +++  ++   l  f ly+ va+  l++v p+t++v+N++KRvv++ + +++f+t+++++  lG ++ai+G + Ys  k+ 
  MMETSP1137-20121227|5600_1 114 LKIGIYFAMWFGLSTGYNIANKVRLNALALPWCHSAASLAVGSLFVSTLWATGARKAPKLSKDAILTLLPIAFCHSIGHIGAVVSAGAGAVSFTQIVKASEPVFTCGLSALLLGVRVSPMVAASLVPIVFGVALASVSELSFTWLSFAGAMLSNLAFAARNIFSRVSMDKPkgeNMTPENLFGVLTVMSFCFALPLALAIEGPRAAA-MWAAATTKVAPAHIYRYTVSTGL-YFYLYNEVAMLALNNVHPVTHAVANTIKRVVILLACVIIFRTPMTPVCMLGSAIAIIGSYFYSMAKSL 411
                 789******************999******************************************************************************************999989999******************************************99985477799999*************************998.9**************88888888.99*************************************************************99986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (441 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       176  (0.0429059); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.31u 0.12s 00:00:00.43 Elapsed: 00:00:00.43
# Mc/sec: 1353.66
//
Query:       MMETSP1137-20121227|5601_1  [L=631]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     2e-295  978.4   1.2   2.2e-295  978.2   0.8    1.0  1  TIGR01816 sdhA_forward: succinate dehydrogenase, flavoprotein subunit
   5.3e-235  779.0   0.2   5.9e-235  778.9   0.2    1.0  1  TIGR01812 sdhA_frdA_Gneg: succinate dehydrogenase or fumarate reductase, flavoprotein subunit
   6.5e-138  458.7   1.5     8e-138  458.4   1.1    1.1  1  TIGR01176 fum_red_Fp: fumarate reductase, flavoprotein subunit
    4.6e-98  326.8   0.2    5.5e-98  326.6   0.1    1.0  1  TIGR00551 nadB: L-aspartate oxidase
    1.9e-90  302.1   0.2    2.7e-90  301.6   0.2    1.2  1  TIGR01811 sdhA_Bsu: succinate dehydrogenase or fumarate reductase, flavoprotein subunit
    7.4e-44  148.0   0.1    3.7e-24   83.1   0.0    2.5  2  TIGR01813 flavo_cyto_c: flavocytochrome c
    2.4e-06   24.8   0.2    0.00029   18.0   0.0    2.4  2  TIGR00292 TIGR00292: thiazole biosynthesis enzyme
    5.2e-05   20.9   0.1     0.0004   18.0   0.1    2.1  2  TIGR02032 GG-red-SF: geranylgeranyl reductase family
    0.00082   16.0   0.2     0.0014   15.2   0.1    1.3  1  TIGR01350 lipoamide_DH: dihydrolipoyl dehydrogenase
     0.0019   14.9   0.0     0.0033   14.0   0.0    1.4  1  TIGR01377 soxA_mon: sarcosine oxidase, monomeric form
     0.0023   14.4   2.0     0.0055   13.1   0.2    2.2  3  TIGR03140 AhpF: alkyl hydroperoxide reductase, F subunit
      0.004   13.4   0.2      0.011   11.9   0.2    1.6  2  TIGR00136 gidA: tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
     0.0048   13.6   0.3      0.089    9.4   0.1    2.6  3  TIGR01292 TRX_reduct: thioredoxin-disulfide reductase
     0.0092   12.8   0.5      0.015   12.1   0.4    1.3  1  TIGR03378 glycerol3P_GlpB: glycerol-3-phosphate dehydrogenase, anaerobic, B subunit
  ------ inclusion threshold ------
       0.01   12.5   0.1      0.018   11.7   0.1    1.3  1  TIGR01373 soxB: sarcosine oxidase, beta subunit family
      0.024   11.8   2.1      0.038   11.1   1.5    1.3  1  TIGR03467 HpnE: squalene-associated FAD-dependent desaturase
      0.026   11.0   0.7       0.04   10.4   0.5    1.2  1  TIGR02734 crtI_fam: phytoene desaturase
      0.044   10.7   0.8      0.075    9.9   0.6    1.3  1  TIGR02352 thiamin_ThiO: glycine oxidase ThiO
       0.39    7.3   5.2        1.9    5.0   0.7    2.8  3  TIGR00275 TIGR00275: flavoprotein, HI0933 family


Domain annotation for each model (and alignments):
>> TIGR01816  sdhA_forward: succinate dehydrogenase, flavoprotein subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  978.2   0.8    1e-297  2.2e-295       1     584 []      42     631 .]      42     631 .] 0.99

  Alignments for each domain:
  == domain 1    score: 978.2 bits;  conditional E-value: 1e-297
   TIGR01816   1 hkfdvvvvGaGGaGlraalelakeglktavvtklfPtrshtvaaqGGisaalgnveeddwewhlydtvkGsdylgdqdaieymckeapeavlelekmGlPfsrteeGkiyqrkfGGqtkdfGka.averacaaadrtGhallhtlyqqslkadtsffveyfaldlile.dgevrGvialeletGeihvfrakavvlatGGaGriyasttnaltltGdgvgivlraGlPlqdlefvqfhPtGiagaGvlitegvrGeGGillnaeGerfmeryaPtikdlasrdvvarsmvleireGrGvGkekdhvylkldhlgeevleeklpgiselaktfagvdpvkdpipvlPtvhylmGGiptnlkGqvlr.dadgndsiveGlyavGeaacvsvhGanrlGtnslldlvvfGraaglslaelikegsdvkelkenaeeesvkrldklraaegkervaelrkelqksmqnhvavfrteevlkkgvekiselkerlkrvkvkdkskvfntdlvealeldnllevaeatvvsaearkesrGaharedykerddenwlkhtlaykdigagkvllsykevalktlteaale...Pkkrvy 584
                 h++d+vvvGaGGaGlraa++la++g+kta+vtklfPtrshtvaaqGGi+aalgn+ eddw+wh+ydtvkGsd+lgdqdai+ymckeap +v+ele++G+Pfsrt+eGkiyqr+fGGq+ ++Gk+ ++ r+ +aadrtGha+lhtly+q++++dt+ff+eyfaldli++  g+++G++al++e+G++h+f++k++v+atGG+Gr++ s+t+a+t+tGdg ++v+raGlPlqdlefvqfhPtGi+gaG+liteg+rGeGGil+n+eGerfmeryaPt+kdlasrdvv+rsm++ei eGrG+G++kdhvyl l+hl++evl+e+lpgise+a +fagvd++k+pipvlPtvhy+mGGiptn  G+v+r  a + d+iv Gl+a+Gea+c svhGanrlG+nslld+vvfGraa+l++ e++k+g+ +k+l++ a+ee++ ++d lr++eg++ +a++r+elqk mq+h+avfr++++l++g++ki ++   +k+vkv+dks+++ntdlve+lel+nll +  +t++saear+esrGahar+dy++r+d++w+khtl+y+ + + kv+l+y++v+  tl e++++   P+ rvy
  MMETSP1137-20121227|5601_1  42 HEYDAVVVGAGGAGLRAAFGLANQGFKTACVTKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIHYMCKEAPRTVIELEHYGVPFSRTDEGKIYQRAFGGQSLHYGKGgQAYRCACAADRTGHAMLHTLYGQAVRHDTEFFIEYFALDLIMDdAGDCVGIMALCMEDGSLHRFKCKNTVIATGGYGRAWWSATSAHTCTGDGNAMVARAGLPLQDLEFVQFHPTGIYGAGCLITEGARGEGGILRNSEGERFMERYAPTAKDLASRDVVSRSMTMEINEGRGCGPNKDHVYLYLNHLPPEVLAERLPGISETAAIFAGVDVTKEPIPVLPTVHYNMGGIPTNRYGEVIRpTASDPDAIVGGLFAAGEASCSSVHGANRLGANSLLDIVVFGRAAALRIGEIAKPGDTLKDLPKGAGEETIANIDFLRTNEGTKSTASIRNELQKVMQTHAAVFRVQDLLAEGCTKIDDVCASIKDVKVTDKSMIWNTDLVETLELQNLLVQGAQTMYSAEARTESRGAHARDDYQTRNDKEWMKHTLSYMAKPTDKVKLDYRPVHYYTLDEEECAtvaPVARVY 631
                 89**************************************************************************************************************************9******************************************96699*************************************************************************************************************************************************************************************************9999***************************************************************************************************************************************************************************************************************99887777999998 PP

>> TIGR01812  sdhA_frdA_Gneg: succinate dehydrogenase or fumarate reductase, flavoprotein subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  778.9   0.2  2.7e-237  5.9e-235       1     567 [.      45     630 ..      45     631 .] 0.97

  Alignments for each domain:
  == domain 1    score: 778.9 bits;  conditional E-value: 2.7e-237
   TIGR01812   1 DvvivGaGlAGlraAveaakkglkvaviskvyptRsHsvaAqGGiaaalanvddddsvelhayDtvkGsDyladqdavellvkeapeavlelekmGvpfsRledgriaqRpFGgaske........RtcyaaDktGhallhtlyeellklgveifeeyfvldlile.dkevkGvvaidlktgevvvlrakavvlatGGagrvyktttnavivtGdGlaialragvplkdmEfvqfHPtglaksgiLitEgaRGeGgyLvnkeGeRfmeryaPeklelapRDvvsralvteireGrgveseakdyvyldlrhlgeekieerlpqirelakkfagvDpvkeliPvrPtaHYsmGGietdkkGevile....nesivkGlfaaGEaacvsvHGanRLGsnsllelvvfGriagealaeavkkakvdeakleeeavkkeekllellkeeekgeeevakireelketmednvgvfRdeellkkavkeleelkekkkkvkikdkskvfntdllealelknllelaevvaasAlnRkEsRGaHaReDypeRdDenwlkhtlaslee..gkkkleykavkitkle........pkeRk 567
                 D+v+vGaG+AGlraA+ +a++g+k+a+++k++ptRsH+vaAqGGi+aal+n+  +d++++h+yDtvkGsD+l+dqda+++++keap +v+ele++GvpfsR+++g+i+qR+FGg+s +        R+  aaD+tGha+lhtly +++++++e+f eyf+ldli++  + + G++a+++++g+++ ++ k++v+atGG+gr ++++t+a+++tGdG a+++rag+pl+d+EfvqfHPtg++++g+LitEgaRGeGg+L+n+eGeRfmeryaP++++la+RDvvsr++++ei eGrg + ++kd+vyl l+hl  e++ erlp i+e+a  fagvD++ke+iPv+Pt+HY+mGGi+t+ +Gevi+      + iv GlfaaGEa+c svHGanRLG+nsll++vvfGr+a+ ++ e + k +   ++l + a +++ ++++ l++ ++g++++a+ir+el+++m+ +++vfR ++ll ++++++ ++    k+vk++dks ++ntdl+e+lel+nll ++  +++sA +R+EsRGaHaR Dy++R+D++w+khtl+++ +  +k+kl+y++v+  +l+        p +R+
  MMETSP1137-20121227|5601_1  45 DAVVVGAGGAGLRAAFGLANQGFKTACVTKLFPTRSHTVAAQGGINAALGNMT-EDDWRWHMYDTVKGSDWLGDQDAIHYMCKEAPRTVIELEHYGVPFSRTDEGKIYQRAFGGQSLHygkggqayRCACAADRTGHAMLHTLYGQAVRHDTEFFIEYFALDLIMDdAGDCVGIMALCMEDGSLHRFKCKNTVIATGGYGRAWWSATSAHTCTGDGNAMVARAGLPLQDLEFVQFHPTGIYGAGCLITEGARGEGGILRNSEGERFMERYAPTAKDLASRDVVSRSMTMEINEGRGCG-PNKDHVYLYLNHLPPEVLAERLPGISETAAIFAGVDVTKEPIPVLPTVHYNMGGIPTNRYGEVIRPtasdPDAIVGGLFAAGEASCSSVHGANRLGANSLLDIVVFGRAAALRIGEIA-KPGDTLKDLPKGAGEETIANIDFLRT-NEGTKSTASIRNELQKVMQTHAAVFRVQDLLAEGCTKIDDVCASIKDVKVTDKSMIWNTDLVETLELQNLLVQGAQTMYSAEARTESRGAHARDDYQTRNDKEWMKHTLSYMAKptDKVKLDYRPVHYYTLDeeecatvaPVARV 630
                 89***************************************************.9**************************************************************99***********************************************6789********************************************************************************************************************************.677************************************************************98755445789*****************************************999.7888899*******************.5599************************************************************************************************************999999********9988875555555555555 PP

>> TIGR01176  fum_red_Fp: fumarate reductase, flavoprotein subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  458.4   1.1  3.7e-140    8e-138       4     572 ..      44     616 ..      41     631 .] 0.90

  Alignments for each domain:
  == domain 1    score: 458.4 bits;  conditional E-value: 3.7e-140
   TIGR01176   4 adiavigaggaglraaiaaaeanphlevaliskvypmrshtvaaeggsaavikd..edsldehfhdtvaggdwlceqdvveyfvaeapkelvqlekwgcpwsrkedgevnvrrfggm........kvertwfaadktgfhllhtlfqtslkysqikrldeyfvvdllvdd.grvrglvaielaegelvtikadavvlatggagrvyrfntnggivtgdgmalalragvplrdmefvqyhptglpgtgilltegargeggilvnkdgyrylqdyglgketplgepknkymelgprdkvsqafvheqrkgntidtplgdvvyldlrhlgeellderlpficelakayvnvdpvkelipvrpvvhytmggietdince..........trikglfavgecasvglhganrlgsnslaelvvfgrlagekaaeraaeakksnesaieaqakavedrleallsqeggeniakiraemgatleegagiyrdeellqktidklaelkerfkrvsikdkskvfntdllylielgygldvaealvesalarkesrgahqrldegcterddvqflkhtlafree.dgtlrveyspvkitkl 572
                  d +v+gaggaglraa   a  n   + a ++k++p rshtvaa+gg  a  ++  ed    h+ dtv g dwl +qd+++y+ +eap+ +++le++g p+sr ++g++  r fgg         +  r   aad+tg  +lhtl+ +++++ + + + eyf++dl++dd g+  g++a+ + +g l + k +  v+atgg gr +  +t +   tgdg a+  rag pl+d+efvq+hptg+ g+g l+tegargeggil n +g r+++ y    +t          +l  rd vs+++  e + g+    p  d vyl l hl  e l erlp i e a  + +vd +ke+ipv p+vhy mggi t+  +e          + + glfa+ge+++ ++hganrlg+nsl ++vvfgr a  +  e a   +  ++    a  +++   ++ l  +eg +  a+ir+e+++ +++ a ++r ++ll +   k+ ++    k v+++dks ++ntdl+ ++el + l      + sa ar esrgah r d     r+d++++khtl +  +  + ++++y pv+  +l
  MMETSP1137-20121227|5601_1  44 YDAVVVGAGGAGLRAAFGLA--NQGFKTACVTKLFPTRSHTVAAQGGINAALGNmtEDDWRWHMYDTVKGSDWLGDQDAIHYMCKEAPRTVIELEHYGVPFSRTDEGKIYQRAFGGQslhygkggQAYRCACAADRTGHAMLHTLYGQAVRH-DTEFFIEYFALDLIMDDaGDCVGIMALCMEDGSLHRFKCKNTVIATGGYGRAWWSATSAHTCTGDGNAMVARAGLPLQDLEFVQFHPTGIYGAGCLITEGARGEGGILRNSEGERFMERYA---PTA--------KDLASRDVVSRSMTMEINEGRGC-GPNKDHVYLYLNHLPPEVLAERLPGISETAAIFAGVDVTKEPIPVLPTVHYNMGGIPTNRYGEvirptasdpdAIVGGLFAAGEASCSSVHGANRLGANSLLDIVVFGRAAALRIGEIAKPGDTLKDLPKGAGEETI-ANIDFLRTNEGTKSTASIRNELQKVMQTHAAVFRVQDLLAEGCTKIDDVCASIKDVKVTDKSMIWNTDLVETLELQNLLVQGAQTMYSAEARTESRGAHARDDY--QTRNDKEWMKHTLSYMAKpTDKVKLDYRPVHYYTL 616
                 5889***********99886..77899********************877665333999********************************************************9722222222457999******************997.6899*********9987689*************************************************************************************************9994...333........4899*****************98.6999******************************************************9877622222222214588***********************************9999998877777776666666655.46899999********************************************************************99988888889****************9..99************9876257899*****987655 PP

>> TIGR00551  nadB: L-aspartate oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  326.6   0.1  2.6e-100   5.5e-98       2     488 ..      43     581 ..      42     582 .. 0.86

  Alignments for each domain:
  == domain 1    score: 326.6 bits;  conditional E-value: 2.6e-100
   TIGR00551   2 eadvvviGsGaagLsaalalaekyr.vvvlskaevkesasvyaqgGiaaal..aetDsidahveDtlaaGaglcdeeavesvvsdakeavqeLveaGvsfdrneqgslaltregghs........rrRilhaadatGrevistLlkkakaepkveilerevaldllie.tgrvvGvlvves..etvevlhakavvlatGGlgklyaattnpkvstGdgialalraGvevrdleFvqFhPtalvkkrvrrfLiteavRGeGaiLvdrdGkrfvadvhprG.eLapRDivaraideelkkt.....ekdcvflDlsaiea..iksrFPtitaklr.kaGidierepiPvvPaahytiGGisvdaygr....te......vkGLYaiGevastGlhGanRlasnsLLeclvfGasaaraisr..kklaa....sdesssavedev.rleteddraelqrkvselrsllweaagivrlaesLeealaklkelkeevdel................lelrnLlqvaklvvasallReesRGahyrldy 488
                 e d vv+G+G agL aa  la++++  + ++k   + s +v aqgGi aal    +D  + h+ Dt++    l d++a++ + ++a+++v eL + Gv+f r  +g++     gg s          R   aad tG+++ +tL ++a  + + e++ + +aldl+++  g +vG++      ++++ ++ k+ v+atGG g+ +   t  ++ tGdg a+++raG +++dleFvqFhPt ++  +    Lite  RGeG+iL + +G+rf+  + p   +La+RD+v+r + +e++++     +kd v+l l++ ++  +++r P i ++    aG+d+++epiPv P++hy +GGi +++yg+    t       v GL+a+Ge++++ +hGanRl +nsLL+ +vfG  aa  i +  k+  +     +   ++++ ++ +l t++  +   + ++el+++++ +a++ r ++ L e+ +k+ ++  +++++                lel+nLl      + sa +R+esRGah r dy
  MMETSP1137-20121227|5601_1  43 EYDAVVVGAGGAGLRAAFGLANQGFkTACVTKLFPTRSHTVAAQGGINAALgnMTEDDWRWHMYDTVKGSDWLGDQDAIHYMCKEAPRTVIELEHYGVPFSRTDEGKIYQRAFGGQSlhygkggqAYRCACAADRTGHAMLHTLYGQAV-RHDTEFFIEYFALDLIMDdAGDCVGIMALCMedGSLHRFKCKNTVIATGGYGRAWWSATSAHTCTGDGNAMVARAGLPLQDLEFVQFHPTGIYGAGC---LITEGARGEGGILRNSEGERFMERYAPTAkDLASRDVVSRSMTMEINEGrgcgpNKDHVYLYLNHLPPevLAERLPGISETAAiFAGVDVTKEPIPVLPTVHYNMGGIPTNRYGEvirpTAsdpdaiVGGLFAAGEASCSSVHGANRLGANSLLDIVVFGRAAALRIGEiaKPGDTlkdlPKGAGEETIANIdFLRTNEGTKSTASIRNELQKVMQTHAAVFRVQDLLAEGCTKIDDVCASIKDVkvtdksmiwntdlvetLELQNLLVQGAQTMYSAEARTESRGAHARDDY 581
                 6799*******************9989********************99983345899***********************************************95544444444421111111469999*****************9.8999*************9679*****9765434899**********************************************************998...**************************97549****************98333334679******999888********99765279***************************9744442133444489********************************999887541122222212211222333333314555556677889999**********************************999********************9877777789***************99 PP

>> TIGR01811  sdhA_Bsu: succinate dehydrogenase or fumarate reductase, flavoprotein subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  301.6   0.2   1.2e-92   2.7e-90       2     595 ..      47     615 ..      46     621 .. 0.91

  Alignments for each domain:
  == domain 1    score: 301.6 bits;  conditional E-value: 1.2e-92
   TIGR01811   2 ivvGtGlaGlsaaiklaelGydvklfsyqdavrrahsiaaqGGinaaknkkndgdsvyrlfddtvkGGdfraresnvkrlaeasveiidlldalGvpfareygGlldtrsfGGv........qvsrtfyargqtGqqlllaldealrrqiaaGlvelyerrelldiivvdedrarGivarnlvtgeletfsadavilatGGygnvfylstnamnsnasavarayekGayfanpefiqihPtaiPvdgefqskltlmseslrndGriWvpkeksddrdankipedkrdyflerkyPafGnlvPrdiasraikevcdegkgvgngenavyldlsdaierlgrkeleakygnlfeiyekivgddPykvPmkifPavhytmGGlwvd.y.........demttvpGlfaaGeadfsd.hGanrlGansllsalvdGlvvlPatienylgleksaedldedapvfekalaeeqerldkllkvdGkenadklhrelGeiltesvgvsreeekllkalekieelreefkkridiegtakesnqalekaarvedylelaelivldaldrnescGahfreefqtedgeaerndeeflyvaaaefkgendapelhkeeldvel 595
                 +vvG+G aGl aa  la++G++    +    + r+h++aaqGGinaa ++ +++d  + +++dtvkG d+++ +  ++ +++++++ +  l+  Gvpf+r+ +G + +r fGG         q  r + a  +tG  +l +l+ +  r+ ++  +e ++    ld+i++d + + Gi+a  +  g l++f+++  ++atGGyg  +  +t a + ++   a + ++G    + ef+q+hPt+i +         l++e +r++G i                e++   f+er  P+  +l  rd+ sr ++  ++eg+g g+ ++ vyl l++  +    + l +++ ++ e    + g d  k P+ + P+vhy mGG+ ++ y         d  + v GlfaaGea+ s  hGanrlGansll+ +v G  +    i ++     + +dl++       a +e+ + +d l +++G++++ ++  el +++ ++ +v r ++ l ++  ki ++ +  k+ +++++ +   n  l  +  ++++l  +   +  a  r es+Gah r+++q       rnd+e+++ +   +   +d+ +l++ ++++ +
  MMETSP1137-20121227|5601_1  47 VVVGAGGAGLRAAFGLANQGFKTACVTKLF-PTRSHTVAAQGGINAALGNMTEDDWRW-HMYDTVKGSDWLGDQDAIHYMCKEAPRTVIELEHYGVPFSRTDEGKIYQRAFGGQslhygkggQAYRCACAADRTGHAMLHTLYGQAVRHDTEFFIEYFA----LDLIMDDAGDCVGIMALCMEDGSLHRFKCKNTVIATGGYGRAWWSATSAHTCTGDGNAMVARAGLPLQDLEFVQFHPTGIYGA------GCLITEGARGEGGILRNS------------EGE--RFMERYAPTAKDLASRDVVSRSMTMEINEGRGCGPNKDHVYLYLNHLPP----EVLAERLPGISETAAIFAGVDVTKEPIPVLPTVHYNMGGIPTNrYgevirptasDPDAIVGGLFAAGEASCSSvHGANRLGANSLLDIVVFGRAA-ALRIGEIAKPGDTLKDLPKG------AGEETIANIDFLRTNEGTKSTASIRNELQKVMQTHAAVFRVQDLLAEGCTKIDDVCASIKD-VKVTDKSMIWNTDLVETLELQNLLVQGAQTMYSAEARTESRGAHARDDYQ------TRNDKEWMKHTLSYMAKPTDKVKLDYRPVHYYT 615
                 79*******************999888776.9*********************99998.899**************************************************86222222336679999*********************999999886....9********************************************************************************99......689**********97665............555..59********************************************999....99**************************************875452112222113445699********98644*************99999865.46688888777777777766......66778889***************************************************99.**************************************************......9**********9999999999999999887765 PP

>> TIGR01813  flavo_cyto_c: flavocytochrome c
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.1   0.0   1.7e-26   3.7e-24       1     277 [.      45     314 ..      45     343 .. 0.83
   2 !   62.2   0.0   3.7e-20   8.1e-18     380     443 ..     385     452 ..     376     453 .. 0.87

  Alignments for each domain:
  == domain 1    score: 83.1 bits;  conditional E-value: 1.7e-26
   TIGR01813   1 dvvvvGsGlAGlsaaleakkaglaevvvleKapviGGNsaiaaggmnaaktkiQkkkgieDskelfikdtlkggrgindpelvkklaeesadavdwlkd.evklkldk...laq..lGGhsvk........RahrpkggaasGaeivqklskkakkegvelrlnskvedlikddqgqvtGvkvke.kgkkikikaakaVvlatGGfgsnkelikkydPelkelestnqkgatgdglkvlekigaalvdldeiQahptaspdegkfliaealrglgailvnpkdGeRFvnEla 277
                 d vvvG+G+AGl aa+ + ++g  +   + K   +   ++ a gg+naa  ++      eD   + + dt+kg++  +d++ ++++ +e+ ++v  l++ +v ++ ++   + q  +GG+s +        R   +++  ++G  + ++l+ +a   + e+ ++  + dli+dd g  +G+ +   ++++++  + k+ v+atGG+g+               ++t +++ tgdg  ++ ++g  l dl+++Q hpt+     + li+e +rg g+il n  +GeRF++  a
  MMETSP1137-20121227|5601_1  45 DAVVVGAGGAGLRAAFGLANQG-FKTACVTKLFPTRSHTVAAQGGINAALGNM-----TEDDWRWHMYDTVKGSDWLGDQDAIHYMCKEAPRTVIELEHyGVPFSRTDegkIYQraFGGQSLHygkggqayRCACAAD--RTGHAMLHTLYGQAVRHDTEFFIEYFALDLIMDDAGDCVGIMALCmEDGSLHRFKCKNTVIATGGYGR------------AWWSATSAHTCTGDGNAMVARAGLPLQDLEFVQFHPTGIYGA-GCLITEGARGEGGILRN-SEGERFMERYA 314
                 579*******************.5556667888888999**********9887.....579999**************************999999988888887654122332338999864333331114444555..9****************************************875438889999**************9............347899**********************************97.9****************.*******8543 PP

  == domain 2    score: 62.2 bits;  conditional E-value: 3.7e-20
   TIGR01813 380 vtPkvHytmGGvkintkaeVldensekp...ikgLfAaGEvtG.gvHGanRLggnaildiivfGriaa 443
                 v P+vHy mGG+ +n   eV++     p   + gLfAaGE++   vHGanRLg+n++ldi+vfGr aa
  MMETSP1137-20121227|5601_1 385 VLPTVHYNMGGIPTNRYGEVIRPTASDPdaiVGGLFAAGEASCsSVHGANRLGANSLLDIVVFGRAAA 452
                 88*******************976654433266********8637********************997 PP

>> TIGR00292  TIGR00292: thiazole biosynthesis enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.0   1.3e-06   0.00029      20      50 ..      42      72 ..      23      91 .. 0.78
   2 ?    4.3   0.0      0.02       4.3     207     234 ..     411     439 ..     395     458 .. 0.76

  Alignments for each domain:
  == domain 1    score: 18.0 bits;  conditional E-value: 1.3e-06
   TIGR00292 20 aesDviivGaGpsGLtaayylakeglkvvvl 50
                 e D ++vGaG +GL aa+ la++g+k++ +
  MMETSP1137-20121227|5601_1 42 HEYDAVVVGAGGAGLRAAFGLANQGFKTACV 72
                478************************9876 PP

  == domain 2    score: 4.3 bits;  conditional E-value: 0.02
   TIGR00292 207 ntrevvdnlyvaGmav.aavdglnrmGpi 234
                 +  ++v +l++aG a+ + v+g+nr+G+ 
  MMETSP1137-20121227|5601_1 411 DPDAIVGGLFAAGEAScSSVHGANRLGAN 439
                 557899*******9873679*******84 PP

>> TIGR02032  GG-red-SF: geranylgeranyl reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.1   1.8e-06    0.0004       1      31 [.      44      74 ..      44     111 .. 0.91
   2 ?    0.1   0.0      0.52   1.1e+02      95     150 ..     184     244 ..     165     250 .. 0.80

  Alignments for each domain:
  == domain 1    score: 18.0 bits;  conditional E-value: 1.8e-06
   TIGR02032  1 yDvvvvGaGpaGssaAlrlakkGlrVlllek 31
                yD vvvGaG aG  aA  la++G++++ + k
  MMETSP1137-20121227|5601_1 44 YDAVVVGAGGAGLRAAFGLANQGFKTACVTK 74
                9************************998765 PP

  == domain 2    score: 0.1 bits;  conditional E-value: 0.52
   TIGR02032  95 elLaekAqeagaelllettvlsveied.....ekvkvevredekkevtakivigAdGaksk 150
                 + L  +A ++  e+++e  +l+ + +d         + +++++ + +++k  ++A+G +++
  MMETSP1137-20121227|5601_1 184 HTLYGQAVRHDTEFFIEYFALDLIMDDagdcvGIMALCMEDGSLHRFKCKNTVIATGGYGR 244
                 678889999999999999999988888877633333344555999***********98775 PP

>> TIGR01350  lipoamide_DH: dihydrolipoyl dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.1   6.5e-06    0.0014       1      32 [.      43      74 ..      43      77 .. 0.95

  Alignments for each domain:
  == domain 1    score: 15.2 bits;  conditional E-value: 6.5e-06
   TIGR01350  1 eydvvviGgGpgGYvaAiraaqlglkvalvek 32
                eyd vv+G+G +G  aA   a++g+k+a+v k
  MMETSP1137-20121227|5601_1 43 EYDAVVVGAGGAGLRAAFGLANQGFKTACVTK 74
                69***************************987 PP

>> TIGR01377  soxA_mon: sarcosine oxidase, monomeric form
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.0   1.5e-05    0.0033       1      37 [.      44      80 ..      44     106 .. 0.90

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 1.5e-05
   TIGR01377  1 fDvivvGaGvmGsaaayqLakrgkkvLLleqfdlphs 37
                +D++vvGaG  G  aa+ La +g k+  + ++++  s
  MMETSP1137-20121227|5601_1 44 YDAVVVGAGGAGLRAAFGLANQGFKTACVTKLFPTRS 80
                8*************************99999887644 PP

>> TIGR03140  AhpF: alkyl hydroperoxide reductase, F subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.1   0.2   2.5e-05    0.0055     194     243 ..      28      74 ..      15      89 .. 0.78
   2 ?   -0.4   0.0      0.31        67     447     487 ..     384     426 ..     370     431 .. 0.77
   3 ?   -3.7   0.0       3.2   6.8e+02     167     219 ..     502     559 ..     492     568 .. 0.59

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 2.5e-05
   TIGR03140 194 kleekaaekaeeaeeekekydvlvvGgGPagaaaaiyaarkGlkvalvae 243
                 k+++ +   a++ +   ++yd +vvG+G ag  aa   a +G k+a v++
  MMETSP1137-20121227|5601_1  28 KISQAT---ADKYKVIDHEYDAVVVGAGGAGLRAAFGLANQGFKTACVTK 74 
                 444443...3333444568****************************987 PP

  == domain 2    score: -0.4 bits;  conditional E-value: 0.31
   TIGR03140 447 GlvpnteflkdavelnrrGeividergrts..vkGifaaGdvt 487
                  ++p  ++  + + +nr Ge++  + ++ +  v G+faaG+++
  MMETSP1137-20121227|5601_1 384 PVLPTVHYNMGGIPTNRYGEVIRPTASDPDaiVGGLFAAGEAS 426
                 567777788888999******9877665542278******986 PP

  == domain 3    score: -3.7 bits;  conditional E-value: 3.2
   TIGR03140 167 kiqavPavflngeefanGridlaellekleekaaek.....aeeaeeekekydvlvvG 219
                  +q+  avf  ++ +a+G +++ ++ + +++   ++     +++  e++e +++lv G
  MMETSP1137-20121227|5601_1 502 VMQTHAAVFRVQDLLAEGCTKIDDVCASIKDVKVTDksmiwNTDLVETLELQNLLVQG 559
                 4455566777777777777777777777665443333444444555555666666655 PP

>> TIGR00136  gidA: tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.9   0.2     5e-05     0.011       1      32 [.      44      75 ..      44      99 .. 0.83
   2 ?   -2.1   0.0      0.89   1.9e+02     117     156 ..     201     245 ..     180     261 .. 0.79

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 5e-05
   TIGR00136  1 fdviviGaGhaGieaalaaarlgaktllltln 32
                +d +v+GaG aG+ aa+  a +g+kt  +t+ 
  MMETSP1137-20121227|5601_1 44 YDAVVVGAGGAGLRAAFGLANQGFKTACVTKL 75
                689***********************999875 PP

  == domain 2    score: -2.1 bits;  conditional E-value: 0.89
   TIGR00136 117 eevedliledndevkGvv...tkdga..klrakavilttGtfLkg 156
                   + dli++d   + G++   ++dg+  ++++k+ +++tG + ++
  MMETSP1137-20121227|5601_1 201 YFALDLIMDDAGDCVGIMalcMEDGSlhRFKCKNTVIATGGYGRA 245
                 5678999999999999863325777533789999******99665 PP

>> TIGR01292  TRX_reduct: thioredoxin-disulfide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.4   0.1   0.00041     0.089       1      34 [.      44      77 ..      44      87 .. 0.89
   2 ?    0.8   0.0      0.17        36      55     113 ..     178     244 ..     173     261 .. 0.66
   3 ?   -3.4   0.0       3.2   6.8e+02     263     277 ..     414     428 ..     401     432 .. 0.77

  Alignments for each domain:
  == domain 1    score: 9.4 bits;  conditional E-value: 0.00041
   TIGR01292  1 ydviiiGaGpaGltaaiYaaranlktlliegkea 34
                yd +++GaG aGl aa   a +++kt+++++  +
  MMETSP1137-20121227|5601_1 44 YDAVVVGAGGAGLRAAFGLANQGFKTACVTKLFP 77
                799************************9998655 PP

  == domain 2    score: 0.8 bits;  conditional E-value: 0.17
   TIGR01292  55 sgselmekmkeqakkfgaeiileevk....kvdkker..pfkvlte..dekeykakaviiAtGakar 113
                 +g+ ++++++ qa++ ++e+++e  +      d  ++  ++ + +e  + + +k+k  +iAtG   r
  MMETSP1137-20121227|5601_1 178 TGHAMLHTLYGQAVRHDTEFFIEYFAldliMDDAGDCvgIMALCMEdgSLHRFKCKNTVIATGGYGR 244
                 577777778888888887777764431110333333355455555523457899*********8776 PP

  == domain 3    score: -3.4 bits;  conditional E-value: 3.2
   TIGR01292 263 TsveGvfaaGDvrdk 277
                   v G+faaG+ +++
  MMETSP1137-20121227|5601_1 414 AIVGGLFAAGEASCS 428
                 5689******87765 PP

>> TIGR03378  glycerol3P_GlpB: glycerol-3-phosphate dehydrogenase, anaerobic, B subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.1   0.4     7e-05     0.015       1      30 [.      44      73 ..      44      75 .. 0.96

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 7e-05
   TIGR03378  1 fDviiiGgGlaGlscalrlaeaGkktaiia 30
                +D +++G+G aGl +a+ la++G kta ++
  MMETSP1137-20121227|5601_1 44 YDAVVVGAGGAGLRAAFGLANQGFKTACVT 73
                9*************************9987 PP

>> TIGR01373  soxB: sarcosine oxidase, beta subunit family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.1   8.1e-05     0.018      29      52 ..      42      65 ..      27      76 .. 0.86

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 8.1e-05
   TIGR01373 29 peydviivGgGGhGlatayylake 52
                +eyd+++vG+GG Gl +a+ la++
  MMETSP1137-20121227|5601_1 42 HEYDAVVVGAGGAGLRAAFGLANQ 65
                68*******************986 PP

>> TIGR03467  HpnE: squalene-associated FAD-dependent desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   1.5   0.00018     0.038       2      25 ..      47      70 ..      46      76 .. 0.91

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 0.00018
   TIGR03467  2 vvvGgGlAGLaAAveLaraGvrvt 25
                vvvG+G AGL AA  La++G+++ 
  MMETSP1137-20121227|5601_1 47 VVVGAGGAGLRAAFGLANQGFKTA 70
                8*******************9975 PP

>> TIGR02734  crtI_fam: phytoene desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.5   0.00018      0.04       1      28 [.      46      73 ..      46      79 .. 0.92

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 0.00018
   TIGR02734  1 avViGaGlgGLAlAirLaaaGievtvle 28
                avV+GaG +GL +A  La++G ++  + 
  MMETSP1137-20121227|5601_1 46 AVVVGAGGAGLRAAFGLANQGFKTACVT 73
                79*********************98876 PP

>> TIGR02352  thiamin_ThiO: glycine oxidase ThiO
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.6   0.00035     0.075       2      50 ..      47      96 ..      46     102 .. 0.87

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 0.00035
   TIGR02352  2 lviGgGviGlsvAveLakrghkvtllekd.evgsgAskaAaGmLapvaEv 50
                +v+G+G  Gl  A+ La++g+k++ + k  +++s++ +a +G+ a++  +
  MMETSP1137-20121227|5601_1 47 VVVGAGGAGLRAAFGLANQGFKTACVTKLfPTRSHTVAAQGGINAALGNM 96
                79***********************9999888888888889998887655 PP

>> TIGR00275  TIGR00275: flavoprotein, HI0933 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.7    0.0089       1.9       2      24 ..      47      69 ..      46      88 .. 0.88
   2 ?    2.6   0.0     0.049        11     146     167 ..     228     249 ..     155     274 .. 0.73
   3 ?   -0.8   0.1       0.5   1.1e+02     257     347 ..     477     567 ..     465     570 .. 0.82

  Alignments for each domain:
  == domain 1    score: 5.0 bits;  conditional E-value: 0.0089
   TIGR00275  2 iiiGgGaaGlmaAitaaeegakV 24
                +++G+G aGl aA  +a++g k 
  MMETSP1137-20121227|5601_1 47 VVVGAGGAGLRAAFGLANQGFKT 69
                8*************999987665 PP

  == domain 2    score: 2.6 bits;  conditional E-value: 0.049
   TIGR00275 146 keleakkvilatGgksypklGs 167
                 + +++k+ ++atGg   +  ++
  MMETSP1137-20121227|5601_1 228 HRFKCKNTVIATGGYGRAWWSA 249
                 5789*********965443333 PP

  == domain 3    score: -0.8 bits;  conditional E-value: 0.5
   TIGR00275 257 elkidllpdlseeeleeelkkekkenpkktvknilkgllpkklaellleelgideekkaaelskkeleklvellkklefkvsgtegfkeae 347
                   +id+l + +  + ++++++e ++  + +   +  + l ++ ++ + + +   ++ k+ + s   +++lve+l+  ++ v+g +++  ae
  MMETSP1137-20121227|5601_1 477 IANIDFLRTNEGTKSTASIRNELQKVMQTHAAVFRVQDLLAEGCTKIDDVCASIKDVKVTDKSMIWNTDLVETLELQNLLVQGAQTMYSAE 567
                 4579999999999999999999999888887777777777778888888888888999999999999999999999999999999988776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (631 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       196  (0.0477816); expected 82.0 (0.02)
Passed bias filter:                      156  (0.0380302); expected 82.0 (0.02)
Passed Vit filter:                        53  (0.0129205); expected 4.1 (0.001)
Passed Fwd filter:                        19  (0.00463189); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              19  [number of targets reported over threshold]
# CPU time: 0.73u 0.22s 00:00:00.95 Elapsed: 00:00:00.76
# Mc/sec: 1095.86
//
Query:       MMETSP1137-20121227|5602_1  [L=133]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (133 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        62  (0.0151146); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.15s 00:00:00.32 Elapsed: 00:00:00.38
# Mc/sec: 461.96
//
Query:       MMETSP1137-20121227|5603_1  [L=219]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0034   14.5   0.6       0.94    6.5   0.0    2.2  2  TIGR03473 HpnK: hopanoid biosynthesis associated protein HpnK


Domain annotation for each model (and alignments):
>> TIGR03473  HpnK: hopanoid biosynthesis associated protein HpnK
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.5   0.0   0.00023      0.94      10      27 ..      34      51 ..      27      64 .. 0.87
   2 !    6.2   0.1   0.00028       1.1      10      28 ..      86     104 ..      82     110 .. 0.87

  Alignments for each domain:
  == domain 1    score: 6.5 bits;  conditional E-value: 0.00023
   TIGR03473 10 DFGlseevneavekahrd 27
                D Gls+++n+av+ka++d
  MMETSP1137-20121227|5603_1 34 DAGLSMNINAAVDKAWED 51
                88**************98 PP

  == domain 2    score: 6.2 bits;  conditional E-value: 0.00028
   TIGR03473  10 DFGlseevneavekahrdG 28 
                 D Gls+++n+av+ka+++ 
  MMETSP1137-20121227|5603_1  86 DAGLSMNINAAVDKAWEEA 104
                 88**************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (219 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       128  (0.0312043); expected 82.0 (0.02)
Passed bias filter:                       98  (0.0238908); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.21u 0.19s 00:00:00.40 Elapsed: 00:00:00.47
# Mc/sec: 615.01
//
Query:       MMETSP1137-20121227|5605_1  [L=641]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (641 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        84  (0.0204778); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.16s 00:00:00.56 Elapsed: 00:00:00.51
# Mc/sec: 1658.92
//
Query:       MMETSP1137-20121227|5606_1  [L=324]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.1e-14   52.4   4.4    1.4e-14   52.0   3.0    1.1  1  TIGR01933 hflK: HflK protein
    2.2e-05   21.3   8.7    0.00013   18.7   0.1    2.2  2  TIGR01932 hflC: HflC protein


Domain annotation for each model (and alignments):
>> TIGR01933  hflK: HflK protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.0   3.0   6.8e-18   1.4e-14       3     216 ..      22     237 ..      20     249 .. 0.89

  Alignments for each domain:
  == domain 1    score: 52.0 bits;  conditional E-value: 6.8e-18
   TIGR01933   3 iikeaergvvlrfGkysrvlepGlnlkipfieevyk.vnvekvrelakeglmltkDenivevelnvqYkisdp....akylfkvenaedslrqatdsalreviGdssldeiltegRsairedtkeelneildsydlGitvvdvnlqsarpPeevkeAFddviaAredeerlineaeayanevvPkarGeAqriieeAkgYkeerineAkgdverfekll 216
                 i+++a+  ++ + G ++++ ++G+++ ip + + ++ +   + ++++   +  tkD+  v++++ vqY+i++     ++  ++ +na + ++     ++r+ + + +ld+++++ + +i++++k++l  ++   + G  ++   + ++ p  +vk A +++++ +  +  + +e+ea + + + +a+ eA+r   +Ak+ +e++  + +g + + ++++
  MMETSP1137-20121227|5606_1  22 IVNQADVKIIETCGAFTKIAHAGFHCLIPCLCQCTNgMLSMRLQQMQVTCETKTKDNVFVTIKVAVQYQINNDdesiKAAQYRLTNAREQIESYVYDVVRSSVPKIELDDVFET-KDEISNSIKQNLTLSMG--EFGYAILASPITDIDPDAQVKRAMNEINKMKRLRIAAQDEGEAVKIRAIKEAEAEAARTEIQAKADAEAKFMQGQGIARQRQAII 237
                 8999999**********************976655516667899**************************986111145679******************************98.99********9976665..567888888999*********************************************************9999999888877776 PP

>> TIGR01932  hflC: HflC protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.1   6.4e-08   0.00013      36     152 ..      29     142 ..      21     150 .. 0.83
   2 !    5.8   3.8   0.00057       1.2     174     269 ..     136     231 ..     134     247 .. 0.83

  Alignments for each domain:
  == domain 1    score: 18.7 bits;  conditional E-value: 6.4e-08
   TIGR01932  36 kilkddndkalvyeaGLhvkiPliesvk..ildakiqtvDgeadrivtkekkdlivdtyikWrieDfkkyYlatgggnisaAevlikrkiedrlRseigklelkeivrssrdeqldtle 152
                 ki+ +    +++ +aG h  iP + +    +l  ++q++    +   tk++ ++++   ++++i++     +a +   +++A  +i++ + d++Rs + k el+++  +++d ++  ++
  MMETSP1137-20121227|5606_1  29 KIIETCGAFTKIAHAGFHCLIPCLCQCTngMLSMRLQQMQVTCE-TKTKDNVFVTIKVAVQYQINNDDESIKAAQ-YRLTNAREQIESYVYDVVRSSVPKIELDDVF-ETKD-EI-SNS 142
                 56666666788999********998765348********98876.68*****************99988888877.7999*************************75.5664.66.333 PP

  == domain 2    score: 5.8 bits;  conditional E-value: 0.00057
   TIGR01932 174 reilkkeilqiaesdlkdlGievvDvrikkiklsdelsesiynRmrsEreaiArkyRsqGeekaeelrakaekEvvkiLseAereariikgegdae 269
                 ++++ + i+q  + ++ ++G  ++   i  i+ + ++  ++++  +  r  iA +      + ++   a+ae  +++i ++A++ea+ ++g+g a+
  MMETSP1137-20121227|5606_1 136 KDEISNSIKQNLTLSMGEFGYAILASPITDIDPDAQVKRAMNEINKMKRLRIAAQDEGEAVKIRAIKEAEAEAARTEIQAKADAEAKFMQGQGIAR 231
                 5667778888888899********************999998888888999998776555555555566777778899*************99765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (324 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       350  (0.0853242); expected 82.0 (0.02)
Passed bias filter:                      106  (0.0258411); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.29u 0.17s 00:00:00.46 Elapsed: 00:00:00.38
# Mc/sec: 1125.38
//
Query:       MMETSP1137-20121227|5607_1  [L=373]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00012   19.9   0.0     0.0002   19.3   0.0    1.3  1  TIGR00586 mutt: mutator mutT protein
     0.0089   13.4   0.0      0.019   12.4   0.0    1.4  1  TIGR02705 nudix_YtkD: nucleoside triphosphatase YtkD
  ------ inclusion threshold ------
      0.012   13.0   0.0      0.019   12.4   0.0    1.2  1  TIGR00052 TIGR00052: nudix-type nucleoside diphosphatase, YffH/AdpP family


Domain annotation for each model (and alignments):
>> TIGR00586  mutt: mutator mutT protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.0   1.4e-07    0.0002      39      67 ..     265     293 ..     238     329 .. 0.85

  Alignments for each domain:
  == domain 1    score: 19.3 bits;  conditional E-value: 1.4e-07
   TIGR00586  39 GkieaGetpeqavvrelqeevgitaqhfe 67 
                 G ++ Get e++vvre+ ee g+ +   +
  MMETSP1137-20121227|5607_1 265 GFLDFGETLEECVVREVAEESGVAVDRQS 293
                 789*****************999887665 PP

>> TIGR02705  nudix_YtkD: nucleoside triphosphatase YtkD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.4   0.0   1.4e-05     0.019      55      84 ..     268     299 ..     260     305 .. 0.84

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 1.4e-05
   TIGR02705  55 eegetskeaaiRevleetGaiv..keltylaq 84 
                 + get +e ++Rev ee G  v  +++ y+a 
  MMETSP1137-20121227|5607_1 268 DFGETLEECVVREVAEESGVAVdrQSIRYVAS 299
                 679****************9983346888875 PP

>> TIGR00052  TIGR00052: nudix-type nucleoside diphosphatase, YffH/AdpP family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   1.4e-05     0.019      85     113 ..     263     291 ..     250     334 .. 0.85

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 1.4e-05
   TIGR00052  85 vaglvekaeslEdvarrEaiEEaGyqvkn 113
                  +g ++ +e lE++++rE  EE+G+ v +
  MMETSP1137-20121227|5607_1 263 LSGFLDFGETLEECVVREVAEESGVAVDR 291
                 6799999*******************954 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (373 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        75  (0.0182838); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.28u 0.14s 00:00:00.42 Elapsed: 00:00:00.35
# Mc/sec: 1406.63
//
Query:       MMETSP1137-20121227|5608_1  [L=751]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (751 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       187  (0.0455875); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.48u 0.17s 00:00:00.65 Elapsed: 00:00:00.77
# Mc/sec: 1287.32
//
Query:       MMETSP1137-20121227|5609_1  [L=209]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (209 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        75  (0.0182838); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.14s 00:00:00.33 Elapsed: 00:00:00.33
# Mc/sec: 835.93
//
Query:       MMETSP1137-20121227|5610_1  [L=941]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   4.6e-201  666.7   0.1   5.8e-201  666.3   0.1    1.1  1  TIGR01241 FtsH_fam: ATP-dependent metallopeptidase HflB
    2.2e-76  255.2   1.0    3.3e-76  254.6   0.7    1.2  1  TIGR01242 26Sp45: 26S proteasome subunit P45 family
    4.7e-68  228.0   0.2    6.5e-68  227.5   0.2    1.1  1  TIGR01243 CDC48: AAA family ATPase, CDC48 subfamily
    2.4e-37  126.6   0.2    3.8e-37  126.0   0.1    1.3  1  TIGR03689 pup_AAA: proteasome ATPase
    1.2e-06   25.2   1.8      2e-06   24.4   0.0    2.0  2  TIGR03922 T7SS_EccA: type VII secretion AAA-ATPase EccA
      3e-06   23.8   0.2    4.5e-06   23.2   0.1    1.1  1  TIGR00763 lon: ATP-dependent protease La
    4.4e-06   23.8   0.0    7.4e-06   23.0   0.0    1.2  1  TIGR00382 clpX: ATP-dependent Clp protease, ATP-binding subunit ClpX
    3.9e-05   20.6   2.8    0.00015   18.7   0.0    2.5  3  TIGR00390 hslU: ATP-dependent protease HslVU, ATPase subunit
    6.6e-05   19.9   0.0    0.00013   19.0   0.0    1.3  1  TIGR00635 ruvB: Holliday junction DNA helicase RuvB
    0.00058   16.8   0.0     0.0011   15.9   0.0    1.4  1  TIGR02881 spore_V_K: stage V sporulation protein K
  ------ inclusion threshold ------
      0.018   11.4   0.0      0.029   10.8   0.0    1.2  1  TIGR00368 TIGR00368: Mg chelatase-like protein
      0.049    9.6   0.0       0.79    5.6   0.0    2.2  2  TIGR02639 ClpA: ATP-dependent Clp protease ATP-binding subunit ClpA


Domain annotation for each model (and alignments):
>> TIGR01241  FtsH_fam: ATP-dependent metallopeptidase HflB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  666.3   0.1  1.7e-203  5.8e-201       6     495 ..     325     820 ..     320     821 .. 0.94

  Alignments for each domain:
  == domain 1    score: 666.3 bits;  conditional E-value: 1.7e-203
   TIGR01241   6 llsllplilllvglfllflrq.......akgaggs.rifslgkskaklleee.kvkvtfkdvaGideakeelveivdfLknpkkftklGakiPkGvllvGpPGtGktLlakavaGeagvpffsisGsdfvemfvGvGasrvrDlfeqakknaPciifiDeiDavGrkrgag.lgggndereqtLnqlLvemDGfetnegvivlaatnrpdvLDkaLlrPGrfDrqvvvdkPdlkgreeilkvhakkvklaeevd.lk.kvarrtpGfsGadlanlvneaallaarknkkevtlkeleeavdrviaGlekksrvisekekklvayheaGhalvgllvkeadkvkkvtiiprGq.alGvtlslPeedklllskkellakiavllgGrvaeeiifgevttGasnDlkkatkiaramvtelGmseklgavayeeeeeevllgkelkkekeyseetakeiDeevkriieeaykkakeilkekkeelellakeLleketiekeelkell 495
                 ll++ p  lll+ ++  ++r        + g+gg+ +if++gk+k +++++e k+ vtf+dvaG+ eak e++e+vdfLknp+k+++lGakiPkG+llvGpPGtGktLlaka+aGea+vpf+s+sGsdf+emfvGvG srvrDlf qak + PciifiDeiDavGr+rg+g   ggndere+tLnqlLvemDGf+t+ +++vla+tnrpd LD+aLlrPGrfDr ++vd Pd+kgr+ei+ vh+kk+kla +++ ++ k+a  tpGfsGa++an++neaal+aar++k++v+l++++ a+drvi Glekks+v++ ++k+ va+heaGha+ g+++++a ++ kv+i+prG  alG+++++P+e ++l +k+++++++ ++lgGrvae+++f++++tGa++Dl+k+t++a ++vt++Gm  klg+ +y+  +     + +l++++ yse+ta+ +Deev+++  +ay+++ ++l+ekk+ + +la++Lleke+i k+++ ++l
  MMETSP1137-20121227|5610_1 325 LLKVAP-TLLLIAFWAYMMRGgiggmggMGGGGGGrNIFQVGKAKPNIISKEkKTGVTFNDVAGLAEAKVEVMELVDFLKNPQKYRDLGAKIPKGALLVGPPGTGKTLLAKATAGEANVPFLSVSGSDFIEMFVGVGPSRVRDLFAQAKTMQPCIIFIDEIDAVGRARGRGaQMGGNDERENTLNQLLVEMDGFSTTGQIVVLAGTNRPDTLDQALLRPGRFDRTINVDPPDVKGRTEIFLVHLKKLKLAIDMEeVApKLASLTPGFSGAEIANVCNEAALIAARHKKEAVSLDDFHAAMDRVIGGLEKKSKVLTVEDKTRVAHHEAGHAVTGWFLEHAAPLLKVSIVPRGVaALGYAQYVPKE-RKLHTKEQMMDTMCMMLGGRVAEHLFFERISTGAQDDLQKVTRLAYSLVTSYGMNXKLGNRSYAPPA-----EGQLASQRPYSEHTAELVDEEVRALARQAYDRTLALLTEKKDLVAKLAEKLLEKEVILKDDVISVL 820
                 566667.788899999999987777555555555536*********9998875789*******************************************************************************************************************88899*************************************************************************9666524469********************************************************************************************989********99.8999**********************************************************99554.....34567789*****************************************************99876 PP

>> TIGR01242  26Sp45: 26S proteasome subunit P45 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  254.6   0.7   9.6e-79   3.3e-76     114     363 ..     375     626 ..     366     627 .. 0.95

  Alignments for each domain:
  == domain 1    score: 254.6 bits;  conditional E-value: 9.6e-79
   TIGR01242 114 eerpevsyediGGlekqlreireavelplkkpelfeevGieppkGvllyGppGtGktllakavaeetnatfirvvgselvkkyiGeGarlvrevfklakekapsiifideidaiaakr.ldsstsGdrevqrtllqllaeldGfdprgnvkviaatnrldildpallrpGrfdrlievplpdleGrleilkihtrkmklaedvd..leelaklteGasGadlkaivteaGmfaireerdkvtmedflkavekv 363
                 e++  v+++d+ Gl +   e+ e v++ lk+p+ ++++G + pkG ll GppGtGktllaka a e+n  f+ v gs++++ ++G G + vr++f  ak   p+iifideida++  r   ++ +G+ e + tl qll e+dGf + g++ v+a tnr+d ld allrpGrfdr i+v  pd++Gr ei+ +h +k+kla d++    +la lt G+sGa++  ++ ea + a r++++ v+++df  a+++v
  MMETSP1137-20121227|5610_1 375 EKKTGVTFNDVAGLAEAKVEVMELVDF-LKNPQKYRDLGAKIPKGALLVGPPGTGKTLLAKATAGEANVPFLSVSGSDFIEMFVGVGPSRVRDLFAQAKTMQPCIIFIDEIDAVGRARgRGAQMGGNDERENTLNQLLVEMDGFSTTGQIVVLAGTNRPDTLDQALLRPGRFDRTINVDPPDVKGRTEIFLVHLKKLKLAIDMEevAPKLASLTPGFSGAEIANVCNEAALIAARHKKEAVSLDDFHAAMDRV 626
                 67889*******************997.9*************************************************************************************9666267899****************************************************************************87763234799****************************************98 PP

>> TIGR01243  CDC48: AAA family ATPase, CDC48 subfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  227.5   0.2   1.9e-70   6.5e-68     450     691 ..     380     625 ..     372     700 .. 0.90

  Alignments for each domain:
  == domain 1    score: 227.5 bits;  conditional E-value: 1.9e-70
   TIGR01243 450 vkwediggleevkqelreavewplkakevfeklgirppkgvllfgppgtgktllakavatesganfiavrgpeilskwvgesekaireifrkarqaapaiifldeidaiapargadlsea...vtdrivnqllteldgleensdvvviaatnrpdildpallrpgrldrlilvpapdeearleifkihtrslplaedvd..leelakktegytgadieavvreaalaalresvksvakekleaeeke 691
                 v ++d+ gl e+k e+ e v++ lk+++ ++ lg + pkg ll gppgtgktllaka a e++  f++v g + +  +vg    ++r++f +a+   p+iif+deida+  arg+  +       ++ +nqll e+dg+  + ++vv+a tnrpd ld allrpgr+dr i v +pd + r eif +h ++l+la d++    +la  t g++ga+i+ v+ eaal a r+   +v+ + + a  + 
  MMETSP1137-20121227|5610_1 380 VTFNDVAGLAEAKVEVMELVDF-LKNPQKYRDLGAKIPKGALLVGPPGTGKTLLAKATAGEANVPFLSVSGSDFIEMFVGVGPSRVRDLFAQAKTMQPCIIFIDEIDAVGRARGRGAQMGgndERENTLNQLLVEMDGFSTTGQIVVLAGTNRPDTLDQALLRPGRFDRTINVDPPDVKGRTEIFLVHLKKLKLAIDMEevAPKLASLTPGFSGAEIANVCNEAALIAARHKKEAVSLDDFHAAMDR 625
                 899******************8.9*************************************************************************************9999887655411256679*******************************************************************999733469**************************88877766666555444 PP

>> TIGR03689  pup_AAA: proteasome ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  126.0   0.1   1.1e-39   3.8e-37     174     384 ..     375     574 ..     359     624 .. 0.87

  Alignments for each domain:
  == domain 1    score: 126.0 bits;  conditional E-value: 1.1e-39
   TIGR03689 174 eevPdvtyadiGGldsqieqirdavelPflhkelyreydlkpPkGvllyGPPGcGktliakavanslaekvaedgeaksyflnikGPellnkyvGeterqirliferarekaaegrPvvvffdemdslfrtrGsGvs...sdvettvvPqllaeldGveslenviviGasnredlidPailrPGrldvkirierPdaeaaadilakylte.dlPl 384
                 e    vt++d+ Gl +   ++ + v++ +++++ yr+ + k PkG ll GPPG+Gktl+aka a           ea+  fl++ G ++++ +vG    ++r +f++a+      +P ++f+de+d++ r+rG G      d     + qll e+dG  +   ++v+  +nr d +d a+lrPGr+d  i ++ Pd ++ ++i+  +l++ +l +
  MMETSP1137-20121227|5610_1 375 EKKTGVTFNDVAGLAEAKVEVMELVDF-LKNPQKYRDLGAKIPKGALLVGPPGTGKTLLAKATAG----------EANVPFLSVSGSDFIEMFVGVGPSRVRDLFAQAKT----MQPCIIFIDEIDAVGRARGRGAQmggNDERENTLNQLLVEMDGFSTTGQIVVLAGTNRPDTLDQALLRPGRFDRTINVDPPDVKGRTEIFLVHLKKlKLAI 574
                 55678*********9998888888885.578999****************************884..........45678*************************99865....69*****************9975333577677789**********************************************************98634544 PP

>> TIGR03922  T7SS_EccA: type VII secretion AAA-ATPase EccA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.4   0.0     6e-09     2e-06     276     430 ..     383     537 ..     377     552 .. 0.74
   2 ?   -1.0   0.2       0.3     1e+02     258     300 ..     606     648 ..     596     656 .. 0.79

  Alignments for each domain:
  == domain 1    score: 24.4 bits;  conditional E-value: 6e-09
   TIGR03922 276 akqiGlervkeqvaalkssvevalvRaerGlavaqrskHlllaGPPGtGkttiArvvakiyaGlgvlrkpevrEvsRadligeyigeseaktnelidkaLg...gvlFlDEayaLvekrdgakddfG....leaidtLLarlEndR.drlvviiAGYe..kdlDk 430
                 + + Gl+++k +v  l + ++     ++ G ++++     ll+GPPGtGkt +A++ a    G +   +     vs +d+i  ++g    +  +l  +a      ++F+DE+ a+   r    ++ G     + +++LL+ ++       +v+ AG +  + lD+
  MMETSP1137-20121227|5610_1 383 NDVAGLAEAKVEVMELVDFLKNPQKYRDLGAKIPK---GALLVGPPGTGKTLLAKATA----GEA---NVPFLSVSGSDFIEMFVGVGPSRVRDLFAQAKTmqpCIIFIDEIDAVGRARGRGAQMGGnderENTLNQLLVEMDGFStTGQIVVLAGTNrpDTLDQ 537
                 677899**********9999999999999999886...569**********9888766....443...3346789********************99886422379********98774443444442221579********96431345566666542244555 PP

  == domain 2    score: -1.0 bits;  conditional E-value: 0.3
   TIGR03922 258 aaaaerkaklLaEaeaeLakqiGlervkeqvaalkssvevalv 300
                 aa + ++a  L + +a ++++iG  + k++v  ++++++va  
  MMETSP1137-20121227|5610_1 606 AARHKKEAVSLDDFHAAMDRVIGGLEKKSKVLTVEDKTRVAHH 648
                 3445566999************99999**********999865 PP

>> TIGR00763  lon: ATP-dependent protease La
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.2   0.1   1.3e-08   4.5e-06     330     434 ..     387     489 ..     374     499 .. 0.77

  Alignments for each domain:
  == domain 1    score: 23.2 bits;  conditional E-value: 1.3e-08
   TIGR00763 330 glkkvKeRilEylavk...klrkklkgki...lclvGPPGVGKtSlaksiAkalnrkfvrlslGGlkDvaeikGHRrtYvGalPGkiiqglkkvktenP.lillDEiDKlgs 434
                 gl + K  ++E +      ++  +l +ki     lvGPPG GKt lak+ A   n  f+   + G +D  e+      +vG  P ++ + + ++kt+ P +i++DEiD +g+
  MMETSP1137-20121227|5610_1 387 GLAEAKVEVMELVDFLknpQKYRDLGAKIpkgALLVGPPGTGKTLLAKATAGEANVPFLS--VSG-SDFIEM------FVGVGPSRVRDLFAQAKTMQPcIIFIDEIDAVGR 489
                 67777777777665551113444445566444589***********************75..556.677775......9********************4567******996 PP

>> TIGR00382  clpX: ATP-dependent Clp protease, ATP-binding subunit ClpX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.0   0.0   2.2e-08   7.4e-06     120     197 ..     419     490 ..     398     501 .. 0.82

  Alignments for each domain:
  == domain 1    score: 23.0 bits;  conditional E-value: 2.2e-08
   TIGR00382 120 illiGptGsGktllaqtlakeldvpfaiadattlteaGyvGedvenillkllqaadydvekaekGiiyideidkiark 197
                  ll+Gp G+Gktlla++ a e +vpf     + + e  +vG     +   l+ +     +  +  ii+ideid + r 
  MMETSP1137-20121227|5610_1 419 ALLVGPPGTGKTLLAKATAGEANVPFLSVSGSDFIEM-FVGVGPSRV-RDLFAQ----AKTMQPCIIFIDEIDAVGRA 490
                 589***********************88888888885.888776655.444444....4567999*********9885 PP

>> TIGR00390  hslU: ATP-dependent protease HslVU, ATPase subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.0   4.3e-07   0.00015      46     105 ..     415     472 ..     387     477 .. 0.90
   2 ?    2.5   0.0     0.035        12     244     263 ..     472     491 ..     469     520 .. 0.68
   3 ?   -3.3   0.3       2.1     7e+02     207     240 ..     781     814 ..     767     819 .. 0.74

  Alignments for each domain:
  == domain 1    score: 18.7 bits;  conditional E-value: 4.3e-07
   TIGR00390  46 vPknilmiGstGvGkteiarrlaklaeaPfikveatkftevGyvGrdveslvrdlvdaav 105
                 +Pk  l++G+ G Gkt +a+  a  a++Pf+ v  + f e+ +vG    s vrdl  +a 
  MMETSP1137-20121227|5610_1 415 IPKGALLVGPPGTGKTLLAKATAGEANVPFLSVSGSDFIEM-FVGVG-PSRVRDLFAQAK 472
                 7***************************************7.89975.689999988775 PP

  == domain 2    score: 2.5 bits;  conditional E-value: 0.035
   TIGR00390 244 rveesGiifideidkiakkg 263
                 +  +  iifideid + +  
  MMETSP1137-20121227|5610_1 472 KTMQPCIIFIDEIDAVGRAR 491
                 556778********997643 PP

  == domain 3    score: -3.3 bits;  conditional E-value: 2.1
   TIGR00390 207 dkkkkrklkvkeakkvlieeeaeklvdseeikqe 240
                 ++   r+l +   kk l+++ aekl+++e i ++
  MMETSP1137-20121227|5610_1 781 RQAYDRTLALLTEKKDLVAKLAEKLLEKEVILKD 814
                 4556788888888889999999999998877554 PP

>> TIGR00635  ruvB: Holliday junction DNA helicase RuvB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.0   3.7e-07   0.00013      33      95 ..     419     489 ..     403     492 .. 0.81

  Alignments for each domain:
  == domain 1    score: 19.0 bits;  conditional E-value: 3.7e-07
   TIGR00635  33 vllyGPPGlGkttlakiiakelgvklkitsgpal.........ekpgDlaailtaleegdvlfiDeihrlsk 95 
                  ll+GPPG Gkt lak  a e +v    +sg  +         ++ +Dl a   ++++  ++fiDei ++ +
  MMETSP1137-20121227|5610_1 419 ALLVGPPGTGKTLLAKATAGEANVPFLSVSGSDFiemfvgvgpSRVRDLFAQAKTMQP-CIIFIDEIDAVGR 489
                 69**********************9888888765333344333578899988888776.699*****99876 PP

>> TIGR02881  spore_V_K: stage V sporulation protein K
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   3.2e-06    0.0011       5     152 ..     382     530 ..     379     568 .. 0.76

  Alignments for each domain:
  == domain 1    score: 15.9 bits;  conditional E-value: 3.2e-06
   TIGR02881   5 leklvGleevkelikeiyalilinekrkeeglkaekqvlhmifkGnPGtGkttvarllaklfkelnvlskGhlieveradlvGeyiGhtaqktrevikka...lGGvlfideaysl..arG.....GekdfGkeaidtlvkemedkr.eelvlilaGys 152
                 ++ + Gl e k  + e+  + +  +k ++ g k  k +l   + G PGtGkt +a+  a    e nv     ++ v  +d++  ++G    ++r++  +a   +  ++fide  ++  arG     G  d   +++++l+ em+  +    +++laG +
  MMETSP1137-20121227|5610_1 382 FNDVAGLAEAKVEVMELVDFLKNPQKYRDLGAKIPKGAL---LVGPPGTGKTLLAKATA---GEANV----PFLSVSGSDFIEMFVGVGPSRVRDLFAQAktmQPCIIFIDEIDAVgrARGrgaqmGGNDERENTLNQLLVEMDGFStTGQIVVLAGTN 530
                 57789***************9999999999999999886...67*********999877...47777....588999******************99877222468*****976652266632333334444556777777777644145677777754 PP

>> TIGR00368  TIGR00368: Mg chelatase-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   8.5e-05     0.029     214     232 ..     419     437 ..     394     447 .. 0.89

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 8.5e-05
   TIGR00368 214 llllGPPGsGktllakrlq 232
                  ll+GPPG+Gktllak   
  MMETSP1137-20121227|5610_1 419 ALLVGPPGTGKTLLAKATA 437
                 589************9865 PP

>> TIGR02639  ClpA: ATP-dependent Clp protease ATP-binding subunit ClpA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   0.0    0.0023      0.79     489     525 ..     419     454 ..     411     460 .. 0.87
   2 ?    1.5   0.0     0.042        14     264     308 ..     462     509 ..     455     562 .. 0.81

  Alignments for each domain:
  == domain 1    score: 5.6 bits;  conditional E-value: 0.0023
   TIGR02639 489 sflfvGptGvGktelakqLaeelgvellrfDmseyme 525
                 + l vGp G Gkt lak+ a e +v +l    s++ e
  MMETSP1137-20121227|5610_1 419 A-LLVGPPGTGKTLLAKATAGEANVPFLSVSGSDFIE 454
                 4.679***********************999999887 PP

  == domain 2    score: 1.5 bits;  conditional E-value: 0.042
   TIGR02639 264 erlkevveeiekeedailfiDeihtivga...gatsggsldasnlLkP 308
                  r++++ ++ +  +  i+fiDei ++  a   ga  gg+ +  n L  
  MMETSP1137-20121227|5610_1 462 SRVRDLFAQAKTMQPCIIFIDEIDAVGRArgrGAQMGGNDERENTLNQ 509
                 688999999999999********9986442226777777666666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (941 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       215  (0.0524135); expected 82.0 (0.02)
Passed bias filter:                      140  (0.0341297); expected 82.0 (0.02)
Passed Vit filter:                        39  (0.00950756); expected 4.1 (0.001)
Passed Fwd filter:                        13  (0.00316919); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.86u 0.18s 00:00:01.04 Elapsed: 00:00:00.74
# Mc/sec: 1678.40
//
Query:       MMETSP1137-20121227|5613_1  [L=79]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (79 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       147  (0.0358362); expected 82.0 (0.02)
Passed bias filter:                      142  (0.0346173); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.18s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 359.56
//
Query:       MMETSP1137-20121227|5614_1  [L=183]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (183 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        97  (0.023647); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.12s 00:00:00.31 Elapsed: 00:00:00.31
# Mc/sec: 779.16
//
Query:       MMETSP1137-20121227|5615_1  [L=837]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (837 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       146  (0.0355924); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.51u 0.17s 00:00:00.68 Elapsed: 00:00:00.71
# Mc/sec: 1555.98
//
Query:       MMETSP1137-20121227|5618_1  [L=294]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (294 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        52  (0.0126767); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.14s 00:00:00.36 Elapsed: 00:00:00.36
# Mc/sec: 1077.91
//
Query:       MMETSP1137-20121227|5619_1  [L=159]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (159 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        65  (0.0158459); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.12s 00:00:00.28 Elapsed: 00:00:00.28
# Mc/sec: 723.66
//
Query:       MMETSP1137-20121227|5620_1  [L=210]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (210 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       120  (0.029254); expected 82.0 (0.02)
Passed bias filter:                       98  (0.0238908); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.10s 00:00:00.31 Elapsed: 00:00:00.32
# Mc/sec: 866.18
//
Query:       MMETSP1137-20121227|5621_1  [L=159]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.2e-18   65.0   0.0    1.5e-18   64.7   0.0    1.1  1  TIGR01068 thioredoxin: thioredoxin
    6.4e-11   40.3   0.0    8.9e-11   39.9   0.0    1.2  1  TIGR01126 pdi_dom: protein disulfide-isomerase domain
    1.6e-06   25.8   0.0    1.9e-06   25.5   0.0    1.0  1  TIGR01130 ER_PDI_fam: protein disulfide isomerases
    3.2e-06   24.7   0.0      4e-06   24.4   0.0    1.1  1  TIGR00385 dsbE: periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily
     0.0011   17.2   0.0     0.0018   16.6   0.0    1.4  1  TIGR02196 GlrX_YruB: glutaredoxin-like protein, YruB-family


Domain annotation for each model (and alignments):
>> TIGR01068  thioredoxin: thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.7   0.0   1.8e-21   1.5e-18       3     100 ..      59     158 ..      57     159 .] 0.86

  Alignments for each domain:
  == domain 1    score: 64.7 bits;  conditional E-value: 1.8e-21
   TIGR01068   3 eenfeetvas.sdklvlvDfwAeWCgpCkmlaPvleelakeleekvkvvKlnvdeeqe...iaakygirsiPtlllfkngkevkrvvGakpkaalkeliekl 100
                 +e+f+e+++s +d lv++D+  +WCgpCk++aP +ee++++++ +v+++K+  d+++e   + ++ g+r++P   + kn k  +++ Gak  +al+++ie++
  MMETSP1137-20121227|5621_1  59 TEEFDEALKSaGDSLVVIDYSTSWCGPCKIIAPKFEEFSENYK-NVAFLKVMGDSSPEadkLMRSQGVRALPSFHFWKNQKLLDSISGAKA-QALQDAIEAN 158
                 67888888763689*************************8888.6******9998765111667899*********************998.7888888765 PP

>> TIGR01126  pdi_dom: protein disulfide-isomerase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.9   0.0   1.1e-13   8.9e-11       3      91 ..      59     146 ..      57     158 .. 0.78

  Alignments for each domain:
  == domain 1    score: 39.9 bits;  conditional E-value: 1.1e-13
   TIGR01126   3 aenfdelvlde.nkdvlvefyaPWCGhCkklaPeyeklakelkkeeekvkiakvdataekelaskfkvsgfPtlkffkkgkkepvdyeGe 91 
                 +e+fde+++++ ++ v++++   WCG Ck +aP++e+ ++++k+    +k+    + + ++l+++ +v++ P  +f+k++k    + +G+
  MMETSP1137-20121227|5621_1  59 TEEFDEALKSAgDSLVVIDYSTSWCGPCKIIAPKFEEFSENYKNVA-FLKVMGDSSPEADKLMRSQGVRALPSFHFWKNQKL-LDSISGA 146
                 5789999987514567789999********************9754.4666555566679999***************9985.5555555 PP

>> TIGR01130  ER_PDI_fam: protein disulfide isomerases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.5   0.0   2.3e-09   1.9e-06       7      93 ..      58     145 ..      51     152 .. 0.69

  Alignments for each domain:
  == domain 1    score: 25.5 bits;  conditional E-value: 2.3e-09
   TIGR01130   7 tkenfddlike..nelvLveFYAPWCGHCksLaPeYekAAeelkkkspkvklakv..Da.teekelaqkygvsGyPtLkifrngesssdYnG 93 
                 ++e+fd+++k+  + lv++ +   WCG Ck +aP++e+  e+ k+    v+  kv  D+  e  +l +  gv+  P+  +++n +     +G
  MMETSP1137-20121227|5621_1  58 STEEFDEALKSagDSLVVIDYSTSWCGPCKIIAPKFEEFSENYKN----VAFLKVmgDSsPEADKLMRSQGVRALPSFHFWKNQKLLDSISG 145
                 568899999873346777888889999999999999876665554....4455553444145588999999999999999998876555555 PP

>> TIGR00385  dsbE: periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.4   0.0   4.8e-09     4e-06      14      97 ..      23     105 ..       8     125 .. 0.75

  Alignments for each domain:
  == domain 1    score: 24.4 bits;  conditional E-value: 4.8e-09
   TIGR00385  14 alllllkrnaegedikelesaligkpvpaekeaelkekvqlltaevlkkgklvLlnvwasWCptCraehplLkelakeglrivg 97 
                 a  l+l++na    +++l sal+  p+p  k  e + + ++ +a       lv+++  +sWC++C+   p  +e++++  ++  
  MMETSP1137-20121227|5621_1  23 AGVLQLAPNA-AAAPSQLRSALVRCPAPIAKVIEVSSTEEFDEALKSAGDSLVVIDYSTSWCGPCKIIAPKFEEFSENYKNVAF 105
                 3356888888.899*********************99988877655566678889999********999999999988555544 PP

>> TIGR02196  GlrX_YruB: glutaredoxin-like protein, YruB-family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0   2.3e-06    0.0018       5      55 ..      78     132 ..      74     156 .. 0.68

  Alignments for each domain:
  == domain 1    score: 16.6 bits;  conditional E-value: 2.3e-06
   TIGR02196   5 YttpwCppCkkakeyLkskgiafeei...dvekd.saaaeellkklgqrsvPviv 55 
                 Y+t wC+pCk +  ++++   +++++    v  d s +a++l++ +g r+ P   
  MMETSP1137-20121227|5621_1  78 YSTSWCGPCKIIAPKFEEFSENYKNVaflKVMGDsSPEADKLMRSQGVRALPSFH 132
                 *************999986666666522234444156889999999999999766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (159 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       122  (0.0297416); expected 82.0 (0.02)
Passed bias filter:                      114  (0.0277913); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.17u 0.18s 00:00:00.35 Elapsed: 00:00:00.37
# Mc/sec: 567.20
//
Query:       MMETSP1137-20121227|5622_1  [L=293]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.9e-61  204.6   0.2    2.4e-61  204.2   0.1    1.1  1  TIGR02251 HIF-SF_euk: dullard-like phosphatase domain
    6.9e-19   66.4   2.9    1.8e-17   61.8   2.0    2.1  1  TIGR02250 FCP1_euk: FCP1-like phosphatase, phosphatase domain
     0.0034   14.5   0.0      0.006   13.7   0.0    1.3  1  TIGR01533 lipo_e_P4: 5'-nucleotidase, lipoprotein e(P4) family


Domain annotation for each model (and alignments):
>> TIGR02251  HIF-SF_euk: dullard-like phosphatase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  204.2   0.1   1.8e-64   2.4e-61       3     166 ..      59     220 ..      57     221 .. 0.98

  Alignments for each domain:
  == domain 1    score: 204.2 bits;  conditional E-value: 1.8e-64
   TIGR02251   3 tlvLDLDeTLvhsslkkakaieadlklevliekkiilvyVlkRPyvdeFlerlsklyelvvfTasleeYadkvldildakkkvlsrrlyRescvetngkyvKdlslvkkdlskvviiDnsplsyslqpeNaipiksfisdenDeeLlklipflealrkeddvrs 166
                 +lvLDLDeTL+hss+      ++d++++v ++  +++vyV+kRP+++ F++r+s+l+e++vfTas+++Yadk+l i+d+++k ++ r +R+scv + g+y Kdl+++++d++k+ i+Dnsp+++ +q +N+ipi+s+++d++D+eLlklipfle+l++ +dv +
  MMETSP1137-20121227|5622_1  59 SLVLDLDETLLHSSIMPLA--TYDIVFPVHFNAMNYQVYVRKRPHMEYFMNRVSQLFEIIVFTASQKVYADKLLSIIDPQRKWIKYRVFRDSCVIVDGNYLKDLTILGRDMAKTCIVDNSPQAFGFQLSNGIPIESWFDDPSDTELLKLIPFLESLQTAEDVXP 220
                 69************99988..9*******************************************************************************************************************************************976 PP

>> TIGR02250  FCP1_euk: FCP1-like phosphatase, phosphatase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.8   2.0   1.3e-20   1.8e-17       7     150 ..      58     190 ..      53     194 .. 0.81

  Alignments for each domain:
  == domain 1    score: 61.8 bits;  conditional E-value: 1.3e-20
   TIGR02250   7 LvLvlDlDqtlihttkeselseeekkkkeekeseklkdlkkfkleekleylvklRPfvkeflkkvsklyelhvytmgtraYakeiakllDPekklFgdrilsrdestsaktKsLkkl..lpadesavviiDdredvWkksk.nLikv 150
                 ++LvlDlD+tl+h++  +  + +                 +f+ + + +++v+ RP+++ f+++vs+l+e+ v+t +++ Ya +++ ++DP++k+ + r+  rd +   +   Lk+l  l+ d +  +i+D++ + +  +  n i +
  MMETSP1137-20121227|5622_1  58 ISLVLDLDETLLHSSIMPLATYDIV------------FPVHFNAM-NYQVYVRKRPHMEYFMNRVSQLFEIIVFTASQKVYADKLLSIIDPQRKWIKYRVF-RDSCVIVDGNYLKDLtiLGRDMAKTCIVDNSPQAFGFQLsNGIPI 190
                 68************99987766433............34567777.4789*************************************************97.7888866666665541167889999*****998876655465555 PP

>> TIGR01533  lipo_e_P4: 5'-nucleotidase, lipoprotein e(P4) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   0.0   4.4e-06     0.006      76     122 ..      50      99 ..      46     104 .. 0.86

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 4.4e-06
   TIGR01533  76 kkekd.kkkaivlDlDEtvLdns..pyqgyqvknnkkfdeedWdkwvkaa 122
                 kk+++ ++ ++vlDlDEt+L  s  p ++y +    +f+  +++ +v+++
  MMETSP1137-20121227|5622_1  50 KKTRGaHPISLVLDLDETLLHSSimPLATYDIVFPVHFNAMNYQVYVRKR 99 
                 5566679*************9876699******99999999999999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (293 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        82  (0.0199902); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.24u 0.16s 00:00:00.40 Elapsed: 00:00:00.36
# Mc/sec: 1074.24
//
Query:       MMETSP1137-20121227|5623_1  [L=245]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (245 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        62  (0.0151146); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.18s 00:00:00.40 Elapsed: 00:00:00.42
# Mc/sec: 769.94
//
Query:       MMETSP1137-20121227|5623_2  [L=276]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (276 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        54  (0.0131643); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.10s 00:00:00.32 Elapsed: 00:00:00.51
# Mc/sec: 714.29
//
Query:       MMETSP1137-20121227|5624_1  [L=320]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (320 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       103  (0.0251097); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.13s 00:00:00.37 Elapsed: 00:00:00.37
# Mc/sec: 1141.53
//
Query:       MMETSP1137-20121227|5625_1  [L=360]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.4e-44  148.0   1.2    9.4e-44  147.7   0.8    1.1  1  TIGR02280 PaaB1: phenylacetate degradation probable enoyl-CoA hydratase PaaB
    2.6e-26   89.9   0.8    3.3e-26   89.6   0.5    1.0  1  TIGR02440 FadJ: fatty oxidation complex, alpha subunit FadJ
    9.6e-25   84.6   0.1    1.2e-24   84.2   0.1    1.0  1  TIGR02441 fa_ox_alpha_mit: fatty acid oxidation complex, alpha subunit, mitochondrial
    1.1e-22   78.7   0.0    1.4e-22   78.4   0.0    1.1  1  TIGR01929 menB: naphthoate synthase
    1.4e-22   77.7   0.0    1.8e-22   77.3   0.0    1.1  1  TIGR02437 FadB: fatty oxidation complex, alpha subunit FadB
    9.5e-22   75.4   0.0    1.2e-21   75.0   0.0    1.1  1  TIGR03210 badI: 2-ketocyclohexanecarboxyl-CoA hydrolase
    3.5e-20   70.2   2.6    4.8e-20   69.7   1.8    1.1  1  TIGR03189 dienoyl_CoA_hyt: cyclohexa-1,5-dienecarbonyl-CoA hydratase
    1.8e-16   58.0   0.0    2.5e-16   57.5   0.0    1.1  1  TIGR03200 dearomat_oah: 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase


Domain annotation for each model (and alignments):
>> TIGR02280  PaaB1: phenylacetate degradation probable enoyl-CoA hydratase PaaB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  147.7   0.8   1.8e-46   9.4e-44       4     251 ..     112     358 ..     109     360 .] 0.95

  Alignments for each domain:
  == domain 1    score: 147.7 bits;  conditional E-value: 1.8e-46
   TIGR02280   4 elekgvlrltlnrpdklnsfteemhaelaealerverdd.vrallltGaGrGfcaGqdlsernvtkgaapdlGetvekfynplvrrlaalpkpvvvavnGvaaGaGanlalagdivlaaesakfiqafaklGlipdsGGtwllprlvGrarakglallgekldaetaaewGliwqvvddealadevqalaahlakqptrglalikralqaaetnsldtqldlerdlqrelGrsadyaeGvaafldkrep 251
                 e ++ v+ +tln p  ln++te m + + +  +++   + +ra+++tG+G+ f+aG dl+ +  ++ ++p+    + + +  l   +++lp p+++a+nG a GaG  +ala+d+ +aa +ak+ ++f+ lGl p  GGt++lp +vG   a+ + l++e l++e+a   Gl+  +  de   +++  +a+++a+q   +  l  ++l+  + ++l+  l  e d q +   +a+ aeGv+++ +kr+p
  MMETSP1137-20121227|5625_1 112 ERKGTVAVMTLNSPRTLNAMTEPMGKCVSHIAKELAAAEwLRAVVVTGSGQAFSAGGDLQWLLERHADSPQRNAKIMREFYELFLCVRKLPVPIIAAINGPAIGAGLCFALACDVRIAAPKAKLGMTFVGLGLHPGMGGTHFLPSIVGPQVAARMLLTAEVLSSEQALRDGLVASI--DEDCVQAALXMANQMASQAPVASRLCVQTLRMKQDRDLEMALVREADSQAQSYATAELAEGVQSLREKRKP 358
                 557789************************9999988888*********************999999999999999999999999***************************************************************************************9776..5556778889*******999999**********************************************98 PP

>> TIGR02440  FadJ: fatty oxidation complex, alpha subunit FadJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.6   0.5   6.5e-29   3.3e-26       7     205 ..     113     311 ..     109     342 .. 0.83

  Alignments for each domain:
  == domain 1    score: 89.6 bits;  conditional E-value: 6.5e-29
   TIGR02440   7 redniailtidvpgeklntlkaefadqvaeilkqlkekkelrglvlvsgkpdsfiagadismlaack..tadeakalaqkgqellaelealpikvvaaihgaclggglelalachsrvcsdddktvlglpevqlgllpgsggtqrlprlvgvskaldmiltgkqlrakqalklglvddvvpk..silldvavelakkgklkrk 205
                 r+ ++a++t++ p  +ln++   +++ v++i k+l + + lr +v v+g  ++f ag d++ l   +  + +   ++ ++  el+  ++ lp++++aai g+ +g gl +alac  r+ +  +k+ lg+  v lgl pg ggt  lp +vg   a  m+lt   l + qal+ glv  +     +  l +a ++a +    ++
  MMETSP1137-20121227|5625_1 113 RKGTVAVMTLNSPR-TLNAMTEPMGKCVSHIAKELAAAEWLRAVV-VTGSGQAFSAGGDLQWLLERHadSPQRNAKIMREFYELFLCVRKLPVPIIAAINGPAIGAGLCFALACDVRIAA--PKAKLGMTFVGLGLHPGMGGTHFLPSIVGPQVAARMLLTAEVLSSEQALRDGLVASIDEDcvQAALXMANQMASQAPVASR 311
                 67789999999885.89*************************876.578889*********8865440144555567789999***********************************86..7999**************************************************866543113456677777766655555 PP

>> TIGR02441  fa_ox_alpha_mit: fatty acid oxidation complex, alpha subunit, mitochondrial
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.2   0.1   2.3e-27   1.2e-24      14     195 ..     108     287 ..      96     336 .. 0.87

  Alignments for each domain:
  == domain 1    score: 84.2 bits;  conditional E-value: 2.3e-27
   TIGR02441  14 hlsvevkgdvavvkidspnskvntlskelsaefkevldeletneavksavlisskpgsfvaGadidml..kacktaeevtqlsreaqklleklekskkpivaaisGsclGGGlelalachyriatkdkktllglpevllGllpGaGgtqrlpklvsvpaaldleltGkkikadrakklGlvdrl 195
                  ++ e kg vav+ ++sp +  n++++ + + ++++ +el + e +++ v++++  ++f aG d++ l  +  ++ +   ++ re  +l+  + k   pi+aai+G  +G Gl  alac+ ria+   k++lg+  v lGl pG Ggt  lp +v+ + a  + lt   + +++a + Glv  +
  MMETSP1137-20121227|5625_1 108 IVQLERKGTVAVMTLNSPRT-LNAMTEPMGKCVSHIAKELAAAEWLRA-VVVTGSGQAFSAGGDLQWLleRHADSPQRNAKIMREFYELFLCVRKLPVPIIAAINGPAIGAGLCFALACDVRIAAP--KAKLGMTFVGLGLHPGMGGTHFLPSIVGPQVAARMLLTAEVLSSEQALRDGLVASI 287
                 567899************97.799*********************996.55678899*********872233456788999*******************************************85..888*************************************************9876 PP

>> TIGR01929  menB: naphthoate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.4   0.0   2.6e-25   1.4e-22      10     254 ..     114     358 ..     107     360 .] 0.87

  Alignments for each domain:
  == domain 1    score: 78.4 bits;  conditional E-value: 2.6e-25
   TIGR01929  10 edaiakiaidrpkvrnafrpktvdellealddaredsdiGvviltGaGdkafcsGGdqk.vrgksG.ykdesGesrlnvlevqrlirtlpkpvialvnGyaiGGGhvlhvvcdltiasenarfgqtgpkvGsfdgGyGsaylarivGqkkareifflcrqydaeeaekmGlvnavvelaeleketvewareilaksplalrllkaalnadldGqaGlqel.aGeatllfylteeaqeGrdaflekrep 254
                 + ++a ++++ p+ +na+     + + ++ ++    + +  v++tG+G +af +GGd + +  ++    + + +   +  e+   +r lp p+ia +nG aiG G  + + cd+ ia+ +a++g t   +G   g  G+ +l  ivG + a  + +++   ++e+a + Glv  +   ++  ++++ +a+++ +++p+a rl  ++l +++d    + ++   ++    y t+e  eG +++ ekr+p
  MMETSP1137-20121227|5625_1 114 KGTVAVMTLNSPRTLNAMTEPMGKCVSHIAKELAAAEWLRAVVVTGSG-QAFSAGGDLQwLLERHAdSPQRNAKIMREFYELFLCVRKLPVPIIAAINGPAIGAGLCFALACDVRIAAPKAKLGMTFVGLGLHPGMGGTHFLPSIVGPQVAARMLLTAEVLSSEQALRDGLVASID--EDCVQAALXMANQMASQAPVASRLCVQTLRMKQDRDLEMALVrEADSQAQSYATAELAEGVQSLREKRKP 358
                 56788899*********998777777777777788888999*****98.69******65244444424455556667899****************************************************999999**********************************9984..68889*************************999988776665245778889******************9 PP

>> TIGR02437  FadB: fatty oxidation complex, alpha subunit FadB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.3   0.0   3.4e-25   1.8e-22      16     223 ..     116     326 ..     104     344 .. 0.83

  Alignments for each domain:
  == domain 1    score: 77.3 bits;  conditional E-value: 3.4e-25
   TIGR02437  16 giaelvfdapgsvnkldratlasldkaldalkaqsdlkgllltsdkdafivGaditeflelfakpeeellqwleeansvfnkledlpvptvaavkGfalGGGlevvlatdfriadktakiGlpetklGilpGfGGtvrlprliGadsaleiiaaGkevraedalkvglvdavvkaekleaa...alqllkda.inekldykakrqrkleklk 223
                 ++a ++++ p ++n +       +++    l a   l+++++t + +af  G d+  +le  a   ++  + ++e  ++f  +  lpvp +aa++G a+G Gl   la+d ria+++ak+G+  + lG+ pG+GGt  lp ++G + a  ++ + +   +e+al+ glv ++ + + ++aa   a q+  +a ++  l  ++ r ++   l+
  MMETSP1137-20121227|5625_1 116 TVAVMTLNSPRTLNAMTEPMGKCVSHIAKELAAAEWLRAVVVTGSGQAFSAGGDLQWLLERHADSPQRNAKIMREFYELFLCVRKLPVPIIAAINGPAIGAGLCFALACDVRIAAPKAKLGMTFVGLGLHPGMGGTHFLPSIVGPQVAARMLLTAEVLSSEQALRDGLVASI-DEDCVQAAlxmANQMASQApVASRLCVQTLRMKQDRDLE 326
                 566677777777887777777777777788889999****************************999999***********************************************************************************************9998665.444433321114444444436666766666666555555 PP

>> TIGR03210  badI: 2-ketocyclohexanecarboxyl-CoA hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.0   0.0   2.3e-24   1.2e-21       7     251 ..     112     358 ..     107     360 .] 0.83

  Alignments for each domain:
  == domain 1    score: 75.0 bits;  conditional E-value: 2.3e-24
   TIGR03210   7 evrngvatiiinraeklnafrgrtcdelikalkkagydreigvivlagagdkafctggdqs....thdgnydgrgviglpveelhsairdvakpviarvqgyaigggnvlvticdltiasekavlgqvgpkvgsvdpgy.gtallarvvgekkareiwylcrrysakealamglvnavvphdqldaevkkwcdeiveksptalaiakrsfnvdtahqagiaglgm.yalklyydteesregvkalqekrkp 251
                 e +  va++++n +  lna+     + + +  k+      + ++v++g+g +af +ggd       h  + +    i   + el  ++r ++ p+ia ++g aig g  ++  cd+ ia+ ka lg +   +g + pg+ gt +l  +vg + a  +   +   s+++al  glv   +  d ++a +   ++++  ++p a  ++ +++ +  ++   +a +    +    y t+e +egv++l+ekrkp
  MMETSP1137-20121227|5625_1 112 ERKGTVAVMTLNSPRTLNAMTEPMGKCVSHIAKELAAAEWLRAVVVTGSG-QAFSAGGDLQwlleRHADSPQRNAKIMREFYELFLCVRKLPVPIIAAINGPAIGAGLCFALACDVRIAAPKAKLGMTFVGLG-LHPGMgGTHFLPSIVGPQVAARMLLTAEVLSSEQALRDGLVAS-IDEDCVQAAL-XMANQMASQAPVASRLCVQTLRMKQDRDLEMALVREaDSQAQSYATAELAEGVQSLREKRKP 358
                 556679999**********98665555555555555555567899***99.69******64222134444445567888899999******************************************998888.678873699*******************************965.6788888877.57999********************999999987651456678******************9 PP

>> TIGR03189  dienoyl_CoA_hyt: cyclohexa-1,5-dienecarbonyl-CoA hydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.7   1.8   9.3e-23   4.8e-20       3     248 ..     109     360 .]     108     360 .] 0.87

  Alignments for each domain:
  == domain 1    score: 69.7 bits;  conditional E-value: 9.3e-23
   TIGR03189   3 vwlerdgkllrlrlarpka.nivdaamiaalraalgealeaaalravlldaegphfsfgasve....eh..mpdqcaamlkslhklviemldspvpilvavrgqclggglevaaagnllfaapdaklgqpeiklgvfapa.ascllpervgkvaaedllysgrsidgaegariglvdavaedpeaaalayfdehlaklsasslrfavraarlgvvervkakiaevealyleelmathdaveglnaflekrpaaw 248
                 v ler+g++  + l  p++ n +   m  +++    e   a  lrav++   g  fs g  ++     h   p++ a++++ +++l   + + pvpi+ a+ g  +g gl  a+a ++ +aap+aklg   + lg+      + +lp  vg  +a  +l +   ++++++ r glv ++ ed  +aal    +++a ++  + r++v++ r++    +   +   ea    +  at +  eg++++ ekr   w
  MMETSP1137-20121227|5625_1 109 VQLERKGTVAVMTLNSPRTlNAMTEPMGKCVSHIAKELAAAEWLRAVVVTGSGQAFSAGGDLQwlleRHadSPQRNAKIMREFYELFLCVRKLPVPIIAAINGPAIGAGLCFALACDVRIAAPKAKLGMTFVGLGLHPGMgGTHFLPSIVGPQVAARMLLTAEVLSSEQALRDGLVASIDEDCVQAALXM-ANQMASQAPVASRLCVQTLRMKQDRDLEMALV-READSQAQSYATAELAEGVQSLREKRKPVW 360
                 6689999999999999986478888888889988888889999****************9864222255335999************************************************************9976515779*****99999999999***************************86.567788888888********998777666554.4777788899****************9888 PP

>> TIGR03200  dearomat_oah: 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.5   0.0   4.9e-19   2.5e-16      39     209 ..     118     287 ..     107     304 .. 0.96

  Alignments for each domain:
  == domain 1    score: 57.5 bits;  conditional E-value: 4.9e-19
   TIGR03200  39 awiildnpkqynsyttdmvkaiilafrrassdrdvaavvftavgdkafctggntkeyaeyyagnpqeyrqymrlfndmvsailgcdkpvicrvngmrigggqeigmaadlsvaqdlakfgqagpkhgsaaiggatdflplmigceqamvsgtlcepfsahkakrlgiivdv 209
                 a ++l+ p+  n+ t  m k++    ++ +++  + avv t+ g +af +gg+ +   e +a+ pq   + mr f ++  ++     p+i+ +ng  ig g    +a+d+ +a   ak+g +    g  +  g t flp ++g + a     + e  s+ +a r g+++ +
  MMETSP1137-20121227|5625_1 118 AVMTLNSPRTLNAMTEPMGKCVSHIAKELAAAEWLRAVVVTGSG-QAFSAGGDLQWLLERHADSPQRNAKIMREFYELFLCVRKLPVPIIAAINGPAIGAGLCFALACDVRIAAPKAKLGMTFVGLGLHPGMGGTHFLPSIVGPQVAARMLLTAEVLSSEQALRDGLVASI 287
                 5689**************************************99.69****************************************************************************************************9999**************999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (360 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       103  (0.0251097); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         8  (0.00195027); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.35u 0.15s 00:00:00.50 Elapsed: 00:00:00.47
# Mc/sec: 1010.98
//
Query:       MMETSP1137-20121227|5626_1  [L=203]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (203 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        74  (0.01804); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.14s 00:00:00.33 Elapsed: 00:00:00.56
# Mc/sec: 470.07
//
Query:       MMETSP1137-20121227|5629_1  [L=281]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (281 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        59  (0.0143832); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.18s 00:00:00.41 Elapsed: 00:00:00.34
# Mc/sec: 1090.85
//
Query:       MMETSP1137-20121227|5630_1  [L=448]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.3e-05   21.2   0.1      0.084    9.5   0.0    3.1  2  TIGR02160 PA_CoA_Oxy5: phenylacetate-CoA oxygenase/reductase, PaaK subunit


Domain annotation for each model (and alignments):
>> TIGR02160  PA_CoA_Oxy5: phenylacetate-CoA oxygenase/reductase, PaaK subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.5   0.0     2e-05     0.084      27     136 ..     122     247 ..     118     253 .. 0.61
   2 !    7.2   0.0   9.8e-05       0.4     209     258 ..     376     427 ..     361     442 .. 0.84

  Alignments for each domain:
  == domain 1    score: 9.5 bits;  conditional E-value: 2e-05
   TIGR02160  27 laedyrfepGqhltlkaeldGeelrrsysicdavad.geirvavkkieGGlfs.....twaneeiraGdtlevmaPqG...rftskldaer........akhyvavaaGsGitPilaivktvlaaep 136
                 l++d ++epG  l++ +e +G+ l+  y++ +a ++  +i v  ++i+          ++a  ++r+   +  +a qG    f+ + +++          +h v+v++G G+ P++  v+  +++  
  MMETSP1137-20121227|5630_1 122 LEHDVNYEPGHVLAIEVEWEGKVLKGPYTVTRADTSrRSIDVIYRVISDASTPvagdeKHAAIGVRKTTLFSKLA-QGdraAFGGSFHVPIargisskgVEHVVLVSSGVGVGPMIGFVEQCMQQWH 247
                 778899999999999999999999999999876543145556556665443320001122333344433333332.2211123333333336666777689*****************999988755 PP

  == domain 2    score: 7.2 bits;  conditional E-value: 9.8e-05
   TIGR02160 209 eaflcGPaalvddaedal.kalGvdsekvhlel.fttddePgrevrrevedp 258
                 ++++ G  ++v++ ++al + +Gv++e+v  e  f  +  P++e+ + +++p
  MMETSP1137-20121227|5630_1 376 HFHMIGNGGMVNEWRQALvEEVGVSEERVTTETyFGHKTAPVTEAVHAIASP 427
                 67899*********99985789*********972556689*99999988865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (448 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        52  (0.0126767); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.14s 00:00:00.47 Elapsed: 00:00:00.59
# Mc/sec: 1002.22
//
Query:       MMETSP1137-20121227|5631_1  [L=341]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (341 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        47  (0.0114578); expected 82.0 (0.02)
Passed bias filter:                       44  (0.0107265); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.15s 00:00:00.37 Elapsed: 00:00:00.38
# Mc/sec: 1184.43
//
Query:       MMETSP1137-20121227|5632_1  [L=369]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-06   25.9   0.0    2.1e-06   25.4   0.0    1.2  1  TIGR01250 pro_imino_pep_2: proline-specific peptidases
    1.1e-05   22.8   0.0    2.3e-05   21.7   0.0    1.5  2  TIGR02427 protocat_pcaD: 3-oxoadipate enol-lactonase
     0.0077   13.5   0.0      0.011   13.0   0.0    1.1  1  TIGR03695 menH_SHCHC: 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase
  ------ inclusion threshold ------
      0.011   13.2   0.0      0.021   12.3   0.0    1.4  1  TIGR01738 bioH: putative pimeloyl-BioC--CoA transferase BioH
      0.034   11.3   0.0      0.052   10.7   0.0    1.2  1  TIGR03611 RutD: pyrimidine utilization protein D


Domain annotation for each model (and alignments):
>> TIGR01250  pro_imino_pep_2: proline-specific peptidases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.4   0.0   2.5e-09   2.1e-06      14     126 ..      91     200 ..      79     213 .. 0.82

  Alignments for each domain:
  == domain 1    score: 25.4 bits;  conditional E-value: 2.5e-09
   TIGR01250  14 vlftkvkeegekikllvlHGGPgssheyleslkellkegvevilYDQLGsgkSdqPddsdeklltidrfvdEleevrekLaldkfyllgqSwGglLaqeYalkyqqhlkglii 126
                 + + + ++    +k++  HG P+  h     +k++ +   + i+ D +G g Sd+P      +  +++f + +++v+   +++k+  +++ wG++++  Ya k ++++ +l++
  MMETSP1137-20121227|5632_1  91 IAYYEAGDPTSTTKIIFTHGSPSRAHIWRYFTKDICHL-GHCIMADNVGFGDSDKPPVRYGVIDMCQYFTAYVDAVAP--NAEKIIFVAHDWGAMMTFDYAAKHKDKVIALTM 200
                 455566667779*************9655555555555.678999***********8866666677899******987..6899999*******************9998876 PP

>> TIGR02427  protocat_pcaD: 3-oxoadipate enol-lactonase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.7   0.0   2.8e-08   2.3e-05       4     109 ..      93     200 ..      90     205 .. 0.89
   2 ?   -2.7   0.0       0.8   6.6e+02     208     250 ..     321     365 ..     312     366 .. 0.74

  Alignments for each domain:
  == domain 1    score: 21.7 bits;  conditional E-value: 2.8e-08
   TIGR02427   4 yrlegaeadkpvlvlinSLGtdlrlwdkvlealtkdfrvlryDkrGHGlSdvpegpysiedladdvlallDal..giekaavcGlSlGGliaqaLaarrpdrvealvl 109
                 y   g+ ++   ++++    +  ++w+  ++ + +  + ++ D+ G G Sd p + y++ d+ +  +a +Da+  ++ek+ ++    G +++   aa++ d+v al +
  MMETSP1137-20121227|5632_1  93 YYEAGDPTSTTKIIFTHGSPSRAHIWRYFTKDICHLGHCIMADNVGFGDSDKPPVRYGVIDMCQYFTAYVDAVapNAEKIIFVAHDWGAMMTFDYAAKHKDKVIALTM 200
                 4445555577889999999999*************************************************99445899999999******************99876 PP

  == domain 2    score: -2.7 bits;  conditional E-value: 0.8
   TIGR02427 208 Ppe..lvreiadlvpgarfaeieeaaHlpnleqpeafaallrdfl 250
                 Pp+  ++ +  ++ ++  ++++  + H ++ + p  +a+++++++
  MMETSP1137-20121227|5632_1 321 PPDsvHAARFKSAFSKLDYVVLGAGNHFSQEDYPTLLAQTMAKHI 365
                 566223345567777888888888999999999999999988886 PP

>> TIGR03695  menH_SHCHC: 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   0.0   1.3e-05     0.011       3     101 ..     103     200 ..     101     210 .. 0.88

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 1.3e-05
   TIGR03695   3 pvlvlLHGflgskedwqalieeleekfsvlalDLpgHGkskslkekeakdfeeaaqellkellekl.kiekviLvGYSlGGRialalaleaperleglil 101
                 + +++ HG  + ++ w+ +++ + +  ++++ D +g G+s+++    ++ + +++q+ ++ +++   + ek+i v    G+ +  ++a+++++++ +l +
  MMETSP1137-20121227|5632_1 103 TKIIFTHGSPSRAHIWRYFTKDICHLGHCIMADNVGFGDSDKP--PVRYGVIDMCQYFTAYVDAVApNAEKIIFVAHDWGAMMTFDYAAKHKDKVIALTM 200
                 689********************9999**************99..789*********7777777667999***********************9777654 PP

>> TIGR01738  bioH: putative pimeloyl-BioC--CoA transferase BioH
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   2.5e-05     0.021       4      97 ..     102     202 ..      99     210 .. 0.78

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 2.5e-05
   TIGR01738   4 vkklvLihGWglnaevfadlveeLsahftlslvDLPGyGdsae....lralsl....aevaeailaqapakaiwlGWsLGGLvalhlalthpdkvrsLvlva 97 
                 ++k++  hG    a++++  ++++    +  + D  G+Gds +       +++     + ++a++ +a++  i++    G ++    a++h dkv +L +  
  MMETSP1137-20121227|5632_1 102 TTKIIFTHGSPSRAHIWRYFTKDICHLGHCIMADNVGFGDSDKppvrYGVIDMcqyfTAYVDAVAPNAEK-IIFVAHDWGAMMTFDYAAKHKDKVIALTMFE 202
                 5789999*****************999999999******9754222244566511114456666666665.799***********************99875 PP

>> TIGR03611  RutD: pyrimidine utilization protein D
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   6.3e-05     0.052      15     114 ..     104     204 ..      94     214 .. 0.83

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 6.3e-05
   TIGR03611  15 vvvlssGLGGsgsywapqlevleqefrvvvyDhrGtgrspeelaedysiaalaadvlelldal..diekahvvGhalGgliglelalrkperlaklvlinaW 114
                 +++++ G    ++ w    + + +  + ++ D+ G g s +  + +y++ ++ +  ++ +da+  + ek+ +v h  G++++++ a ++ +++  l++  ++
  MMETSP1137-20121227|5632_1 104 KIIFTHGSPSRAHIWRYFTKDICHLGHCIMADNVGFGDSDK-PPVRYGVIDMCQYFTAYVDAVapNAEKIIFVAHDWGAMMTFDYAAKHKDKVIALTMFEGF 204
                 56666677677776766666666777889999999998765.5899**************98755899**************************99998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (369 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        92  (0.0224281); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.30u 0.12s 00:00:00.42 Elapsed: 00:00:00.43
# Mc/sec: 1132.65
//
Query:       MMETSP1137-20121227|5633_1  [L=388]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      1e-48  164.2   4.9    1.3e-48  163.9   3.4    1.1  1  TIGR00817 tpt: Tpt phosphate/phosphoenolpyruvate translocator
    1.2e-10   39.1  11.8    8.1e-10   36.4   7.8    2.1  1  TIGR00950 2A78: carboxylate/amino acid/amine transporter
    0.00019   19.0  11.2    0.00023   18.8   4.6    2.7  2  TIGR03340 phn_DUF6: phosphonate utilization associated putative membrane protein


Domain annotation for each model (and alignments):
>> TIGR00817  tpt: Tpt phosphate/phosphoenolpyruvate translocator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  163.9   3.4   9.5e-52   1.3e-48       5     296 ..      87     383 ..      83     387 .. 0.90

  Alignments for each domain:
  == domain 1    score: 163.9 bits;  conditional E-value: 9.5e-52
   TIGR00817   5 llfllwyvlnvyFnivnkkllklf....hypvlktlvslavgvllellswss.ilkkrlkiskallklllpvaivhtighvtsnvslskvavSfthtikalepifsvvlskfflgrefpltlylsLlpivlGvalasltelsfnllgflsamisniefvarnifsKkiltkk.......sldklnlyalisililfllspiafiveglklltreflqaiskvnvlklvtvslvaalgifHlyqqvafqllervspltysvgNvlKRvvvIvvSilffetkisflqvlGvilaiaGvflYskvka 296
                  +f+ wy+ n y+ni nk  lk+      yp+++ +++l vgvl++l+ w+     k++k+ k  +  +lpv+++ +  h +s  +ls+ avSf  ++ka ep+f +v+s f+ gr++  + +l L+p+++Gv las++el f +++++sa i+n+   ++    Kk++          s+   n +al +i+++++ +p  ++ eg k    +f++  +k+n + + t+++   l  f ly+ +a+ ++++  ++t sv+N+ KRv+vI   +l++++ + +++ lG  + i Gv+lYs + +
  MMETSP1137-20121227|5633_1  87 AYFAFWYLGNYYYNIANKMCLKAAggknGYPMTIGVLQLGVGVLYALFLWAApDARKTPKVTKDDIVKMLPVGFCAMGAHCFSVFALSAGAVSFGQIVKAAEPAFAAVISTFLYGRSISTAKWLCLIPVIGGVILASVKELDFAWAALISACIANLFAAFKGAENKKLMDAPgikdrigSV--GNQFALTTIISFLFGLPLLILKEGHKWG--GFVEL-AKSNSIVA-TNLITSGL-YFYLYNELATLTIKKTNAVTQSVANTAKRVIVIIGVALVLGESLDPIKLLGCSIGIGGVMLYSLIDK 383
                 68***************9999985333369*******************9873799*****************************************************************************************************************976666754333..37899999999*9999999999999864..68888.77776544.34444555.99***************************9998888***************************9876 PP

>> TIGR00950  2A78: carboxylate/amino acid/amine transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.4   7.8   5.9e-13   8.1e-10      19     263 ..     118     375 ..     105     376 .. 0.75

  Alignments for each domain:
  == domain 1    score: 36.4 bits;  conditional E-value: 5.9e-13
   TIGR00950  19 yfavlrrlifallllLpllrlr.......nslkrllrllllgalqlgvfyvllflavkkltvaiaalllvlaPlyvtllsdllekervrkkkllAavlalaGivlllsdgnlsislaGlllgllsgisfAlgtvlakrlvkkegle.llqftgfvvlliGall........llpfalllgpnlqalpatslqwlallyLgligtllayflynkglk....evdasaasilalleplvallLgllilgetlslvqliggalilaav 263
                 +++ ++ l +++l  L+l+ ++       + + ++ ++l +g+  +g+   + ++a     v++  ++ +  P++++++s  l  + ++  k+l ++ ++ G v+l s ++l++ +a+l+ + ++++ +A+     k+l+   g + ++  +g  ++++  ++        l++    + + ++ l+  +++   +++  li ++l + lyn  ++    + +a++ s+ ++++ +  ++   l+lge l++++l+g ++ +++v
  MMETSP1137-20121227|5633_1 118 MTIGVLQLGVGVLYALFLWAAPdarktpkVTKDDIVKMLPVGFCAMGAH-CFSVFALSAGAVSFGQIVKAAEPAFAAVISTFLYGRSISTAKWLCLIPVIGG-VILASVKELDFAWAALISACIANLFAAFKGAENKKLMDAPGIKdRIGSVG-NQFALTTIIsflfglplLILKEGHKWGGFVELA--KSNS--IVATNLITSGLYFYLYNELATltikKTNAVTQSVANTAKRVIVIIGVALVLGESLDPIKLLGCSIGIGGV 375
                 6778889999999999999999999998766777777777777777765.566679999*************************9*********99998888.*************************************9877542233333.344444333110000003333333333333332..2222..467779999999*****9875212166788888888888887776667899***********99887776 PP

>> TIGR03340  phn_DUF6: phosphonate utilization associated putative membrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.1     0.082   1.1e+02     178     232 ..      82     138 ..      49     149 .. 0.76
   2 !   18.8   4.6   1.7e-07   0.00023      95     280 ..     184     377 ..     158     378 .. 0.80

  Alignments for each domain:
  == domain 1    score: 0.1 bits;  conditional E-value: 0.082
   TIGR03340 178 lylaiqflaaglvllllylkrrkraiveear.qilasatlggll..igsaYalvlyAm 232
                  +  i ++a  + l  +y +  ++  +++a  ++ + +t+g l   +g  Yal l+A 
  MMETSP1137-20121227|5633_1  82 DFALIAYFAF-WYLGNYYYNIANKMCLKAAGgKNGYPMTIGVLQlgVGVLYALFLWAA 138
                 5666888888.88888888888888888775144566666665511567799999996 PP

  == domain 2    score: 18.8 bits;  conditional E-value: 1.7e-07
   TIGR03340  95 laRslPvlvaiaatlllgeeLsalaWlGillivlGllvlglskkaqsrrkalkwalvaalitaiYsviDk......avalevaasssallylaiqflaaglvllllylkrrkraiveearqilasat...lgglligsaYalvlyAmtllp.valvvalrevsivlavllgill.lnekvtlkrllgvviivaGlvv 280
                 +  + P + a+ +t+l+g+++s+ +Wl + + v+G ++l++ k+ +++ +al  a +a l+ a     +k       ++ ++ +  +     +i  ++ gl+ll+l    +    ve a+++  +at   ++gl       l+ + +++++ v++ va +   ++  v++g++l l+e     +llg +i ++G+++
  MMETSP1137-20121227|5633_1 184 VKAAEPAFAAVISTFLYGRSISTAKWLCL-IPVIGGVILASVKELDFAWAALISACIANLFAAFKGAENKklmdapGIKDRIGSVGNQFALTTIISFLFGLPLLILKEGHKWGGFVELAKSNSIVATnliTSGLYFYLYNELATLTIKKTNaVTQSVANTAKRVI--VIIGVALvLGESLDPIKLLGCSIGIGGVML 377
                 33445**********************87.5677778999999**********99999999999887777777779999999999999999999999999**999988877777777776665554422256777777778999999999877777776666655..667776538999999************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (388 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       173  (0.0421745); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.36u 0.16s 00:00:00.52 Elapsed: 00:00:00.61
# Mc/sec: 839.54
//
Query:       MMETSP1137-20121227|5634_1  [L=453]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (453 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        69  (0.0168211); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.16s 00:00:00.47 Elapsed: 00:00:00.34
# Mc/sec: 1758.56
//
Query:       MMETSP1137-20121227|5635_1  [L=264]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.8e-45  150.2   0.0    1.3e-44  149.8   0.0    1.1  1  TIGR00636 PduO_Nterm: ATP:cob(I)alamin adenosyltransferase


Domain annotation for each model (and alignments):
>> TIGR00636  PduO_Nterm: ATP:cob(I)alamin adenosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  149.8   0.0   3.1e-48   1.3e-44       1     170 [.      64     247 ..      64     248 .. 0.92

  Alignments for each domain:
  == domain 1    score: 149.8 bits;  conditional E-value: 3.1e-48
   TIGR00636   1 ytktGDkGktklaggsrvsKdserveayGtvDElnsflGvalskl.....keeelkeelekiqndlfdlgadlatksekk........kit.eekvkfleeridkyreeleelkkFvlPGGtkaaaalhvaRtvaRRaERevvkllkeeeinekvlvylNRlSdllfvlArvvnkrkgkeevlw 170
                 yt+tGD G+ +l++g+r  Kd+ + +a+G+ DEln+++G++++          +l+ +l ++q  l d+g+ +at+ +++         ++ + + + le +id++ +el++lk+F+lP G + a++lh+aR+v+RRaER+vv l+ + e +++v vy+NRlSd+lfv+Ar++ +r+g++ev +
  MMETSP1137-20121227|5635_1  64 YTRTGDGGSSSLFSGERRRKDDAVFAALGHTDELNAAIGLVRAVCaeagsPLGQLHMQLGEVQSRLIDVGSAIATPPSTSqtarvartAFDgDGEAALLEGWIDAMDAELPQLKTFILPAGGQLASTLHLARAVCRRAERAVVPLVLAGECEKSVEVYVNRLSDYLFVAARFASHRTGETEVPY 247
                 8*****************************************977666655679*********************98777788666553332457889********************************************************************************999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (264 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       101  (0.0246221); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.23u 0.19s 00:00:00.42 Elapsed: 00:00:00.47
# Mc/sec: 741.39
//
Query:       MMETSP1137-20121227|5636_1  [L=368]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (368 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       115  (0.0280351); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.16s 00:00:00.44 Elapsed: 00:00:00.40
# Mc/sec: 1214.30
//
Query:       MMETSP1137-20121227|5637_1  [L=577]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (577 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        68  (0.0165773); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.14s 00:00:00.50 Elapsed: 00:00:00.48
# Mc/sec: 1586.62
//
Query:       MMETSP1137-20121227|5639_1  [L=403]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (403 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       401  (0.0977572); expected 82.0 (0.02)
Passed bias filter:                       97  (0.023647); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.16s 00:00:00.55 Elapsed: 00:00:00.44
# Mc/sec: 1208.90
//
Query:       MMETSP1137-20121227|5640_1  [L=63]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (63 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        79  (0.0192589); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.18s 00:00:00.28 Elapsed: 00:00:00.40
# Mc/sec: 207.88
//
Query:       MMETSP1137-20121227|5641_1  [L=70]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        78  (0.0190151); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.36
# Mc/sec: 256.65
//
Query:       MMETSP1137-20121227|5642_1  [L=581]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.1e-06   22.9   0.0      1e-05   22.4   0.0    1.1  1  TIGR03229 benzo_1_2_benA: benzoate 1,2-dioxygenase, large subunit
  ------ inclusion threshold ------
       0.03   12.2   0.0      0.063   11.2   0.0    1.5  1  TIGR02377 MocE_fam_FeS: Rieske [2Fe-2S] domain protein, MocE subfamily
       0.03   12.3   0.0      0.063   11.3   0.0    1.5  1  TIGR02378 nirD_assim_sml: nitrite reductase [NAD(P)H], small subunit


Domain annotation for each model (and alignments):
>> TIGR03229  benzo_1_2_benA: benzoate 1,2-dioxygenase, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.4   0.0   7.4e-09     1e-05      30     119 ..     101     191 ..      80     200 .. 0.80

  Alignments for each domain:
  == domain 1    score: 22.4 bits;  conditional E-value: 7.4e-09
   TIGR03229  30 emkyifegnwiylahesqipnkndyyttklgrqpiliarnkdgelnalinacshrgamlcrhk.rgnkatytcpfhgwtfnnsgkllkvkd 119
                 +m  ++  +w  la  +q ++ +      lg   +l      +   +  + cshr a l+  + + + +++ cp+hgwtf+  g+  k+ +
  MMETSP1137-20121227|5642_1 101 QMARLWAEKWWPLAFSAQTSKLAPQSVWLLGVPLVLWWDHVAAAWRCTRDQCSHRLAPLSEGRiQTDTGCIECPYHGWTFDGAGACSKIPQ 191
                 57788888899999999999999888888898888888888899999************9866255677899************9999865 PP

>> TIGR02377  MocE_fam_FeS: Rieske [2Fe-2S] domain protein, MocE subfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   4.6e-05     0.063      37      71 ..     146     182 ..     138     195 .. 0.82

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 4.6e-05
   TIGR02377  37 yatdglcthekvhladglvedte..vecpkhagafdy 71 
                  +t + c+h  + l++g ++ ++  +ecp h  +fd 
  MMETSP1137-20121227|5642_1 146 RCTRDQCSHRLAPLSEGRIQTDTgcIECPYHGWTFDG 182
                 599**************99876445*******99984 PP

>> TIGR02378  nirD_assim_sml: nitrite reductase [NAD(P)H], small subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   4.6e-05     0.063      36      83 ..     145     188 ..     139     219 .. 0.82

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 4.6e-05
   TIGR02378  36 vyAiqnlcPhkrafvlsrGlvgdaegelvvacPlhkrkfeLedGkcle 83 
                 ++ + + c h+  ++ls+G +++++   ++ cP+h + f+  +G+c +
  MMETSP1137-20121227|5642_1 145 WRCTRDQCSHR-LAPLSEGRIQTDT--GCIECPYHGWTFD-GAGACSK 188
                 66788999999.889******9988..79*********98.4666654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (581 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       113  (0.0275475); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.41u 0.17s 00:00:00.57 Elapsed: 00:00:00.51
# Mc/sec: 1503.64
//
Query:       MMETSP1137-20121227|5643_1  [L=400]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (400 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       114  (0.0277913); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.13s 00:00:00.42 Elapsed: 00:00:00.42
# Mc/sec: 1257.04
//
Query:       MMETSP1137-20121227|5644_1  [L=1458]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.2e-17   61.0   7.4    2.3e-16   57.7   5.1    2.5  1  TIGR03921 T7SS_mycosin: type VII secretion-associated serine protease mycosin
    9.3e-07   25.8   0.7    1.5e-06   25.1   0.5    1.2  1  TIGR03895 protease_PatA: cyanobactin maturation protease, PatA/PatG family


Domain annotation for each model (and alignments):
>> TIGR03921  T7SS_mycosin: type VII secretion-associated serine protease mycosin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.7   5.1   1.1e-19   2.3e-16      12     261 ..     770    1036 ..     765    1048 .. 0.77

  Alignments for each domain:
  == domain 1    score: 57.7 bits;  conditional E-value: 1.1e-19
   TIGR03921   12 GagvtVAViDtGvd.rhPrLpgev.aGgDlve............sgdged.dcd......ghGTlvAglIAarpaegsGfvGvAPdakilpirqtskafedkeeksavgdletlAkairrAa.....d.sgAkVINiSevacl.saksaadeselgaAvkyalekdvvvvAaagnegqdgsktvvyPAay....pgVlaVgsidrsgepssfslagpwvdvaApgenlvsls..pggdglasavgespleGtSfAaplVsgvAaLvrskfpeltaaqvirrlea 261 
                  G+gv V V DtG++ +h++ +++  + +  v+             g+    dc       ghGT vAg+ A+ +      +G+A  a+i  ++ +++            + +++ +++ +A+     + +g  V  + + +      +++ +++ ++  ++ ++++v   ++agn+ +d+ +  ++PA++      V++Vg++  + ++ s+s  g  vdv Apg+ ++s++  p+ +g+  + g    +GtS+AaplV gv aL+ +++p  t+  + +++ +
  MMETSP1137-20121227|5644_1  770 GEGVHVFVFDTGINwAHRDFTEAGdDSKSRVDlsyhalkhsacvPGQLSMfDCLdtaagrGHGTHVAGIAAGLK------YGLATCARIHIVKLSESSDY---------TFASIERGVNWALlyhafNvQGKFVKGVPQRSVAiASLGTVRNENYNRLFRKLVDNGVATAVSAGNDDNDACQ--ASPASVgggaSAVVTVGATSYDDSKGSYSNYGSCVDVWAPGTAIASADgqPQPNGQFPRDGYRVKSGTSMAAPLVGGVLALLSQAYPYSTPLFLKNKVRS 1036
                  9*******************9987666655555556676666443333335664566777*************8......*********99998877666.........4444444444444111113134444455554444455567777777888888**************9999977..999997422256**********************************9988888888888889999**********************9999877776665 PP

>> TIGR03895  protease_PatA: cyanobactin maturation protease, PatA/PatG family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.1   0.5   7.4e-10   1.5e-06      83     176 ..     914    1018 ..     899    1028 .. 0.76

  Alignments for each domain:
  == domain 1    score: 25.1 bits;  conditional E-value: 7.4e-10
   TIGR03895   83 klcqenniLivaaaGndgc.eClhvPaal....psvlavGAmdadGrplefsnwGeaykeqGilApGenilgak.........pggetvrksGtslAtavvtgvaalL 176 
                  ++  +n +    +aGnd   +C   Pa++    ++v++vGA + d    ++sn+G       + ApG  i +a+         p+++ + ksGts+A+++v gv alL
  MMETSP1137-20121227|5644_1  914 RKLVDNGVATAVSAGNDDNdACQASPASVgggaSAVVTVGATSYDDSKGSYSNYGSCVD---VWAPGTAIASADgqpqpngqfPRDGYRVKSGTSMAAPLVGGVLALL 1018
                  556678888778889976527******99443346********************9764...6777777766632222222226788899**************9976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1458 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       110  (0.0268162); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.89u 0.16s 00:00:01.05 Elapsed: 00:00:00.80
# Mc/sec: 2405.50
//
Query:       MMETSP1137-20121227|5645_1  [L=393]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0076   13.7   1.3      0.013   12.9   0.9    1.3  1  TIGR03929 T7_esaA_Nterm: type VII secretion protein EsaA


Domain annotation for each model (and alignments):
>> TIGR03929  T7_esaA_Nterm: type VII secretion protein EsaA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.9   0.9   3.1e-06     0.013     109     176 ..     284     352 ..     276     370 .. 0.82

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 3.1e-06
   TIGR03929 109 pekvtlqykvnakgnaelkeeaekeaediledlNkklvdlYlasilqnlqnaqknve.aivekeaefqs 176
                 p +  + y+ ++  n   + ++e+ +++   + N  + ++Yl+s++  + + ++ ++ ++ +ke+e ++
  MMETSP1137-20121227|5645_1 284 PVNHRIIYQLQDVFNLLPNLNVEELVKAFAVKTNDMMLAVYLSSVIRSVIALHNLINnKLHNKEKEAIK 352
                 55667899****************************************999999886245667766554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (393 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       201  (0.0490005); expected 82.0 (0.02)
Passed bias filter:                      114  (0.0277913); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.32u 0.17s 00:00:00.49 Elapsed: 00:00:00.56
# Mc/sec: 926.28
//
Query:       MMETSP1137-20121227|5647_1  [L=271]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (271 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        70  (0.0170648); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.14s 00:00:00.37 Elapsed: 00:00:00.30
# Mc/sec: 1192.30
//
Query:       MMETSP1137-20121227|5648_1  [L=438]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (438 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       104  (0.0253535); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.15s 00:00:00.47 Elapsed: 00:00:00.48
# Mc/sec: 1204.40
//
Query:       MMETSP1137-20121227|5649_1  [L=530]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (530 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       105  (0.0255973); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.16s 00:00:00.52 Elapsed: 00:00:00.50
# Mc/sec: 1399.08
//
Query:       MMETSP1137-20121227|5650_1  [L=269]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.5e-27   91.9   0.0    1.2e-26   91.4   0.0    1.1  1  TIGR00095 TIGR00095: RNA methyltransferase, RsmD family
      1e-05   23.6   0.0    2.3e-05   22.5   0.0    1.5  2  TIGR02469 CbiT: precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit
    1.3e-05   22.7   0.0    1.7e-05   22.2   0.0    1.1  1  TIGR03534 RF_mod_PrmC: protein-(glutamine-N5) methyltransferase, release factor-specific
    2.9e-05   21.1   0.0    3.9e-05   20.7   0.0    1.1  1  TIGR00536 hemK_fam: methyltransferase, HemK family


Domain annotation for each model (and alignments):
>> TIGR00095  TIGR00095: RNA methyltransferase, RsmD family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.4   0.0   1.1e-29   1.2e-26      32     191 ..      77     246 ..      64     248 .. 0.82

  Alignments for each domain:
  == domain 1    score: 91.4 bits;  conditional E-value: 1.1e-29
   TIGR00095  32 tRPtt..drVreslFnilrke..i.vgakvLdlfaGsgalglEALsRgakkvvfveqdkkvaktlkeNlstlklsk..eqatvlndaeralavlakketvfdiiylDPPfevklleailelllenkilnekalivveeeee.eelptspetlel..lkqkkyGktklely 191
                  RPt   + Vre+lF+++ +   + + ak LdlfaGsg +glEALsRg   v+fv+ + k + t+keN + l  ++  ++ + + ++ +a +      ++++++ + PP+e+  + +++++l++  +l e++l+v+e++ e    pt++   +l  l++++yG+t l+ly
  MMETSP1137-20121227|5650_1  77 ARPTStyGCVREALFSMVYPSgvLrDSAKALDLFAGSGVIGLEALSRGMGGVTFVDFSPKCTSTIKENCERLGFEGvgHIVEARVEELLATPERFGAVGPYQLVTMTPPYEEVVYADLIDALCKSPLLGEDTLVVIEYPVElGIFPTTLDSGRLigLRNRRYGRTVLALY 246
                 588752268*******9987533524679*******************************************9887113444444444444444455569*****************************************6666777776666236999*******998 PP

>> TIGR02469  CbiT: precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0       1.9     2e+03      82      99 ..      54      71 ..      43      75 .. 0.74
   2 !   22.5   0.0   2.3e-08   2.3e-05      17      78 ..     100     161 ..      96     174 .. 0.80

  Alignments for each domain:
  == domain 1    score: -3.1 bits;  conditional E-value: 1.9
   TIGR02469 82 eedsleeadavfvgGsgk 99
                ++ds++e ++  + G+++
  MMETSP1137-20121227|5650_1 54 KADSVRELQRLSITGGSA 71
                567788999998888765 PP

  == domain 2    score: 22.5 bits;  conditional E-value: 2.3e-08
   TIGR02469  17 lkkgdvllDiGaGtGsvtieaarlvpkgrvyaierneealelieeNlrrfgvsni.eivegda 78 
                 l++ +++lD  aG+G +++ea  + + g v+ ++ +++  ++i+eN++r+g++ + +ive+ +
  MMETSP1137-20121227|5650_1 100 LRDSAKALDLFAGSGVIGLEALSR-GMGGVTFVDFSPKCTSTIKENCERLGFEGVgHIVEARV 161
                 5667799*************9765.556789*******************8876525666644 PP

>> TIGR03534  RF_mod_PrmC: protein-(glutamine-N5) methyltransferase, release factor-specific
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.2   0.0   1.7e-08   1.7e-05      89     166 ..     103     186 ..      86     197 .. 0.80

  Alignments for each domain:
  == domain 1    score: 22.2 bits;  conditional E-value: 1.7e-08
   TIGR03534  89 klkvlDlgtGsGaIalalakelpdakviavDiseeAlkvarkNakrlglke.veflksdlleal......eekgkfdlivsNPPY 166
                 ++k lDl +GsG+I+l  +++     v+ vD+s++  ++ ++N++rlg +   +++++ + e l       + g + l++  PPY
  MMETSP1137-20121227|5650_1 103 SAKALDLFAGSGVIGLEALSR-GMGGVTFVDFSPKCTSTIKENCERLGFEGvGHIVEARVEELLatperfGAVGPYQLVTMTPPY 186
                 4699************97776.7789************************97566666664444444444566779999999999 PP

>> TIGR00536  hemK_fam: methyltransferase, HemK family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.7   0.0   3.8e-08   3.9e-05     116     192 ..     104     186 ..      86     196 .. 0.84

  Alignments for each domain:
  == domain 1    score: 20.7 bits;  conditional E-value: 3.8e-08
   TIGR00536 116 khilDlgtGsGcIal.alAleipnaeviavDistdalavaeeNaeklkleerveliqsnlleslakq.......kidlivsNPPY 192
                  + lDl+ GsG I+l al+  +    v+ vD s++  + ++eN e+l++e+  +++  ++ e la          ++l++  PPY
  MMETSP1137-20121227|5650_1 104 AKALDLFAGSGVIGLeALSRGMG--GVTFVDFSPKCTSTIKENCERLGFEGVGHIVEARVEELLATPerfgavgPYQLVTMTPPY 186
                 5789***********66666666..999***********************9999998876666655556777778888888888 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (269 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        51  (0.012433); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.23u 0.16s 00:00:00.39 Elapsed: 00:00:00.32
# Mc/sec: 1109.53
//
Query:       MMETSP1137-20121227|5651_1  [L=386]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.8e-16   57.5   0.0    4.9e-16   56.8   0.0    1.4  1  TIGR00093 TIGR00093: pseudouridine synthase


Domain annotation for each model (and alignments):
>> TIGR00093  TIGR00093: pseudouridine synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.8   0.0   1.2e-19   4.9e-16      48     159 ..     188     304 ..     157     306 .. 0.90

  Alignments for each domain:
  == domain 1    score: 56.8 bits;  conditional E-value: 1.2e-19
   TIGR00093  48 tddgelqhrlthpekevektYlvqv...egsvtdedlealrkGvkledektk.paklklikepelktklrvtlteGrnrqvrRlta.avglevlrLvRvrigdvslegLeeGewreL 159
                  ++g+++  l  p+ ++e+ Y vq+      +++++l+++++G+ ++d++   +  ++++++ e    l++ l eG+ r+vrR+++ ++g++v +L+R ++g  ++  L++Ge +e+
  MMETSP1137-20121227|5651_1 188 HNSGQFARMLELPDAKIERLYEVQLvtgSRGIDQQMLHEIEAGIVFADGTRLrKIDVRVVSQGERRATLTMRLREGKKREVRRIWEeHFGFRVRKLQRRAYGPFQIGLLDPGELKEV 304
                 5899*******************973223469*****************99867889***9999999*****************9648************************99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (386 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       152  (0.0370551); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.29u 0.16s 00:00:00.44 Elapsed: 00:00:00.38
# Mc/sec: 1340.73
//
Query:       MMETSP1137-20121227|5652_1  [L=171]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0049   13.5   0.0     0.0056   13.3   0.0    1.1  1  TIGR03279 cyano_FeS_chp: putative FeS-containing Cyanobacterial-specific oxidoreductase


Domain annotation for each model (and alignments):
>> TIGR03279  cyano_FeS_chp: putative FeS-containing Cyanobacterial-specific oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   0.0   1.4e-06    0.0056     244     311 ..      15      83 ..       7     119 .. 0.87

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 1.4e-06
   TIGR03279 244 kviaqvealqkefqrklgsrfawladewyliageklpsraayedypqlenG.vGsirsfleeldkaael 311
                 ++i+ ++a+ +  +r++      l  +  l+a+e+    a+y+d+ +  nG v si sfl +l+++a+ 
  MMETSP1137-20121227|5652_1  15 HTIECIDAVAESSRRTMXDSRQLLQAQHELVADEEQRISARYKDLTKRANGcVSSIXSFLRHLQEQAHA 83 
                 5788889999999999999999999999**********************97899*********99865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (171 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       114  (0.0277913); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.19u 0.16s 00:00:00.35 Elapsed: 00:00:00.25
# Mc/sec: 902.81
//
Query:       MMETSP1137-20121227|5653_1  [L=206]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (206 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        64  (0.0156021); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.16s 00:00:00.36 Elapsed: 00:00:00.33
# Mc/sec: 823.93
//
Query:       MMETSP1137-20121227|5654_1  [L=222]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (222 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       123  (0.0299854); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.13s 00:00:00.32 Elapsed: 00:00:00.32
# Mc/sec: 915.67
//
Query:       MMETSP1137-20121227|5655_1  [L=144]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.031   12.1   0.0       0.05   11.5   0.0    1.5  1  TIGR00333 nrdI: nrdI protein


Domain annotation for each model (and alignments):
>> TIGR00333  nrdI: nrdI protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   1.2e-05      0.05      69      97 ..     115     143 ..      77     144 .] 0.85

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 1.2e-05
   TIGR00333  69 ellrGviasGnkvfGdnfalagdvlskkl 97 
                  l+  v+ sG+kvfG  f+ + + l +kl
  MMETSP1137-20121227|5655_1 115 RLVDSVMKSGDKVFGSDFSASLNELQRKL 143
                 48889****************99999997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (144 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       281  (0.0685032); expected 82.0 (0.02)
Passed bias filter:                      181  (0.0441248); expected 82.0 (0.02)
Passed Vit filter:                        19  (0.00463189); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.19u 0.18s 00:00:00.37 Elapsed: 00:00:00.41
# Mc/sec: 463.57
//
Query:       MMETSP1137-20121227|5656_1  [L=298]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.3e-90  300.3   4.8    2.7e-90  300.1   3.3    1.0  1  TIGR01830 3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase
    2.9e-73  244.3   4.6    3.3e-73  244.1   3.2    1.0  1  TIGR01829 AcAcCoA_reduct: acetoacetyl-CoA reductase
    1.9e-53  179.4   4.9    2.3e-53  179.1   3.4    1.0  1  TIGR01832 kduD: 2-deoxy-D-gluconate 3-dehydrogenase
      5e-53  177.7   6.2    6.4e-53  177.4   4.3    1.1  1  TIGR01831 fabG_rel: putative 3-oxoacyl-(acyl-carrier-protein) reductase
    3.6e-52  175.0   8.1    4.7e-52  174.7   5.6    1.0  1  TIGR03206 benzo_BadH: 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase
    1.7e-47  159.8   5.8    5.9e-47  158.0   4.0    1.7  1  TIGR02415 23BDH: acetoin reductases
    1.1e-44  150.5   3.2    1.2e-43  147.0   2.2    1.9  1  TIGR01963 PHB_DH: 3-hydroxybutyrate dehydrogenase
    1.2e-37  127.7   6.1    2.8e-37  126.4   4.2    1.6  1  TIGR03971 SDR_subfam_1: oxidoreductase, SDR family
    1.6e-28   97.4   2.2    2.5e-27   93.5   1.5    2.0  1  TIGR02685 pter_reduc_Leis: pteridine reductase
    1.9e-25   87.1   8.9    3.3e-25   86.4   6.2    1.4  1  TIGR02632 RhaD_aldol-ADH: rhamnulose-1-phosphate aldolase/alcohol dehydrogenase
    6.5e-23   79.1   7.1    2.3e-22   77.3   4.9    1.7  1  TIGR03325 BphB_TodD: cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase
    1.5e-10   38.7   0.1      2e-10   38.3   0.0    1.1  1  TIGR01500 sepiapter_red: sepiapterin reductase
    0.00053   17.4   0.1    0.00065   17.1   0.1    1.2  1  TIGR01289 LPOR: light-dependent protochlorophyllide reductase


Domain annotation for each model (and alignments):
>> TIGR01830  3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  300.1   3.3   8.4e-93   2.7e-90       1     238 [.      54     293 ..      54     294 .. 0.98

  Alignments for each domain:
  == domain 1    score: 300.1 bits;  conditional E-value: 8.4e-93
   TIGR01830   1 alvtGasrgiGkaiakklakegakvviterskeekaeelaeelkeagvkaaavkldvsdeeevkelveeveeelg.eidilvnnAGitrDklllrmkeedwdevikvnLkgvfnvtkavlkkmikkrsGriinissvvgllGnagqanYaasKaGligltkslakElasrnitvnavaPGfietdmteklsekvkkkileqiplkrlgkpeevaaavafLasd.easyitGqvlkvdGGl 238
                 ++vtG+srg+Gkaia++l keg++vv++++ ++++ae+++ee+k  g++ +av++d+s +e + +l+++++e+++  +++lvnnAGitrD+l+lrmke++w++vi++nL+gvf  ++a++k m+k+r+Griin++svvg  Gn+gqanYaa+K+G+i++t ++a+E++ r++tvnavaPGfi++dm ++++ ++ ++++++ip++rlgkpeeva +v++La d +a yitG+ l++dGGl
  MMETSP1137-20121227|5656_1  54 CIVTGGSRGLGKAIALALGKEGCRVVVNYAASADAAEAVVEEIKGLGGDGVAVQADMSTTEGIASLFKATSEAFDsPVEVLVNNAGITRDTLVLRMKEKQWNDVIDTNLNGVFFASQAAAKVMLKNRKGRIINMASVVGRFGNVGQANYAAAKGGVIAMTMTMAREFGPRGVTVNAVAPGFIDSDMSAAVPAEILESVKKNIPVGRLGKPEEVAGLVKYLALDpSAMYITGHCLNIDGGL 293
                 58**********************************************************************99857************************************************************************************************************************************************973688************8 PP

>> TIGR01829  AcAcCoA_reduct: acetoacetyl-CoA reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  244.1   3.2   1.1e-75   3.3e-73       2     240 ..      53     293 ..      52     295 .. 0.96

  Alignments for each domain:
  == domain 1    score: 244.1 bits;  conditional E-value: 1.1e-75
   TIGR01829   2 valvtGglgGiGtaickrlakdGykvvanvapneerakewlqekevegfdvavvkadvssfeeakaavakveae.lGpvdvlvnnaGitrdavfkkmtkeqWeevidtnlnsvfnvtrpviegmlergfGriinissvnGlkGqfGqanysaakaGliGftkalaqegakkgvtvnviaPGyiatemvkavredvlkkivaqiPvkrlgkpeeiaaavaflaseeag.yvtGatlsvnGGl 240
                 v +vtGg++G+G+ai+ +l k+G++vv n+a+ +++a+++ +e +  g d + v+ad+s++e  ++ ++  +++   pv+vlvnnaGitrd+++ +m+++qW++vidtnln+vf   +   + ml++  Griin++sv G  G +Gqany+aak G+i +t+++a+e   +gvtvn++aPG+i+ +m +av++++l+++ ++iPv+rlgkpee+a +v +la + ++ y+tG+ l+++GGl
  MMETSP1137-20121227|5656_1  53 VCIVTGGSRGLGKAIALALGKEGCRVVVNYAASADAAEAVVEEIKGLGGDGVAVQADMSTTEGIASLFKATSEAfDSPVEVLVNNAGITRDTLVLRMKEKQWNDVIDTNLNGVFFASQAAAKVMLKNRKGRIINMASVVGRFGNVGQANYAAAKGGVIAMTMTMAREFGPRGVTVNAVAPGFIDSDMSAAVPAEILESVKKNIPVGRLGKPEEVAGLVKYLALDPSAmYITGHCLNIDGGL 293
                 789*****************************************99999999**************999887662589************************************************************************************************************************************************996544************8 PP

>> TIGR01832  kduD: 2-deoxy-D-gluconate 3-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  179.1   3.4   7.2e-56   2.3e-53       4     244 ..      50     292 ..      47     295 .. 0.92

  Alignments for each domain:
  == domain 1    score: 179.1 bits;  conditional E-value: 7.2e-56
   TIGR01832   4 eGkvalvtGantGlGqgiavglaeaGadivgvgise...lsetqekvealGrkflslkadladeeaakalvdeaveeag.kidilvnnaGiirredavefsekdwddvlnvnlkavfllsqavakkllkqGrkgkiiniasllsfqGGirvpsytasksavaGltkllanewakkginvnaiaPGyletnntealradekrnaaileriPagrwGepedlagaavflassas.dyvnGailavdGG 244
                 +G v +vtG ++GlG++ia++l + G+ +v    ++   ++   e+++ lG    +++ad++ +e++++l + + e+++  +++lvnnaGi r    + + ek+w+dv+++nl+ vf+ sqa+ak +lk+  kg+iin+as++   G +  + y+a+k +v+ +t ++a e+  +g+ vna+aPG+++++ ++a+ a+    +++ + iP gr G+pe++ag + +la + s  y++G+ l++dGG
  MMETSP1137-20121227|5656_1  50 DGPVCIVTGGSRGLGKAIALALGKEGCRVVVNYAASadaAEAVVEEIKGLGGDGVAVQADMSTTEGIASLFKATSEAFDsPVEVLVNNAGITRDTLVLRMKEKQWNDVIDTNLNGVFFASQAAAKVMLKNR-KGRIINMASVVGRFGNVGQANYAAAKGGVIAMTMTMAREFGPRGVTVNAVAPGFIDSDMSAAVPAEIL--ESVKKNIPVGRLGKPEEVAGLVKYLALDPSaMYITGHCLNIDGG 292
                 68899***********************9975444300034456788889***************************9868***********************************************997.9**************************************************************99765..6799*********************9876527***********9 PP

>> TIGR01831  fabG_rel: putative 3-oxoacyl-(acyl-carrier-protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  177.4   4.3     2e-55   6.4e-53       2     238 ..      55     293 ..      54     294 .. 0.95

  Alignments for each domain:
  == domain 1    score: 177.4 bits;  conditional E-value: 2e-55
   TIGR01831   2 lvtgasrgigraialklaadgfeiavhyrsdradaeesvaairaqggnarllkfdvadrvavrevleadiaehgayy.gvvlnagiardaafpalseedwdavietnldgfynvihplvmpmirarkggriitlasvsgvmgnrgqvnysaakagligatkalavelakrkitvnciapglidtemvaevekdlkeal.klvpmkrvgkaeevaalaaflmsd.daayvtrqvisvnggm 238
                 +vtg srg+g+aial l  +g  + v y +++ +ae++v++i+  gg++  ++ d++  + + ++++a  ++  +    +v nagi+rd+    + e++w+ vi+tnl+g +   +     m++ rk grii +asv g  gn gq ny+aak g+i  t ++a e+  r +tvn +apg+id++m a v+ ++ e++ k +p+ r+gk+eeva+l+ +l  d +a y+t   ++++gg+
  MMETSP1137-20121227|5656_1  55 IVTGGSRGLGKAIALALGKEGCRVVVNYAASADAAEAVVEEIKGLGGDGVAVQADMSTTEGIASLFKATSEAFDSPVeVLVNNAGITRDTLVLRMKEKQWNDVIDTNLNGVFFASQAAAKVMLKNRK-GRIINMASVVGRFGNVGQANYAAAKGGVIAMTMTMAREFGPRGVTVNAVAPGFIDSDMSAAVPAEILESVkKNIPVGRLGKPEEVAGLVKYLALDpSAMYITGHCLNIDGGL 293
                 79******************************************************************999877655156899******************************************99.6**************************************************************9998887257*******************9884688***********97 PP

>> TIGR03206  benzo_BadH: 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  174.7   5.6   1.5e-54   4.7e-52       5     249 ..      53     294 ..      50     295 .. 0.95

  Alignments for each domain:
  == domain 1    score: 174.7 bits;  conditional E-value: 1.5e-54
   TIGR03206   5 vaivtgggggiggaicrrfaeegakvav.ldlnaeaaekvaaairekggkaeavavditdrasvdaavaaaeeal.gpvdvlvnnagwdvlkpflktekaewerliainltgalymhhavlkgmverkagrivniasdaarvgssgeavyaackgglvafsktlarelarhgitvnvvcpgptdtalledvkseaekpeklieaftraiplgrlgkpddlagailflasd.daafitgqvlsvsgglt 249
                 v+ivtgg+ g+g ai + +++eg++v v +  +a+aae v ++i+  gg+  av++d++  + +     a+ ea+  pv+vlvnnag       l+ ++ +w+ +i  nl g ++   a +k m++ ++gri+n+as  +r g  g+a yaa kgg++a++ t+are+  +g+tvn v pg  d+         a+ p  ++e+  + ip+grlgkp+++ag + +la d  a +itg  l + ggl+
  MMETSP1137-20121227|5656_1  53 VCIVTGGSRGLGKAIALALGKEGCRVVVnYAASADAAEAVVEEIKGLGGDGVAVQADMSTTEGIASLFKATSEAFdSPVEVLVNNAGITRDTLVLRMKEKQWNDVIDTNLNGVFFASQAAAKVMLKNRKGRIINMASVVGRFGNVGQANYAAAKGGVIAMTMTMAREFGPRGVTVNAVAPGFIDSD------MSAAVPAEILESVKKNIPVGRLGKPEEVAGLVKYLALDpSAMYITGHCLNIDGGLA 294
                 78***********************99857889*******************************9999999998747************9999****************************************************************************************87764......46788999****************************9944779***********97 PP

>> TIGR02415  23BDH: acetoin reductases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  158.0   4.0   1.9e-49   5.9e-47       2     251 ..      53     293 ..      52     295 .. 0.93

  Alignments for each domain:
  == domain 1    score: 158.0 bits;  conditional E-value: 1.9e-49
   TIGR02415   2 valvtGaaqGiGkaiaerLakdGfavavadln.eetaketakelkekgtkavavkldvsdkseveeaveqaveklGe.ldvlvnnaGvalvtpileiteeeleklynvnvkgvlfGiqaaaekfkklkhkGkiinaasiagvegspelsaysstkfavrgltqtaakeLakkgitvnayaPGivktemreeideklaelagkeigekleefsseiklGresePedvaelvsflaseds.dyitGqsilvdGGl 251
                 v +vtG+++G+Gkaia  L k+G  v+v      ++a ++++e+k  g++ vav++d+s+ + + ++ + + e + + ++vlvnnaG++  t +l ++e++ + + + n++gv+f  qaaa+ + k + kG+iin as+ g  g+  ++ y+++k  v ++t t a+e+ ++g+tvna aPG ++ +m + + +++            e++ ++i +Gr  +Pe+va+lv +la + s  yitG  + +dGGl
  MMETSP1137-20121227|5656_1  53 VCIVTGGSRGLGKAIALALGKEGCRVVVNYAAsADAAEAVVEEIKGLGGDGVAVQADMSTTEGIASLFKATSEAFDSpVEVLVNNAGITRDTLVLRMKEKQWNDVIDTNLNGVFFASQAAAKVMLK-NRKGRIINMASVVGRFGNVGQANYAAAKGGVIAMTMTMAREFGPRGVTVNAVAPGFIDSDMSAAVPAEIL-----------ESVKKNIPVGRLGKPEEVAGLVKYLALDPSaMYITGHCLNIDGGL 293
                 689*************************9887467788899**********************************7549*****************************************987765.679**********************************************************999877654...........4567899*******************876527************9 PP

>> TIGR01963  PHB_DH: 3-hydroxybutyrate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  147.0   2.2   3.9e-46   1.2e-43       3     252 ..      53     293 ..      51     295 .. 0.92

  Alignments for each domain:
  == domain 1    score: 147.0 bits;  conditional E-value: 3.9e-46
   TIGR01963   3 valvtGaasGiglaiakelaaaGakvvvndle.eeaaeaaakeleeaggevlalkadvtkeeeiadlieavaaefgs.ldiLvnnAGiqhvapieefptekfekiiavnltsafhtiraalpimkkqgwGriiniasvhglvasafKsaYvaaKHglvGltKvlAlEvAetgitanaicPgyvrtpLvekqiadqaktrgiseeqvvkevllkkqptkrfvtveevaelalflasda.aaqitGqalsldgGw 252
                 v +vtG + G+g+aia +l ++G++vvvn +  ++aaea+ +e++  gg+ +a++ad++ +e ia+l +a+ ++f s +++LvnnAGi   + +    +++++ +i+ nl++ f +++aa + m k+  Griin+asv g  +   ++ Y aaK g++ +t ++A E    g+t+na++Pg+++  + ++ ++ +     i  e+v+     k+ p +r+ ++eeva+l+ +la d  a  itG  l++dgG 
  MMETSP1137-20121227|5656_1  53 VCIVTGGSRGLGKAIALALGKEGCRVVVNYAAsADAAEAVVEEIKGLGGDGVAVQADMSTTEGIASLFKATSEAFDSpVEVLVNNAGITRDTLVLRMKEKQWNDVIDTNLNGVFFASQAAAKVMLKNRKGRIINMASVVGRFGNVGQANYAAAKGGVIAMTMTMAREFGPRGVTVNAVAPGFIDSDMSAA-VPAE-----I-LESVK-----KNIPVGRLGKPEEVAGLVKYLALDPsAMYITGHCLNIDGGL 293
                 689**************************988688899999**********************************8648********************************************************************************************************9887543.2222.....1.24454.....56799****************98861668***********6 PP

>> TIGR03971  SDR_subfam_1: oxidoreductase, SDR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  126.4   4.2   8.8e-40   2.8e-37       2     264 ..      50     293 ..      49     294 .. 0.89

  Alignments for each domain:
  == domain 1    score: 126.4 bits;  conditional E-value: 8.8e-40
   TIGR03971   2 eGkvalitGaarGqGraeavrlaaeGadiiaidlceplsdvvtypaatredldetaklvealGrkvlarkadvrkleelravveegveefGr.ldvvvanaGvlsygrafelseeqWdtvldvnlkGvWktvkavvPalierknGGsiiivssvaglkalpglahyaaakhGlvgltktlanelaeygirvnsihPtsvdtamiepeamrelfakreeaaraflpalpvsglvepedvadvvawlasd.esryitGaqlavdaGa 264
                 +G v ++tG +rG G+a a++l +eG  ++           v+y+ a+ +  +  ++ +++lG   +a +ad+ + e + +  + + e f   ++v+v+naG+   + +  ++e+qW++v+d+nl+Gv+ + +a+  +++ ++  G ii ++sv g  +  g+a yaaak G++++t t+a+e ++ g+ vn++ P  +d  m +      + a   e++++  ++ pv  l +pe+va++v +la d  + yitG+ l++d G 
  MMETSP1137-20121227|5656_1  50 DGPVCIVTGGSRGLGKAIALALGKEGCRVV-----------VNYA-ASADAAEAVVEEIKGLGGDGVAVQADMSTTEGIASLFKATSEAFDSpVEVLVNNAGITRDTLVLRMKEKQWNDVIDTNLNGVFFASQAAAKVMLKNR-KGRIINMASVVGRFGNVGQANYAAAKGGVIAMTMTMAREFGPRGVTVNAVAPGFIDSDMSA-----AVPA---EILESVKKNIPVGRLGKPEEVAGLVKYLALDpSAMYITGHCLNIDGGL 293
                 799***********************6553...........4554.44555678899*********************************754***********************************************988.689*****************************************************99988.....2333...3444444567888888*************8825679*********996 PP

>> TIGR02685  pter_reduc_Leis: pteridine reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   93.5   1.5   7.9e-30   2.5e-27       2     264 ..      52     295 ..      51     298 .] 0.86

  Alignments for each domain:
  == domain 1    score: 93.5 bits;  conditional E-value: 7.9e-30
   TIGR02685   2 paalvtGaakriGrsiavklhqeGyrvvlhyrrsaeaasslaaelnaeransavvvkadlsnsa...sllssceeiidacfrafGrcdvlvnnasafyptpllrgdaeegaaekkslevqvaelfGsnaiaplllikafaqrqkgtraelrssnlsivnlvdamtdqpllgfslytmakealeGltrsaalelaslqirvngvapGl..sllpdampeevkeeyrrkvplgqreasaeqiadvviflv.skkakyitGtiikvdGGlsl 264
                 p+ +vtG+++ +G++ia +l +eG rvv+ y  sa+aa+++++e+     +  v v+ad+s ++   sl+++ +e  d+        +vlvnna     t +lr  +++             +++ +n    ++  +a a+ +      l++++  i+n++  +     +g + y+ ak  +  +t + a e+ ++++ vn+vapG+  s +  a+p e  e  ++ +p+g+     e++a  v +l   ++a yitG ++ +dGGl++
  MMETSP1137-20121227|5656_1  52 PVCIVTGGSRGLGKAIALALGKEGCRVVVNYAASADAAEAVVEEIKG-LGGDGVAVQADMSTTEgiaSLFKATSEAFDS------PVEVLVNNAGITRDTLVLRMKEKQ-----------WNDVIDTNLNGVFFASQAAAKVM------LKNRKGRIINMASVVGRFGNVGQANYAAAKGGVIAMTMTMAREFGPRGVTVNAVAPGFidSDMSAAVPAEILESVKKNIPVGRL-GKPEEVAGLVKYLAlDPSAMYITGHCLNIDGGLAI 295
                 99******************************************965.67889********987333455555554444......479*******99999999876555...........55667777666677776666655......56666779*************************************************8678999*****************986.56899******996379***************986 PP

>> TIGR02632  RhaD_aldol-ADH: rhamnulose-1-phosphate aldolase/alcohol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.4   6.2     1e-27   3.3e-25     414     597 ..      51     233 ..      34     295 .. 0.88

  Alignments for each domain:
  == domain 1    score: 86.4 bits;  conditional E-value: 1e-27
   TIGR02632 414 rrvalvtGgasGiGrevarrlvdeGahvvladl.daeaaeavaaelvdkfGadkavalkldvtdeeavkaafaevalayGG.vdivvnnaGiavskpleeteleeWdlnldilatGyflvareaarllrkqglggnlvfiasknavvakknalaysaakaaeahlvrllaielaelgirvntvaPd 597
                 + v +vtGg+ G+G+++a+ l +eG  vv+     a+aaeav +e+++  G   +va+++d+   e +++ f++ + a+   v+++vnnaGi+  + +   ++++W+  +d +  G f+ ++ aa+++ k    g ++ +as+ + + + ++  y+aak   + +  ++a e ++ g+ vn+vaP 
  MMETSP1137-20121227|5656_1  51 GPVCIVTGGSRGLGKAIALALGKEGCRVVVNYAaSADAAEAVVEEIKGLGG--DGVAVQADMSTTEGIASLFKATSEAFDSpVEVLVNNAGITRDTLVLRMKEKQWNDVIDTNLNGVFFASQAAAKVMLKNR-KGRIINMASVVGRFGNVGQANYAAAKGGVIAMTMTMAREFGPRGVTVNAVAPG 233
                 4699***********************999765156788999999995544..47899*********************754*********************************************99876.6799***********************************************96 PP

>> TIGR03325  BphB_TodD: cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.3   4.9   7.4e-25   2.3e-22       3     257 ..      49     295 ..      47     297 .. 0.84

  Alignments for each domain:
  == domain 1    score: 77.3 bits;  conditional E-value: 7.4e-25
   TIGR03325   3 lkdevvlvtggasglgralvdrfvaegarvav.....ldksaagleeleaahgdkvvgvegdvrllddhkeavarcveafgk.ldtlipnagiwdystalvdipddrideafdevfeinvkgyllavkaalpalv.asrgsviftvsnagfypngggalytaakhavvglvkelayelapy.vrvngvapgglstdlrglksldladksissvplgdllksvlpigrmadaeeytgayvffatrgdtvpltgavlnydgglgv 257
                  ++ v +vtgg+ glg+a+      eg rv v      d ++a +ee++   gd  v+v+ d+ + +      +   eaf   +++l++nagi   +  ++ + +    + +++v + n+ g ++a +aa  +++ + +g +i   s  g + n g a y+aak  v+ +   +a e++p+ v vn vapg + +d+      ++         l + +k+ +p+gr+ + ee +g   ++a    ++ +tg  ln dggl +
  MMETSP1137-20121227|5656_1  49 ADGPVCIVTGGSRGLGKAIALALGKEGCRVVVnyaasADAAEAVVEEIKGLGGDG-VAVQADMSTTEGIASLFKATSEAFDSpVEVLVNNAGITRDTL-VLRMKE----KQWNDVIDTNLNGVFFASQAAAKVMLkNRKGRIINMASVVGRFGNVGQANYAAAKGGVIAMTMTMAREFGPRgVTVNAVAPGFIDSDMSAAVPAEI---------L-ESVKKNIPVGRLGKPEEVAGLVKYLALDPSAMYITGHCLNIDGGLAI 295
                 567899***********************98733333577788899999888776.69*******9999999999999997449*********76443.344444....56889999*********999887655156788999999*********************************879************9865433332.........2.3345668*************************************976 PP

>> TIGR01500  sepiapter_red: sepiapterin reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.3   0.0   6.3e-13     2e-10       2     210 ..      53     249 ..      52     260 .. 0.84

  Alignments for each domain:
  == domain 1    score: 38.3 bits;  conditional E-value: 6.3e-13
   TIGR01500   2 lllvtGasrGfGrelaqelakrlkaegsvlvLlaRndeaLkeskaeieaevsalsvdlvsldleaakdvedllkaleesikkeeyerillinnaGtlgdvskrekelsDsknvqkyydsnvtslvvltsellkklkelqglektvvnlssLcaikpfkswalYCaskaaRdmffqvLaleek.edvkvLnYapGvlDtdmqsqvreeasd 210
                 +++vtG srG+G+++a  l k   +   v+v +a + +a     +ei+    +  v  v +d+++++++  l+ka  e          +l+nnaG   d+          k+ +   d+n+  +   +    k++   +  +  ++n++s+       + a Y a+k     +   +a e     v v   apG +D dm   v  e  +
  MMETSP1137-20121227|5656_1  53 VCIVTGGSRGLGKAIALALGK---EGCRVVVNYAASADAAEAVVEEIKG-LGGDGV-AVQADMSTTEGIASLFKATSEAFDS---PVEVLVNNAGITRDTLVLRM---KEKQWNDVIDTNLNGVFFASQAAAKVML--KNRKGRIINMASVVGRFGNVGQANYAAAKGGVIAMTMTMAREFGpRGVTVNAVAPGFIDSDMSAAVPAEILE 249
                 79***************9999...666788889***************8.455555.4568*************99987654...345899****9999865544...4789999999999998887777777765..567778********999999*********9988888899****988899999************99988877 PP

>> TIGR01289  LPOR: light-dependent protochlorophyllide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.1     2e-06   0.00065       5     124 ..      53     172 ..      49     235 .. 0.78

  Alignments for each domain:
  == domain 1    score: 17.1 bits;  conditional E-value: 2e-06
   TIGR01289   5 tviitgassglglaaakalvekgkwhvvmacrdlekaekaaksl.glpkdsytilkldlasldsvrk.fveqfresgrsldalvcnaavylpllkeplfsadgyelsvatnhlghfllsnll 124
                   i+tg s glg a a al ++g   vv      + ae + +++ gl  d    ++ d+++ + +   f ++  + + ++++lv na +   +l    +  ++++  + tn  g f+ s+  
  MMETSP1137-20121227|5656_1  53 VCIVTGGSRGLGKAIALALGKEGCRVVVNYAASADAAEAVVEEIkGLGGDG-VAVQADMSTTEGIASlFKATSEAFDSPVEVLVNNAGITRDTLVLR-MKEKQWNDVIDTNLNGVFFASQAA 172
                 679********************7777878889999999999984666665.56799******99872566777889***********998887654.455667777888888877776654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (298 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       189  (0.0460751); expected 82.0 (0.02)
Passed bias filter:                      118  (0.0287665); expected 82.0 (0.02)
Passed Vit filter:                        19  (0.00463189); expected 4.1 (0.001)
Passed Fwd filter:                        13  (0.00316919); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.41u 0.17s 00:00:00.57 Elapsed: 00:00:00.49
# Mc/sec: 802.71
//
Query:       MMETSP1137-20121227|5657_1  [L=160]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (160 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        53  (0.0129205); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.12s 00:00:00.30 Elapsed: 00:00:00.32
# Mc/sec: 659.95
//
Query:       MMETSP1137-20121227|5658_1  [L=426]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   1.1e-113  377.6   0.0   1.4e-113  377.3   0.0    1.0  1  TIGR00048 TIGR00048: 23S rRNA m2A2503 methyltransferase
    5.1e-05   21.0   0.0      9e-05   20.2   0.0    1.4  1  TIGR04038 tatD_link_rSAM: radical SAM protein, TatD family-associated
      7e-05   19.7   0.0    9.5e-05   19.2   0.0    1.2  1  TIGR03974 rSAM_six_Cys: SCIFF radical SAM maturase
    9.1e-05   19.7   0.0    0.00018   18.8   0.0    1.5  1  TIGR02495 NrdG2: anaerobic ribonucleoside-triphosphate reductase activating protein
    0.00011   19.7   0.0    0.00029   18.3   0.0    1.7  2  TIGR04100 rSAM_pair_X: radical SAM enzyme, TIGR04100 family
    0.00016   18.4   0.0    0.00024   17.8   0.0    1.1  1  TIGR00089 TIGR00089: radical SAM methylthiotransferase, MiaB/RimO family
    0.00048   17.4   0.0    0.00085   16.6   0.0    1.3  1  TIGR02493 PFLA: pyruvate formate-lyase 1-activating enzyme
     0.0012   16.0   0.1     0.0016   15.6   0.0    1.2  1  TIGR01579 MiaB-like-C: MiaB-like tRNA modifying enzyme
     0.0021   14.9   0.0     0.0065   13.3   0.0    1.8  2  TIGR03821 AblA_like_1: lysine-2,3-aminomutase-related protein
     0.0066   13.3   0.0      0.012   12.4   0.0    1.4  1  TIGR00238 TIGR00238: KamA family protein


Domain annotation for each model (and alignments):
>> TIGR00048  TIGR00048: 23S rRNA m2A2503 methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  377.3   0.0  3.4e-116  1.4e-113       4     350 ..      62     411 ..      59     417 .. 0.96

  Alignments for each domain:
  == domain 1    score: 377.3 bits;  conditional E-value: 3.4e-116
   TIGR00048   4 sekislldlelkelkeflkdlGekpfrakqlvkWlyekgkdsfedmtnlskdlreklkeefelralevaveqesaDgtkkyllkladgqtietvllkee.dratvCvssqvGCaleCtfCatakgGfkrnLeaseiidqvlkvkkivevteervsnvvlmGmGePllnlnevvkaleilnddvglgiskrritistsGvvpkidklad....kkldvalaisLhapndelrselvPinkkynletlleevrkyleksnkrvtfeyvllddvnDqvehaeeLaelLkgvkckvnLipfnpveeadyersseeridrfakvLkskgltvtirksrgddidaaCGqLrakkkedr 350
                  +k +l+ ++ kel+e++   Gek frakq+v W+y +g+++f+  +nl+  lr++lkee++l ++++++eq s Dgt+k l +ladgq ie+vl++ + +r t C+ssqvGCa++CtfCat++ GfkrnL a+ei +q+ + + ++   +er+snvv+mGmGeP+ n + v+ka + l +d+g  i++r+itist+Gvvp+i+++ad     kl+++laisLh+  +  rs ++P+n+ky+l++l++++++y+e+s++r++fe+ l+++ nD+v+ a+ L +lLkg++++vnLip np+ + d + ss   +d f + L  +g+  t+r  rg dida CGqL ++  +++
  MMETSP1137-20121227|5658_1  62 RPKYNLYAMDAKELEELILSWGEKKFRAKQIVDWVYVQGCSDFDSFKNLPLSLRKRLKEEISLGSMQIEEEQISRDGTQKRLWRLADGQLIESVLMPYDtKRRTACISSQVGCAMGCTFCATGQMGFKRNLSADEIFEQAARFATELRARDERLSNVVFMGMGEPFMNYDAVMKASKRLMTDLG--IGARHITISTVGVVPRIRDFADlcaaTKLEIKLAISLHSSSNVARSAIMPVNRKYDLKELVDACHYYVERSGRRISFEWALIAGQNDSVKEARALGKLLKGLHAHVNLIPLNPTRGFDGRPSSLPDADSFVHELGRYGVPATVRVRRGIDIDAGCGQLADSASKKK 411
                 5789*********************************************************************************************862679*******************************************************************************99..********************98555569**********************************************************************************************************************************65443333 PP

>> TIGR04038  tatD_link_rSAM: radical SAM protein, TatD family-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   0.0   2.2e-07     9e-05      17     124 ..     173     284 ..     163     315 .. 0.68

  Alignments for each domain:
  == domain 1    score: 20.2 bits;  conditional E-value: 2.2e-07
   TIGR04038  17 rCtlaCqfCikek...ekevkgyelklekepsveeviaai.kdlkkyeEvvFcGyGepllrlevvkevakaikek...ga.kvRvntdGlanlvhkrnilpelaglvdalsisLna 124
                  C + C+fC+  +   ++++   e+  +    +     ++ +  ++ ++vvF G Gep+++ ++v++ +k++ +    ga ++ + t G   ++ +   l   ++l  +l+isL +
  MMETSP1137-20121227|5658_1 173 GCAMGCTFCATGQmgfKRNLSADEIFEQAARFAT----ELrARDERLSNVVFMGMGEPFMNYDAVMKASKRLMTDlgiGArHITISTVGVVPRIRDFADLCAATKLEIKLAISLHS 284
                 599******9766433334433333333333333....33244566788*********************9988773333577888888777666655555555555556666655 PP

>> TIGR03974  rSAM_six_Cys: SCIFF radical SAM maturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   0.0   2.3e-07   9.5e-05      64     169 ..     132     236 ..      92     264 .. 0.76

  Alignments for each domain:
  == domain 1    score: 19.2 bits;  conditional E-value: 2.3e-07
   TIGR03974  64 eevkelkeegklftedayeelikevkkkrktvvkalclhvahdcnlackycfaeeGeykgeralmsaevgkkaldfliensgsrrnl.evdffG.GePlmnfdvvkel 169
                 e+++    +++l+   +  +li++v +  +t  ++ c+     c + c++c + +  +k  r+l + e+  +a  f  e  ++ + l +v f+G GeP mn+d v + 
  MMETSP1137-20121227|5658_1 132 EQISRDGTQKRLWRLAD-GQLIESVLMPYDTKRRTACISSQVGCAMGCTFCATGQMGFK--RNLSADEIFEQAARFATELRARDERLsNVVFMGmGEPFMNYDAVMKA 236
                 55555555555554433.344666666677888899**999**********77666665..******************98887777479999989*******99764 PP

>> TIGR02495  NrdG2: anaerobic ribonucleoside-triphosphate reductase activating protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.0   4.3e-07   0.00018      12     103 ..     160     261 ..     154     288 .. 0.73

  Alignments for each domain:
  == domain 1    score: 18.8 bits;  conditional E-value: 4.3e-07
   TIGR02495  12 DypgklaaviflqGCnlkCpyChNellealk..eseev..eleelleklkrrkglldgvvitG.GEpllqag..ladllrevkelgl...kvkldtngsnpr 103
                 D + ++a++    GC++ C +C   ++ +++   ++e+  +  ++  +l+ r + l+ vv+ G GEp +  +  ++   r + +lg+   ++ + t g  pr
  MMETSP1137-20121227|5658_1 160 DTKRRTACISSQVGCAMGCTFCATGQMGFKRnlSADEIfeQAARFATELRARDERLSNVVFMGmGEPFMNYDavMKASKRLMTDLGIgarHITISTVGVVPR 261
                 5566778888889**********955544441145555224467899***************99***99766433333344555665333577777777775 PP

>> TIGR04100  rSAM_pair_X: radical SAM enzyme, TIGR04100 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.0       3.2   1.3e+03      52      66 ..      65      79 ..      49      95 .. 0.57
   2 !   18.3   0.0     7e-07   0.00029      18     126 ..     174     282 ..     165     317 .. 0.66

  Alignments for each domain:
  == domain 1    score: -3.4 bits;  conditional E-value: 3.2
   TIGR04100 52 aaldkfdlskyeelv 66
                 +l ++d +++eel+
  MMETSP1137-20121227|5658_1 65 YNLYAMDAKELEELI 79
                344444555555554 PP

  == domain 2    score: 18.3 bits;  conditional E-value: 7e-07
   TIGR04100  18 CpcaCtfCirkekdgvgdsdslWlehePsleeilaaldkfdl......skyeelvfCGyGePlerldallevakyikekskl...kirintnGladlihgrktaeelkelvdavsisl 126
                 C+  CtfC            ++ ++++ s++ei ++  +f        +++ ++vf G GeP+++ da+++++k++     +   +i i t G++  i++ ++    ++l   ++isl
  MMETSP1137-20121227|5658_1 174 CAMGCTFCATG---------QMGFKRNLSADEIFEQAARFATelrardERLSNVVFMGMGEPFMNYDAVMKASKRLMTDLGIgarHITISTVGVVPRIRDFADLCAATKLEIKLAISL 282
                 55566666433.........344555555566655444332211111157899*********************99887554222677888887766665555444444444555555 PP

>> TIGR00089  TIGR00089: radical SAM methylthiotransferase, MiaB/RimO family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.0   5.8e-07   0.00024      70     181 ..      95     205 ..      74     210 .. 0.76

  Alignments for each domain:
  == domain 1    score: 17.8 bits;  conditional E-value: 5.8e-07
   TIGR00089  70 kivvaGClaqkekeel...lkekpevdivlgtqeverllelieeaeekekevveelekekleelprsrseeklrafikiqeGCdkkCtyCivpsaRGrerSrslekileevkelv 181
                  + v GC    + ++l   l++ ++ +i lg+ ++e  +e i++    +k +    + + +e++ ++  +++ +a+i+ q GC   Ct+C++ ++ G +r  s ++i e++++ +
  MMETSP1137-20121227|5658_1  95 WVYVQGCSDFDSFKNLplsLRKRLKEEISLGSMQIE--EEQISRDGT-QKRLWRLADGQLIESVLMPYDTKRRTACISSQVGCAMGCTFCATGQM-GFKRNLSADEIFEQAARFA 205
                 567788876555555322378888899999999988..566666444.44444455556899999999999********************9886.9999999999999998766 PP

>> TIGR02493  PFLA: pyruvate formate-lyase 1-activating enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0   2.1e-06   0.00085      24     193 ..     173     352 ..     166     359 .. 0.72

  Alignments for each domain:
  == domain 1    score: 16.6 bits;  conditional E-value: 2.1e-06
   TIGR02493  24 GcalrCqyChnpDtwklkggtevtveellkevkkykeflkas...gGGvtvsG.Gepllqaefvlellkavkk.egi...htaldtsGflkeltekldellektDL.vLldik..eldeekykkltgv....elektlefak.llakknkpiWiRyvlvPgytDseediealaelvkklknverve 193
                 Gca+ C +C+      +   ++++++e++++++++++ l+a+      v + G Gep +  ++v++  k + + +gi   h+++ t G ++++ +   +l   t L + l i   +  +    +++ v    +l++ ++  + ++++ +++i   + l+ g  Ds ++ +al +l+k l+   +v+
  MMETSP1137-20121227|5658_1 173 GCAMGCTFCATGQMGFK---RNLSADEIFEQAARFATELRARderLSNVVFMGmGEPFMNYDAVMKASKRLMTdLGIgarHITISTVGVVPRIRD-FADLCAATKLeIKLAISlhSSSNVARSAIMPVnrkyDLKELVDACHyYVERSGRRISFEWALIAGQNDSVKEARALGKLLKGLHA--HVN 352
                 9********96655444...5699***********9999887444355666666**********9987765543787777********9986555.777788887744455541144444455555442223566666666625788899999*******************999998874..444 PP

>> TIGR01579  MiaB-like-C: MiaB-like tRNA modifying enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   3.9e-06    0.0016     121     283 ..     145     312 ..      79     331 .. 0.71

  Alignments for each domain:
  == domain 1    score: 15.6 bits;  conditional E-value: 3.9e-06
   TIGR01579 121 eekeveefeevaprfeektr.afvkvqdGCnkaCsyCiIpfaRGrsrSvelekvleqvkalv......akgykEvvltGvn..lssYgedlenglslakLlekilkieglkriRlsSlepeevdeelleliasekklcphlHlslQsgsd...kvLkrmrRkytrddilklvekl 283
                 +  + + +e+v   +  k r a +  q GC   C++C+     G +r  +++++ eq+++++      ++  + vv  G+     +Y   +   +  ++L++++    g  +i +s + +     ++ +l a + kl+ +l +sl s+s+   + +   +Rky  ++++++++  
  MMETSP1137-20121227|5658_1 145 RLADGQLIESVLMPYDTKRRtACISSQVGCAMGCTFCATGQ-MGFKRNLSADEIFEQAARFAtelrarDERLSNVVFMGMGepFMNYDAVM---KASKRLMTDLG--IGARHITISTVGVVPRIRDFADLCA-ATKLEIKLAISLHSSSNvarSAIMPVNRKYDLKELVDACHYY 312
                 4444444455444455444438999************9765.6999***********9998722222245789999999852255666544...45567777776..58999*******9999999***999.556999******999983333455678999999988888754 PP

>> TIGR03821  AblA_like_1: lysine-2,3-aminomutase-related protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0      0.57   2.3e+02     137     164 ..      69      96 ..      64     117 .. 0.79
   2 !   13.3   0.0   1.6e-05    0.0065      87     170 ..     152     243 ..     125     344 .. 0.76

  Alignments for each domain:
  == domain 1    score: -1.7 bits;  conditional E-value: 0.57
   TIGR03821 137 lkqhpeinevilsGGdPLmakdeeldel 164
                   + +e++e+ils G+    + + +d++
  MMETSP1137-20121227|5658_1  69 AMDAKELEELILSWGEKKFRAKQIVDWV 96 
                 557789*******999888888888776 PP

  == domain 2    score: 13.3 bits;  conditional E-value: 1.6e-05
   TIGR03821  87 vpgllhkykg..rvlli.vkggCainCryCfrrhfpyqenkaskaewkealey...l.kqhpeinevilsG.GdPLmakdeeldelveelee 170
                 ++++l  y +  r+  i ++ gCa+ C +C   ++ +++n ++ + +++a ++   l + ++ +++v++ G G+P+m  d  +++  + + +
  MMETSP1137-20121227|5658_1 152 IESVLMPYDTkrRTACIsSQVGCAMGCTFCATGQMGFKRNLSADEIFEQAARFateLrARDERLSNVVFMGmGEPFMNYDAVMKASKRLMTD 243
                 5666666643114444416789******************99999999987762223134677899999888********999876555554 PP

>> TIGR00238  TIGR00238: KamA family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.4   0.0     3e-05     0.012     104     185 ..     152     240 ..     121     298 .. 0.65

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 3e-05
   TIGR00238 104 vpgllhrYvnr...alllvkesCaviCrYCfRrdFdakenpGnkkklekaldy....iaehdeleeilisG.GDplllkDkelekllkrl 185
                 ++ +l  Y ++   a +  + +Ca+ C +C   +   k n    + +e+a  +     a  + l+++++ G G+p++  D  ++   krl
  MMETSP1137-20121227|5658_1 152 IESVLMPYDTKrrtACISSQVGCAMGCTFCATGQMGFKRNLSADEIFEQAARFatelRARDERLSNVVFMGmGEPFMNYDAVMKAS-KRL 240
                 666666665432227889999**********9777777777777777776666211045567799****999*****999877543.333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (426 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       179  (0.0436373); expected 82.0 (0.02)
Passed bias filter:                      171  (0.041687); expected 82.0 (0.02)
Passed Vit filter:                        27  (0.00658216); expected 4.1 (0.001)
Passed Fwd filter:                        10  (0.00243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.40u 0.16s 00:00:00.56 Elapsed: 00:00:00.55
# Mc/sec: 1022.32
//
Query:       MMETSP1137-20121227|5659_1  [L=731]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (731 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       431  (0.105071); expected 82.0 (0.02)
Passed bias filter:                       42  (0.0102389); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.60u 0.13s 00:00:00.73 Elapsed: 00:00:00.80
# Mc/sec: 1206.05
//
Query:       MMETSP1137-20121227|5660_1  [L=292]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (292 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        68  (0.0165773); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.13s 00:00:00.36 Elapsed: 00:00:00.37
# Mc/sec: 1041.64
//
Query:       MMETSP1137-20121227|5661_1  [L=407]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.4e-29   99.0   0.0    9.4e-29   98.4   0.0    1.2  1  TIGR00436 era: GTP-binding protein Era
    2.6e-18   64.1   0.0    8.2e-18   62.4   0.0    1.6  1  TIGR03594 GTPase_EngA: ribosome-associated GTPase EngA
    2.7e-14   51.1   0.0      7e-14   49.8   0.0    1.7  1  TIGR00231 small_GTP: small GTP-binding protein domain
    8.8e-14   49.0   0.0    1.2e-13   48.5   0.0    1.1  1  TIGR03156 GTP_HflX: GTP-binding protein HflX
    8.2e-12   42.5   0.0    1.2e-11   41.9   0.0    1.2  1  TIGR03918 GTP_HydF: [FeFe] hydrogenase H-cluster maturation GTPase HydF
    1.5e-09   35.2   0.0      2e-09   34.8   0.0    1.1  1  TIGR02729 Obg_CgtA: Obg family GTPase CgtA
      4e-09   33.9   0.0    6.5e-09   33.2   0.0    1.2  1  TIGR00450 mnmE_trmE_thdF: tRNA modification GTPase TrmE
    5.1e-09   33.7   0.0    4.3e-07   27.4   0.0    2.3  2  TIGR03596 GTPase_YlqF: ribosome biogenesis GTP-binding protein YlqF
    3.7e-07   27.8   0.0    2.1e-06   25.4   0.0    2.1  1  TIGR03598 GTPase_YsxC: ribosome biogenesis GTP-binding protein YsxC
    7.7e-07   26.4   0.1     0.0016   15.5   0.0    2.1  2  TIGR03597 GTPase_YqeH: ribosome biogenesis GTPase YqeH
    2.6e-05   21.0   0.0    3.5e-05   20.5   0.0    1.1  1  TIGR00475 selB: selenocysteine-specific translation elongation factor
    0.00055   16.6   0.0    0.00086   16.0   0.0    1.2  1  TIGR00487 IF-2: translation initiation factor IF-2
    0.00088   16.4   0.0     0.0013   15.9   0.0    1.2  1  TIGR03680 eif2g_arch: translation initiation factor 2, gamma subunit
     0.0015   15.1   0.0      0.002   14.7   0.0    1.2  1  TIGR00437 feoB: ferrous iron transport protein B
     0.0052   14.9   0.0       0.25    9.4   0.0    2.5  1  TIGR02528 EutP: ethanolamine utilization protein, EutP
  ------ inclusion threshold ------
      0.034   11.6   0.0      0.073   10.5   0.0    1.5  1  TIGR03263 guanyl_kin: guanylate kinase
      0.034   10.1   0.1      0.063    9.3   0.1    1.4  1  TIGR00929 VirB4_CagE: type IV secretion/conjugal transfer ATPase, VirB4 family


Domain annotation for each model (and alignments):
>> TIGR00436  era: GTP-binding protein Era
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.4   0.0   3.9e-31   9.4e-29       3     269 ..     113     391 ..     111     392 .. 0.85

  Alignments for each domain:
  == domain 1    score: 98.4 bits;  conditional E-value: 3.9e-31
   TIGR00436   3 vailGrpnvGKSTLlNkllgqkisivSpkaqTTrnrisgiltegasq..iifiDtPGlhekkhklnellvkeirkalsevdlilfvvdsdeknke...delll.......eklqkl..kapvvlalnkldnk.ekdkllelidkeasllefk.eiveisalkgenveelkaiveaklregpfyypedyvtdqeerFkisEiiREkilkllkeEiPysvaveieekklnekgslkiaalilVe..resQKkiiiGkkgkkikaiGieaRkkleklfdakvflelfV 269
                   ++G++n+GKSTLlN ll   +sivS+k  TTr+++ + lte++++  + fiD PG   ++     ++ ++i +a++  +l l vvd+++k+     +++ll       ++ +++   +++vl+lnk+d    k+kll++ +  ++ + f   ++ +sa  g+ v++l+  +    + g++    d v +++   +++EiiR  i +  +eE+Py+++   +  ++  +g l+i  ++l +  + +    i+   +k++  + i+aR kl++ f+  v+l+l V
  MMETSP1137-20121227|5661_1 113 CCLIGPTNAGKSTLLNGLLRSSVSIVSEKIHTTRENMLAYLTEEKYKtqVQFIDAPGALGPHI---PAIRRAIWDAVRRANLALIVVDANDKHSArqcEQFLLqleavlvDQEKETgrRTQTVLVLNKVDLVkPKAKLLNMSEAFHKAFRFDwPCLMVSARDGSGVDTLRDWLLLMSKPGKWSVAPDVVHERPPVEIAAEIIRAEIFNSYREELPYIIKQRTIGWTELRNGDLRIDQQLLLPdsKRANAHRIV---TKRLPGVCIAARPKLAEAFGRPVHLFLTV 391
                 5789***************************************99876588******999874...67999*****************998765433566654111111144444422457899*******9788899999999999999999******************************************************************9999999999********9999722333333444...578999********************987 PP

>> TIGR03594  GTPase_EngA: ribosome-associated GTPase EngA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.4   0.0   3.4e-20   8.2e-18     167     340 ..     104     280 ..      53     292 .. 0.73

  Alignments for each domain:
  == domain 1    score: 62.4 bits;  conditional E-value: 3.4e-20
   TIGR03594 167 eeeeeeeepikiaiiGrpNvGKStLvNallgeervivsdiaGtTrDsidievevk..gkkylliDTAGirrkkkveekveklsvlrtl.kaieradvvllvlDategiseq..Dlkiag...li....leegk..alvivvNKwDlvkdekeleelkkeleeklkflkfapivfiSAltgkgveklle 340
                 + ee  ++ ++ ++iG  N+GKStL+N ll++  +ivs+   tTr+++   ++ +  ++++++iD  G              ++ r++  a++ra+++l+v+Da+++ s    ++ +++   ++    +e+g+   +v+v+NK+Dlvk +++l ++++ +++ ++f    p++++SA++g+gv++l +
  MMETSP1137-20121227|5661_1 104 APEE--SRILRCCLIGPTNAGKSTLLNGLLRSSVSIVSEKIHTTRENMLAYLTEEkyKTQVQFIDAPGALG-------PHIPAIRRAIwDAVRRANLALIVVDANDKHSARqcEQFLLQleaVLvdqeKETGRrtQTVLVLNKVDLVKPKAKLLNMSEAFHKAFRFD--WPCLMVSARDGSGVDTLRD 280
                 3333..5589************************************9988776652267799******643.......2334556664389*************976553311333332111331110344433358************************999985..8**************9976 PP

>> TIGR00231  small_GTP: small GTP-binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.8   0.0   2.9e-16     7e-14       4     160 ..     111     280 ..     108     284 .. 0.68

  Alignments for each domain:
  == domain 1    score: 49.8 bits;  conditional E-value: 2.9e-16
   TIGR00231   4 ikivivGhvdvGKstLlnsllknkisiteskp.gvtrdyvteqieedGktykvnllDTaG......qedfdairrlyvreverslevvdivil..vldveeglekqtkeiiheakk..kgvpiilvvnKiDlkd....dlktkvkslfaklnaepiielsaetgknidklfk 160
                  ++ ++G  ++GKstLln ll+ ++si++ k  ++ +++ +++ ee+  +++v+++D +G       + ++ai++++ r+  +++  vd +      + e+ l + +  + ++ k+    + ++lv+nK+Dl++     l  ++++ +a     p  ++sa++g+++d+l +
  MMETSP1137-20121227|5661_1 111 LRCCLIGPTNAGKSTLLNGLLRSSVSIVSEKIhTTRENMLAYLTEEKY-KTQVQFIDAPGalgphiPAIRRAIWDAVRRANLALIV-VDANDKhsARQCEQFLLQLEAVLVDQEKEtgRRTQTVLVLNKVDLVKpkakLLNMSEAFHKAFRFDWPCLMVSARDGSGVDTLRD 280
                 57899*************************985666677777666666.56*********99885533444677766555555554.444332001344444433333333433331235789************99545555555555555667*************9987 PP

>> TIGR03156  GTP_HflX: GTP-binding protein HflX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.5   0.0     5e-16   1.2e-13     185     347 ..     106     282 ..      99     285 .. 0.79

  Alignments for each domain:
  == domain 1    score: 48.5 bits;  conditional E-value: 5e-16
   TIGR03156 185 kksevptvalvGYTNaGKstllnaltkaev.laedklFATLdpttrrlklpee.eevlltDTVGFirkLPheLveaFkaTLeevaeadlllhvvDasdeeaeeqieaveevLeelgaeei.......pvllvlNkidkle.eeeleeleekkee.......avlvsAkkgegleeLleai 347
                 ++s++ +  l+G TNaGKstlln l +++v ++ +k+ +T + ++  l+ ++  ++v + D  G    L  ++ +  +a  + v++a+l l vvDa d++ ++q e+    Le + +++        +++lvlNk+d+++ +++l + +e  ++        ++vsA++g+g+++L++ +
  MMETSP1137-20121227|5661_1 106 EESRILRCCLIGPTNAGKSTLLNGLLRSSVsIVSEKIHTTRENMLAYLTEEKYkTQVQFIDAPG---ALGPHIPAIRRAIWDAVRRANLALIVVDANDKHSARQCEQFLLQLEAVLVDQEketgrrtQTVLVLNKVDLVKpKAKLLNMSEAFHKafrfdwpCLMVSARDGSGVDTLRDWL 282
                 57789999******************9876368999*****99999988776525889999999...57778888899**********************99999986555555544444444566699**********963333333333333355556689*************9865 PP

>> TIGR03918  GTP_HydF: [FeFe] hydrogenase H-cluster maturation GTPase HydF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.9   0.0   5.2e-14   1.2e-11       5     166 ..     108     285 ..     104     302 .. 0.72

  Alignments for each domain:
  == domain 1    score: 41.9 bits;  conditional E-value: 5.2e-14
   TIGR03918   5 aerlhialfGrrNaGKSsliNaltgqdvaivsdvpGtTtDpvekam.EllplGpvvliDTaGldDegeLGelRvektrevlektdlallvvdaeaele..eleee.......lleelke..kkipvivvlnkidlkeeeke....keklek..kkeeevvlvsakekegieelkealiel 166
                 +  l+  l+G +NaGKS+l+N l++ +v+ivs+   tT + +   + E +    v +iD +G     ++ ++R +   +++++++lal+vvda+ + +  ++e+        l+++ ke  +++ +++vlnk+dl++ +++    +e+ +k  +++ ++++vsa++++g+++l++ l+ +
  MMETSP1137-20121227|5661_1 108 SRILRCCLIGPTNAGKSTLLNGLLRSSVSIVSEKIHTTRENMLAYLtEEKYKTQVQFIDAPGALG-PHIPAIRRA-IWDAVRRANLALIVVDANDKHSarQCEQFllqleavLVDQEKEtgRRTQTVLVLNKVDLVKPKAKllnmSEAFHKafRFDWPCLMVSARDGSGVDTLRDWLLLM 285
                 55567899**************************99999887665427777889********754.466677754.56889**********9986654113444311111104444443226789***********999886554333333114556899*************9987655 PP

>> TIGR02729  Obg_CgtA: Obg family GTPase CgtA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.8   0.0   8.2e-12     2e-09     161     323 ..     114     281 ..     108     287 .. 0.83

  Alignments for each domain:
  == domain 1    score: 34.8 bits;  conditional E-value: 8.2e-12
   TIGR02729 161 glvGlpnaGkStllsavsaakpki.adYpFtTlvPnLGvvevee.eksfvlaDiPgliegasegagLGleFLkHiertrvllhlidlseedekdpvedl.eviekeLkkyseeLaekpe.lvvlnkidllee.eeleellkelkeel..ekkvlaisaltkegleellkk 323
                  l+G  naGkStll+ + ++   i ++   tT +  L  ++ e+ ++++ + D Pg +        +       + r+++ l ++d++++++   +e++  ++e+ L   ++e  ++++ ++vlnk+dl++  ++l ++ +++++++  + ++l++sa +++g+++l + 
  MMETSP1137-20121227|5661_1 114 CLIGPTNAGKSTLLNGLLRSSVSIvSEKIHTTRENMLAYLTEEKyKTQVQFIDAPGALGPHIP--AIRRAIWDAVRRANLALIVVDANDKHSARQCEQFlLQLEAVLVDQEKETGRRTQtVLVLNKVDLVKPkAKLLNMSEAFHKAFrfDWPCLMVSARDGSGVDTLRDW 281
                 69*************99887766516777899999999997766367888******9965544..69999*******************9988777776156888898888888777652789*******987899999999999998899**************99765 PP

>> TIGR00450  mnmE_trmE_thdF: tRNA modification GTPase TrmE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.2   0.0   2.7e-11   6.5e-09     212     332 ..     113     244 ..     107     258 .. 0.71

  Alignments for each domain:
  == domain 1    score: 33.2 bits;  conditional E-value: 2.7e-11
   TIGR00450 212 laivGktNvGKSSLlNallkkdraiVsdikGttRDvvEedleleGil..vkllDtAG.iReaadkvEklGiekslkaikeadlvlyvlDaskpltk...ddeli.......itlkkk..kkdlllvlNKiDLaele 332
                   ++G tN+GKS LlN ll+   +iVs+   ttR+ + + l  e ++  v+ +D  G +  +  ++ ++      +a+++a+l l v+Da+        +++l+       +++k +    + +lvlNK DL++ +
  MMETSP1137-20121227|5661_1 113 CCLIGPTNAGKSTLLNGLLRSSVSIVSEKIHTTRENMLAYLTEEKYKtqVQFIDAPGaLGPHIPAIRRA----IWDAVRRANLALIVVDANDKHSArqcEQFLLqleavlvDQEKETgrRTQTVLVLNKVDLVKPK 244
                 679**************************************99988633778***99445566666665....368999999999999997655331113444411111113333331145789********9433 PP

>> TIGR03596  GTPase_YlqF: ribosome biogenesis GTP-binding protein YlqF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.4   0.0   1.8e-09   4.3e-07     117     179 ..     109     176 ..     103     196 .. 0.84
   2 ?    4.5   0.0     0.017       4.2      47      92 ..     227     276 ..     174     288 .. 0.64

  Alignments for each domain:
  == domain 1    score: 27.4 bits;  conditional E-value: 1.8e-09
   TIGR03596 117 kairalvvGiPNvGKStliNrlakkkvakvgnkpgvTksqqwi.....klskeleLlDtPGilwpkle 179
                 + +r++ +G  N GKStl+N l++ +v  v +k   T+++        k++++++++D+PG l p++ 
  MMETSP1137-20121227|5661_1 109 RILRCCLIGPTNAGKSTLLNGLLRSSVSIVSEKIHTTRENMLAylteeKYKTQVQFIDAPGALGPHIP 176
                 6789**********************************997652222266789**********99875 PP

  == domain 2    score: 4.5 bits;  conditional E-value: 0.017
   TIGR03596  47 knkprlivlnkaDladpekt.kkwlkyfeek...gkkalavnakkkkkvk 92 
                 ++ ++++vlnk Dl++p+++  ++ + f++    +   l+v+a+++++v 
  MMETSP1137-20121227|5661_1 227 RRTQTVLVLNKVDLVKPKAKlLNMSEAFHKAfrfDWPCLMVSARDGSGVD 276
                 456789*********98754144555555321113456666666666655 PP

>> TIGR03598  GTPase_YsxC: ribosome biogenesis GTP-binding protein YsxC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.4   0.0   8.6e-09   2.1e-06      17     185 ..     109     282 ..      99     283 .. 0.74

  Alignments for each domain:
  == domain 1    score: 25.4 bits;  conditional E-value: 8.6e-09
   TIGR03598  17 klpeiafaGrSNvGKSsliNaLtnrkklartSktPGrTql.inffev....neelrlvDlPGYGyakvskeekekwqklieeYLekrenLkgvvllvDirhelkelDlellel...l.kea.....kipvlvvltKaDklkkselkkalkkvkkelkkeeekvevllfSslkkegieelkael 185
                 +    +++G  N+GKS+l+N L+++  ++ +S++   T++ +  +      ++++ ++D PG    +++  +++ w ++      +r+nL+ +v+    +h+ ++ ++ ll+l   l +++     ++++++vl+K+D +k +++  ++++  +++   + +  +l++S++++ g+++l+++l
  MMETSP1137-20121227|5661_1 109 RILRCCLIGPTNAGKSTLLNGLLRSS-VSIVSEKIHTTREnMLAYLTeekyKTQVQFIDAPGALGPHIPAIRRAIWDAV------RRANLALIVVDANDKHSARQCEQFLLQLeavLvDQEketgrRTQTVLVLNKVDLVKPKAKLLNMSEAFHKAF--RFDWPCLMVSARDGSGVDTLRDWL 282
                 56778******************877.99*****9999863334544333345899******98899999999999985......799999999999999999988887766422221221233336788999******998765555444433333..335799************999865 PP

>> TIGR03597  GTPase_YqeH: ribosome biogenesis GTPase YqeH
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   6.8e-06    0.0016     159     216 ..     114     171 ..      66     209 .. 0.77
   2 !    9.2   0.0   0.00054      0.13      75     148 ..     212     281 ..     186     291 .. 0.81

  Alignments for each domain:
  == domain 1    score: 15.5 bits;  conditional E-value: 6.8e-06
   TIGR03597 159 yvvGvtNVGKSsliNkllklnkgkkkvittSkfpgTTld.....lieipldkesvllDtpGii 216
                  ++G tN GKS+l+N ll+ +        +S+   TT +     l e + +++ + +D+pG +
  MMETSP1137-20121227|5661_1 114 CLIGPTNAGKSTLLNGLLRSSVSI-----VSEKIHTTREnmlayLTEEKYKTQVQFIDAPGAL 171
                 689***************876543.....3333333322111124555666688889999976 PP

  == domain 2    score: 9.2 bits;  conditional E-value: 0.00054
   TIGR03597  75 fdlegslikelkrfvkenkvllvvNKidllpksvklekikewlkkeakeeglkpvdillvsakkkkglkellel 148
                 + le  l+++ k+  ++ + +lv NK+dl+  + kl +++e  +k ++     +   l+vsa  + g+++l ++
  MMETSP1137-20121227|5661_1 212 LQLEAVLVDQEKETGRRTQTVLVLNKVDLVKPKAKLLNMSEAFHKAFRF----DWPCLMVSARDGSGVDTLRDW 281
                 66788888888999999***************99999999988887763....344677777777777777666 PP

>> TIGR00475  selB: selenocysteine-specific translation elongation factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   0.0   1.5e-07   3.5e-05      43     162 ..     151     283 ..     119     288 .. 0.76

  Alignments for each domain:
  == domain 1    score: 20.5 bits;  conditional E-value: 1.5e-07
   TIGR00475  43 aylpled..kvlgliDvPG....Hekflknal.agvggidaalLvvdadeGvka.qtkEHLavlkll........gi.kelivvltKaDrvdeeevkevEeelkeileeeeflknakivkvsAktGqGieeLkkelk 162
                 ayl+ e+  +++++iD+PG    H   ++ a+  +v  ++ al+vvda++   a q +  L+ l+ +        g   +++ vl+K+D v  + +k   ++ +++ +   f      ++vsA++G G++ L++ l+
  MMETSP1137-20121227|5661_1 151 AYLTEEKykTQVQFIDAPGalgpHIPAIRRAIwDAVRRANLALIVVDANDKHSArQCEQFLLQLEAVlvdqeketGRrTQTVLVLNKVDLVKPK-AK-LLNMSEAFHKAFRFD--WPCLMVSARDGSGVDTLRDWLL 283
                 899999877899*******998999999999856999***********99876526666665444331111111133145788*******9877.33.333334555555555..7788**************9875 PP

>> TIGR00487  IF-2: translation initiation factor IF-2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0   3.6e-06   0.00086      92     250 ..     115     287 ..     104     300 .. 0.70

  Alignments for each domain:
  == domain 1    score: 16.0 bits;  conditional E-value: 3.6e-06
   TIGR00487  92 imGhvDhGktsLLdsirktk..vaegeaGGitqhiGayqvekedkkkitflDtPGhea..f.tsmrar..GakvtDivvlvvaadDGvk.pqti......eai..ehakaan..vPiivainkiDkpeanpDrvkqelseyglvpeewGGetifvpvsalkgkgideLldaiLlqse 250
                 ++G  + Gk +LL+ + +    ++++       ++ ay  e++ k ++ f+D+PG       +  ra     + ++++++vv a+D    +q +      ea+  +  k+ +  +  ++++nk+D  + +   ++      +   +++  +   ++vsa+ g+g+d L d +Ll+s+
  MMETSP1137-20121227|5661_1 115 LIGPTNAGKSTLLNGLLRSSvsIVSEKIHTTRENMLAYLTEEKYKTQVQFIDAPGALGphIpAIRRAIwdAVRRANLALIVVDANDKHSaRQCEqfllqlEAVlvDQEKETGrrTQTVLVLNKVDLVKPKAKLLNM----SEAFHKAFRFDWPCLMVSARDGSGVDTLRDWLLLMSK 287
                 5678889******98765540155666666667899******************9754112133344321456689********99765144322222226653355666543378999******87665544433....344556666677899*******************986 PP

>> TIGR03680  eif2g_arch: translation initiation factor 2, gamma subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   5.3e-06    0.0013      73     159 ..     152     252 ..     128     287 .. 0.67

  Alignments for each domain:
  == domain 1    score: 15.9 bits;  conditional E-value: 5.3e-06
   TIGR03680  73 cgsetellrkvsfvDaPG....hetLmatml.sGaalmdgalLviaaneevPqpqtkehlvaleiigik.........nivivqnkidlvskekalenyee 159
                   +e++ + +v f+DaPG    h   +   +       + al+v++an++    q ++ l  le + ++         + v+v nk+dlv+ +  l n  e
  MMETSP1137-20121227|5661_1 152 YLTEEKYKTQVQFIDAPGalgpHIPAIRRAIwDAVRRANLALIVVDANDKHSARQCEQFLLQLEAVLVDqeketgrrtQTVLVLNKVDLVKPKAKLLNMSE 252
                 4567889999*******954444434433330334456789***********************9977422222223358**********98876665543 PP

>> TIGR00437  feoB: ferrous iron transport protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0   8.2e-06     0.002       1     149 [.     117     281 ..     117     346 .. 0.73

  Alignments for each domain:
  == domain 1    score: 14.7 bits;  conditional E-value: 8.2e-06
   TIGR00437   1 GnpNvGKstlfnaLtgsnqk.vgNwpGvTVekkegklelk..gedieivDlPGiYsLttvsldEkvardyllnekadLvvnvvdasn..leRnL.yltlQl........lelg..iplilalNlvdeAekkgiride.ekLee..rLGvpvvplsatkgrgieelkka 149
                 G  N GKstl+n L  s ++ v+    +T e + ++l+ +    +++++D PG    +  ++       + +  +a+L + vvda+     R+   + lQl         e+g   +++l+lN+vd+ + k   ++  e+  +  r   p++ +sa+ g g++ l++ 
  MMETSP1137-20121227|5661_1 117 GPTNAGKSTLLNGLLRSSVSiVSEKIHTTRENMLAYLTEEkyKTQVQFIDAPGALGPHIPAI---RRAIWDAVRRANLALIVVDANDkhSARQCeQFLLQLeavlvdqeKETGrrTQTVLVLNKVDLVKPKAKLLNMsEAFHKafRFDWPCLMVSARDGSGVDTLRDW 281
                 668**********988877527889999********986522579********755444444...2223445678999999999965114566424666663332221123443346899******999998888852567763356789999999999999998875 PP

>> TIGR02528  EutP: ethanolamine utilization protein, EutP
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.4   0.0     0.001      0.25       3     140 ..     113     282 ..     111     284 .. 0.57

  Alignments for each domain:
  == domain 1    score: 9.4 bits;  conditional E-value: 0.001
   TIGR02528   3 imliGsvgcGkttLtqaLk.......geeikykktqavey......kd..kaiDtPGeylen.rryYsaLlvtaadadvivlvqsatdees.........llspgfas....ifak.eviglvtkidlaeadkeierakelLeeaga..ekiFeissvdekgleelvdyL 140
                   liG++++Gk tL + L         e+i+  +   + y      k   + iD PG    + +   +a+  +   a++  +v +a+d++s         +l + + +     + + +++ ++ k+dl + ++++    e  ++a+    +  ++s+ d +g++ l+d+L
  MMETSP1137-20121227|5661_1 113 CCLIGPTNAGKSTLLNGLLrssvsivSEKIHTTRENMLAYlteekyKTqvQFIDAPGALGPHiPAIRRAIWDAVRRANLALIVVDANDKHSarqceqfllQLEAVLVDqekeTGRRtQTVLVLNKVDLVKPKAKLLNMSEAFHKAFRfdWPCLMVSARDGSGVDTLRDWL 282
                 67889999999999887651111111344444444444442111112223567888877666356666777777777777777777777652222211111223332211112334456778889999988888888888888886521568888999999999988887 PP

>> TIGR03263  guanyl_kin: guanylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0    0.0003     0.073       6      39 ..     115     148 ..     111     164 .. 0.90

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 0.0003
   TIGR03263   6 isgpsGvGKstlvkklleekeelklsvSattRkp 39 
                 + gp+ +GKstl++ ll+++ ++     +ttR++
  MMETSP1137-20121227|5661_1 115 LIGPTNAGKSTLLNGLLRSSVSIVSEKIHTTREN 148
                 78****************9999999999***986 PP

>> TIGR00929  VirB4_CagE: type IV secretion/conjugal transfer ATPase, VirB4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   0.1   0.00026     0.063     441     460 ..     114     133 ..     106     167 .. 0.92

  Alignments for each domain:
  == domain 1    score: 9.3 bits;  conditional E-value: 0.00026
   TIGR00929 441 lIfGptgsGKTvllnfllaq 460
                 +++Gpt++GK++lln ll +
  MMETSP1137-20121227|5661_1 114 CLIGPTNAGKSTLLNGLLRS 133
                 79*************99866 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (407 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       197  (0.0480254); expected 82.0 (0.02)
Passed bias filter:                      180  (0.043881); expected 82.0 (0.02)
Passed Vit filter:                        55  (0.0134081); expected 4.1 (0.001)
Passed Fwd filter:                        17  (0.00414432); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              17  [number of targets reported over threshold]
# CPU time: 0.56u 0.16s 00:00:00.72 Elapsed: 00:00:00.72
# Mc/sec: 746.11
//
Query:       MMETSP1137-20121227|5662_1  [L=126]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (126 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       154  (0.0375427); expected 82.0 (0.02)
Passed bias filter:                      140  (0.0341297); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.18s 00:00:00.34 Elapsed: 00:00:00.25
# Mc/sec: 665.23
//
Query:       MMETSP1137-20121227|5663_1  [L=354]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     3e-126  418.8   0.0   3.5e-126  418.6   0.0    1.0  1  TIGR01772 MDH_euk_gproteo: malate dehydrogenase, NAD-dependent
    8.5e-31  105.1   0.2    1.2e-30  104.6   0.1    1.1  1  TIGR01763 MalateDH_bact: malate dehydrogenase, NAD-dependent
    2.9e-21   73.9   0.1      8e-21   72.5   0.0    1.6  1  TIGR01771 L-LDH-NAD: L-lactate dehydrogenase
    7.3e-18   62.4   1.7    2.8e-16   57.2   0.3    2.5  2  TIGR01759 MalateDH-SF1: malate dehydrogenase
    4.2e-12   44.0   2.0    4.2e-12   44.0   1.4    2.1  2  TIGR01758 MDH_euk_cyt: malate dehydrogenase, NAD-dependent
    6.5e-12   43.0   0.1    2.3e-11   41.2   0.0    1.7  2  TIGR01756 LDH_protist: lactate dehydrogenase
    1.6e-07   28.1   0.3    6.2e-07   26.2   0.1    1.8  2  TIGR01757 Malate-DH_plant: malate dehydrogenase, NADP-dependent


Domain annotation for each model (and alignments):
>> TIGR01772  MDH_euk_gproteo: malate dehydrogenase, NAD-dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  418.6   0.0  5.9e-129  3.5e-126       1     312 [.      35     352 ..      35     353 .. 0.98

  Alignments for each domain:
  == domain 1    score: 418.6 bits;  conditional E-value: 5.9e-129
   TIGR01772   1 kvavlGaaGGiGqsLsLLLkaqpkvseLaLyDikeaaGvaaDLshidtkasvkgfseeeg.........lenalknadvvvipaGvprkPGltrdDLfkvnagivkelvaavaevapkavilvisnPvnslvpivaevlkkkgvydrnkllGvttLDivraetfvaeikikdsakvevpviGGhsgetiiPllsqlnllvkleedqleklikrvqvaGdevvkakaGaGsatLsmaeagakfalslvealkgeeesvvelayvekdaeeeaeffaiPlvlgkk.gvedrkvieklsseeekllekaveelkkniekGeefva 312
                 kvavlGaaGGiGq+LsLL k +p+v eLa yD+ ++ GvaaDLsh +tka+v+g  ++ g         le +l +advvvipaGvprkPG+trdDLf++na+iv++lv+ +++ +p+av+++isnPvns+vpi+aevlkk+gvy++nk++GvttLD+ ra+tfvae +  +  +v+vpviGGh+g ti+Pllsq++   k++++++e+l++r+q++GdevvkakaG GsatLsma+ag+ f++++++a+kg  e+v+ +ayve+   +ea +f++P +++ + gv++  + ++ls+ e+   +k+++ lkk+i+kG efv+
  MMETSP1137-20121227|5663_1  35 KVAVLGAAGGIGQPLSLLCKLSPYVDELACYDVVGTPGVAADLSHCPTKAKVTGNLPAVGswppsgntgLEACLTGADVVVIPAGVPRKPGMTRDDLFNTNASIVQTLVEGCGKYCPNAVLAIISNPVNSTVPIAAEVLKKMGVYNKNKVVGVTTLDVCRANTFVAENQGMSLESVNVPVIGGHAGITILPLLSQVPG-AKFSDADREALTHRIQFGGDEVVKAKAGSGSATLSMAYAGYIFTENVIKAMKG--EEVTMCAYVESS-ITEAAYFSSPCTFSAEgGVKEVLPFGELSTYEKGWFDKMIPDLKKQIAKGVEFVN 352
                 8****************************************************9998877788888899*********************************************************************************************************************************.99***************************************************..99********99.99**********98652799*********************************96 PP

>> TIGR01763  MalateDH_bact: malate dehydrogenase, NAD-dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  104.6   0.1   2.1e-33   1.2e-30      68     289 ..     109     331 ..     100     345 .. 0.82

  Alignments for each domain:
  == domain 1    score: 104.6 bits;  conditional E-value: 2.1e-33
   TIGR01763  68 ansdivvitaglarkpgmsredlvsvnadivrevtseivkysknaiivvvsnpldamtyvaa...kksg.lpkervigqagvldaarfrtfiamelgvsvkdvtalvlggh.gdemvplvrystvagipveeliakeriaeivertrkgggeivn.llkqgsayyapaasvvemveailkdkk.rvlpvaaylegqyglegiylgvpvilgk.ngvekilel.eldeeela 289
                 +++d+vvi ag++rkpgm+r+dl ++na+iv+++++   ky +na++ ++snp++    +aa   kk g + k++v+g +  ld  r  tf+a++ g+s++ v+  v+ggh g  ++pl     ++ +p +++  ++r +++  r + gg e+v  + ++gsa  + a +   + e ++k  k   +++ ay+e     e  y+  p  + + +gv+++l + el+ +e+ 
  MMETSP1137-20121227|5663_1 109 TGADVVVIPAGVPRKPGMTRDDLFNTNASIVQTLVEGCGKYCPNAVLAIISNPVNSTVPIAAevlKKMGvYNKNKVVGVT-TLDVCRANTFVAENQGMSLESVNVPVIGGHaGITILPL-----LSQVPGAKFSDADR-EALTHRIQFGGDEVVKaKAGSGSATLSMAYAGYIFTENVIKAMKgEEVTMCAYVESSI-TEAAYFSSPCTFSAeGGVKEVLPFgELSTYEKG 331
                 589***************************************************9876655411145553789*****86.69****************************44455565.....46677788888999.6799***********725789**********99********98735688899999876.688999999887652678888765456666655 PP

>> TIGR01771  L-LDH-NAD: L-lactate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.5   0.0   1.4e-23     8e-21      62     298 ..     108     341 ..     100     342 .. 0.81

  Alignments for each domain:
  == domain 1    score: 72.5 bits;  conditional E-value: 1.4e-23
   TIGR01771  62 lkdadlvvitaGaeqkpgetRlelveknvkilksivkevvksgfdgillvvsNPvD....iltyvvlklsglpkerviGsGtvLdtaRlrrllaeklevdpksvhayvlGEHGdsevavwssakiagvplkelleekekekekelkeiekevrdaayeiiekK...gaTsygiglavariveailkdek.rvlpvsallegeygikdvylgvPavlgkn.Gveeilel.kLseeEkeklkksaetlk 298
                 l +ad+vvi aG + kpg tR +l ++n++i++++v+   k+ ++++l ++sNPv     i + v++k+  ++k++v+G  t+Ld  R  +++ae+ +++ +sv+  v+G H            i  +pl + +  + k ++++ ++++++++  + e+++ K   g+ + ++++a   ++e+++k  k + +++ a++e++  ++  y++ P++ +++ Gv+e+l + +Ls  Ek  ++k +  lk
  MMETSP1137-20121227|5663_1 108 LTGADVVVIPAGVPRKPGMTRDDLFNTNASIVQTLVEGCGKYCPNAVLAIISNPVNstvpIAAEVLKKMGVYNKNKVVGV-TTLDVCRANTFVAENQGMSLESVNVPVIGGHA----------GITILPLLSQVPGA-KFSDADREALTHRIQFGGDEVVKAKagsGSATLSMAYAGYIFTENVIKAMKgEEVTMCAYVESS-ITEAAYFSSPCTFSAEgGVKEVLPFgELSTYEKGWFDKMIPDLK 341
                 579***************************************************86666699*****************8.88***************************994..........44444544444422.2255566678888888888888888544567777888888899****99873345566667554.44558*******98763699999865899999998888777766 PP

>> TIGR01759  MalateDH-SF1: malate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.0     0.011       6.3       2      20 ..      32      50 ..      31      56 .. 0.86
   2 !   57.2   0.3   4.8e-19   2.8e-16      74     300 ..     105     319 ..      99     345 .. 0.81

  Alignments for each domain:
  == domain 1    score: 3.5 bits;  conditional E-value: 0.011
   TIGR01759  2 epvrvlvtGaaGqiaysll 20
                +p++v+v GaaG i+  l+
  MMETSP1137-20121227|5663_1 32 KPIKVAVLGAAGGIGQPLS 50
                79************98775 PP

  == domain 2    score: 57.2 bits;  conditional E-value: 4.8e-19
   TIGR01759  74 eeafkdvdvallvgavPrkeGmeRadllskngkifkeqgkalnkvAkkdvkvlvvgnPantnaliaskaapki...kkknfsaltrLDhnRalsqlaeklgvkvskvknvviwGnHsntqvpdvtqatvkkeekgkpvkelikdeewleeefvktvqkRgaavieargassaasaakaaidhv.rdwvlgtaegefvsmavlsdgnpYgipegivfsfPvtvkkdgeyeiv 300
                 e+ ++++dv ++ ++vPrk+Gm R dl+++n++i ++  +   k+   ++ + +++nP+n    ia++  +k+   +k+++  +t LD  Ra + +ae  g+++++v+  vi G  + t +p ++q  v     g +  ++   +   +e++++++q  g +v++a+  s +a  + a +  +  + v+   +ge v+m  +++     i e  +fs P+t + +g ++ v
  MMETSP1137-20121227|5663_1 105 EACLTGADVVVIPAGVPRKPGMTRDDLFNTNASIVQTLVEGCGKYCP-NAVLAIISNPVNSTVPIAAEVLKKMgvyNKNKVVGVTTLDVCRANTFVAENQGMSLESVNVPVIGGHAGITILPLLSQ--VP----GAKFSDA---D---REALTHRIQFGGDEVVKAKAGSGSATLSMAYAGYIfTENVIKAMKGEEVTMCAYVES---SITEAAYFSSPCTFSAEGGVKEV 319
                 5678999**************************************97.5557899***********99999763335667889***********************97666666556788887765..44....4455543...2...578999************988877766666555542556666779**********99...9*************999987644 PP

>> TIGR01758  MDH_euk_cyt: malate dehydrogenase, NAD-dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.1       1.6   9.4e+02       1      16 [.      35      50 ..      35      53 .. 0.83
   2 !   44.0   1.4   7.2e-15   4.2e-12      71     235 ..     106     260 ..     100     320 .. 0.68

  Alignments for each domain:
  == domain 1    score: -3.2 bits;  conditional E-value: 1.6
   TIGR01758  1 rvlvtGaaGqiayall 16
                +v v GaaG i+  l+
  MMETSP1137-20121227|5663_1 35 KVAVLGAAGGIGQPLS 50
                68999******98876 PP

  == domain 2    score: 44.0 bits;  conditional E-value: 7.2e-15
   TIGR01758  71 vafedvdvallvGalPrkeGmerkdllsknvkifkeqgealdkyakkdvkvlvvgnPantnalvlseyaps...ipkknvsaltrldhnralaqvaeklgvpvsdvknviiwGnhsstqyPdvnsatvkkdgkekpvrelikddeylkgefietvqkrGaavikarkl 235
                  ++++ dv ++  ++Prk+Gm r dl+++n++i ++  e  +ky  + v + +++nP+n+ + +  e+ +     +k+ v  +t ld  ra + vae  g+  ++v   +i G    t +P +++    k     + r          + + + +q  G +v+ka+  
  MMETSP1137-20121227|5663_1 106 ACLTGADVVVIPAGVPRKPGMTRDDLFNTNASIVQTLVEGCGKYCPNAV-LAIISNPVNSTVPIAAEVLKKmgvYNKNKVVGVTTLDVCRANTFVAENQGMSLESVNVPVIGGHAGITILPLLSQVPGAKF--SDADR----------EALTHRIQFGGDEVVKAKAG 260
                 456899**************************************96655.7789*****99888877755423245556899***********************96666655555567777766433322..11222..........23334455555566555554 PP

>> TIGR01756  LDH_protist: lactate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.2   0.0   3.9e-14   2.3e-11      52     178 ..     102     230 ..      99     251 .. 0.82
   2 ?   -1.1   0.0       0.3   1.7e+02     260     279 ..     298     317 ..     272     325 .. 0.83

  Alignments for each domain:
  == domain 1    score: 41.2 bits;  conditional E-value: 3.9e-14
   TIGR01756  52 teleeafkdidiaflvasvplkpGevradllkknasifkaiGealseyakptvkvlviGnpvntnalva..mlhakklseen.fssllmldqnravseiasklkvevdeirdvvvwGnha.esmvadltha 178
                 t le  + + d+  + a vp kpG  r dl++ nasi +++ e  ++y  ++v + +i npvn+ + +a  +l+  ++ ++n    +++ld  ra   +a + ++ ++ ++ v v G ha  + ++ l+++
  MMETSP1137-20121227|5663_1 102 TGLEACLTGADVVVIPAGVPRKPGMTRDDLFNTNASIVQTLVEGCGKYCPNAVLA-IISNPVNSTVPIAaeVLKKMGVYNKNkVVGVTTLDVCRANTFVAENQGMSLESVN-VPVIGGHAgITILPLLSQV 230
                 567888999****************************************999976.69********9994446666666666356899********************996.5555556515667777776 PP

  == domain 2    score: -1.1 bits;  conditional E-value: 0.3
   TIGR01756 260 ikpGvvfsfpctvdkdGkvh 279
                 i     fs pct   +G v+
  MMETSP1137-20121227|5663_1 298 ITEAAYFSSPCTFSAEGGVK 317
                 5566789*****99999875 PP

>> TIGR01757  Malate-DH_plant: malate dehydrogenase, NADP-dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0      0.17     1e+02      43      60 ..      32      49 ..      22      57 .. 0.79
   2 !   26.2   0.1   1.1e-09   6.2e-07     121     332 ..     111     314 ..     102     337 .. 0.76

  Alignments for each domain:
  == domain 1    score: -0.8 bits;  conditional E-value: 0.17
   TIGR01757 43 ktvnvavsgaagqisnhl 60
                k ++vav gaag i + l
  MMETSP1137-20121227|5663_1 32 KPIKVAVLGAAGGIGQPL 49
                679*********998754 PP

  == domain 2    score: 26.2 bits;  conditional E-value: 1.1e-09
   TIGR01757 121 adwalligakprgpgmeradlldingeifadqgkalnevasknvkvlvvgnpcntnalialknapn..iprkn.fhaltrldenrakcqlalksgkfytsvsnvtiwgnhsttqvpdfvnakiggkpakevikdtkylkeeftikvqkrggalikkwgrssaastavsiadai.kslvvptaegdwfstgvitdgnpygireglvfslpcrskgdg 332
                 ad  ++    pr pgm r dl++ n  i +   +   + + ++  + ++ np n+   ia +   +  + +kn    +t ld  ra+  +a + g   +sv  v + g h+   +  ++ +++ g   ++        +e +t ++q  g  ++k    s +a+ +++ a  i    v+ + +g+  + + + +     i+e   fs pc    +g
  MMETSP1137-20121227|5663_1 111 ADVVVIPAGVPRKPGMTRDDLFNTNASIVQTLVEGCGKYCPNA-VLAIISNPVNSTVPIAAEVLKKmgVYNKNkVVGVTTLDVCRANTFVAENQGMSLESVN-VPVIGGHAGITILPLL-SQVPGAKFSDA------DREALTHRIQFGGDEVVKAKAGSGSATLSMAYAGYIfTENVIKAMKGEEVTMCAYVES---SITEAAYFSSPCTFSAEG 314
                 6666677778******************998888887776654.466899******9999765554114455526789*********************995.6666666655544444.56666655443......3789999999999999997777777777777777662557888889998887777765...699999999999876665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (354 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       116  (0.0282789); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.36u 0.16s 00:00:00.52 Elapsed: 00:00:00.45
# Mc/sec: 1038.31
//
Query:       MMETSP1137-20121227|5664_1  [L=351]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.011   13.8   0.1      0.021   13.0   0.1    1.4  1  TIGR03057 xxxLxxG_by_4: X-X-X-Leu-X-X-Gly heptad repeats


Domain annotation for each model (and alignments):
>> TIGR03057  xxxLxxG_by_4: X-X-X-Leu-X-X-Gly heptad repeats
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.1     5e-06     0.021       6      25 ..     182     201 ..     182     204 .. 0.88

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 5e-06
   TIGR03057   6 dGagqLasGagqLasGanqL 25 
                 dG++q+a+G++q  +G+  L
  MMETSP1137-20121227|5664_1 182 DGSSQAADGTNQVPDGSRRL 201
                 79***********9999776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (351 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        47  (0.0114578); expected 82.0 (0.02)
Passed bias filter:                       41  (0.00999512); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.24u 0.14s 00:00:00.38 Elapsed: 00:00:00.38
# Mc/sec: 1219.16
//
Query:       MMETSP1137-20121227|5665_1  [L=1014]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   2.9e-145  483.1   0.5   6.3e-145  482.0   0.4    1.4  1  TIGR00958 3a01208: antigen peptide transporter 2
   7.6e-131  435.4   8.2   1.5e-130  434.4   5.7    1.5  1  TIGR02204 MsbA_rel: ABC transporter, permease/ATP-binding protein
   9.8e-112  372.1   4.7   1.5e-111  371.5   3.3    1.2  1  TIGR02203 MsbA_lipidA: lipid A export permease/ATP-binding protein MsbA
    5.4e-97  323.5   5.0    7.8e-97  323.0   3.5    1.1  1  TIGR01846 type_I_sec_HlyB: type I secretion system ATPase
    4.8e-88  294.2   8.4    1.1e-87  292.9   5.9    1.6  1  TIGR03797 NHLM_micro_ABC2: NHLM bacteriocin system ABC transporter, ATP-binding protein
    1.3e-83  279.3   4.8    1.8e-83  278.8   3.3    1.2  1  TIGR03796 NHLM_micro_ABC1: NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein
    3.4e-78  261.4   1.8      5e-78  260.9   1.2    1.1  1  TIGR03375 type_I_sec_LssB: type I secretion system ATPase
    2.2e-74  249.1   0.1    5.6e-74  247.7   0.0    1.6  2  TIGR01193 bacteriocin_ABC: ABC-type bacteriocin transporter
    9.1e-68  227.0   5.6    1.4e-67  226.4   3.9    1.2  1  TIGR02868 CydC: thiol reductant ABC exporter, CydC subunit
    3.1e-66  222.0   2.1      5e-66  221.3   1.4    1.2  1  TIGR01192 chvA: glucan exporter ATP-binding protein
      4e-66  221.9  13.6    5.5e-65  218.1   1.3    2.8  3  TIGR02857 CydD: thiol reductant ABC exporter, CydD subunit
    3.7e-59  198.5   6.5    8.5e-59  197.3   4.5    1.5  1  TIGR01842 type_I_sec_PrtD: type I secretion system ATPase
    1.1e-41  140.2   3.2    1.8e-41  139.5   2.2    1.2  1  TIGR00957 MRP_assoc_pro: multi drug resistance-associated protein (MRP)
    8.2e-38  128.0   2.8    1.3e-37  127.3   1.9    1.3  1  TIGR03864 PQQ_ABC_ATP: ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system
    9.3e-34  114.7   0.0    1.5e-33  114.0   0.0    1.3  1  TIGR00972 3a0107s01c2: phosphate ABC transporter, ATP-binding protein
    1.4e-33  114.2   1.8    2.6e-33  113.3   1.2    1.3  1  TIGR03258 PhnT: 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT
    2.2e-32  110.4   0.9    4.2e-32  109.5   0.6    1.4  1  TIGR02769 nickel_nikE: nickel import ATP-binding protein NikE
    8.4e-32  108.4   0.1    1.3e-31  107.7   0.1    1.3  1  TIGR02673 FtsE: cell division ATP-binding protein FtsE
    1.7e-31  106.4   3.8    3.8e-27   92.0   0.0    2.1  2  TIGR01271 CFTR_protein: cystic fibrosis transmembrane conductor regulator (CFTR)
    1.4e-30  104.4   0.5    2.5e-30  103.5   0.4    1.4  1  TIGR00968 3a0106s01: sulfate ABC transporter, ATP-binding protein
    3.1e-30  103.4   0.3      5e-30  102.7   0.2    1.2  1  TIGR03265 PhnT2: putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein
    3.1e-30  103.3   0.0      5e-30  102.6   0.0    1.2  1  TIGR01186 proV: glycine betaine/L-proline transport ATP binding subunit
    3.7e-30  102.9   0.3    5.6e-30  102.3   0.2    1.2  1  TIGR01187 potA: polyamine ABC transporter, ATP-binding protein
    5.7e-30  102.6   0.9    8.5e-30  102.0   0.6    1.2  1  TIGR02142 modC_ABC: molybdate ABC transporter, ATP-binding protein
    6.5e-30  102.1   0.1    9.8e-30  101.5   0.1    1.2  1  TIGR03410 urea_trans_UrtE: urea ABC transporter, ATP-binding protein UrtE
    3.2e-29  100.0   0.0    5.7e-29   99.2   0.0    1.3  1  TIGR01188 drrA: daunorubicin resistance ABC transporter, ATP-binding protein
    4.6e-29   99.4   0.1    7.8e-29   98.6   0.1    1.3  1  TIGR02315 ABC_phnC: phosphonate ABC transporter, ATP-binding protein
    8.1e-29   98.6   0.3    1.4e-28   97.8   0.2    1.4  1  TIGR02982 heterocyst_DevA: ABC exporter ATP-binding subunit, DevA family
    1.2e-28   98.1   0.1      2e-28   97.3   0.0    1.4  1  TIGR01277 thiQ: thiamine ABC transporter, ATP-binding protein
    2.4e-28   96.7   0.5    7.4e-28   95.1   0.1    1.9  1  TIGR01166 cbiO: cobalt ABC transporter, ATP-binding protein
      3e-28   96.7   0.1    6.5e-28   95.5   0.1    1.5  1  TIGR02314 ABC_MetN: D-methionine ABC transporter, ATP-binding protein
    7.4e-28   95.3   4.0    1.4e-27   94.4   2.8    1.4  1  TIGR03873 F420-0_ABC_ATP: proposed F420-0 ABC transporter, ATP-binding protein
    1.5e-27   94.3   0.0    2.4e-27   93.6   0.0    1.3  1  TIGR03608 L_ocin_972_ABC: putative bacteriocin export ABC transporter, lactococcin 972 group
      9e-27   91.8   0.0    1.5e-26   91.1   0.0    1.3  1  TIGR02211 LolD_lipo_ex: lipoprotein releasing system, ATP-binding protein
    9.4e-27   91.6   0.7    2.7e-26   90.1   0.1    2.0  1  TIGR03005 ectoine_ehuA: ectoine/hydroxyectoine ABC transporter, ATP-binding protein EhuA
    3.2e-26   90.2   0.1    5.6e-26   89.5   0.1    1.3  1  TIGR00960 3a0501s02: type II secretory pathway family protein
    4.6e-25   86.1   0.1    8.3e-25   85.2   0.0    1.3  1  TIGR00955 3a01204: pigment precursor permease
    7.2e-22   75.7   1.1    8.6e-22   75.5   0.1    1.6  1  TIGR02770 nickel_nikD: nickel import ATP-binding protein NikD
      2e-20   71.2   0.0    3.5e-20   70.4   0.0    1.4  1  TIGR01184 ntrCD: nitrate ABC transporter, ATP-binding proteins C and D
    9.8e-20   68.9   0.6    2.2e-19   67.7   0.4    1.6  1  TIGR01189 ccmA: heme ABC exporter, ATP-binding protein CcmA
    2.1e-19   67.3   0.0    7.9e-11   39.0   0.0    2.2  2  TIGR03719 ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family
    5.8e-19   66.5   0.1    9.9e-19   65.8   0.0    1.3  1  TIGR03411 urea_trans_UrtD: urea ABC transporter, ATP-binding protein UrtD
    6.5e-19   65.9   0.1    1.1e-18   65.1   0.1    1.3  1  TIGR01288 nodI: nodulation ABC transporter NodI
    1.1e-18   65.0   0.0    5.1e-18   62.7   0.0    1.9  1  TIGR03269 met_CoM_red_A2: methyl coenzyme M reductase system, component A2
    1.4e-18   65.2   0.0    2.7e-18   64.3   0.0    1.4  1  TIGR03740 galliderm_ABC: lantibiotic protection ABC transporter, ATP-binding subunit
    6.1e-18   63.2   0.8    1.4e-17   62.0   0.5    1.5  1  TIGR03771 anch_rpt_ABC: anchored repeat-type ABC transporter, ATP-binding subunit
    8.5e-18   62.3   0.1    1.7e-17   61.3   0.0    1.4  1  TIGR03415 ABC_choXWV_ATP: choline ABC transporter, ATP-binding protein
      1e-17   62.2   0.0    3.9e-17   60.3   0.0    1.8  1  TIGR01978 sufC: FeS assembly ATPase SufC
    3.7e-17   58.4   0.2    5.3e-17   57.8   0.1    1.1  1  TIGR01257 rim_protein: rim ABC transporter
    4.7e-17   60.2   0.0    7.2e-17   59.6   0.0    1.2  1  TIGR03522 GldA_ABC_ATP: gliding motility-associated ABC transporter ATP-binding subunit GldA
    5.4e-17   59.8   0.1    1.9e-16   58.0   0.1    1.9  1  TIGR02324 CP_lyasePhnL: phosphonate C-P lyase system protein PhnL
      6e-17   59.1   0.1    1.1e-16   58.2   0.0    1.3  1  TIGR02633 xylG: D-xylose ABC transporter, ATP-binding protein
      4e-16   55.7   0.0      6e-16   55.1   0.0    1.1  1  TIGR00956 3a01205: pleiotropic drug resistance family protein
    5.4e-16   56.1   1.8    3.5e-11   40.2   0.0    2.2  2  TIGR01194 cyc_pep_trnsptr: cyclic peptide transporter
    1.5e-13   48.6   0.9    3.6e-13   47.4   0.6    1.6  1  TIGR02323 CP_lyasePhnK: phosphonate C-P lyase system protein PhnK
      7e-10   35.8   0.2    4.2e-09   33.2   0.0    2.2  2  TIGR00954 3a01203: peroxysomal long chain fatty acyl transporter
    3.2e-07   26.7   0.0    2.3e-05   20.6   0.0    2.1  2  TIGR00630 uvra: excinuclease ABC subunit A


Domain annotation for each model (and alignments):
>> TIGR00958  3a01208: antigen peptide transporter 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  482.0   0.4  8.7e-147  6.3e-145     140     711 .]     341     938 ..     318     938 .. 0.91

  Alignments for each domain:
  == domain 1    score: 482.0 bits;  conditional E-value: 8.7e-147
   TIGR00958 140 eeqsetadlllrLLkllkrdlkllllalvllvlsvlgevliPkytgrvidtllqdks..............vealakaiflltllslaSsllaglrgGs....feyamarinlriredlfksllrQdigFfdenktGeltSRlssDtstvseslslnvnvllrnlvkllgllifmlslSprLtlvtllalPlvllaekvfgkvyqklseevqeavakanqvaeEalsglrTVrSFaaEekEasrfkekleeilqlnkkkalayalylwttellgllilvlvLayGgqlvle..gkvssgnLvsFlLYqlqlgeavreLsevysellkavGasekvFeyldRkPqlelsgtlapk.nleGkveFqdVsFsYPsrpdkpvlkdLtftlepGevvalVGPsGsGKStvaallenlYqPtgGqvllDgkplkeydhkylhrkvalVgqEPvlfsgsvreNiaYGltktedeevtaaakaanahdFiselekgydtevgekGsqlsgGqkqriAiARALvrkPrvLiLDeAtSALDaeveqllqe....sksaksrtvlliahrLstvekadkilvlkkgsvvelGthkqLmeked.vykqlv 711
                 ++   +a+ l r +kl+ ++l l++lal+ ++++++  +++P++ g+++d +++ ++              +++  ++ + + ll +a s++ g+ gG+    f+    ri+  +r+ lf+s++ Qdi+Ffd  +tG+lt R++sD   +   ++++++ l+ n + l+g++++ +  S++L++v + ++ +++ ++ ++ k+  k+++++ +  + a+   +Ea+s +rTVr  ++E +Ea++  e l + l+   + a+  a+  + ++ l+l+  vl+L+yGg   ++  g ++ g+L+ + LY   + +  + L ++ ++  +a+Ga+e+v +++d +P ++l +  + +   +  v+ ++V+F Y  rp++ +l  L++ +epG+v alVG sG+GKSt + ll ++Y+P++G++ll g++ + ++  ++h+++++V qE +lf+ ++ eNiaYG    +++e+  aa++a+ah+Fis +e+gy t vge+G+ lsgGqkqriA+ARAL+rkPr+L LDeAtSALDae+e+l+q+       + ++tv+l+ahrLstv +a+ i+v+  g++ ++Gth+qL +++  +y++lv
  MMETSP1137-20121227|5665_1 341 TGTLTSAQYLARGMKLAYPHLALFILALLCVTVTSILSLFLPNFQGQIMDHVIAGRTactpsateaeqndeCHDARQSFMDVVLLYIACSIALGFLGGVrslcFNLIGRRITVSVRNTLFRSVIIQDIAFFDGMRTGDLTQRMTSDVRAMVAPVTTTLSTLISNSMLLVGGVAMCFVTSWQLSMVAYTTVLPIMHVTEAYAKWSGKINRQIFQHYSDASAATNEAISNIRTVRAVSTEAHEADKVGECLAQALRKGVRDAFFGAFSAAFNNYLDLGAGVLILWYGGSIAMSkdGSITVGSLIKYQLYWNMINNSWQALNNLINSXTRAAGAAERVLSLVDLEPDIPLAAGKRADdLHSWSVTIEEVTFRYQMRPQQTILDRLSLHVEPGTVCALVGKSGGGKSTLVHLLLRYYDPQEGRILLGGVDYRTLNLSSVHQRIGVVSQETQLFNATIAENIAYGAPAHTEAELLRAAESAQAHQFISSFEDGYATRVGERGQRLSGGQKQRIAVARALLRKPRLLCLDEATSALDAESEALVQKaldaLIWTGDHTVVLVAHRLSTVVNAHAIAVVDGGRIAQTGTHAQLLADKHgIYASLV 938
                 45566777999***************************************99865443322211111222233444455555666666666666666644444***************************************************************************************99**********************************************************************************************999853378***************************************************97666555055679****************************************************************************************************************************************************************************99999999655456689************************************9988877***997 PP

>> TIGR02204  MsbA_rel: ABC transporter, permease/ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  434.4   5.7  2.1e-132  1.5e-130      55     575 ..     417     941 ..     346     942 .. 0.88

  Alignments for each domain:
  == domain 1    score: 434.4 bits;  conditional E-value: 2.1e-132
   TIGR02204  55 ellneafalllvvvlvlalatalrfylvsslGervvadlrkavfahllelspaffdknrsgevlsrltadttllksvvGaslsialrnlllliGalamlvitsvkltslvllavPlvllPillfgrrvrklsresqdrladasayagealeaiktvqayaseeaersrfdaavekayeaarkrikaralliavvivlvfgavvlvlWvGardvla..gklsaGeLaqfvlyavlvagslgalsevlgelqraaGaaerliellkaksdikaPaqpkalpakvrgeiefeevkfayParpdqkaldgldltvrpGetvalvGPsGaGkstllelllrfydPqsGailldGvdlreldpeelrerlalvpqdsalfaasvleniryGrpdasdeeveaaakaaeadefisklpeGydtllGergvtLsGGqkqriaiarailkdapiLLLdeatsaLdaeseqlvqqaleelm..kgrttlviahrLatvlkadrivvldkGriveqGthaeLia.kggLyarlarLq 575
                 +   ++++l ++  + l++   +r      +G r+   +r+++f  ++  + affd +r+g++  r+t+d+  + + v ++ls  + n +ll+G++am ++ts +l+ +   +v  ++    +++++  k+ r+   + +dasa ++ea+++i+tv+a ++e++e+++ ++ + +a++ +++     a+  a+  +l +ga vl+lW G++  ++  g+++ G+L ++ ly  ++  s  al ++++   raaGaaer+  l++ ++di   a ++a     +  +++eev+f+y  rp+q+ ld l+l+v+pG + alvG sG Gkstl++lllr+ydPq+G+ill+Gvd r l+ + + +r+ +v+q+++lf a + eni+yG p  +++e+ +aa++a+a++fis++++Gy+t +Gerg +LsGGqkqria+ara+l++ ++L LdeatsaLdaese lvq+al++l+   ++t +++ahrL+tv +a  i+v+d Gri ++Gtha+L+a k g+ya l++ q
  MMETSP1137-20121227|5665_1 417 QSFMDVVLLYIACSIALGFLGGVRSLCFNLIGRRITVSVRNTLFRSVIIQDIAFFDGMRTGDLTQRMTSDVRAMVAPVTTTLSTLISNSMLLVGGVAMCFVTSWQLSMVAYTTVLPIMHVTEAYAKWSGKINRQIFQHYSDASAATNEAISNIRTVRAVSTEAHEADKVGECLAQALRKGVRDAFFGAFSAAFNNYLDLGAGVLILWYGGSIAMSkdGSITVGSLIKYQLYWNMINNSWQALNNLINSXTRAAGAAERVLSLVDLEPDIPLAAGKRAD-DLHSWSVTIEEVTFRYQMRPQQTILDRLSLHVEPGTVCALVGKSGGGKSTLVHLLLRYYDPQEGRILLGGVDYRTLNLSSVHQRIGVVSQETQLFNATIAENIAYGAPAHTEAELLRAAESAQAHQFISSFEDGYATRVGERGQRLSGGQKQRIAVARALLRKPRLLCLDEATSALDAESEALVQKALDALIwtGDHTVVLVAHRLSTVVNAHAIAVVDGGRIAQTGTHAQLLAdKHGIYASLVAKQ 941
                 22222333333444444455679999**********************************************************************************999888778888899***************************************************************************************999864479**************************************************877665543.445668****************************************************************************************************************************************************************************************97335789999******************************9973679*****9877 PP

>> TIGR02203  MsbA_lipidA: lipid A export permease/ATP-binding protein MsbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  371.5   3.3  2.1e-113  1.5e-111       6     570 ..     354     942 ..     349     944 .. 0.94

  Alignments for each domain:
  == domain 1    score: 371.5 bits;  conditional E-value: 2.1e-113
   TIGR02203   6 lsyvrpykallvlalvalvlvaatesllaallkplldegfse.................lekeevllavPllvvglvvlrGiasfvsdyllakvsnkvvrdlRkklfeklltlpsayfdkessgsllsrltfdseqvvsaatdvlkvlvretltvigllivllylsWqltliv.vvllPvlallvrvvskrlrkiskeiqnsigeltkvveealqgyrvvklfggqeaeakRfdavsnrlrrlalkvasasslssplvqliasvalavvlli..alvqaqagaltvGelvafitamlalikplksLtnvsaklqkglaaaesvfallDsppe..kdeGtralervrGkvefrnvtfrypgd.drealdsislkveaGevvalvGrsGsGkstlvnllpRFyepdsGeillDgvdladlkLasLRrqvalvsqdvvLFddtiaenvaYgeleevdeaeveealaaaylkdlvdklpeGldtevGengskLsGGqRqRlaiaRallkdaPiLiLDeatsaLDneseRlvqaaLerlm..kgRttlviahRLstiekaDrivvlddGkiverGtheeLla.rnGlYasLhkiqf 570
                 +  + p+ al++lal+ +++++    +l+++  +++d+  ++                 +  ++  + v ll +   +  G    v ++++  + +++  ++R++lf  ++    a+fd   +g l +r+t+d+   v  +t  l +l+ +++ ++g +++ + +sWql+++    +lP++  ++++++k   ki+++i +  +++  + +ea+++ r v+   ++++ea + ++   + +r++++ a  ++ s ++ + +   a  ++l     +  +++g++tvG+l+ +     ++ ++ + L n+ ++  +   aae+v++l+D +p+    +G+ra +    +v +++vtfry+ + ++ +ld +sl+ve+G+v alvG+sG Gkstlv+ll R+y+p++G+ill gvd + l+L+s+ +++ +vsq+  LF+ tiaen+aYg+    +eae+ +a++ a++++++ + ++G  t+vGe+g +LsGGq+qR+a+aRall+   +L LDeatsaLD+ese lvq+aL++l+   + t +++ahRLst+ +a  i v+d G+i  +Gth +Lla ++G+YasL + q+
  MMETSP1137-20121227|5665_1 354 MKLAYPHLALFILALLCVTVTSILSLFLPNFQGQIMDHVIAGrtactpsateaeqndecHDARQSFMDVVLLYIACSIALGFLGGVRSLCFNLIGRRITVSVRNTLFRSVIIQDIAFFDGMRTGDLTQRMTSDVRAMVAPVTTTLSTLISNSMLLVGGVAMCFVTSWQLSMVAyTTVLPIMH-VTEAYAKWSGKINRQIFQHYSDASAATNEAISNIRTVRAVSTEAHEADKVGECLAQALRKGVRDAFFGAFSAAFNNYLDLGAGVLILWYggSIAMSKDGSITVGSLIKYQLYWNMINNSWQALNNLINSXTRAAGAAERVLSLVDLEPDipLAAGKRADDLHSWSVTIEEVTFRYQMRpQQTILDRLSLHVEPGTVCALVGKSGGGKSTLVHLLLRYYDPQEGRILLGGVDYRTLNLSSVHQRIGVVSQETQLFNATIAENIAYGAP-AHTEAELLRAAESAQAHQFISSFEDGYATRVGERGQRLSGGQKQRIAVARALLRKPRLLCLDEATSALDAESEALVQKALDALIwtGDHTVVLVAHRLSTVVNAHAIAVVDGGRIAQTGTHAQLLAdKHGIYASLVAKQM 942
                 5566788999*****************************9999*************999888999999999999999999**9***************************************************************************************997256889875.678899999****************************************************************99999876666666652245678899**********************************************999833579*********************998245679***********************************************************************************.678999****************************************************************************97335789999*******************************96378*****987665 PP

>> TIGR01846  type_I_sec_HlyB: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  323.0   3.5   1.1e-98   7.8e-97     184     693 ..     425     942 ..     412     943 .. 0.89

  Alignments for each domain:
  == domain 1    score: 323.0 bits;  conditional E-value: 1.1e-98
   TIGR01846 184 allavavaevalsllrtylfahltsridvelgaklyrhllalPlsyfesrrvGdtvarvr.eleqirefltgsaltvvldllfvvvflavmffyspkltlvvlvslviylll...svivspilrkrvedkfeksaeaqsflvesvtgietikasavepqfkrrWerqlaayvaasfkvtklgnlasqaieliqkltaalllwfGaklvl..kGelsvGqlvafnmlagrvsqPvlrlaqlWqdfqqvkialerlGdild.sPteassagkaalpelkGaiefenirfryke.dspevlsnlsldikaGeviGivGpsGsGkstltkllqrlyvPekGrvlvdgvdlaladPawlrrqvgvvlqenvlfsrsirdnialakPaiseekviaaaklaGahdfiselkqGyetevgekGaalsGGqrqrialaralvanPrilildeatsaldyeseavimrnlrei..ckgrtviiiahrlstvraadrilvlekGkivesGkheellak.eglyaklyqqqs 693
                   +a ++a  +l+++r+  f     ri v +   l+r ++   +++f+  r+Gd   r+  ++  +   +t +  t++ + ++ v  +a+ f  s +l +v  ++++  + +   +   s+++ +++ ++++  +   +   e+++ i+t++a ++e +  ++  + la+ ++++ +    g +++   + ++  + +l+lw+G ++ +  +G+++vG l+ + ++ + + +    l  l     ++  a er+  ++d +P  +  agk a    + ++++e+++fry+   + ++l+ lsl++++G+v  +vG+sG Gkstl +ll r+y P++Gr+l+ gvd   ++ +++ +++gvv qe  lf+ +i++nia + Pa  e++++ aa+ a ah+fis+ ++Gy t+vge+G  lsGGq+qria+aral+ +Pr+l ldeatsald+esea++++ l+++  + + tv+ +ahrlstv +a+ i v++ G+i++ G+h++lla+ +g ya+l  +q 
  MMETSP1137-20121227|5665_1 425 LYIACSIALGFLGGVRSLCFNLIGRRITVSVRNTLFRSVIIQDIAFFDGMRTGDLTQRMTsDVRAMVAPVTTTLSTLISNSMLLVGGVAMCFVTSWQLSMVAYTTVLPIMHVteaYAKWSGKINRQIFQHYSDAS---AATNEAISNIRTVRAVSTEAHEADKVGECLAQALRKGVRDAFFGAFSAAFNNYLDLGAGVLILWYGGSIAMskDGSITVGSLIKYQLYWNMINNSWQALNNLINSXTRAAGAAERVLSLVDlEPDIPLAAGKRADDLHSWSVTIEEVTFRYQMrPQQTILDRLSLHVEPGTVCALVGKSGGGKSTLVHLLLRYYDPQEGRILLGGVDYRTLNLSSVHQRIGVVSQETQLFNATIAENIAYGAPAHTEAELLRAAESAQAHQFISSFEDGYATRVGERGQRLSGGQKQRIAVARALLRKPRLLCLDEATSALDAESEALVQKALDALiwTGDHTVVLVAHRLSTVVNAHAIAVVDGGRIAQTGTHAQLLADkHGIYASLVAKQM 942
                 45678889999********************************************99986134444444555545555566667777888888898998887665443333301144557777777766666555...5557**************************************************************99887446*****************************************99999868999*************************9625789**********************************************************************************************************************************************************************97345679************************************9768******99995 PP

>> TIGR03797  NHLM_micro_ABC2: NHLM bacteriocin system ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  292.9   5.9   1.6e-89   1.1e-87     146     686 .]     372     942 ..     340     942 .. 0.87

  Alignments for each domain:
  == domain 1    score: 292.9 bits;  conditional E-value: 1.6e-89
   TIGR03797 146 llgtllglvvPlatgilldevi.......Pdae...........rslllqvalallaaalgallfqlaqslavlRletavdaslqaavwdrLLrlpasfFreysagdLasramg.vsqirrllsgatlkallssifallnlvlllvyslklalvavllalvaiavtlvlgllqvrkerkllelegklsgltvqlingisKlrvagaeerafaawakefseqrklelkaqriedlltvlnavlpvltsavlfalaisll..aaaklslgsflafntafgsflkavtslaetlievlavvplyerakPileaepEvde.ekvdpgkLs.GaievdrvtFrYekd.gplvLddvslkiepGefvaivGaSGsGKStllrlLLgFekPesGsvlyDGqdlekldvqavRrqlGvVLQngrllsgsileniaggas.ltldeaweaarmagleeDikamPmglhTvisegggtlSGGQrQRlliAralvrkPrillfDEATSALDNrtQaiVseslekl....kvtRiviAHRLSTirnadrilvleeGrvveqGsyeeLla.keGlfaelarRQl 686
                  ++++l+l++P  +g+++d+vi       P+a+           r++ ++v+l  +a++++   +  ++sl    +  ++ +s++ +++  ++    +fF    +gdL++r+++ v+++   +++++ + +  s++ +  +++ +v s++l++va + +l ++ vt + + +  + +r++++  ++ s+ t + i+ i  +r  ++e +   +  +  +++ +  ++ + +  + +++n+ l + + +++ +   s+   +  ++++gs++ ++    ++ ++ ++l + + + +++  + er+  +++ ep++   + +++++L+  ++++++vtFrY+   ++++Ld++sl++epG+  a+vG+SG GKStl+ lLL +  P++G +l  G d ++l++++v +++GvV Q+++l+ ++i enia ga+  t  e   aa+ a   + i++   g  T + e g+ lSGGQ+QR+ +Aral rkPr+l +DEATSALD ++ a+V ++l++l      t +++AHRLST+ na+ i v++ Gr++++G++ +Lla k+G++a+l+++Q+
  MMETSP1137-20121227|5665_1 372 TVTSILSLFLPNFQGQIMDHVIagrtactPSATeaeqndechdaRQSFMDVVLLYIACSIALGFLGGVRSLCFNLIGRRITVSVRNTLFRSVIIQDIAFFDGMRTGDLTQRMTSdVRAMVAPVTTTLSTLISNSMLLVGGVAMCFVTSWQLSMVAYTTVLPIMHVTEAYAKWSGKINRQIFQHYSDASAATNEAISNIRTVRAVSTEAHEADKVGECLAQALRKGVRDAFFGAFSAAFNNYLDLGAGVLILWYGGSIAmsKDGSITVGSLIKYQLYWNMINNSWQALNNLINSXTRAAGAAERVLSLVDLEPDIPLaAGKRADDLHsWSVTIEEVTFRYQMRpQQTILDRLSLHVEPGTVCALVGKSGGGKSTLVHLLLRYYDPQEGRILLGGVDYRTLNLSSVHQRIGVVSQETQLFNATIAENIAYGAPaHTEAELLRAAESAQAHQFISSFEDGYATRVGERGQRLSGGQKQRIAVARALLRKPRLLCLDEATSALDAESEALVQKALDALiwtgDHTVVLVAHRLSTVVNAHAIAVVDGGRIAQTGTHAQLLAdKHGIYASLVAKQM 942
                 455666777777777777776644444444332111112222227889***************************************************************875366666666665555555566667778888***************************************************************************************************999999998876654448899*************************************************9751456677775169**********96527889***********************************************************************************9899999****************************************************************************94444467899******************************988699**********8 PP

>> TIGR03796  NHLM_micro_ABC1: NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  278.8   3.3   2.5e-85   1.8e-83     187     709 ..     414     938 ..     385     939 .. 0.92

  Alignments for each domain:
  == domain 1    score: 278.8 bits;  conditional E-value: 2.5e-85
   TIGR03796 187 eeaqewlrplllgllltallqvvltllqlallrrleiklavassarflwhilrlPveffaqRaageiasRvqlndk.vaellsgqlattvldlvlvvfyalvmllydlvlaliaialaainvlalqlvsrkrvdanrrlqqdagklagvaiaglqsietlkAsglesdffsrwaGyqakllnaeqelgvatallsvlpelltsltsalilvvgglrvl..egeltiGmlvafqsllasflepveklvglvselqeleadlerldDvlenpvdeeleeeeekaaeseekekLsGkvelrnvtfgysal.eapliedfslslkpGqrvAlvGgsGsGkstiaklvaGlyepwsGeilfDgkpreeiprevlanslalvdqdivlfegtvrdnltlwdetipeedlvrAakDAaihdvilarpggyeaelaegganlsGGqrqRleiARaLvknPsiLilDEatsaLDaetEkaidenlr....rRgctciivaHRLstiRdcdeiivlerGkvverGtHeella.kegaYarLi 709
                 + +q+++ ++ll +++++ l ++l  +++   + + ++++v++ +++++ ++   + ff+   +g++++R++++ + + + ++ +l+t + + +l+v  +++ ++ +++l+++a ++ +  + + ++ ++   + nr++ q+++ +++++ +++++i t++A ++e++   ++    a++l++  +     a+  ++ + l   + +lil+ gg   +  +g++t+G l+ +q   + +++  ++l +l+++    ++  er+  +++ + d  l + +++++ +      s +v++++vtf y++  ++ +++ +sl+++pG+  AlvG sG Gkst+ +l+   y+p +G+il+ g++ ++++ + + + + +v+q+ +lf++t+ +n++   ++ +e++l+rAa+ A+ h+ i + ++gy++++ e g+ lsGGq+qR+ +ARaL ++P +L lDEatsaLDae E  ++++l         t+++vaHRLst+ +++ i v++ G++ ++GtH +lla k+g Ya+L+
  MMETSP1137-20121227|5665_1 414 DARQSFMDVVLLYIACSIAL-GFLGGVRSLCFNLIGRRITVSVRNTLFRSVIIQDIAFFDGMRTGDLTQRMTSDVRaMVAPVTTTLSTLISNSMLLVGGVAMCFVTSWQLSMVAYTTVLPIMHVTEAYAKWSGKINRQIFQHYSDASAATNEAISNIRTVRAVSTEAHEADKVGECLAQALRKGVRDAFFGAFSAAFNNYLDLGAGVLILWYGGSIAMskDGSITVGSLIKYQLYWNMINNSWQALNNLINSXTRAAGAAERVLSLVDLEPDIPLAAGKRADDLH------SWSVTIEEVTFRYQMRpQQTILDRLSLHVEPGTVCALVGKSGGGKSTLVHLLLRYYDPQEGRILLGGVDYRTLNLSSVHQRIGVVSQETQLFNATIAENIAYGAPAHTEAELLRAAESAQAHQFISSFEDGYATRVGERGQRLSGGQKQRIAVARALLRKPRLLCLDEATSALDAESEALVQKALDaliwTGDHTVVLVAHRLSTVVNAHAIAVVDGGRIAQTGTHAQLLAdKHGIYASLV 938
                 67888999999888777666.899***********************************************99865145556777777777777777778888999**********99999999***********************************************************99999999999999*****99**********99996679************************************************999999833333333......458**********865278899************************************************************************************************************************************************************99887765222156789*********************************987699*****98 PP

>> TIGR03375  type_I_sec_LssB: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  260.9   1.2     7e-80     5e-78     205     691 ..     436     929 ..     417     932 .. 0.91

  Alignments for each domain:
  == domain 1    score: 260.9 bits;  conditional E-value: 7e-80
   TIGR03375 205 lkllRsylldvagkkvdlilsaklfervlglrlea.rpasvGsfasqlrefesvrdflt..satltalvDLpfvllfllviali.ggplvlvplvavplvllvglllqkplsklaeeslresaqknallveslegletikalnaesrlqkkWeqvvaalakvslklrllsalltnlaalvqqlvsvavvvvGvyli..aegeltmGgLiAaviLsgRalaPlaqlaglltryqqaktalesldelmklpvereeekrllsreklkGeielknvsfkYpee.ekaaLknvslkikpGekvaiiGriGsGKstllklllglyepteGsvlldgvdirqidpadlrrnigyvpqdvtLfyGtlrdNialgapaaedeellraaelaGvtefvkkhpkGldlqigerGesLSgGQrqavalaRallkdppillLDEPtsalDnsseekllerLkella..dkTlvlvtHrtslLelvdriivldkGrivadGpkdevlea 691
                 l  +Rs + +++g+++ +++ ++lf+ v+  +++  +  ++G +++++     vr +++   +tl++l+   ++l+  + + ++ +++l +v  ++v+ ++ v+ +  k   k+ ++  ++ +   a   e+++++ t++a++ e++   k  +++a+  + +++  ++ a++  + +++   + v+++  G      ++g++t+G+Li   +       + + l++l+   ++a+ a e++ +l++l+ + + ++     +  + ++ +++v+f+Y+ + +++ L+ +sl+++pG   a++G+ G GKstl +lll+ y+p+eG++ll gvd+r+++ + + ++ig+v+q+++Lf++t+ +Nia+gapa +++ellraae a +++f+++  +G+ + +gerG+ LSgGQ+q +a+aRall++p++l LDE tsalD++se+ + ++L +l+   d+T+vlv+Hr s +  +  i v+d Gri   G+++++l+ 
  MMETSP1137-20121227|5665_1 436 LGGVRSLCFNLIGRRITVSVRNTLFRSVIIQDIAFfDGMRTGDLTQRMT--SDVRAMVApvTTTLSTLISNSMLLVGGVAMCFVtSWQLSMVAYTTVLPIMHVTEAYAKWSGKINRQIFQHYSDASAATNEAISNIRTVRAVSTEAHEADKVGECLAQALRKGVRDAFFGAFSAAFNNYLDLGAGVLILWYGGSIAmsKDGSITVGSLIKYQLYWNMINNSWQALNNLINSXTRAAGAAERVLSLVDLEPDIPLAAGKRADDLHSWSVTIEEVTFRYQMRpQQTILDRLSLHVEPGTVCALVGKSGGGKSTLVHLLLRYYDPQEGRILLGGVDYRTLNLSSVHQRIGVVSQETQLFNATIAENIAYGAPAHTEAELLRAAESAQAHQFISSFEDGYATRVGERGQRLSGGQKQRIAVARALLRKPRLLCLDEATSALDAESEALVQKALDALIWtgDHTVVLVAHRLSTVVNAHAIAVVDGGRIAQTGTHAQLLAD 929
                 6679*************************99998626789*****9987..599**9983346788899888888875555555167799998877766666666666666777778888888889999***********************************************************9999765534799**************9999**********************************9999999999999***********866266779********************************************************************************************************************************************************************976556**********************************999875 PP

>> TIGR01193  bacteriocin_ABC: ABC-type bacteriocin transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.1       2.8     2e+02     287     325 ..     353     390 ..     349     397 .. 0.80
   2 !  247.7   0.0   7.8e-76   5.6e-74     212     707 ..     436     939 ..     415     940 .. 0.88

  Alignments for each domain:
  == domain 1    score: -2.0 bits;  conditional E-value: 2.8
   TIGR01193 287 glvlvlqniklfllslvaiPvyaviiilfkktfeklnkd 325
                 g+ l++    lf+l+l+++ v  +i+ lf   f+ +  d
  MMETSP1137-20121227|5665_1 353 GMKLAYPHLALFILALLCVTVT-SILSLFLPNFQGQIMD 390
                 6778888999*********996.5778999999887665 PP

  == domain 2    score: 247.7 bits;  conditional E-value: 7.8e-76
   TIGR01193 212 lsyikafllivlgqrlsidiilsyikhlfelPmsffstrrvGeivsrft.daskiidalastilslfldlsilvivglvlvl.qniklfllslvaiPvyaviiilfkktfeklnkdameanavlnssiiedlnGietiksltseeerykkidsefadylekslkyakaeavqqalkavlklilnvvilwvGallvire..kltlGqlltfnallsyflnPleniinlqpklqaarvannrlnevylvdsefkekkkltelenlngdievndvsysyGy..gsevledislkikknekitlvGlsGsGkstlakllvkffqaesGeillngkslkdidkhelrqlinylPqePfifsGsilenlllgakenvsqeeikkaveiaeikddieklplGyqtelseeassisgGqkqrlalarallsdskvlildestsnldllte...kkivenllklkdktiifvahrlsvakksdkiivldeGkiieqGshkellk.enGfyaslih 707
                 l  +++  ++++g+r+++ +  +  + ++   ++ff   r+G+++ r+t d+ +++  + +t+ls ++  s+l++ g+ + +    +l +++  ++   + +  ++ k   k+n++  +  +  +++  e ++ i t++++++e+++ +k+ + +a+ l+k ++ a   a   a    l+l   v+ilw+G  + +++   +t+G l+ +++      n  + + nl     +a  a +r+  +  ++ +      + +      ++++++v+++y +   + +l+ +sl+++   + +lvG sG Gkstl+ ll++++++++G+ill+g++ + ++ +++ q i  + qe  +f+ +i en+  ga  + ++ e+ +a e a+ ++ i  ++ Gy t++ e ++ +sgGqkqr+a+arall + ++l lde+ts ld   e   +k ++ l+   d t+++vahrls   +++ i v+d G+i ++G+h +ll+ ++G yasl+ 
  MMETSP1137-20121227|5665_1 436 LGGVRSLCFNLIGRRITVSVRNTLFRSVIIQDIAFFDGMRTGDLTQRMTsDVRAMVAPV-TTTLSTLISNSMLLVGGVAMCFvTSWQLSMVAYTTVLPIMHVTEAYAKWSGKINRQIFQHYSDASAATNEAISNIRTVRAVSTEAHEADKVGECLAQALRKGVRDAFFGAFSAAFNNYLDLGAGVLILWYGGSIAMSKdgSITVGSLIKYQLYWNMINNSWQALNNLINSXTRAAGAAERVLSLVDLEPDIPLAAGKRADDLHSWSVTIEEVTFRYQMrpQQTILDRLSLHVEPGTVCALVGKSGGGKSTLVHLLLRYYDPQEGRILLGGVDYRTLNLSSVHQRIGVVSQETQLFNATIAENIAYGAPAH-TEAELLRAAESAQAHQFISSFEDGYATRVGERGQRLSGGQKQRIAVARALLRKPRLLCLDEATSALDAESEalvQKALDALIWTGDHTVVLVAHRLSTVVNAHAIAVVDGGRIAQTGTHAQLLAdKHGIYASLVA 939
                 45578889999************************************973677766666.566777777788888777665515678999988776555678899******************************************************************************************986336**********9999988888877777777777777778765554445555444444566677789999****9999833578**********************************************************************************99766.567789999**********************************************************98775557999*******************************************996267****9985 PP

>> TIGR02868  CydC: thiol reductant ABC exporter, CydC subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  226.4   3.9   1.9e-69   1.4e-67      83     530 .]     450     900 ..     447     900 .. 0.90

  Alignments for each domain:
  == domain 1    score: 226.4 bits;  conditional E-value: 1.9e-69
   TIGR02868  83 rslgelRvrvYerLaraalallarlrrGdlLarlvaDvdalqdllvRvivPlvvAlvvalaavaliallsvaaalvlaaallvalvvaplvslraarsaeqalarlrselaaqlldllegaaelvvaGaleavlaqveeaereltraekraaaaealgaaltlla.aGlavllallvgveava..dgrlapvalAvlvLlpLaafealaalpaAaqqltrvraaaeRieevldakvevaeasapaaeaaasekptlelrdlsvsypgaee..vlkgvsldlepGervavvGasGaGKstLlallaglldplkGevtldgvsvaslsesevrrvvsvlaqdaHlFdttvreNlrlarpdatdeellaaLervgLadwlraLpdGldtklgeggarlSGGerqRlalARaLladapvllLDEPtehLDaeteeelledLlaa...eegrtvvlvthrl 530
                 r+  ++R  +++++  +  a+   +r+Gdl +r+++Dv a+ + +  +++ l++  ++ +  va+ ++ s+++ +v+  ++l ++ v  + + ++ + + q  ++  s  +a++ +++++  + ++    ++  ++v e  ++++r   r+a + a++aa +  + +G+ vl  l+ g++  +  dg+++   l    L    + +  +al + +++ tr++ aaeR+  + d +++ + a+ ++a ++ s   ++++++++++y+  ++  +l+++sl++epG   a+vG+sG GKstL++ll++  dp++G+++l gv+  +l+ s v +++ v+ q+  lF++t+ eN+  ++p  t++ell+a e+++ ++ + +++dG+ t++ge+g+rlSGG++qR+a+ARaLl + ++l LDE t  LDae e+ + ++L +a   + ++tvvlv+hrl
  MMETSP1137-20121227|5665_1 450 RITVSVRNTLFRSVIIQDIAFFDGMRTGDLTQRMTSDVRAMVAPVTTTLSTLISNSMLLVGGVAMCFVTSWQLSMVAYTTVLPIMHVTEAYAKWSGKINRQIFQH-YSDASAATNEAISNIRTVRAVSTEAHEADKVGECLAQALRKGVRDAFFGAFSAAFNNYLdLGAGVL-ILWYGGSIAMskDGSITVGSLIKYQLYWNMINNSWQALNNLINSXTRAAGAAERVLSLVDLEPDIPLAAGKRADDLHS--WSVTIEEVTFRYQMRPQqtILDRLSLHVEPGTVCALVGKSGGGKSTLVHLLLRYYDPQEGRILLGGVDYRTLNLSSVHQRIGVVSQETQLFNATIAENIAYGAPAHTEAELLRAAESAQAHQFISSFEDGYATRVGERGQRLSGGQKQRIAVARALLRKPRLLCLDEATSALDAESEALVQKAL-DAliwTGDHTVVLVAHRL 900
                 566789****************************************************************************99999999999999988777665.67789999**********************************************976551666665.6788774322114555555555555555578999****************************9999999999999888..8888888888887665556***********************************************************************************************************************************************************9876555555.4412256778******86 PP

>> TIGR01192  chvA: glucan exporter ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  221.3   1.4   6.9e-68     5e-66     137     569 ..     497     940 ..     480     952 .. 0.82

  Alignments for each domain:
  == domain 1    score: 221.3 bits;  conditional E-value: 6.9e-68
   TIGR01192 137 hlatfval.lll...ipvalamdlrlslvlvvlgivyvliaklvmsrtkegqaaveeyyhsvfkhvsdsisnvsvvhsynrieaetkalkkftekllsaqypvldwwalasglnriastislviilvigt.v.lvkkgelsvgeviafigfanlligrldqlkafvtqivearakledffdledsvkereepadarelknvkgavefrdisfefans.sqgvrd.vsfeakagqtvaivgptgagkttlinllqrvydpksgqilidgvdiatvtreslrksiatvfqdagllnrsirenirlgredatdeevveaakaaaasdfiekrlkgydtlvgergnrlsggerqrlaiarailknapilvldeatsaldvetearvkdaidal..rknrttfiiahrlstvreadlvlfldqgrliekgsfde.liqkdgrfakllra 569
                  l+t+++  +ll   + +++   ++ls+v  +  +  + ++    + + + +  + ++y +  +   ++isn+  v++      e+ ++ +   + l   +    + a+++++n      + v+il  g  + + k g ++vg +i +  + n++    + l+++++    a    e  ++l d   +    a  r  +  + +v +++++f +    +q + d +s+++  g   a+vg +g gk+tl+ ll r ydp++g+il+ gvd  t++  s+ + i  v q++ l+n +i eni  g    t++e++ aa++a a++fi++  +gy t vgerg+rlsgg++qr+a+ara+l+   +l ldeatsald e+ea v++a+dal  + + t  ++ahrlstv +a  +  +d gr+ + g+  + l++k+g +a+l+ +
  MMETSP1137-20121227|5665_1 497 TLSTLISNsMLLvggVAMCFVTSWQLSMVAYTTVLPIMHVTEAYAKWSGKINRQIFQHYSDASAATNEAISNIRTVRAVSTEAHEADKVGECLAQALRKGVRDAFFGAFSAAFNNYLDLGAGVLILWYGGsIaMSKDGSITVGSLIKYQLYWNMINNSWQALNNLINSXTRAAGAAERVLSLVDLEPDIPLAAGKRADDLHSWSVTIEEVTFRYQMRpQQTILDrLSLHVEPGTVCALVGKSGGGKSTLVHLLLRYYDPQEGRILLGGVDYRTLNLSSVHQRIGVVSQETQLFNATIAENIAYGAPAHTEAELLRAAESAQAHQFISSFEDGYATRVGERGQRLSGGQKQRIAVARALLRKPRLLCLDEATSALDAESEALVQKALDALiwTGDHTVVLVAHRLSTVVNAHAIAVVDGGRIAQTGTHAQlLADKHGIYASLVAK 940
                 566666531333111455666788888887554444444444444445555566788899999999999999999988666555555555555555554444445679*****999888888888877751325688*********************************99999999999999888887777665555556667777888877654155555449******************************************************************************************************************************************************************9445799*******************************977257899999999765 PP

>> TIGR02857  CydD: thiol reductant ABC exporter, CydD subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0       2.4   1.8e+02     232     252 ..      98     118 ..      72     125 .. 0.88
   2 !   10.6   1.1    0.0006     0.043      47     215 ..     423     588 ..     362     607 .. 0.70
   3 !  218.1   1.3   7.7e-67   5.5e-65     289     527 ..     667     910 ..     663     912 .. 0.96

  Alignments for each domain:
  == domain 1    score: -1.4 bits;  conditional E-value: 2.4
   TIGR02857 232 lvLellatlsvAlvAVyiGlr 252
                 +vL + a l +A +A y+G  
  MMETSP1137-20121227|5665_1  98 FVLRITAVLTIAXIACYVGTP 118
                 899***************975 PP

  == domain 2    score: 10.6 bits;  conditional E-value: 0.0006
   TIGR02857  47 laalalvlllRallawlkeaaaaraaaevksqlrerllekvaalGpavlqkkksgelatlllegvdalddYfarylpqlvlavivplvilaavltadwisalillltlPlipiFmiLiGsaaqaa...arkqlaalsrLsghfldlvrglptLklfgrakaeaaaikrisee 215
                 +++ +++ ++   l+ ++    + ++ +++  +r++l++ v  +  a   ++++g+l++ ++  v+a+ + ++  l +l++  ++ +  +a+ ++ +w+  ++   t+  +pi m ++  +a+     +r+ ++  s  s++  + ++ + t+++   + +ea+++   +e 
  MMETSP1137-20121227|5665_1 423 VLLYIACSIALGFLGGVRSLCFNLIGRRITVSVRNTLFRSVIIQDIAFFDGMRTGDLTQRMTSDVRAMVAPVTTTLSTLISNSMLLVGGVAMCFVTSWQLSMVAYTTV--LPI-MHVTEAYAKWSgkiNRQIFQHYSDASAATNEAISNIRTVRAVSTEAHEADKV---GEC 588
                 233333333334444445555567899***********************************************************************9888877776..454.6666666665500045555555555555556666666666655555555555...443 PP

  == domain 3    score: 218.1 bits;  conditional E-value: 7.7e-67
   TIGR02857 289 egvaaaealvevld.aeeqpeaekapltaaassslelenvsvayegrk..palkevsltvepgelvalvGaSGaGKstllklllgfvepteGailvngaelaeldadswrkqiawvpQkPllfegtvaenirlarkdaseaevkealeragldelvkalpqgleteiGergagLSgGqrqRlaLArallrdapllllDEPtahLDaeteaevlealrela..egrtvllvaHrlalaeladkiv 527
                  +  aae + +++d +   p+a  + +++ +s+s+++e+v+++y+ r    +l+ +sl+vepg++ alvG+SG GKstl++lll+  +p+eG+il++g++ + l+ +s +++i+ v+Q+ +lf++t+aeni+ + +  +eae+ +a+e a++++++++ ++g++t++Gerg++LSgGq+qR+a+Arallr+ +ll lDE t++LDae+ea v++al++l+    +tv+lvaHrl+++ +a  i 
  MMETSP1137-20121227|5665_1 667 RAAGAAERVLSLVDlEPDIPLAAGKRADDLHSWSVTIEEVTFRYQMRPqqTILDRLSLHVEPGTVCALVGKSGGGKSTLVHLLLRYYDPQEGRILLGGVDYRTLNLSSVHQRIGVVSQETQLFNATIAENIAYGAPAHTEAELLRAAESAQAHQFISSFEDGYATRVGERGQRLSGGQKQRIAVARALLRKPRLLCLDEATSALDAESEALVQKALDALIwtGDHTVVLVAHRLSTVVNAHAIA 910
                 577899********99999*************************666555799**********************************************************************************************************************************************************************976789***********99998876 PP

>> TIGR01842  type_I_sec_PrtD: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  197.3   4.5   1.2e-60   8.5e-59      43     542 ..     417     928 ..     360     929 .. 0.85

  Alignments for each domain:
  == domain 1    score: 197.3 bits;  conditional E-value: 1.2e-60
   TIGR01842  43 stLlvltvlvvvlylvlglleavRskvlvrigekldkalnkkifkaaieatlerkkk..eslqalrDldqlrqFlt..gtgliaffDlPwlpi.yllvvfllhpylGllalvgavvlvalallneaatkkklkeateasikanklldsalrnaeviealgmlkeltkrWeklkskalsaqsaasdragalsalskvlRivlqslvlglGaylaikg..eitaGmiiagsilvgraLaPidqaievWkqfsaarkaykrlkelleelp...areealklPepegelevenvslvp.peekkktlkgisfalkaGealaiiGpsgsGkssLarllvGvwlpasGsvrlDgadlkqwdretlGksiGYlPqdveLfeGtvaeniaRfeenadaekvieaaklagvhelilrlpkGYdteigegGaaLsgGqrqRiaLaRalygdPklvvLDePnanLDeeGeqalakalkelkark.itvvvithrpsllelvdkilvlkdGalkafGereevlk 542
                 ++ + +++l +   ++lg+l  vRs  +  ig ++ +++++++f+++i + ++  ++  ++  + r  + +r  ++  +t+l +++   +l +  ++++f+    l ++a ++++ ++ ++   ++ + k  ++  +  + a+   ++a  n+  ++a++   +   +  +  ++al +    +  +++ +a+  +l + + +l+l  G+ +a+++  +it G++i   +    +    + + +   + + a+ a +r+ +l++  p    ++ + +      ++++e+v+++   + ++++l  +s+ +++G + a++G sg Gks+L++ll+  + p++G++ l g+d +  +  ++ ++iG + q+ +Lf+ t+aenia      ++ +++ aa+ a++h++i ++++GY t +ge+G+ LsgGq+qRia+aRal ++P+l+ LDe  + LD+e e+ + kal +l   +  tvv+++hr s +  +  i+v++ G++++ G++ ++l+
  MMETSP1137-20121227|5665_1 417 QSFMDVVLLYIACSIALGFLGGVRSLCFNLIGRRITVSVRNTLFRSVIIQDIAFFDGmrTGDLTQRMTSDVRAMVApvTTTLSTLISNSMLLVgGVAMCFVTSWQLSMVAYTTVLPIMHVTEAYAKWSGKINRQIFQHYSDASAATNEAISNIRTVRAVSTEAHEADKVGECLAQALRKGVRDAFFGAFSAAFNNYLDLGAGVLILWYGGSIAMSKdgSITVGSLIKYQLYWNMINNSWQALNNLINSXTRAAGAAERVLSLVDLEPdipLAAGKRADDLHSWSVTIEEVTFRYqMRPQQTILDRLSLHVEPGTVCALVGKSGGGKSTLVHLLLRYYDPQEGRILLGGVDYRTLNLSSVHQRIGVVSQETQLFNATIAENIAYGAPAHTEAELLRAAESAQAHQFISSFEDGYATRVGERGQRLSGGQKQRIAVARALLRKPRLLCLDEATSALDAESEALVQKALDALIWTGdHTVVLVAHRLSTVVNAHAIAVVDGGRIAQTGTHAQLLA 928
                 5566778888999999********************************9998543320033333333344555554223467777777666662589999999999****9999999***9999999999999999999999999**************999888888888888888887777777777777788888888899********99764489******999877777766666666667777777788888887776651114444444445567899****997515678899*********************************************************************************99999999****************************************************************************98765528999****************************999886 PP

>> TIGR00957  MRP_assoc_pro: multi drug resistance-associated protein (MRP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  139.5   2.2   2.4e-43   1.8e-41     992    1516 ..     408     937 ..     367     942 .. 0.79

  Alignments for each domain:
  == domain 1    score: 139.5 bits;  conditional E-value: 2.4e-43
   TIGR00957  992 tddavvdgtqentklrlsvyaalgilqgiavlgysmavsiggilasrvlhldllhnvlrspmsffertpsgnlvnrfskeldvvdsvlaevikmll.gslfnvigavivillatplaaviilplallyflvqrfyvassrqlkrlesvsrspvyshfnetllgvsvirafeeq.erfiiqsdlkvdenqkayypsivanrwlavr..lel.vgncivlfaalfavisrsslsaglvglsvsyslqvtayln.w..lvrmsseletnivaverlkeysetekeapwqieeta.ppsswpks.grvefrnyslryredldlvlrdlnvtieggekvgivgrtgagkssltlglfrinesaegeiiidglniakiglhdlrfkltiipqdpvlfsgslrmnldpfs.qysdeevwlalelahlkdfvsalpdkldfecaeggenlsvgqrqlvclarallrktkilvldeataavdletdnliqstirtqf..edctvltiahrlntimdytrvlvldkgevaefdapsellqqr.gifysm 1516
                   +d   d++q+  ++ l +y a  i  g++    s++  + g   +  +   l+ +v+    +ff+   +g+l +r++ ++ ++   ++  +  l+ +s++  +g v + ++++  ++++     l  + v   y+  s +++r      s   +  ne++  +  +ra   + ++  ++ +   ++ +k +          a +  l+l  g  i+ +   +a+    s++   vg  + y l   +  n w  l  +         a er+    + e + p    + a   +sw  +  +v fr y +r +   + +l  l++++e g    +vg++g gks+l   l+r  +  eg i + g++   + l  +  ++ ++ q+  lf  ++  n+   +  +++ e+  a e a  ++f+s+  d+   +  e g+ ls gq+q + +arallrk ++l ldeat+a+d e++ l+q ++ + +   d tv+ +ahrl t+++   + v+d g +a+ ++ ++ll+++ gi+ s+
  MMETSP1137-20121227|5665_1  408 QNDECHDARQSFMDVVL-LYIACSIALGFLGGVRSLCFNLIGRRITVSVRNTLFRSVIIQDIAFFDGMRTGDLTQRMTSDVRAMVAPVTTTLSTLIsNSML-LVGGVAMCFVTSWQLSMVAYTTVLPIMHVTEAYAKWSGKINRQIFQHYSDASAATNEAISNIRTVRAVSTEaHEADKVGECLAQALRKGVRDAFFGAFSAAFNnyLDLgAGVLILWYGGSIAMSKDGSIT---VGSLIKYQLYWNMINNsWqaLNNLINSXTRAAGAAERVLSLVDLEPDIPLAAGKRAdDLHSWSVTiEEVTFR-YQMRPQ---QTILDRLSLHVEPGTVCALVGKSGGGKSTLVHLLLRYYDPQEGRILLGGVDYRTLNLSSVHQRIGVVSQETQLFNATIAENIAYGApAHTEAELLRAAESAQAHQFISSFEDGYATRVGERGQRLSGGQKQRIAVARALLRKPRLLCLDEATSALDAESEALVQKALDALIwtGDHTVVLVAHRLSTVVNAHAIAVVDGGRIAQTGTHAQLLADKhGIYASL 937 
                  57888899999999877.799999*****9999******99*99999*********************************987666555555555515665.5566666666666666666667777788999***********9999999999999**9999999999865413444445554555444444333332222222112220233444445555554445554...55566666655544442211555566666677899**************99866551457886431456665.555443...56899****************************************************************************98544278999*************************************************************************99876523789***********************************98653888775 PP

>> TIGR03864  PQQ_ABC_ATP: ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  127.3   1.9   1.8e-39   1.3e-37       2     224 ..     701     931 ..     700     941 .. 0.88

  Alignments for each domain:
  == domain 1    score: 127.3 bits;  conditional E-value: 1.8e-39
   TIGR03864   2 leveglsfayg...krralddvsltvakgefvaLLGpnGaGkstLfslltrLyeakegeikvaGldlrrapk.ealarlGvvfqqstlDldlsveqnlryhaaLhG...lsraeaeerieealarl..glaeraeekvreLnGGhrrrveiarallhePklLLlDeatvGLDiesraalveevrelvreeglsvLWathlvdeveaedrlvvlhkGkvlaqGaaaelaaead 224
                 +++e+++f+y    ++++ld +sl+v++g+++aL+G  G GkstL+ ll r y+ +eg+i + G+d+r+ +  ++ +r+Gvv q++ l  + ++++n+ y a  h    l ra+ +++ ++ ++ +  g a r  e+ ++L+GG+++r+ +arall +P+lL lDeat  LD+es a +++++ +l+ + + +v+   h +  v ++  + v++ G+++++G+ a+l a+++
  MMETSP1137-20121227|5665_1 701 VTIEEVTFRYQmrpQQTILDRLSLHVEPGTVCALVGKSGGGKSTLVHLLLRYYDPQEGRILLGGVDYRTLNLsSVHQRIGVVSQETQL-FNATIAENIAYGAPAHTeaeLLRAAESAQAHQFISSFedGYATRVGERGQRLSGGQKQRIAVARALLRKPRLLCLDEATSALDAESEALVQKALDALIWTGDHTVVLVAHRLSTVVNAHAIAVVDGGRIAQTGTHAQLLADKH 931
                 678999999973325689*************************************************99765156789****987666.899********999996333555555556666655542278999*********************************************************************************************998765 PP

>> TIGR00972  3a0107s01c2: phosphate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  114.0   0.0     2e-35   1.5e-33       5     232 ..     704     928 ..     700     936 .. 0.89

  Alignments for each domain:
  == domain 1    score: 114.0 bits;  conditional E-value: 2e-35
   TIGR00972   5 knlklfyg...ekealkdvnleikknkvtaliGpsGcGkstllrslnrlndlveevrieGkvllegkdiydkkldvvelrkkvGmvfqkpnpfpmsiydnvayglrlkgikdkkeldeiveesLkkaalwdevkdklkksalsLsGGqqqrlciaralavePevlLlDePtsaLDpiatekieeliqeL..kkkytivivthnmqqaarvsdktaffleGelveegeteqife 232
                 +++++ y+   +++ l+ ++l+++  +v al+G+sG Gkstl++ l r  d       eG++ll g d    +l+  ++ +++G+v q+ + f+ +i +n+ayg  ++   +  +  e +++    +++ d   +++ + +++LsGGq+qr+++aral  +P +l lDe tsaLD+++ + +++ ++ L    + t+v+v h ++     +  +a++  G++  +g+ +q++ 
  MMETSP1137-20121227|5665_1 704 EEVTFRYQmrpQQTILDRLSLHVEPGTVCALVGKSGGGKSTLVHLLLRYYDPQ-----EGRILLGGVDYR--TLNLSSVHQRIGVVSQETQLFNATIAENIAYGAPAHTEAELLRAAESAQAHQFISSFEDGYATRVGERGQRLSGGQKQRIAVARALLRKPRLLCLDEATSALDAESEALVQKALDALiwTGDHTVVLVAHRLSTVVN-AHAIAVVDGGRIAQTGTHAQLLA 928
                 555555542225678999*********************************98.....899999998854..47889999****************************98888888999999999999************************************************************944567**********97765.67788888899999999888875 PP

>> TIGR03258  PhnT: 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  113.3   1.2   3.6e-35   2.6e-33       9     229 ..     701     928 ..     696     942 .. 0.88

  Alignments for each domain:
  == domain 1    score: 113.3 bits;  conditional E-value: 3.6e-35
   TIGR03258   9 vvleslrvaygar...vvlddlsleieaGellallGksGsGkttllravaGfvkadGGrllvadrdlt..hlppykrnlallvqnyalfphlkveenvafGlrarkqskaliaervadalklvq.lsd.aaarlp...aqlsGGqqqrvalaralvvrpdvllldeplsaldaqlrasvveelkalhrelpeltvlyvthdrdealvladkillmkeGslialGetralyd 229
                 v +e+++ +y+ r   ++ld lsl++e+G + al+GksG Gk+tl+ ++  +  ++ Gr+l+++ d     l    + ++++ q+  lf   ++ en+a+G  a+  ++ l a   a+a + +  + d +a+r+    ++lsGGq+qr+a+aral  +p++l lde  salda+  a v++ l al     + tv+ v+h r  ++v a  i ++  G++++ G+  +l  
  MMETSP1137-20121227|5665_1 701 VTIEEVTFRYQMRpqqTILDRLSLHVEPGTVCALVGKSGGGKSTLVHLLLRYYDPQEGRILLGGVDYRtlNLSSVHQRIGVVSQETQLFN-ATIAENIAYGAPAHTEAELLRAAESAQAHQFISsFEDgYATRVGergQRLSGGQKQRIAVARALLRKPRLLCLDEATSALDAESEALVQKALDALIWT-GDHTVVLVAH-RLSTVVNAHAIAVVDGGRIAQTGTHAQLLA 928
                 78999999998643349************************************************9861245677888***********7.699**************************99862444477776522268**********************************************865.789******9.6678999*****************999865 PP

>> TIGR02769  nickel_nikE: nickel import ATP-binding protein NikE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  109.5   0.6   5.8e-34   4.2e-32      20     249 ..     712     937 ..     700     947 .. 0.91

  Alignments for each domain:
  == domain 1    score: 109.5 bits;  conditional E-value: 5.8e-34
   TIGR02769  20 kkqrkavldnvslsleeGetvallGrsGaGkstlarlllGlekPakGevsfrGqdlakldrkqrkafrrdvqlvfqdsisavnprksvreiigePlrhltsldeserkariaellelve.lrsevldklPrqlsGGqlqriniaralavePklivldeavsnldlvlqasilellkklkqefGlaylfithdlrlvqkfaqrvlvldeGqiveeikvaellsfkhpagrll 249
                  + ++++ld +sl++e G   al+G+sG Gkstl +lll    P++G++   G+d   l+ ++   +++ + +v q++   +n+  + +   g P +   +l ++++ a+++++++  e   +  +  + ++lsGGq qri++aral  +P+l+ ldea s ld    a + + l +l   +  ++++++h l+ v + a+ ++v+d+G+i ++ + a+ll+ kh +   l
  MMETSP1137-20121227|5665_1 712 MRPQQTILDRLSLHVEPGTVCALVGKSGGGKSTLVHLLLRYYDPQEGRILLGGVDYRTLNLSS---VHQRIGVVSQETQ-LFNATIAENIAYGAPAHTEAELLRAAESAQAHQFISSFEdGYATRVGERGQRLSGGQKQRIAVARALLRKPRLLCLDEATSALDAESEALVQKALDALIWTGDHTVVLVAHRLSTVVN-AHAIAVVDGGRIAQTGTHAQLLADKHGIYASL 937
                 467899*****************************************************9876...6678******975.79**99999999*******************999998761567889999*****************************************************************9987.7889*******************999876555 PP

>> TIGR02673  FtsE: cell division ATP-binding protein FtsE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  107.7   0.1   1.9e-33   1.3e-31       2     204 ..     701     907 ..     700     915 .. 0.84

  Alignments for each domain:
  == domain 1    score: 107.7 bits;  conditional E-value: 1.9e-33
   TIGR02673   2 ielekvskeya..agveaLkdvslkiekgeflfltGasGaGkttllklllgaekpsrGevevagedvarlrerelpllRrkigvvfqDfkllkdrtvlenvalalevrgkkeeeiq...krveevlelv..gledkakalpeelsgGeqqRvaiaRaivnkPelllaDePtGnlDdelserildllkelnkrG.ttvivathdeelvervk 204
                 +++e+v+++y+   + ++L+++sl++e+g ++ l+G+sG Gk+tl++lll +  p++G++ + g d ++l   +l+++ ++igvv q+ +l+ + t++en+a     + + e        + ++ ++    g + ++ +  ++lsgG +qR+a+aRa+++kP+ll  De t  lD+e ++ + + l +l  +G  tv++++h  + v + +
  MMETSP1137-20121227|5665_1 701 VTIEEVTFRYQmrPQQTILDRLSLHVEPGTVCALVGKSGGGKSTLVHLLLRYYDPQEGRILLGGVDYRTL---NLSSVHQRIGVVSQETQLF-NATIAENIAYGAPAHTEAELLRAaesAQAHQFISSFedGYATRVGERGQRLSGGQKQRIAVARALLRKPRLLCLDEATSALDAESEALVQKALDALIWTGdHTVVLVAHRLSTVVNAH 907
                 67899*****94346789**********************************************987776...688899**********987.679******97766655543333000344444444344789999****************************************************9999569******988776554 PP

>> TIGR01271  CFTR_protein: cystic fibrosis transmembrane conductor regulator (CFTR)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   1.3   1.8e-05    0.0013     859    1046 ..     349     542 ..     335     579 .. 0.65
   2 !   92.0   0.0   5.2e-29   3.8e-27    1218    1445 ..     701     933 ..     695     958 .. 0.89

  Alignments for each domain:
  == domain 1    score: 14.1 bits;  conditional E-value: 1.8e-05
   TIGR01271  859 yittnrnlvfvlililvi.flaevaaslvglflisd......lasatnsdkqdsanasspdsskaviitstsayyilyiyvgvadsllalgflrglp..lvhtlltvskrlhkkmlhsvlqapmavlntlkagrilnrfskdiaiiddllpltlfdliqlllivlgaiavvsvlqp.yilvaaipvavifivlrayfl 1046
                  y+    +l +  + ++++ +l+   +s+++lfl +       + +a  +    sa++ +  ++     +  s   ++ +y++ + +l  lg +r l   l+   +tvs  + + +++sv+   +a ++ +++g + +r++ d+  +   +  tl  li   ++++g +a+  v      +va   v  i+ v  ay  
  MMETSP1137-20121227|5665_1  349 YLARGMKLAYPHLALFILaLLCVTVTSILSLFLPNFqgqimdHVIAGRTACTPSATEAE--QNDECHDARQSFMDVVLLYIACSIALGFLGGVRSLCfnLIGRRITVS--VRNTLFRSVIIQDIAFFDGMRTGDLTQRMTSDVRAMVAPVTTTLSTLISNSMLLVGGVAMCFVTSWqLSMVAYTTVLPIMHVTEAYAK 542 
                  55555566664333333303333346778888743322222222222222222222222..22223334567778999999999888888888887522677778887..6789*****************************999999999*******999999988776665431345666666666666666654 PP

  == domain 2    score: 92.0 bits;  conditional E-value: 5.2e-29
   TIGR01271 1218 mtvkdltakytea.gravlqdlsfsveagqrvgllgrtgsgkstllsallrlls.tegeiqidgvswnsvtlqkwrkafgvipqkvfilsgtfrknldpye.qysdeeiwkvaeevglksvieqfpdkldfvlvdggyvlsnghkqlmclarsilskakillldepsafldpvtlqiirktlkqaf..snctvilsehrveallecqqflviegssvkqydsiqkllneasll 1445
                  +t++++t +y     +++l+ ls+ ve+g    l+g++g gkstl+  llr  +  eg i + gv + ++ l    + +gv+ q   ++  t+  n+   +  +++ e+ + ae    +  i  f d     + + g  ls g kq + +ar++l k ++l lde ++ ld  +  +++k+l   +   + tv+l  hr+ ++++   + v++g ++ q  +  +ll+++  +
  MMETSP1137-20121227|5665_1  701 VTIEEVTFRYQMRpQQTILDRLSLHVEPGTVCALVGKSGGGKSTLVHLLLRYYDpQEGRILLGGVDYRTLNLSSVHQRIGVVSQETQLFNATIAENIAYGApAHTEAELLRAAESAQAHQFISSFEDGYATRVGERGQRLSGGQKQRIAVARALLRKPRLLCLDEATSALDAESEALVQKALDALIwtGDHTVVLVAHRLSTVVNAHAIAVVDGGRIAQTGTHAQLLADKHGI 933 
                  67899999998652679**********************************986379***************************************98654278999***************************************************************************986533799*****************************9999999886433 PP

>> TIGR00968  3a0106s01: sulfate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  103.5   0.4   3.5e-32   2.5e-30       3     220 ..     703     928 ..     701     938 .. 0.83

  Alignments for each domain:
  == domain 1    score: 103.5 bits;  conditional E-value: 3.5e-32
   TIGR00968   3 ianvskrfG...dfqalddvdlevktGslvallGpsGsGkstllrviaGlekpdsGrilleGrdvtrvkv..rdreiGfvfqhyalfkhltvrdniafGleirkkdkakikakveellelvqleklgdryp.......sqlsGGqrqrvalaralavepqvllldepfgaldakvrkelrawlrklhdevkvttvfvthdqeealevadrivvlekGkieqvgsaeevyd 220
                 i++v+ r+    + ++ld+++l+v+ G + al+G sG Gkstl+ ++    +p++Grill G d   +++   +++iG v q+  lf+  t+ +nia+G   + + +    a   +  +++    ++d y        ++lsGGq+qr+a+aral  +p++l lde  +alda+    +++ l  l    + t v+v+h  +  ++ a+ i+v++ G+i q g+ +++  
  MMETSP1137-20121227|5665_1 703 IEEVTFRYQmrpQQTILDRLSLHVEPGTVCALVGKSGGGKSTLVHLLLRYYDPQEGRILLGGVDYRTLNLssVHQRIGVVSQETQLFN-ATIAENIAYGAPAHTEAELLRAAESAQAHQFIS--SFEDGYAtrvgergQRLSGGQKQRIAVARALLRKPRLLCLDEATSALDAESEALVQKALDALIWTGDHTVVLVAHRLSTVVN-AHAIAVVDGGRIAQTGTHAQLLA 928
                 5566655542225689************************************************876655116789***********7.69********99887777666666666666553..3444433111122167*************************************9*********************9998776.899**************998765 PP

>> TIGR03265  PhnT2: putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.7   0.2   6.9e-32     5e-30       7     224 ..     703     928 ..     698     949 .. 0.84

  Alignments for each domain:
  == domain 1    score: 102.7 bits;  conditional E-value: 6.9e-32
   TIGR03265   7 ieeiekefe...aftalkdislsvkkgelvclLGPsGCGkttLLriiaGLekqdaGaillggrdit..rlppqkrdyGivfqsYaLfPnltvaeniayGLknkklk...reevaerveelLelv..glsgseekyPgqlsGGqqqrvaLaralalsPglLLLDePlsaLDakvrekLreelkklqrklgvttimvthdqeealslaDrivvmnkgkieqvgtPeeiYe 224
                 iee++ +++   + t+l+ +sl+v+ g + +l+G sG Gk+tL+ ++    ++++G+illgg d    +l++ ++  G+v q   Lf n t+aeniayG  ++      r+  +++ +++++    g  +       +lsGGq+qr+a+aral  +P lL LDe  saLDa   + +++ l +l    + t ++v+h     ++ a  i+v++ g+i q+gt +++  
  MMETSP1137-20121227|5665_1 703 IEEVTFRYQmrpQQTILDRLSLHVEPGTVCALVGKSGGGKSTLVHLLLRYYDPQEGRILLGGVDYRtlNLSSVHQRIGVVSQETQLF-NATIAENIAYGAPAHTEAellRAAESAQAHQFISSFedGYATRVGERGQRLSGGQKQRIAVARALLRKPRLLCLDEATSALDAESEALVQKALDALIWTGDHTVVLVAHRLS-TVVNAHAIAVVDGGRIAQTGTHAQLLA 928
                 6666666655557899**********************************************98652267888999***********.89*********876654311145555555555555422455555566778***********************************************************876.56779****************988765 PP

>> TIGR01186  proV: glycine betaine/L-proline transport ATP binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.6   0.0     7e-32     5e-30      10     220 ..     720     929 ..     715     949 .. 0.89

  Alignments for each domain:
  == domain 1    score: 102.6 bits;  conditional E-value: 7e-32
   TIGR01186  10 ndvdleieeGeiiviiGlsGsGkstlvrllnrliePtaGkilidGediaeisdaelrevrrkkiamviqkialfPhmtildnislglellkideqerkekalealklvdl..eeyedryP...delsGGmqqrvGlaralaaePdlllmdeafsaldPlirdelqdelvklqkklqktivfithdldealrlgdrivilkaGeivqvGtPdeilrn 220
                 + ++l++e G +  ++G sG Gkstlv+ll r  +P +G+il+ G+d   ++   +     ++i++v q+  lf   ti +ni++g      +e  r   + +a + +    ++y+ r     ++lsGG++qr+ +aral  +P ll +dea sald      +q+ l  l  + ++t+v+++h l   +  +  i+++  G i q Gt  ++l +
  MMETSP1137-20121227|5665_1 720 DRLSLHVEPGTVCALVGKSGGGKSTLVHLLLRYYDPQEGRILLGGVDYRTLNLSSV----HQRIGVVSQETQLFN-ATIAENIAYGAPAHTEAELLRAAESAQAHQFISSfeDGYATRVGergQRLSGGQKQRIAVARALLRKPRLLCLDEATSALDAESEALVQKALDALIWTGDHTVVLVAHRLSTVVN-AHAIAVVDGGRIAQTGTHAQLLAD 929
                 56799*****************************************9988877666....789**********95.7*********999888888888777777777765456787765422268*************************************************************98776.899**************9999876 PP

>> TIGR01187  potA: polyamine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.3   0.2   7.8e-32   5.6e-30       1     193 [.     734     931 ..     734     943 .. 0.87

  Alignments for each domain:
  == domain 1    score: 102.3 bits;  conditional E-value: 7.8e-32
   TIGR01187   1 lLGpsGsGkttlLrllaGleeldsGkilldgedvt..evpaekrsvnvvfqsyaLfPhmtveenvafgLkmrkvpkaeikervkeaLelvq.l.eefakr...kpsqlsGGqrqrvalaravvkkPkiLLlDeplsaLDkkLrdqmqlelkalqeklGitvvlvthDqeealtmsdriavlrkGkiaqigepeeiyeePa 193
                 l+G sG Gk+tl+ ll  + ++++G+ill+g+d    + ++ ++ ++vv q+  Lf   t++en+a+g   + + +  +++   +a + +  + +++a+r   + ++lsGGq+qr+a+ara+  kP++L lDe+ saLD +    +q+ l al      tvvlv+h  +  +  +  iav+  G+iaq g+  ++ ++ +
  MMETSP1137-20121227|5665_1 734 LVGKSGGGKSTLVHLLLRYYDPQEGRILLGGVDYRtlNLSSVHQRIGVVSQETQLFN-ATIAENIAYGAPAHTEAELLRAAESAQAHQFISsFeDGYATRvgeRGQRLSGGQKQRIAVARALLRKPRLLCLDEATSALDAESEALVQKALDALIWTGDHTVVLVAHRLST-VVNAHAIAVVDGGRIAQTGTHAQLLADKH 931
                 68******************************9751266788899***********6.7**********99999888888888888777752313455553336789***********************************************************8775.66799**************9998877655 PP

>> TIGR02142  modC_ABC: molybdate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.0   0.6   1.2e-31   8.5e-30      16     224 ..     722     931 ..     706     956 .. 0.84

  Alignments for each domain:
  == domain 1    score: 102.0 bits;  conditional E-value: 1.2e-31
   TIGR02142  16 vdlelpgkgvtalFGrsGsGktslirliaGLtrpdegeivldgevlqdsrkkiilppekRrvgyvFqeArLFpHlsvrenLrYGlkraraee..rriseekvielL.....giehLleRlpgkLsGGekqRvaigRAlLssPeLLlmDePLaaLDekrkkeilPyLerlsaelkiPilyvsHsldevarladrvvvledGrvkaagkleevlaskd 224
                 ++l+++   v+al G+sG Gk++l++l+     p+eg+i l g  +    + + l+  + r+g+v qe +LF   +++en+ YG    + +e  r ++ ++  +++     g    +  + ++LsGG kqR+a++RAlL +P+LL +De  +aLD ++ + +   L+ l    +  +++v+H l+ v   a  + v++ Gr++ +g+ +++la+k+
  MMETSP1137-20121227|5665_1 722 LSLHVEPGTVCALVGKSGGGKSTLVHLLLRYYDPQEGRILLGGVDY----RTLNLSSVHQRIGVVSQETQLFN-ATIAENIAYGAPAHTEAEllRAAESAQAHQFIssfedGYATRVGERGQRLSGGQKQRIAVARALLRKPRLLCLDEATSALDAESEALVQKALDALIWTGDHTVVLVAHRLSTVVN-AHAIAVVDGGRIAQTGTHAQLLADKH 931
                 567777779*********************************9865....45889999999***********7.69********976554432244445555555422223445567778899***************************************************************987.899******************99874 PP

>> TIGR03410  urea_trans_UrtE: urea ABC transporter, ATP-binding protein UrtE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  101.5   0.1   1.4e-31   9.8e-30       3     220 ..     703     927 ..     701     937 .. 0.84

  Alignments for each domain:
  == domain 1    score: 101.5 bits;  conditional E-value: 1.4e-31
   TIGR03410   3 venlevaYg...esevlrdvslevekgevvavlGrngvGkttllkalvgllkvksGeielegeditklkpeervkaGiayvpqGreifpkltveenlelglealkkk...ekkipeeiyelFPvlke....mlkRrgGdLsGGqqqqlaiaRaLvtePklllLDePteGiqPsiikeiekvikelakekdlaillveqvldfaleladrylvlerGevvaegekeeld 220
                 +e+++  Y+   + ++l  +sl+ve g v a++G+ g Gk+tl++ l+  ++ ++G+i l g d ++l+  + v++ i+ v+q  ++f + t++en+  g+ a++++   + +  ++++++    ++        rg  LsGGq+q +a+aRaL+ +P+ll LDe t  +     + ++k++++l  ++d +++lv + l+ +++ a+ ++v++ G++ ++g++++l 
  MMETSP1137-20121227|5665_1 703 IEEVTFRYQmrpQQTILDRLSLHVEPGTVCALVGKSGGGKSTLVHLLLRYYDPQEGRILLGGVDYRTLNL-SSVHQRIGVVSQETQLFNA-TIAENIAYGAPAHTEAellRAAESAQAHQFISSFEDgyatRVGERGQRLSGGQKQRIAVARALLRKPRLLCLDEATSALDAESEALVQKALDALIWTGDHTVVLVAHRLSTVVN-AHAIAVVDGGRIAQTGTHAQLL 927
                 556666665333689*************************************************998875.679999**********975.9*********99988755422222333333333333100033457789**************************************************************9998.9***************999864 PP

>> TIGR01188  drrA: daunorubicin resistance ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.2   0.0   7.9e-31   5.7e-29       9     221 ..     719     934 ..     713     958 .. 0.85

  Alignments for each domain:
  == domain 1    score: 99.2 bits;  conditional E-value: 7.9e-31
   TIGR01188   9 vdgvnlkveegevfglLGPnGAGKtttikmLttllkPdsGtarvaGyDv.vrepdevRrsigvvpqkasvdedLtarenlellgely...glpkkeaeeraeellelvelkeaad..kkvktysgGmrrrlelaasliaqPevlfLDEPtiGLDprtrraiwdlieelkke.gvtilltthyleeadkladrvaiidkGkiiaedtpeeLKervgkevve 221
                 +d ++l+ve g+v +l+G  G GK+t++++L     P++G+  + G D  + + ++v ++igvv q++++ ++ t  en+   +  +   +l ++++ ++a++ +  +e  +a++  ++ + +sgG+++r+ +a++l+ +P++l LDE t+ LD+++ + + + +++l  + ++t++l +h l  +   a  +a++d G+i+ ++t  +L +  +k+ ++
  MMETSP1137-20121227|5665_1 719 LDRLSLHVEPGTVCALVGKSGGGKSTLVHLLLRYYDPQEGRILLGGVDYrTLNLSSVHQRIGVVSQETQLFNA-TIAENIAYGAPAHteaELLRAAESAQAHQFISSFEDGYATRvgERGQRLSGGQKQRIAVARALLRKPRLLCLDEATSALDAESEALVQKALDALIWTgDHTVVLVAHRLSTVV-NAHAIAVVDGGRIAQTGTHAQLLA--DKHGIY 934
                 799*********************************************8456889**************9987.77789988776542226778889999*********9998763367889**********************************************99989**********9986.5899**************999963..333333 PP

>> TIGR02315  ABC_phnC: phosphonate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.6   0.1   1.1e-30   7.8e-29       4     211 ..     703     905 ..     700     933 .. 0.82

  Alignments for each domain:
  == domain 1    score: 98.6 bits;  conditional E-value: 1.1e-30
   TIGR02315   4 venlskvypn..gkqalknvnleikkGelvaviGlsGaGkstllrsinrlveissgsillegkevtklkkkelrklrkkigmifqeynlierltvlenvLsgrlgakstlksllglfseedkekAlelLervglaelaakradqLsGGqqqRvaiaRalaqqpklilaDEPiasLDpksskqvmdllkrinkekgitvivnlHqvdlakk 211
                 +e+++ +y+   ++++l+ ++l++++G + a++G+sG Gkstl++ + r  ++++g+ill g + +     +l +++++ig+++qe +l +  t+ en+  g+ + ++  ++ll+  ++++ ++ +++ e  g a    +r ++LsGGq+qR+a+aRal+++p+l+  DE +++LD +s   v ++l  +    + tv++  H+++ + +
  MMETSP1137-20121227|5665_1 703 IEEVTFRYQMrpQQTILDRLSLHVEPGTVCALVGKSGGGKSTLVHLLLRYYDPQEGRILLGGVDYR---TLNLSSVHQRIGVVSQETQLFN-ATIAENIAYGAPAHTE--AELLRAAESAQAHQFISSFED-GYATRVGERGQRLSGGQKQRIAVARALLRKPRLLCLDEATSALDAESEALVQKALDALIWTGDHTVVLVAHRLSTVVN 905
                 5666666654227889**********************************************9876...6679999***********9985.6899***999876654..345555555555555555543.7899999****************************************************************9987654 PP

>> TIGR02982  heterocyst_DevA: ABC exporter ATP-binding subunit, DevA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.8   0.2     2e-30   1.4e-28       3     219 ..     702     917 ..     700     918 .. 0.85

  Alignments for each domain:
  == domain 1    score: 97.8 bits;  conditional E-value: 2e-30
   TIGR02982   3 kirelnhyygkgelrkqvlfdinleiepgeiviltGpsGsGkttlltligglrsvqeGelkvlgkelkgasekelvqvrrkiGyifqahnllesltaeqnvrmalelkek..lsakeakakaeelleav..gleerldykpedlsgGqkqrvaiaralvarPklvladePtaaldkksgrevvellqklareqgttillvthdnrildvadrivkmedGkl 219
                 +i+e+   y+  + ++ +l  ++l++epg +  l G+sG Gk tl+ l+      qeG + + g + + +   +l  v ++iG++ q+  l+++ t  +n+  ++  +++  l +++++a+a++++++   g   r+  + + lsgGqkqr+a+aral  +P+l+  de t+ald++s   v + l  l      t++lv+h    +  a  i  ++ G++
  MMETSP1137-20121227|5665_1 702 TIEEVTFRYQM-RPQQTILDRLSLHVEPGTVCALVGKSGGGKSTLVHLLLRYYDPQEGRILLGGVDYRTL---NLSSVHQRIGVVSQETQLFNA-TIAENIAYGAPAHTEaeLLRAAESAQAHQFISSFedGYATRVGERGQRLSGGQKQRIAVARALLRKPRLLCLDEATSALDAESEALVQKALDALIWTGDHTVVLVAHRLSTVVNAHAIAVVDGGRI 917
                 66777777765.456789******************************************9999887655...688999*************97.7778999988766652266777788888888876335667*******************************************************************8766666667766666665 PP

>> TIGR01277  thiQ: thiamine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.3   0.0   2.8e-30     2e-28       4     211 ..     704     921 ..     701     923 .. 0.82

  Alignments for each domain:
  == domain 1    score: 97.3 bits;  conditional E-value: 2.8e-30
   TIGR01277   4 ddviyeykhlpl.....efdlsveaGervailGesGaGkstllnliaGflepasGeikvndkdhtr..sapyerpvsmlfqennlfahltvrqniglGlkpglk...lnavqkekvedvarqv..GiadylerlpeelsGGqrqrvalarclvrekpillldepfsaldpklreemlalvkkladekkltlllvthslsdaaaiasqvvvvedGkikvls 211
                 ++v+++y+  p      +++l ve G   a++G+sG Gkstl+ l+  +  p +G i + ++d+ +  ++  ++ + ++ qe  lf+  t+++ni+ G         l a +  + ++   +   G a  +    ++lsGGq+qr+a+ar l+r+  +l lde  sald      +   +  l    + t++lv+h+ls +++ a+ ++vv+ G+i++ +
  MMETSP1137-20121227|5665_1 704 EEVTFRYQMRPQqtildRLSLHVEPGTVCALVGKSGGGKSTLVHLLLRYYDPQEGRILLGGVDYRTlnLSSVHQRIGVVSQETQLFN-ATIAENIAYGAPAHTEaelLRAAESAQAHQFISSFedGYATRVGERGQRLSGGQKQRIAVARALLRKPRLLCLDEATSALDAESEALVQKALDALIWTGDHTVVLVAHRLSTVVN-AHAIAVVDGGRIAQTG 921
                 56666666555311222689****************************************999765115677899***********7.69********754332222789999999998877623555555556678********************************987777777778888899************8875.789*********9875 PP

>> TIGR01166  cbiO: cobalt ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.1   0.1     1e-29   7.4e-28       5     185 ..     716     898 ..     711     903 .. 0.86

  Alignments for each domain:
  == domain 1    score: 95.1 bits;  conditional E-value: 1e-29
   TIGR01166   5 aevlkglnlavergevlallGanGaGkstlllhlnGllrPksGkvlldGeeldysrkgllelrkkvalvlqdpddqlfaadvdedvafgplnlGlseaeverrvrealaavdis....gleerp...thllsgGekkrvaiagavalrpdvllldePtagldpaGaeqlleilrklreeGk.tvvisth 185
                   +l+ l+l+ve g+v al+G+ G Gkstl++ l     P++G++ll+G  +dy   +l ++ +++++v q+   qlf a++ e++a+g      +eae+ r  + a a   is    g++ r     + lsgG+k+r+a+a a+  +p++l lde t+ ld++ +  + ++l+ l   G  tvv+ +h
  MMETSP1137-20121227|5665_1 716 QTILDRLSLHVEPGTVCALVGKSGGGKSTLVHLLLRYYDPQEGRILLGG--VDYRTLNLSSVHQRIGVVSQE--TQLFNATIAENIAYGAPA--HTEAELLRAAESAQAHQFISsfedGYATRVgerGQRLSGGQKQRIAVARALLRKPRLLCLDEATSALDAESEALVQKALDALIWTGDhTVVLVAH 898
                 569*********************************************9..89****************996..6**************875..678888877777766666651111455554222578**********************************************9999626777787 PP

>> TIGR02314  ABC_MetN: D-methionine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.5   0.1     9e-30   6.5e-28      13     233 ..     711     931 ..     701     956 .. 0.81

  Alignments for each domain:
  == domain 1    score: 95.5 bits;  conditional E-value: 9e-30
   TIGR02314  13 qgdkkikaldnvslfvpkgqifgvigasgagkstlircvnllekptsgavivdgkdlttlsnaelvkarrqigmifqhfnllssrtvfgnval..plelentp.kekikrkvtellalv..glsdkkdsypsnlsggqkqrvaiaralasepkvllcdeatsaldpattqsilellkeinrrlgltillithemdvvkricdevavidkgeliekgtvseifshpk 233
                 q   + + ld +sl+v  g+++ ++g sg gkstl+  +     p +g +++ g+d  tl+   l    ++ig++ q  +l+   t+ +n+a   p   e++  +     +  ++++    g + +       lsggqkqr+a+aral  +p++l  deatsald  +   + + l  +  + + t++l++h +  v +  + +av+d+g++ + gt ++++++ +
  MMETSP1137-20121227|5665_1 711 QMRPQQTILDRLSLHVEPGTVCALVGKSGGGKSTLVHLLLRYYDPQEGRILLGGVDYRTLN---LSSVHQRIGVVSQETQLFN-ATIAENIAYgaPAHTEAELlRAAESAQAHQFISSFedGYATRVGERGQRLSGGQKQRIAVARALLRKPRLLCLDEATSALDAESEALVQKALDALIWTGDHTVVLVAHRLSTVVN-AHAIAVVDGGRIAQTGTHAQLLADKH 931
                 444566889******************************999****************996...5556678*******99886.699*****82243333332122222334444443223677777777889*********************************99999999********************99876.799**************999998765 PP

>> TIGR03873  F420-0_ABC_ATP: proposed F420-0 ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.4   2.8   1.9e-29   1.4e-27      12     227 ..     714     929 ..     700     945 .. 0.83

  Alignments for each domain:
  == domain 1    score: 94.4 bits;  conditional E-value: 1.9e-29
   TIGR03873  12 ggrlivddvdvtaPaGaltgllGPnGsGkstllrllaGllapdaGevdlagadlkalsrrararrvalveqdsdaevplsvrdvvalGriPhrslfaadsdedaevvdralarve...lssladrdlstlsGGerqrvhlaralaqePklllldePtnhldvsaqlellalvrela.aegvtvvvalhdlnlaasvcdhvvvldgGrvvaaGppaevltp 227
                  +++i+d + + + +G++ +l+G  G Gkstl++ll     p++G++ l+g+d ++l+  +  +r+ +v q+++   + ++ + +a G   h  +    + ++++ +++ +++ e   ++ + +r  + lsGG++qr+ +aral ++P+ll lde t  ld ++   + +++  l+ +   tvv+  h l+  +  +  + v+dgGr++ +G+ a++l+ 
  MMETSP1137-20121227|5665_1 714 PQQTILDRLSLHVEPGTVCALVGKSGGGKSTLVHLLLRYYDPQEGRILLGGVDYRTLNLSSVHQRIGVVSQETQ-LFNATIAENIAYGAPAHTEAELLRA-AESAQAHQFISSFEdgyATRVGERG-QRLSGGQKQRIAVARALLRKPRLLCLDEATSALDAESEALVQKALDALIwTGDHTVVLVAHRLSTVV-NAHAIAVVDGGRIAQTGTHAQLLAD 929
                 3568*******************************************************************986.57999********988876544444.4445555666555411145555554.68***********************************999999999999444578888889999765.5788999***********9998875 PP

>> TIGR03608  L_ocin_972_ABC: putative bacteriocin export ABC transporter, lactococcin 972 group
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   93.6   0.0   3.3e-29   2.4e-27      10     201 ..     715     907 ..     703     912 .. 0.81

  Alignments for each domain:
  == domain 1    score: 93.6 bits;  conditional E-value: 3.3e-29
   TIGR03608  10 dkeilkklslkiekGelvaivGesGsGKstlLnilgllekkdsgkvilegkekaklkskkaskllreklgylFqnfaLlenetveenlelalklkkkskk...ekekkkkevlekv..glekklkkkiyelsgGekqRvalarillkeselilADEPtgsLDkknreevlellkelkeeg.ktiiivtHdpevaekad 201
                 +++il+ lsl++e G + a+vG+sG GKstl+ +l +  ++++g+++l g ++++l+     + +++++g + q+ +L  n t+ en+  +   + + +     ++ +  + + ++  g  ++  ++   lsgG+kqR+a+ar+ll++++l+  DE t++LD+++++ v + l+ l  +g +t+++v H  +   +a+
  MMETSP1137-20121227|5665_1 715 QQTILDRLSLHVEPGTVCALVGKSGGGKSTLVHLLLRYYDPQEGRILLGGVDYRTLNL----SSVHQRIGVVSQETQLF-NATIAENIAYGAPAHTEAELlraAESAQAHQFISSFedGYATRVGERGQRLSGGQKQRIAVARALLRKPRLLCLDEATSALDAESEALVQKALDALIWTGdHTVVLVAHRLSTVVNAH 907
                 459*************************************************776655....456789*********99.579******99877766654111344444555555522346667778899*********************************************98665379******877665555 PP

>> TIGR02211  LolD_lipo_ex: lipoprotein releasing system, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.1   0.0   2.1e-28   1.5e-26       5     215 ..     704     913 ..     701     919 .. 0.84

  Alignments for each domain:
  == domain 1    score: 91.1 bits;  conditional E-value: 2.1e-28
   TIGR02211   5 enltksykegkleievlkgvsleiekgelvaivGssGsGkstllhllggldkptsGevllkGkelsklssneraklrnkklGfiyqfhhlladftalenvam..Plliskkskkea.kerakellekv..glekrinkkpselsGGerqrvaiaralvnkPklvladePtgnldkktakkifelllelnkekntallvvthdlelakkldrvlelk 215
                 e++t +y+    + ++l+ +sl++e g + a+vG+sG Gkstl+hll    +p +G++ll G + ++l+ ++      +++G + q   l+ + t+ en+a   P+    +  + a   +a+++++ +  g   r+ ++   lsGG++qr+a+aral+ kP+l+  de t+ ld+++   + + l  l  + + ++++v+h l+ + +++    + 
  MMETSP1137-20121227|5665_1 704 EEVTFRYQMRP-QQTILDRLSLHVEPGTVCALVGKSGGGKSTLVHLLLRYYDPQEGRILLGGVDYRTLNLSSV----HQRIGVVSQETQLF-NATIAENIAYgaPAHTEAELLRAAeSAQAHQFISSFedGYATRVGERGQRLSGGQKQRIAVARALLRKPRLLCLDEATSALDAESEALVQKALDALIWTGDHTVVLVAHRLSTVVNAHAIAVVD 913
                 56677777655.5679***************************************************987765....468******88876.679*****9733555554444433145678899988335789*******************************************************************988776666655555 PP

>> TIGR03005  ectoine_ehuA: ectoine/hydroxyectoine ABC transporter, ATP-binding protein EhuA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.1   0.1   3.8e-28   2.7e-26       2     235 ..     702     927 ..     701     932 .. 0.87

  Alignments for each domain:
  == domain 1    score: 90.1 bits;  conditional E-value: 3.8e-28
   TIGR03005   2 risdvtkrfg...eltvldglelevaaGekvaliGpsGsGkstilrilmtletideGsikvegeqlyhmkgrkGklvpadekhlrkvrekiGmvfqsfnlfphktvldnvt.eapvlvkG.varaeaekravelldmv..GladkadalpaqlsGGqkqrvaiaralalrpkvllfdevtsaldpelveevlnvlrrlasetdltmllvthemgfarefadrvlffdkGkiveeGkpdeif 235
                  i++vt r++   + t+ld l+l+v++G   al+G sG Gkst++ +l+     +eG+i + g   y                l  v ++iG+v q+ +lf   t+ +n++  ap ++   + ra+  ++a +++     G a +  +   +lsGGqkqr+a+aral  +p++l +de+tsald e    v + l  l    d t++lv+h++    + a  +   d G+i++ G   +++
  MMETSP1137-20121227|5665_1 702 TIEEVTFRYQmrpQQTILDRLSLHVEPGTVCALVGKSGGGKSTLVHLLLRYYDPQEGRILLGG-VDYRTL------------NLSSVHQRIGVVSQETQLFNA-TIAENIAyGAPAHTEAeLLRAAESAQAHQFISSFedGYATRVGERGQRLSGGQKQRIAVARALLRKPRLLCLDEATSALDAESEALVQKALDALIWTGDHTVVLVAHRLSTVVN-AHAIAVVDGGRIAQTGTHAQLL 927
                 5667777776333579*********************************************44.444333............578999*************75.6778886269***9753889999999***99975559*********************************************9999999*******************998766.7789999*******99988876 PP

>> TIGR00960  3a0501s02: type II secretory pathway family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.5   0.1   7.7e-28   5.6e-26       2     201 ..     701     903 ..     700     916 .. 0.80

  Alignments for each domain:
  == domain 1    score: 89.5 bits;  conditional E-value: 7.7e-28
   TIGR00960   2 ikfeqvskaykga.aelaldnvtvkiekGelvflvGhsGaGkstllklilgiekpsaGkirvsgqdltklrdrevpflrrqiGivfqdfkllsdrtvydnvalalriiG..vkgreie.ervsaale..kvGlkdkakalPvqlsgGeqqrvaiaravvnkPallladePtgnlddelsrdilelleevnraG.ttvlvathdenlv 201
                 +++e+v+ +y+   ++  ld +++++e G +  lvG+sG Gkstl++l+l    p++G+i++ g d  +l   +++ + ++iG+v q+ +l+ + t+ +n+a            r++e  ++++ +   + G   +  +  ++lsgG++qr+a+ara+++kP ll  de t+ ld e    + + l+ +  +G  tv++ +h  + v
  MMETSP1137-20121227|5665_1 701 VTIEEVTFRYQMRpQQTILDRLSLHVEPGTVCALVGKSGGGKSTLVHLLLRYYDPQEGRILLGGVDYRTL---NLSSVHQRIGVVSQETQLF-NATIAENIAYGAPAHTeaELLRAAEsAQAHQFISsfEDGYATRVGERGQRLSGGQKQRIAVARALLRKPRLLCLDEATSALDAESEALVQKALDALIWTGdHTVVLVAHRLSTV 903
                 578999999987526678**********************************************996655...677889*********9976.6799****98643322002222222022333333115699**********************************************99*******9999855888888875444 PP

>> TIGR00955  3a01204: pigment precursor permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.2   0.0   1.1e-26   8.3e-25      28     254 ..     707     926 ..     688     932 .. 0.84

  Alignments for each domain:
  == domain 1    score: 85.2 bits;  conditional E-value: 1.1e-26
   TIGR00955  28 eealarkkpekellknvsGvaksGellAvlGsSGaGKtTLlnalafrsekglkvsgdvllnG...ekveakemraisayvqqddlfiptltvrehLmfsahlrlkrrltkkekrerveevleelgLrkcadtrigvpgrvkglSgGerkRlalaselltdPilLfcDEPTsGLDsfsaasvvkvLkklaqkg.ktviltiHQPsselfelfdkiillaeGrvvylGspeea 254
                 +    + +p++++l + s ++++G++ A++G SG GK+TL+  l  +   +    g +ll G   + ++ + ++++ + v q+  ++   t+ e++ + a    +++l +    ++ ++ +++   ++   tr+g  g+   lSgG+++R+a+a  ll +P lL +DE Ts LD+ s a v k+L  l   g +tv+l+ H  s  +  + + i +++ Gr++ +G+  ++
  MMETSP1137-20121227|5665_1 707 TFR-YQMRPQQTILDRLSLHVEPGTVCALVGKSGGGKSTLVHLLLRYYDPQE---GRILLGGvdyRTLNLSSVHQRIGVVSQETQLF-NATIAENIAYGAPAHTEAELLRAAESAQAHQFISS--FEDGYATRVGERGQ--RLSGGQKQRIAVARALLRKPRLLCLDEATSALDAESEALVQKALDALIWTGdHTVVLVAHRLSTVV--NAHAIAVVDGGRIAQTGTHAQL 926
                 332.35569*********************************9988876543...45788882225678899999999998876555.56999******************99999*****86..679999****8776..9*********************************************99877368999999988766..4589*************99886 PP

>> TIGR02770  nickel_nikD: nickel import ATP-binding protein NikD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.5   0.1   1.2e-23   8.6e-22       3     216 ..     720     929 ..     718     942 .. 0.83

  Alignments for each domain:
  == domain 1    score: 75.5 bits;  conditional E-value: 1.2e-23
   TIGR02770   3 qdvnlslkrgkvlalvGesGsGksltalailglldkeltktsGeilldgkelaalalrg..reialilqnPrsafnPlltikeqlletlkalekls..kqakelivealeavgLeeaeevlkkypfelsGGmlqRvmialallleaplliaDePttdlDvvvqaevLklleelrekrglgillithDlgvvaeladevavmekGkivergtvkelfqe 216
                 + ++l++  g v+alvG+sG Gks+    +l   d+     +G+ill g ++ +l+l +  ++i+++ q+  + fn   ti+e++     a+++ +  + a++  ++++  +  +  ++ + +   +lsGG  qR+ +a all ++ ll  De t++lD+ ++a v k l+ l  + + +++l++h l+ v + a+ +av++ G+i  +gt  +l+ +
  MMETSP1137-20121227|5665_1 720 DRLSLHVEPGTVCALVGKSGGGKSTLVHLLLRYYDP----QEGRILLGGVDYRTLNLSSvhQRIGVVSQE-TQLFN--ATIAENIAYGAPAHTEAEllRAAESAQAHQFISSFEDGYATRVGERGQRLSGGQKQRIAVARALLRKPRLLCLDEATSALDAESEALVQKALDALIWTGDHTVVLVAHRLSTVVN-AHAIAVVDGGRIAQTGTHAQLLAD 929
                 6799********************999999998885....68*********9999665511567777776.67899..58888888888887777764556655666666555555677788899****************************************************************9986.9*************9999998764 PP

>> TIGR01184  ntrCD: nitrate ABC transporter, ATP-binding proteins C and D
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.4   0.0   4.9e-22   3.5e-20       1     195 [.     719     919 ..     719     930 .. 0.79

  Alignments for each domain:
  == domain 1    score: 70.4 bits;  conditional E-value: 4.9e-22
   TIGR01184   1 lkdvdleikkgefislighsgcgkstllnliaglekptsgavilegkeite....pgpdrmvvfqnysllpwltvrenialav.davlrdlskserreiveehielv..glreaadkrpeqlsggmkqrvaiaralsirpklllldepfgaldaltreelqekllkiveearvtvlmvthdvdealllsdrvvmltngpaak 195
                 l+ ++l+++ g   +l+g+sg gkstl+ l+  +  p +g + l g +          +r+ v  + + l   t+ enia     +  ++l ++ + +  ++ i+    g  +    r ++lsgg kqr+a+aral  +p+ll lde   alda +   +q+ l  ++   + tv++v+h +   ++ +  + ++  g  a+
  MMETSP1137-20121227|5665_1 719 LDRLSLHVEPGTVCALVGKSGGGKSTLVHLLLRYYDPQEGRILLGGVDYRTlnlsSVHQRIGVVSQETQLFNATIAENIAYGApAHTEAELLRAAESAQAHQFISSFedGYATRVGERGQRLSGGQKQRIAVARALLRKPRLLCLDEATSALDAESEALVQKALDALIWTGDHTVVLVAHRLST-VVNAHAIAVVDGGRIAQ 919
                 57789***************************************99765431111456788666666666678999***98551556667777777777777777661244445568999********************************************999999999*******9864.44555566555555555 PP

>> TIGR01189  ccmA: heme ABC exporter, ATP-binding protein CcmA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.7   0.4   3.1e-21   2.2e-19       9     187 ..     712     900 ..     704     911 .. 0.83

  Alignments for each domain:
  == domain 1    score: 67.7 bits;  conditional E-value: 3.1e-21
   TIGR01189   9 eRgervlleglsfelaaGealvveGpnGiGKttLLRilaGLlkpesGevelndkelaeqr.delaeellylgHldglKaeLsalEnLkfyaallqseqk..tveealekvgLsgledlpv.......aqLsAGqkrRlalarLllskaplWiLDEPttalDkegvellaellaaHlargGi.vllathqd 187
                  R ++++l +ls+++ +G + +++G+ G GK+tL+ +l     p++G++ l + +  + + +++++++  ++ +  l +  +++En+ + a  ++++++  ++e a ++  +s +ed  +       + Ls Gqk+R+a+ar ll k +l  LDE t alD+e+ +l++++l+a + +g   v+l +h  
  MMETSP1137-20121227|5665_1 712 MRPQQTILDRLSLHVEPGTVCALVGKSGGGKSTLVHLLLRYYDPQEGRILLGGVDYRTLNlSSVHQRIGVVSQETQLFN-ATIAENIAYGAPAHTEAELlrAAESAQAHQFISSFEDGYAtrvgergQRLSGGQKQRIAVARALLRKPRLLCLDEATSALDAESEALVQKALDALIWTGDHtVVLVAHRL 900
                 58899***********************************************999888662567888888888888876.599**********998887656667777777788887655222233367*********************************************9999976155556654 PP

>> TIGR03719  ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.0   0.0     1e-08   7.2e-07     321     406 ..     699     791 ..     682     825 .. 0.83
   2 !   39.0   0.0   1.1e-12   7.9e-11     160     251 ..     838     931 ..     799     952 .. 0.78

  Alignments for each domain:
  == domain 1    score: 26.0 bits;  conditional E-value: 1e-08
   TIGR03719 321 kvievenlskafg...dklliddlsfklpkggivGviGpnGaGkstlfklitgkekpdsGelkiG....etvklayvdqsrdalddnktvwee 406
                   + +e+++ +++   +++++d+ls+++ +g++  ++G  G Gkstl++l+    +p++G++ +G     t++l+ v q    + ++ +++++
  MMETSP1137-20121227|5665_1 699 WSVTIEEVTFRYQmrpQQTILDRLSLHVEPGTVCALVGKSGGGKSTLVHLLLRYYDPQEGRILLGgvdyRTLNLSSVHQRIGVVSQETQLFNA 791
                 55677777777762235689********************************************955555999*****999988888877764 PP

  == domain 2    score: 39.0 bits;  conditional E-value: 1.1e-12
   TIGR03719 160 eklsGGekrrvalcrlllekPdlllldePtnhldaesvaWlekflke..ykG..tvvavthdryfldnvaeWileldrGegipykgnysswleqke 251
                 ++lsGG+k+r+a++r ll kP ll lde t  ldaes a ++k l    ++G  tvv+v+h    + n a+ i  +d G+ i+  g +++ l +k+
  MMETSP1137-20121227|5665_1 838 QRLSGGQKQRIAVARALLRKPRLLCLDEATSALDAESEALVQKALDAliWTGdhTVVLVAHRLSTVVN-AHAIAVVDGGR-IAQTGTHAQLLADKH 931
                 68*****************************************9987334555589999996555544.45566677665.556777777777665 PP

>> TIGR03411  urea_trans_UrtD: urea ABC transporter, ATP-binding protein UrtD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.8   0.0   1.4e-20   9.9e-19      17     234 ..     718     931 ..     701     937 .. 0.86

  Alignments for each domain:
  == domain 1    score: 65.8 bits;  conditional E-value: 1.4e-20
   TIGR03411  17 alndlslsveegelrviiGpnGaGkttllDvitGktrpdeGsvlfkgkdltklkeaeiarlGigRkfqkpsvfeeltvlenlelalkadksvlallfarlskeekerieevleligLeekadkkaglLshGqkqwLeigmllvqepkllllDePvaGmtdeetektaellkel..akersvvvvehDmefvrelaekvtvlheGkvlaeGsldevqadek 234
                  l++lsl+ve+g + +++G  G Gk+tl+ ++     p+eG++l+ g d + l+ +++ ++ ig   q++++f+  t++en+   + a+ +  +ll+a  s+++++ i++     g ++++ ++ + Ls Gqkq++ ++  l+++p+ll lDe ++ + +e ++ + + l +l  +++++vv+v h ++ v + a+ ++v+  G++   G+ +++ ad++
  MMETSP1137-20121227|5665_1 718 ILDRLSLHVEPGTVCALVGKSGGGKSTLVHLLLRYYDPQEGRILLGGVDYRTLNLSSV-HQRIGVVSQETQLFN-ATIAENIAYGAPAHTE-AELLRAAESAQAHQFISSFE--DGYATRVGERGQRLSGGQKQRIAVARALLRKPRLLCLDEATSALDAESEALVQKALDALiwTGDHTVVLVAHRLSTVVN-AHAIAVVDGGRIAQTGTHAQLLADKH 931
                 5899*********************************************999887765.55699999*****96.69****9887776654.45565555555555555543..37889999*************************************9999999999999844689***********9987.678**************999998876 PP

>> TIGR01288  nodI: nodulation ABC transporter NodI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.1   0.1   1.5e-20   1.1e-18      16     226 ..     715     930 ..     700     945 .. 0.79

  Alignments for each domain:
  == domain 1    score: 65.1 bits;  conditional E-value: 1.5e-20
   TIGR01288  16 dkvvvndlsftiaagecfgllgpngagkstiarlvlglispdegkitvlgepvpa.rarlarakigvvpqfdnldreftvrenllvfgryfglstreieevips.llef.arleskadvrv....adlsggmkrrltlaralindpqllildepttgldpharhliwerlrsllarg.ktilltthlmeeaerlcdrlcvleagrkiaegrpdalideq 226
                 ++ +++ ls+ +  g +  l+g  g gkst+  l+l    p+eg+i + g +  + +      +igvv+q  +l  + t+ en+  +g     ++  + ++  +   +f + +e    +rv     +lsgg k+r+++aral+  p+ll lde t+ ld  +  l+ + l +l+  g +t++l +h +         + v++ gr    g    l+ ++
  MMETSP1137-20121227|5665_1 715 QQTILDRLSLHVEPGTVCALVGKSGGGKSTLVHLLLRYYDPQEGRILLGGVDYRTlNLSSVHQRIGVVSQETQL-FNATIAENI-AYGAPAHTEAELLRAAESAqAHQFiSSFEDGYATRVgergQRLSGGQKQRIAVARALLRKPRLLCLDEATSALDAESEALVQKALDALIWTGdHTVVLVAHRLSTVVN-AHAIAVVDGGRIAQTGTHAQLLADK 930
                 56899*****************************************98876655415667789*******8888.567999996.799988888877766544313344245676666666222257***********************************************9984699999999876543.5667777777655556555555555 PP

>> TIGR03269  met_CoM_red_A2: methyl coenzyme M reductase system, component A2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.7   0.0     7e-20   5.1e-18     300     517 ..     719     928 ..     701     933 .. 0.88

  Alignments for each domain:
  == domain 1    score: 62.7 bits;  conditional E-value: 7e-20
   TIGR03269 300 vdnvslevkekeifGlvGtsGaGkttlskilaGvleptsGevevrvGdewvdmtkkgvlerGrakkyiGllhqeyalyphrtvlenlteaiglelpdel..akrkavivlkavGfdeekakeildklpdelseGerhrvalaqvlikeprivildeptGtmdpitkvkvaesilkareeleetfvivshdmdfvlevcdraalmrdGkivkiGdpeeive 517
                 +d +sl+v+ + +  lvG+sG Gk+tl ++l+   +p +G++ +  G   vd    ++l+   +++ iG++ qe +l+   t+ en++     +   el  a   a     +  f++ +a+ + ++  ++ls G++ r+a+a+ l+++pr++ lde t ++d  ++  v++++       ++t v+v+h +  v +    +a++  G+i ++G  +++++
  MMETSP1137-20121227|5665_1 719 LDRLSLHVEPGTVCALVGKSGGGKSTLVHLLLRYYDPQEGRILL--GG--VDY---RTLNLSSVHQRIGVVSQETQLFN-ATIAENIAYGAPAHTEAELlrAAESAQAHQFISSFEDGYATRVGER-GQRLSGGQKQRIAVARALLRKPRLLCLDEATSALDAESEALVQKALDALIWTGDHTVVLVAHRLSTVVNA-HAIAVVDGGRIAQTGTHAQLLA 928
                 7999************************************9754..43..554...55667789999***********7.79*****999999999998334455666667889********9988.689****************************************99998889999***********99985.678999*********9998876 PP

>> TIGR03740  galliderm_ABC: lantibiotic protection ABC transporter, ATP-binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.3   0.0   3.8e-20   2.7e-18      12     204 ..     715     919 ..     701     934 .. 0.78

  Alignments for each domain:
  == domain 1    score: 64.3 bits;  conditional E-value: 3.8e-20
   TIGR03740  12 kqavvnnvslkvkknsvygllGpnGaGkstllklltGllrktsGeilldgrewtrkdlkk....iGsliesPalyenltarenlk....vrtlllglpes...rieevlkivd..lentekkkakqfslGmkqrlGiaiallnkPkllildePtnGldPlGiqelreliksfpekG.itvilsshilsevelladhiGiiseGklky 204
                 +q++++ +sl+v+  +v +l+G  G Gkstl+ ll     +++G+ill g ++   +l++    iG++ ++  l++  t  en+      +t  + l  +   + ++ ++  +    +    + + +s G kqr+ +a all+kP+ll lde t  ld      +++ + ++   G  tv+l +h ls v   a  i ++  G++  
  MMETSP1137-20121227|5665_1 715 QQTILDRLSLHVEPGTVCALVGKSGGGKSTLVHLLLRYYDPQEGRILLGGVDYRTLNLSSvhqrIGVVSQETQLFNA-TIAENIAygapAHTEAELLRAAesaQAHQFISSFEdgYATRVGERGQRLSGGQKQRIAVARALLRKPRLLCLDEATSALDAESEALVQKALDALIWTGdHTVVLVAHRLSTVV-NAHAIAVVDGGRIAQ 919
                 799*********************************************99998887775422237888888888865.666777522224555444444400145555555541123334567889*********************************99999999999888777479*********995.588999999999875 PP

>> TIGR03771  anch_rpt_ABC: anchored repeat-type ABC transporter, ATP-binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.0   0.5   1.9e-19   1.4e-17       1     200 [.     724     927 ..     724     937 .. 0.84

  Alignments for each domain:
  == domain 1    score: 62.0 bits;  conditional E-value: 1.9e-19
   TIGR03771   1 lsvdkGellgllGpnGaGkttllrailglikvakGsvkvagkssrk.....grreiGyvpqrhefawdfpidveqtvlsGragl..iGllrrpkkadfaavadalervklteladrpvGelsGGqrqrvlvaralavkpslllldepftGldlpsqellvelfeela.gegtailmtthdlaeavatcdrvvllngrvvadgapdqlq 200
                 l+v++G + +l+G  G Gk+tl+  +l    +++G++ ++g   r+      +++iG v q  ++   f   +++ +  G   +    llr ++ a+     +++e    t++ +r   +lsGGq+qr+ varal  kp+ll lde  + ld  s+ l+ + + +l  + ++++++++h l+  v++    v+  gr+  +g+ +ql 
  MMETSP1137-20121227|5665_1 724 LHVEPGTVCALVGKSGGGKSTLVHLLLRYYDPQEGRILLGGVDYRTlnlssVHQRIGVVSQETQL---FNATIAENIAYGAPAHteAELLRAAESAQAHQFISSFEDGYATRVGERG-QRLSGGQKQRIAVARALLRKPRLLCLDEATSALDAESEALVQKALDALIwTGDHTVVLVAHRLSTVVNAHAIAVVDGGRIAQTGTHAQLL 927
                 57899*********************************999765531111145678888887654...7778888888887655115689999999999999999999999999997.58*******************************************9997245699*********99998777777778888899999986 PP

>> TIGR03415  ABC_choXWV_ATP: choline ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.3   0.0   2.4e-19   1.7e-17      42     257 ..     721     931 ..     715     943 .. 0.84

  Alignments for each domain:
  == domain 1    score: 61.3 bits;  conditional E-value: 2.4e-19
   TIGR03415  42 dasldveeGeilvlmGlsGsGkssllravnglnpvsrGkvlvkdedkevdvakcdeatlrklrtkrvsmvfqkfallPWrtveenvafGlelsGvakaerrkrveeqlelv.glaeWadkkvge....lsGGmqqrvGlarafateadillmdePfsaldPliraklqdellelqkklkktivfvshdldealklGnriaimegGrivqlgtpeeivlkPa 257
                   sl+ve G ++ l+G sG Gks+l+  + +      G++l+      vd  +++ +++     +r+ +v q+  l+   t++en+a+G   +  a+  r  + ++  +++ ++++   ++vge    lsGG +qr+ +ara+  +  +l +de  sald    a +q  l +l  +  +t+v+v+h l   +     ia+++gGri q+gt  +++++ +
  MMETSP1137-20121227|5665_1 721 RLSLHVEPGTVCALVGKSGGGKSTLVHLLLRYYDPQEGRILLG----GVDYRTLNLSSV----HQRIGVVSQETQLFN-ATIAENIAYGAPAHTEAELLRAAESAQAHQFIsSFEDGYATRVGErgqrLSGGQKQRIAVARALLRKPRLLCLDEATSALDAESEALVQKALDALIWTGDHTVVLVAHRLSTVVN-AHAIAVVDGGRIAQTGTHAQLLADKH 931
                 679****************************999999999985....456655555544....358999999988775.89*********99999998888777776666624555555555544444*************************************************************99887.578**************999887655 PP

>> TIGR01978  sufC: FeS assembly ATPase SufC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.3   0.0   5.4e-19   3.9e-17      12     229 ..     715     923 ..     701     933 .. 0.78

  Alignments for each domain:
  == domain 1    score: 60.3 bits;  conditional E-value: 5.4e-19
   TIGR01978  12 dkeiLkglnlevkkGevhaimGpnGsGkstLskvlaghekyevtsGeiklkgqdlleleveeraraGlflafqapeeipGvsnkeflrsalnavrkargeeeldllefekllkeklelleldeelleRslneG..fsGGekkrneilqlallePklaiLDeiDsGlDvDalkivaegvnklree.ekalliithyerllelikPdvvhvlldGrivksGdv 229
                 +++iL+ l+l+v++G+v a++G+ G GkstL++ l     y  ++G+i l g d   l+     +  + +  q  +     +++e +   + a++    e   +ll  ++  +++  + +++  +++R    G   sGG k+r  + + +l +P+l  LDe+ s lD ++  +v + ++ l  + ++++++++h  rl   ++   + v+  Gri+++G  
  MMETSP1137-20121227|5665_1 715 QQTILDRLSLHVEPGTVCALVGKSGGGKSTLVHLLLR--YYDPQEGRILLGGVDYRTLNLSSVHQ-RIGVVSQETQLFN-ATIAENIAYGAPAHT----E--AELLRAAESAQAHQFISSFEDGYATRVGERGqrLSGGQKQRIAVARALLRKPRLLCLDEATSALDAESEALVQKALDALIWTgDHTVVLVAH--RLSTVVNAHAIAVVDGGRIAQTGTH 923
                 589*******************************986..56778***********9999887543.3444455554433.334444444444444....2..2333344445555556666777777777766558********************************************98776999999999..79999*****************975 PP

>> TIGR01257  rim_protein: rim ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.8   0.1   7.4e-19   5.3e-17     945    1167 ..     718     945 ..     703     953 .. 0.86

  Alignments for each domain:
  == domain 1    score: 57.8 bits;  conditional E-value: 7.4e-19
   TIGR01257  945 avdrlnitfyenqitaflghngagktttlsiltgllpptsgtvlvggkdiet.nldavrqslgmcpqhnilfhhltvaehilfyaqlkg.....rsweeaqlemeamledtglhhkrneeaqdlsgglqrklsvaiafvgdakvvvldeptsgvdpysrrsiwdll..lkyrsgrtiimsthhmdeadllgdriaiisqgrlycsgtplflkncfgtglyltlvrkmkniq 1167
                   +drl + +    + a++g+ g gk+t + +l     p  g +l+gg d  t nl +v+q +g++ q   lf   t+ae i + a  +      r+ e aq        + g   +  e  q lsgg +++++va a++   +++ lde ts +d  s   +   l  l +   +t+++ +h +    +    ia++  gr+  +gt   l      g+y +lv k    q
  MMETSP1137-20121227|5665_1  718 ILDRLSLHVEPGTVCALVGKSGGGKSTLVHLLLRYYDPQEGRILLGGVDYRTlNLSSVHQRIGVVSQETQLFN-ATIAENIAYGAPAHTeaellRAAESAQAHQFISSFEDGYATRVGERGQRLSGGQKQRIAVARALLRKPRLLCLDEATSALDAESEALVQKALdaLIWTGDHTVVLVAHRLST-VVNAHAIAVVDGGRIAQTGTHAQLLA-DKHGIYASLVAKQMHKQ 945 
                  589*****999**************************************99879****************996.69******9887654223336789999877666666699999******************************************9988776644668888999999999975.58899***************887654.45789999998755544 PP

>> TIGR03522  GldA_ABC_ATP: gliding motility-associated ABC transporter ATP-binding subunit GldA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.6   0.0     1e-18   7.2e-17       2     220 ..     700     927 ..     699     953 .. 0.80

  Alignments for each domain:
  == domain 1    score: 59.6 bits;  conditional E-value: 1e-18
   TIGR03522   2 svevsdlsklyg...kqkaldevsfeaekGeivGflGPnGaGkstlmkiltgylkadsGsvavagedvlk.nslevrkniGylPehnPlyldlyvreylefsaalyklkg...rklkkrveelielv..GlkaeqhkkigalskGyrqrvGlakallhdPkvlildePttGldPnqlveirevikei..akdktvilsthimqevealcdrviiinkGkivadkkleelk 220
                 sv++++++  y    +q +ld +s+++e+G +  ++G  G Gkstl+ +l  y  ++ G + + g d  + n   v++ iG + +   l+    + e +++ a  +   +    +   + +++i     G  +    + ++ls G +qr+ +a+all +P++l lde t+ ld +    +++ +  +  + d tv+l +h +  v    + + +++ G+i    +  +l 
  MMETSP1137-20121227|5665_1 700 SVTIEEVTFRYQmrpQQTILDRLSLHVEPGTVCALVGKSGGGKSTLVHLLLRYYDPQEGRILLGGVDYRTlNLSSVHQRIGVVSQETQLFNA-TIAENIAYGAPAHTEAEllrAAESAQAHQFISSFedGYATRVGERGQRLSGGQKQRIAVARALLRKPRLLCLDEATSALDAESEALVQKALDALiwTGDHTVVLVAHRLSTVVN-AHAIAVVDGGRIAQTGTHAQLL 927
                 7788888888863336899************************************************86626678************99965.688999999988865541114455677777765433777777888889********************************9987777777766534679********9988754.4678889999998888777773 PP

>> TIGR02324  CP_lyasePhnL: phosphonate C-P lyase system protein PhnL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.0   0.1   2.6e-18   1.9e-16      21     197 ..     716     887 ..     701     911 .. 0.78

  Alignments for each domain:
  == domain 1    score: 58.0 bits;  conditional E-value: 2.6e-18
   TIGR02324  21 lpvlkevsleveaGelvalsGksGaGkstllkslyanYlpesgrilvrhegeivdlvkaserevlevRrktigyvsqfLrviPRvsalevvaepll..elGvereearakakellarln..iperLWslaPatfsGGekqRvniaraliadrPiLL.LdePtasLdaanrkvvvelikeaka 197
                   +l+++sl+ve G + al GksG Gkstl++ l + Y p+ gril+   +  +        ++ +v  ++ig vsq  +      a +++  +    e  + r++  a+a+++++ ++   + r+ +   +  sGG kqR+ +aral+  +P+LL Lde t++Lda   + v + ++ +  
  MMETSP1137-20121227|5665_1 716 QTILDRLSLHVEPGTVCALVGKSGGGKSTLVHLLLRYYDPQEGRILLGGVDYRT-------LNLSSVH-QRIGVVSQETQLFNATIAENIAYGAPAhtEAELLRAAESAQAHQFISSFEdgYATRVGERG-QRLSGGQKQRIAVARALLR-KPRLLcLDEATSALDAESEALVQKALDALIW 887
                 578999***************************************998744333.......3334444.679*****99999999999998654330134455666667888999999844577888877.899****************.8887769**********99999887776554 PP

>> TIGR02633  xylG: D-xylose ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.2   0.0   1.6e-18   1.1e-16      15     242 ..     717     942 ..     709     948 .. 0.77

  Alignments for each domain:
  == domain 1    score: 58.2 bits;  conditional E-value: 1.6e-18
   TIGR02633  15 kaldnidlklraGeivslcGenGaGkstlmkvlsgvyphGtydGeilfegeelkassirdterkGiviihqeltlvkelsvleniflGneitlkGglmdydamvlrakellrelkld.asnvtrpvsdlGlGqqqlveiakalnkqvrllildepsaslteketeilld.iirdlk.akgvacvyishkleevkavsdtisvirdGqhvatkdaeal..seddiitmmvGrel 242
                 + ld ++l++++G + +l G+ G Gkstl+ +l   y     +G il  g + ++ +++   +  i ++ qe  l  + +++eni  G     +   +  +a   +a++++   +   a+ v    + l +Gq+q + +a+al ++ rll lde +++l ++  e l++  +  l  + + + v ++h+l  v   +  i+v+  G+   t   ++l  +++ i + +v +++
  MMETSP1137-20121227|5665_1 717 TILDRLSLHVEPGTVCALVGKSGGGKSTLVHLLLRYYD--PQEGRILLGGVDYRTLNLSSVHQ-RIGVVSQETQLF-NATIAENIAYGAPAHTEAE-LLRAAESAQAHQFISSFEDGyATRVGERGQRLSGGQKQRIAVARALLRKPRLLCLDEATSALDAE-SEALVQkALDALIwTGDHTVVLVAHRLSTVVN-AHAIAVVDGGRIAQTGTHAQLlaDKHGIYASLVAKQM 942
                 56999****************************99885..569***************98865.6999****9987.679********99877774.5555667789999987654313334444556779***************************9754.44444404444441445677899****99865.5789998777765554444441145567788887776 PP

>> TIGR00956  3a01205: pleiotropic drug resistance family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.1   0.0   8.4e-18     6e-16     763     964 ..     704     902 ..     678     908 .. 0.82

  Alignments for each domain:
  == domain 1    score: 55.1 bits;  conditional E-value: 8.4e-18
   TIGR00956 763 rdltyevkikkekrvlLdevdGwvkPGkltALmGasGAGkttLlnvLaeRvt..tGvitegdrlvngrkld.ssFqRsiGYvqqqDlHletstvreaLrfsAylRqpkevskkekneyveevikllelesyadAvvGvpGeGLnveqRkrltigveLvAkPklllFlDePtsGLDsqtawsivkllrkladaGq.ailCtiHqPsa 964
                  ++t+  +++  ++++Ld ++ +v+PG++ AL+G+sG Gk tL+  L    +   G i  g   v+ r+l+ ss + +iG v q+   l ++t+ e + + A     +e+ ++       + i+  e + ya   vG+ G+ L+  q++r++++  L  kP  ll lDe ts LD+ + + + k l  l  +G  +++   H  s 
  MMETSP1137-20121227|5665_1 704 EEVTFRYQMRP-QQTILDRLSLHVEPGTVCALVGKSGGGKSTLVHLLLRYYDpqEGRILLGG--VDYRTLNlSSVHQRIGVVSQE-TQLFNATIAENIAYGAPAHTEAELLRAAESAQAHQFISSFE-DGYA-TRVGERGQRLSGGQKQRIAVARALLRKP-RLLCLDEATSALDAESEALVQKALDALIWTGDhTVVLVAHRLST 902
                 56777777765.568*******************************9877651144444333..444555546788899*99875.68999*******************99999999999998776.4565.569*************************.7789********************99999985266666676665 PP

>> TIGR01194  cyc_pep_trnsptr: cyclic peptide transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   1.0   3.7e-05    0.0027      51     175 ..     420     546 ..     372     579 .. 0.76
   2 !   40.2   0.0   4.8e-13   3.5e-11     355     508 ..     717     878 ..     666     920 .. 0.76

  Alignments for each domain:
  == domain 1    score: 14.2 bits;  conditional E-value: 3.7e-05
   TIGR01194  51 lrqvllsfvGlsllalls.rivadlftayvsqriiarlrkelgekvlsapleeverrrahrlltlltsdidtlsd.tllilttllvelavtlfglaylaylsvv..vflltvvlivlGvaayllarsrG 175
                 +  v+l +   + +al +   v +l    +++ri   +r  l + v+   +   +  r+  l   +tsd+  + + ++ +l+tl+ ++ ++++g+a     s+   + + t vl ++ v+  +   s+ 
  MMETSP1137-20121227|5665_1 420 MD-VVLLYIA-CSIALGFlGGVRSLCFNLIGRRITVSVRNTLFRSVIIQDIAFFDGMRTGDLTQRMTSDVRAMVApVTTTLSTLISNSMLLVGGVAMCFVTSWQlsMVAYTTVLPIMHVTEAYAKWSGK 546
                 22.3333333.45566541567899999******************************************98766267789999999999999999888888852267788888888888877766665 PP

  == domain 2    score: 40.2 bits;  conditional E-value: 4.8e-13
   TIGR01194 355 falGpidlriasGelvyivGenGcGkstliklllGlyipqeGellldGeavsdesrddyrdlfsavfadyylfddlvqpdekkqasldqattylsrleledk...vkvedlnysttt.....dlstGqrkrlalvnayleerpvllldewaadqdpafkrvf 508
                   l  + l+++ G +  +vG+ G Gkstl+ lll  y pqeG++ll G            +    v  +  lf+  +  +    a  +   + l+  e ++    ++  + +y+t        ls Gq++r+a+  a l +  +l lde ++  d     + 
  MMETSP1137-20121227|5665_1 717 TILDRLSLHVEPGTVCALVGKSGGGKSTLVHLLLRYYDPQEGRILLGGVDYRTLNLSSVHQRIGVVSQETQLFNATIAENIAYGAPAHTEAELLRAAESAQAhqfISSFEDGYATRVgergqRLSGGQKQRIAVARALLRKPRLLCLDEATSALDAESEALV 878
                 45778899*****************************************9999999999999*************999776666666666666666655433112566677888643222227******************99******9887776655554 PP

>> TIGR02323  CP_lyasePhnK: phosphonate C-P lyase system protein PhnK
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.4   0.6     5e-15   3.6e-13      21     233 ..     722     937 ..     702     942 .. 0.76

  Alignments for each domain:
  == domain 1    score: 47.4 bits;  conditional E-value: 5e-15
   TIGR02323  21 vsf.lypGevlgivGesGsGkstllkalaarlladaGevtyesrsrelellalseaerrlllrtewGlvhqnprGlrmevsaGanigerllavga.rhyGkiraaakwlekveid.aari..kpaafsGGmqqrlqiarnlvtrprlvfm.eptGGl.vsvqarll.llrglvrelglaviivth.lavarllaqrllvmkqGrvvesGlt.rvl.pkh.pytql 233
                 +s+ + pG v ++vG+sG Gkstl++ l     +++G +     +     l+ls  ++r       G+v q+++ +  +++     g    +  +     + ++a ++++  e   a+r+  + + +sGG +qr+ +ar+l+ +prl+ + e t  l    +a +   l +l+   + +v++v+h l  + + a+ + v+  Gr+ ++G   ++l  kh  y+ l
  MMETSP1137-20121227|5665_1 722 LSLhVEPGTVCALVGKSGGGKSTLVHLLLRYYDPQEGRILLGGVD--YRTLNLSSVHQR------IGVVSQETQLFNATIAENIAYGAPAHTEAElLRAAESAQAHQFISSFEDGyATRVgeRGQRLSGGQKQRIAVARALLRKPRLLCLdEATSALdAESEALVQkALDALIWTGDHTVVLVAHrL-STVVNAHAIAVVDGGRIAQTGTHaQLLaDKHgIYASL 937
                 566689*********************************988766..666788888888......5888888876655554333333222222220123455666679999986525688878899**********************99899999955555555578999***9**********55.55578999*************8878886444145544 PP

>> TIGR00954  3a01203: peroxysomal long chain fatty acyl transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       4.8   3.4e+02      96     131 ..     362     397 ..     358     400 .. 0.84
   2 !   33.2   0.0   5.8e-11   4.2e-09     466     622 ..     716     878 ..     701     907 .. 0.79

  Alignments for each domain:
  == domain 1    score: -2.9 bits;  conditional E-value: 4.8
   TIGR00954  96 lllilqavlLviRtllsvyvakldgqlvksivrrsp 131
                  l+il  +++ +  +ls+++ + +gq+   ++++++
  MMETSP1137-20121227|5665_1 362 ALFILALLCVTVTSILSLFLPNFQGQIMDHVIAGRT 397
                 577888888888889***************999875 PP

  == domain 2    score: 33.2 bits;  conditional E-value: 5.8e-11
   TIGR00954 466 dvlieeLsfevksGnhlLiiGPnGcGKsslfRilgelW.Pvyg..........glltkpeegklFyvPqrPYmslgtlRdqiiYPdssedfkerglsdkdLeqiLeevkLedller.eggw.davqdWkdvLsgGekqRiamARlfyHkPkfavLDEctsAvsvdvEdkl 622
                 + ++++Ls++v+ G+   ++G  G GKs l  +l   + P  g           l     ++++  v q   + + t+ + i Y            ++++L +  e  + ++ +   e g+   v +  + LsgG+kqRia+AR +  kP+   LDE+tsA+  + E  +
  MMETSP1137-20121227|5665_1 716 QTILDRLSLHVEPGTVCALVGKSGGGKSTLVHLLLRYYdPQEGrillggvdyrTLNLSSVHQRIGVVSQETQLFNATIAENIAYGAPA-------HTEAELLRAAESAQAHQFISSfEDGYaTRVGERGQRLSGGQKQRIAVARALLRKPRLLCLDEATSALDAESEALV 878
                 5678999999999999999999999999999998877636666888887776444445567889999999999999999999996544.......3567777777777777766532555515799999********************************999988655 PP

>> TIGR00630  uvra: excinuclease ABC subunit A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   0.0     0.038       2.7     622     654 ..     718     750 ..     707     757 .. 0.85
   2 !   20.6   0.0   3.2e-07   2.3e-05     821     900 ..     832     909 ..     814     926 .. 0.87

  Alignments for each domain:
  == domain 1    score: 3.8 bits;  conditional E-value: 0.038
   TIGR00630 622 nlkdidvsiplglltvitGvsgsGkstLindiL 654
                  l  +++++  g++ ++ G sg GkstL++ +L
  MMETSP1137-20121227|5665_1 718 ILDRLSLHVEPGTVCALVGKSGGGKSTLVHLLL 750
                 577789999999*****************8666 PP

  == domain 2    score: 20.6 bits;  conditional E-value: 3.2e-07
   TIGR00630 821 klGqpattLsGGeaqrvkLakeLskrstgktlyilDePttGLhfdDikkLlevlqrlvdkG.ntvvviehnldviksaDyi 900
                 ++G+  + LsGG  qr+ +a+ L ++     l  lDe t  L  +  + + + l+ l+ +G +tvv++ h l  + +a  i
  MMETSP1137-20121227|5665_1 832 RVGERGQRLSGGQKQRIAVARALLRKP---RLLCLDEATSALDAESEALVQKALDALIWTGdHTVVLVAHRLSTVVNAHAI 909
                 799999*****************9985...699************9999999******99945999*******99999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1014 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       276  (0.0672843); expected 82.0 (0.02)
Passed bias filter:                      158  (0.0385178); expected 82.0 (0.02)
Passed Vit filter:                        80  (0.0195027); expected 4.1 (0.001)
Passed Fwd filter:                        57  (0.0138957); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              57  [number of targets reported over threshold]
# CPU time: 1.96u 0.19s 00:00:02.15 Elapsed: 00:00:00.98
# Mc/sec: 1365.68
//
Query:       MMETSP1137-20121227|5666_1  [L=261]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (261 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        60  (0.014627); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.13s 00:00:00.34 Elapsed: 00:00:00.39
# Mc/sec: 883.31
//
Query:       MMETSP1137-20121227|5667_1  [L=63]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (63 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        53  (0.0129205); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.13s 00:00:00.25 Elapsed: 00:00:00.25
# Mc/sec: 332.61
//
Query:       MMETSP1137-20121227|5668_1  [L=336]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (336 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       187  (0.0455875); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.14s 00:00:00.42 Elapsed: 00:00:00.34
# Mc/sec: 1304.36
//
Query:       MMETSP1137-20121227|5669_1  [L=818]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (818 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       127  (0.0309605); expected 82.0 (0.02)
Passed bias filter:                       99  (0.0241346); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.51u 0.14s 00:00:00.65 Elapsed: 00:00:00.95
# Mc/sec: 1136.50
//
Query:       MMETSP1137-20121227|5670_1  [L=81]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.03   11.6   0.3      0.035   11.4   0.2    1.1  1  TIGR00027 mthyl_TIGR00027: putative methyltransferase, TIGR00027 family


Domain annotation for each model (and alignments):
>> TIGR00027  mthyl_TIGR00027: putative methyltransferase, TIGR00027 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.2   8.4e-06     0.035       7      53 ..      24      71 ..      18      78 .. 0.78

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 8.4e-06
   TIGR00027  7 vaaarAleterpdrlvrDplAaaflsaagr.lrldskleaeaeaeeke 53
                +aa rA+  +r+ +l +D +A+ ++    + +  d  l+++++ e+++
  MMETSP1137-20121227|5670_1 24 PAARRAIAETRSTPLLKDVVAQTLAATDDArVAYDLVLRPDTGIETRD 71
                6999********************987776555666666666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (81 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       109  (0.0265724); expected 82.0 (0.02)
Passed bias filter:                      102  (0.0248659); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.86
# Mc/sec: 124.32
//
Query:       MMETSP1137-20121227|5671_1  [L=129]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (129 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       120  (0.029254); expected 82.0 (0.02)
Passed bias filter:                      111  (0.02706); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.17s 00:00:00.33 Elapsed: 00:00:00.35
# Mc/sec: 486.47
//
Query:       MMETSP1137-20121227|5672_1  [L=239]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (239 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        70  (0.0170648); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.15s 00:00:00.39 Elapsed: 00:00:00.42
# Mc/sec: 751.08
//
Query:       MMETSP1137-20121227|5673_1  [L=104]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (104 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       205  (0.0499756); expected 82.0 (0.02)
Passed bias filter:                      166  (0.0404681); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.17s 00:00:00.35 Elapsed: 00:00:00.26
# Mc/sec: 527.96
//
Query:       MMETSP1137-20121227|5674_1  [L=153]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (153 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       113  (0.0275475); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.15s 00:00:00.32 Elapsed: 00:00:00.31
# Mc/sec: 651.43
//
Query:       MMETSP1137-20121227|5675_1  [L=365]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.8e-19   66.1   0.3    1.2e-18   65.5   0.2    1.2  1  TIGR02349 DnaJ_bact: chaperone protein DnaJ
    1.6e-11   41.1   0.4    2.6e-11   40.5   0.3    1.2  1  TIGR03835 termin_org_DnaJ: terminal organelle assembly protein TopJ
    8.6e-05   20.5   0.3    0.00016   19.6   0.2    1.3  1  TIGR00714 hscB: Fe-S protein assembly co-chaperone HscB


Domain annotation for each model (and alignments):
>> TIGR02349  DnaJ_bact: chaperone protein DnaJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.5   0.2   8.4e-22   1.2e-18       8      83 ..      23     103 ..      18     147 .. 0.71

  Alignments for each domain:
  == domain 1    score: 65.5 bits;  conditional E-value: 8.4e-22
   TIGR02349   8 vskdAseeeikkAYrklakkyHPDrnkg.....ekeaeekfkeineAyevLsdeekraqYDqfghagleggaggggagfeg 83 
                 v   As  e++kAYrkla+kyHPD++++     + +ae +fk+i++AyevLs +e r++YD+  + + +++++  g+g ++
  MMETSP1137-20121227|5675_1  23 VGAAASPVELRKAYRKLAMKYHPDKHREssealRSAAERQFKDITQAYEVLSRPETRRAYDEANQPEQKSASAPRGHGESD 103
                 56679999******************99666666789*************************7766666554433332222 PP

>> TIGR03835  termin_org_DnaJ: terminal organelle assembly protein TopJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.5   0.3   1.9e-14   2.6e-11      14      65 ..      27      84 ..      19      86 .. 0.83

  Alignments for each domain:
  == domain 1    score: 40.5 bits;  conditional E-value: 1.9e-14
   TIGR03835 14 adeqeikkafrkLakkyhPDrnka.ad.....aakifaeineandvLsnPkkraryDk 65
                a   e++ka+rkLa kyhPD+ ++ ++     a++ f++i  a++vLs P+ r  yD 
  MMETSP1137-20121227|5675_1 27 ASPVELRKAYRKLAMKYHPDKHREsSEalrsaAERQFKDITQAYEVLSRPETRRAYDE 84
                666799**************9886433223337999********************95 PP

>> TIGR00714  hscB: Fe-S protein assembly co-chaperone HscB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.2   1.2e-07   0.00016       8      54 ..      32      80 ..      29      83 .. 0.83

  Alignments for each domain:
  == domain 1    score: 19.6 bits;  conditional E-value: 1.2e-07
   TIGR00714  8 LrkryrklQkqyHPD...vsksaqeqaaalqqStelNqAykTLkdplkRa 54
                Lrk yrkl  +yHPD    s++a+   aa +q  ++ qAy+ L  p  R 
  MMETSP1137-20121227|5675_1 32 LRKAYRKLAMKYHPDkhrESSEALR-SAAERQFKDITQAYEVLSRPETRR 80
                99*************8855555554.889999***********9987665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (365 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        98  (0.0238908); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.29u 0.20s 00:00:00.49 Elapsed: 00:00:00.54
# Mc/sec: 892.15
//
Query:       MMETSP1137-20121227|5676_1  [L=145]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (145 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        33  (0.00804486); expected 82.0 (0.02)
Passed bias filter:                       31  (0.00755729); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.13s 00:00:00.28 Elapsed: 00:00:00.63
# Mc/sec: 303.78
//
Query:       MMETSP1137-20121227|5678_1  [L=234]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (234 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       142  (0.0346173); expected 82.0 (0.02)
Passed bias filter:                      110  (0.0268162); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.15s 00:00:00.35 Elapsed: 00:00:00.51
# Mc/sec: 605.60
//
Query:       MMETSP1137-20121227|5679_1  [L=317]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.6e-14   50.9   0.0    3.9e-14   50.3   0.0    1.2  1  TIGR01622 SF-CC1: splicing factor, CC1-like family
    7.8e-12   42.9   0.0    1.2e-11   42.3   0.0    1.2  1  TIGR01628 PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family
    1.7e-11   41.1   0.0    2.6e-11   40.6   0.0    1.2  1  TIGR01642 U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor
    2.1e-09   35.2   0.0    3.3e-09   34.6   0.0    1.5  1  TIGR01661 ELAV_HUD_SF: ELAV/HuD family splicing factor
    2.2e-09   35.2   0.0    4.7e-09   34.1   0.0    1.5  1  TIGR01659 sex-lethal: sex-lethal family splicing factor
      1e-05   22.3   0.1      1e-05   22.3   0.1    2.1  2  TIGR01645 half-pint: poly-U binding splicing factor, half-pint family
    0.00027   17.7   0.0    0.00041   17.1   0.0    1.3  1  TIGR01648 hnRNP-R-Q: hnRNP-R, Q splicing factor family
     0.0019   15.0   0.0     0.0027   14.5   0.0    1.3  1  TIGR01649 hnRNP-L_PTB: hnRNP-L/PTB/hephaestus splicing factor family


Domain annotation for each model (and alignments):
>> TIGR01622  SF-CC1: splicing factor, CC1-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.3   0.0   7.6e-17   3.9e-14     229     300 ..     117     188 ..     102     208 .. 0.90

  Alignments for each domain:
  == domain 1    score: 50.3 bits;  conditional E-value: 7.6e-17
   TIGR01622 229 fnitEqeLrqiFepFGeielvqlqkDpetGrskGyGFiqFsdaeeakeAleklNGlelAGReikvglasDvt 300
                  + tEq++ ++  p+G + +vq+    +tG s+Gy F+ +   e a +A+ ++N + + GR+++v  ++  +
  MMETSP1137-20121227|5679_1 117 NSYTEQQVYDLASPYGTVTFVQIATHRDTGASRGYAFVSYDTVEAAENAIANMNNMTVEGRQLRVEVGKADK 188
                 678*************************************************************99877555 PP

>> TIGR01628  PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.3   0.0   2.3e-14   1.2e-11      89     162 ..     108     182 ..     100     195 .. 0.87

  Alignments for each domain:
  == domain 1    score: 42.3 bits;  conditional E-value: 2.3e-14
   TIGR01628  89 gNifvKnLdksidnkaLfdtFskfGnilsckvatd.eeGkSkgYgfvhfedeesAkeAieklNgvllndkevyvg 162
                 +N+ +  +++s +++ ++d+ s +G+++ +++at  ++G S+gY+fv++++ e+A++Ai ++N + ++ ++  v+
  MMETSP1137-20121227|5679_1 108 ANLAIFCIPNSYTEQQVYDLASPYGTVTFVQIATHrDTGASRGYAFVSYDTVEAAENAIANMNNMTVEGRQLRVE 182
                 47777778999999*******************97368*****************************99988775 PP

>> TIGR01642  U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.6   0.0     5e-14   2.6e-11     301     372 ..     112     183 ..      99     198 .. 0.90

  Alignments for each domain:
  == domain 1    score: 40.6 bits;  conditional E-value: 5e-14
   TIGR01642 301 ignLPldlkddqvkeLLesFGdLkaFnliKdlatGlsKGyaFceykdssvtdlAiaaLnGiklgdkkLnvkr 372
                 i  +P+ ++++qv +L  ++G +   ++   ++tG s+GyaF+ y+    ++ Aia +n +++ +++L v  
  MMETSP1137-20121227|5679_1 112 IFCIPNSYTEQQVYDLASPYGTVTFVQIATHRDTGASRGYAFVSYDTVEAAENAIANMNNMTVEGRQLRVEV 183
                 6679***************************************************************99864 PP

>> TIGR01661  ELAV_HUD_SF: ELAV/HuD family splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.6   0.0   6.5e-12   3.3e-09      88     165 ..     106     183 ..      97     309 .. 0.81

  Alignments for each domain:
  == domain 1    score: 34.6 bits;  conditional E-value: 6.5e-12
   TIGR01661  88 kganlyvsGlPktmtqkeleslfspfGkiitsrilsdnvtdlskGvGfirfdkreeadraikalnGttPsgatepitv 165
                 kganl +  +P + t +++  l sp+G +   +i + + t+ s+G  f+ +d  e a++ai ++n  t +g   ++ v
  MMETSP1137-20121227|5679_1 106 KGANLAIFCIPNSYTEQQVYDLASPYGTVTFVQIATHRDTGASRGYAFVSYDTVEAAENAIANMNNMTVEGRQLRVEV 183
                 899999999999999999999999999999999999999999999999999999999999999998887766555555 PP

>> TIGR01659  sex-lethal: sex-lethal family splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.1   0.0   9.3e-12   4.7e-09     106     196 ..     106     198 ..      99     205 .. 0.67

  Alignments for each domain:
  == domain 1    score: 34.1 bits;  conditional E-value: 9.3e-12
   TIGR01659 106 sgtnlivnylpqdmtdrelyalfrtigpintcrimrdyktgysfgyafvdfaseadsqraikslngitvrnk..rlkvsyarpggesikdtnl 196
                 +g+nl +  +p+  t++++y l    g +   +i     tg s gyafv + +   +  ai ++n +tv  +  r+ v  a  g e +   nl
  MMETSP1137-20121227|5679_1 106 KGANLAIFCIPNSYTEQQVYDLASPYGTVTFVQIATHRDTGASRGYAFVSYDTVEAAENAIANMNNMTVEGRqlRVEVGKADKGXEAVLIMNL 198
                 566777777777777777777777777777777777777777777777777777777777777777777444114444556666666665555 PP

>> TIGR01645  half-pint: poly-U binding splicing factor, half-pint family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   2.6      0.69   3.5e+02     297     384 ..      11     101 ..       2     108 .. 0.68
   2 !   22.3   0.1     2e-08     1e-05     212     277 ..     119     186 ..      92     197 .. 0.82

  Alignments for each domain:
  == domain 1    score: -2.6 bits;  conditional E-value: 0.69
   TIGR01645 297 aavaaaaatakitaaeavagaavlglraqspatassslvtdieakavvssakkeae......evpalpqaapavlkdeviteekP.vaPsllaiP 384
                    a  aa a i a++a       +l+a+  a+ +++ + ++ a++v+ +++ ++       +++a p  ap    ++v  +  P ++P+ +a P
  MMETSP1137-20121227|5679_1  11 ENAALIAARAEINALKAEN----NSLKAEIAAIKAGAPANSLIAPPVLWPPQGNSSygssfsPYGASPYGAPGYGMPGVYGAAAPpARPPVIANP 101
                 3344455566666665433....334567777788888888888888877776665555555788888999999999999887765999988877 PP

  == domain 2    score: 22.3 bits;  conditional E-value: 2e-08
   TIGR01645 212 lseedlksvfeafGeivkcklaraptlrkhkGfGflefenlqsqseaiasmnlfdlGGqllrv..Gka 277
                  +e+ +  +   +G +   ++a    ++  +G+ f+ ++  ++ ++aia mn + + G+ lrv  Gka
  MMETSP1137-20121227|5679_1 119 YTEQQVYDLASPYGTVTFVQIATHRDTGASRGYAFVSYDTVEAAENAIANMNNMTVEGRQLRVevGKA 186
                 566666667778999999*************************************99999*9633665 PP

>> TIGR01648  hnRNP-R-Q: hnRNP-R, Q splicing factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.0   8.1e-07   0.00041      57     132 ..     106     181 ..      79     188 .. 0.75

  Alignments for each domain:
  == domain 1    score: 17.1 bits;  conditional E-value: 8.1e-07
   TIGR01648  57 rGcevfvGkiPrdlyedelvPlfekvGkiyelrlmmd.ldGknrGyafvtfcnkeeakeavkelnnyeirpGrllGv 132
                 +G+++ +  iP    e ++  l    G +  +++      G  rGyafv +   e+a++a+ ++nn  + +Gr l v
  MMETSP1137-20121227|5679_1 106 KGANLAIFCIPNSYTEQQVYDLASPYGTVTFVQIATHrDTGASRGYAFVSYDTVEAAENAIANMNNMTV-EGRQLRV 181
                 4566777777777777777777777777777777766456999*********************99987.5777766 PP

>> TIGR01649  hnRNP-L_PTB: hnRNP-L/PTB/hephaestus splicing factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.0   5.4e-06    0.0027      10     367 ..     115     180 ..      56     204 .. 0.64

  Alignments for each domain:
  == domain 1    score: 14.5 bits;  conditional E-value: 5.4e-06
   TIGR01649  10 lpeevveadlvelliefGkvsyvlvlkgkrq......AlvEfedeesAkalVnfatsvpiqirGrtvfvqyStskelkrdgnakalsdvesvssgslalveaGlesagpnkVLrvivenllypvtlDvlyqifnrvGkVlrivifkknnsvqAlvefesvesAqkAKaaldgadiYngCCtLkidyakltrlnVkrndddsrDytnPdlpaGerdveleqtaaqrqdallrdrPssygdavdglssrtgalaplalgdraglaaglapsreslalasaalapaisstapaasglgsVllvsnLeeekvtpdalFnlfgvYGdvervkilknkketalvemadpqqaqlalthLdkvklfgkklr 367
                 +p++ +e ++ +l +++G+v++v +  ++        A+v ++++e+A++++                                                                                                                                                                                                                                                                                                            ++++ + g++lr
  MMETSP1137-20121227|5679_1 115 IPNSYTEQQVYDLASPYGTVTFVQIATHRDTgasrgyAFVSYDTVEAAENAIA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------NMNNMTVEGRQLR 180
                 45555555555555555555555555443311112225555555555555544..........................................................................................................................................................................................................................................................................................................3333333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (317 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       147  (0.0358362); expected 82.0 (0.02)
Passed bias filter:                      114  (0.0277913); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         8  (0.00195027); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.33u 0.17s 00:00:00.50 Elapsed: 00:00:00.53
# Mc/sec: 789.44
//
Query:       MMETSP1137-20121227|5680_1  [L=277]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (277 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        44  (0.0107265); expected 82.0 (0.02)
Passed bias filter:                       44  (0.0107265); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.16s 00:00:00.37 Elapsed: 00:00:00.33
# Mc/sec: 1107.91
//
Query:       MMETSP1137-20121227|5681_1  [L=169]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.035   12.2   0.0       0.68    8.0   0.0    2.3  2  TIGR02116 toxin_Txe_YoeB: addiction module toxin, Txe/YoeB family


Domain annotation for each model (and alignments):
>> TIGR02116  toxin_Txe_YoeB: addiction module toxin, Txe/YoeB family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   0.0   0.00017      0.68       4      43 ..      62     101 ..      60     109 .. 0.90
   2 ?    1.8   0.0     0.015        62      13      43 ..     110     140 ..     104     149 .. 0.82

  Alignments for each domain:
  == domain 1    score: 8.0 bits;  conditional E-value: 0.00017
   TIGR02116   4 eaweDlkkwkeadkklkkkineLikevkrdPfkgkgkpEp 43 
                 e+ +Dl+   e+++ ++k++  L++e  + Pf+++   E 
  MMETSP1137-20121227|5681_1  62 EVTKDLEATGETYEVVLKRLLTLLAEFPNPPFTTQRLCEL 101
                 6789*****************************9877665 PP

  == domain 2    score: 1.8 bits;  conditional E-value: 0.015
   TIGR02116  13 keadkklkkkineLikevkrdPfkgkgkpEp 43 
                 +++ +kl++ +++L+ + ++ P   + +p p
  MMETSP1137-20121227|5681_1 110 ASSTRKLMNALEKLLTVSSTVPIMSIAPPKP 140
                 567899************9999999988877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (169 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        89  (0.0216967); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.18u 0.19s 00:00:00.37 Elapsed: 00:00:00.31
# Mc/sec: 719.55
//
Query:       MMETSP1137-20121227|5682_1  [L=197]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (197 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       183  (0.0446124); expected 82.0 (0.02)
Passed bias filter:                      152  (0.0370551); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.13s 00:00:00.33 Elapsed: 00:00:00.43
# Mc/sec: 604.69
//
Query:       MMETSP1137-20121227|5683_1  [L=428]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.016   11.7   0.0      0.026   11.1   0.0    1.3  1  TIGR01326 OAH_OAS_sulfhy: O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase


Domain annotation for each model (and alignments):
>> TIGR01326  OAH_OAS_sulfhy: O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   6.4e-06     0.026     129     194 ..     160     224 ..     133     242 .. 0.82

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 6.4e-06
   TIGR01326 129 kddleelekaidentkavfletignPkldvlDiekvaevakkagvplivD.ntvatpylvrPlehGa 194
                  d++  l+++id+   av+le  g P+  v ++e++ e akk+gvp+ +  n   tpy+ + le  +
  MMETSP1137-20121227|5683_1 160 ADNPRLLKEVIDKGVSAVYLEKPGAPT--VSELEEMREYAKKKGVPVYMGyNKNVTPYVRKALEVAM 224
                 5778889******************96..789**************977438888999988887655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (428 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       172  (0.0419308); expected 82.0 (0.02)
Passed bias filter:                      153  (0.0372989); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.15s 00:00:00.48 Elapsed: 00:00:00.56
# Mc/sec: 1008.77
//
Query:       MMETSP1137-20121227|5684_1  [L=134]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (134 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        73  (0.0177962); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.16s 00:00:00.34 Elapsed: 00:00:00.25
# Mc/sec: 707.46
//
Query:       MMETSP1137-20121227|5685_1  [L=325]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (325 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        73  (0.0177962); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.14s 00:00:00.38 Elapsed: 00:00:00.37
# Mc/sec: 1159.36
//
Query:       MMETSP1137-20121227|5686_1  [L=636]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   3.7e-242  802.4   6.7   4.3e-242  802.2   4.7    1.0  1  TIGR02347 chap_CCT_zeta: T-complex protein 1, zeta subunit
   2.1e-129  430.5   8.3   2.6e-129  430.2   5.8    1.0  1  TIGR02339 thermosome_arch: thermosome, various subunits, archaeal
    6.5e-95  316.4   5.9    8.8e-95  316.0   4.1    1.0  1  TIGR02344 chap_CCT_gamma: T-complex protein 1, gamma subunit
      1e-91  305.7   3.2    1.3e-91  305.3   2.2    1.0  1  TIGR02345 chap_CCT_eta: T-complex protein 1, eta subunit
    9.3e-90  299.6   5.7    1.2e-89  299.3   4.0    1.0  1  TIGR02340 chap_CCT_alpha: T-complex protein 1, alpha subunit
    7.6e-81  270.0   4.4    9.3e-81  269.7   3.0    1.0  1  TIGR02342 chap_CCT_delta: T-complex protein 1, delta subunit
    2.4e-78  261.9   5.9      3e-78  261.6   4.1    1.0  1  TIGR02343 chap_CCT_epsi: T-complex protein 1, epsilon subunit
    1.8e-71  239.0   2.8    2.3e-71  238.6   2.0    1.0  1  TIGR02346 chap_CCT_theta: T-complex protein 1, theta subunit
    2.9e-70  235.2   6.5    3.4e-70  235.0   4.5    1.0  1  TIGR02341 chap_CCT_beta: T-complex protein 1, beta subunit
    2.1e-26   90.3   7.4    3.4e-14   50.0   1.5    2.2  2  TIGR02348 GroEL: chaperonin GroL


Domain annotation for each model (and alignments):
>> TIGR02347  chap_CCT_zeta: T-complex protein 1, zeta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  802.2   4.7  1.1e-244  4.3e-242       2     531 .]       5     531 ..       4     531 .. 0.99

  Alignments for each domain:
  == domain 1    score: 802.2 bits;  conditional E-value: 1.1e-244
   TIGR02347   2 vkllnkkaevlrkdaalkvnlnaakglqdvlktnlGPkGtlkmlvsgaGdikltkdGnvllkelqiqhPtasliaraaaaqdditGdGttstviligellkqaerlieeglhPrilteGleiakkealefleklkikkeeevdrelllevartslrtkleaeladklteivvdavlaikkdeeeidlfmveilemkhklevdtklirGlvldhGarhPdmkrkvknvyiltlnvsleyektevnsgfvyssaeereklveaerkfvddrvkkiielkkkvvekkadkgfvvinqkGidplsldllakegilalrrakrrnlerltlacGGealnsvedltpeslGyaGlvyetvigeekytfieevknPksvtilikgpndhtlkqikdavrdGlravknaiedkcvvaGagafeiallkklkeekksvkGkaklgveafaeallviPkvlvensGydvqevlvkledeadearevvgvdletgesivaelkgiwdnysvkkqllssatviasqlllvdevlraGksklk 531
                  +++n++a+vl++ +a  +n+naa+glqdvlk+nlGPkGtlkmlv+g+GdikltkdGn+ll+e+qiq+Pta +iar+a+aqdditGdGtts+v+++gel+kqaer +++g+hPr++ +G+e+ak+++l +++++k+  ++++dr ll+++a++slrtk++aelad +t+ivvdav++ik++++e+dl+mvei++m+hk  +d +l++GlvldhG rhP+m++k++++ iltln  ley+++ev sgf ys+ae+rek+veaerk+vdd+ k +++lk+k +++   + +vvinqkGidpl+ld+lakegilalrrakrrn+er+ lacGGe++ns+ed+tp++lGya  vye+++gee ytf+e v+nP s+til+kg++ h ++qikdavrdGlrav+na+ d+ +v+Gag +e+++ +kl e+++sv G+aklgv+afa+allviPk+l+en+Gyd q+ l+kl++ + ++  ++g d++tg++++++++giwdn++vk+q+l+sa+vi++qlllvdev+raGk+++k
  MMETSP1137-20121227|5686_1   5 AQVVNPNADVLKSGQAQLMNINAARGLQDVLKSNLGPKGTLKMLVGGSGDIKLTKDGNTLLHEMQIQNPTACMIARIATAQDDITGDGTTSAVLIVGELMKQAERHLSDGVHPRLICDGIELAKTAVLAYIDEIKT-SKDTTDRALLMQIAQASLRTKMHAELADLFTDIVVDAVRVIKREGQELDLHMVEIMHMQHKAGTDSRLVKGLVLDHGGRHPGMPKKLSKCKILTLNYDLEYQRSEVASGFYYSNAEQREKMVEAERKWVDDKTKLVLDLKRKACTNG--ETLVVINQKGIDPLALDMLAKEGILALRRAKRRNMERICLACGGEQVNSIEDMTPDVLGYAEEVYEQTLGEETYTFVEGVSNPFSCTILVKGAHPHVIAQIKDAVRDGLRAVANAMTDGFLVPGAGGIEVMCHAKLIEYRNSVVGRAKLGVQAFADALLVIPKTLAENAGYDGQDSLMKLQESHMAGSAKIGFDINTGDPMDPAEAGIWDNFRVKRQMLDSAAVISAQLLLVDEVIRAGKQMKK 531
                 5899**********************************************************************************************************************************99.6679**********************************************************************************************************************************************9..68***********************************************************************************************************************************************************************************************************************************************987 PP

>> TIGR02339  thermosome_arch: thermosome, various subunits, archaeal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  430.2   5.8  6.3e-132  2.6e-129       7     520 ..      10     525 ..       5     526 .. 0.95

  Alignments for each domain:
  == domain 1    score: 430.2 bits;  conditional E-value: 6.3e-132
   TIGR02339   7 egtqrtkgrdalksniaaakavaeavkstlGPrGlDkmLvdslGdvtitnDGatilkemdiehPaakllvevaktqdeevgDGtttavvlaGeLlekaedLleqdihPtviveGyrkaaekalevideiaekidvedkellkkvaetsltskavaeeakdklaelvveavkqvvekredgkykvdldnikiekkkGgsiedtelveGivvDkevvhegmPkrvenakialldaplevekteidaklkitspdqlkkfldqeeallkemvdkiada....Gan....vvicqkgiDdlaqhylakkGilavrrvkksDieklaratGakivsslkeieesdLGeaelveerkvgedklvfvegaknakavtillrGgtehvvdeleRaleDalkvvksvledgkvvaGgGavevelakrlreyaakieGreqlaveafadaleeiprilaenaGldpidalvelRakhekegnknagvdvftgeiedmlelgvieplkvkeqaiksateaatlilriDdviaa 520
                 ++++  k  +a+ +ni+aa+ +++++ks lGP+G  kmLv ++Gd+ +t DG t+l+em+i++P+a ++  +a +qd+ +gDGtt+av++ GeL+++ae  l +++hP +i +G ++a++  l  idei ++ d++d+ ll ++a++sl +k+ a e +d+ +++vv+av +v++++  g  ++dl+ ++i + + ++ +d++lv+G+v+D    h+gmPk++++ ki+ l+  le +++e+   +  ++ +q +k++++e + + ++ + + d      +n    vvi qkgiD la   lak+Gila+rr+k+ ++e++  a+G++ v+s+++++++ LG+ae v e+++ge++++fveg++n+ + til++G   hv+ ++  a++D l++v+++++dg +v+G+G +ev    +l ey +++ Gr +l v+afadal  ip++laenaG+d  d+l++l + h   g +++g d+ tg+  d +e+g+++  +vk+q ++sa+  ++ +l +D+vi+a
  MMETSP1137-20121227|5686_1  10 PNADVLKSGQAQLMNINAARGLQDVLKSNLGPKGTLKMLVGGSGDIKLTKDGNTLLHEMQIQNPTACMIARIATAQDDITGDGTTSAVLIVGELMKQAERHLSDGVHPRLICDGIELAKTAVLAYIDEIKTSKDTTDRALLMQIAQASLRTKMHA-ELADLFTDIVVDAV-RVIKRE--G-QELDLHMVEIMHMQHKAGTDSRLVKGLVLDHGGRHPGMPKKLSKCKILTLNYDLEYQRSEVASGFYYSNAEQREKMVEAERKWVDDKTKLVLDLkrkaCTNgetlVVINQKGIDPLALDMLAKEGILALRRAKRRNMERICLACGGEQVNSIEDMTPDVLGYAEEVYEQTLGEETYTFVEGVSNPFSCTILVKGAHPHVIAQIKDAVRDGLRAVANAMTDGFLVPGAGGIEVMCHAKLIEYRNSVVGRAKLGVQAFADALLVIPKTLAENAGYDGQDSLMKLQESHMA-GSAKIGFDINTGDPMDPAEAGIWDNFRVKRQMLDSAAVISAQLLLVDEVIRA 525
                 5666667789************************************************************************************************************************************************6.889***********.666665..2.479************************************************************************99999999988877654431111222333589************************************************************************************************************************************************************************************6.9*************************************************98 PP

>> TIGR02344  chap_CCT_gamma: T-complex protein 1, gamma subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  316.0   4.1   2.1e-97   8.8e-95       4     522 ..       7     525 ..       5     530 .. 0.93

  Alignments for each domain:
  == domain 1    score: 316.0 bits;  conditional E-value: 2.1e-97
   TIGR02344   4 vlnqntkresGrkaqlsniqaakavadiirttlGpkamlkmlldplGgivltndGnailreidvahpaakslielsrtqdeevGdGttsviilaGellaaaepfleknihptvivraykkaledalkvleelsipvdvedeakllklvkssigtkfvsrwsdlvvdlaldavktvkleerngrklevdikryakvekipGGeiedsavlkGvllnkdvthpkmrrkienprivlldcpleykkgesqtnveilkeedwnrllqleeeevkklceeiiavkpd........lvitekGvsdlaqhyllkanisairrvrktdnnriarvsGativnrveelkesdvGtgaGlfevkkiGdeyftflteckdpkactillrGaskdvlnevernlqdalavarnvllepklvpGGGatelavsvklkkkakklegveqlpyeavadaleviprtlvqncGvnvirtltelrakhaqeekkalGidGetGkivdmkekgiweplavklqtiktaiesavlllriddivsG 522
                 v+n n++  +  +aql ni+aa+ + d++++ lGpk  lkml+   G i lt dGn++l e++++ p+a  +  ++ +qd+  GdGtts +++ Gel+++ae  l+  +hp +i+ + + a + +l  ++e+  + d  d+a l+++ ++s+ tk+ ++ +dl +d+ +dav+++k+e    ++l++ +   ++++   G   +ds+++kG++l+    hp m +k+   +i+ l+  ley+++e  +    ++ e+ +++++ e++ v+   + ++++k +        +vi +kG+  la   l+k++i a+rr ++ + +ri  ++G + vn +e+++ + +G    ++e + +G+e +tf++   +p +ctil++Ga   v+ +++  ++d+l+ + n + ++ lvpG G +e+   +kl +  +++ g ++l ++a adal vip+tl++n+G +   +l +l+  h ++ ++++G d +tG+ +d  e+giw+++ vk q++ +a   ++ ll +d+++  
  MMETSP1137-20121227|5686_1   7 VVNPNADVLKSGQAQLMNINAARGLQDVLKSNLGPKGTLKMLVGGSGDIKLTKDGNTLLHEMQIQNPTACMIARIATAQDDITGDGTTSAVLIVGELMKQAERHLSDGVHPRLICDGIELAKTAVLAYIDEIKTSKDTTDRALLMQIAQASLRTKMHAELADLFTDIVVDAVRVIKREG---QELDLHMVEIMHMQHKAG---TDSRLVKGLVLDHGGRHPGMPKKLSKCKILTLNYDLEYQRSEVASGFYYSNAEQREKMVEAERKWVDDKTKLVLDLKRKactngetlVVINQKGIDPLALDMLAKEGILALRRAKRRNMERICLACGGEQVNSIEDMTPDVLGYAEEVYE-QTLGEETYTFVEGVSNPFSCTILVKGAHPHVIAQIKDAVRDGLRAVANAMTDGFLVPGAGGIEVMCHAKLIEYRNSVVGRAKLGVQAFADALLVIPKTLAENAGYDGQDSLMKLQESHMAG-SAKIGFDINTGDPMDPAEAGIWDNFRVKRQMLDSAAVISAQLLLVDEVIRA 525
                 5666777777789******************************************************************************************************************************************************************9988...445555555555555444...79*****************************************************************9999999887432334445489*************************************************999999888888.78*********************************************************************************************************************99.699*****************************9875555555668988754 PP

>> TIGR02345  chap_CCT_eta: T-complex protein 1, eta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  305.3   2.2   3.2e-94   1.3e-91      14     521 ..      16     526 ..       7     528 .. 0.93

  Alignments for each domain:
  == domain 1    score: 305.3 bits;  conditional E-value: 3.2e-94
   TIGR02345  14 sqGkgqlisninacvaiaeilkttlGPrGmdklivskek.avvsndGatilklldivhPaakllvdiaksqdsevGdGttsvvvlagellkeakplieeglhpqliiralrealklaieklkeiaveldeeksekrevleklaatalsskliaeekeffskmvvdavlsldkddldkk..liGvkkvkGGaledsvlvkGvafkktfsyaGfeqqPkkfanPkilllnvelelkaek.......dnaeirvedvedykeivdaewkiileklekivesG.anvvlsklsiGdlatqyfadrdifcaGrvsdedlkrvvkatGasilsavsdleadvlGkcalfeekqiGserynlftggekakactlilrGgaeqfleeaerslhdaimivrralkakkivaGGGaielelskllrekskkidgkqqliieavakaleviPrslaenaGfdsieilnklrkkhakkgekwaGvdieteeildaleafvwePllvkknalkaateaaatilsvdetikak 521
                 + G++ql+ nina++ ++++lk+ lGP+G  k++v+ +    ++ dG t+l++++i  P+a ++  ia +qd+  GdGtts v++ gel+k+a   + +g+hp+li+ +++ a++++++ ++ei+ + d   +  r +l ++a+++l++k+ ae ++ f+ +vvdav+ ++++ ++ +  ++ + +++  a +ds lvkG+ +++   + G    Pkk++  kil+ln +le++  +        nae r + ve  ++ vd   k++l+  +k  + G + vv+ ++ i  la   +a+  i++  r +  +++r+  a+G+  + +++d++ dvlG  +   e+ +G+e y + +g+ +  +ct++++G+  +++++++ +++d +  v  a+ +  +v+G G ie+   + l e+ + + g+++l ++a+a+al viP++laenaG+d  + l kl++ h   g++  G di+t + +d  ea +w+   vk+ +l++a+  +a +l vde i+a 
  MMETSP1137-20121227|5686_1  16 KSGQAQLM-NINAARGLQDVLKSNLGPKGTLKMLVGGSGdIKLTKDGNTLLHEMQIQNPTACMIARIATAQDDITGDGTTSAVLIVGELMKQAERHLSDGVHPRLICDGIELAKTAVLAYIDEIKTSKD---TTDRALLMQIAQASLRTKMHAELADLFTDIVVDAVRVIKREGQELDlhMVEIMHMQHKAGTDSRLVKGLVLDHGGRHPG---MPKKLSKCKILTLNYDLEYQRSEvasgfyySNAEQREKMVEAERKWVDDKTKLVLDLKRKACTNGeTLVVINQKGIDPLALDMLAKEGILALRRAKRRNMERICLACGGEQVNSIEDMTPDVLGYAEEVYEQTLGEETYTFVEGVSNPFSCTILVKGAHPHVIAQIKDAVRDGLRAVANAMTDGFLVPGAGGIEVMCHAKLIEYRNSVVGRAKLGVQAFADALLVIPKTLAENAGYDGQDSLMKLQESHMA-GSAKIGFDINTGDPMDPAEAGIWDNFRVKRQMLDSAAVISAQLLLVDEVIRAG 526
                 46888875.9********************999998877588*********************************************************************************998766...6779*********************************99986554433999********************99877766...7******************865423333336888888888888888888888888866665555515688999*********************************************************************************************************************************************************************************9.99***********************************************9875 PP

>> TIGR02340  chap_CCT_alpha: T-complex protein 1, alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  299.3   4.0   2.9e-92   1.2e-89      14     534 ..      21     530 ..      12     532 .. 0.94

  Alignments for each domain:
  == domain 1    score: 299.3 bits;  conditional E-value: 2.9e-92
   TIGR02340  14 rkqnvlavvavanivktslGPvGldkmlvddvGdvtitndGatilkklevehPaakvlvelaqlqdkevGdGttsvvilaaellkradelvkrkvhPtsvisGyrlalkeavkyikeklavsveelgkealinvaktslsskiislesdlfsnlvvdavlavkvtnekgetkyPikavnilkahGksaresllvkGyalnctvasqqmpkrvkkakialldfnlqkaklklgvqivvedpeklekirkreadivkerikkilk....aGan....vvlttkGiddlalkylveagvmavrrvkkedlkriakatGatlvssladleGeetleasllGeaeevveeriaddelilikgtkkkksasiilrGandvlldemerslhdalcvvkrtleskkvvaGgGaveaalsiyleelattlgsreqlaiaefaealliiPkvlavnaakdstelvaklralhaaaqlkeekkklkflGldlsngkirdnveaGvlePavskvkslkfateaaitilriddliklkpeee 534
                 +  n+ a+  +++++k+ lGP G  kmlv   Gd+ +t dG t+l+++++++P+a ++  +a+ qd   GdGtts v++  el+k+a+  +++ vhP  + +G  la    + yi+e +++s ++  ++ l+ +a++sl +k+ +  +dlf+++vvdav  +k + +    +  ++ v+i+  + k+ ++s lvkG +l+       mpk+++k ki+ l+++l+ ++ +++     +++e+ ek+ + e + v ++ k +l+    a +n    vv+  kGid lal +l   g++a+rr k++++ ri  a G++ v s+ d+       + +lG aeev+e+ ++++   +++g ++  s++i+++Ga  +++ +++ ++ d l +v  ++  + +v+G+G +e+    +l e+ +++  r +l +++fa+all+iPk+la na+ d ++ + kl+ +h a            +G+d+++g  +d  eaG+ +    k ++l +a   +  +l +d++i+  ++ +
  MMETSP1137-20121227|5686_1  21 QLMNINAARGLQDVLKSNLGPKGTLKMLVGGSGDIKLTKDGNTLLHEMQIQNPTACMIARIATAQDDITGDGTTSAVLIVGELMKQAERHLSDGVHPRLICDGIELAKTAVLAYIDE-IKTSKDTTDRALLMQIAQASLRTKMHAELADLFTDIVVDAVRVIKREGQ----ELDLHMVEIMHMQHKAGTDSRLVKGLVLDHGGRHPGMPKKLSKCKILTLNYDLEYQRSEVASGFYYSNAEQREKMVEAERKWVDDKTKLVLDlkrkACTNgetlVVINQKGIDPLALDMLAKEGILALRRAKRRNMERICLACGGEQVNSIEDM------TPDVLGYAEEVYEQTLGEETYTFVEGVSNPFSCTILVKGAHPHVIAQIKDAVRDGLRAVANAMTDGFLVPGAGGIEVMCHAKLIEYRNSVVGRAKLGVQAFADALLVIPKTLAENAGYDGQDSLMKLQESHMAGS--------AKIGFDINTGDPMDPAEAGIWDNFRVKRQMLDSAAVISAQLLLVDEVIRAGKQMK 530
                 5679***************************************************************************************************************75.899*****************************************98875....456889*****************************************************************************999999986333333333345999*******************************************9887......5678***************************************************************************************************************************99887654........458*********************************************9888766 PP

>> TIGR02342  chap_CCT_delta: T-complex protein 1, delta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  269.7   3.0   2.3e-83   9.3e-81       9     515 ..      19     524 ..      12     526 .. 0.95

  Alignments for each domain:
  == domain 1    score: 269.7 bits;  conditional E-value: 2.3e-83
   TIGR02342   9 dvrtsnivaakavadairtslGpkGmdkliqekkGeviitndGatilkqlevlhpaakllvelskaqdieaGdGttsvvvlaGalldaaekllekgihptiisesfqsaadealkilkelsipvdlsdrealiksattslsskvvsqyssllaplavdavlkvidsekdknvdlkdikvvkklGgtiddtelieGvvltqkasksaggptriekakigliqfqlsapktdmenqvvvsdyaqmdrvlkeerkyi...lnlvkkikkaganvlliqksilrdavndlalhflakkkilvvkdiereevefisktlGckpvasidkltadklGkaelveevksddskivkitGvknagktvsvlvrGsnklvideaerslhdalcvirslvkkraliaGGGapeieialklskkarelkGvesyivrafadalevipytlaenaGlnpikvvtelrnrhaqGektaGisvrkggitdileeevlqpllvtksavtlasetvrsilkiddivl 515
                 + +  ni aa+ + d++++ lGpkG  k++  + G++ +t dG+t+l+++++  p+a ++  ++ aqd  +GdGtts v++ G l++ ae+ l+ g+hp +i+++++ a    l  ++e++++ d +dr+ l++ a++sl +k+ ++ ++l++ + vdav  ++   + ++ dl+++ +++    +  d+ l++G+vl++   +  g p+++ k ki  +++ l   ++++ +    s+ +q ++++  erk++    +lv  +k+  +        i +  ++ lal +lak +il ++  +r ++e i+ + G + v si+ +t+d lG+ae v e ++++     + Gv+n+  + ++lv+G+   vi + + ++ d l  +   + +  l++G G  e+    kl ++ +++ G  ++ v+afadal vip tlaenaG +  + + +l++ h  G  + G +++ g   d  e  +   + v++  +  a+     +l +d+++ 
  MMETSP1137-20121227|5686_1  19 QAQLMNINAARGLQDVLKSNLGPKGTLKMLVGGSGDIKLTKDGNTLLHEMQIQNPTACMIARIATAQDDITGDGTTSAVLIVGELMKQAERHLSDGVHPRLICDGIELAKTAVLAYIDEIKTSKDTTDRALLMQIAQASLRTKMHAELADLFTDIVVDAVRVIKR--EGQELDLHMVEIMHMQHKAGTDSRLVKGLVLDHGGRH-PGMPKKLSKCKILTLNYDLEYQRSEVASGFYYSNAEQREKMVEAERKWVddkTKLVLDLKRKACTNGETLVVINQKGIDPLALDMLAKEGILALRRAKRRNMERICLACGGEQVNSIEDMTPDVLGYAEEVYEQTLGEETYTFVEGVSNPF-SCTILVKGAHPHVIAQIKDAVRDGLRAVANAMTDGFLVPGAGGIEVMCHAKLIEYRNSVVGRAKLGVQAFADALLVIPKTLAENAGYDGQDSLMKLQESHMAGSAKIGFDINTGDPMDPAEAGIWDNFRVKRQMLDSAAVISAQLLLVDEVIR 524
                 56678**********************************************************************************************************************************************************977665..68999*******999999999**********998875.9***********************************************9333457777777777655555567788899********************************************************************9986.579**************************************************************************************************************************************************9985 PP

>> TIGR02343  chap_CCT_epsi: T-complex protein 1, epsilon subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  261.6   4.1   7.4e-81     3e-78      23     530 ..      15     524 ..       6     526 .. 0.94

  Alignments for each domain:
  == domain 1    score: 261.6 bits;  conditional E-value: 7.4e-81
   TIGR02343  23 lkGleakksniaaakavasilrtslGpkGldkiliskdgditvtndGatilekmdldeeiakllvelsksqdeeiGdGttgvvvlasalleqaeklldkGihpikiaeGfekaakvavekleeiaeeisvdednketllkaaktslgskivskskrrlaeiavdavlavadlerkdvdfdlikvegkvGgsledtklikGilidkdlshpqmkkevkdakiailtcpfeppkpktkhkldissveeykklekyekekfee...middikksGan.....lvicqwGfddeanhlllqndlpavrwvgGkeleliaiatgGrivprfeelseeklGkaklvreksfGttkdrllvieqskeskavtilvrGgnkliieeakrslhdalcvvrnlikdsrivyGGGaaeiacslaveeeadklsgveqyairafaealeeiplalaensGldpietlsevkakqlkeknpalGvdcleeGtndmkelkvletligkkqqillatqlvkmilkiddvis 530
                 lk  +a+  ni aa+ +  +l++ lGpkG  k+l++  gdi +t dG t+l++m+++++ a ++ +++ +qd+  GdGtt+ v++ + l++qae+ l  G+hp  i++G e a    ++ ++ei    s d+ ++  l++ a++sl +k+  +  + +++i+vdav  v+  e +++d++++++     +   d++l+kG+++d    hp m+k++ ++ki  l   +e  +      +  s++e+ +k+ + e++  ++   ++ d+k+  ++     +vi q G d  a ++l ++++ a+r    +++e i +a gG  v   e+++ + lG a+ v+e+ +G   +   ++e  ++  + tilv+G+   +i + k +++d l +v n ++d  +v G G  e+ c   + e  + + g  +  ++afa+al  ip +laen+G+d  + l ++++  +    +++G d ++    d  e  + + +  k+q +  a+ +   +l +d+vi 
  MMETSP1137-20121227|5686_1  15 LKSGQAQLMNINAARGLQDVLKSNLGPKGTLKMLVGGSGDIKLTKDGNTLLHEMQIQNPTACMIARIATAQDDITGDGTTSAVLIVGELMKQAERHLSDGVHPRLICDGIELAKTAVLAYIDEIKT--SKDTTDRALLMQIAQASLRTKMHAELADLFTDIVVDAV-RVIKREGQELDLHMVEIMHMQHKAGTDSRLVKGLVLDHGGRHPGMPKKLSKCKILTLNYDLEYQRSEVASGFYYSNAEQREKMVEAERKWVDDktkLVLDLKRKACTngetlVVINQKGIDPLALDMLAKEGILALRRAKRRNMERICLACGGEQVNSIEDMTPDVLGYAEEVYEQTLGE--ETYTFVEGVSNPFSCTILVKGAHPHVIAQIKDAVRDGLRAVANAMTDGFLVPGAGGIEVMCHAKLIEYRNSVVGRAKLGVQAFADALLVIPKTLAENAGYDGQDSLMKLQESHMAG-SAKIGFDINTGDPMDPAEAGIWDNFRVKRQMLDSAAVISAQLLLVDEVIR 524
                 677799*************************************************************************************************************99******965..56668999*****************************8.688999*****999988887777889*************************************************************99876522267677764322133347899***************************************************************6..567889*******************************************************************************************************9998876.579*********************************************96 PP

>> TIGR02346  chap_CCT_theta: T-complex protein 1, theta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  238.6   2.0   5.7e-74   2.3e-71      18     519 ..      19     525 ..       5     531 .. 0.93

  Alignments for each domain:
  == domain 1    score: 238.6 bits;  conditional E-value: 5.7e-74
   TIGR02346  18 eavlknieaikelseitrtslGPngmnklvinhleklfvtnDaatilrelevqhPaakllvlaskaqeeelGDgtnlvlvlagelLekaeelirlGlspseiikGyelalkkalevLeelvvlevkdleekeelikalkaslsskqlgn.edilaelvakaiitvlPknsekfnvdnirvvkllGgslsdsevlkGlvlkreae..gsvkrvkdakvavfscpldtattetkGtvLlknaeelldyskgeekkiealikeiad........sgvkvivaggsvsdlalhyvekykilvlkisskfelrrlckvvgatalvrlsapspeelGlvdsvkveeigskkvtvikqeeedskistivLrGstknllddieraidDGvnvvkalvkdsrllpGagateieLakklkkyaeklkgleqyaikkfaeafeiiPrtlaenaGlnanevlskLyaahkkgnkslgidiekesdavkdvkeekiyDllaakkfaiklateaavtvLkvDqiima 519
                 +a l ni+a + l+++++  lGP+g  k+++     + +t+D  t+l+e+++q P+a ++  ++ aq+  +GDgt  ++ + gel+++ae+ ++ G++p  i +G ela  ++l+ ++e+ +   kd++++  l+++ +asl +k  ++ +d+++++v +a+  +  ++ ++ ++  + ++ +   + +ds ++kGlvl++     g  k+ ++ k+  ++  l+ + +e        nae+      +e k ++++ k + d            v++ +  +  lal  + k +il l+   + ++ r+c ++g  ++  ++  +p+ lG+ ++v+ + +g+++ t ++   +     ti+++G+   ++ +i  a+ DG+ +v +++ d+ l+pGag  e+    kl +y +++ g  ++ ++ fa a  +iP+tlaenaG++ ++ l kL  +h  g  ++g di++++    d +e+ i+D++  k+  +  a+     +L vD +i a
  MMETSP1137-20121227|5686_1  19 QAQLMNINAARGLQDVLKSNLGPKGTLKMLVGGSGDIKLTKDGNTLLHEMQIQNPTACMIARIATAQDDITGDGTTSAVLIVGELMKQAERHLSDGVHPRLICDGIELAKTAVLAYIDEIKT--SKDTTDRALLMQIAQASLRTKMHAElADLFTDIVVDAVRVIK-REGQELDLHMVEIMHMQHKAGTDSRLVKGLVLDHGGRhpGMPKKLSKCKILTLNYDLEYQRSEVASGFYYSNAEQREKMVEAERKWVDDKTKLVLDlkrkactnGETLVVINQKGIDPLALDMLAKEGILALRRAKRRNMERICLACGGEQVNSIEDMTPDVLGYAEEVYEQTLGEETYTFVEGVSN-PFSCTILVKGAHPHVIAQIKDAVRDGLRAVANAMTDGFLVPGAGGIEVMCHAKLIEYRNSVVGRAKLGVQAFADALLVIPKTLAENAGYDGQDSLMKLQESHMAGSAKIGFDINTGDP--MDPAEAGIWDNFRVKRQMLDSAAVISAQLLLVDEVIRA 525
                 45578******************************************************************************************************************976..579999***************999989**********97666.55899***************************98653338999********************************************9988877652222111033457888899*******************************************************************99988.5668*****************************************************************************************************************9..7**********************************977 PP

>> TIGR02341  chap_CCT_beta: T-complex protein 1, beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  235.0   4.5   8.2e-73   3.4e-70       2     515 ..       7     526 ..       6     530 .. 0.88

  Alignments for each domain:
  == domain 1    score: 235.0 bits;  conditional E-value: 8.2e-73
   TIGR02341   2 ilkdsaeeeraenarlssfvgaiavgdlvkstlgpkgmdkillsasseasivvtndgatilksialdnpaakvlvdiskvqddevgdgttsvtvlaaellreaeklvnkkihpqtiiegyrlatkaalealkksavdnssdkvkfredllkiarttlsskilsqdkdhfaklavdavlrlkgst...nleaiqiikklggklddsyldegfllekkig.vnqpkrienakiliantaldtdkvkvfgsrvrvdstaklaelekaekekmkekvekil...khni.n....vfinrqliynypeqlfadagvmaiehadfegverlalvtggeivstfdepelvklgscdlieeiligedkllkfsgvklgeactivlrgatqqildeaerslhdalavlsqtvkesrtvlgggcaellmakaveeeaqkvagkkalaveafakalrqlptiladnagfdsaelvaklraahaegnstagldleegeiadlrklgivesyklkravvssaaeaaevllrvdniikaa 515
                 +++ +a+  ++ +a+l  +  a  + d++ks lgpkg  k+l+ +s   +i++t dg t+l+++ ++np+a ++  i+  qdd  gdgtts +++  el+++ae+ +++ +hp+ i +g  la +a l  +    ++ s+d +  r  l++ia+++l +k+ ++  d f+++ vdav  +k  +   +l+ ++i+++     +ds l +g++l++       pk++ + kil  n  l+ ++  v        ++ +  ++ +ae++ + +k + +l   + ++ n    v in++ i     +++a+ g+ a+  a    +er++l  gge v ++++     lg  + + e  +ge+      gv    +cti+++ga   ++ + + ++ d l  +++ + +   v g+g  e++    + e  + v g+  l v+afa al  +p  la+nag+d  + + kl+ +h+ g  ++g+d++ g+  d ++ gi + +++kr+++ saa  + +ll vd++i+a 
  MMETSP1137-20121227|5686_1   7 VVNPNADVLKSGQAQLMNINAARGLQDVLKSNLGPKGTLKMLVGGSG--DIKLTKDGNTLLHEMQIQNPTACMIARIATAQDDITGDGTTSAVLIVGELMKQAERHLSDGVHPRLICDGIELAKTAVLAYID--EIKTSKD-TTDRALLMQIAQASLRTKMHAELADLFTDIVVDAVRVIKREGqelDLHMVEIMHMQHKAGTDSRLVKGLVLDHGGRhPGMPKKLSKCKILTLNYDLEYQRSEVASGFY-YSNAEQREKMVEAERKWVDDKTKLVLdlkRKACtNgetlVVINQKGIDPLALDMLAKEGILALRRAKRRNMERICLACGGEQVNSIEDMTPDVLGYAEEVYEQTLGEETYTFVEGVSNPFSCTILVKGAHPHVIAQIKDAVRDGLRAVANAMTDGFLVPGAGGIEVMCHAKLIEYRNSVVGRAKLGVQAFADALLVIPKTLAENAGYDGQDSLMKLQESHMAGSAKIGFDINTGDPMDPAEAGIWDNFRVKRQMLDSAAVISAQLLLVDEVIRAG 526
                 667777778888999999999*********************99887..9**********************************************************************999877766554..5788888.6779******************************999987762224667778877778889**********975331357********************99976544.334444444555555555444333321102222122233789*******************************************99999999************************************************************************9887778888999***********************************************************************************************96 PP

>> TIGR02348  GroEL: chaperonin GroL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.0   1.5   8.3e-17   3.4e-14      21     184 ..      31     191 ..      17     218 .. 0.80
   2 !   43.1   0.2     1e-14   4.2e-12     387     520 ..     385     523 ..     372     530 .. 0.81

  Alignments for each domain:
  == domain 1    score: 50.0 bits;  conditional E-value: 8.3e-17
   TIGR02348  21 ladavkvtlGPkgrnvvleksfGaPkitkdGvtvakeieledkfenlGaklvkevasktndvaGdGtttatvlaqaivkeGlknvaaGanpielkrGiekavekvveelk..klskevkdkeeiaqvatisanndeeiGeliaeamekvgkdGvitve.eskslete 184
                 l d +k  lGPkg   +l    G  k+tkdG t+ +e++++++     a ++ ++a+  +d++GdGtt a+++   ++k+  ++++ G+ p  +  Gie a ++v++ ++  k+sk+ +d+  + q+a+ s    +++   +a+ +  +  d v  ++ e+++l+ +
  MMETSP1137-20121227|5686_1  31 LQDVLKSNLGPKGTLKMLVGGSGDIKLTKDGNTLLHEMQIQNP----TACMIARIATAQDDITGDGTTSAVLIVGELMKQAERHLSDGVHPRLICDGIELAKTAVLAYIDeiKTSKDTTDRALLMQIAQASLR--TKMHAELADLFTDIVVDAVRVIKrEGQELDLH 191
                 7788999*****************************9988766....6889999***********************************************99999999833468999999999999988766..34555555555555555554442134444333 PP

  == domain 2    score: 43.1 bits;  conditional E-value: 1e-14
   TIGR02348 387 lkekkarvedalnatraaveeG.ivaGGGvallraaeklee.lkeksedekvGveivkraleaPlrqiaenaGkdgavvvekvkek...kdeevGfnaatdeyedlveaGiidpakvtrsalqnaasiagllltteavv 520
                 + + k+ v d l+a   a+ +G +v+G G   + +++kl e  ++     k+Gv+    al    +++aenaG+dg+  + k++e+    ++++Gf+ +t++  d  eaGi d  +v r+ l  aa i++ ll  + v+
  MMETSP1137-20121227|5686_1 385 IAQIKDAVRDGLRAVANAMTDGfLVPGAGGIEVMCHAKLIEyRNSVVGRAKLGVQAFADALLVIPKTLAENAGYDGQDSLMKLQEShmaGSAKIGFDINTGDPMDPAEAGIWDNFRVKRQMLDSAAVISAQLLLVDEVI 523
                 5567999***************4589966666666666655266667799*************99***********99888888772224679**********************************977655554444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (636 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       177  (0.0431497); expected 82.0 (0.02)
Passed bias filter:                      109  (0.0265724); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                        10  (0.00243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.64u 0.18s 00:00:00.82 Elapsed: 00:00:00.68
# Mc/sec: 1234.49
//
Query:       MMETSP1137-20121227|5687_1  [L=224]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      0.006   13.2   0.1     0.0082   12.8   0.1    1.2  1  TIGR03405 Phn_Fe-ADH: phosphonate metabolism-associated iron-containing alcohol dehydrogenase


Domain annotation for each model (and alignments):
>> TIGR03405  Phn_Fe-ADH: phosphonate metabolism-associated iron-containing alcohol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.8   0.1     2e-06    0.0082      60     116 ..     147     201 ..     125     222 .. 0.80

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 2e-06
   TIGR03405  60 pnPdvaqlaeladrlaededaidvvvalGGGsvidtakvlavelrrgefeellrlle 116
                 +  d + la++++ +a +  +  v+va+G Gs+  + k++a+  r+   ee + +l 
  MMETSP1137-20121227|5687_1 147 SSTDARVLAGAISSFAREG-RRMVIVAIGAGSINQAVKAIAIA-RKNVEEEAIDILC 201
                 5568899999999998876.6679******************9.7666677777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (224 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       176  (0.0429059); expected 82.0 (0.02)
Passed bias filter:                      120  (0.029254); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.22u 0.18s 00:00:00.40 Elapsed: 00:00:00.53
# Mc/sec: 557.84
//
Query:       MMETSP1137-20121227|5688_1  [L=544]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (544 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       185  (0.0451); expected 82.0 (0.02)
Passed bias filter:                      118  (0.0287665); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.15s 00:00:00.54 Elapsed: 00:00:00.49
# Mc/sec: 1465.35
//
Query:       MMETSP1137-20121227|5689_1  [L=457]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (457 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       127  (0.0309605); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.13s 00:00:00.44 Elapsed: 00:00:00.43
# Mc/sec: 1402.77
//
Query:       MMETSP1137-20121227|5690_1  [L=349]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        1.1    5.3  16.4        1.7    4.6  11.4    1.3  1  TIGR00593 pola: DNA polymerase I


Domain annotation for each model (and alignments):
>> TIGR00593  pola: DNA polymerase I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6  11.4   0.00042       1.7     288     440 ..      12     164 ..       2     218 .. 0.60

  Alignments for each domain:
  == domain 1    score: 4.6 bits;  conditional E-value: 0.00042
   TIGR00593 288 seaedka...eeeeeekelvakeeeekaeleevaekaekdalvleklleklkkakalaialeeasevakvseadglleteekdaklaev.leketikkaleadakalaklLkakgielllvvedtmlaaylldpeetskelatlakkylkeelald.e 440
                 +eae+ka   +ee+ ++e +  +eee++e+e+ +e++   +   ++ +++ +ka+a+a+ ++ +++v+++++++  +++++ + + +++   +  + + ++a++ a+++lL+a++++ l +    +l a+++d++++ +  +++++k+ +e+ + d +
  MMETSP1137-20121227|5690_1  12 AEAEEKAkaeAEEKAKAEAEGNKEEEESETESEKESE---KESGKESEKESEKANATAANVTRTKTVKVTKQQKR-MHYATLKVSETSMsAVSPLNATHIDAAVAANKALLEAEALRRLNAEAKNKLEAFIIDTRDKIS-SEEIFEKVSTETERDDlR 164
                 2222222211344444444444444444444333333...34456666666666666666666556665555544.45555444444330334556666789999999***********999************99995.666666665544333332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (349 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       455  (0.110922); expected 82.0 (0.02)
Passed bias filter:                      115  (0.0280351); expected 82.0 (0.02)
Passed Vit filter:                        31  (0.00755729); expected 4.1 (0.001)
Passed Fwd filter:                        13  (0.00316919); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.16s 00:00:00.70 Elapsed: 00:00:00.50
# Mc/sec: 921.28
//
Query:       MMETSP1137-20121227|5691_1  [L=227]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.8e-17   61.5   0.0      3e-17   60.8   0.0    1.3  1  TIGR01351 adk: adenylate kinases
    0.00019   19.0   0.0     0.0025   15.3   0.0    2.0  2  TIGR01360 aden_kin_iso1: adenylate kinase


Domain annotation for each model (and alignments):
>> TIGR01351  adk: adenylate kinases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.8   0.0   1.5e-20     3e-17       5     188 ..       7     199 ..       4     224 .. 0.82

  Alignments for each domain:
  == domain 1    score: 60.8 bits;  conditional E-value: 1.5e-20
   TIGR01351   5 lGpPGsGKGTqakrlaeklglvhistGdllRaevkkktelgkkakeyle..kGklvpdeiviklvkerleeeede..ekgfiLDGfPRtleQaeaLdelleelglkldavielkvpdevlverisgRricpkcgk.vynlkfkkpkv..........ecddctaellkqReDDteevvkkRlevYkeqteplieyYkkk 188
                 +GpP+s     a+ la++l ++ +s   l  +e++++t+lg ++++ ++  +G+++p  +v  l+ + +++ +++  + g+++ G PRt eQ ++L ++      +  ++++l++++    +r+s R +c++c+   y  + +   v          ecd c     ++   D ++v ++R++ Y+e+t+pl+   +++
  MMETSP1137-20121227|5691_1   7 IGPPASEPKLLATLLAKQLRVPMVSINALAATEIRHRTHLGIQLSAAMQdsRGEMLPMRLVAPLLLQGIQAARQStqSAGVVIAGAPRTREQYQLLVNAG-----HPVQILHLELNNARQQHRLSCRHVCEACSLpLYTPEPDSDAVapsnsleplvECD-CDRPAATRHPADAPDVARRRVQLYEEHTRPLVAQLAQR 199
                 8***********************************************7447*****************9876655588*****************9863.....4889************************852565544332223444677775666.66667776889*******************99876554 PP

>> TIGR01360  aden_kin_iso1: adenylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   1.2e-06    0.0025      32     115 ..      30     116 ..       2     134 .. 0.75
   2 ?    1.7   0.0     0.019        39     125     160 ..     162     197 ..     148     208 .. 0.77

  Alignments for each domain:
  == domain 1    score: 15.3 bits;  conditional E-value: 1.2e-06
   TIGR01360  32 lssGdllreevasgsergkklqaime..kGelvpldvvldllkeallkalek..skGflidGyprevkqGeefekriaeaklvlyldv 115
                 +s   l   e+   ++ g +l a m+  +Ge++p+  v  ll + + +a ++  s G +i G pr  +q + + +  +++  +l+l+ 
  MMETSP1137-20121227|5691_1  30 VSINALAATEIRHRTHLGIQLSAAMQdsRGEMLPMRLVAPLLLQGIQAARQStqSAGVVIAGAPRTREQYQLLVN-AGHPVQILHLEL 116
                 56667778899999999********6448****************99887764589**********999765443.344444555555 PP

  == domain 2    score: 1.7 bits;  conditional E-value: 0.019
   TIGR01360 125 lkraetsarvddnektikkrletykkatepvieyye 160
                  +r +++ +  d+ +  ++r++ y + t p+++   
  MMETSP1137-20121227|5691_1 162 CDRPAATRHPADAPDVARRRVQLYEEHTRPLVAQLA 197
                 5677777778899999**************997654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (227 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       102  (0.0248659); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.22u 0.18s 00:00:00.40 Elapsed: 00:00:00.44
# Mc/sec: 680.94
//
Query:       MMETSP1137-20121227|5692_1  [L=625]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (625 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        92  (0.0224281); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.15s 00:00:00.53 Elapsed: 00:00:00.60
# Mc/sec: 1374.89
//
Query:       MMETSP1137-20121227|5693_1  [L=551]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      1e-13   48.3   1.3      4e-10   36.4   0.0    2.2  2  TIGR03817 DECH_helic: helicase/secretion neighborhood putative DEAH-box helicase
      1e-10   37.8   0.1      1e-10   37.8   0.1    1.9  2  TIGR04121 DEXH_lig_assoc: DEXH box helicase, DNA ligase-associated
    3.3e-05   20.1   0.0    4.7e-05   19.6   0.0    1.1  1  TIGR01407 dinG_rel: putative DnaQ family exonuclease/DinG family helicase
    0.00032   16.2   0.0    0.00046   15.7   0.0    1.1  1  TIGR01054 rgy: reverse gyrase
    0.00037   16.9   0.0      0.066    9.4   0.0    2.2  2  TIGR01389 recQ: ATP-dependent DNA helicase RecQ
     0.0014   15.3   0.0       0.48    7.0   0.0    2.3  2  TIGR00614 recQ_fam: ATP-dependent DNA helicase, RecQ family
     0.0054   13.6   0.0     0.0085   12.9   0.0    1.2  1  TIGR04095 dnd_restrict_1: DNA phosphorothioation system restriction enzyme
     0.0088   12.4   0.0      0.015   11.6   0.0    1.3  1  TIGR03117 cas_csf4: CRISPR type AFERR-associated DEAD/DEAH-box helicase Csf4


Domain annotation for each model (and alignments):
>> TIGR03817  DECH_helic: helicase/secretion neighborhood putative DEAH-box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.4   0.0   7.7e-13     4e-10      28     105 ..       3      80 ..       1     123 [. 0.85
   2 !   10.7   0.2   4.7e-05     0.024     333     384 ..     452     504 ..     444     508 .. 0.82

  Alignments for each domain:
  == domain 1    score: 36.4 bits;  conditional E-value: 7.7e-13
   TIGR03817  28 aleaaGieapwqhqaraaelahaGehvvvatgtasGkslayllPvlsalaedpratalylaPtkalaadqlravkele 105
                 al +aG+++p q q +a    ++Geh+v+   t sGk+layllP+l +l+ ++  + l + P + la    +av+   
  MMETSP1137-20121227|5693_1   3 ALXEAGLTRPTQIQKAAMASIRKGEHAVINSPTGSGKTLAYLLPLLPRLHVSRPMQLLIVVPSRELAVQTAAAVERYW 80 
                 78899***********999*************************************************9999998654 PP

  == domain 2    score: 10.7 bits;  conditional E-value: 4.7e-05
   TIGR03817 333 vaatnalelGvdisGldavviaGfPGtvaslwqqaGraGrrgqda.lvvlvar 384
                 +++t     G+d++ +d v++   PG   +++  aGr+Gr g+   +v ++a+
  MMETSP1137-20121227|5693_1 452 LVSTVGSARGLDLGVVDCVLLWSLPGSADAYMHLAGRTGRCGRPGrVVSILAS 504
                 56666677899*******************************96514445565 PP

>> TIGR04121  DEXH_lig_assoc: DEXH box helicase, DNA ligase-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.8   0.1     2e-13     1e-10      14     125 ..      12     120 ..       6     168 .. 0.89
   2 ?   -1.7   0.2      0.18        94     304     352 ..     450     497 ..     446     504 .. 0.74

  Alignments for each domain:
  == domain 1    score: 37.8 bits;  conditional E-value: 2e-13
   TIGR04121  14 prafQkevleaaeegesglliapTGaGKTlavflpslielaakekpkkglkvlyitPLkaLakdieraleapieelgleirvelrtGDtssserarq.rkkppdiLltTpEsl 125
                 p++ Qk++++++++ge+++++ pTG+GKTla  lp l +l+     ++++++l + P + La++++ a+e+   + g++    l + D +s+e ++   k+   +L+ Tp  l
  MMETSP1137-20121227|5693_1  12 PTQIQKAAMASIRKGEHAVINSPTGSGKTLAYLLPLLPRLH----VSRPMQLLIVVPSRELAVQTAAAVERYWPHHGTQRAFLLTSADMPSEELEEAvIKAACPVLVATPRPL 120
                 7889************************************9....77899****************************99999999999999876651577788999999766 PP

  == domain 2    score: -1.7 bits;  conditional E-value: 0.18
   TIGR04121 304 ravvcTssLdLGvDfgdvdlviqvGspkgvaRllQRiGRsnHrldepsk 352
                 r++v+T     G+D g vd+v+    p ++   +  +GR++ r ++p +
  MMETSP1137-20121227|5693_1 450 RVLVSTVGSARGLDLGVVDCVLLWSLPGSADAYMHLAGRTG-RCGRPGR 497
                 778899888999**********9877777777777777765.4444444 PP

>> TIGR01407  dinG_rel: putative DnaQ family exonuclease/DinG family helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.0   9.1e-08   4.7e-05     259     303 ..      21      67 ..       9      82 .. 0.75

  Alignments for each domain:
  == domain 1    score: 19.6 bits;  conditional E-value: 9.1e-08
   TIGR01407 259 delteeekslIeAatGtGKtlgYLLpalylak..eekpvviStatkv 303
                   + + e+++I+ +tG+GKtl+YLLp+l   +     +++i ++++ 
  MMETSP1137-20121227|5693_1  21 ASIRKGEHAVINSPTGSGKTLAYLLPLLPRLHvsRPMQLLIVVPSRE 67 
                 5567789*******************997766333445566666655 PP

>> TIGR01054  rgy: reverse gyrase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   8.9e-07   0.00046      79     192 ..      10     122 ..       4     131 .. 0.79

  Alignments for each domain:
  == domain 1    score: 15.7 bits;  conditional E-value: 8.9e-07
   TIGR01054  79 sellsiqkmWakrvlknksFaivaPtGvGkttfglv..mslflakkgkrvyiilPttlLvkqvaeklsslaekeglnirvvayhsklstkekkevkeriengdfdilittsaflsk 192
                 +++  iqk     + k++   i  PtG Gkt   l+  +      + ++ +i++P + L+ q+a+ ++++  ++g+++ ++   + ++ +e   + e + +    +l++t   l +
  MMETSP1137-20121227|5693_1  10 TRPTQIQKAAMASIRKGEHAVINSPTGSGKTLAYLLplLPRLHVSRPMQLLIVVPSRELAVQTAAAVERYWPHHGTQRAFLLTSADMPSEE---LEEAVIKAACPVLVATPRPLLR 122
                 57889999999999999999999*******975443113444455599***************************9998887788887755...5566667777888888765555 PP

>> TIGR01389  recQ: ATP-dependent DNA helicase RecQ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.1   0.0    0.0026       1.3      17      51 ..      15      49 ..       8      63 .. 0.86
   2 !    9.4   0.0   0.00013     0.066     276     331 ..     450     505 ..     444     537 .. 0.86

  Alignments for each domain:
  == domain 1    score: 5.1 bits;  conditional E-value: 0.0026
   TIGR01389 17 gqeeiieevldgrdvlavlPtGGGkslCYqvPaLl 51
                 q++ + ++ +g++++   PtG Gk l Y +P L 
  MMETSP1137-20121227|5693_1 15 IQKAAMASIRKGEHAVINSPTGSGKTLAYLLPLLP 49
                57888999999****99***************875 PP

  == domain 2    score: 9.4 bits;  conditional E-value: 0.00013
   TIGR01389 276 kvvvatvaFGmGidksdvRfvihldlPknlesyyqeaGRaGRDGlkaeaillysea 331
                 +v+v+tv    G+d   v  v+   lP++ ++y   aGR GR G++   + + +++
  MMETSP1137-20121227|5693_1 450 RVLVSTVGSARGLDLGVVDCVLLWSLPGSADAYMHLAGRTGRCGRPGRVVSILASE 505
                 699******************************************99887766655 PP

>> TIGR00614  recQ_fam: ATP-dependent DNA helicase, RecQ family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.0   0.0   0.00093      0.48      14      48 ..      14      48 ..       6      72 .. 0.84
   2 !    5.9   0.0    0.0019      0.97     278     327 ..     450     499 ..     446     533 .. 0.90

  Alignments for each domain:
  == domain 1    score: 7.0 bits;  conditional E-value: 0.00093
   TIGR00614 14 pvqlevinavlegrdalvvmatGgGksLCyqlpav 48
                + q  ++ ++ +g+ a++  +tG Gk L y lp +
  MMETSP1137-20121227|5693_1 14 QIQKAAMASIRKGEHAVINSPTGSGKTLAYLLPLL 48
                567788999999******************99965 PP

  == domain 2    score: 5.9 bits;  conditional E-value: 0.0019
   TIGR00614 278 qvvvatvafGmGinkpdvRfvihyslpksiesYYqesGRaGRDglksecv 327
                 +v+v+tv    G++   v  v+ +slp s ++Y   +GR GR g + + v
  MMETSP1137-20121227|5693_1 450 RVLVSTVGSARGLDLGVVDCVLLWSLPGSADAYMHLAGRTGRCGRPGRVV 499
                 5899**************************************99887766 PP

>> TIGR04095  dnd_restrict_1: DNA phosphorothioation system restriction enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.9   0.0   1.7e-05    0.0085      16      76 ..      18      78 ..       9      84 .. 0.84

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 1.7e-05
   TIGR04095 16 aikaWfknngrGilkmatGtGktltaLalvsklaekikslvvvvvvPykhLveqWakeaek 76
                a  a ++++ + +++  tG+Gktl  L       + ++++ +++vvP ++L+ q a+ +e+
  MMETSP1137-20121227|5693_1 18 AAMASIRKGEHAVINSPTGSGKTLAYLLPLLPRLHVSRPMQLLIVVPSRELAVQTAAAVER 78
                34445666778899999**********9999999999****************99887776 PP

>> TIGR03117  cas_csf4: CRISPR type AFERR-associated DEAD/DEAH-box helicase Csf4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.6   0.0   2.9e-05     0.015      10      70 ..      20      80 ..      13     102 .. 0.85

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 2.9e-05
   TIGR03117 10 edalelkrialveaatGvGktlamllaaeallkerpdakvaiavPtlalldqlleeyerlq 70
                  +++++  a++++ tG Gktla+ll  +  l+  +  ++ i vP   l  q++ + er  
  MMETSP1137-20121227|5693_1 20 MASIRKGEHAVINSPTGSGKTLAYLLPLLPRLHVSRPMQLLIVVPSRELAVQTAAAVERYW 80
                5688999999***********************9999*****************9999865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (551 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       106  (0.0258411); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                         8  (0.00195027); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.49u 0.18s 00:00:00.67 Elapsed: 00:00:00.66
# Mc/sec: 1101.91
//
Query:       MMETSP1137-20121227|5694_1  [L=294]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.8e-96  319.5   0.0    3.2e-96  319.3   0.0    1.0  1  TIGR03413 GSH_gloB: hydroxyacylglutathione hydrolase
    0.00057   16.0   0.0     0.0008   15.5   0.0    1.1  1  TIGR00361 ComEC_Rec2: DNA internalization-related competence protein ComEC/Rec2
  ------ inclusion threshold ------
      0.028   11.6   0.0      0.048   10.8   0.0    1.3  1  TIGR03307 PhnP: phosphonate metabolism protein PhnP


Domain annotation for each model (and alignments):
>> TIGR03413  GSH_gloB: hydroxyacylglutathione hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  319.3   0.0   2.3e-99   3.2e-96       2     248 .]      44     294 .]      43     294 .] 0.99

  Alignments for each domain:
  == domain 1    score: 319.3 bits;  conditional E-value: 2.3e-99
   TIGR03413   2 iaipalsdNyiwllkdeks.eavvvDpgeaepvlealeekglkleaillTHhHaDHvggvaellekfpvkvvgpaee..ripgltkevkegdevellelevevlevpGHtlgHiayyleeekvlFcgDtLfsaGCGrlfegtaeqmleslqklaaLpeetkvycaHEYtlsNlrFalavepenealkerlkevealrakgkptlPstlaeekatNpFLraeeaevkaalee.ekaeevevfaelRekkdkf 248
                  +++al+dNy++l++d+++ +++++D++e +p++++l+++g+kl+++l+THhH+DH gg+ el++ +++k++gpa e  ripg++++v  gd++e+++l+++v++v GHt+gHia+y ee k  F+gD+Lf++GCGrlfegt+eq ++slq+laaLp +tkvycaHEYt++NlrFal+v+++n++l++r+k +++lr++gkpt+P++++ e+ tNpF+ra++ae++a+l+   ++++++vf +lR++kdkf
  MMETSP1137-20121227|5694_1  44 XQFRALNDNYAFLVHDASTgATMAIDTPEVSPIMDVLNRRGWKLSHVLNTHHHHDHAGGNLELKRLTGCKIIGPAGEasRIPGIDTPVGGGDSFEVGNLRFQVIDVGGHTKGHIAFYNEEMKSAFVGDSLFALGCGRLFEGTPEQAWASLQRLAALPPDTKVYCAHEYTEANLRFALSVDSANPDLQDRAKVIKQLRSEGKPTVPTSIELELMTNPFMRASNAELRAQLGVsPEEKDAAVFGKLRKMKDKF 294
                 6899***************9*******************************************************9999******************************************************************************************************************************************************99889999************98 PP

>> TIGR00361  ComEC_Rec2: DNA internalization-related competence protein ComEC/Rec2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   5.8e-07    0.0008     481     552 ..      76     147 ..      62     152 .. 0.88

  Alignments for each domain:
  == domain 1    score: 15.5 bits;  conditional E-value: 5.8e-07
   TIGR00361 481 iiPyLqakgiklealiLshedqDhaGgaeiiLkaypvvrlviPkrkveeee.areevkrGealqwqgLrFsvl 552
                 i+  L+++g kl  ++ +h+++DhaGg    Lk     +++ P +         ++v  G+ +++ +LrF+v 
  MMETSP1137-20121227|5694_1  76 IMDVLNRRGWKLSHVLNTHHHHDHAGGN-LELKRLTGCKIIGPAGEASRIPgIDTPVGGGDSFEVGNLRFQVI 147
                 667799********************95.55899999******9998776515688999************95 PP

>> TIGR03307  PhnP: phosphonate metabolism protein PhnP
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   3.5e-05     0.048      66      94 ..      86     114 ..      65     123 .. 0.87

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 3.5e-05
   TIGR03307  66 slqaillthyhmdhvqGlfplrwGvGeki 94 
                 +l+++l th+h dh+ G ++l+  +G ki
  MMETSP1137-20121227|5694_1  86 KLSHVLNTHHHHDHAGGNLELKRLTGCKI 114
                 789*****************998888766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (294 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        85  (0.0207216); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.28u 0.20s 00:00:00.48 Elapsed: 00:00:00.37
# Mc/sec: 1048.78
//
Query:       MMETSP1137-20121227|5695_1  [L=320]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (320 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        88  (0.0214529); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.17s 00:00:00.44 Elapsed: 00:00:00.37
# Mc/sec: 1141.53
//
Query:       MMETSP1137-20121227|5696_1  [L=439]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (439 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       136  (0.0331546); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.14s 00:00:00.48 Elapsed: 00:00:00.60
# Mc/sec: 965.72
//
Query:       MMETSP1137-20121227|5697_1  [L=785]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (785 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        64  (0.0156021); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.48u 0.16s 00:00:00.64 Elapsed: 00:00:00.67
# Mc/sec: 1546.44
//
Query:       MMETSP1137-20121227|5698_1  [L=354]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.6e-23   78.8  11.0    1.4e-22   78.3   7.6    1.2  1  TIGR00803 nst: UDP-galactose transporter
     0.0011   16.4   2.7     0.0033   14.8   1.9    1.8  1  TIGR00817 tpt: Tpt phosphate/phosphoenolpyruvate translocator


Domain annotation for each model (and alignments):
>> TIGR00803  nst: UDP-galactose transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.3   7.6   6.6e-26   1.4e-22       5     222 .]      83     312 ..      81     312 .. 0.90

  Alignments for each domain:
  == domain 1    score: 78.3 bits;  conditional E-value: 6.6e-26
   TIGR00803   5 PiliilkqnnlvlvalgnllaagkqvT.qlkilstalmtlgslvaslgdkqwfslkllklgvaivqlvqssa......ktlseg.nlvvglsavlsalls...sglagvyfekilkdkdts.fyvrnlqlplfgllvtfvvlllsdgslisnkgffigyttavwivvllnvvgglcvglvvkyadnttksivlalsiilslllsvrlfdaklsltfalgvilvflatllY 222
                 P+li++++nn  ++ l  ++  ++q   q+k   t l+  ++l + l   q ++l  l  g+a  ql ++ +        ++ g + ++ + +v+ +++s   s l g+y ek lk   +  +  +n+ql++ g+++ + + +l+d+ +   +g f+g  +  ++vv+ n++ gl +++v kyadn+    + a++ ++ +++ v lfda+++   +l vilv ++t+ Y
  MMETSP1137-20121227|5698_1  83 PALIYFVNNNFLFLILQAVDPTTFQLLsQMKTIFTGLLFRLFLKRHLTVVQYLALVTLACGTACSQLPSAPHavgvseSSVRVGrSALTAMWGVALSVISsllSALGGIYSEKLLKGRPSAsIHWQNIQLYVWGVVFNALGCYLKDRDALLARGLFAGFGARATAVVVCNALNGLAISAVLKYADNIARVYAHAIAMMITMVACVHLFDAPVTPQLVLAVILVATSTFQY 312
                 9************************988***9999999999**************************999887777765555566444444444444444000456799*******998777*********************************************************************************************************988 PP

>> TIGR00817  tpt: Tpt phosphate/phosphoenolpyruvate translocator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   1.9   1.6e-06    0.0033      61     181 ..      74     215 ..      46     320 .. 0.69

  Alignments for each domain:
  == domain 1    score: 14.8 bits;  conditional E-value: 1.6e-06
   TIGR00817  61 skallklllpvaivhtighvtsnvslskvavSfthtikalepifsvvlskfflgrefpltlylsLlpivlGva.................lasltelsfnllgflsamisniefvarnifsKkiltkk.....sldklnlyal 181
                  +++l  +lp a++ ++++ +    l++v       +  ++ if+ +l ++fl+r++++  yl+L+ +  G a                      ++   + g+  ++is +      i+s k+l+ +        +++ly  
  MMETSP1137-20121227|5698_1  74 MSEFLSYMLP-ALIYFVNNNFLFLILQAVDPTTFQLLSQMKTIFTGLLFRLFLKRHLTVVQYLALVTLACGTAcsqlpsaphavgvsessVRVGRSALTAMWGVALSVISSLLSALGGIYSEKLLKGRpsasiHWQNIQLYVW 215
                 4566666777.4555666777777777777788888899*******************************************999963332222223334456667788888888889********99666552333333322 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (354 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       155  (0.0377864); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.30u 0.16s 00:00:00.46 Elapsed: 00:00:00.44
# Mc/sec: 1061.91
//
Query:       MMETSP1137-20121227|5700_1  [L=1085]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0035   14.1   0.0     0.0058   13.3   0.0    1.2  1  TIGR00300 TIGR00300: TIGR00300 family protein


Domain annotation for each model (and alignments):
>> TIGR00300  TIGR00300: TIGR00300 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   0.0   1.4e-06    0.0058       5      39 ..     457     491 ..     454     504 .. 0.90

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 1.4e-06
   TIGR00300   5 eveleGhlidslilpkaldiildlgGdfkvlefei 39 
                 ++ l Ghl ds  +++ald++   gG f++l++++
  MMETSP1137-20121227|5700_1 457 VLSLSGHLFDSGYINEALDVVEAAGGRFELLNVSV 491
                 6789****************************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1085 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        61  (0.0148708); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.61u 0.14s 00:00:00.75 Elapsed: 00:00:00.73
# Mc/sec: 1961.76
//
Query:       MMETSP1137-20121227|5701_1  [L=302]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (302 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        94  (0.0229157); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.16s 00:00:00.39 Elapsed: 00:00:00.33
# Mc/sec: 1207.90
//
Query:       MMETSP1137-20121227|5702_1  [L=392]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   1.2e-119  397.4   0.0   7.6e-119  394.7   0.0    1.8  1  TIGR00339 sopT: sulfate adenylyltransferase


Domain annotation for each model (and alignments):
>> TIGR00339  sopT: sulfate adenylyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  394.7   0.0  1.9e-122  7.6e-119      37     382 ..      47     389 ..      28     390 .. 0.96

  Alignments for each domain:
  == domain 1    score: 394.7 bits;  conditional E-value: 1.9e-122
   TIGR00339  37 lrdvelllvGafsPleGfmneadyesvveemrLsdgvlfslpilLdideedakdikegdrvllvdkkgqplailtieevykpdkekeakkvygttdpehpavkklk.sagevyigGklevinlpkfedfpefrltpaevReeikeegwdkvvAfQtRNpvHraHeeLtkraaer...dknagvlvhplvGltkkgDipaevrlrayevlkekyld...pervvltllplaMryagprEallHaiiRkNyGathfivGRdhagvgkslkgqdlysayeaqelvekakaelglkivpfeevlyleeedeiatadeakaekekllnisgtklRemlregekpPeefsrpevvkvLv 382
                  + v+ll++G fsPl+Gfmnea+y+svve m+L +g++f+lp+++d++++ ++    g+++l++++ g+++a +t+e+ ++pdk ke+ ++ygt + ehp+v++++ ++g  yigG+l+ +  p+ +dfp+   tp+e+Ree+ +    +vvAfQ+RNpvHraH+eL++ra++     +na+vlvhp++G t+++Dip  vr+++yevl+e+++d   ++r+ +++lp++M++agprEa+ H++iRkN G+thfi+GRd+ag ++s+ g+d+y+a +aq+l++++++elg++ vp+ +++y+ ee+ ++ta+ ak++   + ++sgtk+R+mlr+ge++Pe+f++++vv+vL+
  MMETSP1137-20121227|5702_1  47 AAXVQLLCNGGFSPLTGFMNEAEYNSVVEGMKLPSGLIFGLPVVMDTSDSAID---VGTKILMTYQ-GTNMALMTVESKWRPDKPKECLECYGTASIEHPGVRMVAmERGTHYIGGPLQGLGVPT-RDFPCK--TPKELREELPDD--ADVVAFQCRNPVHRAHYELFTRALDApnvADNAVVLVHPTCGPTQEEDIPGPVRFKTYEVLQEETKDtdsGKRTRWAYLPYSMHMAGPREAIHHMMIRKNFGCTHFIIGRDMAGSKSSVTGEDFYGAFDAQDLAKSKADELGVQAVPSLNLVYTAEEG-YVTAEYAKEKDFGVKKLSGTKFRKMLRDGEDIPEWFAFKSVVDVLR 389
                 46799********************************************9988...99********.***************************************99*****************.****98..***********9..9*************************85449********************************9998333469*********************************************************************************9998.********************************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (392 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       102  (0.0248659); expected 82.0 (0.02)
Passed bias filter:                      101  (0.0246221); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.18s 00:00:00.54 Elapsed: 00:00:00.35
# Mc/sec: 1478.28
//
Query:       MMETSP1137-20121227|5703_1  [L=144]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.5e-22   76.0   9.4    7.4e-22   75.6   6.5    1.2  1  TIGR00029 S20: ribosomal protein S20


Domain annotation for each model (and alignments):
>> TIGR00029  S20: ribosomal protein S20
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.6   6.5   1.8e-25   7.4e-22       6      85 ..      58     137 ..      54     139 .. 0.95

  Alignments for each domain:
  == domain 1    score: 75.6 bits;  conditional E-value: 1.8e-25
   TIGR00029   6 SaeKRirqnekrrlrNksyksklktliKkveasveagekdkakealkevakkidkaakkgiihkNkAarkksrlaaalkk 85 
                  a K +r+ne+rr  Nk yks++kt+iKkve sv+ g+ + a  al+ +++ idk +k  i+hkN+Aarkks+l+ + kk
  MMETSP1137-20121227|5703_1  58 AATKPMRTNERRRAYNKMYKSEMKTMIKKVETSVATGDYAMAVPALSRAFSIIDKNVKRNIVHKNTAARKKSQLTLKEKK 137
                 6899**********************************************************************977665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (144 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       271  (0.0660653); expected 82.0 (0.02)
Passed bias filter:                      138  (0.0336421); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.18u 0.15s 00:00:00.32 Elapsed: 00:00:00.30
# Mc/sec: 633.55
//
Query:       MMETSP1137-20121227|5704_1  [L=106]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (106 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        34  (0.00828864); expected 82.0 (0.02)
Passed bias filter:                       32  (0.00780107); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.11s 00:00:00.25 Elapsed: 00:00:00.33
# Mc/sec: 423.96
//
Query:       MMETSP1137-20121227|5705_1  [L=261]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (261 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        85  (0.0207216); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.13s 00:00:00.34 Elapsed: 00:00:00.34
# Mc/sec: 1013.21
//
Query:       MMETSP1137-20121227|5706_1  [L=172]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.2e-45  149.5  19.5    1.9e-42  141.7   9.2    2.0  2  TIGR01100 V_ATP_synt_C: V-type ATPase, C subunit
  ------ inclusion threshold ------
       0.15    9.7   5.0        2.9    5.6   0.1    2.5  2  TIGR02972 TMAO_torE: trimethylamine N-oxide reductase system, TorE protein


Domain annotation for each model (and alignments):
>> TIGR01100  V_ATP_synt_C: V-type ATPase, C subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  141.7   9.2   9.4e-46   1.9e-42       1     106 [.      20     129 ..      20     131 .. 0.94
   2 !   12.3   0.3   1.6e-05     0.033      33      68 ..     134     169 ..     129     172 .] 0.85

  Alignments for each domain:
  == domain 1    score: 141.7 bits;  conditional E-value: 9.4e-46
   TIGR01100   1 ffgvlGaaaalvfsalGaayGtaksgvGiaalgvlrpelilksiipvvmaGiiaiyGlvvavliagslkekek....yslykgfihlgaGlavGlsglaaGlaiGivGda 106
                 f+g++Gaa al+fs++GaayGt ksg+Gi++lgv++p+ i+ksi+pvvmaG+++iyGl++av+ia+++++ ++    y+ +++f+h+g G+a+GlsglaaG+aiGivGd+
  MMETSP1137-20121227|5706_1  20 FWGFMGAAFALIFSNMGAAYGTGKSGMGISSLGVIEPDKIMKSIVPVVMAGVLGIYGLIIAVIIANNIEAIDAgkpaYNYFSAFAHFGGGMACGLSGLAAGMAIGIVGDT 129
                 89*****************************************************************98754333459******************************96 PP

  == domain 2    score: 12.3 bits;  conditional E-value: 1.6e-05
   TIGR01100  33 gvlrpelilksiipvvmaGiiaiyGlvvavliagsl 68 
                 +  +p+l +  ++ +++a  +++yGl+v ++++ + 
  MMETSP1137-20121227|5706_1 134 SAREPKLFVGMVLILIFAEALGLYGLIVGLILSAKA 169
                 55678999999999*****************99875 PP

>> TIGR02972  TMAO_torE: trimethylamine N-oxide reductase system, TorE protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   0.8    0.0016       3.3      21      39 ..      64      82 ..      59      86 .. 0.85
   2 ?    5.6   0.1    0.0014       2.9      15      39 ..     141     164 ..     131     167 .. 0.74

  Alignments for each domain:
  == domain 1    score: 5.4 bits;  conditional E-value: 0.0016
   TIGR02972 21 FPiLsvavvggYGfivWll 39
                 P+   +v+g YG+i+ ++
  MMETSP1137-20121227|5706_1 64 VPVVMAGVLGIYGLIIAVI 82
                5999999********9766 PP

  == domain 2    score: 5.6 bits;  conditional E-value: 0.0014
   TIGR02972  15 FIivvLFPiLsvavvggYGfivWll 39 
                 F+ +vL  i +  ++g+YG+iv l+
  MMETSP1137-20121227|5706_1 141 FVGMVLILIFA-EALGLYGLIVGLI 164
                 55566654544.579*******887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (172 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       182  (0.0443686); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.19u 0.11s 00:00:00.30 Elapsed: 00:00:00.35
# Mc/sec: 648.63
//
Query:       MMETSP1137-20121227|5707_1  [L=86]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (86 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        41  (0.00999512); expected 82.0 (0.02)
Passed bias filter:                       41  (0.00999512); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.14s 00:00:00.28 Elapsed: 00:00:00.68
# Mc/sec: 166.93
//
Query:       MMETSP1137-20121227|5708_1  [L=402]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0069   13.3   0.0      0.058   10.3   0.0    2.2  2  TIGR03866 PQQ_ABC_repeats: PQQ-dependent catabolism-associated beta-propeller protein


Domain annotation for each model (and alignments):
>> TIGR03866  PQQ_ABC_repeats: PQQ-dependent catabolism-associated beta-propeller protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.3   0.0   1.4e-05     0.058      53     113 ..     206     266 ..     192     289 .. 0.85
   2 ?   -0.8   0.0     0.032   1.3e+02     174     197 ..     300     323 ..     291     343 .. 0.70

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 1.4e-05
   TIGR03866  53 kllyvcasdsdavqvldaeteevlkelpsGedPelfvlepdgkllyianeddalvtvvdie 113
                  +++v a ds +  ++ a++++   ++p G  P  ++++p+gkl+++  e d  v     +
  MMETSP1137-20121227|5708_1 206 DFVMVYAFDSVRGGLIGAANSNRHLKMPEGSGPRHLAFHPSGKLVFVLCELDGYVRTCSWD 266
                 567888888888899999999*****************************99988766555 PP

  == domain 2    score: -0.8 bits;  conditional E-value: 0.032
   TIGR03866 174 ftadgkelwvsseigGtvsvidva 197
                  +adg +l+v+s   G ++v+ ++
  MMETSP1137-20121227|5708_1 300 VSADGCTLYVTSRGDGAIVVFRIS 323
                 456667777777766766666554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (402 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        70  (0.0170648); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.30u 0.12s 00:00:00.42 Elapsed: 00:00:00.47
# Mc/sec: 1128.93
//
Query:       MMETSP1137-20121227|5709_1  [L=269]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.9e-13   46.3   0.0    1.3e-12   45.6   0.0    1.3  1  TIGR04182 glyco_TIGR04182: glycosyltransferase, TIGR04182 family
    4.1e-09   33.7   0.0    6.5e-09   33.0   0.0    1.3  1  TIGR03937 PgaC_IcaA: poly-beta-1,6 N-acetyl-D-glucosamine synthase
    6.6e-06   23.1   0.2      9e-06   22.6   0.2    1.2  1  TIGR03965 actino_glycTran: mycofactocin system glycosyltransferase
    1.1e-05   22.5   0.0    1.6e-05   21.9   0.0    1.3  1  TIGR03469 HpnB: hopene-associated glycosyltransferase HpnB
  ------ inclusion threshold ------
      0.012   11.9   0.0      0.017   11.5   0.0    1.1  1  TIGR03105 gln_synth_III: glutamine synthetase, type III


Domain annotation for each model (and alignments):
>> TIGR04182  glyco_TIGR04182: glycosyltransferase, TIGR04182 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.6   0.0   1.5e-15   1.3e-12       3     209 ..       6     223 ..       4     267 .. 0.72

  Alignments for each domain:
  == domain 1    score: 45.6 bits;  conditional E-value: 1.5e-15
   TIGR04182   3 cvliPtlneaatigevieefkelG....y.edilvidGns......tddtqeiakeaGa.rvvaq...sGkGkGqavreavelidkpyvllldgdgtylpedaeallePllsGeadhviGnrlad.....leegaltrlnlvGnkllnklfkiiygkelediLsGyraftresikr...leLkeeGfeietelavesvkkelrvevvpitykkrpegsetkLnPlkdGlk 209
                 +v++P+++ea+ i+ + e++ ++     +  +++v d +s      +d+ +++ake  a r++++   +G+G  +av  ++++  ++++l +d+d  ++pe + a+  P+l+G ad  +G r +      ++ + ++r+   G +ll + +++      +d +sG+  + ++++ r     ++++Gf+i  el v +  + +rv+ vpit+++r   +e kL+    G +
  MMETSP1137-20121227|5709_1   6 SVVVPAYDEAPNIRPLTERLFAATraanIeAELIVADDESkgseatRDAVEQLAKEGYAvRILMRrraEGRGLSSAVLLGFQQARHDVMLCMDADLQHEPESVPAVALPVLKGGADFAVGSRHVGdgglgFDWSPVRRVVSAGATLLAWPLTA-----SSDPMSGFFCLSKKTLVRgasSGINAMGFKIGLELMVRC--RCTRVADVPITFQERV-AGESKLS----GKQ 223
                 799*************99975543111131356888988733222234445556554442555432226888889***********************************************8742222266777889999999999888765.....5799*********999762225699*************9..5689***********9.7788886....344 PP

>> TIGR03937  PgaC_IcaA: poly-beta-1,6 N-acetyl-D-glucosamine synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.0   0.0     8e-12   6.5e-09      45     136 ..       3     101 ..       1     112 [. 0.80

  Alignments for each domain:
  == domain 1    score: 33.0 bits;  conditional E-value: 8e-12
   TIGR03937  45 pkvsllvpcynegenve...etisallklkypnleviainDGsk..Ddtaeildklakkedrlrvihleen..qGkaaalneglkaakseylvciDgDa 136
                 p++s++vp+y+e+ n++   e + a+++    + e+i+ +D sk  + t + +++lak+   +r++ +++   +G ++a+  g ++a++++++c+D+D 
  MMETSP1137-20121227|5709_1   3 PSLSVVVPAYDEAPNIRpltERLFAATRAANIEAELIVADDESKgsEATRDAVEQLAKEGYAVRILMRRRAegRGLSSAVLLGFQQARHDVMLCMDADL 101
                 689************98222445555666677899*******9833578899*******99999998766511556899******************95 PP

>> TIGR03965  actino_glycTran: mycofactocin system glycosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.6   0.2   1.1e-08     9e-06      74     169 ..       3     105 ..       1     129 [. 0.75

  Alignments for each domain:
  == domain 1    score: 22.6 bits;  conditional E-value: 1.1e-08
   TIGR03965  74 dsvtvVvPvrdrpaglarllaalealdyprd.rlevivVDDgSedpveta..aar..aaeltvrvi..RhdrsqGpaaaRNaGlraartefvAFlDsDvvprp 169
                 +s +vVvP  d   +++ l + l a +++++  +e+iv DD S+   +t+  +++  +    vr++  R  + +G ++a   G+++ar +++  +D D   +p
  MMETSP1137-20121227|5709_1   3 PSLSVVVPAYDEAPNIRPLTERLFAATRAANiEAELIVADDESKGSEATRdaVEQlaKEGYAVRILmrRRAEGRGLSSAVLLGFQQARHDVMLCMDADLQHEP 105
                 789********9999988877777666665523789*****99754444310333335567788873355556788**********************98776 PP

>> TIGR03469  HpnB: hopene-associated glycosyltransferase HpnB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.9   0.0   1.9e-08   1.6e-05      44     156 ..       3     111 ..       1     124 [. 0.76

  Alignments for each domain:
  == domain 1    score: 21.9 bits;  conditional E-value: 1.9e-08
   TIGR03469  44 PevvavvPardeaevigeaveslleqdYpGkl..kvilvDDese..DgtaeiarevaealdkadrltvvsgkelpkgWsGklWaveqGleaakalaaeyllltDaDiahepdnlarl 156
                 P++ +vvPa dea  i+   e l + + + ++  ++i+ DDes+  ++t ++ +++a+   ++  + ++  ++  +   G   av  G+++a++   + +l  DaD++hep+++ ++
  MMETSP1137-20121227|5709_1   3 PSLSVVVPAYDEAPNIRPLTERLFAATRAANIeaELIVADDESKgsEATRDAVEQLAK---EGYAVRILMRRR--AEGRGLSSAVLLGFQQARH---DVMLCMDADLQHEPESVPAV 111
                 8999*******************99988887633699*****9722345555555555...344566665433..33467778999******96...99************998765 PP

>> TIGR03105  gln_synth_III: glutamine synthetase, type III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0     2e-05     0.017     117     176 ..      32      90 ..      19     106 .. 0.85

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 2e-05
   TIGR03105 117 tGveceffllrreedgklsvaDkaDklakpcYDqralmrrydvleeisealnelGwdlYq 176
                   +e+e+++ ++e++g+ ++ D+ ++lak  Y +r lmrr+   + +s a+  lG+++  
  MMETSP1137-20121227|5709_1  32 ANIEAELIVADDESKGSEATRDAVEQLAKEGYAVRILMRRRAEGRGLSSAVL-LGFQQAR 90 
                 569*************************************998888887764.6776655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (269 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       174  (0.0424183); expected 82.0 (0.02)
Passed bias filter:                      114  (0.0277913); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.26u 0.17s 00:00:00.43 Elapsed: 00:00:00.66
# Mc/sec: 537.96
//
Query:       MMETSP1137-20121227|5710_1  [L=286]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (286 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        79  (0.0192589); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.16s 00:00:00.39 Elapsed: 00:00:00.34
# Mc/sec: 1110.26
//
Query:       MMETSP1137-20121227|5711_1  [L=234]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.015   12.1   4.1      0.019   11.7   2.9    1.1  1  TIGR01843 type_I_hlyD: type I secretion membrane fusion protein, HlyD family
       0.04    9.4   2.4      0.045    9.2   1.7    1.0  1  TIGR02169 SMC_prok_A: chromosome segregation protein SMC
       0.43    8.4   7.4       0.16    9.8   3.1    1.8  2  TIGR03741 PRTRC_E: PRTRC system protein E


Domain annotation for each model (and alignments):
>> TIGR01843  type_I_hlyD: type I secretion membrane fusion protein, HlyD family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   2.9   1.4e-05     0.019     143     228 ..      14      99 ..       6     120 .. 0.87

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 1.4e-05
   TIGR01843 143 aqlesleaqikqleaeleglqaqlqalrqqleliseelealrkLkekglvsrlelLelereraelqgelaeleaeleklkaeldel 228
                 +++++le+q++ + a le+++a+++a++++ e +++++++++ L+++++ ++ +l e + ++  l + + +l+a+l++  ae d++
  MMETSP1137-20121227|5711_1  14 SERKRLEQQLEDQTAVLEEAAAAAAAYKKRCEDAERRAQIAELLTARQASAMKKLAEENLNLLTLISGMPTLRASLANGSAEGDAT 99 
                 68899************************************************************999999999998877776654 PP

>> TIGR02169  SMC_prok_A: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   1.7   3.3e-05     0.045     285     345 ..      11      71 ..       4     120 .. 0.83

  Alignments for each domain:
  == domain 1    score: 9.2 bits;  conditional E-value: 3.3e-05
   TIGR02169 285 lgeeeqlavkekleelkaeiekleraiaekeeeledaeerlakaeaeidklkeeieelere 345
                   e e  ++ ++le+ +a +e++ +a a+++++ edae+r + ae    ++++ +++l++e
  MMETSP1137-20121227|5711_1  11 YDESERKRLEQQLEDQTAVLEEAAAAAAAYKKRCEDAERRAQIAELLTARQASAMKKLAEE 71 
                 56789999******************************************99999999876 PP

>> TIGR03741  PRTRC_E: PRTRC system protein E
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   3.1   0.00012      0.16      69     103 ..      14      48 ..       6      51 .. 0.85
   2 ?   -1.1   0.1      0.29     4e+02      79      99 ..      48      68 ..      44      76 .. 0.59

  Alignments for each domain:
  == domain 1    score: 9.8 bits;  conditional E-value: 0.00012
   TIGR03741  69 eareslaeqvaatravleaaaakeaeaakakkaak 103
                 + r+ l +q+++++avle+aaa++a+ +k  ++a+
  MMETSP1137-20121227|5711_1  14 SERKRLEQQLEDQTAVLEEAAAAAAAYKKRCEDAE 48 
                 67999*************99999999888877765 PP

  == domain 2    score: -1.1 bits;  conditional E-value: 0.29
   TIGR03741 79 aatravleaaaakeaeaakak 99
                +  ++++e + a++a+a k+ 
  MMETSP1137-20121227|5711_1 48 ERRAQIAELLTARQASAMKKL 68
                555566666666666665554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (234 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       235  (0.0572891); expected 82.0 (0.02)
Passed bias filter:                      175  (0.0426621); expected 82.0 (0.02)
Passed Vit filter:                        21  (0.00511945); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.26u 0.17s 00:00:00.43 Elapsed: 00:00:00.43
# Mc/sec: 718.27
//
Query:       MMETSP1137-20121227|5712_1  [L=229]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (229 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        62  (0.0151146); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.13s 00:00:00.33 Elapsed: 00:00:00.35
# Mc/sec: 863.59
//
Query:       MMETSP1137-20121227|5714_1  [L=294]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (294 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.17s 00:00:00.40 Elapsed: 00:00:00.44
# Mc/sec: 881.93
//
Query:       MMETSP1137-20121227|5715_1  [L=200]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (200 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       103  (0.0251097); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.14s 00:00:00.34 Elapsed: 00:00:00.56
# Mc/sec: 471.39
//
Query:       MMETSP1137-20121227|5716_1  [L=393]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   1.3e-152  505.5  15.5   1.3e-151  502.2  10.8    1.9  1  TIGR02056 ChlG: chlorophyll synthase ChlG
     1e-100  334.7   7.3   1.3e-100  334.4   5.1    1.1  1  TIGR01476 chlor_syn_BchG: bacteriochlorophyll/chlorophyll synthetase
      4e-09   34.2   0.3      4e-09   34.2   0.2    1.5  2  TIGR01475 ubiA_other: putative 4-hydroxybenzoate polyprenyltransferase
    1.1e-07   29.8   2.4    2.7e-07   28.5   1.6    1.7  1  TIGR01473 cyoE_ctaB: protoheme IX farnesyltransferase
    2.1e-07   28.5   2.8    6.1e-07   27.0   1.9    1.7  1  TIGR01474 ubiA_proteo: 4-hydroxybenzoate polyprenyl transferase


Domain annotation for each model (and alignments):
>> TIGR02056  ChlG: chlorophyll synthase ChlG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  502.2  10.8  1.6e-154  1.3e-151       1     304 [.      71     388 ..      71     390 .. 0.95

  Alignments for each domain:
  == domain 1    score: 502.2 bits;  conditional E-value: 1.6e-154
   TIGR02056   1 qllgikgaapqetskwkirlqltkpvtwiplvwgvvcgaaasgnytw................sledvlkailcmllsgplltgytqtlndfydreidainepyrpipsgaisvpevvtqvvllllaglavafildlwaghetptvtvlalfgsllayiysapplklkqngwlgnyalgasyialpwwagqalfgeltpdvvvltllyslaglgiaivndfksvegdralglqslpvafgietakwicvvaidvtqllvaayllaigknlyalilvlliipqivfqdkyflkdplkydvkyqasaqpflvlgilvaalal 304
                 qllg++ga  +e ++wkirlqltkpvtw+pl+wgv cgaaasgny+w                +  d+lka+ cm+lsgp ltgytqt+nd+ydreidainepyrpipsg is+ ev++qv++lllagl+ a+  d+wagh++ptv+ +a++gsl++yiysapplklkq  w+gnyalgasyi+lpww+gqa+fg+l+  v+vlt lys+aglgiaivndfks+egd +lgl+slpv+fg++ akwic ++id+tql va+yl  ig++ yal+l+ li pqi++q+ y+lkdp+ ydvkyqasaqpflv+gil +ala 
  MMETSP1137-20121227|5716_1  71 QLLGMRGAG-DEENIWKIRLQLTKPVTWVPLIWGVACGAAASGNYHWwnpltigepghipfelASTDLLKALACMMLSGPFLTGYTQTINDWYDREIDAINEPYRPIPSGKISEGEVIAQVWVLLLAGLGTAYACDVWAGHDFPTVLCIAIGGSLISYIYSAPPLKLKQ-SWVGNYALGASYISLPWWCGQAMFGTLSLPVMVLTTLYSIAGLGIAIVNDFKSIEGDAKLGLRSLPVVFGVDKAKWICAGTIDITQLGVAGYLAYIGETTYALVLLGLIAPQIALQFLYLLKDPIEYDVKYQASAQPFLVFGILTTALAC 388
                 8*******9.999*********************************9655544444333333234699****************************************************************************************************9.5***************************************************************************************************************************************************96 PP

>> TIGR01476  chlor_syn_BchG: bacteriochlorophyll/chlorophyll synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  334.4   5.1  1.5e-103  1.3e-100       1     282 [.      86     388 ..      86     389 .. 0.98

  Alignments for each domain:
  == domain 1    score: 334.4 bits;  conditional E-value: 1.5e-103
   TIGR01476   1 rarleLikPvtWiapiwavlCGavasGalrgs................vekflklLlgmllaGPlltGlsqavndyaDrdvDainePqrpiPsGaislrevlililvltvlglavalvlgrwv......ivlltvlGvvlaliyslePiklkrngWlGnalvalsyvglaWlaGhavfaaltleivvvaLlyslaaaGilvlnDfksveGDrklGlrslpvalGvkvaaklavvvidvaqilvigllliwgkqlvativlllLvaqiiaqaklflrdpeenevkynatavpllvlgmlvaalal 282
                 ++rl+L kPvtW+++iw+v CGa+asG +++                 + ++lk+L +m+l+GP+ltG++q++nd++Dr++DaineP+rpiPsG+is  ev+ ++ vl+++gl+ a+  ++w+      ++ +++ G ++++iys++P+klk++ W+Gn+++++sy++l+W++G+a+f++l+l ++v++ lys+a++Gi+++nDfks+eGD klGlrslpv +Gv++a +++  +id+ q  v+g+l ++g++ +a ++l l+++qi  q  ++l+dp e +vky+a+a+p+lv+g l +ala 
  MMETSP1137-20121227|5716_1  86 KIRLQLTKPVTWVPLIWGVACGAAASGNYHWWnpltigepghipfelaSTDLLKALACMMLSGPFLTGYTQTINDWYDREIDAINEPYRPIPSGKISEGEVIAQVWVLLLAGLGTAYACDVWAghdfptVLCIAIGGSLISYIYSAPPLKLKQS-WVGNYALGASYISLPWWCGQAMFGTLSLPVMVLTTLYSIAGLGIAIVNDFKSIEGDAKLGLRSLPVVFGVDKAKWICAGTIDITQLGVAGYLAYIGETTYALVLLGLIAPQIALQFLYLLKDPIEYDVKYQASAQPFLVFGILTTALAC 388
                 689***************************988***********9999899*****************************************************************************9999*******************985.**************************************************************************************************************************************************985 PP

>> TIGR01475  ubiA_other: putative 4-hydroxybenzoate polyprenyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.4       1.5   1.2e+03      37      56 ..      14      33 ..       7      34 .. 0.72
   2 !   34.2   0.2   4.8e-12     4e-09      53     248 ..     156     359 ..     137     382 .. 0.75

  Alignments for each domain:
  == domain 1    score: -3.6 bits;  conditional E-value: 1.5
   TIGR01475 37 klililvalvsaRtaamavn 56
                 l   ++a++s+Rtaa a+n
  MMETSP1137-20121227|5716_1 14 LLQAAVTAIASMRTAAPAIN 33
                44456789999999998887 PP

  == domain 2    score: 34.2 bits;  conditional E-value: 4.8e-12
   TIGR01475  53 mavnrlideeiDakNPRtknrelvsGkiskkeavtliilslilfliasyflNkla.......fiLspvvllvliiy..pylK.RftalahlvLglvlglavlagavavigeisillvavllvigvvfwvagfDliyaiqDlefDkknglksiparfGvkaalkiaslshvitvvlllllgllvke..gklallallliglilvyehsl 248
                  ++n   d+eiDa N     r+++sGkis+ e+++ + + l+  l ++y    +a       +++++   l+ +iy  p lK + ++  ++ Lg  +   +     a+ g++s     ++l+   ++   g  +++  + +e D k gl+s+p+ fGv +a +i + +  it + ++    +++e    l+ll+l++  + l + + l
  MMETSP1137-20121227|5716_1 156 QTINDWYDREIDAIN--EPYRPIPSGKISEGEVIAQVWVLLLAGLGTAYACDVWAghdfptvLCIAIGGSLISYIYsaPPLKlKQSWVGNYALGASYISLPWWCGQAMFGTLSL--PVMVLTTLYSIAGLGIAIVNDFKSIEGDAKLGLRSLPVVFGVDKAKWICAGTIDITQLGVAGYLAYIGEttYALVLLGLIAPQIALQFLYLL 359
                 5789999********..468*****************9999999999999998873332222444555557777774434564788999*********99999999*******3..3444444445555667889*****************************88777776666555555555522444455555555555555544 PP

>> TIGR01473  cyoE_ctaB: protoheme IX farnesyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.5   1.6   3.3e-10   2.7e-07      34     166 ..     138     275 ..      88     361 .. 0.81

  Alignments for each domain:
  == domain 1    score: 28.5 bits;  conditional E-value: 3.3e-10
   TIGR01473  34 lllllltllgttlaaasanalNmvidrdiDkkMkRTknRplvsgkvspsealafglllgvlgvvlLall.....vnllaallvlagiflyvvvYTll...lKrktilniviGglaGavPpliGwaAvtgsisleallLfli 166
                 l  l++++l++ +  + ++++N ++dr+iD++ +    Rp++sgk+s+ e++a   +l+++g+   +++       + + l++++g  l   +Y+ +   lK++ + n  +G+   ++P + G  A+ g++sl+ ++L ++
  MMETSP1137-20121227|5716_1 138 LKALACMMLSGPFLTGYTQTINDWYDREIDAINE--PYRPIPSGKISEGEVIAQVWVLLLAGLGTAYACdvwagHDFPTVLCIAIGGSLISYIYSAPplkLKQSWVGNYALGASYISLPWWCGQ-AMFGTLSLPVMVLTTL 275
                 4468999999999******************965..79**************9999998888877766422222677888999999999999**9644348999999***************96.78899****9999887 PP

>> TIGR01474  ubiA_proteo: 4-hydroxybenzoate polyprenyl transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.0   1.9   7.5e-10   6.1e-07      39     242 ..     137     347 ..      88     365 .. 0.72

  Alignments for each domain:
  == domain 1    score: 27.0 bits;  conditional E-value: 7.5e-10
   TIGR01474  39 alllLllftvGallmrgaGCviNDlvDrdlDkkVeRtksRPlasgavsvkqalllllvlllvalgvllllnklt.....illgva..slalvliY..PllK.RitylpQlvLglafswgvllgfaavagklstaaivLylasilWtlgYDTiyamqDkedDakigvkstallfgdktksvlailyaltilllalagliaglgavyylalavaal 242
                  l+ L+ +++      g   +iND  Dr++D+  e    RP++sg++s+ + ++ + vlll +lg +   +  +      +l++a  + ++ +iY  P lK + +++   +Lg+++         a++g ls  ++vL +   +  lg   +  ++ +e Dak+g++s  ++fg  + +++++  ++ i+ l +ag  a +g + y+ +++ ++
  MMETSP1137-20121227|5716_1 137 LLKALACMMLSGPFLTGYTQTINDWYDREIDAINE--PYRPIPSGKISEGEVIAQVWVLLLAGLGTAYACDVWAghdfpTVLCIAigGSLISYIYsaPPLKlKQSWVGNYALGASYISLPWWCGQAMFGTLSLPVMVLTTLYSIAGLGIAIVNDFKSIEGDAKLGLRSLPVVFGVDKAKWICAG-TIDITQLGVAGYLAYIGETTYALVLLGLI 347
                 455555555444444577789**********9655..78**********999999999999999888776543211111344433224445555555555526777889999999854444455899999999999988887788888999999999******************999999875.56899999******999999876654333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (393 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        96  (0.0234032); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.36u 0.15s 00:00:00.51 Elapsed: 00:00:00.45
# Mc/sec: 1152.70
//
Query:       MMETSP1137-20121227|5717_1  [L=172]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.4e-23   79.2   0.0    1.3e-22   78.5   0.0    1.2  1  TIGR02464 ribofla_fusion: conserved hypothetical protein


Domain annotation for each model (and alignments):
>> TIGR02464  ribofla_fusion: conserved hypothetical protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.5   0.0   3.2e-26   1.3e-22      57     144 ..      10      97 ..       3     101 .. 0.95

  Alignments for each domain:
  == domain 1    score: 78.5 bits;  conditional E-value: 3.2e-26
   TIGR02464  57 tpeeakklgrkvkkfkekqWdkvkeevmveavlaKFstsedlrelLlstagkklVEasplDkiWGiGldkkdekiedeskGkNlLGkv 144
                  p+++k+lgr+v  f+ + W+  + +v+  ++  KF++s  lr+ L++t g++lVEa+p D+iWG+G + kd+   ++ +G+NlLGk+
  MMETSP1137-20121227|5717_1  10 DPATVKQLGREVDPFDAALWEDRRIAVVAYGNFLKFTQSXALRKRLVETDGMTLVEAAPRDSIWGVGISVKDAANGQKWQGQNLLGKA 97 
                 699*********************************************************************9999999*******97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (172 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        68  (0.0165773); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.18u 0.15s 00:00:00.32 Elapsed: 00:00:00.64
# Mc/sec: 354.72
//
Query:       MMETSP1137-20121227|5718_1  [L=147]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (147 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        49  (0.0119454); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.16s 00:00:00.33 Elapsed: 00:00:00.35
# Mc/sec: 554.35
//
Query:       MMETSP1137-20121227|5719_1  [L=471]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   4.1e-193  639.3   0.5   4.8e-193  639.1   0.4    1.0  1  TIGR02028 ChlP: geranylgeranyl reductase
   1.4e-146  486.3   0.0   1.7e-146  486.0   0.0    1.0  1  TIGR02023 BchP-ChlP: geranylgeranyl reductase
    1.3e-50  170.6   0.1    1.9e-50  170.1   0.1    1.1  1  TIGR02032 GG-red-SF: geranylgeranyl reductase family
    4.3e-08   30.2   0.0     0.0014   15.3   0.0    3.1  3  TIGR01988 Ubi-OHases: ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family
    2.9e-06   24.3   0.2     0.0024   14.7   0.0    2.4  3  TIGR01989 COQ6: ubiquinone biosynthesis monooxygenase COQ6
    1.6e-05   21.8   0.0    2.4e-05   21.2   0.0    1.2  1  TIGR01317 GOGAT_sm_gam: glutamate synthase, NADH/NADPH, small subunit
    1.8e-05   21.6   0.0      3e-05   20.8   0.0    1.3  1  TIGR01316 gltA: glutamate synthase (NADPH), homotetrameric
    0.00014   17.2   0.0    0.00021   16.7   0.0    1.2  1  TIGR03315 Se_ygfK: putative selenate reductase, YgfK subunit
    0.00058   16.6   0.0        0.7    6.5   0.0    3.0  3  TIGR01984 UbiH: 2-polyprenyl-6-methoxyphenol 4-hydroxylase
     0.0021   14.3   0.1     0.0029   13.9   0.1    1.1  1  TIGR03997 mycofact_OYE_2: mycofactocin system FadH/OYE family oxidoreductase 2
     0.0037   14.4   0.0     0.0072   13.4   0.0    1.4  1  TIGR00292 TIGR00292: thiazole biosynthesis enzyme
     0.0037   13.7   0.0     0.0064   12.9   0.0    1.3  1  TIGR01318 gltD_gamma_fam: glutamate synthase, small subunit
     0.0039   13.7   0.1       0.62    6.5   0.0    2.8  3  TIGR03219 salicylate_mono: salicylate 1-monooxygenase
  ------ inclusion threshold ------
      0.014   12.0   0.2      0.032   10.8   0.0    1.7  2  TIGR01292 TRX_reduct: thioredoxin-disulfide reductase
      0.015   11.7   0.0      0.024   11.0   0.0    1.2  1  TIGR00562 proto_IX_ox: protoporphyrinogen oxidase
      0.022   11.4   0.0      0.031   10.9   0.0    1.2  1  TIGR00275 TIGR00275: flavoprotein, HI0933 family


Domain annotation for each model (and alignments):
>> TIGR02028  ChlP: geranylgeranyl reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  639.1   0.4  1.9e-195  4.8e-193       1     398 []      51     450 ..      51     450 .. 0.97

  Alignments for each domain:
  == domain 1    score: 639.1 bits;  conditional E-value: 1.9e-195
   TIGR02028   1 lrvavvgggpagasaaetlaka.giqtfllerkldnakpcggaiplcmvdefdlprdiidrrvtkmkvispsniavdigrtlkeheyigmvrrevldsflreraadagatlinglvlklelpedaddpytlhyveedktgasgtkktlevdavigadgansrvakeidagdydyaiafqerirlpdekmayyedlaemyvgddvspdfygwvfpkcdhvavgtgtvaakdeikklqagiraraaakva.ggkiirveahpipehprprrvvgrvalvgdaagyvtkssgegiyfaaksgrlcaeaiveesrlgkkvieegd.lkkylkrwdkeyrptyrvldllqrvfyrsnaarealvemcadedvqkltfdsylykrvapaepledlkllvktigslvr 398
                 +rvav+gggp+ga+aae +aka   +t l+erk+dn+kpcggaiplcmv+efdlp++i+drrv+kmk+isps  +vd+grtlk++eyigm rrevld +lr+ra + ga+ +nglv ++elp+d +  yt++y +++ +   g     e d++igadgansr ak idag+y+yaiafqeri++pd+km yyedlaemyvgddvspdfy+wvfpk+dhv vgtgtv++++ i ++qa+ir+r+a+k+    k+++veahpipehprprrvvgrvalvgdaagyvtk+sgegiyfaaksgr+ ae iv  s++g ++++e++ +++y+k++d +y+pty+vldllq+vfy +n area+v+mca ++vqk+tfdsylyk+v   +p+ed+kll+ tigsl++
  MMETSP1137-20121227|5719_1  51 IRVAVIGGGPSGACAAEIFAKApNFETTLFERKMDNCKPCGGAIPLCMVEEFDLPPEIVDRRVRKMKMISPSGREVDVGRTLKPEEYIGMTRREVLDGYLRDRAIEYGAKPVNGLVQSIELPTDDSGAYTVKYSDYN-GKGKGVPAEAEFDIIIGADGANSRTAKAIDAGEYNYAIAFQERIKIPDDKMKYYEDLAEMYVGDDVSPDFYAWVFPKYDHVGVGTGTVINRPAIGEYQAAIRERCADKLGpNPKVMKVEAHPIPEHPRPRRVVGRVALVGDAAGYVTKCSGEGIYFAAKSGRMAAEEIVALSQGGTRIPTESEiKQTYIKKYDAKYGPTYLVLDLLQKVFYTNNGAREAFVDMCASDYVQKVTFDSYLYKTVQGNNPVEDVKLLFGTIGSLIK 450
                 69*******************9458**************************************************************************************************************99.4456777789***************************************************************************************************72579****************************************************************998761568*************************************************************************985 PP

>> TIGR02023  BchP-ChlP: geranylgeranyl reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  486.0   0.0  6.5e-149  1.7e-146       2     388 .]      52     450 ..      51     450 .. 0.95

  Alignments for each domain:
  == domain 1    score: 486.0 bits;  conditional E-value: 6.5e-149
   TIGR02023   2 dvlviGggpsGaaaaetLaka.gievillerelarikPCGGaiPlalieefdlPedlidrrvrkakvisPs..aveikvdlpveeeyvgmvrrevfDeyLreraqkaGaeliegllkklerded...kltleyrekekeageekksveadvviGaDGakskvakelglgknlkkvialqeriklpdeklkyyeeladvyldgevsPDfYgWvfPkgdhiavGvGtethktdikkllaalrrkag..l.aggktirreaapiPlkPrkrldservvLvGDaaGlvakasGeGiyyamksGklaaeaivealksg.....datdLrkyekkfmklyktvfrvLrvlqkvyYrsdkrrekfvelCrdkdvqkltfdsYlykklvpasklaqlklalkniaslvr 388
                 +v+viGggpsGa aae+ aka + e+ l+er+++++kPCGGaiPl+++eefdlP +++drrvrk+k+isPs  +v++ ++l+  eey+gm rrev+D yLr+ra + Ga+ ++gl++ +e ++d    +t++y +++ +  +     e d++iGaDGa+s++ak++++g +++++ia+qerik+pd+k+kyye+la++y++++vsPDfY+WvfPk dh+ vG+Gt++++ +i + +aa+r++    l  + k++++ea+piP++Pr+r+  +rv+LvGDaaG+v+k+sGeGiy+a+ksG++aae iv+ ++ g     + +  ++y kk++++y++++ vL++lqkv+Y ++ +re+fv++C   +vqk+tfdsYlyk +  +++++++kl + +i+sl++
  MMETSP1137-20121227|5719_1  52 RVAVIGGGPSGACAAEIFAKApNFETTLFERKMDNCKPCGGAIPLCMVEEFDLPPEIVDRRVRKMKMISPSgrEVDVGRTLK-PEEYIGMTRREVLDGYLRDRAIEYGAKPVNGLVQSIELPTDdsgAYTVKYSDYNGKGKGVPAEAEFDIIIGADGANSRTAKAIDAG-EYNYAIAFQERIKIPDDKMKYYEDLAEMYVGDDVSPDFYAWVFPKYDHVGVGTGTVINRPAIGEYQAAIRERCAdkLgPNPKVMKVEAHPIPEHPRPRRVVGRVALVGDAAGYVTKCSGEGIYFAAKSGRMAAEEIVALSQGGtriptESEIKQTYIKKYDAKYGPTYLVLDLLQKVFYTNNGAREAFVDMCASDYVQKVTFDSYLYKTVQGNNPVEDVKLLFGTIGSLIK 450
                 8******************98689***********************************************8889999***9.99**********************************988777789******997777777777999********************.9**********************************************************************9986641467999*********************************************************88999955666688*************************************************************************986 PP

>> TIGR02032  GG-red-SF: geranylgeranyl reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  170.1   0.1   7.3e-53   1.9e-50       3     297 .]      53     355 ..      52     355 .. 0.82

  Alignments for each domain:
  == domain 1    score: 170.1 bits;  conditional E-value: 7.3e-53
   TIGR02032   3 vvvvGaGpaGssaAlrlakk.GlrVlllekkelprekeCggalskraveelelpkelivnevrkariispngekveieee...eeealvidRkefDelLaekAqeagaelllettvlsveied.......ekvkvevred.ekkevtakivigAdGakskvakklglkkekrelavalraeveeeveeevdedsvevyidkglvpggYgWvfPkgdgtanvGvgvlseekedlkkklkeflaerpeklkd.aeevevkgaliPirradektvtgnvllvGDAAglVkPltGeGIayamvagklAaevv 297
                 v v+G+Gp+G+ aA+  ak+  +++ l+e+k +   k+Cgga++   vee++lp+e +  +vrk ++isp+g++v++ +    ee+  + +R+++D +L ++A e ga+   +     +   d       ++   + +++ +  e + +i+igAdGa+s++ak+++  + ++ +a++ r++++ + ++++ ed +e+y++++++p++Y+WvfPk d+ + vG+g+   +   + ++  +  ++  +kl    + ++v++++iP   ++ ++v g+v lvGDAAg V   +GeGI++a+++g++Aae +
  MMETSP1137-20121227|5719_1  53 VAVIGGGPSGACAAEIFAKApNFETTLFERK-MDNCKPCGGAIPLCMVEEFDLPPEIVDRRVRKMKMISPSGREVDVGRTlkpEEYIGMTRREVLDGYLRDRAIEYGAKPVNGLVQSIELPTDdsgaytvKYSDYNGKGKgVPAEAEFDIIIGADGANSRTAKAIDAGEYNYAIAFQERIKIPDD-KMKYYEDLAEMYVGDDVSPDFYAWVFPKYDH-VGVGTGTVI-NRPAIGEYQAAIRERCADKLGPnPKVMKVEAHPIPEH-PRPRRVVGRVALVGDAAGYVTKCSGEGIYFAAKSGRMAAEEI 355
                 679************99987469*******9.6667********************99999***********9999888888899************************66555444443344686644333333333334555666789****************9999999999999999999.99****************************8.888888875.444444444444444444444325789999999**98.666666777******************************986 PP

>> TIGR01988  Ubi-OHases: ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.3   0.0    0.0016       0.4       2      33 ..      53      84 ..      52     159 .. 0.92
   2 ?    4.0   0.0     0.015       3.8     155     172 ..     200     217 ..     180     225 .. 0.86
   3 !   15.3   0.0   5.6e-06    0.0014     241     358 ..     284     402 ..     281     407 .. 0.91

  Alignments for each domain:
  == domain 1    score: 7.3 bits;  conditional E-value: 0.0016
   TIGR01988  2 ivIvGgGlvGlalAlaLassadlkvalveaka 33
                ++++GgG+ G+  A  +a+ ++ +++l+e+k 
  MMETSP1137-20121227|5719_1 53 VAVIGGGPSGACAAEIFAKAPNFETTLFERKM 84
                89****************999*******9874 PP

  == domain 2    score: 4.0 bits;  conditional E-value: 0.015
   TIGR01988 155 kLlvgADGanSkvrqaag 172
                 ++++gADGanS +++a+ 
  MMETSP1137-20121227|5719_1 200 DIIIGADGANSRTAKAID 217
                 689********9999865 PP

  == domain 3    score: 15.3 bits;  conditional E-value: 5.6e-06
   TIGR01988 241 flaelnaafgsrlgaitlvgeraafPLslthakryvaervaliGdAAhtvhPlAGQGlNlGlrDvaaLaevlaeavergedigslavL.krYererradnaallaatdllnrlfsndfp 358
                 ++a++ +++  +lg    v + +a P+  +   r v  rval+GdAA  v    G G+ +  +  +  ae +++  + g  i + + + + Y ++  a+  +++ ++dll+++f +++ 
  MMETSP1137-20121227|5719_1 284 YQAAIRERCADKLGPNPKVMKVEAHPIPEHPRPRRVVGRVALVGDAAGYVTKCSGEGIYFAAKSGRMAAEEIVALSQGGTRIPTESEIkQTYIKKYDAKYGPTYLVLDLLQKVFYTNNG 402
                 56788899999999999999999999999999***********************************************999877666268***********************98875 PP

>> TIGR01989  COQ6: ubiquinone biosynthesis monooxygenase COQ6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.0   0.1       4.5   1.2e+03       3      23 ..      53      73 ..      53      77 .. 0.75
   2 !    7.2   0.0    0.0018      0.46     168     198 ..     195     223 ..     150     227 .. 0.73
   3 !   14.7   0.0   9.2e-06    0.0024     331     414 ..     319     403 ..     303     411 .. 0.92

  Alignments for each domain:
  == domain 1    score: -4.0 bits;  conditional E-value: 4.5
   TIGR01989  3 vvivGgGlvGlalAaalkknp 23
                v++ GgG+ G+  A  ++k p
  MMETSP1137-20121227|5719_1 53 VAVIGGGPSGACAAEIFAKAP 73
                6899******98776666655 PP

  == domain 2    score: 7.2 bits;  conditional E-value: 0.0018
   TIGR01989 168 etlktklliGADGanSkvRkaanikvtgwnY 198
                  + + +++iGADGanS +     i+   +nY
  MMETSP1137-20121227|5719_1 195 AEAEFDIIIGADGANSRTA--KAIDAGEYNY 223
                 5567789*********665..5677777887 PP

  == domain 3    score: 14.7 bits;  conditional E-value: 9.2e-06
   TIGR01989 331 vtervALvGDAAHrvHPLAGqGvNlGfsDvesLvkalaeavkeGadlGsvssLk.kyererkakNvallalvdklkklYstdfpp 414
                 v  rvALvGDAA  v    G G+    +  ++ ++ + +  + G+ +   s +k  y ++  ak  +  +++d+l+k++ t++++
  MMETSP1137-20121227|5719_1 319 VVGRVALVGDAAGYVTKCSGEGIYFAAKSGRMAAEEIVALSQGGTRIPTESEIKqTYIKKYDAKYGPTYLVLDLLQKVFYTNNGA 403
                 678***********************************999******9888875269999999*****************99876 PP

>> TIGR01317  GOGAT_sm_gam: glutamate synthase, NADH/NADPH, small subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.0   9.5e-08   2.4e-05     145     224 ..      52     136 ..      43     193 .. 0.84

  Alignments for each domain:
  == domain 1    score: 21.2 bits;  conditional E-value: 9.5e-08
   TIGR01317 145 kvavvGsGPaGlaaadqlnraG.htvtvfere.dr...vGGllryG.iPnlkldkeiverridlleaeGvdfvtnveiGkdisaee 224
                 +vav+G GP+G  aa+ +++a   + t+fer+ d    +GG +    + ++ l  eiv+rr+ +++        +v++G+++ +ee
  MMETSP1137-20121227|5719_1  52 RVAVIGGGPSGACAAEIFAKAPnFETTLFERKmDNckpCGGAIPLCmVEEFDLPPEIVDRRVRKMKMISPSG-REVDVGRTLKPEE 136
                 79*******************626899***97444333799887652789*************999765443.4677777777766 PP

>> TIGR01316  gltA: glutamate synthase (NADPH), homotetrameric
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   0.0   1.2e-07     3e-05     134     197 ..      51     120 ..      36     138 .. 0.79

  Alignments for each domain:
  == domain 1    score: 20.8 bits;  conditional E-value: 1.2e-07
   TIGR01316 134 kkvaviGaGpaGlavaselakk.Ghevtvfeal...hkp.GGvla.yGipefrlpkeivetevkklkklG 197
                  +vaviG Gp+G + a+  ak+  +e t+fe      kp GG +    + ef lp eiv+  v+k+k++ 
  MMETSP1137-20121227|5719_1  51 IRVAVIGGGPSGACAAEIFAKApNFETTLFERKmdnCKPcGGAIPlCMVEEFDLPPEIVDRRVRKMKMIS 120
                 69**********8888888998469******74222477566665156789****************985 PP

>> TIGR03315  Se_ygfK: putative selenate reductase, YgfK subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0   8.2e-07   0.00021     538     607 ..      51     129 ..      25     138 .. 0.72

  Alignments for each domain:
  == domain 1    score: 16.7 bits;  conditional E-value: 8.2e-07
   TIGR03315 538 hkvaviGaGPaGlsagyflara.Glpvtvfekkek....agGvvk.niiPefrisaeviqkdl...elvkkkGvefklG 607
                  +vaviG+GP+G +a+ ++a+a   + t+fe+k +     gG +   ++ ef ++ e++++ +   +++   G e+ +G
  MMETSP1137-20121227|5719_1  51 IRVAVIGGGPSGACAAEIFAKApNFETTLFERKMDnckpCGGAIPlCMVEEFDLPPEIVDRRVrkmKMISPSGREVDVG 129
                 48***********9999998883689*****99752222467765257889******9987651115555566666555 PP

>> TIGR01984  UbiH: 2-polyprenyl-6-methoxyphenol 4-hydroxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.0     0.013       3.5       2      33 ..      53      84 ..      52      90 .. 0.91
   2 ?    2.2   0.0     0.052        13     151     171 ..     199     219 ..     180     239 .. 0.80
   3 !    6.5   0.0    0.0027       0.7     238     296 ..     283     341 ..     277     397 .. 0.91

  Alignments for each domain:
  == domain 1    score: 4.2 bits;  conditional E-value: 0.013
   TIGR01984  2 viivGgglvGlslAlaLsrksklkialieaks 33
                v+++Ggg++G+  A  +++  +++++l+e k 
  MMETSP1137-20121227|5719_1 53 VAVIGGGPSGACAAEIFAKAPNFETTLFERKM 84
                89*****************99*******9875 PP

  == domain 2    score: 2.2 bits;  conditional E-value: 0.052
   TIGR01984 151 akLlvaAdGanskvreslsia 171
                  ++++ AdGans+ ++++ + 
  MMETSP1137-20121227|5719_1 199 FDIIIGADGANSRTAKAIDAG 219
                 5799*********99987654 PP

  == domain 3    score: 6.5 bits;  conditional E-value: 0.0027
   TIGR01984 238 eflaeLqkafgerlGkitqvgerkaypLklviaeeqvkervvlignaAqtlhPiAgQGf 296
                 e+ a+++++   +lG   +v + +a+p+  + + + v  rv+l+g+aA  +   +g G+
  MMETSP1137-20121227|5719_1 283 EYQAAIRERCADKLGPNPKVMKVEAHPIPEHPRPRRVVGRVALVGDAAGYVTKCSGEGI 341
                 678889999999999999******************************98877777775 PP

>> TIGR03997  mycofact_OYE_2: mycofactocin system FadH/OYE family oxidoreductase 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.1   1.1e-05    0.0029     371     424 ..      41     100 ..      18     139 .. 0.68

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 1.1e-05
   TIGR03997 371 vtlkkarrr.kkvlvvGgGPaGleaaataa.rrGhrvtllereee....lGGqvklaakl 424
                 +++++a  r  +v v+GgGP+G  aa+  a +   + tl+er+       GG++ l++  
  MMETSP1137-20121227|5719_1  41 AAIQMALDRpIRVAVIGGGPSGACAAEIFAkAPNFETTLFERKMDnckpCGGAIPLCMVE 100
                 455666555589************99876615679******9864222268888877654 PP

>> TIGR00292  TIGR00292: thiazole biosynthesis enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.0   2.8e-05    0.0072      24      55 ..      53      85 ..      40      98 .. 0.87

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 2.8e-05
   TIGR00292 24 viivGaGpsGLtaayylakeg.lkvvvlerkla 55
                v+++G+GpsG  aa ++ak+  + + ++erk+ 
  MMETSP1137-20121227|5719_1 53 VAVIGGGPSGACAAEIFAKAPnFETTLFERKMD 85
                89*****************988********985 PP

>> TIGR01318  gltD_gamma_fam: glutamate synthase, small subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.9   0.0   2.5e-05    0.0064     130     200 ..      39     115 ..      33     139 .. 0.70

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 2.5e-05
   TIGR01318 130 wrpdlskvkktgkrvaviGaGpaGlacadvlara.Gvkvvvfdrype....iGGlltfG.ipsfkldkavlarrrei 200
                  r  +    ++  rvaviG+Gp+G + a+++a+a   ++++f+r  +     GG + +  +  f l  +++ rr + 
  MMETSP1137-20121227|5719_1  39 HRAAIQMALDRPIRVAVIGGGPSGACAAEIFAKApNFETTLFERKMDnckpCGGAIPLCmVEEFDLPPEIVDRRVRK 115
                 5666666777889************99*****993478999998754222256766554245677777777777554 PP

>> TIGR03219  salicylate_mono: salicylate 1-monooxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.5   0.0    0.0024      0.62       1      32 [.      51      82 ..      51      91 .. 0.92
   2 ?   -0.9   0.0       0.4     1e+02     145     164 ..     196     215 ..     192     225 .. 0.82
   3 ?    3.5   0.0     0.019       4.8     295     313 ..     316     334 ..     300     347 .. 0.79

  Alignments for each domain:
  == domain 1    score: 6.5 bits;  conditional E-value: 0.0024
   TIGR03219  1 lrvaiiGGGiaGvalalelsksshlnvklfea 32
                +rva+iGGG +G   a  ++k +  + +lfe 
  MMETSP1137-20121227|5719_1 51 IRVAVIGGGPSGACAAEIFAKAPNFETTLFER 82
                79**********99999999**********95 PP

  == domain 2    score: -0.9 bits;  conditional E-value: 0.4
   TIGR03219 145 eyradlligadGiksalrdy 164
                 e++ d++igadG +s + + 
  MMETSP1137-20121227|5719_1 196 EAEFDIIIGADGANSRTAKA 215
                 6789*********9987665 PP

  == domain 3    score: 3.5 bits;  conditional E-value: 0.019
   TIGR03219 295 pgyvhGrvaliGdaahaml 313
                 p  v Grval+Gdaa  + 
  MMETSP1137-20121227|5719_1 316 PRRVVGRVALVGDAAGYVT 334
                 67789*********97655 PP

>> TIGR01292  TRX_reduct: thioredoxin-disulfide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00013     0.032       2      35 ..      52      86 ..      51     103 .. 0.85
   2 ?   -4.0   0.1       4.1   1.1e+03     270     296 ..     329     355 ..     329     356 .. 0.85

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 0.00013
   TIGR01292  2 dviiiGaGpaGltaa.iYaaranlktlliegkeag 35
                +v++iG+Gp+G  aa i+a+  n++t l+e+k+ +
  MMETSP1137-20121227|5719_1 52 RVAVIGGGPSGACAAeIFAKAPNFETTLFERKMDN 86
                689********987769*************98765 PP

  == domain 2    score: -4.0 bits;  conditional E-value: 4.1
   TIGR01292 270 aaGDvrdkslrQvvtaagdGaiAalsv 296
                 aaG v++ s + +  aa +G +Aa ++
  MMETSP1137-20121227|5719_1 329 AAGYVTKCSGEGIYFAAKSGRMAAEEI 355
                 788899989999999999999999875 PP

>> TIGR00562  proto_IX_ox: protoporphyrinogen oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   9.3e-05     0.024       4      36 ..      52      83 ..      50      98 .. 0.89

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 9.3e-05
   TIGR00562  4 kvvvvGgGisGLciayalekerpdvelvlvEak 36
                 v+v+GgG sG c+a  ++k  p+ e +l+E k
  MMETSP1137-20121227|5719_1 52 RVAVIGGGPSGACAAEIFAKA-PNFETTLFERK 83
                59*****************99.*********86 PP

>> TIGR00275  TIGR00275: flavoprotein, HI0933 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00012     0.031       1      30 [.      53      83 ..      53      88 .. 0.85

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 0.00012
   TIGR00275  1 viiiGgGaaGlmaAitaae.egakVlllEkn 30
                v++iGgG++G  aA   a+  + + +l+E++
  MMETSP1137-20121227|5719_1 53 VAVIGGGPSGACAAEIFAKaPNFETTLFERK 83
                79************87777589999999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (471 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       143  (0.034861); expected 82.0 (0.02)
Passed bias filter:                      134  (0.032667); expected 82.0 (0.02)
Passed Vit filter:                        37  (0.00901999); expected 4.1 (0.001)
Passed Fwd filter:                        16  (0.00390054); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              16  [number of targets reported over threshold]
# CPU time: 0.49u 0.16s 00:00:00.65 Elapsed: 00:00:00.60
# Mc/sec: 1036.11
//
Query:       MMETSP1137-20121227|5720_1  [L=60]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        25  (0.00609459); expected 82.0 (0.02)
Passed bias filter:                       22  (0.00536324); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.15s 00:00:00.27 Elapsed: 00:00:00.25
# Mc/sec: 316.77
//
Query:       MMETSP1137-20121227|5721_1  [L=229]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (229 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        84  (0.0204778); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.14s 00:00:00.35 Elapsed: 00:00:00.28
# Mc/sec: 1042.26
//
Query:       MMETSP1137-20121227|5722_1  [L=493]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.4e-12   42.7   0.2    4.6e-12   42.3   0.1    1.0  1  TIGR04121 DEXH_lig_assoc: DEXH box helicase, DNA ligase-associated
      1e-10   38.3   0.4    7.3e-10   35.5   0.3    1.9  1  TIGR03817 DECH_helic: helicase/secretion neighborhood putative DEAH-box helicase
    1.8e-08   31.1   0.1    9.2e-07   25.5   0.0    2.3  3  TIGR01389 recQ: ATP-dependent DNA helicase RecQ
    2.2e-07   27.8   0.0    0.00011   19.0   0.0    2.1  2  TIGR00614 recQ_fam: ATP-dependent DNA helicase, RecQ family
    7.6e-07   26.0   0.1    1.7e-05   21.5   0.0    2.7  3  TIGR00643 recG: ATP-dependent DNA helicase RecG
    0.00035   16.8   0.0     0.0042   13.3   0.0    2.1  2  TIGR00580 mfd: transcription-repair coupling factor
  ------ inclusion threshold ------
      0.013   12.4   0.0       0.62    6.9   0.0    2.1  2  TIGR01587 cas3_core: CRISPR-associated helicase Cas3
      0.017   12.0   0.0       0.13    9.1   0.0    2.0  2  TIGR04095 dnd_restrict_1: DNA phosphorothioation system restriction enzyme


Domain annotation for each model (and alignments):
>> TIGR04121  DEXH_lig_assoc: DEXH box helicase, DNA ligase-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.3   0.1     9e-15   4.6e-12      14     348 ..      99     455 ..      96     474 .. 0.83

  Alignments for each domain:
  == domain 1    score: 42.3 bits;  conditional E-value: 9e-15
   TIGR04121  14 prafQkevleaaeegesglliapTGaGKTlavflpsliela................akekpk.....kglkvlyitPLkaLakdieraleapieelgl.eirvelrtGDt..ssserarqrkkppdiLltTpEslaLllsskdaeklfkdlravvvDElHeLl.gskRGdlleLaLarL.rrlapelrvvglsATvgnleeaaevllgeekeekaklvkakekkalevesllpeeeeklPw.aGhlglkaleevleeik....karttlvFtNtRsqaEllfqaLleaneelaleialhHgsldkeqRekveaalkagklravvcTssLdLGvDfgdvdlviqvGspkgvaRllQRiGRsnHrld 348
                 p + Q  vl  a eg++ l++a TG+GKT    lp+   l+                +    +        ++l ++P   La++ +r + + +++l   +i+      D   s+++  r ++++ +iL tTp    +l + +d +     lr+v  DE+ +Ll g+     + La + L ++l  + + v l  T ++l ea+e++l+ +   +a+lv+ + + +     l+p+  +++ + +G    ++l +++++      ++ t+ vF+     aE l   + +a ++  l   + H+ + +++R    + ++ g+ r++vcT+    G+D   +  v+       va ++  +GR++ r  
  MMETSP1137-20121227|5722_1  99 PNEIQASVLPLALEGRELLVVAQTGSGKTIISLLPIFHCLLrqslgdtfsrstkratE----TssptpMQPQALVLSPTIELASQHSRVIAQLAQALPErHISSMPDIADQldSQTQEGREEEDQSRILSTTPSR--FLRAFRDGRVQTGLLRVVAFDEVDALLcGEAHSREMPLAATELlEALLSAGQPVQLLMTTAHLTEAHEHVLRGRF-PRAELVRHQGSDSGXRGVLVPTLRQRFHYfNGDKEQQLLRTLARAEAdphlREGTCAVFCASEPDAEKLCALVASAAPQ--LLPTVLHARMPDAARLAALDRFRLGESRVLVCTACAARGLDLPLLRHVVLYDPTPEVADFVHSAGRTARRGT 455
                 6778999999**********************99998888788899*99998765431....12343466799**************99999998885413444334455411566667888999********86..68888999999999***********8736778889999988752678888999**************99998887.899*****999999999*****99**986489998888888876543222256899**************999999999..66677899**********************************************************987755 PP

>> TIGR03817  DECH_helic: helicase/secretion neighborhood putative DEAH-box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.5   0.3   1.4e-12   7.3e-10      18     382 ..      80     462 ..      65     471 .. 0.71

  Alignments for each domain:
  == domain 1    score: 35.5 bits;  conditional E-value: 1.4e-12
   TIGR03817  18 PawvepdvvaaleaaGieapwqhqaraaelahaGehvvvatgtasGkslayllPvlsalaed..........p...........ratalylaPtkalaadqlravkelee.......rdvraatyd.GdtpaeerewirekaryvltnPdmlhlgilpsharWakflralryvvvdechsy.rG.vfGshvalvlrrlrrlcaryGaePvfllasatsadpaaaasrliGleveavtedgsPrgartvvlwePalle....legengapvrrsasaeaadlladlvaegvrtltfvrsrrgaevvaleakerlaevdaelaervaayraGylaedrreleralkdGellgvaatnalelGvdisGldavviaGfPGtvaslwqqaGraGrrgqdalvvlv 382
                  + +  ++ +al++ Gi +p + qa++  la +G++  v + t sGk++  llP++  l ++          +           + +al l+Pt  la+   r++ +l +       +   + + d  d++++e +   +++r++ t P  + ++  ++ +  + +lr +++   de+ +   G     ++ l    l+      G+   +l+++a  +++ ++  r      e v + gs  g r v++  P+l +    ++g++  ++ r+     a+  ad    +    +f +s   ae +++    ++a+++++l   v   r       r +  ++++ Ge + +++t     G+d+  l  vv+      va +   aGr+ rrg + lv+ +
  MMETSP1137-20121227|5722_1  80 EDILGSKLPKALATIGILSPNEIQASVLPLALEGRELLVVAQTGSGKTIISLLPIFHCLLRQslgdtfsrstKratetssptpmQPQALVLSPTIELASQHSRVIAQLAQalperhiS-SMPDIADqLDSQTQEGREEEDQSRILSTTPSRFLRAF-RDGRVQTGLLRVVAF---DEVDALlCGeAHSREMPLAATELLEALLSAGQPVQLLMTTAHLTEAHEHVLRGRFPRAELVRHQGSDSGXRGVLV--PTLRQrfhyFNGDKEQQLLRT----LARAEADPHLREGTCAVFCASEPDAEKLCA----LVASAAPQLLPTVLHARMP--DAARLAALDRFRLGESRVLVCTACAARGLDLPLLRHVVLYDPTPEVADFVHSAGRTARRGTHGLVTCL 462
                 55666788899************************************************9996666666555055666666777999*********************9999885532.334444425899999999999********98776654.455555666665555...444433123123334444445555555555544445566677777777666666667888999999999998876..666554333445444444444....444455555556667789999999998765....4555666666666655532..33455666778889999999999999999999999999998888999999999999999999988644 PP

>> TIGR01389  recQ: ATP-dependent DNA helicase RecQ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.0     0.011       5.7      17      48 ..     102     133 ..      93     145 .. 0.84
   2 ?   -3.8   0.0       1.3   6.6e+02      93     135 ..     209     251 ..     166     253 .. 0.55
   3 !   25.5   0.0   1.8e-09   9.2e-07     225     333 ..     358     468 ..     328     479 .. 0.84

  Alignments for each domain:
  == domain 1    score: 3.0 bits;  conditional E-value: 0.011
   TIGR01389  17 gqeeiieevldgrdvlavlPtGGGkslCYqvP 48 
                  q++++   l+gr++l+v  tG Gk +   +P
  MMETSP1137-20121227|5722_1 102 IQASVLPLALEGRELLVVAQTGSGKTIISLLP 133
                 688999999*****************987777 PP

  == domain 2    score: -3.8 bits;  conditional E-value: 1.3
   TIGR01389  93 qeilkalaagelklLYvaPerleqdkflellerlkiallavDe 135
                 q  + + ++ + ++L  +P r++++    +++   + ++a+De
  MMETSP1137-20121227|5722_1 209 QTQEGREEEDQSRILSTTPSRFLRAFRDGRVQTGLLRVVAFDE 251
                 2333344556677788888888777666777777778888887 PP

  == domain 3    score: 25.5 bits;  conditional E-value: 1.8e-09
   TIGR01389 225 ksGiiYassRkkveelaeaLeskg..iealaYhaGlskkvRaeaqekFleddvkvvvatvaFGmGidksdvRfvihldlPknlesyyqeaGRaGRDGlkaeaillyseaDl 333
                  +  ++++s  + e+l + + s    +  +  ha + ++ R  a+++F   + +v+v t     G+d +  R+v+ +d   ++  +   aGR  R G +     l +  D 
  MMETSP1137-20121227|5722_1 358 GTCAVFCASEPDAEKLCALVASAApqLLPTVLHARMPDAARLAALDRFRLGESRVLVCTACAARGLDLPLLRHVVLYDPTPEVADFVHSAGRTARRGTHGLVTCLVQAGDA 468
                 455799**********9999887511455679*****************************************************************98766666666665 PP

>> TIGR00614  recQ_fam: ATP-dependent DNA helicase, RecQ family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.7   0.0    0.0011      0.58      14      42 ..     101     129 ..      92     138 .. 0.85
   2 !   19.0   0.0   2.1e-07   0.00011     223     338 ..     354     471 ..     325     481 .. 0.84

  Alignments for each domain:
  == domain 1    score: 6.7 bits;  conditional E-value: 0.0011
   TIGR00614  14 pvqlevinavlegrdalvvmatGgGksLC 42 
                 + q  v+  +legr+ lvv  tG Gk + 
  MMETSP1137-20121227|5722_1 101 EIQASVLPLALEGRELLVVAQTGSGKTII 129
                 67999999******************876 PP

  == domain 2    score: 19.0 bits;  conditional E-value: 2.1e-07
   TIGR00614 223 efkgksGiiYClsrkkveqvaaeLqkk..glaaaaYhagleesarkevqkkflrdeiqvvvatvafGmGinkpdvRfvihyslpksiesYYqesGRaGRDglksecvlfyapaDvall 338
                 + +  +  ++C s  ++e++ a + +    l  +  ha + ++ar     +f   e +v+v t     G++ p +R+v+ y+ + ++  +   +GR  R g +   + + + +D a l
  MMETSP1137-20121227|5722_1 354 HLREGTCAVFCASEPDAEKLCALVASAapQLLPTVLHARMPDAARLAALDRFRLGESRVLVCTACAARGLDLPLLRHVVLYDPTPEVADFVHSAGRTARRGTHGLVTCLVQAGDAAAL 471
                 445556799***********998877622688899******************************************************************99988888888887665 PP

>> TIGR00643  recG: ATP-dependent DNA helicase RecG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.0   0.0      0.11        57     260     279 ..     117     136 ..     113     141 .. 0.83
   2 ?   -0.4   0.1      0.15        77     286     308 ..     166     188 ..     162     207 .. 0.87
   3 !   21.5   0.0   3.4e-08   1.7e-05     468     535 ..     369     436 ..     365     479 .. 0.85

  Alignments for each domain:
  == domain 1    score: -0.0 bits;  conditional E-value: 0.11
   TIGR00643 260 LlqGdVGsGKTvVavlalla 279
                 L+  + GsGKT++ +l +++
  MMETSP1137-20121227|5722_1 117 LVVAQTGSGKTIISLLPIFH 136
                 677789********998876 PP

  == domain 2    score: -0.4 bits;  conditional E-value: 0.15
   TIGR00643 286 qvalmaPTeiLAeQhyeklrell 308
                 q++++ PT  LA+Qh + +++l 
  MMETSP1137-20121227|5722_1 166 QALVLSPTIELASQHSRVIAQLA 188
                 8999***********99888775 PP

  == domain 3    score: 21.5 bits;  conditional E-value: 3.4e-08
   TIGR00643 468 aaealleelkkafpklnvallhgrlksdekeevleeFrekevdiLvaTtviEvGvdvPnatvmvieda 535
                 +ae+l+  + +a p+l   +lh+r++++ + ++l +Fr +e  +Lv+T     G+d+P +  +v++d+
  MMETSP1137-20121227|5722_1 369 DAEKLCALVASAAPQLLPTVLHARMPDAARLAALDRFRLGESRVLVCTACAARGLDLPLLRHVVLYDP 436
                 5888899999999*********************************************9999999887 PP

>> TIGR00580  mfd: transcription-repair coupling factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.1     0.043        22     499     520 ..     165     186 ..     160     198 .. 0.85
   2 !   13.3   0.0   8.1e-06    0.0042     638     728 ..     334     427 ..     323     457 .. 0.84

  Alignments for each domain:
  == domain 1    score: 0.9 bits;  conditional E-value: 0.043
   TIGR00580 499 kQvavlvPTTlLaeQHfetlke 520
                  Q  vl+PT  La+QH + + +
  MMETSP1137-20121227|5722_1 165 PQALVLSPTIELASQHSRVIAQ 186
                 799*************887765 PP

  == domain 2    score: 13.3 bits;  conditional E-value: 8.1e-06
   TIGR00580 638 fvkeyddelvkeairrE...llRgGqvfyvhnriesieklkeqlrelvPeariaiaHgqmeeeeleevmleFlkkefdvLvcTtiiEsGidipn 728
                 f  +++++l+++  r E   +lR+G   +      + ekl + +++  P++  ++ H++m +      + +F  +e+ vLvcT+    G+d+p 
  MMETSP1137-20121227|5722_1 334 FNGDKEQQLLRTLARAEadpHLREGTCAVFCASEPDAEKLCALVASAAPQLLPTVLHARMPDAARLAALDRFRLGESRVLVCTACAARGLDLPL 427
                 555666777777766663335688888777777788899999999999****************99*************************995 PP

>> TIGR01587  cas3_core: CRISPR-associated helicase Cas3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.0     0.013       6.4       2      22 ..     116     136 ..     115     149 .. 0.82
   2 ?    6.9   0.0    0.0012      0.62     127     294 ..     246     425 ..     177     454 .. 0.77

  Alignments for each domain:
  == domain 1    score: 3.6 bits;  conditional E-value: 0.013
   TIGR01587   2 lvieAPtGyGKteaallwalk 22 
                 l+++A tG+GKt ++ll   +
  MMETSP1137-20121227|5722_1 116 LLVVAQTGSGKTIISLLPIFH 136
                 6899***********987666 PP

  == domain 2    score: 6.9 bits;  conditional E-value: 0.0012
   TIGR01587 127 vliiDEvhay......eeytkalllallevlkdvdvki.llm.sAtlp....kllkeylekielveenealdlke....ekrfenqrisliekd.kleeisslerl.lealkkekkvliivNtVdrAqelyqklkekapeeeiiLlHsrftekdrekkEaellkelkknekfvivaTQviEvslDi 294
                 v+ +DEv+a+        ++   +  lle+l   ++++ llm +A l       l+  ++  elv  ++  d        +   +qr+   + d  ++ +++l r   +    e+  ++++ +  +A +l   +   ap++   +lH+r+    r       l +++  e++v+v T  +  +lD+
  MMETSP1137-20121227|5722_1 246 VVAFDEVDALlcgeahSREMPLAATELLEALLSAGQPVqLLMtTAHLTeaheHVLRGRFPRAELV-RHQGSDSGXrgvlVP-TLRQRFHYFNGDkEQQLLRTLARAeADPHLREGTCAVFCASEPDAEKLCALVASAAPQLLPTVLHARMPDAARLAA----LDRFRLGESRVLVCTACAARGLDL 425
                 56788888873332112233333666888888888887344424666666666666666666666.333333333688633.3366665555440455578888888888999999***********************99999******98877665....9**************999999997 PP

>> TIGR04095  dnd_restrict_1: DNA phosphorothioation system restriction enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.0      0.15        75      24      45 ..     112     134 ..     106     148 .. 0.80
   2 ?    9.1   0.0   0.00024      0.13     322     383 ..     392     453 ..     380     458 .. 0.91

  Alignments for each domain:
  == domain 1    score: -0.1 bits;  conditional E-value: 0.15
   TIGR04095  24 ngrGilkma.tGtGktltaLalv 45 
                 +gr +l +a tG+Gkt+  L  +
  MMETSP1137-20121227|5722_1 112 EGRELLVVAqTGSGKTIISLLPI 134
                 57777777669******998755 PP

  == domain 2    score: 9.1 bits;  conditional E-value: 0.00024
   TIGR04095 322 eeskeeReellkqfesgelqalvairCLDeGvDvPairtayiLasssnPrqFiqRRGRvLRk 383
                 + + + R   l +f  ge  +lv   C   G+D+P +r+ ++   +    +F+   GR  R+
  MMETSP1137-20121227|5722_1 392 RMPDAARLAALDRFRLGESRVLVCTACAARGLDLPLLRHVVLYDPTPEVADFVHSAGRTARR 453
                 556678888999**********************************************9886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (493 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       126  (0.0307167); expected 82.0 (0.02)
Passed bias filter:                      103  (0.0251097); expected 82.0 (0.02)
Passed Vit filter:                        24  (0.0058508); expected 4.1 (0.001)
Passed Fwd filter:                         8  (0.00195027); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.52u 0.20s 00:00:00.72 Elapsed: 00:00:00.51
# Mc/sec: 1275.89
//
Query:       MMETSP1137-20121227|5723_1  [L=381]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (381 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        83  (0.020234); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.13s 00:00:00.39 Elapsed: 00:00:00.41
# Mc/sec: 1226.53
//
Query:       MMETSP1137-20121227|5724_1  [L=294]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (294 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        42  (0.0102389); expected 82.0 (0.02)
Passed bias filter:                       36  (0.00877621); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.13s 00:00:00.36 Elapsed: 00:00:00.38
# Mc/sec: 1021.18
//
Query:       MMETSP1137-20121227|5725_1  [L=443]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.7e-19   64.9   0.1    1.5e-18   64.0   0.0    1.4  2  TIGR03903 TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
    9.2e-09   32.9   0.1    1.8e-08   31.9   0.1    1.4  1  TIGR03724 arch_bud32: Kae1-associated kinase Bud32


Domain annotation for each model (and alignments):
>> TIGR03903  TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.0   0.0   7.1e-22   1.5e-18       2     196 ..      94     280 ..      93     289 .. 0.90
   2 ?   -4.2   0.0      0.27   5.5e+02     784     826 ..     384     426 ..     384     429 .. 0.87

  Alignments for each domain:
  == domain 1    score: 64.0 bits;  conditional E-value: 7.1e-22
   TIGR03903   2 tghkvaikllRedaaeeerlvaRFrReialCarLshPnivaLlDsGeaedgllFavFeyveGrtlrevLaadGaLpaaetgrLmlqvLDalaaahdaGvvhRDLkPqnimvsaadveshakvLDFGigaLlpgvedadeatltrttevlGsPaYaaPeqLRgepvt.aksDlYaWGLivleCLtGkrvvqGasvae 196
                 tg+ va+k+l +       +va  + e++l ++ +h ++++L  + + ed   F v e+ e   l  ++  +G L   e     +q++ al   h +G+ hRDLk +n+++ a+    + k+ DFG++    ++++  ++  t   ++ Gs +YaaPe L g      ++D+++ G+ ++  L G   ++Ga   +
  MMETSP1137-20121227|5725_1  94 TGKPVAVKVLSHG----RMRVAAIQHEVKLMQNARHKHVIELYXHIQQED-KSFLVMELAEHGELFSRVIDKGNLDEPEAKVYFAQIMGALDFLHGRGIAHRDLKLENVLLDAQ---DNCKICDFGLAH-QYDFDASGKMIKTTLRDICGSKSYAAPEVLAGRGYDgFATDVWSCGICLFAMLAGFFPLDGANASD 280
                 89999****9887....556899*********************999988.89********999**********************************************9665...589*******76.6789998899999999**************9998751588**************999999987765 PP

  == domain 2    score: -4.2 bits;  conditional E-value: 0.27
   TIGR03903 784 aatlGrevdaelLadassrdeaeldesLraLvdarllyaqdrv 826
                 a tlG+++++++L+d s  + a + ++ + ++d   l +q+++
  MMETSP1137-20121227|5725_1 384 ANTLGLQMSMDILEDESFAPVAPVYRTAQLMADMPPLTRQRAR 426
                 6799**************9999999999999999888888765 PP

>> TIGR03724  arch_bud32: Kae1-associated kinase Bud32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.9   0.1     9e-12   1.8e-08      38     139 ..     107     216 ..     101     243 .. 0.86

  Alignments for each domain:
  == domain 1    score: 31.9 bits;  conditional E-value: 9e-12
   TIGR03724  38 klrkeRtrkEarllseakkagvntPvvydvdpeekkivmeyie.gkklkdlleekel......ellkevGelvgklHkagivhgDlttsNiiv.kddklyliDfGLgkks 139
                 ++r    ++E++l+++a+++ v   +    +++++ +vme  e g+ ++ ++++ +l       ++ ++  ++  lH  gi+h Dl  +N+++  +d++ + DfGL+++ 
  MMETSP1137-20121227|5725_1 107 RMRVAAIQHEVKLMQNARHKHVIELYXHIQQEDKSFLVMELAEhGELFSRVIDKGNLdepeakVYFAQIMGALDFLHGRGIAHRDLKLENVLLdAQDNCKICDFGLAHQY 216
                 567777899************999999999999999****98637788899999887899887778888888999******************447888899*****874 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (443 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        99  (0.0241346); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.34u 0.19s 00:00:00.53 Elapsed: 00:00:00.57
# Mc/sec: 1008.12
//
Query:       MMETSP1137-20121227|5726_1  [L=470]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (470 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       172  (0.0419308); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.13s 00:00:00.46 Elapsed: 00:00:00.48
# Mc/sec: 1292.39
//
Query:       MMETSP1137-20121227|5728_1  [L=470]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (470 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        97  (0.023647); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.16s 00:00:00.50 Elapsed: 00:00:00.30
# Mc/sec: 2067.83
//
Query:       MMETSP1137-20121227|5729_1  [L=235]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-05   22.7   0.2      2e-05   22.2   0.1    1.2  1  TIGR01130 ER_PDI_fam: protein disulfide isomerases
    0.00041   18.4   0.1     0.0021   16.2   0.0    2.0  2  TIGR01126 pdi_dom: protein disulfide-isomerase domain


Domain annotation for each model (and alignments):
>> TIGR01130  ER_PDI_fam: protein disulfide isomerases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.2   0.1   9.6e-09     2e-05       3     171 ..      25     209 ..      23     233 .. 0.60

  Alignments for each domain:
  == domain 1    score: 22.2 bits;  conditional E-value: 9.6e-09
   TIGR01130   3 vleltkenfddlikenelvLveF...YAPWCGHCksLaPeYekAAeelkkk..spkvklakvDateekelaqkygvs..GyPtLkifrnge....sssdYnGpReaegivkylkkqsgPask...eletvedl.ekllekkevvvvgvfkd.....ldselvetflevaeklrdkfkavasssdeaalk 171
                 +l+l + +fd +i  +  v v+F   YA   G       eY+k+  e +++  s++v + +    e+++l ++yg++   +P  ++f +g+    s+  Y+G+ +++++v+++++++g       ++++++++ ++++ ++e + +   ++     + +++++ + +v  k++ + ++va+++  + lk
  MMETSP1137-20121227|5729_1  25 ILKLDNTTFDRIIDGSRNVFVRFdkeYAY--GEAHDAWKEYAKTVGESAADllSADVGVSEYGEKENSDLIERYGIKtaDFPQYRLFVKGTsglgSPIAYTGAAKTDEFVRFVQEKAGAWIGlpgQIKELDEIaKEFMGSTEQAALLQKAEaaaasSTQDTAKYYVKVMTKATGDKDFVAKETT-R-LK 209
                 67888888888888888888888666664..666666667765433322221133478888888999*********7557*********998888899******************99655411135555553145665533333322221011113344444555555555544444443222.1.22 PP

>> TIGR01126  pdi_dom: protein disulfide-isomerase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0     1e-06    0.0021       4     104 ..      31     138 ..      28     139 .. 0.72
   2 ?   -0.1   0.0      0.12   2.5e+02      36      65 ..     152     182 ..     142     215 .. 0.61

  Alignments for each domain:
  == domain 1    score: 16.2 bits;  conditional E-value: 1e-06
   TIGR01126   4 enfdelvldenkdvlvef...yaPWCGh..CkklaPeyeklakelkkeeekvkiakvdataekelaskfkvsg..fPtlkffkkgkke...pvdyeGeReaeelvefveek 104
                  +fd ++   +++v+v+f   ya    h   k+ a +  + a++l +   +v +++   +++++l +++++++  fP  ++f kg++    p+ y+G+ +++e+v fv+ek
  MMETSP1137-20121227|5729_1  31 TTFDRIID-GSRNVFVRFdkeYAYGEAHdaWKEYAKTVGESAADLLS--ADVGVSEYGEKENSDLIERYGIKTadFPQYRLFVKGTSGlgsPIAYTGAAKTDEFVRFVQEK 138
                 66777766.78888888844444333342235555555555555554..369999999999*********98555*******9998744449*****************98 PP

  == domain 2    score: -0.1 bits;  conditional E-value: 0.12
   TIGR01126  36 yeklakelkkeeek.vkiakvdataekelas 65 
                  +++ake+  ++e+   + k +a a +++++
  MMETSP1137-20121227|5729_1 152 LDEIAKEFMGSTEQaALLQKAEAAAASSTQD 182
                 5778888876655414455555555443332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (235 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       207  (0.0504632); expected 82.0 (0.02)
Passed bias filter:                      125  (0.0304729); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.24u 0.14s 00:00:00.38 Elapsed: 00:00:01.31
# Mc/sec: 236.77
//
Query:       MMETSP1137-20121227|5730_1  [L=582]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (582 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       190  (0.0463189); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.16s 00:00:00.54 Elapsed: 00:00:00.52
# Mc/sec: 1477.26
//
Query:       MMETSP1137-20121227|5731_1  [L=456]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (456 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        88  (0.0214529); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.16s 00:00:00.46 Elapsed: 00:00:00.79
# Mc/sec: 761.86
//
Query:       MMETSP1137-20121227|5732_1  [L=454]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (454 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        62  (0.0151146); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.15s 00:00:00.43 Elapsed: 00:00:00.47
# Mc/sec: 1274.96
//
Query:       MMETSP1137-20121227|5733_1  [L=485]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   8.2e-148  490.7   0.3   9.6e-148  490.5   0.2    1.0  1  TIGR03680 eif2g_arch: translation initiation factor 2, gamma subunit
    3.3e-29   99.8   0.4    3.6e-17   60.1   0.0    3.1  3  TIGR00475 selB: selenocysteine-specific translation elongation factor
    4.5e-23   79.4   2.9    3.6e-22   76.5   2.0    2.0  1  TIGR00485 EF-Tu: translation elongation factor Tu
    3.3e-15   53.3   2.7    4.3e-14   49.6   1.8    2.2  1  TIGR00483 EF-1_alpha: translation elongation factor EF-1, subunit alpha
    5.6e-09   33.8   0.2    0.00062   17.4   0.0    2.2  2  TIGR00231 small_GTP: small GTP-binding protein domain
    1.3e-08   32.1   0.6    3.7e-08   30.7   0.1    2.0  2  TIGR02034 CysN: sulfate adenylyltransferase, large subunit
    7.8e-07   25.6   0.7    2.1e-05   20.9   0.0    2.0  2  TIGR01393 lepA: GTP-binding protein LepA
    9.3e-07   25.4   1.4    2.6e-05   20.6   0.0    2.4  3  TIGR00491 aIF-2: translation initiation factor aIF-2
    1.7e-06   24.9   2.0    4.7e-05   20.1   0.4    2.4  2  TIGR00487 IF-2: translation initiation factor IF-2
    3.3e-05   20.9   0.7     0.0057   13.5   0.0    2.1  2  TIGR03594 GTPase_EngA: ribosome-associated GTPase EngA
     0.0045   13.1   1.5        0.4    6.6   0.1    2.7  2  TIGR01394 TypA_BipA: GTP-binding protein TypA/BipA


Domain annotation for each model (and alignments):
>> TIGR03680  eif2g_arch: translation initiation factor 2, gamma subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  490.5   0.2  2.6e-150  9.6e-148       2     407 .]      50     468 ..      49     468 .. 0.94

  Alignments for each domain:
  == domain 1    score: 490.5 bits;  conditional E-value: 2.6e-150
   TIGR03680   2 kqpevniglvGhvDhGkttlvkaltGvwtdthseelkrgisiklGyadaeikkc..eeceepeaytteekcee.cgsete....llrkvsfvDaPGhetLmatmlsGaalmdgalLviaaneevPqpqtkehlvaleiigiknivivqnkidlvskekalenyeeikefvkgtvaenapiiPvsalkkvnidvllealekeiptperdldkdalllvarsfdvnkPGteieklkGGviGGslvqGklkvgdeieirPGikvek.egkteyepiltevtsleagkkkveeakPgGlvavgtkLDPaltkaDalaGqvvgkpgklppvreklelevkllervvGte.....eeekvepikkkevllltvgtattvgvvtsakkdeievkLkkpvvaeegdrvaisrrvksrWrligyGvik 407
                 +q+++nig++Ghv hGk+t+vka++Gv t ++++ l r i+iklGya+a+i++c  ++c +p ++ t+ +++e    + +    l+r+vsfvD+PGh++Lmatml Gaa+md+alL ia ne++Pqpqt ehl+a+ei+  ++i+  qnkidlv++  al+++e+i++fvkgtva+ api+P+sa+ + nidv+ e++++ ip p rd + +++++v+rsfdvnkPG e+e+l+GGv GGs++qG+l+ g+eieirPGi  +  +g+++ +p+ ++++sl a ++ ++ a PgGl++vgt LDP+lt+aD+l+Gqv+g++g+lp++ +++e+++ ll r +G++     ++ kv+++ k+e l+l++g++ t g ++++k d ++++L  pv+++eg+++a+srr+++ Wrlig+G i+
  MMETSP1137-20121227|5733_1  50 RQATINIGTIGHVAHGKSTVVKAISGVQTVRFKNXLERNITIKLGYANAKIYQCkdPSCPRPGNFLTRGSSTEdSVVQGKwtydLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNEPCPQPQTSEHLAAVEIMKLQHIIXLQNKIDLVKEAAALQQFEDIRAFVKGTVADSAPIVPISAQLRYNIDVVAEYITNSIPVPVRDFTGQPKMIVIRSFDVNKPGQEVEELRGGVAGGSILQGVLRRGQEIEIRPGIISRGaSGSVKCVPLFSRIVSLFAEQNDLQYAVPGGLIGVGTLLDPTLTRADRLVGQVLGSVGHLPDIFTEIEVSYYLLRRLLGVKtadgeKAGKVQKLAKGEILMLNIGSTSTGGRIQAVKADLAKIALTAPVCTAEGEKIALSRRIEKHWRLIGWGEIR 468
                 699***************************************************66678888888776655441222222333499****************************************************************************************************************************************************************************98776599****************************************************************************86222214569***************************************************************885 PP

>> TIGR00475  selB: selenocysteine-specific translation elongation factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.9   0.0   3.4e-11   1.3e-08       1      46 [.      54      99 ..      54     106 .. 0.94
   2 !   60.1   0.0   9.8e-20   3.6e-17      46     213 ..     131     306 ..     128     312 .. 0.84
   3 !    4.4   0.0     0.007       2.6     276     322 ..     405     451 ..     399     461 .. 0.90

  Alignments for each domain:
  == domain 1    score: 31.9 bits;  conditional E-value: 3.4e-11
   TIGR00475  1 viiataGHvDHGKttLlkaltgidadrlPeEkKRGltiDlGyaylp 46
                ++i+t GHv HGK t++ka+ g+++ r  +   R +ti lGya  +
  MMETSP1137-20121227|5733_1 54 INIGTIGHVAHGKSTVVKAISGVQTVRFKNXLERNITIKLGYANAK 99
                68****************************************9765 PP

  == domain 2    score: 60.1 bits;  conditional E-value: 9.8e-20
   TIGR00475  46 pled.kvlgliDvPGHekflknalagvggidaalLvvdade.GvkaqtkEHLavlkllgikelivvltKaDrvdeeevkevEeelkeileeeeflknakivkvsAktGqGieeLkkelknLlesldakdkqkplrlaiDraFkvKG........aGtvvtGtafsGevkvgDelvlep 213
                 +++  + + ++D PGH+ ++ ++l g + +daalL+++ +e  +++qt EHLa ++ ++++++i   +K+D v e+ + +  e ++++ + +     a iv +sA+    i+ + +++ n       +d   + ++ + r F v           G v  G++++G  + g e+ + p
  MMETSP1137-20121227|5733_1 131 TYDLvRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNEpCPQPQTSEHLAAVEIMKLQHIIXLQNKIDLVKEAAALQQFEDIRAFVKGTVAD-SAPIVPISAQLRYNIDVVAEYITNSIPVPV-RDFTGQPKMIVIRSFDVNKpgqeveelRGGVAGGSILQGVLRRGQEIEIRP 306
                 555557899******************************994589*******************************99999999****9999888.9****************9999999776544.477888889999999886411222222356777888888888888887765 PP

  == domain 3    score: 4.4 bits;  conditional E-value: 0.007
   TIGR00475 276 klkelqklhifhgaketvgkvslledklallvldeplilakgdklvl 322
                 kl ++++l +  g   t g++  ++ +la++ l +p+  a+g+k+ l
  MMETSP1137-20121227|5733_1 405 KLAKGEILMLNIGSTSTGGRIQAVKADLAKIALTAPVCTAEGEKIAL 451
                 577888899999999*****************************987 PP

>> TIGR00485  EF-Tu: translation elongation factor Tu
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.5   2.0   9.6e-25   3.6e-22      10     265 ..      51     326 ..      44     393 .. 0.75

  Alignments for each domain:
  == domain 1    score: 76.5 bits;  conditional E-value: 9.6e-25
   TIGR00485  10 kphvnvgtighvdhgkttltaaittv........la.....kegkaaakkydeidka.p...eekargitintahveyete...krhyahvdcpghadyvknmitgaaqmdgailvvsaad.gpmpqtrehillarqvgvpklvvflnkvdlvddeellelvelevrellseydfpgddvpivrgsalkalegdaeweekilelmeavdeyiptperevdkpfllaiedvfsitgrgtvvtgrvergevkvgeeveiv.glk.etkkttvtgvemfkkl 265
                 ++ +n+gtighv hgk+t+  ai+ v        l      k g a+ak y+  d + p   +   rg + + + v+ +      rh + vdcpgh   +  m+ gaa md a+l++++ +  p pqt eh+     + + +++ + nk+dlv++   l+  e ++r +++  +   d  piv  sa    + d   e     +   v ++  +p+  v ++f +        + rg v+ g + +g+++ g+e+ei  g+  +     v  v +f ++
  MMETSP1137-20121227|5733_1  51 QATINIGTIGHVAHGKSTVVKAISGVqtvrfknxLErnitiKLGYANAKIYQCKDPScPrpgNFLTRGSSTEDSVVQGKWTydlVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNEpCPQPQTSEHLAAVEIMKLQHIIXLQNKIDLVKEAAALQQFE-DIRAFVK--GTVADSAPIVPISAQLRYNIDVVAEYITNSIPVPVRDFTGQPKMIVIRSFDVNKPGQEVEELRGGVAGGSILQGVLRRGQEIEIRpGIIsRGASGSVKCVPLFSRI 326
                 5679******************986622222222221111134557788888777542311133579999999988754321126******************************9999874799*****************************998888765.6888875..556789*****999877766655555555566678888888888888888877766666778*********************96354424455566666666655 PP

>> TIGR00483  EF-1_alpha: translation elongation factor EF-1, subunit alpha
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.6   1.8   1.2e-16   4.3e-14       5     277 ..      51     323 ..      48     379 .. 0.75

  Alignments for each domain:
  == domain 1    score: 49.6 bits;  conditional E-value: 1.2e-16
   TIGR00483   5 kehlnvafighvdsgkstlvgrllyeagaiderlleklkke.aeekgkasfefayvld....klkeerergvti.d.vahkkfetdk.yevtivdapghrdfiknmitgasqadaavlvvavddgelevqpqtrehvllartlgikqlivainkmdsvnydeekfeelkkevsellkkvgykpdevefipvsaykgdnvvkksenapwykgktllealdkleapekpvdkplri..piqdvysitgvgtvpvgrvetgvlkkgekvvfepa....gvsgevksiemh 277
                 +  +n+  ighv +gkst+v  +    g    r  + l+++ + + g a+ +     d    +  +   rg +  d v + k+  d   +v+ vd+pgh  ++  m+ ga+  daa+l++a+++     qpqt eh+     + ++ +i   nk+d v+      ++  + + +++k  g  +d+ +++p+sa    n+   +e   +      +   d   +p+  v + + +  p q+v ++   g v  g +  gvl++g+++ + p     g sg vk + + 
  MMETSP1137-20121227|5733_1  51 QATINIGTIGHVAHGKSTVVKAIS---GVQTVRFKNXLERNiTIKLGYANAKIYQCKDpscpRPGNFLTRGSSTeDsVVQGKWTYDLvRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNEP--CPQPQTSEHLAAVEIMKLQHIIXLQNKIDLVKEAA-ALQQF-EDIRAFVK--GTVADSAPIVPISAQLRYNIDVVAE---YITNSIPVPVRDFTGQPKMIVIRSFDVnkPGQEVEELR--GGVAGGSILQGVLRRGQEIEIRPGiisrGASGSVKCVPLF 323
                 5689**************997763...44444444445554156778888887777762222334455677654134777788777514799******************************998..89*****************************9543.44444.45667877..7789999******977777655444...33344557777888899988876654433899999997..57999**************999953444778889987665 PP

>> TIGR00231  small_GTP: small GTP-binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.1   1.6e-05    0.0058       2      27 ..      52      77 ..      51     103 .. 0.86
   2 !   17.4   0.0   1.7e-06   0.00062      34     162 ..     118     247 ..     110     249 .. 0.77

  Alignments for each domain:
  == domain 1    score: 14.3 bits;  conditional E-value: 1.6e-05
   TIGR00231  2 keikivivGhvdvGKstLlnsllknk 27
                ++i+i+ +Ghv++GKst  + +++ +
  MMETSP1137-20121227|5733_1 52 ATINIGTIGHVAHGKSTVVKAISGVQ 77
                589******************99987 PP

  == domain 2    score: 17.4 bits;  conditional E-value: 1.7e-06
   TIGR00231  34 kpgvtrdyvteqieedGktykvnllDTaGqedfdairrlyvreverslevvdivilvldveeglekqtkeiihea..kkkgvp.iilvvnKiDlkd......dlktkvkslfaklnaep.iielsaetgknidklfklv 162
                 ++ +++++v+ + ++d ++  v ++D +G++         +++    + v+d ++l+++ +e+  +q ++ +h a  + ++   ii   nKiDl++      +++   ++++   +  + i+++sa+ + nid +++++
  MMETSP1137-20121227|5733_1 118 GSSTEDSVVQGKWTYDLVR-HVSFVDCPGHDIL-------MATMLNGAAVMDAALLLIAGNEPC-PQPQTSEHLAavEIMKLQhIIXLQNKIDLVKeaaalqQFEDIRAFVKGTVADSApIVPISAQLRYNIDVVAEYI 247
                 5678888999999999988.9************.......****************99988875.555555555411555554267778*********8887555555555555554444*************998887 PP

>> TIGR02034  CysN: sulfate adenylyltransferase, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.0       2.7   9.9e+02       5      17 ..      58      70 ..      55      73 .. 0.86
   2 !   30.7   0.1   9.9e-11   3.7e-08      83     185 ..     139     240 ..     132     347 .. 0.83

  Alignments for each domain:
  == domain 1    score: -3.7 bits;  conditional E-value: 2.7
   TIGR02034  5 tcGsvddGkstli 17
                t G v  Gkst++
  MMETSP1137-20121227|5733_1 58 TIGHVAHGKSTVV 70
                899********97 PP

  == domain 2    score: 30.7 bits;  conditional E-value: 9.9e-11
   TIGR02034  83 ivadtPGheqytrnmatgastadlavllvdarkGv.leqtrrhsiiasllGikhvvlavnkidlvdydeevfeeikkdylalaeklgvsdvtviPlsalkGdnv 185
                    d+PGh+     m  ga+ +d a+ll+   +   + qt  h   + ++ ++h++   nkidlv+  ++  ++  +d +a+ +     +  ++P+sa    n+
  MMETSP1137-20121227|5733_1 139 SFVDCPGHDILMATMLNGAAVMDAALLLIAGNEPCpQPQTSEHLAAVEIMKLQHIIXLQNKIDLVKEAAAL-QQ-FEDIRAFVKGTVADSAPIVPISAQLRYNI 240
                 467**************************998876367***************************865532.22.34556777887888889999999877776 PP

>> TIGR01393  lepA: GTP-binding protein LepA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.1     0.012       4.5       5      23 ..      55      73 ..      51      92 .. 0.76
   2 !   20.9   0.0   5.7e-08   2.1e-05      71     222 ..     137     302 ..     117     325 .. 0.75

  Alignments for each domain:
  == domain 1    score: 3.3 bits;  conditional E-value: 0.012
   TIGR01393  5 nfsiiahidhGkstladrl 23
                n+  i h+ hGkst++  +
  MMETSP1137-20121227|5733_1 55 NIGTIGHVAHGKSTVVKAI 73
                8999**********98654 PP

  == domain 2    score: 20.9 bits;  conditional E-value: 5.7e-08
   TIGR01393  71 vlnlidtPGhvdfsyevsrslaaceGalllvdaaqGveaqtlanvylale.kdl.eiiPvinkidlPs.advervkkeieevi.G..ldaeeailvsaktGigieelleaivkkvpaPkgdkeaplkalifdsv........ydayrGvvvyvrvveGkikkgdki 222
                 ++ ++d PGh  +   +    a  + alll+           ++   a+e ++l +ii + nkidl + a   +  ++i+ ++ G   d++ ++ +sa+   +i+ + e i + +p P  d + + k +++ s+         ++ rG v+   +++G +++g++i
  MMETSP1137-20121227|5733_1 137 HVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNEPCPQPQTSEHLAAVEiMKLqHIIXLQNKIDLVKeAAALQQFEDIRAFVkGtvADSAPIVPISAQLRYNIDVVAEYITNSIPVPVRDFTGQPKMIVIRSFdvnkpgqeVEELRGGVAGGSILQGVLRRGQEI 302
                 4689******9999999999999********9998875555566666776345526999******964244444455666655332257788999****************************9999999877522222222345566666666666666666665 PP

>> TIGR00491  aIF-2: translation initiation factor aIF-2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.0     0.012       4.6       9      30 ..      58      79 ..      51     101 .. 0.81
   2 !   20.6   0.0   7.1e-08   2.6e-05      72     135 ..     139     204 ..     132     227 .. 0.88
   3 ?   -4.3   0.0       2.5   9.2e+02     486     513 ..     380     407 ..     377     413 .. 0.78

  Alignments for each domain:
  == domain 1    score: 3.3 bits;  conditional E-value: 0.012
   TIGR00491  9 vlGhvdhGkttlldkirktrva 30
                 +Ghv hGk+t++  i + + +
  MMETSP1137-20121227|5733_1 58 TIGHVAHGKSTVVKAISGVQTV 79
                68***********999987765 PP

  == domain 2    score: 20.6 bits;  conditional E-value: 7.1e-08
   TIGR00491  72 lvidtPGheaftslrkrGGaladiailvvdineGf.kpqtveavnilrqlktPfvva.ankidrip 135
                  ++d PGh+++ +    G a+ d a+l++  ne   +pqt e +  +  +k   ++   nkid+++
  MMETSP1137-20121227|5733_1 139 SFVDCPGHDILMATMLNGAAVMDAALLLIAGNEPCpQPQTSEHLAAVEIMKLQHIIXlQNKIDLVK 204
                 599******************************7659*****99999999998877538****997 PP

  == domain 3    score: -4.3 bits;  conditional E-value: 2.5
   TIGR00491 486 evlaGvlrvgaplikedGekvGevreik 513
                 ev    lr+  ++   dGek G+v+++ 
  MMETSP1137-20121227|5733_1 380 EVSYYLLRRLLGVKTADGEKAGKVQKLA 407
                 5555678888888899999999999875 PP

>> TIGR00487  IF-2: translation initiation factor IF-2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.0     0.013       4.8      90     110 ..      56      76 ..       7      97 .. 0.69
   2 !   20.1   0.4   1.3e-07   4.7e-05     136     245 ..     137     247 ..     128     305 .. 0.74

  Alignments for each domain:
  == domain 1    score: 3.6 bits;  conditional E-value: 0.013
   TIGR00487  90 vtimGhvDhGktsLLdsirkt 110
                 +  +Ghv hGk +++  i  +
  MMETSP1137-20121227|5733_1  56 IGTIGHVAHGKSTVVKAISGV 76 
                 4558*********99988654 PP

  == domain 2    score: 20.1 bits;  conditional E-value: 1.3e-07
   TIGR00487 136 kitflDtPGheaftsmrarGakvtDivvlvvaadDGv.kpqtieaiehakaanv.PiivainkiDkpeanpDrvkqelsey.glvpeewGGetifvpvsalkgkgideLldai 245
                 +++f+D PGh+ + +    Ga v D ++l +a ++   +pqt e +      +   ii   nkiD  +       q+ ++   +v       + +vp+sa+   +id + + i
  MMETSP1137-20121227|5733_1 137 HVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNEPCpQPQTSEHLAAVEIMKLqHIIXLQNKIDLVKEAA--ALQQFEDIrAFVKGTVADSAPIVPISAQLRYNIDVVAEYI 247
                 69**********9999999*************99876489****99888877762577778****754332..2233333213455555666677888888777777766665 PP

>> TIGR03594  GTPase_EngA: ribosome-associated GTPase EngA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.7   0.1    0.0035       1.3     149     198 ..      32      76 ..       7      83 .. 0.67
   2 !   13.5   0.0   1.5e-05    0.0057     273     344 ..     177     249 ..     151     255 .. 0.77

  Alignments for each domain:
  == domain 1    score: 5.7 bits;  conditional E-value: 0.0035
   TIGR03594 149 ikdLldeileelpeeeeeeeeeeeeepikiaiiGrpNvGKStLvNallge 198
                 +++L  + l++l+ e  +     ++++i+i+ iG    GKSt v a+ g 
  MMETSP1137-20121227|5733_1  32 LEKLDVNTLNALSPEVIS-----RQATINIGTIGHVAHGKSTVVKAISGV 76 
                 333333333333333222.....2456*****************999876 PP

  == domain 2    score: 13.5 bits;  conditional E-value: 1.5e-05
   TIGR03594 273 eqDlkiaglileegkalvivvNKwDlvkdekeleelkkele.eklkflkfapivfiSAltgkgveklleaike 344
                 +  +++a + + + + ++ + NK+Dlvk+++ l+++++     k + ++ apiv iSA+ + +++ + e i++
  MMETSP1137-20121227|5733_1 177 QTSEHLAAVEIMKLQHIIXLQNKIDLVKEAAALQQFEDIRAfVKGTVADSAPIVPISAQLRYNIDVVAEYITN 249
                 45567888888888899999*******8888888887654435666779****************99998865 PP

>> TIGR01394  TypA_BipA: GTP-binding protein TypA/BipA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.8   0.1    0.0037       1.4       3      21 ..      55      73 ..      53      90 .. 0.83
   2 !    6.6   0.1    0.0011       0.4      65     131 ..     137     205 ..     126     307 .. 0.88

  Alignments for each domain:
  == domain 1    score: 4.8 bits;  conditional E-value: 0.0037
   TIGR01394  3 niaiiahvDhGkttlvDkl 21
                ni  i hv hGk t+v ++
  MMETSP1137-20121227|5733_1 55 NIGTIGHVAHGKSTVVKAI 73
                9999***********9876 PP

  == domain 2    score: 6.6 bits;  conditional E-value: 0.0011
   TIGR01394  65 kinivDtPGhaDfGGevervlsmvdgvlllvDase.Gplpqtrfvlkkalelglkpivvi.nkiDrpda 131
                 ++  vD PGh      +     ++d++lll+  +e  p pqt   l     ++l+ i+ + nkiD  ++
  MMETSP1137-20121227|5733_1 137 HVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNEpCPQPQTSEHLAAVEIMKLQHIIXLqNKIDLVKE 205
                 6889*************9***********99988846999**99888777778877665449**96544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (485 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       182  (0.0443686); expected 82.0 (0.02)
Passed bias filter:                      129  (0.0314481); expected 82.0 (0.02)
Passed Vit filter:                        24  (0.0058508); expected 4.1 (0.001)
Passed Fwd filter:                        11  (0.00268162); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.55u 0.17s 00:00:00.72 Elapsed: 00:00:00.72
# Mc/sec: 889.09
//
Query:       MMETSP1137-20121227|5734_1  [L=138]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.2e-44  148.2   0.3    2.7e-44  147.9   0.2    1.1  1  TIGR00059 L17: ribosomal protein L17


Domain annotation for each model (and alignments):
>> TIGR00059  L17: ribosomal protein L17
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  147.9   0.2   6.5e-48   2.7e-44       1     111 [.      28     138 .]      28     138 .] 0.99

  Alignments for each domain:
  == domain 1    score: 147.9 bits;  conditional E-value: 6.5e-48
   TIGR00059   1 svrklgrtsahRkallrnlasallkhekiettkakakelrrvveklitlakvdnlaarrevkaylrnkellkkLfseiapryeereGGYtRilklgkRrgDaaemailelv 111
                 ++rkl+r +++Rkallr l++++++++ki+tt+a+akelr++v+++itlak+++l+arr++  y+++k+l+++Lf++ + ry +r+GGYtR+lk g+RrgD+aem i+elv
  MMETSP1137-20121227|5734_1  28 GFRKLNRPADQRKALLRGLTTEVIRNGKITTTLARAKELRKRVDHMITLAKDGSLHARRQALGYMYDKQLVHALFENAPERYSDRNGGYTRVLKDGFRRGDNAEMGIIELV 138
                 579***********************************************************************************************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (138 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       110  (0.0268162); expected 82.0 (0.02)
Passed bias filter:                      102  (0.0248659); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.16u 0.13s 00:00:00.29 Elapsed: 00:00:00.28
# Mc/sec: 628.09
//
Query:       MMETSP1137-20121227|5735_1  [L=718]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (718 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       106  (0.0258411); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.15s 00:00:00.59 Elapsed: 00:00:00.61
# Mc/sec: 1553.58
//
Query:       MMETSP1137-20121227|5736_1  [L=570]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.2e-06   22.9  11.2      0.011   11.6   1.0    4.1  4  TIGR00870 trp: transient-receptor-potential calcium channel protein


Domain annotation for each model (and alignments):
>> TIGR00870  trp: transient-receptor-potential calcium channel protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.4   0.0    0.0004       1.6     178     207 ..      72     101 ..      60     108 .. 0.91
   2 !    7.6   0.2   4.4e-05      0.18     120     163 ..     128     171 ..     109     173 .. 0.88
   3 !   11.6   1.0   2.7e-06     0.011     133     202 ..     183     246 ..     180     248 .. 0.85
   4 !    7.8   0.3   3.9e-05      0.16     124     163 ..     215     254 ..     209     260 .. 0.86

  Alignments for each domain:
  == domain 1    score: 4.4 bits;  conditional E-value: 0.0004
   TIGR00870 178 gespLnlaaclasesivsllsedpAdilta 207
                 g+ pL+laa +++ + +  l++++A++++ 
  MMETSP1137-20121227|5736_1  72 GRRPLSLAASIGAHQCLVHLLRHGANVNAS 101
                 8999***********99999****999986 PP

  == domain 2    score: 7.6 bits;  conditional E-value: 4.4e-05
   TIGR00870 120 andestseftkgitalilAihkqnyeivklLlekgasvearakg 163
                 a+++++ +   g + li+A      ++v+lLl+kga ++  a+g
  MMETSP1137-20121227|5736_1 128 AKASASASTHDGASCLIMASGAAHEKCVRLLLAKGAALHHVATG 171
                 667777888899**************************988877 PP

  == domain 3    score: 11.6 bits;  conditional E-value: 2.7e-06
   TIGR00870 133 talilAihkqnyeivklLlekgasvearakgdefvksqekdslyhgespLnlaaclasesivsllsedpA 202
                 tal+ A    ++++v lLl++ga+v+  a  +e + s+e+ ++      + +a  ++ e++v+ll+  +A
  MMETSP1137-20121227|5736_1 183 TALMCACAAGDVNTVALLLDSGADVNQVASSSEATDSPEQHCA------MTIACEMGHEEVVRLLIARGA 246
                 9**********************************99996654......566666777777777777776 PP

  == domain 4    score: 7.8 bits;  conditional E-value: 3.9e-05
   TIGR00870 124 stseftkgitalilAihkqnyeivklLlekgasvearakg 163
                 + ++  + + a+ +A +    e+v+lL+++ga + a  ++
  MMETSP1137-20121227|5736_1 215 EATDSPEQHCAMTIACEMGHEEVVRLLIARGAAIDAIGCC 254
                 5566667899*************************88888 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (570 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        71  (0.0173086); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.13s 00:00:00.53 Elapsed: 00:00:00.56
# Mc/sec: 1343.46
//
Query:       MMETSP1137-20121227|5737_1  [L=373]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-16   58.6   0.0    6.2e-16   56.5   0.0    1.8  1  TIGR02798 ligK_PcmE: 4-carboxy-4-hydroxy-2-oxoadipate aldolase/oxaloacetate decarboxylase
    1.4e-05   22.8   0.1    2.2e-05   22.1   0.0    1.3  1  TIGR01935 NOT-MenG: RraA family


Domain annotation for each model (and alignments):
>> TIGR02798  ligK_PcmE: 4-carboxy-4-hydroxy-2-oxoadipate aldolase/oxaloacetate decarboxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.5   0.0     3e-19   6.2e-16      40     195 ..      69     235 ..      37     258 .. 0.78

  Alignments for each domain:
  == domain 1    score: 56.5 bits;  conditional E-value: 3e-19
   TIGR02798  40 lrpiytgakvagsavtvllqp...........gdnwmlhvaaeqlkegdvvvaavtaesedgyfgdllatslqargargliidagvrdvrdlkemdfpvwskaisa.kgtvkatlgsvnipvvvanalvnpgdvvvadddgvvvvpaakaeavleaaqareaneedkr 195
                  rp+ +g k ag avt+   p           g +   + a e   + +v+v+++  + e    gd+    lq  g  gl+ d+ vrd  ++    fpv+s + +  +g         n  + + ++ v pgd ++ d+dgvvvvpa++a++v + a+ re+ e   +
  MMETSP1137-20121227|5737_1  69 ARPLAKGMKCAGRAVTLNFVPqrpdiaadkpaGVDSPEYEAFELCGPKNVLVMSSVGPWE-SVGGDIKFLRLQQLGLGGLVTDGSVRDTDEILGYGFPVFSYSTTPkQGPAAMQPWECNGVIECGKVAVRPGDAIIGDQDGVVVVPASHAQQVYDIAHGREEIEVIIK 235
                 478888888888888876655221221111112223334566777788888888887765.577999999*******************************988751677777778999999***************************************9997544 PP

>> TIGR01935  NOT-MenG: RraA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.1   0.0   1.1e-08   2.2e-05      79     149 ..     140     211 ..     111     212 .. 0.85

  Alignments for each domain:
  == domain 1    score: 22.1 bits;  conditional E-value: 1.1e-08
   TIGR01935  79 eengWeGvivnGavrdvaelaeldlGvkalaasPlksek.kgaGevdvpvtlagvtikpgeyvyaDedGilv 149
                 ++ g  G++  G+vrd++e+ +    v + +++P +     +  e +  ++ + v ++pg+ + +D+dG++v
  MMETSP1137-20121227|5737_1 140 QQLGLGGLVTDGSVRDTDEILGYGFPVFSYSTTPKQGPAaMQPWECNGVIECGKVAVRPGDAIIGDQDGVVV 211
                 556788****************************9976515678**************************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (373 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        56  (0.0136519); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.26u 0.16s 00:00:00.42 Elapsed: 00:00:00.46
# Mc/sec: 1070.26
//
Query:       MMETSP1137-20121227|5739_1  [L=207]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (207 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       215  (0.0524135); expected 82.0 (0.02)
Passed bias filter:                       97  (0.023647); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.17s 00:00:00.39 Elapsed: 00:00:00.45
# Mc/sec: 607.15
//
Query:       MMETSP1137-20121227|5740_1  [L=138]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.4e-16   58.1   0.6    2.7e-16   57.9   0.4    1.0  1  TIGR00714 hscB: Fe-S protein assembly co-chaperone HscB


Domain annotation for each model (and alignments):
>> TIGR00714  hscB: Fe-S protein assembly co-chaperone HscB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.9   0.4   6.6e-20   2.7e-16      18     151 ..       3     134 ..       1     137 [. 0.93

  Alignments for each domain:
  == domain 1    score: 57.9 bits;  conditional E-value: 6.6e-20
   TIGR00714  18 qyHPD..vsksaqeqaaalqqStelNqAykTLkdplkRaeyllkLqrnidLasEqksvrdvafllellklrdeleeieqakdeaaleklkkkvkkeiqsllaalvealkeqdyaaAakytskLkylrkLaseleel 151
                 ++HPD    ksa +qa a  + + + +Ay  +  p +Ra+ ll+L+ +  L++++    d++    l+++++  e ie a+  a++ kl++ + +++ +  aal  a++e ++++A ++t +L+yl+k++se++e 
  MMETSP1137-20121227|5740_1   3 EFHPDrlGHKSASDQADAASHTAAVTHAYTVISRPHLRAKHLLELR-GRPLDEDE--GGDLLGAEFLMEVMESREAIESAT-SAQMSKLREVNARRMAEVSAALRAAFDEAQLDDARRLTAQLQYLHKIESEINER 134
                 69***99899***********************************9.****9998..678888888888899999999887.5899**********************************************9875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (138 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       160  (0.0390054); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.17u 0.13s 00:00:00.30 Elapsed: 00:00:00.39
# Mc/sec: 467.04
//
Query:       MMETSP1137-20121227|5741_1  [L=714]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (714 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       132  (0.0321794); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.15s 00:00:00.61 Elapsed: 00:00:00.61
# Mc/sec: 1544.92
//
Query:       MMETSP1137-20121227|5742_1  [L=375]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.4e-85  284.3   0.5    2.9e-85  284.1   0.4    1.1  1  TIGR00128 fabD: malonyl CoA-acyl carrier protein transacylase
    1.1e-56  190.3   4.3    1.7e-56  189.7   3.0    1.2  1  TIGR03131 malonate_mdcH: malonate decarboxylase, epsilon subunit
    3.3e-29   98.2   4.5      1e-28   96.5   3.2    1.6  1  TIGR02813 omega_3_PfaA: polyketide-type polyunsaturated fatty acid synthase PfaA


Domain annotation for each model (and alignments):
>> TIGR00128  fabD: malonyl CoA-acyl carrier protein transacylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  284.1   0.4   2.1e-88   2.9e-85       2     289 ..      71     367 ..      70     368 .. 0.96

  Alignments for each domain:
  == domain 1    score: 284.1 bits;  conditional E-value: 2.1e-88
   TIGR00128   2 kialvFPGqGsqavGmgkdlleeypiakelfdqAdeiLgydlkklvqegdaeelnktaytqPalyvvsvilyellkekg......glkPdfvaGHsLGEysAlvaagaldFedalklvkkRgelmqeavpegegamaavlgldeeqlakvleeake...evvslanfnspeqvvisGtkkevekaeallk.eagakralpLevsgafHselmkpaaeklkelleaiqfnkatvpvisnvdaeaetekdklkekLveqltspvrwtesveklaekGvtefaEvGpGkvLtGLikrikkd 289
                 k+ ++FPGqG+q+vGmg + +e++p+a el+++A+eiLgydl +++  g++eel+ t  +qPa++v s++++e+l+ +g        + d + G sLGEy Al  aga++Fed+++++k Rge mq a+ + e++m+ v+gld+e++a+++e a+e   e++++anf +p+    sG+ ++v+++ + +k e +a++a+ L+v+gafH+++m+pa  kl+e+l+ ++++k+ +pvisnvda+++ + + +k  L++q+t pv+w+  v++l ++G+++ +E+GpGkvL G++kr+ k+
  MMETSP1137-20121227|5742_1  71 KTVFMFPGQGAQTVGMGVEAAETVPAAAELYAKASEILGYDLLAKCS-GPKEELDSTVISQPAIFVSSLAAVEKLRASGdegvaaIEAADAACGLSLGEYTALAFAGAISFEDGVRITKARGEAMQAASEAAESGMVSVIGLDKEKVAALCEAASEasgEQIQIANFLCPGNYACSGAMAAVDAVCEKAKpEFKARMAVKLAVAGAFHTSFMAPAVPKLEEVLADVTISKPRIPVISNVDAKPHSDPEVIKSILTKQVTAPVQWETIVTNLLADGMEVGYELGPGKVLAGIMKRVDKT 367
                 6789*******************************************.***************************998865333223578999***********************************************************99998889******************************9*******************************************************************************************************9875 PP

>> TIGR03131  malonate_mdcH: malonate decarboxylase, epsilon subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  189.7   3.0   1.2e-59   1.7e-56       2     283 ..      73     372 ..      72     374 .. 0.92

  Alignments for each domain:
  == domain 1    score: 189.7 bits;  conditional E-value: 1.2e-59
   TIGR03131   2 lllfpGQGsqragm.laelpdepkaaavleeasevlgadvlel..ddaealastrsaQllilaagvaaaraLkaelek.......psavAGySvGelaAavvagalefedaLkLvalRaelMeqavpe.eygllavlGleeeevealvakag......vyiAiinaedqvViaGsraalsavaeaar.aaGasrakrlaVsvpSHtkllakaaeelaealaeiplaapklpvlsaiearkvrdaaallddLaqqiakpvdWhavveaiaergarlvielgPGsaLtklanelfpelpais 283
                 +++fpGQG+q+ gm +++ ++ p+aa++ ++ase+lg d+l+     +e+l st++ Q++i++ ++aa+++L+a + +       ++a+ G+S+Ge+ A + aga++fed++++ ++R+e+M++a++  e+g+++v+Gl++e+v+al+++a       + iA++  + ++  +G+ aa++av e+a+ +  a+ a +laV+ + Ht+++a a+ +l+e+la +++++p++pv+s+++a++  d++ +   L +q+  pv+W  +v ++   g+++  elgPG++L+ +++++ +++++i 
  MMETSP1137-20121227|5742_1  73 VFMFPGQGAQTVGMgVEAAETVPAAAELYAKASEILGYDLLAKcsGPKEELDSTVISQPAIFVSSLAAVEKLRASGDEgvaaieaADAACGLSLGEYTALAFAGAISFEDGVRITKARGEAMQAASEAaESGMVSVIGLDKEKVAALCEAASeasgeqIQIANFLCPGNYACSGAMAAVDAVCEKAKpEFKARMAVKLAVAGAFHTSFMAPAVPKLEEVLADVTISKPRIPVISNVDAKPHSDPEVIKSILTKQVTAPVQWETIVTNLLADGMEVGYELGPGKVLAGIMKRVDKTAKMIN 372
                 79************55668899*****************9977667899************************98764310000155678***********************************8877*********************9999********************************8457899************************************************************************************************99988877765 PP

>> TIGR02813  omega_3_PfaA: polyketide-type polyunsaturated fatty acid synthase PfaA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.5   3.2   7.4e-32     1e-28     580     879 ..      71     364 ..      61     375 .] 0.85

  Alignments for each domain:
  == domain 1    score: 96.5 bits;  conditional E-value: 7.4e-32
   TIGR02813 580 kvaalfaGqGsqylnmGrelacnfpelrqaladadkvfsqagktalssvlypipvfndesrkaqeealtntayaqsaiGvlsvgqyklltqaG...f....kadlvaGhsfGelsalcaaGvisdddylklaferGqamaassaeadaGvmyavilkvkksaevik.ncikdiegvsianynsptqlviaGasaaiqlaakalkekGfk...aiplpvsgafhtplvahaqkpfsaaidkakfnkpkvplysngtgklhkndakaikkalkdhilesvhfseeleaiyaaGarvfvefGpknilqklveni 879
                 k + +f GqG+q + mG e a   p   +  a+a ++++ + +++ s    p            +e l  t  +q+ai v s++  + l  +G        +ad   G s+Ge +al  aG is +d ++++ +rG+am a+s+ a++G+   + l+++k a   + +  ++ e+++ian+ +p +   +Ga aa++   ++ k   fk   a+ l v+gafht ++a a   + + + + + +kp++p+ sn  +k h+ d + ik  l + +   v++++ + ++ a+G  v  e+Gp  +l  +++++
  MMETSP1137-20121227|5742_1  71 KTVFMFPGQGAQTVGMGVEAAETVPAAAELYAKASEILGYDLLAKCSG---P------------KEELDSTVISQPAIFVSSLAAVEKLRASGdegVaaieAADAACGLSLGEYTALAFAGAISFEDGVRITKARGEAMQAASEAAESGMVSVIGLDKEKVAALCEaASEASGEQIQIANFLCPGNYACSGAMAAVDAVCEKAK-PEFKarmAVKLAVAGAFHTSFMAPAVPKLEEVLADVTISKPRIPVISNVDAKPHS-DPEVIKSILTKQVTAPVQWETIVTNLLADGMEVGYELGPGKVLAGIMKRV 364
                 78899*********************9999999999988766555443...3............456788888999999999888887766552222222268**********************************************99999999999887655055667899*****************999886666554.345522379*********************************************7.7899**************************************98776655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (375 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       148  (0.03608); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.41u 0.17s 00:00:00.57 Elapsed: 00:00:00.51
# Mc/sec: 970.51
//
Query:       MMETSP1137-20121227|5743_1  [L=432]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.014   13.1   0.0        4.7    5.1   0.0    2.8  3  TIGR01376 POMP_repeat: chlamydial polymorphic outer membrane protein repeat


Domain annotation for each model (and alignments):
>> TIGR01376  POMP_repeat: chlamydial polymorphic outer membrane protein repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0      0.63   2.6e+03      18      26 ..     355     363 ..     355     364 .. 0.82
   2 ?    5.1   0.0    0.0011       4.7       2      13 ..     379     390 ..     378     392 .. 0.88
   3 ?    5.1   0.0    0.0011       4.7       2      13 ..     398     409 ..     397     411 .. 0.88

  Alignments for each domain:
  == domain 1    score: -3.5 bits;  conditional E-value: 0.63
   TIGR01376  18 AIyatgkis 26 
                 AI+a +++ 
  MMETSP1137-20121227|5743_1 355 AIAAHEACK 363
                 9***98886 PP

  == domain 2    score: 5.1 bits;  conditional E-value: 0.0011
   TIGR01376   2 ngtilFsnNsak 13 
                  g+i+F++N a+
  MMETSP1137-20121227|5743_1 379 DGPIFFEGNVAA 390
                 69********97 PP

  == domain 3    score: 5.1 bits;  conditional E-value: 0.0011
   TIGR01376   2 ngtilFsnNsak 13 
                  g+i+F++N a+
  MMETSP1137-20121227|5743_1 398 DGPIFFEGNVAA 409
                 69********97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (432 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        48  (0.0117016); expected 82.0 (0.02)
Passed bias filter:                       44  (0.0107265); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.29u 0.18s 00:00:00.47 Elapsed: 00:00:00.38
# Mc/sec: 1500.51
//
Query:       MMETSP1137-20121227|5744_1  [L=163]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (163 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        42  (0.0102389); expected 82.0 (0.02)
Passed bias filter:                       42  (0.0102389); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.15s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 768.37
//
Query:       MMETSP1137-20121227|5745_1  [L=592]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00011   17.9  32.9    0.00015   17.5  22.8    1.1  1  TIGR02168 SMC_prok_B: chromosome segregation protein SMC
     0.0011   14.6  29.5     0.0015   14.1  20.4    1.1  1  TIGR02169 SMC_prok_A: chromosome segregation protein SMC
  ------ inclusion threshold ------
        5.5    3.0  12.5        7.4    2.5   8.6    1.2  1  TIGR00934 2a38euk: potassium uptake protein, Trk family


Domain annotation for each model (and alignments):
>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5  22.8   1.1e-07   0.00015     750     947 ..     219     403 ..     161     424 .. 0.46

  Alignments for each domain:
  == domain 1    score: 17.5 bits;  conditional E-value: 1.1e-07
   TIGR02168 750 rlaqlekeleeleeereeleeeleeaeeelkeaeeeieeleaeieqlkeelka.lrealseleaeltelkeeaaek.eerleslekeiaalekeleeleeqieeleeeiesleaeieeleeeleeleeeleellkekasleealaelreeleelseelrelekkvkelereleelreklaqlelrleeleveiaelqerl 947
                 +l++ e +  e+++e e+++++ ee++ee+ + e+eie+l++e +q+++e++   + +l+ l+++ + ++++++++  +++e  ++ +a+++  +e+l+ +i+++e ei +++++ ++ ++ lee e+el++l  +kas+e++l+e+  e e++++e  e   ++ + + ++e++++ +++++              +++
  MMETSP1137-20121227|5745_1 219 DLSEVEGRTVEATQELEAKKKQAEETKEETRRLEAEIEALKEERRQQNAEHERkMKHELTLLKQKERLERRRVEDEyLNAIETAREGKARATAAAEDLKGEIKSKESEINAMKQSGADEKQ-LEEKETELKKLRTAKASVENQLHEALFEHETTKKETAERTWHNGQVTSRVEARNDVVEEIQ--------------KQF 403
                 3333333334444444444444444444444444444444444444433333202223333333333222222222023333333344444444444444444444444444444444333.3444444444444444444444444444444444444444444444444444444444444..............333 PP

>> TIGR02169  SMC_prok_A: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1  20.4   1.1e-06    0.0015     368     840 ..     228     379 ..     183     427 .. 0.38

  Alignments for each domain:
  == domain 1    score: 14.1 bits;  conditional E-value: 1.1e-06
   TIGR02169 368 eelraeleevdkeaaelreelkelkekleklkeelnelkreldr.......lleelkrleeel..aelkaelerieekiaeleeeleelaeeikkaeqkleqlkedlekaekelrklkeeleklekelselerelaeleaqakaseeesreskaveevlkasieGvlGtvaqLgkveerYalAiEvAaGnrlnnvVVeddavAkeaIellkerkagratFLPLnkmrskerdlsilaedGvidfavdlvefdekyepvvkyvlgdTlvvedleaarrlmgkfRlVtLeGellekSGaitGGsraersgelvsasekeklerlrerleeLereleslqselrriekrldelssklsdaekkieeiekeleqleeeeeklkerleeleeklseleeeleekkeelkeleaeieeleeklaklkealedleaelseekieeieeelekleeevsriearleeieaelnklelekelleeeiqelq 840
                  e  +ele+++k+a+e++ee+  l+ ++e+lkee+ + + e++r       ll +++rle ++   e  +++e ++e +a   +++e+l+ eik +e +++ +k+  +  ek+l+++++el+kl     ++e++l+e+  +++++++e                                                                                                                                                                                                                                                                                                                                          +e  
  MMETSP1137-20121227|5745_1 228 VEATQELEAKKKQAEETKEETRRLEAEIEALKEERRQQNAEHERkmkheltLLKQKERLERRRveDEYLNAIETAREGKARATAAAEDLKGEIKSKESEINAMKQSGA-DEKQLEEKETELKKLRTAKASVENQLHEALFEHETTKKET-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AERT 379
                 222222222222222222222222222222222222222222220000000111111111111001122333333333333333333333333333333333322221.2222333333333333333333333333322222222222.........................................................................................................................................................................................................................................................................................................................................2222 PP

>> TIGR00934  2a38euk: potassium uptake protein, Trk family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   8.6    0.0054       7.4     171     301 ..     231     382 ..     151     459 .. 0.47

  Alignments for each domain:
  == domain 1    score: 2.5 bits;  conditional E-value: 0.0054
   TIGR00934 171 rtqvslprksakrddfqeklfsGelvkrdeqdsvhsdqnsedvk.............sdtsadesisslrfdeskekkkstrvpsekfakrresrdidpedlyrsimmlqekheata......kirdk.......iseanslaaesdeessesrriq 301
                   +    +k+a++ + + + ++ e++  +e+ + +  ++++ +k                ++de+++   +++++e k ++ +++e+ + +++s++ +++ +++s +  ++ +e ++                  ++ea   + ++++e++e +  +
  MMETSP1137-20121227|5745_1 231 TQELEAKKKQAEETKEETRRLEAEIEALKEERRQQNAEHERKMKheltllkqkerleRRRVEDEYLN--AIETAREGKARATAAAEDLKGEIKSKESEINAMKQSGADEKQLEEKETelkklrT---AkasvenqLHEALFEHETTKKETAERTWHN 382
                 1112222222222233333333333333333222222222222233333333333333333333333..3444444444444444444444444444444444444333322222221222220...122211122222111111111111111111 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (592 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       412  (0.100439); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                         8  (0.00195027); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.59u 0.18s 00:00:00.77 Elapsed: 00:00:00.73
# Mc/sec: 1070.38
//
Query:       MMETSP1137-20121227|5746_1  [L=286]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (286 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       129  (0.0314481); expected 82.0 (0.02)
Passed bias filter:                      103  (0.0251097); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.17s 00:00:00.42 Elapsed: 00:00:00.48
# Mc/sec: 786.44
//
Query:       MMETSP1137-20121227|5747_1  [L=174]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (174 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        74  (0.01804); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.16s 00:00:00.36 Elapsed: 00:00:00.28
# Mc/sec: 820.22
//
Query:       MMETSP1137-20121227|5748_1  [L=283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (283 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        61  (0.0148708); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.13s 00:00:00.35 Elapsed: 00:00:00.38
# Mc/sec: 982.97
//
Query:       MMETSP1137-20121227|5749_1  [L=528]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.5e-13   47.4  16.2    3.7e-13   46.8  11.2    1.1  1  TIGR02121 Na_Pro_sym: sodium/proline symporter
    3.3e-12   44.0  19.7    4.5e-12   43.5  13.6    1.2  1  TIGR00813 sss: transporter, solute:sodium symporter (SSS) family
    6.6e-11   39.7  10.4    1.1e-10   39.0   7.2    1.3  1  TIGR02119 panF: sodium/pantothenate symporter
      8e-11   38.9  15.8    1.3e-06   25.0   5.2    2.3  2  TIGR03648 Na_symport_lg: probable sodium:solute symporter, VC_2705 subfamily


Domain annotation for each model (and alignments):
>> TIGR02121  Na_Pro_sym: sodium/proline symporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.8  11.2   3.6e-16   3.7e-13     128     441 ..       8     328 ..       2     351 .. 0.79

  Alignments for each domain:
  == domain 1    score: 46.8 bits;  conditional E-value: 3.6e-16
   TIGR02121 128 iilvfftlytssGlvaGgklfesafGldyklalligali..vviytflGGflavswtdlvqgllmlvalvlvPivallklggls.eileaveaidpekldllkgasviaiisl.laWGlGyfGqPhiivrfmaiksakelkkarligisWmilsllGavlvglvGiayvekvpgvevadk..ekifillskvlfnPliaGl.llaailaaimstissqllvsssalaedlykallkkeasekelvlvgrlsvlvvaiiaivlalnpdssvlelvsyaWaGfGaafgpvvllslywk.rlt......ragalagmvigavtvivwkeak 441
                 i+lv  ++y ++  ++    f+  fGl+ +  +  +a++  +++  ++GG   v++td  qg+lm++a+vl+     +  gg++ +i++  +  +p+ +++ +  + +a+ s  l W + +   Ph   r  a  + k++k a ++      l++l  v+ g +G+  ++ +   e++++    +  l+    f  ++aGl +l   +aai+st +s l+ ++  ++ ++    +k +as+  +  v+++  + v+ + +++al+ d  + +l +    G+     p +l+ l+++ r+t        galag++++ v+   w+e +
  MMETSP1137-20121227|5749_1   8 ILLVPSIIYLAAQPITLKGNFNDLFGLEDNNVIAPVAICafILVLEWIGGLNVVAYTDSAQGILMILAFVLMSSTLCHLYGGWGsDIFNPKTYPKPNFFQVPSTEDQVAMWSFsLQW-ISFAALPHFQQRTYASGEFKSMKLAYFVISLAPWLTMLVGVFSGTLGVYLLQGQ---ETSNPftGVVAELMGASGFG-YVAGLlILVGSVAAIISTADSLLIATTHMVMSEVVNPNMK-NASHARVSFVSKVVSFTVMALGLLIALTDDGALSDLAAV-QNGMCLQAVPTLLIGLFFSpRFTphawviAVGALAGFITTVVINYTWNENE 328
                 34455678999998888889*******98877655554412566789***************************9999999997257888888999******999999999852666.8999*********************998877778999999*******9888876...44444415555556666665.66775168899**********9999999999999887665.678888999*******************99999998765.68999999999****998744442211115678888888777777777643 PP

>> TIGR00813  sss: transporter, solute:sodium symporter (SSS) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.5  13.6   4.4e-15   4.5e-12      85     408 ..       2     308 ..       1     317 [. 0.78

  Alignments for each domain:
  == domain 1    score: 43.5 bits;  conditional E-value: 4.4e-15
   TIGR00813  85 rilsvlililviflkisvdlfsgalllelvlGl..dlylsllllalitilYtviGGlkAvvwtDtlqavimivgvlilpvvafsevgglesvvekakqaaptvvsvddllkleldpltsdlpwgalvfGliivallywcldqvivqRllaaksaksakkgvlisgvlkllpmllavlpGliaralytdvdpalagavqqasdqaypllvvellp....pglaglflav.llaAvlStlssilnsastvfteDlYkkiirkaaekekkivsrgrvavlvaiviaivvaaaqsgqvlqlvqsafgilgapllavfvLglfwkrvnakGAlvgl 408
                 r+ +++il++ ++++++++ +     +++++Gl  +   + +++ ++++++  iGGl++v++tD+ q+++mi+++++++    +  gg +s +   k+  + ++ +  +++ ++   +  l w   ++ l++             qR++a+ + ks+k +  +  +   l ml+ v+ G +++ l +           q++   +   v el++      +agl++ v  +aA++St++s+l+++  +++  + ++ +++a+   +++  +++v+ + ++++++++a+   g + +l +  +g+   ++ ++++  +f++r++  + ++++
  MMETSP1137-20121227|5749_1   2 RYSIFVILLVPSIIYLAAQPITLKGNFNDLFGLedNNVIAPVAICAFILVLEWIGGLNVVAYTDSAQGILMILAFVLMSSTLCHLYGGWGSDIFNPKTYPKPNFFQVPSTEDQVAMWSFSLQW-ISFAALPHF-----------QQRTYASGEFKSMKLAYFVISLAPWLTMLVGVFSGTLGVYLLQG----------QETSNPFTGVVAELMGasgfGYVAGLLILVgSVAAIISTADSLLIATTHMVMSEVVNPNMKNASH--ARVSFVSKVVSFTVMALGLLIALTDDGALSDLAAVQNGMCLQAVPTLLIGLFFSPRFTPHAWVIAV 308
                 5667788888889999999777778899999993335566678888999999************************************77766666665442323444444444444445555.444555555...........8*****************************************86..........233344555666777765556677776665268************************99988877..999999*********************************999876666555567899876544443 PP

>> TIGR02119  panF: sodium/pantothenate symporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.0   7.2     1e-13   1.1e-10     164     415 ..      45     295 ..       4     345 .. 0.77

  Alignments for each domain:
  == domain 1    score: 39.0 bits;  conditional E-value: 1e-13
   TIGR02119 164 fslsvliyvliGGfravvltdalqgivmllgtiilliavikaggGv.ekiveklkeidpnlvtpfgadgsldkafvasfwilvgiGvvglpqiavralsykdskalhraliigtivvgilmlgmhlvGvlgravlpdlkvsd...kvipllalkvlppilaGif.laaplaaimstvdsllllssstlikdlylnylekeakekkvkkisllitlllgllvllaalkppdliiwlnlfalGGleaaflwplvlGlyw 415
                  ++ +l+   iGG+  v+ td+ qgi+m+l+ +++  ++ +  gG   +i +  +  +pn+ +  ++++++++   +  wi       +lp+   r+ +  + k+++ a  + ++   + ml   + G lg  +l + + s+    v+  l+     +++aG++ l + +aai+st dsll+ ++ +++ ++ +n   k+a++ +v+ +s ++++ + +l ll+al     +  l  +   G+    + +l++Gl++
  MMETSP1137-20121227|5749_1  45 ICAFILVLEWIGGLNVVAYTDSAQGILMILAFVLMSSTLCHLYGGWgSDIFNPKTYPKPNFFQVPSTEDQVAMWSFSLQWI----SFAALPHFQQRTYASGEFKSMKLAYFVISLAPWLTMLVGVFSGTLGVYLLQGQETSNpftGVVAELMGASGFGYVAGLLiLVGSVAAIISTADSLLIATTHMVMSEV-VNPNMKNASHARVSFVSKVVSFTVMALGLLIALTDDGALSDLAAVQN-GMCLQAVPTLLIGLFF 295
                 4556788889*********************999998888888887256778888899**998777777666554455565....6679*******************9988888877888888899*********9999873335889999999*******8527899***********999888777776.899999****************9999999999887666555544433.3334444555556555 PP

>> TIGR03648  Na_symport_lg: probable sodium:solute symporter, VC_2705 subfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.8   1.1e-07   0.00012     116     192 ..       7      85 ..       2      94 .. 0.78
   2 !   25.0   5.2   1.2e-09   1.3e-06     361     482 ..     200     322 ..     187     348 .. 0.77

  Alignments for each domain:
  == domain 1    score: 18.5 bits;  conditional E-value: 1.1e-07
   TIGR03648 116 iaailisftYvvgqirgvGvvfsrflevdielgv..liglavvlvyavlgGmkgvtytqvaqyvvlivaylvpvvflsl 192
                 +++++ s++Y+++q   +   f  +++++ +  +  +   a +lv   +gG+  v+yt  aq +++i+a+++    l +
  MMETSP1137-20121227|5749_1   7 VILLVPSIIYLAAQPITLKGNFNDLFGLEDNNVIapVAICAFILVLEWIGGLNVVAYTDSAQGILMILAFVLMSSTLCH 85 
                 5667789*******888877788877775444331145556789999************************98877765 PP

  == domain 2    score: 25.0 bits;  conditional E-value: 1.2e-09
   TIGR03648 361 vvialvaAGglaAAlstaaGLllvissaisHDllkkllnpkasekkrllvarvallvviviaaylalnkpgfiaqvvalAFglaaaslFpalvlGifwk.rankegai..agmlaGllvtllyiv 482
                 v   l+  G++aA +sta+ Ll++ +  +  ++++  + ++as+++  +v++v+ ++v+++  ++al++ g ++++ a+  g+  +++ p+l++G+f + r + ++ +  +g laG+++t++  +
  MMETSP1137-20121227|5749_1 200 VAGLLILVGSVAAIISTADSLLIATTHMVMSEVVNPNM-KNASHARVSFVSKVVSFTVMALGLLIALTDDGALSDLAAVQNGMCLQAV-PTLLIGLFFSpRFTPHAWViaVGALAGFITTVVINY 322
                 33346889***************887666666665554.456777777899********************************98875.9*****976437776664422578888888776433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (528 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       208  (0.050707); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.42u 0.15s 00:00:00.56 Elapsed: 00:00:00.48
# Mc/sec: 1451.88
//
Query:       MMETSP1137-20121227|5750_1  [L=231]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (231 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        48  (0.0117016); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.17s 00:00:00.37 Elapsed: 00:00:00.28
# Mc/sec: 1051.36
//
Query:       MMETSP1137-20121227|5751_1  [L=250]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (250 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        94  (0.0229157); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.15s 00:00:00.35 Elapsed: 00:00:00.35
# Mc/sec: 942.78
//
Query:       MMETSP1137-20121227|5752_1  [L=487]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0022   15.1  42.3     0.0036   14.4  29.3    1.3  1  TIGR02794 tolA_full: protein TolA


Domain annotation for each model (and alignments):
>> TIGR02794  tolA_full: protein TolA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4  29.3   8.7e-07    0.0036      44     231 ..      55     239 ..      39     290 .. 0.56

  Alignments for each domain:
  == domain 1    score: 14.4 bits;  conditional E-value: 8.7e-07
   TIGR02794  44 paavaqqanrlqqqekkaakkepkpeepkqerqkkleqqaeeakkkqaaeqarqkelekqraaaekaakkaeeaakekeekkkqaeeakakqaaEakakaeaeaKaekkakeeAakkaEeeakakaa.aeakkkaEae.eakkkaeaeak.KakaeaeaKakae.eakaKaeaeAkaKAeaeAkaKaeaeak 231
                 p   aq++n++q+   +a +++    + k++r+     +a + ++++  e+ r ++le +r++ +++a+  +  +++ ee+++   +a ++ +a a++ ae e++ ++++++++  +aE  a+   a aea +++  + +a++k ++ ++  a +e +  a +e + +a ae   k KAeaeA++ a  + +
  MMETSP1137-20121227|5752_1  55 PRPPAQRINSQQRIDHDATDQT---DDRKRARICSPMPRAFQ-NTNRRREEDRARQLEVERLRIAEEARIRDFMREADEERQRTL-QATERMRAAAQRVAESEQQTARRKAAALMEEAERHAQRVRAdAEAHAARA-AqDAARKLAETTQlIASEERKLAALQEqTLAAQAEL-SKTKAEAEAARSAVSTSA 239
                 4555677777777777777777...44444444444444444.667777777777777777777777775666665444444433.44444444444444444433344434433333333321111122222222.125566665555444444444444444544555553.699999998887765444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (487 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       476  (0.116041); expected 82.0 (0.02)
Passed bias filter:                      125  (0.0304729); expected 82.0 (0.02)
Passed Vit filter:                        22  (0.00536324); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.20s 00:00:00.69 Elapsed: 00:00:00.50
# Mc/sec: 1285.57
//
Query:       MMETSP1137-20121227|5753_1  [L=344]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (344 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        45  (0.0109703); expected 82.0 (0.02)
Passed bias filter:                       41  (0.00999512); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.16s 00:00:00.41 Elapsed: 00:00:00.34
# Mc/sec: 1335.42
//
Query:       MMETSP1137-20121227|5754_1  [L=309]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.9e-31  107.1   0.0    2.7e-31  106.6   0.0    1.2  1  TIGR00040 yfcE: phosphodiesterase, MJ0936 family
    9.6e-05   20.0   0.0    0.00014   19.5   0.0    1.2  1  TIGR00024 SbcD_rel_arch: putative phosphoesterase


Domain annotation for each model (and alignments):
>> TIGR00040  yfcE: phosphodiesterase, MJ0936 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  106.6   0.0   1.3e-34   2.7e-31       2     140 ..      48     194 ..      47     217 .. 0.93

  Alignments for each domain:
  == domain 1    score: 106.6 bits;  conditional E-value: 1.3e-34
   TIGR00040   2 kilvlsDtHiperatelpvellkkls..evdlvvhaGdltsakvlkefedlaekviavrGnnDg......ekeelpeeeiieaealkiglvhgdevvpkgdleslealakeldvDvlifGHtHepvaeelegilllNPGsltgprng 140
                 ++lvl+D Hip r +elp+++++ l   +++ ++ +G l+++ +l+ +++la  v +vrG++D+       ++ +pe  +++++++k+gl+hg++vvp gd+esl al+++ld+Dvl +GHtH+  ++e eg+l++NPG  tg+++ 
  MMETSP1137-20121227|5754_1  48 LVLVLGDLHIPHRVSELPKKFKALLVpgKIQHILCTGNLVDKSTLDYLKTLASDVHVVRGDFDEstflpgVADSFPETKVVTIGQFKLGLCHGHQVVPWGDPESLGALQRQLDCDVLFTGHTHRLSTYESEGKLFINPGTATGAFSA 194
                 799*********************954478888999*********************************99************************************************************************9976 PP

>> TIGR00024  SbcD_rel_arch: putative phosphoesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.0   6.8e-08   0.00014      52     143 ..      63     170 ..      43     184 .. 0.73

  Alignments for each domain:
  == domain 1    score: 19.5 bits;  conditional E-value: 6.8e-08
   TIGR00024  52 sivdkygieklivaGDlkhefkk..leikevrefievvredlilirGnhD..aliaa..aglevkeslrigky..livhGhkvp...d.......redldekvlilGheh 143
                  +  k   ++l+v G ++h+     l  k   +++ ++  d+ ++rG+ D  ++++     +  ++ + ig++  ++ hGh+v+   d       + +ld +vl  Gh h
  MMETSP1137-20121227|5754_1  63 ELPKK--FKALLVPGKIQHILCTgnLVDKSTLDYLKTLASDVHVVRGDFDesTFLPGvaDSFPETKVVTIGQFklGLCHGHQVVpwgDpeslgalQRQLDCDVLFTGHTH 170
                 55444..789**********988767778888*****************955688875556677899****9944579***95412221122222345566666666666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (309 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       109  (0.0265724); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.26u 0.17s 00:00:00.43 Elapsed: 00:00:00.55
# Mc/sec: 741.54
//
Query:       MMETSP1137-20121227|5755_1  [L=615]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.7e-38  128.0   0.0    1.1e-37  127.4   0.0    1.1  1  TIGR01804 BADH: betaine aldehyde dehydrogenase
    4.5e-37  125.8   0.0    7.3e-37  125.1   0.0    1.3  1  TIGR01780 SSADH: succinate-semialdehyde dehydrogenase
    7.1e-35  118.3   0.0    9.8e-35  117.9   0.0    1.1  1  TIGR03216 OH_muco_semi_DH: 2-hydroxymuconic semialdehyde dehydrogenase
    3.5e-33  112.7   0.0    7.4e-33  111.7   0.0    1.3  1  TIGR02299 HpaE: 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase
    4.5e-29   99.4   0.0    6.6e-29   98.9   0.0    1.1  1  TIGR01237 D1pyr5carbox2: putative delta-1-pyrroline-5-carboxylate dehydrogenase
    8.7e-25   85.1   0.0    1.8e-23   80.8   0.0    2.0  1  TIGR01722 MMSDH: methylmalonate-semialdehyde dehydrogenase (acylating)
      2e-24   83.8   0.0      3e-24   83.2   0.0    1.2  1  TIGR01238 D1pyr5carbox3: delta-1-pyrroline-5-carboxylate dehydrogenase
    2.7e-24   83.6   0.1      8e-24   82.0   0.0    1.6  1  TIGR03240 arg_catab_astD: succinylglutamic semialdehyde dehydrogenase
    8.3e-24   81.8   0.0    1.5e-22   77.7   0.0    2.1  1  TIGR03250 PhnAcAld_DH: putative phosphonoacetaldehyde dehydrogenase
    4.1e-22   76.4   0.0    1.4e-12   45.0   0.0    2.3  2  TIGR03374 ABALDH: 1-pyrroline dehydrogenase
    4.5e-16   56.0   0.1    4.5e-15   52.7   0.0    2.3  1  TIGR02278 PaaN-DH: phenylacetic acid degradation protein paaN
    4.9e-16   56.2   0.0    1.1e-15   55.1   0.0    1.4  1  TIGR01236 D1pyr5carbox1: 1-pyrroline-5-carboxylate dehydrogenase


Domain annotation for each model (and alignments):
>> TIGR01804  BADH: betaine aldehyde dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  127.4   0.0   3.3e-40   1.1e-37      16     453 ..     103     578 ..      96     589 .. 0.82

  Alignments for each domain:
  == domain 1    score: 127.4 bits;  conditional E-value: 3.3e-40
   TIGR01804  16 eiinPanqeviaevaeatredvekaiaaarraqgewaalsalergrilrriaellrkkneelakletldtGkaleetlvadiddiadvleffaGladkleGeiielgip.sfakvrreplGvvvgigawnyPlliaswksaPalaaGnalvlkPseitPltalkvaelleeaGlPkGvfnvvlGkgaevGeelvehkdvakvsltGgvetGkkimaaaaeelkk.........vtlelGGksPlivfddadlelavd.qall.........anffsaGqvcsnGtrvlvekkikekflaklvervkkiklGdgfdeetelGPlis.aehrdkvlkyiekgkeegaklaiGGk.........vpeeeelde..GffiePtvfadvtddmtivreeifGPvlsvlefes.....eeev...ikrandteyGlaagvftadleraervaerlkaGtvwindynlspaevPfGGykqsGiGr 453
                 ei n +++e+i +    +re++ +++      q++w al  +er   +r  +  + ++++++a+      Gk+l+++  ++++   + +++ +  ad+     +++g+  +   ++r+p G+v  +++wn+P+  a+  + Pal aGn ++lk   +  ++    a+++   G+ +  ++ ++ +  +     ++   +a+  +tG+v+ G+++ ++ +++  +          +lelGG +   v  d   e a    al+         + + ++Gq c +  r +++++  +++ a   e + k  +Gd+   et lGPl    +  + +l+ +e + + ga++++GG+         + e+  ++e  G f++Pt++ d +  m+  ree fGP+l v+  ++      +ev   ++   dt + l+a+v+t d   a+  + ++k+Gt+++n  n +  ++ + G+  sG G 
  MMETSP1137-20121227|5755_1 103 EIRNLYSGEIIERRPFVGREEAMATVGILSERQSKWGALPLEERVARIRDGVAYINEHRKQVANDIVATVGKPLSQA-ESEVAASVKKMQYLCESADEALAPRMSTGQRgEIYETHRVPKGIVDIVAPWNFPMFTALNGAIPALLAGNGVILKHQSVPRIG-DWFARAFGTEGVSRAPLEHLHIDVPTSSWLAASAAPIAHRVFTGSVRGGREVSQSISARAANlslatpfvaTSLELGGCDAAYVHADLGSEAAXPrXALNscarfivqlGRLSNTGQSCCAVKRAILHSAAYDAWCALATEEMSKFVAGDPARRETTLGPLYGgGAACEALLELVEDALALGARVVVGGEdvsalshsaRRERCVFQErsGHFFRPTLLLDAKPPMRCLREESFGPLLPVQRLDTpsvgqPDEVrfaVEAVGDTPFALTASVWTLDSLFADAFVREVKTGTCYVNWCNDVHPQLVWSGSGFSGNGA 578
                 555667788888888889999999999999999*******************************99999******99.99999999***********999999999888577789**************************************98775555.5689999999***99999999885555555556778***************98854443333111112211569**********999888888642455422111111255678***********************************************972578899*******************8333222221233444664449*****************************9987522222355433488889***********************************************9999874 PP

>> TIGR01780  SSADH: succinate-semialdehyde dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  125.1   0.0   2.1e-39   7.3e-37       4     412 ..     107     556 ..     104     585 .. 0.80

  Alignments for each domain:
  == domain 1    score: 125.1 bits;  conditional E-value: 2.1e-39
   TIGR01780   4 PatGekigkvpevsveeveeaieaaeealktykeltakerakllrkwyelilenkddlaklltlenGkplkeakgevlyaasyleWfaeeakrvyGdviaslqsdkrllvikqPvGvaaiitPWnfPaamitrkagaalaaGctvvvkPaeqtPlsalalarlaekaGvPkgvlnvvtssaeevGkvltssPlvrkvsftGstavGkillkqsast.........vkkvslelGGnaPlivfddadldqav.....egalas......kfrnagqtcvcanrlyvhesvydefakklaekvkklkvGdGldegvtvGplin.ekavekvekhiedavekGakvvvgG..........dkr.....eekggnffePtvlsdvtadmlvakeetfGPlapvfkfdd.....eee...vvalandtevGlaayffskdlakiirvaeelevGlvgv 412
                   +Ge+i++ p v+ ee+ +++    e  + + +l  +er   +r  +  i e+++++a+ + +  Gkpl++a++ev+ +   +++ +e a       +++ q  +   + + P G++ i++PWnfP       a +al aG  v++k + + P     +ar     Gv +  l+ +  +        +s   +    ftGs   G+ + +  +               slelGG     v  d   + a      ++  a       +  n+gq c    r ++h+  yd + +  +e+++k++ Gd    ++t Gpl     a+e + + +eda++ Ga+vvvgG            r     +e+ g+ff Pt+l d++  m++ +ee+fGPl pv ++d+      +e   +v+   dt++ l+a +++ d        +e+ +G   v
  MMETSP1137-20121227|5755_1 107 LYSGEIIERRPFVGREEAMATVGILSERQSKWGALPLEERVARIRDGVAYINEHRKQVANDIVATVGKPLSQAESEVAASVKKMQYLCESADEALAPRMSTGQRGEIYETHRVPKGIVDIVAPWNFPMFTALNGAIPALLAGNGVILKHQ-SVPRIGDWFARAFGTEGVSRAPLEHLHIDVPTSSWLAASAAPIAHRVFTGSVRGGREVSQSISARaanlslatpFVATSLELGGCDAAYVHADLGSEAAXprxalNSC-ARfivqlgRLSNTGQSCCAVKRAILHSAAYDAWCALATEEMSKFVAGDPARRETTLGPLYGgGAACEALLELVEDALALGARVVVGGedvsalshsaR-RercvfQERSGHFFRPTLLLDAKPPMRCLREESFGPLLPVQRLDTpsvgqPDEvrfAVEAVGDTPFALTASVWTLDSLFADAFVREVKTGTCYV 556
                 568****************************************************************************************************************************999999999**********9965.6899999999999999**********999766665555544455556****99998776544333000111111345789****988888888766655411110332.11122223678************************************************9725789*********************65555444321.12223357899******************************99862222224422258888999999999999988766656666666665544 PP

>> TIGR03216  OH_muco_semi_DH: 2-hydroxymuconic semialdehyde dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  117.9   0.0   2.9e-37   9.8e-35      49     460 ..     134     577 ..     105     595 .. 0.79

  Alignments for each domain:
  == domain 1    score: 117.9 bits;  conditional E-value: 2.9e-37
   TIGR03216  49 lkgewgklsvaeraellkkvadeierrfdeflaaevadtGkpkslaskldiprgaanfrvfadvvknvateafematpdGk.ealnyavrkplGvvgvispwnlplllltwkvapalacGntvvvkpseetpatatllaevmeevGvpkGvynvvhGfGpdsaGefltrhpdvdaitftGetrtGeaimkaa.........adgvkevslelGGknaaivfadadldaa.....vegvlrsa.....flntGqvclgtervyverpifdrfvaalkekaeklklGvpedeaaelGpliske.hrdkvlsyyklaveeGatvvtGGG.vpelgd.........elaeGayvqptiwtglpdsarvvkeeifGpvchvapfds.....eeev...iarandtayGlaasvwtedlsrahrvakklevGvvwvnswflrdlrtpfGGsklsGiG 460
                  +++wg l  +er++ ++     i++  ++  +  va  Gkp s+a+  +++ ++  ++ + +     a+ea+  +++ G+ + +  ++r p+G+v +++pwn+p++       pal  Gn v++k  +  p+    +a  + + Gv +   + +h   p s+    ++   +    ftG  r G  + +++         a+     slelGG +aa v ad   +aa     +++++r +     ++ntGq c + +r  ++   +d + a  +e++ k+  G p   +++lGpl       + +l   + a   Ga vv+GG  v +l++         ++++G++ +pt++ + +   r+++ee fGp+  v+ +d+      +ev   ++ + dt + l+asvwt d   a    +++++G ++vn       +  + Gs+ sG G
  MMETSP1137-20121227|5755_1 134 RQSKWGALPLEERVARIRDGVAYINEHRKQVANDIVATVGKPLSQAES-EVAASVKKMQYLCE----SADEALAPRMSTGQrGEIYETHRVPKGIVDIVAPWNFPMFTALNGAIPALLAGNGVILKH-QSVPRIGDWFARAFGTEGVSRAPLEHLHIDVPTSSWL-AASAAPIAHRVFTGSVRGGREVSQSIsaraanlslATPFVATSLELGGCDAAYVHADLGSEAAxprxaLNSCARFIvqlgrLSNTGQSCCAVKRAILHSAAYDAWCALATEEMSKFVAGDPARRETTLGPLYGGGaACEALLELVEDALALGARVVVGGEdVSALSHsarrercvfQERSGHFFRPTLLLDAKPPMRCLREESFGPLLPVQRLDTpsvgqPDEVrfaVEAVGDTPFALTASVWTLDSLFADAFVREVKTGTCYVNWCNDVHPQLVWSGSGFSGNG 577
                 4689***********99998889999999999999*********9975.66666666665554....3455555555555415677799******************99999*************97.579*************************999998754.44556688899*******98776543111111111233446799*************98887622111444444322222268************************************************98761568899***************99537777652222222224578******************************999973333346644449999*********************************954333344556666666655 PP

>> TIGR02299  HpaE: 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  111.7   0.0   2.2e-35   7.4e-33      51     457 ..     135     577 ..     119     586 .. 0.79

  Alignments for each domain:
  == domain 1    score: 111.7 bits;  conditional E-value: 2.2e-35
   TIGR02299  51 fkkwaelkaaerkklllkladliekhadeiavlesldtGqalrlvrkavaraaenfrffadkaeeakdgetlpvd.eflnytvrvpvGvvglitPwnaPfmlstwkiaPalaaGntvvlkpaelsPltaarlaelvkeaglPdGvlnlvhGfGeeaGkalvehpavkavsfvGetatGsaimr....ngad.tl....krlslelGGksPvivfddadle.....raldavv.fmi....fslnGerctassrllvqesiaedfveklkervkairvGdPldeetevGPlike.ehlakvlsylevaekeGatilvGgkkake........vldkelsrGnyvaPtvlvdadnkmriaqeeifGPvltvipfk.......deee.alelandieyGlagyvwtedvgralrvaaaleaGmiyvnsenvrdlrtPfGGvkasGig 457
                  +kw+ l+  er   ++     i++h +++a      +G++l++ + +va + + +++  + a+ea   +    +   ++ t rvp G+v +++Pwn P+ ++     Pal aGn v+lk     P     +a+     g+    l+ +h    ++         +    f+G+   G+ + +    ++a+ +l       slelGG + + v +d   e      al++   f +     s+ G+ c a  r +++ + ++ +    +e + +   GdP   et++GPl    +  + +l+ +e a   Ga+++vGg+++++            + ++G++  Pt+l+da+  mr  +ee fGP+l v  ++       de   a+e   d+ + l++ vwt d   a     ++++G +yvn  n  + +  + G+  sG g
  MMETSP1137-20121227|5755_1 135 QSKWGALPLEERVARIRDGVAYINEHRKQVANDIVATVGKPLSQAESEVAASVKKMQYLCESADEALAPRMSTGQrGEIYETHRVPKGIVDIVAPWNFPMFTALNGAIPALLAGNGVILKHQS-VPRIGDWFARAFGTEGVSRAPLEHLHIDVPTSSWLAASAAPIAHRVFTGSVRGGREVSQsisaRAANlSLatpfVATSLELGGCDAAYVHADLGSEaaxprXALNSCArFIVqlgrLSNTGQSCCAVKRAILHSAAYDAWCALATEEMSKFVAGDPARRETTLGPLYGGgAACEALLELVEDALALGARVVVGGEDVSAlshsarreRCVFQERSGHFFRPTLLLDAKPPMRCLREESFGPLLPVQRLDtpsvgqpDEVRfAVEAVGDTPFALTASVWTLDSLFADAFVREVKTGTCYVNWCNDVHPQLVWSGSGFSGNG 577
                 469*********9999999999********************************************998876665589999***************************************876.5777788888888888877777776654443333333333344445666666666554411103332122111146799***********99665522221467764414333344799***********************************************975267888999*****************99875544322112235689***************************99865542222222665448999**************************************99999999999888876 PP

>> TIGR01237  D1pyr5carbox2: putative delta-1-pyrroline-5-carboxylate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.9   0.0   1.9e-31   6.6e-29      48     467 ..     101     557 ..      87     592 .. 0.84

  Alignments for each domain:
  == domain 1    score: 98.9 bits;  conditional E-value: 1.9e-31
   TIGR01237  48 idsinpadksevvGkvakasvedaeqalqaakkafeewkktdveeraaillkaaailkrrrhelsallvlevGkiyaeadaevaeaidfleyyaremiklakskevlsieGeknrylyiplGvavvispwnfplailvGmtvapivtGncvvlkpaeaatviaaklveileeaGlpkGvlqfvpGkGsevGeylv.dhpktrlitftGs....revGlriyedaakvqpGqkhlkrviaelGGkdavivdesadieqa.....vaa....avt.safGfaGqkcsaasrvvvlekvydevverfveatkslkvgktdeadvqvgpvidqk.sfdkikeyielgkaeg.klvlg...............gedddskGyfikptifkdvdrkarlaqeeifGpvvavlrak.....dfde...aleiansteygltGgvisnsrerierakaefevGnlyfn 467
                 i+ i    + e++ +   +  e+a  ++ +  +   +w   ++eer+a ++   a +++ r++++  +v  vGk++++a+ eva ++  ++y  +++ +    + ++   Ge  +   +p+G+  +++pwnfp+  +   ++ ++++Gn v+lk   + + i   ++  +   G+ +  l+++        ++l  + + +    ftGs    rev   i ++aa +     ++     elGG da  v  +   e a     +++    +v+ + +  +Gq c a+ r+++++  yd+      e     + g +   ++ +gp+   + + + + e +e + a g ++v+g                  +++ G+f +pt++ d  +  r  +ee fGp++ v r       + de   a+e   +t ++lt +v +      +    e + G  y+n
  MMETSP1137-20121227|5755_1 101 INEIRNLYSGEIIERRPFVGREEAMATVGILSERQSKWGALPLEERVARIRDGVAYINEHRKQVANDIVATVGKPLSQAESEVAASVKKMQYLCESADEALAPRMSTGQRGEIYETHRVPKGIVDIVAPWNFPMFTALNGAIPALLAGNGVILKHQ-SVPRIGDWFARAFGTEGVSRAPLEHLHIDVPT-SSWLAaSAAPIAHRVFTGSvrggREVSQSISARAANLSLATPFVAT-SLELGGCDAAYVHADLGSEAAxprxaLNScarfIVQlGRLSNTGQSCCAVKRAILHSAAYDAWCALATEEMSKFVAGDPARRETTLGPLYGGGaACEALLELVEDALALGaRVVVGgedvsalshsarrerCVFQERSGHFFRPTLLLDAKPPMRCLREESFGPLLPVQRLDtpsvgQPDEvrfAVEAVGDTPFALTASVWTLDSLFADAFVREVKTGTCYVN 557
                 66666667778888889999999999999999999**************************************************************9988899999***********************************************86.57889*******************99765544.455541455677778887666669****************999976.57*******9997554444431111043311113322567789**********************************************98751678899****9988653788888888888888877766668899***************************9998864222222333333899999999****99999999888888999999999988 PP

>> TIGR01722  MMSDH: methylmalonate-semialdehyde dehydrogenase (acylating)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.8   0.0   5.2e-26   1.8e-23      18     438 ..     102     562 ..      96     581 .. 0.80

  Alignments for each domain:
  == domain 1    score: 80.8 bits;  conditional E-value: 5.2e-26
   TIGR01722  18 ipvsnpatnevlakvaeasaeevdaavasaretfaawaetsvaerarvllryqallkehrdeiaklisaeqGktledakGdvarGlevvehacsvtslllGetvesvakdvdvysirqplGvvaGitpfnfpamiplwmfplaiacGntfvlkpsekvpsaavklaellseaGapdGvlnvvhGdkeavdrlleh.pdvkavsfvGsvavgeyiyetgsahgkrvq.......a..laGaknhmvvlpdadkeaald..alvgaa........vGaaGqrcmaisaavlvGaa.kelveeireraekvrvgagddpgaelGplitk.qakervasliasgakeGaevlldGrgykveGy...........eeGnfvGitllervkpdmkiykeeifGpvlvvleadt........leeaiklinespyGnGtaiftsdGaaarkfqheievGqvGvnvpipv 438
                  ++ n  ++e++ + ++   ee  a+v    e  + w+  ++ er   +    a ++ehr+++a+ i+a  Gk l++a+ +va  ++ +++ c+ +   l   ++   +     + r p G+v  ++p+nfp    l     a+  Gn  +lk  + vp      a+ +   G+    l+ +h d  +   l      +    f Gsv+ g+ + +  sa++  +        +    G  + + v  d   eaa    al + a        +  +Gq c a+  a+l  aa + +     e + k   g      + lGpl    +a e + +l++++ + Ga+v++ G  +    +             G+f  +tll + kp m++ +ee fGp+l v + dt        +  a++ + ++p+   ++++t d   a  f  e++ G   vn    v
  MMETSP1137-20121227|5755_1 102 NEIRNLYSGEIIERRPFVGREEAMATVGILSERQSKWGALPLEERVARIRDGVAYINEHRKQVANDIVATVGKPLSQAESEVAASVKKMQYLCESADEALAPRMSTGQRGEIYETHRVPKGIVDIVAPWNFPMFTALNGAIPALLAGNGVILKH-QSVPRIGDWFARAFGTEGVSRAPLEHLHIDVPTSSWLAASaAPIAHRVFTGSVRGGREVSQSISARAANLSlatpfvaTslELGGCDAAYVHADLGSEAAXPrxALNSCArfivqlgrLSNTGQSCCAVKRAILHSAAyDAWCALATEEMSKFVAGDPARRETTLGPLYGGgAACEALLELVEDALALGARVVVGGEDVSALSHsarrercvfqeRSGHFFRPTLLLDAKPPMRCLREESFGPLLPVQRLDTpsvgqpdeVRFAVEAVGDTPFALTASVWTLDSLFADAFVREVKTGTCYVNWCNDV 562
                 57899999**************************************9999999****************************************9998888887766555444557899*******************99888***********6.68****************************99999997651457777899999988888887777655433111111111223555555566665544443211222221111111125689**************99999***************999*********975278899*****************99877654432222111222157******************************99987433322223348999*******************************999976555 PP

>> TIGR01238  D1pyr5carbox3: delta-1-pyrroline-5-carboxylate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.2   0.0   8.7e-27     3e-24      71     486 ..     119     580 ..      70     587 .. 0.80

  Alignments for each domain:
  == domain 1    score: 83.2 bits;  conditional E-value: 8.7e-27
   TIGR01238  71 adaaevqeavdsavaafaewsatdakeraailerladlleshmpelvallvreaGktlsnaiaevreavdflryyakqvedvldeesaka............lGavvcispwnfplaiftGqiaaalaaGntviakpaeqtsliaaravellqeaGvpagviqllpGrGedvGaaltsderiaGviftGstevarlinkalakredap...vplia...etGGqnamivdstalaeqvv.advlasa.........fdsaGqrcsalrvlcvqedvadrvltlikGamdelkvgkpirlttdvGpvida.eakqnllahiekmkakakkvaqvkledd............vesekgtfvaptlf.eld.dldelkkevfGpvlhvvryka......deldkvvdkinakGygltlGvhsrieetvrqiekrakvGnvyvnrnlvGavvGvqpfGGeGlsGtGpka 486
                    +e+ ++v+   +  ++w a++ +er a ++     +++h  ++   +v   Gk ls+a +ev  +v  ++y ++ +++ l                   +G v  ++pwnfp+   +     al aGn vi k     + i       +   Gv  + ++ l     +     +s + ia  +ftGs    r + ++++ r ++    +p++a   e GG +a  v +   +e    +  l+s          +  +Gq c a++  ++     d    l    m++ + g p r +t +Gp+     a + ll+ +e   a + +v     + +             + + g f +ptl+ + +  +  l++e fGp+l v r  +      de+   v+ + ++ ++lt  v +          +++k G +yvn      v     + G G+sG G  a
  MMETSP1137-20121227|5755_1 119 VGREEAMATVGILSERQSKWGALPLEERVARIRDGVAYINEHRKQVANDIVATVGKPLSQAESEVAASVKKMQYLCESADEALAPRMSTGqrgeiyethrvpKGIVDIVAPWNFPMFTALNGAIPALLAGNGVILKHQ-SVPRIGDWFARAFGTEGVSRAPLEHLHIDVPTSSWLAASAAPIAHRVFTGSVRGGREVSQSISARAANLslaTPFVAtslELGGCDAAYVHADLGSEAAXpRXALNSCarfivqlgrLSNTGQSCCAVKRAILHSAAYDAWCALATEEMSKFVAGDPARRETTLGPLYGGgAACEALLELVEDALALGARVVVGGEDVSalshsarrercvFQERSGHFFRPTLLlDAKpPMRCLREESFGPLLPVQRLDTpsvgqpDEVRFAVEAVGDTPFALTASVWTLDSLFADAFVREVKTGTCYVNW--CNDVHPQLVWSGSGFSGNGAGA 580
                 556677778888888999****************9999*****************************************999987755447899******999************98888778889**********75.567788877778888899999999998887765555677889***********************99977889999866688******998765555432244454432222222226889**********************************************97615678899999877665554432222221222334455555567899******87222225999**************976223222667778*****************99999999999*********95..3445555568899999988766 PP

>> TIGR03240  arg_catab_astD: succinylglutamic semialdehyde dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.0   0.0   2.4e-26     8e-24      49     447 ..     136     575 ..     120     582 .. 0.74

  Alignments for each domain:
  == domain 1    score: 82.0 bits;  conditional E-value: 2.4e-26
   TIGR03240  49 pawarlsleeriavvkrfaelleeekeelaeviaketgkplweartevasmvakvaisikayeertGekeseladakavlrhr.phGvlavfGpynfpGhlpnGhivpallaGntvvfkpseltplvaeetvklwekaGlpaGvlnlvqGaretGkalaae.edidGllftGssntGallhrqlagrpeki.la.......lelGGnnplvveevkdidaa.........vhlivqsafis.aGqrctcarrllvkdgaeGdallerlvevaerltvgkydaepqpflGavise.kaakellaaqekllalggksll......elkql.........eeeaalltpgi.idvtevaevpdeeyfgpllkvlryk........dfdealaeanntrfGlaaGllsddrelydkflleiraGi..vnwnkpltGassaapfGGiGasG 447
                 ++w++l+leer+a ++   + ++e+++++a+ i    gkpl +a++eva+ v k++   ++ +e    + s+   ++    hr p+G++ +  p+nfp        +pallaGn v++k     p++++   +++ + G+    l+ +  ++ t   laa+   i   +ftGs + G  + + ++ r  ++ la       lelGG ++  v++    +aa         ++ ivq   +s +Gq c   +r ++++ a  da  +  +e  +++++g+  a  +  lG++     a ++ll+  e++lalg++ ++      +l++          e +  +++p++ +d         ee fgpll v r +        ++  a+++  +t f l+a + + d+   d f++e+++G   vnw +++     +  + G G sG
  MMETSP1137-20121227|5755_1 136 SKWGALPLEERVARIRDGVAYINEHRKQVANDIVATVGKPLSQAESEVAASVKKMQYLCESADEALAPRMSTGQRGEIYETHRvPKGIVDIVAPWNFPMFTALNGAIPALLAGNGVILKHQ-SVPRIGDWFARAFGTEGVSRAPLEHLHIDVPTSSWLAASaAPIAHRVFTGSVRGGREVSQSISARAANLsLAtpfvatsLELGGCDAAYVHADLGSEAAxprxalnscARFIVQLGRLSnTGQSCCAVKRAILHSAAY-DAWCALATEEMSKFVAGDP-ARRETTLGPLYGGgAACEALLELVEDALALGARVVVggedvsALSHSarrercvfqERSGHFFRPTLlLDAKPPMRCLREESFGPLLPVQRLDtpsvgqpdEVRFAVEAVGDTPFALTASVWTLDSLFADAFVREVKTGTcyVNWCNDVHP---QLVWSGSGFSG 575
                 68*****************************************************************99999999**99999979**************98866678************75.68********************************999862579*******************99865542222222233******9998876655555411111111145566655554489**99999988877665.6777766666677766653.4445556666654134456666666666666665552221114443311111111122334677775268888889999************963322222246679*******************************99655999887653...33334444444 PP

>> TIGR03250  PhnAcAld_DH: putative phosphonoacetaldehyde dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.7   0.0   4.5e-25   1.5e-22      19     428 ..     102     556 ..      87     575 .. 0.78

  Alignments for each domain:
  == domain 1    score: 77.7 bits;  conditional E-value: 4.5e-25
   TIGR03250  19 ievrepydgevvgtvpkasvedvrralevaaayrsk...ltryerskileraaellaarkeeisdlitlesGlskkdslyevgrvadvlklaaaevlrddgqifscdltphgkkrkvftlrepllgvisaitpfnhplnqvahkvapaiatnnrvvlkpsekvplsallladllyeaGlpeemlqvvtGd.preiadelitdehvdlvtftGgvaiGkliaa....kag.......ykravlelGGndplivled.........adldraadlavk.GsyknsGqrctavkrilvqesvadrftellvektralkyGdpldrsvdlGtvideaaa.klfeerveeavaeGarlllg..................nkrdGalyaptvldrvdpelalvreetfGpvspvirfkd.....idd...airisnstayglssgvctnrldaitkliaelevGtvnv 428
                  e+r+ y+ge++   p    e++ +++ +  + +sk   l   er + ++  ++ ++++++++++ i +  G    ++  ev   ++ +++  +      ++       + g++  ++ ++   +g++  ++p+n p+       +pa+ + n v+lk  + vp     +a  +   G+    l+ +  d p     +  +   +    ftG+v  G+ +++    +a+       +  + lelGG d   v  d           l+  a + v+ G   n+Gq c avkr +++ +  d++  l  e+  ++  Gdp+ r + lG +    aa + + e ve+a a Gar+++g                  ++r+G  + pt+l   +p ++ +ree+fGp+ pv r+++      d+   a++    t ++l+++v t +      +++e++ Gt  v
  MMETSP1137-20121227|5755_1 102 NEIRNLYSGEIIERRPFVGREEAMATVGILSERQSKwgaLPLEERVARIRDGVAYINEHRKQVANDIVATVGKPLSQAESEVAASVKKMQYLCE-----SADEALAPRMSTGQRGEIYETHRVPKGIVDIVAPWNFPMFTALNGAIPALLAGNGVILKH-QSVPRIGDWFARAFGTEGVSRAPLEHLHIDvPTSSWLAA-SAAPIAHRVFTGSVRGGREVSQsisaRAAnlslatpFVATSLELGGCDAAYVHADlgseaaxprXALNSCARFIVQlGRLSNTGQSCCAVKRAILHSAAYDAWCALATEEMSKFVAGDPARRETTLGPLYGGGAAcEALLELVEDALALGARVVVGgedvsalshsarrercvfQERSGHFFRPTLLLDAKPPMRCLREESFGPLLPVQRLDTpsvgqPDEvrfAVEAVGDTPFALTASVWTLDSLFADAFVREVKTGTCYV 556
                 37899999999999999999999999998888887633377889*9999999999999999999988888887776666677655544444333.....33333345667899999**9888889*********************************7.578999999999999999988777766544154433333.344455567999998776655400004432222222456789***********99888877776678888888775599**************************************************9876662667899***********9864444444433333333334689*******************************9875222212443335666788************99999**********9876 PP

>> TIGR03374  ABALDH: 1-pyrroline dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.9   0.0   3.1e-10   1.1e-07      25     173 ..     109     256 ..      96     269 .. 0.78
   2 !   45.0   0.0   4.1e-15   1.4e-12     263     452 ..     364     577 ..     302     588 .. 0.74

  Alignments for each domain:
  == domain 1    score: 28.9 bits;  conditional E-value: 3.1e-10
   TIGR03374  25 tgevileiaeasaeqvdaavraadaafaewgqttpkaraelllkladaieenaevfaklesrncgkplhavlndeipaivdvfrffagaar.clsglaageyleghtsmirrdpvgvvasiapwnyplmmaawklapalaagncvvlkps 173
                 +ge+i   +    e+  a+v    +  ++wg      r   +      i+e  ++ a+     +gkpl  + + e+ a v  +++++ +a  +l+         g      r p g+v  +apwn+p++ a     pal agn v+lk  
  MMETSP1137-20121227|5755_1 109 SGEIIERRPFVGREEAMATVGILSERQSKWGALPLEERVARIRDGVAYINEHRKQVANDIVATVGKPLSQA-ESEVAASVKKMQYLCESADeALAPR-MSTGQRGEIYETHRVPKGIVDIVAPWNFPMFTALNGAIPALLAGNGVILKHQ 256
                 566666666666667777777777788889988888888877777778999999999999999****9765.7899999999999987664145433.333345666667799**********************************975 PP

  == domain 2    score: 45.0 bits;  conditional E-value: 4.1e-15
   TIGR03374 263 vvegvrtfg.fynagqdctaacriyaqrgiydelveklgkavatlkigapedestelgplss.lahlervsaaveeakalshikvitggekv...............kgkgyyfaptllagakqddaivqkevfgpvvsitvfd........deeqvvrwandsryglassvwtkdvgrahrlsarlqygctwvnthfmlvsemphggqklsgyg 452
                  +  +  +g   n+gq c a  r     + yd+      + ++ +  g+p    t lgpl    a  e + ++ve+a al+  +v+ gge v               + +g++f+ptll +ak     +++e fgp++ +  +d        +    v+   d+ + l++svwt d   a  +   ++ g  +vn    +  ++   g   sg g
  MMETSP1137-20121227|5755_1 364 CARFIVQLGrLSNTGQSCCAVKRAILHSAAYDAWCALATEEMSKFVAGDPARRETTLGPLYGgGAACEALLELVEDALALGA-RVVVGGEDVsalshsarrercvfqERSGHFFRPTLLLDAKPPMRCLREESFGPLLPVQRLDtpsvgqpdEVRFAVEAVGDTPFALTASVWTLDSLFADAFVREVKTGTCYVNWCNDVHPQLVWSGSGFSGNG 577
                 4444555553579***********************************************8626889*************96.6777776431222222222222224689***************************998887332221102233466667899*************************9999987777777777777776666 PP

>> TIGR02278  PaaN-DH: phenylacetic acid degradation protein paaN
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.7   0.0   1.3e-17   4.5e-15      17     436 ..     102     549 ..      93     563 .. 0.75

  Alignments for each domain:
  == domain 1    score: 52.7 bits;  conditional E-value: 1.3e-17
   TIGR02278  17 vevadaitGevlarvsseGldlaaavayarevGgkalraltfheraaklkalakylserkeel.yalaattGatrrdnavdidGgigtlftyaskgrrelPdadlliedelealskdgsfqgrhiltpksGvavqinafnfPvwGlleklaPaflaGvPalvkPatatayvaealvklivesgl..lPeGalqlivGsvgdlldhldsrdvvaftGsa....ataeklrahpnvleksirfsaea...dslnaav....lGedvtpdepefdlfvkeivr.eltakaGqkctairrvlvPkalveavlealkarlakvklGdPreedvklGplvsveq.redveaavaallaagaevrlgdpeeld................GaffaPtlllaeepeadavhateafGPvatllayd....draeavrlaarGeG....slvaslvtadpevarqfilgl 436
                  e+++  +Ge++ r    G + a a+       + +  al ++er a++++  +y++e+++++  ++ at G     +  ++  ++  +   +  +      + l +    ++  ++g    +h + p +G+   +  +nfP++  l+   Pa+laG  +++k   +  ++ + + + +   g+   P   l++ v +   l        + +ftGs     + ++ + a+ + l+ + +f a +      +aa     lG ++      ++  ++ iv+    + +Gq c a++r++   a  +a     ++ + k + GdP++ +++lGpl   +   e++ + v+  la ga+v++g+++                   G ff Ptlll  +p    +   e+fGP+  +   d     + + vr+a    G    +l as+ t d   a+ f+ ++
  MMETSP1137-20121227|5755_1 102 NEIRNLYSGEIIERRPFVGREEAMATVGILSERQSKWGALPLEERVARIRDGVAYINEHRKQVaNDIVATVGKPLSQAESEVAASVKKMQYLCESAD-----EALAP---RMSTGQRGEIYETHRV-P-KGIVDIVAPWNFPMFTALNGAIPALLAGNGVILKHQ-SVPRIGDWFARAFGTEGVsrAPLEHLHIDVPTSSWLAASAAPIAHRVFTGSVrggrEVSQSISARAANLSLATPFVATSlelGGCDAAYvhadLGSEAAXPRXALNSCARFIVQlGRLSNTGQSCCAVKRAILHSAAYDAWCALATEEMSKFVAGDPARRETTLGPLYGGGAaCEALLELVEDALALGARVVVGGEDVSAlshsarrercvfqersGHFFRPTLLLDAKPPMRCLR-EESFGPLLPVQRLDtpsvGQPDEVRFAVEAVGdtpfALTASVWTLDSLFADAFVREV 549
                 5677777888888888888877777766677778888899999999999998889888766652568888888888888888888877654443333.....34433...3444566666777743.3.577777788************************976.466788888888877776335777788778888888888888889999999722224566666666666666677664411133333322333899999889999999999998446799**********************9999*********************9877515788999**************9998778899*********************99999777765.69***9987754331111355666666554442233799**********99998776 PP

>> TIGR01236  D1pyr5carbox1: 1-pyrroline-5-carboxylate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.1   0.0   3.3e-18   1.1e-15      68     456 ..     121     538 ..     110     582 .. 0.82

  Alignments for each domain:
  == domain 1    score: 55.1 bits;  conditional E-value: 3.3e-18
   TIGR01236  68 eedvkkaveaaldakkeWselpfadraaiflkaadllsgkyreeilaatmlgqsktvyqaeidavaelidffrfnvkyarelleqqPsvsapgelnkveyrpleGfvaaisPfnftaiaanlagaPalm.GnvvvWkPsktavlsnyllmkileeaGlPpgvinfvpadgvkvsdvvladkdlaalhftGstavfkelwkkvasnldk...yrnfPrivGetGGkdfvlvhp.....sadveevvaatir.....gafeyqGqkcsaasrlyvpkslwkelkeellaelkkvkvgdvddlssfmgavide.ksfakivkviekakkdpeeleilaGGk...............yddskGyfvePtvveskdPkeklmkeeifGPvltvyvyddd...kykeilevvdst..skyaltGavfakd 456
                 +e+++++v    + +++W +lp+++r a        +  ++r++++  ++   +k   qae + va  +  +++  + a e l+ + s+ + ge+ ++ +r  +G v  ++P+nf   +a   + Pal+ Gn v+ k  ++  + ++   + +   G+ ++ ++ + +d  + s  + +   +a  +ftGs++  +e+ + ++ +  +      f   + e GG d   vh+     +a  + +  +  r     g +   Gq c a+ r+ +  + ++   +   +e++k   gd+   ++ +g++     + + + +++e+a +     ++++GG+               + +  G+f +Pt+++  +P  + ++ee fGP+l v   d     + +e+   v+    + +alt +v + d
  MMETSP1137-20121227|5755_1 121 REEAMATVGILSERQSKWGALPLEERVARIRDGVAYI-NEHRKQVANDIVATVGKPLSQAESE-VAASVKKMQYLCESADEALAPRMSTGQRGEIYET-HRVPKGIVDIVAPWNFPMFTALNGAIPALLaGNGVILKHQSVPRIGDWF-ARAFGTEGVSRAPLEHLHIDVPTSSWLAASAAPIAHRVFTGSVRGGREVSQSISARAANlslATPFVATSLELGGCDAAYVHAdlgseAAXPRXALNSCARfivqlGRLSNTGQSCCAVKRAILHSAAYDAWCALATEEMSKFVAGDPARRETTLGPLYGGgAACEALLELVEDALALG--ARVVVGGEdvsalshsarrercvFQERSGHFFRPTLLLDAKPPMRCLREESFGPLLPVQRLDTPsvgQPDEVRFAVEAVgdTPFALTASVWTLD 538
                 67888899999999************99776666665.578999******************9.78888999************99999999999887.57779***********9998877778997659*******9999999986.5778888*************9999999999999********************876555322677888889***********744333577777777777644444677789**********99999999999999999*********9999999999975267889999****99855..7889998644444433333343346778******************************998776455566776666653226788888888766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (615 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        95  (0.0231594); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                        12  (0.0029254); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.80u 0.20s 00:00:01.00 Elapsed: 00:00:00.87
# Mc/sec: 933.03
//
Query:       MMETSP1137-20121227|5756_1  [L=578]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.2e-24   82.6  22.7    8.7e-24   82.1  15.7    1.2  1  TIGR00813 sss: transporter, solute:sodium symporter (SSS) family
    1.9e-22   77.4  19.4    2.6e-22   77.0  13.5    1.1  1  TIGR02121 Na_Pro_sym: sodium/proline symporter
    8.8e-19   65.7  15.2    1.1e-18   65.4  10.5    1.1  1  TIGR02119 panF: sodium/pantothenate symporter
    2.5e-17   60.3  18.6    9.8e-12   41.9   1.6    2.2  2  TIGR03648 Na_symport_lg: probable sodium:solute symporter, VC_2705 subfamily


Domain annotation for each model (and alignments):
>> TIGR00813  sss: transporter, solute:sodium symporter (SSS) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.1  15.7   8.5e-27   8.7e-24       2     408 ..      92     484 ..      91     492 .. 0.81

  Alignments for each domain:
  == domain 1    score: 82.1 bits;  conditional E-value: 8.5e-27
   TIGR00813   2 flagrslgglvvaaslvasnisasqllGlpgeayasG...laiiflelaalvllivlgllfvpvyikagvltmpeylekRFgkrilrilsvlililviflkisvdlfsgalllelvlGl..dlylsllllalitilYtviGGlkAvvwtDtlqavimivgvlilpvvafsevgg.lesvvekakqaaptvvsvddllkleldpltsdlpwgalvfGliivallywcldqvivqRllaaksaksakkgvlisgvlkllpmllavlpGliaralytdvdpalagavqqasdqaypllvvellppglaglflav.llaAvlStlssilnsastvfteDlYkkiirkaaekekkivsrgrvavlvaiviaivvaaaqsgqvlqlvqsafgilgapllavfvLglfwkrvnakGAlvgl 408
                 f+ag+slg +v+ ++++as  s+ +++G+p ea+++G   l  i  +l +++ ++ ++     + + ++ ++  ++++ RF ++ lr  +++il++ ++++++++ +     +++++Gl  d   + +++ ++++++  iGGl++v++tD+ q+++mi+++++++    +  gg  +++++  +  apt + +  +++ +l   +  l w   ++ l++             qR++a+++ ks+k +  +  +   l ml+ v+ G +++ l +    +++   ++    ++ +l+ +     +agl++ v  +aA++St++s+l+++  +++  + ++ +++a+   +++  +++v+ + ++++++v+a+   g + +l +  +g+   ++ ++++  +f +r +  + ++++
  MMETSP1137-20121227|5756_1  92 FVAGKSLGSFVTVMTIFASLFSGXTMVGVPNEAFTDGykaLRWIPSKLFMAFGYMCTSPRLRRISLIRHYHSPLDFITDRFRSQFLRXSIFVILLVPSIIYLAAQPITLKGNFNDLFGLedDNVIAPVAICAFILVLEWIGGLNVVAYTDSAQGILMILAFVLMSSTLCHLYGGwGSDIFNPKTYPAPT-FFQVPSTEDQLAMWSFSLQW-ISFAALPHF-----------QQRTYASADFKSMKLAYFVISLAPWLTMLVGVFSGTLGVYLLQG---QET--SNPF-TGVVAELMSASGFGYVAGLLILVgSVAAIISTADSLLIATTHMVMSEVVNPAMKNASH--ARVSFVSKVVSFTVMALGLVIALTDDGALSDLAAVQNGMCLQAVPTLLIGLFFAPRYTPHAWIIAV 484
                 89***********************************666555555666666666666666667777788999********************************9999999*******4445677788889999999************************************555566555555553.33455556666666666777.666777777...........8*****************************************86...222..2223.34444555444446677766655269*************************9998888..999999*********************************999876555544556888876555444 PP

>> TIGR02121  Na_Pro_sym: sodium/proline symporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.0  13.5   2.6e-25   2.6e-22      30     442 ..      90     505 ..      83     529 .. 0.82

  Alignments for each domain:
  == domain 1    score: 77.0 bits;  conditional E-value: 2.6e-25
   TIGR02121  30 dyvlggrslgpfvaalsagasdmsgWlllGlPGalyvtGlsel.wiaiGlliGayinwklvakrlrvytevakdaitlPdflekrledkskvlrivsaliilvfftlytssGlvaGgklfesafGldyklalligali..vviytflGGflavswtdlvqgllmlvalvlvPivallklggls.eileaveaidpekldllkgasviaiisl.laWGlGyfGqPhiivrfmaiksakelkkarligisWmilsllGavlvglvGiayvekvpgvevadk..ekifillskvlfnPliaGl.llaailaaimstissqllvsssalaedlykallkkeasekelvlvgrlsvlvvaiiaivlalnpdssvlelvsyaWaGfGaafgpvvllslywk.r......ltragalagmvigavtvivwkeakl 442
                 +++++g+slg fv+ ++  as  sg  ++G+P   ++ G ++l wi   l +     ++  ++rlr  + +++    l df+++r+   s++lr    +i+lv  ++y ++  ++    f+  fGl+    +  +a++  +++  ++GG   v++td  qg+lm++a+vl+     +  gg++ +i++  +   p+ +++ +  + +a+ s  l W + +   Ph   r  a  + k++k a ++      l++l  v+ g +G+  ++ +   e++++    +  l+s   f  ++aGl +l   +aai+st +s l+ ++  ++ ++    +k +as+  +  v+++  + v+ + +v+al+ d  + +l +    G+     p +l+ l++  r      +   galag++++ v+   w+e + 
  MMETSP1137-20121227|5756_1  90 SHFVAGKSLGSFVTVMTIFASLFSGXTMVGVPNEAFTDGYKALrWIPSKLFMA--FGYMCTSPRLRRISLIRHYHSPL-DFITDRFR--SQFLRXSIFVILLVPSIIYLAAQPITLKGNFNDLFGLEDDNVIAPVAICafILVLEWIGGLNVVAYTDSAQGILMILAFVLMSSTLCHLYGGWGsDIFNPKTYPAPTFFQVPSTEDQLAMWSFsLQW-ISFAALPHFQQRTYASADFKSMKLAYFVISLAPWLTMLVGVFSGTLGVYLLQGQ---ETSNPftGVVAELMSASGFG-YVAGLlILVGSVAAIISTADSLLIATTHMVMSEVVNPAMK-NASHARVSFVSKVVSFTVMALGLVIALTDDGALSDLAAV-QNGMCLQAVPTLLIGLFFApRytphawIIAVGALAGFITTVVINYTWNEKED 505
                 67899***********************************9865998888764..4799**********777665554.9******6..78999877778888899********9999********88766654444311666789***************************9999999997257777888899*******99999999852666.8999*********************998777778999999*******9888876...44444315555566666665.66665168899*************9999999999988776.577888899*******************99999998765.6899999999999999975232222224567888888888888888877544 PP

>> TIGR02119  panF: sodium/pantothenate symporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.4  10.5     1e-21   1.1e-18       5     415 ..      52     471 ..      48     524 .. 0.77

  Alignments for each domain:
  == domain 1    score: 65.4 bits;  conditional E-value: 1e-21
   TIGR02119   5 ipliiylvlvfliaiyaskkkqktds.........flqeyflGnrslgGfvlamtlvatyvsassfigGpGiayklG...lGwvllamiqvptvylvlgvlGkkfailarklnavtlvdllkaryknkllvllsslsllvfllsaivaqfiGGarllesltGlsyltal..llfslsvliyvliGGfravvltdalqgivmllgtiilliavikaggGve.kiveklkeidpnlvtpfgadgsldkafvasfwilvgiGvvglpqiavralsykdskalhraliigtivvgilmlgmhlvGvlgravlpdlkvsd...kvipllalkvlppilaGif.laaplaaimstvdsllllssstlikdlylnylekeakekkvkkisllitlllgllvllaalkppdliiwlnlfalGGleaaflwplvlGlyw 415
                 +pl   ++ +++i  + +k k+++++          +  +f+ ++slg fv  mt+ a+  s  +++g p  a+  G   l w+  + + ++ +y++ +   ++++++  ++++    d++ +r+++++l     ++llv  +  ++aq i     ++ l Gl  ++ +  +  ++ +l+   iGG+  v+ td+ qgi+m+l+ +++  ++ +  gG   +i +  +   p + +  +++++l++   +  wi       +lp+   r+ +  d k+++ a  + ++   + ml   + G lg  +l + + s+    v+  l+     +++aG++ l + +aai+st dsll+ ++ +++ ++ +n   k+a++ +v+ +s ++++ + +l l++al     +  l  +   G+    + +l++Gl++
  MMETSP1137-20121227|5756_1  52 LPLYFTMFGIMGILGWRTKAKRASSQpkedldgegEMVSHFVAGKSLGSFVTVMTIFASLFSGXTMVGVPNEAFTDGykaLRWI-PSKLFMAFGYMCTSPRLRRISLIR-HYHS--PLDFITDRFRSQFLRXSIFVILLVPSIIYLAAQPITLKGNFNDLFGLEDDNVIapVAICAFILVLEWIGGLNVVAYTDSAQGILMILAFVLMSSTLCHLYGGWGsDIFNPKTYPAPTFFQVPSTEDQLAMWSFSLQWI----SFAALPHFQQRTYASADFKSMKLAYFVISLAPWLTMLVGVFSGTLGVYLLQGQETSNpftGVVAELMSASGFGYVAGLLiLVGSVAAIISTADSLLIATTHMVMSEV-VNPAMKNASHARVSFVSKVVSFTVMALGLVIALTDDGALSDLAAVQN-GMCLQAVPTLLIGLFF 471
                 6666666656655555555544443322222222245568**********************************9884446676.577889999999999999999985.5543..57************9988889999999999*****************98876611455566788889*********************99999888888888851577777778899998777777787666666665....5679*******************998888887788888889**********99998733358999999*********8527899***********999888877776.899999*******************9999999987666555544433.3333444455555554 PP

>> TIGR03648  Na_symport_lg: probable sodium:solute symporter, VC_2705 subfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.9   1.6   9.6e-15   9.8e-12      24     192 ..      88     261 ..      84     271 .. 0.83
   2 !   23.7   6.0     3e-09   3.1e-06     360     482 ..     375     498 ..     361     525 .. 0.79

  Alignments for each domain:
  == domain 1    score: 41.9 bits;  conditional E-value: 9.6e-15
   TIGR03648  24 tkefyvagrkvpavanGmAtaadWmsaAsfismagliallGydglaylmG...WtgGyvllalllApylRkfg...kftvp.dfvgdRyysktaRlvaviaailisftYvvgqirgvGvvfsrflev..dielgvliglavvlvyavlgGmkgvtytqvaqyvvlivaylvpvvflsl 192
                 +  ++vag+++ +++  m + a  +s    +++       Gy++l ++        Gy    ++  p lR+ +   ++  p df+ dR+ s+  R    +++++ s++Y+++q   +   f  ++++  d  ++ +   a +lv   +gG+  v+yt  aq +++i+a+++    l +
  MMETSP1137-20121227|5756_1  88 MVSHFVAGKSLGSFVTVMTIFASLFSGXTMVGVPNEAFTDGYKALRWIPSklfMAFGY----MCTSPRLRRISlirHYHSPlDFITDRFRSQFLRXSIFVILLVPSIIYLAAQPITLKGNFNDLFGLedDNVIAPVAICAFILVLEWIGGLNVVAYTDSAQGILMILAFVLMSSTLCH 261
                 56789***************************************99874411133344....78899999986444677777**************9999*************88877777777665215555556667889999*************************98877765 PP

  == domain 2    score: 23.7 bits;  conditional E-value: 3e-09
   TIGR03648 360 evvialvaAGglaAAlstaaGLllvissaisHDllkkllnpkasekkrllvarvallvviviaaylalnkpgfiaqvvalAFglaaaslFpalvlGifwk.rankegai..agmlaGllvtllyiv 482
                 +v   l+  G++aA +sta+ Ll++ +  +  ++++  + ++as+++  +v++v+ ++v+++  ++al++ g ++++ a+  g+  +++ p+l++G+f   r + ++ i  +g laG+++t++  +
  MMETSP1137-20121227|5756_1 375 YVAGLLILVGSVAAIISTADSLLIATTHMVMSEVVNPAM-KNASHARVSFVSKVVSFTVMALGLVIALTDDGALSDLAAVQNGMCLQAV-PTLLIGLFFApRYTPHAWIiaVGALAGFITTVVINY 498
                 444446889***************999888888877655.57888888899*********************************98875.9*****986437777765522578888887765433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (578 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       162  (0.0394929); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.43u 0.12s 00:00:00.55 Elapsed: 00:00:00.56
# Mc/sec: 1362.32
//
Query:       MMETSP1137-20121227|5758_1  [L=656]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (656 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        72  (0.0175524); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.16s 00:00:00.55 Elapsed: 00:00:00.39
# Mc/sec: 2220.12
//
Query:       MMETSP1137-20121227|5759_1  [L=116]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (116 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        91  (0.0221843); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.15s 00:00:00.29 Elapsed: 00:00:00.32
# Mc/sec: 478.46
//
Query:       MMETSP1137-20121227|5760_1  [L=390]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   4.5e-114  378.5   0.0   5.3e-114  378.3   0.0    1.1  1  TIGR00433 bioB: biotin synthase
    1.1e-16   58.5   0.0    1.4e-16   58.2   0.0    1.1  1  TIGR03910 pyrrolys_PylB: pyrrolysine biosynthesis radical SAM protein
    1.3e-16   58.5   0.0    1.7e-16   58.1   0.0    1.1  1  TIGR03957 rSAM_HmdB: 5,10-methenyltetrahydromethanopterin hydrogenase cofactor biosynthesis protein HmdB
    2.2e-12   44.6   0.3      7e-12   43.0   0.2    1.7  1  TIGR03550 F420_cofG: 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofG subunit
    2.4e-09   34.7   0.0    3.2e-09   34.3   0.0    1.0  1  TIGR03956 rSAM_HydE: [FeFe] hydrogenase H-cluster radical SAM maturase HydE
    8.7e-08   29.3   0.3    3.1e-07   27.5   0.2    1.8  2  TIGR02666 moaA: molybdenum cofactor biosynthesis protein A
    1.3e-07   28.8   0.3    2.6e-07   27.8   0.2    1.4  1  TIGR02668 moaA_archaeal: probable molybdenum cofactor biosynthesis protein A
    1.4e-06   25.6   0.0    2.4e-06   24.9   0.0    1.2  1  TIGR00510 lipA: lipoyl synthase
    1.7e-05   21.6   0.4    0.00013   18.8   0.3    2.4  2  TIGR03551 F420_cofH: 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit
    0.00053   16.7   0.0     0.0037   14.0   0.0    2.1  1  TIGR03699 mena_SCO4550: menaquinone biosynthesis protein, SCO4550 family
     0.0024   15.1   0.9      0.008   13.4   0.5    1.9  1  TIGR04055 rSAM_NirJ2: putative heme d1 biosynthesis radical SAM protein NirJ2
     0.0028   14.8   0.0       0.02   11.9   0.1    2.0  2  TIGR00423 TIGR00423: radical SAM domain protein, CofH subfamily
     0.0056   13.5   0.2      0.012   12.4   0.1    1.6  1  TIGR03470 HpnH: hopanoid biosynthesis associated radical SAM protein HpnH
  ------ inclusion threshold ------
      0.017   11.8   0.0      0.025   11.3   0.0    1.2  1  TIGR04068 rSAM_ocin_clost: Cys-rich peptide radical SAM maturase CcpM
      0.024   11.0   0.1      0.032   10.6   0.0    1.1  1  TIGR03904 SAM_YgiQ: uncharacterized radical SAM protein YgiQ
      0.036   10.8   0.0        0.3    7.8   0.0    2.0  2  TIGR03700 mena_SCO4494: putative menaquinone biosynthesis protein, SCO4494 family


Domain annotation for each model (and alignments):
>> TIGR00433  bioB: biotin synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  378.3   0.0  2.1e-116  5.3e-114       3     295 ..      73     370 ..      71     371 .. 0.98

  Alignments for each domain:
  == domain 1    score: 378.3 bits;  conditional E-value: 2.1e-116
   TIGR00433   3 laeeeleelleaAqeirrkff.gnkvelcsllnaksGkCpedCkyCaQsahykteiekykllseeevleeakkakeegakrfclvasgrel..kekelekvleaveeikeelglevcaslGllseeqakkLkeagvdrynhNletsesyyeeiitthtyedrletikavrkaglevCsGgiiGlgEsledrielalelaele..vesvPiNfLvpikgtplekaeeldpeeilrtialfRlvlPkaeirlagGReelleelqalallaGansilvgd.lLttkgreaeedlelleklgl 295
                 +++ +++ell++A +++r++f + +v+ c+ll++k+G+C edCkyCaQs++ykt ++ ++++s+++vle+ak+ake+g +rfc+++++rel  k+  + k+l++v+e++++ glevc++lG++s+eqa+ Lk+ag+++ynhNl+ts+++y+++itt++y+drl+ti++vr+ag++vC+Ggi+GlgE+++dri l+ ela++   +esvP+N+Lvpi+gtpl  +++ d +++ rtia++R+++P++++rl++GR + +   q+++++aGansi+ gd lLtt ++  +ed +l+++lg+
  MMETSP1137-20121227|5760_1  73 IYRMPFTELLHRAGTVHRQNFnPLEVQKCTLLSIKTGGCNEDCKYCAQSTRYKTFVKPQPMMSVDDVLEAAKRAKESGSTRFCMGTAWRELgnKKGAFGKILTMVSEVNSM-GLEVCCTLGMVSKEQARDLKQAGLTAYNHNLDTSREHYPNVITTRSYDDRLQTIANVREAGISVCCGGILGLGETEDDRIGLLHELATMPehPESVPVNALVPIDGTPLDVNSPPDVFQMARTIATARIIMPRSMVRLSAGRMSFSPLEQTVMFMAGANSIFSGDkLLTTPNPGKDEDAQLFDSLGI 370
                 68899****************999******************************************************************9656678**************.*****************************************************************************************999********************************************************************************************997 PP

>> TIGR03910  pyrrolys_PylB: pyrrolysine biosynthesis radical SAM protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.2   0.0   5.4e-19   1.4e-16      65     288 ..     110     334 ..      57     352 .. 0.84

  Alignments for each domain:
  == domain 1    score: 58.2 bits;  conditional E-value: 5.4e-19
   TIGR03910  65 yckndcafcyyrksneaiery..rktreeikeiaraladsgvhlidltmGedPlyfedp.egferllelvrkvkeetglPvmisPGvvdnevlkklkeaGadfyalyqetydrelyeklrvgqsfderlaskrlakklGylieeGlltgvgddiedivkslrelksl..dadqvrvmtfvPqkgtPlegvkaesnlkelkiiailrllfPdrliPasldveGldGlker 288
                  c +dc++c    + +++ +     + ++++e+a+  ++sg     + mG     + +    f ++l +v +v +++gl v  + G+v++e  + lk+aG + y    +t  re y  +   +s+d+rl++    ++ G+ +  G + g+g++ +d +  l+el+++  +++ v v ++vP +gtPl   + ++ ++  + ia  r+++P  ++  s      + l++ 
  MMETSP1137-20121227|5760_1 110 GCNEDCKYCAQSTRYKTFVKPqpMMSVDDVLEAAKRAKESGST--RFCMGTAWRELGNKkGAFGKILTMVSEV-NSMGLEVCCTLGMVSKEQARDLKQAGLTAYNHNLDT-SREHYPNVITTRSYDDRLQTIANVREAGISVCCGGILGLGETEDDRIGLLHELATMpeHPESVPVNALVPIDGTPLDVNSPPDVFQMARTIATARIIMPRSMVRLSAGRMSFSPLEQT 334
                 499******9888777665541157889*************86..679999887776662569*********9.589***************************999988.6899****************************99999***************999744689***************************************999887766666666654 PP

>> TIGR03957  rSAM_HmdB: 5,10-methenyltetrahydromethanopterin hydrogenase cofactor biosynthesis protein HmdB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.1   0.0   6.7e-19   1.7e-16      49     278 ..     110     344 ..      70     347 .. 0.80

  Alignments for each domain:
  == domain 1    score: 58.1 bits;  conditional E-value: 6.7e-19
   TIGR03957  49 rvrpkcaycGfaaGtskeGyyesf.tktdeeikeaakaieesGiprvscsgahGygGkeav...kaarivkents..lellinvGadlteesieklakydvdticcnletvneelfkklkpGeeledrirvcelvdkigielssGlliGiGesyedrlehlkflkrfetlge.ipimGfnpypGtpmeehpkcslleqiktiavtrllypd..iritvptptiGpeevefallaGadnl 278
                   +  c yc     t  + + ++  + + +++ eaak  +esG  r    +a+   G++     k + +v e  s  le+   +G  +++e  ++l++ ++ +   nl+t  +e + ++    + +dr++    v ++gi + +G ++G+Ge  +dr+  l+ l+ + +  e +p+  + p +Gtp++   +  + + ++tia +r++ p   +r+++   +  p e  + ++aGa+ +
  MMETSP1137-20121227|5760_1 110 GCNEDCKYCA--QSTRYKTFVKPQpMMSVDDVLEAAKRAKESGSTRFCMGTAWRELGNKKGafgKILTMVSEVNSmgLEVCCTLGM-VSKEQARDLKQAGLTAYNHNLDTS-REHYPNVITTRSYDDRLQTIANVREAGISVCCGGILGLGETEDDRIGLLHELATMPEHPEsVPVNALVPIDGTPLDVNSPPDVFQMARTIATARIIMPRsmVRLSAGRMSFSPLEQTVMFMAGANSI 344
                 4567799994..5566666666542567899****************9999*9666655430125666777766522666677775.789999****************96.677899999*******************************************9987665549**************99999*****************83356667777888999999999999865 PP

>> TIGR03550  F420_cofG: 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofG subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.0   0.2   2.7e-14     7e-12      12     239 ..     109     318 ..     104     343 .. 0.82

  Alignments for each domain:
  == domain 1    score: 43.0 bits;  conditional E-value: 2.7e-14
   TIGR03550  12 rlCrnkCgYCtfreepeeaeaa..llspeevleivrkgaeaGckeaLftlGekpeeryeeareeLeelgydsileYlaelselvleetgllPhtnaGvlskeelkklkevnasmGlmlettserlekgeahke..spdkePavrlevieeaGklkvPfttGiLiGiGetveeraesllairelhekyghiqevivqnfrakegtamenakepsleellktvavarlilpeev 239
                   C + C+YC+ +++ ++  +   ++s ++vle +++++e G++   f +G      ++e+ +  ++  + +il  + e++++ le          G++ske+ + lk+        l   ++ l++++ h+      ++ + rl++i++  +  +    G ++G+Get ++r+  l++++++ e   h   v v  + + +gt+++ +++p++ ++++t+a+ar+i+p ++
  MMETSP1137-20121227|5760_1 109 GGCNEDCKYCAQSTRYKTFVKPqpMMSVDDVLEAAKRAKESGSTR--FCMGTA----WRELGN--KKGAFGKILTMVSEVNSMGLEV-----CCTLGMVSKEQARDLKQAG------LTAYNHNLDTSREHYPnvITTRSYDDRLQTIANVREAGISVCCGGILGLGETEDDRIGLLHELATMPE---HPESVPVNALVPIDGTPLDVNSPPDVFQMARTIATARIIMPRSM 318
                 56********98877665433234******************986..899975....555544..4677999999999998888843.....4567************964......34555666666666641146788899********************************9999999886...667789**********************************9876 PP

>> TIGR03956  rSAM_HydE: [FeFe] hydrogenase H-cluster radical SAM maturase HydE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.3   0.0   1.3e-11   3.2e-09      32     289 ..      82     344 ..      59     352 .. 0.79

  Alignments for each domain:
  == domain 1    score: 34.3 bits;  conditional E-value: 1.3e-11
   TIGR03956  32 kekarevrekvyg.nkvyirgliel.tnyckndcyycGirksnknver..yrlskeeilecckeGyelGfrtfvlqGGedplft.de...kiveivkkikeeypdcaitlslGekskesykkyfeaGadryllrhetaneehyeklhPeelslenrkqclkdlkeigyqvGtGlmvgspyqtvee..laedllflkelkPemvGiGPfiphkdtpfakekaGtleltllllsllrlllpkvllPattalgtiepkGrekgilaGanvv 289
                  ++a +v++++++  +v    l+ + t  c+ dc yc   +  k+  +    +s +++le++k+  e G   f +     +l + +    ki ++v+++++   ++  t  lG  ske+ + +++aG   y    +t  +ehy ++   + s++ r+q +++++e g  v +G ++g      ++  l+++l  + e +Pe v +   +p   tp+  ++  ++ +    ++  r+++p+ ++   +   + +p  +   ++aGan +
  MMETSP1137-20121227|5760_1  82 LHRAGTVHRQNFNpLEVQKCTLLSIkTGGCNEDCKYCAQSTRYKTFVKpqPMMSVDDVLEAAKRAKESGSTRFCMGTAWRELGNkKGafgKILTMVSEVNSMGLEVCCT--LGMVSKEQARDLKQAGLTAYNHNLDTS-REHYPNVIT-TRSYDDRLQTIANVREAGISVCCGGILGLGETEDDRigLLHELATMPE-HPESVPVNALVPIDGTPLDVNSPPDVFQMARTIATARIIMPRSMVRLSAGRMSFSPLEQTVMFMAGANSI 344
                 55555555555552466666777764678********98877776554115799********************97665444441221115777777777776666665..577899999***********9888875.689999875.6799********************988865544443226778887776.8*******************************************99999999999999999999999987 PP

>> TIGR02666  moaA: molybdenum cofactor biosynthesis protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0       1.6     4e+02     159     176 ..      56      73 ..      24      77 .. 0.73
   2 !   27.5   0.2   1.2e-09   3.1e-07      17     156 ..     108     246 ..     103     272 .. 0.82

  Alignments for each domain:
  == domain 1    score: -2.5 bits;  conditional E-value: 1.6
   TIGR02666 159 KlNtVvlkgvnddeivdl 176
                  +N+Vv +++ ++ei ++
  MMETSP1137-20121227|5760_1  56 AINAVVRNDWTREEIAAI 73 
                 489999999999999876 PP

  == domain 2    score: 27.5 bits;  conditional E-value: 1.2e-09
   TIGR02666  17 tdrCnlrCvYCmpeeakleflekeelLtleeierlvklavklgvekvRl.TGGEPllrkd..lvelvarlaklegieledialttNgllLerkakaLkeaGlkrvnvSLDsLdaekfkkitrrsgklekvlegieaaleaglk 156
                 t  Cn  C+YC +++  ++f++ + +++++++ + +k a + g ++  + T    l +k+  + +++ ++++++++   +++  t g++ +++a++Lk+aGl+  n  LD+ +++  + it+r  + ++ l+ i ++ eag++
  MMETSP1137-20121227|5760_1 108 TGGCNEDCKYCAQSTRYKTFVKPQPMMSVDDVLEAAKRAKESGSTRFCMgTAWRELGNKKgaFGKILTMVSEVNSMG-LEVC-CTLGMVSKEQARDLKQAGLTAYNHNLDTSREHYPNVITTR--SYDDRLQTIANVREAGIS 246
                 667***********99999************************7776662443444333223778888888888866.6666.468*************************999999999955..6999999**999999987 PP

>> TIGR02668  moaA_archaeal: probable molybdenum cofactor biosynthesis protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.8   0.2     1e-09   2.6e-07      17     149 ..     108     246 ..     100     273 .. 0.78

  Alignments for each domain:
  == domain 1    score: 27.8 bits;  conditional E-value: 1e-09
   TIGR02668  17 tkeCnleCvyCHkeGeees...aeeelsaeeiervvrvakelGvrkvkltGGEPll...RkDleeiierikkeeikevsl.ttnGilLeklakkLkeaGLdRvnvSldtldeekykkitsrdaleevlegiekAvdvglt 149
                 t  Cn +C yC +  + ++    + ++s +++ + ++ ake G +++ +      l   +  + +i++ +++++ + + +  t G++ ++ a++Lk+aGL   n  ldt   e+y ++ +++++++ l+ i +  ++g++
  MMETSP1137-20121227|5760_1 108 TGGCNEDCKYCAQSTRYKTfvkPQPMMSVDDVLEAAKRAKESGSTRFCMGTAWRELgnkKGAFGKILTMVSEVNSMGLEVcCTLGMVSKEQARDLKQAGLTAYNHNLDTSR-EHYPNVITTRSYDDRLQTIANVREAGIS 246
                 668**********9998888877899*******************999976555442223345566666665555555432689************************965.566555555599999******9999997 PP

>> TIGR00510  lipA: lipoyl synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.9   0.0   9.2e-09   2.4e-06      72     232 ..     110     270 ..      93     274 .. 0.76

  Alignments for each domain:
  == domain 1    score: 24.9 bits;  conditional E-value: 9.2e-09
   TIGR00510  72 ictrrcrfcdvatg.rkPlkPdpeepe....klaeaikdlglkyvvitsvdrddledgGashlaeivkaikekaPnikievlvsdfrGelkaldkladapldvynhnletverltkevrdkadyrrslkllerakealPnlitksglmvGlGeteeeilqvlkdlr 232
                  c   c++c  +t  ++ +kP p+ ++    + a+ +k+ g     + +  r+  + +Ga  + +i++ + e + ++ +ev ++    +++    l++a+l  ynhnl+t    +++v    +y+  l+ + +++ea  +     g ++GlGete++ +  l++l+
  MMETSP1137-20121227|5760_1 110 GCNEDCKYCAQSTRyKTFVKPQPMMSVddvlEAAKRAKESGSTRFCMGTAWRELGNKKGA--FGKILTMVSEVN-SMGLEVCCTLGMVSKEQARDLKQAGLTAYNHNLDTSREHYPNVITTRSYDDRLQTIANVREAGIS--VCCGGILGLGETEDDRIGLLHELA 270
                 588999999876652467899997654211134555566667777888888887777776..777777776554.56788877766666677788****************************************98655..5568889*******9999999887 PP

>> TIGR03551  F420_cofH: 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0       1.1   2.8e+02     110     133 ..      79     102 ..      44     109 .. 0.75
   2 !   18.8   0.3     5e-07   0.00013      46      96 ..     108     160 ..      68     348 .. 0.80

  Alignments for each domain:
  == domain 1    score: -2.1 bits;  conditional E-value: 1.1
   TIGR03551 110 kavkeevpeihihafsPlevaqga 133
                  ++ +++  +h   f+Plev++++
  MMETSP1137-20121227|5760_1  79 TELLHRAGTVHRQNFNPLEVQKCT 102
                 455566788899999999999875 PP

  == domain 2    score: 18.8 bits;  conditional E-value: 5e-07
   TIGR03551  46 tnvCvtkCkFCafrkektd..aeayklsleevaekaaeakkagatevciqgGl 96 
                 t  C+ +Ck+Ca +++ +   +   ++s+++v e a++ak++g t  c+ +  
  MMETSP1137-20121227|5760_1 108 TGGCNEDCKYCAQSTRYKTfvKPQPMMSVDDVLEAAKRAKESGSTRFCMGTAW 160
                 667**********99988765556789*********************96654 PP

>> TIGR03699  mena_SCO4550: menaquinone biosynthesis protein, SCO4550 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.0   1.4e-05    0.0037       4     100 ..      66     161 ..      63     347 .. 0.67

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 1.4e-05
   TIGR03699   4 sreealeLlkeadleelgklAdevrkkllpedvvtfvvdrniNYtniCvvkCkfCaFyrkpke..keaYvlsveeilkkieelvelGgtqillqGGvnp 100
                 +ree+ ++++  +++el ++A +v+++ ++   v   +   i  t  C+ +Ck+Ca   + k   k   ++sv+++l+  ++++e G t+  + G    
  MMETSP1137-20121227|5760_1  66 TREEIAAIYR-MPFTELLHRAGTVHRQNFNPLEVQKCTLLSI-KTGGCNEDCKYCAQSTRYKTfvKPQPMMSVDDVLEAAKRAKESGSTRFCM-GTAWR 161
                 78999****9.*************999997766666666666.5999*********876655422566789*****************99877.44444 PP

>> TIGR04055  rSAM_NirJ2: putative heme d1 biosynthesis radical SAM protein NirJ2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.5   3.1e-05     0.008      62     139 ..     173     246 ..     103     270 .. 0.82

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 3.1e-05
   TIGR04055  62 iyeliayatkkglrvvlgtnGtliteevakklkeaGvqrvgisldsldaekhdkfrklegafeeavegienlreagle 139
                 i ++++  +++gl v  +t G ++++e a++lk+aG+++    ld++ ++  + +  + +++++ +++i+n+reag++
  MMETSP1137-20121227|5760_1 173 ILTMVSEVNSMGLEV-CCTLG-MVSKEQARDLKQAGLTAYNHNLDTSREHYPNVI--TTRSYDDRLQTIANVREAGIS 246
                 566677777777764.44555.89*********************9877666654..6789***************97 PP

>> TIGR00423  TIGR00423: radical SAM domain protein, CofH subfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.9   0.1   7.9e-05      0.02      14      60 ..     110     158 ..     106     182 .. 0.87
   2 ?    0.2   0.0       0.3        76     214     262 ..     294     343 ..     218     347 .. 0.69

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 7.9e-05
   TIGR00423  14 iCvekCkfCaFkarekd..kdaYllsleeilekvkeavekGatevliqg 60 
                  C e+Ck+Ca + r k   k   ++s +++le +k a+e G t  ++ +
  MMETSP1137-20121227|5760_1 110 GCNEDCKYCAQSTRYKTfvKPQPMMSVDDVLEAAKRAKESGSTRFCMGT 158
                 5*********99998863356789********************99865 PP

  == domain 2    score: 0.2 bits;  conditional E-value: 0.3
   TIGR00423 214 vkkkasaieaLkvlAisRillk.nikniqasWvklGlklaqvalefGanD 262
                 v++ ++ +++ +++A +Ri++   +  + a  +       +v    Gan 
  MMETSP1137-20121227|5760_1 294 VNSPPDVFQMARTIATARIIMPrSMVRLSAGRMSFSPLEQTVMFMAGANS 343
                 45678899999999999999987777777776666666666666667665 PP

>> TIGR03470  HpnH: hopanoid biosynthesis associated radical SAM protein HpnH
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.4   0.1   4.9e-05     0.012      37     175 ..     110     257 ..      75     273 .. 0.75

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 4.9e-05
   TIGR03470  37 rcnlacaGcGkidypaeilk..rrlsveecleav...decgaPvvsia......GGePllhkeideivrelvarkkfvylctnalllekkldkfepspyltfsvhldGlrekhdksvekeGvfdkaveaikkakarGfrvttnttlfede 175
                  cn  c+ c + +++++ +k   ++sv++ lea+   +e+g+   ++       G +   + +i  +v e+ +       ct +++ +++  +++ +   +++  ld +re++ ++++   ++d  +++i ++++ G  v+    l  +e
  MMETSP1137-20121227|5760_1 110 GCNEDCKYCAQSTRYKTFVKpqPMMSVDDVLEAAkraKESGSTRFCMGtawrelGNKKGAFGKILTMVSEVNSMGLE-VCCTLGMVSKEQARDLKQAGLTAYNHNLDTSREHYPNVITT-RSYDDRLQTIANVREAGISVCCGGILGLGE 257
                 59999999999999999887324799998887752225777665555311222244455666777888887665554.57*******************************99888776.579*****************9877665444 PP

>> TIGR04068  rSAM_ocin_clost: Cys-rich peptide radical SAM maturase CcpM
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   9.7e-05     0.025      91     120 ..     108     137 ..      54     148 .. 0.86

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 9.7e-05
   TIGR04068  91 tqeCnlRCkYCvYsGsyenRvHsnkrmsle 120
                 t  Cn  CkYC+ s +y++ v  +  ms++
  MMETSP1137-20121227|5760_1 108 TGGCNEDCKYCAQSTRYKTFVKPQPMMSVD 137
                 789*******************99999987 PP

>> TIGR03904  SAM_YgiQ: uncharacterized radical SAM protein YgiQ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   0.00012     0.032     260     328 ..      64     136 ..      28     157 .. 0.79

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 0.00012
   TIGR03904 260 plsteeldevyelpyereaHpsykkk..kipaleeikfsvtshr..GCfGgCsFCaiteHqgriiqsRseesi 328
                   ++ee+ ++y++p++   H + + +  + + le  k+ + s +  GC  +C++Ca ++   ++++     s+
  MMETSP1137-20121227|5760_1  64 DWTREEIAAIYRMPFTELLHRAGTVHrqNFNPLEVQKCTLLSIKtgGCNEDCKYCAQSTRYKTFVKPQPMMSV 136
                 56899***************975433237888888888776654449*********98887777776655554 PP

>> TIGR03700  mena_SCO4494: putative menaquinone biosynthesis protein, SCO4494 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   0.0    0.0012       0.3      55     103 ..     108     158 ..      69     183 .. 0.84
   2 ?    0.7   0.0      0.16        42     189     275 ..     232     314 ..     201     317 .. 0.77

  Alignments for each domain:
  == domain 1    score: 7.8 bits;  conditional E-value: 0.0012
   TIGR03700  55 tniCvnaCkfCafqrekge..egayalsleeivekakeaeakgltelhivg 103
                 t  C ++Ck+Ca + + +   +    +s+++++e ak+a+++g t   + +
  MMETSP1137-20121227|5760_1 108 TGGCNEDCKYCAQSTRYKTfvKPQPMMSVDDVLEAAKRAKESGSTRFCMGT 158
                 556*********988776532555689**************9999877655 PP

  == domain 2    score: 0.7 bits;  conditional E-value: 0.16
   TIGR03700 189 kWleihreahelGlktnatmLyGhieekaervdhllrlrelqdktgG..fqafipLafqkdnnklkkekekkpsgleaLktlavsrlll 275
                 + l+  +++ e+G+   +  + G  e++ +r+  l+ l  + ++      +a +p+    d++ l+ +  + p+  ++ +t+a +r+++
  MMETSP1137-20121227|5760_1 232 DRLQTIANVREAGISVCCGGILGLGETEDDRIGLLHELATMPEHPESvpVNALVPI----DGTPLDVN--SPPDVFQMARTIATARIIM 314
                 55677778899999999999999999999999999999888765543114555554....67777777..6777788888888888875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (390 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       191  (0.0465627); expected 82.0 (0.02)
Passed bias filter:                      175  (0.0426621); expected 82.0 (0.02)
Passed Vit filter:                        44  (0.0107265); expected 4.1 (0.001)
Passed Fwd filter:                        16  (0.00390054); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              16  [number of targets reported over threshold]
# CPU time: 0.56u 0.17s 00:00:00.73 Elapsed: 00:00:00.66
# Mc/sec: 779.94
//
Query:       MMETSP1137-20121227|5761_1  [L=350]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (350 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        68  (0.0165773); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.16s 00:00:00.42 Elapsed: 00:00:00.38
# Mc/sec: 1215.69
//
Query:       MMETSP1137-20121227|5762_1  [L=198]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (198 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        64  (0.0156021); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.15s 00:00:00.34 Elapsed: 00:00:00.26
# Mc/sec: 1005.15
//
Query:       MMETSP1137-20121227|5763_1  [L=785]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
          0 1122.3   0.5          0 1122.0   0.3    1.0  1  TIGR00178 monomer_idh: isocitrate dehydrogenase, NADP-dependent


Domain annotation for each model (and alignments):
>> TIGR00178  monomer_idh: isocitrate dehydrogenase, NADP-dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ! 1122.0   0.3         0         0       6     740 ..      55     784 ..      52     785 .] 0.99

  Alignments for each domain:
  == domain 1    score: 1122.0 bits;  conditional E-value: 0
   TIGR00178   6 akiiytltdeapllatysllpivkafaasaGievetrdislagrilaefpeylteeqkvddalaelGelaktpeaniiklpnisasvpqlkaaikelqdkGydlpdypeepktdeekdikaryakikGsavnpvlreGnsdrraplavkeyarkhphkmGewsadskshvahmdagdfyaseksvlldaaeevkieliakdGketvlkaklklldgevidssvlskkalvefleeeiedakeegvllslhlkatmmkvsdpivfGhvvrvfykdvfakhaelleqlGldvenGladlyakieslpaakkeeieadlekvyeerpelamvdsdkGitnlhvpsdvivdasmpamirasGkmygkdgklkdtkavipdssyagvyqaviedckknGafdpttmGtvpnvGlmaqkaeeyGshdktfeieadGvvrvvd.ssGevlleeeveagdiwrmcqvkdapiqdwvklavtrarlsgtpavfwldperahdeelikkvekylkdhdteGldiqilspvkatrfslerirrGedtisvtGnvlrdyltdlfpilelGtsakmlsvvplmaGGGlfetGaGGsapkhvqqleeenhlrwdslGeflalaaslehvavktgnekakvladtldaatgklldeekspsrkvGeldnrgskfylakywaqelaaqtedkelaasfasvaealtkneekivaelaavqGeavdlgGyyapdtdlttkvlrpsatfnaile 740
                 +kiiyt tdeap+laty+llpiv+ f+a a i++et dis+a+r+l+ fpe++   ++  d la+lG+laktpeaniiklpn+sas  ql++aikelq kG+dlpd+p+ p t ee++i a+yak++GsavnpvlreGnsdrr  + vkeya k+ph+mG+ws ds++hvahm++gd+y+se+s ++ +a +v+iel  + G++ vlk++++l++gevidss++s + l++f+e e ++ak+eg++ slhlkatmmkvsdpi fGh+v+vf+ dv+   a++l ++ +  + Gl++ly  + s+ +a++  i a+le +y++ p+lamvdsdkGitnlhv sdvi+dasmp ++r+sGkm++k+g+l+d k +ipd++ya +y+a+i+dck nG+fd ttmG v nvGlmaqkaeeyGshdktfe++a+G+vrvvd +sG vl+++e eagd+wrmcq kdapi+dwv+lav+rar++g  + fwld++rahd+ +i+kv+ yl +hdt+Gldi i+ pv+a+  +++r r G+d++svtGnvlrdyltdlfpi+elGtsakmls+vpl+aGGGlfetGaGGsapkhvqq+++e+hlrwdslGe+lala sle+++ kt n+ka  l+ +l++a+gklld++kspsrkv +ldnrgs+fy+a ywa++laa+         fa++a+ l+ ne++iv+el + qG++v+lgGy++pd +l  k++rps t++++l+
  MMETSP1137-20121227|5763_1  55 SKIIYTKTDEAPALATYALLPIVQRFTAWASIAIETADISVASRVLSAFPERMKAAEHKVDTLAQLGDLAKTPEANIIKLPNVSASTTQLVSAIKELQGKGFDLPDFPATPSTPEEQEIYAKYAKVLGSAVNPVLREGNSDRRVAKPVKEYAMKNPHSMGKWSPDSRCHVAHMTDGDYYGSEQSHTMASAGSVRIELAMAGGDVKVLKPSVQLQAGEVIDSSMMSVRKLRAFYEREFSSAKAEGLMTSLHLKATMMKVSDPIFFGHAVSVFFSDVYNGLADKLAAAKISPNSGLGQLYDALPSMSSADQSAIXAALESSYAKMPKLAMVDSDKGITNLHVSSDVIIDASMPVVVRDSGKMWNKEGELEDVKCIIPDRCYATMYDAIIQDCKVNGQFDVTTMGNVANVGLMAQKAEEYGSHDKTFELPAAGTVRVVDnESGAVLMQHEAEAGDVWRMCQTKDAPIKDWVRLAVSRARATGAATTFWLDEKRAHDASIIAKVRAYLPEHDTSGLDISIMPPVEAITATCARARAGKDSVSVTGNVLRDYLTDLFPIIELGTSAKMLSIVPLLAGGGLFETGAGGSAPKHVQQFVKEGHLRWDSLGEYLALAVSLEDLGAKTSNAKASELGAALNEAIGKLLDNNKSPSRKVKQLDNRGSTFYIALYWAEALAAKE------PAFATLAKELQANESTIVQELIDCQGPPVELGGYWMPDPELCAKAMRPSPTLEKVLS 784
                 89***************************************************99988889**************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************9899****************************************************************************************************************************************************************************************************************************************84......68*************************************************999885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (785 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       121  (0.0294978); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.16s 00:00:00.66 Elapsed: 00:00:00.61
# Mc/sec: 1698.55
//
Query:       MMETSP1137-20121227|5764_1  [L=366]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (366 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        96  (0.0234032); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.18s 00:00:00.45 Elapsed: 00:00:00.40
# Mc/sec: 1207.70
//
Query:       MMETSP1137-20121227|5766_1  [L=400]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   2.8e-123  409.2   0.1   3.3e-123  408.9   0.1    1.1  1  TIGR01534 GAPDH-I: glyceraldehyde-3-phosphate dehydrogenase, type I
    2.4e-80  268.1   0.1    2.9e-80  267.8   0.0    1.0  1  TIGR01532 E4PD_g-proteo: erythrose-4-phosphate dehydrogenase
    6.3e-05   20.1   0.5      0.014   12.4   0.0    2.7  3  TIGR01296 asd_B: aspartate-semialdehyde dehydrogenase
    0.00094   16.1   0.9      0.024   11.6   0.4    2.6  2  TIGR00978 asd_EA: aspartate-semialdehyde dehydrogenase


Domain annotation for each model (and alignments):
>> TIGR01534  GAPDH-I: glyceraldehyde-3-phosphate dehydrogenase, type I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  408.9   0.1  3.2e-126  3.3e-123       1     330 []      44     369 ..      44     369 .. 0.97

  Alignments for each domain:
  == domain 1    score: 408.9 bits;  conditional E-value: 3.2e-126
   TIGR01534   1 kvginGfGRiGrlvlrallekkskdlevvaindltdleklayllkyDsvhGrfeeevtvsekkallvngkkvivlaserdpkdlpwkelgvdlvlectGafldkekalekhleagakkVllsaPskdeaaitlVygvNeeeldeseekiiSaASCTTnclapllkvleeefgiksglmtTvHayTadQkllDavh.akdlrraRaaaeniiptstgaakavakvlpelagkltgeavRvPtpdvSlvdlvlnlekevtkeevnaalkeaseg.lkgvlgysedelVSsDiigspkssivdakatkvtelkeklvkvvaWYDNElgysnrlvd 330
                 +vg+nGfGRiGr v+r+l   ++ ++++ +in + + ++++yll +D+vhGrf ++++++++ al++ng  +i+++ +r+p+++pw+++gvd+v e+tG fl++e+ + +h+eagakkV++saP+kd +++t+V+gvN++++d ++ +++S+ASCTTn lapl+k ++e++gik+g+mtTvHa+Ta+Q+++D++  akd+r +Raa+ niip++tgaakavak  p ++gkltg avRvP+ dvS++dl+++le+e+t+ee+++ +k as++  kg++gy+ed +VSsD++g++ s+++da+a  +  l+ +++k+vaWYDNE+gys+rlvd
  MMETSP1137-20121227|5766_1  44 RVGVNGFGRIGRQVVRILSMGRHPEMQLRHINSTSSPKYMQYLLLHDTVHGRFGGTCEYDDD-ALIING-MRISVSLTRNPAEIPWAASGVDYVCESTGGFLSTED-CAGHFEAGAKKVVISAPAKD-DTPTIVVGVNDQDYDYETMHVVSCASCTTNGLAPLVKLIHEKWGIKHGMMTTVHAATASQSTVDGAVkAKDWRAGRAASANIIPATTGAAKAVAKCYPPMKGKLTGIAVRVPVVDVSMIDLTVQLERETTYEEIKDEVKLASKTyAKGIVGYTEDMVVSSDFVGETLSTVFDASAGVM--LNPTFCKLVAWYDNEWGYSSRLVD 369
                 69*******************99**************************************9.7****9.6999999*************************6665.8******************8.599*************************************************************99978***********************************************************************************************************99..5568******************97 PP

>> TIGR01532  E4PD_g-proteo: erythrose-4-phosphate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  267.8   0.0   2.8e-83   2.9e-80       1     325 []      44     369 ..      44     369 .. 0.97

  Alignments for each domain:
  == domain 1    score: 267.8 bits;  conditional E-value: 2.8e-83
   TIGR01532   1 rvaingfgrigrnvlralyesgkraeievvalneladaaavayllkydtshgrfakevkvdrdqlyvnddairvlreselealdwrelgvdlvldctgvygsredgerfiaagakkvlfshpgaadldativygvnqedlsaee.kivsnascttncivplikllddaigiesgtittihsamndqqvidayhn..dlrrtraasqsiipvdtklakgierllpkladrleaiavrvptvnvtaldlsvtvkkdvkanevnrvlreaaesalrgivdytelplvsvdfnhdphsaivdgtqtrvsgarlvkllvwcdnewgfanrmld 325
                 rv +ngfgrigr v+r l   g++ e+++  +n  + ++ ++yll +dt hgrf++  + d+d l +n+  i v  ++++  ++w + gvd v + tg + s ed+  +++agakkv++s p+  d   tiv gvn++d   e  ++vs ascttn   pl+kl+++ +gi++g +tt+h+a   q  +d   +  d r  raas  iip  t+ ak + + +p ++++l  iavrvp v+v+ +dl+v++++++  +e+   ++ a+++  +giv yte   vs df  +  s++ d +   + ++ + kl++w+dnewg++ r++d
  MMETSP1137-20121227|5766_1  44 RVGVNGFGRIGRQVVRIL-SMGRHPEMQLRHINSTSSPKYMQYLLLHDTVHGRFGGTCEYDDDALIINGMRISVSLTRNPAEIPWAASGVDYVCESTGGFLSTEDCAGHFEAGAKKVVISAPAKDD-TPTIVVGVNDQDYDYETmHVVSCASCTTNGLAPLVKLIHEKWGIKHGMMTTVHAATASQSTVDGAVKakDWRAGRAASANIIPATTGAAKAVAKCYPPMKGKLTGIAVRVPVVDVSMIDLTVQLERETTYEEIKDEVKLASKTYAKGIVGYTEDMVVSSDFVGETLSTVFDASAGVMLNPTFCKLVAWYDNEWGYSSRLVD 369
                 899*************87.589****************************************************************************************************8777.579********998775279******************************************9654446*********************************************************************************************************************************987 PP

>> TIGR01296  asd_B: aspartate-semialdehyde dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0       0.2   2.1e+02       8      37 ..      50      79 ..      44      82 .. 0.85
   2 !   12.4   0.0   1.4e-05     0.014      97     157 ..     165     224 ..     124     261 .. 0.76
   3 !    5.0   0.1    0.0024       2.5     234     271 ..     271     308 ..     260     316 .. 0.89

  Alignments for each domain:
  == domain 1    score: -1.4 bits;  conditional E-value: 0.2
   TIGR01296  8 tGavGqellkvLeernfpidklvllasers 37
                 G++G++++++L     p  +l+ + s+ s
  MMETSP1137-20121227|5766_1 50 FGRIGRQVVRILSMGRHPEMQLRHINSTSS 79
                599**********99999999999999877 PP

  == domain 2    score: 12.4 bits;  conditional E-value: 1.4e-05
   TIGR01296  97 ldedvPLvvpevnaeelkeakkkgiianPnCstiqlvvvLkplkdeaklkrvvvstYqavs 157
                 + +d+P +v  vn ++  + ++  +++   C+t  l +++k ++++ ++k+ ++ t  a  
  MMETSP1137-20121227|5766_1 165 AKDDTPTIVVGVNDQDY-DYETMHVVSCASCTTNGLAPLVKLIHEKWGIKHGMMTTVHAAT 224
                 4679*********9876.66679****************************9999988764 PP

  == domain 3    score: 5.0 bits;  conditional E-value: 0.0024
   TIGR01296 234 vsatcvrvPvftghsesvsiefekelsveevkelLkea 271
                 +++ +vrvPv+    + +++++e+e + ee+k+ +k a
  MMETSP1137-20121227|5766_1 271 LTGIAVRVPVVDVSMIDLTVQLERETTYEEIKDEVKLA 308
                 67789**************************9877655 PP

>> TIGR00978  asd_EA: aspartate-semialdehyde dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.0     0.038        39       1      36 [.      43      79 ..      43     105 .. 0.81
   2 !   11.6   0.4   2.3e-05     0.024     140     266 ..     187     310 ..     167     327 .. 0.76

  Alignments for each domain:
  == domain 1    score: 1.0 bits;  conditional E-value: 0.038
   TIGR00978  1 vkvavLGatGlvGqklvklle..khpyfelakvvaser 36
                ++v+v G  G +G+++v++l   +hp+++l ++ + ++
  MMETSP1137-20121227|5766_1 43 IRVGVNG-FGRIGRQVVRILSmgRHPEMQLRHINSTSS 79
                5777777.499********97447******99987655 PP

  == domain 2    score: 11.6 bits;  conditional E-value: 2.3e-05
   TIGR00978 140 vivtnpnCstailtlalkPlidaasikkvivatlqav..sGAGypG.v......ssldildnviPyikgEEekiekEtkkilGkleegkvepaelevsatttRvPvleGHtesvfveldkkldieeirealkefkk 266
                  +v  + C+t +l+  +k + ++ +ik+ +++t+ a+  s    +G v      +  +  +n+iP  +g  + ++k    + Gkl++            ++ RvPv++  +  + v+l+++   eei++++k  +k
  MMETSP1137-20121227|5766_1 187 HVVSCASCTTNGLAPLVKLIHEKWGIKHGMMTTVHAAtaSQSTVDGaVkakdwrAGRAASANIIPATTGAAKAVAKCYPPMKGKLTG------------IAVRVPVVDVSMIDLTVQLERETTYEEIKDEVKLASK 310
                 478889999999999999999999999999999988522444555522111111345678899999999888877777777777766............788**************************99886655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (400 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       164  (0.0399805); expected 82.0 (0.02)
Passed bias filter:                      113  (0.0275475); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.36u 0.12s 00:00:00.48 Elapsed: 00:00:00.48
# Mc/sec: 1099.91
//
Query:       MMETSP1137-20121227|5767_1  [L=257]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (257 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        87  (0.0212092); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.17s 00:00:00.39 Elapsed: 00:00:00.31
# Mc/sec: 1094.23
//
Query:       MMETSP1137-20121227|5768_1  [L=264]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.8e-45  150.2   0.0    1.3e-44  149.8   0.0    1.1  1  TIGR00636 PduO_Nterm: ATP:cob(I)alamin adenosyltransferase


Domain annotation for each model (and alignments):
>> TIGR00636  PduO_Nterm: ATP:cob(I)alamin adenosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  149.8   0.0   3.1e-48   1.3e-44       1     170 [.      64     247 ..      64     248 .. 0.92

  Alignments for each domain:
  == domain 1    score: 149.8 bits;  conditional E-value: 3.1e-48
   TIGR00636   1 ytktGDkGktklaggsrvsKdserveayGtvDElnsflGvalskl.....keeelkeelekiqndlfdlgadlatksekk........kit.eekvkfleeridkyreeleelkkFvlPGGtkaaaalhvaRtvaRRaERevvkllkeeeinekvlvylNRlSdllfvlArvvnkrkgkeevlw 170
                 yt+tGD G+ +l++g+r  Kd+ + +a+G+ DEln+++G++++          +l+ +l ++q  l d+g+ +at+ +++         ++ + + + le +id++ +el++lk+F+lP G + a++lh+aR+v+RRaER+vv l+ + e +++v vy+NRlSd+lfv+Ar++ +r+g++ev +
  MMETSP1137-20121227|5768_1  64 YTRTGDGGSSSLFSGERRRKDDAVFAALGHTDELNAAIGLVRAVCaeagsPLGQLHMQLGEVQSRLIDVGSAIATPPSTSqtarvartAFDgDGEAALLEGWIDAMDAELPQLKTFILPAGGQLASTLHLARAVCRRAERAVVPLVLAGECEKSVEVYVNRLSDYLFVAARFASHRTGETEVPY 247
                 8*****************************************977666655679*********************98777788666553332457889********************************************************************************999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (264 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       100  (0.0243784); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.24u 0.13s 00:00:00.37 Elapsed: 00:00:00.37
# Mc/sec: 941.76
//
Query:       MMETSP1137-20121227|5769_1  [L=595]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     2e-119  396.6   0.0     3e-119  396.1   0.0    1.2  1  TIGR01850 argC: N-acetyl-gamma-glutamyl-phosphate reductase
    6.5e-26   89.2   0.0    2.8e-25   87.1   0.0    2.0  1  TIGR01851 argC_other: N-acetyl-gamma-glutamyl-phosphate reductase
    1.5e-12   45.1   0.0    4.2e-12   43.6   0.0    1.8  1  TIGR00978 asd_EA: aspartate-semialdehyde dehydrogenase
      3e-06   24.4   0.0     0.0074   13.3   0.0    3.0  2  TIGR01296 asd_B: aspartate-semialdehyde dehydrogenase


Domain annotation for each model (and alignments):
>> TIGR01850  argC: N-acetyl-gamma-glutamyl-phosphate reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  396.1   0.0    3e-122    3e-119       2     334 ..      93     423 ..      92     426 .. 0.96

  Alignments for each domain:
  == domain 1    score: 396.1 bits;  conditional E-value: 3e-122
   TIGR01850   2 kvaivGasGYtGaeLlrllakHpevevtklvssreagkklsevhphlkglvdlkleeleeeeileeadvvflAlphgvsaelvpellekgvkvidlSadfRlkdaevYekwYgkkhekeelleeavYGlpElnreeikkaklianPGCyaTaalLalaPllkekliepksiivdaksGvSgAGrkasekslfaevnenlkpYkvtkHrHtpEieqelsklaekkvkvsftphlvpmtrGilatiyaklkkelteeelrklyeevYedepfvrvlkegelPstkavlgsnfvdigvavdeetkrvvvvsaiDNLvKGaagqAvqnlNlmlgfde 334
                 +++i+GasGYtGaeL rll +Hp++++++++s+r ag+++s+v+p++    +l + ++ ee   +++d+ f++lph +++++v  +  ++++++dlSadfRl+d ++Ye+wYg+ h ++el+  avYGl+El+r+e+++a+l+anPGCy+Taa+Lal Pll++k+i  ++ii+daksG+SgAGr+++e++lf+ev++ +++Y+v  HrH+pEieq l +++++ v+++ftphl+pm+rGi+ +iy+kl+++ t ++l+++++e Y+depfv+vl+ g++P+t++v+gsn++ i+v+ d+  +r++v+s+iDNL KGa+gqA+qn+N+ml+ ++
  MMETSP1137-20121227|5769_1  93 RICILGASGYTGAELSRLLLRHPHAKIVSMTSERYAGSPMSKVFPQFACASSLPVMTKLEEVDWSAIDMAFCCLPHATTQQVVLGI-PEDIRIVDLSADFRLSDVATYEEWYGT-HYAPELQPGAVYGLTELYRDEVRGARLVANPGCYPTAAQLALDPLLRAKAILADDIIIDAKSGTSGAGRAPKEATLFCEVADGIHAYAVGAHRHAPEIEQGLARASGSPVTINFTPHLMPMSRGIFESIYVKLAEGQTPADLEAILREKYADEPFVTVLSDGSVPQTRHVRGSNHCIISVKGDRLPGRAIVMSVIDNLFKGASGQAIQNMNVMLDTQK 423
                 799*************************9999999*************99997777666666678******************765.678***********************9.77789*****************************************************************************************************99*********************************************************************************************************99765 PP

>> TIGR01851  argC_other: N-acetyl-gamma-glutamyl-phosphate reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.1   0.0   2.8e-28   2.8e-25      49     308 ..     158     419 ..     155     421 .. 0.80

  Alignments for each domain:
  == domain 1    score: 87.1 bits;  conditional E-value: 2.8e-28
   TIGR01851  49 aadvailclpddaareavslvdnpntkildastayrtae.....dwvyG...fpelaaeq........rekianakrvanPGcyatgaiallrPlveaGilPadfPvtinavsGysGGGkaliakyeeesaddskkaafiiyglalehkhlpemrkh.sglaskPi...ftPavGdfaqGllveiplhlaeldskvsaedihkalaeyykGekfvkvaelddaellddtildaqglngtnrlelfvfgsddgerallvarldnlGkGasGaavqnlnial 308
                 a+d+a+ clp  +++  v l    + +i+d s+ +r ++     +w yG    pel+++         r+ ++ a+ vanPGcy+t+a + l Pl+ a  + ad  + i a sG sG G+a  ++        +      +y++   h+h pe+++  ++    P+   ftP +    +G+   i ++lae +   +++d++++l e y+ e fv v +   ++        ++ + g+n+  + v g    +ra++++ +dnl kGasG a+qn+n++l
  MMETSP1137-20121227|5769_1 158 AIDMAFCCLPHATTQ-QVVLGIPEDIRIVDLSADFRLSDvatyeEW-YGthyAPELQPGAvygltelyRDEVRGARLVANPGCYPTAAQLALDPLLRAKAILAD-DIIIDAKSGTSGAGRAPKEATL----FCEVADGIHAYAVG-AHRHAPEIEQGlARASGSPVtinFTPHLMPMSRGIFESIYVKLAEGQ---TPADLEAILREKYADEPFVTVLSDGSVP-------QTRHVRGSNHCIISVKGDRLPGRAIVMSVIDNLFKGASGQAIQNMNVML 419
                 79********86655.567888899***********8752222256.442325899987433444444999************************987766666.4778999********9766655....22233446677765.7******98741333445665569**************998877765...899******************8766666.......678999******************************************9 PP

>> TIGR00978  asd_EA: aspartate-semialdehyde dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.6   0.0   4.1e-15   4.2e-12       1     340 [.      92     418 ..      92     420 .. 0.79

  Alignments for each domain:
  == domain 1    score: 43.6 bits;  conditional E-value: 4.1e-15
   TIGR00978   1 vkvavLGatGlvGqklvkllekhpyfelakvvaserkaGkkygevvkwilsgdipeevrdleiketepaaeekdvdlvfsalpsevaeevEkklaeeGlevfsnasalRldpdvpl.......ivpEvnsdhlellkvqkergwkGv.ivtnpnCstailtlalkPlidaasi..kkvivatlqavsGAGyp...GvssldildnviPyikgEEekiekEtkkilGkleegkvepaelevsatttRvPvleGHtesvfveldkkldieeirealkefkklpqklglpsaPekpivlldeedrPqprldldaekgmavtvGrlreeseslklvvlghnlvRGAAGaallnaEll 340
                 +++ +LGa+G  G +l++ll +hp+ +++++ +ser aG   ++v          + +  l++++  +++    +d++f  lp+ ++++v   + e+ + ++  +  +Rl +             pE+ +  +  l++  + + +G  +v+np C  ++  lal+Pl++a +i  + +i+ +    sGAG+       + ++ d +  y  g  +  + E  + l + ++      ++ +  t + +P+  G  es++v+l++   + ++ + l+e+             e  +++l +   Pq+r  +   +   ++v   r   + + + v ++nl +GA G a+ n++++
  MMETSP1137-20121227|5769_1  92 LRICILGASGYTGAELSRLLLRHPHAKIVSM-TSERYAGSPMSKVFP------QFACASSLPVMTKLEEVDWSAIDMAFCCLPHATTQQVVLGIPED-IRIVDLSADFRLSDVATYeewygthYAPELQPGAVYGLTELYRDEVRGArLVANPGCYPTAAQLALDPLLRAKAIlaDDIIIDAKSGTSGAGRApkeATLFCEVADGIHAYAVGAHRH-APEIEQGLARASG-----SPVTINFTPHLMPMSRGIFESIYVKLAEGQTPADLEAILREKYAD----------EPFVTVLSDGSVPQTRHVRG-SNHCIISVKGDRLPGRAIVMSV-IDNLFKGASGQAIQNMNVM 418
                 699*************************996.69***********95......3345556666665555565689*****************99999.************865543222222268******999888877678888549******************9987754489*************96221455678999999999987655.4455555555555.....67778889999*****************99999999888775544..........44567788888****98777.4445555555555666676765.69**************998 PP

>> TIGR01296  asd_B: aspartate-semialdehyde dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   0.0   7.2e-06    0.0074       1     163 [.      93     276 ..      93     323 .. 0.70
   2 !    6.1   0.0    0.0011       1.1     237     332 ..     320     414 ..     312     420 .. 0.81

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 7.2e-06
   TIGR01296   1 nvaivGatGavGqellkvLeernfpidklvllasersaGkkvk.....f.kgkelev.eeaekesfegidialfsaGgsvskefapkaakagviviDntsafrldedv.......PLvvpevn........aeelkeakkkgiianPnCstiqlvvvLkplkdeakl..krvvvstYqavsGaGkkg 163
                 ++ i+Ga+G  G el ++L     p  k+v ++ser aG  +      f     l v +++e+ + + id+a+ +   ++ ++++  + ++ + ++D ++ frl +             pe+         +    e +   ++anP C   ++  +L+pl ++  +    +++ +    sGaG++ 
  MMETSP1137-20121227|5769_1  93 RICILGASGYTGAELSRLLL--RHPHAKIVSMTSERYAGSPMSkvfpqFaCASSLPVmTKLEEVDWSAIDMAFCCLPHATTQQVVLGIPED-IRIVDLSADFRLSDVAtyeewygTHYAPELQpgavygltELYRDEVRGARLVANPGCYPTAAQLALDPLLRAKAIlaDDIIIDAKSGTSGAGRAP 276
                 589************99996..46999************87642212121234455515667779999*********99999999888877.9999*******8653312222222234555411111100333456666779****************99765554236899999999****9864 PP

  == domain 2    score: 6.1 bits;  conditional E-value: 0.0011
   TIGR01296 237 tcvrvPvftghsesvsiefekelsveevkelLke....apgvvviddpsenlyptPleavgkdevfvgrirkDlskekglalfvvaDnlrkGaalnavqi 332
                 t   +P+ +g  es+++++++  ++ +++ +L+e     p v+v++d      p   ++ g+++  ++ ++ D+  ++++ + v  Dnl kGa+  a+q 
  MMETSP1137-20121227|5769_1 320 TPHLMPMSRGIFESIYVKLAEGQTPADLEAILREkyadEPFVTVLSDG---SVPQTRHVRGSNHCIIS-VKGDRLPGRAIVMSV-IDNLFKGASGQAIQN 414
                 55568999999****************999997632113567777777...678899999*9999887.99********98865.6********999985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (595 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        92  (0.0224281); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.48u 0.16s 00:00:00.64 Elapsed: 00:00:00.49
# Mc/sec: 1602.72
//
Query:       MMETSP1137-20121227|5770_1  [L=530]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (530 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       294  (0.0716724); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.14s 00:00:00.51 Elapsed: 00:00:00.52
# Mc/sec: 1345.27
//
Query:       MMETSP1137-20121227|5771_1  [L=175]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (175 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        44  (0.0107265); expected 82.0 (0.02)
Passed bias filter:                       42  (0.0102389); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.13s 00:00:00.29 Elapsed: 00:00:00.47
# Mc/sec: 491.45
//
Query:       MMETSP1137-20121227|5772_1  [L=35]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (35 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        36  (0.00877621); expected 82.0 (0.02)
Passed bias filter:                       35  (0.00853242); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.12s 00:00:00.23 Elapsed: 00:00:00.43
# Mc/sec: 107.43
//
Query:       MMETSP1137-20121227|5773_1  [L=964]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (964 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       108  (0.0263286); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.58u 0.14s 00:00:00.72 Elapsed: 00:00:00.73
# Mc/sec: 1742.98
//
Query:       MMETSP1137-20121227|5774_1  [L=674]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (674 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       224  (0.0546075); expected 82.0 (0.02)
Passed bias filter:                       96  (0.0234032); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.16s 00:00:00.62 Elapsed: 00:00:00.43
# Mc/sec: 2068.85
//
Query:       MMETSP1137-20121227|5776_1  [L=339]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (339 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        58  (0.0141394); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.13s 00:00:00.38 Elapsed: 00:00:00.36
# Mc/sec: 1242.90
//
Query:       MMETSP1137-20121227|5777_1  [L=407]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.019   12.3   0.0      0.034   11.4   0.0    1.3  1  TIGR03695 menH_SHCHC: 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase


Domain annotation for each model (and alignments):
>> TIGR03695  menH_SHCHC: 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   8.3e-06     0.034      53     100 ..     167     213 ..     161     220 .. 0.80

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 8.3e-06
   TIGR03695  53 feeaaqellkelleklkiekviLvGYSlGGRialalaleaperlegli 100
                 +++ ++  +  ++++ + +++iLvG S G  ia+++ ++ap+ l++ i
  MMETSP1137-20121227|5777_1 167 VKQLCEL-VGYMQKEKGMHEFILVGHSTGCQIAVHFLARAPSALRRTI 213
                 5666666.5556666699***********************9877654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (407 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        73  (0.0177962); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.27u 0.20s 00:00:00.47 Elapsed: 00:00:00.36
# Mc/sec: 1492.21
//
Query:       MMETSP1137-20121227|5778_1  [L=470]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.4e-54  181.6   0.1    4.6e-54  181.2   0.0    1.2  1  TIGR03592 yidC_oxa1_cterm: membrane protein insertase, YidC/Oxa1 family


Domain annotation for each model (and alignments):
>> TIGR03592  yidC_oxa1_cterm: membrane protein insertase, YidC/Oxa1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  181.2   0.0   1.1e-57   4.6e-54       1     190 [.     132     342 ..     132     343 .. 0.91

  Alignments for each domain:
  == domain 1    score: 181.2 bits;  conditional E-value: 1.1e-57
   TIGR03592   1 syglaIilltlvirllllplsakqiksmrkmqelqpklkeiqekyk.edrqklqqemmklykeegvnplaGcLPlLiQmPillaLyavllrsielr..kapflwiedlsspdptveatialla................iyilpvlaglttflqqklsapkpadpa..qqkimlyimpvmflfmflffpaglllYwvvsnlftilqqliin 190
                 syg aIil+t+ +++l++pl+ +qi+s++kmq+++p  k++qeky+  d+++l+qe++kly e+ vnplaGcLP L Q+P++++Ly+ ll+  +     +pflw+ +l+ p +  +  i  l+                + +lp+l+++++++++ l +pk+ dpa  q +++l+++p+m+ +++l++p+gl lYw+++n++t++ +l+i+
  MMETSP1137-20121227|5778_1 132 SYGPAIILFTIGVKALTFPLTKQQIESTTKMQAIAPAAKALQEKYRdRDPARLNQELQKLYTENSVNPLAGCLPALAQIPLFIGLYRSLLNLAKADalAEPFLWLPSLEGPVADYQEGIGWLTewvngapkfgwsdtiaYLVLPILLVISQYASTALLTPKTDDPAqqQSQAILKFLPLMIGWFSLNVPSGLGLYWLTNNFLTTASTLWIR 342
                 6999******************************************889****************************************6665542239****999999999988888888779999999998888876669***************9888877665588999**********************************9997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (470 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       119  (0.0290102); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.14s 00:00:00.48 Elapsed: 00:00:00.47
# Mc/sec: 1319.89
//
Query:       MMETSP1137-20121227|5779_1  [L=210]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (210 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        76  (0.0185275); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.18s 00:00:00.36 Elapsed: 00:00:00.33
# Mc/sec: 839.93
//
Query:       MMETSP1137-20121227|5780_1  [L=80]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (80 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        74  (0.01804); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.15s 00:00:00.30 Elapsed: 00:00:00.50
# Mc/sec: 211.18
//
Query:       MMETSP1137-20121227|5781_1  [L=332]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (332 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       116  (0.0282789); expected 82.0 (0.02)
Passed bias filter:                      100  (0.0243784); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.16s 00:00:00.43 Elapsed: 00:00:00.66
# Mc/sec: 663.95
//
Query:       MMETSP1137-20121227|5782_1  [L=543]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     1e-218  724.5   2.8   1.2e-218  724.3   1.9    1.0  1  TIGR01780 SSADH: succinate-semialdehyde dehydrogenase
   8.8e-124  411.3   1.8     1e-123  411.1   1.2    1.0  1  TIGR01804 BADH: betaine aldehyde dehydrogenase
   9.6e-120  398.2   2.4   1.2e-119  397.9   1.7    1.0  1  TIGR02299 HpaE: 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase
   1.4e-102  341.6   5.0   1.8e-102  341.3   3.5    1.0  1  TIGR03216 OH_muco_semi_DH: 2-hydroxymuconic semialdehyde dehydrogenase
    2.1e-99  331.3   3.7    2.6e-99  331.0   2.6    1.0  1  TIGR03374 ABALDH: 1-pyrroline dehydrogenase
    1.2e-88  295.6   0.0    1.6e-88  295.2   0.0    1.0  1  TIGR03250 PhnAcAld_DH: putative phosphonoacetaldehyde dehydrogenase
    6.3e-82  273.8   2.7      8e-82  273.4   1.9    1.0  1  TIGR01237 D1pyr5carbox2: putative delta-1-pyrroline-5-carboxylate dehydrogenase
    5.7e-79  263.8   2.5    6.8e-79  263.6   1.8    1.0  1  TIGR01722 MMSDH: methylmalonate-semialdehyde dehydrogenase (acylating)
    1.1e-74  249.8   3.6    1.3e-74  249.5   2.5    1.0  1  TIGR03240 arg_catab_astD: succinylglutamic semialdehyde dehydrogenase
    1.6e-60  202.9   0.8    1.9e-60  202.6   0.6    1.0  1  TIGR01238 D1pyr5carbox3: delta-1-pyrroline-5-carboxylate dehydrogenase
    3.8e-54  182.0   0.2    4.8e-54  181.7   0.1    1.0  1  TIGR01236 D1pyr5carbox1: 1-pyrroline-5-carboxylate dehydrogenase
    3.3e-30  102.7   1.5    4.8e-30  102.2   1.0    1.1  1  TIGR02278 PaaN-DH: phenylacetic acid degradation protein paaN
    5.7e-10   36.4   0.5    8.3e-10   35.9   0.3    1.1  1  TIGR02518 EutH_ACDH: acetaldehyde dehydrogenase (acetylating)
    4.3e-09   32.9   6.7    4.1e-08   29.7   4.7    2.0  1  TIGR02288 PaaN_2: phenylacetic acid degradation protein paaN


Domain annotation for each model (and alignments):
>> TIGR01780  SSADH: succinate-semialdehyde dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  724.3   1.9  4.2e-221  1.2e-218       1     448 []      87     536 ..      87     536 .. 0.99

  Alignments for each domain:
  == domain 1    score: 724.3 bits;  conditional E-value: 4.2e-221
   TIGR01780   1 vvnPatGekigkvpevsveeveeaieaaeealktykeltakerakllrkwyelilenkddlaklltlenGkplkeakgevlyaasyleWfaeeakrvyGdviaslqsdkrllvikqPvGvaaiitPWnfPaamitrkagaalaaGctvvvkPaeqtPlsalalarlaekaGvPkgvlnvvtss...aeevGkvltssPlvrkvsftGstavGkillkqsastvkkvslelGGnaPlivfddadldqavegalaskfrnagqtcvcanrlyvhesvydefakklaekvkklkvGdGldegvtvGplinekavekvekhiedavekGakvvvgGdkreekggnffePtvlsdvtadmlvakeetfGPlapvfkfddeeevvalandtevGlaayffskdlakiirvaeelevGlvgvntglisevvipfGGvkesGlGregskyGieeylevk 448
                 v++PatG+ +g vp++++e+ ++ai aae+al++++++ ak+r+ llrkwy+l+l+n++dla ++  e+Gkpl+ea ge++yaas++eWfaeeakr+yGdvi+s++sd+r+lv kqPvGv+a+itPWnfP+amitrka+aalaaGct+vvkP+e tP+salal  lae+aG+P gvlnvvt+    a evG ++ts+P+v+k+sftGstavGk l++q a t+kk+slelGGnaP+ivf+dad+d av+ga+a+k+rnagqtcvc+nr+yvh++v+def+ kl+++v  lkvG G +egv++Gpli+e av+kve+h++dav+kGa++++gG  r++ gg+ff+Pt+++ +t++m+v++eetfGPlap+++f++eeev++ a dt++Glaayf+s+dla+++rv+e+le+G+vgvntg+is++v+pfGG+kesG GregskyGi+ey++vk
  MMETSP1137-20121227|5782_1  87 VTDPATGALLGVVPDMGAEDCRDAIAAAEKALPAWRQMPAKQRSGLLRKWYDLVLANQKDLAYIMMSEQGKPLAEAMGEISYAASFIEWFAEEAKRTYGDVIPSTSSDRRMLVFKQPVGVCAAITPWNFPSAMITRKAAAALAAGCTMVVKPSEMTPFSALALMALAEEAGIPPGVLNVVTCGsanAAEVGSEMTSNPVVKKISFTGSTAVGKKLMAQGAGTLKKMSLELGGNAPFIVFEDADVDAAVAGAIAAKYRNAGQTCVCTNRFYVHSKVHDEFVMKLVSAVTDLKVGRGTEEGVAQGPLISEAAVRKVEEHVADAVAKGAEILAGG-SRHKLGGTFFQPTIIAGATKHMKVTEEETFGPLAPIYRFENEEEVLHAASDTPFGLAAYFYSRDLARVWRVSEALEYGMVGVNTGVISSEVAPFGGMKESGHGREGSKYGIDEYMNVK 536
                 89***********************************************************************************************************************************************************************************9777799************************************************************************************************************************************************.99*****************************************************************************************************************998 PP

>> TIGR01804  BADH: betaine aldehyde dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  411.1   1.2  3.4e-126    1e-123       2     467 .]      72     536 ..      71     536 .. 0.98

  Alignments for each domain:
  == domain 1    score: 411.1 bits;  conditional E-value: 3.4e-126
   TIGR01804   2 idGeyveaeagkvleiinPanqeviaevaeatredvekaiaaarraqgewaalsalergrilrriaellrkkneelakletldtGkaleetlvadiddiadvleffaGladkleGeiielgip.sfakvrreplGvvvgigawnyPlliaswksaPalaaGnalvlkPseitPltalkvaelleeaGlPkGvfnvvl.G..kgaevGeelvehkdvakvsltGgvetGkkimaaaaeelkkvtlelGGksPlivfddadlelavdqallanffsaGqvcsnGtrvlvekkikekflaklvervkkiklGdgfdeetelGPlisaehrdkvlkyiekgkeegaklaiGGkvpeeeeldeGffiePtvfadvtddmtivreeifGPvlsvlefeseeevikrandteyGlaagvftadleraervaerlkaGtvwindynlspaevPfGGykqsGiGrengvaaleeytevk 467
                 i+G+++e +a++ +e+  Pa++  +  v + ++ed   aiaaa++a + w ++ a +r+  lr+  +l+  ++++la +   + Gk+l e+ + +i+ +a  +e+fa  a++  G++i+++ +     v ++p+Gv++ i++wn+P  + + k+a alaaG+++v+kPse+tP++al+++ l eeaG+P Gv+nvv+ G  + aevG+e+++++ v+k+s+tG+ + Gkk+ma+ a  lkk++lelGG +P ivf+dad++ av +a+ a++ +aGq c    r +v++k++++f+ klv  v  +k+G g +e    GPlis +   kv+++++ + + ga+++ GG + +      G+f++Pt++a  t++m++ +ee fGP+  +  fe+eeev++ a dt +Glaa  +++dl r  rv e l+ G+v +n+   s   +PfGG k+sG Gre ++ +++ey +vk
  MMETSP1137-20121227|5782_1  72 IGGQWTEGHAERHVEVTDPATGALLGVVPDMGAEDCRDAIAAAEKALPAWRQMPAKQRSGLLRKWYDLVLANQKDLAYIMMSEQGKPLAEA-MGEISYAASFIEWFAEEAKRTYGDVIPSTSSdRRMLVFKQPVGVCAAITPWNFPSAMITRKAAAALAAGCTMVVKPSEMTPFSALALMALAEEAGIPPGVLNVVTcGsaNAAEVGSEMTSNPVVKKISFTGSTAVGKKLMAQGAGTLKKMSLELGGNAPFIVFEDADVDAAVAGAIAAKYRNAGQTCVCTNRFYVHSKVHDEFVMKLVSAVTDLKVGRGTEEGVAQGPLISEAAVRKVEEHVADAVAKGAEILAGGSRHKLG----GTFFQPTIIAGATKHMKVTEEETFGPLAPIYRFENEEEVLHAASDTPFGLAAYFYSRDLARVWRVSEALEYGMVGVNTGVISSEVAPFGGMKESGHGREGSKYGIDEYMNVK 536
                 89*****************************************************************************************.99***************************996678899******************************************************************733225689***********************************************************************************************************************************************998764....7*******************************************************************************99999************************998 PP

>> TIGR02299  HpaE: 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  397.9   1.7  4.1e-122  1.2e-119       4     475 ..      71     539 ..      68     542 .. 0.96

  Alignments for each domain:
  == domain 1    score: 397.9 bits;  conditional E-value: 4.1e-122
   TIGR02299   4 lidGelvasesgetfetlsPadnevlasvakGgaedvdkavkaakkafkkwaelkaaerkklllkladliekhadeiavlesldtGqalrlvrkavaraaenfrffadkaeeakdgetlpvd..eflnytvrvpvGvvglitPwnaPfmlstwkiaPalaaGntvvlkpaelsPltaarlaelvkeaglPdGvlnlvh.G..fGeeaGkalvehpavkavsfvGetatGsaimrngadtlkrlslelGGksPvivfddadleraldavvfmifslnGerctassrllvqesiaedfveklkervkairvGdPldeetevGPlikeehlakvlsylevaekeGatilvGgkkakevldkelsrGnyvaPtvlvdadnkmriaqeeifGPvltvipfkdeeealelandieyGlagyvwtedvgralrvaaaleaGmiyvnsenvrdlrtPfGGvkasGigreGGdysfdfytetknva 475
                  i G++++++     e  +Pa+ + l++v   gaed   a++aa+ka+++w++++a++r  ll+k  dl+ ++ +++a +   + G++l+    +++ aa   ++fa++a+ +++g ++p+   +      ++pvGv++ itPwn P  + t k a alaaG+t+v kp+e++P++a  l  l++eag+P+Gvln+v  G     e G+ ++  p vk +sf+G+ta G+++m++ga tlk++slelGG +P+ivf+dad++ a+  ++   + + G+ c ++ r++v+ +++++fv kl+  v  ++vG   +e+   GPli+e+ + kv +++  a  +Ga+il+Gg ++k         G + +Pt++++a ++m++++ee fGP++ +  f++eee+l+ a d+ +Gla+y +++d+ r  rv++ale Gm+ vn+  +    +PfGG+k+sG greG +y  d y++ k va
  MMETSP1137-20121227|5782_1  71 CIGGQWTEGHAERHVEVTDPATGALLGVVPDMGAEDCRDAIAAAEKALPAWRQMPAKQRSGLLRKWYDLVLANQKDLAYIMMSEQGKPLAEAMGEISYAASFIEWFAEEAK-RTYGDVIPSTssDRRMLVFKQPVGVCAAITPWNFPSAMITRKAAAALAAGCTMVVKPSEMTPFSALALMALAEEAGIPPGVLNVVTcGsaNAAEVGSEMTSNPVVKKISFTGSTAVGKKLMAQGAGTLKKMSLELGGNAPFIVFEDADVDAAVAGAIAAKYRNAGQTCVCTNRFYVHSKVHDEFVMKLVSAVTDLKVGRGTEEGVAQGPLISEAAVRKVEEHVADAVAKGAEILAGGSRHKL-------GGTFFQPTIIAGATKHMKVTEEETFGPLAPIYRFENEEEVLHAASDTPFGLAAYFYSRDLARVWRVSEALEYGMVGVNTGVISSEVAPFGGMKESGHGREGSKYGIDEYMNVKYVA 539
                 699***********************************************************************************************************9.8888888876557788899******************************************************************8331133456999******************************************************************************************************************************************998877.......9****************************************************************************************************************997 PP

>> TIGR03216  OH_muco_semi_DH: 2-hydroxymuconic semialdehyde dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  341.3   3.5  6.1e-105  1.8e-102       4     477 ..      71     538 ..      68     540 .. 0.96

  Alignments for each domain:
  == domain 1    score: 341.3 bits;  conditional E-value: 6.1e-105
   TIGR03216   4 fidGafv..esektfedispvdgkviaevaeagkeevdaavkaaraalkgewgklsvaeraellkkvadeierrfdeflaaevadtGkpkslaskldiprgaanfrvfadvvknvateafematpdGkealnyavrkplGvvgvispwnlplllltwkvapalacGntvvvkpseetpatatllaevmeevGvpkGvynvvhGfGpdsa..GefltrhpdvdaitftGetrtGeaimkaaadgvkevslelGGknaaivfadadldaavegvlrsaflntGqvclgtervyverpifdrfvaalkekaeklklGvpedeaaelGpliskehrdkvlsyyklaveeGatvvtGGGvpelgdelaeGayvqptiwtglpdsarvvkeeifGpvchvapfdseeeviarandtayGlaasvwtedlsrahrvakklevGvvwvnswflrdlrtpfGGsklsGiGreGGvhslefytelknv 477
                  i G+++  ++e++ e ++p++g++++ v + g+e+  +a++aa++al + w+++ +++r+ ll+k  d + +  +++    +++ Gkp + a   +i+ +a+    fa+ +k++  ++  ++ +d +  l  + ++p+Gv + i+pwn+p  ++t k a ala G t+vvkpse tp +a  l  + ee+G+p+Gv nvv     ++a  G  +t++p v+ i+ftG t  G+ +m + a ++k++slelGG  + ivf dad+daav+g + + + n+Gq c++t+r yv+ +++d+fv +l +++ +lk+G  ++e +  Gplis++  +kv  + + av +Ga++++GG   +l     +G++ qpti +g +++ +v +ee fGp++ +  f++eeev++ a dt +Glaa  +++dl+r  rv+++le G+v vn+  +    +pfGG k+sG GreG  + ++ y ++k v
  MMETSP1137-20121227|5782_1  71 CIGGQWTegHAERHVEVTDPATGALLGVVPDMGAEDCRDAIAAAEKALPA-WRQMPAKQRSGLLRKWYDLVLANQKDLAYIMMSEQGKPLAEAM-GEISYAASFIEWFAEEAKRTYGDVIPSTSSDRRM-L--VFKQPVGVCAAITPWNFPSAMITRKAAAALAAGCTMVVKPSEMTPFSALALMALAEEAGIPPGVLNVVTCGSANAAevGSEMTSNPVVKKISFTGSTAVGKKLMAQGAGTLKKMSLELGGNAPFIVFEDADVDAAVAGAIAAKYRNAGQTCVCTNRFYVHSKVHDEFVMKLVSAVTDLKVGRGTEEGVAQGPLISEAAVRKVEEHVADAVAKGAEILAGGSRHKL-----GGTFFQPTIIAGATKHMKVTEEETFGPLAPIYRFENEEEVLHAASDTPFGLAAYFYSRDLARVWRVSEALEYGMVGVNTGVISSEVAPFGGMKESGHGREGSKYGIDEYMNVKYV 538
                 578888865678999*********************************98.**************************************99876.4999*********************999999754.4..579*****************************************************************9877776555899*******************************************************************************************************************************************76555.....69***********************************************************************************************************999876 PP

>> TIGR03374  ABALDH: 1-pyrroline dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  331.0   2.6  8.7e-102   2.6e-99       5     469 ..      71     538 ..      67     540 .. 0.96

  Alignments for each domain:
  == domain 1    score: 331.0 bits;  conditional E-value: 8.7e-102
   TIGR03374   5 liegklvagegekq.avynpatgevileiaeasaeqvdaavraadaafaewgqttpkaraelllkladaieenaevfaklesrncgkplhavlndeipaivdvfrffagaarclsglaageyleghtsmirrdpvgvvasiapwnyplmmaawklapalaagncvvlkpseitpltalklaelakdi.lpagvvnvlfg...rgktvgdaltghekvrmvsltgsiatgehilahtaasikrthmelggkapvivfddadidavvegvrtfgfynagqdctaacriyaqrgiydelveklgkavatlkigapedestelgplsslahlervsaaveeakalshikvitggekvkgkgyyfaptllagakqddaivqkevfgpvvsitvfddeeqvvrwandsryglassvwtkdvgrahrlsarlqygctwvnthfmlvsemphggqklsgygkdmslygledytvvrhi 469
                  i g+  +g+ e++  v +patg  +  +++  ae+   a+ aa++a+  w q   k r+ ll k  d +  n + +a +   + gkpl  ++  ei   +  + +fa  a+   g            ++ ++pvgv a+i+pwn+p  m + k a alaag  +v+kpse+tp++al l  la++  +p+gv+nv+       ++vg  +t  + v+ +s+tgs a g++++a+ a ++k+  +elgg+ap ivf+dad+da v g  +  + nagq c ++ r+y+   ++de+v kl +av+ lk+g   +e    gpl+s+a +++v + v +a a +  ++++gg++ k  g +f+pt++aga ++ ++ ++e fgp+  i  f++ee+v++ a d+ +gla+  +++d+ r  r+s +l+yg   vnt  +     p gg k sg+g++ s yg+++y  v+++
  MMETSP1137-20121227|5782_1  71 CIGGQWTEGHAERHvEVTDPATGALLGVVPDMGAEDCRDAIAAAEKALPAWRQMPAKQRSGLLRKWYDLVLANQKDLAYIMMSEQGKPLAEAM-GEISYAASFIEWFAEEAKRTYGDVIPSTSSDRRMLVFKQPVGVCAAITPWNFPSAMITRKAAAALAAGCTMVVKPSEMTPFSALALMALAEEAgIPPGVLNVVTCgsaNAAEVGSEMTSNPVVKKISFTGSTAVGKKLMAQGAGTLKKMSLELGGNAPFIVFEDADVDAAVAGAIAAKYRNAGQTCVCTNRFYVHSKVHDEFVMKLVSAVTDLKVGRGTEEGVAQGPLISEAAVRKVEEHVADAVAKG-AEILAGGSRHKLGGTFFQPTIIAGATKHMKVTEEETFGPLAPIYRFENEEEVLHAASDTPFGLAAYFYSRDLARVWRVSEALEYGMVGVNTGVISSEVAPFGGMKESGHGREGSKYGIDEYMNVKYV 538
                 68899999*999863799***********************************************************************9988.58999999**********9*****9999999999*******************************************************987559*******9741225679***********************************************************************************************************************************99987.689*****************************************************************************************9988889**********************999987 PP

>> TIGR03250  PhnAcAld_DH: putative phosphonoacetaldehyde dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  295.2   0.0   5.4e-91   1.6e-88      14     467 ..      80     537 ..      67     540 .. 0.92

  Alignments for each domain:
  == domain 1    score: 295.2 bits;  conditional E-value: 5.4e-91
   TIGR03250  14 srdavievrepydgevvgtvpkasvedvrralevaaayrsk...ltryerskileraaellaarkeeisdlitlesGlskkdslyevgrvadvlklaaaevlrddgqifscdltphgkkrkvftlrepllgvisaitpfnhplnqvahkvapaiatnnrvvlkpsekvplsallladllyeaGlpeemlqvvtG...dpreiadelitdehvdlvtftGgvaiGkli.aakag.ykravlelGGndplivledadldraadlavkGsyknsGqrctavkrilvqesvadrftellvektralkyGdpldrsvdlGtvideaaaklfeerveeavaeGarlllgnkrd...GalyaptvldrvdpelalvreetfGpvspvirfkdiddairisnstayglssgvctnrldaitkliaelevGtvnvwevpGyrleltpfGGikdsGlGykeGvqealksftnlkt 467
                 + ++ +ev++p +g ++g vp   +ed r a++ a++  ++   +   +rs +l++  +l+ a++++++ ++  e G   ++++ e+  +a  ++  a+e+ r  g++           r+++  ++p+ gv +aitp+n p  +++ k a a+a+   +v+kpse +p+sal+l+ l  eaG+p+ +l+vvt    + +e+++e+ +++ v+ ++ftG+ a+Gk++ a+ ag  k++ lelGGn p+iv+edad+d a   a++  y+n+Gq c    r+ v+  v d+f+  lv     lk+G   ++ v  G +i eaa +++ee+v +ava+Ga++l+g +r+   G+ + pt++   ++++++ +eetfGp++p+ rf++ ++ ++ +  t +gl++   + +l+++ ++ + le G v v        e++pfGG+k+sG G +eG +  + ++ n+k 
  MMETSP1137-20121227|5782_1  80 HAERHVEVTDPATGALLGVVPDMGAEDCRDAIAAAEKALPAwrqMPAKQRSGLLRKWYDLVLANQKDLAYIMMSEQGKPLAEAMGEISYAASFIEWFAEEAKRTYGDVIPS----TSSDRRMLVFKQPV-GVCAAITPWNFPSAMITRKAAAALAAGCTMVVKPSEMTPFSALALMALAEEAGIPPGVLNVVTCgsaNAAEVGSEMTSNPVVKKISFTGSTAVGKKLmAQGAGtLKKMSLELGGNAPFIVFEDADVDAAVAGAIAAKYRNAGQTCVCTNRFYVHSKVHDEFVMKLVSAVTDLKVGRGTEEGVAQGPLISEAAVRKVEEHVADAVAKGAEILAGGSRHklgGTFFQPTIIAGATKHMKVTEEETFGPLAPIYRFENEEEVLHAASDTPFGLAAYFYSRDLARVWRVSEALEYGMVGVNT-GVISSEVAPFGGMKESGHG-REGSKYGIDEYMNVKY 537
                 6899******************************998777511156689******************************************************99998753....34568899999**7.7*************************************************************952225679***********************98625555537999********************************************************************************************************98885555999************************************************************************974.55788*************9.6899999999999986 PP

>> TIGR01237  D1pyr5carbox2: putative delta-1-pyrroline-5-carboxylate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  273.4   1.9   2.7e-84     8e-82      45     506 ..      82     537 ..      61     541 .. 0.89

  Alignments for each domain:
  == domain 1    score: 273.4 bits;  conditional E-value: 2.7e-84
   TIGR01237  45 eakidsinpadksevvGkvakasvedaeqalqaakkafeewkktdveeraaillkaaailkrrrhelsallvlevGkiyaeadaevaeaidfleyyaremiklakskevlsieGeknrylyiplGvavvispwnfplailvGmtvapivtGncvvlkpaeaatviaaklveileeaGlpkGvlqfvp.G..kGsevGeylvdhpktrlitftGsrevGlriyedaakvqpGqkhlkrviaelGGkdavivdesadieqavaaavtsafGfaGqkcsaasrvvvlekvydevverfveatkslkvgktdeadvqvgpvidqksfdkikeyielgkaeg.klvlggedddskGyfikptifkdvdrkarlaqeeifGpvvavlrakdfdealeiansteygltGgvisnsrerierakaefevGnlyfnrkitGaivg.vqpfGGfkmsGtd...skaGGpdylaqflqakt 506
                 e +++  +pa +   +G v  +  ed  +a+ aa ka+++w++++ ++r+++l+k  + +   +++l+ +++ e Gk++aea  e++ a  f+e++a+e+ +  ++    +    +   + +p Gv+ +i+pwnfp a++   ++a++ +G ++v+kp+e ++  a  l+ + eeaG+p+Gvl+ v  G  +  evG+ +++ p ++ i+ftGs +vG +++++ a        lk++  elGG    iv e+ad++ ava+a+ + +  aGq c  + r  v++kv+de+v ++v a   lkvg++ e  v  gp+i + +  k++e++  + a+g +++ gg+ ++  G f +pti++   ++ ++++ee fGp+  + r ++ +e l+ a +t +gl+   +s+   r+ r  + +e G + +n   tG i + v pfGG k sG +   sk G    + +++++k 
  MMETSP1137-20121227|5782_1  82 ERHVEVTDPA-TGALLGVVPDMGAEDCRDAIAAAEKALPAWRQMPAKQRSGLLRKWYDLVLANQKDLAYIMMSEQGKPLAEAMGEISYAASFIEWFAEEAKRTYGDVIPSTSSDRRMLVFKQPVGVCAAITPWNFPSAMITRKAAAALAAGCTMVVKPSEMTPFSALALMALAEEAGIPPGVLNVVTcGsaNAAEVGSEMTSNPVVKKISFTGSTAVGKKLMAQGA------GTLKKMSLELGGNAPFIVFEDADVDAAVAGAIAAKYRNAGQTCVCTNRFYVHSKVHDEFVMKLVSAVTDLKVGRGTEEGVAQGPLISEAAVRKVEEHVADAVAKGaEILAGGSRHKLGGTFFQPTIIAGATKHMKVTEEETFGPLAPIYRFENEEEVLHAASDTPFGLAAYFYSRDLARVWRVSEALEYGMVGVN---TGVISSeVAPFGGMKESGHGregSKYG----IDEYMNVKY 537
                 3445555555.56789*************************************************************************************999655555555556667789**************************************************************99634224679*************************998755......68************************************************************************************************999887726667788888899*************************************************************************999...676765368*********861114444....445555555 PP

>> TIGR01722  MMSDH: methylmalonate-semialdehyde dehydrogenase (acylating)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  263.6   1.8   2.3e-81   6.8e-79       4     473 ..      71     538 ..      68     541 .. 0.94

  Alignments for each domain:
  == domain 1    score: 263.6 bits;  conditional E-value: 2.3e-81
   TIGR01722   4 lidGkfvegksdkyipvsnpatnevlakvaeasaeevdaavasaretfaawaetsvaerarvllryqallkehrdeiaklisaeqGktledakGdvarGlevvehacsvtslllGetvesvakdvdvysirqplGvvaGitpfnfpamiplwmfplaiacGntfvlkpsekvpsaavklaellseaGapdGvlnvvhGdk.eav...drllehpdvkavsfvGsvavgeyiyetgsahgkrvqalaGaknhmvvlpdadkeaaldalvgaavGaaGqrcmaisaavlvGaa.kelveeireraekvrvgagddpgaelGplitkqakervasliasgakeGaevlldGrgykveGyeeGnfvGitllervkpdmkiykeeifGpvlvvleadtleeaiklinespyGnGtaiftsdGaaarkfqheievGqvGvnvpipvplpffsftGwkdslfGdlhiyGkqGvrfytrlktv 473
                  i+G+  eg+++++++v++pat+  l+ v+   ae+   a+a+a ++ +aw++ +  +r+ +l ++  l+ ++++++a ++++eqGk l++a G++      +e   + +    G++++s + d  +  ++qp+Gv+a itp+nfp+ +       a+a G t+v+kpse  p +a+ l  l +eaG+p Gvlnvv  +  +a     ++   p vk +sf Gs+avg+ +  +g+   k++    G     +v+ dad +aa+  +++a +  aGq c+      +  ++ +e+v +++ ++  ++vg g++ g   Gpli+++a  +v++ +a+++++Gae+l  G   k+     G f  +t++++   +mk+ +ee fGp+  + + +  ee ++   ++p+G  +  +++d a   + +  +e G+vGvn  + +   +  f+G+k+s +G      k G+  y ++k v
  MMETSP1137-20121227|5782_1  71 CIGGQWTEGHAERHVEVTDPATGALLGVVPDMGAEDCRDAIAAAEKALPAWRQMPAKQRSGLLRKWYDLVLANQKDLAYIMMSEQGKPLAEAMGEISYAASFIEWFAEEAKRTYGDVIPSTSSDRRMLVFKQPVGVCAAITPWNFPSAMITRKAAAALAAGCTMVVKPSEMTPFSALALMALAEEAGIPPGVLNVVTCGSaNAAevgSEMTSNPVVKKISFTGSTAVGKKLMAQGAGTLKKMSLELGGNAPFIVFEDADVDAAVAGAIAAKYRNAGQTCVCTNRFYVHSKVhDEFVMKLVSAVTDLKVGRGTEEGVAQGPLISEAAVRKVEEHVADAVAKGAEILAGGSRHKLG----GTFFQPTIIAGATKHMKVTEEETFGPLAPIYRFENEEEVLHAASDTPFGLAAYFYSRDLARVWRVSEALEYGMVGVNTGV-ISSEVAPFGGMKESGHGREG--SKYGIDEYMNVKYV 538
                 699***********************************************************************************************************************************************7777778899****************************************8554133311246899*********************************************************************999988888889*******************************************************999985....68***************************************************************************997.5678899*******888653..45566666666655 PP

>> TIGR03240  arg_catab_astD: succinylglutamic semialdehyde dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  249.5   2.5   4.6e-77   1.3e-74       3     458 ..      72     530 ..      70     539 .. 0.92

  Alignments for each domain:
  == domain 1    score: 249.5 bits;  conditional E-value: 4.6e-77
   TIGR03240   3 idGkwraGqGe.slesldpvtqevlwqgkaasaaqvekavkaarkafpawarlsleeriavvkrfaelleeekeelaeviaketgkplweartevasmvakvaisikayeertGeke.seladakavlrhrphGvlavfGpynfpGhlpnGhivpallaGntvvfkpseltplvaeetvklwekaGlpaGvlnlvqG....aretGkalaaeedidGllftGssntGallhrqlagrpekilalelGGnnplvveevkdidaavhlivqsafisaGqrctcarrllvkdgaeGdallerlvevaerltvgkydaepqpflGavisekaakellaaqekllalggksllelkqleeeaalltpgiid.vtevaevpdeeyfgpllkvlrykdfdealaeanntrfGlaaGllsddrelydkflleiraGivnwnkpltGassaapfGGiGasGnhrpsayyaad 458
                 i G+w++G+ e ++e +dp+t++ l    +  a++ ++a++aa ka+paw ++++++r  +++++ +l+  ++++la ++  e gkpl ea +e++  ++ ++   +  ++  G++  s+ +d + ++ ++p Gv a + p+nfp  +   +   al aG t+v kpse+tp +a +++ l e+aG+p Gvln+v      a e G  +++++ +  + ftGs++ G++l  q ag  +k+ +lelGGn p++v e +d+daav+ ++ + +  aGq c c+ r+ v+++ + d ++ +lv   + l+vg+  +e     G++ise a++++ +  ++++a+g++ l   ++ + + ++++p+ii   t+  +v +ee fgpl  ++r+++ +e l++a +t fGlaa + s d ++  ++ +    G+v  n  +  +s  apfGG+  sG  r  + y  d
  MMETSP1137-20121227|5782_1  72 IGGQWTEGHAErHVEVTDPATGALLGVVPDMGAEDCRDAIAAAEKALPAWRQMPAKQRSGLLRKWYDLVLANQKDLAYIMMSEQGKPLAEAMGEISYAASFIEWFAEEAKRTYGDVIpSTSSDRRMLVFKQPVGVCAAITPWNFPSAMITRKAAAALAAGCTMVVKPSEMTPFSALALMALAEEAGIPPGVLNVVTCgsanAAEVGSEMTSNPVVKKISFTGSTAVGKKLMAQGAGTLKKM-SLELGGNAPFIVFEDADVDAAVAGAIAAKYRNAGQTCVCTNRFYVHSKVH-DEFVMKLVSAVTDLKVGRGTEEG-VAQGPLISEAAVRKVEEHVADAVAKGAEILAGGSRHKLGGTFFQPTIIAgATKHMKVTEEETFGPLAPIYRFENEEEVLHAASDTPFGLAAYFYSRDLARVWRVSEALEYGMVGVNTGVI-SSEVAPFGGMKESGHGREGSKYGID 530
                 89******987257889********************************************************************************9999998777766666776515556666677788****************************************************************7522225789*******************************99886.8********************************************98765.789999999999*****987776.568*******************************************9963788899************************************************************9886.57889**********9987766554 PP

>> TIGR01238  D1pyr5carbox3: delta-1-pyrroline-5-carboxylate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  202.6   0.6   6.6e-63   1.9e-60      55     485 ..      87     523 ..      59     537 .. 0.89

  Alignments for each domain:
  == domain 1    score: 202.6 bits;  conditional E-value: 6.6e-63
   TIGR01238  55 vknpadrkdivGqvseadaaevqeavdsavaafaewsatdakeraailerladlleshmpelvallvreaGktlsnaiaevreavdflryyakqvedvldeesaka............lGavvcispwnfplaiftGqiaaalaaGntviakpaeqtsliaaravellqeaGvpagviqllp.G..rGedvGaaltsderiaGviftGstevarlinkalakredapvpliaetGGqnamivdstalaeqvvadvlasafdsaGqrcsalrvlcvqedvadrvltlikGamdelkvgkpirlttdvGpvidaeakqnllahiekmkakakkvaqvkleddvesekgtfvaptlfe..lddldelkkevfGpvlhvvrykadeldkvvdkinakGygltlGvhsrieetvrqiekrakvGnvyvnrnlvGavvGvqpfGGeGlsGtGpk 485
                 v++pa    ++G v    a++ ++a+ +a +a++ w  ++ak+r+  l++  dl+  +  +l  +++ e Gk l +a+ e+  a  f++++a++++ ++++    +            +G+  +i+pwnfp a+ t + aaalaaG t++ kp+e t++ a   ++l +eaG+p+gv++++  G  + ++vG+ +ts++ ++ + ftGst+v +++   +a+   +   +  e GG    iv   a  +  va  +a+ +  aGq c     ++v  +v d+ +  +  a+ +lkvg+ ++     Gp+i + a +++++h+    ak+    ++    +++   gtf +pt++    ++++  ++e fGp+  + r++++e  +v++   ++ +gl+   +sr    v ++ +  + G v vn  ++ +   v pfGG   sG G  
  MMETSP1137-20121227|5782_1  87 VTDPAT-GALLGVVPDMGAEDCRDAIAAAEKALPAWRQMPAKQRSGLLRKWYDLVLANQKDLAYIMMSEQGKPLAEAMGEISYAASFIEWFAEEAKRTYGDVIPSTssdrrmlvfkqpVGVCAAITPWNFPSAMITRKAAAALAAGCTMVVKPSEMTPFSALALMALAEEAGIPPGVLNVVTcGsaNAAEVGSEMTSNPVVKKISFTGSTAVGKKL---MAQGAGTLKKMSLELGGNAPFIVFEDADVDAAVAGAIAAKYRNAGQTCVCTNRFYVHSKVHDEFVMKLVSAVTDLKVGRGTEEGVAQGPLISEAAVRKVEEHVADAVAKGA---EILAGGSRHKLGGTFFQPTIIAgaTKHMKVTEEETFGPLAPIYRFENEE--EVLHAASDTPFGLAAYFYSRDLARVWRVSEALEYGMVGVNTGVISS--EVAPFGGMKESGHGRE 523
                 556654.467999***********************************************************************************999987444467889********************************************************************99733224578**********************9977...5555555566789******************************************************************************************98776664...556677788999*******996337889999*************99875..89**************************************999987..578*****99998843 PP

>> TIGR01236  D1pyr5carbox1: 1-pyrroline-5-carboxylate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  181.7   0.1   1.6e-56   4.8e-54      36     513 ..      72     534 ..      53     541 .. 0.88

  Alignments for each domain:
  == domain 1    score: 181.7 bits;  conditional E-value: 1.6e-56
   TIGR01236  36 iggkevvksne.lievvaPadhqaklakltnateedvkkaveaaldakkeWselpfadraaiflkaadllsgkyreeilaatmlgqsktvyqaeidavaelidffrfnvkyarelleqqPsvsapgelnkveyrpleGfvaaisPfnftaiaanlagaPal.mGnvvvWkPsktavlsnyllmkileeaGlPpgvinfvpa...dgvkvsdvvladkdlaalhftGstavfkelwkkvasnldkyrnfPrivGetGGkdfvlvhpsadveevvaatirgafeyqGqkcsaasrlyvpkslwkelkeellaelkkvkvgdvddlssfmgavideksfakivkviekakkdpeeleilaGGkyddskGyfvePtvveskdPkeklmkeeifGPvltvyvydddkykeilevvdstskyaltGavfakdreaieeaekklrfaaGnfyindkstGavvgq.qpfGGarlsGtndkaGapkillrfvs 513
                 igg+ +  + e  +ev+ Pa   a l+++   + ed ++a+ aa +a   W ++p ++r+ ++ k  dl+ ++  ++++  +m +q+k   +a  + ++ +  f+ + ++ a+  ++     s+++      ++   G  aai+P+nf +      +a al  G ++v kPs+++ +s+ +lm + eeaG+Ppgv+n+v++   ++++v++ +++++ +  + ftGstav k+l+ + a  l+k      ++ e GG    +v + adv+ +va+ i + +   Gq c  + r yv   + +e+  +l++  +++kvg  ++  +  g++i+e + +k+ + + +a ++    eilaGG   +  G f +Pt++     + k+ +ee fGP+  +y ++++  +e+l+   s + ++l+   +++d + + + +++l +  G   +n   tG + ++  pfGG + sG   + G+   +  +++
  MMETSP1137-20121227|5782_1  72 IGGQWTEGHAErHVEVTDPAT-GALLGVVPDMGAEDCRDAIAAAEKALPAWRQMPAKQRSGLLRKWYDLVLANQ-KDLAYIMMSEQGKPLAEAMGE-ISYAASFIEWFAEEAKRTYGDVI-PSTSSDRRMLVFKQPVGVCAAITPWNFPSAMITRKAAAALaAGCTMVVKPSEMTPFSALALMALAEEAGIPPGVLNVVTCgsaNAAEVGSEMTSNPVVKKISFTGSTAVGKKLMAQGAGTLKK------MSLELGGNAPFIVFEDADVDAAVAGAIAAKYRNAGQTCVCTNRFYVHSKVHDEFVMKLVSAVTDLKVGRGTEEGVAQGPLISEAAVRKVEEHVADAVAKG--AEILAGGSRHKLGGTFFQPTIIAGATKHMKVTEEETFGPLAPIYRFENE--EEVLHAA-SDTPFGLAAYFYSRDLARVWRVSEALEY--GMVGVN---TGVISSEvAPFGGMKESGHG-REGSKYGIDEYMN 534
                 566655555443677788865.7889*******************************************98764.677778888899999988666.89999************998864.36777788899*9999***********99888888888873699**********************************9733356789999**********************9888877765......788******************************************************************************************9999866..89********************************************988..6999875.6689**********************99..556677...6777665369*******964.4555555555555 PP

>> TIGR02278  PaaN-DH: phenylacetic acid degradation protein paaN
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.2   1.0   1.6e-32   4.8e-30       5     425 ..      72     482 ..      69     501 .. 0.84

  Alignments for each domain:
  == domain 1    score: 102.2 bits;  conditional E-value: 1.6e-32
   TIGR02278   5 lsgewetgages.vevadaitGevlarvsseGldlaaavayarevGgkalraltfheraaklkal.akylserkeelyalaattGatrrdnavdidGgigtlftyaskgrrelPdadlliedelealskdgsfqgrhiltpksGvavqinafnfPvwGlleklaPaflaGvPalvkPatatayvaealvklivesgllPeGalqli.vGsvg..dlldhldsr...dvvaftGsaataeklrahpnvleksirfsaeadslnaavlGedvtpdepefdlfvkeivreltakaGqkctairrvlvPkalveavlealkarlakvklGdPreedvklGplvsveqredveaavaallaagaevrlgdp.eeldGaffaPtlllaeepeadavhateafGPvatllayddraeavrlaarGeGslvaslvtad 425
                 + g+w++g++e  vev+d +tG +l  v   G +    +  a e+  +a r++  ++r+  l++     l+++k+  y ++ + G   ++++ +i  + + +  +a  ++r        + +++++    +s     ++    Gv+  i  +nfP   +  k a a+ aG   +vkP+  t + a al+ l  e+g+ P G l+++ +Gs++  ++  ++ s+    ++ ftGs+a ++kl a+ + + k +  s e     + ++ ed+      +d+ v   +      aGq c    r  v  +  ++ +  l++ + ++k+G   ee+v+ Gpl+s     +ve+ va  +a+gae+  g+  ++l G+ff Pt++    ++  +v + e+fGP+a +  +++++e ++ a+     l+a + + d
  MMETSP1137-20121227|5782_1  72 IGGQWTEGHAERhVEVTDPATGALLGVVPDMGAEDCRDAIAAAEKALPAWRQMPAKQRSGLLRKWyDLVLANQKDLAYIMMSEQGKPLAEAMGEISYAASFIEWFAEEAKR--------TYGDVIPS--TSSDRRMLVFKQPVGVCAAITPWNFPSAMITRKAAAALAAGCTMVVKPSEMTPFSALALMALAEEAGI-PPGVLNVVtCGSANaaEVGSEMTSNpvvKKISFTGSTAVGKKLMAQGAGTLKKM--SLELGGNAPFIVFEDAD-----VDAAVAGAIAAKYRNAGQTCVCTNRFYVHSKVHDEFVMKLVSAVTDLKVGRGTEEGVAQGPLISEAAVRKVEEHVADAVAKGAEILAGGSrHKLGGTFFQPTIIAG-ATKHMKVTEEETFGPLAPIYRFENEEEVLHAASDTPFGLAAYFYSRD 482
                 569*****98766****************9999777777778999****************9886267899999999**********************************........34444442..34445566788889**********************************************99999996.77899877588864214445555541116689**************98777755..55666667888889887.....666666666677789**********************************************************************9987615678*******9865.55778999*******************99988877777777665555 PP

>> TIGR02518  EutH_ACDH: acetaldehyde dehydrogenase (acetylating)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.9   0.3   2.8e-12   8.3e-10       9     266 ..     106     368 ..     102     374 .. 0.77

  Alignments for each domain:
  == domain 1    score: 35.9 bits;  conditional E-value: 2.8e-12
   TIGR02518   9 evrnlirsakvaqkklaalsqeqidkivkaivdaaeenavklakmaneetGfGkvedkvlknklaakivydsikdmk.tvG.ileed.kekkvievavpvGvvaglvpstnptstaiyktlisikarnaivlsphpaakkciietvklirkaaekaGapegiiasltvptiegtn...elmknkdtslilatGGeamvkaayssG.....kpaiGvGpGngpayieksanvkkavkkildsktfdnGticaseqsvvvekvnkdavvee 266
                 ++r+ i  a++a     ++  +q   +++   d    n+++la +   e G    e  +    +aa ++     + k t G ++  +  + +++   +pvGv a+++p   p++ +  k+  ++ a+ ++v+ p   +     ++  l++  ae+aG p g++ ++t  + ++++   e+  n  +  i  tG  a+ k   + G     k ++ +G Gn+p  +   a+v+ av   + +k  + G  c   +   v    +d+ v +
  MMETSP1137-20121227|5782_1 106 DCRDAIAAAEKALPAWRQMPAKQRSGLLRKWYDLVLANQKDLAYIMMSEQGKPLAEA-MGEISYAASFIEWFAEEAKrTYGdVIPSTsSDRRMLVFKQPVGVCAAITPWNFPSAMITRKAAAALAAGCTMVVKPSEMT---PFSALALMA-LAEEAGIPPGVLNVVTCGSANAAEvgsEMTSNPVVKKISFTGSTAVGKKLMAQGagtlkKMSLELG-GNAPFIVFEDADVDAAVAGAIAAKYRNAGQTCVCTNRFYVHSKVHDEFVMK 368
                 679999999999999999999999999999999999999999999999999877665.4455677777665555544277755555405567888899**********************************997554...566777776.5799********999998877654332777777777788888888777666655111113444554.9*******************************9998888887777776654 PP

>> TIGR02288  PaaN_2: phenylacetic acid degradation protein paaN
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.7   4.7   1.4e-10   4.1e-08      84     456 ..     105     459 ..      70     470 .. 0.68

  Alignments for each domain:
  == domain 1    score: 29.7 bits;  conditional E-value: 1.4e-10
   TIGR02288  84 vdtdalleaakkalkgwrdaGararvgvcleilqrlnkrslelahavmhttGqafmmafqaGGphaqdrGleavayayremsripetavwekpqGkkdplklekrfeiv...prGialvigcstfptwntypGlfaslatGnavlvkphpgailplaltvkvarevlaeaGfdpnlvalaa..eeaeeevaqrlaldpavrivdftGsnafGewleqnarqa..qvytekaGvntviiestddlk.avlrnlafslslysGqmctttqailvprdGirtdegrksydevaadlaaaidkllgdd.aravallGaiqsedtvaria....earalGevlldskklehpefpdarvrtplllkvdaadeaayaeerfGpiafvvavdd 456
                  d    ++aa+kal++wr++ a+ r g   +  + + +               a++m  + G p a+  G   ++ya   ++   e+a   +  G   p + + r  +v   p G++  i+   fp+        a+la+G +++vkp + + +  al++ +   +  eaG+ p ++ +++  + + +ev  +++ +p v+ + ftGs+a G+ l ++   +  ++  e+ G    i+    d+  av+  +a +    +Gq c +t+  +v           k +de + +l +a+ +l      +     G + se++v +++    +a a+G  +l+  +++     + +   p +++  + + +   ee+fGp+a + + ++
  MMETSP1137-20121227|5782_1 105 EDCRDAIAAAEKALPAWRQMPAKQRSGLLRKWYDLVLANQK----------DLAYIMMSEQGKPLAEAMG--EISYAASFIEWFAEEAK--RTYGDVIPSTSSDRRMLVfkqPVGVCAAITPWNFPSAMITRKAAAALAAGCTMVVKPSEMTPFS-ALAL-M--ALAEEAGIPPGVLNVVTcgSANAAEVGSEMTSNPVVKKISFTGSTAVGKKLMAQGAGTlkKMSLELGGNAPFIVFEDADVDaAVAGAIA-AKYRNAGQTCVCTNRFYVH---------SKVHDEFVMKLVSAVTDLKVGRgTEEGVAQGPLISEAAVRKVEehvaDAVAKGAEILAGGSRH---KLGGTFFQPTIIAGATKHMKVTEEETFGPLAPIYRFEN 459
                 45556799999999999999999999865444444333333..........3466777777888887554..67888777777777775..45566666555444443323367888899999999999999999************98765433.3332.2..234589****88776652144578999**********************9987654431156668888777666555555505555555.556789***********95.........467899999999999888654404444456888888777665511114555554333333322...23456677888888888888889999999987766555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (543 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       124  (0.0302292); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                        20  (0.00487567); expected 4.1 (0.001)
Passed Fwd filter:                        14  (0.00341297); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.66u 0.17s 00:00:00.83 Elapsed: 00:00:00.60
# Mc/sec: 1194.50
//
Query:       MMETSP1137-20121227|5783_1  [L=529]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (529 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       127  (0.0309605); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.15s 00:00:00.50 Elapsed: 00:00:00.44
# Mc/sec: 1586.87
//
Query:       MMETSP1137-20121227|5784_1  [L=552]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   4.2e-241  798.8   1.0   5.2e-241  798.5   0.7    1.0  1  TIGR00962 atpA: ATP synthase F1, alpha subunit
   9.9e-171  566.6   2.1   1.2e-170  566.3   1.5    1.0  1  TIGR03324 alt_F1F0_F1_al: alternate F1F0 ATPase, F1 subunit alpha
    1.8e-59  199.4   1.0    2.3e-59  199.0   0.7    1.1  1  TIGR02546 III_secr_ATP: type III secretion apparatus H+-transporting two-sector ATPase
    2.9e-55  185.6   1.5    3.9e-55  185.1   1.0    1.1  1  TIGR03496 FliI_clade1: flagellar protein export ATPase FliI
    6.4e-55  184.3   1.8    8.2e-55  184.0   1.2    1.1  1  TIGR03498 FliI_clade3: flagellar protein export ATPase FliI
    8.7e-53  177.4   2.3    1.2e-52  176.9   1.6    1.1  1  TIGR01026 fliI_yscN: ATPase FliI/YscN family
    7.8e-51  171.1   0.6      1e-50  170.8   0.4    1.1  1  TIGR03497 FliI_clade2: flagellar protein export ATPase FliI
    1.6e-42  143.3   1.6    2.1e-42  142.9   1.1    1.1  1  TIGR01041 ATP_syn_B_arch: ATP synthase archaeal, B subunit
    1.4e-32  110.7   0.2    1.9e-32  110.2   0.1    1.1  1  TIGR01040 V-ATPase_V1_B: V-type ATPase, B subunit
    2.8e-31  106.6   0.8    3.8e-31  106.2   0.5    1.1  1  TIGR01039 atpD: ATP synthase F1, beta subunit
    1.1e-24   84.8   0.5    1.5e-24   84.4   0.3    1.1  1  TIGR03305 alt_F1F0_F1_bet: alternate F1F0 ATPase, F1 subunit beta
    2.4e-23   80.2   2.4    3.4e-15   53.3   0.0    2.1  2  TIGR01043 ATP_syn_A_arch: ATP synthase archaeal, A subunit
    2.8e-18   63.7   3.1    2.5e-13   47.3   0.1    2.1  2  TIGR01042 V-ATPase_V1_A: V-type ATPase, A subunit
    0.00081   16.2   0.0     0.0015   15.3   0.0    1.4  1  TIGR00767 rho: transcription termination factor Rho


Domain annotation for each model (and alignments):
>> TIGR00962  atpA: ATP synthase F1, alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  798.5   0.7  1.8e-243  5.2e-241       5     502 ..      47     551 ..      44     552 .] 0.98

  Alignments for each domain:
  == domain 1    score: 798.5 bits;  conditional E-value: 1.8e-243
   TIGR00962   5 eeiselikkeikkfekeieaeevGtvvsvadGiakveGlenvlskeliefeggvkgialnleedsvGvvilGdyseikeGsevkrtgevlevpvGdallGrvvnalGepidGkGdiesee.fsavekkaPgvierksvkePlqtGikaidaliPiGrGqreliiGdrqtGktavaidtiinqkdsk......kdvkcvyvaiGqkestvaqvvekleekgaleytivvaasasdsaslqylaPyagvalaeyfrdkgkdaliiyddlskqavayrqlslllrrPPGreayPGdvfylhsrlleraaklsdekGaGsltalPiietqagdvsayiPtnvisitdGqiflesdlfnsGirPainvGlsvsrvGgaaqikaikkvaGslrlelaqyreleafsqfasdldeatkkqlerGkrlvellkqeqskPlsveeqvvilyavtkgylddipvekvakfeeelleyldkekkelleeikkkkklteeleeklkevleefkkkfa 502
                 +e+s++i+ +i ++ +e+e ee+G+v+ ++dGia+v+Gle+v ++e++ef++g +g+alnle d+vGvv++G+   ikeG++vkrtg ++++pvGd+llGrvv+ lG+pidGkG+i  +  ++++e kaPg+i r+sv+eP+++G+kaid+l+P+GrGqreliiGdrqtGktava+dtiinqk+ +      k + c+yva+Gqk+stvaq++++l +++a+ yt++vaa+asd+a lq+laPy+g+a++eyfrd+g++alii+ddlskqavayrq+slllrrPPGreayPGdvfylhsrllera+k+s+e  +Gs+talP+ietqagdvsayiPtnvisitdGqifle++lf++GirPainvGlsvsrvG+aaq ka+k+v+G+l+lelaqyre++af+qf+sdld+at++ l+rG+rl e+lkq+q+ P++ +eqvv++ya+t+g+ld++ v++v  ++e+ll++++++++ +l+ei k + l+ el++++ ++l +f++ f+
  MMETSP1137-20121227|5784_1  47 SELSSIIEAKIMNYGSEVELEEIGKVLAIGDGIARVHGLEKVQAGEMVEFNSGLRGMALNLESDNVGVVVFGNDRAIKEGDTVKRTGAIIDIPVGDGLLGRVVDGLGDPIDGKGPIGGNPvRQRIEVKAPGIIARQSVHEPMESGLKAIDSLVPVGRGQRELIIGDRQTGKTAVALDTIINQKSINdqgdksKSLFCIYVAVGQKRSTVAQLMKTLIDTEAMPYTTIVAATASDAAPLQFLAPYSGCAIGEYFRDNGMHALIIFDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERASKMSKEMLGGSMTALPVIETQAGDVSAYIPTNVISITDGQIFLEAELFYRGIRPAINVGLSVSRVGSAAQRKAMKQVSGTLKLELAQYREVAAFAQFGSDLDAATQHLLNRGARLQEMLKQNQYVPMPFQEQVVCIYAGTRGFLDKLAVSDVGPYQEKLLAFVKANHQPILDEIFKAGVLSPELDKTMSTMLTKFTADFS 551
                 799*****************************************************************************************************************98761567***********************************************************97777888899******************************************************************************************************************************************************************************************************************************************************************************************************************99886 PP

>> TIGR03324  alt_F1F0_F1_al: alternate F1F0 ATPase, F1 subunit alpha
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  566.3   1.5  4.2e-173  1.2e-170      12     494 ..      53     544 ..      43     547 .. 0.95

  Alignments for each domain:
  == domain 1    score: 566.3 bits;  conditional E-value: 4.2e-173
   TIGR03324  12 leearesaapelalkevGtvesvskGiakvsGlpgvgveellkfpGdllGiafnvdedevGvvllgeysklqaGdevertgrvldvpvGdellGrvvdplGrpldgkkelass.krlpierpapeimdrapvtvplqtGlkvvdalipiGrGqrelilGdrqtGktaiaidtilnqk........dknvlcvycaiGqrasavakvvaelrekgaldytivvvtegndppGlqyiapyaatsiaeyfmeqGrdvlivyddltkharayrelslllrrppGreafpGdifyvhsrllersthlrkerGGGsltalpiieteaqnisayiptnlisitdGqiylspelfelGvlpavdvGksvsrvGGkaqlaayravaGdlklayaqfeeleafarfgarldeetrkvierGrrirailkqtessplsvaeqivillalseelfdaveldklseaekaisaavtelpadlveklesakklsdedreaildiak 494
                 +e    +  +e++l+e+G+v  +  Gia+v+Gl +v+  e+++f+ +l G+a+n++ d+vGvv++g+   ++ Gd v+rtg ++d+pvGd+llGrvvd lG p+dgk+++  +  r  ie +ap i+ r++v +p+++Glk +d+l+p+GrGqreli+GdrqtGkta+a+dti+nqk         k + c+y a+Gq+ s+va+++++l +++a+ yt++v +   d + lq++apy+  +i+eyf ++G   li++ddl+k a ayr++slllrrppGrea+pGd+fy+hsrller++++ ke+ GGs+talp+iet+a ++sayiptn+isitdGqi+l  elf +G+ pa++vG svsrvG  aq+ a ++v+G lkl  aq+ e+ afa+fg+ ld++t+++++rG r++++lkq++  p++ +eq+v + a + + +d++ ++++   ++++ a v+   +++++++ +a  ls e  +++ ++++
  MMETSP1137-20121227|5784_1  53 IEAKIMNYGSEVELEEIGKVLAIGDGIARVHGLEKVQAGEMVEFNSGLRGMALNLESDNVGVVVFGNDRAIKEGDTVKRTGAIIDIPVGDGLLGRVVDGLGDPIDGKGPIGGNpVRQRIEVKAPGIIARQSVHEPMESGLKAIDSLVPVGRGQRELIIGDRQTGKTAVALDTIINQKsindqgdkSKSLFCIYVAVGQKRSTVAQLMKTLIDTEAMPYTTIVAATASDAAPLQFLAPYSGCAIGEYFRDNGMHALIIFDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERASKMSKEMLGGSMTALPVIETQAGDVSAYIPTNVISITDGQIFLEAELFYRGIRPAINVGLSVSRVGSAAQRKAMKQVSGTLKLELAQYREVAAFAQFGSDLDAATQHLLNRGARLQEMLKQNQYVPMPFQEQVVCIYAGTRGFLDKLAVSDVGPYQEKLLAFVKANHQPILDEIFKAGVLSPELDKTMSTMLT 544
                 55556678899***************************************************************************************************8652699***********************************************************83332222135699*******************************************************************************************************************************************************************************************************************************************************************************************9999999988888877765 PP

>> TIGR02546  III_secr_ATP: type III secretion apparatus H+-transporting two-sector ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  199.0   0.7   7.9e-62   2.3e-59       4     415 ..      67     484 ..      64     491 .. 0.91

  Alignments for each domain:
  == domain 1    score: 199.0 bits;  conditional E-value: 7.9e-62
   TIGR02546   4 evlgrvtevsgtllkavlp.earvgelclikekekeseleaevvgfeedealLsplgelsglslgseviplgrplsikvgeelLGrvldglGrpldgkkelkakeikkrpldaepPdplsRqkieqplalGvraiDglltvgeGqRiGifaeaGvGkstL.lsmiarg.........akadvivlaLiGeRGRevrefiekelgeekrkrsvlvvstsdrsslerlkaayvataiaeyfRdqgkkvllllDsltRfaralreigLaaGepparrgyppsvfsslprlleRaGasek....GsitalYtvLvegddmndpiadevrsilDGhivLsrklaernhyPaiDvlaslsRvlkkvvskehkkaaaklrellakykevellirlGeYkkGsdkeaDkaikkldeikkflrqsldekssyeetl 415
                 e +g+v ++   + ++  + +++ ge+++ +     s l+   + +e+d++ ++ +g+ + +++g +v  +g   +i vg+ lLGrv+dglG+p+dgk+++  + ++ + +  ++P  + Rq +++p+  G++aiD+l+ vg+GqR  i ++  +Gk+++ l +i+++         +k+  ++ + +G +   v   +++ ++ e++  + +v++t+  ++  +  a y + ai eyfRd+g + l++ D l++ a a r+++L    pp r+ yp  vf   +rlleRa +  k    Gs+tal  + ++  d++  i  +v si DG i+L  +l  r+  Pai+v  s+sRv ++  +k  k+  ++l+  la+y+ev  + + G      d+++ + +++  ++++ l+q++   + ++e +
  MMETSP1137-20121227|5784_1  67 EEIGKVLAIGDGIARVHGLeKVQAGEMVEFN-----SGLRGMALNLESDNVGVVVFGNDRAIKEGDTVKRTGAIIDIPVGDGLLGRVVDGLGDPIDGKGPIGGNPVR-QRIEVKAPGIIARQSVHEPMESGLKAIDSLVPVGRGQRELIIGDRQTGKTAVaLDTIINQksindqgdkSKSLFCIYVAVGQKRSTVAQLMKTLIDTEAMPYTTIVAATASDAAPLQFLAPYSGCAIGEYFRDNGMHALIIFDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERASKMSKemlgGSMTALPVIETQAGDVSAYIPTNVISITDGQIFLEAELFYRGIRPAINVGLSVSRVGSAAQRKAMKQVSGTLKLELAQYREVAAFAQFGS---DLDAATQHLLNRGARLQEMLKQNQYVPMPFQEQV 484
                 5678888888888888755268899999988.....5777778999*****************************************************99999877.89***********************************************976488888762111111113445789999********************************************************************************************************9877556779************************************************************************************99996...679999999*************999888888765 PP

>> TIGR03496  FliI_clade1: flagellar protein export ATPase FliI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  185.1   1.0   1.3e-57   3.9e-55       1     406 [.      70     482 ..      70     488 .. 0.90

  Alignments for each domain:
  == domain 1    score: 185.1 bits;  conditional E-value: 1.3e-57
   TIGR03496   1 Gkltkvaglvleavgl.kasvgelveieeeegesveaevvgfeeeklllmpleeveglalgakvvlleeekklpvgeellGrvidalgepldgkgaleaeee.vsleaepinplkrerieevldvGvrainalltvgkGqrlglfagsGvGKs.vLlgmlaratead.........vvvvaLiGERgREvkefieknLgeeglkrsvvvaatadespllrlraaalataiaeyfrdqgkdvLllmDSltRfAmAqReialaiGEppatkgYppsvfaklpkLvEraGngkeg..kGsitafytvLvegddqqdpiadaaraiLDGHivLsRelaeaghyPaidieaSiSRvmkkvvseehlkaarklkqllsryeenrdlisigaYkkGsdpelDeaiklvpklekflqqeveekvslee 406
                 Gk+  +   + +++gl k++ ge+ve+    ++ ++++ +++e++++ ++ + + ++++ g++v  + +   +pvg+ llGrv+d+lg+p+dgkg++  +   +++e +++  ++r+ ++e+++ G++ai++l++vg+Gqr  ++     GK+ v l  ++ +++++           +   +G +   v +++++ + +e++  + +vaata +++ l+  a ++  ai eyfrd+g + L+++D l++ A A R+++l +  pp   +Yp  vf   ++L+Era + +++   Gs+ta+  + ++  d +  i  ++ +i DG i L+ el  +g+ Pai++  S+SRv +++  ++ +++  +lk  l++y+e+  + + g   +  d+++ + +++  +l+++l+q+    + ++e
  MMETSP1137-20121227|5784_1  70 GKVLAIGDGIARVHGLeKVQAGEMVEF----NSGLRGMALNLESDNVGVVVFGNDRAIKEGDTVKRTGAIIDIPVGDGLLGRVVDGLGDPIDGKGPIGGNPVrQRIEVKAPGIIARQSVHEPMESGLKAIDSLVPVGRGQRELIIGDRQTGKTaVALDTIINQKSINdqgdkskslFCIYVAVGQKRSTVAQLMKTLIDTEAMPYTTIVAATASDAAPLQFLAPYSGCAIGEYFRDNGMHALIIFDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERASKMSKEmlGGSMTALPVIETQAGDVSAYIPTNVISITDGQIFLEAELFYRGIRPAINVGLSVSRVGSAAQRKAMKQVSGTLKLELAQYREVAAFAQFG---SDLDAATQHLLNRGARLQEMLKQNQYVPMPFQE 482
                 566667777778888877889999988....566899************************************************************9775427889999999***************************************7366888877665432222333333455679***9*****************************************************************************************************9877679*******************************************************************************9998887766...567888888899999999999999877666665 PP

>> TIGR03498  FliI_clade3: flagellar protein export ATPase FliI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  184.0   1.2   2.8e-57   8.2e-55       1     410 [.      70     483 ..      70     489 .. 0.90

  Alignments for each domain:
  == domain 1    score: 184.0 bits;  conditional E-value: 2.8e-57
   TIGR03498   1 GrvsevkgllvevaGlsaavrlGdlveieaeegkkvlaevvgleedevllmpfeslegvelgaavvveeealevrpeeswlGRvidalgepiDgkgalaegeaavpvkaeppaalsRkrveeklktGvrvidlfltlcrGqRlGifaGsGvGkstl.lsmlaraaaa.D...vv.....vialvGeRGRevrefleddlgeeglkrsvvvvatsDesplmRrkaayvalaiaeyfRdqgkdvllllDsvtRfakaqReialaageppvarGYtpsvfselPrLLeRaGpGaeg..kGsitglftvLvdgDdhnePvaDavrgilDGhivldRaiaergryPainvlksvsRlakkvlspeekklvkrlrallaryeetedlirlGayrkGsdaevDeavklvpkieeflkqekeeatsleda 410
                 G+v ++ + + +v+Gl+++ + G++ve+++     +++  ++le+d+v ++ f + ++++ g++v  + +   + + + +lGRv+d lg piDgkg++  +++++ ++ ++p  ++R+ v+e+++ G+++id++++++rGqR  i      Gk+++ l  +++++++ D   ++     +   vG +   v ++++  +  e +  + +v at+ +++ ++  a+y+  ai eyfRd+g + l+++D + + a a R+++l    pp    Y+  vf    rLLeRa   +++   Gs+t+l  +  ++ d    +  +v +i DG i l+ +++ rg  Painv  svsR+ + ++ +++k++   l+  la+y+e++ + + G+     da+  + ++  ++++e+lkq++  ++ ++++
  MMETSP1137-20121227|5784_1  70 GKVLAIGDGIARVHGLEKV-QAGEMVEFNSG----LRGMALNLESDNVGVVVFGNDRAIKEGDTVKRTGAIIDIPVGDGLLGRVVDGLGDPIDGKGPIGGNPVRQRIEVKAPGIIARQSVHEPMESGLKAIDSLVPVGRGQRELIIGDRQTGKTAVaLDTIINQKSInDqgdKSkslfcIYVAVGQKRSTVAQLMKTLIDTEAMPYTTIVAATASDAAPLQFLAPYSGCAIGEYFRDNGMHALIIFDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERASKMSKEmlGGSMTALPVIETQAGDVSAYIPTNVISITDGQIFLEAELFYRGIRPAINVGLSVSRVGSAAQRKAMKQVSGTLKLELAQYREVAAFAQFGS---DLDAATQHLLNRGARLQEMLKQNQYVPMPFQEQ 483
                 7899999999*****9987.99****99765....578899****************************************************************************************************************8653555544433213222322222255679*****************************888888899*****************************************************************9876552369******************************************************************************99999888885...567777888999999999999998877776665 PP

>> TIGR01026  fliI_yscN: ATPase FliI/YscN family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  176.9   1.6   4.2e-55   1.2e-52      22     432 ..      67     484 ..      49     489 .. 0.87

  Alignments for each domain:
  == domain 1    score: 176.9 bits;  conditional E-value: 4.2e-55
   TIGR01026  22 kvvGrvkkvkgllieakgp.qasvGevclierkgsekkevvaevvgfegekvllmpyeevegveagskvlaknealsvkvgegllGrvldalGkplDekgk.aldnvekelitapinPlkrakieevlstGvrsidalltvgkGqrlGifaGsGvGkst..LlGmiaratead........vnvialiGerGrevkefiekdLgeeglkrsvvvvatsDespllrlkgayvataiaeyfrdqGkdvlllmDsvtrfakaqreigLaaGepPatkGytPsvfsllpklleraGasek....GsitafytvLveGDDlnePiaDevrailDGhivLsralaerglyPaidvlasisrllkaivseekkkavrkfrellskykenedLiriGaYkkGsdkelDkaikkleklerflkqdieekvnfeesl 432
                 + +G+v ++   + + +g+ +++ Ge+++ +      + ++++ + +e ++v ++ + +  ++++g++v  +++ ++++vg+gllGrv+d+lG+p+D+kg    ++v++++  + +  + r+ ++e ++ G ++id+l++vg+Gqr  i      Gk +  L  +i +++  d          +   +G +   v + ++  +  e +  + +v+at+ +++ l+  + y++ ai eyfrd+G + l+++D + + a a r ++L +  pP ++ y+  vf l ++llera + +k    Gs+ta+  + ++  D++  i  +v +i DG i L+ +l+ rg+ Pai+v  s+sr+ +a   + +k++  +++  l++y+e+    + G+     d+   + ++  ++l++ lkq++   + f+e +
  MMETSP1137-20121227|5784_1  67 EEIGKVLAIGDGIARVHGLeKVQAGEMVEFN------SGLRGMALNLESDNVGVVVFGNDRAIKEGDTVKRTGAIIDIPVGDGLLGRVVDGLGDPIDGKGPiGGNPVRQRIEVKAPGIIARQSVHEPMESGLKAIDSLVPVGRGQRELIIGDRQTGKTAvaLDTIINQKSINDqgdkskslFCIYVAVGQKRSTVAQLMKTLIDTEAMPYTTIVAATASDAAPLQFLAPYSGCAIGEYFRDNGMHALIIFDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERASKMSKemlgGSMTALPVIETQAGDVSAYIPTNVISITDGQIFLEAELFYRGIRPAINVGLSVSRVGSAAQRKAMKQVSGTLKLELAQYREVAAFAQFGSDL---DAATQHLLNRGARLQEMLKQNQYVPMPFQEQV 484
                 5556666665555555544145667776666......348899********************************************************98566789999*****************************************9999*98521445565544333222333323455669******************************999999*******************************************************************9444334548*********************************************************************************9999988765...5555667899999*******999999999876 PP

>> TIGR03497  FliI_clade2: flagellar protein export ATPase FliI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  170.8   0.4   3.4e-53     1e-50       1     405 [.      70     483 ..      70     489 .. 0.88

  Alignments for each domain:
  == domain 1    score: 170.8 bits;  conditional E-value: 3.4e-53
   TIGR03497   1 Gkvkkvvglvieakgp.kakiGelcsikkkeekkvlaevvgfkeekvlLmPleevegiapgslveatgkklavkvgkellGkvldglGepldekelvkkke.klpleaeppnplkrkrikdvlevgvkaidglltvGkGqrvGifagsGvGkstl.l.gmiarnakad........inviaLvGerGrevrefiekdLgeeGlkksvvvvatsdqpallrlkaalvataiaeyfrdqGkkvllmmDsvtrfamaqrevglavgepPttkGytpsvfsllpklleraGksek....GsitglytvLvdgDdlnePiaDavrgilDGhivLsreLaeknhyPaidvlksvsrvmeeivseehkelaeklrellavykeaedlikigaykkgsnkkideaiekkekinkfLkqkidekvtfeet 405
                 Gkv  + + + + +g+ k++ Ge+++ +    + +    + ++ ++v ++ +++ + i  g++v+ tg  + ++vg+ llG+v+dglG+p+d+k+++ ++  ++ +e ++p  ++r+ +++++e g+kaid+l+ vG+Gqr  i      Gk+++ l ++i +++  d          +   vG++   v +++++ +  e +  + +v+at+ ++a l+  a + + ai eyfrd+G + l++ D + + a a r+++l  + pP ++ y   vf l  +llera k +k    Gs+t+l  + +++ d+   i+  v +i DG i L+ eL  ++  Pai+v  svsrv ++   +  k+++++l+  la y+e   + + g+     +++ ++ ++   ++++ Lkq++   + f+e+
  MMETSP1137-20121227|5784_1  70 GKVLAIGDGIARVHGLeKVQAGEMVEFN----SGLRGMALNLESDNVGVVVFGNDRAIKEGDTVKRTGAIIDIPVGDGLLGRVVDGLGDPIDGKGPIGGNPvRQRIEVKAPGIIARQSVHEPMESGLKAIDSLVPVGRGQRELIIGDRQTGKTAVaLdTIINQKSINDqgdkskslFCIYVAVGQKRSTVAQLMKTLIDTEAMPYTTIVAATASDAAPLQFLAPYSGCAIGEYFRDNGMHALIIFDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERASKMSKemlgGSMTALPVIETQAGDVSAYIPTNVISITDGQIFLEAELFYRGIRPAINVGLSVSRVGSAAQRKAMKQVSGTLKLELAQYREVAAFAQFGSDL---DAATQHLLNRGARLQEMLKQNQYVPMPFQEQ 483
                 6777787778888887678999999884....5577778999******************************************************99854156788899999**************************************9864242566665544322233332456678*******************************99***********************************************************************9965445669********************************************************************************99998888644...4555556777778888888887776666665 PP

>> TIGR01041  ATP_syn_B_arch: ATP synthase archaeal, B subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  142.9   1.1   7.2e-45   2.1e-42      12     350 ..      79     418 ..      68     449 .. 0.89

  Alignments for each domain:
  == domain 1    score: 142.9 bits;  conditional E-value: 7.2e-45
   TIGR01041  12 lvlvekveevaydeiveielpdGekrrGqvldsseglvvvqvfegttgldkeatkvrflGetlklkvsedllGrilngsGepidgGpeivpd.errdinGaalnpaareypeefiqtGisaidGlntlvrGqklpifsgsGlphnelalq.iarqakvrgee...sefavvfaalGitaeeanffkkdfektGaleravvflnladdpaverivtprlaltvaeylafekdlhvlviltdltnycealreisaareevpGrrGypGylytdlatlyeraGrvkGk..kGsitqipiltmpdddithpipdltGyiteGqivlsrelhrkGiyppinvlpslsrlmk 350
                 +  v++ e+v  +e+ve +   G   rG  l+ +++ v v vf   + +++  t v+ +G  ++++v   llGr+++g+G+pidg   i  +  r+ i+ +a    ar+  +e +++G+ aid l  + rGq+  i+      +  +al  i +q ++++++   +++  ++ a+G ++  + +++k++  t a+  ++++ + a d a  + ++p    ++ ey+  ++++h l+i+ dl+  + a r++s      pGr+ ypG ++   + l era ++  +   Gs+t +p++     d++  ip     it+Gqi+l+ el+ +Gi+p inv  s+sr+ +
  MMETSP1137-20121227|5784_1  79 IARVHGLEKVQAGEMVEFNS--G--LRGMALNLESDNVGVVVFGNDRAIKEGDT-VKRTGAIIDIPVGDGLLGRVVDGLGDPIDGKGPIGGNpVRQRIEVKAPGIIARQSVHEPMESGLKAIDSLVPVGRGQRELIIGDRQTGKTAVALDtIINQKSINDQGdksKSLFCIYVAVGQKRSTVAQLMKTLIDTEAMPYTTIVAATASDAAPLQFLAPYSGCAIGEYFR-DNGMHALIIFDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERASKMSKEmlGGSMTALPVIETQAGDVSAYIPTNVISITDGQIFLEAELFYRGIRPAINVGLSVSRVGS 418
                 55678888888888887653..3..5899999999999999********99999.*****************************977776651577899999999********************************999999999998548899999877644445678899****************************************************96.99***************************************************98763369******************************************************744 PP

>> TIGR01040  V-ATPase_V1_B: V-type ATPase, B subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  110.2   0.1   6.4e-35   1.9e-32      38     388 ..     101     442 ..      82     462 .. 0.85

  Alignments for each domain:
  == domain 1    score: 110.2 bits;  conditional E-value: 6.4e-35
   TIGR01040  38 kgqvlevsgekavvqvfegtsgidakkttveftgdilrlpvsedmlgrvfngsgkpidkgpkvlaedyl.dingqpinpkariypeemiqtgisaidvmnsiargqkiplfsaaglphneiaaq.icrqaglvkksekdvkdekeenfaivfaamgvnletarffkqdfeengslervtlflnlandptieriitprlalttaeylayekekhvlviltdmssyadalrevsaareevpgrrgfpgymytdlatiyeragrvegr..ngsitqipiltmpnddithpipdltgyitegqiyvdrqlhnrqiyppinvlpslsrlmksaigegmtrkdhsdvsnqlyakyaigkdv 388
                 +g  l++++++  v vf     i     tv+ tg i+ +pv + +lgrv +g g pid   ++  +  +  i+ ++    ar   +e +++g+ aid++  + rgq+  ++      +  +a + i+ q ++         d++++ f+i + a+g    t   + + + ++ ++  +t+    a d +  + ++p    +  ey+  + ++h l+i+ d+s  a a r++s      pgr  +pg ++   + + era +++     gs+t +p++     d++  ip     it+gqi+++ +l+ r i p inv  s+sr+  +       rk   +vs  l  + a  ++v
  MMETSP1137-20121227|5784_1 101 RGMALNLESDNVGVVVFGNDRAIKEGD-TVKRTGAIIDIPVGDGLLGRVVDGLGDPIDGKGPIGGNPVRqRIEVKAPGIIARQSVHEPMESGLKAIDSLVPVGRGQRELIIGDRQTGKTAVALDtIINQKSIND-----QGDKSKSLFCI-YVAVGQKRSTVAQLMKTLIDTEAMPYTTIVAATASDAAPLQFLAPYSGCAIGEYFR-DNGMHALIIFDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERASKMSKEmlGGSMTALPVIETQAGDVSAYIPTNVISITDGQIFLEAELFYRGIRPAINVGLSVSRVGSA-----AQRKAMKQVSGTLKLELAQYREV 442
                 678888888888899998888887655.6899**************************888887776541577788788999999*************************999999888888652555555443.....44556666665.788999999988888999999*********************************96.789**************************************************9654227*****************************************************996555.....55555556666665555555555 PP

>> TIGR01039  atpD: ATP synthase F1, beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  106.2   0.5   1.3e-33   3.8e-31      45     413 ..     104     480 ..      78     495 .. 0.88

  Alignments for each domain:
  == domain 1    score: 106.2 bits;  conditional E-value: 1.3e-33
   TIGR01039  45 aqhlGddlvraialdstdGlvrglevkdtgkpievpvGkevlGrilnvlGepidekgevkkke.klsihrkapsfeeqstkveiletGikvidllapyakGGkiglfGGaGvGkt.vliqelinniakehsG......lsvfaGvGertreGndlylelkesgvldkvalvyGqmneppGarlrvaltgltlaeyfrdeegqdvllfidnifrftqaGsevsallGrlpsavGyqptlatemGelqeritstkk....gsitsvqavyvpaddltdpapattfahldattvlsrkiaelGiypavdpldstsrlldpevvGeehyevarevqeilqrykelqdiiailGldelseedklvverarkierflsqpffvaevf 413
                 a +l  d v ++ +++   ++ g +vk tg+ i++pvG+  lGr+++ lG+pid kg++  +  ++ i  kap +  +++ +e +e+G+k id l p  +G +  + G    Gkt v +  +in+ +++ +G      +++++ vG++     +l + l++++ + ++++v     +    ++   ++g ++ eyfrd+     l+  d++ + + a  ++s ll r p    y   +     +l er +   k    gs+t++  +   a d++   p+ + +  d+++ l+ +++  Gi pa++   s sr+ +++   +   +v+  ++  l +y+e+    a +G d l    + +++r  +++++l q+ +v   f
  MMETSP1137-20121227|5784_1 104 ALNLESDNVGVVVFGNDRAIKEGDTVKRTGAIIDIPVGDGLLGRVVDGLGDPIDGKGPIGGNPvRQRIEVKAPGIIARQSVHEPMESGLKAIDSLVPVGRGQRELIIGDRQTGKTaVALDTIINQKSINDQGdkskslFCIYVAVGQKRSTVAQLMKTLIDTEAMPYTTIVAATASDAAPLQFLAPYSGCAIGEYFRDNGM-HALIIFDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERASKMSKemlgGSMTALPVIETQAGDVSAYIPTNVISITDGQIFLEAELFYRGIRPAINVGLSVSRVGSAAQ-RKAMKQVSGTLKLELAQYREVAA-FAQFGSD-LDAATQHLLNRGARLQEMLKQNQYVPMPF 480
                 66788899999************************************************87752699***********************************************94456667777666665533333367899**********************************999******************877.67777899************************9999999999999987654334449*****************************************************9877654.56677899999999999999975.6788865.888889999************99987666 PP

>> TIGR03305  alt_F1F0_F1_bet: alternate F1F0 ATPase, F1 subunit beta
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.4   0.3     5e-27   1.5e-24      39     404 ..     104     477 ..      83     500 .. 0.84

  Alignments for each domain:
  == domain 1    score: 84.4 bits;  conditional E-value: 5e-27
   TIGR03305  39 laqldakkvrgialtateglargmavkdsgaplkapvgkeilsrvfdvfgntidrreslkdvkwr.svhqappaltrrssksevfetgikaidvlvplerggkaglfggagvgktvlltelihnlvs.qeeg...vslfc...gigercregeelyremkeagvldntvmvfgqmneppgarfrvglaaltmaeyfrddekkdvlllidnifrfiqagsevsgllgqlpsrlgyqptlgtelaeleeriatted....aaitsiqavyvpaddftdpaavhtfshlsaslvlsrkraseglypaidplkstsklatpsivgerhyklarevrrvlaqyeelkdiiamlgleelskedrrvvararrlerfltqpfftt 404
                 +++l++++v  + + + + +  g++vk +ga + +pvg  +l+rv+d +g++id + +  +   r  +  + p +  r s  e +e+g+kaid lvp+ rg +  ++g    gkt +  + i n  s +++g    slfc    +g++     +l + + ++  ++ t +v     +    +f   ++  ++ eyfrd+   + l++ d++ +   a  ++s ll + p r  y   +    + l er ++ ++    +++t++  +   a d +       +s     + l       g+ pai+   s s++ + +   +   +++  ++  laqy e+    a +g  +l +  +++++r  rl+ +l q  +  
  MMETSP1137-20121227|5784_1 104 ALNLESDNVGVVVFGNDRAIKEGDTVKRTGAIIDIPVGDGLLGRVVDGLGDPIDGKGPIGGNPVRqRIEVKAPGIIARQSVHEPMESGLKAIDSLVPVGRGQRELIIGDRQTGKTAVALDTIINQKSiNDQGdksKSLFCiyvAVGQKRSTVAQLMKTLIDTEAMPYTTIVAATASDAAPLQFLAPYSGCAIGEYFRDNG-MHALIIFDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERASKMSKemlgGSMTALPVIETQAGDVSAYIPTNVISITDGQIFLEAELFYRGIRPAINVGLSVSRVGSAA-QRKAMKQVSGTLKLELAQYREVAA-FAQFG-SDLDAATQHLLNRGARLQEMLKQNQYVP 477
                 5688999999999999*****************************************9977655524777777888888889999*****************************9776666555433133332227888855579*999999*********************************************976.5678999***************************999999999999999887722224455555555566666665556777888889******************99999986544.45566789999**********976.57778.57999999************99987765 PP

>> TIGR01043  ATP_syn_A_arch: ATP synthase archaeal, A subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.1   0.9     2e-09   5.9e-07       3      91 ..      70     157 ..      68     175 .. 0.92
   2 !   53.3   0.0   1.2e-17   3.4e-15     199     434 ..     179     414 ..     162     443 .. 0.83

  Alignments for each domain:
  == domain 1    score: 26.1 bits;  conditional E-value: 2e-09
   TIGR01043   3 GeivrvsGplvvaeglkgakmyevvkvgeekliGeiiriegdkaviqvyeetsGikpgepvestGaplsvelGpGllesiydGvqrpld 91 
                 G+++ +   +   +gl++ +  e+v+  +++l G  +++e d++ + v+ +   ik g++v++tGa + + +G Gll+++ dG+  p+d
  MMETSP1137-20121227|5784_1  70 GKVLAIGDGIARVHGLEKVQAGEMVEF-NSGLRGMALNLESDNVGVVVFGNDRAIKEGDTVKRTGAIIDIPVGDGLLGRVVDGLGDPID 157
                 78888888889999***********97.689*****************************************************99987 PP

  == domain 2    score: 53.3 bits;  conditional E-value: 1.2e-17
   TIGR01043 199 keklepeeplvtGqrildtlfpiakGGtaaipGpfGsGkt.......vtqqslakw...sdaeivvyiGcGerGnemtevleefpeledpktGkpllertvliantsnmpvaareasiytGitiaeyfrdmGydvalvadstsrwaealreisgrleempgeeGypa...ylasrlaefyeraGrvktlgseeregsvtvvgavsppGGdfsepvtqntlrivkvfwaldaklaerrhfpainwlqsys 434
                   +++ +ep+ +G + +d+l p+ +G    i G   +Gkt       + q+s+      s++   +y+  G++   +++ ++ + +          +  t+++a t+      +  + y G +i eyfrd G   +++ d  s+ a a r++s  l   pg e yp    yl srl    era ++   ++e   gs+t +  +    Gd+s  +  n + i      l+a+l  r   pain   s s
  MMETSP1137-20121227|5784_1 179 IARQSVHEPMESGLKAIDSLVPVGRGQRELIIGDRQTGKTavaldtiINQKSINDQgdkSKSLFCIYVAVGQKRSTVAQLMKTLID-------TEAMPYTTIVAATASDAAPLQFLAPYSGCAIGEYFRDNGMHALIIFDDLSKQAVAYRQMSLLLRRPPGREAYPGdvfYLHSRL---LERASKM---SKEMLGGSMTALPVIETQAGDVSAYIPTNVISITDGQIFLEAELFYRGIRPAINVGLSVS 414
                 45677899*******************************95333333346666654111556689*******99999888876544.......3468899999999998888889999************************************************8444666666...7899765...5676779****************************9999***************877776 PP

>> TIGR01042  V-ATPase_V1_A: V-type ATPase, A subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.4   1.6e-06   0.00047      25      90 ..      92     156 ..      68     160 .. 0.82
   2 !   47.3   0.1   8.7e-16   2.5e-13     200     445 ..     178     421 ..     164     447 .. 0.82

  Alignments for each domain:
  == domain 1    score: 16.7 bits;  conditional E-value: 1.6e-06
   TIGR01042  25 elvrvgheelvgeiirlegdkatiqvyeetagltvgdpvlrtgkplsvelgpgilgnifdgiqrpl 90 
                 e+v   ++ l g  + le+d++ + v+ +   ++ gd+v+rtg  + + +g g+lg + dg+  p+
  MMETSP1137-20121227|5784_1  92 EMVEF-NSGLRGMALNLESDNVGVVVFGNDRAIKEGDTVKRTGAIIDIPVGDGLLGRVVDGLGDPI 156
                 45544.456889999**********************************************99887 PP

  == domain 2    score: 47.3 bits;  conditional E-value: 8.7e-16
   TIGR01042 200 vaeklaadtplltgqrvldalfpsvqggttaipgafgcgkt......visq.sls...kysnsdvivyvgcgergnemaevlrdfpeltveldgreesimkrttlvantsnmpvaareasiytgitlaeyfrdmgynvsmladstsrwaealreisgrlaempadsgypaylgarlasfyeragrvkclgsperegsvsivgavsppggdfsdpvtsatlgivqvfwgldkklaqrkhfpsvnwlisyskylkale 445
                 ++ + + ++p+ +g + +d+l p  +g    i g    gkt      +i q s+      s s   +yv  g++   +a++++ +       d   +  m  tt+va t+      +  + y+g ++ eyfrd g++  ++ d  s+ a a r++s  l   p  + yp  +    + + era ++    +    gs++ +  +    gd s  + +  ++i++    l+  l  r   p++n+ +s s+  +a +
  MMETSP1137-20121227|5784_1 178 IIARQSVHEPMESGLKAIDSLVPVGRGQRELIIGDRQTGKTavaldtIINQkSINdqgDKSKSLFCIYVAVGQKRSTVAQLMKTLI------D---TEAMPYTTIVAATASDAAPLQFLAPYSGCAIGEYFRDNGMHALIIFDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERASKMS---KEMLGGSMTALPVIETQAGDVSAYIPTNVISITDGQIFLEAELFYRGIRPAINVGLSVSRVGSAAQ 421
                 456778899*******************************8222222344423331113567778999999999988887766442......3...356999*******99999999999*************************************************866665666689999864...556679***************************98888*******************999776655 PP

>> TIGR00767  rho: transcription termination factor Rho
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0     5e-06    0.0015     157     193 ..     193     230 ..     182     267 .. 0.83

  Alignments for each domain:
  == domain 1    score: 15.3 bits;  conditional E-value: 5e-06
   TIGR00767 157 rvldliaPiGkGqralivaPPkaGktvl.lqeianait 193
                 + +d ++P+G+Gqr li+   ++Gkt + l+ i n  +
  MMETSP1137-20121227|5784_1 193 KAIDSLVPVGRGQRELIIGDRQTGKTAVaLDTIINQKS 230
                 678999********************763666766544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (552 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       132  (0.0321794); expected 82.0 (0.02)
Passed bias filter:                      100  (0.0243784); expected 82.0 (0.02)
Passed Vit filter:                        20  (0.00487567); expected 4.1 (0.001)
Passed Fwd filter:                        14  (0.00341297); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.64u 0.12s 00:00:00.76 Elapsed: 00:00:00.88
# Mc/sec: 827.93
//
Query:       MMETSP1137-20121227|5785_1  [L=511]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (511 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       265  (0.0646026); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.16s 00:00:00.55 Elapsed: 00:00:00.61
# Mc/sec: 1105.68
//
Query:       MMETSP1137-20121227|5786_1  [L=270]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0047   14.4   0.0      0.007   13.9   0.0    1.2  1  TIGR00095 TIGR00095: RNA methyltransferase, RsmD family


Domain annotation for each model (and alignments):
>> TIGR00095  TIGR00095: RNA methyltransferase, RsmD family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.0   1.7e-06     0.007     114     179 ..     165     235 ..     148     245 .. 0.69

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 1.7e-06
   TIGR00095 114 alavlakketvfdiiylDPPfevkl...leailelllenkilnekalivveeeee..eelptspetlellk 179
                 +la  ++ +  +d ++ DPPf       l ++l+ +      n  a +++ +++    +l +  ++++l +
  MMETSP1137-20121227|5786_1 165 DLAQPCALDFSYDAVFCDPPFANFDlhqLRKTLATISGSSEQNRAAALYIAYNSRreAKLYNAFSEWRLRR 235
                 56666788889*********977551335666666666666666677777666552366777777777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (270 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        50  (0.0121892); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.23u 0.15s 00:00:00.38 Elapsed: 00:00:00.54
# Mc/sec: 659.95
//
Query:       MMETSP1137-20121227|5787_1  [L=74]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (74 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       105  (0.0255973); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.12s 00:00:00.26 Elapsed: 00:00:00.26
# Mc/sec: 375.66
//
Query:       MMETSP1137-20121227|5788_1  [L=410]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.012   13.7   0.1      0.022   12.9   0.0    1.4  1  TIGR03057 xxxLxxG_by_4: X-X-X-Leu-X-X-Gly heptad repeats


Domain annotation for each model (and alignments):
>> TIGR03057  xxxLxxG_by_4: X-X-X-Leu-X-X-Gly heptad repeats
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   5.3e-06     0.022       6      25 ..     175     194 ..     170     197 .. 0.89

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 5.3e-06
   TIGR03057   6 dGagqLasGagqLasGanqL 25 
                 dG++q+a+G++q  +G+  L
  MMETSP1137-20121227|5788_1 175 DGSSQAADGTNQVPDGSRRL 194
                 89*************99776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (410 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        67  (0.0163335); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.28u 0.13s 00:00:00.41 Elapsed: 00:00:00.41
# Mc/sec: 1319.89
//
Query:       MMETSP1137-20121227|5789_1  [L=499]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.6e-20   70.5   0.5    5.1e-20   70.0   0.3    1.2  1  TIGR02349 DnaJ_bact: chaperone protein DnaJ
    7.3e-12   42.3   1.2    7.3e-12   42.3   0.8    1.5  2  TIGR03835 termin_org_DnaJ: terminal organelle assembly protein TopJ


Domain annotation for each model (and alignments):
>> TIGR02349  DnaJ_bact: chaperone protein DnaJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.0   0.3   2.5e-23   5.1e-20       2      76 ..     129     199 ..     128     255 .. 0.77

  Alignments for each domain:
  == domain 1    score: 70.0 bits;  conditional E-value: 2.5e-23
   TIGR02349   2 YYeiLgvskdAseeeikkAYrklakkyHPDrnkgekeaeekfkeineAyevLsdeekraqYDqfghagleggagg 76 
                 +Y++Lgv+ dAs++++kkAY k+a+k HPD+       +ekf+ +  Ay+vLsd+ kr++YD+ g a++++++ +
  MMETSP1137-20121227|5789_1 129 FYDTLGVEPDASQAQLKKAYYKIAMKEHPDKGG----DKEKFQAVGAAYQVLSDNAKRKKYDEQGMAAMQETTLT 199
                 9*****************************998....569*****************************998665 PP

>> TIGR03835  termin_org_DnaJ: terminal organelle assembly protein TopJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.3   0.8   3.6e-15   7.3e-12       3     119 ..     128     254 ..     125     265 .. 0.81
   2 ?   -4.3   0.8      0.43   8.8e+02     331     385 ..     354     408 ..     339     411 .. 0.67

  Alignments for each domain:
  == domain 1    score: 42.3 bits;  conditional E-value: 3.6e-15
   TIGR03835   3 DyyevLgidrDadeqeikkafrkLakkyhPDrnkaadaakifaeineandvLsnPkkraryDkyGhDGvDreddldfdadvfdsffeeieksdefddlt..............dddkkskkkkkkkkkgwf 119
                  +y+ Lg+++Da + ++kka+ k+a k hPD+  +    + f+ +  a++vLs+  kr++yD  G   + +e  l     vf  +f e +  d   +lt               +++ksk k+ +k+k+  
  MMETSP1137-20121227|5789_1 128 TFYDTLGVEPDASQAQLKKAYYKIAMKEHPDKGGDK---EKFQAVGAAYQVLSDNAKRKKYDEQGMAAM-QETTLTDPGIVFAMMFGERKFEDWCGELTqvitlrleedasltPEQRKSKLKDLQKRKEQV 254
                 59*****************************88764...45999*********************9987.5788887888999999998888888888888889998765555555555555555665555 PP

  == domain 2    score: -4.3 bits;  conditional E-value: 0.43
   TIGR03835 331 evistvsveatdqlkpkevdqiqeelkktkeieveelptkkadlveievddleel 385
                 +++  +++e+t + + +e  ++qe+l +  ++++e      a lv  + + ++e+
  MMETSP1137-20121227|5789_1 354 DAKDGAAKEPTPEEDAEERAKLQEHLFNVMALDIESTVGAAASLVLSDTSVTKEV 408
                 4555566777777777777777777777777777777777777776666666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (499 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       200  (0.0487567); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.36u 0.13s 00:00:00.49 Elapsed: 00:00:00.50
# Mc/sec: 1317.25
//
Query:       MMETSP1137-20121227|5790_1  [L=747]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.7e-08   31.8   0.0    8.5e-05   19.6   0.0    2.4  2  TIGR02409 carnitine_bodg: gamma-butyrobetaine hydroxylase
    1.7e-05   22.3   0.0    0.00079   16.9   0.0    2.1  2  TIGR02410 carnitine_TMLD: trimethyllysine dioxygenase
    0.00012   19.0   0.0      0.013   12.4   0.0    2.8  3  TIGR01293 Kv_beta: voltage-dependent potassium channel beta subunit


Domain annotation for each model (and alignments):
>> TIGR02409  carnitine_bodg: gamma-butyrobetaine hydroxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.5   0.0   7.1e-05     0.096     181     258 ..     171     248 ..     159     262 .. 0.87
   2 !   19.6   0.0   6.2e-08   8.5e-05     298     341 ..     343     384 ..     338     396 .. 0.83

  Alignments for each domain:
  == domain 1    score: 9.5 bits;  conditional E-value: 7.1e-05
   TIGR02409 181 AYtnlgLslHtDlPardhvPtlqlLhclestveGGdsllvDGFavaeaLrkekpeafkiLsstsvefreeGddkvdlr 258
                 A  +  +++H ++ + d+ P   +  c ++++ GG   ++   +va  Lr+ +p+    L++  v++     ++ dl+
  MMETSP1137-20121227|5790_1 171 APPSELIPFHHEMAQCDERPAFIMFFCEKEAAAGGATPIIPSDEVAMYLRARHPAVAAKLAEHGVRYVRVMPSENDLS 248
                 55566689************************************************9999999999987766666665 PP

  == domain 2    score: 19.6 bits;  conditional E-value: 6.2e-08
   TIGR02409 298 aAlrrfvelieepelkltfkleeGdlvlfdntRllHaRdafeak 341
                 aAl   +e++++  +++ fk ++Gd++l+dn  ++H+R++f ++
  MMETSP1137-20121227|5790_1 343 AALEDVAEMMHR--SRIAFKWQQGDILLLDNAAVMHSRETFTPP 384
                 577777888865..5678999********************964 PP

>> TIGR02410  carnitine_TMLD: trimethyllysine dioxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    3.1   0.0    0.0088        12     182     233 ..     180     231 ..     169     252 .. 0.83
   2 !   16.9   0.0   5.8e-07   0.00079     311     343 ..     355     387 ..     334     394 .. 0.85

  Alignments for each domain:
  == domain 1    score: 3.1 bits;  conditional E-value: 0.0088
   TIGR02410 182 HtDgtYfeetpGlqlFHlLkhdgtGGetvlvDvfkvaeklkkkapedfelLt 233
                 H +    +e p   +F + k +  GG t ++ + +va  l+ ++p     L+
  MMETSP1137-20121227|5790_1 180 HHEMAQCDERPAFIMFFCEKEAAAGGATPIIPSDEVAMYLRARHPAVAAKLA 231
                 6666677899999****************************99997655555 PP

  == domain 2    score: 16.9 bits;  conditional E-value: 5.8e-07
   TIGR02410 311 nevevklkpGevlifDnwRvlHaRtsFtGkRrl 343
                   + +k + G++l++Dn  v+H+R++Ft  Rr+
  MMETSP1137-20121227|5790_1 355 SRIAFKWQQGDILLLDNAAVMHSRETFTPPRRV 387
                 468999**********************99997 PP

>> TIGR01293  Kv_beta: voltage-dependent potassium channel beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.4   0.0   9.5e-06     0.013       8     122 ..     427     530 ..     425     541 .. 0.76
   2 !    2.5   0.0    0.0098        13     128     187 ..     564     619 ..     561     642 .. 0.82
   3 ?   -0.4   0.0     0.075     1e+02     258     278 ..     664     684 ..     652     704 .. 0.86

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 9.5e-06
   TIGR01293   8 ksglrvsclglgtwvvfgsqisdeqaedllklayesginlfdiaevyaagkaetelgkilkkk...g.wrrssyvittkifwggkaeeerglsrkhiieglkaslerlqleyvdivlan 122
                 ks  r+ ++g+g w +         a+  +  a+  g   +d a  y     e+++g+ ++++   g  rr  + +t+k++ +         s  h+  + + sl  lql+yvd+ l++
  MMETSP1137-20121227|5790_1 427 KSHDRLPAVGFGLWKTPRDV----CAD-AVVAAISAGYRHLDCACDYG---NEAQVGEGIRRAideGlVRREELWVTSKLWNT-------YHSAEHVEMACRKSLSDLQLDYVDLYLVH 530
                 67778999999999886433....333.44579999********9999...67777777776522242577788888886444.......457789999****************9987 PP

  == domain 2    score: 2.5 bits;  conditional E-value: 0.0098
   TIGR01293 128 spmeevvramtyvinqglalywgtsrwsaveimeaysvarqfnlippiveqaeyhlfqre 187
                  p++e+ ram  ++ +gla   g +      + +  +    +  ipp v q e h++ ++
  MMETSP1137-20121227|5790_1 564 VPLHETWRAMEALVGKGLARNIGMCNVGCQTLRDMMT----YAAIPPAVLQVELHVYNQQ 619
                 5999*******************99988777766555....4579999999999998764 PP

  == domain 3    score: -0.4 bits;  conditional E-value: 0.075
   TIGR01293 258 alaeklgctlaqlaiawslrs 278
                  +a+k g t+aq+ +aw +++
  MMETSP1137-20121227|5790_1 664 RIADKHGKTPAQVLLAWGVQR 684
                 69***************9875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (747 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        75  (0.0182838); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.48u 0.18s 00:00:00.65 Elapsed: 00:00:00.50
# Mc/sec: 1971.92
//
Query:       MMETSP1137-20121227|5791_1  [L=156]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (156 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        88  (0.0214529); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.13s 00:00:00.30 Elapsed: 00:00:00.30
# Mc/sec: 686.34
//
Query:       MMETSP1137-20121227|5792_1  [L=620]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (620 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       104  (0.0253535); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.14s 00:00:00.52 Elapsed: 00:00:00.57
# Mc/sec: 1410.92
//
Query:       MMETSP1137-20121227|5793_1  [L=285]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (285 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        87  (0.0212092); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.16s 00:00:00.43 Elapsed: 00:00:00.28
# Mc/sec: 1343.46
//
Query:       MMETSP1137-20121227|5794_1  [L=330]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.7e-06   25.9   3.0    1.7e-06   25.9   2.1    1.7  1  TIGR03902 rhom_GG_cterm: rhombosortase


Domain annotation for each model (and alignments):
>> TIGR03902  rhom_GG_cterm: rhombosortase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.9   2.1   4.1e-10   1.7e-06       9      95 ..     174     265 ..     166     269 .. 0.92

  Alignments for each domain:
  == domain 1    score: 25.9 bits;  conditional E-value: 4.1e-10
   TIGR03902   9 aaiaegewWRlltghlvHlnwaHlllnlagllllvllferrlrarrllllllllsllislglllllpeleaY.....vGLSGvlhGlfalga 95 
                  a+++g +  llt+++ H+++ Hl+ n++ ++ l+  +++ l ++ ll+l++l++l++sl+ +l+   l +      vG SGv+ +l+a+ a
  MMETSP1137-20121227|5794_1 174 RALQKGRLFVLLTANISHYSLLHLIHNMLQIMHLGPTIQAVLGCEDLLCLMVLSALGSSLASVLWNGVLGERphvgsVGASGVAMSLVAANA 265
                 5678889999*******************************************************9999988888889*********99865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (330 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       116  (0.0282789); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.27u 0.15s 00:00:00.42 Elapsed: 00:00:00.36
# Mc/sec: 1209.90
//
Query:       MMETSP1137-20121227|5795_1  [L=525]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.06   10.4   0.0       0.11    9.5   0.0    1.3  1  TIGR03275 methan_mark_8: putative methanogenesis marker protein 8


Domain annotation for each model (and alignments):
>> TIGR03275  methan_mark_8: putative methanogenesis marker protein 8
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   0.0   2.6e-05      0.11     216     255 ..     479     518 ..     466     520 .. 0.89

  Alignments for each domain:
  == domain 1    score: 9.5 bits;  conditional E-value: 2.6e-05
   TIGR03275 216 tsCaskairelakkkallqvgsavPvyaltkkGkelller 255
                   C s++ re+ +++++l v  + P +a t +Gk+ll+ r
  MMETSP1137-20121227|5795_1 479 KDCDSQTFREAENEIYKLMVQDSYPRFAKTVEGKKLLTSR 518
                 46**********************************9877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (525 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       162  (0.0394929); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.15s 00:00:00.49 Elapsed: 00:00:00.49
# Mc/sec: 1414.17
//
Query:       MMETSP1137-20121227|5796_1  [L=114]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (114 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        91  (0.0221843); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.13s 00:00:00.28 Elapsed: 00:00:00.28
# Mc/sec: 537.38
//
Query:       MMETSP1137-20121227|5798_1  [L=515]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (515 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       329  (0.0802048); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.15s 00:00:00.51 Elapsed: 00:00:00.41
# Mc/sec: 1657.91
//
Query:       MMETSP1137-20121227|5799_1  [L=728]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   2.9e-131  435.7   0.0   1.7e-130  433.2   0.0    1.9  1  TIGR00612 ispG_gcpE: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
  ------ inclusion threshold ------
      0.012   11.9   0.0      0.019   11.2   0.0    1.2  1  TIGR02041 CysI: sulfite reductase (NADPH) hemoprotein, beta-component


Domain annotation for each model (and alignments):
>> TIGR00612  ispG_gcpE: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  433.2   0.0  8.1e-134  1.7e-130       1     357 []      60     702 ..      60     702 .. 0.98

  Alignments for each domain:
  == domain 1    score: 433.2 bits;  conditional E-value: 8.1e-134
   TIGR00612   1 rrktrkvrvGnvkvGgdapikvqsmtntlttDidstveqikaLeeagcdivRvtvqdieeaealekikerlialklnvPlvaDihfalkkaallvadavdkvRinPGniidkrk...........s.......leekvadlvekakrlgkalRiGvnaGsLserllekygddtaealvqsaleyiavlekldfrdvvlslkasnvkelvaayrqlakrlD.....vpLhlGvteaGmgvkGiiksavgigtlLaegiGdtiRvsLteeptkeikva..........................................................................................................................................................................................................................................................................feiLqelGlRkvkvelvaCPsCgRtlfdleevvkrvrkrtqhlkgplkvavmGCivngpGeakdaDlGlvgsktgaialyvkgkkvkakiseedaaeelikliq 357
                 rrktr+v+ G++k G+++pi+ q+m +tlt+D++++veqi + ++ g d+vR+tv ++++a+a++ ike l + + ++Pl aD+hf  +k al+vada +k+RinPGn+ d rk           +         e +++lvek+krl+ a+RiG n+GsLs r+l+ yg dt+ ++v+sa+e+++++   d++++v+s+kasn+ ++v+ayr+la +       +pLhlGvteaG+g++G++ksa+gig+lLa+g+GdtiRvsLte+p++e k +                                                                                                                                                                                                                                                                          f++Lq   +R++k+e+v+CPsCgRtlfdl+ev++++  rt hl+g +++a+mGCivngpGe++daD+G+vg+  g+++lyv ++ v++ i++e+a +eli+li+
  MMETSP1137-20121227|5799_1  60 RRKTRTVTAGKLKFGSEHPIVRQTMATTLTADVAASVEQIIKCADEGFDLVRLTVVGMKDAKACHGIKEGLLKKGYDIPLCADMHF-QPKVALEVADAFEKIRINPGNFADGRKtfeemvyetdeQyfaerdyFVEVFTPLVEKCKRLERAMRIGTNHGSLSARVLSFYG-DTPRGMVESAIEFADICRAEDYHNFVFSMKASNPLVMVQAYRLLAAEQYrlgwdYPLHLGVTEAGEGEDGRMKSAIGIGALLADGLGDTIRVSLTEDPEHEYKPCnrlaeiggmrmtpeaaeaqaavpaykdsrdifsfarragrlpeqkegdeldyrgllnrdgsvlsavtvemlrepqtlykqlgaktvvglpfkdistsdslllrtvpaeddavarqtlkrladvavhaivpaaalaetplpgavslytlpeakgatdahcvisvrgdetkdelaalagishdfllldppaeisrlhasrrlfamlkeldidsavvhhfrpetypmtelalqmgaqiggllcdglgdgvlvepveptafaldsvrlasFGLLQGSRMRNTKTEFVSCPSCGRTLFDLQEVTAQISARTGHLPG-VSIAIMGCIVNGPGEMADADFGYVGGAPGKVDLYVGKEVVRRAIPNEQACDELIELIK 702
                 8*************************************************************************************.8889999*****************9997877777666505556677899**********************************.********************************************9876444455**************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************.*******************************************************996 PP

>> TIGR02041  CysI: sulfite reductase (NADPH) hemoprotein, beta-component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   9.3e-06     0.019     401     498 ..     601     689 ..     591     719 .. 0.72

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 9.3e-06
   TIGR02041 401 GlidgkvtalrknslacvalptcplamaeaerylpdfiakldkilekyGladeeivlrvtGc.pnGcarallaeiglvGkapGrynlylGgdregsrln 498
                 Gl++   +++r+     v+ p+c+       r l d+ +   +i ++ G       + + Gc  nG +  + a+ g+vG apG+ +ly+G +  +  ++
  MMETSP1137-20121227|5799_1 601 GLLQ--GSRMRNTKTEFVSCPSCG-------RTLFDLQEVTAQISARTGHLPGV-SIAIMGCiVNGPGEMADADFGYVGGAPGKVDLYVGKEVVRRAIP 689
                 5555..445555555666666666.......55666666666677777766554.455667747**************************998877766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (728 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       104  (0.0253535); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.15s 00:00:00.67 Elapsed: 00:00:00.56
# Mc/sec: 1685.76
//
Query:       MMETSP1137-20121227|5800_1  [L=454]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (454 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        76  (0.0185275); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.14s 00:00:00.46 Elapsed: 00:00:00.78
# Mc/sec: 768.24
//
Query:       MMETSP1137-20121227|5801_1  [L=910]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.9e-05   22.2   3.4       0.54    8.5   0.2    4.2  4  TIGR01557 myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class


Domain annotation for each model (and alignments):
>> TIGR01557  myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.0     0.065   2.7e+02      17      38 ..     402     420 ..     387     422 .. 0.77
   2 !    7.5   0.0   0.00027       1.1       2      26 ..     450     474 ..     449     484 .. 0.90
   3 !    2.9   0.0    0.0071        29       3      31 ..     503     527 ..     501     543 .. 0.75
   4 !    8.5   0.2   0.00013      0.54       2      26 ..     555     578 ..     555     590 .. 0.86

  Alignments for each domain:
  == domain 1    score: -0.2 bits;  conditional E-value: 0.065
   TIGR01557  17 AvqklGgedkatPkkIlelmkv 38 
                  v+++Gg+++    k++++m++
  MMETSP1137-20121227|5801_1 402 LVEQYGGHEW---EKVAAEMSE 420
                 589*******...999999976 PP

  == domain 2    score: 7.5 bits;  conditional E-value: 0.00027
   TIGR01557   2 krvvWteelhrrFlqAvqklGgedk 26 
                 kr vW+e+++ +   Av +lG  ++
  MMETSP1137-20121227|5801_1 450 KRRVWSEDENIKLQAAVAELGSSNW 474
                 699*******************998 PP

  == domain 3    score: 2.9 bits;  conditional E-value: 0.0071
   TIGR01557   3 rvvWteelhrrFlqAvqklGgedkatPkk 31 
                 + +Wt e++r  + A  +lG   k  P+ 
  MMETSP1137-20121227|5801_1 503 KGKWTLEEDRLLIAACHQLGP--K--PRW 527
                 568*****************7..4..454 PP

  == domain 4    score: 8.5 bits;  conditional E-value: 0.00013
   TIGR01557   2 krvvWteelhrrFlqAvqklGgedk 26 
                 kr +Wt+e+++r l+Av  +    +
  MMETSP1137-20121227|5801_1 555 KRSWWTKEEDERLLDAVALFPD-RW 578
                 689**************98866.55 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (910 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       123  (0.0299854); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.16s 00:00:00.69 Elapsed: 00:00:00.57
# Mc/sec: 2070.86
//
Query:       MMETSP1137-20121227|5802_1  [L=422]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0031   15.1   0.0       0.02   12.5   0.0    1.9  2  TIGR00231 small_GTP: small GTP-binding protein domain
     0.0062   13.9   0.0      0.009   13.4   0.0    1.1  1  TIGR00157 TIGR00157: ribosome small subunit-dependent GTPase A
  ------ inclusion threshold ------
      0.019   12.3   0.0      0.031   11.6   0.0    1.3  1  TIGR01166 cbiO: cobalt ABC transporter, ATP-binding protein
      0.019   12.0   0.0       0.03   11.3   0.0    1.3  1  TIGR02030 BchI-ChlI: magnesium chelatase ATPase subunit I
      0.019   11.0   0.0       0.03   10.4   0.0    1.2  1  TIGR03925 T7SS_EccC_b: type VII secretion protein EccCb
      0.031   11.5   0.0       0.05   10.8   0.0    1.2  1  TIGR02315 ABC_phnC: phosphonate ABC transporter, ATP-binding protein
      0.032   10.5   0.0      0.045   10.0   0.0    1.3  1  TIGR02442 Cob-chelat-sub: cobaltochelatase subunit
      0.034   11.0   0.0       0.31    7.8   0.0    2.0  2  TIGR03594 GTPase_EngA: ribosome-associated GTPase EngA
      0.058   10.1   0.0          4    4.1   0.0    2.1  2  TIGR03156 GTP_HflX: GTP-binding protein HflX


Domain annotation for each model (and alignments):
>> TIGR00231  small_GTP: small GTP-binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.5   0.0   4.3e-05      0.02       5      24 ..     142     161 ..     139     164 .. 0.88
   2 ?   -0.2   0.0      0.35   1.6e+02     113     155 ..     228     267 ..     204     274 .. 0.60

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 4.3e-05
   TIGR00231   5 kivivGhvdvGKstLlnsll 24 
                  +v+vG+ +vGKstL+  l+
  MMETSP1137-20121227|5802_1 142 HVVVVGDEGVGKSTLIRALR 161
                 79*************98875 PP

  == domain 2    score: -0.2 bits;  conditional E-value: 0.35
   TIGR00231 113 vpiilvvnKiDlkddlktkvkslfakl.naepiielsaetgkni 155
                 v+++ v nK Dl      +    ++ l +  p+i +s+e g+n+
  MMETSP1137-20121227|5802_1 228 VVMVAVCNKTDLMP----CPLPQIEDLhKSLPFIAVSVERGTNV 267
                 55666778888766....22222333303344788888888776 PP

>> TIGR00157  TIGR00157: ribosome small subunit-dependent GTPase A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.0     2e-05     0.009      33     144 ..      50     162 ..      34     168 .. 0.73

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 2e-05
   TIGR00157  33 RpivaNvdqivlvsslvePels.lalldrlLvvaeakniepiivlnk..kdlleeedaekeqleelknlgYkvllvsvkneegleelkeklkkrisvfaGqSGVGKSSLiNlldp 144
                 R+ ++ v q vlv s+       l ll rlL+ + a  +  +  +    ++ ++ e    + +e+l+ l + +ll s+++ +  ee      +   v++G  GVGKS Li +l +
  MMETSP1137-20121227|5802_1  50 RAAITSVMQHVLVRSVGRGAAAiLELLARLLLLLLALLLPWSPSMRSaaMQRIRAEF--LKAAERLNRLSWLPLLESADDGDVEEEASSPRDSPHVVVVGDEGVGKSTLIRALRS 162
                 566666666667766665544314566677666666666554444330033333333..458899999**********99999999999999999***************99987 PP

>> TIGR01166  cbiO: cobalt ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   6.7e-05     0.031      18      77 ..     140     200 ..     132     220 .. 0.79

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 6.7e-05
   TIGR01166  18 gevlallGanGaGkstlllhlnGllrPksGk.vlldGeeldysrkgllelrkkvalvlqdp 77 
                 +  ++++G  G Gkstl++ l  l  P   + v  +G +l     g  +++ +val++ ++
  MMETSP1137-20121227|5802_1 140 SPHVVVVGDEGVGKSTLIRALRSLALPFGVQlVAQEGLPLPSRSAGPSDVQMRVALIVWEA 200
                 67899*****************999998776245678999888888888888888776554 PP

>> TIGR02030  BchI-ChlI: magnesium chelatase ATPase subunit I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   6.5e-05      0.03      28      59 ..     143     176 ..     138     210 .. 0.73

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 6.5e-05
   TIGR02030  28 vlvlGdrGtgkstavralaal.lp.eikavagcp 59 
                 v+v+Gd G gkst +ral +l lp  ++ va+  
  MMETSP1137-20121227|5802_1 143 VVVVGDEGVGKSTLIRALRSLaLPfGVQLVAQEG 176
                 89****************9874553355555443 PP

>> TIGR03925  T7SS_EccC_b: type VII secretion protein EccCb
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   6.6e-05      0.03     357     381 ..     136     160 ..     119     164 .. 0.86

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 6.6e-05
   TIGR03925 357 dfaeephllvlGdsesGktallrai 381
                   +++ph++v+Gd++ Gk++l+ra+
  MMETSP1137-20121227|5802_1 136 SPRDSPHVVVVGDEGVGKSTLIRAL 160
                 57899*****************987 PP

>> TIGR02315  ABC_phnC: phosphonate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00011      0.05      31      53 ..     143     165 ..     137     195 .. 0.89

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 0.00011
   TIGR02315  31 vaviGlsGaGkstllrsinrlve 53 
                 v+v+G  G Gkstl+r++  l  
  MMETSP1137-20121227|5802_1 143 VVVVGDEGVGKSTLIRALRSLAL 165
                 89***************998875 PP

>> TIGR02442  Cob-chelat-sub: cobaltochelatase subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.0   9.9e-05     0.045      28      50 ..     143     165 ..     140     216 .. 0.90

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 9.9e-05
   TIGR02442  28 vlirGekGtaKstaaRaLaallp 50 
                 v++ G+ G++Kst++RaL++l  
  MMETSP1137-20121227|5802_1 143 VVVVGDEGVGKSTLIRALRSLAL 165
                 89*****************9964 PP

>> TIGR03594  GTPase_EngA: ribosome-associated GTPase EngA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   0.0   0.00068      0.31     166     195 ..     131     160 ..      99     163 .. 0.71
   2 ?    0.8   0.0     0.088        40     275     299 ..     214     240 ..     193     280 .. 0.60

  Alignments for each domain:
  == domain 1    score: 7.8 bits;  conditional E-value: 0.00068
   TIGR03594 166 eeeeeeeeepikiaiiGrpNvGKStLvNal 195
                 eee+++ +++ ++ ++G   vGKStL+ al
  MMETSP1137-20121227|5802_1 131 EEEASSPRDSPHVVVVGDEGVGKSTLIRAL 160
                 444444455677888888888888887655 PP

  == domain 2    score: 0.8 bits;  conditional E-value: 0.088
   TIGR03594 275 Dlkiaglileegkalvi..vvNKwDlv 299
                  +++ gl+ e ++++v+  v NK+Dl+
  MMETSP1137-20121227|5802_1 214 AQSLNGLLREGSRPVVMvaVCNKTDLM 240
                 555666666666666552245777776 PP

>> TIGR03156  GTP_HflX: GTP-binding protein HflX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.0      0.01       4.6     183     210 ..     134     161 ..     119     173 .. 0.85
   2 ?    4.1   0.0    0.0087         4     298     347 ..     224     274 ..     205     277 .. 0.78

  Alignments for each domain:
  == domain 1    score: 3.9 bits;  conditional E-value: 0.01
   TIGR03156 183 krkksevptvalvGYTNaGKstllnalt 210
                 + + ++ p+v +vG    GKstl++al 
  MMETSP1137-20121227|5802_1 134 ASSPRDSPHVVVVGDEGVGKSTLIRALR 161
                 45567899****************9996 PP

  == domain 2    score: 4.1 bits;  conditional E-value: 0.0087
   TIGR03156 298 gaeeipvllvlNkidkle..eeeleeleekkeeavlvsAkkgegleeLleai 347
                 g + + ++ v+Nk+d+++   +++e l+++ +  ++vs ++g++++ L e++
  MMETSP1137-20121227|5802_1 224 GSRPVVMVAVCNKTDLMPcpLPQIEDLHKSLP-FIAVSVERGTNVRLLWEQM 274
                 455677999*******9977788888888765.9***********9998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (422 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       273  (0.0665529); expected 82.0 (0.02)
Passed bias filter:                      237  (0.0577767); expected 82.0 (0.02)
Passed Vit filter:                        94  (0.0229157); expected 4.1 (0.001)
Passed Fwd filter:                         9  (0.00219405); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.49u 0.20s 00:00:00.69 Elapsed: 00:00:00.64
# Mc/sec: 870.30
//
Query:       MMETSP1137-20121227|5803_1  [L=183]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (183 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        77  (0.0187713); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.15s 00:00:00.34 Elapsed: 00:00:00.28
# Mc/sec: 832.90
//
Query:       MMETSP1137-20121227|5804_1  [L=456]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   7.3e-133  441.1   0.7   8.4e-133  440.9   0.5    1.0  1  TIGR03676 aRF1/eRF1: peptide chain release factor 1, archaeal and eukaryotic forms
    5.4e-12   43.5   0.4      4e-11   40.6   0.1    2.0  2  TIGR00111 pelota: putative translation factor pelota
     0.0078   14.4   1.0        1.1    7.5   0.0    2.7  3  TIGR00059 L17: ribosomal protein L17


Domain annotation for each model (and alignments):
>> TIGR03676  aRF1/eRF1: peptide chain release factor 1, archaeal and eukaryotic forms
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  440.9   0.5  6.1e-136  8.4e-133       1     403 []      39     442 ..      39     442 .. 0.97

  Alignments for each domain:
  == domain 1    score: 440.9 bits;  conditional E-value: 6.1e-136
   TIGR03676   1 ekyelkklleeLkkkkgrgTeLislyippdkqisdvvkqlreEysqaaNIkskqtrknVqsalesilqrLkllkkipenGlvlfaGavakgggkekmeteviePpepiktylYrcdskFylepLeemleekevyGlivldrkeatigllkGkrievlkeltstvPgKhkkGGQSarRferlieeaaheFlkkvgekaneaflplkekklkGiligGpgptKeeflegdylhhelkkkilelvdvsytdesGlrelvekaedalkelelvkekkllekflkelvkdsglaaYGeeevrkaLelgavdtllisedlekervtlkCescdyeeektvkeeeeekle.kcpkcgselevveeedlieelvelaeesgakveiistdteegeqllkaFgGiaaiLrykv 403
                 e++++kkl+++L+ ++g+gT++isl +pp+ qis  +k+l +E+++a+NIks+++r +V+sa++s++qrLkl++k+p+nGlv+++G++ ++++kek +   +eP +pi+t lY cd+kF++e L+e+le ++ +G+iv+d +    g+l G++ e+l+++++++P+Kh +GGQSa Rf+rl+ e+ h++++kv+e a ++f+++++ ++ Gi+++G++++K++++++d ++ +l  k+l++vdvsy +e+G+++++e +++ l+++++++ekkl++++++++++d+g+++YG +++ kaLe+gav+tl++ edl ++r+tlk  + + e++ + ++++e+ ++    ++g elevve+  l+e++++++++ ga++e++++ ++eg+q++k FgGi++iLrykv
  MMETSP1137-20121227|5804_1  39 EIWKIKKLIKSLEAARGNGTSMISLILPPKSQISMAAKMLADEFGTASNIKSRVNRLSVLSAITSTQQRLKLFTKVPPNGLVIYCGTILTDDNKEKKVNIDFEPFKPINTSLYLCDNKFHTEALSELLESDDKFGFIVMDGNGCLYGTLAGNTREILHKFSVDLPKKHGRGGQSALRFARLRLEKRHNYVRKVAEVAVQMFITNDKVNVAGIVLAGSADFKNDLYQSDNFDGRLSAKVLKTVDVSYGGENGFNQAIELSAESLSNVKFIQEKKLISQYFEQISQDTGKFCYGIDDTLKALEMGAVETLIVYEDLPTMRYTLKNGQTQEEKIIHLTKDQESDASnFTTSDGVELEVVEKLALVEWFASNYKNFGATLEFVTNRSQEGSQFVKGFGGIGGILRYKV 442
                 5799******************************************************************************************************************************************************************************************************************************************************************************************************************************988888888777666655555256667888**************************************************96 PP

>> TIGR00111  pelota: putative translation factor pelota
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.6   0.1   2.9e-14     4e-11     141     303 ..     177     352 ..     137     382 .. 0.73
   2 ?    1.0   0.0     0.033        45     332     351 .]     422     442 ..     386     442 .. 0.80

  Alignments for each domain:
  == domain 1    score: 40.6 bits;  conditional E-value: 2.9e-14
   TIGR00111 141 leegvaevglvrqysveekqkikssipkkk.rt........kkrdekrkefykeiakklee.f...d..dlktiivagPGFakkdlldflkerypelakkavlen..vstggraGinevlkrgvverilaekrlakeievidelLeelakdddkvvYGedevkkaleygaievLLvaDkv 303
                 ++ +    g +   + e   k  +++pkk+ r         + r ekr+++ +++a++  + f   d  ++  i++ag   +k+dl++  +++++     +vl+   vs gg +G+n  +   + ++ l+++++ +e ++i ++ e++++d  k +YG+d+  kale+ga+e+L+v + +
  MMETSP1137-20121227|5804_1 177 MDGNGCLYGTLAGNTREILHKFSVDLPKKHgRGgqsalrfaRLRLEKRHNYVRKVAEVAVQmFitnDkvNVAGIVLAGSADFKNDLYQ--SDNFDGRLSAKVLKTvdVSYGGENGFNQAIE--LSAESLSNVKFIQEKKLISQYFEQISQDTGKFCYGIDDTLKALEMGAVETLIVYEDL 352
                 5555555555555555555556666666653324455555567778999999999554322122224114567999999999999997..566777777777764339**********995..78999************************************************9988 PP

  == domain 2    score: 1.0 bits;  conditional E-value: 0.033
   TIGR00111 332 eaGkq.LesLgGiaglLrfki 351
                 + G q ++  gGi g+Lr+k+
  MMETSP1137-20121227|5804_1 422 QEGSQfVKGFGGIGGILRYKV 442
                 4455525789*********97 PP

>> TIGR00059  L17: ribosomal protein L17
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.7   0.0    0.0058       7.9      40      80 ..      76     116 ..      68     119 .. 0.88
   2 ?   -3.4   0.0       1.9   2.5e+03      63      79 ..     305     321 ..     301     323 .. 0.84
   3 !    7.5   0.0   0.00078       1.1      20      64 ..     343     387 ..     333     410 .. 0.78

  Alignments for each domain:
  == domain 1    score: 4.7 bits;  conditional E-value: 0.0058
   TIGR00059  40 rrvveklitlakvdnlaarrevkaylrnkellkkLfseiap 80 
                 +  ++ + t++   + ++r +v + + +++   kLf++++p
  MMETSP1137-20121227|5804_1  76 KMLADEFGTASNIKSRVNRLSVLSAITSTQQRLKLFTKVPP 116
                 5667888899999999***********************98 PP

  == domain 2    score: -3.4 bits;  conditional E-value: 1.9
   TIGR00059  63 aylrnkellkkLfseia 79 
                 +++++k+l+++ f++i+
  MMETSP1137-20121227|5804_1 305 KFIQEKKLISQYFEQIS 321
                 78999999999999986 PP

  == domain 3    score: 7.5 bits;  conditional E-value: 0.00078
   TIGR00059  20 asallkhekiettkakakelrrvveklitlakvdnlaarrevkay 64 
                 +  l+ +e + t ++ +k+ + + ek+i l+k++++ a    ++ 
  MMETSP1137-20121227|5804_1 343 VETLIVYEDLPTMRYTLKNGQTQEEKIIHLTKDQESDASNFTTSD 387
                 6789****************************9988877655555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (456 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       139  (0.0338859); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.33u 0.16s 00:00:00.49 Elapsed: 00:00:00.53
# Mc/sec: 1135.60
//
Query:       MMETSP1137-20121227|5805_1  [L=109]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (109 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        57  (0.0138957); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.15s 00:00:00.32 Elapsed: 00:00:00.43
# Mc/sec: 334.58
//
Query:       MMETSP1137-20121227|5806_1  [L=670]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (670 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        88  (0.0214529); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.15s 00:00:00.57 Elapsed: 00:00:00.44
# Mc/sec: 2009.83
//
Query:       MMETSP1137-20121227|5807_1  [L=179]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.1e-12   43.4   2.3    8.8e-12   42.9   1.6    1.3  1  TIGR00103 DNA_YbaB_EbfC: DNA-binding protein, YbaB/EbfC family


Domain annotation for each model (and alignments):
>> TIGR00103  DNA_YbaB_EbfC: DNA-binding protein, YbaB/EbfC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.9   1.6   2.1e-15   8.8e-12      10     103 ..      80     175 ..      61     176 .. 0.88

  Alignments for each domain:
  == domain 1    score: 42.9 bits;  conditional E-value: 2.1e-15
   TIGR00103  10 ellkqaqkvqekikklqeelkklevtgksgaglvkveinGekelksveIdpsllddedkealeeliteAlndAvkkvkekike...kvtkglplvpg 103
                 e++k+ ++v +k+++lqeel ++ev+    +g + v++ G + ++sve+ +++l   ++e l+e +++Al++A +k+    ++   ++ + ++l +g
  MMETSP1137-20121227|5807_1  80 EMMKKYSEVGQKVQELQEELTQTEVECSTNEGGIVVKVTGTQVPLSVEVSDEMLA-GGAEKLSEQVAAALKQAHAKSGGYAQQrmaELYDQMGLGAG 175
                 8************************9888888899*******************9.*******************9988777744555556665555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (179 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       251  (0.0611897); expected 82.0 (0.02)
Passed bias filter:                      187  (0.0455875); expected 82.0 (0.02)
Passed Vit filter:                        19  (0.00463189); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.21u 0.16s 00:00:00.37 Elapsed: 00:00:00.37
# Mc/sec: 638.54
//
Query:       MMETSP1137-20121227|5808_1  [L=245]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (245 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       137  (0.0333983); expected 82.0 (0.02)
Passed bias filter:                       96  (0.0234032); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.17s 00:00:00.40 Elapsed: 00:00:00.26
# Mc/sec: 1243.74
//
Query:       MMETSP1137-20121227|5809_1  [L=489]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.7e-14   51.7   0.3    0.00038   18.4   0.0    4.3  4  TIGR01068 thioredoxin: thioredoxin
    3.4e-10   38.0   0.1      0.036   12.2   0.0    4.2  4  TIGR01126 pdi_dom: protein disulfide-isomerase domain
    3.9e-09   34.2   0.0    9.2e-06   23.2   0.0    2.4  2  TIGR00385 dsbE: periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily
    2.6e-05   22.5   0.1       0.84    8.1   0.0    3.6  3  TIGR02196 GlrX_YruB: glutaredoxin-like protein, YruB-family
    5.7e-05   20.6   2.0        2.3    5.5   0.0    4.8  6  TIGR01130 ER_PDI_fam: protein disulfide isomerases
    0.00057   17.2   0.0      0.063   10.6   0.0    2.3  2  TIGR02661 MauD: methylamine dehydrogenase accessory protein MauD
     0.0058   14.9   0.0        1.2    7.5   0.0    2.6  2  TIGR02200 GlrX_actino: glutaredoxin-like protein
  ------ inclusion threshold ------
      0.011   12.2   0.1        1.2    5.5   0.0    2.2  2  TIGR00424 APS_reduc: 5'-adenylylsulfate reductase, thioredoxin-independent


Domain annotation for each model (and alignments):
>> TIGR01068  thioredoxin: thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   5.6e-06    0.0029      16      45 ..     107     136 ..      94     159 .. 0.75
   2 !    9.7   0.0   0.00039       0.2      55      80 ..     173     198 ..     165     211 .. 0.82
   3 !   18.4   0.0   7.4e-07   0.00038      13      41 ..     248     276 ..     238     302 .. 0.76
   4 ?    2.3   0.0     0.079        40      57      77 ..     320     340 ..     316     350 .. 0.83

  Alignments for each domain:
  == domain 1    score: 15.6 bits;  conditional E-value: 5.6e-06
   TIGR01068  16 lvlvDfwAeWCgpCkmlaPvleelakelee 45 
                  v + f A+WC pC+ ++P l e  k+ ++
  MMETSP1137-20121227|5809_1 107 IVGLYFSAHWCPPCRGFTPALVETYKKIKT 136
                 5667799*************9998877654 PP

  == domain 2    score: 9.7 bits;  conditional E-value: 0.00039
   TIGR01068  55 deeqeiaakygirsiPtlllfkngke 80 
                 +++ ++++ky+++ iPtl+++ +   
  MMETSP1137-20121227|5809_1 173 EAKARLSKKYKVQGIPTLVILDESGA 198
                 677899*************9987655 PP

  == domain 3    score: 18.4 bits;  conditional E-value: 7.4e-07
   TIGR01068  13 sdklvlvDfwAeWCgpCkmlaPvleelak 41 
                 + ++v + f A+WC pCk+++Pvl    +
  MMETSP1137-20121227|5809_1 248 DAEVVGLYFSAHWCPPCKAFTPVLGATYE 276
                 3446667899*************987654 PP

  == domain 4    score: 2.3 bits;  conditional E-value: 0.079
   TIGR01068  57 eqeiaakygirsiPtlllfkn 77 
                 +q +++ ++++ iP l+lf  
  MMETSP1137-20121227|5809_1 320 KQMLSKLFEVQGIPRLVLFDA 340
                 56678899**********964 PP

>> TIGR01126  pdi_dom: protein disulfide-isomerase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.9   0.0   0.00018     0.091      15      66 ..     106     157 ..      97     166 .. 0.86
   2 !    7.8   0.0    0.0016      0.83      56      82 ..     171     197 ..     160     212 .. 0.82
   3 !   12.2   0.0   7.1e-05     0.036      13      60 ..     248     295 ..     239     305 .. 0.74
   4 ?    1.2   0.0      0.19        96      60      82 ..     320     342 ..     316     352 .. 0.83

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 0.00018
   TIGR01126  15 kdvlvefyaPWCGhCkklaPeyeklakelkkeeekvkiakvdataekelask 66 
                 k v + f a WC  C+ ++P   +  k++k++ +  +i  v +++++ + ++
  MMETSP1137-20121227|5809_1 106 KIVGLYFSAHWCPPCRGFTPALVETYKKIKTAGKAFEIVFVSSDKDQGAFDE 157
                 56667899***********************999999999999998876655 PP

  == domain 2    score: 7.8 bits;  conditional E-value: 0.0016
   TIGR01126  56 dataekelaskfkvsgfPtlkffkkgk 82 
                 d +a+ +l++k+kv+g Ptl ++++  
  MMETSP1137-20121227|5809_1 171 DREAKARLSKKYKVQGIPTLVILDESG 197
                 567788999***********9998765 PP

  == domain 3    score: 12.2 bits;  conditional E-value: 7.1e-05
   TIGR01126  13 enkdvlvefyaPWCGhCkklaPeyeklakelkkeeekvkiakvdatae 60 
                 + ++v + f a WC  Ck+++P+     +++ ++ +k+ +  v ++ +
  MMETSP1137-20121227|5809_1 248 DAEVVGLYFSAHWCPPCKAFTPVLGATYEKVLAAGKKMAMIFVSSDRD 295
                 556677889*************98777777776666666666666665 PP

  == domain 4    score: 1.2 bits;  conditional E-value: 0.19
   TIGR01126  60 ekelaskfkvsgfPtlkffkkgk 82 
                 ++ l++ f+v+g P l +f++++
  MMETSP1137-20121227|5809_1 320 KQMLSKLFEVQGIPRLVLFDAKS 342
                 5678889***********99877 PP

>> TIGR00385  dsbE: periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.2   0.0   1.8e-08   9.2e-06      23     151 ..      61     200 ..      45     216 .. 0.69
   2 !    8.7   0.0   0.00051      0.26      58      86 ..     244     272 ..     226     343 .. 0.85

  Alignments for each domain:
  == domain 1    score: 23.2 bits;  conditional E-value: 1.8e-08
   TIGR00385  23 aegedikelesaligkpvpaekea....elkekvqlltaevlkkgklvLlnvwasWCptCraehplLkelake....g..lrivgvdykDesqkal.kfLkelGnPyqlv.laDe..kGklaldlGvygaPetflvdgnGvir 151
                  + +  ++l  al++  v ++  +    +l+  +  l+++ + kgk+v l + a WCp+Cr   p L e  k+    g   +iv v   D++q a+ ++ +e+  P+ +v   D   k +l+ ++ v+g+P   ++d++G i 
  MMETSP1137-20121227|5809_1  61 RHSKAQRHLSXALSHSAVATMMSEllgkSLTSASGELSTDDALKGKIVGLYFSAHWCPPCRGFTPALVETYKKiktaGkaFEIVFVSS-DKDQGAFdEYFGEM--PWLAVpFSDReaKARLSKKYKVQGIPTLVILDESGAII 200
                 4567778899999999988877661111444445556668899*******************99999776554111133366666654.55555542567776..77665244541156677799***************996 PP

  == domain 2    score: 8.7 bits;  conditional E-value: 0.00051
   TIGR00385  58 evlkkgklvLlnvwasWCptCraehplLk 86 
                 e+   +++v l + a WCp+C+a  p+L 
  MMETSP1137-20121227|5809_1 244 ELRADAEVVGLYFSAHWCPPCKAFTPVLG 272
                 45556778889999*********999985 PP

>> TIGR02196  GlrX_YruB: glutaredoxin-like protein, YruB-family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   0.0     0.022        11       5      16 ..     112     123 ..     107     154 .. 0.71
   2 !    8.1   0.0    0.0016      0.84      35      58 ..     171     194 ..     169     200 .. 0.88
   3 !    5.6   0.0    0.0097         5       5      17 ..     256     268 ..     251     285 .. 0.81

  Alignments for each domain:
  == domain 1    score: 4.4 bits;  conditional E-value: 0.022
   TIGR02196   5 YttpwCppCkka 16 
                 ++ +wCppC+  
  MMETSP1137-20121227|5809_1 112 FSAHWCPPCRGF 123
                 4789*****854 PP

  == domain 2    score: 8.1 bits;  conditional E-value: 0.0016
   TIGR02196  35 dsaaaeellkklgqrsvPvivige 58 
                 d +a+++l kk++ +++P++vi +
  MMETSP1137-20121227|5809_1 171 DREAKARLSKKYKVQGIPTLVILD 194
                 899******************964 PP

  == domain 3    score: 5.6 bits;  conditional E-value: 0.0097
   TIGR02196   5 YttpwCppCkkak 17 
                 ++ +wCppCk+  
  MMETSP1137-20121227|5809_1 256 FSAHWCPPCKAFT 268
                 4789*****9865 PP

>> TIGR01130  ER_PDI_fam: protein disulfide isomerases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.0     0.024        12     368     393 ..     110     135 ..      99     158 .. 0.63
   2 !    5.5   0.0    0.0045       2.3      62      85 ..     173     196 ..     169     208 .. 0.82
   3 ?    2.5   0.9     0.036        18     368     385 ..     254     271 ..     245     281 .. 0.77
   4 ?   -1.4   0.0      0.52   2.7e+02     425     448 ..     280     303 ..     277     311 .. 0.87
   5 ?   -3.0   0.0       1.6   8.4e+02      65      83 ..     321     339 ..     316     344 .. 0.77
   6 ?    3.0   0.0     0.025        13     244     332 ..     392     485 ..     374     489 .] 0.67

  Alignments for each domain:
  == domain 1    score: 3.1 bits;  conditional E-value: 0.024
   TIGR01130 368 vefYApWCGHCkkLapiYeelaekyk 393
                 + f A WC  C+ ++p+  e  +k k
  MMETSP1137-20121227|5809_1 110 LYFSAHWCPPCRGFTPALVETYKKIK 135
                 45556677777766666555444443 PP

  == domain 2    score: 5.5 bits;  conditional E-value: 0.0045
   TIGR01130  62 teekelaqkygvsGyPtLkifrng 85 
                  +++ l++ky+v+G PtL i+ ++
  MMETSP1137-20121227|5809_1 173 EAKARLSKKYKVQGIPTLVILDES 196
                 567899************998766 PP

  == domain 3    score: 2.5 bits;  conditional E-value: 0.036
   TIGR01130 368 vefYApWCGHCkkLapiY 385
                 + f A WC  Ck+++p+ 
  MMETSP1137-20121227|5809_1 254 LYFSAHWCPPCKAFTPVL 271
                 557799999999999974 PP

  == domain 4    score: -1.4 bits;  conditional E-value: 0.52
   TIGR01130 425 pagkksepvkyegdRtledlvkFi 448
                  agkk  ++ +++dR+ ++++++ 
  MMETSP1137-20121227|5809_1 280 AAGKKMAMIFVSSDRDGQQFKDYF 303
                 6899999**********9999986 PP

  == domain 5    score: -3.0 bits;  conditional E-value: 1.6
   TIGR01130  65 kelaqkygvsGyPtLkifr 83 
                 + l++ ++v+G P L +f 
  MMETSP1137-20121227|5809_1 321 QMLSKLFEVQGIPRLVLFD 339
                 6678889999999998885 PP

  == domain 6    score: 3.0 bits;  conditional E-value: 0.025
   TIGR01130 244 eskkkseellekflevakkfkgk..kvkfavadeeefg...keleelglkaekapavvilsleeskkyaleqe.efssealkefvkdfldgklkp 332
                  s+++++el ++++ +a++ k+   +v f  +++e  +   ++l++lg    ++p+++il+  ++  y ++++ +++ +++++f++++++ +++ 
  MMETSP1137-20121227|5809_1 392 LSSEAQAELVKELTPLAEELKAGeeFVFFVGTSSEGPAaqvRALTKLGAP-MATPQLIILDIPDQGGYYTSSAtKVTGATVRSFIESYKAKTIER 485
                 344568999999*****999876544444333333222000233333333.3499*******99888877777799999*********9988876 PP

>> TIGR02661  MauD: methylamine dehydrogenase accessory protein MauD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.6   0.0   0.00012     0.063      77     174 ..     108     215 ..      97     220 .. 0.72
   2 ?    4.3   0.0     0.011       5.4      57     113 ..     232     293 ..     220     345 .. 0.78

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 0.00012
   TIGR02661  77 tllmftapscpvcdkllpii....ksiara.eeidvvlis.dgapeehrrflkdhelgeiryv...vsaevgmafqvgkipygvlldqeg.virakgltntrehlesl 174
                   l f+a  cp c  + p +    k i +a + +++v++s d  +    +++ + +   + +      a +  +++v  ip  v+ld+ g +i a g     e le l
  MMETSP1137-20121227|5809_1 108 VGLYFSAHWCPPCRGFTPALvetyKKIKTAgKAFEIVFVSsDKDQGAFDEYFGEMPWLAVPFSdreAKARLSKKYKVQGIPTLVILDESGaIITADGREAVSEDLEGL 215
                 5588999999999987774322225565541457888775266777788888887766665542226788999***************99346789999888988876 PP

  == domain 2    score: 4.3 bits;  conditional E-value: 0.011
   TIGR02661  57 lpdfsgepvriggaealgrptllmftapscpvcdkllpii.....ksiaraeeidvvlisdg 113
                 + + +g++  + +  a      l f+a  cp c+ + p++     k +a+ +++ ++++s  
  MMETSP1137-20121227|5809_1 232 VMSADGDTSEVSELRADAEVVGLYFSAHWCPPCKAFTPVLgatyeKVLAAGKKMAMIFVSSD 293
                 66677888888888888888999***************984444456777788888877633 PP

>> TIGR02200  GlrX_actino: glutaredoxin-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.0     0.018       9.3       5      39 ..     112     153 ..     108     159 .. 0.60
   2 !    7.5   0.0    0.0024       1.2       5      50 ..     256     298 ..     252     300 .. 0.86

  Alignments for each domain:
  == domain 1    score: 4.6 bits;  conditional E-value: 0.018
   TIGR02200   5 YatswCgyCaslk.......rtLdkdgaeYevvdiekdeeaa 39 
                 + ++wC+ C+          ++++  g ++e+v +  d++ +
  MMETSP1137-20121227|5809_1 112 FSAHWCPPCRGFTpalvetyKKIKTAGKAFEIVFVSSDKDQG 153
                 4689*****965411111113445567777777776665554 PP

  == domain 2    score: 7.5 bits;  conditional E-value: 0.0024
   TIGR02200   5 YatswCgyCaslkrtLdkdgaeYevvdiekdeeaadyvksvndGnk 50 
                 + ++wC+ C+    +L   ga Ye v     + a  +v+s  dG++
  MMETSP1137-20121227|5809_1 256 FSAHWCPPCKAFTPVL---GATYEKVLAAGKKMAMIFVSSDRDGQQ 298
                 4689******999887...999999999999999999999888886 PP

>> TIGR00424  APS_reduc: 5'-adenylylsulfate reductase, thioredoxin-independent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   0.0    0.0048       2.5     376     421 ..     107     156 ..      74     175 .. 0.85
   2 ?    5.5   0.0    0.0023       1.2     369     413 ..     244     290 ..     237     315 .. 0.81

  Alignments for each domain:
  == domain 1    score: 4.4 bits;  conditional E-value: 0.0048
   TIGR00424 376 lvvly..apwcpfcqameasyvelaekl..agsgvkvakfradgdqkefa 421
                 +v ly  a wcp c+ +  + ve  +k+  ag+   +    +d dq +f 
  MMETSP1137-20121227|5809_1 107 IVGLYfsAHWCPPCRGFTPALVETYKKIktAGKAFEIVFVSSDKDQGAFD 156
                 666765589*************9988753388888899999999999986 PP

  == domain 2    score: 5.5 bits;  conditional E-value: 0.0023
   TIGR00424 369 eerkeawlvvly..apwcpfcqameasyvelaeklagsgvkvakfra 413
                 e r +a +v ly  a wcp c+a+        ek+   g k+a +  
  MMETSP1137-20121227|5809_1 244 ELRADAEVVGLYfsAHWCPPCKAFTPVLGATYEKVLAAGKKMAMIFV 290
                 6788899999997789**********999999**9999999987533 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (489 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       118  (0.0287665); expected 82.0 (0.02)
Passed bias filter:                      113  (0.0275475); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         8  (0.00195027); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.43u 0.19s 00:00:00.62 Elapsed: 00:00:00.59
# Mc/sec: 1093.94
//
Query:       MMETSP1137-20121227|5810_1  [L=707]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   6.8e-114  379.5   1.2   9.6e-113  375.7   0.8    1.9  1  TIGR00955 3a01204: pigment precursor permease
      9e-70  233.4   1.9    1.1e-56  190.1   0.0    2.1  2  TIGR00956 3a01205: pleiotropic drug resistance family protein
    2.9e-30  103.5   0.0    4.7e-30  102.8   0.0    1.2  1  TIGR02857 CydD: thiol reductant ABC exporter, CydD subunit
    4.7e-25   86.2   0.0    1.7e-24   84.4   0.0    1.8  1  TIGR02315 ABC_phnC: phosphonate ABC transporter, ATP-binding protein
    2.9e-24   83.7   0.0    4.7e-24   83.0   0.0    1.3  1  TIGR03864 PQQ_ABC_ATP: ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system
      6e-24   82.4   0.1    1.1e-23   81.5   0.0    1.4  1  TIGR02868 CydC: thiol reductant ABC exporter, CydC subunit
    9.2e-24   82.1   0.0    1.5e-23   81.4   0.0    1.2  1  TIGR00968 3a0106s01: sulfate ABC transporter, ATP-binding protein
    9.9e-24   81.4   0.0    1.5e-23   80.8   0.0    1.2  1  TIGR03375 type_I_sec_LssB: type I secretion system ATPase
      3e-23   80.4   0.0    4.3e-23   79.9   0.0    1.1  1  TIGR01188 drrA: daunorubicin resistance ABC transporter, ATP-binding protein
      3e-23   80.4   0.0    4.7e-23   79.7   0.0    1.2  1  TIGR02982 heterocyst_DevA: ABC exporter ATP-binding subunit, DevA family
    3.2e-23   80.4   0.0      5e-23   79.7   0.0    1.2  1  TIGR02142 modC_ABC: molybdate ABC transporter, ATP-binding protein
    4.1e-23   79.8   0.0    6.2e-23   79.2   0.0    1.2  1  TIGR03608 L_ocin_972_ABC: putative bacteriocin export ABC transporter, lactococcin 972 group
      2e-21   74.5   0.0    3.1e-21   73.9   0.0    1.3  1  TIGR02673 FtsE: cell division ATP-binding protein FtsE
    2.7e-20   70.5   0.0    4.1e-20   69.9   0.0    1.2  1  TIGR03258 PhnT: 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT
    9.8e-20   68.7   0.0    1.4e-19   68.2   0.0    1.1  1  TIGR01187 potA: polyamine ABC transporter, ATP-binding protein
    1.1e-19   68.9   0.0      2e-19   68.0   0.0    1.4  1  TIGR00960 3a0501s02: type II secretory pathway family protein
    1.5e-19   68.2   0.0    2.8e-19   67.3   0.0    1.4  1  TIGR00972 3a0107s01c2: phosphate ABC transporter, ATP-binding protein
    3.9e-19   66.9   0.0    5.8e-19   66.3   0.0    1.1  1  TIGR03265 PhnT2: putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein
    3.9e-19   66.8   0.0    7.5e-19   65.9   0.0    1.4  1  TIGR03410 urea_trans_UrtE: urea ABC transporter, ATP-binding protein UrtE
    7.4e-19   66.1   0.0    1.4e-18   65.2   0.0    1.3  1  TIGR02769 nickel_nikE: nickel import ATP-binding protein NikE
    8.9e-19   65.7   0.0    8.3e-18   62.5   0.0    2.0  1  TIGR02211 LolD_lipo_ex: lipoprotein releasing system, ATP-binding protein
    1.8e-18   64.7   0.1    6.7e-18   62.9   0.1    1.8  1  TIGR02323 CP_lyasePhnK: phosphonate C-P lyase system protein PhnK
    2.8e-18   63.5   0.0    4.4e-18   62.9   0.0    1.2  1  TIGR02203 MsbA_lipidA: lipid A export permease/ATP-binding protein MsbA
    3.2e-18   63.7   0.1    5.1e-18   63.0   0.1    1.2  1  TIGR02314 ABC_MetN: D-methionine ABC transporter, ATP-binding protein
    3.3e-18   63.7   0.2    5.4e-18   63.0   0.1    1.2  1  TIGR03873 F420-0_ABC_ATP: proposed F420-0 ABC transporter, ATP-binding protein
    3.4e-18   63.3   0.0    5.4e-18   62.6   0.0    1.2  1  TIGR01842 type_I_sec_PrtD: type I secretion system ATPase
    5.5e-18   62.9   0.0    9.9e-18   62.1   0.0    1.3  1  TIGR01166 cbiO: cobalt ABC transporter, ATP-binding protein
    1.5e-17   61.0   0.1    2.3e-17   60.3   0.1    1.2  1  TIGR01846 type_I_sec_HlyB: type I secretion system ATPase
    2.6e-17   60.4   0.1    4.1e-17   59.7   0.1    1.2  1  TIGR03797 NHLM_micro_ABC2: NHLM bacteriocin system ABC transporter, ATP-binding protein
      3e-17   59.9   0.2    4.8e-17   59.2   0.1    1.2  1  TIGR03796 NHLM_micro_ABC1: NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein
    3.6e-17   60.0   0.1    5.9e-17   59.3   0.1    1.2  1  TIGR02204 MsbA_rel: ABC transporter, permease/ATP-binding protein
      2e-16   58.1   0.0    3.6e-16   57.3   0.0    1.4  1  TIGR01277 thiQ: thiamine ABC transporter, ATP-binding protein
    2.1e-16   57.4   0.0    2.7e-12   43.8   0.0    2.1  2  TIGR03269 met_CoM_red_A2: methyl coenzyme M reductase system, component A2
    2.4e-16   57.0   0.0    4.8e-16   56.0   0.0    1.4  1  TIGR00958 3a01208: antigen peptide transporter 2
    3.5e-16   57.1   0.0    5.3e-16   56.5   0.0    1.1  1  TIGR01186 proV: glycine betaine/L-proline transport ATP binding subunit
    6.7e-16   56.4   0.0      1e-15   55.8   0.0    1.2  1  TIGR01184 ntrCD: nitrate ABC transporter, ATP-binding proteins C and D
    9.5e-16   55.8   0.1    3.2e-09   34.4   0.0    2.2  2  TIGR02324 CP_lyasePhnL: phosphonate C-P lyase system protein PhnL
    1.3e-15   55.4   0.0    2.5e-15   54.5   0.0    1.4  1  TIGR01189 ccmA: heme ABC exporter, ATP-binding protein CcmA
    1.5e-15   55.1   0.0    6.3e-15   53.1   0.0    1.8  1  TIGR01978 sufC: FeS assembly ATPase SufC
    1.6e-15   54.5   0.0    2.4e-15   53.9   0.0    1.1  1  TIGR01193 bacteriocin_ABC: ABC-type bacteriocin transporter
    1.5e-14   51.5   0.1    2.3e-14   50.9   0.1    1.2  1  TIGR01288 nodI: nodulation ABC transporter NodI
    1.7e-14   51.9   0.0    2.7e-14   51.2   0.0    1.2  1  TIGR03740 galliderm_ABC: lantibiotic protection ABC transporter, ATP-binding subunit
    1.9e-14   51.7   0.0    3.3e-14   50.9   0.0    1.3  1  TIGR03411 urea_trans_UrtD: urea ABC transporter, ATP-binding protein UrtD
    1.5e-13   48.0   0.0    2.6e-13   47.3   0.0    1.3  1  TIGR01192 chvA: glucan exporter ATP-binding protein
    1.6e-13   48.4   0.1    4.2e-13   47.0   0.0    1.7  1  TIGR02770 nickel_nikD: nickel import ATP-binding protein NikD
    3.3e-13   47.6   0.0    4.7e-13   47.1   0.0    1.1  1  TIGR03522 GldA_ABC_ATP: gliding motility-associated ABC transporter ATP-binding subunit GldA
    8.9e-13   46.3   0.2    2.9e-12   44.6   0.1    1.8  1  TIGR03771 anch_rpt_ABC: anchored repeat-type ABC transporter, ATP-binding subunit
    1.1e-11   42.2   0.0    2.2e-11   41.1   0.0    1.4  1  TIGR03415 ABC_choXWV_ATP: choline ABC transporter, ATP-binding protein
    1.2e-11   42.1   0.1    3.2e-10   37.5   0.1    2.1  1  TIGR03005 ectoine_ehuA: ectoine/hydroxyectoine ABC transporter, ATP-binding protein EhuA
    6.8e-11   39.1   0.0    1.3e-06   24.9   0.0    2.0  2  TIGR02633 xylG: D-xylose ABC transporter, ATP-binding protein
    9.4e-11   37.7   0.0    1.3e-10   37.2   0.0    1.1  1  TIGR01271 CFTR_protein: cystic fibrosis transmembrane conductor regulator (CFTR)
    1.6e-10   36.3   0.0    2.3e-10   35.8   0.0    1.1  1  TIGR01257 rim_protein: rim ABC transporter
    2.2e-09   34.3   0.0    1.3e-05   21.8   0.0    2.1  2  TIGR03719 ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family
    0.00011   18.3   0.2      0.019   10.9   0.0    2.1  2  TIGR00630 uvra: excinuclease ABC subunit A
    0.00043   16.8   0.0    0.00094   15.7   0.0    1.5  1  TIGR01194 cyc_pep_trnsptr: cyclic peptide transporter
     0.0005   15.4   0.2     0.0005   15.4   0.1    1.8  1  TIGR00957 MRP_assoc_pro: multi drug resistance-associated protein (MRP)
  ------ inclusion threshold ------
      0.012   11.6   0.1      0.016   11.2   0.1    1.1  1  TIGR00929 VirB4_CagE: type IV secretion/conjugal transfer ATPase, VirB4 family
      0.019   12.5   0.1      0.038   11.5   0.0    1.5  1  TIGR02322 phosphon_PhnN: phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN
      0.034   11.5   0.2      0.065   10.6   0.1    1.4  1  TIGR03880 KaiC_arch_3: KaiC domain protein, AF_0351 family
      0.036   11.8   0.1      0.063   11.0   0.1    1.3  1  TIGR02237 recomb_radB: DNA repair and recombination protein RadB
      0.042   11.5   0.0      0.079   10.6   0.0    1.3  1  TIGR00231 small_GTP: small GTP-binding protein domain
      0.051   11.4   0.0      0.084   10.7   0.0    1.3  1  TIGR00176 mobB: molybdopterin-guanine dinucleotide biosynthesis protein B


Domain annotation for each model (and alignments):
>> TIGR00955  3a01204: pigment precursor permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  375.7   0.8  1.4e-114  9.6e-113      41     613 ..      85     631 ..      62     634 .. 0.87

  Alignments for each domain:
  == domain 1    score: 375.7 bits;  conditional E-value: 1.4e-114
   TIGR00955  41 lknvsGvaksGellAvlGsSGaGKtTLlnalafrsekglkvsgdvllnGekveakemraisayvqqddlfiptltvrehLmfsahlrlkrrltkkekrerveevleelgLrkcadtrigvpg..rvkglSgGerkRlalaselltdPilLfcDEPTsGLDsfsaasvvkvLkklaqk.gktviltiHQPsselfelfdkiillaeGrvvylGspeeavkffselglpcPenynpadFvlkvlavepgseeesretiekicdaeaksklsreveentnlasgkekklvkdseneekikykasfltqflvllkRsllsvlrdplllkvrll.qvivvavligliylgqeltqkgvqningalFllltemtFqtvfavinvftaelpvflREtasglYrlsaYylak.tlaelPlliilpllflsivYwmiglksgalkfltalllvvlvanvatsfglllscafestslalsvappvvipfllfgGfflnvdsvPvyfkwlsylSwfrYanEallinqwsdvkeielleantteecpssgeeiLeelsfeaadl.aldllilvvlilvfrllaylalriri 613
                 l   sG +k G + Av+G+SG+GKtTLlnal+ r + + ++       G++   k ++++ a+v+qdd+ ++ lt++++L+fsa+lr++++  +++++++v+++++ lgL+ ca+t++g +   + +g+SgGerkRl +a+elltdP lLfcDEPTsGLDsf+a+ v++ L++l+++ g tvi++iHQP s++f+ f++++ll +G + y+G ++ a+  f ++g+pcP+ yn +d++l++l +++ s e++ + i k     + +  s +                + ++++ + +y+as+l q+ +ll R++l +   p+l +  ll   ++ +vl+gl +++++ ++k +  +  alF++l   +F  +++++ +++  + ++++E   g++rlsa+++ + +l  lP l+  +l+f+ ivYwm+gl+  + +f+  l +v l+ +v+ s+g+l+s a+  +s   +va +++    lf G+f+  +  P  + w  y+  + Y+     +  +++ k+ +      ++++ +++    ++l++ ++dl +l ++ilv++++ fr  a+l+lr++ 
  MMETSP1137-20121227|5810_1  85 LLPCSGGVKAGSITAVMGASGSGKTTLLNALSRRGPCEGQI--RYGQSGQEWS-KALKRRVAFVEQDDVCFGGLTIKQSLIFSAELRMPADADARTREKKVDDLISILGLSRCANTVVGNASavESRGVSGGERKRLCIATELLTDPALLFCDEPTSGLDSFTAQVVIERLRDLTKQiGITVICSIHQPNSQVFSAFERLLLLHKGSILYHGVATGAAAAFGSIGHPCPAGYNHPDWLLETLVQNKVSDEQQATLIGKHS--GTWPPFSAKPG--------------ARENDVLSDRYSASWLRQTSILLRRAWLLT--RPTLWSNDLLcLYVINGVLTGLTFFQIGYEEKDISARLTALFISLVVWVFFPLINSLALIPMGMTMLRKELSAGCFRLSAWFVVHtSLGMLPELL-WSLVFTPIVYWMTGLTDRFGNFVGHLGVVYLTILVSHSLGILVSQACGAKSG--TVAIILISFSFLFTGVFVPLEDTP--LPWAAYINPLYYSLNLGGALAFAEGKSYA------DGTISRDEALSDSSLDLAKDDLaWLAFVILVAVAVAFRGGAFLLLRRKL 631
                 55689*****************************9998888..5678999998.99***************************************************************87622469***********************************************96559***************************************************************988777777655554432..22222222222..............222233445799***************955..56666555551567779***************************************************************998752699999865.69*********************************************99874..555666677789************..99**********98755555566555544......23344444444467889999999**********************9975 PP

>> TIGR00956  3a01205: pleiotropic drug resistance family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  190.1   0.0   1.6e-58   1.1e-56     761    1021 ..      71     323 ..      34     334 .. 0.86
   2 !   41.6   1.1   1.1e-13   7.2e-12     393     603 ..     360     566 ..     348     577 .. 0.84

  Alignments for each domain:
  == domain 1    score: 190.1 bits;  conditional E-value: 1.6e-58
   TIGR00956  761 ewrdltyevkikkekrvlLdevdGwvkPGkltALmGasGAGkttLlnvLaeRvttGvitegdrl.vngrkldssFqRsiGYvqqqDlHletstvreaLrfsAylRqpkevskkekneyveevikllelesyadAvvGvpGe....GLnveqRkrltigveLvAkPklllFlDePtsGLDsqtawsivkllrklada.GqailCtiHqPsailleeFDrLLllqkGGktvYfGdlGensktlieYFekhGaekcpeeanPAewmLevi 1021
                   wrdl+ +++   ++r lL   +G vk G++tA+mGasG GkttLln+L+ R   G  ++ +r    g++  ++ +R++ +v+q+D+     t++ +L+fsA lR p++   + +++ v+++i++l+l + a+ vvG +      G++   Rkrl i+ eL   P  llF DePtsGLDs ta ++++ lr l+++ G +++C iHqP   ++ +F+rLLll+kG  ++Y G     +      F + G ++cp+ +n  +w+Le  
  MMETSP1137-20121227|5810_1   71 DWRDLSVTIN---GTRALL-PCSGGVKAGSITAVMGASGSGKTTLLNALSRR---GPCEGQIRYgQSGQEWSKALKRRVAFVEQDDVCFGGLTIKQSLIFSAELRMPADADARTREKKVDDLISILGLSRCANTVVGNASAvesrGVSGGERKRLCIATELLTDP-ALLFCDEPTSGLDSFTAQVVIERLRDLTKQiGITVICSIHQPNSQVFSAFERLLLLHKG-SILYHGVATGAA----AAFGSIG-HPCPAGYNHPDWLLETL 323 
                  5787765543...456666.58999***************************...666655554246999*******************************************************************87533345********************.899***********************98755***************************9.899999543333....3477777.67888888888888865 PP

  == domain 2    score: 41.6 bits;  conditional E-value: 1.1e-13
   TIGR00956 393 kskytvsfsqqvkyilaRellrlkgdasvtlikvvgniimalilssvfynlekntsdfyvrggalffallfnafsslleiasly.earpivekhrkyalyhPsadalasilselPvkliesvvfniilyflvnlrreagrFffylLilflatlvmshlFrsigavtktlseAmtlaallllalslytgfviprkeilkWskWiayvnPlaya 603
                 + +y+ s+ +q  ++l+R +l+  + +       +  +i +++++  f+++  +++d+  r +alf +l++  f  l + + l+    ++++k+ +   ++ sa  +  + +++  +l+ s+vf+ i+y++++l    g+F  +l ++ l+ lv  +l  +++ ++ +  +  t+a +l+   +l+tg  +p ++ +  + W+ay+nPl y 
  MMETSP1137-20121227|5810_1 360 SDRYSASWLRQTSILLRRAWLLT-RPTLWSNDLLCLYVINGVLTGLTFFQIGYEEKDISARLTALFISLVVWVFFPLINSLALIpMGMTMLRKELSAGCFRLSAWFVVHTSLGMLPELLWSLVFTPIVYWMTGLTDRFGNFVGHLGVVYLTILVSHSLGILVSQACGA--KSGTVAIILISFSFLFTGVFVPLEDTP--LPWAAYINPLYYS 566
                 568999*****999998888765.556677777888999**********************************99999877777256899999999999999996665555555558999*************************99999988887787777777764..455666667767789*********987..68********997 PP

>> TIGR02857  CydD: thiol reductant ABC exporter, CydD subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.8   0.0   7.1e-32   4.7e-30     310     518 ..      58     271 ..      28     279 .. 0.86

  Alignments for each domain:
  == domain 1    score: 102.8 bits;  conditional E-value: 7.1e-32
   TIGR02857 310 ekapltaaassslelenvsvayegrkpalkevsltvepgelvalvGaSGaGKstllklllgfvepteGailvngaelaeldadswrkqiawvpQkPllfeg.tvaenirlarkdaseaevkealeragldelvkal..pqgleteiGer....gagLSgGqrqRlaLArallrdapllllDEPtahLDaeteaevlealrelae..grtvllvaHrla 518
                 ++ ++++++  s+  +++sv+ +g++ al + s  v++g+++a++GaSG+GK+tll++l++   p eG+i+  g+  +e++++ +++++a+v Q  + f g t+++ + ++ +    a+ ++  ++ ++d+l++ l   +  +t +G++    ++g+SgG+r+Rl +A  ll d  ll  DEPt+ LD+ t++ v+e+lr+l++  g tv+   H+++
  MMETSP1137-20121227|5810_1  58 GSVSIAKEPGLSVDWRDLSVTINGTR-ALLPCSGGVKAGSITAVMGASGSGKTTLLNALSRRG-PCEGQIRY-GQSGQEWSKA-LKRRVAFVEQDDVCFGGlTIKQSLIFSAELRMPADADARTREKKVDDLISILglSRCANTVVGNAsaveSRGVSGGERKRLCIATELLTDPALLFCDEPTSGLDSFTAQVVIERLRDLTKqiGITVICSIHQPN 271
                 445556666669999***********.**********************************98.8******6.5557888855.99***********998779*******99999999999999999999999865116789999*9962222579**********************************************9523677777788876 PP

>> TIGR02315  ABC_phnC: phosphonate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.4   0.0   2.6e-26   1.7e-24      10     231 ..      78     296 ..      70     302 .. 0.83

  Alignments for each domain:
  == domain 1    score: 84.4 bits;  conditional E-value: 2.6e-26
   TIGR02315  10 vypngkqalknvnleikkGelvaviGlsGaGkstllrsinrlveissgsillegkevtklkkkelrklrkkigmifqeynlierltvlenvLsgrlgakstlksllglfseedkekAlelLervg...laelaakradqLsGGqqqRvaiaRalaqqpklilaDEPiasLDpksskqvmdllkrinkekgitvivnlHqvdl.akkyadrivglkageivfdgass 231
                 + + g++al   +  +k G ++av+G sG+Gk+tll +++r   + +g+i        +  ++  + l+++++++ q+      lt+ + ++ ++  ++++ +   ++ ++ d  + +  L+r     + +  a  +  +sGG+++R+ ia  l+ +p+l+++DEP++ LD  +++ v++ l++++k+ gitvi+++Hq +  + +  +r++ l++g+i+++g ++
  MMETSP1137-20121227|5810_1  78 TIN-GTRALLPCSGGVKAGSITAVMGASGSGKTTLLNALSR-RGPCEGQIRYG-----QSGQEWSKALKRRVAFVEQDDVCFGGLTIKQSLIFSAELRMPADADARTREKKVDDLISILGLSRCAntvVGNASAVESRGVSGGERKRLCIATELLTDPALLFCDEPTSGLDSFTAQVVIERLRDLTKQIGITVICSIHQPNSqVFSAFERLLLLHKGSILYHGVAT 296
                 555.778888888899***********************99.68999999864.....34556677899*****************99998877666666666666666777777666666665322155666677888***********************************************************97641456669************99875 PP

>> TIGR03864  PQQ_ABC_ATP: ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.0   0.0   7.1e-26   4.7e-24       6     219 ..      74     298 ..      69     306 .. 0.84

  Alignments for each domain:
  == domain 1    score: 83.0 bits;  conditional E-value: 7.1e-26
   TIGR03864   6 glsfaygkrralddvsltvakgefvaLLGpnGaGkstLfslltrLyeakegeikvaGldlrrapkealarlGvvfqqstlDldlsveqnlryhaaLhGlsraeaeer...ieealarlglaeraeekv........reLnGGhrrrveiarallhePklLLlDeatvGLDiesraalveevrelvreeglsvLWathlvde..veaedrlvvlhkGkvlaqGaaael 219
                 +ls +    ral   s  v+ g+++a++G  G+Gk+tL++ l+r     eg+i+  G++ ++ +k+  +r+  v q+      l+++q l + a+L+  + a+a++r   ++++++ lgl+  a++ v        r ++GG+r+r+ ia  ll +P+lL  De+t GLD  + + ++e +r+l+++ g++v+ + h  +    +a +rl++lhkG +l +G+a+  
  MMETSP1137-20121227|5810_1  74 DLSVTINGTRALLPCSGGVKAGSITAVMGASGSGKTTLLNALSRR-GPCEGQIR-YGQSGQEWSKALKRRVAFVEQDDVCFGGLTIKQSLIFSAELRMPADADARTRekkVDDLISILGLSRCANTVVgnasavesRGVSGGERKRLCIATELLTDPALLFCDEPTSGLDSFTAQVVIERLRDLTKQIGITVICSIHQPNSqvFSAFERLLLLHKGSILYHGVATGA 298
                 566666677888888999*************************96.5679***9.69999999999999***************************9888888765522277888888998766554422222233789**********************************************************8653226899***************98755 PP

>> TIGR02868  CydC: thiol reductant ABC exporter, CydC subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.5   0.0   1.6e-25   1.1e-23     332     524 ..      67     264 ..      39     270 .. 0.79

  Alignments for each domain:
  == domain 1    score: 81.5 bits;  conditional E-value: 1.6e-25
   TIGR02868 332 kptlelrdlsvsypgaeevlkgvsldlepGervavvGasGaGKstLlallaglldplkGevtldgvsvaslsesevrrvvsvlaqdaHlFdt.tvreNlrlarpdatdeellaaLervgLadwlra..LpdGldtklgeggar....lSGGerqRlalARaLladapvllLDEPtehLDaeteeelledLlaaeegrt..vv 524
                   ++  rdlsv  +g  ++l   s  +++G+ +av+GasG+GK+tLl++l +   p +G++   g s ++  +++++r+v++++qd   F   t+++ l + ++    +++ a  ++ +  d++    L   ++t++g+  a     +SGGer+Rl +A  Ll+d  +l  DEPt +LD  t++ ++e L++ +++    v+
  MMETSP1137-20121227|5810_1  67 GLSVDWRDLSVTINGT-RALLPCSGGVKAGSITAVMGASGSGKTTLLNALSRRG-PCEGQIRY-GQSGQEW-SKALKRRVAFVEQDDVCFGGlTIKQSLIFSAELRMPADADARTREKKVDDLISIlgLSRCANTVVGNASAVesrgVSGGERKRLCIATELLTDPALLFCDEPTSGLDSFTAQVVIERLRDLTKQIGitVI 264
                 3445668999999998.56889999**************************965.699***95.5577776.567***************755*********99987777777777777777766533899999***99765433449******************************************987765542144 PP

>> TIGR00968  3a0106s01: sulfate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.4   0.0   2.3e-25   1.5e-23      22     215 ..      91     295 ..      74     301 .. 0.84

  Alignments for each domain:
  == domain 1    score: 81.4 bits;  conditional E-value: 2.3e-25
   TIGR00968  22 evktGslvallGpsGsGkstllrviaGlekpdsGrilleGrdvtrvkvrdreiGfvfqhyalfkhltvrdniafGleir...kkdkakikakveellelvqleklgdry........psqlsGGqrqrvalaralavepqvllldepfgaldakvrkelrawlrklhdevkvttvfvthdq.eealevadrivvlekGkieqvgsa 215
                  vk Gs++a++G sGsGk+tll +++    p +G+i+         k+ +r++ fv q+   f  lt+++ + f  e+r     d+ +  +kv++l+++++l++ ++             +sGG+r+r+ +a  l  +p +l+ dep + ld+   + + + lr l +++ +t +   h+  ++     +r+ +l+kG i   g a
  MMETSP1137-20121227|5810_1  91 GVKAGSITAVMGASGSGKTTLLNALSR-RGPCEGQIRYGQSGQEWSKALKRRVAFVEQDDVCFGGLTIKQSLIFSAELRmpaDADARTREKKVDDLISILGLSRCANTVvgnasaveSRGVSGGERKRLCIATELLTDPALLFCDEPTSGLDSFTAQVVIERLRDLTKQIGITVICSIHQPnSQVFSAFERLLLLHKGSILYHGVA 295
                 699********************9986.67999****977777778899******************************4433445556689***********9988652211111134589******************************************************99986156677889********99876655 PP

>> TIGR03375  type_I_sec_LssB: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.8   0.0   2.3e-25   1.5e-23     480     683 ..      82     293 ..      70     301 .. 0.87

  Alignments for each domain:
  == domain 1    score: 80.8 bits;  conditional E-value: 2.3e-25
   TIGR03375 480 kaaLknvslkikpGekvaiiGriGsGKstllklllglyepteGsvlldgvdirqidpadlrrnigyvpqdvtLfyG.tlrdNialgap.........aaedeellraaelaGvtefvkkhpkGldlqigerGesLSgGQrqavalaRallkdppillLDEPtsalDnsseekllerLkella..dkTlvlvtHr..tslLelvdriivldkGrivadG 683
                 + aL   s  +k+G+  a++G  GsGK+tll+ l++   p eG++ + +    q   + l+r++++v+qd + f G t+++ + ++a+          ++++++   +++ G+++ +++   G    ++ rG  +SgG r+ + +a  ll+dp++l+ DEPts lD+ + + ++erL++l++  + T++ + H+  +++ +  +r+++l kG i+  G
  MMETSP1137-20121227|5810_1  82 TRALLPCSGGVKAGSITAVMGASGSGKTTLLNALSR-RGPCEGQIRYGQS--GQEWSKALKRRVAFVEQDDVCFGGlTIKQSLIFSAElrmpadadaRTREKKVDDLISILGLSRCANT-VVGNASAVESRG--VSGGERKRLCIATELLTDPALLFCDEPTSGLDSFTAQVVIERLRDLTKqiGITVICSIHQpnSQVFSAFERLLLLHKGSILYHG 293
                 56777777889*********************9887.6899*****9865..45556789***************989*****998764444444445678889999999***998876.579999999888..9*********************************************998899*******833589***************9888 PP

>> TIGR01188  drrA: daunorubicin resistance ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.9   0.0   6.5e-25   4.3e-23      12     207 ..      88     294 ..      78     306 .. 0.85

  Alignments for each domain:
  == domain 1    score: 79.9 bits;  conditional E-value: 6.5e-25
   TIGR01188  12 vnlkveegevfglLGPnGAGKtttikmLttllkPdsGtarvaGyDvvrepdevRrsigvvpqkasvdedLtarenlellgely...glpkkeaeeraeellelvelkeaadkkvkt........ysgGmrrrlelaasliaqPevlfLDEPtiGLDprtrraiwdlieelkke.gvtilltthyle.eadkladrvaiidkGkiiaedt 207
                  +  v++g++ +++G  G GKtt+++ L+    P +G+ r  G    + ++ ++r+++ v q+      Lt ++ l + +el    +   +++e+++++l+ ++ l   a+  v++         sgG r+rl +a+ l+++P++lf DEPt+GLD+ t++++ + +++l k+ g+t++ + h+ + ++ +  +r+ +++kG i+ ++ 
  MMETSP1137-20121227|5810_1  88 CSGGVKAGSITAVMGASGSGKTTLLNALSR-RGPCEGQIR-YGQSGQEWSKALKRRVAFVEQDDVCFGGLTIKQSLIFSAELRmpaDADARTREKKVDDLISILGLSRCANTVVGNasavesrgVSGGERKRLCIATELLTDPALLFCDEPTSGLDSFTAQVVIERLRDLTKQiGITVICSIHQPNsQVFSAFERLLLLHKGSILYHGV 294
                 555799*********************997.589***988.68888888999*****************************963336777889999************999988652222222378*********************************************999*****999986525666779999999999987765 PP

>> TIGR02982  heterocyst_DevA: ABC exporter ATP-binding subunit, DevA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.7   0.0   7.1e-25   4.7e-23      28     219 ..      92     289 ..      81     290 .. 0.88

  Alignments for each domain:
  == domain 1    score: 79.7 bits;  conditional E-value: 7.1e-25
   TIGR02982  28 iepgeiviltGpsGsGkttlltligglrsvqeGelkvlgkelkgasekelvqvrrkiGyifqahnllesltaeqnvrmalelkek..lsakeakakaeelleavglee........rldykpedlsgGqkqrvaiaralvarPklvladePtaaldkksgrevvellqklareqgttillvthd..nrildvadrivkmedGkl 219
                 +++g i  + G+sGsGkttll+ ++  r   eG+++ +g++     ++  ++++r++ ++ q    +  lt +q + +++el+      a+++++k+++l++ +gl               ++ +sgG ++r+ ia  l + P l++ dePt+ ld+ +++ v+e l++l+++ g t++   h   ++++   +r++ + +G++
  MMETSP1137-20121227|5810_1  92 VKAGSITAVMGASGSGKTTLLNALS-RRGPCEGQIR-YGQS----GQEWSKALKRRVAFVEQDDVCFGGLTIKQSLIFSAELRMPadADARTREKKVDDLISILGLSRcantvvgnASAVESRGVSGGERKRLCIATELLTDPALLFCDEPTSGLDSFTAQVVIERLRDLTKQIGITVICSIHQpnSQVFSAFERLLLLHKGSI 289
                 88999*****************986.6999*****9.4554....455566899***************************98651256778889999********998888888767778999*******************************************************9999622578999999999999876 PP

>> TIGR02142  modC_ABC: molybdate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.7   0.0   7.6e-25     5e-23      20     214 ..      92     293 ..      77     302 .. 0.82

  Alignments for each domain:
  == domain 1    score: 79.7 bits;  conditional E-value: 7.6e-25
   TIGR02142  20 lpgkgvtalFGrsGsGktslirliaGLtrpdegeivldgevlqdsrkkiilppekRrvgyvFqeArLFpHlsvrenLrYGlk.....raraeerriseekvielLgiehLleRlpgk........LsGGekqRvaigRAlLssPeLLlmDePLaaLDekrkkeilPyLerlsaelkiPilyvsHsld.evarladrvvvledGrvkaag 214
                 +++  +ta+ G+sGsGkt+l+++++    p eg+i    +  q+ +k     + kRrv++v q+   F  l++++ L +  +     +a+a++r+ + + +i++Lg++   +  +g+        +sGGe++R  i+  lL++P LL  DeP + LD+   + ++  L+ l++++ i ++   H+ +  v    +r+++l++G +  +g
  MMETSP1137-20121227|5810_1  92 VKAGSITAVMGASGSGKTTLLNALSR-RGPCEGQIRYG-QSGQEWSK-----ALKRRVAFVEQDDVCFGGLTIKQSLIFSAElrmpaDADARTREKKVDDLISILGLSRCANTVVGNasavesrgVSGGERKRLCIATELLTDPALLFCDEPTSGLDSFTAQVVIERLRDLTKQIGITVICSIHQPNsQVFSAFERLLLLHKGSILYHG 293
                 67779******************995.67999999864.33344444.....679************************9862222255666777788999*****998776655432222223389******************************************************9999852788999*********987666 PP

>> TIGR03608  L_ocin_972_ABC: putative bacteriocin export ABC transporter, lactococcin 972 group
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.2   0.0   9.3e-25   6.2e-23       9     195 ..      80     271 ..      73     284 .. 0.80

  Alignments for each domain:
  == domain 1    score: 79.2 bits;  conditional E-value: 9.3e-25
   TIGR03608   9 kdkeilkklslkiekGelvaivGesGsGKstlLnilgllekkdsgkvilegkekaklkskkaskllreklgylFqnfaLlenetveenlelalklkk...kskkekekkkkevlekvglekklkkkiye........lsgGekqRvalarillkeselilADEPtgsLDkknreevlellkelkee.gktiiivtHdpe 195
                 +  + l  +s  +++G+++a++G sGsGK+tlLn l++    + g++ + ++       ++ sk l+ +++++ q+       t+++ l  + +l+       +++ekk+ +++  +gl+++ ++ + +        +sgGe++R+ +a  ll+++ l++ DEPt+ LD+ + ++v+e l++l+++ g t+i+  H+p+
  MMETSP1137-20121227|5810_1  80 NGTRALLPCSGGVKAGSITAVMGASGSGKTTLLNALSRRGPCE-GQIRYGQSG------QEWSKALKRRVAFVEQDDVCFGGLTIKQSLIFSAELRMpadADARTREKKVDDLISILGLSRCANTVVGNasavesrgVSGGERKRLCIATELLTDPALLFCDEPTSGLDSFTAQVVIERLRDLTKQiGITVICSIHQPN 271
                 55556666677799***********************987665.999997666......6778888999******************9987765543111345567777888899999999988876432222234489*******************************************98775899999999864 PP

>> TIGR02673  FtsE: cell division ATP-binding protein FtsE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.9   0.0   4.7e-23   3.1e-21      14     211 ..      81     285 ..      70     288 .. 0.80

  Alignments for each domain:
  == domain 1    score: 73.9 bits;  conditional E-value: 4.7e-23
   TIGR02673  14 gveaLkdvslkiekgeflfltGasGaGkttllklllgaekpsrGevevagedvarlrerelpllRrkigvvfqDfkllkdrtvlenvalalevrg...kkeeeiqkrveevlelvgledkakal........peelsgGeqqRvaiaRaivnkPelllaDePtGnlDdelserildllkelnkr.Gttvivathdeel.vervkkrvlele 211
                 g++aL  +s  +++g+++ ++GasG+Gkttll+ l     p +G+++  g++ ++       +l+r+++ v qD   +   t+ + + ++ e+r    +++++ +k+v+++++ +gl+  a+++        ++ +sgGe++R  ia  ++++P+ll  DePt  lD+ +++ +++ l++l+k+ G+tvi + h+ +  v +  +r+l l+
  MMETSP1137-20121227|5810_1  81 GTRALLPCSGGVKAGSITAVMGASGSGKTTLLNALSR-RGPCEGQIRY-GQSGQEW----SKALKRRVAFVEQDDVCFGGLTIKQSLIFSAELRMpadADARTREKKVDDLISILGLSRCANTVvgnasaveSRGVSGGERKRLCIATELLTDPALLFCDEPTSGLDSFTAQVVIERLRDLTKQiGITVICSIHQPNSqVFSAFERLLLLH 285
                 677888899999*********************9976.6799****96.4444443....4579***********************99988875222567778899**********9988765222221114569****************************************999986544*********86430333345555555 PP

>> TIGR03258  PhnT: 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.9   0.0   6.2e-22   4.1e-20      12     224 ..      73     295 ..      64     301 .. 0.84

  Alignments for each domain:
  == domain 1    score: 69.9 bits;  conditional E-value: 6.2e-22
   TIGR03258  12 eslrvaygarvvlddlsleieaGellallGksGsGkttllravaGfvkadGGrllvadrdlthlppykrnlallvqnyalfphlkveenvafGlrarkqskali...aervadalklvqlsdaaarl........paqlsGGqqqrvalaralvvrpdvllldeplsaldaqlrasvveelkalhrelpeltvlyvthdrdeal.vladkillmkeGslialGet 224
                  +l+v+ ++   l + s  ++aG + a++G sGsGkttll a++    +  G++  ++         kr +a++ q+   f  l++++ + f    r  ++a+    +++v d + +++ls  a+ +           +sGG ++r+ +a  l  +p +l+ dep s ld+   + v e l+ l +++  +tv++  h+ +  +    +++ll+++Gs++ +G +
  MMETSP1137-20121227|5810_1  73 RDLSVTINGTRALLPCSGGVKAGSITAVMGASGSGKTTLLNALSRR-GPCEGQIRYGQSGQEWSKALKRRVAFVEQDDVCFGGLTIKQSLIFSAELRMPADADArtrEKKVDDLISILGLSRCANTVvgnasaveSRGVSGGERKRLCIATELLTDPALLFCDEPTSGLDSFTAQVVIERLRDLTKQI-GITVICSIHQPNSQVfSAFERLLLLHKGSILYHGVA 295
                 4799999***********************************9865.466699***************************************87666666666511235688888899988665543111111116679*********************************************9998.599***99987665505569************9965 PP

>> TIGR01187  potA: polyamine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.2   0.0   2.1e-21   1.4e-19       1     181 [.     100     291 ..     100     297 .. 0.86

  Alignments for each domain:
  == domain 1    score: 68.2 bits;  conditional E-value: 2.1e-21
   TIGR01187   1 lLGpsGsGkttlLrllaGleeldsGkilldgedvtevpaekrsvnvvfqsyaLfPhmtveenvafg..Lkmr.kvpkaeikervkeaLelvqleefakr........kpsqlsGGqrqrvalaravvkkPkiLLlDeplsaLDkkLrdqmqlelkalqeklGitvvlvthDq.eealtmsdriavlrkGkiaq 181
                 ++G+sGsGkttlL  l+    + +G+i  ++       a kr v  v q+   f  +t+++ + f+  L+m    ++ +++++v +++++  l+  a+         +   +sGG r+r+ +a  +   P +L+ Dep s LD    + + + l++l +++Gitv+   h   +  ++  +r+ +l+kG i+ 
  MMETSP1137-20121227|5810_1 100 VMGASGSGKTTLLNALSR-RGPCEGQIRYGQSGQEWSKALKRRVAFVEQDDVCFGGLTIKQSLIFSaeLRMPaDADARTREKKVDDLISILGLSRCANTvvgnasavESRGVSGGERKRLCIATELLTDPALLFCDEPTSGLDSFTAQVVIERLRDLTKQIGITVICSIHQPnSQVFSAFERLLLLHKGSILY 291
                 58*************985.7899*********9999****************************9744777525677889999*****999998877651111111145679*********************************999999*******************86156677789********9976 PP

>> TIGR00960  3a0501s02: type II secretory pathway family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.0   0.0   3.1e-21     2e-19      18     215 ..      84     288 ..      71     289 .. 0.80

  Alignments for each domain:
  == domain 1    score: 68.0 bits;  conditional E-value: 3.1e-21
   TIGR00960  18 aldnvtvkiekGelvflvGhsGaGkstllklilgiekpsaGkirvsgqdltklrdrevpflrrqiGivfqdfkllsdrtvydnvalalri...iGvkgreieervsaalekvGlkdkakal........PvqlsgGeqqrvaiaravvnkPallladePtgnlddelsrdilelleev.nraGttvlvathden.lveskrkrvltlskGk 215
                 al   +  ++ G+++ ++G sG+Gk+tll+ ++ +  p +G+ir+ +   ++++      l+r++  v qd   +   t+ + ++++ ++   + + +r  e++v   +  +Gl+  a+++           +sgGe++r++ia  ++ +Pall+ dePt+ ld+ +++ ++e l+++ ++ G+tv+ + h+ n  v s  +r+l l+kG 
  MMETSP1137-20121227|5810_1  84 ALLPCSGGVKAGSITAVMGASGSGKTTLLNALS-RRGPCEGQIRYGQS-GQEWS----KALKRRVAFVEQDDVCFGGLTIKQSLIFSAELrmpADADARTREKKVDDLISILGLSRCANTVvgnasaveSRGVSGGERKRLCIATELLTDPALLFCDEPTSGLDSFTAQVVIERLRDLtKQIGITVICSIHQPNsQVFSAFERLLLLHKGS 288
                 56666777999*******************986.5689******8533.23333....368888999999**************99866522455667777888999999****9887764222221114569***************************************9998872568*********96525778888999998885 PP

>> TIGR00972  3a0107s01c2: phosphate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.3   0.0   4.3e-21   2.8e-19       3     222 ..      71     290 ..      69     297 .. 0.76

  Alignments for each domain:
  == domain 1    score: 67.3 bits;  conditional E-value: 4.3e-21
   TIGR00972   3 evknlklfygekealkdvnleikknkvtaliGpsGcGkstllrslnrlndlveevrieGkvllegkdiydkkldvvelrkkvGmvfqkpnpfp.msiydnvayg..lrlkgikdkkeldeiveesLkkaal...wde.vkdklkksalsLsGGqqqrlciaralavePevlLlDePtsaLDpiatekieeliqeLkkkytiviv..thnm.qqaarvsdktaffleGelv 222
                 + ++l+++ +  +al   +  +k+ ++ta++G sG+Gk+tll +l r         +eG++ + ++     +   ++l+++v  v q    f   +i + + ++  lr+    d ++ ++ v++ ++  +l    +  v +    ++ ++sGG ++rlcia  l ++P +l  DePts LD+ +++ + e +++L k++ i ++   h+  +q     ++  ++++G+++
  MMETSP1137-20121227|5810_1  71 DWRDLSVTINGTRALLPCSGGVKAGSITAVMGASGSGKTTLLNALSRRG------PCEGQIRYGQSG----QEWSKALKRRVAFVEQDDVCFGgLTIKQSLIFSaeLRMPADADARTREKKVDDLISILGLsrcANTvVGNASAVESRGVSGGERKRLCIATELLTDPALLFCDEPTSGLDSFTAQVVIERLRDLTKQIGITVIcsIHQPnSQVFSAFERLLLLHKGSIL 290
                 56789999999999999999**********************9998865......468999997653....3345789**************889******999444554444555555556555554444111344145555667899*************************************************65555400454313444455666666666665 PP

>> TIGR03265  PhnT2: putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.3   0.0   8.8e-21   5.8e-19      11     215 ..      76     291 ..      68     297 .. 0.84

  Alignments for each domain:
  == domain 1    score: 66.3 bits;  conditional E-value: 8.8e-21
   TIGR03265  11 ekefeaftalkdislsvkkgelvclLGPsGCGkttLLriiaGLekqdaGaillggrditrlppqkrdyGivfqsYaLfPnltvaeniayGLknk...klkreevaerveelLelvglsgseekyPgq........lsGGqqqrvaLaralalsPglLLLDePlsaLDakvrekLreelkklqrklgvttimvthdqee.alslaDrivvmnkgkieq 215
                 + +++ ++al   s  vk+g + +++G sG GkttLL +++    + +G+i  g+       + kr   +v q  + f  lt+++ + +  + +     + + ++++v+ l++++gls  ++   g         +sGG ++r+ +a  l + P lL+ DeP s LD+   + + e l++l +++g+t i   h+ +   +s  +r+  + kg+i  
  MMETSP1137-20121227|5810_1  76 SVTINGTRALLPCSGGVKAGSITAVMGASGSGKTTLLNALSR-RGPCEGQIRYGQSGQEWSKALKRRVAFVEQDDVCFGGLTIKQSLIFSAELRmpaDADARTREKKVDDLISILGLSRCANTVVGNasavesrgVSGGERKRLCIATELLTDPALLFCDEPTSGLDSFTAQVVIERLRDLTKQIGITVICSIHQPNSqVFSAFERLLLLHKGSILY 291
                 5567788899999999***********************996.56889***98887777788899**********************99977651114667778899**********99887765532223333489********************************************************987651456668888888888765 PP

>> TIGR03410  urea_trans_UrtE: urea ABC transporter, ATP-binding protein UrtE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.9   0.0   1.1e-20   7.5e-19       5     216 ..      74     295 ..      70     301 .. 0.77

  Alignments for each domain:
  == domain 1    score: 65.9 bits;  conditional E-value: 1.1e-20
   TIGR03410   5 nlevaYgesevlrdvslevekgevvavlGrngvGkttllkalvgllkvksGeielegeditklkpeervkaGiayvpqGreifpkltveenlelglealkkk...ekkipeeiyelFPvl..........kemlkRrgGdLsGGqqqqlaiaRaLvtePklllLDePteGiqPsiikeiekvikelakekdlaill.veqvldfaleladrylvlerGevvaegek 216
                 +l+v+ + +++l   s  v++g+++av+G  g Gkttll al       +G+i++ ++     + ++  k+ +a+v q    f  lt++  l  ++e +  +   +++ ++++ +l  +l           +  + ++  +sGG ++ l ia  L+t+P ll  DePt G+     + + + +++l+k+ +++++  + q  + + ++ +r+l+l++G+++ +g +
  MMETSP1137-20121227|5810_1  74 DLSVTINGTRALLPCSGGVKAGSITAVMGASGSGKTTLLNALSRR-GPCEGQIRYGQSGQ---EWSKALKRRVAFVEQDDVCFGGLTIKQSLIFSAELRMPAdadARTREKKVDDLISILglsrcantvvGNASAVESRGVSGGERKRLCIATELLTDPALLFCDEPTSGLDSFTAQVVIERLRDLTKQIGITVICsIHQPNSQVFSAFERLLLLHKGSILYHGVA 295
                 56666667777777788899********************99765.5679****977654...4455567789*****************9988877654332334444444555555431111100000334444455689***************************************************9983578888999999***********998865 PP

>> TIGR02769  nickel_nikE: nickel import ATP-binding protein NikE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.2   0.0   2.1e-20   1.4e-18      34     232 ..      92     292 ..      80     308 .. 0.84

  Alignments for each domain:
  == domain 1    score: 65.2 bits;  conditional E-value: 2.1e-20
   TIGR02769  34 leeGetvallGrsGaGkstlarlllGlekPakGevsfrGqdlakldrkqrkafrrdvqlvfqd..sisavnprksvreiigePlrhltsldeserkariaellelvelrs.......evldklPrqlsGGqlqriniaralavePklivldeavsnldlvlqasilellkklkqefGlaylfithd.lrlvqkfaqrvlvldeGqivee 232
                 +++G   a++G sG+Gk+tl   l     P +G++++ G    +  ++  ka++r v +v qd  + + +  ++s+  i +  lr   + d+  r++++ +l+++++l+        +      r +sGG  +r++ia  l  +P l+  de  s ld     +++e l++l ++ G++++   h   + v +  +r+l+l++G i+ +
  MMETSP1137-20121227|5810_1  92 VKAGSITAVMGASGSGKTTLLNAL-SRRGPCEGQIRY-G----QSGQEWSKALKRRVAFVEQDdvCFGGLTIKQSL--IFSAELRMPADADARTREKKVDDLISILGLSRcantvvgNASAVESRGVSGGERKRLCIATELLTDPALLFCDEPTSGLDSFTAQVVIERLRDLTKQIGITVICSIHQpNSQVFSAFERLLLLHKGSILYH 292
                 7899****************8875.6788*******9.4....44678899************5666777776664..78899*************************852221111223345688*****************************************************99988872467888889*********9865 PP

>> TIGR02211  LolD_lipo_ex: lipoprotein releasing system, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.5   0.0   1.3e-19   8.3e-18      28     219 ..      92     289 ..      80     291 .. 0.71

  Alignments for each domain:
  == domain 1    score: 62.5 bits;  conditional E-value: 1.3e-19
   TIGR02211  28 iekgelvaivGssGsGkstllhllggldkptsGevll..kGkelsklssneraklrnkklGfiyqfhhlladftale......nvamPlliskkskkeakerakellekvglekrink...kpse.....lsGGerqrvaiaralvnkPklvladePtgnldkktakkifelllelnkekntallvvth..dlelakkldrvlelkdgkl 219
                 +++g ++a++G+sGsGk+tll  l+    p +G++    +G+e sk  +++ a +   ++         +  +t+ +      ++ mP+       +  +++  +l++ +gl++ +n    ++s+     +sGGer+r  ia  l+++P+l+++dePt+ ld+ ta+ + e l++l k+ +++++   h  ++++   ++r+l l++g++
  MMETSP1137-20121227|5810_1  92 VKAGSITAVMGASGSGKTTLLNALSR-RGPCEGQIRYgqSGQEWSKALKRRVAFVEQDDVC--------FGGLTIKQslifsaELRMPADADA---RTREKKVDDLISILGLSRCANTvvgNASAvesrgVSGGERKRLCIATELLTDPALLFCDEPTSGLDSFTAQVVIERLRDLTKQIGITVICSIHqpNSQVFSAFERLLLLHKGSI 289
                 8899********************86.679****986224555555555555555555554........444444440000004556654433...33444555566666666555441113332223338******************************************************9999334678899999999998876 PP

>> TIGR02323  CP_lyasePhnK: phosphonate C-P lyase system protein PhnK
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.9   0.1     1e-19   6.7e-18      24     221 ..      92     294 ..      70     298 .. 0.77

  Alignments for each domain:
  == domain 1    score: 62.9 bits;  conditional E-value: 1e-19
   TIGR02323  24 lypGevlgivGesGsGkstllkalaarlladaGevtyesrsr..elell.alseaerrlllrtewGl.vhqn...prGlrmevsaGanigerllavgarhyGkiraaakwlekveidaarikpaafsGGmqqrlqiarnlvtrprlvfm.eptGGlvsvqarll..llrglvrelglaviivthlavarlla..qrllvmkqGrvvesGl 221
                 +  G + +++G sGsGk+tll+al+ r  + +G+++y + ++  ++ l  +++  e+  +     Gl ++q    ++ lrm   a a   e+ +       G  r a+     v  +a+ ++ +  sGG ++rl ia +l+t p l+f  ept Gl s  a+++   lr l +++g++vi   h    ++++  +rll++++G ++  G+
  MMETSP1137-20121227|5810_1  92 VKAGSITAVMGASGSGKTTLLNALSRR-GPCEGQIRYGQSGQewSKALKrRVAFVEQDDVCFG--GLtIKQSlifSAELRMPADADARTREKKVDDLISILGLSRCAN----TVVGNASAVESRGVSGGERKRLCIATELLTDPALLFCdEPTSGLDSFTAQVVieRLRDLTKQIGITVICSIHQPNSQVFSafERLLLLHKGSILYHGV 294
                 67899*******************986.6889******9996222222212222233322222..3324554222458999999999999999887776777766665....56667778999**************************9******9999998855799***************87777765447*********998886 PP

>> TIGR02203  MsbA_lipidA: lipid A export permease/ATP-binding protein MsbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.9   0.0   6.7e-20   4.4e-18     332     550 ..      70     293 ..      47     303 .. 0.78

  Alignments for each domain:
  == domain 1    score: 62.9 bits;  conditional E-value: 6.7e-20
   TIGR02203 332 vefrnvtfrypgddrealdsislkveaGevvalvGrsGsGkstlvnllpRFyepdsGeillDgvdladlkLasLRrqvalvsqdvvLFdd.tiaenvaYgeleevdeaeveealaaaylkdlvd..klpeGldtevGengsk....LsGGqRqRlaiaRallkdaPiLiLDeatsaLDneseRlvqaaLerlmkgRttlvia..hR.Lstieka.DrivvlddGkiverG 550
                 v+ r+++++ +g  + al   s  v+aG ++a++G sGsGk+tl+n l+R   p +G+i   g+  ++ + + L+r+va+v qd v F + ti + + ++++  ++ a+  +  ++  + dl+    l +  +t vG+ ++     +sGG R+Rl ia  ll d  +L  De ts LD+     v + L  l k+    vi   h   s +  a +r++ l +G i+ +G
  MMETSP1137-20121227|5810_1  70 VDWRDLSVTING--TRALLPCSGGVKAGSITAVMGASGSGKTTLLNALSRR-GPCEGQIRY-GQSGQEWS-KALKRRVAFVEQDDVCFGGlTIKQSLIFSAELRMP-ADADARTREKKVDDLISilGLSRCANTVVGNASAVesrgVSGGERKRLCIATELLTDPALLFCDEPTSGLDSFTAQVVIERLRDLTKQIGITVICsiHQpNSQVFSAfERLLLLHKGSILYHG 293
                 666777766654..5678888999**************************5.7999***87.66667776.78**********99999876999*****9985554.555666677778888772256788999***87653233489******************************************9998765444432265245555554788888888888777 PP

>> TIGR02314  ABC_MetN: D-methionine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.0   0.1   7.7e-20   5.1e-18      23     217 ..      87     287 ..      76     299 .. 0.71

  Alignments for each domain:
  == domain 1    score: 63.0 bits;  conditional E-value: 7.7e-20
   TIGR02314  23 nvslfvpkgqifgvigasgagkstlircvnllekptsgavivdgkdlttlsnaelvkarrqigmifqhfnllssrtvfg......nvalplelentpkekikrkvtellalvglsdkkdsypsn........lsggqkqrvaiaralasepkvllcdeatsaldpattqsilellkeinrrlgltillithemd.vvkricdevavidkg 217
                   s  v +g i  v+gasg+gk+tl+  +     p++g++   g+   + s+a     +r++ ++ q    +   t+ +      ++ +p + +++++   ++kv++l++++gls   ++   n        +sgg+++r+ ia  l ++p +l+cde ts ld  t+q ++e l+++ +++g+t++   h+ +  v +  +++ +++kg
  MMETSP1137-20121227|5810_1  87 PCSGGVKAGSITAVMGASGSGKTTLLNALSR-RGPCEGQIR-YGQSGQEWSKA----LKRRVAFVEQDDVCFGGLTIKQslifsaELRMPADADARTR---EKKVDDLISILGLSRCANTVVGNasavesrgVSGGERKRLCIATELLTDPALLFCDEPTSGLDSFTAQVVIERLRDLTKQIGITVICSIHQPNsQVFSAFERLLLLHKG 287
                 55666899*****************987764.579***975.45544444433....24445555555555555555550000005555555554444...579**********99888766553333333479****************************************************998887541355555555555555 PP

>> TIGR03873  F420-0_ABC_ATP: proposed F420-0 ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.0   0.1   8.1e-20   5.4e-18      25     219 ..      93     293 ..      73     301 .. 0.75

  Alignments for each domain:
  == domain 1    score: 63.0 bits;  conditional E-value: 8.1e-20
   TIGR03873  25 PaGaltgllGPnGsGkstllrllaGllapdaGevdlagadlkalsrrararrvalveqdsdaevplsvrdvvalG...riPhrslfaadsdedaevvdralarvelssladr........dlstlsGGerqrvhlaralaqePklllldePtnhldvsaqlellalvrela.aegvtvvvalhdlnla.asvcdhvvvldgGrvvaaG 219
                  aG++t+++G  GsGk+tll+ l+    p +G++ ++ +  + +s+ a  rrva veqd      l++++ +++    r+P      ad+   ++ vd +++  +ls  a+         +   +sGGer+r  +a  l  +P ll+ dePt  ld  +   +++ +r+l+ + g+tv+ ++h  n    s+ +++++l++G +   G
  MMETSP1137-20121227|5810_1  93 KAGSITAVMGASGSGKTTLLNALSR-RGPCEGQIRYGQSG-QEWSK-ALKRRVAFVEQDDVCFGGLTIKQSLIFSaelRMPAD----ADARTREKKVDDLISILGLSRCANTvvgnasavESRGVSGGERKRLCIATELLTDPALLFCDEPTSGLDSFTAQVVIERLRDLTkQIGITVICSIHQPNSQvFSAFERLLLLHKGSILYHG 293
                 58*******************9985.7899****986554.55665.44579******************9887633355554....44444445555555555555554431111111145679*******************************76555688889999734589*******99865157889********996555 PP

>> TIGR01842  type_I_sec_PrtD: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.6   0.0   8.2e-20   5.4e-18     339     537 ..      90     295 ..      65     301 .. 0.83

  Alignments for each domain:
  == domain 1    score: 62.6 bits;  conditional E-value: 8.2e-20
   TIGR01842 339 falkaGealaiiGpsgsGkssLarllvGvwlpasGsvrlDgadlkqwdretlGksiGYlPqdveLfeG.tvaeniaRfeenadaekvieaaklagvheli..lrlpkGYdteigegGa....aLsgGqrqRiaLaRalygdPklvvLDePnanLDeeGeqalakalkelkar.kitvvvithrps..llelvdkilvlkdGalkafGer 537
                   +kaG++ a++G+sgsGk++L   l     p +G++r  g + ++w +  l +++ ++ qd   f G t+++ +    e   + +  +  +  +v +li  l l +  +t++g++ a    ++sgG r+R+ +a  l  dP+l+  DeP + LD+   q +++ l +l ++ +itv+   h+p+  + ++ +++l+l++G++  +G +
  MMETSP1137-20121227|5810_1  90 GGVKAGSITAVMGASGSGKTTLLNALS-RRGPCEGQIRY-GQSGQEWSK-ALKRRVAFVEQDDVCFGGlTIKQSLIFSAELRMPADADARTREKKVDDLIsiLGLSRCANTVVGNASAvesrGVSGGERKRLCIATELLTDPALLFCDEPTSGLDSFTAQVVIERLRDLTKQiGITVICSIHQPNsqVFSAFERLLLLHKGSILYHGVA 295
                 5699*******************9986.567789****8.667788975.79**********99999989999987666655566666667888899996337899********9764333389********************************************9887255666666887533899*************999865 PP

>> TIGR01166  cbiO: cobalt ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.1   0.0   1.5e-19   9.9e-18      11     186 ..      88     269 ..      79     271 .. 0.80

  Alignments for each domain:
  == domain 1    score: 62.1 bits;  conditional E-value: 1.5e-19
   TIGR01166  11 lnlavergevlallGanGaGkstlllhlnGllrPksGkvlldGeeldysrkgllelrkkvalvlqdpddqlfa.advdedvafgp.lnlGls.eaev.errvrealaavdisgleerpt........hllsgGekkrvaiagavalrpdvllldePtagldpaGaeqlleilrklree.Gktvvisthd 186
                  +  v+ g+ +a++Ga G+Gk+tll+ l+    P +G++ ++ +  ++s+    +l+++va+v qd  d  f   ++++ + f+  l +  + +a+  e++v++ ++ +++s  ++  +        + +sgGe+kr+ ia+ +   p +l+ dePt+gld+  a+ ++e lr l+++ G tv+ s h 
  MMETSP1137-20121227|5810_1  88 CSGGVKAGSITAVMGASGSGKTTLLNALSR-RGPCEGQIRYGQSGQEWSK----ALKRRVAFVEQD--DVCFGgLTIKQSLIFSAeLRMPADaDARTrEKKVDDLISILGLSRCANTVVgnasavesRGVSGGERKRLCIATELLTDPALLFCDEPTSGLDSFTAQVVIERLRDLTKQiGITVICSIHQ 269
                 55568899********************96.57*********9999**98....478899999775..67775269*******8624555441333325689********999887654222112225689********************************************8766*******995 PP

>> TIGR01846  type_I_sec_HlyB: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.3   0.1   3.5e-19   2.3e-17     480     673 ..      92     293 ..      82     300 .. 0.80

  Alignments for each domain:
  == domain 1    score: 60.3 bits;  conditional E-value: 3.5e-19
   TIGR01846 480 ikaGeviGivGpsGsGkstltkllqrlyvPekGrvlvdgvdlaladPawlrrqvgvvlqenvlfsr.sirdnial.akPaisee.kviaaaklaGahdfiselkqGyetevgekGa....alsGGqrqrialaralvanPrilildeatsaldyeseavimrnlreick..grtviiiahrlst..vraadrilvlekGkivesG 673
                 +kaG +  ++G sGsGk+tl   l r   P +G++   +   ++   ++l+r+v+ v q++v f + +i++ +   a+  ++ +   ++  k       i  l +  +t vg+  a     +sGG r+r+ +a  l+++P +l  de ts ld  + +v+ ++lr+++k  g tvi+  h+ ++    a +r+l+l+kG i+ +G
  MMETSP1137-20121227|5810_1  92 VKAGSITAVMGASGSGKTTLLNALSR-RGPCEGQIRYGQ--SGQEWSKALKRRVAFVEQDDVCFGGlTIKQSLIFsAELRMPADaDARTREKKVDDLISILGLSRCANTVVGNASAvesrGVSGGERKRLCIATELLTDPALLFCDEPTSGLDSFTAQVVIERLRDLTKqiGITVICSIHQPNSqvFSAFERLLLLHKGSILYHG 293
                 799*******************9999.5799***98755..47888999***************98345555443144555543123333444444445678899999999987663333699*********************************************95678****99*97653256789**********9887 PP

>> TIGR03797  NHLM_micro_ABC2: NHLM bacteriocin system ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.7   0.1   6.2e-19   4.1e-17     465     666 ..      81     293 ..      69     304 .. 0.79

  Alignments for each domain:
  == domain 1    score: 59.7 bits;  conditional E-value: 6.2e-19
   TIGR03797 465 gplvLddvslkiepGefvaivGaSGsGKStllrlLLgFekPesGsvlyDGqdlekldvqavRrqlGvVLQngrllsg.sileniaggasltl.deaweaarmagleeDikamPmg..lhTviseg....ggtlSGGQrQRlliAralvrkPrillfDEATSALDNrtQaiVsesleklk....vtRiviAHR.LSTirna.drilvleeGrvveqG 666
                 g++ L   s  +++G   a++GaSGsGK tll   L+   P +G++ y Gq  ++   +a++r++  V Q+   + g +i ++++ +a+l +  +a +  r+  +++ i+ + ++    Tv+ ++    + ++SGG r+Rl iA  l + P +l+ DE TS LD  t ++V+e l  l     +t i   H   S +  a +r+l l++G +  +G
  MMETSP1137-20121227|5810_1  81 GTRALLPCSGGVKAGSITAVMGASGSGKTTLLNA-LSRRGPCEGQIRY-GQSGQEW-SKALKRRVAFVEQDDVCFGGlTIKQSLIFSAELRMpADADARTREKKVDDLISILGLSrcANTVVGNAsaveSRGVSGGERKRLCIATELLTDPALLFCDEPTSGLDSFTAQVVIERLRDLTkqigITVICSIHQpNSQVFSAfERLLLLHKGSILYHG 293
                 666677778889********************97.58899********.5555554.479***********999988568888998888665156666678888888888776652278***8862222579*****************************************9976532222677766676346776665778888888877666 PP

>> TIGR03796  NHLM_micro_ABC1: NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.2   0.1   7.2e-19   4.8e-17     502     693 ..      92     293 ..      87     301 .. 0.76

  Alignments for each domain:
  == domain 1    score: 59.2 bits;  conditional E-value: 7.2e-19
   TIGR03796 502 lkpGqrvAlvGgsGsGkstiaklvaGlyepwsGeilfDgkpreeiprevlanslalvdqdivlfeg.tvrdnltlwdetipeedlvrAakDAaihdvilar..pggyeaelae....gganlsGGqrqRleiARaLvknPsiLilDEatsaLDaetEkaidenlr....rRgctciivaHR.LstiRdc.deiivlerGkvverG 693
                 +k G+  A++G+sGsGk t+   ++    p +G+i++ g++ +e ++ +l+  +a+v+qd v f+g t+++ l +  e    +d    +++  ++d i  +  +   ++ + +    +++ +sGG+r+Rl iA  L ++P++L  DE ts LD+ t + + e+lr    + g+t+i   H   s +  + +++++l +G ++ +G
  MMETSP1137-20121227|5810_1  92 VKAGSITAVMGASGSGKTTLLNALSR-RGPCEGQIRY-GQSGQEWSK-ALKRRVAFVEQDDVCFGGlTIKQSLIFSAELRMPADADARTREKKVDDLISILglSRCANTVVGNasavESRGVSGGERKRLCIATELLTDPALLFCDEPTSGLDSFTAQVVIERLRdltkQIGITVICSIHQpNSQVFSAfERLLLLHKGSILYHG 293
                 789****************9888875.679******9.566666665.68999*******99999968888886655555556667778999999987654114444444433111145789****************************************9984433568888887776235554432666777777776655 PP

>> TIGR02204  MsbA_rel: ABC transporter, permease/ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.3   0.1     9e-19   5.9e-17     362     556 ..      91     293 ..      81     301 .. 0.83

  Alignments for each domain:
  == domain 1    score: 59.3 bits;  conditional E-value: 9e-19
   TIGR02204 362 tvrpGetvalvGPsGaGkstllelllrfydPqsGailldGvdlreldpeelrerlalvpqdsalfaa.svleniryGrpdasdeeveaaakaaeadefis..klpeGydtllGergv....tLsGGqkqriaiarailkdapiLLLdeatsaLdaeseqlvqqaleelmkgrttlvia..hr.Latvlka.drivvldkGriveqG 556
                  v++G   a++G sG+Gk+tll+ l r   P +G+i+ + +   +   + l++r+a+v+qd + f +  +++ + +       ++  a +++ + d++is   l++  +t +G+ +      +sGG ++r+ ia  +l d  +L+ de ts Ld+ + q v + l  l k+    vi   h+  + v +a +r++ l kG i  +G
  MMETSP1137-20121227|5810_1  91 GVKAGSITAVMGASGSGKTTLLNALSRR-GPCEGQIRYG-QSG-QEWSKALKRRVAFVEQDDVCFGGlTIKQSLIFSAELRMPADADARTREKKVDDLISilGLSRCANTVVGNASAvesrGVSGGERKRLCIATELLTDPALLFCDEPTSGLDSFTAQVVIERLRDLTKQIGITVICsiHQpNSQVFSAfERLLLLHKGSILYHG 293
                 5899**********************95.8*******85.444.445678***************873677899999998889999999999999999873367999******9754122269*********************************************99865444432265245677665899999999998777 PP

>> TIGR01277  thiQ: thiamine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.3   0.0   5.4e-18   3.6e-16      19     208 ..      90     290 ..      76     295 .. 0.83

  Alignments for each domain:
  == domain 1    score: 57.3 bits;  conditional E-value: 5.4e-18
   TIGR01277  19 lsveaGervailGesGaGkstllnliaGflepasGeikvndkdhtrsapyerpvsmlfqennlfahltvrqniglGlkpgl..klna.vqkekvedvarqvGiadylerlpee........lsGGqrqrvalarclvrekpillldepfsaldpklreemlalvkkladekkltlllvthsls.daaaiasqvvvvedGkik 208
                   v+aG + a++G sG+Gk+tlln ++    p +G+i+  +  +  s   +r v+ + q++  f  lt++q + +  +  +    +a  +++kv+d+   +G++   + + ++        +sGG+r+r+ +a  l+ +  +l+ dep s ld    + ++  ++ l+++  +t++   h+++ ++ +  ++ +++++G i 
  MMETSP1137-20121227|5810_1  90 GGVKAGSITAVMGASGSGKTTLLNALSR-RGPCEGQIRYGQSGQEWSKALKRRVAFVEQDDVCFGGLTIKQSLIFSAELRMpaDADArTREKKVDDLISILGLSRCANTVVGNasavesrgVSGGERKRLCIATELLTDPALLFCDEPTSGLDSFTAQVVIERLRDLTKQIGITVICSIHQPNsQVFSAFERLLLLHKGSIL 290
                 5799********************9975.79****************************************9987655444003344145568999999999987776654432222223389**********************************************************861556677999999999986 PP

>> TIGR03269  met_CoM_red_A2: methyl coenzyme M reductase system, component A2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.4   0.0   0.00027     0.018       4      89 ..      73     155 ..      70     182 .. 0.78
   2 !   43.8   0.0     4e-14   2.7e-12     166     255 ..     207     297 ..     197     304 .. 0.90

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 0.00027
   TIGR03269   4 enltkkfdglevlknisleleeGevlGilGksGaGksvllhllrGldeyeptsGkiiyhvalcekcgyverpskvGekcpkcgekl 89 
                  +l +  +g+++l   s  ++ G +  ++G sG+Gk+ ll+ l       p +G+i y  +  e  + ++r+    e+ ++c + l
  MMETSP1137-20121227|5810_1  73 RDLSVTINGTRALLPCSGGVKAGSITAVMGASGSGKTTLLNALS---RRGPCEGQIRYGQSGQEWSKALKRRVAFVEQDDVCFGGL 155
                 5788888999999999999999***************9988774...446888999888877777777777766666666665555 PP

  == domain 2    score: 43.8 bits;  conditional E-value: 4e-14
   TIGR03269 166 ardlsGGekqrvvlarqlakeplllladeptGtldpktaklvhealkeavkeedislvltshwpe.viedlsdkaillekGeiveeGepee 255
                 +r +sGGe++r+ +a +l  +p ll+ dept  ld  ta++v e l++  k+ +i+++ + h p+  +    ++ +ll+kG+i   G ++ 
  MMETSP1137-20121227|5810_1 207 SRGVSGGERKRLCIATELLTDPALLFCDEPTSGLDSFTAQVVIERLRDLTKQIGITVICSIHQPNsQVFSAFERLLLLHKGSILYHGVATG 297
                 5899**********************************************************9962345667999********99987665 PP

>> TIGR00958  3a01208: antigen peptide transporter 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.0   0.0   7.3e-18   4.8e-16     504     695 ..      92     293 ..      89     298 .. 0.82

  Alignments for each domain:
  == domain 1    score: 56.0 bits;  conditional E-value: 7.3e-18
   TIGR00958 504 lepGevvalVGPsGsGKStvaallenlYqPtgGqvllDgkplkeydhkylhrkvalVgqEPvlfsg.svreNiaYGltktedeevtaaakaanahdFis..elekgydtevgekGsq....lsgGqkqriAiARALvrkPrvLiLDeAtSALDa....eveqllqesksaksrtvlliahr..LstvekadkilvlkkgsvvelG 695
                 +++G+++a+ G sGsGK t    l +   P +Gq+   g+  +e+  k l+r+va V+q+ v f+g ++++ + +  +    ++  a +++ +++d is  +l +  +t vg++       +sgG ++r+ iA  L+ +P++L  De tS LD+     v + l +  ++ + tv+   h+   ++    ++ l+l+kgs+   G
  MMETSP1137-20121227|5810_1  92 VKAGSITAVMGASGSGKTTLLNALSRR-GPCEGQIRY-GQSGQEW-SKALKRRVAFVEQDDVCFGGlTIKQSLIFSAELRMPADADARTREKKVDDLISilGLSRCANTVVGNASAVesrgVSGGERKRLCIATELLTDPALLFCDEPTSGLDSftaqVVIERLRDLTKQIGITVICSIHQpnSQVFSAFERLLLLHKGSILYHG 293
                 789******************999985.8******97.6666666.578***************9979*********999999999**********9873367888******98754223389*******************************644323334455888889999987776223455666888999999887655 PP

>> TIGR01186  proV: glycine betaine/L-proline transport ATP binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.5   0.0   8.1e-18   5.3e-16      16     211 ..      92     292 ..      81     297 .. 0.83

  Alignments for each domain:
  == domain 1    score: 56.5 bits;  conditional E-value: 8.1e-18
   TIGR01186  16 ieeGeiiviiGlsGsGkstlvrllnrliePtaGkilidGediaeisdaelrevrrkkiamviqkialfPhmtildnislglel...lkideqerkekalealklvdleeyedry........PdelsGGmqqrvGlaralaaePdlllmdeafsaldPlirdelqdelvklqkklqktivfithdlde.alrlgdrivilkaGeivqv 211
                 ++ G i  ++G sGsGk+tl+  l r   P +G+i   G++  e s+a      ++++a+v q+   f   ti++ + ++ el   ++ d++ r++k  +++  ++l   +++            +sGG ++r+ +a  l ++P ll+ de+ s ld ++ + + + l +l k++  t++   h  +   +   +r+ +l++G i+  
  MMETSP1137-20121227|5810_1  92 VKAGSITAVMGASGSGKTTLLNALSRR-GPCEGQIRY-GQSGQEWSKA-----LKRRVAFVEQDDVCFGGLTIKQSLIFSAELrmpADADARTREKKVDDLISILGLSRCANTVvgnasaveSRGVSGGERKRLCIATELLTDPALLFCDEPTSGLDSFTAQVVIERLRDLTKQIGITVICSIHQPNSqVFSAFERLLLLHKGSILYH 292
                 7899********************996.8*****974.6665565554.....4799**************************4333577888999999999****987766541111111145699*****************************************************9999876515567799999999998765 PP

>> TIGR01184  ntrCD: nitrate ABC transporter, ATP-binding proteins C and D
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.8   0.0   1.6e-17     1e-15       8     191 ..      92     287 ..      88     295 .. 0.83

  Alignments for each domain:
  == domain 1    score: 55.8 bits;  conditional E-value: 1.6e-17
   TIGR01184   8 ikkgefislighsgcgkstllnliaglekptsgavil..egkeitepgpdrmv.vfqnysllpwltvrenialavda.vlrdlskserreiveehielvglreaadkrpeq........lsggmkqrvaiaralsirpklllldepfgaldaltreelqekllkiveearvtvlmvthdvdeallls.drvvmltng 191
                 +k g + +++g sg gk+tlln ++    p++g ++    g+e ++    r+  v q+   +  lt+++ + ++ +  + +d++   r++ v++ i+++gl++ a+  +++        +sgg ++r+ ia  l + p ll+ dep   ld++t + + e+l +++++  +tv+   h+ +  ++ + +r+++l +g
  MMETSP1137-20121227|5810_1  92 VKAGSITAVMGASGSGKTTLLNALSR-RGPCEGQIRYgqSGQEWSKALKRRVAfVEQDDVCFGGLTIKQSLIFSAELrMPADADARTREKKVDDLISILGLSRCANTVVGNasavesrgVSGGERKRLCIATELLTDPALLFCDEPTSGLDSFTAQVVIERLRDLTKQIGITVICSIHQPNSQVFSAfERLLLLHKG 287
                 789999*****************996.68******86336888887766665325588899999******99888751556888899999***********99887654321222222399*********************************************************9999888765788888777 PP

>> TIGR02324  CP_lyasePhnL: phosphonate C-P lyase system protein PhnL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.0   2.3e-06   0.00015      31      94 ..      92     152 ..      82     163 .. 0.88
   2 !   34.4   0.0   4.9e-11   3.2e-09     150     209 ..     210     270 ..     191     282 .. 0.88

  Alignments for each domain:
  == domain 1    score: 19.1 bits;  conditional E-value: 2.3e-06
   TIGR02324  31 veaGelvalsGksGaGkstllkslyanYlpesgrilvrhegeivdlvkaserevlevRrktigy 94 
                 v+aG ++a++G+sG+Gk tll +l +   +e g+i++ ++g+     ka +r+v  v + ++ +
  MMETSP1137-20121227|5810_1  92 VKAGSITAVMGASGSGKTTLLNALSRRGPCE-GQIRYGQSGQEW--SKALKRRVAFVEQDDVCF 152
                 89**********************9998888.899998888755..799999999998888776 PP

  == domain 2    score: 34.4 bits;  conditional E-value: 4.9e-11
   TIGR02324 150 fsGGekqRvniaraliadrPiLLLdePtasLdaanrkvvvelikea.kargaaligifhde 209
                  sGGe++R+ ia  l++d  +L  dePt+ Ld+ + +vv+e ++++ k+ g+++i  +h+ 
  MMETSP1137-20121227|5810_1 210 VSGGERKRLCIATELLTDPALLFCDEPTSGLDSFTAQVVIERLRDLtKQIGITVICSIHQP 270
                 79***************8778888*****************999863778*****999975 PP

>> TIGR01189  ccmA: heme ABC exporter, ATP-binding protein CcmA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.5   0.0   3.7e-17   2.5e-15       4     187 ..      73     269 ..      70     281 .. 0.84

  Alignments for each domain:
  == domain 1    score: 54.5 bits;  conditional E-value: 3.7e-17
   TIGR01189   4 eelaveRgervlleglsfelaaGealvveGpnGiGKttLLRilaGLlkpesGevelndkelaeqrdelaeellylgHldglKaeLsalEnLkfyaallq.......seqktveealekvgLsgledlpvaqLsA........GqkrRlalarLllskaplWiLDEPttalDkegvellaellaaHlargGivllathqd 187
                 ++l+v+ ++++ l   s  ++aG + +v G  G+GKttLL  l+    p +G++++ ++  +e  + l+++++++   d   + L+++  L f a+l         + +k+v++ +  +gLs +++++v + sA        G ++Rl +a  ll+   l   DEPt  lD  + +++ e+l++ +++ Gi+++ + ++
  MMETSP1137-20121227|5810_1  73 RDLSVTINGTRALLPCSGGVKAGSITAVMGASGSGKTTLLNALSR-RGPCEGQIRYGQSG-QEWSKALKRRVAFVEQDDVCFGGLTIKQSLIFSAELRMpadadarTREKKVDDLISILGLSRCANTVVGNASAvesrgvsgGERKRLCIATELLTDPALLFCDEPTSGLDSFTAQVVIERLRDLTKQIGITVICSIHQ 269
                 56777788888888889999***********************95.6799******9555.66677899**********99999999999999998876555555444559999**********9999876555444444449***********************************************998876443 PP

>> TIGR01978  sufC: FeS assembly ATPase SufC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.1   0.0   9.6e-17   6.3e-15       4     227 ..      73     293 ..      70     299 .. 0.75

  Alignments for each domain:
  == domain 1    score: 53.1 bits;  conditional E-value: 9.6e-17
   TIGR01978   4 kdlhvsvedkeiLkglnlevkkGevhaimGpnGsGkstLskvlaghekyevtsGeiklkgqdlleleveeraraGlflafqapeeipGvsnkeflrsalnavrkargeeeldllefekllkeklellelde......elleRslneGfsGGekkrneilqlallePklaiLDeiDsGlDvDalkivaegvnklreeekalliit.hyerllelikPdvvhvlldGrivksG 227
                 +dl+v+++  + L   +  vk+G + a+mG+ GsGk tL ++l+ +  +   +G+i++ ++  +e +     ++ + +  q  +   G+++k+ l  +++ +  a+     d++  ek++++ +++l l++        ++     G sGGe+kr  i   +l +P l   De  sGlD  + ++v+e + +l ++   ++i + h+ +     + + + +l++G i+ +G
  MMETSP1137-20121227|5810_1  73 RDLSVTINGTRALLPCSGGVKAGSITAVMGASGSGKTTLLNALSRRGPC---EGQIRYGQSG-QEWSKA--LKRRVAFVEQDDVCFGGLTIKQSLIFSAELRMPADA----DARTREKKVDDLISILGLSRcantvvGNASAVESRGVSGGERKRLCIATELLTDPALLFCDEPTSGLDSFTAQVVIERLRDLTKQIGITVICSiHQPNSQVFSAFERLLLLHKGSILYHG 293
                 79*****************************************998775...7***996554.444333..333344557999999****99988777776663333....44555566666666666555333221222333457***********************************************99955555554255555445566889999999998877 PP

>> TIGR01193  bacteriocin_ABC: ABC-type bacteriocin transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.9   0.0   3.6e-17   2.4e-15     497     690 ..      92     293 ..      80     301 .. 0.76

  Alignments for each domain:
  == domain 1    score: 53.9 bits;  conditional E-value: 3.6e-17
   TIGR01193 497 ikknekitlvGlsGsGkstlakllvkffqaesGeillngkslkdidkhelrqlinylPqePfifsG.silenlllgakenvsqeeikkaveiaeikddie..klplGyqtel....seeassisgGqkqrlalarallsdskvlildestsnldlltekkivenllklkdk...tiifvahr..lsvakksdkiivldeGkiieqG 690
                 +k+ + ++++G sGsGk+tl   l +   + +G+i  ++   ++ + ++l++ ++++ q+ + f G +i + l++ a+ ++  +   +  +   ++d i    l+   +t +    ++e+  +sgG ++rl++a  ll+d  +l  de ts ld  t + ++e+l  l+++   t+i   h+   +v +  ++++ l++G i+ +G
  MMETSP1137-20121227|5810_1  92 VKAGSITAVMGASGSGKTTLLNALSR-RGPCEGQIRYGQSG-QEWS-KALKRRVAFVEQDDVCFGGlTIKQSLIFSAELRMPADAD-ARTREKKVDDLISilGLSRCANTVVgnasAVESRGVSGGERKRLCIATELLTDPALLFCDEPTSGLDSFTAQVVIERLRDLTKQigiTVICSIHQpnSQVFSAFERLLLLHKGSILYHG 293
                 6888999**************99976.57999***998764.6666.579999*************56667777777655544432.22233334433330033333444331111567889*********************************************988644467777786224688999999999999998877 PP

>> TIGR01288  nodI: nodulation ABC transporter NodI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.9   0.1   3.5e-16   2.3e-14      26     195 ..      91     270 ..      77     300 .. 0.80

  Alignments for each domain:
  == domain 1    score: 50.9 bits;  conditional E-value: 3.5e-16
   TIGR01288  26 tiaagecfgllgpngagkstiarlvlglispdegkitvlgepvpararlarakigvvpqfdnldreftvrenllvfgryfgl....streieevipsllefarleskadvrvad........lsggmkrrltlaralindpqllildepttgldpharhliwerlrslla.rgktilltthlm 195
                  + ag    ++g  g+gk+t+    l    p eg+i   g+     +++ + ++  v q d     +t+++ l +f   +++    ++r+ e+ +  l+ +  l   a++ v +        +sgg ++rl +a+ l+ dp ll  dept+gld  + +++ erlr l    g t++ + h  
  MMETSP1137-20121227|5810_1  91 GVKAGSITAVMGASGSGKTTLLNA-LSRRGPCEGQIRY-GQSGQEWSKALKRRVAFVEQDDVCFGGLTIKQSL-IFSAELRMpadaDARTREKKVDDLISILGLSRCANTVVGNasavesrgVSGGERKRLCIATELLTDPALLFCDEPTSGLDSFTAQVVIERLRDLTKqIGITVICSIHQP 270
                 678999999***********9875.67899******86.555666677788899***************9886.6787888744446899*****99999999998888877542223333379*******************************************9752588988888864 PP

>> TIGR03740  galliderm_ABC: lantibiotic protection ABC transporter, ATP-binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.2   0.0     4e-16   2.7e-14      22     206 ..      91     293 ..      71     299 .. 0.78

  Alignments for each domain:
  == domain 1    score: 51.2 bits;  conditional E-value: 4e-16
   TIGR03740  22 kvkknsvygllGpnGaGkstllklltGllrktsGeill..dgrewtrkdlkkiGsliesPalyenltarenlkvrtlll.......glpesrieevlkivdlentekkkakq........fslGmkqrlGiaiallnkPkllildePtnGldPlGiqelreliksfpek.Gitvilsshi.lsevelladhiGiiseGklkyek 206
                  vk  s+ +++G  G+Gk+tll  l+    + +G+i +   g+ew++   + +  + ++   ++ lt ++ l   + l+          e++++++++i++l+      +++         s G ++rl ia  ll +P ll  dePt Gld +  q + e ++ ++++ Gitvi s h   s+v    + + ++++G + y++
  MMETSP1137-20121227|5810_1  91 GVKAGSITAVMGASGSGKTTLLNALSR-RGPCEGQIRYgqSGQEWSKALKRRVAFVEQDDVCFGGLTIKQSLIFSAELRmpadadaRTREKKVDDLISILGLSRCANTVVGNasavesrgVSGGERKRLCIATELLTDPALLFCDEPTSGLDSFTAQVVIERLRDLTKQiGITVICSIHQpNSQVFSAFERLLLLHKGSILYHG 293
                 689999*****************9986.57999***97436899*988777777777778889******999888776522222123567899********987665544431111111167799********************************9999999988776********97357888888888888888888865 PP

>> TIGR03411  urea_trans_UrtD: urea ABC transporter, ATP-binding protein UrtD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.9   0.0   5.1e-16   3.3e-14       5     224 ..      72     293 ..      68     298 .. 0.77

  Alignments for each domain:
  == domain 1    score: 50.9 bits;  conditional E-value: 5.1e-16
   TIGR03411   5 vedvsvsfdgfkalndlslsveegelrviiGpnGaGkttllDvitGktrpdeGsvlfkgkdltklkeaeiarlGigRkfqkpsvfeeltvlenlelalkadksvlallfarlskeekerieevleligLeekadkkagl........LshGqkqwLeigmllvqepkllllDePvaGmtdeetektaellkelakersvvvve..hD.mefvrelaekvtvlheGkvlaeG 224
                  +d+sv+ +g +al   s  v++g++ +++G+ G+Gkttll++++ +  p eG++ + ++    ++ ++  +  ++   q    f  lt+++ l  +++      a    r   +++++++++++++gL++ a++  g+        +s G++++L i+  l+ +p+ll+ DeP++G+ +   + + e l++l+k+  + v+   h   + v +  e++  lh+G++l +G
  MMETSP1137-20121227|5810_1  72 WRDLSVTINGTRALLPCSGGVKAGSITAVMGASGSGKTTLLNALSRRG-PCEGQIRYGQSG---QEWSKALKRRVAFVEQDDVCFGGLTIKQSLIFSAELRMPADADA--R---TREKKVDDLISILGLSRCANTVVGNasavesrgVSGGERKRLCIATELLTDPALLFCDEPTSGLDSFTAQVVIERLRDLTKQIGITVICsiHQpNSQVFSAFERLLLLHKGSILYHG 293
                 689*****************************************9877.999****99873...3334445556667789*************999887655444333..3...334445555555555544444333211112222799**********************************************98888742244155677778999999****99988 PP

>> TIGR01192  chvA: glucan exporter ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.3   0.0   3.9e-15   2.6e-13     335     525 ..      70     263 ..      51     298 .. 0.78

  Alignments for each domain:
  == domain 1    score: 47.3 bits;  conditional E-value: 3.9e-15
   TIGR01192 335 vefrdisfefanssqgvrdvsfeakagqtvaivgptgagkttlinllqrvydpksgqilidgvdiatvtreslrksiatvfqdaglln.rsirenirlgredatdeevveaakaaaasdfie..krlkgydtlvgergn....rlsggerqrlaiarailknapilvldeatsaldvetearvkdaidalrknrttfi 525
                 v++rd+s  + n ++ +   s  +kag   a++g +g+gkttl+n l r   p +gqi       +    ++l++ +a v qd   +   +i++ + +  e    ++  + ++     d+i+    ++  +t+vg+  +     +sgger+rl ia  +l +  +l  de ts ld  t   v + +  l+k+    +
  MMETSP1137-20121227|5810_1  70 VDWRDLSVTI-NGTRALLPCSGGVKAGSITAVMGASGSGKTTLLNALSR-RGPCEGQIRYGQ-SGQ-EWSKALKRRVAFVEQDDVCFGgLTIKQSLIFSAELRMPADADARTREKKVDDLISilGLSRCANTVVGNASAvesrGVSGGERKRLCIATELLTDPALLFCDEPTSGLDSFTAQVVIERLRDLTKQIGITV 263
                 5666666654.566677788999*************************9.58******9753.333.34679**********987775279*******9999999999999999999999752267888999**98753222159*******************************9998888777766666543333 PP

>> TIGR02770  nickel_nikD: nickel import ATP-binding protein NikD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.0   0.0   6.3e-15   4.2e-13       9     204 ..      92     289 ..      88     297 .. 0.76

  Alignments for each domain:
  == domain 1    score: 47.0 bits;  conditional E-value: 6.3e-15
   TIGR02770   9 lkrgkvlalvGesGsGksltalailglldkeltktsGeilldgkelaalalrgreialilqnPrsafnPlltikeqlletlkaleklskqak...elivealeavgLeeaeevl.....kkypfelsGGmlqRvmialallleaplliaDePttdlDvvvqaevLklleelrekrglgillithDl.gvvaeladevavmekGki 204
                 +k g ++a++G+sGsGk++   a+           +G+i+        ++  +r++a++ q+ + +f  l tik+ l+ + + +    ++a+   +++ + ++  gL+  ++ +        +  +sGG  +R+ ia  ll++++ll+ DePt+ lD  ++  v++ l++l+++ g++++   h   + v    + +++++kG i
  MMETSP1137-20121227|5810_1  92 VKAGSITAVMGASGSGKTTLLNALSR-----RGPCEGQIRYGQSGQEWSKALKRRVAFVEQDDV-CFGGL-TIKQSLIFSAELRMPADADARtreKKVDDLISILGLSRCANTVvgnasAVESRGVSGGERKRLCIATELLTDPALLFCDEPTSGLDSFTAQVVIERLRDLTKQIGITVICSIHQPnSQVFSAFERLLLLHKGSI 289
                 899**************986665544.....44599***99888888889999********975.99886.8999998877776666544431114556677888999876544121111233469***************************************************9998777531344444566666666666 PP

>> TIGR03522  GldA_ABC_ATP: gliding motility-associated ABC transporter ATP-binding subunit GldA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.1   0.0   7.1e-15   4.7e-13       2     212 ..      69     291 ..      68     298 .. 0.83

  Alignments for each domain:
  == domain 1    score: 47.1 bits;  conditional E-value: 7.1e-15
   TIGR03522   2 svevsdlsklygkqkaldevsfeaekGeivGflGPnGaGkstlmkiltgylkadsGsvavagedvlknslevrkniGylPehnPlyldlyvreylefsaaly...klkgrklkkrveelielvGlkaeqhkkiga........lskGyrqrvGlakallhdPkvlildePttGldP..nqlv..eirevikeiakdktvilsthim.qevealcdrviiinkGkiva 212
                 sv  +dls +    +al   s  ++ G+i+  +G  G+Gk+tl+  l+    +  G +   g++  + s++ ++ + ++ + +  +  l +++ l fsa+l    + + r+++k+v++li   Gl++ +   +g+        +s G r+r  +a  ll dP +l  dePt+Gld    q+v   +r++ k+i+   tvi s h    +v +  +r+++++kG i+ 
  MMETSP1137-20121227|5810_1  69 SVDWRDLSVTINGTRALLPCSGGVKAGSITAVMGASGSGKTTLLNALSRR-GPCEGQIR-YGQSGQEWSKALKRRVAFVEQDDVCFGGLTIKQSLIFSAELRmpaDADARTREKKVDDLISILGLSRCANTVVGNasavesrgVSGGERKRLCIATELLTDPALLFCDEPTSGLDSftAQVVieRLRDLTKQIGI--TVICSIHQPnSQVFSAFERLLLLHKGSILY 291
                 677778888888888888999999*********************99865.66778887.6889999*********************************97222355678899************9999988863333333367799***************************73357663358999999995..99***9975156888889999999999985 PP

>> TIGR03771  anch_rpt_ABC: anchored repeat-type ABC transporter, ATP-binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.6   0.1   4.4e-14   2.9e-12       3     188 ..      92     286 ..      91     301 .. 0.69

  Alignments for each domain:
  == domain 1    score: 44.6 bits;  conditional E-value: 4.4e-14
   TIGR03771   3 vdkGellgllGpnGaGkttllrailglikvakGsvkvagks...srkgrreiGyvpqrhefawdfpidveqtvlsGragliGllrrpkkadfaa....vadalervklteladrpvGe........lsGGqrqrvlvaralavkpslllldepftGldlpsqellvelfeelage.gtailmtthdl.aeavatcdrvvllng 188
                 v++G + +++G  G+Gkttll a+     + +G+++ +      s+  +r++ +v q         i+    ++s        lr p  ad ++    v+d ++   l++ a+  vG+        +sGG+r+r+ +a  l ++p ll+ dep +Gld  + + ++e +++l+++ g +++ + h+  ++  ++ +r++ll +
  MMETSP1137-20121227|5810_1  92 VKAGSITAVMGASGSGKTTLLNALSRR-GPCEGQIRYGQSGqewSKALKRRVAFVEQDDVCFGGLTIKQ-SLIFSA------ELRMPADADARTrekkVDDLISILGLSRCANTVVGNasavesrgVSGGERKRLCIATELLTDPALLFCDEPTSGLDSFTAQVVIERLRDLTKQiGITVICSIHQPnSQVFSAFERLLLLHK 286
                 57899****************996655.5599***9875321114455678888888765555554442.223333......3333333333221111444455555555555555542222234479********************************************865499*******96256778889*999864 PP

>> TIGR03415  ABC_choXWV_ATP: choline ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.1   0.0   3.4e-13   2.2e-11      43     247 ..      88     293 ..      80     298 .. 0.81

  Alignments for each domain:
  == domain 1    score: 41.1 bits;  conditional E-value: 3.4e-13
   TIGR03415  43 asldveeGeilvlmGlsGsGkssllravnglnpvsrGkvlvkdedkevdvakcdeatlrklrtkrvsmvfqkfallPWrtveenvafGlelsGvakae...rrkrveeqlelvglaeWadkkvge........lsGGmqqrvGlarafateadillmdePfsaldPliraklqdellelqkklkktivfvshdld.ealklGnriaimegGrivqlg 247
                 +s  v+ G i+ +mG sGsGk++ll a+ +  p + G+++           +  ++  + l+ +rv+ v q    +  +t+++ + f  el+  a+a+   r k+v++ + ++gl+  a++ vg+        +sGG ++r+ +a  + t+  +l+ deP s ld +  + + + l +l k++  t++   h  + + +   +r+ ++++G i+ +g
  MMETSP1137-20121227|5810_1  88 CSGGVKAGSITAVMGASGSGKTTLLNALSRRGP-CEGQIRY---------GQSGQEWSKALK-RRVAFVEQDDVCFGGLTIKQSLIFSAELRMPADADartREKKVDDLISILGLSRCANTVVGNasavesrgVSGGERKRLCIATELLTDPALLFCDEPTSGLDSFTAQVVIERLRDLTKQIGITVICSIHQPNsQVFSAFERLLLLHKGSILYHG 293
                 667799*******************99988666.4565544.........444444445553.69***********************99987777652226689999***********9987653333344479*****************************************************99998652567777788888888887776 PP

>> TIGR03005  ectoine_ehuA: ectoine/hydroxyectoine ABC transporter, ATP-binding protein EhuA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.5   0.1   4.8e-12   3.2e-10      22     229 ..      91     293 ..      74     298 .. 0.77

  Alignments for each domain:
  == domain 1    score: 37.5 bits;  conditional E-value: 4.8e-12
   TIGR03005  22 evaaGekvaliGpsGsGkstilrilmtletideGsikvegeqlyhmkgrkGklvpadekhlrkvrekiGmvfqsfnlfphktvldnvt.eapvlvkGvaraeaekrav.elldmvGladkadalpaq........lsGGqkqrvaiaralalrpkvllfdevtsaldpelveevlnvlrrlasetdltmllvthemgf.arefadrvlffdkGkiveeG 229
                  v+aG   a++G sGsGk+t+l  l    +  eG+i+        ++   G+         ++++ ++ +v q    f   t+ + ++  a +++   a a+++++ v +l+ ++Gl+  a+++  +        +sGG+++r+ ia  l   p +l+ de+ts ld    + v++ lr+l+++  +t++   h+ +       +r+l+++kG i  +G
  MMETSP1137-20121227|5810_1  91 GVKAGSITAVMGASGSGKTTLLNALSRRGP-CEGQIRY------GQS---GQE------WSKALKRRVAFVEQDDVCFGGLTIKQSLIfSAELRMPADADARTREKKVdDLISILGLSRCANTVVGNasavesrgVSGGERKRLCIATELLTDPALLFCDEPTSGLDSFTAQVVIERLRDLTKQIGITVICSIHQPNSqVFSAFERLLLLHKGSILYHG 293
                 6899******************99876555.4677665......333...433......445677788888888888888888877542677777777777776665525888899887666543211111122389*********************************************************9764134555899999999998777 PP

>> TIGR02633  xylG: D-xylose ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.0   0.0   0.00017     0.011       7     136 ..      75     197 ..      70     204 .. 0.75
   2 !   24.9   0.0     2e-08   1.3e-06     403     481 ..     209     289 ..     198     298 .. 0.87

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 0.00017
   TIGR02633   7 ivkkfggvkaldnidlklraGeivslcGenGaGkstlmkvlsgvyphGtydGeilfegeelkassirdterkGiviihqeltlvkelsvleniflGneitlkGglmdydamvlrakellrelkldasnvt 136
                 +  +++g +al   +  ++aG i ++ G  G+Gk+tl+  ls     G  +G+i + ++    ++ +++ ++ ++ + q+ +    l++ + +++  e+ ++    d  +  +++++l+  l l+   +t
  MMETSP1137-20121227|5810_1  75 LSVTINGTRALLPCSGGVKAGSITAVMGASGSGKTTLLNALSR---RGPCEGQIRYGQSG---QEWSKALKRRVAFVEQDDVCFGGLTIKQSLIFSAELRMPA-DADARTREKKVDDLISILGLSRCANT 197
                 55677788888888999********************998886...56669999997764...5566667777888888888888888888888888887777.55555666666677666666665555 PP

  == domain 2    score: 24.9 bits;  conditional E-value: 2e-08
   TIGR02633 403 rlsGGnqqkavlakllllnprvlildeptrGvd.vGakyeiyklinqlaqeGvaiiv.vsselaevlGlsdrvlvigeGkl 481
                 ++sGG++++  +a  ll++p +l  dept G+d   a+  i +l     q G+++i  +    ++v+   +r+l++++G +
  MMETSP1137-20121227|5810_1 209 GVSGGERKRLCIATELLTDPALLFCDEPTSGLDsFTAQVVIERLRDLTKQIGITVICsIHQPNSQVFSAFERLLLLHKGSI 289
                 68*******************************557899999999888899*9998647777899*************987 PP

>> TIGR01271  CFTR_protein: cystic fibrosis transmembrane conductor regulator (CFTR)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.2   0.0     2e-12   1.3e-10    1228    1411 ..      78     269 ..      63     289 .. 0.82

  Alignments for each domain:
  == domain 1    score: 37.2 bits;  conditional E-value: 2e-12
   TIGR01271 1228 teagravlqdlsfsveagqrvgllgrtgsgkstllsallrllstegeiqi..dgvswns.....vt.lqkwrkafgvip.qkvfilsgtfrknldpyeqysdeeiwkvaeevglksvieqfpdkldfvlvdggyvlsnghkqlmclarsilskakillldepsafldpvtlqiirktlkqafsn..ctvilsehr 1411
                  t +g   l   s  v+ag    ++g +gsgk+tll al r    eg+i+    g  w       v+ +++   +fg +  ++ +i+s  +r+  d  ++  ++++  +   +gl    +   +    v   g   +s g ++ +c+a  +l+   +l+ dep++ ld  t q++   l++   +   tvi s h+
  MMETSP1137-20121227|5810_1   78 TINGTRALLPCSGGVKAGSITAVMGASGSGKTTLLNALSRRGPCEGQIRYgqSGQEWSKalkrrVAfVEQDDVCFGGLTiKQSLIFSAELRMPADADARTREKKVDDLISILGLSRCANTVVGNASAVESRG---VSGGERKRLCIATELLTDPALLFCDEPTSGLDSFTAQVVIERLRDLTKQigITVICSIHQ 269 
                  55666667778999**********************************973357888641111122133445567765515679************************************999988776555...699***********************************9999987655422688888886 PP

>> TIGR01257  rim_protein: rim ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.8   0.0   3.5e-12   2.3e-10     957    1137 ..      96     288 ..      91     305 .. 0.77

  Alignments for each domain:
  == domain 1    score: 35.8 bits;  conditional E-value: 3.5e-12
   TIGR01257  957 qitaflghngagktttlsiltgllpptsgtvlvggkdietnldavrqslgmcpqhnilfhhltvaehilfyaqlkgrsweeaql...emeamledtglhhkrne........eaqdlsgglqrklsvaiafvgdakvvvldeptsgvdpysrrsiwdll..lkyrsgrtiimsthhmdeadl.lgdriaiisqgr 1137
                   ita++g  g+gktt l  l+    p  g +  g    e +  a+++ + ++ q ++ f  lt+ + ++f a+l+  +  +a+    +++ ++   gl    n         e++ +sgg +++l +a  ++ d  ++  deptsg+d ++ + + + l  l  + g t+i s h+ +   +   +r+ ++ +g 
  MMETSP1137-20121227|5810_1   96 SITAVMGASGSGKTTLLNALSR-RGPCEGQIRYGQSGQEWS-KALKRRVAFVEQDDVCFGGLTIKQSLIFSAELRMPADADARTrekKVDDLISILGLSRCANTvvgnasavESRGVSGGERKRLCIATELLTDPALLFCDEPTSGLDSFTAQVVIERLrdLTKQIGITVICSIHQPNSQVFsAFERLLLLHKGS 288 
                  69****************9986.578899999998888876.6889999*************************988777775411134555555666555442222222228999*************************************99998845667899******9986544331235666666655 PP

>> TIGR03719  ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.3   0.0   0.00061      0.04     345     384 ..      92     130 ..      70     147 .. 0.88
   2 !   21.8   0.0   1.9e-07   1.3e-05     160     205 ..     208     253 ..     172     270 .. 0.76

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 0.00061
   TIGR03719 345 lpkggivGviGpnGaGkstlfklitgkekpdsGelkiGet 384
                 + +g+i  v+G+ G+Gk+tl++ ++    p +G+++ G++
  MMETSP1137-20121227|5810_1  92 VKAGSITAVMGASGSGKTTLLNALSR-RGPCEGQIRYGQS 130
                 6789******************9975.5788999999986 PP

  == domain 2    score: 21.8 bits;  conditional E-value: 1.9e-07
   TIGR03719 160 eklsGGekrrvalcrlllekPdlllldePtnhldaesvaWlekflk 205
                   +sGGe++r+ ++  ll++P ll+ dePt  ld+ + + + + l+
  MMETSP1137-20121227|5810_1 208 RGVSGGERKRLCIATELLTDPALLFCDEPTSGLDSFTAQVVIERLR 253
                 4689999999999999999999999999999999876655444444 PP

>> TIGR00630  uvra: excinuclease ABC subunit A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   0.1     0.016       1.1     630     652 ..      92     114 ..      75     120 .. 0.89
   2 !   10.9   0.0   0.00029     0.019     828     886 ..     209     265 ..     201     277 .. 0.64

  Alignments for each domain:
  == domain 1    score: 5.1 bits;  conditional E-value: 0.016
   TIGR00630 630 iplglltvitGvsgsGkstLind 652
                 ++ g +t++ G sgsGk tL+n 
  MMETSP1137-20121227|5810_1  92 VKAGSITAVMGASGSGKTTLLNA 114
                 567899**************985 PP

  == domain 2    score: 10.9 bits;  conditional E-value: 0.00029
   TIGR00630 828 tLsGGeaqrvkLakeLskrstgktlyilDePttGLhfdDikkLlevlqrlvdk.Gntvvv 886
                  +sGGe +r+ +a+eL    t  +l   DePt GL     + ++e l+ l+++ G tv+ 
  MMETSP1137-20121227|5810_1 209 GVSGGERKRLCIATELL---TDPALLFCDEPTSGLDSFTAQVVIERLRDLTKQiGITVIC 265
                 45777777777777775...5566777777777777666666666666666543555554 PP

>> TIGR01194  cyc_pep_trnsptr: cyclic peptide transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   1.4e-05   0.00094     357     548 ..      85     290 ..      76     296 .. 0.74

  Alignments for each domain:
  == domain 1    score: 15.7 bits;  conditional E-value: 1.4e-05
   TIGR01194 357 lGpidlriasGelvyivGenGcGkstliklllGlyipqeGelll..dGeavsd..esrddyrdlfsavfadyylfddlvqpdekkqasldqatt.......ylsrleledkvkvedlnyst..ttdlstGqrkrlalvnayleerpvllldewaadqdpafkrvfyeellpdl.krrGktilvish..ddryfeladrlikladGkvv 548
                 l p    ++ G +  ++G  G Gk+tl+  l     p eG++     G+  s+  + r  + +     f    + + l+   e + ++  +a+t        +s l+l    +   +n s+  +  +s G+rkrl + +  l +  +l  de ++  d    +v   e l dl k+ G t++   h  + + f   +rl+ l +G ++
  MMETSP1137-20121227|5810_1  85 LLPCSGGVKAGSITAVMGASGSGKTTLLNALS-RRGPCEGQIRYgqSGQEWSKalKRRVAFVEQDDVCFGGLTIKQSLIFSAELRMPADADARTrekkvddLISILGLSRCANTVVGNASAveSRGVSGGERKRLCIATELLTDPALLFCDEPTSGLDSFTAQVV-IERLRDLtKQIGITVICSIHqpNSQVFSAFERLLLLHKGSIL 290
                 55666778999****************99875.5789****986224555544124566677777788998888888888777766665555441111111678889988888777777762245699****************999999*****9997666665.566677725669999988883347999999***999999986 PP

>> TIGR00957  MRP_assoc_pro: multi drug resistance-associated protein (MRP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.1   7.5e-06    0.0005    1312    1497 ..      95     289 ..      65     303 .. 0.51

  Alignments for each domain:
  == domain 1    score: 15.4 bits;  conditional E-value: 7.5e-06
   TIGR00957 1312 gekvgivgrtgagkssltlglfrinesaegeiiid..g......l..niakiglhdlrfkltiipqdpvlfsgslrmnldpfsqysdeev...wlalelahlkdfvsalpdkldfecaeggenlsvgqrqlvclarallrktkilvldeataavdletdnliqstir..tqfedctvltiahrlnt..imdytrvlvldkgev 1497
                  g    ++g +g+gk++l  +l r    +eg+i+    g      l   +a +   d+ f    i  + ++fs  lrm  d  ++  +++v      l l+   + v    + ++         +s g+r+ +c+a  ll    +l  de t+ +d  t +++   +r  t+    tv+   h+ n+     + r+l+l kg +
  MMETSP1137-20121227|5810_1   95 GSITAVMGASGSGKTTLLNALSRR-GPCEGQIRYGqsGqewskaLkrRVAFVEQDDVCFGGLTIK-QSLIFSAELRMPADADARTREKKVddlISILGLSRCANTVVGNASAVE------SRGVSGGERKRLCIATELLTDPALLFCDEPTSGLDSFTAQVVIERLRdlTKQIGITVICSIHQPNSqvFSAFERLLLLHKGSI 289 
                  333344555555555555555442.3344444432111000000111123333333333222222.234566667777776666666544110333333333333333333333......33455556777777777777777777777777777777777777777333333456666667766521345677777777776 PP

>> TIGR00929  VirB4_CagE: type IV secretion/conjugal transfer ATPase, VirB4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.1   0.00025     0.016     440     457 ..      98     115 ..      93     118 .. 0.93

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 0.00025
   TIGR00929 440 TlIfGptgsGKTvllnfl 457
                 T+++G++gsGKT+lln l
  MMETSP1137-20121227|5810_1  98 TAVMGASGSGKTTLLNAL 115
                 99**************87 PP

>> TIGR02322  phosphon_PhnN: phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   0.00058     0.038       1      24 [.      95     118 ..      95     128 .. 0.83

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 0.00058
   TIGR02322   1 grlilvvGpsGaGKDtlldlarar 24 
                 g + +v+G+sG+GK tll+++ +r
  MMETSP1137-20121227|5810_1  95 GSITAVMGASGSGKTTLLNALSRR 118
                 56889*************987665 PP

>> TIGR03880  KaiC_arch_3: KaiC domain protein, AF_0351 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.1   0.00098     0.065      10      32 ..      89     111 ..      78     125 .. 0.83

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 0.00098
   TIGR03880  10 gGGliegsvivviGeaGtGkttl 32 
                 +GG+ +gs+++v+G+ G Gkttl
  MMETSP1137-20121227|5810_1  89 SGGVKAGSITAVMGASGSGKTTL 111
                 7********************98 PP

>> TIGR02237  recomb_radB: DNA repair and recombination protein RadB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.1   0.00096     0.063       6      29 ..      89     112 ..      85     125 .. 0.89

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 0.00096
   TIGR02237   6 gGgvergiitqiyGpggsGKtnia 29 
                  Ggv++g it + G  gsGKt++ 
  MMETSP1137-20121227|5810_1  89 SGGVKAGSITAVMGASGSGKTTLL 112
                 69*******************975 PP

>> TIGR00231  small_GTP: small GTP-binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0    0.0012     0.079       7      26 ..      99     118 ..      96     137 .. 0.88

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 0.0012
   TIGR00231   7 vivGhvdvGKstLlnsllkn 26 
                 +++G +++GK+tLln l+++
  MMETSP1137-20121227|5810_1  99 AVMGASGSGKTTLLNALSRR 118
                 59**************9976 PP

>> TIGR00176  mobB: molybdopterin-guanine dinucleotide biosynthesis protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0    0.0013     0.084       1      20 [.      97     116 ..      97     123 .. 0.89

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 0.0013
   TIGR00176   1 vlqivgykdsGKTtlieklv 20 
                 + +++g ++sGKTtl+++l 
  MMETSP1137-20121227|5810_1  97 ITAVMGASGSGKTTLLNALS 116
                 679*************9985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (707 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       259  (0.0631399); expected 82.0 (0.02)
Passed bias filter:                      207  (0.0504632); expected 82.0 (0.02)
Passed Vit filter:                       116  (0.0282789); expected 4.1 (0.001)
Passed Fwd filter:                        62  (0.0151146); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              62  [number of targets reported over threshold]
# CPU time: 1.57u 0.21s 00:00:01.78 Elapsed: 00:00:01.13
# Mc/sec: 818.56
//
Query:       MMETSP1137-20121227|5811_1  [L=369]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.5e-51  171.1   0.1    6.2e-51  170.6   0.1    1.1  1  TIGR00401 msrA: peptide-methionine (S)-S-oxide reductase
     0.0062   14.4   0.2      0.012   13.5   0.1    1.5  1  TIGR03687 pupylate_cterm: ubiquitin-like protein Pup
  ------ inclusion threshold ------
      0.047   11.7   0.0      0.099   10.6   0.0    1.4  1  TIGR00739 yajC: preprotein translocase, YajC subunit


Domain annotation for each model (and alignments):
>> TIGR00401  msrA: peptide-methionine (S)-S-oxide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  170.6   0.1   4.5e-54   6.2e-51       2     148 ..     206     353 ..     205     357 .. 0.93

  Alignments for each domain:
  == domain 1    score: 170.6 bits;  conditional E-value: 4.5e-54
   TIGR00401   2 kitfalGCfWgveklfrkidgvektkvGylngktenPtyeevCsgdtghaevvkveydpkvvsleeLldvffevidPt..tanrqgnDkGtqyrsgiyalsdedekaaeaskerlqesakykkkivteiekaenfyeaeeyhqqylkkn 148
                 ++tfa+GCfWg+e ++++ +gv +t+vGy++g++e+P+y +vC gdtgh+e+v+v +dp  vs+e L d+f+e         n+ gnD+Gtqyr giy++s e+ kaa as e+ q+s   +k+i te+ +a++f+eae+yhqqyl+k 
  MMETSP1137-20121227|5811_1 206 EATFAGGCFWGLELAYQREPGVISTAVGYTQGHVEDPSYAQVCNGDTGHTEAVQVLFDPALVSFERLCDLFWERLGDNryLLNQVGNDRGTQYRHGIYTHSAEQLKAAMASLEKQQAS-APSKPIKTEVLEAKTFWEAEDYHQQYLQKG 353
                 69**********************************************************************9975441156888*****************************9995.5677************************96 PP

>> TIGR03687  pupylate_cterm: ubiquitin-like protein Pup
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   0.1   8.9e-06     0.012      19      33 .]     341     355 ..     332     355 .. 0.89

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 8.9e-06
   TIGR03687  19 NAeeFVrgFVQKGGq 33 
                 +Ae++ +++ QKGGq
  MMETSP1137-20121227|5811_1 341 EAEDYHQQYLQKGGQ 355
                 6*************9 PP

>> TIGR00739  yajC: preprotein translocase, YajC subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   7.2e-05     0.099      37      67 ..     149     179 ..     146     183 .. 0.92

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 7.2e-05
   TIGR00739  37 sLkkGdkVltigGligtvtkiaentiviela 67 
                  Lk G++V  + G+ ++vt+++++ ++i  +
  MMETSP1137-20121227|5811_1 149 GLKAGEQVQLANGMKARVTDVDDEGVTIDAN 179
                 599**********************999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (369 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        89  (0.0216967); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.29u 0.15s 00:00:00.43 Elapsed: 00:00:00.40
# Mc/sec: 1217.60
//
Query:       MMETSP1137-20121227|5812_1  [L=548]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.2e-21   72.7   0.0    7.3e-16   56.4   0.0    2.5  3  TIGR00324 endA: tRNA intron endonuclease


Domain annotation for each model (and alignments):
>> TIGR00324  endA: tRNA intron endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   0.0      0.55   2.3e+03      31      58 ..     175     198 ..     168     212 .. 0.71
   2 !   56.4   0.0   1.8e-19   7.3e-16      80     162 ..     255     337 ..     237     342 .. 0.91
   3 !   13.5   0.0   2.6e-06     0.011     117     162 ..     411     456 ..     406     461 .. 0.81

  Alignments for each domain:
  == domain 1    score: -3.8 bits;  conditional E-value: 0.55
   TIGR00324  31 ledesldlsliEslylldlgamflklkl 58 
                 +  + l lsl E+  ll  g     l+l
  MMETSP1137-20121227|5812_1 175 EAADWLLLSLCEAYHLLAAG----RLRL 198
                 55667779999999999988....4444 PP

  == domain 2    score: 56.4 bits;  conditional E-value: 1.8e-19
   TIGR00324  80 derslvrkYlvYkdlrerGyvvktGikfGadfllYkrgplrdkeHseylvkvldedesidlidlssivRvatgvkKklvlayv 162
                   +++  +Y  Y+ lr  G+ +++G +fGadf lY+  +++++  +  lv+ + ++e++  +dl + vR+ ++v K l+l+ v
  MMETSP1137-20121227|5812_1 255 ASQRFPFEYAAYRSLRGEGWLLRAGAQFGADFALYEPSATPNHAALCALVRAVGHEEPLSWLDLQRHVRLCHQVSKGLLLCDV 337
                 56788899*******************************88888888899******************************976 PP

  == domain 3    score: 13.5 bits;  conditional E-value: 2.6e-06
   TIGR00324 117 gplrdkeHseylvkvldedesidlidlssivRvatgvkKklvlayv 162
                  +++++  +  lv+ + ++e++  +dl + vR+ ++v K l+l+ v
  MMETSP1137-20121227|5812_1 411 SATPNHAALCALVRAVGHEEPLSWLDLQRHVRLCHQVSKGLLLCDV 456
                 4444444445569999***************************976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (548 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       152  (0.0370551); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.16s 00:00:00.52 Elapsed: 00:00:00.49
# Mc/sec: 1476.12
//
Query:       MMETSP1137-20121227|5813_1  [L=208]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (208 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        79  (0.0192589); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.12s 00:00:00.32 Elapsed: 00:00:00.62
# Mc/sec: 442.80
//
Query:       MMETSP1137-20121227|5814_1  [L=646]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.4e-15   53.3   0.1    3.8e-15   52.6   0.0    1.2  1  TIGR03903 TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
    4.4e-06   24.1   0.0      7e-06   23.5   0.0    1.2  1  TIGR03724 arch_bud32: Kae1-associated kinase Bud32


Domain annotation for each model (and alignments):
>> TIGR03903  TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.6   0.0   1.9e-18   3.8e-15      29     183 ..     366     523 ..     354     530 .. 0.83

  Alignments for each domain:
  == domain 1    score: 52.6 bits;  conditional E-value: 1.9e-18
   TIGR03903  29 ialCarLshPnivaL....lDsGeaedgllFavFeyveGrtlrevLa...adGaLpaaetgrLmlqvLDalaaahdaGvvhRDLkPqnimvsaadveshakvLDFGigaLlpgvedadeatltrttevlGsPaYaaPeqLRgepvtaksDlYaWGLivleCL 183
                  a  +r++hP +v+     l + e +   +  v e+ +G  l ++L+   ++ +L+  +  + +     ++ + h+ G++hRDLk  n+ v+ +d   + k+ DFG++  +   +        r +   G+  Y +Pe     p  a+sD Y+ G ++le L
  MMETSP1137-20121227|5814_1 366 AACLQRIKHPGVVRFedvfLHRHENGGCSVHIVMEFCAGGDLIDRLQcrrNELPLTEVKMLEFLSTLCRTMRHVHECGILHRDLKSSNVFVTRNDR--TVKLGDFGLACAGLSSRR--LSASPRRHSRCGTDMYMSPEVEGRKPYGAASDTYSLGCVLLEML 523
                 455589*******9733336678888889*****************93223445555555566777888999*******************99885..689******987666655..56668999**************99******************88 PP

>> TIGR03724  arch_bud32: Kae1-associated kinase Bud32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.5   0.0   3.4e-09     7e-06      72     137 ..     395     472 ..     335     482 .. 0.80

  Alignments for each domain:
  == domain 1    score: 23.5 bits;  conditional E-value: 3.4e-09
   TIGR03724  72 kkivmeyiegkklkdlleekel..........ellkevGelvgklHkagivhgDlttsNiiv..kddklyliDfGLgk 137
                  +ivme   g +l d l+ +++          e+l+++ +++ ++H+ gi+h Dl  sN+ v  +d+++ l DfGL+ 
  MMETSP1137-20121227|5814_1 395 VHIVMEFCAGGDLIDRLQCRRNelpltevkmlEFLSTLCRTMRHVHECGILHRDLKSSNVFVtrNDRTVKLGDFGLAC 472
                 5789999999999888887666678888888899***************************95336777899****85 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (646 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        91  (0.0221843); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.15s 00:00:00.59 Elapsed: 00:00:00.70
# Mc/sec: 1218.07
//
Query:       MMETSP1137-20121227|5815_1  [L=388]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.2e-98  324.9   0.0    9.6e-98  324.6   0.0    1.0  1  TIGR00212 hemC: porphobilinogen deaminase


Domain annotation for each model (and alignments):
>> TIGR00212  hemC: porphobilinogen deaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  324.6   0.0  2.4e-101   9.6e-98       2     291 ..      59     353 ..      58     355 .. 0.97

  Alignments for each domain:
  == domain 1    score: 324.6 bits;  conditional E-value: 2.4e-101
   TIGR00212   2 rigtRgSkLAlaQanlvkeqlkevyp.....eleteiviiktkGdkiqdkplskiggkglFtkeleeallegeiDlaVHSlKDvptvlseglelaavlkRedprDvlvsrkalsleeLpkgakvGtssvRRkaqlkalrpdlkieslRGNvdtRlkkleegeldaiiLaaAGlkRlgledvitevldpeellpavgqGalavevrkddeelkeilkelsdeetavevtaERaflkeleggCsvpigvyaeveenklklkavvlsrdgkevikeekegnkeeakelglevaeellk 291
                 ++gtRgS+LAlaQa + k++l+ ++p     + ++ei+iikt+Gd+++dk l+++ggkglFtkel+ +ll+g++D+ VHS+KDvpt l +g+ l + l+Red rD+ +s k++s ++Lp g+++Gt+s+RR+aql a  p lk++++RGNv+tRl+kleeg +d+++La AGlkR+++ + it vl+ +e+lpav+qGa+++++r++d + ++ l+ l++e+t+v+v +ERafl +l+g+C++pi++ a++ + +l +++ v+++dg+ + +   +g  e+a++lg+e+ eel +
  MMETSP1137-20121227|5815_1  59 KLGTRGSPLALAQAYETKRRLALAFPdeladDSAVEIKIIKTTGDMVLDKALKDVGGKGLFTKELDVQLLNGDVDICVHSMKDVPTWLVPGTILPCNLEREDTRDAWISPKGTSPMDLPAGSVIGTASLRRQAQLLARNPGLKCVNFRGNVQTRLRKLEEGVVDGTLLARAGLKRMDMTEHITTVLEFDEMLPAVAQGAIGIQCREGDXRXINYLAALNHEPTKVAVDCERAFLAALDGNCRTPIAGQARIVDGELLFQGLVAKPDGSVIYETSRAGRPEDAVKLGTEAGEELRA 353
                 89*******************98886322235689****************************************************************************************************************************************************************************************************************************************9999999999999*********999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (388 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        78  (0.0190151); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.29u 0.14s 00:00:00.43 Elapsed: 00:00:00.47
# Mc/sec: 1089.61
//
Query:       MMETSP1137-20121227|5816_1  [L=249]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.8e-53  179.2   0.0    2.2e-53  178.9   0.0    1.0  1  TIGR03633 arc_protsome_A: proteasome endopeptidase complex, archaeal, alpha subunit
    4.5e-16   56.8   0.0    6.9e-16   56.2   0.0    1.2  1  TIGR03634 arc_protsome_B: proteasome endopeptidase complex, archaeal, beta subunit


Domain annotation for each model (and alignments):
>> TIGR03633  arc_protsome_A: proteasome endopeptidase complex, archaeal, alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  178.9   0.0     1e-56   2.2e-53       1     219 [.       6     225 ..       6     234 .. 0.97

  Alignments for each domain:
  == domain 1    score: 178.9 bits;  conditional E-value: 1e-56
   TIGR03633   1 aaYDraitvfsPdGrlyqveYareavkrgttavGiktkegvvlivdkritsklleaesiekifkiDdhvgaataGlvaDarvlidrarveaqvnrltYdepievevlakkvadlkqqytqvGGvrPfGvalliaGvddkearlfetdPsGalleykavaiGagrekvlellekeykedlsldeaielalkalakale.eelkaeevevavveveekkfrk 219
                 ++YD++ t fsPdGr++qveYa +av  + ta+G+++k+gvv+ v+k + sk++ + s  + f++D+h g+a +Gl+aDar++++ ar+e+  +  +Y+  i  +vl  ++a ++ +yt +  vrPfG ++l+a   +++++l+  +PsG  + + a+a+G++++++++ lek   + l+  ea+    k+l+++ +  + k+ e+e++ v  e+k++++
  MMETSP1137-20121227|5816_1   6 TGYDQSTTTFSPDGRVFQVEYASKAVDNSGTAIGVRCKDGVVMGVEKNKLSKMMVEGSNRRXFNVDKHSGMAISGLMADARQVVNHARKESANYYDFYGGDIPGNVLCDRIAGQMHAYTLYWYVRPFGASVLLASYTEDGPQLYAIEPSGLSYRFFATAVGKSKNAAKSALEKLDLSTLTCREAVVEVAKILYAQHDpAKDKPLEIELSWVCDESKRLHS 225
                 59***************************************************************************************************************************************************************************************9999****999878889999****99999888776 PP

>> TIGR03634  arc_protsome_B: proteasome endopeptidase complex, archaeal, beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.2   0.0   3.4e-19   6.9e-16       2     156 ..      35     192 ..      34     202 .. 0.80

  Alignments for each domain:
  == domain 1    score: 56.2 bits;  conditional E-value: 3.4e-19
   TIGR03634   2 tTtvGikvkdgvvlAadkraslgnlvasknvkKvfkiddkialtiaGsvgdaqslvrllkae.aklyelrrkkkisvkalatllsnllkss....kflpflvqllvgGvdeegpklyslDplGsiiedkytatGsGspvalgvLedeYeedlsleeakkl 156
                  T++G+++kdgvv+  +k      +v + + ++ f++d++ +++i+G+++da+++v+  ++e a++y ++ + +i+ + l   ++  ++++     + pf +++l++ + e+gp+ly ++p+G +     ta+G   + a + Le+   + l+++ea+  
  MMETSP1137-20121227|5816_1  35 GTAIGVRCKDGVVMGVEKNKLSKMMV-EGSNRRXFNVDKHSGMAISGLMADARQVVNHARKEsANYYDFY-GGDIPGNVLCDRIAGQMHAYtlywYVRPFGASVLLASYTEDGPQLYAIEPSGLSYRFFATAVGKSKNAAKSALEKLDLSTLTCREAVVE 192
                 59***************987655555.5566889**********************99988725666666.555666666665555555551222356999************************99999***************999999999988754 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (249 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       124  (0.0302292); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.23u 0.18s 00:00:00.41 Elapsed: 00:00:00.45
# Mc/sec: 730.34
//
Query:       MMETSP1137-20121227|5817_1  [L=248]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (248 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        88  (0.0214529); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.12s 00:00:00.34 Elapsed: 00:00:00.38
# Mc/sec: 861.40
//
Query:       MMETSP1137-20121227|5818_1  [L=160]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (160 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       105  (0.0255973); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.17s 00:00:00.35 Elapsed: 00:00:00.35
# Mc/sec: 603.38
//
Query:       MMETSP1137-20121227|5819_1  [L=167]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (167 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        94  (0.0229157); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.18s 00:00:00.36 Elapsed: 00:00:00.28
# Mc/sec: 787.22
//
Query:       MMETSP1137-20121227|5820_1  [L=244]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0026   15.2   0.0        0.1   10.0   0.0    2.1  2  TIGR01262 maiA: maleylacetoacetate isomerase


Domain annotation for each model (and alignments):
>> TIGR01262  maiA: maleylacetoacetate isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.0   0.0   2.4e-05       0.1      46      78 ..      70     102 ..      60     116 .. 0.88
   2 !    3.2   0.0    0.0031        13     153     204 ..     163     216 ..     148     221 .. 0.71

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 2.4e-05
   TIGR01262  46 lNPqelvPtLkidegevltqSlAiieyLeetyp 78 
                   P +++P L++++g  + +S Ai+ yL ++y 
  MMETSP1137-20121227|5820_1  70 AHPFGQIPFLTDEGGVEVFESGAILLYLADKYG 102
                 5799*************************9986 PP

  == domain 2    score: 3.2 bits;  conditional E-value: 0.0031
   TIGR01262 153 fcvGdevtladvcLvpqvynAerf..evdlaqyPtlkrieealaelpafqeahp 204
                 + v  e ++adv + + +     f  + dl++ P + +   ++ae pa+++a  
  MMETSP1137-20121227|5820_1 163 WLVDGEFSVADVAVGAYLNYVPIFfpNADLSKTPNIAAYMLRCAERPAYASAFG 216
                 5555556666666655554444332378*********************99865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (244 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        39  (0.00950756); expected 82.0 (0.02)
Passed bias filter:                       38  (0.00926377); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.21u 0.16s 00:00:00.37 Elapsed: 00:00:00.32
# Mc/sec: 1006.42
//
Query:       MMETSP1137-20121227|5821_1  [L=1113]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1113 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        93  (0.0226719); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.66u 0.15s 00:00:00.81 Elapsed: 00:00:00.53
# Mc/sec: 2771.77
//
Query:       MMETSP1137-20121227|5822_1  [L=60]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        39  (0.00950756); expected 82.0 (0.02)
Passed bias filter:                       35  (0.00853242); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:00.24
# Mc/sec: 329.97
//
Query:       MMETSP1137-20121227|5823_1  [L=261]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (261 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       135  (0.0329108); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.16s 00:00:00.36 Elapsed: 00:00:00.38
# Mc/sec: 906.56
//
Query:       MMETSP1137-20121227|5824_1  [L=271]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (271 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        27  (0.00658216); expected 82.0 (0.02)
Passed bias filter:                       26  (0.00633837); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.15s 00:00:00.36 Elapsed: 00:00:00.32
# Mc/sec: 1117.78
//
Query:       MMETSP1137-20121227|5825_1  [L=632]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (632 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       262  (0.0638713); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.16s 00:00:00.59 Elapsed: 00:00:00.67
# Mc/sec: 1245.03
//
Query:       MMETSP1137-20121227|5826_1  [L=318]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00077   16.7   0.0     0.0031   14.7   0.0    1.9  2  TIGR03843 TIGR03843: conserved hypothetical protein


Domain annotation for each model (and alignments):
>> TIGR03843  TIGR03843: conserved hypothetical protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0     0.075   3.1e+02      30      50 ..     117     137 ..     107     142 .. 0.77
   2 !   14.7   0.0   7.5e-07    0.0031     134     172 ..     246     292 ..     242     297 .. 0.77

  Alignments for each domain:
  == domain 1    score: -1.7 bits;  conditional E-value: 0.075
   TIGR03843  30 eaeavyKPvagErpLwDfPdG 50 
                    +v+KP   E    + P+G
  MMETSP1137-20121227|5826_1 117 DNLCVFKPGDEEPCALNNPKG 137
                 457*****9999888888887 PP

  == domain 2    score: 14.7 bits;  conditional E-value: 7.5e-07
   TIGR03843 134 elrrlavfDvlvNNaDRKggHvlegk....dg....rvygvDhgvtf 172
                 e++r+av+D+ + N+DR gg +l ++    dg    r+  +Dhg ++
  MMETSP1137-20121227|5826_1 246 EVQRIAVLDIRLFNTDRHGGNILVQRspqcDGssqlRLIPIDHGFCL 292
                 689********************876222222222356789999997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (318 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        47  (0.0114578); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.23u 0.16s 00:00:00.39 Elapsed: 00:00:00.44
# Mc/sec: 953.92
//
Query:       MMETSP1137-20121227|5827_1  [L=238]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (238 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       126  (0.0307167); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.16s 00:00:00.38 Elapsed: 00:00:00.52
# Mc/sec: 604.10
//
Query:       MMETSP1137-20121227|5828_1  [L=555]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (555 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       136  (0.0331546); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.13s 00:00:00.51 Elapsed: 00:00:00.51
# Mc/sec: 1436.35
//
Query:       MMETSP1137-20121227|5829_1  [L=188]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0084   12.9   0.1      0.012   12.5   0.1    1.1  1  TIGR02668 moaA_archaeal: probable molybdenum cofactor biosynthesis protein A


Domain annotation for each model (and alignments):
>> TIGR02668  moaA_archaeal: probable molybdenum cofactor biosynthesis protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.5   0.1   2.9e-06     0.012     167     260 ..      68     162 ..      61     166 .. 0.79

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 2.9e-06
   TIGR02668 167 kellelaaeeegailqliElepeeegekelkkyaidikeieeeleekadk.vetrelhnRkkYvidsd.vevevvkpmdnpefCanCtrlRltadG 260
                 ++ll +++e++ a+ qliE + +    +++++  ++++++ +el++  ++ +et  ++ Rk+  ++++ ++  +++  ++p++ ++ t+lR ++ G
  MMETSP1137-20121227|5829_1  68 EKLLTILEESSTAAYQLIEQTRKMVF-AKHEQTGMSVEQVVNELQKDFEQaMETVVFQIRKNHGVNEEqMTKALIEYQSDPTVGKAFTTLREAMSG 162
                 467788888889*******9988855.899999***********9987661566699******999873445678888888888888888876666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (188 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       417  (0.101658); expected 82.0 (0.02)
Passed bias filter:                      260  (0.0633837); expected 82.0 (0.02)
Passed Vit filter:                        19  (0.00463189); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.23u 0.19s 00:00:00.42 Elapsed: 00:00:00.46
# Mc/sec: 539.43
//
Query:       MMETSP1137-20121227|5832_1  [L=240]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (240 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       215  (0.0524135); expected 82.0 (0.02)
Passed bias filter:                      144  (0.0351048); expected 82.0 (0.02)
Passed Vit filter:                        20  (0.00487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.17s 00:00:00.41 Elapsed: 00:00:00.50
# Mc/sec: 633.55
//
Query:       MMETSP1137-20121227|5833_1  [L=70]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        35  (0.00853242); expected 82.0 (0.02)
Passed bias filter:                       31  (0.00755729); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.13s 00:00:00.24 Elapsed: 00:00:00.24
# Mc/sec: 384.97
//
Query:       MMETSP1137-20121227|5834_1  [L=240]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (240 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        84  (0.0204778); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.17s 00:00:00.37 Elapsed: 00:00:00.37
# Mc/sec: 856.15
//
Query:       MMETSP1137-20121227|5835_1  [L=433]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (433 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        94  (0.0229157); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.16s 00:00:00.46 Elapsed: 00:00:00.45
# Mc/sec: 1270.03
//
Query:       MMETSP1137-20121227|5836_1  [L=247]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      1e-21   75.0   0.0    1.5e-21   74.5   0.0    1.2  1  TIGR01126 pdi_dom: protein disulfide-isomerase domain
    1.9e-19   68.4   0.0    2.4e-19   68.0   0.0    1.0  1  TIGR01130 ER_PDI_fam: protein disulfide isomerases
    6.1e-12   43.5   0.0    9.6e-12   42.8   0.0    1.2  1  TIGR01068 thioredoxin: thioredoxin
     0.0059   13.1   0.0     0.0064   13.0   0.0    1.1  1  TIGR00424 APS_reduc: 5'-adenylylsulfate reductase, thioredoxin-independent


Domain annotation for each model (and alignments):
>> TIGR01126  pdi_dom: protein disulfide-isomerase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.5   0.0   1.5e-24   1.5e-21       2     101 ..      67     160 ..      66     163 .. 0.92

  Alignments for each domain:
  == domain 1    score: 74.5 bits;  conditional E-value: 1.5e-24
   TIGR01126   2 vaenfdelvldenkdvlvefyaPWCGhCkklaPeyeklakelkkeeekvkiakvdataekelaskfkvsgfPtlkffkkgkkepvdyeGeReaeelvefv 101
                  ++nf++ v    +++++ fyaPWCG  k+laP++ +la++  +   ++k+a+vd t + +l+++++++gfP l +++++ +  ++++G+ ++e+l++f 
  MMETSP1137-20121227|5836_1  67 YQNNFESEVD--GQATFIMFYAPWCGFSKHLAPTWASLAESSLD---NLKVARVDGTRQLNLMKRYGIKGFPSLLYISEDGQ-LYKFKGQSTLENLTSFA 160
                 5789999998..79999**********************98764...69****************************99995.9************9997 PP

>> TIGR01130  ER_PDI_fam: protein disulfide isomerases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.0   0.0   2.4e-22   2.4e-19       2     103 ..      62     159 ..      61     164 .. 0.90

  Alignments for each domain:
  == domain 1    score: 68.0 bits;  conditional E-value: 2.4e-22
   TIGR01130   2 evleltkenfddlikenelvLveFYAPWCGHCksLaPeYekAAeelkkkspkvklakvDateekelaqkygvsGyPtLkifrngesssdYnGpReaegivky 103
                  ++ l ++nf++ +  + ++ ++FYAPWCG  k+LaP +++ Ae   +   ++k+a+vD+t + +l ++yg++G+P+L +++++ +  +++G+ + e+++++
  MMETSP1137-20121227|5836_1  62 RIVDLYQNNFESEVDGQ-ATFIMFYAPWCGFSKHLAPTWASLAESSLD---NLKVARVDGTRQLNLMKRYGIKGFPSLLYISEDGQLYKFKGQSTLENLTSF 159
                 589999********875.66789****************999986333...479****************************9999*******999988876 PP

>> TIGR01068  thioredoxin: thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.8   0.0   9.3e-15   9.6e-12       3      94 ..      68     157 ..      66     161 .. 0.89

  Alignments for each domain:
  == domain 1    score: 42.8 bits;  conditional E-value: 9.3e-15
   TIGR01068   3 eenfeetvassdklvlvDfwAeWCgpCkmlaPvleelakeleekvkvvKlnvdeeqeiaakygirsiPtlllfkngkevkrvvGakpkaalk 94 
                 ++nfe++v  +  +  + f+A+WCg  k laP+ + la++  +++kv++++   + ++ ++ygi+  P ll + ++ +  +  G  + ++l+
  MMETSP1137-20121227|5836_1  68 QNNFESEVDGQ--ATFIMFYAPWCGFSKHLAPTWASLAESSLDNLKVARVDGTRQLNLMKRYGIKGFPSLLYISEDGQLYKFKGQSTLENLT 157
                 56788888775..68899*******************************************************9999999999988777665 PP

>> TIGR00424  APS_reduc: 5'-adenylylsulfate reductase, thioredoxin-independent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   0.0   6.2e-06    0.0064     366     437 ..      71     139 ..      18     161 .. 0.79

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 6.2e-06
   TIGR00424 366 lkleerkeawlvvlyapwcpfcqameasyvelaeklagsgvkvakfradgdqkefakqelqlgsfptillfp 437
                 +  e   +a ++++yapwc f + +  ++  lae    +  kva  r dg ++    +   ++ fp++l++ 
  MMETSP1137-20121227|5836_1  71 FESEVDGQATFIMFYAPWCGFSKHLAPTWASLAESSL-DNLKVA--RVDGTRQLNLMKRYGIKGFPSLLYIS 139
                 455666778999*********************9744.456776..67888777777778888888877665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (247 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        68  (0.0165773); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.23u 0.16s 00:00:00.39 Elapsed: 00:00:00.39
# Mc/sec: 835.93
//
Query:       MMETSP1137-20121227|5837_1  [L=230]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.3e-18   62.8   0.6    1.2e-17   62.1   0.4    1.3  1  TIGR00741 yfiA: ribosomal subunit interface protein


Domain annotation for each model (and alignments):
>> TIGR00741  yfiA: ribosomal subunit interface protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.1   0.4     3e-21   1.2e-17       6     100 ..      23     126 ..      20     128 .. 0.90

  Alignments for each domain:
  == domain 1    score: 62.1 bits;  conditional E-value: 3e-21
   TIGR00741   6 rgknveitealreyveeklar.lerylkeiievdvvlsveknrrrq.......fkvevtvklkgg.viraeeesedlYaAidkaldkLerqLrklkekrkekir 100
                 +g++++ t+al +y ++k+ + lery++ + ++ ++++ve+  + +       + +e+t+   +  vir e++s+d+Ya++dk+ d+L r Lrk+k++ ++k++
  MMETSP1137-20121227|5837_1  23 TGNDLTLTPALSKYANDKVGKyLERYDDVLQSASLQMKVEHRGHDRehqgldaHIAEITATCVDKqVIRVEQSSDDMYASLDKLSDRLGRVLRKYKDRKNSKRS 126
                 79******************************9999988887765568899988899998876656*********************************99975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (230 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       155  (0.0377864); expected 82.0 (0.02)
Passed bias filter:                      118  (0.0287665); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.22u 0.21s 00:00:00.43 Elapsed: 00:00:00.46
# Mc/sec: 659.95
//
Query:       MMETSP1137-20121227|5838_1  [L=285]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0045   15.2   0.3      0.012   13.7   0.2    1.7  1  TIGR02811 formate_TAT: formate dehydrogenase region TAT target


Domain annotation for each model (and alignments):
>> TIGR02811  formate_TAT: formate dehydrogenase region TAT target
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   0.2     3e-06     0.012       5      35 ..      81     112 ..      79     123 .. 0.84

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 3e-06
   TIGR02811   5 qkadlsRRdLL.kglavgaaagavaaatgrva 35 
                  ++d+sRR+LL  g++v+aa + + aat   +
  MMETSP1137-20121227|5838_1  81 DATDVSRRSLLvTGVTVAAALSTAPAATYAEG 112
                 578******98569*******99999996655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (285 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        60  (0.014627); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.22u 0.16s 00:00:00.38 Elapsed: 00:00:00.35
# Mc/sec: 1074.77
//
Query:       MMETSP1137-20121227|5839_1  [L=266]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (266 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.15s 00:00:00.37 Elapsed: 00:00:00.45
# Mc/sec: 780.20
//
Query:       MMETSP1137-20121227|5840_1  [L=141]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (141 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        88  (0.0214529); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.16s 00:00:00.33 Elapsed: 00:00:00.23
# Mc/sec: 809.15
//
Query:       MMETSP1137-20121227|5841_1  [L=245]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (245 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        66  (0.0160897); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.13s 00:00:00.34 Elapsed: 00:00:00.40
# Mc/sec: 808.43
//
Query:       MMETSP1137-20121227|5842_1  [L=304]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (304 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       109  (0.0265724); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.16s 00:00:00.41 Elapsed: 00:00:00.32
# Mc/sec: 1253.90
//
Query:       MMETSP1137-20121227|5844_1  [L=167]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.6e-13   47.6   0.6    5.5e-13   46.6   0.0    1.6  2  TIGR01622 SF-CC1: splicing factor, CC1-like family
    5.4e-12   43.8   0.0    6.3e-12   43.5   0.0    1.1  1  TIGR01661 ELAV_HUD_SF: ELAV/HuD family splicing factor
    1.7e-11   41.1   0.0      2e-11   40.9   0.0    1.1  1  TIGR01642 U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor
    1.6e-10   38.6   0.0    2.2e-10   38.1   0.0    1.1  1  TIGR01628 PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family
    9.3e-09   32.4   0.0    1.4e-08   31.8   0.0    1.2  1  TIGR01645 half-pint: poly-U binding splicing factor, half-pint family
    4.3e-08   31.0   0.0    4.8e-08   30.8   0.0    1.1  1  TIGR01659 sex-lethal: sex-lethal family splicing factor
    1.1e-06   25.5   0.2    3.3e-06   24.0   0.0    1.7  2  TIGR01648 hnRNP-R-Q: hnRNP-R, Q splicing factor family
    2.6e-06   24.5   0.0      3e-06   24.3   0.0    1.0  1  TIGR01649 hnRNP-L_PTB: hnRNP-L/PTB/hephaestus splicing factor family


Domain annotation for each model (and alignments):
>> TIGR01622  SF-CC1: splicing factor, CC1-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.1       0.2     1e+02     294     345 ..      16      69 ..      10      82 .. 0.53
   2 !   46.6   0.0   1.1e-15   5.5e-13     218     295 ..      78     155 ..      68     164 .. 0.92

  Alignments for each domain:
  == domain 1    score: -0.5 bits;  conditional E-value: 0.2
   TIGR01622 294 glasD.vteesdaslaskfedsfdeseqsgldlnteere..qldekldrddekgs 345
                   ++D v+ee++a+  s+++    + +   +++++++++  q+d k d  d  g+
  MMETSP1137-20121227|5844_1  16 DIGDDeVMEETTAAPPSRKQT-ARDAAGRRTKGRGPANSsmQDDGKFDTIDSRGG 69 
                 556665666666644444444.355555555555554441144444454444444 PP

  == domain 2    score: 46.6 bits;  conditional E-value: 1.1e-15
   TIGR01622 218 adlkLYvGnlhfnitEqeLrqiFepFGeielvqlqkDpetGrskGyGFiqFsdaeeakeAleklNGlelAGReikvgl 295
                     +++ nlh +  E+++++ F  FGei+++ l++D  tG  kGy  ++++ ++ea+ A+ ++NG  l G eikv  
  MMETSP1137-20121227|5844_1  78 EGWIIFITNLHEETQEDDVHDKFCEFGEIKNLHLNLDRRTGFVKGYALVEYESLKEAQGAIDNMNGETLMGAEIKVDW 155
                 5556899*********************************************************************86 PP

>> TIGR01661  ELAV_HUD_SF: ELAV/HuD family splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.5   0.0   1.2e-14   6.3e-12     245     343 ..      53     154 ..      21     161 .. 0.80

  Alignments for each domain:
  == domain 1    score: 43.5 bits;  conditional E-value: 1.2e-14
   TIGR01661 245 splaadgavaglaa..gaqiaasdgagycifvynlspdtde.avlqlfgpfGavqsvkiirdlttnkckGygfvsmtnydeaalailslnGytlgnrvlqvs 343
                 s +  dg+  ++ +  ga  +a++  g+ if+ nl  +t+e  v   f +fG ++++ +  d +t   kGy++v     +ea  ai  +nG tl +  ++v 
  MMETSP1137-20121227|5844_1  53 SSMQDDGKFDTIDSrgGAAGPAKSVEGWIIFITNLHEETQEdDVHDKFCEFGEIKNLHLNLDRRTGFVKGYALVEYESLKEAQGAIDNMNGETLMGAEIKVD 154
                 45555555555543114555668889************97615779***********************************************988777765 PP

>> TIGR01642  U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.9   0.0   3.8e-14     2e-11     299     373 ..      82     156 ..      44     163 .. 0.89

  Alignments for each domain:
  == domain 1    score: 40.9 bits;  conditional E-value: 3.8e-14
   TIGR01642 299 lyignLPldlkddqvkeLLesFGdLkaFnliKdlatGlsKGyaFceykdssvtdlAiaaLnGiklgdkkLnvkrA 373
                 ++i nL  + ++d v++   +FG++k   l  d+ tG  KGya +ey+    ++ Ai  +nG +l +  ++v  A
  MMETSP1137-20121227|5844_1  82 IFITNLHEETQEDDVHDKFCEFGEIKNLHLNLDRRTGFVKGYALVEYESLKEAQGAIDNMNGETLMGAEIKVDWA 156
                 9**************************************************************999999988776 PP

>> TIGR01628  PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.1   0.0   4.3e-13   2.2e-10      91     163 ..      82     155 ..      73     166 .. 0.82

  Alignments for each domain:
  == domain 1    score: 38.1 bits;  conditional E-value: 4.3e-13
   TIGR01628  91 ifvKnLdksidnkaLfdtFskfGnilsckvatde.eGkSkgYgfvhfedeesAkeAieklNgvllndkevyvgk 163
                 if+ nL ++ ++  ++d F +fG+i    +  d  +G  kgY+ v++e  + A+ Ai+++Ng  l   e++v+ 
  MMETSP1137-20121227|5844_1  82 IFITNLHEETQEDDVHDKFCEFGEIKNLHLNLDRrTGFVKGYALVEYESLKEAQGAIDNMNGETLMGAEIKVDW 155
                 79999999999999999999999999999988853799999999999999999999999999999998888874 PP

>> TIGR01645  half-pint: poly-U binding splicing factor, half-pint family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.8   0.0   2.7e-11   1.4e-08     114     179 ..      88     154 ..      76     162 .. 0.90

  Alignments for each domain:
  == domain 1    score: 31.8 bits;  conditional E-value: 2.7e-11
   TIGR01645 114 sfelkedtlrrafdPfGPiksinmsWdpvtqkhkgfafve.evPeaallaleqmngallGGrnlkvg 179
                   e +ed +   f  fG ik + +  d  t+  kg+a+ve e    a+ a ++mng  l G ++kv+
  MMETSP1137-20121227|5844_1  88 HEETQEDDVHDKFCEFGEIKNLHLNLDRRTGFVKGYALVEyESLKEAQGAIDNMNGETLMGAEIKVD 154
                 558899**********************************9999999******************97 PP

>> TIGR01659  sex-lethal: sex-lethal family splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.8   0.0   9.4e-11   4.8e-08      95     184 ..      67     156 ..      25     163 .. 0.84

  Alignments for each domain:
  == domain 1    score: 30.8 bits;  conditional E-value: 9.4e-11
   TIGR01659  95 sggsddndtrasgtnlivnylpqdmtdrelyalfrtigpintcrimrdyktgysfgyafvdfaseadsqraikslngitvrnkrlkvsya 184
                  gg+ +   + +g  + +  l ++ ++ +++  f   g i    +  d +tg+  gya+v++ s  ++q ai+++ng t+    +kv +a
  MMETSP1137-20121227|5844_1  67 RGGAAGPAKSVEGWIIFITNLHEETQEDDVHDKFCEFGEIKNLHLNLDRRTGFVKGYALVEYESLKEAQGAIDNMNGETLMGAEIKVDWA 156
                 35555666666677777888999999*************************************************************987 PP

>> TIGR01648  hnRNP-R-Q: hnRNP-R, Q splicing factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0      0.22   1.1e+02     297     326 ..      21      52 ..      14      71 .. 0.62
   2 !   24.0   0.0   6.5e-09   3.3e-06     235     303 ..      81     155 ..      73     159 .. 0.80

  Alignments for each domain:
  == domain 1    score: -0.9 bits;  conditional E-value: 0.22
   TIGR01648 297 seievtlakPvdkesyvryt..kaakgrgkea 326
                 + +e t a P+ +++ +r    + +kgrg   
  MMETSP1137-20121227|5844_1  21 EVMEETTAAPPSRKQTARDAagRRTKGRGPAN 52 
                 66777888888888777754113345544333 PP

  == domain 2    score: 24.0 bits;  conditional E-value: 6.5e-09
   TIGR01648 235 ilyvrnlmletteeiieksfsef...kpGave...rvkkirdyafvhfedredavkamdelnGkeleGseievtl 303
                 i+++ nl  et e+ ++ +f ef   k   ++   r   ++ ya+v +e+ ++a  a+d++nG+ l G ei v  
  MMETSP1137-20121227|5844_1  81 IIFITNLHEETQEDDVHDKFCEFgeiKNLHLNldrRTGFVKGYALVEYESLKEAQGAIDNMNGETLMGAEIKVDW 155
                 89***********999987766611144333233366779*******************************9865 PP

>> TIGR01649  hnRNP-L_PTB: hnRNP-L/PTB/hephaestus splicing factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.3   0.0   5.9e-09     3e-06     253     369 ..      36     154 ..      13     166 .. 0.78

  Alignments for each domain:
  == domain 1    score: 24.3 bits;  conditional E-value: 5.9e-09
   TIGR01649 253 alaplalgdraglaaglapsreslalasaalapaisstapaasglgsVllvsnLeeekvtpdalFnlfgvYGdvervkilknk.....ketalvemadpqqaqlalthLdkvklfgkklrva 369
                 ++ ++a + r+   ++ + s++ +  +++  + +    +pa s  g ++++ nL+ee  + d +   f+ +G+++ + +   +     k+ alve+   ++aq a++ +++  l g +++v 
  MMETSP1137-20121227|5844_1  36 TARDAAGR-RTKGRGPANSSMQDDGKFDTIDS-RGGAAGPAKSVEGWIIFITNLHEET-QEDDVHDKFCEFGEIKNLHLNLDRrtgfvKGYALVEYESLKEAQGAIDNMNGETLMGAEIKVD 154
                 44444444.44446666777777777777776.888899999999*********9986.6799**************99654323333789****************************995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (167 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        73  (0.0177962); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         8  (0.00195027); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.23u 0.17s 00:00:00.40 Elapsed: 00:00:00.37
# Mc/sec: 595.73
//
Query:       MMETSP1137-20121227|5845_1  [L=403]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (403 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        67  (0.0163335); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.12s 00:00:00.41 Elapsed: 00:00:00.40
# Mc/sec: 1329.79
//
Query:       MMETSP1137-20121227|5846_1  [L=262]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (262 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       104  (0.0253535); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.14s 00:00:00.35 Elapsed: 00:00:00.34
# Mc/sec: 1017.09
//
Query:       MMETSP1137-20121227|5847_1  [L=300]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (300 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        86  (0.0209654); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.17s 00:00:00.40 Elapsed: 00:00:00.47
# Mc/sec: 842.48
//
Query:       MMETSP1137-20121227|5848_1  [L=379]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.4e-34  115.7   0.0    1.1e-33  115.0   0.0    1.4  1  TIGR02349 DnaJ_bact: chaperone protein DnaJ
    3.8e-21   73.0   1.4    5.2e-21   72.6   1.0    1.1  1  TIGR03835 termin_org_DnaJ: terminal organelle assembly protein TopJ
    7.8e-07   27.2   0.2    1.4e-06   26.3   0.1    1.3  1  TIGR00714 hscB: Fe-S protein assembly co-chaperone HscB


Domain annotation for each model (and alignments):
>> TIGR02349  DnaJ_bact: chaperone protein DnaJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  115.0   0.0   7.9e-37   1.1e-33       1     108 [.       4     138 ..       4     155 .. 0.76

  Alignments for each domain:
  == domain 1    score: 115.0 bits;  conditional E-value: 7.9e-37
   TIGR02349   1 dYYeiLgvskdAseeeikkAYrklakkyHPDrnkg.....ekeaeekfkeineAyevLsdeekraqYDqfghagleggagg.......ggagfegfea.......................sefgd..igdifeeffgggggsgr 108
                 d+Y+iLg+s++A+ eeikkAYrkla kyHPD++ +     +++ae+kfk ++eAy+ Lsd+ekr+ YDqfg++gl+gg+ +       g        +                        +  +   ++if++ffggg  +g 
  MMETSP1137-20121227|5848_1   4 DFYNILGISRSATPEEIKKAYRKLAVKYHPDKHGQdspkeKEAAEQKFKAVSEAYDTLSDPEKRKLYDQFGKEGLNGGMPTggtsgmgG--------MggmggmggfgpgvrvhvsgggagMD--NarAEEIFRSFFGGGDPFGG 138
                 9******************************9965555547889********************************9876644443331........12345556666677777766654333..25599999999998765444 PP

>> TIGR03835  termin_org_DnaJ: terminal organelle assembly protein TopJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.6   1.0   3.8e-24   5.2e-21       3      72 ..       4      79 ..       2      82 .. 0.88

  Alignments for each domain:
  == domain 1    score: 72.6 bits;  conditional E-value: 3.8e-24
   TIGR03835  3 DyyevLgidrDadeqeikkafrkLakkyhPDrn.....ka.adaakifaeineandvLsnPkkraryDkyGhDGvD 72
                D+y++Lgi+r a  +eikka+rkLa kyhPD+      k+   a++ f+ + ea+d Ls+P+kr+ yD++G +G++
  MMETSP1137-20121227|5848_1  4 DFYNILGISRSATPEEIKKAYRKLAVKYHPDKHgqdspKEkEAAEQKFKAVSEAYDTLSDPEKRKLYDQFGKEGLN 79
                9*****************************9863222244346899****************************97 PP

>> TIGR00714  hscB: Fe-S protein assembly co-chaperone HscB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.3   0.1     1e-09   1.4e-06       8      54 ..      20      68 ..      16      70 .. 0.90

  Alignments for each domain:
  == domain 1    score: 26.3 bits;  conditional E-value: 1e-09
   TIGR00714  8 LrkryrklQkqyHPD..vsksaqeqaaalqqStelNqAykTLkdplkRa 54
                ++k yrkl ++yHPD    +s +e+ aa q+   + +Ay TL dp kR 
  MMETSP1137-20121227|5848_1 20 IKKAYRKLAVKYHPDkhGQDSPKEKEAAEQKFKAVSEAYDTLSDPEKRK 68
                7899***********8767788999********************9985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (379 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       144  (0.0351048); expected 82.0 (0.02)
Passed bias filter:                      106  (0.0258411); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.32u 0.13s 00:00:00.45 Elapsed: 00:00:00.62
# Mc/sec: 806.84
//
Query:       MMETSP1137-20121227|5849_1  [L=339]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      4e-06   24.3   1.6    5.5e-06   23.8   1.1    1.1  1  TIGR01933 hflK: HflK protein
    0.00086   16.0   3.3      0.016   11.9   0.9    2.2  2  TIGR01932 hflC: HflC protein


Domain annotation for each model (and alignments):
>> TIGR01933  hflK: HflK protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.8   1.1   2.7e-09   5.5e-06      13     190 ..      58     239 ..      47     271 .. 0.81

  Alignments for each domain:
  == domain 1    score: 23.8 bits;  conditional E-value: 2.7e-09
   TIGR01933  13 lrfGkys.rvlepGlnlkipfieevykvnvekvrelakeglmltkDenivevelnvqYk..isd.pakyl.fkvenaedslrqatdsalreviGdssldeiltegRsairedtkeelneildsydlGitvvdvnlqsarpPeevkeAFddviaAredeer..l.ineaeayanevvPkarGeAqri 190
                  rfG  + rv + G ++ +p+ ++ +  +v++      +++   kD+ +v+++l v  +  ++  p+ y  +  ++ e +l  + + +l++v+ +++  +++t  R+a++ +++  l +   + d  i + dv + +    +e  +A +    A ++ er  + +++a+++++ ++ +a+GeA++ 
  MMETSP1137-20121227|5849_1  58 HRFGGVQqRVRAEGTHIIVPWFQRAIDYDVRAKPR-MIQSMTGSKDLQMVNISLRVLSRpeVAHlPQIYReLGTDYDERVLPSIVNEVLKAVVAQYNAAQLITM-REAVSRKIRALLVQR--AADFHIVLDDVSITHLSFGKEYTAAVEAKQVAAQEAERarFiVDKAKQEKRSTMIRAEGEAKSA 239
                 4888776155578************9999987554.45777889************98844443377885367888889************************9.*********999775..556678899******************999998887773332589***************9864 PP

>> TIGR01932  hflC: HflC protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    3.8   0.0    0.0022       4.6      46     145 ..      66     163 ..      48     180 .. 0.64
   2 !   11.9   0.9   7.6e-06     0.016     239     297 ..     205     264 ..     162     284 .. 0.70

  Alignments for each domain:
  == domain 1    score: 3.8 bits;  conditional E-value: 0.0022
   TIGR01932  46 lvyeaGLhvkiPliesvkildak.....iqtvDgeadrivtkekk..dlivdtyikWrieDfkkyYlatgggnisaAevlikrkiedrlRseigklelkeivrssrd 145
                 +v   G h+ +P +++   +d +     iq + g       k+ +  ++ +   ++  ++ + + Y  +g     + e  + ++++++l++++++++  ++++  ++
  MMETSP1137-20121227|5849_1  66 RVRAEGTHIIVPWFQRAIDYDVRakprmIQSMTGS------KDLQmvNISLRVLSRPEVAHLPQIYRELG---TDYDERVLPSIVNEVLKAVVAQYNAAQLITMREA 163
                 45567777777777765555544111113333333......33331145556677888888888999988...5667888899999999999999999998876554 PP

  == domain 2    score: 11.9 bits;  conditional E-value: 7.6e-06
   TIGR01932 239 elrakaekEvvk.iLseAe..reariikgegdaeaAklysdayskdpeFysFlrsLeaYeks 297
                 ++ a  e E+++ i+ +A+  +++++i++eg+a+ A+l  da   +p + + lr Lea +++
  MMETSP1137-20121227|5849_1 205 QVAA-QEAERARfIVDKAKqeKRSTMIRAEGEAKSAQLIGDAVRDNPGYIQ-LRRLEAAREI 264
                 2323.345554426666651156779******************9998665.6667776554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (339 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       242  (0.0589956); expected 82.0 (0.02)
Passed bias filter:                      126  (0.0307167); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.31u 0.17s 00:00:00.48 Elapsed: 00:00:00.61
# Mc/sec: 733.51
//
Query:       MMETSP1137-20121227|5850_1  [L=410]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (410 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       103  (0.0251097); expected 82.0 (0.02)
Passed bias filter:                       97  (0.023647); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.15s 00:00:00.43 Elapsed: 00:00:00.44
# Mc/sec: 1229.90
//
Query:       MMETSP1137-20121227|5851_1  [L=261]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (261 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       119  (0.0290102); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.15s 00:00:00.37 Elapsed: 00:00:00.39
# Mc/sec: 883.31
//
Query:       MMETSP1137-20121227|5852_1  [L=196]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (196 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        94  (0.0229157); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.15s 00:00:00.34 Elapsed: 00:00:00.50
# Mc/sec: 517.40
//
Query:       MMETSP1137-20121227|5853_1  [L=332]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (332 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       114  (0.0277913); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.16s 00:00:00.41 Elapsed: 00:00:00.38
# Mc/sec: 1153.17
//
Query:       MMETSP1137-20121227|5854_1  [L=336]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (336 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        79  (0.0192589); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.16s 00:00:00.42 Elapsed: 00:00:00.35
# Mc/sec: 1267.10
//
Query:       MMETSP1137-20121227|5855_1  [L=1081]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.2e-88  294.6   0.0    2.4e-66  222.3   0.0    2.6  2  TIGR00376 TIGR00376: putative DNA helicase
    4.7e-08   29.2   0.1    9.8e-05   18.3   0.0    3.0  3  TIGR01448 recD_rel: helicase, RecD/TraA family
    7.4e-06   22.6   0.1     0.0002   17.9   0.0    2.1  2  TIGR01447 recD: exodeoxyribonuclease V, alpha subunit
  ------ inclusion threshold ------
      0.042    9.9   0.0      0.077    9.1   0.0    1.4  1  TIGR01075 uvrD: DNA helicase II


Domain annotation for each model (and alignments):
>> TIGR00376  TIGR00376: putative DNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.5   0.0   4.3e-23   4.5e-20     154     252 ..     422     523 ..     389     533 .. 0.84
   2 !  222.3   0.0   2.3e-69   2.4e-66     334     633 ..     530     826 ..     527     830 .. 0.89

  Alignments for each domain:
  == domain 1    score: 69.5 bits;  conditional E-value: 4.3e-23
   TIGR00376 154 aidknLnesqkeAvkfAvsskdlaliHGPpGtGktrtlvEl....irqevkkgkrvLvtaesniavDnllErlakldlkivRlGHPaRllkslkrhsLdalie 252
                  +  nLn sq++Av  A s+  l+l+ GPpGtGkt+    +    +r  v    ++L+t++sniavDnll  l+++ ++ vRlG P  +  +l r  +++  e
  MMETSP1137-20121227|5855_1 422 ELAANLNPSQRRAVVAAASN-RLTLVQGPPGTGKTKVALTVldawVRCRVAGTDKILATSDSNIAVDNLLAGLVEMGVRAVRLGRPDNVRPELLRYCVEYTGE 523
                 45689*********999998.9*************8555541112556666667*************************************999999888766 PP

  == domain 2    score: 222.3 bits;  conditional E-value: 2.3e-69
   TIGR00376 334 aeerivdeileesdvvlstnssaaleilk..eFDvvviDEasqAlepsvliPlvkar.klilAGDhkqLPPtvlsed..aeeLektLferlikkypersklLnvqYRmnekimefpskefYngklkAdesvanillrdlvkeeateveedledkiPllfidtsglelleakekdstskynegEvelvkeiikeLvklg.vpeeeigvisPYdaqvdllrkll.eekkidiEvssvDGFqGREkeviilslvRsnrkgevGFLkdlRRlnvaltRarRklivigdsevlk...ankvlkrlieyvkkkgev 633
                 +e + +++ +++++v+ +t    ++e l+  +F  v++DEa+qA+e+s l+ l ++  + +l GD+ qLPPtv+s++  a+   + Lf rl+++ +  ++lL+ qYRm++++ + ps+ fY g++    + +++     ++  a +     e + P+ f+          +e + tsk n+ E++ +   + +L+ +g ++  +ig+isPY aq +llr +l  e   ++EvssvDGFqGREkevii s vR+n++ge+GFL d RR nvaltR rR +ivig  ++l    +n++++r+ +++++ g v
  MMETSP1137-20121227|5855_1 530 SEFQARQRAIRDAQVICATCIGVGSESLDriKFRAVLVDEATQATEASTLVSLCRSTaQAVLVGDQCQLPPTVVSQQqeAQRAARPLFSRLVDE-GVPVHLLDTQYRMHPALSQLPSDLFYAGRISDGVTSRERP---PPRGFAWP-----EASSPVAFVPMLNG----SEETEGTSKINRAEARQAAALVSDLLYAGeLRPSDIGLISPYAAQARLLRSMLrGEVGAQVEVSSVDGFQGREKEVIIFSCVRANNRGELGFLSDARRANVALTRGRRGMIVIGHANTLAmsgNNSCWARWLQWARSCGLV 826
                 5567788999*****************99999***********************9879****************8877888999*******98.677***************************8765555443...34444444.....5667****986443....4578889************999999877549*******************999656779************************************************************9888999*********998866 PP

>> TIGR01448  recD_rel: helicase, RecD/TraA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.0   9.5e-08   9.8e-05     318     364 ..     421     467 ..     405     479 .. 0.89
   2 !    6.2   0.0   0.00043      0.44     412     458 ..     557     601 ..     550     609 .. 0.86
   3 ?    0.4   0.0     0.024        25     683     709 ..     786     812 ..     750     820 .. 0.83

  Alignments for each domain:
  == domain 1    score: 18.3 bits;  conditional E-value: 9.5e-08
   TIGR01448 318 kklelelseeqkealktaiqdkvviltGGPGtGKtTvtkaiielaee 364
                 ++l  +l+ +q+ a+ +a++++++++ G PGtGKt v  ++++ +++
  MMETSP1137-20121227|5855_1 421 EELAANLNPSQRRAVVAAASNRLTLVQGPPGTGKTKVALTVLDAWVR 467
                 677889********************************999998776 PP

  == domain 2    score: 6.2 bits;  conditional E-value: 0.00043
   TIGR01448 412 edkidadllivDEvsmvdtwllssllaavpddarlllvGDadqLPsV 458
                  d+i+ + ++vDE +   +  +s l++   + a+ +lvGD+ qLP+ 
  MMETSP1137-20121227|5855_1 557 LDRIKFRAVLVDEATQATE--ASTLVSLCRSTAQAVLVGDQCQLPPT 601
                 6789999999***987666..69999*******************84 PP

  == domain 3    score: 0.4 bits;  conditional E-value: 0.024
   TIGR01448 683 TalTRakkklvlvGskeAldiavkrkk 709
                  alTR+++ ++++G+++ l+++ +++ 
  MMETSP1137-20121227|5855_1 786 VALTRGRRGMIVIGHANTLAMSGNNSC 812
                 59***************9999877665 PP

>> TIGR01447  recD: exodeoxyribonuclease V, alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.0     2e-07    0.0002     141     189 ..     421     467 ..     396     479 .. 0.80
   2 !    2.3   0.0    0.0099        10     266     303 ..     565     600 ..     557     605 .. 0.75

  Alignments for each domain:
  == domain 1    score: 17.9 bits;  conditional E-value: 2e-07
   TIGR01447 141 enlfplleeenlqkvavalalksnfslitGGPGTGKTttvarlllalik 189
                 e+l ++l+ ++ +  av  a++++++l+ G PGTGKT ++  +l a + 
  MMETSP1137-20121227|5855_1 421 EELAANLNPSQ-R-RAVVAAASNRLTLVQGPPGTGKTKVALTVLDAWVR 467
                 66777777777.4.48888999*****************9999988765 PP

  == domain 2    score: 2.3 bits;  conditional E-value: 0.0099
   TIGR01447 266 lvvDEaSMvdlelmakLlealkketkLIllGDknQLas 303
                 ++vDEa    ++    L++  + +++ +l+GD+ QL++
  MMETSP1137-20121227|5855_1 565 VLVDEATQ--ATEASTLVSLCRSTAQAVLVGDQCQLPP 600
                 56777764..33345566777888999**********9 PP

>> TIGR01075  uvrD: DNA helicase II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   0.0   7.5e-05     0.077       3      63 ..     425     487 ..     423     517 .. 0.74

  Alignments for each domain:
  == domain 1    score: 9.1 bits;  conditional E-value: 7.5e-05
   TIGR01075   3 dglndkqreavaaplenllvla..GaGsGktrvlvhri.awllsveevseysimavtftnkaaa 63 
                  +ln+ qr av a+ +n l l     G+Gkt+v  + + aw+ +   + +  i+a + +n a  
  MMETSP1137-20121227|5855_1 425 ANLNPSQRRAVVAAASNRLTLVqgPPGTGKTKVALTVLdAWV-RCRVAGTDKILATSDSNIAVD 487
                 579********999999887752147******9666552664.566677777777777776655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1081 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       198  (0.0482691); expected 82.0 (0.02)
Passed bias filter:                      144  (0.0351048); expected 82.0 (0.02)
Passed Vit filter:                        39  (0.00950756); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.91u 0.19s 00:00:01.10 Elapsed: 00:00:00.85
# Mc/sec: 1678.59
//
Query:       MMETSP1137-20121227|5858_1  [L=219]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (219 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        23  (0.00560702); expected 82.0 (0.02)
Passed bias filter:                       22  (0.00536324); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.15s 00:00:00.32 Elapsed: 00:00:00.27
# Mc/sec: 1070.58
//
Query:       MMETSP1137-20121227|5859_1  [L=261]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (261 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       106  (0.0258411); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.16s 00:00:00.38 Elapsed: 00:00:00.32
# Mc/sec: 1076.54
//
Query:       MMETSP1137-20121227|5860_1  [L=274]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (274 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       106  (0.0258411); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.17s 00:00:00.41 Elapsed: 00:00:00.34
# Mc/sec: 1063.68
//
Query:       MMETSP1137-20121227|5862_1  [L=296]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.5e-68  226.9   0.0    5.5e-68  226.6   0.0    1.1  1  TIGR01351 adk: adenylate kinases
    2.2e-35  119.9   0.1    2.5e-31  106.6   0.0    2.2  2  TIGR01360 aden_kin_iso1: adenylate kinase
    4.7e-32  109.2   0.0    1.2e-28   98.1   0.0    2.1  2  TIGR01359 UMP_CMP_kin_fam: UMP-CMP kinase family
    7.6e-06   23.5   0.0    0.00035   18.1   0.0    2.2  2  TIGR03263 guanyl_kin: guanylate kinase
    0.00058   17.7   0.0     0.0012   16.7   0.0    1.5  1  TIGR02173 cyt_kin_arch: putative cytidylate kinase
     0.0018   15.8   0.0     0.0034   14.9   0.0    1.4  1  TIGR00017 cmk: cytidylate kinase
     0.0082   13.7   0.2       0.45    8.0   0.0    2.5  2  TIGR00041 DTMP_kinase: thymidylate kinase


Domain annotation for each model (and alignments):
>> TIGR01351  adk: adenylate kinases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  226.6   0.0   9.4e-71   5.5e-68       1     211 [.      94     295 ..      94     296 .] 0.94

  Alignments for each domain:
  == domain 1    score: 226.6 bits;  conditional E-value: 9.4e-71
   TIGR01351   1 rlvllGpPGsGKGTqakrlaeklglvhistGdllRaevkkktelgkkakeylekGklvpdeiviklvkerleeeedeekgfiLDGfPRtleQaeaLdelleelglkldavielkvpdevlverisgRricpkcgkvynlkfkkpkvecddctaellkqReDDteevvkkRlevYkeqteplieyYkkkgklveidaekkieevlkeileal 211
                 ++++ G+P+sGKGTq++ l+e++glvh+stGd+lRa+vk++te+g+ ak y+e+G+lvpde++i +vk+rl+e++ +e+g++LDGfPRt eQa+aL ++    g++ ++v++l+vpde+l+er+ gRr++p++gk+y+lkf++p+   d + a +l+qR+DDtee  + Rl++++++++ + + Y+  g++  +d++k+ +ev++e+++ l
  MMETSP1137-20121227|5862_1  94 KIIICGAPASGKGTQCELLKEEYGLVHLSTGDMLRAAVKAETEVGMAAKGYMERGELVPDEVIIGIVKDRLAESDCKENGWLLDGFPRTEEQAKALAAA----GIEPTKVLYLQVPDEMLIERVVGRRLDPETGKIYHLKFAPPE--SD-EVAARLTQRSDDTEEKARVRLQAFHKHMSAVESCYT--GIISYVDGTKPKTEVFAELQKSL 295
                 589**********************************************************************9999********************75....789**************************************4..55.45568888***************************7..567778999999***99999876 PP

>> TIGR01360  aden_kin_iso1: adenylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  106.6   0.0   4.3e-34   2.5e-31       5     127 ..      94     216 ..      90     222 .. 0.97
   2 !   11.2   0.0   7.9e-05     0.046     129     184 ..     241     294 ..     237     296 .] 0.87

  Alignments for each domain:
  == domain 1    score: 106.6 bits;  conditional E-value: 4.3e-34
   TIGR01360   5 iifivGGpGsGkGtqcekivekyGfthlssGdllreevasgsergkklqaimekGelvpldvvldllkeallkalekskGflidGyprevkqGeefekriaeaklvlyldvsedtlvkrllkr 127
                  i i G p sGkGtqce + e yG+ hls+Gd+lr+ v++++e g   +  me+Gelvp +v++ ++k+ l ++  k +G+l+dG+pr  +q + + +   e++ vlyl+v ++ l++r++ r
  MMETSP1137-20121227|5862_1  94 KIIICGAPASGKGTQCELLKEEYGLVHLSTGDMLRAAVKAETEVGMAAKGYMERGELVPDEVIIGIVKDRLAESDCKENGWLLDGFPRTEEQAKALAAAGIEPTKVLYLQVPDEMLIERVVGR 216
                 57899**********************************************************************************************99******************9987 PP

  == domain 2    score: 11.2 bits;  conditional E-value: 7.9e-05
   TIGR01360 129 etsarvddnektikkrletykkatepvieyyeskgkllkinaegtvddvflevvaa 184
                 + + r dd+e+  + rl++++k  ++v   y +  ++  ++  +   +vf+e+ ++
  MMETSP1137-20121227|5862_1 241 RLTQRSDDTEEKARVRLQAFHKHMSAVESCYTG--IISYVDGTKPKTEVFAELQKS 294
                 55679**************************87..899999999999999988665 PP

>> TIGR01359  UMP_CMP_kin_fam: UMP-CMP kinase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.1   0.0   2.1e-31   1.2e-28       3     127 ..      96     217 ..      94     225 .. 0.94
   2 !    9.2   0.0   0.00039      0.23     131     184 ..     244     295 ..     234     296 .] 0.90

  Alignments for each domain:
  == domain 1    score: 98.1 bits;  conditional E-value: 2.1e-31
   TIGR01359   3 fvlGgPGsGkGtqCakiveefkfvhlsaGdllreeikregseegelieslikeGkivPsevtvellekaikese.eskkflidGfPrneenleaweklidekvevkfvlfldcseevmvkrllkrg 127
                  + G+P sGkGtqC+ + ee++ vhls+Gd+lr+++k  + e g   + +++ G++vP ev + ++++++ es+ +++ +l+dGfPr ee  +a     +  +e++ vl+l++++e++++r++ r 
  MMETSP1137-20121227|5862_1  96 IICGAPASGKGTQCELLKEEYGLVHLSTGDMLRAAVK-AETEVGMAAKGYMERGELVPDEVIIGIVKDRLAESDcKENGWLLDGFPRTEEQAKALA---AAGIEPTKVLYLQVPDEMLIERVVGRR 217
                 578**********************************.669*****************************999878999************99988...5579*******************9985 PP

  == domain 2    score: 9.2 bits;  conditional E-value: 0.00039
   TIGR01359 131 Grvddnieslkkrletykeetlpvieyfekknkvkkidaeksveevfeevekif 184
                  r+dd +e  + rl+ ++++   v   +   + +  +d++k+  evf+e++k++
  MMETSP1137-20121227|5862_1 244 QRSDDTEEKARVRLQAFHKHMSAVESCYT--GIISYVDGTKPKTEVFAELQKSL 295
                 699*******************9999996..7899***************9987 PP

>> TIGR03263  guanyl_kin: guanylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.0     0.022        13       4      38 ..      95     129 ..      93     138 .. 0.81
   2 !   18.1   0.0     6e-07   0.00035     117     157 ..     229     269 ..     208     279 .. 0.85

  Alignments for each domain:
  == domain 1    score: 3.2 bits;  conditional E-value: 0.022
   TIGR03263   4 ivisgpsGvGKstlvkklleekeelklsvSattRk 38 
                 i+i+g+ + GK+t ++ l ee   ++ls     R+
  MMETSP1137-20121227|5862_1  95 IIICGAPASGKGTQCELLKEEYGLVHLSTGDMLRA 129
                 7999999*********9999988888887665555 PP

  == domain 2    score: 18.1 bits;  conditional E-value: 6e-07
   TIGR03263 117 filppsleeLeeRlkkRgtdseeviekRlekAkkelkaaee 157
                   +pp+ +e+  Rl++R++d+ee+ + Rl++ +k ++a+e+
  MMETSP1137-20121227|5862_1 229 KFAPPESDEVAARLTQRSDDTEEKARVRLQAFHKHMSAVES 269
                 468*********************************99876 PP

>> TIGR02173  cyt_kin_arch: putative cytidylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0     2e-06    0.0012       3      42 ..      95     134 ..      93     156 .. 0.85

  Alignments for each domain:
  == domain 1    score: 16.7 bits;  conditional E-value: 2e-06
   TIGR02173   3 ivisGpPGsGkttvakilaeklslklisaGkirelaekkg 42 
                 i+i G P sGk t  + l e+++l ++s+G++   a k +
  MMETSP1137-20121227|5862_1  95 IIICGAPASGKGTQCELLKEEYGLVHLSTGDMLRAAVKAE 134
                 99****************************9877666554 PP

>> TIGR00017  cmk: cytidylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   5.8e-06    0.0034       4      40 ..      94     130 ..      91     142 .. 0.91

  Alignments for each domain:
  == domain 1    score: 14.9 bits;  conditional E-value: 5.8e-06
   TIGR00017   4 iiaiDGPsaaGKstvakalaeklgykyldsGalYRvl 40 
                  i i G  a+GK+t +  l e+ g+ +l++G + R+ 
  MMETSP1137-20121227|5862_1  94 KIIICGAPASGKGTQCELLKEEYGLVHLSTGDMLRAA 130
                 68899******************************86 PP

>> TIGR00041  DTMP_kinase: thymidylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.0     0.019        11       7      28 ..      95     116 ..      94     140 .. 0.89
   2 !    8.0   0.0   0.00077      0.45     124     151 ..     191     218 ..     158     288 .. 0.89

  Alignments for each domain:
  == domain 1    score: 3.5 bits;  conditional E-value: 0.019
   TIGR00041   7 iviEGidGaGKTtqlellkkll 28 
                 i+i G   +GK tq+ellk+ +
  MMETSP1137-20121227|5862_1  95 IIICGAPASGKGTQCELLKEEY 116
                 67889999**********9865 PP

  == domain 2    score: 8.0 bits;  conditional E-value: 0.00077
   TIGR00041 124 alqlkPdlvilLdidpevalerlskrge 151
                 a++++P +v++L++++e   er+ +r+ 
  MMETSP1137-20121227|5862_1 191 AAGIEPTKVLYLQVPDEMLIERVVGRRL 218
                 34489******************99986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (296 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       126  (0.0307167); expected 82.0 (0.02)
Passed bias filter:                      118  (0.0287665); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.29u 0.18s 00:00:00.47 Elapsed: 00:00:00.50
# Mc/sec: 781.38
//
Query:       MMETSP1137-20121227|5863_1  [L=55]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        64  (0.0156021); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.15s 00:00:00.28 Elapsed: 00:00:00.28
# Mc/sec: 259.26
//
Query:       MMETSP1137-20121227|5864_1  [L=456]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (456 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       100  (0.0243784); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.16s 00:00:00.48 Elapsed: 00:00:00.33
# Mc/sec: 1823.85
//
Query:       MMETSP1137-20121227|5865_1  [L=387]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (387 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       255  (0.0621648); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.13s 00:00:00.41 Elapsed: 00:00:00.52
# Mc/sec: 982.30
//
Query:       MMETSP1137-20121227|5866_1  [L=961]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.4e-12   44.6   0.0      4e-12   43.9   0.0    1.2  1  TIGR01388 rnd: ribonuclease D
  ------ inclusion threshold ------
      0.047   11.3   0.0        0.1   10.2   0.0    1.5  1  TIGR00011 YbaK_EbsC: YbaK/EbsC protein


Domain annotation for each model (and alignments):
>> TIGR01388  rnd: ribonuclease D
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.9   0.0     2e-15     4e-12     109     164 ..     241     296 ..     235     326 .. 0.92

  Alignments for each domain:
  == domain 1    score: 43.9 bits;  conditional E-value: 2e-15
   TIGR01388 109 gesvgydklVkevleveldKsesrtDWlaRPLtdkqleYAaaDVtyLlelyekLse 164
                 g s+g ++  ++ ++ +ldK e+ +DW +RPL+ +ql+YAaaD   L+ l+++L++
  MMETSP1137-20121227|5866_1 241 GVSIGLAAQLQKWTGQSLDKHEQTSDWSRRPLSARQLSYAAADAACLVTLHDALRA 296
                 78999999*********************************************986 PP

>> TIGR00011  YbaK_EbsC: YbaK/EbsC protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   4.9e-05       0.1      33     137 ..     502     609 ..     489     623 .. 0.78

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 4.9e-05
   TIGR00011  33 eklgvdeeevf.KTLvleldkkklvvavipvdeeldlkklAkalg..ekkvemidlkdaekvtGYvrGGisPlGqkkklptyidesakqletilvsaGkrGlqielap 137
                 ++++ ++ + + K + + +++ + v+ ++p +e+ld++ lA++lg   ++v+++ l++ ++    v+G + P+   ++++++   + ++ +++  saG  G +  +++
  MMETSP1137-20121227|5866_1 502 SHVDSESARTLrKSVRAIATRGACVLLLVPSTERLDMRWLANVLGvpRRRVRLASLAECTRDFNAVVGYVPPIPLCRNVRVLAMPQLARASRLRASAGGGGRSXLISA 609
                 5555555443315666666777788999***************99556999****99999999999999999999999999998899999999999998888776665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (961 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       124  (0.0302292); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.57u 0.14s 00:00:00.71 Elapsed: 00:00:00.66
# Mc/sec: 1921.84
//
Query:       MMETSP1137-20121227|5867_1  [L=133]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.013   11.4   0.1      0.018   10.9   0.0    1.3  1  TIGR00870 trp: transient-receptor-potential calcium channel protein


Domain annotation for each model (and alignments):
>> TIGR00870  trp: transient-receptor-potential calcium channel protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   4.3e-06     0.018     129     158 ..      35      64 ..       3      84 .. 0.81

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 4.3e-06
   TIGR00870 129 tkgitalilAihkqnyeivklLlekgasve 158
                  +g+tal +A++      v+ L++ ga++e
  MMETSP1137-20121227|5867_1  35 AVGQTALAMAAEAGHASAVRCLVDAGADIE 64 
                 479*************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (133 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       144  (0.0351048); expected 82.0 (0.02)
Passed bias filter:                      103  (0.0251097); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.18u 0.11s 00:00:00.28 Elapsed: 00:00:00.39
# Mc/sec: 450.12
//
Query:       MMETSP1137-20121227|5868_1  [L=725]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (725 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       134  (0.032667); expected 82.0 (0.02)
Passed bias filter:                      106  (0.0258411); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.21s 00:00:00.67 Elapsed: 00:00:00.73
# Mc/sec: 1310.85
//
Query:       MMETSP1137-20121227|5869_1  [L=160]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (160 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       357  (0.0870307); expected 82.0 (0.02)
Passed bias filter:                      164  (0.0399805); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.16s 00:00:00.36 Elapsed: 00:00:00.35
# Mc/sec: 603.38
//
Query:       MMETSP1137-20121227|5870_1  [L=610]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (610 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        61  (0.0148708); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.16s 00:00:00.56 Elapsed: 00:00:00.59
# Mc/sec: 1364.63
//
Query:       MMETSP1137-20121227|5871_1  [L=282]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (282 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        98  (0.0238908); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.15s 00:00:00.38 Elapsed: 00:00:00.43
# Mc/sec: 865.60
//
Query:       MMETSP1137-20121227|5872_1  [L=529]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (529 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        99  (0.0241346); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.14s 00:00:00.48 Elapsed: 00:00:00.52
# Mc/sec: 1342.74
//
Query:       MMETSP1137-20121227|5873_1  [L=194]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (194 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        48  (0.0117016); expected 82.0 (0.02)
Passed bias filter:                       42  (0.0102389); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.15s 00:00:00.35 Elapsed: 00:00:00.32
# Mc/sec: 800.18
//
Query:       MMETSP1137-20121227|5874_1  [L=103]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.019   12.4   0.6      0.022   12.2   0.4    1.1  1  TIGR00145 TIGR00145: FTR1 family protein


Domain annotation for each model (and alignments):
>> TIGR00145  TIGR00145: FTR1 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.4   5.3e-06     0.022      30      84 ..      10      71 ..       6      88 .. 0.72

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 5.3e-06
   TIGR00145 30 kraqrtklkivvwvGvlagvaislaigig.vigaygslekee......keLlegilgviavv 84
                + a + + + +vw G+ a++ ++++ig+  v+ a+  ++  +        +l++i+ v  +v
  MMETSP1137-20121227|5874_1 10 AHADVSEYQWIVWFGAFAAFFAAFGIGANdVANAFATSVGSKaltikqACILAAIFEVAGAV 71
                5688889999*****************96477777766655445555444555555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (103 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       165  (0.0402243); expected 82.0 (0.02)
Passed bias filter:                      118  (0.0287665); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.15u 0.14s 00:00:00.29 Elapsed: 00:00:00.35
# Mc/sec: 388.43
//
Query:       MMETSP1137-20121227|5875_1  [L=250]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.7e-34  115.8   0.2    4.4e-34  115.5   0.1    1.0  1  TIGR03634 arc_protsome_B: proteasome endopeptidase complex, archaeal, beta subunit
    8.5e-16   56.2   0.5    1.1e-15   55.8   0.4    1.1  1  TIGR03690 20S_bact_beta: proteasome, beta subunit
    2.9e-15   54.2   0.0    4.6e-15   53.5   0.0    1.2  1  TIGR03633 arc_protsome_A: proteasome endopeptidase complex, archaeal, alpha subunit
    0.00066   17.3   0.1     0.0016   16.0   0.1    1.6  2  TIGR03692 ATP_dep_HslV: ATP-dependent protease HslVU, peptidase subunit


Domain annotation for each model (and alignments):
>> TIGR03634  arc_protsome_B: proteasome endopeptidase complex, archaeal, beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  115.5   0.1   4.3e-37   4.4e-34       1     185 []      51     235 ..      51     235 .. 0.97

  Alignments for each domain:
  == domain 1    score: 115.5 bits;  conditional E-value: 4.3e-37
   TIGR03634   1 gtTtvGikvkdgvvlAadkraslgnlvasknvkKvfkiddkialtiaGsvgdaqslvrllkaeaklyelrrkkkisvkalatllsnllksskflpflvqllvgGvde.egpklyslDplGsiiedkytatGsGspvalgvLedeYeedlsleeakklavkaiksaieRDvasGdgidvvvitkdgv 185
                 gt ++ ++ + gv+l ad+r s g ++a++ ++Kv+kid+ki +  +Gs +d q++ ++ +  ++  ++  ++   v ++a++  +l +++k    ++ +lv+G d  +g ++ys+   G+++e  +t  GsGs + +g  ++ Y+++++ e+ ++ +++a+  a++RD  sG  +++v+i++ gv
  MMETSP1137-20121227|5875_1  51 GTSIMAVTYEGGVILGADSRTSTGVYIANRVTNKVTKIDEKIYVCRSGSAADTQAISDYARYFLDNHRMAYGQAPKVATAANIFQQLCYKNKN-NLTAGILVAGWDGsKGGQVYSIPVGGAMLERPFTIGGSGSSYIYGFCDSYYKPNMTREQCEEFVTRALCHAMARDGSSGGVVRLVIIDETGV 235
                 68899999***********************************************************************************99.8999********8688******9999999999********************************************************9885 PP

>> TIGR03690  20S_bact_beta: proteasome, beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.8   0.4   1.1e-18   1.1e-15       4     183 ..      50     223 ..      47     236 .. 0.91

  Alignments for each domain:
  == domain 1    score: 55.8 bits;  conditional E-value: 1.1e-18
   TIGR03690   4 hgttivalaykgGvllaGdrratqGnliasrdvekvfkadeysavgiaGtaglavelvklfqvelehyekieGvplslegkanrlaamvrsnlaaalqGlavvpllvGydleaekGrifsydvvggkeeeeeyesvGsGsvfakgalkklykedlseedavrvavealydaadddsatGG 183
                  gt+i+a++y+gGv+l  d r+++G  ia+r  +kv k de   v  +G+a+ +  +    +  l+ +    G+   +++ an + ++  +n +    G+    l++G+d + + G+++s  v g+   e+ ++  GsGs +  g     yk+++++e+  + + +al  a   d ++GG
  MMETSP1137-20121227|5875_1  50 LGTSIMAVTYEGGVILGADSRTSTGVYIANRVTNKVTKIDEKIYVCRSGSAADTQAISDYARYFLDNHRMAYGQAPKVATAANIFQQLCYKNKNNLTAGI----LVAGWDGS-KGGQVYSIPVGGAML-ERPFTIGGSGSSYIYGFCDSYYKPNMTREQCEEFVTRALCHAMARDGSSGG 223
                 59*************************************************99998888888999******************99999999998888887....569***86.5699***98766655.5689**************************************999999998 PP

>> TIGR03633  arc_protsome_A: proteasome endopeptidase complex, archaeal, alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.5   0.0   4.5e-18   4.6e-15      29     212 ..      51     232 ..      45     244 .. 0.83

  Alignments for each domain:
  == domain 1    score: 53.5 bits;  conditional E-value: 4.5e-18
   TIGR03633  29 gttavGiktkegvvlivdkritsk.lleaesiekifkiDdhvgaataGlvaDarvlidrarveaqvnrltYdepievevlakkvadlkqqytqvGGvrPfGvalliaGvddk.earlfetdPsGalleykavaiGagrekvlellekeykedlsldeaielalkalakale.eelkaeevevavvev 212
                 gt+ + + ++ gv+l +d r+ +   + ++  +k+ kiD+++ ++ +G +aD++++ d+ar     +r+ Y+++ +v + a     + qq   +         +l+aG d + + ++++   +Ga+le   +  G+g++ +  + ++ yk +++ +++ e+  +al +a+  +  +   v + ++++
  MMETSP1137-20121227|5875_1  51 GTSIMAVTYEGGVILGADSRTSTGvYIANRVTNKVTKIDEKIYVCRSGSAADTQAISDYARYFLDNHRMAYGQAPKVATAAN----IFQQLC-YKNKNNLTAGILVAGWDGSkGGQVYSIPVGGAMLERPFTIGGSGSSYIYGFCDSYYKPNMTREQCEEFVTRALCHAMArDGSSGGVVRLVIIDE 232
                 77788999**********998765167777889*******************************************987654....444433.23345677889******875789************999999********************************999872444445555655554 PP

>> TIGR03692  ATP_dep_HslV: ATP-dependent protease HslVU, peptidase subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.1   1.6e-06    0.0016       1      67 [.      52     117 ..      52     130 .. 0.88
   2 ?   -3.5   0.0       1.6   1.6e+03     123     151 ..     180     210 ..     176     214 .. 0.63

  Alignments for each domain:
  == domain 1    score: 16.0 bits;  conditional E-value: 1.6e-06
   TIGR03692   1 ttilavrkngkvviagdGqvtlgetvlkenarkvrrlyegkvlaGfaGstadaltLferfeekleey 67 
                 t i+av  +g v++++d + + g  +  + ++kv ++ ++k+ +  +Gs+ad+ ++ +     l+++
  MMETSP1137-20121227|5875_1  52 TSIMAVTYEGGVILGADSRTSTGVYIANRVTNKVTKI-DEKIYVCRSGSAADTQAISDYARYFLDNH 117
                 78**********************************8.56899999******999888766666665 PP

  == domain 2    score: -3.5 bits;  conditional E-value: 1.6
   TIGR03692 123 GsGgnyalaaarall..eetelsaeeiaeka 151
                 GsG++y +  + +++  + t  + ee +++a
  MMETSP1137-20121227|5875_1 180 GSGSSYIYGFCDSYYkpNMTREQCEEFVTRA 210
                 7888888877777663234555556666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (250 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       146  (0.0355924); expected 82.0 (0.02)
Passed bias filter:                      135  (0.0329108); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.22u 0.16s 00:00:00.38 Elapsed: 00:00:00.40
# Mc/sec: 824.93
//
Query:       MMETSP1137-20121227|5876_1  [L=353]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00022   18.5   0.0     0.0003   18.1   0.0    1.1  1  TIGR03413 GSH_gloB: hydroxyacylglutathione hydrolase
  ------ inclusion threshold ------
       0.04   10.6   0.1      0.059   10.1   0.1    1.1  1  TIGR03224 benzo_boxA: benzoyl-CoA oxygenase/reductase, BoxA protein


Domain annotation for each model (and alignments):
>> TIGR03413  GSH_gloB: hydroxyacylglutathione hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.0   1.5e-07    0.0003      23     154 ..     149     299 ..     137     317 .. 0.66

  Alignments for each domain:
  == domain 1    score: 18.1 bits;  conditional E-value: 1.5e-07
   TIGR03413  23 vvvDpgeaepvlealeekglkleaillTHhH..aDH...vggvaellekfp.vkvvgpaee.ripgltkevk.egdevellelevevlevpGHtlgHiayyleee.....kvlFcgDtLfsaG.CGrl.....fegtaeqmleslqklaaL 154
                 v+vD+++ +  l+a  e+   ++ +llTH    aDH    +   ++++ ++ ++v gp++  +i++ ++e++ +gd      + +ev+++pGH +g ++++++ +     +vlF+gD L   G  Grl     +  + +   +s++kla+L
  MMETSP1137-20121227|5876_1 149 VMVDSPRYNSKLAARLEELGGVDLMLLTHMDdvADHnrwAERFPKMRRLMHaTDVRGPDSWpHIDMRNVEIQvAGDGPWHPVAGIEVVHTPGHSRGSLSFLVDGRlsggeSVLFTGDHLALSGrLGRLdgfarYGHDLALQAKSIDKLADL 299
                 5666666555555544455566778888864225661113455566666667889999988867666666653466666677889******************88999999*******965552688755222223334445666666666 PP

>> TIGR03224  benzo_boxA: benzoyl-CoA oxygenase/reductase, BoxA protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.1   2.9e-05     0.059       9      58 ..      41      95 ..      34     106 .. 0.78

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 2.9e-05
   TIGR03224  9 peicircntceetcpidaithddrnyvvkadvcn.....aclacvspcptgaidn 58
                 e ci c+tc    p      d + yv    +       + la +  cptg+i +
  MMETSP1137-20121227|5876_1 41 DESCIDCDTCRWLAPDTFGRADGKSYVHSQPKSSsstmlTALAALVACPTGSIRT 95
                689************999999******8765544111115679999******965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (353 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        81  (0.0197465); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.28u 0.13s 00:00:00.41 Elapsed: 00:00:00.43
# Mc/sec: 1083.54
//
Query:       MMETSP1137-20121227|5877_1  [L=352]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.032   11.0   0.0      0.045   10.5   0.0    1.2  1  TIGR02024 FtcD: glutamate formiminotransferase


Domain annotation for each model (and alignments):
>> TIGR02024  FtcD: glutamate formiminotransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   1.1e-05     0.045     140     238 ..     138     240 ..     132     275 .. 0.74

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 1.1e-05
   TIGR02024 140 airkgeyealkeklkeakWkPdfGPsevnpkaGatavGa..rkfliafnvnldtsnleiakkiakavrekggGlklvkai....gleleeknlvqvsinlvnyek 238
                 a+r g ye lk++l  + W+   G   ++++a + +v a  r++l      ++t     a   a +v   +gGl+ v a     gl+l  +++   sinl+ ye+
  MMETSP1137-20121227|5877_1 138 AVRMGAYEVLKKQLAAQPWEMPAGALVFVASALSVVVSAsvRSPLDMIKTQVQTGAAGSAA-AAIRVAVGSGGLSAVSAFyrgaGLTL-LRDVPFFSINLLLYEQ 240
                 89****************************9999999875577777766666655544433.23344556788887765422115555.3677777888887775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (352 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       120  (0.029254); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.27u 0.15s 00:00:00.42 Elapsed: 00:00:00.36
# Mc/sec: 1290.56
//
Query:       MMETSP1137-20121227|5878_1  [L=229]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.7e-68  225.9   1.5    8.9e-68  225.7   1.0    1.0  1  TIGR01008 rpsC_E_A: ribosomal protein S3
    1.5e-12   45.6   0.5    1.9e-12   45.2   0.3    1.1  1  TIGR01009 rpsC_bact: ribosomal protein S3


Domain annotation for each model (and alignments):
>> TIGR01008  rpsC_E_A: ribosomal protein S3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  225.7   1.0   4.3e-71   8.9e-68       2     194 ..       8     211 ..       7     212 .. 0.96

  Alignments for each domain:
  == domain 1    score: 225.7 bits;  conditional E-value: 4.3e-71
   TIGR01008   2 erkfvkeglkrlkideflkkeleeaGysgvdvrktplgtkviifaerpglviGrrGrrireltellkk..kfglenpqieveevenpeldakvqaekiaralerGlhfrrvayaavrrimeaGakGvevtisGkltseraktekfadGylvksGepaeelvdkgtaiallkkGvlGvkvkimrpdvk.........lpDeveik 194
                 +rkfv++g++ ++++e l++el+e+Gysgv+vr+tp+ t+vii+a+r++ v+G++Grrirelt +++k  +f  + +++++e+v n+ l a++q e+++ +l  Gl++rr+ y++vr +me+GakGve +++Gk++++rak++kf+dGy++ksGep  ++vd++++++ l++G+lGv+v im p            lpD+v ++
  MMETSP1137-20121227|5878_1   8 KRKFVADGVFFAELNELLTRELAEDGYSGVEVRVTPMRTEVIIRATRTQNVLGEKGRRIRELTAVVQKrwNFTENSVELYAEKVANRGLCAVAQCESLRYKLIGGLAVRRACYGVVRFVMESGAKGVECVVAGKIRGARAKSMKFTDGYMIKSGEPKRQYVDTAVRHVALRQGMLGVRVTIMLPHDPtgktgpktpLPDQVLVQ 211
                 89******************************************************************77778888999*******************************************************************************************************8876557788888899998876 PP

>> TIGR01009  rpsC_bact: ribosomal protein S3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.2   0.3   9.4e-16   1.9e-12      39     204 ..      21     189 ..       7     195 .. 0.92

  Alignments for each domain:
  == domain 1    score: 45.2 bits;  conditional E-value: 9.4e-16
   TIGR01009  39 irellkkelkkasiseveiereadkvevtihtarPglvigkkgkeieklkkelkklvgs..kevkinikevkkpeldaklvaeeiakqlekRvsfRkamkkaiqkalkagakGvkvkvsGRlaGaeiaRselykeGrvPLh..tlRadiDYalaeakttyGvigvkvWif 204
                 + ell++el++ + s ve++ +  + ev+i ++r + v+g+kg+ i +l++ ++k  +   ++v++  ++v +  l a    e++  +l    + R+a    ++ ++++gakGv   v+G++ Ga  a+s  +++G +  +    R  +D a++++    G++gv+v i 
  MMETSP1137-20121227|5878_1  21 LNELLTRELAEDGYSGVEVRVTPMRTEVIIRATRTQNVLGEKGRRIRELTAVVQKRWNFteNSVELYAEKVANRGLCAVAQCESLRYKLIGGLAVRRACYGVVRFVMESGAKGVECVVAGKIRGAR-AKSMKFTDGYMIKSgePKRQYVDTAVRHVALRQGMLGVRVTIM 189
                 5678999999*********************************************998756889999999**9999999999******************************************97.888899999996641168999******************9885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (229 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       102  (0.0248659); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.21u 0.14s 00:00:00.35 Elapsed: 00:00:00.39
# Mc/sec: 775.01
//
Query:       MMETSP1137-20121227|5879_1  [L=246]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (246 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        73  (0.0177962); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.14s 00:00:00.34 Elapsed: 00:00:00.34
# Mc/sec: 954.98
//
Query:       MMETSP1137-20121227|5880_1  [L=443]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (443 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       163  (0.0397367); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.18s 00:00:00.50 Elapsed: 00:00:00.42
# Mc/sec: 1392.17
//
Query:       MMETSP1137-20121227|5881_1  [L=730]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (730 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       291  (0.070941); expected 82.0 (0.02)
Passed bias filter:                       34  (0.00828864); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.19s 00:00:00.63 Elapsed: 00:00:00.43
# Mc/sec: 2240.75
//
Query:       MMETSP1137-20121227|5882_1  [L=402]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (402 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        88  (0.0214529); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.16s 00:00:00.44 Elapsed: 00:00:00.41
# Mc/sec: 1294.14
//
Query:       MMETSP1137-20121227|5883_1  [L=398]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     4e-135  448.5   2.9   4.8e-135  448.2   2.0    1.0  1  TIGR01242 26Sp45: 26S proteasome subunit P45 family
    7.1e-76  253.8   0.3    1.1e-75  253.1   0.2    1.2  1  TIGR01241 FtsH_fam: ATP-dependent metallopeptidase HflB
    2.3e-74  248.8   0.3      3e-74  248.4   0.2    1.1  1  TIGR01243 CDC48: AAA family ATPase, CDC48 subfamily
      2e-62  209.4   2.3    2.5e-62  209.1   1.6    1.1  1  TIGR03689 pup_AAA: proteasome ATPase
      1e-07   29.2   0.0    1.7e-07   28.4   0.0    1.3  1  TIGR00382 clpX: ATP-dependent Clp protease, ATP-binding subunit ClpX
    3.8e-07   26.9   0.0      7e-07   26.0   0.0    1.4  1  TIGR03922 T7SS_EccA: type VII secretion AAA-ATPase EccA
    6.8e-07   26.4   0.0    1.3e-06   25.5   0.0    1.4  1  TIGR00635 ruvB: Holliday junction DNA helicase RuvB
    8.3e-07   26.1   2.2    0.00021   18.2   0.0    2.8  3  TIGR00390 hslU: ATP-dependent protease HslVU, ATPase subunit
    7.4e-06   22.9   0.2    0.00011   19.0   0.0    2.6  2  TIGR02928 TIGR02928: orc1/cdc6 family replication initiation protein
    1.4e-05   21.5   0.0    2.2e-05   21.0   0.0    1.4  1  TIGR00763 lon: ATP-dependent protease La
    0.00061   16.2   0.0     0.0012   15.2   0.0    1.4  1  TIGR02903 spore_lon_C: ATP-dependent protease, Lon family
     0.0012   15.8   0.0     0.0026   14.7   0.0    1.5  1  TIGR02881 spore_V_K: stage V sporulation protein K
     0.0052   14.1   0.0       0.01   13.2   0.0    1.4  1  TIGR02640 gas_vesic_GvpN: gas vesicle protein GvpN
     0.0063   13.0   0.0      0.011   12.2   0.0    1.3  1  TIGR02902 spore_lonB: ATP-dependent protease LonB
     0.0065   12.9   0.1      0.043   10.2   0.0    2.1  2  TIGR00764 lon_rel: putative ATP-dependent protease
     0.0068   13.8   0.0      0.035   11.4   0.0    2.1  1  TIGR03420 DnaA_homol_Hda: DnaA regulatory inactivator Hda
     0.0082   12.6   0.0      0.013   11.9   0.0    1.2  1  TIGR00368 TIGR00368: Mg chelatase-like protein
  ------ inclusion threshold ------
      0.014   12.8   0.0      0.027   11.9   0.0    1.4  1  TIGR00678 holB: DNA polymerase III, delta' subunit


Domain annotation for each model (and alignments):
>> TIGR01242  26Sp45: 26S proteasome subunit P45 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  448.2   2.0  2.1e-137  4.8e-135       7     363 ..      27     383 ..      21     384 .. 0.99

  Alignments for each domain:
  == domain 1    score: 448.2 bits;  conditional E-value: 2.1e-137
   TIGR01242   7 kirkledekkllekekirlereverlrselerlrsppllvavvvevlddervvvksstGpkfvvnvskfidrkelkpGarvalnqrtlaivdvlptekdplvkaleveerpevsyediGGlekqlreireavelplkkpelfeevGieppkGvllyGppGtGktllakavaeetnatfirvvgselvkkyiGeGarlvrevfklakekapsiifideidaiaakrldsstsGdrevqrtllqllaeldGfdprgnvkviaatnrldildpallrpGrfdrlievplpdleGrleilkihtrkmklaedvdleelaklteGasGadlkaivteaGmfaireerdkvtmedflkavekv 363
                 + ++++ +++++ +e   l+++ ++  ++l+ l+s   +++ v+  ldder +vk+s+Gp++vv + + id+++l+ G+rv+l+  tl+i+  lp e dp+v  ++ e+  +vsy  +GGl++q+re+re++elpl +pelf +vGi+ pkGvllyGppGtGktlla+ava++++a+f++vv+s +v kyiGe arl+r +f  ak+  p+iif+deidai+ +r  + ts dre+qrtl++ll +ldGfd++g+vk+i+atnr+d+ldpal+rpGr+dr ie+plp++  r+++lkih+  +  ++d+d e + kl++G+  adl+ ++teaGm+air erd+v  edf+k v kv
  MMETSP1137-20121227|5883_1  27 QHKEVDAKVRSMREEAKTLKKQYDKTEDDLKALQSVGQIIGEVLRRLDDERFIVKASSGPRYVVGCRNKIDKEKLEQGTRVTLDMTTLTIMRALPREVDPVVFHMKSEDPGDVSYGSVGGLNEQIRELREVIELPLINPELFTRVGIKAPKGVLLYGPPGTGKTLLARAVANNIDASFLKVVASAIVDKYIGESARLIRXMFGYAKDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDALGKVKMICATNRPDVLDPALMRPGRLDRKIEIPLPNEAARVDVLKIHAAPITKKGDIDYESVIKLADGFNAADLRNVCTEAGMYAIRAERDYVIEEDFMKGVRKV 383
                 56788999***********************************************************************************************************************************************************************************************************************************************************************************************************************************************************98 PP

>> TIGR01241  FtsH_fam: ATP-dependent metallopeptidase HflB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  253.1   0.2   4.9e-78   1.1e-75      46     298 ..     132     385 ..     128     395 .. 0.96

  Alignments for each domain:
  == domain 1    score: 253.1 bits;  conditional E-value: 4.9e-78
   TIGR01241  46 leeekvkvtfkdvaGideakeelveivdf.LknpkkftklGakiPkGvllvGpPGtGktLlakavaGeagvpffsisGsdfvemfvGvGasrvrDlfeqakknaPciifiDeiDavGrkrgaglgggndereqtLnqlLvemDGfetnegvivlaatnrpdvLDkaLlrPGrfDrqvvvdkPdlkgreeilkvhakkvklaeevdlkkvarrtpGfsGadlanlvneaallaarknkkevtlkeleeavdrvia 298
                  +e+   v++  v G++e+ +el e+++  L np+ ft++G k PkGvll+GpPGtGktLla+ava + + +f+++  s  v+ ++G  a  +r +f  ak + Pciif+DeiDa+G +r    +++  e ++tL  lL ++DGf++  +v ++ atnrpdvLD+aL+rPGr+Dr++ + +P+ + r ++lk+ha  ++ + ++d ++v + + Gf  adl n++ ea + a r +++ v  +++ + v +v  
  MMETSP1137-20121227|5883_1 132 KSEDPGDVSYGSVGGLNEQIRELREVIELpLINPELFTRVGIKAPKGVLLYGPPGTGKTLLARAVANNIDASFLKVVASAIVDKYIGESARLIRXMFGYAKDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDALGKVKMICATNRPDVLDPALMRPGRLDRKIEIPLPNEAARVDVLKIHAAPITKKGDIDYESVIKLADGFNAADLRNVCTEAGMYAIRAERDYVIEEDFMKGVRKVAE 385
                 456677899*******************879*****************************************************************************************999999999********************************************************************************************************************999999865 PP

>> TIGR01243  CDC48: AAA family ATPase, CDC48 subfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  248.4   0.2   1.3e-76     3e-74     420     694 ..     108     385 ..      82     397 .. 0.85

  Alignments for each domain:
  == domain 1    score: 248.4 bits;  conditional E-value: 1.3e-76
   TIGR01243 420 elkvtkkdfkeal.kmvepsalrevlvevpnvkwediggleevkqelreavewplkakevfeklgirppkgvllfgppgtgktllakavatesganfiavrgpeilskwvgesekaireifrkarqaapaiifldeidaiapargadlsea..vtdrivnqllteldgleensdvvviaatnrpdildpallrpgrldrlilvpapdeearleifkihtrslplaedvdleelakktegytgadieavvreaalaalresvksvakekleaeekeilk 694
                  l +t   ++ al ++v+p ++     +  +v +  +ggl+e  +elre +e pl ++e+f ++gi+ pkgvll+gppgtgktlla+ava++ +a f+ v    i+ k++ges + ir +f  a++  p+iif+deidai  +r ++ ++a    +r + +ll +ldg++   +v +i+atnrpd+ldpal+rpgrldr i +p p+e ar++++kih+  ++   d+d e + k ++g+  ad+  v+ ea + a+r     v +e + ++ +++ +
  MMETSP1137-20121227|5883_1 108 TLDMTTLTIMRALpREVDPVVFHMKSEDPGDVSYGSVGGLNEQIRELREVIELPLINPELFTRVGIKAPKGVLLYGPPGTGKTLLARAVANNIDASFLKVVASAIVDKYIGESARLIRXMFGYAKDHQPCIIFMDEIDAIGGRRFSEGTSAdrEIQRTLMELLNQLDGFDALGKVKMICATNRPDVLDPALMRPGRLDRKIEIPLPNEAARVDVLKIHAAPITKKGDIDYESVIKLADGFNAADLRNVCTEAGMYAIRAERDYVIEEDFMKGVRKVAE 385
                 456666677777756788877766665666999***********************************************************************************************************9998555443323457888899999********************************************************************************************977766666665555555544 PP

>> TIGR03689  pup_AAA: proteasome ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  209.1   1.6   1.1e-64   2.5e-62     101     418 ..      57     369 ..       9     385 .. 0.79

  Alignments for each domain:
  == domain 1    score: 209.1 bits;  conditional E-value: 1.1e-64
   TIGR03689 101 ldaervGeiv.tlkevlddgralvvdkadeervvklagalaeeklraGdsllvdlkaglaleavpkseveelvl....eevPdvtyadiGGldsqieqirdavelPflhkelyreydlkpPkGvllyGPPGcGktliakavanslaekvaedgeaksyflnikGPellnkyvGeterqirliferarekaaegrPvvvffdemdslfrtr.GsGvssdvet.tvvPqllaeldGveslenviviGasnredlidPailrPGrldvkirierPdaeaaadilakyltedlPl.eedl.aeadgdreaavealiekvvda.lyareeene 418
                 +  ++vG+i  ++   ldd+r +v + ++  +vv   +++ +ekl++G ++ +d+ +   ++a+p++ v+ +v+    e+  dv+y  +GGl++qi ++r+ +elP++++el+++ ++k+PkGvllyGPPG+Gktl+a+avan +           + fl++    +++ky+Ge+ r ir +f  a    ++ +P ++f+de+d++   r   G s+d e    +  ll +ldG ++l  v +i a+nr d++dPa++rPGrld ki i  P+++a  d+l+ + ++     + d+ +  +  +  ++++l+++  +a +ya + e++
  MMETSP1137-20121227|5883_1  57 KALQSVGQIIgEVLRRLDDERFIVKASSGPRYVVGCRNKIDKEKLEQGTRVTLDMTTLTIMRALPRE-VDPVVFhmksEDPGDVSYGSVGGLNEQIRELREVIELPLINPELFTRVGIKAPKGVLLYGPPGTGKTLLARAVANNID----------ASFLKVVASAIVDKYIGESARLIRXMFGYA----KDHQPCIIFMDEIDAIGGRRfSEGTSADREIqRTLMELLNQLDGFDALGKVKMICATNRPDVLDPALMRPGRLDRKIEIPLPNEAARVDVLKIHAAPITKKgDIDYeSVIKLADGFNAADLRNVCTEAgMYAIRAERD 369
                 4567889975379999*************************************************96.44444322226667************************************************************9764..........57*************************875....6889************866625699*99995246789*****************************************************998854322221112211222333444555555555433666555555 PP

>> TIGR00382  clpX: ATP-dependent Clp protease, ATP-binding subunit ClpX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.4   0.0   7.6e-10   1.7e-07     120     207 ..     179     262 ..     168     272 .. 0.86

  Alignments for each domain:
  == domain 1    score: 28.4 bits;  conditional E-value: 7.6e-10
   TIGR00382 120 illiGptGsGktllaqtlakeldvpfaiadattlteaGyvGedvenillkllqaadydvekaekGiiyideidkia..rksenasitrdv 207
                 +ll Gp G+Gktlla+++a+++d  f    a+++ +  y+Ge       +l++      +  +  ii++deid i   r se++s  r++
  MMETSP1137-20121227|5883_1 179 VLLYGPPGTGKTLLARAVANNIDASFLKVVASAIVD-KYIGESA-----RLIRXMFGYAKDHQPCIIFMDEIDAIGgrRFSEGTSADREI 262
                 899***********************9999988887.6****85.....788888888889999***********644779999998876 PP

>> TIGR03922  T7SS_EccA: type VII secretion AAA-ATPase EccA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.0   0.0   3.1e-09     7e-07     286     393 ..     149     253 ..     143     276 .. 0.79

  Alignments for each domain:
  == domain 1    score: 26.0 bits;  conditional E-value: 3.1e-09
   TIGR03922 286 eqvaalkssvevalvRaerGlavaqrs.kHlllaGPPGtGkttiArvvakiyaGlgvlrkpevrEvsRadligeyigeseaktnelidkaLgg...vlFlDEayaLvekrdg 393
                 eq++ l++ +e+ l+  e    v  ++ k +ll GPPGtGkt +Ar+va+ +         +   v  + ++ +yiges+     +   a +    ++F+DE+ a+  +r  
  MMETSP1137-20121227|5883_1 149 EQIRELREVIELPLINPELFTRVGIKApKGVLLYGPPGTGKTLLARAVANNI-------DASFLKVVASAIVDKYIGESARLIRXMFGYAKDHqpcIIFMDEIDAIGGRRFS 253
                 7888888888888888888888877663678999***************975.......3456667789999***************9999854559*****9988776544 PP

>> TIGR00635  ruvB: Holliday junction DNA helicase RuvB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.5   0.0   5.8e-09   1.3e-06      31      93 ..     177     247 ..     169     254 .. 0.71

  Alignments for each domain:
  == domain 1    score: 25.5 bits;  conditional E-value: 5.8e-09
   TIGR00635  31 dhvllyGPPGlGkttlakiiakelgvk.lkitsgpalek....pgDlaailtal.eegd..vlfiDeihrl 93 
                   vllyGPPG Gkt la+ +a++++++ lk++++  ++k    +  l+  +    ++++  ++f+Dei ++
  MMETSP1137-20121227|5883_1 177 KGVLLYGPPGTGKTLLARAVANNIDASfLKVVASAIVDKyigeSARLIRXMFGYaKDHQpcIIFMDEIDAI 247
                 669*********************98747899988888832222333333333212222448899998776 PP

>> TIGR00390  hslU: ATP-dependent protease HslVU, ATPase subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.1       1.7   3.8e+02      91     128 ..      29      66 ..      20     111 .. 0.67
   2 !   18.2   0.0   9.2e-07   0.00021      46      85 ..     175     214 ..     169     229 .. 0.88
   3 !    6.7   0.0    0.0028      0.64     246     283 ..     234     270 ..     226     285 .. 0.78

  Alignments for each domain:
  == domain 1    score: -2.4 bits;  conditional E-value: 1.7
   TIGR00390  91 rdveslvrdlvdaavklvkeekiekvkekaeeaaeeri 128
                 ++v++ vr + + a  l k+  + +   ka + + + i
  MMETSP1137-20121227|5883_1  29 KEVDAKVRSMREEAKTLKKQYDKTEDDLKALQSVGQII 66 
                 66777777777776666666555555555555544433 PP

  == domain 2    score: 18.2 bits;  conditional E-value: 9.2e-07
   TIGR00390  46 vPknilmiGstGvGkteiarrlaklaeaPfikveatkfte 85 
                  Pk +l+ G+ G Gkt +ar +a  ++a f+kv a+   +
  MMETSP1137-20121227|5883_1 175 APKGVLLYGPPGTGKTLLARAVANNIDASFLKVVASAIVD 214
                 59*******************************9997654 PP

  == domain 3    score: 6.7 bits;  conditional E-value: 0.0028
   TIGR00390 246 eesGiifideidkiakkgessgadvsreGvqrdllPiv 283
                  +  iif+deid i  +  s g+   re +qr l+ ++
  MMETSP1137-20121227|5883_1 234 HQPCIIFMDEIDAIGGRRFSEGTSADRE-IQRTLMELL 270
                 5778***********9996666666676.899888775 PP

>> TIGR02928  TIGR02928: orc1/cdc6 family replication initiation protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.0   4.9e-07   0.00011      38      67 ..     174     203 ..     148     215 .. 0.86
   2 ?    0.9   0.1      0.15        34     131     175 ..     237     290 ..     221     393 .. 0.54

  Alignments for each domain:
  == domain 1    score: 19.0 bits;  conditional E-value: 4.9e-07
   TIGR02928  38 srpsnvliyGktGtGKtavtkkvlkeleea 67 
                 + p+ vl+yG++GtGKt+ +++v +++ ++
  MMETSP1137-20121227|5883_1 174 KAPKGVLLYGPPGTGKTLLARAVANNIDAS 203
                 6799*********************99765 PP

  == domain 2    score: 0.9 bits;  conditional E-value: 0.15
   TIGR02928 131 liivLDEiDklv.kkeade..........lLyeLsraeengdlekakvsvigisnd 175
                  ii +DEiD +  ++   e          +L+eL+   +  d+   kv +i  +n 
  MMETSP1137-20121227|5883_1 237 CIIFMDEIDAIGgRRFS-EgtsadreiqrTLMELLNQLDGFDAL-GKVKMICATNR 290
                 56666777666422211.12333344444444444443333333.34444444444 PP

>> TIGR00763  lon: ATP-dependent protease La
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.0   0.0   9.5e-08   2.2e-05     356     434 ..     179     251 ..     169     387 .. 0.85

  Alignments for each domain:
  == domain 1    score: 21.0 bits;  conditional E-value: 9.5e-08
   TIGR00763 356 lclvGPPGVGKtSlaksiAkalnrkfvrlslGGlkDvaeikGHRrtYvGalPGkiiqglk.kvktenP.lillDEiDKlg..s 434
                 + l+GPPG GKt la+++A+ ++  f+++    + D          Y+G    ++i  +   +k + P +i++DEiD +g  +
  MMETSP1137-20121227|5883_1 179 VLLYGPPGTGKTLLARAVANNIDASFLKVVASAIVDK---------YIGES-ARLIRXMFgYAKDHQPcIIFMDEIDAIGgrR 251
                 679**************************99999985.........88874.6788777525677777345689999888441 PP

>> TIGR02903  spore_lon_C: ATP-dependent protease, Lon family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0   5.4e-06    0.0012     154     197 ..     155     198 ..     149     207 .. 0.80

  Alignments for each domain:
  == domain 1    score: 15.2 bits;  conditional E-value: 5.4e-06
   TIGR02903 154 seivGqeraikallaklaspfpqhiilyGppGvGkttaarlale 197
                  e++        l++++    p+ ++lyGppG Gkt  ar + +
  MMETSP1137-20121227|5883_1 155 REVIELPLINPELFTRVGIKAPKGVLLYGPPGTGKTLLARAVAN 198
                 555555555567889999999*******************8765 PP

>> TIGR02881  spore_V_K: stage V sporulation protein K
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0   1.1e-05    0.0026      11     116 ..     147     246 ..     141     261 .. 0.72

  Alignments for each domain:
  == domain 1    score: 14.7 bits;  conditional E-value: 1.1e-05
   TIGR02881  11 leevkelikeiyalilinek.rkeeglkaekqvlhmifkGnPGtGkttvarllaklfkelnvlskGhlieveradlvGeyiGhtaqktrevi...kkalGGvlfideays 116
                 l+e  + ++e+  l lin +  ++ g+ka k v   ++ G PGtGkt +ar +a+ +          +++v  + +v +yiG++a+ +r +    k  +  ++f+de  +
  MMETSP1137-20121227|5883_1 147 LNEQIRELREVIELPLINPElFTRVGIKAPKGV---LLYGPPGTGKTLLARAVANNI-------DASFLKVVASAIVDKYIGESARLIRXMFgyaKDHQPCIIFMDEIDA 246
                 555555555555555565431355566666665...578**************9744.......34678888999*************9986222555678999999755 PP

>> TIGR02640  gas_vesic_GvpN: gas vesicle protein GvpN
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   0.0   4.5e-05      0.01      20      49 ..     175     204 ..     169     222 .. 0.84

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 4.5e-05
   TIGR02640  20 sgypvhlrGPaGtGktslalhvakkrdrPv 49 
                 +   v l GP GtGkt la++va++ d   
  MMETSP1137-20121227|5883_1 175 APKGVLLYGPPGTGKTLLARAVANNIDASF 204
                 5567889*****************998665 PP

>> TIGR02902  spore_lonB: ATP-dependent protease LonB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.2   0.0   4.7e-05     0.011      85     109 ..     175     199 ..     167     212 .. 0.87

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 4.7e-05
   TIGR02902  85 npqhviiyGppGvGktaaarlvlee 109
                  p+ v++yGppG Gkt  ar v ++
  MMETSP1137-20121227|5883_1 175 APKGVLLYGPPGTGKTLLARAVANN 199
                 6999****************98765 PP

>> TIGR00764  lon_rel: putative ATP-dependent protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.2   0.0   0.00019     0.043      35      61 ..     174     200 ..     168     216 .. 0.85
   2 ?   -0.3   0.0      0.28        65     359     392 ..     351     385 ..     346     396 .. 0.78

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 0.00019
   TIGR00764  35 kqkrnvlliGePGvGksmlakamaell 61 
                 k  + vll G PG+Gk++la+a+a+ +
  MMETSP1137-20121227|5883_1 174 KAPKGVLLYGPPGTGKTLLARAVANNI 200
                 56678******************9865 PP

  == domain 2    score: -0.3 bits;  conditional E-value: 0.28
   TIGR00764 359 elggvvraagdiavkkgkkyvtredvle.alklak 392
                 +l +v   ag  a++ +++yv +ed ++ + k+a+
  MMETSP1137-20121227|5883_1 351 DLRNVCTEAGMYAIRAERDYVIEEDFMKgVRKVAE 385
                 789999*******************9883445553 PP

>> TIGR03420  DnaA_homol_Hda: DnaA regulatory inactivator Hda
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.4   0.0   0.00015     0.035      37     106 ..     175     251 ..     165     328 .. 0.62

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 0.00015
   TIGR03420  37 aerllylwGesgsGksHLLqAacaaaeeagksai...ylp..lkelaqllvev..legleqaelvalDdvealager 106
                 a + + l+G++g+Gk+ L +A+++++ +   +++    ++  + e a+l   +   ++++q  ++ +D+++a+ g+r
  MMETSP1137-20121227|5883_1 175 APKGVLLYGPPGTGKTLLARAVANNIDASFLKVVasaIVDkyIGESARLIRXMfgYAKDHQPCIIFMDEIDAIGGRR 251
                 566789*****************998876554431113331112222222344234555666778889998887654 PP

>> TIGR00368  TIGR00368: Mg chelatase-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.9   0.0   5.7e-05     0.013     213     232 ..     178     197 ..     170     213 .. 0.86

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 5.7e-05
   TIGR00368 213 nllllGPPGsGktllakrlq 232
                  +ll GPPG+Gktlla+ + 
  MMETSP1137-20121227|5883_1 178 GVLLYGPPGTGKTLLARAVA 197
                 589*************9875 PP

>> TIGR00678  holB: DNA polymerase III, delta' subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   0.00012     0.027      13      38 ..     175     200 ..     169     210 .. 0.89

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 0.00012
   TIGR00678  13 lahAlLfaGpeGvGkealaealakal 38 
                  ++ +L++Gp+G+Gk+ la+a+a+++
  MMETSP1137-20121227|5883_1 175 APKGVLLYGPPGTGKTLLARAVANNI 200
                 67899******************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (398 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       325  (0.0792296); expected 82.0 (0.02)
Passed bias filter:                      270  (0.0658216); expected 82.0 (0.02)
Passed Vit filter:                        66  (0.0160897); expected 4.1 (0.001)
Passed Fwd filter:                        18  (0.0043881); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              18  [number of targets reported over threshold]
# CPU time: 0.56u 0.23s 00:00:00.79 Elapsed: 00:00:00.72
# Mc/sec: 729.61
//
Query:       MMETSP1137-20121227|5884_1  [L=550]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.9e-06   25.8   0.0    3.5e-06   25.0   0.0    1.5  1  TIGR02378 nirD_assim_sml: nitrite reductase [NAD(P)H], small subunit
    2.3e-05   21.1   0.0    3.4e-05   20.6   0.0    1.1  1  TIGR03228 anthran_1_2_A: anthranilate 1,2-dioxygenase, large subunit
    5.5e-05   20.0   0.0    7.9e-05   19.5   0.0    1.1  1  TIGR03229 benzo_1_2_benA: benzoate 1,2-dioxygenase, large subunit


Domain annotation for each model (and alignments):
>> TIGR02378  nirD_assim_sml: nitrite reductase [NAD(P)H], small subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.0   0.0   2.5e-09   3.5e-06       2      81 ..      42     119 ..      41     152 .. 0.90

  Alignments for each domain:
  == domain 1    score: 25.0 bits;  conditional E-value: 2.5e-09
   TIGR02378   2 wqavckleelpeesgvavklddeqlAiFrvkkkevyAiqnlcPhkrafvlsrGlvgdaegelvvacPlhkrkfeLedGkc 81 
                 w   c + +l+++s + v++ +++l +F+ ++  v+ +++ cPh+  ++ls G + ++  ++v  c +h ++f+  +G+c
  MMETSP1137-20121227|5884_1  42 WYPACFAAQLSSTSPTLVQIFERDLVLFKDADGTVRCLKDECPHR-LAPLSTGRITTHGKSTVLECSYHGWQFD-GSGTC 119
                 7788999999**********************************9.88*************************8.45555 PP

>> TIGR03228  anthran_1_2_A: anthranilate 1,2-dioxygenase, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   0.0   2.5e-08   3.4e-05      36     150 ..      39     153 ..      25     163 .. 0.77

  Alignments for each domain:
  == domain 1    score: 20.6 bits;  conditional E-value: 2.5e-08
   TIGR03228  36 eknwiyacheselannhdfvtlragrqplivtrdgegelhalvnacehrgatlt..rv.gkgnqsvftcpfhawcyksdgrlvkvkapgeyaegfdkatrglkkariesyrgfvfvsl 150
                  + w  ac  ++l+ +     +++  + l++ +d +g +++l + c hr a l   r+ ++g+ +v+ c +h w +   g  v +    e ++ +  +    +   +++++g+vfv l
  MMETSP1137-20121227|5884_1  39 LNLWYPACFAAQLSSTSPT-LVQIFERDLVLFKDADGTVRCLKDECPHRLAPLStgRItTHGKSTVLECSYHGWQFDGSGTCVLLPQRDEGKKII--SQYDAHAVPVQTHQGIVFVFL 153
                 5679999*99999987765.57899999**********************98863465257888899*********9999887765544443333..344555667888888888877 PP

>> TIGR03229  benzo_1_2_benA: benzoate 1,2-dioxygenase, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.0   5.8e-08   7.9e-05      58     116 ..      61     121 ..      29     138 .. 0.74

  Alignments for each domain:
  == domain 1    score: 19.5 bits;  conditional E-value: 5.8e-08
   TIGR03229  58 klgrqpiliarnkdgelnalinacshrgamlc..rhk.rgnkatytcpfhgwtfnnsgkllk 116
                  + r+ +++ ++ dg + +l + c hr a l+  r   +g+ + + c +hgw f+ sg  + 
  MMETSP1137-20121227|5884_1  61 IFERD-LVLFKDADGTVRCLKDECPHRLAPLStgRITtHGKSTVLECSYHGWQFDGSGTCVL 121
                 44444.5566899****************99733443256667789***********97543 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (550 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       116  (0.0282789); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.39u 0.10s 00:00:00.49 Elapsed: 00:00:00.91
# Mc/sec: 797.74
//
Query:       MMETSP1137-20121227|5885_1  [L=326]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (326 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       166  (0.0404681); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.17s 00:00:00.42 Elapsed: 00:00:00.57
# Mc/sec: 741.87
//
Query:       MMETSP1137-20121227|5886_1  [L=367]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-20   71.5   0.0      2e-20   71.1   0.0    1.2  1  TIGR02090 LEU1_arch: isopropylmalate/citramalate/homocitrate synthases
    4.7e-20   69.9   0.0      8e-20   69.2   0.0    1.3  1  TIGR02146 LysS_fung_arch: homocitrate synthase
    1.1e-19   68.7   2.2    1.5e-19   68.3   1.1    1.5  1  TIGR02660 nifV_homocitr: homocitrate synthase
    2.5e-13   47.8   1.1    2.5e-12   44.5   1.2    2.0  2  TIGR03217 4OH_2_O_val_ald: 4-hydroxy-2-oxovalerate aldolase
    2.8e-13   47.0   0.3    7.8e-13   45.5   0.2    1.5  1  TIGR00973 leuA_bact: 2-isopropylmalate synthase
    1.2e-09   34.9   0.1    8.8e-07   25.4   0.2    2.2  2  TIGR00977 LeuA_rel: 2-isopropylmalate synthase/homocitrate synthase family protein
    1.2e-06   24.1   0.8    1.7e-06   23.6   0.6    1.1  1  TIGR01235 pyruv_carbox: pyruvate carboxylase
    1.5e-06   24.8   0.0    2.2e-06   24.3   0.0    1.1  1  TIGR01108 oadA: oxaloacetate decarboxylase alpha subunit


Domain annotation for each model (and alignments):
>> TIGR02090  LEU1_arch: isopropylmalate/citramalate/homocitrate synthases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.1   0.0   3.9e-23     2e-20       1     239 [.      21     276 ..      21     296 .. 0.84

  Alignments for each domain:
  == domain 1    score: 71.1 bits;  conditional E-value: 3.9e-23
   TIGR02090   1 vkifdttlrdGeqtPGvsltveqkveiakkldelGvdvieaGfaiaseg..eaeaikkiaeeglnaeilslara..lkkdidkaidcgvdsihlviatsdlhlkyklkkskdevlekaveaveyakehGlivefsaedatrtdidflikvfkkae......eagadrinvadtvGvltPekmeelikklkekvk.lpvsvhchndfGlavansiagvlaGaeqvhvtvnGlGe......raGnaaleevvialkvl 239
                 v+i++ + rdG q    ++ +  k+++ + l + Gv  iea + ++ +   ++   k+i+    ++  + +     + k    a+ +g++++ ++   s+   +  l+ + ++ +e a+e ++ a   G++v      a  ++ +  i+  k ae      eag   +++adt+G  t  +m+ l+++++++v    ++vhch+ +G a an + +++ G   v+++v GlG        aGn a e+vv  l+ l
  MMETSP1137-20121227|5886_1  21 VRIYELAPRDGLQNEPTAVPTSAKLRLIEMLGDAGVAAIEATSFVSPKWvpQMADHKEILAGLQQVPGVEYPILvpNLKGFQGAAAAGASTVAVMTIPSESFARRNLNCTVQQTVERALEIIRAAHLAGVRVRGYISCALGCPFEGAIDPAKVAElatlldEAGCYEVCLADTIGTGTAGSMNALLQRVTARVPaERLAVHCHDTYGQALANILCALTHGVAVVDASVAGLGGcpfapgAAGNVATEDVVYMLSGL 276
                 89****************************************9999875225556788887666665555433311557899999**********999**********************************9888888888777777655555433344499******************************9899***********************************633333369*********998765 PP

>> TIGR02146  LysS_fung_arch: homocitrate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.2   0.0   1.6e-22     8e-20       7     220 ..      29     252 ..      23     256 .. 0.85

  Alignments for each domain:
  == domain 1    score: 69.2 bits;  conditional E-value: 1.6e-22
   TIGR02146   7 reGeqtpgvvfstekrveiakaLddiGvdyievgs...Pavsedirkdikkiaklk....lkakivthsravlddievavelevdridvlfgvsklllkkkhrkdleeileeiaevieyvkskgvevrftaeDts......rsdledLlkvvktakeagvdrvsiaDtvGvatPrrvyelvrkvkrvvpgvdieihahnDlGlavanalaaiegGatvvdttvnGlG 220
                 r+G q +     t  ++++   L d Gv+ ie++s   P   +++    + +a l+    ++  i++     l+  + a+ ++   ++v+   s+   +++ + ++++ +e++ e+i  ++ +gv+vr     +         d  ++ ++  + +eag   v +aDt+G+ t   + +l+++v + vp+  + +h+h+  G a+an l a+  G  vvd++v GlG
  MMETSP1137-20121227|5886_1  29 RDGLQNEPTAVPTSAKLRLIEMLGDAGVAAIEATSfvsPKWVPQMADHKEILAGLQqvpgVEYPILV---PNLKGFQGAAAAGASTVAVMTIPSESFARRNLNCTVQQTVERALEIIRAAHLAGVRVRGYISCALgcpfegAIDPAKVAELATLLDEAGCYEVCLADTIGTGTAGSMNALLQRVTARVPAERLAVHCHDTYGQALANILCALTHGVAVVDASVAGLG 252
                 899999999999*********************9633377778888888888888855555555554...57899999**************************************************54444330011112344556666667789*********************************************************************9 PP

>> TIGR02660  nifV_homocitr: homocitrate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.3   1.1     3e-22   1.5e-19       4     251 ..      23     286 ..      20     299 .. 0.86

  Alignments for each domain:
  == domain 1    score: 68.3 bits;  conditional E-value: 3e-22
   TIGR02660   4 inDttLRDGEqaagvaFsaeEKlaiAkaLdeaGvdelEvG..ipamgeeEraairaiaalglkarllaWcRl..raedieaaaevGvkavdlsvpvsdlqleaklkkdrawvleelkelvslakeeglkv......svgaeDasRadeeflvelaevakeagakRlRfaDtvgvldPfstyelvkalraalele.lElHaHnDlGlAtAntlaavkaGassvsvtvlGlGE......RAGnAaleevalalkellgldtgidlse 251
                 i +   RDG q    a  ++ Kl++ ++L +aGv+ +E+   +       +a+ ++i+a  +++  + +  l  + +  + aa++G ++v + +  s+   +  l+ + +++ e+  e++++a+ +g++v      ++g+      d++ ++ela+ + eag   + +aDt+g  +  s+ +l+++++a+++ e l +H+H+ +G A An l a++ G+++v+ +v GlG        AGn a e+v+  l + lg+ +++d+++
  MMETSP1137-20121227|5886_1  23 IYELAPRDGLQNEPTAVPTSAKLRLIEMLGDAGVAAIEATsfVSPKWVPQMADHKEILAGLQQVPGVEYPILvpNLKGFQGAAAAGASTVAVMTIPSESFARRNLNCTVQQTVERALEIIRAAHLAGVRVrgyiscALGCPFEGAIDPAKVAELATLLDEAGCYEVCLADTIGTGTAGSMNALLQRVTARVPAErLAVHCHDTYGQALANILCALTHGVAVVDASVAGLGGcpfapgAAGNVATEDVVYML-SGLGVSCDVDFDA 286
                 556667********************************97332333345666777777777777777776552267899************99999*******************************998666665799999999**********************************************76549**********************************633333369**********99.6778888888876 PP

>> TIGR03217  4OH_2_O_val_ald: 4-hydroxy-2-oxovalerate aldolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.0      0.14        72       2      44 ..      20      62 ..      19      64 .. 0.90
   2 !   44.5   1.2   4.8e-15   2.5e-12     139     252 ..     167     285 ..      97     304 .. 0.88

  Alignments for each domain:
  == domain 1    score: 0.2 bits;  conditional E-value: 0.14
   TIGR03217  2 kltitdvtLrdGshavrhqftaeevraiaaaLdeagvdaieva 44
                +++i + + rdG ++    + +    ++++ L +agv aie +
  MMETSP1137-20121227|5886_1 20 SVRIYELAPRDGLQNEPTAVPTSAKLRLIEMLGDAGVAAIEAT 62
                578999999*****999999999999999***********976 PP

  == domain 2    score: 44.5 bits;  conditional E-value: 4.8e-15
   TIGR03217 139 maspeklaeqakllesyGadvvyvvdsaGallpedvkdrvkalkealkpetevGlhahenlslavansivaveeGatridaslaglGa......gaGnaplevlvavldrlGletgvdlf 252
                 +++p k+ae a+ll++ G+  v ++d+ G+ +   +++ ++ +++++  + ++ +h h+  + a+an + a+ +G++ +das+aglG       +aGn  +e +v +l  lG++ +vd+ 
  MMETSP1137-20121227|5886_1 167 AIDPAKVAELATLLDEAGCYEVCLADTIGTGTAGSMNALLQRVTARVP-AERLAVHCHDTYGQALANILCALTHGVAVVDASVAGLGGcpfapgAAGNVATEDVVYMLSGLGVSCDVDFD 285
                 57899**************************************99997.8899*********************************9533334369******************999974 PP

>> TIGR00973  leuA_bact: 2-isopropylmalate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.5   0.2   1.5e-15   7.8e-13       2     245 ..      21     273 ..      20     284 .. 0.80

  Alignments for each domain:
  == domain 1    score: 45.5 bits;  conditional E-value: 1.5e-15
   TIGR00973   2 vlifdttlrdGeqapgasltveeklqiakalerlgvdiieaGfpvsskgdfeavqkiarevknarvvglaravekdidaaaealk......paekkrihtfiatsdihleaklkktkdevlerivkavkyaknfvddve..fsae....dagrteleflarvveaaieaGattiniPdtvGyalPaeygelikelkenvPnidkailsvhchddlGlavanslaavknGarqvectinGiGe......raGnaaleevvmal 245
                 v i++ + rdG q   +++ +  kl++ ++l + gv  iea   vs k     v ++a +  +++++gl ++   +  + +  lk       a +  + ++   s+   +  l  t ++ +er+ ++++ a+     v    s+       g  + +++a++     eaG   + + dt+G  +     +l+++++ +vP      l+vhchd  G a an l a+ +G   v++++ G+G        aGn+a e+vv +l
  MMETSP1137-20121227|5886_1  21 VRIYELAPRDGLQNEPTAVPTSAKLRLIEMLGDAGVAAIEATSFVSPK----WVPQMADH--KEILAGLQQVPGVEYPILVPNLKgfqgaaAAGASTVAVMTIPSESFARRNLNCTVQQTVERALEIIRAAHLAGVRVRgyISCAlgcpFEGAIDPAKVAELATLLDEAGCYEVCLADTIGTGTAGSMNALLQRVTARVPA---ERLAVHCHDTYGQALANILCALTHGVAVVDASVAGLGGcpfapgAAGNVATEDVVYML 273
                 67899999********************************97655544....56666664..56677887775555555555555554433556678888888999999******************99998776666433355400004456677788888888889********************************7...5799********************************9633333369********9877 PP

>> TIGR00977  LeuA_rel: 2-isopropylmalate synthase/homocitrate synthase family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.2   0.0   0.00057      0.29       1      43 [.      20      62 ..      20      80 .. 0.89
   2 !   25.4   0.2   1.7e-09   8.8e-07     163     235 ..     180     252 ..     164     264 .. 0.92

  Alignments for each domain:
  == domain 1    score: 7.2 bits;  conditional E-value: 0.00057
   TIGR00977  1 slklydttlrdGaqaeGvslsledkiriaeklddlGihyieGG 43
                s+ +y+ + rdG q+e  ++    k+r+ e l d G+  ie  
  MMETSP1137-20121227|5886_1 20 SVRIYELAPRDGLQNEPTAVPTSAKLRLIEMLGDAGVAAIEAT 62
                689***********************************99975 PP

  == domain 2    score: 25.4 bits;  conditional E-value: 1.7e-09
   TIGR00977 163 aekaGadwlvladtnGGtlpheieeitkkvkkrlkdpqlGihahndsetavansllaveaGavqvqGtinGlG 235
                  ++aG   + ladt G    + ++ ++++v  r+ + +l +h h+  + a+an l a+  G   v+ ++ GlG
  MMETSP1137-20121227|5886_1 180 LDEAGCYEVCLADTIGTGTAGSMNALLQRVTARVPAERLAVHCHDTYGQALANILCALTHGVAVVDASVAGLG 252
                 46899999***************************************************************99 PP

>> TIGR01235  pyruv_carbox: pyruvate carboxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.6   0.6   3.3e-09   1.7e-06     692     782 ..     174     265 ..     167     285 .. 0.90

  Alignments for each domain:
  == domain 1    score: 23.6 bits;  conditional E-value: 3.3e-09
   TIGR01235 692 telaeelekaGahilaikdmaGllkPaaaklliaalrekt.dlPihlhthdtsGaavasvlaaveaGvdvvdvavdslsGltsqPslgalva 782
                  ela+ l +aG++ +++ d  G+    + + l++ + +++    + +h hdt G+a+a +l a   Gv vvd++v  l G    P +++ va
  MMETSP1137-20121227|5886_1 174 AELATLLDEAGCYEVCLADTIGTGTAGSMNALLQRVTARVpAERLAVHCHDTYGQALANILCALTHGVAVVDASVAGLGGCPFAPGAAGNVA 265
                 68999*********************9*******999998777899**********************************998888776555 PP

>> TIGR01108  oadA: oxaloacetate decarboxylase alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.3   0.0   4.2e-09   2.2e-06     150     258 ..     172     287 ..     135     296 .. 0.82

  Alignments for each domain:
  == domain 1    score: 24.3 bits;  conditional E-value: 4.2e-09
   TIGR01108 150 kylelakellelgvDsiaikDmaGlLtPkaayeLvsalkkeve.lpvelhshattglaelallkaieaGvdviDtaisslsa......gtshpatealvaalretgydtgldiell 258
                 k  ela  l e g+  +++ D  G  t      L++ +  +v+  ++ +h+h t g a +  l a+  Gv v+D++++ l +      ++++ ate +v++l++ g   ++d ++ 
  MMETSP1137-20121227|5886_1 172 KVAELATLLDEAGCYEVCLADTIGTGTAGSMNALLQRVTARVPaERLAVHCHDTYGQALANILCALTHGVAVVDASVAGLGGcpfapgAAGNVATEDVVYMLSGLGVSCDVDFDAA 287
                 5678999999********************************9568*******************************9986422222268899************99999988765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (367 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       194  (0.047294); expected 82.0 (0.02)
Passed bias filter:                      104  (0.0253535); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                         8  (0.00195027); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.40u 0.15s 00:00:00.55 Elapsed: 00:00:00.54
# Mc/sec: 897.04
//
Query:       MMETSP1137-20121227|5887_1  [L=221]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.011   12.9   0.8      0.012   12.7   0.5    1.1  1  TIGR03752 conj_TIGR03752: integrating conjugative element protein, PFL_4705 family


Domain annotation for each model (and alignments):
>> TIGR03752  conj_TIGR03752: integrating conjugative element protein, PFL_4705 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.5   2.9e-06     0.012      62     159 ..      47     151 ..      11     179 .. 0.69

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 2.9e-06
   TIGR03752  62 rtlvaelkelrkelaklekeNeklkkenerlkkreesvder......iqqaleaekkelkkekeqlkeeqakleelldelqkkledvaaekesseedlpvgl.Gl 159
                 + ++ael++ ++ela+ e+ N +l +  + +++++++++++      i+++ e e+ e+++++e+ ++e a++e++ + l ++  ++  +++  ++++  g+ G+
  MMETSP1137-20121227|5887_1  47 AAVAAELRHAEHELAECEARNAALVRMVTAVQAHSDELHRKwlaersIRKREEREEAEARAQEEAEEQELAQAEHDAKILLENAGGSRLTENMRNNSTGSGFlGF 151
                 5699*******************************9998872211113333333444444444444444444444444444444455555555555555554454 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (221 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       250  (0.0609459); expected 82.0 (0.02)
Passed bias filter:                      134  (0.032667); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.24u 0.16s 00:00:00.40 Elapsed: 00:00:00.33
# Mc/sec: 883.93
//
Query:       MMETSP1137-20121227|5888_1  [L=364]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.056    9.8   0.0      0.076    9.3   0.0    1.1  1  TIGR02003 PTS-II-BC-unk1: PTS system, IIBC component


Domain annotation for each model (and alignments):
>> TIGR02003  PTS-II-BC-unk1: PTS system, IIBC component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   0.0   1.9e-05     0.076     479     515 ..      59      95 ..      42     116 .. 0.87

  Alignments for each domain:
  == domain 1    score: 9.3 bits;  conditional E-value: 1.9e-05
   TIGR02003 479 lggkeniddvdacmtrlrvtvkdldkvaaeddwkkad 515
                 +  +e++d + acm  lr+tv+ +   ++ dd kka 
  MMETSP1137-20121227|5888_1  59 MNCAEDLDSLHACMHSLRLTVRSVGSSSPADDRKKAA 95 
                 667899*************************999985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (364 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        75  (0.0182838); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.28u 0.17s 00:00:00.45 Elapsed: 00:00:00.38
# Mc/sec: 1264.32
//
Query:       MMETSP1137-20121227|5889_1  [L=356]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (356 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        58  (0.0141394); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.12s 00:00:00.37 Elapsed: 00:00:00.38
# Mc/sec: 1236.53
//
Query:       MMETSP1137-20121227|5890_1  [L=847]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (847 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       237  (0.0577767); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.56u 0.17s 00:00:00.73 Elapsed: 00:00:01.00
# Mc/sec: 1117.95
//
Query:       MMETSP1137-20121227|5891_1  [L=447]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.3e-20   70.9   0.1    3.6e-20   70.2   0.1    1.2  1  TIGR02355 moeB: molybdopterin synthase sulfurylase MoeB
    7.8e-20   69.4   0.0    1.3e-19   68.7   0.0    1.2  1  TIGR02354 thiF_fam2: thiamine biosynthesis protein ThiF
    8.4e-20   68.9   0.2    1.5e-19   68.1   0.2    1.3  1  TIGR02356 adenyl_thiF: thiazole biosynthesis adenylyltransferase ThiF
  ------ inclusion threshold ------
      0.014   12.6   0.2      0.023   11.9   0.1    1.2  1  TIGR02817 adh_fam_1: zinc-binding alcohol dehydrogenase family protein
      0.016   12.2   0.1      0.032   11.1   0.0    1.4  1  TIGR03201 dearomat_had: 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase


Domain annotation for each model (and alignments):
>> TIGR02355  moeB: molybdopterin synthase sulfurylase MoeB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.2   0.1   4.4e-23   3.6e-20      26     145 ..      65     185 ..      51     191 .. 0.95

  Alignments for each domain:
  == domain 1    score: 70.2 bits;  conditional E-value: 4.4e-23
   TIGR02355  26 kvlivGlGGlGcaasqylaaaGvGrltlvdfdtvelsnlqrqvlhsdanigqpkvesakdaleelnphieietinaklddeelaaliakh.dvvvdctdnvevrnqlnrqcfaakvplvsg 145
                  v++vG+GG+G  a+q l   G+ rl lvdfd++ ls l+r    + a +g+pkv + +dal ++ p  +i++ +   + ++ ++l++   d+vvd+ d+++++ +l + c ++  p++s+
  MMETSP1137-20121227|5891_1  65 LVVVVGVGGVGSHAAQLLLRGGISRLRLVDFDQLTLSSLNRHATGTRAAVGKPKVIALRDALLQICPSADIDARSSLFNLANASELLEGTpDLVVDAIDDLATKAELLEYCVQNGLPVISA 185
                 5899*********************************************************************************9986449***************************97 PP

>> TIGR02354  thiF_fam2: thiamine biosynthesis protein ThiF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.7   0.0   1.6e-22   1.3e-19      23     156 ..      65     198 ..      50     212 .. 0.86

  Alignments for each domain:
  == domain 1    score: 68.7 bits;  conditional E-value: 1.6e-22
   TIGR02354  23 svaiaGlGGlGsnvainlaraGigklilvdfdvvepsnlnrqqykv.sdvGkkktealkeqiseinPyveieiidekideenleklfkda.divieafdnaeakallvnavlekykdkkliaasGlaGyedansik 156
                  v ++G+GG+Gs++a  l r Gi +l lvdfd++  s lnr +      vGk+k  al++ + +i P  +i++     +  n  +l++   d+v++a d+  +ka l +   +  +   +i+a G  G  da  ++
  MMETSP1137-20121227|5891_1  65 LVVVVGVGGVGSHAAQLLLRGGISRLRLVDFDQLTLSSLNRHATGTrAAVGKPKVIALRDALLQICPSADIDARSSLFNLANASELLEGTpDLVVDAIDDLATKAELLEYCVQ--NGLPVISAMGAGGKADAAQLH 198
                 5899*************************************99865168************************************998654*************987765443..344578888888888887655 PP

>> TIGR02356  adenyl_thiF: thiazole biosynthesis adenylyltransferase ThiF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.1   0.2   1.8e-22   1.5e-19      23     145 ..      65     188 ..      57     219 .. 0.93

  Alignments for each domain:
  == domain 1    score: 68.1 bits;  conditional E-value: 1.8e-22
   TIGR02356  23 kvliiGaGgLgsavaeylaaaGvgtiaivDdDevdlsNlqrqilfaeedvkrpKveaaaerlkelnseirvealkeevtaenleelieqv.dlvlDctDnfktrylindaceaagkPlisaavv 145
                  v+++G+Gg+gs++a++l + G+ ++ +vD D++ ls l+r    + + v++pKv a++++l ++ ++  ++a +   + +n +el+e + dlv+D+ D+++t+  + + c+++g P isa   
  MMETSP1137-20121227|5891_1  65 LVVVVGVGGVGSHAAQLLLRGGISRLRLVDFDQLTLSSLNRHATGTRAAVGKPKVIALRDALLQICPSADIDARSSLFNLANASELLEGTpDLVVDAIDDLATKAELLEYCVQNGLPVISAMGA 188
                 599************************************************************************************98658***************************98544 PP

>> TIGR02817  adh_fam_1: zinc-binding alcohol dehydrogenase family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.1   2.8e-05     0.023     118     170 ..      30      83 ..      16      94 .. 0.78

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 2.8e-05
   TIGR02817 118 faeaaalP.ltaitawellfdrlkieedvagekralliiGaaGGvgsiliqlar 170
                  a+a  l  +    +w   f rl  e  +  ++++l+++ + GGvgs + ql+ 
  MMETSP1137-20121227|5891_1  30 AAAAGLLSgIVVFVSWRRWFRRLSYEVVKIPQHTQLVVVVGVGGVGSHAAQLLL 83 
                 333333321445679************999*********************975 PP

>> TIGR03201  dearomat_had: 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   3.9e-05     0.032     166     208 ..      62     105 ..      55     124 .. 0.78

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 3.9e-05
   TIGR03201 166 kgdlviviGvGGvGgyavqvakalGaavv.aidideeklemvkk 208
                 + +lv+v+GvGGvG++a q+    G + +  +d d+  l  +++
  MMETSP1137-20121227|5891_1  62 HTQLVVVVGVGGVGSHAAQLLLRGGISRLrLVDFDQLTLSSLNR 105
                 5689***************9877777544146777777766655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (447 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       200  (0.0487567); expected 82.0 (0.02)
Passed bias filter:                      155  (0.0377864); expected 82.0 (0.02)
Passed Vit filter:                        30  (0.00731351); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.41u 0.19s 00:00:00.60 Elapsed: 00:00:00.35
# Mc/sec: 1685.69
//
Query:       MMETSP1137-20121227|5892_1  [L=134]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (134 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        49  (0.0119454); expected 82.0 (0.02)
Passed bias filter:                       41  (0.00999512); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.16s 00:00:00.31 Elapsed: 00:00:00.35
# Mc/sec: 505.33
//
Query:       MMETSP1137-20121227|5893_1  [L=402]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.5e-24   81.9   0.0    7.5e-24   81.5   0.0    1.1  1  TIGR03903 TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
    4.6e-10   37.1   0.3    7.3e-10   36.5   0.2    1.3  1  TIGR03724 arch_bud32: Kae1-associated kinase Bud32


Domain annotation for each model (and alignments):
>> TIGR03903  TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.5   0.0   3.7e-27   7.5e-24       4     184 ..      41     210 ..      38     226 .. 0.90

  Alignments for each domain:
  == domain 1    score: 81.5 bits;  conditional E-value: 3.7e-27
   TIGR03903   4 hkvaikllRedaaeeerlvaRFrReialCarLshPnivaLlDsGeaedgllFavFeyveGrtlrevLaadGaLpaaetgrLmlqvLDalaaahdaGvvhRDLkPqnimvsaadveshakvLDFGigaLlpgvedadeatltrttevlGsPaYaaPeqLRgepvt.aksDlYaWGLivleCLt 184
                 + vaik++ + ++e++      +Rei++   + hPn+++L +  +  +  +  v e+v G  l +++ a+G  + ++ +  +     al   h++ +vhRDLkP+ni+   ++++ + kv DFG++ +l+g +          +   G+P Y aPe L++      + D+++ G+i+   L 
  MMETSP1137-20121227|5893_1  41 KDVAIKIIDKAKVEDMND---IQREIEIMSMVDHPNVIKLYEIYDE-PKKMHLVMELVTGGELFDRIVAKGNYTEKDAADTIGTLCSALGYLHKKNIVHRDLKPENILYQSREDNACIKVADFGLARMLSGKDL--------MKTACGTPGYVAPEILKNQGYDsGAVDVWSAGVILYILLC 210
                 689*****9999999876...689***************9987665.5599*******************************************************************************9654........33458*************9875157799999999865555 PP

>> TIGR03724  arch_bud32: Kae1-associated kinase Bud32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.5   0.2   3.6e-13   7.3e-10      45     138 ..      60     164 ..      25     175 .. 0.75

  Alignments for each domain:
  == domain 1    score: 36.5 bits;  conditional E-value: 3.6e-13
   TIGR03724  45 rkEarllseakkagvntPvvydvdpeekkivmeyiegkklkdlleekel.......ellkevGelvgklHkagivhgDlttsNiivk..ddkly..liDfGLgkk 138
                 ++E+ ++s + +  v   + +  +p+++++vme + g +l d + +k +       +++ ++  ++g lHk++ivh Dl ++Ni+++  +d+++  + DfGL+++
  MMETSP1137-20121227|5893_1  60 QREIEIMSMVDHPNVIKLYEIYDEPKKMHLVMELVTGGELFDRIVAKGNytekdaaDTIGTLCSALGYLHKKNIVHRDLKPENILYQsrEDNACikVADFGLARM 164
                 577788887777655443333336889*********99988776665555888555666666678999******************644445441268****987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (402 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       155  (0.0377864); expected 82.0 (0.02)
Passed bias filter:                      121  (0.0294978); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.34u 0.13s 00:00:00.47 Elapsed: 00:00:00.51
# Mc/sec: 1040.38
//
Query:       MMETSP1137-20121227|5894_1  [L=316]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.079   10.7   2.5        1.3    6.7   0.2    2.3  2  TIGR00738 rrf2_super: Rrf2 family protein


Domain annotation for each model (and alignments):
>> TIGR00738  rrf2_super: Rrf2 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.1    0.0025        10      83     124 ..      57      96 ..      55     102 .. 0.79
   2 ?    6.7   0.2   0.00032       1.3      89     124 ..     274     308 ..     246     310 .. 0.74

  Alignments for each domain:
  == domain 1    score: 3.9 bits;  conditional E-value: 0.0025
   TIGR00738  83 veeklavveclskekceeeeeacllkkvleeleekiedvLse 124
                 ve+  a ve++s+++   eee+ +lk++ +  +++i+++L +
  MMETSP1137-20121227|5894_1  57 VEKAAACVEQMSSSDA--EEENKVLKELVHAQQQQIQSLLAK 96 
                 6777778888887333..57889**************99976 PP

  == domain 2    score: 6.7 bits;  conditional E-value: 0.00032
   TIGR00738  89 vveclskekceeeeeacllkkvleeleekiedvLse 124
                 + ++ +++ ++ + ++ + ++v+++l+++i++ L+e
  MMETSP1137-20121227|5894_1 274 IEQQEKDRRQR-QAAEQRAQRVWQQLDDAIRAKLRE 308
                 33333333333.677789***************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (316 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       317  (0.0772794); expected 82.0 (0.02)
Passed bias filter:                      135  (0.0329108); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.27u 0.15s 00:00:00.42 Elapsed: 00:00:00.43
# Mc/sec: 969.97
//
Query:       MMETSP1137-20121227|5895_1  [L=594]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (594 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        95  (0.0231594); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.15s 00:00:00.54 Elapsed: 00:00:00.44
# Mc/sec: 1781.85
//
Query:       MMETSP1137-20121227|5896_1  [L=289]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (289 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        97  (0.023647); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.12s 00:00:00.36 Elapsed: 00:00:00.36
# Mc/sec: 1059.58
//
Query:       MMETSP1137-20121227|5897_1  [L=340]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.8e-38  128.6   0.9    9.4e-25   84.6   0.0    3.2  3  TIGR00198 cat_per_HPI: catalase/peroxidase HPI


Domain annotation for each model (and alignments):
>> TIGR00198  cat_per_HPI: catalase/peroxidase HPI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.6   0.0   2.3e-28   9.4e-25      53     176 ..      53     184 ..      48     193 .. 0.86
   2 !   16.4   0.0   9.9e-08   0.00041     218     259 ..     197     237 ..     190     246 .. 0.86
   3 !   24.3   0.0   4.1e-10   1.7e-06     626     707 ..     252     331 ..     246     334 .. 0.87

  Alignments for each domain:
  == domain 1    score: 84.6 bits;  conditional E-value: 2.3e-28
   TIGR00198  53 dlaavkkdlkelltesqdwwpadf.........ghyggllirlawhaagtyriidgrggaadgsqrfaplnswpdnvnldkarrllwpikkkygrklswadliilagtvaledmglkvfgfaagredifepdk 176
                 d +avk +l++l+ + +   p+           g  ++ll+rlawh+ag+y    g gg+  g +rf p ++   n  l +a++ll pik      +swadli+ ag va+e+mg  + gf  gr d  +p+ 
  MMETSP1137-20121227|5897_1  53 DWHAVKSQLQALMADENAVNPSVDgaegskgggGYVAPLLLRLAWHSAGSYSKERGDGGTDGGTIRFEPEINHGGNAGLVHAIKLLEPIKASN-PSVSWADLIVYAGVVAIEEMGGPTVGFLPGRTDAPKPNT 184
                 78899999999999999988863311112222145589***************************************************9875.68*******************************999876 PP

  == domain 2    score: 16.4 bits;  conditional E-value: 9.9e-08
   TIGR00198 218 gspdplsaaqeirvtfarmgmndeetvaliagghtlgkchga 259
                   pd    aq++r  f rmg+ d e v l +g h++g+ch  
  MMETSP1137-20121227|5897_1 197 RLPDGDKGAQHLRDIFYRMGFSDREIVCL-SGAHAVGRCHTD 237
                 55777789******************998.79********75 PP

  == domain 3    score: 24.3 bits;  conditional E-value: 4.1e-10
   TIGR00198 626 lsndffvnlldmayewraadeskelfegrdrktgevkftatrvdlvlgsnsvlravaevyasddakekfvkdfvaawvkvmn 707
                 +sn++fvnll+m++  + + + k      + ++ + +     +d+ l ++  ++av e ya+d+  ekf kdf+a++ k+++
  MMETSP1137-20121227|5897_1 252 FSNEYFVNLLEMKWTPKKTHNGKPWTGPPQFESADGQLMMLPTDMALINDPKFKAVVEEYAKDE--EKFFKDFAAVFRKLLE 331
                 799*********99999999998877777888888888888889999999999*******9985..89*******9999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (340 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        93  (0.0226719); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.32u 0.15s 00:00:00.47 Elapsed: 00:00:00.60
# Mc/sec: 747.94
//
Query:       MMETSP1137-20121227|5898_1  [L=166]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (166 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       266  (0.0648464); expected 82.0 (0.02)
Passed bias filter:                      143  (0.034861); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.15s 00:00:00.34 Elapsed: 00:00:00.36
# Mc/sec: 608.62
//
Query:       MMETSP1137-20121227|5900_1  [L=326]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.3e-32  110.7   0.0    1.9e-32  110.2   0.0    1.1  1  TIGR01663 PNK-3'Pase: polynucleotide kinase 3'-phosphatase
    1.5e-28   97.7   0.0    2.4e-28   97.0   0.0    1.3  1  TIGR01664 DNA-3'-Pase: DNA 3'-phosphatase
    3.3e-22   76.9   0.0    4.8e-22   76.4   0.0    1.2  1  TIGR01662 HAD-SF-IIIA: HAD hydrolase, family IIIA
     0.0018   17.0   0.0     0.0027   16.4   0.0    1.4  1  TIGR01681 HAD-SF-IIIC: HAD phosphatase, family IIIC
     0.0049   14.7   0.0      0.011   13.6   0.0    1.5  1  TIGR01428 HAD_type_II: haloacid dehalogenase, type II
  ------ inclusion threshold ------
      0.012   13.4   0.0      0.023   12.5   0.0    1.5  1  TIGR01656 Histidinol-ppas: histidinol-phosphate phosphatase domain
      0.018   12.6   0.0      0.029   11.9   0.0    1.2  1  TIGR02247 HAD-1A3-hyp: epoxide hydrolase N-terminal domain-like phosphatase


Domain annotation for each model (and alignments):
>> TIGR01663  PNK-3'Pase: polynucleotide kinase 3'-phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  110.2   0.0   3.2e-35   1.9e-32     130     292 ..      92     256 ..      70     264 .. 0.83

  Alignments for each domain:
  == domain 1    score: 110.2 bits;  conditional E-value: 3.2e-35
   TIGR01663 130 rdaekskkrdrksnpgwenlekllvftavGvkgsekvaGydldGtliktksGkvfpkntddwrilypevpeklkelekeGyklvlftnqgsiarGkln..leefkvk....vkavveklGvpiqvlvaigdGlyrkpltGmwdhlkeeandGveisiddsifvGdaaGr 292
                  + e ++ r  k   gw   + ll++     ++s ++a +d+dG l  t  G    ++++ w++ +  vpe lk+l+keG+k+v++tn+ s+ r k +  ++   vk    +++     Gvp+qvl a+ +  yrkp tGmw+h+ ++ n Gv   ++d++fvGdaaG 
  MMETSP1137-20121227|5900_1  92 EQLETTELRRVKLSAGWRARGSLLLWEHLDPQPSTRIAAFDFDGCLAATSLGG---NDPNAWKMQFAHVPEVLKQLHKEGFKIVVLTNE-SMDRFKSEqaIKSCVVKkcgrLENFSRAAGVPLQVLCATAKDNYRKPATGMWEHVYHHGNGGVVPVVEDCFFVGDAAGA 256
                 366777777777778**********************************9985...78899***************************7.56666543114444443223378888999***********************************9************96 PP

>> TIGR01664  DNA-3'-Pase: DNA 3'-phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.0   0.0   4.1e-31   2.4e-28       8     140 ..     121     257 ..     114     272 .. 0.87

  Alignments for each domain:
  == domain 1    score: 97.0 bits;  conditional E-value: 4.1e-31
   TIGR01664   8 vpksidkvaaFDlDgtliktksnkvfsrsasdWrfkfkevksklkeLedegyvivifsNqsgiirvk......ksvekftnkilailkklkvPikvliAtkaskyRKPmtGmveyleskyis..kiklkrsfyvGDaagrk 140
                  p+++ ++aaFD+Dg+l+ t+ +     +++ W+++f +v++ lk+L++eg++iv+++N+s + r k        v k+ ++++++ ++ +vP++vl At +++yRKP tGm+e++ ++ +      +++ f+vGDaag k
  MMETSP1137-20121227|5900_1 121 DPQPSTRIAAFDFDGCLAATSLGGN---DPNAWKMQFAHVPEVLKQLHKEGFKIVVLTNES-MDRFKseqaikSCVVKKCGRLENFSRAAGVPLQVLCATAKDNYRKPATGMWEHVYHHGNGgvVPVVEDCFFVGDAAGAK 257
                 588999**************98755...599****************************96.5566657677344567889**************************************99854335899*********87 PP

>> TIGR01662  HAD-SF-IIIA: HAD hydrolase, family IIIA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.4   0.0   8.2e-25   4.8e-22       1     123 [.     127     256 ..     127     269 .. 0.90

  Alignments for each domain:
  == domain 1    score: 76.4 bits;  conditional E-value: 8.2e-25
   TIGR01662   1 klvvlDlDgtLi.ddvdyvteedeaelypevidalaelkkeGykvvivtNqsgigrgk......esveevsekveslleelgvpidvliacphskceyrKpktgmleealkrln...eidakesvvvGDavlt 123
                 +++ +D+Dg+L       +++ +++  + +v++ l++l+keG k+v++tN+s ++r k      + v +  +++e+++++ gvp++vl a+   k++yrKp tgm+e++  + n       +++++vGDa+++
  MMETSP1137-20121227|5900_1 127 RIAAFDFDGCLAaTSLGGNDPNAWKMQFAHVPEVLKQLHKEGFKIVVLTNES-MDRFKseqaikSCVVKKCGRLENFSRAAGVPLQVLCATA--KDNYRKPATGMWEHVYHHGNggvVPVVEDCFFVGDAAGA 256
                 5899********7777889999999999************************.9999999887666778899********************..9*******************96545679*******8875 PP

>> TIGR01681  HAD-SF-IIIC: HAD phosphatase, family IIIC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0   4.6e-06    0.0027       2      63 ..     128     183 ..     127     252 .. 0.86

  Alignments for each domain:
  == domain 1    score: 16.4 bits;  conditional E-value: 4.6e-06
   TIGR01681   2 vivfDlDnTLwtdeedvvkedpiedieltevtikeirdvLqelkknGvllalaSknddeeva 63 
                 + +fD D+ L  +   + ++dp    +  +++++++++vL++l k+G+ ++++++ ++++  
  MMETSP1137-20121227|5900_1 128 IAAFDFDGCLAAT--SLGGNDP----NAWKMQFAHVPEVLKQLHKEGFKIVVLTNESMDRFK 183
                 6799999999999..5555666....4444559*********************99877654 PP

>> TIGR01428  HAD_type_II: haloacid dehalogenase, type II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   0.0   1.8e-05     0.011      93     123 ..     154     184 ..     147     196 .. 0.88

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 1.8e-05
   TIGR01428  93 fpdvaagLkkLkerglklviLsNgstatlks 123
                 f+ v+++Lk+L+++g+k+v+L+N s + +ks
  MMETSP1137-20121227|5900_1 154 FAHVPEVLKQLHKEGFKIVVLTNESMDRFKS 184
                 899********************99988876 PP

>> TIGR01656  Histidinol-ppas: histidinol-phosphate phosphatase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   3.9e-05     0.023       5      85 ..     131     211 ..     128     254 .. 0.67

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 3.9e-05
   TIGR01656   5 lDrDGvlnedsqsdlavkslddlqlepklvdal.lklkaaaytlvvvtnQ..qGvgrglfeledllkvkgllrellrqkGvavd 85 
                 +D DG l+  s     +++ + ++++   v+++ ++l+++++++vv tn   +    + +  + + k  g+l +  r +Gv ++
  MMETSP1137-20121227|5900_1 131 FDFDGCLAATSL---GGNDPNAWKMQFAHVPEVlKQLHKEGFKIVVLTNEsmDRFKSEQAIKSCVVKKCGRLENFSRAAGVPLQ 211
                 799****99887...79*********9999886157899**********95433333333334444444555555555665554 PP

>> TIGR02247  HAD-1A3-hyp: epoxide hydrolase N-terminal domain-like phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0     5e-05     0.029      95     127 ..     153     185 ..     144     201 .. 0.75

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 5e-05
   TIGR02247  95 llpemvkaikslrakGfktalltnnlfldkeak 127
                 ++ ++ +++k+l+++Gfk+++ltn  +   +++
  MMETSP1137-20121227|5900_1 153 QFAHVPEVLKQLHKEGFKIVVLTNESMDRFKSE 185
                 56778899****************854333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (326 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       160  (0.0390054); expected 82.0 (0.02)
Passed bias filter:                      147  (0.0358362); expected 82.0 (0.02)
Passed Vit filter:                        22  (0.00536324); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.31u 0.17s 00:00:00.48 Elapsed: 00:00:00.31
# Mc/sec: 1388.01
//
Query:       MMETSP1137-20121227|5901_1  [L=416]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (416 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       110  (0.0268162); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.14s 00:00:00.46 Elapsed: 00:00:00.35
# Mc/sec: 1568.78
//
Query:       MMETSP1137-20121227|5902_1  [L=325]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.1e-16   57.5   4.2    4.4e-16   57.0   2.9    1.2  1  TIGR02349 DnaJ_bact: chaperone protein DnaJ
    3.3e-08   30.2   0.1    3.3e-08   30.2   0.1    1.4  2  TIGR03835 termin_org_DnaJ: terminal organelle assembly protein TopJ
  ------ inclusion threshold ------
        7.3    3.4  12.7        1.4    5.7   6.3    1.5  1  TIGR01554 major_cap_HK97: phage major capsid protein, HK97 family


Domain annotation for each model (and alignments):
>> TIGR02349  DnaJ_bact: chaperone protein DnaJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.0   2.9   3.2e-19   4.4e-16       3     136 ..      64     213 ..      62     228 .. 0.74

  Alignments for each domain:
  == domain 1    score: 57.0 bits;  conditional E-value: 3.2e-19
   TIGR02349   3 YeiLgvskdAseeeikkAYrklakkyHPDrnkgekeaeekfkeineAyevLsdeekraqYDqfghagleggaggggagfegfea............sefgd........igdifeeffgggggsgrr...rskarrgedlevelelsleeavkGvek 136
                 +e+Lg+s++A++ee++kAYr+++ + HPD+n++++ a++ f  ++ A+e L ++e+ a   ++ +a+ e+ +++ +++ ++ ++            +   +        i+++f ef g+++    +   +++++r++  e + e +++ea+   e+
  MMETSP1137-20121227|5902_1  64 FEVLGLSHKATNEEVRKAYRRMSVQVHPDKNPDDPRAQAAFELVKAAHERLDEPERMAFCQRICSAAEEAVEKRVAKDKRKLRKegaddavpeddpA---KmtlavkimISRMFAEFEGRKR----QleeKDREQRKKAKEEQAEREFMEALAKREQ 213
                 69************************************************************99999888776644433333333445555555441...0455644445555555555444....4434666777777777888888888765555 PP

>> TIGR03835  termin_org_DnaJ: terminal organelle assembly protein TopJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.2   0.1   2.4e-11   3.3e-08       5      60 ..      64     120 ..      61     125 .. 0.95
   2 ?   -5.8   1.5       1.9   2.6e+03     106     125 ..     192     211 ..     174     225 .. 0.47

  Alignments for each domain:
  == domain 1    score: 30.2 bits;  conditional E-value: 2.4e-11
   TIGR03835   5 yevLgidrDadeqeikkafrkLakkyhPDrnka.adaakifaeineandvLsnPkkr 60 
                 +evLg++  a ++e++ka+r+++ + hPD+n + + a+  f  +  a++ L  P++ 
  MMETSP1137-20121227|5902_1  64 FEVLGLSHKATNEEVRKAYRRMSVQVHPDKNPDdPRAQAAFELVKAAHERLDEPERM 120
                 8******************************999********************986 PP

  == domain 2    score: -5.8 bits;  conditional E-value: 1.9
   TIGR03835 106 kskkkkkkkkkgwfwakske 125
                 ++k k+ +  ++ + a +k+
  MMETSP1137-20121227|5902_1 192 RKKAKEEQAEREFMEALAKR 211
                 22222222223333333343 PP

>> TIGR01554  major_cap_HK97: phage major capsid protein, HK97 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   6.3    0.0011       1.4       7     117 ..     176     293 ..     170     295 .. 0.60

  Alignments for each domain:
  == domain 1    score: 5.7 bits;  conditional E-value: 0.0011
   TIGR01554   7 klaelakelkkltedekeeeaeeekkekdalkaeidkleaeierleea......aaeeeakeaasgeagkeeeeeeeakeeaaea....fraylrrgddalaeeakalstgtdsdgGylvP 117
                 +++ ++++l+++  + ++++a+ee++e +  ++ ++k e+++ +  ++      ++ +++ + +s+ ++k +ee +++ + ++++     + y + g +a+   ++a+  +++  +G+lvP
  MMETSP1137-20121227|5902_1 176 EFEGRKRQLEEKDRE-QRKKAKEEQAERE-FMEALAKREQKMWEKSRQkrvngwRNWASQGGGKSKIPNKVKEERRADGSGYNTYnddkGEDYKKDGVEATRL-RRAAGRQVPVRAGVLVP 293
                 555666667744444.4445555555555.6666666666666666665666666666666666666666666666665555555555444444444444444.6999999999******9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (325 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       337  (0.082155); expected 82.0 (0.02)
Passed bias filter:                      170  (0.0414432); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.35u 0.19s 00:00:00.54 Elapsed: 00:00:00.40
# Mc/sec: 1072.41
//
Query:       MMETSP1137-20121227|5903_1  [L=68]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.029   10.4   0.0      0.032   10.3   0.0    1.0  1  TIGR03670 rpoB_arch: DNA-directed RNA polymerase subunit B


Domain annotation for each model (and alignments):
>> TIGR03670  rpoB_arch: DNA-directed RNA polymerase subunit B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   7.8e-06     0.032     367     416 ..      10      59 ..       3      65 .. 0.90

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 7.8e-06
   TIGR03670 367 viGlivpqedmPfteeGivPdlilnPhalPsrmtvgqlleaiagkvaale 416
                 v+  ++p++ + ++e+G   +++  P  +P +    + le++ +k+aa +
  MMETSP1137-20121227|5903_1  10 VLQEVLPKAGLVYSEKGNLSEVLCKPKIMPIKSVTLEKLEQMEAKAAATQ 59 
                 788899*************************99989999*******9975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (68 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        42  (0.0102389); expected 82.0 (0.02)
Passed bias filter:                       34  (0.00828864); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:00.30
# Mc/sec: 299.18
//
Query:       MMETSP1137-20121227|5904_1  [L=509]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (509 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        76  (0.0185275); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.17s 00:00:00.51 Elapsed: 00:00:00.50
# Mc/sec: 1343.65
//
Query:       MMETSP1137-20121227|5905_1  [L=150]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (150 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       107  (0.0260848); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.16s 00:00:00.33 Elapsed: 00:00:00.49
# Mc/sec: 404.05
//
Query:       MMETSP1137-20121227|5906_1  [L=92]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (92 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        68  (0.0165773); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.28
# Mc/sec: 418.72
//
Query:       MMETSP1137-20121227|5907_1  [L=425]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (425 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       115  (0.0280351); expected 82.0 (0.02)
Passed bias filter:                      113  (0.0275475); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.15s 00:00:00.48 Elapsed: 00:00:00.51
# Mc/sec: 1099.91
//
Query:       MMETSP1137-20121227|5908_1  [L=285]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (285 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        48  (0.0117016); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.12s 00:00:00.34 Elapsed: 00:00:00.34
# Mc/sec: 1106.38
//
Query:       MMETSP1137-20121227|5909_1  [L=218]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (218 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        64  (0.0156021); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.15s 00:00:00.35 Elapsed: 00:00:00.32
# Mc/sec: 899.18
//
Query:       MMETSP1137-20121227|5910_1  [L=416]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (416 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        88  (0.0214529); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.17s 00:00:00.47 Elapsed: 00:00:00.56
# Mc/sec: 980.49
//
Query:       MMETSP1137-20121227|5911_1  [L=460]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (460 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        85  (0.0207216); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.17s 00:00:00.48 Elapsed: 00:00:00.39
# Mc/sec: 1556.79
//
Query:       MMETSP1137-20121227|5912_1  [L=479]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.2e-77  256.3   0.0      1e-76  255.9   0.0    1.0  1  TIGR01048 lysA: diaminopimelate decarboxylase
    1.1e-36  124.6   0.0    2.7e-36  123.3   0.0    1.5  1  TIGR03099 dCO2ase_PEP1: pyridoxal-dependent decarboxylase, exosortase A system-associated
    4.7e-15   52.7   0.0    6.1e-15   52.4   0.0    1.1  1  TIGR01047 nspC: carboxynorspermidine decarboxylase


Domain annotation for each model (and alignments):
>> TIGR01048  lysA: diaminopimelate decarboxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  255.9   0.0   7.5e-80     1e-76      14     416 ..      61     472 ..      53     473 .. 0.92

  Alignments for each domain:
  == domain 1    score: 255.9 bits;  conditional E-value: 7.5e-80
   TIGR01048  14 vdlkelaeefgtPlYvydeetlrerlealkeafkaeeslvlYAvKAnsnlavlrllaeeGlgldvvsgGEleralaAgvkaekivfsgngkseeeleaaleleiklinvdsveelelleeiakelgkkarvllRvnpdvdaktheyisTGlkesKFGieveeaeeayelalkleslelvGihvHIGSqildlepfveaaekvvklleelkeegieleeldlGGGlgisyeeeeeapdleeyaeklleklekea.elglklklilEpGRslvanagvlltrVesvKeves..rkfvlvDagmndliRpalYeayheiaalkr....leeeetetvdvvGplCEsgDvlakd.........relpeveeGdllavasaGAYgasmss.nYnsrprpaevlveeg.karlirrretledllale 416
                  +++e+ +++g+PlYvyde+tl++++++  ++ +a+  +v +A+KA+ n a+l+++ + Gl +d+ s  E+ ra aAgv +e+i +s +    ++l + l+++ik  n+ s+++l+ + e+ +++    ++ +R np+++     +++ G  +s FGi++e  ++ +++++++  le+  +h+HIGS+ +      ++  +v  l   l e+  ++++l+lGGG  +   + e+  dl+ + + ++e++e+ a ++g++l l +EpG +lvanag ll +V+ + ++++  + f   Dagm++l+Rp+lY+a+h ++++++      ++e   +  vG +CEsgD+++           rel ++  Gd+ +v+ aGAY+ sms  nYns p +aev+v++  + +l+r+r+ le+++++e
  MMETSP1137-20121227|5912_1  61 DKAREIRQKYGSPLYVYDEKTLKQQAASSLAFPNAYGLTVRFAMKACPNSAILQIFDNMGLHIDASSSYEVRRAIAAGVAPERISLSSQEL-ASDLGELLDMGIK-YNACSLRQLRAFGELRRGA-RGDQLGVRFNPGLGSGGTGKTNVGGPSSSFGIWHE-LMPEVKAIIDEYDLEPARVHTHIGSGSDP-----AVWTRVSGLSLGLCEQLPTVRVLNLGGGYKVGRMSGEKSTDLQTVGAPVKEAFEQFAqRTGRELALEIEPGTFLVANAGALLSTVQDIVTTGEqgHSFLKLDAGMTELLRPSLYGAQHPLVLVSAdasaPAATEPRSYIAVGHCCESGDLVTPApdqpevlqpRELAAAAVGDICVVEGAGAYCSSMSTkNYNSFPEAAEVMVDAAgEPHLVRQRQPLEQIWQNE 472
                 67899********************9987776666777************************************************99876.678*********9.9**************9998.88999*****************************9.9999*********************9543.....345667777777777789*************************************9999999************************99888776799***********************99987555455666778899***********988889******************************9648************97549**************998 PP

>> TIGR03099  dCO2ase_PEP1: pyridoxal-dependent decarboxylase, exosortase A system-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  123.3   0.0   1.9e-39   2.7e-36      16     398 .]      64     450 ..      57     450 .. 0.83

  Alignments for each domain:
  == domain 1    score: 123.3 bits;  conditional E-value: 1.9e-39
   TIGR03099  16 telaarvgttPfyaydrklikervaalrkalpe..elalhyalkanPmaaLlahlaelvdGlDvasagelklaldtGvdpekisfaGPGktdaeleaaiaagvllnveslrelarvaalaeklglrarvavrvnPdfelkssgl.kmgGgakqfGiDaeqvpevlakikaadldfkGlhifaGsqaLkaeaiieaqaktlalalelakeapapvrvlniGGGfGvpyfegeeeldlakvadalaalleklkeal.pevelileLGryLvaeaGiyvckvvdrkvs..rgekflvtdGGlhhhlaasGnlGqvirknypvaignrlkeaereevsivGpLCtPLDlla.........dkvelpkaeaGDlvvifqsGayGasasPkafLgqpeavelLv 398
                  e+ +++g+ P+y+yd k++k++ a+   a+p+   l++++a+ka P+ a+l+ + +    +D++s+ e+++a+++Gv+pe+is++      ++l + +  g+  n  slr+l+   +l ++  +  ++ vr nP +   ++g   +gG ++ fGi  e +pev a i ++dl+   +h + Gs +  a       +++  l l l ++ p  vrvln+GGG+ v  + ge++ dl++v++ +++ +e++++ + +e +l +e G +Lva+aG  +++v d  ++  +g+ fl +d G+   l  s  +G        +a ++   ++e  ++  vG  C   Dl++         +  el++a++GD+ v+  +Gay  s s k++ + pea+e++v
  MMETSP1137-20121227|5912_1  64 REIRQKYGS-PLYVYDEKTLKQQAAS-SLAFPNayGLTVRFAMKACPNSAILQIFDNMGLHIDASSSYEVRRAIAAGVAPERISLSSQ-ELASDLGELLDMGIKYNACSLRQLRAFGEL-RRGARGDQLGVRFNPGLGSGGTGKtNVGGPSSSFGIWHELMPEVKAIIDEYDLEPARVHTHIGSGSDPA-----VWTRVSGLSLGLCEQLP-TVRVLNLGGGYKVGRMSGEKSTDLQTVGAPVKEAFEQFAQRTgRELALEIEPGTFLVANAGALLSTVQDIVTTgeQGHSFLKLDAGMTELLRPS-LYGAQHPLVLVSADASAPAATEPRSYIAVGHCCESGDLVTpapdqpevlQPRELAAAAVGDICVVEGAGAYCSSMSTKNYNSFPEAAEVMV 450
                 577888888.***********99765.34566522799*******************9999************************975.67889*******************999988.56788899**********999996156666789*******************************86443.....34677788889998777.59***********************************99999899**********************9986643389**********9988776.45543333333333333333344445556666666666542221111114468999********************************997 PP

>> TIGR01047  nspC: carboxynorspermidine decarboxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.4   0.0   4.5e-18   6.1e-15       3     318 ..      72     399 ..      70     408 .. 0.80

  Alignments for each domain:
  == domain 1    score: 52.4 bits;  conditional E-value: 4.5e-18
   TIGR01047   3 tPafvleeeklrknleilesvkeksgvkvllalkgfalwsvfkilreylkGatasglyeaklakee.fgkevhvyspaykeedlkeileladkivfnslaqyakyrekvedknsevklGlrinpeysevekdlynPaskvsrlGvqakelee....slldgieGllfhtlCekdad.alertlevvekkfgeylekleWvnlGGGhlltk....egydvekliavike....fkerya..vqvilePGeaigwqtgflvasvvdiven.ekeiaildvsveahmpdtlempyrpevleasvkadeeleeve..ekegefsyllggstClaGdvlg 318
                 +P +v +e+ l++ ++      +  g  v +a+k+   +++++i  +      as+ ye++ a    +  e    s      dl e+l++  k    sl q++++ e  ++++   +lG+r np++    +   n  +  s +G+  + + e     +   +e    ht+  + +d a+   +  ++  + e l+ +  +nlGGG+ + +    +  d++ ++a +ke    f++r +  + + +ePG  ++ ++g l+++v div + e+ +++l    +a m + l    rp++++a+ +      +++    +   sy+  g  C +Gd+++
  MMETSP1137-20121227|5912_1  72 SPLYVYDEKTLKQQAASSLAFPNAYGLTVRFAMKACPNSAILQIFDNMGLHIDASSSYEVRRAIAAgVAPERISLSSQELASDLGELLDMGIKYNACSLRQLRAFGELRRGARG-DQLGVRFNPGLGSGGTGKTNVGGPSSSFGIWHELMPEvkaiIDEYDLEPARVHTHIGSGSDpAVWTRVSGLSLGLCEQLPTVRVLNLGGGYKVGRmsgeKSTDLQTVGAPVKEafeqFAQRTGreLALEIEPGTFLVANAGALLSTVQDIVTTgEQGHSFLK--LDAGMTELL----RPSLYGAQHPLVLVSADASapAATEPRSYIAVGHCCESGDLVT 399
                 8****************99**************************999777899999***9886542677888888888899************99**********99988777.79*****************************999988553322235778888998886555377788899********************987642222779****9998875433388998866888899********************99666677763..344555444....3444444444333333333225666778999999999998875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (479 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        74  (0.01804); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.40u 0.15s 00:00:00.55 Elapsed: 00:00:00.41
# Mc/sec: 1542.02
//
Query:       MMETSP1137-20121227|5913_1  [L=212]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (212 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       104  (0.0253535); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.17s 00:00:00.38 Elapsed: 00:00:00.56
# Mc/sec: 499.67
//
Query:       MMETSP1137-20121227|5914_1  [L=919]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   6.7e-272  901.0  16.8   3.7e-228  756.5   2.8    2.0  2  TIGR02350 prok_dnaK: chaperone protein DnaK
   3.8e-191  634.5   9.5   2.3e-168  559.2   1.2    2.0  2  TIGR01991 HscA: Fe-S protein assembly chaperone HscA
    2.9e-12   44.1   0.3    5.4e-11   39.9   0.0    2.1  2  TIGR00904 mreB: cell shape determining protein, MreB/Mrl family
    4.4e-11   40.5   0.1      2e-09   35.1   0.1    2.4  2  TIGR02529 EutJ: ethanolamine utilization protein EutJ family protein
    5.6e-05   19.7   0.0    0.00014   18.4   0.0    1.6  2  TIGR01312 XylB: xylulokinase
    6.3e-05   20.0   1.0     0.0009   16.2   0.0    2.7  2  TIGR01174 ftsA: cell division protein FtsA
    6.8e-05   21.0   0.1       0.37    9.0   0.0    2.9  2  TIGR03112 6_pyr_pter_rel: 6-pyruvoyl tetrahydropterin synthase-related domain


Domain annotation for each model (and alignments):
>> TIGR02350  prok_dnaK: chaperone protein DnaK
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  756.5   2.8  6.4e-231  3.7e-228       2     595 ..      11     617 ..      10     618 .. 0.94
   2 !  150.5   3.4   2.1e-47   1.2e-44     433     595 ..     714     881 ..     707     882 .. 0.92

  Alignments for each domain:
  == domain 1    score: 756.5 bits;  conditional E-value: 6.4e-231
   TIGR02350   2 iiGidLGttnsvvavleggepvvianaeGarttPsvvafkkdgerlvGelakrqavtnpentivsikrliGrkle..eveeeakkvpykvveaen.e....vkvevedkeytpeeisaeiLqklkkdaeaylGekvteavitvPayfndaqrqatkdaGkiaGlevlriinePtaaaLayGldke.kkdekilvfdlGGGtfdvsilelgdgvfevkstaGdtkLGGddfdekiidylaeefkkeegidLskdkmalqrlkeaaekakieLssaleteinlpfitadasgpkhlelkltrakfeelvedlvertkepvkkalkdaklsaseidevilvGGstriPavqelvkelvg.kepnksvnPdevvaiGaaiqggvlkge....vkdvlLldvtPLsLgietlGgvltkliernttiPtkksqvfstaednqpaveihvlqGerelaadnkslgrfeLtgippaPrGvpqievtfdidanGilsvsakdkatgkeqsitita.ssglseeeiermvkeaeanaeedkkkkeevearneadsliyqaektlke..agdkleeeekekiekaveelkealkeedveek..ikakteelekaleklaealy 595
                 +iGidLGtt s+v +++ ++ ++ian +G+rttPs+vaf+++ er++G++ak+qa +np nt++ +krliGr+++   ++++ k+ p+kv++++  +    v  + e ke+ peeis+++L k+k+ ae ylG ++++av+tvPayfnd+qr +tkdaG+iaGl+vlriinePtaaa+ayGldk+ + ++++l+fdlGGGtfdvs+l +++g+fevk+taGdt+LGG+dfd+++++++++efk+++  d++ +  a++rl+ a e+ak  Lss+++t+i++  +       +++  ++tra+feel++dl++ t+epv+k+l+d+k+s+s +++v+lvGGstriP+vq l+ ++++ kep++s+nPde+va Gaa+q+++l+g      +d+lLldvtPLsLg+et G v+t li rntt+Ptkksq+fst +dnqpav+i+v+ Ger+ ++dn++lg+f+L+gipp+PrGvpqi+vtfdidanG+l+vsa +k+tgke++itit+ +s ls+e++e+m+ +ae++a+ed + ke+vea+n ++ + y++++tl +   +dk+++++k+k+e+av+++ + l++++++ek   ++k +e+e  ++ +++a+y
  MMETSP1137-20121227|5914_1  11 AIGIDLGTTYSCVGIWQNDRVEIIANDQGNRTTPSYVAFTDS-ERMIGDAAKNQAAMNPMNTVFDAKRLIGRRFSesATQSDLKHFPFKVIAKDGdRpcivVDYKGESKEFFPEEISSMVLVKMKEVAESYLGSTINNAVVTVPAYFNDSQRASTKDAGAIAGLNVLRIINEPTAAAIAYGLDKSsSAERNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDITSNARAMRRLRTACERAKRTLSSSTQTSIEIDSLFE----GIDFFSSITRARFEELCMDLFRGTMEPVEKVLRDSKMSKSAVHDVVLVGGSTRIPKVQSLLSDFFNgKEPSRSINPDEAVAYGAAVQAAILSGTgsakTEDLLLLDVTPLSLGLETAGEVMTVLIPRNTTVPTKKSQTFSTYSDNQPAVTIQVFEGERSRTKDNNKLGEFNLSGIPPMPRGVPQIDVTFDIDANGMLNVSALEKSTGKENKITITNdKSRLSKEDVEKMTADAEKYAKEDAEFKEKVEAKNALEXYCYSMKSTLGDdkVKDKISADDKAKAETAVDDALKWLEGNQLAEKeeFEHKRKEVEGICTPIMTAMY 617
                 59***************************************9.******************************99444788999*******998742332233455689***************************************************************************8356789*****************************************************************************************987754....4678899********************************************************9966************************997776689******************************************************************************************************************963799********************************************87225799**********************9987754588888888888888888776 PP

  == domain 2    score: 150.5 bits;  conditional E-value: 2.1e-47
   TIGR02350 433 qGerelaadnkslgrfeLtgippaPrGvpqievtfdidanGilsvsakdkatgkeqsitita.ssglseeeiermvkeaeanaeedkkkkeevearneadsliyqaektlke..agdkleeeekekiekaveelkealkeedveek..ikakteelekaleklaealy 595
                 +Ger  ++dn++lg+f+L+ ipp+PrGvpqievtfdidanG+l+vsa +k+t+ke++itit+ +s ls++++e+m+ +ae++a+ed + ke+ve +n ++++ y++++tl +   +dk+++++k+k+e+av+++ + l++++++ek   ++k +e+e  ++ +++a+y
  MMETSP1137-20121227|5914_1 714 KGERTRTKDNNKLGEFNLSSIPPMPRGVPQIEVTFDIDANGMLNVSAVEKSTNKENKITITNdKSRLSKADVEKMTADAEKYAKEDAEFKEKVESKNALENYCYSMKSTLGDdkVKDKIPADDKAKAEAAVDDALKWLEGNQLAEKeeFEHKRKEVEGICTPIMTAMY 881
                 7***********************************************************963799********************************************87225799**********************9987754588888888888888888776 PP

>> TIGR01991  HscA: Fe-S protein assembly chaperone HscA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  559.2   1.2  3.9e-171  2.3e-168       1     567 [.      11     596 ..      11     615 .. 0.90
   2 !   79.9   0.8   5.5e-26   3.2e-23     424     566 ..     714     859 ..     711     879 .. 0.90

  Alignments for each domain:
  == domain 1    score: 559.2 bits;  conditional E-value: 3.9e-171
   TIGR01991   1 avGiDlGttnslvaavregkaevlkdeegrvllpsvvryleegkvevGkeakeaaaedpkntiisvkRlmGrsled..vkkeaeelpyeledakgemvrl....ktaqgevtPvevsaeiLkklkkraeealgkelkgavitvPAYFddaqrqatkdAarlaglnvlRLlnePtaAAvAYGldk..aseglyavYDLGGGtFDvsiLklekGvFevlatgGdsaLGGDDfDralaklil...kkagle.aelskeekkellkaaraakeaLtdaeevevevkl..egkdlkaklsreeleelieelvkktleivrralrdaglkveeikevvlvGGstrvplvrqavaelFk.kepltdldPdevvAlGAalqadlLa..knkrkedllLlDviPLsLGletmGGlvekiipRnttiPvakaqeFttykDgqtalaihvvqGeRelvedcrsLarFeLrgippmaAGaarirvtfqvDadGllsvsaqekltgveakievkp.sygLsdeeiekmlkdslknaeeDmeaRalaekkveaerilealekalkad..kdLlseeelkaikaaleklekaleeddaeaik 567
                 a+GiDlGtt+s v   +++++e++ +++g+ + ps v +++  +  +G++ak++aa +p nt+  +kRl+Gr  ++   ++  ++ p+++ +++g+ + +    k +++e  P e+s+ +L k+k+ ae+ lg+ +++av+tvPAYF+d qr +tkdA+ +aglnvlR++nePtaAA+AYGldk  ++e+ ++++DLGGGtFDvs+L +e+G+Fev+at+Gd++LGG+DfD++++++++   k+++ +  + ++  ++ l +a ++ak++L++++++++e+    eg d+  +++r+++eel  +l + t+e+v+++lrd++++++ +++vvlvGGstr+p+v++ ++++F+ kep  +++Pde vA GAa+qa +L+  +  ++edllLlDv+PLsLGlet G ++  +ipRntt+P++k+q F ty D+q a++i+v  GeR   +d+  L+ F+L+gippm+ G+ +i vtf++Da+G+l+vsa ek+tg+e+ki++ +    Ls+e++ekm +d+ k+a+eD+e++ + e+k   e    +++++l +d  kd +s++++++ ++a++++ k le+++ ++ +
  MMETSP1137-20121227|5914_1  11 AIGIDLGTTYSCVGIWQNDRVEIIANDQGNRTTPSYVAFTDS-ERMIGDAAKNQAAMNPMNTVFDAKRLIGRRFSEsaTQSDLKHFPFKVIAKDGDRPCIvvdyKGESKEFFPEEISSMVLVKMKEVAESYLGSTINNAVVTVPAYFNDSQRASTKDAGAIAGLNVLRIINEPTAAAIAYGLDKssSAERNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVqefKRKNKKdITSNARAMRRLRTACERAKRTLSSSTQTSIEIDSlfEGIDFFSSITRARFEELCMDLFRGTMEPVEKVLRDSKMSKSAVHDVVLVGGSTRIPKVQSLLSDFFNgKEPSRSINPDEAVAYGAAVQAAILSgtGSAKTEDLLLLDVTPLSLGLETAGEVMTVLIPRNTTVPTKKSQTFSTYSDNQPAVTIQVFEGERSRTKDNNKLGEFNLSGIPPMPRGVPQIDVTFDIDANGMLNVSALEKSTGKENKITITNdKSRLSKEDVEKMTADAEKYAKEDAEFKEKVEAKNALEXYCYSMKSTLGDDkvKDKISADDKAKAETAVDDALKWLEGNQLAEKE 596
                 79**************************************99.999**************************6655115666778889887666665444111134445889************************************************************************87889************************************************995553333333566777778888888999*****99988888764469*****************************************************************6489**********************933345566******************************************************************************************************************872578********************************************88733589*************9999999888776544 PP

  == domain 2    score: 79.9 bits;  conditional E-value: 5.5e-26
   TIGR01991 424 qGeRelvedcrsLarFeLrgippmaAGaarirvtfqvDadGllsvsaqekltgveakievkp.sygLsdeeiekmlkdslknaeeDmeaRalaekkveaerilealekalkad..kdLlseeelkaikaaleklekaleeddaeai 566
                 +GeR   +d+  L+ F+L+ ippm+ G+ +i+vtf++Da+G+l+vsa ek+t++e+ki++ +    Ls+ ++ekm +d+ k+a+eD+e++ + e+k   e+   +++++l +d  kd + ++++++ +aa++++ k le+++ ++ 
  MMETSP1137-20121227|5914_1 714 KGERTRTKDNNKLGEFNLSSIPPMPRGVPQIEVTFDIDANGMLNVSAVEKSTNKENKITITNdKSRLSKADVEKMTADAEKYAKEDAEFKEKVESKNALENYCYSMKSTLGDDkvKDKIPADDKAKAEAAVDDALKWLEGNQLAEK 859
                 6***********************************************************872578********************************************8873358999*****999999999999988876654 PP

>> TIGR00904  mreB: cell shape determining protein, MreB/Mrl family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.0     0.034        20       5      69 ..      12      70 ..       9      79 .. 0.76
   2 !   39.9   0.0   9.3e-14   5.4e-11     100     303 ..     147     359 ..     122     386 .. 0.75

  Alignments for each domain:
  == domain 1    score: 1.9 bits;  conditional E-value: 0.034
   TIGR00904  5 lgidlGtantlvyvkgkGivlsePsvvavekdkdakaksvlavGkeakemlgktPenikairPlk 69
                +gidlGt+   v + ++        ++a ++++  ++ s +a+ +++ +m+g + +n +a+ P+ 
  MMETSP1137-20121227|5914_1 12 IGIDLGTTYSCVGIWQNDR----VEIIANDQGN-RTTPSYVAF-TDSERMIGDAAKNQAAMNPMN 70
                899***9999885555433....3577777775.555666666.68899**************96 PP

  == domain 2    score: 39.9 bits;  conditional E-value: 9.3e-14
   TIGR00904 100 kvlicvPsgiteverravkesaksaGarevylieeplaaaiGadlPveept..gsmvvdiGGGttevavisl.gGivvsks....irvaGdeldeaiikyirrkyn.....lliGe.rtaekikieiGsayaeendeeeklevkGrdlvtGlprtleldskevlealkepvseiveavkstlektpPelaadiverGivltGGGallknldkllske 303
                 + +++vP+   + +r + k++   aG +   +i+ep aaai  +l  + ++    ++ d+GGGt +v+++++ +Gi   k+      ++G+++d+ ++++  ++++      +  + r+  ++++    a+ +  +++++  ++   l +G+    +++  +  e   +  +  +e v+++l +++   +a    + +vl GG + +  ++ lls+ 
  MMETSP1137-20121227|5914_1 147 NAVVTVPAYFNDSQRASTKDAGAIAGLNVLRIINEPTAAAIAYGLDKSSSAerNVLIFDLGGGTFDVSLLTIeEGIFEVKAtagdTHLGGEDFDNRMVNHFVQEFKrknkkDITSNaRAMRRLRTACERAKRTL-SSSTQTSIEIDSLFEGIDFFSSITRARFEELCMDLFRGTMEPVEKVLRDSKMSKSA---VHDVVLVGGSTRIPKVQSLLSDF 359
                 479**************************************99998766541156899************994599776662233689*********9987554431111134333144456777666666653.56777778888999*********************************998866654...3579999**99999999999875 PP

>> TIGR02529  EutJ: ethanolamine utilization protein EutJ family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.1   0.1   3.5e-12     2e-09      43     144 ..     127     235 ..     100     267 .. 0.81
   2 ?    2.6   0.0      0.03        18     188     217 ..     330     359 ..     309     375 .. 0.80

  Alignments for each domain:
  == domain 1    score: 35.1 bits;  conditional E-value: 3.5e-12
   TIGR02529  43 veivkrlkdklekklGieltkaaiavPPGveegdkkvivnvvesaGlevlkvldePtaaaavlqlknga.......vvdvGGGttGisilkkGkviysadeatGGthls 144
                 + ++ ++k+ +e  lG ++++a ++vP   ++++   + +    aGl+vl++++ePtaaa +  l++++       + d+GGGt  +s+l   + i+    ++G thl 
  MMETSP1137-20121227|5914_1 127 SMVLVKMKEVAESYLGSTINNAVVTVPAYFNDSQRASTKDAGAIAGLNVLRIINEPTAAAIAYGLDKSSsaernvlIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLG 235
                 5677899********************99977777777778889****************999997543222332278*********************9999999986 PP

  == domain 2    score: 2.6 bits;  conditional E-value: 0.03
   TIGR02529 188 khiekqkvkdlylvGGassfsefedvfeke 217
                 + + k+ v+d+ lvGG++ +++++++++  
  MMETSP1137-20121227|5914_1 330 SKMSKSAVHDVVLVGGSTRIPKVQSLLSDF 359
                 5678999***************99998765 PP

>> TIGR01312  XylB: xylulokinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0         1     6e+02       1      26 [.      12      38 ..      12      43 .. 0.74
   2 !   18.4   0.0   2.3e-07   0.00014     363     441 ..     314     389 ..     290     401 .. 0.76

  Alignments for each domain:
  == domain 1    score: -3.5 bits;  conditional E-value: 1
   TIGR01312  1 lGiDlgTs.svKallvdekgeviasgs 26
                +GiDlgT+ s+  +  +++ e+ia+ +
  MMETSP1137-20121227|5914_1 12 IGIDLGTTySCVGIWQNDRVEIIANDQ 38
                7*****973666677778888888766 PP

  == domain 2    score: 18.4 bits;  conditional E-value: 2.3e-07
   TIGR01312 363 dlarAvlegvafalrdsldilkelkglkikeirliGGGaksevwrqiladilglevvvpe..eeegaalGaAilAaialge 441
                 dl r ++e v   lrds   + +     +++++l+GG ++ + ++ +l d ++ +   ++   +e++a+GaA++Aai +g+
  MMETSP1137-20121227|5914_1 314 DLFRGTMEPVEKVLRDSK--MSK---SAVHDVVLVGGSTRIPKVQSLLSDFFNGKEPSRSinPDEAVAYGAAVQAAILSGT 389
                 555666666666666653..233...56899*********************97655444349*************99873 PP

>> TIGR01174  ftsA: cell division protein FtsA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0   1.5e-06    0.0009     168     341 ..     169     363 ..     155     382 .. 0.64
   2 ?   -4.1   0.3       2.3   1.4e+03      74     112 ..     757     796 ..     743     800 .. 0.63

  Alignments for each domain:
  == domain 1    score: 16.2 bits;  conditional E-value: 1.5e-06
   TIGR01174 168 eraglevdnivlsslAsakav.Lted.EkelGvvlidiGggttdiavytegsirytkvlpiggnnvt.kDl....akalktpleeAEkiKik.ygsalieleseeesve.ipsvgereerels.....kkelaeiieaRveEileivk.......qkelkksglkeelaagivltGGaaqlkgikelaekvfdkk 341
                 + agl+v +i+ ++ A+a+a  L+++   e  v++ d+Gggt d+++ t ++ ++      g +++  +D      + +  +++   k  i+  + a+  l ++ e  +   s  +++++e+       +  ++i +aR eE+ + +        +k l++s+++++  + +vl GG +++  +++l ++ f+ k
  MMETSP1137-20121227|5914_1 169 AIAGLNVLRIINEPTAAAIAYgLDKSsSAERNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGgEDFdnrmVNHFVQEFKRKNKKDITsNARAMRRLRTACERAKrTLSSSTQTSIEIDslfegIDFFSSITRARFEELCMDLFrgtmepvEKVLRDSKMSKSAVHDVVLVGGSTRIPKVQSLLSDFFNGK 363
                 568999999******99999647654256788999**********9998777666666666655553244410003333333333333222212334444322222222011112222222221111134567899999999876666677778789*******8888889*******************99854 PP

  == domain 2    score: -4.1 bits;  conditional E-value: 2.3
   TIGR01174  74 slsgahiksqnskgvvaikdk.evtqediervleaakava 112
                 ++s  + ++++++ +  ++dk  + + d+e++ + a+  a
  MMETSP1137-20121227|5914_1 757 NVSAVEKSTNKENKITITNDKsRLSKADVEKMTADAEKYA 796
                 4444444444455555555555788888888888777655 PP

>> TIGR03112  6_pyr_pter_rel: 6-pyruvoyl tetrahydropterin synthase-related domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.0   0.0   0.00062      0.37      45      86 ..     575     616 ..     565     619 .. 0.90
   2 !    8.7   0.0   0.00078      0.46      46      86 ..     840     880 ..     835     883 .. 0.90

  Alignments for each domain:
  == domain 1    score: 9.0 bits;  conditional E-value: 0.00062
   TIGR03112  45 dvEkkvekylkkyedkylnklepFdklnptlEnlgkylfdei 86 
                 + E +v++ lk +e++ l ++e+F+++   +E ++  +++ +
  MMETSP1137-20121227|5914_1 575 KAETAVDDALKWLEGNQLAEKEEFEHKRKEVEGICTPIMTAM 616
                 5699*******************************8777665 PP

  == domain 2    score: 8.7 bits;  conditional E-value: 0.00078
   TIGR03112  46 vEkkvekylkkyedkylnklepFdklnptlEnlgkylfdei 86 
                  E +v++ lk +e++ l ++e+F+++   +E ++  +++ +
  MMETSP1137-20121227|5914_1 840 AEAAVDDALKWLEGNQLAEKEEFEHKRKEVEGICTPIMTAM 880
                 6999******************************8777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (919 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       191  (0.0465627); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.67u 0.15s 00:00:00.82 Elapsed: 00:00:01.19
# Mc/sec: 1019.31
//
Query:       MMETSP1137-20121227|5915_1  [L=443]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (443 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       117  (0.0285227); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.18s 00:00:00.50 Elapsed: 00:00:00.67
# Mc/sec: 872.70
//
Query:       MMETSP1137-20121227|5916_1  [L=832]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.1e-27   94.1   1.5    1.8e-23   81.2   0.0    3.9  4  TIGR00233 trpS: tryptophan--tRNA ligase
    1.2e-21   75.1   0.0    2.2e-21   74.3   0.0    1.3  1  TIGR00234 tyrS: tyrosine--tRNA ligase


Domain annotation for each model (and alignments):
>> TIGR00233  trpS: tryptophan--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.2   0.0   8.8e-27   1.8e-23       2     230 ..     150     378 ..     149     388 .. 0.83
   2 !    2.4   0.0    0.0082        17     263     303 ..     428     470 ..     417     487 .. 0.76
   3 ?    0.3   0.0     0.037        76     106     222 ..     611     725 ..     578     731 .. 0.65
   4 !    5.7   0.1   0.00081       1.7     258     310 ..     771     823 ..     761     832 .] 0.73

  Alignments for each domain:
  == domain 1    score: 81.2 bits;  conditional E-value: 8.8e-27
   TIGR00233   2 kkrvltGiqpsGklhlGnylg.airtkveqqeevelfiqvaDlhaitvkkl.tdeealrkaveelvadilAvGlDpekttiflqs.evpehselavlls....kkvtlgelkritqfkdksqeenvsiGllsypvlqaAdiLlyqadlVPvgeDqkqhleltRdlaerfnkkfkkvfklPelliskffarlmglqdkKMSkSdpnsaIfLtdepkeikkKikkaatdsgretleee 230
                 +++++ G++psG++h+   +  a+++    q +   ++ vaD  a++ +k+  d e ++   + l+  + A G+D++ +++   s e+++h +  + l+    ++ t++++ ++ q+ +++ e  ++ + + yp++q  di+  +ad+   g Dq +   l+R+  +    k      +P +l +++  +l   q  KMSkS+ +saIf++d+++e+  K+++a+   ++  +e++
  MMETSP1137-20121227|5916_1 150 NFVLYDGFEPSGRMHIAQGVFkAMNVNKCTQTGGTFIFWVADWFALMNDKMgGDLERIKTVGHYLIHVWTAAGMDMQRVKFLWSSeEITKHAKDYWTLAlditRRFTVARITKCCQIMGRA-EGTLTAAQILYPLMQCTDIFFLKADICQLGVDQRKVNMLAREYCDSAGIK-----LKPIILSHHMLYGLSKGQA-KMSKSNRDSAIFMEDPADEVARKLRQAYCPTQEGEVEDK 378
                 5899************98765155555555********************625778888889999*************8876666257788887777651111566788889999999988.666*********************************************54.....4599999999777777666.**************************9887776555544 PP

  == domain 2    score: 2.4 bits;  conditional E-value: 0.0082
   TIGR00233 263 eksgkllygelKkalievlqeflkelqekreevaee..eldki 303
                  +sg+l   +lK+ li +++ +l+++++ ++e ae   +l +i
  MMETSP1137-20121227|5916_1 428 FVSGALDEAQLKEGLILAVNGLLEPVRKHFSEDAEAkrILAQI 470
                 5678888999*******************97665544434333 PP

  == domain 3    score: 0.3 bits;  conditional E-value: 0.037
   TIGR00233 106 kritqfkdksqeenvsiGllsypvlqaAdiLlyqad....lVPvgeDqkqhleltRdlaerfnkkfkkvfklPel.liskffarlmglqdkKMSkSdpnsaIfLtdepkeikkKikkaatds 222
                 ++i ++ +++     ++G +  +++q Ad+L+  +      + +   q++ l+l+ d    +++   +++k P++  + +   rl+  +       d+++  +L+d   ++  K+kka  ++
  MMETSP1137-20121227|5916_1 611 SAIRAIDEST----QEVGQVITSLMQMADVLSLASAtnerSIYCLSEQQPLLQLAADYIGAMKD---SMLKAPSVnALPRASMRLKAPHADGAAVPDDDAELMLLDGVPDVTRKMKKAFCEP 725
                 3344444443....5799999999******9887767889999999999999999998777774...4555555412334444444444333334555566666666666666666666555 PP

  == domain 4    score: 5.7 bits;  conditional E-value: 0.00081
   TIGR00233 258 edlekeksgkllygelKkalievlqeflkelqekreevaeeeldkileagakk 310
                 e  e+  +gk+  g+lK a+ ++++  l+  q+k +e a  +++k l + ak+
  MMETSP1137-20121227|5916_1 771 ELAEEFAAGKVHPGDLKPAVRDAVIPILQRAQQKLKEPALAKAEKELVKVAKR 823
                 445666789999***********************998777555554443333 PP

>> TIGR00234  tyrS: tyrosine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.3   0.0   1.1e-24   2.2e-21       7     289 ..     125     387 ..     120     404 .. 0.83

  Alignments for each domain:
  == domain 1    score: 74.3 bits;  conditional E-value: 1.1e-24
   TIGR00234   7 lkelkkrgleeivseeeeelekklkkneklklylGvdPtaqslHlGhlv.plkkLrdfqqaGhevvvligdataligdpsgkkevrkvleeeevqenaesikkqlarfldfdkgklkfvnnsewlkk..lnyldfirdlgkifsvnrmlardafssRleenglslsefiYpllQayDfvaLdkddlqlGGsDQwgNilagidLirrnlps.kkqfgltvpLltkadGekmGkseggavsldesspydfyqkvintpdelvkkilklftflgleeieklveekspslr 289
                 l++l   g+e +++ e+++l +k+    ++ ly G++P++ ++H+   v   +   +  q G + ++ ++d  al++d+ g + +r            + i    a ++d+  +++kf   se ++k   +y ++  d+ + f+v+r+ +  ++  R e   l+ ++++Ypl+Q  D+ +L++d +ql G+DQ    ++  +L+r++  s +   +l   +l     ++ G+s+g a +++++   d+ +++ + +de+ +k  +++++ ++ e+e+  +e+s +l 
  MMETSP1137-20121227|5916_1 125 LQTLLSVGEECVTPTELRNLLTKKP---NFVLYDGFEPSG-RMHIAQGVfKAMNVNKCTQTGGTFIFWVADWFALMNDKMGGDLERIKTV----G--HYLIHVWTAAGMDM--QRVKFLWSSEEITKhaKDYWTLALDITRRFTVARITKCCQIMGRAEGT-LTAAQILYPLMQCTDIFFLKADICQL-GVDQ----RKVNMLAREYCDSaG--IKLKPIILSH--HMLYGLSKGQAKMSKSN--RDSAIFMEDPADEVARKLRQAYCPTQEGEVEDKPDEESMHLT 387
                 6778888999999998888888887...6***********.****987734677899999******************988776663333....2..47889999999995..46999988887765337999***************************7.*********************99999.5***....************844..4444333333..6******9976555444..7****************************9987777776665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (832 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       200  (0.0487567); expected 82.0 (0.02)
Passed bias filter:                      117  (0.0285227); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.55u 0.13s 00:00:00.68 Elapsed: 00:00:00.72
# Mc/sec: 1525.21
//
Query:       MMETSP1137-20121227|5917_1  [L=564]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (564 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        45  (0.0109703); expected 82.0 (0.02)
Passed bias filter:                       41  (0.00999512); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.10s 00:00:00.44 Elapsed: 00:00:00.96
# Mc/sec: 775.44
//
Query:       MMETSP1137-20121227|5918_1  [L=162]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (162 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       186  (0.0453437); expected 82.0 (0.02)
Passed bias filter:                      105  (0.0255973); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.13s 00:00:00.31 Elapsed: 00:00:00.64
# Mc/sec: 334.10
//
Query:       MMETSP1137-20121227|5919_1  [L=567]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.8e-14   49.6   0.7    3.2e-11   40.2   0.0    2.2  2  TIGR01480 copper_res_A: copper-resistance protein, CopA family
    1.1e-10   38.7   3.1      2e-09   34.5   0.4    2.5  2  TIGR03388 ascorbase: L-ascorbate oxidase
    2.2e-07   28.3   2.2    1.3e-05   22.6   1.5    2.5  1  TIGR02376 Cu_nitrite_red: nitrite reductase, copper-containing
    2.6e-07   27.6   2.8    0.00025   17.8   0.4    2.8  2  TIGR03389 laccase: laccase
    0.00016   18.2   7.2     0.0021   14.5   2.7    3.1  3  TIGR03390 ascorbOXfungal: L-ascorbate oxidase


Domain annotation for each model (and alignments):
>> TIGR01480  copper_res_A: copper-resistance protein, CopA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.2   0.0   3.9e-14   3.2e-11      20     170 ..       5     177 ..       2     190 .. 0.80
   2 !    7.9   0.0   0.00025       0.2     558     592 ..     492     527 ..     413     528 .. 0.82

  Alignments for each domain:
  == domain 1    score: 40.2 bits;  conditional E-value: 3.9e-14
   TIGR01480  20 vvaglglwataawaekselpesvlsgteldlaigesvvnftGrarvaitvngslPgPllrwreGdtvklrvtntld.................eetsihwhGillPaqmdGvPGlsfaGiapGetftyrfkv...eqsGtywyhsh...sa.fqeqaGlyGalvi.dPleedpvra 170
                 v+a ++l+a+aa a    +  +  +   + l+++ s++ ++ +++ +   n+s+PgP++r r  dt+ + + n l+                 ++t +h hG+ +  +       +f+ + pG t+ty +++   +  Gt+wyh h   s+ +q   G +G lv+ dP +  p++ 
  MMETSP1137-20121227|5919_1   5 VAAKTALLARAARAGAXMA-LAESQVVYVRLVLAASTIVLQNTTQRTRLYNNSFPGPTIRVRPNDTLVITLQNGLEqeafdteqvlfnhfrspNTTGLHLHGLHVSPRPP--ADDAFHVVPPGATYTYTYHIpadHAPGTFWYHPHhhgSGyMQVGGGAFGMLVVeDPPSTLPLAL 177
                 5566666666665544433.2334456789999***********999****************************99*************99999********8866543..24589*************99655678******984443336788899**999856766666655 PP

  == domain 2    score: 7.9 bits;  conditional E-value: 0.00025
   TIGR01480 558 skvsfrvradal.GrwayhchlllhmeaGmlrevkv 592
                 + v+ r+++d   Gr  +hch l h + Gml ++ v
  MMETSP1137-20121227|5919_1 492 AAVAVRMQTDRFgGRVPFHCHNLRHEDLGMLGVIDV 527
                 45677888998735889**************98876 PP

>> TIGR03388  ascorbase: L-ascorbate oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.5   0.4   2.5e-12     2e-09      26     124 ..      54     171 ..      46     190 .. 0.73
   2 !    3.7   0.1    0.0052       4.3     481     521 ..     489     525 ..     395     532 .. 0.70

  Alignments for each domain:
  == domain 1    score: 34.5 bits;  conditional E-value: 2.5e-12
   TIGR03388  26 nGkfpGptirakaGdtivvelknkll.....tegvv...........ihwhGirqiGtpwadGtagvtqcainpgetfiykfvv...dkpGtylyhghy.G...mqrsaGlyGslivevadg 124
                 n  fpGptir +  dt+v+ l+n l      te+v            +h hG++    p ad +  v    + pg t++y++ +     pGt+ yh h+ G   mq   G +G+l+ve + +
  MMETSP1137-20121227|5919_1  54 NNSFPGPTIRVRPNDTLVITLQNGLEqeafdTEQVLfnhfrspnttgLHLHGLHVSPRPPADDAFHV----VPPGATYTYTYHIpadHAPGTFWYHPHHhGsgyMQVGGGAFGMLVVEDPPS 171
                 889********************98622222555532222223333379999999999999998876....6799999999987443469******876346679************87643 PP

  == domain 2    score: 3.7 bits;  conditional E-value: 0.0052
   TIGR03388 481 rntvvvfpyGwtalrfradnpG.vwafhchieshlfmGm.Gvv 521
                   t++       a+r+++d  G    fhch   h  +Gm Gv+
  MMETSP1137-20121227|5919_1 489 WGTAA------VAVRMQTDRFGgRVPFHCHNLRHEDLGMlGVI 525
                 44444......489*****9761568**********9995665 PP

>> TIGR02376  Cu_nitrite_red: nitrite reductase, copper-containing
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.6   1.5   1.5e-08   1.3e-05      18     151 ..      20     174 ..       5     189 .. 0.70

  Alignments for each domain:
  == domain 1    score: 22.6 bits;  conditional E-value: 1.5e-08
   TIGR02376  18 eqvdrsePkvveveltieekkleidegvelqamtfdgsvPGplivvregDtveltlvn..................peentlphnvDfhaatGalGGaaltlvnPGetavlrFk..a.tkpGafvYhCavegmvdmhvssGmnGlilvl.PreGLk 151
                   ++  e +vv v+l     ++++++ ++ +   +++s PGp+i+vr +Dt+ +tl+n                   ++ t  h   +h    +    a  +v PG t ++ +   a   pG+f Yh   +g   m v  G +G+++v+ P+  L+
  MMETSP1137-20121227|5919_1  20 AXMALAESQVVYVRLVLAASTIVLQN-TTQRTRLYNNSFPGPTIRVRPNDTLVITLQNgleqeafdteqvlfnhfrSPNTTGLHLHGLHVSPRPPADDAFHVVPPGATYTYTYHipAdHAPGTFWYHPHHHGSGYMQVGGGAFGMLVVEdPPSTLP 174
                 55666788899999999999999875.5667788**********************994432222111111111111112223444555566666777888999***99988863342469**********9999************975666665 PP

>> TIGR03389  laccase: laccase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.4   3.1e-07   0.00025      23     108 ..      49     149 ..      31     272 .. 0.71
   2 !    8.2   0.0   0.00024       0.2     397     514 ..     407     522 ..     393     536 .. 0.76

  Alignments for each domain:
  == domain 1    score: 17.8 bits;  conditional E-value: 3.1e-07
   TIGR03389  23 siltvngkfPGPtlkareGdkvvvkvtnrvky................n.vtlhwhGvrqlrngwadGPeyitqcPirpGqsyvykftitgqr..gtlfwhahis 108
                      n  fPGPt+++r  d++v+ ++n +++                n   lh hG++    + ad   ++    + pG +y+y ++i +++  gt+++h h +
  MMETSP1137-20121227|5919_1  49 RTRLYNNSFPGPTIRVRPNDTLVITLQNGLEQeafdteqvlfnhfrspNtTGLHLHGLHVSPRPPADDAFHV----VPPGATYTYTYHIPADHapGTFWYHPHHH 149
                 4455799******************9996543112222222222222231459******9999999998877....45777777777776554339*****9965 PP

  == domain 2    score: 8.2 bits;  conditional E-value: 0.00024
   TIGR03389 397 fnytgenlpknletskgtkvvrlkfnstvelvlqd..tsilaseshplhlhGynffv..vGkGfGnfdpkkdpakfnlvdPverntvgvPtaGwvairfradnPGvwl.lhchlevhltwGlk 514
                 + ++g +  +  + + g    +l+ +++vel l +  + +++   h +h+h + f +  v  G G + +  d +   l  P +  t +v      a+r+++d  G  + +hch  +h   G+ 
  MMETSP1137-20121227|5919_1 407 LRFAGMSRINGRKFAAGETALTLAVGTVVELRLEGvgAGLVSGVGHIFHVHAFPFQLmsVPDGAGGYFAVGDWHD-TLRAPRSWGTAAV------AVRMQTDRFGGRVpFHCHNLRHEDLGML 522
                 556666666666667788889999*********97225789999********99976336789999998888654.5777877777765......7899999876554389999999999985 PP

>> TIGR03390  ascorbOXfungal: L-ascorbate oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   2.7   2.5e-06    0.0021      17     129 ..      39     168 ..      29     173 .. 0.68
   2 ?   -3.6   0.0      0.73     6e+02     403     451 ..     416     461 ..     381     476 .. 0.54
   3 ?    2.4   0.0     0.011       9.1     502     534 ..     497     531 ..     481     534 .. 0.69

  Alignments for each domain:
  == domain 1    score: 14.5 bits;  conditional E-value: 2.5e-06
   TIGR03390  17 vknikeacssresvvvnGtsPGPelrlqegqrtwirvyndlede...............nvt.lhwhgltartapfsdGtpaasqwPiPpGhffdyevkteleda.Gsyfyhshv...g.lqav.taaGalived 129
                 ++ + ++ ++r + + n ++PGP++r++++++  i + n le+e               n+t lh hgl     p +d + ++    +PpG  + y  +   ++a G+++yh h    g +q+   a+G l+ved
  MMETSP1137-20121227|5919_1  39 STIVLQNTTQR-TRLYNNSFPGPTIRVRPNDTLVITLQNGLEQEafdteqvlfnhfrspNTTgLHLHGLHVSPRPPADDAFHV----VPPGATYTYTYHIPADHApGTFWYHPHHhgsGyMQVGgGAFGMLVVED 168
                 44555565555.56899*****************9999888875222222222222222444478888888888888877654....8*****99999988887769*****98522233443235888999987 PP

  == domain 2    score: -3.6 bits;  conditional E-value: 0.73
   TIGR03390 403 anygfdpetrlfPakvgevleivlqnrgsltgenggvdthPfhahGrhf 451
                 ++  f     ++   vg v+e+ l+  g+  +   gv  h fh+h   f
  MMETSP1137-20121227|5919_1 416 NGRKFAAGETALTLAVGTVVELRLEGVGAGLV--SGV-GHIFHVHAFPF 461
                 45556666666666777788887777775333..222.25555554433 PP

  == domain 3    score: 2.4 bits;  conditional E-value: 0.011
   TIGR03390 502 rirvtnp.GvwmvhchvlqhmvmGmetvf.vfgda 534
                 r++  +  G   +hch l+h  +Gm  v  v+gd+
  MMETSP1137-20121227|5919_1 497 RMQTDRFgGRVPFHCHNLRHEDLGMLGVIdVVGDE 531
                 4444444144558************8876477775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (567 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        93  (0.0226719); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.46u 0.13s 00:00:00.59 Elapsed: 00:00:00.70
# Mc/sec: 1069.11
//
Query:       MMETSP1137-20121227|5920_1  [L=412]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0011   16.3   0.0     0.0032   14.8   0.0    1.7  1  TIGR03695 menH_SHCHC: 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase
     0.0021   15.6   0.1       0.14    9.6   0.1    2.2  1  TIGR01738 bioH: putative pimeloyl-BioC--CoA transferase BioH


Domain annotation for each model (and alignments):
>> TIGR03695  menH_SHCHC: 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   1.6e-06    0.0032       5      93 ..     134     235 ..     130     242 .. 0.69

  Alignments for each domain:
  == domain 1    score: 14.8 bits;  conditional E-value: 1.6e-06
   TIGR03695   5 lvlLHGflgskedwqalieeleekfsvlalDLpgHGks.............kslkekeakdfeeaaqellkelleklkiekviLvGYSlGGRialalaleap 93 
                 l+ L G  + + + q+ i++  e ++v ++DLpgHG               +  ++  +++ ++ +++l++e+l++ ++ ++ L+G+S G+ i  ++a++  
  MMETSP1137-20121227|5920_1 134 LFALYGXADVAMSLQPWIDRAPEWLEVRLVDLPGHGFRqrdsallscaeqgQLNESALVAQRAQLVRHLSDEILKSADEAPFALYGFSFGALIMFEIAANLC 235
                 556777777777777777777777888899******76222222222111111222334556677888999999999**************99999988765 PP

>> TIGR01738  bioH: putative pimeloyl-BioC--CoA transferase BioH
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.6   0.1   6.6e-05      0.14       6      49 ..     133     176 ..     128     263 .. 0.61

  Alignments for each domain:
  == domain 1    score: 9.6 bits;  conditional E-value: 6.6e-05
   TIGR01738   6 klvLihGWglnaevfadlveeLsahftlslvDLPGyGdsaelra 49 
                 +l+ ++G +  a   ++ +++ ++  ++ lvDLPG+G  +  +a
  MMETSP1137-20121227|5920_1 133 RLFALYGXADVAMSLQPWIDRAPEWLEVRLVDLPGHGFRQRDSA 176
                 555666666666667777788888889999*****997443322 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (412 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        83  (0.020234); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.31u 0.16s 00:00:00.47 Elapsed: 00:00:00.46
# Mc/sec: 1182.16
//
Query:       MMETSP1137-20121227|5921_1  [L=405]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (405 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        70  (0.0170648); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.15s 00:00:00.44 Elapsed: 00:00:00.49
# Mc/sec: 1090.93
//
Query:       MMETSP1137-20121227|5922_1  [L=275]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (275 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        76  (0.0185275); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.13s 00:00:00.36 Elapsed: 00:00:00.35
# Mc/sec: 1037.06
//
Query:       MMETSP1137-20121227|5923_1  [L=378]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (378 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        97  (0.023647); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.15s 00:00:00.43 Elapsed: 00:00:00.42
# Mc/sec: 1187.90
//
Query:       MMETSP1137-20121227|5924_1  [L=350]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.8e-48  162.3   0.1    1.1e-26   91.6   0.0    2.1  2  TIGR01459 HAD-SF-IIA-hyp4: HAD hydrolase, TIGR01459 family
    1.4e-26   91.6   0.0    6.3e-26   89.5   0.0    1.8  1  TIGR01460 HAD-SF-IIA: HAD hydrolase, family IIA
    1.4e-15   55.3   0.0    5.2e-15   53.4   0.0    1.7  1  TIGR01452 PGP_euk: phosphoglycolate/pyridoxal phosphate phosphatase family
    3.7e-10   37.4   0.0    0.00011   19.5   0.0    2.1  2  TIGR01458 HAD-SF-IIA-hyp3: HAD hydrolase, TIGR01458 family
    7.8e-10   36.5   0.0    2.5e-08   31.6   0.0    2.1  1  TIGR01457 HAD-SF-IIA-hyp2: HAD hydrolase, TIGR01457 family
    8.2e-08   29.8   0.0    3.2e-06   24.6   0.0    2.2  2  TIGR02254 YjjG/YfnB: HAD hydrolase, TIGR02254 family
    1.3e-06   26.8   0.0    0.00019   19.7   0.0    2.3  2  TIGR01549 HAD-SF-IA-v1: HAD hydrolase, family IA, variant 1
    1.7e-06   25.5   0.0    5.8e-05   20.5   0.0    2.1  2  TIGR01668 YqeG_hyp_ppase: HAD phosphatase, family IIIA
    3.4e-06   24.8   0.0    6.1e-06   24.0   0.0    1.3  1  TIGR02253 CTE7: HAD hydrolase, TIGR02253 family
    6.1e-06   23.1   0.1      0.037   10.7   0.0    2.2  2  TIGR01456 CECR5: HAD hydrolase, TIGR01456 family
    7.2e-06   23.7   0.0    4.5e-05   21.1   0.0    2.0  2  TIGR02252 DREG-2: HAD hydrolase, REG-2-like, family IA
    0.00012   20.0   0.0     0.0056   14.5   0.0    2.4  2  TIGR01428 HAD_type_II: haloacid dehalogenase, type II
      0.003   15.5   0.0      0.087   10.8   0.0    2.2  2  TIGR01662 HAD-SF-IIIA: HAD hydrolase, family IIIA


Domain annotation for each model (and alignments):
>> TIGR01459  HAD-SF-IIA-hyp4: HAD hydrolase, TIGR01459 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.0   0.0   2.7e-22   8.6e-20       2      86 ..      51     135 ..      50     190 .. 0.91
   2 !   91.6   0.0   3.4e-29   1.1e-26     147     241 ..     208     304 ..     192     305 .. 0.91

  Alignments for each domain:
  == domain 1    score: 69.0 bits;  conditional E-value: 2.7e-22
   TIGR01459   2 edliedYdvFLlDlwGvvidGqeayPGavealaklkaegktvylvsnssksvaeleatlkklGiaadlfegivssGevavrside 86 
                  +l  +Yd+ +lD++Gv++dGq a PGa++ + +l   +k+v ++sn+s++      +l +lG+  +   g+v+sGe a++ +  
  MMETSP1137-20121227|5924_1  51 SKLSTQYDAIILDQFGVLHDGQRALPGALHCFDQLVSSKKAVLVLSNASRRRSAAVSKLARLGFDVSALSGFVTSGEEAWQHMAS 135
                 578899**************************************************************************98754 PP

  == domain 2    score: 91.6 bits;  conditional E-value: 3.4e-29
   TIGR01459 147 laplaarkvpflCanPDrvvvs.agrtrygaGelaelfeelGGkviyvGkPypaifdkalkel.eerekrrvllvGDslvtDiaganavgidtalvl 241
                 l    ar++p++CanPD+ +    g+  y  G la ++eelGG+v y GkP+ a+fd+ ++ + ++ ++ rvl vGDslv+Diagan++g+d++++ 
  MMETSP1137-20121227|5924_1 208 LGECIARDLPMICANPDLYLAMpDGKRGYMPGLLAKKYEELGGRVRYFGKPHSAAFDACMRVIgSDVPRSRVLHVGDSLVHDIAGANRAGVDSLFIA 304
                 555689************9865278888*********************************983578**************************9986 PP

>> TIGR01460  HAD-SF-IIA: HAD hydrolase, family IIA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.5   0.0     2e-28   6.3e-26       1     246 []      60     306 ..      60     306 .. 0.79

  Alignments for each domain:
  == domain 1    score: 89.5 bits;  conditional E-value: 2e-28
   TIGR01460   1 flfDidGVlvrgkkpipgalealnrlrakgkpvvfvTNnsgrseedlaeklssllgvdvspe.qiitshsvtkellk.kfenervlligegelreslenlgfknvvtvddlrkivedidvedleaekiqaavlvgepsdlsydelakaakllseg................kvpfiaaneeklerlgdgafrlglgsilekikeksgreeivvGKPspalykaaeellkarakrrkvlmvGDnlrtDvlgAkeaGldslLvltG 246
                 +++D  GVl++g+++ pgal  +++l+ ++k v+ ++N+s r +++  +kl + lg+dvs++  ++ts++ + + ++ + ++++ + +  ++  ++ ++              ++  +d+ + +ae  + ++  g++  l+ d+ a+ ++l+++g                ++p+i+an +      dg   +  g +++k++e++gr++ ++GKP+ a+++a  ++++ +  r++vl vGD+l+ D+ gA++aG+dsl++ +G
  MMETSP1137-20121227|5924_1  60 IILDQFGVLHDGQRALPGALHCFDQLVSSKKAVLVLSNAS-RRRSAAVSKLAR-LGFDVSALsGFVTSGEEAWQHMAsEMRGKKAVWFTWEQGYNNFNDD-------------YTSGLDLKFTNAEEADFVLCQGSQLVLQ-DDGATPIELMRSGrfcavaekvlgeciarDLPMICANPDLYLAMPDGKRGYMPGLLAKKYEELGGRVR-YFGKPHSAAFDACMRVIGSDVPRSRVLHVGDSLVHDIAGANRAGVDSLFIAAG 306
                 68999**********************************9.99**********.******9626899987665555537776666666555443333332.............2333333344455555555555555444.4455666666666688888899***************53344556888889999**************.*******************999999*************************998 PP

>> TIGR01452  PGP_euk: phosphoglycolate/pyridoxal phosphate phosphatase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.4   0.0   1.7e-17   5.2e-15       3     252 ..      58     309 ..      56     326 .. 0.80

  Alignments for each domain:
  == domain 1    score: 53.4 bits;  conditional E-value: 1.7e-17
   TIGR01452   3 etfifdcdGvlWlGekvvpGaPelldrlakagkkvlfvtnnstksraeyakklaklGlnsva.eelvssalvaaalleraidankkvyviGeeGlreeld..ekGiry.vGdpsekdkkaarksgefmkleedvgavvvGydkhfdyvklrkas..aylrepgvllvatnrdevtplsdeseipgaGslvaaiktasgreplvvGkPsdfmleyikekls..idPartlmvGdrletdilfGkdgGlktvlvlsGvsr 252
                 +++i+d  Gvl  G++++pGa + +d+l+   k+vl+++n s++ r+  ++kla+lG++ +a   +v+s   a + + + +  +k+v+   e+G  +  d  + G+ + + ++ e+d    ++s   ++ +   ga  +   +   +  + +     ++   +  ++ +n d    ++d+++    G l+   +   gr     GkP + +++   + ++  +  +r+l vGd l  di   +++G+  +++ +G++ 
  MMETSP1137-20121227|5924_1  58 DAIILDQFGVLHDGQRALPGALHCFDQLVSSKKAVLVLSNASRR-RSAAVSKLARLGFDVSAlSGFVTSGEEAWQHMASEMRGKKAVWFTWEQGYNNFNDdyTSGLDLkFTNAEEADFVLCQGSQLVLQDD---GATPIELMRSGRFCAVAEKVlgECIA-RDLPMICANPDLYLAMPDGKRGYMPGLLAKKYEELGGRVR-YFGKPHSAAFDACMRVIGsdVPRSRVLHVGDSLVHDIAGANRAGVDSLFIAAGIHA 309
                 789***********************************998876.77889********98773568889999999999999*************9876652257998735666667777777665555544...55555555555555554433113443.45567889*************************9999976.58*********99999872255699*****************************93 PP

>> TIGR01458  HAD-SF-IIA-hyp3: HAD hydrolase, TIGR01458 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   4.1e-06    0.0013       3      67 ..      59     118 ..      57     160 .. 0.86
   2 !   19.5   0.0   3.3e-07   0.00011     173     227 ..     251     307 ..     237     332 .. 0.85

  Alignments for each domain:
  == domain 1    score: 15.9 bits;  conditional E-value: 4.1e-06
   TIGR01458   3 gvlldisGvlydsdaksgvavpgsaeavkrlkraslkvrfvtnekkeskrelverlqrlgfdise 67 
                 +++ld  Gvl+d +     a+pg+    ++l  ++  v  ++n++++ +   v +l rlgfd+s 
  MMETSP1137-20121227|5924_1  59 AIILDQFGVLHDGQR----ALPGALHCFDQLVSSKKAVLVLSNASRR-RSAAVSKLARLGFDVSA 118
                 789*********999....****************99999***9987.5567899********96 PP

  == domain 2    score: 19.5 bits;  conditional E-value: 3.3e-07
   TIGR01458 173 kaevvGkPskeffkealralGve..peeavmiGddlvddvGGaqavGmrgvqvrtGk 227
                 ++   GkP+   f  ++r +G +    +++ +Gd lv d+ Ga + G+ ++ + +G 
  MMETSP1137-20121227|5924_1 251 RVRYFGKPHSAAFDACMRVIGSDvpRSRVLHVGDSLVHDIAGANRAGVDSLFIAAGI 307
                 67889****************8731356778******************99998885 PP

>> TIGR01457  HAD-SF-IIA-hyp2: HAD hydrolase, TIGR01457 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.6   0.0   7.9e-11   2.5e-08       1     230 [.      57     311 ..      57     323 .. 0.69

  Alignments for each domain:
  == domain 1    score: 31.6 bits;  conditional E-value: 7.9e-11
   TIGR01457   1 ykGylidldGtlykGkekieeavefvkelkkrdvpylfvtnnstrtpesvaellas.ldipatkeqvftaslatadyla.dlkkeksvyviGeeGlkeaike..aGlvvd...dekpdyvvvG.......ldraisye.....kl...akaal..airkGakfistngdl..aipt.erGllpGnGsliavlevatgvkpvviGkpeaiilekalkrlGte..keetllvGdnyatdilaGidaGidtllvhtGvtkke 230
                 y   ++d  G l+ G+  ++ a +   +l   + + l ++n s r   +v++l    +d+ a    v t+     +++a +++ +k+v+   e+G ++  ++  +Gl  +    e++d+v+          d a   e     ++   a  +l   i +   +i +n+dl  a+p  +rG +pG   l+       g +  + Gkp++  ++  ++++G +  ++ +l vGd    di     aG+d+l++ +G+   e
  MMETSP1137-20121227|5924_1  57 YDAIILDQFGVLHDGQRALPGALHCFDQLVSSKKAVLVLSNASRRRSAAVSKLARLgFDVSALSGFV-TSGEEAWQHMAsEMRGKKAVWFTWEQGYNNFNDDytSGLDLKftnAEEADFVLCQgsqlvlqDDGATPIElmrsgRFcavAEKVLgeCIARDLPMICANPDLylAMPDgKRGYMPGL--LA-KKYEELGGRVRYFGKPHSAAFDACMRVIGSDvpRSRVLHVGDSLVHDIAGANRAGVDSLFIAAGIHADE 311
                 56677888899999********999999999999999999988888888877665568888876666.4555555666515677888999999999876654336764332248999*99753111111123232222111112210022222223556667999****7336674379****84..33.3334445555699****************98446899***********99999***********97765 PP

>> TIGR02254  YjjG/YfnB: HAD hydrolase, TIGR02254 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.0     0.046        14      72     123 ..      50     100 ..      41     121 .. 0.76
   2 !   24.6   0.0     1e-08   3.2e-06     151     212 ..     256     319 ..     252     336 .. 0.88

  Alignments for each domain:
  == domain 1    score: 2.9 bits;  conditional E-value: 0.046
   TIGR02254  72 lkelnteaDelklnkefleileekarllpgAlelleaLkkk.lrlyivtnGvr 123
                 l +l t+ D   l  +   +l + +r lpgAl  +++L      + +++n  r
  MMETSP1137-20121227|5924_1  50 LSKLSTQYDAIIL--DQFGVLHDGQRALPGALHCFDQLVSSkKAVLVLSNASR 100
                 6677777784333..3457899*************999765378999999766 PP

  == domain 2    score: 24.6 bits;  conditional E-value: 1e-08
   TIGR02254 151 ekPdkkiFafaleri..klkkeevlmvGDsleaDikGaanaGldtvwlnpdrkpkpddiapaye 212
                  kP+   F+  +  i  ++ +++vl vGDsl  Di Ga+ aG+d+ ++ +  ++   +++pa++
  MMETSP1137-20121227|5924_1 256 GKPHSAAFDACMRVIgsDVPRSRVLHVGDSLVHDIAGANRAGVDSLFIAAGIHADEIGVTPAHI 319
                 699999999999988878999*****************************99997777888875 PP

>> TIGR01549  HAD-SF-IA-v1: HAD hydrolase, family IA, variant 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   0.0     0.023       7.4      33     108 ..      44     121 ..      37     141 .. 0.87
   2 !   19.7   0.0     6e-07   0.00019     112     149 .]     256     297 ..     241     297 .. 0.85

  Alignments for each domain:
  == domain 1    score: 4.8 bits;  conditional E-value: 0.023
   TIGR01549  33 rlkalrlaeellkriatsleelqgleaeeayledakellkel..agyrlgiiSngslraqklllrkledyfelilvsd 108
                 +++a+rl+  +++  a+ l+++  l +++  l++a   + +l  +++++ ++Sn+s+r++  + ++ +  f+  ++s+
  MMETSP1137-20121227|5924_1  44 AFSAARLSKLSTQYDAIILDQFGVLHDGQRALPGALHCFDQLvsSKKAVLVLSNASRRRSAAVSKLARLGFDVSALSG 121
                 789999999999999999999999999999999999999987446788999***********9999888888877776 PP

  == domain 2    score: 19.7 bits;  conditional E-value: 6e-07
   TIGR01549 112 sKpepeiflaaleslgle...pevlhvGDn.lsDieaaknag 149
                 +Kp++++f+a+++ +g +   ++vlhvGD+ ++Di++a +ag
  MMETSP1137-20121227|5924_1 256 GKPHSAAFDACMRVIGSDvprSRVLHVGDSlVHDIAGANRAG 297
                 6************9997544479****************998 PP

>> TIGR01668  YqeG_hyp_ppase: HAD phosphatase, family IIIA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.0     0.052        17      38      83 ..      68     112 ..      54     141 .. 0.66
   2 !   20.5   0.0   1.9e-07   5.8e-05      91     143 ..     257     311 ..     246     319 .. 0.86

  Alignments for each domain:
  == domain 1    score: 2.8 bits;  conditional E-value: 0.052
   TIGR01668  38 epdsnevapalkewieelkaaGlkllivSNnageqrvkalekelgi 83 
                   d + + p +   +++l +  +++l++SN   ++r  a++k   +
  MMETSP1137-20121227|5924_1  68 LHDGQRALPGALHCFDQLVSSKKAVLVLSNAS-RRRSAAVSKLARL 112
                 456677788888888888888899******99.5555566654433 PP

  == domain 2    score: 20.5 bits;  conditional E-value: 1.9e-07
   TIGR01668  91 Kkpgkafrralkemg..ltseqvvvvGDrlfTDvllgnrnGsltilveplvhpde 143
                 K+   af + ++ +g  ++ + v+ vGD+l+ D+ ++nr G+ +++++ ++h+de
  MMETSP1137-20121227|5924_1 257 KPHSAAFDACMRVIGsdVPRSRVLHVGDSLVHDIAGANRAGVDSLFIAAGIHADE 311
                 6777777777877652267999*******************************98 PP

>> TIGR02253  CTE7: HAD hydrolase, TIGR02253 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.0   0.0   1.9e-08   6.1e-06     148     198 ..     255     307 ..     251     319 .. 0.86

  Alignments for each domain:
  == domain 1    score: 24.0 bits;  conditional E-value: 1.9e-08
   TIGR02253 148 veKPhpkiFkaalkrlg..vkpeeavmvGDrlekDikGaknlglktvwinrgk 198
                 + KPh   F a+++ +g  v     + vGD+l++Di Ga+++g+ ++ i  g 
  MMETSP1137-20121227|5924_1 255 FGKPHSAAFDACMRVIGsdVPRSRVLHVGDSLVHDIAGANRAGVDSLFIAAGI 307
                 67*************984466778899*****************999887665 PP

>> TIGR01456  CECR5: HAD hydrolase, TIGR01456 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.4   0.1   0.00014     0.045       2      68 ..      59     119 ..      58     125 .. 0.81
   2 !   10.7   0.0   0.00012     0.037     262     297 ..     275     310 ..     210     326 .. 0.85

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 0.00014
   TIGR01456   2 gfalDiDGvllrGkkpiagaskalrrLvddsgalkiPvllltngGglserkraeelsalLgvevspl 68 
                 +++lD  Gvl  G+++++ga++ + +Lv +    k  vl+l n+    +r+ a    a+Lg +vs+l
  MMETSP1137-20121227|5924_1  59 AIILDQFGVLHDGQRALPGALHCFDQLVSS----KKAVLVLSNASR--RRSAAVSKLARLGFDVSAL 119
                 689999************************....888999999964..2333333335789999987 PP

  == domain 2    score: 10.7 bits;  conditional E-value: 0.00012
   TIGR01456 262 pfkklymvGDnPksDiiGarqaglfsilvktgvydg 297
                 p  ++  vGD    Di Ga++ag  s ++  g++ +
  MMETSP1137-20121227|5924_1 275 PRSRVLHVGDSLVHDIAGANRAGVDSLFIAAGIHAD 310
                 5567889**************************964 PP

>> TIGR02252  DREG-2: HAD hydrolase, REG-2-like, family IA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.0   0.0      0.44   1.4e+02     107     138 ..      75     106 ..      52     131 .. 0.77
   2 !   21.1   0.0   1.4e-07   4.5e-05     159     202 ..     256     301 ..     251     302 .. 0.93

  Alignments for each domain:
  == domain 1    score: -0.0 bits;  conditional E-value: 0.44
   TIGR02252 107 vedlekllkklreeglklgvvSNfDsrlrklL 138
                 ++++ +++++l + ++++ v+SN+ +r  + +
  MMETSP1137-20121227|5924_1  75 LPGALHCFDQLVSSKKAVLVLSNASRRRSAAV 106
                 6788899999999999*******999866544 PP

  == domain 2    score: 21.1 bits;  conditional E-value: 1.4e-07
   TIGR02252 159 eKPdpkIFekaleklg..ikpeevlhiGDslekDvegakaaGlral 202
                  KP  + F+  ++ +g  +  + vlh+GDsl +D+ ga  aG+++l
  MMETSP1137-20121227|5924_1 256 GKPHSAAFDACMRVIGsdVPRSRVLHVGDSLVHDIAGANRAGVDSL 301
                 69***********99999999**********************997 PP

>> TIGR01428  HAD_type_II: haloacid dehalogenase, type II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.0     0.062        20      94     134 ..      76     114 ..      48     121 .. 0.85
   2 !   14.5   0.0   1.8e-05    0.0056     147     191 ..     257     304 ..     250     309 .. 0.87

  Alignments for each domain:
  == domain 1    score: 3.0 bits;  conditional E-value: 0.062
   TIGR01428  94 pdvaagLkkLkerglklviLsNgstatlkslvkkagldlef 134
                 p ++++ ++L + +  +++LsN+s     ++ k a   l f
  MMETSP1137-20121227|5924_1  76 PGALHCFDQLVSSKKAVLVLSNASRRRSAAVSKLAR--LGF 114
                 67788899999999999*******999988888776..444 PP

  == domain 2    score: 14.5 bits;  conditional E-value: 1.8e-05
   TIGR01428 147 KPapkvYelalealg..vkpeevllvasna.wDlkgAkklGlktvwvn 191
                 KP+ ++++  ++ +g  v++++vl+v  +   D++gA+++G+ + +++
  MMETSP1137-20121227|5924_1 257 KPHSAAFDACMRVIGsdVPRSRVLHVGDSLvHDIAGANRAGVDSLFIA 304
                 9***********9873366********99879999*********9997 PP

>> TIGR01662  HAD-SF-IIIA: HAD hydrolase, family IIIA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.0      0.11        34      26      60 ..      74     106 ..      57     124 .. 0.74
   2 !   10.8   0.0   0.00028     0.087      93     135 ..     257     300 ..     248     306 .. 0.80

  Alignments for each domain:
  == domain 1    score: 2.4 bits;  conditional E-value: 0.11
   TIGR01662  26 lypevidalaelkkeGykvvivtNqsgigrgkesv 60 
                   p++   + +l  +++ v +++N s   r+ ++v
  MMETSP1137-20121227|5924_1  74 ALPGALHCFDQLVSSKKAVLVLSNAS--RRRSAAV 106
                 4578888899999999**********..4444444 PP

  == domain 2    score: 10.8 bits;  conditional E-value: 0.00028
   TIGR01662  93 Kpktgmleealkrln.eidakesvvvGDavltDleaakrvGlat 135
                 Kp   +++  ++ +  ++  ++++ vGD +  D+ +a+r+G+  
  MMETSP1137-20121227|5924_1 257 KPHSAAFDACMRVIGsDVPRSRVLHVGDSLVHDIAGANRAGVDS 300
                 78666666666555477888999*****999**********976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (350 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       100  (0.0243784); expected 82.0 (0.02)
Passed bias filter:                       96  (0.0234032); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                        13  (0.00316919); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.33u 0.14s 00:00:00.47 Elapsed: 00:00:00.47
# Mc/sec: 982.90
//
Query:       MMETSP1137-20121227|5925_1  [L=173]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (173 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        64  (0.0156021); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.12s 00:00:00.30 Elapsed: 00:00:00.30
# Mc/sec: 761.14
//
Query:       MMETSP1137-20121227|5926_1  [L=403]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (403 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       135  (0.0329108); expected 82.0 (0.02)
Passed bias filter:                       97  (0.023647); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.16s 00:00:00.46 Elapsed: 00:00:00.32
# Mc/sec: 1662.24
//
Query:       MMETSP1137-20121227|5927_1  [L=233]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (233 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        97  (0.023647); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.14s 00:00:00.34 Elapsed: 00:00:00.51
# Mc/sec: 603.01
//
Query:       MMETSP1137-20121227|5930_1  [L=546]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (546 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        90  (0.0219405); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.16s 00:00:00.51 Elapsed: 00:00:00.54
# Mc/sec: 1334.56
//
Query:       MMETSP1137-20121227|5931_1  [L=277]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (277 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        71  (0.0173086); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.16s 00:00:00.38 Elapsed: 00:00:00.59
# Mc/sec: 619.68
//
Query:       MMETSP1137-20121227|5932_1  [L=357]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.9e-44  149.1   0.0    7.2e-44  148.2   0.0    1.3  1  TIGR00050 rRNA_methyl_1: RNA methyltransferase, TrmH family, group 1
    1.4e-06   25.8   0.0    3.1e-06   24.7   0.0    1.5  1  TIGR00186 rRNA_methyl_3: RNA methyltransferase, TrmH family, group 3
     0.0002   19.1   0.0     0.0053   14.5   0.0    2.1  2  TIGR00185 rRNA_methyl_2: RNA methyltransferase, TrmH family, group 2


Domain annotation for each model (and alignments):
>> TIGR00050  rRNA_methyl_1: RNA methyltransferase, TrmH family, group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  148.2   0.0   5.2e-47   7.2e-44       6     225 ..      88     330 ..      86     335 .. 0.88

  Alignments for each domain:
  == domain 1    score: 148.2 bits;  conditional E-value: 5.2e-47
   TIGR00050   6 sivlvepktsgNvGsiARamknmGleeLilvnpkv....leeeayalaagakdilenakvvddldealddldlvvgTsarsralkkvlltPreladkllakkg...kvalvFGREdsGLtNEElekcdvlvsiptseeYpslNlsqAvavilYelreaklvqeek........ledkeeatkedlelllekleelllslevip......eh..kkrsvvkilrrllqRaklekeevalLkgil 225
                 s++l  p  +gN+G++ARam+n+Gl eL+lv p +     +eea   a ga  +l+n + +d+l++a +d+ lv++T+ar r    ++ +Pre+a+++  + +   +va +FG E++GL+ EEl+ ++ +v++pt++ + slNl+qAv +i+Ye   a+  ++++        +++   at ++le+l++  e+ l ++ + +      e+  +   ++++lr ll Ra+  + ev lL+g l
  MMETSP1137-20121227|5932_1  88 SVILARPYDPGNIGAAARAMMNFGLCELRLVAPDCgdewCTEEALSRACGAVPVLDNTVKFDELSDACADVGLVLATTARPRDCALPVYNPREAAELAARTIStgsRVAFLFGSEKNGLSAEELRVAHAIVTVPTEKLFFSLNLAQAVLLIAYEWSAAQSSTRPQertgdkqrDSQEMAATGKQLEALFSFWEHALWQTRFFRtggnaeERsgRPAAAMAKLRALLMRAQPSSGEVGLLHGSL 330
                 79*******************************998777889****************************************************999876554567*************************************************999888777777887755444778999********9999988777654222111331134579*********************9976 PP

>> TIGR00186  rRNA_methyl_3: RNA methyltransferase, TrmH family, group 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.7   0.0   2.3e-09   3.1e-06      63     237 ..      60     243 ..      46     246 .. 0.76

  Alignments for each domain:
  == domain 1    score: 24.7 bits;  conditional E-value: 2.3e-09
   TIGR00186  63 nHqgivaevkpeikeleledlvktakskkapllliLdeitDphNlGailRtAealgvdg..vvlkkrrsapltstvvktssGalell.plvrvtnlsetltklkesgfwivgtsleaeet...kyekkktk...........klaLvvGnEgkGvrklikkksDflikipmagkvdSLNvSVAtgillfeik 237
                   q++  +v+p +k++ ++        ++    +iL    Dp N+Ga  R+ + +g     +v +       t+ ++  ++Ga+  l + v+ ++ls++  ++    +++++t++  ++     y+  + +           ++a + G+E++G+++   + +  ++++p+++ + SLN+  A+ ++ +e++
  MMETSP1137-20121227|5932_1  60 TVQRVHHRVAP-TKQAAFDAAF---LRREYLPSVILARPYDPGNIGAAARAMMNFGLCElrLVAPDCGDEWCTEEALSRACGAVPVLdNTVKFDELSDACADV----GLVLATTARPRDCalpVYNPREAAelaartistgsRVAFLFGSEKNGLSAEELRVAHAIVTVPTEKLFFSLNLAQAVLLIAYEWS 243
                 55666677777.6777776655...233322357888899****************9762257777777889999********98873466777777766554....56777777777774554444444477899999999******************************************99999997 PP

>> TIGR00185  rRNA_methyl_2: RNA methyltransferase, TrmH family, group 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.0     0.023        31       4      34 ..      89     120 ..      87     141 .. 0.84
   2 !   14.5   0.0   3.9e-06    0.0053      96     148 ..     195     246 ..     175     251 .. 0.84

  Alignments for each domain:
  == domain 1    score: 2.2 bits;  conditional E-value: 0.023
   TIGR00185   4 ivlyePeiPnntGnivrtCaatk.aelhlikP 34 
                 ++l +P  P n G  +r+  +++  el l+ P
  MMETSP1137-20121227|5932_1  89 VILARPYDPGNIGAAARAMMNFGlCELRLVAP 120
                 79999*****************9458999998 PP

  == domain 2    score: 14.5 bits;  conditional E-value: 3.9e-06
   TIGR00185  96 dylvfGqetkGlPkslldelaeqklriPlteevrslnlsnavavvlyealrql 148
                   ++fG+e +Gl ++ l    +  + +P  +   slnl++av ++ ye +  +
  MMETSP1137-20121227|5932_1 195 VAFLFGSEKNGLSAEELRVA-HAIVTVPTEKLFFSLNLAQAVLLIAYEWSAAQ 246
                 4699********99988665.899************************87554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (357 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        59  (0.0143832); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.28u 0.14s 00:00:00.42 Elapsed: 00:00:00.42
# Mc/sec: 1121.91
//
Query:       MMETSP1137-20121227|5935_1  [L=280]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (280 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        95  (0.0231594); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.14s 00:00:00.35 Elapsed: 00:00:00.35
# Mc/sec: 1055.91
//
Query:       MMETSP1137-20121227|5936_1  [L=304]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.4e-39  130.9   0.2    1.2e-38  130.5   0.2    1.0  1  TIGR02441 fa_ox_alpha_mit: fatty acid oxidation complex, alpha subunit, mitochondrial
    1.9e-35  120.1   0.4    2.5e-35  119.8   0.3    1.1  1  TIGR02440 FadJ: fatty oxidation complex, alpha subunit FadJ
    1.7e-14   51.0   0.0      2e-14   50.7   0.0    1.0  1  TIGR02437 FadB: fatty oxidation complex, alpha subunit FadB
    3.8e-10   36.9   0.1    4.9e-10   36.6   0.0    1.1  1  TIGR03222 benzo_boxC: benzoyl-CoA-dihydrodiol lyase
    3.1e-06   24.5   0.3    4.5e-06   24.0   0.2    1.3  1  TIGR03189 dienoyl_CoA_hyt: cyclohexa-1,5-dienecarbonyl-CoA hydratase
    5.2e-06   24.0   0.1    8.4e-06   23.3   0.0    1.3  1  TIGR02280 PaaB1: phenylacetate degradation probable enoyl-CoA hydratase PaaB
  ------ inclusion threshold ------
      0.019   12.3   0.0      0.032   11.6   0.0    1.3  1  TIGR01929 menB: naphthoate synthase


Domain annotation for each model (and alignments):
>> TIGR02441  fa_ox_alpha_mit: fatty acid oxidation complex, alpha subunit, mitochondrial
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  130.5   0.2   2.1e-41   1.2e-38      17     148 ..      20     154 ..       5     164 .. 0.89

  Alignments for each domain:
  == domain 1    score: 130.5 bits;  conditional E-value: 2.1e-41
   TIGR02441  17 vevkgdvavvkidspnskvntlskelsaefkevldeletneavksavlisskpgsfvaGadidmlkackta..eevtqlsreaqkllekle..kskkpivaaisGsclGGGlelalachyriatkdkktllglpev 148
                 v+ ++++a+v++d p  k+n+ls e++ ef++v +++  ++++k+avlis+kpgsf+aGa+i+m++  +++  e+v ++  ++q+ ++ le  + kkp vaai G clGGGle+al+c +r+a   +kt+lglpev
  MMETSP1137-20121227|5936_1  20 VN-EQGIALVRLDCPGEKQNSLSDEMMGEFETVAEQVANDPKIKAAVLISGKPGSFIAGANIKMIEKLGASsyEAVHEVGLKGQQCMDELEamQQKKPWVAAIDGPCLGGGLEMALCCAHRVASTSSKTVLGLPEV 154
                 32.4579**********************************************************987654227999*************955678***************************************9 PP

>> TIGR02440  FadJ: fatty oxidation complex, alpha subunit FadJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  119.8   0.3   4.2e-38   2.5e-35       3     137 ..      17     155 ..      15     174 .. 0.92

  Alignments for each domain:
  == domain 1    score: 119.8 bits;  conditional E-value: 4.2e-38
   TIGR02440   3 tltvredniailtidvpgeklntlkaefadqvaeilkqlkekkelrglvlvsgkpdsfiagadismlaackta..deakalaqkgqellaelealpi..kvvaaihgaclggglelalachsrvcsdddktvlglpevq 137
                 +++v+e++ia++++d pgek n+l  e+  + +++ +q+ ++++++  vl+sgkp sfiaga+i+m++   ++  +  + +  kgq+ + elea++   + vaai g+clgggle+al c +rv s  +ktvlglpev+
  MMETSP1137-20121227|5936_1  17 SVSVNEQGIALVRLDCPGEKQNSLSDEMMGEFETVAEQVANDPKIKAAVLISGKPGSFIAGANIKMIEKLGASsyEAVHEVGLKGQQCMDELEAMQQkkPWVAAIDGPCLGGGLEMALCCAHRVASTSSKTVLGLPEVK 155
                 67899**************************************************************9865431145578999************862268************************************97 PP

>> TIGR02437  FadB: fatty oxidation complex, alpha subunit FadB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.7   0.0   3.5e-17     2e-14       5     142 ..      13     156 ..      10     189 .. 0.89

  Alignments for each domain:
  == domain 1    score: 50.7 bits;  conditional E-value: 3.5e-17
   TIGR02437   5 aetlqvelledgiaelvfdapg.svnkldratlasldkaldalkaqsdlkgllltsdk.dafivGaditeflelfakpeeellqwleeansvfnkledlp..vptvaavkGfalGGGlevvlatdfriadktak..iGlpetkl 142
                 a++l v++ e+gia + +d pg   n l  + + +++   + + ++ ++k+ +l s+k  +fi Ga+i  + +l a   e +++   + ++ +++le ++   p vaa++G +lGGGle+ l + +r+a+++ k  +Glpe+k 
  MMETSP1137-20121227|5936_1  13 ASSLSVSVNEQGIALVRLDCPGeKQNSLSDEMMGEFETVAEQVANDPKIKAAVLISGKpGSFIAGANIKMIEKLGASSYEAVHEVGLKGQQCMDELEAMQqkKPWVAAIDGPCLGGGLEMALCCAHRVASTSSKtvLGLPEVKA 156
                 57899999**************889***************************999999458*******9999999999999999999**********9862269*************************98766448*****96 PP

>> TIGR03222  benzo_boxC: benzoyl-CoA-dihydrodiol lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.6   0.0   8.3e-13   4.9e-10      63     160 ..      57     155 ..      16     160 .. 0.81

  Alignments for each domain:
  == domain 1    score: 36.6 bits;  conditional E-value: 8.3e-13
   TIGR03222  63 ehpevrvvvltsakdkvfcaGanikmlglsthahkvnfckftnetrngiedase.esglkflaavnGtaaGGGyelalacdeivlvddrssavslpevp 160
                 + p++++ vl s+k+  f aGanikm+ +   +          + ++++++ +  + ++ ++aa++G + GGG e+al c + v    +++ + lpev 
  MMETSP1137-20121227|5936_1  57 NDPKIKAAVLISGKPGSFIAGANIKMIEKLGASSYEAVHEVGLKGQQCMDELEAmQQKKPWVAAIDGPCLGGGLEMALCCAHRVASTSSKTVLGLPEVK 155
                 579***********************75543333333334444444444443330445679************************************95 PP

>> TIGR03189  dienoyl_CoA_hyt: cyclohexa-1,5-dienecarbonyl-CoA hydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.0   0.2   7.6e-09   4.5e-06       7     128 ..      23     155 ..      16     183 .. 0.72

  Alignments for each domain:
  == domain 1    score: 24.0 bits;  conditional E-value: 7.6e-09
   TIGR03189   7 rdgkllrlrlarpkanivdaamiaalraalgealeaaalra.vlldaegphfsfgasveehmpdq.caamlkslhklv.........iemldspvpilvavrgqclggglevaaag..nllfaapdaklgqpeik 128
                 +  +l+rl     k n +  +m+  +++   +  ++++++a vl+  +   f  ga  + +m ++  a+  +++h++           e ++   p + a+ g clgggle+a++   ++  ++ ++ lg pe+k
  MMETSP1137-20121227|5936_1  23 QGIALVRLDCPGEKQNSLSDEMMGEFETVAEQVANDPKIKAaVLISGKPGSFIAGA--NIKMIEKlGASSYEAVHEVGlkgqqcmdeLEAMQQKKPWVAAIDGPCLGGGLEMALCCahRVASTSSKTVLGLPEVK 155
                 4447999999999****************999*******97255554444555555..5556655246677788876411111111123456788*****************98651155566677889****98 PP

>> TIGR02280  PaaB1: phenylacetate degradation probable enoyl-CoA hydratase PaaB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.3   0.0   1.4e-08   8.4e-06       6     129 ..      22     150 ..      18     187 .. 0.80

  Alignments for each domain:
  == domain 1    score: 23.3 bits;  conditional E-value: 1.4e-08
   TIGR02280   6 ekgvlrltlnrp.dklnsfteemhaelaealerverdd.vra.llltGaGrGfcaGqdlsernvtkg....aapdlGetvekfynplvrrlaalpkpvvvavnGvaaGaGanlalagdivlaaesakfiqa 129
                 e+g++ + l+ p +k ns+++em  e+    e+v +d  ++a +l++G    f aG +++  +        a+ ++G   ++  + l     + +kp v+a++G   G G ++al++   +a+ s+k +  
  MMETSP1137-20121227|5936_1  22 EQGIALVRLDCPgEKQNSLSDEMMGEFETVAEQVANDPkIKAaVLISGKPGSFIAGANIKMIEKLGAssyeAVHEVGLKGQQCMDELEA--MQQKKPWVAAIDGPCLGGGLEMALCCAHRVASTSSKTVLG 150
                 6788999999986799*******************99887751667888899*****99876654440122555666666666655533..34479**************************999988765 PP

>> TIGR01929  menB: naphthoate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   5.5e-05     0.032      10     128 ..      22     145 ..      16     159 .. 0.74

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 5.5e-05
   TIGR01929  10 edaiakiaidrp.kvrnafrpktvdellealddaredsdiGvviltGaGdkafcsGGdqkvrgksGykdesGesrlnv.....levqrlirtlpkpvialvnGyaiGGGhvlhvvcdltiasena 128
                 e++ia + +d p + +n++  + + e+ ++ ++  +d++i   +l      +f +G + k+  k G    + ++++ +     ++   ++    kp +a ++G ++GGG  + + c   +as  +
  MMETSP1137-20121227|5936_1  22 EQGIALVRLDCPgEKQNSLSDEMMGEFETVAEQVANDPKIKAAVLISGKPGSFIAGANIKMIEKLGASSYEAVHEVGLkgqqcMDELEAM-QQKKPWVAAIDGPCLGGGLEMALCCAHRVASTSS 145
                 567888888888557899999999999999**********876665555668********999998665555544433000003333332.3479***********************9999554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (304 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       103  (0.0251097); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.30u 0.17s 00:00:00.47 Elapsed: 00:00:00.57
# Mc/sec: 691.80
//
Query:       MMETSP1137-20121227|5937_1  [L=352]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (352 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        51  (0.012433); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.15s 00:00:00.39 Elapsed: 00:00:00.38
# Mc/sec: 1222.64
//
Query:       MMETSP1137-20121227|5938_1  [L=117]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (117 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        89  (0.0216967); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.15s 00:00:00.31 Elapsed: 00:00:00.28
# Mc/sec: 551.53
//
Query:       MMETSP1137-20121227|5939_1  [L=346]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.6e-22   77.5   0.2    3.5e-22   77.1   0.1    1.2  1  TIGR02349 DnaJ_bact: chaperone protein DnaJ
    6.1e-14   49.2   0.6    9.3e-14   48.6   0.4    1.2  1  TIGR03835 termin_org_DnaJ: terminal organelle assembly protein TopJ
    7.9e-05   20.7   0.3    0.00015   19.7   0.2    1.4  1  TIGR00714 hscB: Fe-S protein assembly co-chaperone HscB


Domain annotation for each model (and alignments):
>> TIGR02349  DnaJ_bact: chaperone protein DnaJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.1   0.1   2.6e-25   3.5e-22       1      83 [.       4      91 ..       4     135 .. 0.73

  Alignments for each domain:
  == domain 1    score: 77.1 bits;  conditional E-value: 2.6e-25
   TIGR02349  1 dYYeiLgvskdAseeeikkAYrklakkyHPDrnkg.....ekeaeekfkeineAyevLsdeekraqYDqfghagleggaggggagfeg 83
                d Y++Lgv   As  e++kAYrkla+kyHPD++++     + +ae +fk+i++AyevLs +e r++YD+  + + +++++  g+g ++
  MMETSP1137-20121227|5939_1  4 DLYQTLGVGAAASPVELRKAYRKLAMKYHPDKHREssealRSAAERQFKDITQAYEVLSRPETRRAYDEANQPEQKSASAPRGHGESD 91
                78*******************************99666666789*************************7766666554433332222 PP

>> TIGR03835  termin_org_DnaJ: terminal organelle assembly protein TopJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.6   0.4   6.8e-17   9.3e-14       1      65 [.       2      72 ..       2      74 .. 0.88

  Alignments for each domain:
  == domain 1    score: 48.6 bits;  conditional E-value: 6.8e-17
   TIGR03835  1 krDyyevLgidrDadeqeikkafrkLakkyhPDrnka.ad.....aakifaeineandvLsnPkkraryDk 65
                k D y  Lg+   a   e++ka+rkLa kyhPD+ ++ ++     a++ f++i  a++vLs P+ r  yD 
  MMETSP1137-20121227|5939_1  2 KEDLYQTLGVGAAASPVELRKAYRKLAMKYHPDKHREsSEalrsaAERQFKDITQAYEVLSRPETRRAYDE 72
                789******************************9886433223337999********************95 PP

>> TIGR00714  hscB: Fe-S protein assembly co-chaperone HscB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.2   1.1e-07   0.00015       8      54 ..      20      68 ..      17      71 .. 0.83

  Alignments for each domain:
  == domain 1    score: 19.7 bits;  conditional E-value: 1.1e-07
   TIGR00714  8 LrkryrklQkqyHPD...vsksaqeqaaalqqStelNqAykTLkdplkRa 54
                Lrk yrkl  +yHPD    s++a+   aa +q  ++ qAy+ L  p  R 
  MMETSP1137-20121227|5939_1 20 LRKAYRKLAMKYHPDkhrESSEALR-SAAERQFKDITQAYEVLSRPETRR 68
                99*************8855555554.889999***********9987665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (346 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        95  (0.0231594); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.28u 0.12s 00:00:00.40 Elapsed: 00:00:00.40
# Mc/sec: 1141.71
//
Query:       MMETSP1137-20121227|5940_1  [L=350]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      3e-13   47.7   0.1    4.8e-13   47.0   0.0    1.3  1  TIGR02349 DnaJ_bact: chaperone protein DnaJ
    1.6e-09   34.5   0.1    1.6e-09   34.5   0.0    1.8  2  TIGR03835 termin_org_DnaJ: terminal organelle assembly protein TopJ


Domain annotation for each model (and alignments):
>> TIGR02349  DnaJ_bact: chaperone protein DnaJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.0   0.0   2.3e-16   4.8e-13       3      65 ..      41      99 ..      39     125 .. 0.93

  Alignments for each domain:
  == domain 1    score: 47.0 bits;  conditional E-value: 2.3e-16
   TIGR02349  3 YeiLgvskdAseeeikkAYrklakkyHPDrnkgekeaeekfkeineAyevLsdeekraqYDqf 65
                Ye+Lgv+ ++s   ik++Yr+la ++HPD+n+ ++   + f e+ +  evLs++e r++YD +
  MMETSP1137-20121227|5940_1 41 YELLGVKPTSSPIVIKRSYRRLATEWHPDKNP-HP---KAFPEVRKRDEVLSNSEMRKNYDYL 99
                ********************************.55...56*********************75 PP

>> TIGR03835  termin_org_DnaJ: terminal organelle assembly protein TopJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.5   0.0   7.8e-13   1.6e-09       4      64 ..      40      97 ..      37     100 .. 0.96
   2 ?   -2.0   0.5     0.084   1.7e+02     302     365 ..     169     217 ..     142     235 .. 0.52

  Alignments for each domain:
  == domain 1    score: 34.5 bits;  conditional E-value: 7.8e-13
   TIGR03835  4 yyevLgidrDadeqeikkafrkLakkyhPDrnkaadaakifaeineandvLsnPkkraryD 64
                 ye Lg+++ +    ik+++r+La  +hPD+n  + a   f e+    +vLsn + r++yD
  MMETSP1137-20121227|5940_1 40 CYELLGVKPTSSPIVIKRSYRRLATEWHPDKNPHPKA---FPEVRKRDEVLSNSEMRKNYD 97
                5*********************************987...********************9 PP

  == domain 2    score: -2.0 bits;  conditional E-value: 0.084
   TIGR03835 302 tkpveavestveenlPeinettqaveptsevistvsveatdqlkpkevdqiqeelkktkeieve 365
                 +               ei  + ++ ++ ++ +s   +eat+ +  ++  + +e+ + +k++e +
  MMETSP1137-20121227|5940_1 169 A---------------EIASANSSTKTVAKPRSGSGKEATSSKAKTNSKKKSENDEAAKAAEAK 217
                 3...............343333333333444444444444444444444444444444444433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (350 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       202  (0.0492443); expected 82.0 (0.02)
Passed bias filter:                      125  (0.0304729); expected 82.0 (0.02)
Passed Vit filter:                        19  (0.00463189); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.29u 0.13s 00:00:00.42 Elapsed: 00:00:00.76
# Mc/sec: 607.84
//
Query:       MMETSP1137-20121227|5941_1  [L=446]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (446 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       370  (0.0901999); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                        26  (0.00633837); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.17s 00:00:00.60 Elapsed: 00:00:00.51
# Mc/sec: 1154.26
//
Query:       MMETSP1137-20121227|5942_1  [L=526]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   1.4e-246  816.9  14.2   1.6e-246  816.7   9.8    1.0  1  TIGR02341 chap_CCT_beta: T-complex protein 1, beta subunit
     5e-124  412.7  15.9   5.7e-124  412.5  11.0    1.0  1  TIGR02339 thermosome_arch: thermosome, various subunits, archaeal
   9.8e-114  378.8  12.8   1.1e-113  378.6   8.9    1.0  1  TIGR02340 chap_CCT_alpha: T-complex protein 1, alpha subunit
   5.8e-110  365.9   8.2   7.5e-110  365.5   5.7    1.0  1  TIGR02345 chap_CCT_eta: T-complex protein 1, eta subunit
   9.7e-108  358.7  13.6   1.2e-107  358.5   9.4    1.0  1  TIGR02342 chap_CCT_delta: T-complex protein 1, delta subunit
   3.4e-105  350.5  12.5   4.2e-105  350.2   8.7    1.0  1  TIGR02343 chap_CCT_epsi: T-complex protein 1, epsilon subunit
    7.4e-85  283.2   9.6    9.3e-85  282.9   6.7    1.0  1  TIGR02344 chap_CCT_gamma: T-complex protein 1, gamma subunit
    3.9e-76  254.4   6.9    4.9e-76  254.1   4.8    1.0  1  TIGR02346 chap_CCT_theta: T-complex protein 1, theta subunit
    4.4e-73  244.4   8.6    5.5e-73  244.1   6.0    1.1  1  TIGR02347 chap_CCT_zeta: T-complex protein 1, zeta subunit
    2.3e-23   80.3   7.5    7.7e-13   45.6   1.5    2.2  2  TIGR02348 GroEL: chaperonin GroL


Domain annotation for each model (and alignments):
>> TIGR02341  chap_CCT_beta: T-complex protein 1, beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  816.7   9.8  3.9e-249  1.6e-246       1     519 []       5     524 ..       5     524 .. 1.00

  Alignments for each domain:
  == domain 1    score: 816.7 bits;  conditional E-value: 3.9e-249
   TIGR02341   1 qilkdsaeeeraenarlssfvgaiavgdlvkstlgpkgmdkillsasseasivvtndgatilksialdnpaakvlvdiskvqddevgdgttsvtvlaaellreaeklvnkkihpqtiiegyrlatkaalealkksavdnssdkvkfredllkiarttlsskilsqdkdhfaklavdavlrlkgstnleaiqiikklggklddsyld.egfllekkigvnqpkrienakiliantaldtdkvkvfgsrvrvdstaklaelekaekekmkekvekilkhninvfinrqliynypeqlfadagvmaiehadfegverlalvtggeivstfdepelvklgscdlieeiligedkllkfsgvklgeactivlrgatqqildeaerslhdalavlsqtvkesrtvlgggcaellmakaveeeaqkvagkkalaveafakalrqlptiladnagfdsaelvaklraahaegnstagldleegeiadlrklgivesyklkravvssaaeaaevllrvdniikaaprar 519
                 +i++++a+e ++e ar+ss++ga+av dlvk++lgpkgmdkil+s ++ + + vtndgatilks+ +dnpaakvl+diskvqddevgdgttsv+vla ellr+  +l++kk+hpqt+++g+rla +aal+al++savd+s d + fredl++ia+ttlssk+ls dk+hfa++av avl+l+gstnl++iqiik++gg l dsyld +gfll+k+igv +pk +++ kiliant++dtdkvk++gs+v+vds++k+ae+e+aek+km +kv++i +h++ vfinrqliyn peq +adag+m+iehadf+g+erl lv+ g+ivstfd p++vklg+cd+iee++igedkl++f g+   +a +ivlrga   ++dea rslhdal+vlsqtvk++ +  ggg+ e+lma+aveeea+ va k+ la+ea+a+alr++p  +adnag+dsael a l+a+h eg+++ gl++e+g +ad+r+lgi+e++k+k++v++sa+eaae++lrvd+i++ apr+r
  MMETSP1137-20121227|5942_1   5 NIFDAEAQESKGEHARMSSIMGALAVSDLVKTSLGPKGMDKILQSVGRGNMVSVTNDGATILKSVLIDNPAAKVLIDISKVQDDEVGDGTTSVCVLAGELLRQGAELIEKKMHPQTVVAGFRLARDAALKALNASAVDHSADAAAFREDLINIAKTTLSSKVLSADKEHFAEIAVSAVLKLRGSTNLDQIQIIKRIGGGLRDSYLDlDGFLLDKRIGVGCPKTMKDCKILIANTPMDTDKVKIYGSKVKVDSVSKVAEIEAAEKQKMLDKVDRIIAHGCSVFINRQLIYNLPEQRLADAGIMSIEHADFDGIERLGLVLDGDIVSTFDTPDKVKLGQCDKIEEVMIGEDKLVRFIGCPNSQASSIVLRGANTHVVDEAHRSLHDALCVLSQTVKNTAVLPGGGAPEMLMAQAVEEEAKLVASKHVLAMEAYARALRMMPMHIADNAGYDSAELCAGLKAKHFEGHHSWGLEMEKGGLADMRELGIMEALKVKQQVLLSASEAAEMILRVDDIVQCAPRKR 524
                 69************************************************************************************************************************************************************************************************************88**********************************************************************************************************************************************************************************************************************************************************************************************************************97 PP

>> TIGR02339  thermosome_arch: thermosome, various subunits, archaeal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  412.5  11.0  1.4e-126  5.7e-124       1     519 [.       3     518 ..       3     520 .. 0.96

  Alignments for each domain:
  == domain 1    score: 412.5 bits;  conditional E-value: 1.4e-126
   TIGR02339   1 pvlilkegtqrtkgrdalksniaaakavaeavkstlGPrGlDkmLvd.slGd.vtitnDGatilkemdiehPaakllvevaktqdeevgDGtttavvlaGeLlekaedLleqdihPtviveGyrkaaekalevideiaekidve...dkellkkvaetsltskavaeeakdklaelvveavkqvvekredgkykvdldnikiekkkGgsiedtel.veGivvDkevvhegmPkrvenakialldaplevektei.daklkitspdqlkkfldqeeallkemvdkiadaGanvvicqkgiDdlaqhylakkGilavrrvkksDieklaratGakivsslkeieesdLGeaelveerkvgedklvfvegaknakavtillrGgtehvvdeleRaleDalkvvksvledgkvvaGgGavevelakrlreyaakieGreqlaveafadaleeiprilaenaGldpidalvelRakhekegnknagvdvftgeiedmlelgvieplkvkeqaiksateaatlilriDdvia 519
                 pv i++ ++q +kg+ a+ s i+ a av++ vk++lGP+G+Dk+L   + G+ v +tnDGatilk + i++Paak+l++++k qd+evgDGtt++ vlaGeLl+++ +L+e+++hP  +v G+r+a + al++++  a + +++    +e l ++a+t+l+sk+  +  k++ ae++v+av +    r  g  + +ld+i+i k+ Gg ++d+ l ++G ++Dk ++  g Pk +++ ki++ ++p++++k +i   k+k++s++++ +   +e++++ ++vd+i++ G  v+i ++ i +l ++ la++Gi+++ ++  + ie+l  +  + ivs+++  ++ +LG+ + +ee  +gedklv   g+ n++a +i+lrG + hvvde+ R+l+Dal v+ +++++ +v++GgGa e+ +a+ + e+a+ +  ++ la+ea+a al  +p+ +a+naG+d+ ++   l+akh  eg+ + g+++ +g ++dm elg++e+lkvk+q++ sa+eaa +ilr+Dd++ 
  MMETSP1137-20121227|5942_1   3 PVNIFDAEAQESKGEHARMSSIMGALAVSDLVKTSLGPKGMDKILQSvGRGNmVSVTNDGATILKSVLIDNPAAKVLIDISKVQDDEVGDGTTSVCVLAGELLRQGAELIEKKMHPQTVVAGFRLARDAALKALNASAVDHSADaaaFREDLINIAKTTLSSKVL-SADKEHFAEIAVSAVLK---LR--G--STNLDQIQIIKRIGGGLRDSYLdLDGFLLDK-RIGVGCPKTMKDCKILIANTPMDTDKVKIyGSKVKVDSVSKVAEIEAAEKQKMLDKVDRIIAHGCSVFINRQLIYNLPEQRLADAGIMSIEHADFDGIERLGLVLDGDIVSTFDTPDKVKLGQCDKIEEVMIGEDKLVRFIGCPNSQASSIVLRGANTHVVDEAHRSLHDALCVLSQTVKNTAVLPGGGAPEMLMAQAVEEEAKLVASKHVLAMEAYARALRMMPMHIADNAGYDSAELCAGLKAKHF-EGHHSWGLEMEKGGLADMRELGIMEALKVKQQVLLSASEAAEMILRVDDIVQ 518
                 788999*************************************994323344388********************************************************************************999999888444478999************.69************944...44..3..45899****************989******9.5899**********************9983589*********************************************************************************************************99************************************************************************************************************.59************************************************96 PP

>> TIGR02340  chap_CCT_alpha: T-complex protein 1, alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  378.6   8.9  2.8e-116  1.1e-113       6     534 ..      12     524 ..       7     526 .] 0.94

  Alignments for each domain:
  == domain 1    score: 378.6 bits;  conditional E-value: 2.8e-116
   TIGR02340   6 erksGedvrkqnvlavvavanivktslGPvGldkmlvddvGd...vtitndGatilkklevehPaakvlvelaqlqdkevGdGttsvvilaaellkradelvkrkvhPtsvisGyrlalkeavkyikekla.vsveelg.kealinvaktslsskiislesdlfsnlvvdavlavkvtnekgetkyPikavnilkahGksaresll.vkGyalnctvasqqmpkrvkkakialldfnlqkaklkl.gvqivvedpeklekirkreadivkerikkilkaGanvvlttkGiddlalkylveagvmavrrvkkedlkriakatGatlvssladleGeetleasllGeaeevveeriaddelilikgtkkkksasiilrGandvlldemerslhdalcvvkrtleskkvvaGgGaveaalsiyleelattlgsreqlaiaefaealliiPkvlavnaakdstelvaklralhaaaqlkeekkklkflGldlsngkirdnveaGvlePavskvkslkfateaaitilriddliklkpeee 534
                 ++++Ge++r   ++ + av+++vktslGP G+dk+l  +vG    v++tndGatilk + +++Paakvl+++++ qd evGdGttsv +la ell++++el+++k+hP +v+ G+rla   a+k ++ + +  s+++ + +e lin+akt+lssk++s++ ++f++++v avl ++ ++        +++++i+k  G+  r+s+l ++G+ l+  ++    pk +k+ ki++ +  +   k+k+ g ++ v+  +k+ +i   e + + +++++i++ G  v +  + i +l  + l +ag+m++   + + + r+  +  +++vs++ +       +  +lG++++++e+ i++d+l+ + g  +++++si+lrGan++++de +rslhdalcv+++t+   +v++GgGa e+ ++  +ee a+ + s+  la+ ++a+al ++P  +a na+ ds+el a l+a h +         ++++Gl++++g ++d  e+G++e    k ++l +a eaa  ilr+dd+++  p ++
  MMETSP1137-20121227|5942_1  12 QESKGEHARMSSIMGALAVSDLVKTSLGPKGMDKIL-QSVGRgnmVSVTNDGATILKSVLIDNPAAKVLIDISKVQDDEVGDGTTSVCVLAGELLRQGAELIEKKMHPQTVVAGFRLARDAALKALNASAVdHSADAAAfREDLINIAKTTLSSKVLSADKEHFAEIAVSAVLKLRGST-------NLDQIQIIKRIGGGLRDSYLdLDGFLLDKRIG-VGCPKTMKDCKILIANTPMDTDKVKIyGSKVKVDSVSKVAEIEAAEKQKMLDKVDRIIAHGCSVFINRQLIYNLPEQRLADAGIMSIEHADFDGIERLGLVLDGDIVSTFDT------PDKVKLGQCDKIEEVMIGEDKLVRFIGCPNSQASSIVLRGANTHVVDEAHRSLHDALCVLSQTVKNTAVLPGGGAPEMLMAQAVEEEAKLVASKHVLAMEAYARALRMMPMHIADNAGYDSAELCAGLKAKHFEG--------HHSWGLEMEKGGLADMRELGIMEALKVKQQVLLSASEAAEMILRVDDIVQCAPRKR 524
                 6789******************************97.566633349*******************************************************************************9987551555554349*******************************9998776.......4789***************9779**9998776.689**************9999999976999*******************************************************************************955......56789*****************************************************************************************************************************99754........5679*********************************************9998775 PP

>> TIGR02345  chap_CCT_eta: T-complex protein 1, eta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  365.5   5.7  1.8e-112  7.5e-110      11     519 ..      11     518 ..       3     522 .. 0.96

  Alignments for each domain:
  == domain 1    score: 365.5 bits;  conditional E-value: 1.8e-112
   TIGR02345  11 tdtsqGkgqlisninacvaiaeilkttlGPrGmdklivskek...avvsndGatilklldivhPaakllvdiaksqdsevGdGttsvvvlagellkeakplieeglhpqliiralrealklaieklkeiaveldeeksekrevleklaatalsskliaeekeffskmvvdavlsldkddldkkliGvkkvkGGaledsvl.vkGvafkktfsyaGfeqqPkkfanPkilllnvelel.kaekdnaeirvedvedykeivdaewkiileklekivesGanvvlsklsiGdlatqyfadrdifcaGrvsdedlkrvvkatGasilsavsdleadvlGkcalfeekqiGserynlftggekakactlilrGgaeqfleeaerslhdaimivrralkakkivaGGGaielelskllrekskkidgkqqliieavakaleviPrslaenaGfdsieilnklrkkhakkgekwaGvdieteeildaleafvwePllvkknalkaateaaatilsvdetik 519
                 + +s+G    +s i  + a+++++kt lGP+Gmdk+++s  +     v+ndGatilk + i  Paak+l+di+k qd+evGdGttsv+vlagell++  +lie+ +hpq ++ ++r a+ +a++ l+  av+ + + +  re l ++a+t+lssk+++  ke+f+++ v avl+l    ++ ++i + k  GG l+ds l ++G  ++k          Pk +++ kil+ n  ++  k    ++ ++v++v +  ei  ae + +l+k+++i++ G  v + ++ i +l  q +ad  i++    + + ++r+     + i+s+ ++ ++ +lG+c   ee  iG+++   f g+++++a+ ++lrG+  ++++ea rslhda++++ +++k++ +++GGGa e+ +++ ++e++k ++ k+ l +ea+a+al ++P ++a+naG+ds e+ + l++kh + g+   G+++e+  ++d+ e  + e l vk+ +l +a+eaa +il vd+ ++
  MMETSP1137-20121227|5942_1  11 AQESKGEHARMSSIMGALAVSDLVKTSLGPKGMDKILQSVGRgnmVSVTNDGATILKSVLIDNPAAKVLIDISKVQDDEVGDGTTSVCVLAGELLRQGAELIEKKMHPQTVVAGFRLARDAALKALNASAVDHSADAAAFREDLINIAKTTLSSKVLSADKEHFAEIAVSAVLKLR-GSTNLDQIQIIKRIGGGLRDSYLdLDGFLLDKRIGVG----CPKTMKDCKILIANTPMDTdKVKIYGSKVKVDSVSKVAEIEAAEKQKMLDKVDRIIAHGCSVFINRQLIYNLPEQRLADAGIMSIEHADFDGIERLGLVLDGDIVSTFDTPDKVKLGQCDKIEEVMIGEDKLVRFIGCPNSQASSIVLRGANTHVVDEAHRSLHDALCVLSQTVKNTAVLPGGGAPEMLMAQAVEEEAKLVASKHVLAMEAYARALRMMPMHIADNAGYDSAELCAGLKAKHFE-GHHSWGLEMEKGGLADMRELGIMEALKVKQQVLLSASEAAEMILRVDDIVQ 518
                 5679999999**************************9876544457899*************************************************************************************999**************************************9.67777788888888999***98869*******98754....6****************9834556899************************************************************************************************************************************************************************************************************************9.88888*******************************************997 PP

>> TIGR02342  chap_CCT_delta: T-complex protein 1, delta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  358.5   9.4  2.8e-110  1.2e-107       4     515 ..      13     518 ..      10     520 .. 0.95

  Alignments for each domain:
  == domain 1    score: 358.5 bits;  conditional E-value: 2.8e-110
   TIGR02342   4 kekpedvrtsnivaakavadairtslGpkGmdkliqe.kkGevi.itndGatilkqlevlhpaakllvelskaqdieaGdGttsvvvlaGalldaaekllekgihptiisesfqsaadealkilkelsipvdls...drealiksattslsskvvsqyssllaplavdavlkvidsekdknvdlkdikvvkklGgtiddtel.ieGvvltqkasksaggptriekakigliqfqlsapktdm.enqvvvsdyaqmdrvlkeerkyilnlvkkikkaganvlliqksilrdavndlalhflakkkilvvkdiereevefisktlGckpvasidkltadklGkaelveevksddskivkitGvknagktvsvlvrGsnklvideaerslhdalcvirslvkkraliaGGGapeieialklskkarelkGvesyivrafadalevipytlaenaGlnpikvvtelrnrhaqGektaGisvrkggitdileeevlqpllvtksavtlasetvrsilkiddivl 515
                 + k e+ r+s+i+ a av+d ++tslGpkGmdk++q+ ++G+++ +tndGatilk + +  paak+l+++sk qd e GdGttsv+vlaG ll    +l+ek++hp+++  +f+ a d alk l+  +   + +    re li+ a+t+lsskv+s   + +a +av avlk+  s      +l +i+++k++Gg + d+ l ++G +l++++    g p+ +++ ki + +  + + k ++  ++v v+  +++  +   e++ +l+ v++i + g+ v+     i r  + +l    la  +i+ +   + + +e +  +l    v+  d+  + klG+ + +eev  ++ k+v+ +G+ n+ ++ s+++rG+n  v+dea+rslhdalcv+   vk+ a+++GGGape+ +a+++ ++a+ +   + + + a+a al ++p+ +a+naG ++ ++ + l+ +h +G+++ G++++kgg +d+ e  ++  l v++  +  ase+ ++il++ddiv 
  MMETSP1137-20121227|5942_1  13 ESKGEHARMSSIMGALAVSDLVKTSLGPKGMDKILQSvGRGNMVsVTNDGATILKSVLIDNPAAKVLIDISKVQDDEVGDGTTSVCVLAGELLRQGAELIEKKMHPQTVVAGFRLARDAALKALNASAVDHSADaaaFREDLINIAKTTLSSKVLSADKEHFAEIAVSAVLKLRGS-----TNLDQIQIIKRIGGGLRDSYLdLDGFLLDKRIG--VGCPKTMKDCKILIANTPMDTDKVKIyGSKVKVDSVSKVAEIEAAEKQKMLDKVDRIIAHGCSVF-----INRQLIYNLPEQRLADAGIMSIEHADFDGIERLGLVLDGDIVSTFDTPDKVKLGQCDKIEEVMIGEDKLVRFIGCPNS-QASSIVLRGANTHVVDEAHRSLHDALCVLSQTVKNTAVLPGGGAPEMLMAQAVEEEAKLVASKHVLAMEAYARALRMMPMHIADNAGYDSAELCAGLKAKHFEGHHSWGLEMEKGGLADMRELGIMEALKVKQQVLLSASEAAEMILRVDDIVQ 518
                 5688999****************************98568985549******************************************************************************976554443333469**********************************996.....8999***************9989******9988..6**********************9983567889999***************************97.....567888999999***************************************************************985.688*****************************************************************************************************************************************************97 PP

>> TIGR02343  chap_CCT_epsi: T-complex protein 1, epsilon subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  350.2   8.7    1e-107  4.2e-105      21     530 ..      12     518 ..       3     520 .. 0.96

  Alignments for each domain:
  == domain 1    score: 350.2 bits;  conditional E-value: 1e-107
   TIGR02343  21 krlkGleakksniaaakavasilrtslGpkGldkilis..kdgditvtndGatilekmdldeeiakllvelsksqdeeiGdGttgvvvlasalleqaeklldkGihpikiaeGfekaakvavekleeiaeeisvded.nketllkaaktslgskivskskrrlaeiavdavlavadlerkdvdfdlikvegkvGgsledtkl.ikGilidkdlshpqmkkevkdakiailtcpfeppkpktk.hkldissveeykklekyekekfeemiddikksGanlvicqwGfddeanhlllqndlpavrwvgGkeleliaiatgGrivprfeelseeklGkaklvreksfGttkdrllvieqskeskavtilvrGgnkliieeakrslhdalcvvrnlikdsrivyGGGaaeiacslaveeeadklsgveqyairafaealeeiplalaensGldpietlsevkakqlkeknpalGvdcleeGtndmkelkvletligkkqqillatqlvkmilkiddvis 530
                 +  kG +a  s i+ a av+ +++tslGpkG+dkil+s  + + ++vtndGatil+++ +d++ ak+l+++sk qd+e+GdGtt+v vla+ ll q  +l++k +hp  +  Gf  a + a++ l+  a + s+d   ++e l++ akt+l+sk++s +k+++aeiav avl++    r   ++d i++ +++Gg l d+ l ++G l+dk +     +k++kd+ki i   p++  k k    k++++sv +  ++e  ek+k+ + +d i   G+++ i +    +  ++ l ++++ ++       +e + +  +G iv+ f+  ++ klG++ +++e  +G  +d+l+    + +s+a +i++rG+n  +++ea+rslhdalcv+   +k++ ++ GGGa e+ ++ aveeea+ +++ +  a+ a+a+al  +p+ +a+n+G+d  e  + +kak  + +  + G++ ++ G  dm+el ++e+l  k+q +l a++  +mil++dd+++
  MMETSP1137-20121227|5942_1  12 QESKGEHARMSSIMGALAVSDLVKTSLGPKGMDKILQSvgRGNMVSVTNDGATILKSVLIDNPAAKVLIDISKVQDDEVGDGTTSVCVLAGELLRQGAELIEKKMHPQTVVAGFRLARDAALKALNASAVDHSADAAaFREDLINIAKTTLSSKVLSADKEHFAEIAVSAVLKL----RGSTNLDQIQIIKRIGGGLRDSYLdLDGFLLDKRIGV-GCPKTMKDCKILIANTPMDTDKVKIYgSKVKVDSVSKVAEIEAAEKQKMLDKVDRIIAHGCSVFINRQLIYNLPEQRLADAGIMSIEHADFDGIERLGLVLDGDIVSTFDTPDKVKLGQCDKIEEVMIG--EDKLVRFIGCPNSQASSIVLRGANTHVVDEAHRSLHDALCVLSQTVKNTAVLPGGGAPEMLMAQAVEEEAKLVASKHVLAMEAYARALRMMPMHIADNAGYDSAELCAGLKAKHFEGH-HSWGLEMEKGGLADMRELGIMEALKVKQQVLLSASEAAEMILRVDDIVQ 518
                 56799*******************************983345779*********************************************************************************9998888887659*********************************87....7789******************99789*******986.689*********************86379************************************99999999999*************************************************9999..68999999*********************************************************************************************************99765.679*******************************************986 PP

>> TIGR02344  chap_CCT_gamma: T-complex protein 1, gamma subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  282.9   6.7   2.3e-87   9.3e-85       1     522 [.       3     519 ..       3     523 .. 0.91

  Alignments for each domain:
  == domain 1    score: 282.9 bits;  conditional E-value: 2.3e-87
   TIGR02344   1 pvlvlnqntkresGrkaqlsniqaakavadiirttlGpkamlkmlldp.lGgiv.ltndGnailreidvahpaakslielsrtqdeevGdGttsviilaGellaaaepfleknihptvivraykkaledalkvleelsipvdved...eakllklvkssigtkfvsrwsdlvvdlaldavktvkleerngrklevdikryakvekipGGeiedsav.lkGvllnkdvthpkmrrkienprivlldcpleykkgesq.tnveilkeedwnrllqleeeevkklceeiiavkpdlvitekGvsdlaqhyllkanisairrvrktdnnriarvsGativnrveelkesdvGtgaGlfevkkiGdeyftflteckdpkactillrGaskdvlnevernlqdalavarnvllepklvpGGGatelavsvklkkkakklegveqlpyeavadaleviprtlvqncGvnvirtltelrakhaqeekkalGidGetGkivdmkekgiweplavklqtiktaiesavlllriddivsG 522
                 pv +++++++ ++G++a++s i  a av+d+++t+lGpk m k+l     G +v +tndG +il+ + ++ paak li++s++qd+evGdGttsv +laGell + ++++ek++hp  +v +++ a + alk l+  +++   +    +++l ++ k+++++k+ s  ++  +++a++av  ++ ++ n  +  ++i     +++i GG ++ds++ l+G ll+k +      +++++ +i++ ++p++  k +   ++v++ +  ++ ++   e++++    + iia+ + + i  + + +l +  l+ a+i  i        +r+  v    iv+  +   +  +G+ +  +e  +iG++    +  c + +a +i+lrGa   v++e +r l+dal v    + +  ++pGGGa e+ ++++++++ak +   + l +ea a+al ++p  ++ n+G ++    + l+akh ++ ++++G++ e+G + dm+e gi e+l vk+q++ +a e+a ++lr+ddiv  
  MMETSP1137-20121227|5942_1   3 PVNIFDAEAQESKGEHARMSSIMGALAVSDLVKTSLGPKGMDKILQSVgRGNMVsVTNDGATILKSVLIDNPAAKVLIDISKVQDDEVGDGTTSVCVLAGELLRQGAELIEKKMHPQTVVAGFRLARDAALKALNASAVDHSADAaafREDLINIAKTTLSSKVLSADKEHFAEIAVSAVLKLRGST-NLDQ--IQI-----IKRI-GGGLRDSYLdLDGFLLDKRIGVG-CPKTMKDCKILIANTPMDTDKVKIYgSKVKVDSVSKVAEIEAAEKQKMLDKVDRIIAHGCSVFINRQLIYNLPEQRLADAGIMSIEHADFDGIERLGLVLDGDIVSTFDTPDKVKLGQ-CDKIEEVMIGEDKLVRFIGCPNSQASSIVLRGANTHVVDEAHRSLHDALCVLSQTVKNTAVLPGGGAPEMLMAQAVEEEAKLVASKHVLAMEAYARALRMMPMHIADNAGYDSAELCAGLKAKHFEG-HHSWGLEMEKGGLADMRELGIMEALKVKQQVLLSASEAAEMILRVDDIVQC 519
                 677899999**********************************9865413454449*******************************************************************************9999887766223568889999***********************9887766.4444..333.....3345.6667777655********99765.567899*************9988652678888889999999999999999999**********************************9999999***************999999995.88888889*******99************************************************************************************************************99.79**********************************************975 PP

>> TIGR02346  chap_CCT_theta: T-complex protein 1, theta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  254.1   4.8   1.2e-78   4.9e-76      17     518 ..      17     518 ..       5     524 .. 0.93

  Alignments for each domain:
  == domain 1    score: 254.1 bits;  conditional E-value: 1.2e-78
   TIGR02346  17 eeavlknieaikelseitrtslGPngmnklv..inhleklfvtnDaatilrelevqhPaakllvlaskaqeeelGDgtnlvlvlagelLekaeelirlGlspseiikGyelalkkalevLeelvvl.evkdleekeelikalkaslsskqlgn.edilaelvakaiitvlPknsekfnvdnirvvkllGgslsdsev.lkGlvlkre.aegsvkrvkdakvavfscpldtattetkGt.vLlknaeelldyskgeekkiealikeiadsgvkvivaggsvsdlalhyvekykilvlkisskfelrrlckvvgatalvrlsapspeelGlvdsvkveeigskkvtvikqeeedskistivLrGstknllddieraidDGvnvvkalvkdsrllpGagateieLakklkkyaeklkgleqyaikkfaeafeiiPrtlaenaGlnanevlskLyaahkkgnkslgidiekesdavkdvkeekiyDllaakkfaiklateaavtvLkvDqiim 518
                 e+a + +i     +s++++tslGP+gm+k++  +   + + vtnD atil+ + +  Paak+l+++sk q+ e+GDgt  v vlagelL++  eli+  ++p+ ++ G+ la+++al+ L+   v  ++   + +e+li++ k++lssk l+  ++ +ae+   a++++  +     n+d+i+++k +Gg+l+ds++ l G++l++    g  k +kd k+ + ++p+dt +    G  v + +  ++ +   +e +k+ +++++i   g +v +    + +l    +   +i+ +       + rl  v++   +  +++p   +lG++d+++   ig++k + +    + s+ s ivLrG+ + ++d+  r+++D + v+ + vk+ ++lpG+ga e+ +a+++++ a+ + + + +a++ +a+a  ++P  +a+naG+++ e+ + L a+h +g++s g+++ek+     d++e  i + l+ k+  +  a+eaa  +L+vD i+ 
  MMETSP1137-20121227|5942_1  17 EHARMSSIMGALAVSDLVKTSLGPKGMDKILqsVGRGNMVSVTNDGATILKSVLIDNPAAKVLIDISKVQDDEVGDGTTSVCVLAGELLRQGAELIEKKMHPQTVVAGFRLARDAALKALNASAVDhSADAAAFREDLINIAKTTLSSKVLSAdKEHFAEIAVSAVLKLRGS----TNLDQIQIIKRIGGGLRDSYLdLDGFLLDKRiGVGCPKTMKDCKILIANTPMDTDKVKIYGSkVKVDSVSKVAEIEAAEKQKMLDKVDRIIAHGCSVFINRQLIYNLPEQRLADAGIMSIEHADFDGIERLGLVLDGDIVSTFDTPDKVKLGQCDKIEEVMIGEDKLVRFIGCPN-SQASSIVLRGANTHVVDEAHRSLHDALCVLSQTVKNTAVLPGGGAPEMLMAQAVEEEAKLVASKHVLAMEAYARALRMMPMHIADNAGYDSAELCAGLKAKHFEGHHSWGLEMEKGGL--ADMRELGIMEALKVKQQVLLSASEAAEMILRVDDIVQ 518
                 566677888888999**************9854666778899*******************************************************************************9988835555667899*************9986899999999999887655....89******************9789*9997652689999*********************996589*******************************************************97766669**************************************998887766.899*************************************************************************************************************999977..7**********************************96 PP

>> TIGR02347  chap_CCT_zeta: T-complex protein 1, zeta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  244.1   6.0   1.3e-75   5.5e-73       2     528 ..       4     522 ..       3     525 .. 0.92

  Alignments for each domain:
  == domain 1    score: 244.1 bits;  conditional E-value: 1.3e-75
   TIGR02347   2 vkllnkkaevlrkdaalkvnlnaakglqdvlktnlGPkGtlkmlvs.gaGd.ikltkdGnvllkelqiqhPtasliaraaaaqdditGdGttstviligellkqaerlieeglhPrilteGleiakkealefleklki..kkeeevdrelllevartslrtkleaeladklteivvdavlaikkdeeeidlfmveilemkhklevdtkl.irGlvldhGarhPdmkrkvknvyiltlnvsleyektevn.sgfvyssaeereklveaerkfvddrvkkiielkkkvvekkadkgfvvinqkGidplsldllakegilalrrakrrnlerltlacGGealnsvedltpeslGyaGlvyetvigeekytfieevknPksvtilikgpndhtlkqikdavrdGlravknaiedkcvvaGagafeiallkklkeekksvkGkaklgveafaeallviPkvlvensGydvqevlvkledeadearevvgvdletgesivaelkgiwdnysvkkqllssatviasqlllvdevlraGks 528
                 v++++ +a+ ++ ++a + ++ +a +++d++kt lGPkG  k+l s g G+ + +t dG ++lk + i +P+a+++  ++  qdd +GdGtts+ +l+gell+q  +lie  +hP+ ++ G+ +a+++al+ l+   +    ++   re l+++a+t+l  k+     ++++ei v avl ++ +++   l  ++i++       d  l + G++ld      + ++ +k++ il+ n  ++ +k  ++ s++  +s+ +  ++ +ae++ + d+v +ii               v in++ i +l  + la +gi+++  a    +erl l+  G+ + +++   + +lG +  + e +ige+k      + n ++  i+++g+n h ++  + +++d l  ++ ++++ +v++G ga e+ ++++++ee+k v  k+ l++ea+a al ++P  +++n+Gyd  e  + l++++ e+++  g+++e+g  ++ ++ gi ++++vk+q+l sa+  a  +l vd+++++   
  MMETSP1137-20121227|5942_1   4 VNIFDAEAQESKGEHARMSSIMGALAVSDLVKTSLGPKGMDKILQSvGRGNmVSVTNDGATILKSVLIDNPAAKVLIDISKVQDDEVGDGTTSVCVLAGELLRQGAELIEKKMHPQTVVAGFRLARDAALKALNASAVdhSADAAAFREDLINIAKTTLSSKVLSADKEHFAEIAVSAVLKLRGSTN---LDQIQIIKRIGGGLRDSYLdLDGFLLDKRIG-VGCPKTMKDCKILIANTPMDTDKVKIYgSKVKVDSVSKVAEIEAAEKQKMLDKVDRIIAH-------GC---SVFINRQLIYNLPEQRLADAGIMSIEHADFDGIERLGLVLDGDIVSTFDTPDKVKLGQCDKIEEVMIGEDKLVRFIGCPNSQASSIVLRGANTHVVDEAHRSLHDALCVLSQTVKNTAVLPGGGAPEMLMAQAVEEEAKLVASKHVLAMEAYARALRMMPMHIADNAGYDSAELCAGLKAKHFEGHHSWGLEMEKGGLADMRELGIMEALKVKQQVLLSASEAAEMILRVDDIVQCAPR 522
                 567778899999999*****************************7645665389********************************************************************************99886455667789*********************************998877...4455555444444445544489*****9664.57899*********************9345667788888999999999999999988853.......32...3789999999999***********************************************************98889*************************************************************************************************************************************************************99755 PP

>> TIGR02348  GroEL: chaperonin GroL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.6   1.5   1.9e-15   7.7e-13       8     137 ..      17     144 ..      12     169 .. 0.87
   2 !   37.5   0.2   5.1e-13   2.1e-10     380     521 ..     373     518 ..     364     523 .. 0.85

  Alignments for each domain:
  == domain 1    score: 45.6 bits;  conditional E-value: 1.9e-15
   TIGR02348   8 eearkalekGvdkladavkvtlGPkgrnvvleks.fG.aPkitkdGvtvakeieledkfenlGaklvkevasktndvaGdGtttatvlaqaivkeGlknvaaGanpielkrGiekavekvveelkklskevk 137
                 e+ar +   G  +++d vk+ lGPkg + +l+    G   ++t+dG t+ k++ +++      ak++ ++++  +d  GdGtt  +vla  ++++G   +   + p ++  G   a +++++ l+ ++ + +
  MMETSP1137-20121227|5942_1  17 EHARMSSIMGALAVSDLVKTSLGPKGMDKILQSVgRGnMVSVTNDGATILKSVLIDN----PAAKVLIDISKVQDDEVGDGTTSVCVLAGELLRQGAELIEKKMHPQTVVAGFRLARDAALKALNASAVDHS 144
                 6788888999999*****************985313313579**********98765....5799999*****************************************************99998877654 PP

  == domain 2    score: 37.5 bits;  conditional E-value: 5.1e-13
   TIGR02348 380 Gaatetelkekkarvedalnatraavee.GivaGGGvallraaeklee.lkeksedekvGveivkraleaPlrqiaenaGkdgavvvekvkek...kdeevGfnaatdeyedlveaGiidpakvtrsalqnaasiagllltteavva 521
                 Ga+t + + e    + dal     +v++  +++GGG+  + +a+++ee +k  ++ + + +e   ral+    +ia+naG+d+a +++ +k+k    ++++G + +++   d+ e Gi+++ kv ++ l  a+  a ++l  + +v 
  MMETSP1137-20121227|5942_1 373 GANTHV-VDEAHRSLHDALCVLSQTVKNtAVLPGGGAPEMLMAQAVEEeAKLVASKHVLAMEAYARALRMMPMHIADNAGYDSAELCAGLKAKhfeGHHSWGLEMEKGGLADMRELGIMEALKVKQQVLLSASEAAEMILRVDDIVQ 518
                 666655.5677778999*999888887626789***99999999998868888889999**********99999**************9998733335689***************************************9988775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (526 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       194  (0.047294); expected 82.0 (0.02)
Passed bias filter:                      106  (0.0258411); expected 82.0 (0.02)
Passed Vit filter:                        19  (0.00463189); expected 4.1 (0.001)
Passed Fwd filter:                        10  (0.00243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.55u 0.18s 00:00:00.73 Elapsed: 00:00:01.01
# Mc/sec: 687.39
//
Query:       MMETSP1137-20121227|5943_1  [L=560]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.2e-06   22.1   0.0    9.3e-06   21.5   0.0    1.1  1  TIGR03903 TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
  ------ inclusion threshold ------
      0.033   11.5   0.0      0.054   10.8   0.0    1.2  1  TIGR03724 arch_bud32: Kae1-associated kinase Bud32


Domain annotation for each model (and alignments):
>> TIGR03903  TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.5   0.0   4.6e-09   9.3e-06      91     178 ..     245     320 ..     240     326 .. 0.85

  Alignments for each domain:
  == domain 1    score: 21.5 bits;  conditional E-value: 4.6e-09
   TIGR03903  91 alaaahdaGvvhRDLkPqnimvsaadveshakvLDFGigaLlpgvedadeatltrttevlGsPaYaaPeqLRgepvtaksDlYaWGLi 178
                 +l a h+aG v+RDLkP n+++ ++++    ++ D G++a      d+ +  +t    v G+  Y aPe ++  p t + D ++ G+ 
  MMETSP1137-20121227|5943_1 245 GLEAIHQAGYVYRDLKPGNVLLDVRGQ---VRISDMGLTA------DISKGPIT---HVAGTRGYWAPEVIKAQPYTVQPDWFSLGVT 320
                 57789****************977765...6799***976......55556665...589************************9975 PP

>> TIGR03724  arch_bud32: Kae1-associated kinase Bud32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   2.6e-05     0.054      95     137 ..     238     281 ..     201     288 .. 0.79

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 2.6e-05
   TIGR03724  95 llkevGelvgklHkagivhgDlttsNiivk.ddklyliDfGLgk 137
                 ++ +++  +  +H+ag v+ Dl + N++++  +++ + D+GL  
  MMETSP1137-20121227|5943_1 238 YAASMALGLEAIHQAGYVYRDLKPGNVLLDvRGQVRISDMGLTA 281
                 45667778889******************648899999***975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (560 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        61  (0.0148708); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.14s 00:00:00.52 Elapsed: 00:00:00.88
# Mc/sec: 839.93
//
Query:       MMETSP1137-20121227|5944_1  [L=71]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (71 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        82  (0.0199902); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.13s 00:00:00.26 Elapsed: 00:00:00.26
# Mc/sec: 360.43
//
Query:       MMETSP1137-20121227|5945_1  [L=393]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (393 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       110  (0.0268162); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.13s 00:00:00.42 Elapsed: 00:00:00.45
# Mc/sec: 1152.70
//
Query:       MMETSP1137-20121227|5946_1  [L=188]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (188 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        75  (0.0182838); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.14s 00:00:00.33 Elapsed: 00:00:00.34
# Mc/sec: 729.82
//
Query:       MMETSP1137-20121227|5946_2  [L=342]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (342 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        51  (0.012433); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.15s 00:00:00.41 Elapsed: 00:00:00.53
# Mc/sec: 851.70
//
Query:       MMETSP1137-20121227|5948_1  [L=590]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.1e-25   86.0   3.4    1.7e-05   22.6   0.0    8.6  9  TIGR00756 PPR: pentatricopeptide repeat domain
  ------ inclusion threshold ------
       0.25    9.3   5.5       0.29    9.1   0.1    3.7  5  TIGR03504 FimV_Cterm: FimV C-terminal domain


Domain annotation for each model (and alignments):
>> TIGR00756  PPR: pentatricopeptide repeat domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.0       1.5     3e+03       1       8 [.     134     141 ..     134     142 .. 0.81
   2 !   17.4   0.0   3.7e-07   0.00076       2      34 ..     172     204 ..     171     205 .. 0.96
   3 !   22.6   0.0   8.3e-09   1.7e-05       2      34 ..     207     239 ..     206     240 .. 0.97
   4 ?    1.9   0.0     0.031        63       2      34 ..     242     274 ..     241     275 .. 0.86
   5 ?   -3.2   0.2       1.3   2.6e+03       3      17 ..     278     292 ..     277     303 .. 0.59
   6 ?    3.2   0.0     0.012        24      16      30 ..     398     412 ..     397     415 .. 0.90
   7 !   10.2   0.0   7.3e-05      0.15       4      35 .]     421     452 ..     418     452 .. 0.95
   8 !   18.9   0.0   1.2e-07   0.00024       2      34 ..     454     486 ..     453     487 .. 0.94
   9 ?    3.0   0.0     0.014        29      10      34 ..     497     521 ..     495     522 .. 0.91

  Alignments for each domain:
  == domain 1    score: -3.4 bits;  conditional E-value: 1.5
   TIGR00756   1 vtyntlis 8  
                 +++n++i 
  MMETSP1137-20121227|5948_1 134 ISFNCVIE 141
                 589***97 PP

  == domain 2    score: 17.4 bits;  conditional E-value: 3.7e-07
   TIGR00756   2 tyntlisglckagrveeAlelfdeMkergivPd 34 
                 ty  +++++   g+ e A  l++eMk +gi+Pd
  MMETSP1137-20121227|5948_1 172 TYAGILKAFEAKGDAEGATALLEEMKQKGISPD 204
                 99******************************9 PP

  == domain 3    score: 22.6 bits;  conditional E-value: 8.3e-09
   TIGR00756   2 tyntlisglckagrveeAlelfdeMkergivPd 34 
                 +yn+l+  ++ a ++  A+ +f+ M+++g+vP+
  MMETSP1137-20121227|5948_1 207 CYNSLVTTYALAEDYASAEAVFQNMRKEGVVPT 239
                 8*******************************7 PP

  == domain 4    score: 1.9 bits;  conditional E-value: 0.031
   TIGR00756   2 tyntlisglckagrveeAlelfdeMkergivPd 34 
                 ty   i+ +    + e A +++  M+e+   Pd
  MMETSP1137-20121227|5948_1 242 TYYRYINTCLAKEDAERAYRMLVAMEEEWRTPD 274
                 6777799999999************99987777 PP

  == domain 5    score: -3.2 bits;  conditional E-value: 1.3
   TIGR00756   3 yntlisglckagrve 17 
                 y  +++ + + g+  
  MMETSP1137-20121227|5948_1 278 YKRMMHHFLQMGHSQ 292
                 555777777777655 PP

  == domain 6    score: 3.2 bits;  conditional E-value: 0.012
   TIGR00756  16 veeAlelfdeMkerg 30 
                 v+eA + +++M+++g
  MMETSP1137-20121227|5948_1 398 VDEAYYTLEKMQDSG 412
                 79***********99 PP

  == domain 7    score: 10.2 bits;  conditional E-value: 7.3e-05
   TIGR00756   4 ntlisglckagrveeAlelfdeMkergivPda 35 
                 nt+i + +  g+++ A+  + e ++ +++Pd+
  MMETSP1137-20121227|5948_1 421 NTIIEASALMGDLDRAFATWAEFERFNLKPDT 452
                 9*****************************96 PP

  == domain 8    score: 18.9 bits;  conditional E-value: 1.2e-07
   TIGR00756   2 tyntlisglckagrveeAlelfdeMkergivPd 34 
                 tyn+l+  + + ++++ A++l+++Mk++gi  d
  MMETSP1137-20121227|5948_1 454 TYNALLTTCINTRELSSARRLLNRMKADGIAQD 486
                 9****************************9755 PP

  == domain 9    score: 3.0 bits;  conditional E-value: 0.014
   TIGR00756  10 lckagrveeAlelfdeMkergivPd 34 
                 ++ +++++ A +++ e +++g+vP+
  MMETSP1137-20121227|5948_1 497 HVMQKEFDVASRVYLECISSGLVPT 521
                 67899******************97 PP

>> TIGR03504  FimV_Cterm: FimV C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   0.1   0.00014      0.29       7      29 ..     178     200 ..     178     202 .. 0.85
   2 ?   -3.3   0.0         1   2.1e+03      34      44 .]     307     317 ..     306     317 .. 0.81
   3 ?   -3.6   0.0       1.3   2.6e+03      12      18 ..     430     436 ..     430     437 .. 0.89
   4 ?   -0.2   0.0      0.11   2.3e+02      14      23 ..     467     476 ..     460     483 .. 0.74
   5 ?   -2.8   0.1      0.74   1.5e+03      36      42 ..     545     551 ..     543     553 .. 0.61

  Alignments for each domain:
  == domain 1    score: 9.1 bits;  conditional E-value: 0.00014
   TIGR03504   7 kaYiemGDkegArelLeEVieeG 29 
                 ka+ + GD egA +lLeE  ++G
  MMETSP1137-20121227|5948_1 178 KAFEAKGDAEGATALLEEMKQKG 200
                 678889************76665 PP

  == domain 2    score: -3.3 bits;  conditional E-value: 1
   TIGR03504  34 keeAraLLakL 44 
                 ++eA++L  +L
  MMETSP1137-20121227|5948_1 307 QKEAKQLIPQL 317
                 789*9998776 PP

  == domain 3    score: -3.6 bits;  conditional E-value: 1.3
   TIGR03504  12 mGDkegA 18 
                 mGD++ A
  MMETSP1137-20121227|5948_1 430 MGDLDRA 436
                 99*9988 PP

  == domain 4    score: -0.2 bits;  conditional E-value: 0.11
   TIGR03504  14 DkegArelLe 23 
                 ++ +Ar+lL+
  MMETSP1137-20121227|5948_1 467 ELSSARRLLN 476
                 6789999997 PP

  == domain 5    score: -2.8 bits;  conditional E-value: 0.74
   TIGR03504  36 eAraLLa 42 
                 +A++LL+
  MMETSP1137-20121227|5948_1 545 RAQELLE 551
                 5666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (590 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       175  (0.0426621); expected 82.0 (0.02)
Passed bias filter:                       96  (0.0234032); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.16s 00:00:00.56 Elapsed: 00:00:00.44
# Mc/sec: 1769.85
//
Query:       MMETSP1137-20121227|5949_1  [L=303]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (303 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        20  (0.00487567); expected 82.0 (0.02)
Passed bias filter:                       15  (0.00365675); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.14s 00:00:00.35 Elapsed: 00:00:00.34
# Mc/sec: 1176.26
//
Query:       MMETSP1137-20121227|5950_1  [L=116]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (116 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       101  (0.0246221); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.12s 00:00:00.28 Elapsed: 00:00:00.32
# Mc/sec: 478.46
//
Query:       MMETSP1137-20121227|5951_1  [L=247]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (247 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        78  (0.0190151); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.15s 00:00:00.37 Elapsed: 00:00:00.42
# Mc/sec: 776.22
//
Query:       MMETSP1137-20121227|5952_1  [L=580]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.6e-69  231.4   0.0    2.3e-69  230.8   0.0    1.2  1  TIGR01359 UMP_CMP_kin_fam: UMP-CMP kinase family
      6e-45  151.1   0.0    1.3e-44  150.0   0.0    1.4  1  TIGR01360 aden_kin_iso1: adenylate kinase
      1e-37  127.6   0.0    4.1e-34  115.9   0.0    2.3  1  TIGR01351 adk: adenylate kinases
    0.00065   16.8   0.0      0.001   16.2   0.0    1.2  1  TIGR00064 ftsY: signal recognition particle-docking protein FtsY
  ------ inclusion threshold ------
      0.018   11.7   0.0      0.026   11.2   0.0    1.1  1  TIGR00959 ffh: signal recognition particle protein


Domain annotation for each model (and alignments):
>> TIGR01359  UMP_CMP_kin_fam: UMP-CMP kinase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  230.8   0.0   2.9e-72   2.3e-69       1     184 [.      77     263 ..      77     264 .. 0.96

  Alignments for each domain:
  == domain 1    score: 230.8 bits;  conditional E-value: 2.9e-72
   TIGR01359   1 vvfvlGgPGsGkGtqCakive.....efkfvhlsaGdllreeikregseegelieslikeGkivPsevtvellekaikeseeskkflidGfPrneenleaweklidekvevkfvlfldcseevmvkrllkrgqssGrvddnieslkkrletykeetlpvieyfekknkvkkidaeksveevfeevekif 184
                 v fvlGgPG+GkGtqCa+++e     +++++hlsaGdllr+e++ +gs + elies+ikeGkivP+e+tv+ll +ai+ ++  k+fl+dGfPrn++nl++w++++ +k+++  vl  ++se v+ +rll+rg++sGr+ddn e++kkr+ t++ et pviey+++++ v+  d+++sveev+++ ++++
  MMETSP1137-20121227|5952_1  77 VWFVLGGPGAGKGTQCARVIEyfrqkHLRYTHLSAGDLLRAERS-SGSPQAELIESYIKEGKIVPVEITVKLLLNAIEIDG-GKRFLVDGFPRNTNNLSGWQQTVGSKLNIAGVLVYEVSEAVLEERLLERGKTSGRSDDNVEAIKKRFVTFNGETKPVIEYYRHQGLVHAFDGARSVEEVWADTKSVL 263
                 78*****************8722222568***************.***********************************9.999***************************************************************************************************99987 PP

>> TIGR01360  aden_kin_iso1: adenylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  150.0   0.0   1.6e-47   1.3e-44       5     184 ..      77     262 ..      73     266 .. 0.90

  Alignments for each domain:
  == domain 1    score: 150.0 bits;  conditional E-value: 1.6e-47
   TIGR01360   5 iifivGGpGsGkGtqcekiveky.....GfthlssGdllreevasgsergkklqaimekGelvpldvvldllkeallkalekskGflidGyprevkqGeefekriaea...klvlyldvsedtlvkrllkraetsarvddnektikkrletykkatepvieyyeskgkllkinaegtvddvflevvaa 184
                 + f++GGpG+GkGtqc++++e +      +thls+Gdllr+e +sgs++++ +++ +++G++vp ++ ++ll +a+  +++  k fl+dG+pr+ ++   +++ ++       vl+ +vse  l +rll+r++ts+r ddn ++ikkr+ t+  +t+pvieyy+ +g ++  +  ++v++v+++  + 
  MMETSP1137-20121227|5952_1  77 VWFVLGGPGAGKGTQCARVIEYFrqkhlRYTHLSAGDLLRAERSSGSPQAELIESYIKEGKIVPVEITVKLLLNAI--EIDGGKRFLVDGFPRNTNNLSGWQQTVGSKlniAGVLVYEVSEAVLEERLLERGKTSGRSDDNVEAIKKRFVTFNGETKPVIEYYRHQGLVHAFDGARSVEEVWADTKSV 262
                 579*****************8653333369*********************************************9..688999************988888877653111457999****************************************************************9876655 PP

>> TIGR01351  adk: adenylate kinases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  115.9   0.0     5e-37   4.1e-34       3     211 ..      79     263 ..      77     264 .. 0.92

  Alignments for each domain:
  == domain 1    score: 115.9 bits;  conditional E-value: 5e-37
   TIGR01351   3 vllGpPGsGKGTqakrlaeklg.....lvhistGdllRaevkkktelgkkakeylekGklvpdeiviklvkerleeeedeekgfiLDGfPRtleQaeaLdelleelglkldavielkvpdevlverisgRricpkcgkvynlkfkkpkvecddctaellkqReDDteevvkkRlevYkeqteplieyYkkkgklveidaekkieevlkeileal 211
                  +lG PG+GKGTq++r+ e +      ++h+s+GdllRae +++++ ++ +++y+++Gk+vp ei++kl+ +++e   d  k f++DGfPR+++  +  ++++   +l++  v+  +v++ vl er+ +R                           ++  R+DD+ e++kkR+ +++ +t+p+ieyY+++g ++ +d+ +++eev+++ +++l
  MMETSP1137-20121227|5952_1  79 FVLGGPGAGKGTQCARVIEYFRqkhlrYTHLSAGDLLRAERSSGSPQAELIESYIKEGKIVPVEITVKLLLNAIEI--DGGKRFLVDGFPRNTNNLSGWQQTVG-SKLNIAGVLVYEVSEAVLEERLLERG--------------------------KTSGRSDDNVEAIKKRFVTFNGETKPVIEYYRHQGLVHAFDGARSVEEVWADTKSVL 263
                 579**************998876666699*********************************************77..56788******************987.5699*********************1..........................12349**********************************************998876 PP

>> TIGR00064  ftsY: signal recognition particle-docking protein FtsY
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0   1.3e-06     0.001      19     120 ..       8     117 ..       2     123 .. 0.67

  Alignments for each domain:
  == domain 1    score: 16.2 bits;  conditional E-value: 1.3e-06
   TIGR00064  19 vglevvekiieelkkelkekkvk...eeeklkellkeelkealkeileketklel.....kelkeekkpnvillvGvNGvGKTttiaKlakllkkegkk.vllaAgDTFrA 120
                 v++ +v +i+ +l   +++ + +   +++++++ ++++++ a+k+  e    + +     + ++e + p v+ + G  G+GK t  a++ +++ +++ + + l+AgD  rA
  MMETSP1137-20121227|5952_1   8 VEVGAVGTILRQLSRAMSRASTQaylQKHAISSRIEQAVNAAIKDLPEDPFPV-IakhllTGRPECDVPCVWFVLGGPGAGKGTQCARVIEYFRQKHLRyTHLSAGDLLRA 117
                 56666777777776655554443111344444445555555555433322222.1334457789999***************************99987357******999 PP

>> TIGR00959  ffh: signal recognition particle protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   3.1e-05     0.026      85     141 ..      61     117 ..      29     136 .. 0.80

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 3.1e-05
   TIGR00959  85 lgeesaelklaekkpavillvGLqGsGKtttaaKlakklkkkekkkvllvalDlyRp 141
                 ++++  + + +   p v++++G  G+GK t +a++ ++ ++k+ + + l a Dl R+
  MMETSP1137-20121227|5952_1  61 IAKHLLTGRPECDVPCVWFVLGGPGAGKGTQCARVIEYFRQKHLRYTHLSAGDLLRA 117
                 5555444455556799**********************9999***********9996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (580 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       109  (0.0265724); expected 82.0 (0.02)
Passed bias filter:                      108  (0.0263286); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.43u 0.14s 00:00:00.57 Elapsed: 00:00:00.56
# Mc/sec: 1367.03
//
Query:       MMETSP1137-20121227|5953_1  [L=349]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (349 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       120  (0.029254); expected 82.0 (0.02)
Passed bias filter:                       97  (0.023647); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.14s 00:00:00.42 Elapsed: 00:00:00.54
# Mc/sec: 853.04
//
Query:       MMETSP1137-20121227|5954_1  [L=141]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (141 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        77  (0.0187713); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.12s 00:00:00.27 Elapsed: 00:00:00.43
# Mc/sec: 432.80
//
Query:       MMETSP1137-20121227|5955_1  [L=203]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (203 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       136  (0.0331546); expected 82.0 (0.02)
Passed bias filter:                      109  (0.0265724); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.18s 00:00:00.39 Elapsed: 00:00:00.79
# Mc/sec: 339.16
//
Query:       MMETSP1137-20121227|5956_1  [L=683]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0021   15.7   0.2      0.008   13.8   0.1    1.8  1  TIGR00231 small_GTP: small GTP-binding protein domain


Domain annotation for each model (and alignments):
>> TIGR00231  small_GTP: small GTP-binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.1     2e-06     0.008      41     126 ..      51     142 ..      46     152 .. 0.71

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 2e-06
   TIGR00231  41 yvteqieedGktykvnllDTaGqedfdairrlyvreverslevvdivilvldv.....eeglekqt....keiiheakkkgvpiilvvnKiDlkd 126
                 +v++ ++++   +k +++D++Gq   ++ + + + +v+++++v+ i+ + ++v     + + +++      +i ++   k++ iil++nK Dl  
  MMETSP1137-20121227|5956_1  51 IVQQNFQIKD--KKYTMFDVGGQRNERRKWIHCFDNVTALIFVTAISEY-DQVlyedeNTNRMDEAlllfDQICNHPSFKKTSIILFLNKRDLFM 142
                 5777899999..569***************************9999765.3331111022222222222235677777799*********99865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (683 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        93  (0.0226719); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.16s 00:00:00.56 Elapsed: 00:00:00.45
# Mc/sec: 2003.30
//
Query:       MMETSP1137-20121227|5957_1  [L=279]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (279 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        67  (0.0163335); expected 82.0 (0.02)
Passed bias filter:                       39  (0.00950756); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.14s 00:00:00.39 Elapsed: 00:00:00.28
# Mc/sec: 1269.83
//
Query:       MMETSP1137-20121227|5958_1  [L=249]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (249 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       125  (0.0304729); expected 82.0 (0.02)
Passed bias filter:                      105  (0.0255973); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.16s 00:00:00.36 Elapsed: 00:00:00.36
# Mc/sec: 912.92
//
Query:       MMETSP1137-20121227|5959_1  [L=125]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (125 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        56  (0.0136519); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.17s 00:00:00.32 Elapsed: 00:00:00.31
# Mc/sec: 532.21
//
Query:       MMETSP1137-20121227|5960_1  [L=60]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        65  (0.0158459); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.35
# Mc/sec: 226.27
//
Query:       MMETSP1137-20121227|5961_1  [L=347]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (347 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        69  (0.0168211); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.14s 00:00:00.39 Elapsed: 00:00:00.43
# Mc/sec: 1065.12
//
Query:       MMETSP1137-20121227|5962_1  [L=113]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (113 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        96  (0.0234032); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.10s 00:00:00.25 Elapsed: 00:00:00.25
# Mc/sec: 596.59
//
Query:       MMETSP1137-20121227|5963_1  [L=214]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.2e-07   29.3   0.1    1.7e-07   28.8   0.1    1.3  1  TIGR03467 HpnE: squalene-associated FAD-dependent desaturase
    3.9e-07   27.1   0.3    5.5e-07   26.6   0.2    1.1  1  TIGR01317 GOGAT_sm_gam: glutamate synthase, NADH/NADPH, small subunit
    8.4e-07   25.8   0.0      1e-06   25.5   0.0    1.1  1  TIGR02734 crtI_fam: phytoene desaturase
    2.5e-06   24.5   0.0    3.3e-06   24.1   0.0    1.1  1  TIGR02732 zeta_caro_desat: carotene 7,8-desaturase
    2.5e-06   23.0   0.3    3.4e-06   22.6   0.2    1.1  1  TIGR03315 Se_ygfK: putative selenate reductase, YgfK subunit
    3.5e-06   23.5   0.4    4.8e-06   23.0   0.2    1.1  1  TIGR03997 mycofact_OYE_2: mycofactocin system FadH/OYE family oxidoreductase 2
    6.1e-06   23.0   0.0    6.1e-06   23.0   0.0    1.1  1  TIGR02731 phytoene_desat: phytoene desaturase
    1.5e-05   21.6   0.2      2e-05   21.3   0.1    1.1  1  TIGR02733 desat_CrtD: C-3',4' desaturase CrtD
    1.6e-05   22.0   1.2    2.2e-05   21.5   0.8    1.1  1  TIGR03197 MnmC_Cterm: tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain
    3.1e-05   20.8   0.2    4.3e-05   20.3   0.2    1.1  1  TIGR01316 gltA: glutamate synthase (NADPH), homotetrameric
    0.00013   18.6   0.2    0.00016   18.3   0.2    1.1  1  TIGR00551 nadB: L-aspartate oxidase
    0.00019   18.6   0.6    0.00037   17.6   0.1    1.6  2  TIGR00292 TIGR00292: thiazole biosynthesis enzyme
    0.00022   18.2   0.8    0.00032   17.7   0.6    1.2  1  TIGR03364 HpnW_proposed: FAD dependent oxidoreductase TIGR03364
    0.00023   17.7   0.0    0.00032   17.2   0.0    1.2  1  TIGR00562 proto_IX_ox: protoporphyrinogen oxidase
    0.00036   17.0   0.1     0.0005   16.6   0.1    1.1  1  TIGR01318 gltD_gamma_fam: glutamate synthase, small subunit
    0.00041   17.4   0.0    0.00049   17.1   0.0    1.1  1  TIGR02352 thiamin_ThiO: glycine oxidase ThiO
     0.0012   15.6   0.5     0.0016   15.2   0.3    1.1  1  TIGR01988 Ubi-OHases: ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family
     0.0026   14.1   0.4     0.0035   13.7   0.2    1.1  1  TIGR03996 mycofact_OYE_1: mycofactocin system FadH/OYE family oxidoreductase 1
     0.0027   14.4   1.2     0.0037   13.9   0.8    1.1  1  TIGR00275 TIGR00275: flavoprotein, HI0933 family
      0.003   15.1   0.2      0.004   14.7   0.2    1.1  1  TIGR02032 GG-red-SF: geranylgeranyl reductase family
     0.0047   13.5   0.1     0.0058   13.2   0.0    1.1  1  TIGR01813 flavo_cyto_c: flavocytochrome c
  ------ inclusion threshold ------
      0.011   12.3   0.0      0.014   11.9   0.0    1.1  1  TIGR03026 NDP-sugDHase: nucleotide sugar dehydrogenase
      0.014   11.9   0.3      0.018   11.5   0.2    1.1  1  TIGR03219 salicylate_mono: salicylate 1-monooxygenase
      0.027   11.3   0.1      0.034   11.0   0.0    1.1  1  TIGR02023 BchP-ChlP: geranylgeranyl reductase
      0.033   10.5   0.1      0.043   10.2   0.1    1.1  1  TIGR03140 AhpF: alkyl hydroperoxide reductase, F subunit
      0.045   10.5   0.1      0.068    9.9   0.0    1.2  1  TIGR00031 UDP-GALP_mutase: UDP-galactopyranose mutase


Domain annotation for each model (and alignments):
>> TIGR03467  HpnE: squalene-associated FAD-dependent desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.8   0.1   1.1e-09   1.7e-07       1      41 [.      16      55 ..      16      95 .. 0.87

  Alignments for each domain:
  == domain 1    score: 28.8 bits;  conditional E-value: 1.1e-09
   TIGR03467  1 vvvvGgGlAGLaAAveLaraGvrvtllEarrqlGGRarsfe 41
                ++vvG G+AGLaAA  Lar+  +vt++E++ +lG  a s  
  MMETSP1137-20121227|5963_1 16 IAVVGSGIAGLAAAHLLARK-HKVTVFERAAALGMDAHSLD 55
                68*****************9.9************8888865 PP

>> TIGR01317  GOGAT_sm_gam: glutamate synthase, NADH/NADPH, small subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.6   0.2   3.5e-09   5.5e-07     144     179 ..      14      48 ..       8      50 .. 0.89

  Alignments for each domain:
  == domain 1    score: 26.6 bits;  conditional E-value: 3.5e-09
   TIGR01317 144 kkvavvGsGPaGlaaadqlnraGhtvtvferedrvG 179
                 k +avvGsG aGlaaa+ l+r  h+vtvfer+   G
  MMETSP1137-20121227|5963_1  14 KSIAVVGSGIAGLAAAHLLARK-HKVTVFERAAALG 48 
                 689****************995.********87655 PP

>> TIGR02734  crtI_fam: phytoene desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.5   0.0   6.6e-09     1e-06       2      48 ..      17      62 ..      16      83 .. 0.91

  Alignments for each domain:
  == domain 1    score: 25.5 bits;  conditional E-value: 6.6e-09
   TIGR02734  2 vViGaGlgGLAlAirLaaaGievtvlekrdkpGGRagvleedGfrfD 48
                 V+G+G++GLA+A +La++ ++vtv+e+ +++G  a +l   G r+D
  MMETSP1137-20121227|5963_1 17 AVVGSGIAGLAAAHLLARK-HKVTVFERAAALGMDAHSLDCCGARMD 62
                7**********99888877.9************99999999998888 PP

>> TIGR02732  zeta_caro_desat: carotene 7,8-desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.1   0.0   2.1e-08   3.3e-06       2      72 ..      16      85 ..      15      92 .. 0.89

  Alignments for each domain:
  == domain 1    score: 24.1 bits;  conditional E-value: 2.1e-08
   TIGR02732  2 vaivgaglaglatavelvdaghevelyesrsflggkvgswvdkdgnhiemglhvffgcya.nlfkllkkvga 72
                +a+vg+g+agla+a +l+ + h+v ++e  + lg    s  d  g  +++ l vf  +y+ nl kl  ++g 
  MMETSP1137-20121227|5963_1 16 IAVVGSGIAGLAAA-HLLARKHKVTVFERAAALGMDAHS-LDCCGARMDIPLRVFSEAYYpNLCKLYTHLGI 85
                8**********987.788999*******99999999887.699************99876599999988875 PP

>> TIGR03315  Se_ygfK: putative selenate reductase, YgfK subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.6   0.2   2.1e-08   3.4e-06     531     571 ..       7      46 ..       2      52 .. 0.87

  Alignments for each domain:
  == domain 1    score: 22.6 bits;  conditional E-value: 2.1e-08
   TIGR03315 531 pqlksekhkvaviGaGPaGlsagyflaraGlpvtvfekkek 571
                  ++ s+++ +av+G+G aGl+a+++lar+ ++vtvfe+ + 
  MMETSP1137-20121227|5963_1   7 DDGGSKRKSIAVVGSGIAGLAAAHLLARK-HKVTVFERAAA 46 
                 566788899*******************8.89*****9875 PP

>> TIGR03997  mycofact_OYE_2: mycofactocin system FadH/OYE family oxidoreductase 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.0   0.2     3e-08   4.8e-06     377     416 ..      11      49 ..       5      63 .. 0.88

  Alignments for each domain:
  == domain 1    score: 23.0 bits;  conditional E-value: 3e-08
   TIGR03997 377 rrrkkvlvvGgGPaGleaaataarrGhrvtllereeelGG 416
                 ++rk + vvG+G aGl+aa+  ar  h+vt++er+++lG 
  MMETSP1137-20121227|5963_1  11 SKRKSIAVVGSGIAGLAAAHLLAR-KHKVTVFERAAALGM 49 
                 56799*************999885.6**********9995 PP

>> TIGR02731  phytoene_desat: phytoene desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.0   0.0   3.9e-08   6.1e-06       2      73 ..      16      86 ..      15     182 .. 0.90

  Alignments for each domain:
  == domain 1    score: 23.0 bits;  conditional E-value: 3.9e-08
   TIGR02731  2 vaiagaglaglsaakyladaghtpivleardvlggkvaawkdedgdwyetglhiffga.ypnllqllkelnie 73
                +a+ g+g+agl+aa+ la   h+  v+e++  lg   a   d  g  ++  l +f  a ypnl +l+  l+i+
  MMETSP1137-20121227|5963_1 16 IAVVGSGIAGLAAAHLLAR-KHKVTVFERAAALGMD-AHSLDCCGARMDIPLRVFSEAyYPNLCKLYTHLGIK 86
                7899*********998875.7999*********865.667899************99846**********996 PP

>> TIGR02733  desat_CrtD: C-3',4' desaturase CrtD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3   0.1   1.3e-07     2e-05       2      39 ..      14      50 ..      13      63 .. 0.88

  Alignments for each domain:
  == domain 1    score: 21.3 bits;  conditional E-value: 1.3e-07
   TIGR02733  2 ksvvviGaGiaGltaaallakrGlevtlleaaaqvGGC 39
                ks+ v+G+GiaGl+aa lla++  +vt++e aa +G  
  MMETSP1137-20121227|5963_1 14 KSIAVVGSGIAGLAAAHLLARK-HKVTVFERAAALGMD 50
                689****************987.79*******999865 PP

>> TIGR03197  MnmC_Cterm: tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.5   0.8   1.4e-07   2.2e-05       2      38 ..      16      51 ..      15      58 .. 0.88

  Alignments for each domain:
  == domain 1    score: 21.5 bits;  conditional E-value: 1.4e-07
   TIGR03197  2 vavIGaGiAgaalalsLarrGvqvtllekdeklaqgA 38
                +av+G GiAg+a+a+ La r ++vt++e++++l+ +A
  MMETSP1137-20121227|5963_1 16 IAVVGSGIAGLAAAHLLA-RKHKVTVFERAAALGMDA 51
                9**********9998665.679**********99988 PP

>> TIGR01316  gltA: glutamate synthase (NADPH), homotetrameric
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   0.2   2.7e-07   4.3e-05     131     164 ..      11      43 ..       4      49 .. 0.86

  Alignments for each domain:
  == domain 1    score: 20.3 bits;  conditional E-value: 2.7e-07
   TIGR01316 131 stkkkvaviGaGpaGlavaselakkGhevtvfea 164
                 s +k +av+G+G aGla a+ la+k h+vtvfe 
  MMETSP1137-20121227|5963_1  11 SKRKSIAVVGSGIAGLAAAHLLARK-HKVTVFER 43 
                 456789*****************98.9*****95 PP

>> TIGR00551  nadB: L-aspartate oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.2     1e-06   0.00016       3      33 ..      14      44 ..      12      54 .. 0.89

  Alignments for each domain:
  == domain 1    score: 18.3 bits;  conditional E-value: 1e-06
   TIGR00551  3 advvviGsGaagLsaalalaekyrvvvlska 33
                + ++v+GsG+agL+aa  la+k++v+v  +a
  MMETSP1137-20121227|5963_1 14 KSIAVVGSGIAGLAAAHLLARKHKVTVFERA 44
                689************************9876 PP

>> TIGR00292  TIGR00292: thiazole biosynthesis enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.1   2.3e-06   0.00037      23      57 ..      15      48 ..      11      54 .. 0.90
   2 ?   -2.8   0.0       3.9   6.2e+02     209     221 ..     105     117 ..     102     119 .. 0.80

  Alignments for each domain:
  == domain 1    score: 17.6 bits;  conditional E-value: 2.3e-06
   TIGR00292 23 DviivGaGpsGLtaayylakeglkvvvlerklaiG 57
                 +++vG+G +GL+aa+ la++  kv v+er  a+G
  MMETSP1137-20121227|5963_1 15 SIAVVGSGIAGLAAAHLLARKH-KVTVFERAAALG 48
                579****************985.********9998 PP

  == domain 2    score: -2.8 bits;  conditional E-value: 3.9
   TIGR00292 209 revvdnlyvaGma 221
                 +  + n++v+Gma
  MMETSP1137-20121227|5963_1 105 YFRYVNVFVSGMA 117
                 556889******8 PP

>> TIGR03364  HpnW_proposed: FAD dependent oxidoreductase TIGR03364
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.6     2e-06   0.00032       2      33 ..      15      45 ..      14      51 .. 0.85

  Alignments for each domain:
  == domain 1    score: 17.7 bits;  conditional E-value: 2e-06
   TIGR03364  2 dvvvvGaGivGlahAlaaarrGlkVtvierss 33
                +++vvG+Gi Gla A +  +r +kVtv+er++
  MMETSP1137-20121227|5963_1 15 SIAVVGSGIAGLAAA-HLLARKHKVTVFERAA 45
                689*********966.667777********86 PP

>> TIGR00562  proto_IX_ox: protoporphyrinogen oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.0     2e-06   0.00032       2      40 ..      13      48 ..      12      66 .. 0.85

  Alignments for each domain:
  == domain 1    score: 17.2 bits;  conditional E-value: 2e-06
   TIGR00562  2 kkkvvvvGgGisGLciayalekerpdvelvlvEakdRvG 40
                +k ++vvG+Gi+GL++a+ l++++    ++++E     G
  MMETSP1137-20121227|5963_1 13 RKSIAVVGSGIAGLAAAHLLARKH---KVTVFERAAALG 48
                7899******************95...588888776665 PP

>> TIGR01318  gltD_gamma_fam: glutamate synthase, small subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.1   3.2e-06    0.0005     141     177 ..      13      48 ..       6      54 .. 0.90

  Alignments for each domain:
  == domain 1    score: 16.6 bits;  conditional E-value: 3.2e-06
   TIGR01318 141 gkrvaviGaGpaGlacadvlaraGvkvvvfdrypeiG 177
                  k +av+G+G aGla a +lar   kv+vf+r  ++G
  MMETSP1137-20121227|5963_1  13 RKSIAVVGSGIAGLAAAHLLARK-HKVTVFERAAALG 48 
                 6789******************8.59******98887 PP

>> TIGR02352  thiamin_ThiO: glycine oxidase ThiO
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.0   3.1e-06   0.00049       1      31 [.      16      46 ..      16      90 .. 0.79

  Alignments for each domain:
  == domain 1    score: 17.1 bits;  conditional E-value: 3.1e-06
   TIGR02352  1 vlviGgGviGlsvAveLakrghkvtllekd.e 31
                ++v+G G+ Gl+ A+ La r hkvt++e++  
  MMETSP1137-20121227|5963_1 16 IAVVGSGIAGLAAAHLLA-RKHKVTVFERAaA 46
                69**********887665.679******9933 PP

>> TIGR01988  Ubi-OHases: ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.3     1e-05    0.0016       2      35 ..      16      47 ..      15      59 .. 0.87

  Alignments for each domain:
  == domain 1    score: 15.2 bits;  conditional E-value: 1e-05
   TIGR01988  2 ivIvGgGlvGlalAlaLassadlkvalveakaae 35
                i++vG+G++Gla A  La+++  kv+++e++aa 
  MMETSP1137-20121227|5963_1 16 IAVVGSGIAGLAAAHLLARKH--KVTVFERAAAL 47
                89****************988..9***9998775 PP

>> TIGR03996  mycofact_OYE_1: mycofactocin system FadH/OYE family oxidoreductase 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   0.2   2.2e-05    0.0035     373     408 ..      14      48 ..       4      63 .. 0.87

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 2.2e-05
   TIGR03996 373 gdvlvvGGGpaGleaarvlavrGhrvtlaeasarlG 408
                  ++ vvG G aGl aa +la r h+vt+ e++a lG
  MMETSP1137-20121227|5963_1  14 KSIAVVGSGIAGLAAAHLLA-RKHKVTVFERAAALG 48 
                 5678*************997.78***********99 PP

>> TIGR00275  TIGR00275: flavoprotein, HI0933 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.8   2.4e-05    0.0037       1      34 [.      16      48 ..      16      51 .. 0.90

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 2.4e-05
   TIGR00275  1 viiiGgGaaGlmaAitaaeegakVlllEknkkig 34
                ++++G G aGl aA  +a +++kV+++E++  +g
  MMETSP1137-20121227|5963_1 16 IAVVGSGIAGLAAAHLLA-RKHKVTVFERAAALG 48
                68*********9999999.59*******998876 PP

>> TIGR02032  GG-red-SF: geranylgeranyl reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.2   2.5e-05     0.004       5      41 ..      18      57 ..      15      72 .. 0.84

  Alignments for each domain:
  == domain 1    score: 14.7 bits;  conditional E-value: 2.5e-05
   TIGR02032  5 vvGaGpaGssaAlrlakkGlrVlllekkelpre....keCg 41
                vvG G+aG +aA  la+k ++V ++e++++ +     + C 
  MMETSP1137-20121227|5963_1 18 VVGSGIAGLAAAHLLARK-HKVTVFERAAALGMdahsLDCC 57
                9*******9999999999.********99887644455555 PP

>> TIGR01813  flavo_cyto_c: flavocytochrome c
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   0.0   3.7e-05    0.0058       2      37 ..      16      49 ..      15      68 .. 0.84

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 3.7e-05
   TIGR01813  2 vvvvGsGlAGlsaaleakkaglaevvvleKapviGG 37
                + vvGsG+AGl+aa  + ++   +v v e+a+++G 
  MMETSP1137-20121227|5963_1 16 IAVVGSGIAGLAAAHLLARKH--KVTVFERAAALGM 49
                78************9998888..89999*9999985 PP

>> TIGR03026  NDP-sugDHase: nucleotide sugar dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   9.2e-05     0.014       2      30 ..      15      42 ..      14      46 .. 0.90

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 9.2e-05
   TIGR03026  2 kiavvGlGYvGlplaallaekgheVvgvD 30
                 iavvG G  Gl+ a+ll ++ h+V++++
  MMETSP1137-20121227|5963_1 15 SIAVVGSGIAGLAAAHLL-ARKHKVTVFE 42
                69**************99.8899**9987 PP

>> TIGR03219  salicylate_mono: salicylate 1-monooxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.2   0.00012     0.018       2      37 ..      15      48 ..      14      54 .. 0.84

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 0.00012
   TIGR03219  2 rvaiiGGGiaGvalalelsksshlnvklfeaapafg 37
                ++a++G GiaG+a a  l+++   +v++fe a a+g
  MMETSP1137-20121227|5963_1 15 SIAVVGSGIAGLAAAHLLARKH--KVTVFERAAALG 48
                69***********998888876..567799988876 PP

>> TIGR02023  BchP-ChlP: geranylgeranyl reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00022     0.034       3      50 ..      16      70 ..      14      77 .. 0.64

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 0.00022
   TIGR02023  3 vlviGggpsGaaaaetLakagievillerel.....arikPCGGa...iPlaliee 50
                ++v+G+g +G aaa+ La++ + v ++er+      a+   C Ga   iPl++++e
  MMETSP1137-20121227|5963_1 16 IAVVGSGIAGLAAAHLLARKHK-VTVFERAAalgmdAHSLDCCGArmdIPLRVFSE 70
                89****************9865.555677631111112233444445567777666 PP

>> TIGR03140  AhpF: alkyl hydroperoxide reductase, F subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.1   0.00027     0.043     351     391 ..      12      51 ..       6      67 .. 0.85

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 0.00027
   TIGR03140 351 kgkkvaviGGGnsGieaaidlaGivehvtvlefadelkadk 391
                 k k++av+G G +G+ aa  la   ++vtv+e a +l  d+
  MMETSP1137-20121227|5963_1  12 KRKSIAVVGSGIAGLAAAHLLAR-KHKVTVFERAAALGMDA 51 
                 6799***********99987775.789*****999987775 PP

>> TIGR00031  UDP-GALP_mutase: UDP-galactopyranose mutase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.0   0.00043     0.068       4      43 ..      16      54 ..      14      63 .. 0.84

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 0.00043
   TIGR00031  4 yiivGaGlsGivlaeilaklnkrvlvvekrnhiGGncyde 43
                + +vG+G++G   a+ la++ ++v v e+   +G +++  
  MMETSP1137-20121227|5963_1 16 IAVVGSGIAGLAAAHLLARK-HKVTVFERAAALGMDAHSL 54
                569************99986.5799*****9999887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (214 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       142  (0.0346173); expected 82.0 (0.02)
Passed bias filter:                      137  (0.0333983); expected 82.0 (0.02)
Passed Vit filter:                        53  (0.0129205); expected 4.1 (0.001)
Passed Fwd filter:                        26  (0.00633837); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              26  [number of targets reported over threshold]
# CPU time: 0.29u 0.16s 00:00:00.44 Elapsed: 00:00:00.56
# Mc/sec: 504.39
//
Query:       MMETSP1137-20121227|5964_1  [L=613]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (613 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        91  (0.0221843); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.16s 00:00:00.57 Elapsed: 00:00:00.52
# Mc/sec: 1555.95
//
Query:       MMETSP1137-20121227|5965_1  [L=143]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.16    9.7   5.0       0.25    9.0   2.2    1.9  2  TIGR01144 ATP_synt_b: ATP synthase F0, B subunit
        1.1    4.6   6.7        1.2    4.5   4.7    1.0  1  TIGR00927 2A1904: K+-dependent Na+/Ca+ exchanger


Domain annotation for each model (and alignments):
>> TIGR01144  ATP_synt_b: ATP synthase F0, B subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   0.2    0.0017       3.4      38      85 ..      52      99 ..      41     103 .. 0.75
   2 ?    9.0   2.2   0.00012      0.25      35      87 ..      70     123 ..      63     143 .] 0.61

  Alignments for each domain:
  == domain 1    score: 5.4 bits;  conditional E-value: 0.0017
   TIGR01144 38 aekakkelalaqkkaqellkeakeeaaeiienAnkrkseikeeikkeA 85
                a++a ++l +++  a++ l++ak+  +     A+ ++s    ++k++A
  MMETSP1137-20121227|5965_1 52 AQEAGEKLGDVESGAKDTLSDAKSSVSGAASSAKDKASGTVGDVKDKA 99
                556667777788888888888888888888888888888777777776 PP

  == domain 2    score: 9.0 bits;  conditional E-value: 0.00012
   TIGR01144  35 lasaekakk.elalaqkkaqellkeakeeaaeiienAnkrkseikeeikkeAee 87 
                 l++a+ +    +  a++ka+  + + k++a  i  +A+ ++s i  ++k++A +
  MMETSP1137-20121227|5965_1  70 LSDAKSSVSgAASSAKDKASGTVGDVKDKAGGIAGDAKDKASGIAGDAKEKAAD 123
                 555555443134456666777777777777777777777777777777766654 PP

>> TIGR00927  2A1904: K+-dependent Na+/Ca+ exchanger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   4.7   0.00059       1.2     889     982 ..      43     133 ..      15     141 .. 0.62

  Alignments for each domain:
  == domain 1    score: 4.5 bits;  conditional E-value: 0.00059
   TIGR00927 889 ededeGeieaeedgevkGdegeeqkveaeeeeeedekdegeedeeeiaddeevkdetgeqelnaenqgeakedekGvdgeggsdGGdseeeeee 982
                 ++e   e  a+e ge  Gd +   ++ ++  +++++ + g  ++ + +++  v d ++++  +a + ++ + +  G   e+ +d Gds  e  e
  MMETSP1137-20121227|5965_1  43 QEETSAEKYAQEAGEKLGDVE---SGAKDTLSDAKSSVSGAASSAKDKASGTVGDVKDKAGGIAGDAKDKASGIAGDAKEKAADAGDSASEASE 133
                 445556666677777777666...4445555555555666555555555555555555555555555555555555555667777777776655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (143 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        96  (0.0234032); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.18u 0.14s 00:00:00.32 Elapsed: 00:00:00.32
# Mc/sec: 589.83
//
Query:       MMETSP1137-20121227|5966_1  [L=667]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (667 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       150  (0.0365675); expected 82.0 (0.02)
Passed bias filter:                      100  (0.0243784); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.17s 00:00:00.57 Elapsed: 00:00:00.50
# Mc/sec: 1760.73
//
Query:       MMETSP1137-20121227|5967_1  [L=291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (291 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       146  (0.0355924); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.17s 00:00:00.43 Elapsed: 00:00:00.35
# Mc/sec: 1097.40
//
Query:       MMETSP1137-20121227|5969_1  [L=268]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0011   15.8   0.0     0.0021   14.9   0.0    1.4  1  TIGR02860 spore_IV_B: stage IV sporulation protein B
     0.0013   15.6   0.3     0.0023   14.7   0.0    1.5  2  TIGR02037 degP_htrA_DO: peptidase Do


Domain annotation for each model (and alignments):
>> TIGR02860  spore_IV_B: stage IV sporulation protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0     1e-06    0.0021     121     180 ..     164     223 ..     156     232 .. 0.86

  Alignments for each domain:
  == domain 1    score: 14.9 bits;  conditional E-value: 1e-06
   TIGR02860 121 kiesPaeeagiqv.GDlilkvngekikeeedvaklineaggeklkltikRkkkkiekklkp 180
                 +i+s +++ag+ + GD+il+vng ++ ++ d ++++++++g  ++l ++R++k+i+ ++++
  MMETSP1137-20121227|5969_1 164 HITSTGAAAGVVLpGDVILEVNGMPVTDHIDASTTLRKSKG-IIRLLLQRGDKRIRCSVHK 223
                 56777888887655**********************99987.79***********988865 PP

>> TIGR02037  degP_htrA_DO: peptidase Do
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.1       0.2   4.2e+02     240     264 ..      26      48 ..       9      78 .. 0.51
   2 !   14.7   0.0   1.1e-06    0.0023     368     432 ..     158     219 ..     124     221 .. 0.74

  Alignments for each domain:
  == domain 1    score: -2.6 bits;  conditional E-value: 0.2
   TIGR02037 240 vkiqevtkdlakslglekakGalva 264
                 v++  ++++ ak++ +++a +a  +
  MMETSP1137-20121227|5969_1  26 VNV--INTESAKKFHMNTAAAAAAT 48 
                 222..33444444444444333333 PP

  == domain 2    score: 14.7 bits;  conditional E-value: 1.1e-06
   TIGR02037 368 kgvvvtkvkkkspaakaglkkgdvilsvnqkevksvaelkkvleeakkkervlllverggetlfv 432
                 k +v t+++ ++ aa   + +gdvil+vn  +v++  + +  l+  k+k++++ll++rg++++++
  MMETSP1137-20121227|5969_1 158 KSAVATHIT-STGAAAGVVLPGDVILEVNGMPVTDHIDASTTLR--KSKGIIRLLLQRGDKRIRC 219
                 333333333.4445555677999999999999999999999999..6678999999999998865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (268 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       160  (0.0390054); expected 82.0 (0.02)
Passed bias filter:                      128  (0.0312043); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.23u 0.15s 00:00:00.38 Elapsed: 00:00:00.54
# Mc/sec: 655.06
//
Query:       MMETSP1137-20121227|5970_1  [L=1308]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
          0 1591.6   0.0          0 1591.4   0.0    1.1  1  TIGR02082 metH: methionine synthase
    2.3e-30  103.3   6.6    1.7e-29  100.5   4.6    2.3  1  TIGR02370 pyl_corrinoid: methyltransferase cognate corrinoid proteins, Methanosarcina family
    1.8e-06   25.6   1.0    5.3e-06   24.1   0.4    2.0  2  TIGR01501 MthylAspMutase: methylaspartate mutase, S subunit
    9.2e-05   20.3   0.7    0.00053   17.8   0.5    2.3  1  TIGR00640 acid_CoA_mut_C: methylmalonyl-CoA mutase C-terminal domain


Domain annotation for each model (and alignments):
>> TIGR02082  metH: methionine synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ! 1591.4   0.0         0         0       2    1182 .]      74    1272 ..      73    1272 .. 0.97

  Alignments for each domain:
  == domain 1    score: 1591.4 bits;  conditional E-value: 0
   TIGR02082    2 nkrilvlDGamGtqlqsanLteadFrge.eadl..arelkGnndlLnltkPeviaaihrayfeaGaDivetntFnsteialadYdledkayelnkkaaklarevadeftltpekkRfvaGslGPtnklatlspdverpefrnvtydelvdaYkeqvkglldGGvDllLietvfDtlnakaalfaveevfeekgr.elPilisgvivdksGrtLsGqtleaflaslehaeililGLnCalGadelrefvkelsetaealvsviPnaGLPnalgeYdltpeelakalkefaeegllnivGGCCGttPehiraiaeavkd..ikprkrqeleeksvlsglealkiaqessfvniGeRtnvaGskkfrklikaedyeealkiakqqveeGaqilDinvDevllDgeadmkkllsllasepdiakvPlmlDssefevleaGLkviqGkaivnsislkdGeerFlekaklikeyGaavvvmafDeeGqartadkkieiakRaykllte.kvgfppediifDpniltiatGieehdryaidfieaireikeelPdakisgGvsnvsFslrgndavRealhsvFLyeaikaGlDmgivnagklavyddidkelrevvedlildrr..reatekLlelaelykgtkek...sskeaqeaewrnlpveeRLeralvkGeregieedleearkklkapleiiegpLldGmkvvGdLFGsGkmfLPqvvksarvmkkavayLePylekekeed..............kskGkivlatvkGDvhDiGknivdvvLscngyevvdlGvkvPvekileaakkkkaDviglsGLivksldemvevaeemerrgvkiPlllGGaalskahvavkiaekY.kgevvyvkdaseavkvvdkllsekkkaeelekikeeyeeire.kfgekkeklialsekaarkevfaldrsedlevpapkflGtkvleas.ieellkyiDwkalFvqWelrgkyp.....kilkdeleglearklfkdakelldklsaekllrargvvGlfPaqsvgddieiytdetvsqetkpiatvrekleqlrqqsdr....ylclaDfiaskesGikDylgallvtaglgaeelakkleakeddydsilvkaladrlaealaellhervRkelwgyaeeenldkedllkerYrGirpafGYpacPdhtekatlleLleaer.iGlklteslalaPeasvsglyfahpeakYfav 1182
                  ++ri+v+DGamGt++q+++ te+dFrg+ ++d+  ++elkGnndlL+ t+P+ i++ihr+yf aGaDi etntF++t ia+adY++e+ +yelnk a +la  +a             aG++GPtn++ ++sp+ve+p+frn t+de+v aYk qvkgl+dGG+ ++L+et+fDtlnakaalfa+ e +ee g  +lPi+isg+ivd sGrtLsGqt+eaf++s++ha+ +++GLnCalGad++ +f+++ls+ ae++v  +PnaGLPna+g Yd+tpe+ a+++k f  + l+n +GGCCGttPehi+a+ ++ k+   kpr r++  +++++sgle+l++++   f+niGeR+n+aGs+kf++li +++y++al+ia+ q e+Gaq++D+n+De+llDge +++k+l++l+ epdi+k+P+++Dss+f+++eaGLk++qGk+ivnsislk+Gee+F++kak++k+yGaavvvmafDeeGqa+ ++ ki+i+kRay++l+  kv+fpp diifDpniltiatG+ eh++y++dfi+a+++i  +lP akisgGvsn+sF++rg  a+Rea+h+vFLy+ai++G+ mgivnag + +y+di++ +r+ +e+++l+ +   e  e+Ll++ae  k++ke+   s+k+a++ ewr++pv +RL++alvkG++e++eed+eear+   + le+iegpL++Gm+vvGdLFG+GkmfLPqv+ksarvmkkavayL P++e+ek++               k kG iv++tvkGDvhDiGkniv+vvL+cn+y vvd Gv+  +  il+a  ++kaD++g sGLi++sldemv+va+emer g+kiPll+GGa++sk h+avk+ ++Y +g  ++v das+av+v+++ll++kk+ae++e +ke+yee+re +++ +   ++ l++++ar++++++++  d+ +p+pk lGtkv+e++ + ell++iDw+++F +W+lrgkyp     ki+kde +g ea+kl++da +l+++++++k+l+a+gvvG++Pa+svgddie+y+ ++      ++ t+    ++lrqq++r    y++++Dfia+k+sG+kDy+ga++v++g+g ee+  kl +++ddy  i+++a+adrlaea+aellh ++R elwgya +e+ d++d+lk +Y Girpa+GYp++Pdhtek  +++Ll ae+  G+klt+sla+ P+asvs+l+fa+p + Yf+v
  MMETSP1137-20121227|5970_1   74 QERIMVIDGAMGTTIQQYKFTEEDFRGDkFTDCpdTQELKGNNDLLVFTQPDTIREIHRRYFMAGADICETNTFSGTVIAQADYGMEHIVYELNKIACELAVDAA-------------AGAIGPTNRTLSISPSVEDPGFRNCTWDEVVSAYKTQVKGLIDGGAHIILVETIFDTLNAKAALFAIDEYYEESGCpRLPIMISGTIVDMSGRTLSGQTTEAFYVSMQHAKPICIGLNCALGADQMLPFMQALSNVAECFVHSYPNAGLPNAMGGYDETPESFAASVKLFCDNNLVNALGGCCGTTPEHIAAVNDMLKNstFKPRVRPDPCTEMRISGLEPLTVNKGLGFLNIGERCNIAGSAKFKRLILEGHYDQALEIARAQAENGAQVIDVNMDEGLLDGEYAITKFLNMLIPEPDISKLPICVDSSKFHIVEAGLKCCQGKCIVNSISLKEGEEDFVKKAKIVKRYGAAVVVMAFDEEGQAAGYEDKIRICKRAYDILVGpKVEFPPWDIIFDPNILTIATGLAEHNNYGKDFIQATNWITSNLPGAKISGGVSNLSFGFRGLTALREAIHAVFLYHAIQNGMTMGIVNAGAMPIYEDIEQPMRDYIEQVVLNESddGEHVERLLKFAEEEKEKKEQggsSAKVANKLEWREKPVCDRLTHALVKGIAEFVEEDTEEARHLFATNLEVIEGPLMAGMNVVGDLFGAGKMFLPQVIKSARVMKKAVAYLLPFMEAEKKKRaeeraaaglaveeeKGKGVIVMSTVKGDVHDIGKNIVGVVLGCNNYTVVDTGVMCNARDILQACIDNKADILGCSGLITPSLDEMVFVAKEMERTGLKIPLLIGGATTSKMHTAVKVSPNYpSGFAMHVLDASRAVSVCESLLNDKKRAEFIEDVKEQYEELREeDHYASLASRKFLTLEKARQHSLNINWA-DVPIPTPKLLGTKVFEEYpLGELLPFIDWNPFFQVWQLRGKYPnrgypKIFKDEAVGGEAKKLHDDALKLINEIVEKKMLTAKGVVGIWPANSVGDDIEVYSADGS---GAVLGTF----HTLRQQEERedttYYAMSDFIAPKSSGKKDYIGAFAVSTGFGCEEICAKLRKENDDYRGIMMEAVADRLAEAFAELLHYKMRTELWGYAPDEKVDIDDMLKVKYTGIRPAPGYPTQPDHTEKNLMWKLLGAESaAGIKLTDSLAMLPAASVSALVFANPCSTYFQV 1272
                  79**************************98888335799********************************************************9999997664.............8************************************************************************996479**********************************************************************************************************************985569***********************************************************************************************************************************************************************************9769***************************************************************************************************************99334678*******99877776533267888999****************************************************************************************988999*********9999*********************************************************************************************************66789************************************96369999**********************.9****************************************9999999******************************************************7666...4444444....5555555554555************************************************************************************************************************9******************************87 PP

>> TIGR02370  pyl_corrinoid: methyltransferase cognate corrinoid proteins, Methanosarcina family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  100.5   4.6   1.7e-32   1.7e-29       2     179 ..     721     911 ..     720     918 .. 0.87

  Alignments for each domain:
  == domain 1    score: 100.5 bits;  conditional E-value: 1.7e-32
   TIGR02370   2 laeaiveqeeddvvevvqkaldaGidPveliekglaaGmevvgekfeagelfLPqvlmsadameagikvlkaele....kav...........eteklGlvvigvveGdvhdiGksivatlLraaGfdvldlGrdvpieevvekvkkekaellagsaLmtttmlgqkdiedkLkeeglrdrvkvmvGGapvtq 179
                 l++a+v+   + v+e  ++a +     +e+ie  l+aGm+vvg++f+ag++fLPqv+ sa  m++++  l + +e    k++           e++++G++v+ +v GdvhdiGk+iv  +L+ + + v+d G      ++++   ++ka++l+ s L+t ++  +  +  +++  gl+  +++++GGa+ ++
  MMETSP1137-20121227|5970_1 721 LTHALVKGIAEFVEEDTEEARHLFATNLEVIEGPLMAGMNVVGDLFGAGKMFLPQVIKSARVMKKAVAYLLPFMEaekkKRAeeraaaglaveEEKGKGVIVMSTVKGDVHDIGKNIVGVVLGCNNYTVVDTGVMCNARDILQACIDNKADILGCSGLITPSLDEMVFVAKEMERTGLK--IPLLIGGATTSK 911
                 678999999999******************************************************99775544311113221222223333247889********************************************************************************9..********9876 PP

>> TIGR01501  MthylAspMutase: methylaspartate mutase, S subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0       1.5   1.5e+03      38      64 ..     209     235 ..     197     266 .. 0.67
   2 !   24.1   0.4   5.2e-09   5.3e-06       3      92 ..     820     908 ..     818     930 .. 0.88

  Alignments for each domain:
  == domain 1    score: -3.3 bits;  conditional E-value: 1.5
   TIGR01501  38 lsakeefikaaietdadailvsslyGh 64 
                 +sa +  +k  i+ +a  ilv +++  
  MMETSP1137-20121227|5970_1 209 VSAYKTQVKGLIDGGAHIILVETIFDT 235
                 555666677788888888888888764 PP

  == domain 2    score: 24.1 bits;  conditional E-value: 5.2e-09
   TIGR01501   3 tvvlGviGsdahavGnkvldralsnagfrvvnlGvlsakeefikaaietdadailvsslyGhgeidckGlreklaeaGleaillyvGGnl 92 
                  +v+ ++  d+h +G++++  +l  ++++vv+ Gv+++  + ++a i+++ad +  s l   +  +   + ++++ +Gl+  ll +GG  
  MMETSP1137-20121227|5970_1 820 VIVMSTVKGDVHDIGKNIVGVVLGCNNYTVVDTGVMCNARDILQACIDNKADILGCSGLITPSLDEMVFVAKEMERTGLKIPLL-IGGAT 908
                 699**************************************************9999999888888888888888888876666.78765 PP

>> TIGR00640  acid_CoA_mut_C: methylmalonyl-CoA mutase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.5   5.2e-07   0.00053       6      91 ..     822     906 ..     818     918 .. 0.88

  Alignments for each domain:
  == domain 1    score: 17.8 bits;  conditional E-value: 5.2e-07
   TIGR00640   6 lvakmGqdGhdrGakviataladlGfdvdvgglfqtPeeiarqaveedvdvvGvsslaaghltlvPelieeleklGredilvvvGG 91 
                 +++ +  d hd G+ ++   l    + v  +g++   ++i ++++++ +d++G s l +  l  +  + +e+e++G++  l ++GG
  MMETSP1137-20121227|5970_1 822 VMSTVKGDVHDIGKNIVGVVLGCNNYTVVDTGVMCNARDILQACIDNKADILGCSGLITPSLDEMVFVAKEMERTGLKIPL-LIGG 906
                 556666799*****************************************************9999**********98444.4444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1308 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       188  (0.0458313); expected 82.0 (0.02)
Passed bias filter:                      117  (0.0285227); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.91u 0.18s 00:00:01.09 Elapsed: 00:00:01.04
# Mc/sec: 1660.02
//
Query:       MMETSP1137-20121227|5971_1  [L=183]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.2e-48  161.3  12.9    1.7e-38  130.1   2.3    2.0  2  TIGR01116 ATPase-IIA1_Ca: calcium-translocating P-type ATPase, SERCA-type
    1.2e-09   34.4   0.1    1.4e-09   34.1   0.1    1.0  1  TIGR01522 ATPase-IIA2_Ca: calcium-transporting P-type ATPase, PMR1-type
     0.0033   13.4   0.7     0.0042   13.1   0.5    1.0  1  TIGR01517 ATPase-IIB_Ca: calcium-translocating P-type ATPase, PMCA-type


Domain annotation for each model (and alignments):
>> TIGR01116  ATPase-IIA1_Ca: calcium-translocating P-type ATPase, SERCA-type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.9   1.5   1.9e-13   2.6e-10     669     702 ..       1      34 [.       1      38 [. 0.96
   2 !  130.1   2.3   1.2e-41   1.7e-38     703     792 ..      94     183 .]      91     183 .] 0.98

  Alignments for each domain:
  == domain 1    score: 36.9 bits;  conditional E-value: 1.9e-13
   TIGR01116 669 rkedeplitgwlflrylviGvyvGlatvaaliwy 702
                 r+ d+ lit+w+f+ry+v+G+yvG+atv ++++y
  MMETSP1137-20121227|5971_1   1 RRADDQLITPWVFFRYMVVGLYVGFATVGVFAYY 34 
                 899******************************9 PP

  == domain 2    score: 130.1 bits;  conditional E-value: 1.2e-41
   TIGR01116 703 kqkastlslsvlvviemlnalnalsedssllkippwenkwlvaaiasslalhllilyvpllsalfgvvplslteWllvlkvslPvilvde 792
                 k++astlslsvlv+iem+nalnalsed+sll++ppw+n+wl++a+ +s++lh++ilyvp+l+++f ++pls ++W+lvl  s Pvi++de
  MMETSP1137-20121227|5971_1  94 KRTASTLSLSVLVTIEMFNALNALSEDGSLLQMPPWANPWLLLAMLVSFSLHFVILYVPFLAQVFSITPLSYNDWILVLAFSFPVIIIDE 183
                 67899************************************************************************************8 PP

>> TIGR01522  ATPase-IIA2_Ca: calcium-transporting P-type ATPase, PMR1-type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.1   0.1   1.1e-12   1.4e-09     757     844 ..      96     183 .]      87     183 .] 0.94

  Alignments for each domain:
  == domain 1    score: 34.1 bits;  conditional E-value: 1.1e-12
   TIGR01522 757 rdttmtftcfvffdmfnalacrsetksvfeiGlfsnkmflyavgasllGqllvvyvpflqkvfqtealsikdllllllisssvlivde 844
                   +t++++ +v  +mfnal + se  s++++   +n  +l+a++ s+    +++yvpfl +vf    ls +d +l+l+ s  v+i+de
  MMETSP1137-20121227|5971_1  96 TASTLSLSVLVTIEMFNALNALSEDGSLLQMPPWANPWLLLAMLVSFSLHFVILYVPFLAQVFSITPLSYNDWILVLAFSFPVIIIDE 183
                 35799999******************************************************************************98 PP

>> TIGR01517  ATPase-IIB_Ca: calcium-translocating P-type ATPase, PMCA-type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.1   0.5   3.1e-06    0.0042     792     870 ..      99     179 ..      89     182 .. 0.76

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 3.1e-06
   TIGR01517 792 tivfntfvllqlfnelnaRkleelnvfeglfknaifv.a.ivlitlavqviivefgGaalsvvslsieqWllcvllgalsl 870
                 t+   + v + +fn lna   +   +    + n   + a +v + l + ++ v f+ +++s+++ls + W+l ++ ++  +
  MMETSP1137-20121227|5971_1  99 TLSLSVLVTIEMFNALNALSEDGSLLQMPPWANPWLLlAmLVSFSLHFVILYVPFLAQVFSITPLSYNDWILVLAFSFPVI 179
                 6777889999999999998776666655566665444041455677789999********************999987655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (183 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       101  (0.0246221); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.18u 0.15s 00:00:00.32 Elapsed: 00:00:00.38
# Mc/sec: 635.63
//
Query:       MMETSP1137-20121227|5972_1  [L=223]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.016   13.5   0.0       0.51    8.7   0.0    2.3  2  TIGR01841 phasin: phasin family protein


Domain annotation for each model (and alignments):
>> TIGR01841  phasin: phasin family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.0      0.01        41      14      43 ..      76     105 ..      64     111 .. 0.85
   2 ?    8.7   0.0   0.00013      0.51      32      74 ..     110     152 ..     107     156 .. 0.91

  Alignments for each domain:
  == domain 1    score: 2.6 bits;  conditional E-value: 0.01
   TIGR01841  14 qalragldesveaskrlasagdpqellalq 43 
                  a++++++  ++++kr  +++++ el+ + 
  MMETSP1137-20121227|5972_1  76 VATASSIEQGADHVKRWSTPTTAGELVHHE 105
                 5788999999***************99875 PP

  == domain 2    score: 8.7 bits;  conditional E-value: 0.00013
   TIGR01841  32 sagdpqellalqtefakpaaeklleysrelyEiaaktqaealk 74 
                  + d+ el+ +  + ++p  ++l  ++ +++++ +k+q+++ +
  MMETSP1137-20121227|5972_1 110 NPDDAGELVHHELRTVQPRMQQLHRENMNFVDLHNKLQQGVCA 152
                 57899*********************************99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (223 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        95  (0.0231594); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.20u 0.16s 00:00:00.36 Elapsed: 00:00:00.64
# Mc/sec: 459.90
//
Query:       MMETSP1137-20121227|5973_1  [L=450]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      7e-18   62.4   0.9    6.2e-13   46.1   0.0    2.1  2  TIGR01733 AA-adenyl-dom: amino acid adenylation domain
    2.1e-11   40.9   0.0      1e-06   25.4   0.0    2.1  2  TIGR01734 D-ala-DACP-lig: D-alanine--poly(phosphoribitol) ligase, subunit 1
    4.8e-11   39.6   0.2    1.5e-05   21.5   0.0    3.1  2  TIGR03098 ligase_PEP_1: acyl-CoA ligase (AMP-forming), exosortase A-associated
    8.4e-11   39.2   0.0    6.7e-08   29.6   0.0    2.1  2  TIGR01923 menE: O-succinylbenzoate-CoA ligase
    1.2e-07   28.4   0.2     0.0022   14.3   0.0    2.9  3  TIGR03205 pimA: dicarboxylate--CoA ligase PimA
    1.5e-07   28.4   0.2    0.00024   17.8   0.0    2.8  3  TIGR03208 cyc_hxne_CoA_lg: cyclohexanecarboxylate-CoA ligase
    6.3e-06   23.0   0.1    0.00033   17.3   0.0    2.2  2  TIGR02262 benz_CoA_lig: benzoate-CoA ligase family
      3e-05   20.3   0.1    8.7e-05   18.8   0.1    1.6  2  TIGR02275 DHB_AMP_lig: (2,3-dihydroxybenzoyl)adenylate synthase
    9.2e-05   17.8   0.2      0.053    8.6   0.1    2.0  2  TIGR03443 alpha_am_amid: L-aminoadipate-semialdehyde dehydrogenase
    0.00053   16.2   0.0     0.0079   12.3   0.0    2.0  2  TIGR02188 Ac_CoA_lig_AcsA: acetate--CoA ligase
     0.0077   12.7   0.0      0.012   12.0   0.0    1.2  1  TIGR02316 propion_prpE: propionate--CoA ligase


Domain annotation for each model (and alignments):
>> TIGR01733  AA-adenyl-dom: amino acid adenylation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.1   0.0   1.7e-15   6.2e-13       6     162 ..      29     191 ..      24     262 .. 0.77
   2 !   15.2   0.1   4.1e-06    0.0015     311     346 ..     379     414 ..     348     432 .. 0.79

  Alignments for each domain:
  == domain 1    score: 46.1 bits;  conditional E-value: 1.7e-15
   TIGR01733   6 deranrlAraLkeaggvrpgdrVavll.ersvelvvailavlkaGaayvpldpey.PaeRlaailedakakllltdeelaeelaeval....eailleeleekaaedasaeeaaeak.....skpddlayviyTSGStGkPKgVlvehrslvnllaslarryelseed 162
                  + a+r Ar L++ag +r gd+   ++ + ++  vv  la + aG + v ++ ++  +eR+ + +++++ kl+l+d+++ +++ ++      +++l++   + +++  +++e           +pd +  vi+TSG+tG+PKgV+++ +s +   a ++++ + ++++
  MMETSP1137-20121227|5973_1  29 WTLAQRAARVLRDAG-LRFGDCQTHYFsDNTLGDVVFRLAAVMAGTVPVTINWQAdTPERVLHKVTVTGSKLVLMDKDTPKDVLQLIAkeapHVLLFDVASLSEHAPLPPAE----FcrdlaLTPDATRIVIFTSGTTGNPKGVELSYSSYACNRATFESFLQAGDDK 191
                 5679999*****865.99999866555167799*******************8652789*****************999888877665333233333333333333322222....244567789999**********************998888888877665333 PP

  == domain 2    score: 15.2 bits;  conditional E-value: 4.1e-06
   TIGR01733 311 lrpvpvgvvGELyigGagvarGYlnrpeltaerFve 346
                 + ++++g++G L+ +G  +++GY+ +pe ta+   +
  MMETSP1137-20121227|5973_1 379 MVECAEGEPGQLVTRGGNIMKGYVANPEATAKAIHD 414
                 5689***************************98654 PP

>> TIGR01734  D-ala-DACP-lig: D-alanine--poly(phosphoribitol) ligase, subunit 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.4   0.0   2.8e-09     1e-06      57     166 ..      55     173 ..      17     193 .. 0.70
   2 !   13.4   0.0   1.2e-05    0.0045     338     384 ..     382     426 ..     364     438 .. 0.83

  Alignments for each domain:
  == domain 1    score: 25.4 bits;  conditional E-value: 2.8e-09
   TIGR01734  57 GkqefemlvaflgsiksGhayiPvDtsi.pleriekikeaaepelvievaelsielvete......vitlealeeieeekaeavel..ekavkeddnyyiiytsGstGkPkGvqishdn 166
                  +++   +v  l+++ +G+  + ++ +  + er+ +   ++ ++lv+  ++ + ++ +        v+  +  +  e+   ++ e+  + a+  d +  +i+tsG+tG+PkGv++s+ +
  MMETSP1137-20121227|5973_1  55 SDNTLGDVVFRLAAVMAGTVPVTINWQAdTPERVLHKVTVTGSKLVLMDKDTPKDVLQLIakeaphVLLFDVASLSEHAPLPPAEFcrDLALTPDATRIVIFTSGTTGNPKGVELSYSS 173
                 5555566677788888888777777654145888888888999999999999998876652233333333333333333345555422667889999******************9976 PP

  == domain 2    score: 13.4 bits;  conditional E-value: 1.2e-05
   TIGR01734 338 lsegekGeivivGdsvskGylnnpekteeaffeaegkrayrtGDagt 384
                  +ege G +v  G  + kGy+ npe t++a +  +g +  + GD+++
  MMETSP1137-20121227|5973_1 382 CAEGEPGQLVTRGGNIMKGYVANPEATAKAIH--DGGWYVNLGDVAF 426
                 5799*************************974..5666666777765 PP

>> TIGR03098  ligase_PEP_1: acyl-CoA ligase (AMP-forming), exosortase A-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.5   0.0     4e-08   1.5e-05      33     208 ..      30     194 ..      15     204 .. 0.74
   2 !   14.9   0.0   3.9e-06    0.0015     350     381 ..     381     412 ..     358     445 .. 0.90

  Alignments for each domain:
  == domain 1    score: 21.5 bits;  conditional E-value: 4e-08
   TIGR03098  33 eevkalasglkalglkrgeRvaiyl.ekrletvlalfaaslaggvfvpinPlLkaeqvayilkDcnvkllvtskerldaledalakchdlrtlilvdepekasekkagaevlsweklkaleeaa..akvdvidddlaailYtsGstGrPkgvvlshrnlvaGaksvaqyLelredDrll 208
                   +++ a++l+  gl+ g+  + y  +  l  v+  +aa++ag+v v in     +  + +l+    k+ vt ++ + + +d+  k  d+ +li  ++p+    +     v s+++ + l +a+  +    ++d    +++tsG tG+Pkgv ls +       +  ++L+  +d  l+
  MMETSP1137-20121227|5973_1  30 TLAQRAARVLRDAGLRFGDCQTHYFsDNTLGDVVFRLAAVMAGTVPVTINWQA--DTPERVLH----KVTVTGSKLVLMDKDTP-K--DVLQLIAKEAPHVLLFD-----VASLSEHAPLPPAEfcRDLALTPDATRIVIFTSGTTGNPKGVELSYSSYACNRATFESFLQAGDDKSLV 194
                 567889999999******9988876255678999****************754..44444443....67788776665555554.4..57789998888865555.....4466666666666655888899999999*****************998877777777777766665555 PP

  == domain 2    score: 14.9 bits;  conditional E-value: 3.9e-06
   TIGR03098 350 ecapeeeGelvhrGalvakGYWndpektaerf 381
                 eca +e+G lv rG  + kGY  +pe+ta+  
  MMETSP1137-20121227|5973_1 381 ECAEGEPGQLVTRGGNIMKGYVANPEATAKAI 412
                 8****************************876 PP

>> TIGR01923  menE: O-succinylbenzoate-CoA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.6   0.0   1.8e-10   6.7e-08       8     172 ..      31     210 ..      26     238 .. 0.74
   2 !    7.5   0.0   0.00089      0.33     297     340 ..     386     431 ..     367     449 .. 0.83

  Alignments for each domain:
  == domain 1    score: 29.6 bits;  conditional E-value: 1.8e-10
   TIGR01923   8 eaarlAkalkaqsvrkgdvva.llaenslelvllllallllgveiallntrLte.kelttqlkelkvellltdslleeke.dlqaisldeleaeaeaeevs...........lsasfsldkiatlifTSgstGkpKavvqtfrnhyasavgsaeklgftesdnWL..lsLPlyHvsGlsil 172
                  a+r A+ l+  ++r gd  + ++++n l  v++ la++ +g + + +n +  + +++ + +  + ++l+l d+   + + +l a +++++ + +  + +s            +  ++ d++  +ifTSg+tG+pK+v  +++ +  +  +    l++ ++ +    ++ Pl+H    +++
  MMETSP1137-20121227|5973_1  31 LAQRAARVLRDAGLRFGDCQThYFSDNTLGDVVFRLAAVMAGTVPVTINWQADTpERVLHKVTVTGSKLVLMDKDTPKDVlQLIAKEAPHVLLFDV-ASLSehaplppaefcRDLALTPDATRIVIFTSGTTGNPKGVELSYSSYACNRATFESFLQAGDDKSLVpvVVNPLHHTNSTALV 210
                 57899************987637799***********************99655155677888899999999988886554555666666666665.33334556666665567788999**********************998888777777777766665432267799998877766 PP

  == domain 2    score: 7.5 bits;  conditional E-value: 0.00089
   TIGR01923 297 ghgeilvkganlmkgYlek.gelteaveeqGwl.ktgDlgeldgeg 340
                 + g+++ +g n+mkgY  + +   +a+++ Gw+ + gD++ + ++g
  MMETSP1137-20121227|5973_1 386 EPGQLVTRGGNIMKGYVANpEATAKAIHDGGWYvNLGDVAFWLKNG 431
                 66999************9956677889999996478**99997766 PP

>> TIGR03205  pimA: dicarboxylate--CoA ligase PimA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.0     0.047        18      48     124 ..      24     102 ..      10     116 .. 0.81
   2 !   14.3   0.0   5.9e-06    0.0022     187     274 ..     144     228 ..     112     236 .. 0.81
   3 !    9.2   0.0    0.0002     0.074     390     429 ..     384     425 ..     336     449 .. 0.83

  Alignments for each domain:
  == domain 1    score: 1.4 bits;  conditional E-value: 0.047
   TIGR03205  48 tytelealaetaaaallragyg.kdasvalylgntpdhpinffgalkagarvvhls.pldgeralshklsdsgarllit 124
                 +  e+ +la++aa  l  ag    d+    +  nt    +  + a+ ag+  v +    d    + hk++ +g++l++ 
  MMETSP1137-20121227|5973_1  24 SRGEFWTLAQRAARVLRDAGLRfGDCQTHYFSDNTLGDVVFRLAAVMAGTVPVTINwQADTPERVLHKVTVTGSKLVLM 102
                 5556778999***99999*986368999999999999999999******98777762578888888*******998764 PP

  == domain 2    score: 14.3 bits;  conditional E-value: 5.9e-06
   TIGR03205 187 pavkaddvallqytggttglpkgamlthgnltsavsiydvwgkrsraergdvervicvlplfhiyaltvillrslkrgdlislhqrfd 274
                  a+++d   ++ +t gttg pkg  l+++  +   + ++ + +   a  ++    ++v pl h  + +++     k g  + l qr+ 
  MMETSP1137-20121227|5973_1 144 LALTPDATRIVIFTSGTTGNPKGVELSYSSYACNRATFESFLQ---AGDDKSLVPVVVNPLHHTNSTALVDWAMRKPGTHLHLVQRYS 228
                 3799********************************9999876...33333333456889*999999999999999999999999986 PP

  == domain 3    score: 9.2 bits;  conditional E-value: 0.0002
   TIGR03205 390 pgevgelrirgpnvtrgywnraeesaeafvgdrflt..gdig 429
                  ge g+l  rg n+ +gy  ++e +a+a+ ++ +    gd+ 
  MMETSP1137-20121227|5973_1 384 EGEPGQLVTRGGNIMKGYVANPEATAKAIHDGGWYVnlGDVA 425
                 6999************************99876543236665 PP

>> TIGR03208  cyc_hxne_CoA_lg: cyclohexanecarboxylate-CoA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.0      0.22        83     269     299 ..      27      58 ..      11      75 .. 0.78
   2 !   17.8   0.0   6.4e-07   0.00024     181     236 ..     136     190 ..     120     211 .. 0.76
   3 !    6.8   0.0    0.0014      0.51     384     429 ..     381     429 ..     350     434 .. 0.72

  Alignments for each domain:
  == domain 1    score: -0.5 bits;  conditional E-value: 0.22
   TIGR03208 269 diwn.aakaaeliretgvtftmastafltdla 299
                 + w  a +aa+++r+ g+ f  + t +++d +
  MMETSP1137-20121227|5973_1  27 EFWTlAQRAARVLRDAGLRFGDCQTHYFSDNT 58 
                 56763567999999999999999999988854 PP

  == domain 2    score: 17.8 bits;  conditional E-value: 6.4e-07
   TIGR03208 181 pdaaailrgdrlspddvtqliytsgttgepkgvmhtantllsnilayaerlelgeg 236
                 p+ a   r  +l+pd    +i+tsgttg+pkgv  +  +  +n  ++   l+ g+ 
  MMETSP1137-20121227|5973_1 136 PP-AEFCRDLALTPDATRIVIFTSGTTGNPKGVELSYSSYACNRATFESFLQAGDD 190
                 44.566778899*********************99988888888888777776654 PP

  == domain 3    score: 6.8 bits;  conditional E-value: 0.0014
   TIGR03208 384 klsagevgrllvraasnfggylkrphln..avdaegwf.dtgdlaflda 429
                 + ++ge g+l+ r+   + gy+  p+    a+   gw+ + gd+af   
  MMETSP1137-20121227|5973_1 381 ECAEGEPGQLVTRGGNIMKGYVANPEATakAIHDGGWYvNLGDVAFWLK 429
                 4568999******************9761156778998478**998655 PP

>> TIGR02262  benz_CoA_lig: benzoate-CoA ligase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.0   8.9e-07   0.00033      30     186 ..      22     174 ..      14     187 .. 0.76
   2 ?    3.3   0.0     0.016       5.9     350     386 ..     381     418 ..     354     435 .. 0.78

  Alignments for each domain:
  == domain 1    score: 17.3 bits;  conditional E-value: 8.9e-07
   TIGR02262  30 slsygeleaevrrvaaalrrlGvkreervllvlldtvdfpivf.lGairaGivpvalntll.taddyaylledsrarvvlvseel.lpvlkevlaklpdleklvvvgakpagekqlaellateseqekaaatkaddpafwlyssGstGapkGvvhvhsnl 186
                 +ls ge+ + ++r+a +lr  G++  +     + d +   +vf l a+ aG vpv++n +  t +   + ++ + ++ vl+ ++    vl+ ++ + p++    v++ ++ +    ae         +  a ++d +   +++sG+tG pkGv   +s+ 
  MMETSP1137-20121227|5973_1  22 TLSRGEFWTLAQRAARVLRDAGLRFGDCQTHYFSDNTLGDVVFrLAAVMAGTVPVTINWQAdTPERVLHKVTVTGSKLVLMDKDTpKDVLQLIAKEAPHVLLFDVASLSEHAPLPPAE-------FCRDLALTPDATRIVIFTSGTTGNPKGVELSYSSY 174
                 567788888899******************99*9999999998789************764244555555666778888777665256777777777877666666654433333333.......34556778999999**************8877765 PP

  == domain 2    score: 3.3 bits;  conditional E-value: 0.016
   TIGR02262 350 dvadgevGellvsgpssaagywnnreksrat.feGewt 386
                 + a+ge+G+l+  g+   +gy  n+e ++++   G+w 
  MMETSP1137-20121227|5973_1 381 ECAEGEPGQLVTRGGNIMKGYVANPEATAKAiHDGGWY 418
                 5699*********************9988761568884 PP

>> TIGR02275  DHB_AMP_lig: (2,3-dihydroxybenzoyl)adenylate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0      0.58   2.2e+02     230     271 ..      74     117 ..      65     123 .. 0.76
   2 !   18.8   0.1   2.3e-07   8.7e-05     354     418 ..     356     428 ..     353     433 .. 0.75

  Alignments for each domain:
  == domain 1    score: -2.3 bits;  conditional E-value: 0.58
   TIGR02275 230 lPaahnyplssPGal..GvfyaGGcvvlaadpspteafpliekh 271
                 +P++ n+   +P  +   v  +G ++vl  + +p+++++li k+
  MMETSP1137-20121227|5973_1  74 VPVTINWQADTPERVlhKVTVTGSKLVLMDKDTPKDVLQLIAKE 117
                 67777777777754323578899999999999******999987 PP

  == domain 2    score: 18.8 bits;  conditional E-value: 2.3e-07
   TIGR02275 354 GkPispddevrvvdeege.......pvaeGeaGrlltrGPytirGyykaeehnakafdaeGfyit.Gdlvklt 418
                 G+P  p+ e ++v   ++       + aeGe G+l+trG   ++Gy  ++e  aka ++ G+y+  Gd++   
  MMETSP1137-20121227|5973_1 356 GRPHPPYTECKIVKSTERgqagymvECAEGEPGQLVTRGGNIMKGYVANPEATAKAIHDGGWYVNlGDVAFWL 428
                 66777777777766544311222224589**********************************8658887655 PP

>> TIGR03443  alpha_am_amid: L-aminoadipate-semialdehyde dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.1   0.0    0.0004      0.15     412     435 ..     146     169 ..     139     177 .. 0.86
   2 !    8.6   0.1   0.00014     0.053     615     677 ..     381     444 ..     368     447 .. 0.90

  Alignments for each domain:
  == domain 1    score: 7.1 bits;  conditional E-value: 0.0004
   TIGR03443 412 vGPdsnptlsftsGseGiPkGvkG 435
                 + Pd++  + ftsG++G PkGv  
  MMETSP1137-20121227|5973_1 146 LTPDATRIVIFTSGTTGNPKGVEL 169
                 78********************75 PP

  == domain 2    score: 8.6 bits;  conditional E-value: 0.00014
   TIGR03443 615 lcgvGevGeiyvragGlaegylglpelnaekfvk.nwfvekekwkekdkekkkawrefwlgprd 677
                  c+ Ge G++  r g + +gy  +pe++a+      w+v+    +   k+ k++ r+f+   rd
  MMETSP1137-20121227|5973_1 381 ECAEGEPGQLVTRGGNIMKGYVANPEATAKAIHDgGWYVNLGDVAFWLKNGKDGGRDFYWLSRD 444
                 6***************************98876536*******999999999999***998888 PP

>> TIGR02188  Ac_CoA_lig_AcsA: acetate--CoA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.0     0.035        13      87     167 ..      20     102 ..       8     118 .. 0.74
   2 !   12.3   0.0   2.1e-05    0.0079     237     268 ..     147     178 ..     129     192 .. 0.80

  Alignments for each domain:
  == domain 1    score: 1.6 bits;  conditional E-value: 0.035
   TIGR02188  87 srkltYaellrevcrlanvlkelGvkkgdrvaiYlpm.ipeaviamlacaRiGav.hsvvfaGfsaealaeRivdaeaklvit 167
                 s +l+  e+ +   r+a vl+++G++ gd  + Y+   +   v++ la++  G+v  ++ +   ++e + ++++ + +klv+ 
  MMETSP1137-20121227|5973_1  20 STTLSRGEFWTLAQRAARVLRDAGLRFGDCQTHYFSDnTLGDVVFRLAAVMAGTVpVTINWQADTPERVLHKVTVTGSKLVLM 102
                 66777888888999***************999998751455666677777777762345567777777777777777777765 PP

  == domain 2    score: 12.3 bits;  conditional E-value: 2.1e-05
   TIGR02188 237 dsedplfiLYtsGstGkPkGvlhttgGyllla 268
                   +    +++tsG+tG+PkGv  + + y+   
  MMETSP1137-20121227|5973_1 147 TPDATRIVIFTSGTTGNPKGVELSYSSYACNR 178
                 556667899************99999998654 PP

>> TIGR02316  propion_prpE: propionate--CoA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.0   0.0   3.3e-05     0.012     233     263 ..     150     180 ..     137     190 .. 0.87

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 3.3e-05
   TIGR02316 233 epsyilytsgttgkpkgvqrdvggyavalaa 263
                  + ++++tsgttg pkgv+     ya   a+
  MMETSP1137-20121227|5973_1 150 ATRIVIFTSGTTGNPKGVELSYSSYACNRAT 180
                 567899*******************998776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (450 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        89  (0.0216967); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                        11  (0.00268162); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.50u 0.17s 00:00:00.67 Elapsed: 00:00:00.93
# Mc/sec: 638.66
//
Query:       MMETSP1137-20121227|5974_1  [L=297]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.8e-08   29.0   1.3    1.1e-07   28.4   0.9    1.2  1  TIGR00992 3a0901s03IAP75: chloroplast envelope protein translocase, IAP75 family
     0.0011   15.3   0.0     0.0014   14.8   0.0    1.1  1  TIGR03303 OM_YaeT: outer membrane protein assembly complex, YaeT protein


Domain annotation for each model (and alignments):
>> TIGR00992  3a0901s03IAP75: chloroplast envelope protein translocase, IAP75 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.4   0.9   5.2e-11   1.1e-07     607     688 ..     184     274 ..     171     293 .. 0.74

  Alignments for each domain:
  == domain 1    score: 28.4 bits;  conditional E-value: 5.2e-11
   TIGR00992 607 GdlPsydafilGGsysvrGyneGelGaarnilevtaeiriPi...kaav....valfveyGsdlGss..kdvkGnPaivyrrtGqGssyGl 688
                  d P y++  lGG  s+rGy+ GelG++ + +  t e+r+P     ++      a+f++ G    ++  ++  G P++     G G+ yG 
  MMETSP1137-20121227|5974_1 184 RDGPRYESEYLGGDGSIRGYEIGELGSGPQTVLGTVELRLPAppsNGTAppvaFAIFADAGVRTTARngEQETGTPCVSGASCGYGVHYGP 274
                 588*************************************973223333321246789999776654114567999998888899999883 PP

>> TIGR03303  OM_YaeT: outer membrane protein assembly complex, YaeT protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0     7e-07    0.0014     609     719 ..     185     280 ..     165     286 .. 0.79

  Alignments for each domain:
  == domain 1    score: 14.8 bits;  conditional E-value: 7e-07
   TIGR03303 609 elpfyerfyaggigsvRGFesnsigPrdkaesgdsiGGnakavasvelifPlpfl.keenklrlslFvDagnvwdteqkkeekysdsselraSvGvglrwisPigpLrlsla 719
                 + p ye  y+gg gs+RG+e +++g   +            + ++vel++P p     +  + +++F+Dag   +   + e+++ ++    aS G g+ +    gp+r+++a
  MMETSP1137-20121227|5974_1 185 DGPRYESEYLGGDGSIRGYEIGELGSGPQ-----------TVLGTVELRLPAPPSnGTAPPVAFAIFADAGVRTTA-RNGEQETGTPCVSGASCGYGVHY----GPIRVDIA 280
                 567889999**********9888887654...........48889*******998555666**********88655.55558888888889999998875....66666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (297 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        58  (0.0141394); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.24u 0.12s 00:00:00.36 Elapsed: 00:00:00.36
# Mc/sec: 1088.91
//
Query:       MMETSP1137-20121227|5975_1  [L=231]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (231 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        81  (0.0197465); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.16s 00:00:00.38 Elapsed: 00:00:00.59
# Mc/sec: 516.77
//
Query:       MMETSP1137-20121227|5976_1  [L=337]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (337 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       132  (0.0321794); expected 82.0 (0.02)
Passed bias filter:                      119  (0.0290102); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.14s 00:00:00.42 Elapsed: 00:00:00.61
# Mc/sec: 729.19
//
Query:       MMETSP1137-20121227|5977_1  [L=290]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (290 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       158  (0.0385178); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.17s 00:00:00.41 Elapsed: 00:00:00.47
# Mc/sec: 814.40
//
Query:       MMETSP1137-20121227|5978_1  [L=107]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (107 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        41  (0.00999512); expected 82.0 (0.02)
Passed bias filter:                       39  (0.00950756); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.15s 00:00:00.29 Elapsed: 00:00:00.27
# Mc/sec: 523.07
//
Query:       MMETSP1137-20121227|5979_1  [L=463]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (463 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        79  (0.0192589); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.12s 00:00:00.43 Elapsed: 00:00:00.45
# Mc/sec: 1358.02
//
Query:       MMETSP1137-20121227|5980_1  [L=305]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (305 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       101  (0.0246221); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.16s 00:00:00.42 Elapsed: 00:00:00.34
# Mc/sec: 1184.02
//
Query:       MMETSP1137-20121227|5981_1  [L=62]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (62 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        31  (0.00755729); expected 82.0 (0.02)
Passed bias filter:                       28  (0.00682594); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.15s 00:00:00.26 Elapsed: 00:00:00.28
# Mc/sec: 292.26
//
Query:       MMETSP1137-20121227|5984_1  [L=513]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        6.2    2.1  16.9        7.9    1.8  11.7    1.1  1  TIGR00927 2A1904: K+-dependent Na+/Ca+ exchanger


Domain annotation for each model (and alignments):
>> TIGR00927  2A1904: K+-dependent Na+/Ca+ exchanger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8  11.7    0.0019       7.9     897     970 ..     433     504 ..     372     513 .] 0.40

  Alignments for each domain:
  == domain 1    score: 1.8 bits;  conditional E-value: 0.0019
   TIGR00927 897 eaeedgevkGdegeeqkveaeeeeeedekdegeedeeeiaddeevkdetgeqelnaenqgeakedekGvdgegg 970
                 +   d+ +k  +g   k  ++e++e+ ek+e++ +++e ++++e k++++e+e +ae ++ea + ++ +d++gg
  MMETSP1137-20121227|5984_1 433 NPSADSTMKASDG--AKKGKKEKKEKAEKVEEKVEKKENHEKKEKKEKKKEKESKAEVEEEAPKKKRKADDDGG 504
                 2223333333333..11122222223333333333333333333333334444444444444333333333332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (513 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       576  (0.140419); expected 82.0 (0.02)
Passed bias filter:                      138  (0.0336421); expected 82.0 (0.02)
Passed Vit filter:                        24  (0.0058508); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.16s 00:00:00.63 Elapsed: 00:00:00.49
# Mc/sec: 1381.85
//
Query:       MMETSP1137-20121227|5985_1  [L=192]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (192 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       119  (0.0290102); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.15s 00:00:00.31 Elapsed: 00:00:00.28
# Mc/sec: 873.86
//
Query:       MMETSP1137-20121227|5986_1  [L=286]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.2e-43  145.5   0.0    5.2e-43  145.3   0.0    1.1  1  TIGR01814 kynureninase: kynureninase


Domain annotation for each model (and alignments):
>> TIGR01814  kynureninase: kynureninase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  145.3   0.0   1.3e-46   5.2e-43       3     188 ..      97     284 ..      95     286 .] 0.94

  Alignments for each domain:
  == domain 1    score: 145.3 bits;  conditional E-value: 1.3e-46
   TIGR01814   3 aldaadelkalRdeFalpkakdeneviyl.dNSLalmpkaakealkeeldkWakllveshevgkapWleldealeklla..lvakek..evvvmnsltvNlhkllasfykptekRakIlleakaFPsDlyaiesqlklk.leveeslvqvepreeetlrledildviekeqdeiAlvllsgvqYkt.qlfdla 188
                  +d  d+l+++R eFalp ++d  e +yl + SL+lmp ++ + + +el kWa+  v +h++g+ pW++++e+l++l+a  ++ak+   ev++mnsltvNlh+     y+pt+ Ra Il+ea aFPsD+ya++sq+  +  ++e  + +v+pre++ l++edi+ +i+++  ++Alvll gv+Y t q++d+a
  MMETSP1137-20121227|5986_1  97 LMDLTDPLRRFRREFALPMHSDGTEQVYLtGHSLGLMPLSTFTGVLAELAKWAAKGVGGHFTGELPWAQCEEKLTDLMAevVGAKDPalEVAAMNSLTVNLHN-----YRPTKGRAGILIEAGAFPSDRYAARSQILHHgFDPEIFFFEVQPREDGLLHEEDIKRAIDANRSKLALVLLGGVNYLTgQVLDMA 284
                 699***************99988888887468**********************************************996667642559************7.....***********************************************************************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (286 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        96  (0.0234032); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.25u 0.19s 00:00:00.44 Elapsed: 00:00:00.32
# Mc/sec: 1179.65
//
Query:       MMETSP1137-20121227|5987_1  [L=682]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   3.4e-136  452.2   0.0   4.5e-136  451.8   0.0    1.1  1  TIGR00583 mre11: DNA repair protein (mre11)
    1.6e-07   29.2   1.7      7e-07   27.1   0.1    2.5  3  TIGR00619 sbcd: exonuclease SbcCD, D subunit
      4e-05   20.9   0.4    0.00046   17.5   0.0    2.2  2  TIGR04123 P_estr_lig_assc: metallophosphoesterase, DNA ligase-associated
  ------ inclusion threshold ------
      0.035   12.0   0.5        3.6    5.5   0.0    3.2  2  TIGR00040 yfcE: phosphodiesterase, MJ0936 family


Domain annotation for each model (and alignments):
>> TIGR00583  mre11: DNA repair protein (mre11)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  451.8   0.0  4.4e-139  4.5e-136       1     404 [.      24     426 ..      24     427 .. 0.94

  Alignments for each domain:
  == domain 1    score: 451.8 bits;  conditional E-value: 4.4e-139
   TIGR00583   1 edtirilvstdnhvGygekdpvrkddsvktfeevlqiakeqdvdmvllgGdlfhenkPsrkslyqvlrslrkaclgdkPielellsdasevfeesaftnvnyedpnlnvaiPvfsihGnhddasGdgrlsaldllqatGlvnyfGkvseadeikvsPillqkGetklalyGlsavrderlvrtfkdnkvkflrPnlkkedwfnllvlhqnh.......aahtstsflpesllpdfldlviwGheheclidpvynps.....kgfevlqPGssvatslvpeealpkhvfilnikGrkfklekiplktvrpfvmkeivldevkslrpllktenkkevskrliekveekieeanaeakakraddevdeeeepplPlirlkvdytadwldyqvenpkrfsnrfvgrvanandvvqfkkkk 404
                 +dt+rilv++d h Gy+e dpvr+dds+ +feev+ +a++ + dmvll+Gd+fh+nkPsr+++ ++l+ +r +clgd+ +++e++sd+ ++f++ ++  vnyedpn nv +Pvf+ihGnhdd++Gdg l++ldll  + lvnyfG+  ++++i++sPill+kG t+lalyGl+ vrderl r+f   +vk  +P+   + wfn+l++hqn+       a      ++ e  lp  +dlviwGhehec i +  n+      ++f+v+qPGs+vatslv++ea+pkhv++l+++ ++ kl+ +pl +vrpf ++++ l+  +    l         ++ +++ +ee+  e ++e  a++ ++e   + +  lPlirl+vdyt+    + + np++f++rfv++van  +++ f++k 
  MMETSP1137-20121227|5987_1  24 ADTLRILVASDLHLGYAESDPVRRDDSFIAFEEVFVLANQMKADMVLLAGDIFHDNKPSRRAMQRALEVMRDHCLGDREVQIEVVSDPNTNFHN-KYKTVNYEDPNYNVQLPVFAIHGNHDDPAGDGGLAPLDLLSSANLVNYFGRARDIENIVLSPILLKKGATRLALYGLGHVRDERLSRCFERKTVKVAKPQ-DSGSWFNILAVHQNRhvrgvmgAQGIXKGYIKEAQLPSCMDLVIWGHEHECQIGSGMNALqgsseNQFTVIQPGSTVATSLVEGEAKPKHVALLQVHREQWKLDALPLASVRPFAIRDVCLEAQPDDTDLS-------SEEAMMDFLEEQAIELIEELAARQVSAEESADGRTTLPLIRLRVDYTG----FSTCNPQKFGQRFVSKVANPGEILLFQRKA 426
                 59*******************************************************************************************9.99*************************************************************************************************7.5799**********988886544445569************************99999876777799******************************************************9988776655.......4556788888888888888888888889999999**************....89**********************999886 PP

>> TIGR00619  sbcd: exonuclease SbcCD, D subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.1   0.1   6.8e-10     7e-07       1      61 [.      27      87 ..      27     108 .. 0.92
   2 ?    0.0   0.0      0.13   1.3e+02      76      88 ..     133     145 ..     123     163 .. 0.83
   3 ?   -2.4   0.0      0.69   7.1e+02     141     179 ..     350     388 ..     330     390 .. 0.78

  Alignments for each domain:
  == domain 1    score: 27.1 bits;  conditional E-value: 6.8e-10
   TIGR00619  1 lriLHtsDwHlGktleevSrlaeqkafLddlleilkaeqvDallvAGDvFDkanPpaeaqe 61
                lriL  sD+HlG   +   r  +   + +++  ++ + ++D++l+AGD+F + +P+  a +
  MMETSP1137-20121227|5987_1 27 LRILVASDLHLGYAESDPVRRDDSFIAFEEVFVLANQMKADMVLLAGDIFHDNKPSRRAMQ 87
                79***************99999999999***************************988755 PP

  == domain 2    score: 0.0 bits;  conditional E-value: 0.13
   TIGR00619  76 lpivvisGNHDsa 88 
                 lp+  i GNHD +
  MMETSP1137-20121227|5987_1 133 LPVFAIHGNHDDP 145
                 78999******86 PP

  == domain 3    score: -2.4 bits;  conditional E-value: 0.69
   TIGR00619 141 traeedglelelleellekklrqaleellerldkdlpkI 179
                  +a  d le++++e + e + rq  +e+++  +++lp I
  MMETSP1137-20121227|5987_1 350 EEAMMDFLEEQAIELIEELAARQVSAEESADGRTTLPLI 388
                 456678888889999999999999999999999999988 PP

>> TIGR04123  P_estr_lig_assc: metallophosphoesterase, DNA ligase-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.0   4.5e-07   0.00046      21      96 ..      27      97 ..      14     110 .. 0.88
   2 ?    1.1   0.0     0.048        49      98     110 ..     132     144 ..     112     160 .. 0.82

  Alignments for each domain:
  == domain 1    score: 17.5 bits;  conditional E-value: 4.5e-07
   TIGR04123 21 erlLvvaDlHlgKaaafrkrGialPpkdteatLerLealieelqpeelivlGDlfhdreaaerlelealaelrela 96
                 r+Lv +DlHlg a+     + ++ ++d+   +e++  l ++++++ +++ GD+fhd++ + r+ + al+ +r+++
  MMETSP1137-20121227|5987_1 27 LRILVASDLHLGYAE-----SDPVRRDDSFIAFEEVFVLANQMKADMVLLAGDIFHDNKPSRRAMQRALEVMRDHC 97
                5899********765.....68999999999*******************************99999999888775 PP

  == domain 2    score: 1.1 bits;  conditional E-value: 0.048
   TIGR04123  98 glevvlveGNHDr 110
                 +l v+ ++GNHD 
  MMETSP1137-20121227|5987_1 132 QLPVFAIHGNHDD 144
                 567889******5 PP

>> TIGR00040  yfcE: phosphodiesterase, MJ0936 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.1     0.023        23      15      40 ..      53      92 ..      27     165 .. 0.58
   2 ?    5.5   0.0    0.0036       3.6     106     120 ..     256     270 ..     220     299 .. 0.80

  Alignments for each domain:
  == domain 1    score: 2.9 bits;  conditional E-value: 0.023
   TIGR00040 15 atelpvellkklsevdlvvhaGdlt...............s 40
                a+e++  l +++ ++d+v+ aGd+                 
  MMETSP1137-20121227|5987_1 53 AFEEVFVLANQM-KADMVLLAGDIFhdnkpsrramqraleV 92
                555566666666.7788888887765555544444444440 PP

  == domain 2    score: 5.5 bits;  conditional E-value: 0.0036
   TIGR00040 106 dvDvlifGHtHepva 120
                  +D++i+GH He ++
  MMETSP1137-20121227|5987_1 256 CMDLVIWGHEHECQI 270
                 47*********9776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (682 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        94  (0.0229157); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.45u 0.16s 00:00:00.61 Elapsed: 00:00:00.44
# Mc/sec: 2045.83
//
Query:       MMETSP1137-20121227|5988_1  [L=244]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00055   15.5   1.0    0.00068   15.2   0.7    1.1  1  TIGR00927 2A1904: K+-dependent Na+/Ca+ exchanger


Domain annotation for each model (and alignments):
>> TIGR00927  2A1904: K+-dependent Na+/Ca+ exchanger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.7   1.6e-07   0.00068     970    1031 ..       5      65 ..       1      79 [. 0.73

  Alignments for each domain:
  == domain 1    score: 15.2 bits;  conditional E-value: 1.6e-07
   TIGR00927  970 gsdGGdseeeeeeeeeeeeeeeeeeeeeeeeeeneeplslewpetrqkqaiylfllpivfpl 1031
                    d Gd++ ee  ++ee + e + + +e e  e+eep+  +    ++  a +l ll +++ l
  MMETSP1137-20121227|5988_1    5 ADDRGDADGEEAADQEEAKAEVDSDSDEAE-VEEEEPVESDAARRKREHAAFLRLLRMLLAL 65  
                  468899988888888866665555555554.4558999999999999999999999887655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (244 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       138  (0.0336421); expected 82.0 (0.02)
Passed bias filter:                      103  (0.0251097); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.25u 0.17s 00:00:00.42 Elapsed: 00:00:00.38
# Mc/sec: 847.51
//
Query:       MMETSP1137-20121227|5991_1  [L=355]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (355 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        84  (0.0204778); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.17s 00:00:00.44 Elapsed: 00:00:00.34
# Mc/sec: 1378.12
//
Query:       MMETSP1137-20121227|5992_1  [L=84]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (84 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        46  (0.011214); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.16s 00:00:00.31 Elapsed: 00:00:00.26
# Mc/sec: 426.43
//
Query:       MMETSP1137-20121227|5994_1  [L=614]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.049   10.9   0.0      0.081   10.2   0.0    1.2  1  TIGR03724 arch_bud32: Kae1-associated kinase Bud32


Domain annotation for each model (and alignments):
>> TIGR03724  arch_bud32: Kae1-associated kinase Bud32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0     2e-05     0.081      75     138 ..     143     226 ..     128     236 .. 0.77

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 2e-05
   TIGR03724  75 vmeyiegkklkdlleekel................ellkevGelvgklHkagivhgDlttsNiivk....ddklyliDfGLgkk 138
                  m  ++g +l++lle  +                 +l+++++ +v  l k+++v+ D   +N +++    + +++++DfGL+ +
  MMETSP1137-20121227|5994_1 143 AMGLVNGCDLHELLEPARAdpilsdfvgqpcavmlRLMRQMALAVEYLAKHRVVWRDGGLQNWMIQgnasSARMMMVDFGLAVQ 226
                 5666666666666666554556666666666677789***************************975555789********965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (614 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        84  (0.0204778); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.17s 00:00:00.53 Elapsed: 00:00:00.36
# Mc/sec: 2251.15
//
Query:       MMETSP1137-20121227|5996_1  [L=315]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.8e-10   37.6   0.0    5.1e-08   30.6   0.0    2.2  2  TIGR01262 maiA: maleylacetoacetate isomerase


Domain annotation for each model (and alignments):
>> TIGR01262  maiA: maleylacetoacetate isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.6   0.0   1.2e-11   5.1e-08      34      93 ..     106     168 ..      72     174 .. 0.82
   2 !    5.0   0.0   0.00087       3.6     139     169 ..     212     240 ..     198     284 .. 0.86

  Alignments for each domain:
  == domain 1    score: 30.6 bits;  conditional E-value: 1.2e-11
   TIGR01262  34 kdGeqkkeefkalNPqelvPtLkide...gevltqSlAiieyLeetypepaLlpkdpakrarv 93 
                   G+q+++ f ++NP+ ++P++++     ++++ +S Ai+ yL e++pe  Llpk    r+++
  MMETSP1137-20121227|5996_1 106 IGGAQFDSGFVEINPNSKIPAMVDHStdpPTRVFESGAILLYLAEKFPEAGLLPKSGPVRQEA 168
                 4599******************9876666899**********************998888765 PP

  == domain 2    score: 5.0 bits;  conditional E-value: 0.00087
   TIGR01262 139 laalEellkekagafcvGdevtladvcLvpq 169
                 l+ lE+ l++   ++ +Gd  t+ad+ + p 
  MMETSP1137-20121227|5996_1 212 LDVLEKQLAT--HEYIAGDVFTIADIAIWPW 240
                 5566777765..58*************9984 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (315 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        82  (0.0199902); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.27u 0.17s 00:00:00.44 Elapsed: 00:00:00.33
# Mc/sec: 1259.90
//
Query:       MMETSP1137-20121227|5997_1  [L=100]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (100 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        38  (0.00926377); expected 82.0 (0.02)
Passed bias filter:                       34  (0.00828864); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.14s 00:00:00.27 Elapsed: 00:00:00.40
# Mc/sec: 329.97
//
Query:       MMETSP1137-20121227|5999_1  [L=309]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (309 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        61  (0.0148708); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.12s 00:00:00.37 Elapsed: 00:00:00.36
# Mc/sec: 1132.91
//
Query:       MMETSP1137-20121227|6000_1  [L=109]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (109 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        39  (0.00950756); expected 82.0 (0.02)
Passed bias filter:                       39  (0.00950756); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.11s 00:00:00.25 Elapsed: 00:00:00.26
# Mc/sec: 553.34
//
Query:       MMETSP1137-20121227|6001_1  [L=187]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.18    7.9  16.9       0.21    7.7  11.7    1.0  1  TIGR00934 2a38euk: potassium uptake protein, Trk family
        1.6    4.1  11.2        1.9    3.9   7.8    1.1  1  TIGR02102 pullulan_Gpos: pullulanase, extracellular


Domain annotation for each model (and alignments):
>> TIGR00934  2a38euk: potassium uptake protein, Trk family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7  11.7    0.0001      0.21     295     420 ..      27     159 ..      14     186 .. 0.47

  Alignments for each domain:
  == domain 1    score: 7.7 bits;  conditional E-value: 0.0001
   TIGR00934 295 sesrriqekikrrlstssieknsqqnltrlaktksfdd.....skavrlersktidraeasdleeldrakdfq.kmveknvkaakrkkknfkkreanlklfeksryakk.sdrneedngn.kkdasksneseev 420
                 + +  i ekik+r + +  e  + + ++r++k++ +d+     s + r + ++ +d   a+ l++ ++ ++ + +  +k++k++k kk++ k++++++k  ++ + +++ s+++++ ++n   ++s+s  s++ 
  MMETSP1137-20121227|6001_1  27 AGGLTITEKIKQRRAAGGAESWE-EFKERMTKKQQEDNweaimSAQHRETLDRERDARLARALNKDADGPQPKrHKSDKTHKEHKDKKHKHKDSKRKKKKEKHKHKDRDkSKKERSRDRNrDESSSSSCSSDDD 159
                 45678999999999999888874.24445555555554522432222222223333333444444444443330333444555555555555555544444444443330333333333312223333333332 PP

>> TIGR02102  pullulan_Gpos: pullulanase, extracellular
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   7.8   0.00093       1.9    1012    1084 ..      93     165 ..      66     178 .. 0.72

  Alignments for each domain:
  == domain 1    score: 3.9 bits;  conditional E-value: 0.00093
   TIGR02102 1012 ktapkkeeeseadkekkedkdeskdkdkvaeaenkesktpagskkeneeveksskekkeekldkeaklpktae 1084
                  + +++k ++s++++++++dk+++++++k +++++k+ ++  +++k++ + +++ +e  +++ + +++ p +  
  MMETSP1137-20121227|6001_1   93 DGPQPKRHKSDKTHKEHKDKKHKHKDSKRKKKKEKHKHKDRDKSKKERSRDRNRDESSSSSCSSDDDGPTSNM 165 
                  4456677777777777777777777777777777777777777777777777777777777777777776554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (187 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       366  (0.0892248); expected 82.0 (0.02)
Passed bias filter:                      158  (0.0385178); expected 82.0 (0.02)
Passed Vit filter:                        36  (0.00877621); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.31u 0.17s 00:00:00.48 Elapsed: 00:00:00.52
# Mc/sec: 474.65
//
Query:       MMETSP1137-20121227|6002_1  [L=189]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (189 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        58  (0.0141394); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.15s 00:00:00.32 Elapsed: 00:00:00.33
# Mc/sec: 755.94
//
Query:       MMETSP1137-20121227|6003_1  [L=84]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (84 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        53  (0.0129205); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.28
# Mc/sec: 395.97
//
Query:       MMETSP1137-20121227|6004_1  [L=540]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.7e-09   33.9   0.0    2.8e-08   31.0   0.0    2.2  1  TIGR02651 RNase_Z: ribonuclease Z
    1.6e-07   28.6   0.0    0.00023   18.2   0.0    2.3  2  TIGR02650 RNase_Z_T_toga: ribonuclease Z, Thermotoga type
     0.0023   15.2   0.0     0.0047   14.2   0.0    1.4  1  TIGR03413 GSH_gloB: hydroxyacylglutathione hydrolase


Domain annotation for each model (and alignments):
>> TIGR02651  RNase_Z: ribonuclease Z
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.0   0.0     2e-11   2.8e-08      53     290 ..     291     536 ..     278     539 .. 0.79

  Alignments for each domain:
  == domain 1    score: 31.0 bits;  conditional E-value: 2e-11
   TIGR02651  53 dkIfitHlHgDHilGLpGLlstlslqerkepLtiygPkgikefiekllevsktklnyeikvkeieekke....................evleeekfkvealeldH.sveslgYrleekdkpgkldrekakelgipagpllkklkegeeveledgkiikpedvlgeekkgrkvayvgDT..rpleevielaknadlLiheatfae....eekkkAkekgHstakeAaeiakeanvkkliLtHiSaryedee.eeelleeakkifen 290
                 + +++tH H DH+  Lp++  +  +++++ p +i+ P+ ++ ++++ + + +++ln+    +e e+ +                       l ++++ veal++ H ++++l+Y +  k k+  l+ e a+    +  ++ + lke   +el         +++    + r + y+gDT  + le+ ++ + +   ++he +f      + ++ A ++gH++ ++    + +a   + iL+H S ry++e+ e+ ++e++  + en
  MMETSP1137-20121227|6004_1 291 KTVLLTHGHRDHVQALPAMA-RPPFSQSTPPPKILLPAPLEPLVRQ-FLLAESQLNFGKPQTEEENYAAlgqfdllscadgdvvelpkhAYLGRDGLCVEALRATHkDMPALSYGIFRKTKK--LKPEFAA----QRHRIKQLLKESPGIEL--------TEIV----NERLLFYTGDTtiELLEQHAAHILSYKYIVHECSFLGppskKLDQYALQRGHTHYAQLHPYICSAPNTTFILVHWSIRYSREDvEAFFEEQYGGVPEN 536
                 4789**************85.567887788***********99999.5567788888665555555444689************9999877789************78********999665..7777776....33344577888777774........2333....456678*****444699******************8642113446799*********************************99666666666666666 PP

>> TIGR02650  RNase_Z_T_toga: ribonuclease Z, Thermotoga type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.9   0.0   0.00024      0.33      28      56 ..     278     306 ..     258     311 .. 0.78
   2 !   18.2   0.0   1.7e-07   0.00023     127     251 ..     388     520 ..     360     535 .. 0.77

  Alignments for each domain:
  == domain 1    score: 7.9 bits;  conditional E-value: 0.00024
   TIGR02650  28 gvsttlgskvyafkyvflthghvdhiagl 56 
                  + + l +k  + k v+lthgh dh+  l
  MMETSP1137-20121227|6004_1 278 VLDAGLAAKSLSPKTVLLTHGHRDHVQAL 306
                 3445688999999************9887 PP

  == domain 2    score: 18.2 bits;  conditional E-value: 1.7e-07
   TIGR02650 127 qpfrtkhvasevsfgyhifevrrklkkefqgldskviarlvkekgrdfvteeyhkkvltisgds....laldpeevegtellihectfldardrry......knhaaidevmesvkkagvkkvilyhistryirs 251
                 + +r+ h     ++ y if   +klk ef   + + i +l+ke     +te   +++l  +gd+    l      +   + ++hec+fl +  ++       + h+   ++   + +a     il h s ry r+
  MMETSP1137-20121227|6004_1 388 EALRATHKDM-PALSYGIFRKTKKLKPEFAA-QRHRIKQLLKESPGIELTEIVNERLLFYTGDTtielLEQHAAHILSYKYIVHECSFLGPPSKKLdqyalqRGHTHYAQLHPYICSAPNTTFILVHWSIRYSRE 520
                 5556666443.467899************87.56789*******99999**************832223345567889999********9988775111222456677777788888999999999999999875 PP

>> TIGR03413  GSH_gloB: hydroxyacylglutathione hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.0   3.4e-06    0.0047      36      63 ..     282     309 ..     273     315 .. 0.86

  Alignments for each domain:
  == domain 1    score: 14.2 bits;  conditional E-value: 3.4e-06
   TIGR03413  36 aleekglkleaillTHhHaDHvggvael 63 
                  l++k+l+++++llTH H+DHv++  ++
  MMETSP1137-20121227|6004_1 282 GLAAKSLSPKTVLLTHGHRDHVQALPAM 309
                 588999****************998776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (540 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       151  (0.0368113); expected 82.0 (0.02)
Passed bias filter:                      122  (0.0297416); expected 82.0 (0.02)
Passed Vit filter:                        20  (0.00487567); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.43u 0.18s 00:00:00.61 Elapsed: 00:00:00.53
# Mc/sec: 1344.79
//
Query:       MMETSP1137-20121227|6005_1  [L=326]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (326 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       153  (0.0372989); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.17s 00:00:00.44 Elapsed: 00:00:00.28
# Mc/sec: 1536.73
//
Query:       MMETSP1137-20121227|6006_1  [L=344]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (344 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        65  (0.0158459); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.18s 00:00:00.42 Elapsed: 00:00:00.42
# Mc/sec: 1081.05
//
Query:       MMETSP1137-20121227|6009_1  [L=207]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (207 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        60  (0.014627); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.19s 00:00:00.38 Elapsed: 00:00:00.30
# Mc/sec: 910.72
//
Query:       MMETSP1137-20121227|6010_1  [L=98]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (98 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        45  (0.0109703); expected 82.0 (0.02)
Passed bias filter:                       42  (0.0102389); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.56
# Mc/sec: 226.93
//
Query:       MMETSP1137-20121227|6011_1  [L=356]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (356 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        68  (0.0165773); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.10s 00:00:00.35 Elapsed: 00:00:00.48
# Mc/sec: 978.92
//
Query:       MMETSP1137-20121227|6012_1  [L=176]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (176 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        65  (0.0158459); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.11s 00:00:00.28 Elapsed: 00:00:00.66
# Mc/sec: 351.97
//
Query:       MMETSP1137-20121227|6013_1  [L=392]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      0.001   15.9   0.0     0.0017   15.2   0.0    1.2  1  TIGR02037 degP_htrA_DO: peptidase Do
     0.0026   14.7   0.0     0.0097   12.8   0.0    1.7  2  TIGR00225 prc: C-terminal processing peptidase


Domain annotation for each model (and alignments):
>> TIGR02037  degP_htrA_DO: peptidase Do
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0   8.1e-07    0.0017     259     302 ..      48      91 ..      28     106 .. 0.80

  Alignments for each domain:
  == domain 1    score: 15.2 bits;  conditional E-value: 8.1e-07
   TIGR02037 259 kGalvaevlkgspAekaGlkaGDvilkvngkkiksaadlreaig 302
                 +  +v+++l+ ++A++aGl + D++l+vng  ++++a++r+ + 
  MMETSP1137-20121227|6013_1  48 NKLYVQRLLHAGAAAEAGLAVNDLLLEVNGSAVTTSAQVRALLD 91 
                 4568999*****************************99998765 PP

>> TIGR00225  prc: C-terminal processing peptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.8   0.0   4.7e-06    0.0097      52      96 ..      38      82 ..      29      90 .. 0.91
   2 ?   -1.2   0.0     0.089   1.8e+02      36      67 ..     294     325 ..     290     333 .. 0.82

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 4.7e-06
   TIGR00225 52 GiGiqvqmeddeivivsplegsPAekagikpgDkIikvdgksvag 96
                 +G+ +q +++++ +  +l+ + A++ag+ ++D +++v+g+ v++
  MMETSP1137-20121227|6013_1 38 ALGMVLQRRENKLYVQRLLHAGAAAEAGLAVNDLLLEVNGSAVTT 82
                5899************************************98765 PP

  == domain 2    score: -1.2 bits;  conditional E-value: 0.089
   TIGR00225  36 keeakelsettsgeleGiGiqvqmeddeiviv 67 
                 +e+++++s++t++ + G+G  +  ++ +++++
  MMETSP1137-20121227|6013_1 294 REDVRNVSTETELWYGGLGHALVAKNANVSLI 325
                 6789999************9999888877654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (392 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       212  (0.0516821); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.31u 0.15s 00:00:00.46 Elapsed: 00:00:00.56
# Mc/sec: 907.71
//
Query:       MMETSP1137-20121227|6014_1  [L=374]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.032   10.2   0.0      0.047    9.7   0.0    1.2  1  TIGR01407 dinG_rel: putative DnaQ family exonuclease/DinG family helicase


Domain annotation for each model (and alignments):
>> TIGR01407  dinG_rel: putative DnaQ family exonuclease/DinG family helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.0   1.2e-05     0.047      24      95 ..     158     227 ..     138     238 .. 0.86

  Alignments for each domain:
  == domain 1    score: 9.7 bits;  conditional E-value: 1.2e-05
   TIGR01407  24 ivlvedgeivetfatdvnpneeippfIqeLTgisdeqlkqAPeFsqvaqeiydlledgiFVAHNvhFDlnll 95 
                 ++l e++e v  +++ v+p e+i     +  g+   ++k+A  F qv +e+ +ll+  i + H  + D+  l
  MMETSP1137-20121227|6014_1 158 VILNENEELV--YSAYVRPIEKITDYRTAVSGVRPFHMKTAVPFLQVQKEVGQLLRKRIVIGHALRNDFKVL 227
                 3445666666..9***************************************************99998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (374 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       127  (0.0309605); expected 82.0 (0.02)
Passed bias filter:                       99  (0.0241346); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.30u 0.14s 00:00:00.44 Elapsed: 00:00:00.47
# Mc/sec: 1050.30
//
Query:       MMETSP1137-20121227|6015_1  [L=179]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      1e-10   39.5   0.0    1.4e-10   39.0   0.0    1.3  1  TIGR03598 GTPase_YsxC: ribosome biogenesis GTP-binding protein YsxC
    0.00028   17.9   0.0    0.00061   16.7   0.0    1.5  1  TIGR03594 GTPase_EngA: ribosome-associated GTPase EngA
  ------ inclusion threshold ------
      0.019   11.7   0.0      0.019   11.6   0.0    1.2  1  TIGR03918 GTP_HydF: [FeFe] hydrogenase H-cluster maturation GTPase HydF


Domain annotation for each model (and alignments):
>> TIGR03598  GTPase_YsxC: ribosome biogenesis GTP-binding protein YsxC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.0   0.0     1e-13   1.4e-10      86     163 ..       1      78 [.       1     113 [. 0.93

  Alignments for each domain:
  == domain 1    score: 39.0 bits;  conditional E-value: 1e-13
   TIGR03598  86 kwqklieeYLekrenLkgvvllvDirhelkelDlellellkeakipvlvvltKaDklkkselkkalkkvkkelkkeee 163
                 +w++li++Y  +++nL++ ++l+D+ ++l + D+++l++l++ak+pvl vltK+D l+ +el+ + + v+++l+ +e 
  MMETSP1137-20121227|6015_1   1 EWRELITKYALSSTNLRTALVLIDSTRGLCAADKRVLTILARAKVPVLPVLTKTDLLTPEELALSYAVVQRQLDLHEI 78 
                 69********************************************************************99988754 PP

>> TIGR03594  GTPase_EngA: ribosome-associated GTPase EngA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0   4.4e-07   0.00061     260     350 ..      18     120 ..       6     129 .. 0.67

  Alignments for each domain:
  == domain 1    score: 16.7 bits;  conditional E-value: 4.4e-07
   TIGR03594 260 vvllvlDategiseqDlkiaglileegkalvivvNKwDlvkdekele....elkkele.ekl........kflkfapivfiSAltgkgveklleaikevyesls 350
                  +l+++D+t+g+   D+++++++++++ +++ v+ K+Dl+ + +el+     ++++l+ +++        + +   ++ ++SA+  +g+++l++ i+++++++s
  MMETSP1137-20121227|6015_1  18 TALVLIDSTRGLCAADKRVLTILARAKVPVLPVLTKTDLL-TPEELAlsyaVVQRQLDlHEIqmgvdpvdPSIYLRRAAMVSAQFFRGIKDLWQVIDHIVNHVS 120
                 57999**********************************9.333333000033333332111001111113344556778888888888888888888877665 PP

>> TIGR03918  GTP_HydF: [FeFe] hydrogenase H-cluster maturation GTPase HydF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   1.4e-05     0.019      80     133 ..       7      62 ..       1     118 [. 0.82

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 1.4e-05
   TIGR03918  80 trevlektdl..allvvdaeaeleeleeelleelkekkipvivvlnkidlkeeeke 133
                 t+ +l++t+l  al+++d++ +l ++++++l+ l + k+pv+ vl+k+dl + e+ 
  MMETSP1137-20121227|6015_1   7 TKYALSSTNLrtALVLIDSTRGLCAADKRVLTILARAKVPVLPVLTKTDLLTPEEL 62 
                 5556666654338999*********************************9988654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (179 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        98  (0.0238908); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.19u 0.15s 00:00:00.34 Elapsed: 00:00:00.34
# Mc/sec: 694.88
//
Query:       MMETSP1137-20121227|6016_1  [L=366]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (366 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        87  (0.0212092); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.15s 00:00:00.42 Elapsed: 00:00:00.42
# Mc/sec: 1150.19
//
Query:       MMETSP1137-20121227|6017_1  [L=128]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (128 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       103  (0.0251097); expected 82.0 (0.02)
Passed bias filter:                      102  (0.0248659); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.13s 00:00:00.29 Elapsed: 00:00:00.56
# Mc/sec: 296.40
//
Query:       MMETSP1137-20121227|6018_1  [L=69]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (69 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        68  (0.0165773); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.38
# Mc/sec: 239.66
//
Query:       MMETSP1137-20121227|6019_1  [L=91]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (91 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        33  (0.00804486); expected 82.0 (0.02)
Passed bias filter:                       32  (0.00780107); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.12s 00:00:00.26 Elapsed: 00:00:00.26
# Mc/sec: 461.96
//
Query:       MMETSP1137-20121227|6020_1  [L=357]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (357 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        99  (0.0241346); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.17s 00:00:00.45 Elapsed: 00:00:00.40
# Mc/sec: 1178.00
//
Query:       MMETSP1137-20121227|6021_1  [L=251]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.017   13.0   0.0      0.031   12.1   0.0    1.4  1  TIGR03934 TQXA_dom: TQXA domain


Domain annotation for each model (and alignments):
>> TIGR03934  TQXA_dom: TQXA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   7.5e-06     0.031       2      22 ..     217     237 ..     216     243 .. 0.78

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 7.5e-06
   TIGR03934   2 ilwILanGYPnksngglgglt 22 
                 +lw++  +YP+++n++++   
  MMETSP1137-20121227|6021_1 217 VLWVITASYPTQANADQTVAA 237
                 89***********96665544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (251 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       132  (0.0321794); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.22u 0.15s 00:00:00.37 Elapsed: 00:00:00.25
# Mc/sec: 1325.17
//
Query:       MMETSP1137-20121227|6022_1  [L=600]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.9e-10   36.5   0.0    4.5e-10   35.8   0.0    1.2  1  TIGR03903 TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
    0.00033   18.0   0.0    0.00069   17.0   0.0    1.5  1  TIGR03724 arch_bud32: Kae1-associated kinase Bud32


Domain annotation for each model (and alignments):
>> TIGR03903  TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.8   0.0   2.2e-13   4.5e-10      25     195 ..      19     189 ..       5     202 .. 0.78

  Alignments for each domain:
  == domain 1    score: 35.8 bits;  conditional E-value: 2.2e-13
   TIGR03903  25 FrReialCarLshPnivaLlD....sGeaed.gllFavFeyveG..rtlrevLaadGaLpaaetgrL.mlqvLDalaaahdaGvvhRDLkPqnimvsaadveshakvLDFGigaLlpgvedadeatltrttevlGsPaYaaPeqLRgep.vtaksDlYaWGLivleCLtGkrvvqGa.sva 195
                   Re+++ ++L+h  i++L +     G+  d  +l  v ++++   r +      + +  + + +r+ + q   al   h++ + hRDLkP+n++v    ++ + k++DFG + +l   +         +  ++ s  Y aPe L g +  t   D+++ G i+ e L G+   qG+ s++
  MMETSP1137-20121227|6022_1  19 HNRELEMMKQLQHEYIIKLRNffekPGRKRDeTYLHLVMDFMPEtvRSVSMQYHKQRVRFPVDHARVyLYQAFRALEYVHSKSICHRDLKPDNLLVD--PLRLQLKLIDFGCAKVLVRGQP--------NVSYICSRYYRAPELLFGATeYTCSLDMWSMGTILAELLLGHLPFQGQdSTQ 189
                 479***************9752222465554158999****98422444445566777666666665278************************996..577889*******988765554........567999**********9976269999*****************999962444 PP

>> TIGR03724  arch_bud32: Kae1-associated kinase Bud32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.0   3.4e-07   0.00069      94     137 ..      85     130 ..       8     136 .. 0.81

  Alignments for each domain:
  == domain 1    score: 17.0 bits;  conditional E-value: 3.4e-07
   TIGR03724  94 ellkevGelvgklHkagivhgDlttsNiivk..ddklyliDfGLgk 137
                  +l+++ +++  +H++ i+h Dl + N++v+    +l liDfG +k
  MMETSP1137-20121227|6022_1  85 VYLYQAFRALEYVHSKSICHRDLKPDNLLVDplRLQLKLIDFGCAK 130
                 567777789999******************75578899*****987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (600 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       234  (0.0570453); expected 82.0 (0.02)
Passed bias filter:                      165  (0.0402243); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.15s 00:00:00.63 Elapsed: 00:00:00.62
# Mc/sec: 1277.31
//
Query:       MMETSP1137-20121227|6023_1  [L=289]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (289 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        85  (0.0207216); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.17s 00:00:00.40 Elapsed: 00:00:00.36
# Mc/sec: 1059.58
//
Query:       MMETSP1137-20121227|6024_1  [L=201]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.4e-48  163.1   0.0      3e-48  162.8   0.0    1.1  1  TIGR01676 GLDHase: galactonolactone dehydrogenase
    5.7e-23   79.3   0.0    7.7e-23   78.9   0.0    1.2  1  TIGR01678 FAD_lactone_ox: sugar 1,4-lactone oxidases
    8.3e-18   62.3   0.4      1e-17   62.0   0.3    1.1  1  TIGR01679 bact_FAD_ox: FAD-linked oxidoreductase
     0.0018   14.7   0.4     0.0021   14.4   0.3    1.1  1  TIGR01677 pln_FAD_oxido: plant-specific FAD-dependent oxidoreductase


Domain annotation for each model (and alignments):
>> TIGR01676  GLDHase: galactonolactone dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  162.8   0.0   2.9e-51     3e-48      50     208 ..      47     201 .]      37     201 .] 0.96

  Alignments for each domain:
  == domain 1    score: 162.8 bits;  conditional E-value: 2.9e-51
   TIGR01676  50 tvsnwsgthevltrvflqpedleeleqvvktanekkarvrpvgsglspngiglsrlgmvnlalmdkvlevdkekkrvrvqagirvqqlvdaikeygltlqnfasireqqiggivqvgahgtgaklppideqviamklvtpakgtieiskekdpelfyla 208
                  +snws th+   + ++ p+++  ++qv++      +r+r +gs lspng+gls   m+ +al d v++vd  kk+v+vqag   +    +    gltlqn+asi eqqigg +qvgahgtga +pp+deqvi mkl tpa g++e+s e++p+lf la
  MMETSP1137-20121227|6024_1  47 IISNWSATHNASPKEYYSPDSVSAVDQVIQAMHAAGKRIRVIGSALSPNGLGLSDESMLGMALCDEVIHVDVAKKQVTVQAGGGGR----GPAADGLTLQNYASIAEQQIGGFLQVGAHGTGAAVPPVDEQVIRMKLHTPALGALELSLENNPKLFKLA 201
                 68********************************************************************************8765....55667*************************************************************987 PP

>> TIGR01678  FAD_lactone_ox: sugar 1,4-lactone oxidases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.9   0.0   7.5e-26   7.7e-23       2     161 ..      46     201 .]      45     201 .] 0.95

  Alignments for each domain:
  == domain 1    score: 78.9 bits;  conditional E-value: 7.5e-26
   TIGR01678   2 vrfknWakiysakperyfqPksveevrellksareaekklkvvGsGhsPsdivvtdgylvsldklnkvlkfdeekaditveaGirlyqlneildekGyslsnlGsisevsvaGiistgthgsslkhgllssqvvaltivladGellelseerdkdvfkaa 161
                 v  +nW+ ++ a+p+ y+ P sv  v ++++  + a+k+++v+Gs  sP  +   d+ ++ +   + v+++d  k+++tv+aG           + G++l+n  si+e+ + G +  g+hg++     + +qv+ +++ +     lels e+++++fk a
  MMETSP1137-20121227|6024_1  46 VIISNWSATHNASPKEYYSPDSVSAVDQVIQAMHAAGKRIRVIGSALSPNGLGLSDESMLGMALCDEVIHVDVAKKQVTVQAGGG----GRGPAADGLTLQNYASIAEQQIGGFLQVGAHGTGAAVPPVDEQVIRMKLHTPALGALELSLENNPKLFKLA 201
                 5679*******************************************************************************65....4456789*******************************************99988999**********965 PP

>> TIGR01679  bact_FAD_ox: FAD-linked oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.0   0.3     1e-20     1e-17       2     153 ..      49     199 ..      48     201 .] 0.92

  Alignments for each domain:
  == domain 1    score: 62.0 bits;  conditional E-value: 1e-20
   TIGR01679   2 snWsGvqvaePaaivaPkdegeladvvk...vaakpvravGsGhsftdlaktdGtlvsleklegvvdvdqqkdeatvkaGtrlgalgpllaekgrglenlgdidkqsigGalgtathGtGvklqalharvvslrlvtasGkvldlseaddqeifl 153
                 snWs +  a P+   +P + + + +v++    a k++r++Gs  s   l  +d  ++ +   + v+ vd  k+++tv+aG      gp  a  g++l+n + i +q igG l   +hGtG  ++ +  +v  ++l t++   l+ls  +++++f+
  MMETSP1137-20121227|6024_1  49 SNWSATHNASPKEYYSPDSVSAVDQVIQamhAAGKRIRVIGSALSPNGLGLSDESMLGMALCDEVIHVDVAKKQVTVQAGGG--GRGP--AADGLTLQNYASIAEQQIGGFLQVGAHGTGAAVPPVDEQVIRMKLHTPALGALELSLENNPKLFK 199
                 8******************99998887622257788*******************************************984..4455..6789********************************************999999*9999999986 PP

>> TIGR01677  pln_FAD_oxido: plant-specific FAD-dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.3     2e-06    0.0021      84     170 ..     103     183 ..      46     188 .. 0.78

  Alignments for each domain:
  == domain 1    score: 14.4 bits;  conditional E-value: 2e-06
   TIGR01677  84 llistkrlnsvvavdaealtvtvesGvslrelieeaekaGlalpaapyweGlsvGGllstGahGsslwGkGsavhdyvvelrlvvpa 170
                  ++  +  ++v++vd ++++vtv++G   r      ++ Gl+l+         +GG+l  GahG+        v + v+ ++l +pa
  MMETSP1137-20121227|6024_1 103 SMLGMALCDEVIHVDVAKKQVTVQAGGGGRG----PAADGLTLQNYASIAEQQIGGFLQVGAHGTGAA--VPPVDEQVIRMKLHTPA 183
                 456777899******************9996....56779***998889999************8654..467999*******9998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (201 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       177  (0.0431497); expected 82.0 (0.02)
Passed bias filter:                      140  (0.0341297); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.25u 0.18s 00:00:00.43 Elapsed: 00:00:00.40
# Mc/sec: 663.25
//
Query:       MMETSP1137-20121227|6025_1  [L=109]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.1e-06   25.0   0.2      3e-06   24.5   0.1    1.3  1  TIGR01927 menC_gamma/gm+: o-succinylbenzoate synthase
  ------ inclusion threshold ------
      0.017   12.0   0.1      0.029   11.2   0.0    1.4  1  TIGR01928 menC_lowGC/arch: o-succinylbenzoate synthase


Domain annotation for each model (and alignments):
>> TIGR01927  menC_gamma/gm+: o-succinylbenzoate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.5   0.1   1.5e-09     3e-06     233     297 ..       1      64 [.       1      74 [. 0.76

  Alignments for each domain:
  == domain 1    score: 24.5 bits;  conditional E-value: 1.5e-09
   TIGR01927 233 lvlKpaiiGsieklrelvkkaerlGlqAvfSSvfEssialgqlarlAaklspdeaavgltv.allr 297
                 lvlKp+++G+ie    l++ a+      ++ S+fEs +a   +a lAa +  ++ a gl++ + l 
  MMETSP1137-20121227|6025_1   1 LVLKPTLVGGIESAVGLAALAR--HKRLILTSAFESGVAHAHVAMLAAAIGAPHDAHGLSTyDRLA 64 
                 69*********99877765554..2366999****************9998777776665404444 PP

>> TIGR01928  menC_lowGC/arch: o-succinylbenzoate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   1.4e-05     0.029     251     299 ..       1      47 [.       1      61 [. 0.88

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 1.4e-05
   TIGR01928 251 iniKpgRlGGltealkviellkehgakvwiGgmlEtGisralnvalAsl 299
                 +++Kp+ +GG++ a   + l++++  ++++ + +E+G+++a  ++lA+ 
  MMETSP1137-20121227|6025_1   1 LVLKPTLVGGIESAVGLAALARHK--RLILTSAFESGVAHAHVAMLAAA 47 
                 589*****************9965..67899***************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (109 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        94  (0.0229157); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.15u 0.16s 00:00:00.31 Elapsed: 00:00:00.36
# Mc/sec: 399.63
//
Query:       MMETSP1137-20121227|6026_1  [L=372]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (372 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        48  (0.0117016); expected 82.0 (0.02)
Passed bias filter:                       40  (0.00975134); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.13s 00:00:00.39 Elapsed: 00:00:00.49
# Mc/sec: 1002.04
//
Query:       MMETSP1137-20121227|6027_1  [L=235]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (235 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       172  (0.0419308); expected 82.0 (0.02)
Passed bias filter:                      112  (0.0273038); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.15s 00:00:00.36 Elapsed: 00:00:00.35
# Mc/sec: 886.21
//
Query:       MMETSP1137-20121227|6028_1  [L=79]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.053   10.9   1.0      0.055   10.9   0.7    1.1  1  TIGR00403 ndhI: NADH-plastoquinone oxidoreductase, I subunit


Domain annotation for each model (and alignments):
>> TIGR00403  ndhI: NADH-plastoquinone oxidoreductase, I subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.7   1.3e-05     0.055      96     115 ..       6      25 ..       1      48 [. 0.85

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 1.3e-05
   TIGR00403  96 nysidfgvcifcgncveycp 115
                  ys d+gvc +c ++vey  
  MMETSP1137-20121227|6028_1   6 AYSSDLGVCPMCKKVVEYGV 25 
                 7*****************64 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (79 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       104  (0.0253535); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.13u 0.12s 00:00:00.25 Elapsed: 00:00:00.25
# Mc/sec: 417.09
//
Query:       MMETSP1137-20121227|6029_1  [L=118]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (118 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        95  (0.0231594); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.14s 00:00:00.29 Elapsed: 00:00:00.31
# Mc/sec: 502.41
//
Query:       MMETSP1137-20121227|6030_1  [L=339]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.9e-11   40.9   0.0      7e-09   33.5   0.0    2.1  2  TIGR01250 pro_imino_pep_2: proline-specific peptidases
    6.3e-09   33.3   0.0    3.8e-08   30.7   0.0    1.9  2  TIGR03343 biphenyl_bphD: 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase
    6.3e-09   33.4   0.0     0.0001   19.7   0.0    2.3  2  TIGR03695 menH_SHCHC: 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase
    1.9e-08   31.8   0.0    0.00035   17.9   0.0    2.2  2  TIGR02427 protocat_pcaD: 3-oxoadipate enol-lactonase
    7.3e-05   19.9   0.0    0.00013   19.0   0.0    1.3  1  TIGR01249 pro_imino_pep_1: prolyl aminopeptidase
    0.00051   17.0   0.0       0.17    8.7   0.0    2.2  2  TIGR03056 bchO_mg_che_rel: putative magnesium chelatase accessory protein
     0.0011   16.3   0.0     0.0017   15.6   0.0    1.2  1  TIGR03611 RutD: pyrimidine utilization protein D
  ------ inclusion threshold ------
      0.025   12.0   0.1       0.21    9.0   0.0    2.1  2  TIGR01738 bioH: putative pimeloyl-BioC--CoA transferase BioH


Domain annotation for each model (and alignments):
>> TIGR01250  pro_imino_pep_2: proline-specific peptidases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.5   0.0   1.4e-11     7e-09      77     127 ..     105     155 ..      92     176 .. 0.88
   2 !    5.3   0.0    0.0051       2.6     233     287 ..     284     338 ..     278     339 .] 0.92

  Alignments for each domain:
  == domain 1    score: 33.5 bits;  conditional E-value: 1.4e-11
   TIGR01250  77 ltidrfvdEleevrekLaldkfyllgqSwGglLaqeYalkyqqhlkgliis 127
                 l ++ f++ le++re+L+++k++l+++S Gg  a++Ya++++q +  +++ 
  MMETSP1137-20121227|6030_1 105 LSLEFFLQSLEALREALGVEKMFLFAHSTGGFVAAQYAMRFPQRVVRMVLH 155
                 45799***************************************9988876 PP

  == domain 2    score: 5.3 bits;  conditional E-value: 0.0051
   TIGR01250 233 PtLltvgefdemtpeaaremqekiaksrlvvfedgshltmieepeeylkllkdfl 287
                 Pt+++ g+ d +         + +a+ +l+ +    h+ + e p+++ ++++ fl
  MMETSP1137-20121227|6030_1 284 PTIVIYGTKDWVCSPSSLDAPKVLARCELHSISGLHHHLYHESPDQFHEIVARFL 338
                 9*********887777788899******************************998 PP

>> TIGR03343  biphenyl_bphD: 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.7   0.0   7.3e-11   3.8e-08      90     161 ..     113     186 ..     109     196 .. 0.85
   2 ?    0.0   0.0      0.17        86     226     280 ..     285     338 ..     267     339 .] 0.82

  Alignments for each domain:
  == domain 1    score: 30.7 bits;  conditional E-value: 7.3e-11
   TIGR03343  90 avkglmdaldiekahlvgnsmggatalnfaleypdrlgklilmgpgglgksl..laampmegikllfklyaeps 161
                 ++  l +al++ek  l   s gg  a ++a+ +p+r+ +++l g +glg      +   +++ik +f++   p 
  MMETSP1137-20121227|6030_1 113 SLEALREALGVEKMFLFAHSTGGFVAAQYAMRFPQRVVRMVLHGCAGLGAHPtpKTKAEIKKIKPIFRFVFGPL 186
                 6678999******************************************7641145667889999999877665 PP

  == domain 2    score: 0.0 bits;  conditional E-value: 0.17
   TIGR03343 226 tlvtwgrddrfvpldhglklvanlpdaqlhvfsrcghwaqwehadafnrlvidfl 280
                 t+v +g  d +v     l   + l  ++lh +s   h    e  d+f  +v  fl
  MMETSP1137-20121227|6030_1 285 TIVIYGTKD-WVCSPSSLDAPKVLARCELHSISGLHHHLYHESPDQFHEIVARFL 338
                 566666665.4555566777777888999*******************9999998 PP

>> TIGR03695  menH_SHCHC: 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.0     2e-07    0.0001      54     105 ..     108     158 ..      97     171 .. 0.87
   2 !   11.5   0.0   6.1e-05     0.031     182     252 .]     267     339 .]     263     339 .] 0.85

  Alignments for each domain:
  == domain 1    score: 19.7 bits;  conditional E-value: 2e-07
   TIGR03695  54 eeaaqellkelleklkiekviLvGYSlGGRialalaleaperleglilesas 105
                 e  +q  l+ l e+l+ ek++L+  S GG +a ++a+++p+r+ +++l ++ 
  MMETSP1137-20121227|6030_1 108 EFFLQS-LEALREALGVEKMFLFAHSTGGFVAAQYAMRFPQRVVRMVLHGCA 158
                 556666.8999*************************************9984 PP

  == domain 2    score: 11.5 bits;  conditional E-value: 6.1e-05
   TIGR03695 182 gkqpslweklkelkl..pvlylvGekDekFkkiakemqkllpalklevieeaGHnihlenpeafakileefle 252
                 g+qp l e  ++l+l  p++ + G kD   +    +  k l +++l++i+   H +++e p++f +i+ +fl+
  MMETSP1137-20121227|6030_1 267 GRQPILSEPPERLALlpPTIVIYGTKDWVCSPSSLDAPKVLARCELHSISGLHHHLYHESPDQFHEIVARFLK 339
                 667777777766654448888999999999999999999999****************************985 PP

>> TIGR02427  protocat_pcaD: 3-oxoadipate enol-lactonase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.0   6.8e-07   0.00035      60     113 ..     105     158 ..      97     169 .. 0.90
   2 !   11.7   0.0   5.1e-05     0.026     194     251 .]     283     339 .]     274     339 .] 0.91

  Alignments for each domain:
  == domain 1    score: 17.9 bits;  conditional E-value: 6.8e-07
   TIGR02427  60 ysiedladdvlallDalgiekaavcGlSlGGliaqaLaarrpdrvealvlsnta 113
                  s+e + + + al +alg+ek+ ++  S GG +a++ a+r p+rv ++vl   a
  MMETSP1137-20121227|6030_1 105 LSLEFFLQSLEALREALGVEKMFLFAHSTGGFVAAQYAMRFPQRVVRMVLHGCA 158
                 56777889999**************************************98765 PP

  == domain 2    score: 11.7 bits;  conditional E-value: 5.1e-05
   TIGR02427 194 vPtlviaGdeDgstPpelvreiadlvpgarfaeieeaaHlpnleqpeafaallrdflk 251
                  Pt+vi G++D ++ p+++++  + ++  +++ i++  H    e+p++f +++++flk
  MMETSP1137-20121227|6030_1 283 PPTIVIYGTKDWVCSPSSLDA-PKVLARCELHSISGLHHHLYHESPDQFHEIVARFLK 339
                 59***************9986.67899*********999999**************96 PP

>> TIGR01249  pro_imino_pep_1: prolyl aminopeptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.0   2.6e-07   0.00013      83     127 ..     112     156 ..     103     164 .. 0.94

  Alignments for each domain:
  == domain 1    score: 19.0 bits;  conditional E-value: 2.6e-07
   TIGR01249  83 adieklreklkikkWlvfGGsWGstlalayaqkhPekvtklvlrg 127
                 + +e lre+l+++k  +f  s G  +a  ya++ P++v ++vl g
  MMETSP1137-20121227|6030_1 112 QSLEALREALGVEKMFLFAHSTGGFVAAQYAMRFPQRVVRMVLHG 156
                 568****************************************87 PP

>> TIGR03056  bchO_mg_che_rel: putative magnesium chelatase accessory protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.1   0.0     0.002         1      75     123 ..     104     153 ..      97     165 .. 0.82
   2 !    8.7   0.0   0.00033      0.17     220     277 ..     282     338 ..     275     339 .] 0.85

  Alignments for each domain:
  == domain 1    score: 6.1 bits;  conditional E-value: 0.002
   TIGR03056  75 rfslkamaedlakllaaedlsPdaviGhsaGaaialrlaldlpvr.Prav 123
                   sl+   + l +l +a++++   +  hs+G+ +a++ a+  p r  r+v
  MMETSP1137-20121227|6030_1 104 SLSLEFFLQSLEALREALGVEKMFLFAHSTGGFVAAQYAMRFPQRvVRMV 153
                 5688889999****************************999886423555 PP

  == domain 2    score: 8.7 bits;  conditional E-value: 0.00033
   TIGR03056 220 avPvlliageedkavppdvskeaatrlplatlrevpGlGhlvheedadgvaglildav 277
                   P+ +i g +d   +p  s +a + l+ + l+ + Gl h ++ e++d    ++  ++
  MMETSP1137-20121227|6030_1 282 LPPTIVIYGTKDWVCSP-SSLDAPKVLARCELHSISGLHHHLYHESPDQFHEIVARFL 338
                 46999*******98877.5899****************98888888999888887765 PP

>> TIGR03611  RutD: pyrimidine utilization protein D
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   3.3e-06    0.0017      63     110 ..     107     154 ..      94     164 .. 0.87

  Alignments for each domain:
  == domain 1    score: 15.6 bits;  conditional E-value: 3.3e-06
   TIGR03611  63 iaalaadvlelldaldiekahvvGhalGgliglelalrkperlaklvl 110
                 ++ + + + +l +al++ek+ +  h+ Gg+++ + a+r p+r+ ++vl
  MMETSP1137-20121227|6030_1 107 LEFFLQSLEALREALGVEKMFLFAHSTGGFVAAQYAMRFPQRVVRMVL 154
                 5556677888999*******************************9997 PP

>> TIGR01738  bioH: putative pimeloyl-BioC--CoA transferase BioH
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   0.0   0.00042      0.21      68      95 ..     127     154 ..     101     163 .. 0.82
   2 ?    0.5   0.0      0.16        84     188     239 ..     282     332 ..     278     338 .. 0.70

  Alignments for each domain:
  == domain 1    score: 9.0 bits;  conditional E-value: 0.00042
   TIGR01738  68 iwlGWsLGGLvalhlalthpdkvrsLvl 95 
                  +   s GG va++ a+++p++v  +vl
  MMETSP1137-20121227|6030_1 127 FLFAHSTGGFVAAQYAMRFPQRVVRMVL 154
                 456789*****************99987 PP

  == domain 2    score: 0.5 bits;  conditional E-value: 0.16
   TIGR01738 188 svPvLrlyGqkDalvPakvvealdklapqsellvlekaahaPflshaeafaa 239
                  +P++ +yG+kD +  + + +a  k + + el  +++  h  +   +++f +
  MMETSP1137-20121227|6030_1 282 LPPTIVIYGTKDWVCSPSSLDA-PKVLARCELHSISGLHHHLYHESPDQFHE 332
                 5799********9988877654.45555677777777777666666666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (339 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        97  (0.023647); expected 82.0 (0.02)
Passed bias filter:                       96  (0.0234032); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                         8  (0.00195027); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.28u 0.14s 00:00:00.42 Elapsed: 00:00:00.50
# Mc/sec: 894.89
//
Query:       MMETSP1137-20121227|6031_1  [L=388]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (388 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        95  (0.0231594); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.14s 00:00:00.41 Elapsed: 00:00:00.60
# Mc/sec: 853.53
//
Query:       MMETSP1137-20121227|6032_1  [L=304]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0071   13.5   0.0       0.01   13.0   0.0    1.1  1  TIGR02154 PhoB: phosphate regulon transcriptional regulatory protein PhoB


Domain annotation for each model (and alignments):
>> TIGR02154  PhoB: phosphate regulon transcriptional regulatory protein PhoB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   0.0   2.5e-06      0.01       6      75 ..     194     268 ..     191     272 .. 0.82

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 2.5e-06
   TIGR02154   6 lvvedeeairellaynlek.egyevveaedaeealalikee....lPdlilldWmlpgtsGielarrlrkeeetr 75 
                 l+v+d e  r  ++++l+  ++ e++e+e++++al  ++ +     P ++l+   + g+sG+e +r +r  e+ r
  MMETSP1137-20121227|6032_1 194 LLVDDSELSRVRMSVQLNAwAKVEAMETESGDKALHXLTAAemplRPSVVLISVNMAGRSGVETCRAIRAWEHSR 268
                 7899988888888888876478999999******9887654223359**********************988776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (304 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        78  (0.0190151); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.24u 0.15s 00:00:00.39 Elapsed: 00:00:00.30
# Mc/sec: 1337.49
//
Query:       MMETSP1137-20121227|6033_1  [L=219]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (219 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        79  (0.0192589); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.16s 00:00:00.36 Elapsed: 00:00:00.42
# Mc/sec: 688.23
//
Query:       MMETSP1137-20121227|6034_1  [L=461]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (461 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        74  (0.01804); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.17s 00:00:00.48 Elapsed: 00:00:00.39
# Mc/sec: 1560.18
//
Query:       MMETSP1137-20121227|6035_1  [L=786]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.9e-10   37.3   8.9    5.9e-10   37.3   6.2    3.6  4  TIGR00880 2_A_01_02: multidrug resistance protein
    3.2e-07   27.9   6.7    3.2e-07   27.9   4.6    2.1  2  TIGR00710 efflux_Bcr_CflA: drug resistance transporter, Bcr/CflA subfamily
    6.7e-07   26.4  14.3    1.4e-05   22.0   3.0    2.2  2  TIGR00895 2A0115: MFS transporter, aromatic acid:H+ symporter (AAHS) family
    0.00014   18.6   1.7    0.00064   16.4   0.7    2.1  2  TIGR00898 2A0119: cation transport protein
     0.0007   16.5   3.7     0.0007   16.5   2.6    2.3  2  TIGR00881 2A0104: phosphoglycerate transporter family protein
  ------ inclusion threshold ------
      0.025   10.9   1.1      0.052    9.9   0.8    1.4  1  TIGR00894 2A0114euk: Na(+)-dependent inorganic phosphate cotransporter
        1.6    5.4  23.6      0.019   11.7   2.8    2.8  3  TIGR00893 2A0114: D-galactonate transporter


Domain annotation for each model (and alignments):
>> TIGR00880  2_A_01_02: multidrug resistance protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.1       2.5   1.4e+03      88     110 ..      27      49 ..      23      53 .. 0.81
   2 !   37.3   6.2     1e-12   5.9e-10       5     135 ..      65     200 ..      61     209 .. 0.85
   3 ?   -0.2   0.5      0.36   2.1e+02      64     112 ..     484     531 ..     479     539 .. 0.77
   4 ?    1.1   5.9      0.14        82      39     133 ..     578     677 ..     572     684 .. 0.73

  Alignments for each domain:
  == domain 1    score: -2.9 bits;  conditional E-value: 2.5
   TIGR00880  88 algllsagialgpilGpllGavl 110
                 ++g+++a +a  pil+p+  ++l
  MMETSP1137-20121227|6035_1  27 VVGTAVALQADVPILAPMCASLL 49 
                 68889999999999999987765 PP

  == domain 2    score: 37.3 bits;  conditional E-value: 1e-12
   TIGR00880   5 agyAlgqlvvsplsglltdrvGrkpvllvglfifvlsqllfalssnitvliiarilqGfgaaaalvagaaliadiikee...ersvalgllsagialgpilGpllGavla...qalgwralflilallallafilll 135
                 a++ lgq+v +  +g+l+d  Gr+p+l+ g+ +++l++++f l++++   + +r++ G+      va  a +ad++++     r++ +g+l+a+++++  l+ +l+++la      g + ++l++++ a l +++ +
  MMETSP1137-20121227|6035_1  65 ASFSLGQFVSGCWAGALSDVHGRRPLLISGTTVCALGTFAFGLVQSVHAAVGLRFMMGLLVQNQAVAK-AALADMSQDAppaRRAALYGMLAACFSAARALSTALTGLLAssrLIGGEKHPYLTAMAAASLPTFVAA 200
                 7899*******************************************************998777665.7778887654443899999**********************765556788899988888776655544 PP

  == domain 3    score: -0.2 bits;  conditional E-value: 0.36
   TIGR00880  64 gaaaalvagaaliadiikeeersvalgllsagialgpilGpllGavlaq 112
                 g+a+a+  gaa +  ++  + +s algll++   +g+  ++llG +l +
  MMETSP1137-20121227|6035_1 484 GGAMAWFGGAAFLFQAFLFRRVSSALGLLVTYRYCGC-GSLLLGCLLLP 531
                 6788999999999999999999999999999888886.56666666665 PP

  == domain 4    score: 1.1 bits;  conditional E-value: 0.14
   TIGR00880  39 vlsqllfals.snitvliiarilqGfgaaaalvagaaliadiikeeersvalgllsagialgpilGpllGavla....qalgwralflilallallafil 133
                 v++ +++ ls   +++l+++  l ++g    ++  ++l++  ++++  +v+ g++s++ +l   +Gp+l ++ +         + lfl++++  +l+f l
  MMETSP1137-20121227|6035_1 578 VAADMVTSLSaADMSLLLFSLSLLSVGFMSLMPCMNTLVSNCTPADSQGVIAGTVSSAGTLLRAMGPMLVGLSFsiavRLHALHRLFLAIGAAYALTFTL 677
                 555555555546788999999999999999***************************************9998864332222233444444444444433 PP

>> TIGR00710  efflux_Bcr_CflA: drug resistance transporter, Bcr/CflA subfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.9   4.6   5.5e-10   3.2e-07      32     148 ..      46     168 ..      27     175 .. 0.77
   2 ?   -3.8   2.1       2.3   1.4e+03     304     346 ..     603     642 ..     575     682 .. 0.50

  Alignments for each domain:
  == domain 1    score: 27.9 bits;  conditional E-value: 5.5e-10
   TIGR00710  32 akdlsvsasavqltltlyllglavgqLl....lGplsDsyGRkpvlLlgllvfalsslvlalsenietllvlRflqafgasaalVisqalvrDiya...keelskvysilmlllalaPllapli 148
                 a  l+ +a  v     +  + +++gq +     G lsD  GR+p l+ g++v al+  +  l+++++  + lRf+ ++ +   +V   al+ D+ +    ++   +y++l   +  a +l+  +
  MMETSP1137-20121227|6035_1  46 ASLLELPAAEVGTFVGAIQASFSLGQFVsgcwAGALSDVHGRRPLLISGTTVCALGTFAFGLVQSVHAAVGLRFMMGLLVQNQAVAKAALA-DMSQdapPARRAALYGMLAACFSAARALSTAL 168
                 45567778888877888888888888872222579**********************************************9999988875.33331223455666777666666666665555 PP

  == domain 2    score: -3.8 bits;  conditional E-value: 2.3
   TIGR00710 304 iavailvgigvslvlsialalaLeefphvaGtasallgtlrlv 346
                 ++ + l+ + ++lv+  ++a   ++++ +aGt+s+    lr +
  MMETSP1137-20121227|6035_1 603 VGFMSLMPCMNTLVSNCTPA---DSQGVIAGTVSSAGTLLRAM 642
                 44444455544444444444...45555555555543333332 PP

>> TIGR00895  2A0115: MFS transporter, aromatic acid:H+ symporter (AAHS) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.0   3.0   2.5e-08   1.4e-05      55     166 ..      61     174 ..      12     252 .. 0.77
   2 !    9.8   1.6   0.00013     0.075      92     197 ..     578     686 ..     573     704 .. 0.80

  Alignments for each domain:
  == domain 1    score: 22.0 bits;  conditional E-value: 2.5e-08
   TIGR00895  55 GfllsagLiGmvlGallfgplaDrigRkrvllvsillfsvftlasalatnvtqLlvlRflaglGlGgllpnliaL..vsEyapkrfratvvglvavGyaiGaavggllaallip 166
                 G + ++  +G  + +   g+l+D  gR+++l+ ++ + +++t a +l ++v   + lRf+ gl +     +  aL  +s  ap  +ra + g++a+ +    a++++l++ll +
  MMETSP1137-20121227|6035_1  61 GAIQASFSLGQFVSGCWAGALSDVHGRRPLLISGTTVCALGTFAFGLVQSVHAAVGLRFMMGLLVQNQAVAKAALadMSQDAPPARRAALYGMLAACFSAARALSTALTGLLAS 174
                 34444444677777888899*******************************************9976555555553389*******************9999999999998876 PP

  == domain 2    score: 9.8 bits;  conditional E-value: 0.00013
   TIGR00895  92 fsvftlasalatnvtqLlvlRflaglGlGgllpnliaLvsEyapkrfratvvglvav.Gy...aiGaavggllaallipafgWrslflvggiiplllllllikvLpEsik 197
                 +++ ++ s  a ++  Ll+   l ++G  +l+p +++Lvs  +p+  ++ ++g+v + G    a+G ++ gl  ++ +  ++ + lfl  g ++  l   l  ++p s++
  MMETSP1137-20121227|6035_1 578 VAADMVTSLSAADMSLLLFSLSLLSVGFMSLMPCMNTLVSNCTPADSQGVIAGTVSSaGTllrAMGPMLVGLSFSIAVRLHALHRLFLAIG-AAYALTFTLSLWVPRSAQ 686
                 56667788888899889999999******************************997625422256777778777899999**999998655.566677788889998886 PP

>> TIGR00898  2A0119: cation transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.7   1.1e-06   0.00064     129     203 ..      61     135 ..      54     231 .. 0.79
   2 ?    0.1   0.0     0.099        58     243     283 ..     662     702 ..     641     709 .. 0.88

  Alignments for each domain:
  == domain 1    score: 16.4 bits;  conditional E-value: 1.1e-06
   TIGR00898 129 kltqsvvfvGvLlGslvlGqlsDrfGRkkvLllstlvtavsgvltafspnytvflvlrlLvGvgiagivvvalvL 203
                   +q+++ +G ++++   G lsD  GR+ +L+  t v a+ ++   +  +    + lr++ G+  +   v+   L
  MMETSP1137-20121227|6035_1  61 GAIQASFSLGQFVSGCWAGALSDVHGRRPLLISGTTVCALGTFAFGLVQSVHAAVGLRFMMGLLVQNQAVAKAAL 135
                 567999***************************999999999999999999999999999999887766665555 PP

  == domain 2    score: 0.1 bits;  conditional E-value: 0.099
   TIGR00898 243 wLlllvslPlvlflvlvwfvpESpRwlisqgrieeAlkiLk 283
                  L l++ +   l++ l+++vp S+    ++g+   A+++L+
  MMETSP1137-20121227|6035_1 662 RLFLAIGAAYALTFTLSLWVPRSAQRQPARGHKPGAVSSLR 702
                 5889999*****************99999999999999886 PP

>> TIGR00881  2A0104: phosphoglycerate transporter family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   2.6   1.2e-06    0.0007      18     138 ..      42     168 ..      33     207 .. 0.75
   2 ?    1.4   1.8     0.047        28      82     152 ..     592     660 ..     575     692 .. 0.53

  Alignments for each domain:
  == domain 1    score: 16.5 bits;  conditional E-value: 1.2e-06
   TIGR00881  18 lpelqeeiglsktdlGlllsafsiaYgiskfvvgv....vsDrvsarvflaigLilvaivnlflgfssslwvliallalnGlf...qglgwppcgrlltkwfsrserGtvvaiwnishnvggallppl 138
                 +p   + + l ++++G  + a+ + + +++fv+g+    +sD  + r +l +g   +a+ +  +g ++s+ + + l+++ Gl+   q+++    +  + +  ++ +r+ + ++++     + al + l
  MMETSP1137-20121227|6035_1  42 APMCASLLELPAAEVGTFVGAIQASFSLGQFVSGCwagaLSDVHGRRPLLISGTTVCALGTFAFGLVQSVHAAVGLRFMMGLLvqnQAVAKAALA-DMSQDAPPARRAALYGMLAACFSAARALSTAL 168
                 5666677789999*******************864233389****************************************85333444444444.35556677777777777766666666665544 PP

  == domain 2    score: 1.4 bits;  conditional E-value: 0.047
   TIGR00881  82 slwvliallalnGlfqglgwppcgrlltkwfsrserGtvvaiwnishnvggallpplvllaialllswhvv 152
                 sl ++ + l+  G++    +p+ + l+ + ++    G + +  +++ ++  a+ p lv l++ + ++ h++
  MMETSP1137-20121227|6035_1 592 SLLLFSLSLLSVGFMS--LMPCMNTLVSNCTPADSQGVIAGTVSSAGTLLRAMGPMLVGLSFSIAVRLHAL 660
                 3322222222222222..23555555666666666666666666666666666666666666666655555 PP

>> TIGR00894  2A0114euk: Na(+)-dependent inorganic phosphate cotransporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.8   8.8e-05     0.052      79     195 ..      61     178 ..      57     198 .. 0.83

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 8.8e-05
   TIGR00894  79 GlilssvfygslilqipvGylakkygtkkvigaalllssvlslliPiaaavgvalvivlRvlqGla..eglvspaqhellakWiPPkERsrlvsavlsGaqlGtlivlpisGlicesd.l 195
                 G+i +s+++g+++     G l++  g + ++ ++ ++  + ++    +  v +   + lR++ Gl   + +v+ a  + + + +PP  R+ l ++  + ++   +++  ++Gl++ s   
  MMETSP1137-20121227|6035_1  61 GAIQASFSLGQFVSGCWAGALSDVHGRRPLLISGTTVCALGTFAFGLVQSVHA--AVGLRFMMGLLvqNQAVAKAALADMSQDAPPARRAALYGMLAACFSAARALSTALTGLLASSRlI 178
                 999*******************************9999999998888765554..4678999997522445556666667899*******************************998753 PP

>> TIGR00893  2A0114: D-galactonate transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   2.8   3.3e-05     0.019      25     142 ..      50     173 ..      36     212 .. 0.81
   2 ?   -2.0   0.6      0.46   2.7e+02     345     393 ..     480     528 ..     447     531 .. 0.80
   3 ?    5.5   2.9    0.0025       1.5     300     369 ..     578     649 ..     573     680 .. 0.76

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 3.3e-05
   TIGR00893  25 glsaaqyglvf....safsigyvlfqlpggllldriGakktlavaivlWglftllqafatalvslivlRvllGla...EaplfPgiikivasWFPakeratavsifnsaqalgaiiggplvgwil 142
                  l+aa++g+ +    ++fs+g ++ +  +g+l d  G +  l     + +l t + ++++++ + + lR+++Gl     a++ ++ + +++   P+++ra+  ++  + ++ + ++ ++l g+++
  MMETSP1137-20121227|6035_1  50 ELPAAEVGTFVgaiqASFSLGQFVSGCWAGALSDVHGRRPLLISGTTVCALGTFAFGLVQSVHAAVGLRFMMGLLvqnQAVAKAALADMSQD-APPARRAALYGMLAACFSAARALSTALTGLLA 173
                 5566665555500005677777777777899*******************************************988788888888888766.6999********************99999754 PP

  == domain 2    score: -2.0 bits;  conditional E-value: 0.46
   TIGR00893 345 agltgGlinllGnlagivgPivigaiaattGsfagallvvaalaligal 393
                   ++gG++  +G +a+++ + ++  + ++ G +    +  ++  l+g l
  MMETSP1137-20121227|6035_1 480 TQMAGGAMAWFGGAAFLFQAFLFRRVSSALGLLVTYRYCGCGSLLLGCL 528
                 5678899999999999999999999999999888888888888888877 PP

  == domain 3    score: 5.5 bits;  conditional E-value: 0.0025
   TIGR00893 300 sllliatnlvaski.aalalvalaffgkgl.aailwavisdvlskeiagltgGlinllGnlagivgPiviga 369
                 +++ ++t+l+a+++ + l +++l+ +g ++ + ++ +++s+  +  + g+  G+++++G l   +gP+++g 
  MMETSP1137-20121227|6035_1 578 VAADMVTSLSAADMsLLLFSLSLLSVGFMSlMPCMNTLVSNCTPADSQGVIAGTVSSAGTLLRAMGPMLVGL 649
                 44555555443322033334444444444459************************************9995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (786 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       135  (0.0329108); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.56u 0.14s 00:00:00.70 Elapsed: 00:00:00.52
# Mc/sec: 1995.07
//
Query:       MMETSP1137-20121227|6036_1  [L=66]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (66 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        49  (0.0119454); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:00.24
# Mc/sec: 362.97
//
Query:       MMETSP1137-20121227|6037_1  [L=372]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.012   13.0   0.2       0.02   12.3   0.2    1.3  1  TIGR03929 T7_esaA_Nterm: type VII secretion protein EsaA


Domain annotation for each model (and alignments):
>> TIGR03929  T7_esaA_Nterm: type VII secretion protein EsaA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.2   4.8e-06      0.02     109     170 ..     279     340 ..     271     359 .. 0.85

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 4.8e-06
   TIGR03929 109 pekvtlqykvnakgnaelkeeaekeaediledlNkklvdlYlasilqnlqnaqknveaivek 170
                 p +  + y+ ++  n   + ++e+ +++   + N  + ++Yl+s++  + + ++ +++ +++
  MMETSP1137-20121227|6037_1 279 PVNHRIIYQLQDVFNLLPNLNVEELVKAFAVKTNDMMLAVYLSSVIRSVIALHNLINNKLHN 340
                 55667899***************************************999888887765544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (372 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       136  (0.0331546); expected 82.0 (0.02)
Passed bias filter:                      104  (0.0253535); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.27u 0.12s 00:00:00.39 Elapsed: 00:00:00.45
# Mc/sec: 1091.11
//
Query:       MMETSP1137-20121227|6038_1  [L=93]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (93 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        29  (0.00706972); expected 82.0 (0.02)
Passed bias filter:                       27  (0.00658216); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.33
# Mc/sec: 371.97
//
Query:       MMETSP1137-20121227|6040_1  [L=36]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (36 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        23  (0.00560702); expected 82.0 (0.02)
Passed bias filter:                       21  (0.00511945); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.12s 00:00:00.23 Elapsed: 00:00:00.28
# Mc/sec: 169.70
//
Query:       MMETSP1137-20121227|6041_1  [L=64]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.58    8.2  10.9       0.63    8.1   7.5    1.1  1  TIGR03816 tadE_like_DECH: helicase/secretion neighborhood TadE-like protein


Domain annotation for each model (and alignments):
>> TIGR03816  tadE_like_DECH: helicase/secretion neighborhood TadE-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   7.5   0.00015      0.63       9      60 ..       8      62 ..       2      64 .] 0.83

  Alignments for each domain:
  == domain 1    score: 8.1 bits;  conditional E-value: 0.00015
   TIGR03816  9 avavlavllvlvaavlavgqavvarhraasaADlaALaAAdalaag...eeaaCa 60
                +va++++llv++aa++++ ++++   r ++aAD    aAA +  +      aaC+
  MMETSP1137-20121227|6041_1  8 VVALAVALLVVLAAAAVLPTLLAYGLRERAAADPMSAAAARKSSTKertIAAACR 62
                57889999999999999****************9998999877766455667776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       229  (0.0558264); expected 82.0 (0.02)
Passed bias filter:                      187  (0.0455875); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.11u 0.23s 00:00:00.34 Elapsed: 00:00:00.31
# Mc/sec: 272.49
//
Query:       MMETSP1137-20121227|6043_1  [L=165]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (165 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       160  (0.0390054); expected 82.0 (0.02)
Passed bias filter:                      148  (0.03608); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.21s 00:00:00.38 Elapsed: 00:00:00.43
# Mc/sec: 506.47
//
Query:       MMETSP1137-20121227|6044_1  [L=188]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (188 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       124  (0.0302292); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.22s 00:00:00.33 Elapsed: 00:00:00.36
# Mc/sec: 689.28
//
Query:       MMETSP1137-20121227|6045_1  [L=40]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (40 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        52  (0.0126767); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.15s 00:00:00.27 Elapsed: 00:00:00.23
# Mc/sec: 229.55
//
Query:       MMETSP1137-20121227|6046_1  [L=39]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (39 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        71  (0.0173086); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.13s 00:00:00.23 Elapsed: 00:00:00.34
# Mc/sec: 151.40
//
Query:       MMETSP1137-20121227|6047_1  [L=263]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.021   13.0   0.1        2.3    6.5   0.0    2.3  2  TIGR01557 myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class


Domain annotation for each model (and alignments):
>> TIGR01557  myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.0    0.0029        12       3      34 ..     111     138 ..     110     148 .. 0.89
   2 ?    6.5   0.0   0.00055       2.3       2      31 ..     212     237 ..     211     251 .. 0.86

  Alignments for each domain:
  == domain 1    score: 4.2 bits;  conditional E-value: 0.0029
   TIGR01557   3 rvvWteelhrrFlqAvqklGgedkatPkkIle 34 
                 r  Wt  +++   ++v+++G   +   +kI++
  MMETSP1137-20121227|6047_1 111 RKEWTCAEDEIIKEGVKRYGC-RW---RKIAA 138
                 779******************.99...99976 PP

  == domain 2    score: 6.5 bits;  conditional E-value: 0.00055
   TIGR01557   2 krvvWteelhrrFlqAvqklGgedkatPkk 31 
                 +rv+Wt  ++ + +  v +lG   +    +
  MMETSP1137-20121227|6047_1 212 ERVSWTRAEDAVIVASVAELGH-RW---YQ 237
                 599******************9.77...55 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (263 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        91  (0.0221843); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.22u 0.16s 00:00:00.38 Elapsed: 00:00:00.42
# Mc/sec: 826.50
//
Query:       MMETSP1137-20121227|6048_1  [L=414]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.7e-93  309.1   0.0    8.3e-93  308.8   0.0    1.0  1  TIGR01141 hisC: histidinol-phosphate transaminase
    8.5e-53  177.4   0.0    1.2e-52  176.9   0.0    1.1  1  TIGR01140 L_thr_O3P_dcar: threonine-phosphate decarboxylase
    2.4e-24   83.7   0.1    3.2e-24   83.3   0.1    1.1  1  TIGR03947 viomycin_VioD: capreomycidine synthase
    3.7e-19   66.7   0.0    4.7e-19   66.4   0.0    1.1  1  TIGR03540 DapC_direct: LL-diaminopimelate aminotransferase
    1.2e-13   48.6   0.2    2.2e-13   47.8   0.1    1.3  1  TIGR01265 tyr_nico_aTase: tyrosine/nicotianamine aminotransferases
    1.3e-12   45.3   0.0    2.1e-12   44.6   0.0    1.3  1  TIGR03539 DapC_actino: succinyldiaminopimelate transaminase
    2.7e-11   40.8   0.0    3.9e-11   40.2   0.0    1.2  1  TIGR03538 DapC_gpp: succinyldiaminopimelate transaminase
    1.1e-10   38.9   0.0    8.7e-10   35.9   0.0    1.9  2  TIGR03537 DapC: succinyldiaminopimelate transaminase
      8e-09   32.6   0.1    1.4e-08   31.8   0.1    1.3  1  TIGR01264 tyr_amTase_E: tyrosine aminotransferase
    1.4e-07   28.6   0.0    2.1e-07   28.0   0.0    1.2  1  TIGR03542 DAPAT_plant: LL-diaminopimelate aminotransferase
    5.1e-05   20.0   0.5    0.00015   18.4   0.0    1.8  2  TIGR02080 O_succ_thio_ly: O-succinylhomoserine (thiol)-lyase
     0.0028   14.4   0.0     0.0049   13.6   0.0    1.5  2  TIGR01328 met_gam_lyase: methionine gamma-lyase
     0.0085   12.3   0.0      0.013   11.7   0.0    1.3  1  TIGR03801 asp_4_decarbox: aspartate 4-decarboxylase


Domain annotation for each model (and alignments):
>> TIGR01141  hisC: histidinol-phosphate transaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  308.8   0.0   2.6e-95   8.3e-93      21     348 ..      81     412 ..      63     413 .. 0.92

  Alignments for each domain:
  == domain 1    score: 308.8 bits;  conditional E-value: 2.6e-95
   TIGR01141  21 evvkLnsnEnPfgpsekvkealkeelk..klhrYpdpqalelkealakylgveeenillgnGsdelielliraflepg.davlvleptysmYevsakiagaevkevplked..gqedleavleaakekvklvflasPnnPtGnllkreeiekvleevedalVVvDeAYieFsee....asvlella..eypnlvvlrTlSKafgLAglRvGyaianaeiiealekvrapynvsslaleaavaalrdsdkiektveevkkererlleelkkle.gle.vyeSkaNFvlikvkedaeelleallek.giivRdlksaeglleeclRitvGtreenerllealke 348
                   + L++nEnP+gp+  + ++    ++  +l+rYpdp ++elk+ +a   g+++  i++gnGsde+i+llir ++ pg d++lv++pty+mY+v a+i+++ v+ vpl++d  +q  ++++ ++ ++ vkl+fl+sP nPt  ll+r+++e+v++++       DeAYi+F+ +    as ++l++  +ypn+vv++TlSKa gLAg R+G+++a+++i+ +++k++ap+n+s+la  +a++alr+++ ++++v+ v kerer+++e+ k++ +++ +y+S+aNF+l++++ +ae+++ al ++ +++vR   s+  l+e+c+Rit+Gt+ e ++ll+al++
  MMETSP1137-20121227|6048_1  81 FPILLDANENPHGPP--IDDQS-LPITalQLERYPDPRQQELKQCIATLRGCHPSCIFIGNGSDEVIDLLIRLVCVPGkDQILVCSPTYAMYSVFASINDVGVVDVPLTDDgdFQLRVDELCQKLTKTVKLIFLCSPGNPTSRLLQRRDVEAVAAKA-----TGDEAYIDFALDqgveASCMQLVSegKYPNVVVSQTLSKAWGLAGARLGLGFACNDIVTIIDKLKAPFNLSVLAERVAIQALRNASVVKQRVQLVLKERERVKNEMLKMKpQVKsIYNSDANFLLVQIE-QAEAVCAALAQRfNVLVRPRCSML-LCENCVRITIGTPGEXDALLNALRK 412
                 5799***********..44333.333335**********************************************************************************99999****************************************8.....46********99899989999986337****************************************************************************998776439999*************9.99999999987659*******9*6.89********************997 PP

>> TIGR01140  L_thr_O3P_dcar: threonine-phosphate decarboxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  176.9   0.0   3.8e-55   1.2e-52      23     331 .]      86     411 ..      76     411 .. 0.92

  Alignments for each domain:
  == domain 1    score: 176.9 bits;  conditional E-value: 3.8e-55
   TIGR01140  23 Stninplgpp...evleislealaryPdeeadelreaaaayygldaesvlavnGaqeaiqllprl..lapkrv.lvlaptyseyaralraagaevvels.........dleelaael.eeadllvvvnPnNPtGrllekeellalaerlkarggllvvDEAFidftpaeslaalaea......lpglvVlrSltKffglaGlRlGfvvAepallerlkealgpWsvngpAqavgeaaladeawqkatrarlaaererlaallaalgllev...vggtalFllvrtedaaalkeaLarr.gilvRdfenfegldprllRvavrteeenerLleala 331
                  +n np+gpp   + l+i++ +l+ryPd++ +el++ +a   g++++++ ++nG+ e+i ll rl  ++ k++ lv +pty+ y   ++++++ vv ++          ++el ++l ++++l++++ P NPt+rll++++++a+a+++         DEA+idf  ++ + a   +      +p++vV + l K +glaG RlG  +A +++++ + +++ p +++ +A++v+ +al++++++k+  + + +erer+++++ +++  +v   ++++a+Fllv+ e+a+a+ +aLa+r ++lvR   +   l ++++R+ + t  e + Ll+al+
  MMETSP1137-20121227|6048_1  86 DANENPHGPPiddQSLPITALQLERYPDPRQQELKQCIATLRGCHPSCIFIGNGSDEVIDLLIRLvcVPGKDQiLVCSPTYAMYSVFASINDVGVVDVPltddgdfqlRVDELCQKLtKTVKLIFLCSPGNPTSRLLQRRDVEAVAAKAT-------GDEAYIDFALDQGVEASCMQlvsegkYPNVVVSQTLSKAWGLAGARLGLGFACNDIVTIIDKLKAPFNLSVLAERVAIQALRNASVVKQRVQLVLKERERVKNEMLKMKP-QVksiYNSDANFLLVQIEQAEAVCAALAQRfNVLVRPRCS-MLLCENCVRITIGTPGEXDALLNALR 411
                 5899********999**********************************************99996545555569*****************************999988888888889*****************************87.......699999998887444443333466899***************************************************************************99998876.4334499*****************************8887.6899999****************996 PP

>> TIGR03947  viomycin_VioD: capreomycidine synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.3   0.1     1e-26   3.2e-24      54     344 ..     117     400 ..     103     413 .. 0.85

  Alignments for each domain:
  == domain 1    score: 83.3 bits;  conditional E-value: 1e-26
   TIGR03947  54 eklraaladrlagGdaekvlvthGsseaiylvltallrPG.devvvvdpayhslselavalgakvrrwplaaerdfrpdlddlralvtdrtrlvvvnfPhnPtGasvderelsellelaaesgavllWdaafadlvydaeplpepsaaadrvisfgtlskafGlpGlrvGWcvaPkdllaelvrlrdyltlslsPlvellaevavehadalieprlaearanrrrlldWaaahedvvrltvPeGGvaafprfagladvtdlCerllarhgvlvvPGscfGaadr.vrlGfggs 344
                 ++l++ +a  l+g  +  +++  Gs e i l + ++  PG d+++v  p+y   s +a   ++ v   pl+ + df+ ++d+l + +t+  +l+ +  P nPt + ++ r+ +++ ++a+  +a++  d a+ + v  +        ++  v+   tlska+Gl+G r+G   a +d+++ + +l+      ls l e++a +a+++a  +++ r++   + r+r+++   + + +v+    +        + + ++ +++C  l++r  vlv P   +   ++ vr+  g++
  MMETSP1137-20121227|6048_1 117 QELKQCIAT-LRGCHPSCIFIGNGSDEVIDLLIRLVCVPGkDQILVCSPTYAMYSVFASINDVGVVDVPLTDDGDFQLRVDELCQKLTKTVKLIFLCSPGNPTSRLLQRRDVEAVAAKATGDEAYI--DFALDQGVEASCMQLVSEGKYPNVVVSQTLSKAWGLAGARLGLGFACNDIVTIIDKLKAPF--NLSVLAERVAIQALRNAS-VVKQRVQLVLKERERVKNEMLKMKPQVKSIYNSDAN---FLLVQIEQAEAVCAALAQRFNVLVRPRCSMLLCENcVRITIGTP 400
                 567777775.78889999*********************9899************************************************************************99999999997..778877665554444455689999999*************************999998765..5677************96.6899************99999999999988776543...345677778899*************9876655544466655544 PP

>> TIGR03540  DapC_direct: LL-diaminopimelate aminotransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.4   0.0   1.5e-21   4.7e-19      99     349 ..     139     381 ..     133     412 .. 0.78

  Alignments for each domain:
  == domain 1    score: 66.4 bits;  conditional E-value: 1.5e-21
   TIGR03540  99 GskeGiahl.plafvnpGdivlvpdPgyPvykistllaggepyelPlkeendflPdldaipedvlkkakilflnyPnnPtsavadkeffkevvefakeyniivvhdaayseivfdeykalsflev..dgakdvaielhslsktynmtGWrigfavGnkeliaalgkvksnvdsGvfqaiqeaaiaaleeeeevvkelrkvykkrrdllvealkkiGldvkk...pkatfylWvkvPeGytsaefakklleeagvvvt 349
                 Gs e i  l  l +v   d +lv++P+y +y++ + + +  +  +Pl+ + df   +d++ ++++k  k++fl  P nPts + ++  ++ v + a       + d+ay + + d+    s +++  +g     +  ++lsk++ ++G r+g+    +++++++ k+k   +  v     ++ai+al++ + v ++++ v k+r   + +++ k+  +vk+   ++a  +l v++ +   +   ++ l +  +v+v 
  MMETSP1137-20121227|6048_1 139 GSDEVIDLLiRLVCVPGKDQILVCSPTYAMYSVFASINDVGVVDVPLTDDGDFQLRVDELCQKLTKTVKLIFLCSPGNPTSRLLQRRDVEAVAAKA-------TGDEAYIDFALDQGVEASCMQLvsEGKYPNVVVSQTLSKAWGLAGARLGLGFACNDIVTIIDKLKAPFNLSVLA--ERVAIQALRNASVVKQRVQLVLKERER-VKNEMLKMKPQVKSiynSDAN-FLLVQIEQ---AEAVCAALAQRFNVLVR 381
                 666777654146677777********************************************************************9998887655.......469**********99999988533666666777899*******************************9988875..799******987766666666666655.555555555444431103333.34455533...34455555555555555 PP

>> TIGR01265  tyr_nico_aTase: tyrosine/nicotianamine aminotransferases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.8   0.1   6.8e-16   2.2e-13      99     386 ..     134     402 ..     127     412 .. 0.83

  Alignments for each domain:
  == domain 1    score: 47.8 bits;  conditional E-value: 6.8e-16
   TIGR01265  99 vvltsGcsqaielviealanag.aniLvPrPgfplYetlakalglevrkydllpekdweidldelealaDektvalvvinPsnPcGsvfsrdHlekvvevaeklklliiaDEvYdklvfgdatfvplaklas..kvP.vlslggiskrwlvPGWrlGW.livvdpkgiledtvlqglkkllqlildpatlvqgAlpdilektpkeffekkikvlkenaelvyeelkeipgltcvkPegamyllvklelelleeikdDvdFceklvkEesvillP.gsalelenylRitltveks 386
                 +++  G+ + i+l+i+ ++ +g ++iLv  P++++Y+  a+ +++ v    l  + d+++ +del +   +  +++ +  P+nP+    +r  +e v++ a+        DE Y ++++++    +  +l s  k P v++ +++sk w   G rlG   +++d        +++ lk+  +l++ +  ++ +Al ++         +++  vlke   +  e+lk  p ++    + a +llv++e  +          c  l++  +v + P  s+l  en +Rit++++ +
  MMETSP1137-20121227|6048_1 134 IFIGNGSDEVIDLLIRLVCVPGkDQILVCSPTYAMYSVFASINDVGVVDVPLTDDGDFQLRVDELCQKLTKTVKLIFLCSPGNPTSRLLQRRDVEAVAAKAT-------GDEAYIDFALDQGVEASCMQLVSegKYPnVVVSQTLSKAWGLAGARLGLgFACNDIVT-----IIDKLKAPFNLSVLAERVAIQALRNAS-----VVKQRVQLVLKERERVKNEMLKMKPQVKSIYNSDANFLLVQIEQAEA--------VCAALAQRFNVLVRPrCSMLLCENCVRITIGTPGE 402
                 89999**************888368********************************************99999*****************99998887775.......7*********9855555555544123452777789*************7244444443.....455688888888877777777776542.....223456678999999999**********************9987765........59************95588999********99865 PP

>> TIGR03539  DapC_actino: succinyldiaminopimelate transaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.6   0.0   6.6e-15   2.1e-12      86     319 ..     137     374 ..     117     403 .. 0.72

  Alignments for each domain:
  == domain 1    score: 44.6 bits;  conditional E-value: 6.6e-15
   TIGR03539  86 viGtkelvallPtllGlgagdtvviPevayPtyevgarlagaeav............aaddlteldpekvkliwlnsPanPtGrvlsveelrkvvalarergvvvasdecylelgWegeavsvldpevcggdlegllavhslskrsnlagyragfvaGdealvaellevrkhaGlmvpaPvqaamvaaladdehvaeqkeryaarrellkaalekaGfr...iehseaglylWatrgedaretvdrlae 319
                   G+ e++ ll +l+ +   d++++ + +y  y+v a++    +v            ++d+l +  +++vkli+l sP+nPt r+l+  ++++v a a       + de y++++ ++ + +   + v++g++ +++   +lsk   lag r g    ++++v+ + + +    + +++  +    +al++ + v+++ ++  + re++k+ + k+  +   i +s+a + l     e+a +  ++la+
  MMETSP1137-20121227|6048_1 137 GNGSDEVIDLLIRLVCVPGKDQILVCSPTYAMYSVFASINDVGVVdvpltddgdfqlRVDELCQKLTKTVKLIFLCSPGNPTSRLLQRRDVEAVAAKA-------TGDEAYIDFALDQGVEASCMQLVSEGKYPNVVVSQTLSKAWGLAGARLGLGFACNDIVTIIDKLKA--PFNLSVLAERVAIQALRNASVVKQRVQLVLKERERVKNEMLKMKPQvksIYNSDANFLLVQI--EQAEAVCAALAQ 374
                 5599**********************************9877655212111111111455555555589******************99999887665.......46**********9988888899*************************9988888888776555543..33344444444455667666666666666667777766666554441115677887776544..444444555555 PP

>> TIGR03538  DapC_gpp: succinyldiaminopimelate transaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.2   0.0   1.2e-13   3.9e-11      94     354 ..     134     381 ..      78     392 .. 0.71

  Alignments for each domain:
  == domain 1    score: 40.2 bits;  conditional E-value: 1.2e-13
   TIGR03538  94 vlPvnGtrealfafvqavidraekalvvlPnPfyqiyeGaallagaepyflnctaengfkpdfdavpeevWkrvqllfvcsPgnPtGavlsleelkklleladkydfiiasdecyselyldeaeaPvGlleaaael.GrddfkrllvfhslskrsnvPGlrsGfvaGdaellkeflryrtyhGcampiavqlasiaaWedekhvrenralyrekfaavle.il...gavldlelPdasfylWlkvpdgddeafaralyeeenvkvl 354
                 ++  nG+ e +  +++ v  + ++ ++++  P y +y   a + +   + ++ t++ +f+   d + +++ k v+l+f+csPgnPt ++l+  +++++ ++a       + de y ++ ld+      +  ++++l  + ++ +++v ++lsk   + G r G+     ++++   + ++     +++   + +i a  + + v++  +l  +  ++v++ +l    +v ++ + da f l +++  ++ ea++ al ++ nv v 
  MMETSP1137-20121227|6048_1 134 IFIGNGSDEVIDLLIRLVCVPGKD-QILVCSPTYAMYSVFASINDVGVVDVPLTDDGDFQLRVDELCQKLTKTVKLIFLCSPGNPTSRLLQRRDVEAVAAKA-------TGDEAYIDFALDQG-----VEASCMQLvSEGKYPNVVVSQTLSKAWGLAGARLGLGFACNDIVTIIDKLKAP--FNLSVLAERVAIQALRNASVVKQRVQLVLKERERVKNeMLkmkPQVKSIYNSDANFLL-VQI--EQAEAVCAALAQRFNVLVR 381
                 555688888888888888777665.5666789***************************************************************9999887.......58****99999776.....5555555413457********************87655555555555554443..3344555555555555555444444433333333332022000234445556666644.455..5677788888888777765 PP

>> TIGR03537  DapC: succinyldiaminopimelate transaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.9   0.0   2.7e-12   8.7e-10      85     271 ..     154     336 ..     129     366 .. 0.79
   2 ?    0.7   0.0      0.14        44      42      66 ..     365     389 ..     358     394 .. 0.87

  Alignments for each domain:
  == domain 1    score: 35.9 bits;  conditional E-value: 2.7e-12
   TIGR03537  85 eerkkviygtpgypvyerGalfaggealkvklkkedgflleldaveeailretkivwinyphnptGaeapasylkevaelareygiilasdecyaeiysee.kpasvlevgle....nvlafhslskrsGmtGyrsgflaGdeelvsalrklrasvGvaspefvqaaataawsddahvaerrkifkrkrdlf 271
                 + + ++++ +p+y++y + a   +   + v l+ + +f l++d++ +++ +  k++++  p npt     +  ++ va+ a       + de y +   ++   as +++  e    nv++ ++lsk  G++G r g+    +++v+ + kl+a + ++   + +  a  a  + + v++r ++  + r++ 
  MMETSP1137-20121227|6048_1 154 PGKDQILVCSPTYAMYSVFASINDVGVVDVPLTDDGDFQLRVDELCQKLTKTVKLIFLCSPGNPTSRLLQRRDVEAVAAKA-------TGDEAYIDFALDQgVEASCMQLVSEgkypNVVVSQTLSKAWGLAGARLGLGFACNDIVTIIDKLKAPFNLSV--LAERVAIQALRNASVVKQRVQLVLKERERV 336
                 467789999*********************************************************999998888888776.......579*****9877656777777755444449********************9999***********9988764..456666677777777777777666655554 PP

  == domain 2    score: 0.7 bits;  conditional E-value: 0.14
   TIGR03537  42 reaiagylerrfgvkldpdaevlps 66 
                  ea++  l +rf+v + p + +l +
  MMETSP1137-20121227|6048_1 365 AEAVCAALAQRFNVLVRPRCSMLLC 389
                 5899**************9999876 PP

>> TIGR01264  tyr_amTase_E: tyrosine aminotransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.8   0.1   4.5e-11   1.4e-08     102     259 ..     136     290 ..     130     368 .. 0.76

  Alignments for each domain:
  == domain 1    score: 31.8 bits;  conditional E-value: 4.5e-11
   TIGR01264 102 lasGcshalelaiealadaG.envlvPrPGfplyetlakaldievklynlladedweidlkelesliddktkalivnnPsnPcGsvfsrkhleellalaerlklpiladeiyedlvfkgatflalaslss..evP.ilslgGlakrllvPGWrlGWliihdr 259
                 +  G+ + ++l i  ++ +G +++lv  P +++y+  a   d++v    l  d d+++ ++el +   +  k++ +  P+nP+   ++r+ +e + a a         de y d+  ++    +  +l s  + P +++ + l+k + + G rlG     + 
  MMETSP1137-20121227|6048_1 136 IGNGSDEVIDLLIRLVCVPGkDQILVCSPTYAMYSVFASINDVGVVDVPLTDDGDFQLRVDELCQKLTKTVKLIFLCSPGNPTSRLLQRRDVEAVAAKA-------TGDEAYIDFALDQGVEASCMQLVSegKYPnVVVSQTLSKAWGLAGARLGLGFACND 290
                 56788899***********9568******************************************************************9998665544.......48********9997777777776522466245667899**********97555444 PP

>> TIGR03542  DAPAT_plant: LL-diaminopimelate aminotransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.0   0.0   6.5e-10   2.1e-07      94     328 ..     130     365 ..     115     370 .. 0.72

  Alignments for each domain:
  == domain 1    score: 28.0 bits;  conditional E-value: 6.5e-10
   TIGR03542  94 dpeeifisdGakcdvarllelfgs..dktvavqdPvyPvyvdsavlaGragvldddgkykkivylpctkenefiPelpe.....ekkvdiiylCsPnnPtGtvltkeqlkelvdyakendslilfdaayeafisdpslPksiye.iegakecaiei.rsfsktlGftGvrlgytvvPkelk.vedg....eslkklWerllctkfnGaslivqraaeav.....lakeglqqikeaisyymenarilrkaleaa 328
                 +p+ ifi +G+   +  l  l+    ++++ v  P+y +y   a ++              +v +p t++ +f+  + e     +k+v++i+lCsP nPt   l++ +++++   a+        d ay  f  d+ +  s  + + + k+  + + +++sk+ G++G rlg+    +++  + d+     +l  l er+    +  as++ qr          +++e l+ + ++ s y ++a+ l  ++e+a
  MMETSP1137-20121227|6048_1 130 HPSCIFIGNGSDEVIDLLIRLVCVpgKDQILVCSPTYAMYSVFASINDV-----------GVVDVPLTDDGDFQLRVDElcqklTKTVKLIFLCSPGNPTSRLLQRRDVEAVAAKATG-------DEAYIDFALDQGVEASCMQlVSEGKYPNVVVsQTLSKAWGLAGARLGLGFACNDIVtIIDKlkapFNLSVLAERVAIQALRNASVVKQRVQLVLkererVKNEMLKMKPQVKSIYNSDANFLLVQIEQA 365
                 6778999999987766666555321145688999999999988888776...........5666666666666543332111223569********************9988655543.......8899999999**99998873678888777663689*************9999887513444565578899999**************987655411111344445555667778888888877777766 PP

>> TIGR02080  O_succ_thio_ly: O-succinylhomoserine (thiol)-lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.0   4.7e-07   0.00015      47     163 ..     110     235 ..     103     255 .. 0.71
   2 ?   -0.9   0.1      0.36   1.1e+02     240     277 ..     315     353 ..     307     377 .. 0.73

  Alignments for each domain:
  == domain 1    score: 18.4 bits;  conditional E-value: 4.7e-07
   TIGR02080  47 rsgnPtrdllekalaelekGadavv..tssGmsaiellvi.allkpddllvaPhdcyGGtyrllkalakkgklkvqlvdqsdeea....lekalaekpklvlietPsnPllrvv...diaklcklak 163
                 r  +P ++ l++++a l + + + +   +     i+ll+  + +  +d +++    y   y ++ + ++ g++ v l+d  d+++    l + l++ +kl+++ +P nP  r+    d+++++  a 
  MMETSP1137-20121227|6048_1 110 RYPDPRQQELKQCIATLRGCHPSCIfiGNGSDEVIDLLIRlVCVPGKDQILVCSPTYA-MYSVFASINDVGVVDVPLTDDGDFQLrvdeLCQKLTKTVKLIFLCSPGNPTSRLLqrrDVEAVAAKAT 235
                 6667888888889999987776543113444457887764134445566777777885.8*********************9985333377888889************877761115555544443 PP

  == domain 2    score: -0.9 bits;  conditional E-value: 0.36
   TIGR02080 240 llrGlrtlaarvreqernakki.veylqkqplvkkvyyp 277
                  lr    +  rv+   ++ +++  e+l+ +p+vk++y +
  MMETSP1137-20121227|6048_1 315 ALRNASVVKQRVQLVLKERERVkNEMLKMKPQVKSIYNS 353
                 566666666777666555555524788899999999865 PP

>> TIGR01328  met_gam_lyase: methionine gamma-lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   0.0   1.6e-05    0.0049      55     174 ..     110     238 ..     107     364 .. 0.78
   2 ?   -2.4   0.0       1.1   3.6e+02     121     157 ..     323     358 ..     307     381 .. 0.55

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 1.6e-05
   TIGR01328  55 rlgnptvdllerriaelegae.aavatasGmgaiaatllsll..kagdevisdetlyGctfalledaltkfgidvkfvd....maspeevkaaikdntkivyfetpanptlkli...dleavvrvakekg 174
                 r  +p  + l++ ia+l g+  +++ ++ G   +   l+ l+     d++++    y   ++++ +  +   +dv  +d      +++e+ +++ +  k++++ +p npt +l+   d+eav+  a  ++
  MMETSP1137-20121227|6048_1 110 RYPDPRQQELKQCIATLRGCHpSCIFIGNGSDEVIDLLIRLVcvPGKDQILVCSPTYA-MYSVFASINDVGVVDVPLTDdgdfQLRVDELCQKLTKTVKLIFLCSPGNPTSRLLqrrDVEAVAAKATGDE 238
                 66789999**********986479999******999998886215689***9999886.5777777777777777766522224589***********************99984445666655554444 PP

  == domain 2    score: -2.4 bits;  conditional E-value: 1.1
   TIGR01328 121 kfgidvkfvdmaspeevkaaikdntkivyfetpanpt 157
                 k  ++    + +++++ + ++k++ k +y    an  
  MMETSP1137-20121227|6048_1 323 KQRVQLVLKERERVKNEMLKMKPQVKSIYNSD-ANFL 358
                 55555555556666666666777777777433.3333 PP

>> TIGR03801  asp_4_decarbox: aspartate 4-decarboxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.7   0.0   4.2e-05     0.013     184     268 ..     156     233 ..     143     303 .. 0.72

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 4.2e-05
   TIGR03801 184 gDkialllPiftPyleipelerydlevvkikadeakedgkatwqytdkelekLkdpkikalfvvnPsnPpsvaiseesieklaki 268
                 +D+i +  P+++ y   +++++    vv++  ++        +q   +el +   +++k +f+  P nP+s  ++++ +e +a+ 
  MMETSP1137-20121227|6048_1 156 KDQILVCSPTYAMYSVFASINDVG--VVDVPLTDDG-----DFQLRVDELCQKLTKTVKLIFLCSPGNPTSRLLQRRDVEAVAAK 233
                 677777777777777777777544..3444333333.....499999999888899********************999988764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (414 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       209  (0.0509508); expected 82.0 (0.02)
Passed bias filter:                      176  (0.0429059); expected 82.0 (0.02)
Passed Vit filter:                        25  (0.00609459); expected 4.1 (0.001)
Passed Fwd filter:                        13  (0.00316919); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.54u 0.19s 00:00:00.73 Elapsed: 00:00:00.55
# Mc/sec: 993.52
//
Query:       MMETSP1137-20121227|6049_1  [L=208]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (208 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        59  (0.0143832); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.16s 00:00:00.37 Elapsed: 00:00:00.36
# Mc/sec: 762.60
//
Query:       MMETSP1137-20121227|6050_1  [L=158]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (158 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        53  (0.0129205); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.16s 00:00:00.34 Elapsed: 00:00:00.31
# Mc/sec: 672.72
//
Query:       MMETSP1137-20121227|6051_1  [L=223]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (223 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       175  (0.0426621); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.15s 00:00:00.34 Elapsed: 00:00:00.52
# Mc/sec: 566.03
//
Query:       MMETSP1137-20121227|6052_1  [L=372]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (372 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       197  (0.0480254); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.16s 00:00:00.44 Elapsed: 00:00:00.33
# Mc/sec: 1487.88
//
Query:       MMETSP1137-20121227|6053_1  [L=522]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (522 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        91  (0.0221843); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.15s 00:00:00.50 Elapsed: 00:00:00.33
# Mc/sec: 2087.83
//
Query:       MMETSP1137-20121227|6054_1  [L=200]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (200 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       177  (0.0431497); expected 82.0 (0.02)
Passed bias filter:                      143  (0.034861); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.18s 00:00:00.39 Elapsed: 00:00:00.35
# Mc/sec: 754.22
//
Query:       MMETSP1137-20121227|6058_1  [L=625]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.9e-05   19.7   0.1    0.00012   19.0   0.1    1.2  1  TIGR01679 bact_FAD_ox: FAD-linked oxidoreductase
     0.0026   14.5   0.1      0.008   12.9   0.0    1.7  2  TIGR01678 FAD_lactone_ox: sugar 1,4-lactone oxidases


Domain annotation for each model (and alignments):
>> TIGR01679  bact_FAD_ox: FAD-linked oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.1   5.7e-08   0.00012       6     172 ..      89     259 ..      86     266 .. 0.77

  Alignments for each domain:
  == domain 1    score: 19.0 bits;  conditional E-value: 5.7e-08
   TIGR01679   6 GvqvaePaaivaPkdegeladvvkvaakp...vravGsGhsftdla.ktdGtlvsleklegvvdvdqqkdeatvkaGtrlgalgpllaekgrglenlgdidkqsigGalgtathGtGvklqalharvvslrlvtasGkvldlseaddqeiflaarvslGal.Gvisqvtlrt 172
                 G   a+P a+v+ k+  ++  +v+   +      a    h f + a +  G+++++++l    +vd q+d a   +G  lgal  +la++++ ++   +    + g  lg         l+ +   +v+l  v++ G++  ++e +  +++  a+   G + G++    l++
  MMETSP1137-20121227|6058_1  89 GSDWANPLAVVRAKSVEDVQGAVRCVXAAqvdTCARAGAHGFENDAcCPGGVIIDVQDLL-WFSVDXQSDVASFGSGYTLGALYYMLAQQQLVVPGGTEGHVGASGLILGCGRGMMTQYLGLICDTIVGLEYVDSDGNLQTANEREKTDMLWIAKGGGGNFpGIVVTYHLQA 259
                 67789999*****999999988886443332244555679998665156789******97.579***************************99998766655555555555444445567778889***********************99988877777656666656655 PP

>> TIGR01678  FAD_lactone_ox: sugar 1,4-lactone oxidases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.9   0.0   3.9e-06     0.008      14     180 ..      94     261 ..      90     266 .. 0.79
   2 ?   -1.6   0.0       0.1   2.1e+02     408     437 ..     499     528 ..     486     529 .. 0.84

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 3.9e-06
   TIGR01678  14 kperyfqPksveevrellksareaekklkvvGsGhs.PsdivvtdgylvsldklnkvlkfdeekaditveaGirlyqlneildekGyslsnlGsisevsvaGiistgthgs.slkhgllssqvvaltivladGellelseerdkdvfkaarvslGal.GiivsvtirvvP 180
                 +p+     ksve+v+  +     a+       + h    d ++  g +++++ l    ++d ++      +G  l  l  +l ++ + ++  G+   v  +G+i  +  g  + + gl+   +v l  v +dG+l++ +e +++d++  a+   G + Gi+v+  ++  P
  MMETSP1137-20121227|6058_1  94 NPLAVVRAKSVEDVQGAVRCVXAAQVDTCARAGAHGfENDACCPGGVIIDVQDLL-WFSVDXQSDVASFGSGYTLGALYYMLAQQQLVVPG-GTEGHVGASGLILGCGRGMmTQYLGLICDTIVGLEYVDSDGNLQTANEREKTDMLWIAKGGGGNFpGIVVTYHLQASP 261
                 5667777788888888887766666555544444441677888888888888775.45677777777889999999999999999988875.88889999**99888888615567***********************************9999877999999888777 PP

  == domain 2    score: -1.6 bits;  conditional E-value: 0.1
   TIGR01678 408 kekdyeeeyedlkkflkirkkldPkgvfln 437
                 +e+ + + + ++ + + i+++ dP+ vf n
  MMETSP1137-20121227|6058_1 499 REQWLSQFFSNVPRMKAIKRREDPDVVFRN 528
                 56667778899999*************977 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (625 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        85  (0.0207216); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.14s 00:00:00.55 Elapsed: 00:00:00.59
# Mc/sec: 1398.19
//
Query:       MMETSP1137-20121227|6060_1  [L=121]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (121 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       128  (0.0312043); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.12s 00:00:00.26 Elapsed: 00:00:00.27
# Mc/sec: 591.51
//
Query:       MMETSP1137-20121227|6062_1  [L=299]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (299 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        33  (0.00804486); expected 82.0 (0.02)
Passed bias filter:                       32  (0.00780107); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.14s 00:00:00.36 Elapsed: 00:00:00.34
# Mc/sec: 1160.73
//
Query:       MMETSP1137-20121227|6063_1  [L=137]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      0.007   13.1   0.9     0.0082   12.9   0.6    1.1  1  TIGR03182 PDH_E1_alph_y: pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit


Domain annotation for each model (and alignments):
>> TIGR03182  PDH_E1_alph_y: pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.9   0.6     2e-06    0.0082     238     307 ..      56     128 ..      24     133 .. 0.78

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 2e-06
   TIGR03182 238 gHslsDpakyRskeeveevkkrdpie.klkkaliekgllseeelkeiekevkaeveeave..faeespepdve 307
                  Hs+       s+ e +++++   ++ +l+++l+++ ++++e+l+++++ v++ev+ a++   a++s  p+++
  MMETSP1137-20121227|6063_1  56 EHSFNGESADGSNTESQRWQATTALKnSLRERLTKHVVMQQEMLQHLDALVSSEVDAAASsdAAHASCAPSAS 128
                 6777777777889999****888886269**************************998751156667777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (137 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       195  (0.0475378); expected 82.0 (0.02)
Passed bias filter:                      102  (0.0248659); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.16u 0.16s 00:00:00.32 Elapsed: 00:00:00.39
# Mc/sec: 463.65
//
Query:       MMETSP1137-20121227|6064_1  [L=93]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (93 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        33  (0.00804486); expected 82.0 (0.02)
Passed bias filter:                       30  (0.00731351); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.12s 00:00:00.25 Elapsed: 00:00:00.28
# Mc/sec: 438.39
//
Query:       MMETSP1137-20121227|6065_1  [L=173]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.6e-07   26.4   0.0      9e-06   21.8   0.0    2.1  2  TIGR00870 trp: transient-receptor-potential calcium channel protein
     0.0068   13.5   0.4        0.8    6.7   0.0    2.0  2  TIGR02957 SigX4: RNA polymerase sigma-70 factor, TIGR02957 family


Domain annotation for each model (and alignments):
>> TIGR00870  trp: transient-receptor-potential calcium channel protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.8   0.0   4.4e-09     9e-06     118     164 ..      51      97 ..      27     112 .. 0.80
   2 !    1.9   0.0    0.0046       9.4     129     152 ..     128     151 ..     121     154 .. 0.88

  Alignments for each domain:
  == domain 1    score: 21.8 bits;  conditional E-value: 4.4e-09
   TIGR00870 118 elandestseftkgitalilAihkqnyeivklLlekgasvearakgd 164
                  +   ++ ++   g t+l+ A+ +  + +v+lLl+ ga+v+a+  g 
  MMETSP1137-20121227|6065_1  51 SHHLHTDGGDGGSGYTPLHYAARNGHVDCVELLLQEGANVNATTSGG 97 
                 55566677777899***************************988775 PP

  == domain 2    score: 1.9 bits;  conditional E-value: 0.0046
   TIGR00870 129 tkgitalilAihkqnyeivklLle 152
                 + g tal+ A+ +   e+++lLl+
  MMETSP1137-20121227|6065_1 128 SDGDTALHKAAARGHTEVLSLLLK 151
                 568999*******99999999997 PP

>> TIGR02957  SigX4: RNA polymerase sigma-70 factor, TIGR02957 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.7   0.0   0.00039       0.8     165     200 ..      23      59 ..       7      66 .. 0.80
   2 !    5.4   0.0   0.00093       1.9     176     223 ..      71     119 ..      65     152 .. 0.75

  Alignments for each domain:
  == domain 1    score: 6.7 bits;  conditional E-value: 0.00039
   TIGR02957 165 eerellerFlealktgdlegllelLaedv.vlvgDGg 200
                 ee ++l+  ++a+++g+ ++l+ +L+ +   l++DGg
  MMETSP1137-20121227|6065_1  23 EELDFLRSACSAAQNGETDKLRRMLKRNShHLHTDGG 59 
                 55567788899**************98762699**98 PP

  == domain 2    score: 5.4 bits;  conditional E-value: 0.00093
   TIGR02957 176 alktgdlegllelLaedvvlvg.DGgGkvqaalrpvvgadrvarlllgl 223
                 a+++g ++ ++ lL+e + + +   gG+++  +  ++g++rv  ll+  
  MMETSP1137-20121227|6065_1  71 AARNGHVDCVELLLQEGANVNAtTSGGATALHRAAFMGHQRVCSLLVRA 119
                 8999***********9987655055666666667899******998754 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (173 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        65  (0.0158459); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.21u 0.11s 00:00:00.32 Elapsed: 00:00:00.73
# Mc/sec: 312.80
//
Query:       MMETSP1137-20121227|6066_1  [L=490]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   7.4e-105  349.6   3.6     3e-102  340.9   2.5    2.1  1  TIGR02965 xanthine_xdhB: xanthine dehydrogenase, molybdopterin binding subunit
    5.9e-90  300.1   0.0    7.2e-90  299.8   0.0    1.0  1  TIGR02969 mam_aldehyde_ox: aldehyde oxidase
    2.3e-21   73.0   0.3      6e-21   71.6   0.2    1.6  1  TIGR03313 Se_sel_red_Mo: probable selenate reductase, molybdenum-binding subunit
    1.2e-19   68.1   0.2    2.4e-19   67.0   0.1    1.4  1  TIGR03196 pucD: xanthine dehydrogenase D subunit
    9.8e-18   61.7   1.2    3.9e-17   59.7   0.8    1.7  1  TIGR03194 4hydrxCoA_A: 4-hydroxybenzoyl-CoA reductase, alpha subunit
    1.3e-17   61.1   0.7    1.8e-17   60.6   0.5    1.0  1  TIGR02416 CO_dehy_Mo_lg: carbon-monoxide dehydrogenase, large subunit
    9.4e-11   38.3   0.5    4.2e-05   19.6   0.0    2.0  2  TIGR03311 Se_dep_Molyb_1: selenium-dependent molybdenum hydroxylase 1


Domain annotation for each model (and alignments):
>> TIGR02965  xanthine_xdhB: xanthine dehydrogenase, molybdopterin binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  340.9   2.5  5.2e-105    3e-102     430     755 ..       2     337 ..       1     339 [. 0.87

  Alignments for each domain:
  == domain 1    score: 340.9 bits;  conditional E-value: 5.2e-105
   TIGR02965 430 altPvkfGisftvthlnqaGalvhvytdGsillnhGGtemGqGlntkvaqvvaeefqvdldrvkitatdtdkvpntsataassGadlnGkaaqdaarqikerlvefaaekyqveeedvafeedevrvgeeelafeelvkkaylarvqlssaGfyk..tPk..ihwd...........rakgrGrpfyyfayGaavsevvvdtltGeykvlradilhdvGkslnpaidiGqveGafvqGmGWltteelvw........dekGrlrthaPstykiPavsdrPkdfnvrlleaaenaedtihrskavGePPlllglsvlsalkdavasvadykvlPk.......ldaPatpervlkave 755
                 a+ P k+Gi ft++++nq Galvh+ytdG++l+ hGGtemGqGl+tkvaqv a++f++ l +v+i+ t tdkv+nt +taas  +dl G+a+ da+rqi  rl                     +r +    +++ ++++a++arv+ls++Gfy+  t +    wd            +++rG+pf yf+ G   +ev vd+ltG+++v r+d+l dvG+++npaidiGq+eGaf qGmGW+tteel+w        +++Grl+t++P +ykiP  +d+P++fnv l+  + ++  t+h skavGePP+ lg +v++a+kda+a+    +  P+       l +Pat+er+ +a+ 
  MMETSP1137-20121227|6066_1   2 AIVPTKYGINFTAKFMNQGGALVHLYTDGTVLVTHGGTEMGQGLHTKVAQVAAKAFGLPLSKVHIAETATDKVANTQPTAASMSTDLYGMATLDACRQILARLEP-------------------IRKKMPDAPLAAVANAAFFARVDLSAHGFYAvdTKRcgYDWDaappplpdgtpDNAARGNPFNYFTQGVGFAEVEVDVLTGDHEVRRVDLLVDVGSAINPAIDIGQIEGAFTQGMGWVTTEELIWgdghhkwvQPAGRLHTQGPGAYKIPSFNDTPRKFNVSLMS-GVDNPFTVHSSKAVGEPPFFLGCTVFFAIKDAIAAARAEHLPPDaaatyfpLFSPATSERIRMACA 337
                 899************************************************************************************************999954...................34445567899999****************733444115666333333322223578******************************************************************9943333322347*****************************.666678*****************************9988887752222222667*******99975 PP

>> TIGR02969  mam_aldehyde_ox: aldehyde oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  299.8   0.0   1.2e-92   7.2e-90    1000    1313 ..       2     342 ..       1     354 [. 0.89

  Alignments for each domain:
  == domain 1    score: 299.8 bits;  conditional E-value: 1.2e-92
   TIGR02969 1000 aviplkfpvglgsvaagqaaalvhiyldgsvlvthggiemgqgvhtkmiqvvsrelkmpmsnvhlrgtstetvpntnasggsvvadlnglavkdacqtllkrlepiisknpkgtwkdwaqtafdksislsavgyfr......gyesninw.........ekgeghpfeyfvygaacseveidcltgdhknirtdivmdvgysinpaldigqvegafiqgmglytieelsy........spqgilysrgpnqykipaicdiptelhiallppseksntlysskglgesgvflgcsvffairdavsaarqer....glsgplklsspltpekirmacedkftk 1313
                  a++p k+ + ++++ + q  alvh+y dg+vlvthgg emgqg+htk+ qv ++ + +p+s+vh+  t+t+ v nt+ +  s+ +dl g+a  dac+ +l rlepi +k p+      a++af   ++lsa g++       gy+ +            +   g+pf+yf  g   +eve+d+ltgdh   r d+++dvg +inpa+digq+egaf qgmg  t eel +         p g l+++gp  ykip+  d p +++++l+   ++  t++ssk +ge   flgc+vffai+da++aar e        + + l sp t e+irmac d+f+ 
  MMETSP1137-20121227|6066_1    2 AIVPTKYGINFTAKFMNQGGALVHLYTDGTVLVTHGGTEMGQGLHTKVAQVAAKAFGLPLSKVHIAETATDKVANTQPTAASMSTDLYGMATLDACRQILARLEPIRKKMPDAPLAAVANAAFFARVDLSAHGFYAvdtkrcGYDWDAAPpplpdgtpdNAARGNPFNYFTQGVGFAEVEVDVLTGDHEVRRVDLLVDVGSAINPAIDIGQIEGAFTQGMGWVTTEELIWgdghhkwvQPAGRLHTQGPGAYKIPSFNDTPRKFNVSLMSGVDNPFTVHSSKAVGEPPFFLGCTVFFAIKDAIAAARAEHlppdAAATYFPLFSPATSERIRMACADRFAA 342 
                  89***********************************************************************************************************************************9953322235554432111111111134689***************************************************************97533333333699******************************************************************99744335667789******************75 PP

>> TIGR03313  Se_sel_red_Mo: probable selenate reductase, molybdenum-binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.6   0.2     1e-23     6e-21     658     913 ..      17     287 ..       1     316 [. 0.77

  Alignments for each domain:
  == domain 1    score: 71.6 bits;  conditional E-value: 1e-23
   TIGR03313 658 idqancmiklesdgtfivhsggadigtgldtvvakltaevlrcplddvhvisgdtdhalfdkgayassgtcfsgnaakkaaenlrekilfhgaemlgepvadvelaapglvrgkkgevsladiahkaetgtgfgsl...v..gtgsyitsela...fpyganfaevavntrtgeirldkfyalldcgtpvnpelalgqiygatlraighslteeivyddegi....p....ltrdlksygapkigdiprdfravlvps.ddkvgpygaksise 913
                 ++q  + ++l +dgt +v  gg+++g gl t va+++a+ +  pl++vh+    td+    + + as  t + g a+  a+ ++  ++     +m   p+a v  aa  + r  +    +  +  k  +g  +      +  gt    +       f  g  faev v++ tg+  + +   l+d+g+ +np + +gqi ga  + +g   tee+++ d  +    p     t+   +y  p   d pr+f+  l+   d++   + +k++ e
  MMETSP1137-20121227|6066_1  17 MNQGGALVHLYTDGTVLVTHGGTEMGQGLHTKVAQVAAKAFGLPLSKVHIAETATDKVANTQPTAASMSTDLYGMATLDACRQILARLEPIRKKMPDAPLAAVANAA-FFARVDLSAHGFYAVDTK-RCGYDWDAApppLpdGTPDNAARGNPfnyFTQGVGFAEVEVDVLTGDHEVRRVDLLVDVGSAINPAIDIGQIEGAFTQGMGWVTTEELIWGDGHHkwvqPagrlHTQGPGAYKIPSFNDTPRKFNVSLMSGvDNPFTVHSSKAVGE 287
                 6789999*************************************************************************999999999999999999999887654.456667777777776665.4666676541111113333333222211266799*******************************************************9765441222311113555567888999*******9988765155666666666655 PP

>> TIGR03196  pucD: xanthine dehydrogenase D subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.0   0.1   4.1e-22   2.4e-19     459     738 ..      20     306 ..       2     313 .. 0.76

  Alignments for each domain:
  == domain 1    score: 67.0 bits;  conditional E-value: 4.1e-22
   TIGR03196 459 ararlelaeeGtvkvrlssafeevGqGilaiieqivreelGv..edvvlviadtakvs.aGsssasrqtsmvggavrrlkkavldrlkkrvartaGlpaevveasartlivnaaelvrvekalvvtlkelledGpleeetafhdrrtsaldavGqgdghvlyaaaaaavvvevdldlGlvklvdmelaidaGtvlsplalrGqveGGaaqalGlalmeelktvdGvv..v..aetld.....dyllptikdvpdldlvavedl..qkddvyGvkGvGeig...tiaitpaivkavrv 738
                  +a ++l  +Gtv v+   +  e+GqG+ + + q++ + +G    +v ++ + t kv+ +  ++as  t + g a   +++ +l+rl     ++   p           ++naa + rv+ +    ++   +    + + a    +  + d   +g++   ++ +   ++vevd+++G+  +  ++l +d+G+ ++p    Gq+eG  +q++G+   eel   dG    v  a  l+      y +p+ +d p    v++      +  v+  k vGe +    +++  ai  a+  
  MMETSP1137-20121227|6066_1  20 GGALVHLYTDGTVLVT--HGGTEMGQGLHTKVAQVAAKAFGLplSKVHIAETATDKVAnTQPTAASMSTDLYGMATLDACRQILARLEPIRKKMPDAPLA--------AVANAAFFARVDLSAHGFYAVDTKRCGYDWDAAPPPLPDGTPDNAARGNPFNYFTQGVGFAEVEVDVLTGDHEVRRVDLLVDVGSAINPAIDIGQIEGAFTQGMGWVTTEELIWGDGHHkwVqpAGRLHtqgpgAYKIPSFNDTPRKFNVSLMSGvdNPFTVHSSKAVGEPPfflGCTVFFAIKDAIAA 306
                 37888999***77665..6889*******************98899999999999999788999***********************9776666653322........244555555665555555555555555555555555555544888899********************************************************************964224124456633333699*******986666665541134578889999998733335555565555554 PP

>> TIGR03194  4hydrxCoA_A: 4-hydroxybenzoyl-CoA reductase, alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.7   0.8   6.7e-20   3.9e-17     447     711 ..      22     288 ..       6     315 .. 0.76

  Alignments for each domain:
  == domain 1    score: 59.7 bits;  conditional E-value: 6.7e-20
   TIGR03194 447 valkvdfdggitlltGaadiGqGsstivaqvvaevlGvrlerlrviaadsaltPkdnGayssrvtfmvGnaaidaaeelkkvlvaaaakklevaeedievleevilvkssedkalsfeevvkkalvdkGaltvkGtytcPpelqGgkkrGaavGstmg.fsyaaqvvevsvdeetGkvtvekvwaaldcGkainPlaveGqvqGavymGmGqalseetvyddGrikaaell.........dyrlptivesP.dieveivesld.PnGPfGakeaseG 711
                 + +++  dg++ +  G +++GqG +t vaqv+a+++G+ l+++++  + ++     + + +s  t + G a+ da++++ + l  +  k+ +   + +  + ++++ +  +  a +f  v  k              ++Pp l  g    aa G     f+ +   +ev vd  tG   v++v   +d+G ainP    Gq++Ga   GmG   +ee ++ dG++k ++ +          y++p+  ++P + +v+++  +d P+  +  k ++e 
  MMETSP1137-20121227|6066_1  22 ALVHLYTDGTVLVTHGGTEMGQGLHTKVAQVAAKAFGLPLSKVHIAETATDKVANTQPTAASMSTDLYGMATLDACRQILARLEPIRKKMPD---APLAAVANAAFFARVDLSAHGFYAVDTKRCG-------YDWDAAPPPLPDGTPDNAARGNPFNyFTQGVGFAEVEVDVLTGDHEVRRVDLLVDVGSAINPAIDIGQIEGAFTQGMGWVTTEELIWGDGHHKWVQPAgrlhtqgpgAYKIPSFNDTPrKFNVSLMSGVDnPFTVHSSKAVGEP 288
                 4567889*****************************************9999999999*****************99887777666665555...5566666666666666677788887666543.......3344568888888899999998766246677789********************************************************998765321111222224666666666633556666555435555555666655 PP

>> TIGR02416  CO_dehy_Mo_lg: carbon-monoxide dehydrogenase, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.6   0.5     3e-20   1.8e-17     479     758 ..      23     312 ..      14     320 .. 0.77

  Alignments for each domain:
  == domain 1    score: 60.6 bits;  conditional E-value: 3e-20
   TIGR02416 479 eirihptgsaiarlgtksqgqghettyaqiiatelgipaedidveegdtdtapyglgtygsrstpvagaaialaarkikakakiiaahmlevseadlewdvdrfkvkgdpskfktladi.alraynalpeglepgl.eavnyydpsnltypfgaylcvvdidvdtgvvkvrrfyalddcgtrinpmiiegqihggltegiavalgqeiafde........qgnvlgaslmdyllptavetp.kfetdy.tvtpsphhpigakgvgesahvgsvpavsnavvdalaflgvrhl 758
                  + ++  g++++  g +  gqg +t  aq+ a+ +g+p  ++++ e  td+      t  s st   g a+  a r+i a+ + i  +m ++  a +       +v    + f ++        ++a p+ l  g  +     +p n  +  g+ +  v++dv tg   vrr   l d g+ inp i  gqi g +t+g++   ++e+ + +         g +  +    y +p+  +tp kf+    +    p     +k vge +   +   v  a+ da+a   ++hl
  MMETSP1137-20121227|6066_1  23 LVHLYTDGTVLVTHGGTEMGQGLHTKVAQVAAKAFGLPLSKVHIAETATDKVANTQPTAASMSTDLYGMATLDACRQILARLEPIRKKMPDAPLAAVANAAFFARVDLSAHGFYAVDTKrCGYDWDAAPPPLPDGTpDNAARGNPFNY-FTQGVGFAEVEVDVLTGDHEVRRVDLLVDVGSAINPAIDIGQIEGAFTQGMGWVTTEELIWGDghhkwvqpAGRLHTQGPGAYKIPSFNDTPrKFNVSLmSGVDNPFTVHSSKAVGEPPFFLGCT-VFFAIKDAIAAARAEHL 312
                 567788999*************************************************************************************999887777777777777776643312234556666666665166666777775.789*************************************************9999998875411111111233334444455566655555334444312345566666777777777766654.44689999999988886 PP

>> TIGR03311  Se_dep_Molyb_1: selenium-dependent molybdenum hydroxylase 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.1   4.5e-07   0.00027     602     678 ..      28     104 ..      17     113 .. 0.91
   2 !   19.6   0.0   7.2e-08   4.2e-05     714     769 ..     174     230 ..     157     245 .. 0.83

  Alignments for each domain:
  == domain 1    score: 17.0 bits;  conditional E-value: 4.5e-07
   TIGR03311 602 edGkvhirtsaaciGqGletvltqivcetlgllpevivlelpdtkltpdsGtttasrqslftGeatrraaaklkeal 678
                 +dG v +    + +GqGl+t + q+++++ gl+  ++ +  + t    ++  t+as  + + G at  a+ ++  +l
  MMETSP1137-20121227|6066_1  28 TDGTVLVTHGGTEMGQGLHTKVAQVAAKAFGLPLSKVHIAETATDKVANTQPTAASMSTDLYGMATLDACRQILARL 104
                 6999**********************************999*************************99998876665 PP

  == domain 2    score: 19.6 bits;  conditional E-value: 7.2e-08
   TIGR03311 714 aygya.tqvvilddkGkvekvvaaydvGrainplnleGqieGGivmGlGyaltedfp 769
                 + g+a  +v +l  +  v +v    dvG ainp    GqieG    G+G+  te+  
  MMETSP1137-20121227|6066_1 174 GVGFAeVEVDVLTGDHEVRRVDLLVDVGSAINPAIDIGQIEGAFTQGMGWVTTEELI 230
                 45566358999*******************************************865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (490 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        70  (0.0170648); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.59u 0.16s 00:00:00.75 Elapsed: 00:00:00.81
# Mc/sec: 798.45
//
Query:       MMETSP1137-20121227|6067_1  [L=131]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.026   11.8   0.0      0.036   11.4   0.0    1.2  1  TIGR01581 Mo_ABC_porter: NifC-like ABC-type porter


Domain annotation for each model (and alignments):
>> TIGR01581  Mo_ABC_porter: NifC-like ABC-type porter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   8.8e-06     0.036      57      81 ..      59      83 ..      47      93 .. 0.83

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 8.8e-06
   TIGR01581 57 klldtllelPlvlPplVaGiaLLll 81
                + ldtll+ P++lPp+  G++L + 
  MMETSP1137-20121227|6067_1 59 RKLDTLLNAPVALPPITRGLSLAFH 83
                568*****************99665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (131 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        57  (0.0138957); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.15u 0.13s 00:00:00.28 Elapsed: 00:00:00.28
# Mc/sec: 617.52
//
Query:       MMETSP1137-20121227|6068_1  [L=75]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (75 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        82  (0.0199902); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.15s 00:00:00.27 Elapsed: 00:00:00.30
# Mc/sec: 329.97
//
Query:       MMETSP1137-20121227|6069_1  [L=224]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (224 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        60  (0.014627); expected 82.0 (0.02)
Passed bias filter:                       37  (0.00901999); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.18s 00:00:00.39 Elapsed: 00:00:00.42
# Mc/sec: 703.94
//
Query:       MMETSP1137-20121227|6070_1  [L=309]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0015   15.2   0.1        0.2    8.3   0.0    2.1  2  TIGR01942 pcnB: poly(A) polymerase
     0.0017   14.9   0.1      0.016   11.7   0.0    1.9  2  TIGR02692 tRNA_CCA_actino: CCA tRNA nucleotidyltransferase


Domain annotation for each model (and alignments):
>> TIGR01942  pcnB: poly(A) polymerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.9   0.0     0.001       2.1      33      54 ..      83     106 ..      81     110 .. 0.83
   2 !    8.3   0.0   9.7e-05       0.2     109     136 ..     191     217 ..     178     228 .. 0.79

  Alignments for each domain:
  == domain 1    score: 4.9 bits;  conditional E-value: 0.001
   TIGR01942  33 YivGGa..vRDLllgiePKDFDva 54 
                 Y+ GGa    DLllg +P D Dv+
  MMETSP1137-20121227|6070_1  83 YLSGGAgtYXDLLLGEQPNDLDVS 106
                 7777653378************97 PP

  == domain 2    score: 8.3 bits;  conditional E-value: 9.7e-05
   TIGR01942 109 kdnvyGsleEDalRRDFtvnaLyYDpsk 136
                 + +v Gs++ DalRRD t+ a+   +++
  MMETSP1137-20121227|6070_1 191 R-DVRGSAQQDALRRDLTIGAMLLHVTR 217
                 4.499***************98766655 PP

>> TIGR02692  tRNA_CCA_actino: CCA tRNA nucleotidyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.0     0.015        31      30      57 ..      82     111 ..      77     174 .. 0.71
   2 !   11.7   0.0   7.7e-06     0.016      94     136 ..     176     218 ..     164     244 .. 0.86

  Alignments for each domain:
  == domain 1    score: 0.9 bits;  conditional E-value: 0.015
   TIGR02692  30 lylvGG..svrdallgrlgkdldfttdarp 57 
                 lyl GG  +  d llg++ +dld++   r 
  MMETSP1137-20121227|6070_1  82 LYLSGGagTYXDLLLGEQPNDLDVSICLRD 111
                 78888622578************9865554 PP

  == domain 2    score: 11.7 bits;  conditional E-value: 7.7e-06
   TIGR02692  94 tfrsdaydrtsrkpevefGdtleedlirrdftvnalavrvaad 136
                 t  ++ yd+  r p      + ++d +rrd+t+ a+ ++v+ +
  MMETSP1137-20121227|6070_1 176 TIGAERYDECDRVPFRDVRGSAQQDALRRDLTIGAMLLHVTRT 218
                 677999*********9999*********************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (309 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        66  (0.0160897); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.26u 0.11s 00:00:00.37 Elapsed: 00:00:00.51
# Mc/sec: 799.70
//
Query:       MMETSP1137-20121227|6071_1  [L=94]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (94 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        37  (0.00901999); expected 82.0 (0.02)
Passed bias filter:                       32  (0.00780107); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.17s 00:00:00.33 Elapsed: 00:00:00.62
# Mc/sec: 200.11
//
Query:       MMETSP1137-20121227|6072_1  [L=85]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (85 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        63  (0.0153584); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.13s 00:00:00.26 Elapsed: 00:00:00.27
# Mc/sec: 415.52
//
Query:       MMETSP1137-20121227|6073_1  [L=505]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (505 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        57  (0.0138957); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.14s 00:00:00.45 Elapsed: 00:00:00.48
# Mc/sec: 1388.64
//
Query:       MMETSP1137-20121227|6074_1  [L=45]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (45 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        19  (0.00463189); expected 82.0 (0.02)
Passed bias filter:                       19  (0.00463189); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.16s 00:00:00.27 Elapsed: 00:00:00.28
# Mc/sec: 212.13
//
Query:       MMETSP1137-20121227|6075_1  [L=436]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.5e-79  263.2   0.0    1.1e-78  262.7   0.0    1.1  1  TIGR00233 trpS: tryptophan--tRNA ligase
    1.5e-05   22.1   0.0    5.3e-05   20.3   0.0    1.8  2  TIGR00234 tyrS: tyrosine--tRNA ligase


Domain annotation for each model (and alignments):
>> TIGR00233  trpS: tryptophan--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  262.7   0.0   5.2e-82   1.1e-78       2     307 ..     100     400 ..      99     411 .. 0.97

  Alignments for each domain:
  == domain 1    score: 262.7 bits;  conditional E-value: 5.2e-82
   TIGR00233   2 kkrvltGiqpsG.klhlGnylgairtkveq.qeevelfiqvaDlhaitvkkltdeealrkaveelvadilAvGlDpekttiflqsevp.ehselavllskkvtlgelkritqfkdksqeenvsiGllsypvlqaAdiLlyqad...........lVPvgeDqkqhleltRdlaerfnkkfkkvfklPelliskffarlmglqdkKMSkSdpnsaIfLtdepkeikkKikkaatdsgretleeerekpgvpellviyellskeeeddkkleedlekeksgkllygelKkalievlqeflkelqekreevaeeeldkileag 307
                 + +++tG++ps+ +lhlG+++++++tk++q ++ ++l++q++D++++++k+lt e+a  +  ++          D+  t if++ ++  +++ ++v ++k vt +++k i++f d+      +iG+  +p++qaA+++ ++++           l+P+++Dq++++++tRd+a r+       f++P+l++skff++l+g ++ KMS+Sd+nsaIf td++ +ik+K++k+a+++gr+t+ee+r+ +g+ e +  y++l++++ dd+kl+++ +++ sg +l ge+K +li+vlq +++++q+ r+ v+++ ++ ++++ 
  MMETSP1137-20121227|6075_1 100 PMYLYTGRGPSSeALHLGHLVPFMFTKYLQdVFRCPLVVQMTDDEKFLWKDLTLEDATASHSKT-------QRXDISRTLIFSDLDYIgHMYGNVVKIQKAVTYNQVKGIFGFDDSV-----NIGKHAFPAIQAAPSFPTSFPhifgtradvpcLIPCAIDQDPYFRMTRDVAPRLG------FRKPALIHSKFFPALQGSTG-KMSASDENSAIFCTDSNAQIKNKVNKYAFSGGRVTVEEHRQFGGNLETDIPYQWLNFFLFDDEKLKQIGDDYSSGRMLSGEIKAELIKVLQPLVSKHQQARSLVTDDVVKAFMTPR 400
                 679*********99*************************************9999999988888.......4479************978899**********************99.....*******************************************************......*****************999.*****************************************************************************************************************984 PP

>> TIGR00234  tyrS: tyrosine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   0.0   2.6e-08   5.3e-05      29      65 ..      94     130 ..      75     136 .. 0.84
   2 ?   -2.6   0.0      0.23   4.6e+02     227     266 ..     282     309 ..     257     319 .. 0.63

  Alignments for each domain:
  == domain 1    score: 20.3 bits;  conditional E-value: 2.6e-08
   TIGR00234  29 klkkneklklylGvdPtaqslHlGhlvplkkLrdfqq 65 
                     ++++ ly+G  P+++ lHlGhlvp++  + +q+
  MMETSP1137-20121227|6075_1  94 NFAAKKPMYLYTGRGPSSEALHLGHLVPFMFTKYLQD 130
                 44457899**********************9998886 PP

  == domain 2    score: -2.6 bits;  conditional E-value: 0.23
   TIGR00234 227 adGekmGkseggavsldesspydfyqkvintpdelvkkil 266
                 ++G         ++s++++   ++ ++  +++ ++++k++
  MMETSP1137-20121227|6075_1 282 STG---------KMSASDE---NSAIFCTDSNAQIKNKVN 309
                 444.........4444444...444444444444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (436 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        74  (0.01804); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.30u 0.15s 00:00:00.44 Elapsed: 00:00:00.45
# Mc/sec: 1278.83
//
Query:       MMETSP1137-20121227|6076_1  [L=152]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (152 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        54  (0.0131643); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.14s 00:00:00.30 Elapsed: 00:00:00.31
# Mc/sec: 647.17
//
Query:       MMETSP1137-20121227|6077_1  [L=470]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.1e-21   74.0   0.0    1.4e-19   68.1   0.0    2.1  2  TIGR01979 sufS: cysteine desulfurase, SufS family
    5.2e-08   30.4   1.3    2.6e-07   28.1   1.0    1.9  2  TIGR01976 am_tr_V_VC1184: cysteine desulfurase family protein
    1.9e-07   28.5   0.1    4.9e-06   23.8   0.0    2.1  2  TIGR03392 FeS_syn_CsdA: cysteine desulfurase, catalytic subunit CsdA
    3.2e-06   24.2   0.0    0.00027   17.9   0.0    2.2  2  TIGR01977 am_tr_V_EF2568: cysteine desulfurase family protein
  ------ inclusion threshold ------
      0.013   12.1   0.0      0.018   11.6   0.0    1.1  1  TIGR01326 OAH_OAS_sulfhy: O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase


Domain annotation for each model (and alignments):
>> TIGR01979  sufS: cysteine desulfurase, SufS family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.1   0.0   1.7e-22   1.4e-19      20     310 ..      72     372 ..      65     381 .. 0.84
   2 !    3.7   0.0    0.0062       5.1     374     397 ..     422     445 ..     403     448 .. 0.87

  Alignments for each domain:
  == domain 1    score: 68.1 bits;  conditional E-value: 1.7e-22
   TIGR01979  20 vYLDsaatsqkPkaVidaveeyyeksnanvhRgvhtlseeateayeeaRekvakfinAk.saeeivftkgateslNlvaaslgesslkegdeivvseleHHanivpwqllakrkgaklkvieldedgtldleeleelltektklvaithvsNvlGtvnpveeiiklahevgalvlvDgaqav..phlkvdvkeldvDflvfsgHK.llgptGiGvLygkkelLeklpPfeg......GGemieevsleestyae....lPlkfEaGtpniagvv.glgaaieylekiglekieakekeltayaler 310
                 vY+Dsa  +  P + +   e    ++ a+     +    +a +  +++Re+ a +++A  +a++i ++ +++ ++ l a++l+++ +++   ++v e + H+n+++wq l++r+g +l ++   +dg      l++l  + + + a+       G++ ++  + +  ++ ++ +++D++q+       +  k+l++  ++ s HK llgp G  +Ly+ ++l e+  P+e       G +++e   + ++ y e      +++++G  +   v+  l+++++ + ++g+++i+++ +e+t+   er
  MMETSP1137-20121227|6077_1  72 VYFDSAGRTPTPLSTLRVGEAALLRKAATP----W-SIGDAVQMRNDVRERYAALLGAGvCAQDIAVVPSCSYAMSLAANMLSHKLVASRCAVLVLEGQNHSNVMAWQVLCRRRGGDLAIVARPADGDWARAVLSRLNANDVAVCALPPCHWCDGAIIDLVAVSEACKSLDVSLVIDATQSSdgAGGVLHAKALGAAVVASSIHKwLLGPYGAALLYVDAALYETATPLEHhdrnreGADLVECLPMGDAGYPEgfmpGAQRLDSGGRPSYIVMpMLRNSLDLILDLGVQRIADTLREITSKIRER 372
                 677777777777766665555554444432....2.23467777899***********83579*********************************************************************************************************************98224568999**************779****************999987433334499****99999876654221156899987766555552678999**********999999999887776 PP

  == domain 2    score: 3.7 bits;  conditional E-value: 0.0062
   TIGR01979 374 taRaslalYnteedvdalvealkk 397
                  +R+s +l nt +d+d l+eal++
  MMETSP1137-20121227|6077_1 422 AIRISPYLHNTDADLDCLLEALEN 445
                 68*******************987 PP

>> TIGR01976  am_tr_V_VC1184: cysteine desulfurase family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.1   1.0   3.2e-10   2.6e-07      18     228 ..      70     279 ..      63     322 .. 0.83
   2 ?   -0.4   0.0      0.14   1.2e+02     375     401 .]     417     443 ..     399     443 .. 0.86

  Alignments for each domain:
  == domain 1    score: 28.1 bits;  conditional E-value: 3.2e-10
   TIGR01976  18 dvvflDnpaGtqvPqsvldavsaaltrsnanrggayessrkadqvvddAreavadllnaesp.eevvlGanatslafllsralartl.gpgdEvivtrldheaNispWlqaaedagakvkwaevdeadgeleeadlaallsdrTRLVAvtaasnllGsivdlaaltelvhaaGalvvvDavhy..aphaliDvqalgaDllvcsaykffgPhlGi 228
                 + v++D+++ t +P s l    aal r+ a+          a q+ +d re  a+ll+a    +++++ ++ +  ++l ++ l+++l   +  v+v + ++++N+ +W+ + ++ g ++  + ++ adg+   a l  l ++     A+       G+i dl a+ e+ ++    +v+Da +   ++ +++  +alga +++ s +k++  + G+
  MMETSP1137-20121227|6077_1  70 NAVYFDSAGRTPTPLSTLRVGEAALLRKAATPWS----IGDAVQMRNDVRERYAALLGAGVCaQDIAVVPSCSYAMSLAANMLSHKLvASRCAVLVLEGQNHSNVMAWQVLCRRRGGDLAIV-ARPADGDWARAVLSRLNANDVAVCALPPCHWCDGAIIDLVAVSEACKSLDVSLVIDATQSsdGAGGVLHAKALGAAVVASSIHKWLLGPYGA 279
                 579****************9999**999887644....4567889999***********8651678888888777777777788665267889999999*******************9876.6888*****************************************************987225679******************97444443 PP

  == domain 2    score: -0.4 bits;  conditional E-value: 0.14
   TIGR01976 375 eaeeGvvrvglahYntaeevdklleal 401
                  +  G++r++    nt +++d lleal
  MMETSP1137-20121227|6077_1 417 AERFGAIRISPYLHNTDADLDCLLEAL 443
                 55679*******************997 PP

>> TIGR03392  FeS_syn_CsdA: cysteine desulfurase, catalytic subunit CsdA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.8   0.0     6e-09   4.9e-06      12     241 ..      66     294 ..      61     302 .. 0.81
   2 ?    2.5   0.0     0.017        14     367     393 ..     421     447 ..     373     450 .. 0.90

  Alignments for each domain:
  == domain 1    score: 23.8 bits;  conditional E-value: 6e-09
   TIGR03392  12 alqdktvyldsaatalkpqavieatqdfyrlesatvhrsqykealsltaryeaareqvaellnas.daenivwtrGtteslnlvaqsyarprlqpedeiivseaehhanlipwlmvaeqtGakvvklplgadklpdiellpelltkktrllalsqmsnvtGGapdlariialahkagavvvvd......GaqGvvhlpadvqaldidfyafsghk.lygptGiGvlyGktelleampp 241
                  l+ ++vy+dsa  +  p + +   +    +++at    +  +a  +  r ++ re+ a ll a   a++i     ++ ++ l a+      +     ++v e + h+n++ w ++ ++ G  +  +   ad       l++l ++   + al       G + dl ++ + +++ ++ +v+d      Ga Gv+h++    al     a s hk l gp G  +ly  ++l e+ +p
  MMETSP1137-20121227|6077_1  66 RLSRNAVYFDSAGRTPTPLSTLRVGEAALLRKAATPW--SIGDA--VQMR-NDVRERYAALLGAGvCAQDIAVVPSCSYAMSLAANMLSHKLVASRCAVLVLEGQNHSNVMAWQVLCRRRGGDLAIVARPADGDWARAVLSRLNANDVAVCALPPCHWCDGAIIDLVAVSEACKSLDVSLVIDatqssdGAGGVLHAK----ALGAAVVASSIHKwLLGPYGAALLYVDAALYETATP 294
                 5777888888888888888888877777766666643..22333..3334.578999*****99725899999999***********999999999************************9976665555666667889*************************************9999986222222666777765....566778999***9789*************9998776 PP

  == domain 2    score: 2.5 bits;  conditional E-value: 0.017
   TIGR03392 367 Gtlrasfapyntkqdvdalveavkkal 393
                 G++r s   +nt +d d l+ea+++al
  MMETSP1137-20121227|6077_1 421 GAIRISPYLHNTDADLDCLLEALENAL 447
                 8999999999**************998 PP

>> TIGR01977  am_tr_V_EF2568: cysteine desulfurase family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.0   3.3e-07   0.00027      82     214 ..     152     286 ..     102     297 .. 0.75
   2 !    4.2   0.0    0.0049         4     346     374 ..     416     444 ..     406     446 .. 0.87

  Alignments for each domain:
  == domain 1    score: 17.9 bits;  conditional E-value: 3.3e-07
   TIGR01977  82 ilkegkhvittslEHnaVlRpleklkeelgvevtivkaeeeglvdvekikkaikkdtklivlshaSNvtGtilpieeiaelakekgilflvDaaqta.Gvl.eidveklaidllaftGHKgLlgpqGiggllike 214
                 ++ + + v++     ++ +   + l  ++g +++iv+   +g      + +   +d ++  l       G+i+++  ++e +k  ++ +++Da+q+  G    ++++ l  +++a + HK Llgp G + l+++ 
  MMETSP1137-20121227|6077_1 152 LVASRCAVLVLEGQNHSNVMAWQVLCRRRGGDLAIVARPADGDWARAVLSRLNANDVAVCALPPCHWCDGAIIDLVAVSEACKSLDVSLVIDATQSSdGAGgVLHAKALGAAVVASSIHKWLLGPYGAALLYVDA 286
                 555666666655555555556677777778899999999999999999999999999999999999999**************************853332136778899999*****************99975 PP

  == domain 2    score: 4.2 bits;  conditional E-value: 0.0049
   TIGR01977 346 gtlatGtiRlslgyfnteeeieklvealk 374
                  +   G+iR+s   +nt+++++ l+eal+
  MMETSP1137-20121227|6077_1 416 VAERFGAIRISPYLHNTDADLDCLLEALE 444
                 55677**********************97 PP

>> TIGR01326  OAH_OAS_sulfhy: O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   2.2e-05     0.018     157     207 ..     222     275 ..     186     287 .. 0.89

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 2.2e-05
   TIGR01326 157 dvlDiekvaevakkagvplivDntvatp...ylvrPlehGadivvhsatkylgG 207
                 +++D+ +v+e+ k+ +v+l++D t ++     +++    Ga +v  s+ k+l G
  MMETSP1137-20121227|6077_1 222 AIIDLVAVSEACKSLDVSLVIDATQSSDgagGVLHAKALGAAVVASSIHKWLLG 275
                 699*********************97532237889999*************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (470 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       110  (0.0268162); expected 82.0 (0.02)
Passed bias filter:                       98  (0.0238908); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.40u 0.20s 00:00:00.60 Elapsed: 00:00:00.52
# Mc/sec: 1192.98
//
Query:       MMETSP1137-20121227|6078_1  [L=101]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        50  (0.0121892); expected 82.0 (0.02)
Passed bias filter:                       34  (0.00828864); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.13s 00:00:00.26 Elapsed: 00:00:00.35
# Mc/sec: 380.88
//
Query:       MMETSP1137-20121227|6079_1  [L=244]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.1e-18   62.6   9.4    7.7e-18   62.3   6.5    1.1  1  TIGR00400 mgtE: magnesium transporter


Domain annotation for each model (and alignments):
>> TIGR00400  mgtE: magnesium transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.3   6.5   1.9e-21   7.7e-18     304     447 ..      85     227 ..      75     230 .. 0.94

  Alignments for each domain:
  == domain 1    score: 62.3 bits;  conditional E-value: 1.9e-21
   TIGR00400 304 syedvlkkvvaLaafiPllidasGnaGaqssavvirgLakeevkvkdvlkvilreirvsilvGavlavvvavvavflqgdllvafvvassLfvsllvaklaGgllPivlkklkldPalmsgPlittladvlslliylniakall 447
                 s e +l++  a+  f+ +l++a+GnaG qs+  +irgLa++ev+  +    +l e+r+++ + +vl    +v+++ +   +  a+ ++ sLf ++  + ++G++lP+vl  + +dPa +s+  i  + d+l++li   +++ l+
  MMETSP1137-20121227|6079_1  85 SNEMLLQEHPAVIYFLTMLVGAGGNAGNQSAVRIIRGLATGEVNPSSAASFMLVELRMALAIALVLVAAGFVRVIAFNVAMADALALSFSLFAIVGSSVVLGAGLPLVLDAVGIDPAHAST-TIQVVMDILGVLITCAVSTLLF 227
                 567789999999*********************************************************************************************************9887.6899*********998888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (244 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       284  (0.0692345); expected 82.0 (0.02)
Passed bias filter:                      129  (0.0314481); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.23u 0.18s 00:00:00.41 Elapsed: 00:00:00.44
# Mc/sec: 731.94
//
Query:       MMETSP1137-20121227|6080_1  [L=376]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.025   12.8   1.8        1.7    6.9   0.0    3.1  3  TIGR01557 myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class


Domain annotation for each model (and alignments):
>> TIGR01557  myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0      0.19     8e+02       3      27 ..     185     208 ..     184     212 .. 0.77
   2 ?    3.7   0.1    0.0041        17       3      35 ..     268     296 ..     266     307 .. 0.88
   3 ?    6.9   0.0   0.00042       1.7       4      26 ..     323     344 ..     320     360 .. 0.88

  Alignments for each domain:
  == domain 1    score: -1.7 bits;  conditional E-value: 0.19
   TIGR01557   3 rvvWteelhrrFlqAvqklGgedka 27 
                 r+ W ++++ +   +v   G  ++a
  MMETSP1137-20121227|6080_1 185 RLNWRPDEDAVIRAVVTAHGN-QWA 208
                 889999999887777776666.775 PP

  == domain 2    score: 3.7 bits;  conditional E-value: 0.0041
   TIGR01557   3 rvvWteelhrrFlqAvqklGgedkatPkkIlel 35 
                 r++W  +++r   + + + G+ d+   +kI+++
  MMETSP1137-20121227|6080_1 268 RIKWRADEDRLIFDIIAQKGR-DW---RKIAQM 296
                 899******************.**...999765 PP

  == domain 3    score: 6.9 bits;  conditional E-value: 0.00042
   TIGR01557   4 vvWteelhrrFlqAvqklGgedk 26 
                  +Wt+ +++  +  vq+lG+  +
  MMETSP1137-20121227|6080_1 323 GCWTSAEDQLIMASVQELGK-MW 344
                 58*****************9.66 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (376 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        68  (0.0165773); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.27u 0.14s 00:00:00.41 Elapsed: 00:00:00.37
# Mc/sec: 1341.29
//
Query:       MMETSP1137-20121227|6081_1  [L=203]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (203 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        67  (0.0163335); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.13s 00:00:00.31 Elapsed: 00:00:00.31
# Mc/sec: 864.32
//
Query:       MMETSP1137-20121227|6082_1  [L=203]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.2e-06   25.0   0.1    0.00044   17.4   0.0    2.1  2  TIGR00601 rad23: UV excision repair protein Rad23


Domain annotation for each model (and alignments):
>> TIGR00601  rad23: UV excision repair protein Rad23
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.0   1.1e-07   0.00044     102     204 ..       8     120 ..       1     143 [. 0.59
   2 !    5.9   0.0   0.00033       1.4     133     178 ..     155     200 ..     145     202 .. 0.80

  Alignments for each domain:
  == domain 1    score: 17.4 bits;  conditional E-value: 1.1e-07
   TIGR00601 102 tpasvaekksaaPasaveeessaeeeatatalesedtsaesegdsdre......tlvvGsere....etveeimemGyereeverAlRAafnnPdRAveYLltGiPedleaae 204
                  p s a++ ++a a +v  + s+   +   a  + ++ ++  g  d +      + + Gse e    + ++++m+mG+ r++ + Al  +  + d A+  Ll G P d++a  
  MMETSP1137-20121227|6082_1   8 APLSSATSGVNAAACTVGIDASSAALNGGGAHGNGSGCGSGYGGPDGSadgspdGSARGSESEasgaNELKQLMDMGFSRDQASGALELSGFDVDNAISLLLGGAPVDANAGS 120
                 3334444444444444433333333333333333333333222221112233335555555542222679********************99**************9998654 PP

  == domain 2    score: 5.9 bits;  conditional E-value: 0.00033
   TIGR00601 133 lesedtsaesegdsdretlvvGsereetveeimemGyereeverAl 178
                  ++ +t ++    s+r  + + + +   v++++emG+ +e+   Al
  MMETSP1137-20121227|6082_1 155 GSNASTGSPLRQASSRRHFEAPAVLPPKVTQLVEMGFSKEQAATAL 200
                 4555666666677888889999999999*************99998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (203 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       115  (0.0280351); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.24u 0.15s 00:00:00.39 Elapsed: 00:00:00.37
# Mc/sec: 724.16
//
Query:       MMETSP1137-20121227|6083_1  [L=1625]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.6e-51  173.4   0.0    2.9e-27   93.2   0.0    4.2  4  TIGR00376 TIGR00376: putative DNA helicase
    0.00014   18.4   0.0    0.00046   16.7   0.0    1.8  2  TIGR01447 recD: exodeoxyribonuclease V, alpha subunit
    0.00016   18.8   0.0    0.00033   17.8   0.0    1.4  1  TIGR01420 pilT_fam: twitching motility protein
    0.00035   17.2   0.0    0.00062   16.4   0.0    1.3  1  TIGR02533 type_II_gspE: general secretory pathway protein E
     0.0015   15.9   0.0     0.0042   14.5   0.0    1.7  1  TIGR03420 DnaA_homol_Hda: DnaA regulatory inactivator Hda
     0.0054   13.2   0.0     0.0093   12.4   0.0    1.3  1  TIGR02538 type_IV_pilB: type IV-A pilus assembly ATPase PilB
     0.0061   14.0   0.0      0.013   12.9   0.0    1.5  1  TIGR02982 heterocyst_DevA: ABC exporter ATP-binding subunit, DevA family
     0.0096   11.7   0.0       0.88    5.2   0.0    2.5  3  TIGR01448 recD_rel: helicase, RecD/TraA family
  ------ inclusion threshold ------
      0.016   12.5   0.0       0.03   11.6   0.0    1.3  1  TIGR03015 pepcterm_ATPase: putative secretion ATPase, PEP-CTERM locus subfamily
      0.058   10.2   0.1      0.096    9.5   0.0    1.2  1  TIGR00635 ruvB: Holliday junction DNA helicase RuvB
       0.25    7.3   0.1       0.36    6.8   0.0    1.1  1  TIGR00929 VirB4_CagE: type IV secretion/conjugal transfer ATPase, VirB4 family


Domain annotation for each model (and alignments):
>> TIGR00376  TIGR00376: putative DNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.7   0.0   0.00029      0.11     172     195 ..     917     940 ..     815     948 .. 0.74
   2 !   93.2   0.0   7.7e-30   2.9e-27     336     517 ..    1190    1381 ..    1180    1392 .. 0.73
   3 ?    3.5   0.0     0.011       4.1     531     550 ..    1430    1449 ..    1427    1458 .. 0.84
   4 !   62.0   0.1   2.1e-20   7.8e-18     556     633 ..    1494    1570 ..    1487    1576 .. 0.91

  Alignments for each domain:
  == domain 1    score: 8.7 bits;  conditional E-value: 0.00029
   TIGR00376 172 sskdlaliHGPpGtGktrtlvEli 195
                  ++ ++l+ GPpGtGkt+ l  l+
  MMETSP1137-20121227|6083_1 917 RHEGFVLVQGPPGTGKTTLLLALL 940
                 45689************9887665 PP

  == domain 2    score: 93.2 bits;  conditional E-value: 7.7e-30
   TIGR00376  336 erivdeileesdvvlstnssaa.leilk.eFDvvviDEasqAlepsvliPlvkarkl.ilAGDhkqLPPtvlsedaeeL..ektLferlik..kyper...sklLnvqYRmnekimefpskefYngklkAdesvanillrdlvkeeate...veedle.dkiPllfidtsglelleakekdstskynegEvelvke 517 
                  +++ +++l+e+++v  t ssaa le+l+  F++vv DEa+qA e   liPl  + +l il GD +qLP tvls  a+eL    +Lferl +  +  +r    ++L+vqYRm+++i  fps++fY + l+  esv++ + r    +   +   ++e++e    P + ++    ++    e+  +sk n+ E++    
  MMETSP1137-20121227|6083_1 1190 RKLEEHVLQEAHIVFCTMSSAAxLEKLDgGFETVVFDEAAQASELATLIPLRYGARLaILVGDPQQLPATVLSMRAKELgyASSLFERLQRleRQQRRdwqPHMLQVQYRMHPAIRAFPSRHFYGNALRDSESVQRAMRRAAGSVGGPPgvlSTENVEsRVAPYVIFNLRDSKQ----EQAHKSKLNKPEADFCCR 1381
                  567778999***999998887626777899*********************8766544****************9999844589*****75114444477789*******************************9876554444333323222222220234555555554444....555566666666666555 PP

  == domain 3    score: 3.5 bits;  conditional E-value: 0.011
   TIGR00376  531 eigvisPYdaqvdllrklle 550 
                  +i+v++PY+ qv  ++++  
  MMETSP1137-20121227|6083_1 1430 KIAVLTPYNGQVAEIKRSAR 1449
                  69**************9865 PP

  == domain 4    score: 62.0 bits;  conditional E-value: 2.1e-20
   TIGR00376  556 iEvssvDGFqGREkeviilslvRsnrkgevGFLkdlRRlnvaltRarRklivigdsevlkankvlkrlieyvkkkgev 633 
                  + vs vD FqGRE +++i s vRs+  + +GF+kd  R+nvaltRa   l v+gd e l + + ++ l + ++++g  
  MMETSP1137-20121227|6083_1 1494 VSVSNVDAFQGRESDIVIYSAVRSEG-RGIGFVKDRQRMNVALTRASHALFVVGDMESLAVSRDWAALLQDARERGCC 1570
                  789*********************98.88*******************************999999998888888765 PP

>> TIGR01447  recD: exodeoxyribonuclease V, alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0   1.2e-06   0.00046     162     193 ..     918     949 ..     837     957 .. 0.77
   2 ?   -2.2   0.0      0.66   2.5e+02     287     303 ..    1241    1258 ..    1226    1260 .. 0.83

  Alignments for each domain:
  == domain 1    score: 16.7 bits;  conditional E-value: 1.2e-06
   TIGR01447 162 ksnfslitGGPGTGKTttvarlllalikqska 193
                 ++ f+l+ G PGTGKTt+   ll  l + + +
  MMETSP1137-20121227|6083_1 918 HEGFVLVQGPPGTGKTTLLLALLNVLHNAQTQ 949
                 357********************999877665 PP

  == domain 2    score: -2.2 bits;  conditional E-value: 0.66
   TIGR01447  287 kketkL.IllGDknQLas 303 
                  +  ++L Il+GD  QL+ 
  MMETSP1137-20121227|6083_1 1241 RYGARLaILVGDPQQLPA 1258
                  55677669********95 PP

>> TIGR01420  pilT_fam: twitching motility protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.0   8.8e-07   0.00033     112     150 ..     909     947 ..     899     957 .. 0.82

  Alignments for each domain:
  == domain 1    score: 17.8 bits;  conditional E-value: 8.8e-07
   TIGR01420 112 evlkelaekkrGlilvtGptGsGKsttlAslidyinkek 150
                 +  +++ ++++G++lv Gp G GK+t l +l++ + + +
  MMETSP1137-20121227|6083_1 909 DLAEKVHQRHEGFVLVQGPPGTGKTTLLLALLNVLHNAQ 947
                 56688999************************9875443 PP

>> TIGR02533  type_II_gspE: general secretory pathway protein E
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0   1.7e-06   0.00062     236     272 ..     912     948 ..     885     964 .. 0.80

  Alignments for each domain:
  == domain 1    score: 16.4 bits;  conditional E-value: 1.7e-06
   TIGR02533 236 eklikrphGiiLvtGPtGsGktttLyaalsklnteer 272
                 ek+ +r  G +Lv GP G+Gktt L a l+ l+++++
  MMETSP1137-20121227|6083_1 912 EKVHQRHEGFVLVQGPPGTGKTTLLLALLNVLHNAQT 948
                 56778889***********************987765 PP

>> TIGR03420  DnaA_homol_Hda: DnaA regulatory inactivator Hda
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.0   1.1e-05    0.0042      22      66 ..     903     947 ..     896     954 .. 0.87

  Alignments for each domain:
  == domain 1    score: 14.5 bits;  conditional E-value: 1.1e-05
   TIGR03420  22 naellaalrelaeakaerllylwGesgsGksHLLqAacaaaeeag 66 
                 +  ll+ l e +++++e ++ + G++g+Gk+ LL A+ + +++a+
  MMETSP1137-20121227|6083_1 903 QGRLLTDLAEKVHQRHEGFVLVQGPPGTGKTTLLLALLNVLHNAQ 947
                 567899999999************************998877665 PP

>> TIGR02538  type_IV_pilB: type IV-A pilus assembly ATPase PilB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.4   0.0   2.5e-05    0.0093     312     344 ..     915     947 ..     894     957 .. 0.84

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 2.5e-05
   TIGR02538 312 lkkPqGlvLvtGPtGsGktvslYtaLniLnkee 344
                  ++  G+vLv GP G Gkt+ l + Ln+L + +
  MMETSP1137-20121227|6083_1 915 HQRHEGFVLVQGPPGTGKTTLLLALLNVLHNAQ 947
                 46789***********************98765 PP

>> TIGR02982  heterocyst_DevA: ABC exporter ATP-binding subunit, DevA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.9   0.0   3.5e-05     0.013       7      59 ..     893     948 ..     888     961 .. 0.78

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 3.5e-05
   TIGR02982   7 lnhyygkgelrkqvlfdinleiep..geiviltGpsGsGkttl.ltligglrsvqe 59 
                 l    g ++ + ++l d+  ++++     v+++Gp G+Gkttl l+l+  l ++q 
  MMETSP1137-20121227|6083_1 893 LVKANGLDKSQGRLLTDLAEKVHQrhEGFVLVQGPPGTGKTTLlLALLNVLHNAQT 948
                 55566777888889999888886521569*************73689999999885 PP

>> TIGR01448  recD_rel: helicase, RecD/TraA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.2   0.0    0.0024      0.88     313     366 ..     890     947 ..     875     959 .. 0.66
   2 ?   -2.4   0.0      0.47   1.7e+02     443     457 ..    1243    1258 ..    1226    1271 .. 0.82
   3 !    3.3   0.0    0.0088       3.3     655     703 ..    1501    1553 ..    1494    1565 .. 0.84

  Alignments for each domain:
  == domain 1    score: 5.2 bits;  conditional E-value: 0.0024
   TIGR01448 313 ilevekklelelseeqkealktaiq...dk...vviltGGPGtGKtTvtkaiielaeele 366
                 i + +k++  +l+++q   l+++++   ++    v++ G PGtGKtT+  a++++  + +
  MMETSP1137-20121227|6083_1 890 IETLVKAN--GLDKSQGRLLTDLAEkvhQRhegFVLVQGPPGTGKTTLLLALLNVLHNAQ 947
                 55555444..355666666655543111112225788999********999998876655 PP

  == domain 2    score: -2.4 bits;  conditional E-value: 0.47
   TIGR01448  443 darl.llvGDadqLPs 457 
                  +arl +lvGD +qLP+
  MMETSP1137-20121227|6083_1 1243 GARLaILVGDPQQLPA 1258
                  5666599********7 PP

  == domain 3    score: 3.3 bits;  conditional E-value: 0.0088
   TIGR01448  655 ksqGsefsvVilpiveahlrmL....eRnllYTalTRakkklvlvGskeAldi 703 
                    qG e  +Vi   v++  r +    +R+ +  alTRa + l++vG++e l++
  MMETSP1137-20121227|6083_1 1501 AFQGRESDIVIYSAVRSEGRGIgfvkDRQRMNVALTRASHALFVVGDMESLAV 1553
                  57999999999999999888543333899*******************99876 PP

>> TIGR03015  pepcterm_ATPase: putative secretion ATPase, PEP-CTERM locus subfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0     8e-05      0.03      40      69 ..     916     945 ..     900     953 .. 0.81

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 8e-05
   TIGR03015  40 sereGfilitGevGaGkttlvrnllkklea 69 
                 +++eGf+l+ G  G+Gkttl+  ll+ l++
  MMETSP1137-20121227|6083_1 916 QRHEGFVLVQGPPGTGKTTLLLALLNVLHN 945
                 3469******************99998765 PP

>> TIGR00635  ruvB: Holliday junction DNA helicase RuvB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   0.0   0.00026     0.096      22      48 ..     911     937 ..     901     949 .. 0.81

  Alignments for each domain:
  == domain 1    score: 9.5 bits;  conditional E-value: 0.00026
   TIGR00635  22 aakkrkealdhvllyGPPGlGkttlak 48 
                 a k ++ +   vl+ GPPG Gkttl  
  MMETSP1137-20121227|6083_1 911 AEKVHQRHEGFVLVQGPPGTGKTTLLL 937
                 55677888899*************954 PP

>> TIGR00929  VirB4_CagE: type IV secretion/conjugal transfer ATPase, VirB4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   0.0   0.00096      0.36     429     462 ..     915     944 ..     911     952 .. 0.84

  Alignments for each domain:
  == domain 1    score: 6.8 bits;  conditional E-value: 0.00096
   TIGR00929 429 HvrdakevlGhTlIfGptgsGKTvllnfllaqlq 462
                 H+r      G +l+ Gp g+GKT+ll  ll+ l 
  MMETSP1137-20121227|6083_1 915 HQRH----EGFVLVQGPPGTGKTTLLLALLNVLH 944
                 6666....89****************99988665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1625 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       233  (0.0568016); expected 82.0 (0.02)
Passed bias filter:                      176  (0.0429059); expected 82.0 (0.02)
Passed Vit filter:                        73  (0.0177962); expected 4.1 (0.001)
Passed Fwd filter:                        11  (0.00268162); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 1.51u 0.19s 00:00:01.70 Elapsed: 00:00:00.99
# Mc/sec: 2166.49
//
Query:       MMETSP1137-20121227|6084_1  [L=241]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (241 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       319  (0.0777669); expected 82.0 (0.02)
Passed bias filter:                      144  (0.0351048); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.13s 00:00:00.39 Elapsed: 00:00:00.39
# Mc/sec: 815.62
//
Query:       MMETSP1137-20121227|6085_1  [L=231]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (231 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        49  (0.0119454); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.16s 00:00:00.38 Elapsed: 00:00:00.26
# Mc/sec: 1172.67
//
Query:       MMETSP1137-20121227|6086_1  [L=85]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0021   15.1   0.0     0.0029   14.6   0.0    1.1  1  TIGR03597 GTPase_YqeH: ribosome biogenesis GTPase YqeH


Domain annotation for each model (and alignments):
>> TIGR03597  GTPase_YqeH: ribosome biogenesis GTPase YqeH
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.0     7e-07    0.0029     316     359 ..      15      68 ..       4      69 .. 0.67

  Alignments for each domain:
  == domain 1    score: 14.6 bits;  conditional E-value: 7e-07
   TIGR03597 316 kkeltike.kedivisGlgwitv.........kkeeakvkvtapkevevslrka 359
                 + +l++ +   di++sGlgw+ v         ++  a++ v++p +vevs+r +
  MMETSP1137-20121227|6086_1  15 TLNLETMThAADIAVSGLGWVAVsclstldtsETLVAEIDVWVPRSVEVSVRAP 68 
                 44444444499**********9833322221112357899*********99975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (85 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        56  (0.0136519); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.13u 0.19s 00:00:00.32 Elapsed: 00:00:00.27
# Mc/sec: 415.52
//
Query:       MMETSP1137-20121227|6087_1  [L=77]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (77 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        61  (0.0148708); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.14s 00:00:00.27 Elapsed: 00:00:00.28
# Mc/sec: 362.97
//
Query:       MMETSP1137-20121227|6089_1  [L=50]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (50 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        40  (0.00975134); expected 82.0 (0.02)
Passed bias filter:                       39  (0.00950756); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.12s 00:00:00.23 Elapsed: 00:00:00.24
# Mc/sec: 274.98
//
Query:       MMETSP1137-20121227|6090_1  [L=391]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.016   12.9   0.1       0.05   11.3   0.0    1.7  2  TIGR03296 M6dom_TIGR03296: M6 family metalloprotease domain
      0.023   11.5   0.0      0.033   11.0   0.0    1.2  1  TIGR03952 metzin_BF0631: zinc-dependent metalloproteinase lipoprotein, BF0631 family


Domain annotation for each model (and alignments):
>> TIGR03296  M6dom_TIGR03296: M6 family metalloprotease domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0      0.26   5.4e+02      25      51 ..     172     198 ..     164     205 .. 0.73
   2 ?   11.3   0.0   2.4e-05      0.05     167     239 ..     281     343 ..     277     361 .. 0.77

  Alignments for each domain:
  == domain 1    score: -1.9 bits;  conditional E-value: 0.26
   TIGR03296  25 genlgsvrdYyeeqSgGkftvtgdvvg 51 
                 +++ gs+   +ee+S+G+  +  + + 
  MMETSP1137-20121227|6090_1 172 AGTAGSIAALFEESSYGSSRFIQSASA 198
                 5677899999*******9887555444 PP

  == domain 2    score: 11.3 bits;  conditional E-value: 2.4e-05
   TIGR03296 167 vgVlaHElGHdlglPDlYdtsydgggetpvGdWslMssGswagkgstppdmkawlkeklgWlneqsvatkrgk 239
                 v V aHElGH++gl +        +g+ +    s+M+  +w     t   ++a ++ ++gWl e+ v +  g+
  MMETSP1137-20121227|6090_1 281 VMVRAHELGHNFGLLHSGT-----EGNVYNDTSSVMGI-DWP----TWRTFNAPHRFNVGWLPEDRVLDIGGR 343
                 7899*********965433.....35556678899999.999....789999999999999999888777766 PP

>> TIGR03952  metzin_BF0631: zinc-dependent metalloproteinase lipoprotein, BF0631 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   1.6e-05     0.033     234     254 ..     282     302 ..     262     315 .. 0.79

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 1.6e-05
   TIGR03952 234 etlAHELgHYlGLfHvFgeek 254
                  + AHELgH +GL H  +e++
  MMETSP1137-20121227|6090_1 282 MVRAHELGHNFGLLHSGTEGN 302
                 345************988876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (391 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        87  (0.0212092); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.30u 0.19s 00:00:00.49 Elapsed: 00:00:00.44
# Mc/sec: 1172.90
//
Query:       MMETSP1137-20121227|6091_1  [L=144]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (144 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        96  (0.0234032); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.13s 00:00:00.29 Elapsed: 00:00:00.46
# Mc/sec: 413.18
//
Query:       MMETSP1137-20121227|6092_1  [L=295]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (295 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        92  (0.0224281); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.11s 00:00:00.35 Elapsed: 00:00:00.54
# Mc/sec: 721.05
//
Query:       MMETSP1137-20121227|6093_1  [L=92]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (92 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        38  (0.00926377); expected 82.0 (0.02)
Passed bias filter:                       37  (0.00901999); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.14s 00:00:00.27 Elapsed: 00:00:00.31
# Mc/sec: 391.71
//
Query:       MMETSP1137-20121227|6094_1  [L=652]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (652 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       124  (0.0302292); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.18s 00:00:00.62 Elapsed: 00:00:00.77
# Mc/sec: 1117.62
//
Query:       MMETSP1137-20121227|6095_1  [L=156]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (156 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        49  (0.0119454); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.13s 00:00:00.29 Elapsed: 00:00:00.28
# Mc/sec: 710.01
//
Query:       MMETSP1137-20121227|6096_1  [L=132]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (132 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        79  (0.0192589); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.13s 00:00:00.28 Elapsed: 00:00:00.27
# Mc/sec: 645.28
//
Query:       MMETSP1137-20121227|6097_1  [L=338]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.3e-14   51.9   0.9    1.4e-08   31.9   0.2    2.1  2  TIGR02857 CydD: thiol reductant ABC exporter, CydD subunit
    4.7e-13   47.0   0.0    2.2e-08   31.7   0.0    2.1  2  TIGR03864 PQQ_ABC_ATP: ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system
    7.6e-12   43.1   0.0    2.5e-11   41.5   0.0    1.8  1  TIGR01189 ccmA: heme ABC exporter, ATP-binding protein CcmA
    1.6e-10   38.6   0.0    1.2e-05   22.6   0.0    2.2  2  TIGR00972 3a0107s01c2: phosphate ABC transporter, ATP-binding protein
    1.6e-10   38.4   0.0    1.4e-07   28.7   0.0    2.1  2  TIGR01186 proV: glycine betaine/L-proline transport ATP binding subunit
    2.6e-10   38.1   0.1    3.1e-07   28.0   0.0    2.2  2  TIGR01277 thiQ: thiamine ABC transporter, ATP-binding protein
    2.5e-09   34.7   0.0    7.8e-06   23.3   0.0    2.1  2  TIGR02315 ABC_phnC: phosphonate ABC transporter, ATP-binding protein
    3.1e-09   33.5   0.0    7.3e-07   25.7   0.0    2.0  2  TIGR01846 type_I_sec_HlyB: type I secretion system ATPase
    4.2e-09   33.3   0.0    0.00011   18.6   0.0    2.1  2  TIGR03797 NHLM_micro_ABC2: NHLM bacteriocin system ABC transporter, ATP-binding protein
    5.9e-09   33.6   0.1    1.3e-06   26.0   0.0    2.1  2  TIGR00968 3a0106s01: sulfate ABC transporter, ATP-binding protein
    7.4e-09   32.2   0.0    2.1e-05   20.8   0.0    2.1  2  TIGR03375 type_I_sec_LssB: type I secretion system ATPase
      1e-08   31.7   0.0    4.6e-07   26.2   0.0    2.1  2  TIGR03796 NHLM_micro_ABC1: NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein
    1.6e-08   31.5   0.2     0.0013   15.2   0.0    2.3  2  TIGR02868 CydC: thiol reductant ABC exporter, CydC subunit
    1.6e-08   32.0   0.0    0.00011   19.4   0.0    2.1  2  TIGR01188 drrA: daunorubicin resistance ABC transporter, ATP-binding protein
    1.8e-08   31.7   0.3    1.7e-07   28.4   0.2    2.1  1  TIGR03258 PhnT: 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT
    2.9e-08   31.4   0.0    3.1e-07   28.1   0.0    2.0  1  TIGR01184 ntrCD: nitrate ABC transporter, ATP-binding proteins C and D
    3.6e-08   30.8   0.0     0.0031   14.6   0.0    2.2  2  TIGR02142 modC_ABC: molybdate ABC transporter, ATP-binding protein
    4.9e-08   29.9   0.1    9.6e-06   22.3   0.0    2.1  2  TIGR02204 MsbA_rel: ABC transporter, permease/ATP-binding protein
    1.3e-07   29.1   0.0     0.0035   14.7   0.0    2.1  2  TIGR03608 L_ocin_972_ABC: putative bacteriocin export ABC transporter, lactococcin 972 group
    1.7e-07   28.9   0.0    0.00059   17.3   0.0    2.2  2  TIGR02982 heterocyst_DevA: ABC exporter ATP-binding subunit, DevA family
    2.1e-07   28.2   0.0    2.7e-05   21.3   0.0    2.2  2  TIGR03005 ectoine_ehuA: ectoine/hydroxyectoine ABC transporter, ATP-binding protein EhuA
    2.3e-07   28.2   0.2    7.2e-05   20.0   0.0    2.1  2  TIGR03265 PhnT2: putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein
    2.8e-07   28.0   0.0     0.0073   13.6   0.0    2.2  2  TIGR01166 cbiO: cobalt ABC transporter, ATP-binding protein
    4.8e-07   27.0   0.3    3.6e-05   20.8   0.0    2.1  2  TIGR01187 potA: polyamine ABC transporter, ATP-binding protein
    4.9e-07   26.4   0.1    5.6e-05   19.6   0.0    2.1  2  TIGR02203 MsbA_lipidA: lipid A export permease/ATP-binding protein MsbA
    8.2e-07   26.2   0.1    6.8e-05   19.8   0.0    2.1  2  TIGR02314 ABC_MetN: D-methionine ABC transporter, ATP-binding protein
    8.3e-07   26.3   0.8      2e-05   21.8   0.6    2.1  1  TIGR03873 F420-0_ABC_ATP: proposed F420-0 ABC transporter, ATP-binding protein
    9.4e-07   26.6   0.1    0.00014   19.5   0.0    2.2  2  TIGR03771 anch_rpt_ABC: anchored repeat-type ABC transporter, ATP-binding subunit
      1e-06   26.4   0.0      0.019   12.5   0.0    2.2  2  TIGR02673 FtsE: cell division ATP-binding protein FtsE
    1.7e-06   25.5   0.0     0.0036   14.6   0.0    2.1  2  TIGR02769 nickel_nikE: nickel import ATP-binding protein NikE
    3.4e-06   24.5   0.0     0.0057   13.9   0.0    2.2  2  TIGR03410 urea_trans_UrtE: urea ABC transporter, ATP-binding protein UrtE
    3.6e-06   24.4   0.0     0.0048   14.2   0.0    2.2  2  TIGR02324 CP_lyasePhnL: phosphonate C-P lyase system protein PhnL
    5.6e-06   23.0   0.0     0.0067   12.9   0.0    2.1  2  TIGR03719 ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family
      8e-06   23.3   0.0      0.019   12.2   0.0    2.2  2  TIGR01978 sufC: FeS assembly ATPase SufC
    2.1e-05   22.0   0.0       0.04   11.2   0.0    2.2  2  TIGR02211 LolD_lipo_ex: lipoprotein releasing system, ATP-binding protein
    7.9e-05   19.6   1.7    0.00074   16.4   0.3    2.4  2  TIGR01288 nodI: nodulation ABC transporter NodI
    9.4e-05   18.9   0.0     0.0053   13.1   0.0    2.1  2  TIGR01842 type_I_sec_PrtD: type I secretion system ATPase
    0.00016   17.9   0.0     0.0048   13.0   0.0    2.0  2  TIGR00958 3a01208: antigen peptide transporter 2
    0.00016   19.3   0.0       0.29    8.6   0.0    2.2  2  TIGR00960 3a0501s02: type II secretory pathway family protein
    0.00023   17.6   0.0      0.035   10.4   0.0    2.1  2  TIGR02633 xylG: D-xylose ABC transporter, ATP-binding protein
    0.00027   17.9   0.1     0.0013   15.6   0.0    1.8  2  TIGR03415 ABC_choXWV_ATP: choline ABC transporter, ATP-binding protein
    0.00083   15.9   0.0       0.33    7.3   0.0    2.1  2  TIGR00955 3a01204: pigment precursor permease
     0.0018   14.7   0.0       0.26    7.6   0.0    2.1  2  TIGR03269 met_CoM_red_A2: methyl coenzyme M reductase system, component A2
      0.002   14.6   0.0      0.049   10.0   0.0    2.1  2  TIGR01194 cyc_pep_trnsptr: cyclic peptide transporter
     0.0021   13.3   0.1      0.067    8.3   0.0    2.0  2  TIGR00957 MRP_assoc_pro: multi drug resistance-associated protein (MRP)
     0.0022   15.5   0.0      0.023   12.2   0.0    2.0  2  TIGR03740 galliderm_ABC: lantibiotic protection ABC transporter, ATP-binding subunit
      0.003   15.1   0.0       0.11   10.0   0.0    2.2  2  TIGR03411 urea_trans_UrtD: urea ABC transporter, ATP-binding protein UrtD
     0.0073   13.2   0.0      0.012   12.5   0.0    1.2  1  TIGR03465 HpnD: squalene synthase HpnD
     0.0076   12.0   0.0      0.011   11.4   0.0    1.1  1  TIGR00618 sbcc: exonuclease SbcC
  ------ inclusion threshold ------
      0.011   13.8   0.0       0.02   13.1   0.0    1.3  1  TIGR01715 phage_lam_T: phage tail assembly protein T
      0.014   11.4   0.0      0.019   11.0   0.0    1.1  1  TIGR00929 VirB4_CagE: type IV secretion/conjugal transfer ATPase, VirB4 family
      0.028   10.8   0.0      0.085    9.2   0.0    1.8  1  TIGR01192 chvA: glucan exporter ATP-binding protein
      0.029   10.7   0.0       0.18    8.1   0.0    1.8  2  TIGR01193 bacteriocin_ABC: ABC-type bacteriocin transporter
      0.035    9.3   0.0       0.81    4.8   0.0    2.0  2  TIGR01271 CFTR_protein: cystic fibrosis transmembrane conductor regulator (CFTR)
       0.04   11.2   0.0        4.1    4.6   0.0    2.1  2  TIGR03522 GldA_ABC_ATP: gliding motility-associated ABC transporter ATP-binding subunit GldA
      0.045    8.3   0.0       0.24    5.9   0.0    1.8  2  TIGR01257 rim_protein: rim ABC transporter


Domain annotation for each model (and alignments):
>> TIGR02857  CydD: thiol reductant ABC exporter, CydD subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.0   2.2e-06   0.00016     336     372 ..      96     132 ..      70     140 .. 0.79
   2 !   31.9   0.2     2e-10   1.4e-08     422     524 ..     165     274 ..     148     278 .. 0.79

  Alignments for each domain:
  == domain 1    score: 18.6 bits;  conditional E-value: 2.2e-06
   TIGR02857 336 palkevsltvepgelvalvGaSGaGKstllklllgfv 372
                 + ++   l+++p+ + a++G+ G+GKstll++ll  +
  MMETSP1137-20121227|6097_1  96 ASVNIDALELPPRGIFAIAGKNGCGKSTLLSILLACA 132
                 3455556899***********************9876 PP

  == domain 2    score: 31.9 bits;  conditional E-value: 2e-10
   TIGR02857 422 daseaevkealeragldelvkalpq....gleteiGergagLSgGqrqRlaLAr.allrda..pllllDEPtahLDaeteaevlealrelaegrtvllvaHrlalaelad 524
                   s+ + ++a++ a   ++ ++ p+     + +  ++  a LSgGqr +  L r ++lr++  p+lllDE  a+LD+ ++  v++++r+ + +   l+  H +   ++ad
  MMETSP1137-20121227|6097_1 165 ALSTRAPSRAARLASELHFSAESPDaiaaAWMRTHDDYCASLSGGQRSKFELLRsVFLRPScpPVLLLDEAFAALDPLSKTLVMRKVRAHCAASLALVTYHADPDDARAD 274
                 555555566666666666666555511114556789999************999578999899**************************************988777776 PP

>> TIGR03864  PQQ_ABC_ATP: ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   0.0   0.00013    0.0097      21      48 ..     102     129 ..      84     150 .. 0.79
   2 !   31.7   0.0     3e-10   2.2e-08     127     182 ..     200     258 ..     186     281 .. 0.86

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 0.00013
   TIGR03864  21 sltvakgefvaLLGpnGaGkstLfsllt 48 
                 +l++++  + a+ G nG GkstL+s+l 
  MMETSP1137-20121227|6097_1 102 ALELPPRGIFAIAGKNGCGKSTLLSILL 129
                 46777777999**************985 PP

  == domain 2    score: 31.7 bits;  conditional E-value: 3e-10
   TIGR03864 127 eekvreLnGGhrrrveiarallhePk...lLLlDeatvGLDiesraalveevrelvree 182
                 ++   +L+GG+r + e+ r++  +P+   +LLlDea + LD+ s++ ++++vr+ ++++
  MMETSP1137-20121227|6097_1 200 DDYCASLSGGQRSKFELLRSVFLRPScppVLLLDEAFAALDPLSKTLVMRKVRAHCAAS 258
                 566889***************999754449************************99654 PP

>> TIGR01189  ccmA: heme ABC exporter, ATP-binding protein CcmA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.5   0.0   3.4e-13   2.5e-11      21     187 ..     103     267 ..      86     276 .. 0.79

  Alignments for each domain:
  == domain 1    score: 41.5 bits;  conditional E-value: 3.4e-13
   TIGR01189  21 felaaGealvveGpnGiGKttLLRilaGLlkpes..GevelndkelaeqrdelaeellylgHldglKaeLsalEnLkfyaallqseqktveealekvgLsgledlpvaqLsAGqkrRlalarLll...skaplWiLDEPttalDkegvellaellaaHlargGivllathqd 187
                 +el +  + ++ G+nG GK+tLL il    +++     v+++   +  +   ++ + + ++H+ +  ++ +     +  ++l+ s++    +a++++ ++ ++d  +a+Ls Gq+ ++ l r +    s  p+ +LDE ++alD  + +l++++++aH+a   ++l++ h d
  MMETSP1137-20121227|6097_1 103 LELPPRGIFAIAGKNGCGKSTLLSILLACARSAPppHGVDFA---TPPSIALPSSDAAIVTHATTALSTRAPSRAARLASELHFSAE--SPDAIAAAWMRTHDD-YCASLSGGQRSKFELLRSVFlrpSCPPVLLLDEAFAALDPLSKTLVMRKVRAHCAAS-LALVTYHAD 267
                 5666777899**************997776655411446666...3334447889999*****998888889999999999998777..789999999988776.5889***********995441225689***************************975.677777776 PP

>> TIGR00972  3a0107s01c2: phosphate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.0   7.7e-05    0.0056      11      46 ..      91     127 ..      85     133 .. 0.79
   2 !   22.6   0.0   1.6e-07   1.2e-05     138     184 ..     199     248 ..     174     276 .. 0.82

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 7.7e-05
   TIGR00972  11 ygekealkdvn.leikknkvtaliGpsGcGkstllrs 46 
                 y   +a  +++ le++ + + a+ G+ GcGkstll  
  MMETSP1137-20121227|6097_1  91 YERGSASVNIDaLELPPRGIFAIAGKNGCGKSTLLSI 127
                 5555555555438999******************976 PP

  == domain 2    score: 22.6 bits;  conditional E-value: 1.6e-07
   TIGR00972 138 lkksalsLsGGqqqrlciaralavePe...vlLlDePtsaLDpiatekie 184
                  +++  sLsGGq+ ++ + r++ ++P    vlLlDe  +aLDp + + + 
  MMETSP1137-20121227|6097_1 199 HDDYCASLSGGQRSKFELLRSVFLRPScppVLLLDEAFAALDPLSKTLVM 248
                 457889*****************99754449************9876654 PP

>> TIGR01186  proV: glycine betaine/L-proline transport ATP binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.6   0.0    0.0054       0.4       7      39 ..      96     128 ..      92     139 .. 0.85
   2 !   28.7   0.0     2e-09   1.4e-07     123     167 ..     199     246 ..     190     273 .. 0.83

  Alignments for each domain:
  == domain 1    score: 7.6 bits;  conditional E-value: 0.0054
   TIGR01186   7 lgvndvdleieeGeiiviiGlsGsGkstlvrll 39 
                  +vn   le+    i+ i G  G+Gkstl+ +l
  MMETSP1137-20121227|6097_1  96 ASVNIDALELPPRGIFAIAGKNGCGKSTLLSIL 128
                 56676778888889***************9876 PP

  == domain 2    score: 28.7 bits;  conditional E-value: 2e-09
   TIGR01186 123 edryPdelsGGmqqrvGlaralaae...PdlllmdeafsaldPlirde 167
                 +d y   lsGG++ +  l+r++      P++ll+deaf+aldPl ++ 
  MMETSP1137-20121227|6097_1 199 HDDYCASLSGGQRSKFELLRSVFLRpscPPVLLLDEAFAALDPLSKTL 246
                 588******************976522279**************9875 PP

>> TIGR01277  thiQ: thiamine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.8   0.0    0.0066      0.49      26      44 ..     110     128 ..      96     140 .. 0.86
   2 !   28.0   0.0   4.2e-09   3.1e-07     126     198 ..     203     277 ..     182     285 .. 0.80

  Alignments for each domain:
  == domain 1    score: 7.8 bits;  conditional E-value: 0.0066
   TIGR01277  26 rvailGesGaGkstllnli 44 
                 + ai G+ G Gkstll+++
  MMETSP1137-20121227|6097_1 110 IFAIAGKNGCGKSTLLSIL 128
                 679*************976 PP

  == domain 2    score: 28.0 bits;  conditional E-value: 4.2e-09
   TIGR01277 126 peelsGGqrqrvalarc.lvrek..pillldepfsaldpklreemlalvkkladekkltlllvthslsdaaaiasq 198
                   +lsGGqr +  l r  ++r+   p+lllde f+aldp+ ++ ++  v+  +    l+l+    +++da+a a++
  MMETSP1137-20121227|6097_1 203 CASLSGGQRSKFELLRSvFLRPScpPVLLLDEAFAALDPLSKTLVMRKVRAHCAA-SLALVTYHADPDDARADADE 277
                 568**********9995378986559**************999999999888864.34444444456788777765 PP

>> TIGR02315  ABC_phnC: phosphonate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.3   0.0     0.002      0.15       9      48 ..      89     128 ..      85     135 .. 0.83
   2 !   23.3   0.0   1.1e-07   7.8e-06     140     193 ..     200     256 ..     193     266 .. 0.84

  Alignments for each domain:
  == domain 1    score: 9.3 bits;  conditional E-value: 0.002
   TIGR02315   9 kvypngkqalknvnleikkGelvaviGlsGaGkstllrsi 48 
                   y+ g+++++   le+ +  + a+ G+ G Gkstll  +
  MMETSP1137-20121227|6097_1  89 AAYERGSASVNIDALELPPRGIFAIAGKNGCGKSTLLSIL 128
                 567777777777778999999***************9765 PP

  == domain 2    score: 23.3 bits;  conditional E-value: 1.1e-07
   TIGR02315 140 akradqLsGGqqqRvaiaRalaqqpk...lilaDEPiasLDpksskqvmdllkrink 193
                 +  + +LsGGq+ +  + R++  +p+   ++l DE  a+LDp s + vm++++  + 
  MMETSP1137-20121227|6097_1 200 DDYCASLSGGQRSKFELLRSVFLRPScppVLLLDEAFAALDPLSKTLVMRKVRAHCA 256
                 566899**************9977643339*********************998765 PP

>> TIGR01846  type_I_sec_HlyB: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.9   0.0    0.0098      0.72     462     503 ..      88     128 ..      84     140 .. 0.78
   2 !   25.7   0.0     1e-08   7.3e-07     564     643 ..     172     258 ..     149     266 .. 0.78

  Alignments for each domain:
  == domain 1    score: 5.9 bits;  conditional E-value: 0.0098
   TIGR01846 462 rfrykedspevlsnlsldikaGeviGivGpsGsGkstltkll 503
                 r  y++ s++v  + +l++++  +  i G+ G+Gkstl  +l
  MMETSP1137-20121227|6097_1  88 RAAYERGSASVNID-ALELPPRGIFAIAGKNGCGKSTLLSIL 128
                 55566666666443.5888999999************97654 PP

  == domain 2    score: 25.7 bits;  conditional E-value: 1e-08
   TIGR01846 564 iaaaklaGahdfiselkqG....yetevgekGaalsGGqrqrialaralvan...Prilildeatsaldyeseavimrnlreickgr 643
                   aa+la   +f  e ++     +  + ++  a+lsGGqr +  l r++      P +l+ldea +ald  s +++mr++r+ c++ 
  MMETSP1137-20121227|6097_1 172 SRAARLASELHFSAESPDAiaaaWMRTHDDYCASLSGGQRSKFELLRSVFLRpscPPVLLLDEAFAALDPLSKTLVMRKVRAHCAAS 258
                 56888888888888777651111556678889****************9866112679***********************999865 PP

>> TIGR03797  NHLM_micro_ABC2: NHLM bacteriocin system ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.6   0.0    0.0001    0.0075     481     501 ..     110     130 ..      86     137 .. 0.82
   2 !   18.6   0.0   1.6e-06   0.00011     586     631 ..     203     251 ..     192     261 .. 0.87

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 0.0001
   TIGR03797 481 fvaivGaSGsGKStllrlLLg 501
                   ai G+ G+GKStll +LL+
  MMETSP1137-20121227|6097_1 110 IFAIAGKNGCGKSTLLSILLA 130
                 569****************97 PP

  == domain 2    score: 18.6 bits;  conditional E-value: 1.6e-06
   TIGR03797 586 ggtlSGGQrQRlliAralvrkPr...illfDEATSALDNrtQaiVsesl 631
                  ++lSGGQr +  + r++  +P    +ll+DEA  ALD  ++++V+  +
  MMETSP1137-20121227|6097_1 203 CASLSGGQRSKFELLRSVFLRPScppVLLLDEAFAALDPLSKTLVMRKV 251
                 578****************99754449*************999999766 PP

>> TIGR00968  3a0106s01: sulfate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   0.0     0.033       2.4      20      46 ..     102     128 ..      87     136 .. 0.80
   2 !   26.0   0.0   1.7e-08   1.3e-06     124     171 ..     199     248 ..     193     283 .. 0.71

  Alignments for each domain:
  == domain 1    score: 5.4 bits;  conditional E-value: 0.033
   TIGR00968  20 dlevktGslvallGpsGsGkstllrvi 46 
                  le++   + a+ G  G Gkstll ++
  MMETSP1137-20121227|6097_1 102 ALELPPRGIFAIAGKNGCGKSTLLSIL 128
                 4777888899**************987 PP

  == domain 2    score: 26.0 bits;  conditional E-value: 1.7e-08
   TIGR00968 124 gdrypsqlsGGqrqrvalaralavepq...vllldepfgaldakvrkelra 171
                  d y + lsGGqr +  l r++ + p    vlllde f+ald    k l  
  MMETSP1137-20121227|6097_1 199 HDDYCASLSGGQRSKFELLRSVFLRPScppVLLLDEAFAALDPL-SKTLVM 248
                 689*******************998654449***********74.444433 PP

>> TIGR03375  type_I_sec_LssB: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.4   0.0   0.00081     0.059     479     516 ..      94     131 ..      85     136 .. 0.79
   2 !   20.8   0.0   2.9e-07   2.1e-05     601     659 ..     203     264 ..     163     267 .. 0.82

  Alignments for each domain:
  == domain 1    score: 9.4 bits;  conditional E-value: 0.00081
   TIGR03375 479 ekaaLknvslkikpGekvaiiGriGsGKstllklllgl 516
                  +a+++   l++ p    ai G++G+GKstll +ll  
  MMETSP1137-20121227|6097_1  94 GSASVNIDALELPPRGIFAIAGKNGCGKSTLLSILLAC 131
                 5566777777777777889*************999876 PP

  == domain 2    score: 20.8 bits;  conditional E-value: 2.9e-07
   TIGR03375 601 GesLSgGQrqavalaRallkd...ppillLDEPtsalDnsseekllerLkelladkTlvlvt 659
                  +sLSgGQr    l R +      pp+llLDE  +alD  s + +++++++ +a    +++ 
  MMETSP1137-20121227|6097_1 203 CASLSGGQRSKFELLRSVFLRpscPPVLLLDEAFAALDPLSKTLVMRKVRAHCAASLALVTY 264
                 579*************9987623369**********************99988866555544 PP

>> TIGR03796  NHLM_micro_ABC1: NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.0     0.057       4.2     500     524 ..     103     127 ..      86     134 .. 0.82
   2 !   26.2   0.0   6.2e-09   4.6e-07     613     663 ..     203     256 ..     187     265 .. 0.86

  Alignments for each domain:
  == domain 1    score: 3.2 bits;  conditional E-value: 0.057
   TIGR03796 500 lslkpGqrvAlvGgsGsGkstiakl 524
                 l+l p    A+ G  G+Gkst+  +
  MMETSP1137-20121227|6097_1 103 LELPPRGIFAIAGKNGCGKSTLLSI 127
                 778888889************8655 PP

  == domain 2    score: 26.2 bits;  conditional E-value: 6.2e-09
   TIGR03796 613 ganlsGGqrqRleiARaLvknPs...iLilDEatsaLDaetEkaidenlrrRgc 663
                  a lsGGqr ++e+ R++  +Ps   +L+lDEa +aLD+     +++++r    
  MMETSP1137-20121227|6097_1 203 CASLSGGQRSKFELLRSVFLRPScppVLLLDEAFAALDPLSKTLVMRKVRAHCA 256
                 5789**************999876669*********************997655 PP

>> TIGR02868  CydC: thiol reductant ABC exporter, CydC subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0   1.8e-05    0.0013     339     383 ..      86     130 ..      22     143 .. 0.76
   2 !   13.9   0.0   4.5e-05    0.0033     469     522 ..     203     259 ..     196     266 .. 0.83

  Alignments for each domain:
  == domain 1    score: 15.2 bits;  conditional E-value: 1.8e-05
   TIGR02868 339 dlsvsypgaeevlkgvsldlepGervavvGasGaGKstLlallag 383
                  ++++y+ +++ ++   l+l+p    a+ G+ G+GKstLl++l+ 
  MMETSP1137-20121227|6097_1  86 SVRAAYERGSASVNIDALELPPRGIFAIAGKNGCGKSTLLSILLA 130
                 4667788887766666799999999****************9964 PP

  == domain 2    score: 13.9 bits;  conditional E-value: 4.5e-05
   TIGR02868 469 garlSGGerqRlalARaLl...adapvllLDEPtehLDaeteeelledLlaaeegrt 522
                  a+lSGG+r +  l R +    +  pvllLDE  + LD+  +  ++++++a  +   
  MMETSP1137-20121227|6097_1 203 CASLSGGQRSKFELLRSVFlrpSCPPVLLLDEAFAALDPLSKTLVMRKVRAHCAASL 259
                 589*************988677778***************99999998886655544 PP

>> TIGR01188  drrA: daunorubicin resistance ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.4   0.0   0.00086     0.063      14      41 ..     103     130 ..      91     140 .. 0.82
   2 !   19.4   0.0   1.5e-06   0.00011     118     177 ..     199     261 ..     193     282 .. 0.81

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 0.00086
   TIGR01188  14 lkveegevfglLGPnGAGKtttikmLtt 41 
                 l+++   +f++ G nG GK+t++++L +
  MMETSP1137-20121227|6097_1 103 LELPPRGIFAIAGKNGCGKSTLLSILLA 130
                 55666779****************9965 PP

  == domain 2    score: 19.4 bits;  conditional E-value: 1.5e-06
   TIGR01188 118 adkkvktysgGmrrrlelaasliaqPe...vlfLDEPtiGLDprtrraiwdlieelkkegvti 177
                  d +   +sgG+r + el +s+  +P+   vl LDE    LDp ++  + + +++   +  ++
  MMETSP1137-20121227|6097_1 199 HDDYCASLSGGQRSKFELLRSVFLRPScppVLLLDEAFAALDPLSKTLVMRKVRAHCAASLAL 261
                 56777899**************998654449*********************99877766554 PP

>> TIGR03258  PhnT: 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.4   0.2   2.4e-09   1.7e-07      23     209 ..      97     277 ..      78     288 .. 0.77

  Alignments for each domain:
  == domain 1    score: 28.4 bits;  conditional E-value: 2.4e-09
   TIGR03258  23 vlddlsleieaGellallGksGsGkttllravaGfvkadGGrllvadrdlthlppykrnlallvqnyalfphlkveenvafGlrarkq.skaliaervadalklvqlsdaaarlpaqlsGGqqqrvalaralvvrpd...vllldeplsaldaqlrasvveelkalhrelpeltvlyvthdrdealvladk 209
                  ++  +le+ +  ++a+ Gk G+Gk+tll ++    +++       + d +  pp   ++al   + a+  h +         ra +  s+   +    da+    +      + a lsGGq+ +  l r++ +rp    vlllde ++ald   ++ v+ +++a h     l+++    d d+a + ad 
  MMETSP1137-20121227|6097_1  97 SVNIDALELPPRGIFAIAGKNGCGKSTLLSILLACARSAPPP---HGVDFA-TPP---SIALPSSDAAIVTHATTALSTRAPSRAARLaSELHFSAESPDAIAAAWMRT-HDDYCASLSGGQRSKFELLRSVFLRPScppVLLLDEAFAALDPLSKTLVMRKVRA-HC-AASLALVTYHADPDDARADADE 277
                 3344467889999*****************998888877654...344554.355...689999********9988777777777776155668889999999998875.5689********************9754459***********8777766666654.43.4578888888888888887776 PP

>> TIGR01184  ntrCD: nitrate ABC transporter, ATP-binding proteins C and D
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.1   0.0   4.2e-09   3.1e-07      13     156 ..     110     250 ..      99     277 .. 0.75

  Alignments for each domain:
  == domain 1    score: 28.1 bits;  conditional E-value: 4.2e-09
   TIGR01184  13 fislighsgcgkstllnliaglek...ptsgavilegkeitepgpdrmvvfqnysllpwltvrenialavdavlrdlskserreiveehielvglreaadkrpeqlsggmkqrvaiaralsirpk...lllldepfgaldaltreelqek 156
                 + ++ g+ gcgkstll ++   ++   p +g        i  p  d  +v    + l  ++      la +      s +  ++i        +  ++ d + + lsgg + +  + r++ +rp    +lllde f ald l++  +  k
  MMETSP1137-20121227|6097_1 110 IFAIAGKNGCGKSTLLSILLACARsapPPHGVDFATPPSIALPSSDAAIVTHATTALSTRAPSRAARLASELH---FSAESPDAIAA------AWMRTHDDYCASLSGGQRSKFELLRSVFLRPScppVLLLDEAFAALDPLSKTLVMRK 250
                 45789***********99765544232556666667789*************999999999988888887653...33333444433......445778999********************9754449*************99765544 PP

>> TIGR02142  modC_ABC: molybdate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.0   6.4e-05    0.0047       3      43 ..      87     128 ..      85     136 .. 0.81
   2 !   14.6   0.0   4.2e-05    0.0031     129     171 ..     203     248 ..     198     265 .. 0.85

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 6.4e-05
   TIGR02142   3 lrlekrlgdfeLdvd.lelpgkgvtalFGrsGsGktslirli 43 
                 +r+  + g  ++++d lelp +g+ a+ G+ G+Gk++l+ ++
  MMETSP1137-20121227|6097_1  87 VRAAYERGSASVNIDaLELPPRGIFAIAGKNGCGKSTLLSIL 128
                 666667777888886379*********************986 PP

  == domain 2    score: 14.6 bits;  conditional E-value: 4.2e-05
   TIGR02142 129 pgkLsGGekqRvaigRAlL...ssPeLLlmDePLaaLDekrkkeil 171
                  ++LsGG + +  + R +    s P +Ll+De  aaLD  +k+ ++
  MMETSP1137-20121227|6097_1 203 CASLSGGQRSKFELLRSVFlrpSCPPVLLLDEAFAALDPLSKTLVM 248
                 689**************9834455679***********99998776 PP

>> TIGR02204  MsbA_rel: ABC transporter, permease/ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   0.0     0.016       1.2     359     387 ..     103     129 ..      83     140 .. 0.77
   2 !   22.3   0.0   1.3e-07   9.6e-06     473     531 ..     202     263 ..     159     273 .. 0.79

  Alignments for each domain:
  == domain 1    score: 5.5 bits;  conditional E-value: 0.016
   TIGR02204 359 ldltvrpGetvalvGPsGaGkstllelll 387
                 l  ++ p    a+ G  G Gkstll++ll
  MMETSP1137-20121227|6097_1 103 L--ELPPRGIFAIAGKNGCGKSTLLSILL 129
                 3..34566678***************998 PP

  == domain 2    score: 22.3 bits;  conditional E-value: 1.3e-07
   TIGR02204 473 rgvtLsGGqkqriaiarailkd...apiLLLdeatsaLdaeseqlvqqaleelmkgrttlvi 531
                    +LsGGq+ +  + r+++      p+LLLdea +aLd  s +lv + + +  +   +lv 
  MMETSP1137-20121227|6097_1 202 YCASLSGGQRSKFELLRSVFLRpscPPVLLLDEAFAALDPLSKTLVMRKVRAHCAASLALVT 263
                 5679*************9864423369*******************9988877776666665 PP

>> TIGR03608  L_ocin_972_ABC: putative bacteriocin export ABC transporter, lactococcin 972 group
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0   4.8e-05    0.0035      26      44 ..     110     128 ..      97     135 .. 0.85
   2 !   12.2   0.0   0.00027      0.02     130     179 ..     201     253 ..     193     272 .. 0.81

  Alignments for each domain:
  == domain 1    score: 14.7 bits;  conditional E-value: 4.8e-05
   TIGR03608  26 lvaivGesGsGKstlLnil 44 
                 + ai G+ G+GKstlL il
  MMETSP1137-20121227|6097_1 110 IFAIAGKNGCGKSTLLSIL 128
                 78**************998 PP

  == domain 2    score: 12.2 bits;  conditional E-value: 0.00027
   TIGR03608 130 kkiyelsgGekqRvalar.illke..selilADEPtgsLDkknreevlellke 179
                  +  +lsgG++ +  l r + l++  ++++l DE  ++LD+ ++  v++ ++ 
  MMETSP1137-20121227|6097_1 201 DYCASLSGGQRSKFELLRsVFLRPscPPVLLLDEAFAALDPLSKTLVMRKVRA 253
                 56789***********994557763358*******************987665 PP

>> TIGR02982  heterocyst_DevA: ABC exporter ATP-binding subunit, DevA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.4   0.0    0.0021      0.15      26      56 ..     103     134 ..      90     137 .. 0.81
   2 !   17.3   0.0     8e-06   0.00059     134     199 ..     198     263 ..     167     273 .. 0.73

  Alignments for each domain:
  == domain 1    score: 9.4 bits;  conditional E-value: 0.0021
   TIGR02982  26 leiepgeiviltGpsGsGkttllt.ligglrs 56 
                 le+ p  i  ++G+ G+Gk tll+ l+++ rs
  MMETSP1137-20121227|6097_1 103 LELPPRGIFAIAGKNGCGKSTLLSiLLACARS 134
                 7888889999*************934556665 PP

  == domain 2    score: 17.3 bits;  conditional E-value: 8e-06
   TIGR02982 134 rldykpedlsgGqkqrvaiaralvarPk...lvladePtaaldkksgrevvellqklareqgttillvt 199
                  +d + + lsgGq+ +  + r++  rP+   ++l de  aald  s   v+  ++    + ++++ lvt
  MMETSP1137-20121227|6097_1 198 THDDYCASLSGGQRSKFELLRSVFLRPScppVLLLDEAFAALDPLSKTLVMRKVRA---HCAASLALVT 263
                 35677899***************9887533389**********9998766544433...3333444555 PP

>> TIGR03005  ectoine_ehuA: ectoine/hydroxyectoine ABC transporter, ATP-binding protein EhuA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   0.0     0.043       3.2      29      48 ..     111     130 ..      99     135 .. 0.87
   2 !   21.3   0.0   3.7e-07   2.7e-05     140     205 ..     199     264 ..     190     279 .. 0.79

  Alignments for each domain:
  == domain 1    score: 4.7 bits;  conditional E-value: 0.043
   TIGR03005  29 valiGpsGsGkstilrilmt 48 
                  a++G  G Gkst+l il++
  MMETSP1137-20121227|6097_1 111 FAIAGKNGCGKSTLLSILLA 130
                 5789*************986 PP

  == domain 2    score: 21.3 bits;  conditional E-value: 3.7e-07
   TIGR03005 140 adalpaqlsGGqkqrvaiaralalrpk...vllfdevtsaldpelveevlnvlrrlasetdltmllvth 205
                 +d + a lsGGq+ +  + r++ lrp    vll+de+ +aldp        v+r++ +    ++ lvt+
  MMETSP1137-20121227|6097_1 199 HDDYCASLSGGQRSKFELLRSVFLRPScppVLLLDEAFAALDPLSKTL---VMRKVRAHCAASLALVTY 264
                 68899*******************9754449************65544...455555555555666665 PP

>> TIGR03265  PhnT2: putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   0.0     0.014         1      32      50 ..     110     128 ..      86     134 .. 0.80
   2 !   20.0   0.0   9.8e-07   7.2e-05     127     173 ..     198     247 ..     193     276 .. 0.81

  Alignments for each domain:
  == domain 1    score: 6.3 bits;  conditional E-value: 0.014
   TIGR03265  32 lvclLGPsGCGkttLLrii 50 
                 + ++ G  GCGk+tLL i+
  MMETSP1137-20121227|6097_1 110 IFAIAGKNGCGKSTLLSIL 128
                 668899**********986 PP

  == domain 2    score: 20.0 bits;  conditional E-value: 9.8e-07
   TIGR03265 127 seekyPgqlsGGqqqrvaLaralalsPg...lLLLDePlsaLDakvrekL 173
                 +++ y + lsGGq+ +  L r++ l+P+   +LLLDe ++aLD   +  +
  MMETSP1137-20121227|6097_1 198 THDDYCASLSGGQRSKFELLRSVFLRPScppVLLLDEAFAALDPLSKTLV 247
                 5789******************9988654449***********8666554 PP

>> TIGR01166  cbiO: cobalt ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.2   0.0   0.00027      0.02      20      39 ..     110     129 ..      94     137 .. 0.83
   2 !   13.6   0.0   9.9e-05    0.0073     122     177 ..     200     258 ..     179     269 .. 0.80

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 0.00027
   TIGR01166  20 vlallGanGaGkstlllhln 39 
                   a+ G+nG+Gkstll+ l 
  MMETSP1137-20121227|6097_1 110 IFAIAGKNGCGKSTLLSILL 129
                 57999***********9875 PP

  == domain 2    score: 13.6 bits;  conditional E-value: 9.9e-05
   TIGR01166 122 erpthllsgGekkrvaiagavalrpd...vllldePtagldpaGaeqlleilrklreeG 177
                 +  +  lsgG++ +  +   v lrp    vlllde  a ldp  ++ +++ +r   ++ 
  MMETSP1137-20121227|6097_1 200 DDYCASLSGGQRSKFELLRSVFLRPScppVLLLDEAFAALDPLSKTLVMRKVRAHCAAS 258
                 556889******************864448*************9999888877665555 PP

>> TIGR01187  potA: polyamine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.1     0.055         4       2      16 ..     114     128 ..     113     135 .. 0.82
   2 !   20.8   0.0   4.9e-07   3.6e-05      96     133 ..     201     241 ..     191     273 .. 0.83

  Alignments for each domain:
  == domain 1    score: 4.2 bits;  conditional E-value: 0.055
   TIGR01187   2 LGpsGsGkttlLrll 16 
                  G  G+Gk+tlL +l
  MMETSP1137-20121227|6097_1 114 AGKNGCGKSTLLSIL 128
                 5899********987 PP

  == domain 2    score: 20.8 bits;  conditional E-value: 4.9e-07
   TIGR01187  96 rkpsqlsGGqrqrvalaravvkkPk...iLLlDeplsaLDk 133
                  +   lsGGqr +  l r+v  +P    +LLlDe+++aLD 
  MMETSP1137-20121227|6097_1 201 DYCASLSGGQRSKFELLRSVFLRPScppVLLLDEAFAALDP 241
                 56789****************99754449***********6 PP

>> TIGR02203  MsbA_lipidA: lipid A export permease/ATP-binding protein MsbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   0.0     0.021       1.6     353     379 ..     102     128 ..      71     133 .. 0.80
   2 !   19.6   0.0   7.7e-07   5.6e-05     468     510 ..     203     248 ..     164     266 .. 0.83

  Alignments for each domain:
  == domain 1    score: 4.9 bits;  conditional E-value: 0.021
   TIGR02203 353 slkveaGevvalvGrsGsGkstlvnll 379
                  l++ +  + a+ G+ G Gkstl+++l
  MMETSP1137-20121227|6097_1 102 ALELPPRGIFAIAGKNGCGKSTLLSIL 128
                 4667788899*************9986 PP

  == domain 2    score: 19.6 bits;  conditional E-value: 7.7e-07
   TIGR02203 468 gskLsGGqRqRlaiaRall.kda..PiLiLDeatsaLDneseRlvq 510
                  + LsGGqR +  + R+++ + +  P+L+LDea +aLD  s  lv 
  MMETSP1137-20121227|6097_1 203 CASLSGGQRSKFELLRSVFlRPScpPVLLLDEAFAALDPLSKTLVM 248
                 678*************9852554559************99987775 PP

>> TIGR02314  ABC_MetN: D-methionine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   0.0     0.055         4      25      49 ..     102     126 ..      90     136 .. 0.83
   2 !   19.8   0.0   9.3e-07   6.8e-05     133     179 ..     198     247 ..     191     267 .. 0.82

  Alignments for each domain:
  == domain 1    score: 4.1 bits;  conditional E-value: 0.055
   TIGR02314  25 slfvpkgqifgvigasgagkstlir 49 
                 +l +p   if + g  g gkstl+ 
  MMETSP1137-20121227|6097_1 102 ALELPPRGIFAIAGKNGCGKSTLLS 126
                 47789899**************986 PP

  == domain 2    score: 19.8 bits;  conditional E-value: 9.3e-07
   TIGR02314 133 kkdsypsnlsggqkqrvaiaral...asepkvllcdeatsaldpattqsi 179
                  +d y + lsggq+ +  + r++    s p vll dea +aldp +   +
  MMETSP1137-20121227|6097_1 198 THDDYCASLSGGQRSKFELLRSVflrPSCPPVLLLDEAFAALDPLSKTLV 247
                 689******************9733347889*************876544 PP

>> TIGR03873  F420-0_ABC_ATP: proposed F420-0 ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.8   0.6   2.8e-07     2e-05      22     192 ..     103     263 ..      85     286 .. 0.67

  Alignments for each domain:
  == domain 1    score: 21.8 bits;  conditional E-value: 2.8e-07
   TIGR03873  22 vtaPaGaltgllGPnGsGkstllrllaGllapdaGevdlagadlkalsrrararrvalveqdsdaevplsvrdvvalGriPhrslfaadsdedaevvdralarvelssladrdlstlsGGerqrvhlaralaqePk...lllldePtnhldvsaqlellalvrelaaegvtvvv 192
                 ++ P+  + ++ G nG+Gkstll++l      ++ +  + g+d  + +  a     a +  ++++   ls r      r+     f+a+s         a+a++ + +  d  +  lsGG+r + +l r++  +P+   +lllde    ld  ++  +++ vr  +a   + v 
  MMETSP1137-20121227|6097_1 103 LELPPRGIFAIAGKNGCGKSTLLSILLA---CARSAPPPHGVDFATPPSIALPSSDAAIVTHATT--ALSTRAPSRAARLASELHFSAES-------PDAIAAAWMRTH-DDYCASLSGGQRSKFELLRSVFLRPScppVLLLDEAFAALDPLSKTLVMRKVRAHCAASLALVT 263
                 4567778999*************98754...4555567788888777654444444444344333..34444444445555555555555.......444555555443.556789**************9988754448***********99999999999998766555544 PP

>> TIGR03771  anch_rpt_ABC: anchored repeat-type ABC transporter, ATP-binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   0.0     0.049       3.6       8      30 ..     110     132 ..     103     141 .. 0.84
   2 !   19.5   0.0   1.9e-06   0.00014     108     172 ..     200     267 ..     161     289 .. 0.79

  Alignments for each domain:
  == domain 1    score: 5.1 bits;  conditional E-value: 0.049
   TIGR03771   8 llgllGpnGaGkttllrailgli 30 
                 + ++ G nG Gk+tll  +l+  
  MMETSP1137-20121227|6097_1 110 IFAIAGKNGCGKSTLLSILLACA 132
                 67899***********9999865 PP

  == domain 2    score: 19.5 bits;  conditional E-value: 1.9e-06
   TIGR03771 108 drpvGelsGGqrqrvlvaralavkps...lllldepftGldlpsqellvelfeelagegtailmtthd 172
                 d     lsGGqr +  + r++ ++ps   +lllde f+ ld  s+ l++  +++ +++  a++    d
  MMETSP1137-20121227|6097_1 200 DDYCASLSGGQRSKFELLRSVFLRPScppVLLLDEAFAALDPLSKTLVMRKVRAHCAASLALVTYHAD 267
                 445678***************999765559***********999999988888888888777665555 PP

>> TIGR02673  FtsE: cell division ATP-binding protein FtsE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.5   0.0   0.00025     0.019       7      52 ..      87     132 ..      85     141 .. 0.87
   2 !   11.6   0.0   0.00047     0.034     131     191 ..     199     262 ..     192     275 .. 0.83

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 0.00025
   TIGR02673   7 vskeyaagveaLkdvslkiekgeflfltGasGaGkttllklllgae 52 
                 v  +y++g + ++   l++ ++ +  + G+ G Gk+tll +ll+ +
  MMETSP1137-20121227|6097_1  87 VRAAYERGSASVNIDALELPPRGIFAIAGKNGCGKSTLLSILLACA 132
                 67889999888888899***********************998765 PP

  == domain 2    score: 11.6 bits;  conditional E-value: 0.00047
   TIGR02673 131 akalpeelsgGeqqRvaiaRaivnk...PelllaDePtGnlDdelserildllkelnkrGttvi 191
                 ++ +  +lsgG + +  + R++  +   P++ll De    lD+  ++ +++ +++ +++ ++++
  MMETSP1137-20121227|6097_1 199 HDDYCASLSGGQRSKFELLRSVFLRpscPPVLLLDEAFAALDPLSKTLVMRKVRAHCAASLALV 262
                 5677899***************977222689*******************98888777666544 PP

>> TIGR02769  nickel_nikE: nickel import ATP-binding protein NikE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.8   0.0     0.003      0.22      40      63 ..     111     134 ..      92     157 .. 0.83
   2 !   14.6   0.0     5e-05    0.0036     145     195 ..     200     253 ..     192     267 .. 0.81

  Alignments for each domain:
  == domain 1    score: 8.8 bits;  conditional E-value: 0.003
   TIGR02769  40 vallGrsGaGkstlarlllGlekP 63 
                  a+ G+ G+Gkstl  +ll  ++ 
  MMETSP1137-20121227|6097_1 111 FAIAGKNGCGKSTLLSILLACARS 134
                 6889*************9988764 PP

  == domain 2    score: 14.6 bits;  conditional E-value: 5e-05
   TIGR02769 145 dklPrqlsGGqlqriniaralavePk...livldeavsnldlvlqasilellkk 195
                 d + + lsGGq  +  + r++ ++P    +++ldea + ld + ++ +++++++
  MMETSP1137-20121227|6097_1 200 DDYCASLSGGQRSKFELLRSVFLRPScppVLLLDEAFAALDPLSKTLVMRKVRA 253
                 567899****************997533389***************99987665 PP

>> TIGR03410  urea_trans_UrtE: urea ABC transporter, ATP-binding protein UrtE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.0   7.8e-05    0.0057       6      49 ..      87     131 ..      85     137 .. 0.81
   2 !    8.3   0.0     0.004       0.3     130     164 ..     204     241 ..     194     266 .. 0.83

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 7.8e-05
   TIGR03410   6 levaYgesevlrdvs.levekgevvavlGrngvGkttllkalvgl 49 
                 +++aY++ ++  +++ le++   + a+ G+ng Gk+tll  l++ 
  MMETSP1137-20121227|6097_1  87 VRAAYERGSASVNIDaLELPPRGIFAIAGKNGCGKSTLLSILLAC 131
                 567787777766664489999******************988775 PP

  == domain 2    score: 8.3 bits;  conditional E-value: 0.004
   TIGR03410 130 GdLsGGqqqqlaiaRaLvtePk...lllLDePteGiqP 164
                   LsGGq+ ++ + R++  +P    +llLDe    + P
  MMETSP1137-20121227|6097_1 204 ASLSGGQRSKFELLRSVFLRPScppVLLLDEAFAALDP 241
                 57***************998753338*****8766666 PP

>> TIGR02324  CP_lyasePhnL: phosphonate C-P lyase system protein PhnL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.0   0.0    0.0053      0.39      35      56 ..     109     130 ..      95     136 .. 0.82
   2 !   14.2   0.0   6.5e-05    0.0048     148     205 ..     204     264 ..     197     279 .. 0.83

  Alignments for each domain:
  == domain 1    score: 8.0 bits;  conditional E-value: 0.0053
   TIGR02324  35 elvalsGksGaGkstllkslya 56 
                  + a++Gk G Gkstll  l a
  MMETSP1137-20121227|6097_1 109 GIFAIAGKNGCGKSTLLSILLA 130
                 56799************99876 PP

  == domain 2    score: 14.2 bits;  conditional E-value: 6.5e-05
   TIGR02324 148 atfsGGekqRvniaraliad...rPiLLLdePtasLdaanrkvvvelikeakargaaligi 205
                 a  sGG + +  + r++       P+LLLde  a+Ld   +  v+  ++   a+  al++ 
  MMETSP1137-20121227|6097_1 204 ASLSGGQRSKFELLRSVFLRpscPPVLLLDEAFAALDPLSKTLVMRKVRAHCAASLALVTY 264
                 678************9875212259****************99999999999999999874 PP

>> TIGR03719  ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.9   0.0   9.2e-05    0.0067     343     370 ..     103     130 ..      87     137 .. 0.87
   2 !    8.1   0.0    0.0026      0.19     146     202 ..     190     249 ..     172     266 .. 0.75

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 9.2e-05
   TIGR03719 343 fklpkggivGviGpnGaGkstlfklitg 370
                 ++lp+ gi  + G nG+Gkstl+ ++  
  MMETSP1137-20121227|6097_1 103 LELPPRGIFAIAGKNGCGKSTLLSILLA 130
                 689********************99865 PP

  == domain 2    score: 8.1 bits;  conditional E-value: 0.0026
   TIGR03719 146 amdalrlpeedakveklsGGekrrvalcrlllek...PdlllldePtnhldaesvaWlek 202
                 a+ a  +  +d   ++lsGG++ +  l r ++ +   P +lllde    ld  s + + +
  MMETSP1137-20121227|6097_1 190 AIAAAWMRTHDDYCASLSGGQRSKFELLRSVFLRpscPPVLLLDEAFAALDPLSKTLVMR 249
                 556666778899999***********99987755112679*****999999877665555 PP

>> TIGR01978  sufC: FeS assembly ATPase SufC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.2   0.0   0.00027     0.019      21      47 ..     103     129 ..      95     135 .. 0.84
   2 !    9.0   0.0    0.0025      0.18     144     192 ..     205     256 ..     156     267 .. 0.80

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 0.00027
   TIGR01978  21 levkkGevhaimGpnGsGkstLskvla 47 
                 le+ +  + ai G+nG GkstL ++l 
  MMETSP1137-20121227|6097_1 103 LELPPRGIFAIAGKNGCGKSTLLSILL 129
                 566667799*************99986 PP

  == domain 2    score: 9.0 bits;  conditional E-value: 0.0025
   TIGR01978 144 GfsGGekkrneilqlallePk...laiLDeiDsGlDvDalkivaegvnklre 192
                   sGG + + e+l+  +l+P+   + +LDe+ + lD  +  +v+++v     
  MMETSP1137-20121227|6097_1 205 SLSGGQRSKFELLRSVFLRPScppVLLLDEAFAALDPLSKTLVMRKVRAHCA 256
                 68****************98644479*********99888888888876544 PP

>> TIGR02211  LolD_lipo_ex: lipoprotein releasing system, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.2   0.0   0.00055      0.04      26      53 ..     103     130 ..      85     143 .. 0.79
   2 !    8.5   0.0    0.0038      0.28     136     200 ..     200     264 ..     193     272 .. 0.82

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 0.00055
   TIGR02211  26 leiekgelvaivGssGsGkstllhllgg 53 
                 le+    + ai G+ G Gkstll +l +
  MMETSP1137-20121227|6097_1 103 LELPPRGIFAIAGKNGCGKSTLLSILLA 130
                 666777899**************99855 PP

  == domain 2    score: 8.5 bits;  conditional E-value: 0.0038
   TIGR02211 136 nkkpselsGGerqrvaiaralvnkPkl...vladePtgnldkktakkifelllelnkekntallvvth 200
                 + + + lsGG+r +  + r++  +P++   +l de  + ld  + + +   +++++ +   +l +vt+
  MMETSP1137-20121227|6097_1 200 DDYCASLSGGQRSKFELLRSVFLRPSCppvLLLDEAFAALDPLSKTLV---MRKVRAHCAASLALVTY 264
                 567889***************999886554899********9876654...67778888888887775 PP

>> TIGR01288  nodI: nodulation ABC transporter NodI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0       9.4   6.9e+02     109     130 ..      14      35 ..      11      52 .. 0.73
   2 !   16.4   0.3     1e-05   0.00074      33     194 ..     111     266 ..      94     303 .. 0.68

  Alignments for each domain:
  == domain 1    score: -3.2 bits;  conditional E-value: 9.4
   TIGR01288 109 treieevipsllefarleskad 130
                 +r +e+++ +ll  +r e+k  
  MMETSP1137-20121227|6097_1  14 SRVVEDTVDTLLMRSRAEAKLS 35 
                 6788888888888888887753 PP

  == domain 2    score: 16.4 bits;  conditional E-value: 1e-05
   TIGR01288  33 fgllgpngagkstiarlvlglispdegkitvlgepvpararlarakigvvpqf.dnldreftvrenllvfgryfglstreieevipsllefarleskadvrvadlsggmkrrltlarali...ndpqllildepttgldpharhliwerlrsllargktilltthl 194
                 f + g ng+gkst+  ++l  +        v +   p  + l  +   +v+    +l +    r   l    +f+ +        p  +  a + ++ d   a+lsgg + ++ l r++      p +l+lde  + ldp ++ l+  ++r+  a     l+t h 
  MMETSP1137-20121227|6097_1 111 FAIAGKNGCGKSTLLSILLACARSAPPPHGV-DFATPPSIALPSSDAAIVTHAtTALSTRAPSRAARLASELHFSAE-------SPDAIAAAWMRTH-DDYCASLSGGQRSKFELLRSVFlrpSCPPVLLLDEAFAALDPLSKTLVMRKVRAHCAASL-ALVTYHA 266
                 6677777777777777777665444443333.444555555556666665543144666666666666555544433.......3444555555554.456899**********99998722234679************************988754.4555554 PP

>> TIGR01842  type_I_sec_PrtD: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.0     0.061       4.4     340     366 ..     104     130 ..      87     139 .. 0.83
   2 !   13.1   0.0   7.2e-05    0.0053     453     496 ..     204     250 ..     198     266 .. 0.80

  Alignments for each domain:
  == domain 1    score: 3.5 bits;  conditional E-value: 0.061
   TIGR01842 340 alkaGealaiiGpsgsGkssLarllvG 366
                 +l +  + ai G  g Gks+L  +l+ 
  MMETSP1137-20121227|6097_1 104 ELPPRGIFAIAGKNGCGKSTLLSILLA 130
                 56666789**************99986 PP

  == domain 2    score: 13.1 bits;  conditional E-value: 7.2e-05
   TIGR01842 453 aaLsgGqrqRiaLaRalygdPk...lvvLDePnanLDeeGeqalaka 496
                 a+LsgGqr +  L R ++  P    +++LDe  a LD    + +++ 
  MMETSP1137-20121227|6097_1 204 ASLSGGQRSKFELLRSVFLRPScppVLLLDEAFAALDPLSKTLVMRK 250
                 79****************876533389**********8777666655 PP

>> TIGR00958  3a01208: antigen peptide transporter 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.0     0.083       6.1     505     528 ..     106     129 ..     101     132 .. 0.83
   2 !   13.0   0.0   6.5e-05    0.0048     616     658 ..     204     249 ..     180     265 .. 0.81

  Alignments for each domain:
  == domain 1    score: 2.8 bits;  conditional E-value: 0.083
   TIGR00958 505 epGevvalVGPsGsGKStvaalle 528
                  p  + a+ G +G GKSt  ++l 
  MMETSP1137-20121227|6097_1 106 PPRGIFAIAGKNGCGKSTLLSILL 129
                 5666789************99885 PP

  == domain 2    score: 13.0 bits;  conditional E-value: 6.5e-05
   TIGR00958 616 sqlsgGqkqriAiARALvrk...PrvLiLDeAtSALDaeveqllqe 658
                   lsgGq+ +  + R +  +   P vL+LDeA +ALD  +++l+ +
  MMETSP1137-20121227|6097_1 204 ASLSGGQRSKFELLRSVFLRpscPPVLLLDEAFAALDPLSKTLVMR 249
                 579************9876612356************988887765 PP

>> TIGR00960  3a0501s02: type II secretory pathway family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.6   0.0     0.004      0.29      29      55 ..     108     134 ..      86     142 .. 0.77
   2 !    8.4   0.0    0.0047      0.34     134     181 ..     201     251 ..     189     268 .. 0.79

  Alignments for each domain:
  == domain 1    score: 8.6 bits;  conditional E-value: 0.004
   TIGR00960  29 GelvflvGhsGaGkstllklilgiekp 55 
                   +  ++G+ G+Gkstll ++l+ +++
  MMETSP1137-20121227|6097_1 108 RGIFAIAGKNGCGKSTLLSILLACARS 134
                 4455699*************9998765 PP

  == domain 2    score: 8.4 bits;  conditional E-value: 0.0047
   TIGR00960 134 alPvqlsgGeqqrvaiaravvnk...PallladePtgnlddelsrdilell 181
                 ++   lsgG++ +  + r+v  +   P++ll de  + ld+     +++ +
  MMETSP1137-20121227|6097_1 201 DYCASLSGGQRSKFELLRSVFLRpscPPVLLLDEAFAALDPLSKTLVMRKV 251
                 55678***************977222579***********98877777755 PP

>> TIGR02633  xylG: D-xylose ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.4   0.0   0.00047     0.035      21      49 ..     102     130 ..      88     141 .. 0.83
   2 ?    5.1   0.0     0.019       1.4     401     457 ..     203     262 ..     189     273 .. 0.85

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 0.00047
   TIGR02633  21 dlklraGeivslcGenGaGkstlmkvlsg 49 
                 +l+l +  i ++ G+nG+Gkstl+ +l +
  MMETSP1137-20121227|6097_1 102 ALELPPRGIFAIAGKNGCGKSTLLSILLA 130
                 48899999******************976 PP

  == domain 2    score: 5.1 bits;  conditional E-value: 0.019
   TIGR02633 401 iarlsGGnqqkavlakllllnpr...vlildeptrGvdvGakyeiyklinqlaqeGvaii 457
                  a+lsGG++ k  l + + l+p    vl+lde    +d  +k  + + + + ++  +a++
  MMETSP1137-20121227|6097_1 203 CASLSGGQRSKFELLRSVFLRPScppVLLLDEAFAALDPLSKTLVMRKVRAHCAASLALV 262
                 589*********999999998644449***********9999999999988888888877 PP

>> TIGR03415  ABC_choXWV_ATP: choline ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.0       1.3        94      51      68 ..     109     126 ..      94     132 .. 0.79
   2 !   15.6   0.0   1.8e-05    0.0013     158     201 ..     199     245 ..     192     250 .. 0.82

  Alignments for each domain:
  == domain 1    score: -0.4 bits;  conditional E-value: 1.3
   TIGR03415  51 eilvlmGlsGsGkssllr 68 
                  i  + G  G Gks+ll 
  MMETSP1137-20121227|6097_1 109 GIFAIAGKNGCGKSTLLS 126
                 57888999********96 PP

  == domain 2    score: 15.6 bits;  conditional E-value: 1.8e-05
   TIGR03415 158 adkkvgelsGGmqqrvGlarafate...adillmdePfsaldPlira 201
                 +d +   lsGG + +  l r++ +     ++ll+de f+aldPl ++
  MMETSP1137-20121227|6097_1 199 HDDYCASLSGGQRSKFELLRSVFLRpscPPVLLLDEAFAALDPLSKT 245
                 4678999*************9766422259*************9765 PP

>> TIGR00955  3a01204: pigment precursor permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.6   0.0    0.0072      0.53      53      72 ..     110     129 ..     104     136 .. 0.86
   2 !    7.3   0.0    0.0045      0.33     162     213 ..     201     255 ..     191     267 .. 0.80

  Alignments for each domain:
  == domain 1    score: 6.6 bits;  conditional E-value: 0.0072
   TIGR00955  53 llAvlGsSGaGKtTLlnala 72 
                 + A+ G  G GK+TLl++l 
  MMETSP1137-20121227|6097_1 110 IFAIAGKNGCGKSTLLSILL 129
                 689**************985 PP

  == domain 2    score: 7.3 bits;  conditional E-value: 0.0045
   TIGR00955 162 grvkglSgGerkRlalasell...tdPilLfcDEPTsGLDsfsaasvvkvLkkla 213
                 +   +lSgG+r +  l   +    ++P++L++DE  + LD  s + v++ ++  +
  MMETSP1137-20121227|6097_1 201 DYCASLSGGQRSKFELLRSVFlrpSCPPVLLLDEAFAALDPLSKTLVMRKVRAHC 255
                 55679********999888764556899**************9999988777655 PP

>> TIGR03269  met_CoM_red_A2: methyl coenzyme M reductase system, component A2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   0.0     0.019       1.4     304     332 ..     102     130 ..      88     140 .. 0.76
   2 !    7.6   0.0    0.0035      0.26     424     469 ..     202     250 ..     158     267 .. 0.69

  Alignments for each domain:
  == domain 1    score: 5.2 bits;  conditional E-value: 0.019
   TIGR03269 304 slevkekeifGlvGtsGaGkttlskilaG 332
                  le+  + if + G+ G Gk+tl  il+ 
  MMETSP1137-20121227|6097_1 102 ALELPPRGIFAIAGKNGCGKSTLLSILLA 130
                 46677788999999999999999888765 PP

  == domain 2    score: 7.6 bits;  conditional E-value: 0.0035
   TIGR03269 424 lpdelseGerhrvalaq.vlik..eprivildeptGtmdpitkvkvaes 469
                 +   ls G+r +  l + v+++   p +++lde   ++dp++k+ v + 
  MMETSP1137-20121227|6097_1 202 YCASLSGGQRSKFELLRsVFLRpsCPPVLLLDEAFAALDPLSKTLVMRK 250
                 5556666666666543314444223556666666666666666555443 PP

>> TIGR01194  cyc_pep_trnsptr: cyclic peptide transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.0   0.0   0.00067     0.049     369     389 ..     110     130 ..      90     136 .. 0.84
   2 ?    2.3   0.0      0.15        11     468     506 ..     204     245 ..     196     252 .. 0.78

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 0.00067
   TIGR01194 369 lvyivGenGcGkstliklllG 389
                 +  i G+nGcGkstl+ +ll 
  MMETSP1137-20121227|6097_1 110 IFAIAGKNGCGKSTLLSILLA 130
                 66799***********99986 PP

  == domain 2    score: 2.3 bits;  conditional E-value: 0.15
   TIGR01194 468 tdlstGqrkrlalvn.ayleer..pvllldewaadqdpafkr 506
                 ++ls Gqr ++ l+   +l     pvlllde  a  dp  k 
  MMETSP1137-20121227|6097_1 204 ASLSGGQRSKFELLRsVFLRPScpPVLLLDEAFAALDPLSKT 245
                 689*******999861577653449*******9999997775 PP

>> TIGR00957  MRP_assoc_pro: multi drug resistance-associated protein (MRP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.3   0.0   0.00092     0.067     659     686 ..     103     130 ..      89     135 .. 0.86
   2 ?    3.1   0.0     0.035       2.6    1421    1467 ..     205     254 ..     174     266 .. 0.70

  Alignments for each domain:
  == domain 1    score: 8.3 bits;  conditional E-value: 0.00092
   TIGR00957 659 lsipegalvavvgqvgcgkssllsalla 686
                 l++p   + a+ g+ gcgks+lls lla
  MMETSP1137-20121227|6097_1 103 LELPPRGIFAIAGKNGCGKSTLLSILLA 130
                 678888899*****************98 PP

  == domain 2    score: 3.1 bits;  conditional E-value: 0.035
   TIGR00957 1421 nlsvgqrqlvclaral.lrkt..kilvldeataavdletdnliqstirtq 1467
                   ls gqr    l r++ lr +   +l+ldea aa+d  +  l+   +r+ 
  MMETSP1137-20121227|6097_1  205 SLSGGQRSKFELLRSVfLRPScpPVLLLDEAFAALDPLSKTLVMRKVRAH 254 
                  57777777776666542555422477788888888877777777777765 PP

>> TIGR03740  galliderm_ABC: lantibiotic protection ABC transporter, ATP-binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.2   0.0   0.00031     0.023      19      47 ..     101     129 ..      86     136 .. 0.79
   2 ?    0.9   0.0      0.87        64     143     159 ..     227     243 ..     210     259 .. 0.88

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 0.00031
   TIGR03740  19 vslkvkknsvygllGpnGaGkstllkllt 47 
                  +l+++ + ++++ G nG+Gkstll +l 
  MMETSP1137-20121227|6097_1 101 DALELPPRGIFAIAGKNGCGKSTLLSILL 129
                 358899999****************9986 PP

  == domain 2    score: 0.9 bits;  conditional E-value: 0.87
   TIGR03740 143 PkllildePtnGldPlG 159
                 P +l+lde    ldPl 
  MMETSP1137-20121227|6097_1 227 PPVLLLDEAFAALDPLS 243
                 889************86 PP

>> TIGR03411  urea_trans_UrtD: urea ABC transporter, ATP-binding protein UrtD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.0   0.0    0.0015      0.11      18      53 ..      98     133 ..      86     144 .. 0.82
   2 ?    2.8   0.0      0.23        17     137     174 ..     199     239 ..     183     263 .. 0.79

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 0.0015
   TIGR03411  18 lndlslsveegelrviiGpnGaGkttllDvitGktr 53 
                 +n  +l++ ++ + +i G nG Gk+tll ++   +r
  MMETSP1137-20121227|6097_1  98 VNIDALELPPRGIFAIAGKNGCGKSTLLSILLACAR 133
                 55567889999999**************99876555 PP

  == domain 2    score: 2.8 bits;  conditional E-value: 0.23
   TIGR03411 137 adkkaglLshGqkqwLeigmllvqe...pkllllDePvaGm 174
                 +d   ++Ls Gq+   e+   +  +   p +lllDe  a +
  MMETSP1137-20121227|6097_1 199 HDDYCASLSGGQRSKFELLRSVFLRpscPPVLLLDEAFAAL 239
                 5677899******999986555444112679*****99976 PP

>> TIGR03465  HpnD: squalene synthase HpnD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.5   0.0   0.00016     0.012      24      76 ..       7      59 ..       2      69 .. 0.80

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 0.00016
   TIGR03465 24 ltalyAfcrevddivdeeldpevkqakLdwwraeidrlyaGapehpvakaLad 76
                +  l+ f+r v+d+vd  l ++ ++akL ++ra++ +l++  ++ + a aL +
  MMETSP1137-20121227|6097_1  7 IADLWLFSRVVEDTVDTLLMRSRAEAKLSRVRADVLKLQTLLAQIRHATALPP 59
                566888*****************************999876555555556655 PP

>> TIGR00618  sbcc: exonuclease SbcC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.4   0.0   0.00016     0.011      26      44 ..     106     125 ..      97     130 .. 0.83

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 0.00016
   TIGR00618  26 g.lklfvicGktGaGKtsLl 44 
                 +  ++f+i Gk+G GK++Ll
  MMETSP1137-20121227|6097_1 106 PpRGIFAIAGKNGCGKSTLL 125
                 4478***************9 PP

>> TIGR01715  phage_lam_T: phage tail assembly protein T
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   0.00027      0.02      45     110 ..     231     297 ..     219     298 .. 0.84

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 0.00027
   TIGR01715  45 lldaefstlkaavlslvtgdkeld.aedfslltpaheeeevekekeddellekaaGi.aGGvrygpds 110
                 lld  f++l     +lv+     + a++++l+t  h +++  + + d+el ++++    G +r+g+d+
  MMETSP1137-20121227|6097_1 231 LLDEAFAALDPLSKTLVMRKVRAHcAASLALVT-YHADPDDARADADEELCAVGKRFfDGIIRFGADG 297
                 79**************99876555167788887.99999999999********998615668****98 PP

>> TIGR00929  VirB4_CagE: type IV secretion/conjugal transfer ATPase, VirB4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00026     0.019     438     462 ..     109     133 ..      97     141 .. 0.87

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 0.00026
   TIGR00929 438 GhTlIfGptgsGKTvllnfllaqlq 462
                 G  +I G++g GK++ll++lla ++
  MMETSP1137-20121227|6097_1 109 GIFAIAGKNGCGKSTLLSILLACAR 133
                 5668*****************9776 PP

>> TIGR01192  chvA: glucan exporter ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   0.0    0.0012     0.085     469     508 ..     203     245 ..     108     265 .. 0.82

  Alignments for each domain:
  == domain 1    score: 9.2 bits;  conditional E-value: 0.0012
   TIGR01192 469 gnrlsggerqrlaiarail.k..napilvldeatsaldvetea 508
                  + lsgg+r +  + r+++ +    p+l+ldea +ald  ++ 
  MMETSP1137-20121227|6097_1 203 CASLSGGQRSKFELLRSVFlRpsCPPVLLLDEAFAALDPLSKT 245
                 578*************9862322469***********965554 PP

>> TIGR01193  bacteriocin_ABC: ABC-type bacteriocin transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.0      0.63        46     497     521 ..     105     129 ..      87     134 .. 0.78
   2 ?    8.1   0.0    0.0024      0.18     610     651 ..     204     248 ..     192     262 .. 0.82

  Alignments for each domain:
  == domain 1    score: 0.1 bits;  conditional E-value: 0.63
   TIGR01193 497 ikknekitlvGlsGsGkstlakllv 521
                 +      ++ G  G Gkstl  +l+
  MMETSP1137-20121227|6097_1 105 LPPRGIFAIAGKNGCGKSTLLSILL 129
                 555667899***********98875 PP

  == domain 2    score: 8.1 bits;  conditional E-value: 0.0024
   TIGR01193 610 ssisgGqkqrlalaral.lsds..kvlildestsnldlltekkiv 651
                 +s+sgGq+ +  l r++ l +s   vl+lde+ + ld l    ++
  MMETSP1137-20121227|6097_1 204 ASLSGGQRSKFELLRSVfLRPScpPVLLLDEAFAALDPLSKTLVM 248
                 79*************98345554479***********98776655 PP

>> TIGR01271  CFTR_protein: cystic fibrosis transmembrane conductor regulator (CFTR)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.0     0.057       4.2    1249    1267 ..     112     130 ..      87     140 .. 0.75
   2 ?    4.8   0.0     0.011      0.81    1353    1396 ..     205     251 ..     195     266 .. 0.60

  Alignments for each domain:
  == domain 1    score: 2.4 bits;  conditional E-value: 0.057
   TIGR01271 1249 gllgrtgsgkstllsallr 1267
                   + g+ g+gkstlls ll 
  MMETSP1137-20121227|6097_1  112 AIAGKNGCGKSTLLSILLA 130 
                  4567777777777777765 PP

  == domain 2    score: 4.8 bits;  conditional E-value: 0.011
   TIGR01271 1353 vlsnghkqlmclarsil...skakillldepsafldpvtlqiirktl 1396
                   ls g +  + l rs++   s   +lllde  a ldp++  ++ + +
  MMETSP1137-20121227|6097_1  205 SLSGGQRSKFELLRSVFlrpSCPPVLLLDEAFAALDPLSKTLVMRKV 251 
                  46666666666777776233334577777777777777665444333 PP

>> TIGR03522  GldA_ABC_ATP: gliding motility-associated ABC transporter ATP-binding subunit GldA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.0     0.056       4.1      27      49 ..     107     129 ..      87     136 .. 0.81
   2 ?    4.4   0.0     0.063       4.6     133     179 ..     205     255 ..     196     265 .. 0.75

  Alignments for each domain:
  == domain 1    score: 4.6 bits;  conditional E-value: 0.056
   TIGR03522  27 kGeivGflGPnGaGkstlmkilt 49 
                 +  i    G nG Gkstl+ il 
  MMETSP1137-20121227|6097_1 107 PRGIFAIAGKNGCGKSTLLSILL 129
                 55688889***********9985 PP

  == domain 2    score: 4.4 bits;  conditional E-value: 0.063
   TIGR03522 133 alskGyrqrvGlakallhd...PkvlildePttGldP.nqlveirevikei 179
                  ls G r +  l +++      P vl+lde  + ldP  + + +r+v ++ 
  MMETSP1137-20121227|6097_1 205 SLSGGQRSKFELLRSVFLRpscPPVLLLDEAFAALDPlSKTLVMRKVRAHC 255
                 6888888888888888766122569************54677778876655 PP

>> TIGR01257  rim_protein: rim ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.0      0.21        16     957     978 ..     109     130 ..      89     141 .. 0.76
   2 ?    5.9   0.0    0.0033      0.24    2067    2113 ..     202     251 ..     191     275 .. 0.74

  Alignments for each domain:
  == domain 1    score: -0.1 bits;  conditional E-value: 0.21
   TIGR01257 957 qitaflghngagktttlsiltg 978
                  i a+ g+ng+gk+t lsil  
  MMETSP1137-20121227|6097_1 109 GIFAIAGKNGCGKSTLLSILLA 130
                 5788999999999999999864 PP

  == domain 2    score: 5.9 bits;  conditional E-value: 0.0033
   TIGR01257 2067 lagtysggnkrkls..taial.igcpplvlldepttgmdpqarrmlwnti 2113
                   + + sgg++ k+    ++ l   cpp++llde  + +dp ++ ++   +
  MMETSP1137-20121227|6097_1  202 YCASLSGGQRSKFEllRSVFLrPSCPPVLLLDEAFAALDPLSKTLVMRKV 251 
                  556788998887541134444258****************9998877655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (338 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       203  (0.0494881); expected 82.0 (0.02)
Passed bias filter:                      194  (0.047294); expected 82.0 (0.02)
Passed Vit filter:                        95  (0.0231594); expected 4.1 (0.001)
Passed Fwd filter:                        56  (0.0136519); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              56  [number of targets reported over threshold]
# CPU time: 0.75u 0.16s 00:00:00.91 Elapsed: 00:00:00.87
# Mc/sec: 512.79
//
Query:       MMETSP1137-20121227|6098_1  [L=202]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.36    9.4   3.8       0.47    9.0   2.1    1.6  2  TIGR02747 TraV: type IV conjugative transfer system protein TraV


Domain annotation for each model (and alignments):
>> TIGR02747  TraV: type IV conjugative transfer system protein TraV
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   2.1   0.00011      0.47      21      96 ..       8      87 ..       5     122 .. 0.73
   2 ?   -2.0   0.0      0.29   1.2e+03      25      52 ..     134     161 ..     125     165 .. 0.78

  Alignments for each domain:
  == domain 1    score: 9.0 bits;  conditional E-value: 0.00011
   TIGR02747 21 glnsdfeCeat.egvgtcatmdqvnedkkrleqqeevkkd...llegeekeeavlvestvtlakaktvaakkslqktpai 96
                ++  d +C +t + vg c++ +  +    r  q+e + ++    + g ++e++       ++ k+++++a+ +++ t++ 
  MMETSP1137-20121227|6098_1  8 PCPRDARCIKTkGHVGSCKHAKSQQRSSARESQKERAAHLaamQQLGAKREQQAAARMEKSTKKSREGDAQSKGHDTAKA 87
                677899*****8889****9887666655666666665556855667777777777777777779999999888777654 PP

  == domain 2    score: -2.0 bits;  conditional E-value: 0.29
   TIGR02747  25 dfeCeategvgtcatmdqvnedkkrleq 52 
                 d eC a+++ +   + + ++  ++rleq
  MMETSP1137-20121227|6098_1 134 DKECAAPQQAAALEELERIRLPRQRLEQ 161
                 5689999988888888888888888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (202 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       255  (0.0621648); expected 82.0 (0.02)
Passed bias filter:                      143  (0.034861); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.23u 0.15s 00:00:00.38 Elapsed: 00:00:00.35
# Mc/sec: 761.77
//
Query:       MMETSP1137-20121227|6102_1  [L=100]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (100 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        34  (0.00828864); expected 82.0 (0.02)
Passed bias filter:                       34  (0.00828864); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.12s 00:00:00.26 Elapsed: 00:00:00.26
# Mc/sec: 507.65
//
Query:       MMETSP1137-20121227|6103_1  [L=69]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (69 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        37  (0.00901999); expected 82.0 (0.02)
Passed bias filter:                       34  (0.00828864); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.19s 00:00:00.33 Elapsed: 00:00:00.31
# Mc/sec: 293.78
//
Query:       MMETSP1137-20121227|6105_1  [L=413]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.9e-05   18.9   0.1     0.0027   13.8   0.0    2.2  2  TIGR03345 VI_ClpV1: type VI secretion ATPase, ClpV1 family
     0.0002   17.7   0.0     0.0028   13.9   0.0    2.0  2  TIGR03346 chaperone_ClpB: ATP-dependent chaperone protein ClpB
    0.00035   18.1   0.0    0.00072   17.1   0.0    1.5  1  TIGR00455 apsK: adenylylsulfate kinase
     0.0023   15.3   0.0     0.0047   14.3   0.0    1.4  1  TIGR03420 DnaA_homol_Hda: DnaA regulatory inactivator Hda


Domain annotation for each model (and alignments):
>> TIGR03345  VI_ClpV1: type VI secretion ATPase, ClpV1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    2.7   0.0    0.0059         6     221     241 ..      43      63 ..      39      68 .. 0.89
   2 !   13.8   0.0   2.6e-06    0.0027     592     640 ..      91     138 ..      72     144 .. 0.85

  Alignments for each domain:
  == domain 1    score: 2.7 bits;  conditional E-value: 0.0059
   TIGR03345 221 ktAvveglAlriaagdvPeal 241
                 +t vveg A ++++g++P++l
  MMETSP1137-20121227|6105_1  43 QTIVVEGGAYKVVKGQIPANL 63 
                 699***************987 PP

  == domain 2    score: 13.8 bits;  conditional E-value: 2.6e-06
   TIGR03345 592 pkkPlgvFllvGpsGvGktetalalAellyGgeqnlitinmsefqeaHt 640
                 ++kP+ v  + Gps vGk   + a A  l+G  qn + ++ +ef+e H 
  MMETSP1137-20121227|6105_1  91 NEKPI-VLWVFGPSAVGKSFLSNAKASVLFGNLQNAVLVDGAEFREVHA 138
                 45666.55677************************************96 PP

>> TIGR03346  chaperone_ClpB: ATP-dependent chaperone protein ClpB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.0     0.013        13     206     228 ..      42      64 ..      38      83 .. 0.84
   2 !   13.9   0.0   2.7e-06    0.0028     592     639 ..      92     138 ..      67     144 .. 0.86

  Alignments for each domain:
  == domain 1    score: 1.7 bits;  conditional E-value: 0.013
   TIGR03346 206 GktaiveGlaqrivngdvPeslk 228
                  +t +veG a ++v+g++P +l 
  MMETSP1137-20121227|6105_1  42 EQTIVVEGGAYKVVKGQIPANLL 64 
                 5799***************9874 PP

  == domain 2    score: 13.9 bits;  conditional E-value: 2.7e-06
   TIGR03346 592 nrPigsflflGptGvGktelakalaeflfddeealvridmseymekhs 639
                 ++Pi  ++f Gp  vGk  l+ a a++lf + ++ v +d +e+ e h+
  MMETSP1137-20121227|6105_1  92 EKPIVLWVF-GPSAVGKSFLSNAKASVLFGNLQNAVLVDGAEFREVHA 138
                 578877776.***********************************997 PP

>> TIGR00455  apsK: adenylylsulfate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.0     7e-07   0.00072      15      59 ..      91     135 ..      77     142 .. 0.89

  Alignments for each domain:
  == domain 1    score: 17.1 bits;  conditional E-value: 7e-07
   TIGR00455  15 kqksvvlWltGlsgsGkstianalekkLeekglrvevLDGDnvrh 59 
                 ++k +vlW+ G+s+ Gks ++na +  L+ +  ++ ++DG + r+
  MMETSP1137-20121227|6105_1  91 NEKPIVLWVFGPSAVGKSFLSNAKASVLFGNLQNAVLVDGAEFRE 135
                 67889************************999999999**98885 PP

>> TIGR03420  DnaA_homol_Hda: DnaA regulatory inactivator Hda
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.0   4.5e-06    0.0047      16      80 ..      70     136 ..      65     153 .. 0.84

  Alignments for each domain:
  == domain 1    score: 14.3 bits;  conditional E-value: 4.5e-06
   TIGR03420  16 nFlagenaellaalrel..aeakaerllylwGesgsGksHLLqAacaaaeeagksaiylplkelaql 80 
                 +F a+e+a++ a++++    ++++  +l+++G+s++Gks+L +A ++ +  + ++a+ ++ +e  ++
  MMETSP1137-20121227|6105_1  70 DFTAAEKAAIFARIHKSiaPSNEKPIVLWVFGPSAVGKSFLSNAKASVLFGNLQNAVLVDGAEFREV 136
                 7999999*******99966667777788899**************9999999999999998887665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (413 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       164  (0.0399805); expected 82.0 (0.02)
Passed bias filter:                      115  (0.0280351); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.37u 0.14s 00:00:00.51 Elapsed: 00:00:00.38
# Mc/sec: 1434.51
//
Query:       MMETSP1137-20121227|6106_1  [L=403]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (403 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        60  (0.014627); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.16s 00:00:00.44 Elapsed: 00:00:00.39
# Mc/sec: 1363.89
//
Query:       MMETSP1137-20121227|6107_1  [L=476]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.19    8.5  10.1        0.3    7.9   7.0    1.2  1  TIGR00237 xseA: exodeoxyribonuclease VII, large subunit


Domain annotation for each model (and alignments):
>> TIGR00237  xseA: exodeoxyribonuclease VII, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   7.0   7.2e-05       0.3     251     353 ..      94     189 ..      86     235 .. 0.60

  Alignments for each domain:
  == domain 1    score: 7.9 bits;  conditional E-value: 7.2e-05
   TIGR00237 251 eivvrnqdellqrlksaevrleraldtllaqkkarleqlaaslkrqspknklaakeakleklekrlqaalekqlertrqkktrltkrleqlnpspklkraqtr 353
                   +v +++ ll+  ++a+vrlera+   l+q+++ l+q +a+  +   + +  ++e+    + +r   a  + ++++r+  +r  +rl+ql  +  l   +t 
  MMETSP1137-20121227|6107_1  94 QQAVAEKQKLLRERNAANVRLERAMSVGLQQRQNILRQQEARSVH-GQQLQALRNEL---AVVRREVDAHARVVNELRHDIRRSRQRLNQLSQHS-LV--RTP 189
                 55678999**************************99987766432.22233333333...34444555556667777777777777777765555.33..222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (476 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       186  (0.0453437); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.13s 00:00:00.48 Elapsed: 00:00:00.49
# Mc/sec: 1282.18
//
Query:       MMETSP1137-20121227|6108_1  [L=914]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (914 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        70  (0.0170648); expected 82.0 (0.02)
Passed bias filter:                       36  (0.00877621); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.51u 0.16s 00:00:00.67 Elapsed: 00:00:00.73
# Mc/sec: 1652.58
//
Query:       MMETSP1137-20121227|6109_1  [L=662]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.21    7.6  10.5       0.25    7.4   7.3    1.1  1  TIGR00934 2a38euk: potassium uptake protein, Trk family


Domain annotation for each model (and alignments):
>> TIGR00934  2a38euk: potassium uptake protein, Trk family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   7.3     6e-05      0.25     352     432 ..     570     649 ..     387     662 .] 0.54

  Alignments for each domain:
  == domain 1    score: 7.4 bits;  conditional E-value: 6e-05
   TIGR00934 352 leeldrakdfqkmveknvkaakrkkknfkkreanlklfeksryakksdrneedngnkkdasksneseevsldseenaypty 432
                 l++ ++++++q+ +++ ++++++++++ +++ +++   ++ + +++ ++++++++ ++++ ++++ +  + +++++++   
  MMETSP1137-20121227|6109_1 570 LQQQQHQQQHQHKHKQ-HQQQHQHQHQHQHQPQHQPQHQHQQQQHQHQHQQQHQQLQQHQQHQHQXQXXQHQHQQQHQQLQ 649
                 1111111111111111.1222222222222222222222222222222222222221111111111111111111111111 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (662 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       689  (0.167967); expected 82.0 (0.02)
Passed bias filter:                      164  (0.0399805); expected 82.0 (0.02)
Passed Vit filter:                        71  (0.0173086); expected 4.1 (0.001)
Passed Fwd filter:                        21  (0.00511945); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.86u 0.14s 00:00:01.00 Elapsed: 00:00:00.99
# Mc/sec: 882.59
//
Query:       MMETSP1137-20121227|6110_1  [L=302]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.2e-06   23.3   0.0    8.2e-06   23.3   0.0    1.8  2  TIGR00932 2a37: transporter, monovalent cation:proton antiporter-2 (CPA2) family
     0.0062   13.6   0.0       0.01   13.0   0.0    1.3  1  TIGR02853 spore_dpaA: dipicolinic acid synthetase, A subunit


Domain annotation for each model (and alignments):
>> TIGR00932  2a37: transporter, monovalent cation:proton antiporter-2 (CPA2) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.3   0.0     4e-09   8.2e-06     241     275 .]       1      34 [.       1      34 [. 0.97
   2 ?   -1.5   0.3      0.15     3e+02     116     126 ..      59      69 ..      39     124 .. 0.54

  Alignments for each domain:
  == domain 1    score: 23.3 bits;  conditional E-value: 4e-09
   TIGR00932 241 lseseyrhkleeklepikygvliplFFisvGlsld 275
                 l+e++yr ++e++++p++ g+l++lFFi++G s+d
  MMETSP1137-20121227|6110_1   1 LAETKYRFQIEADIAPFR-GLLLGLFFITTGFSID 34 
                 789***************.*************998 PP

  == domain 2    score: -1.5 bits;  conditional E-value: 0.15
   TIGR00932 116 tavvvqvLkel 126
                 ++++v ++++l
  MMETSP1137-20121227|6110_1  59 LVLLVCMINNL 69 
                 33333222222 PP

>> TIGR02853  spore_dpaA: dipicolinic acid synthetase, A subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   0.0   4.9e-06      0.01     133     194 ..     134     193 ..     123     201 .. 0.78

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 4.9e-06
   TIGR02853 133 taeGaimlaiestdftihgsrvlvlGlGrtGktiarllsalgakvsvaareskdlarilelg 194
                  a G +ml   std    g  vlv G+Gr+G++i++ll+a   + +    +   +ar+ + g
  MMETSP1137-20121227|6110_1 134 KAKGGLML--PSTDDHDQGDYVLVCGFGRVGQAICELLTARLVRYKAFDMDPYRVARARDRG 193
                 56666654..57777788999*****************998888777777777777776655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (302 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       141  (0.0343735); expected 82.0 (0.02)
Passed bias filter:                      101  (0.0246221); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.27u 0.18s 00:00:00.45 Elapsed: 00:00:00.33
# Mc/sec: 1207.90
//
Query:       MMETSP1137-20121227|6111_1  [L=184]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (184 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        57  (0.0138957); expected 82.0 (0.02)
Passed bias filter:                       33  (0.00804486); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.15s 00:00:00.32 Elapsed: 00:00:00.39
# Mc/sec: 622.72
//
Query:       MMETSP1137-20121227|6112_1  [L=779]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (779 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        97  (0.023647); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.50u 0.16s 00:00:00.66 Elapsed: 00:00:00.56
# Mc/sec: 1836.06
//
Query:       MMETSP1137-20121227|6114_1  [L=94]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (94 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        72  (0.0175524); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.14s 00:00:00.27 Elapsed: 00:00:00.27
# Mc/sec: 459.52
//
Query:       MMETSP1137-20121227|6115_1  [L=338]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.6e-59  196.8   0.0    6.2e-59  196.4   0.0    1.1  1  TIGR00187 ribE: riboflavin synthase, alpha subunit


Domain annotation for each model (and alignments):
>> TIGR00187  ribE: riboflavin synthase, alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  196.4   0.0   1.5e-62   6.2e-59       2     199 ..     105     312 ..     104     319 .. 0.94

  Alignments for each domain:
  == domain 1    score: 196.4 bits;  conditional E-value: 1.5e-62
   TIGR00187   2 FtGiveelakvksikekale..........isltvkladkiledlelGdSiAvnGvCLtvteinkdsfsvdlspetlkrtnlgdlkegtaVniEralkadaklgGHfvsGHvdtvaeilkieeeeNavqlsfklrdsellkyivekGsiavdGiSLtia..eveeksftvslipetleetllkkkklgdkVNiEvDllgkavaktlektk 199
                 F+Givee+++vk  + k+             +l+v+ +  +l++  lG SiAvnGvCLtvte+ +dsf+++lspetl+rtnl++l +g  Vn+Eral+ad++  GHfv+GHvd v+ i+++++++ a+ + +k+    l++yiv+kG+ia+dG+SLt+   +v +++f   l+ +t+++++l+ k++gd VN+EvD+++k+v++ +  ++
  MMETSP1137-20121227|6115_1 105 FSGIVEEIGEVKRLELKKGLklwdgsvgegWELQVGAQ-TVLDGAYLGCSIAVNGVCLTVTEFDGDSFTAGLSPETLRRTNLQELPSGAPVNLERALAADGRNSGHFVQGHVDDVGVIEEMRPDGEALWIRVKA-PPRLMPYIVPKGFIAIDGTSLTVCntNVADSWFDFMLVAYTQSKIILPSKQVGDAVNLEVDVTAKYVERSMGAML 312
                 9***********99877665689999998888899877.9*********************************************************************************************9.899********************733689***************************************9887666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (338 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       120  (0.029254); expected 82.0 (0.02)
Passed bias filter:                      118  (0.0287665); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.29u 0.17s 00:00:00.46 Elapsed: 00:00:00.72
# Mc/sec: 619.62
//
Query:       MMETSP1137-20121227|6116_1  [L=74]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (74 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        58  (0.0141394); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.16s 00:00:00.31 Elapsed: 00:00:00.33
# Mc/sec: 295.98
//
Query:       MMETSP1137-20121227|6117_1  [L=384]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (384 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        67  (0.0163335); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.12s 00:00:00.40 Elapsed: 00:00:00.40
# Mc/sec: 1267.10
//
Query:       MMETSP1137-20121227|6118_1  [L=357]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-93  311.4   0.0    1.6e-93  311.2   0.0    1.0  1  TIGR01464 hemE: uroporphyrinogen decarboxylase
      2e-17   61.3   0.0    2.5e-17   61.0   0.0    1.1  1  TIGR01463 mtaA_cmuA: methyltransferase, MtaA/CmuA family


Domain annotation for each model (and alignments):
>> TIGR01464  hemE: uroporphyrinogen decarboxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  311.2   0.0   7.7e-97   1.6e-93       2     338 .]       4     354 ..       3     354 .. 0.91

  Alignments for each domain:
  == domain 1    score: 311.2 bits;  conditional E-value: 7.7e-97
   TIGR01464   2 llkalkgekvdrvPvWlmRQaGRylpeYrelrekagdflelckdpdlavevtlqPlrrlgvDAaIlFsDIlvilealglelefeegkgpvleepireaedvkklke...vdvekeleyvleaikllreelee.evpliGFaGaPfTlasYlieG..ggskdlakakkflyeepealkaLlekltdatieYlseQvkaGadavqiFdswagaLseedfeefvlpylkkiieelkkr.ekvPvilfa.....kgagelleelaetgadvvglDwsvdlkeaaklvkkk....valQGnldPavllask.ealeekvekilealkegksryifNlGHGilpetppenvkalvelvhe 338
                 ll+a++g+kv+r+PvW+mRQaGR ++ Yr+l + ++ f+e ++ p +  ev++qP r+++ D++IlFsDIl++l+a+g+++ + e  g+++   ir+ + ++k+ +   + +e+ +++v+e +++lr+el++  ++++GF G PfTl +Yl+eG  g+++ +a+++k+  ++pe ++++l+ l++ +++Y ++Q+++Ga++vq+Fdswag+L++++fee+++p  +++++ +++  ++vPvi+++     ++ g ++e+la++g+ +v++D ++d++ea++++       v lQGnldP +l  ++ e + ek+++il+a+++  +++++NlGHGi   tp+ + + +v++v+e
  MMETSP1137-20121227|6118_1   4 LLRAARGQKVERTPVWMMRQAGRHMAVYRDLVKDYPTFRERSEIPHVSFEVSMQPYRAYKTDGVILFSDILTPLPAMGVDFAISEAGGIKIDP-IRTRAAFQKMLDsapFTPETDCSFVGEVLTKLRAELKGsGATVLGFIGLPFTLGTYLVEGatGTKNGFAEMRKLRETDPELMRDILSLLAERITQYAIYQIDSGAQVVQVFDSWAGHLTPDEFEEWAMPSQRQVVQGIREArPDVPVIIYMapdtySKEGGFIEKLAASGVSMVSVDHTIDISEARRRLDAAgyahVGLQGNLDPEILRDGTpEQIVEKTTEILRAAGN--KGHVMNLGHGIEATTPEPSAALFVKTVQE 354
                 79*****************************************************************************************95.6677777777654558999*****************985799*****************954456679***********************************************************************9955******9733333467889*************************99754333389**********9876267999999****8886..6************************9985 PP

>> TIGR01463  mtaA_cmuA: methyltransferase, MtaA/CmuA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.0   0.0   1.2e-20   2.5e-17       9     338 ..       4     355 ..       2     357 .] 0.76

  Alignments for each domain:
  == domain 1    score: 61.0 bits;  conditional E-value: 1.2e-20
   TIGR01463   9 llaAvekqrvdkvppcvvtqt....atvelmeecgaawpeAhsdaeamAklaiaayevvGleavrlpfdltveaEvlgCeldagkkkrPsvvksPapknladlevkenlllke.gripvvleaikilrekygde.lpiigslegPitlAsqligv....e....eflkylstdpdlakavlelaadiviayaklmveaGadviailDPvaSsdllspetykefvlpyqkklvaeikei..dsvtvlHiCgktsk....ilsdiaksGveglsvdekvgvaeakkvig....deislvGnldpvsvllnGtaekvkklakevleaG...vdivapgCdiasmtpleNlkalveackei 338
                 ll+A ++q+v++ p+ ++ q     a+ + + +   ++ e    + ++ ++ +++y+    + v+l  d+ ++  ++g +  + +     +  +P  +  a+ ++++   + +      v e    lr+  +++   + g ++ P+tl   l+ +    +    e+ k   tdp+l++++l l a+    ya  +++ Ga+v+++ D  a    l+p+ ++e+++p q+++v++i+e   d++ ++ +  +t       ++++a sGv  +svd+ +++ ea++ ++     ++ l Gnldp ++l +Gt+e++ +++ e+l a    + ++  g +i+ +tp+     +v++ +e 
  MMETSP1137-20121227|6118_1   4 LLRAARGQKVERTPVWMMRQAgrhmAVYRDLVKDYPTFRERSEIPHVSFEVSMQPYRAYKTDGVILFSDILTPLPAMGVDFAISE--AGGIKIDPIRTRAAFQKMLDSAPFTPeTDCSFVGEVLTKLRAELKGSgATVLGFIGLPFTLGTYLVEGatgtKngfaEMRKLRETDPELMRDILSLLAERITQYAIYQIDSGAQVVQVFDSWAGH--LTPDEFEEWAMPSQRQVVQGIREArpDVPVIIYMAPDTYSkeggFIEKLAASGVSMVSVDHTIDISEARRRLDaagyAHVGLQGNLDP-EILRDGTPEQIVEKTTEILRAAgnkGHVMNLGHGIEATTPEPSAALFVKTVQEF 355
                 6788888888888888776641111334444444555555666667788899999999999999999999999999986665554..456666699999999999999886651556666677788998877761557777888***9877654411113111134456689***********************************99976..99********************975579999999998864233368999***************999988654222246889*****8.79***************9975412257999**********98888888888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (357 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       119  (0.0290102); expected 82.0 (0.02)
Passed bias filter:                      115  (0.0280351); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.29u 0.14s 00:00:00.43 Elapsed: 00:00:00.42
# Mc/sec: 1121.91
//
Query:       MMETSP1137-20121227|6119_1  [L=417]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.035   11.6   0.0      0.056   11.0   0.0    1.2  1  TIGR03598 GTPase_YsxC: ribosome biogenesis GTP-binding protein YsxC
      0.054   10.7   0.0      0.085   10.0   0.0    1.2  1  TIGR03596 GTPase_YlqF: ribosome biogenesis GTP-binding protein YlqF
      0.063   10.1   0.0      0.088    9.6   0.0    1.1  1  TIGR03594 GTPase_EngA: ribosome-associated GTPase EngA


Domain annotation for each model (and alignments):
>> TIGR03598  GTPase_YsxC: ribosome biogenesis GTP-binding protein YsxC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   4.1e-05     0.056     102     162 ..     263     323 ..     255     338 .. 0.84

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 4.1e-05
   TIGR03598 102 kgvvllvDirhelkelDlellellkeakipvlvvltKaDklkkselkkalkkvkkelkkee 162
                 +g++++vD+rh+l +    l ++l++ ++p+l+ ++KaD +  ++l++ + ++++++  ++
  MMETSP1137-20121227|6119_1 263 HGICFVVDARHPLVHCADGLPAILASLRLPLLICFSKADLVPPEHLDEWKGRLARQFPAHQ 323
                 6899*************************************99999988888877777664 PP

>> TIGR03596  GTPase_YlqF: ribosome biogenesis GTP-binding protein YlqF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.0   6.2e-05     0.085      26      74 ..     266     316 ..     259     327 .. 0.89

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 6.2e-05
   TIGR03596  26 ievlDARiplssknpeleelvk..nkprlivlnkaDladpektkkwlkyfe 74 
                   v+DAR pl      l  +++  + p li ++kaDl+ pe+ ++w+  + 
  MMETSP1137-20121227|6119_1 266 CFVVDARHPLVHCADGLPAILAslRLPLLICFSKADLVPPEHLDEWKGRLA 316
                 569****************999666799******************98776 PP

>> TIGR03594  GTPase_EngA: ribosome-associated GTPase EngA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.0   6.4e-05     0.088     260     330 ..     264     333 ..     233     339 .. 0.85

  Alignments for each domain:
  == domain 1    score: 9.6 bits;  conditional E-value: 6.4e-05
   TIGR03594 260 vvllvlDategiseqDlkiaglileegkalvivvNKwDlvkdekeleelkkeleeklkflkfapivfiSAl 330
                  +++v+Da++++ +    +  ++++   +l+i++ K Dlv   ++l+e+k +l ++++  +   +v+ +A+
  MMETSP1137-20121227|6119_1 264 GICFVVDARHPLVHCADGLPAILASLRLPLLICFSKADLV-PPEHLDEWKGRLARQFPAHQLRGVVTFAAN 333
                 456899**********************************.****************99887777776664 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (417 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       117  (0.0285227); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.31u 0.15s 00:00:00.46 Elapsed: 00:00:00.33
# Mc/sec: 1667.86
//
Query:       MMETSP1137-20121227|6120_1  [L=752]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (752 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.47u 0.14s 00:00:00.61 Elapsed: 00:00:00.42
# Mc/sec: 2363.23
//
Query:       MMETSP1137-20121227|6121_1  [L=485]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (485 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       269  (0.0655778); expected 82.0 (0.02)
Passed bias filter:                      105  (0.0255973); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.15s 00:00:00.51 Elapsed: 00:00:00.50
# Mc/sec: 1280.29
//
Query:       MMETSP1137-20121227|6122_1  [L=121]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (121 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       154  (0.0375427); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.16s 00:00:00.32 Elapsed: 00:00:00.76
# Mc/sec: 210.14
//
Query:       MMETSP1137-20121227|6123_1  [L=322]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (322 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       106  (0.0258411); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.18s 00:00:00.43 Elapsed: 00:00:00.42
# Mc/sec: 1011.92
//
Query:       MMETSP1137-20121227|6124_1  [L=257]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.6e-12   42.5   0.2    1.5e-11   41.1   0.2    1.6  1  TIGR04075 bacter_Pnkp: polynucleotide kinase-phosphatase
    1.5e-08   32.2   0.0    7.1e-06   23.5   0.0    2.3  2  TIGR00668 apaH: bis(5'-nucleosyl)-tetraphosphatase (symmetrical)


Domain annotation for each model (and alignments):
>> TIGR04075  bacter_Pnkp: polynucleotide kinase-phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.1   0.2   7.1e-15   1.5e-11     221     422 ..       8     215 ..       2     236 .. 0.77

  Alignments for each domain:
  == domain 1    score: 41.1 bits;  conditional E-value: 7.1e-15
   TIGR04075 221 egrkavflGdlvdrGpdspdvlrlvmsmvkagaalcvpGnheekllrklrGrkvklthGlaetleqlaaeseefreevkefldglvshyvlddGklvvahaGlkeey.....qgrasgrvrefalyGettGetd.efG.lPv....rydWaadyrGkalvvyGhtpvkeaewvnnticidtGcvfGGkltalry....Perelvsvpaekvylepvk 422
                 e   +v+ Gdlv++Gp+s +vlrl +     g   +v Gnhe     +lrG++ + + G +  +++  + ++ ++++  +f+ gl   + + + +  v haGl   +            +r++ l  ++ G +  ++  l         Waa + G   v +Gh +  + +    +  +dtGcv+GG lta       P    vsv+a++ y  pv 
  MMETSP1137-20121227|6124_1   8 EDDAVVLAGDLVNKGPKSIEVLRLARYR---G-YSAVLGNHEFA---TLRGHAAR-RGGEEPGVAKKYEWTDGLTNSDLQFICGLPYTISIPEHNALVVHAGLVPGIpldqqSPVDMVTMRNLHLSENSDGMLGpKYAaLDEdqegSSAWAALWSGPQHVFFGHDAKRRFQEHRFATGLDTGCVYGGYLTAAILevgcPV-RYVSVKAARRYQIPVV 215
                 56679999****************9754...3.4589*****75...56676654.456677777778889999999*************************98654211002233456799999999999874355424431111467*****************************************9643112154.4789999999999875 PP

>> TIGR00668  apaH: bis(5'-nucleosyl)-tetraphosphatase (symmetrical)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.5   0.0   3.5e-09   7.1e-06      29     127 ..       9     106 ..       4     120 .. 0.77
   2 !    6.5   0.0    0.0005         1     223     256 ..     159     191 ..     137     210 .. 0.78

  Alignments for each domain:
  == domain 1    score: 23.5 bits;  conditional E-value: 3.5e-09
   TIGR00668  29 kdtlyltgdlvargdkslevlryvkslgdavrlvlgnhdlhllavalgikkvkpkdrldalleapd..adellnwlrrqpllvvdeekklvlahagispdw 127
                  d + l+gdlv +g+ks+evlr+ +  g ++  vlgnh++  l   +  ++      +   +e  d   +  l+++   p  +  +e++ +++hag+ p  
  MMETSP1137-20121227|6124_1   9 DDAVVLAGDLVNKGPKSIEVLRLARYRGYSA--VLGNHEFATLRGHAA-RRGGEEPGVAKKYEWTDglTNSDLQFICGLPYTISIPEHNALVVHAGLVPGI 106
                 68999**********************9886..9*****988766553.4444455566666666532455678888888888888888888888888865 PP

  == domain 2    score: 6.5 bits;  conditional E-value: 0.0005
   TIGR00668 223 ivfghwaslvdegtpegiyaldtgcvwgnrltll 256
                 + fgh a    +   +   +ldtgcv+g+ lt  
  MMETSP1137-20121227|6124_1 159 VFFGHDAKRRFQE-HRFATGLDTGCVYGGYLTAA 191
                 5666666544333.334568***********975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (257 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        88  (0.0214529); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.26u 0.13s 00:00:00.39 Elapsed: 00:00:00.36
# Mc/sec: 942.26
//
Query:       MMETSP1137-20121227|6125_1  [L=45]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (45 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        29  (0.00706972); expected 82.0 (0.02)
Passed bias filter:                       27  (0.00658216); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.14s 00:00:00.26 Elapsed: 00:00:00.40
# Mc/sec: 148.49
//
Query:       MMETSP1137-20121227|6126_1  [L=245]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (245 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        99  (0.0241346); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.17s 00:00:00.38 Elapsed: 00:00:00.38
# Mc/sec: 850.98
//
Query:       MMETSP1137-20121227|6127_1  [L=301]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.3e-06   24.0   2.6    4.3e-06   24.0   1.8    2.3  2  TIGR00599 rad18: DNA repair protein rad18
     0.0024   15.1   1.0     0.0024   15.1   0.7    2.5  3  TIGR00570 cdk7: CDK-activating kinase assembly factor MAT1
  ------ inclusion threshold ------
      0.079   10.4   2.9      0.061   10.7   0.3    2.0  2  TIGR00678 holB: DNA polymerase III, delta' subunit


Domain annotation for each model (and alignments):
>> TIGR00599  rad18: DNA repair protein rad18
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.0   1.8   3.2e-09   4.3e-06      39      71 ..       2      36 ..       1      54 [. 0.91
   2 ?   -1.9   6.3      0.23   3.2e+02      26      68 ..      82     120 ..      74     125 .. 0.81

  Alignments for each domain:
  == domain 1    score: 24.0 bits;  conditional E-value: 3.2e-09
   TIGR00599 39 PvltsCsHtFCslCiRrcLse..epkCPlCraedq 71
                P++ +C+HtFC  C+ r +s    + CPlCra+++
  MMETSP1137-20121227|6127_1  2 PIVNACGHTFCFWCLHRAMSGfgTSSCPLCRASFR 36
                99*****************9633789******998 PP

  == domain 2    score: -1.9 bits;  conditional E-value: 0.23
   TIGR00599  26 slRChvCkdffkaPvltsCsHtFCslCiRrcLseepkCPlCra 68 
                 ++ C  C     aP +  C+H  C  Ci + L     CP+C a
  MMETSP1137-20121227|6127_1  82 AFCCVGCALLAPAPRVLNCGHLVCGACIPS-L---ETCPACAA 120
                 6778889889999***************75.4...46777765 PP

>> TIGR00570  cdk7: CDK-activating kinase assembly factor MAT1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.7   1.8e-06    0.0024      22      54 ..       3      36 ..       1      40 [. 0.88
   2 ?   -1.0   2.3      0.14   1.9e+02      24      50 ..      98     119 ..      91     124 .. 0.78
   3 ?   -3.6   0.0       0.9   1.2e+03     170     191 ..     257     278 ..     251     283 .. 0.71

  Alignments for each domain:
  == domain 1    score: 15.1 bits;  conditional E-value: 1.8e-06
   TIGR00570 22 lvnvCghtlCesCvdllfv.rGsgsCpeCdtpLr 54
                +vn Cght+C  C  + ++  G++sCp C   +r
  MMETSP1137-20121227|6127_1  3 IVNACGHTFCFWCLHRAMSgFGTSSCPLCRASFR 36
                8**************987636********99888 PP

  == domain 2    score: -1.0 bits;  conditional E-value: 0.14
   TIGR00570  24 nvCghtlCesCvdllfvrGsgsCpeCd 50 
                   Cgh +C +C+  l      +Cp C 
  MMETSP1137-20121227|6127_1  98 LNCGHLVCGACIPSL-----ETCPACA 119
                 47*********9877.....3566665 PP

  == domain 3    score: -3.6 bits;  conditional E-value: 0.9
   TIGR00570 170 eeekkkkkkdkqalldeLetsd 191
                  e++++ + ++++ll +L++ +
  MMETSP1137-20121227|6127_1 257 AEHRMRERPQQKDLLHRLKEMH 278
                 5677888888888888887665 PP

>> TIGR00678  holB: DNA polymerase III, delta' subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.1      0.25   3.4e+02     128     167 ..     120     139 ..     111     158 .. 0.54
   2 ?   10.7   0.3   4.5e-05     0.061      21      75 ..     209     263 ..     201     296 .. 0.84

  Alignments for each domain:
  == domain 1    score: -1.5 bits;  conditional E-value: 0.25
   TIGR00678 128 lflLisespekllpTirSRcqrlslqplseeelaevleeq 167
                  +l ++++p++ll+                    ++le++
  MMETSP1137-20121227|6127_1 120 AALVCVPKPAHLLA--------------------AILERE 139
                 44444444444444....................444444 PP

  == domain 2    score: 10.7 bits;  conditional E-value: 4.5e-05
   TIGR00678  21 GpeGvGkealaealakallCekeeeeeacgeckscrrieagnHPDllvlepegqk 75 
                 G +G+G   ++ +  + l C ++ + + c +c++c+ri++g +  +++ e ++ +
  MMETSP1137-20121227|6127_1 209 GCDGCGVYPVVGRCFRCLDCPEQIGYDLCAACHACNRITSGRFGQVHTAEHRMRE 263
                 6688999999999999999**999**********************999887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (301 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       126  (0.0307167); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.26u 0.14s 00:00:00.40 Elapsed: 00:00:00.47
# Mc/sec: 845.29
//
Query:       MMETSP1137-20121227|6128_1  [L=429]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (429 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        43  (0.0104827); expected 82.0 (0.02)
Passed bias filter:                       35  (0.00853242); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.17s 00:00:00.46 Elapsed: 00:00:00.41
# Mc/sec: 1381.06
//
Query:       MMETSP1137-20121227|6129_1  [L=220]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00067   15.6   0.0    0.00087   15.3   0.0    1.1  1  TIGR00870 trp: transient-receptor-potential calcium channel protein


Domain annotation for each model (and alignments):
>> TIGR00870  trp: transient-receptor-potential calcium channel protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   2.1e-07   0.00087     130     164 ..      66     101 ..      27     110 .. 0.86

  Alignments for each domain:
  == domain 1    score: 15.3 bits;  conditional E-value: 2.1e-07
   TIGR00870 130 kgitalilAihkqnyeivklLlekgasve.arakgd 164
                 +++t l+ A+ + n   vklL++ ga+v+ + a+g+
  MMETSP1137-20121227|6129_1  66 NDQTILHTAALNGNGRFVKLLVAYGANVNaVDANGQ 101
                 79***************************9999997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (220 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       102  (0.0248659); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.21u 0.13s 00:00:00.34 Elapsed: 00:00:00.34
# Mc/sec: 854.05
//
Query:       MMETSP1137-20121227|6130_1  [L=259]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (259 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       184  (0.0448562); expected 82.0 (0.02)
Passed bias filter:                      123  (0.0299854); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.15s 00:00:00.38 Elapsed: 00:00:00.34
# Mc/sec: 1005.45
//
Query:       MMETSP1137-20121227|6131_1  [L=510]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.078    8.8   0.1       0.13    8.1   0.1    1.2  1  TIGR02956 TMAO_torS: TMAO reductase sytem sensor TorS
        3.3    3.9  10.5        5.5    3.2   7.3    1.2  1  TIGR03287 methan_mark_16: putative methanogenesis marker 16 metalloprotein


Domain annotation for each model (and alignments):
>> TIGR02956  TMAO_torS: TMAO reductase sytem sensor TorS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   0.1   6.1e-05      0.13     318     352 ..      68     102 ..      60     105 .. 0.91

  Alignments for each domain:
  == domain 1    score: 8.1 bits;  conditional E-value: 6.1e-05
   TIGR02956 318 avsklsktlsvaqlvllilgllglvilvfilwrvv 352
                 a+s++    +va  vll lgll+lv l ++ wr v
  MMETSP1137-20121227|6131_1  68 AISDVARGCEVAAAVLLLLGLLALVYLKYVRWRAV 102
                 7889999999***********************98 PP

>> TIGR03287  methan_mark_16: putative methanogenesis marker 16 metalloprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   7.3    0.0027       5.5     297     338 ..     370     411 ..     358     419 .. 0.86

  Alignments for each domain:
  == domain 1    score: 3.2 bits;  conditional E-value: 0.0027
   TIGR03287 297 vkynperClnCkvClveekCPveaikkdkeldtedCfgCGvC 338
                 v  ++ rC +C++C+ ++kC  +a kk  e  +++C +   C
  MMETSP1137-20121227|6131_1 370 VFQYKSRCRKCDNCKHRRKCDKRANKKTCEDCKTKCEHAEXC 411
                 456789********************9999999999888777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (510 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       164  (0.0399805); expected 82.0 (0.02)
Passed bias filter:                       99  (0.0241346); expected 82.0 (0.02)
Passed Vit filter:                        26  (0.00633837); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.16s 00:00:00.56 Elapsed: 00:00:00.65
# Mc/sec: 1035.61
//
Query:       MMETSP1137-20121227|6132_1  [L=254]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (254 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       102  (0.0248659); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.15s 00:00:00.36 Elapsed: 00:00:00.71
# Mc/sec: 472.19
//
Query:       MMETSP1137-20121227|6133_1  [L=129]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (129 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        85  (0.0207216); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.16s 00:00:00.32 Elapsed: 00:00:00.41
# Mc/sec: 415.28
//
Query:       MMETSP1137-20121227|6134_1  [L=1078]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1078 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       105  (0.0255973); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.62u 0.13s 00:00:00.75 Elapsed: 00:00:01.05
# Mc/sec: 1355.09
//
Query:       MMETSP1137-20121227|6135_1  [L=106]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (106 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        47  (0.0114578); expected 82.0 (0.02)
Passed bias filter:                       44  (0.0107265); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.16s 00:00:00.31 Elapsed: 00:00:00.31
# Mc/sec: 451.32
//
Query:       MMETSP1137-20121227|6136_1  [L=141]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (141 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       148  (0.03608); expected 82.0 (0.02)
Passed bias filter:                      117  (0.0285227); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.12s 00:00:00.31 Elapsed: 00:00:00.34
# Mc/sec: 547.37
//
Query:       MMETSP1137-20121227|6137_1  [L=182]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (182 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        45  (0.0109703); expected 82.0 (0.02)
Passed bias filter:                       42  (0.0102389); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.14s 00:00:00.31 Elapsed: 00:00:00.31
# Mc/sec: 774.90
//
Query:       MMETSP1137-20121227|6138_1  [L=71]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (71 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        40  (0.00975134); expected 82.0 (0.02)
Passed bias filter:                       36  (0.00877621); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.17s 00:00:00.29 Elapsed: 00:00:00.30
# Mc/sec: 312.37
//
Query:       MMETSP1137-20121227|6139_1  [L=287]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (287 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        70  (0.0170648); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.16s 00:00:00.40 Elapsed: 00:00:00.38
# Mc/sec: 996.87
//
Query:       MMETSP1137-20121227|6141_1  [L=179]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (179 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        70  (0.0170648); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.10s 00:00:00.28 Elapsed: 00:00:00.77
# Mc/sec: 306.83
//
Query:       MMETSP1137-20121227|6142_1  [L=561]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        3.5    2.9   7.5          5    2.4   5.2    1.1  1  TIGR00927 2A1904: K+-dependent Na+/Ca+ exchanger


Domain annotation for each model (and alignments):
>> TIGR00927  2A1904: K+-dependent Na+/Ca+ exchanger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   5.2    0.0012         5     962     999 ..     430     468 ..     383     479 .. 0.50

  Alignments for each domain:
  == domain 1    score: 2.4 bits;  conditional E-value: 0.0012
   TIGR00927 962 ekGvdgeggsdGGdseeeeeeeeeeeeeeee.eeeeeee 999
                  +  d+ ggs GG  ++e++  e e +  +e e+e e+e
  MMETSP1137-20121227|6142_1 430 ADDRDDHGGSGGGGDDDEDDGGESESDSGDEyEHETEQE 468
                 222334444433333333333332222222202222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (561 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        89  (0.0216967); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.17s 00:00:00.55 Elapsed: 00:00:00.50
# Mc/sec: 1480.92
//
Query:       MMETSP1137-20121227|6143_1  [L=414]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (414 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       105  (0.0255973); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.14s 00:00:00.44 Elapsed: 00:00:00.44
# Mc/sec: 1241.90
//
Query:       MMETSP1137-20121227|6144_1  [L=280]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (280 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        57  (0.0138957); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.16s 00:00:00.38 Elapsed: 00:00:00.49
# Mc/sec: 754.22
//
Query:       MMETSP1137-20121227|6145_1  [L=380]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.085   10.4   1.7        2.6    5.7   0.0    2.4  2  TIGR02098 MJ0042_CXXC: MJ0042 family finger-like domain


Domain annotation for each model (and alignments):
>> TIGR02098  MJ0042_CXXC: MJ0042 family finger-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   0.0   0.00062       2.6      24      33 ..      57      66 ..      55      70 .. 0.83
   2 ?    3.5   0.3    0.0031        13       2      16 ..      97     111 ..      96     113 .. 0.86

  Alignments for each domain:
  == domain 1    score: 5.7 bits;  conditional E-value: 0.00062
   TIGR02098 24 gkVRCgkCgh 33
                + VRC +Cg 
  MMETSP1137-20121227|6145_1 57 MSVRCQTCGE 66
                67******97 PP

  == domain 2    score: 3.5 bits;  conditional E-value: 0.0031
   TIGR02098   2 riqCPnCktsyrVdd 16 
                 +++C  C++ + ++ 
  MMETSP1137-20121227|6145_1  97 YFKCITCSAEFTIKT 111
                 799********9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (380 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       153  (0.0372989); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.27u 0.17s 00:00:00.44 Elapsed: 00:00:00.37
# Mc/sec: 1355.56
//
Query:       MMETSP1137-20121227|6146_1  [L=656]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (656 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       116  (0.0282789); expected 82.0 (0.02)
Passed bias filter:                      102  (0.0248659); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.14s 00:00:00.59 Elapsed: 00:00:01.08
# Mc/sec: 801.71
//
Query:       MMETSP1137-20121227|6147_1  [L=497]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (497 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        39  (0.00950756); expected 82.0 (0.02)
Passed bias filter:                       35  (0.00853242); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.15s 00:00:00.46 Elapsed: 00:00:00.42
# Mc/sec: 1561.87
//
Query:       MMETSP1137-20121227|6148_1  [L=293]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.15    8.5   5.8       0.21    8.0   4.0    1.1  1  TIGR00990 3a0801s09: mitochondrial precursor proteins import receptor


Domain annotation for each model (and alignments):
>> TIGR00990  3a0801s09: mitochondrial precursor proteins import receptor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   4.0   5.2e-05      0.21      64     119 ..     220     275 ..     212     279 .. 0.89

  Alignments for each domain:
  == domain 1    score: 8.0 bits;  conditional E-value: 5.2e-05
   TIGR00990  64 eskpklskkerrkrkdaekeaekkaeekkstapkaaavesadelpeidessvvnls 119
                 ++k   +  er   k++ek+a k++e+++s++ + a++e  d+ ++ d ++  +l 
  MMETSP1137-20121227|6148_1 220 GEKAASEHSERAASKHSEKAASKHSEKAASKQVERATIEESDKRSDTDVDEHTRLK 275
                 556667889*************************************9999888775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (293 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       163  (0.0397367); expected 82.0 (0.02)
Passed bias filter:                      119  (0.0290102); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.27u 0.18s 00:00:00.45 Elapsed: 00:00:00.28
# Mc/sec: 1333.55
//
Query:       MMETSP1137-20121227|6149_1  [L=454]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0032   14.7   0.0     0.0057   13.9   0.0    1.3  1  TIGR02852 spore_dpaB: dipicolinic acid synthetase, B subunit


Domain annotation for each model (and alignments):
>> TIGR02852  spore_dpaB: dipicolinic acid synthetase, B subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.0   1.4e-06    0.0057      18      76 ..     195     254 ..     186     257 .. 0.87

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 1.4e-06
   TIGR02852  18 lpkleklveegaevvpivsetvkttetrfGegadwikkieeitgkkaiktiveae.PlGP 76 
                 ++ +e ++  g + + ++ +t+ tt+ rf ++ d ik++e  t +k+   +  a+ P GP
  MMETSP1137-20121227|6149_1 195 VGDVESMIMLGKDRKKVARYTILTTNHRFSKNMDEIKRVEAATKNKVRAGLNAAKrPQGP 254
                 678999*************************************99988888766436666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (454 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        86  (0.0209654); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.31u 0.15s 00:00:00.46 Elapsed: 00:00:00.39
# Mc/sec: 1536.49
//
Query:       MMETSP1137-20121227|6150_1  [L=102]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (102 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        48  (0.0117016); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.14s 00:00:00.28 Elapsed: 00:00:00.31
# Mc/sec: 434.29
//
Query:       MMETSP1137-20121227|6151_1  [L=344]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (344 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        70  (0.0170648); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.14s 00:00:00.38 Elapsed: 00:00:00.38
# Mc/sec: 1194.85
//
Query:       MMETSP1137-20121227|6152_1  [L=46]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (46 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       242  (0.0589956); expected 82.0 (0.02)
Passed bias filter:                      157  (0.038274); expected 82.0 (0.02)
Passed Vit filter:                        18  (0.0043881); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.20s 00:00:00.34 Elapsed: 00:00:00.47
# Mc/sec: 129.18
//
Query:       MMETSP1137-20121227|6153_1  [L=270]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (270 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        26  (0.00633837); expected 82.0 (0.02)
Passed bias filter:                       26  (0.00633837); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.14s 00:00:00.34 Elapsed: 00:00:00.94
# Mc/sec: 379.12
//
Query:       MMETSP1137-20121227|6154_1  [L=390]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (390 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       111  (0.02706); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.14s 00:00:00.40 Elapsed: 00:00:00.42
# Mc/sec: 1225.61
//
Query:       MMETSP1137-20121227|6155_1  [L=296]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      2e-16   57.6   0.0    3.6e-16   56.7   0.0    1.5  1  TIGR02160 PA_CoA_Oxy5: phenylacetate-CoA oxygenase/reductase, PaaK subunit
    4.2e-14   50.1   0.0    5.7e-14   49.7   0.0    1.1  1  TIGR01941 nqrF: NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit
      1e-10   39.0   0.0    1.4e-10   38.6   0.0    1.2  1  TIGR02911 sulfite_red_B: sulfite reductase, subunit B
  ------ inclusion threshold ------
       0.04   10.6   0.0      0.051   10.3   0.0    1.1  1  TIGR03224 benzo_boxA: benzoyl-CoA oxygenase/reductase, BoxA protein


Domain annotation for each model (and alignments):
>> TIGR02160  PA_CoA_Oxy5: phenylacetate-CoA oxygenase/reductase, PaaK subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.7   0.0   3.5e-19   3.6e-16      73     232 ..     124     289 ..      84     296 .] 0.77

  Alignments for each domain:
  == domain 1    score: 56.7 bits;  conditional E-value: 3.5e-19
   TIGR02160  73 eGGlfstwaneeiraGdtlevmaP........qGrftskldaerakhyvavaaGsGitPilaivktvlaa.epkstftlvyanrrsasvmfaeeladlkdkypqrfallhvlsreereaellsGrldgeklkalldslievdevdeaflcGPaalvd.daedalkalGvd 232
                 +GG +s+++ + +++Gd++ +  P        +G+f+   +  +  ++ ++a G+GitP+l +++++l++  +k+t+ l+yan+++++++ ++ l+ l +k+p+r++l   l r         G + +  +++   +l +      + +cGP  +++  +e++l+ lG +
  MMETSP1137-20121227|6155_1 124 DGGKMSQYL-DTLKVGDAITISGPwgmneylgHGKFKIGSKERSCTKLGMMAGGTGITPMLQVIAAILKDpTDKTTISLLYANQTESDILVRDMLEALAQKHPTRLKLWYTLDRPGPGWAYSTGFITDSMIAE---HLPPPGPDTLVLMCGPPPMIKfACEANLNKLGYA 289
                 688888886.89********988833332333456666666666899999******************873689*************************************9999888888888887765543...3334444445677888888874567778877764 PP

>> TIGR01941  nqrF: NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.7   0.0   5.5e-17   5.7e-14     203     393 ..      89     288 ..      77     294 .. 0.80

  Alignments for each domain:
  == domain 1    score: 49.7 bits;  conditional E-value: 5.5e-17
   TIGR01941 203 eetvrayslanypeekgiiklnvriatppfanaeippGkmssyifslkpGdkvtvsGpfG........effvkdtda...elvfigGGaGmaplrshildllkrlkskrkisfwyGarskrevfyeedfdeleaendn.fkyhvalsdplpednwtGytgfihnvlyenylkdhdapediefymcGpplm.naaviklledlGv 393
                  e+ r y+ ++  +e g + l +++    + +   + Gkms y+ +lk Gd +t+sGp+G        +f +  +++   +l +++GG+G++p+   i   lk    k  is+ y  +++ +++ ++  + l+++++  +k   +l  p p   w+  tgfi + +  ++l       d++  mcGpp m + a    l++lG 
  MMETSP1137-20121227|6155_1  89 TEIERKYTPTTSDDEIGYVDLVIKVYKGGVVDRFPDGGKMSQYLDTLKVGDAITISGPWGmneylghgKFKIGSKERsctKLGMMAGGTGITPMLQVIAAILKDPTDKTTISLLYANQTESDILVRDMLEALAQKHPTrLKLWYTLDRPGP--GWAYSTGFITDSMIAEHLPP--PGPDTLVLMCGPPPMiKFACEANLNKLGY 288
                 56778899999999999999999999999998777789********************9643222222566666665222466889**********************************************9998852677777777766..6999********99999863..3358999****987614566677777775 PP

>> TIGR02911  sulfite_red_B: sulfite reductase, subunit B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.6   0.0   1.4e-13   1.4e-10      66     214 ..     125     288 ..      99     294 .. 0.77

  Alignments for each domain:
  == domain 1    score: 38.6 bits;  conditional E-value: 1.4e-13
   TIGR02911  66 vgkvtdevfelkegdklflrgpyg.n...g...fdvdnykd..kelvvvaggtgvapvkgvveyfaknskevkeldlivgfktredilfkedlaewkeki....nlvltldeaeeddkykvglvtkyiaelklk.dieevqvivvgppimlkftvkell.kkgl 214
                  gk+++ + +lk+gd + + gp+g n   g   f++ +      +l ++aggtg++p+  v+  + k++ +   ++l+   +t+ dil ++ l+   +k+    +l  tld    +  y +g +t+ +   +l     +  v++ gpp m+kf+ +  l k g 
  MMETSP1137-20121227|6155_1 125 GGKMSQYLDTLKVGDAITISGPWGmNeylGhgkFKIGSKERscTKLGMMAGGTGITPMLQVIAAILKDPTDKTTISLLYANQTESDILVRDMLEALAQKHptrlKLWYTLDRPGPGWAYSTGFITDSMIAEHLPpPGPDTLVLMCGPPPMIKFACEANLnKLGY 288
                 589999999*************99432221112444433221146889******************************************999887776522226778*****************9877666651456788999**********9876614465 PP

>> TIGR03224  benzo_boxA: benzoyl-CoA oxygenase/reductase, BoxA protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0     5e-05     0.051     234     284 ..     125     184 ..      98     211 .. 0.72

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 5e-05
   TIGR03224 234 rgvasnylcdlkkgdkvqvigpfgst.fl......mpnhpes..silmictgtgsapmra 284
                  g  s+yl  lk gd +++ gp+g   +l      +  + +s  ++ m+  gtg +pm  
  MMETSP1137-20121227|6155_1 125 GGKMSQYLDTLKVGDAITISGPWGMNeYLghgkfkIGSKERSctKLGMMAGGTGITPMLQ 184
                 4789********************742441111114444443226789999999999965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (296 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        72  (0.0175524); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.26u 0.17s 00:00:00.43 Elapsed: 00:00:00.45
# Mc/sec: 868.19
//
Query:       MMETSP1137-20121227|6156_1  [L=303]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (303 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        91  (0.0221843); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.13s 00:00:00.38 Elapsed: 00:00:00.71
# Mc/sec: 563.28
//
Query:       MMETSP1137-20121227|6158_1  [L=232]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
          1    4.7  13.8        1.1    4.5   9.6    1.0  1  TIGR00927 2A1904: K+-dependent Na+/Ca+ exchanger


Domain annotation for each model (and alignments):
>> TIGR00927  2A1904: K+-dependent Na+/Ca+ exchanger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   9.6   0.00028       1.1     680     836 ..      14     176 ..       4     226 .. 0.58

  Alignments for each domain:
  == domain 1    score: 4.5 bits;  conditional E-value: 0.00028
   TIGR00927 680 sldplgearls..kdkeeellqeeakltqtkkeeskdeeepaklpevtvtpap.apedkgdqeedpgsqgdvaeaeakgertgeeaeae.teaegekdeesggeaeqegeseek...aeeeseGeieaerkgedegegeieakeaevkGeeeeeeveaeeetea 836
                  ld  +ea  +  +d +e+ + e a  + + ke   + +e    p++ v     +  +      d g q+ v +++a +++ g +++++    + +kd++++++++++g + ++    ++   G++++     +++ +e  +  + +   ++++ev + e +e 
  MMETSP1137-20121227|6158_1  14 QLDARREAAAAakRDAQEKEQAERAARAVAVKERIAKGDEAWLAPALMVKIGDrTAATATKTGSDEGIQDYVVNPKASAHKHGCKHKEKhKHKDKHKDKHKEKHKDKHGSTRNVhnlRKQTAAGDLNSGSDSSSDDVAESASSGS-HVATRQQSEVAKVETGER 176
                 5777777765411344444444433344444555555555555666666544313333445567889999998888888877765544413445555556666666666655541115677889999986666665555555444.434434444444433332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (232 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       305  (0.074354); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.29u 0.17s 00:00:00.46 Elapsed: 00:00:00.53
# Mc/sec: 577.76
//
Query:       MMETSP1137-20121227|6159_1  [L=281]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (281 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        71  (0.0173086); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.15s 00:00:00.38 Elapsed: 00:00:00.33
# Mc/sec: 1123.91
//
Query:       MMETSP1137-20121227|6160_1  [L=290]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (290 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       130  (0.0316919); expected 82.0 (0.02)
Passed bias filter:                      112  (0.0273038); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.14s 00:00:00.39 Elapsed: 00:00:00.47
# Mc/sec: 814.40
//
Query:       MMETSP1137-20121227|6161_1  [L=85]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (85 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        35  (0.00853242); expected 82.0 (0.02)
Passed bias filter:                       32  (0.00780107); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.18s 00:00:00.31 Elapsed: 00:00:00.68
# Mc/sec: 164.99
//
Query:       MMETSP1137-20121227|6162_1  [L=68]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (68 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        23  (0.00560702); expected 82.0 (0.02)
Passed bias filter:                       23  (0.00560702); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.37
# Mc/sec: 242.57
//
Query:       MMETSP1137-20121227|6163_1  [L=642]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (642 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       156  (0.0380302); expected 82.0 (0.02)
Passed bias filter:                      131  (0.0319356); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.17s 00:00:00.62 Elapsed: 00:00:00.52
# Mc/sec: 1629.56
//
Query:       MMETSP1137-20121227|6164_1  [L=116]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (116 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        65  (0.0158459); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.27
# Mc/sec: 567.06
//
Query:       MMETSP1137-20121227|6165_1  [L=463]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      8e-87  290.6   0.0    9.8e-87  290.3   0.0    1.0  1  TIGR01130 ER_PDI_fam: protein disulfide isomerases
    3.8e-50  166.4   0.0    7.5e-24   81.9   0.0    3.5  4  TIGR01126 pdi_dom: protein disulfide-isomerase domain
    1.1e-17   61.9   0.0    1.8e-07   29.1   0.0    3.4  4  TIGR01068 thioredoxin: thioredoxin
    8.6e-08   29.0   0.0    3.1e-05   20.6   0.0    2.1  2  TIGR00424 APS_reduc: 5'-adenylylsulfate reductase, thioredoxin-independent
    0.00038   18.0   0.0     0.0086   13.6   0.0    2.3  2  TIGR02738 TrbB: type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB
  ------ inclusion threshold ------
      0.018   12.5   0.0       0.53    7.7   0.0    2.2  2  TIGR00385 dsbE: periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily


Domain annotation for each model (and alignments):
>> TIGR01130  ER_PDI_fam: protein disulfide isomerases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  290.3   0.0   1.4e-89   9.8e-87       6     450 ..       3     434 ..       1     455 [. 0.90

  Alignments for each domain:
  == domain 1    score: 290.3 bits;  conditional E-value: 1.4e-89
   TIGR01130   6 ltkenfddlikenelvLveF.YAPWCGHCksLaPeYekAAeelkkkspkvklakvDateekelaqkygvsGyPtLkifrngesssdYnGpReaegivkylkkqsgPaskeletvedlekllekkevvvvgvfkdldselvetflevaeklrdkfkavasssdeaalkkleakkdevvlvkkkkeeekeekveeeletdvealekfvkkeslplvgeftketaakifeskplkvlllnveeskkkseellekflevakkfkgkkvkfavadeeefgkeleelglkaek...apavvilsleeskkyaleqeefssealkefvkdfldgklkpvlkSepiped.deepVkvvVgknfdeivldetKdVLvefYApWCGHCkkLapiYeelaekykkeedvviakldataNdvpefevegFPTilfvpagkksepvkyegdRtledlvkFikk 450
                 l++++++++  e+    v F YAPWCGH k+L Pe+e+A + ++++s  +  a+ D+t+ +  a+  +v+GyP+L + r+g  + +Y+G R+a+ iv + +++ +P   + +++++l+  l+ ++v  v        e  +                 s+ +   ++ ++a + ++v++k+ +   + ++++++ + + +a+e+fv++es+p v+e++  +++  f +++  ++l + + +       +e++  +ak+ +g +  fa+ d+ + ++++++++++ +    +p+ +++  ++  kya++  e++ + l++fv+++++g  +p+l+S p p+   + p++ +Vg++++e v+++ KdVLv +Y p CGHC+kL p+Ye la+k +++++++ia++da aNdvp  +  g+PTi+f+++g++ + v+y+g+R+l+d+++F++ 
  MMETSP1137-20121227|6165_1   3 LSDDTYKSFAAEHASGFVLFvYAPWCGHSKALRPEFEAASRLMSSSS--LPFASLDGTAAEATATALDVKGYPSLLFVRQGV-PDEYDGDRTAARIVAWAQRKLNPELPTFTSEAALQGWLNVSAVLFVXXLX---XEXXAVXXMXXXXXXXXLPCXLSTXS--STSLSDARPPSLVVFKTFDD--RAAVLADSDKLNRKAMERFVRVESMPWVTELKVGKEEMVFGRDVDLTVLHFHRGRA-----PTEELAAAAKQLRG-TAVFATVDAPKHDEVTSYFDVEPNGvlpTPVTMVFAPDTYDKYAYTG-EITGDGLAAFVRSVKAGSERPHLRSAPAPARnGDAPLVELVGSTYEETVFESGKDVLVLLYSPDCGHCRKLLPVYEALAQKVADDSELLIAQMDAIANDVPGLQPDGYPTIVFYTKGNR-RGVEYDGSRDLHDMIQFMSD 434
                 789999999999999999999****************9999999888..********************************5.9*******************************999998876666665555...45555555555555566665556554..55566667778999998887..889999999999**********************9*******98888888877766.....6789999*******.777*******************99988889999************98.9*****************************97899***********************************************************************************9.7****************985 PP

>> TIGR01126  pdi_dom: protein disulfide-isomerase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.1   0.0   5.1e-23   3.5e-20       2     104 ..       4     102 ..       3     103 .. 0.89
   2 ?   -2.7   0.0       2.4   1.6e+03      51      83 ..     182     214 ..     174     219 .. 0.68
   3 !   10.3   0.0   0.00021      0.14      37     103 ..     237     308 ..     231     310 .. 0.77
   4 !   81.9   0.0   1.1e-26   7.5e-24       2     103 ..     336     434 ..     335     436 .. 0.94

  Alignments for each domain:
  == domain 1    score: 70.1 bits;  conditional E-value: 5.1e-23
   TIGR01126   2 vaenfdelvldenkdvlvefyaPWCGhCkklaPeyeklakelkkeeekvkiakvdataekelaskfkvsgfPtlkffkkgkkepvdyeGeReaeelvefveek 104
                 ++++++++ +++ + +++  yaPWCGh k+l Pe+e +++ ++++  ++  a +d ta +++a+ ++v+g+P l f+++g   p +y+G+R+a+++v++ ++k
  MMETSP1137-20121227|6165_1   4 SDDTYKSFAAEHASGFVLFVYAPWCGHSKALRPEFEAASRLMSSS--SLPFASLDGTAAEATATALDVKGYPSLLFVRQGV--PDEYDGDRTAARIVAWAQRK 102
                 57788888887666677777****************988877764..6********************************9..9***************9875 PP

  == domain 2    score: -2.7 bits;  conditional E-value: 2.4
   TIGR01126  51 kiakvdataekelaskfkvsgfPtlkffkkgkk 83 
                 ++a+ d  + k++ + + v++ P ++ +k gk+
  MMETSP1137-20121227|6165_1 182 VLADSDKLNRKAMERFVRVESMPWVTELKVGKE 214
                 556666556666666678999998888887776 PP

  == domain 3    score: 10.3 bits;  conditional E-value: 0.00021
   TIGR01126  37 eklakelkkeeekvkiakvdataekelaskfkvsg...f..PtlkffkkgkkepvdyeGeReaeelvefvee 103
                 e+la++ k+ + + + a vda +++e++s f+v+       P  ++f  ++ +++ y+Ge + + l++fv++
  MMETSP1137-20121227|6165_1 237 EELAAAAKQLRGTAVFATVDAPKHDEVTSYFDVEPngvLptPVTMVFAPDTYDKYAYTGEITGDGLAAFVRS 308
                 4555555555567899***************9984223322557788888889***************9985 PP

  == domain 4    score: 81.9 bits;  conditional E-value: 1.1e-26
   TIGR01126   2 vaenfdelvldenkdvlvefyaPWCGhCkklaPeyeklakelkkeeekvkiakvdataekelaskfkvsgfPtlkffkkgkkepvdyeGeReaeelvefvee 103
                 v ++++e+v ++ kdvlv  y+P CGhC+kl P+ye la+++++++ ++ ia++da a+++ +  ++ +g+Pt+ f++kg+++ v+y+G+R+++++++f+++
  MMETSP1137-20121227|6165_1 336 VGSTYEETVFESGKDVLVLLYSPDCGHCRKLLPVYEALAQKVADDS-ELLIAQMDAIANDVPG--LQPDGYPTIVFYTKGNRRGVEYDGSRDLHDMIQFMSD 434
                 67899**************************************876.7***********9997..7889******************************986 PP

>> TIGR01068  thioredoxin: thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.1   0.0   2.6e-10   1.8e-07       5      80 ..       7      83 ..       3     103 .. 0.80
   2 ?   -2.1   0.0       1.4   9.5e+02      62      80 ..     196     214 ..     179     219 .. 0.73
   3 ?   -0.3   0.0      0.38   2.6e+02      36      67 ..     239     270 ..     233     297 .. 0.81
   4 !   27.9   0.0   6.3e-10   4.3e-07       5      81 ..     339     415 ..     336     435 .. 0.89

  Alignments for each domain:
  == domain 1    score: 29.1 bits;  conditional E-value: 2.6e-10
   TIGR01068  5 nfeetvassdklvlvDfwAeWCgpCkmlaPvleelakele.ekvkvvKlnvdeeqeiaakygirsiPtlllfkngke 80
                ++++  a++    ++  +A+WCg  k+l P +e +++ ++ +++ ++ l+  + +++a++ +++  P ll++++g  
  MMETSP1137-20121227|6165_1  7 TYKSFAAEHASGFVLFVYAPWCGHSKALRPEFEAASRLMSsSSLPFASLDGTAAEATATALDVKGYPSLLFVRQGVP 83
                55566666665667778*****************99876516799****************************9965 PP

  == domain 2    score: -2.1 bits;  conditional E-value: 1.4
   TIGR01068  62 akygirsiPtlllfkngke 80 
                 + + ++s+P +  +k gke
  MMETSP1137-20121227|6165_1 196 RFVRVESMPWVTELKVGKE 214
                 4468999999999999987 PP

  == domain 3    score: -0.3 bits;  conditional E-value: 0.38
   TIGR01068  36 leelakeleekvkvvKlnvdeeqeiaakygir 67 
                 l+ +ak+l++++ ++ ++  +++e+++ ++++
  MMETSP1137-20121227|6165_1 239 LAAAAKQLRGTAVFATVDAPKHDEVTSYFDVE 270
                 67789999999*************99999986 PP

  == domain 4    score: 27.9 bits;  conditional E-value: 6.3e-10
   TIGR01068   5 nfeetvassdklvlvDfwAeWCgpCkmlaPvleelakeleekvkvvKlnvdeeqeiaakygirsiPtlllfkngkev 81 
                 ++eetv +s k vlv  + + Cg C+ l Pv e la++++++ +++  ++d+  +     +    Pt++++ +g++ 
  MMETSP1137-20121227|6165_1 339 TYEETVFESGKDVLVLLYSPDCGHCRKLLPVYEALAQKVADDSELLIAQMDAIANDVPGLQPDGYPTIVFYTKGNRR 415
                 6899999999*****************************************999999999*************9875 PP

>> TIGR00424  APS_reduc: 5'-adenylylsulfate reductase, thioredoxin-independent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.3   0.0   0.00095      0.65     374     436 ..      18      78 ..      11      88 .. 0.76
   2 !   20.6   0.0   4.6e-08   3.1e-05     375     464 .]     351     436 ..     341     436 .. 0.84

  Alignments for each domain:
  == domain 1    score: 6.3 bits;  conditional E-value: 0.00095
   TIGR00424 374 awlvvlyapwcpfcqameasyvelaeklagsgvkvakfradgdqkefakqelqlgsfptillf 436
                  +++ +yapwc   +a+   +   a++l  s   +     dg   e +   l+++ +p++l+ 
  MMETSP1137-20121227|6165_1  18 GFVLFVYAPWCGHSKALRPEFE-AASRLMSSS-SLPFASLDGTAAEATATALDVKGYPSLLFV 78 
                 578889***********99885.566665443.334445699999999999999999998876 PP

  == domain 2    score: 20.6 bits;  conditional E-value: 4.6e-08
   TIGR00424 375 wlvvlyapwcpfcqameasyvelaeklagsgvkvakfradgdqkefakqelqlgsfptillfpkrssraikypsekrdvdslmsfvnllr 464
                  lv+ly+p c  c+ +   y  la+k+a + +    + a+ d  +     lq + +pti+++ k   r + y    rd++ ++ f+  +r
  MMETSP1137-20121227|6165_1 351 VLVLLYSPDCGHCRKLLPVYEALAQKVADDSEL---LIAQMDAIANDVPGLQPDGYPTIVFYTKGNRRGVEYDG-SRDLHDMIQFMSDVR 436
                 699*************************87654...33444555555679**********************86.699999999998776 PP

>> TIGR02738  TrbB: type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.0     0.061        41      53      95 ..      19      62 ..       3      71 .. 0.78
   2 !   13.6   0.0   1.3e-05    0.0086      53      79 ..     351     377 ..     319     383 .. 0.89

  Alignments for each domain:
  == domain 1    score: 1.6 bits;  conditional E-value: 0.061
   TIGR02738 53 klvlfyqstCpyChqfapvLkqlsqqtglevlay.slDgkglae 95
                 ++++y   C + +   p + + s  +  + l++ slDg   ++
  MMETSP1137-20121227|6165_1 19 FVLFVYAPWCGHSKALRPEFEAASRLMSSSSLPFaSLDGTAAEA 62
                355668999****************9999999987899987665 PP

  == domain 2    score: 13.6 bits;  conditional E-value: 1.3e-05
   TIGR02738  53 klvlfyqstCpyChqfapvLkqlsqqt 79 
                  lvl+y+ +C +C++  pv  +l+q++
  MMETSP1137-20121227|6165_1 351 VLVLLYSPDCGHCRKLLPVYEALAQKV 377
                 69**********************986 PP

>> TIGR00385  dsbE: periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.0     0.033        22      60      84 ..      13      37 ..       3      72 .. 0.79
   2 ?    7.7   0.0   0.00078      0.53      52      91 ..     337     376 ..     305     389 .. 0.82

  Alignments for each domain:
  == domain 1    score: 2.4 bits;  conditional E-value: 0.033
   TIGR00385 60 lkkgklvLlnvwasWCptCraehpl 84
                ++++  ++l v+a WC+  +a  p 
  MMETSP1137-20121227|6165_1 13 AEHASGFVLFVYAPWCGHSKALRPE 37
                5556678899*******99886554 PP

  == domain 2    score: 7.7 bits;  conditional E-value: 0.00078
   TIGR00385  52 vqlltaevlkkgklvLlnvwasWCptCraehplLkelake 91 
                   ++++ v++ gk vL+ +++  C+ Cr+  p+ + la++
  MMETSP1137-20121227|6165_1 337 GSTYEETVFESGKDVLVLLYSPDCGHCRKLLPVYEALAQK 376
                 35788899*********************99999999976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (463 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        66  (0.0160897); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.36u 0.15s 00:00:00.51 Elapsed: 00:00:00.50
# Mc/sec: 1222.22
//
Query:       MMETSP1137-20121227|6167_1  [L=171]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (171 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        47  (0.0114578); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.17s 00:00:00.35 Elapsed: 00:00:01.19
# Mc/sec: 189.67
//
Query:       MMETSP1137-20121227|6169_1  [L=622]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (622 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       197  (0.0480254); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.14s 00:00:00.59 Elapsed: 00:00:00.59
# Mc/sec: 1391.48
//
Query:       MMETSP1137-20121227|6170_1  [L=394]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (394 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        91  (0.0221843); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.16s 00:00:00.46 Elapsed: 00:00:00.39
# Mc/sec: 1333.43
//
Query:       MMETSP1137-20121227|6171_1  [L=402]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.012   12.9   0.1      0.046   11.1   0.1    2.0  1  TIGR00778 ahpD_dom: alkylhydroperoxidase AhpD family core domain


Domain annotation for each model (and alignments):
>> TIGR00778  ahpD_dom: alkylhydroperoxidase AhpD family core domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.1   1.1e-05     0.046      22      44 ..      23      45 ..      20      51 .. 0.86

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 1.1e-05
   TIGR00778 22 gyCldaHtkaArkaGvtaeelae 44
                ++C+d H ++A ++G+ +  l+e
  MMETSP1137-20121227|6171_1 23 AFCVDHHQQQAQAFGELPSFLEE 45
                69**************9887776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (402 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       106  (0.0258411); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.17s 00:00:00.50 Elapsed: 00:00:00.71
# Mc/sec: 747.32
//
Query:       MMETSP1137-20121227|6172_1  [L=355]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (355 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        76  (0.0185275); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.18s 00:00:00.44 Elapsed: 00:00:00.37
# Mc/sec: 1266.38
//
Query:       MMETSP1137-20121227|6173_1  [L=1064]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.2e-13   46.1   0.0    4.1e-12   42.9   0.0    2.2  2  TIGR02956 TMAO_torS: TMAO reductase sytem sensor TorS
      3e-05   21.0   0.2      0.001   16.0   0.0    2.1  2  TIGR02966 phoR_proteo: phosphate regulon sensor kinase PhoR


Domain annotation for each model (and alignments):
>> TIGR02956  TMAO_torS: TMAO reductase sytem sensor TorS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   1.6     0.089   1.8e+02     423     480 ..     293     354 ..     280     366 .. 0.69
   2 !   42.9   0.0     2e-15   4.1e-12     512     692 ..     478     674 ..     467     685 .. 0.83

  Alignments for each domain:
  == domain 1    score: -2.3 bits;  conditional E-value: 0.089
   TIGR02956 423 esLeelvaqrT....qeLketnerLneEvlnHakAraeAeeAnrAKSaFLAtmSHEiRTPln 480
                 ++L  l++qr     qe ++t +  ++E  + +  r   e+  + + ++L +m H+  TP+ 
  MMETSP1137-20121227|6173_1 293 KNLHTLLQQREqahrQEEAATRRAAESELRAREAERIAHEQDVQRRNKYLGAMCHDFGTPVA 354
                 4455555554411114555565666777778888888889999999*************986 PP

  == domain 2    score: 42.9 bits;  conditional E-value: 2e-15
   TIGR02956 512 LldiL.nDiLDySkiEaG.hlsiserafdlskLledvlhlmesraqekgiqLsleidedlpevlqgDlsrirQvliNlvgNaiKFTdrGsvvlrvslndds.......llfeVeDtGvGiaeeeq.etlFka......ftqaegrkksgGTGLGLAiskrlveamdgelsveSelgkGScFafelplergkkaeksa 692
                 Lld+     L y k+EaG ++  s + f++ +L+e+v  + +   ++  ++ + +i   +p++ + D s +  vliNl +Na+K T+ Gsv+l+v  ++          + + +  G G  + ++ + lF+a      +++ + + k +   LGL  sk+lv +++ge++   ++  G  F +e+p+e++  ++  a
  MMETSP1137-20121227|6173_1 478 LLDVTrHKALAYAKLEAGrEMVPSLKVFNVAELIEKVASVARDTGKSDRVEVRHHIAPGTPATAKSDASWLFMVLINLASNAMKHTQIGSVTLSVIPAGRGrlrderhPRRKRQPPGGGARHGQRpARLFRAlsfpgiYVRKHAQLKRREHWLGLYHSKQLVTILNGEIGYVPNEPTGCVFFIEVPIEEAPRNDANA 674
                 55554135799*******8899999*********************************************************************9755544444444666677778888776544389**9855444455666777789999************************************997766555 PP

>> TIGR02966  phoR_proteo: phosphate regulon sensor kinase PhoR
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    2.7   0.0    0.0053        11      99     142 ..     321     366 ..     277     378 .. 0.62
   2 !   16.0   0.0   4.9e-07     0.001     172     248 ..     487     566 ..     465     576 .. 0.83

  Alignments for each domain:
  == domain 1    score: 2.7 bits;  conditional E-value: 0.0053
   TIGR02966  99 lvarDvtklkrle..qmRrdFvanvsHELrtPLtvlkGyletleee 142
                 l ar   ++ + +  q R++++  + H+  tP++vlk  l +l++ 
  MMETSP1137-20121227|6173_1 321 LRAREAERIAHEQdvQRRNKYLGAMCHDFGTPVAVLKMLLSLLRAA 366
                 44455544443331145889****************9999888765 PP

  == domain 2    score: 16.0 bits;  conditional E-value: 4.9e-07
   TIGR02966 172 ltLsrlEsaakeke.eekvdvaelleelkkeaealseekehqielev..daavkvkgdeeeLrsalsNLveNAikytpeg 248
                 l+ ++lE+ ++     + ++vael+e++++ a+ + ++ +++++ ++   + ++ k+d + L  +l NL +NA+k+t+ g
  MMETSP1137-20121227|6173_1 487 LAYAKLEAGREMVPsLKVFNVAELIEKVASVARDTGKSDRVEVRHHIapGTPATAKSDASWLFMVLINLASNAMKHTQIG 566
                 66789999876655056679***************99999***999943455667778889****************976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1064 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       245  (0.059727); expected 82.0 (0.02)
Passed bias filter:                      116  (0.0282789); expected 82.0 (0.02)
Passed Vit filter:                        21  (0.00511945); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.81u 0.16s 00:00:00.97 Elapsed: 00:00:00.76
# Mc/sec: 1847.85
//
Query:       MMETSP1137-20121227|6174_1  [L=119]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (119 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       115  (0.0280351); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.17s 00:00:00.33 Elapsed: 00:00:00.50
# Mc/sec: 314.13
//
Query:       MMETSP1137-20121227|6175_1  [L=1357]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.075    9.7   0.0       0.12    9.1   0.0    1.2  1  TIGR03449 mycothiol_MshA: UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase


Domain annotation for each model (and alignments):
>> TIGR03449  mycothiol_MshA: UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   0.0   2.9e-05      0.12      31      93 ..     353     417 ..     350     446 .. 0.76

  Alignments for each domain:
  == domain 1    score: 9.1 bits;  conditional E-value: 2.9e-05
   TIGR03449  31 akelarrgveveiftratssaqgevvevap.gvlvrnvvaGPyegldkedlptqlaaf.tagvlr 93 
                 + e+ ++g  +++  ra +++ +    v++  + v+   aG + + +k++  t+l+ f + ++l+
  MMETSP1137-20121227|6175_1 353 TAEVDENGFPLDVTERAKKAQLRYNFIVEEdCLCVITTSAGNFRNAEKTETRTKLCNFyVVKILN 417
                 56788999999*******9999888777651689***********************93345553 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1357 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        86  (0.0209654); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.77u 0.17s 00:00:00.94 Elapsed: 00:00:00.67
# Mc/sec: 2673.27
//
Query:       MMETSP1137-20121227|6176_1  [L=212]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (212 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       182  (0.0443686); expected 82.0 (0.02)
Passed bias filter:                      124  (0.0302292); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.16s 00:00:00.38 Elapsed: 00:00:00.39
# Mc/sec: 717.48
//
Query:       MMETSP1137-20121227|6177_1  [L=288]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (288 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        16  (0.00390054); expected 82.0 (0.02)
Passed bias filter:                       15  (0.00365675); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.13s 00:00:00.34 Elapsed: 00:00:00.31
# Mc/sec: 1226.22
//
Query:       MMETSP1137-20121227|6178_1  [L=47]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (47 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        23  (0.00560702); expected 82.0 (0.02)
Passed bias filter:                       18  (0.0043881); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.15s 00:00:00.26 Elapsed: 00:00:00.25
# Mc/sec: 248.14
//
Query:       MMETSP1137-20121227|6179_1  [L=555]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        4.2    5.6  10.3       0.19    9.9   1.3    3.0  2  TIGR03142 cytochro_ccmI: cytochrome c-type biogenesis protein CcmI


Domain annotation for each model (and alignments):
>> TIGR03142  cytochro_ccmI: cytochrome c-type biogenesis protein CcmI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   1.3   4.6e-05      0.19      56      86 ..      74     104 ..      59     123 .. 0.84
   2 ?   -1.5   0.7      0.16   6.4e+02      53      71 ..     232     251 ..     203     253 .. 0.74

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 4.6e-05
   TIGR03142  56 lldeaeaeaakaElerrLLadakeaeeeaas 86 
                  ++e+ea++ak+E+++rLL++ +++ee+ ++
  MMETSP1137-20121227|6179_1  74 RMKEEEAARAKEEMRKRLLKERQAQEEKYSR 104
                 57899******************99988766 PP

  == domain 2    score: -1.5 bits;  conditional E-value: 0.16
   TIGR03142  53 aeglld.eaeaeaakaEler 71 
                 +e  ld ++e+e+a++E+++
  MMETSP1137-20121227|6179_1 232 NEAELDaRQEFESAREEIKN 251
                 45555415889999999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (555 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       390  (0.0950756); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.15s 00:00:00.66 Elapsed: 00:00:00.67
# Mc/sec: 1093.34
//
Query:       MMETSP1137-20121227|6180_1  [L=505]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (505 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       672  (0.163823); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                         8  (0.00195027); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.76u 0.16s 00:00:00.92 Elapsed: 00:00:00.62
# Mc/sec: 1075.07
//
Query:       MMETSP1137-20121227|6182_1  [L=59]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (59 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        40  (0.00975134); expected 82.0 (0.02)
Passed bias filter:                       34  (0.00828864); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.13s 00:00:00.24 Elapsed: 00:00:00.36
# Mc/sec: 216.32
//
Query:       MMETSP1137-20121227|6183_1  [L=601]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (601 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        60  (0.014627); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.14s 00:00:00.53 Elapsed: 00:00:00.52
# Mc/sec: 1525.49
//
Query:       MMETSP1137-20121227|6184_1  [L=608]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0095   13.5   0.2        2.4    5.7   0.0    3.6  4  TIGR02552 LcrH_SycD: type III secretion low calcium response chaperone LcrH/SycD


Domain annotation for each model (and alignments):
>> TIGR02552  LcrH_SycD: type III secretion low calcium response chaperone LcrH/SycD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0      0.41   1.7e+03      26     125 ..     163     177 ..     154     185 .. 0.53
   2 ?   -1.4   0.0     0.091   3.7e+02      57      76 ..     327     346 ..     318     379 .. 0.86
   3 !    2.8   0.0    0.0048        19      53      81 ..     365     393 ..     359     404 .. 0.87
   4 !    5.7   0.0   0.00058       2.4      62     118 ..     549     606 ..     543     608 .] 0.87

  Alignments for each domain:
  == domain 1    score: -3.5 bits;  conditional E-value: 0.41
   TIGR02552  26 YnlyqqgkyeeAeklFqlLaaldpteakywlgLaaclqalkeyeeAiaaYalaaaldlddprpvyhaaecllalgekeeAlkaLklaieiaeekeeysel 125
                 + l +qgk++eA                                                                                     + l
  MMETSP1137-20121227|6184_1 163 MVLAEQGKLDEA-------------------------------------------------------------------------------------EPL 177
                 333445555555.....................................................................................444 PP

  == domain 2    score: -1.4 bits;  conditional E-value: 0.091
   TIGR02552  57 gLaaclqalkeyeeAiaaYa 76 
                 gLaa+l +l++ eeA   Y 
  MMETSP1137-20121227|6184_1 327 GLAAVLIELDRLEEAEPLYR 346
                 89999999999999988886 PP

  == domain 3    score: 2.8 bits;  conditional E-value: 0.0048
   TIGR02552  53 kywlgLaaclqalkeyeeAiaaYalaaal 81 
                 + +++L+ +l  l++ +eA   Y + ++ 
  MMETSP1137-20121227|6184_1 365 RAVFALGNVLRGLQKLQEAETLYNRLLQT 393
                 6799*******************987765 PP

  == domain 4    score: 5.7 bits;  conditional E-value: 0.00058
   TIGR02552  62 lqalkeyeeAiaaYalaaald.lddprpvyhaaecllalgekeeAlkaLklaieiaee 118
                  qa +   +A++aY+  + ++ +d+ r+v  +a +l++ g+ +eA+  L++a++ + +
  MMETSP1137-20121227|6184_1 549 EQAEDLSRRAVEAYETTLGAThPDTIRAVSNLAMVLTQRGKLAEAEPLLRRAMDSCTQ 606
                 577778889*****998877669999***************************99976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (608 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       108  (0.0263286); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.13s 00:00:00.52 Elapsed: 00:00:00.44
# Mc/sec: 1823.85
//
Query:       MMETSP1137-20121227|6185_1  [L=378]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.2e-15   54.2   0.0    1.7e-15   53.8   0.0    1.1  1  TIGR03903 TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
    1.3e-08   32.4   0.0    2.9e-08   31.3   0.0    1.5  1  TIGR03724 arch_bud32: Kae1-associated kinase Bud32
    0.00098   15.6   0.0     0.0018   14.8   0.0    1.3  1  TIGR01982 UbiB: 2-polyprenylphenol 6-hydroxylase


Domain annotation for each model (and alignments):
>> TIGR03903  TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.8   0.0   1.2e-18   1.7e-15       2     188 ..      54     239 ..      53     262 .. 0.84

  Alignments for each domain:
  == domain 1    score: 53.8 bits;  conditional E-value: 1.2e-18
   TIGR03903   2 tghkvaikllRedaaeeerlvaRFrReialCarLshPnivaLlDsGeaedgll.......FavFeyveGrtlrevLaadGaLpaaetgrLmlqvLDalaaahdaGvvhRDLkPqnimvsaadveshakvLDFGigaLlpgvedadeatltrttevlGsPaYaaPeqL.RgepvtaksDlYaWGLivleCLtGkrv 188
                 tg++vaik + +   e++   +R  Re+ + ++  h n+ aL D    ++g+l       + v e+++   l  ++ ++ +L+  +    + q+L +l a h+a v+hRDLkP n++v ++      k+ DFG++  +  ++      + + te++ +  Y aPe L  +e+  a  D+++ G i+ e L  k  
  MMETSP1137-20121227|6185_1  54 TGEQVAIKKVANA-FEDAIDCKRMLREMRILQHFDHENVLALRDIMLPPPGRLdqswkdvYLVTELMD-TDLHYIIHSKQSLSDDHIQYFVYQILRGLKAIHSAKVLHRDLKPGNLLVNKN---CDLKICDFGLARGVDPTQG----AAVQLTEYVVTRWYRAPELLvENETYGAGIDIWSVGCILAEFLGRKAL 239
                 899*****99765.8*****************************999999987222222255555554.469999******************************************9765...5679*****9765444444....3445579***********984689999**************9976655 PP

>> TIGR03724  arch_bud32: Kae1-associated kinase Bud32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.3   0.0   2.1e-11   2.9e-08      33     150 ..      65     197 ..      39     203 .. 0.81

  Alignments for each domain:
  == domain 1    score: 31.3 bits;  conditional E-value: 2.1e-11
   TIGR03724  33 pelDeklrkeRtrkEarllseakkagv......ntPvvydvdpeekki.vmeyiegkklkdlleekel.......ellkevGelvgklHkagivhgDlttsNiiv.kddklyliDfGLgkkskevedkavDlh 150
                 + +++ +  +R+ +E+r+l++  ++ v        P +  +d++ k + ++ ++ +++l++++++k+         +++++ + +  +H+a+++h Dl + N++v k+ +l + DfGL++  +  +  av l 
  MMETSP1137-20121227|6185_1  65 NAFEDAIDCKRMLREMRILQHFDHENVlalrdiMLPPPGRLDQSWKDVyLVTELMDTDLHYIIHSKQSlsddhiqYFVYQILRGLKAIHSAKVLHRDLKPGNLLVnKNCDLKICDFGLARGVDPTQGAAVQLT 197
                 56778889999999999999887765411111156888888887666614578999********9888999989788999*************************4477999********9999998888875 PP

>> TIGR01982  UbiB: 2-polyprenylphenol 6-hydroxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   1.3e-06    0.0018     258     310 ..     131     190 ..     121     206 .. 0.76

  Alignments for each domain:
  == domain 1    score: 14.8 bits;  conditional E-value: 1.3e-06
   TIGR01982 258 kalaenlvesflkqvlr.......dgfFHaDlHpGNilvakdgkiialDfGivgrlseee 310
                 ++l+++ ++ f+ q+lr         + H Dl pGN+lv+k+  + + DfG+   +++ +
  MMETSP1137-20121227|6185_1 131 QSLSDDHIQYFVYQILRglkaihsAKVLHRDLKPGNLLVNKNCDLKICDFGLARGVDPTQ 190
                 5666677777776666533222225789***********************987777655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (378 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       117  (0.0285227); expected 82.0 (0.02)
Passed bias filter:                      109  (0.0265724); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.31u 0.15s 00:00:00.46 Elapsed: 00:00:00.46
# Mc/sec: 1084.61
//
Query:       MMETSP1137-20121227|6186_1  [L=465]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00012   20.3   0.1       0.46    8.8   0.0    2.7  2  TIGR01079 rplX_bact: ribosomal protein L24
    0.00019   19.6   0.2       0.41    8.9   0.0    2.5  2  TIGR01080 rplX_A_E: ribosomal protein L24
     0.0053   15.1   0.1        2.5    6.5   0.0    2.7  2  TIGR03696 Rhs_assc_core: RHS repeat-associated core domain


Domain annotation for each model (and alignments):
>> TIGR01079  rplX_bact: ribosomal protein L24
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.8   0.0   0.00033      0.46       5      26 ..      23      44 ..      19      55 .. 0.87
   2 !    8.4   0.0   0.00044       0.6       5      25 ..      97     117 ..      93     124 .. 0.89

  Alignments for each domain:
  == domain 1    score: 8.8 bits;  conditional E-value: 0.00033
   TIGR01079  5 kkgDtVlvisGkdkGkkGkvlk 26
                 k+D V+v+sG++ G+ G++ +
  MMETSP1137-20121227|6186_1 23 AKNDAVKVMSGEHAGRYGRISE 44
                59****************9976 PP

  == domain 2    score: 8.4 bits;  conditional E-value: 0.00044
   TIGR01079   5 kkgDtVlvisGkdkGkkGkvl 25 
                  k+D V+v+sG++ G+ G++ 
  MMETSP1137-20121227|6186_1  97 AKNDAVKVMSGEHAGRYGRIS 117
                 59****************997 PP

>> TIGR01080  rplX_A_E: ribosomal protein L24
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.9   0.0    0.0003      0.41      37      64 ..      17      44 ..       9      63 .. 0.81
   2 !    8.2   0.0   0.00049      0.68      38      64 ..      92     118 ..      83     134 .. 0.86

  Alignments for each domain:
  == domain 1    score: 8.9 bits;  conditional E-value: 0.0003
   TIGR01080 37 kralpvrkgdkvrilrGdfkGkeGkvlk 64
                k+a +  k+d v+++ G+ +G+ G++++
  MMETSP1137-20121227|6186_1 17 KKANRPAKNDAVKVMSGEHAGRYGRISE 44
                56666679******************87 PP

  == domain 2    score: 8.2 bits;  conditional E-value: 0.00049
   TIGR01080  38 ralpvrkgdkvrilrGdfkGkeGkvlk 64 
                 +a +  k+d v+++ G+ +G+ G++++
  MMETSP1137-20121227|6186_1  92 KANRPAKNDAVKVMSGEHAGRYGRISE 118
                 55566799****************986 PP

>> TIGR03696  Rhs_assc_core: RHS repeat-associated core domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.5   0.0    0.0037       5.1      33      51 ..      52      70 ..      34      80 .. 0.84
   2 !    6.5   0.0    0.0019       2.5      27      51 ..     120     144 ..     101     153 .. 0.81

  Alignments for each domain:
  == domain 1    score: 5.5 bits;  conditional E-value: 0.0037
   TIGR03696 33 ngaRyYdpelgrFlspDpi 51
                ++ R+Yd ++  ++++D +
  MMETSP1137-20121227|6186_1 52 YRVRFYDGTVSEWMAEDSV 70
                89***************75 PP

  == domain 2    score: 6.5 bits;  conditional E-value: 0.0019
   TIGR03696  27 etglyyngaRyYdpelgrFlspDpi 51 
                 ++g   ++ R+Yd ++  ++++D +
  MMETSP1137-20121227|6186_1 120 AQGDEPYRVRFYDGTVSEWMAEDSV 144
                 4666779****************75 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (465 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.33u 0.17s 00:00:00.50 Elapsed: 00:00:00.43
# Mc/sec: 1427.32
//
Query:       MMETSP1137-20121227|6187_1  [L=112]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (112 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        54  (0.0131643); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.12s 00:00:00.26 Elapsed: 00:00:00.30
# Mc/sec: 492.76
//
Query:       MMETSP1137-20121227|6188_1  [L=902]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.4e-27   92.1   1.3    1.1e-25   87.8   0.0    2.5  3  TIGR02956 TMAO_torS: TMAO reductase sytem sensor TorS
    1.1e-12   45.1   0.0    1.1e-12   45.1   0.0    2.0  2  TIGR02916 PEP_his_kin: putative PEP-CTERM system histidine kinase
    6.2e-12   43.0   0.4    1.6e-09   35.1   0.0    2.2  2  TIGR02966 phoR_proteo: phosphate regulon sensor kinase PhoR
    8.5e-10   36.0   0.1    3.3e-09   34.0   0.0    2.0  2  TIGR01386 cztS_silS_copS: heavy metal sensor kinase
    1.4e-08   31.5   0.7    2.4e-08   30.8   0.0    1.6  2  TIGR02938 nifL_nitrog: nitrogen fixation negative regulator NifL
    5.4e-07   27.0   0.0    8.7e-07   26.3   0.0    1.3  1  TIGR02154 PhoB: phosphate regulon transcriptional regulatory protein PhoB
    4.6e-06   23.0   0.1    0.00018   17.7   0.0    2.2  2  TIGR03785 marine_sort_HK: proteobacterial dedicated sortase system histidine kinase
    0.00099   16.6   0.0     0.0027   15.2   0.0    1.7  1  TIGR01387 cztR_silR_copR: heavy metal response regulator


Domain annotation for each model (and alignments):
>> TIGR02956  TMAO_torS: TMAO reductase sytem sensor TorS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.7     0.024        12     441     500 ..     249     307 ..     216     316 .. 0.76
   2 !   87.8   0.0   2.1e-28   1.1e-25     519     692 ..     379     555 ..     351     567 .. 0.86
   3 ?   -2.6   0.0      0.42   2.1e+02     792     820 ..     873     901 ..     797     902 .] 0.66

  Alignments for each domain:
  == domain 1    score: 1.5 bits;  conditional E-value: 0.024
   TIGR02956 441 erLneEvlnHakAraeAeeAnrAKSaFLAtmSHEiRTPlnGvlGTleLLadtkLtseqqk 500
                 + +  E  + +  r++A+e  + +  +L +m H+  TP+  vl  l L+ +++ + +  +
  MMETSP1137-20121227|6188_1 249 HAIRCEHRALEAERQTADERLQQRNRYLGAMCHDFGTPVS-VLQMLLLMMQKRVMRDRTR 307
                 5566666777788*************************85.7888888888877776655 PP

  == domain 2    score: 87.8 bits;  conditional E-value: 2.1e-28
   TIGR02956 519 iLDySkiEaG.hlsiserafdlskLledvlhlmesraqekgiqLsleidedlpevlqgDlsrirQvliNlvgNaiKFTdrGsvvlrvslndds.llfeVeDtGvGiaeeeqetlFkaftqae.grkksgGTGLGLAiskrlveamdgelsveSelgkGScFafelplergkkaeksa 692
                  +  Sk+ aG  l   +++    +L  +   + +   ++  ++ ++++d d+p+v+q+D + +  +l+N+ +N++K T +Gsv+++    ++s l+feV DtG G++ e   +lF++f  a     ++  TGLGL  sk+l+e+++g ++   + + G +F  e+p++   +a+ ++
  MMETSP1137-20121227|6188_1 379 AIAXSKLQAGgXLVPDRKPXXXAELXXKSASIARDTGKSDRVTVQTHTDADIPHVVQTDANWLFMILVNFASNSMKHTRQGSVTISAIRVGESlLRFEVSDTGSGVPAEFVPSLFQPFCSAStAATSVESTGLGLYHSKQLAEILGGSVGYRANADGGATFYVEVPIQPVTAARAKE 555
                 56679999987888899999999**************************************************************865555555***************************98889999*************************************98776665554 PP

  == domain 3    score: -2.6 bits;  conditional E-value: 0.42
   TIGR02956 792 ekylaagFdgflaKPlsekqLvatlakil 820
                 +  l+ag d  + KP   ++L++tl++ l
  MMETSP1137-20121227|6188_1 873 AACLDAGMDDAIVKPFDARTLYSTLQTFL 901
                 456889*******************9887 PP

>> TIGR02916  PEP_his_kin: putative PEP-CTERM system histidine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.1   2.9       1.8   9.2e+02      10     184 ..      58     221 ..      51     229 .. 0.57
   2 !   45.1   0.0   2.2e-15   1.1e-12     562     679 .]     423     544 ..     399     544 .. 0.81

  Alignments for each domain:
  == domain 1    score: -4.1 bits;  conditional E-value: 1.8
   TIGR02916  10 ylvlslllvaawrkrlaggllllaaalsavwalasaalvllkkalkllvlvlevlrdavwlaflltllrrtltsakeklqklkllqalaallvllllvleaalvlpdlateellvalvsanllllgllllavigLvlvEqlyrsvseeerWaikflclglaalfvfdfylyadal 184
                 +++  + l+ a   +  +  l+ + ++sa++a  + +++ l+k   l  lvle +  + + + l+++       a+++++ ++ l++   + +  +l + a+ ++  + + + +   +  n+l+++ l++ + +++   +l r  ++   W++     ++  ++vf + l+a ++
  MMETSP1137-20121227|6188_1  58 FFIS-MGLLRALATQELPASLAGTLLISAIFA-PIRHAAHLAKNQALAHLVLEYFAFSLLAIRLIMVNF-----AVPDNS-FEPLETCLQACGWDILRPVAMSIVLSMVPMR-QSFVIIINILYASRLAATIDTFLSAHNLXRVEDSIFEWGVXIN--SMLPVYVFAVSLFAYSM 221
                 4333.333344445555666777888889998.555555566666677778888876665333333332.....333333.3333333333333333333333333334444.3345667888888888888888888888888888888887644..56677777777777666 PP

  == domain 2    score: 45.1 bits;  conditional E-value: 2.2e-15
   TIGR02916 562 rievsvdkdlevradrerlervlghLvqNAleATeeeGkVkirverek.eaavieieDsGqGmseeFirerLFkPFdttKk.....aGmGiGvyesreyveelGGeieveStpgkGtiftlvlP 679
                 +++ ++d+   v++d + l  +l++ + N +  T+ +G+V+i++ r + + ++ e++D+G+G++ eF+   LF+PF ++ +        G+G+y s+++ e lGG++  ++++  G++f + +P
  MMETSP1137-20121227|6188_1 423 QTHTDADIPHVVQTDANWLFMILVNFASNSMKHTR-QGSVTISAIRVGeSLLRFEVSDTGSGVPAEFV-PSLFQPFCSASTaatsvESTGLGLYHSKQLAEILGGSVGYRANADGGATFYVEVP 544
                 223333444779999*****************996.6******999996889***************6.68*****8765521112468******************************99887 PP

>> TIGR02966  phoR_proteo: phosphate regulon sensor kinase PhoR
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.8   0.3    0.0025       1.3      95     153 ..     255     311 ..     212     325 .. 0.66
   2 !   35.1   0.0   3.1e-12   1.6e-09     207     330 ..     416     540 ..     380     543 .. 0.79

  Alignments for each domain:
  == domain 1    score: 5.8 bits;  conditional E-value: 0.0025
   TIGR02966  95 eelllvarDvtklkrleqmRrdFvanvsHELrtPLtvlkGyletleeepeeddeaaeka 153
                 +++l   r  t  +rl q R+ ++  + H+  tP++vl+  l +++++ ++d+ ++ + 
  MMETSP1137-20121227|6188_1 255 HRALEAERQ-TADERL-QQRNRYLGAMCHDFGTPVSVLQMLLLMMQKRVMRDRTRKCQE 311
                 444444443.444555.45999***********************99886555544433 PP

  == domain 2    score: 35.1 bits;  conditional E-value: 3.1e-12
   TIGR02966 207 eekehqielev..daavkvkgdeeeLrsalsNLveNAikytpeggeitvrweeeeeg.aelsvkDtGeGIaaehlprltERFYRvdksrsretgGtGLGLaIvkHvlerheaeLeieSelgkGstFs 330
                 ++ ++++++++  d    v+ d + L  +l N+ +N +k+t++g ++t+++ +  e+  +++v+DtG G++ae +p l+  F   +++ + +   tGLGL   k   e   +++  + +   G+tF 
  MMETSP1137-20121227|6188_1 416 KSDRVTVQTHTdaDIPHVVQTDANWLFMILVNFASNSMKHTRQG-SVTISAIRVGESlLRFEVSDTGSGVPAEFVPSLFQPFCSASTAAT-SVESTGLGLYHSKQLAEILGGSVGYRANADGGATFY 540
                 3334455554411667789**********************875.78999888887779***********************99988765.56679***9888887777777777777777777776 PP

>> TIGR01386  cztS_silS_copS: heavy metal sensor kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.1      0.62   3.2e+02     236     272 ..     267     308 ..     206     339 .. 0.66
   2 !   34.0   0.0   6.4e-12   3.3e-09     346     457 .]     433     544 ..     415     544 .. 0.90

  Alignments for each domain:
  == domain 1    score: -2.2 bits;  conditional E-value: 0.62
   TIGR01386 236 dafqrlsqFsadlAHelRtPltn.....LltqtqvaLsreRs 272
                 +  q+ +++   + H+  tP++      L++q  v+  r R+
  MMETSP1137-20121227|6188_1 267 ERLQQRNRYLGAMCHDFGTPVSVlqmllLMMQKRVMRDRTRK 308
                 344444555555666666666642222234455554444444 PP

  == domain 2    score: 34.0 bits;  conditional E-value: 6.4e-12
   TIGR01386 346 evegdaqlfrRalsNLlsNAlrytpegstievrverradevevsventgkgipeeelsrlFdRFYRvdaarsnseegtGLGLaIvrsiveaHgGeveaes.adgktrfklkfp 457
                 +v+ da+ +   l N  sN +++t +gs +   ++  ++ ++ +v++tg+g+p+e  + lF  F  +  a +   e+tGLGL   + ++e+ gG+v   + adg  +f +++p
  MMETSP1137-20121227|6188_1 433 VVQTDANWLFMILVNFASNSMKHTRQGSVTISAIRVGESLLRFEVSDTGSGVPAEFVPSLFQPFCSASTAATSV-ESTGLGLYHSKQLAEILGGSVGYRAnADGGATFYVEVP 544
                 57788888888999**************988888888889************************9988887655.56**********************999******99987 PP

>> TIGR02938  nifL_nitrog: nitrogen fixation negative regulator NifL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.5         1   5.3e+02     268     306 ..     264     304 ..     245     324 .. 0.65
   2 !   30.8   0.0   4.6e-11   2.4e-08     388     493 ..     438     544 ..     411     545 .. 0.83

  Alignments for each domain:
  == domain 1    score: -3.4 bits;  conditional E-value: 1
   TIGR02938 268 aeeeklealretlsaaihrlqgPlnlisaaisvlerr..gd 306
                 + +e+l+     l a  h +  P+ ++   + ++++r   d
  MMETSP1137-20121227|6188_1 264 TADERLQQRNRYLGAMCHDFGTPVSVLQMLLLMMQKRvmRD 304
                 34678888888889999999999999999999999983222 PP

  == domain 2    score: 30.8 bits;  conditional E-value: 4.6e-11
   TIGR02938 388 lrslfkalvdnaieamaqkqvkrrelsist.aveddlirveiedsGPGiPadlrlkvfePffttkass..rkhvGmGlavaqeivakhaGlidvdddyreGcrivvele 493
                    lf  lv+ a ++m++   ++  ++is+ +v + l+r e+ d+G G+Pa+++   f+Pf ++ ++    +  G+Gl   +++    +G +    +  +G    ve++
  MMETSP1137-20121227|6188_1 438 ANWLFMILVNFASNSMKHT--RQGSVTISAiRVGESLLRFEVSDTGSGVPAEFVPSLFQPFCSASTAAtsVESTGLGLYHSKQLAEILGGSVGYRANADGGATFYVEVP 544
                 4468899**********99..778888876378999*************************9876544228899**********9999999999999999999988876 PP

>> TIGR02154  PhoB: phosphate regulon transcriptional regulatory protein PhoB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.3   0.0   1.7e-09   8.7e-07      25     119 ..     796     900 ..     782     902 .] 0.76

  Alignments for each domain:
  == domain 1    score: 26.3 bits;  conditional E-value: 1.7e-09
   TIGR02154  25 egyevveaedaeealalikeelP...dlilldWmlpgtsGielarrlrkeee......treiPii.mltargeeedrvrgletGaddyvvkPfspkellarikav 119
                 +g  ++ea  +eeal +++ e+P    + ll   + g  G e ++ +r+ e+       + + i+ +lt   +e  r ++l++G dd +vkPf ++ l + +++ 
  MMETSP1137-20121227|6188_1 796 TGMLPIEADCGEEALLMLTAEQPvkvSVYLLAVHMFGLDGRETCKAIRQWEQshgvvqSKRLCIVgLLTISNDEAGRAACLDAGMDDAIVKPFDARTLYSTLQTF 900
                 456678899999999999999984444678888888999999999998866511122145677775899****************************99887765 PP

>> TIGR03785  marine_sort_HK: proteobacterial dedicated sortase system histidine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.3     0.013       6.5     418     528 ..     209     315 ..     173     320 .. 0.77
   2 !   17.7   0.0   3.5e-07   0.00018     572     703 .]     412     544 ..     344     544 .. 0.81

  Alignments for each domain:
  == domain 1    score: 2.7 bits;  conditional E-value: 0.013
   TIGR03785 418 igtlaLllfASrlSsRIrrLrkeaeaaideqgrisgaiqa..sksrDEiGdLsrsFaeivarLreYteYLenlssrLsHElrTPvAvVrsSLenLelqklekekqkYleRAqe 528
                 + ++a+ lfA   S+ Ir+ r+  e+ ++ +g  ++++ a     r E   L+   +++  rL++ ++YL  +     H+  TPv v +  L  +++    + ++k  e A++
  MMETSP1137-20121227|6188_1 209 VYVFAVSLFAY--SMSIRQSRSLYEQMMQLHGAHREEVLAkeHAIRCEHRALEAERQTADERLQQRNRYLGAM----CHDFGTPVSVLQMLLLMMQKRVMRDRTRKCQEAAAA 315
                 33344444554..55577888888888888888888875511457889999999999999**********998....59*********9999999988888888777776665 PP

  == domain 2    score: 17.7 bits;  conditional E-value: 3.5e-07
   TIGR03785 572 qqlyeeqrfeleieeedl...vlrgspellaQllDKlvdNaieFskedglIevslkekkkealltveNeGpplPedlkeklFdsmvSvRaqkaqeqpHLGlGLyIvrliadfHqgeikaeNraqedgvvfevslp 703
                 +++ ++ r+++++++++    v++  ++ l  +l    +N++  ++++++    ++  ++    +v+  G+ +P++   +lF+++ S     a++ +  GlGLy ++ +a+  +g++  + +a+  g +f v++p
  MMETSP1137-20121227|6188_1 412 RDTGKSDRVTVQTHTDADiphVVQTDANWLFMILVNFASNSMKHTRQGSVTISAIRVGESLLRFEVSDTGSGVPAEFVPSLFQPFCSAS-TAATSVESTGLGLYHSKQLAEILGGSVGYRANAD-GGATFYVEVP 544
                 5566666666666655444558888999999999999999999999988766667777788889***********************98.66677779*******************9988877.7888887766 PP

>> TIGR01387  cztR_silR_copR: heavy metal response regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0   5.2e-06    0.0027      42     114 ..     820     901 ..     800     902 .] 0.76

  Alignments for each domain:
  == domain 1    score: 15.2 bits;  conditional E-value: 5.2e-06
   TIGR01387  42 dydliildvmlpgldGwevlkalresaketpvl.........lltardevadkvkGlelGaddylvkpfefaellarvrtll 114
                 +  + +l v + gldG e  ka+r+ ++ + v+         llt  ++ a +   l+ G dd +vkpf+   l + ++t l
  MMETSP1137-20121227|6188_1 820 KVSVYLLAVHMFGLDGRETCKAIRQWEQSHGVVqskrlcivgLLTISNDEAGRAACLDAGMDDAIVKPFDARTLYSTLQTFL 901
                 5567889999*************9876665554333333333699999**********************999988877766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (902 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       184  (0.0448562); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         8  (0.00195027); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.67u 0.19s 00:00:00.86 Elapsed: 00:00:00.95
# Mc/sec: 1253.20
//
Query:       MMETSP1137-20121227|6189_1  [L=173]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        8.1    4.5   9.3        5.3    5.0   0.9    2.5  2  TIGR03504 FimV_Cterm: FimV C-terminal domain


Domain annotation for each model (and alignments):
>> TIGR03504  FimV_Cterm: FimV C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.9    0.0013       5.3      23      39 ..       5      21 ..       3      24 .. 0.93
   2 ?    3.4   1.0    0.0043        18      23      39 ..     157     173 .]     153     173 .] 0.87

  Alignments for each domain:
  == domain 1    score: 5.0 bits;  conditional E-value: 0.0013
   TIGR03504 23 eEVieeGdeaqkeeAra 39
                +EV++++ e+++++Ar+
  MMETSP1137-20121227|6189_1  5 REVVAQAREEVRRRARR 21
                69*************98 PP

  == domain 2    score: 3.4 bits;  conditional E-value: 0.0043
   TIGR03504  23 eEVieeGdeaqkeeAra 39 
                 +EV+e++ e++ ++Ar+
  MMETSP1137-20121227|6189_1 157 REVVEQAREEVSRRARR 173
                 69999999999999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (173 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       154  (0.0375427); expected 82.0 (0.02)
Passed bias filter:                      102  (0.0248659); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.22u 0.15s 00:00:00.37 Elapsed: 00:00:00.59
# Mc/sec: 387.02
//
Query:       MMETSP1137-20121227|6190_1  [L=1108]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1108 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        77  (0.0187713); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.63u 0.16s 00:00:00.79 Elapsed: 00:00:00.52
# Mc/sec: 2812.38
//
Query:       MMETSP1137-20121227|6191_1  [L=351]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        2.2    5.8  11.2       0.22    9.1   4.6    1.5  2  TIGR03354 VI_FHA: type VI secretion system FHA domain protein


Domain annotation for each model (and alignments):
>> TIGR03354  VI_FHA: type VI secretion system FHA domain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   4.6   5.3e-05      0.22     106     271 ..      59     222 ..      53     225 .. 0.73
   2 ?   -2.6   0.1      0.19   7.7e+02     228     260 ..     301     331 ..     271     334 .. 0.54

  Alignments for each domain:
  == domain 1    score: 9.1 bits;  conditional E-value: 5.3e-05
   TIGR03354 106 gaapafdelaptpetlvtaalqqvsseaseedlddslteagegaaprpapqaasldPlkaldqepasaadlddgalsaelaeevaealpadlasidaestlepelaplpaaqpapapqeqeqaseav.altaflrglgldlelldsqaaedvleelgrllralveGL 271
                 +a++  +  +++p   ++++++ +++ea+ ++     t++++++  +++p+aa+++P++ +++ p  a+d +  a+ ++la+++ +    ++++ d++   +   +   +  p +a++e   as+    l+a++r+++ +l+++++++ +d +++ ++ll +l eGL
  MMETSP1137-20121227|6191_1  59 AAQEDSEGIQDNPSASSSHDSPRSTPEARAAREGARGTSHPSMPDSKEQPDAAASEPFPTVGKGPCAASDSQFLAEAESLAKQLTN--GMNFDDEDDSFQTKGGAKSGTTWGPSAADSEPSLASDMEaTLAALARSAE-SLTKQQAADDDDGTAACMELLMQLGEGL 222
                 45555666778888899999999****************************99***************999997777777777775..33333333332222222223333344444333334443349999999999.9999999999999999999999999998 PP

  == domain 2    score: -2.6 bits;  conditional E-value: 0.19
   TIGR03354 228 aseavaltaflrglgldlelldsqaaedvleel 260
                 ++++ +++++lr+ + ++e  d+ a  ++++e+
  MMETSP1137-20121227|6191_1 301 TKQQAVVAKILRAYEENPEDTDTVA--QLMQEM 331
                 2222266666666665555555554..555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (351 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        98  (0.0238908); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.27u 0.17s 00:00:00.44 Elapsed: 00:00:00.48
# Mc/sec: 965.17
//
Query:       MMETSP1137-20121227|6192_1  [L=315]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (315 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        77  (0.0187713); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.17s 00:00:00.41 Elapsed: 00:00:00.43
# Mc/sec: 966.90
//
Query:       MMETSP1137-20121227|6193_1  [L=227]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (227 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        48  (0.0117016); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.17s 00:00:00.37 Elapsed: 00:00:00.45
# Mc/sec: 665.81
//
Query:       MMETSP1137-20121227|6194_1  [L=475]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (475 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        69  (0.0168211); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.16s 00:00:00.49 Elapsed: 00:00:00.40
# Mc/sec: 1567.37
//
Query:       MMETSP1137-20121227|6195_1  [L=638]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (638 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       143  (0.034861); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.15s 00:00:00.55 Elapsed: 00:00:00.48
# Mc/sec: 1754.36
//
Query:       MMETSP1137-20121227|6196_1  [L=447]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.6e-98  327.6   0.0    1.8e-60  202.5   0.0    2.0  2  TIGR00420 trmU: tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
    0.00015   17.9   0.0    0.00023   17.3   0.0    1.1  1  TIGR03104 trio_amidotrans: asparagine synthase family amidotransferase
    0.00033   17.8   0.0       0.25    8.3   0.0    2.2  2  TIGR00552 nadE: NAD+ synthetase
     0.0017   15.2   0.0     0.0025   14.7   0.0    1.2  1  TIGR01536 asn_synth_AEB: asparagine synthase (glutamine-hydrolyzing)
     0.0024   15.1   0.0       0.17    8.9   0.0    2.1  2  TIGR00884 guaA_Cterm: GMP synthase (glutamine-hydrolyzing), C-terminal domain
  ------ inclusion threshold ------
      0.022   11.6   0.0      0.033   11.1   0.0    1.2  1  TIGR00342 TIGR00342: thiamine biosynthesis/tRNA modification protein ThiI


Domain annotation for each model (and alignments):
>> TIGR00420  trmU: tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  123.2   0.0   3.5e-39   2.4e-36       2     130 ..      15     143 ..      14     166 .. 0.93
   2 !  202.5   0.0   2.6e-63   1.8e-60     136     344 ..     210     430 ..     200     433 .. 0.90

  Alignments for each domain:
  == domain 1    score: 123.2 bits;  conditional E-value: 3.5e-39
   TIGR00420   2 kvivglsgGvDssvsalllkkqgyevkgvylklweedekeddl..eCssaedlkdaqaiaeklgiklekvnfeeeywnkvfeelieeykeGstPnPdilCnkliKFgalleyakeklgadkiatGHYarvk 130
                 +v+v+lsgGvDssv++ ll++ g   ++ yl++w ede+ +    eC ++ed++ a a++e+ g++le v +++ey + v+e+li+e  +G+tPnPdi+Cn +iK ga+l+++ +      +a GHYar +
  MMETSP1137-20121227|6196_1  15 EVAVLLSGGVDSSVALRLLHDAGVRCRAFYLRIWLEDEQAHASrgECPWEEDWACASAVCEQAGVPLEAVSLQDEYSQLVVEYLISEAAAGRTPNPDIMCNSRIKXGAFLDKVGR--HFAAVASGHYARST 143
                 79**********************************9998876779*******************************************************************99..5999*******976 PP

  == domain 2    score: 202.5 bits;  conditional E-value: 2.6e-63
   TIGR00420 136 slllraldknKDqsYfLselskevlakllfPlgellKkevrqlAkeanlstaekkdsqgiCfigerkfkdflkkylpvkkGeiidvdtekvigeHdGlwfytiGqrkGlslg.....gakepwfvvekdleknellvsk..dkeelaskellveelswlkk...pkale.lrltvkiRyrqkpvscklkllkdnl.ievsldepqaavtpGqsavlYkddi 344
                 ++ll + d +KDq+YfLs+l++++l+++lfP+g+l K+evr+lA+e++l++ ++kdsqgiCf+g+ ++ dfl  +l +++G + + +t++vig+H Glwf+t+Gqr+Gl        +ak+pw+vv+kd+e+n l vs+     +  ++ + ++ l+wl+      + e + l+vk+R+  +   + +++ +    + v+l +++++++pGq+a +Y++d+
  MMETSP1137-20121227|6196_1 210 AQLLMSADPHKDQTYFLSQLRQDQLERVLFPIGHLPKSEVRALAEELQLPNRQRKDSQGICFLGQLNYDDFLRDHLGERPGPVFEFETKQVIGTHRGLWFHTVGQRRGLVPVltnafAAKGPWYVVKKDVENNALHVSReyTAADKSRNAFNANSLNWLSGnppAADGEqIPLQVKVRHGAQMHDALVTVHEGGArVGVQLSSRDKGLAPGQFAAFYDGDV 430
                 568999******************************************************************************************************96445688899********************544556778899********98765344443699******99988777777665545**********************986 PP

>> TIGR03104  trio_amidotrans: asparagine synthase family amidotransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.0   3.4e-07   0.00023     254     286 ..       7      39 ..       2      58 .. 0.83

  Alignments for each domain:
  == domain 1    score: 17.3 bits;  conditional E-value: 3.4e-07
   TIGR03104 254 krrlvadvpvGvllsGGldssllvallaeagve 286
                 +r  +a  +v vllsGG+dss+ + ll++agv+
  MMETSP1137-20121227|6196_1   7 SRWPRASEEVAVLLSGGVDSSVALRLLHDAGVR 39 
                 44458999**********************986 PP

>> TIGR00552  nadE: NAD+ synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.1   0.0   0.00088       0.6      24      91 ..      15      91 ..      10     107 .. 0.64
   2 !    8.3   0.0   0.00037      0.25     156     179 ..     238     261 ..     234     264 .. 0.92

  Alignments for each domain:
  == domain 1    score: 7.1 bits;  conditional E-value: 0.00088
   TIGR00552 24 gvvlGlSGGiDSavvaalavealgkeevlalil.pesnqas........eqdvqdalalveklgietkeikiepiaa 91
                +v + lSGG+DS+v   l + a+ + +++ l++  e +qa         e+d   a+a++e+ g+  + +++++ ++
  MMETSP1137-20121227|6196_1 15 EVAVLLSGGVDSSVALRLLHDAGVRCRAFYLRIwLEDEQAHasrgecpwEEDWACASAVCEQAGVPLEAVSLQDEYS 91
                566779******99999998888875555555413333322222222334567777777777777777777666655 PP

  == domain 2    score: 8.3 bits;  conditional E-value: 0.00037
   TIGR00552 156 laplaellKtqvkeLakelnvPee 179
                 l p+++l+K++v++La+el  P++
  MMETSP1137-20121227|6196_1 238 LFPIGHLPKSEVRALAEELQLPNR 261
                 67*******************985 PP

>> TIGR01536  asn_synth_AEB: asparagine synthase (glutamine-hydrolyzing)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0   3.6e-06    0.0025     250     317 ..      11      88 ..       2     102 .. 0.75

  Alignments for each domain:
  == domain 1    score: 14.7 bits;  conditional E-value: 3.6e-06
   TIGR01536 250 vadvpvgvllSGGlDSslvaaiakkeaksevktFsigfe.dskdldesk..........aarkvadelgtehkevlise 317
                 +a+ +v+vllSGG+DSs+   +  + a  + + F +++  ++++ ++s+           a++v ++ g+ ++ v ++ 
  MMETSP1137-20121227|6196_1  11 RASEEVAVLLSGGVDSSVALRL-LHDAGVRCRAFYLRIWlEDEQAHASRgecpweedwaCASAVCEQAGVPLEAVSLQD 88 
                 6999************965554.45556689999888876666666676888888888888888888888888777765 PP

>> TIGR00884  guaA_Cterm: GMP synthase (glutamine-hydrolyzing), C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.9   0.0   0.00025      0.17      17      39 ..      14      36 ..       8      53 .. 0.85
   2 !    3.8   0.0    0.0093       6.4     156     180 ..     236     260 ..     221     266 .. 0.85

  Alignments for each domain:
  == domain 1    score: 8.9 bits;  conditional E-value: 0.00025
   TIGR00884 17 akviialsGGvdssvaavllhka 39
                ++v + lsGGvdssva  llh a
  MMETSP1137-20121227|6196_1 14 EEVAVLLSGGVDSSVALRLLHDA 36
                678889*************9987 PP

  == domain 2    score: 3.8 bits;  conditional E-value: 0.0093
   TIGR00884 156 klvePlrelfkdevrklgkelGlpe 180
                 +++ P+ +l k evr+l++el lp+
  MMETSP1137-20121227|6196_1 236 RVLFPIGHLPKSEVRALAEELQLPN 260
                 477899*****************97 PP

>> TIGR00342  TIGR00342: thiamine biosynthesis/tRNA modification protein ThiI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   4.8e-05     0.033     172     204 ..      13      45 ..      10      60 .. 0.82

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 4.8e-05
   TIGR00342 172 qgkvlaLlSgGiDSpVaaflvmkRGcrvvavhf 204
                 +++v +LlSgG+DS Va  l+   G+r  a ++
  MMETSP1137-20121227|6196_1  13 SEEVAVLLSGGVDSSVALRLLHDAGVRCRAFYL 45 
                 78999************9999999988877665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (447 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        89  (0.0216967); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                        20  (0.00487567); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.34u 0.12s 00:00:00.46 Elapsed: 00:00:00.51
# Mc/sec: 1156.85
//
Query:       MMETSP1137-20121227|6199_1  [L=203]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (203 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        51  (0.012433); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.15s 00:00:00.32 Elapsed: 00:00:00.41
# Mc/sec: 653.51
//
Query:       MMETSP1137-20121227|6201_1  [L=158]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0052   13.7   1.7     0.0059   13.6   1.1    1.2  1  TIGR00946 2a69: auxin efflux carrier


Domain annotation for each model (and alignments):
>> TIGR00946  2a69: auxin efflux carrier
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   1.1   1.4e-06    0.0059     217     284 ..      15      82 ..      11     126 .. 0.93

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 1.4e-06
   TIGR00946 217 ilksisiLsdaglgmalfslGlflalqpkkialgksvatlamavrflvgPavmavislaiglrgdlls 284
                 +   +s L+da++++ l+ lG  l+  p+   l   +    ++ r+++ P+  +++++ i+++g+++ 
  MMETSP1137-20121227|6201_1  15 LYMAVSKLGDAAVPINLLLLGAALSRPPRPGVLPRLTTLGLVLARMVLMPLCGLLFVYFIAIKGSKFV 82 
                 566799***************999999*******99999999**********************9875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (158 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        88  (0.0214529); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.17u 0.12s 00:00:00.29 Elapsed: 00:00:00.30
# Mc/sec: 695.14
//
Query:       MMETSP1137-20121227|6202_1  [L=109]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (109 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        74  (0.01804); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.12s 00:00:00.25 Elapsed: 00:00:00.63
# Mc/sec: 228.36
//
Query:       MMETSP1137-20121227|6203_1  [L=215]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (215 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        87  (0.0212092); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.16s 00:00:00.36 Elapsed: 00:00:00.30
# Mc/sec: 945.92
//
Query:       MMETSP1137-20121227|6204_1  [L=104]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (104 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        67  (0.0163335); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.15s 00:00:00.29 Elapsed: 00:00:00.26
# Mc/sec: 527.96
//
Query:       MMETSP1137-20121227|6205_1  [L=310]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.3e-48  162.0   0.0    6.5e-48  161.4   0.0    1.3  1  TIGR02244 HAD-IG-Ncltidse: HAD superfamily (subfamily IG) hydrolase, 5'-nucleotidase
    3.1e-06   25.0   0.0      0.027   12.1   0.0    2.4  2  TIGR02253 CTE7: HAD hydrolase, TIGR02253 family
    0.00055   17.9   0.0      0.059   11.3   0.0    2.5  2  TIGR01662 HAD-SF-IIIA: HAD hydrolase, family IIIA
     0.0032   15.1   0.0       0.04   11.5   0.0    2.3  1  TIGR02252 DREG-2: HAD hydrolase, REG-2-like, family IA
  ------ inclusion threshold ------
      0.012   13.1   0.0      0.042   11.4   0.0    1.8  2  TIGR02247 HAD-1A3-hyp: epoxide hydrolase N-terminal domain-like phosphatase
      0.016   13.5   0.0       0.12   10.6   0.0    2.3  2  TIGR01549 HAD-SF-IA-v1: HAD hydrolase, family IA, variant 1
      0.018   12.9   0.0          1    7.2   0.0    2.4  2  TIGR01484 HAD-SF-IIB: HAD hydrolase, family IIB
      0.032   11.6   0.0       0.19    9.1   0.0    2.0  2  TIGR01668 YqeG_hyp_ppase: HAD phosphatase, family IIIA


Domain annotation for each model (and alignments):
>> TIGR02244  HAD-IG-Ncltidse: HAD superfamily (subfamily IG) hydrolase, 5'-nucleotidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  161.4   0.0   1.3e-50   6.5e-48     170     341 ..       1     172 [.       1     174 [. 0.93

  Alignments for each domain:
  == domain 1    score: 161.4 bits;  conditional E-value: 1.3e-50
   TIGR02244 170 slkkkvaedlekyvlrdpklvklLeklkesGkklfLlTnsdykytdlvmkyllgeslke.kdWrdlFdvvivkakKPkFFt.eerplrevdvekdslklqevdklekgkvYsgGslkqleellkvrgkevLYvGDhiysDvlkskkkrgwrtaliieELeeEvkvlknskelre 341
                 +lk++v+ d+ ++v+ d ++ ++L +++++Gkkl L+Tnsd+ yt ++mk + +++l + + W+dlF++++v+a+KP+FF+ ++rp++++ +   +  + e  ++e+  +Y gG++k le++  + g+e+LYvGDhiysDv   k+  +wrt li++ELe Ev+ l++ ++ ++
  MMETSP1137-20121227|6205_1   1 QLKEEVMGDIPRFVNMDSEMSQALLEQRQAGKKLALITNSDWVYTSKLMKTVYNPFLPDgMVWTDLFEIIVVSACKPEFFYpDRRPVYQIATP--DGMMREGFRFEENGIYAGGNAKLLEKAFGITGEEILYVGDHIYSDVNMAKRGLSWRTCLIMQELELEVEGLSKGASAQR 172
                 589*******************************************************99*********************899999999885..55566777788888******************************************************99977766655 PP

>> TIGR02253  CTE7: HAD hydrolase, TIGR02253 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.6   0.0   0.00015     0.075      97     125 ..      18      46 ..      11      75 .. 0.83
   2 !   12.1   0.0   5.3e-05     0.027     161     186 ..     119     144 ..     115     180 .. 0.86

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 0.00015
   TIGR02253  97 pdvvkvLleLresGyrlgliTdgltekqw 125
                 +++ + Lle r++G +l+liT+++ ++  
  MMETSP1137-20121227|6205_1  18 SEMSQALLEQRQAGKKLALITNSDWVYTS 46 
                 678899****************9877654 PP

  == domain 2    score: 12.1 bits;  conditional E-value: 5.3e-05
   TIGR02253 161 krlgvkpeeavmvGDrlekDikGakn 186
                 k++g+ +ee ++vGD++++D++ ak+
  MMETSP1137-20121227|6205_1 119 KAFGITGEEILYVGDHIYSDVNMAKR 144
                 5799******************9996 PP

>> TIGR01662  HAD-SF-IIIA: HAD hydrolase, family IIIA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   0.0     0.024        12      29      53 ..      19      43 ..      11      55 .. 0.80
   2 !   11.3   0.0   0.00012     0.059      99     130 ..     114     144 ..     110     151 .. 0.85

  Alignments for each domain:
  == domain 1    score: 3.8 bits;  conditional E-value: 0.024
   TIGR01662 29 evidalaelkkeGykvvivtNqsgi 53
                e+ +al e +++G+k++++tN++ +
  MMETSP1137-20121227|6205_1 19 EMSQALLEQRQAGKKLALITNSDWV 43
                6778899999***********9855 PP

  == domain 2    score: 11.3 bits;  conditional E-value: 0.00012
   TIGR01662  99 leealkrlneidakesvvvGDavltDleaakr 130
                  + + k +  i+ +e+++vGD++ +D+++akr
  MMETSP1137-20121227|6205_1 114 AKLLEKAF-GITGEEILYVGDHIYSDVNMAKR 144
                 55566777.8********************86 PP

>> TIGR02252  DREG-2: HAD hydrolase, REG-2-like, family IA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.5   0.0   7.8e-05      0.04     144     196 ..      64     144 ..      11     152 .. 0.59

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 7.8e-05
   TIGR02252 144 eelfdfvvvSa.evgaeKPdpk.IFekaleklg..........................ikpeevlhiGDslekDvegaka 196
                 ++lf+++vvSa + ++  Pd++ ++++a  +                            i  ee+l++GD++  Dv+ ak 
  MMETSP1137-20121227|6205_1  64 TDLFEIIVVSAcKPEFFYPDRRpVYQIATPDGMmregfrfeengiyaggnakllekafgITGEEILYVGDHIYSDVNMAKR 144
                 566666666653445666665446666655544555566666666666666666666679*****************9974 PP

>> TIGR02247  HAD-1A3-hyp: epoxide hydrolase N-terminal domain-like phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   8.3e-05     0.042      89     161 ..       7      91 ..       1      97 [. 0.77
   2 ?   -1.6   0.0      0.77     4e+02     160     197 ..     116     155 ..     114     166 .. 0.74

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 8.3e-05
   TIGR02247  89 sse...ntkllpemvkaikslrakGfktalltnn..lfldk...eakeallpsdl..galFDe.vvEsckeglrKPDar.iyqlv 161
                  ++    +++  em +a+   r++G k al+tn   ++++k   +  +++lp  +  + lF+  vv +ck     PD r +yq++
  MMETSP1137-20121227|6205_1   7 MGDiprFVNMDSEMSQALLEQRQAGKKLALITNSdwVYTSKlmkTVYNPFLPDGMvwTDLFEIiVVSACKPEFFYPDRRpVYQIA 91 
                 5555545788899********************766899986656667888876622467886366779********99778876 PP

  == domain 2    score: -1.6 bits;  conditional E-value: 0.77
   TIGR02247 160 lvlerlgvkPeeivfL.DDLgsnlkaAak.lGittikved 197
                 l+++  g+  eei+++ D + s ++ A++ l + t ++ +
  MMETSP1137-20121227|6205_1 116 LLEKAFGITGEEILYVgDHIYSDVNMAKRgLSWRTCLIMQ 155
                 7788889999999999445788888887547787777655 PP

>> TIGR01549  HAD-SF-IA-v1: HAD hydrolase, family IA, variant 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.0      0.69   3.5e+02      71      97 ..      26      52 ..      12      57 .. 0.72
   2 ?   10.6   0.0   0.00023      0.12     119     147 ..     117     144 ..     107     145 .. 0.81

  Alignments for each domain:
  == domain 1    score: -0.6 bits;  conditional E-value: 0.69
   TIGR01549 71 lkelagyrlgiiSngslraqklllrkl 97
                 ++ ag++l +i+n +     +l+++ 
  MMETSP1137-20121227|6205_1 26 EQRQAGKKLALITNSDWVYTSKLMKTV 52
                467788899999988765555555555 PP

  == domain 2    score: 10.6 bits;  conditional E-value: 0.00023
   TIGR01549 119 flaaleslglepevlhvGDn.lsDieaakn 147
                 +++a   +g  +e+l+vGD+  sD+++ak+
  MMETSP1137-20121227|6205_1 117 LEKAFGITG--EEILYVGDHiYSDVNMAKR 144
                 555555565..8****************97 PP

>> TIGR01484  HAD-SF-IIB: HAD hydrolase, family IIB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   0.0     0.002         1      16      57 ..      15      55 ..       9      60 .. 0.90
   2 ?    2.8   0.0     0.042        22     187     211 ..     115     141 ..     112     145 .. 0.78

  Alignments for each domain:
  == domain 1    score: 7.2 bits;  conditional E-value: 0.002
   TIGR01484 16 elseelieaLerlrealgvkvvivTGRslaeikellkqlnle 57
                + + e+++aL + r+a g k++++T +++ ++ +l+k++ ++
  MMETSP1137-20121227|6205_1 15 NMDSEMSQALLEQRQA-GKKLALITNSDWVYTSKLMKTVYNP 55
                57889***********.9*******************87665 PP

  == domain 2    score: 2.8 bits;  conditional E-value: 0.042
   TIGR01484 187 alleeln.lkkeeilafGD.sgNDeem 211
                 +lle+++ ++ eeil++GD  + D+ m
  MMETSP1137-20121227|6205_1 115 KLLEKAFgITGEEILYVGDhIYSDVNM 141
                 67888888***********64555555 PP

>> TIGR01668  YqeG_hyp_ppase: HAD phosphatase, family IIIA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.0      0.25   1.3e+02      51      69 ..      23      41 ..      14      54 .. 0.76
   2 ?    9.1   0.0   0.00037      0.19     100     127 ..     117     144 ..     109     186 .. 0.80

  Alignments for each domain:
  == domain 1    score: -0.2 bits;  conditional E-value: 0.25
   TIGR01668 51 wieelkaaGlkllivSNna 69
                 + e ++aG+kl+++ N+ 
  MMETSP1137-20121227|6205_1 23 ALLEQRQAGKKLALITNSD 41
                55677999*********97 PP

  == domain 2    score: 9.1 bits;  conditional E-value: 0.00037
   TIGR01668 100 alkemgltseqvvvvGDrlfTDvllgnr 127
                  +k +g+t e+++ vGD+++ Dv +++r
  MMETSP1137-20121227|6205_1 117 LEKAFGITGEEILYVGDHIYSDVNMAKR 144
                 57899******************99998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (310 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       167  (0.0407118); expected 82.0 (0.02)
Passed bias filter:                      125  (0.0304729); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                         8  (0.00195027); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.28u 0.13s 00:00:00.41 Elapsed: 00:00:00.41
# Mc/sec: 997.97
//
Query:       MMETSP1137-20121227|6206_1  [L=332]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (332 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       120  (0.029254); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.14s 00:00:00.39 Elapsed: 00:00:00.38
# Mc/sec: 1153.17
//
Query:       MMETSP1137-20121227|6208_1  [L=368]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.2e-17   62.2   0.2    1.9e-17   61.5   0.2    1.2  1  TIGR02349 DnaJ_bact: chaperone protein DnaJ
    2.6e-14   50.4   0.2    2.6e-14   50.4   0.2    1.8  2  TIGR03835 termin_org_DnaJ: terminal organelle assembly protein TopJ


Domain annotation for each model (and alignments):
>> TIGR02349  DnaJ_bact: chaperone protein DnaJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.5   0.2   9.1e-21   1.9e-17       3      65 ..      56     117 ..      54     143 .. 0.95

  Alignments for each domain:
  == domain 1    score: 61.5 bits;  conditional E-value: 9.1e-21
   TIGR02349   3 YeiLgvskdAseeeikkAYrklakkyHPDrnkgekeaeekfkeineAyevLsdeekraqYDqf 65 
                 Ye+Lgv+ ++s   ik++Yr+la ++HPD+n+ +++a+e f++ ++AyevLs++e r++YD +
  MMETSP1137-20121227|6208_1  56 YELLGVKPTSSPIVIKRSYRRLATEWHPDKNP-HPKAKEIFQKYANAYEVLSNSEMRKNYDYL 117
                 ********************************.****************************75 PP

>> TIGR03835  termin_org_DnaJ: terminal organelle assembly protein TopJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.4   0.2   1.2e-17   2.6e-14       4      64 ..      55     115 ..      52     118 .. 0.97
   2 ?   -2.1   0.4     0.091   1.9e+02     302     364 ..     187     234 ..     161     252 .. 0.51

  Alignments for each domain:
  == domain 1    score: 50.4 bits;  conditional E-value: 1.2e-17
   TIGR03835   4 yyevLgidrDadeqeikkafrkLakkyhPDrnkaadaakifaeineandvLsnPkkraryD 64 
                  ye Lg+++ +    ik+++r+La  +hPD+n  + a++if+   +a++vLsn + r++yD
  MMETSP1137-20121227|6208_1  55 CYELLGVKPTSSPIVIKRSYRRLATEWHPDKNPHPKAKEIFQKYANAYEVLSNSEMRKNYD 115
                 5***********************************************************9 PP

  == domain 2    score: -2.1 bits;  conditional E-value: 0.091
   TIGR03835 302 tkpveavestveenlPeinettqaveptsevistvsveatdqlkpkevdqiqeelkktkeiev 364
                 ++ ++a  st   ++P      +a   ++++ s+   e ++                +k++e 
  MMETSP1137-20121227|6208_1 187 AEIASANSSTKTVAKPRSGSGKEATSSKAKTNSKKKSENDEA---------------AKAAEA 234
                 333334444444444444333344444444444444444433...............333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (368 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       226  (0.0550951); expected 82.0 (0.02)
Passed bias filter:                      134  (0.032667); expected 82.0 (0.02)
Passed Vit filter:                        20  (0.00487567); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.32u 0.17s 00:00:00.49 Elapsed: 00:00:00.69
# Mc/sec: 703.94
//
Query:       MMETSP1137-20121227|6209_1  [L=359]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.9e-05   21.5   0.0     0.0021   15.5   0.0    2.2  2  TIGR00385 dsbE: periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily
  ------ inclusion threshold ------
      0.026   12.8   0.2      0.098   11.0   0.0    2.0  2  TIGR02200 GlrX_actino: glutaredoxin-like protein


Domain annotation for each model (and alignments):
>> TIGR00385  dsbE: periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0     1e-06    0.0021      52     143 ..      95     188 ..      56     191 .. 0.72
   2 !    4.0   0.0    0.0034         7     118     154 ..     191     227 ..     187     237 .. 0.88

  Alignments for each domain:
  == domain 1    score: 15.5 bits;  conditional E-value: 1e-06
   TIGR00385  52 vqlltaevlkkgklvLlnvwasWCptCrae..h..plLkelakeglrivgvdykDesqkalkfLkelGnPyqlvlaDekGklaldlGvy.gaPetfl 143
                   ++++e l+k  lv++   +sWCp+C+    h  + L+e+ + g  +v++    +++     L+e  n   +vl D k +la +lG++ + Pet l
  MMETSP1137-20121227|6209_1  95 GAIVDSEDLTK-PLVIVFYRGSWCPYCNIHlnHlqKHLQEIQAAGGVLVAISPAPPDDS--VTLNEKHNLKFVVLSDTKNELAKKLGITfSLPETAL 188
                 35788888888.567777789******85422433678999999988899987665554..35888888888999************9746799865 PP

  == domain 2    score: 4.0 bits;  conditional E-value: 0.0034
   TIGR00385 118 yqlvlaDekGklaldlGvygaPetflvdgnGviryrh 154
                 y ++ +D+k   + ++  y +P +f+++++G i + h
  MMETSP1137-20121227|6209_1 191 YVALGKDHKAFYGSEVPEYPTPSSFVIGNDGKIAWLH 227
                 888999999999999999***************9866 PP

>> TIGR02200  GlrX_actino: glutaredoxin-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   4.8e-05     0.098       4      22 ..     111     129 ..     108     136 .. 0.83
   2 ?   -2.8   0.0      0.96     2e+03      13      44 ..     319     351 ..     317     353 .. 0.76

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 4.8e-05
   TIGR02200   4 vYatswCgyCaslkrtLdk 22 
                  Y  swC+yC+   + L+k
  MMETSP1137-20121227|6209_1 111 FYRGSWCPYCNIHLNHLQK 129
                 6999*******99999876 PP

  == domain 2    score: -2.8 bits;  conditional E-value: 0.96
   TIGR02200  13 CaslkrtL.dkdgaeYevvdiekdeeaadyvks 44 
                 Ca l +++ +   +  e+ d+   + +ad + +
  MMETSP1137-20121227|6209_1 319 CALLDTVVhHASALTLEAGDLSGXQHGADAADA 351
                 888888885666778899999999999988766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (359 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       111  (0.02706); expected 82.0 (0.02)
Passed bias filter:                      103  (0.0251097); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.29u 0.13s 00:00:00.42 Elapsed: 00:00:00.56
# Mc/sec: 846.14
//
Query:       MMETSP1137-20121227|6210_1  [L=306]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0073   14.5   0.0      0.015   13.4   0.0    1.5  1  TIGR02096 TIGR02096: conserved hypothetical protein


Domain annotation for each model (and alignments):
>> TIGR02096  TIGR02096: conserved hypothetical protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.0   3.7e-06     0.015       8      36 ..     137     165 ..     132     182 .. 0.80

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 3.7e-06
   TIGR02096   8 iealnsgdmdavlallaeDvlyddeagsr 36 
                 ++a+n++d+da+ + la++++y+d  ++ 
  MMETSP1137-20121227|6210_1 137 YAAFNARDADAAASYLADECVYEDLLLGP 165
                 789*********************88764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (306 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       100  (0.0243784); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.24u 0.12s 00:00:00.36 Elapsed: 00:00:00.42
# Mc/sec: 961.63
//
Query:       MMETSP1137-20121227|6211_1  [L=694]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.7e-05   20.1   0.0    5.7e-05   20.1   0.0    1.8  2  TIGR01622 SF-CC1: splicing factor, CC1-like family
    8.8e-05   19.6   1.1    9.8e-05   19.5   0.0    1.5  2  TIGR01628 PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family
  ------ inclusion threshold ------
       0.01   13.2   0.0      0.017   12.5   0.0    1.2  1  TIGR01661 ELAV_HUD_SF: ELAV/HuD family splicing factor


Domain annotation for each model (and alignments):
>> TIGR01622  SF-CC1: splicing factor, CC1-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.0   4.2e-08   5.7e-05     237     287 ..      24      76 ..      20     102 .. 0.77
   2 ?   -6.7   4.0         3   4.1e+03      37      66 ..     558     587 ..     538     631 .. 0.38

  Alignments for each domain:
  == domain 1    score: 20.1 bits;  conditional E-value: 4.2e-08
   TIGR01622 237 rqiFepFGeiel..vqlqkDpetGrskGyGFiqFsdaeeakeAleklNGlelA 287
                 r+ F   G i    ++++ +petG s G+ Fi+Fs  eea +A+ k NG  l 
  MMETSP1137-20121227|6211_1  24 RKFFLQVGTIVEngLEMPTNPETGASLGFAFIEFSSDEEATAAIVKANGYKLD 76 
                 5566666666432378899******************************8774 PP

  == domain 2    score: -6.7 bits;  conditional E-value: 3
   TIGR01622  37 Rersr.skerdrdfdrrdrdrdkyrdrerrs 66 
                 R+ sr   e d +  +r  ++d  ++r+ ++
  MMETSP1137-20121227|6211_1 558 RDYSRkYEEEDLK-MKRSLQGDMLKQRQEKH 587
                 1111100001110.01111222222221111 PP

>> TIGR01628  PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.0   7.2e-08   9.8e-05     108     166 ..      26      88 ..      19     100 .. 0.71
   2 ?   -3.2   0.1      0.53   7.3e+02     519     519 ..     589     589 ..     522     627 .. 0.53

  Alignments for each domain:
  == domain 1    score: 19.5 bits;  conditional E-value: 7.2e-08
   TIGR01628 108 tFskfGnilsckvat...deeGkSkgYgfvhfedeesAkeAieklNgvllndkevy.vgkfik 166
                  F + G+i+  ++ +    e+G S g++f++f  +e A++Ai k Ng  l++++ + v+ f  
  MMETSP1137-20121227|6211_1  26 FFLQVGTIVENGLEMptnPETGASLGFAFIEFSSDEEATAAIVKANGYKLDKSHTFiVNSFED 88 
                 566667777666544222488999999999999999999999999999888766541555654 PP

  == domain 2    score: -3.2 bits;  conditional E-value: 0.53
   TIGR01628 519 n 519
                  
  MMETSP1137-20121227|6211_1 589 A 589
                 1 PP

>> TIGR01661  ELAV_HUD_SF: ELAV/HuD family splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   1.3e-05     0.017      21      72 ..      24      77 ..      11      89 .. 0.59

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 1.3e-05
   TIGR01661 21 rslftsiGei..escklvrdkvtGqslGyGfvnyvreedaekavnslnGlrlqn 72
                r +f  +G i  +   +  +  tG slG+ f+++  +e+a  a+   nG +l +
  MMETSP1137-20121227|6211_1 24 RKFFLQVGTIveNGLEMPTNPETGASLGFAFIEFSSDEEATAAIVKANGYKLDK 77
                555555555421123333445566666666666666666666666666666643 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (694 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       119  (0.0290102); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                        21  (0.00511945); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.48u 0.16s 00:00:00.64 Elapsed: 00:00:03.02
# Mc/sec: 303.31
//
Query:       MMETSP1137-20121227|6212_1  [L=330]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (330 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       131  (0.0319356); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.17s 00:00:00.43 Elapsed: 00:00:00.44
# Mc/sec: 989.92
//
Query:       MMETSP1137-20121227|6213_1  [L=161]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.09    8.2   6.5      0.091    8.2   4.5    1.0  1  TIGR02169 SMC_prok_A: chromosome segregation protein SMC
       0.21    7.0  10.8       0.19    7.1   7.5    1.0  1  TIGR02168 SMC_prok_B: chromosome segregation protein SMC


Domain annotation for each model (and alignments):
>> TIGR02169  SMC_prok_A: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   4.5   4.4e-05     0.091     425     508 ..      12      95 ..       1     134 [. 0.57

  Alignments for each domain:
  == domain 1    score: 8.2 bits;  conditional E-value: 4.4e-05
   TIGR02169 425 elkaelerieekiaeleeeleelaeeikkaeqkleqlkedlekaekelrklkeeleklekelselerelaeleaqakaseeesr 508
                  +  + e+ e+++a  e++l + +++ ++ eq l++ +   ++a+++  +++e  ++ e+e+ el+++l+++ea ++ +e ++r
  MMETSP1137-20121227|6213_1  12 AAASAAEQRENALAMREAALASREAACAAREQALQHRQWACDEADERRAAREEMRAATEREILELHKKLDAAEAARRNAEMQVR 95 
                 233333333333333344444445555555555555555555555555555555555666666666666666666665555443 PP

>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   7.5   9.4e-05      0.19     339     420 ..      10      91 ..       1     149 [. 0.45

  Alignments for each domain:
  == domain 1    score: 7.1 bits;  conditional E-value: 9.4e-05
   TIGR02168 339 laeleeeleelkeelesleaeleeaeaeleelesrleeleeeleelrsevaeleeqlaslnaelerleaeleqleerrerlk 420
                 +a+ +   e+ ++ l+  ea+l+++ea+ ++ e++l+  + + +e+ ++ a+ ee  a+++ e+ +l ++l ++e+ r++++
  MMETSP1137-20121227|6213_1  10 AAAAASAAEQRENALAMREAALASREAACAAREQALQHRQWACDEADERRAAREEMRAATEREILELHKKLDAAEAARRNAE 91 
                 2222222222222222222222222222222222222222222222222222222222222222222222222222222211 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (161 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       294  (0.0716724); expected 82.0 (0.02)
Passed bias filter:                      130  (0.0316919); expected 82.0 (0.02)
Passed Vit filter:                        19  (0.00463189); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.25u 0.16s 00:00:00.41 Elapsed: 00:00:00.47
# Mc/sec: 452.13
//
Query:       MMETSP1137-20121227|6214_1  [L=385]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (385 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        58  (0.0141394); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.11s 00:00:00.39 Elapsed: 00:00:00.39
# Mc/sec: 1302.97
//
Query:       MMETSP1137-20121227|6215_1  [L=355]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (355 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       134  (0.032667); expected 82.0 (0.02)
Passed bias filter:                      103  (0.0251097); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.18s 00:00:00.47 Elapsed: 00:00:00.40
# Mc/sec: 1171.40
//
Query:       MMETSP1137-20121227|6216_1  [L=134]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (134 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        68  (0.0165773); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.14s 00:00:00.30 Elapsed: 00:00:00.30
# Mc/sec: 589.55
//
Query:       MMETSP1137-20121227|6217_1  [L=757]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (757 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        91  (0.0221843); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.47u 0.14s 00:00:00.61 Elapsed: 00:00:00.56
# Mc/sec: 1752.91
//
Query:       MMETSP1137-20121227|6219_1  [L=346]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (346 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       325  (0.0792296); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.16s 00:00:00.46 Elapsed: 00:00:00.42
# Mc/sec: 1087.34
//
Query:       MMETSP1137-20121227|6220_1  [L=55]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        35  (0.00853242); expected 82.0 (0.02)
Passed bias filter:                       31  (0.00755729); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.12s 00:00:00.24 Elapsed: 00:00:00.23
# Mc/sec: 315.63
//
Query:       MMETSP1137-20121227|6221_1  [L=178]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (178 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       193  (0.0470502); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.17s 00:00:00.37 Elapsed: 00:00:00.26
# Mc/sec: 903.62
//
Query:       MMETSP1137-20121227|6222_1  [L=156]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (156 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        59  (0.0143832); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.14s 00:00:00.29 Elapsed: 00:00:00.28
# Mc/sec: 710.01
//
Query:       MMETSP1137-20121227|6223_1  [L=413]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (413 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        64  (0.0156021); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.12s 00:00:00.41 Elapsed: 00:00:00.41
# Mc/sec: 1329.55
//
Query:       MMETSP1137-20121227|6225_1  [L=233]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (233 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        58  (0.0141394); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.14s 00:00:00.32 Elapsed: 00:00:00.31
# Mc/sec: 992.05
//
Query:       MMETSP1137-20121227|6226_1  [L=298]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (298 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       107  (0.0260848); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.18s 00:00:00.42 Elapsed: 00:00:00.30
# Mc/sec: 1311.09
//
Query:       MMETSP1137-20121227|6227_1  [L=94]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (94 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        40  (0.00975134); expected 82.0 (0.02)
Passed bias filter:                       36  (0.00877621); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.14s 00:00:00.27 Elapsed: 00:00:00.26
# Mc/sec: 477.19
//
Query:       MMETSP1137-20121227|6228_1  [L=108]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (108 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        46  (0.011214); expected 82.0 (0.02)
Passed bias filter:                       44  (0.0107265); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.11s 00:00:00.25 Elapsed: 00:00:00.26
# Mc/sec: 548.26
//
Query:       MMETSP1137-20121227|6229_1  [L=154]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.9e-09   34.6   0.0    3.4e-09   34.4   0.0    1.1  1  TIGR02349 DnaJ_bact: chaperone protein DnaJ


Domain annotation for each model (and alignments):
>> TIGR02349  DnaJ_bact: chaperone protein DnaJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.4   0.0   8.3e-13   3.4e-09       5      65 ..      27      91 ..      26     127 .. 0.78

  Alignments for each domain:
  == domain 1    score: 34.4 bits;  conditional E-value: 8.3e-13
   TIGR02349  5 iLgvskdAseeeikkAYrklakkyHPDrnkg....ekeaeekfkeineAyevLsdeekraqYDqf 65
                 Lgv+  As++e+kkA+rk+ ++ HPDr +g     ++a+e +  ++ Aye L   +  a+  ++
  MMETSP1137-20121227|6229_1 27 ALGVEIGASAAEVKKAHRKKMMELHPDRFAGdeegAAKAQEELIAVQSAYETLGGGQGTASGSRY 91
                69**************************98844445678888999*******9877666554444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (154 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        94  (0.0229157); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.17u 0.17s 00:00:00.34 Elapsed: 00:00:00.35
# Mc/sec: 580.75
//
Query:       MMETSP1137-20121227|6230_1  [L=161]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.1e-06   25.0   0.5    1.8e-06   24.3   0.4    1.3  1  TIGR01394 TypA_BipA: GTP-binding protein TypA/BipA
    4.4e-06   22.9   0.0    5.9e-06   22.5   0.0    1.1  1  TIGR00490 aEF-2: translation elongation factor aEF-2
     0.0012   16.5   0.1     0.0027   15.3   0.1    1.5  1  TIGR00231 small_GTP: small GTP-binding protein domain
     0.0022   14.2   0.1     0.0029   13.8   0.1    1.1  1  TIGR01393 lepA: GTP-binding protein LepA
  ------ inclusion threshold ------
       0.01   12.9   0.1      0.014   12.4   0.1    1.2  1  TIGR03680 eif2g_arch: translation initiation factor 2, gamma subunit
      0.058   10.4   2.3        0.1    9.6   0.0    1.9  2  TIGR01526 nadR_NMN_Atrans: nicotinamide-nucleotide adenylyltransferase


Domain annotation for each model (and alignments):
>> TIGR01394  TypA_BipA: GTP-binding protein TypA/BipA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.3   0.4   2.6e-09   1.8e-06       1      32 [.     121     152 ..     121     156 .. 0.93

  Alignments for each domain:
  == domain 1    score: 24.3 bits;  conditional E-value: 2.6e-09
   TIGR01394   1 irniaiiahvDhGkttlvDklLkqsgvlreke 32 
                 +rnia++    hGkttlvD+l+  +++++ ++
  MMETSP1137-20121227|6230_1 121 VRNIAVVGDLHHGKTTLVDNLVASTHTFHTAQ 152
                 6***************************9876 PP

>> TIGR00490  aEF-2: translation elongation factor aEF-2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.5   0.0   8.7e-09   5.9e-06      10      43 ..     112     145 ..     104     152 .. 0.90

  Alignments for each domain:
  == domain 1    score: 22.5 bits;  conditional E-value: 8.7e-09
   TIGR00490  10 kelmekpefirnigivahidhgkttlsdnllaga 43 
                   lm  p+ +rni +v  + hgkttl dnl+a +
  MMETSP1137-20121227|6230_1 112 CSLMAYPQLVRNIAVVGDLHHGKTTLVDNLVAST 145
                 579****************************975 PP

>> TIGR00231  small_GTP: small GTP-binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.1     4e-06    0.0027       4      33 ..     122     151 ..     121     160 .. 0.80

  Alignments for each domain:
  == domain 1    score: 15.3 bits;  conditional E-value: 4e-06
   TIGR00231   4 ikivivGhvdvGKstLlnsllknkisites 33 
                 ++i++vG+  +GK+tL ++l   +   + +
  MMETSP1137-20121227|6230_1 122 RNIAVVGDLHHGKTTLVDNLVASTHTFHTA 151
                 58*****************98776555555 PP

>> TIGR01393  lepA: GTP-binding protein LepA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.1   4.3e-06    0.0029       3      34 ..     121     152 ..     119     157 .. 0.89

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 4.3e-06
   TIGR01393   3 irnfsiiahidhGkstladrllektkavsere 34 
                 +rn++++  + hGk+tl+d l+ +t++ ++ +
  MMETSP1137-20121227|6230_1 121 VRNIAVVGDLHHGKTTLVDNLVASTHTFHTAQ 152
                 8************************9987665 PP

>> TIGR03680  eif2g_arch: translation initiation factor 2, gamma subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.1     2e-05     0.014       6      40 ..     122     156 ..     116     161 .] 0.80

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 2e-05
   TIGR03680   6 vniglvGhvDhGkttlvkaltGvwtdthseelkrg 40 
                  ni++vG   hGkttlv  l       h  + + g
  MMETSP1137-20121227|6230_1 122 RNIAVVGDLHHGKTTLVDNLVASTHTFHTAQSRVG 156
                 49*****************9987777776666655 PP

>> TIGR01526  nadR_NMN_Atrans: nicotinamide-nucleotide adenylyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.7     0.089        61     215     287 ..      27     112 ..       5     120 .. 0.50
   2 ?    9.6   0.0   0.00015       0.1     158     188 ..     117     147 ..     109     154 .. 0.86

  Alignments for each domain:
  == domain 1    score: 0.5 bits;  conditional E-value: 0.089
   TIGR01526 215 akivlGqadaedaavrsad..kvvfi.DtD..aittqvfaklyegre.....ePllk...kliaeerfDlvlllkpntewvdDglR 287
                 ++  +G     da++++ad  +vv+  D    + + +v+ +  e        +P+ +   + i+ + +D+v    p+t++  D + 
  MMETSP1137-20121227|6230_1  27 EQEERGMLANGDAEMEEADdtRVVLHeDKKyyPTAMEVYGEEVETTVqeedtQPITQpivAPIKPKDYDIVEKKMPQTKYTKDFMC 112
                 33334444444444444433333332133311334456666555543445554444411145777888888888888888888665 PP

  == domain 2    score: 9.6 bits;  conditional E-value: 0.00015
   TIGR01526 158 rpfFvktvailGgestGkstLvrklaeklnt 188
                  p  v+ +a++G    Gk+tLv +l ++ +t
  MMETSP1137-20121227|6230_1 117 YPQLVRNIAVVGDLHHGKTTLVDNLVASTHT 147
                 6889*******************99888766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (161 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       248  (0.0604583); expected 82.0 (0.02)
Passed bias filter:                      194  (0.047294); expected 82.0 (0.02)
Passed Vit filter:                        40  (0.00975134); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.25u 0.15s 00:00:00.40 Elapsed: 00:00:00.35
# Mc/sec: 607.15
//
Query:       MMETSP1137-20121227|6231_1  [L=103]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.017   12.0   1.9      0.018   11.9   1.3    1.0  1  TIGR00712 glpT: glycerol-3-phosphate transporter


Domain annotation for each model (and alignments):
>> TIGR00712  glpT: glycerol-3-phosphate transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   1.3   4.5e-06     0.018     349     403 ..      26      81 ..       5      91 .. 0.80

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 4.5e-06
   TIGR00712 349 vdlillivigfliygpvmliglhalelapkkaa.gtaagltglfgylggsvaasai 403
                   +i++ ++gfli  p  ++g+ a+      a     ag++glf  l  ++aa+a 
  MMETSP1137-20121227|6231_1  26 LHVIAMATVGFLIATPDSVLGIGAIVQGVLTAKvVDFAGWSGLFFALSAAMAATAA 81 
                 6789******************9997666555414579*********999998875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (103 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       184  (0.0448562); expected 82.0 (0.02)
Passed bias filter:                      114  (0.0277913); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.14u 0.13s 00:00:00.27 Elapsed: 00:00:00.28
# Mc/sec: 468.79
//
Query:       MMETSP1137-20121227|6232_1  [L=100]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (100 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        37  (0.00901999); expected 82.0 (0.02)
Passed bias filter:                       36  (0.00877621); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.17s 00:00:00.33 Elapsed: 00:00:00.54
# Mc/sec: 244.42
//
Query:       MMETSP1137-20121227|6233_1  [L=180]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (180 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        90  (0.0219405); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.18s 00:00:00.37 Elapsed: 00:00:00.37
# Mc/sec: 642.11
//
Query:       MMETSP1137-20121227|6234_1  [L=171]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (171 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        65  (0.0158459); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.11s 00:00:00.28 Elapsed: 00:00:00.46
# Mc/sec: 490.66
//
Query:       MMETSP1137-20121227|6235_1  [L=848]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.012   12.5   0.0          2    5.2   0.0    2.5  2  TIGR03866 PQQ_ABC_repeats: PQQ-dependent catabolism-associated beta-propeller protein
      0.028   12.7   0.0      0.058   11.7   0.0    1.5  1  TIGR02267 TIGR02267: Myxococcus xanthus paralogous family TIGR02267


Domain annotation for each model (and alignments):
>> TIGR03866  PQQ_ABC_repeats: PQQ-dependent catabolism-associated beta-propeller protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   0.0    0.0016       3.4      29     114 ..      45     130 ..      37     136 .. 0.75
   2 ?    5.2   0.0   0.00099         2      50      82 ..     196     228 ..     145     261 .. 0.52

  Alignments for each domain:
  == domain 1    score: 4.5 bits;  conditional E-value: 0.0016
   TIGR03866  29 etlevvktlkvGerP.rGitlskdgkllyvcasdsdavqvldaeteevlkelpsGedPelfvlepdgkllyianeddalvtvvdiek 114
                 +t ++vk ++v ++P r  ++    k+ +++ sd+ +++v + +t e +k + +  d  + +     + l ++  dd ++ + d +k
  MMETSP1137-20121227|6235_1  45 NTQALVKSFEVSDQPvRAGKFVA-RKQWILVGSDDMQIRVYNYNTMEKVKVFEAHSDYIRCIAVHPSQPLVLSSSDDMTIRLWDWDK 130
                 56677778888877744334444.444555679999******************999876655555678889999999988888765 PP

  == domain 2    score: 5.2 bits;  conditional E-value: 0.00099
   TIGR03866  50 kdgkllyvcasdsdavqvldaeteevlkelpsG 82 
                   ++  +v+ +d+++++v d +t++ +++l   
  MMETSP1137-20121227|6235_1 196 GGDRPYLVSGADDNSIKVWDYQTKQCVQTLEGH 228
                 334445566777777888888888777777654 PP

>> TIGR02267  TIGR02267: Myxococcus xanthus paralogous family TIGR02267
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   2.8e-05     0.058      18      71 ..     454     509 ..     432     545 .. 0.82

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 2.8e-05
   TIGR02267  18 lreGeplvltdevralllrsarevaiseadvtaalas..dvsalallkeisrrire 71 
                  + Ge + l  e   +llr  reva +  + + a+ +  + +a +l++eis+++r+
  MMETSP1137-20121227|6235_1 454 SESGELVCLVCEESIFLLRYKREVAAAAFERGDAVGEegVDDAFELVHEISEQVRT 509
                 467999****************************97522579**********9985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (848 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        92  (0.0224281); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.12s 00:00:00.64 Elapsed: 00:00:00.84
# Mc/sec: 1332.46
//
Query:       MMETSP1137-20121227|6237_1  [L=378]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (378 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        86  (0.0209654); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.12s 00:00:00.38 Elapsed: 00:00:00.57
# Mc/sec: 860.20
//
Query:       MMETSP1137-20121227|6238_1  [L=430]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.015   12.3   0.1      0.027   11.4   0.1    1.3  1  TIGR03557 F420_G6P_family: F420-dependent oxidoreductase, G6PDH family


Domain annotation for each model (and alignments):
>> TIGR03557  F420_G6P_family: F420-dependent oxidoreductase, G6PDH family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.1   6.5e-06     0.027     167     218 ..     287     337 ..     277     345 .. 0.89

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 6.5e-06
   TIGR03557 167 vaasGekavelaaelgDgliavepdaelveafreagggdkpvvgevkvcwde 218
                 ++asG+ a+    + +D+ ++ e+da+lv a++++   + pv +++ +cw++
  MMETSP1137-20121227|6238_1 287 ASASGPDATA-TQKASDNAMTNEVDADLVMAYNHQYVRALPVEAGTALCWSR 337
                 6889998875.56889**********************************85 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (430 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        57  (0.0138957); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.30u 0.16s 00:00:00.46 Elapsed: 00:00:00.32
# Mc/sec: 1773.60
//
Query:       MMETSP1137-20121227|6239_1  [L=142]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (142 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        89  (0.0216967); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.16s 00:00:00.34 Elapsed: 00:00:00.27
# Mc/sec: 694.16
//
Query:       MMETSP1137-20121227|6240_1  [L=221]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.034   11.4   0.0      0.076   10.3   0.0    1.6  1  TIGR02467 CbiE: precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE subunit


Domain annotation for each model (and alignments):
>> TIGR02467  CbiE: precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   1.8e-05     0.076     100     122 ..     197     219 ..     186     221 .] 0.86

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 1.8e-05
   TIGR02467 100 giSSiqlafarlglpwqdavliS 122
                  +SS+qlaf++lg+p+ +a  +S
  MMETSP1137-20121227|6240_1 197 DVSSMQLAFCQLGWPFVNAGGVS 219
                 69*************98886666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (221 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       169  (0.0411994); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.21u 0.11s 00:00:00.32 Elapsed: 00:00:00.39
# Mc/sec: 747.94
//
Query:       MMETSP1137-20121227|6242_1  [L=294]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   1.5e-130  434.7   5.3   1.7e-130  434.5   3.7    1.0  1  TIGR01973 NuoG: NADH dehydrogenase (quinone), G subunit
      3e-07   27.4   0.1    4.4e-07   26.9   0.1    1.2  1  TIGR02512 FeFe_hydrog_A: [FeFe] hydrogenase, group A


Domain annotation for each model (and alignments):
>> TIGR01973  NuoG: NADH dehydrogenase (quinone), G subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  434.5   3.7  8.1e-134  1.7e-130       1     233 [.      60     292 ..      60     294 .] 0.99

  Alignments for each domain:
  == domain 1    score: 434.5 bits;  conditional E-value: 8.1e-134
   TIGR01973   1 itvdgkelevekgttvlqaceklgieiprFCyhekLsiaGnCRmClVevekakkpvasCatpvtdgmkistksevvkkaregvmEflLiNHPlDCPiCdqGGeCdLQDqavmyGsdesrfeekkRtvenkdlgpliktemnRCiqCtRCvRfanevaGveelgvigrgenveigtyeeklleselSGNlidiCPvGaLtdkpyafkaRkwelkstesicvldsvGsnirvder 233
                 +++dg+++++e+g+++lqace++gi++prFC+he+Ls+aGnCRmClVe+ek++kpvasCa p + gmki+t+s +vkkaregvmEflL+NHPlDCPiCdqGGeCdLQDqa+ +Gsd+sr+ e kR+ve+k+lgpl+kt m+RCi+CtRCvRf++evaGv++lg++grg+ +eigty+e +l+se+SGN++d+CPvGaLt+kp af +R+wel+ t+si+ ld++G +irvd+ 
  MMETSP1137-20121227|6242_1  60 VIIDGNPVQIENGSSILQACESVGINVPRFCFHERLSVAGNCRMCLVEIEKSPKPVASCAYPTMPGMKIFTNSAMVKKAREGVMEFLLANHPLDCPICDQGGECDLQDQAMHFGSDRSRYVEAKRSVEDKNLGPLVKTVMTRCIHCTRCVRFSQEVAGVNMLGAVGRGNAMEIGTYVEAALNSEMSGNVVDLCPVGALTSKPNAFAYRSWELRMTNSIDALDPCGPAIRVDTT 292
                 68*************************************************************************************************************************************************************************************************************************************86 PP

>> TIGR02512  FeFe_hydrog_A: [FeFe] hydrogenase, group A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.9   0.1   2.2e-10   4.4e-07       2      97 ..     195     289 ..     194     293 .. 0.81

  Alignments for each domain:
  == domain 1    score: 26.9 bits;  conditional E-value: 2.2e-10
   TIGR02512   2 ividvskCilCerCvkaCekvqevkalkalneklktevatkleklldeseCisCGqCvlvCpvgaitek.dev.eevlkaladkkkvvvvqiAPavRv 97 
                 ++  +++Ci+C+rCv++ ++v+ v++l+a+ +++ +e+ t +e +l+++     G  v  Cpvga+t k ++   + ++   +++  ++  + Pa+Rv
  MMETSP1137-20121227|6242_1 195 VKTVMTRCIHCTRCVRFSQEVAGVNMLGAVGRGNAMEIGTYVEAALNSE---MSGNVVDLCPVGALTSKpNAFaYRSWELRMTNSIDALDPCGPAIRV 289
                 566799***************************************9965...57*************9954431345555555556666777788887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (294 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       109  (0.0265724); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.24u 0.12s 00:00:00.36 Elapsed: 00:00:00.53
# Mc/sec: 732.17
//
Query:       MMETSP1137-20121227|6244_1  [L=252]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (252 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        99  (0.0241346); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.11s 00:00:00.34 Elapsed: 00:00:00.70
# Mc/sec: 475.16
//
Query:       MMETSP1137-20121227|6245_1  [L=248]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.1e-10   38.0   0.0    2.8e-10   37.6   0.0    1.2  1  TIGR03516 ppisom_GldI: peptidyl-prolyl isomerase, gliding motility-associated


Domain annotation for each model (and alignments):
>> TIGR03516  ppisom_GldI: peptidyl-prolyl isomerase, gliding motility-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.6   0.0   6.9e-14   2.8e-10      74     175 ..     140     239 ..      96     241 .. 0.84

  Alignments for each domain:
  == domain 1    score: 37.6 bits;  conditional E-value: 6.9e-14
   TIGR03516  74 aykkkdttetktpetgDlvsfeyeikaldgdviyskeelgpkt.ykvdqedlisGlrdglklmkegeevtfllPsykayGyyGdedkigsnlpikstvtllni 175
                  y++ +++ + +p     v+ +ye k  dg+v  s    g  t +kv  e++i+G ++gl+lm+eg ++ + +P++ ayG yG +  i  n +++ +v ll++
  MMETSP1137-20121227|6245_1 140 VYTQLSEGTGAMPTASQTVKVHYEGKLADGTVFDSSIRRGEPTeFKV--EQVIQGWQEGLQLMREGGKARLTIPASLAYGSYGSR-TIPGNAALQFEVELLEV 239
                 68899999***********************9999988886651555..569*******************************86.6999********99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (248 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        89  (0.0216967); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.22u 0.11s 00:00:00.33 Elapsed: 00:00:00.33
# Mc/sec: 991.92
//
Query:       MMETSP1137-20121227|6246_1  [L=575]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (575 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        49  (0.0119454); expected 82.0 (0.02)
Passed bias filter:                       40  (0.00975134); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.14s 00:00:00.48 Elapsed: 00:00:00.47
# Mc/sec: 1614.76
//
Query:       MMETSP1137-20121227|6247_1  [L=165]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (165 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        42  (0.0102389); expected 82.0 (0.02)
Passed bias filter:                       35  (0.00853242); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.16s 00:00:00.33 Elapsed: 00:00:00.28
# Mc/sec: 777.79
//
Query:       MMETSP1137-20121227|6248_1  [L=366]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (366 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        53  (0.0129205); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.13s 00:00:00.39 Elapsed: 00:00:00.39
# Mc/sec: 1238.67
//
Query:       MMETSP1137-20121227|6251_1  [L=226]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (226 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       115  (0.0280351); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.14s 00:00:00.35 Elapsed: 00:00:00.34
# Mc/sec: 877.34
//
Query:       MMETSP1137-20121227|6252_1  [L=241]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (241 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        73  (0.0177962); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.17s 00:00:00.38 Elapsed: 00:00:00.63
# Mc/sec: 504.91
//
Query:       MMETSP1137-20121227|6254_1  [L=81]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (81 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        38  (0.00926377); expected 82.0 (0.02)
Passed bias filter:                       34  (0.00828864); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.17s 00:00:00.32 Elapsed: 00:00:00.27
# Mc/sec: 395.97
//
Query:       MMETSP1137-20121227|6256_1  [L=1049]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1049 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       240  (0.058508); expected 82.0 (0.02)
Passed bias filter:                       99  (0.0241346); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.68u 0.18s 00:00:00.86 Elapsed: 00:00:00.86
# Mc/sec: 1609.96
//
Query:       MMETSP1137-20121227|6257_1  [L=167]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.6e-13   46.8   0.1    6.5e-13   46.3   0.0    1.3  1  TIGR01622 SF-CC1: splicing factor, CC1-like family
    1.3e-11   41.5   0.0    1.5e-11   41.3   0.0    1.2  1  TIGR01642 U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor
    1.1e-08   32.5   0.1    1.3e-08   32.3   0.1    1.2  1  TIGR01628 PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family
    2.7e-08   30.8   0.0    3.6e-08   30.4   0.0    1.2  1  TIGR01645 half-pint: poly-U binding splicing factor, half-pint family
    2.9e-07   27.5   0.0    3.9e-07   27.0   0.0    1.2  1  TIGR01648 hnRNP-R-Q: hnRNP-R, Q splicing factor family
    4.5e-07   27.6   0.0    4.9e-07   27.4   0.0    1.1  1  TIGR01661 ELAV_HUD_SF: ELAV/HuD family splicing factor
    4.4e-06   24.4   0.0    5.5e-06   24.0   0.0    1.1  1  TIGR01659 sex-lethal: sex-lethal family splicing factor


Domain annotation for each model (and alignments):
>> TIGR01622  SF-CC1: splicing factor, CC1-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.3   0.0   1.1e-15   6.5e-13     216     285 ..      95     164 ..      67     167 .] 0.84

  Alignments for each domain:
  == domain 1    score: 46.3 bits;  conditional E-value: 1.1e-15
   TIGR01622 216 siadlkLYvGnlhfnitEqeLrqiFepFGeielvqlqkDpetGrskGyGFiqFsdaeeakeAleklNGle 285
                   + + L+v  + ++ tE +L++ Fe FG+i+ v+l  D +tG+ +Gy Fi++++    k A ++  G  
  MMETSP1137-20121227|6257_1  95 GDPYKTLFVSRISYETTEAKLKKEFEQFGPIKRVRLVFDTNTGKPRGYAFIEYEQERDMKTAYKQGDGKK 164
                 347889******************************************************9998877755 PP

>> TIGR01642  U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.3   0.0   2.6e-14   1.5e-11     282     363 ..      84     165 ..      55     167 .] 0.89

  Alignments for each domain:
  == domain 1    score: 41.3 bits;  conditional E-value: 2.6e-14
   TIGR01642 282 aveklvnsktvldsedklyignLPldlkddqvkeLLesFGdLkaFnliKdlatGlsKGyaFceykdssvtdlAiaaLnGikl 363
                 + + ++ sk   d  + l+++ + ++ ++ ++k   e+FG++k   l+ d++tG+ +GyaF+ey++  + + A +  +G+k+
  MMETSP1137-20121227|6257_1  84 SYDPSSDSKIKGDPYKTLFVSRISYETTEAKLKKEFEQFGPIKRVRLVFDTNTGKPRGYAFIEYEQERDMKTAYKQGDGKKI 165
                 445568999999999*******************************************************999999999876 PP

>> TIGR01628  PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.3   0.1   2.2e-11   1.3e-08     176     245 ..      96     166 ..      54     167 .] 0.66

  Alignments for each domain:
  == domain 1    score: 32.3 bits;  conditional E-value: 2.2e-11
   TIGR01628 176 kkftNlYvKnlddsvtedklrelFakfGeitSai.vkkdeknrkrgfafvnyekaedAkkAveelngkkit 245
                 + +  l+v  +  + te kl++ F +fG i  +  v + + ++ rg+af++ye++ d k A  + +gkki+
  MMETSP1137-20121227|6257_1  96 DPYKTLFVSRISYETTEAKLKKEFEQFGPIKRVRlVFDTNTGKPRGYAFIEYEQERDMKTAYKQGDGKKID 166
                 44566666677777777777777777777766641344455666777777777777777777776666664 PP

>> TIGR01645  half-pint: poly-U binding splicing factor, half-pint family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.4   0.0   6.1e-11   3.6e-08     110     158 ..     103     152 ..      98     167 .] 0.82

  Alignments for each domain:
  == domain 1    score: 30.4 bits;  conditional E-value: 6.1e-11
   TIGR01645 110 vGsisfelkedtlrrafdPfGPiksinmsWdpvtqkhkgfafve.evPea 158
                 v  is+e  e  l++ f+ fGPik + + +d+ t+k +g+af+e e    
  MMETSP1137-20121227|6257_1 103 VSRISYETTEAKLKKEFEQFGPIKRVRLVFDTNTGKPRGYAFIEyEQERD 152
                 77899999999999999999999999999999999999999999665444 PP

>> TIGR01648  hnRNP-R-Q: hnRNP-R, Q splicing factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.0   0.0   6.7e-10   3.9e-07      61     122 ..     101     163 ..      83     167 .] 0.83

  Alignments for each domain:
  == domain 1    score: 27.0 bits;  conditional E-value: 6.7e-10
   TIGR01648  61 vfvGkiPrdlyedelvPlfekvGkiyelrlmmd.ldGknrGyafvtfcnkeeakeavkelnny 122
                 +fv +i  +  e  l   fe+ G+i  +rl+ d   Gk rGyaf+ + + ++ k a k+ +  
  MMETSP1137-20121227|6257_1 101 LFVSRISYETTEAKLKKEFEQFGPIKRVRLVFDtNTGKPRGYAFIEYEQERDMKTAYKQGDGK 163
                 688888889999999999999999999999999667999999999999999999998887654 PP

>> TIGR01661  ELAV_HUD_SF: ELAV/HuD family splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.4   0.0   8.4e-10   4.9e-07      81     154 ..      87     163 ..      63     167 .] 0.72

  Alignments for each domain:
  == domain 1    score: 27.4 bits;  conditional E-value: 8.4e-10
   TIGR01661  81 rPssdsikg...anlyvsGlPktmtqkeleslfspfGkiitsrilsdnvtdlskGvGfirfdkreeadraikalnGt 154
                   s+ +ikg     l+vs +  + t  +l + f++fG i   r++ d  t+  +G  fi +++  + ++a k+ +G+
  MMETSP1137-20121227|6257_1  87 PSSDSKIKGdpyKTLFVSRISYETTEAKLKKEFEQFGPIKRVRLVFDTNTGKPRGYAFIEYEQERDMKTAYKQGDGK 163
                 34444577733336778888888888888888888888888888888888888888888887777777777776665 PP

>> TIGR01659  sex-lethal: sex-lethal family splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.0   0.0   9.4e-09   5.5e-06     109     166 ..     100     157 ..      78     165 .. 0.56

  Alignments for each domain:
  == domain 1    score: 24.0 bits;  conditional E-value: 9.4e-09
   TIGR01659 109 nlivnylpqdmtdrelyalfrtigpintcrimrdyktgysfgyafvdfaseadsqrai 166
                  l v  +  + t+ +l   f   gpi   r++ d  tg   gyaf+++  e d + a 
  MMETSP1137-20121227|6257_1 100 TLFVSRISYETTEAKLKKEFEQFGPIKRVRLVFDTNTGKPRGYAFIEYEQERDMKTAY 157
                 3444444444555555555555555555555555555555555555555555555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (167 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       134  (0.032667); expected 82.0 (0.02)
Passed bias filter:                      115  (0.0280351); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.22u 0.19s 00:00:00.41 Elapsed: 00:00:00.27
# Mc/sec: 816.38
//
Query:       MMETSP1137-20121227|6258_1  [L=164]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (164 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        76  (0.0185275); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.15s 00:00:00.31 Elapsed: 00:00:00.31
# Mc/sec: 698.26
//
Query:       MMETSP1137-20121227|6259_1  [L=125]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0025   14.7   0.0     0.0027   14.6   0.0    1.0  1  TIGR03594 GTPase_EngA: ribosome-associated GTPase EngA
     0.0044   14.7   0.0     0.0054   14.4   0.0    1.2  1  TIGR00231 small_GTP: small GTP-binding protein domain


Domain annotation for each model (and alignments):
>> TIGR03594  GTPase_EngA: ribosome-associated GTPase EngA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.0   1.3e-06    0.0027     289     344 ..      19      70 ..       7     104 .. 0.82

  Alignments for each domain:
  == domain 1    score: 14.6 bits;  conditional E-value: 1.3e-06
   TIGR03594 289 lvivvNKwDlvkdekeleelkkeleeklkflkfapivfiSAltgkgveklleaike 344
                 +++v NK+Dl     +++++k + ++ ++  + +   f+SA+tg  v +++++i +
  MMETSP1137-20121227|6259_1  19 VILVGNKTDLN----HMRAVKVDKHNMFAEENDMGSAFVSAKTGDSVANVFHKIAA 70 
                 79999*****9....889999999999*************************9975 PP

>> TIGR00231  small_GTP: small GTP-binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.0   2.6e-06    0.0054     114     162 ..      18      68 ..       1      70 [. 0.80

  Alignments for each domain:
  == domain 1    score: 14.4 bits;  conditional E-value: 2.6e-06
   TIGR00231 114 piilvvnKiDlkd..dlktkvkslfaklnaepiielsaetgknidklfklv 162
                  +ilv+nK Dl++  ++k +    fa+ n      +sa+tg+++ ++f  +
  MMETSP1137-20121227|6259_1  18 RVILVGNKTDLNHmrAVKVDKHNMFAEENDMGSAFVSAKTGDSVANVFHKI 68 
                 379************999999999999999889999999999999988765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (125 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       143  (0.034861); expected 82.0 (0.02)
Passed bias filter:                      121  (0.0294978); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.16u 0.16s 00:00:00.32 Elapsed: 00:00:00.51
# Mc/sec: 323.50
//
Query:       MMETSP1137-20121227|6260_1  [L=222]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.013   11.1  24.3      0.016   10.7  16.9    1.0  1  TIGR02168 SMC_prok_B: chromosome segregation protein SMC
      0.045    9.2  21.4      0.052    9.0  14.8    1.0  1  TIGR02169 SMC_prok_A: chromosome segregation protein SMC
       0.16    9.9  17.0       0.33    8.9  11.8    1.5  1  TIGR02894 DNA_bind_RsfA: transcription factor, RsfA family
       0.28    8.1   5.9       0.39    7.6   4.1    1.1  1  TIGR00588 ogg: 8-oxoguanine DNA-glycosylase (ogg)
        1.4    5.7  20.6        1.9    5.2  14.3    1.2  1  TIGR00237 xseA: exodeoxyribonuclease VII, large subunit
        2.3    4.6  15.4          4    3.8  10.7    1.4  1  TIGR02231 TIGR02231: conserved hypothetical protein


Domain annotation for each model (and alignments):
>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7  16.9   2.4e-05     0.016     279     397 ..       6     125 ..       2     154 .. 0.35

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 2.4e-05
   TIGR02168 279 leeeleelqkelqe.lkaeisrleqeieilkerleqlekeleeleeqleeleskkeeleeelaeleeeleelkeelesleaeleeaeaeleelesrleeleeeleelrsevaeleeqlas 397
                 l++++ e+q++l + ++++++ +++++ ++++ le+ ++++ ++e++l+ l+++ e l+++l + e ++eel+ ele+l  + + +  e++ l ++le++++ l + + ++++ + q+++
  MMETSP1137-20121227|6260_1   6 LRKQMVEVQQQLAQwTSQQKQHIDSTVLQAQRTLENDKENQRQAEQKLQLLKADDEALQNRLRAEERKVEELRVELERLHTQEKLLPPEQQRLAKSLEQQRQLLAQRELAYQQCQLQKET 125
                 222222222222220122222233333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333322 PP

>> TIGR02169  SMC_prok_A: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0  14.8   7.6e-05     0.052     679     796 ..       5     123 ..       1     152 [. 0.43

  Alignments for each domain:
  == domain 1    score: 9.0 bits;  conditional E-value: 7.6e-05
   TIGR02169 679 rlrerleeLereleslq.selrriekrldelssklsdaekkieeiekeleqleeeeeklkerleeleeklseleeeleekkeelkeleaeieeleeklaklkealedleaelseekiee 796
                 +lr+++ e +++l++ + +++++i++ + ++++ l++ +++ +++e++l+ l+++ e+l++rl + e+k++el  ele  +++ k l  e ++l ++l++ ++ l++ e  +++ ++++
  MMETSP1137-20121227|6260_1   5 ELRKQMVEVQQQLAQWTsQQKQHIDSTVLQAQRTLENDKENQRQAEQKLQLLKADDEALQNRLRAEERKVEELRVELERLHTQEKLLPPEQQRLAKSLEQQRQLLAQRELAYQQCQLQK 123
                 33344444444443332123334444444444444444444444444444444444444444444444444444444444444444444444444444444444444333333333333 PP

>> TIGR02894  DNA_bind_RsfA: transcription factor, RsfA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9  11.8   0.00049      0.33      52     157 ..       3     111 ..       2     115 .. 0.73

  Alignments for each domain:
  == domain 1    score: 8.9 bits;  conditional E-value: 0.00049
   TIGR02894  52 naevrkkyeeaielakkqrkerkra..aesltledviefL.qnlketleeaeklrkekeklkeeleslqkrneeLekeleklkkkksvieedyetlikimdrarklavv 157
                 n e+rk+  e  ++  +   ++k+    + l  ++ +e   +n+++++++ + l+ ++e l+++l++ ++++eeL+ ele+l+++++++  + + l k ++++r+l  +
  MMETSP1137-20121227|6260_1   3 NEELRKQMVEVQQQLAQWTSQQKQHidSTVLQAQRTLENDkENQRQAEQKLQLLKADDEALQNRLRAEERKVEELRVELERLHTQEKLLPPEQQRLAKSLEQQRQLLAQ 111
                 56677776554443333333333331234555566665541455566677788999*************************************************9765 PP

>> TIGR00588  ogg: 8-oxoguanine DNA-glycosylase (ogg)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   4.1   0.00057      0.39      13     109 ..       4     102 ..       2     115 .. 0.68

  Alignments for each domain:
  == domain 1    score: 7.6 bits;  conditional E-value: 0.00057
   TIGR00588  13 selrLdlvlrsGqsfrwrweeseaafsellvladqe....vvvltqteeellevvargDkstqdeLktklekyfqLdvsleqlyshwasvDkafqkvaqkf 109
                  elr ++v    q  +w+  +++++  ++ vl+ q         +++ e+ l++ +  D++ q+ L+++ +k+ +L v+le l+++  +   + q++a++ 
  MMETSP1137-20121227|6260_1   4 EELRKQMVEVQQQLAQWT-SQQKQHIDST-VLQAQRtlenDKENQRQAEQKLQLLKADDEALQNRLRAEERKVEELRVELERLHTQEKLLPPEQQRLAKSL 102
                 589999999999******.5666666554.55555323321222333446677788889999*********************998555444444444443 PP

>> TIGR00237  xseA: exodeoxyribonuclease VII, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2  14.3    0.0027       1.9     263     377 ..       5     122 ..       2     156 .. 0.71

  Alignments for each domain:
  == domain 1    score: 5.2 bits;  conditional E-value: 0.0027
   TIGR00237 263 rlksaevrleraldtllaqkkarleqlaaslkrqspknklaa.keakleklekrlqaalekqlertrqkktrltkrleqlnpspklk.raqtrl.eqlerrlnkllnaqlkekrekfg 377
                  l+++ v +++ l ++ +q+k++++  + + +r   + k ++ ++ +  +l k    al+++l   ++k + l + le+l++++kl    q+rl + le++ + l +++l  ++ +++
  MMETSP1137-20121227|6260_1   5 ELRKQMVEVQQQLAQWTSQQKQHIDSTVLQAQRTLENDKENQrQAEQKLQLLKADDEALQNRLRAEERKVEELRVELERLHTQEKLLpPEQQRLaKSLEQQRQLLAQRELAYQQCQLQ 122
                 57888899999999**********999988887766555444044445567777888999************************9872345554133444444445555555555554 PP

>> TIGR02231  TIGR02231: conserved hypothetical protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8  10.7    0.0058         4      60     205 ..      19     163 ..       3     166 .. 0.81

  Alignments for each domain:
  == domain 1    score: 3.8 bits;  conditional E-value: 0.0058
   TIGR02231  60 tlreltseadseriaelrkkireleaeledledradalkklkkfledirekltepikdlkreeadlkelkklldfaeseieklleedreveakirelekklselenelralltekeqrskkvlvtleatedaeaelevtYqvrdas 205
                 ++ +++++  +  + + ++++++ +++++++e++ + lk+    l++   + + ++++l+ e + l+  +kll   ++ ++k le++r++ a +rel  +  +l++e r    +k+ +  + l++le +  ++ +l+++++  da+
  MMETSP1137-20121227|6260_1  19 QWTSQQKQHIDSTVLQAQRTLENDKENQRQAEQKLQLLKADDEALQNRLRAEERKVEELRVELERLHTQEKLLPPEQQRLAKSLEQQRQLLA-QRELAYQQCQLQKETRLSELGKGCSTYQRLLSLEFERMGDERLRLVFTNLDAR 163
                 4555566666667777788888888888888888888888777777666666666666888999999999*****************99975.799*********99998888999999999999999999999999999988885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (222 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       446  (0.108727); expected 82.0 (0.02)
Passed bias filter:                      194  (0.047294); expected 82.0 (0.02)
Passed Vit filter:                        33  (0.00804486); expected 4.1 (0.001)
Passed Fwd filter:                        11  (0.00268162); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.37u 0.15s 00:00:00.52 Elapsed: 00:00:00.54
# Mc/sec: 542.62
//
Query:       MMETSP1137-20121227|6262_1  [L=117]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (117 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        98  (0.0238908); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.12s 00:00:00.28 Elapsed: 00:00:00.31
# Mc/sec: 498.15
//
Query:       MMETSP1137-20121227|6263_1  [L=42]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (42 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        13  (0.00316919); expected 82.0 (0.02)
Passed bias filter:                       13  (0.00316919); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.16s 00:00:00.26 Elapsed: 00:00:00.34
# Mc/sec: 163.05
//
Query:       MMETSP1137-20121227|6264_1  [L=302]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        2.4    3.4  14.9        3.1    3.1  10.3    1.0  1  TIGR00927 2A1904: K+-dependent Na+/Ca+ exchanger


Domain annotation for each model (and alignments):
>> TIGR00927  2A1904: K+-dependent Na+/Ca+ exchanger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1  10.3   0.00075       3.1     777     871 ..     180     273 ..     158     290 .. 0.62

  Alignments for each domain:
  == domain 1    score: 3.1 bits;  conditional E-value: 0.00075
   TIGR00927 777 ggeaeqegeseekaeeeseGeie...aerkgedegegeieakeaevkGeeeeeeveaeeeteaeGdedegeieaeeeGeekededegeieakeeveve 871
                   e+  +g ++ ++++ + Ge++   +e++ge+e+e eie      +G++ +  +   +e+e+eG+ d+ge +  ++ + ++de +g+ ++  +   +
  MMETSP1137-20121227|6264_1 180 SRERVPDGXGDVNGQNANMGEMPpsdSEEEGEEEEEDEIELAG---NGQKRTAGLMPPSESESEGESDDGESDGRSD-DDCGDECDGNGRGLGKDGDH 273
                 3444566777778888888888622245555555555555555...6777777888888888899888888876665.45777766665553333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (302 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        62  (0.0151146); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.24u 0.13s 00:00:00.37 Elapsed: 00:00:00.56
# Mc/sec: 711.80
//
Query:       MMETSP1137-20121227|6265_1  [L=456]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (456 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        38  (0.00926377); expected 82.0 (0.02)
Passed bias filter:                       30  (0.00731351); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.14s 00:00:00.43 Elapsed: 00:00:00.61
# Mc/sec: 986.67
//
Query:       MMETSP1137-20121227|6266_1  [L=258]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (258 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        86  (0.0209654); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.15s 00:00:00.35 Elapsed: 00:00:00.45
# Mc/sec: 756.74
//
Query:       MMETSP1137-20121227|6267_1  [L=336]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (336 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        67  (0.0163335); expected 82.0 (0.02)
Passed bias filter:                       42  (0.0102389); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.13s 00:00:00.38 Elapsed: 00:00:00.38
# Mc/sec: 1167.06
//
Query:       MMETSP1137-20121227|6268_1  [L=139]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (139 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        77  (0.0187713); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.15s 00:00:00.31 Elapsed: 00:00:00.36
# Mc/sec: 509.62
//
Query:       MMETSP1137-20121227|6269_1  [L=125]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (125 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       103  (0.0251097); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.14s 00:00:00.29 Elapsed: 00:00:00.28
# Mc/sec: 568.92
//
Query:       MMETSP1137-20121227|6270_1  [L=242]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (242 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       131  (0.0319356); expected 82.0 (0.02)
Passed bias filter:                      108  (0.0263286); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.15s 00:00:00.36 Elapsed: 00:00:00.35
# Mc/sec: 912.61
//
Query:       MMETSP1137-20121227|6271_1  [L=203]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (203 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       162  (0.0394929); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.13s 00:00:00.32 Elapsed: 00:00:00.67
# Mc/sec: 399.91
//
Query:       MMETSP1137-20121227|6272_1  [L=160]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (160 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       145  (0.0353486); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.16s 00:00:00.34 Elapsed: 00:00:00.41
# Mc/sec: 515.08
//
Query:       MMETSP1137-20121227|6273_1  [L=146]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (146 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        52  (0.0126767); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.15s 00:00:00.31 Elapsed: 00:00:00.44
# Mc/sec: 437.96
//
Query:       MMETSP1137-20121227|6274_1  [L=133]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (133 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        16  (0.00390054); expected 82.0 (0.02)
Passed bias filter:                       12  (0.0029254); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.13s 00:00:00.28 Elapsed: 00:00:00.28
# Mc/sec: 626.95
//
Query:       MMETSP1137-20121227|6275_1  [L=183]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (183 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        71  (0.0173086); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.16s 00:00:00.35 Elapsed: 00:00:00.69
# Mc/sec: 350.06
//
Query:       MMETSP1137-20121227|6276_1  [L=686]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      5e-45  150.8   0.1    7.9e-45  150.1   0.0    1.3  1  TIGR00607 rad52: recombination protein rad52


Domain annotation for each model (and alignments):
>> TIGR00607  rad52: recombination protein rad52
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  150.1   0.0   1.9e-48   7.9e-45       2     147 ..     165     312 ..     164     325 .. 0.92

  Alignments for each domain:
  == domain 1    score: 150.1 bits;  conditional E-value: 1.9e-48
   TIGR00607   2 iqkalrkklGpeyiskrvggGgskvayiegwkvielaneifGynGwsssiksvnvdfvdenk..gkfsvGvsaivrvtlkdGsyhedvGyGsvenlrskalalekakkeavtdalkralrsfGnalGnclydkdylrkidklkqaple 147
                 +q+ l+ +l    i +r ggG+ kv y+egw+vi+ a +ifG++Gwss+i +++ ++ +++k  +++svG sa +rv+lkdG++hedvG+Gs+ n++ +  a+e+a+keavtd+ kralr fG+alGn +ydk +++++      +++
  MMETSP1137-20121227|6276_1 165 VQRLLQTNLEAHEIMHREGGGAGKVPYMEGWRVIDKAQRIFGFDGWSSKILELRKEYEEQDKssKRWSVGYSASIRVELKDGTFHEDVGFGSTINEKDRGKAIENARKEAVTDGTKRALRLFGAALGNSVYDKLHVKEVRLAGARRPQ 312
                 79999****************************************************98877779************************************************************************99765555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (686 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       151  (0.0368113); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.15s 00:00:00.56 Elapsed: 00:00:00.66
# Mc/sec: 1371.89
//
Query:       MMETSP1137-20121227|6277_1  [L=137]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.098   11.5   2.6       0.12   11.3   1.7    1.3  1  TIGR03021 pilP_fam: type IV pilus biogenesis protein PilP


Domain annotation for each model (and alignments):
>> TIGR03021  pilP_fam: type IV pilus biogenesis protein PilP
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   1.7   2.9e-05      0.12       5      65 ..      16      78 ..      12     101 .. 0.78

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 2.9e-05
   TIGR03021  5 geLealqsetalleAklarakakkeleeaeekgs...naepgapftssvpsvaltqavptsssa 65
                 eL++ q++ al++A++  ak k+  +  ++  +   + +  a + ++vp+ ++ +a+p +++a
  MMETSP1137-20121227|6277_1 16 PELSEKQQQEALVKAQWLAAKRKESAQA-QRVRQrllEEGDSALPPRVVPAWPTRTATPAMPDA 78
                689999**********999998887553.44344477888888888899888888888874444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (137 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       101  (0.0246221); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.18u 0.18s 00:00:00.36 Elapsed: 00:00:00.40
# Mc/sec: 452.06
//
Query:       MMETSP1137-20121227|6278_1  [L=235]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0036   13.6   0.1     0.0046   13.2   0.1    1.1  1  TIGR01663 PNK-3'Pase: polynucleotide kinase 3'-phosphatase


Domain annotation for each model (and alignments):
>> TIGR01663  PNK-3'Pase: polynucleotide kinase 3'-phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   0.1   1.1e-06    0.0046     360     432 ..      32     112 ..       7     132 .. 0.75

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 1.1e-06
   TIGR01663 360 ldaspevvvavGlpGaGkstflkkf.lvsa........GykivnadtlGstqrcltackraldsGkrvvvdntnvdaasrkk 432
                  + + ++v++ G p aGks+ + +  + +a        G+  + a+  G   + l   kr l++G++vv+d+ n  aa r++
  MMETSP1137-20121227|6278_1  32 HSGAVQLVLLCGAPCAGKSETCLRIcFAPAkaagddcnGFERLSAEESGISLHVLRNGKR-LQRGQKVVIDDQNRSAARRRN 112
                 34557899***********98765415443233333337888888888988888888776.89**************99976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (235 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        91  (0.0221843); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.21u 0.13s 00:00:00.34 Elapsed: 00:00:00.34
# Mc/sec: 912.28
//
Query:       MMETSP1137-20121227|6279_1  [L=373]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (373 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        81  (0.0197465); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.15s 00:00:00.42 Elapsed: 00:00:00.40
# Mc/sec: 1230.80
//
Query:       MMETSP1137-20121227|6280_1  [L=78]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (78 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        39  (0.00950756); expected 82.0 (0.02)
Passed bias filter:                       39  (0.00950756); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:00.28
# Mc/sec: 367.68
//
Query:       MMETSP1137-20121227|6282_1  [L=281]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (281 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        69  (0.0168211); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.14s 00:00:00.36 Elapsed: 00:00:00.37
# Mc/sec: 1002.40
//
Query:       MMETSP1137-20121227|6283_1  [L=247]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (247 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       103  (0.0251097); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.14s 00:00:00.38 Elapsed: 00:00:00.55
# Mc/sec: 592.75
//
Query:       MMETSP1137-20121227|6284_1  [L=72]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        28  (0.00682594); expected 82.0 (0.02)
Passed bias filter:                       28  (0.00682594); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.14s 00:00:00.27 Elapsed: 00:00:00.38
# Mc/sec: 250.08
//
Query:       MMETSP1137-20121227|6285_1  [L=143]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (143 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        71  (0.0173086); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.18s 00:00:00.35 Elapsed: 00:00:00.36
# Mc/sec: 524.29
//
Query:       MMETSP1137-20121227|6286_1  [L=203]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.7e-46  154.7   2.5    3.3e-46  154.4   1.7    1.1  1  TIGR00307 S8e: ribosomal protein S8.e


Domain annotation for each model (and alignments):
>> TIGR00307  S8e: ribosomal protein S8.e
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  154.4   1.7   8.2e-50   3.3e-46       1     127 []       1     188 [.       1     188 [. 0.99

  Alignments for each domain:
  == domain 1    score: 154.4 bits;  conditional E-value: 8.2e-50
   TIGR00307   1 maisr.grskrkatGakrrkarkkrkyelGrepaetkigekrikkvrtrGGnkkvrllrietanvsdaeeGkvkkvriagvvenpannelvrrnvltkaaiveidig............................................................karvtsrPgqdGvvdgvllee 127
                 m+isr +++kr+ tG+k+ +  kkrk+e+Gr+ a tkig+kr++ vr rGGn k+r+lr +t+n+s+ +e  ++k+ri  vv+n +nnelvr+ +l k aiv+id++                                                             a+++srPgq G++dg++le+
  MMETSP1137-20121227|6286_1   1 MGISRdSQHKRRLTGGKKPHHHKKRKHEMGRQMAMTKIGAKRVHPVRCRGGNIKFRALRLDTGNFSWGSEVCTRKTRILDVVYNASNNELVRTKTLVKNAIVQIDATpyrqwyeahygvvvgkkrraddkeeekkklstrsqakitarqegrqldpninsqfdtgrlLACISSRPGQCGRCDGYVLEG 188
                 89***************************************************************************************************************************************************************************************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (203 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       147  (0.0358362); expected 82.0 (0.02)
Passed bias filter:                      100  (0.0243784); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.20u 0.13s 00:00:00.33 Elapsed: 00:00:00.42
# Mc/sec: 637.95
//
Query:       MMETSP1137-20121227|6287_1  [L=422]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.9e-15   54.4   0.3    2.7e-11   40.7   0.0    2.7  2  TIGR01733 AA-adenyl-dom: amino acid adenylation domain
    1.7e-08   31.6   0.0    2.1e-07   28.0   0.0    2.2  3  TIGR01923 menE: O-succinylbenzoate-CoA ligase
    3.5e-08   30.2   0.2    5.9e-05   19.5   0.0    3.1  2  TIGR03098 ligase_PEP_1: acyl-CoA ligase (AMP-forming), exosortase A-associated
      2e-07   27.7   0.0      1e-05   22.2   0.0    2.1  2  TIGR01734 D-ala-DACP-lig: D-alanine--poly(phosphoribitol) ligase, subunit 1
    7.9e-05   19.4   0.1    0.00082   16.0   0.0    2.4  3  TIGR03208 cyc_hxne_CoA_lg: cyclohexanecarboxylate-CoA ligase
    0.00012   18.4   0.3     0.0044   13.3   0.0    2.9  2  TIGR03205 pimA: dicarboxylate--CoA ligase PimA
    0.00049   16.7   0.0     0.0011   15.6   0.0    1.6  1  TIGR02262 benz_CoA_lig: benzoate-CoA ligase family
     0.0019   14.4   0.0       0.03   10.4   0.0    2.0  2  TIGR02188 Ac_CoA_lig_AcsA: acetate--CoA ligase
  ------ inclusion threshold ------
      0.025   11.0   0.0      0.039   10.4   0.0    1.2  1  TIGR02316 propion_prpE: propionate--CoA ligase


Domain annotation for each model (and alignments):
>> TIGR01733  AA-adenyl-dom: amino acid adenylation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.7   0.0     6e-14   2.7e-11       5     159 ..      28     188 ..      24     200 .. 0.75
   2 !   10.7   0.1   7.7e-05     0.035     238     338 ..     299     422 .]     200     422 .] 0.70

  Alignments for each domain:
  == domain 1    score: 40.7 bits;  conditional E-value: 6e-14
   TIGR01733   5 LderanrlAraLkeaggvrpgdrVavll.ersvelvvailavlkaGaayvpldpey.PaeRlaailedakakllltdeelaeelaeval....eailleeleekaaedasaeeaaeak.....skpddlayviyTSGStGkPKgVlvehrslvnllaslarryels 159
                 + + a+r Ar L++ag +r gd+   ++ + ++  vv  la + aG + v ++ ++  +eR+ + +++++ kl+l+d+++ +++ ++      +++l++   + +++  +++e           +pd +  vi TSG+tG+PKgV+++ +s +   a ++++ + +
  MMETSP1137-20121227|6287_1  28 FWTLAQRAARVLRDAG-LRFGDCQTHYFsDNTLGDVVFRLAAVMAGTVPVTINWQAdTPERVLHKVTVTGSKLVLMDKDTPKDVLQLIAkeapHVLLFDVASLSEHAPLPPAE----FcrdlaLTPDATRIVILTSGTTGNPKGVELSYSSYACNRATFESFLQAG 188
                 55679999*****865.99999866555167799*******************8652789*****************999888877665333233333333333333322222....244567789999********************99998888877766664 PP

  == domain 2    score: 10.7 bits;  conditional E-value: 7.7e-05
   TIGR01733 238 rlvllgGealtaelverlraraeevrlinlYGpTEttvvvtveevsadeesee.e...............pvpiGrpla.nvrlyvldea.......lrpvpvgvvGELyigGagvarGYlnrpe 338
                 + +llg   + +++v+rl++++++      +G TEt++ v+ + +  +e+++                   + iGrp +  +++ ++++        + ++++g++G L+ +G  +++GY+ +pe
  MMETSP1137-20121227|6287_1 299 TILLLGSAPVGPTTVDRLQRHCGR-LPTVRFGSTETCLQVMGTPLYLSESERLdAfkagwdhvfggqpqtGYYIGRPHPpYTECKIVKSTergqagyMVECAEGEPGQLVTRGGNIMKGYVANPE 422
                 455666666777788888877773.345567888888777765544444333322456777777777666667888875256788887765555556679*********************9986 PP

>> TIGR01923  menE: O-succinylbenzoate-CoA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.0   0.0   4.6e-10   2.1e-07       8     172 ..      31     210 ..      26     238 .. 0.74
   2 ?    0.8   0.0     0.081        37     229     268 ..     301     341 ..     291     352 .. 0.72
   3 ?   -4.2   0.0       2.7   1.2e+03     297     314 ..     402     419 ..     397     420 .. 0.83

  Alignments for each domain:
  == domain 1    score: 28.0 bits;  conditional E-value: 4.6e-10
   TIGR01923   8 eaarlAkalkaqsvrkgdvva.llaenslelvllllallllgveiallntrLte.kelttqlkelkvellltdslleeke.dlqaisldeleaeaeaeevs...........lsasfsldkiatlifTSgstGkpKavvqtfrnhyasavgsaeklgftesdnWL..lsLPlyHvsGlsil 172
                  a+r A+ l+  ++r gd  + ++++n l  v++ la++ +g + + +n +  + +++ + +  + ++l+l d+   + + +l a +++++ + +  + +s            +  ++ d++  +i+TSg+tG+pK+v  +++ +  +  +    l++ ++ +    ++ Pl+H    +++
  MMETSP1137-20121227|6287_1  31 LAQRAARVLRDAGLRFGDCQThYFSDNTLGDVVFRLAAVMAGTVPVTINWQADTpERVLHKVTVTGSKLVLMDKDTPKDVlQLIAKEAPHVLLFDV-ASLSehaplppaefcRDLALTPDATRIVILTSGTTGNPKGVELSYSSYACNRATFESFLQAGDDKSLVpvVVNPLHHTNSTALV 210
                 57899************987637799***********************99655155677888899999999988886554555666666666665.333345566666655677889999*********************998888777777777776665432267799998877766 PP

  == domain 2    score: 0.8 bits;  conditional E-value: 0.081
   TIGR01923 229 iLLGGsaipaplieeaq..ekglpiyksyGmTEtasqvvtle 268
                 +LLG + +  + + + q  + +lp+   +G+TEt+ qv+ + 
  MMETSP1137-20121227|6287_1 301 LLLGSAPVGPTTVDRLQrhCGRLPTV-RFGSTETCLQVMGTP 341
                 67788888777776554115578885.6*********98765 PP

  == domain 3    score: -4.2 bits;  conditional E-value: 2.7
   TIGR01923 297 ghgeilvkganlmkgYle 314
                 + g+++ +g n+mkgY  
  MMETSP1137-20121227|6287_1 402 EPGQLVTRGGNIMKGYVA 419
                 56899999********75 PP

>> TIGR03098  ligase_PEP_1: acyl-CoA ligase (AMP-forming), exosortase A-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.0   1.3e-07   5.9e-05      33     208 ..      30     194 ..      15     204 .. 0.74
   2 !    7.4   0.0   0.00061      0.28     350     375 ..     397     422 .]     374     422 .] 0.90

  Alignments for each domain:
  == domain 1    score: 19.5 bits;  conditional E-value: 1.3e-07
   TIGR03098  33 eevkalasglkalglkrgeRvaiyl.ekrletvlalfaaslaggvfvpinPlLkaeqvayilkDcnvkllvtskerldaledalakchdlrtlilvdepekasekkagaevlsweklkaleeaa..akvdvidddlaailYtsGstGrPkgvvlshrnlvaGaksvaqyLelredDrll 208
                   +++ a++l+  gl+ g+  + y  +  l  v+  +aa++ag+v v in     +  + +l+    k+ vt ++ + + +d+  k  d+ +li  ++p+    +     v s+++ + l +a+  +    ++d    ++ tsG tG+Pkgv ls +       +  ++L+  +d  l+
  MMETSP1137-20121227|6287_1  30 TLAQRAARVLRDAGLRFGDCQTHYFsDNTLGDVVFRLAAVMAGTVPVTINWQA--DTPERVLH----KVTVTGSKLVLMDKDTP-K--DVLQLIAKEAPHVLLFD-----VASLSEHAPLPPAEfcRDLALTPDATRIVILTSGTTGNPKGVELSYSSYACNRATFESFLQAGDDKSLV 194
                 567889999999******9988876255678999****************754..44444443....67788776665555554.4..57789988888865555.....44666666666666558888999999999****************998877777777777766665555 PP

  == domain 2    score: 7.4 bits;  conditional E-value: 0.00061
   TIGR03098 350 ecapeeeGelvhrGalvakGYWndpe 375
                 eca +e+G lv rG  + kGY  +pe
  MMETSP1137-20121227|6287_1 397 ECAEGEPGQLVTRGGNIMKGYVANPE 422
                 8********************98886 PP

>> TIGR01734  D-ala-DACP-lig: D-alanine--poly(phosphoribitol) ligase, subunit 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.2   0.0   2.2e-08     1e-05      57     166 ..      55     173 ..      17     193 .. 0.70
   2 !    3.5   0.0    0.0097       4.4     338     362 ..     398     422 .]     380     422 .] 0.91

  Alignments for each domain:
  == domain 1    score: 22.2 bits;  conditional E-value: 2.2e-08
   TIGR01734  57 GkqefemlvaflgsiksGhayiPvDtsi.pleriekikeaaepelvievaelsielvete......vitlealeeieeekaeavel..ekavkeddnyyiiytsGstGkPkGvqishdn 166
                  +++   +v  l+++ +G+  + ++ +  + er+ +   ++ ++lv+  ++ + ++ +        v+  +  +  e+   ++ e+  + a+  d +  +i tsG+tG+PkGv++s+ +
  MMETSP1137-20121227|6287_1  55 SDNTLGDVVFRLAAVMAGTVPVTINWQAdTPERVLHKVTVTGSKLVLMDKDTPKDVLQLIakeaphVLLFDVASLSEHAPLPPAEFcrDLALTPDATRIVILTSGTTGNPKGVELSYSS 173
                 55555666777888888887777776541458888888899999999999999988766522333333333333333333455554226678899999*****************9976 PP

  == domain 2    score: 3.5 bits;  conditional E-value: 0.0097
   TIGR01734 338 lsegekGeivivGdsvskGylnnpe 362
                  +ege G +v  G  + kGy+ npe
  MMETSP1137-20121227|6287_1 398 CAEGEPGQLVTRGGNIMKGYVANPE 422
                 5799*******************97 PP

>> TIGR03208  cyc_hxne_CoA_lg: cyclohexanecarboxylate-CoA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.0      0.16        73     269     299 ..      27      58 ..      10      75 .. 0.78
   2 !   16.0   0.0   1.8e-06   0.00082     181     236 ..     136     190 ..     120     211 .. 0.76
   3 ?   -2.0   0.0      0.53   2.4e+02     384     408 ..     397     421 ..     371     422 .] 0.73

  Alignments for each domain:
  == domain 1    score: -0.3 bits;  conditional E-value: 0.16
   TIGR03208 269 diwn.aakaaeliretgvtftmastafltdla 299
                 + w  a +aa+++r+ g+ f  + t +++d +
  MMETSP1137-20121227|6287_1  27 EFWTlAQRAARVLRDAGLRFGDCQTHYFSDNT 58 
                 66763567999999999999999999988854 PP

  == domain 2    score: 16.0 bits;  conditional E-value: 1.8e-06
   TIGR03208 181 pdaaailrgdrlspddvtqliytsgttgepkgvmhtantllsnilayaerlelgeg 236
                 p+ a   r  +l+pd    +i tsgttg+pkgv  +  +  +n  ++   l+ g+ 
  MMETSP1137-20121227|6287_1 136 PP-AEFCRDLALTPDATRIVILTSGTTGNPKGVELSYSSYACNRATFESFLQAGDD 190
                 44.566778899*********************99988888888888777776654 PP

  == domain 3    score: -2.0 bits;  conditional E-value: 0.53
   TIGR03208 384 klsagevgrllvraasnfggylkrp 408
                 + ++ge g+l+ r+   + gy+  p
  MMETSP1137-20121227|6287_1 397 ECAEGEPGQLVTRGGNIMKGYVANP 421
                 4568999**************9887 PP

>> TIGR03205  pimA: dicarboxylate--CoA ligase PimA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   0.0   9.6e-06    0.0044     183     274 ..     137     228 ..      10     235 .. 0.84
   2 ?    0.4   0.0     0.075        34     389     411 ..     399     421 ..     303     422 .] 0.83

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 9.6e-06
   TIGR03205 183 paewp...avkaddvallqytggttglpkgamlthgnltsavsiydvwgkrsraergdvervicvlplfhiyaltvillrslkrgdlislhqrfd 274
                 pae+    a+++d   ++  t gttg pkg  l+++  +   + ++ + +   a  ++    ++v pl h  + +++     k g  + l qr+ 
  MMETSP1137-20121227|6287_1 137 PAEFCrdlALTPDATRIVILTSGTTGNPKGVELSYSSYACNRATFESFLQ---AGDDKSLVPVVVNPLHHTNSTALVDWAMRKPGTHLHLVQRYS 228
                 45553222799********************************9999876...333333334568899999999999999999999999999986 PP

  == domain 2    score: 0.4 bits;  conditional E-value: 0.075
   TIGR03205 389 ppgevgelrirgpnvtrgywnra 411
                   ge g+l  rg n+ +gy  ++
  MMETSP1137-20121227|6287_1 399 AEGEPGQLVTRGGNIMKGYVANP 421
                 5699999999********98876 PP

>> TIGR02262  benz_CoA_lig: benzoate-CoA ligase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   2.5e-06    0.0011      30     186 ..      22     174 ..      14     187 .. 0.76

  Alignments for each domain:
  == domain 1    score: 15.6 bits;  conditional E-value: 2.5e-06
   TIGR02262  30 slsygeleaevrrvaaalrrlGvkreervllvlldtvdfpivf.lGairaGivpvalntll.taddyaylledsrarvvlvseel.lpvlkevlaklpdleklvvvgakpagekqlaellateseqekaaatkaddpafwlyssGstGapkGvvhvhsnl 186
                 +ls ge+ + ++r+a +lr  G++  +     + d +   +vf l a+ aG vpv++n +  t +   + ++ + ++ vl+ ++    vl+ ++ + p++    v++ ++ +    ae         +  a ++d +   + +sG+tG pkGv   +s+ 
  MMETSP1137-20121227|6287_1  22 TLSRGEFWTLAQRAARVLRDAGLRFGDCQTHYFSDNTLGDVVFrLAAVMAGTVPVTINWQAdTPERVLHKVTVTGSKLVLMDKDTpKDVLQLIAKEAPHVLLFDVASLSEHAPLPPAE-------FCRDLALTPDATRIVILTSGTTGNPKGVELSYSSY 174
                 567788888899******************99*9999999998789************764244555555666778888777665256777777777877666666654433333333.......345567789999999*************8877765 PP

>> TIGR02188  Ac_CoA_lig_AcsA: acetate--CoA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.0     0.025        11      87     167 ..      20     102 ..       7     118 .. 0.74
   2 !   10.4   0.0   6.6e-05      0.03     239     268 ..     149     178 ..     130     192 .. 0.79

  Alignments for each domain:
  == domain 1    score: 1.9 bits;  conditional E-value: 0.025
   TIGR02188  87 srkltYaellrevcrlanvlkelGvkkgdrvaiYlpm.ipeaviamlacaRiGav.hsvvfaGfsaealaeRivdaeaklvit 167
                 s +l+  e+ +   r+a vl+++G++ gd  + Y+   +   v++ la++  G+v  ++ +   ++e + ++++ + +klv+ 
  MMETSP1137-20121227|6287_1  20 STTLSRGEFWTLAQRAARVLRDAGLRFGDCQTHYFSDnTLGDVVFRLAAVMAGTVpVTINWQADTPERVLHKVTVTGSKLVLM 102
                 66778888889999***************999998751455666677777777762345567777777777777777777765 PP

  == domain 2    score: 10.4 bits;  conditional E-value: 6.6e-05
   TIGR02188 239 edplfiLYtsGstGkPkGvlhttgGyllla 268
                 +    ++ tsG+tG+PkGv  + + y+   
  MMETSP1137-20121227|6287_1 149 DATRIVILTSGTTGNPKGVELSYSSYACNR 178
                 55667889***********99999998654 PP

>> TIGR02316  propion_prpE: propionate--CoA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   8.5e-05     0.039     233     263 ..     150     180 ..     137     191 .. 0.86

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 8.5e-05
   TIGR02316 233 epsyilytsgttgkpkgvqrdvggyavalaa 263
                  + +++ tsgttg pkgv+     ya   a+
  MMETSP1137-20121227|6287_1 150 ATRIVILTSGTTGNPKGVELSYSSYACNRAT 180
                 5678999******************998776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (422 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       113  (0.0275475); expected 82.0 (0.02)
Passed bias filter:                      108  (0.0263286); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                         9  (0.00219405); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.47u 0.15s 00:00:00.62 Elapsed: 00:00:00.55
# Mc/sec: 1012.72
//
Query:       MMETSP1137-20121227|6288_1  [L=112]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (112 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        45  (0.0109703); expected 82.0 (0.02)
Passed bias filter:                       42  (0.0102389); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.14s 00:00:00.29 Elapsed: 00:00:00.63
# Mc/sec: 234.65
//
Query:       MMETSP1137-20121227|6289_1  [L=96]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (96 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       265  (0.0646026); expected 82.0 (0.02)
Passed bias filter:                      191  (0.0465627); expected 82.0 (0.02)
Passed Vit filter:                        19  (0.00463189); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.15s 00:00:00.31 Elapsed: 00:00:00.31
# Mc/sec: 408.74
//
Query:       MMETSP1137-20121227|6292_1  [L=64]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        32  (0.00780107); expected 82.0 (0.02)
Passed bias filter:                       32  (0.00780107); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.17s 00:00:00.29 Elapsed: 00:00:00.41
# Mc/sec: 206.03
//
Query:       MMETSP1137-20121227|6293_1  [L=101]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       135  (0.0329108); expected 82.0 (0.02)
Passed bias filter:                      102  (0.0248659); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.16s 00:00:00.31 Elapsed: 00:00:00.36
# Mc/sec: 370.30
//
Query:       MMETSP1137-20121227|6295_1  [L=308]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (308 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        99  (0.0241346); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.16s 00:00:00.41 Elapsed: 00:00:00.38
# Mc/sec: 1069.81
//
Query:       MMETSP1137-20121227|6296_1  [L=176]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (176 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        46  (0.011214); expected 82.0 (0.02)
Passed bias filter:                       39  (0.00950756); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.12s 00:00:00.30 Elapsed: 00:00:00.28
# Mc/sec: 801.04
//
Query:       MMETSP1137-20121227|6298_1  [L=122]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (122 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        43  (0.0104827); expected 82.0 (0.02)
Passed bias filter:                       39  (0.00950756); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.10s 00:00:00.24 Elapsed: 00:00:00.61
# Mc/sec: 263.98
//
Query:       MMETSP1137-20121227|6299_1  [L=181]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (181 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       306  (0.0745978); expected 82.0 (0.02)
Passed bias filter:                      112  (0.0273038); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.13s 00:00:00.32 Elapsed: 00:00:03.00
# Mc/sec: 79.63
//
Query:       MMETSP1137-20121227|6300_1  [L=409]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (409 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.13s 00:00:00.42 Elapsed: 00:00:00.70
# Mc/sec: 771.19
//
Query:       MMETSP1137-20121227|6301_1  [L=115]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (115 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        62  (0.0151146); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.09s 00:00:00.25 Elapsed: 00:00:00.40
# Mc/sec: 379.47
//
Query:       MMETSP1137-20121227|6302_1  [L=71]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (71 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        24  (0.0058508); expected 82.0 (0.02)
Passed bias filter:                       24  (0.0058508); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.13s 00:00:00.25 Elapsed: 00:00:00.75
# Mc/sec: 124.95
//
Query:       MMETSP1137-20121227|6303_1  [L=254]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (254 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       156  (0.0380302); expected 82.0 (0.02)
Passed bias filter:                      101  (0.0246221); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.10s 00:00:00.33 Elapsed: 00:00:00.60
# Mc/sec: 558.75
//
Query:       MMETSP1137-20121227|6304_1  [L=126]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (126 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        85  (0.0207216); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.14s 00:00:00.28 Elapsed: 00:00:00.41
# Mc/sec: 405.63
//
Query:       MMETSP1137-20121227|6306_1  [L=104]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (104 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       131  (0.0319356); expected 82.0 (0.02)
Passed bias filter:                      116  (0.0282789); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.14s 00:00:00.31 Elapsed: 00:00:00.31
# Mc/sec: 442.80
//
Query:       MMETSP1137-20121227|6310_1  [L=78]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (78 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        61  (0.0148708); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.30
# Mc/sec: 343.17
//
Query:       MMETSP1137-20121227|6311_1  [L=673]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00089   15.6   0.1    0.00089   15.6   0.1    1.9  3  TIGR03591 polynuc_phos: polyribonucleotide nucleotidyltransferase


Domain annotation for each model (and alignments):
>> TIGR03591  polynuc_phos: polyribonucleotide nucleotidyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.0   1.7      0.18   7.5e+02     229     268 ..      40      78 ..       9      88 .. 0.38
   2 !   15.6   0.1   2.2e-07   0.00089     553     621 ..     224     297 ..     188     307 .. 0.81
   3 ?   -4.3   0.3      0.23   9.4e+02     257     279 ..     432     454 ..     412     474 .. 0.42

  Alignments for each domain:
  == domain 1    score: -4.0 bits;  conditional E-value: 0.18
   TIGR03591 229 edeelkkkveelaeekelkealkieekqereealeevkee 268
                 ++e+ + + ee+ ++++l+e  k + k +r+++++e  +e
  MMETSP1137-20121227|6311_1  40 RQERHE-DAEETRAAQRLAERDKERAKAARRQRTAEQAKE 78 
                 111111.111111112222222222233333332222222 PP

  == domain 2    score: 15.6 bits;  conditional E-value: 2.2e-07
   TIGR03591 553 etikinkdkireviGkgGkvireiieetgakidiedd.....Gtvkiaaadkeaaekakklieeitaevevgkv 621
                  ++ ++ + ++ +iGkgG++i +++ e+ga+++++ +     G+v +   +++a+e+a+ ++e+  + +   + 
  MMETSP1137-20121227|6311_1 224 REVLVPDELVGVLIGKGGATISTLQRESGAQVKMTSErdesgGRVLLLRGEADAVERAQGMVEATLNAAAEREA 297
                 567799999***********************99765566889*******************998766655554 PP

  == domain 3    score: -4.3 bits;  conditional E-value: 0.23
   TIGR03591 257 ereealeevkeevleelaeeeee 279
                 +r+++ ++ ++e+ +e+a+e ++
  MMETSP1137-20121227|6311_1 432 SRQSEAQQKRAEASAEAAAERQQ 454
                 22222222222222222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (673 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       275  (0.0670405); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.17s 00:00:00.70 Elapsed: 00:00:00.77
# Mc/sec: 1153.62
//
Query:       MMETSP1137-20121227|6312_1  [L=161]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (161 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       228  (0.0555826); expected 82.0 (0.02)
Passed bias filter:                      152  (0.0370551); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.14s 00:00:00.33 Elapsed: 00:00:00.37
# Mc/sec: 574.33
//
Query:       MMETSP1137-20121227|6313_1  [L=401]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (401 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       110  (0.0268162); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.11s 00:00:00.41 Elapsed: 00:00:00.42
# Mc/sec: 1260.18
//
Query:       MMETSP1137-20121227|6314_1  [L=55]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        25  (0.00609459); expected 82.0 (0.02)
Passed bias filter:                       24  (0.0058508); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.14s 00:00:00.27 Elapsed: 00:00:00.46
# Mc/sec: 157.81
//
Query:       MMETSP1137-20121227|6316_1  [L=107]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (107 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        91  (0.0221843); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.14s 00:00:00.29 Elapsed: 00:00:00.25
# Mc/sec: 564.91
//
Query:       MMETSP1137-20121227|6317_1  [L=271]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (271 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       126  (0.0307167); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.16s 00:00:00.37 Elapsed: 00:00:00.38
# Mc/sec: 941.29
//
Query:       MMETSP1137-20121227|6322_1  [L=68]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (68 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        53  (0.0129205); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.13s 00:00:00.26 Elapsed: 00:00:00.25
# Mc/sec: 359.01
//
Query:       MMETSP1137-20121227|6323_1  [L=270]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (270 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       669  (0.163091); expected 82.0 (0.02)
Passed bias filter:                      234  (0.0570453); expected 82.0 (0.02)
Passed Vit filter:                        32  (0.00780107); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.18s 00:00:00.50 Elapsed: 00:00:00.54
# Mc/sec: 659.95
//
Query:       MMETSP1137-20121227|6324_1  [L=41]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (41 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        62  (0.0151146); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.16s 00:00:00.27 Elapsed: 00:00:00.36
# Mc/sec: 150.32
//
Query:       MMETSP1137-20121227|6325_1  [L=425]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (425 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       234  (0.0570453); expected 82.0 (0.02)
Passed bias filter:                      115  (0.0280351); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.14s 00:00:00.47 Elapsed: 00:00:01.09
# Mc/sec: 514.64
//
Query:       MMETSP1137-20121227|6326_1  [L=218]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.3e-24   82.8   0.0    4.7e-24   82.4   0.0    1.2  1  TIGR01068 thioredoxin: thioredoxin
    1.1e-12   46.1   0.0    1.8e-12   45.3   0.0    1.3  1  TIGR01126 pdi_dom: protein disulfide-isomerase domain
    2.8e-11   41.5   0.0    3.8e-11   41.0   0.0    1.1  1  TIGR01130 ER_PDI_fam: protein disulfide isomerases
      0.001   16.5   0.0     0.0024   15.3   0.0    1.6  1  TIGR00385 dsbE: periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily
     0.0066   14.4   0.0       0.01   13.7   0.0    1.3  1  TIGR00411 redox_disulf_1: redox-active disulfide protein 1
  ------ inclusion threshold ------
      0.037   12.3   0.0      0.099   10.9   0.0    1.8  1  TIGR02200 GlrX_actino: glutaredoxin-like protein


Domain annotation for each model (and alignments):
>> TIGR01068  thioredoxin: thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.4   0.0   6.8e-27   4.7e-24       4     100 ..     123     216 ..     120     217 .. 0.89

  Alignments for each domain:
  == domain 1    score: 82.4 bits;  conditional E-value: 6.8e-27
   TIGR01068   4 enfeetvassdklvlvDfwAeWCgpCkmlaPvleelakeleekvkvvKlnvdeeqeiaakygirsiPtlllfkngkevkrvvGakpkaalkeliekl 100
                 e +++++++ d l +v f A WCgpC+m++Pv e l++e + +++++K++vd+ +e+aa++g++++Pt  ++kngk v+++vGa   ++lk+ ++++
  MMETSP1137-20121227|6326_1 123 EAYDKALKK-DGLTIVYFTAAWCGPCRMVSPVYEMLSQEHA-SADFLKVDVDDLPEVAAAAGVSAMPTFKFMKNGKCVDTIVGADV-EKLKSSLSQH 216
                 566777766.579************************7777.6****************************************976.7788887765 PP

>> TIGR01126  pdi_dom: protein disulfide-isomerase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.3   0.0   2.7e-15   1.8e-12       4      83 ..     123     197 ..     120     216 .. 0.87

  Alignments for each domain:
  == domain 1    score: 45.3 bits;  conditional E-value: 2.7e-15
   TIGR01126   4 enfdelvldenkdvlvefyaPWCGhCkklaPeyeklakelkkeeekvkiakvdataekelaskfkvsgfPtlkffkkgkk 83 
                 e +d++++ ++  ++v f+a WCG C+ ++P+ye l++e ++++      kvd +   e+a+  +vs+ Pt kf+k+gk 
  MMETSP1137-20121227|6326_1 123 EAYDKALK-KDGLTIVYFTAAWCGPCRMVSPVYEMLSQEHASAD----FLKVDVDDLPEVAAAAGVSAMPTFKFMKNGKC 197
                 55677777.8999*************************999764....79***************************994 PP

>> TIGR01130  ER_PDI_fam: protein disulfide isomerases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.0   0.0   5.6e-14   3.8e-11       3      87 ..     116     197 ..     114     204 .. 0.88

  Alignments for each domain:
  == domain 1    score: 41.0 bits;  conditional E-value: 5.6e-14
   TIGR01130   3 vlelt.kenfddlikenelvLveFYAPWCGHCksLaPeYekAAeelkkkspkvklakvDateekelaqkygvsGyPtLkifrnges 87 
                 v++l  +e++d+++k++ l++v F A WCG C+ + P Ye     l++++++    kvD  +  e+a   gvs  Pt k+++ng+ 
  MMETSP1137-20121227|6326_1 116 VVVLGdDEAYDKALKKDGLTIVYFTAAWCGPCRMVSPVYEM----LSQEHASADFLKVDVDDLPEVAAAAGVSAMPTFKFMKNGKC 197
                 666651578******************************85....777777777******************************84 PP

>> TIGR00385  dsbE: periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   3.6e-06    0.0024      54      91 ..     124     160 ..     112     180 .. 0.85

  Alignments for each domain:
  == domain 1    score: 15.3 bits;  conditional E-value: 3.6e-06
   TIGR00385  54 lltaevlkkgklvLlnvwasWCptCraehplLkelake 91 
                 +++ ++lkk  l+++ + a+WC++Cr   p+ + l++e
  MMETSP1137-20121227|6326_1 124 AYD-KALKKDGLTIVYFTAAWCGPCRMVSPVYEMLSQE 160
                 566.8999********************9999999987 PP

>> TIGR00411  redox_disulf_1: redox-active disulfide protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   0.0   1.5e-05      0.01       3      63 ..     136     197 ..     134     215 .. 0.80

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 1.5e-05
   TIGR00411   3 ielftsPtCPyCPkakkvveevakeegdkvevekinvmedlkkaleyGimavPaivi..ngkv 63 
                 i  ft+  C  C +   v e   +e +  ++ +k++v++ ++ a   G+ a+P+     ngk 
  MMETSP1137-20121227|6326_1 136 IVYFTAAWCGPCRMVSPVYEMLSQEHA-SADFLKVDVDDLPEVAAAAGVSAMPTFKFmkNGKC 197
                 667**************9999999876.68***********************9743226654 PP

>> TIGR02200  GlrX_actino: glutaredoxin-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00014     0.099       4      54 ..     138     188 ..     135     208 .. 0.59

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 0.00014
   TIGR02200   4 vYatswCgyCaslk...rtL..dkdgaeYevvdiekdeeaadyvksvndGnktvPt 54 
                  +++ wCg C+++    + L  ++  a++  vd+++ +e a+       G   +Pt
  MMETSP1137-20121227|6326_1 138 YFTAAWCGPCRMVSpvyEMLsqEHASADFLKVDVDDLPEVAAA-----AGVSAMPT 188
                 46889*******8722244522334455555666554443332.....13334555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (218 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       103  (0.0251097); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.22u 0.16s 00:00:00.38 Elapsed: 00:00:00.66
# Mc/sec: 435.96
//
Query:       MMETSP1137-20121227|6327_1  [L=68]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (68 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        66  (0.0160897); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.15s 00:00:00.27 Elapsed: 00:00:00.49
# Mc/sec: 183.17
//
Query:       MMETSP1137-20121227|6328_1  [L=233]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (233 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       201  (0.0490005); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.17s 00:00:00.40 Elapsed: 00:00:00.93
# Mc/sec: 330.68
//
Query:       MMETSP1137-20121227|6329_1  [L=1073]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1073 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       140  (0.0341297); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.65u 0.18s 00:00:00.83 Elapsed: 00:00:01.10
# Mc/sec: 1287.49
//
Query:       MMETSP1137-20121227|6331_1  [L=67]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (67 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        35  (0.00853242); expected 82.0 (0.02)
Passed bias filter:                       33  (0.00804486); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.17s 00:00:00.29 Elapsed: 00:00:00.39
# Mc/sec: 226.75
//
Query:       MMETSP1137-20121227|6332_1  [L=159]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (159 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        79  (0.0192589); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.16s 00:00:00.33 Elapsed: 00:00:00.49
# Mc/sec: 428.29
//
Query:       MMETSP1137-20121227|6333_1  [L=416]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (416 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       149  (0.0363237); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.14s 00:00:00.43 Elapsed: 00:00:00.48
# Mc/sec: 1143.91
//
Query:       MMETSP1137-20121227|6334_1  [L=48]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (48 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        60  (0.014627); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.25
# Mc/sec: 253.42
//
Query:       MMETSP1137-20121227|6335_1  [L=510]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.4e-11   41.0   0.0    5.5e-11   40.3   0.0    1.2  1  TIGR03598 GTPase_YsxC: ribosome biogenesis GTP-binding protein YsxC
    1.3e-10   39.0   0.0      2e-10   38.3   0.0    1.2  1  TIGR03596 GTPase_YlqF: ribosome biogenesis GTP-binding protein YlqF
      2e-08   31.5   0.0    2.7e-08   31.0   0.0    1.1  1  TIGR03594 GTPase_EngA: ribosome-associated GTPase EngA
    3.7e-07   27.1   0.0    5.1e-07   26.7   0.0    1.1  1  TIGR03918 GTP_HydF: [FeFe] hydrogenase H-cluster maturation GTPase HydF
      1e-05   22.6   0.0    1.4e-05   22.1   0.0    1.1  1  TIGR00991 3a0901s02IAP34: GTP-binding protein
    2.5e-05   21.4   0.0    3.7e-05   20.8   0.0    1.1  1  TIGR00450 mnmE_trmE_thdF: tRNA modification GTPase TrmE
    0.00017   18.9   0.0    0.00022   18.5   0.0    1.1  1  TIGR00436 era: GTP-binding protein Era
     0.0005   17.1   0.0    0.00071   16.7   0.0    1.1  1  TIGR03597 GTPase_YqeH: ribosome biogenesis GTPase YqeH
     0.0011   16.5   0.0     0.0019   15.8   0.0    1.2  1  TIGR00231 small_GTP: small GTP-binding protein domain
      0.003   13.6   0.0     0.0056   12.7   0.0    1.3  1  TIGR00993 3a0901s04IAP86: chloroplast protein import component Toc86/159, G and M domains
  ------ inclusion threshold ------
      0.026   11.2   0.0      0.043   10.5   0.0    1.2  1  TIGR03156 GTP_HflX: GTP-binding protein HflX


Domain annotation for each model (and alignments):
>> TIGR03598  GTPase_YsxC: ribosome biogenesis GTP-binding protein YsxC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.3   0.0   1.5e-13   5.5e-11      21      72 ..     140     190 ..     125     191 .. 0.90

  Alignments for each domain:
  == domain 1    score: 40.3 bits;  conditional E-value: 1.5e-13
   TIGR03598  21 iafaGrSNvGKSsliNaLtnrkklartSktPGrTqlinffevneelrlvDlP 72 
                 + ++GrSN+GKSs++NaL++ + +a +S +PG+T+ +   +v+e+l + D P
  MMETSP1137-20121227|6335_1 140 LTVIGRSNAGKSSVVNALVGAR-VASVSAQPGHTKRVQSARVSESLLVRDTP 190
                 5789****************98.**************999999988887877 PP

>> TIGR03596  GTPase_YlqF: ribosome biogenesis GTP-binding protein YlqF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.3   0.0   5.5e-13     2e-10     118     171 ..     137     190 ..     130     199 .. 0.95

  Alignments for each domain:
  == domain 1    score: 38.3 bits;  conditional E-value: 5.5e-13
   TIGR03596 118 airalvvGiPNvGKStliNrlakkkvakvgnkpgvTksqqwiklskeleLlDtP 171
                 ++ + v+G  N GKS+++N l++ +va+v ++pg Tk+ q  ++s++l + DtP
  MMETSP1137-20121227|6335_1 137 PLTLTVIGRSNAGKSSVVNALVGARVASVSAQPGHTKRVQSARVSESLLVRDTP 190
                 56789************************************************9 PP

>> TIGR03594  GTPase_EngA: ribosome-associated GTPase EngA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.0   0.0   7.4e-11   2.7e-08     170     212 ..     132     174 ..      81     190 .. 0.83

  Alignments for each domain:
  == domain 1    score: 31.0 bits;  conditional E-value: 7.4e-11
   TIGR03594 170 eeeeepikiaiiGrpNvGKStLvNallgeervivsdiaGtTrD 212
                 e+ e p+ +++iGr N+GKS+ vNal+g + + vs ++G T+ 
  MMETSP1137-20121227|6335_1 132 EDAELPLTLTVIGRSNAGKSSVVNALVGARVASVSAQPGHTKR 174
                 3345689999*****************************9985 PP

>> TIGR03918  GTP_HydF: [FeFe] hydrogenase H-cluster maturation GTPase HydF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.7   0.0   1.4e-09   5.1e-07       8      43 ..     138     173 ..     132     199 .. 0.85

  Alignments for each domain:
  == domain 1    score: 26.7 bits;  conditional E-value: 1.4e-09
   TIGR03918   8 lhialfGrrNaGKSsliNaltgqdvaivsdvpGtTt 43 
                 l+++++Gr NaGKSs++Nal+g  va vs +pG T 
  MMETSP1137-20121227|6335_1 138 LTLTVIGRSNAGKSSVVNALVGARVASVSAQPGHTK 173
                 57899****************************985 PP

>> TIGR00991  3a0901s02IAP34: GTP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.1   0.0   3.9e-08   1.4e-05      38      96 ..     137     192 ..     126     218 .. 0.76

  Alignments for each domain:
  == domain 1    score: 22.1 bits;  conditional E-value: 3.9e-08
   TIGR00991  38 sltilvmgkggvgksstvnsiigervaavsafqseglrpvlvsrtragftlniidtpgl 96 
                  lt+ v+g+   gkss vn+++g rva+vsa      r   v  +r   +l + dtp l
  MMETSP1137-20121227|6335_1 137 PLTLTVIGRSNAGKSSVVNALVGARVASVSAQPGHTKR---VQSARVSESLLVRDTPPL 192
                 69****************************97666655...445566667777788776 PP

>> TIGR00450  mnmE_trmE_thdF: tRNA modification GTPase TrmE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   0.0   9.8e-08   3.7e-05     207     246 ..     135     174 ..     126     182 .. 0.90

  Alignments for each domain:
  == domain 1    score: 20.8 bits;  conditional E-value: 9.8e-08
   TIGR00450 207 kdglklaivGktNvGKSSLlNallkkdraiVsdikGttRD 246
                 + +l l+++G+ N+GKSS++Nal+    a Vs+ +G t+ 
  MMETSP1137-20121227|6335_1 135 ELPLTLTVIGRSNAGKSSVVNALVGARVASVSAQPGHTKR 174
                 56899*******************************9985 PP

>> TIGR00436  era: GTP-binding protein Era
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.0   5.9e-07   0.00022       3      39 ..     140     175 ..     138     195 .. 0.84

  Alignments for each domain:
  == domain 1    score: 18.5 bits;  conditional E-value: 5.9e-07
   TIGR00436   3 vailGrpnvGKSTLlNkllgqkisivSpkaqTTrnri 39 
                  +++Gr+n+GKS ++N l+g+ ++ vS  +  T+  +
  MMETSP1137-20121227|6335_1 140 LTVIGRSNAGKSSVVNALVGARVASVSAQPGHTKR-V 175
                 689************************99988864.4 PP

>> TIGR03597  GTPase_YqeH: ribosome biogenesis GTPase YqeH
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0   1.9e-06   0.00071     159     215 ..     141     192 ..     132     199 .. 0.88

  Alignments for each domain:
  == domain 1    score: 16.7 bits;  conditional E-value: 1.9e-06
   TIGR03597 159 yvvGvtNVGKSsliNkllklnkgkkkvittSkfpgTTldlieipldkesvllDtpGi 215
                  v+G +N GKSs++N+l+       +v ++S  pg T  + + ++++   + Dtp +
  MMETSP1137-20121227|6335_1 141 TVIGRSNAGKSSVVNALVG-----ARVASVSAQPGHTKRVQSARVSESLLVRDTPPL 192
                 69****************3.....44689****************9999999**965 PP

>> TIGR00231  small_GTP: small GTP-binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0   5.2e-06    0.0019       6      44 ..     140     178 ..     137     184 .. 0.89

  Alignments for each domain:
  == domain 1    score: 15.8 bits;  conditional E-value: 5.2e-06
   TIGR00231   6 ivivGhvdvGKstLlnsllknkisiteskpgvtrdyvte 44 
                 ++++G++++GKs+  n l +  ++ ++++pg t+ + ++
  MMETSP1137-20121227|6335_1 140 LTVIGRSNAGKSSVVNALVGARVASVSAQPGHTKRVQSA 178
                 78****************************999887665 PP

>> TIGR00993  3a0901s04IAP86: chloroplast protein import component Toc86/159, G and M domains
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.7   0.0   1.5e-05    0.0056     113     160 ..     132     179 ..     125     210 .. 0.81

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 1.5e-05
   TIGR00993 113 delafslnilvlGkaGvGksatinsilgevkasidafglattsvreie 160
                 ++ ++ l++ v+G++  Gks+ +n+++g   as++a    t++v+   
  MMETSP1137-20121227|6335_1 132 EDAELPLTLTVIGRSNAGKSSVVNALVGARVASVSAQPGHTKRVQSAR 179
                 566788999***********************************9754 PP

>> TIGR03156  GTP_HflX: GTP-binding protein HflX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   0.00012     0.043     191     215 ..     139     163 ..     128     172 .. 0.87

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 0.00012
   TIGR03156 191 tvalvGYTNaGKstllnaltkaevl 215
                 t++++G  NaGKs+++nal++a+v 
  MMETSP1137-20121227|6335_1 139 TLTVIGRSNAGKSSVVNALVGARVA 163
                 6899****************99875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (510 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       141  (0.0343735); expected 82.0 (0.02)
Passed bias filter:                      112  (0.0273038); expected 82.0 (0.02)
Passed Vit filter:                        37  (0.00901999); expected 4.1 (0.001)
Passed Fwd filter:                        12  (0.0029254); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.48u 0.19s 00:00:00.67 Elapsed: 00:00:00.82
# Mc/sec: 820.91
//
Query:       MMETSP1137-20121227|6337_1  [L=708]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.8e-33  112.8   0.0    6.3e-33  112.1   0.0    1.3  1  TIGR02311 HpaI: 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase
    3.2e-28   96.8   0.0    7.1e-28   95.7   0.0    1.5  2  TIGR03239 GarL: 2-dehydro-3-deoxyglucarate aldolase
     0.0075   12.6   0.0      0.012   12.0   0.0    1.2  1  TIGR01064 pyruv_kin: pyruvate kinase


Domain annotation for each model (and alignments):
>> TIGR02311  HpaI: 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  112.1   0.0   4.6e-36   6.3e-33       4     188 ..     439     634 ..     437     697 .. 0.80

  Alignments for each domain:
  == domain 1    score: 112.1 bits;  conditional E-value: 4.6e-36
   TIGR02311   4 kqalkekka.qiGlwlgladsyaaeivagaGfdwllldgehapndvrtllsqlqalasyassPvvrpaigdtvl.ikrlldiGaqtllvPmvesaeqaeaavkavryPPkGirGvgsala.....r...asrfnripdylq.qadeeiclllqvetrealenleeiaaveGvdGvfiGPadlaaslGhlGnPshpe 188
                 +++lk +k+  +G  +  +++ aae+va+  +d++l+d++h++ d ++l + lqa+    ++ +vr   +d  + i++ ld+Ga  +lvP  ++a++ ++av+  +yP +G   vg + +     r      f  + dy+  + +e+  +  q+et+ealen+eei +veG+d  fiGP dla+++G + + + p 
  MMETSP1137-20121227|6337_1 439 REKLKSGKTvALGCAINTSSPLAAELVASLDYDFVLIDQQHSAIDPEKLRNLLQAVHCARCHALVRVGGADDRIgIQQALDLGADGILVPCSKTADDIRKAVSCAKYPVRGPGSVGGTRSvflnlRpqlPGGFAGLIDYVVnTGNERAFVAAQIETNEALENIEEICKVEGLDCAFIGPGDLATDMGLVKEFGMPA 634
                 67888877625899999999**********************************************987665544*********************************9998888765321111221113468889999761568888999************************************987666655 PP

>> TIGR03239  GarL: 2-dehydro-3-deoxyglucarate aldolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   0.0       1.2   1.6e+03      72      96 ..      73      97 ..      70     100 .. 0.85
   2 !   95.7   0.0   5.2e-31   7.1e-28       4     186 ..     439     633 ..     437     659 .. 0.85

  Alignments for each domain:
  == domain 1    score: -3.8 bits;  conditional E-value: 1.2
   TIGR03239 72 nepviikrlldigfynllipfvesa 96
                ++pv i  ll +g  n   p  es 
  MMETSP1137-20121227|6337_1 73 DKPVTITSLLPVGDDNSCFPLPESL 97
                579**********999999988875 PP

  == domain 2    score: 95.7 bits;  conditional E-value: 5.2e-31
   TIGR03239   4 rqkllarkt.liglwsalgnpitaevlglagfdwllldgehapndvltlipqlmalkdsasapvvrvp.lnepviikrlldigfynllipfvesaeeaeravaatryppeg......irgvsvaqrsn...rygtvadyf.kkindnitvlvqiesrkgvdavdeiaavdgvdgvfvgpsdlaaalgylgnpnhp 186
                 r+kl+ +kt  +g+ +  ++p++ae++   ++d++l+d +h+  d   l + l+a++ +   ++vrv  +++ + i++ ld+g   +l+p  ++a++ ++av++++yp  g       r v    r +    ++ + dy+ ++ n+   v  qie+++ +++++ei+ v+g+d+ f+gp+dla+ +g + + + p
  MMETSP1137-20121227|6337_1 439 REKLKSGKTvALGCAINTSSPLAAELVASLDYDFVLIDQQHSAIDPEKLRNLLQAVHCARCHALVRVGgADDRIGIQQALDLGADGILVPCSKTADDIRKAVSCAKYPVRGpgsvggTRSVFLNLRPQlpgGFAGLIDYVvNTGNERAFVAAQIETNEALENIEEICKVEGLDCAFIGPGDLATDMGLVKEFGMP 633
                 677777665268******************************************************973678899*********************************7652221115555555554322279999***7256799999*************************************987665555 PP

>> TIGR01064  pyruv_kin: pyruvate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.0   0.0   8.5e-06     0.012     205     251 ..     577     625 ..     573     631 .. 0.83

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 8.5e-06
   TIGR01064 205 vleekgakdvkiiaKiEnqegvknideIikas..dgimvARGDLGveip 251
                 ++ ++g++++ + a iE++e+++ni+eI k+   d   +  GDL  ++ 
  MMETSP1137-20121227|6337_1 577 YVVNTGNERAFVAAQIETNEALENIEEICKVEglDCAFIGPGDLATDMG 625
                 666789999*******************987444889999999877665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (708 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       103  (0.0251097); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.48u 0.14s 00:00:00.62 Elapsed: 00:00:00.50
# Mc/sec: 1868.97
//
Query:       MMETSP1137-20121227|6338_1  [L=323]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (323 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        99  (0.0241346); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.15s 00:00:00.41 Elapsed: 00:00:00.35
# Mc/sec: 1218.07
//
Query:       MMETSP1137-20121227|6339_1  [L=123]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.14    9.7   4.7       0.11   10.0   0.5    1.9  2  TIGR02743 TraW: type-F conjugative transfer system protein TraW
       0.47    9.2   5.4       0.54    9.0   3.0    1.6  1  TIGR01682 moaD: molybdopterin converting factor, subunit 1


Domain annotation for each model (and alignments):
>> TIGR02743  TraW: type-F conjugative transfer system protein TraW
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.5   5.4e-05      0.11      26      61 ..      14      49 ..       3      59 .. 0.82
   2 ?    1.7   0.3     0.019        38      31      85 ..      54     108 ..      51     113 .. 0.76

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 5.4e-05
   TIGR02743 26 GetfpiaEkdllevieqrlkeleqsgelkklqqelk 61
                 +  +i+E++l++  ++ l++l+++++lk+ + +++
  MMETSP1137-20121227|6339_1 14 AQQASIKEQKLIQAAKNELEALQHEADLKQQKAAAA 49
                57789***********************99876544 PP

  == domain 2    score: 1.7 bits;  conditional E-value: 0.019
   TIGR02743  31 iaEkdllevieqrlkeleqsgelkklqqelkervaesvkrPppvkglsttetakt 85 
                 i+E++l    +++ ++l+   e+k++   l++ +  + ++P  + ++ t ++ +t
  MMETSP1137-20121227|6339_1  54 IKEHELALEQRRNEEQLRMMREMKQVGVDLTKVLVSQHEQPDKILKIDTSDSHRT 108
                 6666665555555566777889999999999999999999999999999888877 PP

>> TIGR01682  moaD: molybdopterin converting factor, subunit 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   3.0   0.00026      0.54      10      68 ..       7      64 ..       4      67 .. 0.85

  Alignments for each domain:
  == domain 1    score: 9.0 bits;  conditional E-value: 0.00026
   TIGR01682 10 rekagtdeetlelpdevttveelkellakegpellesrkqvrvAvneeyvedeallkeg 68
                + ++  ++++ +++++ +  ++ k+ l++ + e+  ++++   Avn+e+ e+e +l+++
  MMETSP1137-20121227|6339_1  7 KTELSLTAQQASIKEQ-KLIQAAKNELEALQHEADLKQQKAAAAVNMEIKEHELALEQR 64
                5566777888999966.999999999999999999999*************99999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (123 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       587  (0.143101); expected 82.0 (0.02)
Passed bias filter:                      242  (0.0589956); expected 82.0 (0.02)
Passed Vit filter:                        23  (0.00560702); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.22u 0.14s 00:00:00.36 Elapsed: 00:00:00.36
# Mc/sec: 450.96
//
Query:       MMETSP1137-20121227|6340_1  [L=207]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (207 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        93  (0.0226719); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.10s 00:00:00.31 Elapsed: 00:00:00.39
# Mc/sec: 700.56
//
Query:       MMETSP1137-20121227|6341_1  [L=82]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (82 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       124  (0.0302292); expected 82.0 (0.02)
Passed bias filter:                      118  (0.0287665); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.13s 00:00:00.26 Elapsed: 00:00:00.26
# Mc/sec: 416.27
//
Query:       MMETSP1137-20121227|6342_1  [L=109]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (109 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        70  (0.0170648); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.15s 00:00:00.34 Elapsed: 00:00:00.27
# Mc/sec: 532.84
//
Query:       MMETSP1137-20121227|6343_1  [L=50]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (50 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        96  (0.0234032); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.17s 00:00:00.29 Elapsed: 00:00:00.43
# Mc/sec: 153.48
//
Query:       MMETSP1137-20121227|6344_1  [L=216]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (216 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        44  (0.0107265); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.11s 00:00:00.30 Elapsed: 00:00:00.46
# Mc/sec: 619.77
//
Query:       MMETSP1137-20121227|6345_1  [L=541]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0027   14.6   0.3     0.0044   13.9   0.2    1.2  1  TIGR02066 dsrB: sulfite reductase, dissimilatory-type beta subunit
     0.0029   15.1   1.4      0.005   14.3   1.0    1.3  1  TIGR01971 NuoI: NADH-quinone oxidoreductase, chain I
      0.009   14.0   1.7      0.017   13.1   1.2    1.4  1  TIGR02179 PorD_KorD: 2-oxoacid:acceptor oxidoreductase, delta subunit, pyruvate/2-ketoisovalerate family
  ------ inclusion threshold ------
      0.012   13.5   0.6       0.02   12.8   0.4    1.2  1  TIGR02951 DMSO_dmsB: dimethylsulfoxide reductase, chain B
      0.022   12.8   0.2      0.054   11.6   0.1    1.6  1  TIGR03048 PS_I_psaC: photosystem I iron-sulfur protein PsaC
      0.023   11.8   0.3      0.049   10.7   0.2    1.5  1  TIGR03467 HpnE: squalene-associated FAD-dependent desaturase
       0.04   10.5   0.4      0.056   10.0   0.3    1.1  1  TIGR03379 glycerol3P_GlpC: glycerol-3-phosphate dehydrogenase, anaerobic, C subunit
      0.061    9.8   1.3      0.086    9.3   0.9    1.1  1  TIGR04105 FeFe_hydrog_B1: [FeFe] hydrogenase, group B1/B3


Domain annotation for each model (and alignments):
>> TIGR02066  dsrB: sulfite reductase, dissimilatory-type beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.2   8.5e-06    0.0044     192     232 ..     485     526 ..     471     532 .. 0.89

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 8.5e-06
   TIGR02066 192 acPtaalkpk.eekekkslevdeekcilcGncytncpaldla 232
                  cP++  +   e++++++l+++ + ci c +c  +cp+ +++
  MMETSP1137-20121227|6345_1 485 FCPAGVYEYItEDGREPRLQINAQNCIHCKTCDIKCPSQNID 526
                 599999887636999**********************98875 PP

>> TIGR01971  NuoI: NADH-quinone oxidoreductase, chain I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   1.0   9.7e-06     0.005      72      98 ..     499     525 ..     483     529 .. 0.75

  Alignments for each domain:
  == domain 1    score: 14.3 bits;  conditional E-value: 9.7e-06
   TIGR01971  72 rlkkyeinlgrCifCglCeevCPtdai 98 
                 r  + +in  +Ci+C  C+  CP + i
  MMETSP1137-20121227|6345_1 499 REPRLQINAQNCIHCKTCDIKCPSQNI 525
                 445679*****************9987 PP

>> TIGR02179  PorD_KorD: 2-oxoacid:acceptor oxidoreductase, delta subunit, pyruvate/2-ketoisovalerate family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.1   1.2   3.3e-05     0.017      14      44 ..     497     527 ..     486     532 .. 0.81

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 3.3e-05
   TIGR02179  14 sWrvlkPvvdkekCikCklCvlyCpeaaike 44 
                 + r  +  ++ + Ci+Ck+C + Cp + i++
  MMETSP1137-20121227|6345_1 497 DGREPRLQINAQNCIHCKTCDIKCPSQNIDW 527
                 556666678999**************99976 PP

>> TIGR02951  DMSO_dmsB: dimethylsulfoxide reductase, chain B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.4   3.8e-05      0.02      74     110 ..     484     523 ..     474     531 .. 0.83

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 3.8e-05
   TIGR02951  74 kacptgamykreedGl...vlvdqdkciGckycalacpyg 110
                 + cp+g  +  +edG    ++++ ++ci ck+c ++cp +
  MMETSP1137-20121227|6345_1 484 RFCPAGVYEYITEDGReprLQINAQNCIHCKTCDIKCPSQ 523
                 56999999888888853337999**************975 PP

>> TIGR03048  PS_I_psaC: photosystem I iron-sulfur protein PsaC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.1    0.0001     0.054      18      61 ..     484     524 ..     478     530 .. 0.84

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 0.0001
   TIGR03048  18 racptdvlemvpwdGckakqiasaprtedcvGckrcesacptdf 61 
                 r cp+ v e +  dG           +++c+ ck c+  cp++ 
  MMETSP1137-20121227|6345_1 484 RFCPAGVYEYITEDGREPRLQIN---AQNCIHCKTCDIKCPSQN 524
                 78*************98764433...479************875 PP

>> TIGR03467  HpnE: squalene-associated FAD-dependent desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.2   9.5e-05     0.049       9      39 ..       1      37 [.       1      47 [. 0.84

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 9.5e-05
   TIGR03467  9 AGLaAAveLaraG......vrvtllEarrqlGGRars 39
                AGLaAA++L +        +rvtllE + qlGG   s
  MMETSP1137-20121227|6345_1  1 AGLAAAIRLKQLCneagvdYRVTLLEKATQLGGHTLS 37
                9********87555555889*************8766 PP

>> TIGR03379  glycerol3P_GlpC: glycerol-3-phosphate dehydrogenase, anaerobic, C subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.3   0.00011     0.056      11      67 ..     463     523 ..     453     528 .. 0.72

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 0.00011
   TIGR03379  11 tvctvvcpvakanplypgpkqa.gpdgerlrl....ksaelydealkyctnckrcevacpsd 67 
                 t    + pv ++   y gp q   p g    +    +++ l  +  + c+ ck c++ cps+
  MMETSP1137-20121227|6345_1 463 TLKNDAVPVERNYAIYDGPEQRfCPAGVYEYItedgREPRLQIN-AQNCIHCKTCDIKCPSQ 523
                 555667899999999***99853788877666212223444444.578************96 PP

>> TIGR04105  FeFe_hydrog_B1: [FeFe] hydrogenase, group B1/B3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   0.9   0.00017     0.086     175     203 ..     494     523 ..     476     527 .. 0.72

  Alignments for each domain:
  == domain 1    score: 9.3 bits;  conditional E-value: 0.00017
   TIGR04105 175 issd.ekkkaeidedkCisCGaCvaaCPFg 203
                 i+ d ++ + +i+ ++Ci+C +C  +CP  
  MMETSP1137-20121227|6345_1 494 ITEDgREPRLQINAQNCIHCKTCDIKCPSQ 523
                 4444356678999999*******9999965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (541 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       107  (0.0260848); expected 82.0 (0.02)
Passed bias filter:                      104  (0.0253535); expected 82.0 (0.02)
Passed Vit filter:                        35  (0.00853242); expected 4.1 (0.001)
Passed Fwd filter:                         8  (0.00195027); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.42u 0.12s 00:00:00.54 Elapsed: 00:00:00.74
# Mc/sec: 964.95
//
Query:       MMETSP1137-20121227|6348_1  [L=227]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (227 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.15s 00:00:00.35 Elapsed: 00:00:00.38
# Mc/sec: 788.46
//
Query:       MMETSP1137-20121227|6349_1  [L=49]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (49 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        24  (0.0058508); expected 82.0 (0.02)
Passed bias filter:                       22  (0.00536324); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.18s 00:00:00.28 Elapsed: 00:00:00.45
# Mc/sec: 143.72
//
Query:       MMETSP1137-20121227|6350_1  [L=225]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (225 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        62  (0.0151146); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.18s 00:00:00.38 Elapsed: 00:00:00.60
# Mc/sec: 494.96
//
Query:       MMETSP1137-20121227|6353_1  [L=58]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        41  (0.00999512); expected 82.0 (0.02)
Passed bias filter:                       41  (0.00999512); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.14s 00:00:00.26 Elapsed: 00:00:00.25
# Mc/sec: 306.21
//
Query:       MMETSP1137-20121227|6356_1  [L=110]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.036   10.7   0.0      0.048   10.3   0.0    1.1  1  TIGR01525 ATPase-IB_hvy: heavy metal translocating P-type ATPase


Domain annotation for each model (and alignments):
>> TIGR01525  ATPase-IB_hvy: heavy metal translocating P-type ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   1.2e-05     0.048     394     431 ..      27      65 ..      24      73 .. 0.84

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 1.2e-05
   TIGR01525 394 eaiaeLkkkg..ievvlltGDnrsaaeavAkelgiidevv 431
                 e i+eL++ g    ++++tGD r++++++Ake  i d v+
  MMETSP1137-20121227|6356_1  27 ELIKELRAHGfkGLTCIVTGDSRERVAQLAKEPDI-DIVI 65 
                 789***9999976789***************9886.5555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (110 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        79  (0.0192589); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.17u 0.17s 00:00:00.34 Elapsed: 00:00:00.37
# Mc/sec: 392.40
//
Query:       MMETSP1137-20121227|6359_1  [L=145]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (145 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        63  (0.0153584); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.16s 00:00:00.34 Elapsed: 00:00:00.26
# Mc/sec: 736.09
//
Query:       MMETSP1137-20121227|6360_1  [L=238]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (238 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        54  (0.0131643); expected 82.0 (0.02)
Passed bias filter:                       44  (0.0107265); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.15s 00:00:00.35 Elapsed: 00:00:00.36
# Mc/sec: 872.59
//
Query:       MMETSP1137-20121227|6362_1  [L=63]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (63 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        60  (0.014627); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.15s 00:00:00.27 Elapsed: 00:00:00.27
# Mc/sec: 307.97
//
Query:       MMETSP1137-20121227|6363_1  [L=585]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (585 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        78  (0.0190151); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.14s 00:00:00.51 Elapsed: 00:00:00.47
# Mc/sec: 1642.84
//
Query:       MMETSP1137-20121227|6364_1  [L=418]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (418 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       257  (0.0626524); expected 82.0 (0.02)
Passed bias filter:                      109  (0.0265724); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.16s 00:00:00.49 Elapsed: 00:00:00.39
# Mc/sec: 1414.65
//
Query:       MMETSP1137-20121227|6365_1  [L=734]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00015   18.8   0.0      0.014   12.4   0.0    2.3  2  TIGR02993 ectoine_eutD: ectoine utilization protein EutD
    0.00038   17.9   0.0    0.00076   16.9   0.0    1.5  1  TIGR00500 met_pdase_I: methionine aminopeptidase, type I


Domain annotation for each model (and alignments):
>> TIGR02993  ectoine_eutD: ectoine utilization protein EutD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.1   0.0    0.0022       4.5       7      38 ..      98     128 ..      94     150 .. 0.80
   2 !   12.4   0.0   6.7e-06     0.014     245     366 ..     513     636 ..     411     648 .. 0.81

  Alignments for each domain:
  == domain 1    score: 4.1 bits;  conditional E-value: 0.0022
   TIGR02993   7 treeyaar.laktraemekrgidllivtdpsnm 38 
                 t++e aar la +r++m+++g+d liv  ps  
  MMETSP1137-20121227|6365_1  98 TKQEVAARkLAAIREQMQANGVDALIV--PSGD 128
                 5667766549****************9..4444 PP

  == domain 2    score: 12.4 bits;  conditional E-value: 6.7e-06
   TIGR02993 245 ffeiagvykryhvplsrtvflgkptqafldaekavlegleaglevakpgntcediakaff.avlkkygiekdsrtgypiglsyppdwgertmslrpgdktvlkpgmtfhfmtglwl.edlglei 366
                 +++  g y+   + ++rtv+lg pt    ++   vl+g  a   v  p  t +   +af  + l + g+     tg+ +g +     g +++s r +++  lk+gm +   +g +  + +g+ i
  MMETSP1137-20121227|6365_1 513 LLDSGGQYETGTTDVTRTVHLGTPTAWQKECFTRVLKGNIALDMVVFPEGTPGPAIDAFArTALWQVGLDYLHGTGHGVGAALNVHEGPQSISTRYANTVALKEGMVLSNEPGYYEaNAFGVRI 636
                 45667889999999************************9887777888888888888886246899999999***********************************99998877414456555 PP

>> TIGR00500  met_pdase_I: methionine aminopeptidase, type I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.0   3.7e-07   0.00076      33     201 ..     453     624 ..     417     645 .. 0.67

  Alignments for each domain:
  == domain 1    score: 16.9 bits;  conditional E-value: 3.7e-07
   TIGR00500  33 GvstkeldkiakdfiekkgAksafkgykgfpgsvCiSvNevviHG...ipd.kkvlkdgDivniDvgveldGyygDtaktllvgkvseeaeklleatkealkkaieeikvgkrikeiskaiektaeekgfsvvkey...tGHGiGr..klHeepeilnyakketnvrlkeGmviaiEP 201
                 G s++e  ++a++    + A++ f+++  fp    +  N  +iH    +++    ++   ++ +D g +++   +D+++t+ +g  ++ ++   e+    lk  i+   v    +  + ai+++a++  ++v  +y   tGHG+G   ++He p+ +      + v lkeGmv++ EP
  MMETSP1137-20121227|6365_1 453 GNSLTEA-ELATRLAGFRAAQPGFLDL-SFPTIAGANANGAIIHYnplVAEnPATVNSETMLLLDSGGQYETGTTDVTRTVHLGTPTAWQK---ECFTRVLKGNIALDMVVFPEGTPGPAIDAFARTALWQVGLDYlhgTGHGVGAalNVHEGPQSISTR-YANTVALKEGMVLSNEP 624
                 5555554.3566666667777888765.699999999999999963334554556777778889999999999999999999999776554...3444455555554455555566667777777777777666664548*****83357****655433.334689********999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (734 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       135  (0.0329108); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.16s 00:00:00.65 Elapsed: 00:00:00.30
# Mc/sec: 3229.33
//
Query:       MMETSP1137-20121227|6366_1  [L=355]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (355 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        93  (0.0226719); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.16s 00:00:00.44 Elapsed: 00:00:00.31
# Mc/sec: 1511.49
//
Query:       MMETSP1137-20121227|6367_1  [L=81]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (81 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        72  (0.0175524); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.15s 00:00:00.27 Elapsed: 00:00:00.27
# Mc/sec: 395.97
//
Query:       MMETSP1137-20121227|6368_1  [L=72]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        27  (0.00658216); expected 82.0 (0.02)
Passed bias filter:                       27  (0.00658216); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.15s 00:00:00.27 Elapsed: 00:00:00.25
# Mc/sec: 380.13
//
Query:       MMETSP1137-20121227|6370_1  [L=107]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (107 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       126  (0.0307167); expected 82.0 (0.02)
Passed bias filter:                      107  (0.0260848); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.15s 00:00:00.31 Elapsed: 00:00:00.30
# Mc/sec: 470.76
//
Query:       MMETSP1137-20121227|6372_1  [L=411]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (411 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       189  (0.0460751); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.13s 00:00:00.43 Elapsed: 00:00:00.47
# Mc/sec: 1154.20
//
Query:       MMETSP1137-20121227|6374_1  [L=341]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0091   13.4   8.0      0.095   10.1   0.5    3.5  5  TIGR01944 rnfB: electron transport complex, RnfABCDGE type, B subunit
     0.0093   12.8   0.7        1.7    5.3   0.1    2.7  3  TIGR00512 salvage_mtnA: S-methyl-5-thioribose-1-phosphate isomerase


Domain annotation for each model (and alignments):
>> TIGR01944  rnfB: electron transport complex, RnfABCDGE type, B subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    3.6   0.0    0.0044       9.1      56      90 ..      95     134 ..      92     143 .. 0.59
   2 !    3.4   0.1    0.0053        11      46      71 ..     114     140 ..     104     171 .. 0.72
   3 !    4.0   0.1    0.0033       6.7      46      68 ..     201     223 ..     169     230 .. 0.70
   4 !   10.1   0.5   4.6e-05     0.095      46      92 ..     201     252 ..     191     257 .. 0.76
   5 !    8.0   0.1    0.0002      0.42      44      82 ..     228     266 ..     224     286 .. 0.78

  Alignments for each domain:
  == domain 1    score: 3.6 bits;  conditional E-value: 0.0044
   TIGR01944  56 GCrpyaeaiaegea.....inkCpPGGeavieklaellgv 90 
                 GC+ +ae +a+++      +  C   G+++ ++lae l  
  MMETSP1137-20121227|6374_1  95 GCKALAEGLASNQXltsldLSDCKAIGNDGFKALAEGLAS 134
                 7777777777766421111345777777777777765544 PP

  == domain 2    score: 3.4 bits;  conditional E-value: 0.0053
   TIGR01944  46 qtqCgqCGypGCrpyaeaiaegea.in 71 
                  ++C + G +G + +ae +a++ea + 
  MMETSP1137-20121227|6374_1 114 LSDCKAIGNDGFKALAEGLASNEAlLS 140
                 589*******************99533 PP

  == domain 3    score: 4.0 bits;  conditional E-value: 0.0033
   TIGR01944  46 qtqCgqCGypGCrpyaeaiaege 68 
                  ++C + G +GC+ +ae + +++
  MMETSP1137-20121227|6374_1 201 LSRCNRIGDDGCKALAEGLKSNK 223
                 46677777777777777766554 PP

  == domain 4    score: 10.1 bits;  conditional E-value: 4.6e-05
   TIGR01944  46 qtqCgqCGypGCrpyaeaiaegea...ink..CpPGGeavieklaellgvek 92 
                  ++C + G +GC+ +ae + +++    +++  C   G+++ ++lae+l+ +k
  MMETSP1137-20121227|6374_1 201 LSRCNRIGDDGCKALAEGLKSNKTltsLDAscCGRIGDEGCKALAEVLKTNK 252
                 5789999999999999999998763222323266779999999999998764 PP

  == domain 5    score: 8.0 bits;  conditional E-value: 0.0002
   TIGR01944  44 LPqtqCgqCGypGCrpyaeaiaegeainkCpPGGeavie 82 
                 L ++ Cg+ G +GC+ +ae + +++a++     G+ +++
  MMETSP1137-20121227|6374_1 228 LDASCCGRIGDEGCKALAEVLKTNKALTSLKITGNFITT 266
                 56789*****************99998877666665554 PP

>> TIGR00512  salvage_mtnA: S-methyl-5-thioribose-1-phosphate isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.5   0.0    0.0014       2.9     110     151 ..      96     137 ..      28     154 .. 0.62
   2 ?    1.0   0.0     0.018        36     116     159 ..     160     205 ..     143     208 .. 0.78
   3 !    5.3   0.1   0.00082       1.7     119     162 ..     192     235 ..     181     258 .. 0.79

  Alignments for each domain:
  == domain 1    score: 4.5 bits;  conditional E-value: 0.0014
   TIGR00512 110 kelkealleeaeeileedleanrkigelgaellkkkaakkek 151
                  ++ ++ l+  + +++ dl+++++ig+ g + l ++ a++e+
  MMETSP1137-20121227|6374_1  96 CKALAEGLASNQXLTSLDLSDCKAIGNDGFKALAEGLASNEA 137
                 34445556677889999*****************99977654 PP

  == domain 2    score: 1.0 bits;  conditional E-value: 0.018
   TIGR00512 116 lleeaeeileedleanrkigelgaellkkkaakkekltv..LthCN 159
                 +l+  +++++ dl+ +++i ++g++ + ++ +++++l    L  CN
  MMETSP1137-20121227|6374_1 160 CLKSNRALTKIDLSGCHRILDNGCKAIGEGLTTNQALMSldLSRCN 205
                 56777889999****************9999877665431345666 PP

  == domain 3    score: 5.3 bits;  conditional E-value: 0.00082
   TIGR00512 119 eaeeileedleanrkigelgaellkkkaakkekltvLthCNtGs 162
                 + +++++ dl+ +++ig+ g++ l ++ +++++lt L     G 
  MMETSP1137-20121227|6374_1 192 TNQALMSLDLSRCNRIGDDGCKALAEGLKSNKTLTSLDASCCGR 235
                 56788999999*************99998888887776555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (341 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        87  (0.0212092); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.30u 0.11s 00:00:00.41 Elapsed: 00:00:00.49
# Mc/sec: 918.54
//
Query:       MMETSP1137-20121227|6375_1  [L=209]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (209 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       154  (0.0375427); expected 82.0 (0.02)
Passed bias filter:                      105  (0.0255973); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.17s 00:00:00.36 Elapsed: 00:00:00.41
# Mc/sec: 672.82
//
Query:       MMETSP1137-20121227|6376_1  [L=84]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (84 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        34  (0.00828864); expected 82.0 (0.02)
Passed bias filter:                       33  (0.00804486); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.13s 00:00:00.27 Elapsed: 00:00:00.26
# Mc/sec: 426.43
//
Query:       MMETSP1137-20121227|6377_1  [L=179]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (179 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        39  (0.00950756); expected 82.0 (0.02)
Passed bias filter:                       38  (0.00926377); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.14s 00:00:00.30 Elapsed: 00:00:00.38
# Mc/sec: 621.74
//
Query:       MMETSP1137-20121227|6378_1  [L=217]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (217 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       221  (0.0538762); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.14s 00:00:00.34 Elapsed: 00:00:00.34
# Mc/sec: 842.40
//
Query:       MMETSP1137-20121227|6379_1  [L=245]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (245 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        84  (0.0204778); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.16s 00:00:00.37 Elapsed: 00:00:00.32
# Mc/sec: 1010.54
//
Query:       MMETSP1137-20121227|6380_1  [L=347]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (347 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        58  (0.0141394); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.15s 00:00:00.39 Elapsed: 00:00:00.40
# Mc/sec: 1145.01
//
Query:       MMETSP1137-20121227|6381_1  [L=460]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (460 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        65  (0.0158459); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.28s 00:00:00.48 Elapsed: 00:00:00.63
# Mc/sec: 963.73
//
Query:       MMETSP1137-20121227|6384_1  [L=33]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (33 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        54  (0.0131643); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.25
# Mc/sec: 174.23
//
Query:       MMETSP1137-20121227|6385_1  [L=237]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (237 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        83  (0.020234); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.16s 00:00:00.39 Elapsed: 00:00:00.38
# Mc/sec: 823.20
//
Query:       MMETSP1137-20121227|6386_1  [L=473]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (473 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       125  (0.0304729); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.15s 00:00:00.47 Elapsed: 00:00:00.49
# Mc/sec: 1274.10
//
Query:       MMETSP1137-20121227|6388_1  [L=71]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (71 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        30  (0.00731351); expected 82.0 (0.02)
Passed bias filter:                       26  (0.00633837); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.17s 00:00:00.29 Elapsed: 00:00:00.33
# Mc/sec: 283.98
//
Query:       MMETSP1137-20121227|6389_1  [L=131]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (131 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       108  (0.0263286); expected 82.0 (0.02)
Passed bias filter:                      101  (0.0246221); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.13s 00:00:00.30 Elapsed: 00:00:00.32
# Mc/sec: 540.33
//
Query:       MMETSP1137-20121227|6390_1  [L=508]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.025   11.1   0.1      0.048   10.2   0.0    1.4  1  TIGR00437 feoB: ferrous iron transport protein B


Domain annotation for each model (and alignments):
>> TIGR00437  feoB: ferrous iron transport protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   1.2e-05     0.048     450     481 ..     439     470 ..     402     484 .. 0.89

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 1.2e-05
   TIGR00437 450 imElppyrlPslksvliktwerlksflkkagt 481
                 i+E+  y +P+++ v+ ++we l +f+ ++g+
  MMETSP1137-20121227|6390_1 439 IVEVAYYNMPRVRLVWARIWEVLGEFFTEVGQ 470
                 89**************************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (508 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       156  (0.0380302); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.16s 00:00:00.51 Elapsed: 00:00:00.35
# Mc/sec: 1915.73
//
Query:       MMETSP1137-20121227|6392_1  [L=76]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (76 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        67  (0.0163335); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.31
# Mc/sec: 323.59
//
Query:       MMETSP1137-20121227|6393_1  [L=88]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (88 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        63  (0.0153584); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.15s 00:00:00.29 Elapsed: 00:00:00.28
# Mc/sec: 400.52
//
Query:       MMETSP1137-20121227|6394_1  [L=170]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (170 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        57  (0.0138957); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.11s 00:00:00.28 Elapsed: 00:00:00.28
# Mc/sec: 801.36
//
Query:       MMETSP1137-20121227|6396_1  [L=71]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (71 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        75  (0.0182838); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.28
# Mc/sec: 334.69
//
Query:       MMETSP1137-20121227|6397_1  [L=294]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (294 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        85  (0.0207216); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.14s 00:00:00.37 Elapsed: 00:00:00.42
# Mc/sec: 923.92
//
Query:       MMETSP1137-20121227|6398_1  [L=278]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.1e-11   39.9   0.1    9.3e-10   36.1   0.1    2.1  1  TIGR03162 ribazole_cobC: alpha-ribazole phosphatase
    0.00046   17.5   0.9      0.013   12.7   0.6    2.1  1  TIGR03848 MSMEG_4193: probable phosphomutase, MSMEG_4193 family


Domain annotation for each model (and alignments):
>> TIGR03162  ribazole_cobC: alpha-ribazole phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.1   0.1   4.5e-13   9.3e-10      18     169 ..      74     253 ..      54     262 .. 0.78

  Alignments for each domain:
  == domain 1    score: 36.1 bits;  conditional E-value: 4.5e-13
   TIGR03162  18 GqtDvpLaekgeeqaaalrekl......edvkfdavvsSplsRcrelAella.........................eklklpiekddrLrEmdfGdwEgksydeisekypeldawakdla..harvpgGEsvadfsqRveefleelake.ekenvlivtHgGvirallahllglpleqllsieve 169
                 G t  +L++ g+ qa++++++l      e+   ++ +sS+ +R+ ++Ae                            ++l+  ++  +  rE  fGd++g   ++ ++       w +dl+  ++++ g Esv+d+++R  e++ ++ ++ ++ ++++v+H+ +++++ ++l g+ l+++ls++++
  MMETSP1137-20121227|6398_1  74 GTTMHGLTALGRLQARRAATTLvdlvgrENLGSTHFYSSDFTRALQTAEEALagvinlleyensvetddslelpalpSSLTDGVKVTPLVRERYFGDFDGTVLSNYQQV------WPRDLVsaQHTTFGVESVQDVTRRLRECILQMEEQhDGCTIVLVSHADTLQIAQCYLAGAXLQNVLSVQIQ 253
                 6666677777777777777777666666667777788999999988887655688888899999999988888888777788889999*************99998888......656654114556689********************888999************************998876 PP

>> TIGR03848  MSMEG_4193: probable phosphomutase, MSMEG_4193 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.7   0.6   6.5e-06     0.013       5     170 ..      54     246 ..      52     256 .. 0.59

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 6.5e-06
   TIGR03848   5 vrhgrstantaktLaGr.tpGv...eLderGreqaaalaerladl......piaaivssPlercretveaiaear......glevavderlt..evdYGdWtGrelkeLakeeLwkvvqa...hpsaavfPgGealaevqaravaavreldarle......eehgpdavwvavshgDviksvladalGlhlDl 170
                 +rhg+s an+a++++   + G     L+  Gr qa+++a+ l dl        ++ +ss ++r+ +t+e+ ++        + +v++d++l+         +G +++ L++e  +             v+P+    a+  +  v++v++  +rl       ee +++ ++v+vsh+D ++ +  +  G  l +
  MMETSP1137-20121227|6398_1  54 LRHGQSEANVAGIISSDpSIGTtmhGLTALGRLQARRAATTLVDLvgrenlGSTHFYSSDFTRALQTAEEALAGVinlleyENSVETDDSLElpALPSSLTDGVKVTPLVRERYFGDFDGtvlSNYQQVWPRDLVSAQHTTFGVESVQDVTRRLRecilqmEEQHDGCTIVLVSHADTLQIAQCYLAGAXLQN 246
                 6888888888888865323343111477888999988888887652211114567888999999999877655544666664444455554411233334456666666666665433320002334566666666666666666666666665412222235689999*********999988888887766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (278 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        99  (0.0241346); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.26u 0.16s 00:00:00.42 Elapsed: 00:00:00.28
# Mc/sec: 1310.46
//
Query:       MMETSP1137-20121227|6399_1  [L=498]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (498 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        67  (0.0163335); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.14s 00:00:00.47 Elapsed: 00:00:00.60
# Mc/sec: 1095.51
//
Query:       MMETSP1137-20121227|6400_1  [L=193]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.9e-45  151.4   0.2    6.9e-45  151.1   0.1    1.0  1  TIGR02819 fdhA_non_GSH: formaldehyde dehydrogenase, glutathione-independent
      9e-09   32.9   1.9    1.2e-08   32.4   1.3    1.1  1  TIGR03989 Rxyl_3153: oxidoreductase, Rxyl_3153 family
      4e-08   30.5   0.5    5.5e-08   30.0   0.3    1.2  1  TIGR00692 tdh: L-threonine 3-dehydrogenase
    3.9e-07   27.4   3.9    9.1e-07   26.2   2.7    1.5  1  TIGR03366 HpnZ_proposed: putative phosphonate catabolism associated alcohol dehydrogenase
      3e-05   20.8   1.0    4.1e-05   20.4   0.7    1.1  1  TIGR03451 mycoS_dep_FDH: mycothiol-dependent formaldehyde dehydrogenase
      0.007   13.3   0.6      0.009   12.9   0.4    1.1  1  TIGR02818 adh_III_F_hyde: S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase


Domain annotation for each model (and alignments):
>> TIGR02819  fdhA_non_GSH: formaldehyde dehydrogenase, glutathione-independent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  151.1   0.1     1e-47   6.9e-45       2     113 ..      78     192 ..      77     193 .] 0.96

  Alignments for each domain:
  == domain 1    score: 151.1 bits;  conditional E-value: 1e-47
   TIGR02819   2 gnkgvvylgagkvevqdidypklelkeg.......nvarkvehgvilkvvttnicgsdqhmvrgrttaeag.lvlgheitgevievgrdveflkigdivsvpfniacgrcrsckekktgv 113
                 +n+gvvy+g+g+vev+ i++pklel++         ++rk+ehg ilkvvttnicgsdqhmvrgrt+ + g +vlgheitg      rdve+++ gd++svpfniacgrc +ck  +tgv
  MMETSP1137-20121227|6400_1  78 TNRGVVYMGPGEVEVRPIAFPKLELDSTsspvpseRQKRKCEHGAILKVVTTNICGSDQHMVRGRTSLPGGyMVLGHEITGX-----RDVEYIRNGDLCSVPFNIACGRCPACKRGDTGV 192
                 69**********************99988899988889******************************99868********6.....9******************************98 PP

>> TIGR03989  Rxyl_3153: oxidoreductase, Rxyl_3153 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.4   1.3   1.8e-11   1.2e-08      31     102 ..     124     190 ..     115     192 .. 0.92

  Alignments for each domain:
  == domain 1    score: 32.4 bits;  conditional E-value: 1.8e-11
   TIGR03989  31 vklaasGlChsdehlvtGdlplekyPvvgGheGaGvvekvGpgvtelkeGdhvvlsfipaCGrCrlCakGlq 102
                 +k++++ +C sd+h+v G ++l+   +v Ghe +G       +v+ +++Gd   + f  aCGrC++C++G +
  MMETSP1137-20121227|6400_1 124 LKVVTTNICGSDQHMVRGRTSLPGGYMVLGHEITGX-----RDVEYIRNGDLCSVPFNIACGRCPACKRGDT 190
                 68999******************9999*****9996.....79**************************975 PP

>> TIGR00692  tdh: L-threonine 3-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.0   0.3     8e-11   5.5e-08      23     103 ..     119     191 ..     103     193 .] 0.84

  Alignments for each domain:
  == domain 1    score: 30.0 bits;  conditional E-value: 8e-11
   TIGR00692  23 knevlikvkatsicGtdvhiynwdewaqkrikv.pqvlGhevaGevvgiGeevegvkvGdyvsaethivcGkcvacrrGksh 103
                 ++  ++kv +t icG+d h+       +  ++   +vlGhe++G      ++ve ++ Gd  s+   i cG+c ac+rG + 
  MMETSP1137-20121227|6400_1 119 EHGAILKVVTTNICGSDQHMVR----GRTSLPGgYMVLGHEITGX-----RDVEYIRNGDLCSVPFNIACGRCPACKRGDTG 191
                 456688*************986....455665415899*****96.....79***************************876 PP

>> TIGR03366  HpnZ_proposed: putative phosphonate catabolism associated alcohol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.2   2.7   1.3e-09   9.1e-07       8      84 ..     122     188 ..     116     191 .. 0.84

  Alignments for each domain:
  == domain 1    score: 26.2 bits;  conditional E-value: 1.3e-09
   TIGR03366   8 vlvrvllatvCGsdlhtvaGrregkl.psvlGheavGevvalgseeaaavdgeklavGqRvvwsvavsCgrCerCrrg 84 
                 ++++v ++ +CGsd+h v+Gr + +    vlGhe+ G      +      d e ++ G+       ++CgrC  C+rg
  MMETSP1137-20121227|6400_1 122 AILKVVTTNICGSDQHMVRGRTSLPGgYMVLGHEITGX-----R------DVEYIRNGDLCSVPFNIACGRCPACKRG 188
                 567999****************98862589****9884.....2......3368999999999999**********98 PP

>> TIGR03451  mycoS_dep_FDH: mycothiol-dependent formaldehyde dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   0.7     6e-08   4.1e-05      28     100 ..     121     189 ..     114     192 .. 0.88

  Alignments for each domain:
  == domain 1    score: 20.4 bits;  conditional E-value: 6e-08
   TIGR03451  28 evvvkiqacgvchtdlayreggisdefpf.llgheaagvveavgegvtdvepgdyvvlnwravcgecrackrgr 100
                  ++ k+ ++ +c +d +   g  s    + +lghe +g       +v+ ++ gd   + +  +cg+c ackrg 
  MMETSP1137-20121227|6400_1 121 GAILKVVTTNICGSDQHMVRGRTSLPGGYmVLGHEITGX-----RDVEYIRNGDLCSVPFNIACGRCPACKRGD 189
                 68899***************998876655269*****96.....6899************************97 PP

>> TIGR02818  adh_III_F_hyde: S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.9   0.4   1.3e-05     0.009      29     103 ..     122     191 ..     111     193 .] 0.85

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 1.3e-05
   TIGR02818  29 vlvrivatgvchtdaftlsgadpegvfpvilghegagiveavgegvtslkvgdhviplytaecgeckfcksgktn 103
                  ++++v+t +c +d + + g  +     ++lghe +g        v  +++gd     +   cg+c  ck g t 
  MMETSP1137-20121227|6400_1 122 AILKVVTTNICGSDQHMVRGRTSLPGGYMVLGHEITGX-----RDVEYIRNGDLCSVPFNIACGRCPACKRGDTG 191
                 4789****************998777779*****9996.....568899****987778899**********985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (193 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        78  (0.0190151); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.21u 0.13s 00:00:00.34 Elapsed: 00:00:00.34
# Mc/sec: 749.23
//
Query:       MMETSP1137-20121227|6401_1  [L=223]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0068   13.4   0.0     0.0091   13.0   0.0    1.1  1  TIGR01537 portal_HK97: phage portal protein, HK97 family
  ------ inclusion threshold ------
      0.019   11.8   0.0      0.027   11.3   0.0    1.2  1  TIGR02445 fadA: acetyl-CoA C-acyltransferase FadA


Domain annotation for each model (and alignments):
>> TIGR01537  portal_HK97: phage portal protein, HK97 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   0.0   4.4e-06    0.0091      57     132 ..      20      94 ..      14     104 .. 0.89

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 4.4e-06
   TIGR01537  57 afqFwqqlvlsllldGnayivirrdkkgeiveLdlltpnkvtldvdaddreiyyvitvddnnktiektftaedvlh 132
                  +++ q+++++ +++G +y+  + d +g++ + ++ ++++v++ +da+ +e+ + i+ ++   +++ ++++    h
  MMETSP1137-20121227|6401_1  20 QINVRQRVMRNNVVKGTGYLTCSADVRGRLQGVHAERQEEVDVPCDARADETTTAIDRKKRG-SVQTAVLFNHGVH 94 
                 67899************************************************999999855.8888888877766 PP

>> TIGR02445  fadA: acetyl-CoA C-acyltransferase FadA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   1.3e-05     0.027     133     180 ..      27      74 ..      16      97 .. 0.88

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 1.3e-05
   TIGR02445 133 glskhvakaagmmgltaemlgklhgisreqqdafaarsharahaatle 180
                  + ++v k +g +  +a++ g+l g+  e+q++  +   ara ++t  
  MMETSP1137-20121227|6401_1  27 VMRNNVVKGTGYLTCSADVRGRLQGVHAERQEEVDVPCDARADETTTA 74 
                 57889*************************************988865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (223 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        57  (0.0138957); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.21u 0.17s 00:00:00.38 Elapsed: 00:00:00.33
# Mc/sec: 891.93
//
Query:       MMETSP1137-20121227|6402_1  [L=57]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        59  (0.0143832); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.17s 00:00:00.29 Elapsed: 00:00:00.34
# Mc/sec: 221.28
//
Query:       MMETSP1137-20121227|6405_1  [L=159]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.9e-19   66.7   0.0    3.8e-19   66.3   0.0    1.0  1  TIGR03105 gln_synth_III: glutamine synthetase, type III
    1.8e-15   54.4   0.0    5.8e-15   52.8   0.0    1.6  1  TIGR00653 GlnA: glutamine synthetase, type I


Domain annotation for each model (and alignments):
>> TIGR03105  gln_synth_III: glutamine synthetase, type III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.3   0.0   1.8e-22   3.8e-19     303     425 ..       9     131 ..       5     137 .. 0.88

  Alignments for each domain:
  == domain 1    score: 66.3 bits;  conditional E-value: 1.8e-22
   TIGR03105 303 tWaPalisyggnnRthmvRiPdagR.......lelRlaDgaanpYlvsaavlaaGLdGierkldpgkrkdenlyaeelaekgvetLPqtLlealraleadelleealGkelveeflklkreeweeyhrtv 425
                  WaP+++ ++ ++R ++vR+  ++        +elR++ +aa +Ylv+aav+aaGLdG++++l  +++        + a+ g+  LP++L  +l al+ad +l +alG+elv+ f+ +k+ e  +  +++
  MMETSP1137-20121227|6405_1   9 NWAPTVANWAIDDRMAAVRVKSQQSgsakecyFELRMPSSAACAYLVTAAVIAAGLDGLRQELPLPPP-------GQSAADGAAPLPTDLAASLLALKADVVLCDALGEELVRWFVGVKEAEMATIAQRI 131
                 6*******************8543222334449*****************************987776.......46788999***************************************99877766 PP

>> TIGR00653  GlnA: glutamine synthetase, type I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.8   0.0   2.8e-18   5.8e-15     320     452 ..       8     131 ..       3     140 .. 0.87

  Alignments for each domain:
  == domain 1    score: 52.8 bits;  conditional E-value: 2.8e-18
   TIGR00653 320 GyEAPvylaysaknRsaliRiPasanpkak..RiEvRspDpsanpYLafaallmAgldGiknkidpgepldknlyelseeelkelGieqlpesLeealdelesdkevlkevlgeelieafielkrkEveelrlkv 452
                 G  AP +  ++   R a++R+  +++++ak   +E+R+p ++a +YL  aa+++AgldG+++++  +           + + +  G   lp++L+++l +l++d  vl ++lgeel++ f+ +k++E+ ++  ++
  MMETSP1137-20121227|6405_1   8 GNWAPTVANWAIDDRMAAVRVKSQQSGSAKecYFELRMPSSAACAYLVTAAVIAAGLDGLRQELPLPP----------PGQSAADGAAPLPTDLAASLLALKAD-VVLCDALGEELVRWFVGVKEAEMATIAQRI 131
                 778*******************999666652269****************************997654..........4555666999****************.9*********************99887665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (159 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        86  (0.0209654); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.20u 0.16s 00:00:00.36 Elapsed: 00:00:00.47
# Mc/sec: 446.52
//
Query:       MMETSP1137-20121227|6407_1  [L=33]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (33 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        24  (0.0058508); expected 82.0 (0.02)
Passed bias filter:                       24  (0.0058508); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:00.27
# Mc/sec: 161.32
//
Query:       MMETSP1137-20121227|6408_1  [L=248]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (248 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        65  (0.0158459); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.15s 00:00:00.37 Elapsed: 00:00:00.39
# Mc/sec: 839.32
//
Query:       MMETSP1137-20121227|6409_1  [L=182]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (182 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        46  (0.011214); expected 82.0 (0.02)
Passed bias filter:                       42  (0.0102389); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.11s 00:00:00.28 Elapsed: 00:00:00.39
# Mc/sec: 615.95
//
Query:       MMETSP1137-20121227|6410_1  [L=707]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.5e-07   26.5   0.3    5.5e-07   26.5   0.2    2.7  3  TIGR02110 PQQ_syn_pqqF: coenzyme PQQ biosynthesis protein PqqF


Domain annotation for each model (and alignments):
>> TIGR02110  PQQ_syn_pqqF: coenzyme PQQ biosynthesis protein PqqF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   1.1     0.072     3e+02     373     432 ..     123     180 ..      89     216 .. 0.57
   2 !    3.7   1.7     0.001       4.3     100     279 ..     295     475 ..     292     477 .. 0.76
   3 !   26.5   0.2   1.3e-10   5.5e-07     576     696 ..     411     530 ..     400     531 .. 0.82

  Alignments for each domain:
  == domain 1    score: -2.3 bits;  conditional E-value: 0.072
   TIGR02110 373 aalkdllaalqdapserlatqtrlpgapfarsgleapvarlaravesaravaltlaaars 432
                  +++ +++a+  a+s++ a  t  p+ +  ++  +a+v+ +++++  a +++   a++ +
  MMETSP1137-20121227|6410_1 123 TDFALVCDAMAAAASQSAAPSTTAPSTSPSTA--SAAVGTANSTTSVATSTTTSDATSDD 180
                 45555666666666666666666664443333..45555555533322222222222222 PP

  == domain 2    score: 3.7 bits;  conditional E-value: 0.001
   TIGR02110 100 RLcemLarPlltvedqqrEreVleAEyialsadadarreaalldalsaahplrrFraGsrdslalenaalQqALrdFhr.ryYqAeqmqLwLqGPQsLeeLeeLAarfgaslaage.elaqaapaaLlkfaa..ltlaesseerlvllfalealeaaaedavtllkeflqdeaPggLlAeLrer 279
                 + +e La+P l  +     r+Vl   y+   ++++  +   +         +rrF++ +   +a   +   +AL+ F + ++    +mq    G  s +e + L   + a l a   ++ ++++ + ++ +a  + +  + +   + l +  +    a+ av++  +   d +P + + eL+ +
  MMETSP1137-20121227|6410_1 295 KVMEKLAKPGLREDRFLLQRDVLRRRYRNYFKEQPYEHVTYMSSR---MLEMRRFHILEYLEVASSDELSFEALKSFAQeELLRCVHMQVLVHGNFSADEARDLVSDAEAALCAQPlSMSEQPQMRCMQLPAgkEVILRQHPSCSHELHLRHHNADDANSAVEVYLQAGMDVRPTSVIVELIAQ 475
                 678889999999999999999999999998887766554444444...4469*****999999888887789*****87258899*******************99999999887524555666677766541144444444555666666667777888999999999999999999999765 PP

  == domain 3    score: 26.5 bits;  conditional E-value: 1.3e-10
   TIGR02110 576 vqealsvalqlspgtadaerltpvparlgrgveelavdggesAlLlFiPlPtadvaseAAlRlLaqlletaFyqRLRvelQlGYavfsrvrrvadrdGLllavQSPdasaaellqhikaFl 696
                 +++ +++  ql  g+  + r++p +   + ++++   d  +sA+ +++ +     +      l+aq++  a  q LR   QlGY v + vr   ++ GL + +QS +  aa+l + i+aFl
  MMETSP1137-20121227|6410_1 411 SEQPQMRCMQLPAGKEVILRQHP-SCSHELHLRHHNADDANSAVEVYLQAGMDVRPTSVIVELIAQIVHKAAEQQLRTVEQLGYIVWCTVRVDVGVIGLRFIIQSSNHNAAHLDERIEAFL 530
                 55566666666666666666666.44445556666666689999999999988889999999**********************************************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (707 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       143  (0.034861); expected 82.0 (0.02)
Passed bias filter:                       96  (0.0234032); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.17s 00:00:00.67 Elapsed: 00:00:01.14
# Mc/sec: 811.45
//
Query:       MMETSP1137-20121227|6411_1  [L=221]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (221 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        92  (0.0224281); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.14s 00:00:00.34 Elapsed: 00:00:00.59
# Mc/sec: 494.40
//
Query:       MMETSP1137-20121227|6412_1  [L=316]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (316 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        77  (0.0187713); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.16s 00:00:00.41 Elapsed: 00:00:00.42
# Mc/sec: 993.06
//
Query:       MMETSP1137-20121227|6413_1  [L=107]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (107 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        44  (0.0107265); expected 82.0 (0.02)
Passed bias filter:                       39  (0.00950756); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.13s 00:00:00.27 Elapsed: 00:00:00.36
# Mc/sec: 392.30
//
Query:       MMETSP1137-20121227|6414_1  [L=328]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (328 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       172  (0.0419308); expected 82.0 (0.02)
Passed bias filter:                      116  (0.0282789); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.16s 00:00:00.42 Elapsed: 00:00:00.41
# Mc/sec: 1055.91
//
Query:       MMETSP1137-20121227|6415_1  [L=220]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (220 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       104  (0.0253535); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.16s 00:00:00.37 Elapsed: 00:00:00.33
# Mc/sec: 879.93
//
Query:       MMETSP1137-20121227|6416_1  [L=185]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (185 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        58  (0.0141394); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.15s 00:00:00.32 Elapsed: 00:00:00.30
# Mc/sec: 813.93
//
Query:       MMETSP1137-20121227|6417_1  [L=156]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (156 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        54  (0.0131643); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.13s 00:00:00.30 Elapsed: 00:00:00.33
# Mc/sec: 623.95
//
Query:       MMETSP1137-20121227|6418_1  [L=497]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (497 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       110  (0.0268162); expected 82.0 (0.02)
Passed bias filter:                      107  (0.0260848); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.14s 00:00:00.48 Elapsed: 00:00:00.48
# Mc/sec: 1366.64
//
Query:       MMETSP1137-20121227|6419_1  [L=398]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (398 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        44  (0.0107265); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.13s 00:00:00.40 Elapsed: 00:00:00.74
# Mc/sec: 709.89
//
Query:       MMETSP1137-20121227|6420_1  [L=441]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (441 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        83  (0.020234); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.13s 00:00:00.45 Elapsed: 00:00:00.86
# Mc/sec: 676.83
//
Query:       MMETSP1137-20121227|6421_1  [L=80]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (80 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       102  (0.0248659); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.28
# Mc/sec: 377.11
//
Query:       MMETSP1137-20121227|6422_1  [L=352]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (352 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        65  (0.0158459); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.15s 00:00:00.40 Elapsed: 00:00:00.36
# Mc/sec: 1290.56
//
Query:       MMETSP1137-20121227|6423_1  [L=194]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (194 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       271  (0.0660653); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.16s 00:00:00.36 Elapsed: 00:00:00.31
# Mc/sec: 826.00
//
Query:       MMETSP1137-20121227|6427_1  [L=229]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (229 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        44  (0.0107265); expected 82.0 (0.02)
Passed bias filter:                       42  (0.0102389); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.14s 00:00:00.35 Elapsed: 00:00:00.60
# Mc/sec: 503.76
//
Query:       MMETSP1137-20121227|6428_1  [L=330]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.1e-11   40.3   0.0      7e-11   39.9   0.0    1.1  1  TIGR03467 HpnE: squalene-associated FAD-dependent desaturase
      5e-10   36.5   0.0    6.2e-10   36.2   0.0    1.1  1  TIGR02731 phytoene_desat: phytoene desaturase
    3.8e-05   20.4   0.1    5.2e-05   19.9   0.1    1.1  1  TIGR02734 crtI_fam: phytoene desaturase
    0.00018   18.4   0.0    0.00053   16.8   0.0    1.7  1  TIGR02732 zeta_caro_desat: carotene 7,8-desaturase
     0.0004   17.4   0.1    0.00063   16.7   0.1    1.3  1  TIGR03197 MnmC_Cterm: tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain
     0.0006   16.5   0.1    0.00089   16.0   0.0    1.1  1  TIGR01316 gltA: glutamate synthase (NADPH), homotetrameric
     0.0055   13.1   0.0      0.008   12.6   0.0    1.1  1  TIGR01318 gltD_gamma_fam: glutamate synthase, small subunit
     0.0056   13.1   0.0      0.006   13.0   0.0    1.1  1  TIGR00562 proto_IX_ox: protoporphyrinogen oxidase
     0.0071   11.6   0.0     0.0094   11.2   0.0    1.0  1  TIGR03315 Se_ygfK: putative selenate reductase, YgfK subunit
  ------ inclusion threshold ------
      0.041   10.6   0.0      0.064   10.0   0.0    1.2  1  TIGR00518 alaDH: alanine dehydrogenase
      0.057   10.1   0.1      0.075    9.7   0.1    1.1  1  TIGR01317 GOGAT_sm_gam: glutamate synthase, NADH/NADPH, small subunit


Domain annotation for each model (and alignments):
>> TIGR03467  HpnE: squalene-associated FAD-dependent desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.9   0.0   1.9e-13     7e-11       1     186 [.      76     272 ..      76     290 .. 0.85

  Alignments for each domain:
  == domain 1    score: 39.9 bits;  conditional E-value: 1.9e-13
   TIGR03467   1 vvvvGgGlAGLaAAveLaraGvrvtllEarrqlGGRarsfedgslgetiDngqHvllgaytellallarvgaedrlql.erleltfldpegres...rLrl...srlpaPl.hlakgllrakglsladklalarlllal...krerl..raaadetvaewLkakgqserlierlwepllvsaLNedperasaklaakVl 186
                 v++vG+G+ G  AA +L +aG++vtll+  +   G     + +++   +  g       y ++ al++ +g +++  + + ++  f+ p+g e+   ++++   ++lp Pl ++++ +   + + +ad+l++  ll a     r+++  ++ +++t++e+  + g s+rl++++ +p l+  L ++pe+ sa++a++ l
  MMETSP1137-20121227|6428_1  76 VAIVGAGWGGWGAAKALLQAGCQVTLLDTLPDPSGETPYLTPSGKP--FEAGTRGFWKDYPNIEALVRSLGLDEDEVFtPFTNSSFYSPDGLEAtapVFSAssfPELPSPLgQVLATFPLFERIPVADRLTMLGLLYATldfSRSEEtfEKYDRMTAHELFIRMGLSKRLVDDFVRPTLLVGLFKPPEELSAAVAMELL 272
                 89**********************************9999888888..**************************9999899999*****9987644667774445667777445566666778889*****9998876512234333459999******************************************9887 PP

>> TIGR02731  phytoene_desat: phytoene desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.2   0.0   1.7e-12   6.2e-10       2     192 ..      76     272 ..      75     283 .. 0.84

  Alignments for each domain:
  == domain 1    score: 36.2 bits;  conditional E-value: 1.7e-12
   TIGR02731   2 vaiagaglaglsaakyladaghtpivleardvlggkvaawkdedgdwyetglhiffgaypnllqllkelniedrlqwkeh.slifaqpd....kpgelsrfdvpdlpaplnvvlailrnndmltweekikfalgllpaiv...rgqkyveeldkltlsewlkkqgvpervndevfiaaskalnfidpdelsatvvltal 192
                 vai gag  g  aak l +ag +  +l++     g    +    g  +e+g   f+  ypn+  l++ l++++   +       f  pd       ++s   +p+lp+pl  vla +   + +   +++ + lgll a +   r ++  e+ d++t  e + + g+++r+ d+    +     f  p+elsa+v +  l
  MMETSP1137-20121227|6428_1  76 VAIVGAGWGGWGAAKALLQAGCQVTLLDTLPDPSGET-PYLTPSGKPFEAGTRGFWKDYPNIEALVRSLGLDEDEVFTPFtNSSFYSPDgleaTAPVFSASSFPELPSPLGQVLATFPLFERIPVADRLTM-LGLLYATLdfsRSEETFEKYDRMTAHELFIRMGLSKRLVDDFVRPTLLVGLFKPPEELSAAVAMELL 272
                 99**************************998888886.577789**************************9765555433134565555222256689******************************986.9999998733367888999*********************9777777777788999***99987655 PP

>> TIGR02734  crtI_fam: phytoene desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.1   1.4e-07   5.2e-05       2      50 ..      77     125 ..      76     145 .. 0.93

  Alignments for each domain:
  == domain 1    score: 19.9 bits;  conditional E-value: 1.4e-07
   TIGR02734   2 vViGaGlgGLAlAirLaaaGievtvlekrdkpGGRagvleedGfrfDtG 50 
                  ++GaG gG  +A  L +aG++vt+l+   +p G +  l+ +G  f +G
  MMETSP1137-20121227|6428_1  77 AIVGAGWGGWGAAKALLQAGCQVTLLDTLPDPSGETPYLTPSGKPFEAG 125
                 69*************************************9999999988 PP

>> TIGR02732  zeta_caro_desat: carotene 7,8-desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0   1.4e-06   0.00053       2     203 ..      76     277 ..      75     292 .. 0.65

  Alignments for each domain:
  == domain 1    score: 16.8 bits;  conditional E-value: 1.4e-06
   TIGR02732   2 vaivgaglaglatavelvdaghevelyesrsflggkvgswvdkdgnhiemglhvffgcyanlfkllkkvgaldnlllkehthl.fvn.kggeikeldfrfavgapfnglkafftt..eqlklvdklrnalalatspivrglvdydgalktirdldkisfaewflskggseaslkrmwdpiayalgfidcenisarcmltifalfaa 203
                 vaivgag  g  +a  l++ag++v l ++ +   g    +    g   e g   f+  y n+ +l+  +g  ++      t   f    g e  +  f     + f  l + +      + l +++  a  l++  ++ + +d+  + +t  + d+++ +e f+  g s++ ++ +  p      f   e++sa   + ++ ++a 
  MMETSP1137-20121227|6428_1  76 VAIVGAGWGGWGAAKALLQAGCQVTLLDTLPDPSGET-PYLTPSGKPFEAGTRGFWKDYPNIEALVRSLGLDEDEVFTPFTNSsFYSpDGLEATAPVFSA---SSFPELPSPLGQvlATFPLFERIPVADRLTMLGLLYATLDFSRSEETFEKYDRMTAHELFIRMGLSKRLVDDFVRPTLLVGLFKPPEELSAAVAMELLYFYAL 277
                 9*******************************99986.688999***********************999877766655554313220233333333322...2222222222110012233444545555555566666666666666666666666666666666666666666666665555666666666666665555554 PP

>> TIGR03197  MnmC_Cterm: tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.1   1.7e-06   0.00063       1      34 [.      75     108 ..      75     112 .. 0.91

  Alignments for each domain:
  == domain 1    score: 16.7 bits;  conditional E-value: 1.7e-06
   TIGR03197   1 kvavIGaGiAgaalalsLarrGvqvtllekdekl 34 
                 +va++GaG  g  +a++L ++G qvtll+  +++
  MMETSP1137-20121227|6428_1  75 HVAIVGAGWGGWGAAKALLQAGCQVTLLDTLPDP 108
                 79**************************987665 PP

>> TIGR01316  gltA: glutamate synthase (NADPH), homotetrameric
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0   2.4e-06   0.00089     127     177 ..      67     117 ..      49     120 .. 0.85

  Alignments for each domain:
  == domain 1    score: 16.0 bits;  conditional E-value: 2.4e-06
   TIGR01316 127 ekapstkkkvaviGaGpaGlavaselakkGhevtvfealhkpGGvlayGip 177
                   a ++  +va++GaG  G   a+ l ++G +vt+ ++l+ p G   y  p
  MMETSP1137-20121227|6428_1  67 AGASPSPPHVAIVGAGWGGWGAAKALLQAGCQVTLLDTLPDPSGETPYLTP 117
                 456778889***********************************8888666 PP

>> TIGR01318  gltD_gamma_fam: glutamate synthase, small subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.6   0.0   2.1e-05     0.008     141     178 ..      73     110 ..      59     121 .. 0.85

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 2.1e-05
   TIGR01318 141 gkrvaviGaGpaGlacadvlaraGvkvvvfdrypeiGG 178
                   +va++GaG  G + a  l +aG +v++ d  p+  G
  MMETSP1137-20121227|6428_1  73 PPHVAIVGAGWGGWGAAKALLQAGCQVTLLDTLPDPSG 110
                 568****************************9988666 PP

>> TIGR00562  proto_IX_ox: protoporphyrinogen oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   0.0   1.6e-05     0.006       4      90 ..      75     159 ..      73     283 .. 0.93

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 1.6e-05
   TIGR00562   4 kvvvvGgGisGLciayalekerpdvelvlvEakdRvGGkiyTrkesGyllEkGprtlleskegildllkdlGleavlvsidktdkrf 90 
                 +v++vG+G  G  +a al +   + +++l+++ +   G+      sG  +E G r + ++ + i  l++ lGl++++v ++ t+ +f
  MMETSP1137-20121227|6428_1  75 HVAIVGAGWGGWGAAKALLQA--GCQVTLLDTLPDPSGETPYLTPSGKPFEAGTRGFWKDYPNIEALVRSLGLDEDEVFTPFTNSSF 159
                 89****************998..9*****************99***********************************988898888 PP

>> TIGR03315  Se_ygfK: putative selenate reductase, YgfK subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.2   0.0   2.5e-05    0.0094     533     581 ..      69     117 ..      51     121 .. 0.79

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 2.5e-05
   TIGR03315 533 lksekhkvaviGaGPaGlsagyflaraGlpvtvfekkekagGvvkniiP 581
                 ++ + ++va++GaG  G  a+  l +aG +vt+++   ++ G   ++ P
  MMETSP1137-20121227|6428_1  69 ASPSPPHVAIVGAGWGGWGAAKALLQAGCQVTLLDTLPDPSGETPYLTP 117
                 3445679****************************99888887666655 PP

>> TIGR00518  alaDH: alanine dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.0   0.00017     0.064     148     198 ..      52     104 ..      44     108 .. 0.80

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 0.00017
   TIGR00518 148 lektkGGrGvllgGvpGve..agkvtiiGgGvvGtnaaklavGlGatvtildi 198
                 l k++G    +l    G +  + +v+i+G+G  G  aak     G +vt+ld 
  MMETSP1137-20121227|6428_1  52 LGKEQGQARAMLKMQAGASpsPPHVAIVGAGWGGWGAAKALLQAGCQVTLLDT 104
                 667777666666666665511569***************************95 PP

>> TIGR01317  GOGAT_sm_gam: glutamate synthase, NADH/NADPH, small subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.1    0.0002     0.075     145     173 ..      75     103 ..      56     120 .. 0.86

  Alignments for each domain:
  == domain 1    score: 9.7 bits;  conditional E-value: 0.0002
   TIGR01317 145 kvavvGsGPaGlaaadqlnraGhtvtvfe 173
                 +va+vG+G  G  aa+ l +aG +vt+ +
  MMETSP1137-20121227|6428_1  75 HVAIVGAGWGGWGAAKALLQAGCQVTLLD 103
                 79************************976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (330 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       142  (0.0346173); expected 82.0 (0.02)
Passed bias filter:                      138  (0.0336421); expected 82.0 (0.02)
Passed Vit filter:                        55  (0.0134081); expected 4.1 (0.001)
Passed Fwd filter:                        11  (0.00268162); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.40u 0.17s 00:00:00.57 Elapsed: 00:00:00.51
# Mc/sec: 854.05
//
Query:       MMETSP1137-20121227|6429_1  [L=67]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      4e-14   50.1   0.0    4.4e-14   50.0   0.0    1.0  1  TIGR00068 glyox_I: lactoylglutathione lyase


Domain annotation for each model (and alignments):
>> TIGR00068  glyox_I: lactoylglutathione lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.0   0.0   1.1e-17   4.4e-14      17      60 ..       8      51 ..       2      61 .. 0.90

  Alignments for each domain:
  == domain 1    score: 50.0 bits;  conditional E-value: 1.1e-17
   TIGR00068 17 lllhtmlrvgdldksldfytevlGmkllrkkdfpeekfslaflg 60
                + ++tmlr++d+++sl+fy++ + m+l+++ dfp+ kfsl+fl 
  MMETSP1137-20121227|6429_1  8 RWQQTMLRIKDPKASLEFYKKHFNMQLVHRYDFPQWKFSLYFLE 51
                679***************************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (67 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        44  (0.0107265); expected 82.0 (0.02)
Passed bias filter:                       44  (0.0107265); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.12u 0.14s 00:00:00.26 Elapsed: 00:00:00.53
# Mc/sec: 166.85
//
Query:       MMETSP1137-20121227|6430_1  [L=74]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (74 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        26  (0.00633837); expected 82.0 (0.02)
Passed bias filter:                       26  (0.00633837); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.14s 00:00:00.26 Elapsed: 00:00:00.51
# Mc/sec: 191.51
//
Query:       MMETSP1137-20121227|6432_1  [L=253]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.74    5.2  34.6       0.88    5.0  24.0    1.0  1  TIGR02168 SMC_prok_B: chromosome segregation protein SMC
        1.3    4.4  22.9        1.6    4.1  15.9    1.0  1  TIGR02169 SMC_prok_A: chromosome segregation protein SMC


Domain annotation for each model (and alignments):
>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0  24.0   0.00043      0.88     761     922 ..       6     167 ..       1     192 [. 0.56

  Alignments for each domain:
  == domain 1    score: 5.0 bits;  conditional E-value: 0.00043
   TIGR02168 761 leeereeleeeleeaeeel.keaeeeieeleaeieqlkeelkalrealseleaeltelkeeaaekeerleslekeiaalekeleeleeqieeleeeiesleaeieeleeeleeleeeleellke.kasleealaelreeleelseelrelekkvkelereleel 922
                 +++ere++ + ++ + e+l +++ e  ++ +ae+++++eel++ +++ls+++ae+++  e  a+ + ++e le+++++ +++l e +eq+e + ee+++++a+ +    + +++e++l+++l++ +a+++ +l e+ ++ +e++++l    + ++++ere+ + 
  MMETSP1137-20121227|6432_1   6 AAAEREAALQSRAATAEHLaAATAEAADASSAEAAAAREELAQAQARLSAAQAEARDAAEVSAQRAAEVEALESRLREESRKLVEQTEQMELRIEEAAAAAAAEAA-AGAAAKAERQLDAALQSeRAASAMQLVEAVSK-AEAAARLTVQAEVLQAAEREHAAG 167
                 3444444444444444455255555666677888888888888888888888888877777776677777777777777777766666666555555533333333.33346777777766554033333333333333.233333333333344444443333 PP

>> TIGR02169  SMC_prok_A: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1  15.9   0.00077       1.6     338     478 ..      17     155 ..       2     194 .. 0.43

  Alignments for each domain:
  == domain 1    score: 4.1 bits;  conditional E-value: 0.00077
   TIGR02169 338 eieelereieeekkereklkeelkelkeeleelraeleevdkeaaelreelkelkekleklkeelnelkreldrlleelkrleeelaelkaelerieekiaeleeeleelaeei.kkaeqkleqlkedlekaekelr.klkee 478
                 +++  e+  ++ +   ++ ++e ++++eel++ +a+l + ++ea+ + e ++++  ++e+l+++l e     ++l e+ +++e +++e+ a+ ++  ++ a+ ++e++ l++++ ++    ++ql e ++kae+  r   ++e
  MMETSP1137-20121227|6432_1  17 RAATAEHLAAATAEAADASSAEAAAAREELAQAQARLSAAQAEARDAAEVSAQRAAEVEALESRLREES---RKLVEQTEQMELRIEEAAAAAAAEAAAGAAAKAERQ-LDAALqSERAASAMQLVEAVSKAEAAARlTVQAE 155
                 222222222223333344455555556666666666666666666666666666666666655555444...555555555555555554444333333333333222.2222202333344444444444443322022222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (253 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       638  (0.155534); expected 82.0 (0.02)
Passed bias filter:                      143  (0.034861); expected 82.0 (0.02)
Passed Vit filter:                        30  (0.00731351); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.20s 00:00:00.63 Elapsed: 00:00:00.65
# Mc/sec: 513.74
//
Query:       MMETSP1137-20121227|6433_1  [L=231]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   5.3e-107  355.7   1.0   1.3e-104  347.9   0.7    2.0  1  TIGR01472 gmd: GDP-mannose 4,6-dehydratase
    1.8e-17   61.3   0.0    2.4e-17   60.8   0.0    1.1  1  TIGR01181 dTDP_gluc_dehyt: dTDP-glucose 4,6-dehydratase
    2.8e-17   60.5   0.0    3.5e-17   60.2   0.0    1.0  1  TIGR04180 EDH_00030: NAD dependent epimerase/dehydratase, LLPSF_EDH_00030 family
    9.1e-09   32.4   0.0    1.7e-07   28.2   0.0    2.0  1  TIGR01179 galE: UDP-glucose 4-epimerase
  ------ inclusion threshold ------
      0.012   12.7   0.1      0.019   12.0   0.0    1.4  1  TIGR02197 heptose_epim: ADP-glyceromanno-heptose 6-epimerase


Domain annotation for each model (and alignments):
>> TIGR01472  gmd: GDP-mannose 4,6-dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  347.9   0.7  1.6e-107  1.3e-104     102     341 ..       2     223 ..       1     224 [. 0.95

  Alignments for each domain:
  == domain 1    score: 347.9 bits;  conditional E-value: 1.6e-107
   TIGR01472 102 dvdgiGtlrlleavrildlakkirfyqastselyGevkeipqkektpfnprspyaaaklyayyivvnyreayglfavnGilfnhesprrGetfvtrkitravakialgleeklylGnldakrdwGyakdyveamwlmlqqdkpddyviatgettsvrefvevsfelvgitlewkdkgikevglike.vgkvvveidkryfrptevdlllGdatkakeklgwkrevslkelvkemveedlkl 341
                 d+dg+G lrll+a+r ++l+kk++fyqastselyG v+e+pq+e+tpf+prspya+aklyay+ivvnyreayg++a+nGilfnhesprrG tfvtrk+trava+i+ gl+e+ly+Gn+dakrdwG+a+dyve+mw+mlqq+  dd+v+atget+  + +     +++g              ++++   +v v+id++yfrptev+ll G+++kakeklgw ++v++k+l kemv++d+kl
  MMETSP1137-20121227|6433_1   2 DADGMGVLRLLNAIRSAGLEKKTKFYQASTSELYGLVQEVPQSETTPFYPRSPYAVAKLYAYWIVVNYREAYGMHASNGILFNHESPRRGPTFVTRKVTRAVARIHKGLQETLYMGNIDAKRDWGHARDYVEMMWMMLQQPAADDFVVATGETKRGKGV-----DEIG--------------VDASnKERVLVRIDPKYFRPTEVELLIGNPAKAKEKLGWVPKVAMKDLCKEMVDSDIKL 223
                 89******************************************************************************************************************************************************9876654.....4455..............332203489***********************************************986 PP

>> TIGR01181  dTDP_gluc_dehyt: dTDP-glucose 4,6-dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.8   0.0   2.9e-20   2.4e-17     102     308 ..       6     217 ..       2     222 .. 0.85

  Alignments for each domain:
  == domain 1    score: 60.8 bits;  conditional E-value: 2.9e-20
   TIGR01181 102 vGtytlleavrkelk..evrllhistDevyGdlekddaeftettplaPssPysaskaasdllvrayartyglpvlitrcsnnyGpy...qfpekliPllitnalagkklpvy.GdGqqvrDwlyveDhcraielvlekgrvgevyniggeeertnlevvkiilelldkdedlieyved..rpGhDrryaldaskikreLgwkpkvtfeeglrktv 308
                 +G+ +ll+a+r+     + ++ + st e yG +++     +ettp+ P+sPy+ +k  +  +v  y ++yg++++     n   p     f+ + + + + ++ +g + ++y G+    rDw +++D ++ ++++l++    + + ++++e ++ + v +i ++  +k++ l++      rp +      +  k k++Lgw pkv +++  ++ v
  MMETSP1137-20121227|6433_1   6 MGVLRLLNAIRSAGLekKTKFYQASTSELYGLVQEVP--QSETTPFYPRSPYAVAKLYAYWIVVNYREAYGMHASNGILFNHESPRrgpTFVTRKVTRAVARIHKGLQETLYmGNIDAKRDWGHARDYVEMMWMMLQQPAA-DDFVVATGETKRGKGVDEIGVDASNKERVLVRIDPKyfRPTEVELLIGNPAKAKEKLGWVPKVAMKDLCKEMV 217
                 89*********864333899************99984..69*******************************9976555555444311158888899**************98899999***************9998765.56899999999999999999999999888876643333898888888899*************9998887776 PP

>> TIGR04180  EDH_00030: NAD dependent epimerase/dehydratase, LLPSF_EDH_00030 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.2   0.0   4.3e-20   3.5e-17     100     296 ..       7     207 ..       2     208 .. 0.81

  Alignments for each domain:
  == domain 1    score: 60.2 bits;  conditional E-value: 4.3e-20
   TIGR04180 100 Gtlnvlqaardleve...kvvhtstsevyGtaqyvPidekhplqaqsPysaskigadqlalsfyrsfelPvaivrPfntyGPrqsaraviPti...itqilsg.kkkiklGslsPtrdfnyvkdtvegfiavaesdkavGevinigsnfeisigdtvkli..aeilgkeveivtdeerlrPekseverlladnskikeltgwkpky 296
                 G l +l+a r +++e   k+ ++stse+yG  q vP +e+ p  ++sPy+ +k+ a  +++ + +++ +  +    fn   Pr+    v   +   +++i +g ++++ +G++   rd+ + +d ve +  + + ++a   v+  g  +    g+ v++i      +++v +  d + +rP+  eve l+++ +k+ke +gw pk+
  MMETSP1137-20121227|6433_1   7 GVLRLLNAIRSAGLEkktKFYQASTSELYGLVQEVPQSETTPFYPRSPYAVAKLYAYWIVVNYREAYGMHASNGILFNHESPRRGPTFVTRKVtraVARIHKGlQETLYMGNIDAKRDWGHARDYVEMMWMMLQQPAADDFVVATGETKR---GKGVDEIgvDASNKERVLVRIDPKYFRPT--EVELLIGNPAKAKEKLGWVPKV 207
                 7777788887777752226899**************************************************9999**9999987655544441114455555367899***********************999998888887775554...33333331044556789999********6..8999**************9986 PP

>> TIGR01179  galE: UDP-glucose 4-epimerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.2   0.0   2.1e-10   1.7e-07     100     322 ..       7     217 ..       2     226 .. 0.74

  Alignments for each domain:
  == domain 1    score: 28.2 bits;  conditional E-value: 2.1e-10
   TIGR01179 100 ntleLleamqkagvk...kliFsssaavYgesekvpisEesplnpinpYGrsklmvErilkdlkkadkelkvviLRYFnvaGAdeegeiGeasknathliklvaevavgkrekleifGtdyptkDGtcvRDyiHveDlaeaHlaalealeeggesevynlG.agqgfsvkevieavkkvsgkdikveladr..RaGDpaslvadaskikrelgwkpkyddLeeiiksaw 322
                 + l+Ll+a+++ag++   k+  +s++ +Yg  ++vp sE++p  p +pY  +kl + +i+ ++++a ++++      Fn     e+ + G +   + ++ + va++  g +e+l +  ++ ++k     RD+ H  D  e  +  l++ ++  +  v   G + +g  v e+   v++   +++ v+++++  R+ ++  l+++++k+k++lgw pk   +++++k+  
  MMETSP1137-20121227|6433_1   7 GVLRLLNAIRSAGLEkktKFYQASTSELYGLVQEVPQSETTPFYPRSPYAVAKLYAYWIVVNYREA-YGMHASNGILFNH----ESPRRGPTFV-TRKVTRAVARIHKGLQETLYM--GNIDAK-----RDWGHARDYVEMMWMMLQQPAA--DDFVVATGeTKRGKGVDEIG--VDASNKERVLVRIDPKyfRPTEVELLIGNPAKAKEKLGWVPKVA-MKDLCKEMV 217
                 67889999998886422268889*******************************************.9999988888995....4555554432.336778888999999888754..444433.....5555555555555555555442..33333344145688888884..4444556777777777669***********************98.888887755 PP

>> TIGR02197  heptose_epim: ADP-glyceromanno-heptose 6-epimerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   2.3e-05     0.019      98     281 ..      15     203 ..       8     228 .. 0.70

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 2.3e-05
   TIGR02197  98 llelcaekevkliYASSAavYGdseeefreekelerPlNvYgySKllfDelvrkevlkekksaqvvGlryFNVyGprEehKgkmaSvvfklfnqikkekkvkLFksseqlkdGeqlRDFvyvkDvvkvnllllekkeksGifnvGtgkarsfndlaaavvkalgkde.............kiey.idmPealrgkyqk 281
                 + ++ +ek+ k+  AS    YG  +e  + e+    P   Y+ +Kl    +v+ +  + +  +   G+  FN   pr      ++  v +++ +i+k+ +  L+  + + k     RD+ + +D v+++ ++l+++ ++  f v tg+++  + + ++ v+a +k++             ++e  i +P + ++k   
  MMETSP1137-20121227|6433_1  15 IRSAGLEKKTKFYQASTSELYGLVQEVPQSETTPFYPRSPYAVAKLYAYWIVV-NYREAYGMHASNGI-LFNHESPRRGPTF-VTRKVTRAVARIHKGLQETLYMGNIDAK-----RDWGHARDYVEMMWMMLQQP-AADDFVVATGETKRGKGVDEIGVDASNKERvlvridpkyfrptEVELlIGNPAKAKEKLGW 203
                 556678999*************99888888888889*********98888887.44455556567777.5777666655443.3445678888999999999999886665.....88888888888888888886.7777888888888888888888877776655555555555555454324555555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (231 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.28u 0.16s 00:00:00.44 Elapsed: 00:00:00.36
# Mc/sec: 846.93
//
Query:       MMETSP1137-20121227|6434_1  [L=151]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (151 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        56  (0.0136519); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.14s 00:00:00.29 Elapsed: 00:00:00.31
# Mc/sec: 642.91
//
Query:       MMETSP1137-20121227|6435_1  [L=184]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (184 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        60  (0.014627); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.14s 00:00:00.31 Elapsed: 00:00:00.43
# Mc/sec: 564.79
//
Query:       MMETSP1137-20121227|6436_1  [L=412]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      5e-22   75.4   0.0    6.2e-22   75.1   0.0    1.0  1  TIGR03903 TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
    1.8e-07   28.7   0.0    2.7e-07   28.1   0.0    1.1  1  TIGR03724 arch_bud32: Kae1-associated kinase Bud32


Domain annotation for each model (and alignments):
>> TIGR03903  TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.1   0.0     3e-25   6.2e-22      19     190 ..      49     209 ..      32     220 .. 0.83

  Alignments for each domain:
  == domain 1    score: 75.1 bits;  conditional E-value: 3e-25
   TIGR03903  19 erlvaRFrReialCarLshPnivaLlDsGeaedgllFavFeyveGrtlrevL....aadGaLpaaetgrLmlqvLDalaaahdaGvvhRDLkPqnimvsaadveshakvLDFGigaLlpgvedadeatltrttevlGsPaYaaPeqLRgepvtaksDlYaWGLivleCLtGkrvvq 190
                   + aR  Re+ +   L+hP+iv+ l s + ed +l  + ey +G tlr  +    +a Ga ++++  + ++q    l a h++ v+hRD+k +n+ ++a+      k+ DFG+++   ++e+    +l +t    G+P Y++Peq+ +  +   +D+++ G++++e Lt  r  +
  MMETSP1137-20121227|6436_1  49 DLQLARVEREVRILSMLKHPHIVRYLASFQRED-VLCIITEYAAGGTLRTAIrqqrQASGAFSSEQVIAWLVQLASXLYAVHANNVLHRDIKADNVFLTAE---ADIKLGDFGLSS---EIEE---SNLAKT--ACGTPYYTSPEQILNSQP---ADVWSLGVLLFELLTLSRPFE 209
                 35789************************9999.999********99976542222889***************************************986...567999***974...4444...555544..68***********99876...8*************9776655 PP

>> TIGR03724  arch_bud32: Kae1-associated kinase Bud32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.1   0.0   1.3e-10   2.7e-07      38     140 ..      49     163 ..      45     173 .. 0.87

  Alignments for each domain:
  == domain 1    score: 28.1 bits;  conditional E-value: 1.3e-10
   TIGR03724  38 klrkeRtrkEarllseakkagvntPvvydvdpeekkivmeyiegkklkdlleekel...........ellkevGelvgklHkagivhgDlttsNiivk.ddklyliDfGLgkksk 140
                  l+  R+ +E+r+ls +k+  +   +  +  ++   i+ ey  g +l+++++++++             l +++  +  +H ++++h D+   N+ ++ + ++ l DfGL++  +
  MMETSP1137-20121227|6436_1  49 DLQLARVEREVRILSMLKHPHIVRYLASFQREDVLCIITEYAAGGTLRTAIRQQRQasgafsseqviAWLVQLASXLYAVHANNVLHRDIKADNVFLTaEADIKLGDFGLSSEIE 163
                 57889*************999877666666777789*****************99899*9999988877889999999*****************99538899*******98644 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (412 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        94  (0.0229157); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.33u 0.18s 00:00:00.51 Elapsed: 00:00:00.40
# Mc/sec: 1359.49
//
Query:       MMETSP1137-20121227|6438_1  [L=208]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (208 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       184  (0.0448562); expected 82.0 (0.02)
Passed bias filter:                      101  (0.0246221); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.16s 00:00:00.35 Elapsed: 00:00:00.31
# Mc/sec: 885.60
//
Query:       MMETSP1137-20121227|6439_1  [L=194]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.018   12.4   0.1      0.029   11.8   0.0    1.3  1  TIGR03252 TIGR03252: uncharacterized HhH-GPD family protein


Domain annotation for each model (and alignments):
>> TIGR03252  TIGR03252: uncharacterized HhH-GPD family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   7.2e-06     0.029     101     179 ..       5      82 ..       2      91 .. 0.82

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 7.2e-06
   TIGR03252 101 avwtegepdGkellrrlkelpGfGkqkakiflallGkqlGvrpkGwreaageygeedsfrsvadivdaesltkvraykk 179
                 +v++  +++ k +++r++++ G Gkq a  f ++      vr kG  +  ++   + s    a    ++s ++vr+  +
  MMETSP1137-20121227|6439_1   5 RVFA-QSSTEKLVFQRVQDMDGSGKQEAVNFNTVAAASAAVREKGAVRMMTSANSPISAENSAGAGSPSSNSNVRQDCQ 82 
                 5666.56778999********************************9888888888888888888888888888887655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (194 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        71  (0.0173086); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.18u 0.19s 00:00:00.37 Elapsed: 00:00:00.40
# Mc/sec: 640.15
//
Query:       MMETSP1137-20121227|6441_1  [L=307]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (307 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       148  (0.03608); expected 82.0 (0.02)
Passed bias filter:                      107  (0.0260848); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.16s 00:00:00.42 Elapsed: 00:00:00.42
# Mc/sec: 964.78
//
Query:       MMETSP1137-20121227|6442_1  [L=228]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (228 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       116  (0.0282789); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.16s 00:00:00.39 Elapsed: 00:00:00.35
# Mc/sec: 859.81
//
Query:       MMETSP1137-20121227|6444_1  [L=779]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     2e-289  959.4   0.0   2.4e-289  959.1   0.0    1.0  1  TIGR01815 TrpE-clade3: anthranilate synthase
    8.7e-74  247.0   0.0      2e-73  245.8   0.0    1.5  1  TIGR00564 trpE_most: anthranilate synthase component I
    1.6e-65  220.0   0.0    1.9e-65  219.7   0.0    1.1  1  TIGR01820 TrpE-arch: anthranilate synthase component I
    1.7e-58  196.6   0.0    2.5e-58  196.0   0.0    1.2  1  TIGR00565 trpE_proteo: anthranilate synthase component I
    7.1e-54  181.2   0.0    1.1e-53  180.7   0.0    1.2  1  TIGR01824 PabB-clade2: aminodeoxychorismate synthase, component I
      4e-48  162.1   0.0    5.1e-48  161.7   0.0    1.2  1  TIGR00553 pabB: aminodeoxychorismate synthase, component I
    2.4e-47  159.5   0.0    1.4e-24   84.2   0.0    2.1  2  TIGR01823 PabB-fungal: aminodeoxychorismate synthase
      2e-35  120.1   0.0    3.2e-35  119.5   0.0    1.3  1  TIGR00566 trpG_papA: glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase
    9.6e-31  105.1   0.0    1.4e-30  104.6   0.0    1.2  1  TIGR00543 isochor_syn: isochorismate synthase
    2.4e-26   90.3   0.0    3.1e-26   90.0   0.0    1.1  1  TIGR03494 salicyl_syn: salicylate synthase
    4.3e-21   73.0   0.0    8.5e-21   72.0   0.0    1.5  1  TIGR00888 guaA_Nterm: GMP synthase (glutamine-hydrolyzing), N-terminal domain
    1.1e-15   55.3   0.0    1.9e-15   54.5   0.0    1.3  1  TIGR01368 CPSaseIIsmall: carbamoyl-phosphate synthase, small subunit
  ------ inclusion threshold ------
      0.039   11.6   0.1          2    6.0   0.0    2.4  2  TIGR01855 IMP_synth_hisH: imidazole glycerol phosphate synthase, glutamine amidotransferase subunit


Domain annotation for each model (and alignments):
>> TIGR01815  TrpE-clade3: anthranilate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  959.1   0.0  7.6e-292  2.4e-289       1     708 [.      61     777 ..      61     778 .. 0.95

  Alignments for each domain:
  == domain 1    score: 959.1 bits;  conditional E-value: 7.6e-292
   TIGR01815   1 yrtkGgvvvtrratevk.letaleevvdalderrGallsssyeypGrykrwalgfvdppvalsasGrtlriealnerGevllpviaealkkvedlakle.eaarrvtasvkspdevlaeeerskqpsvftvlravldlfaseedellGlyGafgydlafqfeaieqklerpddqrdlvlylpdelvvvdyyaakaflveydfitaagstegleadgedepyrsdt..siepqadhkpGeyaklvekakeafrrGdlfevvpgqkffeaceaapsevferlkainpspyeffvnlGrgeylvgaspemfvrve....GrrvetcpisGtikrGddaiddaaqilkllnskkdeaeltmctdvdrndksrvcepGsvkviGrrqielysrlihtvdhveGrlrdeldaldaflshawavtvtGapkraalqfiekteksprrwyGGavGrlg..fnGdlntGltlrtirlkdgiaevraGatllydsdpeaeeaetelkaaalieairdakaadaakeesavakvgeGkrillvdhedsfvhtlanylrqtGasvttlrhsvaeelldeerpdlvvlspGpGrpkdfdvketikaalardlpvfGvclGlqglveafGGeldvlaepvhGkasrirvl.epdvlfaglpeeltvGryhslfarsdrlpkelkvtaesedgvimaiehrklpvaavqfhpesiltlaGeaGlalienvvdkl 708
                 y+t+Ggv+v   + e++  ++  +e+v++ld +rG l+ ssye+pGry rw +gf dpp+ l ++ r + i aln rGevl+p++   lk+  +l +l+ e+a  + +sv+  ++ ++eeers+q s+f+v+ra+++lf ++++++lGlyG+fgydl+fqfe+++   +r   qrdlvlylpde++v+d  +  a+ ++y+f  +   t gl++ g++e y +++  + +++ dh  Ge+ak v  ake f+ G+lfevv +q+f e+c ++psevf+rl+  npspy+f++nlG+ eylvgaspemfvrve    G r etcpisGti+rG da++da++i+ +l+ kk+e+eltmctdvdrndksr+c  Gsv viGrrqie+ysrlihtvdhveG lrd++da+dafl h+wavtvtGapk +a+qf+e++e spr+wyG a    +       ntGltlrt+ +kdg+a++raGatll+dsdp +ee etelka+a+++a+ +     aa++e+a+++ +   +illvdh+dsfvhtlanylrqtGa vttlr ++ e+ l++ +p l vlspGpG pkdf++ +ti+  l++ +p+fGvclGlqg+ve fGG+l+vl++p+hGk+ +i +  ep+ +fag+p+e+ vGryhsl++ +++ p  l+vtae++dgvim++eh  lp+ avqfhpesilt   + G++++ n   kl
  MMETSP1137-20121227|6444_1  61 YTTRGGVRVHCDVSELEdAQKPYDELVERLDTHRGCLFESSYEFPGRYARWTMGFCDPPLVLESTRRDFVISALNSRGEVLIPAVHSVLKDHTALLTLQlESAACIRGSVRPVETSFTEEERSRQFSIFSVVRALTELFGCDDEPQLGLYGSFGYDLTFQFEPVRPFQQRDLSQRDLVLYLPDEFLVIDIHSRTARSLKYEFTYKGKGTLGLPRVGASEAYSPKAesELPARRDHSAGEFAKKVLRAKEEFKVGNLFEVVLSQTFTEPCPQSPSEVFKRLRRRNPSPYGFIINLGKTEYLVGASPEMFVRVEhdrkGWRCETCPISGTIRRGRDALEDAENIKTILSDKKEESELTMCTDVDRNDKSRICRAGSVSVIGRRQIEMYSRLIHTVDHVEGYLRDGFDAMDAFLVHTWAVTVTGAPKPWAVQFVEEHEASPRNWYGEAAPWATsaSMAAXNTGLTLRTVHIKDGVAQIRAGATLLFDSDPTSEELETELKASAMRDAVLRPDPP-AATTEAAATEAACEANILLVDHQDSFVHTLANYLRQTGAQVTTLRFGFPESELERLKPTLCVLSPGPGCPKDFKLSDTIEMMLKHRIPLFGVCLGLQGIVEHFGGQLGVLPYPQHGKPGNIVLAdEPGTVFAGVPKEFQVGRYHSLYSLKEKHPSCLRVTAETADGVIMGVEHTSLPIGAVQFHPESILTR-TDLGIQMLVNAATKL 777
                 89**********99986267889*******************************************************************9998876662677899*******************************************************************************************************************87651167899*******************************************************************************75555889*****************************************************************************************************************************9876541155688************************************************976655.5555566666667789*******************************************************************************************************998753789*************************************************************95.69******9987775 PP

>> TIGR00564  trpE_most: anthranilate synthase component I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  245.8   0.0   6.3e-76     2e-73      92     453 ..     207     564 ..     174     566 .. 0.91

  Alignments for each domain:
  == domain 1    score: 245.8 bits;  conditional E-value: 6.3e-76
   TIGR00564  92 ggavGylgydtvrlveklkeeaedelelpdlllllvetvivfDhvekkvilienarteaersaeeeaaarleellaelqkelekavkaleekkesftsnvekeeyeekvakakeyikaGdifqvvlSqrleakveakpfelYrkLRtvNPSpylyyldledfe.lvgsSPEllvkvk....gkrvetrPiAGtrkRGatkeeDealeeeLladeKerAEHlmLvDLaRNDigkvaklgsvevkellkiekyshvmHivSeVeGelkdeltavDalraalPaGTlsGAPKvrAmelidelEkekRgiYgGavgylsfdg..dvdtaiaiRtmvlkdgvayvqAgaGiVaDSdpeaEyeEtlnKakallra 453
                  g+ G +gyd+   +e++++ ++ +l+  dl+l+l ++++v D  ++++  ++++ t++++ +      r+ +     +++ ++++    e++ +   + +  e+++kv +ake+ k G++f vvlSq ++ ++ ++p e++++LR+ NPSpy ++++l  +e lvg+SPE++v+v+    g r et Pi Gt +RG++  eD+ + + +l+d+Ke  E +m  D+ RND ++++++gsv+v    +ie ys ++H v +VeG l+d+++a+Da+     a T++GAPK  A++ ++e E + R+ Yg a  + + +   + +t +++Rt+ +kdgva + Aga + +DSdp++E  Et  Ka a+  a
  MMETSP1137-20121227|6444_1 207 LGLYGSFGYDLTFQFEPVRPFQQRDLSQRDLVLYLPDEFLVIDIHSRTARSLKYEFTYKGKGTL--GLPRVGA-----SEAYSPKA----ESELPARRDHSAGEFAKKVLRAKEEFKVGNLFEVVLSQTFTEPCPQSPSEVFKRLRRRNPSPYGFIINLGKTEyLVGASPEMFVRVEhdrkGWRCETCPISGTIRRGRDALEDAENIKTILSDKKEESELTMCTDVDRNDKSRICRAGSVSVIGRRQIEMYSRLIHTVDHVEGYLRDGFDAMDAFLVHTWAVTVTGAPKPWAVQFVEEHEASPRNWYGEAAPWATSASmaAXNTGLTLRTVHIKDGVAQIRAGATLLFDSDPTSEELETELKASAMRDA 564
                 5889*************************************************99999888422..3333333.....33333333....3445555666889********************************************************997549***********986544459****************************************************************************************************************************99988776544889*****************************************99776 PP

>> TIGR01820  TrpE-arch: anthranilate synthase component I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  219.7   0.0   6.1e-68   1.9e-65     175     448 ..     285     565 ..     173     566 .. 0.88

  Alignments for each domain:
  == domain 1    score: 219.7 bits;  conditional E-value: 6.1e-68
   TIGR01820 175 ekkeaeleslaekeefeeavekakekifeGdifqvvlSrklelrldldplelYaklreiNPSPYmyllefgd.raivGaSPEtlvrve....krtveinPiAGtapRgkseeeDeelakelLsdeKerAEHvmLvDLaRNDvrkvsesgsvkvsefmkvlkyshvqHieSevvgtLkkeadafdalkAvfPAGtlsGaPKirAmeiieelEkepRgvYgGgvGyfslngda..dlAiviRtaliekkklriqaGAGivaDSdPekEfeEterKmkavlkai 448
                 ++ e   +++++  ef + v +ake+ + G++f vvlS++ +  + ++p e++++lr+ NPSPY ++++ g+  ++vGaSPE++vrve    + + e+ Pi Gt++Rg++  eD e  k +Lsd+Ke  E +m  D+ RND  +++++gsv+v +  +++ ys+  H + +v g L++  da+da+     A t++GaPK  A++ +ee E++pR+ Yg +  + +   +a  +  +++Rt+ i++  ++i+aGA +  DSdP++E  Ete K++a+ +a+
  MMETSP1137-20121227|6444_1 285 AESELPARRDHSAGEFAKKVLRAKEEFKVGNLFEVVLSQTFTEPCPQSPSEVFKRLRRRNPSPYGFIINLGKtEYLVGASPEMFVRVEhdrkGWRCETCPISGTIRRGRDALEDAENIKTILSDKKEESELTMCTDVDRNDKSRICRAGSVSVIGRRQIEMYSRLIHTVDHVEGYLRDGFDAMDAFLVHTWAVTVTGAPKPWAVQFVEEHEASPRNWYGEAAPWATSASMAaxNTGLTLRTVHIKDGVAQIRAGATLLFDSDPTSEELETELKASAMRDAV 565
                 334444555566889*******************************************************97257************954434479*******************************************************************************************************************************98777665236789****************************************9997 PP

>> TIGR00565  trpE_proteo: anthranilate synthase component I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  196.0   0.0   8.1e-61   2.5e-58      50     493 ..     127     565 ..      96     569 .. 0.88

  Alignments for each domain:
  == domain 1    score: 196.0 bits;  conditional E-value: 8.1e-61
   TIGR00565  50 divtikalsnnGeallkkldaalkal..veavqsenalvlr..flkvkklldedakllsasvfdalrllkslkqkpkepealllgGlfsydlvanfedlpqlkakndnvpdfifylaenlividhkeksveikaalfaereekqvaiakldlkeaqkskkadfvpkvsaasreveanlsdeefegvvkalkkeikkGeifqvvpsrrfslecpetla.ayyqlkksnPsPymfylk.dedfilfGasPesalk..ydaesrqleiyPiaGtrprGkdadGnidrdldsrlelelrldhkeraehlmlvdlarndlarvcksgkryvaellkvdrysnvmhlvsrvvGelrkeldalhayracmnmGtlsGaPkikalqliyqlenqrrgsyGGavGyltse..GdldtcivirsalvkngiavvqaGaGvvldsvPqseadetrakaravlkai 493
                     i al++ Ge l+  +++ lk    + + q e a  +r    +v+    e+ +  + s+f  +r l +l     ep  l l G f ydl  +fe++  ++ ++ +  d ++yl ++++vid + ++++     f  + +  +   +   +ea   k+   +p  +        + s  ef + v+  k+e k+G++f vv+s+ f  +cp++ +  + +l++ nPsPy f ++  +   l GasPe  ++  +d +  + e  Pi+Gt  rG+da  +      +     +  d ke++e  m  d+ rnd +r+c++g+  v    +++ ys ++h v  v G lr++ da+ a+     + t++GaPk  a+q++ + e   r+ yG a  + ts      +t +++r++ +k+g+a+++aGa  ++ds+P se  et  ka a+ +a+
  MMETSP1137-20121227|6444_1 127 RDFVISALNSRGEVLIPAVHSVLKDHtaLLTLQLESAACIRgsVRPVETSFTEEERSRQFSIFSVVRALTELFGCDDEP-QLGLYGSFGYDLTFQFEPVRPFQQRDLSQRDLVLYLPDEFLVIDIHSRTARSLKYEFTYKGKGTLGLPRVGASEAYSPKAESELPARR--------DHSAGEFAKKVLRAKEEFKVGNLFEVVLSQTFTEPCPQSPSeVFKRLRRRNPSPYGFIINlGKTEYLVGASPEMFVRveHDRKGWRCETCPISGTIRRGRDALED------AENIKTILSDKKEESELTMCTDVDRNDKSRICRAGSVSVIGRRQIEMYSRLIHTVDHVEGYLRDGFDAMDAFLVHTWAVTVTGAPKPWAVQFVEEHEASPRNWYGEAAPWATSAsmAAXNTGLTLRTVHIKDGVAQIRAGATLLFDSDPTSEELETELKASAMRDAV 565
                 566799*****************86644566677776666533789*****************************9999.788889*******************************************999999999988888877777777777766666666544........56779********************************876626889*************944556799*****98771145566689*************98653......333335668*****************************************************************************************************9986225679******************************************99997 PP

>> TIGR01824  PabB-clade2: aminodeoxychorismate synthase, component I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  180.7   0.0   3.4e-56   1.1e-53       3     354 ..     209     560 ..     208     561 .. 0.88

  Alignments for each domain:
  == domain 1    score: 180.7 bits;  conditional E-value: 3.4e-56
   TIGR01824   3 llgllaydvareleaildlkteekglpvlallryeaavaldeeeqivavaeaeaekegafataadalaavaaatslaspdvgplaadlealidraayetavkrikdyikaGdvfQaNlsrrltariaaevdplalfealraanpapyailleepgvd.vvsaSPElllkre....grevqtrPIaGTrargadlaeDealaaeLlaadKdrAEhvmivDLeRNDLgrvcetGtvevpellavesyaevlHlvSrVtgrLregleladlleAvFPggsiTGaPKvraleiIeelEptrRgpytGsvgvidad..GdadlnilIRTleaaearlelrvGaGivadSdpegEydEteaKara 354
                 l g + yd++ + e++   ++++    +l l+ ++ ++++d +++ ++  + e + +g  + +  ++ a +a+ ++a+ + +  + d +      ++ ++v r+k+  k G++f + ls+ +t +      p ++f++lr +np+py  +++  +++ +v aSPE+++++e    g   +t PI GT +rg+d  eD+ +++++l+++K+  E  m  D+ RND +r+c++G+v+v   +++e y+ ++H v +V+g Lr+g++++d++     + ++TGaPK  a++ +ee E+ +R+ y  +  ++      + +  +++RT++  ++  ++r+Ga +  dSdp++E  Ete Ka a
  MMETSP1137-20121227|6444_1 209 LYGSFGYDLTFQFEPVRPFQQRDLSQRDLVLYLPDEFLVIDIHSRTARSLKYEFTYKGKGTLGLPRVGASEAYSPKAESELPARR-DHS----AGEFAKKVLRAKEEFKVGNLFEVVLSQTFTEP--CPQSPSEVFKRLRRRNPSPYGFIINLGKTEyLVGASPEMFVRVEhdrkGWRCETCPISGTIRRGRDALEDAENIKTILSDKKEESELTMCTDVDRNDKSRICRAGSVSVIGRRQIEMYSRLIHTVDHVEGYLRDGFDAMDAFLVHTWAVTVTGAPKPWAVQFVEEHEASPRNWYGEAAPWATSAsmAAXNTGLTLRTVHIKDGVAQIRAGATLLFDSDPTSEELETELKASA 560
                 5788999*******99999999999999999999999999999777777777777776666666666666666666555333333.333....46899***************************..55668*****************9999877659*********8652222669*************************************************************************************************************************9999999998873355566789***********************************987 PP

>> TIGR00553  pabB: aminodeoxychorismate synthase, component I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  161.7   0.0   1.6e-50   5.1e-48      31     327 ..     257     559 ..     209     561 .. 0.85

  Alignments for each domain:
  == domain 1    score: 161.7 bits;  conditional E-value: 1.6e-50
   TIGR00553  31 kllrllvferveaeeaeaveaeseaaaeeqallseieveitraeyaeaikkvqeelkaGdvYqanltqqleatldgdplalyrklrkeqpapfsaflelgek.avlslSpElFlsvdgs....eletkPiKGTlprgadpeeDraqasaLaeseKdraEnlmivDLlRnDlgRiaevgsvkvdelfevetyptvhqlvstvkarlreeltlsdllralFPggSiTGaPKlrameiikelEkqrRgvYcGaiGllsp..egeldlnvaIRTlelsggeavlgvGggivadSdaeaEfeEvllKak 327
                 +l + ++++ + +     v a+++ + ++++ l+ ++ + ++ e+a+++ + +ee k G+ +++ l+q ++  + ++p +++++lr+++p+p++  ++lg++  ++  SpE+F++v+++    + et Pi GT+ rg d+ eD++ ++++ +++K+ +E  m +D  RnD +Ri+++gsv+v    ++e y+ + + v +v++ lr+  ++ d++     +  +TGaPK +a + ++e E+++R+ Y  a  +++   +++ ++ +++RT+++++g a++ +G+ + +dSd+ +E  E+ lKa 
  MMETSP1137-20121227|6444_1 257 SLKYEFTYKGKGTLGLPRVGASEAYSPKAESELP-ARRDHSAGEFAKKVLRAKEEFKVGNLFEVVLSQTFTEPCPQSPSEVFKRLRRRNPSPYGFIINLGKTeYLVGASPEMFVRVEHDrkgwRCETCPISGTIRRGRDALEDAENIKTILSDKKEESELTMCTDVDRNDKSRICRAGSVSVIGRRQIEMYSRLIHTVDHVEGYLRDGFDAMDAFLVHTWAVTVTGAPKPWAVQFVEEHEASPRNWYGEAAPWATSasMAAXNTGLTLRTVHIKDGVAQIRAGATLLFDSDPTSEELETELKAS 559
                 3444455555555556666666666666666666.67788999*******************************************************998626889*******99755335679*****************************************************************************************************************************9998651155688889***********************************997 PP

>> TIGR01823  PabB-fungal: aminodeoxychorismate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.2   0.0   9.3e-24   2.9e-21     472     693 ..     299     517 ..     289     563 .. 0.80
   2 !   84.2   0.0   4.5e-27   1.4e-24       5     192 ..     585     764 ..     581     777 .. 0.83

  Alignments for each domain:
  == domain 1    score: 73.2 bits;  conditional E-value: 9.3e-24
   TIGR01823 472 dyakavkaCqeeleaGdsyelCLtdetlvvlpaevsqdwelykrlrklnPaafsgfvrlkhvk.llsssPekflevdrds...rlklkPikGtvkkeedm..slekarkiLksekelgenlmilDLirnDLyelvkkgdvrveellsveeharvyqlvsvvkakvessaskktrysgldvLkkslPPGsmtGaPkkrsvrlLedvedrkrGiysGvlGyldvtgsgef 693
                 ++ak+v + +ee++ G+ +e+ L  +t+ + p + s + e++krlr++nP+++   ++l++   l+ +sPe f+ v++d    r++  Pi Gt++++ d     e+ + iL  +ke +e+ m  D+ rnD   +++ g+v v    ++e ++r    v +v +             ++d++       ++tGaPk  +v+++e+ e   r  y     +   ++ +  
  MMETSP1137-20121227|6444_1 299 EFAKKVLRAKEEFKVGNLFEVVLS-QTF-TEPCPQS-PSEVFKRLRRRNPSPYGFIINLGKTEyLVGASPEMFVRVEHDRkgwRCETCPISGTIRRGRDAleDAENIKTILSDKKEESELTMCTDVDRNDKSRICRAGSVSVIGRRQIEMYSRLIHTVDHVEGYLRDGFD------AMDAFLVHTWAVTVTGAPKPWAVQFVEEHEASPRNWYGEAAPWATSASMAAX 517
                 688999999************997.555.5666667.48********************999757899********988644479***********99842234455779*****************************************************9988877......8887666667789*****************9999999776666555555544 PP

  == domain 2    score: 84.2 bits;  conditional E-value: 4.5e-27
   TIGR01823   5 rlnvLfiDayDsftynvvallekaldvrvsvitvhsDkldddllellqlfdaivvGPGPGdPnvakdvgilsevfelanldevPvlGiCLGfqslcLaqGadierlplplhGqvsevktsda..aifegvss.vkstryhsLyankesidsllalilledeedqilmsvkakkkPifGvqyhPesvkseke 192
                   n+L++D  Dsf + + + l ++    ++v+t+ +  ++ +l  l +     v+ PGPG P   k +  ++ + +      +P++G+CLG+q ++ + G +++ lp+p+hG+  ++ ++d   ++f gv + +++ ryhsLy  ke   s  + +++e   d ++m v+++  Pi  vq+hPes+ +  +
  MMETSP1137-20121227|6444_1 585 EANILLVDHQDSFVHTLANYLRQTG---AQVTTLRFGFPESELERLKPT--LCVLSPGPGCPKDFKLSDTIEMMLKHR----IPLFGVCLGLQGIVEHFGGQLGVLPYPQHGKPGNIVLADEpgTVFAGVPKeFQVGRYHSLYSLKEKHPS-CLRVTAE-TADGVIMGVEHTSLPIGAVQFHPESILTRTD 764
                 679***************9999875...46*********9998665554..589********7777666666666655....************************************9996447999*9656*************99999.3445555.566788*******************977655 PP

>> TIGR00566  trpG_papA: glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  119.5   0.0     1e-37   3.2e-35       2     188 ..     588     772 ..     587     776 .. 0.90

  Alignments for each domain:
  == domain 1    score: 119.5 bits;  conditional E-value: 1e-37
   TIGR00566   2 vllidnydsftynlvqlleelgaevvvkrndsltlqeieallpllsivisPGPctPdeaaisslelie.hlaGklPilGvClGhqalaqafGadvvraekvkhGkvseiehnga..avfaglfnPdalkatryhslvveaetldtllevtaleeeeieimairhrdlpleGvqfhPesils..elGkellan 188
                 +ll+d  dsf + l ++l + ga+v+  r   +  +e+e+l+p l  v+sPGP+ P++  +s  + ie  l  ++P++GvClG q +   fG+++  +   +hGk  +i + ++  +vfag+  P+ ++++ryhsl    e+ +++l vta +     im++ h  lp+  vqfhPesil+  +lG ++l n
  MMETSP1137-20121227|6444_1 588 ILLVDHQDSFVHTLANYLRQTGAQVTTLRF-GFPESELERLKPTL-CVLSPGPGCPKDFKLS--DTIEmMLKHRIPLFGVCLGLQGIVEHFGGQLGVLPYPQHGKPGNIVLADEpgTVFAGV--PKEFQVGRYHSLYSLKEKHPSCLRVTAETADG-VIMGVEHTSLPIGAVQFHPESILTrtDLGIQMLVN 772
                 9***********************998876.67889*********.9***********9999..555415789************************************9999744677776..777***********************999888.9*********************9733679999887 PP

>> TIGR00543  isochor_syn: isochorismate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  104.6   0.0   4.4e-33   1.4e-30      83     348 ..     293     564 ..     240     565 .. 0.87

  Alignments for each domain:
  == domain 1    score: 104.6 bits;  conditional E-value: 4.4e-33
   TIGR00543  83 eeidkeawaeaveealeeirqgkleKvVLarelelklaedievaavleelrqqnkdaylFlleepkggvflGatPErLlsreke....eleteALAGtvkrsadkeedaklgekllkdeKnlrEhqlVvekirreLekice..slevsekpellklakvqHLytkikarlkkeksllkllkqLhPTPAvgGlPreeAlelireiEtfdRglYaapiGwldkeg..ngefiVaiRSalvedeqvrlyAGaGivadSdpesEweEvelKlatllra 348
                  +  + ++a++v  a ee++ g+l  vVL+++  ++   + ++++v+++lr++n+  y F+++ +k++ ++Ga+PE  +++e++    + et ++ Gt+ r+ d+ eda++ +  l d+K++ E  +  +  r++   ic+  s+ v  + ++ + +++ H   ++++ l ++ ++++          v G P+  A+++++e+E   R++Y+    w  +      +   ++R  +++d+ + + AGa ++ dSdp sE  E+elK++++++a
  MMETSP1137-20121227|6444_1 293 RDHSAGEFAKKVLRAKEEFKVGNLFEVVLSQT--FTEPCPQSPSEVFKRLRRRNPSPYGFIINLGKTEYLVGASPEMFVRVEHDrkgwRCETCPISGTIRRGRDALEDAENIKTILSDKKEESELTMCTDVDRNDKSRICRagSVSVIGRRQIEMYSRLIHTVDHVEGYLRDGFDAMDAFLVHTWAVTVTGAPKPWAVQFVEEHEASPRNWYGEAAPWATSASmaAXNTGLTLRTVHIKDGVAQIRAGATLLFDSDPTSEELETELKASAMRDA 564
                 4567789**********************975..66688889*************************************988773333589*************************************99999999999874456677789********************9877666654444445589**********************88888876665226678999********99*****************************986 PP

>> TIGR03494  salicyl_syn: salicylate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.0   0.0   9.8e-29   3.1e-26     158     421 ..     294     563 ..     190     567 .. 0.89

  Alignments for each domain:
  == domain 1    score: 90.0 bits;  conditional E-value: 9.8e-29
   TIGR03494 158 etdaseykervaaavaeiaagkYkkvilsRavelpaavDlpatlllgRrkntPvRsfllrlgekea.lGfsPelvlsvradgk...vvtePLaGtRaleegpeeakklkeeLlsdskeivehvisvkeaieeleevcepgtvvvedlmtvreRGsvqhLgstvsgqLaedkdawdafevLfPaitasGiPkaaaieailrleetpReLYsGavlliead..etldaaLvLRavyqksektwlqaGaGiiaqstPeReleetceklasiap 421
                 +++a e+ ++v +a +e + g+   v+ls + + p      + +   Rr+n     f+++lg++e  +G sPe+ + v++d k     t P++Gt  +++++ e+++  + +lsd ke  e  +      ++ +++c  g+v v    ++       h    v g L ++ da+daf v   a+t +G Pk  a++ +   e +pR+ Y  a   + +    + ++ L+LR+v+ k++ + ++aGa ++ +s+P  e  et  k +++ +
  MMETSP1137-20121227|6444_1 294 DHSAGEFAKKVLRAKEEFKVGNLFEVVLSQTFTEPCPQSPSEVFKRLRRRNPSPYGFIINLGKTEYlVGASPEMFVRVEHDRKgwrCETCPISGTIRRGRDALEDAENIKTILSDKKEESELTMCTDVDRNDKSRICRAGSVSVIGRRQIEMYSRLIHTVDHVEGYLRDGFDAMDAFLVHTWAVTVTGAPKPWAVQFVEEHEASPRNWYGEAAPWATSAsmAAXNTGLTLRTVHIKDGVAQIRAGATLLFDSDPTSEELETELKASAMRD 563
                 455679*******************************99999*********999********998537**********9987644479*************************************************************************************************************************999877654411567899***********************************99998876 PP

>> TIGR00888  guaA_Nterm: GMP synthase (glutamine-hydrolyzing), N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.0   0.0   2.7e-23   8.5e-21       1     181 [.     588     774 ..     588     778 .. 0.90

  Alignments for each domain:
  == domain 1    score: 72.0 bits;  conditional E-value: 2.7e-23
   TIGR00888   1 ilvldfgsqYaqliaRrlrelgvyselvpatttleeikevepkgiilsGgPesvkaenaekvdekifelgvPvlGiCyGmqllakalGgeveraekreygka.elevlded.elfkglekelkvWmsh..gDkvkelPegfkvlaksencpvaalkkeekklyGvqfhPe..vthtekGkellenfv 181
                 il++d +  +++ +a  lr++g +   + +  +++e++  +p+  +ls gP   k+ + +++ e++++  +P++G+C+G+q +++ +Gg+ +     ++gk  ++ + de  ++f+g++ke++v   h  +   ++ P+  +v+a+++   +  +++++ ++  vqfhPe   t+t+ G ++l n +
  MMETSP1137-20121227|6444_1 588 ILLVDHQDSFVHTLANYLRQTGAQVTTLRFGFPESELERLKPTLCVLSPGPGCPKDFKLSDTIEMMLKHRIPLFGVCLGLQGIVEHFGGQLGVLPYPQHGKPgNIVLADEPgTVFAGVPKEFQVGRYHslYSLKEKHPSCLRVTAETADGVIMGVEHTSLPIGAVQFHPEsiLTRTDLGIQMLVNAA 774
                 899************************************************************************************************98625555555459***********7766215666789*********************************44467788999998865 PP

>> TIGR01368  CPSaseIIsmall: carbamoyl-phosphate synthase, small subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.5   0.0   6.1e-18   1.9e-15     174     341 ..     584     758 ..     530     764 .. 0.77

  Alignments for each domain:
  == domain 1    score: 54.5 bits;  conditional E-value: 6.1e-18
   TIGR01368 174 kklrvvvidl..GvKenilreLvkrgvevtvvpadtsaeeikklnpdgillsnGPGdPaaveeaietvkklleakiPifGIclGhqllalalgaktyklkfGhrGaNhpvkdlktgrveitsqNHgyavdees....lkeeele..vthvnlnDgtveglehkelpvfsvQyHPea 341
                  +++++++d    + ++  + L ++g++vt +   ++ +e+++l+p   +ls GPG P++ +   +t++ +l+++iP+fG+clG q +   +g++   l + ++G+   +   ++    ++    ++ v +      lke++ +      +  Dg + g+eh++lp+ +vQ+HPe+
  MMETSP1137-20121227|6444_1 584 CEANILLVDHqdSFVHTLANYLRQTGAQVTTLRFGFPESELERLKPTLCVLSPGPGCPKDFK-LSDTIEMMLKHRIPLFGVCLGLQGIVEHFGGQLGVLPYPQHGKPGNIVLADEPGTVFAGVPKEFQVGRYHslysLKEKHPSclRVTAETADGVIMGVEHTSLPIGAVQFHPES 758
                 335677777633456788999***************************************96.789***************************************866665555555556666777887654323325555433003456789**********************7 PP

>> TIGR01855  IMP_synth_hisH: imidazole glycerol phosphate synthase, glutamine amidotransferase subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   0.0    0.0062         2      61      86 ..     647     672 ..     640     677 .. 0.81
   2 ?    2.9   0.0     0.057        18     164     194 ..     737     772 ..     691     776 .. 0.59

  Alignments for each domain:
  == domain 1    score: 6.0 bits;  conditional E-value: 0.0062
   TIGR01855  61 ellaekvvkkkkpvlgiClGmQllfe 86 
                 + ++e + k++ p+ g+ClG+Q ++e
  MMETSP1137-20121227|6444_1 647 SDTIEMMLKHRIPLFGVCLGLQGIVE 672
                 45568889999***********7776 PP

  == domain 2    score: 2.9 bits;  conditional E-value: 0.057
   TIGR01855 164 kfvaavekdn..ivgvQFHPEk...SgktGlkllkn 194
                   +  ve+    i +vQFHPE      + G ++l n
  MMETSP1137-20121227|6444_1 737 GVIMGVEHTSlpIGAVQFHPESiltRTDLGIQMLVN 772
                 4555555544225689*****622235567777666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (779 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       105  (0.0255973); expected 82.0 (0.02)
Passed bias filter:                       96  (0.0234032); expected 82.0 (0.02)
Passed Vit filter:                        23  (0.00560702); expected 4.1 (0.001)
Passed Fwd filter:                        13  (0.00316919); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.70u 0.18s 00:00:00.87 Elapsed: 00:00:00.78
# Mc/sec: 1318.20
//
Query:       MMETSP1137-20121227|6445_1  [L=226]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.044   10.7   0.0       0.07   10.0   0.0    1.3  1  TIGR00263 trpB: tryptophan synthase, beta subunit


Domain annotation for each model (and alignments):
>> TIGR00263  trpB: tryptophan synthase, beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.0   1.7e-05      0.07     164     197 ..      95     128 ..      91     149 .. 0.81

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 1.7e-05
   TIGR00263 164 avnealrdWvtsvedthyvlGsavGphPfPeivr 197
                 a+ + + +W+++ +d+hyv G++ Gp+   + v 
  MMETSP1137-20121227|6445_1  95 ALRSRFAHWASHGADVHYVFGTTHGPDDLADNVF 128
                 56667789******************98777664 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (226 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        47  (0.0114578); expected 82.0 (0.02)
Passed bias filter:                       41  (0.00999512); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.19u 0.15s 00:00:00.34 Elapsed: 00:00:00.47
# Mc/sec: 634.67
//
Query:       MMETSP1137-20121227|6446_1  [L=755]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (755 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       103  (0.0251097); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.15s 00:00:00.60 Elapsed: 00:00:00.50
# Mc/sec: 1993.04
//
Query:       MMETSP1137-20121227|6447_1  [L=300]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        9.9    2.1   9.3         10    2.1   6.4    1.1  1  TIGR00934 2a38euk: potassium uptake protein, Trk family


Domain annotation for each model (and alignments):
>> TIGR00934  2a38euk: potassium uptake protein, Trk family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   6.4    0.0025        10     321     421 ..      72     170 ..       6     278 .. 0.48

  Alignments for each domain:
  == domain 1    score: 2.1 bits;  conditional E-value: 0.0025
   TIGR00934 321 ltrlaktksfddskavrlersktidraeasdleeldrakdfqkmveknvkaakrkkknfkkreanlklfeksryakksdrneedngnkkdasksneseevs 421
                  t++  ++  +d    +   ++  +  ++  +++ d++kd++k  +k+ ++++r+ +n++k+ a  +l + s ++++   +  ++g ++ +  +++se ++
  MMETSP1137-20121227|6447_1  72 ATKTGSDEGIQDYVVNPKASAHKHGCKHKEKHKHKDKHKDKHKEKHKDKHGSTRNVHNLRKQTAAGDLNSGSDSSSDDVAESASSGSHVAT--RQQSEVAK 170
                 2222222222221111111111122222222222222222223333333333333333333333333333333333333333333322222..22222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (300 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       262  (0.0638713); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.30u 0.17s 00:00:00.47 Elapsed: 00:00:00.61
# Mc/sec: 649.13
//
Query:       MMETSP1137-20121227|6448_1  [L=386]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (386 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       188  (0.0458313); expected 82.0 (0.02)
Passed bias filter:                      106  (0.0258411); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.16s 00:00:00.47 Elapsed: 00:00:00.34
# Mc/sec: 1498.46
//
Query:       MMETSP1137-20121227|6449_1  [L=288]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      6e-10   36.5   1.3    1.1e-09   35.7   0.4    1.6  1  TIGR01622 SF-CC1: splicing factor, CC1-like family
    2.7e-09   34.6   0.0    3.4e-09   34.2   0.0    1.1  1  TIGR01628 PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family
    0.00093   15.6   0.0     0.0014   15.0   0.0    1.3  1  TIGR01642 U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor
    0.00098   15.8   0.0     0.0013   15.3   0.0    1.1  1  TIGR01645 half-pint: poly-U binding splicing factor, half-pint family
     0.0084   13.5   0.0      0.012   13.0   0.0    1.1  1  TIGR01661 ELAV_HUD_SF: ELAV/HuD family splicing factor
  ------ inclusion threshold ------
      0.015   12.7   0.0      0.028   11.9   0.0    1.3  1  TIGR01659 sex-lethal: sex-lethal family splicing factor


Domain annotation for each model (and alignments):
>> TIGR01622  SF-CC1: splicing factor, CC1-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.7   0.4   1.6e-12   1.1e-09     217     293 ..      81     158 ..      67     203 .. 0.84

  Alignments for each domain:
  == domain 1    score: 35.7 bits;  conditional E-value: 1.6e-12
   TIGR01622 217 iadlkLYvGnlhfnitEqeLrqiFepFG.eielvqlqkDpetGrskGyGFiqFsdaeeakeAleklNGlelAGReikv 293
                  a+++++v nl f+    +L++ F+  G +     +  D +tGrskG G +qF+    a++A+e++ G  l GR i  
  MMETSP1137-20121227|6449_1  81 FAETRVFVENLTFETEWTDLKDHFKQAGyPTVYASISTDRDTGRSKGCGIVQFETVHAAQDAIEHMTGSLLDGRSINC 158
                 578899999999999999999999998845677899999999999999999999999999999999999999999875 PP

>> TIGR01628  PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.2   0.0     5e-12   3.4e-09      87     171 ..      82     168 ..      68     176 .. 0.81

  Alignments for each domain:
  == domain 1    score: 34.2 bits;  conditional E-value: 5e-12
   TIGR01628  87 GvgNifvKnLdksidnkaLfdtFskfGn.ilsckvatd.eeGkSkgYgfvhfedeesAkeAieklNgvllndkevyvgkfikksere 171
                  ++ +fv nL  + +   L+d F++ G   +   + td ++G+Skg g v+fe+  +A++Aie++ g ll+ + +   +  ++++r+
  MMETSP1137-20121227|6449_1  82 AETRVFVENLTFETEWTDLKDHFKQAGYpTVYASISTDrDTGRSKGCGIVQFETVHAAQDAIEHMTGSLLDGRSINCRPDAQEQSRR 168
                 5789********************98852344566666268*******************************999988877777665 PP

>> TIGR01642  U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0     2e-06    0.0014     296     372 ..      83     160 ..      79     205 .. 0.90

  Alignments for each domain:
  == domain 1    score: 15.0 bits;  conditional E-value: 2e-06
   TIGR01642 296 edklyignLPldlkddqvkeLLesFGdLkaFn.liKdlatGlsKGyaFceykdssvtdlAiaaLnGiklgdkkLnvkr 372
                 e +++++nL ++ +   +k+  ++ G    +  +  d++tG sKG + ++++    ++ Ai+ + G  l ++ +n + 
  MMETSP1137-20121227|6449_1  83 ETRVFVENLTFETEWTDLKDHFKQAGYPTVYAsISTDRDTGRSKGCGIVQFETVHAAQDAIEHMTGSLLDGRSINCRP 160
                 679***********************8887761668******************************999988888775 PP

>> TIGR01645  half-pint: poly-U binding splicing factor, half-pint family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0     2e-06    0.0013     108     182 ..      85     161 ..      81     176 .. 0.85

  Alignments for each domain:
  == domain 1    score: 15.3 bits;  conditional E-value: 2e-06
   TIGR01645 108 rv.vGsisfelkedtlrrafdPfG.PiksinmsWdpvtqkhkgfafve.evPeaallaleqmngallGGrnlkvgrPs 182
                 rv v  + fe +   l+  f+  G P     +s d  t++ kg   v+ e   aa+ a e+m g ll Gr +   rP+
  MMETSP1137-20121227|6449_1  85 RVfVENLTFETEWTDLKDHFKQAGyPTVYASISTDRDTGRSKGCGIVQfETVHAAQDAIEHMTGSLLDGRSINC-RPD 161
                 66678888888888888888888878888899**************************************9975.444 PP

>> TIGR01661  ELAV_HUD_SF: ELAV/HuD family splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   0.0   1.7e-05     0.012     101     155 ..      95     150 ..      78     159 .. 0.76

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 1.7e-05
   TIGR01661 101 mtqkeleslfspfGk.iitsrilsdnvtdlskGvGfirfdkreeadraikalnGtt 155
                     +l   f++ G   + + i +d+ t+ skG G ++f+  + a+ ai ++ G+ 
  MMETSP1137-20121227|6449_1  95 TEWTDLKDHFKQAGYpTVYASISTDRDTGRSKGCGIVQFETVHAAQDAIEHMTGSL 150
                 45567777787777435667799999999999999999999999999999999986 PP

>> TIGR01659  sex-lethal: sex-lethal family splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   4.1e-05     0.028     192     262 ..      82     153 ..      72     160 .. 0.83

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 4.1e-05
   TIGR01659 192 kdtnlyvtnlprtitddqldtifgkygs.ivqknilrdkltgkprgvafvrfnkreeaqeaisalnnvipeg 262
                  +t ++v nl+      +l+  f + g   v   i  d+ tg+ +g  +v+f+    aq+ai  +   + +g
  MMETSP1137-20121227|6449_1  82 AETRVFVENLTFETEWTDLKDHFKQAGYpTVYASISTDRDTGRSKGCGIVQFETVHAAQDAIEHMTGSLLDG 153
                 5788899999988888889999998886478999999************************98877665555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (288 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        66  (0.0160897); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.28u 0.16s 00:00:00.44 Elapsed: 00:00:00.28
# Mc/sec: 1357.60
//
Query:       MMETSP1137-20121227|6450_1  [L=472]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (472 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       117  (0.0285227); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.17s 00:00:00.50 Elapsed: 00:00:00.38
# Mc/sec: 1639.44
//
Query:       MMETSP1137-20121227|6451_1  [L=131]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (131 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       143  (0.034861); expected 82.0 (0.02)
Passed bias filter:                      122  (0.0297416); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.13s 00:00:00.29 Elapsed: 00:00:00.30
# Mc/sec: 576.35
//
Query:       MMETSP1137-20121227|6452_1  [L=87]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (87 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       120  (0.029254); expected 82.0 (0.02)
Passed bias filter:                      101  (0.0246221); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.12s 00:00:00.27 Elapsed: 00:00:00.27
# Mc/sec: 425.30
//
Query:       MMETSP1137-20121227|6453_1  [L=193]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (193 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        62  (0.0151146); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.12s 00:00:00.31 Elapsed: 00:00:00.30
# Mc/sec: 849.13
//
Query:       MMETSP1137-20121227|6454_1  [L=1636]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.5e-57  190.9   7.3    2.4e-23   79.6   1.3    4.0  4  TIGR04121 DEXH_lig_assoc: DEXH box helicase, DNA ligase-associated
    2.4e-19   66.9   8.7    1.8e-12   44.2   0.0    3.0  2  TIGR03817 DECH_helic: helicase/secretion neighborhood putative DEAH-box helicase
    3.4e-18   63.5   6.8    2.2e-07   27.8   2.1    4.3  3  TIGR00643 recG: ATP-dependent DNA helicase RecG
    8.8e-16   55.8   1.8    2.1e-09   34.8   0.2    3.9  2  TIGR01587 cas3_core: CRISPR-associated helicase Cas3
    5.6e-14   49.6   0.0    9.9e-06   22.4   0.0    3.5  3  TIGR00614 recQ_fam: ATP-dependent DNA helicase, RecQ family
    1.1e-10   38.4   1.0     0.0013   15.1   0.0    4.3  5  TIGR01389 recQ: ATP-dependent DNA helicase RecQ
    3.4e-05   20.8   0.4      0.007   13.2   0.0    3.2  3  TIGR04095 dnd_restrict_1: DNA phosphorothioation system restriction enzyme
    4.1e-05   20.7   0.6      0.081    9.8   0.1    4.3  5  TIGR03158 cas3_cyano: CRISPR-associated helicase Cas3, subtype CYANO
    0.00029   17.3   1.2        0.3    7.4   0.0    3.4  3  TIGR00595 priA: primosomal protein N'
    0.00051   16.3   0.1       0.33    7.0   0.0    3.3  3  TIGR00580 mfd: transcription-repair coupling factor
     0.0031   14.7   0.1        0.5    7.4   0.0    2.3  2  TIGR02782 TrbB_P: P-type conjugative transfer ATPase TrbB
     0.0047   13.3   0.1     0.0047   13.3   0.1    2.2  3  TIGR03117 cas_csf4: CRISPR type AFERR-associated DEAD/DEAH-box helicase Csf4
     0.0095   12.6   0.2        1.2    5.7   0.0    2.8  2  TIGR02928 TIGR02928: orc1/cdc6 family replication initiation protein
  ------ inclusion threshold ------
      0.021   10.4   0.3        1.3    4.5   0.0    2.1  2  TIGR02785 addA_Gpos: helicase-exonuclease AddAB, AddA subunit


Domain annotation for each model (and alignments):
>> TIGR04121  DEXH_lig_assoc: DEXH box helicase, DNA ligase-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.6   1.3   8.2e-26   2.4e-23      27     271 ..       6     252 ..       2     259 .. 0.83
   2 !   13.1   0.0     1e-05     0.003     282     324 ..     285     327 ..     271     340 .. 0.85
   3 !   78.2   0.0   2.1e-25   6.2e-23      11     261 ..     822    1064 ..     812    1079 .. 0.74
   4 !   19.8   0.1   9.6e-08   2.8e-05     276     321 ..    1109    1154 ..    1100    1162 .. 0.88

  Alignments for each domain:
  == domain 1    score: 79.6 bits;  conditional E-value: 8.2e-26
   TIGR04121  27 egesglliapTGaGKTlavflpsliela.....akekpkkglkvlyitPLkaLakdieraleapieelgleirvelrtGDtssserarqrkkppdiLltTpEslaLllsskdaeklfkdlravvvDElHeLlgskRGdlleLaLar....LrrlapelrvvglsATvgnleeaaevllgeekeekaklvkakekkalevesllpeeeeklPwaGhlglkaleevleeikkarttlvFtNtRsqaEllfqaLlea 271
                 ++e+ l+ apTGaGKT  + l+++ ++a        ++ k  k++y++P+kaLa++i    +++++ l+l   v   tGD + ++r+       +iL+tTpE+  + +++k a++l++++  +++DE+H Ll+  RG  +e  +ar    +++ ++  r+vglsAT+ n  ++a +l  + ++   +  +a ++  l+ + +  + ++    +  +   ++e+ l+++++ ++++vF+ +R+ + ++ +aL + 
  MMETSP1137-20121227|6454_1   6 SQENMLVCAPTGAGKTNVALLAIMQQVAtafenGVLQRDKLNKMVYVAPMKALAQEIVGKFSKALAPLALV--VREYTGDMQLTKREIM---ATQILVTTPEKWDV-VTRKGADTLVQSVGLLIIDEVH-LLNDERGPVIEAVVARtlrlVESSQQMTRIVGLSATLPNYLDVALFLRVNPQSGLFHFSSAYRPVPLKQTFIGITAKNVAERNARMIEVTYEKALAALRNGKQVMVFVHARNETQRTARALADE 252
                 56889**********************976653223333666899********************998875..6789****99988765...579*********97.57999*****************.77899******9999842212334556789**********999999988888777788888777777777776776677777888999999**********************99999888776 PP

  == domain 2    score: 13.1 bits;  conditional E-value: 1e-05
   TIGR04121 282 hHgsldkeqRekveaalkagklravvcTssLdLGvDfgdvdlv 324
                 hH+ ++++ R+ ve+ +++g+++++v+T++L  Gv   +   +
  MMETSP1137-20121227|6454_1 285 HHAGMTRADRTLVEDLFSDGHVQVLVSTATLAWGVNLPAHTVI 327
                 ***********************************98765555 PP

  == domain 3    score: 78.2 bits;  conditional E-value: 2.1e-25
   TIGR04121   11 gweprafQkevleaaeegesglliapTGaGKTlavflpslielaakekpkkglkvlyitPLkaLakdieralea.pieelgleirvelrtGDtssserarqrkkppdiLltTpEslaLllsskdaeklfkdlravvvDElHeLlgskRGdlleLaLarLrrlape....lrvvglsATvgnleeaaevllgeek..eekaklvkakekkalevesllpeeeeklPwaGhlglkaleevleeikkarttlvFtNtRsqa 261 
                   +++++ Q    +a++++ + l+ apTG+GKT ++ l++l  +      + g k++yi+PLkaL ++  +  +a  +++lgl++  +  tGD + ++ra  +   ++iL tTpE+   +  + ++++++++++ v++DE+H Llg+ RG  le  ++r+r +a++    +r+vgls  ++n +++a++l   ++   + +  v   ++  lev+      ++  P    +    + ++l++ +  + tlvF+  R q+
  MMETSP1137-20121227|6454_1  822 HFNAVQTQI-FHTAYQTDANVLVGAPTGSGKTVTAELAVLRLVR----AHPGCKAVYIAPLKALVRERMQDWNAkFVKKLGLKM--QELTGDVTPDSRALAN---ATILATTPEKWDGVSRHWQQRAYVRKVSLVIIDEIH-LLGEERGPILEVIVSRMRYMAERqgqpVRIVGLSTAMANANDLADWLGIPQDslFNFKPSV---RPVPLEVHIAGFPGQHYCPRMAAMNKPCYRAILNH-SPDKPTLVFVSSRRQT 1064
                  555444443.346789999******************9987666....7789**************998887751678777765..689*******999765...68**********************************.889***************9886444449******************987776222222222...22222222222222445555555555555555544.3445667777776666 PP

  == domain 4    score: 19.8 bits;  conditional E-value: 9.6e-08
   TIGR04121  276 aleialhHgsldkeqRekveaalkagklravvcTssLdLGvDfgdv 321 
                  a  i++hH+ l+++ R  ve+ + + ++ ++vcT++L  Gv f + 
  MMETSP1137-20121227|6454_1 1109 AFGIGIHHAGLEDSDRILVEKLFLEQSIMVLVCTATLAWGVNFPAH 1154
                  6679***************************************764 PP

>> TIGR03817  DECH_helic: helicase/secretion neighborhood putative DEAH-box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.7   3.9   3.7e-08   1.1e-05      52     346 ..       8     322 ..       3     382 .. 0.72
   2 !   44.2   0.0     6e-15   1.8e-12      41     223 ..     827    1007 ..     819    1121 .. 0.76

  Alignments for each domain:
  == domain 1    score: 21.7 bits;  conditional E-value: 3.7e-08
   TIGR03817  52 ehvvvatgtasGkslayllPvlsalaed.........pratalylaPtkalaadqlrav.keleerdvraatydGdtpaeerewirekaryvltnPdmlhlgilpsharWakflralryvvvdechsyrGvfGshvalvlrrlrrlcaryGaePvfllasatsadpaaaasrliGleveavtedgsPrgartvvlwePallelegengapvr.rsasaeaadlladlvaegvrtltfvrsrrgaevvaleakerlaevdaelae.................rvaa.yraGylaedrreleralkdGellgvaatnalelGvdis 346
                 e++ v++ t +Gk+   ll +++++a++         + ++ +y+aP kala++ + +  k+l    + +  y Gd +  +re +   +++++t P+   +      +   ++++++  +++de+h      G  + +v+ r +rl++   +   ++  sat  +    a  l   + + + + +s   +  v l + +++ ++ +n a+   r +     + la l  +g + ++fv++r +++ +a + +++ ++ + +                    +va  + aG  + dr  +e+ ++dG+++ +++t +l  Gv++ 
  MMETSP1137-20121227|6454_1   8 ENMLVCAPTGAGKTNVALLAIMQQVATAfengvlqrdKLNKMVYVAPMKALAQEIVGKFsKALAPLALVVREYTGDMQLTKREIMA--TQILVTTPEKWDVVTR---KGADTLVQSVGLLIIDEVHLLNDERGPVIEAVVARTLRLVESSQQMTRIVGLSATLPNYLDVALFLRVNPQSGLFHFSSAYRP--VPL-KQTFIGITAKNVAERNaRMIEVTYEKALAAL-RNGKQVMVFVHARNETQRTARALADEATKRGXDGDVraaagapaagarqegrrQVAQpHHAGMTRADRTLVEDLFSDGHVQVLVSTATLAWGVNLP 322
                 67899*******************99998777777666899*************9976526788999****************985..568999**98765433...3345789999*******************************99999999999***9999999988888887777776665443..344.3456667777776533144444445566655.678999999999987777776665555554433222000000000111111113432245666666666667777777777777777777777665 PP

  == domain 2    score: 44.2 bits;  conditional E-value: 6e-15
   TIGR03817   41 qaraaelah.aGehvvvatgtasGkslayllPvlsalaedpratalylaPtkalaadqlra..vkeleerdvraatydGdtpaeerewirekaryvltnPdmlhlgilpsharWakflralryvvvdechsyrGvfGshvalvlrrlrrlcaryGaePvfllasatsadpaaaasrliGleveavt 223 
                  q+++ + a  +  +v v + t sGk+++  l vl  ++++p+ +a+y+aP kal +++++    k +++ +++ + + Gd   ++r+ +  +a+++ t P+    g+ + h +   ++r++  v++de h      G  +  ++ r+r +++r G +Pv ++  +t+   a+  +  +G++   + 
  MMETSP1137-20121227|6454_1  827 QTQIFHTAYqTDANVLVGAPTGSGKTVTAELAVLRLVRAHPGCKAVYIAPLKALVRERMQDwnAKFVKKLGLKMQELTGDVTPDSRALA--NATILATTPEKW-DGVSR-HWQQRAYVRKVSLVIIDEIHLLGEERGPILEVIVSRMRYMAERQG-QPVRIVGLSTAMANANDLADWLGIPQDSLF 1007
                  5555555541456899999************************************9988761156688899***************886..789999999975.56655.55566789**************9999*****************99.699988888888777777777787766554 PP

>> TIGR00643  recG: ATP-dependent DNA helicase RecG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.8   2.1   7.5e-10   2.2e-07     260     554 ..      11     360 ..       4     365 .. 0.79
   2 !   26.0   0.0   2.6e-09   7.5e-07     258     370 ..     840     955 ..     825     967 .. 0.90
   3 !    6.0   0.0     0.003      0.88     482     534 ..    1109    1160 ..    1079    1211 .. 0.72

  Alignments for each domain:
  == domain 1    score: 27.8 bits;  conditional E-value: 7.5e-10
   TIGR00643 260 LlqGdVGsGKTvVavlallavi....esG.......yqvalmaPTeiLAeQhyeklrelleplgievalLtgslkkkkkkelleeiasG...eielvv..GThallqekvefkeLalviiDEQhrFGveQRkkLrekgkek........iaphvLvmsATPIPRtlAltvygdld........vsiidelPlGrkpitt...klikekek..dkvyevveeeikkgrqvyvvyplieesekl...............elkaaealleelkkafpklnval.lhgrlksdekeevleeFrekevdiLvaTtviEvGvdvPnatvmv....iedaeR.....fGlsqLHQLRGRvgRge 554
                 L+    G+GKT Va+la+++ +    e+G        +++ +aP   LA+  + k+++ l+pl++ v   tg+++  k++ +  +i      + ++v   G  +l       ++++l iiDE h    e    +++   ++        +   ++ +sAT +P  l ++++  ++         s  + +Pl ++ i     ++++++ +  +  ye+  + +++g+qv v + + +e +++               +++aa        ++ ++++va   h+ ++ +++  v   F++++v++Lv+T  +  Gv++P  tv++    ++da R     +G+    Q+ GR gR +
  MMETSP1137-20121227|6454_1  11 LVCAPTGAGKTNVALLAIMQQVatafENGvlqrdklNKMVYVAPMKALAQEIVGKFSKALAPLALVVREYTGDMQLTKREIMATQILVTtpeKWDVVTrkGADTL------VQSVGLLIIDEVHLLNDERGPVIEAVVARTlrlvessqQMTRIVGLSAT-LPNYLDVALFLRVNpqsglfhfSSAYRPVPLKQTFIGItakNVAERNARmiEVTYEKALAALRNGKQVMVFVHARNETQRTaraladeatkrgxdgDVRAAAGAPAAGARQEGRRQVAQpHHAGMTRADRTLVEDLFSDGHVQVLVSTATLAWGVNLPAHTVIIkgtqVYDASRgafvdLGVLDVMQIFGRAGRPQ 360
                 677778*************97622224564443333478899**************************************9999985431113344433344444......4689*********88755555555544444677776667789999***9.899999988866653333333346789999999987551113444444488888999999************999**999999******************99999999999777776527899***************************************9888899**998888889999999999999965 PP

  == domain 2    score: 26.0 bits;  conditional E-value: 2.6e-09
   TIGR00643 258 nRLlqGdVGsGKTvVavlallavies..GyqvalmaPTeiLAeQhyekl.relleplgievalLtgslkkkkkkelleeiasGeielvvGThallqekvefkeLalviiDEQhrFG 370
                 n L+    GsGKTv a la+l+++++  G +++ +aP   L +  +++  ++++++lg++++ Ltg+++ ++++ ++++i + + e   G     q++   ++++lviiDE h  G
  MMETSP1137-20121227|6454_1 840 NVLVGAPTGSGKTVTAELAVLRLVRAhpGCKAVYIAPLKALVRERMQDWnAKFVKKLGLKMQELTGDVTPDSRALANATILATTPEKWDGVSRHWQQRAYVRKVSLVIIDEIHLLG 955
                 55666778***************98666*************99998886268999********************************************************99888 PP

  == domain 3    score: 6.0 bits;  conditional E-value: 0.003
   TIGR00643  482 klnvallhgrlksdekeevleeFrekevdiLvaTtviEvGvdvPnatvmvied 534 
                   + +++ h+ l++ ++  v + F e+++ +Lv+T  +  Gv+ P   ++v++ 
  MMETSP1137-20121227|6454_1 1109 AFGIGIHHAGLEDSDRILVEKLFLEQSIMVLVCTATLAWGVNFPAH-LVVVKG 1160
                  4568899999******9999************************65.555543 PP

>> TIGR01587  cas3_core: CRISPR-associated helicase Cas3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.8   0.2   7.2e-12   2.1e-09       2     242 ..      10     249 ..       9     257 .. 0.69
   2 !   14.2   0.0   1.3e-05    0.0039       2     153 ..     841     971 ..     840     976 .. 0.63

  Alignments for each domain:
  == domain 1    score: 34.8 bits;  conditional E-value: 7.2e-12
   TIGR01587   2 lvieAPtGyGKteaallwalk.........likkqkadkvifalPtratanamyerlkelfgselvlllksassrkikekgdseeleklvklysksnkkvflkpitvctidqvlksvlkevgeaeitlasianSvliiDEvhayeeytkalllallevlk......dvdvkillmsAtlp.....kllkeylekielveenealdlkeekrfe..nqrisliekdkleeisslerllealkkekkvliivNtVdrAqelyqkl 242
                 +++ APtG+GKt++all  ++          +++ k +k++++ P++a+a ++  ++++++   l l  +              e+   ++l+ ++   +++++i v+t+++  +   k    a++   s    +liiDEvh+++++    ++a++ +        +   +i+ +sAtlp      l+ + +++ +l  + +a+ + + k+    +   ++ e +    + + e+ l+al ++k+v+++v   ++ q    +l
  MMETSP1137-20121227|6454_1  10 MLVCAPTGAGKTNVALLAIMQqvatafengVLQRDKLNKMVYVAPMKALAQEIVGKFSKALAP-LALVVR--------------EYTGDMQLTKRE---IMATQILVTTPEKWDVVTRK---GADTLVQS--VGLLIIDEVHLLNDERGPVIEAVVARTLrlvessQQMTRIVGLSATLPnyldvALFLRVNPQSGLFHFSSAYRPVPLKQTFigITAKNVAERNARMIEVTYEKALAALRNGKQVMVFVHARNETQRTARAL 249
                 5799************9877755554555556788999************************5.666666..............566667777644...899*********97655555...44444444..468***********9988888887654421112223346778******77776666778888888888888887773333200222223333333333445566888888888888887666666655555 PP

  == domain 2    score: 14.2 bits;  conditional E-value: 1.3e-05
   TIGR01587   2 lvieAPtGyGKteaallwalklikkqkadkvifalPtratanamyerlkelfgselvlllk.sassrkikekgdseeleklvklysksnkkvflkpitvctidqvlksvlkevgeaeitlasianSvliiDEvhayeeytkalllallevlkd 153
                 +++ APtG+GKt +a l  l l+  +   k +++ P++a++ +  +  ++ f +  +l lk   ++      +ds +l++            ++   t++  d v   + +    a+++    + S++iiDE+h++ e+   +l++++ ++++
  MMETSP1137-20121227|6454_1 841 VLVGAPTGSGKTVTAELAVLRLVRAHPGCKAVYIAPLKALVRERMQDWNAKFVK--KLGLKmQELT--GDVTPDSRALAN-----------ATILATTPEKWDGVSRHWQQ---RAYVR----KVSLVIIDEIHLLGEERGPILEVIVSRMRY 971
                 6899************************************99988888888886..3333301111..111222222221...........22222233444444433333...22222....346777777777777777777777776665 PP

>> TIGR00614  recQ_fam: ATP-dependent DNA helicase, RecQ family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.5   0.0   6.8e-05      0.02     253     300 ..     282     329 ..     272     404 .. 0.69
   2 !   22.4   0.0   3.4e-08   9.9e-06       3     139 ..     814     954 ..     812     958 .. 0.84
   3 !   11.1   0.0   8.7e-05     0.026     253     319 ..    1112    1188 ..    1089    1227 .. 0.70

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 6.8e-05
   TIGR00614 253 aaaYhagleesarkevqkkflrdeiqvvvatvafGmGinkpdvRfvih 300
                 a+ +hag+  ++r+ v+  f+  ++qv+v+t     G+n p    +i 
  MMETSP1137-20121227|6454_1 282 AQPHHAGMTRADRTLVEDLFSDGHVQVLVSTATLAWGVNLPAHTVIIK 329
                 6779*************************9999999999887665554 PP

  == domain 2    score: 22.4 bits;  conditional E-value: 3.4e-08
   TIGR00614   3 lkkvfglesfrpvqlevinavlegr.dalvvmatGgGksLCyqlpavvs....dgl.tlvisPLisLmeDqvlqLkasdisatlLnsaqskeeakevladl.kdgklkllYvtPekvsksksllqkleerkkltliavDeahCi 139
                 +++ f +++f  vq ++ +++ +   ++lv  +tG Gk +   l+ + +    +g  ++ i+PL +L+++ ++  +a+ ++   L+ ++ +    +v+ d    ++  +l  tPek     +  q+    +k++l+++De+h +
  MMETSP1137-20121227|6454_1 814 FESIFSFSHFNAVQTQIFHTAYQTDaNVLVGAPTGSGKTVTAELAVLRLvrahPGCkAVYIAPLKALVRERMQDWNAKFVKKLGLKMQELTG---DVTPDSrALANATILATTPEKWDGVSRHWQQRAYVRKVSLVIIDEIHLL 954
                 6789******************99857777799********9999875422224542688*************9999999988887666555...67777746688899*********999999999999************65 PP

  == domain 3    score: 11.1 bits;  conditional E-value: 8.7e-05
   TIGR00614  253 aaaYhagleesarkevqkkflrdeiqvvvatvafGmGinkpdvRfvi....hyslpks......iesYYqesGRaGR 319 
                   + +hagle+s+r  v+k fl++ i v+v t     G+n p    v+    +y++  +      +    q +GRaGR
  MMETSP1137-20121227|6454_1 1112 IGIHHAGLEDSDRILVEKLFLEQSIMVLVCTATLAWGVNFPAHLVVVkgteYYDAKTKryvdfpVTDVLQMMGRAGR 1188
                  5679*************************999999999988766555222223332211222223445566666666 PP

>> TIGR01389  recQ: ATP-dependent DNA helicase RecQ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   0.0       2.3   6.6e+02      27      42 ..       6      21 ..       4      61 .. 0.85
   2 !    8.9   0.0   0.00034     0.099     250     295 ..     281     326 ..     261     421 .. 0.80
   3 ?    0.8   0.0      0.09        26     450     510 ..     653     713 ..     641     750 .. 0.84
   4 !   15.1   0.0   4.3e-06    0.0013       6     139 ..     815     954 ..     812    1005 .. 0.82
   5 !    8.0   0.0   0.00059      0.17     252     293 ..    1113    1154 ..    1099    1210 .. 0.84

  Alignments for each domain:
  == domain 1    score: -3.8 bits;  conditional E-value: 2.3
   TIGR01389 27 dgrdvlavlPtGGGks 42
                +++++l+  PtG Gk 
  MMETSP1137-20121227|6454_1  6 SQENMLVCAPTGAGKT 21
                6789999999999995 PP

  == domain 2    score: 8.9 bits;  conditional E-value: 0.00034
   TIGR01389 250 ealaYhaGlskkvRaeaqekFleddvkvvvatvaFGmGidksdvRf 295
                  a ++haG+ ++ R    + F   +v+v+v+t     G++ +    
  MMETSP1137-20121227|6454_1 281 VAQPHHAGMTRADRTLVEDLFSDGHVQVLVSTATLAWGVNLPAHTV 326
                 57899*************************9999999999876555 PP

  == domain 3    score: 0.8 bits;  conditional E-value: 0.09
   TIGR01389 450 gkdlsekelrslidqliaeglleeddeeysalqleeavkkvlkeevevllrekkvvkkekk 510
                  +++s +e+ +li++ ++ + l+ + +++ a++le +++++ +   +v+++ +  ++ +++
  MMETSP1137-20121227|6454_1 653 IREMSAREIGDLINNQRTAHALKAEAATLPAVSLEVSAQPITRTVLRVVVTVTAAFEWKDR 713
                 5899***************************************999999999888877763 PP

  == domain 4    score: 15.1 bits;  conditional E-value: 4.3e-06
   TIGR01389   6 kevFGyeeFRggqeeiieevl.dgrdvlavlPtGGGkslCYqvPaLll....kg.ltvvisPLisLmkDqvdqLraaGveaaalnstlsakeaqeilkalaagelklLYvaPerl..eqdkflellerlkiallavDeahCv 139
                 +++F +++F   q +i ++   ++ +vl+  PtG Gk +   +  L l    +g  +v i+PL +L+++ +++ +a+ v+   l  +  + + +   +ala++   +L  +Pe+   ++++ +++    k++l+ +De h +
  MMETSP1137-20121227|6454_1 815 ESIFSFSHFNAVQTQIFHTAYqTDANVLVGAPTGSGKTVTAELAVLRLvrahPGcKAVYIAPLKALVRERMQDWNAKFVKKLGLKMQELTGDVTPDSRALANA--TILATTPEKWdgVSRHWQQRAYVRKVSLVIIDEIHLL 954
                 578**************9876157899*************9988764422333425799**************999999988887766666666556666555..67999***9855689999999999*********9965 PP

  == domain 5    score: 8.0 bits;  conditional E-value: 0.00059
   TIGR01389  252 laYhaGlskkvRaeaqekFleddvkvvvatvaFGmGidksdv 293 
                  +++haGl+++ R    + Fle+   v+v t     G++ +  
  MMETSP1137-20121227|6454_1 1113 GIHHAGLEDSDRILVEKLFLEQSIMVLVCTATLAWGVNFPAH 1154
                  679*************************99999999997754 PP

>> TIGR04095  dnd_restrict_1: DNA phosphorothioation system restriction enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.1     0.063        19      33      74 ..      16      66 ..       8     149 .. 0.69
   2 ?    1.3   0.0     0.098        29     320     358 ..     286     324 ..     238     331 .. 0.89
   3 !   13.2   0.0   2.4e-05     0.007      32     149 ..     846     958 ..     824     972 .. 0.77

  Alignments for each domain:
  == domain 1    score: 1.9 bits;  conditional E-value: 0.063
   TIGR04095 33 tGtGktltaLalvskl.........aekikslvvvvvvPykhLveqWakea 74
                tG+Gkt  aL ++++           ++ k   +v v+P k L++  +   
  MMETSP1137-20121227|6454_1 16 TGAGKTNVALLAIMQQvatafengvLQRDKLNKMVYVAPMKALAQEIVGKF 66
                9********998887668888777766777777888899998887665554 PP

  == domain 2    score: 1.3 bits;  conditional E-value: 0.098
   TIGR04095 320 taeeskeeReellkqfesgelqalvairCLDeGvDvPai 358
                  a   +++R+ +   f++g++q+lv+   L  Gv++Pa 
  MMETSP1137-20121227|6454_1 286 HAGMTRADRTLVEDLFSDGHVQVLVSTATLAWGVNLPAH 324
                 555667788889999**********************85 PP

  == domain 3    score: 13.2 bits;  conditional E-value: 2.4e-05
   TIGR04095  32 atGtGktltaLalvsklaekikslvvvvvvPykhLveqWakeaekFglepilayesvsrWqkelsekleelsskakkllliittnatlkeek.FqsqlrllkkkllliaDeahnlGakr 149
                  tG+Gkt+ta  +v +l +       v ++P k Lv+  +++   ++ + ++  + +   ++el   ++  s    + +++ tt +   + +   +q  +++k  l+i De+h lG +r
  MMETSP1137-20121227|6454_1 846 PTGSGKTVTAELAVLRLVRAHPGCKAVYIAPLKALVRERMQD---WNAKFVKKLGLK---MQELTGDVTPDSRALANATILATTPEKWDGVSrHWQQRAYVRKVSLVIIDEIHLLGEER 958
                 6****************999999*************976555...566666655543...56788888876666677777777777776655244445577888999999999999775 PP

>> TIGR03158  cas3_cyano: CRISPR-associated helicase Cas3, subtype CYANO
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.8   0.1   0.00028     0.081      17     190 ..      10     164 ..       5     176 .. 0.68
   2 ?   -1.7   0.0      0.89   2.6e+02     319     343 ..     306     330 ..     301     340 .. 0.87
   3 ?    4.3   0.0     0.013       3.9       5      57 ..     830     886 ..     826     906 .. 0.67
   4 ?   -0.0   0.0      0.27        79     142     159 ..     939     956 ..     907     987 .. 0.79
   5 ?   -2.5   0.0       1.5   4.5e+02     319     341 ..    1136    1158 ..    1132    1187 .. 0.85

  Alignments for each domain:
  == domain 1    score: 9.8 bits;  conditional E-value: 0.00028
   TIGR03158  17 llntAptGaGKtlaalvevlseeldtialyPtNaLiedqekaikelvdvlkperdvellavskatlkDlkeyatdkvgekkGevlstlLrdalstsetvilltNPDiFvllrrrvyidrsdeaaklytkfsvvifDEFHlydakqlasllfl.ldemqlirteecrrklvfLsAt 190
                 +l  AptGaGKt+ al+ ++++   ++     N + +  + +   +v  +k+  +  + + sk +l+     a   v+e  G++  t  r+      t+il+t P+ +  ++r+       +a++l + + ++i+DE Hl + ++   +  +   + +l+++ ++  ++v LsAt
  MMETSP1137-20121227|6454_1  10 MLVCAPTGAGKTNVALLAIMQQVATAFE----NGVLQRDKLNKMVYVAPMKALAQEIVGKFSK-ALAP---LA-LVVREYTGDMQLTK-RE---IMATQILVTTPEKWDVVTRK-------GADTLVQSVGLLIIDEVHLLNDERGPVIEAVvARTLRLVESSQQMTRIVGLSAT 164
                 6778**************9999866666....6666555555556666677777766666666.4444...44.45677777754333.44...44567999999988877764.......566777889999999999987765444433304556677777777888888888 PP

  == domain 2    score: -1.7 bits;  conditional E-value: 0.89
   TIGR03158 319 fdillgtsavdvGvdFktdfliFsa 343
                 +++l++t+++  Gv+   + +i + 
  MMETSP1137-20121227|6454_1 306 VQVLVSTATLAWGVNLPAHTVIIKG 330
                 79*****************999765 PP

  == domain 3    score: 4.3 bits;  conditional E-value: 0.013
   TIGR03158   5 vlealkekdadvllntAptGaGKtlaalvevl.....seeldtialyPtNaLiedqek 57 
                 ++++  + da+vl   AptG+GKt +a + vl     + + +++ + P  aL+++  +
  MMETSP1137-20121227|6454_1 830 IFHTAYQTDANVL-VGAPTGSGKTVTAELAVLrlvraHPGCKAVYIAPLKALVRERMQ 886
                 5555555566655.57********8765554412222455666666699999887654 PP

  == domain 4    score: -0.0 bits;  conditional E-value: 0.27
   TIGR03158 142 lytkfsvvifDEFHlyda 159
                 + +k+s+vi+DE Hl   
  MMETSP1137-20121227|6454_1 939 YVRKVSLVIIDEIHLLGE 956
                 3389**********9765 PP

  == domain 5    score: -2.5 bits;  conditional E-value: 1.5
   TIGR03158  319 fdillgtsavdvGvdFktdfliF 341 
                  + +l+ t+++  Gv+F  + ++ 
  MMETSP1137-20121227|6454_1 1136 IMVLVCTATLAWGVNFPAHLVVV 1158
                  5689************9997765 PP

>> TIGR00595  priA: primosomal protein N'
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.2     0.042        12       6     211 ..      16     239 ..      11     246 .. 0.59
   2 !    4.2   0.1    0.0095       2.8     310     386 ..     300     379 ..     278     398 .. 0.69
   3 !    7.4   0.0     0.001       0.3     311     385 ..    1131    1205 ..    1119    1226 .. 0.81

  Alignments for each domain:
  == domain 1    score: 2.1 bits;  conditional E-value: 0.042
   TIGR00595   6 tGSGKtEvylkviek.........vlakgk..svlvLvPEiaLtaqllkrlkerfgsevavl.hsk..lsasekkqawrkvk..lgeakvviGarSalflPlknLgliivDEEHdssyKqeel.pryhardvavvrakkenipvvlgSAt.Ps.lesyenvkqkkyrllvlkrrvsgaelpevklvdlkkekkqknksllssellealeetlekgeqallFlnrR 211
                 tG+GKt v l +i +         vl+++k  + +++ P  aL++ ++ ++ +++   + v+ ++   ++ ++++ + +++   + e+  v+ +r    + ++ +gl+i+DE H        +     ar++ +v + ++  ++v  SAt P  l+    ++ +  + l     + +  + +++ + + +++  ++++ + +   e+    l +g+q+++F+  R
  MMETSP1137-20121227|6454_1  16 TGAGKTNVALLAIMQqvatafengVLQRDKlnKMVYVAPMKALAQEIVGKFSKALAPLALVVrEYTgdMQLTKREIMATQILvtTPEKWDVV-TRKGADTLVQSVGLLIIDEVHLLNDERGPViEAVVARTLRLVESSQQMTRIVGLSATlPNyLDVALFLRVNPQSGLFHFSSAYRPVPLKQTFIGITAKNVAERNARMIEVTYEKALAALRNGKQVMVFVHAR 239
                 89999999877765512222222234455433677888999999999999999987654443144344665666555555541033444455.45555666899*********9876655555456778999999998888888888888554233333333333333322233444445566677766666655555555555555666777788888887777 PP

  == domain 2    score: 4.2 bits;  conditional E-value: 0.0095
   TIGR00595 310 qfaagkidiliGtqmiaKGldfpkvtlvgvlsaDsglklpdfRaaErtfqlltqvaGRagRaekp.....gevliqtvnPeh 386
                  f++g++++l+ t  +a G+++p+ t  +++++ ++   +     +  +  ++q+ GRagR + +     g ++ q  + +h
  MMETSP1137-20121227|6454_1 300 LFSDGHVQVLVSTATLAWGVNLPAHT--VIIKGTQVYDASRGAFVDLGVLDVMQIFGRAGRPQFDtaggeGIIITQHAKLAH 379
                 488999*****************865..567766665555444567777889*********764322211445555444444 PP

  == domain 3    score: 7.4 bits;  conditional E-value: 0.001
   TIGR00595  311 faagkidiliGtqmiaKGldfpkvtlvgvlsaDsglklpdfRaaErtfqlltqvaGRagRae..kpgevliqtvnPe 385 
                  f ++ i +l+ t  +a G++fp+   ++v+++         R  +  ++ + q++GRagR +  + g   i  ++P+
  MMETSP1137-20121227|6454_1 1131 FLEQSIMVLVCTATLAWGVNFPA--HLVVVKGTEYYDAKTKRYVDFPVTDVLQMMGRAGRPQfdDRGVASILVHEPK 1205
                  67899*****************7..4667889999999999*******************76113444445555555 PP

>> TIGR00580  mfd: transcription-repair coupling factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.0     0.067        20     474     498 ..      11      35 ..       5     127 .. 0.82
   2 !    7.0   0.0    0.0011      0.33     691     754 ..     286     358 ..     280     363 .. 0.75
   3 ?    3.5   0.0     0.013       3.8     687     766 ..    1112    1202 ..    1094    1207 .. 0.72

  Alignments for each domain:
  == domain 1    score: 1.1 bits;  conditional E-value: 0.067
   TIGR00580 474 lvcGDvGfGKTEvamrAafkavldg 498
                 lvc   G GKT va+ A+++ v   
  MMETSP1137-20121227|6454_1  11 LVCAPTGAGKTNVALLAIMQQVATA 35 
                 9****************99877654 PP

  == domain 2    score: 7.0 bits;  conditional E-value: 0.0011
   TIGR00580 691 HgqmeeeeleevmleFlkkefdvLvcTtiiEsGidipnaNTiiierAd..........kfGlaqLyQLrGRvGR 754
                 H+ m+  +   v   F +++++vLv+T+ +  G+++p a T+ii+  +           +G+ +  Q+ GR GR
  MMETSP1137-20121227|6454_1 286 HAGMTRADRTLVEDLFSDGHVQVLVSTATLAWGVNLP-AHTVIIKGTQvydasrgafvDLGVLDVMQIFGRAGR 358
                 777887777778888*********************9.789998866522222222223577778888888887 PP

  == domain 3    score: 3.5 bits;  conditional E-value: 0.013
   TIGR00580  687 iaiaHgqmeeeeleevmleFlkkefdvLvcTtiiEsGidipnaNTiiie.....rAdk.....fGlaqLyQLrGRvGRsk..kkayayllvp 766 
                  i+i H+ +e+++   v + Fl++++ vLvcT+ +  G++ p    ++++     +A +     f +++  Q+ GR GR +   ++ a +lv+
  MMETSP1137-20121227|6454_1 1112 IGIHHAGLEDSDRILVEKLFLEQSIMVLVCTATLAWGVNFPA-HLVVVKgteyyDAKTkryvdFPVTDVLQMMGRAGRPQfdDRGVASILVH 1202
                  7899999999888888899********************995.4555541222223322333378888889999988854225666666655 PP

>> TIGR02782  TrbB_P: P-type conjugative transfer ATPase TrbB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   0.0     0.011       3.3     132     163 ..       3      35 ..       2      43 .. 0.80
   2 !    7.4   0.0    0.0017       0.5     123     168 ..     825     870 ..     819     880 .. 0.83

  Alignments for each domain:
  == domain 1    score: 4.7 bits;  conditional E-value: 0.011
   TIGR02782 132 avaarknilvvGGtgsGkttLan.allaeiaks 163
                 a+ +++n+lv   tg+Gkt +a  a+++++a++
  MMETSP1137-20121227|6454_1   3 ALYSQENMLVCAPTGAGKTNVALlAIMQQVATA 35 
                 56799**************99853777777765 PP

  == domain 2    score: 7.4 bits;  conditional E-value: 0.0017
   TIGR02782 123 aaqadvlreavaarknilvvGGtgsGkttLanallaeiaksapddr 168
                 a q+++++ a ++  n+lv   tgsGkt  a   + ++++++p+ +
  MMETSP1137-20121227|6454_1 825 AVQTQIFHTAYQTDANVLVGAPTGSGKTVTAELAVLRLVRAHPGCK 870
                 67899999********************999877777777766655 PP

>> TIGR03117  cas_csf4: CRISPR type AFERR-associated DEAD/DEAH-box helicase Csf4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.1       0.5   1.5e+02      19      68 ..      10      68 ..       4      97 .. 0.69
   2 ?   -2.6   0.0         1     3e+02     240     261 ..     111     133 ..      87     154 .. 0.75
   3 !   13.3   0.1   1.6e-05    0.0047      11      67 ..     833     889 ..     826     905 .. 0.89

  Alignments for each domain:
  == domain 1    score: -1.6 bits;  conditional E-value: 0.5
   TIGR03117 19 alveaatGvGktlamllaaea.........llkerpdakvaiavPtlalldqlleeyer 68
                +lv a tG Gkt   lla+ +         +l+  + +k++  +P  al ++++ ++ +
  MMETSP1137-20121227|6454_1 10 MLVCAPTGAGKTNVALLAIMQqvatafengVLQRDKLNKMVYVAPMKALAQEIVGKFSK 68
                578899******87777765411111111123344447777777777777777666655 PP

  == domain 2    score: -2.6 bits;  conditional E-value: 1
   TIGR03117 240 glgll.pqldlLvvDeahlleda 261
                 g++ l   + lL++De hll+d 
  MMETSP1137-20121227|6454_1 111 GADTLvQSVGLLIIDEVHLLNDE 133
                 55554145789*********986 PP

  == domain 3    score: 13.3 bits;  conditional E-value: 1.6e-05
   TIGR03117  11 dalelkrialveaatGvGktlamllaaeallkerpdakvaiavPtlalldqlleeye 67 
                 +a + +   lv a tG Gkt    la++ l++ +p+ k +  +P  al+++ +++++
  MMETSP1137-20121227|6454_1 833 TAYQTDANVLVGAPTGSGKTVTAELAVLRLVRAHPGCKAVYIAPLKALVRERMQDWN 889
                 6777777889*****************************************999997 PP

>> TIGR02928  TIGR02928: orc1/cdc6 family replication initiation protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.0     0.025       7.4      41      70 ..       8      38 ..       5      67 .. 0.76
   2 !    5.7   0.0    0.0041       1.2      40     176 ..     838     989 ..     829     997 .. 0.53

  Alignments for each domain:
  == domain 1    score: 3.1 bits;  conditional E-value: 0.025
   TIGR02928 41 snvliyGktGtGKtavtk.kvlkeleeaaee 70
                +n+l+  +tG GKt v+  ++++++++a e+
  MMETSP1137-20121227|6454_1  8 ENMLVCAPTGAGKTNVALlAIMQQVATAFEN 38
                799***********98752567777766654 PP

  == domain 2    score: 5.7 bits;  conditional E-value: 0.0041
   TIGR02928  40 psnvliyGktGtGKtavtkkvlkeleeaaeekdvr.vs..tvyvnCqelsteyqvlvelvnql..aeseeevpetGlstkev.......feel...vkeleeredsliivLDEiDklvkkeadelL.yeLsraeengdlekakvsvigisndl 176
                   nvl+  +tG+GKt++++  + +l +a   +++  ++   + v+ + ++ + + + +l  ++   + ++++  + l+++++       ++ +   +++     ++ ++++DEi  l  +e+  +L   +sr++ + + ++++v ++g+s  +
  MMETSP1137-20121227|6454_1 838 DANVLVGAPTGSGKTVTAELAVLRLVRAHPGCKAVyIAplKALVRERMQDWNAKFVKKLGLKMqeLTGDVTPDSRALANATIlattpekWDGVsrhWQQRAYVRKVSLVIIDEIHLL-GEERGPILeVIVSRMRYMAERQGQPVRIVGLSTAM 989
                 579999999******999988888877776653332221112233333444444444443333432223333333333333322222224444000333334456777778888777.34444444134567777777777777777777665 PP

>> TIGR02785  addA_Gpos: helicase-exonuclease AddAB, AddA subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   0.0    0.0044       1.3      13      42 ..       6      35 ..       3      72 .. 0.84
   2 ?    3.8   0.1    0.0071       2.1       9      29 ..     833     853 ..     825     865 .. 0.83

  Alignments for each domain:
  == domain 1    score: 4.5 bits;  conditional E-value: 0.0044
   TIGR02785 13 kgqdiLVsAsAGSGKTaVLveRiikkilsg 42
                + +++LV A  G GKT V    i++++++ 
  MMETSP1137-20121227|6454_1  6 SQENMLVCAPTGAGKTNVALLAIMQQVATA 35
                568***********************9865 PP

  == domain 2    score: 3.8 bits;  conditional E-value: 0.0071
   TIGR02785   9 aivakgqdiLVsAsAGSGKTa 29 
                 + ++++ ++LV A  GSGKT+
  MMETSP1137-20121227|6454_1 833 TAYQTDANVLVGAPTGSGKTV 853
                 56899**************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1636 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       170  (0.0414432); expected 82.0 (0.02)
Passed bias filter:                      119  (0.0290102); expected 82.0 (0.02)
Passed Vit filter:                        29  (0.00706972); expected 4.1 (0.001)
Passed Fwd filter:                        14  (0.00341297); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 1.50u 0.18s 00:00:01.68 Elapsed: 00:00:01.25
# Mc/sec: 1727.47
//
Query:       MMETSP1137-20121227|6455_1  [L=100]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (100 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        37  (0.00901999); expected 82.0 (0.02)
Passed bias filter:                       36  (0.00877621); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.12s 00:00:00.26 Elapsed: 00:00:00.26
# Mc/sec: 507.65
//
Query:       MMETSP1137-20121227|6456_1  [L=199]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (199 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        53  (0.0129205); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.15s 00:00:00.35 Elapsed: 00:00:00.32
# Mc/sec: 820.81
//
Query:       MMETSP1137-20121227|6457_1  [L=275]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (275 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        35  (0.00853242); expected 82.0 (0.02)
Passed bias filter:                       35  (0.00853242); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.13s 00:00:00.34 Elapsed: 00:00:00.30
# Mc/sec: 1209.90
//
Query:       MMETSP1137-20121227|6458_1  [L=329]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (329 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       149  (0.0363237); expected 82.0 (0.02)
Passed bias filter:                      106  (0.0258411); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.14s 00:00:00.42 Elapsed: 00:00:00.32
# Mc/sec: 1357.01
//
Query:       MMETSP1137-20121227|6459_1  [L=38]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (38 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        95  (0.0231594); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.15s 00:00:00.25 Elapsed: 00:00:00.32
# Mc/sec: 156.74
//
Query:       MMETSP1137-20121227|6461_1  [L=161]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.2e-47  158.4   0.0    5.9e-47  158.2   0.0    1.0  1  TIGR00232 tktlase_bact: transketolase


Domain annotation for each model (and alignments):
>> TIGR00232  tktlase_bact: transketolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  158.2   0.0   1.4e-50   5.9e-47       3      99 ..      64     160 ..      62     161 .] 0.97

  Alignments for each domain:
  == domain 1    score: 158.2 bits;  conditional E-value: 1.4e-50
   TIGR00232   3 lvnairlLavdaiekaksGhpGaplGlapiaevlwkkflklnPtnpkWinRDRfvlsaGhgsmllYsllhllGydlsiedlkqfrqlesktpghPel 99 
                  +  +r+L +++++ a sGhpGa++G ap+a+ lw++f+k++P++pkWinRDRfvls+Gh+++llYs+lhl+Gyd+si+dl++frql+s tpghPe+
  MMETSP1137-20121227|6461_1  64 CIDYVRVLGAEMVQTAXSGHPGAAMGCAPMAHLLWSRFMKYDPKEPKWINRDRFVLSNGHACALLYSMLHLTGYDISIDDLQNFRQLDSITPGHPEN 160
                 56779*******************************************************************************************6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (161 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        88  (0.0214529); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.17u 0.14s 00:00:00.31 Elapsed: 00:00:00.31
# Mc/sec: 685.49
//
Query:       MMETSP1137-20121227|6462_1  [L=572]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.048   10.3   4.6      0.069    9.8   3.2    1.2  1  TIGR01000 bacteriocin_acc: bacteriocin secretion accessory protein


Domain annotation for each model (and alignments):
>> TIGR01000  bacteriocin_acc: bacteriocin secretion accessory protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   3.2   1.7e-05     0.069     133     242 ..     149     259 ..     119     298 .. 0.65

  Alignments for each domain:
  == domain 1    score: 9.8 bits;  conditional E-value: 1.7e-05
   TIGR01000 133 ttDsFGYenllksyla.qvesltaelqqqnekketqneaaektkaelkkqiskteqklqeyqaiknaissntkvsesskylslYenyqaqlkeaeekddkeqvksqilasv 242
                 ++D++G+e  l ++l+  v+     + +++e+ e+qn+   +   e kkqi   +++++e q+  + +  +  v+es  +  + +  q ql+++e+k +  q k+q++ ++
  MMETSP1137-20121227|6462_1 149 EKDKYGFERDLMDFLQiLVDEQDRRVAKAKERYEAQNDVPPEIPPETKKQIDLLKEQIKELQTQSEVLGEQGDVDESMAAFNKANAMQLQLQAIEQKAQPVQPKKQFVDEI 259
                 456666666666665523555666666666666666666666666666666666777777766666666666666666666666666666666666666666666666544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (572 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       168  (0.0409556); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.15s 00:00:00.55 Elapsed: 00:00:00.46
# Mc/sec: 1641.26
//
Query:       MMETSP1137-20121227|6464_1  [L=208]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0012   16.7   0.1     0.0022   15.8   0.1    1.4  1  TIGR02953 penta_MxKDx: pentapeptide MXKDX repeat protein


Domain annotation for each model (and alignments):
>> TIGR02953  penta_MxKDx: pentapeptide MXKDX repeat protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.1   5.3e-07    0.0022      35      68 ..      90     123 ..      72     127 .. 0.76

  Alignments for each domain:
  == domain 1    score: 15.8 bits;  conditional E-value: 5.3e-07
   TIGR02953  35 kDaMkkdamakdaMskDamkkdamkkdamkkdgM 68 
                 k +M++  +++ aM++ am++ am++ am+++++
  MMETSP1137-20121227|6464_1  90 KAGMQQAGLQQAAMQQAAMQQAAMQQAAMHQAAL 123
                 5667777777777777777777777777777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (208 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       218  (0.0531448); expected 82.0 (0.02)
Passed bias filter:                      105  (0.0255973); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.21u 0.11s 00:00:00.32 Elapsed: 00:00:00.41
# Mc/sec: 669.60
//
Query:       MMETSP1137-20121227|6465_1  [L=84]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (84 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        52  (0.0126767); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.13s 00:00:00.26 Elapsed: 00:00:00.25
# Mc/sec: 443.48
//
Query:       MMETSP1137-20121227|6466_1  [L=88]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-17   61.8   0.0    1.5e-17   61.7   0.0    1.0  1  TIGR00677 fadh2_euk: methylenetetrahydrofolate reductase
    9.5e-14   49.2   0.0      1e-13   49.1   0.0    1.0  1  TIGR00676 fadh2: 5,10-methylenetetrahydrofolate reductase


Domain annotation for each model (and alignments):
>> TIGR00677  fadh2_euk: methylenetetrahydrofolate reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.7   0.0   7.1e-21   1.5e-17     197     279 ..       1      86 [.       1      88 [] 0.93

  Alignments for each domain:
  == domain 1    score: 61.7 bits;  conditional E-value: 7.1e-21
   TIGR00677 197 mPinsyksflrlvklskvkiPqeilsalepikdddea..vreiGielivelckkllasg.vkslhlytlnlekaaleilerlglld 279
                 mP+n+y +f+r+++++k++iP ++ +++e +k dd+     ++Gie +  lc+kl++s+ v +lh+y+ln    + +il+rl+ l+
  MMETSP1137-20121227|6466_1   1 MPLNAYGGFKRMTGFCKTHIPPAMAEKIETLKGDDQKqeFIDFGIEYVATLCEKLVSSKlVPGLHFYALNQSERTYQILRRLKYLK 86 
                 9*******************************99875226699***************99*********************98775 PP

>> TIGR00676  fadh2: 5,10-methylenetetrahydrofolate reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.1   0.0     5e-17     1e-13     195     274 ..       1      82 [.       1      83 [. 0.88

  Alignments for each domain:
  == domain 1    score: 49.1 bits;  conditional E-value: 5e-17
   TIGR00676 195 mpitnlkqllrlleklsgveiPeklvkeleklen..dkeevrevgievaveqveeLlaeg.vpglHfytlnkaeatkeilenl 274
                 mp++     +r++   ++++iP  +++++e l+   +k+e+ ++gie+++ ++e+L++++ vpglHfy ln++e t++il++l
  MMETSP1137-20121227|6466_1   1 MPLNAYGGFKRMTG-FCKTHIPPAMAEKIETLKGddQKQEFIDFGIEYVATLCEKLVSSKlVPGLHFYALNQSERTYQILRRL 82 
                 78888888899999.999************9986225678889*************987659*****************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (88 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        89  (0.0216967); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.15u 0.14s 00:00:00.29 Elapsed: 00:00:00.27
# Mc/sec: 430.19
//
Query:       MMETSP1137-20121227|6467_1  [L=449]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (449 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        53  (0.0129205); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.15s 00:00:00.43 Elapsed: 00:00:00.40
# Mc/sec: 1481.58
//
Query:       MMETSP1137-20121227|6468_1  [L=110]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (110 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        25  (0.00609459); expected 82.0 (0.02)
Passed bias filter:                       24  (0.0058508); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.14s 00:00:00.28 Elapsed: 00:00:00.33
# Mc/sec: 439.96
//
Query:       MMETSP1137-20121227|6469_1  [L=48]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (48 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        44  (0.0107265); expected 82.0 (0.02)
Passed bias filter:                       39  (0.00950756); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.13s 00:00:00.24 Elapsed: 00:00:00.27
# Mc/sec: 234.65
//
Query:       MMETSP1137-20121227|6470_1  [L=385]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (385 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        99  (0.0241346); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.15s 00:00:00.43 Elapsed: 00:00:00.43
# Mc/sec: 1181.76
//
Query:       MMETSP1137-20121227|6471_1  [L=85]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (85 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        29  (0.00706972); expected 82.0 (0.02)
Passed bias filter:                       29  (0.00706972); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.15s 00:00:00.27 Elapsed: 00:00:00.30
# Mc/sec: 373.97
//
Query:       MMETSP1137-20121227|6472_1  [L=466]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (466 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       422  (0.102877); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.18s 00:00:00.56 Elapsed: 00:00:00.45
# Mc/sec: 1366.82
//
Query:       MMETSP1137-20121227|6473_1  [L=308]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (308 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        78  (0.0190151); expected 82.0 (0.02)
Passed bias filter:                       39  (0.00950756); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.17s 00:00:00.40 Elapsed: 00:00:00.28
# Mc/sec: 1451.88
//
Query:       MMETSP1137-20121227|6474_1  [L=242]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0073   13.9   0.0      0.011   13.4   0.0    1.2  1  TIGR03137 AhpC: peroxiredoxin


Domain annotation for each model (and alignments):
>> TIGR03137  AhpC: peroxiredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.0   2.6e-06     0.011      25      74 ..      87     136 ..      77     140 .. 0.90

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 2.6e-06
   TIGR03137  25 tdedlkGkwsvlvfypadftfvcpteledladkyeelkelgvevysvstd 74 
                  +  +kGk ++l+fy ad +  c  +l+ ++ +   lk+ gv +  +  d
  MMETSP1137-20121227|6474_1  87 RNLGVKGKPAILFFYGADDAPSCSKQLKSFDLELPGLKQRGVAIVGIRND 136
                 56679*************************************99888766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (242 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        63  (0.0153584); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.20u 0.15s 00:00:00.35 Elapsed: 00:00:01.42
# Mc/sec: 224.94
//
Query:       MMETSP1137-20121227|6475_1  [L=208]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (208 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       127  (0.0309605); expected 82.0 (0.02)
Passed bias filter:                      101  (0.0246221); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.12s 00:00:00.32 Elapsed: 00:00:00.32
# Mc/sec: 857.93
//
Query:       MMETSP1137-20121227|6477_1  [L=107]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (107 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        39  (0.00950756); expected 82.0 (0.02)
Passed bias filter:                       35  (0.00853242); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.15s 00:00:00.29 Elapsed: 00:00:00.26
# Mc/sec: 543.19
//
Query:       MMETSP1137-20121227|6478_1  [L=84]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (84 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        63  (0.0153584); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.45
# Mc/sec: 246.38
//
Query:       MMETSP1137-20121227|6479_1  [L=220]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (220 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        29  (0.00706972); expected 82.0 (0.02)
Passed bias filter:                       21  (0.00511945); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.12s 00:00:00.30 Elapsed: 00:00:00.39
# Mc/sec: 744.55
//
Query:       MMETSP1137-20121227|6480_1  [L=195]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.3e-08   30.4   0.0    1.2e-07   29.7   0.0    1.4  1  TIGR02378 nirD_assim_sml: nitrite reductase [NAD(P)H], small subunit


Domain annotation for each model (and alignments):
>> TIGR02378  nirD_assim_sml: nitrite reductase [NAD(P)H], small subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.7   0.0     3e-11   1.2e-07       3     102 ..      42     138 ..      40     142 .. 0.84

  Alignments for each domain:
  == domain 1    score: 29.7 bits;  conditional E-value: 3e-11
   TIGR02378   3 qavckleelpee.sgvavklddeqlAiFrvkkkevyAiqnlcPhkrafvlsrGlvgdaegelvvacPlhkrkfeLedGkcleddevsvktfevrvedgrvl 102
                 + vc++ +l++e   v v ++ + + + r+ +++++ ++ lc h  a++l  G +++ +g+ +++cP h  k++L++G+ l    v +      +edg+v 
  MMETSP1137-20121227|6480_1  42 HIVCNAAKLKHEgCRVHVVVNGRRVSVLRT-DSGLHCMDSLCYHG-AGPLTSGDIEEVNGRECIVCPWHGYKVTLDTGEKLYRSTVFIDG--NXEEDGQVV 138
                 579******9995567899***********.566**********9.********************************998776665543..334555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (195 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       106  (0.0258411); expected 82.0 (0.02)
Passed bias filter:                       96  (0.0234032); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.20u 0.17s 00:00:00.37 Elapsed: 00:00:00.59
# Mc/sec: 436.24
//
Query:       MMETSP1137-20121227|6481_1  [L=767]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.1e-19   66.7   0.0    2.9e-19   66.3   0.0    1.1  1  TIGR03903 TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
    5.9e-07   27.0   0.0    9.4e-07   26.3   0.0    1.2  1  TIGR03724 arch_bud32: Kae1-associated kinase Bud32


Domain annotation for each model (and alignments):
>> TIGR03903  TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.3   0.0   1.4e-22   2.9e-19      11     240 ..     172     400 ..     165     408 .. 0.86

  Alignments for each domain:
  == domain 1    score: 66.3 bits;  conditional E-value: 1.4e-22
   TIGR03903  11 lRedaaeeerlvaRFrReialCarLshPnivaLlDsGeaedgllFavFeyveGrtlrevLaad.GaLpaaetgrLmlqvLDalaaahdaGvvhRDLkPqnimvsaadveshakvLDFGigaLlpgvedadeatltrttevlGsPaYaaPeqLRge...pvtaksDlYaWGLivleCLtGkrvvqGa..svaevlykqLsPvdvslPsaiaghpLg.evLRkalnkdvrqRaasaeal 240
                 l++  ae+e+     r e a+   L hPniv++ +s eae + +  v e+  G  l e L         a  ++L  ++L a+   h++G vhRD+k +nim  ++    + k++DFG +  +    +         +   G+ +Y aPe L      p  +  Dl++ G+ +   L G++  + +   v+++l ++ +P   s P +    pL+ + +R  ++k++  R  +++al
  MMETSP1137-20121227|6481_1 172 LKTVFAEDEQMLEEMRQECAIQRSLDHPNIVRVYESFEAEGDAVHIVMELCSGGNLVEKLRESpRGFEEAAAAELAKKILSAIYYMHQRGFVHRDIKLDNIMYENRLPGAEPKLIDFGFACKVKKGAE-------SIHGRYGTLSYMAPELLDTKergPYESSVDLWSIGVTLYTLLSGRKPFDHEdrEVKKILIREATPS-YSGPRWARLSPLAvDFVRCLMHKEPSLRLSASQAL 400
                 45556789**************************************************9987623467777899********************************************9875544333.......457778**********9764233666788****************9886542279*********96.799*********86899********9998888877 PP

>> TIGR03724  arch_bud32: Kae1-associated kinase Bud32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.3   0.0   4.6e-10   9.4e-07      59     139 ..     202     294 ..     179     302 .. 0.81

  Alignments for each domain:
  == domain 1    score: 26.3 bits;  conditional E-value: 4.6e-10
   TIGR03724  59 vntPvvydvdpeekkivmeyiegkklkdlleekel........ellkevGelvgklHkagivhgDlttsNiivk....ddklyliDfGLgkks 139
                 v++   ++ + ++ +ivme  +g +l + l+e+          el+k++  ++  +H+ g+vh D+   Ni+++    + +  liDfG + k 
  MMETSP1137-20121227|6481_1 202 VRVYESFEAEGDAVHIVMELCSGGNLVEKLRESPRgfeeaaaaELAKKILSAIYYMHQRGFVHRDIKLDNIMYEnrlpGAEPKLIDFGFACKV 294
                 455556677788999***************99877899999999*****************************7566678999*****98664 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (767 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        71  (0.0173086); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.13s 00:00:00.62 Elapsed: 00:00:00.63
# Mc/sec: 1606.91
//
Query:       MMETSP1137-20121227|6482_1  [L=79]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (79 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        59  (0.0143832); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.14s 00:00:00.27 Elapsed: 00:00:00.31
# Mc/sec: 336.36
//
Query:       MMETSP1137-20121227|6484_1  [L=259]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.9e-33  113.6   1.1    2.9e-33  113.0   0.8    1.3  1  TIGR01963 PHB_DH: 3-hydroxybutyrate dehydrogenase
    6.6e-33  112.2   0.4    8.5e-33  111.9   0.3    1.1  1  TIGR01830 3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase
    4.3e-28   96.2   4.5    5.9e-28   95.7   3.1    1.1  1  TIGR03206 benzo_BadH: 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase
    1.5e-24   84.9   1.8    2.6e-24   84.1   1.2    1.3  1  TIGR01829 AcAcCoA_reduct: acetoacetyl-CoA reductase
    1.3e-23   81.5   0.8    1.7e-23   81.2   0.6    1.1  1  TIGR02415 23BDH: acetoin reductases
    1.2e-21   75.2   4.4    1.9e-20   71.3   3.1    2.0  1  TIGR03971 SDR_subfam_1: oxidoreductase, SDR family
    5.4e-21   73.0   0.6    7.5e-21   72.6   0.4    1.1  1  TIGR01832 kduD: 2-deoxy-D-gluconate 3-dehydrogenase
    5.7e-18   63.0   0.8    8.1e-18   62.5   0.6    1.2  1  TIGR01831 fabG_rel: putative 3-oxoacyl-(acyl-carrier-protein) reductase
    3.1e-17   60.5   1.9    4.7e-17   59.9   1.3    1.2  1  TIGR03325 BphB_TodD: cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase
    3.6e-11   40.0   0.9    4.6e-11   39.6   0.6    1.0  1  TIGR02632 RhaD_aldol-ADH: rhamnulose-1-phosphate aldolase/alcohol dehydrogenase
    5.6e-09   33.6   0.0      1e-06   26.2   0.0    2.1  1  TIGR01500 sepiapter_red: sepiapterin reductase
    3.9e-05   20.5   0.5    4.8e-05   20.2   0.3    1.1  1  TIGR03466 HpnA: hopanoid-associated sugar epimerase
    0.00025   18.1   0.2    0.00038   17.5   0.2    1.3  1  TIGR01181 dTDP_gluc_dehyt: dTDP-glucose 4,6-dehydratase
     0.0003   17.6   0.3    0.00054   16.7   0.2    1.3  1  TIGR02823 oxido_YhdH: putative quinone oxidoreductase, YhdH/YhfP family
    0.00053   17.4   1.1    0.00091   16.6   0.8    1.4  1  TIGR01289 LPOR: light-dependent protochlorophyllide reductase
     0.0011   16.0   0.5     0.0016   15.4   0.4    1.3  1  TIGR04180 EDH_00030: NAD dependent epimerase/dehydratase, LLPSF_EDH_00030 family
     0.0012   15.9   0.3     0.0018   15.2   0.2    1.3  1  TIGR01214 rmlD: dTDP-4-dehydrorhamnose reductase
     0.0027   14.6   1.3      0.004   14.0   0.3    1.6  2  TIGR02824 quinone_pig3: putative NAD(P)H quinone oxidoreductase, PIG3 family
      0.008   13.1   2.5       0.27    8.1   0.8    2.3  2  TIGR02685 pter_reduc_Leis: pteridine reductase
  ------ inclusion threshold ------
      0.019   11.7   0.1      0.027   11.2   0.0    1.2  1  TIGR03589 PseB: UDP-N-acetylglucosamine 4,6-dehydratase


Domain annotation for each model (and alignments):
>> TIGR01963  PHB_DH: 3-hydroxybutyrate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  113.0   0.8   1.4e-35   2.9e-33       3     190 ..      30     208 ..      29     233 .. 0.92

  Alignments for each domain:
  == domain 1    score: 113.0 bits;  conditional E-value: 1.4e-35
   TIGR01963   3 valvtGaasGiglaiakelaaaGakvvvndleeeaaeaaakeleeaggevlalkadvtkeeeiadlieavaaefgsldiLvnnAGiqhv.apieefptekfekiiavnltsafhtiraalpimkkqgwGriiniasvhglvasafKsaYvaaKHglvGltKvlAlEvAetgitanaicPgyvrtpLvek 190
                 v+l+tGa+sG+g+a+ k +a++G +v+       +a+++a+ + +ag ++  ++ d+++ +++ ++       ++++ +LvnnA + hv ++  e   ++ ++ i++n ++++ +++a+l +m +++ Gri  iasv g  + ++ s Yva+KH++vG+  +lA E+  t++ + +icPg ++tp  +k
  MMETSP1137-20121227|6484_1  30 VMLITGASSGVGAAMVKYYANKGYTVAAIAR---SADKLASVCVDAGERARPFVCDISDRNQVLNM-------VARSSVLVNNAAVGHVgKNFWELSLDDVDTCIDINAKGTMYVTHAVLQGMMAANKGRIFGIASVAGTWGIPTESGYVASKHAMVGFLDSLANETRGTEVVVSTICPGGIDTPFWSK 208
                 689**********************998765...56678899******************976644.......46789***********45689*******************************************************************************************8766 PP

>> TIGR01830  3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  111.9   0.3   4.1e-35   8.5e-33       2     188 ..      32     208 ..      31     239 .. 0.90

  Alignments for each domain:
  == domain 1    score: 111.9 bits;  conditional E-value: 4.1e-35
   TIGR01830   2 lvtGasrgiGkaiakklakegakvviterskeekaeelaeelkeagvkaaavkldvsdeeevkelveeveeelgeidilvnnAGitr.DklllrmkeedwdevikvnLkgvfnvtkavlkkmikkrsGriinissvvgllGnagqanYaasKaGligltkslakElasrnitvnavaPGfietdmtek 188
                 l+tGas g+G+a++k +a++g++v+   r    +a++la+   +ag +a  +++d+sd+++v ++v++        ++lvnnA + +  k + +++ +d d++i++n kg+  vt+avl+ m+ + +Gri  i+sv+g++G +  + Y+asK  ++g+  sla+E+   ++ v +++PG i+t++ +k
  MMETSP1137-20121227|6484_1  32 LITGASSGVGAAMVKYYANKGYTVAAIAR----SADKLASVCVDAGERARPFVCDISDRNQVLNMVAR-------SSVLVNNAAVGHvGKNFWELSLDDVDTCIDINAKGTMYVTHAVLQGMMAANKGRIFGIASVAGTWGIPTESGYVASKHAMVGFLDSLANETRGTEVVVSTICPGGIDTPFWSK 208
                 8************************9955....5677888899999**************99998865.......579*******87357899******************************************************************************************98665 PP

>> TIGR03206  benzo_BadH: 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.7   3.1   2.9e-30   5.9e-28       5     191 ..      30     207 ..      28     224 .. 0.92

  Alignments for each domain:
  == domain 1    score: 95.7 bits;  conditional E-value: 2.9e-30
   TIGR03206   5 vaivtgggggiggaicrrfaeegakvavldlnaeaaekvaaairekggkaeavavditdrasvdaavaaaeealgpvdvlvnnagwdvl.kpflktekaewerliainltgalymhhavlkgmverkagrivniasdaarvgssgeavyaackgglvafsktlarelarhgitvnvvcpgptdtalle 191
                 v+++tg + g+g+a+ + +a++g  va +     +a+k+a+   ++g +a+ + +di+dr+ v   va +        vlvnna    + k+f +    + +  i in +g++y+ havl+gm+  ++gri  ias a+  g   e+ y a k  +v f  +la e    ++ v  +cpg  dt++  
  MMETSP1137-20121227|6484_1  30 VMLITGASSGVGAAMVKYYANKGYTVAAIA---RSADKLASVCVDAGERARPFVCDISDRNQVLNMVARS-------SVLVNNAAVGHVgKNFWELSLDDVDTCIDINAKGTMYVTHAVLQGMMAANKGRIFGIASVAGTWGIPTESGYVASKHAMVGFLDSLANETRGTEVVVSTICPGGIDTPFWS 207
                 578***********************9874...567899999*********************9998864.......69****998655389********************************************************************************************9875 PP

>> TIGR01829  AcAcCoA_reduct: acetoacetyl-CoA reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.1   1.2   1.3e-26   2.6e-24       2     217 ..      30     235 ..      29     244 .. 0.88

  Alignments for each domain:
  == domain 1    score: 84.1 bits;  conditional E-value: 1.3e-26
   TIGR01829   2 valvtGglgGiGtaickrlakdGykvvanvapneerakewlqekevegfdvavvkadvssfeeakaavakveaelGpvdvlvnnaGitr.davfkkmtkeqWeevidtnlnsvfnvtrpviegmlergfGriinissvnGlkGqfGqanysaakaGliGftkalaqegakkgvtvnviaPGyiatemvkavredvlkkivaqiPvkrlgkpeeiaaa 217
                 v l+tG++ G+G+a+ k  a++Gy+v+a  ++ ++ a+ + ++ e      + +  d+s+ ++  ++va+         vlvnna +    + f  ++ ++ +  id+n ++ + vt+ v++gm+  + Gri  i+sv G  G    + y a+k  ++Gf  +la+e+  + v+v +i+PG i+t+  ++ +    +k  a+  +  l +p+ei ++
  MMETSP1137-20121227|6484_1  30 VMLITGASSGVGAAMVKYYANKGYTVAAIARSADKLASVCVDAGERA----RPFVCDISDRNQVLNMVAR-------SSVLVNNAAVGHvGKNFWELSLDDVDTCIDINAKGTMYVTHAVLQGMMAANKGRIFGIASVAGTWGIPTESGYVASKHAMVGFLDSLANETRGTEVVVSTICPGGIDTPFWSKEHPYGADKTHADGTTSMLIQPQEIIDL 235
                 679*************************9998888888888766555....7788999999887777765.......579******9873689********************************************************************************************98877766666777777777777777777665 PP

>> TIGR02415  23BDH: acetoin reductases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.2   0.6   8.2e-26   1.7e-23       2     190 ..      30     208 ..      29     225 .. 0.91

  Alignments for each domain:
  == domain 1    score: 81.2 bits;  conditional E-value: 8.2e-26
   TIGR02415   2 valvtGaaqGiGkaiaerLakdGfavavadlneetaketakelkekgtkavavkldvsdkseveeaveqaveklGeldvlvnnaGvalv.tpileiteeeleklynvnvkgvlfGiqaaaekfkklkhkGkiinaasiagvegspelsaysstkfavrgltqtaakeLakkgitvnayaPGivktemree 190
                 v l+tGa+ G+G a+++  a+ G+ va      ++a + a+   ++g +a  ++ d+sd+++v ++v ++        vlvnna v++v + + e++ +++++  ++n kg+++   a  +      +kG+i   as+ag+ g p+ s y ++k+a+ g+  + a+e     + v + +PG ++t+ +++
  MMETSP1137-20121227|6484_1  30 VMLITGASSGVGAAMVKYYANKGYTVAAIA---RSADKLASVCVDAGERARPFVCDISDRNQVLNMVARS-------SVLVNNAAVGHVgKNFWELSLDDVDTCIDINAKGTMYVTHAVLQ-GMMAANKGRIFGIASVAGTWGIPTESGYVASKHAMVGFLDSLANETRGTEVVVSTICPGGIDTPFWSK 208
                 679**********************98764...567777888899*******************999765.......6********998578**********************7776655.5667899*********************************************************9976 PP

>> TIGR03971  SDR_subfam_1: oxidoreductase, SDR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.3   3.1   9.1e-23   1.9e-20      53     210 ..      62     212 ..      27     247 .. 0.82

  Alignments for each domain:
  == domain 1    score: 71.3 bits;  conditional E-value: 9.1e-23
   TIGR03971  53 ldetaklvealGrkvlarkadvrkleelravveegveefGrldvvvanaGvlsygr.afelseeqWdtvldvnlkGvWktvkavvPalierknGGsiiivssvaglkalpglahyaaakhGlvgltktlanelaeygirvnsihPtsvdtamiepeamr 210
                  d+ a++   +G ++  +++d+ + +++ +       ++ r  v+v+na v  +g+  +els ++ dt +d+n kG+  + +av+  ++ ++  G i  ++svag  ++p+++ y a+kh +vg+ ++lane    ++ v +i P ++dt+  ++e  +
  MMETSP1137-20121227|6484_1  62 ADKLASVCVDAGERARPFVCDISDRNQVLN-------MVARSSVLVNNAAVGHVGKnFWELSLDDVDTCIDINAKGTMYVTHAVLQGMMAAN-KGRIFGIASVAGTWGIPTESGYVASKHAMVGFLDSLANETRGTEVVVSTICPGGIDTPFWSKEHPY 212
                 455566666677777777777777666655.......556779***********97369*****************************9887.789*******************************************************98877655 PP

>> TIGR01832  kduD: 2-deoxy-D-gluconate 3-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.6   0.4   3.7e-23   7.5e-21       7     188 ..      30     203 ..      28     218 .. 0.89

  Alignments for each domain:
  == domain 1    score: 72.6 bits;  conditional E-value: 3.7e-23
   TIGR01832   7 valvtGantGlGqgiavglaeaGadivgvgiselsetqekvealGrkflslkadladeeaakalvdeaveeagkidilvnnaGiirr.edavefsekdwddvlnvnlkavfllsqavakkllkqGrkgkiiniasllsfqGGirvpsytasksavaGltkllanewakkginvnaiaPGylet 188
                 v+l+tGa++G+G +++   a+ G  + ++++s+ + + +   + G+++  +  d++d +++ ++v+       +  +lvnna + +  ++  e+s  d d  +++n k  +++++av + +++   kg+i  ias+    G    + y ask+a++G+  +lane   +++ v +i PG ++t
  MMETSP1137-20121227|6484_1  30 VMLITGASSGVGAAMVKYYANKGYTVAAIARSADKLA-SVCVDAGERARPFVCDISDRNQVLNMVA-------RSSVLVNNAAVGHVgKNFWELSLDDVDTCIDINAKGTMYVTHAVLQGMMAAN-KGRIFGIASVAGTWGIPTESGYVASKHAMVGFLDSLANETRGTEVVVSTICPGGIDT 203
                 579*************************999876655.55556799**********9987765544.......3469*******98625678***************************999986.9*********99877667788********************************9998 PP

>> TIGR01831  fabG_rel: putative 3-oxoacyl-(acyl-carrier-protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.5   0.6   3.9e-20   8.1e-18       2     232 ..      32     252 ..      31     257 .. 0.83

  Alignments for each domain:
  == domain 1    score: 62.5 bits;  conditional E-value: 3.9e-20
   TIGR01831   2 lvtgasrgigraialklaadgfeiavhyrsdradaeesvaairaqggnarllkfdvadrvavrevleadiaehgayygvvlnagiar.daafpalseedwdavietnldgfynvihplvmpmirarkggriitlasvsgvmgnrgqvnysaakagligatkalavelakrkitvnciapglidtemvaeve.kdlkealklvpmkrvgkaeevaalaaflmsddaayvtrqvi 232
                 l+tgas g+g a+    a +g+ +a   rs    a++ ++  +  g  ar +  d++dr +v +++            +v na +    + f  ls +d d+ i+ n  g   v h ++  m+ a k gri  +asv+g  g   +  y a+k  ++g   +la e     + v  i pg idt + ++++    +++        + +++e+  l+ + +   a+ v ++vi
  MMETSP1137-20121227|6484_1  32 LITGASSGVGAAMVKYYANKGYTVAAIARS----ADKLASVCVDAGERARPFVCDISDRNQVLNMVARS----S---VLVNNAAVGHvGKNFWELSLDDVDTCIDINAKGTMYVTHAVLQGMMAANK-GRIFGIASVAGTWGIPTESGYVASKHAMVGFLDSLANETRGTEVVVSTICPGGIDTPFWSKEHpYGADKTHADGTTSMLIQPQEIIDLMDWQLGLPANRVMKRVI 252
                 99**********************998776....66777777888***************997765432....2...35666666542578*******************************99877.6*******************************************************9987654133344443444555678888888888888777777777776 PP

>> TIGR03325  BphB_TodD: cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.9   1.3   2.3e-19   4.7e-17       7     189 ..      30     203 ..      26     214 .. 0.89

  Alignments for each domain:
  == domain 1    score: 59.9 bits;  conditional E-value: 2.3e-19
   TIGR03325   7 vvlvtggasglgralvdrfvaegarvavldksaagleeleaahgdkvvgvegdvrllddhkeavarcveafgkldtlipnagiwdystalvdipddrideafdevfeinvkgyllavkaalpalvasrgsviftv.snagfypngggalytaakhavvglvkelayel.apyvrvngvapgglst 189
                 v+l+tg +sg+g a+v+ +  +g  va + +sa++l  +  + g++    + d+     +++ v    +   +  +l++na +     ++ ++  d +d ++    +in kg ++  +a+l  ++a++ + if + s ag +     + y a+kha+vg++  la e  +  v v  + pgg+ t
  MMETSP1137-20121227|6484_1  30 VMLITGASSGVGAAMVKYYANKGYTVAAIARSADKLASVCVDAGERARPFVCDIS----DRNQVL---NMVARSSVLVNNAAVGHVGKNFWELSLDDVDTCI----DINAKGTMYVTHAVLQGMMAANKGRIFGIaSVAGTWGIPTESGYVASKHAMVGFLDSLANETrGTEVVVSTICPGGIDT 203
                 89********************************************999999984....344444...444566899****************999988776....5**************999999888888874789****999********************974789**********987 PP

>> TIGR02632  RhaD_aldol-ADH: rhamnulose-1-phosphate aldolase/alcohol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.6   0.6   2.3e-13   4.6e-11     416     599 ..      30     201 ..      18     210 .. 0.92

  Alignments for each domain:
  == domain 1    score: 39.6 bits;  conditional E-value: 2.3e-13
   TIGR02632 416 valvtGgasGiGrevarrlvdeGahvvladldaeaaeavaaelvdkfGadkavalkldvtdeeavkaafaevalayGGvdivvnnaGi.avskpleeteleeWdlnldilatGyflvareaarllrkqglggnlvfiasknavvakknalaysaakaaeahlvrllaielaelgirvntvaPdav 599
                 v+l+tG++sG+G ++ + ++++G  v  +   a+++++v  +       ++a+  + d+ d+++v +++a  +       ++vnna +  v k++ e +l++ d  +di+a+G   v++   + + +    g +  ias+ +    +  + y a+k a +  +  la e   + + v t+ P ++
  MMETSP1137-20121227|6484_1  30 VMLITGASSGVGAAMVKYYANKGYTVAAIARSADKLASVCVDAG-----ERARPFVCDISDRNQVLNMVARSS-------VLVNNAAVgHVGKNFWELSLDDVDTCIDINAKGTMYVTHAVLQGMMAA-NKGRIFGIASVAGTWGIPTESGYVASKHAMVGFLDSLANETRGTEVVVSTICPGGI 201
                 899**************************999999999999887.....899*************99999876.......5788888846899************************99888888765.568999***********************************9999******99875 PP

>> TIGR01500  sepiapter_red: sepiapterin reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.2   0.0     5e-09     1e-06       2     200 ..      30     205 ..      29     221 .. 0.82

  Alignments for each domain:
  == domain 1    score: 26.2 bits;  conditional E-value: 5e-09
   TIGR01500   2 lllvtGasrGfGrelaqelakrlkaegsvlvLlaRndeaLkeskaeieaevsalsvdlvsldleaakdvedllkaleesikkeeyerillinnaGtlgdvskrekelsDsknvqkyydsnvtslvvltsellkklkelqglektvvnlssLcaikpfkswalYCaskaaRdmffqvLaleek.edvkvLnYapGvlDtdm 200
                 ++l+tGas G+G ++    +k   ++g ++  +aR+ + L +   +      + +      d++  +   ++l+++             ++ n+ ++g+v+k + els  + v+   d n    + +t  +l+ +    + +  +  ++s++    +++ + Y ask a   f   La e +  +v v    pG +Dt  
  MMETSP1137-20121227|6484_1  30 VMLITGASSGVGAAM----VKYYANKGYTVAAIARSADKLASVCVDA-----GERARPFVCDISDRN---QVLNMVAR---------SSVLVNNAAVGHVGKNFWELS-LDDVDTCIDINAKGTMYVTHAVLQGMM--AANKGRIFGIASVAGTWGIPTESGYVASKHAMVGFLDSLANETRgTEVVVSTICPGGIDTPF 205
                 679999999999876....5556669999999999999998765443.....445556666776655...55555543.........334445568***********9.789*********************999..5666789*************************************99**************75 PP

>> TIGR03466  HpnA: hopanoid-associated sugar epimerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   0.3   2.4e-07   4.8e-05       3     102 ..      31     140 ..      29     179 .. 0.73

  Alignments for each domain:
  == domain 1    score: 20.2 bits;  conditional E-value: 2.4e-07
   TIGR03466   3 vlvtGatGFvGsavvrllleeGeevrvlvrktsdrrnleeldvEi...veGdlkdeaslkkalkGcealfHvAA......d.yrlwakdpeelykanvegtravleaAle 102
                  l+tGa+  vG+a+v+  +++G++v +++r++ + + +     E    ++ d++d++++ + ++  ++l+  AA      + ++l   d ++ +++n +gt  v +a l+
  MMETSP1137-20121227|6484_1  31 MLITGASSGVGAAMVKYYANKGYTVAAIARSADKLASVCVDAGERarpFVCDISDRNQVLNMVARSSVLVNNAAvghvgkNfWELSLDDVDTCIDINAKGTMYVTHAVLQ 140
                 69*****************************99998875544444112789******999999999888877773322112234556789999999*9998776655443 PP

>> TIGR01181  dTDP_gluc_dehyt: dTDP-glucose 4,6-dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.2   1.9e-06   0.00038       2     114 ..      31     141 ..      30     157 .. 0.82

  Alignments for each domain:
  == domain 1    score: 17.5 bits;  conditional E-value: 1.9e-06
   TIGR01181   2 lLvtGGaGfiGsnfvryileetpdaevvvlDkLtyagnkenlkdledeerysfvkgdiadrelverllkeedvdavvnfaaeshvDr.....sisepeafietnvvGtytlleavrke 114
                 +L+tG +  +G+++v+y+ ++        + +++ ++ k +   ++  er +    di+dr++v +++++++  ++vn aa  hv +     s+++  + i+ n  Gt+ +  av + 
  MMETSP1137-20121227|6484_1  31 MLITGASSGVGAAMVKYYANKGY-----TVAAIARSADKLASVCVDAGERARPFVCDISDRNQVLNMVARSS--VLVNNAAVGHVGKnfwelSLDDVDTCIDINAKGTMYVTHAVLQG 141
                 79****************99773.....234455555555555677888999999**************888..9**********87555558999999*********9999998765 PP

>> TIGR02823  oxido_YhdH: putative quinone oxidoreductase, YhdH/YhfP family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.2   2.6e-06   0.00054     141     180 ..      23      62 ..      11      73 .. 0.80

  Alignments for each domain:
  == domain 1    score: 16.7 bits;  conditional E-value: 2.6e-06
   TIGR02823 141 gltpeegevlVtGAtGgVgslavalLsklGyevvavtgkk 180
                    p+ g +l+tGA+ gVg+  v+  ++ Gy+v+a+   +
  MMETSP1137-20121227|6484_1  23 PEMPDLGVMLITGASSGVGAAMVKYYANKGYTVAAIARSA 62 
                 36789999*************************9976554 PP

>> TIGR01289  LPOR: light-dependent protochlorophyllide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.8   4.5e-06   0.00091       6     145 ..      31     157 ..      27     195 .. 0.77

  Alignments for each domain:
  == domain 1    score: 16.6 bits;  conditional E-value: 4.5e-06
   TIGR01289   6 viitgassglglaaakalvekgkwhvvmacrdlekaekaakslglpkdsytilkldlasldsvrkfveqfresgrsldalvcnaavylpllkeplfsadgyelsvatnhlghfllsnllledlkksdekdkrliilgsvt 145
                 ++itgassg+g a  k  ++kg + v    r  +k  ++  ++g  +  +     d++  + v ++v++         +lv naav     +    s d+ +  +  n  g + +++ +l+ + ++++   r+  + sv+
  MMETSP1137-20121227|6484_1  31 MLITGASSGVGAAMVKYYANKG-YTVAAIARSADKLASVCVDAGERARPFV---CDISDRNQVLNMVAR-------SSVLVNNAAVGHVGKNFWELSLDDVDTCIDINAKGTMYVTHAVLQGMMAANK--GRIFGIASVA 157
                 68********************.9999999******999999998877764...688887777777753.......3688999999888888888888888888888888888888888888776543..4555555554 PP

>> TIGR04180  EDH_00030: NAD dependent epimerase/dehydratase, LLPSF_EDH_00030 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.4   7.7e-06    0.0016       1     110 [.      31     140 ..      31     195 .. 0.80

  Alignments for each domain:
  == domain 1    score: 15.4 bits;  conditional E-value: 7.7e-06
   TIGR04180   1 vlvtGadGfiGshlvealvekGaevralvlynsfnswGwldevekevkkeievvlGdirdaesvkkavkgvdvvfhlaaliaiP..y...syvapesyvetnvkGtlnvlqaard 110
                 +l+tGa   +G+ +v    +kG++v a+++         l +v+ ++ ++   ++ di d ++v ++v    v++  aa+  +   +   s    ++ ++ n kGt+ v +a  +
  MMETSP1137-20121227|6484_1  31 MLITGASSGVGAAMVKYYANKGYTVAAIARSA-----DKLASVCVDAGERARPFVCDISDRNQVLNMVARSSVLVNNAAVGHVGknFwelSLDDVDTCIDINAKGTMYVTHAVLQ 140
                 59**************************9744.....347788888899999************************9998655411433366778899*********99988754 PP

>> TIGR01214  rmlD: dTDP-4-dehydrorhamnose reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.2   8.8e-06    0.0018       2      87 ..      31     137 ..      30     144 .. 0.87

  Alignments for each domain:
  == domain 1    score: 15.2 bits;  conditional E-value: 8.8e-06
   TIGR01214   2 ilitGakgqlgreLveqlskegsevvaltrs..................qldledpealeellreikPdvvvntaAytdVDka..Es...eaekayavNalatenlAra 87 
                 +litGa++ +g ++v+  +++g +v a+ rs                   +d++d +++ +++      v+vn aA  +V k   E+   + ++   +Na++t+ + +a
  MMETSP1137-20121227|6484_1  31 MLITGASSGVGAAMVKYYANKGYTVAAIARSadklasvcvdagerarpfVCDISDRNQVLNMVAR--SSVLVNNAAVGHVGKNfwELsldDVDTCIDINAKGTMYVTHA 137
                 69*************************99999****************99************988..46***********88533431225677888999999888765 PP

>> TIGR02824  quinone_pig3: putative NAD(P)H quinone oxidoreductase, PIG3 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.3     2e-05     0.004     142     182 ..      30      71 ..      20      79 .. 0.89
   2 ?   -2.2   0.0       1.7   3.4e+02     209     242 ..     120     158 ..      93     161 .. 0.66

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 2e-05
   TIGR02824 142 tvLihggasGiGttaiqlakalgakvlvtagsdekle.aaek 182
                  +Li g++sG+G++ ++   + g++v++ a+s++kl+ ++ +
  MMETSP1137-20121227|6484_1  30 VMLITGASSGVGAAMVKYYANKGYTVAAIARSADKLAsVCVD 71 
                 58*********************************9866665 PP

  == domain 2    score: -2.2 bits;  conditional E-value: 1.7
   TIGR02824 209 vdvilDi..vggsyleknl...kalakdGrlvliallgg 242
                 vd  +Di   g+ y+++ +    ++a++Gr+  ia + g
  MMETSP1137-20121227|6484_1 120 VDTCIDInaKGTMYVTHAVlqgMMAANKGRIFGIASVAG 158
                 455555421356666665522246788888888888777 PP

>> TIGR02685  pter_reduc_Leis: pteridine reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.1   0.8    0.0013      0.27       3      76 ..      30     101 ..      28     111 .. 0.76
   2 ?    4.1   0.0     0.022       4.5     171     204 ..     166     199 ..     124     205 .. 0.89

  Alignments for each domain:
  == domain 1    score: 8.1 bits;  conditional E-value: 0.0013
   TIGR02685   3 aalvtGaakriGrsiavklhqeGyrvvlhyrrsaeaasslaaelnaeransavvvkadlsnsasllssceeiid 76 
                 + l+tGa+  +G ++ +   ++Gy+v    r +++ as  ++  +++r+   v   +d  ++  ++++ + +++
  MMETSP1137-20121227|6484_1  30 VMLITGASSGVGAAMVKYYANKGYTVAAIARSADKLASVCVDAGERARP--FVCDISDRNQVLNMVARSSVLVN 101
                 679***********************99999888889888887766665..34444566666666666666665 PP

  == domain 2    score: 4.1 bits;  conditional E-value: 0.022
   TIGR02685 171 slytmakealeGltrsaalelaslqirvngvapG 204
                 s y  +k+a++G+  s a e    ++ v +++pG
  MMETSP1137-20121227|6484_1 166 SGYVASKHAMVGFLDSLANETRGTEVVVSTICPG 199
                 568999***************************8 PP

>> TIGR03589  PseB: UDP-N-acetylglucosamine 4,6-dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   0.00013     0.027       7     114 ..      31     140 ..      25     146 .. 0.81

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 0.00013
   TIGR03589   7 ilitGgtGsfGkkfikkllekykvkkiiiysrdelkqfelqqkfeedklrffiGdvrdkerleraledvdlvvhaaalkqvpaaey.....nPleciktnieGaenvidaald 114
                 +litG++   G +++k   +k  +   i  s d l  + ++     ++ r f+ d+ d++++ + +    ++v  aa+ +v    +     +   ci  n +G++ v +a l+
  MMETSP1137-20121227|6484_1  31 MLITGASSGVGAAMVKYYANKGYTVAAIARSADKLASVCVDA---GERARPFVCDISDRNQVLNMVARSSVLVNNAAVGHVGKNFWelsldDVDTCIDINAKGTMYVTHAVLQ 140
                 799***999***999999998877788888999888776653...5899*******************************987644111113446999999999999999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (259 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       197  (0.0480254); expected 82.0 (0.02)
Passed bias filter:                      152  (0.0370551); expected 82.0 (0.02)
Passed Vit filter:                        36  (0.00877621); expected 4.1 (0.001)
Passed Fwd filter:                        20  (0.00487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              20  [number of targets reported over threshold]
# CPU time: 0.39u 0.14s 00:00:00.53 Elapsed: 00:00:00.53
# Mc/sec: 645.00
//
Query:       MMETSP1137-20121227|6485_1  [L=75]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (75 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        83  (0.020234); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.28
# Mc/sec: 341.35
//
Query:       MMETSP1137-20121227|6486_1  [L=99]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (99 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        52  (0.0126767); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.15s 00:00:00.29 Elapsed: 00:00:00.73
# Mc/sec: 179.00
//
Query:       MMETSP1137-20121227|6487_1  [L=298]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (298 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       130  (0.0316919); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.13s 00:00:00.40 Elapsed: 00:00:00.52
# Mc/sec: 756.40
//
Query:       MMETSP1137-20121227|6488_1  [L=135]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (135 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        63  (0.0153584); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.18s 00:00:00.35 Elapsed: 00:00:00.31
# Mc/sec: 574.79
//
Query:       MMETSP1137-20121227|6489_1  [L=308]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (308 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        91  (0.0221843); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.18s 00:00:00.42 Elapsed: 00:00:00.56
# Mc/sec: 725.94
//
Query:       MMETSP1137-20121227|6490_1  [L=280]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.3e-22   78.0   7.0    1.8e-22   77.6   4.8    1.0  1  TIGR00400 mgtE: magnesium transporter


Domain annotation for each model (and alignments):
>> TIGR00400  mgtE: magnesium transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.6   4.8   4.3e-26   1.8e-22     271     447 ..      79     256 ..      69     258 .. 0.90

  Alignments for each domain:
  == domain 1    score: 77.6 bits;  conditional E-value: 4.3e-26
   TIGR00400 271 syldtsllvvakkrvvWLlvLlvsstltasiissyedvlkkvvaLaafiPllidasGnaGaqssavvirgLakeevkvkdvlkvilreirvsilvGavlavvvavvavflqg..dllvafvvassLfvsllvaklaGgllPivlkklkldPalmsgPlittladvlslliylniakall 447
                  y+d  ++    kr +WLl L++++ +++ +++s+e+++++ ++L+af+ +l + +Gn   q+ a +++ L ++e+   ++ +v+ re+ ++i++ a+la+ v+ ++ +l      l a+ +  s ++++++a+ +G l  + l +  ++  + + P++  ++dvl++ +  +++ a+l
  MMETSP1137-20121227|6490_1  79 PYFDVPVMESVMKRFPWLLSLMLVQSVSGFVVESFEELIQQHIILSAFLTMLAGGGGNSSGQTIAELVKRLGRGELSSSQMCRVLGREVFIGIVLAALLAIAVFFRVRLLSHdaTNLDALAIMVSYVLIIIMANAVGVLTVMALSRCNVE-RVGAPPVVQVVVDVLGITLTCLVSVAIL 256
                 59******************************************************************************************************9998887732445677777778888899999999999999999998.58999***********998877777666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (280 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       225  (0.0548513); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.25u 0.16s 00:00:00.41 Elapsed: 00:00:00.33
# Mc/sec: 1119.91
//
Query:       MMETSP1137-20121227|6491_1  [L=227]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (227 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        72  (0.0175524); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.11s 00:00:00.32 Elapsed: 00:00:00.35
# Mc/sec: 856.04
//
Query:       MMETSP1137-20121227|6492_1  [L=62]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (62 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        52  (0.0126767); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.19s 00:00:00.31 Elapsed: 00:00:00.28
# Mc/sec: 292.26
//
Query:       MMETSP1137-20121227|6493_1  [L=289]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (289 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       103  (0.0251097); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.13s 00:00:00.37 Elapsed: 00:00:00.54
# Mc/sec: 706.39
//
Query:       MMETSP1137-20121227|6494_1  [L=87]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.1e-20   70.1   1.1    4.6e-20   70.0   0.8    1.1  1  TIGR00494 crcB: protein CrcB


Domain annotation for each model (and alignments):
>> TIGR00494  crcB: protein CrcB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.0   0.8   1.1e-23   4.6e-20       6      95 ..       3      85 ..       1      87 [] 0.86

  Alignments for each domain:
  == domain 1    score: 70.0 bits;  conditional E-value: 1.1e-23
   TIGR00494  6 GgalGallRyllskvlsallkgeslPlgtltvnliGalilGllaylsqlavisadlklliatGflGalttFstfslevlkLlqegrlkea 95
                G+  Ga+ R+ +s++ +    g     ++ ++n++G+l lG+   l+ +++  ++++ll++tGf+Ga+ttFstfs++++kLlq+ ++ +a
  MMETSP1137-20121227|6494_1  3 GACGGAVSRFGISEFAKHRGYG---AEAICAINIVGSLALGV---LAGTQP-ATKYQLLLGTGFCGAFTTFSTFSVDTMKLLQQDKYARA 85
                8999**********77555555...789**************...444444.579*******************************9887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (87 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        78  (0.0190151); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.30
# Mc/sec: 382.77
//
Query:       MMETSP1137-20121227|6495_1  [L=274]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (274 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        70  (0.0170648); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.15s 00:00:00.37 Elapsed: 00:00:00.34
# Mc/sec: 1063.68
//
Query:       MMETSP1137-20121227|6496_1  [L=334]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (334 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        72  (0.0175524); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.16s 00:00:00.40 Elapsed: 00:00:00.42
# Mc/sec: 1049.63
//
Query:       MMETSP1137-20121227|6497_1  [L=177]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (177 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        42  (0.0102389); expected 82.0 (0.02)
Passed bias filter:                       36  (0.00877621); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.16s 00:00:00.35 Elapsed: 00:00:00.33
# Mc/sec: 707.94
//
Query:       MMETSP1137-20121227|6498_1  [L=180]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        1.7    3.9  10.6        2.2    3.6   7.4    1.0  1  TIGR00927 2A1904: K+-dependent Na+/Ca+ exchanger


Domain annotation for each model (and alignments):
>> TIGR00927  2A1904: K+-dependent Na+/Ca+ exchanger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   7.4   0.00053       2.2     321     435 ..      14     130 ..       9     141 .. 0.76

  Alignments for each domain:
  == domain 1    score: 3.6 bits;  conditional E-value: 0.00053
   TIGR00927 321 segqvtisirtgsspaetkastaawkvrnplsrtsa....pavriasatvrglvkkpstapstsatprvrakltiqvhhcvvvkpap.vvsttpspslttallpeapspspsvlpsglpd 435
                  e++ ++   ++s pa tk+st  +   n ++ t+     + + +  a v  +++ p t+ s +a pr  +++  q  +    k  p +   + sp++++a+ p +p +     ps++p 
  MMETSP1137-20121227|6498_1  14 KEERASAHAAVRSRPAATKSSTRPKVTSNYMPPTTLtqmlSKLGTPDARVSAMQRVPYTSSSKTAEPRGASSI--QTARDFCPKKFPdTLRSSASPAWSAAVTPCHPQN-IKQRPSTQPS 130
                 57888899999**************9999888776511124567888999999999*9999999999876655..5555555566651445678********9998877.3556666664 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (180 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        53  (0.0129205); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.18u 0.17s 00:00:00.35 Elapsed: 00:00:00.30
# Mc/sec: 791.93
//
Query:       MMETSP1137-20121227|6499_1  [L=137]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (137 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        82  (0.0199902); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.19s 00:00:00.35 Elapsed: 00:00:00.27
# Mc/sec: 669.72
//
Query:       MMETSP1137-20121227|6501_1  [L=483]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (483 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        72  (0.0175524); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.16s 00:00:00.50 Elapsed: 00:00:00.34
# Mc/sec: 1875.02
//
Query:       MMETSP1137-20121227|6502_1  [L=478]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (478 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        67  (0.0163335); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.16s 00:00:00.48 Elapsed: 00:00:00.34
# Mc/sec: 1855.61
//
Query:       MMETSP1137-20121227|6503_1  [L=224]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (224 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        99  (0.0241346); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.16s 00:00:00.39 Elapsed: 00:00:00.30
# Mc/sec: 985.52
//
Query:       MMETSP1137-20121227|6504_1  [L=205]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (205 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       162  (0.0394929); expected 82.0 (0.02)
Passed bias filter:                       96  (0.0234032); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.16s 00:00:00.36 Elapsed: 00:00:00.44
# Mc/sec: 614.95
//
Query:       MMETSP1137-20121227|6505_1  [L=95]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (95 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        49  (0.0119454); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.15s 00:00:00.27 Elapsed: 00:00:00.27
# Mc/sec: 464.41
//
Query:       MMETSP1137-20121227|6506_1  [L=171]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (171 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        54  (0.0131643); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.13s 00:00:00.30 Elapsed: 00:00:00.30
# Mc/sec: 752.34
//
Query:       MMETSP1137-20121227|6507_1  [L=618]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.7e-21   73.0   0.0    4.1e-21   72.4   0.0    1.2  1  TIGR03903 TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
    1.1e-05   22.9   0.1    1.7e-05   22.2   0.1    1.2  1  TIGR03724 arch_bud32: Kae1-associated kinase Bud32


Domain annotation for each model (and alignments):
>> TIGR03903  TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.4   0.0     2e-24   4.1e-21      28     233 ..      53     251 ..      40     308 .. 0.81

  Alignments for each domain:
  == domain 1    score: 72.4 bits;  conditional E-value: 2e-24
   TIGR03903  28 eialCarLshPnivaLlDsGeaedgllFavFeyveGrtlrevL...aadGaLpaaetg.rLmlqvLDalaaahdaGvvhRDLkPqnimvsaadveshakvLDFGigaLlpgvedadeatltrttevlGsPaYaaPeqLRgepvtaksDlYaWGLivle.CLtGkrvvqGasvaevlykqLsPvdvslPsaiaghpLgevLRkalnkdvrqR 233
                 e+ + a L+   i +  Ds   e++ l+ v ey     l +vL   + +G   +++t+ r +lq L +l   h++ vvhRD+kP+ni +  +d   + k+ DFG++ Ll+++++        +t v+GsP Y  Pe   gep   k+D+++ G+ + e CL  ++  +  s a ++ k +  ++  lP+   +  L+  L +   + +  R
  MMETSP1137-20121227|6507_1  53 ETHILASLENGFITRYYDSF-IENNCLYMVMEYASNGSLHDVLcqrQKKGNHLSEDTVwRYILQLLIGLHEIHARNVVHRDIKPHNIFLGEND---TVKIGDFGVSRLLSNARE-------MATTVVGSPGYLPPELCNGEPYNEKADIWSLGVTLAElCLLKHPYGDATSQAALILKIMEAKPPRLPELY-SAELSRTLASCFSRVPARR 251
                 77788888888888888885.5666*****************9555567876666665499***************************97766...679***************.......56779******************************999*****999999999999999999999999754.5566666666665554444 PP

>> TIGR03724  arch_bud32: Kae1-associated kinase Bud32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.2   0.1   8.1e-09   1.7e-05      67     148 ..      73     166 ..      51     169 .. 0.78

  Alignments for each domain:
  == domain 1    score: 22.2 bits;  conditional E-value: 8.1e-09
   TIGR03724  67 vdpeekkivmeyiegkklkdlleekel...........ellkevGelvgklHkagivhgDlttsNiiv.kddklyliDfGLgkkskevedkavD 148
                 ++++   +vmey ++  l+d+l ++++           +++ ++   + ++H  ++vh D+ ++Ni + ++d++ + DfG ++  ++++++a+ 
  MMETSP1137-20121227|6507_1  73 IENNCLYMVMEYASNGSLHDVLCQRQKkgnhlsedtvwRYILQLLIGLHEIHARNVVHRDIKPHNIFLgENDTVKIGDFGVSRLLSNAREMATT 166
                 55666778999999999999998877778888888555555555566778999***************446666677******99999999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (618 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        63  (0.0153584); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.18s 00:00:00.59 Elapsed: 00:00:00.54
# Mc/sec: 1510.54
//
Query:       MMETSP1137-20121227|6508_1  [L=84]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (84 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        29  (0.00706972); expected 82.0 (0.02)
Passed bias filter:                       29  (0.00706972); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.25
# Mc/sec: 443.48
//
Query:       MMETSP1137-20121227|6509_1  [L=413]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0015   15.1   0.1      0.002   14.7   0.0    1.2  1  TIGR03492 TIGR03492: conserved hypothetical protein


Domain annotation for each model (and alignments):
>> TIGR03492  TIGR03492: conserved hypothetical protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0     5e-07     0.002     147     265 ..      49     169 ..      28     202 .. 0.82

  Alignments for each domain:
  == domain 1    score: 14.7 bits;  conditional E-value: 5e-07
   TIGR03492 147 lylpwerellksrrckavfvRDalta.edLkrqgvkalalGnpmmDglepkekkpl..lkevlriaLLpGsRlpeaernlkllleavealekseavvflaaiasslslekleelleeqgwql 265
                 + + w ++ +++r++ +v+++  +    + +rq+  ++++   ++Dg e++ +  +  l+  +r++L +G R+pe++r+++ +  a+ al+  ++++  +a ++sl l   e++ e+q w  
  MMETSP1137-20121227|6509_1  49 VLQVWREAGMSQRQASTVWAKRPAGRlPTAERQQALVSWMQAHVLDGAEEPARLTFltLSGAPRLLLRAGRRFPELQRSFEAVRAALGALSP-KQLAYSVAHSPSLLLLPPESVHETQRWLR 169
                 5566777777777777777655544404455666689999999*********9555568999*************************99998.8999999****999999999999999865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (413 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        91  (0.0221843); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.32u 0.13s 00:00:00.45 Elapsed: 00:00:00.62
# Mc/sec: 879.22
//
Query:       MMETSP1137-20121227|6510_1  [L=597]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   1.3e-243  806.8   1.6   1.5e-243  806.6   1.1    1.0  1  TIGR02345 chap_CCT_eta: T-complex protein 1, eta subunit
   4.5e-138  459.1   1.4   5.4e-138  458.8   1.0    1.0  1  TIGR02339 thermosome_arch: thermosome, various subunits, archaeal
   3.2e-121  403.2   1.2   4.2e-121  402.8   0.8    1.0  1  TIGR02344 chap_CCT_gamma: T-complex protein 1, gamma subunit
     1e-120  401.8   1.0   1.3e-120  401.5   0.7    1.0  1  TIGR02340 chap_CCT_alpha: T-complex protein 1, alpha subunit
   6.5e-111  369.2   1.1   8.6e-111  368.8   0.7    1.0  1  TIGR02342 chap_CCT_delta: T-complex protein 1, delta subunit
     2e-103  344.6   4.1   2.4e-103  344.3   2.8    1.0  1  TIGR02341 chap_CCT_beta: T-complex protein 1, beta subunit
   3.4e-101  337.3   1.5   4.3e-101  337.0   1.1    1.0  1  TIGR02343 chap_CCT_epsi: T-complex protein 1, epsilon subunit
      6e-88  293.4   0.1    7.3e-88  293.1   0.1    1.0  1  TIGR02346 chap_CCT_theta: T-complex protein 1, theta subunit
    8.4e-84  279.8   0.7    1.1e-83  279.4   0.5    1.1  1  TIGR02347 chap_CCT_zeta: T-complex protein 1, zeta subunit
    4.1e-23   79.5   2.8    1.6e-12   44.5   0.3    2.1  2  TIGR02348 GroEL: chaperonin GroL


Domain annotation for each model (and alignments):
>> TIGR02345  chap_CCT_eta: T-complex protein 1, eta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  806.6   1.1  3.7e-246  1.5e-243       1     522 [.      12     533 ..      12     534 .. 0.99

  Alignments for each domain:
  == domain 1    score: 806.6 bits;  conditional E-value: 3.7e-246
   TIGR02345   1 rptivllkegtdtsqGkgqlisninacvaiaeilkttlGPrGmdklivskek.avvsndGatilklldivhPaakllvdiaksqdsevGdGttsvvvlagellkeakplieeglhpqliiralrealklaieklkeiavelde.eksekrevleklaatalsskliaeekeffskmvvdavlsldkddldkkliGvkkvkGGaledsvlvkGvafkktfsyaGfeqqPkkfanPkilllnvelelkaekdnaeirvedvedykeivdaewkiileklekivesGanvvlsklsiGdlatqyfadrdifcaGrvsdedlkrvvkatGasilsavsdleadvlGkcalfeekqiGserynlftggekakactlilrGgaeqfleeaerslhdaimivrralkakkivaGGGaielelskllrekskkidgkqqliieavakaleviPrslaenaGfdsieilnklrkkhakkgekwaGvdieteeildaleafvwePllvkknalkaateaaatilsvdetikakk 522
                 +p+ivll+egtdtsqGk qlisninac+ai+++++ttlGPrGmdkli++++   ++sndGat++k+l+ivhPa+k+lvdi+ sqd+evGdGttsvv+lage+l+e+kp+ieeg+hpq+i++a+rea kla+ +l+e++v+ld  + ++ re+lek a t+lsskl++ +k+ff+kmvvdavl +  +  + ++iG+kkv GG+l ds+lv+GvafkktfsyaGfeq  k f nPki+llnvelelkae+dnae+rv dv  y+++vdaew+ii++kl kiv+sGa +vls+l+iGdlatqyfadr +fcaGrv ++dlkrv+katGa ++++ +dl+ad +G c+lfee+q+G er+n+f+g++ a + t+ilrGgaeqf+eeaerslhdaim  rr l + ++vaGGGaie+e+s++lre+s+ i gk+ql+i a+akaleviPr++a+naG+d +++lnklr kha+ g++w+Gvd+ ++ i d++e+fvwe +++k+nal aa+eaa++ilsvdet++++ 
  MMETSP1137-20121227|6510_1  12 QPQIVLLREGTDTSQGKPQLISNINACQAIVDVVRTTLGPRGMDKLIHDDNGrVTISNDGATLMKQLQIVHPAGKTLVDISMSQDAEVGDGTTSVVLLAGEFLRECKPYIEEGVHPQVIVKAFREACKLALGRLDELEVKLDMqTPEKLREMLEKSAGTSLSSKLVSGQKAFFAKMVVDAVLGIG-KTGNLDMIGMKKVPGGSLIDSMLVEGVAFKKTFSYAGFEQMTKYFDNPKIVLLNVELELKAERDNAEVRVADVAAYQRVVDAEWDIIYDKLAKIVASGASIVLSRLAIGDLATQYFADRGLFCAGRVAEDDLKRVAKATGAVLQTSCNDLSADIMGSCGLFEERQVGGERFNFFKGCKCADTNTIILRGGAEQFIEEAERSLHDAIMNTRRLLVNPSVVAGGGAIEMEISAFLRERSRGIYGKTQLLIAAYAKALEVIPRQVASNAGMDPTDVLNKLRMKHAH-GGTWFGVDVVENGICDTFESFVWEATVMKRNALAAASEAACLILSVDETVRNPA 533
                 589**********************************************99989****************************************************************************************9567888**********************************99.778889*************************************************************************************************************************************************************************************************************************************************************************************.***************************************************986 PP

>> TIGR02339  thermosome_arch: thermosome, various subunits, archaeal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  458.8   1.0  1.3e-140  5.4e-138       2     519 ..      15     530 ..      14     532 .. 0.97

  Alignments for each domain:
  == domain 1    score: 458.8 bits;  conditional E-value: 1.3e-140
   TIGR02339   2 vlilkegtqrtkgrdalksniaaakavaeavkstlGPrGlDkmLvdslGdvtitnDGatilkemdiehPaakllvevaktqdeevgDGtttavvlaGeLlekaedLleqdihPtviveGyrkaaekalevideiaekidve....dkellkkvaetsltskavaeeakdklaelvveavkqvvekredgkykvdldnikiekkkGgsiedtelveGivvDkevvh...egmPkrvenakialldaplevekteidaklkitspdqlkkfldqeeallkemvdkiadaGanvvicqkgiDdlaqhylakkGilavrrvkksDieklaratGakivsslkeieesdLGeaelveerkvgedklvfvegaknakavtillrGgtehvvdeleRaleDalkvvksvledgkvvaGgGavevelakrlreyaakieGreqlaveafadaleeiprilaenaGldpidalvelRakhekegnknagvdvftgeiedmlelgvieplkvkeqaiksateaatlilriDdvia 519
                 +++l+egt+ ++g+  l sni+a +a+ ++v++tlGPrG+Dk++ d  G vti nDGat++k+++i hPa k lv+++ +qd+evgDGtt++v+laGe l++ +  +e+++hP viv+ +r+a + al  +de+  k+d++     +e+l+k a tsl+sk v + +k+  a++vv+av  + ++        +ld i ++k  Ggs+ d++lveG+   k       e+m k ++n+ki+ll+++le++    +a++++ ++   ++ +d+e +++ ++  ki+++Ga +v+++  i dla +y+a++G++   rv ++D++++a+atGa   +s ++++++ +G+ +l eer+vg ++  f +g+k a + ti+lrGg+e+ ++e+eR+l+Da+   + +l +++vvaGgGa+e+e++  lre ++ i G+ ql + a+a+ale ipr +a naG+dp d+l +lR kh++ g ++ gvdv++  i d++e  v+e+  +k++a+++a+eaa lil +D+ ++
  MMETSP1137-20121227|6510_1  15 IVLLREGTDTSQGKPQLISNINACQAIVDVVRTTLGPRGMDKLIHDDNGRVTISNDGATLMKQLQIVHPAGKTLVDISMSQDAEVGDGTTSVVLLAGEFLRECKPYIEEGVHPQVIVKAFREACKLALGRLDELEVKLDMQtpekLREMLEKSAGTSLSSKLV-SGQKAFFAKMVVDAVLGIGKTG-------NLDMIGMKKVPGGSLIDSMLVEGVAFKKTFSYagfEQMTKYFDNPKIVLLNVELELKAERDNAEVRVADVAAYQRVVDAEWDIIYDKLAKIVASGASIVLSRLAIGDLATQYFADRGLFCAGRVAEDDLKRVAKATGAVLQTSCNDLSADIMGSCGLFEERQVGGERFNFFKGCKCADTNTIILRGGAEQFIEEAERSLHDAIMNTRRLLVNPSVVAGGGAIEMEISAFLRERSRGIYGKTQLLIAAYAKALEVIPRQVASNAGMDPTDVLNKLRMKHAH-GGTWFGVDVVENGICDTFESFVWEATVMKRNALAAASEAACLILSVDETVR 530
                 789**************************************************************************************************************************************9998444347899999**********.699************7665553.......799*************************9765223789*************************************************************************************************************************************************************************************************************************************************6.89*********************************************9875 PP

>> TIGR02344  chap_CCT_gamma: T-complex protein 1, gamma subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  402.8   0.8    1e-123  4.2e-121       2     520 ..      15     529 ..      14     534 .. 0.95

  Alignments for each domain:
  == domain 1    score: 402.8 bits;  conditional E-value: 1e-123
   TIGR02344   2 vlvlnqntkresGrkaqlsniqaakavadiirttlGpkamlkmlldplGgivltndGnailreidvahpaakslielsrtqdeevGdGttsviilaGellaaaepfleknihptvivraykkaledalkvleelsipvdvedeakllklvkssigt....kfvsrwsdlvvdlaldavktvkleerngrklevdikryakvekipGGeiedsavlkGvllnkdvthp...kmrrkienprivlldcpleykkgesqtnveilkeedwnrllqleeeevkklceeiiavkpdlvitekGvsdlaqhyllkanisairrvrktdnnriarvsGativnrveelkesdvGtgaGlfevkkiGdeyftflteckdpkactillrGaskdvlnevernlqdalavarnvllepklvpGGGatelavsvklkkkakklegveqlpyeavadaleviprtlvqncGvnvirtltelrakhaqeekkalGidGetGkivdmkekgiweplavklqtiktaiesavlllriddiv 520
                 +++l++ t+ ++G+   +sni+a++a+ d++rttlGp+ m k++ d  G + ++ndG ++++++++ hpa k+l+++s +qd evGdGttsv++laGe+l +++p++e+ +hp viv+a+++a + al  l+el +++d++  +kl ++++ s gt    k+vs  +   +++ +dav  + ++       ++d+   + ++k+pGG++ ds++++Gv + k    +   +m ++ +np+ivll++ le k    +++v + +   ++r+++ e + +    ++i+a+ + +v++   + dla  y++ +++    rv   d +r+a+++Ga++ + +++l   d+   +Glfe +++G e f f++ ck  ++ ti+lrG++ + ++e er l+da+  +r +l++p++v+GGGa+e+++s+ l+++++ + g +ql + a a+alevipr ++ n+G+++   l++lr kha++  +++G+d  +  i d  e  +we++++k +++ +a e+a+l+l +d+ v
  MMETSP1137-20121227|6510_1  15 IVLLREGTDTSQGKPQLISNINACQAIVDVVRTTLGPRGMDKLIHDDNGRVTISNDGATLMKQLQIVHPAGKTLVDISMSQDAEVGDGTTSVVLLAGEFLRECKPYIEEGVHPQVIVKAFREACKLALGRLDELEVKLDMQTPEKLREMLEKSAGTslssKLVSGQKAFFAKMVVDAVLGIGKTG------NLDM---IGMKKVPGGSLIDSMLVEGVAFKKTFSYAgfeQMTKYFDNPKIVLLNVELELKAERDNAEVRVADVAAYQRVVDAEWDIIYDKLAKIVASGASIVLSRLAIGDLATQYFADRGLFCAGRVAEDDLKRVAKATGAVLQTSCNDLSA-DIMGSCGLFEERQVGGERFNFFKGCKCADTNTIILRGGAEQFIEEAERSLHDAIMNTRRLLVNPSVVAGGGAIEMEISAFLRERSRGIYGKTQLLIAAYAKALEVIPRQVASNAGMDPTDVLNKLRMKHAHG-GTWFGVDVVENGICDTFESFVWEATVMKRNALAAASEAACLILSVDETV 529
                 7889999******************************************************************************************************************************************9999987766611115555566777888888888887766......3443...67789*******************998765569**************************************************************************************************************85.77779******************************************************************************************************************************9.59********************************************988 PP

>> TIGR02340  chap_CCT_alpha: T-complex protein 1, alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  401.5   0.7  3.2e-123  1.3e-120       6     531 ..      23     533 ..      18     538 .. 0.95

  Alignments for each domain:
  == domain 1    score: 401.5 bits;  conditional E-value: 3.2e-123
   TIGR02340   6 erksGedvrkqnvlavvavanivktslGPvGldkmlvddvGdvtitndGatilkklevehPaakvlvelaqlqdkevGdGttsvvilaaellkradelvkrkvhPtsvisGyrlalkeavkyike...klavsveelgkealinvaktslsskiislesdlfsnlvvdavlavkvtnekgetkyPikavnilkahGksaresllvkGyalnctvas...qqmpkrvkkakialldfnlqkaklklgvqivvedpeklekirkreadivkerikkilkaGanvvlttkGiddlalkylveagvmavrrvkkedlkriakatGatlvssladleGeetleasllGeaeevveeriaddelilikgtkkkksasiilrGandvlldemerslhdalcvvkrtleskkvvaGgGaveaalsiyleelattlgsreqlaiaefaealliiPkvlavnaakdstelvaklralhaaaqlkeekkklkflGldlsngkirdnveaGvlePavskvkslkfateaaitilriddliklkp 531
                 + ++G+     n+ a++a+ ++v+t+lGP G+dk++ dd G vti ndGat++k+l++ hPa+k lv+++  qd evGdGttsvv+la e+l++++  +++ vhP ++++ +r a+k a+  ++e   kl +++ e  +e l   a tslssk++s +  +f+++vvdavl + +t         ++ + + k +G+s  +s+lv+G a++ t +    +qm k   ++ki+ll+++l+ +  +   ++ v d +  +++ + e di+ +++ ki+++Ga +vl    i dla++y+ + g+++  rv ++dlkr+akatGa l +s  dl+      a ++G++  ++e +++ +   ++kg k +++ +iilrG  +++++e erslhda++  +r l   +vvaGgGa+e+ +s +l e ++ +  ++ql ia++a+al +iP+++a+na+ d t+++ klr  ha+           ++G+d++++ i+d++e  v e +v k   l +a eaa  il +d+ ++   
  MMETSP1137-20121227|6510_1  23 DTSQGKPQLISNINACQAIVDVVRTTLGPRGMDKLIHDDNGRVTISNDGATLMKQLQIVHPAGKTLVDISMSQDAEVGDGTTSVVLLAGEFLRECKPYIEEGVHPQVIVKAFREACKLALGRLDElevKLDMQTPEKLREMLEKSAGTSLSSKLVSGQKAFFAKMVVDAVLGIGKTG-------NLDMIGMKKVPGGSLIDSMLVEGVAFKKTFSYagfEQMTKYFDNPKIVLLNVELELKAERDNAEVRVADVAAYQRVVDAEWDIIYDKLAKIVASGASIVLSRLAIGDLATQYFADRGLFCAGRVAEDDLKRVAKATGAVLQTSCNDLS------ADIMGSCGLFEERQVGGERFNFFKGCKCADTNTIILRGGAEQFIEEAERSLHDAIMNTRRLLVNPSVVAGGGAIEMEISAFLRERSRGIYGKTQLLIAAYAKALEVIPRQVASNAGMDPTDVLNKLRMKHAH--------GGTWFGVDVVENGICDTFESFVWEATVMKRNALAAASEAACLILSVDETVRNPA 533
                 56778888889************************************************************************************************************97765533378889999999**********************************8877.......4788999*******************99865322389*****************99999999*********************************************************************************99976......5589***************************************************************************************************************************99975........4579********************************************998655 PP

>> TIGR02342  chap_CCT_delta: T-complex protein 1, delta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  368.8   0.7  2.1e-113  8.6e-111      12     514 ..      32     529 ..      23     531 .. 0.95

  Alignments for each domain:
  == domain 1    score: 368.8 bits;  conditional E-value: 2.1e-113
   TIGR02342  12 tsnivaakavadairtslGpkGmdkliqekkGeviitndGatilkqlevlhpaakllvelskaqdieaGdGttsvvvlaGalldaaekllekgihptiisesfqsaadealkilkelsipvdls....drealiksattslsskvvsqyssllaplavdavlkvidsekdknvdlkdikvvkklGgtiddtelieGvvltqkasks..aggptriekakigliqfqlsapktdmenqvvvsdyaqmdrvlkeerkyilnlvkkikkaganvlliqksilrdavndlalhflakkkilvvkdiereevefisktlGckpvasidkltadklGkaelveevksddskivkitGvknagktvsvlvrGsnklvideaerslhdalcvirslvkkraliaGGGapeieialklskkarelkGvesyivrafadalevipytlaenaGlnpikvvtelrnrhaqGektaGisvrkggitdileeevlqpllvtksavtlasetvrsilkiddiv 514
                  sni a +a+ d++rt+lGp+Gmdkli++++G v+i+ndGat++kql+++hpa k lv++s +qd e GdGttsvv+laG +l  ++  +e g+hp++i ++f++a++ al  l+el  ++d++     re+l ksa tslssk+vs    ++a + vdavl + ++      +l +i + k  Gg + d+ l+eGv +++++s +  +  ++  ++ ki l++  l       +++v v d a+  rv+  e   i +   ki ++ga ++l      r a+ dla  ++a +++++   +  ++++ ++k+ G+   +s + l+ad +G+  l ee ++++ +     G+k  + t ++++rG  +  i+eaerslhda+   r l+ + +++aGGGa e+ei+  l++++r + G +++++ a+a+alevip  +a naG++p +v+ +lr +ha+G +  G++v++ gi d+ e  v   +++++ a+  ase+   il +d+ v
  MMETSP1137-20121227|6510_1  32 ISNINACQAIVDVVRTTLGPRGMDKLIHDDNGRVTISNDGATLMKQLQIVHPAGKTLVDISMSQDAEVGDGTTSVVLLAGEFLRECKPYIEEGVHPQVIVKAFREACKLALGRLDELEVKLDMQtpekLREMLEKSAGTSLSSKLVSGQKAFFAKMVVDAVLGIGKT-----GNLDMIGMKKVPGGSLIDSMLVEGVAFKKTFSYAgfEQMTKYFDNPKIVLLNVELELKAERDNAEVRVADVAAYQRVVDAEWDIIYDKLAKIVASGASIVL-----SRLAIGDLATQYFADRGLFCAGRVAEDDLKRVAKATGAVLQTSCNDLSADIMGSCGLFEERQVGGERFNFFKGCKC-ADTNTIILRGGAEQFIEEAERSLHDAIMNTRRLLVNPSVVAGGGAIEMEISAFLRERSRGIYGKTQLLIAAYAKALEVIPRQVASNAGMDPTDVLNKLRMKHAHGGTWFGVDVVENGICDTFESFVWEATVMKRNALAAASEAACLILSVDETV 529
                 59************************************************************************************************************************98665569999*******************************886.....788999988889****************99986411233445799*********9876666667899********************************98.....4889*********************************************************************975.6899***************************************************************************************************************************************************977 PP

>> TIGR02341  chap_CCT_beta: T-complex protein 1, beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  344.3   2.8  5.8e-106  2.4e-103      13     514 ..      28     531 ..      16     536 .. 0.94

  Alignments for each domain:
  == domain 1    score: 344.3 bits;  conditional E-value: 5.8e-106
   TIGR02341  13 enarlssfvgaiavgdlvkstlgpkgmdkillsasseasivvtndgatilksialdnpaakvlvdiskvqddevgdgttsvtvlaaellreaeklvnkkihpqtiiegyrlatkaalealkksavdns.sdkvkfredllkiarttlsskilsqdkdhfaklavdavlrlkgstnleaiqiikklggklddsyldegfllekki...gvnq.pkrienakiliantaldtdkvkvfgsrvrvdstaklaelekaekekmkekvekilkhninvfinrqliynypeqlfadagvmaiehadfegverlalvtggeivstfdepelvklgscdlieeiligedkllkfsgvklgeactivlrgatqqildeaerslhdalavlsqtvkesrtvlgggcaellmakaveeeaqkvagkkalaveafakalrqlptiladnagfdsaelvaklraahaegnstagldleegeiadlrklgivesyklkravvssaaeaaevllrvdniika 514
                 +   +s +    a+ d+v++tlgp+gmdk++   +    ++++ndgat++k++ +  pa k lvdis+ qd evgdgttsv++la e+lre +  +++ +hpq+i++ +r+a k al  l +  v+   + + k+re l+k a t+lssk++s +k  fak+ vdavl +  ++nl+ i + k+ gg+l ds l eg  ++k++   g  q  k  +n ki++ n  l+  k     + vrv  +a   ++  ae + + +k++ki + +  + + r  i +   q fad g+ +      + ++r+a  tg  + ++ ++ +   +gsc l ee  +g +++  f g+k  ++ ti+lrg ++q ++eaerslhda+    +   +  +v+ggg+ e+ ++  + e ++ + gk  l + a+akal+ +p  +a nag+d ++++ klr +ha+g +  g+d+ e  i+d  +  + e+  +kr  +++a+eaa ++l vd+ ++ 
  MMETSP1137-20121227|6510_1  28 KPQLISNINACQAIVDVVRTTLGPRGMDKLIHDDNG--RVTISNDGATLMKQLQIVHPAGKTLVDISMSQDAEVGDGTTSVVLLAGEFLRECKPYIEEGVHPQVIVKAFREACKLALGRLDELEVKLDmQTPEKLREMLEKSAGTSLSSKLVSGQKAFFAKMVVDAVLGIGKTGNLDMIGMKKVPGGSLIDSMLVEGVAFKKTFsyaGFEQmTKYFDNPKIVLLNVELEL-KAERDNAEVRVADVAAYQRVVDAEWDIIYDKLAKIVASGASIVLSRLAIGDLATQYFADRGLFCAGRVAEDDLKRVAKATGAVLQTSCNDLSADIMGSCGLFEERQVGGERFNFFKGCKCADTNTIILRGGAEQFIEEAERSLHDAIMNTRRLLVNPSVVAGGGAIEMEISAFLRERSRGIYGKTQLLIAAYAKALEVIPRQVASNAGMDPTDVLNKLRMKHAHGGTWFGVDVVENGICDTFESFVWEATVMKRNALAAASEAACLILSVDETVRN 531
                 4444455555679****************9988766..99*********************************************************************************999985416679*********************************************************************98333444427889************97.677789*****************************************************************************999999999999*********************************************************************************************************************************************************************************9985 PP

>> TIGR02343  chap_CCT_epsi: T-complex protein 1, epsilon subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  337.0   1.1    1e-103  4.3e-101      23     530 ..      25     530 ..      10     532 .. 0.95

  Alignments for each domain:
  == domain 1    score: 337.0 bits;  conditional E-value: 1e-103
   TIGR02343  23 lkGleakksniaaakavasilrtslGpkGldkiliskdgditvtndGatilekmdldeeiakllvelsksqdeeiGdGttgvvvlasalleqaeklldkGihpikiaeGfekaakvavekleeiaeeisvd..ednketllkaaktslgskivskskrrlaeiavdavlavadlerkdvdfdlikvegkvGgsledtklikGilidkdlshp...qmkkevkdakiailtcpfeppkpktkhkldissveeykklekyekekfeemiddikksGanlvicqwGfddeanhlllqndlpavrwvgGkeleliaiatgGrivprfeelseeklGkaklvreksfGttkdrllvieqskeskavtilvrGgnkliieeakrslhdalcvvrnlikdsrivyGGGaaeiacslaveeeadklsgveqyairafaealeeiplalaensGldpietlsevkakqlkeknpalGvdcleeGtndmkelkvletligkkqqillatqlvkmilkiddvis 530
                  +G     sni a++a+  ++rt+lGp+G+dk++ + +g +t++ndGat+++++++ ++  k lv++s sqd e+GdGtt+vv+la+ +l + +  +++G+hp  i + f +a+k+a+ +l+e+  +++++  e+ +e+l k+a tsl+sk+vs +k  +a+++vdavl +     k  ++d+i +++  Ggsl d+ l++G+  +k +s+    qm+k  ++ ki +l   +e    +   ++ ++ v  y+++ + e +   + + +i  sGa++v+ +    d a + + +++l     v+  +l+ +a atg  + +  ++ls++ +G+++l +e+++G   +r+ + + +k++ + ti++rGg++  ieea+rslhda+   r l+ + ++v GGGa e+ +s  + e + ++ g  q  i a+a+ale ip  +a n+G+dp ++l +++ k  +   + +Gvd  e+G  d  e +v e+ + k++ +  a++   +il +d+ + 
  MMETSP1137-20121227|6510_1  25 SQGKPQLISNINACQAIVDVVRTTLGPRGMDKLIHDDNGRVTISNDGATLMKQLQIVHPAGKTLVDISMSQDAEVGDGTTSVVLLAGEFLRECKPYIEEGVHPQVIVKAFREACKLALGRLDELEVKLDMQtpEKLREMLEKSAGTSLSSKLVSGQKAFFAKMVVDAVLGIG----KTGNLDMIGMKKVPGGSLIDSMLVEGVAFKKTFSYAgfeQMTKYFDNPKIVLLNVELELKAERDNAEVRVADVAAYQRVVDAEWDIIYDKLAKIVASGASIVLSRLAIGDLATQYFADRGLFCAGRVAEDDLKRVAKATGAVLQTSCNDLSADIMGSCGLFEERQVGG--ERFNFFKGCKCADTNTIILRGGAEQFIEEAERSLHDAIMNTRRLLVNPSVVAGGGAIEMEISAFLRERSRGIYGKTQLLIAAYAKALEVIPRQVASNAGMDPTDVLNKLRMKHAHG-GTWFGVDVVENGICDTFESFVWEATVMKRNALAAASEAACLILSVDETVR 530
                 56778889******************************************************************************************************************998888776225699********************************997....56799*****************************74444********************************************************************************************************************************7..5788899*******************************************************************************************************998765.5789******************************************9876 PP

>> TIGR02346  chap_CCT_theta: T-complex protein 1, theta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  293.1   0.1   1.8e-90   7.3e-88       5     517 ..      17     529 ..      13     541 .. 0.94

  Alignments for each domain:
  == domain 1    score: 293.1 bits;  conditional E-value: 1.8e-90
   TIGR02346   5 llkeGyrhlsgleeavlknieaikelseitrtslGPngmnklvinhleklfvtnDaatilrelevqhPaakllvlaskaqeeelGDgtnlvlvlagelLekaeelirlGlspseiikGyelalkkalevLeelvvl.evkdleekee.likalkaslsskqlgn.edilaelvakaiitvlPknsekfnvdnirvvkllGgslsdsevlkGlvlkrea.....egsvkrvkdakvavfscpldtattetkGtvLlknaeelldyskgeekkiealikeiadsgvkvivaggsvsdlalhyvekykilvlkisskfelrrlckvvgatalvrlsapspeelGlvdsvkveeigskkvtvikqeeedskistivLrGstknllddieraidDGvnvvkalvkdsrllpGagateieLakklkkyaeklkgleqyaikkfaeafeiiPrtlaenaGlnanevlskLyaahkkgnkslgidiekesdavkdvkeekiyDllaakkfaiklateaavtvLkvDqii 517
                 ll+eG+ + +g   +++ ni+a++ + +++rt+lGP+gm+kl+ +   ++ ++nD at++++l+++hPa k lv++s  q+ e+GDgt  v+ lage+L++++  i+ G++p+ i+k +  a+k al  L+el v  ++++ e+  e l+k   +slssk ++  + ++a++v +a++ +     ++ n+d i + k+ Ggsl ds +++G+ +k+       e   k  ++ k++ ++  l+ ++      v + +         +e   i +++ +i  sg++++++  +++dla  y    +++     +  +l+r++k+ ga+ ++  +  s + +G++   + + +g+++   +k  +  + ++ti+LrG +++++++ er+++D +   + l+ +  +++G+ga e+e++  l++ +    g +q+ i  +a+a e+iPr +a naG+++++vl+kL  +h +g +  g+d+ ++   + d+ e+ +++    k+ a+  a+eaa+ +L+vD  +
  MMETSP1137-20121227|6510_1  17 LLREGTDTSQGK-PQLISNINACQAIVDVVRTTLGPRGMDKLIHDDNGRVTISNDGATLMKQLQIVHPAGKTLVDISMSQDAEVGDGTTSVVLLAGEFLRECKPYIEEGVHPQVIVKAFREACKLALGRLDELEVKlDMQTPEKLREmLEKSAGTSLSSKLVSGqKAFFAKMVVDAVLGIG----KTGNLDMIGMKKVPGGSLIDSMLVEGVAFKKTFsyagfEQMTKYFDNPKIVLLNVELELKAERDNAEVRVADVAAYQRVVDAEWDIIYDKLAKIVASGASIVLSRLAIGDLATQYFADRGLFCAGRVAEDDLKRVAKATGAVLQTSCNDLSADIMGSCGLFEERQVGGERFNFFKGCKC-ADTNTIILRGGAEQFIEEAERSLHDAIMNTRRLLVNPSVVAGGGAIEMEISAFLRERSRGIYGKTQLLIAAYAKALEVIPRQVASNAGMDPTDVLNKLRMKHAHGGTWFGVDVVENG--ICDTFESFVWEATVMKRNALAAASEAACLILSVDETV 529
                 899**9998886.6899********************************************************************************************************************887688888876652678899******9865399**********9985....4689**************************97422222556677899**************************999999**********************************99999999999888999*********************************************9887.99**************************999999999***************************************************************************97765..57********************************977 PP

>> TIGR02347  chap_CCT_zeta: T-complex protein 1, zeta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  279.4   0.5   2.7e-86   1.1e-83       4     526 ..      17     532 ..      14     536 .. 0.94

  Alignments for each domain:
  == domain 1    score: 279.4 bits;  conditional E-value: 2.7e-86
   TIGR02347   4 llnkkaevlrkdaalkvnlnaakglqdvlktnlGPkGtlkmlvsgaGdikltkdGnvllkelqiqhPtasliaraaaaqdditGdGttstviligellkqaerlieeglhPrilteGleiakkealefleklki...kkeeevdrelllevartslrtkleaeladklteivvdavlaikkdeeeidlfmveilemkhklevdtklirGlvldhGarhP...dmkrkvknvyiltlnvsleyektevnsgfvyssaeereklveaerkfvddrvkkiielkkkvvekkadkgfvvinqkGidplsldllakegilalrrakrrnlerltlacGGealnsvedltpeslGyaGlvyetvigeekytfieevknPksvtilikgpndhtlkqikdavrdGlravknaiedkcvvaGagafeiallkklkeekksvkGkaklgveafaeallviPkvlvensGydvqevlvkledeadearevvgvdletgesivaelkgiwdnysvkkqllssatviasqlllvdevlraG 526
                 ll + +++++ +  l  n+na++++ dv++t lGP+G  k++ +  G + +  dG +l+k+lqi hP+ + +  ++ +qd  +GdGtts+v+l+ge+l+ ++ +ieeg+hP+++++ +  a k al  l++l +    ++ e  re+l++ a tsl  kl       ++++vvdavl i k ++   l m+ + ++   + +d  l++G+ +   + +    +m +   n  i+ lnv le      n+++   ++   +++v+ae   + d+++ki+               +v+ +  i  l+ + +a +g+++  r+   +l r+  a+G + + s +dl+ +++G +Gl  e  +g e++ f + +k   + ti+++g  ++ ++  + +++d +   +  + + +vvaG ga+e+ +++ l+e+ + + Gk++l + a+a+al viP+ +++n+G+d ++vl kl+ ++ ++++  gvd+  +  +++ ++ +w++  +k+++l +a+  a+ +l vde +r  
  MMETSP1137-20121227|6510_1  17 LLREGTDTSQGKPQLISNINACQAIVDVVRTTLGPRGMDKLIHDDNGRVTISNDGATLMKQLQIVHPAGKTLVDISMSQDAEVGDGTTSVVLLAGEFLRECKPYIEEGVHPQVIVKAFREACKLALGRLDELEVkldMQTPEKLREMLEKSAGTSLSSKLVSGQKAFFAKMVVDAVLGIGKTGN---LDMIGMKKVPGGSLIDSMLVEGVAFKKTFSYAgfeQMTKYFDNPKIVLLNVELELKAERDNAEVRVADVAAYQRVVDAEWDIIYDKLAKIVASGA----------SIVLSRLAIGDLATQYFADRGLFCAGRVAEDDLKRVAKATGAVLQTSCNDLSADIMGSCGLFEERQVGGERFNFFKGCKCADTNTIILRGGAEQFIEEAERSLHDAIMNTRRLLVNPSVVAGGGAIEMEISAFLRERSRGIYGKTQLLIAAYAKALEVIPRQVASNAGMDPTDVLNKLRMKHAHGGTWFGVDVVENGICDTFESFVWEATVMKRNALAAASEAACLILSVDETVRNP 532
                 566777888889999********************************************************************************************************************99933222334569**********************************99886...99************************9987642227999999*************99999****************************9986433..........3677778899***************************************************************************************************************************************************************************************9999************************************9975 PP

>> TIGR02348  GroEL: chaperonin GroL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.5   0.3   3.9e-15   1.6e-12      19     222 ..      39     250 ..      27     258 .. 0.78
   2 !   35.1   0.1   2.9e-12   1.2e-09     384     521 ..     388     530 ..     373     535 .. 0.85

  Alignments for each domain:
  == domain 1    score: 44.5 bits;  conditional E-value: 3.9e-15
   TIGR02348  19 dkladavkvtlGPkgrnvvleksfGaPkitkdGvtvakeieledkfenlGaklvkevasktndvaGdGtttatvlaqaivkeGlknvaaGanpielkrGiekavekvveelkklskevkdk..eeiaqvatis..........anndeeiGeliaeamekvgkdGvitveesksle....televveGmqfdrGyvspyfvtdaekmevelenplilitd 222
                 +++ d v++tlGP+g + +++ + G  +i +dG t+ k++++ ++    G  lv  ++   +   GdGtt  ++la  +++e    +  G+ p  + +   +a++ ++ +l++l  +++ +  e+++++   s          +++     +++ +a+  +gk G +++   k++      +  +veG+ f + +  +      e+m+  ++np+i++ +
  MMETSP1137-20121227|6510_1  39 QAIVDVVRTTLGPRGMDKLIHDDNGRVTISNDGATLMKQLQIVHP---AGKTLVD-ISMSQDAEVGDGTTSVVLLAGEFLRECKPYIEEGVHPQVIVKAFREACKLALGRLDELEVKLDMQtpEKLREMLEKSagtslssklvSGQKAFFAKMVVDAVLGIGKTGNLDMIGMKKVPggslIDSMLVEGVAFKKTFSYAG----FEQMTKYFDNPKIVLLN 250
                 67899***********************************98766...6778885.566667778**********************************************998877654322666555443300001111113445567899******9**9998887777665411113456899****99987654....58999999999999876 PP

  == domain 2    score: 35.1 bits;  conditional E-value: 2.9e-12
   TIGR02348 384 etelkekkarvedalnatra.aveeGivaGGGvallraaeklee.lkeksedekvGveivkraleaPlrqiaenaGkdgavvvekvkekk...deevGfnaatdeyedlveaGiidpakvtrsalqnaasiagllltteavva 521
                 e  + e    + da+ +tr   v+  +vaGGG+  +++++ l e  +     +++ +    +ale   rq+a+naG+d++ v++k++ k+   ++ +G +  ++   d +e+ + +++ + r al  a+  a l+l  + +v 
  MMETSP1137-20121227|6510_1 388 EQFIEEAERSLHDAIMNTRRlLVNPSVVAGGGAIEMEISAFLRErSRGIYGKTQLLIAAYAKALEVIPRQVASNAGMDPTDVLNKLRMKHahgGTWFGVDVVENGICDTFESFVWEATVMKRNALAAASEAACLILSVDETVR 530
                 555667777899**99987527899*****************99455556699999999**************************9988511145689**************************************9887776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (597 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       149  (0.0363237); expected 82.0 (0.02)
Passed bias filter:                      107  (0.0260848); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                        10  (0.00243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.62u 0.18s 00:00:00.80 Elapsed: 00:00:00.62
# Mc/sec: 1270.93
//
Query:       MMETSP1137-20121227|6511_1  [L=508]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.8e-99  330.3   0.0    3.4e-99  330.1   0.0    1.1  1  TIGR00322 diphth2_R: diphthamide biosynthesis enzyme Dph1/Dph2 domain
    8.1e-50  167.6   0.0      1e-49  167.3   0.0    1.1  1  TIGR03682 arCOG04112: diphthamide biosynthesis enzyme Dph2
    9.7e-33  111.4   0.0    2.2e-22   77.3   0.0    2.1  2  TIGR00272 DPH2: diphthamide biosynthesis protein 2


Domain annotation for each model (and alignments):
>> TIGR00322  diphth2_R: diphthamide biosynthesis enzyme Dph1/Dph2 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  330.1   0.0  2.5e-102   3.4e-99       1     320 []      62     372 ..      62     372 .. 0.98

  Alignments for each domain:
  == domain 1    score: 330.1 bits;  conditional E-value: 2.5e-102
   TIGR00322   1 ynfeidktveeikkrnakrVaLQfPdgllkdavevadllkekakgaevyilgdttyGaCcvdevaakhlgadliiHyGhsclspi.tsrlpvlyvfvkieidveklvealkealedkekkivllttvqyahaldeikkileeagyeeviipqlkprvlspgevlgctspaleadeedkvllfigdgrfhllglalatpkpkvyvydpysskleeeeseaerllrrRyaaiekakdakkvGIivgtlggqgrlelierlkellkkagkkaytilvgeinpakLanfpeiDafVvvaCprlslddskefekpvltpyEleial 320
                 ynfe++kt++++++ +a++VaLQfP+gll++a+ +ad++ e+++gae++i+gd+tyGaCcvd++aa++l++ l++HyGhscl+p+ +   +vlyvfv+i+id+ ++v++l ++  +k  +++l++t+q+  al+  +     a++  ++ipq kp  ls ge+lgct+p +++    +v++f++dgrfh++++++a+p+  +y+ydpy + l+ e +++er+ r+   a+++a  a+++G+++gtlg+qg+++++ +l+++l++ag +++t+l++e+ p+kLa+fpe+ a+V+v Cprls+d++++f +p+l+pyE+e+al
  MMETSP1137-20121227|6511_1  62 YNFEVPKTIWRVQQLKATQVALQFPEGLLMFATTLADII-ERFTGAEAVIMGDVTYGACCVDDLAAAALDCGLLVHYGHSCLIPVdRMAADVLYVFVEISIDIPHFVDSLVAN-LPKSTRLGLCATIQFTGALHGXAPLA--AHFAAATIPQCKP--LSAGETLGCTAPTIDNC---DVVVFVADGRFHPEAVMIANPSLPLYRYDPYGKALTLEGYDHERM-RQXADAVKRAAAASSWGLVLGTLGRQGNPDILFHLQQILRNAGVHFVTVLLSEVLPSKLAEFPEVGAWVQVCCPRLSIDWGHAFGAPLLSPYEAEVAL 372
                 89*************************************.*********************************************99999*********************99.79999****************99888..88888********..************99998...8899*************************************9887.66799*******************************************************************************************97 PP

>> TIGR03682  arCOG04112: diphthamide biosynthesis enzyme Dph2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  167.3   0.0   7.3e-53     1e-49       2     306 ..      78     385 ..      77     387 .. 0.92

  Alignments for each domain:
  == domain 1    score: 167.3 bits;  conditional E-value: 7.3e-53
   TIGR03682   2 akkvllqlPeGLkrealeiaeklee.kgvevilsgepvfGaCDladdevlel.vDlivhlGHspl.envkseikvifieakskedveeeveealeelkk.kkvglvttiqylkklekvaeiLeekgievvigkgdkrvaapgqvLGCnfsaaksveadavlfvgtGkFhplglal.atkkeVvlvdplsgkvedieeeiekllrvrlakiskaldakkvgilvstkkGQlrkelaeelkklleekgkeallvlldeispdkllnl.eldavvvtaCPRiaiDdaerfkkpvltpeEleivlgkr...keyklde 306
                 a +v+lq+PeGL + a  +a+ +e  +g+e+++ g+ ++GaC + d  +  l + l+vh+GHs l +  +    v+++ ++ + d+ + v++ +++l k +++gl++tiq++  l+     L  +  ++ i++ +     +g  LGC+   ++  ++d+v+fv++G+Fhp  + + ++  + + +dp+ + +  +e   ++ +r+   ++++a  a+++g++++t   Q  +++  +l++ l+++g++ ++vll e+ p+kl ++ e+ a v + CPR++iD  + f  p+l+p+E+e++lg r    +y +d 
  MMETSP1137-20121227|6511_1  78 ATQVALQFPEGLLMFATTLADIIERfTGAEAVIMGDVTYGACCVDDLAAAALdCGLLVHYGHSCLiPVDRMAADVLYVFVEISIDIPHFVDSLVANLPKsTRLGLCATIQFTGALHGX-APLAAHFAAATIPQCK--PLSAGETLGCTAPTID--NCDVVVFVADGRFHPEAVMIaNPSLPLYRYDPYGKAL-TLEGYDHERMRQXADAVKRAAAASSWGLVLGTLGRQGNPDILFHLQQILRNAGVHFVTVLLSEVLPSKLAEFpEVGAWVQVCCPRLSIDWGHAFGAPLLSPYEAEVALGARqwlAQYPMDY 385
                 789********************888******************999999999**********98555567788**********************9888***************998.8999898888888877..6999***********9..9******************978899********9776.45555567789999**********************************************************88***********************************997777888875 PP

>> TIGR00272  DPH2: diphthamide biosynthesis protein 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.3   0.0   1.6e-25   2.2e-22      36     159 ..      63     184 ..      38     195 .. 0.86
   2 !   32.1   0.0     8e-12   1.1e-08     267     375 ..     273     379 ..     254     410 .. 0.87

  Alignments for each domain:
  == domain 1    score: 77.3 bits;  conditional E-value: 1.6e-25
   TIGR00272  36 fyeieatveyikqgneqrvaLqFPDellkdsekvvklleskfreskkkvfvLaDtaYssCCvDevaaehvdaeavvhfGeaClsaiskl..pvvYvlGslpidldklekelqraaddlsekivLla 159
                  +e+ +t+  ++q +  +vaLqFP+ ll  +  ++ ++e  f  + ++  ++ D +Y++CCvD+ aa+ +d+  +vh+G++Cl ++ ++  +v+Yv+ ++ id+ +++  l   +++ s ++ L a
  MMETSP1137-20121227|6511_1  63 NFEVPKTIWRVQQLKATQVALQFPEGLLMFATTLADIIER-F--TGAEAVIMGDVTYGACCVDDLAAAALDCGLLVHYGHSCLIPVDRMaaDVLYVFVEISIDIPHFVDSLVANLPK-STRLGLCA 184
                 48899999999***************************98.5..5567799***********************************976559****************999988887.66665555 PP

  == domain 2    score: 32.1 bits;  conditional E-value: 8e-12
   TIGR00272 267 kLrrRyklveklrdagviGivvgtlgvdktreavnelrklikkagkkiYllavGkvnlvaklanfedidvfvllaCsessvidskefyrPivtpfelelaLseevtWaa 375
                 ++r+    v+++  a   G+v+gtlg +   +++ +l++++++ag     +    v  + kla f ++  +v + C+  s+   + f  P+++p+e+e+aL     W a
  MMETSP1137-20121227|6511_1 273 RMRQXADAVKRAAAASSWGLVLGTLGRQGNPDILFHLQQILRNAGVHFVTVLLSEVL-PSKLAEFPEVGAWVQVCCPRLSIDWGHAFGAPLLSPYEAEVALGAR-QWLA 379
                 5677778899***********************************865555566665.7*********************98899999*************754.4555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (508 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       105  (0.0255973); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.39u 0.17s 00:00:00.56 Elapsed: 00:00:00.48
# Mc/sec: 1396.88
//
Query:       MMETSP1137-20121227|6512_1  [L=506]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (506 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       105  (0.0255973); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.16s 00:00:00.50 Elapsed: 00:00:00.50
# Mc/sec: 1335.73
//
Query:       MMETSP1137-20121227|6515_1  [L=486]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.4e-54  182.2   0.0    5.2e-54  181.6   0.0    1.3  1  TIGR03719 ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family
    4.7e-36  122.6   1.8    1.4e-15   55.1   0.1    4.2  3  TIGR02857 CydD: thiol reductant ABC exporter, CydD subunit
      4e-34  115.9   1.6    5.5e-11   40.0   0.0    4.4  4  TIGR03873 F420-0_ABC_ATP: proposed F420-0 ABC transporter, ATP-binding protein
    3.3e-33  112.6   0.1    5.3e-14   49.9   0.0    4.1  3  TIGR01166 cbiO: cobalt ABC transporter, ATP-binding protein
      6e-33  112.1   0.1    1.7e-11   41.9   0.1    4.2  3  TIGR03864 PQQ_ABC_ATP: ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system
    1.2e-32  111.1  14.2    3.6e-10   36.9   0.0    4.9  5  TIGR02868 CydC: thiol reductant ABC exporter, CydC subunit
    1.3e-32  111.1   0.0    1.8e-11   42.0   0.0    4.7  5  TIGR02673 FtsE: cell division ATP-binding protein FtsE
    1.7e-32  110.8   0.0    2.7e-11   41.1   0.0    4.2  4  TIGR01188 drrA: daunorubicin resistance ABC transporter, ATP-binding protein
    2.1e-31  107.0   0.3    1.7e-13   48.5   0.0    4.1  3  TIGR01189 ccmA: heme ABC exporter, ATP-binding protein CcmA
      7e-31  105.5   0.0      9e-10   36.1   0.0    4.2  4  TIGR03265 PhnT2: putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein
    1.8e-30  103.8   0.0    3.5e-13   47.3   0.0    4.1  3  TIGR03608 L_ocin_972_ABC: putative bacteriocin export ABC transporter, lactococcin 972 group
    6.5e-30  102.3   0.0    8.4e-12   43.1   0.0    3.5  3  TIGR03740 galliderm_ABC: lantibiotic protection ABC transporter, ATP-binding subunit
    1.1e-27   95.1   0.1    1.3e-10   39.3   0.0    4.6  4  TIGR00960 3a0501s02: type II secretory pathway family protein
    1.9e-27   94.1   0.0    2.1e-08   31.7   0.0    4.4  4  TIGR02315 ABC_phnC: phosphonate ABC transporter, ATP-binding protein
    2.4e-27   93.7   0.0    8.7e-10   36.3   0.0    4.3  3  TIGR03410 urea_trans_UrtE: urea ABC transporter, ATP-binding protein UrtE
    3.9e-27   93.1   0.1    7.2e-11   39.9   0.0    4.0  3  TIGR00968 3a0106s01: sulfate ABC transporter, ATP-binding protein
    5.2e-27   92.9   0.0    8.1e-12   43.0   0.0    3.8  3  TIGR03522 GldA_ABC_ATP: gliding motility-associated ABC transporter ATP-binding subunit GldA
    6.4e-27   91.9   0.0    9.7e-09   31.8   0.0    4.2  4  TIGR03375 type_I_sec_LssB: type I secretion system ATPase
    1.1e-26   91.7   0.2    1.7e-10   38.5   0.0    4.1  3  TIGR02142 modC_ABC: molybdate ABC transporter, ATP-binding protein
    7.8e-26   88.7   0.0    1.5e-06   25.7   0.0    4.2  4  TIGR02324 CP_lyasePhnL: phosphonate C-P lyase system protein PhnL
    8.3e-25   85.4   0.0    3.4e-08   31.0   0.0    4.2  4  TIGR00972 3a0107s01c2: phosphate ABC transporter, ATP-binding protein
    1.3e-24   84.9   0.0    2.8e-08   31.5   0.0    4.3  3  TIGR02982 heterocyst_DevA: ABC exporter ATP-binding subunit, DevA family
    5.7e-24   82.7   0.3    1.5e-05   22.6   0.0    4.2  4  TIGR01277 thiQ: thiamine ABC transporter, ATP-binding protein
    6.3e-24   82.5   0.2    2.2e-08   31.4   0.1    4.0  3  TIGR03258 PhnT: 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT
    6.8e-24   82.4   0.1    1.6e-07   28.9   0.0    4.4  3  TIGR02211 LolD_lipo_ex: lipoprotein releasing system, ATP-binding protein
    7.2e-23   79.3   1.6    2.4e-06   25.3   0.0    4.2  4  TIGR03771 anch_rpt_ABC: anchored repeat-type ABC transporter, ATP-binding subunit
    1.9e-22   77.5   0.1    5.8e-08   29.9   0.0    4.2  4  TIGR01288 nodI: nodulation ABC transporter NodI
    2.8e-22   77.1   0.0    1.8e-06   25.4   0.0    4.2  4  TIGR01978 sufC: FeS assembly ATPase SufC
    4.9e-22   75.9   0.0    8.6e-07   25.6   0.0    4.1  4  TIGR02633 xylG: D-xylose ABC transporter, ATP-binding protein
    6.4e-22   75.7   1.6    1.3e-06   25.2   0.0    4.1  4  TIGR00955 3a01204: pigment precursor permease
    2.4e-21   73.7   1.7    5.7e-07   26.2   0.0    4.4  4  TIGR01842 type_I_sec_PrtD: type I secretion system ATPase
    3.5e-21   73.3   1.0    3.9e-05   20.3   0.0    4.1  4  TIGR02204 MsbA_rel: ABC transporter, permease/ATP-binding protein
    4.9e-21   72.9   0.2    3.3e-08   30.8   0.0    4.1  4  TIGR01187 potA: polyamine ABC transporter, ATP-binding protein
    4.9e-21   73.2   0.1      1e-06   26.3   0.0    4.2  4  TIGR02769 nickel_nikE: nickel import ATP-binding protein NikE
    1.4e-20   70.9   0.1      1e-07   28.4   0.0    4.1  3  TIGR03796 NHLM_micro_ABC1: NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein
    3.6e-20   70.5   0.0    0.00028   18.4   0.0    5.0  5  TIGR03411 urea_trans_UrtD: urea ABC transporter, ATP-binding protein UrtD
    3.9e-20   70.0   0.0    8.2e-05   19.8   0.0    4.2  4  TIGR03005 ectoine_ehuA: ectoine/hydroxyectoine ABC transporter, ATP-binding protein EhuA
      1e-19   68.1   0.0    7.8e-07   25.5   0.0    4.1  4  TIGR00958 3a01208: antigen peptide transporter 2
    2.7e-19   67.2   0.1    1.4e-07   28.6   0.0    4.2  4  TIGR03415 ABC_choXWV_ATP: choline ABC transporter, ATP-binding protein
    8.6e-19   65.7   0.0    8.1e-08   29.6   0.0    4.1  3  TIGR01186 proV: glycine betaine/L-proline transport ATP binding subunit
      2e-18   64.0   0.5    1.6e-08   31.3   0.0    4.3  3  TIGR02203 MsbA_lipidA: lipid A export permease/ATP-binding protein MsbA
    5.2e-18   62.7   0.0    1.8e-05   21.3   0.0    4.0  4  TIGR01193 bacteriocin_ABC: ABC-type bacteriocin transporter
    2.3e-17   61.2   0.0    6.2e-06   23.8   0.0    4.1  4  TIGR01184 ntrCD: nitrate ABC transporter, ATP-binding proteins C and D
    3.3e-16   56.7   0.0    7.7e-06   22.5   0.0    4.1  3  TIGR03269 met_CoM_red_A2: methyl coenzyme M reductase system, component A2
    9.2e-16   55.1   0.0    3.9e-06   23.3   0.0    4.0  4  TIGR01846 type_I_sec_HlyB: type I secretion system ATPase
    5.1e-14   49.5   0.1    1.4e-07   28.2   0.0    3.8  3  TIGR00954 3a01203: peroxysomal long chain fatty acyl transporter
      2e-13   47.9   0.0    4.4e-05   20.4   0.0    4.0  4  TIGR02314 ABC_MetN: D-methionine ABC transporter, ATP-binding protein
    5.4e-13   46.8   0.0    4.4e-05   20.9   0.0    4.2  4  TIGR02323 CP_lyasePhnK: phosphonate C-P lyase system protein PhnK
    2.8e-12   43.7   0.0    0.00096   15.6   0.0    4.1  4  TIGR03797 NHLM_micro_ABC2: NHLM bacteriocin system ABC transporter, ATP-binding protein
    1.1e-11   41.9   0.0    0.00043   16.8   0.0    4.1  4  TIGR01192 chvA: glucan exporter ATP-binding protein
    2.4e-11   41.3   0.0     0.0016   15.7   0.0    4.1  4  TIGR02770 nickel_nikD: nickel import ATP-binding protein NikD
    8.5e-10   34.7   0.4      0.019   10.4   0.0    4.0  4  TIGR00956 3a01205: pleiotropic drug resistance family protein
    1.7e-09   33.6   0.0      0.048    8.8   0.0    4.0  4  TIGR01271 CFTR_protein: cystic fibrosis transmembrane conductor regulator (CFTR)
    3.3e-07   25.3   0.1    0.00042   15.1   0.0    3.3  3  TIGR01257 rim_protein: rim ABC transporter
    9.5e-07   24.4   0.1     0.0092   11.2   0.0    3.3  3  TIGR00957 MRP_assoc_pro: multi drug resistance-associated protein (MRP)
    4.5e-06   22.9   0.0      0.074    9.0   0.0    3.4  4  TIGR00630 uvra: excinuclease ABC subunit A
    6.7e-06   21.9   3.4       0.42    6.1   0.0    4.0  4  TIGR02168 SMC_prok_B: chromosome segregation protein SMC
    6.7e-06   23.3   0.7      0.037   11.0   0.0    3.0  3  TIGR00611 recf: DNA replication and repair protein RecF
    2.4e-05   20.3   6.7     0.0013   14.6   0.0    3.2  3  TIGR00618 sbcc: exonuclease SbcC
      5e-05   19.0   1.0       0.46    5.9   0.0    3.9  4  TIGR02169 SMC_prok_A: chromosome segregation protein SMC
    6.9e-05   20.5   0.1      0.051   11.1   0.0    2.5  2  TIGR00017 cmk: cytidylate kinase
    7.7e-05   20.2   0.5      0.072   10.4   0.0    2.6  2  TIGR03420 DnaA_homol_Hda: DnaA regulatory inactivator Hda
    0.00023   18.2   0.1       0.19    8.7   0.0    2.3  2  TIGR00750 lao: LAO/AO transport system ATPase
    0.00031   18.2   0.1       0.09   10.2   0.0    2.3  2  TIGR03263 guanyl_kin: guanylate kinase
    0.00031   16.9   1.1      0.078    9.0   0.0    2.5  3  TIGR00929 VirB4_CagE: type IV secretion/conjugal transfer ATPase, VirB4 family
    0.00032   18.3   0.1       0.23    9.0   0.0    2.5  2  TIGR02322 phosphon_PhnN: phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN
     0.0013   16.3   0.1       0.13    9.8   0.0    2.5  2  TIGR00041 DTMP_kinase: thymidylate kinase
     0.0021   15.8   0.3      0.092   10.4   0.0    2.3  2  TIGR00150 HI0065_YjeE: ATPase, YjeE family
     0.0026   14.4   0.1       0.13    8.7   0.0    2.4  2  TIGR03689 pup_AAA: proteasome ATPase
     0.0027   14.0   4.6       0.46    6.7   0.0    3.1  3  TIGR03185 DNA_S_dndD: DNA sulfur modification protein DndD
     0.0036   14.4   0.0       0.73    6.8   0.0    2.2  2  TIGR01526 nadR_NMN_Atrans: nicotinamide-nucleotide adenylyltransferase
      0.005   14.3   0.2       0.18    9.3   0.0    2.3  2  TIGR00455 apsK: adenylylsulfate kinase
     0.0056   14.0   0.1        0.2    9.0   0.0    2.3  2  TIGR02640 gas_vesic_GvpN: gas vesicle protein GvpN
     0.0057   14.1   0.6       0.71    7.3   0.0    2.5  2  TIGR01351 adk: adenylate kinases
     0.0071   12.8   0.0       0.16    8.3   0.0    2.8  2  TIGR01194 cyc_pep_trnsptr: cyclic peptide transporter
  ------ inclusion threshold ------
      0.011   12.1   0.0       0.11    8.8   0.0    1.9  2  TIGR00602 rad24: checkpoint protein rad24
      0.014   13.0   0.1        2.7    5.6   0.0    2.3  2  TIGR00231 small_GTP: small GTP-binding protein domain
      0.017   12.1   0.1       0.96    6.3   0.0    2.3  2  TIGR01242 26Sp45: 26S proteasome subunit P45 family
      0.033   10.9   0.0      0.033   10.9   0.0    2.8  4  TIGR00634 recN: DNA repair protein RecN
      0.036   10.2   0.2        1.4    4.9   0.0    2.2  2  TIGR01243 CDC48: AAA family ATPase, CDC48 subfamily
      0.042   11.6   9.3        2.5    5.8   0.0    2.9  2  TIGR03499 FlhF: flagellar biosynthesis protein FlhF
      0.069    8.6   8.5       0.26    6.7   0.0    3.7  4  TIGR00606 rad50: rad50
       0.42    6.8   2.8          2    4.6   0.0    2.4  3  TIGR00763 lon: ATP-dependent protease La
       0.47    8.3   3.8       0.74    7.6   0.0    2.8  2  TIGR02173 cyt_kin_arch: putative cytidylate kinase


Domain annotation for each model (and alignments):
>> TIGR03719  ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  181.6   0.0   1.1e-55   5.2e-54      19     475 ..      23     486 .]      11     486 .] 0.83

  Alignments for each domain:
  == domain 1    score: 181.6 bits;  conditional E-value: 1.1e-55
   TIGR03719  19 eilkdislsffpgakiGvlGlnGaGkstllkimaGvdk...efeGealaaegikvGyleqePkldeektvrenveegvaeikealdrfeeisaklaee.dadfdklleeqaklqekidaadawdldskleiamdalrl..peedakveklsGGekrrvalcrlllekPdlllldePtnhldaesvaWlekflkeykGtvvavthdryfldnvaeWileldrGegipykgnysswleqkekrleqeekeeaarkkalkkeleWv.r...sspkarqakska.rlaryeel.aseese..kkeetaeivippgerlGdkvieven..lskafgdklliddlsfklpkggivGviGpnGaGkstlfklitgkekpdsGelkiGetvklayvdqs.rdalddnktvweeisdGldllklgkvevnsrayvgrfnfkGadqqkkvgelsGGernrvhlakllkeggnvllldePtndld 475
                 ++l  ++ + +p+ +  +lG+nGaGkstllk +a   +   + +G     +  +     q     +  +  +   +      +a +++e+ +a+     d ++++l    +  q + +aa++++++ +++ +++ l    +e d   +++sGG + r+ l+rlll++P+ll++dePtnhlda +  Wl  ++++y+Gtv+ v+     l +v++  lel + +       y ++l ++e+r ++   + +a++++ k+ ++++ r   +++ka qak++a +l++ e+  a++e+     +++ +++++p +  G + + +++  l+   g+  +i d ++++ kg  + + GpnGaGkstl+k ++ + +  sG+    e + l++  q   ++l +++   e ++  ++  + +  + ++r+ +g+++++G   ++ +g+lsGGe+ rv la    +  nvl+ldePtn ld
  MMETSP1137-20121227|6515_1  23 ALLLGVQWTVMPNERWALLGPNGAGKSTLLKAIAAAARgegSADGXLXXXSXXRXXXXXQXAXSGSXXSXXDXXXSXXXXXXAASAELEAATAACVSGaDCELERL----EAAQIAFAAAGGYEIEARVSRVLQGLGFdqAEFDRPCDSFSGGWQMRIGLARLLLSEPELLIMDEPTNHLDASARRWLGDYISSYAGTVLXVAAAANSLVEVTGGRLELYKST------TYPKYLAEREERQARARATVEAQQREAKRLQDFIdRmgaKASKASQAKDRAgKLSKLESQmAEAERLvvGARQRPKLTLAPPPSCGAVPVALRGacLRHPQGSVDIITDADLEVTKGMRLVLRGPNGAGKSTLVKALAATLELRSGDRFEDERLALGFFAQDlAQELPQEQLASEYVASVAQSHDASISDERCRSVLGALGLSGDKGRRIIGQLSGGEKARVALATFCLTPCNVLILDEPTNHLD 486
                 56677888889999999**************999875422267888999999999999999999999999999999999999999999988877655425565555....445567899****************98722456889********************************************************987666666666666665554......4778888888888887777777777777777777431114556777777765677776541333332114567789**********99887776226677788899****************************************************999726789999999999*99999999999999****************************************************98 PP

>> TIGR02857  CydD: thiol reductant ABC exporter, CydD subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.1   0.0   1.4e-07   6.7e-06     321     373 ..       9      60 ..       2      68 .. 0.85
   2 !   38.7   0.0   2.7e-12   1.3e-10     449     509 ..     158     218 ..     124     231 .. 0.79
   3 !   55.1   0.1   2.8e-17   1.4e-15     304     490 ..     313     486 .]     273     486 .] 0.76

  Alignments for each domain:
  == domain 1    score: 23.1 bits;  conditional E-value: 1.4e-07
   TIGR02857 321 slelenvsvayegrkpalkevsltvepgelvalvGaSGaGKstllklllgfve 373
                 +++++n ++   ++   l +v+ tv p e+ al+G+ GaGKstllk+++  ++
  MMETSP1137-20121227|6515_1   9 AISIRNFDLWAGDSA-LLLGVQWTVMPNERWALLGPNGAGKSTLLKAIAAAAR 60 
                 678888888887777.999****************************998775 PP

  == domain 2    score: 38.7 bits;  conditional E-value: 2.7e-12
   TIGR02857 449 eteiGergagLSgGqrqRlaLArallrdapllllDEPtahLDaeteaevlealrelaegrt 509
                 + e ++     SgG + R++LAr+ll++ +ll++DEPt hLDa++   + + + ++a +  
  MMETSP1137-20121227|6515_1 158 QAEFDRPCDSFSGGWQMRIGLARLLLSEPELLIMDEPTNHLDASARRWLGDYISSYAGTVL 218
                 45677888899*********************************99999999888765443 PP

  == domain 3    score: 55.1 bits;  conditional E-value: 2.8e-17
   TIGR02857 304 eeqpeaekapltaaassslelenvsvayegrk.palkevsltvepgelvalvGaSGaGKstllklllgfvepteGailvngaela.eldadswrkqiawvpQkPllfegtvaenirlarkdaseaevkealeragldelvkalpqgleteiGergagLSgGqrqRlaLArallrdapllllDEPtahLD 490
                 +++p+   ap ++  +  + l++  ++ +  + +++++ +l+v  g +++l G+ GaGKstl+k+l+ ++e  +G    +++ la  + a+++      +pQ+ +l ++ va   +  ++  s++  + +l + gl    k    g  + iG    +LSgG++ R+aLA   l ++++l+lDEPt hLD
  MMETSP1137-20121227|6515_1 313 RQRPKLTLAPPPSCGAVPVALRGACLRHPQGSvDIITDADLEVTKGMRLVLRGPNGAGKSTLVKALAATLELRSGDRF-EDERLAlGFFAQDLA---QELPQE-QLASEYVASVAQSHDASISDERCRSVLGALGLSG-DK----G-RRIIG----QLSGGEKARVALATFCLTPCNVLILDEPTNHLD 486
                 3334444444444444489999999999665559*************************************9999966.666555133334333...346776.6777888888888888888888888888888855.22....2.24677....5*******************************9 PP

>> TIGR03873  F420-0_ABC_ATP: proposed F420-0 ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.9   0.0   3.7e-07   1.8e-05      10      53 ..      18      61 ..      10      74 .. 0.84
   2 !   40.0   0.0   1.1e-12   5.5e-11     131     193 ..     161     223 ..     111     231 .. 0.84
   3 !   21.7   0.2   4.4e-07   2.1e-05       9      56 ..     340     387 ..     332     427 .. 0.88
   4 !   28.1   0.0     5e-09   2.4e-07     117     169 ..     433     486 .]     414     486 .] 0.76

  Alignments for each domain:
  == domain 1    score: 21.9 bits;  conditional E-value: 3.7e-07
   TIGR03873 10 raggrlivddvdvtaPaGaltgllGPnGsGkstllrllaGllap 53
                 ag   ++ +v+ t+ + +  +llGPnG+Gkstll+ +a + + 
  MMETSP1137-20121227|6515_1 18 WAGDSALLLGVQWTVMPNERWALLGPNGAGKSTLLKAIAAAARG 61
                567788899999999999999****************9987664 PP

  == domain 2    score: 40.0 bits;  conditional E-value: 1.1e-12
   TIGR03873 131 adrdlstlsGGerqrvhlaralaqePklllldePtnhldvsaqlellalvrelaaegvtvvva 193
                  dr ++ +sGG + r+ lar l  eP+ll++dePtnhld sa+  l   +++ a++   v +a
  MMETSP1137-20121227|6515_1 161 FDRPCDSFSGGWQMRIGLARLLLSEPELLIMDEPTNHLDASARRWLGDYISSYAGTVLXVAAA 223
                 48999*************************************988777777776665555555 PP

  == domain 3    score: 21.7 bits;  conditional E-value: 4.4e-07
   TIGR03873   9 vraggrlivddvdvtaPaGaltgllGPnGsGkstllrllaGllapdaG 56 
                   +g++ i++d d+++ +G    l GPnG+Gkstl++ la  l+   G
  MMETSP1137-20121227|6515_1 340 HPQGSVDIITDADLEVTKGMRLVLRGPNGAGKSTLVKALAATLELRSG 387
                 557999********************************9999887776 PP

  == domain 4    score: 28.1 bits;  conditional E-value: 5e-09
   TIGR03873 117 vvdralarvels.sladrdlstlsGGerqrvhlaralaqePklllldePtnhld 169
                   + +l++ +ls +   r +  lsGGe+ rv la       ++l+ldePtnhld
  MMETSP1137-20121227|6515_1 433 RCRSVLGALGLSgDKGRRIIGQLSGGEKARVALATFCLTPCNVLILDEPTNHLD 486
                 3445677777762445677899************98888889***********9 PP

>> TIGR01166  cbiO: cobalt ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   0.0   1.2e-06   5.8e-05       4      43 ..      21      60 ..      18      67 .. 0.86
   2 !   32.5   0.0   2.4e-10   1.2e-08     102     170 ..     141     210 ..     132     224 .. 0.90
   3 !   49.9   0.0   1.1e-15   5.3e-14       4     159 ..     344     486 .]     341     486 .] 0.77

  Alignments for each domain:
  == domain 1    score: 20.5 bits;  conditional E-value: 1.2e-06
   TIGR01166  4 eaevlkglnlavergevlallGanGaGkstlllhlnGllr 43
                ++  l g++ +v   e+ allG+nGaGkstll+ ++   r
  MMETSP1137-20121227|6515_1 21 DSALLLGVQWTVMPNERWALLGPNGAGKSTLLKAIAAAAR 60
                5667899999***********************9987655 PP

  == domain 2    score: 32.5 bits;  conditional E-value: 2.4e-10
   TIGR01166 102 aeverrvrealaavdisgle.erpthllsgGekkrvaiagavalrpdvllldePtagldpaGaeqlleil 170
                  e+e+rv+  l+ ++ ++ e +rp++ +sgG + r+ +a  +  +p++l++dePt  ld++ ++ l + +
  MMETSP1137-20121227|6515_1 141 YEIEARVSRVLQGLGFDQAEfDRPCDSFSGGWQMRIGLARLLLSEPELLIMDEPTNHLDASARRWLGDYI 210
                 589*************998769**************************************9988877666 PP

  == domain 3    score: 49.9 bits;  conditional E-value: 1.1e-15
   TIGR01166   4 eaevlkglnlavergevlallGanGaGkstlllhlnGllrPksGkvlldGe.eldysrkgllelrkkvalvlqdpddqlfaadvdedvafgplnlGlseaeverrvrealaavdisgle.erpthllsgGekkrvaiagavalrpdvllldePtagld 159
                  ++++++ +l+v++g +l+l G+nGaGkstl++ l+ +l  +sG    d + +l +  ++l +           p++ql +  v + va +  +  +s    ++r r  l a+++sg + +r + +lsgGek rva+a+      +vl+ldePt  ld
  MMETSP1137-20121227|6515_1 344 SVDIITDADLEVTKGMRLVLRGPNGAGKSTLVKALAATLELRSGDRFEDERlALGFFAQDLAQ---------ELPQEQLASEYVAS-VAQSH-DASIS----DERCRSVLGALGLSGDKgRRIIGQLSGGEKARVALATFCLTPCNVLILDEPTNHLD 486
                 678999**********************************99987555433245555555543.........23778877666654.55543.33333....45777788899998876256789*****************9************998 PP

>> TIGR03864  PQQ_ABC_ATP: ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.8   0.0   5.7e-08   2.8e-06       2      48 ..      10      56 ..       9      65 .. 0.88
   2 !   37.2   0.0   9.3e-12   4.6e-10     108     179 ..     142     214 ..     131     231 .. 0.88
   3 !   41.9   0.1   3.4e-13   1.7e-11       7     164 ..     338     486 .]     332     486 .] 0.79

  Alignments for each domain:
  == domain 1    score: 24.8 bits;  conditional E-value: 5.7e-08
   TIGR03864  2 leveglsfaygkrralddvsltvakgefvaLLGpnGaGkstLfsllt 48
                +++++ +   g+++ l +v+ tv + e  aLLGpnGaGkstL++ ++
  MMETSP1137-20121227|6515_1 10 ISIRNFDLWAGDSALLLGVQWTVMPNERWALLGPNGAGKSTLLKAIA 56
                6788888888999999**************************98776 PP

  == domain 2    score: 37.2 bits;  conditional E-value: 9.3e-12
   TIGR03864 108 eaeerieealarlglaeraeek.vreLnGGhrrrveiarallhePklLLlDeatvGLDiesraalveevrelv 179
                 e e+r++++l+ lg+ + + ++   + +GG + r+ +ar ll eP+lL++De+t  LD+++r+ l +++ + +
  MMETSP1137-20121227|6515_1 142 EIEARVSRVLQGLGFDQAEFDRpCDSFSGGWQMRIGLARLLLSEPELLIMDEPTNHLDASARRWLGDYISSYA 214
                 67899**********99887776999*************************************9999987765 PP

  == domain 3    score: 41.9 bits;  conditional E-value: 3.4e-13
   TIGR03864   7 lsfaygkrralddvsltvakgefvaLLGpnGaGkstLfslltrLyeakegeikvaGldlrrapkealarlGvvfqqstlDldlsveq.nlryhaaLhGls.raeaeerieealarlglaeraeek.vreLnGGhrrrveiarallhePklLLlDeatvGLD 164
                 l++  g+  ++ d +l+v+kg   +L GpnGaGkstL++ l+  +e ++g+       +++++   l  lG   q+  l  +l  eq   +y a++      + + er +++l  lgl+  +  + + +L+GG++ rv +a   l   ++L+lDe+t  LD
  MMETSP1137-20121227|6515_1 338 LRHPQGSVDIITDADLEVTKGMRLVLRGPNGAGKSTLVKALAATLELRSGD------RFEDER---L-ALGFFAQD--LAQELPQEQlASEYVASVAQSHdASISDERCRSVLGALGLSGDKGRRiIGQLSGGEKARVALATFCLTPCNVLILDEPTNHLD 486
                 66777899999******************************9999998875......333332...2.35655555..55556555524578888765440455789***********9766666489*****************************9988 PP

>> TIGR02868  CydC: thiol reductant ABC exporter, CydC subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.5   0.0   3.5e-07   1.7e-05     344     385 ..      18      59 ..       4      69 .. 0.89
   2 !   36.9   0.0   7.4e-12   3.6e-10     469     510 ..     165     206 ..     144     223 .. 0.88
   3 ?   -1.1   2.9       2.3   1.1e+02     180     240 ..     249     309 ..     208     315 .. 0.75
   4 !   27.0   0.5   7.4e-09   3.6e-07     330     391 ..     323     388 ..     287     402 .. 0.81
   5 !   30.3   0.0   7.6e-10   3.7e-08     471     503 ..     454     486 .]     445     486 .] 0.96

  Alignments for each domain:
  == domain 1    score: 21.5 bits;  conditional E-value: 3.5e-07
   TIGR02868 344 ypgaeevlkgvsldlepGervavvGasGaGKstLlallagll 385
                 + g+++ l gv+ ++ p er a++G+ GaGKstLl+++a + 
  MMETSP1137-20121227|6515_1  18 WAGDSALLLGVQWTVMPNERWALLGPNGAGKSTLLKAIAAAA 59 
                 8999999*****************************998765 PP

  == domain 2    score: 36.9 bits;  conditional E-value: 7.4e-12
   TIGR02868 469 garlSGGerqRlalARaLladapvllLDEPtehLDaeteeel 510
                   ++SGG + R+ lAR Ll++ ++l++DEPt hLDa +++ l
  MMETSP1137-20121227|6515_1 165 CDSFSGGWQMRIGLARLLLSEPELLIMDEPTNHLDASARRWL 206
                 5789********************************998755 PP

  == domain 3    score: -1.1 bits;  conditional E-value: 2.3
   TIGR02868 180 saeqalarlrselaaqlldllegaaelvvaGaleavlaqveeaereltraekraaaaealg 240
                 + e+++ar+r+ ++aq +++ + ++ +  +Ga++    q++++  +l ++e ++a+ae+l 
  MMETSP1137-20121227|6515_1 249 EREERQARARATVEAQQREAKRLQDFIDRMGAKASKASQAKDRAGKLSKLESQMAEAERLV 309
                 3456666777777777777777777777788888888888888888888888888887775 PP

  == domain 4    score: 27.0 bits;  conditional E-value: 7.4e-09
   TIGR02868 330 s...ekptlelrdlsvsypgaee.vlkgvsldlepGervavvGasGaGKstLlallaglldplkGe 391
                 +   +++ + lr+   ++p+++  ++++ +l++++G r+ + G+ GaGKstL+++la  l+ ++G+
  MMETSP1137-20121227|6515_1 323 PpscGAVPVALRGACLRHPQGSVdIITDADLEVTKGMRLVLRGPNGAGKSTLVKALAATLELRSGD 388
                 1334778999************99**********************************99999886 PP

  == domain 5    score: 30.3 bits;  conditional E-value: 7.6e-10
   TIGR02868 471 rlSGGerqRlalARaLladapvllLDEPtehLD 503
                 +lSGGe+ R+alA   l++ +vl+LDEPt hLD
  MMETSP1137-20121227|6515_1 454 QLSGGEKARVALATFCLTPCNVLILDEPTNHLD 486
                 69******************************9 PP

>> TIGR02673  FtsE: cell division ATP-binding protein FtsE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.0   9.7e-05    0.0047      13      53 ..      20      60 ..      10      68 .. 0.86
   2 !   42.0   0.0   3.7e-13   1.8e-11     110     202 ..     139     230 ..     129     239 .. 0.82
   3 ?   -1.3   0.2       6.1     3e+02     115     164 ..     268     324 ..     254     328 .. 0.63
   4 !   19.5   0.0   2.7e-06   0.00013      13      58 ..     343     388 ..     331     396 .. 0.90
   5 !   28.8   0.0     4e-09   1.9e-07     108     169 ..     424     486 .]     393     486 .] 0.85

  Alignments for each domain:
  == domain 1    score: 14.4 bits;  conditional E-value: 9.7e-05
   TIGR02673 13 agveaLkdvslkiekgeflfltGasGaGkttllklllgaek 53
                ++ + L  v+ ++ + e   l G+ GaGk+tllk + +a++
  MMETSP1137-20121227|6515_1 20 GDSALLLGVQWTVMPNERWALLGPNGAGKSTLLKAIAAAAR 60
                56677889999999*********************998765 PP

  == domain 2    score: 42.0 bits;  conditional E-value: 3.7e-13
   TIGR02673 110 keeeiqkrveevlelvgledkakalp.eelsgGeqqRvaiaRaivnkPelllaDePtGnlDdelserildllkelnkrGttvivathdeelver 202
                    ei+ rv++vl+ +g+++     p +++sgG q R+++aR ++++Pell+ DePt  lD++  + + d +++   +Gt + va+ +++lve 
  MMETSP1137-20121227|6515_1 139 GGYEIEARVSRVLQGLGFDQAEFDRPcDSFSGGWQMRIGLARLLLSEPELLIMDEPTNHLDASARRWLGDYISS--YAGTVLXVAAAANSLVEV 230
                 56789*************98776655389********************************9988877777664..467777788888888775 PP

  == domain 3    score: -1.3 bits;  conditional E-value: 6.1
   TIGR02673 115 qkrveevlelvgl....edkakalpeelsgGeqqRvaiaRaiv...nkPelllaDeP 164
                  kr ++ ++ +g     + +ak  + +ls+ e q     R +v   ++P+l la  P
  MMETSP1137-20121227|6515_1 268 AKRLQDFIDRMGAkaskASQAKDRAGKLSKLESQMAEAERLVVgarQRPKLTLAPPP 324
                 344444444444410004566777889999999999988988855457888887665 PP

  == domain 4    score: 19.5 bits;  conditional E-value: 2.7e-06
   TIGR02673  13 agveaLkdvslkiekgeflfltGasGaGkttllklllgaekpsrGe 58 
                 ++v++++d +l+++kg  l l G+ GaGk+tl+k l ++++  +G+
  MMETSP1137-20121227|6515_1 343 GSVDIITDADLEVTKGMRLVLRGPNGAGKSTLVKALAATLELRSGD 388
                 678999******************************9999988875 PP

  == domain 5    score: 28.8 bits;  conditional E-value: 4e-09
   TIGR02673 108 gkkeeeiqkrveevlelvgle.dkakalpeelsgGeqqRvaiaRaivnkPelllaDePtGnlD 169
                  ++++  ++r ++vl ++gl+ dk + +  +lsgGe+ Rva+a   ++  ++l+ DePt  lD
  MMETSP1137-20121227|6515_1 424 SHDASISDERCRSVLGALGLSgDKGRRIIGQLSGGEKARVALATFCLTPCNVLILDEPTNHLD 486
                 34455567899*********76899**********************************9998 PP

>> TIGR01188  drrA: daunorubicin resistance ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.0   3.7e-06   0.00018      10      41 ..      26      57 ..      19      66 .. 0.84
   2 !   41.1   0.0   5.5e-13   2.7e-11     100     174 ..     142     217 ..     134     308 .. 0.88
   3 !   22.7   0.0   2.2e-07   1.1e-05       7      48 ..     346     387 ..     342     391 .. 0.88
   4 !   22.9   0.0     2e-07   9.8e-06      98     156 ..     427     486 .]     394     486 .] 0.88

  Alignments for each domain:
  == domain 1    score: 18.7 bits;  conditional E-value: 3.7e-06
   TIGR01188 10 dgvnlkveegevfglLGPnGAGKtttikmLtt 41
                 gv+  v  +e ++lLGPnGAGK+t++k +++
  MMETSP1137-20121227|6515_1 26 LGVQWTVMPNERWALLGPNGAGKSTLLKAIAA 57
                589999999*****************998776 PP

  == domain 2    score: 41.1 bits;  conditional E-value: 5.5e-13
   TIGR01188 100 eaeeraeellelvelkeaa.dkkvktysgGmrrrlelaasliaqPevlfLDEPtiGLDprtrraiwdlieelkkeg 174
                 e+e+r++++l+ + + +a  d++   +sgG + r+ la+ l+++Pe+l +DEPt  LD+ +rr + d+i++   + 
  MMETSP1137-20121227|6515_1 142 EIEARVSRVLQGLGFDQAEfDRPCDSFSGGWQMRIGLARLLLSEPELLIMDEPTNHLDASARRWLGDYISSYAGTV 217
                 678999*******99987559************************************************9876654 PP

  == domain 3    score: 22.7 bits;  conditional E-value: 2.2e-07
   TIGR01188   7 kAvdgvnlkveegevfglLGPnGAGKtttikmLttllkPdsG 48 
                   + + +l+v++g  + l GPnGAGK+t++k L++ l+  sG
  MMETSP1137-20121227|6515_1 346 DIITDADLEVTKGMRLVLRGPNGAGKSTLVKALAATLELRSG 387
                 5678899***************************99988777 PP

  == domain 4    score: 22.9 bits;  conditional E-value: 2e-07
   TIGR01188  98 kkeaeeraeellelvelk.eaadkkvktysgGmrrrlelaasliaqPevlfLDEPtiGLD 156
                  ++ +er + +l  + l  ++ ++ ++++sgG + r+ la+  ++  +vl LDEPt  LD
  MMETSP1137-20121227|6515_1 427 ASISDERCRSVLGALGLSgDKGRRIIGQLSGGEKARVALATFCLTPCNVLILDEPTNHLD 486
                 4677899999*****9963788999*******************************9998 PP

>> TIGR01189  ccmA: heme ABC exporter, ATP-binding protein CcmA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0   2.9e-05    0.0014      11      49 ..      20      58 ..      10      71 .. 0.86
   2 !   36.2   0.0     2e-11   9.9e-10     107     176 ..     146     216 ..     116     235 .. 0.83
   3 !   48.5   0.0   3.6e-15   1.7e-13      11     159 ..     343     486 .]     333     486 .] 0.76

  Alignments for each domain:
  == domain 1    score: 16.1 bits;  conditional E-value: 2.9e-05
   TIGR01189 11 gervlleglsfelaaGealvveGpnGiGKttLLRilaGL 49
                g  +ll g++ ++ + e  ++ GpnG+GK+tLL+ +a  
  MMETSP1137-20121227|6515_1 20 GDSALLLGVQWTVMPNERWALLGPNGAGKSTLLKAIAAA 58
                67789999**************************99965 PP

  == domain 2    score: 36.2 bits;  conditional E-value: 2e-11
   TIGR01189 107 tveealekvgLsgle.dlpvaqLsAGqkrRlalarLllskaplWiLDEPttalDkegvellaellaaHlar 176
                  v+  l+ +g +++e d+p+ + s G + R++larLlls+  l i+DEPt  lD+++ + l + +++++ +
  MMETSP1137-20121227|6515_1 146 RVSRVLQGLGFDQAEfDRPCDSFSGGWQMRIGLARLLLSEPELLIMDEPTNHLDASARRWLGDYISSYAGT 216
                 67888888898887769******************************************999999887655 PP

  == domain 3    score: 48.5 bits;  conditional E-value: 3.6e-15
   TIGR01189  11 gervlleglsfelaaGealvveGpnGiGKttLLRilaGLlkpesGevelndkelaeqrdelaeellylgHldglKaeLsalEnLkfyaallq..seqktveealekvgLsgle.dlpvaqLsAGqkrRlalarLllskaplWiLDEPttalD 159
                 g   ++++ ++e++ G  lv++GpnG+GK+tL++ la  l+  sG  +++d+ la      a++l+       l +e  a E +   a+ ++   +++ +   l ++gLsg +  +++ qLs G k R+ala   l+   + iLDEPt  lD
  MMETSP1137-20121227|6515_1 343 GSVDIITDADLEVTKGMRLVLRGPNGAGKSTLVKALAATLELRSGD-RFEDERLALGF--FAQDLAQ-----ELPQEQLASEYVASVAQSHDasISDERCRSVLGALGLSGDKgRRIIGQLSGGEKARVALATFCLTPCNVLILDEPTNHLD 486
                 6677899999***********************************8.55545544333..4444443.....3444444455555444444422233469999******986626799******************************9998 PP

>> TIGR03265  PhnT2: putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.0   2.4e-06   0.00012       5      52 ..      10      57 ..       7      67 .. 0.87
   2 !   36.1   0.0   1.8e-11     9e-10     110     174 ..     142     207 ..     133     217 .. 0.90
   3 !   17.4   0.0   9.1e-06   0.00045      15      59 ..     343     387 ..     333     397 .. 0.83
   4 !   27.3   0.0   8.9e-09   4.3e-07     106     166 ..     425     486 .]     415     486 .] 0.87

  Alignments for each domain:
  == domain 1    score: 19.3 bits;  conditional E-value: 2.4e-06
   TIGR03265  5 lsieeiekefeaftalkdislsvkkgelvclLGPsGCGkttLLriiaG 52
                +si++ +   ++ + l  ++ +v+ +e  +lLGP G Gk+tLL++ia 
  MMETSP1137-20121227|6515_1 10 ISIRNFDLWAGDSALLLGVQWTVMPNERWALLGPNGAGKSTLLKAIAA 57
                667777777788889999****************************96 PP

  == domain 2    score: 36.1 bits;  conditional E-value: 1.8e-11
   TIGR03265 110 evaerveelLelvglsgseekyPg.qlsGGqqqrvaLaralalsPglLLLDePlsaLDakvrekLr 174
                 e+++rv+++L+ +g++++e   P   +sGG q r+ Lar l   P+lL++DeP   LDa  r  L 
  MMETSP1137-20121227|6515_1 142 EIEARVSRVLQGLGFDQAEFDRPCdSFSGGWQMRIGLARLLLSEPELLIMDEPTNHLDASARRWLG 207
                 7899**************998886269**********************************98876 PP

  == domain 3    score: 17.4 bits;  conditional E-value: 9.1e-06
   TIGR03265  15 eaftalkdislsvkkgelvclLGPsGCGkttLLriiaGLekqdaG 59 
                 +++ +++d +l+v+kg  + l GP G Gk+tL++++a   +  +G
  MMETSP1137-20121227|6515_1 343 GSVDIITDADLEVTKGMRLVLRGPNGAGKSTLVKALAATLELRSG 387
                 677899*****************************9865444455 PP

  == domain 4    score: 27.3 bits;  conditional E-value: 8.9e-09
   TIGR03265 106 lkreevaerveelLelvglsgs.eekyPgqlsGGqqqrvaLaralalsPglLLLDePlsaLD 166
                  + +  +er +++L  +glsg  +++  gqlsGG + rvaLa    +  ++L+LDeP   LD
  MMETSP1137-20121227|6515_1 425 HDASISDERCRSVLGALGLSGDkGRRIIGQLSGGEKARVALATFCLTPCNVLILDEPTNHLD 486
                 456667899**********976158899***************999999********99887 PP

>> TIGR03608  L_ocin_972_ABC: putative bacteriocin export ABC transporter, lactococcin 972 group
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.7   0.0   0.00059     0.029      10      47 ..      21      58 ..      12      71 .. 0.82
   2 !   34.8   0.0   5.1e-11   2.5e-09     110     175 ..     142     208 ..     130     228 .. 0.87
   3 !   47.3   0.0   7.2e-15   3.5e-13      11     166 ..     345     486 .]     338     486 .] 0.81

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 0.00059
   TIGR03608 10 dkeilkklslkiekGelvaivGesGsGKstlLnilgll 47
                d ++l  ++ ++   e  a++G  G+GKstlL  ++  
  MMETSP1137-20121227|6515_1 21 DSALLLGVQWTVMPNERWALLGPNGAGKSTLLKAIAAA 58
                556677778888888999***************99865 PP

  == domain 2    score: 34.8 bits;  conditional E-value: 5.1e-11
   TIGR03608 110 ekekkkkevlekvgl.ekklkkkiyelsgGekqRvalarillkeselilADEPtgsLDkknreevle 175
                 e e ++ +vl+ +g+ +++ ++   ++sgG + R+ lar+ll e+el++ DEPt  LD+  r  + +
  MMETSP1137-20121227|6515_1 142 EIEARVSRVLQGLGFdQAEFDRPCDSFSGGWQMRIGLARLLLSEPELLIMDEPTNHLDASARRWLGD 208
                 556778899999999777889999***********************************99877655 PP

  == domain 3    score: 47.3 bits;  conditional E-value: 7.2e-15
   TIGR03608  11 keilkklslkiekGelvaivGesGsGKstlLnilgllekkdsgkvilegkekaklkskkaskllreklgylFqnfaL.lenetveenlelalklkkkskkekekkkkevlekvglekkl.kkkiyelsgGekqRvalarillkeselilADEPtgsLD 166
                   i+++ +l++ kG+ + + G  G+GKstl+  l+   +  sg+ + +                r  lg+  q+ a  l +e + +   +a + + +  +  +++  +vl ++gl+ ++ ++ i +lsgGek Rvala   l+++++++ DEPt  LD
  MMETSP1137-20121227|6515_1 345 VDIITDADLEVTKGMRLVLRGPNGAGKSTLVKALAATLELRSGDRFED---------------ERLALGFFAQDLAQeLPQEQLASEY-VASVAQSHDASISDERCRSVLGALGLSGDKgRRIIGQLSGGEKARVALATFCLTPCNVLILDEPTNHLD 486
                 57999****************************998877777764432...............2457889889876325566665554.45556666778889999*********66551666789*****************************999 PP

>> TIGR03740  galliderm_ABC: lantibiotic protection ABC transporter, ATP-binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.0   1.7e-06   8.5e-05      16      48 ..      25      57 ..      12      68 .. 0.85
   2 !   34.6   0.0   6.6e-11   3.2e-09     103     187 ..     145     230 ..     132     233 .. 0.88
   3 !   43.1   0.0   1.7e-13   8.4e-12      14     156 ..     346     486 .]     337     486 .] 0.79

  Alignments for each domain:
  == domain 1    score: 20.1 bits;  conditional E-value: 1.7e-06
   TIGR03740 16 vnnvslkvkknsvygllGpnGaGkstllklltG 48
                +  v+ +v  n+ ++llGpnGaGkstllk ++ 
  MMETSP1137-20121227|6515_1 25 LLGVQWTVMPNERWALLGPNGAGKSTLLKAIAA 57
                5667889999999****************9975 PP

  == domain 2    score: 34.6 bits;  conditional E-value: 6.6e-11
   TIGR03740 103 srieevlkivdlente.kkkakqfslGmkqrlGiaiallnkPkllildePtnGldPlGiqelreliksfpekGitvilsshilsev 187
                 +r++ vl+ +++++ e  + ++ fs G + r+G+a  ll +P+lli+dePtn ld    + l + i s+    + v  ++  l ev
  MMETSP1137-20121227|6515_1 145 ARVSRVLQGLGFDQAEfDRPCDSFSGGWQMRIGLARLLLSEPELLIMDEPTNHLDASARRWLGDYISSYAGTVLXVAAAANSLVEV 230
                 6888999999998765278899**************************************9***9999998888888777777776 PP

  == domain 3    score: 43.1 bits;  conditional E-value: 1.7e-13
   TIGR03740  14 avvnnvslkvkknsvygllGpnGaGkstllklltGllrktsGeilldgrewtrkdlkkiGsliesPalyenltarenlkv.rtlllglpesrieevlkivdlente.kkkakqfslGmkqrlGiaiallnkPkllildePtnGld 156
                 +++ + +l+v k     l GpnGaGkstl+k l+  l+  sG+   d+r       +++   +      e+l+++    v ++   +++++r  +vl  ++l+ ++ ++  +q+s G k r+ +a   l   ++lildePtn ld
  MMETSP1137-20121227|6515_1 346 DIITDADLEVTKGMRLVLRGPNGAGKSTLVKALAATLELRSGDRFEDERLALGFFAQDLAQELP----QEQLASEYVASVaQSHDASISDERCRSVLGALGLSGDKgRRIIGQLSGGEKARVALATFCLTPCNVLILDEPTNHLD 486
                 6889999***********************************9765554443333444433222....34554444444414566799**************8665166789******************************998 PP

>> TIGR00960  3a0501s02: type II secretory pathway family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.9   0.0   0.00062      0.03      19      54 ..      25      60 ..      16      68 .. 0.83
   2 !   39.3   0.0   2.6e-12   1.3e-10     110     206 ..     138     233 ..     128     240 .. 0.85
   3 !   12.9   0.0   0.00031     0.015      18      58 ..     347     387 ..     331     396 .. 0.82
   4 !   25.1   0.0   5.8e-08   2.8e-06     115     170 ..     430     486 .]     394     486 .] 0.87

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 0.00062
   TIGR00960 19 ldnvtvkiekGelvflvGhsGaGkstllklilgiek 54
                l +v+  +   e   l G+ GaGkstllk i ++++
  MMETSP1137-20121227|6515_1 25 LLGVQWTVMPNERWALLGPNGAGKSTLLKAIAAAAR 60
                567888888888899***************998876 PP

  == domain 2    score: 39.3 bits;  conditional E-value: 2.6e-12
   TIGR00960 110 vkgreieervsaalekvGlkdkakalPv.qlsgGeqqrvaiaravvnkPallladePtgnlddelsrdilelleevnraGttvlvathdenlveskrk 206
                 + g eie rvs +l+ +G+ + + + P   +sgG q r+++ar ++++P+ll+ dePt  ld    r + + + +   aGt + va+ +++lve ++ 
  MMETSP1137-20121227|6515_1 138 AGGYEIEARVSRVLQGLGFDQAEFDRPCdSFSGGWQMRIGLARLLLSEPELLIMDEPTNHLDASARRWLGDYISS--YAGTVLXVAAAANSLVEVTGG 233
                 557899******************9996269*******************************9988887777765..468888889999999887655 PP

  == domain 3    score: 12.9 bits;  conditional E-value: 0.00031
   TIGR00960  18 aldnvtvkiekGelvflvGhsGaGkstllklilgiekpsaG 58 
                  + +  ++++kG    l G+ GaGkstl+k + ++ +  +G
  MMETSP1137-20121227|6515_1 347 IITDADLEVTKGMRLVLRGPNGAGKSTLVKALAATLELRSG 387
                 67788999**********************99887666666 PP

  == domain 4    score: 25.1 bits;  conditional E-value: 5.8e-08
   TIGR00960 115 ieervsaalekvGlkd.kakalPvqlsgGeqqrvaiaravvnkPallladePtgnld 170
                  +er + +l  +Gl++ k +++  qlsgGe+ rva+a   +   ++l+ dePt  ld
  MMETSP1137-20121227|6515_1 430 SDERCRSVLGALGLSGdKGRRIIGQLSGGEKARVALATFCLTPCNVLILDEPTNHLD 486
                 468999********9627788999******************************998 PP

>> TIGR02315  ABC_phnC: phosphonate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.0   9.8e-06   0.00048      11      50 ..      18      57 ..      10      69 .. 0.87
   2 !   31.7   0.0   4.3e-10   2.1e-08     127     182 ..     148     204 ..     132     215 .. 0.85
   3 !   19.4   0.0   2.4e-06   0.00012      15      60 ..     345     390 ..     338     397 .. 0.87
   4 !   19.4   0.0   2.4e-06   0.00012     124     177 ..     432     486 .]     409     486 .] 0.85

  Alignments for each domain:
  == domain 1    score: 17.5 bits;  conditional E-value: 9.8e-06
   TIGR02315 11 ypngkqalknvnleikkGelvaviGlsGaGkstllrsinr 50
                ++++++ l  v+ ++ + e  a++G+ GaGkstll++i  
  MMETSP1137-20121227|6515_1 18 WAGDSALLLGVQWTVMPNERWALLGPNGAGKSTLLKAIAA 57
                67788889999*************************9975 PP

  == domain 2    score: 31.7 bits;  conditional E-value: 4.3e-10
   TIGR02315 127 lelLervglaelaakr.adqLsGGqqqRvaiaRalaqqpklilaDEPiasLDpkssk 182
                  ++L+ +g+++    r +d+ sGG q R+++aR l+ +p+l++ DEP+  LD ++ +
  MMETSP1137-20121227|6515_1 148 SRVLQGLGFDQAEFDRpCDSFSGGWQMRIGLARLLLSEPELLIMDEPTNHLDASARR 204
                 567888888877766659**********************************87655 PP

  == domain 3    score: 19.4 bits;  conditional E-value: 2.4e-06
   TIGR02315  15 kqalknvnleikkGelvaviGlsGaGkstllrsinrlveissgsil 60 
                   ++ + +le++kG  +++ G+ GaGkstl++++    e  sg+ +
  MMETSP1137-20121227|6515_1 345 VDIITDADLEVTKGMRLVLRGPNGAGKSTLVKALAATLELRSGDRF 390
                 567899****************************999888888755 PP

  == domain 4    score: 19.4 bits;  conditional E-value: 2.4e-06
   TIGR02315 124 ekAlelLervglaelaakr.adqLsGGqqqRvaiaRalaqqpklilaDEPiasLD 177
                 e+  ++L  +gl+  + +r   qLsGG++ Rva+a   +   ++++ DEP+  LD
  MMETSP1137-20121227|6515_1 432 ERCRSVLGALGLSGDKGRRiIGQLSGGEKARVALATFCLTPCNVLILDEPTNHLD 486
                 5667888899999877777358**************99999**********9998 PP

>> TIGR03410  urea_trans_UrtE: urea ABC transporter, ATP-binding protein UrtE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.2   0.0   8.4e-08   4.1e-06       2      50 ..      11      59 ..      10      69 .. 0.90
   2 !   23.6   0.0   1.4e-07   6.6e-06     126     165 ..     162     201 ..     132     215 .. 0.88
   3 !   36.3   0.0   1.8e-11   8.7e-10      11     160 ..     343     483 ..     336     486 .] 0.81

  Alignments for each domain:
  == domain 1    score: 24.2 bits;  conditional E-value: 8.4e-08
   TIGR03410  2 evenlevaYgesevlrdvslevekgevvavlGrngvGkttllkalvgll 50
                +++n ++  g+s +l +v+ +v  +e  a+lG ng+Gk+tllka+ +  
  MMETSP1137-20121227|6515_1 11 SIRNFDLWAGDSALLLGVQWTVMPNERWALLGPNGAGKSTLLKAIAAAA 59
                578888899***********************************98765 PP

  == domain 2    score: 23.6 bits;  conditional E-value: 1.4e-07
   TIGR03410 126 kRrgGdLsGGqqqqlaiaRaLvtePklllLDePteGiqPs 165
                 +R     sGG q  + +aR L++eP+ll++DePt+ +  s
  MMETSP1137-20121227|6515_1 162 DRPCDSFSGGWQMRIGLARLLLSEPELLIMDEPTNHLDAS 201
                 6888899***************************877655 PP

  == domain 3    score: 36.3 bits;  conditional E-value: 1.8e-11
   TIGR03410  11 gesevlrdvslevekgevvavlGrngvGkttllkalvgllkvksGeielegeditklkpeervkaGiayvpqGreifpkltveenlelglealkkk.ekkipeeiyelFPvlkemlkRrgGdLsGGqqqqlaiaRaLvtePklllLDePte 160
                 g+  +++d +lev+kg  +++ G ng+Gk+tl+kal ++l+ +sG  ++e+e +      +  ++     pq +        +e +  ++++++++ + +   +++    +  +  +R  G+LsGG +  +a+a   +t  ++l+LDePt+
  MMETSP1137-20121227|6515_1 343 GSVDIITDADLEVTKGMRLVLRGPNGAGKSTLVKALAATLELRSGD-RFEDERLALGFFAQDLAQE---LPQEQ------LASEYVASVAQSHDASiSDERCRSVLGALGLSGDKGRRIIGQLSGGEKARVALATFCLTPCNVLILDEPTN 483
                 67789****************************************8.5666665543333333332...45543......3456666666666655578888999999999999999********************************97 PP

>> TIGR00968  3a0106s01: sulfate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.0   7.6e-06   0.00037       3      49 ..      12      58 ..      10      68 .. 0.83
   2 !   29.3   0.0   2.5e-09   1.2e-07     106     173 ..     142     210 ..     132     226 .. 0.87
   3 !   39.9   0.0   1.5e-12   7.2e-11      11     162 ..     343     486 .]     338     486 .] 0.82

  Alignments for each domain:
  == domain 1    score: 17.9 bits;  conditional E-value: 7.6e-06
   TIGR00968  3 ianvskrfGdfqalddvdlevktGslvallGpsGsGkstllrviaGl 49
                i n     Gd   l  v+ +v   +  allGp G+Gkstll++ia  
  MMETSP1137-20121227|6515_1 12 IRNFDLWAGDSALLLGVQWTVMPNERWALLGPNGAGKSTLLKAIAAA 58
                556666668888888999999999999*****************975 PP

  == domain 2    score: 29.3 bits;  conditional E-value: 2.5e-09
   TIGR00968 106 kikakveellelvqleklg.drypsqlsGGqrqrvalaralavepqvllldepfgaldakvrkelrawl 173
                 +i a+v+++l+ +++++ + dr  + +sGG + r+ lar l  ep++l++dep   lda  r+ l  ++
  MMETSP1137-20121227|6515_1 142 EIEARVSRVLQGLGFDQAEfDRPCDSFSGGWQMRIGLARLLLSEPELLIMDEPTNHLDASARRWLGDYI 210
                 688999999999999887636667889*********************************998776655 PP

  == domain 3    score: 39.9 bits;  conditional E-value: 1.5e-12
   TIGR00968  11 GdfqalddvdlevktGslvallGpsGsGkstllrviaGlekpdsGrilleGrdvtrvkvrdreiGfvfqhya..lfkhltvrdniafGleirkkdkakikakveellelvqlek.lgdrypsqlsGGqrqrvalaralavepqvllldepfgald 162
                 G++ ++ d dlev +G    l Gp G+Gkstl++++a   +  sG          r + ++  +Gf  q+ a  l +    ++ +a     + +d+    ++   +l  ++l++  g r   qlsGG++ rvala       +vl+ldep   ld
  MMETSP1137-20121227|6515_1 343 GSVDIITDADLEVTKGMRLVLRGPNGAGKSTLVKALAATLELRSG---------DRFEDERLALGFFAQDLAqeLPQEQLASEYVAS--VAQSHDASISDERCRSVLGALGLSGdKGRRIIGQLSGGEKARVALATFCLTPCNVLILDEPTNHLD 486
                 89999*******************************975555555.........4677788899*****998323344445555553..345778888899***********972567899**************9998899********99887 PP

>> TIGR03522  GldA_ABC_ATP: gliding motility-associated ABC transporter ATP-binding subunit GldA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   5.3e-05    0.0026      19      50 ..      26      57 ..      10      67 .. 0.81
   2 !   29.4   0.0   2.4e-09   1.2e-07     109     166 ..     142     200 ..     131     208 .. 0.87
   3 !   43.0   0.0   1.7e-13   8.1e-12      18     165 ..     348     486 .]     338     486 .] 0.85

  Alignments for each domain:
  == domain 1    score: 15.1 bits;  conditional E-value: 5.3e-05
   TIGR03522 19 devsfeaekGeivGflGPnGaGkstlmkiltg 50
                  v +++ + e   +lGPnGaGkstl+k +++
  MMETSP1137-20121227|6515_1 26 LGVQWTVMPNERWALLGPNGAGKSTLLKAIAA 57
                567777888888899*************9876 PP

  == domain 2    score: 29.4 bits;  conditional E-value: 2.4e-09
   TIGR03522 109 klkkrveelielvGlkaeqh.kkigalskGyrqrvGlakallhdPkvlildePttGldP 166
                 +++ rv ++++  G+ + ++ +  + +s G++ r+Gla+ ll +P++li+dePt  ld 
  MMETSP1137-20121227|6515_1 142 EIEARVSRVLQGLGFDQAEFdRPCDSFSGGWQMRIGLARLLLSEPELLIMDEPTNHLDA 200
                 4568999*******977655166899******************************996 PP

  == domain 3    score: 43.0 bits;  conditional E-value: 1.7e-13
   TIGR03522  18 ldevsfeaekGeivGflGPnGaGkstlmkiltgylkadsGsvavagedvlknslevrkniGylPehnPlyldlyvreylefsaalyklkgrklkkrveelielvGlkaeqhkk.igalskGyrqrvGlakallhdPkvlildePttGld 165
                 + +  +e+ kG  + + GPnGaGkstl+k l++ l+  sG  + ++   l     ++     lP+      +    ey++  a+ ++ +    ++r + ++   Gl+ ++ ++ ig+ls G + rv la   l   +vlildePt  ld
  MMETSP1137-20121227|6515_1 348 ITDADLEVTKGMRLVLRGPNGAGKSTLVKALAATLELRSGDRFEDER--LALGFFAQDLAQELPQ------EQLASEYVASVAQSHDAS--ISDERCRSVLGALGLSGDKGRRiIGQLSGGEKARVALATFCLTPCNVLILDEPTNHLD 486
                 556678999999999*************************8765554..4445566666666665......667899**9999999988..899*************99876637******************************9998 PP

>> TIGR03375  type_I_sec_LssB: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.0     6e-06   0.00029     482     516 ..      24      58 ..      10      67 .. 0.86
   2 !   31.8   0.0     2e-10   9.7e-09     602     646 ..     166     210 ..     147     230 .. 0.85
   3 !   16.7   0.0   7.7e-06   0.00037     467     523 ..     332     388 ..     281     437 .. 0.92
   4 !   21.2   0.0   3.3e-07   1.6e-05     603     635 ..     454     486 .]     445     486 .] 0.95

  Alignments for each domain:
  == domain 1    score: 17.0 bits;  conditional E-value: 6e-06
   TIGR03375 482 aLknvslkikpGekvaiiGriGsGKstllklllgl 516
                  L  v+ ++ p e+ a++G +G+GKstllk ++  
  MMETSP1137-20121227|6515_1  24 LLLGVQWTVMPNERWALLGPNGAGKSTLLKAIAAA 58 
                 56778999**********************99875 PP

  == domain 2    score: 31.8 bits;  conditional E-value: 2e-10
   TIGR03375 602 esLSgGQrqavalaRallkdppillLDEPtsalDnsseekllerL 646
                 +s+SgG +  ++laR+ll++p++l++DEPt++lD+s+ + l + +
  MMETSP1137-20121227|6515_1 166 DSFSGGWQMRIGLARLLLSEPELLIMDEPTNHLDASARRWLGDYI 210
                 689*******************************99877666555 PP

  == domain 3    score: 16.7 bits;  conditional E-value: 7.7e-06
   TIGR03375 467 elknvsfkYpeeekaaLknvslkikpGekvaiiGriGsGKstllklllglyepteGs 523
                 +l+   +++p+ +   + +  l++  G ++ + G +G+GKstl k l+  +e ++G 
  MMETSP1137-20121227|6515_1 332 ALRGACLRHPQGSVDIITDADLEVTKGMRLVLRGPNGAGKSTLVKALAATLELRSGD 388
                 566677788999999999******************************999999885 PP

  == domain 4    score: 21.2 bits;  conditional E-value: 3.3e-07
   TIGR03375 603 sLSgGQrqavalaRallkdppillLDEPtsalD 635
                 +LSgG +  vala   l+  ++l+LDEPt++lD
  MMETSP1137-20121227|6515_1 454 QLSGGEKARVALATFCLTPCNVLILDEPTNHLD 486
                 7******************************99 PP

>> TIGR02142  modC_ABC: molybdate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   0.0   0.00014    0.0067      13      48 ..      25      60 ..      14      73 .. 0.86
   2 !   38.5   0.0   3.4e-12   1.7e-10     109     173 ..     144     209 ..     134     218 .. 0.86
   3 !   29.4   0.1   2.1e-09     1e-07      28     163 ..     363     486 .]     337     486 .] 0.63

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 0.00014
   TIGR02142 13 eLdvdlelpgkgvtalFGrsGsGktslirliaGLtr 48
                 L v+ ++  +++ al G  G+Gk++l+++ia   r
  MMETSP1137-20121227|6515_1 25 LLGVQWTVMPNERWALLGPNGAGKSTLLKAIAAAAR 60
                47789999999********************98766 PP

  == domain 2    score: 38.5 bits;  conditional E-value: 3.4e-12
   TIGR02142 109 riseekvielLgiehL.leRlpgkLsGGekqRvaigRAlLssPeLLlmDePLaaLDekrkkeilPy 173
                 +++  +v++ Lg ++   +R   + sGG + R++++R lLs+PeLL+mDeP   LD + ++ +  y
  MMETSP1137-20121227|6515_1 144 EARVSRVLQGLGFDQAeFDRPCDSFSGGWQMRIGLARLLLSEPELLIMDEPTNHLDASARRWLGDY 209
                 5677889999999875489**************************************999866555 PP

  == domain 3    score: 29.4 bits;  conditional E-value: 2.1e-09
   TIGR02142  28 lFGrsGsGktslirliaGLtrpdegeivldgevlqdsrkkiilppekRrvgyvFqe.ArLFpHlsvrenLrYGlkraraeerriseekvielLgiehLl....eRlpgkLsGGekqRvaigRAlLssPeLLlmDePLaaLD 163
                 l G  G+Gk++l++++a  + +++g             +      e+ ++g+  q+ A+  p  + ++  +Y  + a++++  is+e+  ++Lg   L     +R  g+LsGGek Rva++   L+  ++L++DeP   LD
  MMETSP1137-20121227|6515_1 363 LRGPNGAGKSTLVKALAATLELRSGD------------R---FEDERLALGFFAQDlAQELPQEQLAS--EYVASVAQSHDASISDERCRSVLGALGLSgdkgRRIIGQLSGGEKARVALATFCLTPCNVLILDEPTNHLD 486
                 55666666666665555444333332............1...23344455555555444455555444..4556666666667888776666654444322227899*****************************99988 PP

>> TIGR02324  CP_lyasePhnL: phosphonate C-P lyase system protein PhnL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0   2.4e-05    0.0012      25      60 ..      26      61 ..      20      68 .. 0.87
   2 !   25.7   0.0   3.1e-08   1.5e-06     126     187 ..     144     205 ..     128     218 .. 0.85
   3 !   23.6   0.0   1.3e-07   6.6e-06      14      64 ..     340     388 ..     332     414 .. 0.87
   4 !   18.2   0.0   5.9e-06   0.00029     149     181 ..     454     486 .]     393     486 .] 0.83

  Alignments for each domain:
  == domain 1    score: 16.2 bits;  conditional E-value: 2.4e-05
   TIGR02324 25 kevsleveaGelvalsGksGaGkstllkslyanYlp 60
                  v+ +v   e  al G+ GaGkstllk++ a  + 
  MMETSP1137-20121227|6515_1 26 LGVQWTVMPNERWALLGPNGAGKSTLLKAIAAAARG 61
                5789999**********************9887665 PP

  == domain 2    score: 25.7 bits;  conditional E-value: 3.1e-08
   TIGR02324 126 rakakellarlniperLWslaPatfsGGekqRvniaraliadrPiLLLdePtasLdaanrkv 187
                 +a+++++l+ l   +  +  +   fsGG + R+ +ar l+++  +L++dePt  Lda+ r+ 
  MMETSP1137-20121227|6515_1 144 EARVSRVLQGLGFDQAEFDRPCDSFSGGWQMRIGLARLLLSEPELLIMDEPTNHLDASARRW 205
                 56788888888888888999999******************6667779*********99875 PP

  == domain 3    score: 23.6 bits;  conditional E-value: 1.3e-07
   TIGR02324  14 hqqgGvklpvlkevsleveaGelvalsGksGaGkstllkslyanYlpesgr 64 
                 h qg  +++++++ +lev++G  ++l G+ GaGkstl+k+l a+    sg 
  MMETSP1137-20121227|6515_1 340 HPQG--SVDIITDADLEVTKGMRLVLRGPNGAGKSTLVKALAATLELRSGD 388
                 5554..567899*****************************9999888875 PP

  == domain 4    score: 18.2 bits;  conditional E-value: 5.9e-06
   TIGR02324 149 tfsGGekqRvniaraliadrPiLLLdePtasLd 181
                   sGGek Rv +a   +++  +L+LdePt  Ld
  MMETSP1137-20121227|6515_1 454 QLSGGEKARVALATFCLTPCNVLILDEPTNHLD 486
                 68***************************9986 PP

>> TIGR00972  3a0107s01c2: phosphate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   0.0   1.1e-06   5.4e-05       2      47 ..      10      55 ..       9      61 .. 0.95
   2 !   31.0   0.0   6.9e-10   3.4e-08     136     188 ..     159     211 ..     138     227 .. 0.80
   3 !   13.9   0.0   0.00011    0.0056      14      60 ..     345     391 ..     337     428 .. 0.85
   4 !   14.9   0.0   5.7e-05    0.0028     143     176 ..     453     486 .]     417     486 .] 0.86

  Alignments for each domain:
  == domain 1    score: 20.5 bits;  conditional E-value: 1.1e-06
   TIGR00972  2 levknlklfygekealkdvnleikknkvtaliGpsGcGkstllrsl 47
                ++++n++l+ g+   l  v+  ++ n+  al+Gp G+Gkstll+++
  MMETSP1137-20121227|6515_1 10 ISIRNFDLWAGDSALLLGVQWTVMPNERWALLGPNGAGKSTLLKAI 55
                789*****************************************98 PP

  == domain 2    score: 31.0 bits;  conditional E-value: 6.9e-10
   TIGR00972 136 dklkksalsLsGGqqqrlciaralavePevlLlDePtsaLDpiatekieeliq 188
                  + ++   s sGG q r+ +ar l  ePe+l++DePt  LD+ a + + + i+
  MMETSP1137-20121227|6515_1 159 AEFDRPCDSFSGGWQMRIGLARLLLSEPELLIMDEPTNHLDASARRWLGDYIS 211
                 456777889********************************999877766665 PP

  == domain 3    score: 13.9 bits;  conditional E-value: 0.00011
   TIGR00972  14 kealkdvnleikknkvtaliGpsGcGkstllrslnrlndlveevrie 60 
                    ++d +le++k +  +l Gp G+Gkstl+++l    +l ++ r+e
  MMETSP1137-20121227|6515_1 345 VDIITDADLEVTKGMRLVLRGPNGAGKSTLVKALAATLELRSGDRFE 391
                 5678999***************************9988888777766 PP

  == domain 4    score: 14.9 bits;  conditional E-value: 5.7e-05
   TIGR00972 143 lsLsGGqqqrlciaralavePevlLlDePtsaLD 176
                  +LsGG + r+++a    +  +vl+lDePt  LD
  MMETSP1137-20121227|6515_1 453 GQLSGGEKARVALATFCLTPCNVLILDEPTNHLD 486
                 58************9999999*********9998 PP

>> TIGR02982  heterocyst_DevA: ABC exporter ATP-binding subunit, DevA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.0   0.0    0.0011     0.051      19      53 ..      23      57 ..       9      68 .. 0.84
   2 !   30.4   0.0   1.2e-09   5.7e-08     117     180 ..     142     206 ..     131     232 .. 0.87
   3 !   31.5   0.0   5.7e-10   2.8e-08      19     173 ..     346     486 .]     338     486 .] 0.80

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 0.0011
   TIGR02982 19 qvlfdinleiepgeiviltGpsGsGkttlltligg 53
                 +l  ++ +++p+e   l Gp G+Gk tll  i++
  MMETSP1137-20121227|6515_1 23 ALLLGVQWTVMPNERWALLGPNGAGKSTLLKAIAA 57
                4788999***********************99986 PP

  == domain 2    score: 30.4 bits;  conditional E-value: 1.2e-09
   TIGR02982 117 eakakaeelleavglee.rldykpedlsgGqkqrvaiaralvarPklvladePtaaldkksgrev 180
                 e +a+++ +l+ +g+++ ++d+  + +sgG + r+ +ar l ++P+l++ dePt  ld+++ r +
  MMETSP1137-20121227|6515_1 142 EIEARVSRVLQGLGFDQaEFDRPCDSFSGGWQMRIGLARLLLSEPELLIMDEPTNHLDASARRWL 206
                 5667888999999998757899999*********************************9987765 PP

  == domain 3    score: 31.5 bits;  conditional E-value: 5.7e-10
   TIGR02982  19 qvlfdinleiepgeiviltGpsGsGkttlltligglrsvqeGelkvlgkelkgasekelvqvrrkiGyifqahnllesltaeqnv.rmalelkeklsakeakakaeelleavgl.eerldykpedlsgGqkqrvaiaralvarPklvladePtaald 173
                  ++ d +le+++g  ++l Gp G+Gk tl+  +++  ++++G+              +  + r  +G+  q  +l + l  eq   +  + ++++  a+ + ++++++l a+gl +++  +   +lsgG k rva+a    +  ++++ dePt  ld
  MMETSP1137-20121227|6515_1 346 DIITDADLEVTKGMRLVLRGPNGAGKSTLVKALAATLELRSGD--------------RFEDERLALGFFAQ--DLAQELPQEQLAsEYVASVAQSHDASISDERCRSVLGALGLsGDKGRRIIGQLSGGEKARVALATFCLTPCNVLILDEPTNHLD 486
                 6899************************998888777777775..............34445667888766..466666666543134445555556677788999*******9557999999****************99999**********998 PP

>> TIGR01277  thiQ: thiamine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.0   9.4e-06   0.00046      14      46 ..      25      57 ..      16      70 .. 0.85
   2 !   22.6   0.0     3e-07   1.5e-05     108     167 ..     146     206 ..     140     229 .. 0.86
   3 !   15.0   0.0   6.4e-05    0.0031      18      54 ..     352     388 ..     346     398 .. 0.87
   4 !   22.3   0.0   3.7e-07   1.8e-05     107     160 ..     432     486 .]     425     486 .] 0.83

  Alignments for each domain:
  == domain 1    score: 17.7 bits;  conditional E-value: 9.4e-06
   TIGR01277 14 plefdlsveaGervailGesGaGkstllnliaG 46
                 l  + +v   er a+lG+ GaGkstll+ ia 
  MMETSP1137-20121227|6515_1 25 LLGVQWTVMPNERWALLGPNGAGKSTLLKAIAA 57
                56677889999******************9996 PP

  == domain 2    score: 22.6 bits;  conditional E-value: 3e-07
   TIGR01277 108 kvedvarqvGiady.lerlpeelsGGqrqrvalarclvrekpillldepfsaldpklreem 167
                 +v  v + +G ++  ++r  +++sGG + r+ lar l+ e  +l++dep   ld   r+ +
  MMETSP1137-20121227|6515_1 146 RVSRVLQGLGFDQAeFDRPCDSFSGGWQMRIGLARLLLSEPELLIMDEPTNHLDASARRWL 206
                 6777888889886438999***********************************9988755 PP

  == domain 3    score: 15.0 bits;  conditional E-value: 6.4e-05
   TIGR01277  18 dlsveaGervailGesGaGkstllnliaGflepasGe 54 
                 dl+v +G r+ + G+ GaGkstl++ +a  le  sG+
  MMETSP1137-20121227|6515_1 352 DLEVTKGMRLVLRGPNGAGKSTLVKALAATLELRSGD 388
                 89**********************9999888777775 PP

  == domain 4    score: 22.3 bits;  conditional E-value: 3.7e-07
   TIGR01277 107 ekvedvarqvGi.adylerlpeelsGGqrqrvalarclvrekpillldepfsald 160
                 e+ ++v   +G+ +d   r+ ++lsGG++ rvala   + +  +l+ldep   ld
  MMETSP1137-20121227|6515_1 432 ERCRSVLGALGLsGDKGRRIIGQLSGGEKARVALATFCLTPCNVLILDEPTNHLD 486
                 55666666677734677899****************999***********99887 PP

>> TIGR03258  PhnT: 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   2.6e-05    0.0013       9      62 ..      10      63 ..       2      73 .. 0.80
   2 !   28.6   0.0     3e-09   1.5e-07     114     177 ..     142     206 ..     133     217 .. 0.89
   3 !   31.4   0.1   4.5e-10   2.2e-08      20     170 ..     344     486 .]     324     486 .] 0.79

  Alignments for each domain:
  == domain 1    score: 15.7 bits;  conditional E-value: 2.6e-05
   TIGR03258  9 vvleslrvaygarvvlddlsleieaGellallGksGsGkttllravaGfvkadG 62
                + + ++ +  g  ++l  +  ++ + e  allG+ G+Gk+tll+a+a   + +G
  MMETSP1137-20121227|6515_1 10 ISIRNFDLWAGDSALLLGVQWTVMPNERWALLGPNGAGKSTLLKAIAAAARGEG 63
                556666666666777788889999***********************9988887 PP

  == domain 2    score: 28.6 bits;  conditional E-value: 3e-09
   TIGR03258 114 liaervadalklvqlsdaaarlp.aqlsGGqqqrvalaralvvrpdvllldeplsaldaqlrasv 177
                 +i+ rv+  l+ +++ +a    p   +sGG q r+ lar l  +p++l++dep   lda  r  +
  MMETSP1137-20121227|6515_1 142 EIEARVSRVLQGLGFDQAEFDRPcDSFSGGWQMRIGLARLLLSEPELLIMDEPTNHLDASARRWL 206
                 68999*********9999988882579********************************999765 PP

  == domain 3    score: 31.4 bits;  conditional E-value: 4.5e-10
   TIGR03258  20 arvvlddlsleieaGellallGksGsGkttllravaGfvkadGGrllvadrdlthlppykrnlallvqnyal.fphlkve.envafGlrarkqskaliaervadalklvqls.daaarlpaqlsGGqqqrvalaralvvrpdvllldeplsald 170
                 +  ++ d  le+  G  l l G+ G+Gk+tl++a+a  ++   G               + +l++  q+ a  +p  ++  e va    a+    +  +er    l  ++ls d + r+  qlsGG + rvala       +vl+ldep   ld
  MMETSP1137-20121227|6515_1 344 SVDIITDADLEVTKGMRLVLRGPNGAGKSTLVKALAATLELRSGDR---------FEDERLALGFFAQDLAQeLPQEQLAsEYVAS--VAQSHDASISDERCRSVLGALGLSgDKGRRIIGQLSGGEKARVALATFCLTPCNVLILDEPTNHLD 486
                 556788999*************************998887666543.........3344567888888877436666554155554..46666666667999999999999559*********************999999********99887 PP

>> TIGR02211  LolD_lipo_ex: lipoprotein releasing system, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.0   0.0   0.00096     0.047      19      53 ..      23      57 ..      14      68 .. 0.88
   2 !   28.1   0.0   5.8e-09   2.8e-07     117     181 ..     142     207 ..     133     242 .. 0.78
   3 !   28.9   0.0   3.3e-09   1.6e-07      17     173 ..     344     486 .]     336     486 .] 0.77

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 0.00096
   TIGR02211 19 evlkgvsleiekgelvaivGssGsGkstllhllgg 53
                 +l gv+  ++  e  a++G  G+Gkstll  +++
  MMETSP1137-20121227|6515_1 23 ALLLGVQWTVMPNERWALLGPNGAGKSTLLKAIAA 57
                568899************************98775 PP

  == domain 2    score: 28.1 bits;  conditional E-value: 5.8e-09
   TIGR02211 117 eakerakellekvglekrinkkps.elsGGerqrvaiaralvnkPklvladePtgnldkktakkif 181
                 e + r  ++l+ +g+++    +p   +sGG + r+ +ar l+++P+l++ dePt +ld+++ + + 
  MMETSP1137-20121227|6515_1 142 EIEARVSRVLQGLGFDQAEFDRPCdSFSGGWQMRIGLARLLLSEPELLIMDEPTNHLDASARRWLG 207
                 556777888899999887777775269*******************************98776554 PP

  == domain 3    score: 28.9 bits;  conditional E-value: 3.3e-09
   TIGR02211  17 eievlkgvsleiekgelvaivGssGsGkstllhllggldkptsGevllkGkelsklssneraklrnkklGfiyqf..hhlladftalenvamPlliskkskkeakerakellekvgle.krinkkpselsGGerqrvaiaralvnkPklvladePtgnld 173
                 +++++++ +le++kg  + + G  G+Gkstl+  l++  +  sG+  ++                   lGf  q     l ++  a e   + ++ ++++ + ++er+ ++l ++gl+ ++  +  ++lsGGe+ rva+a   ++  ++++ dePt +ld
  MMETSP1137-20121227|6515_1 344 SVDIITDADLEVTKGMRLVLRGPNGAGKSTLVKALAATLELRSGDR-FE--------------DERLALGFFAQDlaQELPQEQLASEY--VASVAQSHDASISDERCRSVLGALGLSgDKGRRIIGQLSGGEKARVALATFCLTPCNVLILDEPTNHLD 486
                 6789999999999999999999999999999999987555555542.22..............22245888877411233334444444..456677788888999***********736777789*********************************9 PP

>> TIGR03771  anch_rpt_ABC: anchored repeat-type ABC transporter, ATP-binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0   2.1e-05     0.001       7      29 ..      36      58 ..      31      73 .. 0.82
   2 !   25.3   0.0   4.9e-08   2.4e-06     108     175 ..     162     229 ..     145     240 .. 0.89
   3 !   15.2   0.0   5.8e-05    0.0028       1      35 [.     353     387 ..     353     402 .. 0.88
   4 !   18.3   0.0   6.4e-06   0.00031     108     145 ..     449     486 .]     432     486 .] 0.90

  Alignments for each domain:
  == domain 1    score: 16.6 bits;  conditional E-value: 2.1e-05
   TIGR03771  7 ellgllGpnGaGkttllrailgl 29
                e  +llGpnGaGk+tll+ai + 
  MMETSP1137-20121227|6515_1 36 ERWALLGPNGAGKSTLLKAIAAA 58
                5669***************9765 PP

  == domain 2    score: 25.3 bits;  conditional E-value: 4.9e-08
   TIGR03771 108 drpvGelsGGqrqrvlvaralavkpslllldepftGldlpsqellvelfeelagegtailmtthdlae 175
                 drp   +sGG + r+ +ar l  +p+ll++dep   ld  ++  l + +++ ag    +  ++  l+e
  MMETSP1137-20121227|6515_1 162 DRPCDSFSGGWQMRIGLARLLLSEPELLIMDEPTNHLDASARRWLGDYISSYAGTVLXVAAAANSLVE 229
                 89************************************************999988777777666665 PP

  == domain 3    score: 15.2 bits;  conditional E-value: 5.8e-05
   TIGR03771   1 lsvdkGellgllGpnGaGkttllrailglikvakG 35 
                 l+v kG  l l GpnGaGk+tl++a+ + ++ + G
  MMETSP1137-20121227|6515_1 353 LEVTKGMRLVLRGPNGAGKSTLVKALAATLELRSG 387
                 57899999*****************9998877766 PP

  == domain 4    score: 18.3 bits;  conditional E-value: 6.4e-06
   TIGR03771 108 drpvGelsGGqrqrvlvaralavkpslllldepftGld 145
                 +r +G+lsGG++ rv +a    +  ++l+ldep   ld
  MMETSP1137-20121227|6515_1 449 RRIIGQLSGGEKARVALATFCLTPCNVLILDEPTNHLD 486
                 799***************9999999********88776 PP

>> TIGR01288  nodI: nodulation ABC transporter NodI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.0   5.5e-05    0.0027       5      51 ..      10      56 ..       7      68 .. 0.81
   2 !   29.9   0.0   1.2e-09   5.8e-08     126     176 ..     158     208 ..     135     223 .. 0.80
   3 !   13.0   0.0   0.00017    0.0082       5      50 ..     333     378 ..     329     390 .. 0.81
   4 !   14.6   0.0   5.3e-05    0.0026     132     167 ..     451     486 .]     432     486 .] 0.90

  Alignments for each domain:
  == domain 1    score: 14.6 bits;  conditional E-value: 5.5e-05
   TIGR01288  5 idlvgvsksygdkvvvndlsftiaagecfgllgpngagkstiarlvl 51
                i + +     gd  ++  + +t+   e + llgpngagkst+ + + 
  MMETSP1137-20121227|6515_1 10 ISIRNFDLWAGDSALLLGVQWTVMPNERWALLGPNGAGKSTLLKAIA 56
                555556666688888888999********************987764 PP

  == domain 2    score: 29.9 bits;  conditional E-value: 1.2e-09
   TIGR01288 126 eskadvrvadlsggmkrrltlaralindpqllildepttgldpharhliwe 176
                 ++  d +  ++sgg + r+ lar l+ +p+lli+dept  ld  ar  + +
  MMETSP1137-20121227|6515_1 158 QAEFDRPCDSFSGGWQMRIGLARLLLSEPELLIMDEPTNHLDASARRWLGD 208
                 3456788899***********************************987655 PP

  == domain 3    score: 13.0 bits;  conditional E-value: 0.00017
   TIGR01288   5 idlvgvsksygdkvvvndlsftiaagecfgllgpngagkstiarlv 50 
                 +  + +++  g   ++ d  + +++g  + l gpngagkst+ + +
  MMETSP1137-20121227|6515_1 333 LRGACLRHPQGSVDIITDADLEVTKGMRLVLRGPNGAGKSTLVKAL 378
                 5555666777777899999**********************98866 PP

  == domain 4    score: 14.6 bits;  conditional E-value: 5.3e-05
   TIGR01288 132 rvadlsggmkrrltlaralindpqllildepttgld 167
                  + +lsgg k r++la+  +   ++lildept  ld
  MMETSP1137-20121227|6515_1 451 IIGQLSGGEKARVALATFCLTPCNVLILDEPTNHLD 486
                 5789****************************9997 PP

>> TIGR01978  sufC: FeS assembly ATPase SufC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.4   0.0   3.6e-08   1.8e-06       2      49 ..      11      58 ..      10      68 .. 0.90
   2 !   16.6   0.0   1.8e-05   0.00086     127     191 ..     151     214 ..     139     229 .. 0.83
   3 !   24.0   0.0     1e-07   4.9e-06      14      49 ..     346     381 ..     339     396 .. 0.89
   4 ?    5.7   0.0     0.038       1.8     143     176 ..     453     486 .]     431     486 .] 0.86

  Alignments for each domain:
  == domain 1    score: 25.4 bits;  conditional E-value: 3.6e-08
   TIGR01978  2 kikdlhvsvedkeiLkglnlevkkGevhaimGpnGsGkstLskvlagh 49
                +i+++ +   d  +L g++ +v + e  a++GpnG+GkstL k++a  
  MMETSP1137-20121227|6515_1 11 SIRNFDLWAGDSALLLGVQWTVMPNERWALLGPNGAGKSTLLKAIAAA 58
                578888889999*********************************976 PP

  == domain 2    score: 16.6 bits;  conditional E-value: 1.8e-05
   TIGR01978 127 lelleldeelleRslneGfsGGekkrneilqlallePklaiLDeiDsGlDvDalkivaegvnklr 191
                 l+ l +d++  +R   + fsGG + r  + +l+l eP+l i+De    lD  a + + + +++++
  MMETSP1137-20121227|6515_1 151 LQGLGFDQAEFDRPC-DSFSGGWQMRIGLARLLLSEPELLIMDEPTNHLDASARRWLGDYISSYA 214
                 555666666666665.46*************************************9999998886 PP

  == domain 3    score: 24.0 bits;  conditional E-value: 1e-07
   TIGR01978  14 eiLkglnlevkkGevhaimGpnGsGkstLskvlagh 49 
                 +i+++ +lev+kG   ++ GpnG+GkstL+k+la  
  MMETSP1137-20121227|6515_1 346 DIITDADLEVTKGMRLVLRGPNGAGKSTLVKALAAT 381
                 7999****************************9975 PP

  == domain 4    score: 5.7 bits;  conditional E-value: 0.038
   TIGR01978 143 eGfsGGekkrneilqlallePklaiLDeiDsGlD 176
                    sGGek r  +  + l   ++ iLDe    lD
  MMETSP1137-20121227|6515_1 453 GQLSGGEKARVALATFCLTPCNVLILDEPTNHLD 486
                 458************999999*******987776 PP

>> TIGR02633  xylG: D-xylose ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   0.0   9.6e-05    0.0047      15      59 ..      23      68 ..      11      75 .. 0.81
   2 !   25.6   0.0   1.8e-08   8.6e-07     383     468 ..     147     232 ..     129     235 .. 0.87
   3 !   15.6   0.0   1.8e-05   0.00089      12      49 ..     343     380 ..     336     392 .. 0.92
   4 !   16.2   0.0   1.3e-05   0.00062     396     435 ..     447     486 .]     415     486 .] 0.82

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 9.6e-05
   TIGR02633 15 kaldnidlklraGeivslcGenGaGkstlmkvlsg.vyphGtydGe 59
                  l +++ ++ + e  +l G nGaGkstl+k +++     G+ dG 
  MMETSP1137-20121227|6515_1 23 ALLLGVQWTVMPNERWALLGPNGAGKSTLLKAIAAaARGEGSADGX 68
                55779999***********************876515567777775 PP

  == domain 2    score: 25.6 bits;  conditional E-value: 1.8e-08
   TIGR02633 383 ieeeikrlkvktaspdlpiarlsGGnqqkavlakllllnprvlildeptrGvdvGakyeiyklinqlaqeGvaiivvsselaevlG 468
                 +++ ++ l    a+ d p  ++sGG q +  la+lll +p++li+dept  +d  a+  +   i+  a   + +   +  l ev G
  MMETSP1137-20121227|6515_1 147 VSRVLQGLGFDQAEFDRPCDSFSGGWQMRIGLARLLLSEPELLIMDEPTNHLDASARRWLGDYISSYAGTVLXVAAAANSLVEVTG 232
                 556677788888999999**************************************999999999888888888888888888866 PP

  == domain 3    score: 15.6 bits;  conditional E-value: 1.8e-05
   TIGR02633  12 ggvkaldnidlklraGeivslcGenGaGkstlmkvlsg 49 
                 g+v  + + dl++  G  + l G nGaGkstl+k l++
  MMETSP1137-20121227|6515_1 343 GSVDIITDADLEVTKGMRLVLRGPNGAGKSTLVKALAA 380
                 789999*****************************987 PP

  == domain 4    score: 16.2 bits;  conditional E-value: 1.3e-05
   TIGR02633 396 spdlpiarlsGGnqqkavlakllllnprvlildeptrGvd 435
                 +    i++lsGG++ +  la   l+  +vlildept  +d
  MMETSP1137-20121227|6515_1 447 KGRRIIGQLSGGEKARVALATFCLTPCNVLILDEPTNHLD 486
                 555679******************************8776 PP

>> TIGR00955  3a01204: pigment precursor permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   3.3e-05    0.0016      40      77 ..      24      61 ..      11      70 .. 0.81
   2 !   23.8   0.0   6.6e-08   3.2e-06     139     200 ..     145     201 ..     140     204 .. 0.86
   3 !    7.8   0.0    0.0047      0.23      47      74 ..     354     381 ..     332     390 .. 0.80
   4 !   25.2   0.0   2.6e-08   1.3e-06     138     198 ..     431     486 .]     410     486 .] 0.85

  Alignments for each domain:
  == domain 1    score: 14.9 bits;  conditional E-value: 3.3e-05
   TIGR00955 40 llknvsGvaksGellAvlGsSGaGKtTLlnalafrsek 77
                ll +v  ++ + e  A+lG+ GaGK+TLl+a+a   + 
  MMETSP1137-20121227|6515_1 24 LLLGVQWTVMPNERWALLGPNGAGKSTLLKAIAAAARG 61
                666666677778889*****************987665 PP

  == domain 2    score: 23.8 bits;  conditional E-value: 6.6e-08
   TIGR00955 139 erveevleelgLrkcadtrigvpgrvkglSgGerkRlalaselltdPilLfcDEPTsGLDsf 200
                 +rv+ vl+ lg  +++  r        + SgG + R+ la  ll++P lL++DEPT  LD+ 
  MMETSP1137-20121227|6515_1 145 ARVSRVLQGLGFDQAEFDRPC-----DSFSGGWQMRIGLARLLLSEPELLIMDEPTNHLDAS 201
                 688889999998888765544.....489*******************************85 PP

  == domain 3    score: 7.8 bits;  conditional E-value: 0.0047
   TIGR00955  47 vaksGellAvlGsSGaGKtTLlnalafr 74 
                 ++ +G  l + G+ GaGK+TL++ala  
  MMETSP1137-20121227|6515_1 354 EVTKGMRLVLRGPNGAGKSTLVKALAAT 381
                 56778888899**************975 PP

  == domain 4    score: 25.2 bits;  conditional E-value: 2.6e-08
   TIGR00955 138 rerveevleelgLrkcadtrigvpgrvkglSgGerkRlalaselltdPilLfcDEPTsGLD 198
                  er   vl +lgL+  +  ri   g+   lSgGe+ R+ala+  lt   +L++DEPT  LD
  MMETSP1137-20121227|6515_1 431 DERCRSVLGALGLSGDKGRRII--GQ---LSGGEKARVALATFCLTPCNVLILDEPTNHLD 486
                 6788899999999877766665..56...*****************************998 PP

>> TIGR01842  type_I_sec_PrtD: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.6   0.0   0.00064     0.031     332     366 ..      23      57 ..      10      66 .. 0.87
   2 !   26.2   0.0   1.2e-08   5.7e-07     452     490 ..     165     203 ..     125     232 .. 0.84
   3 !   19.5   0.0   1.3e-06   6.1e-05     320     373 ..     334     387 ..     308     395 .. 0.87
   4 !   13.2   0.0    0.0001    0.0051     454     486 ..     454     486 .]     442     486 .] 0.91

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 0.00064
   TIGR01842 332 ktlkgisfalkaGealaiiGpsgsGkssLarllvG 366
                   l g++ ++ + e  a++Gp g+Gks+L + +  
  MMETSP1137-20121227|6515_1  23 ALLLGVQWTVMPNERWALLGPNGAGKSTLLKAIAA 57 
                 56889999***********************9875 PP

  == domain 2    score: 26.2 bits;  conditional E-value: 1.2e-08
   TIGR01842 452 GaaLsgGqrqRiaLaRalygdPklvvLDePnanLDeeGe 490
                   + sgG + Ri+LaR l  +P l+++DeP   LD++  
  MMETSP1137-20121227|6515_1 165 CDSFSGGWQMRIGLARLLLSEPELLIMDEPTNHLDASAR 203
                 5789*******************************9765 PP

  == domain 3    score: 19.5 bits;  conditional E-value: 1.3e-06
   TIGR01842 320 envslvppeekkktlkgisfalkaGealaiiGpsgsGkssLarllvGvwlpasG 373
                     l++p++  +++++ ++++++G  l++ Gp g+Gks+L++ l    +  sG
  MMETSP1137-20121227|6515_1 334 RGACLRHPQGSVDIITDADLEVTKGMRLVLRGPNGAGKSTLVKALAATLELRSG 387
                 5567899*************************************9888777766 PP

  == domain 4    score: 13.2 bits;  conditional E-value: 0.0001
   TIGR01842 454 aLsgGqrqRiaLaRalygdPklvvLDePnanLD 486
                 +LsgG + R+aLa        +++LDeP   LD
  MMETSP1137-20121227|6515_1 454 QLSGGEKARVALATFCLTPCNVLILDEPTNHLD 486
                 79***********99999999********9998 PP

>> TIGR02204  MsbA_rel: ABC transporter, permease/ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0   1.4e-05    0.0007     354     385 ..      23      54 ..      16      59 .. 0.89
   2 !   20.3   0.0     8e-07   3.9e-05     475     512 ..     166     203 ..     127     213 .. 0.84
   3 !   17.2   0.0   6.9e-06   0.00034     344     387 ..     337     379 ..     280     392 .. 0.77
   4 !   15.4   0.0   2.5e-05    0.0012     476     508 ..     454     486 .]     419     486 .] 0.89

  Alignments for each domain:
  == domain 1    score: 16.2 bits;  conditional E-value: 1.4e-05
   TIGR02204 354 kaldgldltvrpGetvalvGPsGaGkstllel 385
                   l g++ tv p e+ al GP GaGkstll+ 
  MMETSP1137-20121227|6515_1  23 ALLLGVQWTVMPNERWALLGPNGAGKSTLLKA 54 
                 5678999**********************986 PP

  == domain 2    score: 20.3 bits;  conditional E-value: 8e-07
   TIGR02204 475 vtLsGGqkqriaiarailkdapiLLLdeatsaLdaese 512
                  ++sGG + ri +ar +l +  +L++de t+ Lda + 
  MMETSP1137-20121227|6515_1 166 DSFSGGWQMRIGLARLLLSEPELLIMDEPTNHLDASAR 203
                 478********************************865 PP

  == domain 3    score: 17.2 bits;  conditional E-value: 6.9e-06
   TIGR02204 344 kfayParpdqkaldgldltvrpGetvalvGPsGaGkstllelll 387
                  +++P+ +    + + dl+v +G ++ l GP GaGkstl++ l 
  MMETSP1137-20121227|6515_1 337 CLRHPQGS-VDIITDADLEVTKGMRLVLRGPNGAGKSTLVKALA 379
                 45666655.77899*************************99876 PP

  == domain 4    score: 15.4 bits;  conditional E-value: 2.5e-05
   TIGR02204 476 tLsGGqkqriaiarailkdapiLLLdeatsaLd 508
                 +LsGG k r+a+a   l   ++L+Lde t+ Ld
  MMETSP1137-20121227|6515_1 454 QLSGGEKARVALATFCLTPCNVLILDEPTNHLD 486
                 69****************************998 PP

>> TIGR01187  potA: polyamine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.3   0.1    0.0092      0.45       1      18 [.      40      57 ..      40      65 .. 0.89
   2 !   30.8   0.0   6.7e-10   3.3e-08      75     137 ..     141     204 ..     131     211 .. 0.87
   3 ?    4.8   0.0     0.054       2.6       2      26 ..     364     388 ..     363     396 .. 0.85
   4 !   24.6   0.0     5e-08   2.5e-06      72     132 ..     425     486 .]     416     486 .] 0.87

  Alignments for each domain:
  == domain 1    score: 7.3 bits;  conditional E-value: 0.0092
   TIGR01187  1 lLGpsGsGkttlLrllaG 18
                lLGp G+Gk+tlL+ +a 
  MMETSP1137-20121227|6515_1 40 LLGPNGAGKSTLLKAIAA 57
                8*************9996 PP

  == domain 2    score: 30.8 bits;  conditional E-value: 6.7e-10
   TIGR01187  75 aeikervkeaLelvqleefakrkp.sqlsGGqrqrvalaravvkkPkiLLlDeplsaLDkkLrd 137
                  ei++rv  +L+   +++    +p   +sGG + r+ lar +  +P++L++Dep   LD   r 
  MMETSP1137-20121227|6515_1 141 YEIEARVSRVLQGLGFDQAEFDRPcDSFSGGWQMRIGLARLLLSEPELLIMDEPTNHLDASARR 204
                 699*********9999988755551679*******************************98775 PP

  == domain 3    score: 4.8 bits;  conditional E-value: 0.054
   TIGR01187   2 LGpsGsGkttlLrllaGleeldsGk 26 
                  Gp G+Gk+tl++ la   el sG 
  MMETSP1137-20121227|6515_1 364 RGPNGAGKSTLVKALAATLELRSGD 388
                 69**************988888875 PP

  == domain 4    score: 24.6 bits;  conditional E-value: 5e-08
   TIGR01187  72 vpkaeikervkeaLelvqle.efakrkpsqlsGGqrqrvalaravvkkPkiLLlDeplsaLD 132
                  +++  +er + +L    l+ + ++r + qlsGG + rvala       ++L+lDep   LD
  MMETSP1137-20121227|6515_1 425 HDASISDERCRSVLGALGLSgDKGRRIIGQLSGGEKARVALATFCLTPCNVLILDEPTNHLD 486
                 56666789*******99997367888889****************************99887 PP

>> TIGR02769  nickel_nikE: nickel import ATP-binding protein NikE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.5   0.0    0.0027      0.13      25      58 ..      23      56 ..      15      67 .. 0.84
   2 !   26.3   0.0   2.1e-08     1e-06     127     184 ..     144     201 ..     137     206 .. 0.94
   3 !   15.3   0.0   4.7e-05    0.0023      19      58 ..     340     379 ..     329     392 .. 0.85
   4 !   16.7   0.0   1.8e-05   0.00086     120     182 ..     424     486 .]     411     486 .] 0.91

  Alignments for each domain:
  == domain 1    score: 9.5 bits;  conditional E-value: 0.0027
   TIGR02769 25 avldnvslsleeGetvallGrsGaGkstlarlll 58
                a+l +v+ ++   e  allG  GaGkstl + + 
  MMETSP1137-20121227|6515_1 23 ALLLGVQWTVMPNERWALLGPNGAGKSTLLKAIA 56
                5677888899999999*************99775 PP

  == domain 2    score: 26.3 bits;  conditional E-value: 2.1e-08
   TIGR02769 127 kariaellelvelrsevldklPrqlsGGqlqriniaralavePklivldeavsnldlv 184
                 +ar++++l+ +++++ + d+    +sGG   ri +ar l  eP+l+++de    ld  
  MMETSP1137-20121227|6515_1 144 EARVSRVLQGLGFDQAEFDRPCDSFSGGWQMRIGLARLLLSEPELLIMDEPTNHLDAS 201
                 799*************************************************999975 PP

  == domain 3    score: 15.3 bits;  conditional E-value: 4.7e-05
   TIGR02769  19 gkkqrkavldnvslsleeGetvallGrsGaGkstlarlll 58 
                 + ++   ++++ +l++ +G+ + l G  GaGkstl + l 
  MMETSP1137-20121227|6515_1 340 HPQGSVDIITDADLEVTKGMRLVLRGPNGAGKSTLVKALA 379
                 456677899**************************99875 PP

  == domain 4    score: 16.7 bits;  conditional E-value: 1.8e-05
   TIGR02769 120 sldeserkariaellelvelrsevldklPrqlsGGqlqriniaralavePklivldeavsnld 182
                 s d+s   +r   +l +++l+ ++ ++   qlsGG   r+++a       ++++lde    ld
  MMETSP1137-20121227|6515_1 424 SHDASISDERCRSVLGALGLSGDKGRRIIGQLSGGEKARVALATFCLTPCNVLILDEPTNHLD 486
                 557788899**********************************98888889******998887 PP

>> TIGR03796  NHLM_micro_ABC1: NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.1   0.0   0.00017    0.0084     487     527 ..      17      57 ..       6      71 .. 0.86
   2 !   28.4   0.0     2e-09     1e-07     608     669 ..     160     221 ..     133     227 .. 0.87
   3 !   20.0   0.0   7.4e-07   3.6e-05     479     647 ..     332     486 .]     268     486 .] 0.66

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 0.00017
   TIGR03796 487 ysaleapliedfslslkpGqrvAlvGgsGsGkstiaklvaG 527
                   a +++l+ +++ ++ p +r Al G+ G+Gkst+ k +a 
  MMETSP1137-20121227|6515_1  17 LWAGDSALLLGVQWTVMPNERWALLGPNGAGKSTLLKAIAA 57 
                 55667899999************************999985 PP

  == domain 2    score: 28.4 bits;  conditional E-value: 2e-09
   TIGR03796 608 elaegganlsGGqrqRleiARaLvknPsiLilDEatsaLDaetEkaidenlrrRgctciiva 669
                 e       +sGG + R+ +AR L ++P +Li+DE t  LDa++ + + + +     t++ va
  MMETSP1137-20121227|6515_1 160 EFDRPCDSFSGGWQMRIGLARLLLSEPELLIMDEPTNHLDASARRWLGDYISSYAGTVLXVA 221
                 55556778*************************************99999999888888887 PP

  == domain 3    score: 20.0 bits;  conditional E-value: 7.4e-07
   TIGR03796 479 elrnvtfgysaleapliedfslslkpGqrvAlvGgsGsGkstiaklvaGlyepwsGeilfDgkpreeiprevlanslalvdqdivlfegtvrdnltlwdetipeedlvrAakDAaihdvilarpggyeaelaegganlsGGqrqRleiARaLvknPsiLilDEatsaLD 647
                  lr+    + +    +i d +l++++G+r+ l G+ G+Gkst+ k +a   e  sG+ + D++ +  +  + la+ l   +q  + + ++v +    +d++i++e+  + +       + l ++g+   +++     lsGG++ R+ +A    +   +LilDE t  LD
  MMETSP1137-20121227|6515_1 332 ALRGACLRHPQGSVDIITDADLEVTKGMRLVLRGPNGAGKSTLVKALAATLELRSGDRFEDERLALGFFAQDLAQELPQ-EQLASEYVASVAQ---SHDASISDERCRSVLG------A-LGLSGDKGRRII---GQLSGGEKARVALATFCLTPCNVLILDEPTNHLD 486
                 5666666666677789***************************************998888877766666666666653.5555555555554...3677777766543332......1.233444444444...3477777777777777777777777777777776 PP

>> TIGR03411  urea_trans_UrtD: urea ABC transporter, ATP-binding protein UrtD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.0   5.8e-06   0.00028      20      54 ..      27      61 ..      10      71 .. 0.85
   2 !   14.4   0.0   9.7e-05    0.0047     119     190 ..     142     214 ..     126     222 .. 0.85
   3 ?    4.7   0.0     0.088       4.3     100     173 ..     247     327 ..     237     330 .. 0.75
   4 !   15.6   0.0   4.4e-05    0.0021      15      58 ..     345     388 ..     338     406 .. 0.83
   5 !   10.4   0.0    0.0016      0.08     119     172 ..     429     483 ..     407     486 .] 0.81

  Alignments for each domain:
  == domain 1    score: 18.4 bits;  conditional E-value: 5.8e-06
   TIGR03411 20 dlslsveegelrviiGpnGaGkttllDvitGktrp 54
                 ++ +v ++e  +++GpnGaGk+tll +i+  +r 
  MMETSP1137-20121227|6515_1 27 GVQWTVMPNERWALLGPNGAGKSTLLKAIAAAARG 61
                57788999*********************988775 PP

  == domain 2    score: 14.4 bits;  conditional E-value: 9.7e-05
   TIGR03411 119 eekerieevleligLee.kadkkaglLshGqkqwLeigmllvqepkllllDePvaGmtdeetektaellkela 190
                 e ++r+++vl+ +g ++ + d+   + s G + ++ ++ ll+ ep+ll++DeP+  + ++ ++  ++ +++ a
  MMETSP1137-20121227|6515_1 142 EIEARVSRVLQGLGFDQaEFDRPCDSFSGGWQMRIGLARLLLSEPELLIMDEPTNHLDASARRWLGDYISSYA 214
                 66789999999999875267999*******************************9999988888888777665 PP

  == domain 3    score: 4.7 bits;  conditional E-value: 0.088
   TIGR03411 100 lalkadksvlallfarlskeekerieevleligLe....ekadkkaglLshGqkqwLeigmllv...qepkllllDePvaG 173
                 la +++++  a  +++++++e++r+++ ++ +g +    ++a+ +ag+Ls  + q+ e   l+v   q+pkl l   P  G
  MMETSP1137-20121227|6515_1 247 LAEREERQARARATVEAQQREAKRLQDFIDRMGAKaskaSQAKDRAGKLSKLESQMAEAERLVVgarQRPKLTLAPPPSCG 327
                 5667777777777778888888888888877766511115677889************99988755688999887777665 PP

  == domain 4    score: 15.6 bits;  conditional E-value: 4.4e-05
   TIGR03411  15 fkalndlslsveegelrviiGpnGaGkttllDvitGktrpdeGs 58 
                 +  ++d +l+v++g   v+ GpnGaGk+tl+ +++   +  +G+
  MMETSP1137-20121227|6515_1 345 VDIITDADLEVTKGMRLVLRGPNGAGKSTLVKALAATLELRSGD 388
                 56789999****99988999***********9998877777776 PP

  == domain 5    score: 10.4 bits;  conditional E-value: 0.0016
   TIGR03411 119 eekerieevleligLeeka.dkkaglLshGqkqwLeigmllvqepkllllDePva 172
                  ++er ++vl  +gL+  + ++  g+Ls G+k ++ ++ + +   ++l+lDeP+ 
  MMETSP1137-20121227|6515_1 429 ISDERCRSVLGALGLSGDKgRRIIGQLSGGEKARVALATFCLTPCNVLILDEPTN 483
                 456788999999999865516789*****************************85 PP

>> TIGR03005  ectoine_ehuA: ectoine/hydroxyectoine ABC transporter, ATP-binding protein EhuA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.5   0.0   0.00027     0.013      14      46 ..      23      55 ..      10      70 .. 0.85
   2 !   16.8   0.0   1.3e-05   0.00063     122     179 ..     142     200 ..     122     206 .. 0.83
   3 !   15.4   0.0   3.5e-05    0.0017      11      50 ..     343     383 ..     337     396 .. 0.84
   4 !   19.8   0.0   1.7e-06   8.2e-05     123     178 ..     430     486 .]     415     486 .] 0.85

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 0.00027
   TIGR03005 14 tvldglelevaaGekvaliGpsGsGkstilril 46
                 +l g++ +v++ e+ al+Gp G+Gkst+l+ +
  MMETSP1137-20121227|6515_1 23 ALLLGVQWTVMPNERWALLGPNGAGKSTLLKAI 55
                57889999**********************976 PP

  == domain 2    score: 16.8 bits;  conditional E-value: 1.3e-05
   TIGR03005 122 eaekravelldmvGladkadalpa.qlsGGqkqrvaiaralalrpkvllfdevtsaldp 179
                 e e+r  ++l+ +G+ +     p+  +sGG + r+ +ar l  +p +l++de+t  ld 
  MMETSP1137-20121227|6515_1 142 EIEARVSRVLQGLGFDQAEFDRPCdSFSGGWQMRIGLARLLLSEPELLIMDEPTNHLDA 200
                 668888889999998877666665269******************************96 PP

  == domain 3    score: 15.4 bits;  conditional E-value: 3.5e-05
   TIGR03005  11 geltvldglelevaaGekvaliGpsGsGkstilrilm.tle 50 
                 g++ ++ +++lev++G ++ l Gp G+Gkst+++ l  tle
  MMETSP1137-20121227|6515_1 343 GSVDIITDADLEVTKGMRLVLRGPNGAGKSTLVKALAaTLE 383
                 567789999************************99862555 PP

  == domain 4    score: 19.8 bits;  conditional E-value: 1.7e-06
   TIGR03005 123 aekravelldmvGl.adkadalpaqlsGGqkqrvaiaralalrpkvllfdevtsald 178
                 +++r   +l  +Gl +dk   +  qlsGG+k rva+a       +vl++de+t  ld
  MMETSP1137-20121227|6515_1 430 SDERCRSVLGALGLsGDKGRRIIGQLSGGEKARVALATFCLTPCNVLILDEPTNHLD 486
                 46788889999999459999*****************87666669********9998 PP

>> TIGR00958  3a01208: antigen peptide transporter 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   0.0   8.3e-05     0.004     495     525 ..      23      53 ..      19      58 .. 0.87
   2 !   25.5   0.0   1.6e-08   7.8e-07     617     672 ..     167     222 ..     144     231 .. 0.91
   3 !   11.1   0.0   0.00038     0.018     493     528 ..     344     379 ..     336     390 .. 0.88
   4 !   12.9   0.0    0.0001    0.0051     617     649 ..     454     486 .]     444     486 .] 0.91

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 8.3e-05
   TIGR00958 495 pvlkdLtftlepGevvalVGPsGsGKStvaa 525
                  +l +  +t+ p e  al GP+G GKSt   
  MMETSP1137-20121227|6515_1  23 ALLLGVQWTVMPNERWALLGPNGAGKSTLLK 53 
                 56788999********************865 PP

  == domain 2    score: 25.5 bits;  conditional E-value: 1.6e-08
   TIGR00958 617 qlsgGqkqriAiARALvrkPrvLiLDeAtSALDaeveqllqesksaksrtvlliah 672
                   sgG + ri +AR L+ +P +Li+De t  LDa   + l +  s++  tvl +a 
  MMETSP1137-20121227|6515_1 167 SFSGGWQMRIGLARLLLSEPELLIMDEPTNHLDASARRWLGDYISSYAGTVLXVAA 222
                 689*************************************************9985 PP

  == domain 3    score: 11.1 bits;  conditional E-value: 0.00038
   TIGR00958 493 dkpvlkdLtftlepGevvalVGPsGsGKStvaalle 528
                 ++ ++ d  + ++ G    l GP+G GKSt +  l 
  MMETSP1137-20121227|6515_1 344 SVDIITDADLEVTKGMRLVLRGPNGAGKSTLVKALA 379
                 678999999*********************998775 PP

  == domain 4    score: 12.9 bits;  conditional E-value: 0.0001
   TIGR00958 617 qlsgGqkqriAiARALvrkPrvLiLDeAtSALD 649
                 qlsgG k r+A+A   +    vLiLDe t  LD
  MMETSP1137-20121227|6515_1 454 QLSGGEKARVALATFCLTPCNVLILDEPTNHLD 486
                 9*************9999999********9998 PP

>> TIGR03415  ABC_choXWV_ATP: choline ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   0.0      0.02      0.99      46      72 ..      31      57 ..      19      65 .. 0.81
   2 !   28.6   0.0   2.9e-09   1.4e-07     141     205 ..     143     208 ..     133     217 .. 0.85
   3 !   15.2   0.0   3.4e-05    0.0017      34      71 ..     342     379 ..     334     425 .. 0.88
   4 !   11.9   0.0   0.00034     0.017     159     196 ..     449     486 .]     426     486 .] 0.80

  Alignments for each domain:
  == domain 1    score: 6.1 bits;  conditional E-value: 0.02
   TIGR03415 46 dveeGeilvlmGlsGsGkssllravng 72
                +v   e   l+G  G+Gks+ll+a+  
  MMETSP1137-20121227|6515_1 31 TVMPNERWALLGPNGAGKSTLLKAIAA 57
                6666788899**************964 PP

  == domain 2    score: 28.6 bits;  conditional E-value: 2.9e-09
   TIGR03415 141 rrkrveeqlelvglaeWa.dkkvgelsGGmqqrvGlarafateadillmdePfsaldPliraklqd 205
                    rv++ l+ +g+++ + d+  + +sGG q r+Glar +  e ++l+mdeP   ld   r  l d
  MMETSP1137-20121227|6515_1 143 IEARVSRVLQGLGFDQAEfDRPCDSFSGGWQMRIGLARLLLSEPELLIMDEPTNHLDASARRWLGD 208
                 5667777888788877653778899********************************999998877 PP

  == domain 3    score: 15.2 bits;  conditional E-value: 3.4e-05
   TIGR03415  34 tGlvlgvadasldveeGeilvlmGlsGsGkssllravn 71 
                  G+v  + da l+v++G  lvl G  G+Gks+l++a+ 
  MMETSP1137-20121227|6515_1 342 QGSVDIITDADLEVTKGMRLVLRGPNGAGKSTLVKALA 379
                 57788899***************************986 PP

  == domain 4    score: 11.9 bits;  conditional E-value: 0.00034
   TIGR03415 159 dkkvgelsGGmqqrvGlarafateadillmdePfsald 196
                  + +g+lsGG + rv la    t +++l++deP   ld
  MMETSP1137-20121227|6515_1 449 RRIIGQLSGGEKARVALATFCLTPCNVLILDEPTNHLD 486
                 456899***************************99887 PP

>> TIGR01186  proV: glycine betaine/L-proline transport ATP binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.0     0.085       4.1      13      39 ..      29      55 ..      19      66 .. 0.84
   2 !   29.6   0.0   1.7e-09   8.1e-08     124     170 ..     162     208 ..     140     217 .. 0.81
   3 !   21.5   0.0   4.7e-07   2.3e-05       4     161 ..     343     486 .]     341     486 .] 0.74

  Alignments for each domain:
  == domain 1    score: 4.2 bits;  conditional E-value: 0.085
   TIGR01186 13 dleieeGeiiviiGlsGsGkstlvrll 39
                +  +   e   ++G+ G+Gkstl++ +
  MMETSP1137-20121227|6515_1 29 QWTVMPNERWALLGPNGAGKSTLLKAI 55
                56677778899*************987 PP

  == domain 2    score: 29.6 bits;  conditional E-value: 1.7e-09
   TIGR01186 124 dryPdelsGGmqqrvGlaralaaePdlllmdeafsaldPlirdelqd 170
                 dr  d +sGG q r+Glar l  eP+ll+mde+   ld   r  l d
  MMETSP1137-20121227|6515_1 162 DRPCDSFSGGWQMRIGLARLLLSEPELLIMDEPTNHLDASARRWLGD 208
                 566799********************************998887766 PP

  == domain 3    score: 21.5 bits;  conditional E-value: 4.7e-07
   TIGR01186   4 GlklgvndvdleieeGeiiviiGlsGsGkstlvrllnrliePtaGkilidGediaeisdaelrevrrkkiamviqkial.fPhmtildnislglellk.ideqerkekalealklvdl.eeyedryPdelsGGmqqrvGlaralaaePdlllmdeafsald 161
                 G+   + d+dle+++G  +v+ G+ G+Gkstlv+ l   +e  +G  + d          +l       +++  q++a  +P   +    +++  +++  d+    e+ + +l  ++l  +   r   +lsGG + rv la    +  ++l++de+   ld
  MMETSP1137-20121227|6515_1 343 GSVDIITDADLEVTKGMRLVLRGPNGAGKSTLVKALAATLELRSGDRFEDE---------RL------ALGFFAQDLAQeLPQEQLA--SEYVASVAQsHDASISDERCRSVLGALGLsGDKGRRIIGQLSGGEKARVALATFCLTPCNVLILDEPTNHLD 486
                 55566899*********************************9999877553.........33......5566677766436666554..355555544155666778888888888885556667788888888888888888777888888888877776 PP

>> TIGR02203  MsbA_lipidA: lipid A export permease/ATP-binding protein MsbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.0   0.0    0.0019     0.094     345     379 ..      21      55 ..       5      63 .. 0.84
   2 !   15.8   0.0   1.6e-05   0.00079     466     508 ..     163     205 ..     118     213 .. 0.77
   3 !   31.3   0.0   3.3e-10   1.6e-08     332     502 ..     331     486 .]     327     486 .] 0.83

  Alignments for each domain:
  == domain 1    score: 9.0 bits;  conditional E-value: 0.0019
   TIGR02203 345 drealdsislkveaGevvalvGrsGsGkstlvnll 379
                 d + l +++ +v + e+ al G+ G+Gkstl++ +
  MMETSP1137-20121227|6515_1  21 DSALLLGVQWTVMPNERWALLGPNGAGKSTLLKAI 55 
                 55678899***********************9877 PP

  == domain 2    score: 15.8 bits;  conditional E-value: 1.6e-05
   TIGR02203 466 engskLsGGqRqRlaiaRallkdaPiLiLDeatsaLDneseRl 508
                 +     sGG   R+ +aR ll +  +Li+De t  LD+ + R 
  MMETSP1137-20121227|6515_1 163 RPCDSFSGGWQMRIGLARLLLSEPELLIMDEPTNHLDASARRW 205
                 456679*******************************988875 PP

  == domain 3    score: 31.3 bits;  conditional E-value: 3.3e-10
   TIGR02203 332 vefrnvtfrypgddrealdsislkveaGevvalvGrsGsGkstlvnllpRFyepdsGeillDgvdladlkLasLRrqvalvsqdvvLFddtiaenvaYgeleevdeaeveealaaaylkdlvdklpeGldtevGengskLsGGqRqRlaiaRallkdaPiLiLDeatsaLD 502
                 v +r    r+p+ +++++ + +l+v++G ++ l G+ G+Gkstlv+ l+  +e  sG+   D+     l L    +++a+   +  L  + +a  va ++ +++++++ +++l a  l       ++G    +    ++LsGG + R+a+a   l    +LiLDe t  LD
  MMETSP1137-20121227|6515_1 331 VALRGACLRHPQGSVDIITDADLEVTKGMRLVLRGPNGAGKSTLVKALAATLELRSGDRFEDER----LALGFFAQDLAQELPQEQLASEYVA-SVAQSHDASISDERCRSVLGALGLS-----GDKGR-RII----GQLSGGEKARVALATFCLTPCNVLILDEPTNHLD 486
                 567888899************************************************9877754....5566666666665566678777776.6999999999999999999875443.....34443.334....57****************************9998 PP

>> TIGR01193  bacteriocin_ABC: ABC-type bacteriocin transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   0.0     0.027       1.3     489     520 ..      24      55 ..      10      63 .. 0.87
   2 !   21.3   0.0   3.6e-07   1.8e-05     589     645 ..     142     201 ..     126     225 .. 0.79
   3 !   12.2   0.0   0.00021      0.01     488     530 ..     346     388 ..     341     399 .. 0.91
   4 !   18.7   0.0   2.3e-06   0.00011     611     643 ..     454     486 .]     443     486 .] 0.95

  Alignments for each domain:
  == domain 1    score: 5.2 bits;  conditional E-value: 0.027
   TIGR01193 489 vledislkikknekitlvGlsGsGkstlakll 520
                 +l  ++ ++  ne+ +l+G  G+Gkstl k +
  MMETSP1137-20121227|6515_1  24 LLLGVQWTVMPNERWALLGPNGAGKSTLLKAI 55 
                 56678899999*****************9976 PP

  == domain 2    score: 21.3 bits;  conditional E-value: 3.6e-07
   TIGR01193 589 eikddieklplGy...qtelseeassisgGqkqrlalarallsdskvlildestsnldll 645
                 ei++ + ++ +G+   q+e+     s sgG + r+ lar lls+ ++li+de t +ld  
  MMETSP1137-20121227|6515_1 142 EIEARVSRVLQGLgfdQAEFDRPCDSFSGGWQMRIGLARLLLSEPELLIMDEPTNHLDAS 201
                 78888888877762234566677899********************************75 PP

  == domain 3    score: 12.2 bits;  conditional E-value: 0.00021
   TIGR01193 488 evledislkikknekitlvGlsGsGkstlakllvkffqaesGe 530
                 +++ d +l+++k  +++l G  G+Gkstl+k l    + +sG+
  MMETSP1137-20121227|6515_1 346 DIITDADLEVTKGMRLVLRGPNGAGKSTLVKALAATLELRSGD 388
                 799*****************************99988888875 PP

  == domain 4    score: 18.7 bits;  conditional E-value: 2.3e-06
   TIGR01193 611 sisgGqkqrlalarallsdskvlildestsnld 643
                 ++sgG k r+ala   l++++vlilde t +ld
  MMETSP1137-20121227|6515_1 454 QLSGGEKARVALATFCLTPCNVLILDEPTNHLD 486
                 79****************************998 PP

>> TIGR01184  ntrCD: nitrate ABC transporter, ATP-binding proteins C and D
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   0.0     0.011      0.54       3      35 ..      27      59 ..      25      69 .. 0.85
   2 !   23.8   0.0   1.3e-07   6.2e-06      95     155 ..     147     208 ..     130     218 .. 0.83
   3 ?    6.9   0.0     0.018       0.9       2      33 ..     349     380 ..     348     393 .. 0.86
   4 !   17.7   0.0   9.3e-06   0.00046     101     146 ..     440     486 .]     407     486 .] 0.74

  Alignments for each domain:
  == domain 1    score: 7.6 bits;  conditional E-value: 0.011
   TIGR01184  3 dvdleikkgefislighsgcgkstllnliagle 35
                +v+ ++   e  +l+g  g gkstll  ia  +
  MMETSP1137-20121227|6515_1 27 GVQWTVMPNERWALLGPNGAGKSTLLKAIAAAA 59
                577889999999***************999765 PP

  == domain 2    score: 23.8 bits;  conditional E-value: 1.3e-07
   TIGR01184  95 veehielvglreaa.dkrpeqlsggmkqrvaiaralsirpklllldepfgaldaltreelqe 155
                 v+  ++ +g+ +a+ d+  + +sgg + r+ +ar l   p+ll++dep   lda +r  l +
  MMETSP1137-20121227|6515_1 147 VSRVLQGLGFDQAEfDRPCDSFSGGWQMRIGLARLLLSEPELLIMDEPTNHLDASARRWLGD 208
                 666677777877763566689*********************************99987755 PP

  == domain 3    score: 6.9 bits;  conditional E-value: 0.018
   TIGR01184   2 kdvdleikkgefislighsgcgkstllnliag 33 
                  d dle+ kg  + l g  g gkstl+  +a 
  MMETSP1137-20121227|6515_1 349 TDADLEVTKGMRLVLRGPNGAGKSTLVKALAA 380
                 6889**********************986654 PP

  == domain 4    score: 17.7 bits;  conditional E-value: 9.3e-06
   TIGR01184 101 lvglreaa.dkrpeqlsggmkqrvaiaralsirpklllldepfgald 146
                  +gl+  +  + ++qlsgg k rva+a    +  ++l+ldep   ld
  MMETSP1137-20121227|6515_1 440 ALGLSGDKgRRIIGQLSGGEKARVALATFCLTPCNVLILDEPTNHLD 486
                 44555444034579*************9999999********98887 PP

>> TIGR03269  met_CoM_red_A2: methyl coenzyme M reductase system, component A2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   0.0     0.028       1.4     302     332 ..      27      57 ..      21      65 .. 0.90
   2 !   22.5   0.0   1.6e-07   7.7e-06     406     466 ..     150     206 ..     142     214 .. 0.83
   3 !   19.1   0.0   1.7e-06   8.3e-05     379     459 ..     410     486 .]     339     486 .] 0.71

  Alignments for each domain:
  == domain 1    score: 5.2 bits;  conditional E-value: 0.028
   TIGR03269 302 nvslevkekeifGlvGtsGaGkttlskilaG 332
                 +v+ +v+ +e + l+G  GaGk+tl k +a 
  MMETSP1137-20121227|6515_1  27 GVQWTVMPNERWALLGPNGAGKSTLLKAIAA 57 
                 68999********************999875 PP

  == domain 2    score: 22.5 bits;  conditional E-value: 1.6e-07
   TIGR03269 406 vlkavGfdeekakeildklpdelseGerhrvalaqvlikeprivildeptGtmdpitkvkv 466
                 vl+  Gfd+ +    +d+  d +s G + r+ la++l+ ep ++i+dept  +d  +++ +
  MMETSP1137-20121227|6515_1 150 VLQGLGFDQAE----FDRPCDSFSGGWQMRIGLARLLLSEPELLIMDEPTNHLDASARRWL 206
                 56666666544....68999*********************************99887655 PP

  == domain 3    score: 19.1 bits;  conditional E-value: 1.7e-06
   TIGR03269 379 hrtvlenlteaiglelpdelakrkavivlkavGfdeekakeildklpdelseGerhrvalaqvlikeprivildeptGtmd 459
                   ++  +   +++      ++  +   vl a G++ +k + i+     +ls Ge+ rvala   +   +++ildept  +d
  MMETSP1137-20121227|6515_1 410 QEQLASEYVASVAQSHDASISDERCRSVLGALGLSGDKGRRII----GQLSGGEKARVALATFCLTPCNVLILDEPTNHLD 486
                 4555555555555555566666677778888888888888776....579***************************8876 PP

>> TIGR01846  type_I_sec_HlyB: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.0      0.36        18     475     503 ..      27      55 ..       7      59 .. 0.80
   2 !   23.3   0.0     8e-08   3.9e-06     582     632 ..     155     206 ..     126     230 .. 0.80
   3 !   13.1   0.0   9.4e-05    0.0046     458     503 ..     333     378 ..     315     387 .. 0.88
   4 !   11.9   0.0   0.00021      0.01     592     625 ..     453     486 .]     445     486 .] 0.94

  Alignments for each domain:
  == domain 1    score: 1.3 bits;  conditional E-value: 0.36
   TIGR01846 475 nlsldikaGeviGivGpsGsGkstltkll 503
                  ++  + + e   + Gp G+Gkstl k +
  MMETSP1137-20121227|6515_1  27 GVQWTVMPNERWALLGPNGAGKSTLLKAI 55 
                 566677778888899**********9865 PP

  == domain 2    score: 23.3 bits;  conditional E-value: 8e-08
   TIGR01846 582 Gyet.evgekGaalsGGqrqrialaralvanPrilildeatsaldyeseavi 632
                 G+++ e +    ++sGG + ri lar l+++P +li+de t  ld+ + + +
  MMETSP1137-20121227|6515_1 155 GFDQaEFDRPCDSFSGGWQMRIGLARLLLSEPELLIMDEPTNHLDASARRWL 206
                 55541455556789*******************************9877655 PP

  == domain 3    score: 13.1 bits;  conditional E-value: 9.4e-05
   TIGR01846 458 fenirfrykedspevlsnlsldikaGeviGivGpsGsGkstltkll 503
                 ++   +r+ + s +++++  l++++G  + + Gp G+Gkstl k l
  MMETSP1137-20121227|6515_1 333 LRGACLRHPQGSVDIITDADLEVTKGMRLVLRGPNGAGKSTLVKAL 378
                 566678999999******************************9976 PP

  == domain 4    score: 11.9 bits;  conditional E-value: 0.00021
   TIGR01846 592 aalsGGqrqrialaralvanPrilildeatsald 625
                 ++lsGG + r+ala   ++   +lilde t  ld
  MMETSP1137-20121227|6515_1 453 GQLSGGEKARVALATFCLTPCNVLILDEPTNHLD 486
                 68****************************9998 PP

>> TIGR00954  3a01203: peroxysomal long chain fatty acyl transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   0.0     0.042         2     484     500 ..      40      56 ..      20      58 .. 0.86
   2 !   11.6   0.0    0.0003     0.015     582     613 ..     166     197 ..     152     222 .. 0.92
   3 !   28.2   0.0   2.8e-09   1.4e-07     463     612 ..     341     483 ..     331     485 .. 0.89

  Alignments for each domain:
  == domain 1    score: 4.5 bits;  conditional E-value: 0.042
   TIGR00954 484 iiGPnGcGKsslfRilg 500
                 ++GPnG GKs l + ++
  MMETSP1137-20121227|6515_1  40 LLGPNGAGKSTLLKAIA 56 
                 68**********98876 PP

  == domain 2    score: 11.6 bits;  conditional E-value: 0.0003
   TIGR00954 582 dvLsgGekqRiamARlfyHkPkfavLDEctsA 613
                 d  sgG + Ri++ARl+   P+  ++DE t+ 
  MMETSP1137-20121227|6515_1 166 DSFSGGWQMRIGLARLLLSEPELLIMDEPTNH 197
                 789***************************85 PP

  == domain 3    score: 28.2 bits;  conditional E-value: 2.8e-09
   TIGR00954 463 Pegdv.lieeLsfevksGnhlLiiGPnGcGKsslfRilgelWPvygglltkpeegklFyvPqrPYmslgtlRdqii..YPdssedfkerglsdkdLeqiLeevkLedllereggwdavqdWkdvLsgGekqRiamARlfyHkPkfavLDEcts 612
                 P+g+v +i +  +ev +G+ l++ GPnG GKs l + l+    +++g +  +e+ +l +  q   +++    +q+   Y  s+ + ++  +sd+    +L  + L+     + g  ++      LsgGek R+a+A +     +  +LDE t+
  MMETSP1137-20121227|6515_1 341 PQGSVdIITDADLEVTKGMRLVLRGPNGAGKSTLVKALAATLELRSGDRFEDERLALGFFAQD--LAQELPQEQLAseYVASVAQSHDASISDERCRSVLGALGLS----GDKGRRII----GQLSGGEKARVALATFCLTPCNVLILDEPTN 483
                 77776588999*************************************************997..677777888865599**********************9986....46666666....57*************999999999****998 PP

>> TIGR02314  ABC_MetN: D-methionine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.0      0.33        16      34      52 ..      38      56 ..      23      67 .. 0.81
   2 !   20.4   0.0   9.1e-07   4.4e-05     115     176 ..     141     203 ..     130     213 .. 0.86
   3 ?    6.5   0.0     0.016       0.8      18      52 ..     345     379 ..     338     396 .. 0.84
   4 !   13.3   0.0   0.00014    0.0066     119     172 ..     432     486 .]     419     486 .] 0.85

  Alignments for each domain:
  == domain 1    score: 2.2 bits;  conditional E-value: 0.33
   TIGR02314 34 fgvigasgagkstlircvn 52
                + ++g  gagkstl++ + 
  MMETSP1137-20121227|6515_1 38 WALLGPNGAGKSTLLKAIA 56
                67899**********9875 PP

  == domain 2    score: 20.4 bits;  conditional E-value: 9.1e-07
   TIGR02314 115 ekikrkvtellalvglsdkkdsyps.nlsggqkqrvaiaralasepkvllcdeatsaldpatt 176
                  +i+ +v+ +l  +g+ + +   p+  +sgg + r+ +ar l sep +l+ de t  ld ++ 
  MMETSP1137-20121227|6515_1 141 YEIEARVSRVLQGLGFDQAEFDRPCdSFSGGWQMRIGLARLLLSEPELLIMDEPTNHLDASAR 203
                 589999****999999988877776269*******************************8765 PP

  == domain 3    score: 6.5 bits;  conditional E-value: 0.016
   TIGR02314  18 ikaldnvslfvpkgqifgvigasgagkstlircvn 52 
                 ++ + + +l v kg  + + g  gagkstl++ + 
  MMETSP1137-20121227|6515_1 345 VDIITDADLEVTKGMRLVLRGPNGAGKSTLVKALA 379
                 56678999***********************9865 PP

  == domain 4    score: 13.3 bits;  conditional E-value: 0.00014
   TIGR02314 119 rkvtellalvgls.dkkdsypsnlsggqkqrvaiaralasepkvllcdeatsald 172
                 ++   +l  +gls dk      +lsgg+k rva+a    +   vl+ de t  ld
  MMETSP1137-20121227|6515_1 432 ERCRSVLGALGLSgDKGRRIIGQLSGGEKARVALATFCLTPCNVLILDEPTNHLD 486
                 5666778888886377788999***************99************9997 PP

>> TIGR02323  CP_lyasePhnK: phosphonate C-P lyase system protein PhnK
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.5   0.0    0.0014     0.069      21      50 ..      28      58 ..      15      68 .. 0.83
   2 !   20.9   0.0   9.1e-07   4.4e-05     127     174 ..     151     201 ..     130     221 .. 0.79
   3 !    8.3   0.0    0.0066      0.32      27      57 ..     358     388 ..     342     404 .. 0.86
   4 ?    1.3   0.0       0.9        44     136     169 ..     449     483 ..     438     485 .. 0.82

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 0.0014
   TIGR02323 21 vsf.lypGevlgivGesGsGkstllkalaar 50
                v++ ++p e  +++G  G+Gkstllka+aa 
  MMETSP1137-20121227|6515_1 28 VQWtVMPNERWALLGPNGAGKSTLLKAIAAA 58
                55558999********************984 PP

  == domain 2    score: 20.9 bits;  conditional E-value: 9.1e-07
   TIGR02323 127 lekveidaari.kp.aafsGGmqqrlqiarnlvtrprlvfm.eptGGlvsv 174
                 l+ +  d+a   +p  +fsGG q r+ +ar l+++p l++m ept  l + 
  MMETSP1137-20121227|6515_1 151 LQGLGFDQAEFdRPcDSFSGGWQMRIGLARLLLSEPELLIMdEPTNHLDAS 201
                 55556666665544258****************************998443 PP

  == domain 3    score: 8.3 bits;  conditional E-value: 0.0066
   TIGR02323  27 GevlgivGesGsGkstllkalaarlladaGe 57 
                 G  l + G  G+Gkstl+kalaa l   +G+
  MMETSP1137-20121227|6515_1 358 GMRLVLRGPNGAGKSTLVKALAATLELRSGD 388
                 66788899****************9998887 PP

  == domain 4    score: 1.3 bits;  conditional E-value: 0.9
   TIGR02323 136 rikpaafsGGmqqrlqiarnlvtrprlvfm.eptG 169
                 r    ++sGG + r+ +a   +t  +++++ ept 
  MMETSP1137-20121227|6515_1 449 RRIIGQLSGGEKARVALATFCLTPCNVLILdEPTN 483
                 5555689************9999887766669*96 PP

>> TIGR03797  NHLM_micro_ABC2: NHLM bacteriocin system ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.0   0.0    0.0018      0.09     464     497 ..      20      53 ..       5      59 .. 0.81
   2 !   15.6   0.0     2e-05   0.00096     587     636 ..     166     215 ..     162     225 .. 0.84
   3 !    8.0   0.0    0.0038      0.19     458     499 ..     337     378 ..     322     388 .. 0.87
   4 ?    5.8   0.0     0.018      0.87     587     620 ..     453     486 .]     451     486 .] 0.95

  Alignments for each domain:
  == domain 1    score: 9.0 bits;  conditional E-value: 0.0018
   TIGR03797 464 dgplvLddvslkiepGefvaivGaSGsGKStllr 497
                   ++ L  v  ++ p e  a+ G+ G+GKStll+
  MMETSP1137-20121227|6515_1  20 GDSALLLGVQWTVMPNERWALLGPNGAGKSTLLK 53 
                 45566778999999*******************8 PP

  == domain 2    score: 15.6 bits;  conditional E-value: 2e-05
   TIGR03797 587 gtlSGGQrQRlliAralvrkPrillfDEATSALDNrtQaiVsesleklkv 636
                 ++ SGG + R+ +Ar l + P++l++DE T  LD  + +   + ++  + 
  MMETSP1137-20121227|6515_1 166 DSFSGGWQMRIGLARLLLSEPELLIMDEPTNHLDASARRWLGDYISSYAG 215
                 578*******************************9887776666655555 PP

  == domain 3    score: 8.0 bits;  conditional E-value: 0.0038
   TIGR03797 458 tFrYekdgplvLddvslkiepGefvaivGaSGsGKStllrlL 499
                 + r  + +  ++ d  l++ +G  + + G+ G+GKStl++ L
  MMETSP1137-20121227|6515_1 337 CLRHPQGSVDIITDADLEVTKGMRLVLRGPNGAGKSTLVKAL 378
                 56677788899***************************9977 PP

  == domain 4    score: 5.8 bits;  conditional E-value: 0.018
   TIGR03797 587 gtlSGGQrQRlliAralvrkPrillfDEATSALD 620
                 g+lSGG + R+ +A    +  ++l++DE T  LD
  MMETSP1137-20121227|6515_1 453 GQLSGGEKARVALATFCLTPCNVLILDEPTNHLD 486
                 579***************************9998 PP

>> TIGR01192  chvA: glucan exporter ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.0     0.095       4.6     353     380 ..      27      54 ..       9      68 .. 0.81
   2 !    9.4   0.0    0.0016     0.077     470     506 ..     166     202 ..     123     214 .. 0.85
   3 !    6.8   0.0    0.0097      0.47     351     390 ..     348     387 ..     334     393 .. 0.83
   4 !   16.8   0.0   8.8e-06   0.00043     448     503 ..     427     486 .]     405     486 .] 0.73

  Alignments for each domain:
  == domain 1    score: 3.5 bits;  conditional E-value: 0.095
   TIGR01192 353 dvsfeakagqtvaivgptgagkttlinl 380
                  v +++   +  a++gp gagk+tl+  
  MMETSP1137-20121227|6515_1  27 GVQWTVMPNERWALLGPNGAGKSTLLKA 54 
                 567778888899************9865 PP

  == domain 2    score: 9.4 bits;  conditional E-value: 0.0016
   TIGR01192 470 nrlsggerqrlaiarailknapilvldeatsaldvet 506
                 + +sgg + r+ +ar +l +  +l++de t  ld  +
  MMETSP1137-20121227|6515_1 166 DSFSGGWQMRIGLARLLLSEPELLIMDEPTNHLDASA 202
                 678******************************9765 PP

  == domain 3    score: 6.8 bits;  conditional E-value: 0.0097
   TIGR01192 351 vrdvsfeakagqtvaivgptgagkttlinllqrvydpksg 390
                 + d  +e+  g  + + gp gagk+tl+  l    + +sg
  MMETSP1137-20121227|6515_1 348 ITDADLEVTKGMRLVLRGPNGAGKSTLVKALAATLELRSG 387
                 567788999999****************999877666655 PP

  == domain 4    score: 16.8 bits;  conditional E-value: 8.8e-06
   TIGR01192 448 aaasdfiekrlkgydtlvgergn....rlsggerqrlaiarailknapilvldeatsald 503
                 a+ sd     + g + l g++g     +lsgge+ r+a+a   l    +l+lde t  ld
  MMETSP1137-20121227|6515_1 427 ASISDERCRSVLGALGLSGDKGRriigQLSGGEKARVALATFCLTPCNVLILDEPTNHLD 486
                 44444444555566667778876222269***************************9998 PP

>> TIGR02770  nickel_nikD: nickel import ATP-binding protein NikD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   0.0      0.14         7       4      33 ..      27      56 ..      24      71 .. 0.82
   2 !   15.7   0.0   3.2e-05    0.0016     125     161 ..     167     203 ..     145     214 .. 0.90
   3 ?    4.5   0.0     0.086       4.2       2      37 ..     348     383 ..     347     397 .. 0.89
   4 !   12.2   0.0   0.00039     0.019     125     157 ..     454     486 .]     409     486 .] 0.93

  Alignments for each domain:
  == domain 1    score: 3.8 bits;  conditional E-value: 0.14
   TIGR02770  4 dvnlslkrgkvlalvGesGsGksltalail 33
                +v+ ++  ++  al+G  G+Gks+  +ai 
  MMETSP1137-20121227|6515_1 27 GVQWTVMPNERWALLGPNGAGKSTLLKAIA 56
                577778888999***********9988886 PP

  == domain 2    score: 15.7 bits;  conditional E-value: 3.2e-05
   TIGR02770 125 elsGGmlqRvmialallleaplliaDePttdlDvvvq 161
                  +sGG   R+ +a  ll+e+ lli DePt  lD+ ++
  MMETSP1137-20121227|6515_1 167 SFSGGWQMRIGLARLLLSEPELLIMDEPTNHLDASAR 203
                 579******************************9765 PP

  == domain 3    score: 4.5 bits;  conditional E-value: 0.086
   TIGR02770   2 vqdvnlslkrgkvlalvGesGsGksltalailglld 37 
                 ++d +l++ +g  l l G  G+Gks+  +a+  +l+
  MMETSP1137-20121227|6515_1 348 ITDADLEVTKGMRLVLRGPNGAGKSTLVKALAATLE 383
                 67899*********************9999887775 PP

  == domain 4    score: 12.2 bits;  conditional E-value: 0.00039
   TIGR02770 125 elsGGmlqRvmialallleaplliaDePttdlD 157
                 +lsGG   Rv +a   l+   +li DePt  lD
  MMETSP1137-20121227|6515_1 454 QLSGGEKARVALATFCLTPCNVLILDEPTNHLD 486
                 8************9999*************998 PP

>> TIGR00956  3a01205: pleiotropic drug resistance family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.4   0.0   0.00038     0.019     776     811 ..      22      57 ..      12      69 .. 0.77
   2 ?    4.0   0.0     0.032       1.6     211     244 ..     169     202 ..     165     212 .. 0.81
   3 !    7.3   0.0    0.0032      0.16      62     112 ..     333     383 ..     281     392 .. 0.85
   4 !    8.1   0.0    0.0018      0.09     203     241 ..     448     486 .]     428     486 .] 0.90

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 0.00038
   TIGR00956 776 rvlLdevdGwvkPGkltALmGasGAGkttLlnvLae 811
                   lL  v+  v P +  AL+G  GAGk tLl ++a 
  MMETSP1137-20121227|6515_1  22 SALLLGVQWTVMPNERWALLGPNGAGKSTLLKAIAA 57 
                 567777888888888888888888888888888764 PP

  == domain 2    score: 4.0 bits;  conditional E-value: 0.032
   TIGR00956 211 sGGerkRvsiaevlvakakiqcwDnatrGLDsat 244
                 sGG + R+ +a  l+++++++++D+ t  LD++ 
  MMETSP1137-20121227|6515_1 169 SGGWQMRIGLARLLLSEPELLIMDEPTNHLDASA 202
                 7888888888888888888888888888888874 PP

  == domain 3    score: 7.3 bits;  conditional E-value: 0.0032
   TIGR00956  62 lrklkkekeskkfdilkdvdglikpgelvvvLGrPgsGcstlLksiaskte 112
                 lr +  ++ + ++di+ d d  +  g  +v+ G+ g+G+stl+k++a+++e
  MMETSP1137-20121227|6515_1 333 LRGACLRHPQGSVDIITDADLEVTKGMRLVLRGPNGAGKSTLVKALAATLE 383
                 56666677788999999999999999999999**************99875 PP

  == domain 4    score: 8.1 bits;  conditional E-value: 0.0018
   TIGR00956 203 GndlvRGvsGGerkRvsiaevlvakakiqcwDnatrGLD 241
                 G  ++  +sGGe+ Rv++a  ++++ +++++D+ t  LD
  MMETSP1137-20121227|6515_1 448 GRRIIGQLSGGEKARVALATFCLTPCNVLILDEPTNHLD 486
                 66678889***************************9998 PP

>> TIGR01271  CFTR_protein: cystic fibrosis transmembrane conductor regulator (CFTR)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.8   0.0   0.00098     0.048    1232    1273 ..      22      63 ..      13      70 .. 0.84
   2 !    8.1   0.0    0.0017     0.082     549     581 ..     168     200 ..     159     209 .. 0.75
   3 !    6.1   0.0    0.0066      0.32    1213    1267 ..     324     380 ..     255     389 .. 0.66
   4 ?    5.2   0.0     0.012      0.61    1354    1385 ..     455     486 .]     445     486 .] 0.61

  Alignments for each domain:
  == domain 1    score: 8.8 bits;  conditional E-value: 0.00098
   TIGR01271 1232 ravlqdlsfsveagqrvgllgrtgsgkstllsallrllsteg 1273
                   a+l  + ++v + +r  llg  g+gkstll a+   +  eg
  MMETSP1137-20121227|6515_1   22 SALLLGVQWTVMPNERWALLGPNGAGKSTLLKAIAAAARGEG 63  
                  57888999*************************987666555 PP

  == domain 2    score: 8.1 bits;  conditional E-value: 0.0017
   TIGR01271 549 lsggqrarislaravykdadlylldspfsyldv 581
                 +sgg + ri+lar +  + +l ++d p ++ld 
  MMETSP1137-20121227|6515_1 168 FSGGWQMRIGLARLLLSEPELLIMDEPTNHLDA 200
                 577777777777777777777777777777775 PP

  == domain 3    score: 6.1 bits;  conditional E-value: 0.0066
   TIGR01271 1213 psggqmtv..kdltakyteagravlqdlsfsveagqrvgllgrtgsgkstllsallr 1267
                  ps g + v  ++   ++ ++   ++ d  + v  g r+ l g  g+gkstl+ al  
  MMETSP1137-20121227|6515_1  324 PSCGAVPValRGACLRHPQGSVDIITDADLEVTKGMRLVLRGPNGAGKSTLVKALAA 380 
                  56666544225666677788889999*************************998854 PP

  == domain 4    score: 5.2 bits;  conditional E-value: 0.012
   TIGR01271 1354 lsnghkqlmclarsilskakillldepsafld 1385
                  ls g k  + la   l+ +++l+ldep+ +ld
  MMETSP1137-20121227|6515_1  455 LSGGEKARVALATFCLTPCNVLILDEPTNHLD 486 
                  45555555555555555566666666655555 PP

>> TIGR01257  rim_protein: rim ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.0     0.076       3.7    1961    1987 ..      31      57 ..      18      73 .. 0.83
   2 !   15.1   0.0   8.5e-06   0.00042    2046    2127 ..     142     224 ..     132     238 .. 0.83
   3 ?    4.2   0.0     0.016       0.8    2053    2102 ..     436     486 .]     342     486 .] 0.58

  Alignments for each domain:
  == domain 1    score: 2.0 bits;  conditional E-value: 0.076
   TIGR01257 1961 gvrpgecfgllgvngagktttfkmltg 1987
                   v p e + llg ngagk+t +k ++ 
  MMETSP1137-20121227|6515_1   31 TVMPNERWALLGPNGAGKSTLLKAIAA 57  
                  58899***************9998765 PP

  == domain 2    score: 15.1 bits;  conditional E-value: 8.5e-06
   TIGR01257 2046 eiekvanwsikslglsl.yadrlagtysggnkrklstaialigcpplvlldepttgmdpqarrmlwntivsiiregravvlts 2127
                  eie      ++ lg+     dr + ++sgg + ++  a  l+  p l+++dept  +d  arr l + i s       v  ++
  MMETSP1137-20121227|6515_1  142 EIEARVSRVLQGLGFDQaEFDRPCDSFSGGWQMRIGLARLLLSEPELLIMDEPTNHLDASARRWLGDYISSYAGTVLXVAAAA 224 
                  77877778889999864157999******************************************999988765555555555 PP

  == domain 3    score: 4.2 bits;  conditional E-value: 0.016
   TIGR01257 2053 wsikslglsly.adrlagtysggnkrklstai.aligcpplvlldepttgmd 2102
                    + +lgls     r+ g  sgg+k +++ a  +l+ c  +++ldept  +d
  MMETSP1137-20121227|6515_1  436 SVLGALGLSGDkGRRIIGQLSGGEKARVALATfCLTPC-NVLILDEPTNHLD 486 
                  44567777764145789999999999988775145555.5667899998765 PP

>> TIGR00957  MRP_assoc_pro: multi drug resistance-associated protein (MRP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.0     0.067       3.3     631     686 ..       4      57 ..       1      66 [. 0.82
   2 !    6.4   0.0    0.0052      0.25     750     799 ..     157     206 ..     149     225 .. 0.85
   3 !   11.2   0.0   0.00019    0.0092     637     790 ..     331     484 ..     323     486 .] 0.67

  Alignments for each domain:
  == domain 1    score: 2.7 bits;  conditional E-value: 0.067
   TIGR00957 631 dgegnsitvknatftwardepptlngltlsipegalvavvgqvgcgkssllsalla 686
                 d +g +i+++n    wa d    l g++ ++      a++g+ g gks+ll a+ a
  MMETSP1137-20121227|6515_1   4 DAGGAAISIRNFD-LWAGD-SALLLGVQWTVMPNERWALLGPNGAGKSTLLKAIAA 57 
                 6678999999965.48865.56788999999999999**************99876 PP

  == domain 2    score: 6.4 bits;  conditional E-value: 0.0052
   TIGR00957 750 drteigekgvnlsggqkqrvslaravysdadiyllddplsavdahvakhi 799
                 d++e       +sgg + r+ lar + s+ ++ ++d+p   +da   + +
  MMETSP1137-20121227|6515_1 157 DQAEFDRPCDSFSGGWQMRIGLARLLLSEPELLIMDEPTNHLDASARRWL 206
                 677777777789*****************************999876655 PP

  == domain 3    score: 11.2 bits;  conditional E-value: 0.00019
   TIGR00957 637 itvknatftwardepptlngltlsipegalvavvgqvgcgkssllsallaemdkvegkva.....lkgsvayvpqqawiqndslrenilfgkaleekyykavleac.alladleilpsgdrteigekgvnlsggqkqrvslaravysdadiyllddplsa 790
                 ++++ a +   +++   +   +l++ +g  + + g+ g gks+l+ al a ++   g          g  a    q   q++   e +    + ++       e c ++l  l +     r  ig    +lsgg+k rv+la    + +++ +ld+p   
  MMETSP1137-20121227|6515_1 331 VALRGACLRHPQGSVDIITDADLEVTKGMRLVLRGPNGAGKSTLVKALAATLELRSGDRFederlALGFFAQDLAQELPQEQLASEYVASVAQSHDASI--SDERCrSVLGALGLSGDKGRRIIG----QLSGGEKARVALATFCLTPCNVLILDEPTNH 484
                 5667777777888888889999**************************999876666544000004444444444555555555555543333332222..223342456666654434444555....59*************************9765 PP

>> TIGR00630  uvra: excinuclease ABC subunit A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       6.4   3.1e+02     639     654 ..      41      56 ..      37      60 .. 0.81
   2 !    9.0   0.0    0.0015     0.074     463     517 ..     142     195 ..     110     207 .. 0.70
   3 ?    2.1   0.0      0.18       8.8     623     652 ..     348     377 ..     334     394 .. 0.77
   4 !    7.4   0.0    0.0045      0.22     471     517 ..     438     482 ..     409     486 .] 0.71

  Alignments for each domain:
  == domain 1    score: -3.0 bits;  conditional E-value: 6.4
   TIGR00630 639 tGvsgsGkstLindiL 654
                  G+ g+GkstL++ i 
  MMETSP1137-20121227|6515_1  41 LGPNGAGKSTLLKAIA 56 
                 58999*****998875 PP

  == domain 2    score: 9.0 bits;  conditional E-value: 0.0015
   TIGR00630 463 eikerlk.fLvdvGLdYLsleraaetlsGGeaqrirlatqiGsgLvGvlYvlDePs 517
                 ei+ r++ +L+ +G+d  + +r  +++sGG + ri la  + s+    l ++DeP 
  MMETSP1137-20121227|6515_1 142 EIEARVSrVLQGLGFDQAEFDRPCDSFSGGWQMRIGLARLLLSEP--ELLIMDEPT 195
                 666666426677777777777777777777777777777776664..366677765 PP

  == domain 3    score: 2.1 bits;  conditional E-value: 0.18
   TIGR00630 623 lkdidvsiplglltvitGvsgsGkstLind 652
                 + d d+++  g+  v+ G+ g+GkstL++ 
  MMETSP1137-20121227|6515_1 348 ITDADLEVTKGMRLVLRGPNGAGKSTLVKA 377
                 556677777788888888888888888864 PP

  == domain 4    score: 7.4 bits;  conditional E-value: 0.0045
   TIGR00630 471 LvdvGLdYLsleraaetlsGGeaqrirlatqiGsgLvGvlYvlDePs 517
                 L  +GL+  +  r +  lsGGe+ r++lat   +     + +lDeP 
  MMETSP1137-20121227|6515_1 438 LGALGLSGDKGRRIIGQLSGGEKARVALATFCLTP-C-NVLILDEPT 482
                 55566666677777788888888888888764332.2.234666664 PP

>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.0     0.023       1.1      27      43 ..      39      55 ..      33      65 .. 0.87
   2 ?    4.2   1.7     0.031       1.5     389     448 ..     248     306 ..     230     319 .. 0.41
   3 ?    2.6   0.0     0.091       4.4      30      43 ..     365     378 ..     351     382 .. 0.80
   4 !    6.1   0.0    0.0085      0.42    1089    1121 ..     452     480 ..     446     486 .] 0.78

  Alignments for each domain:
  == domain 1    score: 4.6 bits;  conditional E-value: 0.023
   TIGR02168 27 giVGPNGcGKSNivDAi 43
                +  GPNG GKS  + Ai
  MMETSP1137-20121227|6515_1 39 ALLGPNGAGKSTLLKAI 55
                789********999998 PP

  == domain 2    score: 4.2 bits;  conditional E-value: 0.031
   TIGR02168 389 aeleeqlaslnaelerleaeleqleerrerlkqeieelekkleeaeaelkelqeeleele 448
                 ae ee++a+++a++e +++e ++l++  +r+ ++ +++ +++++   +l++l+++++e e
  MMETSP1137-20121227|6515_1 248 AEREERQARARATVEAQQREAKRLQDFIDRMGAKASKA-SQAKDRAGKLSKLESQMAEAE 306
                 33333333333333333333333333333333333222.222223333333333333332 PP

  == domain 3    score: 2.6 bits;  conditional E-value: 0.091
   TIGR02168  30 GPNGcGKSNivDAi 43 
                 GPNG GKS  v A+
  MMETSP1137-20121227|6515_1 365 GPNGAGKSTLVKAL 378
                 ********999997 PP

  == domain 4    score: 6.1 bits;  conditional E-value: 0.0085
   TIGR02168 1089 lslLSGGEKALtAlaLlFAifkvkPaPfciLDE 1121
                  + +LSGGEKA +Ala     f + P    iLDE
  MMETSP1137-20121227|6515_1  452 IGQLSGGEKARVALA----TFCLTPCNVLILDE 480 
                  789**********86....67777777777776 PP

>> TIGR00611  recf: DNA replication and repair protein RecF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.1   0.0    0.0028      0.14      26      49 ..      38      61 ..      27      64 .. 0.83
   2 ?   -2.4   0.0         9   4.4e+02     305     343 ..     188     226 ..     174     241 .. 0.78
   3 !   11.0   0.0   0.00076     0.037      15      51 ..     349     386 ..     346     395 .. 0.89

  Alignments for each domain:
  == domain 1    score: 9.1 bits;  conditional E-value: 0.0028
   TIGR00611 26 nvlvGeNgqGKtnlleaiyylall 49
                 +l+G+Ng GK  ll+ai  +a +
  MMETSP1137-20121227|6515_1 38 WALLGPNGAGKSTLLKAIAAAARG 61
                489***************998765 PP

  == domain 2    score: -2.4 bits;  conditional E-value: 9
   TIGR00611 305 illlDDvaseLDeqrreaLaelleekgeqvfvtaisldd 343
                 +l++D     LD++ r+ L   +++    v+  a+ ++ 
  MMETSP1137-20121227|6515_1 188 LLIMDEPTNHLDASARRWLGDYISSYAGTVLXVAAAANS 226
                 799999999********9999998887777766666555 PP

  == domain 3    score: 11.0 bits;  conditional E-value: 0.00076
   TIGR00611  15 eevdlelspgvn.vlvGeNgqGKtnlleaiyylallrS 51 
                 +++dle+ +g+  vl G+Ng GK  l++a+     lrS
  MMETSP1137-20121227|6515_1 349 TDADLEVTKGMRlVLRGPNGAGKSTLVKALAATLELRS 386
                 689999999999899***************99888887 PP

>> TIGR00618  sbcc: exonuclease SbcC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.0   2.6e-05    0.0013      21      53 ..      29      61 ..      11      70 .. 0.85
   2 ?   -1.4   2.5       1.7        83     416     478 ..     245     304 ..     233     319 .. 0.58
   3 ?    5.8   0.0     0.011      0.55      31      48 ..     362     379 ..     354     398 .. 0.87

  Alignments for each domain:
  == domain 1    score: 14.6 bits;  conditional E-value: 2.6e-05
   TIGR00618 21 dftalglklfvicGktGaGKtsLldAItyALYg 53
                  t  +++  +  G++GaGK++Ll AI+ A  g
  MMETSP1137-20121227|6515_1 29 QWTVMPNERWALLGPNGAGKSTLLKAIAAAARG 61
                567788999999****************88655 PP

  == domain 2    score: -1.4 bits;  conditional E-value: 1.7
   TIGR00618 416 etseeralqgklaaakkqeelqqkrlelkelaiekelqieklkkaelqelaqklkekeqqlkd 478
                 + ++er++++  a+a+++ e+qq+ ++ ++ +i      +  + ++    a kl  +e q ++
  MMETSP1137-20121227|6515_1 245 KYLAEREERQ--ARARATVEAQQREAKRLQDFIDRMGAKASKASQAK-DRAGKLSKLESQMAE 304
                 4455555554..56777777777777777777766544333333322.223344444444444 PP

  == domain 3    score: 5.8 bits;  conditional E-value: 0.011
   TIGR00618  31 vicGktGaGKtsLldAIt 48 
                 v  G++GaGK++L+ A +
  MMETSP1137-20121227|6515_1 362 VLRGPNGAGKSTLVKALA 379
                 678************987 PP

>> TIGR02169  SMC_prok_A: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.0      0.12       5.7      28      43 ..      40      55 ..      35      61 .. 0.87
   2 ?    1.5   2.1      0.19       9.4     171     222 ..     252     303 ..     234     318 .. 0.34
   3 !    5.9   0.0    0.0093      0.46      27      53 ..     362     388 ..     350     415 .. 0.80
   4 ?    1.7   0.0      0.16         8    1067    1111 ..     446     486 .]     444     486 .] 0.71

  Alignments for each domain:
  == domain 1    score: 2.2 bits;  conditional E-value: 0.12
   TIGR02169 28 isGpNGSGKSNiiDal 43
                  GpNG+GKS ++ a+
  MMETSP1137-20121227|6515_1 40 LLGPNGAGKSTLLKAI 55
                57********999888 PP

  == domain 2    score: 1.5 bits;  conditional E-value: 0.19
   TIGR02169 171 ekkekaleeLeeveeriervelvieevrqqlerLekerekaerYkeLkkekr 222
                 e+ ++a++ +e+ +++ +r++  i+ +  +  + ++ +++a +  +L+++  
  MMETSP1137-20121227|6515_1 252 ERQARARATVEAQQREAKRLQDFIDRMGAKASKASQAKDRAGKLSKLESQMA 303
                 1111111111111111111111111111111111111111111111111111 PP

  == domain 3    score: 5.9 bits;  conditional E-value: 0.0093
   TIGR02169  27 visGpNGSGKSNiiDallFaLGlsssk 53 
                 v  GpNG+GKS ++ al   L l s  
  MMETSP1137-20121227|6515_1 362 VLRGPNGAGKSTLVKALAATLELRSGD 388
                 678***********9998888777655 PP

  == domain 4    score: 1.7 bits;  conditional E-value: 0.16
   TIGR02169 1067 dKavqrleamSGGEKsltALsfifAiQrykPspfYafDEvDmfLD 1111
                  dK  + +  +SGGEK+ +AL+       ++P  + ++DE   +LD
  MMETSP1137-20121227|6515_1  446 DKGRRIIGQLSGGEKARVALATF----CLTPCNVLILDEPTNHLD 486 
                  566666888***********843....356666666666666665 PP

>> TIGR00017  cmk: cytidylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   0.0     0.025       1.2       7      24 ..      40      57 ..      36      61 .. 0.87
   2 !   11.1   0.0    0.0011     0.051       3      28 ..     359     384 ..     357     392 .. 0.87

  Alignments for each domain:
  == domain 1    score: 6.6 bits;  conditional E-value: 0.025
   TIGR00017  7 iDGPsaaGKstvakalae 24
                + GP +aGKst+ ka+a 
  MMETSP1137-20121227|6515_1 40 LLGPNGAGKSTLLKAIAA 57
                56**************97 PP

  == domain 2    score: 11.1 bits;  conditional E-value: 0.0011
   TIGR00017   3 liiaiDGPsaaGKstvakalaeklgy 28 
                 + + + GP +aGKst+ kala  l++
  MMETSP1137-20121227|6515_1 359 MRLVLRGPNGAGKSTLVKALAATLEL 384
                 556778***************99986 PP

>> TIGR03420  DnaA_homol_Hda: DnaA regulatory inactivator Hda
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.4   0.0    0.0015     0.072      41      67 ..      38      64 ..      14      80 .. 0.84
   2 ?    7.3   0.0     0.013      0.65      35      63 ..     355     383 ..     341     392 .. 0.83

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 0.0015
   TIGR03420 41 lylwGesgsGksHLLqAacaaaeeagk 67
                  l G++g Gks LL+A++aaa+ +g+
  MMETSP1137-20121227|6515_1 38 WALLGPNGAGKSTLLKAIAAAARGEGS 64
                5689****************9988775 PP

  == domain 2    score: 7.3 bits;  conditional E-value: 0.013
   TIGR03420  35 akaerllylwGesgsGksHLLqAacaaae 63 
                  +++  l l G++g Gks L++A++a++e
  MMETSP1137-20121227|6515_1 355 VTKGMRLVLRGPNGAGKSTLVKALAATLE 383
                 56677889****************99876 PP

>> TIGR00750  lao: LAO/AO transport system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   0.0     0.012       0.6      39      63 ..      40      64 ..      32      70 .. 0.88
   2 !    8.7   0.0    0.0038      0.19      30      59 ..     354     383 ..     336     390 .. 0.75

  Alignments for each domain:
  == domain 1    score: 7.0 bits;  conditional E-value: 0.012
   TIGR00750 39 ltGvPGaGkstlveklieelrrrGl 63
                l G  GaGkstl+++++  +r +G 
  MMETSP1137-20121227|6515_1 40 LLGPNGAGKSTLLKAIAAAARGEGS 64
                67999*************9999996 PP

  == domain 2    score: 8.7 bits;  conditional E-value: 0.0038
   TIGR00750  30 ktGrahvvGltGvPGaGkstlveklieelr 59 
                 +  +  ++ l G  GaGkstlv++l+ +l 
  MMETSP1137-20121227|6515_1 354 EVTKGMRLVLRGPNGAGKSTLVKALAATLE 383
                 55667788899**************98875 PP

>> TIGR03263  guanyl_kin: guanylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   0.0     0.048       2.4       6      23 ..      40      57 ..      37      62 .. 0.86
   2 !   10.2   0.0    0.0018      0.09       4      23 ..     361     380 ..     358     385 .. 0.87

  Alignments for each domain:
  == domain 1    score: 5.6 bits;  conditional E-value: 0.048
   TIGR03263  6 isgpsGvGKstlvkklle 23
                + gp G+GKstl+k++ +
  MMETSP1137-20121227|6515_1 40 LLGPNGAGKSTLLKAIAA 57
                679***********9876 PP

  == domain 2    score: 10.2 bits;  conditional E-value: 0.0018
   TIGR03263   4 ivisgpsGvGKstlvkklle 23 
                 +v+ gp G+GKstlvk+l +
  MMETSP1137-20121227|6515_1 361 LVLRGPNGAGKSTLVKALAA 380
                 799*************9976 PP

>> TIGR00929  VirB4_CagE: type IV secretion/conjugal transfer ATPase, VirB4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.0   0.0    0.0016     0.078     442     462 ..      40      60 ..      35      65 .. 0.90
   2 ?   -2.7   0.2       5.4   2.6e+02     140     186 ..     246     291 ..     236     308 .. 0.68
   3 ?    6.1   0.0     0.012      0.58     443     461 ..     364     382 ..     349     390 .. 0.82

  Alignments for each domain:
  == domain 1    score: 9.0 bits;  conditional E-value: 0.0016
   TIGR00929 442 IfGptgsGKTvllnfllaqlq 462
                 ++Gp+g+GK++ll+ ++a+++
  MMETSP1137-20121227|6515_1  40 LLGPNGAGKSTLLKAIAAAAR 60 
                 78****************987 PP

  == domain 2    score: -2.7 bits;  conditional E-value: 5.4
   TIGR00929 140 ereeleeskrekleksikaleeilenllekleeygaealkeydkagl 186
                 + +e ee+++++++  ++a ++  ++l+ +++++ga+a k  + ++ 
  MMETSP1137-20121227|6515_1 246 YLAEREERQARARA-TVEAQQREAKRLQDFIDRMGAKASKASQAKDR 291
                 45666666666666.57777777777777777777777776665554 PP

  == domain 3    score: 6.1 bits;  conditional E-value: 0.012
   TIGR00929 443 fGptgsGKTvllnfllaql 461
                  Gp+g+GK++l++ l+a l
  MMETSP1137-20121227|6515_1 364 RGPNGAGKSTLVKALAATL 382
                 4**************9986 PP

>> TIGR02322  phosphon_PhnN: phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.0   0.0    0.0048      0.23       4      27 ..      38      61 ..      36      65 .. 0.85
   2 ?    6.6   0.0     0.026       1.3       5      27 ..     362     384 ..     358     393 .. 0.82

  Alignments for each domain:
  == domain 1    score: 9.0 bits;  conditional E-value: 0.0048
   TIGR02322  4 ilvvGpsGaGKDtlldlararlad 27
                ++++Gp GaGK tll++ +a+ ++
  MMETSP1137-20121227|6515_1 38 WALLGPNGAGKSTLLKAIAAAARG 61
                6799***********998877665 PP

  == domain 2    score: 6.6 bits;  conditional E-value: 0.026
   TIGR02322   5 lvvGpsGaGKDtlldlararlad 27 
                 ++ Gp GaGK tl+++++a+l+ 
  MMETSP1137-20121227|6515_1 362 VLRGPNGAGKSTLVKALAATLEL 384
                 677************99988765 PP

>> TIGR00041  DTMP_kinase: thymidylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.0       0.2       9.5      11      29 ..      42      60 ..      38      66 .. 0.83
   2 !    9.8   0.0    0.0026      0.13       3      29 ..     357     383 ..     355     392 .. 0.87

  Alignments for each domain:
  == domain 1    score: 3.7 bits;  conditional E-value: 0.2
   TIGR00041 11 GidGaGKTtqlellkkllk 29
                G +GaGK+t+l+++++  +
  MMETSP1137-20121227|6515_1 42 GPNGAGKSTLLKAIAAAAR 60
                999*********9998765 PP

  == domain 2    score: 9.8 bits;  conditional E-value: 0.0026
   TIGR00041   3 kgkfiviEGidGaGKTtqlellkkllk 29 
                 kg+  v+ G +GaGK+t++++l+++l+
  MMETSP1137-20121227|6515_1 357 KGMRLVLRGPNGAGKSTLVKALAATLE 383
                 678899*****************9987 PP

>> TIGR00150  HI0065_YjeE: ATPase, YjeE family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.0      0.38        19      27      44 ..      40      57 ..      35      63 .. 0.86
   2 !   10.4   0.0    0.0019     0.092      22      46 ..     358     382 ..     344     387 .. 0.84

  Alignments for each domain:
  == domain 1    score: 3.0 bits;  conditional E-value: 0.38
   TIGR00150 27 LkGdlGaGKttlvkgllk 44
                L G  GaGK tl+k+++ 
  MMETSP1137-20121227|6515_1 40 LLGPNGAGKSTLLKAIAA 57
                67888*********9975 PP

  == domain 2    score: 10.4 bits;  conditional E-value: 0.0019
   TIGR00150  22 atvvlLkGdlGaGKttlvkgllkgl 46 
                 ++ ++L+G  GaGK tlvk+l+  l
  MMETSP1137-20121227|6515_1 358 GMRLVLRGPNGAGKSTLVKALAATL 382
                 55689****************9987 PP

>> TIGR03689  pup_AAA: proteasome ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.0      0.16       7.8     220     244 ..      39      63 ..      28      73 .. 0.79
   2 !    8.7   0.0    0.0027      0.13     205     246 ..     345     388 ..     334     403 .. 0.79

  Alignments for each domain:
  == domain 1    score: 2.9 bits;  conditional E-value: 0.16
   TIGR03689 220 llyGPPGcGktliakavanslaekv 244
                  l GP G+Gk  + ka+a++   + 
  MMETSP1137-20121227|6515_1  39 ALLGPNGAGKSTLLKAIAAAARGEG 63 
                 588**************99865544 PP

  == domain 2    score: 8.7 bits;  conditional E-value: 0.0027
   TIGR03689 205 kelyreydlkpPkGv..llyGPPGcGktliakavanslaekvae 246
                  ++ ++ dl+  kG+  +l GP G+Gk  + ka+a++l  +  +
  MMETSP1137-20121227|6515_1 345 VDIITDADLEVTKGMrlVLRGPNGAGKSTLVKALAATLELRSGD 388
                 56777888999999633789*****************9877666 PP

>> TIGR03185  DNA_S_dndD: DNA sulfur modification protein DndD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.7   0.0    0.0095      0.46      23      51 ..      31      58 ..       8      66 .. 0.65
   2 ?    2.0   0.7      0.25        12     228     282 ..     250     304 ..     233     323 .. 0.55
   3 ?    5.0   0.1     0.031       1.5      21      49 ..     352     379 ..     348     383 .. 0.81

  Alignments for each domain:
  == domain 1    score: 6.7 bits;  conditional E-value: 0.0095
   TIGR03185 23 svssekpiiLlgglNGaGKTTlLdaiqLa 51
                +v+++    Ll g NGaGK TlL+ai  a
  MMETSP1137-20121227|6515_1 31 TVMPNERWALL-GPNGAGKSTLLKAIAAA 58
                44555566666.57***********9765 PP

  == domain 2    score: 2.0 bits;  conditional E-value: 0.25
   TIGR03185 228 laqeiaalrkeleeaerkleslekkfeseGgelaeereelerqqkeleaklkavr 282
                  ++++a +r  +e  +r+ ++l++ + + G+++ +  +   r  k  + +++ ++
  MMETSP1137-20121227|6515_1 250 REERQARARATVEAQQREAKRLQDFIDRMGAKASKASQAKDRAGKLSKLESQMAE 304
                 3456666667777777777777776777666654443333333332222333222 PP

  == domain 3    score: 5.0 bits;  conditional E-value: 0.031
   TIGR03185  21 dLsvssekpiiLlgglNGaGKTTlLdaiq 49 
                 dL+v +    +L  g NGaGK Tl++a+ 
  MMETSP1137-20121227|6515_1 352 DLEVTKGMRLVL-RGPNGAGKSTLVKALA 379
                 788888877765.789**********985 PP

>> TIGR01526  nadR_NMN_Atrans: nicotinamide-nucleotide adenylyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   0.0     0.042       2.1     165     187 ..      38      60 ..      33      66 .. 0.86
   2 ?    6.8   0.0     0.015      0.73     168     190 ..     364     386 ..     357     431 .. 0.89

  Alignments for each domain:
  == domain 1    score: 5.3 bits;  conditional E-value: 0.042
   TIGR01526 165 vailGgestGkstLvrklaekln 187
                  a+lG++ +GkstL +++a+  +
  MMETSP1137-20121227|6515_1  38 WALLGPNGAGKSTLLKAIAAAAR 60 
                 589****************9766 PP

  == domain 2    score: 6.8 bits;  conditional E-value: 0.015
   TIGR01526 168 lGgestGkstLvrklaeklntts 190
                  G++ +GkstLv++la++l+ +s
  MMETSP1137-20121227|6515_1 364 RGPNGAGKSTLVKALAATLELRS 386
                 5999*************997655 PP

>> TIGR00455  apsK: adenylylsulfate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.1      0.44        21      23      42 ..      40      59 ..      37      69 .. 0.83
   2 !    9.3   0.0    0.0036      0.18      15      43 ..     355     383 ..     344     391 .. 0.85

  Alignments for each domain:
  == domain 1    score: 2.5 bits;  conditional E-value: 0.44
   TIGR00455 23 ltGlsgsGkstianalekkL 42
                l G+ g+Gkst+ +a++ + 
  MMETSP1137-20121227|6515_1 40 LLGPNGAGKSTLLKAIAAAA 59
                6799*********9998765 PP

  == domain 2    score: 9.3 bits;  conditional E-value: 0.0036
   TIGR00455  15 kqksvvlWltGlsgsGkstianalekkLe 43 
                   k++ l l G+ g+Gkst+ +al+  Le
  MMETSP1137-20121227|6515_1 355 VTKGMRLVLRGPNGAGKSTLVKALAATLE 383
                 56889999****************99886 PP

>> TIGR02640  gas_vesic_GvpN: gas vesicle protein GvpN
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.0      0.36        18      26      44 ..      40      58 ..      34      61 .. 0.87
   2 !    9.0   0.0    0.0041       0.2      20      46 ..     357     383 ..     345     428 .. 0.89

  Alignments for each domain:
  == domain 1    score: 2.6 bits;  conditional E-value: 0.36
   TIGR02640 26 lrGPaGtGktslalhvakk 44
                l GP G+Gk +l  ++a+ 
  MMETSP1137-20121227|6515_1 40 LLGPNGAGKSTLLKAIAAA 58
                78**********9999875 PP

  == domain 2    score: 9.0 bits;  conditional E-value: 0.0041
   TIGR02640  20 sgypvhlrGPaGtGktslalhvakkrd 46 
                  g+ + lrGP G+Gk +l  ++a++++
  MMETSP1137-20121227|6515_1 357 KGMRLVLRGPNGAGKSTLVKALAATLE 383
                 577889*****************9875 PP

>> TIGR01351  adk: adenylate kinases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   0.0     0.092       4.5       2      21 ..      38      57 ..      37      69 .. 0.87
   2 ?    7.3   0.0     0.015      0.71       1      25 [.     360     384 ..     360     419 .. 0.87

  Alignments for each domain:
  == domain 1    score: 4.7 bits;  conditional E-value: 0.092
   TIGR01351  2 lvllGpPGsGKGTqakrlae 21
                + llGp G+GK+T  k +a 
  MMETSP1137-20121227|6515_1 38 WALLGPNGAGKSTLLKAIAA 57
                679***********999986 PP

  == domain 2    score: 7.3 bits;  conditional E-value: 0.015
   TIGR01351   1 rlvllGpPGsGKGTqakrlaeklgl 25 
                 rlvl Gp G+GK+T  k la +l+l
  MMETSP1137-20121227|6515_1 360 RLVLRGPNGAGKSTLVKALAATLEL 384
                 689****************999876 PP

>> TIGR01194  cyc_pep_trnsptr: cyclic peptide transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.0      0.57        28     371     387 ..      39      55 ..      19      63 .. 0.80
   2 !    8.3   0.0    0.0033      0.16     347     396 ..     339     387 ..     283     486 .] 0.76

  Alignments for each domain:
  == domain 1    score: 0.9 bits;  conditional E-value: 0.57
   TIGR01194 371 yivGenGcGkstlikll 387
                  ++G nG Gkstl+k +
  MMETSP1137-20121227|6515_1  39 ALLGPNGAGKSTLLKAI 55 
                 5789**********976 PP

  == domain 2    score: 8.3 bits;  conditional E-value: 0.0033
   TIGR01194 347 kdvessegfalGpidlriasGelvyivGenGcGkstliklllGlyipqeG 396
                 + +++s    +   dl +++G  + + G nG Gkstl+k l      ++G
  MMETSP1137-20121227|6515_1 339 RHPQGSVDI-ITDADLEVTKGMRLVLRGPNGAGKSTLVKALAATLELRSG 387
                 566666654.56689******9999**************99876666666 PP

>> TIGR00602  rad24: checkpoint protein rad24
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.0      0.58        29     115     131 ..      40      56 ..      31      59 .. 0.85
   2 ?    8.8   0.0    0.0022      0.11     105     134 ..     353     382 ..     346     388 .. 0.84

  Alignments for each domain:
  == domain 1    score: 0.8 bits;  conditional E-value: 0.58
   TIGR00602 115 itGPsGCgKsTvikiLs 131
                 + GP G gKsT +k ++
  MMETSP1137-20121227|6515_1  40 LLGPNGAGKSTLLKAIA 56 
                 46***********9876 PP

  == domain 2    score: 8.8 bits;  conditional E-value: 0.0022
   TIGR00602 105 LeskkkriLLitGPsGCgKsTvikiLsKel 134
                 Le+ k   L + GP G gKsT +k L+  l
  MMETSP1137-20121227|6515_1 353 LEVTKGMRLVLRGPNGAGKSTLVKALAATL 382
                 77777777999***************9766 PP

>> TIGR00231  small_GTP: small GTP-binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   0.0     0.055       2.7       8      27 ..      40      59 ..      36      69 .. 0.82
   2 ?    5.0   0.0     0.084       4.1       2      24 ..     357     379 ..     356     385 .. 0.88

  Alignments for each domain:
  == domain 1    score: 5.6 bits;  conditional E-value: 0.055
   TIGR00231  8 ivGhvdvGKstLlnsllknk 27
                ++G  ++GKstLl+ ++   
  MMETSP1137-20121227|6515_1 40 LLGPNGAGKSTLLKAIAAAA 59
                78999********9998665 PP

  == domain 2    score: 5.0 bits;  conditional E-value: 0.084
   TIGR00231   2 keikivivGhvdvGKstLlnsll 24 
                 k +++v+ G  ++GKstL + l+
  MMETSP1137-20121227|6515_1 357 KGMRLVLRGPNGAGKSTLVKALA 379
                 77899999**********99886 PP

>> TIGR01242  26Sp45: 26S proteasome subunit P45 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.0      0.17       8.3     159     180 ..      38      59 ..      27      62 .. 0.83
   2 ?    6.3   0.0      0.02      0.96     151     179 ..     351     381 ..     337     385 .. 0.77

  Alignments for each domain:
  == domain 1    score: 3.2 bits;  conditional E-value: 0.17
   TIGR01242 159 vllyGppGtGktllakavaeet 180
                   l Gp G+Gk+ l ka+a  +
  MMETSP1137-20121227|6515_1  38 WALLGPNGAGKSTLLKAIAAAA 59 
                 5689**************9865 PP

  == domain 2    score: 6.3 bits;  conditional E-value: 0.02
   TIGR01242 151 vGieppkGv..llyGppGtGktllakavaee 179
                   +e  kG+  +l Gp G+Gk+ l ka+a  
  MMETSP1137-20121227|6515_1 351 ADLEVTKGMrlVLRGPNGAGKSTLVKALAAT 381
                 55677777532789**************975 PP

>> TIGR00634  recN: DNA repair protein RecN
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.1       4.5   2.2e+02      27      43 ..      40      56 ..      38      65 .. 0.84
   2 ?   -1.4   0.4       3.6   1.7e+02     247     279 ..     274     306 ..     223     315 .. 0.50
   3 ?   10.9   0.0   0.00068     0.033      10      44 ..     345     380 ..     343     437 .. 0.82
   4 ?   -2.5   0.0       8.1   3.9e+02     442     455 ..     456     469 ..     444     480 .. 0.76

  Alignments for each domain:
  == domain 1    score: -1.7 bits;  conditional E-value: 4.5
   TIGR00634 27 ltGETGaGKsividale 43
                l G  GaGKs +++a+ 
  MMETSP1137-20121227|6515_1 40 LLGPNGAGKSTLLKAIA 56
                66889**********96 PP

  == domain 2    score: -1.4 bits;  conditional E-value: 3.6
   TIGR00634 247 salleslaearaelaseidaslkelaekveeal 279
                   +  +++  +a  a++  ++l++l  +++ea+
  MMETSP1137-20121227|6515_1 274 FIDRMGAKASKASQAKDRAGKLSKLESQMAEAE 306
                 122222222222233333444444444444444 PP

  == domain 3    score: 10.9 bits;  conditional E-value: 0.00068
   TIGR00634  10 lalieeleveferglt.vltGETGaGKsividalel 44 
                 + +i ++++e  +g+  vl G  GaGKs +++al  
  MMETSP1137-20121227|6515_1 345 VDIITDADLEVTKGMRlVLRGPNGAGKSTLVKALAA 380
                 779************769**************9753 PP

  == domain 4    score: -2.5 bits;  conditional E-value: 8.1
   TIGR00634 442 SGGELSRvmLalkv 455
                 SGGE  Rv La   
  MMETSP1137-20121227|6515_1 456 SGGEKARVALATFC 469
                 9*********9654 PP

>> TIGR01243  CDC48: AAA family ATPase, CDC48 subfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.0      0.12       5.8     486     509 ..      34      57 ..      27      64 .. 0.58
   2 ?    4.9   0.0     0.029       1.4     203     234 ..     347     380 ..     335     385 .. 0.70

  Alignments for each domain:
  == domain 1    score: 2.9 bits;  conditional E-value: 0.12
   TIGR01243 486 ppkgvllfgppgtgktllakavat 509
                 p     l gp g+gk+ l ka+a+
  MMETSP1137-20121227|6515_1  34 PNERWALLGPNGAGKSTLLKAIAA 57 
                 444444555555555555555554 PP

  == domain 2    score: 4.9 bits;  conditional E-value: 0.029
   TIGR01243 203 lfeklgieppkgv..llygppgtgktllakavan 234
                 ++    +e  kg+  +l gp g+gk+ l ka+a 
  MMETSP1137-20121227|6515_1 347 IITDADLEVTKGMrlVLRGPNGAGKSTLVKALAA 380
                 5666667788886225669999999999999986 PP

>> TIGR03499  FlhF: flagellar biosynthesis protein FlhF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   0.0     0.052       2.5     201     222 ..      38      59 ..      29      66 .. 0.83
   2 ?    3.4   5.4      0.27        13      99     227 ..     249     387 ..     221     390 .. 0.75

  Alignments for each domain:
  == domain 1    score: 5.8 bits;  conditional E-value: 0.052
   TIGR03499 201 iaLvGptGvGKTTTlAKLAarf 222
                  aL+Gp G GK T l  +Aa +
  MMETSP1137-20121227|6515_1  38 WALLGPNGAGKSTLLKAIAAAA 59 
                 69***********999999876 PP

  == domain 2    score: 3.4 bits;  conditional E-value: 0.27
   TIGR03499  99 aqeaekkleeae.eelrkelkalkellekqlselal....eeedperakllkklleagvseelarelleklke.....kedaeeareklreaLekklsvkkeedeilekggviaLvGptGvGKTTTlAKLAarfvlehg 227
                 ++e++++ ++a+ e+ ++e k l++ ++++ +++++    + + ++ +kl++++ ea+     ar+  + + +      + + ++r +++++ ++++++ +  d   +kg  ++L Gp G GK T +  LAa + l+ g
  MMETSP1137-20121227|6515_1 249 EREERQARARATvEAQQREAKRLQDFIDRMGAKASKasqaKDRAGKLSKLESQMAEAERLVVGARQRPKLTLApppscGAVPVALRGACLRHPQGSVDIITDADLEVTKGMRLVLRGPNGAGKSTLVKALAATLELRSG 387
                 22222222222258888999999999999998887777677777777777777777777666666666666667788888899999999999999999888888888999999************9999***9988855 PP

>> TIGR00606  rad50: rad50
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.0      0.23        11      33      49 ..      40      56 ..      38      64 .. 0.83
   2 ?   -2.0   0.0       2.2   1.1e+02    1212    1239 ..     174     201 ..     173     203 .. 0.91
   3 ?    3.6   0.0     0.044       2.2      32      48 ..     362     378 ..     356     384 .. 0.91
   4 ?    6.7   0.0    0.0053      0.26    1212    1237 ..     461     486 .]     420     486 .] 0.81

  Alignments for each domain:
  == domain 1    score: 1.3 bits;  conditional E-value: 0.23
   TIGR00606 33 lvGPnGaGkttiiealk 49
                l GPnGaGk t++ a+ 
  MMETSP1137-20121227|6515_1 40 LLGPNGAGKSTLLKAIA 56
                68**********99876 PP

  == domain 2    score: -2.0 bits;  conditional E-value: 2.2
   TIGR00606 1212 irlalaevfclnCgiialdePttnldre 1239
                  +r+ la  +  +  ++ +dePt  ld +
  MMETSP1137-20121227|6515_1  174 MRIGLARLLLSEPELLIMDEPTNHLDAS 201 
                  699999999999**************76 PP

  == domain 3    score: 3.6 bits;  conditional E-value: 0.044
   TIGR00606  32 llvGPnGaGkttiieal 48 
                 +l GPnGaGk t++ al
  MMETSP1137-20121227|6515_1 362 VLRGPNGAGKSTLVKAL 378
                 689***********998 PP

  == domain 4    score: 6.7 bits;  conditional E-value: 0.0053
   TIGR00606 1212 irlalaevfcln.CgiialdePttnld 1237
                   r+ala +fcl  C ++ ldePt  ld
  MMETSP1137-20121227|6515_1  461 ARVALA-TFCLTpCNVLILDEPTNHLD 486 
                  499**9.788755***********998 PP

>> TIGR00763  lon: ATP-dependent protease La
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.0      0.27        13     357     377 ..      39      59 ..      35      62 .. 0.90
   2 ?   -2.6   0.3       6.1     3e+02     250     292 ..     265     305 ..     240     308 .. 0.68
   3 ?    4.6   0.0      0.04         2     351     378 ..     356     383 ..     348     387 .. 0.89

  Alignments for each domain:
  == domain 1    score: 1.8 bits;  conditional E-value: 0.27
   TIGR00763 357 clvGPPGVGKtSlaksiAkal 377
                 +l GP G GK+ l k+iA a 
  MMETSP1137-20121227|6515_1  39 ALLGPNGAGKSTLLKAIAAAA 59 
                 589***************985 PP

  == domain 2    score: -2.6 bits;  conditional E-value: 6.1
   TIGR00763 250 kkdelieklkekleelklpeevlkviekeleklelleasssef 292
                 ++   +++l+  ++++  +++   ++++   kl++le++++e+
  MMETSP1137-20121227|6515_1 265 QR--EAKRLQDFIDRMGAKASKASQAKDRAGKLSKLESQMAEA 305
                 22..234677777777788888888888888888888888876 PP

  == domain 3    score: 4.6 bits;  conditional E-value: 0.04
   TIGR00763 351 lkgkilclvGPPGVGKtSlaksiAkaln 378
                 +kg  l+l GP G GK+ l k++A +l+
  MMETSP1137-20121227|6515_1 356 TKGMRLVLRGPNGAGKSTLVKALAATLE 383
                 78999*******************9886 PP

>> TIGR02173  cyt_kin_arch: putative cytidylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.1       3.2   1.5e+02       7      22 ..      42      57 ..      39      65 .. 0.88
   2 ?    7.6   0.0     0.015      0.74       1      27 [.     359     385 ..     359     392 .. 0.90

  Alignments for each domain:
  == domain 1    score: 0.1 bits;  conditional E-value: 3.2
   TIGR02173  7 GpPGsGkttvakilae 22
                Gp G+Gk+t+ k +a 
  MMETSP1137-20121227|6515_1 42 GPNGAGKSTLLKAIAA 57
                999*********9996 PP

  == domain 2    score: 7.6 bits;  conditional E-value: 0.015
   TIGR02173   1 miivisGpPGsGkttvakilaeklslk 27 
                 m +v+ Gp G+Gk+t+ k la +l+l+
  MMETSP1137-20121227|6515_1 359 MRLVLRGPNGAGKSTLVKALAATLELR 385
                 667899*****************9997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (486 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       312  (0.0760605); expected 82.0 (0.02)
Passed bias filter:                      258  (0.0628961); expected 82.0 (0.02)
Passed Vit filter:                       121  (0.0294978); expected 4.1 (0.001)
Passed Fwd filter:                        84  (0.0204778); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              84  [number of targets reported over threshold]
# CPU time: 1.70u 0.17s 00:00:01.87 Elapsed: 00:00:01.76
# Mc/sec: 364.47
//
Query:       MMETSP1137-20121227|6516_1  [L=181]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.3e-15   53.3   0.0    7.8e-15   52.8   0.0    1.2  1  TIGR01068 thioredoxin: thioredoxin
    6.3e-12   43.6   0.0      9e-12   43.1   0.0    1.2  1  TIGR01126 pdi_dom: protein disulfide-isomerase domain
    3.9e-09   34.4   0.0      5e-09   34.0   0.0    1.1  1  TIGR01130 ER_PDI_fam: protein disulfide isomerases
     0.0035   14.8   0.0     0.0052   14.2   0.0    1.3  1  TIGR00385 dsbE: periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily
     0.0035   13.8   0.0     0.0044   13.5   0.0    1.1  1  TIGR00424 APS_reduc: 5'-adenylylsulfate reductase, thioredoxin-independent
  ------ inclusion threshold ------
      0.019   13.3   0.0      0.039   12.3   0.0    1.5  2  TIGR02196 GlrX_YruB: glutaredoxin-like protein, YruB-family


Domain annotation for each model (and alignments):
>> TIGR01068  thioredoxin: thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.8   0.0   1.1e-17   7.8e-15       9      82 ..      64     136 ..      56     148 .. 0.86

  Alignments for each domain:
  == domain 1    score: 52.8 bits;  conditional E-value: 1.1e-17
   TIGR01068   9 tvassdklvlvDfwAeWCgpCkmlaPvleelakeleekvkvvKlnvdeeqeiaakygirsiPtlllfkngkevk 82 
                  ++++++l++ Df A+WCgpC+++ P++++l+++++ +v++v l+ d+ +    +  + s Pt  +f+   e++
  MMETSP1137-20121227|6516_1  64 LLEDESRLIVADFGATWCGPCQAIKPLFAQLSEKYK-DVTFVSLDADQLPVAMGENMVDSYPTFKFFRYSAEAD 136
                 566778899***********************8887.7****************************99877665 PP

>> TIGR01126  pdi_dom: protein disulfide-isomerase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.1   0.0   1.3e-14     9e-12       7      83 ..      62     134 ..      57     151 .. 0.86

  Alignments for each domain:
  == domain 1    score: 43.1 bits;  conditional E-value: 1.3e-14
   TIGR01126   7 delvldenkdvlvefyaPWCGhCkklaPeyeklakelkkeeekvkiakvdataekelaskfkvsgfPtlkffkkgkk 83 
                 d l+ de++ ++ +f a WCG C+++ P + +l++++k    +v+   +da++  +++ +  v+++Pt kff+   +
  MMETSP1137-20121227|6516_1  62 DVLLEDESRLIVADFGATWCGPCQAIKPLFAQLSEKYK----DVTFVSLDADQLPVAMGENMVDSYPTFKFFRYSAE 134
                 44556667777779***********************9....499***************************97765 PP

>> TIGR01130  ER_PDI_fam: protein disulfide isomerases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.0   0.0   7.3e-12     5e-09      17      85 ..      68     132 ..      54     142 .. 0.56

  Alignments for each domain:
  == domain 1    score: 34.0 bits;  conditional E-value: 7.3e-12
   TIGR01130  17 enelvLveFYAPWCGHCksLaPeYekAAeelkkkspkvklakvDateekelaqkygvsGyPtLkifrng 85 
                 e+ l+++ F A WCG C++++P ++    +l++k  +v+ ++ Da +      +  v  yPt k+fr +
  MMETSP1137-20121227|6516_1  68 ESRLIVADFGATWCGPCQAIKPLFA----QLSEKYKDVTFVSLDADQLPVAMGENMVDSYPTFKFFRYS 132
                 2334445566666666666666654....3555555566666666655555555666666666666543 PP

>> TIGR00385  dsbE: periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.0   7.6e-06    0.0052      64      99 ..      70     107 ..      50     126 .. 0.75

  Alignments for each domain:
  == domain 1    score: 14.2 bits;  conditional E-value: 7.6e-06
   TIGR00385  64 klvLlnvwasWCptCraehplLkelakeg..lrivgvd 99 
                 +l++ ++ a+WC++C+a  pl  +l+++   +  v++d
  MMETSP1137-20121227|6516_1  70 RLIVADFGATWCGPCQAIKPLFAQLSEKYkdVTFVSLD 107
                 455667889*****************885224444444 PP

>> TIGR00424  APS_reduc: 5'-adenylylsulfate reductase, thioredoxin-independent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   0.0   6.5e-06    0.0044     378     440 ..      75     133 ..      54     143 .. 0.81

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 6.5e-06
   TIGR00424 378 vlyapwcpfcqameasyvelaeklagsgvkvakfradgdqkefakqelqlgsfptillfpkrs 440
                  + a wc  cqa++  + +l+ek       v+    d dq   a  e  ++s+pt  +f   +
  MMETSP1137-20121227|6516_1  75 DFGATWCGPCQAIKPLFAQLSEKY----KDVTFVSLDADQLPVAMGENMVDSYPTFKFFRYSA 133
                 35699*********9999999886....56888899********************9997654 PP

>> TIGR02196  GlrX_YruB: glutaredoxin-like protein, YruB-family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   5.7e-05     0.039       7      31 ..      78     102 ..      73     127 .. 0.78
   2 ?   -3.4   0.0       4.7   3.2e+03      51      65 ..     137     152 ..     130     154 .. 0.64

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 5.7e-05
   TIGR02196   7 tpwCppCkkakeyLkskgiafeeid 31 
                  +wC+pC+++k  + +   ++++++
  MMETSP1137-20121227|6516_1  78 ATWCGPCQAIKPLFAQLSEKYKDVT 102
                 68************99998888876 PP

  == domain 2    score: -3.4 bits;  conditional E-value: 4.7
   TIGR02196  51 vPvivig.ekivvGFd 65 
                  Pv+  +  k  +G++
  MMETSP1137-20121227|6516_1 137 LPVVGADiAKSSSGYS 152
                 5666655555577776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (181 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        77  (0.0187713); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.19u 0.17s 00:00:00.36 Elapsed: 00:00:00.34
# Mc/sec: 702.65
//
Query:       MMETSP1137-20121227|6517_1  [L=313]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (313 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        89  (0.0216967); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.16s 00:00:00.40 Elapsed: 00:00:00.32
# Mc/sec: 1291.02
//
Query:       MMETSP1137-20121227|6518_1  [L=231]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (231 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       101  (0.0246221); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.11s 00:00:00.32 Elapsed: 00:00:00.35
# Mc/sec: 871.13
//
Query:       MMETSP1137-20121227|6519_1  [L=65]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (65 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        16  (0.00390054); expected 82.0 (0.02)
Passed bias filter:                       16  (0.00390054); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.13s 00:00:00.24 Elapsed: 00:00:00.23
# Mc/sec: 373.01
//
Query:       MMETSP1137-20121227|6520_1  [L=230]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.5e-56  188.9   5.3      3e-56  188.7   3.6    1.0  1  TIGR00846 caca2: calcium/proton exchanger
    2.7e-55  185.8   3.4    3.1e-55  185.6   2.4    1.0  1  TIGR00378 cax: calcium/proton exchanger
     0.0001   19.3   7.1     0.0001   19.3   4.9    1.4  1  TIGR00367 TIGR00367: K+-dependent Na+/Ca+ exchanger homolog


Domain annotation for each model (and alignments):
>> TIGR00846  caca2: calcium/proton exchanger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  188.7   3.6   2.2e-59     3e-56      10     212 ..      33     229 ..      25     230 .] 0.94

  Alignments for each domain:
  == domain 1    score: 188.7 bits;  conditional E-value: 2.2e-59
   TIGR00846  10 vllaskleilliavplaiilalvgvsqtlvfllallgiiplAavvsrateeLaarlGetlGgllnatvgnavelIisllalkegkvevvrasllgsilsnlllvlGlslllGGiknirveqefdlkaaqvnlallllailslvlPallkaaknseksaevqdsklelsvgiaivllilYvvfLvfqlvtHrelFeaeeeadse 212
                    + +l+il+++ pl  i  + g++q+lvf++all+i p A+++s+ te+La+++ +tlGgllnat+gn +elI+sl+al+ g  ++v+ sllgsilsnlllvlG +++ GG+ ++   q+f+ +  +vn++ll+l+++s ++P+ll +++++    e+  s+l++s+ i+++ll+ Y+ f++fql +H +l+++++++d++
  MMETSP1137-20121227|6520_1  33 LFFQNTLNILMLCTPLCAIYVYNGWNQSLVFVFALLAIAPFAERLSFVTEQLAMHTSDTLGGLLNATFGNVTELIVSLFALQRGMLRIVQVSLLGSILSNLLLVLGCAFFAGGVSFKS--QKFNKTSCSVNSGLLVLGLMSIMFPMLLDMTHEE---IEM-GSSLTVSRCISVLLLLTYCCFIYFQLYSHTHLYNDDDDDDDD 229
                 5667899************************************************************************************************************955..*****************************99886...333.399*********************************999976 PP

>> TIGR00378  cax: calcium/proton exchanger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  185.6   2.4   2.3e-58   3.1e-55       2     187 ..      43     228 ..      41     230 .] 0.97

  Alignments for each domain:
  == domain 1    score: 185.6 bits;  conditional E-value: 2.3e-58
   TIGR00378   2 lvfvPlsliasllqlsetvvfllaflaiiplaaflgrateelavvaGpriGGllnatfGnavelivslialkeGlveivkasltGsvlgnlllvlGlafflGGlkykeqefnqlaarlnssllalavvalliPaalevlsvGveeakllnlsvgvsivlilvyvlalyfklgthralyevqeaeqt 187
                 +   Pl  i  + ++++++vf++a lai p+a  l+  te+la+   +++GGllnatfGn +elivsl+al++G+++iv+ sl+Gs+l+nlllvlG aff GG+ +k q+fn+++   ns+ll+l++++++ P  l+++   +e ++ l +s+++s++l+l y  ++yf+l +h+ ly+ ++++++
  MMETSP1137-20121227|6520_1  43 MLCTPLCAIYVYNGWNQSLVFVFALLAIAPFAERLSFVTEQLAMHTSDTLGGLLNATFGNVTELIVSLFALQRGMLRIVQVSLLGSILSNLLLVLGCAFFAGGVSFKSQKFNKTSCSVNSGLLVLGLMSIMFPMLLDMTHEEIEMGSSLTVSRCISVLLLLTYCCFIYFQLYSHTHLYNDDDDDDD 228
                 5668******************************************************************************************************************************************************************************99887765 PP

>> TIGR00367  TIGR00367: K+-dependent Na+/Ca+ exchanger homolog
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   4.9   7.5e-08    0.0001      22     143 ..      73     211 ..      59     226 .. 0.50

  Alignments for each domain:
  == domain 1    score: 19.3 bits;  conditional E-value: 7.5e-08
   TIGR00367  22 lvksltviaeklgi.sdlviGvTvvaagtSlPElftsliavliaksdigigtvvGSnifNillvlglcallsreilvltkllkr.dvsf...llvvlillliflldgv.............lesllllvllflyvvylkf 143
                 + ++l+ ++e+l +   + +G  + a  + + El++sl a   +   i+    +GS + N+llvlg ca+++  +  ++++ ++ ++s+   llv  ++ ++f +                +++  ++ ll++y  ++ f
  MMETSP1137-20121227|6520_1  73 FAERLSFVTEQLAMhTSDTLGGLLNATFGNVTELIVSLFALQRGMLRIVQVSLLGSILSNLLLVLG-CAFFAGGVSFKSQKFNKtSCSVnsgLLVLGLMSIMFPMLLDmtheeiemgssltVSRCISVLLLLTYCCFIYF 211
                 444555555555442223444445555555666666666666666666666666666666666666.5566655555555533312222111222223333332111133555565555555555555566666555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (230 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       157  (0.038274); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.24u 0.16s 00:00:00.40 Elapsed: 00:00:00.43
# Mc/sec: 705.99
//
Query:       MMETSP1137-20121227|6521_1  [L=95]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (95 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        37  (0.00901999); expected 82.0 (0.02)
Passed bias filter:                       36  (0.00877621); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.15s 00:00:00.28 Elapsed: 00:00:00.27
# Mc/sec: 464.41
//
Query:       MMETSP1137-20121227|6522_1  [L=202]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (202 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       137  (0.0333983); expected 82.0 (0.02)
Passed bias filter:                      104  (0.0253535); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.10s 00:00:00.31 Elapsed: 00:00:00.94
# Mc/sec: 283.64
//
Query:       MMETSP1137-20121227|6523_1  [L=137]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (137 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        46  (0.011214); expected 82.0 (0.02)
Passed bias filter:                       40  (0.00975134); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.12s 00:00:00.28 Elapsed: 00:00:00.80
# Mc/sec: 226.03
//
Query:       MMETSP1137-20121227|6524_1  [L=749]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   5.2e-222  735.3   0.4   6.4e-222  735.0   0.3    1.1  1  TIGR00170 leuC: 3-isopropylmalate dehydratase, large subunit
    2.4e-94  314.1   0.7      2e-55  185.9   0.0    2.2  2  TIGR01343 hacA_fam: homoaconitate hydratase family protein
    1.2e-84  282.3   0.4    2.1e-49  166.1   0.0    2.3  2  TIGR02086 IPMI_arch: 3-isopropylmalate dehydratase, large subunit
    2.6e-74  248.5   0.1      1e-41  141.1   0.0    2.4  2  TIGR02083 LEU2: 3-isopropylmalate dehydratase, large subunit
    4.3e-67  223.4   0.0    6.2e-67  222.9   0.0    1.2  1  TIGR00171 leuD: 3-isopropylmalate dehydratase, small subunit
    5.7e-55  184.5   4.3      2e-29  100.1   0.5    2.9  2  TIGR01342 acon_putative: putative aconitate hydratase
    1.3e-53  180.2   0.5    2.9e-25   86.5   0.0    3.5  3  TIGR00139 h_aconitase: homoaconitase
    1.4e-45  153.7   1.7    3.7e-27   92.8   0.2    3.0  3  TIGR01340 aconitase_mito: aconitate hydratase, mitochondrial
    2.2e-35  119.5   0.0    1.5e-26   90.2   0.0    2.2  2  TIGR01341 aconitase_1: aconitate hydratase 1
      4e-25   85.7   0.6    1.2e-19   67.6   0.4    2.3  2  TIGR02333 2met_isocit_dHY: 2-methylisocitrate dehydratase, Fe/S-dependent
    4.1e-24   82.9   0.0    1.8e-18   64.6   0.0    2.6  2  TIGR02087 LEUD_arch: 3-isopropylmalate dehydratase, small subunit
    1.8e-21   74.3   0.0    1.9e-19   67.7   0.0    2.4  1  TIGR02084 leud: 3-isopropylmalate dehydratase, small subunit
    1.3e-20   70.7   2.1    1.8e-18   63.6   0.1    2.8  3  TIGR00117 acnB: aconitate hydratase 2


Domain annotation for each model (and alignments):
>> TIGR00170  leuC: 3-isopropylmalate dehydratase, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  735.0   0.3    2e-224  6.4e-222      22     466 .]       1     455 [.       1     455 [. 0.98

  Alignments for each domain:
  == domain 1    score: 735.0 bits;  conditional E-value: 2e-224
   TIGR00170  22 tdllyidrhlvhevtspqafeglraagrkvrrvdktlatldhnistesr......dveikeekaklqvkeleknvkefgvklfdlssaeqgivhvvgpeegltlpgktivcgdshtathgafgalafgigtsevehvlatqtlkqaraktlkievegklakgitakdiilaiigkigvaggtgyvvefageairdlsmeermtvcnmaieagakagliapdettfeyvkdrkyapk..gkefekavaywktlktdegakfdkvvtleakdispqvtwgtnpgqvlsvneevpdpksladpvekasaekalaylglep..gtklkdikvdkvfigsctnsriedlraaaevvkgkkvadnvklalvvpgsglvkkqaekegldkifleagfewre.agcslclgmnndvldeyercastsnrnfegrqgkgarthlvspamaaaaavagkfvdirel 466
                 t llyidrhlvhevtspqafegl +agr+vrr+d+tl t+dhni+t+sr      + +i ee++++qv +leknv++f +++f++ +++qgivh++gpe+g+t+pg t vcgdshtathgafgalafgigtsevehvlat tl q++ak+++i v+g+l  g+++kd++l i g ig+aggtg+ +efag air+lsme+rm++cnmaieaga+agliapdettfey+k+r++ p+    e+e a+ayw+tl +dega++dk+v+++a di+p+vtwgt+p++  ++++ vp+p+  +dp +ka++e+alay+gl    g++l++i++dkvfigsctn+ried+ra a+v+kgkkva+nv+ a+vvpgsg+vk+qae+egldk++++agf+wr+ +gcs+cl+mn d+l+ +ercastsnrnfegrqg+g+rthlvsp maaaaav+gk+ d+r+l
  MMETSP1137-20121227|6524_1   1 TALLYIDRHLVHEVTSPQAFEGLSVAGRPVRRPDCTLVTVDHNIPTTSRkkfksvESFIEEEQSRMQVMTLEKNVQAFNLPYFGMGDKRQGIVHIIGPEQGFTVPGSTCVCGDSHTATHGAFGALAFGIGTSEVEHVLATSTLPQKKAKNMRILVDGELGAGVASKDVVLHICGIIGTAGGTGCTIEFAGSAIRSLSMEARMSICNMAIEAGARAGLIAPDETTFEYLKGRPMVPRpdSPEWEAALAYWRTLVSDEGAVYDKEVVIDAADIAPTVTWGTSPQDTAPITGVVPSPEMATDPARKAGMERALAYMGLSDrvGQPLDSIAIDKVFIGSCTNGRIEDIRAVASVAKGKKVAPNVQ-AMVVPGSGMVKEQAEEEGLDKVLIDAGFDWRRmPGCSMCLAMNADKLGMHERCASTSNRNFEGRQGAGGRTHLVSPIMAAAAAVTGKLSDVRKL 455
                 579*********************************************99999888899******************************************************************************************************************************************************************************98722569**************************************************************************752279****************************************.******************************7549**********************************************************85 PP

>> TIGR01343  hacA_fam: homoaconitate hydratase family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  185.9   0.0   6.3e-58     2e-55      24     282 ..       5     290 ..       2     294 .. 0.89
   2 !  126.1   0.3   8.8e-40   2.8e-37     282     410 ..     323     451 ..     304     453 .. 0.92

  Alignments for each domain:
  == domain 1    score: 185.9 bits;  conditional E-value: 6.3e-58
   TIGR01343  24 evdlvlvhditaplaikaleelgidkvfdpekivivvdhavPaktika........aeaqklvrefvkkkGikyfy.......dvgeGiahqvlaekglvkPgelvvgadshtctyGalgafatGvGstdlalaiatGkvWlkvPesikvkltGklkpgvtakdvvLevikeiGvdGatykavefegetvkkldveerltlanlaieaGgktGiieadektleylkerake.............kakvvksdedaeyakeveidvsklepvvavPhevdnvkevsev 282
                  +d  lvh++t+p a++ l   g   v+ p+ + + vdh++P++++k          e+q  ++    +k ++ f+       d+++Gi+h + +e+g+ +Pg++ v +dsht+t+Ga+ga+a G+G+ ++ +++at  +  k  + +++ ++G+l  gv +kdvvL++++ iG+ G t  ++ef g  ++ l++e r+ ++n+aieaG+++G+i++de+t eylk r                 ++ + sde+a y kev id++++ p+v++  ++++ +++++v
  MMETSP1137-20121227|6524_1   5 YIDRHLVHEVTSPQAFEGLSVAG-RPVRRPDCTLVTVDHNIPTTSRKKfksvesfiEEEQSRMQVMTLEKNVQAFNlpyfgmgDKRQGIVHIIGPEQGFTVPGSTCVCGDSHTATHGAFGALAFGIGTSEVEHVLATSTLPQKKAKNMRILVDGELGAGVASKDVVLHICGIIGTAGGTGCTIEFAGSAIRSLSMEARMSICNMAIEAGARAGLIAPDETTFEYLKGRPMVprpdspeweaalaYWRTLVSDEGAVYDKEVVIDAADIAPTVTWGTSPQDTAPITGV 290
                 5899****************999.99****************98876411112121234445555555555555533333344788********************************************************************************************************************************************995445689999**999889999*****************************999999876 PP

  == domain 2    score: 126.1 bits;  conditional E-value: 8.8e-40
   TIGR01343 282 vegievdqvfiGsCtnGrledLreaakilkgrkvaedvrliviPaskkvykqalkeGlieifveaGavv.stpgCgpClGahqGvLaegevCistsnrnfkGrmGdkeaeiyLasPavaaasavkGriad 410
                 ++ i +d+vfiGsCtnGr+ed+r++a + kg+kva++v+ +v+P s  v +qa +eGl +++++aG      pgC+ Cl +    L+  e+C stsnrnf+Gr+G    + +L sP++aaa+av G+++d
  MMETSP1137-20121227|6524_1 323 LDSIAIDKVFIGSCTNGRIEDIRAVASVAKGKKVAPNVQAMVVPGSGMVKEQAEEEGLDKVLIDAGFDWrRMPGCSMCLAMNADKLGMHERCASTSNRNFEGRQGA-GGRTHLVSPIMAAAAAVTGKLSD 451
                 67899*************************************************************875268*********************************7.57899**************9987 PP

>> TIGR02086  IPMI_arch: 3-isopropylmalate dehydratase, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  166.1   0.0   6.7e-52   2.1e-49      26     280 ..       6     290 ..       2     293 .. 0.86
   2 !  113.7   0.3   5.6e-36   1.8e-33     281     410 ..     324     453 ..     317     454 .. 0.94

  Alignments for each domain:
  == domain 1    score: 166.1 bits;  conditional E-value: 6.7e-52
   TIGR02086  26 vDlvmvhDgtgplvikalrelgakvekkekivlvfDhvvPaptvea........aelqkeire.....fakelgikvf...dvgeGichqvlvekgyakpgkvvvgaDshtttsGalgafatGlGatDvalalatGktWlkvPesikveleGkleekvtakDvileivkelgadgatykaieftgeeiealsldeRltlsnlaveagakaglvepdeetleylkkrrge..............frilkadedakyeeeieidlseleplvavPhsvdnvkeveev 280
                 +D  +vh+ t+p++++ l  +g  v++++  ++ +Dh++P+++ +          e q  ++       ++ ++++ f   d  +Gi+h +  e+g+  pg   v +Dsht+t+Ga+ga+a+G+G+++v  +lat  +  k  + +++ ++G+l   v +kDv+l+i++ +g+ g t+ +ief g+ i++ls++ R++++n+a+eaga+agl+ pde+t eylk r                 +r l++de+a y++e+ id++++ p+v+   s+++  +++ v
  MMETSP1137-20121227|6524_1   6 IDRHLVHEVTSPQAFEGLSVAGRPVRRPDCTLVTVDHNIPTTSRKKfksvesfiEEEQSRMQVmtlekNVQAFNLPYFgmgDKRQGIVHIIGPEQGFTVPGSTCVCGDSHTATHGAFGALAFGIGTSEVEHVLATSTLPQKKAKNMRILVDGELGAGVASKDVVLHICGIIGTAGGTGCTIEFAGSAIRSLSMEARMSICNMAIEAGARAGLIAPDETTFEYLKGRPMVprpdspeweaalayWRTLVSDEGAVYDKEVVIDAADIAPTVTWGTSPQDTAPITGV 290
                 677899**********************************976443111111112233333330000134444455443334568******************************************************************************************************************************************9876556688999***************************************9999998766 PP

  == domain 2    score: 113.7 bits;  conditional E-value: 5.6e-36
   TIGR02086 281 egteidqvfiGsCtnGRledlkiaaeilegrevhkdvrlivvPasrkvyekaleeGlietlveaGaii.ltpgCGPClGahlGvladgevivsttnRnfkGRmGspkaeiYLasPavaavsaveGeitdpe 410
                 + + id+vfiGsCtnGR+ed++++a + +g++v+++v+ +vvP s  v e+a eeGl ++l++aG      pgC  Cl      l+  e++ st+nRnf+GR G+   + +L sP +aa++av+G+++d +
  MMETSP1137-20121227|6524_1 324 DSIAIDKVFIGSCTNGRIEDIRAVASVAKGKKVAPNVQAMVVPGSGMVKEQAEEEGLDKVLIDAGFDWrRMPGCSMCLAMNADKLGMHERCASTSNRNFEGRQGAG-GRTHLVSPIMAAAAAVTGKLSDVR 453
                 5689*************************************************************965268*********************************86.6889****************9865 PP

>> TIGR02083  LEU2: 3-isopropylmalate dehydratase, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  141.1   0.0   3.2e-44     1e-41      27     283 ..       6     288 ..       2     295 .. 0.83
   2 !  104.6   0.2   3.8e-33   1.2e-30     289     418 ..     325     454 ..     309     455 .. 0.94

  Alignments for each domain:
  == domain 1    score: 141.1 bits;  conditional E-value: 3.2e-44
   TIGR02083  27 ldlvlgndvttplaikafkelgvkkvfdkdkvalvldhftpn...kdikaae.....qvklirefakekeiek....yfeig..elgvehallpekglvvsgdliigadshtctygalgafatgvgstdlavamatgkawfkvpeaikfvlkgklkdyvsakdlilkiigkigvdgalykslefsgeglkelsvddrltianmaieagaktgifevdektieyvkgr.............akrelkiykadedakyervieidlselepqvafphlpentkeid 283
                 +d  l  +vt+p a + +  +  + v  +d   + +dh  p    k  k+ e     +   ++ ++ ek+++     yf +g  + g+ h++ pe+g+ v+g   +  dsht t+ga+ga+a g+g++++  ++at     k  + +++ + g+l   v++kd++l+i g+ig  g    ++ef+g ++++ls++ r++i+nmaieaga++g++ +de t ey kgr             a    +   +de a y +++ id  ++ p+v++   p++t +i 
  MMETSP1137-20121227|6524_1   6 IDRHLVHEVTSPQAFEGLSVA-GRPVRRPDCTLVTVDHNIPTtsrKKFKSVEsfieeEQSRMQVMTLEKNVQAfnlpYFGMGdkRQGIVHIIGPEQGFTVPGSTCVCGDSHTATHGAFGALAFGIGTSEVEHVLATSTLPQKKAKNMRILVDGELGAGVASKDVVLHICGIIGTAGGTGCTIEFAGSAIRSLSMEARMSICNMAIEAGARAGLIAPDETTFEYLKGRpmvprpdspeweaALAYWRTLVSDEGAVYDKEVVIDAADIAPTVTWGTSPQDTAPIT 288
                 677788999999999988655.57899999999999**877533366776642211122334556777888753344799994457********************************************************************************************************************************************933333222111111123466779****************************999876 PP

  == domain 2    score: 104.6 bits;  conditional E-value: 3.8e-33
   TIGR02083 289 eikidqvvigsctngrledlrlaaeilkgkkvakevrliilpasqkvylealkeglleifieagavv.stptcgpclgghmgilaegeravsttnrnfvgrmghpksevylaspavaaasaikgkiaspee 418
                  i id+v igsctngr+ed+r  a++ kgkkva++v+ +++p+s  v  +a +egl +++i+ag      p c  cl      l   er+ st+nrnf gr g    + +l sp +aaa+a++gk+++ ++
  MMETSP1137-20121227|6524_1 325 SIAIDKVFIGSCTNGRIEDIRAVASVAKGKKVAPNVQAMVVPGSGMVKEQAEEEGLDKVLIDAGFDWrRMPGCSMCLAMNADKLGMHERCASTSNRNFEGRQGA-GGRTHLVSPIMAAAAAVTGKLSDVRK 454
                 799*************************************************************865278*********************************7.5789*****************99876 PP

>> TIGR00171  leuD: 3-isopropylmalate dehydratase, small subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  222.9   0.0     2e-69   6.2e-67       1     187 [.     497     690 ..     497     691 .. 0.92

  Alignments for each domain:
  == domain 1    score: 222.9 bits;  conditional E-value: 2e-69
   TIGR00171   1 mkefkkltGlvvpldkanvdtdaiipkqflkkikrtGfgkhlfyewryld.....ekGke...pnpefvlnvpqyqgasillarenfGcGssrehapwalkdyGfkviiapsfadifynnsfkngllpirlseeeveellalvknkglkltvdleaqkvkdsegkvysfeidefrkhcllnGldeigltlqkede 187
                 m +f++l+G ++pld  nvdtd iipk++lk+ikrtG+g  +f e ry +      kG e   + ++fvln +qy+++ il++++nfGcGssrehapw+++ +G++ ii+ sfadifynn+fkng+lp++ls+ +v el+a  +   + ++vdl++qkv   +g +  fe+d+frkhcl+nGld+iglt++k  e
  MMETSP1137-20121227|6524_1 497 MPKFVNLKGTAAPLDLQNVDTDMIIPKEYLKTIKRTGLGFAAFAELRYENpvevaRKGAEvaiERSDFVLNKQQYRNSVILVTGDNFGCGSSREHAPWSIAGFGIRCIISTSFADIFYNNCFKNGMLPLKLSRPQVLELMADAE-ALKPIEVDLPSQKVIRHDGSTFDFEVDSFRKHCLINGLDDIGLTMHKMAE 690
                 67899*******************************************7422222567663335789***********************************************************************998865.56789***************************************998655 PP

>> TIGR01342  acon_putative: putative aconitate hydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.6   0.1   6.3e-27     2e-24      94     281 ..      90     290 ..      78     294 .. 0.90
   2 !  100.1   0.5   6.2e-32     2e-29     282     582 ..     324     628 ..     317     648 .. 0.80

  Alignments for each domain:
  == domain 1    score: 83.6 bits;  conditional E-value: 6.3e-27
   TIGR01342  94 ngichqvhker.fakpgktllgsdshtptagglgqlaigaggldvavamageayylkmpkvvnvrlkgklpewvtakdvilellrrlsvkgglgkvleytgegvkelsvperatitnmgaelgatssifpsdeitedylaaf...dreee.........fvelladadaeydevivvdlselepliaepsspdnvvpvrev 281
                 +gi h +  e+ f+ pg t +  dsht t g +g la g g  +v   +a  +   k  k + + ++g+l   v++kdv+l +   +   gg g  +e+ g  +++ls+  r +i nm  e ga + ++  de t +yl+      r +          +  l +d  a yd+++v+d +++ p ++  +sp++  p+  v
  MMETSP1137-20121227|6524_1  90 QGIVHIIGPEQgFTVPGSTCVCGDSHTATHGAFGALAFGIGTSEVEHVLATSTLPQKKAKNMRILVDGELGAGVASKDVVLHICGIIGTAGGTGCTIEFAGSAIRSLSMEARMSICNMAIEAGARAGLIAPDETTFEYLKGRpmvPRPDSpeweaalayWRTLVSDEGAVYDKEVVIDAADIAPTVTWGTSPQDTAPITGV 290
                 699999987755*******************************************************************************************************************************854222343322222334447899******************************99998755 PP

  == domain 2    score: 100.1 bits;  conditional E-value: 6.2e-32
   TIGR01342 282 egikveqvvvgsctnsayvdllraakllegrevskdvvlivapgskqalellaregallellkagvrile.aacgacigigfvp.asdsvslrsfnrnfkgragieddkvylaspevavaaaiageivdprdlaedeglkairvemgekysygdeadidiltkeeridvelikgpnikslpvkeplgedvegevllkvednittdhiipat..adilklrsniealseyvlsr...vd....defverakkldek...gkagvlvagenygqgssrehaalaprflgveavlaksfarihkanlvnfgvlpleid 582
                 + i +++v +gsctn+  +d+   a + +g++v ++v+ +v pgs    e   +eg    l+ ag        c  c+ +       +     + nrnf+gr g    + +l+sp +a+aaa++g++ d r+l      +  +v ++++ + g ++ ++    e  +   +     i ++    p   +++g ++    +n+ td iip      i +      a++e  ++    v     +  +er   + +k    ++ +lv+g+n+g gssreha  +   +g++++++ sfa i   n +  g+lpl++ 
  MMETSP1137-20121227|6524_1 324 DSIAIDKVFIGSCTNGRIEDIRAVASVAKGKKVAPNVQAMVVPGSGMVKEQAEEEGLDKVLIDAGFDWRRmPGCSMCLAMNADKlGMHERCASTSNRNFEGRQGAG-GRTHLVSPIMAAAAAVTGKLSDVRKL------ELWEVPVPQDGAEGPASRLQRTMYEAAVA-SFAASGAIAAVGM--PKFVNLKGTAAPLDLQNVDTDMIIPKEylKTIKRTGLGFAAFAELRYENpveVArkgaEVAIERSDFVLNKqqyRNSVILVTGDNFGCGSSREHAPWSIAGFGIRCIISTSFADIFYNNCFKNGMLPLKLS 628
                 67899*************************************************************9986258******9875514566777899*********86.5789**************99888886......67788999999999999888877666655.5555556777654..66678899988777789********8622344445556678888877642112211113345666544333111457899************************************************987 PP

>> TIGR00139  h_aconitase: homoaconitase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.5   0.0   9.2e-28   2.9e-25      34     302 ..       8     277 ..       4     290 .. 0.82
   2 !   54.7   0.1   4.1e-18   1.3e-15     319     455 ..     325     453 ..     317     483 .. 0.89
   3 !   34.9   0.0   3.9e-12   1.2e-09     562     636 ..     553     628 ..     539     642 .. 0.85

  Alignments for each domain:
  == domain 1    score: 86.5 bits;  conditional E-value: 9.2e-28
   TIGR00139  34 rcmshdnswpvalkfmslgasklknpdqivttldhdvqnkseknlkkykq.iee............fakkhgvefypag...rgighqimieegyafpltlavasdshsntygglgslgtpivrtdaaavwatgktwwqippvakvelkgvlpqgvsgkdvivalcglfnkddvlnhaieftgseeslralsvdtrltianmttewgalsglfpvdkvlkdwlknkatlaklgladgpfktrkaerfthplleekakiplkadkdakyakklildlaslspyvsg 302
                 r + h+ + p a+  +s+    ++ pd  ++t+dh++   s k++k     iee              +  ++ ++  g   +gi h i  e+g++ p++ +v+ dsh+ t+g  g+l   i  ++   v at     +     ++ + g l  gv+ kdv++ +cg++        +ief+g   ++r+ls++ r++i+nm+ e ga +gl+  d++  ++lk++     +   d p  + +                l +d +a y k++++d a ++p v+ 
  MMETSP1137-20121227|6524_1   8 RHLVHEVTSPQAFEGLSVAGRPVRRPDCTLVTVDHNIPTTSRKKFKSVESfIEEeqsrmqvmtlekNVQAFNLPYFGMGdkrQGIVHIIGPEQGFTVPGSTCVCGDSHTATHGAFGALAFGIGTSEVEHVLATSTLPQKKAKNMRILVDGELGAGVASKDVVLHICGIIGTAGGTGCTIEFAG--SAIRSLSMEARMSICNMAIEAGARAGLIAPDETTFEYLKGR---PMVPRPDSPEWEAALAY----------WRTLVSDEGAVYDKEVVIDAADIAPTVTW 277
                 567899999******************************999987765432333111111100000333344556666655469*************************************************9999999999****************************************..89***************************************...44455566655433322..........34567889999999999999988888765 PP

  == domain 2    score: 54.7 bits;  conditional E-value: 4.1e-18
   TIGR00139 319 dikvdkaylvsctnsrlsdlaaaadvvkeaaeknggkvnkva.gvkfyvaaasieeeldaeksgdwekllkagai.qlpagcgpciglgagllepgevgisasnrnfkgrmgskeakaylaspevvaasallgklsspa 455
                  i +dk ++ sctn r+ d++a a v k          +kva  v+  v   s  ++ +ae++g  + l++ag   +   gc  c+ + a  l   e   s+snrnf gr g+   +++l sp + aa+a++gkls   
  MMETSP1137-20121227|6524_1 325 SIAIDKVFIGSCTNGRIEDIRAVASVAKG---------KKVApNVQAMVVPGSGMVKEQAEEEGLDKVLIDAGFDwRRMPGCSMCLAMNADKLGMHERCASTSNRNFEGRQGAG-GRTHLVSPIMAAAAAVTGKLSDVR 453
                 699********************999652.........4666689999*************************8525566********************************85.6899****************9755 PP

  == domain 3    score: 34.9 bits;  conditional E-value: 3.9e-12
   TIGR00139 562 kmarvcmenydaefst.kvkegdilvsgfnfgtgssreqaatallakkinlvvsgsfgnifsrnsinnalltlevp 636
                 k a+v +e  d  ++  + ++  ilv+g nfg+gssre a  ++   +i  ++s sf +if  n  +n +l l++ 
  MMETSP1137-20121227|6524_1 553 KGAEVAIERSDFVLNKqQYRNSVILVTGDNFGCGSSREHAPWSIAGFGIRCIISTSFADIFYNNCFKNGMLPLKLS 628
                 568888888887775515678899**********************************************998875 PP

>> TIGR01340  aconitase_mito: aconitate hydratase, mitochondrial
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.8   0.2   1.2e-29   3.7e-27     117     328 ..      71     288 ..      35     301 .. 0.86
   2 !   26.6   0.1   1.2e-09   3.8e-07     346     472 ..     331     449 ..     316     454 .. 0.86
   3 !   31.7   0.0   3.5e-11   1.1e-08     618     694 ..     569     645 ..     522     668 .. 0.80

  Alignments for each domain:
  == domain 1    score: 92.8 bits;  conditional E-value: 1.2e-29
   TIGR01340 117 lesaakkygidfwkpG...sGiihqivlen.yavpGllmlGtdshtpnaGGlaaiaiGvGGadavdvlagipwelkapkvlGvkltGklsgwtspkdvilklaglltvkGGtGaiveyfGeGveslsctGmaticnmGaeiGattslfpfneaskdylkatn...raeiaeeakvakdkaellkadkdaeydelieidlsklephvnGpftpdlstpis 328
                 le   + +++ +++ G    Gi+h i  e+ ++vpG   +  dsht   G ++a+a G+G ++  +vla      k  k + + + G+l   +++kdv+l+++g++   GGtG  +e+ G  + sls     +icnm  e Ga + l+  +e++ +ylk      r +  e  ++a    ++l +d++a yd+ + id  ++ p v    +p+ + pi+
  MMETSP1137-20121227|6524_1  71 LEKNVQAFNLPYFGMGdkrQGIVHIIGPEQgFTVPGSTCVCGDSHTATHGAFGALAFGIGTSEVEHVLATSTLPQKKAKNMRILVDGELGAGVASKDVVLHICGIIGTAGGTGCTIEFAGSAIRSLSMEARMSICNMAIEAGARAGLIAPDETTFEYLKGRPmvpRPDSPE-WEAALAYWRTLVSDEGAVYDKEVVIDAADIAPTVTWGTSPQDTAPIT 288
                 566677777777777643369***9998755********************************************************************************************************************************854111433333.3356777788889*********************9999999999986 PP

  == domain 2    score: 26.6 bits;  conditional E-value: 1.2e-09
   TIGR01340 346 GliGsctnssyedmsrvasivkdaekaGlkskidftvtpGseqiratlerdgilevfekaGgvv.lanacGpciGqwdrkdvvkkgekntiltsynrnfrgrndanratmaflaspelvtalsvaGsl 472
                  +iGsctn   ed+  vas++k    + + ++++ +v pGs  ++   e +g  +v+ +aG        c  c+      d  k g ++   ++ nrnf gr+ a   t+  l sp + +a +v+G+l
  MMETSP1137-20121227|6524_1 331 VFIGSCTNGRIEDIRAVASVAKG---KKVAPNVQAMVVPGSGMVKEQAEEEGLDKVLIDAGFDWrRMPGCSMCLAMN--AD--KLGMHERCASTSNRNFEGRQGAGGRTH--LVSPIMAAAAAVTGKL 449
                 58*************99999886...5688*****************************997651567899999864..45..557777778889**********99987..78*********99986 PP

  == domain 3    score: 31.7 bits;  conditional E-value: 3.5e-11
   TIGR01340 618 kargvkwvvvaeenyGeGsarehaaleprylGgriiivksfarihetnlkkqGvlpltfaneadydkiqaedkvell 694
                 ++  +  + v+  n+G Gs+reha  +   +G r ii  sfa i   n  k+G+lpl ++ ++  +++   + ++ +
  MMETSP1137-20121227|6524_1 569 QQYRNSVILVTGDNFGCGSSREHAPWSIAGFGIRCIISTSFADIFYNNCFKNGMLPLKLSRPQVLELMADAEALKPI 645
                 3334455678889**********************************************999988888777766655 PP

>> TIGR01341  aconitase_1: aconitate hydratase 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.2   0.0   4.6e-29   1.5e-26     189     549 ..     107     449 ..      92     468 .. 0.83
   2 !   26.9   0.0   6.5e-10     2e-07     741     806 ..     566     631 ..     553     660 .. 0.84

  Alignments for each domain:
  == domain 1    score: 90.2 bits;  conditional E-value: 4.6e-29
   TIGR01341 189 dslvGtdshttminGlGvlGwGvGGieaeaallGqpvslsvpeviGvkltGklreGvtatdlvltvtellrkkgvvgkfveffGeglkelsladratianmapeyGataaffpiddvtlqylr...ltgrdedkvelvekylkaqelfvddseepkytdvveldlsdveasvaGpkrpqdrvalkevkaafksslesnagekglalrkeakekkle.gkeaelkdgavviaaitsctntsnpsvllgagllakkavelGlkvkpyvktslapGskvvtdylaesgllpyleelGfnlvGy.GcttciGnsGpleeeveeaikendlevsavlsGnrnfegrihplvkanylaspplvvayalaGtv 549
                  + v  dsht+    +G l +G+G  e e +l    +  +  + + + + G+l  Gv++ d+vl++  ++   g  g  +ef G ++++ls+  r +i+nma e Ga a++   d++t++yl+   +  r+ d  e   + +  + l  d+   ++y + v +d  d+ ++v+    pqd  +++ v  + +  + ++ + ++ ++++    + l     + l++ a+    i sctn     +       a  +v  G kv p v++ + pGs +v +   e gl + l + Gf+     Gc+ c+    +          + +++  +  + nrnfegr     + ++l+sp++  a a++G++
  MMETSP1137-20121227|6524_1 107 STCVCGDSHTATHGAFGALAFGIGTSEVEHVLATSTLPQKKAKNMRILVDGELGAGVASKDVVLHICGIIGTAGGTGCTIEFAGSAIRSLSMEARMSICNMAIEAGARAGLIAPDETTFEYLKgrpMVPRP-DSPEWEAALAYWRTLVSDE--GAVYDKEVVIDAADIAPTVTWGTSPQDTAPITGVVPSPE--MATDPA-RKAGMERALAYMGLSdRVGQPLDSIAIDKVFIGSCTNGRIEDIR------AVASVAKGKKVAPNVQAMVVPGSGMVKEQAEEEGLDKVLIDAGFDWRRMpGCSMCLAMNAD----------KLGMHERCASTSNRNFEGRQGAGGR-THLVSPIMAAAAAVTGKL 449
                 467999**************************9999999999999999**************************************************************************833223343.4555555555555666654..689*****************************9988443..333333.3446777777666652556778888999999******9876654......444566799***********************************998655*****974433..........334455555678*******887766.689*************97 PP

  == domain 2    score: 26.9 bits;  conditional E-value: 6.5e-10
   TIGR01341 741 mkykkegvplvvlaGkeyGsGssrdwaakgtkllGvkaviaesferihrsnlvgmGvlplefkqge 806
                 ++ ++ + ++++++G ++G Gssr+ a  +   +G++++i+ sf  i   n    G+lpl++   +
  MMETSP1137-20121227|6524_1 566 LNKQQYRNSVILVTGDNFGCGSSREHAPWSIAGFGIRCIISTSFADIFYNNCFKNGMLPLKLSRPQ 631
                 555667788999************************************************987654 PP

>> TIGR02333  2met_isocit_dHY: 2-methylisocitrate dehydratase, Fe/S-dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.6   0.4   3.7e-22   1.2e-19     182     535 ..      95     449 ..      87     461 .. 0.76
   2 !   15.5   0.0   2.1e-06   0.00066     728     785 ..     570     627 ..     548     638 .. 0.89

  Alignments for each domain:
  == domain 1    score: 67.6 bits;  conditional E-value: 3.7e-22
   TIGR02333 182 vvqvkegvafp.dtlvgtdshtphvdalgviaigvggleaetvmlgraslmrlpdivgveltgkrqpgitatdivlalteflrkekvvsayleffgegakaltlgdratisnmtpeygataamfaideqtidylkltgreeeqvklvetyakaaglwad..slkkavyervlkfdlssvvrnlagpsnphar......latsdlaakgiakevee.........eaeglmpdgavi.iaaitsctntsnprnvvaagllarnanklglkrkpwvksslapgskvvklyleeagllkeleklgfgivaf.acttcngmsgaldpviqqeiidrdlyatavlsgnrnfdgrihpyakqaflaspplvvayaiagti 535
                 ++  ++g + p  t+v  dsht    a+g +a g+g  e e v+   +   +  + + + + g+  +g+++ d+vl +  ++      ++ +ef g   ++l++  r +i nm+ e ga a+++a de t++ylk  gr          +  a   w    s + avy++ + +d + +  +++  + p+        +++ ++a+    k   e         +  g+  d   i    i sctn     ++ a + +     ++g k  p v++ + pgs +vk   ee gl k l + gf    +  c+ c  m           + +      +  + nrnf+gr      ++ l sp +  a a++g +
  MMETSP1137-20121227|6524_1  95 IIGPEQGFTVPgSTCVCGDSHTATHGAFGALAFGIGTSEVEHVLATSTLPQKKAKNMRILVDGELGAGVASKDVVLHICGIIGTAGGTGCTIEFAGSAIRSLSMEARMSICNMAIEAGARAGLIAPDETTFEYLK--GRPMVPRPDSPEWEAALAYWRTlvSDEGAVYDKEVVIDAADIAPTVTWGTSPQDTapitgvVPSPEMATDPARKAGMEralaymglsDRVGQPLDSIAIdKVFIGSCTNGRI-EDIRAVASV-----AKGKKVAPNVQAMVVPGSGMVKEQAEEEGLDKVLIDAGFDWRRMpGCSMCLAMNAD--KL---GMHE-----RCASTSNRNFEGRQGA-GGRTHLVSPIMAAAAAVTGKL 449
                 55667888888458******************************999999999999*****************************************************************************98..5544433334444444455544113368*************99999876666654111111344455543322222223333444433345555554441356899*99753.445454444.....468999*********************************98766368888888642..22...2223.....3344679999999765.556789999999999999876 PP

  == domain 2    score: 15.5 bits;  conditional E-value: 2.1e-06
   TIGR02333 728 nrkqpliiiagadygqgssrdwaakgvrlagveaivaegferihrtnlvgmgvlplef 785
                 + ++ +i+++g ++g gssr+ a   +   g+ +i++  f  i   n    g+lpl++
  MMETSP1137-20121227|6524_1 570 QYRNSVILVTGDNFGCGSSREHAPWSIAGFGIRCIISTSFADIFYNNCFKNGMLPLKL 627
                 445689**************************************************87 PP

>> TIGR02087  LEUD_arch: 3-isopropylmalate dehydratase, small subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   7.5e-06    0.0024       9      48 ..     514     554 ..     512     565 .. 0.84
   2 !   64.6   0.0   5.6e-21   1.8e-18      43     134 ..     569     664 ..     555     686 .. 0.82

  Alignments for each domain:
  == domain 1    score: 15.5 bits;  conditional E-value: 7.5e-06
   TIGR02087   9 dvdtdaiiPgrylrttdlkelakhamegidpefakkv.reG 48 
                 +vdtd+iiP +yl+t++ + l+  a+++++ e + +v r+G
  MMETSP1137-20121227|6524_1 514 NVDTDMIIPKEYLKTIKRTGLGFAAFAELRYENPVEVaRKG 554
                 8****************************988765541555 PP

  == domain 2    score: 64.6 bits;  conditional E-value: 5.6e-21
   TIGR02087  43 kkvreGdvivaGknfGiGssreqaalalkaaGvaaviaesfarifyrnainvGlplivae..dvtelikdGde...vevdlekgeirkvakkevlkl 134
                 ++ r+ +++v+G nfG+Gssre+a+ ++   G++++i+ sfa ify n   +G+  + ++  +v el+ d +    +evdl ++++++  + +++ +
  MMETSP1137-20121227|6524_1 569 QQYRNSVILVTGDNFGCGSSREHAPWSIAGFGIRCIISTSFADIFYNNCFKNGMLPLKLSrpQVLELMADAEAlkpIEVDLPSQKVIR-HDGSTFDF 664
                 5679999**********************************************98887764589999999886334789999999985.55555554 PP

>> TIGR02084  leud: 3-isopropylmalate dehydratase, small subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.7   0.0     6e-22   1.9e-19       8     138 ..     513     670 ..     511     685 .. 0.69

  Alignments for each domain:
  == domain 1    score: 67.7 bits;  conditional E-value: 6e-22
   TIGR02084   8 dnvdtdviiparylnt................sdpkelakhcmedl.dk.ef...kkkvkegdilvagknfgcgssrehapiaikasgiscviaksfarifyrnainiglpive.se....eavdeleegdevevdl.ekgiiknvkkgkeykakpfp 138
                 +nvdtd+iip  yl t                 +p e+a++  e + ++ +f   k++ ++  ilv+g nfgcgssrehap +i   gi c+i+ sfa ify n+   g+  ++ s+    e + ++e    +evdl ++ +i+    + ++++  f 
  MMETSP1137-20121227|6524_1 513 QNVDTDMIIPKEYLKTikrtglgfaafaelryENPVEVARKGAEVAiERsDFvlnKQQYRNSVILVTGDNFGCGSSREHAPWSIAGFGIRCIISTSFADIFYNNCFKNGMLPLKlSRpqvlELMADAEALKPIEVDLpSQKVIRHDGSTFDFEVDSFR 670
                 59999999999999983333332222221111235566666555432334775434556778899****************************************99886444313222225666777778889998445688877777777777665 PP

>> TIGR00117  acnB: aconitate hydratase 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.2   0.1    0.0025      0.79     476     543 ..     102     172 ..      87     184 .. 0.84
   2 !   63.6   0.1   5.7e-21   1.8e-18     650     811 ..     254     451 ..     239     460 .. 0.77
   3 ?   -1.0   0.0      0.19        59     228     286 ..     580     626 ..     537     664 .. 0.67

  Alignments for each domain:
  == domain 1    score: 5.2 bits;  conditional E-value: 0.0025
   TIGR00117 476 mllpdtvgtggdshtrf..plg.isfpagsglvafaaatgvmpldmpesvlvrfkgelqpgitlrdlvnai 543
                 + +p +    gdsht     +g ++f  g+  v    at ++p +  + + +   gel  g++ +d+v  i
  MMETSP1137-20121227|6524_1 102 FTVPGSTCVCGDSHTAThgAFGaLAFGIGTSEVEHVLATSTLPQKKAKNMRILVDGELGAGVASKDVVLHI 172
                 5678888999****97522455479******************************************9766 PP

  == domain 2    score: 63.6 bits;  conditional E-value: 5.7e-21
   TIGR00117 650 adadaeyaavieidlaeikepilaapndpddvkllsevagd.................................aidevfigscmt.nighfraagkileaak.tvkarlwvvpptrmdeqqlieegyyaifgaagar.tevpgcslcmgnqa.rvedgatvfststrnfdnrlgkgakvylgsaelaavaallgkipt 811
                 +d  a y + + id a+i  p ++    p+d+++++ v                                    aid+vfigsc    i   ra++ + +++k + + +  vvp + m ++q  eeg+  ++  ag     +pgcs+c+  +a ++       sts rnf+ r g g + +l s  +aa+aa+ gk+  
  MMETSP1137-20121227|6524_1 254 SDEGAVYDKEVVIDAADIA-PTVTWGTSPQDTAPITGVVPSpematdparkagmeralaymglsdrvgqpldsiAIDKVFIGSCTNgRIEDIRAVASVAKGKKvAPNVQAMVVPGSGMVKEQAEEEGLDKVLIDAGFDwRRMPGCSMCLAMNAdKLGMHERCASTSNRNFEGRQGAGGRTHLVSPIMAAAAAVTGKLSD 451
                 5556666666666666664.5555555555555555555444455556666666666666666666666777779*********7536*************9955667899************************975268*******98555277888899**********************************975 PP

  == domain 3    score: -1.0 bits;  conditional E-value: 0.19
   TIGR00117 228 gdvvgtgssrksatnsvlwflgkdipfvpnkragglvlggkiapiffntaedsgalpie 286
                 gd  g gssr  a  s+  f            +   ++    a if+n +   g lp++
  MMETSP1137-20121227|6524_1 580 GDNFGCGSSREHAPWSIAGF------------GIRCIISTSFADIFYNNCFKNGMLPLK 626
                 55555555555444443322............112355556666666666666666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (749 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       117  (0.0285227); expected 82.0 (0.02)
Passed bias filter:                      100  (0.0243784); expected 82.0 (0.02)
Passed Vit filter:                        23  (0.00560702); expected 4.1 (0.001)
Passed Fwd filter:                        13  (0.00316919); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.78u 0.19s 00:00:00.97 Elapsed: 00:00:00.72
# Mc/sec: 1373.05
//
Query:       MMETSP1137-20121227|6525_1  [L=123]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (123 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        46  (0.011214); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.18s 00:00:00.32 Elapsed: 00:00:00.27
# Mc/sec: 601.28
//
Query:       MMETSP1137-20121227|6526_1  [L=127]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.014   13.7   0.3      0.019   13.2   0.2    1.3  1  TIGR01673 holin_LLH: phage holin, LL-H family


Domain annotation for each model (and alignments):
>> TIGR01673  holin_LLH: phage holin, LL-H family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.2   4.7e-06     0.019      17      65 ..      75     123 ..      56     125 .. 0.86

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 4.7e-06
   TIGR01673  17 avvvsvYvkhklkidkktkkgdklakaldklakaavsaveqaekesgkG 65 
                 +++v v  + k+k+d ++ kg+k  k  +k   +a++av +  ++ g+G
  MMETSP1137-20121227|6526_1  75 SSFVAVLYNDKVKADRDKDKGKKKSKGKAKASMSAGKAVDNDYDDYGGG 123
                 55555555899****************************9988877766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (127 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       159  (0.0387616); expected 82.0 (0.02)
Passed bias filter:                      123  (0.0299854); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.18u 0.10s 00:00:00.28 Elapsed: 00:00:00.38
# Mc/sec: 441.12
//
Query:       MMETSP1137-20121227|6527_1  [L=222]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (222 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       205  (0.0499756); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.14s 00:00:00.32 Elapsed: 00:00:00.38
# Mc/sec: 771.09
//
Query:       MMETSP1137-20121227|6528_1  [L=184]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (184 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        98  (0.0238908); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.16s 00:00:00.34 Elapsed: 00:00:00.49
# Mc/sec: 495.63
//
Query:       MMETSP1137-20121227|6529_1  [L=428]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   7.9e-164  543.4   3.1   1.2e-163  542.8   2.1    1.3  1  TIGR01425 SRP54_euk: signal recognition particle protein SRP54
    7.8e-94  312.7   1.5    7.8e-94  312.7   1.1    1.9  2  TIGR00959 ffh: signal recognition particle protein
    4.4e-58  194.6   0.1    4.4e-58  194.6   0.0    1.4  2  TIGR00064 ftsY: signal recognition particle-docking protein FtsY
    7.5e-17   60.1   4.6    9.3e-17   59.7   0.0    2.5  3  TIGR03499 FlhF: flagellar biosynthesis protein FlhF
     0.0023   15.6   0.5      0.035   11.7   0.3    2.3  1  TIGR00231 small_GTP: small GTP-binding protein domain
     0.0026   14.6   0.1     0.0026   14.6   0.1    1.7  2  TIGR03594 GTPase_EngA: ribosome-associated GTPase EngA
     0.0088   14.1   0.6       0.19    9.9   0.1    2.5  2  TIGR02528 EutP: ethanolamine utilization protein, EutP
  ------ inclusion threshold ------
      0.019   12.7   0.2      0.051   11.3   0.0    1.8  2  TIGR02237 recomb_radB: DNA repair and recombination protein RadB
      0.045   10.9   1.7       0.13    9.3   0.0    2.0  2  TIGR02855 spore_yabG: sporulation peptidase YabG


Domain annotation for each model (and alignments):
>> TIGR01425  SRP54_euk: signal recognition particle protein SRP54
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  542.8   2.1  2.6e-166  1.2e-163      60     427 ..       2     363 ..       1     365 [. 0.97

  Alignments for each domain:
  == domain 1    score: 542.8 bits;  conditional E-value: 2.6e-166
   TIGR01425  60 nleelasglnkrkliqkavfeelvnlvdpkveafkpkkgkssvimfvGlqGaGktttitklalyykkkGfkvalvcadtfraGafdqlkqnatkakipfyGsylesdpvkiaseGvekfkkekfdiiivdtsGrhkqeeelfeemlqvaeaikpdsiifvmdgsiGqaaesqakafkdsvevgsviitkldGhakGGGalsavaatkspiifiGtGekvddleifdaksfvskllGlGdlkGlidkvk..dlklddeekelieklkeGkftlrdlkeqlqnllkmGplgnilsmipGlssellskgneeessaklkkllvildsmtdkeldstdkvllkeesrivrvarGsGraireveelleqykklak 427
                 + e+lasg+nkrk++ +av +el++++ p+++++ pkk+++++imfvGlqG+Gkttt+tk+a+ yk +Gfk alvcadtfraGafdqlkqnatkakipfyGsy+e+dp +ia+eGv kf++e ++iiivdtsGrh qe++lfeem+qva a++pd+++fvmd+siGqaa++qa afk +v+vgsvi+tkldGhakGGGalsavaat +pi  iGtGe+++d+e f++ksfvs++lG G++ Gl++k+k  d+ l+++ +e++++l  G++tlrd++eq+q +lkmGpl+ni++  pG+s     + + ++s  ++k +l+++dsmt++eld t+ +    +srivr+arGsG +  ev elleq+k++++
  MMETSP1137-20121227|6529_1   2 DPESLASGMNKRKMLXQAVCNELCSMLSPGKDPYVPKKKQANIIMFVGLQGCGKTTTCTKYAYMYKMRGFKCALVCADTFRAGAFDQLKQNATKAKIPFYGSYTETDPAQIAAEGVAKFREEAYEIIIVDTSGRHMQEAALFEEMEQVASAVQPDEVVFVMDSSIGQAAHDQASAFKSKVSVGSVIVTKLDGHAKGGGALSAVAATGAPITHIGTGEHIEDFEDFEVKSFVSRMLGKGNIAGLMEKMKaaDVDLEKQAPEMMKRLTSGQWTLRDMREQFQAVLKMGPLSNIMNQFPGMS-----GLDFHDSGVRIKMWLTMMDSMTEAELDETKTI---APSRIVRIARGSGHHPMEVMELLEQFKMMQT 363
                 66899************************************************************************************************************************************************************************************************************************************************98644788899999**************************************98.....667778889******************98765...489**************************96 PP

>> TIGR00959  ffh: signal recognition particle protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  312.7   1.1   1.7e-96   7.8e-94      63     428 .]       6     367 ..       2     367 .. 0.96
   2 ?   -3.7   5.2       1.9   8.4e+02     313     374 ..     366     427 ..     364     428 .] 0.78

  Alignments for each domain:
  == domain 1    score: 312.7 bits;  conditional E-value: 1.7e-96
   TIGR00959  63 vlkslspkqqlikivkeeLvallgeesaelklaekkpavillvGLqGsGKtttaaKlakklkkkekkkvllvalDlyRpaAveqLkvlgeqvgvpvfekekekspveiakealeeakeekvdvvivDtaGRlqideelmeelkeikevlnPdeillVvdaltGqdavnvakeFderlgltgvvltklDgDargGaaLsvksvtgkPikfigvgEkledleeFhperiaeRilgmGDvlsLvekaeev.vd.eeeakklaeklakeefdleDlleqlrqikklGslskllkmlPglgkvkksekdldedekklkrieaiissmtkeErknpkilnasRkkRiakGsGtsvsdvnklikefeqakklmkk 428
                 + ++++ +++l + v +eL ++l+  + +   ++k+  +i++vGLqG GKttt++K a++  k ++ k  lv +D+ R++A +qLk+ +++ ++p++ + +e++p++ia+e++++++ee+++++ivDt GR   + +l ee++++ ++++Pde+++V+d+ +Gq a   a +F+ ++++ +v++tklDg a+gG aLs  + tg Pi  ig+gE++ed+e F  ++ ++R+lg G +  L+ek++ + vd e++a +++++l++++ +l D++eq++++ k+G+ls++++  Pg+++      d +++  ++k +  +++smt+ E ++ k + +sR  Ria+GsG++  +v +l+++f+ ++++m+k
  MMETSP1137-20121227|6529_1   6 LASGMNKRKMLXQAVCNELCSMLSPGKDPYVPKKKQANIIMFVGLQGCGKTTTCTKYAYM-YKMRGFKCALVCADTFRAGAFDQLKQNATKAKIPFYGSYTETDPAQIAAEGVAKFREEAYEIIIVDTSGRHMQEAALFEEMEQVASAVQPDEVVFVMDSSIGQAAHDQASAFKSKVSVGSVIVTKLDGHAKGGGALSAVAATGAPITHIGTGEHIEDFEDFEVKSFVSRMLGKGNIAGLMEKMKAAdVDlEKQAPEMMKRLTSGQWTLRDMREQFQAVLKMGPLSNIMNQFPGMSG-----LDFHDSGVRIKMWLTMMDSMTEAELDETKTIAPSRIVRIARGSGHHPMEVMELLEQFKMMQTTMQK 367
                 567899999*****************9999999**************************8.888999*******************************************************************************************************************************************************************************987532663567889*************************************974.....5566667799*****************************************************986 PP

  == domain 2    score: -3.7 bits;  conditional E-value: 1.9
   TIGR00959 313 eeakklaeklakeefdleDll..eqlrqikklGslskllkmlPglgkvkksekdldedekklkr 374
                 +++ k ++k+ k+ +d++ +   +  ++++k+ +  ++l  l g +++++ + +++++ekk+k+
  MMETSP1137-20121227|6529_1 366 QKTMKKKKKMGKAGMDMNNMSaaDVAQMMHKMNP--QMLAHLGGQAGLEQMMAEMEKEEKKFKK 427
                 4566778888888899999862144667777775..78999999999999999****9999997 PP

>> TIGR00064  ftsY: signal recognition particle-docking protein FtsY
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  194.6   0.0   9.6e-61   4.4e-58      48     278 ..      14     235 ..       3     236 .. 0.92
   2 ?   -3.7   0.1       2.7   1.2e+03      38      43 ..     367     372 ..     351     399 .. 0.48

  Alignments for each domain:
  == domain 1    score: 194.6 bits;  conditional E-value: 9.6e-61
   TIGR00064  48 ellkeelkealkeileketklelkelkeekkpnvillvGvNGvGKTttiaKlakllkkegkkvllaAgDTFrAaAieQleewakrlgvkvikqkegadpaavifdaikkakaknidvvliDTaGRlqnkknLmdelkkikrvikkvkkeapdevllvldattGqnaleqakvFneaveldgiilTKlDgtakgGivlaikeelklpvkligvGekidDLaeFdaeefveal 278
                 ++l +++ ++l ++l+  ++      +++k+ n+i++vG+ G GKTtt +K a ++k +g k+ l+ +DTFrA+A +Ql++ a +++++   + +++dpa ++ +++ k +++ ++++++DT+GR  ++  L +e+++++  ++      pdev++v+d+ +Gq a  qa +F+  v++ ++i+TKlDg akgG +l+   +++ p++ ig+Ge+i+D++ F+ ++fv+++
  MMETSP1137-20121227|6529_1  14 KMLXQAVCNELCSMLSPGKD---PYVPKKKQANIIMFVGLQGCGKTTTCTKYAYMYKMRGFKCALVCADTFRAGAFDQLKQNATKAKIPFYGSYTETDPAQIAAEGVAKFREEAYEIIIVDTSGRHMQEAALFEEMEQVASAVQ------PDEVVFVMDSSIGQAAHDQASAFKSKVSVGSVIVTKLDGHAKGGGALSAVAATGAPITHIGTGEHIEDFEDFEVKSFVSRM 235
                 55555555555555444444...345899****************************************************************************************************************999......******************************************************************************987 PP

  == domain 2    score: -3.7 bits;  conditional E-value: 2.7
   TIGR00064  38 kkvkee 43 
                 k++k++
  MMETSP1137-20121227|6529_1 367 KTMKKK 372
                 111111 PP

>> TIGR03499  FlhF: flagellar biosynthesis protein FlhF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.7   0.0     2e-19   9.3e-17     175     286 .]      18     134 ..       4     134 .. 0.77
   2 ?   -2.2   0.0       1.6   7.1e+02     139     182 ..     240     285 ..     229     298 .. 0.69
   3 ?    0.4   1.0      0.24   1.1e+02      67     115 ..     359     416 ..     309     427 .. 0.50

  Alignments for each domain:
  == domain 1    score: 59.7 bits;  conditional E-value: 2e-19
   TIGR03499 175 eklreaLekklsv.kkeedeilekggviaLvGptGvGKTTTlAKLAarfvlehgkkkValiTtDtyRiGAveQLktYakilgvpvkvvkdpkeleeale......elkdkdliLiDTaG 286
                 +++ + L ++ls  k+   + +++  +i++vG  G GKTTT  K A  ++++ g  k al+ +Dt+R GA++QLk+ a   ++p++  +++++ +++ +      + + +++i++DT G
  MMETSP1137-20121227|6529_1  18 QAVCNELCSMLSPgKDPYVPKKKQANIIMFVGLQGCGKTTTCTKYAYMYKMR-GF-KCALVCADTFRAGAFDQLKQNATKAKIPFYGSYTETDPAQIAAegvakfREEAYEIIIVDTSG 134
                 55555666666321233345677888************************99.66.9*****************************99998887775541222124567899*****88 PP

  == domain 2    score: -2.2 bits;  conditional E-value: 1.6
   TIGR03499 139 erakllkklleagvs.eelarelleklke.kedaeeareklreaLe 182
                 ++a l++k+++a+v+ e+ a e++++l   + + +++re+++++L+
  MMETSP1137-20121227|6529_1 240 NIAGLMEKMKAADVDlEKQAPEMMKRLTSgQWTLRDMREQFQAVLK 285
                 5666777777777753455666777766666666666666666664 PP

  == domain 3    score: 0.4 bits;  conditional E-value: 0.24
   TIGR03499  67 kkaleeaepkklskaeekeekekeaeekaaeaaqeaekkleeae.........eelrk 115
                 k ++++++++ ++k++  ++  ++++++aa+ aq  +k++++           e++++
  MMETSP1137-20121227|6529_1 359 KMMQTTMQKTMKKKKKMGKAGMDMNNMSAADVAQMMHKMNPQMLahlggqaglEQMMA 416
                 3333333333333333333333333333333333333333333344444444433333 PP

>> TIGR00231  small_GTP: small GTP-binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.7   0.3   7.6e-05     0.035       6      78 ..      45     150 ..      40     193 .. 0.71

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 7.6e-05
   TIGR00231   6 ivivGhvdvGKstLlnsllknkisiteskp....gvtrdyvteqieedGkt.............................ykvnllDTaG.qedfdairrlyvreve 78 
                 i +vG  ++GK+t+  ++++ + +     +     ++r  + +q +++  +                             y++ ++DT G +++ +a+ +  +++v+
  MMETSP1137-20121227|6529_1  45 IMFVGLQGCGKTTTCTKYAYMYKMRGFKCAlvcaDTFRAGAFDQLKQNATKakipfygsytetdpaqiaaegvakfreeaYEIIIVDTSGrHMQEAALFEE-MEQVA 150
                 78999999999999999988775444444455577888888888888887799999999999999999999999999999**********86665444333.23332 PP

>> TIGR03594  GTPase_EngA: ribosome-associated GTPase EngA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.1   5.8e-06    0.0026      45     123 ..     122     196 ..     115     233 .. 0.75
   2 ?   -1.9   0.1       0.6   2.7e+02     315     356 ..     331     372 ..     316     396 .. 0.70

  Alignments for each domain:
  == domain 1    score: 14.6 bits;  conditional E-value: 5.8e-06
   TIGR03594  45 lkgkefiliDTgGleeeedelekeireqaelaieeadvilfvvdareglteeDeeiaklLrkskkpvilvvNKvdnkke 123
                  +  e+i++DT+G + +e+ l +e++ q+  a++  d ++fv+d   g  ++D++ a   + + +   ++v K+d++++
  MMETSP1137-20121227|6529_1 122 EEAYEIIIVDTSGRHMQEAALFEEME-QVASAVQ-PDEVVFVMDSSIGQAAHDQASA--FKSKVSVGSVIVTKLDGHAK 196
                 566899****************9996.6666765.68999*******9999998654..44444445566778887755 PP

  == domain 2    score: -1.9 bits;  conditional E-value: 0.6
   TIGR03594 315 klkflkfapivfiSAltgkgveklleaikevyeslskrists 356
                 +++  + ++i   S+++ ++v +lle+ k ++++++k ++ +
  MMETSP1137-20121227|6529_1 331 TIAPSRIVRIARGSGHHPMEVMELLEQFKMMQTTMQKTMKKK 372
                 444445666666677888888888888887777777776654 PP

>> TIGR02528  EutP: ethanolamine utilization protein, EutP
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.9   0.1   0.00041      0.19       3      20 ..      45      62 ..      43      69 .. 0.88
   2 ?    1.7   0.0      0.14        63      38      75 ..     128     167 ..     119     197 .. 0.59

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 0.00041
   TIGR02528  3 imliGsvgcGkttLtqaL 20
                im++G  gcGktt + + 
  MMETSP1137-20121227|6529_1 45 IMFVGLQGCGKTTTCTKY 62
                8************99875 PP

  == domain 2    score: 1.7 bits;  conditional E-value: 0.14
   TIGR02528  38 kaiDtPGeylenrryYsaL..lvtaadadvivlvqsatde 75 
                  ++Dt G ++++  +++ +  + +a + d +v+v + +  
  MMETSP1137-20121227|6529_1 128 IIVDTSGRHMQEAALFEEMeqVASAVQPDEVVFVMDSSIG 167
                 679************9987334555566666666554322 PP

>> TIGR02237  recomb_radB: DNA repair and recombination protein RadB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   0.00011     0.051      14     109 ..      44     136 ..      39     155 .. 0.86
   2 ?   -2.4   0.0       1.7   7.6e+02      76      92 ..     351     367 ..     329     408 .. 0.65

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 0.00011
   TIGR02237  14 itqiyGpggsGKtnialilaveaaekgkkvvyiDtEGlsleRlkqiaedrfekvlsklivfevfdldeqekaiqkaskliekekadlvvvDsltal 109
                 i+ + G  g GKt+ + + a     +g k + + ++ +    + q+ ++      +k+  +  +  ++ +++  +     ++e +++++vD+   +
  MMETSP1137-20121227|6529_1  44 IIMFVGLQGCGKTTTCTKYAYMYKMRGFKCALVCADTFRAGAFDQLKQNA---TKAKIPFYGSYTETDPAQIAAEGVAKFREEAYEIIIVDTSGRH 136
                 6678899***************************************9996...7889999999999999999888777777778*******87655 PP

  == domain 2    score: -2.4 bits;  conditional E-value: 1.7
   TIGR02237  76 vfdldeqekaiqkaskl 92 
                 v++l eq k++q +++ 
  MMETSP1137-20121227|6529_1 351 VMELLEQFKMMQTTMQK 367
                 44444444444443322 PP

>> TIGR02855  spore_yabG: sporulation peptidase YabG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   0.0   0.00029      0.13     122     165 ..     123     166 ..     118     187 .. 0.85
   2 ?    0.2   0.3      0.18        80      68     112 ..     362     407 ..     338     423 .. 0.59

  Alignments for each domain:
  == domain 1    score: 9.3 bits;  conditional E-value: 0.00029
   TIGR02855 122 kvykklgvevvGvvvkekempekvadlveevrPdilvitGhdal 165
                 ++y+ + v+  G +++e    e+++++   v+Pd +v     ++
  MMETSP1137-20121227|6529_1 123 EAYEIIIVDTSGRHMQEAALFEEMEQVASAVQPDEVVFVMDSSI 166
                 6899******************************9998655555 PP

  == domain 2    score: 0.2 bits;  conditional E-value: 0.18
   TIGR02855  68 ieeslkllrqdrklkkekkeyratekykeeeevfelpgkvl.hldG 112
                 + ++ k++++++k+ k   ++++ + ++ +++++++  ++l hl G
  MMETSP1137-20121227|6529_1 362 QTTMQKTMKKKKKMGKAGMDMNNMSAADVAQMMHKMNPQMLaHLGG 407
                 3333334444444445556666666666666677766665534444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (428 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       455  (0.110922); expected 82.0 (0.02)
Passed bias filter:                      168  (0.0409556); expected 82.0 (0.02)
Passed Vit filter:                        34  (0.00828864); expected 4.1 (0.001)
Passed Fwd filter:                         9  (0.00219405); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.47u 0.15s 00:00:00.62 Elapsed: 00:00:00.64
# Mc/sec: 882.68
//
Query:       MMETSP1137-20121227|6530_1  [L=98]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (98 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        37  (0.00901999); expected 82.0 (0.02)
Passed bias filter:                       31  (0.00755729); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.31
# Mc/sec: 417.26
//
Query:       MMETSP1137-20121227|6531_1  [L=98]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (98 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        91  (0.0221843); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.17s 00:00:00.34 Elapsed: 00:00:00.36
# Mc/sec: 359.30
//
Query:       MMETSP1137-20121227|6532_1  [L=157]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.027   10.7   0.1      0.031   10.6   0.1    1.1  1  TIGR02517 type_II_gspD: general secretion pathway protein D


Domain annotation for each model (and alignments):
>> TIGR02517  type_II_gspD: general secretion pathway protein D
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.1   7.5e-06     0.031     226     294 ..      60     127 ..      41     148 .. 0.85

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 7.5e-06
   TIGR02517 226 lDvsaseegnvrvyylknadAeelaktLqgvlkgegnesgsskslalagavsaggsssaqaassasvgk 294
                  D +a+ e +vrv+ +   +A+ +  tL +v++  g ++g+++ +++a+a+++   +  ++as++++g+
  MMETSP1137-20121227|6532_1  60 FDTNAKDECEVRVVDVATKNASAISCTLGSVAQAVGYAVGTQRRSPTASARQQA-HQPWKNASRQKGGN 127
                 6999999*********************************99999999999864.56666666655555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (157 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       109  (0.0265724); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.17u 0.16s 00:00:00.33 Elapsed: 00:00:00.32
# Mc/sec: 647.57
//
Query:       MMETSP1137-20121227|6537_1  [L=225]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (225 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        58  (0.0141394); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.10s 00:00:00.29 Elapsed: 00:00:00.54
# Mc/sec: 549.95
//
Query:       MMETSP1137-20121227|6538_1  [L=235]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (235 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        51  (0.012433); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.13s 00:00:00.32 Elapsed: 00:00:00.32
# Mc/sec: 969.29
//
Query:       MMETSP1137-20121227|6539_1  [L=135]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.5e-05   20.9   0.0    4.2e-05   20.7   0.0    1.3  1  TIGR00760 araD: L-ribulose-5-phosphate 4-epimerase
    0.00093   16.6   0.0     0.0012   16.2   0.0    1.1  1  TIGR03328 salvage_mtnB: methylthioribulose-1-phosphate dehydratase


Domain annotation for each model (and alignments):
>> TIGR00760  araD: L-ribulose-5-phosphate 4-epimerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.7   0.0     2e-08   4.2e-05      34      72 ..      85     123 ..      35     127 .. 0.82

  Alignments for each domain:
  == domain 1    score: 20.7 bits;  conditional E-value: 2e-08
   TIGR00760  34 rekelvvikpsgveydeltaddlvvvdlegevvegdkkp 72 
                  +   ++i p gv+++e+t + l+ vd++g vv+g k+p
  MMETSP1137-20121227|6539_1  85 GNPRHFLINPYGVAFEEVTVESLMTVDINGTVVDGGKHP 123
                 4556799*****************************999 PP

>> TIGR03328  salvage_mtnB: methylthioribulose-1-phosphate dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0     6e-07    0.0012       5      62 ..      63     121 ..      59     127 .. 0.89

  Alignments for each domain:
  == domain 1    score: 16.2 bits;  conditional E-value: 6e-07
   TIGR03328   5 grelykrgWvpgtggnlslrl..desellitaSGkdKerleeedllvvdlegkpvespkk 62 
                  r +++ gW++     +++r+  +++++li + G+  e+++ e l++vd++g++v++ +k
  MMETSP1137-20121227|6539_1  63 YRLVAHFGWTETVYQHITARVpgNPRHFLINPYGVAFEEVTVESLMTVDINGTVVDG-GK 121
                 5667788**************999*******************************98.44 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (135 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        52  (0.0126767); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.16u 0.16s 00:00:00.32 Elapsed: 00:00:00.50
# Mc/sec: 356.37
//
Query:       MMETSP1137-20121227|6540_1  [L=49]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (49 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        64  (0.0156021); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.25
# Mc/sec: 258.70
//
Query:       MMETSP1137-20121227|6541_1  [L=389]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (389 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        73  (0.0177962); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.15s 00:00:00.42 Elapsed: 00:00:00.49
# Mc/sec: 1047.83
//
Query:       MMETSP1137-20121227|6542_1  [L=99]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (99 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        45  (0.0109703); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.15s 00:00:00.30 Elapsed: 00:00:00.28
# Mc/sec: 466.68
//
Query:       MMETSP1137-20121227|6543_1  [L=100]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (100 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       104  (0.0253535); expected 82.0 (0.02)
Passed bias filter:                      101  (0.0246221); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.18s 00:00:00.34 Elapsed: 00:00:00.30
# Mc/sec: 439.96
//
Query:       MMETSP1137-20121227|6544_1  [L=1156]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1156 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       134  (0.032667); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.67u 0.17s 00:00:00.84 Elapsed: 00:00:00.74
# Mc/sec: 2061.88
//
Query:       MMETSP1137-20121227|6546_1  [L=67]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.2e-10   36.9   1.2    9.7e-10   36.7   0.8    1.1  1  TIGR02052 MerP: mercuric transport protein periplasmic component
    1.3e-09   36.0   0.7    1.8e-09   35.5   0.5    1.3  1  TIGR00003 TIGR00003: copper ion binding protein


Domain annotation for each model (and alignments):
>> TIGR02052  MerP: mercuric transport protein periplasmic component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.7   0.8   4.7e-13   9.7e-10      18      65 ..      14      62 ..       2      65 .. 0.86

  Alignments for each domain:
  == domain 1    score: 36.7 bits;  conditional E-value: 4.7e-13
   TIGR02052 18 alaatktvt.levPgmtcaacPitvktalkkvdGvekaevsfkqklavv 65
                +l a+ tvt l v gm c+ c   v++al  vdGv+ + v+ ++kla v
  MMETSP1137-20121227|6546_1 14 VLPAAPTVTvLRVEGMMCGNCTAKVEKALSAVDGVDTVSVDLDSKLAKV 62
                555666666489**********************************987 PP

>> TIGR00003  TIGR00003: copper ion binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.5   0.5     9e-13   1.8e-09       4      43 ..      24      63 ..      21      67 .] 0.94

  Alignments for each domain:
  == domain 1    score: 35.5 bits;  conditional E-value: 9e-13
   TIGR00003  4 lqVkgmsCnHCVdkiEkfVGeleGVsavkvdlekekvvVe 43
                l V+gm C  C +k+Ek+   ++GV +v vdl+ + ++V+
  MMETSP1137-20121227|6546_1 24 LRVEGMMCGNCTAKVEKALSAVDGVDTVSVDLDSKLAKVS 63
                78*********************************99997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (67 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       110  (0.0268162); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.30
# Mc/sec: 294.78
//
Query:       MMETSP1137-20121227|6547_1  [L=241]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (241 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        66  (0.0160897); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.18s 00:00:00.39 Elapsed: 00:00:00.39
# Mc/sec: 815.62
//
Query:       MMETSP1137-20121227|6548_1  [L=79]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (79 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        42  (0.0102389); expected 82.0 (0.02)
Passed bias filter:                       41  (0.00999512); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.12s 00:00:00.26 Elapsed: 00:00:00.26
# Mc/sec: 401.04
//
Query:       MMETSP1137-20121227|6549_1  [L=230]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (230 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        65  (0.0158459); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.16s 00:00:00.37 Elapsed: 00:00:00.34
# Mc/sec: 892.87
//
Query:       MMETSP1137-20121227|6550_1  [L=208]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (208 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        52  (0.0126767); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.12s 00:00:00.32 Elapsed: 00:00:00.31
# Mc/sec: 885.60
//
Query:       MMETSP1137-20121227|6551_1  [L=593]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (593 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       304  (0.0741102); expected 82.0 (0.02)
Passed bias filter:                       36  (0.00877621); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.14s 00:00:00.55 Elapsed: 00:00:00.47
# Mc/sec: 1665.31
//
Query:       MMETSP1137-20121227|6552_1  [L=197]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (197 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        92  (0.0224281); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.15s 00:00:00.34 Elapsed: 00:00:00.30
# Mc/sec: 866.73
//
Query:       MMETSP1137-20121227|6553_1  [L=253]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (253 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        60  (0.014627); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.13s 00:00:00.34 Elapsed: 00:00:00.35
# Mc/sec: 954.09
//
Query:       MMETSP1137-20121227|6554_1  [L=139]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (139 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       122  (0.0297416); expected 82.0 (0.02)
Passed bias filter:                      103  (0.0251097); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.11s 00:00:00.28 Elapsed: 00:00:00.46
# Mc/sec: 398.84
//
Query:       MMETSP1137-20121227|6555_1  [L=187]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.011   13.8  14.8      0.012   13.7   9.0    2.1  2  TIGR01031 rpmF_bact: ribosomal protein L32


Domain annotation for each model (and alignments):
>> TIGR01031  rpmF_bact: ribosomal protein L32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0      0.53   2.2e+03      27      36 ..      42      51 ..      38      57 .. 0.73
   2 ?   13.7   9.0     3e-06     0.012       1      45 [.     127     176 ..     127     186 .. 0.71

  Alignments for each domain:
  == domain 1    score: -3.1 bits;  conditional E-value: 0.53
   TIGR01031 27 lvecpncGel 36
                l++c++ G++
  MMETSP1137-20121227|6555_1 42 LSKCKELGST 51
                6778888775 PP

  == domain 2    score: 13.7 bits;  conditional E-value: 3e-06
   TIGR01031   1 AVPkrkt.SksrkrkRRshdaklkapt....lvecpncGelklpHrvcks 45 
                 A Pk+++ Sk+rk+kRR    + + ++    l  cp c  l+ pHrvc +
  MMETSP1137-20121227|6555_1 127 AAPKKRVsSKQRKKKRRLGRLRQAGTQikscLYMCPVCERLRAPHRVCER 176
                 77999973699*****9986554444411115569*************74 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (187 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        72  (0.0175524); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.18u 0.13s 00:00:00.31 Elapsed: 00:00:00.35
# Mc/sec: 705.20
//
Query:       MMETSP1137-20121227|6556_1  [L=410]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (410 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       106  (0.0258411); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.13s 00:00:00.42 Elapsed: 00:00:00.44
# Mc/sec: 1229.90
//
Query:       MMETSP1137-20121227|6557_1  [L=238]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.8e-19   66.3   2.7    3.8e-19   66.3   1.9    2.3  2  TIGR00012 L29: ribosomal protein L29


Domain annotation for each model (and alignments):
>> TIGR00012  L29: ribosomal protein L29
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.3   1.9   9.3e-23   3.8e-19       1      56 []      25      81 ..      25      81 .. 0.99
   2 ?    0.8   1.3     0.027   1.1e+02       1      29 [.     101     129 ..     101     135 .. 0.89

  Alignments for each domain:
  == domain 1    score: 66.3 bits;  conditional E-value: 9.3e-23
   TIGR00012  1 elrekskeELakklkelKkeLfeLRfqkatgqle.kphrIrqvRrdIARllTvlrek 56
                elr k+k +L+k+l+e K eL++LR+ k+tg+++ k+++I+ vR+ IAR+lTv+++k
  MMETSP1137-20121227|6557_1 25 ELRSKNKXDLLKQLDEMKSELASLRVAKVTGGAAsKLSKIKIVRKSIARVLTVINQK 81
                8******************************************************97 PP

  == domain 2    score: 0.8 bits;  conditional E-value: 0.027
   TIGR00012   1 elrekskeELakklkelKkeLfeLRfqka 29 
                 +lr+k+   +   l + +k   +L+ qk+
  MMETSP1137-20121227|6557_1 101 DLRKKQTRAIRRALTKXEKSIKTLKQQKK 129
                 69999999999999999999999999985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (238 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       279  (0.0680156); expected 82.0 (0.02)
Passed bias filter:                      143  (0.034861); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.21u 0.17s 00:00:00.38 Elapsed: 00:00:00.37
# Mc/sec: 849.01
//
Query:       MMETSP1137-20121227|6558_1  [L=182]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (182 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        69  (0.0168211); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.13s 00:00:00.31 Elapsed: 00:00:00.31
# Mc/sec: 774.90
//
Query:       MMETSP1137-20121227|6560_1  [L=253]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (253 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        74  (0.01804); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.19s 00:00:00.35 Elapsed: 00:00:00.33
# Mc/sec: 1011.92
//
Query:       MMETSP1137-20121227|6562_1  [L=207]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.2e-13   45.9   0.0      5e-13   45.6   0.0    1.0  1  TIGR02917 PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein
    9.9e-05   19.9   0.0    0.00014   19.5   0.0    1.2  1  TIGR02552 LcrH_SycD: type III secretion low calcium response chaperone LcrH/SycD
    0.00055   18.4   0.0      0.032   12.7   0.0    1.8  2  TIGR02795 tol_pal_ybgF: tol-pal system protein YbgF
    0.00081   16.8   0.0     0.0097   13.3   0.0    2.0  2  TIGR02521 type_IV_pilW: type IV pilus biogenesis/stability protein PilW
     0.0012   15.0   0.0     0.0014   14.7   0.0    1.0  1  TIGR03939 PGA_TPR_OMP: poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA


Domain annotation for each model (and alignments):
>> TIGR02917  PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.6   0.0   6.1e-16     5e-13     427     546 ..      50     172 ..      33     187 .. 0.88

  Alignments for each domain:
  == domain 1    score: 45.6 bits;  conditional E-value: 6.1e-16
   TIGR02917 427 dpellraellLilsyLrsgefdkalaaakklekkqpdnaslynllgaiylgkkdlakAreafekALkiepdffpAlanLArldlqekniddAkqrfekvlaidpkn...lkallaLaelaark 546
                 ++     ++lL+++  r+ge+  a   a+  ++++pd+ ++  l g +++ + +l++A  afe  L iep++    + L +++l  + i+dA+ +fe+vl+ +p +   ++++  L+el a+ 
  MMETSP1137-20121227|6562_1  50 EDGIEGQRRLLAIALARAGELTVAEPHARCVLESKPDDVEMLFLTGVAHQSRDELDEALDAFESVLAIEPGHWRTNFHLGKMALGVGMIKDAQSYFEEVLKSNPSHepsVEIMSRLFELDAEA 172
                 5455556789999999****************************************************************************************9855567788888887654 PP

>> TIGR02552  LcrH_SycD: type III secretion low calcium response chaperone LcrH/SycD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.0   1.7e-07   0.00014      54     120 ..      90     156 ..      60     168 .. 0.85

  Alignments for each domain:
  == domain 1    score: 19.5 bits;  conditional E-value: 1.7e-07
   TIGR02552  54 ywlgLaaclqalkeyeeAiaaYalaaaldlddprpvyhaaecllalgekeeAlkaLklaieiaeeke 120
                  ++  ++++q  +e +eA++a++  +a+++ + r  +h+++  l +g  ++A++ ++ +++   + e
  MMETSP1137-20121227|6562_1  90 MLFLTGVAHQSRDELDEALDAFESVLAIEPGHWRTNFHLGKMALGVGMIKDAQSYFEEVLKSNPSHE 156
                 55666899***************************************************99887544 PP

>> TIGR02795  tol_pal_ybgF: tol-pal system protein YbgF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.7   0.0   3.9e-05     0.032      43     114 ..      92     160 ..      87     165 .. 0.79
   2 !   10.5   0.0   0.00018      0.15      42      98 ..     125     181 ..     121     183 .. 0.83

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 3.9e-05
   TIGR02795  43 YwlGealyakkkykdAakaflevvkkypksekapdallklgeslqelgqkekAkktlqevikrYPkssaakl 114
                 +++G a  ++ ++++A +af++v++  p + ++    + lg+++   g  ++A+++++ev k  P+ + +++
  MMETSP1137-20121227|6562_1  92 FLTGVAHQSRDELDEALDAFESVLAIEPGHWRTN---FHLGKMALGVGMIKDAQSYFEEVLKSNPSHEPSVE 160
                 6778888889999999999999999888877765...56677777888888899999999999998877665 PP

  == domain 2    score: 10.5 bits;  conditional E-value: 0.00018
   TIGR02795  42 qYwlGealyakkkykdAakaflevvkkypksekapdallklgeslqelgqkekAkkt 98 
                 ++ lG++ +  + +kdA+ +f+ev+k++p++e + + + +l e+ +e  +++ A +t
  MMETSP1137-20121227|6562_1 125 NFHLGKMALGVGMIKDAQSYFEEVLKSNPSHEPSVEIMSRLFELDAEAVESDIAEAT 181
                 6899999999*******************9999888888877777666666666665 PP

>> TIGR02521  type_IV_pilW: type IV pilus biogenesis/stability protein PilW
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   0.0   1.2e-05    0.0097      37     129 ..      60     152 ..      29     158 .. 0.85
   2 !    6.4   0.0    0.0015       1.2     136     178 ..     123     165 ..     119     183 .. 0.81

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 1.2e-05
   TIGR02521  37 LaleYleqgdlekAkenlekAleldpkdadanlalAlyyqqlgelekAeesfrkAltlkpnngdvlNNYGtFLcqqkkyeeAeqqfeaAiedp 129
                 La++  ++g+l++A       le++p+d +     +++ q+  el++A ++f+  l+++p   + +   G      + +++A+ +fe+ ++++
  MMETSP1137-20121227|6562_1  60 LAIALARAGELTVAEPHARCVLESKPDDVEMLFLTGVAHQSRDELDEALDAFESVLAIEPGHWRTNFHLGKMALGVGMIKDAQSYFEEVLKSN 152
                 78888899999999999999**************************************99999988888999999999999999999877765 PP

  == domain 2    score: 6.4 bits;  conditional E-value: 0.0015
   TIGR02521 136 rsyeNaglcalkagdtekaekyltralkidpkrpesllelael 178
                 r++  +g  al  g  + a++y+++ lk +p+  +s+  + +l
  MMETSP1137-20121227|6562_1 123 RTNFHLGKMALGVGMIKDAQSYFEEVLKSNPSHEPSVEIMSRL 165
                 6666678888999999****************99998877655 PP

>> TIGR03939  PGA_TPR_OMP: poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0   1.7e-06    0.0014     398     506 ..      57     165 ..      41     182 .. 0.92

  Alignments for each domain:
  == domain 1    score: 14.7 bits;  conditional E-value: 1.7e-06
   TIGR03939 398 qslkvlllaysgdlseAekkleellatAPgNqslrlalaeveraRgwprrAeqllkkaeslepdslsaergqaetaldlqewrqaealiddlvaryPedkqvqrLarrl 506
                 + l + +la +g+l  Ae +++ +l++ P + ++    +   ++R+  ++A ++++ + ++ep    ++  ++++al ++  + a+   +++ +  P ++ + +++ rl
  MMETSP1137-20121227|6562_1  57 RRLLAIALARAGELTVAEPHARCVLESKPDDVEMLFLTGVAHQSRDELDEALDAFESVLAIEPGHWRTNFHLGKMALGVGMIKDAQSYFEEVLKSNPSHEPSVEIMSRL 165
                 5678899999******************************************************************************************999998776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (207 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       143  (0.034861); expected 82.0 (0.02)
Passed bias filter:                      134  (0.032667); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.23u 0.23s 00:00:00.46 Elapsed: 00:00:00.44
# Mc/sec: 620.95
//
Query:       MMETSP1137-20121227|6563_1  [L=296]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.5e-65  218.3   0.0      8e-61  203.9   0.0    2.0  2  TIGR00928 purB: adenylosuccinate lyase
    1.1e-05   22.4   0.0    1.6e-05   21.8   0.0    1.4  1  TIGR02426 protocat_pcaB: 3-carboxy-cis,cis-muconate cycloisomerase
  ------ inclusion threshold ------
      0.017   11.7   0.0      0.024   11.2   0.0    1.1  1  TIGR00979 fumC_II: fumarate hydratase, class II


Domain annotation for each model (and alignments):
>> TIGR00928  purB: adenylosuccinate lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.3   0.0   8.2e-06     0.011      85     104 ..      13      32 ..       7      35 .. 0.87
   2 !  203.9   0.0   5.8e-64     8e-61     187     430 ..      57     291 ..      50     295 .. 0.94

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 8.2e-06
   TIGR00928  85 gaesefiHfGlTSedivdta 104
                 +++ ef+Hf++TSedi++++
  MMETSP1137-20121227|6563_1  13 QDNLEFFHFACTSEDINNLS 32 
                 57889*************87 PP

  == domain 2    score: 203.9 bits;  conditional E-value: 5.8e-64
   TIGR00928 187 vgtqaaaleev...eeveelvtelLGlktalistQiiqrdrhaellaalallaatleklavdirllqrtevleveekfekgqvGSSaMPhKrNpidsErveGlarvirsvlsaalekv.vlwheRdltdSsveRviLpdsliladiilksllkvvkkLvvypenikrnLelelgllasekvlielvekglgreeayeivkelamkaaeveeedlkelvkedeeitkelkeeelaelldpetyigaaae 430
                 ++++ +a ++    ++  ++v + LGl  ++++tQi+++d +ael++a  ++++ l ++a+d++ +++ ++++++++ +  +vGSS+MPhK+Npid+E++eG+++++++++s++++k+ +++++RdltdS+v R+ L++++ +a i+++sllk+++k+++++   + +Le ++++la++   +++v++  g e++ye++kel+++  +v++e ++++v+ +e i++  ke++la  l+p++y+g+aa+
  MMETSP1137-20121227|6563_1  57 YNAHVSACPDSdwpTFAKRFVES-LGLSHNPYVTQIEPHDFIAELFHAFERFNTVLLDFARDMWTYISKGYFKQRVIKG--EVGSSTMPHKVNPIDFENAEGNLGLANAIFSHLSAKLpISRMQRDLTDSTVMRN-LGVAFGHAIIAYQSLLKGMTKVQINES--AXDLESNWEVLAEP---VQTVMRVHGVESPYEKLKELTRG-QRVNAEGMRKFVESLE-IPQDAKERLLA--LTPANYLGHAAA 291
                 78888888888886666666655.**************************************************99977..******************************************************.*************************98..589***********...***********************.888************9.**********9..********9986 PP

>> TIGR02426  protocat_pcaB: 3-carboxy-cis,cis-muconate cycloisomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.8   0.0   1.2e-08   1.6e-05     204     289 ..      74     161 ..      63     207 .. 0.72

  Alignments for each domain:
  == domain 1    score: 21.8 bits;  conditional E-value: 1.2e-08
   TIGR02426 204 ealAaelgLeapalpWhtq...rdriaelaaaLalvagalgkiaqDvallaqtevgevle.aggGGSSampHKrNPvaaevlaaaarrap 289
                 +++ + lgL++  +p+ tq    d+iael +a+      l  +a+D+ +       + +  +g  GSS+mpHK NP+  e + +    a 
  MMETSP1137-20121227|6563_1  74 KRFVESLGLSH--NPYVTQiepHDFIAELFHAFERFNTVLLDFARDMWTYISKGYFKQRViKGEVGSSTMPHKVNPIDFENAEGNLGLAN 161
                 55666777765..4444442237899*********************987666655444438889***********98776655444444 PP

>> TIGR00979  fumC_II: fumarate hydratase, class II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   1.8e-05     0.024     263     329 ..      89     152 ..      73     156 .. 0.84

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 1.8e-05
   TIGR00979 263 ealaahdalveahGalkalaasllkiandirflasGPrcGlgelllPenePGssimPGkvnPtqsea 329
                 + +  hd ++e   a++ + + ll  a+d+    s    G+    + + e Gss mP kvnP   e+
  MMETSP1137-20121227|6563_1  89 TQIEPHDFIAELFHAFERFNTVLLDFARDMWTYIS---KGYFKQRVIKGEVGSSTMPHKVNPIDFEN 152
                 5667899999999999999999*****99965555...4788888999**************98875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (296 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        86  (0.0209654); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.24u 0.20s 00:00:00.44 Elapsed: 00:00:00.31
# Mc/sec: 1260.28
//
Query:       MMETSP1137-20121227|6564_1  [L=282]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (282 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       236  (0.0575329); expected 82.0 (0.02)
Passed bias filter:                      100  (0.0243784); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.19s 00:00:00.42 Elapsed: 00:00:00.41
# Mc/sec: 907.83
//
Query:       MMETSP1137-20121227|6565_1  [L=131]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00023   18.2   0.3    0.00027   17.9   0.2    1.1  1  TIGR00225 prc: C-terminal processing peptidase
     0.0021   14.9   0.1     0.0023   14.8   0.1    1.0  1  TIGR02037 degP_htrA_DO: peptidase Do


Domain annotation for each model (and alignments):
>> TIGR00225  prc: C-terminal processing peptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.2   1.3e-07   0.00027      62     117 ..      18      77 ..       3      94 .. 0.75

  Alignments for each domain:
  == domain 1    score: 17.9 bits;  conditional E-value: 1.3e-07
   TIGR00225  62 d...eivivsplegsPAekag.ikpgDkIikvdgksvagmelddavelirGkkgtkvkle 117
                 +   ++ iv + eg PA k g +k+gD + kv++ +v+++       + +G +gt+  +e
  MMETSP1137-20121227|6565_1  18 EykgKVCIVRLHEGYPAIKCGaVKVGDVVSKVNDVEVDSIAGALEQCKCKGGRGTDEVVE 77 
                 25559*****************************98887654333347788888864444 PP

>> TIGR02037  degP_htrA_DO: peptidase Do
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.1   1.1e-06    0.0023     261     338 ..      23     103 ..      10     129 .. 0.66

  Alignments for each domain:
  == domain 1    score: 14.8 bits;  conditional E-value: 1.1e-06
   TIGR02037 261 alvaevlkgspAekaG.lkaGDvilkvngkkiksaadlreai.gtlkpgkkvklki.lRkgkekeikvtlkeaeeekasse 338
                 + + ++ +g pA k G +k+GDv+ kvn+ +++s a   e+   +   g+   +++ +  +++ ++   +++a+ +k++s+
  MMETSP1137-20121227|6565_1  23 VCIVRLHEGYPAIKCGaVKVGDVVSKVNDVEVDSIAGALEQCkCKGGRGTDEVVEVtIIANASAHVPADVANAPAAKEASS 103
                 5678899999**998769***************987554444144455554444431234455667777776666555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (131 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       139  (0.0338859); expected 82.0 (0.02)
Passed bias filter:                      114  (0.0277913); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.18u 0.18s 00:00:00.36 Elapsed: 00:00:00.27
# Mc/sec: 640.39
//
Query:       MMETSP1137-20121227|6566_1  [L=142]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (142 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        90  (0.0219405); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.16s 00:00:00.35 Elapsed: 00:00:00.26
# Mc/sec: 720.86
//
Query:       MMETSP1137-20121227|6567_1  [L=118]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (118 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        77  (0.0187713); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.16s 00:00:00.32 Elapsed: 00:00:00.37
# Mc/sec: 420.94
//
Query:       MMETSP1137-20121227|6568_1  [L=362]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.9e-37  126.5   0.0    2.2e-36  123.0   0.0    2.0  1  TIGR02251 HIF-SF_euk: dullard-like phosphatase domain
    1.4e-05   23.1   0.0    3.9e-05   21.7   0.0    1.7  1  TIGR02250 FCP1_euk: FCP1-like phosphatase, phosphatase domain


Domain annotation for each model (and alignments):
>> TIGR02251  HIF-SF_euk: dullard-like phosphatase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  123.0   0.0   1.1e-39   2.2e-36       2     168 .]      91     299 ..      90     299 .. 0.85

  Alignments for each domain:
  == domain 1    score: 123.0 bits;  conditional E-value: 1.1e-39
   TIGR02251   2 ktlvLDLDeTLvhs.....................slkkakaieadlklevliek.....................................kiilvyVlkRPyvdeFlerl..sklyelvvfTasleeYadkvldildakkkvlsrrlyRescvetngkyvKdlslvkkdlskvviiDnsplsyslqpeNaipiksfisdenDeeLlklipflealrkeddvrsll 168
                 ++lvLDLDeTLv                       +                                                         + ++ V  RP+v   l+ l  s  + ++v+Ta+ ++Yad+vld l+ + +vl+rrly ++c    + ++Kdl+ ++  ls+++++Dnsp++y+ qpe a+pi s+  d +D+++l+li +l ++++ +dvr+ll
  MMETSP1137-20121227|6568_1  91 HILVLDLDETLVRVqplslgqqaasmkqappavktR------------------PgsrakratlrlgrrlsqlqphhvrgtrrfivhagtgdAKQKLEVSVRPHVPVLLNYLrrSGAWHVIVWTAAEKSYADAVLDGLEGNARVLTRRLYQQHCAIGPTGFIKDLRHLGCPLSRTLLVDNSPVTYAAQPESAVPISSWLGDASDRAILELIALLRQASTLQDVRPLL 299
                 689*********998886655444333333222220..................13344556666677777788888888889999999998999999********9999772245799*********************************************************************************************************975 PP

>> TIGR02250  FCP1_euk: FCP1-like phosphatase, phosphatase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.7   0.0   1.9e-08   3.9e-05       3     106 ..      87     221 ..      85     263 .. 0.77

  Alignments for each domain:
  == domain 1    score: 21.7 bits;  conditional E-value: 1.9e-08
   TIGR02250   3 rekkLvLvlDlDqtlihttkeselseeekkkkeekeseklkdlkkfklee.............................kleylvklRPfvkeflk..kvsklyelhvytmgtraYakeiakllDPekklFgdri 106
                  ++k +LvlDlD+tl+  +  s  +++ ++k+  ++ +++ + +  + +                              k ++ v +RP+v  +l+  + s  +++ v+t ++++Ya ++++ l+ ++++   r+
  MMETSP1137-20121227|6568_1  87 GAQKHILVLDLDETLVRVQPLSLGQQAASMKQAPPAVKTRPGSRAKRATLrlgrrlsqlqphhvrgtrrfivhagtgdaKQKLEVSVRPHVPVLLNylRRSGAWHVIVWTAAEKSYADAVLDGLEGNARVLTRRL 221
                 57899************998887777766555555554433322222222345688999999****************989999*******999983345789999**************998888887777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (362 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        74  (0.01804); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.30u 0.17s 00:00:00.47 Elapsed: 00:00:00.49
# Mc/sec: 975.10
//
Query:       MMETSP1137-20121227|6569_1  [L=296]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (296 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.10s 00:00:00.34 Elapsed: 00:00:00.51
# Mc/sec: 766.05
//
Query:       MMETSP1137-20121227|6570_1  [L=170]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (170 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       121  (0.0294978); expected 82.0 (0.02)
Passed bias filter:                       96  (0.0234032); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.16s 00:00:00.34 Elapsed: 00:00:00.44
# Mc/sec: 509.96
//
Query:       MMETSP1137-20121227|6571_1  [L=211]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (211 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        59  (0.0143832); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.14s 00:00:00.34 Elapsed: 00:00:00.36
# Mc/sec: 773.60
//
Query:       MMETSP1137-20121227|6572_1  [L=65]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.9e-15   54.3   0.0    2.2e-15   54.1   0.0    1.0  1  TIGR00262 trpA: tryptophan synthase, alpha subunit


Domain annotation for each model (and alignments):
>> TIGR00262  trpA: tryptophan synthase, alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.1   0.0   5.3e-19   2.2e-15       1      52 [.       9      60 ..       9      64 .. 0.94

  Alignments for each domain:
  == domain 1    score: 54.1 bits;  conditional E-value: 5.3e-19
   TIGR00262  1 fetlkkkeekafvpFvtagdPdleksleiiktlvkaGadalElGvpfsDPla 52
                f + ++++  afv F+tag+P+l++++ei+  +++ G+d++ElGvpf DPla
  MMETSP1137-20121227|6572_1  9 FTQAREAGRAAFVGFITAGYPTLDNTVEIMLGMQRGGTDIIELGVPFTDPLA 60
                678899999******************************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (65 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        52  (0.0126767); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.12u 0.14s 00:00:00.26 Elapsed: 00:00:00.38
# Mc/sec: 225.77
//
Query:       MMETSP1137-20121227|6573_1  [L=293]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.9e-07   29.3   0.2    3.3e-07   28.6   0.1    1.4  1  TIGR02196 GlrX_YruB: glutaredoxin-like protein, YruB-family
    2.3e-05   22.6   0.0    5.2e-05   21.4   0.0    1.7  1  TIGR02200 GlrX_actino: glutaredoxin-like protein
    6.6e-05   20.9   0.1    0.00014   19.9   0.1    1.5  1  TIGR02181 GRX_bact: glutaredoxin 3
    0.00066   17.2   0.1       0.06   10.8   0.0    2.2  2  TIGR01262 maiA: maleylacetoacetate isomerase
     0.0015   16.2   1.1      0.006   14.2   0.8    1.8  1  TIGR02182 GRXB: glutaredoxin, GrxB family
     0.0029   15.6   0.3     0.0064   14.6   0.2    1.6  1  TIGR02180 GRX_euk: glutaredoxin
     0.0047   15.0   0.1     0.0092   14.0   0.0    1.5  1  TIGR02194 GlrX_NrdH: glutaredoxin-like protein NrdH
  ------ inclusion threshold ------
      0.035   12.2   0.1      0.084   11.0   0.0    1.6  1  TIGR01617 arsC_related: transcriptional regulator, Spx/MgsR family
      0.048   11.5   0.4       0.11   10.3   0.0    1.9  2  TIGR02190 GlrX-dom: glutaredoxin-family domain


Domain annotation for each model (and alignments):
>> TIGR02196  GlrX_YruB: glutaredoxin-like protein, YruB-family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.6   0.1   7.2e-10   3.3e-07       1      57 [.      49     103 ..      49     113 .. 0.82

  Alignments for each domain:
  == domain 1    score: 28.6 bits;  conditional E-value: 7.2e-10
   TIGR02196   1 kvkvYttpwCppCkkakeyLkskgiafeeidvekdsaaaeellkklgqrsvPvivig 57 
                 +v++Y  + Cp C+k+k++L  + +++e++dv+  ++   +  k  + r vP++v+ 
  MMETSP1137-20121227|6573_1  49 TVRIYQYEICPFCNKIKAMLDLHKVPYETVDVNPLMKKEIKFSK--DYRRVPIAVVS 103
                 599*****************************876666555444..45668887775 PP

>> TIGR02200  GlrX_actino: glutaredoxin-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   0.0   1.1e-07   5.2e-05       1      33 [.      49      81 ..      49     108 .. 0.94

  Alignments for each domain:
  == domain 1    score: 21.4 bits;  conditional E-value: 1.1e-07
   TIGR02200  1 kvtvYatswCgyCaslkrtLdkdgaeYevvdie 33
                +v +Y  + C++C+++k  Ld + ++Ye+vd++
  MMETSP1137-20121227|6573_1 49 TVRIYQYEICPFCNKIKAMLDLHKVPYETVDVN 81
                589****************************96 PP

>> TIGR02181  GRX_bact: glutaredoxin 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.1   3.1e-07   0.00014       1      36 [.      50      85 ..      50     104 .. 0.79

  Alignments for each domain:
  == domain 1    score: 19.9 bits;  conditional E-value: 3.1e-07
   TIGR02181  1 vviYtkksCpycsrAkalLeekgvefeeievdkdke 36
                v iY  + Cp+c++ ka+L+ ++v +e ++v+   +
  MMETSP1137-20121227|6573_1 50 VRIYQYEICPFCNKIKAMLDLHKVPYETVDVNPLMK 85
                78*************************999975443 PP

>> TIGR01262  maiA: maleylacetoacetate isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.8   0.0   0.00013      0.06      12      89 ..      62     138 ..      51     147 .. 0.79
   2 ?    4.4   0.0     0.012       5.5     150     176 ..     234     260 ..     204     273 .. 0.82

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 0.00013
   TIGR01262  12 yRvRiaLaLkgidyesvpvnLlkdGeqkkeefkalNPqelvPtLkidegevltqSlAiieyLeetypepaLlpkdpak 89 
                  +++  L+L+++ ye+v vn l + e k ++  ++ P++ v     + +e +++S  i   L e++ e++++++ +a+
  MMETSP1137-20121227|6573_1  62 NKIKAMLDLHKVPYETVDVNPLMKKEIKFSKDYRRVPIAVVSSGSGE-EEQINDSPVIAASLLERMKEKNVISASEAD 138
                 577888**************555446666666667799999988877.6***********999999999999876654 PP

  == domain 2    score: 4.4 bits;  conditional E-value: 0.012
   TIGR01262 150 agafcvGdevtladvcLvpqvynAerf 176
                 a  f+ G+++ +ad+c+  +v + er 
  MMETSP1137-20121227|6573_1 234 ASPFAGGAKPNFADICVYGAVKAIERT 260
                 4569**************999998885 PP

>> TIGR02182  GRXB: glutaredoxin, GrxB family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.8   1.3e-05     0.006       2     137 ..      52     203 ..      51     211 .. 0.55

  Alignments for each domain:
  == domain 1    score: 14.2 bits;  conditional E-value: 1.3e-05
   TIGR02182   2 LyiYdhCPfCvrarmifGlkniplekivL..........lnDdeetpirliGkkqvPiLqkeDgralaeslDivkyidelag..eslltdkvseeieewlekvtsylnklllPRlakl...dleefat..qsarkyftkkkeas.vgnfsalln 137
                 +y Y+ CPfC +++ +  l  +p e++ +           +D    pi ++        q +D+ ++a sl  ++ ++e++   +s   + +s++  ew +     l  ll+PR++++   +++ f    q     +++k  ++ vg+f+ +++
  MMETSP1137-20121227|6573_1  52 IYQYEICPFCNKIKAMLDLHKVPYETVDVnplmkkeikfSKDYRRVPIAVVSSGSGEEEQINDSPVIAASL--LERMKEKNVisASEADEFRSPKAMEWAKWSDEKLAVLLFPRMTRTfseSFQAFGYvmQVPHFSWVDKISNQiVGSFAMWMA 203
                 799********************987543110000000033444444444444444444445555555554..222322222223444555788888999988899999999988776111344443211333445666655442466666665 PP

>> TIGR02180  GRX_euk: glutaredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.2   1.4e-05    0.0064       1      36 [.      50      83 ..      50      94 .. 0.85

  Alignments for each domain:
  == domain 1    score: 14.6 bits;  conditional E-value: 1.4e-05
   TIGR02180  1 VvvfsKsyCpYckkakelLkklkvkkalevveldkl 36
                V +++   Cp+c+k+k++L+  kv   +e+v+++ l
  MMETSP1137-20121227|6573_1 50 VRIYQYEICPFCNKIKAMLDLHKVP--YETVDVNPL 83
                5689999*************88788..999999865 PP

>> TIGR02194  GlrX_NrdH: glutaredoxin-like protein NrdH
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.0     2e-05    0.0092       1      53 [.      50     101 ..      50     109 .. 0.78

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 2e-05
   TIGR02194   1 itvysknnCvqCkatkkaleeqniafeeinideqpeavdyvkelGfravPViv 53 
                 + +y  + C  C+  k +l+ +++ +e+++++   ++ +   +  +r vP+ v
  MMETSP1137-20121227|6573_1  50 VRIYQYEICPFCNKIKAMLDLHKVPYETVDVNPLMKK-EIKFSKDYRRVPIAV 101
                 67999999**********************9855433.334466788888755 PP

>> TIGR01617  arsC_related: transcriptional regulator, Spx/MgsR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00018     0.084       1      31 [.      50      80 ..      50      91 .. 0.89

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 0.00018
   TIGR01617  1 iklygipncttckkarrwLeangieyeeidl 31
                +++y+++ c  c k ++ L+ ++++ye  d+
  MMETSP1137-20121227|6573_1 50 VRIYQYEICPFCNKIKAMLDLHKVPYETVDV 80
                589************************9886 PP

>> TIGR02190  GlrX-dom: glutaredoxin-family domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.1       2.6   1.2e+03      40      53 ..       7      20 ..       5      29 .. 0.68
   2 ?   10.3   0.0   0.00025      0.11      10      39 ..      50      79 ..      43     103 .. 0.84

  Alignments for each domain:
  == domain 1    score: -2.6 bits;  conditional E-value: 2.6
   TIGR02190 40 Lgkdirtrslravt 53
                L++ +r+r++ av 
  MMETSP1137-20121227|6573_1  7 LQRIVRSRTVAAVG 20
                67778888888774 PP

  == domain 2    score: 10.3 bits;  conditional E-value: 0.00025
   TIGR02190 10 vsvftkpGCPfCakakavLkekGldfeeiv 39
                v ++    CPfC k ka+L  + + +e + 
  MMETSP1137-20121227|6573_1 50 VRIYQYEICPFCNKIKAMLDLHKVPYETVD 79
                55666677***********99988887764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (293 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       133  (0.0324232); expected 82.0 (0.02)
Passed bias filter:                      127  (0.0309605); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         9  (0.00219405); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.27u 0.16s 00:00:00.43 Elapsed: 00:00:00.46
# Mc/sec: 840.71
//
Query:       MMETSP1137-20121227|6574_1  [L=441]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0031   14.7   0.0     0.0062   13.7   0.0    1.4  1  TIGR03215 ac_ald_DH_ac: acetaldehyde dehydrogenase (acetylating)


Domain annotation for each model (and alignments):
>> TIGR03215  ac_ald_DH_ac: acetaldehyde dehydrogenase (acetylating)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   0.0   1.5e-06    0.0062       4      92 ..      66     154 ..      64     171 .. 0.86

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 1.5e-06
   TIGR03215   4 vaiiGsGnigtdllikllrsevlelallvGidpesdGlar.arelgvetsaeGvdalleeedidivfdatsakahaenaklleelgkivi 92 
                 v+++G G ig+  +  + r   l  ++ +G  +++d l+  a++ gv+  +     +++++d++ v+    ++ hae+ ++ +elgk + 
  MMETSP1137-20121227|6574_1  66 VGVVGCGRIGIVHMDTIRRCP-LAKVVSIGGSSNADNLKTiAEKYGVDHYSTDSAEVIAHPDVQAVWICSPSQYHAEQIRQAAELGKDIF 154
                 789********9998887765.5666677888999999854999******9999**************************9999998775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (441 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       117  (0.0285227); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.32u 0.15s 00:00:00.47 Elapsed: 00:00:00.90
# Mc/sec: 646.75
//
Query:       MMETSP1137-20121227|6575_1  [L=688]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.2e-08   29.9   2.8    2.1e-06   25.0   0.9    6.5  6  TIGR00601 rad23: UV excision repair protein Rad23


Domain annotation for each model (and alignments):
>> TIGR00601  rad23: UV excision repair protein Rad23
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.0   0.9   5.2e-10   2.1e-06      42     134 ..      16     112 ..       8     125 .. 0.61
   2 !    5.6   7.8    0.0004       1.7     224     307 ..     105     181 ..      95     187 .. 0.71
   3 !    4.7   2.0   0.00078       3.2     251     300 ..     174     227 ..     166     247 .. 0.73
   4 ?   -9.9  14.4         1   4.1e+03      81     125 ..     357     394 ..     331     420 .. 0.48
   5 ?   -2.1   8.2     0.092   3.8e+02      73     143 ..     405     475 ..     398     498 .. 0.72
   6 !   13.0   0.0   2.4e-06    0.0098     134     195 ..     515     578 ..     500     584 .. 0.79

  Alignments for each domain:
  == domain 1    score: 25.0 bits;  conditional E-value: 5.2e-10
   TIGR00601  42 aqqkLiyaGkiLsDdktvkeykikekdfvvvmvskkKavkakaaePaatpesaptptpsatpasva....ekk.saaPasaveeessaeeeatatale 134
                 + q+ iy Gk+L+D  t+ + ++ ++  + v+ + +  + a+aa+ + +p++ ++ +  at+ s a    +++  a+Pa+a+ ++  ++ +a+a+a +
  MMETSP1137-20121227|6575_1  16 NAQRFIYKGKVLKDGLTLDDAGVVDGAVIHVVRGAPPPSAATAAPNTNAPNADAANGN-ATNGSAAngnaNASgDAPPATAALPGAAPPPQAAAAAAA 112
                 4699*********************998888877776666444444445555444443.444333300003331455666777776655555444443 PP

  == domain 2    score: 5.6 bits;  conditional E-value: 0.0004
   TIGR00601 224 ddvaaaaaqaeteeaateaasGedpleflrnqpqfqqlRqvvqqnPelLealLqqigkenPqLlqqisqhqEeFlqllnEpvee 307
                 ++ aaaaa ++t+ +  + +s  + l+++  q+q qq+ q++  nPe+++ +++        ++q+i++++E   ++l+  ++ 
  MMETSP1137-20121227|6575_1 105 QAAAAAAA-GGTRASPFGGSSSLGLLGLGGGQQQQQQMQQMLLDNPEMMQQMMN------SPIMQNIMNNPEMMRSMLLSNPQM 181
                 33333333.4444444444445667788899*****************999974......457899999999999999877664 PP

  == domain 3    score: 4.7 bits;  conditional E-value: 0.00078
   TIGR00601 251 flrnqpqfqqlRqvvqqnPelL.....ealLqqi..gkenPqLlqqisqhqEeFlql 300
                 +l+++pq   + qv++ nPel      +alL+q   +++nPqL+++++++ ++ ++ 
  MMETSP1137-20121227|6575_1 174 MLLSNPQ---MQQVMDDNPELAhvlndPALLRQSleTARNPQLMREMMRNTDRAMSN 227
                 5666666...568999***97522244578877434689**********99876655 PP

  == domain 4    score: -9.9 bits;  conditional E-value: 1
   TIGR00601  81 kakaaePaatpesaptptpsatpasvaekksaaPasaveeessae 125
                 +++a++P++tp++ p  tp+       + +s++P+sa++  s a+
  MMETSP1137-20121227|6575_1 357 RTAASTPTSTPTTMPIHTPT-------SIPSPTPPSAASAASAAT 394
                 23334444444444444442.......222222322222222222 PP

  == domain 5    score: -2.1 bits;  conditional E-value: 0.092
   TIGR00601  73 mvskkKavkakaaePaatpesaptptp.satpasvaekksaaPasaveeessaeeeatatalesedtsaese 143
                 m+ ++ +  + aa+ a +pe a + +   a +as a+++++ Pa a +++ ++  +a+a a++++++s++  
  MMETSP1137-20121227|6575_1 405 MMQQHASL-GGAASAAGQPEGARAHAHaHAHAASQAAANAPRPAQAHAPSPTTATSAAAGAPHAHQGSSPFG 475
                 55544444.466667778888888777678889999999999999999999999888888888888777644 PP

  == domain 6    score: 13.0 bits;  conditional E-value: 2.4e-06
   TIGR00601 134 esedtsaesegdsdre.tlvvGsereetveeimemG.yereeverAlRAafnnPdRAveYLltG 195
                 ++  +sa s++ds+r+   v+ +++ + +  + +mG ++ +   rAl A+  n + Ave Ll+G
  MMETSP1137-20121227|6575_1 515 STAPASAISNSDSGRSaHEVAAAHYASQLSTLADMGfFDADANLRALMATGGNVQAAVERLLSG 578
                 23334445566777774568899*************88************************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (688 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       163  (0.0397367); expected 82.0 (0.02)
Passed bias filter:                       97  (0.023647); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.17s 00:00:00.70 Elapsed: 00:00:00.83
# Mc/sec: 1094.08
//
Query:       MMETSP1137-20121227|6576_1  [L=496]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (496 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        50  (0.0121892); expected 82.0 (0.02)
Passed bias filter:                       40  (0.00975134); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.14s 00:00:00.45 Elapsed: 00:00:00.61
# Mc/sec: 1073.22
//
Query:       MMETSP1137-20121227|6578_1  [L=161]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (161 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       103  (0.0251097); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.14s 00:00:00.32 Elapsed: 00:00:00.50
# Mc/sec: 425.00
//
Query:       MMETSP1137-20121227|6579_1  [L=89]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (89 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        35  (0.00853242); expected 82.0 (0.02)
Passed bias filter:                       32  (0.00780107); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.19s 00:00:00.30 Elapsed: 00:00:00.34
# Mc/sec: 345.50
//
Query:       MMETSP1137-20121227|6580_1  [L=475]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.01   13.5   0.0      0.042   11.5   0.0    1.8  2  TIGR00037 eIF_5A: translation initiation factor eIF-5A


Domain annotation for each model (and alignments):
>> TIGR00037  eIF_5A: translation initiation factor eIF-5A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0     1e-05     0.042      53     110 ..     200     258 ..     190     269 .. 0.84
   2 ?   -1.5   0.0      0.11   4.5e+02      14      59 ..     321     365 ..     311     372 .. 0.68

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 1e-05
   TIGR00037  53 kkkrefvsPvtskvevPivd.rkeaqvlaidggvvqlmdleteetlevkiPeelkdsle 110
                 +++ e++ Pv + v vP+v   ++a ++a+  +vv+  +l+t  t  v+  eel ++ +
  MMETSP1137-20121227|6580_1 200 SNRAEVLGPVAKLVSVPFVGvESTAALVAVLSDVVNSRTLQTLVTRSVRGWEELRERAK 258
                 4567899************8357899***************************998755 PP

  == domain 2    score: -1.5 bits;  conditional E-value: 0.11
   TIGR00037  14 kggyvvidgepckivdisvskpGkhGaakarvvaigifdkkkrefv 59 
                  +  vv d+ ++k +  + s pG       rvva++ f+   r +v
  MMETSP1137-20121227|6580_1 321 GDTVVVEDEATAKALMRAASAPGSRV-PLGRVVALDGFQASSRGIV 365
                 44445555556677777888888764.4578999999988887776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (475 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       251  (0.0611897); expected 82.0 (0.02)
Passed bias filter:                      150  (0.0365675); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.14s 00:00:00.54 Elapsed: 00:00:00.87
# Mc/sec: 720.63
//
Query:       MMETSP1137-20121227|6581_1  [L=1138]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.5e-05   22.0   0.0      0.012   12.4   0.0    3.9  3  TIGR02800 propeller_TolB: Tol-Pal system beta propeller repeat protein TolB


Domain annotation for each model (and alignments):
>> TIGR02800  propeller_TolB: Tol-Pal system beta propeller repeat protein TolB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0      0.03   1.2e+02     178     256 ..     675     750 ..     637     753 .. 0.75
   2 !    3.4   0.0    0.0016       6.5     194     340 ..     858     998 ..     846    1008 .. 0.68
   3 !   12.4   0.0   2.9e-06     0.012     197     296 ..    1029    1124 ..    1010    1132 .. 0.49

  Alignments for each domain:
  == domain 1    score: -0.8 bits;  conditional E-value: 0.03
   TIGR02800 178 ydganqqtilrsrepllsPawSpdgqklaYvsfekkkpeiyvqdlatgkrekvas.fkginvaPafsPDGkklavslskd 256
                 +dga  +t++   + ++s   + dg  +a  s++    +  v+ +a g re+v + ++g + + +  P+ ++l+++ s+d
  MMETSP1137-20121227|6581_1 675 ADGAPLHTLIGHASMVMSACIGADGVYVATASYD---KTAAVWRVADGGRERVLKgHSGAVLSVCMTPE-NELVITASSD 750
                 6888888888888888888888888655555555...55567777777777665437899999999999.8888888876 PP

  == domain 2    score: 3.4 bits;  conditional E-value: 0.0016
   TIGR02800 194 lsPawSpdgqklaYvsfekkkpeiyvqdlatgkrekvas.fkginvaPafsPDGkklavslskdGnpdiYvmdlaskqltrltkspgidtePsfspDgksivFtSdrgGspQiYkmdadggevrrltfegsynvspsispdgkliafv 340
                 ls  +Sp+g++++  s   +  +  v+ l+ g+ e v s +   +   ++sPDG+  +++ s d    i+++  +++ +++l  ++g   + + +pDg  +v  Sd      ++ m   g++ r l+ + ++  s+++spdg +++ +
  MMETSP1137-20121227|6581_1 858 LSVCVSPEGTRVVTAS---SDKTARVWRLEDGALELVLSgHADDVTCACVSPDGN-FVLTASVDALCAIWLLK-DGSFQRKLQGHTGALRSVALTPDGVHVVTASDDKT-VRVWLMA-CGTQLRVLEGHTDRVSSAVVSPDGLHVVTA 998
                 5555677777765333...333446788888887777662445566678888876.56677888888888876.56667788888888888888888888888888764.4677764.477777777777888888888888777655 PP

  == domain 3    score: 12.4 bits;  conditional E-value: 2.9e-06
   TIGR02800  197 awSpdgqklaYvsfekkkpeiyvqdlatgkrekv.asfkginvaPafsPDGkklavslskdGnpdiYvmdlaskqltrltkspgidtePsfspDgksivFt 296 
                  ++Spdg  ++  sf+k+     v+ l  g+ ++v +++   + + ++sPDG  l+vs s d ++ ++ + ++ +q++ + +++    ++ fspDg  +v  
  MMETSP1137-20121227|6581_1 1029 NVSPDGLYIVTASFDKTA---CVWRLSDGSLQRVfREHTDAVYSACVSPDG-LLVVSTSADKTARVWDL-ADASQRRVIKNHADLLWSACFSPDGMHVVTA 1124
                  555666555555555443...445555554433314455555566666664.35555555555555433.2333344444445555566666666555422 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1138 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        91  (0.0221843); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.66u 0.14s 00:00:00.80 Elapsed: 00:00:00.78
# Mc/sec: 1925.69
//
Query:       MMETSP1137-20121227|6583_1  [L=204]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (204 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        65  (0.0158459); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.18s 00:00:00.37 Elapsed: 00:00:00.41
# Mc/sec: 656.73
//
Query:       MMETSP1137-20121227|6584_1  [L=55]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        25  (0.00609459); expected 82.0 (0.02)
Passed bias filter:                       25  (0.00609459); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.36
# Mc/sec: 201.65
//
Query:       MMETSP1137-20121227|6585_1  [L=59]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (59 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        47  (0.0114578); expected 82.0 (0.02)
Passed bias filter:                       40  (0.00975134); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.14s 00:00:00.26 Elapsed: 00:00:00.28
# Mc/sec: 268.53
//
Query:       MMETSP1137-20121227|6586_1  [L=869]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.62    5.4  10.5        1.1    4.5   7.3    1.3  1  TIGR00927 2A1904: K+-dependent Na+/Ca+ exchanger


Domain annotation for each model (and alignments):
>> TIGR00927  2A1904: K+-dependent Na+/Ca+ exchanger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   7.3   0.00028       1.1     922     999 ..      35     113 ..      24     124 .. 0.69

  Alignments for each domain:
  == domain 1    score: 4.5 bits;  conditional E-value: 0.00028
   TIGR00927 922 edekdegeedeeeiaddee..vkdetgeqelnaenqgeakedekGvdgeggsdGGdseeeeeeeeeeeeeeeeeeeeeee 999
                 ede+d g++ ++ +++d++  + +e  +++l a   +e k+ e G+   g  d Gd e +++e + e +eeee +eee++
  MMETSP1137-20121227|6586_1  35 EDERDGGSSGKQPVRADKGraSGKERSSHDLDAAGPAE-KQREVGLFLSGFEDCGDGEVDDDEGDGELDEEEEGDEEEDD 113
                 33444444344444444440044455566666665554.78899**************9999999988888888888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (869 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        78  (0.0190151); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.16s 00:00:00.65 Elapsed: 00:00:00.64
# Mc/sec: 1792.16
//
Query:       MMETSP1137-20121227|6587_1  [L=81]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (81 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        65  (0.0158459); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.18s 00:00:00.31 Elapsed: 00:00:00.31
# Mc/sec: 344.87
//
Query:       MMETSP1137-20121227|6588_1  [L=672]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (672 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       172  (0.0419308); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.17s 00:00:00.61 Elapsed: 00:00:00.51
# Mc/sec: 1739.15
//
Query:       MMETSP1137-20121227|6589_1  [L=390]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (390 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       222  (0.0541199); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.16s 00:00:00.47 Elapsed: 00:00:00.44
# Mc/sec: 1169.90
//
Query:       MMETSP1137-20121227|6590_1  [L=424]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.21    8.6  36.3     0.0033   14.5  20.1    1.6  2  TIGR02794 tolA_full: protein TolA


Domain annotation for each model (and alignments):
>> TIGR02794  tolA_full: protein TolA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5  20.1     8e-07    0.0033     161     275 ..      68     186 ..      55     235 .. 0.57
   2 ?   -3.0   0.5      0.17   6.9e+02      81     107 ..     312     338 ..     288     351 .. 0.45

  Alignments for each domain:
  == domain 1    score: 14.5 bits;  conditional E-value: 8e-07
   TIGR02794 161 aEeeakakaaaeakkkaEaeeakkkaeaeak.KakaeaeaKa.kae.eakaKaeae.AkaKAeaeAkaKaeaeakakakaeaerka.a.kqeaeladlaG.laeeknaekqgsgaagkavas 275
                 a++e   +a  ++k +  ae+a+ ka++e+k Ka++e++++  +ae eak Kae    ++   +eA+a ++aea++k+  +    a + k++ +lad a+ +a+++ aek +  ++gk++  
  MMETSP1137-20121227|6590_1  68 AAQETLLRAFTKNKERS-AEDAREKAAKEKKrKAEEEKRRQRlQAEkEAKVKAESSrIEEISPEEAAAIKAAEAAKKQPGDSA--AdSsKSSDALADPAAaAASGTDAEKPEDDGEGKGAIP 186
                 44444444443333333.24777777777766666666554413446777777766644444444444333333322211111..1233456666676644777777888877777776655 PP

  == domain 2    score: -3.0 bits;  conditional E-value: 0.17
   TIGR02794  81 qqaeeakkkqaaeqarqkelekqraaa 107
                 q+ e++  +q + +a +++ e+q +++
  MMETSP1137-20121227|6590_1 312 QTVEKMMFDQRQKAAGLPTSEEQSKQD 338
                 333333333333333333333333332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (424 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       414  (0.100926); expected 82.0 (0.02)
Passed bias filter:                      157  (0.038274); expected 82.0 (0.02)
Passed Vit filter:                        18  (0.0043881); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.20s 00:00:00.60 Elapsed: 00:00:00.40
# Mc/sec: 1399.08
//
Query:       MMETSP1137-20121227|6591_1  [L=257]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (257 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        75  (0.0182838); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.13s 00:00:00.33 Elapsed: 00:00:00.33
# Mc/sec: 1027.92
//
Query:       MMETSP1137-20121227|6593_1  [L=337]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.042    9.3  14.6       0.07    8.6  10.1    1.4  1  TIGR02169 SMC_prok_A: chromosome segregation protein SMC
       0.11   10.6   3.4       0.84    7.8   2.1    2.5  2  TIGR03930 WXG100_ESAT6: WXG100 family type VII secretion target
       0.81    6.1   7.3      0.078    9.5   0.6    1.8  2  TIGR00437 feoB: ferrous iron transport protein B


Domain annotation for each model (and alignments):
>> TIGR02169  SMC_prok_A: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6  10.1   5.1e-05      0.07     306     489 ..     134     312 ..      82     318 .. 0.69

  Alignments for each domain:
  == domain 1    score: 8.6 bits;  conditional E-value: 5.1e-05
   TIGR02169 306 kleraiaekeeeledaeerlakaeaeidklkeeieelereieeekkereklke..elkelkeeleelraeleevdkeaaelreelkelkekleklkeelnelkreldrlleelkrleeelaelkaelerieekiaeleeeleelaeeikkaeqkleqlkedlekaekelrklkeeleklekelsel 489
                 k+++ i+ ++e+++++ + l++ ea ++k k +++++++++e++    ++++e  +l++++   +++  ++e  +   a++ +  ++   ++   + el +++      +e l++l+++ +++ +ele++ + +a+l + + ++++eik +   + ++ +++++a+k+l +++++++k  ++ +++
  MMETSP1137-20121227|6593_1 134 KIREDIRLAREDANRLHD-LQRKEAARNKGKGNAQQIAERQETVDLVFKHIEEceALDKRRYASKNSDTRIELFSGGRAATTDT-MAPVSRVPFGETELPDIE-----TQEGLRQLQQKDQRIDQELEQVAAGVADLRTVALDIRDEIKVQSAMVDEITNKVDNANKHLVNINKKMKKTLENTRSA 312
                 344444444444444433.33445556666666666666666666655555541145555555555555666555555554443.444456666666666666.....78899************************************************************9999876665555 PP

>> TIGR03930  WXG100_ESAT6: WXG100 family type VII secretion target
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       1.3   1.8e+03      69      85 ..      99     115 ..      90     124 .. 0.59
   2 ?    7.8   2.1   0.00061      0.84      16      86 ..     242     314 ..     234     315 .. 0.71

  Alignments for each domain:
  == domain 1    score: -2.9 bits;  conditional E-value: 1.3
   TIGR03930  69 eiseelrqaakkfeqad 85 
                 +i+ ++r++ ++ +++d
  MMETSP1137-20121227|6593_1  99 QIALSVRDIRTQLRERD 115
                 34444555555555544 PP

  == domain 2    score: 7.8 bits;  conditional E-value: 0.00061
   TIGR03930  16 fqktaqelqqelqrlrseidalqst.WeGaAaqafdaef.aewkpaaerlneaLqeiseelrqaakkfeqade 86 
                 +q++ q+++qel+++ + +++l++         + ++++ +e+  ++++ n+ L +i+++++++ ++ ++ad+
  MMETSP1137-20121227|6593_1 242 LQQKDQRIDQELEQVAAGVADLRTVaLDIRDEIKVQSAMvDEITNKVDNANKHLVNINKKMKKTLENTRSADR 314
                 4555555555555555555555544355555556666777999999999999999999999999999999986 PP

>> TIGR00437  feoB: ferrous iron transport protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.0   0.5     0.043        58     169     235 ..     122     187 ..      85     212 .. 0.48
   2 ?    9.5   0.6   5.7e-05     0.078     170     267 ..     237     331 ..     222     336 .. 0.63

  Alignments for each domain:
  == domain 1    score: -0.0 bits;  conditional E-value: 0.043
   TIGR00437 169 lkeaeslaevkeklkelkqklkkglevleglleeraleiekiekelaevvkkesesklsateiadee 235
                    +++++++ +k+   +++l+++ +  +++l+ + ++ +k + +++++++ ++  +l +++i + e
  MMETSP1137-20121227|6593_1 122 GTSGRQTVALSHKIR-EDIRLAREDANRLHDLQRKEAARNKGKGNAQQIAERQETVDLVFKHIEECE 187
                 333333333333222.224444444444555555555555556666666666666666666555443 PP

  == domain 2    score: 9.5 bits;  conditional E-value: 5.7e-05
   TIGR00437 170 keaeslaevkeklkelkqklkkglevleglleeraleiekiekelaevvkkesesklsateiadeekvlveksigtkvldrflglliilsvvflllll 267
                 + +++l++ ++ +++  ++++ g ++l++++ +   ei+  +  + e+++k ++ +++  +i ++ k ++e+++     drf++ +i+l v+  ++ +
  MMETSP1137-20121227|6593_1 237 EGLRQLQQKDQRIDQELEQVAAGVADLRTVALDIRDEIKVQSAMVDEITNKVDNANKHLVNINKKMKKTLENTRS---ADRFIIDFILLVVLMGIIGY 331
                 334444444444444444556666677777777777777776667777777777777777776665555555555...56999999999888777654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (337 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       382  (0.0931253); expected 82.0 (0.02)
Passed bias filter:                      128  (0.0312043); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.38u 0.18s 00:00:00.56 Elapsed: 00:00:00.50
# Mc/sec: 889.61
//
Query:       MMETSP1137-20121227|6594_1  [L=513]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.5e-23   80.7   0.3    3.5e-23   79.5   0.1    1.8  2  TIGR00090 iojap_ybeB: iojap-like ribosome-associated protein


Domain annotation for each model (and alignments):
>> TIGR00090  iojap_ybeB: iojap-like ribosome-associated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.5   0.1   8.6e-27   3.5e-23       4      99 .]     125     220 ..     122     220 .. 0.98
   2 ?   -3.5   0.0      0.65   2.6e+03      66      76 ..     370     380 ..     348     382 .. 0.77

  Alignments for each domain:
  == domain 1    score: 79.5 bits;  conditional E-value: 8.6e-27
   TIGR00090   4 livealedkkaedivvldvrekssiadyfviasgeserqvkaladeveeelkekglkplrvegkeegeWvlvDlgdvvvhifqeeaRefYdLEklw 99 
                  iv+a++ +ka++i +l v +++s + yfv ++g+s+ q++a+++++e+el+e+  +  + +gk  g Wv +D+ dvvv++f+e++R+fY++Ek+w
  MMETSP1137-20121227|6594_1 125 AIVRAADARKAKEICALXVGHLTSATSYFVNMQGSSKAQIQAIVKSIEDELDEQFSRSASRQGKAVGGWVCLDFDDVVVNVFSEKERAFYQIEKFW 220
                 7999******************************************************************************************** PP

  == domain 2    score: -3.5 bits;  conditional E-value: 0.65
   TIGR00090  66 gkeegeWvlvD 76 
                 gk+e++W+l D
  MMETSP1137-20121227|6594_1 370 GKQEEDWALGD 380
                 78899999877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (513 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       175  (0.0426621); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.13s 00:00:00.49 Elapsed: 00:00:00.48
# Mc/sec: 1410.63
//
Query:       MMETSP1137-20121227|6595_1  [L=152]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (152 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        27  (0.00658216); expected 82.0 (0.02)
Passed bias filter:                       25  (0.00609459); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.13s 00:00:00.30 Elapsed: 00:00:00.28
# Mc/sec: 691.80
//
Query:       MMETSP1137-20121227|6596_1  [L=218]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (218 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        98  (0.0238908); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.17s 00:00:00.38 Elapsed: 00:00:00.31
# Mc/sec: 928.18
//
Query:       MMETSP1137-20121227|6597_1  [L=107]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.039   11.6   1.6      0.075   10.7   1.1    1.5  1  TIGR03949 bact_IIb_cerein: class IIb bacteriocin, lactobin A/cerein 7B family


Domain annotation for each model (and alignments):
>> TIGR03949  bact_IIb_cerein: class IIb bacteriocin, lactobin A/cerein 7B family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   1.1   1.8e-05     0.075       8      41 ..      11      42 ..       7      48 .. 0.77

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 1.8e-05
   TIGR03949  8 ELenVnGGvapigvAi.cvgggaaaaagagftaGa 41
                ++ ++ GG+ap++ A      +  a+a+a++++G+
  MMETSP1137-20121227|6597_1 11 DISSILGGIAPAAPAAqT---ATPAPAAAPAAGGF 42
                567999*****8777774...77777777777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (107 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        76  (0.0185275); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.28
# Mc/sec: 504.39
//
Query:       MMETSP1137-20121227|6598_1  [L=494]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00017   19.2   0.0     0.0003   18.4   0.0    1.3  1  TIGR03789 pdsO: proteobacterial sortase system OmpA family protein
    0.00036   18.4   0.0    0.00067   17.6   0.0    1.4  1  TIGR02802 Pal_lipo: peptidoglycan-associated lipoprotein


Domain annotation for each model (and alignments):
>> TIGR03789  pdsO: proteobacterial sortase system OmpA family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.0   1.5e-07    0.0003     141     206 ..     252     317 ..     244     324 .. 0.90

  Alignments for each domain:
  == domain 1    score: 18.4 bits;  conditional E-value: 1.5e-07
   TIGR03789 141 vqFrTGSseiephfqeQldevaellkqspelkldLaGyadrrGdsskNqaLSeqRveeVrsyLikq 206
                 + F+   ++++     ++d+va++l + p+l+l   Gya+         aL + R+  Vr+ L ++
  MMETSP1137-20121227|6598_1 252 IYFKFADHQLDEASLCKVDAVAKMLTKHPKLRLRVHGYAQPNAPDVIGEALAQSRAVTVRNHLLSR 317
                 56777778888888889*********************************************9875 PP

>> TIGR02802  Pal_lipo: peptidoglycan-associated lipoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.0   3.3e-07   0.00067       1      66 [.     251     316 ..     251     321 .. 0.96

  Alignments for each domain:
  == domain 1    score: 17.6 bits;  conditional E-value: 3.3e-07
   TIGR02802   1 svyfdldkselkeeaqavleahakylkknpsvkvlieGhaDerGtrEYNlaLGerRakavkeylva 66 
                 ++yf++ +++l+e +   ++a ak+l+k+p++++ ++G a     +    aL + Ra +v++ l +
  MMETSP1137-20121227|6598_1 251 RIYFKFADHQLDEASLCKVDAVAKMLTKHPKLRLRVHGYAQPNAPDVIGEALAQSRAVTVRNHLLS 316
                 59***********************************************************99875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (494 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       111  (0.02706); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.36u 0.13s 00:00:00.49 Elapsed: 00:00:00.45
# Mc/sec: 1448.95
//
Query:       MMETSP1137-20121227|6599_1  [L=178]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.8e-77  256.8   0.0    7.6e-77  256.7   0.0    1.0  1  TIGR02818 adh_III_F_hyde: S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase
    1.6e-25   87.5   0.0    1.8e-25   87.3   0.0    1.0  1  TIGR03451 mycoS_dep_FDH: mycothiol-dependent formaldehyde dehydrogenase
      2e-21   74.5   0.0    2.2e-21   74.3   0.0    1.0  1  TIGR03989 Rxyl_3153: oxidoreductase, Rxyl_3153 family
      2e-11   41.3   0.0    2.3e-11   41.1   0.0    1.0  1  TIGR00692 tdh: L-threonine 3-dehydrogenase
      1e-10   39.2   0.1    1.2e-10   38.9   0.0    1.1  1  TIGR03366 HpnZ_proposed: putative phosphonate catabolism associated alcohol dehydrogenase
    1.6e-09   35.2   0.0    1.8e-09   35.0   0.0    1.1  1  TIGR03201 dearomat_had: 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase
    0.00052   16.5   0.0    0.00071   16.1   0.0    1.2  1  TIGR02819 fdhA_non_GSH: formaldehyde dehydrogenase, glutathione-independent


Domain annotation for each model (and alignments):
>> TIGR02818  adh_III_F_hyde: S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  256.7   0.0   1.3e-79   7.6e-77     198     366 ..       1     169 [.       1     171 [. 0.99

  Alignments for each domain:
  == domain 1    score: 256.7 bits;  conditional E-value: 1.3e-79
   TIGR02818 198 glsviqgaklakasriiaidineakfelakklgatdlvnpkdydkpiqeviveltdggvdysfecignvnvmraalesahkgwgesiiigvagagqeistrpfqlvtgrvwkgsafggvkgrtelpglveqylkgeiklddfvtetmpledineafdlmhegksirtvi 366
                 gl+vi   kla+asriia+d+ ++k+elak+ gatd+vnpkd++kpiq+viv +t+ gvdysf+c g v+vmraale++h+gwg s++igva+ag+eistrpfqlvtgr wkg+afgg k + e+p lv++y+kg++++d+++t+ +p+++in+ +d++h+g ++r+v+
  MMETSP1137-20121227|6599_1   1 GLAVIEALKLAGASRIIAVDLLPHKLELAKQWGATDVVNPKDHEKPIQQVIVGMTEFGVDYSFDCTGSVEVMRAALECSHRGWGTSVVIGVAAAGKEISTRPFQLVTGRTWKGTAFGGWKSKPEVPMLVDSYMKGKLRIDEYITHVLPFAEINKGLDTLHKGDCLRCVL 169
                 89*********************************************************************************************************************************************************************98 PP

>> TIGR03451  mycoS_dep_FDH: mycothiol-dependent formaldehyde dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.3   0.0   3.1e-28   1.8e-25     189     357 ..       1     170 [.       1     171 [. 0.92

  Alignments for each domain:
  == domain 1    score: 87.3 bits;  conditional E-value: 3.1e-28
   TIGR03451 189 geaaiagaalagakkiiavdiddkklerarelgathtvnsse.edvveaireltggfgadvvidavgrpetykqafyardl.agtvvlvgvptpemklelplldvfsrggalksswygdclperdfpvlvdlylqgrldldkfvserislddveeafekmkagevlrsvvv 357
                 g a+i   +laga++iiavd+  +kle a++ gat++vn ++ e++++++      fg+d   d  g  e  + a+       gt v++gv     ++     ++   g + k + +g    + + p+lvd y++g+l +d+++++ + + ++++ ++++++g+ lr v+ 
  MMETSP1137-20121227|6599_1   1 GLAVIEALKLAGASRIIAVDLLPHKLELAKQWGATDVVNPKDhEKPIQQVIVGMTEFGVDYSFDCTGSVEVMRAALECSHRgWGTSVVIGVAAAGKEISTRPFQLV-TGRTWKGTAFGGWKSKPEVPMLVDSYMKGKLRIDEYITHVLPFAEINKGLDTLHKGDCLRCVLL 170
                 67899999********************************9846899998888888********************98765269*************998766664.5788999******************************************************976 PP

>> TIGR03989  Rxyl_3153: oxidoreductase, Rxyl_3153 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.3   0.0   3.8e-24   2.2e-21     201     370 .]       3     171 ..       1     171 [. 0.85

  Alignments for each domain:
  == domain 1    score: 74.3 bits;  conditional E-value: 3.8e-24
   TIGR03989 201 navqGaavaGarkvvavdpvefkrekalklGathav..asieealelvaeltnGkgadkaiitvgevegelieealklvakg.GrvvvtglakladedvklnlleltllqkelkGalfGeanpradiprllelykaGklkldelvtktykldeinegyqdlleGknirGvivy 370
                 + +   ++aGa++++avd +++k+e a++ Gat +v  ++ e+++++v    +  g d +   +g+v  e++  al+   +g G+ vv+g+a+   ++++  +++l+ + ++ kG+ fG+ +++ ++p l++ y +Gkl++de +t+   + ein+g + l++G  +r v+ +
  MMETSP1137-20121227|6599_1   3 AVIEALKLAGASRIIAVDLLPHKLELAKQWGATDVVnpKDHEKPIQQVIVGMTEFGVDYSFDCTGSV--EVMRAALECSHRGwGTSVVIGVAAAG-KEISTRPFQLV-TGRTWKGTAFGGWKSKPEVPMLVDSYMKGKLRIDEYITHVLPFAEINKGLDTLHKGDCLRCVLLF 171
                 56667789**************************995556666776665555556778888888877..566777777666559*******9865.57888999986.6789********************************************************99876 PP

>> TIGR00692  tdh: L-threonine 3-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.1   0.0   3.9e-14   2.3e-11     175     339 ..       2     170 ..       1     171 [. 0.84

  Alignments for each domain:
  == domain 1    score: 41.1 bits;  conditional E-value: 3.9e-14
   TIGR00692 175 llavavakaaGasqvivsdkneyrlelakkvGatrvvnvak.edlvkvvaeltsge.GvdvvlelsGapkaleqgldavang.GrvallglpeskvtidltnkvifkgltikGitGrklfetwykvsrliqs...nkldlapiithkfkldefekgfelmrsGksGkvili 339
                 l  +   k aGas++i++d   ++lelak+ Gat vvn+++ e++++ v  ++++e Gvd   + +G+ + ++ +l+   +g G   ++g+  +   i      +  g t kG      +++  +v  l++s   +kl ++  ith  ++ e +kg++ +  G + + +l+
  MMETSP1137-20121227|6599_1   2 LAVIEALKLAGASRIIAVDLLPHKLELAKQWGATDVVNPKDhEKPIQQVI-VGMTEfGVDYSFDCTGSVEVMRAALECSHRGwGTSVVIGVAAAGKEISTRPFQLVTGRTWKGTA-FGGWKSKPEVPMLVDSymkGKLRIDEYITHVLPFAEINKGLDTLHKGDCLRCVLL 170
                 555667799*****************************986245555554.566655*********************99985777789***99999999988888888888854.3457777789999998555689***************************998875 PP

>> TIGR03366  HpnZ_proposed: putative phosphonate catabolism associated alcohol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.9   0.0   2.1e-13   1.2e-10     168     270 ..       1     107 [.       1     115 [. 0.88

  Alignments for each domain:
  == domain 1    score: 38.9 bits;  conditional E-value: 2.1e-13
   TIGR03366 168 GLtaaaaaeerGasrviavDpsaeRrelaaafGaealaeeeelaevrkeatdg...ravdvalelsGasaaveaalesldvg.GvvvlvGsvaPadevaldpeqvvR 270
                 GL+ + a++ +Gasr+iavD  +++ ela++ Ga+++++++ +++  +++  g    +vd  ++ +G+ + ++aale  + g G+ v++G  a ++e++ +p q+v 
  MMETSP1137-20121227|6599_1   1 GLAVIEALKLAGASRIIAVDLLPHKLELAKQWGATDVVNPKDHEKPIQQVIVGmteFGVDYSFDCTGSVEVMRAALECSHRGwGTSVVIGVAAAGKEISTRPFQLVT 107
                 889999999******************************99888777665544111689******************988877*********************995 PP

>> TIGR03201  dearomat_had: 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.0   0.0   3.1e-12   1.8e-09     188     347 ..      10     170 ..       1     172 [. 0.82

  Alignments for each domain:
  == domain 1    score: 35.0 bits;  conditional E-value: 3.1e-12
   TIGR03201 188 alGa.avvaidideeklemvkkaGadlilnpkdisarevkkaikafakarGlrstewkilevsGskpGqesaldllsfg.atlvvvGytmdkve.....vrlsklmafdaralGnwGcppdlyaaaldlvldgkidlasfver.rpldqieevfaaahdhklkrrail 347
                   Ga  ++a+d+ + kle+ k+ Ga  ++npkd   + +++ i +++ + G+       ++++Gs+   ++al+    g +t vv+G + +  e     ++l    +++  a+G w   p+  +   d  ++gk+ +++++ +  p+ +i++ ++  h++   r ++l
  MMETSP1137-20121227|6599_1  10 LAGAsRIIAVDLLPHKLELAKQWGATDVVNPKDH-EKPIQQVIVGMT-EFGVDY----SFDCTGSVEVMRAALECSHRGwGTSVVIGVAAAGKEistrpFQLVTGRTWKGTAFGGWKSKPEV-PMLVDSYMKGKLRIDEYITHvLPFAEINKGLDTLHKGDCLRCVLL 170
                 4588679**************************7.689999999876.567664....59*************9877664577788887665442222256666678999**********96.8999*************97527***************99988876 PP

>> TIGR02819  fdhA_non_GSH: formaldehyde dehydrogenase, glutathione-independent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0   1.2e-06   0.00071     201     266 ..       1      67 [.       1      89 [. 0.88

  Alignments for each domain:
  == domain 1    score: 16.1 bits;  conditional E-value: 1.2e-06
   TIGR02819 201 glaaaasarllgaavvivgdlneerlaqarsfgc.etvdlkkdatlaeqieqilgepevdaavdavg 266
                 gla+ ++ +l ga+ +i  dl +++l  a+  g  ++v+ k +++  +q+   + e  vd + d+ g
  MMETSP1137-20121227|6599_1   1 GLAVIEALKLAGASRIIAVDLLPHKLELAKQWGAtDVVNPKDHEKPIQQVIVGMTEFGVDYSFDCTG 67 
                 89999***************************96378888888888888877777888*******98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (178 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        83  (0.020234); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.24u 0.19s 00:00:00.43 Elapsed: 00:00:00.38
# Mc/sec: 618.26
//
Query:       MMETSP1137-20121227|6600_1  [L=98]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (98 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        61  (0.0148708); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.14s 00:00:00.28 Elapsed: 00:00:00.31
# Mc/sec: 417.26
//
Query:       MMETSP1137-20121227|6601_1  [L=331]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (331 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        81  (0.0197465); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.16s 00:00:00.41 Elapsed: 00:00:00.63
# Mc/sec: 693.47
//
Query:       MMETSP1137-20121227|6602_1  [L=384]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00029   16.5  15.1    0.00038   16.1  10.4    1.1  1  TIGR02168 SMC_prok_B: chromosome segregation protein SMC
     0.0007   15.2   9.8    0.00079   15.0   6.8    1.1  1  TIGR02169 SMC_prok_A: chromosome segregation protein SMC
      0.006   14.0   0.4     0.0083   13.5   0.2    1.2  1  TIGR00345 arsA: arsenite-activated ATPase ArsA
  ------ inclusion threshold ------
       0.32    7.2  11.1       0.44    6.8   7.7    1.2  1  TIGR03319 YmdA_YtgF: conserved hypothetical protein YmdA/YtgF
       0.41    7.3   9.0       0.54    7.0   6.2    1.2  1  TIGR01843 type_I_hlyD: type I secretion membrane fusion protein, HlyD family


Domain annotation for each model (and alignments):
>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1  10.4   4.6e-07   0.00038     325     475 ..      87     237 ..      50     260 .. 0.71

  Alignments for each domain:
  == domain 1    score: 16.1 bits;  conditional E-value: 4.6e-07
   TIGR02168 325 leeleskkeeleeelaeleeeleelkeelesleaeleeaeaeleelesrleeleeeleelrsevaeleeqlaslnaelerleaeleqleerrerlkqeieelekkleeaeaelkelqeeleeleeeleeleeelerleealeeleeeleea 475
                 +e++ +  e + +++++++++ +  ++ ++ +++++++  +  +  e  +++ +++ ee++++++ ++  ++s+++e erl   l +l+ ++e l +++++le+kl++  a+++e ++ + e+ee +e l+++ e l+++l+++++  ++ 
  MMETSP1137-20121227|6602_1  87 VEKASKAGESAGKKADSSSTKNAAKQAACAGASSSADKGDDLDAVWEMLSHATRQASEEEKAALQHVKALVQSTQKEKERLALALDKLSVEKEDLIHRKRQLEQKLKDWAAKFSEREAAIGEKEEVIEALKSSIELLRTELRNISQLSKAP 237
                 3344444455555566666666666778888888888877777778888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888887766654 PP

>> TIGR02169  SMC_prok_A: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   6.8   9.6e-07   0.00079     702     790 ..     140     228 ..      54     283 .. 0.50

  Alignments for each domain:
  == domain 1    score: 15.0 bits;  conditional E-value: 9.6e-07
   TIGR02169 702 ekrldelssklsdaekkieeiekeleqleeeeeklkerleeleeklseleeeleekkeelkeleaeieeleeklaklkealedleaels 790
                 +++++e +++l++ ++ ++  +ke e+l+   +kl+ + e+l ++ ++le++l++  ++  e ea i e+ee +++lk  +e l  el+
  MMETSP1137-20121227|6602_1 140 RQASEEEKAALQHVKALVQSTQKEKERLALALDKLSVEKEDLIHRKRQLEQKLKDWAAKFSEREAAIGEKEEVIEALKSSIELLRTELR 228
                 11122222222222223333333333333333333333333333333333333333333333333333333333333333333322222 PP

>> TIGR00345  arsA: arsenite-activated ATPase ArsA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   0.2     1e-05    0.0083     170     292 ..     113     235 ..      76     238 .. 0.81

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 1e-05
   TIGR00345 170 l..mgkeeeeevlekleelkeqiealrevlsDpertsfvlVvipeklslkEseRavkeLkkygikvdavivNqvlpeeaqdeflkarkelqkkylkeieekfedlevaevpllkeevvGleaLek 292
                    +g++ + +  ++l+++ e ++++ ++ s++e+++++ V  + +++ kE eR+  +L k +++ + +i  +   e++  + +++  e++    +  +e+  +  + ++ ll++e++ +++L+k
  MMETSP1137-20121227|6602_1 113 AacAGASSSADKGDDLDAVWEMLSHATRQASEEEKAALQHVKALVQSTQKEKERLALALDKLSVEKEDLIHRKRQLEQKLKDWAAKFSEREAAIGE--KEEVIEALKSSIELLRTELRNISQLSK 235
                 234677778888899999****************************************************99888888777777766666655443..455566667889999999999988876 PP

>> TIGR03319  YmdA_YtgF: conserved hypothetical protein YmdA/YtgF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   7.7   0.00054      0.44      35     143 ..     132     232 ..      99     251 .. 0.62

  Alignments for each domain:
  == domain 1    score: 6.8 bits;  conditional E-value: 0.00054
   TIGR03319  35 kkiieeakkeaeakkkealleakeevkklreelekelkerrkelqklekrlkqkeekldrkk....eklekkeeelekkekeleekekeleekeeeleellkeqkeeLekisg 143
                  +++++a+++a++++k al ++k  v+++++e e+ +    ++l+ +++ l +++ +l++k     +k++++e ++ +ke+ +e+ ++++e  ++el+++           s+
  MMETSP1137-20121227|6602_1 132 WEMLSHATRQASEEEKAALQHVKALVQSTQKEKERLA-LALDKLSVEKEDLIHRKRQLEQKLkdwaAKFSEREAAIGEKEEVIEALKSSIELLRTELRNI-----------SQ 232
                 4678888999999999999888888888887777643.34444555555555555555554400004444455555555555555555544444444443...........33 PP

>> TIGR01843  type_I_hlyD: type I secretion membrane fusion protein, HlyD family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   6.2   0.00066      0.54     150     245 ..     137     240 ..      53     259 .. 0.53

  Alignments for each domain:
  == domain 1    score: 7.0 bits;  conditional E-value: 0.00066
   TIGR01843 150 aqikqleaeleglqaqlqalrqqleliseele.alrkL..kekglvsrlelLele.....reraelqgelaeleaeleklkaeldeleeklqeleqkfreevse 245
                 +  +q ++e + + + ++al q+++  +e+l  al+kL  +++ l+ r + Le++      +  e +++++e+e  +e+lk+ ++ l+ +l+++ q  ++ +++
  MMETSP1137-20121227|6602_1 137 HATRQASEEEKAALQHVKALVQSTQKEKERLAlALDKLsvEKEDLIHRKRQLEQKlkdwaAKFSEREAAIGEKEEVIEALKSSIELLRTELRNISQLSKAPWMD 240
                 33333333333333333333333333333332111222112333333333333321111134445555555555555555555555555555555555554444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (384 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       353  (0.0860556); expected 82.0 (0.02)
Passed bias filter:                      143  (0.034861); expected 82.0 (0.02)
Passed Vit filter:                        22  (0.00536324); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.39u 0.20s 00:00:00.59 Elapsed: 00:00:00.77
# Mc/sec: 658.23
//
Query:       MMETSP1137-20121227|6603_1  [L=232]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (232 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       150  (0.0365675); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.14s 00:00:00.34 Elapsed: 00:00:00.33
# Mc/sec: 927.92
//
Query:       MMETSP1137-20121227|6604_1  [L=363]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (363 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        94  (0.0229157); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.15s 00:00:00.43 Elapsed: 00:00:00.43
# Mc/sec: 1114.23
//
Query:       MMETSP1137-20121227|6605_1  [L=413]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (413 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       187  (0.0455875); expected 82.0 (0.02)
Passed bias filter:                      113  (0.0275475); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.13s 00:00:00.44 Elapsed: 00:00:00.45
# Mc/sec: 1211.37
//
Query:       MMETSP1137-20121227|6606_1  [L=726]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (726 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        54  (0.0131643); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.14s 00:00:00.56 Elapsed: 00:00:00.44
# Mc/sec: 2177.82
//
Query:       MMETSP1137-20121227|6607_1  [L=339]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.14    9.9   4.7        6.2    4.5   4.5    2.0  2  TIGR03499 FlhF: flagellar biosynthesis protein FlhF
          5    3.2   9.2        6.2    2.9   6.4    1.1  1  TIGR02442 Cob-chelat-sub: cobaltochelatase subunit


Domain annotation for each model (and alignments):
>> TIGR03499  FlhF: flagellar biosynthesis protein FlhF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.0     0.023        47      95     146 ..     102     165 ..      47     183 .. 0.57
   2 ?    4.5   4.5     0.003       6.2      59     107 ..     215     263 ..     193     328 .. 0.59

  Alignments for each domain:
  == domain 1    score: 1.6 bits;  conditional E-value: 0.023
   TIGR03499  95 aaeaaqeaekkleeae....eelrkelkalkellekqlselal........eeedperakllkk 146
                 + +++ ++++++++++    + +++el ++ +ll++++ +l +        ++ +++ +    +
  MMETSP1137-20121227|6607_1 102 EPPPEPAQQEHNNKKSsdlpDGVSAELVEVYKLLKDIVPRLPRdddgcldeHRMHSVLEAHGLQ 165
                 2222222222222222345699999999999999998888877766564443334444444444 PP

  == domain 2    score: 4.5 bits;  conditional E-value: 0.003
   TIGR03499  59 aaseeeeakkaleeaepkklskaeekeekekeaeekaaeaaqeaekkle 107
                 + ++ ++++k+    e+++++++++++e+e++++ +++ +aq + ++ +
  MMETSP1137-20121227|6607_1 215 QPAQHRASQKEILYLEQQQQQQQQQQREREQQQQGQQHGQAQVQWQQHS 263
                 2222222222222222222222222233333333333333333333333 PP

>> TIGR02442  Cob-chelat-sub: cobaltochelatase subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   6.4     0.003       6.2     327     378 ..     217     268 ..     193     332 .. 0.45

  Alignments for each domain:
  == domain 1    score: 2.9 bits;  conditional E-value: 0.003
   TIGR02442 327 eekkeeak....pdeekedeseekekeeskkqeeeepgkddekeedekeeaeeeae 378
                  ++ +++k      e+++++++++++e+++   +++++++ +++ + +++ e++ +
  MMETSP1137-20121227|6607_1 217 AQHRASQKeilyL-EQQQQQQQQQQREREQ---QQQGQQHGQAQVQWQQHSEQRGS 268
                 2221111112211.1111111111111111...11222222222222222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (339 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       334  (0.0814237); expected 82.0 (0.02)
Passed bias filter:                      157  (0.038274); expected 82.0 (0.02)
Passed Vit filter:                        20  (0.00487567); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.33u 0.13s 00:00:00.46 Elapsed: 00:00:00.49
# Mc/sec: 913.15
//
Query:       MMETSP1137-20121227|6608_1  [L=722]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (722 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       122  (0.0297416); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.27s 00:00:00.65 Elapsed: 00:00:01.21
# Mc/sec: 787.57
//
Query:       MMETSP1137-20121227|6609_1  [L=482]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (482 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       680  (0.165773); expected 82.0 (0.02)
Passed bias filter:                      202  (0.0492443); expected 82.0 (0.02)
Passed Vit filter:                        41  (0.00999512); expected 4.1 (0.001)
Passed Fwd filter:                        11  (0.00268162); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.61u 0.34s 00:00:00.95 Elapsed: 00:00:00.60
# Mc/sec: 1060.31
//
Query:       MMETSP1137-20121227|6610_1  [L=571]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (571 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        44  (0.0107265); expected 82.0 (0.02)
Passed bias filter:                       37  (0.00901999); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.16s 00:00:00.49 Elapsed: 00:00:00.42
# Mc/sec: 1794.42
//
Query:       MMETSP1137-20121227|6611_1  [L=189]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.5e-15   52.6   0.1    1.1e-14   52.0   0.1    1.3  1  TIGR01215 minE: cell division topological specificity factor MinE


Domain annotation for each model (and alignments):
>> TIGR01215  minE: cell division topological specificity factor MinE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.0   0.1   2.7e-18   1.1e-14      10      75 ..      85     150 ..      70     154 .. 0.91

  Alignments for each domain:
  == domain 1    score: 52.0 bits;  conditional E-value: 2.7e-18
   TIGR01215  10 rkknsaevakdRLklilaedRaelapeyleelrkeileViskYveidneevevslekkgdvsvLel 75 
                 +  +s + a  RLk++la+dR+++++  l+++r+ei +V++kYv+i++e +++++ ++++ + L +
  MMETSP1137-20121227|6611_1  85 KTDKSRKLALSRLKIVLAHDRSGIDDATLNTIRQEIKAVVAKYVDIQEEGINFDIMNDEKLTLLTA 150
                 4578999************************************************99999998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (189 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       101  (0.0246221); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.22u 0.16s 00:00:00.38 Elapsed: 00:00:00.33
# Mc/sec: 755.94
//
Query:       MMETSP1137-20121227|6612_1  [L=299]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (299 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       129  (0.0314481); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.13s 00:00:00.37 Elapsed: 00:00:00.43
# Mc/sec: 917.78
//
Query:       MMETSP1137-20121227|6613_1  [L=145]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (145 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       112  (0.0273038); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.16s 00:00:00.33 Elapsed: 00:00:00.34
# Mc/sec: 562.89
//
Query:       MMETSP1137-20121227|6614_1  [L=281]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (281 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       133  (0.0324232); expected 82.0 (0.02)
Passed bias filter:                       97  (0.023647); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.16s 00:00:00.40 Elapsed: 00:00:00.36
# Mc/sec: 1030.25
//
Query:       MMETSP1137-20121227|6615_1  [L=887]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (887 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       119  (0.0290102); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.56u 0.16s 00:00:00.72 Elapsed: 00:00:00.56
# Mc/sec: 2053.94
//
Query:       MMETSP1137-20121227|6616_1  [L=198]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0026   14.4   0.4     0.0033   14.1   0.3    1.1  1  TIGR03405 Phn_Fe-ADH: phosphonate metabolism-associated iron-containing alcohol dehydrogenase


Domain annotation for each model (and alignments):
>> TIGR03405  Phn_Fe-ADH: phosphonate metabolism-associated iron-containing alcohol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.3     8e-07    0.0033     128     197 ..     110     177 ..      86     189 .. 0.86

  Alignments for each domain:
  == domain 1    score: 14.1 bits;  conditional E-value: 8e-07
   TIGR03405 128 plvaiPttaGtGsevtpwatvWdaekskkyslaldatyPeaaivdaelmlslPrettlstgldalshale 197
                  +   Ptt G G    ++a  Wd   ++k s + +++ P  a   a+  +s P    ls  l alshal+
  MMETSP1137-20121227|6616_1 110 DIAFKPTTDGWGY-TKQYASGWDRIFANKRSEKAQDASPAPAPA-AASASSKPSSLSLSIKLAALSHALQ 177
                 555569***9996.579**********************99876.5568899****************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (198 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        88  (0.0214529); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.22u 0.16s 00:00:00.38 Elapsed: 00:00:00.43
# Mc/sec: 607.76
//
Query:       MMETSP1137-20121227|6617_1  [L=477]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   1.2e-101  338.3   0.0   1.4e-101  338.0   0.0    1.0  1  TIGR00131 gal_kin: galactokinase
    2.2e-23   81.0   0.0    4.6e-21   73.4   0.0    2.1  1  TIGR00549 mevalon_kin: mevalonate kinase
    0.00066   16.0   0.0    0.00099   15.4   0.0    1.1  1  TIGR03194 4hydrxCoA_A: 4-hydroxybenzoyl-CoA reductase, alpha subunit
     0.0058   13.3   0.0     0.0099   12.6   0.0    1.4  1  TIGR00191 thrB: homoserine kinase
     0.0087   13.3   0.0      0.013   12.7   0.0    1.3  1  TIGR01920 Shik_kin_archae: shikimate kinase


Domain annotation for each model (and alignments):
>> TIGR00131  gal_kin: galactokinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  338.0   0.0  1.8e-104  1.4e-101      11     368 ..       2     356 ..       1     367 [. 0.94

  Alignments for each domain:
  == domain 1    score: 338.0 bits;  conditional E-value: 1.8e-104
   TIGR00131  11 aykekpdlvvraPGRvnliGehiDYndgsvlPlaidvdtlvavkerddknvsitlanadn.klaerkldlpldksevsdWanYvkgvlkvlqeRfnsvplGldivisgdvPtgaGLsssaalevavaavlknlgkleldskeillriqkveehfvGvncGgmDqlasvlGeedhallvefr.kLkatpvklpqleialviantnvksnlapseYnlRrqeveeaakvlakk..sekgaLrDvkeeefaryearltkllqlvekqRakhvvsenlRvlkavkllkdedlkelGkLmnesqasldddyeitvpeidelvesialvnGsiGsRltGaGfGGCtvalvpnenvekvrkalaekYek 368
                  ++++p+lvv aPGR nliGeh+DYn+g+v+P  i   t++a++ +   + ++t+an  +  ++e+  d+ l+   v+d++nY++gv+++  +  +    G++  + ++vP g+GLsssa++eva++++++ l++l+++ +e++lr qk e  f    cG+mDq++s++G+  hall+++r    ++ v+++  ++alvian+nvk++l +seY  R+ +++ea  ++++   ++   LrD + e+ a     ++ ++++v+  Ra+hv+se++R+l+a ++lk  d +++G+Lm es+ sl+ddye++ +e+d+lve++  v+G++GsR+tG+GfGGCtv+l+++  v+++ ka+a +Y+k
  MMETSP1137-20121227|6617_1   2 SFNAEPTLVVSAPGRCNLIGEHTDYNEGFVMPFCIARTTVIAARRLPGSRCRVTSANEGKgIVHEFVGDATLKP--VDDYTNYIRGVVYQYLKDLPGGVCGFEAAVLSNVPLGGGLSSSASVEVAIGTMIEGLYDLTVTPTEKALRCQKCEHDFCDTPCGIMDQFISACGKSGHALLIDCRkPYPTEHVPIDDPDLALVIANSNVKHKLSGSEYPDRVRQCKEACAAMRSAghADVRFLRDATLEQLA----SAKGIDPVVAA-RARHVISEDQRTLQAKEALKARDYRRVGALMVESHRSLRDDYEVSTVELDTLVEIAMTVEGVFGSRMTGGGFGGCTVTLLKKSSVPALLKAIAAEYPK 356
                 6899*****************************************************99834566666776655..46************9999999999*********************************************************************************779999**************************************99998744666677777777776....9999******9.************************************************************************************************98 PP

>> TIGR00549  mevalon_kin: mevalonate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.4   0.0   5.6e-24   4.6e-21       1     276 []      13     337 ..      13     337 .. 0.76

  Alignments for each domain:
  == domain 1    score: 73.4 bits;  conditional E-value: 5.6e-24
   TIGR00549   1 apgKviLfGEHaVVYgepAiaaaiealttvtvie..........eskeislieselgrkslakvsqelskllesyiaavlskleekkeaa...lkveieseipigaGLGSSAavavaliaalaalfgselskeelaklaneaEkivhGkpSgi.Dtavvt...yggvllfekdeg..eekllesldalslviadtgvsr..sTkelVakVrellekfpeviksileaigelvkeakaaledkd...............................veqlgelmninqglLk.slgvShpkleqlvelark.agalgaKlTGaGgGGcvial 276
                 apg   L+GEH    +  ++ + i ++t+++ +           ++++  ++++ +g+ +l+ v + ++     yi  v++++ +  +     ++  + s++p g GL+SSA+v va+ + +  l +  ++  e a   ++ E+ +  +p gi D+++++   +g++ll++ +++  +e++ +++++l lvia+++v++  s +e   +Vr+ +e+ +++  +    +  l +++ + l++ +                               ++++g lm + +  L+ +  vS+ +l++lve+a   +g++g+ +TG+G GGc+++l
  MMETSP1137-20121227|6617_1  13 APGRCNLIGEHTDYNEGFVMPFCIARTTVIAARRlpgsrcrvtsANEGKGIVHEFVGDATLKPVDDYTN-----YIRGVVYQYLKDLPGGvcgFEAAVLSNVPLGGGLSSSASVEVAIGTMIEGLYDLTVTPTEKALRCQKCEHDFCDTPCGImDQFISAcgkSGHALLIDCRKPypTEHVPIDDPDLALVIANSNVKHklSGSEYPDRVRQCKEACAAMRSAGHADVRFLRDATLEQLASAKgidpvvaararhvisedqrtlqakealkardYRRVGALMVESHRSLRdDYEVSTVELDTLVEIAMTvEGVFGSRMTGGGFGGCTVTL 337
                 799999*****9877777788888888888888855555554432222233455555555555555554.....55555554444444434559********************************************************9955999986222567888887766678888899999********9987336789999999999998777667777777777777777755555556666666666666667777777777888*************996369************986538*****************97 PP

>> TIGR03194  4hydrxCoA_A: 4-hydroxybenzoyl-CoA reductase, alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   1.2e-06   0.00099     332     388 ..     216     273 ..     206     282 .. 0.88

  Alignments for each domain:
  == domain 1    score: 15.4 bits;  conditional E-value: 1.2e-06
   TIGR03194 332 rvytnlPpcGamrGhGavdvryafeslldevaaelGldal.avrrrnllkaptvtlnd 388
                 rv     +c amr  G +dvr+  ++ l+++a   G+d++ a r r +   +++tl++
  MMETSP1137-20121227|6617_1 216 RVRQCKEACAAMRSAGHADVRFLRDATLEQLASAKGIDPVvAARARHVISEDQRTLQA 273
                 56666789******************************96378999999999999976 PP

>> TIGR00191  thrB: homoserine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.6   0.0   1.2e-05    0.0099      55     124 ..      75     144 ..      54     219 .. 0.80

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 1.2e-05
   TIGR00191  55 pkesdkNliyqvakkvlkklgkrvkpvkltvekeiplgrGLGSSaaaivaaviaanelaglklskeelld 124
                 p +   N i  v+++ lk+l   v +++  v +++plg GL SSa+  va  ++++ l +l ++ +e+  
  MMETSP1137-20121227|6617_1  75 PVDDYTNYIRGVVYQYLKDLPGGVCGFEAAVLSNVPLGGGLSSSASVEVAIGTMIEGLYDLTVTPTEKAL 144
                 556667899999999999999999********************99999877777777777776666555 PP

>> TIGR01920  Shik_kin_archae: shikimate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.7   0.0   1.6e-05     0.013      59     109 ..      90     140 ..      71     228 .. 0.81

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 1.6e-05
   TIGR01920  59 alieklgikegleveveseiPagsGLksSsAlvnAlvlavlkakgeeiddi 109
                 +l++  g + g e+ v s++P g GL+sS+ + +A+   +  +++  + + 
  MMETSP1137-20121227|6617_1  90 YLKDLPGGVCGFEAAVLSNVPLGGGLSSSASVEVAIGTMIEGLYDLTVTPT 140
                 4555556666899********************999877777777666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (477 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       110  (0.0268162); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                        18  (0.0043881); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.38u 0.15s 00:00:00.53 Elapsed: 00:00:00.41
# Mc/sec: 1535.58
//
Query:       MMETSP1137-20121227|6618_1  [L=251]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (251 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       276  (0.0672843); expected 82.0 (0.02)
Passed bias filter:                      197  (0.0480254); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.18s 00:00:00.44 Elapsed: 00:00:00.41
# Mc/sec: 808.03
//
Query:       MMETSP1137-20121227|6619_1  [L=388]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-73  244.4   0.0    2.1e-73  243.9   0.0    1.2  1  TIGR02356 adenyl_thiF: thiazole biosynthesis adenylyltransferase ThiF
    1.7e-67  225.2   0.0    2.5e-67  224.6   0.0    1.2  1  TIGR02355 moeB: molybdopterin synthase sulfurylase MoeB
    7.4e-23   79.3   0.1    1.3e-22   78.5   0.1    1.3  1  TIGR02354 thiF_fam2: thiamine biosynthesis protein ThiF
    2.2e-17   59.9   0.0    2.6e-17   59.7   0.0    1.1  1  TIGR01408 Ube1: ubiquitin-activating enzyme E1
    5.1e-08   30.4   0.2      2e-07   28.4   0.1    1.9  2  TIGR03736 PRTRC_ThiF: PRTRC system ThiF family protein
      8e-05   19.1   0.0    0.00011   18.6   0.0    1.1  1  TIGR01381 E1_like_apg7: E1-like protein-activating enzyme Gsa7p/Apg7p
  ------ inclusion threshold ------
      0.023   11.9   0.0      0.049   10.9   0.0    1.5  1  TIGR03167 tRNA_sel_U_synt: tRNA 2-selenouridine synthase


Domain annotation for each model (and alignments):
>> TIGR02356  adenyl_thiF: thiazole biosynthesis adenylyltransferase ThiF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  243.9   0.0   3.6e-76   2.1e-73       1     202 [.      18     219 ..      18     220 .. 0.99

  Alignments for each domain:
  == domain 1    score: 243.9 bits;  conditional E-value: 3.6e-76
   TIGR02356   1 RyarqlllkeigeegqqklleskvliiGaGgLgsavaeylaaaGvgtiaivDdDevdlsNlqrqilfaeedvkrpKveaaaerlkelnseirvealkeevtaenleelieqvdlvlDctDnfktrylindaceaagkPlisaavvgfeGqvavldsskgpclrcllpeapaadtaksCaeaGvigpvvgvigslqaleAlkl 202
                 Ry+r+lll+++g+ gq kl+++kv+ +G GgLgs+++ ylaaaGvgti +vDdD vd sNlqrqi+++++ v+++Kv++a +r++++n+ i+v+++ke++t++n    ++++d+v+D+ Dnf+tryl+ndac++ gkPl+++av +feGqv v++++ gp +r+++p+ p  + ++sCae G++g + gv+g++qa+eA+k+
  MMETSP1137-20121227|6619_1  18 RYSRHLLLEDVGVRGQLKLKDAKVMCVGSGGLGSPALMYLAAAGVGTIGLVDDDVVDESNLQRQIVHSTAAVGTSKVDSATQRMRDINPLITVKSYKEKLTSDNALRILADYDVVIDGCDNFPTRYLVNDACVILGKPLVYGAVQKFEGQVSVFNYKGGPNYRDMFPNPPPPGAVPSCAEGGILGVLPGVVGTMQATEAVKI 219
                 9*******************************************************************************************************************************************************************************************************97 PP

>> TIGR02355  moeB: molybdopterin synthase sulfurylase MoeB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  224.6   0.0   4.3e-70   2.5e-67       1     234 [.      15     249 ..      15     254 .. 0.95

  Alignments for each domain:
  == domain 1    score: 224.6 bits;  conditional E-value: 4.3e-70
   TIGR02355   1 ellrynrqiilkaldfdGqeklkaskvlivGlGGlGcaasqylaaaGvGrltlvdfdtvelsnlqrqvlhsdanigqpkvesakdaleelnphieietinaklddeelaaliakhdvvvdctdnvevrnqlnrqcfaakvplvsgaairleGqvsvftyqaeepcyrclsklf..genalscveaGvlapvvGvvGslqaleaikvllkiGkelaGkllildalsleirelkllkn 234
                 e+ ry+r + l+++ + Gq klk++kv+ vG GGlG  a  ylaaaGvG + lvd+d+v+ snlqrq++hs a +g+ kv+sa ++++++np i +++ ++kl +++   ++a++dvv+d +dn  +r  +n  c    +plv ga  ++eGqvsvf+y+   p yr++         + sc e G+l  + GvvG++qa ea+k++l+ G++l+G+ll++da+++++re+k++ +
  MMETSP1137-20121227|6619_1  15 EVRRYSRHLLLEDVGVRGQLKLKDAKVMCVGSGGLGSPALMYLAAAGVGTIGLVDDDVVDESNLQRQIVHSTAAVGTSKVDSATQRMRDINPLITVKSYKEKLTSDNALRILADYDVVIDGCDNFPTRYLVNDACVILGKPLVYGAVQKFEGQVSVFNYKG-GPNYRDMFPNPppPGAVPSCAEGGILGVLPGVVGTMQATEAVKIVLGRGETLSGRLLLYDAMTMRFREVKIVAR 249
                 678************************************************************************************************************************************************************85.699998755431134567****************************************************9865 PP

>> TIGR02354  thiF_fam2: thiamine biosynthesis protein ThiF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.5   0.1   2.2e-25   1.3e-22      18     130 ..      35     148 ..      23     154 .. 0.93

  Alignments for each domain:
  == domain 1    score: 78.5 bits;  conditional E-value: 2.2e-25
   TIGR02354  18 klkkasvaiaGlGGlGsnvainlaraGigklilvdfdvvepsnlnrqq.ykvsdvGkkktealkeqiseinPyveieiidekideenleklfkdadivieafdnaeakallvna 130
                 klk+a+v  +G GGlGs + + la aG+g + lvd dvv+ snl+rq  +    vG+ k  +  +++++inP + ++ ++ek++ +n  ++++d d+vi+  dn  ++ l+ +a
  MMETSP1137-20121227|6619_1  35 KLKDAKVMCVGSGGLGSPALMYLAAAGVGTIGLVDDDVVDESNLQRQIvHSTAAVGTSKVDSATQRMRDINPLITVKSYKEKLTSDNALRILADYDVVIDGCDNFPTRYLVNDA 148
                 89*********************************************7256789**************************************************9998887665 PP

>> TIGR01408  Ube1: ubiquitin-activating enzyme E1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.7   0.0   4.4e-20   2.6e-17     407     548 ..      26     158 ..       1     195 [. 0.84

  Alignments for each domain:
  == domain 1    score: 59.7 bits;  conditional E-value: 4.4e-20
   TIGR01408 407 avfGaklqkkledlkvflvGaGaiGcellknlallGvatgkkGkitvtdddlieksnlnrqflfrprdigkaksevaasavavinprlkieayqnrvgpetetifddefyeklsvvvnaldnvearlyvdsrclffekPlle 548
                   +G + q kl+d+kv+ vG+G +G   l  la  Gv     G+i + ddd+++ snl+rq +     +g  k   a++ +  inp +++++y+++++++           + +vv++  dn  +r  v+  c++  kPl+ 
  MMETSP1137-20121227|6619_1  26 EDVGVRGQLKLKDAKVMCVGSGGLGSPALMYLAAAGV-----GTIGLVDDDVVDESNLQRQIVHSTAAVGTSKVDSATQRMRDINPLITVKSYKEKLTSDNAL----RILADYDVVIDGCDNFPTRYLVNDACVILGKPLVY 158
                 447888899****************987777777777.....6799**************************************************9876532....456668**************************975 PP

>> TIGR03736  PRTRC_ThiF: PRTRC system ThiF family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.4   0.1   3.3e-10     2e-07       6     125 ..      33     147 ..      29     160 .. 0.80
   2 ?   -1.5   0.0      0.47   2.7e+02     110     146 ..     275     312 ..     266     348 .. 0.77

  Alignments for each domain:
  == domain 1    score: 28.4 bits;  conditional E-value: 3.3e-10
   TIGR03736   6 allskkvkvvlvGaGGtGsqllegLarlhkalkalGhpaGlkvtvlDdDtvseanvgRqa.fapadvGankaivlvqRvnqllg.ldWeakperleveealssa...dlvigavDnrkaRkaile 125
                 +l  k  kv+ vG+GG Gs  l  La        +G      +  +DdD v e+n+ Rq  ++ a vG++k +  +qR+  +   +  ++++e+l++++al+     d+vi   Dn   R  ++ 
  MMETSP1137-20121227|6619_1  33 QLKLKDAKVMCVGSGGLGSPALMYLAA-----AGVGT-----IGLVDDDVVDESNLQRQIvHSTAAVGTSKVDSATQRMRDINPlITVKSYKEKLTSDNALRILadyDVVIDGCDNFPTRYLVND 147
                 56668899***********87766653.....34444.....4568*************7367899************99888437889999999997766544455********9998877665 PP

  == domain 2    score: -1.5 bits;  conditional E-value: 0.47
   TIGR03736 110 vigavDnrkaRkailealeegssGar.ywLDlGnrkdd 146
                 +i++  +r aR  ++ea ++ ++G + + LD+ ++++ 
  MMETSP1137-20121227|6619_1 275 AIASARERFARIGVAEANSRLQKGWEpFVLDVRSKTEA 312
                 67777888899999999999999996699998776655 PP

>> TIGR01381  E1_like_apg7: E1-like protein-activating enzyme Gsa7p/Apg7p
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.0   1.9e-07   0.00011     335     416 ..      36     114 ..      31     120 .. 0.90

  Alignments for each domain:
  == domain 1    score: 18.6 bits;  conditional E-value: 1.9e-07
   TIGR01381 335 lssvkvlllGaGtlGcqvarvllGyGvrhitfvdngkvsfsnPvrqslynfedcleggegkaetaakalkrifPaieasgvr 416
                 l++ kv+ +G+G lG+     l   Gv  i +vd   v  sn  rq ++    +   g  k ++a++ ++ i P+i+ ++++
  MMETSP1137-20121227|6619_1  36 LKDAKVMCVGSGGLGSPALMYLAAAGVGTIGLVDDDVVDESNLQRQIVHS---TAAVGTSKVDSATQRMRDINPLITVKSYK 114
                 7899******************************************8865...3445689*****************99886 PP

>> TIGR03167  tRNA_sel_U_synt: tRNA 2-selenouridine synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   8.3e-05     0.049      62     118 ..     327     383 ..     307     387 .. 0.79

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 8.3e-05
   TIGR03167  62 elleevqelaekekevllyCwRGGlRSksl.awllkeagle.vlrleGGYKayRrlvld 118
                 ++++++q+   + +++l++C   G RS s  a l+ e+g+e ++ l+GG  a+ r + +
  MMETSP1137-20121227|6619_1 327 RQMKHIQSQLPRDRDILVHCK-TGIRSASAcAALA-EMGFErLYSLDGGINAWAREIDQ 383
                 457788888888889*****6.689**99967777.899852789*******9877655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (388 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       136  (0.0331546); expected 82.0 (0.02)
Passed bias filter:                      127  (0.0309605); expected 82.0 (0.02)
Passed Vit filter:                        24  (0.0058508); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.36u 0.18s 00:00:00.54 Elapsed: 00:00:00.48
# Mc/sec: 1066.91
//
Query:       MMETSP1137-20121227|6621_1  [L=294]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0042   12.6   5.6     0.0054   12.3   3.9    1.0  1  TIGR02169 SMC_prok_A: chromosome segregation protein SMC
     0.0083   11.7   8.5      0.011   11.3   5.9    1.0  1  TIGR02168 SMC_prok_B: chromosome segregation protein SMC
     0.0086   14.1   1.1      0.013   13.4   0.8    1.2  1  TIGR02894 DNA_bind_RsfA: transcription factor, RsfA family
  ------ inclusion threshold ------
       0.22    7.7   6.4        0.3    7.3   4.5    1.1  1  TIGR03185 DNA_S_dndD: DNA sulfur modification protein DndD
       0.39    7.4   5.6       0.53    7.0   3.9    1.1  1  TIGR01843 type_I_hlyD: type I secretion membrane fusion protein, HlyD family


Domain annotation for each model (and alignments):
>> TIGR02169  SMC_prok_A: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.3   3.9   6.5e-06    0.0054     357     443 ..     190     273 ..     174     284 .. 0.47

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 6.5e-06
   TIGR02169 357 keelkelkeeleelraeleevdkeaaelreelkelkekleklkeelnelkreldrlleelk....rleeelaelkaelerieekiaeleee 443
                  e+l+ +        a+ e+++k+ +e++   ++   ++++lk+  ++l+ el +l +  +    r +++ ++l+a+ ++i e+iael+++
  MMETSP1137-20121227|6621_1 190 GEHLQLS-------LARSEALAKDLEETKSSANATAANVDALKQSNESLQAELAKLSDAHEvlesRCSAAEEQLNAQATSIAEAIAELKAN 273
                 3333333.......34444444444444444444444444444444444444444444443000044455555555556666666666554 PP

>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.3   5.9   1.3e-05     0.011     229     391 ..     195     266 ..     175     280 .. 0.41

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 1.3e-05
   TIGR02168 229 llvlrleelkeeleeleeelkeaeeeleeleaelkeleeeleelrlekseleeeleelqkelqelkaeisrleqeieilkerleqlekeleeleeqleeleskkeeleeelaeleeeleelkeelesleaeleeaeaeleelesrleeleeeleelrsevael 391
                 l+++r e+l + lee+++++++++ ++++l++  + l++el++l ++++ le++  +++++l++ ++ i+                                                                                           e+
  MMETSP1137-20121227|6621_1 195 LSLARSEALAKDLEETKSSANATAANVDALKQSNESLQAELAKLSDAHEVLESRCSAAEEQLNAQATSIA-------------------------------------------------------------------------------------------EA 266
                 3333333333333333333333333333333333333333333333333333333333333333333333...........................................................................................22 PP

>> TIGR02894  DNA_bind_RsfA: transcription factor, RsfA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.8   1.6e-05     0.013      79     143 ..     194     258 ..     179     273 .. 0.86

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 1.6e-05
   TIGR02894  79 sltledviefLqnlketleeaeklrkekeklkeeleslqkrneeLekeleklkkkksvieedyet 143
                 +l+l +  ++ ++l+et+++a+++  + + lk+++eslq + ++L    e l+++ s+ ee+ ++
  MMETSP1137-20121227|6621_1 194 QLSLARSEALAKDLEETKSSANATAANVDALKQSNESLQAELAKLSDAHEVLESRCSAAEEQLNA 258
                 567777777889999999*****************************************998776 PP

>> TIGR03185  DNA_S_dndD: DNA sulfur modification protein DndD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   4.5   0.00037       0.3     166     258 ..     180     275 ..     176     278 .. 0.85

  Alignments for each domain:
  == domain 1    score: 7.3 bits;  conditional E-value: 0.00037
   TIGR03185 166 raasllkeaievlLgLdli..dqLkadLkvverrrkkeelese.ieseiealeaelkeqeekievlaqeiaalrkeleeaerkleslekkfeseGg 258
                 r a  +kea+ + L+L+l+  ++L+ dL+  +  ++   ++ + +++  e l+ael++++   evl+ +  a++++l+   +++ ++  +++ +G 
  MMETSP1137-20121227|6621_1 180 RMAVHIKEAVGEHLQLSLArsEALAKDLEETKSSANATAANVDaLKQSNESLQAELAKLSDAHEVLESRCSAAEEQLNAQATSIAEAIAELKANGX 275
                 67778999998888887762268**********9999998877355567889********************************999999998886 PP

>> TIGR01843  type_I_hlyD: type I secretion membrane fusion protein, HlyD family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   3.9   0.00065      0.53      92     165 ..     192     262 ..     174     280 .. 0.45

  Alignments for each domain:
  == domain 1    score: 7.0 bits;  conditional E-value: 0.00065
   TIGR01843  92 aleaevarlraeanseeaiefpdillsaedavaelvkeqeslfesrksalraqlesleaqikqleaeleglqaq 165
                  l++++ar +a+a++ e ++ ++  ++   a   ++k++++ +++++++l++  e le++    e++l+ ++  
  MMETSP1137-20121227|6621_1 192 HLQLSLARSEALAKDLEETKSSANATA---ANVDALKQSNESLQAELAKLSDAHEVLESRCSAAEEQLNAQATS 262
                 344445555555555554444433333...33333333333333333333333333333333333333333332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (294 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       212  (0.0516821); expected 82.0 (0.02)
Passed bias filter:                      131  (0.0319356); expected 82.0 (0.02)
Passed Vit filter:                        24  (0.0058508); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.32u 0.18s 00:00:00.50 Elapsed: 00:00:00.39
# Mc/sec: 994.99
//
Query:       MMETSP1137-20121227|6622_1  [L=394]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (394 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       144  (0.0351048); expected 82.0 (0.02)
Passed bias filter:                       96  (0.0234032); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.19s 00:00:00.49 Elapsed: 00:00:00.46
# Mc/sec: 1130.52
//
Query:       MMETSP1137-20121227|6623_1  [L=471]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (471 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       266  (0.0648464); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.14s 00:00:00.51 Elapsed: 00:00:00.42
# Mc/sec: 1480.16
//
Query:       MMETSP1137-20121227|6624_1  [L=83]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (83 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        81  (0.0197465); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.18s 00:00:00.31 Elapsed: 00:00:00.31
# Mc/sec: 353.39
//
Query:       MMETSP1137-20121227|6625_1  [L=278]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (278 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        99  (0.0241346); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.16s 00:00:00.39 Elapsed: 00:00:00.41
# Mc/sec: 894.95
//
Query:       MMETSP1137-20121227|6626_1  [L=229]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (229 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        93  (0.0226719); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.14s 00:00:00.33 Elapsed: 00:00:00.33
# Mc/sec: 915.92
//
Query:       MMETSP1137-20121227|6627_1  [L=451]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (451 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        61  (0.0148708); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.17s 00:00:00.52 Elapsed: 00:00:00.36
# Mc/sec: 1653.53
//
Query:       MMETSP1137-20121227|6628_1  [L=338]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      1e-08   33.0   0.1    3.4e-08   31.3   0.0    1.8  2  TIGR00444 mazG: MazG family protein


Domain annotation for each model (and alignments):
>> TIGR00444  mazG: MazG family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0     0.087   3.6e+02      10      30 ..      16      36 ..       8      47 .. 0.64
   2 !   31.3   0.0   8.2e-12   3.4e-08      43     123 ..      94     174 ..      84     190 .. 0.83

  Alignments for each domain:
  == domain 1    score: -1.6 bits;  conditional E-value: 0.087
   TIGR00444 10 gGcPwdkkqt.yqslisylvee 30
                + cPw k  + y+sl +    e
  MMETSP1137-20121227|6628_1 16 QRCPWTKSTNaYDSLFHL-RAE 36
                57***9976526676554.334 PP

  == domain 2    score: 31.3 bits;  conditional E-value: 8.2e-12
   TIGR00444  43 iddlreelGdlllqvvly.aqlaqdegy.falddviegiseklvrrhPhvfadvkvedeeevlarweeikakekalkeeetsl 123
                 +++l++elGd+l+  +l  +  a+d+   ++ld+ + + ++kl rr P+v +d ++ +  e++  w+  kake+ + ++ ts 
  MMETSP1137-20121227|6628_1  94 QSELADELGDVLFNALLLvSICARDHANgLTLDECAVAACAKLRRRAPYVDGD-RAPNVAEAQELWQAGKAKERREAQD-TSS 174
                 6799*********98765155677765439********************998.5789999*************99888.443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (338 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       114  (0.0277913); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.27u 0.16s 00:00:00.43 Elapsed: 00:00:00.37
# Mc/sec: 1205.74
//
Query:       MMETSP1137-20121227|6629_1  [L=233]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (233 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       158  (0.0385178); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.15s 00:00:00.36 Elapsed: 00:00:00.33
# Mc/sec: 931.92
//
Query:       MMETSP1137-20121227|6630_1  [L=216]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (216 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        47  (0.0114578); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.15s 00:00:00.34 Elapsed: 00:00:00.38
# Mc/sec: 750.25
//
Query:       MMETSP1137-20121227|6631_1  [L=389]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (389 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       299  (0.0728913); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.15s 00:00:00.49 Elapsed: 00:00:00.36
# Mc/sec: 1426.22
//
Query:       MMETSP1137-20121227|6632_1  [L=320]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.3e-23   80.8   0.0    3.8e-18   63.7   0.0    2.1  2  TIGR03695 menH_SHCHC: 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase
    2.2e-20   71.0   0.0    4.3e-16   56.9   0.0    2.1  2  TIGR02427 protocat_pcaD: 3-oxoadipate enol-lactonase
    2.6e-16   57.3   0.0      3e-11   40.7   0.0    2.2  2  TIGR03056 bchO_mg_che_rel: putative magnesium chelatase accessory protein
    2.7e-15   54.5   0.0    4.2e-14   50.6   0.0    2.1  1  TIGR01738 bioH: putative pimeloyl-BioC--CoA transferase BioH
    5.5e-15   53.3   0.0    8.5e-14   49.4   0.0    2.3  3  TIGR03611 RutD: pyrimidine utilization protein D
      7e-09   33.1   0.4    5.3e-07   27.0   0.3    2.3  1  TIGR03343 biphenyl_bphD: 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase
    9.4e-08   29.8   0.0     0.0013   16.2   0.0    2.1  2  TIGR01250 pro_imino_pep_2: proline-specific peptidases
    3.5e-06   24.2   0.0    6.2e-06   23.4   0.0    1.3  1  TIGR01249 pro_imino_pep_1: prolyl aminopeptidase
    0.00012   19.6   0.0    0.00018   19.0   0.0    1.3  1  TIGR02821 fghA_ester_D: S-formylglutathione hydrolase
     0.0014   15.9   0.0      0.018   12.2   0.0    2.1  2  TIGR02240 PHA_depoly_arom: poly(3-hydroxyalkanoate) depolymerase
  ------ inclusion threshold ------
      0.032   11.1   0.0       0.09    9.7   0.0    1.7  2  TIGR01392 homoserO_Ac_trn: homoserine O-acetyltransferase


Domain annotation for each model (and alignments):
>> TIGR03695  menH_SHCHC: 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.7   0.0     1e-20   3.8e-18       2     102 ..      73     169 ..      72     173 .. 0.89
   2 !   15.1   0.0   6.5e-06    0.0024     192     250 ..     259     317 ..     233     319 .. 0.82

  Alignments for each domain:
  == domain 1    score: 63.7 bits;  conditional E-value: 1e-20
   TIGR03695   2 kpvlvlLHGflgskedwqalieeleekfsvlalDLpgHGkskslkekeakdfeeaaqellkelleklkiekviLvGYSlGGRialalaleaperleglile 102
                 +p l++LHG++gs++++++++++l+e+ sv + DL  HG+s  +++ +++++++ +     +l+++l+  ++ L+G SlGG++a+ +al++per+ +l+++
  MMETSP1137-20121227|6632_1  73 DPPLIILHGLFGSSSNFRSIAKKLSEQRSVYLPDLRNHGDSPWHADASPQAMANDV----VKLMDNLELPRIALCGHSLGGKVAMLVALQHPERVARLCVV 169
                 689***************************************99666666665555....5588999999***************************9986 PP

  == domain 2    score: 15.1 bits;  conditional E-value: 6.5e-06
   TIGR03695 192 kelklpvlylvGekDekFkkia.kemqkllpalklevieeaGHnihlenpeafakileef 250
                 ++ ++p++++ Gek    ++   +++++ +p++kl++++ +GH +h e+p++f + l  f
  MMETSP1137-20121227|6632_1 259 SQADMPTFFIGGEKEGMLESSHfETCRRFFPNSKLHMMQ-TGHWVHAEQPAEFIRLLGDF 317
                 677899999999999998876525667788999999986.5************9988766 PP

>> TIGR02427  protocat_pcaD: 3-oxoadipate enol-lactonase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.9   0.0   1.1e-18   4.3e-16       7     113 ..      68     172 ..      62     191 .. 0.85
   2 !   12.4   0.0   4.5e-05     0.017     191     249 ..     260     317 ..     210     319 .. 0.93

  Alignments for each domain:
  == domain 1    score: 56.9 bits;  conditional E-value: 1.1e-18
   TIGR02427   7 egaeadkpvlvlinSLGtdlrlwdkvlealtkdfrvlryDkrGHGlSdvpegpysiedladdvlallDalgiekaavcGlSlGGliaqaLaarrpdrvealvlsnta 113
                  ++  ++p l+++  L  + + +++++++l+++ +v   D r HG S    +++s + +a+dv++l+D+l++ ++a+cG SlGG +a+  a+++p+rv++l +++ a
  MMETSP1137-20121227|6632_1  68 PAKM-NDPPLIILHGLFGSSSNFRSIAKKLSEQRSVYLPDLRNHGDSPWH-ADASPQAMANDVVKLMDNLELPRIALCGHSLGGKVAMLVALQHPERVARLCVVDIA 172
                 4555.45555555555555566899**********************976.56799*********************************************999876 PP

  == domain 2    score: 12.4 bits;  conditional E-value: 4.5e-05
   TIGR02427 191 eiavPtlviaGdeDgstPpelvreiadlvpgarfaeieeaaHlpnleqpeafaallrdf 249
                 +  +Pt  i G+++g    ++ ++     p+++++ ++ ++H   +eqp++f +ll df
  MMETSP1137-20121227|6632_1 260 QADMPTFFIGGEKEGMLESSHFETCRRFFPNSKLHMMQ-TGHWVHAEQPAEFIRLLGDF 317
                 5679*********************************9.****************9998 PP

>> TIGR03056  bchO_mg_che_rel: putative magnesium chelatase accessory protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.7   0.0   8.1e-14     3e-11      27     127 ..      72     172 ..      53     193 .. 0.84
   2 !   14.4   0.0   8.4e-06    0.0031     219     276 ..     261     317 ..     253     319 .. 0.92

  Alignments for each domain:
  == domain 1    score: 40.7 bits;  conditional E-value: 8.1e-14
   TIGR03056  27 aGPvllllhGagasshsfrklvpllaarfrvvapdlPGhGftratarfrfslkamaedlakllaaedlsPdaviGhsaGaaialrlaldlpvr..Pravvgin 127
                 + P l++lhG+ +ss  fr +  +l+++  v  pdl  hG +    +   s +ama+d+ kl+ +++l   a+ Ghs G+ +a+ +al+ p r     vv i 
  MMETSP1137-20121227|6632_1  72 NDPPLIILHGLFGSSSNFRSIAKKLSEQRSVYLPDLRNHGDSP--WHADASPQAMANDVVKLMDNLELPRIALCGHSLGGKVAMLVALQHPERvaRLCVVDIA 172
                 458899**********************************765..5555899******************************999999988541033455554 PP

  == domain 2    score: 14.4 bits;  conditional E-value: 8.4e-06
   TIGR03056 219 iavPvlliageedkavppdvskeaatrlplatlrevpGlGhlvheedadgvaglilda 276
                  ++P+++i ge+++ + ++  +   +++p + l+ ++  Gh vh e+++    l+ d+
  MMETSP1137-20121227|6632_1 261 ADMPTFFIGGEKEGMLESSHFETCRRFFPNSKLHMMQT-GHWVHAEQPAEFIRLLGDF 317
                 589*********************************99.*********9998888776 PP

>> TIGR01738  bioH: putative pimeloyl-BioC--CoA transferase BioH
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.6   0.0   1.1e-16   4.2e-14       6     244 ..      75     317 ..      71     318 .. 0.77

  Alignments for each domain:
  == domain 1    score: 50.6 bits;  conditional E-value: 1.1e-16
   TIGR01738   6 klvLihGWglnaevfadlveeLsahftlslvDLPGyGdsaelralslaevaeailaqapa....kaiwlGWsLGGLvalhlalthpdkvrsLvlvasspkfaaredwpegieadvltkfa.eqlksdyq...ktierflaLqtlgsesarqdvralkqallarptPnvqaLqagLellaevDlRralqkisvPvLrlyGqkDalvPakvvealdklapqsellvlekaahaPflshaeafaallref 244
                  l+++hG    ++ f++++++Ls++ +++l DL  +Gds+    +s +++a+ +++ +++    +  + G sLGG va+ +al+hp++v  L++v  +p     e  + +i  +vl ++  e l+s  +     ie   ++ +l+ +  rq + +     ++r   nv+aL      ++   + ++  + ++P+  + G+k+++  +   e+  + +p+s+l +++ ++h     ++++f +ll +f
  MMETSP1137-20121227|6632_1  75 PLIILHGLFGSSSNFRSIAKKLSEQRSVYLPDLRNHGDSPWHADASPQAMANDVVKLMDNlelpRIALCGHSLGGKVAMLVALQHPERVARLCVVDIAPIKYTMEGNR-SI-LEVLHAMSpESLSSRKAadaALIEASEKVSALKIQMVRQFLMQNLLVDQRRWRVNVEALLRDYPSMQDF-IASPGSQADMPTFFIGGEKEGMLESSHFETCRRFFPNSKLHMMQ-TGHWVHAEQPAEFIRLLGDF 317
                 5899***9999***************************9998888888888888876664222245678**************************9999766666666.44.456666652566655441114566666677777777777665555455566777888888877766655.45677899******************************999885.67888888888888888777 PP

>> TIGR03611  RutD: pyrimidine utilization protein D
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0       2.3   8.5e+02     122     145 ..      21      45 ..      19      47 .. 0.78
   2 !   49.4   0.0   2.3e-16   8.5e-14      10     112 ..      70     170 ..      62     175 .. 0.91
   3 ?    1.0   0.0      0.13        47     222     255 ..     286     318 ..     262     320 .] 0.84

  Alignments for each domain:
  == domain 1    score: -3.1 bits;  conditional E-value: 2.3
   TIGR03611 122 rrCfdvr.kkLLekaGaeayvkaqa 145
                 +rC d +  +LL+k Ga+ +  a+ 
  MMETSP1137-20121227|6632_1  21 HRCIDFQgCSLLTKQGAAGWASARG 45 
                 6888876368999999999998875 PP

  == domain 2    score: 49.4 bits;  conditional E-value: 2.3e-16
   TIGR03611  10 dadaevvvlssGLGGsgsywapqlevleqefrvvvyDhrGtgrspeelaedysiaalaadvlelldaldiekahvvGhalGgliglelalrkperlaklvlin 112
                 + + + +++  GL Gs+s + +  + l+++  v + D r  g sp    +d s +a+a+dv++l+d+l++ ++++ Gh+lGg +++ +al++per+a+l +++
  MMETSP1137-20121227|6632_1  70 KMNDPPLIILHGLFGSSSNFRSIAKKLSEQRSVYLPDLRNHGDSPW--HADASPQAMANDVVKLMDNLELPRIALCGHSLGGKVAMLVALQHPERVARLCVVD 170
                 45667778889*******************************9986..5788999********************************************9985 PP

  == domain 3    score: 1.0 bits;  conditional E-value: 0.13
   TIGR03611 222 ekLPdaelklleyGghasnvtdpetfnellldfL 255
                 + +P+++l++++  gh + + +p +f +ll df 
  MMETSP1137-20121227|6632_1 286 RFFPNSKLHMMQT-GHWVHAEQPAEFIRLLGDFC 318
                 558*****99987.59999999****99999986 PP

>> TIGR03343  biphenyl_bphD: 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.0   0.3   1.4e-09   5.3e-07      88     280 ..     125     318 ..      81     320 .] 0.67

  Alignments for each domain:
  == domain 1    score: 27.0 bits;  conditional E-value: 1.4e-09
   TIGR03343  88 aravkglmdaldiekahlvgnsmggatalnfaleypdrlgklilmgpgglgksllaampmegikllfklyaepsletlke.mlnvflfdqsliteellqgrweniqrrpehlk.nfllsskkaplsawdvvdrlgeikaktlvtwgrddrfvpldhglklvanlpdaqlhvfsrcghwaqwehadafnrlvidfl 280
                 a  v  lmd l++ +  l g s+gg  a+  al++p+r+ +l ++  + +  ++  +  + ++ + +   +  s ++    +++      +l  + ++q   +n++ +    + n  +  +  p     +++  ++ +  t+   g  + ++   h      ++p+++lh++ + ghw   e+  +f rl  df 
  MMETSP1137-20121227|6632_1 125 ANDVVKLMDNLELPRIALCGHSLGGKVAMLVALQHPERVARLCVVDIAPIKYTMEGNRSILEVLHAMSPESLSSRKAADAaLIEASEKVSALKIQMVRQFLMQNLLVDQRRWRvNVEALLRDYPSMQDFIASPGSQADMPTFFIGGEKEGMLESSHFETCRRFFPNSKLHMM-QTGHWVHAEQPAEFIRLLGDFC 318
                 667888*************************************999888876665544433333222222222222211101111111122223333444444444433333313333334444433334444455666788888888888888888888889999999976.5799999999999999988886 PP

>> TIGR01250  pro_imino_pep_2: proline-specific peptidases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0   3.6e-06    0.0013      22     188 ..      70     237 ..      57     250 .. 0.66
   2 !   11.8   0.0   7.7e-05     0.029     230     286 ..     261     317 ..     244     319 .. 0.89

  Alignments for each domain:
  == domain 1    score: 16.2 bits;  conditional E-value: 3.6e-06
   TIGR01250  22 egekikllvlHGGPgssheyleslkellkegvevilYDQLGsgkSdqPddsdeklltidrfvdEleevrekLaldkfyllgqSwGglLaqeYalkyqqhlkgliiss......mlasipeyvkelnrlr.kklpleeveaikrieasgdyddpeYqeavevlnkhlvartrkqp 188
                 + ++ +l++lHG  gss +   s+++ l e ++v+l D       d P + d      + + +++ ++ ++L+l ++ l g+S Gg  a+  al+ ++ +  l +        +++      + l+ ++ + l+  + +    ieas++    + q   + l+++l+  +r++ 
  MMETSP1137-20121227|6632_1  70 KMNDPPLIILHGLFGSSSNF-RSIAKKLSEQRSVYLPDLRNH--GDSPWHAD---ASPQAMANDVVKLMDNLELPRIALCGHSLGGKVAMLVALQHPERVARLCVVDiapikyTMEGNRSILEVLHAMSpESLSSRKAADAALIEASEKVSALKIQMVRQFLMQNLLVDQRRWR 237
                 45689********9999875.5555555555*****997655..56676666...367788899999********************************998877541100002222222223333333344444444444445556665555555555555566655555555 PP

  == domain 2    score: 11.8 bits;  conditional E-value: 7.7e-05
   TIGR01250 230 IkvPtLltvgefdem.tpeaaremqekiaksrlvvfedgshltmieepeeylkllkdf 286
                   +Pt ++ ge + m + ++ ++ +   ++s+l++++ ++h    e+p+e+++ll df
  MMETSP1137-20121227|6632_1 261 ADMPTFFIGGEKEGMlESSHFETCRRFFPNSKLHMMQ-TGHWVHAEQPAEFIRLLGDF 317
                 579*********988467899*************986.579999************99 PP

>> TIGR01249  pro_imino_pep_1: prolyl aminopeptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.4   0.0   1.7e-08   6.2e-06      25     125 ..      71     168 ..      60     184 .. 0.89

  Alignments for each domain:
  == domain 1    score: 23.4 bits;  conditional E-value: 1.7e-08
   TIGR01249  25 PdGkPvvflhGGPGsGtdeecrkffdpevyrivlldqrGaGkskphaileenttwdlvadieklreklkikkWlvfGGsWGstlalayaqkhPekvtklvl 125
                  +  P+++lhG  Gs ++ +       e+  + l d r  G s  ha     + + + +d+ kl ++l++++  + G s G  +a+  a +hPe+v +l +
  MMETSP1137-20121227|6632_1  71 MNDPPLIILHGLFGSSSNFRSIAKKLSEQRSVYLPDLRNHGDSPWHAD---ASPQAMANDVVKLMDNLELPRIALCGHSLGGKVAMLVALQHPERVARLCV 168
                 56779**********99988888778888999999********99985...5667899**************************************99976 PP

>> TIGR02821  fghA_ester_D: S-formylglutathione hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.0   4.8e-07   0.00018     135     227 ..     135     232 ..     113     249 .. 0.67

  Alignments for each domain:
  == domain 1    score: 19.0 bits;  conditional E-value: 4.8e-07
   TIGR02821 135 ldaerqgitGhsmGGhGalvialknPdlfk..svsafaPivaPsrspwgrkafskylGadeaawksydasllvkelglesei...lidqGladkflde 227
                 l+  r +++Ghs+GG+ a+++al++P++     v   aPi   ++ + +   + + + +++ + ++   ++l++ ++  s +   ++ q l+ + l +
  MMETSP1137-20121227|6632_1 135 LELPRIALCGHSLGGKVAMLVALQHPERVArlCVVDIAPIKYTMEGNRSILEVLHAMSPESLSSRKAADAALIEASEKVSALkiqMVRQFLMQNLLVD 232
                 56668899*******************98623577899998887777766655555555554444443344555554443330024445555555544 PP

>> TIGR02240  PHA_depoly_arom: poly(3-hydroxyalkanoate) depolymerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.2   0.0   4.9e-05     0.018      20     134 ..      68     181 ..      58     198 .. 0.74
   2 ?    1.2   0.0      0.11        40     208     247 ..     263     302 ..     259     315 .. 0.81

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 4.9e-05
   TIGR02240  20 pgkegltpllifngiganlelvfpfvealdpeleviafdvpgvggsstprvpyrfp.glaklaarmldyldygqvnvigvswggalaqqfahdyperckklvlaataagavmvpgk 134
                 p k +  pl+i+ g+         + + l  +  v   d+   g s  p +    p  +a+ + +++d l+  ++   g s gg +a  +a ++per+ +l +   a     + g+
  MMETSP1137-20121227|6632_1  68 PAKMNDPPLIILHGLFGSSSNFRSIAKKLSEQRSVYLPDLRNHGDS--PWHADASPqAMANDVVKLMDNLELPRIALCGHSLGGKVAMLVALQHPERVARLCVVDIAPIKYTMEGN 181
                 5666666777777766665555566666777777776677666554..4444444426899999************************************9988776655555555 PP

  == domain 2    score: 1.2 bits;  conditional E-value: 0.11
   TIGR02240 208 qptlvlagdddpliplinmrllawripnaelhviddghlf 247
                  pt+ + g+ + ++    +       pn++lh+++ gh +
  MMETSP1137-20121227|6632_1 263 MPTFFIGGEKEGMLESSHFETCRRFFPNSKLHMMQTGHWV 302
                 57888888888888888888888889************75 PP

>> TIGR01392  homoserO_Ac_trn: homoserine O-acetyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.0   0.00024      0.09     117     159 ..     128     169 ..     106     184 .. 0.80
   2 ?   -2.1   0.0      0.88   3.3e+02     303     342 ..     175     212 ..     172     221 .. 0.79

  Alignments for each domain:
  == domain 1    score: 9.7 bits;  conditional E-value: 0.00024
   TIGR01392 117 qkalldsLgveklaavvGgSlGGmqalewalsypervkkivvl 159
                   +l+d+L + ++a   G SlGG  a+  al+ perv ++ v+
  MMETSP1137-20121227|6632_1 128 VVKLMDNLELPRIA-LCGHSLGGKVAMLVALQHPERVARLCVV 169
                 34689999999975.68********************998776 PP

  == domain 2    score: -2.1 bits;  conditional E-value: 0.88
   TIGR01392 303 lftleeqeelakalkaakleyaeieseeGHDaFllekekv 342
                 ++t+e ++++ + l+a++ e   ++s +  Da l+e+++ 
  MMETSP1137-20121227|6632_1 175 KYTMEGNRSILEVLHAMSPE--SLSSRKAADAALIEASEK 212
                 68888899999999999888..999999999999998554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (320 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       127  (0.0309605); expected 82.0 (0.02)
Passed bias filter:                      117  (0.0285227); expected 82.0 (0.02)
Passed Vit filter:                        20  (0.00487567); expected 4.1 (0.001)
Passed Fwd filter:                        11  (0.00268162); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.35u 0.18s 00:00:00.53 Elapsed: 00:00:00.76
# Mc/sec: 555.74
//
Query:       MMETSP1137-20121227|6633_1  [L=203]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.7e-06   24.0   0.0    1.2e-05   22.3   0.0    1.6  2  TIGR02716 C20_methyl_CrtF: C-20 methyltransferase BchU
     0.0012   16.5   0.0     0.0026   15.4   0.0    1.6  2  TIGR02764 spore_ybaN_pdaB: polysaccharide deacetylase family sporulation protein PdaB


Domain annotation for each model (and alignments):
>> TIGR02716  C20_methyl_CrtF: C-20 methyltransferase BchU
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0     0.067   1.4e+02      20      48 ..      22      50 ..      19      65 .. 0.88
   2 !   22.3   0.0   5.9e-09   1.2e-05     203     302 ..      68     170 ..      58     173 .. 0.83

  Alignments for each domain:
  == domain 1    score: -0.8 bits;  conditional E-value: 0.067
   TIGR02716 20 aeapkdladlaadtesvpprlekllitle 48
                a++p++ +dla++       le +l+ ++
  MMETSP1137-20121227|6633_1 22 ASSPRKTSDLASELSLCEVALEAVLQLMR 50
                8999*******999999999999999887 PP

  == domain 2    score: 22.3 bits;  conditional E-value: 5.9e-09
   TIGR02716 203 gvavdiykesypea.davlfsrilysaneqlstillkkaydalrsggrllildmviddpenpnydylshyllaigmgfsvlefkeqa..vykelleslgykdv 302
                 ++ ++++ + +p++ davl+s +l+   e+ +  +l++a  al+ gg +l+ +m + d ++   +      l++ m++   e  +++  + +e+l +  ++dv
  MMETSP1137-20121227|6633_1  68 PIQLNLFADDWPQGyDAVLLSSVLHDWSEEEAVAILQRACRALKPGGVVLVHEMPLADSDDCSEQAQLAAALSVHMALYTAEGAQRTveRMHEILCEASFQDV 170
                 79999*******9879******************************************999877666666777788777766655541256788888888887 PP

>> TIGR02764  spore_ybaN_pdaB: polysaccharide deacetylase family sporulation protein PdaB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   1.3e-06    0.0026     119     159 ..      80     120 ..      64     142 .. 0.85
   2 ?   -2.0   0.0      0.27   5.5e+02      74     101 ..     146     173 ..     130     190 .. 0.63

  Alignments for each domain:
  == domain 1    score: 15.4 bits;  conditional E-value: 1.3e-06
   TIGR02764 119 lgykvvqwsvdslDwknpgvekivdrvvknvksGdiiLlHa 159
                 +gy++v  s   +Dw ++   +i++r ++++k+G ++L+H 
  MMETSP1137-20121227|6633_1  80 QGYDAVLLSSVLHDWSEEEAVAILQRACRALKPGGVVLVHE 120
                 79**************************************3 PP

  == domain 2    score: -2.0 bits;  conditional E-value: 0.27
   TIGR02764  74 lekekikkdllkaqeviekltgkkpkll 101
                    e  ++ +++ +e++ +++ +++  l
  MMETSP1137-20121227|6633_1 146 YTAEGAQRTVERMHEILCEASFQDVLTL 173
                 4455556666666666666666555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (203 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       122  (0.0297416); expected 82.0 (0.02)
Passed bias filter:                      110  (0.0268162); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.24u 0.12s 00:00:00.36 Elapsed: 00:00:00.83
# Mc/sec: 322.82
//
Query:       MMETSP1137-20121227|6634_1  [L=966]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   1.4e-105  350.7   0.0    3.2e-55  185.2   0.0    2.5  2  TIGR00975 3a0107s03: phosphate ABC transporter, phosphate-binding protein PstS
    1.1e-17   62.0   0.0    1.1e-08   32.5   0.0    4.3  2  TIGR02136 ptsS_2: phosphate binding protein
    0.00022   18.4   0.0     0.0042   14.2   0.0    2.2  2  TIGR00971 3a0106s03: sulfate ABC transporter, sulfate-binding protein
  ------ inclusion threshold ------
      0.013   13.6   0.1       0.39    8.9   0.1    2.7  3  TIGR03931 T7SS_Rv3446c: type VII secretion-associated protein, Rv3446c family


Domain annotation for each model (and alignments):
>> TIGR00975  3a0107s03: phosphate ABC transporter, phosphate-binding protein PstS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  162.9   0.0     2e-51   2.1e-48      50     305 ..       2     270 ..       1     279 [. 0.89
   2 !  185.2   0.0   3.1e-58   3.2e-55       2     314 ..     347     683 ..     346     684 .. 0.88

  Alignments for each domain:
  == domain 1    score: 162.9 bits;  conditional E-value: 2e-51
   TIGR00975  50 dfgasDaplse...aalkkegeqllqlplvigavvvayNlpgvs...keeLkLdgdvlakiflGkikkWndpaiaalNPevklPetkitvvhRsDgSGttavftkyLskvske.wkekvgaGktvnwpagvgakgNdGvaavvketpgaigYvelsyakenklsvaalknsaGkfvkpdaesikaaaagvkista......kedaksltdapgdeayPivaatylivlkkqkd..eekakalkaflewalt.egqkaaddldyiplPesvvk 305
                 dfg+ D p+++   +al+++g q+l++p ++ga+ v   +p  +   +++L+Ld  +lakif G+i++W+dp+i+alNP++ +   +i v+hR  gS  ta ft+yL    +  w   +g G+t+nwp+g+ ++g +G++ ++k   +aigY++ ++a  n l + +l n++G  +  ++  i aaa  + +++          a+ l+d pg++++Pi+ + yl + k+  +  + +a+ l af+e+ l  egq  a+++ +  lP+s+ +
  MMETSP1137-20121227|6634_1   2 DFGSGDIPMTAdrfNALTASGRQMLHIPFALGAIGVWHSVPATElgaAGTLELDACLLAKIFSGQITTWGDPQIKALNPDL-VSTAPIKVAHRKLGSSSTAGFTEYLXLXCPXxWT--LGSGSTINWPVGTENEGSGGMTDYIKANDYAIGYIDSGHAIDNDLIEVKLVNKNGLALFSKDADIGAAARIALANNDfpaadaDWSAVNLYDRPGNTTWPITMVSYLYLDKNLSYqdPGTAALLMAFVEFLLSeEGQVLAEENLFDRLPPSLIQ 270
                 9*********98888899999********************986444689*****************************98.68899**********************99998*9..*******************************************************8877777777776655444433456554556788********************998554338899999********978999************9876 PP

  == domain 2    score: 185.2 bits;  conditional E-value: 3.1e-58
   TIGR00975   2 tgaGstfpapliskwvedyeksnpakvtvnyqskGSgaGikqia...........aktvdfgasDaplse...aalkkegeqllqlplvigavvvayNlpgvs...keeLkLdgdvlakiflGkikkWndpaiaalNPevklPetkitvvhRsDgSGttavftkyLskvske.wkekvgaGktvnwpagvgakgNdGvaavvketpgaigYvelsyakenklsvaalknsaGkfvkpdaesikaaaagvkista......kedaksltdapgdeayPivaatylivlkk..qkdeekakalkaflewalt.egqkaaddldyiplPesvvkkvkkavnti 314
                 +g+G+t p  l+ + +e  e++ +++  + y+++GS++G+++++           ++ +dfg+ D p+++   +al+++g q+l++p ++ga+ v   +p  +   +++L+Ld  +lakif G+i++W+dp+i+alNP++ +   +i v+hR  gS  ta ft+yLs   +  w   +g G+t+nwp+g+ ++g +G++ ++k   +aigY++ ++a  n l + +l n++G  +  ++  i aaa  + +++          a+ l+d++g  ++Pi+ + y+ v k+   kd+e+a+ + af+++ l  egq+ a ++ + plP+++ + +++a++ti
  MMETSP1137-20121227|6634_1 347 HGSGTTNPSRLFWEVMELLEARVKSNLVLSYRAVGSSTGQREFVcdptdyaecnsEALIDFGSGDIPMTAdrfNALTASGRQMLHIPFALGAIGVWHSVPATElgaAGTLELDACLLAKIFSGQITTWGDPQIKALNPDL-VSTAPIKVAHRKLGSSSTAGFTEYLSLKCPSdWT--LGSGSTINWPVGTENEGSGGMTDYIKANDYAIGYIDSGHAIDNDLIEVKLVNKNGLALFSKDADIGAAARIALANNDfpaadaDWSAVNLYDKAGTSTWPITMVSYIYVDKDisSKDPETAALVMAFINFLLSpEGQALAVENLFDPLPPELIAFANAALATI 683
                 689**************************************9963333333333357899*********98888899999********************986444689*****************************98.68899*********************776655*9..*******************************************************8877777777776655444433456554556788*********************9833567****************9******************99999988876 PP

>> TIGR02136  ptsS_2: phosphate binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3   0.0   2.7e-08   2.8e-05     135     237 ..      53     199 ..       1     261 [. 0.63
   2 !   32.5   0.0   1.1e-11   1.1e-08      88     288 ..     405     662 ..     347     665 .. 0.77

  Alignments for each domain:
  == domain 1    score: 21.3 bits;  conditional E-value: 2.7e-08
   TIGR02136 135 dLtveqlkkIyeGeitnWkeVggk......lpnkkivvvgreassGTrdtFeeavlkkakikreke..........taqedngvvvqsvsknpnaigYlglgyvveskk.kvkplkvng...........................v 237
                 +L+   l kI++G+it+W + + k         ++i+v  r+ +s + + F+e                       t++e++g +   +  n +aigY+  g   ++    vk + +ng                           +
  MMETSP1137-20121227|6634_1  53 ELDACLLAKIFSGQITTWGDPQIKalnpdlVSTAPIKVAHRKLGSSSTAGFTEYLXLXCPXXWTLGsgstinwpvgTENEGSGGMTDYIKANDYAIGYIDSGHAIDNDLiEVKLVNKNGlalfskdadigaaarialanndfpaadA 199
                 56667799**********8744333333366789******************987543222221112233444555*****************************996666666667767766655555555555555555555442 PP

  == domain 2    score: 32.5 bits;  conditional E-value: 1.1e-11
   TIGR02136  88 vdignssRpikeeekeklkqkgkelielkvAvdglavv..Vnkknvkvk...dLtveqlkkIyeGeitnWkeVggk......lpnkkivvvgreassGTrdtFeeavlkkakikreke..........taqedngvvvqsvsknpnaigYlglgyvveskk.kvkplkvng...............................vepskeniangsYqlsrplfiyvnkkpakk....keevkeFidfvlskdtqeklve 288
                 +d+g  + p+ +   ++l + g ++  ++ A+ ++ v   V   +   +   +L+   l kI++G+it+W + + k         ++i+v  r+ +s + + F+e    k                  t++e++g +   +  n +aigY+  g   ++    vk + +ng                               + +  + + + +++++   +iyv+k   +k    + +v +Fi+f ls++ q  +ve
  MMETSP1137-20121227|6634_1 405 IDFGSGDIPMTADRFNALTASGRQMLHIPFALGAIGVWhsVPATELGAAgtlELDACLLAKIFSGQITTWGDPQIKalnpdlVSTAPIKVAHRKLGSSSTAGFTEYLSLKCPSDWTLGsgstinwpvgTENEGSGGMTDYIKANDYAIGYIDSGHAIDNDLiEVKLVNKNGlalfskdadigaaarialanndfpaadadwsAVNLYDKAGTSTWPITMVSYIYVDKDISSKdpetAALVMAFINFLLSPEGQALAVE 662
                 56777777777777777777777777777777776664225444443322226777789***********8744333333366789******************987655433222223355777777*******************************666777777777************************9997766444556677899************9865553355678899********86665554 PP

>> TIGR00971  3a0106s03: sulfate ABC transporter, sulfate-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.0     0.031        31     233     269 ..     224     262 ..     216     279 .. 0.79
   2 !   14.2   0.0   4.1e-06    0.0042     232     277 ..     627     674 ..     617     685 .. 0.82

  Alignments for each domain:
  == domain 1    score: 1.5 bits;  conditional E-value: 0.031
   TIGR00971 233 vvdkvv..ekkgtkkvaeaylkylyspeaqeiiaknyyr 269
                 ++dk++  +  gt +   a++++l s e+q ++ +n + 
  MMETSP1137-20121227|6634_1 224 YLDKNLsyQDPGTAALLMAFVEFLLSEEGQVLAEENLFD 262
                 568887224456888889**************9998764 PP

  == domain 2    score: 14.2 bits;  conditional E-value: 4.1e-06
   TIGR00971 232 svvdkvvekkgtkkva..eaylkylyspeaqeiiaknyyrvrdaevak 277
                  +vdk +  k+ + +a   a++++l spe+q ++ +n + +  +e++ 
  MMETSP1137-20121227|6634_1 627 IYVDKDISSKDPETAAlvMAFINFLLSPEGQALAVENLFDPLPPELIA 674
                 479*****999777663379******************9998888765 PP

>> TIGR03931  T7SS_Rv3446c: type VII secretion-associated protein, Rv3446c family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.0     0.084        87      69     135 ..     279     341 ..     277     359 .. 0.81
   2 ?   -3.2   0.0       1.9     2e+03      66      80 ..     510     524 ..     498     527 .. 0.81
   3 ?    8.9   0.1   0.00038      0.39       2      59 ..     792     849 ..     787     879 .. 0.74

  Alignments for each domain:
  == domain 1    score: 1.2 bits;  conditional E-value: 0.084
   TIGR03931  69 vevPagwrltsatrsarlqvltgeDpelrihvaedplk.gaeldavaaeleaaiaadptfvdleeadv 135
                 v++P+++     t +  +qv tg++  + ++ ++ + +   e +a++++l a +a++++ ++ + a+v
  MMETSP1137-20121227|6634_1 279 VTLPEDY--LPFTVETDTQVITGQG--IFVLSSKRESFaTYERKAIEERLTALVAESES-LETRVAAV 341
                 7889999..566788899999**99..77777777777799*****************9.55555544 PP

  == domain 2    score: -3.2 bits;  conditional E-value: 1.9
   TIGR03931  66 rvavevPagwrltsa 80 
                  ++++ P++w l+s+
  MMETSP1137-20121227|6634_1 510 YLSLKCPSDWTLGSG 524
                 567899****99886 PP

  == domain 3    score: 8.9 bits;  conditional E-value: 0.00038
   TIGR03931   2 lavalavVivagvaaalvvvg..egaatgdtgkakeresetaeasaeseepapptpktge 59 
                 l++a+++ ++a va+ lv  +  e ++ ++ +  + ++s+t e s ++++p+++ +++++
  MMETSP1137-20121227|6634_1 792 LVLAIVAMVIAFVAVLLV--QtrEPRPIASMSTRDRKKSHTIEVSRAEANPTRTDNIEPD 849
                 233333333444444444..35588999999999999*************9999887665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (966 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       218  (0.0531448); expected 82.0 (0.02)
Passed bias filter:                      156  (0.0380302); expected 82.0 (0.02)
Passed Vit filter:                        21  (0.00511945); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.77u 0.15s 00:00:00.92 Elapsed: 00:00:00.73
# Mc/sec: 1746.60
//
Query:       MMETSP1137-20121227|6635_1  [L=914]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      4e-60  201.6  28.9    3.7e-57  191.8   0.1    3.1  3  TIGR02350 prok_dnaK: chaperone protein DnaK
    2.5e-49  166.1  16.6    6.1e-47  158.2   0.1    2.3  2  TIGR01991 HscA: Fe-S protein assembly chaperone HscA
  ------ inclusion threshold ------
        8.2    2.8   8.9         14    2.1   6.1    1.3  1  TIGR00437 feoB: ferrous iron transport protein B


Domain annotation for each model (and alignments):
>> TIGR02350  prok_dnaK: chaperone protein DnaK
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  191.8   0.1   2.7e-60   3.7e-57       2     392 ..       5     416 ..       4     420 .. 0.89
   2 !   10.8  10.4   1.8e-05     0.024     458     588 ..     518     642 ..     497     651 .. 0.64
   3 !    6.6   3.1   0.00033      0.45     483     586 ..     640     746 ..     628     756 .. 0.81

  Alignments for each domain:
  == domain 1    score: 191.8 bits;  conditional E-value: 2.7e-60
   TIGR02350   2 iiGidLGttnsvvavleggepvvianae.GarttPsvvafkkdgerlvGelakrqavtnpentivsikrliGrkle..eveeeak.kvpykvveaen.evkv.ev.edkeytpeeisaeiLqklkkdaeaylGekvteavitvPayfndaqrqatkdaGkiaGlevlriinePtaaaLayGldke.....kkdekilvfdlGGGtfdvsilelg.........dgvfevkstaGdtkLGGddfdekiidylaeefkkee..gidLskdkmalqrlkeaaekakieLssaleteinlpfitadasgpkhlelkltrakfeelvedlvertkepvkkalkdaklsaseidevilvGGstriPavqelvkelvgkepnksvnPdevvaiGaaiqggvlkge..vkdvlLldvtPLsLgi 392
                 +iGid+G     + v++ g+   +a +e  +r   s  +f++++er+ G  + +     p + +v  k l+G++++  ev++ a+   pyk ve  + +++v +  e+ +   ee+ a +L++ k+ ae +    +++avitvP ++  ++r+a   a +ia l+vl ++ + ta a+ yG+dke     +k ++++ +d+G   +  s++ ++          g++ v++ a d +LGG dfd+ ++d l++ef ++     d +    a+ +l+++ae+ k  Ls++++ ++ +  +  d    ++l++ + ra fe+ ++ l+ r ++p+++ ++ a++s+se+d+v +vGGstriP+v+e+  e++g +++ s+n de+ a+Ga + ++ l+    ++d  + d  P ++++
  MMETSP1137-20121227|6635_1   5 VIGIDFGSRFMKIGVIQPGKGIELALNEaSKRKSSSAAGFNNQDERVYGXESFNLLGKLPAKQFVMSKLLLGKNVSsdEVRSFAQyGYPYKFVEDADtKAAVlQYsENTTIRGEEMVAYVLSYAKQIAEGHAKTAIKDAVITVPPFWRATERRAMLSAASIAQLNVLSLMHDSTAFAFKYGFDKEsefspDKPTNVVFYDIGASSLKASLVSFSttvgkknktTGAMAVRAVAWDETLGGRDFDQIVLDMLSDEFVAKYpkVGDPRASFRAMGKLRKEAERVKEVLSANQQFQVAIEGLHED----RDLRMVIKRADFEARAAALFPRLRAPLERLMAMANMSVSEVDKVEIVGGSTRIPKVKETATEFFGMRTSASINADEAAALGATLYAAKLSTSfrLRDFAITDAYPHAIAV 416
                 8******************99877766615688889999*********************************99875577765441689**9998775444414314566789***********************************************************************84444446789***************98875555665555799****************************88764255999999*************************99877666....579**************************************************************************************998668899999999987776 PP

  == domain 2    score: 10.8 bits;  conditional E-value: 1.8e-05
   TIGR02350 458 rGvpqievtfdidanGilsvsakdkatgkeqsititassglseeeiermvkeaeanaeedkkkkeevearne..adsliyqaektlkeagdkleeeekekiekaveelkealkeedveekikakteelekale 588
                  G+p++ vtf++ + G+++vs  + a + +++++ t+   l+eee      ea+++ae+++k k e+e + +  a++ + +  +  ke g++ e+e+ ek++++ +++ ++ + +     + +++++++ a+ 
  MMETSP1137-20121227|6635_1 518 LGKPKVSVTFSLTSSGLMEVSKAEVALEMSEAVEETEVVPLTEEEN--AEAEAKEKAEAEEKAKAEAEEKAKteAEEKAKAEAEGXKEXGKESEKES-EKANATAANVTRTKTVK-----VTKQQKRMHYATL 642
                 59*****************************999999999998875..5567777777777766666655540045555555555555555443333.34444444443322222.....3333333333333 PP

  == domain 3    score: 6.6 bits;  conditional E-value: 0.00033
   TIGR02350 483 atgkeqsititassglseeeiermvkeaeanaeedkkkkeevearneadsliyqaektlkeag..dkle.eeekekiekaveelkealkeedveekikakteeleka 586
                 at k ++ +++a s l+ + i+  v   +a  e++  ++ ++ea+n+++++i  +++++++++  +k++ e+e++ +++++ ++++ + ee v+e+ ++ + +l++ 
  MMETSP1137-20121227|6635_1 640 ATLKVSETSMSAVSPLNATHIDAAVAANKALLEAEALRRLNAEAKNKLEAFIIDTRDKISSEEifEKVStETERDDLREQLGAMEDWIYEEGVAEEAATYKLKLNQL 746
                 5777788899999********************************************99765433676515678999********9999999988755544444443 PP

>> TIGR01991  HscA: Fe-S protein assembly chaperone HscA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  158.2   0.1   4.4e-50   6.1e-47       2     381 ..       6     414 ..       5     419 .. 0.85
   2 !   10.6   7.9   2.2e-05     0.031     446     596 ..     514     667 ..     503     712 .. 0.80

  Alignments for each domain:
  == domain 1    score: 158.2 bits;  conditional E-value: 4.4e-50
   TIGR01991   2 vGiDlGttnslvaavregkaevlkdeeg.rvllpsvvryleegkvevGkeakeaaaedpkntiisvkRlmGr..sledvkkeae.elpyeledakg.emvrlktaqg.evtPvevsaeiLkklkkraeealgkelkgavitvPAYFddaqrqatkdAarlaglnvlRLlnePtaAAvAYGldk......aseglyavYDLGGGtFDvsiLkl.........ekGvFevlatgGdsaLGGDDfDralaklilkkagle......aelskeekkellkaaraakeaLtdaeevevevkl..egkdlkaklsreeleelieelvkktleivrralrdaglkveeikevvlvGGstrvplvrqavaelFkkepltdldPdevvAlGAalqadlLaknkrkedllLlDviPLsL 381
                 +GiD+G     + +++ gk + l  +e+ +    s+  ++++++  +G e  +   + p +  +  k l+G+  s ++v++ a+   py+++++ + +   l+ +++ ++   e+ a +L+  k+ ae + ++++k avitvP ++   +r+a+  Aa +a+lnvl L+ + ta A  YG+dk       + + ++ YD+G      s++ +         + G   v a + d  LGG DfD+ + +++ ++  ++       + s   + +l k+a+++ke L+++++ +v+++   e++dl++ ++r+++e+ +++l  +  ++ +r++  a+++v+e+++v +vGGstr+p+v+++ +e+F+ +  ++++ de  AlGA+l a  L+   r  d  + D+ P ++
  MMETSP1137-20121227|6635_1   6 IGIDFGSRFMKIGVIQPGKGIELALNEAsKRKSSSAAGFNNQDERVYGXESFNLLGKLPAKQFVMSKLLLGKnvSSDEVRSFAQyGYPYKFVEDADtKAAVLQYSENtTIRGEEMVAYVLSYAKQIAEGHAKTAIKDAVITVPPFWRATERRAMLSAASIAQLNVLSLMHDSTAFAFKYGFDKesefspDKPTNVVFYDIGASSLKASLVSFsttvgkknkTTGAMAVRAVAWDETLGGRDFDQIVLDMLSDEFVAKypkvgdPRASFRAMGKLRKEAERVKEVLSANQQFQVAIEGlhEDRDLRMVIKRADFEARAAALFPRLRAPLERLMAMANMSVSEVDKVEIVGGSTRIPKVKETATEFFGMRTSASINADEAAALGATLYAAKLSTSFRLRDFAITDAYPHAI 414
                 8**************9999887776655155589999**********************************94445677665441579***7766514555666555578889**********************************************************************6655555558899*******999999887222222222357889999999************99999855444321111124444556678899*************9999985568899***************************************************************************************9998888888888888665 PP

  == domain 2    score: 10.6 bits;  conditional E-value: 2.2e-05
   TIGR01991 446 pmaA.GaarirvtfqvDadGllsvsaqekltgveakievkpsygLsdeeiekmlkdslknaeeDmeaRalaekkveaerilealekalkadkdLlseeelka...ikaaleklekaleeddaeaikaaiealeeaskefaarrmdkaikkalagk 596
                 + +A G  ++ vtf++   Gl++vs  e   ++ + +e  + + L++ee ++  ++   +aee ++a a + +k eae   +a  +  k+ ++   e+e ++    +a++++ +++  ++++++++ a+ +++e+s + ++    ++i++a+a +
  MMETSP1137-20121227|6635_1 514 SRTAlGKPKVSVTFSLTSSGLMEVSKAEVALEMSEAVEETEVVPLTEEENAEAEAKEKAEAEEKAKAEAEEKAKTEAEEKAKAEAEGXKEXGKES-EKESEKanaTAANVTRTKTVKVTKQQKRMHYATLKVSETSMSAVSPLNATHIDAAVAAN 667
                 44444999****************************************99998777777777777777777888899988888888777766543.33333300034445555566667888899999999999998888877777777777655 PP

>> TIGR00437  feoB: ferrous iron transport protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   6.1    0.0099        14     154     260 ..     544     651 ..     516     699 .. 0.66

  Alignments for each domain:
  == domain 1    score: 2.1 bits;  conditional E-value: 0.0099
   TIGR00437 154 kaiklvekkkraieilkeaeslaevkeklkelkqkl.kkglevleglleeraleiekiekelaevvkkesesklsateiadeekvlveksigtkvldrflglliilsv 260
                  + +   ++++++++++e +  ae+kek++  ++   + ++++ ++  e+  +e+e  ++  +e+ k +++ +++a+++++ ++v+v k+ ++     + +  +++s 
  MMETSP1137-20121227|6635_1 544 LEMSEAVEETEVVPLTEEENAEAEAKEKAEAEEKAKaEAEEKAKTEAEEKAKAEAEGXKEXGKESEKESEKANATAANVTRTKTVKVTKQQKRMHYATLKVSETSMSA 651
                 334444556678888888888888888777776666344444445555555566777777778888888888999999999998888888777655555555555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (914 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       363  (0.0884934); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.74u 0.19s 00:00:00.93 Elapsed: 00:00:01.34
# Mc/sec: 900.28
//
Query:       MMETSP1137-20121227|6636_1  [L=447]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-39  133.9   0.0    1.8e-39  133.5   0.0    1.1  1  TIGR03588 PseC: UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase
    6.6e-36  121.7   0.0      6e-35  118.6   0.0    2.0  1  TIGR04181 NHT_00031: aminotransferase, LLPSF_NHT_00031 family
    1.1e-22   78.2   0.0    1.5e-22   77.7   0.0    1.1  1  TIGR02379 ECA_wecE: TDP-4-keto-6-deoxy-D-glucose transaminase
    9.2e-06   22.7   0.0    1.3e-05   22.3   0.0    1.1  1  TIGR01977 am_tr_V_EF2568: cysteine desulfurase family protein
    0.00011   18.9   0.0    0.00016   18.4   0.0    1.2  1  TIGR00858 bioF: 8-amino-7-oxononanoate synthase
     0.0082   12.8   0.1      0.017   11.8   0.0    1.5  2  TIGR01979 sufS: cysteine desulfurase, SufS family
  ------ inclusion threshold ------
       0.02   11.7   0.0      0.031   11.1   0.0    1.2  1  TIGR02539 SepCysS: Sep-tRNA:Cys-tRNA synthase
      0.048   10.1   0.0      0.062    9.8   0.0    1.2  1  TIGR01825 gly_Cac_T_rel: putative pyridoxal phosphate-dependent acyltransferase


Domain annotation for each model (and alignments):
>> TIGR03588  PseC: UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  133.5   0.0   3.5e-42   1.8e-39      32     279 ..      97     336 ..      67     376 .. 0.87

  Alignments for each domain:
  == domain 1    score: 133.5 bits;  conditional E-value: 3.5e-42
   TIGR03588  32 veafEealaeavgakyavavnsaTsaLh.lavlalgvkegdevlttpitFvAtancalyaGakvvfvdvdkkdgnldekalekklaaaekkkikvivpVdfaGksvdleaiaalakkhglklieDasHalGaeykgkkvGkcryaditvfSFHpvKiittaEGGavttndeelaerlkllrsHgitkdseklekqeeglwyyevqelGfNyRlsdiqaALglsqlkkldefvekRreiaalYdealkel 279
                 ++  E+ ++e++g ky+v +ns  saL+ +a+  +gv++gdevl+ + +F A   ++ +aGa++v+v+   + + +++ +l ++++     k+k ++  +++Gk +d++a+ +la++h +++ieD++HalG + +g+++G+   a ++ +S  + K i ++EGG + t+d+e+a+r+      g   +  k++ +++   + + q+  +  R+sd++aA    q++ l++ v+  +e  a+ +++l   
  MMETSP1137-20121227|6636_1  97 TSLAEAEICEYTGFKYSVGFNSCGSALFxIALKCAGVQPGDEVLANAFSFTAVPSAIHHAGATPVYVES-TRGYTMCAADLRERIT----PKTKFLMLTHMRGKVADMQAVYDLAREHDITVIEDCAHALGIQWDGMQLGR--QATVACYSTQSAKVINSGEGGFLCTDDAEIAARAACYA--GCYEELYKQHXPAAVFEKVKRQTPNYSLRMSDLAAACVRPQIATLEARVAAYNERYARVAAKLDAC 336
                 3456999********************94566789*********************************8.999************9....789************************************************..9********************************99986..7777776666656656667888889999********************999888777766666655 PP

>> TIGR04181  NHT_00031: aminotransferase, LLPSF_NHT_00031 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  118.6   0.0   1.2e-37     6e-35      36     289 ..     101     346 ..      97     381 .. 0.81

  Alignments for each domain:
  == domain 1    score: 118.6 bits;  conditional E-value: 1.2e-37
   TIGR04181  36 EeklaeytgakkavavvnGtaaL.hlalkllgvkegdeVivpaltFvAtanaisylgaePvfvdvdeetlgldpealeefleeeaekkegklinketgrrikavvpvHvfGnpadleeileiakeynlklvEDaaesLGslykgkhtGtfgklgvlSFNgNKiiTtggGGaivtndeelakrakhlstt....Akkphel....efeHdevgyNyRlpnlnAalgvaqlekleeflekKrelaeaYkellkelegvelleepe 289
                 E +++eytg k++v  ++  +aL  +alk +gv++gdeV+ +a++F A   ai+++ga+Pv+v++  + ++++++ l+e+++ ++                k ++ +H+ G+ ad++++ ++a+e++++++ED+a +LG  ++g ++G  ++++++S  + K+i +g GG + t+d+e+a+ra   +       k++ +     + + +   y  R+++l Aa    q+ +le ++++  e +++ +  l+ +e +el e+++
  MMETSP1137-20121227|6636_1 101 EAEICEYTGFKYSVGFNSCGSALfXIALKCAGVQPGDEVLANAFSFTAVPSAIHHAGATPVYVEST-RGYTMCAADLRERITPKT----------------KFLMLTHMRGKVADMQAVYDLAREHDITVIEDCAHALGIQWDGMQLGRQATVACYSTQSAKVINSGEGGFLCTDDAEIAARAACYAGCyeelYKQHXPAavfeKVKRQTPNYSLRMSDLAAACVRPQIATLEARVAAYNERYARVAAKLDACEWLELPEQSP 346
                 899*************9977666379**************************************99.99**********999955................789*****************************************************************************99765433111134433321111234566789***********************987665555555555555555544444 PP

>> TIGR02379  ECA_wecE: TDP-4-keto-6-deoxy-D-glucose transaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.7   0.0   2.9e-25   1.5e-22      44     281 ..     108     343 ..      96     376 .. 0.84

  Alignments for each domain:
  == domain 1    score: 77.7 bits;  conditional E-value: 2.9e-25
   TIGR02379  44 lgakkalltpsctaalelaall.ldiqeGdevimpsytfvstanafvlrGakivfvd.iredtlnidekkieaaitertkaivpvhyaGvacdmdtimalankyelfviedaaqGlmstykgralGsiGhlgafsfhetknytsGgeGGallindkalieraeiirekGtdr.skff.rGevdkytwrdiGssylpselqaaylyaqleeaerineerlaswq.syldalkpleekgilelps 281
                 +g k ++  +sc +al   al    +q+Gdev+  +++f +   a    Ga  v+v+  r  t+      +   it +tk ++  h  G   dm+++  la+++++ vied a  l  +++g  lG    ++++s   +k + sG eGG l  +d ++  ra        +   +       +k   +    s+ +s+l aa +  q+       e r+a ++ +y    ++l++ + lelp+
  MMETSP1137-20121227|6636_1 108 TGFKYSVGFNSCGSALFXIALKcAGVQPGDEVLANAFSFTAVPSAIHHAGATPVYVEsTRGYTMCA--ADLRERITPKTKFLMLTHMRGKVADMQAVYDLAREHDITVIEDCAHALGIQWDGMQLGRQATVACYSTQSAKVINSG-EGGFLCTDDAEIAARAACYAGCYEELyKQHXpAAVFEKVKRQTPNYSLRMSDLAAACVRPQIATL----EARVAAYNeRYARVAAKLDACEWLELPE 343
                 5666677779*****9888885268*******************************8346667764..567789******************************************************************99999.****************9876554443123330344577777777889999999999999998754....4577776525777788888888888885 PP

>> TIGR01977  am_tr_V_EF2568: cysteine desulfurase family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.3   0.0   2.4e-08   1.3e-05      75     229 ..     124     273 ..     102     307 .. 0.81

  Alignments for each domain:
  == domain 1    score: 22.3 bits;  conditional E-value: 2.4e-08
   TIGR01977  75 lNialkG.ilkegkhvittslEHnaVlRpleklkeelgvevtivkaeeeglvdvekikkaikkdtklivlshaSNvtGtilpieeiaelakekgilflvDaaqtaGvleidveklaidllaftGHK.gLlgpqGiggllikekiklkpllsGGtGsn 229
                 + ialk   ++ g++v+  ++   aV   +++   +      +v++++ +++   +++++i+ +tk ++l+h   + G + +++ +  la+e++i+++ D a  +G+    ++  + +++a+   + + +  +G gg+l +++ ++    +   G +
  MMETSP1137-20121227|6636_1 124 FXIALKCaGVQPGDEVLANAFSFTAVPSAIHHAGAT----PVYVESTRGYTMCAADLRERITPKTKFLMLTH---MRGKVADMQAVYDLAREHDITVIEDCAHALGIQWDGMQLGRQATVACYSTQsAKVINSGEGGFLCTDDAEIAARAACYAGCY 273
                 456777656889999999999999999888876555....679999**************************...58*****************************999999998888888766551567889********9999876555555555 PP

>> TIGR00858  bioF: 8-amino-7-oxononanoate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.0     3e-07   0.00016      65     199 ..      94     227 ..      77     262 .. 0.82

  Alignments for each domain:
  == domain 1    score: 18.4 bits;  conditional E-value: 3e-07
   TIGR00858  65 sklheelEeelaefkgteaallfssGyla..NlgvisalvekedlvlsDklnHAslidgarLskakvlry.kHndvealerlLekerg.errklivtdgvFSmDGdvaplkelvalaeryealllvDdAHgtGvlGedG 199
                  +  +  E+e++e++g + ++ f+s   a   +++  a v+ +d vl+ +++  ++  +++ ++a+ +   + + ++  ++ L+++ + +++ l++t     m G va+++++  la++++  ++ D AH++G+  + G
  MMETSP1137-20121227|6636_1  94 LSETSLAEAEICEYTGFKYSVGFNSCGSAlfXIALKCAGVQPGDEVLANAFSFTAVPSAIHHAGATPVYVeSTRGYTMCAADLRERITpKTKFLMLTH----MRGKVADMQAVYDLAREHDITVIEDCAHALGIQWD-G 227
                 5556667999*************998887224566678889***********************996655156678999999*999996777777775....*******************************8655.4 PP

>> TIGR01979  sufS: cysteine desulfurase, SufS family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.8   0.0   3.3e-05     0.017     128     200 ..     152     221 ..     119     236 .. 0.85
   2 ?   -3.0   0.0       1.1   5.5e+02      12      49 ..     291     329 ..     286     331 .. 0.78

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 3.3e-05
   TIGR01979 128 lakrkgaklkvieldedgtldleeleelltektklvaithvsNvlGtvnpveeiiklahevgalvlvDgaqav 200
                 + ++ ga+  ++e ++  t+   +l+e +t ktk++ +th+    G v +++ + +la+e++++v+ D a a+
  MMETSP1137-20121227|6636_1 152 AIHHAGATPVYVESTRGYTMCAADLRERITPKTKFLMLTHM---RGKVADMQAVYDLAREHDITVIEDCAHAL 221
                 456778888999999999999*******************8...6*********************9999875 PP

  == domain 2    score: -3.0 bits;  conditional E-value: 1.1
   TIGR01979  12 rkvngkplvYLDsaatsqkPk.aVidaveeyyeksnanv 49 
                 r++ + +l   D aa+  +P+ a ++a    y++ +a v
  MMETSP1137-20121227|6636_1 291 RQTPNYSLRMSDLAAACVRPQiATLEARVAAYNERYARV 329
                 555566777789999999999557999999999999987 PP

>> TIGR02539  SepCysS: Sep-tRNA:Cys-tRNA synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   6.1e-05     0.031     122     188 ..     159     222 ..     142     247 .. 0.87

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 6.1e-05
   TIGR02539 122 speykvkleeykevieevedesgkevalallthvdgeyGnladakkvakvcrkkgvplllncaytvG 188
                  p y  ++ +y+    ++ ++   ++++ +lth+    G +ad + v +++r++++ ++ +ca+++G
  MMETSP1137-20121227|6636_1 159 TPVYVESTRGYTMCAADLRERITPKTKFLMLTHMR---GKVADMQAVYDLAREHDITVIEDCAHALG 222
                 5888888999***********999*********96...6799**********************999 PP

>> TIGR01825  gly_Cac_T_rel: putative pyridoxal phosphate-dependent acyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.0   0.00012     0.062     174     207 ..     191     224 ..     112     251 .. 0.84

  Alignments for each domain:
  == domain 1    score: 9.8 bits;  conditional E-value: 0.00012
   TIGR01825 174 smdGdvaplpeivelaekydalvyvddahgsGvl 207
                  m G+va ++ + +la+++d+ v+ d ah+ G+ 
  MMETSP1137-20121227|6636_1 191 HMRGKVADMQAVYDLAREHDITVIEDCAHALGIQ 224
                 599***************************9985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (447 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       126  (0.0307167); expected 82.0 (0.02)
Passed bias filter:                      116  (0.0282789); expected 82.0 (0.02)
Passed Vit filter:                        20  (0.00487567); expected 4.1 (0.001)
Passed Fwd filter:                         8  (0.00195027); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.43u 0.15s 00:00:00.57 Elapsed: 00:00:00.57
# Mc/sec: 1017.23
//
Query:       MMETSP1137-20121227|6637_1  [L=264]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (264 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        85  (0.0207216); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.12s 00:00:00.34 Elapsed: 00:00:00.52
# Mc/sec: 670.10
//
Query:       MMETSP1137-20121227|6638_1  [L=540]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.4e-16   55.4   0.8    8.8e-15   51.4   0.1    2.3  2  TIGR03903 TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
    7.4e-08   29.9   0.1    1.3e-07   29.1   0.1    1.4  1  TIGR03724 arch_bud32: Kae1-associated kinase Bud32


Domain annotation for each model (and alignments):
>> TIGR03903  TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.4   0.1   4.3e-18   8.8e-15       2     135 ..      53     185 ..      52     204 .. 0.84
   2 !    2.1   0.0    0.0034       6.9     147     183 ..     238     274 ..     229     287 .. 0.87

  Alignments for each domain:
  == domain 1    score: 51.4 bits;  conditional E-value: 4.3e-18
   TIGR03903   2 tghkvaikllRedaaeeerlvaRFrReialCarLshPnivaL...l..DsGeaedgllFavFeyveGrtlrevLaadGaLpaaetgrLmlqvLDalaaahdaGvvhRDLkPqnimvsaadveshakvLDFGigaLlpgv 135
                 tg+ vaik + e    +++  ++  Rei l     hP+i++L   +  Ds e+ +  +F v ++++   lr +++++  +p       m+q+L ala+ h    +hRDLkP ni++s +++    k+ DFG++  ++ +
  MMETSP1137-20121227|6638_1  53 TGETVAIKRIAEV-FYDAHEAKKVLREIRLLRDFCHPHIIHLralIypDSIETFE-DMFMVTDFMQT-DLRRRIKSKVEMPESMVQGYMAQMLAALAHVHMLRGIHRDLKPANILISSSGQ---LKLCDFGLARTVSAT 185
                 8999****88776.699***********************874433668888877.589*****985.79******************************99889*************996...5899***97555443 PP

  == domain 2    score: 2.1 bits;  conditional E-value: 0.0034
   TIGR03903 147 tevlGsPaYaaPeqLRgepvtaksDlYaWGLivleCL 183
                 t ++ +  Y aPe +  ep  ++ D+++ G i+ e L
  MMETSP1137-20121227|6638_1 238 TKYVVTRWYRAPEVILQEPYSSAIDIWSVGCIFKELL 274
                 67888999************************98765 PP

>> TIGR03724  arch_bud32: Kae1-associated kinase Bud32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.1   0.1   6.4e-11   1.3e-07       4     185 ..      39     228 ..      36     231 .. 0.79

  Alignments for each domain:
  == domain 1    score: 29.1 bits;  conditional E-value: 6.4e-11
   TIGR03724   4 kGAEaeiylge..flglkavvKeRvkKsYrhpelDeklrkeRtrkEarllseakkagvntPvvydvdpeekkivmeyiegkklkdlleekel.......ellkevGelvgklHkagivhgDlttsNiiv.kddklyliDfGLgkkskevedkavDlhvlkrslestheelaeelieaflegYkeeveeekav 185
                 +GA +++  ++   +g+ + +K+  +  Y  +e  + lr+ R  + +     ++   +  P  ++  ++    ++    +++l+  +++k +        ++ ++  +++++H  + +h Dl ++Ni++ ++++l l DfGL+++ +    +a +    +++  +  +e  +++i+a +eg +e+v e+kav
  MMETSP1137-20121227|6638_1  39 QGAYSIVASAKdkLTGETVAIKRIAEVFYDAHEAKKVLREIRLLRDFCHPHIIHLRALIYPDSIETFED--MFMVTDFMQTDLRRRIKSKVEmpesmvqGYMAQMLAALAHVHMLRGIHRDLKPANILIsSSGQLKLCDFGLARTVSATDPEASEPDRAREARAGSEYENDDDVIKATAEGVAETVAEKKAV 228
                 677777765444477777777777777777788888888888888888777777777777776666655..45555556666666666655456667778999999999******************9956899********************999999999999999999******99999999998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (540 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       187  (0.0455875); expected 82.0 (0.02)
Passed bias filter:                       99  (0.0241346); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.18s 00:00:00.58 Elapsed: 00:00:00.71
# Mc/sec: 1003.86
//
Query:       MMETSP1137-20121227|6639_1  [L=486]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.5e-45  153.3   0.7    1.9e-45  153.1   0.5    1.1  1  TIGR03207 cyc_hxne_CoA_dh: cyclohexanecarboxyl-CoA dehydrogenase
    3.7e-23   80.0   0.2    4.8e-23   79.7   0.1    1.1  1  TIGR03203 pimD_small: pimeloyl-CoA dehydrogenase, small subunit
    3.1e-17   60.4   0.0    3.8e-17   60.1   0.0    1.1  1  TIGR03204 pimC_large: pimeloyl-CoA dehydrogenase, large subunit
    3.5e-15   53.6   0.0    8.6e-15   52.3   0.0    1.6  1  TIGR04022 sulfur_SfnB: sulfur acquisition oxidoreductase, SfnB family


Domain annotation for each model (and alignments):
>> TIGR03207  cyc_hxne_CoA_dh: cyclohexanecarboxyl-CoA dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  153.1   0.5   1.8e-48   1.9e-45       3     370 ..      99     478 ..      97     480 .. 0.89

  Alignments for each domain:
  == domain 1    score: 153.1 bits;  conditional E-value: 1.8e-48
   TIGR03207   3 edlqalaekarrfaaerlapgfkerdktrvldrellrdmgelgflgpelseeygglgvgclaagvlleeiarad..lsvsyvnllaslngqilaqharpeiakewlakliageallaialteprggsdaarlrlrierdgd.dyvlngektsi.....saadqadaavvfart.gsveegargisallvpmdlpgitrn.rf.dcigqraigrgsiffedvrvsadhllgdegkgfvqvmqgfdfsraliglqvlavaraaldetweyvaereafgkklsafqgvsfpladletqveaarllclrtl.wlkdhglphtseaamckwwapklaydvihqcllshghggydrg.dleqrlrdvlglqigdgtaqimktiiare 370
                 e+ +al +  + f a+ + p   e +++++++  l++  gelg+lg  ++e+ygg g+++ aa +++ee++++d  + +sy+   + l  + la+ +  e +k+wl    +ge +  + ++ep +g+d   ++  + r+ d +yvlng k  i     s ++  da +v+art g + + ++ +s +lv   +pg +   r+    g ra     +  ++v v+a+ l+g+eg   v +m+ ++  r ++    +++ar +l+    y +er afgk+l +f  +   +ad  + + a +    +t   l+ + +    ++   k ++  +  +v  + + + g  gy  + ++e+ +rd   l+ig gt +  +  +are
  MMETSP1137-20121227|6639_1  99 EEHRALRQLVQSFVAQEVEPQALEYNRAEKFNHPLFQRAGELGLLGVTVNEQYGGAGMDATAACIVHEELSYSDpaFCLSYLAH-SQLFVNNLARNGSLEQCKKWLPAACSGEMIGGMGMSEPAAGTDVLGMKSTAARQADgSYVLNGAKMWItngavSDSQLGDAFLVYARTaGPEVKPSQAVSLFLVEKGMPGFALGqRLkHKCGMRASPTAELVXDNVAVPAENLVGKEGGATVCMMRNLEIERVVLAAMAVGIARRSLQVMNSYATERVAFGKPLRDFGQIQRHIADSYAEYMAGKTYLYQTAqSLNLDAAGNRLDTDGVKLYCTTMGKNVADRAMQVLGGYGYMGDyVVERLWRDAKLLEIGGGTLESHQKNMARE 478
                 78899********************************************************************95566777654.56888999********************************************998758******9866111114555678999****9455667899*************874313314569********************************************************************************************9988776414666667777888889*************************997788889************99888777776 PP

>> TIGR03203  pimD_small: pimeloyl-CoA dehydrogenase, small subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.7   0.1   4.7e-26   4.8e-23       2     373 ..      95     476 ..      94     481 .. 0.86

  Alignments for each domain:
  == domain 1    score: 79.7 bits;  conditional E-value: 4.7e-26
   TIGR03203   2 fdlseeqrllkesvegllkdsydfdsrkkyakekggwskavwgklaeqgllglpfseadggfgagavetmivmealgka..lvlepylatvvigggflrragsaaqkaaylpgiidgsktlafaqleknsrydlgdvsttakkkgd.gwvidgekfvvlngeaa.....dtlivtartkgar.rdrtgigvflvpadakgvtk.kgyptqdglha...aditltgvevgadaaigdpenaleliervvddarvalcaeavglmdeslkttveyiktrkqfgvaigsfqvlqhraadmfvaveqarsmalfatm.aadfddakeranaiaaakvqigkslkfvgqqsiqlhggigmtmeakighyfkrltmiektfgdtdyhlarvs 373
                 fd +ee r l++ v+ ++ +  + ++     +ek  + + ++ +  e gllg+   e+ gg g  a  + iv e l  +       yla   +    l r gs +q   +lp    g     +   e  +  d+  + +ta +++d ++v++g k+ + ng  +     d+++v art g + +  + + +flv  +  g +  +    + g++a   a++    v v a+  +g+   a   + r ++  rv l+a avg+   sl+    y   r  fg ++  f  +q   ad +      ++  l+ t  + ++d a +r ++    k+     +k v ++++q+ gg g   ++ +   ++   ++e   g  + h++ ++
  MMETSP1137-20121227|6639_1  95 FDPTEEHRALRQLVQSFVAQEVEPQALEYNRAEK--FNHPLFQRAGELGLLGVTVNEQYGGAGMDATAACIVHEELSYSdpAFCLSYLAHSQLFVNNLARNGSLEQCKKWLPAACSGEMIGGMGMSEPAAGTDVLGMKSTAARQADgSYVLNGAKMWITNGAVSdsqlgDAFLVYARTAGPEvKPSQAVSLFLVEKGMPGFALgQRLKHKCGMRAsptAELVXDNVAVPAENLVGKEGGATVCMMRNLEIERVVLAAMAVGIARRSLQVMNSYATERVAFGKPLRDFGQIQRHIADSYAEYMAGKT-YLYQTAqSLNLDAAGNRLDT-DGVKLYCTTMGKNVADRAMQVLGGYGYMGDYVVERLWRDAKLLEIGGGTLESHQKNMA 476
                 8999**************9999999988777777..7899***********************************98763356779***********************************************8887777766666269**********99876122225789*******75267899******99888877523455666776633389999*************************************************************************9976655555.56665515688888888775.67899***********************9**999999999999999998888887665 PP

>> TIGR03204  pimC_large: pimeloyl-CoA dehydrogenase, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.1   0.0   3.7e-20   3.8e-17      59     286 ..     147     388 ..      97     443 .. 0.80

  Alignments for each domain:
  == domain 1    score: 60.1 bits;  conditional E-value: 3.7e-20
   TIGR03204  59 wpkqyggtgwtsvqdyifneelqaa.pap..qplafgvsmvgpviytfgneeqkkrflprianvddwwcqgfsepgsgsdlaslktkaekkgd.kyiingqktwttl.....aqhadlifclcrtd.atakkqegisfilvdmkskgitvrp.iqtidg..gsevnevffddvevplenlvgeenkgwdyakfllgnertgia..rvgvskerirrikelaakvesggkpviedakfreklaa 286
                    qygg+g  +    i+ eel    pa   + la    +v   +   g+ eq k++lp  +  +     g+sep +g+d+  +k+ a ++ d  y++ng k w t      +q  d  ++ +rt  +  k  + +s+ lv+    g ++   ++   g  +s   e++ d+v vp enlvg+e          l  er  +a   vg+++  ++ ++  a++  + gkp+ +  +++ ++a 
  MMETSP1137-20121227|6639_1 147 VNEQYGGAGMDATAACIVHEELSYSdPAFclSYLAHSQLFV-NNLARNGSLEQCKKWLPAACSGEMIGGMGMSEPAAGTDVLGMKSTAARQADgSYVLNGAKMWITNgavsdSQLGDAFLVYARTAgPEVKPSQAVSLFLVEKGMPGFALGQrLKHKCGmrASPTAELVXDNVAVPAENLVGKEGGATVCMMRNLEIERVVLAamAVGIARRSLQVMNSYATERVAFGKPLRDFGQIQRHIAD 388
                 4689******************8651443113344444444.556788*************************************9999998857*********986222225778889999999637889999********999998875414443331245689******************9998888889999**9988335899999******************9877777666665 PP

>> TIGR04022  sulfur_SfnB: sulfur acquisition oxidoreductase, SfnB family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.3   0.0   8.3e-18   8.6e-15      16     303 ..     111     419 ..      98     477 .. 0.77

  Alignments for each domain:
  == domain 1    score: 52.3 bits;  conditional E-value: 8.3e-18
   TIGR04022  16 elaaefaeeaaeRDrerrlPveeldafsqsGLwgitvPrayGGaevsaatlaeviaiisaaDpslgqipqnhf.allevlrlegseeqkrfffeevlaGeRfgn.alseag.tknvkelktrlerdgdg.lrldGrkfyst.Gal....fahwipvla......ldeegrevlafvprdapGltviddWs.gfGqrttasGtvlldevrveaeevvpvqkafdrptlag.pvaqliqaaidvGiaraaledtlafvreka...rpwidsg.vekasdDpltiaevgelairleaaeallerageavdaa 303
                  +a+e++++a e +r +++ +   ++  + GL g+tv ++yGGa+++a++   v + +s +Dp+       h   ++++l  +gs eq +++  ++ +Ge +g   +se     +v  +k + +r++dg ++l+G k++ t Ga+    + +   v a      ++ ++   l +v+++ pG+ + +  +   G r+     ++ d+v+v+ae++v  +  ++   + +  +  ++ aa+ vGiar +l+ + ++  e+    +p  d g +++   D ++ +  g+  +  +a +  l+ ag+ +d+ 
  MMETSP1137-20121227|6639_1 111 FVAQEVEPQALEYNRAEKFNHPLFQRAGELGLLGVTVNEQYGGAGMDATAACIVHEELSYSDPAFCLSYLAHSqLFVNNLARNGSLEQCKKWLPAACSGEMIGGmGMSEPAaGTDVLGMKSTAARQADGsYVLNGAKMWITnGAVsdsqLGDAFLVYArtagpeVKPSQAVSLFLVEKGMPGFALGQRLKhKCGMRASPTAELVXDNVAVPAENLVGKEGGATVCMMRNlEIERVVLAAMAVGIARRSLQVMNSYATERVafgKPLRDFGqIQRHIADSYAEYMAGKTYLYQTAQSLNLDAAGNRLDTD 419
                 47899999999999*99*99999****************************************976555555414699***********************97525666431345666666666666655********9875776322223333333311112223344455778**********99875268************************999998777655389********************999998743337999965268899999999999999999888888899999999964 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (486 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       119  (0.0290102); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.39u 0.17s 00:00:00.56 Elapsed: 00:00:00.53
# Mc/sec: 1210.32
//
Query:       MMETSP1137-20121227|6640_1  [L=656]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.2e-66  221.5   0.0    9.2e-66  220.4   0.0    1.5  1  TIGR03719 ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family
    5.8e-38  128.9   0.0    4.4e-15   53.4   0.0    4.0  3  TIGR02857 CydD: thiol reductant ABC exporter, CydD subunit
    8.8e-35  117.9   0.0    3.4e-13   46.6   0.0    3.9  3  TIGR03375 type_I_sec_LssB: type I secretion system ATPase
    1.3e-32  110.9   0.0    7.1e-11   39.7   0.0    4.3  4  TIGR03873 F420-0_ABC_ATP: proposed F420-0 ABC transporter, ATP-binding protein
      5e-32  109.0   0.1    1.5e-09   34.9   0.0    4.2  4  TIGR02868 CydC: thiol reductant ABC exporter, CydC subunit
    7.5e-31  105.4   0.0    2.5e-15   54.6   0.0    4.4  3  TIGR03740 galliderm_ABC: lantibiotic protection ABC transporter, ATP-binding subunit
    4.5e-30  102.7   0.0    2.1e-09   35.2   0.0    4.2  4  TIGR02673 FtsE: cell division ATP-binding protein FtsE
    9.7e-30  101.7   3.6      2e-11   41.5   0.0    4.8  4  TIGR01188 drrA: daunorubicin resistance ABC transporter, ATP-binding protein
      8e-29   98.7   0.0    1.7e-09   35.6   0.0    4.2  4  TIGR00960 3a0501s02: type II secretory pathway family protein
    1.1e-27   94.6   0.0    2.6e-08   31.4   0.0    4.4  4  TIGR01166 cbiO: cobalt ABC transporter, ATP-binding protein
    2.6e-27   93.2   0.0    3.1e-12   43.4   0.0    4.0  4  TIGR00958 3a01208: antigen peptide transporter 2
    1.3e-26   91.3   0.0    3.9e-10   37.4   0.0    4.2  4  TIGR02211 LolD_lipo_ex: lipoprotein releasing system, ATP-binding protein
    2.5e-26   90.3   0.0    1.2e-06   26.0   0.0    4.6  4  TIGR03608 L_ocin_972_ABC: putative bacteriocin export ABC transporter, lactococcin 972 group
    7.8e-26   88.8   0.0    2.3e-08   31.6   0.0    4.2  4  TIGR03864 PQQ_ABC_ATP: ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system
      9e-26   88.3   0.0      2e-08   31.1   0.0    4.3  4  TIGR01842 type_I_sec_PrtD: type I secretion system ATPase
    4.3e-25   86.5   0.0    1.3e-10   39.0   0.0    4.2  4  TIGR02769 nickel_nikE: nickel import ATP-binding protein NikE
    4.5e-25   85.8   0.0    2.6e-08   30.4   0.0    4.1  4  TIGR03796 NHLM_micro_ABC1: NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein
    5.1e-25   86.4   0.0    9.7e-10   36.2   0.0    4.0  3  TIGR03522 GldA_ABC_ATP: gliding motility-associated ABC transporter ATP-binding subunit GldA
      9e-25   85.3   0.0    2.1e-12   44.9   0.0    4.1  3  TIGR01189 ccmA: heme ABC exporter, ATP-binding protein CcmA
    2.9e-24   83.6   0.0    5.6e-07   27.1   0.0    4.2  4  TIGR03410 urea_trans_UrtE: urea ABC transporter, ATP-binding protein UrtE
    3.2e-24   83.5   0.0      3e-12   44.3   0.0    4.4  3  TIGR02315 ABC_phnC: phosphonate ABC transporter, ATP-binding protein
    2.9e-23   80.2   0.0    3.8e-11   40.3   0.0    3.5  3  TIGR01288 nodI: nodulation ABC transporter NodI
    4.9e-23   79.7   0.0    4.4e-08   30.7   0.0    4.2  4  TIGR00968 3a0106s01: sulfate ABC transporter, ATP-binding protein
      5e-23   79.4   0.0    1.9e-12   44.4   0.0    4.0  4  TIGR02204 MsbA_rel: ABC transporter, permease/ATP-binding protein
    6.5e-23   78.9   0.0    3.6e-10   36.8   0.0    4.1  4  TIGR03269 met_CoM_red_A2: methyl coenzyme M reductase system, component A2
    1.9e-22   77.7   0.0    2.7e-06   25.0   0.0    4.2  4  TIGR01277 thiQ: thiamine ABC transporter, ATP-binding protein
    2.1e-22   77.6   0.0    2.2e-09   35.0   0.0    4.4  4  TIGR02982 heterocyst_DevA: ABC exporter ATP-binding subunit, DevA family
    2.3e-22   77.5   0.0    1.1e-08   32.5   0.0    4.5  4  TIGR02142 modC_ABC: molybdate ABC transporter, ATP-binding protein
    3.9e-22   76.7   0.0    1.1e-05   22.9   0.0    4.3  4  TIGR01978 sufC: FeS assembly ATPase SufC
    8.6e-22   75.8   0.0    3.5e-07   28.0   0.0    4.2  4  TIGR03771 anch_rpt_ABC: anchored repeat-type ABC transporter, ATP-binding subunit
      2e-21   74.3   0.0    8.6e-07   26.4   0.0    4.3  4  TIGR00972 3a0107s01c2: phosphate ABC transporter, ATP-binding protein
    5.5e-21   72.8   0.0    6.1e-08   30.1   0.0    4.3  4  TIGR02770 nickel_nikD: nickel import ATP-binding protein NikD
    3.4e-20   69.7   0.0      1e-08   31.8   0.0    4.1  3  TIGR01846 type_I_sec_HlyB: type I secretion system ATPase
    4.8e-20   69.7   0.0    1.8e-08   31.8   0.0    4.2  4  TIGR03005 ectoine_ehuA: ectoine/hydroxyectoine ABC transporter, ATP-binding protein EhuA
    1.4e-19   67.9   0.0    2.1e-07   27.7   0.0    4.1  4  TIGR03797 NHLM_micro_ABC2: NHLM bacteriocin system ABC transporter, ATP-binding protein
      3e-19   67.2   0.0    1.4e-06   25.7   0.0    4.2  4  TIGR02324 CP_lyasePhnL: phosphonate C-P lyase system protein PhnL
    6.4e-19   65.8   0.0    1.6e-06   24.8   0.0    4.2  4  TIGR00955 3a01204: pigment precursor permease
    7.3e-19   66.0   0.0    4.3e-08   30.6   0.0    4.2  4  TIGR03265 PhnT2: putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein
    1.1e-18   65.6   0.0      2e-05   22.2   0.0    4.5  4  TIGR03411 urea_trans_UrtD: urea ABC transporter, ATP-binding protein UrtD
    1.3e-18   64.6   0.0    3.8e-08   30.1   0.0    4.2  4  TIGR02203 MsbA_lipidA: lipid A export permease/ATP-binding protein MsbA
    1.7e-18   64.6   0.0    3.3e-06   24.2   0.0    4.1  4  TIGR03258 PhnT: 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT
    2.8e-17   60.6   0.1    2.4e-08   31.3   0.0    4.9  5  TIGR01187 potA: polyamine ABC transporter, ATP-binding protein
    3.1e-17   60.2   0.0    5.5e-07   26.3   0.0    3.9  4  TIGR01193 bacteriocin_ABC: ABC-type bacteriocin transporter
    2.9e-16   57.2   0.0    2.1e-06   24.8   0.0    4.1  4  TIGR02314 ABC_MetN: D-methionine ABC transporter, ATP-binding protein
    5.1e-16   56.6   0.0    1.4e-05   22.2   0.0    4.2  4  TIGR01186 proV: glycine betaine/L-proline transport ATP binding subunit
    1.3e-15   55.5   0.0    7.9e-07   26.7   0.0    4.5  4  TIGR01184 ntrCD: nitrate ABC transporter, ATP-binding proteins C and D
    4.2e-15   53.0   0.0    9.5e-05   18.8   0.0    4.2  4  TIGR02633 xylG: D-xylose ABC transporter, ATP-binding protein
    8.9e-14   48.6   0.0    0.00012   18.5   0.0    4.2  3  TIGR00954 3a01203: peroxysomal long chain fatty acyl transporter
    2.2e-12   44.8   0.0     0.0042   14.4   0.0    4.2  4  TIGR02323 CP_lyasePhnK: phosphonate C-P lyase system protein PhnK
    2.2e-12   44.2   0.0    1.4e-05   21.7   0.0    3.2  3  TIGR01192 chvA: glucan exporter ATP-binding protein
    3.1e-11   39.3   0.0     0.0002   16.7   0.0    3.5  3  TIGR01271 CFTR_protein: cystic fibrosis transmembrane conductor regulator (CFTR)
    2.2e-07   28.0   5.4    0.00083   16.2   0.0    4.3  4  TIGR03415 ABC_choXWV_ATP: choline ABC transporter, ATP-binding protein
    4.8e-06   22.1   0.0      0.011   10.9   0.0    2.8  3  TIGR00957 MRP_assoc_pro: multi drug resistance-associated protein (MRP)
    2.4e-05   19.1   0.0      0.014   10.0   0.0    2.8  2  TIGR01257 rim_protein: rim ABC transporter
    9.4e-05   19.0   0.0     0.0041   13.5   0.0    2.9  3  TIGR01194 cyc_pep_trnsptr: cyclic peptide transporter
    0.00023   16.7   0.8       0.55    5.5   0.0    3.6  4  TIGR00956 3a01205: pleiotropic drug resistance family protein
     0.0016   15.0   0.0      0.035   10.6   0.0    2.2  2  TIGR02546 III_secr_ATP: type III secretion apparatus H+-transporting two-sector ATPase
     0.0022   15.6   0.0       0.17    9.5   0.0    2.6  2  TIGR00231 small_GTP: small GTP-binding protein domain
     0.0027   14.4   0.0      0.098    9.3   0.0    2.2  2  TIGR03496 FliI_clade1: flagellar protein export ATPase FliI
     0.0062   13.8   0.2      0.033   11.4   0.0    2.2  2  TIGR03015 pepcterm_ATPase: putative secretion ATPase, PEP-CTERM locus subfamily
  ------ inclusion threshold ------
      0.013   13.0   0.4       0.19    9.2   0.0    2.5  2  TIGR02322 phosphon_PhnN: phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN
      0.018   11.0   3.2       0.63    5.9   0.0    4.0  5  TIGR00630 uvra: excinuclease ABC subunit A
      0.083    8.9   5.9       0.67    5.9   0.0    3.0  2  TIGR00929 VirB4_CagE: type IV secretion/conjugal transfer ATPase, VirB4 family


Domain annotation for each model (and alignments):
>> TIGR03719  ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  220.4   0.0   1.4e-67   9.2e-66      18     542 ..     119     647 ..     107     651 .. 0.83

  Alignments for each domain:
  == domain 1    score: 220.4 bits;  conditional E-value: 1.4e-67
   TIGR03719  18 keilkdislsffpgakiGvlGlnGaGkstllkimaGvdkefeGealaaegikvGyleqePkldeektvrenveegvaeikealdrfee.isaklaeedadfdklleeqaklqekidaadawdldskleiamdalrlpeedakveklsGGekrrvalcrlllekPdlllldePtnhldaesvaWlekflkeykGtvvavthdryfldnvaeWileldrG.egipykgnysswleqkekrleqeekeeaarkkalkkeleWvrs....spkarqakskarlaryeelaseesekkeeta...eivippgerlGdkvievenlskafgdk...lliddlsfklpkggivGviGpnGaGkstlfklitgkekpdsGelkiGetvklayvdq.srdalddnktvweeisd....Gldllklgkv..evn.srayvgrfnfkGadqqkkvgelsGGernrvhlakllkeggnvllldePtndldvetlraleeallefaGcavvishdrwfldriathilafegdskveffeGnyeeyeedkkkrlGedaa 542
                 +++++d +l   +g + G++ +nG+Gkstllk +a         + + e i + +l++e +  ++ +  ++v ++v+  ke l+++ee i+ + + ed  ++++ e+  k++ +  ++ a +l   l  + + +     ++  +++sGG + rval++ l+ kP ll+ldePtnhld  +  Wle +l++++  +++  h   fl+ v++ i  l    + + y gny +++  +++   +  k++++++  +k+  +++ s    s+  +qa+sk ++   +++ ++  + k   +     + p++e++   v+ ++n+s a+  k    l+ +l+f +  ++ + ++GpnGaGkstl+kl+ ++ +p +Ge++    ++++  +q s d ld +kt  + + d    G  + + gk+  +v+  ra +g f+ +G  q + +++ls G r r+ +  +  ++  +llldePtn ld++ + +l  a+++f G +v++shd  +l+++a  i  +e ++ + +   + ++y+++ ++++ +d +
  MMETSP1137-20121227|6640_1 119 QQLFEDQTLELTYGHRYGLIAQNGSGKSTLLKCVAAR------MVPIPEFIDIWFLDREAQPSDK-SAVDVVIDTVRLEKERLEKLEEdIMCESGPEDPRLESIYEKLDKMDPSTFEKRAGELLFGLGFSQKMM-----QKATKDMSGGWRMRVALAQALFVKPMLLVLDEPTNHLDLGACVWLEDYLSKWDSILLLTSHSADFLNGVCSKIYHLTVDkRLMLYGGNYDTYVRTRTENEVNLLKRHEKEQEDIKHLKDFISScgtySNLVKQAQSKQKI--IDKMVEAGLTPKPMPDpvfRFTFPSSEKIPPPVLAFQNVSFAYSGKkedYLYTNLEFGIDCDSRIALVGPNGAGKSTLLKLMLQEIEPTEGEIRRNPHLRFGRYNQhSEDVLDLEKTPLDFLRDlfvdGVVTTE-GKKkwDVPeWRAKLGIFGVTGDKQTNLIKTLSPGFRARLVFCLMSLRNPHLLLLDEPTNPLDMDMIDSLALAIKSFNGGVVLVSHDFRLLEQVAENIWVCEHKTITPW-ASDIKAYKKHLRNQMAQDVK 647
                 68899****************************9963......345567799*******997665.55688999999999999999863666666667676766666666665555555555555555555444.....4556779****************************************************************9988876515788**********9999888888888888889999999998722224557888888776..57888877777766551126679********************7653337***************************************************9888725678999**988776552111544433.4441255425*******************************************************************************************9977666.67899999999999888765 PP

>> TIGR02857  CydD: thiol reductant ABC exporter, CydD subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.4   0.0   6.7e-17   4.4e-15     314     518 ..      99     309 ..      44     319 .. 0.67
   2 !   44.7   0.0   2.9e-14   1.9e-12     320     381 ..     413     480 ..     376     509 .. 0.83
   3 !   24.0   0.0   5.8e-08   3.8e-06     458     525 ..     549     614 ..     530     618 .. 0.89

  Alignments for each domain:
  == domain 1    score: 53.4 bits;  conditional E-value: 6.7e-17
   TIGR02857 314 ltaaassslelenvsvayegrkpalkevsltvepgelvalvGaSGaGKstllklllgfvepteGailv.....ngaelaeldadswrkqiawvpQkPllfegtvaenirlar..kdaseaevkealeragldelvkalpq......gleteiGergagLSgGqrqRlaLArallrdapllllDEPtahLDaeteaevlealrelaegrtvllvaHrla 518
                 + +++s+ +++e  s++  g++   ++  l++  g++++l+++ G+GKstllk+++  + p  + i +     +    +  d+++    i  v  +   +e  + e+i   +  +d   + + e l++ +  ++ k +++        ++++ ++ + +SgG r R+aLA+al  +  ll+lDEPt hLD  +   +++ l +     ++ll +H+  
  MMETSP1137-20121227|6640_1  99 ASRKDSRDVKIESFSISLFGQQ-LFEDQTLELTYGHRYGLIAQNGSGKSTLLKCVAARMVPIPEFIDIwfldrE---AQPSDKSAVDVVIDTVRLEKERLE-KLEEDIMCESgpEDPRLESIYEKLDKMDPSTFEKRAGEllfglgFSQKMMQKATKDMSGGWRMRVALAQALFVKPMLLVLDEPTNHLDLGACVWLEDYLSK--WDSILLLTSHSAD 309
                 22334459*************9.9*********************************999*******9885442...444444433333333333322222.2445554333102333344555555555555555444312211034678899999*********************************9998888888887..4567777777765 PP

  == domain 2    score: 44.7 bits;  conditional E-value: 2.9e-14
   TIGR02857 320 s....slelenvsvayegrk..palkevsltvepgelvalvGaSGaGKstllklllgfvepteGailv 381
                 +     l ++nvs+ay g+k     +++++ ++  +++alvG+ GaGKstllkl+l  +epteG+i+ 
  MMETSP1137-20121227|6640_1 413 KipppVLAFQNVSFAYSGKKedYLYTNLEFGIDCDSRIALVGPNGAGKSTLLKLMLQEIEPTEGEIRR 480
                 0444589*********9998755779****************************************84 PP

  == domain 3    score: 24.0 bits;  conditional E-value: 5.8e-08
   TIGR02857 458 gLSgGqrqRlaLArallrdapllllDEPtahLDaeteaevlealrelaegrtvllvaHrlalaeladk 525
                  LS G r Rl    + lr+ +llllDEPt  LD +    +  a++++  g  v+lv+H+  l+e++ +
  MMETSP1137-20121227|6640_1 549 TLSPGFRARLVFCLMSLRNPHLLLLDEPTNPLDMDMIDSLALAIKSFNGG--VVLVSHDFRLLEQVAE 614
                 79*******************************************97655..899****999887654 PP

>> TIGR03375  type_I_sec_LssB: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.6   0.0   5.2e-15   3.4e-13     480     666 ..     119     312 ..      68     331 .. 0.81
   2 !   42.4   0.0   9.5e-14   6.2e-12     466     525 ..     419     479 ..     410     482 .. 0.94
   3 !   23.0   0.0   6.9e-08   4.5e-06     603     677 ..     549     622 ..     544     628 .. 0.84

  Alignments for each domain:
  == domain 1    score: 46.6 bits;  conditional E-value: 5.2e-15
   TIGR03375 480 kaaLknvslkikpGekvaiiGriGsGKstllklllglyepteGsvll..dgvdirqidpadlrrnigyvpqdvtLfyGtlrdNialgap..aaedeellraaelaGvtefvkkhpk.....Gldl.qigerGesLSgGQrqavalaRallkdppillLDEPtsalDnsseekllerLkelladkTlvlvtHrtslLe 666
                 ++  ++++l++  G + ++i ++GsGKstllk ++  + p    + +   + +++  d++ +   i  v  + + +  +l + i++++     + e++ + ++++  ++f k+  +     G+ + +++   + +SgG r  vala al  +p +l+LDEPt++lD  +   l + L+++  d  l+l++H + +L+
  MMETSP1137-20121227|6640_1 119 QQLFEDQTLELTYGHRYGLIAQNGSGKSTLLKCVAARMVPIPEFIDIwfLDREAQPSDKSAVDVVIDTVRLEKERL-EKLEEDIMCESGpeDPRLESIYEKLDKMDPSTFEKRAGEllfglGFSQkMMQKATKDMSGGWRMRVALAQALFVKPMLLVLDEPTNHLDLGACVWLEDYLSKW--DSILLLTSHSADFLN 312
                 56678999**************************999998777655511566677778888888888888777765.5899***98775235666889999999999999999876555447766155667789*******************************************999..678999999998887 PP

  == domain 2    score: 42.4 bits;  conditional E-value: 9.5e-14
   TIGR03375 466 ielknvsfkYpeeekaaL.knvslkikpGekvaiiGriGsGKstllklllglyepteGsvl 525
                 ++++nvsf+Y+++++  L  n+++ i   +++a++G +G+GKstllkl+l+ +epteG++ 
  MMETSP1137-20121227|6640_1 419 LAFQNVSFAYSGKKEDYLyTNLEFGIDCDSRIALVGPNGAGKSTLLKLMLQEIEPTEGEIR 479
                 579********99999884699************************************995 PP

  == domain 3    score: 23.0 bits;  conditional E-value: 6.9e-08
   TIGR03375 603 sLSgGQrqavalaRallkdppillLDEPtsalDnsseekllerLkelladkTlvlvtHrtslLelv.driivldkG 677
                  LS G r  +++  + l++p++llLDEPt+ lD+   ++l  ++k++     +vlv+H   lLe v + i v ++ 
  MMETSP1137-20121227|6640_1 549 TLSPGFRARLVFCLMSLRNPHLLLLDEPTNPLDMDMIDSLALAIKSFNG--GVVLVSHDFRLLEQVaENIWVCEHK 622
                 799******************************9988888888887765..599*********8662556566555 PP

>> TIGR03873  F420-0_ABC_ATP: proposed F420-0 ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0   1.2e-05   0.00081       2      53 ..     107     158 ..     106     184 .. 0.90
   2 !   39.7   0.0   1.1e-12   7.1e-11     129     175 ..     243     289 ..     229     327 .. 0.86
   3 !   23.6   0.0   8.4e-08   5.5e-06      30      59 ..     450     479 ..     432     486 .. 0.89
   4 !   25.4   0.0   2.5e-08   1.6e-06     135     213 ..     547     622 ..     533     632 .. 0.84

  Alignments for each domain:
  == domain 1    score: 16.5 bits;  conditional E-value: 1.2e-05
   TIGR03873   2 lrlsrvsvraggrlivddvdvtaPaGaltgllGPnGsGkstllrllaGllap 53 
                 ++++  s+++ g+ + +d +++   G   gl+  nGsGkstll+ +a  + p
  MMETSP1137-20121227|6640_1 107 VKIESFSISLFGQQLFEDQTLELTYGHRYGLIAQNGSGKSTLLKCVAARMVP 158
                 67899999999*********************************99976655 PP

  == domain 2    score: 39.7 bits;  conditional E-value: 1.1e-12
   TIGR03873 129 sladrdlstlsGGerqrvhlaralaqePklllldePtnhldvsaqle 175
                 ++ +++++ +sGG r rv la+al  +P ll+ldePtnhld+ a + 
  MMETSP1137-20121227|6640_1 243 KMMQKATKDMSGGWRMRVALAQALFVKPMLLVLDEPTNHLDLGACVW 289
                 566788899********************************999765 PP

  == domain 3    score: 23.6 bits;  conditional E-value: 8.4e-08
   TIGR03873  30 tgllGPnGsGkstllrllaGllapdaGevd 59 
                  +l+GPnG+Gkstll+l+   ++p++Ge+ 
  MMETSP1137-20121227|6640_1 450 IALVGPNGAGKSTLLKLMLQEIEPTEGEIR 479
                 589************************985 PP

  == domain 4    score: 25.4 bits;  conditional E-value: 2.5e-08
   TIGR03873 135 lstlsGGerqrvhlaralaqePklllldePtnhldvsaqlellal.vrelaaegvtvvvalhdlnlaasvcdhvvvldgG 213
                 ++tls G r r  +     ++P+lllldePtn ld+   ++ lal +++    +  vv+  hd+ l  +v++++ v ++ 
  MMETSP1137-20121227|6640_1 547 IKTLSPGFRARLVFCLMSLRNPHLLLLDEPTNPLDMDM-IDSLALaIKSF---NGGVVLVSHDFRLLEQVAENIWVCEHK 622
                 68*********99999999****************986.55555515555...55677778************9998875 PP

>> TIGR02868  CydC: thiol reductant ABC exporter, CydC subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.3   3.6e-06   0.00023     296     382 ..      68     153 ..       9     165 .. 0.87
   2 !   34.9   0.0   2.2e-11   1.5e-09     464     506 ..     244     286 ..     232     300 .. 0.87
   3 !   33.8   0.0   4.9e-11   3.2e-09     321     393 ..     407     479 ..     369     485 .. 0.77
   4 !   16.7   0.0   7.2e-06   0.00047     470     529 ..     548     605 ..     542     606 .. 0.82

  Alignments for each domain:
  == domain 1    score: 17.7 bits;  conditional E-value: 3.6e-06
   TIGR02868 296 qltrvraaaeRieevldakvevaeasapaaeaaasekptlelrdlsvsypgaeevlkgvsldlepGervavvGasGaGKstLlalla 382
                 + ++v++aae +++++ +++ ++ a+     a+ +++ +++++  s+s  g++  +++ +l+l+ G+r  ++++ G+GKstLl+ +a
  MMETSP1137-20121227|6640_1  68 KKEEVAEAAEDLDKLTMEEGTHKLAVCTGVLASRKDSRDVKIESFSISLFGQQL-FEDQTLELTYGHRYGLIAQNGSGKSTLLKCVA 153
                 5678999999999999999999999999999999999************99976.9999************************9876 PP

  == domain 2    score: 34.9 bits;  conditional E-value: 2.2e-11
   TIGR02868 464 klgeggarlSGGerqRlalARaLladapvllLDEPtehLDaet 506
                  +++  + +SGG r R+alA aL  +  +l+LDEPt hLD ++
  MMETSP1137-20121227|6640_1 244 MMQKATKDMSGGWRMRVALAQALFVKPMLLVLDEPTNHLDLGA 286
                 46677789********************************876 PP

  == domain 3    score: 33.8 bits;  conditional E-value: 4.9e-11
   TIGR02868 321 sapaaeaaasekptlelrdlsvsypgaee..vlkgvsldlepGervavvGasGaGKstLlallaglldplkGevt 393
                 + p  e+ ++  p l ++++s++y g++e    +++++ +   +r+a+vG+ GaGKstLl+l++  ++p +Ge+ 
  MMETSP1137-20121227|6640_1 407 TFPSSEKIPP--PVLAFQNVSFAYSGKKEdyLYTNLEFGIDCDSRIALVGPNGAGKSTLLKLMLQEIEPTEGEIR 479
                 3444444444..899***********99988889**************************************985 PP

  == domain 4    score: 16.7 bits;  conditional E-value: 7.2e-06
   TIGR02868 470 arlSGGerqRlalARaLladapvllLDEPtehLDaeteeelledLlaaeegrtvvlvthr 529
                 ++lS G r Rl++  + l +  +llLDEPt  LD +  ++l  ++ + +    vvlv+h+
  MMETSP1137-20121227|6640_1 548 KTLSPGFRARLVFCLMSLRNPHLLLLDEPTNPLDMDMIDSLALAIKSFN--GGVVLVSHD 605
                 689*******************************987777654444333..338888886 PP

>> TIGR03740  galliderm_ABC: lantibiotic protection ABC transporter, ATP-binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.3   0.0   9.3e-13   6.1e-11      10     156 ..     116     283 ..     107     306 .. 0.73
   2 ?   -0.9   0.0       3.5   2.3e+02      58      90 ..     348     380 ..     338     392 .. 0.76
   3 !   54.6   0.0   3.9e-17   2.5e-15      14     198 ..     435     620 ..     419     635 .. 0.77

  Alignments for each domain:
  == domain 1    score: 40.3 bits;  conditional E-value: 9.3e-13
   TIGR03740  10 fkkqavvnnvslkvkknsvygllGpnGaGkstllklltGll..rktsGeilldgrewtrkdlkkiGsliesPalyen.l..........tarenlkvrtlllglp.......esrieevlkivdlent.ekkkakqfslGmkqrlGiaiallnkPkllildePtnGld 156
                    q++ ++ +l++   + ygl+  nG+Gkstllk ++  +   ++  +i + +re + +d + + ++i++  l ++ l          +  e+ +++++ ++l+       e+r  e+l  ++++++  +k +k++s G + r+ +a al+ kP ll+ldePtn ld
  MMETSP1137-20121227|6640_1 116 LFGQQLFEDQTLELTYGHRYGLIAQNGSGKSTLLKCVAARMvpIPEFIDIWFLDREAQPSDKSAVDVVIDTVRLEKErLekleedimceSGPEDPRLESIYEKLDkmdpstfEKRAGELLFGLGFSQKmMQKATKDMSGGWRMRVALAQALFVKPMLLVLDEPTNHLD 283
                 5567788889999999********************998661246778999*******************998865413111111111122344455555554441111111235557777777765415677899*******************************9 PP

  == domain 2    score: -0.9 bits;  conditional E-value: 3.5
   TIGR03740  58 lldgrewtrkdlkkiGsliesPalyenltaren 90 
                 ll+ +e  ++d+k++  +i s  +y nl  +  
  MMETSP1137-20121227|6640_1 348 LLKRHEKEQEDIKHLKDFISSCGTYSNLVKQAQ 380
                 46778899999****************976544 PP

  == domain 3    score: 54.6 bits;  conditional E-value: 3.9e-17
   TIGR03740  14 avvnnvslkvkknsvygllGpnGaGkstllklltGllrktsGeilldgr.ewtrkdlkk..iGsliesPalyenltarenlkvrtlllglpesrieevlkivdlentek.kkakqfslGmkqrlGiaiallnkPkllildePtnGldPlGiqelreliksfpekGitvilsshilsevelladhiGiis 198
                  +  n+++ ++ +s  +l+GpnGaGkstllkl+   +++t+Gei  + + ++ r + ++  +  l ++P  + +    + +  +   ++ +  +    l i +++ +++ +  k +s G + rl   +  l++P+ll+ldePtn ld   i+ l   iksf+     v+l sh +  +e++a++i + +
  MMETSP1137-20121227|6640_1 435 YLYTNLEFGIDCDSRIALVGPNGAGKSTLLKLMLQEIEPTEGEIRRNPHlRFGRYNQHSedVLDLEKTPLDFLRDLFVDGVVTTEGKKKWDVPEWRAKLGIFGVTGDKQtNLIKTLSPGFRARLVFCLMSLRNPHLLLLDEPTNPLDMDMIDSLALAIKSFNG---GVVLVSHDFRLLEQVAENIWVCE 620
                 4567888889999999*****************************9988567887766511555555554443333344444333445555556666788888876655145799**********************************************75...47888999999999999997765 PP

>> TIGR02673  FtsE: cell division ATP-binding protein FtsE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.9   0.0    0.0037      0.24      16      54 ..     120     158 ..     108     180 .. 0.86
   2 !   35.2   0.0   3.3e-11   2.1e-09     108     202 ..     221     313 ..     215     325 .. 0.76
   3 !   30.4   0.0   9.8e-10   6.4e-08       2      61 ..     419     480 ..     418     494 .. 0.87
   4 !   23.0   0.0   1.8e-07   1.1e-05     129     209 ..     541     618 ..     517     623 .. 0.86

  Alignments for each domain:
  == domain 1    score: 8.9 bits;  conditional E-value: 0.0037
   TIGR02673  16 eaLkdvslkiekgeflfltGasGaGkttllklllgaekp 54 
                 +  +d +l+++ g+ + l+ + G+Gk+tllk + ++  p
  MMETSP1137-20121227|6640_1 120 QLFEDQTLELTYGHRYGLIAQNGSGKSTLLKCVAARMVP 158
                 567888999999*******************99987766 PP

  == domain 2    score: 35.2 bits;  conditional E-value: 3.3e-11
   TIGR02673 108 gkkeeeiqkrveevlelvgledkakalp.eelsgGeqqRvaiaRaivnkPelllaDePtGnlDdelserildllkelnkrGttvivathdeelver 202
                 +++ ++++kr  e+l  +g+++k+ +++ + +sgG + Rva+a a+  kP ll+ DePt  lD      + d l++       +++++h  ++++ 
  MMETSP1137-20121227|6640_1 221 KMDPSTFEKRAGELLFGLGFSQKMMQKAtKDMSGGWRMRVALAQALFVKPMLLVLDEPTNHLDLGACVWLEDYLSKWD---SILLLTSHSADFLNG 313
                 56678899***************87665278********************************876655544444433...345555566555555 PP

  == domain 3    score: 30.4 bits;  conditional E-value: 9.8e-10
   TIGR02673   2 ielekvskeyaagve..aLkdvslkiekgeflfltGasGaGkttllklllgaekpsrGevev 61 
                 + +++vs++y+++ e    +++++ i+  + + l+G+ GaGk+tllkl+l+  +p++Ge++ 
  MMETSP1137-20121227|6640_1 419 LAFQNVSFAYSGKKEdyLYTNLEFGIDCDSRIALVGPNGAGKSTLLKLMLQEIEPTEGEIRR 480
                 689*******96554225689**************************************985 PP

  == domain 4    score: 23.0 bits;  conditional E-value: 1.8e-07
   TIGR02673 129 dkakalpeelsgGeqqRvaiaRaivnkPelllaDePtGnlDdelserildllkelnkrGttvivathdeelvervkkrvle 209
                 dk+++l ++ls G + R       +++P+lll DePt  lD ++  ++   +k++n     v++++hd +l+e+v++++  
  MMETSP1137-20121227|6640_1 541 DKQTNLIKTLSPGFRARLVFCLMSLRNPHLLLLDEPTNPLDMDMIDSLALAIKSFNG---GVVLVSHDFRLLEQVAENIWV 618
                 8999999*************************************9998777776653...588999********9887755 PP

>> TIGR01188  drrA: daunorubicin resistance ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   0.0     0.028       1.8      13      42 ..     126     155 ..     119     198 .. 0.90
   2 !   41.5   0.0   3.1e-13     2e-11      93     209 ..     219     335 ..     209     393 .. 0.71
   3 !   21.4   0.0   4.4e-07   2.8e-05      11      50 ..     439     478 ..     436     482 .. 0.90
   4 !   29.4   0.0   1.6e-09     1e-07     116     217 ..     541     640 ..     525     651 .. 0.80

  Alignments for each domain:
  == domain 1    score: 5.6 bits;  conditional E-value: 0.028
   TIGR01188  13 nlkveegevfglLGPnGAGKtttikmLttl 42 
                 +l+++ g+ +gl+  nG GK+t++k +++ 
  MMETSP1137-20121227|6640_1 126 TLELTYGHRYGLIAQNGSGKSTLLKCVAAR 155
                 678889999**************9988765 PP

  == domain 2    score: 41.5 bits;  conditional E-value: 3.1e-13
   TIGR01188  93 lyglpkkeaeeraeellelvelkeaa.dkkvktysgGmrrrlelaasliaqPevlfLDEPtiGLDprtrraiwdlieelkkegvtilltthyleeadkladrva..iidkGkiiaedtpe 209
                 l  +  ++ e+ra ell  + + ++  +k  k +sgG r r+ la +l ++P +l LDEPt  LD  +   + d+++   k +  +llt+h  +  + +++++    +dk  ++  +  +
  MMETSP1137-20121227|6640_1 219 LDKMDPSTFEKRAGELLFGLGFSQKMmQKATKDMSGGWRMRVALAQALFVKPMLLVLDEPTNHLDLGACVWLEDYLS---KWDSILLLTSHSADFLNGVCSKIYhlTVDKRLMLYGGNYD 335
                 5567778899*********99987752677899********************************998777777765...557899******9999999999952234554444444444 PP

  == domain 3    score: 21.4 bits;  conditional E-value: 4.4e-07
   TIGR01188  11 gvnlkveegevfglLGPnGAGKtttikmLttllkPdsGta 50 
                 ++++ ++ ++ ++l+GPnGAGK+t++k++   ++P++G+ 
  MMETSP1137-20121227|6640_1 439 NLEFGIDCDSRIALVGPNGAGKSTLLKLMLQEIEPTEGEI 478
                 577888888999**************************86 PP

  == domain 4    score: 29.4 bits;  conditional E-value: 1.6e-09
   TIGR01188 116 eaadkkvktysgGmrrrlelaasliaqPevlfLDEPtiGLDprtrraiwdlieelkkegvtilltthyleeadkladrvaiidkGkiiaedt.peeLKervgk 217
                 +++ + +kt+s G r rl      + +P++l LDEPt  LD    +++   i++++     ++l +h++   +++a+++ + ++ +i    + ++  K+++ +
  MMETSP1137-20121227|6640_1 541 DKQTNLIKTLSPGFRARLVFCLMSLRNPHLLLLDEPTNPLDMDMIDSLALAIKSFN---GGVVLVSHDFRLLEQVAENIWVCEHKTITPWASdIKAYKKHLRN 640
                 677889***************9999****************987777766666665...6799*********************9987543324455555544 PP

>> TIGR00960  3a0501s02: type II secretory pathway family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.5   0.0    0.0026      0.17      19      55 ..     122     158 ..     110     183 .. 0.81
   2 !   27.2   0.0   9.3e-09   6.1e-07     111     172 ..     223     285 ..     218     323 .. 0.82
   3 !   35.6   0.0   2.5e-11   1.7e-09       2      65 ..     419     483 ..     418     498 .. 0.89
   4 !   20.9   0.0   7.9e-07   5.2e-05     127     208 ..     537     616 ..     512     622 .. 0.83

  Alignments for each domain:
  == domain 1    score: 9.5 bits;  conditional E-value: 0.0026
   TIGR00960  19 ldnvtvkiekGelvflvGhsGaGkstllklilgiekp 55 
                 +++ t++++ G    l+ + G+Gkstllk + ++  p
  MMETSP1137-20121227|6640_1 122 FEDQTLELTYGHRYGLIAQNGSGKSTLLKCVAARMVP 158
                 567789999999999***************9987765 PP

  == domain 2    score: 27.2 bits;  conditional E-value: 9.3e-09
   TIGR00960 111 kgreieervsaalekvGlkdkaka.lPvqlsgGeqqrvaiaravvnkPallladePtgnldde 172
                  +  +e+r+ + l  +G+++k  +   +++sgG + rva+a+a+  kP ll+ dePt  ld  
  MMETSP1137-20121227|6640_1 223 DPSTFEKRAGELLFGLGFSQKMMQkATKDMSGGWRMRVALAQALFVKPMLLVLDEPTNHLDLG 285
                 5777899999999999**99976516689*******************************965 PP

  == domain 3    score: 35.6 bits;  conditional E-value: 2.5e-11
   TIGR00960   2 ikfeqvskaykgaaelal.dnvtvkiekGelvflvGhsGaGkstllklilgiekpsaGkirvsgq 65 
                 + f++vs ay g +e  l  n+++ i+  + + lvG+ GaGkstllkl+l+  +p++G+ir + +
  MMETSP1137-20121227|6640_1 419 LAFQNVSFAYSGKKEDYLyTNLEFGIDCDSRIALVGPNGAGKSTLLKLMLQEIEPTEGEIRRNPH 483
                 689*********999877479***************************************98765 PP

  == domain 4    score: 20.9 bits;  conditional E-value: 7.9e-07
   TIGR00960 127 Glk.dkakalPvqlsgGeqqrvaiaravvnkPallladePtgnlddelsrdilelleevnraGttvlvathdenlveskrkrv 208
                 G++ dk+++l ++ls G + r+      +++P+lll dePt  ld ++   +   ++++n     v++ +hd  l+e+  + +
  MMETSP1137-20121227|6640_1 537 GVTgDKQTNLIKTLSPGFRARLVFCLMSLRNPHLLLLDEPTNPLDMDMIDSLALAIKSFNG---GVVLVSHDFRLLEQVAENI 616
                 55426889999************************************98888777888873...577789******9988766 PP

>> TIGR01166  cbiO: cobalt ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.0   6.4e-05    0.0042       9      44 ..     123     158 ..     118     165 .. 0.86
   2 !   31.4   0.0   3.9e-10   2.6e-08     104     166 ..     227     290 ..     220     310 .. 0.82
   3 !   25.6   0.0   2.3e-08   1.5e-06       9      52 ..     438     481 ..     431     493 .. 0.88
   4 !   17.3   0.0   8.4e-06   0.00055     121     189 ..     543     608 ..     526     609 .. 0.85

  Alignments for each domain:
  == domain 1    score: 14.4 bits;  conditional E-value: 6.4e-05
   TIGR01166   9 kglnlavergevlallGanGaGkstlllhlnGllrP 44 
                 ++  l+++ g++ +l+ +nG+Gkstll++++  + P
  MMETSP1137-20121227|6640_1 123 EDQTLELTYGHRYGLIAQNGSGKSTLLKCVAARMVP 158
                 566788999********************9987766 PP

  == domain 2    score: 31.4 bits;  conditional E-value: 3.9e-10
   TIGR01166 104 verrvrealaavdis.gleerpthllsgGekkrvaiagavalrpdvllldePtagldpaGaeql 166
                  e+r  e l  ++ s ++ +++t+ +sgG + rva+a a+ ++p +l+ldePt  ld      l
  MMETSP1137-20121227|6640_1 227 FEKRAGELLFGLGFSqKMMQKATKDMSGGWRMRVALAQALFVKPMLLVLDEPTNHLDLGACVWL 290
                 567777778888875268899************************************8665555 PP

  == domain 3    score: 25.6 bits;  conditional E-value: 2.3e-08
   TIGR01166   9 kglnlavergevlallGanGaGkstlllhlnGllrPksGkvlld 52 
                 ++l++ ++  +++al+G+nGaGkstll+ +   + P++G++ ++
  MMETSP1137-20121227|6640_1 438 TNLEFGIDCDSRIALVGPNGAGKSTLLKLMLQEIEPTEGEIRRN 481
                 6799999999*****************************99765 PP

  == domain 4    score: 17.3 bits;  conditional E-value: 8.4e-06
   TIGR01166 121 eerpthllsgGekkrvaiagavalrpdvllldePtagldpaGaeqlleilrklreeGktvvisthdvdl 189
                 + +++++ls G + r+    +   +p++llldePt  ld +  + l+ +++ ++     vv+ +hd  l
  MMETSP1137-20121227|6640_1 543 QTNLIKTLSPGFRARLVFCLMSLRNPHLLLLDEPTNPLDMDMIDSLALAIKSFNG---GVVLVSHDFRL 608
                 456789**********999888889***************999999999888763...68889999876 PP

>> TIGR00958  3a01208: antigen peptide transporter 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   0.0     0.029       1.9     494     525 ..     119     150 ..     112     158 .. 0.91
   2 !   24.2   0.0     3e-08   1.9e-06     616     654 ..     250     288 ..     240     324 .. 0.82
   3 !   43.4   0.0   4.7e-14   3.1e-12     479     538 ..     419     478 ..     412     485 .. 0.96
   4 !   15.6   0.0   1.2e-05   0.00079     617     691 ..     549     624 ..     536     636 .. 0.87

  Alignments for each domain:
  == domain 1    score: 4.5 bits;  conditional E-value: 0.029
   TIGR00958 494 kpvlkdLtftlepGevvalVGPsGsGKStvaa 525
                 +++++d t+ l+ G+   l+  +GsGKSt   
  MMETSP1137-20121227|6640_1 119 QQLFEDQTLELTYGHRYGLIAQNGSGKSTLLK 150
                 68999************************865 PP

  == domain 2    score: 24.2 bits;  conditional E-value: 3e-08
   TIGR00958 616 sqlsgGqkqriAiARALvrkPrvLiLDeAtSALDaeveq 654
                 + +sgG + r+A+A AL  kP++L+LDe t  LD     
  MMETSP1137-20121227|6640_1 250 KDMSGGWRMRVALAQALFVKPMLLVLDEPTNHLDLGACV 288
                 679*******************************84333 PP

  == domain 3    score: 43.4 bits;  conditional E-value: 4.7e-14
   TIGR00958 479 veFqdVsFsYPsrpdkpvlkdLtftlepGevvalVGPsGsGKStvaallenlYqPtgGqv 538
                 + Fq+VsF+Y  + +  +  +L f +   + +alVGP+G GKSt   l+ +  +Pt+G++
  MMETSP1137-20121227|6640_1 419 LAFQNVSFAYSGKKEDYLYTNLEFGIDCDSRIALVGPNGAGKSTLLKLMLQEIEPTEGEI 478
                 67********************************************************98 PP

  == domain 4    score: 15.6 bits;  conditional E-value: 1.2e-05
   TIGR00958 617 qlsgGqkqriAiARALvrkPrvLiLDeAtSALDaeveqllqesksaksrtvlliahrLstvek.adkilvlkkgsv 691
                  ls G + r+      +r+P +L+LDe t  LD ++   l    ++ +  v+l+ h   + e+ a++i v ++ ++
  MMETSP1137-20121227|6640_1 549 TLSPGFRARLVFCLMSLRNPHLLLLDEPTNPLDMDMIDSLALAIKSFNGGVVLVSHDFRLLEQvAENIWVCEHKTI 624
                 57889999999999999*****************9888888888888889**********9984678888877655 PP

>> TIGR02211  LolD_lipo_ex: lipoprotein releasing system, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.1   0.0    0.0014     0.092      19      53 ..     120     154 ..     109     167 .. 0.87
   2 !   37.4   0.0   6.1e-12   3.9e-10     112     176 ..     221     286 ..     214     316 .. 0.85
   3 !   21.2   0.0   5.7e-07   3.7e-05       4      63 ..     421     479 ..     418     491 .. 0.85
   4 !   16.9   0.0   1.1e-05   0.00073     139     212 ..     547     616 ..     533     624 .. 0.82

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 0.0014
   TIGR02211  19 evlkgvsleiekgelvaivGssGsGkstllhllgg 53 
                 +++++  le++ g   +++ + GsGkstll  +++
  MMETSP1137-20121227|6640_1 120 QLFEDQTLELTYGHRYGLIAQNGSGKSTLLKCVAA 154
                 677888999*********************98876 PP

  == domain 2    score: 37.4 bits;  conditional E-value: 6.1e-12
   TIGR02211 112 kkskkeakerakellekvglekrinkkp.selsGGerqrvaiaralvnkPklvladePtgnldkkt 176
                 k++ +  ++ra ell  +g+++++ +k+  ++sGG r rva+a+al  kP l++ dePt +ld  +
  MMETSP1137-20121227|6640_1 221 KMDPSTFEKRAGELLFGLGFSQKMMQKAtKDMSGGWRMRVALAQALFVKPMLLVLDEPTNHLDLGA 286
                 667778899************9987776168********************************755 PP

  == domain 3    score: 21.2 bits;  conditional E-value: 5.7e-07
   TIGR02211   4 cenltksykegkleievlkgvsleiekgelvaivGssGsGkstllhllggldkptsGevl 63 
                  +n++  y+ + +e  +++++++ i+    +a+vG  G+Gkstll l+    +pt+Ge+ 
  MMETSP1137-20121227|6640_1 421 FQNVSFAYSGK-KEDYLYTNLEFGIDCDSRIALVGPNGAGKSTLLKLMLQEIEPTEGEIR 479
                 56677777655.5556899****************************999999****996 PP

  == domain 4    score: 16.9 bits;  conditional E-value: 1.1e-05
   TIGR02211 139 pselsGGerqrvaiaralvnkPklvladePtgnldkktakkifelllelnkekntallvvthdlelakkldrvl 212
                    ls G r r       + +P+l+l dePt  ld +  +++   ++      n ++++v+hd +l +++ + +
  MMETSP1137-20121227|6640_1 547 IKTLSPGFRARLVFCLMSLRNPHLLLLDEPTNPLDMDMIDSLALAIKS----FNGGVVLVSHDFRLLEQVAENI 616
                 56799999***99999999****************9887776555554....56789*********99987765 PP

>> TIGR03608  L_ocin_972_ABC: putative bacteriocin export ABC transporter, lactococcin 972 group
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0   1.7e-05    0.0011       6      45 ..     114     153 ..     109     159 .. 0.88
   2 !   26.0   0.0   1.8e-08   1.2e-06     111     167 ..     227     284 ..     212     314 .. 0.81
   3 !   17.7   0.0   6.4e-06   0.00042      10      56 ..     433     479 ..     421     507 .. 0.80
   4 !   24.4   0.0   5.8e-08   3.7e-06     123     204 ..     537     616 ..     514     618 .. 0.82

  Alignments for each domain:
  == domain 1    score: 16.3 bits;  conditional E-value: 1.7e-05
   TIGR03608   6 kkfkdkeilkklslkiekGelvaivGesGsGKstlLnilg 45 
                  ++  ++++++  l++  G+ + ++ + GsGKstlL  ++
  MMETSP1137-20121227|6640_1 114 ISLFGQQLFEDQTLELTYGHRYGLIAQNGSGKSTLLKCVA 153
                 56677899****************************9887 PP

  == domain 2    score: 26.0 bits;  conditional E-value: 1.8e-08
   TIGR03608 111 kekkkkevlekvgl.ekklkkkiyelsgGekqRvalarillkeselilADEPtgsLDk 167
                  ek+  e+l  +g+ +k ++k   ++sgG + Rvala++l+ ++ l++ DEPt  LD 
  MMETSP1137-20121227|6640_1 227 FEKRAGELLFGLGFsQKMMQKATKDMSGGWRMRVALAQALFVKPMLLVLDEPTNHLDL 284
                 5666777888889945556677889*******************************96 PP

  == domain 3    score: 17.7 bits;  conditional E-value: 6.4e-06
   TIGR03608  10 dkeilkklslkiekGelvaivGesGsGKstlLnilgllekkdsgkvi 56 
                 +  + ++l++ i++ + +a+vG  G+GKstlL ++ +  ++ +g++ 
  MMETSP1137-20121227|6640_1 433 EDYLYTNLEFGIDCDSRIALVGPNGAGKSTLLKLMLQEIEPTEGEIR 479
                 44678899************************987665556667765 PP

  == domain 4    score: 24.4 bits;  conditional E-value: 5.8e-08
   TIGR03608 123 gl.ekklkkkiyelsgGekqRvalarillkeselilADEPtgsLDkknreevlellkelkeegktiiivtHdpevaekadrvi 204
                 g+   k+ + i +ls G + R+    + l++++l+l DEPt  LD++  +   +l   +k+ +  +++v Hd  + e++ + i
  MMETSP1137-20121227|6640_1 537 GVtGDKQTNLIKTLSPGFRARLVFCLMSLRNPHLLLLDEPTNPLDMDMID---SLALAIKSFNGGVVLVSHDFRLLEQVAENI 616
                 553456778899*********************************97555...555677888889********9999987765 PP

>> TIGR03864  PQQ_ABC_ATP: ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.1   0.0    0.0013     0.087      13      51 ..     118     156 ..     106     192 .. 0.77
   2 !   31.6   0.0   3.5e-10   2.3e-08     101     171 ..     219     290 ..     213     304 .. 0.86
   3 !   24.1   0.0   6.9e-08   4.5e-06       2      59 ..     419     479 ..     418     485 .. 0.85
   4 !   17.5   0.0     7e-06   0.00046     124     176 ..     541     593 ..     519     615 .. 0.86

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 0.0013
   TIGR03864  13 krralddvsltvakgefvaLLGpnGaGkstLfslltrLy 51 
                  ++ ++d +l+++ g+   L+  nG+GkstL++ ++  +
  MMETSP1137-20121227|6640_1 118 GQQLFEDQTLELTYGHRYGLIAQNGSGKSTLLKCVAARM 156
                 4567788899**********************9887554 PP

  == domain 2    score: 31.6 bits;  conditional E-value: 3.5e-10
   TIGR03864 101 LhGlsraeaeerieealarlglaeraeek.vreLnGGhrrrveiarallhePklLLlDeatvGLDiesraal 171
                 L  +  ++ e+r  e+l  lg++++  +k  ++++GG r rv +a+al  +P lL+lDe+t  LD+ +   l
  MMETSP1137-20121227|6640_1 219 LDKMDPSTFEKRAGELLFGLGFSQKMMQKaTKDMSGGWRMRVALAQALFVKPMLLVLDEPTNHLDLGACVWL 290
                 555666677899999**********99885689********************************9876655 PP

  == domain 3    score: 24.1 bits;  conditional E-value: 6.9e-08
   TIGR03864   2 leveglsfaygkrr...alddvsltvakgefvaLLGpnGaGkstLfslltrLyeakegeik 59 
                 l+ +++sfay+ ++      ++++ +   + +aL+GpnGaGkstL++l+ + +e +egei+
  MMETSP1137-20121227|6640_1 419 LAFQNVSFAYSGKKedyLYTNLEFGIDCDSRIALVGPNGAGKSTLLKLMLQEIEPTEGEIR 479
                 677899999965542324678999*************************999999999996 PP

  == domain 4    score: 17.5 bits;  conditional E-value: 7e-06
   TIGR03864 124 eraeekvreLnGGhrrrveiarallhePklLLlDeatvGLDiesraalveevr 176
                 +++++ +++L+ G r r+      l +P+lLLlDe+t  LD++  ++l  +++
  MMETSP1137-20121227|6640_1 541 DKQTNLIKTLSPGFRARLVFCLMSLRNPHLLLLDEPTNPLDMDMIDSLALAIK 593
                 6778889**********************************998777766665 PP

>> TIGR01842  type_I_sec_PrtD: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.3   0.0    0.0049      0.32     332     365 ..     120     153 ..      97     162 .. 0.83
   2 !   31.1   0.0   3.1e-10     2e-08     449     487 ..     246     284 ..     233     332 .. 0.85
   3 !   25.8   0.0   1.2e-08   7.9e-07     316     376 ..     418     479 ..     401     493 .. 0.87
   4 !   18.4   0.0   2.1e-06   0.00013     453     527 ..     548     620 ..     543     632 .. 0.86

  Alignments for each domain:
  == domain 1    score: 7.3 bits;  conditional E-value: 0.0049
   TIGR01842 332 ktlkgisfalkaGealaiiGpsgsGkssLarllv 365
                 + +++ +++l+ G+  ++i + gsGks+L +++ 
  MMETSP1137-20121227|6640_1 120 QLFEDQTLELTYGHRYGLIAQNGSGKSTLLKCVA 153
                 47788999**********************9986 PP

  == domain 2    score: 31.1 bits;  conditional E-value: 3.1e-10
   TIGR01842 449 gegGaaLsgGqrqRiaLaRalygdPklvvLDePnanLDe 487
                  ++ + +sgG r R+aLa al+ +P+l+vLDeP   LD 
  MMETSP1137-20121227|6640_1 246 QKATKDMSGGWRMRVALAQALFVKPMLLVLDEPTNHLDL 284
                 4567889******************************95 PP

  == domain 3    score: 25.8 bits;  conditional E-value: 1.2e-08
   TIGR01842 316 elevenvslvppeekkktl.kgisfalkaGealaiiGpsgsGkssLarllvGvwlpasGsvr 376
                  l+ +nvs++ +++k++ l ++++f ++  + +a++Gp g+Gks+L +l++  ++p++G++r
  MMETSP1137-20121227|6640_1 418 VLAFQNVSFAYSGKKEDYLyTNLEFGIDCDSRIALVGPNGAGKSTLLKLMLQEIEPTEGEIR 479
                 5788999999998887665389**************************************99 PP

  == domain 4    score: 18.4 bits;  conditional E-value: 2.1e-06
   TIGR01842 453 aaLsgGqrqRiaLaRalygdPklvvLDePnanLDeeGeqalakalkelkarkitvvvithrpsllelv.dkilvlk 527
                 ++Ls G r R+       ++P+l++LDeP   LD +    la a+k+    +  vv+++h  +lle+v ++i v +
  MMETSP1137-20121227|6640_1 548 KTLSPGFRARLVFCLMSLRNPHLLLLDEPTNPLDMDMIDSLALAIKSF---NGGVVLVSHDFRLLEQVaENIWVCE 620
                 589********************************9999999888765...6789**********87625566655 PP

>> TIGR02769  nickel_nikE: nickel import ATP-binding protein NikE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.2   0.0    0.0051      0.33      24      57 ..     119     152 ..     104     163 .. 0.87
   2 !   39.0   0.0   2.1e-12   1.3e-10     116     184 ..     217     285 ..     209     321 .. 0.90
   3 !   18.9   0.0   2.8e-06   0.00018      21      69 ..     431     479 ..     419     484 .. 0.85
   4 !   14.8   0.0     5e-05    0.0033     142     229 ..     541     624 ..     529     646 .. 0.77

  Alignments for each domain:
  == domain 1    score: 8.2 bits;  conditional E-value: 0.0051
   TIGR02769  24 kavldnvslsleeGetvallGrsGaGkstlarll 57 
                 ++++++  l+l  G+  +l+ + G+Gkstl + +
  MMETSP1137-20121227|6640_1 119 QQLFEDQTLELTYGHRYGLIAQNGSGKSTLLKCV 152
                 67788999**********************8865 PP

  == domain 2    score: 39.0 bits;  conditional E-value: 2.1e-12
   TIGR02769 116 rhltsldeserkariaellelvelrsevldklPrqlsGGqlqriniaralavePklivldeavsnldlv 184
                 ++l ++d s  ++r+ ell  +++++++++k  +++sGG   r+++a+al v+P l+vlde    ldl 
  MMETSP1137-20121227|6640_1 217 EKLDKMDPSTFEKRAGELLFGLGFSQKMMQKATKDMSGGWRMRVALAQALFVKPMLLVLDEPTNHLDLG 285
                 67899*************************************************************985 PP

  == domain 3    score: 18.9 bits;  conditional E-value: 2.8e-06
   TIGR02769  21 kqrkavldnvslsleeGetvallGrsGaGkstlarlllGlekPakGevs 69 
                 k+   + +n+++ ++    +al+G  GaGkstl +l+l   +P++Ge++
  MMETSP1137-20121227|6640_1 431 KKEDYLYTNLEFGIDCDSRIALVGPNGAGKSTLLKLMLQEIEPTEGEIR 479
                 44555678999999999******************************97 PP

  == domain 4    score: 14.8 bits;  conditional E-value: 5e-05
   TIGR02769 142 evldklPrqlsGGqlqriniaralavePklivldeavsnldlvlqasilellkklkqefGlaylfithdlrlvqkfaqrvlvldeGqi 229
                 ++   l + ls G   r+        +P+l++lde    ld+ +    ++ l    + f   +++++hd+rl +++a+++ v ++  i
  MMETSP1137-20121227|6640_1 541 DKQTNLIKTLSPGFRARLVFCLMSLRNPHLLLLDEPTNPLDMDM----IDSLALAIKSFNGGVVLVSHDFRLLEQVAENIWVCEHKTI 624
                 555566667777777777776666779**************965....4444444445666789****************99987655 PP

>> TIGR03796  NHLM_micro_ABC1: NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   1.6e-05    0.0011     484     527 ..     111     154 ..      60     180 .. 0.86
   2 !   24.2   0.0     3e-08   1.9e-06     607     670 ..     243     306 ..     236     311 .. 0.83
   3 !   30.4   0.0   3.9e-10   2.6e-08     479     537 ..     420     479 ..     410     488 .. 0.90
   4 !   10.6   0.0   0.00037     0.024     615     677 ..     549     611 ..     538     626 .. 0.85

  Alignments for each domain:
  == domain 1    score: 15.1 bits;  conditional E-value: 1.6e-05
   TIGR03796 484 tfgysaleapliedfslslkpGqrvAlvGgsGsGkstiaklvaG 527
                 +f+ s   ++l ed +l+l+ G+r  l+ + GsGkst+ k va 
  MMETSP1137-20121227|6640_1 111 SFSISLFGQQLFEDQTLELTYGHRYGLIAQNGSGKSTLLKCVAA 154
                 68999999********************************9985 PP

  == domain 2    score: 24.2 bits;  conditional E-value: 3e-08
   TIGR03796 607 aelaegganlsGGqrqRleiARaLvknPsiLilDEatsaLDaetEkaidenlrrRgctciivaH 670
                 + +++  +++sGG r R+ +A aL  +P +L+lDE t  LD  +   +++ l +     ++ +H
  MMETSP1137-20121227|6640_1 243 KMMQKATKDMSGGWRMRVALAQALFVKPMLLVLDEPTNHLDLGACVWLEDYLSKWDSILLLTSH 306
                 456677899********************************98888888777776666666665 PP

  == domain 3    score: 30.4 bits;  conditional E-value: 3.9e-10
   TIGR03796 479 elrnvtfgys.aleapliedfslslkpGqrvAlvGgsGsGkstiaklvaGlyepwsGeil 537
                  ++nv+f+ys + e  l  ++++ ++  +r+AlvG+ G+Gkst+ kl+    ep++Gei+
  MMETSP1137-20121227|6640_1 420 AFQNVSFAYSgKKEDYLYTNLEFGIDCDSRIALVGPNGAGKSTLLKLMLQEIEPTEGEIR 479
                 579******934567899****************************************97 PP

  == domain 4    score: 10.6 bits;  conditional E-value: 0.00037
   TIGR03796 615 nlsGGqrqRleiARaLvknPsiLilDEatsaLDaetEkaidenlrrRgctciivaHRLstiRd 677
                  ls G r Rl       +nP +L+lDE t  LD     ++  +++  +  +++v+H    + +
  MMETSP1137-20121227|6640_1 549 TLSPGFRARLVFCLMSLRNPHLLLLDEPTNPLDMDMIDSLALAIKSFNGGVVLVSHDFRLLEQ 611
                 58999999999999999***************************************7665554 PP

>> TIGR03522  GldA_ABC_ATP: gliding motility-associated ABC transporter ATP-binding subunit GldA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.7   0.0    0.0017      0.11       7      54 ..     111     158 ..     106     183 .. 0.83
   2 !   34.3   0.0   5.5e-11   3.6e-09     103     255 ..     220     373 ..     213     395 .. 0.78
   3 !   36.2   0.0   1.5e-11   9.7e-10      19     180 ..     438     596 ..     420     625 .. 0.72

  Alignments for each domain:
  == domain 1    score: 9.7 bits;  conditional E-value: 0.0017
   TIGR03522   7 dlsklygkqkaldevsfeaekGeivGflGPnGaGkstlmkiltgylka 54 
                 + s +   q+  ++ ++e   G+  G++  nG+Gkstl+k +++ + +
  MMETSP1137-20121227|6640_1 111 SFSISLFGQQLFEDQTLELTYGHRYGLIAQNGSGKSTLLKCVAARMVP 158
                 555554556677888999**********************99876655 PP

  == domain 2    score: 34.3 bits;  conditional E-value: 5.5e-11
   TIGR03522 103 yklkgrklkkrveelielvGlkaeqhkk.igalskGyrqrvGlakallhdPkvlildePttGldPnqlveirevikeiakdktvilsthimqevealcdrv..iiinkGkivadkkleelkaaekkkvievefeeeidlqllekleevsevkklkg 255
                  k++  + +kr  el+   G++++  +k   ++s G+r rv la+al  +P +l+ldePt  ld    v + + + +   d  ++l++h    ++ +c ++  + ++k  ++   + +  + + +++ +++   +e +++ +++l++ ++   + +
  MMETSP1137-20121227|6640_1 220 DKMDPSTFEKRAGELLFGLGFSQKMMQKaTKDMSGGWRMRVALAQALFVKPMLLVLDEPTNHLDLGACVWLEDYLSK--WDSILLLTSHSADFLNGVCSKIyhLTVDKRLMLYGGNYDTYVRTRTENEVNLLKRHEKEQEDIKHLKDFISSCGTYS 373
                 56777778888889998899888776551678*************************************99998876..478899999***********984456778888888899888888887777777777777777777776665555444 PP

  == domain 3    score: 36.2 bits;  conditional E-value: 1.5e-11
   TIGR03522  19 devsfeaekGeivGflGPnGaGkstlmkiltgylkadsGsvavagedvlknslevrkniGylPehnPl..yldlyvreylefsaalyklkgrklkkrveel...ielvGlka.eqhkkigalskGyrqrvGlakallhdPkvlildePttGldPnqlveirevikeia 180
                  ++ f ++  + + ++GPnGaGkstl+k++   ++++ G +  + +       + ++ +  l e  Pl    dl+v             +g k+k  v e    +   G++  +q   i  ls G+r r  +    l +P++l+ldePt  ld + +  +   ik+  
  MMETSP1137-20121227|6640_1 438 TNLEFGIDCDSRIALVGPNGAGKSTLLKLMLQEIEPTEGEIRRNPHLRFGRYNQHSEDVLDL-EKTPLdfLRDLFVDGV-------VTTEG-KKKWDVPEWrakLGIFGVTGdKQTNLIKTLSPGFRARLVFCLMSLRNPHLLLLDEPTNPLDMDMIDSLALAIKSFN 596
                 56778888888999**************************9998887777666666666555.7788722245555544.......44443.33444444400044455555146677999********************************999888877777654 PP

>> TIGR01189  ccmA: heme ABC exporter, ATP-binding protein CcmA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   0.0    0.0002     0.013      12      51 ..     118     157 ..     108     186 .. 0.88
   2 !   21.1   0.0   6.6e-07   4.3e-05     120     172 ..     244     296 ..     223     312 .. 0.83
   3 !   44.9   0.0   3.3e-14   2.1e-12      11     184 ..     432     604 ..     421     616 .. 0.72

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 0.0002
   TIGR01189  12 ervlleglsfelaaGealvveGpnGiGKttLLRilaGLlk 51 
                 +++l+e+ ++el+ G+   +  +nG+GK+tLL+ +a  + 
  MMETSP1137-20121227|6640_1 118 GQQLFEDQTLELTYGHRYGLIAQNGSGKSTLLKCVAARMV 157
                 57899999**************************997665 PP

  == domain 2    score: 21.1 bits;  conditional E-value: 6.6e-07
   TIGR01189 120 ledlpvaqLsAGqkrRlalarLllskaplWiLDEPttalDkegvellaellaa 172
                 + + +++ +s G + R+ala+ l  k  l +LDEPt  lD  +   l++ l++
  MMETSP1137-20121227|6640_1 244 MMQKATKDMSGGWRMRVALAQALFVKPMLLVLDEPTNHLDLGACVWLEDYLSK 296
                 56778899********************************9998888877764 PP

  == domain 3    score: 44.9 bits;  conditional E-value: 3.3e-14
   TIGR01189  11 gervlleglsfelaaGealvveGpnGiGKttLLRilaGLlkpesGevelndkelaeqrdelaeellylgHldgl....KaeLsalEnLkfyaallqseqk...tveealekvgL...sgle.dlpvaqLsAGqkrRlalarLllskaplWiLDEPttalDkegvellaellaaHlargGivllat 184
                  e+ l+++l+f +     ++++GpnG+GK+tLL+++   ++p++Ge++ n  +l        +   y  H++ +    K+ L  l +L f   ++++e k   +v e  +k+g+   +g +   ++++Ls G + Rl +  + l +  l +LDEPt  lD + ++ la ++++   +gG+vl++ 
  MMETSP1137-20121227|6640_1 432 KEDYLYTNLEFGIDCDSRIALVGPNGAGKSTLLKLMLQEIEPTEGEIRRN-PHL--------RFGRYNQHSEDVldleKTPLDFLRDL-FVDGVVTTEGKkkwDVPEWRAKLGIfgvTGDKqTNLIKTLSPGFRARLVFCLMSLRNPHLLLLDEPTNPLDMDMIDSLALAIKSF--NGGVVLVSH 604
                 6788999*****************************************99.232........23345555544311114444444444.55555544433124555555566551115444146799****************************************9999875..566666554 PP

>> TIGR03410  urea_trans_UrtE: urea ABC transporter, ATP-binding protein UrtE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.7   0.0   0.00044     0.029      13      49 ..     119     155 ..     107     164 .. 0.84
   2 !   27.1   0.0   8.7e-09   5.6e-07     122     160 ..     242     280 ..     219     296 .. 0.91
   3 !   18.2   0.0   4.3e-06   0.00028      15      58 ..     436     479 ..     419     486 .. 0.81
   4 !   21.3   0.0     5e-07   3.3e-05     118     228 ..     536     642 ..     514     644 .. 0.83

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 0.00044
   TIGR03410  13 sevlrdvslevekgevvavlGrngvGkttllkalvgl 49 
                  ++++d +le++ g+   ++ +ng Gk+tllk++ + 
  MMETSP1137-20121227|6640_1 119 QQLFEDQTLELTYGHRYGLIAQNGSGKSTLLKCVAAR 155
                 57788999999**********************9875 PP

  == domain 2    score: 27.1 bits;  conditional E-value: 8.7e-09
   TIGR03410 122 kemlkRrgGdLsGGqqqqlaiaRaLvtePklllLDePte 160
                 ++m+++ + d+sGG +  +a+a aL  +P ll+LDePt+
  MMETSP1137-20121227|6640_1 242 QKMMQKATKDMSGGWRMRVALAQALFVKPMLLVLDEPTN 280
                 78999********************************97 PP

  == domain 3    score: 18.2 bits;  conditional E-value: 4.3e-06
   TIGR03410  15 vlrdvslevekgevvavlGrngvGkttllkalvgllkvksGeie 58 
                 + +++++ ++ ++ +a++G ng+Gk+tllk ++  ++ ++Gei+
  MMETSP1137-20121227|6640_1 436 LYTNLEFGIDCDSRIALVGPNGAGKSTLLKLMLQEIEPTEGEIR 479
                 5678999999999*****************************97 PP

  == domain 4    score: 21.3 bits;  conditional E-value: 5e-07
   TIGR03410 118 FPvlkemlkRrgGdLsGGqqqqlaiaRaLvtePklllLDePteGiqPsiikeiekvikelakekdlaillveqvldfaleladrylvlerGevvaegekeeldeekvkkll 228
                 F v  + ++     Ls G +  l      + +P+lllLDePt+ +   +i+ ++ +ik+ +     +++lv + + +  ++a++++v e+ +++   +  ++ ++++++++
  MMETSP1137-20121227|6640_1 536 FGVTGDKQTNLIKTLSPGFRARLVFCLMSLRNPHLLLLDEPTNPLDMDMIDSLALAIKSFNG----GVVLVSHDFRLLEQVAENIWVCEHKTITPWASDIKAYKKHLRNQM 642
                 5555555555666799999999999999999*************************999876....8*********************99998877776666666666655 PP

>> TIGR02315  ABC_phnC: phosphonate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.3   0.0   4.6e-14     3e-12      14     189 ..     118     295 ..     107     325 .. 0.75
   2 !   22.3   0.0   2.4e-07   1.6e-05       2      60 ..     419     479 ..     418     491 .. 0.86
   3 !    9.3   0.0    0.0022      0.14     138     185 ..     542     589 ..     530     625 .. 0.80

  Alignments for each domain:
  == domain 1    score: 44.3 bits;  conditional E-value: 4.6e-14
   TIGR02315  14 gkqalknvnleikkGelvaviGlsGaGkstllrsin.rlveiss.gsillegkevtklkkkelrklrkkigmifqeynlierltvle.nvLsgrlgakstlksllglfseed....kekAlelLervglaelaakra.dqLsGGqqqRvaiaRalaqqpklilaDEPiasLDpksskqvmdllk 189
                 g+q +++  le++ G   ++i + G+Gkstll+++  r+v i +  +i + ++e +   k+++  +   + +         rl+ le +++       + l+s+++ + + d    +++A elL  +g++++ +++a +++sGG + Rva+a al  +p l++ DEP+  LD  ++  + d+l 
  MMETSP1137-20121227|6640_1 118 GQQLFEDQTLELTYGHRYGLIAQNGSGKSTLLKCVAaRMVPIPEfIDIWFLDREAQPSDKSAVDVVIDTVRLEKE------RLEKLEeDIMCESGPEDPRLESIYEKLDKMDpstfEKRAGELLFGLGFSQKMMQKAtKDMSGGWRMRVALAQALFVKPMLLVLDEPTNHLDLGACVWLEDYLS 295
                 5788899999************************96377775441588888888876666665555444444333......44444404444455566778888888877774444689***********9999987367********************************988877766664 PP

  == domain 2    score: 22.3 bits;  conditional E-value: 2.4e-07
   TIGR02315   2 levenlskvypngkq..alknvnleikkGelvaviGlsGaGkstllrsinrlveissgsil 60 
                 l ++n+s  y+++k+     n+++ i+    +a++G+ GaGkstll+ + + +e+++g+i 
  MMETSP1137-20121227|6640_1 419 LAFQNVSFAYSGKKEdyLYTNLEFGIDCDSRIALVGPNGAGKSTLLKLMLQEIEPTEGEIR 479
                 7789999999977652145788889999******************************996 PP

  == domain 3    score: 9.3 bits;  conditional E-value: 0.0022
   TIGR02315 138 laakradqLsGGqqqRvaiaRalaqqpklilaDEPiasLDpksskqvm 185
                 ++++  ++Ls G + R+  +   +++p+l+l DEP+  LD      + 
  MMETSP1137-20121227|6640_1 542 KQTNLIKTLSPGFRARLVFCLMSLRNPHLLLLDEPTNPLDMDMIDSLA 589
                 45566789********************************87665554 PP

>> TIGR01288  nodI: nodulation ABC transporter NodI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.3   0.0   5.9e-13   3.8e-11      13     208 ..     115     321 ..     105     338 .. 0.75
   2 !   21.3   0.0   3.8e-07   2.5e-05       9      61 ..     423     478 ..     418     493 .. 0.85
   3 !   14.1   0.0   5.9e-05    0.0038     130     169 ..     544     583 ..     526     623 .. 0.83

  Alignments for each domain:
  == domain 1    score: 40.3 bits;  conditional E-value: 5.9e-13
   TIGR01288  13 sygdkvvvndlsftiaagecfgllgpngagkstiarlvlg.lis.pdegkitvlg.epvpararlarakigvv....pqfdnldreftvr...en..l.lvfgryfglstreieevipsllefarleska.dvrvadlsggmkrrltlaralindpqllildepttgldpharhliwerlrsllargkti.lltthlmeeaerlcdrlcvl 208
                 s  ++ + +d ++ ++ g  +gl+  ng+gkst+ + v   +++ p+   i  l+ e +p+   +  + i  v     ++++l++++      e+  l  ++ +  +++  ++e+    ll    +  k  +    d+sgg + r++la+al   p ll+ldept  ld  a   +w  l   l++  +i llt+h  +  + +c ++  l
  MMETSP1137-20121227|6640_1 115 SLFGQQLFEDQTLELTYGHRYGLIAQNGSGKSTLLKCVAArMVPiPEFIDIWFLDrEAQPSDKSAVDVVIDTVrlekERLEKLEEDIMCEsgpEDprLeSIYEKLDKMDPSTFEKRAGELLFGLGFSQKMmQKATKDMSGGWRMRVALAQALFVKPMLLVLDEPTNHLDLGAC--VW--LEDYLSKWDSIlLLTSHSADFLNGVCSKIYHL 321
                 44445567888999********************999987244336777888898356799988888988888333346788888876642222222225899999**********999986666666651455679********************************9985..66..56677776666156888888888888877655 PP

  == domain 2    score: 21.3 bits;  conditional E-value: 3.8e-07
   TIGR01288   9 gvsksygdk...vvvndlsftiaagecfgllgpngagkstiarlvlglispdegki 61 
                 +vs +y +k    +  +l f i     + l+gpngagkst+ +l+l  i p eg+i
  MMETSP1137-20121227|6640_1 423 NVSFAYSGKkedYLYTNLEFGIDCDSRIALVGPNGAGKSTLLKLMLQEIEPTEGEI 478
                 666666554233577899************************************98 PP

  == domain 3    score: 14.1 bits;  conditional E-value: 5.9e-05
   TIGR01288 130 dvrvadlsggmkrrltlaralindpqllildepttgldph 169
                    + +ls g++ rl ++   + +p+ll+ldept  ld  
  MMETSP1137-20121227|6640_1 544 TNLIKTLSPGFRARLVFCLMSLRNPHLLLLDEPTNPLDMD 583
                 556789*****************************99965 PP

>> TIGR00968  3a0106s01: sulfate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.2   0.0   0.00064     0.042      13      48 ..     119     154 ..     107     184 .. 0.83
   2 !   30.7   0.0   6.8e-10   4.4e-08      99     174 ..     219     295 ..     215     308 .. 0.80
   3 !   16.5   0.0   1.5e-05   0.00097      18      58 ..     439     479 ..     423     484 .. 0.89
   4 !   15.7   0.0   2.7e-05    0.0018     129     215 ..     548     630 ..     533     644 .. 0.87

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 0.00064
   TIGR00968  13 fqalddvdlevktGslvallGpsGsGkstllrviaG 48 
                  q ++d  le+  G+  +l+   GsGkstll+ +a 
  MMETSP1137-20121227|6640_1 119 QQLFEDQTLELTYGHRYGLIAQNGSGKSTLLKCVAA 154
                 47788999************************9996 PP

  == domain 2    score: 30.7 bits;  conditional E-value: 6.8e-10
   TIGR00968  99 irkkdkakikakveellelvql.eklgdrypsqlsGGqrqrvalaralavepqvllldepfgaldakvrkelrawlr 174
                 + k+d  +  ++  ell  +++ +k+ ++  +++sGG r rvala+al v+p +l+ldep   ld      l  +l 
  MMETSP1137-20121227|6640_1 219 LDKMDPSTFEKRAGELLFGLGFsQKMMQKATKDMSGGWRMRVALAQALFVKPMLLVLDEPTNHLDLGACVWLEDYLS 295
                 5577777888888888877766257899999********************************99766555555555 PP

  == domain 3    score: 16.5 bits;  conditional E-value: 1.5e-05
   TIGR00968  18 dvdlevktGslvallGpsGsGkstllrviaGlekpdsGril 58 
                 ++++ ++  s +al+Gp G+Gkstll+++    +p++G+i+
  MMETSP1137-20121227|6640_1 439 NLEFGIDCDSRIALVGPNGAGKSTLLKLMLQEIEPTEGEIR 479
                 67888999999*****************9999999999986 PP

  == domain 4    score: 15.7 bits;  conditional E-value: 2.7e-05
   TIGR00968 129 sqlsGGqrqrvalaralavepqvllldepfgaldakvrkelrawlrklhdevkvttvfvthdqeealevadrivvlekGkieqvgsa 215
                 + ls G r r+ +      +p++llldep   ld  + + l   ++ +        v+v+hd     +va++i v e+  i    s 
  MMETSP1137-20121227|6640_1 548 KTLSPGFRARLVFCLMSLRNPHLLLLDEPTNPLDMDMIDSLALAIKSFNGG----VVLVSHDFRLLEQVAENIWVCEHKTITPWASD 630
                 569999999*999999999**********************9999887765....599******************99988766555 PP

>> TIGR02204  MsbA_rel: ABC transporter, permease/ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.0      0.35        23     356     387 ..     122     153 ..      50     175 .. 0.88
   2 !   18.5   0.0   2.1e-06   0.00013     465     508 ..     239     283 ..     214     292 .. 0.86
   3 !   44.4   0.0     3e-14   1.9e-12     337     398 ..     418     479 ..     366     482 .. 0.79
   4 !    9.6   0.0    0.0011     0.069     475     522 ..     548     595 ..     541     626 .. 0.80

  Alignments for each domain:
  == domain 1    score: 1.3 bits;  conditional E-value: 0.35
   TIGR02204 356 ldgldltvrpGetvalvGPsGaGkstllelll 387
                 +++  l++  G++  l+   G+Gkstll+ + 
  MMETSP1137-20121227|6640_1 122 FEDQTLELTYGHRYGLIAQNGSGKSTLLKCVA 153
                 5677889999*****************99765 PP

  == domain 2    score: 18.5 bits;  conditional E-value: 2.1e-06
   TIGR02204 465 GydtllGer.gvtLsGGqkqriaiarailkdapiLLLdeatsaLd 508
                 G++ ++ ++ +  +sGG + r+a+a+a++ +  +L+Lde t+ Ld
  MMETSP1137-20121227|6640_1 239 GFSQKMMQKaTKDMSGGWRMRVALAQALFVKPMLLVLDEPTNHLD 283
                 56555444415689******************************9 PP

  == domain 3    score: 44.4 bits;  conditional E-value: 3e-14
   TIGR02204 337 eiefeevkfayParpdqkaldgldltvrpGetvalvGPsGaGkstllelllrfydPqsGail 398
                  ++f++v+fay  + +     +l++ ++   ++alvGP GaGkstll+l+l+  +P++G+i+
  MMETSP1137-20121227|6640_1 418 VLAFQNVSFAYSGKKEDYLYTNLEFGIDCDSRIALVGPNGAGKSTLLKLMLQEIEPTEGEIR 479
                 479********************************************************997 PP

  == domain 4    score: 9.6 bits;  conditional E-value: 0.0011
   TIGR02204 475 vtLsGGqkqriaiarailkdapiLLLdeatsaLdaeseqlvqqaleel 522
                  tLs G + r+      l++  +LLLde t+ Ld +  + +  a+++ 
  MMETSP1137-20121227|6640_1 548 KTLSPGFRARLVFCLMSLRNPHLLLLDEPTNPLDMDMIDSLALAIKSF 595
                 589*******************************99888777777655 PP

>> TIGR03269  met_CoM_red_A2: methyl coenzyme M reductase system, component A2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   0.0     0.018       1.2       3      45 ..     109     151 ..     104     160 .. 0.74
   2 !   36.8   0.0   5.5e-12   3.6e-10     418     523 ..     242     345 ..     223     352 .. 0.81
   3 !   11.3   0.0    0.0003      0.02     306     341 ..     443     478 ..     419     484 .. 0.84
   4 !   19.8   0.0   8.1e-07   5.3e-05     424     497 ..     546     615 ..     535     632 .. 0.86

  Alignments for each domain:
  == domain 1    score: 5.4 bits;  conditional E-value: 0.018
   TIGR03269   3 venltkkfdglevlknisleleeGevlGilGksGaGksvllhl 45 
                 +e    ++ g++ +++  lel  G+  G++ + G+Gks ll+ 
  MMETSP1137-20121227|6640_1 109 IESFSISLFGQQLFEDQTLELTYGHRYGLIAQNGSGKSTLLKC 151
                 5556666667777788888888888888888888888888765 PP

  == domain 2    score: 36.8 bits;  conditional E-value: 5.5e-12
   TIGR03269 418 keildklpdelseGerhrvalaqvlikeprivildeptGtmdpitkvkvaesilkareeleetfvivshdmdfvlevcdraa.lmrdGkivki.Gdpeeiveelteee 523
                 +++++k ++++s G r rvalaq l  +p +++ldept  +d  + v +++ + k     +   ++ sh  df++ vc ++  l  d +++   G+ +  v+  te+e
  MMETSP1137-20121227|6640_1 242 QKMMQKATKDMSGGWRMRVALAQALFVKPMLLVLDEPTNHLDLGACVWLEDYLSK----WDSILLLTSHSADFLNGVCSKIYhLTVDKRLMLYgGNYDTYVRTRTENE 345
                 57899*************************************9999999998876....577899*************998514455555444155566677777766 PP

  == domain 3    score: 11.3 bits;  conditional E-value: 0.0003
   TIGR03269 306 evkekeifGlvGtsGaGkttlskilaGvleptsGev 341
                  +       lvG  GaGk+tl k+++  +ept+Ge+
  MMETSP1137-20121227|6640_1 443 GIDCDSRIALVGPNGAGKSTLLKLMLQEIEPTEGEI 478
                 555555567999999999999999999999999997 PP

  == domain 4    score: 19.8 bits;  conditional E-value: 8.1e-07
   TIGR03269 424 lpdelseGerhrvalaqvlikeprivildeptGtmdpitkvkvaesilkareeleetfvivshdmdfvlevcdr 497
                 l ++ls G r r+ +  + +++p++++ldept  +d    +++ +s+  a + ++   v+vshd  ++ +v + 
  MMETSP1137-20121227|6640_1 546 LIKTLSPGFRARLVFCLMSLRNPHLLLLDEPTNPLD----MDMIDSLALAIKSFNGGVVLVSHDFRLLEQVAEN 615
                 55789999999999999999***********98777....57789999999999999******99999888765 PP

>> TIGR01277  thiQ: thiamine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.6   0.0   0.00051     0.033      18      55 ..     126     163 ..     113     184 .. 0.82
   2 !   20.9   0.0   7.1e-07   4.6e-05     120     199 ..     243     318 ..     228     327 .. 0.77
   3 !   25.0   0.0   4.1e-08   2.7e-06      13      58 ..     436     481 ..     419     491 .. 0.81
   4 !   14.6   0.0     6e-05    0.0039     122     207 ..     543     624 ..     528     629 .. 0.82

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 0.00051
   TIGR01277  18 dlsveaGervailGesGaGkstllnliaGflepasGei 55 
                  l++  G+r  ++ + G+Gkstll+ +a  + p+   i
  MMETSP1137-20121227|6640_1 126 TLELTYGHRYGLIAQNGSGKSTLLKCVAARMVPIPEFI 163
                 5788899**********************999986554 PP

  == domain 2    score: 20.9 bits;  conditional E-value: 7.1e-07
   TIGR01277 120 dylerlpeelsGGqrqrvalarclvrekpillldepfsaldpklreemlalvkkladekkltlllvthslsdaaaiasqv 199
                 +++++  +++sGG r rvala+ l  +  +l+ldep   ld          ++   ++ +  lll +hs + + ++ s++
  MMETSP1137-20121227|6640_1 243 KMMQKATKDMSGGWRMRVALAQALFVKPMLLVLDEPTNHLDLGAC----VWLEDYLSKWDSILLLTSHSADFLNGVCSKI 318
                 57899999****************99888999*****99996433....3445555666677777777776666666665 PP

  == domain 3    score: 25.0 bits;  conditional E-value: 4.1e-08
   TIGR01277  13 lplefdlsveaGervailGesGaGkstllnliaGflepasGeikvn 58 
                 l+ ++++ ++   r+a++G+ GaGkstll+l+   +ep++Gei+ n
  MMETSP1137-20121227|6640_1 436 LYTNLEFGIDCDSRIALVGPNGAGKSTLLKLMLQEIEPTEGEIRRN 481
                 4455666788889*****************************9866 PP

  == domain 4    score: 14.6 bits;  conditional E-value: 6e-05
   TIGR01277 122 lerlpeelsGGqrqrvalarclvrekpillldepfsaldpklreemlalvkkladekkltlllvthslsdaaaiasqvvvvedGki 207
                    l + ls G r r+ +    +r+  +llldep   ld  + +  lal  k+    +  ++lv+h+   + ++a+++ v e+  i
  MMETSP1137-20121227|6640_1 543 QTNLIKTLSPGFRARLVFCLMSLRNPHLLLLDEPTNPLDMDMID-SLALAIKS---FNGGVVLVSHDFRLLEQVAENIWVCEHKTI 624
                 5668889********999888899999************87654.45665554...56789********99999999998887655 PP

>> TIGR02982  heterocyst_DevA: ABC exporter ATP-binding subunit, DevA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.0     0.093         6      18      53 ..     119     154 ..     110     178 .. 0.88
   2 !   35.0   0.0   3.5e-11   2.2e-09     112     174 ..     221     284 ..     213     321 .. 0.86
   3 !   12.0   0.0   0.00039     0.025       3      62 ..     420     478 ..     418     485 .. 0.83
   4 !   20.6   0.0   8.7e-07   5.7e-05     132     215 ..     540     620 ..     521     625 .. 0.84

  Alignments for each domain:
  == domain 1    score: 4.2 bits;  conditional E-value: 0.093
   TIGR02982  18 kqvlfdinleiepgeiviltGpsGsGkttlltligg 53 
                 +q++ d  le++ g    l  + GsGk tll  +++
  MMETSP1137-20121227|6640_1 119 QQLFEDQTLELTYGHRYGLIAQNGSGKSTLLKCVAA 154
                 68888999999999999999***********98876 PP

  == domain 2    score: 35.0 bits;  conditional E-value: 3.5e-11
   TIGR02982 112 klsakeakakaeelleavgleerl.dykpedlsgGqkqrvaiaralvarPklvladePtaaldk 174
                 k+  ++ +++a ell  +g+ +++ ++  +d+sgG + rva+a+al  +P l++ dePt  ld 
  MMETSP1137-20121227|6640_1 221 KMDPSTFEKRAGELLFGLGFSQKMmQKATKDMSGGWRMRVALAQALFVKPMLLVLDEPTNHLDL 284
                 5566777899999******99876267789********************************96 PP

  == domain 3    score: 12.0 bits;  conditional E-value: 0.00039
   TIGR02982   3 kirelnhyygkgelrkqvlfdinleiepgeiviltGpsGsGkttlltligglrsvqeGel 62 
                 + ++++  y +g+++  +  ++++ i+ +  + l Gp G+Gk tll l+    +  eGe+
  MMETSP1137-20121227|6640_1 420 AFQNVSFAY-SGKKEDYLYTNLEFGIDCDSRIALVGPNGAGKSTLLKLMLQEIEPTEGEI 478
                 566676666.57778888899999************************987777777776 PP

  == domain 4    score: 20.6 bits;  conditional E-value: 8.7e-07
   TIGR02982 132 eerldykpedlsgGqkqrvaiaralvarPklvladePtaaldkksgrevvellqklareqgttillvthdnrild.vadrivkme 215
                 +++     + ls G + r+ +      +P+l+l dePt  ld     ++++ l    +  +  ++lv hd r+l+ va+ i   e
  MMETSP1137-20121227|6640_1 540 GDKQTNLIKTLSPGFRARLVFCLMSLRNPHLLLLDEPTNPLDM----DMIDSLALAIKSFNGGVVLVSHDFRLLEqVAENIWVCE 620
                 5667777899********************************7....578888888889999**********9964788776555 PP

>> TIGR02142  modC_ABC: molybdate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.0     0.039       2.5      24      45 ..     133     154 ..     111     166 .. 0.83
   2 !   32.5   0.0   1.7e-10   1.1e-08     122     166 ..     242     286 ..     220     322 .. 0.82
   3 !   13.1   0.0   0.00014    0.0093      16      57 ..     440     481 ..     429     496 .. 0.87
   4 !   21.0   0.0   5.6e-07   3.7e-05     129     210 ..     547     624 ..     520     648 .. 0.89

  Alignments for each domain:
  == domain 1    score: 5.0 bits;  conditional E-value: 0.039
   TIGR02142  24 gvtalFGrsGsGktslirliaG 45 
                  + +l  + GsGk++l++++a 
  MMETSP1137-20121227|6640_1 133 HRYGLIAQNGSGKSTLLKCVAA 154
                 56788999************96 PP

  == domain 2    score: 32.5 bits;  conditional E-value: 1.7e-10
   TIGR02142 122 ehLleRlpgkLsGGekqRvaigRAlLssPeLLlmDePLaaLDekr 166
                 ++++++ ++++sGG + Rva++ Al  +P LL++DeP   LD   
  MMETSP1137-20121227|6640_1 242 QKMMQKATKDMSGGWRMRVALAQALFVKPMLLVLDEPTNHLDLGA 286
                 468999***********************************9765 PP

  == domain 3    score: 13.1 bits;  conditional E-value: 0.00014
   TIGR02142  16 vdlelpgkgvtalFGrsGsGktslirliaGLtrpdegeivld 57 
                 +++ ++ + ++al G  G+Gk++l++l+   + p+egei  +
  MMETSP1137-20121227|6640_1 440 LEFGIDCDSRIALVGPNGAGKSTLLKLMLQEIEPTEGEIRRN 481
                 5677788889****************************9765 PP

  == domain 4    score: 21.0 bits;  conditional E-value: 5.6e-07
   TIGR02142 129 pgkLsGGekqRvaigRAlLssPeLLlmDePLaaLDekrkkeilPyLerlsaelkiPilyvsHsldevarladrvvvledGrv 210
                  ++Ls G + R       L +P+LLl+DeP   LD+     ++  L    ++++  +++vsH++  ++++a+++ v e+  +
  MMETSP1137-20121227|6640_1 547 IKTLSPGFRARLVFCLMSLRNPHLLLLDEPTNPLDMD----MIDSLALAIKSFNGGVVLVSHDFRLLEQVAENIWVCEHKTI 624
                 5789*******************************96....677788888999*********************99987665 PP

>> TIGR01978  sufC: FeS assembly ATPase SufC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.0   8.6e-05    0.0056       2      48 ..     108     154 ..     107     159 .. 0.91
   2 !   22.9   0.0   1.6e-07   1.1e-05     111     228 ..     219     332 ..     211     341 .. 0.86
   3 !   15.0   0.0   4.3e-05    0.0028      17      59 ..     438     478 ..     426     484 .. 0.78
   4 !   19.3   0.0   2.1e-06   0.00013     142     212 ..     547     614 ..     491     625 .. 0.85

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 8.6e-05
   TIGR01978   2 kikdlhvsvedkeiLkglnlevkkGevhaimGpnGsGkstLskvlag 48 
                 ki+ +++s+  +++ ++ +le++ G+ + ++ +nGsGkstL k +a 
  MMETSP1137-20121227|6640_1 108 KIESFSISLFGQQLFEDQTLELTYGHRYGLIAQNGSGKSTLLKCVAA 154
                 688889999999******************************99986 PP

  == domain 2    score: 22.9 bits;  conditional E-value: 1.6e-07
   TIGR01978 111 eeeldllefekllkeklelleldeelleRslneGfsGGekkrneilqlallePklaiLDeiDsGlDvDalkivaegvnklreeekalliithyerllelikPdvvhvlldGrivksGd 228
                  +++d + fek   e l  l ++++++++   +  sGG + r  + q ++++P l +LDe    lD+ a   + + ++k+   ++ ll+ +h   +l+ +  +  h+ +d r++  G+
  MMETSP1137-20121227|6640_1 219 LDKMDPSTFEKRAGELLFGLGFSQKMMQKAT-KDMSGGWRMRVALAQALFVKPMLLVLDEPTNHLDLGACVWLEDYLSKW---DSILLLTSHSADFLNGVCSKIYHLTVDKRLMLYGG 332
                 5678889999999999999999999999875.679*********************************988887777776...45688889999999999999999999988877665 PP

  == domain 3    score: 15.0 bits;  conditional E-value: 4.3e-05
   TIGR01978  17 kglnlevkkGevhaimGpnGsGkstLskvlaghekyevtsGei 59 
                 ++l+  ++     a++GpnG+GkstL k +    ++e t+Gei
  MMETSP1137-20121227|6640_1 438 TNLEFGIDCDSRIALVGPNGAGKSTLLKLMLQ--EIEPTEGEI 478
                 56667777777789*************98875..455666666 PP

  == domain 4    score: 19.3 bits;  conditional E-value: 2.1e-06
   TIGR01978 142 neGfsGGekkrneilqlallePklaiLDeiDsGlDvDalkivaegvnklreeekalliithyerllelikP 212
                  +  s G + r   + ++l +P+l +LDe    lD+D +  +a  ++++   + ++++++h  rlle+++ 
  MMETSP1137-20121227|6640_1 547 IKTLSPGFRARLVFCLMSLRNPHLLLLDEPTNPLDMDMIDSLALAIKSF---NGGVVLVSHDFRLLEQVAE 614
                 45678888999999***********************999998888766...679************9874 PP

>> TIGR03771  anch_rpt_ABC: anchored repeat-type ABC transporter, ATP-binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   0.0     0.045       2.9       2      28 ..     128     154 ..     127     165 .. 0.85
   2 !   28.0   0.0   5.4e-09   3.5e-07     105     181 ..     243     316 ..     239     328 .. 0.80
   3 !   21.3   0.0   6.1e-07     4e-05       7      39 ..     448     480 ..     442     496 .. 0.88
   4 !   15.7   0.0   3.1e-05     0.002     111     185 ..     547     618 ..     530     632 .. 0.81

  Alignments for each domain:
  == domain 1    score: 5.3 bits;  conditional E-value: 0.045
   TIGR03771   2 svdkGellgllGpnGaGkttllrailg 28 
                 ++  G+  gl+  nG+Gk+tll+++ +
  MMETSP1137-20121227|6640_1 128 ELTYGHRYGLIAQNGSGKSTLLKCVAA 154
                 56678889***************9876 PP

  == domain 2    score: 28.0 bits;  conditional E-value: 5.4e-09
   TIGR03771 105 eladrpvGelsGGqrqrvlvaralavkpslllldepftGldlpsqellvelfeelagegtailmtthdlaeavatcd 181
                 ++ +++  ++sGG r rv +a+al vkp ll+ldep   ldl +   l + +   ++ ++ +l+t+h       +c+
  MMETSP1137-20121227|6640_1 243 KMMQKATKDMSGGWRMRVALAQALFVKPMLLVLDEPTNHLDLGACVWLEDYL---SKWDSILLLTSHSADFLNGVCS 316
                 567788899*********************************9998888764...5556666677776544445555 PP

  == domain 3    score: 21.3 bits;  conditional E-value: 6.1e-07
   TIGR03771   7 ellgllGpnGaGkttllrailglikvakGsvkv 39 
                   ++l+GpnGaGk+tll+ +l  i++++G+++ 
  MMETSP1137-20121227|6640_1 448 SRIALVGPNGAGKSTLLKLMLQEIEPTEGEIRR 480
                 5699**************************986 PP

  == domain 4    score: 15.7 bits;  conditional E-value: 3.1e-05
   TIGR03771 111 vGelsGGqrqrvlvaralavkpslllldepftGldlpsqellvelfeelagegtailmtthdlaeavatcdrvvl 185
                 +  ls G r r++       +p+lllldep   ld+  +++l+  ++++ g    +++++hd+    ++++ + +
  MMETSP1137-20121227|6640_1 547 IKTLSPGFRARLVFCLMSLRNPHLLLLDEPTNPLDMDMIDSLALAIKSFNG---GVVLVSHDFRLLEQVAENIWV 618
                 7789*******9999888899******************999877776654...578888887666666665555 PP

>> TIGR00972  3a0107s01c2: phosphate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.4   0.0     0.002      0.13       3      48 ..     108     153 ..     106     165 .. 0.84
   2 !   26.4   0.0   1.3e-08   8.6e-07     138     189 ..     245     296 ..     220     344 .. 0.83
   3 !   14.6   0.0     5e-05    0.0033       3      49 ..     420     469 ..     418     501 .. 0.73
   4 !   18.4   0.0   3.6e-06   0.00024     133     214 ..     538     617 ..     520     642 .. 0.86

  Alignments for each domain:
  == domain 1    score: 9.4 bits;  conditional E-value: 0.002
   TIGR00972   3 evknlklfygekealkdvnleikknkvtaliGpsGcGkstllrsln 48 
                 ++++++++   ++  +d +le++  +  +li   G+Gkstll+++ 
  MMETSP1137-20121227|6640_1 108 KIESFSISLFGQQLFEDQTLELTYGHRYGLIAQNGSGKSTLLKCVA 153
                 6677777777788899999999999999***************984 PP

  == domain 2    score: 26.4 bits;  conditional E-value: 1.3e-08
   TIGR00972 138 lkksalsLsGGqqqrlciaralavePevlLlDePtsaLDpiatekieeliqe 189
                 ++k++  +sGG + r+++a+al v+P +l+lDePt  LD  a   +e+ +++
  MMETSP1137-20121227|6640_1 245 MQKATKDMSGGWRMRVALAQALFVKPMLLVLDEPTNHLDLGACVWLEDYLSK 296
                 5677789********************************9999998888765 PP

  == domain 3    score: 14.6 bits;  conditional E-value: 5e-05
   TIGR00972   3 evknlklfygeke...alkdvnleikknkvtaliGpsGcGkstllrslnr 49 
                 + +n+++ y+ k+     +++++ i  ++ +al+Gp G+Gkstll+ + +
  MMETSP1137-20121227|6640_1 420 AFQNVSFAYSGKKedyLYTNLEFGIDCDSRIALVGPNGAGKSTLLKLMLQ 469
                 567778878655434345788889999999***************97643 PP

  == domain 4    score: 18.4 bits;  conditional E-value: 3.6e-06
   TIGR00972 133 evkdklkksalsLsGGqqqrlciaralavePevlLlDePtsaLDpiatekieeliqeLkkkytivivthnmqqaarvsdkta 214
                    dk  +   +Ls G + rl+       +P++lLlDePt  LD  +  ++   i++ +    +v+v h++   ++v++++ 
  MMETSP1137-20121227|6640_1 538 VTGDKQTNLIKTLSPGFRARLVFCLMSLRNPHLLLLDEPTNPLDMDMIDSLALAIKSFNG--GVVLVSHDFRLLEQVAENIW 617
                 556777777889**********9999999******************9999999998865..799*****999999998765 PP

>> TIGR02770  nickel_nikD: nickel import ATP-binding protein NikD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.0     0.074       4.8       3      30 ..     123     150 ..     121     161 .. 0.80
   2 !   24.6   0.0   4.5e-08   2.9e-06     112     169 ..     238     295 ..     216     322 .. 0.84
   3 !    8.1   0.0     0.005      0.32       3      47 ..     438     478 ..     436     488 .. 0.77
   4 !   30.1   0.0   9.3e-10   6.1e-08     125     204 ..     549     624 ..     544     647 .. 0.90

  Alignments for each domain:
  == domain 1    score: 4.3 bits;  conditional E-value: 0.074
   TIGR02770   3 qdvnlslkrgkvlalvGesGsGksltal 30 
                 +d  l+l  g+  +l+ + GsGks+  +
  MMETSP1137-20121227|6640_1 123 EDQTLELTYGHRYGLIAQNGSGKSTLLK 150
                 56679999****************7543 PP

  == domain 2    score: 24.6 bits;  conditional E-value: 4.5e-08
   TIGR02770 112 LeeaeevlkkypfelsGGmlqRvmialallleaplliaDePttdlDvvvqaevLklle 169
                 L  ++++++k   ++sGG   Rv +a al +++ ll+ DePt  lD+ + + + ++l+
  MMETSP1137-20121227|6640_1 238 LGFSQKMMQKATKDMSGGWRMRVALAQALFVKPMLLVLDEPTNHLDLGACVWLEDYLS 295
                 5557899***************************************988776555554 PP

  == domain 3    score: 8.1 bits;  conditional E-value: 0.005
   TIGR02770   3 qdvnlslkrgkvlalvGesGsGksltalailglldkeltktsGei 47 
                 +++++ + ++  +alvG  G+Gks+  + +l+    e+  t+Gei
  MMETSP1137-20121227|6640_1 438 TNLEFGIDCDSRIALVGPNGAGKSTLLKLMLQ----EIEPTEGEI 478
                 68999*******************86555444....344455554 PP

  == domain 4    score: 30.1 bits;  conditional E-value: 9.3e-10
   TIGR02770 125 elsGGmlqRvmialallleaplliaDePttdlDvvvqaevLklleelrekrglgillithDlgvvaeladevavmekGki 204
                  ls G   R++  l +l ++ ll+ DePt  lD++    +++ l    ++++ g++l++hD++ + ++a+++ v e+  i
  MMETSP1137-20121227|6640_1 549 TLSPGFRARLVFCLMSLRNPHLLLLDEPTNPLDMD----MIDSLALAIKSFNGGVVLVSHDFRLLEQVAENIWVCEHKTI 624
                 589999***************************75....68999999999************************998766 PP

>> TIGR01846  type_I_sec_HlyB: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.8   0.0   1.6e-10     1e-08     472     626 ..     121     284 ..     111     297 .. 0.76
   2 !   20.7   0.0   3.5e-07   2.3e-05     456     514 ..     419     478 ..     415     481 .. 0.88
   3 !   10.3   0.0   0.00051     0.033     593     666 ..     549     621 ..     542     630 .. 0.80

  Alignments for each domain:
  == domain 1    score: 31.8 bits;  conditional E-value: 1.6e-10
   TIGR01846 472 vlsnlsldikaGeviGivGpsGsGkstltkllq.rl.yvPekGrvlvdgvdlaladPawlrrqvgvvlqenvlfsrsirdnialakPaise.ekviaaaklaGahdfiselkq.....GyetevgekGa.alsGGqrqrialaralvanPrilildeatsaldy 626
                 ++++ +l+++ G+  G++ + GsGkstl k +  r+  +Pe   +   + +    d +++   +  v  e+  +++   d ++ + P+ +  e + +         f ++  +     G+ +++ +k +  +sGG r r+ala+al ++P +l+lde t  ld 
  MMETSP1137-20121227|6640_1 121 LFEDQTLELTYGHRYGLIAQNGSGKSTLLKCVAaRMvPIPEFIDIWFLDREAQPSDKSAVDVVIDTVRLEKERLEKLEEDIMCESGPEDPRlESIYEKLDKMDPSTFEKRAGEllfglGFSQKMMQKATkDMSGGWRMRVALAQALFVKPMLLVLDEPTNHLDL 284
                 678889************************98624314778777777777777778887777777777777777777777778888988762444444444444555544332233339999988886527*******************************97 PP

  == domain 2    score: 20.7 bits;  conditional E-value: 3.5e-07
   TIGR01846 456 iefenirfrykedspe.vlsnlsldikaGeviGivGpsGsGkstltkllqrlyvPekGrv 514
                 + f+n+ f y+  + + + +nl++ i     i +vGp G+Gkstl kl+ +   P +G++
  MMETSP1137-20121227|6640_1 419 LAFQNVSFAYSGKKEDyLYTNLEFGIDCDSRIALVGPNGAGKSTLLKLMLQEIEPTEGEI 478
                 689*******9877661568****************************988888888876 PP

  == domain 3    score: 10.3 bits;  conditional E-value: 0.00051
   TIGR01846 593 alsGGqrqrialaralvanPrilildeatsaldyeseavimrnlreickgrtviiiahrlstvra.adrilvlek 666
                 +ls G r r+      + nP++l+lde t  ld++  +++   +++   g  v+ ++h +  + + a++i v e+
  MMETSP1137-20121227|6640_1 549 TLSPGFRARLVFCLMSLRNPHLLLLDEPTNPLDMDMIDSLALAIKSFNGG--VVLVSHDFRLLEQvAENIWVCEH 621
                 6999******************************9999998888877665..55556655555442667777665 PP

>> TIGR03005  ectoine_ehuA: ectoine/hydroxyectoine ABC transporter, ATP-binding protein EhuA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   0.0     0.018       1.2      17      46 ..     123     152 ..     109     161 .. 0.87
   2 !   31.8   0.0   2.7e-10   1.8e-08     118     218 ..     222     319 ..     216     351 .. 0.80
   3 !   13.8   0.0   8.2e-05    0.0053      18      58 ..     439     479 ..     425     494 .. 0.83
   4 !   12.3   0.0   0.00023     0.015     137     219 ..     540     618 ..     511     633 .. 0.83

  Alignments for each domain:
  == domain 1    score: 6.1 bits;  conditional E-value: 0.018
   TIGR03005  17 dglelevaaGekvaliGpsGsGkstilril 46 
                 ++  le++ G++  li   GsGkst+l+ +
  MMETSP1137-20121227|6640_1 123 EDQTLELTYGHRYGLIAQNGSGKSTLLKCV 152
                 566789999******************975 PP

  == domain 2    score: 31.8 bits;  conditional E-value: 2.7e-10
   TIGR03005 118 varaeaekravelldmvGladka.dalpaqlsGGqkqrvaiaralalrpkvllfdevtsaldpelveevlnvlrrlasetdltmllvthemgfarefadrvl 218
                 + ++  ekra ell  +G+++k+ ++    +sGG + rva+a+al ++p +l++de+t  ld   +      l +  s+ d  +ll +h   f + ++ ++ 
  MMETSP1137-20121227|6640_1 222 MDPSTFEKRAGELLFGLGFSQKMmQKATKDMSGGWRMRVALAQALFVKPMLLVLDEPTNHLDLGACV----WLEDYLSKWDSILLLTSHSADFLNGVCSKIY 319
                 777889***************972556778*******************************976653....3566667777788888888888777777665 PP

  == domain 3    score: 13.8 bits;  conditional E-value: 8.2e-05
   TIGR03005  18 glelevaaGekvaliGpsGsGkstilrilmtletideGsik 58 
                 +le+ ++   ++al+Gp G+Gkst+l++++   +  eG+i+
  MMETSP1137-20121227|6640_1 439 NLEFGIDCDSRIALVGPNGAGKSTLLKLMLQEIEPTEGEIR 479
                 6788899999*****************88765555667765 PP

  == domain 4    score: 12.3 bits;  conditional E-value: 0.00023
   TIGR03005 137 adkadalpaqlsGGqkqrvaiaralalrpkvllfdevtsaldpelveevlnvlrrlasetdltmllvthemgfarefadrvlf 219
                 +dk+ +l   ls G + r+        +p++ll+de+t  ld ++++ +   ++ +       ++lv+h++++ +++a+ +  
  MMETSP1137-20121227|6640_1 540 GDKQTNLIKTLSPGFRARLVFCLMSLRNPHLLLLDEPTNPLDMDMIDSLALAIKSFN----GGVVLVSHDFRLLEQVAENIWV 618
                 69999999**********9999887789******************99877777654....4678999999999999887765 PP

>> TIGR03797  NHLM_micro_ABC2: NHLM bacteriocin system ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.3   0.0    0.0095      0.62     463     498 ..     116     151 ..     103     158 .. 0.86
   2 !   19.3   0.0     1e-06   6.8e-05     582     620 ..     245     283 ..     241     300 .. 0.92
   3 !   27.7   0.0   3.2e-09   2.1e-07     453     510 ..     420     478 ..     414     481 .. 0.89
   4 !    9.0   0.0    0.0014     0.093     587     646 ..     548     607 ..     542     625 .. 0.84

  Alignments for each domain:
  == domain 1    score: 6.3 bits;  conditional E-value: 0.0095
   TIGR03797 463 kdgplvLddvslkiepGefvaivGaSGsGKStllrl 498
                   g++ ++d +l+   G   +++ + GsGKStll+ 
  MMETSP1137-20121227|6640_1 116 LFGQQLFEDQTLELTYGHRYGLIAQNGSGKSTLLKC 151
                 55788999999***********************85 PP

  == domain 2    score: 19.3 bits;  conditional E-value: 1e-06
   TIGR03797 582 isegggtlSGGQrQRlliAralvrkPrillfDEATSALD 620
                 ++++++ +SGG r R+ +A+al  kP +l++DE T  LD
  MMETSP1137-20121227|6640_1 245 MQKATKDMSGGWRMRVALAQALFVKPMLLVLDEPTNHLD 283
                 6678899*****************************999 PP

  == domain 3    score: 27.7 bits;  conditional E-value: 3.2e-09
   TIGR03797 453 evdrvtFrYekdgp.lvLddvslkiepGefvaivGaSGsGKStllrlLLgFekPesGsv 510
                 + ++v+F+Y+   +     ++ + i+    +a+vG+ G+GKStll+l+L   +P++G++
  MMETSP1137-20121227|6640_1 420 AFQNVSFAYSGKKEdYLYTNLEFGIDCDSRIALVGPNGAGKSTLLKLMLQEIEPTEGEI 478
                 679******86655156689******************************999999998 PP

  == domain 4    score: 9.0 bits;  conditional E-value: 0.0014
   TIGR03797 587 gtlSGGQrQRlliAralvrkPrillfDEATSALDNrtQaiVsesleklkvtRiviAHRLS 646
                 +tlS G r Rl+      r P++ll+DE T  LD  +      +++ ++   +++ H   
  MMETSP1137-20121227|6640_1 548 KTLSPGFRARLVFCLMSLRNPHLLLLDEPTNPLDMDMIDSLALAIKSFNGGVVLVSHDFR 607
                 699*******************************99999999999999988888888554 PP

>> TIGR02324  CP_lyasePhnL: phosphonate C-P lyase system protein PhnL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.1   0.0   0.00033     0.022      23      57 ..     121     155 ..     115     171 .. 0.88
   2 !   25.7   0.0   2.2e-08   1.4e-06     122     181 ..     224     283 ..     207     291 .. 0.86
   3 !   17.5   0.0   7.2e-06   0.00047      25      68 ..     438     481 ..     424     511 .. 0.82
   4 ?    6.2   0.0     0.021       1.4     149     188 ..     549     588 ..     541     618 .. 0.70

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 0.00033
   TIGR02324  23 vlkevsleveaGelvalsGksGaGkstllkslyan 57 
                  +++ +le++ G+   l+ + G+Gkstllk++ a 
  MMETSP1137-20121227|6640_1 121 LFEDQTLELTYGHRYGLIAQNGSGKSTLLKCVAAR 155
                 567789999**********************9765 PP

  == domain 2    score: 25.7 bits;  conditional E-value: 2.2e-08
   TIGR02324 122 reearakakellarlniperLWslaPatfsGGekqRvniaraliadrPiLL.LdePtasLd 181
                   + +++a ell  l  ++++ + a    sGG + Rv +a+al + +P+LL LdePt  Ld
  MMETSP1137-20121227|6640_1 224 PSTFEKRAGELLFGLGFSQKMMQKATKDMSGGWRMRVALAQALFV-KPMLLvLDEPTNHLD 283
                 5567899**************************************.7766549*****998 PP

  == domain 3    score: 17.5 bits;  conditional E-value: 7.2e-06
   TIGR02324  25 kevsleveaGelvalsGksGaGkstllkslyanYlpesgrilvr 68 
                 +++++ ++    +al G+ GaGkstllk + ++  p  g+i+ +
  MMETSP1137-20121227|6640_1 438 TNLEFGIDCDSRIALVGPNGAGKSTLLKLMLQEIEPTEGEIRRN 481
                 678888999999*************************9999765 PP

  == domain 4    score: 6.2 bits;  conditional E-value: 0.021
   TIGR02324 149 tfsGGekqRvniaraliadrPiLLLdePtasLdaanrkvv 188
                 t s G + R+      + +  +LLLdePt  Ld   ++  
  MMETSP1137-20121227|6640_1 549 TLSPGFRARLVFCLMSLRNPHLLLLDEPTNPLDMDMIDSL 588
                 7888888888888777775667899*******98877633 PP

>> TIGR00955  3a01204: pigment precursor permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.0      0.12       7.5      49      75 ..     130     156 ..      91     159 .. 0.80
   2 !   24.8   0.0   2.5e-08   1.6e-06     162     199 ..     247     284 ..     236     296 .. 0.89
   3 !    8.2   0.0    0.0027      0.18      54      73 ..     450     469 ..     445     481 .. 0.86
   4 !   24.2   0.0   3.7e-08   2.4e-06     161     206 ..     544     589 ..     537     603 .. 0.87

  Alignments for each domain:
  == domain 1    score: 2.8 bits;  conditional E-value: 0.12
   TIGR00955  49 ksGellAvlGsSGaGKtTLlnalafrs 75 
                   G    ++   G+GK+TLl+ +a r 
  MMETSP1137-20121227|6640_1 130 TYGHRYGLIAQNGSGKSTLLKCVAARM 156
                 556666677789***********9985 PP

  == domain 2    score: 24.8 bits;  conditional E-value: 2.5e-08
   TIGR00955 162 grvkglSgGerkRlalaselltdPilLfcDEPTsGLDs 199
                   +k +SgG r R+ala+ l  +P+lL++DEPT  LD 
  MMETSP1137-20121227|6640_1 247 KATKDMSGGWRMRVALAQALFVKPMLLVLDEPTNHLDL 284
                 45799*******************************95 PP

  == domain 3    score: 8.2 bits;  conditional E-value: 0.0027
   TIGR00955  54 lAvlGsSGaGKtTLlnalaf 73 
                 +A++G+ GaGK+TLl+ + +
  MMETSP1137-20121227|6640_1 450 IALVGPNGAGKSTLLKLMLQ 469
                 89*************98765 PP

  == domain 4    score: 24.2 bits;  conditional E-value: 3.7e-08
   TIGR00955 161 pgrvkglSgGerkRlalaselltdPilLfcDEPTsGLDsfsaasvv 206
                  + +k+lS G r Rl +    l +P+lL++DEPT  LD  +  s+ 
  MMETSP1137-20121227|6640_1 544 TNLIKTLSPGFRARLVFCLMSLRNPHLLLLDEPTNPLDMDMIDSLA 589
                 5678**********************************98877765 PP

>> TIGR03265  PhnT2: putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.0      0.25        16      17      51 ..     119     153 ..     104     158 .. 0.81
   2 !   30.6   0.0   6.7e-10   4.3e-08     105     167 ..     221     284 ..     217     304 .. 0.84
   3 !   11.2   0.0   0.00053     0.035      21      63 ..     438     480 ..     419     484 .. 0.85
   4 !   16.2   0.0   1.6e-05     0.001     132     239 ..     547     650 ..     514     652 .. 0.84

  Alignments for each domain:
  == domain 1    score: 2.4 bits;  conditional E-value: 0.25
   TIGR03265  17 ftalkdislsvkkgelvclLGPsGCGkttLLriia 51 
                  + ++d  l+++ g    l+   G Gk+tLL+++a
  MMETSP1137-20121227|6640_1 119 QQLFEDQTLELTYGHRYGLIAQNGSGKSTLLKCVA 153
                 5667788888999999999999***********98 PP

  == domain 2    score: 30.6 bits;  conditional E-value: 6.7e-10
   TIGR03265 105 klkreevaerveelLelvglsgs.eekyPgqlsGGqqqrvaLaralalsPglLLLDePlsaLDa 167
                 k++ +  ++r  elL  +g+s++  +k    +sGG + rvaLa+al ++P lL+LDeP   LD 
  MMETSP1137-20121227|6640_1 221 KMDPSTFEKRAGELLFGLGFSQKmMQKATKDMSGGWRMRVALAQALFVKPMLLVLDEPTNHLDL 284
                 566677788888999888887642689999*****************************99995 PP

  == domain 3    score: 11.2 bits;  conditional E-value: 0.00053
   TIGR03265  21 kdislsvkkgelvclLGPsGCGkttLLriiaGLekqdaGaill 63 
                 +++++ +  +  ++l+GP G Gk+tLL+++    ++++G+i  
  MMETSP1137-20121227|6640_1 438 TNLEFGIDCDSRIALVGPNGAGKSTLLKLMLQEIEPTEGEIRR 480
                 567888889999****************998777788888865 PP

  == domain 4    score: 16.2 bits;  conditional E-value: 1.6e-05
   TIGR03265 132 PgqlsGGqqqrvaLaralalsPglLLLDePlsaLDakvrekLreelkklqrklgvttimvthdqeealslaDrivvmnkgkieqvgtPeeiYeqPatkfvadfvGevn 239
                    ls G + r+ +       P+lLLLDeP   LD  + ++L   +k++        ++v hd     ++a+ i v ++ +i+  ++  + Y++   + +a+ v ++n
  MMETSP1137-20121227|6640_1 547 IKTLSPGFRARLVFCLMSLRNPHLLLLDEPTNPLDMDMIDSLALAIKSFNG----GVVLVSHDFRLLEQVAENIWVCEHKTITPWASDIKAYKKHLRNQMAQDVKRMN 650
                 456888888888888888899*************************99876....4589******999****************999999999988887887777776 PP

>> TIGR03411  urea_trans_UrtD: urea ABC transporter, ATP-binding protein UrtD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.1   0.0     0.003      0.19       4      53 ..     108     157 ..     106     193 .. 0.89
   2 ?    7.3   0.0     0.011       0.7     120     175 ..     227     283 ..     209     343 .. 0.71
   3 !   22.2   0.0   3.1e-07     2e-05      18      61 ..     437     480 ..     417     493 .. 0.79
   4 !   21.0   0.0   7.1e-07   4.6e-05     135     216 ..     541     620 ..     529     626 .. 0.89

  Alignments for each domain:
  == domain 1    score: 9.1 bits;  conditional E-value: 0.003
   TIGR03411   4 evedvsvsfdgfkalndlslsveegelrviiGpnGaGkttllDvitGktr 53 
                 ++e  s+s  g +  +d +l+++ g+   +i  nG+Gk+tll  ++ ++ 
  MMETSP1137-20121227|6640_1 108 KIESFSISLFGQQLFEDQTLELTYGHRYGLIAQNGSGKSTLLKCVAARMV 157
                 577888888899999999************************99988765 PP

  == domain 2    score: 7.3 bits;  conditional E-value: 0.011
   TIGR03411 120 ekerieevleligLeekadkka.glLshGqkqwLeigmllvqepkllllDePvaGmt 175
                  ++r  e+l  +g ++k+ +ka   +s G + ++ ++  l  +p ll+lDeP+  + 
  MMETSP1137-20121227|6640_1 227 FEKRAGELLFGLGFSQKMMQKAtKDMSGGWRMRVALAQALFVKPMLLVLDEPTNHLD 283
                 56666677777777777766661579**************************97664 PP

  == domain 3    score: 22.2 bits;  conditional E-value: 3.1e-07
   TIGR03411  18 lndlslsveegelrviiGpnGaGkttllDvitGktrpdeGsvlf 61 
                  ++l++ ++ ++  +++GpnGaGk+tll ++   ++p+eG++  
  MMETSP1137-20121227|6640_1 437 YTNLEFGIDCDSRIALVGPNGAGKSTLLKLMLQEIEPTEGEIRR 480
                 57899999999999**************************9975 PP

  == domain 4    score: 21.0 bits;  conditional E-value: 7.1e-07
   TIGR03411 135 ekadkkaglLshGqkqwLeigmllvqepkllllDePvaGmtdeetektaellkelakersvvvvehDmefvrelaekvtvlh 216
                 +k+++   +Ls G + +L   ++ +++p+llllDeP+  +  +  ++ a  +k+ ++   vv+v hD   ++++ae++ v +
  MMETSP1137-20121227|6640_1 541 DKQTNLIKTLSPGFRARLVFCLMSLRNPHLLLLDEPTNPLDMDMIDSLALAIKSFNG--GVVLVSHDFRLLEQVAENIWVCE 620
                 556677889*******************************99999999999999876..6999*************998865 PP

>> TIGR02203  MsbA_lipidA: lipid A export permease/ATP-binding protein MsbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.0      0.03       1.9     347     379 ..     120     152 ..      82     165 .. 0.83
   2 !   18.5   0.0   1.9e-06   0.00012     459     502 ..     239     283 ..     235     290 .. 0.87
   3 !   30.1   0.0   5.8e-10   3.8e-08     332     390 ..     419     478 ..     416     483 .. 0.94
   4 ?    5.8   0.0     0.013      0.88     470     504 ..     549     583 ..     532     625 .. 0.82

  Alignments for each domain:
  == domain 1    score: 4.6 bits;  conditional E-value: 0.03
   TIGR02203 347 ealdsislkveaGevvalvGrsGsGkstlvnll 379
                 + +++  l+++ G++  l+ + GsGkstl++ +
  MMETSP1137-20121227|6640_1 120 QLFEDQTLELTYGHRYGLIAQNGSGKSTLLKCV 152
                 556777899999*****************9876 PP

  == domain 2    score: 18.5 bits;  conditional E-value: 1.9e-06
   TIGR02203 459 GldtevGengsk.LsGGqRqRlaiaRallkdaPiLiLDeatsaLD 502
                 G+ +++ ++++k +sGG R R+a+a al+    +L+LDe t  LD
  MMETSP1137-20121227|6640_1 239 GFSQKMMQKATKdMSGGWRMRVALAQALFVKPMLLVLDEPTNHLD 283
                 77777777766449****************************999 PP

  == domain 3    score: 30.1 bits;  conditional E-value: 5.8e-10
   TIGR02203 332 vefrnvtfrypgddreal.dsislkveaGevvalvGrsGsGkstlvnllpRFyepdsGei 390
                 + f+nv+f y g++ + l  ++++ ++   ++alvG+ G+Gkstl++l+   +ep++Gei
  MMETSP1137-20121227|6640_1 419 LAFQNVSFAYSGKKEDYLyTNLEFGIDCDSRIALVGPNGAGKSTLLKLMLQEIEPTEGEI 478
                 689*********999988479*************************************99 PP

  == domain 4    score: 5.8 bits;  conditional E-value: 0.013
   TIGR02203 470 kLsGGqRqRlaiaRallkdaPiLiLDeatsaLDne 504
                  Ls G R Rl      l++  +L+LDe t  LD +
  MMETSP1137-20121227|6640_1 549 TLSPGFRARLVFCLMSLRNPHLLLLDEPTNPLDMD 583
                 69******************************986 PP

>> TIGR03258  PhnT: 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   1.7e-05    0.0011       8      58 ..     106     156 ..     100     189 .. 0.86
   2 !   24.2   0.0     5e-08   3.3e-06     114     170 ..     226     283 ..     217     294 .. 0.80
   3 !    9.2   0.0    0.0018      0.12      23      65 ..     436     478 ..     418     481 .. 0.78
   4 !    9.8   0.0    0.0012     0.078     129     199 ..     540     605 ..     531     643 .. 0.83

  Alignments for each domain:
  == domain 1    score: 15.9 bits;  conditional E-value: 1.7e-05
   TIGR03258   8 GvvleslrvaygarvvlddlsleieaGellallGksGsGkttllravaGfv 58 
                  v++es++++  ++ +++d +le+  G    l+ + GsGk+tll+ va  +
  MMETSP1137-20121227|6640_1 106 DVKIESFSISLFGQQLFEDQTLELTYGHRYGLIAQNGSGKSTLLKCVAARM 156
                 699********************************************9765 PP

  == domain 2    score: 24.2 bits;  conditional E-value: 5e-08
   TIGR03258 114 liaervadalklvqlsda.aarlpaqlsGGqqqrvalaralvvrpdvllldeplsald 170
                   ++r  + l  +++s+   ++  + +sGG + rvala+al v+p +l+ldep   ld
  MMETSP1137-20121227|6640_1 226 TFEKRAGELLFGLGFSQKmMQKATKDMSGGWRMRVALAQALFVKPMLLVLDEPTNHLD 283
                 55666666666667766414567789***************************99998 PP

  == domain 3    score: 9.2 bits;  conditional E-value: 0.0018
   TIGR03258  23 vlddlsleieaGellallGksGsGkttllravaGfvkadGGrl 65 
                 +  +l + i+    +al+G+ G+Gk+tll+++   +++  G +
  MMETSP1137-20121227|6640_1 436 LYTNLEFGIDCDSRIALVGPNGAGKSTLLKLMLQEIEPTEGEI 478
                 5678999999999*****************9988888777765 PP

  == domain 4    score: 9.8 bits;  conditional E-value: 0.0012
   TIGR03258 129 sdaaarlpaqlsGGqqqrvalaralvvrpdvllldeplsaldaqlrasvveelkalhrelpeltvlyvthd 199
                 +d  ++l + ls G + r+ +      +p++llldep   ld ++  s+   +k++     +  v+ v+hd
  MMETSP1137-20121227|6640_1 540 GDKQTNLIKTLSPGFRARLVFCLMSLRNPHLLLLDEPTNPLDMDMIDSLALAIKSF-----NGGVVLVSHD 605
                 6888899999**********99999999***************9999988777765.....3455555555 PP

>> TIGR01187  potA: polyamine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.0       0.7        45       2      18 ..     138     154 ..     137     183 .. 0.88
   2 !   31.3   0.0   3.7e-10   2.4e-08      68     132 ..     218     283 ..     215     286 .. 0.88
   3 !    7.2   0.0    0.0078      0.51       1      27 [.     452     478 ..     452     482 .. 0.91
   4 !   13.2   0.0   0.00011    0.0074      97     171 ..     546     616 ..     532     637 .. 0.82
   5 ?    0.5   0.0      0.84        55     128     148 ..     631     651 ..     627     655 .. 0.85

  Alignments for each domain:
  == domain 1    score: 0.8 bits;  conditional E-value: 0.7
   TIGR01187   2 LGpsGsGkttlLrllaG 18 
                 +   GsGk+tlL+ +a 
  MMETSP1137-20121227|6640_1 138 IAQNGSGKSTLLKCVAA 154
                 5678*********9985 PP

  == domain 2    score: 31.3 bits;  conditional E-value: 3.7e-10
   TIGR01187  68 kmrkvpkaeikervkeaLelvql.eefakrkpsqlsGGqrqrvalaravvkkPkiLLlDeplsaLD 132
                 k++k++ ++ ++r  e+L    + +++ ++  +++sGG r rvala+a+  kP +L+lDep   LD
  MMETSP1137-20121227|6640_1 218 KLDKMDPSTFEKRAGELLFGLGFsQKMMQKATKDMSGGWRMRVALAQALFVKPMLLVLDEPTNHLD 283
                 678899999999999998655552678899999****************************99998 PP

  == domain 3    score: 7.2 bits;  conditional E-value: 0.0078
   TIGR01187   1 lLGpsGsGkttlLrllaGleeldsGki 27 
                 l+Gp G+Gk+tlL+l+    e+ +G+i
  MMETSP1137-20121227|6640_1 452 LVGPNGAGKSTLLKLMLQEIEPTEGEI 478
                 78*************999999999987 PP

  == domain 4    score: 13.2 bits;  conditional E-value: 0.00011
   TIGR01187  97 kpsqlsGGqrqrvalaravvkkPkiLLlDeplsaLDkkLrdqmqlelkalqeklGitvvlvthDqeealtmsdri 171
                  ++ ls G r r+ +      +P++LLlDep   LD  + d + l +k+++      vvlv hD +    +++ i
  MMETSP1137-20121227|6640_1 546 LIKTLSPGFRARLVFCLMSLRNPHLLLLDEPTNPLDMDMIDSLALAIKSFNG----GVVLVSHDFRLLEQVAENI 616
                 56789**********99999**********************9999998875....4688999977555555555 PP

  == domain 5    score: 0.5 bits;  conditional E-value: 0.84
   TIGR01187 128 lsaLDkkLrdqmqlelkalqe 148
                 + a  k+Lr+qm +++k+++ 
  MMETSP1137-20121227|6640_1 631 IKAYKKHLRNQMAQDVKRMNA 651
                 568899************976 PP

>> TIGR01193  bacteriocin_ABC: ABC-type bacteriocin transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.7   0.0    0.0035      0.23     472     520 ..     105     152 ..      90     165 .. 0.86
   2 !   17.9   0.0   2.9e-06   0.00019     598     644 ..     237     284 ..     226     310 .. 0.88
   3 !   26.3   0.0   8.4e-09   5.5e-07     474     536 ..     419     483 ..     410     507 .. 0.88
   4 ?    2.9   0.0     0.098       6.4     610     683 ..     548     621 ..     512     631 .. 0.78

  Alignments for each domain:
  == domain 1    score: 7.7 bits;  conditional E-value: 0.0035
   TIGR01193 472 gdievndvsysyGygsevledislkikknekitlvGlsGsGkstlakll 520
                  d++++  s s  +g++++ed +l+++  ++  l+   GsGkstl k +
  MMETSP1137-20121227|6640_1 105 RDVKIESFSISL-FGQQLFEDQTLELTYGHRYGLIAQNGSGKSTLLKCV 152
                 566666666654.99******************************9975 PP

  == domain 2    score: 17.9 bits;  conditional E-value: 2.9e-06
   TIGR01193 598 plGyqtelseea.ssisgGqkqrlalarallsdskvlildestsnldl 644
                  lG++ ++ ++a   +sgG + r+ala+al+++  +l+lde t +ldl
  MMETSP1137-20121227|6640_1 237 GLGFSQKMMQKAtKDMSGGWRMRVALAQALFVKPMLLVLDEPTNHLDL 284
                 578877776655168*******************************97 PP

  == domain 3    score: 26.3 bits;  conditional E-value: 8.4e-09
   TIGR01193 474 ievndvsysy.Gygse.vledislkikknekitlvGlsGsGkstlakllvkffqaesGeillngk 536
                 + +++vs+ y G  ++ +  ++++ i+ +++i+lvG  G+Gkstl kl+++  ++++Gei  n++
  MMETSP1137-20121227|6640_1 419 LAFQNVSFAYsGKKEDyLYTNLEFGIDCDSRIALVGPNGAGKSTLLKLMLQEIEPTEGEIRRNPH 483
                 678999**9944444425689***************************************98865 PP

  == domain 4    score: 2.9 bits;  conditional E-value: 0.098
   TIGR01193 610 ssisgGqkqrlalarallsdskvlildestsnldlltekkivenllklkdktiifvahrlsvakks.dkiivlde 683
                  ++s G + rl +    l + ++l+lde t  ld+ +   +   + ++ +  +++v+h + + +++ ++i v ++
  MMETSP1137-20121227|6640_1 548 KTLSPGFRARLVFCLMSLRNPHLLLLDEPTNPLDMDMIDSLALAIKSF-NGGVVLVSHDFRLLEQVaENIWVCEH 621
                 68999****************************996555444444444.56788888888776665145555554 PP

>> TIGR02314  ABC_MetN: D-methionine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.9   0.0   0.00026     0.017      21      52 ..     122     153 ..     111     161 .. 0.87
   2 !   24.8   0.0   3.2e-08   2.1e-06     109     212 ..     219     319 ..     214     351 .. 0.79
   3 ?    5.2   0.0     0.029       1.9      22      62 ..     438     478 ..     421     482 .. 0.76
   4 !    9.7   0.0    0.0013     0.085     127     216 ..     535     621 ..     517     648 .. 0.83

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 0.00026
   TIGR02314  21 ldnvslfvpkgqifgvigasgagkstlircvn 52 
                 +++ +l +  g+ +g+i   g+gkstl++cv 
  MMETSP1137-20121227|6640_1 122 FEDQTLELTYGHRYGLIAQNGSGKSTLLKCVA 153
                 5677889999********************96 PP

  == domain 2    score: 24.8 bits;  conditional E-value: 3.2e-08
   TIGR02314 109 lentpkekikrkvtellalvglsdkk.dsypsnlsggqkqrvaiaralasepkvllcdeatsaldpattqsilellkeinrrlgltillithemdvvkricdeva 212
                 l++      +++  ell  +g+s+k  +    ++sgg + rva+a+al  +p +l+ de t  ld  +       l +   + +  +ll +h  d +  +c ++ 
  MMETSP1137-20121227|6640_1 219 LDKMDPSTFEKRAGELLFGLGFSQKMmQKATKDMSGGWRMRVALAQALFVKPMLLVLDEPTNHLDLGACVW----LEDYLSKWDSILLLTSHSADFLNGVCSKIY 319
                 555666778999************972455679********************************987655....455555666667888899999999998875 PP

  == domain 3    score: 5.2 bits;  conditional E-value: 0.029
   TIGR02314  22 dnvslfvpkgqifgvigasgagkstlircvnllekptsgav 62 
                  n+++ +     + ++g  gagkstl++ +    +pt+g++
  MMETSP1137-20121227|6640_1 438 TNLEFGIDCDSRIALVGPNGAGKSTLLKLMLQEIEPTEGEI 478
                 5666666666677899************9877778999976 PP

  == domain 4    score: 9.7 bits;  conditional E-value: 0.0013
   TIGR02314 127 lvgl.sdkkdsypsnlsggqkqrvaiaralasepkvllcdeatsaldpattqsilellkeinrrlgltillithemdvvkricdevavidk 216
                 + g+ +dk+      ls g + r+        +p++ll de t  ld     s+   +k  n      ++l++h++ ++ ++ +++ v ++
  MMETSP1137-20121227|6640_1 535 IFGVtGDKQTNLIKTLSPGFRARLVFCLMSLRNPHLLLLDEPTNPLDMDMIDSLALAIKSFNG----GVVLVSHDFRLLEQVAENIWVCEH 621
                 55552588899999***********9999999*****************99999988888876....578899999999999888877765 PP

>> TIGR01186  proV: glycine betaine/L-proline transport ATP binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.0      0.15       9.8      11      40 ..     124     153 ..     118     171 .. 0.85
   2 !   22.2   0.0   2.1e-07   1.4e-05      96     161 ..     217     283 ..     211     299 .. 0.91
   3 !   17.0   0.0   8.5e-06   0.00055      14      50 ..     442     478 ..     435     482 .. 0.87
   4 !    8.4   0.0    0.0033      0.21     128     200 ..     548     616 ..     535     625 .. 0.84

  Alignments for each domain:
  == domain 1    score: 3.0 bits;  conditional E-value: 0.15
   TIGR01186  11 dvdleieeGeiiviiGlsGsGkstlvrlln 40 
                 d  le++ G  + +i   GsGkstl++ + 
  MMETSP1137-20121227|6640_1 124 DQTLELTYGHRYGLIAQNGSGKSTLLKCVA 153
                 6778999999999*************9875 PP

  == domain 2    score: 22.2 bits;  conditional E-value: 2.1e-07
   TIGR01186  96 lellkideqerkekalealklvdl.eeyedryPdelsGGmqqrvGlaralaaePdlllmdeafsald 161
                  +l k+d    +++a e+l  +++ ++ +++  +++sGG + rv la+al ++P ll++de+   ld
  MMETSP1137-20121227|6640_1 217 EKLDKMDPSTFEKRAGELLFGLGFsQKMMQKATKDMSGGWRMRVALAQALFVKPMLLVLDEPTNHLD 283
                 5889999999999***********889999********************************99998 PP

  == domain 3    score: 17.0 bits;  conditional E-value: 8.5e-06
   TIGR01186  14 leieeGeiiviiGlsGsGkstlvrllnrliePtaGki 50 
                 + i+    i ++G+ G+Gkstl++l+ + iePt+G+i
  MMETSP1137-20121227|6640_1 442 FGIDCDSRIALVGPNGAGKSTLLKLMLQEIEPTEGEI 478
                 55666667899************************98 PP

  == domain 4    score: 8.4 bits;  conditional E-value: 0.0033
   TIGR01186 128 delsGGmqqrvGlaralaaePdlllmdeafsaldPlirdelqdelvklqkklqktivfithdldealrlgdri 200
                 + ls G + r+        +P lll+de+   ld     ++ d l    k  +  +v+++hd+    ++++ i
  MMETSP1137-20121227|6640_1 548 KTLSPGFRARLVFCLMSLRNPHLLLLDEPTNPLD----MDMIDSLALAIKSFNGGVVLVSHDFRLLEQVAENI 616
                 5689999999988888889***********9999....5888899888899999********87666666666 PP

>> TIGR01184  ntrCD: nitrate ABC transporter, ATP-binding proteins C and D
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   0.0      0.04       2.6       3      34 ..     124     155 ..     122     165 .. 0.85
   2 !   26.7   0.0   1.2e-08   7.9e-07     106     146 ..     243     283 ..     230     299 .. 0.88
   3 !   10.1   0.0    0.0015     0.097       5      43 ..     441     479 ..     437     484 .. 0.85
   4 ?    7.3   0.0     0.011      0.69     109     174 ..     544     605 ..     512     616 .. 0.75

  Alignments for each domain:
  == domain 1    score: 5.4 bits;  conditional E-value: 0.04
   TIGR01184   3 dvdleikkgefislighsgcgkstllnliagl 34 
                 d  le+  g    li   g gkstll  +a  
  MMETSP1137-20121227|6640_1 124 DQTLELTYGHRYGLIAQNGSGKSTLLKCVAAR 155
                 5568888999999**************99865 PP

  == domain 2    score: 26.7 bits;  conditional E-value: 1.2e-08
   TIGR01184 106 eaadkrpeqlsggmkqrvaiaralsirpklllldepfgald 146
                 +  +k ++++sgg + rva+a+al ++p ll+ldep   ld
  MMETSP1137-20121227|6640_1 243 KMMQKATKDMSGGWRMRVALAQALFVKPMLLVLDEPTNHLD 283
                 5678999*****************************99998 PP

  == domain 3    score: 10.1 bits;  conditional E-value: 0.0015
   TIGR01184   5 dleikkgefislighsgcgkstllnliaglekptsgavi 43 
                 ++ i     i+l+g  g gkstll l+    +pt+g ++
  MMETSP1137-20121227|6640_1 441 EFGIDCDSRIALVGPNGAGKSTLLKLMLQEIEPTEGEIR 479
                 5566667789*****************99999**99886 PP

  == domain 4    score: 7.3 bits;  conditional E-value: 0.011
   TIGR01184 109 dkrpeqlsggmkqrvaiaralsirpklllldepfgaldaltreelqekllkiveearvtvlmvthd 174
                    ++ ls g++ r+         p+lllldep   ld     ++ + l   ++  +  v++v+hd
  MMETSP1137-20121227|6640_1 544 TNLIKTLSPGFRARLVFCLMSLRNPHLLLLDEPTNPLDM----DMIDSLALAIKSFNGGVVLVSHD 605
                 445788999*****9988766667***********9996....44444444455555666666666 PP

>> TIGR02633  xylG: D-xylose ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.0   0.0   0.00069     0.045      18      53 ..     123     159 ..     114     198 .. 0.82
   2 !   18.8   0.0   1.5e-06   9.5e-05     401     439 ..     249     287 ..     212     316 .. 0.88
   3 !    9.1   0.0    0.0013     0.085      21      52 ..     441     473 ..     432     497 .. 0.81
   4 !    9.5   0.0   0.00097     0.063     401     437 ..     547     583 ..     533     624 .. 0.83

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 0.00069
   TIGR02633  18 dnidlklraGeivslcGenGaGkstlmkvlsg.vyph 53 
                 ++ +l+l  G   +l  +nG+Gkstl+k +++ + p 
  MMETSP1137-20121227|6640_1 123 EDQTLELTYGHRYGLIAQNGSGKSTLLKCVAArMVPI 159
                 566799999*******************887524555 PP

  == domain 2    score: 18.8 bits;  conditional E-value: 1.5e-06
   TIGR02633 401 iarlsGGnqqkavlakllllnprvlildeptrGvdvGak 439
                    +sGG + +  la+ l ++p +l+ldept  +d+Ga 
  MMETSP1137-20121227|6640_1 249 TKDMSGGWRMRVALAQALFVKPMLLVLDEPTNHLDLGAC 287
                 5678999999*************************9996 PP

  == domain 3    score: 9.1 bits;  conditional E-value: 0.0013
   TIGR02633  21 dlklraGeivslcGenGaGkstlmkv.lsgvyp 52 
                 ++ ++    ++l G nGaGkstl+k+ l  + p
  MMETSP1137-20121227|6640_1 441 EFGIDCDSRIALVGPNGAGKSTLLKLmLQEIEP 473
                 55566677799**************72455666 PP

  == domain 4    score: 9.5 bits;  conditional E-value: 0.00097
   TIGR02633 401 iarlsGGnqqkavlakllllnprvlildeptrGvdvG 437
                 i +ls G + + v++ + l np++l+ldept  +d+ 
  MMETSP1137-20121227|6640_1 547 IKTLSPGFRARLVFCLMSLRNPHLLLLDEPTNPLDMD 583
                 7899****************************99985 PP

>> TIGR00954  3a01203: peroxysomal long chain fatty acyl transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.0   1.8e-06   0.00012     422     613 ..      76     281 ..      57     296 .. 0.74
   2 !   13.8   0.0   4.8e-05    0.0031     464     513 ..     432     482 ..     417     488 .. 0.81
   3 !    9.4   0.0     0.001     0.066     582     640 ..     548     606 ..     537     611 .. 0.91

  Alignments for each domain:
  == domain 1    score: 18.5 bits;  conditional E-value: 1.8e-06
   TIGR00954 422 prveekesaeeesrkselvagrgkveaqdngikfeniplvtPegdvlieeLsfevksGnhlLiiGPnGcGKsslfRilgelWPvygglltkpeegklFyvPqrPYmslgtlRdqiiYPdssed.fker.........glsdkdLeqiLeevkLed..lleregg.........wdavqdWkdvLsgGekqRiamARlfyHkPkfavLDEctsA 613
                 +++ +k  +ee+++k    +g    +++   +k+e   +    g+ l e+ ++e+  G+   +i  nG GKs l + ++      + +  +pe   ++++      s ++  d +i   + e+   e+         g +d  Le i e+++  d    e+  g          +++q     +sgG + R+a+A  ++ kP   vLDE t+ 
  MMETSP1137-20121227|6640_1  76 AEDLDKLTMEEGTHKLAVCTGVLASRKDSRDVKIESFSISL-FGQQLFEDQTLELTYGHRYGLIAQNGSGKSTLLKCVA------ARMVPIPEFIDIWFLDREAQPSDKSAVDVVIDTVRLEKeRLEKleedimcesGPEDPRLESIYEKLDKMDpsTFEKRAGellfglgfsQKMMQKATKDMSGGWRMRVALAQALFVKPMLLVLDEPTNH 281
                 23333333334344444444444445666778999887654.69999**************99**********998764......56677899999999999999999999999997766543133347778888888999999999887765432244555557999999777899999*******************************96 PP

  == domain 2    score: 13.8 bits;  conditional E-value: 4.8e-05
   TIGR00954 464 egdvlieeLsfevksGnhlLiiGPnGcGKsslfR.ilgelWPvygglltkp 513
                 + d l  +L+f +   + + ++GPnG GKs l + +l e+ P+ g  +  p
  MMETSP1137-20121227|6640_1 432 KEDYLYTNLEFGIDCDSRIALVGPNGAGKSTLLKlMLQEIEPTEGEIRRNP 482
                 56789999***********************99835789999988766655 PP

  == domain 3    score: 9.4 bits;  conditional E-value: 0.001
   TIGR00954 582 dvLsgGekqRiamARlfyHkPkfavLDEctsAvsvdvEdklyelakevgitllsvshrk 640
                   Ls G + R+ +  +    P+  +LDE t+ + +d+ d l  ++k+++  ++ vsh  
  MMETSP1137-20121227|6640_1 548 KTLSPGFRARLVFCLMSLRNPHLLLLDEPTNPLDMDMIDSLALAIKSFNGGVVLVSHDF 606
                 689*********************************************99999999965 PP

>> TIGR02323  CP_lyasePhnK: phosphonate C-P lyase system protein PhnK
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.0   6.4e-05    0.0042      24      54 ..     129     159 ..     109     178 .. 0.82
   2 !    8.9   0.0    0.0032      0.21     140     171 ..     250     282 ..     240     290 .. 0.86
   3 !   13.7   0.0   0.00011    0.0072       2      60 ..     417     480 ..     416     496 .. 0.82
   4 ?    1.9   0.0      0.43        28     139     197 ..     547     604 ..     528     624 .. 0.73

  Alignments for each domain:
  == domain 1    score: 14.4 bits;  conditional E-value: 6.4e-05
   TIGR02323  24 lypGevlgivGesGsGkstllkalaarllad 54 
                 l  G+  g++ + GsGkstllk++aar+++ 
  MMETSP1137-20121227|6640_1 129 LTYGHRYGLIAQNGSGKSTLLKCVAARMVPI 159
                 556888899******************9874 PP

  == domain 2    score: 8.9 bits;  conditional E-value: 0.0032
   TIGR02323 140 aafsGGmqqrlqiarnlvtrprlvfm.eptGGl 171
                 + +sGG + r+ +a++l  +p l+++ ept  l
  MMETSP1137-20121227|6640_1 250 KDMSGGWRMRVALAQALFVKPMLLVLdEPTNHL 282
                 679*******************98888**9866 PP

  == domain 3    score: 13.7 bits;  conditional E-value: 0.00011
   TIGR02323   2 pllevselsksygskkg....crvsf.lypGevlgivGesGsGkstllkalaarlladaGevty 60 
                 p+l  +++s  y++kk      +++f +     +++vG  G+Gkstllk + +++ +++Ge++ 
  MMETSP1137-20121227|6640_1 417 PVLAFQNVSFAYSGKKEdylyTNLEFgIDCDSRIALVGPNGAGKSTLLKLMLQEIEPTEGEIRR 480
                 6788888888888877533223578888888999**************************9975 PP

  == domain 4    score: 1.9 bits;  conditional E-value: 0.43
   TIGR02323 139 paafsGGmqqrlqiarnlvtrprlvfm.eptGGl.vsvqarllllrglvrelglaviivth 197
                  +++s G++ rl      + +p+l+++ ept  l + +   l l    ++ ++  v++v+h
  MMETSP1137-20121227|6640_1 547 IKTLSPGFRARLVFCLMSLRNPHLLLLdEPTNPLdMDMIDSLAL---AIKSFNGGVVLVSH 604
                 578999********99999*****9999***9885544444433...24555566666666 PP

>> TIGR01192  chvA: glucan exporter ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.0   3.7e-05    0.0024     469     506 ..     249     286 ..     116     298 .. 0.86
   2 !   21.7   0.0   2.2e-07   1.4e-05     335     392 ..     419     478 ..     412     482 .. 0.89
   3 ?    4.3   0.0     0.042       2.7     471     506 ..     549     584 ..     538     607 .. 0.87

  Alignments for each domain:
  == domain 1    score: 14.3 bits;  conditional E-value: 3.7e-05
   TIGR01192 469 gnrlsggerqrlaiarailknapilvldeatsaldvet 506
                  + +sgg r r+a+a+a++    +lvlde t  ld+ +
  MMETSP1137-20121227|6640_1 249 TKDMSGGWRMRVALAQALFVKPMLLVLDEPTNHLDLGA 286
                 5679******************************9865 PP

  == domain 2    score: 21.7 bits;  conditional E-value: 2.2e-07
   TIGR01192 335 vefrdisfefanssqg..vrdvsfeakagqtvaivgptgagkttlinllqrvydpksgqi 392
                 + f+++sf ++  ++     ++ f +     +a+vgp gagk+tl+ l+ +  +p++g+i
  MMETSP1137-20121227|6640_1 419 LAFQNVSFAYSGKKEDylYTNLEFGIDCDSRIALVGPNGAGKSTLLKLMLQEIEPTEGEI 478
                 5799****99988876225799**************************99999*****98 PP

  == domain 3    score: 4.3 bits;  conditional E-value: 0.042
   TIGR01192 471 rlsggerqrlaiarailknapilvldeatsaldvet 506
                  ls g r rl      l+n  +l+lde t  ld++ 
  MMETSP1137-20121227|6640_1 549 TLSPGFRARLVFCLMSLRNPHLLLLDEPTNPLDMDM 584
                 6999*****************************986 PP

>> TIGR01271  CFTR_protein: cystic fibrosis transmembrane conductor regulator (CFTR)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.6   0.0     0.007      0.45    1231    1265 ..     118     152 ..     100     165 .. 0.87
   2 !   12.3   0.0   6.8e-05    0.0044     548     624 ..     251     333 ..     241     345 .. 0.69
   3 !   16.7   0.0     3e-06    0.0002     443     491 ..     438     486 ..     418     584 .. 0.73

  Alignments for each domain:
  == domain 1    score: 5.6 bits;  conditional E-value: 0.007
   TIGR01271 1231 gravlqdlsfsveagqrvgllgrtgsgkstllsal 1265
                  g+ +++d ++ +  g r gl+ + gsgkstll ++
  MMETSP1137-20121227|6640_1  118 GQQLFEDQTLELTYGHRYGLIAQNGSGKSTLLKCV 152 
                  78889999999********************9865 PP

  == domain 2    score: 12.3 bits;  conditional E-value: 6.8e-05
   TIGR01271 548 tlsggqrarislaravykdadlylldspfsyldvvtekeifesclck.....ll.anktril..vtsklehlkkadkilllhegs 624
                  +sgg r r++la+a++    l +ld p ++ld+ +    +e  l k     ll +  +  l  v sk+ hl   dk l+l+ g+
  MMETSP1137-20121227|6640_1 251 DMSGGWRMRVALAQALFVKPMLLVLDEPTNHLDLGACV-WLEDYLSKwdsilLLtSHSADFLngVCSKIYHLT-VDKRLMLYGGN 333
                 68*******************************75432.2222222211111341334444455789999985.68888888776 PP

  == domain 3    score: 16.7 bits;  conditional E-value: 3e-06
   TIGR01271 443 knislklekgqllavagstgsgkssllmmilgelepsegkikhsgrisf 491
                  n+++ ++    +a+ g  g+gks+ll ++l e+ep+eg i+    + f
  MMETSP1137-20121227|6640_1 438 TNLEFGIDCDSRIALVGPNGAGKSTLLKLMLQEIEPTEGEIRRNPHLRF 486
                 5777777888888888888888888888888888888888887766655 PP

>> TIGR03415  ABC_choXWV_ATP: choline ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   0.0     0.017       1.1      42      71 ..     124     153 ..     118     160 .. 0.85
   2 !   16.2   0.0   1.3e-05   0.00083     156     197 ..     243     284 ..     219     307 .. 0.79
   3 ?   -0.3   0.0       1.4        89      54      69 ..     451     466 ..     441     478 .. 0.87
   4 ?    4.8   0.0     0.039       2.5     158     239 ..     543     620 ..     510     650 .. 0.78

  Alignments for each domain:
  == domain 1    score: 5.9 bits;  conditional E-value: 0.017
   TIGR03415  42 dasldveeGeilvlmGlsGsGkssllravn 71 
                 d +l+++ G    l+   GsGks+ll++v 
  MMETSP1137-20121227|6640_1 124 DQTLELTYGHRYGLIAQNGSGKSTLLKCVA 153
                 66788888999999999***********96 PP

  == domain 2    score: 16.2 bits;  conditional E-value: 1.3e-05
   TIGR03415 156 eWadkkvgelsGGmqqrvGlarafateadillmdePfsaldP 197
                 +  +k ++++sGG + rv la+a+ ++  +l++deP   ld 
  MMETSP1137-20121227|6640_1 243 KMMQKATKDMSGGWRMRVALAQALFVKPMLLVLDEPTNHLDL 284
                 456778899****************************99996 PP

  == domain 3    score: -0.3 bits;  conditional E-value: 1.4
   TIGR03415  54 vlmGlsGsGkssllra 69 
                  l+G  G+Gks+ll+ 
  MMETSP1137-20121227|6640_1 451 ALVGPNGAGKSTLLKL 466
                 68999********985 PP

  == domain 4    score: 4.8 bits;  conditional E-value: 0.039
   TIGR03415 158 adkkvgelsGGmqqrvGlarafateadillmdePfsaldPliraklqdellelqkklkktivfvshdldealklGnriaime 239
                 +++ ++ ls G + r+ +      +  +ll+deP   ld      + d l    k ++  +v+vshd+    ++ ++i + e
  MMETSP1137-20121227|6640_1 543 QTNLIKTLSPGFRARLVFCLMSLRNPHLLLLDEPTNPLDM----DMIDSLALAIKSFNGGVVLVSHDFRLLEQVAENIWVCE 620
                 5566778899999998888887888899******999994....6678887778899**********876666666666655 PP

>> TIGR00957  MRP_assoc_pro: multi drug resistance-associated protein (MRP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.7   0.0    0.0016      0.11    1419    1455 ..     249     285 ..     241     326 .. 0.87
   2 !   10.9   0.0   0.00017     0.011     639     695 ..     421     478 ..     375     485 .. 0.70
   3 ?   -2.2   0.0       1.5     1e+02    1422    1465 ..     550     593 ..     547     609 .. 0.73

  Alignments for each domain:
  == domain 1    score: 7.7 bits;  conditional E-value: 0.0016
   TIGR00957 1419 genlsvgqrqlvclarallrktkilvldeataavdle 1455
                   +++s g r  v la+al+ k  +lvlde t  +dl 
  MMETSP1137-20121227|6640_1  249 TKDMSGGWRMRVALAQALFVKPMLLVLDEPTNHLDLG 285 
                  56789999999*******************9999986 PP

  == domain 2    score: 10.9 bits;  conditional E-value: 0.00017
   TIGR00957 639 vknatftwardepp.tlngltlsipegalvavvgqvgcgkssllsallaemdkvegkv 695
                  +n +f+++ ++      +l++ i   + +a+vg+ g gks+ll  +l e++  eg++
  MMETSP1137-20121227|6640_1 421 FQNVSFAYSGKKEDyLYTNLEFGIDCDSRIALVGPNGAGKSTLLKLMLQEIEPTEGEI 478
                 4455555553333303345667777777777777777777777777777777777765 PP

  == domain 3    score: -2.2 bits;  conditional E-value: 1.5
   TIGR00957 1422 lsvgqrqlvclarallrktkilvldeataavdletdnliqstir 1465
                  ls g r  + ++   lr+ ++l+lde t  +d++  + +  +i+
  MMETSP1137-20121227|6640_1  550 LSPGFRARLVFCLMSLRNPHLLLLDEPTNPLDMDMIDSLALAIK 593 
                  6667776666666789****************998776666665 PP

>> TIGR01257  rim_protein: rim ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.0   0.0   0.00021     0.014    2046    2140 ..     226     318 ..     200     331 .. 0.75
   2 !    5.5   0.0    0.0047      0.31    2050    2135 ..     526     611 ..     417     633 .. 0.60

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 0.00021
   TIGR01257 2046 eiekvanwsikslglslya.drlagtysggnkrklstaialigcpplvlldepttgmdpqarrmlwntivsiiregravvltshsmeecealctrl 2140
                    ek a   +  lg+s    ++ +   sgg + +++ a al   p l++ldept  +d  a   l + +    + +  ++ltshs +  + +c+++
  MMETSP1137-20121227|6640_1  226 TFEKRAGELLFGLGFSQKMmQKATKDMSGGWRMRVALAQALFVKPMLLVLDEPTNHLDLGACVWLEDYL---SKWDSILLLTSHSADFLNGVCSKI 318 
                  556666666666676655413444568999999999999999999999999999999999877666543...466788899999999999999876 PP

  == domain 2    score: 5.5 bits;  conditional E-value: 0.0047
   TIGR01257 2050 vanwsikslglslyadr...lagtysggnkrklstaialigcpplvlldepttgmdpqarrmlwntivsiiregravvltshsmeecea 2135
                  v +w  k   + +  d+   l  t s g + +l  ++  +  p l+lldept  +d +   m+    ++i   +  vvl sh +   e 
  MMETSP1137-20121227|6640_1  526 VPEWRAKLGIFGVTGDKqtnLIKTLSPGFRARLVFCLMSLRNPHLLLLDEPTNPLDMD---MIDSLALAIKSFNGGVVLVSHDFRLLEQ 611 
                  56666554333444443222788999999999999999999999*******9888865...7777777787888899999998766555 PP

>> TIGR01194  cyc_pep_trnsptr: cyclic peptide transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.0      0.67        44     372     389 ..     137     154 ..     123     167 .. 0.80
   2 ?    0.6   0.0      0.53        34     466     496 ..     248     278 ..     224     285 .. 0.85
   3 !   13.5   0.0   6.4e-05    0.0041     359     399 ..     439     479 ..     418     609 .. 0.87

  Alignments for each domain:
  == domain 1    score: 0.2 bits;  conditional E-value: 0.67
   TIGR01194 372 ivGenGcGkstliklllG 389
                 ++ +nG Gkstl+k +  
  MMETSP1137-20121227|6640_1 137 LIAQNGSGKSTLLKCVAA 154
                 7889**********8766 PP

  == domain 2    score: 0.6 bits;  conditional E-value: 0.53
   TIGR01194 466 tttdlstGqrkrlalvnayleerpvllldew 496
                 +t d+s G r r+al  a + +  +l+lde 
  MMETSP1137-20121227|6640_1 248 ATKDMSGGWRMRVALAQALFVKPMLLVLDEP 278
                 589***************9999889999996 PP

  == domain 3    score: 13.5 bits;  conditional E-value: 6.4e-05
   TIGR01194 359 pidlriasGelvyivGenGcGkstliklllGlyipqeGell 399
                  +++ i     + +vG nG Gkstl+kl+l    p eGe+ 
  MMETSP1137-20121227|6640_1 439 NLEFGIDCDSRIALVGPNGAGKSTLLKLMLQEIEPTEGEIR 479
                 56666777777889*************************96 PP

>> TIGR00956  3a01205: pleiotropic drug resistance family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.4      0.08       5.2     770     813 ..     113     156 ..       5     159 .. 0.56
   2 !    5.5   0.0    0.0085      0.55     210     243 ..     252     285 ..     233     334 .. 0.74
   3 ?    4.0   0.0     0.024       1.5     757     812 ..     416     470 ..     335     493 .. 0.64
   4 ?   -1.6   0.0       1.2        77     915     935 ..     563     582 ..     545     595 .. 0.72

  Alignments for each domain:
  == domain 1    score: 2.3 bits;  conditional E-value: 0.08
   TIGR00956 770 kikkekrvlLdevdGwvkPGkltALmGasGAGkttLlnvLaeRv 813
                  i+   ++l ++ +  +  G+   L+ + G Gk tLl ++a R+
  MMETSP1137-20121227|6640_1 113 SISLFGQQLFEDQTLELTYGHRYGLIAQNGSGKSTLLKCVAARM 156
                 33444456666666667777788899999999999999999985 PP

  == domain 2    score: 5.5 bits;  conditional E-value: 0.0085
   TIGR00956 210 vsGGerkRvsiaevlvakakiqcwDnatrGLDsa 243
                 +sGG r Rv++a +l +k++++++D+ t  LD  
  MMETSP1137-20121227|6640_1 252 MSGGWRMRVALAQALFVKPMLLVLDEPTNHLDLG 285
                 6777777777777777777777777777777754 PP

  == domain 3    score: 4.0 bits;  conditional E-value: 0.024
   TIGR00956 757 eeifewrdltyevkikkekrvlLdevdGwvkPGkltALmGasGAGkttLlnvLaeR 812
                   +  ++++++    kke+  l  +++  +   +  AL+G  GAGk tLl  + + 
  MMETSP1137-20121227|6640_1 416 PPVLAFQNVSFAYSGKKEDY-LYTNLEFGIDCDSRIALVGPNGAGKSTLLKLMLQE 470
                 55677777777777777764.5566666666667789************9987654 PP

  == domain 4    score: -1.6 bits;  conditional E-value: 1.2
   TIGR00956 915 eLvAkPklllFlDePtsGLDs 935
                     +P  ll lDePt  LD 
  MMETSP1137-20121227|6640_1 563 MSLRNP-HLLLLDEPTNPLDM 582
                 445577.67789999999996 PP

>> TIGR02546  III_secr_ATP: type III secretion apparatus H+-transporting two-sector ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.6   0.0   0.00054     0.035     138     167 ..     124     153 ..     119     157 .. 0.88
   2 ?    1.7   0.0      0.28        18     147     169 ..     448     470 ..     442     475 .. 0.85

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 0.00054
   TIGR02546 138 DglltvgeGqRiGifaeaGvGkstLlsmia 167
                 D  l ++ G R G+ a+ G+GkstLl+ +a
  MMETSP1137-20121227|6640_1 124 DQTLELTYGHRYGLIAQNGSGKSTLLKCVA 153
                 56678899******************9887 PP

  == domain 2    score: 1.7 bits;  conditional E-value: 0.28
   TIGR02546 147 qRiGifaeaGvGkstLlsmiarg 169
                  Ri + +  G+GkstLl+ + ++
  MMETSP1137-20121227|6640_1 448 SRIALVGPNGAGKSTLLKLMLQE 470
                 5999999**********988765 PP

>> TIGR00231  small_GTP: small GTP-binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.0      0.21        14       7      21 ..     136     150 ..     130     159 .. 0.85
   2 !    9.5   0.0    0.0026      0.17       4      25 ..     448     469 ..     445     477 .. 0.86

  Alignments for each domain:
  == domain 1    score: 3.3 bits;  conditional E-value: 0.21
   TIGR00231   7 vivGhvdvGKstLln 21 
                 +++++ ++GKstLl+
  MMETSP1137-20121227|6640_1 136 GLIAQNGSGKSTLLK 150
                 899**********97 PP

  == domain 2    score: 9.5 bits;  conditional E-value: 0.0026
   TIGR00231   4 ikivivGhvdvGKstLlnsllk 25 
                  +i++vG  ++GKstLl+ +l+
  MMETSP1137-20121227|6640_1 448 SRIALVGPNGAGKSTLLKLMLQ 469
                 589**************98876 PP

>> TIGR03496  FliI_clade1: flagellar protein export ATPase FliI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.3   0.0    0.0015     0.098     130     158 ..     125     153 ..     118     158 .. 0.88
   2 ?    2.5   0.0      0.17        11     139     160 ..     449     470 ..     442     474 .. 0.88

  Alignments for each domain:
  == domain 1    score: 9.3 bits;  conditional E-value: 0.0015
   TIGR03496 130 alltvgkGqrlglfagsGvGKsvLlgmla 158
                 + l ++ G r gl+a  G GKs+Ll  +a
  MMETSP1137-20121227|6640_1 125 QTLELTYGHRYGLIAQNGSGKSTLLKCVA 153
                 6688999******************9887 PP

  == domain 2    score: 2.5 bits;  conditional E-value: 0.17
   TIGR03496 139 rlglfagsGvGKsvLlgmlara 160
                 r++l+   G GKs+Ll  + ++
  MMETSP1137-20121227|6640_1 449 RIALVGPNGAGKSTLLKLMLQE 470
                 999**************99775 PP

>> TIGR03015  pepcterm_ATPase: putative secretion ATPase, PEP-CTERM locus subfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.1       7.9   5.1e+02      67     104 ..      28      65 ..      18      84 .. 0.68
   2 !   11.4   0.0    0.0005     0.033      18      69 ..     423     473 ..     415     479 .. 0.86

  Alignments for each domain:
  == domain 1    score: -2.3 bits;  conditional E-value: 7.9
   TIGR03015  67 leaekvvlaklvntkvdaedllrmvaadfGletegrdk 104
                 +  +kv +a    + +d+e++ +mvaa+   + ++++k
  MMETSP1137-20121227|6640_1  28 KAMKKVAAAAEAGAPMDEEEVAAMVAAEAEKKLAKKEK 65 
                 44566666666777777777777777765555554444 PP

  == domain 2    score: 11.4 bits;  conditional E-value: 0.0005
   TIGR03015  18 dPeflygskahkralayleyGlsereGfilitGevGaGkttlvrnllkklea 69 
                 + +f y+ k+     + le+G+  +   i + G  GaGk tl++ +l++ e+
  MMETSP1137-20121227|6640_1 423 NVSFAYSGKKEDYLYTNLEFGIDCD-SRIALVGPNGAGKSTLLKLMLQEIEP 473
                 568999999999999*******765.5688889**************99875 PP

>> TIGR02322  phosphon_PhnN: phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.0       1.2        76       7      26 ..     138     157 ..     133     179 .. 0.85
   2 ?    9.2   0.0    0.0029      0.19       4      25 ..     450     471 ..     448     480 .. 0.84

  Alignments for each domain:
  == domain 1    score: 0.8 bits;  conditional E-value: 1.2
   TIGR02322   7 vGpsGaGKDtlldlararla 26 
                 +   G+GK tll+ ++ar+ 
  MMETSP1137-20121227|6640_1 138 IAQNGSGKSTLLKCVAARMV 157
                 6678*********9988875 PP

  == domain 2    score: 9.2 bits;  conditional E-value: 0.0029
   TIGR02322   4 ilvvGpsGaGKDtlldlararl 25 
                 i++vGp GaGK tll+l  +++
  MMETSP1137-20121227|6640_1 450 IALVGPNGAGKSTLLKLMLQEI 471
                 789************9876665 PP

>> TIGR00630  uvra: excinuclease ABC subunit A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0       6.8   4.4e+02     640     654 ..     139     153 ..     106     158 .. 0.76
   2 ?   -0.2   0.1      0.66        43     193     220 ..     175     202 ..     162     208 .. 0.88
   3 ?    5.9   0.0    0.0097      0.63     811     862 ..     234     282 ..     212     290 .. 0.65
   4 ?    0.2   0.0      0.53        34     625     657 ..     439     471 ..     425     491 .. 0.80
   5 ?    0.4   0.0      0.46        30     849     893 ..     567     608 ..     545     616 .. 0.74

  Alignments for each domain:
  == domain 1    score: -3.5 bits;  conditional E-value: 6.8
   TIGR00630 640 GvsgsGkstLindiL 654
                    gsGkstL++ + 
  MMETSP1137-20121227|6640_1 139 AQNGSGKSTLLKCVA 153
                 567999999987665 PP

  == domain 2    score: -0.2 bits;  conditional E-value: 0.66
   TIGR00630 193 qkkhtidvvidrlkvkeeerkrlaesve 220
                 + k  +dvvid + +++e  ++l e++ 
  MMETSP1137-20121227|6640_1 175 SDKSAVDVVIDTVRLEKERLEKLEEDIM 202
                 57899*****************999885 PP

  == domain 3    score: 5.9 bits;  conditional E-value: 0.0097
   TIGR00630 811 llvdvGLgYiklGqpattLsGGeaqrvkLakeLskrstgktlyilDePttGL 862
                 ll+ +G+    + ++++ +sGG   rv La+ L  +     l +lDePt  L
  MMETSP1137-20121227|6640_1 234 LLFGLGFSQKMMQKATKDMSGGWRMRVALAQALFVK---PMLLVLDEPTNHL 282
                 444444444444555556677777777777766654...4566777776655 PP

  == domain 4    score: 0.2 bits;  conditional E-value: 0.53
   TIGR00630 625 didvsiplglltvitGvsgsGkstLindiLvka 657
                 +++  i  +  +++ G+ g+GkstL++ +L ++
  MMETSP1137-20121227|6640_1 439 NLEFGIDCDSRIALVGPNGAGKSTLLKLMLQEI 471
                 56666777777889999********99888765 PP

  == domain 5    score: 0.4 bits;  conditional E-value: 0.46
   TIGR00630 849 gktlyilDePttGLhfdDikkLlevlqrlvdkGntvvviehnldv 893
                 +  l +lDePt  L +d i  L   ++++   G  vv++ h++ +
  MMETSP1137-20121227|6640_1 567 NPHLLLLDEPTNPLDMDMIDSLALAIKSFN--G-GVVLVSHDFRL 608
                 456899**************9988888764..2.46667776655 PP

>> TIGR00929  VirB4_CagE: type IV secretion/conjugal transfer ATPase, VirB4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.0      0.03       1.9     444     473 ..     139     169 ..     122     173 .. 0.79
   2 ?    5.9   0.0      0.01      0.67     441     460 ..     451     470 ..     448     476 .. 0.87

  Alignments for each domain:
  == domain 1    score: 4.3 bits;  conditional E-value: 0.03
   TIGR00929 444 GptgsGKTvllnfllaqlqkykp.ltiiafD 473
                  ++gsGK++ll+ ++a +    + ++i ++D
  MMETSP1137-20121227|6640_1 139 AQNGSGKSTLLKCVAARMVPIPEfIDIWFLD 169
                 589*************997555455555555 PP

  == domain 2    score: 5.9 bits;  conditional E-value: 0.01
   TIGR00929 441 lIfGptgsGKTvllnfllaq 460
                 +++Gp+g+GK++ll+++l +
  MMETSP1137-20121227|6640_1 451 ALVGPNGAGKSTLLKLMLQE 470
                 579************99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (656 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       482  (0.117504); expected 82.0 (0.02)
Passed bias filter:                      290  (0.0706972); expected 82.0 (0.02)
Passed Vit filter:                       111  (0.02706); expected 4.1 (0.001)
Passed Fwd filter:                        64  (0.0156021); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              63  [number of targets reported over threshold]
# CPU time: 1.77u 0.21s 00:00:01.98 Elapsed: 00:00:01.38
# Mc/sec: 627.43
//
Query:       MMETSP1137-20121227|6641_1  [L=464]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (464 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       184  (0.0448562); expected 82.0 (0.02)
Passed bias filter:                      110  (0.0268162); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.16s 00:00:00.55 Elapsed: 00:00:00.51
# Mc/sec: 1200.84
//
Query:       MMETSP1137-20121227|6642_1  [L=528]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.3e-22   75.9  13.1    4.7e-05   20.5   0.0    6.0  6  TIGR00435 cysS: cysteine--tRNA ligase
  ------ inclusion threshold ------
       0.03   12.4   1.8       0.62    8.2   0.0    3.6  4  TIGR00756 PPR: pentatricopeptide repeat domain


Domain annotation for each model (and alignments):
>> TIGR00435  cysS: cysteine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.1   4.2e-08   8.5e-05     416     457 ..      78     120 ..      60     126 .. 0.83
   2 !   20.5   0.0   2.3e-08   4.7e-05     415     457 ..     165     207 ..     150     214 .. 0.88
   3 !   13.6   0.0   2.7e-06    0.0055     418     457 ..     266     305 ..     253     311 .. 0.88
   4 !    7.4   0.2   0.00022      0.44     415     458 ..     347     390 ..     330     396 .. 0.85
   5 !   11.4   0.0   1.3e-05     0.027     420     459 ..     418     457 ..     399     463 .. 0.85
   6 !    7.4   0.1   0.00021      0.43     418     458 ..     480     521 ..     470     527 .. 0.73

  Alignments for each domain:
  == domain 1    score: 19.6 bits;  conditional E-value: 4.2e-08
   TIGR00435 416 delgeledlieersearkkkelkkaDkiRdell.kkgivLeDt 457
                  +++ +edli++r+e+r +++++ aD+iRdel+ ++g+v+ D+
  MMETSP1137-20121227|6642_1  78 VDVATVEDLIKQRAELRMQRDFDGADAIRDELKfQMGVVVSDR 120
                 46789***************************75789999998 PP

  == domain 2    score: 20.5 bits;  conditional E-value: 2.3e-08
   TIGR00435 415 ddelgeledlieersearkkkelkkaDkiRdellkkgivLeDt 457
                 + +++++e+li+er+ +r++++++ aD+iRdel+ +g+++ D+
  MMETSP1137-20121227|6642_1 165 EIDVAHVEALIAERTALRRERDFNGADAIRDELKMLGVAVFDR 207
                 446889*********************************9998 PP

  == domain 3    score: 13.6 bits;  conditional E-value: 2.7e-06
   TIGR00435 418 lgeledlieersearkkkelkkaDkiRdellkkgivLeDt 457
                 ++ +++li+er++ r ++e+++aD+iR +l++ g+ ++D+
  MMETSP1137-20121227|6642_1 266 EAYVQALITERNDYRSTREYNEADAIRAKLTDIGVWVDDR 305
                 567899******************************9998 PP

  == domain 4    score: 7.4 bits;  conditional E-value: 0.00022
   TIGR00435 415 ddelgeledlieersearkkkelkkaDkiRdellkkgivLeDtp 458
                  + l+++++l+++r e + ++++++aD++ de++++g+ ++D +
  MMETSP1137-20121227|6642_1 347 AEFLEKVNELLRKRLESKLSRDFDRADALLDEIKEMGVEVNDGR 390
                 446788999999***************************99975 PP

  == domain 5    score: 11.4 bits;  conditional E-value: 1.3e-05
   TIGR00435 420 eledlieersearkkkelkkaDkiRdellkkgivLeDtpn 459
                  + +l+ er++ark ++++ aD+i  el ++g+ ++D ++
  MMETSP1137-20121227|6642_1 418 RVLQLLSERADARKVRDYETADAIAAELSEMGVSIDDAKR 457
                 5678999****************************99865 PP

  == domain 6    score: 7.4 bits;  conditional E-value: 0.00021
   TIGR00435 418 lgeledlieersearkkkelkkaDkiRdellk.kgivLeDtp 458
                 ++++ +l+++r e + k+++++aD+i + l + +g+ L++++
  MMETSP1137-20121227|6642_1 480 EDKVMELLTQRDEFKSKRDYDAADEIQNILRNdMGVFLDNRK 521
                 3344555556********************872567776664 PP

>> TIGR00756  PPR: pentatricopeptide repeat domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0      0.47   9.7e+02      13      29 ..      96     112 ..      93     118 .. 0.77
   2 ?   -0.2   0.0      0.14   2.9e+02       9      31 ..     180     202 ..     179     204 .. 0.85
   3 ?    8.2   0.0    0.0003      0.62      14      34 ..     367     387 ..     365     388 .. 0.93
   4 ?   -0.0   0.0      0.12   2.5e+02      12      34 ..     431     453 ..     430     454 .. 0.90

  Alignments for each domain:
  == domain 1    score: -1.8 bits;  conditional E-value: 0.47
   TIGR00756  13 agrveeAlelfdeMker 29 
                 +++++ A  + de+k +
  MMETSP1137-20121227|6642_1  96 QRDFDGADAIRDELKFQ 112
                 799****9999998765 PP

  == domain 2    score: -0.2 bits;  conditional E-value: 0.14
   TIGR00756   9 glckagrveeAlelfdeMkergi 31 
                 +l ++++++ A  + de+k  g+
  MMETSP1137-20121227|6642_1 180 ALRRERDFNGADAIRDELKMLGV 202
                 67899*********999987775 PP

  == domain 3    score: 8.2 bits;  conditional E-value: 0.0003
   TIGR00756  14 grveeAlelfdeMkergivPd 34 
                 ++++ A  l+de+ke+g++ +
  MMETSP1137-20121227|6642_1 367 RDFDRADALLDEIKEMGVEVN 387
                 89****************998 PP

  == domain 4    score: -0.0 bits;  conditional E-value: 0.12
   TIGR00756  12 kagrveeAlelfdeMkergivPd 34 
                 k +++e A  +  e+ e+g++ d
  MMETSP1137-20121227|6642_1 431 KVRDYETADAIAAELSEMGVSID 453
                 6799****************988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (528 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       156  (0.0380302); expected 82.0 (0.02)
Passed bias filter:                      121  (0.0294978); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.17s 00:00:00.57 Elapsed: 00:00:00.63
# Mc/sec: 1106.19
//
Query:       MMETSP1137-20121227|6643_1  [L=202]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (202 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       179  (0.0436373); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.14s 00:00:00.35 Elapsed: 00:00:00.28
# Mc/sec: 952.21
//
Query:       MMETSP1137-20121227|6644_1  [L=1022]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   6.8e-223  740.3   0.0   8.7e-223  739.9   0.0    1.0  1  TIGR00763 lon: ATP-dependent protease La
    1.1e-28   98.0   0.1    5.9e-28   95.6   0.0    1.9  2  TIGR02902 spore_lonB: ATP-dependent protease LonB
    1.2e-27   94.6   0.1    1.2e-26   91.3   0.0    2.0  2  TIGR00764 lon_rel: putative ATP-dependent protease
    8.3e-26   88.4   0.1    2.2e-25   87.0   0.0    1.6  2  TIGR02903 spore_lon_C: ATP-dependent protease, Lon family
    4.3e-12   43.0   0.0      6e-12   42.5   0.0    1.1  1  TIGR02653 Lon_rel_chp: conserved hypothetical protein
    8.2e-12   42.4   0.6      2e-10   37.8   0.0    2.1  2  TIGR00416 sms: DNA repair protein RadA
    1.9e-06   24.2   0.0    2.5e-05   20.5   0.0    2.0  2  TIGR02639 ClpA: ATP-dependent Clp protease ATP-binding subunit ClpA
    0.00019   18.2   0.0     0.0007   16.3   0.0    1.8  2  TIGR01241 FtsH_fam: ATP-dependent metallopeptidase HflB
     0.0002   18.3   0.0     0.0007   16.5   0.0    1.9  1  TIGR00635 ruvB: Holliday junction DNA helicase RuvB
    0.00033   17.2   0.0      0.015   11.7   0.0    2.2  2  TIGR00368 TIGR00368: Mg chelatase-like protein
     0.0041   15.0   0.0      0.011   13.5   0.0    1.8  1  TIGR03499 FlhF: flagellar biosynthesis protein FlhF
  ------ inclusion threshold ------
      0.012   11.7   0.0      0.062    9.4   0.0    1.9  2  TIGR03346 chaperone_ClpB: ATP-dependent chaperone protein ClpB
      0.019   11.9   0.0       0.04   10.9   0.0    1.4  1  TIGR01242 26Sp45: 26S proteasome subunit P45 family
      0.019   12.0   0.1      0.031   11.3   0.1    1.2  1  TIGR03265 PhnT2: putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein
       0.02   11.0   0.0      0.035   10.2   0.0    1.3  1  TIGR01243 CDC48: AAA family ATPase, CDC48 subfamily


Domain annotation for each model (and alignments):
>> TIGR00763  lon: ATP-dependent protease La
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  739.9   0.0  3.2e-225  8.7e-223     246     795 .]     277     843 ..     274     843 .. 0.95

  Alignments for each domain:
  == domain 1    score: 739.9 bits;  conditional E-value: 3.2e-225
   TIGR00763 246 eekdkkdelieklkekleelklpeevlkviekeleklelleasssefsvtrnYldwltdlPwgkvskenldlkrakeiLdedHyglkkvKeRilEylavkklrkklkgkilclvGPPGVGKtSlaksiAkalnrkfvrlslGGlkDvaeikGHRrtYvGalPGkiiqglkkvktenPlillDEiDKlg.ssvrGdPasaLLEvLDpeqNakFlDhYldvpiDlskVlfvataNsidtiPepLldRmEvielsgYveeeKleiakkyLipkaleeaglkkeeveisdealkelikkYtreaGVRnLekqiekilRkaalklvee.....kekkk..........eaeeekeeaelkkeekesveideenlkkylgkpvfese..kldeetkvGvvmGLawtsvGGsvlyiEttlvegkkgeleltGqLgdvmkESaqialtyvraileekeien.....kffekadihlHvPeGatpKDGPSAGvtlvtallSllldkkvrkdvamtGEltLtGkvlpigglkeKviaAkrsgiktiilPeknrrdleelpenvkedleillvkeleevlekaf 795
                  + d++ e+ ++l+++l++++lp+e+ +v+ +el++l++++++ se+s++  Yl+w++dlPw+k + e+l+++ a+ + d dHy ++kvK RilE lav +lr+++kg i+c+ GPPG+GKtSl+ksiA al+r f r+slGG++ +ae++GHRrtYvGalPG i+q++kk++ +n +i+lDEiDKlg +s +GdP+saLLEvLDpeqN++F+Dh+l +p+ ls+Vlf+ataN+i+ iP+pL+dRmE+ie+ gY+ eeK++ia+++L++k++e +gl +  +++sde l +li+ YtreaGVR+Le+qi++++R aa kl+ +     +   +          +    +++a +   + + ++i  ++l + lg+p+f++e   + + +k+G + GLaw + GG+vl++E+ +++g kg+++ltGqLgdvm+ESa++al+++ra ++e++++      ++++k+d+h+H+P+Ga++KDGPSAGvt+ tal+S l+++ vr+d+amtGE+tL+G vlp+gg+keKviaA+r+g+++iilPe+n++dl e+p++vk+++++++++++++vl+ a+
  MMETSP1137-20121227|6644_1 277 GDGDEEGEV-AALERRLRSAALPAEADEVATRELKRLRRMSPMHSEYSTLIDYLEWIADLPWNKSTPERLSVAAARAQXD-DHYAMSKVKGRILESLAVCQLRGDTKGSIMCMLGPPGIGKTSLGKSIAAALGRDFYRVSLGGVHSEAEVRGHRRTYVGALPGLILQAMKKCGSNNAVIMLDEIDKLGrNSLNGDPSSALLEVLDPEQNQAFRDHFLALPFNLSRVLFIATANEIEGIPRPLRDRMELIEMHGYTVEEKIQIARRHLLKKQQEVHGLPPGTLTVSDEILDTLISGYTREAGVRELERQIAALCRSAAAKLIAQregadE---TtdtaddhhapANAPAANSAANLGPAMSPMSIGYDELVEALGPPKFDAErdVVARLQKPGTALGLAWMPFGGEVLFVEAEVMRG-KGQVQLTGQLGDVMQESAKAALSWIRAHAAELHLSLlddeeSLLSKRDVHIHFPAGAISKDGPSAGVTITTALVSALTGRLVRADTAMTGEVTLRGVVLPVGGVKEKVIAAHRTGVRRIILPEQNKKDLREMPQTVKDEVTFIFASNVRQVLDAAL 843
                 456777777.9*****************************************************************9987.9**********************************************************************************************************6689*********************************************************************************************************************************99665550...145555555555566677788889999*******************9984468999****************************.*******************************99987777779**************************************************************************************************************9875 PP

>> TIGR02902  spore_lonB: ATP-dependent protease LonB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.0      0.31        84      90     102 ..     386     398 ..     375     405 .. 0.83
   2 !   95.6   0.0   2.1e-30   5.9e-28     342     529 ..     656     841 ..     646     843 .. 0.80

  Alignments for each domain:
  == domain 1    score: -0.6 bits;  conditional E-value: 0.31
   TIGR02902  90 iiyGppGvGktaa 102
                  + GppG+Gkt+ 
  MMETSP1137-20121227|6644_1 386 CMLGPPGIGKTSL 398
                 578********75 PP

  == domain 2    score: 95.6 bits;  conditional E-value: 2.1e-30
   TIGR02902 342 lssepkiGlvnGlavyGpnsGavlevevtaekaenaaGsinvtGiieeeelggsskevkrkssikg.svenvlavlksvldinlkdydihinfpgg.ipvdGpsaGvaiavaiysalkkvpidnkvaltGeislnGlvkpvGGvsskieaakkaGakkviipkenyqevles....lekikvipvknlkevlev 529
                 +++  k G++ Gla + p  G+vl ve+++++    +G++++tG + +  + +s k   + s i++ ++e  l++l +  +  l++ d+hi+fp+g i+ dGpsaGv+i+ a+ sal+ +++ + +a+tGe++l+G v pvGGv++k+ aa+++G++++i+p +n ++  e      +++  i   n+++vl+ 
  MMETSP1137-20121227|6644_1 656 VARLQKPGTALGLAWM-PFGGEVLFVEAEVMRG---KGQVQLTGQLGDV-MQESAKA--ALSWIRAhAAELHLSLLDDE-ESLLSKRDVHIHFPAGaISKDGPSAGVTITTALVSALTGRLVRADTAMTGEVTLRGVVLPVGGVKEKVIAAHRTGVRRIILPEQNKKDLREMpqtvKDEVTFIFASNVRQVLDA 841
                 5666777999999976.6689******999875...599*****98764.4333333..44666662557778888887.888999*******9763789*****************************************************************99876641111345666777777777765 PP

>> TIGR00764  lon_rel: putative ATP-dependent protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.0      0.11        30      41      63 ..     386     408 ..     372     419 .. 0.86
   2 !   91.3   0.0   4.4e-29   1.2e-26     424     595 ..     667     845 ..     653     851 .. 0.89

  Alignments for each domain:
  == domain 1    score: 0.8 bits;  conditional E-value: 0.11
   TIGR00764  41 lliGePGvGksmlakamaellpk 63 
                  ++G PG+Gk+ l+k++a  l +
  MMETSP1137-20121227|6644_1 386 CMLGPPGIGKTSLGKSIAAALGR 408
                 479**************988765 PP

  == domain 2    score: 91.3 bits;  conditional E-value: 4.4e-29
   TIGR00764 424 GlaiiGeqsGivlpieaivapaaskeeGkiivtgklgeiakeavlnvsalikkykge...........diskkdihiqflqtyegveGdsasisvatavisaleeiPvkqdvaltGslsvrGevlpvGGvtekieaaieaGikkviiPksnekdvlle.kekekkieiiPverldevlevalve 595
                 Gla +   +G vl +ea+v     + +G++ +tg+lg++ +e+ + + + i+ + +e            +sk d+hi f       +G sa ++++ta++sal +  v+ d a+tG + +rG vlpvGGv+ek+ aa ++G++++i+P++n+kd+    +  ++++  i  +++ +vl+ al+ 
  MMETSP1137-20121227|6644_1 667 GLAWMP-FGGEVLFVEAEVM----RGKGQVQLTGQLGDVMQESAKAALSWIRAHAAElhlsllddeesLLSKRDVHIHFPAGAISKDGPSAGVTITTALVSALTGRLVRADTAMTGEVTLRGVVLPVGGVKEKVIAAHRTGVRRIILPEQNKKDLREMpQTVKDEVTFIFASNVRQVLDAALMP 845
                 555555.5666666666664....5689************************************998889**********999999********************************************************************97540556889**************99975 PP

>> TIGR02903  spore_lon_C: ATP-dependent protease, Lon family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0      0.73     2e+02     180     191 ..     387     398 ..     383     403 .. 0.82
   2 !   87.0   0.0   8.1e-28   2.2e-25     446     613 ..     662     841 ..     621     843 .. 0.82

  Alignments for each domain:
  == domain 1    score: -2.0 bits;  conditional E-value: 0.73
   TIGR02903 180 lyGppGvGktta 191
                 + GppG+Gkt+ 
  MMETSP1137-20121227|6644_1 387 MLGPPGIGKTSL 398
                 78********86 PP

  == domain 2    score: 87.0 bits;  conditional E-value: 8.1e-28
   TIGR02903 446 vGkvfGlGvsgylGsvleieavafeakekGkGtvrfndtaGsmakdsvfnaasvirkitdk......d.....lkdydihvnviGGG.ridGpsaGaaitlvilsalldkpirqdvaitGeislrGkikpvGGifekiyGakrkgiktvvipeenlkd...vpqglkd.ievkavktieellei 613
                  G   Gl  + + G vl +ea+++    +GkG+v++    G + ++s   a+s ir  + +      d     l++ d+h+    G    dGpsaG +it +++sal+ + +r d a+tGe++lrG + pvGG+ ek+  a+r g++++++pe+n+kd   +pq +kd +  ++++++ ++l+ 
  MMETSP1137-20121227|6644_1 662 PGTALGLAWMPFGGEVLFVEAEVM----RGKGQVQLTGQLGDVMQESAKAALSWIRAHAAElhlsllDdeeslLSKRDVHIHFPAGAiSKDGPSAGVTITTALVSALTGRLVRADTAMTGEVTLRGVVLPVGGVKEKVIAAHRTGVRRIILPEQNKKDlreMPQTVKDeVTFIFASNVRQVLDA 841
                 4778899999999********996....7999********************9999644321111112122336789****986554278*****************************************************************87633379998754888999999999875 PP

>> TIGR02653  Lon_rel_chp: conserved hypothetical protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.5   0.0   2.2e-14     6e-12     514     664 ..     680     835 ..     647     844 .. 0.84

  Alignments for each domain:
  == domain 1    score: 42.5 bits;  conditional E-value: 2.2e-14
   TIGR02653 514 fevqvvaGsGklkvsGlGsetaakesikvafdylkgnlkrisas......akfsekdyhlevvdllntgvsteaslaalialisallkrsvqeqmvilGeltlgGvvkavedlaeslqlaldsGakrvllplssasdiatvpaelfskfqisfysdp 664
                 +e +v+ G+G+ +++G      ++es k a+ ++++++ ++  s      + +s++d h++      ++ +  a++++  al+sal  r v+ ++++ Ge+tl Gvv +v  + e++  a  +G +r++lp ++++d+ ++p  + + +   f s+ 
  MMETSP1137-20121227|6644_1 680 VEAEVMRGKGQVQLTG-QLGDVMQESAKAALSWIRAHAAELHLSllddeeSLLSKRDVHIHFPAGAISKDGPSAGVTITTALVSALTGRLVRADTAMTGEVTLRGVVLPVGGVKEKVIAAHRTGVRRIILPEQNKKDLREMPQTVKDEVTFIFASNV 835
                 799*************.677889***************99877622222256778888998888778888888999999****************************************************************99999998887764 PP

>> TIGR00416  sms: DNA repair protein RadA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.1     0.035       9.6      91     122 ..     379     410 ..     359     433 .. 0.85
   2 !   37.8   0.0   7.2e-13     2e-10     350     436 ..     728     815 ..     704     834 .. 0.89

  Alignments for each domain:
  == domain 1    score: 2.6 bits;  conditional E-value: 0.035
   TIGR00416  91 ivkGsliliGGdPGiGkstlllqvaaqlakns 122
                   kGs++ + G PGiGk+ l   +aa l ++ 
  MMETSP1137-20121227|6644_1 379 DTKGSIMCMLGPPGIGKTSLGKSIAAALGRDF 410
                 579*****************999999888765 PP

  == domain 2    score: 37.8 bits;  conditional E-value: 7.2e-13
   TIGR00416 350 glqlakqdvflnv.aGGvkveepavdlalvialvssfrdrkldqklvilGevglaGeirevssleerlkeaaklGfkkaivPkansdk 436
                 +  l+k+dv+++  aG +  + p++ +++  alvs++  r +  ++++ Gev+l G +++v  ++e++  a + G +++i+P++n+++
  MMETSP1137-20121227|6644_1 728 ESLLSKRDVHIHFpAGAISKDGPSAGVTITTALVSALTGRLVRADTAMTGEVTLRGVVLPVGGVKEKVIAAHRTGVRRIILPEQNKKD 815
                 44699******9757889*****************************************************************99965 PP

>> TIGR02639  ClpA: ATP-dependent Clp protease ATP-binding subunit ClpA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   0.0     9e-08   2.5e-05     485     570 ..     379     463 ..     355     488 .. 0.76
   2 ?    1.4   0.0     0.056        15     677     709 ..     554     585 ..     504     596 .. 0.71

  Alignments for each domain:
  == domain 1    score: 20.5 bits;  conditional E-value: 9e-08
   TIGR02639 485 kPvgsfl.fvGptGvGktelakqLaeelgvellrfDmseymekhtvsrliGsPpGyvGfeeGGlLteavrk..nPyavlLlDeiekahp 570
                    gs + + Gp G+Gkt l k++a++lg ++ r  +      h+ + + G    yvG    Gl+ +a++k  + +av++lDei+k   
  MMETSP1137-20121227|6644_1 379 DTKGSIMcMLGPPGIGKTSLGKSIAAALGRDFYRVSLGG---VHSEAEVRGHRRTYVGAL-PGLILQAMKKcgSNNAVIMLDEIDKLGR 463
                 4555554268************************99875...69999999********76.568889999955579*********9654 PP

  == domain 2    score: 1.4 bits;  conditional E-value: 0.056
   TIGR02639 677 veleleddaikylaekgydeefGarelkrviee 709
                  +l+++d+++  l++ gy++e G+rel+r i+ 
  MMETSP1137-20121227|6644_1 554 GTLTVSDEILDTLIS-GYTREAGVRELERQIAA 585
                 478999999999986.9************9976 PP

>> TIGR01241  FtsH_fam: ATP-dependent metallopeptidase HflB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0   2.6e-06    0.0007      93     166 ..     386     467 ..     378     478 .. 0.69
   2 ?   -1.6   0.0      0.69   1.9e+02     191     212 ..     823     844 ..     816     887 .. 0.88

  Alignments for each domain:
  == domain 1    score: 16.3 bits;  conditional E-value: 2.6e-06
   TIGR01241  93 llvGpPGtGktLlakavaGeagvpffsis.Gsdfvemfv.G.....vGasrvrDlfeqakkna...PciifiDeiDavGrkrga 166
                  ++GpPG Gkt l k++a   g+ f+++s G    e  v G     vGa  +  l  qa k++    ++i++DeiD +Gr+  +
  MMETSP1137-20121227|6644_1 386 CMLGPPGIGKTSLGKSIAAALGRDFYRVSlGGVHSEAEVrGhrrtyVGA--LPGLILQAMKKCgsnNAVIMLDEIDKLGRNSLN 467
                 478************************9854444454442322222333..34566666665411157999********98765 PP

  == domain 2    score: -1.6 bits;  conditional E-value: 0.69
   TIGR01241 191 tnegvivlaatnrpdvLDkaLl 212
                  +++v  + a n  +vLD aL+
  MMETSP1137-20121227|6644_1 823 VKDEVTFIFASNVRQVLDAALM 844
                 578899999************9 PP

>> TIGR00635  ruvB: Holliday junction DNA helicase RuvB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0   2.5e-06    0.0007       5      59 ..     356     411 ..     352     549 .. 0.84

  Alignments for each domain:
  == domain 1    score: 16.5 bits;  conditional E-value: 2.5e-06
   TIGR00635   5 efiGqekvkeklqlfikaakkrkealdhvl.lyGPPGlGkttlakiiakelgvklk 59 
                 ++   +kvk ++  ++  ++ r ++   ++ + GPPG+Gkt+l k ia+ lg +  
  MMETSP1137-20121227|6644_1 356 DHYAMSKVKGRILESLAVCQLRGDTKGSIMcMLGPPGIGKTSLGKSIAAALGRDFY 411
                 566667888888888888999999888776378****************9998764 PP

>> TIGR00368  TIGR00368: Mg chelatase-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.0     0.022       5.9     213     234 ..     384     405 ..     325     409 .. 0.81
   2 !   11.7   0.0   5.6e-05     0.015      57     142 ..     733     816 ..     669     856 .. 0.73

  Alignments for each domain:
  == domain 1    score: 3.1 bits;  conditional E-value: 0.022
   TIGR00368 213 nllllGPPGsGktllakrlqgl 234
                  + +lGPPG Gkt l k + + 
  MMETSP1137-20121227|6644_1 384 IMCMLGPPGIGKTSLGKSIAAA 405
                 46689********999988765 PP

  == domain 2    score: 11.7 bits;  conditional E-value: 5.6e-05
   TIGR00368  57 akrivinlaPadlkkeGgrfdlpiaigilaaseqldakkldeylllgelaldGklravkgvlpaiaaakkselkfiivakenaeea 142
                 ++ + i +    + k+G++  ++i+ +++ a      +   +  + ge++l G +  v gv   ++aa++++++ ii++++n+++ 
  MMETSP1137-20121227|6644_1 733 KRDVHIHFPAGAISKDGPSAGVTITTALVSALTGRLVR--ADTAMTGEVTLRGVVLPVGGVKEKVIAAHRTGVRRIILPEQNKKDL 816
                 55667777667799*********999999876544333..4789**************************************9864 PP

>> TIGR03499  FlhF: flagellar biosynthesis protein FlhF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   0.0   4.1e-05     0.011     158     212 ..     343     396 ..     159     407 .. 0.79

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 4.1e-05
   TIGR03499 158 relleklke.kedaeeareklreaLekklsvkkeedeilekggviaLvGptGvGKT 212
                 ++l   + + + d++ a++k++  + ++l  + ++    +kg ++ ++Gp+G+GKT
  MMETSP1137-20121227|6644_1 343 ERLSVAAARaQXDDHYAMSKVKGRILESL--AVCQLRGDTKGSIMCMLGPPGIGKT 396
                 4444444444899****************..888888888999************9 PP

>> TIGR03346  chaperone_ClpB: ATP-dependent chaperone protein ClpB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   0.0   0.00023     0.062     594     685 ..     380     467 ..     352     483 .. 0.72
   2 ?   -0.6   0.0      0.24        64     789     837 ..     555     602 ..     521     612 .. 0.74

  Alignments for each domain:
  == domain 1    score: 9.4 bits;  conditional E-value: 0.00023
   TIGR03346 594 Pigsfl.flGptGvGktelakalaeflfddeealvridmseymekhsvarliGaPPGyvGyeeGGqlteavrr..kpysvvlldevekahpdvfn 685
                   gs + +lGp G+Gkt l k++a++l      + r+ +      hs a + G    yvG   G  l +a+++     +v++lde++k   + +n
  MMETSP1137-20121227|6644_1 380 TKGSIMcMLGPPGIGKTSLGKSIAAALGR---DFYRVSLG---GVHSEAEVRGHRRTYVGALPGLIL-QAMKKcgSNNAVIMLDEIDKLGRNSLN 467
                 567765379*****************965...57788776...568999999999999998776555.566652346789999999997766655 PP

  == domain 2    score: -0.6 bits;  conditional E-value: 0.24
   TIGR03346 789 elelsdaaldllaeagydPvyGarPlkraiqkelenplakkllagevke 837
                 +l++sd+ ld+l  +gy    G r l r i    +   ak + + e ++
  MMETSP1137-20121227|6644_1 555 TLTVSDEILDTLI-SGYTREAGVRELERQIAALCRSAAAKLIAQREGAD 602
                 7999*******98.69**************9988888777776665544 PP

>> TIGR01242  26Sp45: 26S proteasome subunit P45 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00015      0.04     160     232 ..     386     466 ..     378     474 .. 0.72

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 0.00015
   TIGR01242 160 llyGppGtGktllakavaeetnatfirv....vgsel.v....kkyiGeGarlvrevfklakekapsiifideidaiaakrl 232
                  + GppG Gkt l k++a      f rv    v se  v    + y+G    l+ + +k       ++i++deid ++ + l
  MMETSP1137-20121227|6644_1 386 CMLGPPGIGKTSLGKSIAAALGRDFYRVslggVHSEAeVrghrRTYVGALPGLILQAMKKCGS-NNAVIMLDEIDKLGRNSL 466
                 468************************965555666432222256787777777666665543.456888999998876655 PP

>> TIGR03265  PhnT2: putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.1   0.00011     0.031      28      52 ..     380     404 ..     363     431 .. 0.87

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 0.00011
   TIGR03265  28 kkgelvclLGPsGCGkttLLriiaG 52 
                 +kg ++c+LGP G Gkt+L + ia 
  MMETSP1137-20121227|6644_1 380 TKGSIMCMLGPPGIGKTSLGKSIAA 404
                 5899***************999985 PP

>> TIGR01243  CDC48: AAA family ATPase, CDC48 subfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   0.00013     0.035     216     281 ..     386     459 ..     369     471 .. 0.53

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 0.00013
   TIGR01243 216 llygppgtgktllakavaneagayfiaingpeimsk.........yygeseerlreifkeaeenapsiifideid 281
                  ++gppg gkt l k++a   g  f+ +    + s          y+g     + + +k+   n  ++i++deid
  MMETSP1137-20121227|6644_1 386 CMLGPPGIGKTSLGKSIAAALGRDFYRVSLGGVHSEaevrghrrtYVGALPGLILQAMKKCGSNN-AVIMLDEID 459
                 35577777777777777777776666554332222111111111134433333333334333332.344445554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1022 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       194  (0.047294); expected 82.0 (0.02)
Passed bias filter:                      167  (0.0407118); expected 82.0 (0.02)
Passed Vit filter:                        56  (0.0136519); expected 4.1 (0.001)
Passed Fwd filter:                        15  (0.00365675); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 1.01u 0.18s 00:00:01.19 Elapsed: 00:00:01.06
# Mc/sec: 1272.57
//
Query:       MMETSP1137-20121227|6645_1  [L=260]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (260 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       143  (0.034861); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.13s 00:00:00.36 Elapsed: 00:00:01.31
# Mc/sec: 261.96
//
Query:       MMETSP1137-20121227|6646_1  [L=534]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.5e-80  268.4  17.3    4.8e-42  141.6   7.6    2.1  2  TIGR00927 2A1904: K+-dependent Na+/Ca+ exchanger
    5.6e-68  227.2   1.2    7.7e-68  226.7   0.8    1.2  1  TIGR00367 TIGR00367: K+-dependent Na+/Ca+ exchanger homolog
    8.3e-30  101.1  17.6    3.5e-18   62.6   0.5    3.0  3  TIGR00845 caca: sodium/calcium exchanger 1
    4.9e-09   33.3   5.3    1.6e-08   31.6   3.6    1.8  1  TIGR00846 caca2: calcium/proton exchanger
    4.5e-05   20.6   5.1    4.5e-05   20.6   3.5    2.2  2  TIGR00378 cax: calcium/proton exchanger


Domain annotation for each model (and alignments):
>> TIGR00927  2A1904: K+-dependent Na+/Ca+ exchanger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  141.6   7.6   5.8e-45   4.8e-42     458     603 ..      52     206 ..      49     218 .. 0.91
   2 !  130.8   0.2   1.1e-41   8.7e-39     972    1197 ..     220     429 ..     214     434 .. 0.82

  Alignments for each domain:
  == domain 1    score: 141.6 bits;  conditional E-value: 5.8e-45
   TIGR00927 458 vlhifGmlyvfvalaivcdeyfvpalGvitdklqisedvaGatfmaaGGsapelftsliGvfishsnvGiGtivGsavfnilfviGtcalfs...re...i...lnltwwplfrdvsfyildlimlilffldsliawweslllllayalyvftmk 603
                  + ++G+ y+f  laivcd+yfv +l  i++ l +s dvaGatfmaaG sapelftsl+Gvf  + +vGiGtivGsavfn+  +iG  alf+   +e   +   l + w p+ rd  fy + +  +i  + d  i   e +ll++ ya+yv  m 
  MMETSP1137-20121227|6646_1  52 AMLLWGVFYMFWGLAIVCDDYFVTSLEDISEALSLSPDVAGATFMAAGSSAPELFTSLMGVFAVKNDVGIGTIVGSAVFNLCCIIGGTALFTpmpKEkagVlpgLHIDWKPITRDSIFYFISIFAMIYVLSDGAINLLEGVLLIVFYAIYVAVMA 206
                 56789**************************************************************************************74444433333447899*******************************************9994 PP

  == domain 2    score: 130.8 bits;  conditional E-value: 1.1e-41
   TIGR00927  972 dGGdseeeeeeeee.eeeeeeeeeeeeeeeeeneeplslewpetrqkqaiylfllpivfplwltvpdvrrlearkffvitflGsilwiamfsylmvwwahqvGetiGiseeimGltilaaGtsipdlitsvivarkGlGdmavsssvGsnifditvGlplpwllfslinglqpvpvssnGlfcaivllflmllfvissialc.kwrmnkilGftmfllyfvfliisvm 1197
                  + G s  +eee+++ e+++e+e+++ ++++e  e p+        +  a  lfll     + +++p+    + +  ++ tf+ si+wi ++sy+m  wa ++G   Gi   +mG+t+laaGts+pd i s        Gdmavs ++Gsn+fdi +Gl lpw l  li g + v   ++Gl+ + +ll+  l +v + +++c  +r+ +  G   f lyfvf+  s++
  MMETSP1137-20121227|6646_1  220 NTGVSRLNEEEDDDkEDDKEKEDDNGDDDDEGGESPIL-------KAIARPLFLL-----FEISIPNCSDPKNKHRYLTTFFMSIVWIGVLSYFMTTWASKLGCLWGIHPAVMGVTVLAAGTSVPDAIGSAT----AXGDMAVSNAIGSNVFDILLGLGLPWALSNLISG-ENVHADTEGLLPSSILLLATLALV-YGVTVCmGFRLTRATGAFFFALYFVFVAYSLL 429 
                  44555555555555255555555555555555666653.......3345567776.....45799***************************************************************9975....67******************************99.67999******9999887776665.566666269*****************998875 PP

>> TIGR00367  TIGR00367: K+-dependent Na+/Ca+ exchanger homolog
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  226.7   0.8   9.4e-71   7.7e-68       3     312 .]      54     423 ..      51     423 .. 0.80

  Alignments for each domain:
  == domain 1    score: 226.7 bits;  conditional E-value: 9.4e-71
   TIGR00367   3 lvigllilglilvivsaellvksltviaeklgisdlviGvTvvaagtSlPElftsliavliaksdigigtvvGSnifNillvlglcallsreilvlt.........kl..lkrdvsfllvvlillliflldgvlesllllvllflyvvylkflvkver..kqain................dtlteeqvdenerq........................................rkqitfllvllivgltllvvgsrllVdsavqiaetlgiseeiiGltilAaGTSlpeLvvsviaarkglgdlavgsvvGsNifdIlvglglpallat....irvkpvavs.ldalvlvivllllll.ivvilsialkrwlglillalYiay 312
                 l+ g+++++  l+iv+++++v+sl++i+e+l +s++v+G+T++aag+S+PElftsl++v++ k+d+gigt+vGS++fN+  ++g +al++ ++  ++         ++  + rd  f++++++ ++ +l dg ++ l+++ l++ y++y+ ++       k + +                +          e +                                         k     l  + ++++++ v s+++  +a +++   gi   ++G+t+lAaGTS+p+ + s +a     gd+av++ +GsN+fdIl+glglp+ l++     +v+ ++   l  ++l++ +l l++ + v +  +l+r +g  ++alY+++
  MMETSP1137-20121227|6646_1  54 LLWGVFYMFWGLAIVCDDYFVTSLEDISEALSLSPDVAGATFMAAGSSAPELFTSLMGVFAVKNDVGIGTIVGSAVFNLCCIIGGTALFT-PMPKEKagvlpglhiDWkpITRDSIFYFISIFAMIYVLSDGAINLLEGVLLIVFYAIYVAVMAAWTPylKPMLErgntgvsrlneeedddK----------EDDkekeddngddddeggespilkaiarplfllfeisipncsdPKNKHRYLTTFFMSIVWIGVLSYFMTTWASKLGCLWGIHPAVMGVTVLAAGTSVPDAIGSATA----XGDMAVSNAIGSNVFDILLGLGLPWALSNlisgENVHADTEGlLPSSILLLATLALVYgVTVCMGFRLTRATGAFFFALYFVF 423
                 56789************************************************************************************9.5433221222222223338***************************************999987776554444455556655443332220..........221444466777788899888888888888888888888887756666667777778******************************************9988665....79***********************9999844434444443212344555555554443667779999*************98 PP

>> TIGR00845  caca: sodium/calcium exchanger 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    2.0   0.1    0.0087       7.2      81     104 ..      57      81 ..      43      85 .. 0.79
   2 !   43.6   4.0   2.4e-15   1.9e-12     131     247 ..      90     208 ..      86     217 .. 0.81
   3 !   62.6   0.5   4.2e-21   3.5e-18     706     874 ..     241     404 ..     233     416 .. 0.81

  Alignments for each domain:
  == domain 1    score: 2.0 bits;  conditional E-value: 0.0087
   TIGR00845  81 alvylflGvsiiad.rfmasievit 104
                  ++y+f G++i+ d  f++s+e i+
  MMETSP1137-20121227|6646_1  57 GVFYMFWGLAIVCDdYFVTSLEDIS 81 
                 579*********8626889999875 PP

  == domain 2    score: 43.6 bits;  conditional E-value: 2.4e-15
   TIGR00845 131 vsnltlmalGssaPeillsvievvgknfeaGdlGPstivGsaafnlfiiiaicvvviP..dGevrki..khlrvffvtaawsvfayvwlylilavfspGvvevweglltllffPl..tvllay 247
                 v+  t+ma GssaPe++ s++ v++ +    d+G +tivGsa fnl  ii+   ++ P  +     +   h++   +t   s+f ++ ++ ++ v+s G +++ eg+l ++f+ +  +v+ a+
  MMETSP1137-20121227|6646_1  90 VAGATFMAAGSSAPELFTSLMGVFAVK---NDVGIGTIVGSAVFNLCCIIGGTALFTPmpKEKAGVLpgLHIDWKPITR-DSIFYFISIFAMIYVLSDGAINLLEGVLLIVFYAIyvAVMAAW 208
                 7888*******************9976...6999****************98777765114444444114666666664.6*******************************98722556677 PP

  == domain 3    score: 62.6 bits;  conditional E-value: 4.2e-21
   TIGR00845 706 ddddddedgeeklPscfdyvmhfltvfwkvlf.afvPPtdylgGwacfvvsilliGlltaliGdlashfGctiglkdsvtavvfvalGtsvPdtfaskvaavqdkyadasiGnvtGsnavnvflGiGvawsiaaiyhaaqGekfkvep.Gtlafsvtlftvfali.aivvll 874
                 +dd+ d+d+e  +   ++ +   l + + +    +  P +     ++f +si+ iG+l+ ++   as++Gc  g+  +v  v+ +a GtsvPd+  s  a       d ++ n  Gsn  +++lG+G+ w+++ +     Ge+ + ++ G l  s++l+++ al+  ++v +
  MMETSP1137-20121227|6646_1 241 EDDNGDDDDEGGESPILKAIARPLFLLFEISIpNCSDPKNKHRYLTTFFMSIVWIGVLSYFMTTWASKLGCLWGIHPAVMGVTVLAAGTSVPDAIGSATA-----XGDMAVSNAIGSNVFDILLGLGLPWALSNL---ISGENVHADTeGLLPSSILLLATLALVyGVTVCM 404
                 4555555555556667888888777777776526778999999999*************************************************99776.....47899999*****************98876...5788877775388999999999999873466655 PP

>> TIGR00846  caca2: calcium/proton exchanger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.6   3.6   1.9e-11   1.6e-08     241     370 ..      67     204 ..      45     206 .. 0.84

  Alignments for each domain:
  == domain 1    score: 31.6 bits;  conditional E-value: 1.9e-11
   TIGR00846 241 allaellvstlesvveslglskafiglilipivgnaaEhvtavivalknkldialgvalGSalqiallvvplvvl........vawilgieldLnlealelvalvlsvlltaitlqdGrsnyleGavlLalyviiala 370
                 +++ ++ v++le+++e+l ls  + g + ++    a+E  t+++ ++  k d+ +g ++GSa+     ++  ++l         +++ g ++d +  + + +  ++s++ ++++l+dG  n leG+ l+  y+i++++
  MMETSP1137-20121227|6646_1  67 IVCDDYFVTSLEDISEALSLSPDVAGATFMAAGSSAPELFTSLMGVFAVKNDVGIGTIVGSAVFNLCCIIGGTALftpmpkekAGVLPGLHIDWKPITRDSIFYFISIFAMIYVLSDGAINLLEGVLLIVFYAIYVAV 204
                 56899*********************************************************8654444433333111111115677788999999999***********************************9876 PP

>> TIGR00378  cax: calcium/proton exchanger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   3.5   5.5e-08   4.5e-05     219     344 ..      68     201 ..      45     207 .. 0.80
   2 ?   -1.1   0.8      0.22   1.8e+02      79     134 ..     346     399 ..     283     430 .. 0.70

  Alignments for each domain:
  == domain 1    score: 20.6 bits;  conditional E-value: 5.5e-08
   TIGR00378 219 visellvgtlesvveslGlsklfiGvivvpivGnaaehatavlvalkdkmdlalevavGsslq....i....alfvaPvlvivgilidvpmdlnfslfelvallvavllvnaissdGesnwleGvlllaayviv 344
                 v+ +++v +le ++e l ls    G   ++    a e  t+++  +  k d+ ++ +vGs++     i    alf        g+l +  +d +  + + +  +++++ ++++ sdG  n leGvll+  y+i 
  MMETSP1137-20121227|6646_1  68 VCDDYFVTSLEDISEALSLSPDVAGATFMAAGSSAPELFTSLMGVFAVKNDVGIGTIVGSAVFnlccIiggtALFTPMPKEKAGVLPGLHIDWKPITRDSIFYFISIFAMIYVLSDGAINLLEGVLLIVFYAIY 201
                 6899***************************99***************************8632112112224443322344566666677777778889999*************************999884 PP

  == domain 2    score: -1.1 bits;  conditional E-value: 0.22
   TIGR00378  79 ivkasltGsvlgnlllvlGlafflGGlkykeqefnqlaarlnssllalavvalliP 134
                 + +   +Gs + ++ll lGl   l  l   e     ++  l ss+l la  al+  
  MMETSP1137-20121227|6646_1 346 VSN--AIGSNVFDILLGLGLPWALSNLISGENVHADTEGLLPSSILLLATLALVYG 399
                 433..468888888888888888888888888888888888888888888888754 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (534 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       169  (0.0411994); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.54u 0.18s 00:00:00.72 Elapsed: 00:00:00.96
# Mc/sec: 734.19
//
Query:       MMETSP1137-20121227|6648_1  [L=435]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (435 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        86  (0.0209654); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.11s 00:00:00.41 Elapsed: 00:00:00.82
# Mc/sec: 700.19
//
Query:       MMETSP1137-20121227|6649_1  [L=261]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (261 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        84  (0.0204778); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.16s 00:00:00.38 Elapsed: 00:00:00.97
# Mc/sec: 355.15
//
Query:       MMETSP1137-20121227|6650_1  [L=1179]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.5e-07   27.7   0.1       0.19    7.5   0.0    5.1  4  TIGR00870 trp: transient-receptor-potential calcium channel protein
  ------ inclusion threshold ------
       0.12   10.2   0.5         20    3.0   0.0    3.4  5  TIGR03043 PS_II_psbZ: photosystem II core protein PsbZ
       0.44    8.7  10.2        9.1    4.5   0.2    3.4  3  TIGR01030 rpmH_bact: ribosomal protein L34


Domain annotation for each model (and alignments):
>> TIGR00870  trp: transient-receptor-potential calcium channel protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.5   0.0   0.00014      0.19     127     159 ..     273     305 ..     244     353 .. 0.86
   2 !    2.8   0.0    0.0036         5     130     160 ..     436     466 ..     431     501 .. 0.90
   3 !    7.5   0.0   0.00014      0.19     127     159 ..     743     775 ..     714     823 .. 0.86
   4 !    2.8   0.0    0.0036         5     130     160 ..     906     936 ..     901     970 .. 0.90

  Alignments for each domain:
  == domain 1    score: 7.5 bits;  conditional E-value: 0.00014
   TIGR00870 127 eftkgitalilAihkqnyeivklLlekgasvea 159
                 +   g t+l+ A+    +e+v+lLle  a v  
  MMETSP1137-20121227|6650_1 273 TDASGNTPLHQAATGGRLETVSLLLEAQAAVDS 305
                 456799***********************9984 PP

  == domain 2    score: 2.8 bits;  conditional E-value: 0.0036
   TIGR00870 130 kgitalilAihkqnyeivklLlekgasvear 160
                 kg+t+l+ A+ +     v +L+  ga++ ar
  MMETSP1137-20121227|6650_1 436 KGHTPLHWAAKCGRADDVDALVGAGAKLDAR 466
                 79************************99976 PP

  == domain 3    score: 7.5 bits;  conditional E-value: 0.00014
   TIGR00870 127 eftkgitalilAihkqnyeivklLlekgasvea 159
                 +   g t+l+ A+    +e+v+lLle  a v  
  MMETSP1137-20121227|6650_1 743 TDASGNTPLHQAATGGRLETVSLLLEAQAAVDS 775
                 456799***********************9984 PP

  == domain 4    score: 2.8 bits;  conditional E-value: 0.0036
   TIGR00870 130 kgitalilAihkqnyeivklLlekgasvear 160
                 kg+t+l+ A+ +     v +L+  ga++ ar
  MMETSP1137-20121227|6650_1 906 KGHTPLHWAAKCGRADDVDALVGAGAKLDAR 936
                 79*************************9976 PP

>> TIGR03043  PS_II_psbZ: photosystem II core protein PsbZ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0      0.96   1.3e+03      21      32 ..       7      18 ..       5      23 .. 0.86
   2 ?    3.0   0.0     0.015        20      18      40 ..     309     332 ..     309     335 .. 0.82
   3 ?   -3.0   0.0       1.2   1.6e+03      21      32 ..     473     484 ..     472     487 .. 0.86
   4 ?    3.0   0.0     0.015        20      18      40 ..     779     802 ..     779     805 .. 0.82
   5 ?   -2.8   0.0      0.96   1.3e+03      21      32 ..     943     954 ..     941     959 .. 0.86

  Alignments for each domain:
  == domain 1    score: -2.8 bits;  conditional E-value: 0.96
   TIGR03043 21 PVvyatpedwer 32
                P ++a++ +w++
  MMETSP1137-20121227|6650_1  7 PLIFAAAAGWDD 18
                899999999986 PP

  == domain 2    score: 3.0 bits;  conditional E-value: 0.015
   TIGR03043  18 VgV.PVvyatpedwersknliflg 40 
                 VgV P ++a++++w +s + ++++
  MMETSP1137-20121227|6650_1 309 VGVtPLMFAAAGGWAESVRALLSA 332
                 56669***********98887766 PP

  == domain 3    score: -3.0 bits;  conditional E-value: 1.2
   TIGR03043  21 PVvyatpedwer 32 
                 P ++a++ +w++
  MMETSP1137-20121227|6650_1 473 PLIFAAAAGWDD 484
                 899999999986 PP

  == domain 4    score: 3.0 bits;  conditional E-value: 0.015
   TIGR03043  18 VgV.PVvyatpedwersknliflg 40 
                 VgV P ++a++++w +s + ++++
  MMETSP1137-20121227|6650_1 779 VGVtPLMFAAAGGWAESVRALLSA 802
                 56669***********98887766 PP

  == domain 5    score: -2.8 bits;  conditional E-value: 0.96
   TIGR03043  21 PVvyatpedwer 32 
                 P ++a++ +w++
  MMETSP1137-20121227|6650_1 943 PLIFAAAAGWDD 954
                 899999999986 PP

>> TIGR01030  rpmH_bact: ribosomal protein L34
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   0.2    0.0067       9.1      18      40 ..      28      50 ..      25      51 .. 0.83
   2 ?    4.5   0.2    0.0067       9.1      18      40 ..     494     516 ..     491     517 .. 0.83
   3 ?    4.5   0.2    0.0067       9.1      18      40 ..     964     986 ..     961     987 .. 0.83

  Alignments for each domain:
  == domain 1    score: 4.5 bits;  conditional E-value: 0.0067
   TIGR01030 18 FraRMaTknGRkvlkrRRaKgRk 40
                  a M+T++GR  l++   K R+
  MMETSP1137-20121227|6650_1 28 ADAAMKTNKGRSALAAAEEKARA 50
                5688**********998888885 PP

  == domain 2    score: 4.5 bits;  conditional E-value: 0.0067
   TIGR01030  18 FraRMaTknGRkvlkrRRaKgRk 40 
                   a M+T++GR  l++   K R+
  MMETSP1137-20121227|6650_1 494 ADAAMKTNKGRSALAAAEEKARA 516
                 5688**********998888885 PP

  == domain 3    score: 4.5 bits;  conditional E-value: 0.0067
   TIGR01030  18 FraRMaTknGRkvlkrRRaKgRk 40 
                   a M+T++GR  l++   K R+
  MMETSP1137-20121227|6650_1 964 ADAAMKTNKGRSALAAAEEKARA 986
                 5688**********998888885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1179 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        48  (0.0117016); expected 82.0 (0.02)
Passed bias filter:                       25  (0.00609459); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.68u 0.15s 00:00:00.83 Elapsed: 00:00:00.81
# Mc/sec: 1921.17
//
Query:       MMETSP1137-20121227|6651_1  [L=731]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (731 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       158  (0.0385178); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.51u 0.16s 00:00:00.67 Elapsed: 00:00:00.62
# Mc/sec: 1556.19
//
Query:       MMETSP1137-20121227|6652_1  [L=287]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (287 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        63  (0.0153584); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.14s 00:00:00.37 Elapsed: 00:00:00.35
# Mc/sec: 1082.31
//
Query:       MMETSP1137-20121227|6653_1  [L=450]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.8e-10   36.7   0.0    1.1e-06   26.2   0.0    2.2  2  TIGR01262 maiA: maleylacetoacetate isomerase
    0.00021   19.6   0.0    0.00052   18.3   0.0    1.6  1  TIGR02196 GlrX_YruB: glutaredoxin-like protein, YruB-family
     0.0034   15.6   0.1      0.007   14.6   0.1    1.5  1  TIGR02200 GlrX_actino: glutaredoxin-like protein
     0.0065   14.6   0.0      0.025   12.7   0.0    2.0  2  TIGR02181 GRX_bact: glutaredoxin 3


Domain annotation for each model (and alignments):
>> TIGR01262  maiA: maleylacetoacetate isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.2   0.0   1.1e-09   1.1e-06      17      92 ..      89     162 ..      72     170 .. 0.87
   2 !    8.2   0.0   0.00035      0.36     142     171 ..     202     231 ..     183     246 .. 0.87

  Alignments for each domain:
  == domain 1    score: 26.2 bits;  conditional E-value: 1.1e-09
   TIGR01262  17 aLaLkgidyesvpvnLlkdGeqkkeefkalNPqelvPtLkidegevltqSlAiieyLeetypepaLlpkdpakrar 92 
                  L+ k++ y ++ vn+   G +k + f a+ P++ +P+ k+d g+v+ +S  i++ +e++ype ++lp++ +++a 
  MMETSP1137-20121227|6653_1  89 LLEEKQVPYMVEKVNMNCYG-DKPAWFWAMQPSGGIPVAKVD-GKVIRESNDIMMAIEQAYPERPMLPREDSAKAV 162
                 567799**********9975.567789***************.6************************99888875 PP

  == domain 2    score: 8.2 bits;  conditional E-value: 0.00035
   TIGR01262 142 lEellkekagafcvGdevtladvcLvpqvy 171
                 +++ l+++ g f+ G++++l+d++++p + 
  MMETSP1137-20121227|6653_1 202 VDAALAAQGGPFFLGEDISLVDCMFAPFLE 231
                 67889999******************9874 PP

>> TIGR02196  GlrX_YruB: glutaredoxin-like protein, YruB-family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.0     5e-07   0.00052       2      61 ..      70     133 ..      69     137 .. 0.75

  Alignments for each domain:
  == domain 1    score: 18.3 bits;  conditional E-value: 5e-07
   TIGR02196   2 vkvY..ttpwCppCkkakeyLkskgiafeeidvekdsa..aaeellkklgqrsvPvivigekiv 61 
                 +++Y  t +wCp+C+k+   L++k +++    v+ +      +     + + ++Pv+ +++k++
  MMETSP1137-20121227|6653_1  70 ITLYrdTAAWCPYCEKVWLLLEEKQVPYMVEKVNMNCYgdKPAWFWAMQPSGGIPVAKVDGKVI 133
                 667755789*******************877777765410334455556688999999998876 PP

>> TIGR02200  GlrX_actino: glutaredoxin-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.1   6.9e-06     0.007       2      34 ..      70     104 ..      69     136 .. 0.73

  Alignments for each domain:
  == domain 1    score: 14.6 bits;  conditional E-value: 6.9e-06
   TIGR02200   2 vtvY..atswCgyCaslkrtLdkdgaeYevvdiek 34 
                 +t+Y  ++ wC+yC+++   L+++ ++Y v  ++ 
  MMETSP1137-20121227|6653_1  70 ITLYrdTAAWCPYCEKVWLLLEEKQVPYMVEKVNM 104
                 566633578*******************8766654 PP

>> TIGR02181  GRX_bact: glutaredoxin 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.7   0.0   2.4e-05     0.025       3      33 ..      72     104 ..      70     140 .. 0.84
   2 ?   -1.5   0.0      0.65   6.7e+02      48      63 ..     375     390 ..     370     392 .. 0.81

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 2.4e-05
   TIGR02181   3 iY..tkksCpycsrAkalLeekgvefeeievdk 33 
                 +Y  t + Cpyc++   lLeek+v +   +v++
  MMETSP1137-20121227|6653_1  72 LYrdTAAWCPYCEKVWLLLEEKQVPYMVEKVNM 104
                 55447789****************887666654 PP

  == domain 2    score: -1.5 bits;  conditional E-value: 0.65
   TIGR02181  48 rrtvPQifigdvhvGG 63 
                 + ++PQ+ +  +hv G
  MMETSP1137-20121227|6653_1 375 EGAIPQVDVALRHVVG 390
                 5689*********987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (450 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        73  (0.0177962); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.32u 0.15s 00:00:00.47 Elapsed: 00:00:00.56
# Mc/sec: 1042.02
//
Query:       MMETSP1137-20121227|6654_1  [L=255]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (255 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       225  (0.0548513); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.17s 00:00:00.38 Elapsed: 00:00:00.45
# Mc/sec: 747.94
//
Query:       MMETSP1137-20121227|6655_1  [L=97]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (97 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       103  (0.0251097); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.13s 00:00:00.29 Elapsed: 00:00:00.27
# Mc/sec: 474.18
//
Query:       MMETSP1137-20121227|6657_1  [L=629]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (629 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        95  (0.0231594); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.15s 00:00:00.55 Elapsed: 00:00:00.71
# Mc/sec: 1169.31
//
Query:       MMETSP1137-20121227|6658_1  [L=1466]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     6e-110  366.5   0.0    8.1e-92  306.7   0.0    2.8  2  TIGR01536 asn_synth_AEB: asparagine synthase (glutamine-hydrolyzing)
    3.5e-64  215.4   0.0    1.3e-35  121.0   0.0    3.1  3  TIGR03108 eps_aminotran_1: exosortase A system-associated amidotransferase 1
    2.8e-62  208.6   0.1    1.2e-28   97.5   0.0    3.1  3  TIGR03104 trio_amidotrans: asparagine synthase family amidotransferase
    8.7e-33  111.6   0.0    1.6e-32  110.7   0.0    1.3  1  TIGR00338 serB: phosphoserine phosphatase SerB
    3.9e-21   73.6   0.1    1.1e-20   72.2   0.0    1.8  2  TIGR01488 HAD-SF-IB: HAD phosphoserine phosphatase-like hydrolase, family IB
    5.1e-12   43.7   0.0    9.6e-12   42.8   0.0    1.3  1  TIGR01134 purF: amidophosphoribosyltransferase
    1.4e-11   42.6   0.0    2.7e-11   41.7   0.0    1.4  1  TIGR01489 DKMTPPase-SF: 2,3-diketo-5-methylthio-1-phosphopentane phosphatase
    1.9e-07   29.3   0.0    4.1e-07   28.3   0.0    1.5  1  TIGR01490 HAD-SF-IB-hyp1: HAD hydrolase, family IB
    1.4e-06   26.0   0.0    2.6e-06   25.1   0.0    1.3  1  TIGR01491 HAD-SF-IB-PSPlk: phosphoserine phosphatase-like hydrolase, archaeal
    2.5e-05   21.5   0.0    4.9e-05   20.5   0.0    1.4  1  TIGR00552 nadE: NAD+ synthetase
    2.6e-05   22.0   0.4       0.12   10.0   0.0    2.4  2  TIGR01487 SPP-like: SPP-like hydrolase, Archaeal
    2.7e-05   22.1   0.0    5.6e-05   21.0   0.0    1.4  1  TIGR03333 salvage_mtnX: 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase
     0.0012   15.2   0.0      0.002   14.5   0.0    1.2  1  TIGR01135 glmS: glutamine-fructose-6-phosphate transaminase (isomerizing)
  ------ inclusion threshold ------
      0.048   11.5   0.0        2.2    6.1   0.1    3.0  3  TIGR01484 HAD-SF-IIB: HAD hydrolase, family IIB
      0.054   10.9   0.0        0.1   10.0   0.0    1.3  1  TIGR00364 TIGR00364: queuosine biosynthesis protein QueC
       0.15    9.5   0.0        1.8    5.9   0.0    2.5  3  TIGR00099 Cof-subfamily: Cof-like hydrolase


Domain annotation for each model (and alignments):
>> TIGR01536  asn_synth_AEB: asparagine synthase (glutamine-hydrolyzing)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  306.7   0.0   3.2e-94   8.1e-92       1     384 [.      52     419 ..      52     428 .. 0.92
   2 !   57.3   0.1   1.2e-18   3.1e-16     440     515 ..     422     501 ..     415     503 .. 0.87

  Alignments for each domain:
  == domain 1    score: 306.7 bits;  conditional E-value: 3.2e-94
   TIGR01536   1 CgiagivdlkakakeeeeaikemletlahRGPDaegvwkdekeenailghrRLaiidlsegaQPlsnek.evvivfnGEIYNheeLreele....ekG...yeFetksDtEViLaayeewgeelverLeGmFAfalwdekkgelflaRDrlGikPLYyase.qgkllfaSEiKallalk.eikaeldkealaelltlqlvptektlfkevkelepakaldgeekleeywevekeevkeseeelveelrelledavkkrlvadvpvgvllSGGlDSslvaaiakkeak.sevktFsigfedskdldeskaarkvadelgtehkevliseeevlkeleevilale..eptairasiplyllsklarekgvkVvLsGeGaDElfgGYeyfreakaeeale 384
                 Cgi++++d++ + +e e+  ke++ +l+hRGPD+ g +k    +     h+RL+i+d  +g+QPl +++  +++++nGEIYNh +Lr++      ++G   yeF+t sD+E +L  +e +ge ++++L+GmF ++ + +  +++++ RD+ GikPLY + + +g+++faSE+K+l+    ++++++++++ +++ +++   ++k +   +  +ep++    +                     ++++re+l+ av+krl++dv +g+llSGGlDS +v+ ++++  + s++k+F++g+++s+d+    aar+va+ +gt+h+e+l+++ee+++ +++vi++le  ep  ir+sip ++l++la  + +kVvL+GeGaDElf+GY yfr+ +++ea++
  MMETSP1137-20121227|6658_1  52 CGILAVFDSRIDDDEMEKLTKELTCLLEHRGPDEVG-YKR---AWLWAWHARLSIMDPAAGHQPLVSKAtGAAVIHNGEIYNHAKLRARTAkeraAAGkplYEFQTGSDSEAVLPFFEDLGEGVISQLDGMFTVIAVSADGEQVVVGRDPCGIKPLYRGWNtDGRVIFASELKCLVGQVeQVEEFPPGHYWTPQKGYVRYFQPKWMTPLLDPAEPIELP--TG-------------------GTNKIRETLKMAVEKRLMSDVDYGLLLSGGLDSAIVCKLMSELTDmSKIKSFTVGMANSPDVT---AARAVAEVFGTDHYEYLFTPEEAFSIVPKVIYHLEtyEPELIRSSIPNFFLARLAGSH-LKVVLTGEGADELFAGYLYFRDCPSREAMQ 419
                 *********999888889******************.666...689999*******************9989***************866411114567779*********************************************************998**************8777******************666677776666666666664..22...................23469***************************************9999***************...**********************************************************.*************************99997 PP

  == domain 2    score: 57.3 bits;  conditional E-value: 1.2e-18
   TIGR01536 440 lrldlelllsdllrakDrvsmahslEvRvPflDkelvelal.sippelklr..dgkeKvlLreaaee.llPeeileRkKe 515
                 + +    l++ +l+++Dr+ mah++E+RvPflD e++++a+ +++p +k++  + +eK+ Lre++++  +P+++++R K+
  MMETSP1137-20121227|6658_1 422 TIRIYDALHNVNLQRSDRMGMAHGVEARVPFLDVEMLRMAYeEVDPAIKMHseARMEKFCLRELFDDgDIPQDVVWRTKA 501
                 55556778899**************************998736***9999977899***********99********997 PP

>> TIGR03108  eps_aminotran_1: exosortase A system-associated amidotransferase 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  121.0   0.0   5.1e-38   1.3e-35       1     169 [.      51     225 ..      51     234 .. 0.91
   2 !   71.8   0.0   4.1e-23   1.1e-20     202     386 ..     231     418 ..     225     429 .. 0.77
   3 !   19.5   0.0   2.7e-07   6.9e-05     497     559 ..     435     501 ..     423     531 .. 0.83

  Alignments for each domain:
  == domain 1    score: 121.0 bits;  conditional E-value: 5.1e-38
   TIGR03108   1 mcGiagifdlegkreidrellkrmnealahrGPdeegvhvepGiglghrrlsiidlaggkqPlanedgsvvvvfnGeiynfkelv....kelealG...hqfrtksdtevivhaWeeWGedcverlrGmfafalwdrkketlflardrlgvkPlyyalledGalifgselkallah 169
                 mcGi ++fd + + +  ++l k+++  l hrGPde g+  ++ +   h rlsi+d a+g+qPl+++   ++v++nGeiyn+++l+    ke  a+G   ++f+t sd e ++  +e+ Ge  +++l Gmf+ +      e++++ rd  g+kPly +  +dG++if+selk+l+ +
  MMETSP1137-20121227|6658_1  51 MCGILAVFDSRIDDDEMEKLTKELTCLLEHRGPDEVGYK-RAWLWAWHARLSIMDPAAGHQPLVSKATGAAVIHNGEIYNHAKLRartaKERAAAGkplYEFQTGSDSEAVLPFFEDLGEGVISQLDGMFTVIAVSADGEQVVVGRDPCGIKPLYRGWNTDGRVIFASELKCLVGQ 225
                 9***********999999999**************9965.6778889************************************972222456678855569***********************************************************************9865 PP

  == domain 2    score: 71.8 bits;  conditional E-value: 4.1e-23
   TIGR03108 202 kleaghtltlrrgeakaeprqyWdvsfaaeaslse.eeleeelierlkeavelrlvadvPlGaflsGGvdssavvallaklsee.Pvktcsiafddaafdeaeyakkvaeryktehkvetve.addfdlvdrlaglyd..ePfadssalPtyrvcelarkrvtvalsGdGgdelfaGyrryrlhlaeerv 386
                  +++gh+ t ++g  +  + ++    + ++++ +     ++++ e lk ave rl++dv  G +lsGG+ds+ v  l+++l++   +k+ ++++ +    + + a++vae ++t+h+    + +++f+ v +++   +  eP    s++P + + +la ++++v+l+G+G+delfaGy  +r     e++
  MMETSP1137-20121227|6658_1 231 EFPPGHYWTPQKGYVRYFQPKWMTPLLDPAEPIELpTGGTNKIRETLKMAVEKRLMSDVDYGLLLSGGLDSAIVCKLMSELTDMsKIKSFTVGMAN--SPDVTAARAVAEVFGTDHYEYLFTpEEAFSIVPKVIYHLEtyEPELIRSSIPNFFLARLAGSHLKVVLTGEGADELFAGYLYFRDCPSREAM 418
                 555555555555555554444444444455554431345678999***********************************9985268888888765..567889************9887651678****998754433388888999******************************988865554444 PP

  == domain 3    score: 19.5 bits;  conditional E-value: 2.7e-07
   TIGR03108 497 tkvdrasmavglevrvPlldhrlvewaa.klpsslklrg..aeGkyllkkalep.ylpedvlyrkkm 559
                  + dr  ma+g+e+rvP+ld +++ +a  ++   +k+++  +  k+ l+  ++   +p+dv++r+k 
  MMETSP1137-20121227|6658_1 435 QRSDRMGMAHGVEARVPFLDVEMLRMAYeEVDPAIKMHSeaRMEKFCLRELFDDgDIPQDVVWRTKA 501
                 578*********************99852688888887611568*****9997538********995 PP

>> TIGR03104  trio_amidotrans: asparagine synthase family amidotransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.5   0.0   4.8e-31   1.2e-28       1     167 [.      51     224 ..      51     236 .. 0.84
   2 !   82.2   0.0   2.1e-26   5.4e-24     242     386 ..     270     412 ..     245     432 .. 0.89
   3 !   25.3   0.1   3.6e-09   9.1e-07     457     518 ..     434     500 ..     421     503 .. 0.83

  Alignments for each domain:
  == domain 1    score: 97.5 bits;  conditional E-value: 4.8e-31
   TIGR03104   1 mcGiaGelrfdgraad..vaa.vermaaelakrGPdaeGvfaqgkvalGhrrlkiidlseasqqPmvdaelglalvfnGaiynykelre....elealG...yrffsegdtevilkayhawGeelvsrleGmfafaiwerdsgrlllardrlGikPlyla.edekrlrfasslpalla 167
                 mcGi     fd r+ d  +++  ++++  l++rGPd++G ++++ +   h rl+i+d  +a++qP+v +++g a+++nG iyn+++lr+    e  a+G   y+f + +d+e +l  +++ Ge ++s+l Gmf++  +  d ++++++rd  GikPly   ++++r+ fas+l+ l+ 
  MMETSP1137-20121227|6658_1  51 MCGILA--VFDSRIDDdeMEKlTKELTCLLEHRGPDEVG-YKRAWLWAWHARLSIMDP-AAGHQPLVSKATGAAVIHNGEIYNHAKLRArtakERAAAGkplYEFQTGSDSEAVLPFFEDLGEGVISQLDGMFTVIAVSADGEQVVVGRDPCGIKPLYRGwNTDGRVIFASELKCLVG 224
                 888875..45655544112231345677789*******9.678899999********6.589*************************9622226667777789*******************************************************87366789********9985 PP

  == domain 2    score: 82.2 bits;  conditional E-value: 2.1e-26
   TIGR03104 242 kdavlealrlavkrrlvadvpvGvllsGGldssllvallaeag.vedlktfsvGfedvggekgdefeysdliaerfetrhhkllipeeevlealpeavaams..ePmvshdavafyllseevskevkvvqsGqGadevfaGyhwyPkl 386
                 +++++e+l++av++rl++dv+ G llsGGlds+++  l++e + ++++k+f+vG+ + +++ +     +  +ae f t+h ++l + ee ++ +p+ + ++   eP + + ++  ++l++    + kvv +G Gade+faGy ++   
  MMETSP1137-20121227|6658_1 270 TNKIRETLKMAVEKRLMSDVDYGLLLSGGLDSAIVCKLMSELTdMSKIKSFTVGMANSPDVTA-----ARAVAEVFGTDHYEYLFTPEEAFSIVPKVIYHLEtyEPELIRSSIPNFFLARLAGSHLKVVLTGEGADELFAGYLYFRDC 412
                 5799************************************9752789********99998776.....679***************************976444**************************************998655 PP

  == domain 3    score: 25.3 bits;  conditional E-value: 3.6e-09
   TIGR03104 457 vkrvdnmtmawGlearvPfldhelvelaa.riPaelklkdeG...klvlkei.arkviPsevidrpk 518
                 ++r d m ma G+earvPfld e+  +a  ++ +++k+++e    k+ l+e+   + iP++v+ r k
  MMETSP1137-20121227|6658_1 434 LQRSDRMGMAHGVEARVPFLDVEMLRMAYeEVDPAIKMHSEArmeKFCLRELfDDGDIPQDVVWRTK 500
                 6899***********************97368999**998753337899987245789999999988 PP

>> TIGR00338  serB: phosphoserine phosphatase SerB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  110.7   0.0   6.4e-35   1.6e-32      10     204 ..    1184    1386 ..    1177    1400 .. 0.85

  Alignments for each domain:
  == domain 1    score: 110.7 bits;  conditional E-value: 6.4e-35
   TIGR00338   10 llkkkklvvfDlDstlieeEvIdeiaklaGveeeVseiTerAmrgeldFkeslreRvkllkglpve..llkkveekl.elteGveelvkkLkekgykvaviSGgFdlvaeklkekLglda..vfaNrLeve.dgkltGkvegeivdesakaktllkllekegislektvavGDGanDlsm...ikaAglgiafnakpvlkekad 204 
                   l + ++  +D+  t+  +    e     G ++ V+e+T +Am g+++F+e+lr+R++l+++++ +  ++++ +++   l +Gv e+++ ++ +g++v+ +SGgF++++e ++e  g+d   + +N+L ++ dg +  +   e+++   ++k ++ +  k++  ++k+v++GDGa+D+++   ++ A+++i+f + +v+ ++ d
  MMETSP1137-20121227|6658_1 1184 XLXQXDAXXLDVXXTVXXHXXXXEXXXXLGXGDRVREMTLKAMGGDVPFHEALRSRLALMRPSESDleDMRERHDPAkMLSPGVLETIRLMQARGVRVFFVSGGFRQMIEPIAEACGVDKtdIYSNTLLFHaDGSFKCHCPQEPTSRA-GGKAKVVVDLKKEYGFKKVVMIGDGATDMEArdvVDGADAFIGFGGCKVRSKVLD 1386
                  566778888999999999999999999**********************************987664345555554415789*************************************9889*******99********99999876.666666666666666789***********97333778********9998887765 PP

>> TIGR01488  HAD-SF-IB: HAD phosphoserine phosphatase-like hydrolase, family IB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.1       4.6   1.2e+03     162     175 ..     517     530 ..     516     532 .. 0.84
   2 !   72.2   0.0   4.2e-23   1.1e-20      24     174 ..    1212    1363 ..    1192    1366 .. 0.86

  Alignments for each domain:
  == domain 1    score: -2.9 bits;  conditional E-value: 4.6
   TIGR01488 162 iavGDsvnDlpllk 175
                 +++GD v+D +++ 
  MMETSP1137-20121227|6658_1 517 AMCGDVVSDAEFAD 530
                 69*******99875 PP

  == domain 2    score: 72.2 bits;  conditional E-value: 4.2e-23
   TIGR01488   24 lgtndevkeltrlvlegrisfedrlgrrlkllerslleelak..eflakevairpgarelikwlkekGiklvivSggldflveklaeklgidk..vfanelelddnGlltgrieg.e.vnpsgeeKgkvlkelleeskedrkeiiavGDsvnDlpll 174 
                  lg  d+v+e+t +++ g ++f ++l++rl+l + s+  +l++  e+ +   +++pg+ e+i+ ++++G++++ vSgg++  +e++ae  g+dk  +++n l + ++G +    ++ + ++ +   K kv+  l++e +   k+++++GD+++D+++ 
  MMETSP1137-20121227|6658_1 1212 LGXGDRVREMTLKAMGGDVPFHEALRSRLALMRPSE-SDLEDmrERHDPAKMLSPGVLETIRLMQARGVRVFFVSGGFRQMIEPIAEACGVDKtdIYSNTLLFHADGSFKC--HCpQePTSRAGGKAKVVVDLKKEYGF--KKVVMIGDGATDMEAR 1363
                  555699*****************************8.55555457999999999*****************************************************9999..554438888889*****987777755..89***********997 PP

>> TIGR01134  purF: amidophosphoribosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.8   0.0   3.7e-14   9.6e-12      83     219 ..     108     242 ..      95     253 .. 0.78

  Alignments for each domain:
  == domain 1    score: 42.8 bits;  conditional E-value: 3.7e-14
   TIGR01134  83 eaqPlvvssavgglalaHNGnlvnaeelreeleeeg.......rkfntssDsevllallaeeeeskeelekavaevlervkGaYalvlms..eeklvavrDPvGvrPLvlgrkedg.yvvaSEsvAldlgaelvrdvepgevvvlkd 219
                   qPlv +++  g a+ HNG++ n ++lr+++++e         +f+t sDse +l  ++             + v++++ G ++++++s   e++v+ rDP G++PL  g ++dg  ++aSE   l  + e+v++  pg   + ++
  MMETSP1137-20121227|6658_1 108 GHQPLVSKAT--GAAVIHNGEIYNHAKLRARTAKERaaagkplYEFQTGSDSEAVLPFFED---LG-------EGVISQLDGMFTVIAVSadGEQVVVGRDPCGIKPLYRGWNTDGrVIFASELKCLVGQVEQVEEFPPGHYWTPQK 242
                 57****8777..58***************9887764444456668********99999974...22.......23456677888877665115789999************888887899***99999888889*****98876554 PP

>> TIGR01489  DKMTPPase-SF: 2,3-diketo-5-methylthio-1-phosphopentane phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.7   0.0     1e-13   2.7e-11      72     180 ..    1262    1365 ..    1232    1371 .. 0.85

  Alignments for each domain:
  == domain 1    score: 41.7 bits;  conditional E-value: 1e-13
   TIGR01489   72 pidegvkefiefikekeidliviSdgnefFidavleaigvkdvfveiysNkasfdsdgrltvvnhkahgcssspkglcKgkvieklsek.kkekivyiGDgvsDvcpakl 180 
                   + +gv+e i  ++++++++  +S+g    i+++ ea gv+   ++iysN   f+ dg +    ++  + +s   g  K kv+  l+++ + +k+v+iGDg +D+++   
  MMETSP1137-20121227|6658_1 1262 MLSPGVLETIRLMQARGVRVFFVSGGFRQMIEPIAEACGVDK--TDIYSNTLLFHADGSFKCHCPQ--EPTSRAGG--KAKVVVDLKKEyGFKKVVMIGDGATDMEARDV 1365
                  4789**************************************..***************9987777..65555555..78888888888799*************99765 PP

>> TIGR01490  HAD-SF-IB-hyp1: HAD hydrolase, family IB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.3   0.0   1.6e-09   4.1e-07      68     191 ..    1246    1367 ..    1233    1373 .. 0.85

  Alignments for each domain:
  == domain 1    score: 28.3 bits;  conditional E-value: 1.6e-09
   TIGR01490   68 keedvreiveevvnqkiesllypeardlikahkaeGhkvvlvSasleilvkplArklgidn..ligtrleeaedGiltGelegenl.kgeeKvkalaellaeekidlkesyaYsDsisDlpllslvg 191 
                  +e+d++++ e+  ++   ++l p ++++i+  +a+G +v+ vS+++ ++++p+A++ g+d+  +  + l    dG +      e + ++ +K+k +  l +e+ +  k++ + +D  +D++   +v+
  MMETSP1137-20121227|6658_1 1246 SESDLEDMRERHDPA---KMLSPGVLETIRLMQARGVRVFFVSGGFRQMIEPIAEACGVDKtdIYSNTLLFHADGSFKCHCPQEPTsRAGGKAKVVVDLKKEYGF--KKVVMIGDGATDMEARDVVD 1367
                  578899999998885...79***************************************85337899999*********99776651556799989888877776..8***********98766666 PP

>> TIGR01491  HAD-SF-IB-PSPlk: phosphoserine phosphatase-like hydrolase, archaeal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.1   0.0     1e-08   2.6e-06      86     185 ..    1268    1369 ..    1261    1379 .. 0.86

  Alignments for each domain:
  == domain 1    score: 25.1 bits;  conditional E-value: 1e-08
   TIGR01491   86 eevvrlLkekGlktavvsgGislLvkkvaeklqaDy..vlsnelvfdekGfvqpdg..ivrvivdkkgiavkrlkseLnaskeetvavGDskedasifevadla 185 
                   e +rl++ +G+++  vsgG   +++ +ae  ++D    +sn l+f  +G  + +    +      k ++v  lk+e +   +++v++GD   d+ +  v+d a
  MMETSP1137-20121227|6658_1 1268 LETIRLMQARGVRVFFVSGGFRQMIEPIAEACGVDKtdIYSNTLLFHADGSFKCHCpqEPTSRAGGKAKVVVDLKKEYGF--KKVVMIGDGATDMEARDVVDGA 1369
                  699******************************9973369**********99987611455566778899********99..99***********999998865 PP

>> TIGR00552  nadE: NAD+ synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   0.0   1.9e-07   4.9e-05       6     145 ..     270     406 ..     266     409 .. 0.81

  Alignments for each domain:
  == domain 1    score: 20.5 bits;  conditional E-value: 1.9e-07
   TIGR00552   6 veeledflkekvkksgakgvvlG..lSGGiDSavvaalavealgkeevlalilpesnqaseqdvqdalalveklgietkeikiepiaaslqakkeklseekdklakgNlkaRlRmallyaianklnlLvlgTgnksElvlGy 145
                 ++++++ lk  v+k+ ++ v +G  lSGG+DSa+v +l  e  +  ++    +   n+    dv++a+a++e +g  + e+  +p  a ++   + + + + +   + +++ +   +l   a+++ ++vl  + + El  Gy
  MMETSP1137-20121227|6658_1 270 TNKIRETLKMAVEKRLMSDVDYGllLSGGLDSAIVCKLMSELTDMSKIKSFTVGMANS---PDVTAARAVAEVFGTDHYEYLFTPEEA-FSIVPKVIYHLE-TYEPELIRSSIPNFFLARLAGSHLKVVLTGEGADELFAGY 406
                 6899999****************555******************86655555554433...47**************99999998877.656555555555.4556778888888999999999999999888888888888 PP

>> TIGR01487  SPP-like: SPP-like hydrolase, Archaeal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.0   0.0   0.00048      0.12      15      60 ..    1259    1304 ..    1254    1316 .. 0.88
   2 !    9.4   0.3   0.00072      0.19     147     182 ..    1333    1366 ..    1315    1371 .. 0.87

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 0.00048
   TIGR01487   15 knrlislraieairklekkGikvvlvtGnevkfvealavligvsga 60  
                  + +++s+ ++e ir ++ +G++v  v+G   +++e +a   gv+ +
  MMETSP1137-20121227|6658_1 1259 PAKMLSPGVLETIRLMQARGVRVFFVSGGFRQMIEPIAEACGVDKT 1304
                  67899*****************************999988887765 PP

  == domain 2    score: 9.4 bits;  conditional E-value: 0.00072
   TIGR01487  147 dKgvgvkklkellGlkkeevaaiGDsenDldlFrva 182 
                  +K + v  lk+ +G+kk  v++iGD+ +D+++  v+
  MMETSP1137-20121227|6658_1 1333 GKAKVVVDLKKEYGFKK--VVMIGDGATDMEARDVV 1366
                  578889999*******9..***********997776 PP

>> TIGR03333  salvage_mtnX: 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.0   0.0   2.2e-07   5.6e-05      71     176 ..    1263    1367 ..    1239    1374 .. 0.85

  Alignments for each domain:
  == domain 1    score: 21.0 bits;  conditional E-value: 2.2e-07
   TIGR03333   71 iregfrefvafvnekeiplyvvsggldffvypllegl.vekeriycneadfsneyieiewphacdgecqndcglckpslirklsetddy..vvvigdsvtdleaaklad 176 
                  + +g  e + +++ +++ ++ vsgg+  ++ p+ e   v+k  iy n   f+++    ++   c +e +   g  k+ ++  l+++ ++  vv+igd  td+ea  + d
  MMETSP1137-20121227|6658_1 1263 LSPGVLETIRLMQARGVRVFFVSGGFRQMIEPIAEACgVDKTDIYSNTLLFHADG---SFKCHCPQEPTSRAG-GKAKVVVDLKKEYGFkkVVMIGDGATDMEARDVVD 1367
                  5679999***************************98669************9875...456667777777666.5888999999999885569**********987766 PP

>> TIGR01135  glmS: glutamine-fructose-6-phosphate transaminase (isomerizing)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.0   7.6e-06     0.002      85     208 ..     110     233 ..      66     251 .. 0.77

  Alignments for each domain:
  == domain 1    score: 14.5 bits;  conditional E-value: 7.6e-06
   TIGR01135  85 HPHvdekgeiavvhNGiieNykelreelekkg.......vefkSdTDtEviahlieeelkeeedlleavqkalkklrGayalavldkdepeklvaarkes...PLivgl.gegenfvaSdvtallevtrrvvvLe 208
                  P v++++  av+hNG i N+++lr +  k+        +ef+   D+E +   +e+  +           ++++l+G ++++ +++d  e++v+ r  +   PL  g   +g +++aS+ + l+  +++v  + 
  MMETSP1137-20121227|6658_1 110 QPLVSKATGAAVIHNGEIYNHAKLRARTAKERaaagkplYEFQTGSDSEAVLPFFEDLGE----------GVISQLDGMFTVIAVSADG-EQVVVGRDPCgikPLYRGWnTDGRVIFASELKCLVGQVEQVEEFP 233
                 4888999999**************987655422233555899*******99999887554..........4799*******87777665.5599999876666*****956789999********9999987665 PP

>> TIGR01484  HAD-SF-IIB: HAD hydrolase, family IIB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0       3.2   8.2e+02      39      62 ..     192     216 ..     191     229 .. 0.79
   2 ?    1.1   0.0      0.29        75      17      71 ..    1263    1316 ..    1257    1322 .. 0.82
   3 ?    6.1   0.1    0.0087       2.2     180     212 ..    1333    1363 ..    1328    1369 .. 0.89

  Alignments for each domain:
  == domain 1    score: -2.3 bits;  conditional E-value: 3.2
   TIGR01484  39 vTGRslaeikellkqlnl.elplia 62 
                 v GR+++ ik+l++ +n+ +  ++a
  MMETSP1137-20121227|6658_1 192 VVGRDPCGIKPLYRGWNTdGRVIFA 216
                 66**************996555554 PP

  == domain 2    score: 1.1 bits;  conditional E-value: 0.29
   TIGR01484   17 lseelieaLerlrealgvkvvivTGRslaeikellkqlnlelpliaengalieaq 71  
                  ls+ + e++   +++ gv+v++v+G   + i+++++  +++ + i +n  l++a+
  MMETSP1137-20121227|6658_1 1263 LSPGVLETIRLMQAR-GVRVFFVSGGFRQMIEPIAEACGVDKTDIYSNTLLFHAD 1316
                  677788877777888.9********999999999999999888777777777765 PP

  == domain 3    score: 6.1 bits;  conditional E-value: 0.0087
   TIGR01484  180 dKgkalqalleelnlkkeeilafGDsgNDeeml 212 
                  +K+k++ +l +e++   ++++ +GD+++D e+ 
  MMETSP1137-20121227|6658_1 1333 GKAKVVVDLKKEYG--FKKVVMIGDGATDMEAR 1363
                  79************..999**********9975 PP

>> TIGR00364  TIGR00364: queuosine biosynthesis protein QueC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.0    0.0004       0.1       4      54 ..     294     344 ..     293     349 .. 0.89

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 0.0004
   TIGR00364   4 vlSGGlDSttvllialkegeeveavtFdYgqrhskElevAkkiaealgike 54 
                 +lSGGlDS++v  ++ +  +  ++ +F  g   s ++ +A+ +ae  g  +
  MMETSP1137-20121227|6658_1 294 LLSGGLDSAIVCKLMSELTDMSKIKSFTVGMANSPDVTAARAVAEVFGTDH 344
                 79*********999999888888889******************9988766 PP

>> TIGR00099  Cof-subfamily: Cof-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0       1.8   4.6e+02      54      86 ..     108     139 ..      98     141 .. 0.76
   2 ?    5.9   0.0    0.0072       1.8      15      71 ..    1261    1317 ..    1257    1323 .. 0.90
   3 ?   -0.6   0.0      0.67   1.7e+02     189     218 ..    1334    1361 ..    1326    1366 .. 0.81

  Alignments for each domain:
  == domain 1    score: -2.0 bits;  conditional E-value: 1.8
   TIGR00099  54 gld.plivanGaavvdengkeilykkpldldlve 86 
                 g++  +  a+Gaav+++   ei ++ +l +++++
  MMETSP1137-20121227|6658_1 108 GHQpLVSKATGAAVIHNG--EIYNHAKLRARTAK 139
                 555333348999999999..9****999988775 PP

  == domain 2    score: 5.9 bits;  conditional E-value: 0.0072
   TIGR00099   15 keispetkealaklrekGikvvlaTGRsykevkeilkelgldplivanGaavvdeng 71  
                  k +sp ++e+++ ++++G++v++++G   + +++i ++ g d + ++ + ++++  g
  MMETSP1137-20121227|6658_1 1261 KMLSPGVLETIRLMQARGVRVFFVSGGFRQMIEPIAEACGVDKTDIYSNTLLFHADG 1317
                  6789999*******************9999************999999999998775 PP

  == domain 3    score: -0.6 bits;  conditional E-value: 0.67
   TIGR00099  189 KgsalqslaeklgislenviaiGDseNDie 218 
                  K++ +  l +++g+  ++v++iGD+  D+e
  MMETSP1137-20121227|6658_1 1334 KAKVVVDLKKEYGF--KKVVMIGDGATDME 1361
                  88888888887776..579******99987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1466 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       124  (0.0302292); expected 82.0 (0.02)
Passed bias filter:                      106  (0.0258411); expected 82.0 (0.02)
Passed Vit filter:                        31  (0.00755729); expected 4.1 (0.001)
Passed Fwd filter:                        16  (0.00390054); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              16  [number of targets reported over threshold]
# CPU time: 1.16u 0.17s 00:00:01.32 Elapsed: 00:00:01.02
# Mc/sec: 1897.02
//
Query:       MMETSP1137-20121227|6659_1  [L=399]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.9e-09   34.5  11.8    2.9e-09   34.5   8.2    2.2  2  TIGR00599 rad18: DNA repair protein rad18
     0.0012   16.1   2.5     0.0012   16.1   1.7    2.8  3  TIGR00570 cdk7: CDK-activating kinase assembly factor MAT1


Domain annotation for each model (and alignments):
>> TIGR00599  rad18: DNA repair protein rad18
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.5   8.2   1.4e-12   2.9e-09      15      79 ..      42     108 ..      40     187 .. 0.86
   2 ?   -1.8   1.3      0.15   3.1e+02     117     168 ..     212     261 ..     193     273 .. 0.55

  Alignments for each domain:
  == domain 1    score: 34.5 bits;  conditional E-value: 1.4e-12
   TIGR00599  15 tklpsLapldtslRChvCkdffkaPvltsCsHtFCslCiRrcLse.epkCPlCraedq.EskLRknf 79 
                 t+  s+  l+  lRC +C   ++ Pv t C H FC  Ci +cL+  + +CP Cr+       LRk+ 
  MMETSP1137-20121227|6659_1  42 TSTLSISLLNAELRCSICLGLLRDPVATECLHRFCNNCIEKCLRLgKKECPSCRSYVAtRRSLRKDH 108
                 6777888899*********************************973678*****8654134577665 PP

  == domain 2    score: -1.8 bits;  conditional E-value: 0.15
   TIGR00599 117 ssskkklieeeeakgvdeeseddlrsasssraaakkktadilqlssdtskrn 168
                 ++   ++ + +e++ +d+e ed+ +s  +  +  ++ t  +  +s++ ++++
  MMETSP1137-20121227|6659_1 212 PAEAAEVADVDETDVEDAEVEDEEASGDEA-GDEAEATE-PKVESEEETPSA 261
                 344556666677777777777777774333.33333332.222333334443 PP

>> TIGR00570  cdk7: CDK-activating kinase assembly factor MAT1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   1.7   6.1e-07    0.0012      24      52 ..      69      97 ..      63     111 .. 0.84
   2 ?   -0.1   1.1      0.05     1e+02     152     181 ..     125     154 ..     118     177 .. 0.58
   3 ?   -0.6   0.2     0.074   1.5e+02     131     165 ..     345     379 ..     329     396 .. 0.73

  Alignments for each domain:
  == domain 1    score: 16.1 bits;  conditional E-value: 6.1e-07
   TIGR00570 24 nvCghtlCesCvdllfvrGsgsCpeCdtp 52
                 +C h++C++C++     G  +Cp+C   
  MMETSP1137-20121227|6659_1 69 TECLHRFCNNCIEKCLRLGKKECPSCRSY 97
                48************************864 PP

  == domain 2    score: -0.1 bits;  conditional E-value: 0.05
   TIGR00570 152 elekeeeekkrlllqkleeeekkkkkkdkq 181
                 e+e++e+  k  +l    +++k+k +++ q
  MMETSP1137-20121227|6659_1 125 EQEEQEQMSKDNQLVLRQQQQKMKSQWQHQ 154
                 333333333444444444444444444433 PP

  == domain 3    score: -0.6 bits;  conditional E-value: 0.074
   TIGR00570 131 eviqknkekltreqeeleealelekeeeekkrlll 165
                  +i +n + + +e+ +le++ +  k ++++ +++ 
  MMETSP1137-20121227|6659_1 345 SIITRNGSATLSEELSLEQVYQKHKLDRKRLKMQY 379
                 57888999999999999998876665554444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (399 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       214  (0.0521697); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.35u 0.15s 00:00:00.50 Elapsed: 00:00:00.51
# Mc/sec: 1032.62
//
Query:       MMETSP1137-20121227|6661_1  [L=786]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0044   15.2   1.5     0.0044   15.2   1.0    1.9  2  TIGR02449 TIGR02449: TIGR02449 family protein
  ------ inclusion threshold ------
        1.7    5.4  10.2       0.61    6.8   2.1    2.1  2  TIGR01843 type_I_hlyD: type I secretion membrane fusion protein, HlyD family


Domain annotation for each model (and alignments):
>> TIGR02449  TIGR02449: TIGR02449 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   1.0   2.1e-06    0.0044       9      49 ..     401     441 ..     396     446 .. 0.92
   2 ?   -2.4   0.4      0.65   1.3e+03       3       3 ..     724     724 ..     673     743 .. 0.65

  Alignments for each domain:
  == domain 1    score: 15.2 bits;  conditional E-value: 2.1e-06
   TIGR02449   9 veaLleklerLkeeNrlLraqektlveERaqLleKNeqArq 49 
                 v +L + + +L+ eN  L+ q ++ +  RaqL   Neq r+
  MMETSP1137-20121227|6661_1 401 VSQLAHMCAQLQLENSELQSQFRQSRMGRAQLARLNEQLRS 441
                 6789999*******************************998 PP

  == domain 2    score: -2.4 bits;  conditional E-value: 0.65
   TIGR02449   3 q 3  
                 +
  MMETSP1137-20121227|6661_1 724 E 724
                 2 PP

>> TIGR01843  type_I_hlyD: type I secretion membrane fusion protein, HlyD family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.5    0.0045       9.3     210     265 ..     389     443 ..     370     463 .. 0.56
   2 ?    6.8   2.1    0.0003      0.61     144     239 ..     651     744 ..     612     751 .. 0.83

  Alignments for each domain:
  == domain 1    score: 2.9 bits;  conditional E-value: 0.0045
   TIGR01843 210 elaeleaeleklkaeldeleeklqeleqkfreevseelreaqarlaeleeelskar 265
                 + +++ ++++ l ++l+++ ++lq  +++++++ ++++   +a+la+l+e+l++  
  MMETSP1137-20121227|6661_1 389 ATKSASSDVNDLVSQLAHMCAQLQLENSELQSQFRQSR-MGRAQLARLNEQLRSSL 443
                 34455555555555555555555555555555555543.34555666665555443 PP

  == domain 2    score: 6.8 bits;  conditional E-value: 0.0003
   TIGR01843 144 qlesleaqikqleaeleglqaqlqalrqqleliseelealrkLkekglvsrlelLelere.raelqgelaeleaeleklkaeldeleeklqeleqkf 239
                 q    ++ +++    + g + ql++l++q + +s +l+ l kL  ++l    ++L++ere ra+lq++l ++  e+e+l+++ ++l ++lq l++++
  MMETSP1137-20121227|6661_1 651 QPSDKDRDVASTHHLRGGGDVQLTNLTKQHDDASMNLTKLTKLLPRELL---AMLQSEREvRASLQAQLVQNSIEIESLRRQHADLVAQLQALQNDA 744
                 33445666777778888999999**********************9996...5788888835689**************************999976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (786 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       146  (0.0355924); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.17s 00:00:00.66 Elapsed: 00:00:01.06
# Mc/sec: 978.71
//
Query:       MMETSP1137-20121227|6662_1  [L=84]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (84 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        39  (0.00950756); expected 82.0 (0.02)
Passed bias filter:                       30  (0.00731351); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.13s 00:00:00.26 Elapsed: 00:00:00.28
# Mc/sec: 382.31
//
Query:       MMETSP1137-20121227|6663_1  [L=334]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (334 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       128  (0.0312043); expected 82.0 (0.02)
Passed bias filter:                      109  (0.0265724); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.16s 00:00:00.41 Elapsed: 00:00:00.71
# Mc/sec: 620.91
//
Query:       MMETSP1137-20121227|6664_1  [L=354]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-41  140.1   0.0    1.9e-41  139.6   0.0    1.2  1  TIGR00447 pth: peptidyl-tRNA hydrolase


Domain annotation for each model (and alignments):
>> TIGR00447  pth: peptidyl-tRNA hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  139.6   0.0   4.7e-45   1.9e-41       3     159 ..      94     249 ..      92     277 .. 0.89

  Alignments for each domain:
  == domain 1    score: 139.6 bits;  conditional E-value: 4.7e-45
   TIGR00447   3 livGlgNpgkkYaeTRHNvGfalldkLasrlelslkeekkflgkkeallvkekkviLlkpttymNlSGeavkavvdfykikpeellvvhDeldlplGkvrlkekgsaggHNGlksiishlgteefarLriGigkengskkvkeavlskfskseedll 159
                 +++Gl Npg+ Ya TRHNvG++ l+ La  ++   + + +     +       +++L++p  +mNlSG++v+++++++ +  e++++ hDeldlp+G+v++k +g++ggH G+ s i +lg  +f r+riG+g++ ++ +v ++vlskf+ +e+  l
  MMETSP1137-20121227|6664_1  94 MLIGLCNPGNSYAGTRHNVGASALELLATSNSNFSEWKLEAGALISSGRFGASCAVLARPVSFMNLSGRVVAELIAHFGMPLERVVILHDELDLPPGRVKVKRGGGSGGHRGVASCIDMLG-ADFWRVRIGVGRPAQRADVPNFVLSKFTAAEHISL 249
                 789*************************9988766655566667888899999*******************************************************************5.79***************************986543 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (354 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        98  (0.0238908); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.27u 0.14s 00:00:00.41 Elapsed: 00:00:00.30
# Mc/sec: 1557.47
//
Query:       MMETSP1137-20121227|6665_1  [L=439]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      1e-12   45.9   0.1    1.4e-12   45.5   0.0    1.2  1  TIGR03467 HpnE: squalene-associated FAD-dependent desaturase
    9.8e-09   32.2   0.2    1.3e-08   31.8   0.1    1.1  1  TIGR02731 phytoene_desat: phytoene desaturase
    2.1e-08   31.2   0.0    3.5e-08   30.5   0.0    1.3  1  TIGR01316 gltA: glutamate synthase (NADPH), homotetrameric
    5.7e-07   26.3   0.0    7.5e-07   25.9   0.0    1.1  1  TIGR00562 proto_IX_ox: protoporphyrinogen oxidase
    1.6e-05   21.9   0.1    2.5e-05   21.2   0.1    1.3  1  TIGR02732 zeta_caro_desat: carotene 7,8-desaturase
    2.4e-05   21.0   1.3    3.3e-05   20.6   0.9    1.1  1  TIGR02734 crtI_fam: phytoene desaturase
    5.8e-05   18.5   0.0    8.3e-05   18.0   0.0    1.1  1  TIGR03315 Se_ygfK: putative selenate reductase, YgfK subunit
    0.00016   18.0   0.1    0.00023   17.5   0.1    1.1  1  TIGR03997 mycofact_OYE_2: mycofactocin system FadH/OYE family oxidoreductase 2
    0.00028   17.7   0.1    0.00041   17.1   0.1    1.1  1  TIGR01317 GOGAT_sm_gam: glutamate synthase, NADH/NADPH, small subunit
    0.00042   16.8   0.0    0.00065   16.2   0.0    1.2  1  TIGR01318 gltD_gamma_fam: glutamate synthase, small subunit
    0.00068   16.4   0.1    0.00098   15.9   0.1    1.2  1  TIGR01988 Ubi-OHases: ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family
    0.00068   16.2   0.2     0.0011   15.6   0.1    1.2  1  TIGR02733 desat_CrtD: C-3',4' desaturase CrtD
     0.0033   14.3   0.0     0.0049   13.7   0.0    1.2  1  TIGR04046 MSMEG_0569_nitr: flavin-dependent oxidoreductase, MSMEG_0569 family
     0.0035   13.9   0.5     0.0046   13.5   0.3    1.1  1  TIGR01813 flavo_cyto_c: flavocytochrome c
      0.004   12.8   0.1     0.0053   12.4   0.0    1.1  1  TIGR01372 soxA: sarcosine oxidase, alpha subunit family
     0.0043   14.1   0.0     0.0067   13.5   0.0    1.2  1  TIGR03366 HpnZ_proposed: putative phosphonate catabolism associated alcohol dehydrogenase
     0.0062   13.2   0.1      0.009   12.7   0.1    1.2  1  TIGR01984 UbiH: 2-polyprenyl-6-methoxyphenol 4-hydroxylase
     0.0078   13.3   0.1      0.012   12.6   0.0    1.2  1  TIGR00292 TIGR00292: thiazole biosynthesis enzyme
  ------ inclusion threshold ------
      0.013   12.4   0.3      0.026   11.4   0.2    1.5  1  TIGR03197 MnmC_Cterm: tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain
      0.025   11.1   0.0      0.035   10.6   0.0    1.1  1  TIGR01350 lipoamide_DH: dihydrolipoyl dehydrogenase
      0.031   11.3   0.0      0.048   10.6   0.0    1.2  1  TIGR03169 Nterm_to_SelD: pyridine nucleotide-disulfide oxidoreductase family protein
      0.069   10.1   1.4       0.11    9.4   1.0    1.2  1  TIGR02352 thiamin_ThiO: glycine oxidase ThiO
       0.11    9.4   4.2      0.055   10.4   1.0    1.8  2  TIGR03364 HpnW_proposed: FAD dependent oxidoreductase TIGR03364


Domain annotation for each model (and alignments):
>> TIGR03467  HpnE: squalene-associated FAD-dependent desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.5   0.0   7.9e-15   1.4e-12       1     110 [.      77     190 ..      77     228 .. 0.77

  Alignments for each domain:
  == domain 1    score: 45.5 bits;  conditional E-value: 7.9e-15
   TIGR03467   1 vvvvGgGlAGLaAAveLaraG.vrvtllEarrqlGGRar.sfedgslgetiDngqHvllgaytellallarvgaedrlqlerleltfldpegres...rLrlsrlpaPlhlakgl 110
                 vvvvG+G+ GL+ A +L++ G v+vt+++a+++ GG ++  f   s +++   gqH   g y++++all+ +  +d+l+  ++e   + p+g ++   + r ++   P  + ++l
  MMETSP1137-20121227|6665_1  77 VVVVGAGWGGLSVAHALSKSGnVHVTVVDAAPRPGGLVSdGFLTTSGTRRAEAGQHGFWGEYHNIFALLDELSISDALT-GYAEQGQYSPDGLQAvwpVYREQKQELPTGIGQAL 190
                 89*******************99*************9863788888889****************************99.55555555555544323355556666666666665 PP

>> TIGR02731  phytoene_desat: phytoene desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.8   0.1   7.4e-11   1.3e-08       1      76 [.      76     154 ..      76     160 .. 0.87

  Alignments for each domain:
  == domain 1    score: 31.8 bits;  conditional E-value: 7.4e-11
   TIGR02731   1 rvaiagaglaglsaakyladaghtpi.vleardvlggkvaa.wkdedg.dwyetglhiffgaypnllqllkelniedrl 76 
                 rv++ gag  gls+a+ l+ +g + + v++a+   gg+v+  +    g    e+g h f+g y n+  ll+el+i+d l
  MMETSP1137-20121227|6665_1  76 RVVVVGAGWGGLSVAHALSKSGNVHVtVVDAAPRPGGLVSDgFLTTSGtRRAEAGQHGFWGEYHNIFALLDELSISDAL 154
                 89********************98764889999******8535555551679*************************88 PP

>> TIGR01316  gltA: glutamate synthase (NADPH), homotetrameric
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.5   0.0     2e-10   3.5e-08     108     175 ..      49     117 ..      23     122 .. 0.84

  Alignments for each domain:
  == domain 1    score: 30.5 bits;  conditional E-value: 2e-10
   TIGR01316 108 alerfvadyarehGieeeeekapstkkkvaviGaGpaGlavaselakkGh.evtvfealhkpGGvlayG 175
                 +le  v+   r   +e+ ++ ++    +v v+GaG  Gl+va+ l+k G  +vtv +a ++pGG++  G
  MMETSP1137-20121227|6665_1  49 QLEADVGSEHRCFEVEKYSNNEDEEPRRVVVVGAGWGGLSVAHALSKSGNvHVTVVDAAPRPGGLVSDG 117
                 57777777778888888899999999***********************648*************9877 PP

>> TIGR00562  proto_IX_ox: protoporphyrinogen oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.9   0.0   4.2e-09   7.5e-07       3      80 ..      75     154 ..      73     179 .. 0.82

  Alignments for each domain:
  == domain 1    score: 25.9 bits;  conditional E-value: 4.2e-09
   TIGR00562   3 kkvvvvGgGisGLciayalekerpdvelvlvEakdRvGGkiy..TrkesG.yllEkGprtlleskegildllkdlGleavl 80 
                 + vvvvG+G  GL++a+al+k   +v +++v+a +R GG +       sG    E G + + ++ + i  ll +l + + l
  MMETSP1137-20121227|6665_1  75 RRVVVVGAGWGGLSVAHALSKS-GNVHVTVVDAAPRPGGLVSdgFLTTSGtRRAEAGQHGFWGEYHNIFALLDELSISDAL 154
                 68*******************9.89**************998664555564556677777776666677777777776655 PP

>> TIGR02732  zeta_caro_desat: carotene 7,8-desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.1   1.4e-07   2.5e-05       1      76 [.      76     154 ..      76     162 .. 0.87

  Alignments for each domain:
  == domain 1    score: 21.2 bits;  conditional E-value: 1.4e-07
   TIGR02732   1 kvaivgaglaglatavelvdagh.evelyesrsflggkvg.swvdkdg.nhiemglhvffgcyanlfkllkkvgaldnl 76 
                 +v +vgag  gl+ a  l  +g  +v + ++ +  gg v   +    g    e g h f+g y+n+f+ll+ +   d l
  MMETSP1137-20121227|6665_1  76 RVVVVGAGWGGLSVAHALSKSGNvHVTVVDAAPRPGGLVSdGFLTTSGtRRAEAGQHGFWGEYHNIFALLDELSISDAL 154
                 799*****************99548************996247777762579*******************99887766 PP

>> TIGR02734  crtI_fam: phytoene desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   0.9   1.8e-07   3.3e-05       1      36 [.      77     113 ..      77     125 .. 0.88

  Alignments for each domain:
  == domain 1    score: 20.6 bits;  conditional E-value: 1.8e-07
   TIGR02734   1 avViGaGlgGLAlAirLaaaG.ievtvlekrdkpGGR 36 
                 +vV+GaG gGL++A  L + G ++vtv+++  +pGG 
  MMETSP1137-20121227|6665_1  77 VVVVGAGWGGLSVAHALSKSGnVHVTVVDAAPRPGGL 113
                 79*****************99679***********94 PP

>> TIGR03315  Se_ygfK: putative selenate reductase, YgfK subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.0   4.7e-07   8.3e-05     530     577 ..      67     115 ..      26     118 .. 0.77

  Alignments for each domain:
  == domain 1    score: 18.0 bits;  conditional E-value: 4.7e-07
   TIGR03315 530 kpqlksekhkvaviGaGPaGlsagyflaraG.lpvtvfekkekagGvvk 577
                 + + ++e ++v v+GaG  Gls+++ l+++G + vtv++   ++gG v+
  MMETSP1137-20121227|6665_1  67 SNNEDEEPRRVVVVGAGWGGLSVAHALSKSGnVHVTVVDAAPRPGGLVS 115
                 3445566679********************9568************997 PP

>> TIGR03997  mycofact_OYE_2: mycofactocin system FadH/OYE family oxidoreductase 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.1   1.3e-06   0.00023     369     419 ..      64     115 ..      50     128 .. 0.84

  Alignments for each domain:
  == domain 1    score: 17.5 bits;  conditional E-value: 1.3e-06
   TIGR03997 369 eavtlkkarrrkkvlvvGgGPaGleaaataarrGh.rvtllereeelGGqvk 419
                 e+++ ++ +++++v+vvG+G +Gl+ a+  ++ G  +vt+++ + ++GG v 
  MMETSP1137-20121227|6665_1  64 EKYSNNEDEEPRRVVVVGAGWGGLSVAHALSKSGNvHVTVVDAAPRPGGLVS 115
                 45555666778*********************99758************875 PP

>> TIGR01317  GOGAT_sm_gam: glutamate synthase, NADH/NADPH, small subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.1   2.3e-06   0.00041     144     185 ..      75     117 ..      65     121 .. 0.89

  Alignments for each domain:
  == domain 1    score: 17.1 bits;  conditional E-value: 2.3e-06
   TIGR01317 144 kkvavvGsGPaGlaaadqlnraGh.tvtvferedrvGGllryG 185
                 ++v vvG+G  Gl+ a+ l+++G  +vtv + + r GGl+  G
  MMETSP1137-20121227|6665_1  75 RRVVVVGAGWGGLSVAHALSKSGNvHVTVVDAAPRPGGLVSDG 117
                 689********************746*************9877 PP

>> TIGR01318  gltD_gamma_fam: glutamate synthase, small subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0   3.6e-06   0.00065     141     183 ..      74     117 ..      66     122 .. 0.90

  Alignments for each domain:
  == domain 1    score: 16.2 bits;  conditional E-value: 3.6e-06
   TIGR01318 141 gkrvaviGaGpaGlacadvlaraG.vkvvvfdrypeiGGlltfG 183
                  +rv v+GaG  Gl+ a  l+++G v+v+v d  p+ GGl++ G
  MMETSP1137-20121227|6665_1  74 PRRVVVVGAGWGGLSVAHALSKSGnVHVTVVDAAPRPGGLVSDG 117
                 589*******************99789*************9766 PP

>> TIGR01988  Ubi-OHases: ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.1   5.5e-06   0.00098       2      35 ..      77     110 ..      76     141 .. 0.90

  Alignments for each domain:
  == domain 1    score: 15.9 bits;  conditional E-value: 5.5e-06
   TIGR01988   2 ivIvGgGlvGlalAlaLassadlkvalveakaae 35 
                 +v+vG+G  Gl++A aL++s++++v++v+a++ +
  MMETSP1137-20121227|6665_1  77 VVVVGAGWGGLSVAHALSKSGNVHVTVVDAAPRP 110
                 8****************************99865 PP

>> TIGR02733  desat_CrtD: C-3',4' desaturase CrtD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.1     6e-06    0.0011       3      41 ..      76     115 ..      74     127 .. 0.91

  Alignments for each domain:
  == domain 1    score: 15.6 bits;  conditional E-value: 6e-06
   TIGR02733   3 svvviGaGiaGltaaallakrG.levtlleaaaqvGGCas 41 
                 +vvv+GaG +Gl  a  l+k G ++vt+++aa  +GG  s
  MMETSP1137-20121227|6665_1  76 RVVVVGAGWGGLSVAHALSKSGnVHVTVVDAAPRPGGLVS 115
                 79******************99679***********9765 PP

>> TIGR04046  MSMEG_0569_nitr: flavin-dependent oxidoreductase, MSMEG_0569 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   0.0   2.7e-05    0.0049     116     196 ..      30     109 ..      13     113 .. 0.78

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 2.7e-05
   TIGR04046 116 eltadqvvvatggyhtpaipklaerlpadvkqlhseeyrnaeqlpdGavlvvGsGqsGaqiaedlhlagrkvhl.avGsaPr 196
                 +lta + +v  + yh  +i+   + + ++ +  + e+y n e+     v+vvG+G  G  +a  l  +g  vh+ +v  aPr
  MMETSP1137-20121227|6665_1  30 QLTAARSMVRVSWYHANHIQL-EADVGSEHRCFEVEKYSNNEDEEPRRVVVVGAGWGGLSVAHALSKSGN-VHVtVVDAAPR 109
                 667777788888888887765.455778888999999999999999999999999999999999998885.56515567787 PP

>> TIGR01813  flavo_cyto_c: flavocytochrome c
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   0.3   2.6e-05    0.0046       2      37 ..      77     112 ..      76     130 .. 0.89

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 2.6e-05
   TIGR01813   2 vvvvGsGlAGlsaaleakkaglaevvvleKapviGG 37 
                 vvvvG+G  Gls a ++ k+g  +v v++ ap  GG
  MMETSP1137-20121227|6665_1  77 VVVVGAGWGGLSVAHALSKSGNVHVTVVDAAPRPGG 112
                 9*******************************9999 PP

>> TIGR01372  soxA: sarcosine oxidase, alpha subunit family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.4   0.0     3e-05    0.0053     171     209 ..      77     116 ..      43     129 .. 0.86

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 3e-05
   TIGR01372 171 vLvvGaGpaGLaaAraAaraG.arvilvdeqaeaGGslls 209
                 v+vvGaG  GL+ A+a +++G ++v++vd  ++ GG + +
  MMETSP1137-20121227|6665_1  77 VVVVGAGWGGLSVAHALSKSGnVHVTVVDAAPRPGGLVSD 116
                 89******************9569************8766 PP

>> TIGR03366  HpnZ_proposed: putative phosphonate catabolism associated alcohol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   0.0   3.8e-05    0.0067     153     190 ..      71     108 ..      29     118 .. 0.92

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 3.8e-05
   TIGR03366 153 dlegrrvlvlGaGmLGLtaaaaaeerGasrviavDpsa 190
                 d e rrv+v+GaG  GL+ a a+++ G  +v++vD ++
  MMETSP1137-20121227|6665_1  71 DEEPRRVVVVGAGWGGLSVAHALSKSGNVHVTVVDAAP 108
                 46789******************************987 PP

>> TIGR01984  UbiH: 2-polyprenyl-6-methoxyphenol 4-hydroxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.7   0.1     5e-05     0.009       2      32 ..      77     107 ..      76     117 .. 0.94

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 5e-05
   TIGR01984   2 viivGgglvGlslAlaLsrksklkialieak 32 
                 v++vG+g  Gls+A aLs+ +++++++++a 
  MMETSP1137-20121227|6665_1  77 VVVVGAGWGGLSVAHALSKSGNVHVTVVDAA 107
                 89**************************986 PP

>> TIGR00292  TIGR00292: thiazole biosynthesis enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.6   0.0   6.9e-05     0.012      23      60 ..      76     114 ..      63     122 .. 0.85

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 6.9e-05
   TIGR00292  23 DviivGaGpsGLtaayylakeg.lkvvvlerklaiGGGs 60 
                  v++vGaG  GL+ a+ l+k g + v v++    +GG +
  MMETSP1137-20121227|6665_1  76 RVVVVGAGWGGLSVAHALSKSGnVHVTVVDAAPRPGGLV 114
                 59********************99****99988888755 PP

>> TIGR03197  MnmC_Cterm: tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.2   0.00015     0.026       2      35 ..      77     111 ..      76     116 .. 0.91

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 0.00015
   TIGR03197   2 vavIGaGiAgaalalsLarrG.vqvtllekdekla 35 
                 v+v+GaG  g+++a++L++ G v+vt+++++++++
  MMETSP1137-20121227|6665_1  77 VVVVGAGWGGLSVAHALSKSGnVHVTVVDAAPRPG 111
                 89******************9789*****999887 PP

>> TIGR01350  lipoamide_DH: dihydrolipoyl dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0    0.0002     0.035     166     204 ..      70     109 ..      45     112 .. 0.86

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 0.0002
   TIGR01350 166 lkevpeslvivGgGviGvEfasifaklG.vkvtvielldr 204
                  +e p+++v+vG+G  G+ +a +++k G v+vtv+++++r
  MMETSP1137-20121227|6665_1  70 EDEEPRRVVVVGAGWGGLSVAHALSKSGnVHVTVVDAAPR 109
                 4688********************9998679****99886 PP

>> TIGR03169  Nterm_to_SelD: pyridine nucleotide-disulfide oxidoreductase family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   0.00027     0.048     136     167 ..      65      96 ..      56     105 .. 0.81

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 0.00027
   TIGR03169 136 lekakaseetkslavvGgGaagvElalalrkr 167
                 + +++++ee+++++vvG+G +g+ +a al k 
  MMETSP1137-20121227|6665_1  65 KYSNNEDEEPRRVVVVGAGWGGLSVAHALSKS 96 
                 44455688899****************99875 PP

>> TIGR02352  thiamin_ThiO: glycine oxidase ThiO
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   1.0    0.0006      0.11       1      30 [.      77     107 ..      77     117 .. 0.86

  Alignments for each domain:
  == domain 1    score: 9.4 bits;  conditional E-value: 0.0006
   TIGR02352   1 vlviGgGviGlsvAveLakrg.hkvtllekd 30 
                 v+v+G+G  GlsvA+ L+k g  +vt+++ +
  MMETSP1137-20121227|6665_1  77 VVVVGAGWGGLSVAHALSKSGnVHVTVVDAA 107
                 79****************9983479999876 PP

>> TIGR03364  HpnW_proposed: FAD dependent oxidoreductase TIGR03364
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   1.0   0.00031     0.055       2      37 ..      76     112 ..      75     133 .. 0.88
   2 ?   -1.8   0.0       1.5   2.7e+02      16      41 ..     239     264 ..     237     273 .. 0.87

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 0.00031
   TIGR03364   2 dvvvvGaGivGlahAlaaarrG.lkVtvierssraaG 37 
                 +vvvvGaG  Gl+ A a ++ G ++Vtv++ ++r+ G
  MMETSP1137-20121227|6665_1  76 RVVVVGAGWGGLSVAHALSKSGnVHVTVVDAAPRPGG 112
                 69********************558*****9999977 PP

  == domain 2    score: -1.8 bits;  conditional E-value: 1.5
   TIGR03364  16 AlaaarrGlkVtvierssraaGAsvr 41 
                 A + a+r ++V v+ r+s+ +G  vr
  MMETSP1137-20121227|6665_1 239 AXRWAKRAWHVHVFTRTSSSHGFGVR 264
                 66678999*************99998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (439 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       135  (0.0329108); expected 82.0 (0.02)
Passed bias filter:                      124  (0.0302292); expected 82.0 (0.02)
Passed Vit filter:                        63  (0.0153584); expected 4.1 (0.001)
Passed Fwd filter:                        23  (0.00560702); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              23  [number of targets reported over threshold]
# CPU time: 0.51u 0.18s 00:00:00.69 Elapsed: 00:00:00.56
# Mc/sec: 1016.55
//
Query:       MMETSP1137-20121227|6666_1  [L=200]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.021   12.5   0.0      0.029   12.1   0.0    1.2  1  TIGR02237 recomb_radB: DNA repair and recombination protein RadB


Domain annotation for each model (and alignments):
>> TIGR02237  recomb_radB: DNA repair and recombination protein RadB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   7.1e-06     0.029      47     124 ..     109     186 ..      88     193 .. 0.75

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 7.1e-06
   TIGR02237  47 DtEGlsleRlkqiaedrfekvlsklivfevfdldeqekaiqkaskliekekadlvvvDslt.alyRleksddrislkle 124
                    G+s+eRl q ae ++e+ + +l+  e++  +  ++    +   +    a l +vD l   +y  +k++++ ++ + 
  MMETSP1137-20121227|6666_1 109 QGGGFSVERLMQFAERDYERSSRMLVPPEPHVATPHDQTFLVTICTVGAGAAVLWIVDQLLlRYYQYKKNKAK-AAAKA 186
                 4456*****************9999999999998888877777777777789999999976155555555554.44444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (200 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       126  (0.0307167); expected 82.0 (0.02)
Passed bias filter:                      118  (0.0287665); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.20u 0.18s 00:00:00.38 Elapsed: 00:00:00.35
# Mc/sec: 754.22
//
Query:       MMETSP1137-20121227|6667_1  [L=663]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (663 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        86  (0.0209654); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.16s 00:00:00.56 Elapsed: 00:00:00.41
# Mc/sec: 2134.36
//
Query:       MMETSP1137-20121227|6668_1  [L=332]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (332 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       100  (0.0243784); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.13s 00:00:00.37 Elapsed: 00:00:00.40
# Mc/sec: 1095.51
//
Query:       MMETSP1137-20121227|6669_1  [L=308]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (308 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       141  (0.0343735); expected 82.0 (0.02)
Passed bias filter:                      127  (0.0309605); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.16s 00:00:00.43 Elapsed: 00:00:00.43
# Mc/sec: 945.41
//
Query:       MMETSP1137-20121227|6670_1  [L=181]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.1e-10   36.8   0.0    4.8e-09   34.3   0.0    1.9  1  TIGR00004 TIGR00004: putative endoribonuclease L-PSP
  ------ inclusion threshold ------
      0.029   12.3   0.0       0.04   11.9   0.0    1.5  1  TIGR03610 RutC: pyrimidine utilization protein C


Domain annotation for each model (and alignments):
>> TIGR00004  TIGR00004: putative endoribonuclease L-PSP
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.3   0.0   2.3e-12   4.8e-09       9     124 ..      43     178 ..      39     179 .. 0.67

  Alignments for each domain:
  == domain 1    score: 34.3 bits;  conditional E-value: 2.3e-12
   TIGR00004   9 APaaigpYsqavkvgnllfvsGqipldpetgelvee....gdveeqaeqvlenlk....aileaagl...sledvvkvtvflkdlndFae....vn...evyakyfk..eekpaRsavevaaLPkdvkvEieaiav 124
                  P+++g+Y+  +++gnl+f+sG +p++ + ++l ++      ++e+a+++ e +       l+a      +++++vk+  f++  +++++    +n   +++ak f   + + aRsav+  +LP +v vEie+ia 
  MMETSP1137-20121227|6670_1  43 MPKPLGSYTPILRTGNLVFLSGHVPFTEDMKTLRTGkvstDYTTEEANKIAEFIGleliSTLKAELGdldKVTRIVKLVGFVNCPAEYTDqpkvINgcsDLFAKVFGpeRGTHARSAVGTNSLPFNVPVEIEMIAE 178
                 69************************987665553200002456788888765432111345555441124567899999988766665411114522234555555766789*********************95 PP

>> TIGR03610  RutC: pyrimidine utilization protein C
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   1.9e-05      0.04      11      50 ..      43      82 ..      38     179 .. 0.86

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 1.9e-05
   TIGR03610 11 tskplapfvpgtladgvvyvsgtlpldkdnnvvhvgdaaa 50
                 +kpl  ++p   + ++v++sg +p+ +d + + +g  ++
  MMETSP1137-20121227|6670_1 43 MPKPLGSYTPILRTGNLVFLSGHVPFTEDMKTLRTGKVST 82
                579**************************99998876543 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (181 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        77  (0.0187713); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.21u 0.15s 00:00:00.36 Elapsed: 00:00:00.33
# Mc/sec: 723.94
//
Query:       MMETSP1137-20121227|6671_1  [L=502]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.5e-52  175.8   6.8    3.4e-52  175.3   4.7    1.0  1  TIGR00894 2A0114euk: Na(+)-dependent inorganic phosphate cotransporter
    4.3e-34  115.9  13.7    5.7e-34  115.5   9.5    1.1  1  TIGR00893 2A0114: D-galactonate transporter
    4.5e-23   79.7   3.5    1.3e-22   78.2   2.2    2.0  1  TIGR00881 2A0104: phosphoglycerate transporter family protein
    6.3e-17   59.4  14.6      2e-16   57.7  10.1    1.8  1  TIGR00895 2A0115: MFS transporter, aromatic acid:H+ symporter (AAHS) family
    5.7e-13   46.3   0.7    5.7e-13   46.3   0.5    1.6  2  TIGR00890 2A0111: oxalate/formate antiporter
      1e-11   42.9   5.5      1e-11   42.9   3.8    2.7  3  TIGR00880 2_A_01_02: multidrug resistance protein
    2.1e-08   31.2   0.5    2.1e-08   31.2   0.3    1.6  2  TIGR00711 efflux_EmrB: drug resistance MFS transporter, drug:H+ antiporter-2 (14 Spanner) (DHA2) family
    6.7e-08   29.8   0.0      9e-08   29.4   0.0    1.1  1  TIGR00712 glpT: glycerol-3-phosphate transporter
    6.2e-06   23.1   0.7    1.1e-05   22.2   0.5    1.4  1  TIGR00898 2A0119: cation transport protein
    6.4e-06   22.8   1.4    1.2e-05   21.9   1.0    1.4  1  TIGR00879 SP: MFS transporter, sugar porter (SP) family
     0.0021   15.4  13.9     0.0052   14.1   2.4    2.6  2  TIGR00710 efflux_Bcr_CflA: drug resistance transporter, Bcr/CflA subfamily
  ------ inclusion threshold ------
      0.088    8.4   4.6      0.013   11.2   0.3    1.6  2  TIGR01299 synapt_SV2: synaptic vesicle protein SV2


Domain annotation for each model (and alignments):
>> TIGR00894  2A0114euk: Na(+)-dependent inorganic phosphate cotransporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  175.3   4.7     1e-54   3.4e-52      76     451 ..     119     497 ..     112     500 .. 0.91

  Alignments for each domain:
  == domain 1    score: 175.3 bits;  conditional E-value: 1e-54
   TIGR00894  76 klqGlilssvfygslilqipvGylakkygtkkvigaalllssvlslliPiaaavgvalvivlRvlqGlaeglvspaqhellakWiPPkERsrlvsavlsGaqlGtlivlpisGlicesdlgWpavfYifgivgtvvlilwlvlvyddPseHpkisesEkkyiekslveevsssrkslPiKailkSl....p.vwaivvasvghiwgleilltylPtfiksvlhlnirenGllSsLPyllafllavlass.ladyllsrkklsktavrKlftaiglllkglivv.alayls.snaisaiilltlanalaglvlsGvlinaldlaPryagiikgvttligslaglissllvgqllkqdsksaWkkvFllaalvavislifyllfas 451
                 +  G++ls+ ++g+l++qi +G la+ +g+ +v+  + + + ++++l   a   +v  +    vl G+ +g++ p + + l kW+PP+ERs++ +a  +G + G l++lp sG ++ + lgW + f ++++ ++++ ++w +l + +P++  +ise E++y+ + l+++  +s+++lP+K +  S+    p +wai  +++++++g   l+ + Pt+ k+ l++      +   LP +l f +++l  + l  y+ ++  +   + r+ ft++g+++ gl+++  ++  s   a    +   l++a+a+l+ +G ++n +d+a   +g++ g+ +  +sl + + +llv+ ll+  +  +W  vF   a v++ + +++  f++
  MMETSP1137-20121227|6671_1 119 HERGALLSAYSLGYLLTQIGGGKLAESLGSDRVLLLSTVAGAICTALSGNAR--SVRALWWAQVLLGASQGPLFPVSMAHLSKWLPPEERSSASTALDTGITAGSLVALPCSGALASL-LGWRSTFKLYAALSAAFAVAWALLAAPSPNKCAYISEAERAYLAQALTQHXGTSKGKLPLKRLSISKmlslPaIWAIFCSHMAFNFGVYFLTSWGPTYYKDSLGVRPEDASFAFFLPPALNFATKLLLNKpLERYMRASXHMTTLQCRRAFTVLGFGGSGLAMLlVIPAQSiFGAGGSTACWALTSAFAALHPAGXKANYMDIARTSSGVVSGLGNTFASLSSYVGPLLVAWLLRAFP--SWLPVFATIASVNLAAATVFASFST 497
                 568*******************************************977665..555667889*******************************************************.9************************************************************8766552222347***************************************************987654999************************99976523344444445555667778899***********************************************9877..7****************99999886 PP

>> TIGR00893  2A0114: D-galactonate transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  115.5   9.5   1.7e-36   5.7e-34      10     392 ..     100     489 ..      94     495 .. 0.87

  Alignments for each domain:
  == domain 1    score: 115.5 bits;  conditional E-value: 1.7e-36
   TIGR00893  10 ratlSiAavtlkedLglsaaqyglvfsafsigyvlfqlpggllldriGakktlavaivlWglftllqafatalvslivlRvllGlaEaplfPgiikivasWFPakeratavsifnsaqalgaiiggplvgwilvefsWqlvFiieGvlaiilgvlilkvikdkpekakvlkeeeksivvggllaeqa.gkknseakkaqikelLkdrrviglalgqflvnillyffltwfplylkqerglslleagllaslpaivgfvgmvlggilsdlllkkg...kslvlarktaiiaglvlsllliatnlvaskiaalalvalaffgkglaai...lwavisdvlskeiagltgGlinllGnlagivgPivigaiaattGsfagallvvaalaliga 392
                 r++++   v++ e++g +  + g   sa+s+gy+l q+ gg l + +G+  +l ++ v  ++ t+l + a ++ +l  + vllG++ +plfP     +++W P++er++a+     ++  g++++ p +g ++  ++W++ F + ++l++  +v++  +    p+k +  +e+e++ ++++l      +k++   k+ +i ++L  + +++++ + ++ n ++yf+ +w p+y k+++g+ ++ a++   lp ++ f   +l+       ++       l  +r+++++++  + l++ ++  ++s   a  + a + + +++aa+   +     + + + ++g++ Gl n+++ l++ vgP+++ ++  +  s+ ++++ +a + l++a
  MMETSP1137-20121227|6671_1 100 RMAIGPLLVSIAEEMGCEPHERGALLSAYSLGYLLTQIGGGKLAESLGSDRVLLLSTVAGAICTALSGNARSVRALWWAQVLLGASQGPLFPVSMAHLSKWLPPEERSSASTALDTGITAGSLVALPCSGALASLLGWRSTFKLYAALSAAFAVAWALLAAPSPNKCAYISEAERAYLAQALTQHXGtSKGKLPLKRLSISKMLSLPAIWAIFCSHMAFNFGVYFLTSWGPTYYKDSLGVRPEDASFAFFLPPALNFATKLLLNKPLERYMRASxhmTTLQCRRAFTVLGFGGSGLAMLLVIPAQSIFGAGGSTACWALTSAFAALhpaGXKANYMDIARTSSGVVSGLGNTFASLSSYVGPLLVAWLLRAFPSWLPVFATIASVNLAAA 489
                 55555566889*************************************************************************************************************************************************99999999999988888888888886655446999999***************************************************************9988877655555555546778889******9987776666666555555555555555555555544400044444444668899999**********************************9999998886 PP

>> TIGR00881  2A0104: phosphoglycerate transporter family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.2   2.2   3.7e-25   1.3e-22      11     270 ..     100     360 ..      90     478 .. 0.84

  Alignments for each domain:
  == domain 1    score: 78.2 bits;  conditional E-value: 3.7e-25
   TIGR00881  11 RknfalalpelqeeiglsktdlGlllsafsiaYgiskfvvgvvsDrvsarvflaigLilvaivnlflgfssslwvliallalnGlfqglgwppcgrlltkwfsrserGtvvaiwnishnvggallpplvllaialllswhvvfivpgiiaiivslilllllrdspqsvg.lpkleelrnee.keedkekkeeeltkkeillqyvlknkvlwlislvnvfvyvvrtgiedWvplYltqekglskekasvavtlfelaglvGtl 270
                 R  +  +l ++ ee+g +  + G llsa s+ Y + ++  g ++   ++  +l++  ++ ai++ + g + s+ +l  + +l G  qg+ +p++   l kw +++er ++   + ++ + g  ++ p    a+a ll w+++f + +++   +++ + ll  +sp+++  ++++e  +  +  +++  + + +l  k+  + ++l  + +w i  + ++  +  +++++W+p+Y ++++g+  e+as+a++l+    +   l
  MMETSP1137-20121227|6671_1 100 RMAIGPLLVSIAEEMGCEPHERGALLSAYSLGYLLTQIGGGKLAESLGSDRVLLLSTVAGAICTALSGNARSVRALWWAQVLLGASQGPLFPVSMAHLSKWLPPEERSSASTALDTGITAGSLVALP-CSGALASLLGWRSTFKLYAALSAAFAVAWALLAAPSPNKCAyISEAERAYLAQaLTQHXGTSKGKLPLKRLSISKMLSLPAIWAIFCSHMAFNFGVYFLTSWGPTYYKDSLGVRPEDASFAFFLPPALNFATKL 360
                 555556677899*************************************9999999*************************************************************9866555554.88999**********************************975899999888776888888888899999999**************************************************998665555555 PP

>> TIGR00895  2A0115: MFS transporter, aromatic acid:H+ symporter (AAHS) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.7  10.1   5.9e-19     2e-16      34     398 .]     101     468 ..      71     468 .. 0.76

  Alignments for each domain:
  == domain 1    score: 57.7 bits;  conditional E-value: 5.9e-19
   TIGR00895  34 lvlgfaapalskewgldkvelGfllsagLiGmvlGallfgplaDrigRkrvllvsillfsvftlasalatnvtqLlvlRflaglGlGgllpnliaLvsEyapkrfratvvglvavGyaiGaavggllaallipafgWrslflvggiiplllll...llikvLpEsikflvekkpekvrkilnaiapslqaeaqselaeekseekkkrsvvkllfkgklakatllLwllyflllvvvYlltsWlP.kLlveagaslskaalllvllnvGgvlgslllgaladrlgpk.vlalllllaavfavlvvs.tlssptllllllvilGlfvngaqsgllalmaefYptaiRa.......tgvgwaigiGr....lgaiigpilagvll 398
                 +++g  + ++++e g ++ e G llsa  +G +l  + +g la  +g  rvll+s++  +++t++s+ a +v  L  + +l g   G l+p  +a +s + p   r+++ + +  G + G +v+   ++ l + +gWrs f + +++++  ++   ll+   p   ++  e   e  r  l++   +    ++ +l+ ++       s+ k+l       a  +++++ ++ +++vY+ltsW P +    +g+  + a ++ +l  +   + +lll     r+ +    ++ l++   f vl +  +   + l++ +  i+G+    a  +l+++ a ++p+  +a       t  g++ g+G     l + +gp+l+++ll
  MMETSP1137-20121227|6671_1 101 MAIGPLLVSIAEEMGCEPHERGALLSAYSLGYLLTQIGGGKLAESLGSDRVLLLSTVAGAICTALSGNARSVRALWWAQVLLGASQGPLFPVSMAHLSKWLPPEERSSASTALDTGITAGSLVALPCSGALASLLGWRSTFKLYAALSAAFAVawaLLAAPSPNKCAYISEA--E--RAYLAQALTQHXGTSKGKLPLKRL------SISKML----SLPAIWAIFCSHMAFNFGVYFLTSWGPtYYKDSLGVRPEDASFAFFLPPALNFATKLLLNKPLERYMRAsXHMTTLQCRRAFTVLGFGgSGLAMLLVIPAQSIFGAGGSTACWALTSAFAALHPAGXKAnymdiarTSSGVVSGLGNtfasLSSYVGPLLVAWLL 468
                 788889999************************************************************************************************************************************9877776655431114444555666666666..2..222222222211112222222222......223333....234556778888899************6666678**************9999********999999888777888888888888877734444444444556677666666666777777778887776333333356677777776222245567777777775 PP

>> TIGR00890  2A0111: oxalate/formate antiporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.3   0.5   1.7e-15   5.7e-13      22     260 ..     103     362 ..      91     366 .. 0.90
   2 ?   -3.0   0.1       1.6   5.5e+02      74      98 ..     442     466 ..     437     470 .. 0.79

  Alignments for each domain:
  == domain 1    score: 46.3 bits;  conditional E-value: 1.7e-15
   TIGR00890  22 wtllapalgrklrvkvtavaiaftlllivlalsqvvgGkladkfGpravallggillgiGfifaaladslallyltyglasvgegivYgialstavkWfp.dkrGLasgiiiggyGlGslilsplitsvielegveaafivmgivalllivllallikypek..................qkvkksi.evsekdvtvaealrtaqfwvlyvsfllaavsgllligllka.ygrslildvgalvlavsissllngggRlvl 260
                  + l++ + ++++++       +  ++++  l+q+ gGkla+  G+ +v ll+++  +i   +++ a s+ +l+ +  l ++++g ++ + +    kW p + r  as     g   Gsl++ p    +  l g + +f + +++   + v  all +  ++                  q+ ++s  ++  k  +++++l  +  w ++ s +  ++++ +l +     y  sl++    ++ a ++ + ln +++l+l
  MMETSP1137-20121227|6671_1 103 IGPLLVSIAEEMGCEPHERGALLSAYSLGYLLTQIGGGKLAESLGSDRVLLLSTVAGAICTALSGNARSVRALWWAQVLLGASQGPLFPVSMAHLSKWLPpEERSSASTALDTGITAGSLVALPCSGALASLLGWRSTFKLYAALSAAFAVAWALLAAPSPNkcayiseaeraylaqaltQHXGTSKgKLPLKRLSISKMLSLPAIWAIFCSHMAFNFGVYFLTSWGPTyYKDSLGVRPEDASFAFFLPPALNFATKLLL 362
                 56678889999999999999999***************************************************************************954899*************************************************9998866667*************999977777652688899**************************9999876541566788888889999888888888887765 PP

  == domain 2    score: -3.0 bits;  conditional E-value: 1.6
   TIGR00890  74 ggillgiGfifaaladslallylty 98 
                 +g+++g+G +fa+l+  +  l++++
  MMETSP1137-20121227|6671_1 442 SGVVSGLGNTFASLSSYVGPLLVAW 466
                 899999**99999998776666665 PP

>> TIGR00880  2_A_01_02: multidrug resistance protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       4.2   1.4e+03      53      64 ..      88      99 ..      77     113 .. 0.56
   2 !   42.9   3.8     3e-14     1e-11       1     137 [.     122     258 ..     122     262 .. 0.96
   3 !    6.4   4.8    0.0055       1.9      66     137 ..     424     495 ..     381     499 .. 0.77

  Alignments for each domain:
  == domain 1    score: -2.9 bits;  conditional E-value: 4.2
   TIGR00880 53 vliiarilqGfg 64
                +l+ +r+ q+++
  MMETSP1137-20121227|6671_1 88 LLFGSRFTQSVT 99
                444444444443 PP

  == domain 2    score: 42.9 bits;  conditional E-value: 3e-14
   TIGR00880   1 glllagyAlgqlvvsplsglltdrvGrkpvllvglfifvlsqllfalssnitvliiarilqGfgaaaalvagaaliadiikeeersvalgllsagialgpilGpllGavlaqalgwralflilallallafilllfl 137
                 g ll +y lg l++ +  g l++ +G   vll++++  ++ ++l+  ++++  l  a +l G + ++ +++  a +++  ++eers a   l +gi++g +++++  ++la+ lgwr +f + a+l+++++++ ++l
  MMETSP1137-20121227|6671_1 122 GALLSAYSLGYLLTQIGGGKLAESLGSDRVLLLSTVAGAICTALSGNARSVRALWWAQVLLGASQGPLFPVSMAHLSKWLPPEERSSASTALDTGITAGSLVALPCSGALASLLGWRSTFKLYAALSAAFAVAWALL 258
                 67999*************************************************************************************************************************99988887665 PP

  == domain 3    score: 6.4 bits;  conditional E-value: 0.0055
   TIGR00880  66 aaalvagaaliadiikeeersvalgllsagialgpilGpllGavla.qalgwralflilallallafilllfl 137
                 a   +  +a + di+ ++  +v+ gl +++++l+  +Gpll a+l  ++ +w  +f ++a ++l+a+ + + +
  MMETSP1137-20121227|6671_1 424 ALHPAGXKANYMDIA-RTSSGVVSGLGNTFASLSSYVGPLLVAWLLrAFPSWLPVFATIASVNLAAATVFASF 495
                 444444555666654.5578999***********************888899888999988888887666555 PP

>> TIGR00711  efflux_EmrB: drug resistance MFS transporter, drug:H+ antiporter-2 (14 Spanner) (DHA2) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.2   0.3   6.1e-11   2.1e-08      59     176 ..     141     257 ..     110     271 .. 0.88
   2 ?   -3.7   0.1       2.3     8e+02     137     160 ..     455     479 ..     433     494 .. 0.62

  Alignments for each domain:
  == domain 1    score: 31.2 bits;  conditional E-value: 6.1e-11
   TIGR00711  59 wlakrlgerklflvsvlaFtlssllcgvannlelliifRviQgfggglliplseslllseyppekrglalalvglavlvaPvlGPiLgGwiieayeWrwiFlinvpiGiivvvvalli 176
                  la+ lg  ++ l+s++a ++ + l+g a ++ +l  + v+ g+ +g+l p+s++ l +  ppe+r+ a + +  +++ +  +    +G +  ++ Wr  F +   + + ++ va+ +
  MMETSP1137-20121227|6671_1 141 KLAESLGSDRVLLLSTVAGAICTALSGNARSVRALWWAQVLLGASQGPLFPVSMAHLSKWLPPEERSSASTALDTGITAGSLVALPCSGALASLLGWRSTFKLYAALSA-AFAVAWAL 257
                 58999****************************************************************************999999***********99976655543.33444444 PP

  == domain 2    score: -3.7 bits;  conditional E-value: 2.3
   TIGR00711 137 vaPvlGPiLgGwiieay.eWrwiFl 160
                 ++  +GP L  w+  a+ +W  +F 
  MMETSP1137-20121227|6671_1 455 LSSYVGPLLVAWLLRAFpSWLPVFA 479
                 3456788888888766535666664 PP

>> TIGR00712  glpT: glycerol-3-phosphate transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.4   0.0   2.6e-10     9e-08      57     299 ..     113     352 ..      70     381 .. 0.81

  Alignments for each domain:
  == domain 1    score: 29.4 bits;  conditional E-value: 2.6e-10
   TIGR00712  57 eqgfskaelglvlsavsiayglskfimgsvsdrsnprvflaaglllsalvmlllgllpwatssiaimfvllflngwfqgmgwppcgrtmvhwfsksergtivsiwnvahnigggilaalvllgialfvvwkaalylpaiiaiivallvvllvrdtpqscglpsiee..yrndypddynekaekeltakeillqyvlknkllwyiaianvfvylvrygvldwspvylkevkhfaledsawayflye 299
                 e g    e g +lsa s+ y l+++  g++++           llls++   + + l   + s+  ++    l g  qg  +p     + +w+  +er +  +  ++    g  ++a+    ++a +  w++++ l a ++  +a+   ll   +p+ c   s  e  y  +   ++    + +l  k++ ++ +l+   +w i  + +   +  y +  w p+y k+  +  +ed+++a+fl  
  MMETSP1137-20121227|6671_1 113 EMGCEPHERGALLSAYSLGYLLTQIGGGKLAESLGSDRV----LLLSTVAGAICTALSGNARSVRALWWAQVLLGASQGPLFPVSMAHLSKWLPPEERSSASTALDTGITAGS-LVALPCSGALASLLGWRSTFKLYAALSAAFAVAWALLAAPSPNKCAYISEAEraYLAQALTQHXGTSKGKLPLKRLSISKMLSLPAIWAIFCSHMAFNFGVYFLTSWGPTYYKDSLGVRPEDASFAFFLPP 352
                 566777788888999999998888888888776554333....5666666666677777788999999999999**************************9999998877655.556667789999**********99999999999999*********975532212444444555555778999********************999999999**************************9965 PP

>> TIGR00898  2A0119: cation transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.2   0.5   3.3e-08   1.1e-05     130     259 ..     123     255 ..      94     283 .. 0.86

  Alignments for each domain:
  == domain 1    score: 22.2 bits;  conditional E-value: 3.3e-08
   TIGR00898 130 ltqsvvfvGvLlGslvlGqlsDrfGRkkvLllstlvtavsgvltafspnytvflvlrlLvGvgiagivvvalvLitEflpkkaRaivgilievffalGlll.lallAYlird..WRwLlllvslPlvlflvlv 259
                  + s + +G Ll  +  G+l+ ++G  +vLllst+  a+ + l+  + +   +    +L G +++   +v++     +lp + R  +++   +  + G l+ l+  + l     WR    l ++ + +f+v++
  MMETSP1137-20121227|6671_1 123 ALLSAYSLGYLLTQIGGGKLAESLGSDRVLLLSTVAGAICTALSGNARSVRALWWAQVLLGASQGPLFPVSMAHLSKWLPPEERSSASTALDTGITAGSLVaLPCSGALASLlgWRSTFKLYAALSAAFAVAW 255
                 4568999***********************************************************************************9999988865416655554443678875555555455555544 PP

>> TIGR00879  SP: MFS transporter, sugar porter (SP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.9   1.0   3.5e-08   1.2e-05     101     240 ..     121     258 ..      92     284 .. 0.84

  Alignments for each domain:
  == domain 1    score: 21.9 bits;  conditional E-value: 3.5e-08
   TIGR00879 101 wglvvsillvGgligalfagylsdrfgrkkslliiallfvigailsllaatalsvevlivgRvllGigvGiasalvPlYisEiApkalRgalvslyqlaitfGilvaaifg.sgklvanntlgwriplglqlipalllllg 240
                  g ++s++++G l + + +g+l  ++g ++ ll ++   v+gai ++l+ +a sv  l  ++vllG   G +  ++   +s+  p++ R    +   + it G lva  ++   + ++++++ +++  +l++++a+  +l+
  MMETSP1137-20121227|6671_1 121 RGALLSAYSLGYLLTQIGGGKLAESLGSDRVLLLST---VAGAICTALSGNARSVRALWWAQVLLGASQGPLFPVSMAHLSKWLPPEERSSASTALDTGITAGSLVALPCSgALASLLGWRSTFKLYAALSAAFAVAWALL 258
                 577899**************************9876...7899999999***********************************************************999444445455555555444444444444433 PP

>> TIGR00710  efflux_Bcr_CflA: drug resistance transporter, Bcr/CflA subfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   2.4   1.5e-05    0.0052      27     185 ..     106     267 ..     100     386 .. 0.70
   2 !    6.5   1.5     0.003         1     137     184 ..     452     499 ..     420     502 .] 0.74

  Alignments for each domain:
  == domain 1    score: 14.1 bits;  conditional E-value: 1.5e-05
   TIGR00710  27 alpeiakdlsvsasavqltltlyllglavgqLllGplsDsyGRkpvlLlgllvfalsslvlalsenietllvlRflqafgasaalVisqalvrDiyakeelskvysilmlllalaPllapliGgyvlvflsWhaiFav...lsligillvaliflllpeTka 185
                  l +ia++++ ++    + l++y lg  + q+  G+l+ s+G   vlLl ++++a+    +  + ++  l  + +l +        +s a +    + ee s   ++l   ++   l+a    g +   l+W+  F +   ls++  ++ al++   p+  a
  MMETSP1137-20121227|6671_1 106 LLVSIAEEMGCEPHERGALLSAYSLGYLLTQIGGGKLAESLGSDRVLLLSTVAGAICTALSGNARSVRALWWAQVLLGASQGPLFPVSMAHLSKWLPPEERSSASTALDTGITAGSLVALPCSGALASLLGWRSTFKLyaaLSAAFAVAWALLAAPSPNKCA 267
                 57899999999999999***********************************99999999999999999999999988777777778899999999999999999999999999999998888888999999998865111444555555554444444333 PP

  == domain 2    score: 6.5 bits;  conditional E-value: 0.003
   TIGR00710 137 llalaPllapliGgyvl.vflsWhaiFavlsligillvaliflllpeTk 184
                 +  l+  ++pl+ +++l  f sW  +Fa+++ + ++++ + + +  +T 
  MMETSP1137-20121227|6671_1 452 FASLSSYVGPLLVAWLLrAFPSWLPVFATIASVNLAAATVFASF-STTT 499
                 34578899******9883588*********99987665555444.4443 PP

>> TIGR01299  synapt_SV2: synaptic vesicle protein SV2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.3   3.7e-05     0.013     179     320 ..      96     237 ..      80     273 .. 0.87
   2 ?   -2.6   0.2      0.57   1.9e+02     256     309 ..     433     488 ..     413     494 .. 0.74

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 3.7e-05
   TIGR01299 179 dgvevfvvgfvlpsaekdlclsdsnkgllglivylgmmvgaflwggladklgrkqsllislsvnsvfaflssfvqgygtfllcrllsgvgiggaipivfsyfaevlarekrgehlswlcmfwmiggvyaaamawaiiphygw 320
                 + v  + +g +l s  +++     ++g l +   lg ++  +  g la+ lg  + ll+s    ++ + ls   +    + ++++l g   g   p+ ++++++ l  e r    + l      g + a   + a+    gw
  MMETSP1137-20121227|6671_1  96 QSVTRMAIGPLLVSIAEEMGCEPHERGALLSAYSLGYLLTQIGGGKLAESLGSDRVLLLSTVAGAICTALSGNARSVRALWWAQVLLGASQGPLFPVSMAHLSKWLPPEERSSASTALDTGITAGSLVALPCSGALASLLGW 237
                 5677788999999999999999999*****************9*******************************************************************99888877777777777777777777777777 PP

  == domain 2    score: -2.6 bits;  conditional E-value: 0.57
   TIGR01299 256 gtfllcrllsgv..giggaipivfsyfaevlarekrgehlswlcmfwmiggvyaaa 309
                  ++ ++r  sgv  g+g +   + sy   +l         swl +f  i  v  aa
  MMETSP1137-20121227|6671_1 433 NYMDIARTSSGVvsGLGNTFASLSSYVGPLLVAWLLRAFPSWLPVFATIASVNLAA 488
                 55567788888766889999999999999999998889999999999999997554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (502 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       109  (0.0265724); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                        12  (0.0029254); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.56u 0.16s 00:00:00.72 Elapsed: 00:00:00.66
# Mc/sec: 1003.92
//
Query:       MMETSP1137-20121227|6672_1  [L=151]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (151 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        60  (0.014627); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.16s 00:00:00.33 Elapsed: 00:00:00.28
# Mc/sec: 711.80
//
Query:       MMETSP1137-20121227|6673_1  [L=436]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (436 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.15s 00:00:00.44 Elapsed: 00:00:00.33
# Mc/sec: 1743.86
//
Query:       MMETSP1137-20121227|6674_1  [L=183]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (183 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       132  (0.0321794); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.15s 00:00:00.34 Elapsed: 00:00:00.47
# Mc/sec: 513.92
//
Query:       MMETSP1137-20121227|6675_1  [L=349]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (349 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        54  (0.0131643); expected 82.0 (0.02)
Passed bias filter:                       44  (0.0107265); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.15s 00:00:00.41 Elapsed: 00:00:00.38
# Mc/sec: 1212.22
//
Query:       MMETSP1137-20121227|6676_1  [L=561]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   2.1e-202  671.1  12.9   2.5e-202  670.8   8.9    1.0  1  TIGR00769 AAA: ADP/ATP carrier protein family


Domain annotation for each model (and alignments):
>> TIGR00769  AAA: ADP/ATP carrier protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  670.8   8.9  6.1e-206  2.5e-202       4     472 .]      82     552 ..      80     552 .. 0.98

  Alignments for each domain:
  == domain 1    score: 670.8 bits;  conditional E-value: 6.1e-206
   TIGR00769   4 selkkilPlfllffcilfnytilrdtkdtlvvtakgsgaevipflkvwvvvPsavivmliyaklsnvlskealfyaviapflvffalfavvlyPlsdllhpealadkllellpprlkgfiailrkWsfalfyvlaelWgsvvlsllfWgfanqitkideakrfyalfglganvalivsgrvvkyfsklraslsegvdawavslkalmvivvvsgliiillyrwinrnvllderlkkaa..lkekkakpklsakeslkflvsskyildlallviaygisinlvevvWksklkeqypskneysafmgefstltGvvsvllmlllgnvlrkygWlvaalvtPlvllltGvaffslilfakkaaslvavlgmtPlllavvvgaiqnvlsksvkyslfdatkemayiPldeeqkvkgkaaidvvaarlGksGGaliqqgllvifgslaastpylavilliivvvWlaaakklekef 472
                  elkk++Pl+l+ffcilfnytilrdtkd+lvvta+gs+aevipflk++v++P+a  ++l y+ l+n+l +ealfy v++pfl+ff++fa ++yPl+d++hp+a++d l + lp ++  +i +lr+W+++lfy la++Wgsvv+sl+fWgfan+it+++eak++y+lfg+ganval++sg+ v y+s+l+ sl  gvd+w v lk lm+ vv+sg +i+++yr +  +v+ ++ l + +    +kk+kp +s+ es k+l+ss+yi++la lviayg+sinlvev+Wk klkeq+p + +ysafmg+fs +tGv ++++m++    lrk+gW+vaa++tP vll tG+aff+l l ++ +++lva lg+tPl+lav+vga qn++sk++kyslfd++kema+iPld+eqk kgkaaidv++a+lGksGG+liqq+l+  +gslaastpyla il +i++vW++aa+ l k+f
  MMETSP1137-20121227|6676_1  82 DELKKLVPLGLMFFCILFNYTILRDTKDVLVVTAPGSSAEVIPFLKTYVNLPGATFFVLAYSALANRLGREALFYSVLTPFLGFFGAFAWIIYPLRDFVHPNAFCDMLAASLPLGFAAPIGVLRNWTYSLFYLLANMWGSVVVSLMFWGFANEITTVTEAKKYYPLFGMGANVALVFSGQFVRYVSQLKGSLPAGVDPWGVALKLLMTAVVASGGVIAACYRYLTVEVVSKSDLSEKSaqGAKKKKKPSMSLGESAKYLASSPYIRNLAALVIAYGMSINLVEVTWKAKLKEQFPDPSAYSAFMGQFSSVTGVTTLAMMFFGRFALRKWGWGVAAQITPAVLLATGAAFFALTLSGTALSPLVALLGTTPLMLAVLVGAAQNIVSKAAKYSLFDPCKEMAFIPLDQEQKTKGKAAIDVIGAPLGKSGGSLIQQVLIFSLGSLAASTPYLAAILTAIIAVWIFAARGLAKQF 552
                 69*******************************************************************************************************************************************************************************************************************************999887665443323556777******************************************************************************************************************************************************************************************************************************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (561 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       151  (0.0368113); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.13s 00:00:00.52 Elapsed: 00:00:00.49
# Mc/sec: 1511.14
//
Query:       MMETSP1137-20121227|6677_1  [L=2035]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     1e-262  871.4   3.8   1.6e-103  345.1   0.6    5.4  5  TIGR00958 3a01208: antigen peptide transporter 2
   2.8e-243  806.6  14.7   1.6e-102  341.8   2.1    5.3  5  TIGR02204 MsbA_rel: ABC transporter, permease/ATP-binding protein
   2.4e-218  724.1   7.2    1.8e-97  325.0   0.9    5.6  5  TIGR02203 MsbA_lipidA: lipid A export permease/ATP-binding protein MsbA
   2.1e-175  582.7   7.5    6.1e-78  260.6   0.2    5.1  5  TIGR01846 type_I_sec_HlyB: type I secretion system ATPase
   4.7e-174  578.4   7.3    2.9e-77  258.5   0.2    4.1  4  TIGR03797 NHLM_micro_ABC2: NHLM bacteriocin system ABC transporter, ATP-binding protein
   3.6e-153  509.2   6.4    1.1e-65  220.0   0.2    5.3  5  TIGR03796 NHLM_micro_ABC1: NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein
   6.6e-152  505.0   6.0    7.4e-64  214.0   0.3    5.1  5  TIGR03375 type_I_sec_LssB: type I secretion system ATPase
   3.3e-143  476.3   7.8    3.7e-67  225.3   0.4    4.9  5  TIGR02857 CydD: thiol reductant ABC exporter, CydD subunit
   4.7e-137  455.9   0.8    9.3e-62  207.2   0.2    3.2  3  TIGR01192 chvA: glucan exporter ATP-binding protein
   3.7e-129  430.1   0.0    1.2e-54  183.8   0.0    4.8  4  TIGR01193 bacteriocin_ABC: ABC-type bacteriocin transporter
   1.4e-119  397.9   1.4    5.3e-55  184.8   0.1    3.6  3  TIGR01842 type_I_sec_PrtD: type I secretion system ATPase
   1.1e-112  375.2   0.7    4.1e-47  158.8   0.6    3.4  3  TIGR02868 CydC: thiol reductant ABC exporter, CydC subunit
    1.1e-82  274.9   0.0    9.9e-38  127.7   0.0    3.3  3  TIGR00972 3a0107s01c2: phosphate ABC transporter, ATP-binding protein
    1.5e-78  262.3   0.0    1.3e-33  114.4   0.0    3.2  3  TIGR01186 proV: glycine betaine/L-proline transport ATP binding subunit
    3.3e-75  251.3   6.4    3.8e-33  111.9   0.0    5.5  5  TIGR00957 MRP_assoc_pro: multi drug resistance-associated protein (MRP)
    6.1e-74  246.9   0.1    1.3e-30  104.4   0.0    3.2  3  TIGR02314 ABC_MetN: D-methionine ABC transporter, ATP-binding protein
    3.9e-73  243.6   0.1    2.8e-30  103.4   0.0    3.4  3  TIGR03864 PQQ_ABC_ATP: ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system
    2.2e-72  241.2   0.0    3.8e-30  102.9   0.0    3.3  3  TIGR02315 ABC_phnC: phosphonate ABC transporter, ATP-binding protein
    4.8e-72  240.1   0.0    2.3e-29  100.4   0.0    3.4  3  TIGR00968 3a0106s01: sulfate ABC transporter, ATP-binding protein
    7.1e-70  232.8   0.0    1.8e-29  100.7   0.0    3.5  3  TIGR01277 thiQ: thiamine ABC transporter, ATP-binding protein
    9.2e-67  222.8   0.2    4.9e-27   92.9   0.0    3.6  3  TIGR00960 3a0501s02: type II secretory pathway family protein
    1.4e-66  222.7   1.8    1.2e-28   98.1   0.1    3.3  3  TIGR01188 drrA: daunorubicin resistance ABC transporter, ATP-binding protein
    4.8e-66  220.4   0.3    4.4e-27   92.8   0.0    3.5  3  TIGR03873 F420-0_ABC_ATP: proposed F420-0 ABC transporter, ATP-binding protein
    1.4e-65  218.8   0.1      3e-28   96.7   0.0    3.3  3  TIGR02982 heterocyst_DevA: ABC exporter ATP-binding subunit, DevA family
    2.4e-65  218.9   0.2    6.8e-30  102.3   0.0    3.2  3  TIGR03265 PhnT2: putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein
    2.6e-65  218.4   1.1    1.4e-29  101.0   0.0    3.3  3  TIGR01187 potA: polyamine ABC transporter, ATP-binding protein
      3e-65  217.7   0.0      3e-27   93.5   0.0    3.5  3  TIGR02673 FtsE: cell division ATP-binding protein FtsE
    3.1e-63  210.8   0.0    1.4e-27   94.3   0.0    3.4  3  TIGR03608 L_ocin_972_ABC: putative bacteriocin export ABC transporter, lactococcin 972 group
    7.2e-63  210.8   0.2    2.4e-29  100.5   0.0    3.2  3  TIGR02142 modC_ABC: molybdate ABC transporter, ATP-binding protein
    1.1e-60  202.7   0.0    3.5e-25   86.6   0.0    4.3  4  TIGR02211 LolD_lipo_ex: lipoprotein releasing system, ATP-binding protein
    6.3e-57  191.0   0.3    3.9e-24   83.2   0.0    3.2  3  TIGR03258 PhnT: 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT
    2.6e-56  188.5   0.0    8.1e-24   82.0   0.0    4.1  3  TIGR03005 ectoine_ehuA: ectoine/hydroxyectoine ABC transporter, ATP-binding protein EhuA
    2.6e-56  188.9   0.0    1.3e-23   81.7   0.0    3.4  3  TIGR02769 nickel_nikE: nickel import ATP-binding protein NikE
    9.6e-56  186.1   0.2    1.3e-24   84.5   0.0    3.7  3  TIGR01166 cbiO: cobalt ABC transporter, ATP-binding protein
    1.9e-55  185.7   0.2    1.3e-24   84.7   0.0    3.6  3  TIGR03410 urea_trans_UrtE: urea ABC transporter, ATP-binding protein UrtE
    3.9e-52  174.7   0.0    3.8e-23   79.9   0.0    3.5  3  TIGR02770 nickel_nikD: nickel import ATP-binding protein NikD
    1.3e-51  173.2   0.5    5.8e-23   79.5   0.0    3.5  3  TIGR01184 ntrCD: nitrate ABC transporter, ATP-binding proteins C and D
      5e-48  161.5   0.0    3.7e-20   70.2   0.0    3.4  3  TIGR01978 sufC: FeS assembly ATPase SufC
    4.5e-45  151.7   1.0    1.2e-16   58.7   0.0    4.7  4  TIGR02324 CP_lyasePhnL: phosphonate C-P lyase system protein PhnL
    1.8e-44  150.1   0.0    8.7e-19   65.3   0.0    3.3  3  TIGR00955 3a01204: pigment precursor permease
    3.1e-44  149.3   0.0    1.8e-18   64.9   0.0    3.3  3  TIGR03411 urea_trans_UrtD: urea ABC transporter, ATP-binding protein UrtD
    1.8e-42  143.5   0.0    4.1e-19   66.6   0.0    3.3  3  TIGR03415 ABC_choXWV_ATP: choline ABC transporter, ATP-binding protein
    1.4e-39  133.7   0.2    1.8e-18   64.4   0.0    3.3  3  TIGR01288 nodI: nodulation ABC transporter NodI
    1.6e-39  133.7   2.9    2.3e-17   61.3   0.1    3.5  3  TIGR03771 anch_rpt_ABC: anchored repeat-type ABC transporter, ATP-binding subunit
    1.7e-39  133.7   0.0    1.8e-16   58.3   0.0    3.7  3  TIGR03740 galliderm_ABC: lantibiotic protection ABC transporter, ATP-binding subunit
    1.7e-39  133.9   0.1    1.2e-15   55.6   0.0    3.4  3  TIGR03522 GldA_ABC_ATP: gliding motility-associated ABC transporter ATP-binding subunit GldA
    1.5e-38  130.3   0.0    3.9e-15   53.9   0.0    4.7  4  TIGR01189 ccmA: heme ABC exporter, ATP-binding protein CcmA
    2.6e-38  129.0   0.0    1.2e-14   50.6   0.0    4.7  5  TIGR01271 CFTR_protein: cystic fibrosis transmembrane conductor regulator (CFTR)
    8.4e-38  127.9   0.1    6.8e-18   62.2   0.0    3.3  3  TIGR02633 xylG: D-xylose ABC transporter, ATP-binding protein
    1.4e-30  104.2   0.0    2.2e-09   34.3   0.0    5.0  5  TIGR03719 ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family
    2.1e-30  103.6   7.6    2.1e-11   40.9   0.0    4.4  5  TIGR01194 cyc_pep_trnsptr: cyclic peptide transporter
    1.2e-29  101.1   1.3    1.3e-12   44.9   0.0    4.5  4  TIGR03269 met_CoM_red_A2: methyl coenzyme M reductase system, component A2
    1.5e-26   91.2   1.0    7.1e-12   43.2   0.1    4.1  4  TIGR02323 CP_lyasePhnK: phosphonate C-P lyase system protein PhnK
    1.3e-25   87.8   0.0      8e-12   42.2   0.0    4.1  3  TIGR00954 3a01203: peroxysomal long chain fatty acyl transporter
    9.8e-22   73.5   0.1    4.1e-10   35.0   0.0    3.2  3  TIGR01257 rim_protein: rim ABC transporter
    7.3e-21   71.4   0.3      3e-09   32.9   0.0    3.2  3  TIGR00956 3a01205: pleiotropic drug resistance family protein
    1.6e-17   60.8   1.5    0.00036   16.6   0.1    5.1  5  TIGR00630 uvra: excinuclease ABC subunit A
      1e-08   32.9   0.0      0.012   13.1   0.0    3.4  3  TIGR00455 apsK: adenylylsulfate kinase
    1.9e-06   25.5   0.2       0.34    8.4   0.0    3.8  3  TIGR02322 phosphon_PhnN: phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN
      7e-06   23.6   0.2       0.85    7.1   0.0    3.4  3  TIGR03263 guanyl_kin: guanylate kinase
    1.8e-05   21.7   0.1       0.32    7.6   0.0    3.2  3  TIGR03238 dnd_assoc_3: DNA phosphorothioation-dependent restriction protein DptF
    2.6e-05   21.2   0.5       0.63    6.8   0.0    3.2  3  TIGR02525 plasmid_TraJ: plasmid transfer ATPase TraJ
    0.00021   18.8   0.0       0.63    7.5   0.0    3.3  3  TIGR00235 udk: uridine kinase
    0.00034   17.1   0.9       0.57    6.4   0.0    3.1  3  TIGR00602 rad24: checkpoint protein rad24
     0.0016   16.1   0.0        3.8    5.1   0.0    3.3  3  TIGR00152 TIGR00152: dephospho-CoA kinase
  ------ inclusion threshold ------
      0.016   11.2   2.5        3.1    3.7   0.0    3.8  4  TIGR00929 VirB4_CagE: type IV secretion/conjugal transfer ATPase, VirB4 family


Domain annotation for each model (and alignments):
>> TIGR00958  3a01208: antigen peptide transporter 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.6   0.0   4.2e-17   2.6e-15     147     415 ..      27     307 ..       3     311 .. 0.80
   2 !  299.5   0.0   1.7e-91   1.1e-89     466     710 ..     467     718 ..     449     719 .. 0.92
   3 !  345.1   0.6  2.6e-105  1.6e-103     206     702 ..     912    1439 ..     902    1449 .. 0.87
   4 !   62.5   0.1   8.4e-20   5.2e-18     140     412 ..    1540    1828 ..    1519    1834 .. 0.81
   5 !  106.0   0.0   5.9e-33   3.6e-31     454     560 ..    1927    2035 .]    1908    2035 .] 0.93

  Alignments for each domain:
  == domain 1    score: 53.6 bits;  conditional E-value: 4.2e-17
   TIGR00958 147 d....lllrLLkllk.rdlkllllalvllvlsvlgevliPkytgrvidtllqdks...vealakaifll...tllslaSsllaglrgGsfeyamarinlriredlfksllrQdigFfdenktGeltSRlssDtstvsesls.lnvnvllrnlvkllgllifmlslSprLtlvtllalPlvllaekvfgkvyqklseevqeavakanqvaeEalsglrTVrSFaaEekEasrfkekleeilqlnkkkalayalylwttellgllilvlv.LayGgqlvlegkv 415
                 +     +  LL+++  rd+ l+++++++ + + +g  l+ ++ g  +d+l+   +    + l   + ++   ++l  a  +++ ++  +  +a+++ ++r +   +ks++rQdig+fd n+  el    ++   +v + l  +    l  nl + ++++++ l   +r  l+++ ++P+vl+   + ++  +  ++++ ea aka+ va Eal+++rTV S a E++ a ++ + l   +q +  k++++ l l +  l+++ ++++v  ++G  lv e+++
  MMETSP1137-20121227|6677_1  27 NlpivSIGTLLQFATpRDKTLMIIGFCFEMGAGVGFPLMFYFFGDAVDALGDPANttgEKLLDVMLEVMgkvGILAGAVLVAKIISTICIGVAKEHQSARYKVGYLKSIVRQDIGWFDCNNPQELSTAYGEALLLVEKGLGgESWGQLGLNLGQTITGFAISLLSEWRVGLLSFGFVPIVLFGVYMNSQAQRVATKKIGEAYAKAGGVAAEALGAVRTVASLAIEDEIAAKYDKGLIAAMQATIDKSFKEGLSLGIV-LSATPLQLAVcFMLGLFLVREDRL 307
                 3556677789998872567777889999999999999999999999999986544332344444455561115666667778888899999************************************************97255678889********************************99998888888999*****************************************99999999999877666554.444444444414567777766665 PP

  == domain 2    score: 299.5 bits;  conditional E-value: 1.7e-91
   TIGR00958 466 lsgtlapknleGkveFqdVsFsYPsrpdkpvlkdLtftlepGevvalVGPsGsGKStvaallenlYqPtgGqvllDgkplkeydhkylhrkvalVgqEPvlfsgsvreNiaYGlt.ktedeevtaaakaanahdFisel.ekgydtevgekGsqlsgGqkqriAiARALvrkPrvLiLDeAtSALDa....eveqllqesksaksrtvlliahrLstvekadkilvlkkgsvvelGthkqLmeked.vykql 710
                 ++g  +p+ ++G++e ++V F+YPs p+ ++ ++ ++++ +G   al GPsGsGKSt++ l+e++Y+P++G++ lDg++lk+++ ++l+ ++ lVgqEPvlfsg+v eNiaYG+  ++++e+v  aak+  ah+Fi+++  +gydt+vg+ G  lsgGqkqr+AiARA+++kP +L+LDeAtSALD     +v+++l + +++k+rt + iahrL t++++d i+v+++g +ve+G++++L + e+ ++++l
  MMETSP1137-20121227|6677_1 467 NPGGEKPDGVKGHIEVKEVVFAYPSAPHFNICNGYNLNIPAGAMCALCGPSGSGKSTIVGLMERFYDPQAGSLHLDGHNLKDLNVRWLRAQMSLVGQEPVLFSGTVYENIAYGVLgNATREQVEEAAKTGDAHNFITKVlADGYDTDVGQGGGKLSGGQKQRVAIARAMIKKPEILLLDEATSALDNaaekAVQTALDKIRETKKRTTITIAHRLTTIRNSDIIAVVNRGVIVEQGNWEELCAMEGgLFRKL 718
                 6899*************************************************************************************************************761566******************962677********************************************45545555555699****************************************99887677766 PP

  == domain 3    score: 345.1 bits;  conditional E-value: 2.6e-105
   TIGR00958  206 lltllslaSsllaglrgGsfeyamarinlriredlfksllrQdigFfd..enktGeltSRlssDtstvseslslnvnvllrnlvkllgllifmlslS.prLtlvtllalPlvllaekvfgkvy..............qklseevqeavakanqvaeEalsglrTVrSFaaEekEasrfkekle.eilqlnkkkalayalylwttellgllilvlv.....LayGgqlvlegkvssgnLvsFlLYqlqlgeavreLsevysellkavGasekvFeyldRkPqlels...gtlapknleGkveFqdVsFsYPsrpdkpvlkdLtftlepGevvalVGPsGsGKStvaallenlYqPtgGqvllDgkplkeydhkylhrkvalVgqEPvlfsgsvreNiaYG.ltktedeevtaaakaanahdFisel.ekgydtevgekGsqlsgGqkqriAiARALvrkPrvLiLDeAtSALDaeveqllqe....sksaksrtvlliahrLstvekadkilvlkkgsvvelGthkqLme 702 
                  +l+ l +    ++ ++g ++  a a++++++r+  f +l++Q++gFfd  en +Gelt  l++  ++v + + +++ + +r +  l+ ++++m+    + +tl+ +  +Pl+++a+ v  +                ++ +ee  + v  a+q++ E++ g++TV SF aEe+  + + +  + ++ +  kk  l+ ++   ++ +l  +  + v     L  G+  + + ++    Lv  ++ ql l   + ++ +  ++  +a  a+e++Fe l+R+ ++++s   g+  p+nl+G++   dV F+YP+r+  p+ ++ ++ + +G v al GPsGsGKSt++ l++++Y+P  G+++ Dg +++++  ++l+++++lVgqEPvlf g+v eNia G +  +++eev  aakaana +Fi+ +  +g+dt+vg  G  lsgGqkqr+AiARA vr P+v +LDeAtSALD+++e+++q+     + +++rt + iahrLst+++adki+v++kg+vve Gt+++L +
  MMETSP1137-20121227|6677_1  912 ILAALAVCQCCATVVEGVCYGKAAAHLTKNLRSVSFAKLIKQEVGFFDfeENSAGELTAFLAEKVTKVQSLIGEKIQLTIRLVCGLVLAVVLMFVFAhWAMTLIVIAGVPLTVAAAFVQLSAMgllgppdgqpggggDEAQEEDGKRVKSAGQLVGEVVKGIKTVCSFNAEEEFYKDYAKDTSaKMDKAIKKLPLTGLAVGGSQAILVFITAINVvagaxLDTGTDCIPDLQIVLYLLVPIVIVQLLLP-SLAQMASTVTDGKEAQLAAEQLFERLERTSKVDPSskiGEVPPNNLSGHIVVTDVIFAYPTRAGFPICNGYNLEIPAGYVCALCGPSGSGKSTIINLVQRFYDPSFGSITXDGYEVTKLRVQWLRSQIGLVGQEPVLFIGTVLENIAQGkIGGATREEVEEAAKAANAYEFITTVlGDGFDTQVGLGGGKLSGGQKQRVAIARAXVRXPAVXLLDEATSALDTASERVVQKaldsLMAKRKRTTITIAHRLSTIRNADKIAVVHKGQVVESGTYDKLLA 1439
                  666777777788888899****************************8654899****************************998888899999876449*************99886654444111111122222225566666667899****************************87665267788888888888877777776655555442233378999999999999999999999999886.57888888899999****************998763447899***********************************************************************************************************445566*****************9852678********************************************88888887666689999***********************************9975 PP

  == domain 4    score: 62.5 bits;  conditional E-value: 8.4e-20
   TIGR00958  140 eeqsetad.....lllrLLkll.krdlkllllalvllvlsvlgevliPkytgrvidtllqdksvealakaiflltllslaSsllagl...rgGsfeyamarinlriredlfksllrQdigFfde..nktGeltSRlssDtstvseslslnvnvllrnlvkllgllifmls.lSprLtlvtllalPlvllaekv.fgkvyqklseevqeavak....anqvaeEalsglrTVrSFaaEekEasrfkekleeilqlnkkkalayalylwttellgllilvlvLayGgqlvle 412 
                  ++++++ d     +l rL kl  k d ++l+++ +l ++   ++ +i +   +++++l + +  +  + +++  +++ +   +++++   +  ++ +  +++++++r+  +++ l+Qd+g+fd+  n +GeltS l +  ++v  +  +++  llr++  l+++l++ +  + ++L+lv l ++P++ la +v +  +  ++++   ++ ak    a+  + E++ g+rTV SF+aE++  + + ek++e+    k +al+  l     + + l+++ +v +yGg l+ e
  MMETSP1137-20121227|6677_1 1540 NGKKKR-DtsffgVLKRLNKLQaKGDSRYLIAGAFLSMIDGCINPAIGFIFVKLLTVLYEPNPDDIAKGSVIYGCVYIIIGVVAVAVitaETACLGIPGQHLTTNLRSLCMRTFLKQDMGYFDAesNSAGELTSFLEEKVTLVQAMNGEKIGTLLRTIFTLVSGLGLVFYfGYWQLSLVMLASVPIIALAMSVqMMVQLGATKQGAEKSGAKeeksAGSFIGEVVIGIRTVSSFSAEQTFFNMYCEKVDEMSGKGKVNALVGGLAAGLAKGVPLMVFGVVFYYGGTLLNE 1828
                  233333.24778899999998526688889999999999999***********99998887766666778888888877777666542226789****************************9633789************************************999872579*************99988724455667777778888872222456778******************************99999999999999999999999999999999998765 PP

  == domain 5    score: 106.0 bits;  conditional E-value: 5.9e-33
   TIGR00958  454 vFeyldRkPqlelsgt..lapknleGkveFqdVsFsYPsrpdkpvlkdLtftlepGevvalVGPsGsGKStvaallenlYqPtgGqvllDgkplkeydhkylhrkvalV 560 
                  +F+ l+R+  +++s t   +p    G ++ qdV F+YP+r d  + ++ t+ + +G+vval GPsGsGKSt++al+e++Y+P++G+v+lDg++++ ++  +l+++++lV
  MMETSP1137-20121227|6677_1 1927 LFDRLERQSAIDPSSTegARPASCAGDIQLQDVVFAYPTRLDYTICNGYTLHVPSGQVVALCGPSGSGKSTIIALVERFYDPQEGSVMLDGVDVRTLNVSWLRQQIGLV 2035
                  799999999998877622699*************************************************************************************998 PP

>> TIGR02204  MsbA_rel: ABC transporter, permease/ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.7   0.0   1.2e-07   7.6e-06     144     237 ..     179     272 ..      69     305 .. 0.80
   2 !  297.3   0.0   7.8e-91   4.9e-89     281     575 ..     423     722 ..     413     723 .. 0.96
   3 !  341.8   2.1  2.6e-104  1.6e-102      63     573 ..     912    1451 ..     903    1453 .. 0.84
   4 !   41.4   0.2   2.6e-13   1.6e-11      65     229 ..    1615    1788 ..    1601    1819 .. 0.78
   5 !  107.2   0.0     3e-33   1.9e-31     284     419 ..    1900    2035 .]    1884    2035 .] 0.95

  Alignments for each domain:
  == domain 1    score: 22.7 bits;  conditional E-value: 1.2e-07
   TIGR02204 144 llliGalamlvitsvkltslvllavPlvllPillfgrrvrklsresqdrladasayagealeaiktvqayaseeaersrfdaavekayeaarkr 237
                   +i ++a+ ++ + ++ +l    vP+vl+ + + ++  r ++++  +  a+a++ a+eal a++tv + a e++ ++++d+ + +a++a+  +
  MMETSP1137-20121227|6677_1 179 GQTITGFAISLLSEWRVGLLSFGFVPIVLFGVYMNSQAQRVATKKIGEAYAKAGGVAAEALGAVRTVASLAIEDEIAAKYDKGLIAAMQATIDK 272
                 4567788888899999*******************************************************************99999987655 PP

  == domain 2    score: 297.3 bits;  conditional E-value: 7.8e-91
   TIGR02204 281 vlyavlvagslgalsevlgelqraaGaaerliellkaksdikaPaqpkalpakvrgeiefeevkfayParpdqkaldgldltvrpGetvalvGPsGaGkstllelllrfydPqsGailldGvdlreldpeelrerlalvpqdsalfaasvleniryGrp.dasdeeveaaakaaeadefisk.lpeGydtllGergvtLsGGqkqriaiarailkdapiLLLdeatsaLdaeseqlvqqaleel..mkgrttlviahrLatvlkadrivvldkGriveqGthaeLia.kggLyarlarLq 575
                 vl + ++a+s+g l + +  l++a  a   +   l   + i++ +   + p  v+g+ie++ev fayP+ p+ +  +g +l++ +G   al GPsG+Gkst++ l+ rfydPq G++ ldG +l++l+ + lr++++lv q+++lf++ v eni+yG + +a++e+ve+aak+  a++fi+k l +Gydt +G+ g +LsGGqkqr+aiara++k+  iLLLdeatsaLd  +e++vq+al+++   k+rtt+ iahrL+t++++d i+v+++G iveqG+ +eL a +ggL+++la+ q
  MMETSP1137-20121227|6677_1 423 VLCSNFAATSMGILPQNITVLKKAQQALVPVQKTLMRIPPIDSFNPGGEKPDGVKGHIEVKEVVFAYPSAPHFNICNGYNLNIPAGAMCALCGPSGSGKSTIVGLMERFYDPQAGSLHLDGHNLKDLNVRWLRAQMSLVGQEPVLFSGTVYENIAYGVLgNATREQVEEAAKTGDAHNFITKvLADGYDTDVGQGGGKLSGGQKQRVAIARAMIKKPEILLLDEATSALDNAAEKAVQTALDKIreTKKRTTITIAHRLTTIRNSDIIAVVNRGVIVEQGNWEELCAmEGGLFRKLAEKQ 722
                 6778899************************************99999*************************************************************************************************************9758*******************87589*********************************************************98334789***********************************974799******876 PP

  == domain 3    score: 341.8 bits;  conditional E-value: 2.6e-104
   TIGR02204   63 lllvvvlvlalatalrfylvsslGervvadlrkavfahllelspaffd..knrsgevlsrltadttllksvvGaslsialrnlllliGalamlvi.tsvkltslvllavPlvllPillfgrrvrkl..........sresqd....rladasayagealeaiktvqayaseeaersrfdaavekayeaarkrikaralli..avvivlvfgavvlv....lWvGardvlagklsaGeLaqfvlyavlvagslgalsevlgelqraaGaaerliellkaksdikaPaqp.kalpakvrgeiefeevkfayParpdqkaldgldltvrpGetvalvGPsGaGkstllelllrfydPqsGailldGvdlreldpeelrerlalvpqdsalfaasvleniryGrp.dasdeeveaaakaaeadefisk.lpeGydtllGergvtLsGGqkqriaiarailkdapiLLLdeatsaLdaeseqlvqqaleelmk..grttlviahrLatvlkadrivvldkGriveqGthaeLia..kggLyarlar 573 
                  +l +++++   at++      +   ++  +lr+  fa+l++ + +ffd  +n++ge+ + l+  +t ++s++G  + + +r +  l+ a++++++ +   +t++v++ vPl ++  ++    +  l            e+q+    r+  a+  +ge+++ iktv +++ ee+  + +++ + + ++ a k++    l +  + +i++ ++a+ +v    l +G+  +   ++    L   v+  +l   sl++++  + + ++a  aae+l+e l+ +s+++  ++  +  p++++g+i + +v fayP+r+  +  +g +l++ +G + al GPsG+Gkst+++l++rfydP+ G+i  dG ++++l+ + lr+++ lv q+++lf + vleni+ G++  a++eeve+aakaa+a efi++ l +G+dt++G  g +LsGGqkqr+aiara ++   + LLdeatsaLd+ se+ vq+al++lm+  +rtt+ iahrL+t+++ad+i+v+ kG++ve+Gt+++L+a  +gg + +la+
  MMETSP1137-20121227|6677_1  912 ILAALAVCQCCATVVEGVCYGKAAAHLTKNLRSVSFAKLIKQEVGFFDfeENSAGELTAFLAEKVTKVQSLIGEKIQLTIRLVCGLVLAVVLMFVfAHWAMTLIVIAGVPLTVAAAFVQLSAMGLLgppdgqpgggGDEAQEedgkRVKSAGQLVGEVVKGIKTVCSFNAEEEFYKDYAKDTSAKMDKAIKKLPLTGLAVggSQAILVFITAINVVagaxLDTGTDCIPDLQIVLYLLVPIVIVQLLL-PSLAQMASTVTDGKEAQLAAEQLFERLERTSKVDPSSKIgEVPPNNLSGHIVVTDVIFAYPTRAGFPICNGYNLEIPAGYVCALCGPSGSGKSTIINLVQRFYDPSFGSITXDGYEVTKLRVQWLRSQIGLVGQEPVLFIGTVLENIAQGKIgGATREEVEEAAKAANAYEFITTvLGDGFDTQVGLGGGKLSGGQKQRVAIARAXVRXPAVXLLDEATSALDTASERVVQKALDSLMAkrKRTTITIAHRLSTIRNADKIAVVHKGQVVESGTYDKLLAigQGGRFYELAQ 1451
                  56677888888888888888888899999*****************85338999******************************9999988887625679***********998877654444333111111111123444322338999*****************************************998776655226677777777776611113334444444444444444444444443.5899999999***********************9877751556799*********************************************************************************************************8469******************86489************************************************************72257***********************************87334556666665 PP

  == domain 4    score: 41.4 bits;  conditional E-value: 2.6e-13
   TIGR02204   65 lvvvlvlalata.lrfylvsslGervvadlrkavfahllelspaffd..knrsgevlsrltadttllksvvGaslsialrnlllliGalamlvits.vkltslvllavPlvllPill.....fgrrvrklsresqdrladasayagealeaiktvqayaseeaersrfdaavek 229 
                   +++ v+a+a+  +    +   G+++ ++lr+      l+ + ++fd  +n++ge+ s l   +tl++++ G  +   lr +++l+ +l ++++    +l++++l++vP++ l + +     +g   + + +    +   a++++ge++  i+tv +++ e++  + + ++v++
  MMETSP1137-20121227|6677_1 1615 YIIIGVVAVAVItAETACLGIPGQHLTTNLRSLCMRTFLKQDMGYFDaeSNSAGELTSFLEEKVTLVQAMNGEKIGTLLRTIFTLVSGLGLVFYFGyWQLSLVMLASVPIIALAMSVqmmvqLGATKQGAEKSGAKEEKSAGSFIGEVVIGIRTVSSFSAEQTFFNMYCEKVDE 1788
                  33444444444313455667779***********************8335789*************************************9998652799999********9887541111134444444444445556789******************99887777777765 PP

  == domain 5    score: 107.2 bits;  conditional E-value: 3e-33
   TIGR02204  284 avlvagslgalsevlgelqraaGaaerliellkaksdikaPaqpkalpakvrgeiefeevkfayParpdqkaldgldltvrpGetvalvGPsGaGkstllelllrfydPqsGailldGvdlreldpeelrerlalv 419 
                    ++a+++g  s    + ++a  a   l++ l+ +s i+  +++ a pa+  g+i++++v fayP+r d++  +g  l+v +G++val GPsG+Gkst++ l+ rfydPq+G+++ldGvd+r l+ + lr+++ lv
  MMETSP1137-20121227|6677_1 1900 VFFMAMGIGMASSTATDASKAKEALLALFDRLERQSAIDPSSTEGARPASCAGDIQLQDVVFAYPTRLDYTICNGYTLHVPSGQVVALCGPSGSGKSTIIALVERFYDPQEGSVMLDGVDVRTLNVSWLRQQIGLV 2035
                  45789********************************************************************************************************************************998 PP

>> TIGR02203  MsbA_lipidA: lipid A export permease/ATP-binding protein MsbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   0.0     0.021       1.3     144     226 ..     183     264 ..     177     311 .. 0.76
   2 !  286.4   0.0   1.4e-87   8.8e-86     294     566 ..     442     719 ..     419     725 .. 0.92
   3 !  325.0   0.9   2.9e-99   1.8e-97      48     561 ..     900    1445 ..     859    1456 .. 0.80
   4 !   30.2   0.1   5.8e-10   3.6e-08      18     218 ..    1574    1780 ..    1564    1821 .. 0.77
   5 !   75.0   0.0   1.5e-23   9.5e-22     315     412 ..    1938    2035 .]    1892    2035 .] 0.79

  Alignments for each domain:
  == domain 1    score: 5.2 bits;  conditional E-value: 0.021
   TIGR02203 144 igllivllylsWqltlivvvllPvlallvrvvskrlrkiskeiqnsigeltkvveealqgyrvvklfggqeaeakRfdavsnr 226
                 +g +++ l  +W++ l+    +P++ + v + s+  r  +k+i ++ +++  v++eal   r v + + ++  a ++d+    
  MMETSP1137-20121227|6677_1 183 TG-FAISLLSEWRVGLLSFGFVPIVLFGVYMNSQAQRVATKKIGEAYAKAGGVAAEALGAVRTVASLAIEDEIAAKYDKGLIA 264
                 44.45556689****************99999999999*********************************999999974433 PP

  == domain 2    score: 286.4 bits;  conditional E-value: 1.4e-87
   TIGR02203 294 vsaklqkglaaaesvfallDsppekdeGtralervrGkvefrnvtfrypgd.drealdsislkveaGevvalvGrsGsGkstlvnllpRFyepdsGeillDgvdladlkLasLRrqvalvsqdvvLFddtiaenvaYgeleevdeaeveealaaaylkdlvdk.lpeGldtevGengskLsGGqRqRlaiaRallkdaPiLiLDeatsaLDneseRlvqaaLerlm..kgRttlviahRLstiekaDrivvlddGkiverGtheeLlarnG.lYasLh 566
                 v +k q+ l+  ++ +  +   +  + G  +++ v+G++e+++v f yp++ + ++ ++ +l++ aG + al G+sGsGkst+v l+ RFy+p++G++ lDg++l+dl+++ LR+q++lv+q+ vLF +t+ en+aYg l ++++++veea+++  +++++ k l +G dt+vG+ g+kLsGGq+qR+aiaRa++k   iL+LDeatsaLDn +e++vq aL+++   k+Rtt+ iahRL+ti+++D i v++ G ive+G  eeL a +G l+ +L 
  MMETSP1137-20121227|6677_1 442 VLKKAQQALVPVQKTLMRIPPIDSFNPGGEKPDGVKGHIEVKEVVFAYPSApHFNICNGYNLNIPAGAMCALCGPSGSGKSTIVGLMERFYDPQAGSLHLDGHNLKDLNVRWLRAQMSLVGQEPVLFSGTVYENIAYGVLGNATREQVEEAAKTGDAHNFITKvLADGYDTDVGQGGGKLSGGQKQRVAIARAMIKKPEILLLDEATSALDNAAEKAVQTALDKIRetKKRTTITIAHRLTTIRNSDIIAVVNRGVIVEQGNWEELCAMEGgLFRKLA 719
                 557789999999999999999999999**********************9835688999******************************************************************************************************87479*********************************************************9963368************************************998752666665 PP

  == domain 3    score: 325.0 bits;  conditional E-value: 2.9e-99
   TIGR02203   48 lekeevllavPllvvglvvlrGiasfvsdyllakvsnkvvrdlRkklfeklltlpsayfd..kessgsllsrltfdseqvvsaatdvlkvlvretl.tvigllivllylsWqltlivvvllPvlall..vrvvskrl............rkiskeiqnsigeltkvveealqgyrvvklfggqeaeakRfdavsnrlrrlalkvasasslssplvqliasv.alavvllialvqaqagaltvGelvafitamlalik.plksLtnvsakl...qkglaaaesvfallDsppekde....GtralervrGkvefrnvtfrypgd.drealdsislkveaGevvalvGrsGsGkstlvnllpRFyepdsGeillDgvdladlkLasLRrqvalvsqdvvLFddtiaenvaYgeleevdeaeveealaaaylkdlvdk.lpeGldtevGengskLsGGqRqRlaiaRallkdaPiLiLDeatsaLDneseRlvqaaLerlm..kgRttlviahRLstiekaDrivvlddGkiverGtheeLla..rnGl 561 
                  + + +  +   l++  l+v +  a+ v   + +k++ ++ ++lR   f+kl++    +fd  ++s+g+l   l  ++++v s + + ++  +r     v++++ ++++  W++tliv++ +P+ + +  v+  +  l             + ++e  + +  + + v e ++g + v +f+++e   k +++ ++  +++a+k    ++l    +q i    +   v++ a  ++ ++ +   ++v ++   + +++  l sL+++++++   ++  +aae++f+ l++++ +d     G++ +++  G++ + +v f yp + + ++ ++ +l++ aG v al G+sGsGkst++nl+ RFy+p+ G+i  Dg ++ +l+++ LR+q+ lv+q+ vLF +t+ en+a g+   ++++eveea++aa++ +++ + l +G+dt+vG  g+kLsGGq+qR+aiaRa ++   + +LDeatsaLD+ seR vq+aL+ lm  ++Rtt+ iahRLsti++aD+i v+ +G++ve+Gt+ +Lla  + G 
  MMETSP1137-20121227|6677_1  900 WVTYDEGIKWALILAALAVCQCCATVVEGVCYGKAAAHLTKNLRSVSFAKLIKQEVGFFDfeENSAGELTAFLAEKVTKVQSLIGEKIQLTIRLVCgLVLAVVLMFVFAHWAMTLIVIAGVPLTVAAafVQLSAMGLlgppdgqpggggDEAQEEDGKRVKSAGQLVGEVVKGIKTVCSFNAEEEFYKDYAKDTSAKMDKAIKKLPLTGLAVGGSQAILVFiTAINVVAGAXLDTGTDCIPDLQIVLYLLVPIVIVQlLLPSLAQMASTVtdgKEAQLAAEQLFERLERTSKVDPsskiGEVPPNNLSGHIVVTDVIFAYPTRaGFPICNGYNLEIPAGYVCALCGPSGSGKSTIINLVQRFYDPSFGSITXDGYEVTKLRVQWLRSQIGLVGQEPVLFIGTVLENIAQGKIGGATREEVEEAAKAANAYEFITTvLGDGFDTQVGLGGGKLSGGQKQRVAIARAXVRXPAVXLLDEATSALDTASERVVQKALDSLMakRKRTTITIAHRLSTIRNADKIAVVHKGQVVESGTYDKLLAigQGGR 1445
                  5444444555688999************************************999988653378899999999999**************9*98772466666777799***********99875541144444444222222221111233444445555667788999***********************99999999999888888877777654330222344455555555555555555554443333331455666666666111566899*********99888743334889999****************863799**********************************************************************************************************86379***********************************************************944468***********************************98334454 PP

  == domain 4    score: 30.2 bits;  conditional E-value: 5.8e-10
   TIGR02203   18 lalvalvlvaatesllaallkplldegfselekeevllavPllvvglvvlrGiasfvsdyllakvsnkvvrdlRkklfeklltlpsayfdke..ssgsllsrltfdseqvvsaatdvlkvlvretltvigllivllyl.sWqltlivvvllPvlallvrv.vskrlrkiskeiqnsige....ltkvveealqgyrvvklfggqeaeak 218 
                  l+++  +++ a   ++++ll  l +    + +k +v++    +++g+v++  i+    + +l+   +++ ++lR   +  +l+    yfd e  s+g+l s l  +++ v  +  + + +l+r  +t+++ l +++y+  Wql+l++++ +P++al+++v +  +l   ++   +s ++    + + + e + g r v +f ++++  +
  MMETSP1137-20121227|6677_1 1574 LSMIDGCINPAIGFIFVKLLTVLYEPNPDDIAKGSVIYGCVYIIIGVVAVAVITA--ETACLGIPGQHLTTNLRSLCMRTFLKQDMGYFDAEsnSAGELTSFLEEKVTLVQAMNGEKIGTLLRTIFTLVSGLGLVFYFgYWQLSLVMLASVPIIALAMSVqMMVQLGATKQGAEKSGAKeeksAGSFIGEVVIGIRTVSSFSAEQTFFN 1780
                  5566666667777777888888888888888888999999999999999998885..67799***************************96521678999999999999999999************9998888888736***************999862344555555444444443000144456777788888888888766555 PP

  == domain 5    score: 75.0 bits;  conditional E-value: 1.5e-23
   TIGR02203  315 ppekdeGtralervrGkvefrnvtfrypgd.drealdsislkveaGevvalvGrsGsGkstlvnllpRFyepdsGeillDgvdladlkLasLRrqvalv 412 
                  +p   eG r      G++++++v f yp + d  + ++  l+v +G+vval G+sGsGkst+++l+ RFy+p++G+++lDgvd++ l+++ LR+q+ lv
  MMETSP1137-20121227|6677_1 1938 DPSSTEGARP-ASCAGDIQLQDVVFAYPTRlDYTICNGYTLHVPSGQVVALCGPSGSGKSTIIALVERFYDPQEGSVMLDGVDVRTLNVSWLRQQIGLV 2035
                  3444455554.3478*************9857788899**********************************************************998 PP

>> TIGR01846  type_I_sec_HlyB: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.0      0.25        15     304     358 ..     222     273 ..     195     307 .. 0.74
   2 !  239.8   0.0   1.9e-73   1.2e-71     451     693 ..     475     723 ..     445     724 .. 0.93
   3 !  260.6   0.2   9.8e-80   6.1e-78     182     693 ..     910    1454 ..     907    1455 .. 0.81
   4 !   17.0   0.2     5e-06   0.00031     187     386 ..    1617    1825 ..    1606    1832 .. 0.77
   5 !   63.3   0.0   4.8e-20     3e-18     447     536 ..    1945    2035 .]    1919    2035 .] 0.88

  Alignments for each domain:
  == domain 1    score: 1.5 bits;  conditional E-value: 0.25
   TIGR01846 304 krvedkfeksaeaqsflvesvtgietikasavepqfkrrWerqlaayvaasfkvt 358
                 k++ +     a+a  +  e++ +++t+ + a+e+++  ++++ l a ++a+ + +
  MMETSP1137-20121227|6677_1 222 KKIGE---AYAKAGGVAAEALGAVRTVASLAIEDEIAAKYDKGLIAAMQATIDKS 273
                 33333...3456777889************************9988887776544 PP

  == domain 2    score: 239.8 bits;  conditional E-value: 1.9e-73
   TIGR01846 451 elkGaiefenirfryked.spevlsnlsldikaGeviGivGpsGsGkstltkllqrlyvPekGrvlvdgvdlaladPawlrrqvgvvlqenvlfsrsirdnialak.PaiseekviaaaklaGahdfise.lkqGyetevgekGaalsGGqrqrialaralvanPrilildeatsaldyeseavimrnlrei..ckgrtviiiahrlstvraadrilvlekGkivesGkheellak.eglyaklyqqqs 693
                  +kG+ie++++ f y      ++ +  +l+i+aG +  + GpsGsGkst+  l+ r+y P+ G + +dg++l  ++  wlr q+++v qe vlfs+++ +nia +   ++  e+v +aak   ah+fi++ l +Gy+t+vg+ G++lsGGq+qr+a+ara++++P il+ldeatsald  +e++++  l++i  +k rt i+iahrl+t+r++d i v+++G ive+G++eel a  +gl+ kl ++q 
  MMETSP1137-20121227|6677_1 475 GVKGHIEVKEVVFAYPSApHFNICNGYNLNIPAGAMCALCGPSGSGKSTIVGLMERFYDPQAGSLHLDGHNLKDLNVRWLRAQMSLVGQEPVLFSGTVYENIAYGVlGNATREQVEEAAKTGDAHNFITKvLADGYDTDVGQGGGKLSGGQKQRVAIARAMIKKPEILLLDEATSALDNAAEKAVQTALDKIreTKKRTTITIAHRLTTIRNSDIIAVVNRGVIVEQGNWEELCAMeGGLFRKLAEKQQ 723
                 579************75415689999*****************************************************************************986368999****************874799**********************************************************66789************************************9975889*99999885 PP

  == domain 3    score: 260.6 bits;  conditional E-value: 9.8e-80
   TIGR01846  182 alallavavaevalsllrtylfahltsridvelgaklyrhllalPlsyf..esrrvGdtvarvreleqirefltgsaltvvldllfvvvf.lavmffysp.kltlvvlvslviyl..l.lsvivspil...........rkrvedkfeksaeaqsflvesvtgietikasavepqfkrrWerqlaayvaasfkvtklgnlasqaieliqkltaalllwfGaklvlkGelsvGqlvafnmlag.rvsqPvl....rlaqlWqdfqqvkialerlGdildsPteass...agkaalpelkGaiefenirfrykedsp.evlsnlsldikaGeviGivGpsGsGkstltkllqrlyvPekGrvlvdgvdlaladPawlrrqvgvvlqenvlfsrsirdnialakP.aiseekviaaaklaGahdfise.lkqGyetevgekGaalsGGqrqrialaralvanPrilildeatsaldyeseavimrnlreic..kgrtviiiahrlstvraadrilvlekGkivesGkheellak..eglyaklyqqqs 693 
                  al l a+av++   +++  + +++++ ++  +l +  +  l+   +++f  e+   G+  a + e  +  + l g+ + + + l+  +v+ +  mf ++   +tl+v+  +++ +  + + + + ++l            +  e++ ++  +a  ++ e v gi+t+ +   e++f + + +  +a++ ++ k   l+ la  + + i    +a+++  Ga l    +  +   + + +l    ++q +l    ++a    d +++++a e+l + l++ +   +    g++   +l+G+i + ++ f y   +  ++ +  +l+i+aG v  + GpsGsGkst+  l+qr+y P  G +  dg +++ +  +wlr q+g+v qe vlf +++ +nia++k  ++  e+v +aak a a +fi++ l +G++t+vg  G++lsGGq+qr+a+ara v  P + +ldeatsald  se+v+++ l+++   + rt i+iahrlst+r+ad+i v++kG++vesG++++lla   +g++ +l q+q 
  MMETSP1137-20121227|6677_1  910 ALILAALAVCQCCATVVEGVCYGKAAAHLTKNLRSVSFAKLIKQEVGFFdfEENSAGELTAFLAEKVTKVQSLIGEKIQLTIRLVCGLVLaVVLMFVFAHwAMTLIVIAGVPLTVaaAfVQLSAMGLLgppdgqpggggDEAQEEDGKRVKSAGQLVGEVVKGIKTVCSFNAEEEFYKDYAKDTSAKMDKAIKKLPLTGLAVGGSQAILVFITAINVVAGAXLDTGTDCIPDLQIVLYLLVPiVIVQLLLpslaQMASTVTDGKEAQLAAEQLFERLERTSKVDPsskIGEVPPNNLSGHIVVTDVIFAYPTRAGfPICNGYNLEIPAGYVCALCGPSGSGKSTIINLVQRFYDPSFGSITXDGYEVTKLRVQWLRSQIGLVGQEPVLFIGTVLENIAQGKIgGATREEVEEAAKAANAYEFITTvLGDGFDTQVGLGGGKLSGGQKQRVAIARAXVRXPAVXLLDEATSALDTASERVVQKALDSLMakRKRTTITIAHRLSTIRNADKIAVVHKGQVVESGTYDKLLAIgqGGRFYELAQKQE 1454
                  567889******************************************73368899***999988666666677777777666666555413335555542355555555544330021333444555222222222112333444455556667888**********************************999999888888888888899999999999998888777655555555540444443331125666789****************9987755510255666679**************87765379999*******************************************************************************9626899****************863789********************************************************98633679***********************************9854489*****99996 PP

  == domain 4    score: 17.0 bits;  conditional E-value: 5e-06
   TIGR01846  187 avavaevalsllrtylfahltsridvelgaklyrhllalPlsyf..esrrvGdtvarvreleqirefltgsaltvvldllfvvvf.lavmffysp.kltlvvlvslviyll.lsvivspil..rkrvedk.f.eksaeaqsflvesvtgietikasavepqfkrrWerqlaayvaasfkvtklgnlasqaieliqkltaalllwfGakl 386 
                  ++ v+ va+ +  t  ++   +++  +l +   r +l   ++yf  es   G+  + + e  ++ + + g+ + ++l  +f++v  l+ +f++   +l lv+l s++i +l +sv +  +l   k+ ++k   +++ +a sf+ e v gi+t+ + + e+ f + + +++ +   ++     +g la+  ++ +  +++ +++++G +l
  MMETSP1137-20121227|6677_1 1617 IIGVVAVAVITAETACLGIPGQHLTTNLRSLCMRTFLKQDMGYFdaESNSAGELTSFLEEKVTLVQAMNGEKIGTLLRTIFTLVSgLGLVFYFGYwQLSLVMLASVPIIALaMSVQMMVQLgaTKQGAEKsGaKEEKSAGSFIGEVVIGIRTVSSFSAEQTFFNMYCEKVDEMSGKGKVNALVGGLAAGLAKGVPLMVFGVVFYYGGTL 1825
                  555666666666777788888889999999999***********4446789*******************************99648888887643899999999988765244444433311333333313134556789************************99999888888877777777777777777778888888888765 PP

  == domain 5    score: 63.3 bits;  conditional E-value: 4.8e-20
   TIGR01846  447 aalpelkGaiefenirfrykedsp.evlsnlsldikaGeviGivGpsGsGkstltkllqrlyvPekGrvlvdgvdlaladPawlrrqvgvv 536 
                  a  ++ +G+i+++++ f y      ++ +  +l++++G+v+ + GpsGsGkst+  l+ r+y P++G v++dgvd+  ++ +wlr+q+g+v
  MMETSP1137-20121227|6677_1 1945 ARPASCAGDIQLQDVVFAYPTRLDyTICNGYTLHVPSGQVVALCGPSGSGKSTIIALVERFYDPQEGSVMLDGVDVRTLNVSWLRQQIGLV 2035
                  4455689************877551677889*********************************************************987 PP

>> TIGR03797  NHLM_micro_ABC2: NHLM bacteriocin system ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  232.1   0.0   4.7e-71   2.9e-69     401     685 ..     433     722 ..     421     723 .. 0.89
   2 !  258.5   0.2   4.7e-79   2.9e-77     177     685 ..     908    1453 ..     893    1454 .. 0.82
   3 !   19.3   0.1   1.1e-06   6.8e-05     208     385 ..    1641    1827 ..    1543    1854 .. 0.77
   4 !   69.8   0.0   5.8e-22   3.6e-20     392     532 ..    1896    2035 .]    1882    2035 .] 0.79

  Alignments for each domain:
  == domain 1    score: 232.1 bits;  conditional E-value: 4.7e-71
   TIGR03797 401 fgsflkavtslaetlievlavvplyerakPileaepEvdeekvdpgkLsGaievdrvtFrYekd.gplvLddvslkiepGefvaivGaSGsGKStllrlLLgFekPesGsvlyDGqdlekldvqavRrqlGvVLQngrllsgsileniaggas..ltldeaweaarmagleeDika.mPmglhTvisegggtlSGGQrQRlliAralvrkPrillfDEATSALDNrtQaiVsesleklkvtR....iviAHRLSTirnadrilvleeGrvveqGsyeeLla.keGlfaelarRQ 685
                 +g++ + +t l ++  +++ v  +  r+ Pi + +p       +p+ ++G+iev++v F+Y +     + +  +l+i +G   a+ G+SGsGKSt++ l+  F  P++Gs++ DG++l++l+v+ +R q+  V Q+  l+sg+++enia g+    t +++ eaa++    + i++ +  g  T + +ggg+lSGGQ+QR+ iAra+++kP+ill+DEATSALDN + ++V  +l+k++ t+    i iAHRL Tirn+d i v++ G +veqG++eeL a ++Glf +la++Q
  MMETSP1137-20121227|6677_1 433 MGILPQNITVLKKAQQALVPVQKTLMRIPPIDSFNP----GGEKPDGVKGHIEVKEVVFAYPSApHFNICNGYNLNIPAGAMCALCGPSGSGKSTIVGLMERFYDPQAGSLHLDGHNLKDLNVRWLRAQMSLVGQEPVLFSGTVYENIAYGVLgnATREQVEEAAKTGDAHNFITKvLADGYDTDVGQGGGKLSGGQKQRVAIARAMIKKPEILLLDEATSALDNAAEKAVQTALDKIRETKkrttITIAHRLTTIRNSDIIAVVNRGVIVEQGNWEELCAmEGGLFRKLAEKQ 722
                 555566666666666666666677777777766655....45689****************655145799*******************************************************************************9997779****************99882577999******************************************************9765333449********************************995678*******99 PP

  == domain 2    score: 258.5 bits;  conditional E-value: 4.7e-79
   TIGR03797  177 qvalallaaalgallfqlaqslavlRletavdaslqaavwdrLLrlpasfF..reysagdLas.ramgvsqirrllsgatlkal...lssifallnlvlllvyslklalvavllalvaiavtlvlgllqvr........kerkllelegklsg....ltvqlingisKlrvagaeerafaawakefseqrklelkaqriedlltvlnavlpvltsavlfalaisll.....aaaklslgsflafnta.fgsflkavtslaetlie....vlavvplyerakPileaepEvdeekvdpgkLsGaievdrvtFrYe.kdgplvLddvslkiepGefvaivGaSGsGKStllrlLLgFekPesGsvlyDGqdlekldvqavRrqlGvVLQngrllsgsileniaggas..ltldeaweaarmagleeDika.mPmglhTvisegggtlSGGQrQRlliAralvrkPrillfDEATSALDNrtQaiVsesleklkvtR....iviAHRLSTirnadrilvleeGrvveqGsyeeLla..keGlfaelarRQ 685 
                  + al+l+a+a+ +   ++++++   + ++++  +l++  + +L++ ++ fF   e sag+L+   a+ v++++ l++++++ ++    + ++a++ ++++  + ++l+++a + ++va+a + ++++  +            +++e++gk       l+ ++++gi+ +    aee+++  +ak  s +   ++k+  ++ l+   ++++ v+ +a+ +++ +  l         l++  +l   +  +  +l ++ ++a+t+++     la+  l+er++   +  p  +  +v p++LsG+i v  v F+Y  + g  + +  +l+i +G   a+ G+SGsGKSt++ l+  F  P+ Gs+  DG++++kl vq +R q+G V Q+  l+ g++lenia g+    t +e+ eaa+ a   e i++ +  g+ T +  ggg+lSGGQ+QR+ iAra vr P + l+DEATSALD  + ++V ++l+ l + R    i iAHRLSTirnad+i v+++G+vve+G+y++Lla  ++G f+ela++Q
  MMETSP1137-20121227|6677_1  908 KWALILAALAVCQCCATVVEGVCYGKAAAHLTKNLRSVSFAKLIKQEVGFFdfEENSAGELTAfLAEKVTKVQSLIGEKIQLTIrlvCGLVLAVVLMFVFAHWAMTLIVIAGVPLTVAAAFVQLSAMGLLGppdgqpggGGDEAQEEDGKRVKsagqLVGEVVKGIKTVCSFNAEEEFYKDYAKDTSAKMDKAIKKLPLTGLAVGGSQAILVFITAINVVAGAX-LdtgtdCIPDLQIVLYLLVPIViVQLLLPSLAQMASTVTDgkeaQLAAEQLFERLERTSKVDPSSKIGEVPPNNLSGHIVVTDVIFAYPtRAGFPICNGYNLEIPAGYVCALCGPSGSGKSTIINLVQRFYDPSFGSITXDGYEVTKLRVQWLRSQIGLVGQEPVLFIGTVLENIAQGKIggATREEVEEAAKAANAYEFITTvLGDGFDTQVGLGGGKLSGGQKQRVAIARAXVRXPAVXLLDEATSALDTASERVVQKALDSLMAKRkrttITIAHRLSTIRNADKIAVVHKGQVVESGTYDKLLAigQGGRFYELAQKQ 1453
                  66899*********************************************733799*****8625788999999999876655400044445555444444556666666666667777777766666654111111113467888888755401113446678888888889999999999999999998888888777776666666655555443333333.334554456777777777665505556789********9833324566789*************************************6256889*********************************************************************************9998899*****************9873678*******************************************************99976444444*********************************997789********99 PP

  == domain 3    score: 19.3 bits;  conditional E-value: 1.1e-06
   TIGR03797  208 daslqaavwdrLLrlpasfFr..eysagdLasramgvsqirrllsgatlkallssifalln.lvlllvys.lklalvavllalvaiavtlvlgllqvrkerklleleg.....klsgltvqlingisKlrvagaeerafaawakefseqrklelkaqriedlltvlnavlpvltsavlfalaislla 385 
                   ++l++  +  +L+  + +F   + sag+L+s  +   ++ +++ g  + +ll +if+l++ l+l++++  ++l+lv ++ + ++++ + v  ++q+  +++  e +g     +  +++ +++ gi  +   +ae+ +f ++ ++  e +      + +  l++ l + +p+++  v+f+   +ll+
  MMETSP1137-20121227|6677_1 1641 TTNLRSLCMRTFLKQDMGYFDaeSNSAGELTSFLEEKVTLVQAMNGEKIGTLLRTIFTLVSgLGLVFYFGyWQLSLVMLASVPIIALAMSVQMMVQLGATKQGAEKSGakeekSAGSFIGEVVIGIRTVSSFSAEQTFFNMYCEKVDEMSGKGKVNALVGGLAAGLAKGVPLMVFGVVFYYGGTLLN 1827
                  455566666778888889995225789********999********************98659999999658999888777777766666666666666666555554111115667889999**********************999999888889999999999999999999999998777664 PP

  == domain 4    score: 69.8 bits;  conditional E-value: 5.8e-22
   TIGR03797  392 gsflafntafgsflkavtslaetlievlavvplyerakPileaepEvdeekvdpgkLsGaievdrvtFrYekd.gplvLddvslkiepGefvaivGaSGsGKStllrlLLgFekPesGsvlyDGqdlekldvqavRrqlGvV 532 
                   s++ f +a+g+ +++ t+   +  +  a++ l++r++   +  p  ++e ++p++  G+i+++ v F+Y +    ++ +  +l++  G+ va+ G+SGsGKSt++ l+  F  P++Gsv+ DG d+++l+v+ +R+q+G V
  MMETSP1137-20121227|6677_1 1896 PSLVVFFMAMGIGMASSTAT-DASKAKEALLALFDRLERQSAIDP-SSTEGARPASCAGDIQLQDVVFAYPTRlDYTICNGYTLHVPSGQVVALCGPSGSGKSTIIALVERFYDPQEGSVMLDGVDVRTLNVSWLRQQIGLV 2035
                  56777888877766655433.222333344555555555444444.4456789*****************87625678899***********************************************************98 PP

>> TIGR03796  NHLM_micro_ABC1: NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.0   0.1   0.00029     0.018     220     365 ..     118     266 ..      81     309 .. 0.69
   2 !  207.4   0.0   1.1e-63   6.9e-62     472     708 ..     474     718 ..     450     720 .. 0.90
   3 !  220.0   0.2   1.7e-67   1.1e-65     200     707 ..     913    1448 ..     884    1451 .. 0.73
   4 !   10.9   0.1   0.00032      0.02     134     357 ..    1542    1781 ..    1533    1818 .. 0.64
   5 !   58.4   0.0   1.4e-18   8.5e-17     470     558 ..    1946    2035 .]    1913    2035 .] 0.85

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 0.00029
   TIGR03796 220 rleiklavassarflwhilrlPveffaqRaageiasRvqlndkva.ellsgq.lattvldlvlvvfyalvmllydlvlaliaialaainvlalqlvsrkrvdanrrlqqdagklagvaiaglqsietlkAsglesdffsrwa.Gyqakl 365
                   + + + +    +l+ i+r  + +f+     e+++    +  +  + l+g+   +  l+l   ++ +++ ll ++ ++l+ + +  i ++ + ++s+++  a++++ + ++k+ gva ++l ++ t+   + e+++ +++  G+ a +
  MMETSP1137-20121227|6677_1 118 VAKEHQSARYKVGYLKSIVRQDIGWFDCNNPQELSTAYGEALLLVeKGLGGEsWGQLGLNLGQTITGFAISLLSEWRVGLLSFGFVPIVLFGVYMNSQAQRVATKKIGEAYAKAGGVAAEALGAVRTVASLAIEDEIAAKYDkGLIAAM 266
                 455555666666666666666666666666666666666555433034544313455677777788888999999****************************************************************9952554443 PP

  == domain 2    score: 207.4 bits;  conditional E-value: 1.1e-63
   TIGR03796 472 ekLsGkvelrnvtfgysal.eapliedfslslkpGqrvAlvGgsGsGkstiaklvaGlyepwsGeilfDgkpreeiprevlanslalvdqdivlfegtvrdnltl.wdetipeedlvrAakDAaihdvila.rpggyeaelaegganlsGGqrqRleiARaLvknPsiLilDEatsaLDaetEkaidenlrr....RgctciivaHRLstiRdcdeiivlerGkvverGtHeella.kegaYarL 708
                   ++G++e+++v f+y    + ++ ++++l++  G+  Al G+sGsGksti  l+  +y+p +G++ +Dg+++++++ + l++ ++lv q+ vlf+gtv +n++       ++e++++Aak    h+ i++ +++gy++++ +gg  lsGGq+qR+ iARa++k+P iL+lDEatsaLD ++Eka++ +l +    +  t+i +aHRL tiR++d i v++rG +ve+G+ eel+a ++g +++L
  MMETSP1137-20121227|6677_1 474 DGVKGHIEVKEVVFAYPSApHFNICNGYNLNIPAGAMCALCGPSGSGKSTIVGLMERFYDPQAGSLHLDGHNLKDLNVRWLRAQMSLVGQEPVLFSGTVYENIAYgVLGNATREQVEEAAKTGDAHNFITKvLADGYDTDVGQGGGKLSGGQKQRVAIARAMIKKPEILLLDEATSALDNAAEKAVQTALDKiretKKRTTITIAHRLTTIRNSDIIAVVNRGVIVEQGNWEELCAmEGGLFRKL 718
                 5689************7651568999*****************************************************************************962234567899**************973589***************************************************98775432235679***********************************9455667766 PP

  == domain 3    score: 220.0 bits;  conditional E-value: 1.7e-67
   TIGR03796  200 llltallqvvltllqlallrrleiklavassarflwhilrlPveffa..qRaageiasRv.qlndkvaellsgqlattvldlvlvvfyalvmllyd.lvlaliaia.......laainvlalqlvsr...krvdanrrlqqdagk...lagvai.aglqsietlkAsglesdffsrwaGyq.akllnaeqelgvatallsvlpelltsltsalilvvgglrvleg.eltiGm.lvafqsllasflepveklvglvselqeleadlerldDvlenpvdeeleeeeekaaeseek.......ekLsGkvelrnvtfgy.saleapliedfslslkpGqrvAlvGgsGsGkstiaklvaGlyepwsGeilfDgkpreeiprevlanslalvdqdivlfegtvrdnltlwd.etipeedlvrAakDAaihdvilar.pggyeaelaegganlsGGqrqRleiARaLvknPsiLilDEatsaLDaetEkaidenl....rrRgctciivaHRLstiRdcdeiivlerGkvverGtHeella..kegaYar 707 
                  l++ a+ q + t+++ +   +  ++l+ +  +  + ++++  v ff+  + +age++  + +   kv +l+++++  t+  +  +v+ +++m+++  + ++li+ia        a++++ a+ l      +      + q++ gk    ag  + + ++ i+t+    +e++f++ +a    ak+ +a ++l ++   ++          +a+++ ++++ v+ g  l  G+  +   +++  +l p+  +  l  +l +++++++  ++    ++++ +e+ e++++ + ++       ++LsG++ +++v f+y ++   p+ ++++l++  G   Al G+sGsGksti  lv  +y+p+ G+i+ Dg + +++  + l++ + lv q+ vlf gtv +n++       ++e++++Aak A   + i++   +g+++++  gg  lsGGq+qR+ iARa v+ P++ +lDEatsaLD++ E+ ++++l     +R  t+i +aHRLstiR++d+i v+ +G+vve Gt+++lla  ++g + +
  MMETSP1137-20121227|6677_1  913 LAALAVCQCCATVVEGVCYGKAAAHLTKNLRSVSFAKLIKQEVGFFDfeENSAGELTAFLaEKVTKVQSLIGEKIQLTIRLVCGLVLAVVLMFVFAhWAMTLIVIAgvpltvaAAFVQLSAMGLLGPpdgQPGGGGDEAQEEDGKrvkSAGQLVgEVVKGIKTVCSFNAEEEFYKDYAKDTsAKMDKAIKKLPLTGLAVGGS--------QAILVFITAINVVAGaXLDTGTdCIPDLQIVLYLLVPIVIVQLLLPSLAQMASTVTDGKEAQL-AAEQLFERLERTSKVDPSSkigevppNNLSGHIVVTDVIFAYpTRAGFPICNGYNLEIPAGYVCALCGPSGSGKSTIINLVQRFYDPSFGSITXDGYEVTKLRVQWLRSQIGLVGQEPVLFIGTVLENIAQGKiGGATREEVEEAAKAANAYEFITTVlGDGFDTQVGLGGGKLSGGQKQRVAIARAXVRXPAVXLLDEATSALDTASERVVQKALdslmAKRKRTTITIAHRLSTIRNADKIAVVHKGQVVESGTYDKLLAigQGGRFYE 1448
                  44456677888888888888999999999988889999999999975327899**988751567899999999999999999999999999999962568888776211111123333333333322111222233445555554111333333134566778888888999999987543033334444444444444333........333344455555554135555425556677777777877777777777777777765554332.233333332222221111123455569***************445678*********************************************************************************987724578899**************9861569***********************************************9998765333379**************************************98556666655 PP

  == domain 4    score: 10.9 bits;  conditional E-value: 0.00032
   TIGR03796  134 kggrkpsllrallkrlkgs.egallllvlaglllvlpglvvpafskifvD..eilveeaqe.wlr.plllglllta..llqvvltllqlallrrleiklavassarflwhilrlPveffa..qRaageiasRvqlndkvaellsgqlattvldlvlvvfyalvmlly..dlvlaliaialaainvlalqlvsrkr........vdanrrlqqdagklagvaiaglqsietlkAsglesdffsr 357 
                  k++r +s++ +l++  k + +g   +l+  ++l ++ g + pa+  ifv   ++l e + +   +  +++g +  +  ++ v++ + ++a l    ++l+++  +  ++  l+  + +f+  + +age++s ++    + +++ g+ + t+l ++  ++  l ++ y   ++l+l+++a   i +la+++++  +        +++ ++ ++ ag  +g ++ g   i t+   ++e+ ff+ 
  MMETSP1137-20121227|6677_1 1542 KKKRDTSFFGVLKRLNKLQaKGDSRYLIAGAFLSMIDGCINPAIGFIFVKllTVLYEPNPDdIAKgSVIYGCVYIIigVVAVAVITAETACLGIPGQHLTTNLRSLCMRTFLKQDMGYFDaeSNSAGELTSFLEEKVTLVQAMNGEKIGTLLRTIFTLVSGLGLVFYfgYWQLSLVMLASVPIIALAMSVQMMVQlgatkqgaEKSGAKEEKSAGSFIGEVVIG---IRTVSSFSAEQTFFNM 1781
                  455556666665554443314556788888899999************9833567666554133324555554443114455555566777888889999999999*************8224689*************9999999999999888888877766655223455555555444444444333333300000000223333333444444444444...5555555667777765 PP

  == domain 5    score: 58.4 bits;  conditional E-value: 1.4e-18
   TIGR03796  470 ekekLsGkvelrnvtfgy.saleapliedfslslkpGqrvAlvGgsGsGkstiaklvaGlyepwsGeilfDgkpreeiprevlanslalv 558 
                  + +   G ++l++v f+y ++l+  + ++++l++ +Gq vAl G+sGsGksti  lv  +y+p +G++++Dg++ ++++ + l++ + lv
  MMETSP1137-20121227|6677_1 1946 RPASCAGDIQLQDVVFAYpTRLDYTICNGYTLHVPSGQVVALCGPSGSGKSTIIALVERFYDPQEGSVMLDGVDVRTLNVSWLRQQIGLV 2035
                  227889************66899******************************************************9999998888776 PP

>> TIGR03375  type_I_sec_LssB: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.7   0.0    0.0015     0.095     296     401 ..     201     307 ..     184     309 .. 0.86
   2 !  203.3   0.0   2.1e-62   1.3e-60     410     688 ..     423     707 ..     411     711 .. 0.89
   3 !  214.0   0.3   1.2e-65   7.4e-64     319     690 ..    1056    1439 ..     947    1445 .. 0.84
   4 ?    4.8   0.3     0.024       1.5     221     361 ..    1641    1791 ..    1613    1818 .. 0.69
   5 !   72.2   0.0   9.8e-23   6.1e-21     420     546 ..    1907    2035 .]    1902    2035 .] 0.90

  Alignments for each domain:
  == domain 1    score: 8.7 bits;  conditional E-value: 0.0015
   TIGR03375 296 avplvllvglllqkplsklaeeslresaqkna.llveslegletikalnaesrlqkkWeqvvaalakvslklrllsalltnlaalvqqlvsvavvvvGvyliaegel 401
                  ++ ++l+g+++  + +++a++++ e+ +k + +  e+l ++ t+  l+ e ++ +k+++ + a  ++ ++  + + l+  +   ++ l   +  ++G +l+ e++l
  MMETSP1137-20121227|6677_1 201 GFVPIVLFGVYMNSQAQRVATKKIGEAYAKAGgVAAEALGAVRTVASLAIEDEIAAKYDKGLIAAMQATIDKSFKEGLSLGIVLSATPLQLAVCFMLGLFLVREDRL 307
                 5566899********************999853889************************9999999999999999999999999999988999999****999887 PP

  == domain 2    score: 203.3 bits;  conditional E-value: 2.1e-62
   TIGR03375 410 viLsgRalaPlaqlaglltryqqaktaleslde.lmklpvereeekrllsreklkGeielknvsfkYpeeekaaL.knvslkikpGekvaiiGriGsGKstllklllglyepteGsvlldgvdirqidpadlrrnigyvpqdvtLfyGtlrdNialgap.aaedeellraaelaGvtefvkk.hpkGldlqigerGesLSgGQrqavalaRallkdppillLDEPtsalDnsseekllerLkella..dkTlvlvtHrtslLelvdriivldkGrivadGpkdev 688
                 v+ s  a ++++ l + +t +++a++al  +++ lm+ p   + +    + + +kG+ie+k+v f+Yp + + ++ +  +l+i +G   a+ G  GsGKst+  l+ ++y+p++Gs+ ldg++++ +++  lr+++++v q+++Lf+Gt+ +Nia+g   +a+ e++ +aa++  +++f+ k  ++G+d+ +g++G +LSgGQ+q va+aRa++k+p+illLDE tsalDn++e+ + ++L ++ +  ++T + ++Hr + ++  d i v+++G iv +G+ +e+
  MMETSP1137-20121227|6677_1 423 VLCSNFAATSMGILPQNITVLKKAQQALVPVQKtLMRIPPIDSFNPGGEKPDGVKGHIEVKEVVFAYPSAPHFNIcNGYNLNIPAGAMCALCGPSGSGKSTIVGLMERFYDPQAGSLHLDGHNLKDLNVRWLRAQMSLVGQEPVLFSGTVYENIAYGVLgNATREQVEEAAKTGDAHNFITKvLADGYDTDVGQGGGKLSGGQKQRVAIARAMIKKPEILLLDEATSALDNAAEKAVQTALDKIREtkKRTTITIAHRLTTIRNSDIIAVVNRGVIVEQGNWEEL 707
                 45555666677777777777777777777775437887776677777778889*****************998873668******************************************************************************986899999*************976379*********************************************************99876699******************************98775 PP

  == domain 3    score: 214.0 bits;  conditional E-value: 1.2e-65
   TIGR03375  319 lresaqknallveslegletikalnaesrlqkkWeqvvaalakvslklrllsalltnlaalvqqlvsvavvvvGvyl......iaegeltmGgLiAaviLsgRalaPlaqlaglltryqqaktalesldelmkl..pvereeekrllsreklkGeielknvsfkYpeeek.aaLknvslkikpGekvaiiGriGsGKstllklllglyepteGsvlldgvdirqidpadlrrnigyvpqdvtLfyGtlrdNialgap.aaedeellraaelaGvtefvkk.hpkGldlqigerGesLSgGQrqavalaRallkdppillLDEPtsalDnsseekllerLkella..dkTlvlvtHrtslLelvdriivldkGrivadGpkdevle 690 
                   +  ++   l+ e ++g++t+   nae+++ k + + ++a  + ++k   l+ l++  ++++  +++ + vv+G+ l      i + ++ +  L+ +vi+    l +laq+a+ +t  ++a+ a e+l e +++  +v+ +++   +  ++l+G+i + +v f+Yp +   +  +  +l+i +G   a+ G  GsGKst+ +l+ ++y+p+ Gs++ dg +++++ ++ lr++ig+v q+++Lf Gt+ +Nia g+   a+ ee+ +aa++a + ef+ +   +G+d+q+g +G +LSgGQ+q va+aRa ++ p++ lLDE tsalD++se+ + ++L +l+a  ++T + ++Hr s ++ +d+i v+ kG++v  G+ d++l+
  MMETSP1137-20121227|6677_1 1056 GKRVKSAGQLVGEVVKGIKTVCSFNAEEEFYKDYAKDTSAKMDKAIKKLPLTGLAVGGSQAILVFITAINVVAGAXLdtgtdcIPDLQIVLYLLVPIVIVQ-LLLPSLAQMASTVTDGKEAQLAAEQLFERLERtsKVDPSSKIGEVPPNNLSGHIVVTDVIFAYPTRAGfPICNGYNLEIPAGYVCALCGPSGSGKSTIINLVQRFYDPSFGSITXDGYEVTKLRVQWLRSQIGLVGQEPVLFIGTVLENIAQGKIgGATREEVEEAAKAANAYEFITTvLGDGFDTQVGLGGGKLSGGQKQRVAIARAXVRXPAVXLLDEATSALDTASERVVQKALDSLMAkrKRTTITIAHRLSTIRNADKIAVVHKGQVVESGTYDKLLA 1439
                  33333344466799************************9999999***************************99875333333799999999999998875.68999*******************997777661145666666779999***************987652677889******************************************************************************986899****************986369***********************************************************997899*******************************999886 PP

  == domain 4    score: 4.8 bits;  conditional E-value: 0.024
   TIGR03375  221 dlilsaklfervlglrl...earpasvGsfasqlrefesvrdfltsatltalvDLpfvllf.llvialiggp.lvlvplvavplvllvglllqkpls..kla..ees..lresaqknallveslegletikalnaesrlqkkWeqvvaalak 361 
                   ++l +  ++  l+ ++   +a+++s G ++s l e  ++ + +  + + +l    f+l+  l ++++ g + l lv+l+ vp++ ++++ +q +++  ++   +e+  ++e ++  +++ e + g+ t+   +ae+++ + + + v +++ 
  MMETSP1137-20121227|6677_1 1641 TTNLRSLCMRTFLKQDMgyfDAESNSAGELTSFLEEKVTLVQAMNGEKIGTLLRTIFTLVSgLGLVFYFGYWqLSLVMLASVPII-ALAMSVQMMVQlgATKqgAEKsgAKEEKSAGSFIGEVVIGIRTVSSFSAEQTFFNMYCEKVDEMSG 1791
                  5555555555555555433367889999999999999999999999999999999999986588899999764777766666654.34444444333103220022200333333446899*****************99998888877765 PP

  == domain 5    score: 72.2 bits;  conditional E-value: 9.8e-23
   TIGR03375  420 laqlaglltryqqaktalesl.delmklpvereeekrllsreklkGeielknvsfkYpeeekaaL.knvslkikpGekvaiiGriGsGKstllklllglyepteGsvlldgvdirqidpadlrrnigyv 546 
                  +++ ++ +t  ++ak+al +l d+l ++ +  +++++ ++  ++ G+i+l++v f+Yp + + ++ +  +l++ +G+ va+ G  GsGKst+  l+ ++y+p+eGsv+ldgvd+r+++++ lr++ig+v
  MMETSP1137-20121227|6677_1 1907 IGMASSTATDASKAKEALLALfDRLERQSAIDPSSTEGARPASCAGDIQLQDVVFAYPTRLDYTIcNGYTLHVPSGQVVALCGPSGSGKSTIIALVERFYDPQEGSVMLDGVDVRTLNVSWLRQQIGLV 2035
                  67778888889999999887647888777778999999999*****************999988735689*********************************************************97 PP

>> TIGR02857  CydD: thiol reductant ABC exporter, CydD subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.0       1.4        90       9      64 ..      90     144 ..      85     159 .. 0.74
   2 !  186.1   0.0   4.4e-57   2.8e-55     316     527 ..     471     691 ..     437     693 .. 0.88
   3 !  225.3   0.4   5.9e-69   3.7e-67      45     528 ..     908    1422 ..     882    1423 .. 0.85
   4 ?    4.9   0.1     0.036       2.2      69     204 ..    1634    1777 ..    1566    1790 .. 0.69
   5 !   59.6   0.0   9.7e-19   6.1e-17     289     401 ..    1916    2035 .]    1907    2035 .] 0.80

  Alignments for each domain:
  == domain 1    score: -0.4 bits;  conditional E-value: 1.4
   TIGR02857   9 allgvvsallliaqAallarvvssliaagealaelltalaalalvlllRallawlk 64 
                 ++l+v++ + ++a A+l+a+++s++ + g a ++ ++   +  l  ++R+ ++w+ 
  MMETSP1137-20121227|6677_1  90 VMLEVMGKVGILAGAVLVAKIISTICI-GVAKEHQSARYKVGYLKSIVRQDIGWFD 144
                 68899999****************954.5555555555666666677778777776 PP

  == domain 2    score: 186.1 bits;  conditional E-value: 4.4e-57
   TIGR02857 316 aaass...slelenvsvayegrk..palkevsltvepgelvalvGaSGaGKstllklllgfvepteGailvngaelaeldadswrkqiawvpQkPllfegtvaenirlar.kdaseaevkealeragldelv.kalpqgleteiGergagLSgGqrqRlaLArallrdapllllDEPtahLDaeteaevlealrela..egrtvllvaHrlalaeladkiv 527
                 ++++    ++e+++v +ay+ +   ++ ++ +l++++g + al+G+SG+GKst++ l+ +f +p+ G+++++g++l++l+ + +r q++ v+Q+P+lf+gtv eni+ +   +a++++v+ea++  ++++++ k l +g++t +G++g +LSgGq+qR+a+Ara++++ ++lllDE t++LD+++e++v+ al+++   ++rt++ +aHrl ++++ d i 
  MMETSP1137-20121227|6677_1 471 EKPDGvkgHIEVKEVVFAYPSAPhfNICNGYNLNIPAGAMCALCGPSGSGKSTIVGLMERFYDPQAGSLHLDGHNLKDLNVRWLRAQMSLVGQEPVLFSGTVYENIAYGVlGNATREQVEEAAKTGDAHNFItKVLADGYDTDVGQGGGKLSGGQKQRVAIARAMIKKPEILLLDEATSALDNAAEKAVQTALDKIRetKKRTTITIAHRLTTIRNSDIIA 691
                 333335569**********98877999*******************************************************9************************8752689999*************98256899*********************************************************9866789*************999775 PP

  == domain 3    score: 225.3 bits;  conditional E-value: 5.9e-69
   TIGR02857   45 talaalalvlllRallawlkeaaaaraaaevksqlrerllekvaal..GpavlqkkksgelatlllegvdalddYfar.y.lpqlvlavivplvilaavltadwisalillltlPlipi.......FmiLiG.......saaqaaarkqlaalsrLsghfldlvrglptLklfgrakaeaaaikriseeyrerTmevLriAfL....SslvLellatlsv.AlvAVyiGlrllagkldlaegLlvLlLaPevylP.lRqlgaqyHakaegvaaaealvevldaeeqpeaekapltaaass....slelenvsvayegrk..palkevsltvepgelvalvGaSGaGKstllklllgfvepteGailvngaelaeldadswrkqiawvpQkPllfegtvaenirlar.kdaseaevkealeragldelvka.lpqgleteiGergagLSgGqrqRlaLArallrdapllllDEPtahLDaeteaevlealrela..egrtvllvaHrlalaeladkivv 528 
                   ++++la++++++ + ++++ +   +aaa+ +++lr+  ++k+ ++  G  + +++++gel+  l+e+v ++++ +   + l+ ++ + +v +v+l++v +a w+ +li++  +Pl           m L+G          ++a+++  + ++  ++ + ++v+g++t+  f+++++  +  ++ +++  ++ ++ L +  L    S ++L +++++ v A      G   +  +l+ +  Llv ++  ++ lP l q+++   + +e++ aae+l+e l+ ++ +   ++++ + +      ++ +++v +ay+ r   p+ ++ +l++++g + al+G+SG+GKst+++l+ +f +p  G+i  +g e+++l+ + +r+qi+ v+Q+P+lf gtv+eni+ ++  +a+++ev+ea+++a++ e++ + l++g++t++G +g +LSgGq+qR+a+Ara +r   + llDE t++LD ++e  v++al++l+  ++rt++ +aHrl+++++adki v
  MMETSP1137-20121227|6677_1  908 KWALILAALAVCQCCATVVEGVCYGKAAAHLTKNLRSVSFAKLIKQevGFFDFEENSAGELTAFLAEKVTKVQSLIGEkIqLTIRLVCGLVLAVVLMFV-FAHWAMTLIVIAGVPLTVAaafvqlsAMGLLGppdgqpgGGGDEAQEEDGKRVKSAGQLVGEVVKGIKTVCSFNAEEEFYKDYAKDTSAKMDKAIKKLPLTGLavggSQAILVFITAINVvAGAXLDTGTDCI-PDLQIVLYLLVPIVIVQLLLPsLAQMASTVTDGKEAQLAAEQLFERLE-RTSKVDPSSKIGEVPPNnlsgHIVVTDVIFAYPTRAgfPICNGYNLEIPAGYVCALCGPSGSGKSTIINLVQRFYDPSFGSITXDGYEVTKLRVQWLRSQIGLVGQEPVLFIGTVLENIAQGKiGGATREEVEEAAKAANAYEFITTvLGDGFDTQVGLGGGKLSGGQKQRVAIARAXVRXPAVXLLDEATSALDTASERVVQKALDSLMakRKRTTITIAHRLSTIRNADKIAV 1422
                  467899999999******************************9865338889999******************99864131334444444444444444.456777777777777754434233356888863222222345666777777777777778899***********************************99988777789********9852444456666654.58999999999999999999889*************************.555555555555555445569***********999889*********************************************************9************************9883579999*************9976389***********************************************************977889*****************976 PP

  == domain 4    score: 4.9 bits;  conditional E-value: 0.036
   TIGR02857   69 araaaevksqlrerllekvaal..GpavlqkkksgelatlllegvdalddYfarylpqlvlavivplvilaavl.tadwisalillltlPlipiFm.....iLiGsaaqaaarkqlaalsrLsghfldlvrglptLklfgraka 204 
                     + + + +lr+  +++ +++  G  +++++++gel++ l e+v  +++     + +l+ ++++ +  l  v+ +  w+  l++l ++P+i + m     + +G   q a++   ++ +  ++++ ++v g+ t+  f ++++
  MMETSP1137-20121227|6677_1 1634 GIPGQHLTTNLRSLCMRTFLKQdmGYFDAESNSAGELTSFLEEKVTLVQAMNGEKIGTLLRTIFTLVSGLGLVFyFGYWQLSLVMLASVPIIALAMsvqmmVQLGATKQGAEKSGAKEEKSAGSFIGEVVIGIRTVSSFSAEQT 1777
                  44566667777777777776643366677889999999999999999998888877777766665555454554156799************99652221033455445555555555555566666999*******9999875 PP

  == domain 5    score: 59.6 bits;  conditional E-value: 9.7e-19
   TIGR02857  289 egvaaaealvevld...aeeqpeaekapltaaass...slelenvsvayegrk..palkevsltvepgelvalvGaSGaGKstllklllgfvepteGailvngaelaeldadswrkqiawv 401 
                  ++ +a eal +++d   +++++ +++++ ++ a s    ++l++v +ay+ r    + ++  l+v++g++val+G+SG+GKst+++l+ +f +p+eG++ ++g++++ l+ + +r+qi+ v
  MMETSP1137-20121227|6677_1 1916 DASKAKEALLALFDrleRQSAIDPSSTEGARPA-ScagDIQLQDVVFAYPTRLdyTICNGYTLHVPSGQVVALCGPSGSGKSTIIALVERFYDPQEGSVMLDGVDVRTLNVSWLRQQIGLV 2035
                  555566666666663324444444444443333.2578***********9886678999***************************************************99999999875 PP

>> TIGR01192  chvA: glucan exporter ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  197.8   0.0   1.1e-60   6.8e-59     329     568 ..     474     720 ..     412     734 .. 0.90
   2 !  207.2   0.2   1.5e-63   9.3e-62     279     570 ..    1152    1453 ..    1063    1465 .. 0.89
   3 !   47.4   0.0   3.9e-15   2.4e-13     327     412 ..    1946    2033 ..    1907    2035 .] 0.80

  Alignments for each domain:
  == domain 1    score: 197.8 bits;  conditional E-value: 1.1e-60
   TIGR01192 329 knvkgavefrdisfefanssq..gvrdvsfeakagqtvaivgptgagkttlinllqrvydpksgqilidgvdiatvtreslrksiatvfqdagllnrsirenirlgr.edatdeevveaakaaaasdfiekrl.kgydtlvgergnrlsggerqrlaiarailknapilvldeatsaldvetearvkdaidalr..knrttfiiahrlstvreadlvlfldqgrliekgsfdeliqkd.grfakllr 568
                 ++vkg++e +++ f ++ +          +++ ag   a+ gp+g+gk+t++ l++r ydp++g + +dg +++ ++ + lr  ++ v q+  l+  ++ eni  g   +at e+v eaak+  a++fi k l +gydt vg+ g +lsgg++qr+aiara++k   il+ldeatsald  +e  v+ a+d +r  k+rtt+ iahrl+t+r++d++  +++g ++e+g+++el   + g f kl  
  MMETSP1137-20121227|6677_1 474 DGVKGHIEVKEVVFAYPSAPHfnICNGYNLNIPAGAMCALCGPSGSGKSTIVGLMERFYDPQAGSLHLDGHNLKDLNVRWLRAQMSLVGQEPVLFSGTVYENIAYGVlGNATREQVEEAAKTGDAHNFITKVLaDGYDTDVGQGGGKLSGGQKQRVAIARAMIKKPEILLLDEATSALDNAAEKAVQTALDKIRetKKRTTITIAHRLTTIRNSDIIAVVNRGVIVEQGNWEELCAMEgGLFRKLAE 720
                 68**************98764113445678999*************************************************************************73579999***************9976379*********************************************************85578************************************9876156777755 PP

  == domain 2    score: 207.2 bits;  conditional E-value: 1.5e-63
   TIGR01192  279 igfanlligrldqlkafvtqivearakledffdledsvkereepadarelk..nvkgavefrdisfefanssqg..vrdvsfeakagqtvaivgptgagkttlinllqrvydpksgqilidgvdiatvtreslrksiatvfqdagllnrsirenirlgre.datdeevveaakaaaasdfiekrl.kgydtlvgergnrlsggerqrlaiarailknapilvldeatsaldvetearvkdaidal..rknrttfiiahrlstvreadlvlfldqgrliekgsfdel..iqkdgrfakllras 570 
                  i + +ll+  l q+ + vt   ea+   e++f+  + + + +  ++++e++  n++g++   d+ f ++  +         +e+ ag   a+ gp+g+gk+t+inl+qr ydp+ g i+ dg +++ +  + lr  i  v q+  l+  ++ eni  g+  +at eev eaakaa a +fi   l +g+dt+vg  g +lsgg++qr+aiara ++   + +ldeatsald  +e  v++a+d+l  +++rtt+ iahrlst+r+ad +  + +g+++e g++d+l  i ++grf++l ++ 
  MMETSP1137-20121227|6677_1 1152 IVIVQLLLPSLAQMASTVTDGKEAQLAAEQLFERLERTSKVDPSSKIGEVPpnNLSGHIVVTDVIFAYPTRAGFpiCNGYNLEIPAGYVCALCGPSGSGKSTIINLVQRFYDPSFGSITXDGYEVTKLRVQWLRSQIGLVGQEPVLFIGTVLENIAQGKIgGATREEVEEAAKAANAYEFITTVLgDGFDTQVGLGGGKLSGGQKQRVAIARAXVRXPAVXLLDEATSALDTASERVVQKALDSLmaKRKRTTITIAHRLSTIRNADKIAVVHKGQVVESGTYDKLlaIGQGGRFYELAQKQ 1453
                  66789***************************9999999999999999995449**************976642214567899****************************************************************************63699*****************9987479*******************************************************98445789**********************************9445689*****98765 PP

  == domain 3    score: 47.4 bits;  conditional E-value: 3.9e-15
   TIGR01192  327 elknvkgavefrdisfefanssqg.v.rdvsfeakagqtvaivgptgagkttlinllqrvydpksgqilidgvdiatvtreslrksia 412 
                     +  g+++++d+ f ++   +  +    ++++ +gq va+ gp+g+gk+t+i l++r ydp++g +++dgvd+ t++   lr+ i 
  MMETSP1137-20121227|6677_1 1946 RPASCAGDIQLQDVVFAYPTRLDYtIcNGYTLHVPSGQVVALCGPSGSGKSTIIALVERFYDPQEGSVMLDGVDVRTLNVSWLRQQIG 2033
                  445678************98765413145788999*************************************************9986 PP

>> TIGR01193  bacteriocin_ABC: ABC-type bacteriocin transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  178.9   0.0   5.8e-55   3.6e-53     468     706 ..     474     719 ..     434     721 .. 0.90
   2 !  183.8   0.0   1.9e-56   1.2e-54     337     706 ..    1066    1450 ..     948    1452 .. 0.82
   3 !   18.5   0.1     2e-06   0.00012     174     366 ..    1585    1788 ..    1533    1833 .. 0.66
   4 !   42.0   0.0   1.5e-13   9.4e-12     469     551 ..    1949    2033 ..    1921    2035 .] 0.90

  Alignments for each domain:
  == domain 1    score: 178.9 bits;  conditional E-value: 5.8e-55
   TIGR01193 468 enlngdievndvsysyGyg..sevledislkikknekitlvGlsGsGkstlakllvkffqaesGeillngkslkdidkhelrqlinylPqePfifsGsilenlllgakenvsqeeikkaveiaeikddiek.lplGyqtelseeassisgGqkqrlalarallsdskvlildestsnldlltekki...venllklkdktiifvahrlsvakksdkiivldeGkiieqGshkellken.Gfyasli 706
                   ++g+iev++v + y  +   ++ +  +l+i +    +l G sGsGkst++ l+ +f++++ G ++l+g++lkd++   lr  ++ + qeP++fsG++ en+  g   n+++e++++a +  + ++ i k l  Gy+t++ + + ++sgGqkqr+a+ara++ + ++l+lde+ts ld   ek +   ++++ + k++t i +ahrl+  ++sd i v+++G i+eqG+++el + + G +++l 
  MMETSP1137-20121227|6677_1 474 DGVKGHIEVKEVVFAYPSAphFNICNGYNLNIPAGAMCALCGPSGSGKSTIVGLMERFYDPQAGSLHLDGHNLKDLNVRWLRAQMSLVGQEPVLFSGTVYENIAYGVLGNATREQVEEAAKTGDAHNFITKvLADGYDTDVGQGGGKLSGGQKQRVAIARAMIKKPEILLLDEATSALDNAAEKAVqtaLDKIRETKKRTTITIAHRLTTIRNSDIIAVVNRGVIVEQGNWEELCAMEgGLFRKLA 719
                 557899**********87622589*********************************************************************************************************884689************************************************9883335566666789***********************************976516788775 PP

  == domain 2    score: 183.8 bits;  conditional E-value: 1.9e-56
   TIGR01193  337 iiedlnGietiksltseeerykkidsefadylekslkya....kaeavqqalkavlklilnv..vilwvGallvirekltlGqlltfnallsyflnPleniinlqpklqaarvannrlnevylvdsefkekkkltel..enlngdievndvsysyGy..gsevledislkikknekitlvGlsGsGkstlakllvkffqaesGeillngkslkdidkhelrqlinylPqePfifsGsilenlllgakenvsqeeikkaveiaeikddiek.lplGyqtelseeassisgGqkqrlalarallsdskvlildestsnldlltek...kivenllklkdktiifvahrlsvakksdkiivldeGkiieqGshkellk..enGfyasli 706 
                  + e ++Gi+t+ s+++eee yk   +  +  ++k++k       a  + qa+ + +  i  v    l +G+  +   ++ l  l+   +++  +l  l  +    +  ++a++a ++l e +   s  + + k+ e   +nl g+i+v dv + y    g ++ +  +l+i +  + +l G sGsGkst++ l+ +f++++ G i+ +g +++++  + lr  i  + qeP++f G++len+  g   ++++ee+++a + a+  + i   l  G++t++   + ++sgGqkqr+a+ara +    v +lde+ts ld+  e+   k ++ l+  +++t i +ahrls  +++dki v+++G+++e+G++++ll+  + G +++l 
  MMETSP1137-20121227|6677_1 1066 VGEVVKGIKTVCSFNAEEEFYKDYAKDTSAKMDKAIKKLpltgLAVGGSQAILVFITAINVVagAXLDTGTDCIPDLQIVLYLLV-PIVIVQLLLPSLAQMASTVTDGKEAQLAAEQLFERLERTSKVDPSSKIGEVppNNLSGHIVVTDVIFAYPTraGFPICNGYNLEIPAGYVCALCGPSGSGKSTIINLVQRFYDPSFGSITXDGYEVTKLRVQWLRSQIGLVGQEPVLFIGTVLENIAQGKIGGATREEVEEAAKAANAYEFITTvLGDGFDTQVGLGGGKLSGGQKQRVAIARAXVRXPAVXLLDEATSALDTASERvvqKALDSLMAKRKRTTITIAHRLSTIRNADKIAVVHKGQVVESGTYDKLLAigQGGRFYELA 1450
                  45889******************99999999999988652111344556677666665544422468899999888888886555.56789999999******************************9999999886448999************7622668*******************************************************************************************************999863689**********************************************996333779999999**************************************8633677777775 PP

  == domain 3    score: 18.5 bits;  conditional E-value: 2e-06
   TIGR01193  174 agsyylqkiidvyiPnklkntlg.ii.slglilayilqqvlsyikafllivlgqrlsidiilsyikhlfelPmsffst..rrvGeivsrftdaskiidalastilslfldlsilvi..vglvlvlqniklfllslvaiPvyaviiilfkk.tf....eklnkdameanavlnssiiedlnGietiksltseeerykkidsefad 366 
                  +g  +++ +   y Pn      g +i     i++ ++   +  +++  l + gq+l++++    ++  ++  m +f +    +Ge++s + +  ++++a+    +  +l   + ++  +glv+ +   +l l++l ++P+ a+ + + +  ++    +  +k   + +    s i e + Gi t+ s+++e++ ++   ++  +
  MMETSP1137-20121227|6677_1 1585 IGFIFVKLLTVLYEPNPDDIAKGsVIyGCVYIIIGVVAVAVITAETACLGIPGQHLTTNLRSLCMRTFLKQDMGYFDAesNSAGELTSFLEEKVTLVQAMNGEKIGTLLRTIFTLVsgLGLVFYFGYWQLSLVMLASVPIIALAMSVQMMvQLgatkQGAEKSGAKEEKSAGSFIGEVVIGIRTVSSFSAEQTFFNMYCEKVDE 1788
                  3455666666667776543333202212222333333333344677889999*********9**************8622579*****************9998887776555444126777778899************987665433302211002233333444455667788999*************999876665555 PP

  == domain 4    score: 42.0 bits;  conditional E-value: 1.5e-13
   TIGR01193  469 nlngdievndvsysyG..ygsevledislkikknekitlvGlsGsGkstlakllvkffqaesGeillngkslkdidkhelrqlin 551 
                  +  gdi+++dv + y   +   + +  +l++ + ++++l G sGsGkst++ l+ +f+++++G ++l+g++++ ++ + lrq i 
  MMETSP1137-20121227|6677_1 1949 SCAGDIQLQDVVFAYPtrLDYTICNGYTLHVPSGQVVALCGPSGSGKSTIIALVERFYDPQEGSVMLDGVDVRTLNVSWLRQQIG 2033
                  5689***********722567899**********************************************************996 PP

>> TIGR01842  type_I_sec_PrtD: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  184.8   0.1   8.5e-57   5.3e-55     313     540 ..     476     707 ..     444     710 .. 0.94
   2 !  172.7   0.1     4e-53   2.5e-51     286     541 ..    1178    1438 ..    1149    1440 .. 0.88
   3 !   37.2   0.0   4.5e-12   2.8e-10     312     395 ..    1949    2033 ..    1917    2035 .] 0.86

  Alignments for each domain:
  == domain 1    score: 184.8 bits;  conditional E-value: 8.5e-57
   TIGR01842 313 pegelevenvslvppeekk.ktlkgisfalkaGealaiiGpsgsGkssLarllvGvwlpasGsvrlDgadlkqwdretlGksiGYlPqdveLfeGtvaeniaR.feenadaekvieaaklagvhelilr.lpkGYdteigegGaaLsgGqrqRiaLaRalygdPklvvLDePnanLDeeGeqalakalkelka.rkitvvvithrpsllelvdkilvlkdGalkafGereev 540
                 ++g++ev++v+++ p++ + ++ +g ++++ aG++ a+ GpsgsGks+++ l+   + p++Gs++lDg +lk  + + l  ++  + q+  Lf+Gtv enia  +  na+ e+v eaak  ++h++i + l +GYdt++g+gG +LsgGq+qR+a+aRa+  +P +++LDe  + LD++ e+a+ +al ++++ +k+t+++i+hr + ++  d i+v++ G + + G+ ee+
  MMETSP1137-20121227|6677_1 476 VKGHIEVKEVVFAYPSAPHfNICNGYNLNIPAGAMCALCGPSGSGKSTIVGLMERFYDPQAGSLHLDGHNLKDLNVRWLRAQMSLVGQEPVLFSGTVYENIAYgVLGNATREQVEEAAKTGDAHNFITKvLADGYDTDVGQGGGKLSGGQKQRVAIARAMIKKPEILLLDEATSALDNAAEKAVQTALDKIREtKKRTTITIAHRLTTIRNSDIIAVVNRGVIVEQGNWEEL 707
                 689********9999877648899******************************************************************************645667*******************98579***********************************************************963789***************************99998876 PP

  == domain 2    score: 172.7 bits;  conditional E-value: 4e-53
   TIGR01842  286 aarkaykrlkelleelpareea.lklPepegelevenvslvppeekk.ktlkgisfalkaGealaiiGpsgsGkssLarllvGvwlpasGsvrlDgadlkqwdretlGksiGYlPqdveLfeGtvaeniaR..feenadaekvieaaklagvhelilr.lpkGYdteigegGaaLsgGqrqRiaLaRalygdPklvvLDePnanLDeeGeqalakalkelk.arkitvvvithrpsllelvdkilvlkdGalkafGereevl 541 
                  aa++ ++rl++  +  p+++   ++  +  g++ v +v ++ p+ +  ++ +g ++++ aG + a+ GpsgsGks++  l+   + p+ Gs+  Dg+++++   + l  +iG + q+  Lf Gtv enia   ++  a+ e+v eaak+a+++e+i   l +G+dt++g gG +LsgGq+qR+a+aRa  + P++ +LDe  + LD++ e  + kal +l  +rk+t+++i+hr s ++ +dki+v+++G++ + G+ +++l
  MMETSP1137-20121227|6677_1 1178 AAEQLFERLERTSKVDPSSKIGeVPPNNLSGHIVVTDVIFAYPTRAGfPICNGYNLEIPAGYVCALCGPSGSGKSTIINLVQRFYDPSFGSITXDGYEVTKLRVQWLRSQIGLVGQEPVLFIGTVLENIAQgkIGG-ATREEVEEAAKAANAYEFITTvLGDGFDTQVGLGGGKLSGGQKQRVAIARAXVRXPAVXLLDEATSALDTASERVVQKALDSLMaKRKRTTITIAHRLSTIRNADKIAVVHKGQVVESGTYDKLL 1438
                  5666677777766665554432155557789******99998887654999*******************************************************************************722555.99*****************86489********************************************************998626789*******************************99987 PP

  == domain 3    score: 37.2 bits;  conditional E-value: 4.5e-12
   TIGR01842  312 epegelevenvslvppeekk.ktlkgisfalkaGealaiiGpsgsGkssLarllvGvwlpasGsvrlDgadlkqwdretlGksiG 395 
                  +  g +++++v+++ p+    ++ +g ++ + +G+++a+ GpsgsGks++  l+   + p++Gsv lDg+d++  +   l ++iG
  MMETSP1137-20121227|6677_1 1949 SCAGDIQLQDVVFAYPTRLDyTICNGYTLHVPSGQVVALCGPSGSGKSTIIALVERFYDPQEGSVMLDGVDVRTLNVSWLRQQIG 2033
                  56789999999999998876256689**************************************************999999998 PP

>> TIGR02868  CydC: thiol reductant ABC exporter, CydC subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  156.2   0.0     4e-48   2.5e-46     270     530 .]     418     681 ..     402     681 .. 0.90
   2 !  158.8   0.6   6.7e-49   4.1e-47      82     530 .]     936    1411 ..     914    1411 .. 0.75
   3 !   55.9   0.0   9.8e-18   6.1e-16     283     413 ..    1900    2034 ..    1886    2035 .] 0.74

  Alignments for each domain:
  == domain 1    score: 156.2 bits;  conditional E-value: 4e-48
   TIGR02868 270 pvalAvlvLlpLaafealaalpaAaqqltrvraaaeRieevldakvevaeasapaaeaaasekptlelrdlsvsypgaee..vlkgvsldlepGervavvGasGaGKstLlallaglldplkGevtldgvsvaslsesevrrvvsvlaqdaHlFdttvreNlrlar.pdatdeellaaLervgLadwlra.LpdGldtklgeggarlSGGerqRlalARaLladapvllLDEPtehLDaeteeelledLl..aaeegrtvvlvthrl 530
                  ++  + vL++  a   +  lp+ +  l+++++a+  ++++l   ++ +  +   +++ ++ k ++e++++ ++yp a++  + +g +l++++G+  a+ G+sG+GKst++ l+ ++ dp++G++ ldg ++++l+   +r+ +s++ q++ lF+ tv eN+  +  ++at e++++a +    ++ + + L dG+dt++g+gg  lSGG++qR+a+ARa++++ ++llLDE t  LD ++e+++ ++L     +++rt++ ++hrl
  MMETSP1137-20121227|6677_1 418 NIL--IAVLCSNFAATSMGILPQNITVLKKAQQALVPVQKTLMRIPPIDSFNPGGEKPDGV-KGHIEVKEVVFAYPSAPHfnICNGYNLNIPAGAMCALCGPSGSGKSTIVGLMERFYDPQAGSLHLDGHNLKDLNVRWLRAQMSLVGQEPVLFSGTVYENIAYGVlGNATREQVEEAAKTGDAHNFITKvLADGYDTDVGQGGGKLSGGQKQRVAIARAMIKKPEILLLDEATSALDNAAEKAVQTALDkiRETKKRTTITIAHRL 681
                 333..44566555556789999999999999999999999998887777777666766666.889**************9999*********************************************************************************96489*******************998********************************************************998556677888******86 PP

  == domain 2    score: 158.8 bits;  conditional E-value: 6.7e-49
   TIGR02868   82 lrslgelRvrvYerLaraalal..larlrrGdlLarlvaDvdalq.......dllvRvivPlvvAlvvalaavaliallsvaaalvlaaall.....valvvaplvslraa.rsaeqalarlrsela.aqlldllegaaelvvaGaleavlaqveeaereltraekraaaaealgaaltllaaGlavllallvgveavadgrlap.valAvlvLlpLaafealaa.lpaAaqql...trvraaaeRieevldakvevaeasapaaeaaasekptlelrdlsvsypgaee..vlkgvsldlepGervavvGasGaGKstLlallaglldplkGevtldgvsvaslsesevrrvvsvlaqdaHlFdttvreNlrlar.pdatdeellaaLervgLadwlra.LpdGldtklgeggarlSGGerqRlalARaLladapvllLDEPtehLDaeteeelledLl..aaeegrtvvlvthrl 530 
                      ++lR   +++L +++  +   +  + G+l a l++ v ++q       +l++R +  lv A+v++ ++   + +l v a++ l +a++     +++++ p   +      ++q++  +r + a + + ++++g ++   + a e++ +++++  ++ +  + ++  +++l+ + +++++   ++ ++++g     +    p   + +  L+p+ +++ l + l++ a ++   ++++ aae + e l+  ++v+ +s+  + + ++ + ++++ d+ ++yp+ +   + +g +l++++G   a+ G+sG+GKst+++l++++ dp+ G++t dg++v++l+ + +r  + ++ q++ lF  tv+eN+  ++ + at ee+++a +++   + +   L dG dt++g gg  lSGG++qR+a+ARa +    v lLDE t  LD + e+ + ++L    a+++rt++ ++hrl
  MMETSP1137-20121227|6677_1  936 AHLTKNLRSVSFAKLIKQEVGFfdFEENSAGELTAFLAEKVTKVQsligekiQLTIRLVCGLVLAVVLMFVFAHWAMTLIVIAGVPLTVAAAfvqlsAMGLLGPPDGQPGGgGDEAQEEDGKRVKSAgQLVGEVVKGIKTVCSFNAEEEFYKDYAKDTSAKMDKAIKKLPLTGLAVGGSQAILVFITAINVVAGAXLDTGTDCIPdLQIVLYLLVPIVIVQLLLPsLAQMASTVtdgKEAQLAAEQLFERLERTSKVDPSSKIGEVPPNNLSGHIVVTDVIFAYPTRAGfpICNGYNLEIPAGYVCALCGPSGSGKSTIINLVQRFYDPSFGSITXDGYEVTKLRVQWLRSQIGLVGQEPVLFIGTVLENIAQGKiGGATREEVEEAAKAANAYEFITTvLGDGFDTQVGLGGGKLSGGQKQRVAIARAXVRXPAVXLLDEATSALDTASERVVQKALDslMAKRKRTTITIAHRL 1411
                  556789999999999998875511456699************99933333333579**************99999999998888766555441111133444444444333133344444444444415567999****************9998887777776777777788877777777666666666666643333333330334444556666666544334444444400044555566666555555444444444443333455669***********98777***********************************************************************************95678*****************99989***********************************************99999988886557899999******86 PP

  == domain 3    score: 55.9 bits;  conditional E-value: 9.8e-18
   TIGR02868  283 afealaalpaAaqqltrvraaaeRieevldak...vevaeasapaaeaaasekptlelrdlsvsypgaee..vlkgvsldlepGervavvGasGaGKstLlallaglldplkGevtldgvsvaslsesevrrvvsv 413 
                  +f + + +  A  + t + +a e + ++ d     +  + +s + a +a+  + +++l+d+ ++yp+     + +g +l+++ G+ va+ G+sG+GKst++al+ ++ dp++G+v+ldgv+v +l+ s +r+ + +
  MMETSP1137-20121227|6677_1 1900 VFFMAMGIGMASSTATDASKAKEALLALFDRLerqSAIDPSSTEGARPAS-CAGDIQLQDVVFAYPTRLDytICNGYTLHVPSGQVVALCGPSGSGKSTIIALVERFYDPQEGSVMLDGVDVRTLNVSWLRQQIGL 2034
                  44444555555555555555555555555544110222222222222222.47789**********9876679*****************************************************9999999876 PP

>> TIGR00972  3a0107s01c2: phosphate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  127.7   0.0   1.6e-39   9.9e-38      14     230 ..     495     707 ..     479     712 .. 0.85
   2 !  114.2   0.0   2.1e-35   1.3e-33      18     231 ..    1229    1438 ..    1211    1445 .. 0.87
   3 !   29.1   0.0     2e-09   1.3e-07      18      87 ..    1973    2035 .]    1954    2035 .] 0.89

  Alignments for each domain:
  == domain 1    score: 127.7 bits;  conditional E-value: 1.6e-39
   TIGR00972  14 kealkdvnleikknkvtaliGpsGcGkstllrslnrlndlveevrieGkvllegkdiydkkldvvelrkkvGmvfqkpnpfpmsiydnvayglrlkgikdkkeldeive....esLkkaalwdevkdklkksalsLsGGqqqrlciaralavePevlLlDePtsaLDpiatekieeliqeLkkk..ytivivthnmqqaarvsdktaffleGelveegeteqi 230
                 ++  +  nl+i++ ++ al GpsG+Gkst++  + r+ d       +G+++l+g+++ d   +v  lr+++ +v q+p  f+ ++y+n+ayg+  +   ++++++e+++    ++     l d   +++ + + +LsGGq+qr++iara+  +Pe+lLlDe tsaLD  a + ++  +++++++   t + + h +  ++r sd +a++ +G +ve+g+ e++
  MMETSP1137-20121227|6677_1 495 FNICNGYNLNIPAGAMCALCGPSGSGKSTIVGLMERFYDPQ-----AGSLHLDGHNLKDL--NVRWLRAQMSLVGQEPVLFSGTVYENIAYGVLGNA--TREQVEEAAKtgdaHNFITKVLADGYDTDVGQGGGKLSGGQKQRVAIARAMIKKPEILLLDEATSALDNAAEKAVQTALDKIRETkkRTTITIAHRLT-TIRNSDIIAVVNRGVIVEQGNWEEL 707
                 55678899*******************************98.....9*********9875..999***************************87664..666666666511114566677899999999999**************************************999999988887543377788899996.7899****************98876 PP

  == domain 2    score: 114.2 bits;  conditional E-value: 2.1e-35
   TIGR00972   18 kdvnleikknkvtaliGpsGcGkstllrslnrlndlveevrieGkvllegkdiydkkldvvelrkkvGmvfqkpnpfpmsiydnvayglrlkgikdkkeldeivees....LkkaalwdevkdklkksalsLsGGqqqrlciaralavePevlLlDePtsaLDpiatekieeliqeL..kkkytivivthnmqqaarvsdktaffleGelveegeteqif 231 
                  +  nlei++  v al GpsG+Gkst++  + r+ d        G+++ +g ++++    v+ lr+++G+v q+p  f  ++++n+a g ++ g  +++e++e+++++       + l d   +++   + +LsGGq+qr++iara    P v LlDe tsaLD  + + +++ +++L  k+k t + + h ++ ++r +dk+a++++G++ve+g+ ++++
  MMETSP1137-20121227|6677_1 1229 NGYNLEIPAGYVCALCGPSGSGKSTIINLVQRFYDPS-----FGSITXDGYEVTKL--RVQWLRSQIGLVGQEPVLFIGTVLENIAQG-KIGG-ATREEVEEAAKAAnayeFITTVLGDGFDTQVGLGGGKLSGGQKQRVAIARAXVRXPAVXLLDEATSALDTASERVVQKALDSLmaKRKRTTITIAHRLS-TIRNADKIAVVHKGQVVESGTYDKLL 1438
                  6789*******************************87.....8**********876..6788************************99.4544.566677766665411125567788888888889999**********************************************9444558999999**97.6899****************999886 PP

  == domain 3    score: 29.1 bits;  conditional E-value: 2e-09
   TIGR00972   18 kdvnleikknkvtaliGpsGcGkstllrslnrlndlveevrieGkvllegkdiydkkldvvelrkkvGmv 87  
                  +  +l++++ +v+al GpsG+Gkst++  + r+ d       eG+v+l+g d+    l+v  lr+++G+v
  MMETSP1137-20121227|6677_1 1973 NGYTLHVPSGQVVALCGPSGSGKSTIIALVERFYDPQ-----EGSVMLDGVDVRT--LNVSWLRQQIGLV 2035
                  5678999****************************98.....9*********975..69999******98 PP

>> TIGR01186  proV: glycine betaine/L-proline transport ATP binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  114.4   0.0   2.2e-35   1.3e-33      10     217 ..     499     707 ..     495     760 .. 0.88
   2 !  111.4   0.0   1.8e-34   1.1e-32      10     218 ..    1229    1438 ..    1224    1444 .. 0.88
   3 !   32.5   0.0   1.7e-10     1e-08      12      74 ..    1975    2033 ..    1969    2035 .] 0.89

  Alignments for each domain:
  == domain 1    score: 114.4 bits;  conditional E-value: 2.2e-35
   TIGR01186  10 ndvdleieeGeiiviiGlsGsGkstlvrllnrliePtaGkilidGediaeisdaelrevrrkkiamviqkialfPhmtildnislgl....ellkideqerkekalealklvdleeyedry...PdelsGGmqqrvGlaralaaePdlllmdeafsaldPlirdelqdelvklqkklqktivfithdldealrlgdrivilkaGeivqvGtPdei 217
                 n  +l+i  G +  + G+sGsGkst+v l++r+ +P aG +++dG+++ +++   l    r ++++v q+  lf   t+ +ni++g+       +++e  +   a + + +v  ++y         +lsGG++qrv +ara+  +P++ll+dea sald    + +q  l k++++ ++t + i+h l  ++r +d i++++ G iv  G  +e+
  MMETSP1137-20121227|6677_1 499 NGYNLNIPAGAMCALCGPSGSGKSTIVGLMERFYDPQAGSLHLDGHNLKDLNVRWL----RAQMSLVGQEPVLFS-GTVYENIAYGVlgnaTREQVEEAAKTGDAHNFITKVLADGYDTDVgqgGGKLSGGQKQRVAIARAMIKKPEILLLDEATSALDNAAEKAVQTALDKIRETKKRTTITIAHRLT-TIRNSDIIAVVNRGVIVEQGNWEEL 707
                 56799*********************************************999999....99********99997.69*******972211234455556666788889999889998765111569*************************************************************6.79****************9999886 PP

  == domain 2    score: 111.4 bits;  conditional E-value: 1.8e-34
   TIGR01186   10 ndvdleieeGeiiviiGlsGsGkstlvrllnrliePtaGkilidGediaeisdaelrevrrkkiamviqkialfPhmtildnislgl....ellkideqerkekalealklvdleeyedry...PdelsGGmqqrvGlaralaaePdlllmdeafsaldPlirdelqdelvklqkklqktivfithdldealrlgdrivilkaGeivqvGtPdeil 218 
                  n  +lei  G +  + G+sGsGkst++ l+ r+ +P+ G i  dG +++++  + l    r +i++v q+  lf   t+l+ni+ g        +++e  +   a e +  v  +++  +      +lsGG++qrv +ara    P + l+dea sald      +q+ l  l +k ++t + i+h l  ++r +d+i+++++G++v  Gt d++l
  MMETSP1137-20121227|6677_1 1229 NGYNLEIPAGYVCALCGPSGSGKSTIINLVQRFYDPSFGSITXDGYEVTKLRVQWL----RSQIGLVGQEPVLFI-GTVLENIAQGKiggaTREEVEEAAKAANAYEFITTVLGDGFDTQVglgGGKLSGGQKQRVAIARAXVRXPAVXLLDEATSALDTASERVVQKALDSLMAKRKRTTITIAHRLS-TIRNADKIAVVHKGQVVESGTYDKLL 1438
                  56799**********************************************99999....9*********99996.69*****98741111334444444555566666666558898886222589*************************************************************6.79*********************998 PP

  == domain 3    score: 32.5 bits;  conditional E-value: 1.7e-10
   TIGR01186   12 vdleieeGeiiviiGlsGsGkstlvrllnrliePtaGkilidGediaeisdaelrevrrkkia 74  
                    l++  G+++ + G+sGsGkst++ l++r+ +P +G +++dG+d+  ++   l    r++i+
  MMETSP1137-20121227|6677_1 1975 YTLHVPSGQVVALCGPSGSGKSTIIALVERFYDPQEGSVMLDGVDVRTLNVSWL----RQQIG 2033
                  678999****************************************99998888....55555 PP

>> TIGR00957  MRP_assoc_pro: multi drug resistance-associated protein (MRP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0      0.89        55    1003    1072 ..      87     159 ..      74     167 .. 0.72
   2 !  111.9   0.0   6.1e-35   3.8e-33    1282    1517 ..     477     719 ..     458     723 .. 0.89
   3 !  107.3   1.5   1.5e-33   9.4e-32    1011    1518 ..     913    1451 ..     904    1454 .. 0.75
   4 !    8.8   0.1   0.00081      0.05    1009    1177 ..    1613    1789 ..    1601    1806 .. 0.78
   5 !   18.3   0.0   1.1e-06   6.7e-05    1272    1363 ..    1944    2033 ..    1907    2035 .] 0.78

  Alignments for each domain:
  == domain 1    score: -1.3 bits;  conditional E-value: 0.89
   TIGR00957 1003 ntklrlsvyaalgilqgiavlgysma.vsiggi..lasrvlhldllhnvlrspmsffertpsgnlvnrfskel 1072
                    ++ l v + +gil g+++++  ++ ++ig      s + ++  l++++r    +f+     +l   +   l
  MMETSP1137-20121227|6677_1   87 LLDVMLEVMGKVGILAGAVLVAKIIStICIGVAkeHQSARYKVGYLKSIVRQDIGWFDCNNPQELSTAYGEAL 159 
                  457899***********987766554144444321567788999*************9887777766666655 PP

  == domain 2    score: 111.9 bits;  conditional E-value: 6.1e-35
   TIGR00957 1282 sgrvefrnyslryredldl.vlrdlnvtieggekvgivgrtgagkssltlglfrinesaegeiiidglniakiglhdlrfkltiipqdpvlfsgslrmnld..pfsqysdeevwlalelahlkdfvs.alpdkldfecaeggenlsvgqrqlvclarallrktkilvldeataavdletdnliqstirtqfe..dctvltiahrlntimdytrvlvldkgevaefdapsellqqr.gifysma 1517
                  +g++e ++  + y     + + +  n++i  g    + g +g+gks++   + r  +   g + +dg n+ ++ +  lr +++++ q+pvlfsg++  n+    +++ + e+v  a +    ++f++  l d+ d +  +gg +ls gq+q v +ara+++k  il+ldeat+a+d  +++ +q+++    e  + t +tiahrl ti +   + v+++g++ e +   el +   g+f  +a
  MMETSP1137-20121227|6677_1  477 KGHIEVKEVVFAYPSAPHFnICNGYNLNIPAGAMCALCGPSGSGKSTIVGLMERFYDPQAGSLHLDGHNLKDLNVRWLRAQMSLVGQEPVLFSGTVYENIAygVLGNATREQVEEAAKTGDAHNFITkVLADGYDTDVGQGGGKLSGGQKQRVAIARAMIKKPEILLLDEATSALDNAAEKAVQTALDKIREtkKRTTITIAHRLTTIRNSDIIAVVNRGVIVEQGNWEELCAMEgGLFRKLA 719 
                  68888888888888777772456799**********************99999*******************************************99875227999******************9735899****************************************************998654441167999********************************986526777766 PP

  == domain 3    score: 107.3 bits;  conditional E-value: 1.5e-33
   TIGR00957 1011 yaalgilqgiavlgysmavsiggilasrvlhldllhnvlrspmsffe..rtpsgnlvnrfskeldvvdsvlaevikmllgslfnvigavivillat..plaavii..lplallyflvqrfyva..........ssrqlkrlesvsrspvy.shfnetllgvsvirafeeqerfiiqsdlkvdenqkayypsivanrwlavrlelvg.ncivlfaalfavisrsslsaglvg...lsvs.yslq....vtaylnwlvrmssel...etnivaverlke.ysetekeapwqieetappsswpksgrvefrnyslryredldl.vlrdlnvtieggekvgivgrtgagkssltlglfrinesaegeiiidglniakiglhdlrfkltiipqdpvlfsgslrmnld..pfsqysdeevwlalelahlkdfvsa.lpdkldfecaeggenlsvgqrqlvclarallrktkilvldeataavdletdnliqstirtqfe..dctvltiahrlntimdytrvlvldkgevaefdapsellq..qrgifysmak 1518
                   aal + q  a +   ++        ++ l    + + ++    ff+     +g+l   ++ ++  v+s++ e i++ +  +   + av+++++ +   ++ ++i  +pl++   +vq   +              +  + e   r         e + g+  + +f+ +e+f +      d   k    + + +  l+ +l + g + i++f + + v++   l++g      l +  y l     v   l  l +m+s +   +   +a e+l e   +t k  p    +  pp++   sg++   +  + y     + + +  n++i  g    + g +g+gks++   + r  + + g i  dg +++k+ +  lr+++ ++ q+pvlf g++  n+    ++  + eev  a + a   +f+++ l d++d +   gg +ls gq+q v +ara +r   + +ldeat+a+d  ++ ++q ++ + +   + t +tiahrl ti +  ++ v+ kg+v e ++  +ll+  q g fy +a+
  MMETSP1137-20121227|6677_1  913 LAALAVCQCCATVVEGVCYGKAAAHLTKNLRSVSFAKLIKQEVGFFDfeENSAGELTAFLAEKVTKVQSLIGEKIQLTIRLVCGLVLAVVLMFVFAhwAMTLIVIagVPLTVAAAFVQLSAMGllgppdgqpgGGGDEAQEEDGKRVKSAgQLVGEVVKGIKTVCSFNAEEEFYKD--YAKDTSAK--MDKAIKKLPLT-GLAVGGsQAILVFITAINVVAGAXLDTGTDCipdLQIVlYLLVpiviVQLLLPSLAQMASTVtdgKEAQLAAEQLFErLERTSKVDPSSKIGEVPPNNL--SGHIVVTDVIFAYPTRAGFpICNGYNLEIPAGYVCALCGPSGSGKSTIINLVQRFYDPSFGSITXDGYEVTKLRVQWLRSQIGLVGQEPVLFIGTVLENIAqgKIGGATREEVEEAAKAANAYEFITTvLGDGFDTQVGLGGGKLSGGQKQRVAIARAXVRXPAVXLLDEATSALDTASERVVQKALDSLMAkrKRTTITIAHRLSTIRNADKIAVVHKGQVVESGTYDKLLAigQGGRFYELAQ 1451
                  57788888887777777777777777788888888888899999975226788999999999999999999999999888888877777765543311233333333699999999997554311111111111222333444444433303468999999999999999999753..33343333..23333332222.333333256788888889999999998864411155441443211113344566677877653322344666776652577999999998899999976..7888888888888777776356789***********************************************************************999862268999*****************976379*******************************************************998775226799********************************98644899***9997 PP

  == domain 4    score: 8.8 bits;  conditional E-value: 0.00081
   TIGR00957 1009 svyaalgilqgiavlgysmavsiggilasrvlhldllhnvlrspmsffer..tpsgnlvnrfskeldvvdsvlaevikmllgslfnvigavivill..atplaavii..lplallyflvqrfy..vassrqlkrlesvsrspvyshfnetllgvsvirafeeqerfiiqsdlkvden 1177
                  +vy  +g++  +++ + + ++ i g   +  l    + + l+  m +f+     +g+l   +  ++  v+ +  e i  ll ++f+ ++ + +++      l  v++  +p+  l + vq +    a+ +   +  +       s + e ++g+  + +f  ++ f  +   kvde 
  MMETSP1137-20121227|6677_1 1613 CVYIIIGVVAVAVITAETACLGIPGQHLTTNLRSLCMRTFLKQDMGYFDAesNSAGELTSFLEEKVTLVQAMNGEKIGTLLRTIFTLVSGLGLVFYfgYWQLSLVMLasVPIIALAMSVQMMVqlGATKQGAEKSGAKEEKSAGSFIGEVVIGIRTVSSFSAEQTFFNMYCEKVDEM 1789
                  689999999988899999999***************************86225679999999999***********************98865543112223333321134444445555543113555555666666677789999********************9999999985 PP

  == domain 5    score: 18.3 bits;  conditional E-value: 1.1e-06
   TIGR00957 1272 etappsswpksgrvefrnyslryredldlvl.rdlnvtieggekvgivgrtgagkssltlglfrinesaegeiiidglniakiglhdlrfklt 1363
                  +++p s    +g++++++  + y   ld+ + +  ++++  g+ v + g +g+gks++   + r  +  eg +++dg+++  + +  lr ++ 
  MMETSP1137-20121227|6677_1 1944 GARPAS---CAGDIQLQDVVFAYPTRLDYTIcNGYTLHVPSGQVVALCGPSGSGKSTIIALVERFYDPQEGSVMLDGVDVRTLNVSWLRQQIG 2033
                  333333...368888889999999999986525688999999999999999999999988888999999999999999999999888888886 PP

>> TIGR02314  ABC_MetN: D-methionine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  104.4   0.0   2.1e-32   1.3e-30      17     229 ..     494     708 ..     480     724 .. 0.82
   2 !  102.4   0.0   8.4e-32   5.2e-30      22     230 ..    1229    1439 ..    1213    1452 .. 0.85
   3 !   36.1   0.0   1.2e-11   7.5e-10      20      85 ..    1971    2033 ..    1954    2035 .] 0.85

  Alignments for each domain:
  == domain 1    score: 104.4 bits;  conditional E-value: 2.1e-32
   TIGR02314  17 kikaldnvslfvpkgqifgvigasgagkstlircvnllekptsgavivdgkdlttlsnaelvkarrqigmifqhfnllssrtvfgnvalplelentpkekikrkvt..ellalv..glsdkkds....ypsnlsggqkqrvaiaralasepkvllcdeatsaldpattqsilellkeinrrlgltillithemdvvkricdevavidkgeliekgtvseif 229
                 +++  +  +l +p+g ++ + g sg+gkst++  ++ +  p  g++ +dg++l  l+       r q+ ++ q   +l s tv++n+a  + l n ++e++++  +  +   ++   l+d  d+        lsggqkqrvaiara+  +p +ll deatsald a+ +++ + l +i  + + t + i+h +  +++  d +av+++g ++e+g   e+ 
  MMETSP1137-20121227|6677_1 494 HFNICNGYNLNIPAGAMCALCGPSGSGKSTIVGLMERFYDPQAGSLHLDGHNLKDLNVR---WLRAQMSLVGQEP-VLFSGTVYENIAYGV-LGNATREQVEEAAKtgDAHNFItkVLADGYDTdvgqGGGKLSGGQKQRVAIARAMIKKPEILLLDEATSALDNAAEKAVQTALDKIRETKKRTTITIAHRLTTIRN-SDIIAVVNRGVIVEQGNWEELC 708
                 556677889******************************************99888654...5578889998986.56688*******987.7788888887643311332222112455444411114578*************************************************************99865.8***************988875 PP

  == domain 2    score: 102.4 bits;  conditional E-value: 8.4e-32
   TIGR02314   22 dnvslfvpkgqifgvigasgagkstlircvnllekptsgavivdgkdlttlsnaelvkarrqigmifqhfnllssrtvfgnvalplelentpkekikrkvt.....ellalvglsdkkdsy....psnlsggqkqrvaiaralasepkvllcdeatsaldpattqsilellkeinrrlgltillithemdvvkricdevavidkgeliekgtvseifs 230 
                  +  +l +p+g ++ + g sg+gkst+i  v+ +  p+ g++  dg ++t+l+   l   r qig++ q   l    tv++n+a   ++ + ++e++++  +     e+++ v l+d  d+        lsggqkqrvaiara    p v l deatsald a+ + + + l  +  + + t + i+h +  +++  d++av++kg+++e gt  ++++
  MMETSP1137-20121227|6677_1 1229 NGYNLEIPAGYVCALCGPSGSGKSTIINLVQRFYDPSFGSITXDGYEVTKLRVQWL---RSQIGLVGQEPVL-FIGTVLENIAQG-KIGGATREEVEEAAKaanayEFITTV-LGDGFDTQvglgGGKLSGGQKQRVAIARAXVRXPAVXLLDEATSALDTASERVVQKALDSLMAKRKRTTITIAHRLSTIRN-ADKIAVVHKGQVVESGTYDKLLA 1439
                  56799**********************************************86655...99*******9765.567*******76.68888888888644311122455444.555555541122679**********************************************99999999********9976.8***************9988776 PP

  == domain 3    score: 36.1 bits;  conditional E-value: 1.2e-11
   TIGR02314   20 aldnvslfvpkgqifgvigasgagkstlircvnllekptsgavivdgkdlttlsnaelvkarrqig 85  
                    +  +l+vp gq++ + g sg+gkst+i  v+ +  p +g+v++dg+d+ tl+ + l   r+qig
  MMETSP1137-20121227|6677_1 1971 ICNGYTLHVPSGQVVALCGPSGSGKSTIIALVERFYDPQEGSVMLDGVDVRTLNVSWL---RQQIG 2033
                  556779**********************************************987655...55666 PP

>> TIGR03864  PQQ_ABC_ATP: ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  103.4   0.0   4.4e-32   2.8e-30       2     224 ..     480     712 ..     479     720 .. 0.83
   2 !  102.2   0.0   9.8e-32   6.1e-30       3     221 ..    1211    1439 ..    1209    1451 .. 0.86
   3 !   34.2   0.0     6e-11   3.8e-09      15      79 ..    1970    2035 .]    1953    2035 .] 0.82

  Alignments for each domain:
  == domain 1    score: 103.4 bits;  conditional E-value: 4.4e-32
   TIGR03864   2 leveglsfaygkr...ralddvsltvakgefvaLLGpnGaGkstLfslltrLyeakegeikvaGldlrrapkeala.rlGvvfqqstlDldlsveqnlryhaaLhGlsraeaeeriee....alarlglaeraeekvr....eLnGGhrrrveiarallhePklLLlDeatvGLDiesraalveevrelvreeglsvLWathlvdeveaedrlvvlhkGkvlaqGaaaelaaead 224
                 +ev+++ fay +    ++ ++ +l+++ g+++aL Gp G+Gkst++ l+ r y+ ++g++++ G++l++ +++ l+ ++ +v q++ l    +v +n+ y   L   +r+++ee  ++    +     la+  ++ v     +L+GG+++rv iara++ +P++LLlDeat  LD ++ +a+++++ ++ ++++ + +   h +  ++++d + v+++G ++ qG  +el+a ++
  MMETSP1137-20121227|6677_1 480 IEVKEVVFAYPSAphfNICNGYNLNIPAGAMCALCGPSGSGKSTIVGLMERFYDPQAGSLHLDGHNLKDLNVRWLRaQMSLVGQEPVLF-SGTVYENIAYG-VLGNATREQVEEAAKTgdahNFITKVLADGYDTDVGqgggKLSGGQKQRVAIARAMIKKPEILLLDEATSALDNAAEKAVQTALDKIRETKKRTTITIAHRLTTIRNSDIIAVVNRGVIVEQGNWEELCAMEG 712
                 67888888887652224567889**********************************************9999995389****999995.679******94.45555555544444321111333445777777777522237**********************************************99999999999******************************98765 PP

  == domain 2    score: 102.2 bits;  conditional E-value: 9.8e-32
   TIGR03864    3 eveglsfaygkrr...alddvsltvakgefvaLLGpnGaGkstLfslltrLyeakegeikvaGldlrrapkeala.rlGvvfqqstlDldlsveqnlryhaaLhGlsraeaeerieeala....rlglaeraeekv....reLnGGhrrrveiarallhePklLLlDeatvGLDiesraalveevrelvreeglsvLWathlvdeveaedrlvvlhkGkvlaqGaaaelaa 221 
                   v+++ fay +r+   + ++ +l+++ g ++aL Gp G+Gkst+++l+ r y+ + g+i+  G+++++ +++ l+ ++G+v q++ l +  +v +n+    ++ G +r+e+ee  ++a a       l +  +++v     +L+GG+++rv iara +  P++ LlDeat  LD++s + +++++ +l+++++ + +   h +  ++++d++ v+hkG+v+ +G+ ++l a
  MMETSP1137-20121227|6677_1 1211 VVTDVIFAYPTRAgfpICNGYNLEIPAGYVCALCGPSGSGKSTIINLVQRFYDPSFGSITXDGYEVTKLRVQWLRsQIGLVGQEPVLFIG-TVLENIA-QGKIGGATREEVEEAAKAANAyefiTTVLGDGFDTQVglggGKLSGGQKQRVAIARAXVRXPAVXLLDEATSALDTASERVVQKALDSLMAKRKRTTITIAHRLSTIRNADKIAVVHKGQVVESGTYDKLLA 1439
                  5667777777765222457889**************************************************99747*********9886.8999997.5789999999887766554331111556888888888444459***********************************************************************************999876 PP

  == domain 3    score: 34.2 bits;  conditional E-value: 6e-11
   TIGR03864   15 ralddvsltvakgefvaLLGpnGaGkstLfslltrLyeakegeikvaGldlrrapkeala.rlGvv 79  
                  ++ ++ +l+v++g++vaL Gp G+Gkst+++l+ r y+ +eg++ + G+d+r+ +++ l+ ++G+v
  MMETSP1137-20121227|6677_1 1970 TICNGYTLHVPSGQVVALCGPSGSGKSTIIALVERFYDPQEGSVMLDGVDVRTLNVSWLRqQIGLV 2035
                  4567789*********************************************99998886257765 PP

>> TIGR02315  ABC_phnC: phosphonate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.9   0.0   6.1e-32   3.8e-30       2     232 ..     480     706 ..     479     711 .. 0.83
   2 !  101.6   0.0   1.5e-31   9.5e-30      17     230 ..    1227    1434 ..    1209    1439 .. 0.84
   3 !   32.8   0.0   1.6e-10   9.8e-09      16      76 ..    1970    2030 ..    1954    2035 .] 0.80

  Alignments for each domain:
  == domain 1    score: 102.9 bits;  conditional E-value: 6.1e-32
   TIGR02315   2 levenlskvypngk..qalknvnleikkGelvaviGlsGaGkstllrsinrlveissgsillegkevtklkkkelrklrkkigmifqeynlierltvlenvLsgrlgakstlksllglfseedkekAlelLerv...glaelaakradqLsGGqqqRvaiaRalaqqpklilaDEPiasLDpksskqvmdllkrinkekgitvivnlHqvdlakkyadrivglkageivfdgasse 232
                 +ev+++   yp++   ++ +  nl+i  G + a+ G+sG+Gkst++  ++r+ +++ gs+ l+g+++++l   ++r lr++++++ qe  l    tv en+  g lg  +  + + +  ++     A + +++v   g +    +   +LsGGq+qRvaiaRa++++p+++l DE +++LD+++ k v  +l +i + k+ t+i   H++   ++ +d i  ++ g iv +g+ +e
  MMETSP1137-20121227|6677_1 480 IEVKEVVFAYPSAPhfNICNGYNLNIPAGAMCALCGPSGSGKSTIVGLMERFYDPQAGSLHLDGHNLKDL---NVRWLRAQMSLVGQEPVLF-SGTVYENIAYGVLGNATREQ-VEEAAKTG---DAHNFITKVladGYDTDVGQGGGKLSGGQKQRVAIARAMIKKPEILLLDEATSALDNAAEKAVQTALDKIRETKKRTTITIAHRLTTIRN-SDIIAVVNRGVIVEQGNWEE 706
                 7889999999976512567899******************************************999855...68999**********8776.579***********877655.44444444...455555555111666667788899************************************************************998765.67666778888887776655 PP

  == domain 2    score: 101.6 bits;  conditional E-value: 1.5e-31
   TIGR02315   17 alknvnleikkGelvaviGlsGaGkstllrsinrlveissgsillegkevtklkkkelrklrkkigmifqeynlierltvlenvLsgrlgakstlksllglfseedkekAlelLerv...glaelaakradqLsGGqqqRvaiaRalaqqpklilaDEPiasLDpksskqvmdllkrinkekgitvivnlHqvdlakkyadrivglkageivfdgas 230 
                  + +  nlei  G + a+ G+sG+Gkst++  ++r+ ++s gsi+ +g+evtkl+   ++ lr++ig++ qe  l    tvlen+ +g++g  +  + + +    ++ ++A+e ++ v   g++ +      +LsGGq+qRvaiaRa ++ p++ l DE +++LD +s + v ++l ++  +++ t+i   H+++  ++ ad+i  +++g++v  g+ 
  MMETSP1137-20121227|6677_1 1227 ICNGYNLEIPAGYVCALCGPSGSGKSTIINLVQRFYDPSFGSITXDGYEVTKLR---VQWLRSQIGLVGQEPVLF-IGTVLENIAQGKIGGATREE-VEEA---AKAANAYEFITTVlgdGFDTQVGLGGGKLSGGQKQRVAIARAXVRXPAVXLLDEATSALDTASERVVQKALDSLMAKRKRTTITIAHRLSTIRN-ADKIAVVHKGQVVESGTY 1434
                  567789*********************************************887...567789********7665.579**********9876544.3343...444455555555533378888888899**************************************************************98865.9***********977765 PP

  == domain 3    score: 32.8 bits;  conditional E-value: 1.6e-10
   TIGR02315   16 qalknvnleikkGelvaviGlsGaGkstllrsinrlveissgsillegkevtklkkkelrk 76  
                  ++ +   l++ +G++va+ G+sG+Gkst++  ++r+ ++++gs++l+g +v++l+ + lr+
  MMETSP1137-20121227|6677_1 1970 TICNGYTLHVPSGQVVALCGPSGSGKSTIIALVERFYDPQEGSVMLDGVDVRTLNVSWLRQ 2030
                  5566778999*****************************************9887665554 PP

>> TIGR00968  3a0106s01: sulfate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  100.4   0.0   3.7e-31   2.3e-29      12     218 ..     494     707 ..     480     715 .. 0.81
   2 !  100.2   0.0   4.4e-31   2.7e-29      15     218 ..    1227    1437 ..    1211    1442 .. 0.84
   3 !   35.4   0.0   2.7e-11   1.7e-09      14      77 ..    1970    2035 .]    1956    2035 .] 0.87

  Alignments for each domain:
  == domain 1    score: 100.4 bits;  conditional E-value: 3.7e-31
   TIGR00968  12 dfqalddvdlevktGslvallGpsGsGkstllrviaGlekpdsGrilleGrdvtrvkvr..dreiGfvfqhyalfkhltvrdniafGleir.kkdkakikakv...eellelvqleklgdry...psqlsGGqrqrvalaralavepqvllldepfgaldakvrkelrawlrklhdevkvttvfvthdqeealevadrivvlekGkieqvgsaeev 218
                 +f++ +  +l+++ G + al GpsGsGkst++ ++  + +p++G + l+G++   ++vr  + ++ +v q+  lf   tv +nia+G+  +  +++ +  ak    ++++  v  ++++        +lsGGq+qrva+ara+  +p++lllde  +ald    k +++ l k+ +  k tt+ ++h    ++  +d i+v+++G i + g  ee+
  MMETSP1137-20121227|6677_1 494 HFNICNGYNLNIPAGAMCALCGPSGSGKSTIVGLMERFYDPQAGSLHLDGHNLKDLNVRwlRAQMSLVGQEPVLFSG-TVYENIAYGVLGNaTREQVEEAAKTgdaHNFITKVLADGYDTDVgqgGGKLSGGQKQRVAIARAMIKKPEILLLDEATSALDNAAEKAVQTALDKIRETKKRTTITIAHRLT-TIRNSDIIAVVNRGVIVEQGNWEEL 707
                 57788899*********************************************999998556899**********86.9********75432344444444440004455444444444333111458***********************************************************865.5666888999999988877776665 PP

  == domain 2    score: 100.2 bits;  conditional E-value: 4.4e-31
   TIGR00968   15 alddvdlevktGslvallGpsGsGkstllrviaGlekpdsGrilleGrdvtrvkvr..dreiGfvfqhyalfkhltvrdniafGleir.....kkdkakikakveellelvqleklgdry...psqlsGGqrqrvalaralavepqvllldepfgaldakvrkelrawlrklhdevkvttvfvthdqeealevadrivvlekGkieqvgsaeev 218 
                  + +  +le++ G + al GpsGsGkst++ ++  + +p  G i+ +G +vt+++v+  + +iG+v q+  lf   tv +nia G  i        ++a++ a+  e++  v  ++++ +      +lsGGq+qrva+ara    p v llde  +ald+   + +++ l  l  + k tt+ ++h  + ++  ad+i+v++kG++ + g+ +++
  MMETSP1137-20121227|6677_1 1227 ICNGYNLEIPAGYVCALCGPSGSGKSTIINLVQRFYDPSFGSITXDGYEVTKLRVQwlRSQIGLVGQEPVLFIG-TVLENIAQGK-IGgatreEVEEAAKAANAYEFITTVLGDGFDTQVglgGGKLSGGQKQRVAIARAXVRXPAVXLLDEATSALDTASERVVQKALDSLMAKRKRTTITIAHRLS-TIRNADKIAVVHKGQVVESGTYDKL 1437
                  567789*********************************************9998855789***********75.9******984.32121113333444445556666666666666652224679**********************************************************876.5778************999987765 PP

  == domain 3    score: 35.4 bits;  conditional E-value: 2.7e-11
   TIGR00968   14 qalddvdlevktGslvallGpsGsGkstllrviaGlekpdsGrilleGrdvtrvkvr..dreiGfv 77  
                  ++ +   l+v++G++val GpsGsGkst++ ++  + +p++G ++l+G dv  ++v   +++iG+v
  MMETSP1137-20121227|6677_1 1970 TICNGYTLHVPSGQVVALCGPSGSGKSTIIALVERFYDPQEGSVMLDGVDVRTLNVSwlRQQIGLV 2035
                  55667789*******************************************877654226778765 PP

>> TIGR01277  thiQ: thiamine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  100.7   0.0   2.8e-31   1.8e-29      16     206 ..     500     703 ..     480     709 .. 0.78
   2 !   94.1   0.0   3.1e-29   1.9e-27      16     208 ..    1230    1429 ..    1210    1433 .. 0.79
   3 !   33.7   0.0     9e-11   5.6e-09      13      65 ..    1971    2023 ..    1954    2029 .. 0.80

  Alignments for each domain:
  == domain 1    score: 100.7 bits;  conditional E-value: 2.8e-31
   TIGR01277  16 efdlsveaGervailGesGaGkstllnliaGflepasGeikvndkdhtrs..apyerpvsmlfqennlfahltvrqniglGlkpglkl.navqkek...vedvarqv...GiadylerlpeelsGGqrqrvalarclvrekpillldepfsaldpklreemlalvkkladekkltlllvthsl.....sdaaaiasqvvvvedGk 206
                  ++l++ aG   a+ G+sG+Gkst++ l+  f  p  G++++++++   +     +  +s++ qe  lf+  tv +ni+ G+       + ++  k    ++  ++v   G +  + +  ++lsGGq+qrva+ar ++++  illlde  sald++  + + + + k+ + kk+t + ++h+l     sd++a++++ v+ve+G+
  MMETSP1137-20121227|6677_1 500 GYNLNIPAGAMCALCGPSGSGKSTIVGLMERFYDPQAGSLHLDGHNLKDLnvRWLRAQMSLVGQEPVLFSG-TVYENIAYGVLGNATReQVEEAAKtgdAHNFITKVladGYDTDVGQGGGKLSGGQKQRVAIARAMIKKPEILLLDEATSALDNAAEKAVQTALDKIRETKKRTTITIAHRLttirnSDIIAVVNRGVIVEQGN 703
                 489*****************************************99765511567889***********96.9********86544330333333311144444455222444445666789***********************************************************873333356777777777777775 PP

  == domain 2    score: 94.1 bits;  conditional E-value: 3.1e-29
   TIGR01277   16 efdlsveaGervailGesGaGkstllnliaGflepasGeikvndkdhtrs..apyerpvsmlfqennlfahltvrqniglGlkpglklnav.qkekvedvarqv......GiadylerlpeelsGGqrqrvalarclvrekpillldepfsaldpklreemlalvkkladekkltlllvthslsdaaaiasqvvvvedGkik 208 
                   ++l++ aG   a+ G+sG+Gkst++nl+  f  p  G+i+ ++ ++t++     +  + ++ qe  lf   tv +ni+ G   g   + v +  k  ++ + +      G +  +    ++lsGGq+qrva+ar  vr   + llde  sald +  + +   +  l  ++k+t + ++h+ls + + a++++vv++G++ 
  MMETSP1137-20121227|6677_1 1230 GYNLEIPAGYVCALCGPSGSGKSTIINLVQRFYDPSFGSITXDGYEVTKLrvQWLRSQIGLVGQEPVLFIG-TVLENIAQGKIGGATREEVeEAAKAANAYEFIttvlgdGFDTQVGLGGGKLSGGQKQRVAIARAXVRXPAVXLLDEATSALDTASERVVQKALDSLMAKRKRTTITIAHRLSTI-RNADKIAVVHKGQVV 1429
                  389****************************************999887511566889999********75.9******996665544333033333332221111123356666666689***********************************99999999999999*************975.679**********96 PP

  == domain 3    score: 33.7 bits;  conditional E-value: 9e-11
   TIGR01277   13 lplefdlsveaGervailGesGaGkstllnliaGflepasGeikvndkdhtrs 65  
                      + l v +G+ va+ G+sG+Gkst+++l+  f  p +G+++++++d+ ++
  MMETSP1137-20121227|6677_1 1971 ICNGYTLHVPSGQVVALCGPSGSGKSTIIALVERFYDPQEGSVMLDGVDVRTL 2023
                  344589******************************************99775 PP

>> TIGR00960  3a0501s02: type II secretory pathway family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.9   0.0   7.9e-29   4.9e-27       2     201 ..     480     684 ..     479     698 .. 0.79
   2 !   86.4   0.0   7.7e-27   4.8e-25      17     204 ..    1226    1417 ..    1210    1428 .. 0.80
   3 !   39.2   0.0   2.1e-12   1.3e-10       2      85 ..    1954    2035 .]    1953    2035 .] 0.92

  Alignments for each domain:
  == domain 1    score: 92.9 bits;  conditional E-value: 7.9e-29
   TIGR00960   2 ikfeqvskaykgaaelal.dnvtvkiekGelvflvGhsGaGkstllklilgiekpsaGkirvsgqdltklrdrevpflrrqiGivfqdfkllsdrtvydnvalalriiGvkgreieervs......aalekvGlkdkakal...PvqlsgGeqqrvaiaravvnkPallladePtgnlddelsrdilelleevnraG.ttvlvathdenlv 201
                 i++++v  ay++a +  + ++ +++i+ G +  l G+sG+Gkst++ l+     p+aG +++ g++l+   d +v  lr q+ +v q+  +l   tvy+n+a    ++G  +re  e +       + + kv   + ++++     +lsgG++qrvaiara+++kP++ll de t+ ld++  + +   l++++++   t +  +h  + +
  MMETSP1137-20121227|6677_1 480 IEVKEVVFAYPSAPHFNIcNGYNLNIPAGAMCALCGPSGSGKSTIVGLMERFYDPQAGSLHLDGHNLK---DLNVRWLRAQMSLVGQEP-VLFSGTVYENIAYG--VLGNATREQVEEAAktgdahNFITKVLADGYDTDVgqgGGKLSGGQKQRVAIARAMIKKPEILLLDEATSALDNAAEKAVQTALDKIRETKkRTTITIAHRLTTI 684
                 788999999*999776542889*******************************************865...56799***********86.66778*****9875..78888876655443111111457788555555554111569*********************************************9876423445555655544 PP

  == domain 2    score: 86.4 bits;  conditional E-value: 7.7e-27
   TIGR00960   17 laldnvtvkiekGelvflvGhsGaGkstllklilgiekpsaGkirvsgqdltklrdrevpflrrqiGivfqdfkllsdrtvydnvalalriiGvkgreieervsaa.....lekv...GlkdkakalPvqlsgGeqqrvaiaravvnkPallladePtgnlddelsrdilelleev.nraGttvlvathdenlvesk 204 
                  +  ++ +++i+ G +  l G+sG+Gkst+++l+     ps G i   g+++tklr   v  lr qiG+v q+  l    tv++n+a   +i G++ +e+ee ++aa     + +v   G+  +      +lsgG++qrvaiara v+ Pa+ l de t+ ld +  r + + l+++  ++  t +  +h  + + + 
  MMETSP1137-20121227|6677_1 1226 PICNGYNLEIPAGYVCALCGPSGSGKSTIINLVQRFYDPSFGSITXDGYEVTKLR---VQWLRSQIGLVGQEPVL-FIGTVLENIAQG-KIGGATREEVEEAAKAAnayefITTVlgdGFDTQVGLGGGKLSGGQKQRVAIARAXVRXPAVXLLDEATSALDTASERVVQKALDSLmAKRKRTTITIAHRLSTIRNA 1417
                  4567899*********************************************996...889**********9755.5679****9965.89999999999988776444445666555666666667789*************************************999999986334444555555666555544 PP

  == domain 3    score: 39.2 bits;  conditional E-value: 2.1e-12
   TIGR00960    2 ikfeqvskaykgaaelal.dnvtvkiekGelvflvGhsGaGkstllklilgiekpsaGkirvsgqdltklrdrevpflrrqiGiv 85  
                  i++++v  ay++  + ++ ++ t++++ G++v l G+sG+Gkst++ l+     p++G +++ g d+ +l   +v+ lr+qiG+v
  MMETSP1137-20121227|6677_1 1954 IQLQDVVFAYPTRLDYTIcNGYTLHVPSGQVVALCGPSGSGKSTIIALVERFYDPQEGSVMLDGVDVRTL---NVSWLRQQIGLV 2035
                  7889999999998876653789********************************************9887...699*******97 PP

>> TIGR01188  drrA: daunorubicin resistance ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.4   0.0   2.2e-28   1.4e-26       7     228 ..     496     724 ..     492     774 .. 0.79
   2 !   98.1   0.1   1.9e-30   1.2e-28       9     217 ..    1228    1442 ..    1223    1545 .. 0.81
   3 !   30.7   0.0   6.5e-10     4e-08      10      71 ..    1973    2035 .]    1968    2035 .] 0.92

  Alignments for each domain:
  == domain 1    score: 91.4 bits;  conditional E-value: 2.2e-28
   TIGR01188   7 kAvdgvnlkveegevfglLGPnGAGKtttikmLttllkPdsGtarvaGyDvvr.epdevRrsigvvpqkasvdedLtarenle..llgel..yglpkkeaeeraeellelvelkeaadkkvkt....ysgGmrrrlelaasliaqPevlfLDEPtiGLDprtrraiwdlieelkke.gvtilltthyleeadkladrvaiidkGkiiaedtpeeLKervgkevveverrdik 228
                 +  +g nl++++g + +l GP G GK+t++ ++     P++G+  + G+++   + + +R ++++v+q+  + +  t +en+   +lg+     ++++++   a++ +  v l +  d  v++    +sgG+++r+ +a+++i++Pe+l LDE t+ LD  + +a+   +++++++ + t++  +h l  +   +d +a++++G+i+ ++  eeL +  g+ + ++ +++ k
  MMETSP1137-20121227|6677_1 496 NICNGYNLNIPAGAMCALCGPSGSGKSTIVGLMERFYDPQAGSLHLDGHNLKDlNVRWLRAQMSLVGQEPVLFSG-TVYENIAygVLGNAtrEQVEEAAKTGDAHNFITKV-LADGYDTDVGQgggkLSGGQKQRVAIARAMIKKPEILLLDEATSALDNAAEKAVQTALDKIRETkKRTTITIAHRLTTIR-NSDIIAVVNRGVIVEQGNWEELCAMEGGLFRKLAEKQQK 724
                 566789********************************************97547889***********998876.89999862222222002334444444455666555.6777777775433339**********************************************9978999999****9986.59********************97555555443332222 PP

  == domain 2    score: 98.1 bits;  conditional E-value: 1.9e-30
   TIGR01188    9 vdgvnlkveegevfglLGPnGAGKtttikmLttllkPdsGtarvaGyDvvr.epdevRrsigvvpqkasvdedLtarenlellgelyglpkkeaee..raeellelve..lkeaadkkvk....tysgGmrrrlelaasliaqPevlfLDEPtiGLDprtrraiwdlieelkke.gvtilltthyleeadkladrvaiidkGkiiaedtpeeLKervgk 217 
                   +g nl++++g v +l GP G GK+t+i+++     P+ G+ +  Gy+v++   + +R +ig+v+q+  +    t  en+   g++ g  ++e ee  +a++  e++   l +  d +v+    ++sgG+++r+ +a++ +  P+v  LDE t+ LD+ + r++ + +++l  + + t++  +h l  +   ad++a+++kG+++  +t ++L + +g+
  MMETSP1137-20121227|6677_1 1228 CNGYNLEIPAGYVCALCGPSGSGKSTIINLVQRFYDPSFGSITXDGYEVTKlRVQWLRSQIGLVGQEPVLFIG-TVLENIA-QGKIGGATREEVEEaaKAANAYEFITtvLGDGFDTQVGlgggKLSGGQKQRVAIARAXVRXPAVXLLDEATSALDTASERVVQKALDSLMAKrKRTTITIAHRLSTIR-NADKIAVVHKGQVVESGTYDKLLA-IGQ 1442
                  67889*********************************************9345689**********998865.8889986.6888888877766522455556655433889999999544448*********************************************98877999999*****9986.59*****************99985.333 PP

  == domain 3    score: 30.7 bits;  conditional E-value: 6.5e-10
   TIGR01188   10 dgvnlkveegevfglLGPnGAGKtttikmLttllkPdsGtarvaGyDv.vrepdevRrsigvv 71  
                  +g +l+v+ g+v++l GP G GK+t+i ++     P++G++++ G Dv + + + +R++ig+v
  MMETSP1137-20121227|6677_1 1973 NGYTLHVPSGQVVALCGPSGSGKSTIIALVERFYDPQEGSVMLDGVDVrTLNVSWLRQQIGLV 2035
                  57789*******************************************5568889******97 PP

>> TIGR03873  F420-0_ABC_ATP: proposed F420-0 ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.8   0.0   7.1e-29   4.4e-27      15     223 ..     496     706 ..     489     711 .. 0.82
   2 !   86.4   0.0   6.5e-27     4e-25      13     225 ..    1224    1438 ..    1218    1447 .. 0.89
   3 !   37.0   0.0   7.4e-12   4.6e-10      15      70 ..    1970    2025 ..    1962    2035 .] 0.91

  Alignments for each domain:
  == domain 1    score: 92.8 bits;  conditional E-value: 7.1e-29
   TIGR03873  15 livddvdvtaPaGaltgllGPnGsGkstllrllaGllapdaGevdlagadlkalsrrararrvalveqdsdaevplsvrdvvalGriPhrslfaadsded....aevvdralarvelssladrdlstlsGGerqrvhlaralaqePklllldePtnhldvsaqlellalvrela.aegvtvvvalhdlnlaasvcdhvvvldgGrvvaaGppae 223
                  i ++ +++ PaGa+ +l GP GsGkst++ l+     p+aG+++l+g++lk l+ r    +++lv q+     + +v + +a G +   ++   + ++     ++ + ++la+   +++ +     lsGG++qrv +ara+ ++P++lllde t  ld +a  ++ +++ ++  +++ t++   h l+  ++ +d + v++ G +v  G+ +e
  MMETSP1137-20121227|6677_1 496 NICNGYNLNIPAGAMCALCGPSGSGKSTIVGLMERFYDPQAGSLHLDGHNLKDLNVRWLRAQMSLVGQEPV-LFSGTVYENIAYGVLGNATREQVEEAAKtgdaHNFITKVLADGYDTDVGQ-GGGKLSGGQKQRVAIARAMIKKPEILLLDEATSALDNAAEKAVQTALDKIReTKKRTTITIAHRLTT-IRNSDIIAVVNRGVIVEQGNWEE 706
                 57889999*************************************************9999*******865.56779999999888777666655555550000555555555555555443.4568************************************999888877762356677778899985.7889************9998665 PP

  == domain 2    score: 86.4 bits;  conditional E-value: 6.5e-27
   TIGR03873   13 grlivddvdvtaPaGaltgllGPnGsGkstllrllaGllapdaGevdlagadlkalsrrararrvalveqdsdaevplsvrdvvalGriPhrslfaadsdedaevvdralarvelssladrd...lstlsGGerqrvhlaralaqePklllldePtnhldvsaqlellalvrelaae.gvtvvvalhdlnlaasvcdhvvvldgGrvvaaGppaevl 225 
                  g +i ++ +++ PaG + +l GP GsGkst+++l+     p+ G+++ +g +++ l+ +    ++ lv q+    +  +v + +a G+i   ++   + ++ a+ + + +++v  + + ++       lsGG++qrv +ara  + P + llde t  ld ++   + +++ +l+a+ + t++   h l+  ++ +d++ v+++G+vv +G+  ++l
  MMETSP1137-20121227|6677_1 1224 GFPICNGYNLEIPAGYVCALCGPSGSGKSTIINLVQRFYDPSFGSITXDGYEVTKLRVQWLRSQIGLVGQEPVLFI-GTVLENIAQGKIGGATREEVEEAAKAANAYEFITTVLGDGFDTQVglgGGKLSGGQKQRVAIARAXVRXPAVXLLDEATSALDTASERVVQKALDSLMAKrKRTTITIAHRLST-IRNADKIAVVHKGQVVESGTYDKLL 1438
                  56789999****************************************************99********976655.59*************999999999999999999999888887764211468***********************************9999999998875516688888899985.7899***************998877 PP

  == domain 3    score: 37.0 bits;  conditional E-value: 7.4e-12
   TIGR03873   15 livddvdvtaPaGaltgllGPnGsGkstllrllaGllapdaGevdlagadlkalsr 70  
                  +i ++ ++ +P+G++ +l GP GsGkst++ l+     p++G+v l+g+d+++l+ 
  MMETSP1137-20121227|6677_1 1970 TICNGYTLHVPSGQVVALCGPSGSGKSTIIALVERFYDPQEGSVMLDGVDVRTLNV 2025
                  6889999*********************************************9975 PP

>> TIGR02982  heterocyst_DevA: ABC exporter ATP-binding subunit, DevA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.7   0.0   4.8e-30     3e-28      19     218 ..     496     697 ..     479     705 .. 0.81
   2 !   91.1   0.0   2.6e-28   1.6e-26      22     219 ..    1229    1428 ..    1222    1429 .. 0.88
   3 !   27.2   0.0   9.1e-09   5.6e-07      19      86 ..    1970    2034 ..    1954    2035 .] 0.83

  Alignments for each domain:
  == domain 1    score: 96.7 bits;  conditional E-value: 4.8e-30
   TIGR02982  19 qvlfdinleiepgeiviltGpsGsGkttlltligglrsvqeGelkvlgkelkgasekelvqvrrkiGyifqahnllesltaeqnvr...malelkeklsakeakakaeelleavglee...rldykpedlsgGqkqrvaiaralvarPklvladePtaaldkksgrevvellqklareqgttillvthdnrildvadrivkmedGk 218
                 ++ +  nl+i +g +  l GpsGsGk t++ l+  +   q G+l++ g++lk+++   +  +r ++ ++ q+  l++  t+ +n+    ++   +e++++++++ +a++++++v+ +     + +   +lsgGqkqrvaiara++++P+++l de t+ald+ + ++v + l k+ + +  t + ++h    +  +d i  +++G 
  MMETSP1137-20121227|6677_1 496 NICNGYNLNIPAGAMCALCGPSGSGKSTIVGLMERFYDPQAGSLHLDGHNLKDLN---VRWLRAQMSLVGQEPVLFS-GTVYENIAygvLGNATREQVEEAAKTGDAHNFITKVLADGydtDVGQGGGKLSGGQKQRVAIARAMIKKPEILLLDEATSALDNAAEKAVQTALDKIRETKKRTTITIAHRLTTIRNSDIIAVVNRGV 697
                 678899*******************************************999876...567899*******998886.5999***8222455777888888999999****99965543338888999**********************************************99999999988888644444444444444333 PP

  == domain 2    score: 91.1 bits;  conditional E-value: 2.6e-28
   TIGR02982   22 fdinleiepgeiviltGpsGsGkttlltligglrsvqeGelkvlgkelkgasekelvqvrrkiGyifqahnllesltaeqnv...rmalelkeklsakeakakaeelleav...gleerldykpedlsgGqkqrvaiaralvarPklvladePtaaldkksgrevvellqklareqgttillvthdnrildvadrivkmedGkl 219 
                  +  nlei +g +  l GpsGsGk t+++l+  +     G+++  g e   +++ +++ +r +iG++ q+  l+   t+ +n+   +++   +e++++++++a+a e++++v   g++ ++     +lsgGqkqrvaiara v  P + l de t+ald+ s r v + l  l  ++  t + ++h    +  ad+i  + +G++
  MMETSP1137-20121227|6677_1 1229 NGYNLEIPAGYVCALCGPSGSGKSTIINLVQRFYDPSFGSITXDGYE---VTKLRVQWLRSQIGLVGQEPVLFI-GTVLENIaqgKIGGATREEVEEAAKAANAYEFITTVlgdGFDTQVGLGGGKLSGGQKQRVAIARAXVRXPAVXLLDEATSALDTASERVVQKALDSLMAKRKRTTITIAHRLSTIRNADKIAVVHKGQV 1428
                  6789************************************9987766...566788999*********998884.47777773335777899999999999999999999844446668888999**********************************************999999999999999999999****99999986 PP

  == domain 3    score: 27.2 bits;  conditional E-value: 9.1e-09
   TIGR02982   19 qvlfdinleiepgeiviltGpsGsGkttlltligglrsvqeGelkvlgkelkgasekelvqvrrkiGy 86  
                   + +   l++ +g++v l GpsGsGk t+++l+  +   qeG++ + g +++ ++   +  +r++iG+
  MMETSP1137-20121227|6677_1 1970 TICNGYTLHVPSGQVVALCGPSGSGKSTIIALVERFYDPQEGSVMLDGVDVRTLN---VSWLRQQIGL 2034
                  56677899************************************99998877654...5556677765 PP

>> TIGR03265  PhnT2: putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.3   0.0   1.1e-31   6.8e-30      16     222 ..     494     707 ..     477     714 .. 0.83
   2 !   94.0   0.0   3.5e-29   2.2e-27      21     220 ..    1229    1435 ..    1220    1440 .. 0.85
   3 !   18.7   0.0   2.9e-06   0.00018      18      72 ..    1970    2024 ..    1954    2035 .] 0.88

  Alignments for each domain:
  == domain 1    score: 102.3 bits;  conditional E-value: 1.1e-31
   TIGR03265  16 aftalkdislsvkkgelvclLGPsGCGkttLLriiaGLekqdaGaillggrditrlppq..krdyGivfqsYaLfPnltvaeniayGLknkk.lkreevaerveelLelv......glsgseekyPgqlsGGqqqrvaLaralalsPglLLLDePlsaLDakvrekLreelkklqrklgvttimvthdqeealslaDrivvmnkgkieqvgtPeei 222
                 +f++ +  +l++ +g + +l GPsG Gk+t++ ++  + +++aG+++l+g+++ +l ++  + +  +v q  +Lf   tv eniayG+ ++  +++ e a++   + + +      g ++   +  g+lsGGq+qrva+ara++ +P++LLLDe  saLD    + +++ l k+++  + tti ++h     +  +D i+v+n+g+i   g  ee+
  MMETSP1137-20121227|6677_1 494 HFNICNGYNLNIPAGAMCALCGPSGSGKSTIVGLMERFYDPQAGSLHLDGHNLKDLNVRwlRAQMSLVGQEPVLFSG-TVYENIAYGVLGNAtREQVEEAAKTGDAHNFItkvladGYDTDVGQGGGKLSGGQKQRVAIARAMIKKPEILLLDEATSALDNAAEKAVQTALDKIRETKKRTTITIAHRL-TTIRNSDIIAVVNRGVIVEQGNWEEL 707
                 78889999**********************************************99987436789**********76.*********76554044444455544444443111233445555667899***********************************************************86.57999************999987776 PP

  == domain 2    score: 94.0 bits;  conditional E-value: 3.5e-29
   TIGR03265   21 kdislsvkkgelvclLGPsGCGkttLLriiaGLekqdaGaillggrditrlppq..krdyGivfqsYaLfPnltvaeniayGLknkk.lkreevaerveelLelv......glsgseekyPgqlsGGqqqrvaLaralalsPglLLLDePlsaLDakvrekLreelkklqrklgvttimvthdqeealslaDrivvmnkgkieqvgtPe 220 
                  +  +l++ +g + +l GPsG Gk+t++ ++  + +++ G+i+ +g ++t+l +q  + + G+v q  +Lf   tv enia G  +   +++ e a++ +++ e +      g++++     g+lsGGq+qrva+ara +  P + LLDe  saLD      +++ l +l  k + tti ++h     +  aD+i+v+ kg++   gt  
  MMETSP1137-20121227|6677_1 1229 NGYNLEIPAGYVCALCGPSGSGKSTIINLVQRFYDPSFGSITXDGYEVTKLRVQwlRSQIGLVGQEPVLFIG-TVLENIAQGKIGGAtREEVEEAAKAANAYEFIttvlgdGFDTQVGLGGGKLSGGQKQRVAIARAXVRXPAVXLLDEATSALDTASERVVQKALDSLMAKRKRTTITIAHRL-STIRNADKIAVVHKGQVVESGTYD 1435
                  56789999999999*************************************998546789**********86.9******9965533033334445555555555222454566666677899********************************9999999********************86.57999***************9965 PP

  == domain 3    score: 18.7 bits;  conditional E-value: 2.9e-06
   TIGR03265   18 talkdislsvkkgelvclLGPsGCGkttLLriiaGLekqdaGaillggrditrlp 72  
                  t+ +   l+v  g +v+l GPsG Gk+t++ ++  + ++++G+++l+g d+ +l 
  MMETSP1137-20121227|6677_1 1970 TICNGYTLHVPSGQVVALCGPSGSGKSTIIALVERFYDPQEGSVMLDGVDVRTLN 2024
                  666777899****************************************998775 PP

>> TIGR01187  potA: polyamine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  101.0   0.0   2.2e-31   1.4e-29       1     189 [.     513     708 ..     513     716 .. 0.81
   2 !   93.1   0.1   5.9e-29   3.7e-27       1     186 [.    1243    1435 ..    1243    1441 .. 0.83
   3 !   21.5   0.0   3.7e-07   2.3e-05       1      37 [.    1987    2023 ..    1987    2035 .] 0.84

  Alignments for each domain:
  == domain 1    score: 101.0 bits;  conditional E-value: 2.2e-31
   TIGR01187   1 lLGpsGsGkttlLrllaGleeldsGkilldgedvte..vpaekrsvnvvfqsyaLfPhmtveenvafgLkmrk.vpkaeiker...vkeaLelvqleefak...rkpsqlsGGqrqrvalaravvkkPkiLLlDeplsaLDkkLrdqmqlelkalqeklGitvvlvthDqeealtmsdriavlrkGkiaqigepeeiy 189
                 l GpsGsGk+t++ l+  + ++++G++ ldg+++ +  v   + ++ +v q+  Lf   tv en+a+g+  +   ++ e +++    ++ ++ v  +++ +   +   +lsGGq+qrva+ara++kkP+iLLlDe+ saLD+   + +q+ l +++e    t++ ++h     +  sd iav+++G i+  g+ ee+ 
  MMETSP1137-20121227|6677_1 513 LCGPSGSGKSTIVGLMERFYDPQAGSLHLDGHNLKDlnVRWLRAQMSLVGQEPVLFS-GTVYENIAYGVLGNAtREQVEEAAKtgdAHNFITKVLADGYDTdvgQGGGKLSGGQKQRVAIARAMIKKPEILLLDEATSALDNAAEKAVQTALDKIRETKKRTTITIAHRL-TTIRNSDIIAVVNRGVIVEQGNWEELC 708
                 57********************************86114556778999********7.59********75433033334444400044455555555544311133468***********************************************************65.6899***************99999875 PP

  == domain 2    score: 93.1 bits;  conditional E-value: 5.9e-29
   TIGR01187    1 lLGpsGsGkttlLrllaGleeldsGkilldgedvtevpae..krsvnvvfqsyaLfPhmtveenvafgLkmrkvpkaeikervk.....eaLelvqleefakrkp...sqlsGGqrqrvalaravvkkPkiLLlDeplsaLDkkLrdqmqlelkalqeklGitvvlvthDqeealtmsdriavlrkGkiaqigepe 186 
                  l GpsGsGk+t++ l+  + ++++G+i  dg +vt+   +  + ++++v q+  Lf   tv en+a g k+ +  ++e++e  k     e +++v  ++f ++      +lsGGq+qrva+ara v  P + LlDe+ saLD      +q+ l +l  k   t++ ++h     +  +d+iav++kG+++  g+ +
  MMETSP1137-20121227|6677_1 1243 LCGPSGSGKSTIINLVQRFYDPSFGSITXDGYEVTKLRVQwlRSQIGLVGQEPVLFI-GTVLENIAQG-KIGGATREEVEEAAKaanayEFITTVLGDGFDTQVGlggGKLSGGQKQRVAIARAXVRXPAVXLLDEATSALDTASERVVQKALDSLMAKRKRTTITIAHRL-STIRNADKIAVVHKGQVVESGTYD 1435
                  57*********************************8654322678***********7.59******98.77777777766554411111445555444454443222269***********************************************************76.5899*************9998765 PP

  == domain 3    score: 21.5 bits;  conditional E-value: 3.7e-07
   TIGR01187    1 lLGpsGsGkttlLrllaGleeldsGkilldgedvtev 37  
                  l GpsGsGk+t++ l+  + ++++G+++ldg+dv + 
  MMETSP1137-20121227|6677_1 1987 LCGPSGSGKSTIIALVERFYDPQEGSVMLDGVDVRTL 2023
                  57*******************************9653 PP

>> TIGR02673  FtsE: cell division ATP-binding protein FtsE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   93.5   0.0   4.8e-29     3e-27       2     201 ..     480     685 ..     479     701 .. 0.78
   2 !   81.5   0.0   2.3e-25   1.4e-23       5     205 ..    1213    1419 ..    1210    1427 .. 0.79
   3 !   38.4   0.0   3.6e-12   2.2e-10       2      84 ..    1954    2035 .]    1953    2035 .] 0.91

  Alignments for each domain:
  == domain 1    score: 93.5 bits;  conditional E-value: 4.8e-29
   TIGR02673   2 ielekvskeya..agveaLkdvslkiekgeflfltGasGaGkttllklllgaekpsrGevevagedvarlrerelpllRrkigvvfqDfkllkdrtvlenvalalevrgk.keeeiqkr...veevlelv...gledkakalpeelsgGeqqRvaiaRaivnkPelllaDePtGnlDdelserildllkelnkr.Gttvivathdeelve 201
                 ie+++v ++y+   ++++ +  +l+i +g ++ l G+sG+Gk+t++ l+     p++G+++++g+++++l+   +  lR ++++v q+   l + tv+en+a  +  + + ++ e   +    ++ +++v   g +  + +   +lsgG +qRvaiaRa+++kPe+ll De t  lD++ ++ + + l ++ ++   t i  +h  + ++
  MMETSP1137-20121227|6677_1 480 IEVKEVVFAYPsaPHFNICNGYNLNIPAGAMCALCGPSGSGKSTIVGLMERFYDPQAGSLHLDGHNLKDLN---VRWLRAQMSLVGQEPV-LFSGTVYENIAYGVLGNATrEQVEEAAKtgdAHNFITKVladGYDTDVGQGGGKLSGGQKQRVAIARAMIKKPEILLLDEATSALDNAAEKAVQTALDKIRETkKRTTITIAHRLTTIR 685
                 788999999*954578999**********************************************998886...6689*********975.5678*******9764322202222222201133334443233556666677889***************************************99999986531344455556665555 PP

  == domain 2    score: 81.5 bits;  conditional E-value: 2.3e-25
   TIGR02673    5 ekvskeya..agveaLkdvslkiekgeflfltGasGaGkttllklllgaekpsrGevevagedvarlrerelpllRrkigvvfqDfkllkdrtvlenvalalevrgkkeeeiqkrveev.....lelv...gledkakalpeelsgGeqqRvaiaRaivnkPelllaDePtGnlDdelserildllkeln.krGttvivathdeelvervkk 205 
                  ++v ++y+  ag+ + +  +l+i +g ++ l G+sG+Gk+t+++l+     ps G+++ +g +v++lr   +  lR +ig+v q+  l    tvlen+a   ++ g+++ee+++  +++     +++v   g++ ++     +lsgG +qRvaiaRa v+ P++ l De t  lD + ++ + + l +l  kr  t i  +h  + +++ +k
  MMETSP1137-20121227|6677_1 1213 TDVIFAYPtrAGFPICNGYNLEIPAGYVCALCGPSGSGKSTIINLVQRFYDPSFGSITXDGYEVTKLR---VQWLRSQIGLVGQEPVL-FIGTVLENIAQG-KIGGATREEVEEAAKAAnayefITTVlgdGFDTQVGLGGGKLSGGQKQRVAIARAXVRXPAVXLLDEATSALDTASERVVQKALDSLMaKRKRTTITIAHRLSTIRNADK 1419
                  5677788744567889999*********************************************9996...779**********9765.5679******75.6666666666554443211111333334467778888899**********************************999999999988651556677777898888877654 PP

  == domain 3    score: 38.4 bits;  conditional E-value: 3.6e-12
   TIGR02673    2 ielekvskeyaa..gveaLkdvslkiekgeflfltGasGaGkttllklllgaekpsrGevevagedvarlrerelpllRrkigvv 84  
                  i+l++v ++y++  + ++ +  +l++  g+++ l G+sG+Gk+t++ l+     p++G+v ++g dv++l+   ++ lR++ig+v
  MMETSP1137-20121227|6677_1 1954 IQLQDVVFAYPTrlDYTICNGYTLHVPSGQVVALCGPSGSGKSTIIALVERFYDPQEGSVMLDGVDVRTLN---VSWLRQQIGLV 2035
                  78999*****9722567899**********************************************99885...8899****987 PP

>> TIGR03608  L_ocin_972_ABC: putative bacteriocin export ABC transporter, lactococcin 972 group
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.3   0.0   2.3e-29   1.4e-27      12     201 ..     496     688 ..     485     693 .. 0.83
   2 !   81.7   0.0   1.7e-25   1.1e-23      13     203 ..    1227    1420 ..    1214    1423 .. 0.81
   3 !   30.7   0.0     7e-10   4.4e-08      11      66 ..    1969    2024 ..    1956    2034 .. 0.87

  Alignments for each domain:
  == domain 1    score: 94.3 bits;  conditional E-value: 2.3e-29
   TIGR03608  12 eilkklslkiekGelvaivGesGsGKstlLnilgllekkdsgkvilegkekaklkskkaskllreklgylFqnfaLlenetveenlelalklkkkskkekekk....kkevlekv...glekklkkkiyelsgGekqRvalarillkeselilADEPtgsLDkknreevlellkelkee.gktiiivtHdpevaekad 201
                 +i +  +l+i +G + a++G sGsGKst++ ++ ++ +++ g++ l+g++   l +  + + lr +++ + q+  L  + tv en+  ++  + + ++ +e +      + + kv   g +++  +   +lsgG+kqRva+ar+++k++e++l DE t++LD+  +++v + l++++e+  +t i + H  +  +++d
  MMETSP1137-20121227|6677_1 496 NICNGYNLNIPAGAMCALCGPSGSGKSTIVGLMERFYDPQAGSLHLDGHN---L-KDLNVRWLRAQMSLVGQEPVLF-SGTVYENIAYGVLGNATREQVEEAAktgdAHNFITKVladGYDTDVGQGGGKLSGGQKQRVAIARAMIKKPEILLLDEATSALDNAAEKAVQTALDKIRETkKRTTITIAHRLTTIRNSD 688
                 688999********************************************...3.34567899**********9887.68********998776555433333011145666666333446677788889*********************************************98751578999999887766655 PP

  == domain 2    score: 81.7 bits;  conditional E-value: 1.7e-25
   TIGR03608   13 ilkklslkiekGelvaivGesGsGKstlLnilgllekkdsgkvilegkekaklkskkaskllreklgylFqnfaLlenetveenlelalkl.kkkskkekekkkkevlekv......glekklkkkiyelsgGekqRvalarillkeselilADEPtgsLDkknreevlellkel.keegktiiivtHdpevaekadrv 203 
                  i +  +l+i +G + a++G sGsGKst++n++ ++ +++ g+++ +g e     +k   + lr+++g + q+  L    tv en+  + +    +++ e+  k  ++ e +      g++++      +lsgG+kqRva+ar+ ++ + + l DE t++LD+ ++ +v + l++l +++ +t i + H  +  ++ad++
  MMETSP1137-20121227|6677_1 1227 ICNGYNLEIPAGYVCALCGPSGSGKSTIINLVQRFYDPSFGSITXDGYE----VTKLRVQWLRSQIGLVGQEPVLF-IGTVLENIAQGKIGgATREEVEEAAKAANAYEFIttvlgdGFDTQVGLGGGKLSGGQKQRVAIARAXVRXPAVXLLDEATSALDTASERVVQKALDSLmAKRKRTTITIAHRLSTIRNADKI 1420
                  67889********************************************....45677899***********9887.5799999987755413334444444444444443110222334444444579*******************************************9972577899********999999987 PP

  == domain 3    score: 30.7 bits;  conditional E-value: 7e-10
   TIGR03608   11 keilkklslkiekGelvaivGesGsGKstlLnilgllekkdsgkvilegkekaklk 66  
                   +i +   l++ +G++va++G sGsGKst++ ++ ++ ++++g+v+l+g + ++l+
  MMETSP1137-20121227|6677_1 1969 YTICNGYTLHVPSGQVVALCGPSGSGKSTIIALVERFYDPQEGSVMLDGVDVRTLN 2024
                  4789999******************************************9977766 PP

>> TIGR02142  modC_ABC: molybdate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  100.5   0.0   3.9e-31   2.4e-29      17     223 ..     502     711 ..     495     738 .. 0.84
   2 !   86.7   0.0   6.1e-27   3.8e-25      17     221 ..    1232    1439 ..    1227    1454 .. 0.86
   3 !   19.5   0.0   1.6e-06    0.0001      18      59 ..    1977    2018 ..    1970    2034 .. 0.90

  Alignments for each domain:
  == domain 1    score: 100.5 bits;  conditional E-value: 3.9e-31
   TIGR02142  17 dlelpgkgvtalFGrsGsGktslirliaGLtrpdegeivldgevlqdsrkkiilppekRrvgyvFqeArLFpHlsvrenLrYGlkraraeerriseek........vielL..giehLleRlpgkLsGGekqRvaigRAlLssPeLLlmDePLaaLDekrkkeilPyLerlsaelkiPilyvsHsldevarladrvvvledGrvkaagkleevlask 223
                 +l++p+  ++al G sGsGk++++ l+     p++g ++ldg+ l+d +        + +++ v qe  LF+  +v en+ YG+    ++e +++e++        ++++L  g +  +    gkLsGG kqRvai+RA++ +Pe+Ll+De  +aLD+   k +   L+++++  k   + ++H l+ +   +d + v++ G +  +g+ ee+ a +
  MMETSP1137-20121227|6677_1 502 NLNIPAGAMCALCGPSGSGKSTIVGLMERFYDPQAGSLHLDGHNLKDLNV----RWLRAQMSLVGQEPVLFSG-TVYENIAYGVLGNATRE-QVEEAAktgdahnfITKVLadGYDTDVGQGGGKLSGGQKQRVAIARAMIKKPEILLLDEATSALDNAAEKAVQTALDKIRETKKRTTITIAHRLTTIR-NSDIIAVVNRGVIVEQGNWEELCAME 711
                 68899999************************************988655....677899***********96.8********96544433.23222111222233999*9555789999*******************************************************************995.59*******************98764 PP

  == domain 2    score: 86.7 bits;  conditional E-value: 6.1e-27
   TIGR02142   17 dlelpgkgvtalFGrsGsGktslirliaGLtrpdegeivldgevlqdsrkkiilppekRrvgyvFqeArLFpHlsvrenLrYG....lkraraee..rri.seekvielLg..iehLleRlpgkLsGGekqRvaigRAlLssPeLLlmDePLaaLDekrkkeilPyLerlsaelkiPilyvsHsldevarladrvvvledGrvkaagkleevla 221 
                  +le+p+  v+al G sGsGk+++i+l+     p+ g i+ dg  ++    k+ +   + ++g v qe  LF   +v en+  G     +r ++ee  + +   e ++ +Lg   +  +    gkLsGG kqRvai+RA +  P + l+De  +aLD+ + + +   L++l a+ k   + ++H l+ + r ad++ v+++G+v   g+ +++la
  MMETSP1137-20121227|6677_1 1232 NLEIPAGYVCALCGPSGSGKSTIINLVQRFYDPSFGSITXDGYEVT----KLRVQWLRSQIGLVGQEPVLFIG-TVLENIAQGkiggATREEVEEaaKAAnAYEFITTVLGdgFDTQVGLGGGKLSGGQKQRVAIARAXVRXPAVXLLDEATSALDTASERVVQKALDSLMAKRKRTTITIAHRLSTI-RNADKIAVVHKGQVVESGTYDKLLA 1439
                  68999999**********************************8654....467788999************86.7888988772222344444331122213567999996448999999******************************************************************98.56*****************999876 PP

  == domain 3    score: 19.5 bits;  conditional E-value: 1.6e-06
   TIGR02142   18 lelpgkgvtalFGrsGsGktslirliaGLtrpdegeivldge 59  
                  l++p+ +v+al G sGsGk+++i l+     p+eg ++ldg 
  MMETSP1137-20121227|6677_1 1977 LHVPSGQVVALCGPSGSGKSTIIALVERFYDPQEGSVMLDGV 2018
                  6788889*********************************96 PP

>> TIGR02211  LolD_lipo_ex: lipoprotein releasing system, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.6   0.0   5.7e-27   3.5e-25      18     219 ..     495     698 ..     481     700 .. 0.87
   2 !   79.8   0.0   7.2e-25   4.5e-23      20     220 ..    1227    1429 ..    1219    1430 .. 0.87
   3 ?    2.6   0.0      0.29        18     127     191 ..    1499    1560 ..    1486    1572 .. 0.76
   4 !   27.9   0.0   5.4e-09   3.3e-07      15      73 ..    1966    2024 ..    1954    2032 .. 0.91

  Alignments for each domain:
  == domain 1    score: 86.6 bits;  conditional E-value: 5.7e-27
   TIGR02211  18 ievlkgvsleiekgelvaivGssGsGkstllhllggldkptsGevllkGkelsklssneraklrnkklGfiyqfhhlladftalenvamPll..iskkskkeaker..akellekv...glekrinkkpselsGGerqrvaiaralvnkPklvladePtgnldkktakkifelllelnkekntallvvthdlelakkldrvlelkdgkl 219
                  ++ +g +l+i +g + a+ G sGsGkst++ l+  + +p +G++ l+G++l+ l+ +    lr  ++ ++ q   +l   t+ en+a  +l   ++++++ea+++  a++++ kv   g +  + +  ++lsGG++qrvaiara+++kP+++l de t+ ld+++ k++ + l +++++k+ + + ++h l+ +++ d    ++ g +
  MMETSP1137-20121227|6677_1 495 FNICNGYNLNIPAGAMCALCGPSGSGKSTIVGLMERFYDPQAGSLHLDGHNLKDLNVR---WLR-AQMSLVGQEP-VLFSGTVYENIAYGVLgnATREQVEEAAKTgdAHNFITKVladGYDTDVGQGGGKLSGGQKQRVAIARAMIKKPEILLLDEATSALDNAAEKAVQTALDKIRETKKRTTITIAHRLTTIRNSDIIAVVNRGVI 698
                 6789999*********************************************999865...566.4689999965.56678********9993333455666655333789999995556778899999****************************************************************9999998888877765 PP

  == domain 2    score: 79.8 bits;  conditional E-value: 7.2e-25
   TIGR02211   20 vlkgvsleiekgelvaivGssGsGkstllhllggldkptsGevllkGkelsklssneraklrnkklGfiyqfhhlladftalenvamPllis..kkskkeaker..akellekv...glekrinkkpselsGGerqrvaiaralvnkPklvladePtgnldkktakkifelllelnkekntallvvthdlelakkldrvlelkdgkla 220 
                  + +g +lei +g + a+ G sGsGkst++ l+  + +p+ G+++ +G e++kl       lr  ++G++ q   l+   t+len+a   + +  +++++ea+++  a+e++  v   g++ ++    ++lsGG++qrvaiara v  P++ l de t+ ld+++ + + + l  l  +++ + + ++h l+ ++++d+   +++g+++
  MMETSP1137-20121227|6677_1 1227 ICNGYNLEIPAGYVCALCGPSGSGKSTIINLVQRFYDPSFGSITXDGYEVTKLRV---QWLR-SQIGLVGQEPVLFI-GTVLENIAQGKIGGatREEVEEAAKAanAYEFITTVlgdGFDTQVGLGGGKLSGGQKQRVAIARAXVRXPAVXLLDEATSALDTASERVVQKALDSLMAKRKRTTITIAHRLSTIRNADKIAVVHKGQVV 1429
                  678999********************************************99964...4566.579*****877766.59******99875411445566655412678888886656888999999************************************************************************999999986 PP

  == domain 3    score: 2.6 bits;  conditional E-value: 0.29
   TIGR02211  127 ekvglekrinkkpselsGGerqrvaiaralvnkPklvladePtgnldkktakkifelllelnkek 191 
                  ekv   kr++++ ++ +   r   a ara+v++ + v++ +  g+  +   +++f +l++lnk +
  MMETSP1137-20121227|6677_1 1499 EKVTTMKRLDEENGDAA-ERRSDKAAARAVVDDDDTVVTKDTNGKKKR--DTSFFGVLKRLNKLQ 1560
                  56666677777766644.34667799*************998887555..557899999999865 PP

  == domain 4    score: 27.9 bits;  conditional E-value: 5.4e-09
   TIGR02211   15 kleievlkgvsleiekgelvaivGssGsGkstllhllggldkptsGevllkGkelskls 73  
                  +l++++ +g  l++ +g++va+ G sGsGkst++ l+  + +p +G+v+l+G ++++l+
  MMETSP1137-20121227|6677_1 1966 RLDYTICNGYTLHVPSGQVVALCGPSGSGKSTIIALVERFYDPQEGSVMLDGVDVRTLN 2024
                  5789999************************************************9987 PP

>> TIGR03258  PhnT: 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.0   0.0   5.7e-25   3.6e-23      25     227 ..     499     707 ..     476     717 .. 0.79
   2 !   83.2   0.0   6.2e-26   3.9e-24       9     227 ..    1210    1437 ..    1202    1446 .. 0.80
   3 !   24.2   0.0   5.3e-08   3.3e-06       5      74 ..    1950    2022 ..    1946    2035 .] 0.87

  Alignments for each domain:
  == domain 1    score: 80.0 bits;  conditional E-value: 5.7e-25
   TIGR03258  25 ddlsleieaGellallGksGsGkttllravaGfvkadGGrllvadrdlthlpp..ykrnlallvqnyalfphlkveenvafGlrar.kqskaliaervadalklvq..lsd.aaa...rlpaqlsGGqqqrvalaralvvrpdvllldeplsaldaqlrasvveelkalhrelpeltvlyvthdrdealvladkillmkeGslialGetral 227
                 +   l+i aG + al G+sGsGk+t++ ++  f  ++ G l + +++l  l     + +++l+ q+  lf   +v+en+a+G+  +  + + + a +  da   +   l+d + +   +   +lsGGq+qrva+ara++ +p++lllde  sald    ++v+  l ++ +     t + ++h    ++  +d i +++ G ++++G+ ++l
  MMETSP1137-20121227|6677_1 499 NGYNLNIPAGAMCALCGPSGSGKSTIVGLMERFYDPQAGSLHLDGHNLKDLNVrwLRAQMSLVGQEPVLFSG-TVYENIAYGVLGNaTREQVEEAAKTGDAHNFITkvLADgYDTdvgQGGGKLSGGQKQRVAIARAMIKKPEILLLDEATSALDNAAEKAVQTALDKIRETKK-RTTITIAHRL-TTIRNSDIIAVVNRGVIVEQGNWEEL 707
                 56789*******************************************98865215678999********75.9********85431333444555556665443211454233311134568*********************************************977655.5666778855.56788999999999999999987666 PP

  == domain 2    score: 83.2 bits;  conditional E-value: 6.2e-26
   TIGR03258    9 vvleslrvaygarv...vlddlsleieaGellallGksGsGkttllravaGfvkadGGrllvadrdlthlpp..ykrnlallvqnyalfphlkveenvafGlr.arkqskaliaervadalklv..qlsdaaarl....paqlsGGqqqrvalaralvvrpdvllldeplsaldaqlrasvveelkalhrelpeltvlyvthdrdealvladkillmkeGslialGetral 227 
                  +v+ ++  ay +r+   + +   lei aG + al G+sGsGk+t++ +v  f  ++ G +   + ++t+l     + +++l+ q+  lf   +v en+a G      + + + a + a+a   +   l+d           +lsGGq+qrva+ara v  p v llde  sald+     v++ l +l  +    t+  ++h r  ++  adki ++++G++++ G+  +l
  MMETSP1137-20121227|6677_1 1210 IVVTDVIFAYPTRAgfpICNGYNLEIPAGYVCALCGPSGSGKSTIINLVQRFYDPSFGSITXDGYEVTKLRVqwLRSQIGLVGQEPVLFIG-TVLENIAQGKIgGATREEVEEAAKAANAYEFIttVLGDGFDTQvglgGGKLSGGQKQRVAIARAXVRXPAVXLLDEATSALDTASERVVQKALDSLMAKRKRTTI-TIAH-RLSTIRNADKIAVVHKGQVVESGTYDKL 1437
                  56666666666554333567889*********************************************98652157789**********75.9******9964134445556666777776644114776443321222479**********************************************999877665.6677.678899*****************98777 PP

  == domain 3    score: 24.2 bits;  conditional E-value: 5.3e-08
   TIGR03258    5 atsGvvleslrvaygar...vvlddlsleieaGellallGksGsGkttllravaGfvkadGGrllvadrdlth 74  
                  +++ ++l+++  ay +r   ++ +  +l++ +G+++al G+sGsGk+t++ +v  f  ++ G +++ + d+  
  MMETSP1137-20121227|6677_1 1950 CAGDIQLQDVVFAYPTRldyTICNGYTLHVPSGQVVALCGPSGSGKSTIIALVERFYDPQEGSVMLDGVDVRT 2022
                  4566999999999988755578999********************************************9965 PP

>> TIGR03005  ectoine_ehuA: ectoine/hydroxyectoine ABC transporter, ATP-binding protein EhuA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.4   0.0   4.1e-25   2.6e-23      12     234 ..     494     707 ..     480     712 .. 0.84
   2 !   82.0   0.0   1.3e-25   8.1e-24      15     239 ..    1227    1442 ..    1221    1452 .. 0.86
   3 !   20.7   0.0     7e-07   4.3e-05      13      62 ..    1969    2018 ..    1954    2025 .. 0.89

  Alignments for each domain:
  == domain 1    score: 80.4 bits;  conditional E-value: 4.1e-25
   TIGR03005  12 eltvldglelevaaGekvaliGpsGsGkstilrilmtletideGsikvegeqlyhmkgrkGklvpadekhlrkvrekiGmvfqsfnlfphktvldnvteapv...lvkGvaraeaekravelldmvGladkad....alpaqlsGGqkqrvaiaralalrpkvllfdevtsaldpelveevlnvlrrlasetdltmllvthemgfarefadrvlffdkGkiveeGkpdei 234
                 ++++ +g +l++ aG   al GpsGsGksti+ ++  +   + Gs++++g++l  ++             +r +r ++ +v q+  lf   tv +n++   +       v+ a+    a +++  v lad  d    +   +lsGGqkqrvaiara+  +p +ll+de+tsald    + v + l ++ + ++ t + ++h++   r+ +d +   ++G ive+G+ +e+
  MMETSP1137-20121227|6677_1 494 HFNICNGYNLNIPAGAMCALCGPSGSGKSTIVGLMERFYDPQAGSLHLDGHNLKDLN-------------VRWLRAQMSLVGQEPVLFS-GTVYENIAYGVLgnaTREQVEEAAKTGDAHNFITKV-LADGYDtdvgQGGGKLSGGQKQRVAIARAMIKKPEILLLDEATSALDNAAEKAVQTALDKIRETKKRTTITIAHRLTTIRN-SDIIAVVNRGVIVEQGNWEEL 707
                 578899***************************999999999999999998877666.............7889999*******99997.589999976655111445566666666677777766.566555111155678***********************************99*************************9997.8***************99987 PP

  == domain 2    score: 82.0 bits;  conditional E-value: 1.3e-25
   TIGR03005   15 vldglelevaaGekvaliGpsGsGkstilrilmtletideGsikvegeqlyhmkgrkGklvpadekhlrkvrekiGmvfqsfnlfphktvldnvteapv...lvkGvaraeaekravelldmv...GladkadalpaqlsGGqkqrvaiaralalrpkvllfdevtsaldpelveevlnvlrrlasetdltmllvthemgfarefadrvlffdkGkiveeGkpdeifrkpk 239 
                  + +g +le+ aG   al GpsGsGksti+ ++  +   + Gsi  +g ++++++             ++ +r +iG+v q+  lf   tvl+n+++  +       v+ a+  + a e++  v   G+  +      +lsGGqkqrvaiara    p v l+de+tsald      v + l  l ++++ t + ++h++   r+ ad++   +kG++ve G  d+++   +
  MMETSP1137-20121227|6677_1 1227 ICNGYNLEIPAGYVCALCGPSGSGKSTIINLVQRFYDPSFGSITXDGYEVTKLR-------------VQWLRSQIGLVGQEPVLFI-GTVLENIAQGKIggaTREEVEEAAKAANAYEFITTVlgdGFDTQVGLGGGKLSGGQKQRVAIARAXVRXPAVXLLDEATSALDTASERVVQKALDSLMAKRKRTTITIAHRLSTIRN-ADKIAVVHKGQVVESGTYDKLLAIGQ 1442
                  67899******************************999******9987777666.............7889**************7.69*****99877221334566666667777777766444455555556789*********************************99999999*********************9997.9****************999987655 PP

  == domain 3    score: 20.7 bits;  conditional E-value: 7e-07
   TIGR03005   13 ltvldglelevaaGekvaliGpsGsGkstilrilmtletideGsikvege 62  
                  +t+ +g  l+v +G+ val GpsGsGksti+ ++  +   +eGs+ ++g 
  MMETSP1137-20121227|6677_1 1969 YTICNGYTLHVPSGQVVALCGPSGSGKSTIIALVERFYDPQEGSVMLDGV 2018
                  68999*****************************999999****999985 PP

>> TIGR02769  nickel_nikE: nickel import ATP-binding protein NikE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.7   0.0   2.1e-25   1.3e-23      25     250 ..     496     719 ..     480     725 .. 0.85
   2 !   77.4   0.0     4e-24   2.5e-22      25     235 ..    1226    1434 ..    1208    1444 .. 0.84
   3 !   25.3   0.0   3.2e-08     2e-06      25      81 ..    1970    2026 ..    1959    2032 .. 0.90

  Alignments for each domain:
  == domain 1    score: 81.7 bits;  conditional E-value: 2.1e-25
   TIGR02769  25 avldnvslsleeGetvallGrsGaGkstlarlllGlekPakGevsfrGqdlakldrkqrkafrrdvqlvfqdsi..savnprksvreiigePlrhltsldeserkariaellelv..elrsevldklPrqlsGGqlqriniaralavePklivldeavsnldlvlqasilellkklkqefGlaylfithdlrlvqkfaqrvlvldeGqiveeikvaellsfkhpagrllq 250
                 ++ ++ +l++ +G   al G sG+Gkst+  l+  +  P+ G+++  G++l+ l+    + +r ++ lv q+ +  s     + +  ++g+  r  ++++e+++   +++++ +v  +  + ++ +   +lsGGq qr++iara+  +P++++ldea s ld     ++   l k+++    + + i+h l  +++ ++ ++v+++G ive+ +  el +++    r+l 
  MMETSP1137-20121227|6677_1 496 NICNGYNLNIPAGAMCALCGPSGSGKSTIVGLMERFYDPQAGSLHLDGHNLKDLN---VRWLRAQMSLVGQEPVlfSGTVYENIAYGVLGNATR--EQVEEAAKTGDAHNFITKVlaDGYDTDVGQGGGKLSGGQKQRVAIARAMIKKPEILLLDEATSALDNAAEKAVQTALDKIRETKKRTTITIAHRLTTIRN-SDIIAVVNRGVIVEQGNWEELCAMEGGLFRKLA 719
                 6778899*******************************************99997...57788899****996422333334444455666555..578899999999999988833344667788999**************************************************************99865.9**************999999888877777765 PP

  == domain 2    score: 77.4 bits;  conditional E-value: 4e-24
   TIGR02769   25 avldnvslsleeGetvallGrsGaGkstlarlllGlekPakGevsfrGqdlakldrkqrkafrrdvqlvfqdsisavnp..rksvreiigePlrhltsldeserkariaellelvelr..sevldklPrqlsGGqlqriniaralavePklivldeavsnldlvlqasilellkklkqefGlaylfithdlrlvqkfaqrvlvldeGqiveeikv 235 
                  ++ ++ +l++ +G   al G sG+Gkst+  l+  +  P+ G+++  G +++kl     + +r ++ lv q+ +  + +   + ++  ig   r  ++++e+++ a + e++ +v  +  + ++     +lsGGq qr++iara    P + +ldea s ld     ++ + l  l ++   + + i+h l+ +++ a++++v+++Gq+ve  + 
  MMETSP1137-20121227|6677_1 1226 PICNGYNLEIPAGYVCALCGPSGSGKSTIINLVQRFYDPSFGSITXDGYEVTKLRV---QWLRSQIGLVGQEPVLFIGTvlENIAQGKIGGATR--EEVEEAAKAANAYEFITTVLGDgfDTQVGLGGGKLSGGQKQRVAIARAXVRXPAVXLLDEATSALDTASERVVQKALDSLMAKRKRTTITIAHRLSTIRN-ADKIAVVHKGQVVESGTY 1434
                  6778899***********************************************75...578899******98654433112333444555544..678999999999999999844411455666789***************************************************************9975.9*************8655 PP

  == domain 3    score: 25.3 bits;  conditional E-value: 3.2e-08
   TIGR02769   25 avldnvslsleeGetvallGrsGaGkstlarlllGlekPakGevsfrGqdlakldrk 81  
                  ++ ++  l++ +G+ val G sG+Gkst+  l+  +  P++G+v+  G+d+  l+ +
  MMETSP1137-20121227|6677_1 1970 TICNGYTLHVPSGQVVALCGPSGSGKSTIIALVERFYDPQEGSVMLDGVDVRTLNVS 2026
                  5667788999******************************************99876 PP

>> TIGR01166  cbiO: cobalt ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.5   0.0   2.2e-26   1.3e-24       7     179 ..     497     672 ..     491     682 .. 0.83
   2 !   70.2   0.0   5.3e-22   3.3e-20       8     179 ..    1228    1402 ..    1222    1412 .. 0.84
   3 !   26.8   0.0   1.1e-08   6.6e-07       8      57 ..    1972    2021 ..    1967    2035 .] 0.84

  Alignments for each domain:
  == domain 1    score: 84.5 bits;  conditional E-value: 2.2e-26
   TIGR01166   7 vlkglnlavergevlallGanGaGkstlllhlnGllrPksGkvlldGeeldysrkgllelrkkvalvlqdpddqlfaadvdedvafgpl.nlGlseaeverrvrea...laavdisgleerpth...llsgGekkrvaiagavalrpdvllldePtagldpaGaeqlleilrklreeGkt 179
                 + +g nl++  g + al G+ G+Gkst++  ++    P++G + ldG++l+    +++ lr +++lv q+p   lf+ +v e++a+g l n   ++ e  ++  +a   +++v ++g++    +   +lsgG+k+rvaia a++ +p++lllde t+ ld a ++ + ++l+k+re  k 
  MMETSP1137-20121227|6677_1 497 ICNGYNLNIPAGAMCALCGPSGSGKSTIVGLMERFYDPQAGSLHLDGHNLK--DLNVRWLRAQMSLVGQEP--VLFSGTVYENIAYGVLgNATREQVEEAAKTGDAhnfITKVLADGYDTDVGQgggKLSGGQKQRVAIARAMIKKPEILLLDEATSALDNAAEKAVQTALDKIRETKKR 672
                 66899******************************************9986..345667788888888887..7*************9834444444555555555333789999***9866543338**********************************************997653 PP

  == domain 2    score: 70.2 bits;  conditional E-value: 5.3e-22
   TIGR01166    8 lkglnlavergevlallGanGaGkstlllhlnGllrPksGkvlldGeeldysrkgllelrkkvalvlqdpddqlfaadvdedvafgplnlGlseaeverrvr..ea...laavdisgleerpt...hllsgGekkrvaiagavalrpdvllldePtagldpaGaeqlleilrklreeGkt 179 
                   +g nl++  g v al G+ G+Gkst+++ ++    P  G ++ dG e+      +  lr +++lv q+p   lf  +v e++a g +  G + +eve+  +  +a   +++v  +g++ +      +lsgG+k+rvaia a +  p v llde t+ ld+a ++ + ++l+ l ++ k 
  MMETSP1137-20121227|6677_1 1228 CNGYNLEIPAGYVCALCGPSGSGKSTIINLVQRFYDPSFGSITXDGYEVTK--LRVQWLRSQIGLVGQEP--VLFIGTVLENIAQGKIG-GATREEVEEAAKaaNAyefITTVLGDGFDTQVGlggGKLSGGQKQRVAIARAXVRXPAVXLLDEATSALDTASERVVQKALDSLMAKRKR 1402
                  5789*******************************************9975..5567789********99..6*************986.67777887655411442224566668999997522269*********************************************9987543 PP

  == domain 3    score: 26.8 bits;  conditional E-value: 1.1e-08
   TIGR01166    8 lkglnlavergevlallGanGaGkstlllhlnGllrPksGkvlldGeeld 57  
                   +g  l+v  g+v+al G+ G+Gkst++  ++    P++G v+ldG ++ 
  MMETSP1137-20121227|6677_1 1972 CNGYTLHVPSGQVVALCGPSGSGKSTIIALVERFYDPQEGSVMLDGVDVR 2021
                  577889****************************************8775 PP

>> TIGR03410  urea_trans_UrtE: urea ABC transporter, ATP-binding protein UrtE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.7   0.0   2.1e-26   1.3e-24      14     219 ..     496     707 ..     480     712 .. 0.81
   2 !   79.1   0.0   1.1e-24     7e-23      15     218 ..    1227    1436 ..    1212    1440 .. 0.84
   3 !   17.7   0.0   6.5e-06   0.00041      14      69 ..    1970    2025 ..    1954    2035 .] 0.85

  Alignments for each domain:
  == domain 1    score: 84.7 bits;  conditional E-value: 2.1e-26
   TIGR03410  14 evlrdvslevekgevvavlGrngvGkttllkalvgllkvksGeielegeditklkpeervkaGiayvpqGreifpkltveenlelglealkkk.....ekkipeeiyelFPvlkemlk....RrgGdLsGGqqqqlaiaRaLvtePklllLDePteGiqPsiikeiekvikelakekdlaillveqvldfaleladrylvlerGevvaegekeel 219
                 ++ ++ +l++++g + a+ G  g Gk+t++  +   ++ ++G+++l+g+++++l+  +  +a ++ v q   +f+  tv en+  g+   +++     + k  +    +  vl +  +      gG+LsGGq+q +aiaRa++++P++llLDe t  +  +  k +++++++++++k+ + + + + l   ++ +d ++v++rG +v++g+ eel
  MMETSP1137-20121227|6677_1 496 NICNGYNLNIPAGAMCALCGPSGSGKSTIVGLMERFYDPQAGSLHLDGHNLKDLNV-RWLRAQMSLVGQEPVLFSG-TVYENIAYGVLGNATReqveeAAKTGDAHNFITKVLADGYDtdvgQGGGKLSGGQKQRVAIARAMIKKPEILLLDEATSALDNAAEKAVQTALDKIRETKKRTTITIAHRLTTIRN-SDIIAVVNRGVIVEQGNWEEL 707
                 688999**********************************************9986.5678899*****9888876.9******998665544223322222222223345666543312226799****************************************************999999999998777.9**************998875 PP

  == domain 2    score: 79.1 bits;  conditional E-value: 1.1e-24
   TIGR03410   15 vlrdvslevekgevvavlGrngvGkttllkalvgllkvksGeielegeditklkpeervkaGiayvpqGreifpkltveenlelgl...ealkkk.ekkipeeiyelF.PvlkemlkRr....gGdLsGGqqqqlaiaRaLvtePklllLDePteGiqPsiikeiekvikelakekdlaillveqvldfaleladrylvlerGevvaegekee 218 
                  + ++ +le+++g v a+ G  g Gk+t++  +   ++ + G+i+ +g ++tkl+ +   ++ i+ v q   +f   tv en+  g    +++++  e +  +++ye+   vl +  + +    gG+LsGGq+q +aiaRa v  P + lLDe t  +  +  + ++k++++l ++++ + + + + l+  ++ ad+++v+++G+vv++g+ ++
  MMETSP1137-20121227|6677_1 1227 ICNGYNLEIPAGYVCALCGPSGSGKSTIINLVQRFYDPSFGSITXDGYEVTKLRVQ-WLRSQIGLVGQEPVLFI-GTVLENIAQGKiggATREEVeEAAKAANAYEFItTVLGDGFDTQvglgGGKLSGGQKQRVAIARAXVRXPAVXLLDEATSALDTASERVVQKALDSLMAKRKRTTITIAHRLSTIRN-ADKIAVVHKGQVVESGTYDK 1436
                  667889**********************************************9975.57899****99877775.59*****8764111333333355556778887624666544433233389**************************************************9999999999**98887.***************98776 PP

  == domain 3    score: 17.7 bits;  conditional E-value: 6.5e-06
   TIGR03410   14 evlrdvslevekgevvavlGrngvGkttllkalvgllkvksGeielegeditklkp 69  
                  ++ ++ +l+v++g+vva+ G  g Gk+t++  +   ++ ++G+++l+g d+++l+ 
  MMETSP1137-20121227|6677_1 1970 TICNGYTLHVPSGQVVALCGPSGSGKSTIIALVERFYDPQEGSVMLDGVDVRTLNV 2025
                  6888999********************************************98765 PP

>> TIGR02770  nickel_nikD: nickel import ATP-binding protein NikD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.8   0.0   4.5e-23   2.8e-21       4     213 ..     500     707 ..     497     719 .. 0.82
   2 !   79.9   0.0   6.1e-25   3.8e-23       4     214 ..    1230    1438 ..    1227    1450 .. 0.85
   3 !   17.0   0.0     1e-05   0.00064       6      59 ..    1976    2025 ..    1971    2035 .] 0.81

  Alignments for each domain:
  == domain 1    score: 73.8 bits;  conditional E-value: 4.5e-23
   TIGR02770   4 dvnlslkrgkvlalvGesGsGksltalailglldkeltktsGeilldgkelaalalr..greialilqnPrsafnPll.tikeqlletlkaleklskqake.livealeavgLeeaeevlkkypfelsGGmlqRvmialallleaplliaDePttdlDvvvqaevLklleelrekrglgillithDlgvvaeladevavmekGkivergtvkel 213
                 + nl++  g ++al G sGsGks+    i+gl++      +G++ ldg++l++l++r    +++l+ q+P+     ++ +i+  +l     +e++++ ak   + + +++v  +  ++ + +   +lsGG  qRv ia a++ ++ +l+ De t++lD ++++ v   l+++re++  + + i+h l+ + +  d +av+++G ive+g+ +el
  MMETSP1137-20121227|6677_1 500 GYNLNIPAGAMCALCGPSGSGKST----IVGLMERFYDPQAGSLHLDGHNLKDLNVRwlRAQMSLVGQEPVLFSGTVYeNIAYGVLGNAT-REQVEEAAKTgDAHNFITKVLADGYDTDVGQGGGKLSGGQKQRVAIARAMIKKPEILLLDEATSALDNAAEKAVQTALDKIRETKKRTTITIAHRLTTI-RNSDIIAVVNRGVIVEQGNWEEL 707
                 67999*****************96....5677776677889************977733578999*****97666665255555554443.3444444443045555566655556677889999***************************************************************99.568**************998886 PP

  == domain 2    score: 79.9 bits;  conditional E-value: 6.1e-25
   TIGR02770    4 dvnlslkrgkvlalvGesGsGksltalailglldkeltktsGeilldgkelaal..alrgreialilqnPrsafnPll.tikeqlletlkaleklskqak.elivealeavgLeeaeevlkkypfelsGGmlqRvmialallleaplliaDePttdlDvvvqaevLklleelrekrglgillithDlgvvaeladevavmekGkivergtvkelf 214 
                  + nl++  g v+al G sGsGks+    ++ + d     + G+i+ dg e+++l  +    +i+l+ q+P+  +  +l +i++  +     +e++++ ak + + e ++ v  +  ++ + +   +lsGG  qRv ia a +  +++ + De t++lD +++  v k l++l+ kr  + + i+h l+ + + ad++av++kG++ve+gt ++l+
  MMETSP1137-20121227|6677_1 1230 GYNLEIPAGYVCALCGPSGSGKSTIINLVQRFYD----PSFGSITXDGYEVTKLrvQWLRSQIGLVGQEPVLFIGTVLeNIAQGKIGGAT-REEVEEAAKaANAYEFITTVLGDGFDTQVGLGGGKLSGGQKQRVAIARAXVRXPAVXLLDEATSALDTASERVVQKALDSLMAKRKRTTITIAHRLSTI-RNADKIAVVHKGQVVESGTYDKLL 1438
                  67999******************99988888888....578***********9944445789*********9998766166666555544.444444444045677777776677788899999****************************************************************99.67****************999886 PP

  == domain 3    score: 17.0 bits;  conditional E-value: 1e-05
   TIGR02770    6 nlslkrgkvlalvGesGsGksltalailglldkeltktsGeilldgkelaalal 59  
                   l++  g+v+al G sGsGks+  + +  + d      +G+++ldg ++ +l++
  MMETSP1137-20121227|6677_1 1976 TLHVPSGQVVALCGPSGSGKSTIIALVERFYD----PQEGSVMLDGVDVRTLNV 2025
                  688999***************98887777877....568*******99988743 PP

>> TIGR01184  ntrCD: nitrate ABC transporter, ATP-binding proteins C and D
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.5   0.0   9.4e-25   5.8e-23       3     184 ..     500     689 ..     498     707 .. 0.77
   2 !   67.2   0.0   5.4e-21   3.4e-19       3     192 ..    1230    1427 ..    1228    1437 .. 0.79
   3 !   22.7   0.0   2.1e-07   1.3e-05       5      50 ..    1976    2021 ..    1972    2025 .. 0.93

  Alignments for each domain:
  == domain 1    score: 79.5 bits;  conditional E-value: 9.4e-25
   TIGR01184   3 dvdleikkgefislighsgcgkstllnliaglekptsgavilegkeitepg....pdrmvvfqnysllpwltvrenialav..davlrdlskserreiveehielv...glreaadkrpeqlsggmkqrvaiaralsirpklllldepfgaldaltreelqekllkiveearvtvlmvthdvdealllsdr 184
                 + +l+i  g + +l g sg gkst++ l+  +  p +g+++l+g+++++        +m +  +  +l   tv+enia  v  +a +++++++ +    ++ i  v   g  +   +  ++lsgg kqrvaiara+  +p++lllde   ald  + + +q  l ki e ++ t++ ++h +  ++  sd 
  MMETSP1137-20121227|6677_1 500 GYNLNIPAGAMCALCGPSGSGKSTIVGLMERFYDPQAGSLHLDGHNLKDLNvrwlRAQMSLVGQEPVLFSGTVYENIAYGVlgNATREQVEEAAKTGDAHNFITKVladGYDTDVGQGGGKLSGGQKQRVAIARAMIKKPEILLLDEATSALDNAAEKAVQTALDKIRETKKRTTITIAHRLT-TIRNSDI 689
                 5699*****************************************99976522224567766666777789*******9984433333333333333333333333112555555667789***********************************************************875.3444555 PP

  == domain 2    score: 67.2 bits;  conditional E-value: 5.4e-21
   TIGR01184    3 dvdleikkgefislighsgcgkstllnliaglekptsgavilegkeitepgpdrm....vvfqnysllpwltvreniala.v.davlrdlskserreiveehielv...glreaadkrpeqlsggmkqrvaiaralsirpklllldepfgaldaltreelqekllkiveearvtvlmvthdvdealllsdrvvmltngp 192 
                  + +lei  g   +l g sg gkst++nl+  +  p+ g+++ +g e+t+   + +     +  +  +l   tv enia   +  a +++++++ + +   e i  v   g+ +      ++lsgg kqrvaiara    p + llde   ald+ +   +q+ l  ++ +++ t++ ++h +  ++  +d++ ++ +g 
  MMETSP1137-20121227|6677_1 1230 GYNLEIPAGYVCALCGPSGSGKSTIINLVQRFYDPSFGSITXDGYEVTKLRVQWLrsqiGLVGQEPVLFIGTVLENIAQGkIgGATREEVEEAAKAANAYEFITTVlgdGFDTQVGLGGGKLSGGQKQRVAIARAXVRXPAVXLLDEATSALDTASERVVQKALDSLMAKRKRTTITIAHRLS-TIRNADKIAVVHKGQ 1427
                  56899*******************************************98765331122344455666789******97523134445555555556666666655322344444455689***********************************************************986.567788888877775 PP

  == domain 3    score: 22.7 bits;  conditional E-value: 2.1e-07
   TIGR01184    5 dleikkgefislighsgcgkstllnliaglekptsgavilegkeit 50  
                   l++  g+ ++l g sg gkst++ l+  +  p +g+v+l+g ++ 
  MMETSP1137-20121227|6677_1 1976 TLHVPSGQVVALCGPSGSGKSTIIALVERFYDPQEGSVMLDGVDVR 2021
                  68999*************************************9885 PP

>> TIGR01978  sufC: FeS assembly ATPase SufC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.2   0.0   5.9e-22   3.7e-20      14     230 ..     496     705 ..     485     716 .. 0.83
   2 !   64.6   0.0     3e-20   1.9e-18      14     231 ..    1226    1436 ..    1221    1445 .. 0.82
   3 !   22.1   0.0   2.9e-07   1.8e-05      13      71 ..    1969    2025 ..    1961    2034 .. 0.88

  Alignments for each domain:
  == domain 1    score: 70.2 bits;  conditional E-value: 5.9e-22
   TIGR01978  14 eiLkglnlevkkGevhaimGpnGsGkstLskvlaghekyevtsGeiklkgqdlleleveeraraGlflafqapeeipGvsnkeflrsalnavrkargeeeldllefekllkeklelleldeelleRslneGfsGGekkrneilqlallePklaiLDeiDsGlDvDalkivaegvnklree.ekalliithyerllelikPdvvhvlldGrivksGdve 230
                 +i +g nl++ +G++ a+ Gp GsGkst++  +  ++ y  ++G+++l+g++l +l+v    ra + l  q p+  +G   +++   +l  +++++ ee+ ++ + ++ +++ l+   +d+++ +       sGG k+r  i + ++ +P++ +LDe+ s lD  a k+v + ++k+re+ +++++ i+h  rl    + d + v+ +G iv++G+ e
  MMETSP1137-20121227|6677_1 496 NICNGYNLNIPAGAMCALCGPSGSGKSTIVGLM--ERFYDPQAGSLHLDGHNLKDLNVRW-LRAQMSLVGQEPVLFSGTVYENIAYGVLGNATREQVEEAAKTGDAHNFITKVLAD-GYDTDVGQG--GGKLSGGQKQRVAIARAMIKKPEILLLDEATSALDNAAEKAVQTALDKIRETkKRTTITIAH--RLTTIRNSDIIAVVNRGVIVEQGNWE 705
                 7899*************************9876..45688899**************975.57778999*********99999998888666656667766776666666555443.344433332..2348**********************************************995666777777..78888899***************976 PP

  == domain 2    score: 64.6 bits;  conditional E-value: 3e-20
   TIGR01978   14 eiLkglnlevkkGevhaimGpnGsGkstLskvlaghekyevtsGeiklkgqdllelevee.raraGlflafqapeeipGvsnkeflrsalnavrkargeeeldllefekllkeklelleldeelleRslneG.fsGGekkrneilqlallePklaiLDeiDsGlDvDalkivaegvnklree.ekalliithyerllelikPdvvhvlldGrivksGdvel 231 
                  +i +g nle+ +G v a+ Gp GsGkst+ + +   + y  + G+i+ +g ++++l+v+  r++ G  l  q p+   G   +++ +  +  +++++ ee+ ++++  + +++ l     d   ++  l  G  sGG k+r  i +  +  P + +LDe+ s lD  + ++v + +++l  + +++++ i+h  rl    + d++ v+++G++v+sG  + 
  MMETSP1137-20121227|6677_1 1226 PICNGYNLEIPAGYVCALCGPSGSGKSTIINLVQ--RFYDPSFGSITXDGYEVTKLRVQWlRSQIG--LVGQEPVLFIGTVLENIAQGKIGGATREEVEEAAKAANAYEFITTVL----GDGFDTQVGLGGGkLSGGQKQRVAIARAXVRXPAVXLLDEATSALDTASERVVQKALDSLMAKrKRTTITIAH--RLSTIRNADKIAVVHKGQVVESGTYDK 1436
                  68899*************************9985..5678889***************85255555..679*************9999998777666666655555544444433....333334445555558*******************************************998875788888888..66677789***************8765 PP

  == domain 3    score: 22.1 bits;  conditional E-value: 2.9e-07
   TIGR01978   13 keiLkglnlevkkGevhaimGpnGsGkstLskvlaghekyevtsGeiklkgqdllelev 71  
                   +i +g +l+v +G+v+a+ Gp GsGkst+ + +  ++ y  ++G+++l+g d+  l+v
  MMETSP1137-20121227|6677_1 1969 YTICNGYTLHVPSGQVVALCGPSGSGKSTIIALV--ERFYDPQEGSVMLDGVDVRTLNV 2025
                  5789999**********************99877..5678889***********99987 PP

>> TIGR02324  CP_lyasePhnL: phosphonate C-P lyase system protein PhnL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.5   0.0   4.5e-07   2.8e-05      21      67 ..     495     541 ..     486     562 .. 0.90
   2 !   39.7   0.1   1.3e-12   7.9e-11     150     208 ..     621     680 ..     617     694 .. 0.83
   3 !   58.7   0.0   1.9e-18   1.2e-16      22     209 ..    1226    1411 ..    1219    1425 .. 0.76
   4 !   25.9   0.0   2.1e-08   1.3e-06      22      67 ..    1970    2015 ..    1963    2028 .. 0.91

  Alignments for each domain:
  == domain 1    score: 21.5 bits;  conditional E-value: 4.5e-07
   TIGR02324  21 lpvlkevsleveaGelvalsGksGaGkstllkslyanYlpesgrilv 67 
                  ++++  +l++ aG + al G+sG+Gkst++  + + Y p++g++ +
  MMETSP1137-20121227|6677_1 495 FNICNGYNLNIPAGAMCALCGPSGSGKSTIVGLMERFYDPQAGSLHL 541
                 57789999***********************************9876 PP

  == domain 2    score: 39.7 bits;  conditional E-value: 1.3e-12
   TIGR02324 150 fsGGekqRvniaraliadrPiLLLdePtasLdaanrkvvvelikeaka.rgaaligifhd 208
                  sGG kqRv iara+i++  iLLLde t++Ld+a  k+v   ++++++ +  + i+i h 
  MMETSP1137-20121227|6677_1 621 LSGGQKQRVAIARAMIKKPEILLLDEATSALDNAAEKAVQTALDKIREtKKRTTITIAHR 680
                 69***************888*****************99988888765145677888885 PP

  == domain 3    score: 58.7 bits;  conditional E-value: 1.9e-18
   TIGR02324   22 pvlkevsleveaGelvalsGksGaGkstllkslyanYlpesgrilvrhegeivdlvkaserevlevRrktigyvsqfLrviPRvsalevvaepllelGvereearakakellarlniperL.......WslaPatfsGGekqRvniaraliadrPiLLLdePtasLdaanrkvvvelikeakar.gaaligifhde 209 
                  p+++  +le+ aG + al G+sG+Gkst++  + + Y p+ g+i+           ++++ +v  +R ++ig v q   v+   + le +a+  +  G++ree +++ak++ a   i+  L         l     sGG kqRv iara +    + LLde t++Ld+a  +vv + ++++ a+   + i+i h  
  MMETSP1137-20121227|6677_1 1226 PICNGYNLEIPAGYVCALCGPSGSGKSTIINLVQRFYDPSFGSITXDGY-------EVTKLRVQWLR-SQIGLVGQEP-VLFIGTVLENIAQGKIG-GATREEVEEAAKAANAYEFITTVLgdgfdtqVGLGGGKLSGGQKQRVAIARAXVRXPAVXLLDEATSALDTASERVVQKALDSLMAKrKRTTITIAHRL 1411
                  7899999************************************987663.......33456677777.8899999876.77777788888887776.77777766666555444444444411111114578899*****************88899*******************99987654146778999864 PP

  == domain 4    score: 25.9 bits;  conditional E-value: 2.1e-08
   TIGR02324   22 pvlkevsleveaGelvalsGksGaGkstllkslyanYlpesgrilv 67  
                   +++  +l+v +G++val G+sG+Gkst++  + + Y p+ g++++
  MMETSP1137-20121227|6677_1 1970 TICNGYTLHVPSGQVVALCGPSGSGKSTIIALVERFYDPQEGSVML 2015
                  5688899***********************************9986 PP

>> TIGR00955  3a01204: pigment precursor permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.3   0.0   1.4e-20   8.7e-19      46     255 ..     503     708 ..     473     737 .. 0.82
   2 !   64.4   0.0   2.7e-20   1.7e-18      49     254 ..    1236    1437 ..    1227    1442 .. 0.79
   3 !   16.2   0.0   1.1e-05   0.00067      39      93 ..    1970    2021 ..    1953    2031 .. 0.78

  Alignments for each domain:
  == domain 1    score: 65.3 bits;  conditional E-value: 1.4e-20
   TIGR00955  46 GvaksGellAvlGsSGaGKtTLlnalafrsekglkvsgdvllnGekv...eakemraisayvqqddlfiptltvrehLmfsahlrlkrrltkk.ekrerveevleelgLrkcadtrigvpgrvkglSgGerkRlalaselltdPilLfcDEPTsGLDsfsaasvvkvLkklaq.kgktviltiHQPsselfelfdkiillaeGrvvylGspeeav 255
                   +  G + A+ G+SG+GK+T++  +           g+  l+G+++   + + +ra  + v q+ +++   tv+e++ +       r+  ++  k    ++ ++++ L +  dt +g+ g    lSgG+++R+a+a  ++++P +L++DE Ts LD +  + v  +L k+ + k +t i+  H  +    ++ d i ++++G +v +G+ ee++
  MMETSP1137-20121227|6677_1 503 LNIPAGAMCALCGPSGSGKSTIVGLMERFYDP-QA--GSLHLDGHNLkdlNVRWLRAQMSLVGQEPVLFS-GTVYENIAYGVLGNATREQVEEaAKTGDAHNFITKV-LADGYDTDVGQGGG--KLSGGQKQRVAIARAMIKKPEILLLDEATSALDNAAEKAVQTALDKIREtKKRTTITIAHRLT--TIRNSDIIAVVNRGVIVEQGNWEELC 708
                 56778****************99866544333.33..468999988611156778899999999998875.59*******998888777666669**********98.9*********8885..8**********************************99999999****8625667777778754..45777888888888888888877776 PP

  == domain 2    score: 64.4 bits;  conditional E-value: 2.7e-20
   TIGR00955   49 ksGellAvlGsSGaGKtTLlnalafrsekglkvsgdvllnGekvea...kemraisayvqqdd.lfiptltvrehLmfsahlr.lkrrltkkekrerveevleelgLrkcadtrigvpgrvkglSgGerkRlalaselltdPilLfcDEPTsGLDsfsaasvvkvLkklaqkg.ktviltiHQPsselfelfdkiillaeGrvvylGspeea 254 
                    G + A+ G+SG+GK+T++n +           g+++ +G +v++   + +r   + v q+  lfi+  tv e++         ++++ +  k +   e ++++ L +  dt +g  g    lSgG+++R+a+a   +  P + ++DE Ts LD +s   v k+L +l  k+ +t i+  H  s +  ++ dki ++ +G+vv +G+ +++
  MMETSP1137-20121227|6677_1 1236 PAGYVCALCGPSGSGKSTIINLVQRFYDPSF---GSITXDGYEVTKlrvQWLRSQIGLVGQEPvLFIG--TVLENIAQGKIGGaTREEVEEAAKAANAYEFITTV-LGDGFDTQVGLGGG--KLSGGQKQRVAIARAXVRXPAVXLLDEATSALDTASERVVQKALDSLMAKRkRTTITIAHRLS-T-IRNADKIAVVHKGQVVESGTYDKL 1437
                  578999***************8876655544...46999**988872225567778888777626676..67777654333331334455669999999999876.9*********9996..8************************************9999***9986655056666667655.4.5889************99998776 PP

  == domain 3    score: 16.2 bits;  conditional E-value: 1.1e-05
   TIGR00955   39 ellknvsGvaksGellAvlGsSGaGKtTLlnalafrsekglkvsgdvllnGekve 93  
                  ++ ++ + ++ sG+++A+ G+SG+GK+T+++ +  r     +  g+v+l+G  v 
  MMETSP1137-20121227|6677_1 1970 TICNGYTLHVPSGQVVALCGPSGSGKSTIIALVE-RFYDPQE--GSVMLDGVDVR 2021
                  56677778899*****************997664.4433333..47889887765 PP

>> TIGR03411  urea_trans_UrtD: urea ABC transporter, ATP-binding protein UrtD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.9   0.0   2.9e-20   1.8e-18      15     229 ..     495     707 ..     480     711 .. 0.90
   2 !   64.2   0.0   4.6e-20   2.9e-18      14     229 ..    1224    1437 ..    1212    1441 .. 0.85
   3 !   15.9   0.0   2.8e-05    0.0017      19      70 ..    1973    2024 ..    1963    2033 .. 0.90

  Alignments for each domain:
  == domain 1    score: 64.9 bits;  conditional E-value: 2.9e-20
   TIGR03411  15 fkalndlslsveegelrviiGpnGaGkttllDvitGktrpdeGsvlfkgkdltklkeaeiarlGigRkfqkpsvfeeltvlenlelalkadksvlallfarlskeekerieevleligLeekadkkaglLshGqkqwLeigmllvqepkllllDePvaGmtdeetektaellkela..kersvvvvehDmefvrelaekvtvlheGkvlaeGsldev 229
                 f+  n  +l++ +g + ++ Gp G+Gk+t++ ++     p++Gs+ ++g++l+ l+     r+ ++   q+p +f+  tv en+   +  + +  ++  a  + ++++ i++vl+  g ++ + +  g+Ls Gqkq++ i+  ++++p++lllDe ++ + ++ ++ +   l +++  k+r+ + + h ++ +r+ ++ ++v+++G ++ +G+ +e+
  MMETSP1137-20121227|6677_1 495 FNICNGYNLNIPAGAMCALCGPSGSGKSTIVGLMERFYDPQAGSLHLDGHNLKDLNVR-WLRAQMSLVGQEPVLFS-GTVYENIAYGVLGNATREQVEEAAKTGDAHNFITKVLAD-GYDTDVGQGGGKLSGGQKQRVAIARAMIKKPEILLLDEATSALDNAAEKAVQTALDKIRetKKRTTITIAHRLTTIRN-SDIIAVVNRGVIVEQGNWEEL 707
                 7788999*********************************************999865.5577777788***9996.69*******999998888888888888999999999986.7899999**************************************99999999999996226789***********98.5689************99876 PP

  == domain 2    score: 64.2 bits;  conditional E-value: 4.6e-20
   TIGR03411   14 gfkalndlslsveegelrviiGpnGaGkttllDvitGktrpdeGsvlfkgkdltklkeaeiarlGigRkfqkpsvfeeltvlenlelalkadksvlallfarlskeekerieevleligLeekadkkaglLshGqkqwLeigmllvqepkllllDePvaGmtdeetektaellkel..akersvvvvehDmefvrelaekvtvlheGkvlaeGsldev 229 
                  gf   n  +l++ +g + ++ Gp G+Gk+t+++++     p+ Gs++ +g ++tkl+ +   r+ ig   q+p +f   tvlen+         + + + + ++++++ +  +++   g ++++    g+Ls Gqkq++ i+   v+ p++ llDe ++ + ++ ++ + + l +l  +++r+ + + h ++ +r+ a+k++v+h+G+v+  G+ d++
  MMETSP1137-20121227|6677_1 1224 GFPICNGYNLEIPAGYVCALCGPSGSGKSTIINLVQRFYDPSFGSITXDGYEVTKLRVQ-WLRSQIGLVGQEPVLFI-GTVLENIAQGKIGGA-TREEVEEAAKAANAYEFITTVLGDGFDTQVGLGGGKLSGGQKQRVAIARAXVRXPAVXLLDEATSALDTASERVVQKALDSLmaKRKRTTITIAHRLSTIRN-ADKIAVVHKGQVVESGTYDKL 1437
                  78889999***********************************************9875.67899********9997.59****986654444.444444444544444444444456899999999**********************************99888888888888733457899**********98.679**************9986 PP

  == domain 3    score: 15.9 bits;  conditional E-value: 2.8e-05
   TIGR03411   19 ndlslsveegelrviiGpnGaGkttllDvitGktrpdeGsvlfkgkdltklk 70  
                  n  +l+v +g++ ++ Gp G+Gk+t++ ++     p+eGsv+++g d++ l+
  MMETSP1137-20121227|6677_1 1973 NGYTLHVPSGQVVALCGPSGSGKSTIIALVERFYDPQEGSVMLDGVDVRTLN 2024
                  677899***************************************9998776 PP

>> TIGR03415  ABC_choXWV_ATP: choline ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.6   0.0   6.6e-21   4.1e-19      40     252 ..     498     707 ..     493     711 .. 0.81
   2 !   61.0   0.0   3.2e-19     2e-17      40     252 ..    1228    1437 ..    1222    1442 .. 0.84
   3 !   11.5   0.0   0.00035     0.022      40      83 ..    1972    2015 ..    1968    2030 .. 0.85

  Alignments for each domain:
  == domain 1    score: 66.6 bits;  conditional E-value: 6.6e-21
   TIGR03415  40 vadasldveeGeilvlmGlsGsGkssllravnglnpvsrGkvlvkdedkevdvakcdeatlrklrtkrvsmvfqkfallPWrtveenvafGlels.Gvakaerrkrveeqlelvg..laeWadkkv....gelsGGmqqrvGlarafateadillmdePfsaldPliraklqdellelqkklkktivfvshdldealklGnriaimegGrivqlgtpeei 252
                 +++ +l++  G ++ l G sGsGks+++  + ++     G++++       d  +++  ++r lr  ++s+v q+  l+   tv en+a+G+  +    + e   +  +  +++   la+  d+ v    g lsGG +qrv +ara+  + +ill+de  sald    + +q  l +++++ k+t + ++h l   ++  + ia+++ G iv +g+ ee+
  MMETSP1137-20121227|6677_1 498 CNGYNLNIPAGAMCALCGPSGSGKSTIVGLMERFYDPQAGSLHL-------DGHNLKDLNVRWLRA-QMSLVGQEPVLFS-GTVYENIAYGVLGNaTREQVEEAAKTGDAHNFITkvLADGYDTDVgqggGKLSGGQKQRVAIARAMIKKPEILLLDEATSALDNAAEKAVQTALDKIRETKKRTTITIAHRLT-TIRNSDIIAVVNRGVIVEQGNWEEL 707
                 67789***************************999888888865.......555666778899996.68*****988775.79********73220222223333333333333223666666665222268*************************************************************7.69999**************998886 PP

  == domain 2    score: 61.0 bits;  conditional E-value: 3.2e-19
   TIGR03415   40 vadasldveeGeilvlmGlsGsGkssllravnglnpvsrGkvlvkdedkevdvakcdeatlrklrtkrvsmvfqkfallPWrtveenvafGlelsGvakaerrk..rveeqlelvg..laeWadkkv....gelsGGmqqrvGlarafateadillmdePfsaldPliraklqdellelqkklkktivfvshdldealklGnriaimegGrivqlgtpeei 252 
                  +++ +l++  G ++ l G sGsGks+++  v ++   s G+++        +v+k+    ++ lr +++ +v q+  l+   tv en+a G  + G +++e+ +  ++++  e++   l +  d++v    g lsGG +qrv +ara      + l+de  sald      +q  l +l +k k+t + ++h l   ++  ++ia++++G++v  gt +++
  MMETSP1137-20121227|6677_1 1228 CNGYNLEIPAGYVCALCGPSGSGKSTIINLVQRFYDPSFGSITXD----GYEVTKLR---VQWLR-SQIGLVGQEPVLF-IGTVLENIAQG-KIGGATREEVEEaaKAANAYEFITtvLGDGFDTQVglggGKLSGGQKQRVAIARAXVRXPAVXLLDEATSALDTASERVVQKALDSLMAKRKRTTITIAHRLS-TIRNADKIAVVHKGQVVESGTYDKL 1437
                  57789***********************************98632....23445554...55555.48*****997665.78*********.68999888877611556677877533777777776333369*************************************************************7.6999**************9997765 PP

  == domain 3    score: 11.5 bits;  conditional E-value: 0.00035
   TIGR03415   40 vadasldveeGeilvlmGlsGsGkssllravnglnpvsrGkvlv 83  
                  +++ +l+v  G+++ l G sGsGks+++  v ++     G+v++
  MMETSP1137-20121227|6677_1 1972 CNGYTLHVPSGQVVALCGPSGSGKSTIIALVERFYDPQEGSVML 2015
                  67789************************999988777777766 PP

>> TIGR01288  nodI: nodulation ABC transporter NodI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.5   0.0     1e-15   6.2e-14      19     221 ..     497     706 ..     480     714 .. 0.81
   2 !   64.4   0.0   2.9e-20   1.8e-18      20     224 ..    1228    1439 ..    1211    1458 .. 0.85
   3 !   15.9   0.0   1.7e-05    0.0011      16      82 ..    1968    2035 .]    1952    2035 .] 0.80

  Alignments for each domain:
  == domain 1    score: 49.5 bits;  conditional E-value: 1e-15
   TIGR01288  19 vvndlsftiaagecfgllgpngagkstiarlvlglispdegkitvlgepv.pararlarakigvvpqfdnldreftvrenllvfgryfglstreieevips..llefar..leskadvrvad....lsggmkrrltlaralindpqllildepttgldpharhliwerlrsllargktilltthlmeeaerlcdrlcvleagrkiaegrpda 221
                 + n   + i ag    l gp g+gksti  l+  +  p+ g + + g++    ++r  ra++ +v q   l    tv en+  +g   + +  ++ee+  +    +f    l    d+ v +    lsgg k+r+++ara+i+ p++l+lde t+ ld  a + +   l  +    k   +t      + r  d + v++ g  + +g+ + 
  MMETSP1137-20121227|6677_1 497 ICNGYNLNIPAGAMCALCGPSGSGKSTIVGLMERFYDPQAGSLHLDGHNLkDLNVRWLRAQMSLVGQEPVL-FSGTVYENI-AYGVLGNATREQVEEAAKTgdAHNFITkvLADGYDTDVGQgggkLSGGQKQRVAIARAMIKKPEILLLDEATSALDNAAEKAVQTALDKIRETKKRTTITIAHRLTTIRNSDIIAVVNRGVIVEQGNWEE 706
                 5677888999**********************************9998761569*************8877.5679****6.68876655555678776541145564322556667777533333***************************************99999998777766666555556779999999999999888887665 PP

  == domain 2    score: 64.4 bits;  conditional E-value: 2.9e-20
   TIGR01288   20 vndlsftiaagecfgllgpngagkstiarlvlglispdegkitvlgepvp.ararlarakigvvpqfdnldreftvrenllvfgryfglstreieevips..llefar..leskadvrv....adlsggmkrrltlaralindpqllildepttgldpharhliwerlrsllargktilltthlmeeaerlcdrlcvleagrkiaegrpdalid 224 
                   n   + i ag +  l gp g+gksti  lv  +  p+ g it  g +v   r++  r++ig+v q   l    tv en+   g+  g +  e+ee+  +    ef    l    d++v     +lsgg k+r+++ara +  p + +lde t+ ld  +  ++ + l sl+a+ k   +t      + r  d++ v+ +g+ +  g  d l+ 
  MMETSP1137-20121227|6677_1 1228 CNGYNLEIPAGYVCALCGPSGSGKSTIINLVQRFYDPSFGSITXDGYEVTkLRVQWLRSQIGLVGQEPVLFI-GTVLENI-AQGKIGGATREEVEEAAKAanAYEFITtvLGDGFDTQVglggGKLSGGQKQRVAIARAXVRXPAVXLLDEATSALDTASERVVQKALDSLMAKRKRTTITIAHRLSTIRNADKIAVVHKGQVVESGTYDKLLA 1439
                  6677788999**********************************9987751599999*********888855.6999*97.689999999999**987651157775322667778887333358************************************************99988888777778889************999999888875 PP

  == domain 3    score: 15.9 bits;  conditional E-value: 1.7e-05
   TIGR01288   16 dkvvvndlsftiaagecfgllgpngagkstiarlvlglispdegkitvlgepvpa.rarlarakigvv 82  
                  d  + n  ++ + +g++  l gp g+gksti  lv  +  p+eg + + g +v + ++   r +ig+v
  MMETSP1137-20121227|6677_1 1968 DYTICNGYTLHVPSGQVVALCGPSGSGKSTIIALVERFYDPQEGSVMLDGVDVRTlNVSWLRQQIGLV 2035
                  4568899999***********************************99888776542566677777765 PP

>> TIGR03771  anch_rpt_ABC: anchored repeat-type ABC transporter, ATP-binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.3   0.1   3.6e-19   2.3e-17       2     193 ..     504     700 ..     503     711 .. 0.85
   2 !   58.6   0.1   2.4e-18   1.5e-16       2     199 ..    1234    1437 ..    1233    1445 .. 0.83
   3 !   12.0   0.0   0.00043     0.027       2      44 ..    1978    2020 ..    1977    2033 .. 0.87

  Alignments for each domain:
  == domain 1    score: 61.3 bits;  conditional E-value: 3.6e-19
   TIGR03771   2 svdkGellgllGpnGaGkttllrailglikvakGsvkvagkssrkgrreiGyvpqrhefawdfpidveqtvlsGra.gliGllrrpkkadfaavadalervk..lteladrpvGe....lsGGqrqrvlvaralavkpslllldepftGldlpsqellvelfeelagegt.ailmtthdlaeavatcdrvvllngrvvad 193
                 ++ +G + +l Gp G+Gk+t++  +  +  +++Gs++++g+  +    ++ ++  +  +  + p+  ++tv +  a g +G   r ++++ a + da + ++  l++  d  vG+    lsGGq+qrv +ara+  kp++lllde  + ld+ +++ +   + ++ + ++ + +  +h l+ ++  +d + ++n+ v+ +
  MMETSP1137-20121227|6677_1 504 NIPAGAMCALCGPSGSGKSTIVGLMERFYDPQAGSLHLDGH--NLKDLNVRWLRAQMSLVGQEPVLFSGTVYENIAyGVLGNATREQVEEAAKTGDAHNFITkvLADGYDTDVGQgggkLSGGQKQRVAIARAMIKKPEILLLDEATSALDNAAEKAVQTALDKIRETKKrTTITIAHRLT-TIRNSDIIAVVNRGVIVE 700
                 567899**********************************7..455678999999999*************98765499***************9998755323888888888644444***************************************99999998766515555667765.6899999*9***998865 PP

  == domain 2    score: 58.6 bits;  conditional E-value: 2.4e-18
   TIGR03771    2 svdkGellgllGpnGaGkttllrailglikvakGsvkvagkssrkgrreiGyvpqrhefawdfpidveqtvlsGra.gliGllrrpkkadfaavadalervk..lteladrpv....GelsGGqrqrvlvaralavkpslllldepftGldlpsqellvelfeelage.gtailmtthdlaeavatcdrv.vllngrvvadgapdql 199 
                  ++ +G + +l Gp G+Gk+t++  +  +  ++ Gs+  +g   +  + ++ ++  +  +  + p+   +tvl+  a g+iG   r ++++ a  a+a e ++  l +  d  v    G+lsGGq+qrv +ara    p + llde  + ld+ s+  + + + +l ++ +++ +  +h l+     +d++ v+  g+vv  g+ d+l
  MMETSP1137-20121227|6677_1 1234 EIPAGYVCALCGPSGSGKSTIINLVQRFYDPSFGSITXDGY--EVTKLRVQWLRSQIGLVGQEPVLFIGTVLENIAqGKIGGATREEVEEAAKAANAYEFITtvLGDGFDTQVglggGKLSGGQKQRVAIARAXVRXPAVXLLDEATSALDTASERVVQKALDSLMAKrKRTTITIAHRLSTI-RNADKIaVVHKGQVVESGTYDKL 1437
                  66789999********************************7..55667788888888899999********98755389*********9999999998855422777778888444459*****************************************99998665156777778888765.55565516668999999998877 PP

  == domain 3    score: 12.0 bits;  conditional E-value: 0.00043
   TIGR03771    2 svdkGellgllGpnGaGkttllrailglikvakGsvkvagkss 44  
                  +v +G++++l Gp G+Gk+t++  +  +  +++Gsv ++g   
  MMETSP1137-20121227|6677_1 1978 HVPSGQVVALCGPSGSGKSTIIALVERFYDPQEGSVMLDGVDV 2020
                  5778*********************************999654 PP

>> TIGR03740  galliderm_ABC: lantibiotic protection ABC transporter, ATP-binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.3   0.0   2.9e-18   1.8e-16      15     211 ..     497     707 ..     481     719 .. 0.72
   2 !   50.5   0.0   7.2e-16   4.5e-14      16     208 ..    1228    1434 ..    1223    1438 .. 0.75
   3 !   19.9   0.0   1.7e-06    0.0001      14      64 ..    1970    2020 ..    1956    2032 .. 0.91

  Alignments for each domain:
  == domain 1    score: 58.3 bits;  conditional E-value: 2.9e-18
   TIGR03740  15 vvnnvslkvkknsvygllGpnGaGkstllklltGllrktsGeilldgre...wtrkdlkkiGsliesPalyenltarenlkv....rtlllglpe........srieevlkivdlentekkkakqfslGmkqrlGiaiallnkPkllildePtnGldPlGiqelreliksfpe.kGitvilsshilsevelladhiGiiseGklkyekkidkd 211
                 + n  +l+++  ++ +l Gp G+Gkst++ l+  +  +++G++ ldg++   ++ + l+   sl+ + ++    t +en+      +++ ++++e        + i +vl   + +++  +  +++s G kqr+ ia a+++kP++l+lde t  ld    + ++  +  ++e k  t i  +h l+ +++ +d i +++ G++  +++ ++ 
  MMETSP1137-20121227|6677_1 497 ICNGYNLNIPAGAMCALCGPSGSGKSTIVGLMERFYDPQAGSLHLDGHNlkdLNVRWLRAQMSLVGQEPVLFSGTVYENIAYgvlgNATREQVEEaaktgdahNFITKVLAD-GYDTDVGQGGGKLSGGQKQRVAIARAMIKKPEILLLDEATSALDNAAEKAVQTALDKIREtKKRTTITIAHRLTTIRN-SDIIAVVNRGVIVEQGNWEEL 707
                 678899*****************************************97222233445555556655444444555555543111122223332210000000334444433.344455567789**********************************999999888777542556777779*****986.8***********999887765 PP

  == domain 2    score: 50.5 bits;  conditional E-value: 7.2e-16
   TIGR03740   16 vnnvslkvkknsvygllGpnGaGkstllklltGllrktsGeilldgrewtrkdlk....kiGsliesPalyenltarenl...kvr.tlllglpe....srieevlkiv...dlentekkkakqfslGmkqrlGiaiallnkPkllildePtnGldPlGiqelreliksfp.ekGitvilsshilsevelladhiGiiseGklkyekki 208 
                   n  +l+++   v +l Gp G+Gkst++ l+  +  ++ G+i+ dg e+t+  ++    +iG + ++P l+   t  en+   k+  ++ ++++e    ++  e +++v   +++++     +++s G kqr+ ia a ++ P + +lde t  ld    + +++ + s+  ++  t i  +h ls +++ ad+i ++++G++   + +
  MMETSP1137-20121227|6677_1 1228 CNGYNLEIPAGYVCALCGPSGSGKSTIINLVQRFYDPSFGSITXDGYEVTKLRVQwlrsQIGLVGQEPVLFIG-TVLENIaqgKIGgATREEVEEaakaANAYEFITTVlgdGFDTQVGLGGGKLSGGQKQRVAIARAXVRXPAVXLLDEATSALDTASERVVQKALDSLMaKRKRTTITIAHRLSTIRN-ADKIAVVHKGQVVESGTY 1434
                  577899******************************************9986653222378988899998854.55566522244323344444311113334455555221233333345689****************************************999997515567788889******86.9*********99766655 PP

  == domain 3    score: 19.9 bits;  conditional E-value: 1.7e-06
   TIGR03740   14 avvnnvslkvkknsvygllGpnGaGkstllklltGllrktsGeilldgrew 64  
                  ++ n  +l+v++ +v +l Gp G+Gkst++ l+  +  +++G+++ldg ++
  MMETSP1137-20121227|6677_1 1970 TICNGYTLHVPSGQVVALCGPSGSGKSTIIALVERFYDPQEGSVMLDGVDV 2020
                  56788899***************************************9765 PP

>> TIGR03522  GldA_ABC_ATP: gliding motility-associated ABC transporter ATP-binding subunit GldA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.6   0.0     2e-17   1.2e-15      16     248 ..     496     740 ..     479     772 .. 0.77
   2 !   51.5   0.0   3.3e-16   2.1e-14      19     224 ..    1229    1442 ..    1209    1466 .. 0.80
   3 !   22.9   0.0   1.8e-07   1.1e-05      18      78 ..    1972    2033 ..    1953    2035 .] 0.81

  Alignments for each domain:
  == domain 1    score: 55.6 bits;  conditional E-value: 2e-17
   TIGR03522  16 kaldevsfeaekGeivGflGPnGaGkstlmkiltgylkadsGsvavagedvlknslevrkniGylPehnPlyldlyvreylef....saalyklkgrklkkrveelielv...GlkaeqhkkigalskGyrqrvGlakallhdPkvlildePttGldPnqlveirevikei..akdktvilsthimqevealcdrviiinkGkivadkkleelkaaek..kkvievefeeei...dlqllekleevs 248
                 ++ +   +++  G +  + GP G+Gkst++ ++  +  +++Gs++++g++  + +++  +    l   +P+     v e +++    +a+  ++++ ++    +++i +v   G  ++  +  g+ls G +qrv +a+a++ +P++l+lde t+ ld     +++  + +i  +k++t i  +h +  ++   d + ++n+G iv + + eel a+e    + +  e +++    d++ll+ +e v+
  MMETSP1137-20121227|6677_1 496 NICNGYNLNIPAGAMCALCGPSGSGKSTIVGLMERFYDPQAGSLHLDGHNLKDLNVRWLRAQMSLVGQEPVLFSGTVYENIAYgvlgNATREQVEEAAKTGDAHNFITKVladGYDTDVGQGGGKLSGGQKQRVAIARAMIKKPEILLLDEATSALDNAAEKAVQTALDKIreTKKRTTITIAHRLTTIRN-SDIIAVVNRGVIVEQGNWEELCAMEGglFRKL-AEKQQKAsaeDAHLLKDVEAVE 740
                 556777788999***************************************9999888888888899999999999999888755456788899999998889999988766688888889999***********************************99999999999933456688888898888875.678889***************99987432222.2222222011444555555554 PP

  == domain 2    score: 51.5 bits;  conditional E-value: 3.3e-16
   TIGR03522   19 devsfeaekGeivGflGPnGaGkstlmkiltgylkadsGsvavagedvlknsle.vrkniGylPehnPlyldlyvreylefs...aalyklkgrklkkrveelielv...GlkaeqhkkigalskGyrqrvGlakallhdPkvlildePttGldPnqlveirevike.iakdk.tvilsthimqevealcdrviiinkGkivadkkleelkaaek 224 
                  +   +e+  G +  + GP G+Gkst++ ++  +  ++ Gs++ +g++v+k  ++  r +iG + +   l++   + +  + +   a+  ++++ ++  +  e+i  v   G+ ++     g+ls G +qrv +a+a +  P v +lde t+ ld      +++ + + +ak k t i  +h +  ++   d++ +++kG++v + + ++l a+ +
  MMETSP1137-20121227|6677_1 1229 NGYNLEIPAGYVCALCGPSGSGKSTIINLVQRFYDPSFGSITXDGYEVTKLRVQwLRSQIGLVGQEPVLFIGTVLENIAQGKiggATREEVEEAAKAANAYEFITTVlgdGFDTQVGLGGGKLSGGQKQRVAIARAXVRXPAVXLLDEATSALDTASERVVQKALDSlMAKRKrTTITIAHRLSTIRN-ADKIAVVHKGQVVESGTYDKLLAIGQ 1442
                  56678889999**************************************9877637889**9999999999988888776543224556788888888888888776533444444445579********************************9876666666655156554388889999999986.69**************9999977655 PP

  == domain 3    score: 22.9 bits;  conditional E-value: 1.8e-07
   TIGR03522   18 ldevsfeaekGeivGflGPnGaGkstlmkiltgylkadsGsvavagedvlkns.levrkniG 78  
                   +  ++++  G++v + GP G+Gkst++ ++  +  ++ Gsv+++g dv + +    r++iG
  MMETSP1137-20121227|6677_1 1972 CNGYTLHVPSGQVVALCGPSGSGKSTIIALVERFYDPQEGSVMLDGVDVRTLNvSWLRQQIG 2033
                  5677889999**************************************97644044566666 PP

>> TIGR01189  ccmA: heme ABC exporter, ATP-binding protein CcmA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.9   0.0   6.3e-17   3.9e-15      16     179 ..     498     672 ..     493     690 .. 0.75
   2 ?   -0.8   0.0       3.5   2.2e+02      81     120 ..    1070    1109 ..    1034    1113 .. 0.81
   3 !   50.6   0.0   6.5e-16     4e-14      10     188 ..    1222    1411 ..    1218    1422 .. 0.76
   4 !   19.0   0.0   3.1e-06   0.00019      13      68 ..    1969    2024 ..    1962    2033 .. 0.87

  Alignments for each domain:
  == domain 1    score: 53.9 bits;  conditional E-value: 6.3e-17
   TIGR01189  16 leglsfelaaGealvveGpnGiGKttLLRilaGLlkpesGevelndkelaeqrdelaeellylgHldglKaeLsalEnLkfyaallq.......seqk.tveealekvgLsgledlpva....qLsAGqkrRlalarLllskaplWiLDEPttalDkegvellaellaaHlargGi 179
                  +g ++++ aG + ++ Gp G+GK+t++ ++     p++G+++l++++l++ + ++ ++ + l  ++ +  + ++ En+ +     +       ++++ ++++ ++kv  +g++ + v     +Ls Gqk+R+a+ar +++k  + +LDE t alD+++ + ++++l++  ++   
  MMETSP1137-20121227|6677_1 498 CNGYNLNIPAGAMCALCGPSGSGKSTIVGLMERFYDPQAGSLHLDGHNLKDLNVRWLRAQMSLVGQEPVLFSGTVYENIAYGVLGNAtreqveeAAKTgDAHNFITKVLADGYD-TDVGqgggKLSGGQKQRVAIARAMIKKPEILLLDEATSALDNAAEKAVQTALDKIRETKKR 672
                 566789999*****************************************99988887766666677777889******99532222112222222224566666666555554.444312237***********************************99999998876555444 PP

  == domain 2    score: -0.8 bits;  conditional E-value: 3.5
   TIGR01189   81 ldglKaeLsalEnLkfyaallqseqktveealekvgLsgl 120 
                   +g+K+  s     +fy++  ++++ ++++a++k+ L+gl
  MMETSP1137-20121227|6677_1 1070 VKGIKTVCSFNAEEEFYKDYAKDTSAKMDKAIKKLPLTGL 1109
                  47999999999999********9999********999986 PP

  == domain 3    score: 50.6 bits;  conditional E-value: 6.5e-16
   TIGR01189   10 RgervlleglsfelaaGealvveGpnGiGKttLLRilaGLlkpesGevelndkelaeqrdelaeellylgHldglKaeLsalEnLkfyaallqseqktveealekvg........Lsgledlpv....aqLsAGqkrRlalarLllskaplWiLDEPttalDkegvellaellaaHlargGivllathqdl 188 
                  R +  + +g ++e+ aG + ++ Gp G+GK+t++ ++     p+ G+++ ++ e+++ r ++ ++   l  ++ +    ++lEn+    ++ ++++++veea ++++        L +  d+ v     +Ls Gqk+R+a+ar  +    + +LDE t alD+++ ++++++l++ +a+   + ++  + l
  MMETSP1137-20121227|6677_1 1222 RAGFPICNGYNLEIPAGYVCALCGPSGSGKSTIINLVQRFYDPSFGSITXDGYEVTKLRVQWLRSQIGLVGQEPVLFIGTVLENIAQG-KIGGATREEVEEAAKAANayefittvLGDGFDTQVglggGKLSGGQKQRVAIARAXVRXPAVXLLDEATSALDTASERVVQKALDSLMAKRKRTTITIAHRL 1411
                  556677888899***********************************************99988776666667777888******864.44444444555555554411111111222233333222269*******************************************998887666655554444 PP

  == domain 4    score: 19.0 bits;  conditional E-value: 3.1e-06
   TIGR01189   13 rvlleglsfelaaGealvveGpnGiGKttLLRilaGLlkpesGevelndkelaeqr 68  
                   ++ +g ++++ +G+++++ Gp G+GK+t++ ++     p++G+v l++ ++ + +
  MMETSP1137-20121227|6677_1 1969 YTICNGYTLHVPSGQVVALCGPSGSGKSTIIALVERFYDPQEGSVMLDGVDVRTLN 2024
                  567788899***************************************98877655 PP

>> TIGR01271  CFTR_protein: cystic fibrosis transmembrane conductor regulator (CFTR)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   1.1e-05   0.00065    1215    1312 ..     477     576 ..     470     578 .. 0.91
   2 !   50.6   0.0   1.9e-16   1.2e-14     445     639 ..     501     712 ..     495     729 .. 0.81
   3 !   17.9   0.0   1.5e-06   9.2e-05    1215    1312 ..    1207    1306 ..    1192    1311 .. 0.91
   4 !   38.2   0.0   1.1e-12   6.8e-11     532     635 ..    1334    1438 ..    1320    1446 .. 0.86
   5 !   14.3   0.0   1.7e-05    0.0011    1215    1296 ..    1951    2034 ..    1916    2035 .] 0.85

  Alignments for each domain:
  == domain 1    score: 15.0 bits;  conditional E-value: 1.1e-05
   TIGR01271 1215 ggqmtvkdltakyteagr.avlqdlsfsveagqrvgllgrtgsgkstllsallrlls.tegeiqidgvswnsvtlqkwrkafgvipqkvfilsgtfrknl 1312
                  +g+++vk++   y +a +  + +   + + ag    l g +gsgkst++  + r+ +   g +++dg   + + ++  r  + ++ q   ++sgt   n+
  MMETSP1137-20121227|6677_1  477 KGHIEVKEVVFAYPSAPHfNICNGYNLNIPAGAMCALCGPSGSGKSTIVGLMERFYDpQAGSLHLDGHNLKDLNVRWLRAQMSLVGQEPVLFSGTVYENI 576 
                  699**********99876378999******************************9982569**************999999**************99886 PP

  == domain 2    score: 50.6 bits;  conditional E-value: 1.9e-16
   TIGR01271 445 islklekgqllavagstgsgkssllmmilgelepsegkikhsg.............risfspqvswimpgtikdniifglsydeyryt..svikacqleedia.llaekdktvlgeggitlsggqrarislaravykdadlylldspfsyldvvtekeifesclckllank..trilvtsklehlkkadkilllhegscyfygtfselqakkp 639
                  +l++  g + a++g +gsgks+++ ++    +p  g ++  g             ++s   q + ++ gt+ +ni +g+  +  r +     k+ +  + i+ +la+  +t +g+gg  lsggq+ r+++ara+ k  ++ lld   s ld  +ek + ++ l k+  +k  t i ++ +l  ++++d i ++  g+    g + el a + 
  MMETSP1137-20121227|6677_1 501 YNLNIPAGAMCALCGPSGSGKSTIVGLMERFYDPQAGSLHLDGhnlkdlnvrwlraQMSLVGQEPVLFSGTVYENIAYGVLGNATREQveEAAKTGDAHNFITkVLADGYDTDVGQGGGKLSGGQKQRVAIARAMIKKPEILLLDEATSALDNAAEKAV-QTALDKIRETKkrTTITIAHRLTTIRNSDIIAVVNRGVIVEQGNWEELCAMEG 712
                 5788999****************99888888888888776555322323232222257889999999*************9988886411455666677778735789999**********************************************97.577888877661255777899**********************9999988765 PP

  == domain 3    score: 17.9 bits;  conditional E-value: 1.5e-06
   TIGR01271 1215 ggqmtvkdltaky.teagravlqdlsfsveagqrvgllgrtgsgkstllsallrllste.geiqidgvswnsvtlqkwrkafgvipqkvfilsgtfrknl 1312
                  +g++ v d+   y t ag  + +   + + ag    l g +gsgkst++  + r+ +   g i+ dg     + +q  r  +g++ q   ++ gt   n+
  MMETSP1137-20121227|6677_1 1207 SGHIVVTDVIFAYpTRAGFPICNGYNLEIPAGYVCALCGPSGSGKSTIINLVQRFYDPSfGSITXDGYEVTKLRVQWLRSQIGLVGQEPVLFIGTVLENI 1306
                  5999***999888789**************************************998544***********************************98886 PP

  == domain 4    score: 38.2 bits;  conditional E-value: 1.1e-12
   TIGR01271  532 allaekdktvlgeggitlsggqrarislaravykdadlylldspfsyldvvtekeifesclckllank..trilvtsklehlkkadkilllhegscyfygtfselq 635 
                  ++l +  +t +g gg  lsggq+ r+++ara  +   + lld   s ld  +e+ + ++ l  l+a++  t i ++ +l  +++adki ++h+g+    gt+ +l 
  MMETSP1137-20121227|6677_1 1334 TVLGDGFDTQVGLGGGKLSGGQKQRVAIARAXVRXPAVXLLDEATSALDTASER-VVQKALDSLMAKRkrTTITIAHRLSTIRNADKIAVVHKGQVVESGTYDKLL 1438
                  4667777889999************************************99997.678999****986125577889********************999998875 PP

  == domain 5    score: 14.3 bits;  conditional E-value: 1.7e-05
   TIGR01271 1215 ggqmtvkdltaky.teagravlqdlsfsveagqrvgllgrtgsgkstllsallrlls.tegeiqidgvswnsvtlqkwrkafgv 1296
                   g+++++d+   y t    ++ +  ++ v +gq v l g +gsgkst+++ + r+ +  eg + +dgv   ++ +   r+ +g+
  MMETSP1137-20121227|6677_1 1951 AGDIQLQDVVFAYpTRLDYTICNGYTLHVPSGQVVALCGPSGSGKSTIIALVERFYDpQEGSVMLDGVDVRTLNVSWLRQQIGL 2034
                  57888888888885666789999999****************************986379********9999998888888776 PP

>> TIGR02633  xylG: D-xylose ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.2   0.0   1.1e-19   6.8e-18      17     220 ..     498     699 ..     481     711 .. 0.86
   2 !   46.6   0.0   5.8e-15   3.6e-13      18     222 ..    1229    1431 ..    1223    1439 .. 0.85
   3 !   14.8   0.0   2.5e-05    0.0016      17      72 ..    1972    2025 ..    1963    2032 .. 0.83

  Alignments for each domain:
  == domain 1    score: 62.2 bits;  conditional E-value: 1.1e-19
   TIGR02633  17 ldnidlklraGeivslcGenGaGkstlmkvlsgvyphGtydGeilfegeelkassirdterkGiviihqeltlvkelsvleniflGneitlkGglmdydamvlrakellrelkld..asnvtrpvsdlGlGqqqlveiakalnkqvrllildepsasl...teketeilldiirdlkakgvacvyishkleevkavsdtisvirdGqhv 220
                  ++ +l++ aG + +lcG  G+Gkst++ ++   y      G ++ +g++lk  ++r   r+ ++++ qe +l    +v eni  G        +++++a +  a++++ ++  d  +++v +  ++l +Gq+q v ia+a+ k+  +l+lde +++l   +ek +++ ld ir+ k+++   + i+h+l  ++  sd i+v+  G  v
  MMETSP1137-20121227|6677_1 498 CNGYNLNIPAGAMCALCGPSGSGKSTIVGLMERFYDP--QAGSLHLDGHNLKDLNVRWL-RAQMSLVGQEPVLFSG-TVYENIAYGVLGNATREQVEEAAKTGDAHNFITKVLADgyDTDVGQGGGKLSGGQKQRVAIARAMIKKPEILLLDEATSALdnaAEKAVQTALDKIRETKKRT--TITIAHRLTTIRN-SDIIAVVNRGVIV 699
                 578899**************************99965..57***************975.7889*******99876.8*****9887666666679999*************98833456677889999****************************943345678999******99996..6899*****9986.99**999988766 PP

  == domain 2    score: 46.6 bits;  conditional E-value: 5.8e-15
   TIGR02633   18 dnidlklraGeivslcGenGaGkstlmkvlsgvyphGtydGeilfegeelkassirdterkGiviihqeltlvkelsvleniflGneitlkGglmdydamvlrakellrelkld..asnvtrpvsdlGlGqqqlveiakalnkqvrllildepsaslteketeilldiirdlka.kgvacvyishkleevkavsdtisvirdGqhvat 222 
                  ++ +l++ aG + +lcG  G+Gkst++ ++   y      G i+ +g e+    ++   r  i ++ qe +l    +vleni  G+        ++++a    a e++  +  d  +++v +  ++l +Gq+q v ia+a  +   + +lde +++l  +  +++ + +  l a +  + + i+h+l  ++  +d+i+v+  Gq v +
  MMETSP1137-20121227|6677_1 1229 NGYNLEIPAGYVCALCGPSGSGKSTIINLVQRFYDPS--FGSITXDGYEVTKLRVQW-LRSQIGLVGQEPVLFIG-TVLENIAQGKIGGATREEVEEAAKAANAYEFITTVLGDgfDTQVGLGGGKLSGGQKQRVAIARAXVRXPAVXLLDEATSALDTASERVVQKALDSLMAkRKRTTITIAHRLSTIRN-ADKIAVVHKGQVVES 1431
                  67899*************************9999653..499*99999999888865.5788*******999876.8********98777777899999999999***999877223455667789*******************************88877777777777754156789*********997.8*********98865 PP

  == domain 3    score: 14.8 bits;  conditional E-value: 2.5e-05
   TIGR02633   17 ldnidlklraGeivslcGenGaGkstlmkvlsgvyphGtydGeilfegeelkassi 72  
                   ++ +l++ +G++v+lcG  G+Gkst++ ++   y     +G ++ +g ++++ ++
  MMETSP1137-20121227|6677_1 1972 CNGYTLHVPSGQVVALCGPSGSGKSTIIALVERFYDP--QEGSVMLDGVDVRTLNV 2025
                  678899**********************999988853..57888888777776655 PP

>> TIGR03719  ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.1   0.0   0.00019     0.012     337     381 ..     497     541 ..     475     580 .. 0.83
   2 !   33.4   0.0   6.5e-11   4.1e-09     160     275 ..     619     739 ..     584     764 .. 0.75
   3 !   34.3   0.0   3.5e-11   2.2e-09     327     489 ..    1214    1396 ..    1171    1409 .. 0.75
   4 !   24.5   0.0   3.3e-08   2.1e-06     161     248 ..    1350    1439 ..    1315    1470 .. 0.75
   5 !   16.4   0.0   9.1e-06   0.00057     323     382 ..    1954    2017 ..    1910    2033 .. 0.73

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 0.00019
   TIGR03719 337 liddlsfklpkggivGviGpnGaGkstlfklitgkekpdsGelki 381
                 + +  ++++p+g++  + Gp G+Gkst++ l+    +p++G+l++
  MMETSP1137-20121227|6677_1 497 ICNGYNLNIPAGAMCALCGPSGSGKSTIVGLMERFYDPQAGSLHL 541
                 5677899**********************************9987 PP

  == domain 2    score: 33.4 bits;  conditional E-value: 6.5e-11
   TIGR03719 160 eklsGGekrrvalcrlllekPdlllldePtnhldaesvaW....lekflkeykGtvvavthdryfldnvaeWileldrGegipykgnysswleqke...krleqeekeeaarkkalkkeleWv 275
                  klsGG+k+rva++r +++kP++lllde t  ld  + +     l+k  +  k t + ++h    + n ++ i  ++rG  +  +gn+ +         ++l++++++ +a++ +l k++e v
  MMETSP1137-20121227|6677_1 619 GKLSGGQKQRVAIARAMIKKPEILLLDEATSALDNAAEKAvqtaLDKIRETKKRTTITIAHRLTTIRN-SDIIAVVNRGVIV-EQGNWEELCAMEGglfRKLAEKQQKASAEDAHLLKDVEAV 739
                 48********************************7665550011555555567789999996666655.6889999999755.4788877655442222566666666666666666666666 PP

  == domain 3    score: 34.3 bits;  conditional E-value: 3.5e-11
   TIGR03719  327 nlskafgdkl...liddlsfklpkggivGviGpnGaGkstlfklitgkekpdsGelki.Getvklayvdqsrdald..dnk......tvweeisdGl......dllklgkvevnsrayvgrfnfkGadqqkkv..gelsGGernrvhlakllkeggnvllldePtndldvetlraleeallef 489 
                  ++  a+  +    + +  ++++p+g +  + Gp G+Gkst+++l++   +p  G+++  G  v+   v+  r+++    ++      tv e+i++G+      + ++ + +  n+  ++++    G d q  +  g+lsGG+++rv +a+   +   v llde t  ld    r +++al+++
  MMETSP1137-20121227|6677_1 1214 DVIFAYPTRAgfpICNGYNLEIPAGYVCALCGPSGSGKSTIINLVQRFYDPSFGSITXdGYEVTKLRVQWLRSQIGlvGQEpvlfigTVLENIAQGKiggatrEEVEEAAKAANAYEFITTVLGDGFDTQVGLggGKLSGGQKQRVAIARAXVRXPAVXLLDEATSALDTASERVVQKALDSL 1396
                  5555555554222668899*************************************8757788777788878776422232233333899***98853333224555555566666678888888888888763359**********************************999999999765 PP

  == domain 4    score: 24.5 bits;  conditional E-value: 3.3e-08
   TIGR03719  161 klsGGekrrvalcrlllekPdlllldePtnhldaesvaWlekfl....keykGtvvavthdryfldnvaeWileldrGegipykgnysswle 248 
                  klsGG+k+rva++r  +  P + llde t  ld+ s   ++k l    ++ k t + ++h    + n a+ i  + +G+ +   g y + l 
  MMETSP1137-20121227|6677_1 1350 KLSGGQKQRVAIARAXVRXPAVXLLDEATSALDTASERVVQKALdslmAKRKRTTITIAHRLSTIRN-ADKIAVVHKGQVVE-SGTYDKLLA 1439
                  89*******************************9887665555511116677899999997666655.56788888888765.567777665 PP

  == domain 5    score: 16.4 bits;  conditional E-value: 9.1e-06
   TIGR03719  323 ievenlskafgdkl...liddlsfklpkggivGviGpnGaGkstlfklitgkekpdsGelki.G 382 
                  i+++++  a+  +l   + +  ++++p g +v + Gp G+Gkst++ l+    +p++G++ + G
  MMETSP1137-20121227|6677_1 1954 IQLQDVVFAYPTRLdytICNGYTLHVPSGQVVALCGPSGSGKSTIIALVERFYDPQEGSVMLdG 2017
                  55666666666554222788999************************************98733 PP

>> TIGR01194  cyc_pep_trnsptr: cyclic peptide transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.8   0.0   1.4e-12     9e-11     333     550 ..     476     701 ..     470     704 .. 0.78
   2 ?   -2.9   0.6       6.3   3.9e+02     217     262 ..     986    1029 ..     911    1037 .. 0.58
   3 !   40.9   0.0   3.4e-13   2.1e-11     275     549 ..    1144    1430 ..    1114    1433 .. 0.77
   4 ?   -2.6   0.7         5   3.1e+02      56     177 ..    1615    1741 ..    1585    1770 .. 0.67
   5 !   24.8   0.0   2.5e-08   1.5e-06     333     405 ..    1950    2020 ..    1898    2030 .. 0.87

  Alignments for each domain:
  == domain 1    score: 38.8 bits;  conditional E-value: 1.4e-12
   TIGR01194 333 svdslelkdvrysykdvessegfal.GpidlriasGelvyivGenGcGkstliklllGlyipqeGellldGeavsdesrddyrdlfsavfadyylfddlvqpdekkqasldqat.....tylsrleledk.vkvedlnyst.....ttdlstGqrkrlalvnayleerpvllldewaadqdpafkrvfyeellpdlkrrGktilvishddryfeladrlikladGkvvke 550
                   + +e+k+v ++y+++     f++    +l+i  G +  + G  G Gkst++ l+  +y pq G l ldG+ + d      r  +s v  +  lf   v   +     l +at     +  ++ + ++   kv   +y t       +ls Gq++r+a+  a +++  +lllde ++  d a  +   + l      + +t + i+h     + +d +  +  G +v++
  MMETSP1137-20121227|6677_1 476 VKGHIEVKEVVFAYPSA---PHFNIcNGYNLNIPAGAMCALCGPSGSGKSTIVGLMERFYDPQAGSLHLDGHNLKDLNVRWLRAQMSLVGQEPVLFSGTVYE-NIAYGVLGNATreqveEAAKTGDAHNFiTKVLADGYDTdvgqgGGKLSGGQKQRVAIARAMIKKPEILLLDEATSALDNAAEKAVQTALDKIRETKKRTTITIAHRLTTIRNSDIIAVVNRGVIVEQ 701
                 56788999999998854...456551468***********************************************999999**9**999999999988873.3333333333311000333333332221356666666522222468**************************************9999977777788899*****9999999999999999999875 PP

  == domain 2    score: -2.9 bits;  conditional E-value: 6.3
   TIGR01194  217 aisesavrvadlniieilifilaktvGslllsllvGllltlaayfa 262 
                  +i+ +   v  l ++ +l+f+ a+    ++l ++ G+ lt+aa f 
  MMETSP1137-20121227|6677_1  986 KIQLTIRLVCGLVLAVVLMFVFAHW--AMTLIVIAGVPLTVAAAFV 1029
                  4444444444455555555555543..4666666666666666554 PP

  == domain 3    score: 40.9 bits;  conditional E-value: 3.4e-13
   TIGR01194  275 vllyikGplvqlvsilpilararvaft..rlaelser..isepepelelseaenvllldhdksvdslelkdvrysykdvessegfalGpidlriasGelvyivGenGcGkstliklllGlyipqeGellldGeavsdesrddyrdlfsavfadyylfddlvqpd..ekk.....qasldqattylsrleledkvkvedlnysttt.....dlstGqrkrlalvnayleerpvllldewaadqdpafkrvfyeellpdlkrrGktilvishddryfeladrlikladGkvvk 549 
                  ++ly+  p+v +  +lp la+   ++t  + a+l+ +  ++  e   ++  + ++  + ++   + + + dv ++y+   +  +      +l i  G +  + G  G Gkst+i l+  +y p  G +  dG  v++   +  r     v  +  lf   v  +  ++k     +  +++a +  +  e+     v + ++ t       +ls Gq++r+a+  a +    v llde ++  d a  rv  + l   + +r +t + i+h     + ad++  + +G+vv+
  MMETSP1137-20121227|6677_1 1144 IVLYLLVPIVIVQLLLPSLAQMASTVTdgKEAQLAAEqlFERLERTSKVDPSSKIGEVPPNNLSGHIVVTDVIFAYPTRAG-FPICN-GYNLEIPAGYVCALCGPSGSGKSTIINLVQRFYDPSFGSITXDGYEVTKLRVQWLRSQIGLVGQEPVLFIGTVLENiaQGKiggatREEVEEAAKAANAYEFI--TTVLGDGFDTQVglgggKLSGGQKQRVAIARAXVRXPAVXLLDEATSALDTASERVVQKALDSLMAKRKRTTITIAHRLSTIRNADKIAVVHKGQVVE 1430
                  7899999999999999999885433331145555422113344444444444555566799999************97654.34443.48***********************************************999999****99999999986554422112221101123344444444444443..45677777765422222799****************************************999999999***************************97 PP

  == domain 4    score: -2.6 bits;  conditional E-value: 5
   TIGR01194   56 lsfvGlsllallsrivadlftayvsqriiarlrkelgekvlsapleev..errrahrlltlltsdidtlsdtll.ilttllvelavtlfgla...ylaylsvvvfll.tvvlivlGvaayllarsrGlk 177 
                  +   G+  +a++   +a l+    +q++ ++lr    +  l   +     e   a +l + l + +  ++++    + tll     ++ gl+   y+ y  + + +l +v +i l ++++++++ +  k
  MMETSP1137-20121227|6677_1 1615 YIIIGVVAVAVITAETACLGI--PGQHLTTNLRSLCMRTFLKQDMGYFdaESNSAGELTSFLEEKVTLVQAMNGeKIGTLLRTIFTLVSGLGlvfYFGYWQLSLVMLaSVPIIALAMSVQMMVQLGATK 1741
                  455677777777777777764..6899999999888888898888755115567788888998888888877641445554444444444441115555443333321455566666667766666555 PP

  == domain 5    score: 24.8 bits;  conditional E-value: 2.5e-08
   TIGR01194  333 svdslelkdvrysykdvessegfalGpidlriasGelvyivGenGcGkstliklllGlyipqeGellldGeav 405 
                  + + ++l+dv ++y+              l++ sG++v + G  G Gkst+i l+  +y pqeG ++ldG  v
  MMETSP1137-20121227|6677_1 1950 CAGDIQLQDVVFAYPTRLDYT--ICNGYTLHVPSGQVVALCGPSGSGKSTIIALVERFYDPQEGSVMLDGVDV 2020
                  567899999999998754332..33456899***************************************987 PP

>> TIGR03269  met_CoM_red_A2: methyl coenzyme M reductase system, component A2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.9   0.0     2e-14   1.3e-12     301     515 ..     499     707 ..     479     712 .. 0.81
   2 ?    4.7   0.0     0.031       1.9     304     341 ..    1232    1269 ..    1222    1325 .. 0.62
   3 !   39.8   0.1     7e-13   4.3e-11     168     258 ..    1350    1439 ..    1301    1466 .. 0.86
   4 ?    6.1   0.0     0.012      0.72      17      60 ..    1973    2014 ..    1954    2021 .. 0.71

  Alignments for each domain:
  == domain 1    score: 44.9 bits;  conditional E-value: 2e-14
   TIGR03269 301 dnvslevkekeifGlvGtsGaGkttlskilaGvleptsGevevrvGdewvdmtkkgvlerGrakkyiGllhqeyalyphrtvlenlteai....glelpdelakrkavivlkavGfdeekakeildklpdelseGerhrvalaqvlikeprivildeptGtmdpitkvkvaesilkareeleetfvivshdmdfvlevcdraalmrdGkivkiGdpeei 515
                 ++ +l++  + +  l G sG+Gk+t+  ++    +p +G +++  G++  d+  +        +  + l+ qe  l++  tv en++  +    + e  +e ak    + + +  + + + +++  +   +ls G++ rva+a+ +ik+p i++lde t ++d  ++++v+ ++ k re  ++t + ++h +  +++  d +a++  G iv+ G+ ee+
  MMETSP1137-20121227|6677_1 499 NGYNLNIPAGAMCALCGPSGSGKSTIVGLMERFYDPQAGSLHLD-GHNLKDLNVRW------LRAQMSLVGQEPVLFS-GTVYENIAYGVlgnaTREQVEEAAKTGDAHNFITKVLADGYDTDVG-QGGGKLSGGQKQRVAIARAMIKKPEILLLDEATSALDNAAEKAVQTALDKIRETKKRTTITIAHRLTTIRN-SDIIAVVNRGVIVEQGNWEEL 707
                 56678888899999999999999999999999999999999875.77777776555......3445788889988887.4778887765422114456666777766777777777777777764.56789*************************************************************99998.799*************99887 PP

  == domain 2    score: 4.7 bits;  conditional E-value: 0.031
   TIGR03269  304 slevkekeifGlvGtsGaGkttlskilaGvleptsGev 341 
                  +le+  + +  l G sG+Gk+t+ +++    +p+ G +
  MMETSP1137-20121227|6677_1 1232 NLEIPAGYVCALCGPSGSGKSTIINLVQRFYDPSFGSI 1269
                  45555556666666666666666666666666666654 PP

  == domain 3    score: 39.8 bits;  conditional E-value: 7e-13
   TIGR03269  168 dlsGGekqrvvlarqlakeplllladeptGtldpktaklvhealkeavkeedislvltshwpeviedlsdkaillekGeiveeGepeevva 258 
                  +lsGG+kqrv +ar  ++ p + l de t +ld  +  +v +al   + +++ + +  +h    i + +dk  +++kG++ve G+ ++++a
  MMETSP1137-20121227|6677_1 1350 KLSGGQKQRVAIARAXVRXPAVXLLDEATSALDTASERVVQKALDSLMAKRKRTTITIAHRLSTIRN-ADKIAVVHKGQVVESGTYDKLLA 1439
                  69**********************************************9999999999999999988.6777789**********998765 PP

  == domain 4    score: 6.1 bits;  conditional E-value: 0.012
   TIGR03269   17 knisleleeGevlGilGksGaGksvllhllrGldeyeptsGkii 60  
                  +   l++  G+v+ + G sG+Gks ++ l+     y+p++G ++
  MMETSP1137-20121227|6677_1 1973 NGYTLHVPSGQVVALCGPSGSGKSTIIALVERF--YDPQEGSVM 2014
                  445677777888888888888888888877654..557777765 PP

>> TIGR02323  CP_lyasePhnK: phosphonate C-P lyase system protein PhnK
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.8   0.0   6.9e-10   4.3e-08      24     220 ..     505     702 ..     480     709 .. 0.73
   2 !   43.2   0.1   1.1e-13   7.1e-12      24     222 ..    1235    1434 ..    1211    1442 .. 0.81
   3 ?   -2.0   0.0       7.1   4.4e+02      84     125 ..    1736    1777 ..    1678    1807 .. 0.70
   4 !   12.5   0.0   0.00026     0.016      24      61 ..    1979    2016 ..    1963    2029 .. 0.84

  Alignments for each domain:
  == domain 1    score: 30.8 bits;  conditional E-value: 6.9e-10
   TIGR02323  24 lypGevlgivGesGsGkstllkalaarlladaGevtyesrsrelellalseaerrlllrtewGlvhqnprGlrmevsaGanigerllavgarh....yGkiraaakwlekveidaari....kpaafsGGmqqrlqiarnlvtrprlvfm.eptGGl..vsvqarllllrglvrelglaviivth.lavarllaqrllvmkqGrvvesG 220
                 +  G + ++ G sGsGkst++  +     ++aG+++ +  +       l + + r  lr++  lv q+p  +  +v    ni+  +l   +r       k  +a +++ kv  d   +       ++sGG +qr+ iar+++ +p ++++ e t  l   + +a    l ++    + ++i ++h l+ +r  ++ + v+++G +ve+G
  MMETSP1137-20121227|6677_1 505 IPAGAMCALCGPSGSGKSTIVGLMERFYDPQAGSLHLDGHN-------LKDLNVR-WLRAQMSLVGQEPVLFSGTVY--ENIAYGVLGNATREqveeAAKTGDAHNFITKVLADGYDTdvgqGGGKLSGGQKQRVAIARAMIKKPEILLLdEATSALdnAAEKAVQTALDKIRETKKRTTITIAHrLTTIRN-SDIIAVVNRGVIVEQG 702
                 456888899**************************998766.......5555566.67999********86555554..34444444444443000044555556699999887655533545679*********************99999****963332333334555555556778889998999996.77999*********99 PP

  == domain 2    score: 43.2 bits;  conditional E-value: 1.1e-13
   TIGR02323   24 lypGevlgivGesGsGkstllkalaarlladaGevtyesrsrelellalseaerrlllrtewGlvhqnpr...GlrmevsaGanigerllavgarhyGkiraaakwlekveidaari....kpaafsGGmqqrlqiarnlvtrprlvfm.eptGGlvsvqarll..llrglvrelglaviivth.lavarllaqrllvmkqGrvvesGlt 222 
                  +  G v ++ G sGsGkst+++ +     ++ G++t +      e+++l    r + lr++ Glv q+p    G  +e  a + ig       +    k ++a +++  v  d   +       ++sGG +qr+ iar+ v  p + ++ e t  l +   r++   l +l+ + + ++i ++h l+ +r  a+++ v+++G+vvesG  
  MMETSP1137-20121227|6677_1 1235 IPAGYVCALCGPSGSGKSTIINLVQRFYDPSFGSITXDGY----EVTKL----RVQWLRSQIGLVGQEPVlfiGTVLENIAQGKIGGATREE-VEEAAKAANAYEFITTVLGDGFDTqvglGGGKLSGGQKQRVAIARAXVRXPAVXLLdEATSALDTASERVVqkALDSLMAKRKRTTITIAHrLSTIRN-ADKIAVVHKGQVVESGTY 1434
                  556999*****************************97654....46655....667899**********86567777777888887655544.34556666677788888655332211337889*********************9999******9999999877899***************9999996.889************975 PP

  == domain 3    score: -2.0 bits;  conditional E-value: 7.1
   TIGR02323   84 ewGlvhqnpr..GlrmevsaGanigerllavgarhyGkiraaak 125 
                  + G  +q +   G + e saG+ ige ++  g r      a+++
  MMETSP1137-20121227|6677_1 1736 QLGATKQGAEksGAKEEKSAGSFIGEVVI--GIRTVSSFSAEQT 1777
                  567777766556999999*******9655..5566665555554 PP

  == domain 4    score: 12.5 bits;  conditional E-value: 0.00026
   TIGR02323   24 lypGevlgivGesGsGkstllkalaarlladaGevtye 61  
                  +  G+v+++ G sGsGkst+++ +     +++G+v  +
  MMETSP1137-20121227|6677_1 1979 VPSGQVVALCGPSGSGKSTIIALVERFYDPQEGSVMLD 2016
                  4569******************9999999****99876 PP

>> TIGR00954  3a01203: peroxysomal long chain fatty acyl transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.2   0.0   1.3e-13     8e-12     468     643 ..     497     684 ..     475     696 .. 0.73
   2 !   30.1   0.1   5.7e-10   3.5e-08     464     643 ..    1223    1414 ..    1173    1420 .. 0.75
   3 !    8.9   0.0    0.0015     0.092     465     497 ..    1968    2000 ..    1946    2014 .. 0.79

  Alignments for each domain:
  == domain 1    score: 42.2 bits;  conditional E-value: 1.3e-13
   TIGR00954 468 lieeLsfevksGnhlLiiGPnGcGKsslfRilgelWPvyg...........glltkpeegklFyvPqrPYmslgtlRdqiiYPdssedfkerglsdkdLeqiLeevkLedllereggwdavqdWkdvLsgGekqRiamARlfyHkPkfavLDEctsAvsvdvEdklyelakev....gitllsvshrksLw 643
                 + +  +++++ G    ++GP G GKs +  ++  ++   +            l     + ++  v q P +  gt+ + i Y    +  +e  +++   +    +  ++++l  +   d v +    LsgG+kqR+a+AR +  kP+  +LDE+tsA+    E+++  ++ ++    + t ++++hr + +
  MMETSP1137-20121227|6677_1 497 ICNGYNLNIPAGAMCALCGPSGSGKSTIVGLMERFYDPQAgslhldghnlkDLNVRWLRAQMSLVGQEPVLFSGTVYENIAYGVLGNATRE-QVEE-AAKTGDAHNFITKVLADGYDTD-VGQGGGKLSGGQKQRVAIARAMIKKPEILLLDEATSALDNAAEKAVQTALDKIretkKRTTITIAHRLTTI 684
                 5677899***************************995555488888555533333335678999******************765443332.2222.2222222333556666655544.6677899*******************************999999887665544111146789999998766 PP

  == domain 2    score: 30.1 bits;  conditional E-value: 5.7e-10
   TIGR00954  464 egdvlieeLsfevksGnhlLiiGPnGcGKsslfRilgelW.Pvyg..........glltkpeegklFyvPqrPYmslgtlRdqiiYPdssedfkerglsdkdLeqiLeevkLedlleregg..wda.vqdWkdvLsgGekqRiamARlfyHkPkfavLDEctsAvsvdvEd....klyelakevgitllsvshrksLw 643 
                  +g  + +  ++e++ G    ++GP G GKs +  ++  ++ P +g           l+ +  ++++  v q P +  gt+ + i         k  g + +++e+  +  +  + ++   g  +d+ v      LsgG+kqR+a+AR     P   +LDE+tsA+    E     +l +l+ + + t ++++hr s +
  MMETSP1137-20121227|6677_1 1223 AGFPICNGYNLEIPAGYVCALCGPSGSGKSTIINLVQRFYdPSFGsitxdgyevtKLRVQWLRSQIGLVGQEPVLFIGTVLENIAQG------KIGGATREEVEEAAKAANAYEFITTVLGdgFDTqVGLGGGKLSGGQKQRVAIARAXVRXPAVXLLDEATSALDTASERvvqkALDSLMAKRKRTTITIAHRLSTI 1414
                  5566778889999***********************99987999999999999865666667999**************99998543......33344444444444444444444433322265414455789******************************9887665000144455566677889999998866 PP

  == domain 3    score: 8.9 bits;  conditional E-value: 0.0015
   TIGR00954  465 gdvlieeLsfevksGnhlLiiGPnGcGKsslfR 497 
                  +  + +  +++v+sG+ + ++GP G GKs +  
  MMETSP1137-20121227|6677_1 1968 DYTICNGYTLHVPSGQVVALCGPSGSGKSTIIA 2000
                  4567788899*******************9875 PP

>> TIGR01257  rim_protein: rim ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.1   0.0   7.7e-10   4.8e-08     947    1142 ..     499     702 ..     464     728 .. 0.74
   2 !   35.0   0.0   6.6e-12   4.1e-10     941    1164 ..    1223    1454 ..    1198    1497 .. 0.77
   3 !    6.4   0.0    0.0027      0.16     956    1007 ..    1982    2034 ..    1958    2035 .] 0.92

  Alignments for each domain:
  == domain 1    score: 28.1 bits;  conditional E-value: 7.7e-10
   TIGR01257  947 drlnitfyenqitaflghngagktttlsiltgllpptsgtvlvggkdie.tnldavrqslgmcpqhnilfhhltvaehilfya..qlkgrsweeaqlemea.....mledtglhhkrneeaqdlsgglqrklsvaiafvgdakvvvldeptsgvdpysrrsiwdlllkyrsg..rtiimsthhmdeadllgdriaiisqgrlycsg 1142
                  +  n+ +    + a+ g  g+gk+t + ++  +  p +g++ + g++++  n+  +r  + ++ q  +lf   tv e i +    +   +  eea    +a      +   g      +    lsgg ++++++a a++    +++lde ts +d  + +++   l k r    rt i  +h +       d ia++++g +   g
  MMETSP1137-20121227|6677_1  499 NGYNLNIPAGAMCALCGPSGSGKSTIVGLMERFYDPQAGSLHLDGHNLKdLNVRWLRAQMSLVGQEPVLFSG-TVYENIAYGVlgNATREQVEEAAKTGDAhnfitKVLADGYDTDVGQGGGKLSGGQKQRVAIARAMIKKPEILLLDEATSALDNAAEKAVQTALDKIRETkkRTTITIAHRLTTI-RNSDIIAVVNRGVIVEQG 702 
                  45566667778999*******************************9985269999**************975.88898876431122233445555444441111122334777777888899*******************************************999974338899888887654.346777777777655444 PP

  == domain 2    score: 35.0 bits;  conditional E-value: 6.6e-12
   TIGR01257  941 sgrpavdrlnitfyenqitaflghngagktttlsiltgllpptsgtvlvggkdie.tnldavrqslgmcpqhnilfhhltvaehilfyaqlkgrswee...aq.....lemeamledtglhhkrneeaqdlsgglqrklsvaiafvgdakvvvldeptsgvdpysrrsiwdll..lkyrsgrtiimsthhmdeadllgdriaiisqgrlycsgtplflkncfgtglyltlvrkmk 1164
                  +g p  +  n+ +    + a+ g  g+gk+t + ++  +  p+ g++   g ++    ++ +r  +g++ q  +lf   tv e i    ++ g ++ee   a       e+ + +   g+  +       lsgg ++++++a a v    v +lde ts +d  s r +   l  l  +  rt i  +h +       d+ia++ +g++  sgt   l      g +  l +k  
  MMETSP1137-20121227|6677_1 1223 AGFPICNGYNLEIPAGYVCALCGPSGSGKSTIINLVQRFYDPSFGSITXDGYEVTkLRVQWLRSQIGLVGQEPVLFIG-TVLENIA-QGKIGGATREEveeAAkaanaYEFITTVLGDGFDTQVGLGGGKLSGGQKQRVAIARAXVRXPAVXLLDEATSALDTASERVVQKALdsLMAKRKRTTITIAHRLSTIR-NADKIAVVHKGQVVESGTYDKLLAIGQGGRFYELAQKQE 1454
                  57888889999999999**********************************9985157889**************975.8888875.4566676665511133111112333334445777788888899*************************************9976653344556788888899987664.68****************876665555555555655554 PP

  == domain 3    score: 6.4 bits;  conditional E-value: 0.0027
   TIGR01257  956 nqitaflghngagktttlsiltgllpptsgtvlvggkdiet.nldavrqslgm 1007
                   q+ a+ g  g+gk+t ++++  +  p  g+v++ g d+ t n+  +rq +g+
  MMETSP1137-20121227|6677_1 1982 GQVVALCGPSGSGKSTIIALVERFYDPQEGSVMLDGVDVRTlNVSWLRQQIGL 2034
                  699************************************98689999*99997 PP

>> TIGR00956  3a01205: pleiotropic drug resistance family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.9   0.0   4.9e-11     3e-09      73     269 ..     494     679 ..     481     708 .. 0.74
   2 !   31.5   0.1   1.3e-10   7.9e-09      84     297 ..    1235    1436 ..    1217    1442 .. 0.83
   3 ?    3.0   0.0      0.05       3.1     778     811 ..    1971    2003 ..    1932    2027 .. 0.82

  Alignments for each domain:
  == domain 1    score: 32.9 bits;  conditional E-value: 4.9e-11
   TIGR00956  73 kfdilkdvdglikpgelvvvLGrPgsGcstlLksiasktegfkkgkeskitYdglskeeik.khyrgdvvYsaetdvHlpsltvketLdfaarlktpqnRvkgvsreeyakkladvvlaiyGLshtkntkvGndlvRGvsGGerkRvsiaevlvakakiqcwDnatrGLDsatalefvkalktsaeilkatalvaiyq 269
                 +f+i +  +  i +g +  + G+ gsG+st+     + +e+f   + ++++ dg++ ++++ + +r+++  ++++ v +   tv+e + + +     ++R ++v++ + +    +++ ++  L   ++t vG+     +sGG+++Rv+ia +++ k++i+++D+at  LD a    +  al ++ e  k t +++i  
  MMETSP1137-20121227|6677_1 494 HFNICNGYNLNIPAGAMCALCGPSGSGKSTI----VGLMERFYDPQAGSLHLDGHNLKDLNvRWLRAQMSLVGQEPVLFSG-TVYENIAYGVLG--NATR-EQVEEAAKTGDAHNFITKV--LADGYDTDVGQGGG-KLSGGQKQRVAIARAMIKKPEILLLDEATSALDNAAEKAVQTALDKIRETKKRT-TITIAH 679
                 56677777777899***************85....577889999999*************725679999999999998865.999998877664..4455.3455555555555555555..78999*****9854.49*******************************997666666665554444433.444433 PP

  == domain 2    score: 31.5 bits;  conditional E-value: 1.3e-10
   TIGR00956   84 ikpgelvvvLGrPgsGcstlLksiasktegfkkgkeskitYdglskeeikkhy.rgdvvYsaetdvHlpsltvketLdfaarlktpqnRvkgvsreeyakkladvvlaiyGLshtkntkvGndlvRG.vsGGerkRvsiaevlvakakiqcwDnatrGLDsatalefvkalktsaeilkatalvaiyqasqdayelFdkvvvlyeGkqiyfGkadk 297 
                  i +g +  + G+ gsG+st++  +    ++f     ++it dg++   ++ ++ r+++  ++++    p+l ++  L+  a+ k  +   ++v++ + a++  +++ +++G    ++t+vG     G +sGG+++Rv+ia + v  + + ++D+at  LD+a    + kal       k t++  ++  s  +    dk+ v+++G+ +  G+ dk
  MMETSP1137-20121227|6677_1 1235 IPAGYVCALCGPSGSGKSTIINLV----QRFYDPSFGSITXDGYEVTKLRVQWlRSQIGLVGQE----PVLFIGTVLENIAQGKIGGATREEVEEAAKAANAYEFITTVLG--DGFDTQVGLGG--GkLSGGQKQRVAIARAXVRXPAVXLLDEATSALDTASERVVQKALDSLMAKRKRTTITIAHRLS--TIRNADKIAVVHKGQVVESGTYDK 1436
                  5678888899*********98865....4566667799**********9987615555555554....88999***********999999************999999988..67899999653..349*********************************999999***9988777777654445544..45667**********999998887 PP

  == domain 3    score: 3.0 bits;  conditional E-value: 0.05
   TIGR00956  778 lLdevdGwvkPGkltALmGasGAGkttLlnvLae 811 
                  + +  + +v  G++ AL G sG Gk t++  L e
  MMETSP1137-20121227|6677_1 1971 ICNGYTLHVPSGQVVALCGPSGSGKSTIIA-LVE 2003
                  55666667888****************984.445 PP

>> TIGR00630  uvra: excinuclease ABC subunit A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.8   0.0    0.0028      0.18     626     650 ..     501     525 ..     482     535 .. 0.87
   2 !   16.6   0.1   5.8e-06   0.00036     821     900 ..     613     690 ..     588     703 .. 0.89
   3 !    7.6   0.0    0.0032       0.2     627     652 ..    1232    1257 ..    1228    1263 .. 0.90
   4 !   15.3   0.0   1.5e-05   0.00093     821     900 ..    1343    1420 ..    1317    1435 .. 0.85
   5 !    7.3   0.0    0.0039      0.24     627     651 ..    1976    2000 ..    1971    2007 .. 0.88

  Alignments for each domain:
  == domain 1    score: 7.8 bits;  conditional E-value: 0.0028
   TIGR00630 626 idvsiplglltvitGvsgsGkstLi 650
                  +++ip g + ++ G+sgsGkst++
  MMETSP1137-20121227|6677_1 501 YNLNIPAGAMCALCGPSGSGKSTIV 525
                 6899*******************97 PP

  == domain 2    score: 16.6 bits;  conditional E-value: 5.8e-06
   TIGR00630 821 klGqpattLsGGeaqrvkLakeLskrstgktlyilDePttGLhfdDikkLlevlqrlvd.kGntvvviehnldviksaDyi 900
                  +Gq    LsGG  qrv +a+ + k+     + +lDe t  L  +  k + + l+++ + k  t + i h l  i+++D i
  MMETSP1137-20121227|6677_1 613 DVGQGGGKLSGGQKQRVAIARAMIKKP---EILLLDEATSALDNAAEKAVQTALDKIREtKKRTTITIAHRLTTIRNSDII 690
                 5899999**************999885...699***********999999999999987256799**************87 PP

  == domain 3    score: 7.6 bits;  conditional E-value: 0.0032
   TIGR00630  627 dvsiplglltvitGvsgsGkstLind 652 
                  +++ip g + ++ G+sgsGkst+in 
  MMETSP1137-20121227|6677_1 1232 NLEIPAGYVCALCGPSGSGKSTIINL 1257
                  789********************985 PP

  == domain 4    score: 15.3 bits;  conditional E-value: 1.5e-05
   TIGR00630  821 klGqpattLsGGeaqrvkLakeLskrstgktlyilDePttGLhfdDikkLlevlqrlvdk.GntvvviehnldviksaDyi 900 
                  ++G     LsGG  qrv +a+      +  ++ +lDe t  L ++  + + + l++l++k   t + i h l  i++aD i
  MMETSP1137-20121227|6677_1 1343 QVGLGGGKLSGGQKQRVAIARAX---VRXPAVXLLDEATSALDTASERVVQKALDSLMAKrKRTTITIAHRLSTIRNADKI 1420
                  56677778************865...567899**************9999999*99987626799**************87 PP

  == domain 5    score: 7.3 bits;  conditional E-value: 0.0039
   TIGR00630  627 dvsiplglltvitGvsgsGkstLin 651 
                  ++++p g+++++ G+sgsGkst+i 
  MMETSP1137-20121227|6677_1 1976 TLHVPSGQVVALCGPSGSGKSTIIA 2000
                  689999***************9985 PP

>> TIGR00455  apsK: adenylylsulfate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.1   0.0    0.0066      0.41      19      58 ..     509     547 ..     500     553 .. 0.80
   2 ?    7.2   0.0     0.013      0.79      18      56 ..    1238    1275 ..    1232    1290 .. 0.78
   3 !   13.1   0.0    0.0002     0.012      17      59 ..    1981    2022 ..    1971    2031 .. 0.84

  Alignments for each domain:
  == domain 1    score: 8.1 bits;  conditional E-value: 0.0066
   TIGR00455  19 vvlWltGlsgsGkstianalekkLeekglrvevLDGDnvr 58 
                  +  l G+sgsGksti   +e ++++    +  LDG n++
  MMETSP1137-20121227|6677_1 509 AMCALCGPSGSGKSTIVGLME-RFYDPQAGSLHLDGHNLK 547
                 566799**********97665.567777788899999976 PP

  == domain 2    score: 7.2 bits;  conditional E-value: 0.013
   TIGR00455   18 svvlWltGlsgsGkstianalekkLeekglrvevLDGDn 56  
                  + v  l G+sgsGksti n ++ ++++ ++ ++  DG +
  MMETSP1137-20121227|6677_1 1238 GYVCALCGPSGSGKSTIINLVQ-RFYDPSFGSITXDGYE 1275
                  678889***********99775.4566666666666655 PP

  == domain 3    score: 13.1 bits;  conditional E-value: 0.0002
   TIGR00455   17 ksvvlWltGlsgsGkstianalekkLeekglrvevLDGDnvrh 59  
                  ++ v+ l G+sgsGksti  al +++++    + +LDG  vr+
  MMETSP1137-20121227|6677_1 1981 SGQVVALCGPSGSGKSTII-ALVERFYDPQEGSVMLDGVDVRT 2022
                  678999************7.666677888888899****9997 PP

>> TIGR02322  phosphon_PhnN: phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   0.0     0.026       1.6       1      21 [.     508     528 ..     508     536 .. 0.86
   2 ?    6.4   0.0     0.023       1.4       3      22 ..    1240    1259 ..    1238    1265 .. 0.84
   3 !    8.4   0.0    0.0055      0.34       1      22 [.    1982    2003 ..    1982    2015 .. 0.85

  Alignments for each domain:
  == domain 1    score: 6.2 bits;  conditional E-value: 0.026
   TIGR02322   1 grlilvvGpsGaGKDtlldla 21 
                 g + ++ GpsG+GK t+++l 
  MMETSP1137-20121227|6677_1 508 GAMCALCGPSGSGKSTIVGLM 528
                 67899***********99865 PP

  == domain 2    score: 6.4 bits;  conditional E-value: 0.023
   TIGR02322    3 lilvvGpsGaGKDtlldlar 22  
                  + ++ GpsG+GK t+++l++
  MMETSP1137-20121227|6677_1 1240 VCALCGPSGSGKSTIINLVQ 1259
                  57899***********9876 PP

  == domain 3    score: 8.4 bits;  conditional E-value: 0.0055
   TIGR02322    1 grlilvvGpsGaGKDtlldlar 22  
                  g+++++ GpsG+GK t+++l+ 
  MMETSP1137-20121227|6677_1 1982 GQVVALCGPSGSGKSTIIALVE 2003
                  78999************99865 PP

>> TIGR03263  guanyl_kin: guanylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   0.0     0.032         2       2      21 ..     509     528 ..     508     537 .. 0.82
   2 ?    7.1   0.0     0.014      0.85       4      23 ..    1241    1260 ..    1238    1271 .. 0.79
   3 ?    6.8   0.0     0.016         1       2      21 ..    1983    2002 ..    1982    2014 .. 0.82

  Alignments for each domain:
  == domain 1    score: 5.8 bits;  conditional E-value: 0.032
   TIGR03263   2 klivisgpsGvGKstlvkkl 21 
                 +++ ++gpsG GKst+v  +
  MMETSP1137-20121227|6677_1 509 AMCALCGPSGSGKSTIVGLM 528
                 57789***********9755 PP

  == domain 2    score: 7.1 bits;  conditional E-value: 0.014
   TIGR03263    4 ivisgpsGvGKstlvkklle 23  
                  + ++gpsG GKst+++ + +
  MMETSP1137-20121227|6677_1 1241 CALCGPSGSGKSTIINLVQR 1260
                  6789***********98876 PP

  == domain 3    score: 6.8 bits;  conditional E-value: 0.016
   TIGR03263    2 klivisgpsGvGKstlvkkl 21  
                  +++ ++gpsG GKst+++ +
  MMETSP1137-20121227|6677_1 1983 QVVALCGPSGSGKSTIIALV 2002
                  67889***********9765 PP

>> TIGR03238  dnd_assoc_3: DNA phosphorothioation-dependent restriction protein DptF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   0.0     0.034       2.1      24      50 ..     500     526 ..     495     546 .. 0.82
   2 ?    5.1   0.0     0.031       1.9      25      50 ..    1231    1256 ..    1226    1265 .. 0.85
   3 !    7.6   0.0    0.0052      0.32      28      50 ..    1978    2000 ..    1967    2014 .. 0.85

  Alignments for each domain:
  == domain 1    score: 4.9 bits;  conditional E-value: 0.034
   TIGR03238  24 klnkelpsselllLCGssGdGkseiLa 50 
                  +n + p++ +  LCG sG Gks i+ 
  MMETSP1137-20121227|6677_1 500 GYNLNIPAGAMCALCGPSGSGKSTIVG 526
                 5788999****************9975 PP

  == domain 2    score: 5.1 bits;  conditional E-value: 0.031
   TIGR03238   25 lnkelpsselllLCGssGdGkseiLa 50  
                  +n e p++ +  LCG sG Gks i++
  MMETSP1137-20121227|6677_1 1231 YNLEIPAGYVCALCGPSGSGKSTIIN 1256
                  6889999****************986 PP

  == domain 3    score: 7.6 bits;  conditional E-value: 0.0052
   TIGR03238   28 elpsselllLCGssGdGkseiLa 50  
                  + ps++++ LCG sG Gks i+a
  MMETSP1137-20121227|6677_1 1978 HVPSGQVVALCGPSGSGKSTIIA 2000
                  6899*****************98 PP

>> TIGR02525  plasmid_TraJ: plasmid transfer ATPase TraJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   0.0     0.026       1.6     146     173 ..     505     532 ..     495     537 .. 0.84
   2 ?    5.2   0.0      0.03       1.9     151     174 ..    1240    1263 ..    1231    1272 .. 0.83
   3 ?    6.8   0.0      0.01      0.63     153     173 ..    1986    2006 ..    1975    2014 .. 0.84

  Alignments for each domain:
  == domain 1    score: 5.4 bits;  conditional E-value: 0.026
   TIGR02525 146 lpkaGlGlicGetGsGkstllaaiyryi 173
                 +p+  +  +cG++GsGkst++  + r++
  MMETSP1137-20121227|6677_1 505 IPAGAMCALCGPSGSGKSTIVGLMERFY 532
                 67888999***********998777776 PP

  == domain 2    score: 5.2 bits;  conditional E-value: 0.03
   TIGR02525  151 lGlicGetGsGkstllaaiyryil 174 
                  +  +cG++GsGkst++  + r++ 
  MMETSP1137-20121227|6677_1 1240 VCALCGPSGSGKSTIINLVQRFYD 1263
                  5568************99999985 PP

  == domain 3    score: 6.8 bits;  conditional E-value: 0.01
   TIGR02525  153 licGetGsGkstllaaiyryi 173 
                   +cG++GsGkst++a + r++
  MMETSP1137-20121227|6677_1 1986 ALCGPSGSGKSTIIALVERFY 2006
                  68**************99998 PP

>> TIGR00235  udk: uridine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.0       0.6        37       7      25 ..     509     527 ..     504     549 .. 0.80
   2 ?    7.5   0.0      0.01      0.63       5      43 ..    1237    1274 ..    1233    1283 .. 0.85
   3 ?    5.3   0.0     0.047       2.9       5      28 ..    1981    2004 ..    1977    2017 .. 0.79

  Alignments for each domain:
  == domain 1    score: 1.7 bits;  conditional E-value: 0.6
   TIGR00235   7 iiigiaGasgsGkttvaek 25 
                  + ++ G sgsGk+t++  
  MMETSP1137-20121227|6677_1 509 AMCALCGPSGSGKSTIVGL 527
                 57899**********9854 PP

  == domain 2    score: 7.5 bits;  conditional E-value: 0.01
   TIGR00235    5 ktiiigiaGasgsGkttvaekivellkkekivlisqDny 43  
                   +++ ++ G sgsGk+t+ + +v+ + +++++ i+ D y
  MMETSP1137-20121227|6677_1 1237 AGYVCALCGPSGSGKSTIIN-LVQRFYDPSFGSITXDGY 1274
                  56899*************96.667777799999999988 PP

  == domain 3    score: 5.3 bits;  conditional E-value: 0.047
   TIGR00235    5 ktiiigiaGasgsGkttvaekive 28  
                  ++ ++++ G sgsGk+t+ + +  
  MMETSP1137-20121227|6677_1 1981 SGQVVALCGPSGSGKSTIIALVER 2004
                  5679*************9976654 PP

>> TIGR00602  rad24: checkpoint protein rad24
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.0      0.11         7     115     129 ..     513     527 ..     507     536 .. 0.85
   2 ?    4.4   0.0     0.036       2.3     114     130 ..    1242    1258 ..    1232    1266 .. 0.83
   3 !    6.4   0.0    0.0091      0.57     109     129 ..    1981    2001 ..    1972    2010 .. 0.82

  Alignments for each domain:
  == domain 1    score: 2.8 bits;  conditional E-value: 0.11
   TIGR00602 115 itGPsGCgKsTviki 129
                 ++GPsG gKsT++  
  MMETSP1137-20121227|6677_1 513 LCGPSGSGKSTIVGL 527
                 8**********9966 PP

  == domain 2    score: 4.4 bits;  conditional E-value: 0.036
   TIGR00602  114 LitGPsGCgKsTvikiL 130 
                   ++GPsG gKsT+i   
  MMETSP1137-20121227|6677_1 1242 ALCGPSGSGKSTIINLV 1258
                  59***********9865 PP

  == domain 3    score: 6.4 bits;  conditional E-value: 0.0091
   TIGR00602  109 kkriLLitGPsGCgKsTviki 129 
                    ++  ++GPsG gKsT+i  
  MMETSP1137-20121227|6677_1 1981 SGQVVALCGPSGSGKSTIIAL 2001
                  568999***********9975 PP

>> TIGR00152  TIGR00152: dephospho-CoA kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.0      0.68        42       3      23 ..     512     532 ..     510     535 .. 0.85
   2 ?    4.9   0.0     0.072       4.5       2      23 ..    1241    1262 ..    1240    1268 .. 0.88
   3 ?    5.1   0.0     0.061       3.8       1      23 [.    1984    2006 ..    1984    2009 .. 0.88

  Alignments for each domain:
  == domain 1    score: 1.7 bits;  conditional E-value: 0.68
   TIGR00152   3 gltGgigsGKstvakilkdky 23 
                 +l G  gsGKst++ +++  y
  MMETSP1137-20121227|6677_1 512 ALCGPSGSGKSTIVGLMERFY 532
                 899**********98887655 PP

  == domain 2    score: 4.9 bits;  conditional E-value: 0.072
   TIGR00152    2 igltGgigsGKstvakilkdky 23  
                   +l G  gsGKst++++++  y
  MMETSP1137-20121227|6677_1 1241 CALCGPSGSGKSTIINLVQRFY 1262
                  699*************998766 PP

  == domain 3    score: 5.1 bits;  conditional E-value: 0.061
   TIGR00152    1 iigltGgigsGKstvakilkdky 23  
                  +++l G  gsGKst++ +++  y
  MMETSP1137-20121227|6677_1 1984 VVALCGPSGSGKSTIIALVERFY 2006
                  79*************99887655 PP

>> TIGR00929  VirB4_CagE: type IV secretion/conjugal transfer ATPase, VirB4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.0      0.42        26     441     455 ..     512     526 ..     506     529 .. 0.86
   2 ?    0.2   0.1      0.56        35     627     665 ..     631     668 ..     630     692 .. 0.87
   3 ?    3.7   0.0      0.05       3.1     441     457 ..    1242    1258 ..    1235    1260 .. 0.90
   4 ?    2.5   0.0      0.12       7.2     440     456 ..    1985    2001 ..    1975    2003 .. 0.84

  Alignments for each domain:
  == domain 1    score: 0.6 bits;  conditional E-value: 0.42
   TIGR00929 441 lIfGptgsGKTvlln 455
                 +++Gp+gsGK++++ 
  MMETSP1137-20121227|6677_1 512 ALCGPSGSGKSTIVG 526
                 789*********985 PP

  == domain 2    score: 0.2 bits;  conditional E-value: 0.56
   TIGR00929 627 ieealdgrrfliiiDEawkllgdpvfeakikeilktlRK 665
                 i +a+ +++ ++++DEa + l++ + e+++++ l  +R+
  MMETSP1137-20121227|6677_1 631 IARAMIKKPEILLLDEATSALDN-AAEKAVQTALDKIRE 668
                 5688999*************987.679999999999986 PP

  == domain 3    score: 3.7 bits;  conditional E-value: 0.05
   TIGR00929  441 lIfGptgsGKTvllnfl 457 
                  +++Gp+gsGK++++n++
  MMETSP1137-20121227|6677_1 1242 ALCGPSGSGKSTIINLV 1258
                  689***********986 PP

  == domain 4    score: 2.5 bits;  conditional E-value: 0.12
   TIGR00929  440 TlIfGptgsGKTvllnf 456 
                  ++++Gp+gsGK++++ +
  MMETSP1137-20121227|6677_1 1985 VALCGPSGSGKSTIIAL 2001
                  579***********986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (2035 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       364  (0.0887372); expected 82.0 (0.02)
Passed bias filter:                      163  (0.0397367); expected 82.0 (0.02)
Passed Vit filter:                        90  (0.0219405); expected 4.1 (0.001)
Passed Fwd filter:                        66  (0.0160897); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              66  [number of targets reported over threshold]
# CPU time: 4.17u 0.25s 00:00:04.42 Elapsed: 00:00:02.17
# Mc/sec: 1237.78
//
Query:       MMETSP1137-20121227|6678_1  [L=266]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (266 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       147  (0.0358362); expected 82.0 (0.02)
Passed bias filter:                      118  (0.0287665); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.14s 00:00:00.37 Elapsed: 00:00:00.38
# Mc/sec: 923.92
//
Query:       MMETSP1137-20121227|6679_1  [L=81]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (81 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       202  (0.0492443); expected 82.0 (0.02)
Passed bias filter:                      145  (0.0353486); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.19s 00:00:00.35 Elapsed: 00:00:00.50
# Mc/sec: 213.82
//
Query:       MMETSP1137-20121227|6680_1  [L=169]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (169 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        54  (0.0131643); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.16s 00:00:00.33 Elapsed: 00:00:00.45
# Mc/sec: 495.69
//
Query:       MMETSP1137-20121227|6681_1  [L=555]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (555 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        50  (0.0121892); expected 82.0 (0.02)
Passed bias filter:                       41  (0.00999512); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.17s 00:00:00.54 Elapsed: 00:00:00.47
# Mc/sec: 1558.59
//
Query:       MMETSP1137-20121227|6682_1  [L=369]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (369 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       134  (0.032667); expected 82.0 (0.02)
Passed bias filter:                      107  (0.0260848); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.17s 00:00:00.47 Elapsed: 00:00:00.37
# Mc/sec: 1316.32
//
Query:       MMETSP1137-20121227|6683_1  [L=689]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   6.4e-185  612.5   1.7   6.4e-185  612.5   1.2    1.5  2  TIGR00263 trpB: tryptophan synthase, beta subunit
    1.1e-70  235.3   0.0    1.8e-70  234.6   0.0    1.3  1  TIGR00262 trpA: tryptophan synthase, alpha subunit
    9.9e-48  160.7   0.4    3.6e-46  155.6   0.2    2.6  1  TIGR01415 trpB_rel: pyridoxal-phosphate dependent TrpB-like enzyme
    3.3e-11   40.4   0.1    5.3e-11   39.7   0.0    1.2  1  TIGR02079 THD1: threonine dehydratase
      4e-08   30.5   0.0    7.4e-05   19.8   0.0    2.3  2  TIGR03945 PLP_SbnA_fam: 2,3-diaminopropionate biosynthesis protein SbnA
    1.4e-07   28.9   0.1     0.0043   14.2   0.1    2.3  2  TIGR01139 cysK: cysteine synthase A
    4.7e-07   27.3   0.0     0.0054   14.0   0.0    2.4  2  TIGR01136 cysKM: cysteine synthases
    1.5e-06   25.8   0.1     0.0065   13.8   0.1    2.5  2  TIGR01138 cysM: cysteine synthase B
      2e-06   24.9   0.5    4.6e-06   23.6   0.4    1.6  1  TIGR02991 ectoine_eutB: ectoine utilization protein EutB
    0.00037   17.4   1.6    0.00037   17.4   1.1    1.9  2  TIGR01127 ilvA_1Cterm: threonine dehydratase
     0.0015   15.9   0.1      0.021   12.1   0.0    2.4  2  TIGR01768 GGGP-family: geranylgeranylglyceryl phosphate synthase family protein


Domain annotation for each model (and alignments):
>> TIGR00263  trpB: tryptophan synthase, beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0       1.4   5.2e+02     252     291 ..     212     251 ..     211     276 .. 0.69
   2 !  612.5   1.2  1.7e-187  6.4e-185       2     384 ..     297     680 ..     296     681 .. 0.99

  Alignments for each domain:
  == domain 1    score: -2.8 bits;  conditional E-value: 1.4
   TIGR00263 252 agGkGidtekhaatlskGkeGvlhGaktkllqdedGqiee 291
                 a G Gi+t  + a++ +   Gv+ G+  +   d+  +++ 
  MMETSP1137-20121227|6683_1 212 AVGFGISTPAQVAEVGSIADGVVVGSAICKAVDDAPDVKG 251
                 5689999999999999999999999988777666544443 PP

  == domain 2    score: 612.5 bits;  conditional E-value: 1.7e-187
   TIGR00263   2 kfgefGGqyvpevllealeelekayekakkdeefkkeleellkeyagrptpltfaknlskklggakiylkredllhtGahkinnalgqallakrlGkkriiaetGaGqhGvatataaallglecevymGaedverqklnvfrmellgakvvpvtsGsktlkdavnealrdWvtsvedthyvlGsavGphPfPeivrefqsvigeevkeqilekegrlPdaviacvGGGsnaiGifaafiedeeveligveagGkGidtekhaatlskGkeGvlhGaktkllqde.dGqieeahsvsaGldypgvgPehaalaetgraeyeaitdeealealkllskeeGiipalesshalaaleklapklkkdeivvvnlsGrGdkdletvaka 384
                 +fg+fGG+yvpe+l+ea +ele+ay  ak+d++f+++++e+  +y g pt+l++ak+l+++ gga+i+lkre+l  tGahkinna+gq lla rlGkkriiaetGaGqhGvatat++allglec+vymGaedv+rq+lnvfrm++lga+v+pv+sGs+tlkda+nea+rdWvt+v++thy++Gsa+GphPfP+ivr+fq++ig+e+++q+le+ grlPd v+acvGGGsnaiG+f+afi d+ev+l+gveagG G+dte+h+atl++G++GvlhG++t+llq++ +Gqi+e+hs+saGldypgvgPeha+l+++gra+y+a++d++ale++k+++ +eGiipal  sha+   +++a+++k d+iv++nl+GrGdkd++tvaka
  MMETSP1137-20121227|6683_1 297 HFGAFGGRYVPETLVEAHRELEEAYAAAKADPAFQAQVKEMRAKYIGGPTALYHAKRLTEHCGGAQIWLKREELAFTGAHKINNAVGQGLLALRLGKKRIIAETGAGQHGVATATVCALLGLECVVYMGAEDVKRQSLNVFRMKMLGATVHPVSSGSATLKDAINEAMRDWVTNVTTTHYLIGSAIGPHPFPTIVRDFQAIIGQEARAQMLEEVGRLPDSVVACVGGGSNAIGMFHAFIPDKEVALVGVEAGGDGMDTERHSATLARGTPGVLHGTRTYLLQNNsTGQINETHSISAGLDYPGVGPEHAWLKDSGRATYVAVDDKQALEGFKTMCAKEGIIPALXPSHAVYXTMQMAKAMKPDQIVLLNLCGRGDKDMHTVAKA 680
                 7*******************************************************************************************************************************************************************************************************************99********************************************************************8637***********************************************************************************************987 PP

>> TIGR00262  trpA: tryptophan synthase, alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  234.6   0.0   4.9e-73   1.8e-70       1     246 [.       9     254 ..       9     264 .. 0.95

  Alignments for each domain:
  == domain 1    score: 234.6 bits;  conditional E-value: 4.9e-73
   TIGR00262   1 fetlkkkeekafvpFvtagdPdleksleiiktlvkaGadalElGvpfsDPlaDGptiqaaelRAlkag..vkvekalellkkvrekasniPivlltyynlifkkgveeFyakakeagvdgvlvaDlPleeaddlleaakkhgvkqiflvaPtaeeerlkkiaekseGfvYlvsvaGvtgarerveeevkelikkvkalskkPvlvGFGiskkeqvkelkelgadgvivGsAlvkiieeklddeekale 246
                 f + ++++  afv F+tag+P+l++++ei+  +++ G+d++ElGvpf DPlaDG tiq+++  Al++   v++e++++ +kk r+k  ++P+vl+ yyn+ ++ g+e  ++++k++gv g +v+DlP ee  +++  a+k++++++ l +Pt+ ++r++++a+ ++ f+Y+vs +Gvtgar+ +  ++ ++i +v+++++ P +vGFGis + qv e+ ++ adgv+vGsA+ k +++  d  + a +
  MMETSP1137-20121227|6683_1   9 FTQAREAGRAAFVGFITAGYPTLDNTVEIMLGMQRGGTDIIELGVPFTDPLADGATIQRTNEIALSSDppVSLEDCIACAKKARSKGLTVPVVLMGYYNPFLAFGLERLMSECKASGVAGFIVVDLPPEEGFEFVSLASKYDLSYVPLLTPTSTNDRIEQLASVANSFMYCVSLTGVTGARSALPVDLGDFISRVRKYTSLPLAVGFGISTPAQVAEVGSI-ADGVVVGSAICKAVDDAPD-VKGAAD 254
                 667889999********************************************************98544899****************************************************************************************************************************************************.99************98855.444444 PP

>> TIGR01415  trpB_rel: pyridoxal-phosphate dependent TrpB-like enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  155.6   0.2   9.5e-49   3.6e-46      63     416 ..     340     681 ..     326     684 .. 0.82

  Alignments for each domain:
  == domain 1    score: 155.6 bits;  conditional E-value: 9.5e-49
   TIGR01415  63 akigrPtPlirakkleellgtkariyyksesvsptGshkintaiaqayyakkeGvkrlvtetGaGqWGsalslaaalldlkvkvfmvrvsfkqkpyrkllmelygaevipsPseltevGrkvlkedpehPGslGlaiseaieealee.edakyslGsvlnh......vllhqtviGleakkql.eeagekPdvivgcvGGGsnfaglafPfvadklsGkedlkfiaaeskaaPkltkGeyrydfgdsagllPllkmytl.....GhdfvppavhagGlryhgvaPtlsllvkkGlveaeaydqeevfeaavlfakaeGivPaPesahaiavaideakkareegkekvilfslsGhGlldlkayeeal 416
                 + ig Pt l+ ak+l e  g+ a+i++k+e+ + tG+hkin a+ q   a + G kr+++etGaGq G a ++ +all+l++ v+m +   k++    + m++ ga v+p  s     G  +lk+          ai ea+ + + +   ++y++Gs +        v  +q++iG ea+ q+ ee+g  Pd +v+cvGGGsn  g+ + f+ dk     ++ ++ +e+      t+ +       + g+l   + y l     G+    +++ ++Gl y gv P  + l   G     a+d ++++e  ++++  eGi+Pa   +ha+   ++ ak ++ +   +++l++l G G  d+++ ++a+
  MMETSP1137-20121227|6683_1 340 KYIGGPTALYHAKRLTEHCGG-AQIWLKREELAFTGAHKINNAVGQGLLALRLGKKRIIAETGAGQHGVATATVCALLGLECVVYMGAEDVKRQSLNVFRMKMLGATVHPVSS-----GSATLKD----------AINEAMRDWVTNvTTTHYLIGSAIGPhpfptiVRDFQAIIGQEARAQMlEEVGRLPDSVVACVGGGSNAIGMFHAFIPDK-----EVALVGVEAGGDGMDTERHSATLARGTPGVLHGTRTYLLqnnstGQIN-ETHSISAGLDYPGVGPEHAWLKDSGRATYVAVDDKQALEGFKTMCAKEGIIPALXPSHAVYXTMQMAKAMKPD---QIVLLNLCGRGDKDMHTVAKAM 681
                 45899************9986.89*************************************************************************************9877.....5555554..........99****99887625689******9642222214459*********9975899**************************97.....334444444443333443333334444444444444444000005443.34455789***********************************************************999988...7*************99998876 PP

>> TIGR02079  THD1: threonine dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.7   0.0   1.4e-13   5.3e-11      13     206 ..     342     549 ..     332     566 .. 0.77

  Alignments for each domain:
  == domain 1    score: 39.7 bits;  conditional E-value: 1.4e-13
   TIGR02079  13 vvketPlqknerlseky.kaeiylkredlqevrsyklrGaynklkqlsdeelekgvvcasaGnhaqGvayacrklgvkgtvfmPvttPkqk...vdkvklfGgefievilvGdtfdeaaaaakkavek...egktl....ipPfddkdiie.Gqgtvaveileqleee...kidlvlvpvGGGGlisGvtsylkekskktkiigvePeG 206
                 +  +t l + +rl+e+  +a+i+lkre+l    ++k+  a  +       ++++ +  + aG h    a  c  lg++ +v+m +   k++   v ++k+ G     v     t  +a  +a+++  +   + ++l    i P   ++i+   q+ ++ e   q+ ee    +d v++ vGGG  + G+   +    k+ +++gve  G
  MMETSP1137-20121227|6683_1 342 IGGPTALYHAKRLTEHCgGAQIWLKREELAFTGAHKINNAVGQGLLALRLGKKRIIAETGAGQHGVATATVCALLGLECVVYMGAEDVKRQslnVFRMKMLGATVHPVSSGSATLKDAINEAMRDWVTnvtTTHYLigsaIGPHPFPTIVRdFQAIIGQEARAQMLEEvgrLPDSVVACVGGGSNAIGMFHAFIP-DKEVALVGVEAGG 549
                 55678999999999986369********************9876555567888999999************************9987664322266999****9999999999999999999987433111233332222667777777751588888888888777666569**********999998766654.3566889999766 PP

>> TIGR03945  PLP_SbnA_fam: 2,3-diaminopropionate biosynthesis protein SbnA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   0.0     2e-07   7.4e-05      21     112 ..     360     451 ..     343     477 .. 0.85
   2 !    8.5   0.0   0.00055      0.21     226     298 ..     605     677 ..     562     681 .. 0.90

  Alignments for each domain:
  == domain 1    score: 19.8 bits;  conditional E-value: 2e-07
   TIGR03945  21 kvelfaKlEglnpagSvKdrtAlallekaikegeikpgttiiESsSGnlaiaLamvcaalGlkficvv...Dpkiseanlkllralgaevevvee 112
                  +++++K E l  +g  K   A   + + +   ++ ++  i E   G  ++a a+vca lGl+ ++ +   D k ++ n+  +++lga+v+ v++
  MMETSP1137-20121227|6683_1 360 GAQIWLKREELAFTGAHKINNA---VGQGLLALRLGKKRIIAETGAGQHGVATATVCALLGLECVVYMgaeDVKRQSLNVFRMKMLGATVHPVSS 451
                 46799*************9998...579999999****************************9877554448888899999999******99986 PP

  == domain 2    score: 8.5 bits;  conditional E-value: 0.00055
   TIGR03945 226 elldeslidevvkvseletvaacrelleregilaGgSsGtvvaavkkllakieegstvvailpDrGerYldtv 298
                   l++s   ++v v++ +++ + ++++++egi+       +v+   ++++ +++++ v++ l+ rG++ + tv
  MMETSP1137-20121227|6683_1 605 AWLKDSGRATYVAVDDKQALEGFKTMCAKEGIIPALXPSHAVYXTMQMAKAMKPDQIVLLNLCGRGDKDMHTV 677
                 5678889999***********************99998888889999********************999988 PP

>> TIGR01139  cysK: cysteine synthase A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.1   1.2e-05    0.0043      45     179 ..     378     529 ..     353     550 .. 0.65
   2 !   12.4   0.0   4.1e-05     0.015     235     293 ..     616     674 ..     599     678 .. 0.91

  Alignments for each domain:
  == domain 1    score: 14.2 bits;  conditional E-value: 1.2e-05
   TIGR01139  45 iedaekegllk....kgktiveatsGntGialamvaaargykliltmpet.mslerrkl..lkayGaelv.Ltdgaegmkgaiekaee..lveetpnkylllkqfenpanpei...hrkttapeilkdldgkl....dafvagvGtGGtitG 179
                 i++a  +gll     k + i e+ +G  G+a a v+a  g++ ++ m +  +     ++  +k++Ga +  +  g+   k ai++a    +++ t  +yl+ +       p+i    ++  ++e   ++ +++    d +va vG G    G
  MMETSP1137-20121227|6683_1 378 INNAVGQGLLAlrlgKKRIIAETGAGQHGVATATVCALLGLECVVYMGAEdVKRQSLNVfrMKMLGATVHpVSSGSATLKDAINEAMRdwVTNVTTTHYLIGSAIGPHPFPTIvrdFQAIIGQEARAQMLEEVgrlpDSVVACVGGGSNAIG 529
                 5555555554311115567889999**********************765144444444557899**99747789999999*9999532244555566666565554444444111344455565555544432223666777776665555 PP

  == domain 2    score: 12.4 bits;  conditional E-value: 4.1e-05
   TIGR01139 235 ikvsdeeaietarrlakeeGilvGissGaavaaalkvakklekdkkivvilpdtgerYl 293
                 ++v+d +a+e  + + ++eGi+  +    av+  +++ak +++d+ ++  l+  g++ +
  MMETSP1137-20121227|6683_1 616 VAVDDKQALEGFKTMCAKEGIIPALXPSHAVYXTMQMAKAMKPDQIVLLNLCGRGDKDM 674
                 7899*******************************************999999888766 PP

>> TIGR01136  cysKM: cysteine synthases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.0   1.4e-05    0.0054      21     122 ..     361     463 ..     339     487 .. 0.67
   2 !   10.7   0.0   0.00014     0.051     234     296 ..     615     676 ..     601     678 .. 0.91

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 1.4e-05
   TIGR01136  21 aevlvKlEsrnPsgSvKdRialsmildAekrgllkkgktiieatSGNtGiaLAmvaaakgyklilvmpetmslERrkl....lkayGaelv.lteaeegmkgaieka 122
                 a++++K E+   +g+ K   a+   l A     l k++ i e+ +G  G+a A v+a  g++ ++ m ++    R++l    +k++Ga +  +++++   k ai++a
  MMETSP1137-20121227|6683_1 361 AQIWLKREELAFTGAHKINNAVGQGLLA---LRLGKKRIIAETGAGQHGVATATVCALLGLECVVYMGAEDV-KRQSLnvfrMKMLGATVHpVSSGSATLKDAINEA 463
                 5666666666666655555554433333...3455677889999***********************87643.3443323447888998863455566666777666 PP

  == domain 2    score: 10.7 bits;  conditional E-value: 0.00014
   TIGR01136 234 vikvededaietarrlakeegilvGiSsGaavaaalkvakklekedkkivvilpdagerYLst 296
                  ++v+d++a+e  + + ++egi+  +    av+ ++++ak ++ +d+ +++ l+ +g++ + t
  MMETSP1137-20121227|6683_1 615 YVAVDDKQALEGFKTMCAKEGIIPALXPSHAVYXTMQMAKAMK-PDQIVLLNLCGRGDKDMHT 676
                 6899*************************************98.899999999*999997765 PP

>> TIGR01138  cysM: cysteine synthase B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.1   1.8e-05    0.0065       7     104 ..     344     437 ..     339     470 .. 0.79
   2 !    9.3   0.0   0.00042      0.16     227     287 ..     615     676 ..     562     678 .. 0.87

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 1.8e-05
   TIGR01138   7 Gntplvrlkrllpe.edsevlvklegnnpaGsvkdrpalsmiveaekrGeikeGdvlieatsGntGialamvaalkGykvkllmpdnvseerkaalkay 104
                 G t l + krl+ +  ++++++k e    +G+ k   a+   + a++ G+     ++ e+ +G  G+a a v+al+G++  + m ++  +  ++ l+ +
  MMETSP1137-20121227|6683_1 344 GPTALYHAKRLTEHcGGAQIWLKREELAFTGAHKINNAVGQGLLALRLGKK---RIIAETGAGQHGVATATVCALLGLECVVYMGAEDVK--RQSLNVF 437
                 678999999999887789***********************9999999975...5899999*******************9999876443..3333333 PP

  == domain 2    score: 9.3 bits;  conditional E-value: 0.00042
   TIGR01138 227 vvdveqedaediarelakkegifvGvssGgavaaalrlarele.kavvvaiicdrGdrylst 287
                  v v+ ++a +  + +  kegi        av+ ++++a++++ + +v+  +c rGd+ + t
  MMETSP1137-20121227|6683_1 615 YVAVDDKQALEGFKTMCAKEGIIPALXPSHAVYXTMQMAKAMKpDQIVLLNLCGRGDKDMHT 676
                 577899999999****************************98625777788******98765 PP

>> TIGR02991  ectoine_eutB: ectoine utilization protein EutB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.6   0.4   1.2e-08   4.6e-06      20     179 ..     346     524 ..     332     570 .. 0.65

  Alignments for each domain:
  == domain 1    score: 23.6 bits;  conditional E-value: 1.2e-08
   TIGR02991  20 tplveseslsellG.vpvllklesrqttGsfklrGatn.avlslsdaeraaGvvaastGnhGralayaakkegvravicms.elvpqnkvd..eirrlGaevrivGrsq...ddaqeever.....lvkerGlv..mlppfdhadivaG.qGtlgle....vveqvpdlalvlvplsGGG 179
                 t l +++ l+e +G  ++ lk e+   tG+ k+  a+   +l+l  ++++  +  + +G+hG a a   +  g+++v+ m  e v  + ++   +++lGa v+ v        da +e  r     ++  + l+  ++ p   + iv   q  +g e    ++e+v  l   +v   GGG
  MMETSP1137-20121227|6683_1 346 TALYHAKRLTEHCGgAQIWLKREELAFTGAHKINNAVGqGLLALRLGKKR-IIAETGAGQHGVATATVCALLGLECVVYMGaEDVKRQSLNvfRMKMLGATVHPVSSGSatlKDAINEAMRdwvtnVTTTHYLIgsAIGPHPFPTIVRDfQAIIGQEaraqMLEEVGRLPDSVVACVGGG 524
                 56777889999996389*****************9985267888777665.5777889**********************625687777661155679*****99654311245555543321111333333433356666666666432555555422224444444444444444444 PP

>> TIGR01127  ilvA_1Cterm: threonine dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.0   0.0       3.2   1.2e+03     199     213 ..     221     235 ..     217     238 .. 0.81
   2 !   17.4   1.1     1e-06   0.00037       1     184 [.     346     548 ..     346     573 .. 0.72

  Alignments for each domain:
  == domain 1    score: -4.0 bits;  conditional E-value: 3.2
   TIGR01127 199 kavesvktiaDGiav 213
                  +v +v +iaDG++v
  MMETSP1137-20121227|6683_1 221 AQVAEVGSIADGVVV 235
                 67888999****998 PP

  == domain 2    score: 17.4 bits;  conditional E-value: 1e-06
   TIGR01127   1 tpleksstlsdit.gaevylklenlqktGsfkirGalnkiaklseeekkrGvvaasaGnhaqGvalaakvfgikakivmPesap...lskvkatksyGaev..iLhGa.dfDeayklaee..laeeegrvfv.......haf....dDefviaGqGtlgleiledlpdv.dtvivPvGGGGLisGvasavkklnpevkviGveae 184
                 t+l +++ l++ + ga+++lk e l  tG++ki  a+ +   ++  +kkr +    aG h    a      g+++++ m    +      v   k +Ga v  +  G+ ++ +a + a +  + + + + ++       h+f     D   i Gq +   ++le+++ + d v++ vGGG    G+  a      ev ++Gvea 
  MMETSP1137-20121227|6683_1 346 TALYHAKRLTEHCgGAQIWLKREELAFTGAHKINNAVGQGLLALRLGKKRIIAETGAGQHGVATATVCALLGLECVVYMGAEDVkrqSLNVFRMKMLGATVhpVSSGSaTLKDAINEAMRdwVTNVTTTHYLigsaigpHPFptivRDFQAIIGQEAR-AQMLEEVGRLpDSVVACVGGGSNAIGMFHAFIP-DKEVALVGVEAG 548
                 67777888888773589*********************999999999999999999****8888888999*********86554111456888999***99667777525677776665422333333333224444556663222344555555443.346777777768999999999988888877654.457888888875 PP

>> TIGR01768  GGGP-family: geranylgeranylglyceryl phosphate synthase family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.1   0.0   5.7e-05     0.021     168     215 ..     198     243 ..     161     249 .. 0.83
   2 ?    0.7   0.0      0.19        69     161     188 ..     498     525 ..     460     543 .. 0.89

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 5.7e-05
   TIGR01768 168 elvaevkkvldkvkLivGGGirsvEkArklaeagADvvvvGnvieedd 215
                 + ++ v+k  ++ +L vG Gi ++ + +++ +  AD vvvG  i + +
  MMETSP1137-20121227|6683_1 198 DFISRVRK-YTSLPLAVGFGISTPAQVAEVGS-IADGVVVGSAICKAV 243
                 56888999.5599****************998.********9998764 PP

  == domain 2    score: 0.7 bits;  conditional E-value: 0.19
   TIGR01768 161 apepvppelvaevkkvldkvkLivGGGi 188
                 ++++ + ++++ev ++ d+v   vGGG 
  MMETSP1137-20121227|6683_1 498 IGQEARAQMLEEVGRLPDSVVACVGGGS 525
                 6778899*******************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (689 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       139  (0.0338859); expected 82.0 (0.02)
Passed bias filter:                      106  (0.0258411); expected 82.0 (0.02)
Passed Vit filter:                        22  (0.00536324); expected 4.1 (0.001)
Passed Fwd filter:                        11  (0.00268162); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.58u 0.14s 00:00:00.72 Elapsed: 00:00:00.63
# Mc/sec: 1443.50
//
Query:       MMETSP1137-20121227|6684_1  [L=358]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (358 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       120  (0.029254); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.11s 00:00:00.37 Elapsed: 00:00:00.48
# Mc/sec: 984.42
//
Query:       MMETSP1137-20121227|6685_1  [L=598]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (598 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        69  (0.0168211); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.17s 00:00:00.56 Elapsed: 00:00:00.37
# Mc/sec: 2133.23
//
Query:       MMETSP1137-20121227|6686_1  [L=815]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.02   10.7   0.0      0.038    9.8   0.0    1.4  1  TIGR00870 trp: transient-receptor-potential calcium channel protein


Domain annotation for each model (and alignments):
>> TIGR00870  trp: transient-receptor-potential calcium channel protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.0   9.3e-06     0.038     129     218 ..     382     481 ..     365     489 .. 0.89

  Alignments for each domain:
  == domain 1    score: 9.8 bits;  conditional E-value: 9.3e-06
   TIGR00870 129 tkgitalilAihkqnyeivklLlekgasve............arakgdefvksqekdslyhgespLnlaaclasesivsllsedpAdiltadslgntllhll 218
                  +g t +  A++ +n+ +v++Llekg  v             +r  g+  v++    ++  g   L   +  ++e +++ll +++Ad++ +d +g t+lh +
  MMETSP1137-20121227|6686_1 382 EAGFTLMRYAVMSDNLVVVRALLEKGEVVDlsqplvkddkvsMRSRGSTLVHEAA-RCFDGGAQSLV-QKYGSAETMLELLHRFGADLSERDAIGCTVLHYA 481
                 567788888*****************999999******************99999.9***9999885.455567889**********************976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (815 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        92  (0.0224281); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.17s 00:00:00.66 Elapsed: 00:00:00.56
# Mc/sec: 1920.91
//
Query:       MMETSP1137-20121227|6687_1  [L=414]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.6e-21   74.1   0.0    2.1e-21   73.7   0.0    1.1  1  TIGR02440 FadJ: fatty oxidation complex, alpha subunit FadJ
    1.1e-18   64.5   0.0    1.4e-18   64.1   0.0    1.1  1  TIGR02441 fa_ox_alpha_mit: fatty acid oxidation complex, alpha subunit, mitochondrial
    4.7e-16   56.1   0.0    6.3e-16   55.7   0.0    1.1  1  TIGR02437 FadB: fatty oxidation complex, alpha subunit FadB
    3.9e-13   47.1   0.0    5.4e-13   46.7   0.0    1.1  1  TIGR03210 badI: 2-ketocyclohexanecarboxyl-CoA hydrolase
    7.1e-12   43.2   0.3    9.8e-12   42.7   0.2    1.2  1  TIGR02280 PaaB1: phenylacetate degradation probable enoyl-CoA hydratase PaaB
    7.4e-12   43.2   0.0    9.8e-12   42.8   0.0    1.1  1  TIGR01929 menB: naphthoate synthase
    4.4e-06   23.5   0.0    5.9e-06   23.1   0.0    1.2  1  TIGR03222 benzo_boxC: benzoyl-CoA-dihydrodiol lyase


Domain annotation for each model (and alignments):
>> TIGR02440  FadJ: fatty oxidation complex, alpha subunit FadJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.7   0.0   3.7e-24   2.1e-21       6     196 ..      64     253 ..      60     276 .. 0.90

  Alignments for each domain:
  == domain 1    score: 73.7 bits;  conditional E-value: 3.7e-24
   TIGR02440   6 vredniailtidvpgeklntlkaefadqvaeilkqlkekkelrglvlvsgkpdsfiagadismlaacktadeakalaqkgqellaelealpikvvaaihgaclggglelalachsrvcsdddktvlglpevqlgllpgsggtqrlprlvgvskaldmiltgkqlrakqalklglvddvvpksilldvavel 196
                 v+ ++ a+  ++ ++  +n+l  e++ ++++++++l +++ + g++l s+ p  f ag d++ +      d a+      qe+   l +  +  vaa+ g    gg  lal+c +rv  d  k ++gl e q+g++     +  l  + gv +a  m+l g  + +++al  g+vd+v p   l  +a+++
  MMETSP1137-20121227|6687_1  64 VHREKEAMAAVQFSSPPVNALSLELCRELTSVIAELDADPAIDGILLGSAVPGIFSAGLDLRAFHGASEDDLAEYW-TAVQEMWLTLYTTRLATVAAVNGHAPAGGCMLALSCDERVMVDSAKYRIGLSETQVGIVAPPWLASLLVDVTGVRRAYRMLLLGELVDPQEALARGIVDEVAPLYQLYGAAERR 253
                 55666677778888889*********************************************99988776666665.567899999***********************************************************************************************9999888776 PP

>> TIGR02441  fa_ox_alpha_mit: fatty acid oxidation complex, alpha subunit, mitochondrial
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.1   0.0   2.5e-21   1.4e-18      19     209 ..      67     253 ..      53     277 .. 0.89

  Alignments for each domain:
  == domain 1    score: 64.1 bits;  conditional E-value: 2.5e-21
   TIGR02441  19 vkgdvavvkidspnskvntlskelsaefkevldeletneavksavlisskpgsfvaGadidmlkacktaeevtqlsreaqklleklekskkpivaaisGsclGGGlelalachyriatkdkktllglpevllGllpGaGgtqrlpklvsvpaaldleltGkkikadrakklGlvdrlvdplGpGlkpaeer 209
                  k+ +a v++ sp   vn+ls el  e+++v+ el +++a+  ++l s+ pg f aG d+  ++      +  +     q++   l  ++   vaa++G    GG  lal+c+ r+ ++  k  +gl e  +G++     +  l  +++v+ a+ + l G  +  + a   G+vd++  pl +  + ae+r
  MMETSP1137-20121227|6687_1  67 EKEAMAAVQFSSPP--VNALSLELCRELTSVIAELDADPAIDGILLGSAVPGIFSAGLDLRAFHGASED-DLAEYWTAVQEMWLTLYTTRLATVAAVNGHAPAGGCMLALSCDERVMVDSAKYRIGLSETQVGIVAPPWLASLLVDVTGVRRAYRMLLLGELVDPQEALARGIVDEV-APLYQLYGAAERR 253
                 46678889999985..9******************************************9999876654.455566789*********************************************************99*************************************95.6887655555554 PP

>> TIGR02437  FadB: fatty oxidation complex, alpha subunit FadB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.7   0.0   1.1e-18   6.3e-16       7     203 ..      61     256 ..      58     281 .. 0.88

  Alignments for each domain:
  == domain 1    score: 55.7 bits;  conditional E-value: 1.1e-18
   TIGR02437   7 tlqvelledgiaelvfdapgsvnkldratlasldkaldalkaqsdlkgllltsdk.dafivGaditeflelfakpeeellqwleeansvfnkledlpvptvaavkGfalGGGlevvlatdfriadktak..iGlpetklGilpGfGGtvrlprliGadsaleiiaaGkevraedalkvglvdavvkaekleaaalqllkd 203
                 +l v+  ++++a + f+ p  vn l  +   +l   +  l+a+  + g+ll s    +f  G d+  f +     e++l ++ +  ++++  l    + tvaav+G+a  GG+ + l++d r++ ++ak  iGl et++Gi+     +  l  + G+  a  ++  G+ v  ++al  g+vd v    +l+ aa   l  
  MMETSP1137-20121227|6687_1  61 SLVVHREKEAMAAVQFSSP-PVNALSLELCRELTSVIAELDADPAIDGILLGSAVpGIFSAGLDLRAFHGA---SEDDLAEYWTAVQEMWLTLYTTRLATVAAVNGHAPAGGCMLALSCDERVMVDSAKyrIGLSETQVGIVAPPWLASLLVDVTGVRRAYRMLLLGELVDPQEALARGIVDEVAPLYQLYGAAERRLST 256
                 6778888899999999988.69*****************************998626899*****999875...677788888889999***********************************9987444**********977777778999********************************999999999877655 PP

>> TIGR03210  badI: 2-ketocyclohexanecarboxyl-CoA hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.7   0.0   9.1e-16   5.4e-13       9     211 ..      68     272 ..      61     280 .. 0.85

  Alignments for each domain:
  == domain 1    score: 46.7 bits;  conditional E-value: 9.1e-16
   TIGR03210   9 rngvatiiinraeklnafrgrtcdelikalkkagydreigvivlagagdkafctggdqsthdgn.ydgrgviglpveelhsairdvakpviarvqgyaigggnvlvticd..ltiasekavlgqvgpkvgsvdpgygtallarvvgekkareiwylcrrysakealamglvnavvphdqldaevkkwcdeiveksptalaiakrsf 211
                 ++ +a +    +  +na+  + c el   + + + d  i  i+l  a    f +g d  + +g   d        v+e+  ++       +a v+g+a  gg +l+  cd  + + s k  +g    +vg v p + ++ll  v g ++a  +  l      +eala g+v+ v p  ql    ++    +++    a + +k+ f
  MMETSP1137-20121227|6687_1  68 KEAMAAVQFSSP-PVNALSLELCRELTSVIAELDADPAIDGILLGSAVPGIFSAGLDLRAFHGAsEDDLAEYWTAVQEMWLTLYTTRLATVAAVNGHAPAGGCMLALSCDerVMVDSAKYRIGLSETQVGIVAPPWLASLLVDVTGVRRAYRMLLLGELVDPQEALARGIVDEVAPLYQLYGAAERRLSTLLQVPSQARSATKQQF 272
                 455555555544.589*****************************************98877761567788999************************************334455778889*******************************************************99987777776666666555655555555 PP

>> TIGR02280  PaaB1: phenylacetate degradation probable enoyl-CoA hydratase PaaB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.7   0.2   1.7e-14   9.8e-12      20     222 ..      81     284 ..      63     313 .. 0.84

  Alignments for each domain:
  == domain 1    score: 42.7 bits;  conditional E-value: 1.7e-14
   TIGR02280  20 lnsfteemhaelaealerverdd.vrallltGaGrG.fcaGqdlsernvtkg.aapdlGetvekfynplvrrlaalpkpvvvavnGvaaGaGanlalagdivlaaesakfiqaf..aklGlipdsGGtwllprlvGrarakglallgekldaetaaewGliwqvvddealadevqalaahlakqptrglalikralqaaetnsldtql 222
                 +n+++ e+ +el+  + +++ d  +  +ll  a  G f+aG dl   +  ++ + ++  ++v++++      l +  +  v+avnG a   G  lal++d  +  +sak+   +  +++G++     + ll  + G+ ra  + llge +d ++a + G++ +v    +l  +++   + l + p+++ +++k+ ++ a++++l ++ 
  MMETSP1137-20121227|6687_1  81 VNALSLELCRELTSVIAELDADPaIDGILLGSAVPGiFSAGLDLRAFHGASEdDLAEYWTAVQEMWLT----LYTTRLATVAAVNGHAPAGGCMLALSCDERVMVDSAKYRIGLseTQVGIVAPPWLASLLVDVTGVRRAYRMLLLGELVDPQEALARGIVDEVAPLYQLYGAAERRLSTLLQVPSQARSATKQQFRRASADALRDRQ 284
                 799999999************99899999999998879******887765543677777777777655....45667789*****************************9876522689***9999999***********************************************99******************999999885433 PP

>> TIGR01929  menB: naphthoate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.8   0.0   1.7e-14   9.8e-12       6     215 ..      64     273 ..      60     291 .. 0.88

  Alignments for each domain:
  == domain 1    score: 42.8 bits;  conditional E-value: 1.7e-14
   TIGR01929   6 yeksedaiakiaidrpkvrnafrpktvdellealddaredsdiGvviltGaGdkafcsGGdqkvrgksG.ykdesGesrlnvlevqrlirtlpkpvialvnGyaiGGGhvlhvvcdltiasena..rfgqtgpkvGsfdgGyGsaylarivGqkkareifflcrqydaeeaekmGlvnavvelaeleketvewareilaksplalrllkaaln 215
                  +++++a+a + ++ p v na+  +   el +++++   d+ i  ++l  a    f +G d   r+ +G  +d+  e    v e+  ++ t   + +a vnG+a  GG +l + cd  +  + a  r+g ++++vG     + ++ l  + G ++a  + +l+   d +ea + G+v+ v +l +l  ++ +   ++l+   +a    k+ + 
  MMETSP1137-20121227|6687_1  64 VHREKEAMAAVQFSSPPV-NALSLELCRELTSVIAELDADPAIDGILLGSAVPGIFSAGLDL--RAFHGaSEDDLAEYWTAVQEMWLTLYTTRLATVAAVNGHAPAGGCMLALSCDERVMVDSAkyRIGLSETQVGIVAPPWLASLLVDVTGVRRAYRMLLLGELVDPQEALARGIVDEVAPLYQLYGAAERRLSTLLQVPSQARSATKQQFR 273
                 577899**********98.9***************************************995..56666367788889999***********************************88887766226789********************************************************999999888888887787777777664 PP

>> TIGR03222  benzo_boxC: benzoyl-CoA-dihydrodiol lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.1   0.0     1e-08   5.9e-06      64     211 ..     102     242 ..      78     288 .. 0.72

  Alignments for each domain:
  == domain 1    score: 23.1 bits;  conditional E-value: 1e-08
   TIGR03222  64 hpevrvvvltsakdkvfcaGanikmlglsthahkvnfckftnetrngiedaseesglkflaavnGtaaGGGyelalacdeivlvddrssavslpevpllavlpGtGGltrvtdkrrvrrdladifctieeGvkGkrakewrlvdevvk 211
                  p++  ++l sa + +f aG +++ + +++     ++    +e   ++     +++l  +aavnG a  GG  lal+cde v+vd ++  + l e  +  v p     + ++d   vrr    +   + e v  + a    +vdev +
  MMETSP1137-20121227|6687_1 102 DPAIDGILLGSAVPGIFSAGLDLRAFHGASEDDLAEYWTAVQEMWLTL----YTTRLATVAAVNGHAPAGGCMLALSCDERVMVDSAKYRIGLSETQVGIVAPPWL-ASLLVDVTGVRRAYRML--LLGELVDPQEALARGIVDEVAP 242
                 588888888888888888888888888888877777777777666555....4678999***********************************998877776532.23345555555544333..3455555666666666666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (414 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       130  (0.0316919); expected 82.0 (0.02)
Passed bias filter:                      104  (0.0253535); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.39u 0.13s 00:00:00.52 Elapsed: 00:00:00.51
# Mc/sec: 1071.44
//
Query:       MMETSP1137-20121227|6688_1  [L=312]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (312 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       117  (0.0285227); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.18s 00:00:00.42 Elapsed: 00:00:00.40
# Mc/sec: 1029.51
//
Query:       MMETSP1137-20121227|6689_1  [L=204]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00048   17.6   1.0    0.00074   17.0   0.7    1.3  1  TIGR01053 LSD1: zinc finger domain, LSD1 subclass
     0.0011   16.4   2.8        0.1   10.2   0.2    2.3  2  TIGR02098 MJ0042_CXXC: MJ0042 family finger-like domain
     0.0081   13.9   0.0      0.016   12.9   0.0    1.5  1  TIGR01206 lysW: lysine biosynthesis protein LysW


Domain annotation for each model (and alignments):
>> TIGR01053  LSD1: zinc finger domain, LSD1 subclass
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.7   5.4e-07   0.00074       1      28 [.       9      38 ..       9      41 .. 0.91

  Alignments for each domain:
  == domain 1    score: 17.0 bits;  conditional E-value: 5.4e-07
   TIGR01053  1 lvvCsgCRtlLm..yprGAssvRCalCqtv 28
                +v C +C   L+  +p G +sv C+ C++v
  MMETSP1137-20121227|6689_1  9 QVTCPSCAAHLQvrLPEGITSVQCSECKAV 38
                899*******98779*************98 PP

>> TIGR02098  MJ0042_CXXC: MJ0042 family finger-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.4   0.1    0.0012       1.6       2      11 ..       9      18 ..       8      23 .. 0.80
   2 !   10.2   0.2   7.4e-05       0.1       3      15 ..      30      42 ..      28      47 .. 0.88

  Alignments for each domain:
  == domain 1    score: 6.4 bits;  conditional E-value: 0.0012
   TIGR02098  2 riqCPnCkts 11
                 ++CP+C++ 
  MMETSP1137-20121227|6689_1  9 QVTCPSCAAH 18
                689****996 PP

  == domain 2    score: 10.2 bits;  conditional E-value: 7.4e-05
   TIGR02098  3 iqCPnCktsyrVd 15
                +qC +Ck++++V+
  MMETSP1137-20121227|6689_1 30 VQCSECKAVFAVQ 42
                79*******9995 PP

>> TIGR01206  lysW: lysine biosynthesis protein LysW
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.9   0.0   1.2e-05     0.016       2      42 ..       9      48 ..       8      55 .. 0.87

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 1.2e-05
   TIGR01206  2 kaecPecGAeieLeNpELgelVvceecGaElEVVsldPlrL 42
                + +cP c A +++  pE    V c ec a +  V ++P  L
  MMETSP1137-20121227|6689_1  9 QVTCPSCAAHLQVRLPEGITSVQCSECKAVFA-VQIQPTAL 48
                789************************99875.57888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (204 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       107  (0.0260848); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.19u 0.14s 00:00:00.33 Elapsed: 00:00:00.37
# Mc/sec: 727.72
//
Query:       MMETSP1137-20121227|6690_1  [L=276]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.5e-11   39.4   0.0    1.9e-10   38.2   0.0    1.5  2  TIGR01934 MenG_MenH_UbiE: ubiquinone/menaquinone biosynthesis methyltransferase
    3.2e-07   28.2   0.0    5.2e-07   27.5   0.0    1.3  1  TIGR02072 BioC: biotin biosynthesis protein BioC
    2.1e-06   25.1   0.0      3e-06   24.5   0.0    1.2  1  TIGR01983 UbiG: 3-demethylubiquinone-9 3-O-methyltransferase
      4e-05   21.2   0.0    5.9e-05   20.7   0.0    1.3  1  TIGR00537 hemK_rel_arch: putative methylase
    0.00033   18.0   0.0    0.00065   17.1   0.0    1.4  1  TIGR03534 RF_mod_PrmC: protein-(glutamine-N5) methyltransferase, release factor-specific
     0.0013   15.7   0.0     0.0024   14.8   0.0    1.4  1  TIGR00536 hemK_fam: methyltransferase, HemK family
     0.0018   15.6   0.0     0.0025   15.1   0.0    1.1  1  TIGR02021 BchM-ChlM: magnesium protoporphyrin O-methyltransferase
     0.0042   15.2   0.0     0.0073   14.4   0.0    1.3  1  TIGR02469 CbiT: precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit
  ------ inclusion threshold ------
      0.017   11.5   0.0      0.023   11.0   0.0    1.1  1  TIGR04074 bacter_Hen1: 3' terminal RNA ribose 2'-O-methyltransferase Hen1
      0.019   12.1   0.0       0.03   11.4   0.0    1.2  1  TIGR00417 speE: spermidine synthase
      0.019   12.1   0.0      0.026   11.6   0.0    1.2  1  TIGR00755 ksgA: dimethyladenosine transferase


Domain annotation for each model (and alignments):
>> TIGR01934  MenG_MenH_UbiE: ubiquinone/menaquinone biosynthesis methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.2   0.0   5.1e-13   1.9e-10      36     147 ..      47     159 ..      31     169 .. 0.85
   2 ?   -2.6   0.0       1.5   5.8e+02     105     119 ..     210     224 ..     175     233 .. 0.69

  Alignments for each domain:
  == domain 1    score: 38.2 bits;  conditional E-value: 5.1e-13
   TIGR01934  36 eeekeekvlDvatGtGdlaielakkae.akvtgvDlseemLevakkkakekeeanvefieadaeeLp..fednsfdavtiafGlRNvtdieka..LkelaRVlkpggrlvilefskp 147
                   + + +vl v tGtG +a e+ak+ + + vtg+D+s++ Le a+     ke    +++ea  ++L+  +e +s+d + +   l  + + ++a  + el+RVlkp+g l il+    
  MMETSP1137-20121227|6690_1  47 LGRLKGHVLEVGTGTGAVAREVAKMEAvQAVTGIDPSPAFLERARSLGGPKE----KYVEAYSTDLSsaVETASVDHALMWTTLGHIPEEQHAptIIELHRVLKPNGVLHILDNDPC 159
                 4556789*****************999999**************99976554....69999999998779999***999999999998888765588***************97665 PP

  == domain 2    score: -2.6 bits;  conditional E-value: 1.5
   TIGR01934 105 nsfdavtiafGlRNv 119
                  ++d+ + ++G R v
  MMETSP1137-20121227|6690_1 210 TQLDTSAASYGYRHV 224
                 567888888888876 PP

>> TIGR02072  BioC: biotin biosynthesis protein BioC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.5   0.0   1.4e-09   5.2e-07      12     131 ..      35     152 ..      27     155 .. 0.82

  Alignments for each domain:
  == domain 1    score: 27.5 bits;  conditional E-value: 1.4e-09
   TIGR02072  12 hakvQreiakkLlellkekrkfepakvLdiGcGtGiltrallkrfpqaelialDiseemleqakkkls....nvqficgdieklplekksfDlivSnlalQWl..ddlsevlaelarvlkpgGlla 131
                  ++ Qr+ ++ Ll +lk        +vL++G GtG++ r+++k+   + ++ +D s+  le+a++  +     v+ ++ d+++++ e++s+D      +l  +  ++ + ++ el+rvlkp+G+l+
  MMETSP1137-20121227|6690_1  35 ASDGQRQLREALLGRLKG-------HVLEVGTGTGAVAREVAKMEAVQAVTGIDPSPAFLERARSLGGpkekYVEAYSTDLSSAV-ETASVDHALMWTTLGHIpeEQHAPTIIELHRVLKPNGVLH 152
                 5667*************9.......69*************************************999897766777778888777.777788555444544442166777999**********997 PP

>> TIGR01983  UbiG: 3-demethylubiquinone-9 3-O-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.5   0.0     8e-09     3e-06      50     151 ..      51     153 ..      26     165 .. 0.83

  Alignments for each domain:
  == domain 1    score: 24.5 bits;  conditional E-value: 8e-09
   TIGR01983  50 glkvlDvGcGgGllseslarlgae..vtgiDlseelievAklhakkdplkkieyelksveelaeeekesfDvvlamEvlEHvadlee..ilkecaellkpggilfl 151
                 + +vl+vG+G G ++  +a+++a+  vtgiD s   +e A++    ++   +e   +++   +e+  +s D  l+   l H+++ ++   + e+ ++lkp+g+l +
  MMETSP1137-20121227|6690_1  51 KGHVLEVGTGTGAVAREVAKMEAVqaVTGIDPSPAFLERARSLGGPKEKY-VEAYSTDLSSAVET--ASVDHALMWTTLGHIPEEQHapTIIELHRVLKPNGVLHI 153
                 458******************99889***************988777764.77777888888888..568************9876533688999*******8865 PP

>> TIGR00537  hemK_rel_arch: putative methylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.7   0.0   1.6e-07   5.9e-05      11      81 ..      42     114 ..      33     154 .. 0.81

  Alignments for each domain:
  == domain 1    score: 20.7 bits;  conditional E-value: 1.6e-07
   TIGR00537  11 leknlrelknddvleiGaGtGlvairlkekgk..kivatdinPfavkllkenaklnnveldvlesdlfenveg 81 
                 l ++l  + + +vle+G+GtG va  +++  +   ++++d +P+    ++     +++ ++   +dl  +ve 
  MMETSP1137-20121227|6690_1  42 LREALLGRLKGHVLEVGTGTGAVAREVAKMEAvqAVTGIDPSPAFLERARSLGGPKEKYVEAYSTDLSSAVET 114
                 666777777789************9988765544899999999999999998888999999999999999986 PP

>> TIGR03534  RF_mod_PrmC: protein-(glutamine-N5) methyltransferase, release factor-specific
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.0   1.7e-06   0.00065      89     151 ..      51     112 ..      39     121 .. 0.77

  Alignments for each domain:
  == domain 1    score: 17.1 bits;  conditional E-value: 1.7e-06
   TIGR03534  89 klkvlDlgtGsGaIalalakelpdakviavDiseeAlkvarkNakrlglkeveflksdlleal 151
                 k +vl++gtG+Ga+a  +ak+     v+++D s++ l+ ar+     +   ve++  dl +a+
  MMETSP1137-20121227|6690_1  51 KGHVLEVGTGTGAVAREVAKMEAVQAVTGIDPSPAFLERARSLGGPKEKY-VEAYSTDLSSAV 112
                 4589******************************9999998654444433.666666666666 PP

>> TIGR00536  hemK_fam: methyltransferase, HemK family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   6.4e-06    0.0024     116     154 ..      52      90 ..      39     111 .. 0.90

  Alignments for each domain:
  == domain 1    score: 14.8 bits;  conditional E-value: 6.4e-06
   TIGR00536 116 khilDlgtGsGcIalalAleipnaeviavDistdalava 154
                  h+l++gtG+G++a  +A   +   v+++D s+  l+ a
  MMETSP1137-20121227|6690_1  52 GHVLEVGTGTGAVAREVAKMEAVQAVTGIDPSPAFLERA 90 
                 69******************************9887755 PP

>> TIGR02021  BchM-ChlM: magnesium protoporphyrin O-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   6.7e-06    0.0025      36     144 ..      38     142 ..      32     153 .. 0.80

  Alignments for each domain:
  == domain 1    score: 15.1 bits;  conditional E-value: 6.7e-06
   TIGR02021  36 GreamrekllewlpkdslkGkkvlDAGCGtGllsielAkrGa..ivkavDiseklvelarkraekedeaenveFevndlesle..gkfDavvalDvlihYpaediakalerla 144
                 G+ ++re ll +l+     G +vl+ G GtG ++ e+Ak  a   v+++D s++++e ar+   ++++   ve  + dl s+      D+ +   +l h p+e+ a ++ +l 
  MMETSP1137-20121227|6690_1  38 GQRQLREALLGRLK-----G-HVLEVGTGTGAVAREVAKMEAvqAVTGIDPSPAFLERARSLGGPKEK--YVEAYSTDLSSAVetASVDHALMWTTLGHIPEEQHAPTIIELH 142
                 55555666655555.....3.59****************8773369**************99888885..7999999**9987346789999999999999999888777665 PP

>> TIGR02469  CbiT: precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.0     2e-05    0.0073      21      57 ..      52      88 ..      39      93 .. 0.83

  Alignments for each domain:
  == domain 1    score: 14.4 bits;  conditional E-value: 2e-05
   TIGR02469 21 dvllDiGaGtGsvtieaarlvpkgrvyaierneeale 57
                 ++l++G GtG v+ e+a++     v++i+ +++ le
  MMETSP1137-20121227|6690_1 52 GHVLEVGTGTGAVAREVAKMEAVQAVTGIDPSPAFLE 88
                489****************999999*****9987665 PP

>> TIGR04074  bacter_Hen1: 3' terminal RNA ribose 2'-O-methyltransferase Hen1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   6.3e-05     0.023     282     323 ..      50      91 ..      20      99 .. 0.86

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 6.3e-05
   TIGR04074 282 garsvlDlGcGegkLlkaLlaekqfekivgvdvsareLekak 323
                    +vl++G+G g++ +++++ +++++++g+d s + Le+a+
  MMETSP1137-20121227|6690_1  50 LKGHVLEVGTGTGAVAREVAKMEAVQAVTGIDPSPAFLERAR 91 
                 45579**********************************997 PP

>> TIGR00417  speE: spermidine synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   8.1e-05      0.03      75     103 ..      53      81 ..      49      93 .. 0.87

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 8.1e-05
   TIGR00417  75 kvlviGGGDGgvlrevvkhksveeitlve 103
                 +vl +G G G+v rev+k ++v+ +t ++
  MMETSP1137-20121227|6690_1  53 HVLEVGTGTGAVAREVAKMEAVQAVTGID 81 
                 899********************998766 PP

>> TIGR00755  ksgA: dimethyladenosine transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0     7e-05     0.026      30      83 ..      51     107 ..      37     141 .. 0.75

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 7e-05
   TIGR00755  30 sdvvlEiGpGlGaLTeellekakk..vvaiEiDkrlaekLrkkle.leekleviegD 83 
                 +  vlE+G G+Ga  +e+++  +   v++i   + + e+ r+    +e+ +e + +D
  MMETSP1137-20121227|6690_1  51 KGHVLEVGTGTGAVAREVAKMEAVqaVTGIDPSPAFLERARSLGGpKEKYVEAYSTD 107
                 5679**************998765125555555667777777666455555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (276 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        69  (0.0168211); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                        22  (0.00536324); expected 4.1 (0.001)
Passed Fwd filter:                        11  (0.00268162); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.26u 0.14s 00:00:00.40 Elapsed: 00:00:00.65
# Mc/sec: 560.45
//
Query:       MMETSP1137-20121227|6691_1  [L=187]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (187 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        75  (0.0182838); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.23s 00:00:00.35 Elapsed: 00:00:00.32
# Mc/sec: 771.31
//
Query:       MMETSP1137-20121227|6692_1  [L=386]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (386 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        62  (0.0151146); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.23s 00:00:00.42 Elapsed: 00:00:00.33
# Mc/sec: 1543.87
//
Query:       MMETSP1137-20121227|6693_1  [L=193]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (193 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       104  (0.0253535); expected 82.0 (0.02)
Passed bias filter:                       99  (0.0241346); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.22s 00:00:00.35 Elapsed: 00:00:00.39
# Mc/sec: 653.18
//
Query:       MMETSP1137-20121227|6694_1  [L=334]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (334 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       113  (0.0275475); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.20s 00:00:00.38 Elapsed: 00:00:00.39
# Mc/sec: 1130.37
//
Query:       MMETSP1137-20121227|6695_1  [L=501]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (501 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       107  (0.0260848); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.20s 00:00:00.46 Elapsed: 00:00:00.42
# Mc/sec: 1574.44
//
Query:       MMETSP1137-20121227|6696_1  [L=247]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (247 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       119  (0.0290102); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.14s 00:00:00.36 Elapsed: 00:00:00.35
# Mc/sec: 931.47
//
Query:       MMETSP1137-20121227|6697_1  [L=267]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.7e-14   49.8   0.0      2e-13   48.2   0.0    1.7  2  TIGR01068 thioredoxin: thioredoxin
    1.5e-08   32.7   0.0    2.7e-08   31.9   0.0    1.4  1  TIGR01126 pdi_dom: protein disulfide-isomerase domain
    1.9e-08   32.2   0.0    3.9e-08   31.1   0.0    1.4  2  TIGR01130 ER_PDI_fam: protein disulfide isomerases
    8.7e-05   20.0   0.0    0.00024   18.6   0.0    1.9  1  TIGR00385 dsbE: periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily
     0.0035   13.8   0.0      0.005   13.3   0.0    1.2  1  TIGR00424 APS_reduc: 5'-adenylylsulfate reductase, thioredoxin-independent
      0.005   13.9   0.0     0.0084   13.2   0.0    1.4  1  TIGR02740 TraF-like: TraF-like protein


Domain annotation for each model (and alignments):
>> TIGR01068  thioredoxin: thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0       1.1   7.6e+02      49      64 ..      98     113 ..      83     118 .. 0.69
   2 !   48.2   0.0   2.9e-16     2e-13      13      99 ..     174     263 ..     168     265 .. 0.88

  Alignments for each domain:
  == domain 1    score: -1.8 bits;  conditional E-value: 1.1
   TIGR01068  49 vvKlnvdeeqeiaaky 64 
                   Kl vd++++ a++ 
  MMETSP1137-20121227|6697_1  98 TEKLRVDKDEQAARRT 113
                 3578888888777665 PP

  == domain 2    score: 48.2 bits;  conditional E-value: 2.9e-16
   TIGR01068  13 sdklvlvDfwAeWCgpCkmlaPvleelakeleekvkvvKlnvdeeqe..iaakygirsiPtl.llfkngkevkrvvGakpkaalkeliek 99 
                 + ++ lv+f+A+WC +Ck++a  +  l++ + +kv++v l+ d+ ++  + + + +  iP + l+  +g  +++ +G++p + l++ i++
  MMETSP1137-20121227|6697_1 174 NGRPTLVEFYAPWCESCKLMAGSMRRLERTYGDKVNFVVLDGDDPRNapLVRVFRVDGIPHMaLITPKGTLKDTLIGMVPPSVLEDKINA 263
                 45799**************************************97762256889******98355689*****************99986 PP

>> TIGR01126  pdi_dom: protein disulfide-isomerase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.9   0.0     4e-11   2.7e-08      12      81 ..     173     241 ..     168     251 .. 0.81

  Alignments for each domain:
  == domain 1    score: 31.9 bits;  conditional E-value: 4e-11
   TIGR01126  12 denkdvlvefyaPWCGhCkklaPeyeklakelkkeeekvkiakvdataekelaskfkvsgfPtlkffkkg 81 
                 d+ + +lvefyaPWC  Ck +a    +l +++ ++  + ++ + d   +  l + f v+g P + +++ +
  MMETSP1137-20121227|6697_1 173 DNGRPTLVEFYAPWCESCKLMAGSMRRLERTYGDKV-NFVVLDGDDPRNAPLVRVFRVDGIPHMALITPK 241
                 677889**************************9754.34444555556778899********99987654 PP

>> TIGR01130  ER_PDI_fam: protein disulfide isomerases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0      0.94   6.4e+02     269     284 ..     100     115 ..      57     150 .. 0.53
   2 !   31.1   0.0   5.7e-11   3.9e-08     359     425 ..     171     239 ..     169     249 .. 0.86

  Alignments for each domain:
  == domain 1    score: -2.6 bits;  conditional E-value: 0.94
   TIGR01130 269 kfavadeeefgkelee 284
                 k+ v+++e++++ +++
  MMETSP1137-20121227|6697_1 100 KLRVDKDEQAARRTQQ 115
                 2222222222222222 PP

  == domain 2    score: 31.1 bits;  conditional E-value: 5.7e-11
   TIGR01130 359 vldetKdVLvefYApWCGHCkkLapiYeelaekykkeedvviakldataNd..vpefevegFPTilfvp 425
                 +ld+ + +LvefYApWC  Ck +a    +l  +y ++ + v+   d + N   v+ f+v g P + +++
  MMETSP1137-20121227|6697_1 171 ALDNGRPTLVEFYAPWCESCKLMAGSMRRLERTYGDKVNFVVLDGDDPRNAplVRVFRVDGIPHMALIT 239
                 5799999*****************************99***********97434559999999887753 PP

>> TIGR00385  dsbE: periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.0   3.5e-07   0.00024      44     122 ..     156     238 ..     115     255 .. 0.77

  Alignments for each domain:
  == domain 1    score: 18.6 bits;  conditional E-value: 3.5e-07
   TIGR00385  44 keaelkekvqlltaevlkkgklvLlnvwasWCptCraehplLkelake.g..lrivgvdykDesqkal.kfLkelGnPyqlvl 122
                 k+ ++ e+  l  + +l +g+++L+ ++a WC  C+     +++l ++ g  ++ v +d  D++++ l ++ +  G P+ +++
  MMETSP1137-20121227|6697_1 156 KLLKIMESESLPLPAALDNGRPTLVEFYAPWCESCKLMAGSMRRLERTyGdkVNFVVLDGDDPRNAPLvRVFRVDGIPHMALI 238
                 4444555555556678999*****************99888888876533559999999999998876255666677766554 PP

>> TIGR00424  APS_reduc: 5'-adenylylsulfate reductase, thioredoxin-independent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   0.0   7.3e-06     0.005     374     417 ..     177     217 ..     171     246 .. 0.80

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 7.3e-06
   TIGR00424 374 awlvvlyapwcpfcqameasyvelaeklagsgvkvakfradgdq 417
                 + lv +yapwc+ c+ m +s   l       g+kv     dgd+
  MMETSP1137-20121227|6697_1 177 PTLVEFYAPWCESCKLMAGSMRRLERT---YGDKVNFVVLDGDD 217
                 56899***************9999764...57888877778876 PP

>> TIGR02740  TraF-like: TraF-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   0.0   1.2e-05    0.0084     173     215 ..     179     221 ..     174     263 .. 0.83

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 1.2e-05
   TIGR02740 173 lffffksdCklCeqqapilkaleerygievlpvSvDGkplpgg 215
                 l  f++  C+ C+ +a  ++ le  yg +v +v +DG    + 
  MMETSP1137-20121227|6697_1 179 LVEFYAPWCESCKLMAGSMRRLERTYGDKVNFVVLDGDDPRNA 221
                 6779999******************************876664 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (267 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       154  (0.0375427); expected 82.0 (0.02)
Passed bias filter:                      135  (0.0329108); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.26u 0.16s 00:00:00.42 Elapsed: 00:00:00.46
# Mc/sec: 766.11
//
Query:       MMETSP1137-20121227|6698_1  [L=936]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.9e-06   24.3   0.0    1.3e-05   23.2   0.0    1.5  1  TIGR00229 sensory_box: PAS domain S-box protein
      0.004   13.6   0.0     0.0061   12.9   0.0    1.2  1  TIGR02938 nifL_nitrog: nitrogen fixation negative regulator NifL


Domain annotation for each model (and alignments):
>> TIGR00229  sensory_box: PAS domain S-box protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.2   0.0   6.3e-09   1.3e-05       2     116 ..     761     875 ..     760     877 .. 0.87

  Alignments for each domain:
  == domain 1    score: 23.2 bits;  conditional E-value: 6.3e-09
   TIGR00229   2 eseeryrailesspdaiivvdeeGnilyvNrafeeifGYsaeeliGrnvlelipeedreevrerierrle.gerepvseerrvkrkdGseiwvevsvspird.aggelgvvgivrDI 116
                 ++e++++a++++    i   d   ni+ +++a+ ++  Y+ae++ G+++  +  +   e++ e +++ ++ g+ ++     ++ +++G+ +   ++v p+rd  g++  ++++  +I
  MMETSP1137-20121227|6698_1 761 AEEKQLQAAADQHVQVITSKDAPFNIVWASQAWLDLCEYTAEQVAGQTLELIQGPRTCEASVEQLMKSIRaGT-SISIDMINY-TSSGKAFSHTLRVEPLRDsRGERQCFQATSTNI 875
                 689************************************************7777777777777777777355.777777777.******************999999999987666 PP

>> TIGR02938  nifL_nitrog: nitrogen fixation negative regulator NifL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.9   0.0     3e-06    0.0061       7     109 ..     767     869 ..     762     882 .. 0.90

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 3e-06
   TIGR02938   7 rqtvdqapvaisitdlkanilyanaafseitGyakeeviGknesvlsnrttPpevyqalwgslaekkPwaGkllnrrkdgelylaeltvaPvlneaGetthfl 109
                 +++ dq    i+  d   ni++a +a+ ++  y+ e+v G+   ++   +t      +l +s+      +  ++n    g+ +   l v P+ +  Ge   f 
  MMETSP1137-20121227|6698_1 767 QAAADQHVQVITSKDAPFNIVWASQAWLDLCEYTAEQVAGQTLELIQGPRTCEASVEQLMKSIRAGTSISIDMINYTSSGKAFSHTLRVEPLRDSRGERQCFQ 869
                 566777777788899999*****************************99999999999***************************************987775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (936 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       139  (0.0338859); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.56u 0.17s 00:00:00.73 Elapsed: 00:00:00.63
# Mc/sec: 1960.98
//
Query:       MMETSP1137-20121227|6699_1  [L=103]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (103 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        52  (0.0126767); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.11s 00:00:00.26 Elapsed: 00:00:00.26
# Mc/sec: 522.88
//
Query:       MMETSP1137-20121227|6700_1  [L=70]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        16  (0.00390054); expected 82.0 (0.02)
Passed bias filter:                       15  (0.00365675); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.12s 00:00:00.23 Elapsed: 00:00:00.24
# Mc/sec: 384.97
//
Query:       MMETSP1137-20121227|6701_1  [L=760]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (760 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       109  (0.0265724); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.47u 0.15s 00:00:00.62 Elapsed: 00:00:00.71
# Mc/sec: 1412.84
//
Query:       MMETSP1137-20121227|6702_1  [L=70]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        30  (0.00731351); expected 82.0 (0.02)
Passed bias filter:                       27  (0.00658216); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.14s 00:00:00.26 Elapsed: 00:00:00.33
# Mc/sec: 279.98
//
Query:       MMETSP1137-20121227|6703_1  [L=78]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (78 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        32  (0.00780107); expected 82.0 (0.02)
Passed bias filter:                       32  (0.00780107); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.30
# Mc/sec: 343.17
//
Query:       MMETSP1137-20121227|6704_1  [L=468]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.7e-78  259.5   0.0    4.3e-77  257.4   0.0    1.7  1  TIGR00742 yjbN: tRNA dihydrouridine synthase A
    1.9e-34  117.1   0.0      5e-34  115.7   0.0    1.6  1  TIGR00737 nifR3_yhdG: putative TIM-barrel protein, nifR3 family
      0.001   16.1   0.0     0.0019   15.1   0.0    1.4  1  TIGR01037 pyrD_sub1_fam: dihydroorotate dehydrogenase family protein
     0.0077   13.6   0.1      0.015   12.7   0.0    1.4  1  TIGR00343 TIGR00343: pyridoxal 5'-phosphate synthase, synthase subunit Pdx1
     0.0085   13.3   0.0      0.015   12.4   0.0    1.7  1  TIGR03572 WbuZ: glycosyl amidation-associated protein WbuZ
  ------ inclusion threshold ------
      0.023   11.8   0.0      0.061   10.4   0.0    1.7  1  TIGR00735 hisF: imidazoleglycerol phosphate synthase, cyclase subunit


Domain annotation for each model (and alignments):
>> TIGR00742  yjbN: tRNA dihydrouridine synthase A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  257.4   0.0   6.2e-80   4.3e-77       2     301 ..      77     399 ..      76     409 .. 0.86

  Alignments for each domain:
  == domain 1    score: 257.4 bits;  conditional E-value: 6.2e-80
   TIGR00742   2 klsvaPmlditdrhfryllrllskkvllytemvtakaiihgdkkk...............llkfseeekPvalqlggsdpedlakcaklaeefgydeinlnvGcPsdrv..qngnfGaclmanadlvadivkamkeaveiPvtvktriGideldsyeelvdfveivsdkGikefivharkawlkGlsPkenreiPplryervyqlkkdfpnllieinGGiksleeikkhls.fvdsvmvGreayenPyllaavdrelfdetdeiltrkeiveqmlpyiee.elsqg.lsl.nkivrh....llglfqskegakkfrrnlsenalk 301
                  +++aPm+d+tdrhfr l+r +s + +l++em   +ai+   + +               ++ fs ee+Pv +qlggsd + la++ak+ae++gydeinln GcP+        n+Ga lm ++ lva++  a+ +av+iPv+vk r+G+d++dsyeel +fv +vs  G+k+fivharka+l Gl   +nr +Pplrye v +l  dfp+l+  inGGi++le +++ +   + +vm+Gr a  +P l+a+    +f+   e++tr++++++ l y  + +++++ ++l +++ r     l+glf+++    ++r+++++ ++ 
  MMETSP1137-20121227|6704_1  77 AIAIAPMIDVTDRHFRMLIRCVSPHPTLWSEMTWDRAILFNTQSEpeyclnknpprpleaIIGFSAEEHPVVMQLGGSDAAMLARAAKIAEQRGYDEINLNCGCPAATRgrARNNYGARLMFDPPLVAECCAAIINAVSIPVSVKCRLGVDHRDSYEELHEFVSTVSAVGVKHFIVHARKAIL-GLDTTKNRSVPPLRYEWVLRLVDDFPQLFFTINGGINTLETARDLIAkGLHGVMIGRRAKAEPFLFARTG-LVFGGGGEVPTRRQVITRYLAYAVQaQKDNYdDKLpETMARSllipLIGLFHGTCIGARWRQEVTDVMHD 399
                 689************************************87543222222222222222278899****************************************8754113468*******************************************************************9.9******************************************9885269*****************986.58999*****************654144334245533444541111679***9998889*****998775 PP

>> TIGR00737  nifR3_yhdG: putative TIM-barrel protein, nifR3 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  115.7   0.0   7.4e-37     5e-34      10     245 ..      78     338 ..      75     401 .. 0.81

  Alignments for each domain:
  == domain 1    score: 115.7 bits;  conditional E-value: 7.4e-37
   TIGR00737  10 vvlaPlagvtdlafRrlvkeye.aglvvsEmvssealveksek.............tkklleiaedekpisvQlagsdpdvmaeaAkiaeelgadiiDlNmGCPvkki..tkkgaGsallkepeliekivkavveavevPVTvKiRiGwdeeh..inveeaariaedaGaqavalHgRTraqlyeGean.......wdiiarvkqavk.iPVignGDitspedAkamLeetgadgvligRgalGkPwlfkeieqylttgklk 245
                 + +aP+ +vtd+ fR l++       + sEm  ++a++ ++++              + ++ ++++e+p+ +Ql gsd +++a aAkiae+ g d i lN+GCP+      +++ G+ l+++p l+++  +a+++av++PV vK R+G d+ +    ++e++  +++ G++   +H+R +  + + + n       ++++ r+++    +    nG i++ e A+ ++ ++   gv+igR a  +P+lf+++  ++  g + 
  MMETSP1137-20121227|6704_1  78 IAIAPMIDVTDRHFRMLIRCVSpHPTLWSEMTWDRAILFNTQSepeyclnknpprpLEAIIGFSAEEHPVVMQLGGSDAAMLARAAKIAEQRGYDEINLNCGCPAATRgrARNNYGARLMFDPPLVAECCAAIINAVSIPVSVKCRLGVDHRDsyEELHEFVSTVSAVGVKHFIVHARKAILGLDTTKNrsvpplrYEWVLRLVDDFPqLFFTINGGINTLETARDLIAKG-LHGVMIGRRAKAEPFLFARTGLVFGGGGEV 338
                 678****************999556778********99988761122211111112345678999***************************************97641267788***********************************876225789*******************999888876643333333888888888776566678************99886.9******************99888766443 PP

>> TIGR01037  pyrD_sub1_fam: dihydroorotate dehydrogenase family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   2.8e-06    0.0019      92     165 ..     146     223 ..     134     252 .. 0.81

  Alignments for each domain:
  == domain 1    score: 15.1 bits;  conditional E-value: 2.8e-06
   TIGR01037  92 kliasvyGeseeefaevaeklekadkyvdaleLnvsCPhvkg......aGieiGqdpelsaevvkavkekvdkPvlakLs 165
                 ++++++ G++    a +a+  e  ++  d ++Ln  CP +        +G+++  dp l+ae + a+ ++v +Pv++k  
  MMETSP1137-20121227|6704_1 146 PVVMQLGGSDAAMLARAAKIAE--QRGYDEINLNCGCPAATRgrarnnYGARLMFDPPLVAECCAAIINAVSIPVSVKCR 223
                 3788888888888888888777..56679*********98522222349****************************965 PP

>> TIGR00343  TIGR00343: pyridoxal 5'-phosphate synthase, synthase subunit Pdx1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.7   0.0   2.1e-05     0.015      21      77 ..     161     225 ..     145     235 .. 0.74

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 2.1e-05
   TIGR00343  21 eqakiaeeaGavavmalervpadir....aaGgvarmsdpklike....ildavsipvmakvriG 77 
                   akiae+ G   +      pa  r    +  g   m dp l+ e    i++avsipv  k+r+G
  MMETSP1137-20121227|6704_1 161 RAAKIAEQRGYDEINLNCGCPAATRgrarNNYGARLMFDPPLVAEccaaIINAVSIPVSVKCRLG 225
                 56788888887777766777887662111333445589**99987555589************99 PP

>> TIGR03572  WbuZ: glycosyl amidation-associated protein WbuZ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.4   0.0   2.3e-05     0.015      76     121 ..     288     333 ..     208     379 .. 0.86

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 2.3e-05
   TIGR03572  76 PltvgGGiksledvkkllkaGadKvsintaalenpelieeiakkfG 121
                  +t+ GGi++le ++ l+ +G+  v+i   a  +p l  +   +fG
  MMETSP1137-20121227|6704_1 288 FFTINGGINTLETARDLIAKGLHGVMIGRRAKAEPFLFARTGLVFG 333
                 5799************************999999999888888887 PP

>> TIGR00735  hisF: imidazoleglycerol phosphate synthase, cyclase subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   8.9e-05     0.061      64     122 ..     275     334 ..     254     357 .. 0.82

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 8.9e-05
   TIGR00735  64 evvervaekv.fiPltvgGGiksiedvkkllraGadkvsintaavkapelikeladrfGs 122
                 e+v r  +   ++ +t+ GGi+++e ++ l++ G   v i+  a ++p l+++++  fG 
  MMETSP1137-20121227|6704_1 275 EWVLRLVDDFpQLFFTINGGINTLETARDLIAKGLHGVMIGRRAKAEPFLFARTGLVFGG 334
                 555555544325779*************************************99999985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (468 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        98  (0.0238908); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.40u 0.17s 00:00:00.57 Elapsed: 00:00:00.42
# Mc/sec: 1470.74
//
Query:       MMETSP1137-20121227|6705_1  [L=1041]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.5e-56  190.0   0.2    4.6e-21   72.8   0.0    4.4  4  TIGR03719 ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family
    9.1e-43  144.8   0.0      3e-13   47.4   0.0    4.3  4  TIGR02857 CydD: thiol reductant ABC exporter, CydD subunit
    1.9e-41  139.9   0.2    1.4e-13   47.9   0.1    4.3  4  TIGR03375 type_I_sec_LssB: type I secretion system ATPase
    2.3e-39  133.1   0.0    1.4e-12   44.7   0.0    4.1  4  TIGR01842 type_I_sec_PrtD: type I secretion system ATPase
    2.9e-39  132.7   0.0    4.2e-14   50.2   0.0    4.4  4  TIGR03873 F420-0_ABC_ATP: proposed F420-0 ABC transporter, ATP-binding protein
    1.6e-38  130.4   0.0    3.2e-11   41.0   0.0    4.2  4  TIGR03864 PQQ_ABC_ATP: ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system
    5.8e-37  125.4   0.0    6.2e-11   40.2   0.0    4.2  4  TIGR03740 galliderm_ABC: lantibiotic protection ABC transporter, ATP-binding subunit
    6.4e-37  125.4   0.0    2.7e-10   38.0   0.0    4.2  4  TIGR03522 GldA_ABC_ATP: gliding motility-associated ABC transporter ATP-binding subunit GldA
    9.8e-37  124.5   0.0    4.3e-12   44.0   0.0    4.4  4  TIGR02673 FtsE: cell division ATP-binding protein FtsE
    2.7e-36  123.2   2.3    6.4e-11   39.9   0.0    4.3  4  TIGR01188 drrA: daunorubicin resistance ABC transporter, ATP-binding protein
    6.2e-36  121.8   0.0    2.2e-11   41.5   0.0    4.3  4  TIGR03410 urea_trans_UrtE: urea ABC transporter, ATP-binding protein UrtE
    4.8e-35  118.6   2.2    2.2e-10   38.1   0.0    4.4  4  TIGR01166 cbiO: cobalt ABC transporter, ATP-binding protein
    9.6e-35  117.8   0.0    4.5e-12   43.7   0.0    4.3  4  TIGR03608 L_ocin_972_ABC: putative bacteriocin export ABC transporter, lactococcin 972 group
    1.1e-34  117.8   0.0    8.3e-11   39.5   0.0    4.3  4  TIGR00972 3a0107s01c2: phosphate ABC transporter, ATP-binding protein
    1.5e-34  117.3   3.9    3.2e-11   40.4   0.0    4.7  5  TIGR02868 CydC: thiol reductant ABC exporter, CydC subunit
    2.8e-34  116.5   0.1    1.4e-08   32.3   0.0    4.4  4  TIGR02315 ABC_phnC: phosphonate ABC transporter, ATP-binding protein
    4.7e-33  112.4   0.0    4.2e-13   47.2   0.0    4.4  4  TIGR02211 LolD_lipo_ex: lipoprotein releasing system, ATP-binding protein
    1.2e-32  111.1   0.1    1.6e-08   32.1   0.0    4.4  4  TIGR01978 sufC: FeS assembly ATPase SufC
    1.3e-32  111.2   0.1    5.4e-10   37.2   0.0    4.4  4  TIGR00960 3a0501s02: type II secretory pathway family protein
    2.8e-31  106.6   0.7    3.3e-10   37.8   0.0    4.3  4  TIGR01189 ccmA: heme ABC exporter, ATP-binding protein CcmA
    2.9e-31  106.6   0.0    1.3e-10   38.4   0.0    4.1  4  TIGR02204 MsbA_rel: ABC transporter, permease/ATP-binding protein
    5.1e-31  105.8   0.2    2.4e-09   34.9   0.0    4.3  4  TIGR00968 3a0106s01: sulfate ABC transporter, ATP-binding protein
    7.2e-31  105.5   0.4      1e-11   42.8   0.0    4.3  4  TIGR03771 anch_rpt_ABC: anchored repeat-type ABC transporter, ATP-binding subunit
    1.1e-30  104.8   0.0    1.2e-09   35.9   0.0    4.4  4  TIGR02769 nickel_nikE: nickel import ATP-binding protein NikE
    3.9e-30  103.1   0.1    6.7e-09   33.6   0.0    4.3  4  TIGR03411 urea_trans_UrtD: urea ABC transporter, ATP-binding protein UrtD
    3.3e-29   99.7   0.1    8.9e-08   29.3   0.0    4.3  4  TIGR01288 nodI: nodulation ABC transporter NodI
    4.8e-29   99.2   0.9    8.7e-10   35.5   0.0    4.9  5  TIGR03797 NHLM_micro_ABC2: NHLM bacteriocin system ABC transporter, ATP-binding protein
    7.5e-29   98.3   0.0    2.6e-08   30.4   0.0    4.1  4  TIGR00958 3a01208: antigen peptide transporter 2
    2.2e-28   97.2   1.0    1.7e-12   45.3   0.0    5.1  5  TIGR02982 heterocyst_DevA: ABC exporter ATP-binding subunit, DevA family
    2.3e-28   96.7   0.0    4.6e-09   32.8   0.0    4.1  4  TIGR03796 NHLM_micro_ABC1: NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein
    9.1e-28   94.9   0.3    2.7e-09   33.9   0.0    4.2  4  TIGR02203 MsbA_lipidA: lipid A export permease/ATP-binding protein MsbA
    9.1e-28   94.7   0.0    8.6e-07   25.4   0.0    4.1  4  TIGR01846 type_I_sec_HlyB: type I secretion system ATPase
    1.8e-27   94.0   0.0    5.6e-09   32.9   0.0    4.1  4  TIGR01193 bacteriocin_ABC: ABC-type bacteriocin transporter
    2.4e-27   93.4   0.1    2.1e-08   30.9   0.0    4.3  4  TIGR02633 xylG: D-xylose ABC transporter, ATP-binding protein
    2.6e-27   93.7   0.0      7e-09   33.4   0.0    4.2  4  TIGR01277 thiQ: thiamine ABC transporter, ATP-binding protein
    5.1e-27   92.4   0.1    4.3e-14   49.8   0.0    4.0  3  TIGR03269 met_CoM_red_A2: methyl coenzyme M reductase system, component A2
    1.5e-26   91.3   0.1    4.2e-10   37.2   0.0    4.2  4  TIGR03265 PhnT2: putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein
    6.8e-26   89.2   0.0    1.4e-11   42.1   0.0    4.3  4  TIGR02142 modC_ABC: molybdate ABC transporter, ATP-binding protein
    1.9e-25   87.5   0.0    3.5e-06   24.5   0.0    4.4  4  TIGR02324 CP_lyasePhnL: phosphonate C-P lyase system protein PhnL
    5.4e-25   85.9   0.2    4.3e-09   33.8   0.0    4.2  4  TIGR03005 ectoine_ehuA: ectoine/hydroxyectoine ABC transporter, ATP-binding protein EhuA
    1.1e-23   81.6   0.0    1.2e-07   28.5   0.0    4.3  4  TIGR00955 3a01204: pigment precursor permease
    1.1e-23   81.7   0.2    4.6e-06   23.7   0.0    4.2  4  TIGR03258 PhnT: 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT
    4.6e-23   79.6   0.0    7.4e-05   19.7   0.0    4.2  4  TIGR02314 ABC_MetN: D-methionine ABC transporter, ATP-binding protein
    5.6e-23   79.4   1.0    2.6e-08   31.3   0.0    4.3  4  TIGR02770 nickel_nikD: nickel import ATP-binding protein NikD
    8.2e-20   69.2   0.4    2.1e-06   25.3   0.0    4.3  4  TIGR01184 ntrCD: nitrate ABC transporter, ATP-binding proteins C and D
    4.6e-18   63.0   0.0    6.5e-06   22.8   0.0    4.1  4  TIGR01192 chvA: glucan exporter ATP-binding protein
      2e-17   61.2   0.5    5.5e-05   20.2   0.0    4.3  4  TIGR01186 proV: glycine betaine/L-proline transport ATP binding subunit
      5e-17   59.8   0.1    8.2e-07   26.2   0.0    4.2  4  TIGR01187 potA: polyamine ABC transporter, ATP-binding protein
    5.7e-17   59.2   5.5    3.6e-05   20.2   0.0    4.5  4  TIGR00954 3a01203: peroxysomal long chain fatty acyl transporter
    7.3e-15   51.3   0.0      9e-05   17.9   0.0    4.0  4  TIGR01271 CFTR_protein: cystic fibrosis transmembrane conductor regulator (CFTR)
      2e-13   47.9   2.1     0.0019   15.0   0.0    4.3  4  TIGR03415 ABC_choXWV_ATP: choline ABC transporter, ATP-binding protein
    5.7e-13   46.1   0.0      3e-05   20.6   0.0    4.1  4  TIGR01194 cyc_pep_trnsptr: cyclic peptide transporter
    1.5e-12   45.4   0.0     0.0027   15.0   0.0    4.4  4  TIGR02323 CP_lyasePhnK: phosphonate C-P lyase system protein PhnK
    2.9e-11   38.8   0.4     0.0017   13.0   0.1    3.9  3  TIGR01257 rim_protein: rim ABC transporter
    8.2e-11   37.9   0.0    0.00035   15.9   0.0    3.6  3  TIGR00957 MRP_assoc_pro: multi drug resistance-associated protein (MRP)
    7.9e-09   32.1   0.2     0.0063   12.5   0.1    4.0  4  TIGR00630 uvra: excinuclease ABC subunit A
    4.5e-06   23.8   0.1      0.002   15.1   0.0    2.5  2  TIGR00750 lao: LAO/AO transport system ATPase
    7.1e-06   21.7   0.2       0.14    7.4   0.0    4.0  4  TIGR00956 3a01205: pleiotropic drug resistance family protein
    0.00046   17.3   0.0       0.08   10.0   0.0    2.3  2  TIGR01526 nadR_NMN_Atrans: nicotinamide-nucleotide adenylyltransferase
     0.0011   14.5   5.3       0.28    6.6   0.0    3.9  4  TIGR00606 rad50: rad50
     0.0016   15.4   0.1       0.46    7.3   0.0    2.5  2  TIGR02729 Obg_CgtA: Obg family GTPase CgtA
     0.0079   13.7   0.1       0.31    8.6   0.0    2.4  2  TIGR02322 phosphon_PhnN: phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN
  ------ inclusion threshold ------
      0.014   11.4   0.1       0.57    6.1   0.0    2.2  2  TIGR00929 VirB4_CagE: type IV secretion/conjugal transfer ATPase, VirB4 family
      0.024   11.9   2.3        1.1    6.4   0.0    3.3  2  TIGR03574 selen_PSTK: L-seryl-tRNA(Sec) kinase


Domain annotation for each model (and alignments):
>> TIGR03719  ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.0   0.0   5.6e-09   3.6e-07     328     370 ..     411     453 ..     400     458 .. 0.90
   2 !   72.8   0.0   7.2e-23   4.6e-21     158     248 ..     514     608 ..     491     623 .. 0.88
   3 !   28.5   0.0   1.9e-09   1.2e-07       5      76 ..     645     721 ..     641     790 .. 0.70
   4 !   56.0   0.0   9.1e-18   5.8e-16     438     540 ..     875     976 ..     847    1029 .. 0.71

  Alignments for each domain:
  == domain 1    score: 27.0 bits;  conditional E-value: 5.6e-09
   TIGR03719 328 lskafgdklliddlsfklpkggivGviGpnGaGkstlfklitg 370
                  s a+g+++l+++  +kl +g   G+iGpnGaGkstl++ i+ 
  MMETSP1137-20121227|6705_1 411 FSLAYGNRVLLHNTRLKLKRGKCYGLIGPNGAGKSTLMRSIAA 453
                 5678***********************************9875 PP

  == domain 2    score: 72.8 bits;  conditional E-value: 7.2e-23
   TIGR03719 158 kveklsGGekrrvalcrlllekPdlllldePtnhldaesvaWlekflkeykG...tvvavthdryfldnvaeWileldrGegi.pykgnysswle 248
                  v  lsGG + r+al+r +l++P+lllldePtnh+d   vaWl k++++ +    + ++v hd  fld va+  +  ++ + +  ykgn s++++
  MMETSP1137-20121227|6705_1 514 PVGALSGGWRMRLALSRAMLKEPELLLLDEPTNHVDVHGVAWLTKYIQDLSNksiSSMIVSHDTAFLDAVAQDCVHYEKNRKLkVYKGNLSEFVK 608
                 6889******************************************9998762224579****************9999876527******9986 PP

  == domain 3    score: 28.5 bits;  conditional E-value: 1.9e-09
   TIGR03719   5 ytmkrvskvvpp.kkeilkdislsffpgakiGvlGlnGaGkstllkimaGvdkefeGe....alaaegikvGyleqe 76 
                  +m++vs  +p+ +++ l++is++    +++ v+G+nGaGkst++k+m G     eGe    ++ ++++++ y++q 
  MMETSP1137-20121227|6705_1 645 IKMTDVSFRYPTrEQNTLNNISVQVSMASRVAVIGVNGAGKSTMIKLMVGELLPNEGEgspvIQRHPNMRLAYVAQH 721
                 56777777777645678888888888888888888888888888888888544444441122234566777777775 PP

  == domain 4    score: 56.0 bits;  conditional E-value: 9.1e-18
   TIGR03719 438 qkkvgelsGGernrvhlakllkeggnvllldePtndldvetlraleeallefaGcavvishdrwfldriathilafegdskveffeGnyeeyeedkkkrlGed 540
                   k+g+lsGG++ +v la  +  +  v++ldePtn ld + l al  a+++faG +++ish r f   ++  + +   d++++    ++    e+ +k+  ++
  MMETSP1137-20121227|6705_1 875 YSKIGALSGGQKVKVVLAAAMWMEPHVIILDEPTNFLDRDSLGALACAVKNFAGGVIIISHQREFYSALCPEVWSV-VDGRCTVTGSEWMGAAEKARKKAEKE 976
                 4678888888888888888888888888888888888888888888888888888888888888888877776654.23344444444444444444444444 PP

>> TIGR02857  CydD: thiol reductant ABC exporter, CydD subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0   1.2e-05   0.00077     325     369 ..     409     452 ..     369     461 .. 0.74
   2 !   47.4   0.0   4.7e-15     3e-13     458     522 ..     517     582 ..     490     588 .. 0.87
   3 !   40.0   0.0   8.1e-13   5.2e-11     314     405 ..     637     722 ..     621     728 .. 0.85
   4 !   35.3   0.0   2.1e-11   1.3e-09     447     521 ..     873     941 ..     838     950 .. 0.79

  Alignments for each domain:
  == domain 1    score: 16.3 bits;  conditional E-value: 1.2e-05
   TIGR02857 325 envsvayegrkpalkevsltvepgelvalvGaSGaGKstllklll 369
                  + s+ay +r   l++  l+++ g+ ++l+G+ GaGKstl++ ++
  MMETSP1137-20121227|6705_1 409 CEFSLAYGNRV-LLHNTRLKLKRGKCYGLIGPNGAGKSTLMRSIA 452
                 46778888888.9***************************98765 PP

  == domain 2    score: 47.4 bits;  conditional E-value: 4.7e-15
   TIGR02857 458 gLSgGqrqRlaLArallrdapllllDEPtahLDaeteaevlealrela.egrtvllvaHrlalael 522
                  LSgG r RlaL ra+l++ +llllDEPt h+D +  a +++ +++l+ +  + ++v+H++a + +
  MMETSP1137-20121227|6705_1 517 ALSGGWRMRLALSRAMLKEPELLLLDEPTNHVDVHGVAWLTKYIQDLSnKSISSMIVSHDTAFLDA 582
                 59*********************************************95566789*****998765 PP

  == domain 3    score: 40.0 bits;  conditional E-value: 8.1e-13
   TIGR02857 314 ltaaassslelenvsvayegrk.palkevsltvepgelvalvGaSGaGKstllklllgfvepteGailvngaelaeldadswrkqiawvpQkP 405
                 +t++ +  +++++vs++y+ r+ + l+++s++v+  ++va++G  GaGKst++kl++g + p+eG+    g+++ + +++    ++a+v+Q++
  MMETSP1137-20121227|6705_1 637 VTSKTKALIKMTDVSFRYPTREqNTLNNISVQVSMASRVAVIGVNGAGKSTMIKLMVGELLPNEGE----GSPVIQRHPN---MRLAYVAQHA 722
                 45555568**************9******************************************7....4455555544...6778888876 PP

  == domain 4    score: 35.3 bits;  conditional E-value: 2.1e-11
   TIGR02857 447 gleteiGergagLSgGqrqRlaLArallrdapllllDEPtahLDaeteaevlealrelaegrtvllvaHrlalae 521
                 g+ ++iG     LSgGq+ ++ LA a+  + ++++lDEPt  LD+++  ++  a++++a g  v++++H+++   
  MMETSP1137-20121227|6705_1 873 GTYSKIG----ALSGGQKVKVVLAAAMWMEPHVIILDEPTNFLDRDSLGALACAVKNFAGG--VIIISHQREFYS 941
                 4444444....6*********************************************9988..8999**998654 PP

>> TIGR03375  type_I_sec_LssB: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0   6.2e-06    0.0004     471     514 ..     409     452 ..     378     458 .. 0.87
   2 !   37.5   0.0   2.9e-12   1.8e-10     603     669 ..     517     584 ..     500     590 .. 0.91
   3 !   47.9   0.1   2.1e-15   1.4e-13     462     523 ..     641     702 ..     637     704 .. 0.94
   4 !   32.1   0.0   1.3e-10   8.3e-09     603     664 ..     880     939 ..     854     961 .. 0.86

  Alignments for each domain:
  == domain 1    score: 16.6 bits;  conditional E-value: 6.2e-06
   TIGR03375 471 vsfkYpeeekaaLknvslkikpGekvaiiGriGsGKstllklll 514
                 ++f+    ++  L+n++lk+k G   ++iG +G+GKstl++ ++
  MMETSP1137-20121227|6705_1 409 CEFSLAYGNRVLLHNTRLKLKRGKCYGLIGPNGAGKSTLMRSIA 452
                 566666677889***************************99765 PP

  == domain 2    score: 37.5 bits;  conditional E-value: 2.9e-12
   TIGR03375 603 sLSgGQrqavalaRallkdppillLDEPtsalDnsseekllerLkella.dkTlvlvtHrtslLelvd 669
                 +LSgG r  +al+Ra+lk+p++llLDEPt+++D +  + l + +++l++     ++v+H t++L+ v 
  MMETSP1137-20121227|6705_1 517 ALSGGWRMRLALSRAMLKEPELLLLDEPTNHVDVHGVAWLTKYIQDLSNkSISSMIVSHDTAFLDAVA 584
                 7**********************************************996678899********9885 PP

  == domain 3    score: 47.9 bits;  conditional E-value: 2.1e-15
   TIGR03375 462 lkGeielknvsfkYpeeekaaLknvslkikpGekvaiiGriGsGKstllklllglyepteGs 523
                  k  i++ +vsf+Yp +e+++L+n+s++++  ++va+iG +G+GKst+ kl++g + p+eG+
  MMETSP1137-20121227|6705_1 641 TKALIKMTDVSFRYPTREQNTLNNISVQVSMASRVAVIGVNGAGKSTMIKLMVGELLPNEGE 702
                 566799*****************************************************996 PP

  == domain 4    score: 32.1 bits;  conditional E-value: 1.3e-10
   TIGR03375 603 sLSgGQrqavalaRallkdppillLDEPtsalDnsseekllerLkelladkTlvlvtHrtsl 664
                 +LSgGQ+  v+la a+ ++p++++LDEPt+ lD+ s   l  ++k+++ +  +++++H+ ++
  MMETSP1137-20121227|6705_1 880 ALSGGQKVKVVLAAAMWMEPHVIILDEPTNFLDRDSLGALACAVKNFAGG--VIIISHQREF 939
                 7****************************************999999876..7888898765 PP

>> TIGR01842  type_I_sec_PrtD: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0   8.3e-06   0.00053     327     365 ..     414     452 ..     400     458 .. 0.89
   2 !   44.7   0.0   2.2e-14   1.4e-12     453     521 ..     516     584 ..     497     600 .. 0.89
   3 !   31.4   0.1   2.4e-10   1.5e-08     314     374 ..     642     702 ..     630     704 .. 0.94
   4 !   34.8   0.0   2.4e-11   1.5e-09     454     532 ..     880     956 ..     865     963 .. 0.80

  Alignments for each domain:
  == domain 1    score: 16.4 bits;  conditional E-value: 8.3e-06
   TIGR01842 327 peekkktlkgisfalkaGealaiiGpsgsGkssLarllv 365
                 + +++  l++  ++lk G+  ++iGp g+Gks+L+r + 
  MMETSP1137-20121227|6705_1 414 AYGNRVLLHNTRLKLKRGKCYGLIGPNGAGKSTLMRSIA 452
                 56788999****************************885 PP

  == domain 2    score: 44.7 bits;  conditional E-value: 2.2e-14
   TIGR01842 453 aaLsgGqrqRiaLaRalygdPklvvLDePnanLDeeGeqalakalkelkarkitvvvithrpsllelvd 521
                  aLsgG r R+aL Ra+  +P l++LDeP   +D +G + l+k +++l ++ i+ ++++h ++ l++v 
  MMETSP1137-20121227|6705_1 516 GALSGGWRMRLALSRAMLKEPELLLLDEPTNHVDVHGVAWLTKYIQDLSNKSISSMIVSHDTAFLDAVA 584
                 37*************************************************************999885 PP

  == domain 3    score: 31.4 bits;  conditional E-value: 2.4e-10
   TIGR01842 314 egelevenvslvppeekkktlkgisfalkaGealaiiGpsgsGkssLarllvGvwlpasGs 374
                 +  +++ +vs++ p+ +++tl++is++++  + +a+iG  g+Gks++ +l+vG  lp++G+
  MMETSP1137-20121227|6705_1 642 KALIKMTDVSFRYPTREQNTLNNISVQVSMASRVAVIGVNGAGKSTMIKLMVGELLPNEGE 702
                 66789999**********************************************9999985 PP

  == domain 4    score: 34.8 bits;  conditional E-value: 2.4e-11
   TIGR01842 454 aLsgGqrqRiaLaRalygdPklvvLDePnanLDeeGeqalakalkelkarkitvvvithrpslle.lvdkilvlkdGalk 532
                 aLsgGq+ ++ La a++ +P++++LDeP   LD +   ala a+k+       v++i+h+ +  + l  ++  + dG+ +
  MMETSP1137-20121227|6705_1 880 ALSGGQKVKVVLAAAMWMEPHVIILDEPTNFLDRDSLGALACAVKNF---AGGVIIISHQREFYSaLCPEVWSVVDGRCT 956
                 7***************************************9997665...577888998776554144556666666655 PP

>> TIGR03873  F420-0_ABC_ATP: proposed F420-0 ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.8   0.0   1.5e-07   9.7e-06       7      49 ..     411     453 ..     406     461 .. 0.90
   2 !   50.2   0.0   6.6e-16   4.2e-14     117     210 ..     496     590 ..     478     607 .. 0.85
   3 !   20.6   0.0   7.1e-07   4.6e-05      15      57 ..     660     702 ..     645     726 .. 0.84
   4 !   33.0   0.0   1.2e-10   7.9e-09     135     220 ..     878     960 ..     859     964 .. 0.87

  Alignments for each domain:
  == domain 1    score: 22.8 bits;  conditional E-value: 1.5e-07
   TIGR03873   7 vsvraggrlivddvdvtaPaGaltgllGPnGsGkstllrllaG 49 
                  s+  g+r+++ +  ++   G+  gl+GPnG+Gkstl+r +a 
  MMETSP1137-20121227|6705_1 411 FSLAYGNRVLLHNTRLKLKRGKCYGLIGPNGAGKSTLMRSIAA 453
                 5778899********************************8875 PP

  == domain 2    score: 50.2 bits;  conditional E-value: 6.6e-16
   TIGR03873 117 vvdralarve.lssladrdlstlsGGerqrvhlaralaqePklllldePtnhldvsaqlellalvrelaaegvtvvvalhdlnlaasvcdhvvvl 210
                  +++++++v+ +s+l +  + +lsGG r r  l+ra+ +eP+lllldePtnh+dv+    l + +++l+++ +  ++  hd ++  +v+++ v  
  MMETSP1137-20121227|6705_1 496 DIAAMMTSVGfASDLMHGPVGALSGGWRMRLALSRAMLKEPELLLLDEPTNHVDVHGVAWLTKYIQDLSNKSISSMIVSHDTAFLDAVAQDCVHY 590
                 34445555552678999999*************************************************************99888777776655 PP

  == domain 3    score: 20.6 bits;  conditional E-value: 7.1e-07
   TIGR03873  15 livddvdvtaPaGaltgllGPnGsGkstllrllaGllapdaGe 57 
                   ++++ v++   +  +++G nG+Gkst+++l++G l p++Ge
  MMETSP1137-20121227|6705_1 660 NTLNNISVQVSMASRVAVIGVNGAGKSTMIKLMVGELLPNEGE 702
                 5678899999999999*************************97 PP

  == domain 4    score: 33.0 bits;  conditional E-value: 1.2e-10
   TIGR03873 135 lstlsGGerqrvhlaralaqePklllldePtnhldvsaqlellalvrelaaegvtvvvalhdlnlaasvcdhvvvldgGrvvaaGp 220
                 + +lsGG++ +v la a+  eP++++ldePtn ld  +  +l  +v++       v++  h  ++  ++c +v  +  Gr   +G+
  MMETSP1137-20121227|6705_1 878 IGALSGGQKVKVVLAAAMWMEPHVIILDEPTNFLDRDSLGALACAVKNF---AGGVIIISHQREFYSALCPEVWSVVDGRCTVTGS 960
                 678********************************77766666778888...45678888*************99999**999986 PP

>> TIGR03864  PQQ_ABC_ATP: ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.1   0.0     2e-09   1.3e-07       7      48 ..     411     452 ..     405     481 .. 0.86
   2 !   41.0   0.0     5e-13   3.2e-11     109     189 ..     493     573 ..     486     592 .. 0.82
   3 !   25.1   0.0   3.4e-08   2.2e-06       2      52 ..     645     697 ..     644     711 .. 0.84
   4 !   29.5   0.0   1.5e-09   9.9e-08     106     178 ..     852     926 ..     834     933 .. 0.84

  Alignments for each domain:
  == domain 1    score: 29.1 bits;  conditional E-value: 2e-09
   TIGR03864   7 lsfaygkrralddvsltvakgefvaLLGpnGaGkstLfsllt 48 
                  s ayg+r  l++  l++++g++  L+GpnGaGkstL+  ++
  MMETSP1137-20121227|6705_1 411 FSLAYGNRVLLHNTRLKLKRGKCYGLIGPNGAGKSTLMRSIA 452
                 6889*********************************96543 PP

  == domain 2    score: 41.0 bits;  conditional E-value: 5e-13
   TIGR03864 109 aeerieealarlglaer.aeekvreLnGGhrrrveiarallhePklLLlDeatvGLDiesraalveevrelvreeglsvLWa 189
                 ++e i+++++ +g+a    +  v +L+GG r r+ + ra+l eP+lLLlDe+t  +D++  a l++++++l++++ +s +  
  MMETSP1137-20121227|6705_1 493 SKEDIAAMMTSVGFASDlMHGPVGALSGGWRMRLALSRAMLKEPELLLLDEPTNHVDVHGVAWLTKYIQDLSNKS-ISSMIV 573
                 6788999999999976515678*************************************************9654.443333 PP

  == domain 3    score: 25.1 bits;  conditional E-value: 3.4e-08
   TIGR03864   2 leveglsfaygkr..ralddvsltvakgefvaLLGpnGaGkstLfslltrLye 52 
                 ++++++sf+y +r  ++l+++s++v+ ++ va++G+nGaGkst+++l+ + + 
  MMETSP1137-20121227|6705_1 645 IKMTDVSFRYPTReqNTLNNISVQVSMASRVAVIGVNGAGKSTMIKLMVGELL 697
                 57889999998652268*****************************9987554 PP

  == domain 4    score: 29.5 bits;  conditional E-value: 1.5e-09
   TIGR03864 106 raeaeerieealarlglaer..aeekvreLnGGhrrrveiarallhePklLLlDeatvGLDiesraalveevrel 178
                 ++ ++ +i+++l++++l+ +  + +k+ +L+GG++ +v +a a+  eP++++lDe+t  LD +s  al  +v++ 
  MMETSP1137-20121227|6705_1 852 KKLTALNIQKHLDNFNLEMQfgTYSKIGALSGGQKVKVVLAAAMWMEPHVIILDEPTNFLDRDSLGALACAVKNF 926
                 34577899****99887776225689**************************************99998888765 PP

>> TIGR03740  galliderm_ABC: lantibiotic protection ABC transporter, ATP-binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.7   0.0   1.6e-09     1e-07       7      47 ..     412     452 ..     408     466 .. 0.90
   2 !   40.2   0.0   9.7e-13   6.2e-11     101     192 ..     493     585 ..     471     605 .. 0.83
   3 !   29.6   0.0   1.7e-09   1.1e-07      11      56 ..     657     702 ..     645     720 .. 0.84
   4 !   20.1   0.0   1.4e-06     9e-05      99     181 ..     853     934 ..     839     958 .. 0.80

  Alignments for each domain:
  == domain 1    score: 29.7 bits;  conditional E-value: 1.6e-09
   TIGR03740   7 skkfkkqavvnnvslkvkknsvygllGpnGaGkstllkllt 47 
                 s +++++ +++n  lk+k+ + ygl+GpnGaGkstl++ ++
  MMETSP1137-20121227|6705_1 412 SLAYGNRVLLHNTRLKLKRGKCYGLIGPNGAGKSTLMRSIA 452
                 56899********************************9886 PP

  == domain 2    score: 40.2 bits;  conditional E-value: 9.7e-13
   TIGR03740 101 pesrieevlkivdlent.ekkkakqfslGmkqrlGiaiallnkPkllildePtnGldPlGiqelreliksfpekGitvilsshilsevellad 192
                 +++ i  +++ v++ ++     ++ +s G + rl ++ a+l++P+ll+ldePtn +d  G+  l + i+ +++k i+ ++ sh  + ++ +a 
  MMETSP1137-20121227|6705_1 493 SKEDIAAMMTSVGFASDlMHGPVGALSGGWRMRLALSRAMLKEPELLLLDEPTNHVDVHGVAWLTKYIQDLSNKSISSMIVSHDTAFLDAVAQ 585
                 56667777888887654156689999*********************************************************8888887763 PP

  == domain 3    score: 29.6 bits;  conditional E-value: 1.7e-09
   TIGR03740  11 kkqavvnnvslkvkknsvygllGpnGaGkstllklltGllrktsGe 56 
                 ++q+ +nn+s++v   s  +++G+nGaGkst++kl++G l +++Ge
  MMETSP1137-20121227|6705_1 657 REQNTLNNISVQVSMASRVAVIGVNGAGKSTMIKLMVGELLPNEGE 702
                 6899**********************************99998886 PP

  == domain 4    score: 20.1 bits;  conditional E-value: 1.4e-06
   TIGR03740  99 glpesrieevlkivdlent..ekkkakqfslGmkqrlGiaiallnkPkllildePtnGldPlGiqelreliksfpekGitvilss 181
                 +l   +i++ l+  +le +  +  k + +s G k ++ +a a+  +P+++ildePtn ld   +  l   +k f      vi+ s
  MMETSP1137-20121227|6705_1 853 KLTALNIQKHLDNFNLEMQfgTYSKIGALSGGQKVKVVLAAAMWMEPHVIILDEPTNFLDRDSLGALACAVKNFAG--G-VIIIS 934
                 5667788888988888876224568889999*****************************9888888888888864..2.33334 PP

>> TIGR03522  GldA_ABC_ATP: gliding motility-associated ABC transporter ATP-binding subunit GldA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.3   0.0   1.2e-07     8e-06       9      50 ..     412     453 ..     406     480 .. 0.89
   2 !   35.1   0.0   3.3e-11   2.1e-09     108     209 ..     491     594 ..     481     623 .. 0.83
   3 !   23.4   0.0   1.2e-07   7.8e-06       4      58 ..     646     702 ..     644     735 .. 0.81
   4 !   38.0   0.0   4.2e-12   2.7e-10      90     274 ..     836    1026 ..     828    1036 .. 0.65

  Alignments for each domain:
  == domain 1    score: 23.3 bits;  conditional E-value: 1.2e-07
   TIGR03522   9 sklygkqkaldevsfeaekGeivGflGPnGaGkstlmkiltg 50 
                 s  yg++  l +  ++ ++G+  G++GPnGaGkstlm+ +++
  MMETSP1137-20121227|6705_1 412 SLAYGNRVLLHNTRLKLKRGKCYGLIGPNGAGKSTLMRSIAA 453
                 668999*******************************98876 PP

  == domain 2    score: 35.1 bits;  conditional E-value: 3.3e-11
   TIGR03522 108 rklkkrveelielvGlkae.qhkkigalskGyrqrvGlakallhdPkvlildePttGldPnqlveirevikeiakdk.tvilsthimqevealcdrviiinkGk 209
                  k k+ +++++  vG+ ++  h  +gals G+r r  l++a+l +P++l+ldePt  +d   +  + + i++++++  + ++ +h    ++a+ ++ +  +k +
  MMETSP1137-20121227|6705_1 491 DKSKEDIAAMMTSVGFASDlMHGPVGALSGGWRMRLALSRAMLKEPELLLLDEPTNHVDVHGVAWLTKYIQDLSNKSiSSMIVSHDTAFLDAVAQDCVHYEKNR 594
                 467999**********98846999**********************************************9998653134555676777777777777666655 PP

  == domain 3    score: 23.4 bits;  conditional E-value: 1.2e-07
   TIGR03522   4 evsdlsklyg..kqkaldevsfeaekGeivGflGPnGaGkstlmkiltgylkadsGs 58 
                 +++d+s  y   +q++l+++s ++   + v  +G nGaGkst++k++ g l ++ G 
  MMETSP1137-20121227|6705_1 646 KMTDVSFRYPtrEQNTLNNISVQVSMASRVAVIGVNGAGKSTMIKLMVGELLPNEGE 702
                 566777777522699**********************************99998763 PP

  == domain 4    score: 38.0 bits;  conditional E-value: 4.2e-12
   TIGR03522   90 lyvreylefsaalyklkgrklkkrveelielvGlkae..qhkkigalskGyrqrvGlakallhdPkvlildePttGldPnqlveirevikeiakdktvilsthimqevealcdrviiinkGkivadkk..leelkaaek....kkvievefeeeidlqll.ekleevsevkklkgntykltveteedvrkeifd 274 
                  + v e  +f+a+    k ++   ++++ +++  l+ +  ++ kigals G + +v la+a+  +P+v+ildePt  ld + l ++   +k+ a    vi+ +h      alc +v  +  G+  +  +  +   ++a k    + +    +++e + +++ +k+ee +++kk+ ++++k   +  +++rk  ++
  MMETSP1137-20121227|6705_1  836 MQVDERXAFEASGIATK-KLTALNIQKHLDNFNLEMQfgTYSKIGALSGGQKVKVVLAAAMWMEPHVIILDEPTNFLDRDSLGALACAVKNFAG--GVIIISHQREFYSALCPEVWSVVDGRCTVTGSewMGAAEKARKkaekEAAKSASLTKEDKFDAFgNKIEEKKQAKKIPKSELKKLKKRVAEMRKGGME 1026
                  56666677776544444.4556678888888776553228***************************************************986..567778999999*******9988888765433112222222110000112222222222222221234444445555555555555555555555555 PP

>> TIGR02673  FtsE: cell division ATP-binding protein FtsE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.0   2.8e-06   0.00018       9      50 ..     413     453 ..     408     458 .. 0.86
   2 !   44.0   0.0   6.7e-14   4.3e-12     112     212 ..     491     592 ..     484     594 .. 0.90
   3 !   32.1   0.0   2.8e-10   1.8e-08       1      58 [.     644     702 ..     644     721 .. 0.91
   4 !   23.6   0.0   1.2e-07   7.6e-06     116     201 ..     857     941 ..     840     954 .. 0.74

  Alignments for each domain:
  == domain 1    score: 19.1 bits;  conditional E-value: 2.8e-06
   TIGR02673   9 keyaagveaLkdvslkiekgeflfltGasGaGkttllklllg 50 
                 ++y ++   L++  lk+++g+ + l+G+ GaGk+tl++ + +
  MMETSP1137-20121227|6705_1 413 LAY-GNRVLLHNTRLKLKRGKCYGLIGPNGAGKSTLMRSIAA 453
                 556.556689***************************98865 PP

  == domain 2    score: 44.0 bits;  conditional E-value: 6.7e-14
   TIGR02673 112 eeiqkrveevlelvgledkakalp.eelsgGeqqRvaiaRaivnkPelllaDePtGnlDdelserildllkelnkrGttvivathdeelvervkkrvlelek 212
                 ++ ++ + ++++ vg++    + p  +lsgG + R a+ Ra++++Pelll DePt  +D +  + + + +++l+++ ++ ++++hd++++++v++  ++ ek
  MMETSP1137-20121227|6705_1 491 DKSKEDIAAMMTSVGFASDLMHGPvGALSGGWRMRLALSRAMLKEPELLLLDEPTNHVDVHGVAWLTKYIQDLSNKSISSMIVSHDTAFLDAVAQDCVHYEK 592
                 5678889999999**987766666279******************************************************************999888765 PP

  == domain 3    score: 32.1 bits;  conditional E-value: 2.8e-10
   TIGR02673   1 iielekvskeya.agveaLkdvslkiekgeflfltGasGaGkttllklllgaekpsrGe 58 
                 +i++++vs++y+ ++ ++L+++s++++ ++ + ++G  GaGk+t++kl++g + p++Ge
  MMETSP1137-20121227|6705_1 644 LIKMTDVSFRYPtREQNTLNNISVQVSMASRVAVIGVNGAGKSTMIKLMVGELLPNEGE 702
                 589********9567889**************************************997 PP

  == domain 4    score: 23.6 bits;  conditional E-value: 1.2e-07
   TIGR02673 116 krveevlelvgledkakalpe..elsgGeqqRvaiaRaivnkPelllaDePtGnlDdelserildllkelnkrGttvivathdeelve 201
                  ++++ l+  +le +  ++++  +lsgG + +v +a a+  +P++++ DePt  lD +    +     ++++    vi+ +h++e+++
  MMETSP1137-20121227|6705_1 857 LNIQKHLDNFNLEMQFGTYSKigALSGGQKVKVVLAAAMWMEPHVIILDEPTNFLDRDSLGALA---CAVKNFAGGVIIISHQREFYS 941
                 467777888888877776654338********************************88654443...344444456777788887765 PP

>> TIGR01188  drrA: daunorubicin resistance ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.4   0.0   5.4e-08   3.4e-06       3      39 ..     415     451 ..     413     457 .. 0.90
   2 !   39.9   0.0     1e-12   6.4e-11     101     190 ..     493     583 ..     465     593 .. 0.85
   3 !   20.6   0.1   7.7e-07   4.9e-05       7      50 ..     660     703 ..     655     708 .. 0.92
   4 !   34.6   0.0     4e-11   2.6e-09     104     258 ..     858    1003 ..     843    1035 .. 0.64

  Alignments for each domain:
  == domain 1    score: 24.4 bits;  conditional E-value: 5.4e-08
   TIGR01188   3 ygefkAvdgvnlkveegevfglLGPnGAGKtttikmL 39 
                 yg+ + +++  lk+++g+ +gl+GPnGAGK+t+++ +
  MMETSP1137-20121227|6705_1 415 YGNRVLLHNTRLKLKRGKCYGLIGPNGAGKSTLMRSI 451
                 8999999999**********************99855 PP

  == domain 2    score: 39.9 bits;  conditional E-value: 1e-12
   TIGR01188 101 aeeraeellelvelk.eaadkkvktysgGmrrrlelaasliaqPevlfLDEPtiGLDprtrraiwdlieelkkegvtilltthyleeadkl 190
                  +e ++ ++  v +  +  + +v+ +sgG r rl l+++++++Pe+l LDEPt  +D++  + + ++i++l ++ ++ ++ +h+    d++
  MMETSP1137-20121227|6705_1 493 SKEDIAAMMTSVGFAsDLMHGPVGALSGGWRMRLALSRAMLKEPELLLLDEPTNHVDVHGVAWLTKYIQDLSNKSISSMIVSHDTAFLDAV 583
                 4455667777777652567789***********************************************************9997655555 PP

  == domain 3    score: 20.6 bits;  conditional E-value: 7.7e-07
   TIGR01188   7 kAvdgvnlkveegevfglLGPnGAGKtttikmLttllkPdsGta 50 
                 + +++++++v+  + ++++G nGAGK+t+ik++ + l P++G++
  MMETSP1137-20121227|6705_1 660 NTLNNISVQVSMASRVAVIGVNGAGKSTMIKLMVGELLPNEGEG 703
                 568899**********************************9975 PP

  == domain 4    score: 34.6 bits;  conditional E-value: 4e-11
   TIGR01188  104 raeellelvelkea..adkkvktysgGmrrrlelaasliaqPevlfLDEPtiGLDprtrraiwdlieelkkegvtilltthyleeadkladrvaiidkGkiiaedtpeeLKervgkevveverrdikelkkevsllaaelteslleleavevdsdkv 258 
                   +++ l+ ++l  +  +  k++ +sgG++ ++ laa++  +P+v+ LDEPt  LD  +  a+   ++++      +++ +h+ e   +l+ +v  +  G+   +++        +k   + e++++k+ + +++ ++  + ++      +e +++ +
  MMETSP1137-20121227|6705_1  858 NIQKHLDNFNLEMQfgTYSKIGALSGGQKVKVVLAAAMWMEPHVIILDEPTNFLDRDSLGALACAVKNFA---GGVIIISHQREFYSALCPEVWSVVDGRCTVTGSEWMGA--AEKARKKAEKEAAKSASLTKEDKFDAFGNK------IEEKKQAK 1003
                  566677777766542256799**********************************998888888777765...5688899999999*******999999998888743222..222222222222332222222222222222......22222222 PP

>> TIGR03410  urea_trans_UrtE: urea ABC transporter, ATP-binding protein UrtE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.6   0.0     5e-08   3.2e-06       7      48 ..     412     453 ..     408     461 .. 0.92
   2 !   41.5   0.0   3.5e-13   2.2e-11     107     207 ..     493     592 ..     475     605 .. 0.84
   3 !   23.8   0.0   8.7e-08   5.6e-06      12      56 ..     658     702 ..     645     722 .. 0.78
   4 !   26.1   0.0   1.7e-08   1.1e-06     128     214 ..     877     959 ..     844     973 .. 0.75

  Alignments for each domain:
  == domain 1    score: 24.6 bits;  conditional E-value: 5e-08
   TIGR03410   7 evaYgesevlrdvslevekgevvavlGrngvGkttllkalvg 48 
                 ++aYg+  +l++ +l++++g++  ++G ng+Gk+tl++++ +
  MMETSP1137-20121227|6705_1 412 SLAYGNRVLLHNTRLKLKRGKCYGLIGPNGAGKSTLMRSIAA 453
                 679************************************976 PP

  == domain 2    score: 41.5 bits;  conditional E-value: 3.5e-13
   TIGR03410 107 ekkipeeiyelFPvlkemlkRrgGdLsGGqqqqlaiaRaLvtePklllLDePteGiqPsiikeiekvikelakekdlaillveqvldfaleladrylvler 207
                 +k+ ++ +++     +++++   G LsGG +  la++Ra+++eP+lllLDePt+ +    ++ + k i++l+++  ++ ++v +   f  ++a+  +  e+
  MMETSP1137-20121227|6705_1 493 SKEDIAAMMTSVGFASDLMHGPVGALSGGWRMRLALSRAMLKEPELLLLDEPTNHVDVHGVAWLTKYIQDLSNK-SISSMIVSHDTAFLDAVAQDCVHYEK 592
                 45555556666667788999999************************************************985.78888888999999999998776665 PP

  == domain 3    score: 23.8 bits;  conditional E-value: 8.7e-08
   TIGR03410  12 esevlrdvslevekgevvavlGrngvGkttllkalvgllkvksGe 56 
                 e + l+++s++v+  + vav+G ng+Gk+t++k +vg l  ++Ge
  MMETSP1137-20121227|6705_1 658 EQNTLNNISVQVSMASRVAVIGVNGAGKSTMIKLMVGELLPNEGE 702
                 5679**********************************9999985 PP

  == domain 4    score: 26.1 bits;  conditional E-value: 1.7e-08
   TIGR03410 128 rgGdLsGGqqqqlaiaRaLvtePklllLDePteGiqPsiikeiekvikelakekdlaillveqvldfaleladrylvlerGevvaeg 214
                 + G LsGGq+ ++ +a a+ +eP++++LDePt+ +    +  ++ ++k+ a     +++++ ++ +f  +l  +++ +  G+ + +g
  MMETSP1137-20121227|6705_1 877 KIGALSGGQKVKVVLAAAMWMEPHVIILDEPTNFLDRDSLGALACAVKNFAG----GVIIISHQREFYSALCPEVWSVVDGRCTVTG 959
                 679*****************************98887777777777666654....4555555556666666666666666666555 PP

>> TIGR01166  cbiO: cobalt ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1   0.0   5.9e-07   3.8e-05       5      40 ..     419     453 ..     415     459 .. 0.86
   2 !   38.1   0.0   3.5e-12   2.2e-10     104     188 ..     493     578 ..     460     580 .. 0.85
   3 !   26.7   0.0   1.1e-08   7.4e-07       4      48 ..     658     702 ..     654     709 .. 0.93
   4 !   29.2   0.0   1.9e-09   1.2e-07     124     182 ..     877     933 ..     835     939 .. 0.82

  Alignments for each domain:
  == domain 1    score: 21.1 bits;  conditional E-value: 5.9e-07
   TIGR01166   5 aevlkglnlavergevlallGanGaGkstlllhlnG 40 
                 +  l++  l+++rg+  +l+G+nGaGkstl++ ++ 
  MMETSP1137-20121227|6705_1 419 V-LLHNTRLKLKRGKCYGLIGPNGAGKSTLMRSIAA 453
                 4.688999***********************99876 PP

  == domain 2    score: 38.1 bits;  conditional E-value: 3.5e-12
   TIGR01166 104 verrvrealaavd.isgleerpthllsgGekkrvaiagavalrpdvllldePtagldpaGaeqlleilrklreeGktvvisthdvd 188
                  ++ +   ++ v+ +s+l + p+  lsgG + r+a++ a+  +p++llldePt  +d +G+  l++ ++ l ++  + +i +hd +
  MMETSP1137-20121227|6705_1 493 SKEDIAAMMTSVGfASDLMHGPVGALSGGWRMRLALSRAMLKEPELLLLDEPTNHVDVHGVAWLTKYIQDLSNKSISSMIVSHDTA 578
                 4555666677777358999****************************************************************975 PP

  == domain 3    score: 26.7 bits;  conditional E-value: 1.1e-08
   TIGR01166   4 eaevlkglnlavergevlallGanGaGkstlllhlnGllrPksGk 48 
                 e + l++++++v+ ++++a++G nGaGkst+++ + G l P++G+
  MMETSP1137-20121227|6705_1 658 EQNTLNNISVQVSMASRVAVIGVNGAGKSTMIKLMVGELLPNEGE 702
                 56789*************************************995 PP

  == domain 4    score: 29.2 bits;  conditional E-value: 1.9e-09
   TIGR01166 124 pthllsgGekkrvaiagavalrpdvllldePtagldpaGaeqlleilrklreeGktvvi 182
                  +  lsgG+k +v +a+a+ ++p+v++ldePt  ld +    l+ +++++   G  ++i
  MMETSP1137-20121227|6705_1 877 KIGALSGGQKVKVVLAAAMWMEPHVIILDEPTNFLDRDSLGALACAVKNFA--GGVIII 933
                 5678**********************************9999999988763..444444 PP

>> TIGR03608  L_ocin_972_ABC: putative bacteriocin export ABC transporter, lactococcin 972 group
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.6   0.0   9.9e-08   6.4e-06       6      45 ..     413     452 ..     409     462 .. 0.91
   2 !   43.7   0.0     7e-14   4.5e-12     110     198 ..     492     581 ..     481     588 .. 0.88
   3 !   16.5   0.0   1.5e-05   0.00094       9      66 ..     657     716 ..     647     729 .. 0.75
   4 !   28.1   0.0   4.1e-09   2.6e-07     112     194 ..     856     937 ..     841     946 .. 0.76

  Alignments for each domain:
  == domain 1    score: 23.6 bits;  conditional E-value: 9.9e-08
   TIGR03608   6 kkfkdkeilkklslkiekGelvaivGesGsGKstlLnilg 45 
                   ++++++l++++lk+++G+++ ++G  G+GKstl+  ++
  MMETSP1137-20121227|6705_1 413 LAYGNRVLLHNTRLKLKRGKCYGLIGPNGAGKSTLMRSIA 452
                 5799*******************************98876 PP

  == domain 2    score: 43.7 bits;  conditional E-value: 7e-14
   TIGR03608 110 ekekkkkevlekvgl.ekklkkkiyelsgGekqRvalarillkeselilADEPtgsLDkknreevlellkelkeegktiiivtHdpevae 198
                 + ++ +  ++ +vg+ +  ++  +  lsgG + R+al r++lke+el+l DEPt  +D +  + + +++++l ++    +iv Hd++  +
  MMETSP1137-20121227|6705_1 492 KSKEDIAAMMTSVGFaSDLMHGPVGALSGGWRMRLALSRAMLKEPELLLLDEPTNHVDVHGVAWLTKYIQDLSNKSISSMIVSHDTAFLD 581
                 445667889999**96666788999************************************************************98765 PP

  == domain 3    score: 16.5 bits;  conditional E-value: 1.5e-05
   TIGR03608   9 kdkeilkklslkiekGelvaivGesGsGKstlLnil.g.llekkdsgkvilegkekaklk 66 
                 ++++ l+++s++++  + va++G  G+GKst++ ++ g ll ++ +g+ +++ + +++l 
  MMETSP1137-20121227|6705_1 657 REQNTLNNISVQVSMASRVAVIGVNGAGKSTMIKLMvGeLLPNEGEGSPVIQRHPNMRLA 716
                 56789***************************9976232456666676666666666655 PP

  == domain 4    score: 28.1 bits;  conditional E-value: 4.1e-09
   TIGR03608 112 ekkkkevlekvglekk..lkkkiyelsgGekqRvalarillkeselilADEPtgsLDkknreevlellkelkeegktiiivtHdp 194
                   +++++l++++le +  +  ki  lsgG+k +v la ++  e+++i+ DEPt  LD+++  ++    + +k+    +ii+ H+ 
  MMETSP1137-20121227|6705_1 856 ALNIQKHLDNFNLEMQfgTYSKIGALSGGQKVKVVLAAAMWMEPHVIILDEPTNFLDRDSLGALA---CAVKNFAGGVIIISHQR 937
                 4467788999999665125679***********************************88765544...44445455566667765 PP

>> TIGR00972  3a0107s01c2: phosphate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.5   0.0   1.2e-08   7.9e-07       6      58 ..     410     460 ..     406     481 .. 0.82
   2 !   39.5   0.0   1.3e-12   8.3e-11     137     216 ..     510     590 ..     492     609 .. 0.84
   3 !   15.0   0.0   3.9e-05    0.0025       3      47 ..     646     692 ..     644     698 .. 0.84
   4 !   30.9   0.0   5.6e-10   3.6e-08     141     210 ..     877     944 ..     839     975 .. 0.75

  Alignments for each domain:
  == domain 1    score: 26.5 bits;  conditional E-value: 1.2e-08
   TIGR00972   6 nlklfygekealkdvnleikknkvtaliGpsGcGkstllrslnrlndlveevr 58 
                 +++l yg++  l++  l++k+ k  +liGp G+Gkstl+rs+    dlve++ 
  MMETSP1137-20121227|6705_1 410 EFSLAYGNRVLLHNTRLKLKRGKCYGLIGPNGAGKSTLMRSIA--ADLVEGFP 460
                 57899************************************96..46666655 PP

  == domain 2    score: 39.5 bits;  conditional E-value: 1.3e-12
   TIGR00972 137 klkksalsLsGGqqqrlciaralavePevlLlDePtsaLDpiatekieeliqeLkkk.ytivivthnmqqaarvsdktaff 216
                  ++    +LsGG + rl+++ra+  ePe+lLlDePt  +D   ++ + + iq+L++k +  +iv h+ ++   v++  + +
  MMETSP1137-20121227|6705_1 510 LMHGPVGALSGGWRMRLALSRAMLKEPELLLLDEPTNHVDVHGVAWLTKYIQDLSNKsISSMIVSHDTAFLDAVAQDCVHY 590
                 55666678**********************************************9775999*******9999999877665 PP

  == domain 3    score: 15.0 bits;  conditional E-value: 3.9e-05
   TIGR00972   3 evknlklfyg..ekealkdvnleikknkvtaliGpsGcGkstllrsl 47 
                 +++++++ y   e+++l++++++++  + +a+iG  G+Gkst+++ +
  MMETSP1137-20121227|6705_1 646 KMTDVSFRYPtrEQNTLNNISVQVSMASRVAVIGVNGAGKSTMIKLM 692
                 6667777775225679***************************9965 PP

  == domain 4    score: 30.9 bits;  conditional E-value: 5.6e-10
   TIGR00972 141 salsLsGGqqqrlciaralavePevlLlDePtsaLDpiatekieeliqeLkkkytivivthnmqqaarvs 210
                 +  +LsGGq+ ++++a a+ +eP+v++lDePt  LD  +   +   +++ +    ++i+ h+ ++ + + 
  MMETSP1137-20121227|6705_1 877 KIGALSGGQKVKVVLAAAMWMEPHVIILDEPTNFLDRDSLGALACAVKNFAG--GVIIISHQREFYSALC 944
                 4457*********************************999999988888876..4677777766655555 PP

>> TIGR02868  CydC: thiol reductant ABC exporter, CydC subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.4       6.3     4e+02     232     300 ..      88     159 ..      81     174 .. 0.80
   2 !   16.0   0.0   1.2e-05   0.00077     324     382 ..     392     452 ..     316     458 .. 0.63
   3 !   40.4   0.0     5e-13   3.2e-11     466     529 ..     512     576 ..     483     577 .. 0.77
   4 !   36.9   0.0   5.6e-12   3.6e-10     329     391 ..     639     702 ..     623     723 .. 0.91
   5 !   21.6   0.0   2.5e-07   1.6e-05     471     509 ..     880     918 ..     850     937 .. 0.78

  Alignments for each domain:
  == domain 1    score: -2.9 bits;  conditional E-value: 6.3
   TIGR02868 232 raaaaealgaaltllaaGlavllallvgveavadgrlapvalAvlvLlpLaafe...alaalpaAaqqltrv 300
                  +++aea gaal+  +  +av ++l +  ++  ++r +  + Av ++ +La      + a lp+++++l +v
  MMETSP1137-20121227|6705_1  88 VQQKAEAAGAALMESLNPVAVDGMLPLLFKQFEEHRWQTKLGAVQMFAQLAXASpktISASLPTVVVKLMEV 159
                 567888999999999999999999999999999999999999999999999875221456788888777766 PP

  == domain 2    score: 16.0 bits;  conditional E-value: 1.2e-05
   TIGR02868 324 aaeaaasekptle.lrdlsvsypgaee.vlkgvsldlepGervavvGasGaGKstLlalla 382
                 ++e++++++ +le l d ++s   +++  l++ +l+l+ G+   ++G+ GaGKstL+  +a
  MMETSP1137-20121227|6705_1 392 KEEEVVEDHDDLEvLCDCEFSLAYGNRvLLHNTRLKLKRGKCYGLIGPNGAGKSTLMRSIA 452
                 333333344444414566777666666589**************************98765 PP

  == domain 3    score: 40.4 bits;  conditional E-value: 5e-13
   TIGR02868 466 geggarlSGGerqRlalARaLladapvllLDEPtehLDaeteeelledLlaaeegrt.vvlvthr 529
                 ++   +lSGG r Rlal Ra+l++ ++llLDEPt h+D++  + l + + + +++    ++v+h+
  MMETSP1137-20121227|6705_1 512 HGPVGALSGGWRMRLALSRAMLKEPELLLLDEPTNHVDVHGVAWLTKYIQDLSNKSIsSMIVSHD 576
                 3344579*********************************9999999998766655546677775 PP

  == domain 4    score: 36.9 bits;  conditional E-value: 5.6e-12
   TIGR02868 329 asekptlelrdlsvsypgaee.vlkgvsldlepGervavvGasGaGKstLlallaglldplkGe 391
                 +++k+ +++ d+s++yp+ e+  l+++s++++  +rvav+G  GaGKst+++l++g l p++Ge
  MMETSP1137-20121227|6705_1 639 SKTKALIKMTDVSFRYPTREQnTLNNISVQVSMASRVAVIGVNGAGKSTMIKLMVGELLPNEGE 702
                 44678899**********9999***************************************997 PP

  == domain 5    score: 21.6 bits;  conditional E-value: 2.5e-07
   TIGR02868 471 rlSGGerqRlalARaLladapvllLDEPtehLDaeteee 509
                 +lSGG++ +++lA a+  +  v++LDEPt  LD +   +
  MMETSP1137-20121227|6705_1 880 ALSGGQKVKVVLAAAMWMEPHVIILDEPTNFLDRDSLGA 918
                 79*******************************876544 PP

>> TIGR02315  ABC_phnC: phosphonate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.5   0.0   1.3e-08   8.4e-07      10      49 ..     414     452 ..     409     478 .. 0.87
   2 !   32.3   0.0   2.2e-10   1.4e-08     112     205 ..     483     576 ..     464     605 .. 0.83
   3 !   24.4   0.0   5.5e-08   3.5e-06       1      49 [.     644     693 ..     644     716 .. 0.85
   4 !   27.5   0.0   6.3e-09     4e-07     129     191 ..     862     926 ..     845     968 .. 0.74

  Alignments for each domain:
  == domain 1    score: 26.5 bits;  conditional E-value: 1.3e-08
   TIGR02315  10 vypngkqalknvnleikkGelvaviGlsGaGkstllrsin 49 
                  y+ ++  l+n+ l++k+G+  ++iG+ GaGkstl+rsi 
  MMETSP1137-20121227|6705_1 414 AYG-NRVLLHNTRLKLKRGKCYGLIGPNGAGKSTLMRSIA 452
                 677.7889******************************96 PP

  == domain 2    score: 32.3 bits;  conditional E-value: 2.2e-10
   TIGR02315 112 ksllglfseedkekAlelLervgla.elaakradqLsGGqqqRvaiaRalaqqpklilaDEPiasLDpksskqvmdllkrinkekgitvivnlHq 205
                   +   ++++ ke   ++++ vg+a +l +  + +LsGG + R+a++Ra++++p+l+l DEP+  +D +    + ++++++++++  ++iv+ H+
  MMETSP1137-20121227|6705_1 483 DFVHMDLPDKSKEDIAAMMTSVGFAsDLMHGPVGALSGGWRMRLALSRAMLKEPELLLLDEPTNHVDVHGVAWLTKYIQDLSNKSISSMIVS-HD 576
                 555566777888888899999998636788899************************************************98876666664.54 PP

  == domain 3    score: 24.4 bits;  conditional E-value: 5.5e-08
   TIGR02315   1 llevenlskvypng.kqalknvnleikkGelvaviGlsGaGkstllrsin 49 
                 l++++++s +yp+  +++l+n++++++    vaviG  GaGkst+++ + 
  MMETSP1137-20121227|6705_1 644 LIKMTDVSFRYPTReQNTLNNISVQVSMASRVAVIGVNGAGKSTMIKLMV 693
                 5889999****9861568****************************9764 PP

  == domain 4    score: 27.5 bits;  conditional E-value: 6.3e-09
   TIGR02315 129 lLervglael..aakradqLsGGqqqRvaiaRalaqqpklilaDEPiasLDpksskqvmdllkri 191
                  L++++l+ +   +++  +LsGGq+ +v +a a+  +p++i+ DEP+  LD  s   +  ++k+ 
  MMETSP1137-20121227|6705_1 862 HLDNFNLEMQfgTYSKIGALSGGQKVKVVLAAAMWMEPHVIILDEPTNFLDRDSLGALACAVKNF 926
                 56666655542278999**********************************98866555555544 PP

>> TIGR02211  LolD_lipo_ex: lipoprotein releasing system, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.5   0.0   0.00053     0.034      20      51 ..     420     451 ..     411     457 .. 0.89
   2 !   47.2   0.0   6.5e-15   4.2e-13     117     209 ..     492     584 ..     484     597 .. 0.88
   3 !   22.5   0.0   2.3e-07   1.5e-05       5      61 ..     648     702 ..     644     725 .. 0.83
   4 !   25.4   0.0     3e-08   1.9e-06     123     204 ..     860     939 ..     831     955 .. 0.79

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 0.00053
   TIGR02211  20 vlkgvsleiekgelvaivGssGsGkstllhll 51 
                 +l++  l++++g+  +++G  G+Gkstl+  +
  MMETSP1137-20121227|6705_1 420 LLHNTRLKLKRGKCYGLIGPNGAGKSTLMRSI 451
                 689*************************9765 PP

  == domain 2    score: 47.2 bits;  conditional E-value: 6.5e-15
   TIGR02211 117 eakerakellekvglekrinkkp.selsGGerqrvaiaralvnkPklvladePtgnldkktakkifelllelnkekntallvvthdlelakkld 209
                 ++ke  ++++  vg+   + + p ++lsGG r r a++ra++++P+l+l dePt ++d +    + + +++l + k ++ ++v+hd+ + + + 
  MMETSP1137-20121227|6705_1 492 KSKEDIAAMMTSVGFASDLMHGPvGALSGGWRMRLALSRAMLKEPELLLLDEPTNHVDVHGVAWLTKYIQDLSN-KSISSMIVSHDTAFLDAVA 584
                 5778888999*****99999988579**********************************************75.6788899****99987665 PP

  == domain 3    score: 22.5 bits;  conditional E-value: 2.3e-07
   TIGR02211   5 enltksykegkleievlkgvsleiekgelvaivGssGsGkstllhllggldkptsGe 61 
                 ++++ +y     e ++l+++s++++ +  va++G  G+Gkst++ l+ g   p +Ge
  MMETSP1137-20121227|6705_1 648 TDVSFRYP--TREQNTLNNISVQVSMASRVAVIGVNGAGKSTMIKLMVGELLPNEGE 702
                 55555554..456678******************************99977776665 PP

  == domain 4    score: 25.4 bits;  conditional E-value: 3e-08
   TIGR02211 123 kellekvglekrin..kkpselsGGerqrvaiaralvnkPklvladePtgnldkktakkifelllelnkekntallvvthdlel 204
                 ++ l++++le +     k ++lsGG++ +v +a a+  +P++++ dePt  ld+++  ++ + +++       ++++++h++e+
  MMETSP1137-20121227|6705_1 860 QKHLDNFNLEMQFGtySKIGALSGGQKVKVVLAAAMWMEPHVIILDEPTNFLDRDSLGALACAVKN----FAGGVIIISHQREF 939
                 566778888887651146799*********************************987776666554....34567777777766 PP

>> TIGR01978  sufC: FeS assembly ATPase SufC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.2   0.0   2.6e-07   1.7e-05      11      48 ..     416     453 ..     407     458 .. 0.89
   2 !   32.1   0.0   2.5e-10   1.6e-08     144     219 ..     517     592 ..     466     617 .. 0.86
   3 !   19.6   0.0   1.6e-06    0.0001      11      49 ..     657     695 ..     646     710 .. 0.90
   4 !   31.2   0.0   4.6e-10   2.9e-08     123     228 ..     859     960 ..     838     972 .. 0.86

  Alignments for each domain:
  == domain 1    score: 22.2 bits;  conditional E-value: 2.6e-07
   TIGR01978  11 edkeiLkglnlevkkGevhaimGpnGsGkstLskvlag 48 
                  ++ +L++  l++k+G+ + ++GpnG+GkstL++ +a 
  MMETSP1137-20121227|6705_1 416 GNRVLLHNTRLKLKRGKCYGLIGPNGAGKSTLMRSIAA 453
                 678899***************************99986 PP

  == domain 2    score: 32.1 bits;  conditional E-value: 2.5e-10
   TIGR01978 144 GfsGGekkrneilqlallePklaiLDeiDsGlDvDalkivaegvnklreeekalliithyerllelikPdvvhvll 219
                   sGG + r  + + +l eP+l +LDe    +Dv ++  +++ +++l +++ + +i++h + +l++++ d vh   
  MMETSP1137-20121227|6705_1 517 ALSGGWRMRLALSRAMLKEPELLLLDEPTNHVDVHGVAWLTKYIQDLSNKSISSMIVSHDTAFLDAVAQDCVHYEK 592
                 47**********************************************************************9655 PP

  == domain 3    score: 19.6 bits;  conditional E-value: 1.6e-06
   TIGR01978  11 edkeiLkglnlevkkGevhaimGpnGsGkstLskvlagh 49 
                  +++ L++++++v+    +a++G nG+Gkst+ k ++g+
  MMETSP1137-20121227|6705_1 657 REQNTLNNISVQVSMASRVAVIGVNGAGKSTMIKLMVGE 695
                 57899******************************9996 PP

  == domain 4    score: 31.2 bits;  conditional E-value: 4.6e-10
   TIGR01978 123 lkeklelleldeelleRslneGfsGGekkrneilqlallePklaiLDeiDsGlDvDalkivaegvnklreeekalliithyerllelikPdvvhvlldGrivksGd 228
                 ++++l+ ++l+ ++ + s     sGG k +  +   + +eP+++iLDe    lD D+l ++a  v++++    +++ii+h++++ +++ P+v +v +dGr   +G+
  MMETSP1137-20121227|6705_1 859 IQKHLDNFNLEMQFGTYSKIGALSGGQKVKVVLAAAMWMEPHVIILDEPTNFLDRDSLGALACAVKNFA---GGVIIISHQREFYSALCPEVWSV-VDGRCTVTGS 960
                 56677777777777777777789***************************************9999886...69****************97766.6899888876 PP

>> TIGR00960  3a0501s02: type II secretory pathway family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   4.3e-05    0.0028      15      50 ..     417     452 ..     410     458 .. 0.88
   2 !   37.2   0.0   8.4e-12   5.4e-10     112     213 ..     490     592 ..     484     595 .. 0.93
   3 !   33.8   0.0   9.1e-11   5.8e-09       1      59 [.     644     702 ..     644     716 .. 0.95
   4 !   19.0   0.0   3.1e-06    0.0002     138     200 ..     880     939 ..     843     954 .. 0.75

  Alignments for each domain:
  == domain 1    score: 15.3 bits;  conditional E-value: 4.3e-05
   TIGR00960  15 aelaldnvtvkiekGelvflvGhsGaGkstllklil 50 
                 +++ l+n  +k+++G+   l+G+ GaGkstl++ i 
  MMETSP1137-20121227|6705_1 417 NRVLLHNTRLKLKRGKCYGLIGPNGAGKSTLMRSIA 452
                 566799**************************9886 PP

  == domain 2    score: 37.2 bits;  conditional E-value: 8.4e-12
   TIGR00960 112 greieervsaalekvGlkdkakalPv.qlsgGeqqrvaiaravvnkPallladePtgnlddelsrdilelleevnraGttvlvathdenlveskrkrvltlsk 213
                 +++ +e + a +  vG+     + Pv  lsgG + r+a++ra++++P+lll dePt  +d +    + + ++++ ++ +  ++ +hd+ +++   + +++ +k
  MMETSP1137-20121227|6705_1 490 PDKSKEDIAAMMTSVGFASDLMHGPVgALSGGWRMRLALSRAMLKEPELLLLDEPTNHVDVHGVAWLTKYIQDLSNKSISSMIVSHDTAFLDAVAQDCVHYEK 592
                 67888999999******99999999857*******************************************************************99998876 PP

  == domain 3    score: 33.8 bits;  conditional E-value: 9.1e-11
   TIGR00960   1 mikfeqvskaykgaaelaldnvtvkiekGelvflvGhsGaGkstllklilgiekpsaGk 59 
                 +ik+ +vs +y++ ++ +l+n++v+++  + v ++G  GaGkst++kl++g   p++G+
  MMETSP1137-20121227|6705_1 644 LIKMTDVSFRYPTREQNTLNNISVQVSMASRVAVIGVNGAGKSTMIKLMVGELLPNEGE 702
                 699****************************************************9997 PP

  == domain 4    score: 19.0 bits;  conditional E-value: 3.1e-06
   TIGR00960 138 qlsgGeqqrvaiaravvnkPallladePtgnlddelsrdilelleevnraGttvlvathdenl 200
                  lsgG++ +v +a a+  +P++++ dePt  ld++  ++ l     v++    v++ +h++++
  MMETSP1137-20121227|6705_1 880 ALSGGQKVKVVLAAAMWMEPHVIILDEPTNFLDRDS-LGALA--CAVKNFAGGVIIISHQREF 939
                 69*******************************985.44433..2344444456666777665 PP

>> TIGR01189  ccmA: heme ABC exporter, ATP-binding protein CcmA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.0   3.9e-06   0.00025       8      47 ..     413     452 ..     406     465 .. 0.89
   2 !   37.8   0.0   5.2e-12   3.3e-10      95     186 ..     483     576 ..     472     585 .. 0.85
   3 !   18.3   0.0   4.8e-06   0.00031      12      58 ..     658     704 ..     650     739 .. 0.82
   4 !   26.7   0.0   1.3e-08   8.5e-07     106     186 ..     857     936 ..     833     942 .. 0.79

  Alignments for each domain:
  == domain 1    score: 18.6 bits;  conditional E-value: 3.9e-06
   TIGR01189   8 veRgervlleglsfelaaGealvveGpnGiGKttLLRila 47 
                  + g+rvll++  ++l+ G++  + GpnG+GK+tL+R +a
  MMETSP1137-20121227|6705_1 413 LAYGNRVLLHNTRLKLKRGKCYGLIGPNGAGKSTLMRSIA 452
                 667899*******************************987 PP

  == domain 2    score: 37.8 bits;  conditional E-value: 5.2e-12
   TIGR01189  95 kfyaallqseqk.tveealekvgL.sgledlpvaqLsAGqkrRlalarLllskaplWiLDEPttalDkegvellaellaaHlargGivllathq 186
                 +f + +l +++k ++ + +++vg  s+l + pv +Ls G + Rlal+r +l++  l +LDEPt  +D++gv+ l++ +++  ++  + ++ +h 
  MMETSP1137-20121227|6705_1 483 DFVHMDLPDKSKeDIAAMMTSVGFaSDLMHGPVGALSGGWRMRLALSRAMLKEPELLLLDEPTNHVDVHGVAWLTKYIQDLSNKSISSMIVSHD 576
                 56665555554448999999***83589**************************************************9988887777777775 PP

  == domain 3    score: 18.3 bits;  conditional E-value: 4.8e-06
   TIGR01189  12 ervlleglsfelaaGealvveGpnGiGKttLLRilaGLlkpesGeve 58 
                 e++ l+++s++++    ++v G nG+GK+t+++++ G l p++Ge +
  MMETSP1137-20121227|6705_1 658 EQNTLNNISVQVSMASRVAVIGVNGAGKSTMIKLMVGELLPNEGEGS 704
                 567799*******************************9999999854 PP

  == domain 4    score: 26.7 bits;  conditional E-value: 1.3e-08
   TIGR01189 106 ktveealekvgLsgl..edlpvaqLsAGqkrRlalarLllskaplWiLDEPttalDkegvellaellaaHlargGivllathq 186
                 +++++ l++ +L+    +   + +Ls Gqk ++ la  +  +  + iLDEPt  lD+++   la ++++ +  gG++++ +hq
  MMETSP1137-20121227|6705_1 857 LNIQKHLDNFNLEMQfgTYSKIGALSGGQKVKVVLAAAMWMEPHVIILDEPTNFLDRDSLGALACAVKNFA--GGVIII-SHQ 936
                 377888888888765224557889*****************************************999874..565555.554 PP

>> TIGR02204  MsbA_rel: ABC transporter, permease/ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.6   0.0   0.00013    0.0082     353     384 ..     418     449 ..     406     454 .. 0.86
   2 !   29.5   0.0     1e-09   6.7e-08     464     536 ..     504     578 ..     487     594 .. 0.83
   3 !   38.4   0.0     2e-12   1.3e-10     324     406 ..     631     708 ..     601     728 .. 0.83
   4 !   20.3   0.0   6.2e-07     4e-05     456     533 ..     864     935 ..     835     939 .. 0.78

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 0.00013
   TIGR02204 353 qkaldgldltvrpGetvalvGPsGaGkstlle 384
                 +  l++  l+++ G+   l+GP GaGkstl++
  MMETSP1137-20121227|6705_1 418 RVLLHNTRLKLKRGKCYGLIGPNGAGKSTLMR 449
                 45789999**********************97 PP

  == domain 2    score: 29.5 bits;  conditional E-value: 1e-09
   TIGR02204 464 eGydtllGergv.tLsGGqkqriaiarailkdapiLLLdeatsaLdaeseqlvqqaleelmkgr.ttlviahrLa 536
                  G+++ l    v  LsGG + r+a++ra+lk+  +LLLde t+ +d +    + + ++ l+++    ++++h  a
  MMETSP1137-20121227|6705_1 504 VGFASDLMHGPVgALSGGWRMRLALSRAMLKEPELLLLDEPTNHVDVHGVAWLTKYIQDLSNKSiSSMIVSHDTA 578
                 47777776666536**********************************999999999999876525688888655 PP

  == domain 3    score: 38.4 bits;  conditional E-value: 2e-12
   TIGR02204 324 PaqpkalpakvrgeiefeevkfayParpdqkaldgldltvrpGetvalvGPsGaGkstllelllrfydPqsGailldGvdlre 406
                 P   + ++ k+++ i++ +v+f+yP+r  q++l++++++v    +va++G  GaGkst+++l+     P++G+    G ++ +
  MMETSP1137-20121227|6705_1 631 PGMLEGVTSKTKALIKMTDVSFRYPTRE-QNTLNNISVQVSMASRVAVIGVNGAGKSTMIKLMVGELLPNEGE----GSPVIQ 708
                 5555667889999**************7.999*******************************9999999884....555555 PP

  == domain 4    score: 20.3 bits;  conditional E-value: 6.2e-07
   TIGR02204 456 defisklpeGydtllGergvtLsGGqkqriaiarailkdapiLLLdeatsaLdaeseqlvqqaleelmkgrttlviah 533
                 d+f  +++ G  +++G     LsGGqk ++ +a a+  +  +++Lde t+ Ld +s  ++  a+++   g   ++i+h
  MMETSP1137-20121227|6705_1 864 DNFNLEMQFGTYSKIG----ALSGGQKVKVVLAAAMWMEPHVIILDEPTNFLDRDSLGALACAVKNFAGG--VIIISH 935
                 5555555555555555....69**********************************99999999887654..456666 PP

>> TIGR00968  3a0106s01: sulfate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.8   0.0   1.8e-07   1.2e-05       8      48 ..     413     453 ..     409     489 .. 0.80
   2 !   34.9   0.0   3.8e-11   2.4e-09     129     208 ..     516     594 ..     486     604 .. 0.84
   3 !   15.9   0.0   2.3e-05    0.0015       2      56 ..     646     702 ..     645     775 .. 0.80
   4 !   26.7   0.0   1.2e-08   7.7e-07      95     163 ..     847     913 ..     833     934 .. 0.81

  Alignments for each domain:
  == domain 1    score: 22.8 bits;  conditional E-value: 1.8e-07
   TIGR00968   8 krfGdfqalddvdlevktGslvallGpsGsGkstllrviaG 48 
                   +G+ + l++  l++k G+  +l+Gp G+Gkstl+r ia 
  MMETSP1137-20121227|6705_1 413 LAYGNRVLLHNTRLKLKRGKCYGLIGPNGAGKSTLMRSIAA 453
                 579**********************************9985 PP

  == domain 2    score: 34.9 bits;  conditional E-value: 3.8e-11
   TIGR00968 129 sqlsGGqrqrvalaralavepqvllldepfgaldakvrkelrawlrklhdevkvttvfvthdqeealevadrivvlekGk 208
                   lsGG r r+al+ra+  ep++llldep   +d +    l ++++ l ++ ++++++v+hd +    va++ v  ek +
  MMETSP1137-20121227|6705_1 516 GALSGGWRMRLALSRAMLKEPELLLLDEPTNHVDVHGVAWLTKYIQDLSNK-SISSMIVSHDTAFLDAVAQDCVHYEKNR 594
                 579*********************************999999999999877.899*********9999999998877665 PP

  == domain 3    score: 15.9 bits;  conditional E-value: 2.3e-05
   TIGR00968   2 lianvskrfG..dfqalddvdlevktGslvallGpsGsGkstllrviaGlekpdsGr 56 
                 ++++vs r+   + ++l++++++v   s va++G  G+Gkst+++++ G   p++G+
  MMETSP1137-20121227|6705_1 646 KMTDVSFRYPtrEQNTLNNISVQVSMASRVAVIGVNGAGKSTMIKLMVGELLPNEGE 702
                 5667777775224578*******************************9977777763 PP

  == domain 4    score: 26.7 bits;  conditional E-value: 1.2e-08
   TIGR00968  95 fGleirkkdkakikakveellelvqleklgdrypsqlsGGqrqrvalaralavepqvllldepfgalda 163
                  G+  +k ++ +i+++++++   +q+  +++     lsGGq+ +v la a+ +ep+v++ldep   ld 
  MMETSP1137-20121227|6705_1 847 SGIATKKLTALNIQKHLDNFNLEMQFGTYSK--IGALSGGQKVKVVLAAAMWMEPHVIILDEPTNFLDR 913
                 3777788888888888888766677766554..468***************************999985 PP

>> TIGR03771  anch_rpt_ABC: anchored repeat-type ABC transporter, ATP-binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1   0.0   6.7e-07   4.3e-05       1      28 [.     426     453 ..     426     487 .. 0.84
   2 !   42.8   0.0   1.6e-13     1e-11     104     176 ..     508     580 ..     491     593 .. 0.86
   3 !    9.2   0.0    0.0031       0.2       4      56 ..     670     720 ..     667     726 .. 0.70
   4 !   26.9   0.0   1.2e-08   7.7e-07     108     161 ..     875     928 ..     855     960 .. 0.83

  Alignments for each domain:
  == domain 1    score: 21.1 bits;  conditional E-value: 6.7e-07
   TIGR03771   1 lsvdkGellgllGpnGaGkttllrailg 28 
                 l++++G+  gl+GpnGaGk+tl+r+i +
  MMETSP1137-20121227|6705_1 426 LKLKRGKCYGLIGPNGAGKSTLMRSIAA 453
                 57899********************976 PP

  == domain 2    score: 42.8 bits;  conditional E-value: 1.6e-13
   TIGR03771 104 teladrpvGelsGGqrqrvlvaralavkpslllldepftGldlpsqellvelfeelagegtailmtthdlaea 176
                 ++l + pvG lsGG r r+ ++ra+  +p+lllldep   +d+     l++ +++l+++  + ++++hd a  
  MMETSP1137-20121227|6705_1 508 SDLMHGPVGALSGGWRMRLALSRAMLKEPELLLLDEPTNHVDVHGVAWLTKYIQDLSNKSISSMIVSHDTAFL 580
                 479999***************************************************************8754 PP

  == domain 3    score: 9.2 bits;  conditional E-value: 0.0031
   TIGR03771   4 dkGellgllGpnGaGkttllrailglikvakGsvkvagkssrkgrreiGyvpq 56 
                 +    ++++G nGaGk+t+++ ++g + +++G+       +r+  +++ yv q
  MMETSP1137-20121227|6705_1 670 SMASRVAVIGVNGAGKSTMIKLMVGELLPNEGEGSPVI--QRHPNMRLAYVAQ 720
                 5666799*****************97777777543222..2444555666665 PP

  == domain 4    score: 26.9 bits;  conditional E-value: 1.2e-08
   TIGR03771 108 drpvGelsGGqrqrvlvaralavkpslllldepftGldlpsqellvelfeelag 161
                    +G lsGGq+ +v++a a+ ++p++++ldep   ld  s   l+  ++++ag
  MMETSP1137-20121227|6705_1 875 YSKIGALSGGQKVKVVLAAAMWMEPHVIILDEPTNFLDRDSLGALACAVKNFAG 928
                 5679**********************************9998888777777665 PP

>> TIGR02769  nickel_nikE: nickel import ATP-binding protein NikE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.0   1.8e-06   0.00012      22      57 ..     416     451 ..     407     456 .. 0.88
   2 !   35.9   0.0   1.9e-11   1.2e-09     126     228 ..     493     594 ..     482     605 .. 0.91
   3 !   24.7   0.0   4.7e-08     3e-06      21      67 ..     656     702 ..     643     724 .. 0.85
   4 !   18.7   0.0   3.2e-06   0.00021     150     228 ..     880     954 ..     852     981 .. 0.76

  Alignments for each domain:
  == domain 1    score: 19.5 bits;  conditional E-value: 1.8e-06
   TIGR02769  22 qrkavldnvslsleeGetvallGrsGaGkstlarll 57 
                 + + +l+n  l+l++G++ +l+G  GaGkstl r +
  MMETSP1137-20121227|6705_1 416 GNRVLLHNTRLKLKRGKCYGLIGPNGAGKSTLMRSI 451
                 667789**************************9965 PP

  == domain 2    score: 35.9 bits;  conditional E-value: 1.9e-11
   TIGR02769 126 rkariaellelvelrsevldklPrqlsGGqlqriniaralavePklivldeavsnldlvlqasilellkklkqefGlaylfithdlrlvqkfaqrvlvldeGq 228
                  k+ ia+++  v++ s+ ++     lsGG   r++++ra+  eP+l++lde    +d++  a + + +++l +++ ++ ++++hd    + +aq ++  ++ +
  MMETSP1137-20121227|6705_1 493 SKEDIAAMMTSVGFASDLMHGPVGALSGGWRMRLALSRAMLKEPELLLLDEPTNHVDVHGVAWLTKYIQDLSNKS-ISSMIVSHDTAFLDAVAQDCVHYEKNR 594
                 57789***************9999***********************************************9875.89999**************99887765 PP

  == domain 3    score: 24.7 bits;  conditional E-value: 4.7e-08
   TIGR02769  21 kqrkavldnvslsleeGetvallGrsGaGkstlarlllGlekPakGe 67 
                    ++ l+n+s+++     va++G  GaGkst+ +l++G   P++Ge
  MMETSP1137-20121227|6705_1 656 TREQNTLNNISVQVSMASRVAVIGVNGAGKSTMIKLMVGELLPNEGE 702
                 456889*********************************99999997 PP

  == domain 4    score: 18.7 bits;  conditional E-value: 3.2e-06
   TIGR02769 150 qlsGGqlqriniaralavePklivldeavsnldlvlqasilellkklkqefGlaylfithdlrlvqkfaqrvlvldeGq 228
                  lsGGq  ++ +a a+ +eP++i+lde    ld+      l  l    ++f   +++i+h  +    ++ +v  + +G+
  MMETSP1137-20121227|6705_1 880 ALSGGQKVKVVLAAAMWMEPHVIILDEPTNFLDRDS----LGALACAVKNFAGGVIIISHQREFYSALCPEVWSVVDGR 954
                 69****************************999854....333333344555567888888888888888887666665 PP

>> TIGR03411  urea_trans_UrtD: urea ABC transporter, ATP-binding protein UrtD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.0   5.3e-06   0.00034      17      49 ..     420     452 ..     406     458 .. 0.86
   2 !   33.6   0.0     1e-10   6.7e-09     103     212 ..     476     587 ..     462     607 .. 0.86
   3 !   23.4   0.0   1.3e-07   8.5e-06      16      58 ..     660     702 ..     643     727 .. 0.84
   4 !   22.3   0.0   2.9e-07   1.9e-05     108     225 ..     843     960 ..     825     969 .. 0.83

  Alignments for each domain:
  == domain 1    score: 18.2 bits;  conditional E-value: 5.3e-06
   TIGR03411  17 alndlslsveegelrviiGpnGaGkttllDvit 49 
                  l++  l++++g++  +iGpnGaGk+tl+  i+
  MMETSP1137-20121227|6705_1 420 LLHNTRLKLKRGKCYGLIGPNGAGKSTLMRSIA 452
                 578899***********************8775 PP

  == domain 2    score: 33.6 bits;  conditional E-value: 1e-10
   TIGR03411 103 kadksvlallfarlskeekerieevleligLe.ekadkkaglLshGqkqwLeigmllvqepkllllDePvaGmtdeetektaellkelake.rsvvvvehDmefvrelaekv 212
                 +a+ ++++ + + l +++ke i+++++ +g + + ++   g+Ls G + +L ++  +++ep+llllDeP+  +  +  +  ++ +++l+++  s ++v hD  f++++a+  
  MMETSP1137-20121227|6705_1 476 HAEMGCIDFVHMDLPDKSKEDIAAMMTSVGFAsDLMHGPVGALSGGWRMRLALSRAMLKEPELLLLDEPTNHVDVHGVAWLTKYIQDLSNKsISSMIVSHDTAFLDAVAQDC 587
                 455666777788888999***********9972557889*************************************************8652689***********999865 PP

  == domain 3    score: 23.4 bits;  conditional E-value: 1.3e-07
   TIGR03411  16 kalndlslsveegelrviiGpnGaGkttllDvitGktrpdeGs 58 
                 + ln++s++v+  +  ++iG nGaGk+t++ +++G   p+eG+
  MMETSP1137-20121227|6705_1 660 NTLNNISVQVSMASRVAVIGVNGAGKSTMIKLMVGELLPNEGE 702
                 689************************************9996 PP

  == domain 4    score: 22.3 bits;  conditional E-value: 2.9e-07
   TIGR03411 108 vlallfarlskeekerieevleligLeeka..dkkaglLshGqkqwLeigmllvqepkllllDePvaGmtdeetektaellkelakersvvvvehDmefvrelaekvtvlheGkvlaeGs 225
                  +++    ++k ++ +i++ l+  +Le +    +k g+Ls Gqk  + ++  +  ep++++lDeP+  + ++     a  +k+ a+   v+++ h  ef  +l  +v  + +G+  + Gs
  MMETSP1137-20121227|6705_1 843 AFEASGIATKKLTALNIQKHLDNFNLEMQFgtYSKIGALSGGQKVKVVLAAAMWMEPHVIILDEPTNFLDRDSLGALACAVKNFAG--GVIIISHQREFYSALCPEVWSVVDGRCTVTGS 960
                 4555555666777788999999999988861156789******************************9999888888888888876..69**************9999999998877775 PP

>> TIGR01288  nodI: nodulation ABC transporter NodI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.3   0.0   1.4e-09   8.9e-08      11      50 ..     412     451 ..     405     474 .. 0.92
   2 !   27.4   0.0   5.2e-09   3.3e-07     131     189 ..     513     571 ..     493     603 .. 0.81
   3 !   16.7   0.0   9.5e-06   0.00061       5      69 ..     645     711 ..     641     731 .. 0.79
   4 !   20.7   0.0   5.9e-07   3.8e-05     130     170 ..     875     915 ..     846     962 .. 0.72

  Alignments for each domain:
  == domain 1    score: 29.3 bits;  conditional E-value: 1.4e-09
   TIGR01288  11 sksygdkvvvndlsftiaagecfgllgpngagkstiarlv 50 
                 s +yg++v++++  + + +g+c+gl+gpngagkst+ r +
  MMETSP1137-20121227|6705_1 412 SLAYGNRVLLHNTRLKLKRGKCYGLIGPNGAGKSTLMRSI 451
                 678*********************************9976 PP

  == domain 2    score: 27.4 bits;  conditional E-value: 5.2e-09
   TIGR01288 131 vrvadlsggmkrrltlaralindpqllildepttgldpharhliwerlrsllargktil 189
                  +v  lsgg + rl+l+ra++++p+ll+ldept  +d h    + + ++ l  +  + +
  MMETSP1137-20121227|6705_1 513 GPVGALSGGWRMRLALSRAMLKEPELLLLDEPTNHVDVHGVAWLTKYIQDLSNKSISSM 571
                 57999**********************************88777766666666555555 PP

  == domain 3    score: 16.7 bits;  conditional E-value: 9.5e-06
   TIGR01288   5 idlvgvsksyg..dkvvvndlsftiaagecfgllgpngagkstiarlvlglispdegkitvlgepvp 69 
                 i++++vs  y   ++  +n++s  ++      ++g ngagkst+ +l++g   p+eg+ + + ++ p
  MMETSP1137-20121227|6705_1 645 IKMTDVSFRYPtrEQNTLNNISVQVSMASRVAVIGVNGAGKSTMIKLMVGELLPNEGEGSPVIQRHP 711
                 5666777666512456899*************************************98765555555 PP

  == domain 4    score: 20.7 bits;  conditional E-value: 5.9e-07
   TIGR01288 130 dvrvadlsggmkrrltlaralindpqllildepttgldpha 170
                   ++  lsgg k ++ la+a+  +p+++ildept  ld  +
  MMETSP1137-20121227|6705_1 875 YSKIGALSGGQKVKVVLAAAMWMEPHVIILDEPTNFLDRDS 915
                 458999******************************99765 PP

>> TIGR03797  NHLM_micro_ABC2: NHLM bacteriocin system ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.1      0.65        42     154     222 ..     187     259 ..     127     262 .. 0.86
   2 !   13.6   0.0   5.8e-05    0.0037     459     497 ..     411     449 ..     403     454 .. 0.88
   3 !   21.0   0.0   3.2e-07   2.1e-05     585     634 ..     514     563 ..     493     579 .. 0.75
   4 !   35.5   0.0   1.4e-11   8.7e-10     451     508 ..     644     701 ..     601     704 .. 0.82
   5 !   21.8   0.0   1.9e-07   1.2e-05     587     643 ..     879     935 ..     860     959 .. 0.91

  Alignments for each domain:
  == domain 1    score: 0.2 bits;  conditional E-value: 0.65
   TIGR03797 154 vvPlatgilldeviPdaersl.llqvalallaaalgallfqlaqslav..lRletavdaslqaav.wdrLLrl 222
                 v+Pl+ +++  ++ Pd+e ++ l +++++  ++a+ + +++++  + +  lR++++v+++ +aav +d +++l
  MMETSP1137-20121227|6705_1 187 VIPLIDDVISANLNPDTEGETcLDKLVATTYVSAVDEPTLSIIIPVLLrgLRVRGNVNMQRKAAVvVDTMFKL 259
                 89**************99766266788999999**9999998876544349*********9999636999887 PP

  == domain 2    score: 13.6 bits;  conditional E-value: 5.8e-05
   TIGR03797 459 FrYekdgplvLddvslkiepGefvaivGaSGsGKStllr 497
                 F  +   ++ L++  lk + G+  +++G+ G+GKStl+r
  MMETSP1137-20121227|6705_1 411 FSLAYGNRVLLHNTRLKLKRGKCYGLIGPNGAGKSTLMR 449
                 55566778899***************************9 PP

  == domain 3    score: 21.0 bits;  conditional E-value: 3.2e-07
   TIGR03797 585 gggtlSGGQrQRlliAralvrkPrillfDEATSALDNrtQaiVseslekl 634
                   g+lSGG r Rl + ra+ + P++ll+DE T  +D +  a  ++ ++ l
  MMETSP1137-20121227|6705_1 514 PVGALSGGWRMRLALSRAMLKEPELLLLDEPTNHVDVHGVAWLTKYIQDL 563
                 4689*****************************99988888777665555 PP

  == domain 4    score: 35.5 bits;  conditional E-value: 1.4e-11
   TIGR03797 451 aievdrvtFrYekdgplvLddvslkiepGefvaivGaSGsGKStllrlLLgFekPesG 508
                  i++  v+FrY +  + +L+++s++++    va++G  G+GKSt+++l++g   P++G
  MMETSP1137-20121227|6705_1 644 LIKMTDVSFRYPTREQNTLNNISVQVSMASRVAVIGVNGAGKSTMIKLMVGELLPNEG 701
                 499************************************************8888877 PP

  == domain 5    score: 21.8 bits;  conditional E-value: 1.9e-07
   TIGR03797 587 gtlSGGQrQRlliAralvrkPrillfDEATSALDNrtQaiVsesleklkvtRiviAH 643
                 g+lSGGQ+ ++++A a+   P+++++DE T  LD  +  +   ++++++   i+i H
  MMETSP1137-20121227|6705_1 879 GALSGGQKVKVVLAAAMWMEPHVIILDEPTNFLDRDSLGALACAVKNFAGGVIIISH 935
                 68********************************99999999999999999999998 PP

>> TIGR00958  3a01208: antigen peptide transporter 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   0.0   7.3e-05    0.0047     494     524 ..     418     448 ..     408     454 .. 0.86
   2 !   23.7   0.0   4.3e-08   2.8e-06     617     671 ..     517     574 ..     502     619 .. 0.76
   3 !   30.4   0.0     4e-10   2.6e-08     473     536 ..     639     701 ..     627     708 .. 0.86
   4 !   25.6   0.0   1.2e-08   7.6e-07     585     673 ..     852     936 ..     834     953 .. 0.87

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 7.3e-05
   TIGR00958 494 kpvlkdLtftlepGevvalVGPsGsGKStva 524
                 + +l++  ++l+ G+   l+GP+G GKSt +
  MMETSP1137-20121227|6705_1 418 RVLLHNTRLKLKRGKCYGLIGPNGAGKSTLM 448
                 46789999*********************86 PP

  == domain 2    score: 23.7 bits;  conditional E-value: 4.3e-08
   TIGR00958 617 qlsgGqkqriAiARALvrkPrvLiLDeAtSALDa....eveqllqesksaksrtvllia 671
                  lsgG + r+A+ RA++++P +L+LDe t  +D+       + +q + s+ks + +++ 
  MMETSP1137-20121227|6705_1 517 ALSGGWRMRLALSRAMLKEPELLLLDEPTNHVDVhgvaWLTKYIQ-DLSNKSISSMIVS 574
                 489*******************************54432233333.3334444444444 PP

  == domain 3    score: 30.4 bits;  conditional E-value: 4e-10
   TIGR00958 473 knleGkveFqdVsFsYPsrpdkpvlkdLtftlepGevvalVGPsGsGKStvaallenlYqPtgG 536
                 ++ +  ++  dVsF YP+r + + l++++ +++  + va++G +G GKSt++ l+     P++G
  MMETSP1137-20121227|6705_1 639 SKTKALIKMTDVSFRYPTREQ-NTLNNISVQVSMASRVAVIGVNGAGKSTMIKLMVGELLPNEG 701
                 566789*************76.579****************************99877777777 PP

  == domain 4    score: 25.6 bits;  conditional E-value: 1.2e-08
   TIGR00958 585 eevtaaakaanahdFiselekgydtevgekGsqlsgGqkqriAiARALvrkPrvLiLDeAtSALDaeveqllqesksaksrtvlliahr 673
                 +++ta   + + ++F  e++ g + ++g     lsgGqk ++ +A A+  +P v+iLDe t  LD ++  +l    ++    v++i h+
  MMETSP1137-20121227|6705_1 852 KKLTALNIQKHLDNFNLEMQFGTYSKIG----ALSGGQKVKVVLAAAMWMEPHVIILDEPTNFLDRDSLGALACAVKNFAGGVIIISHQ 936
                 5667777788889999999999999998....59********************************99999998877778889999987 PP

>> TIGR02982  heterocyst_DevA: ABC exporter ATP-binding subunit, DevA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.1       2.6   1.7e+02     173     193 ..      23      43 ..      15      55 .. 0.83
   2 ?    7.3   0.0     0.011      0.69      18      52 ..     418     452 ..     409     457 .. 0.88
   3 !   45.3   0.0   2.6e-14   1.7e-12     117     216 ..     492     592 ..     479     596 .. 0.88
   4 !    9.7   0.0     0.002      0.13      11      56 ..     652     697 ..     644     720 .. 0.81
   5 !   28.1   0.0   4.7e-09     3e-07     121     185 ..     858     924 ..     832     941 .. 0.77

  Alignments for each domain:
  == domain 1    score: -0.5 bits;  conditional E-value: 2.6
   TIGR02982 173 dkksgrevvellqklareqgt 193
                 dk+s+++vv+ +++ a +++t
  MMETSP1137-20121227|6705_1  23 DKTSAKAVVTTIKQAAGDKAT 43 
                 999*************99876 PP

  == domain 2    score: 7.3 bits;  conditional E-value: 0.011
   TIGR02982  18 kqvlfdinleiepgeiviltGpsGsGkttlltlig 52 
                 + +l++  l+++ g    l Gp G+Gk tl+  i+
  MMETSP1137-20121227|6705_1 418 RVLLHNTRLKLKRGKCYGLIGPNGAGKSTLMRSIA 452
                 5678999***********************98776 PP

  == domain 3    score: 45.3 bits;  conditional E-value: 2.6e-14
   TIGR02982 117 eakakaeelleavgleerldykp.edlsgGqkqrvaiaralvarPklvladePtaaldkksgrevvellqklareqgttillvthdnrild.vadrivkmed 216
                 ++k++ ++++++vg+ + l + p   lsgG + r+a++ra+ ++P+l+l dePt  +d +    + + +q+l+ +++ ++++v hd+  ld va+  v+ e+
  MMETSP1137-20121227|6705_1 492 KSKEDIAAMMTSVGFASDLMHGPvGALSGGWRMRLALSRAMLKEPELLLLDEPTNHVDVHGVAWLTKYIQDLS-NKSISSMIVSHDTAFLDaVAQDCVHYEK 592
                 56778899*******99888777358**********************************9999999999997.578999********99867888888886 PP

  == domain 4    score: 9.7 bits;  conditional E-value: 0.002
   TIGR02982  11 ygkgelrkqvlfdinleiepgeiviltGpsGsGkttlltligglrs 56 
                 +   + +++ l++i+++++    v + G  G+Gk t++ l+ g   
  MMETSP1137-20121227|6705_1 652 FRYPTREQNTLNNISVQVSMASRVAVIGVNGAGKSTMIKLMVGELL 697
                 4445567789******************************977544 PP

  == domain 5    score: 28.1 bits;  conditional E-value: 4.7e-09
   TIGR02982 121 kaeelleavgleerldykpe..dlsgGqkqrvaiaralvarPklvladePtaaldkksgrevvellq 185
                 + ++ l +  le ++  +++   lsgGqk +v +a a+  +P++++ dePt  ld++s  ++   ++
  MMETSP1137-20121227|6705_1 858 NIQKHLDNFNLEMQFGTYSKigALSGGQKVKVVLAAAMWMEPHVIILDEPTNFLDRDSLGALACAVK 924
                 45667777777778877664338********************************999766655555 PP

>> TIGR03796  NHLM_micro_ABC1: NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   1.3e-05   0.00081     480     526 ..     406     452 ..     352     465 .. 0.87
   2 !   25.5   0.0   1.2e-08   7.5e-07     601     670 ..     502     575 ..     491     587 .. 0.81
   3 !   32.8   0.0   7.2e-11   4.6e-09     472     535 ..     639     702 ..     593     719 .. 0.88
   4 !   17.2   0.0   3.8e-06   0.00024     615     671 ..     880     936 ..     858     940 .. 0.90

  Alignments for each domain:
  == domain 1    score: 15.5 bits;  conditional E-value: 1.3e-05
   TIGR03796 480 lrnvtfgysaleapliedfslslkpGqrvAlvGgsGsGkstiaklva 526
                 l + +f+ +  ++ l+++ +l+lk G+   l+G+ G+Gkst+ + +a
  MMETSP1137-20121227|6705_1 406 LCDCEFSLAYGNRVLLHNTRLKLKRGKCYGLIGPNGAGKSTLMRSIA 452
                 56789999999*******************************99776 PP

  == domain 2    score: 25.5 bits;  conditional E-value: 1.2e-08
   TIGR03796 601 rpggyeaelaegg.anlsGGqrqRleiARaLvknPsiLilDEatsaLDaetEkaid...enlrrRgctciivaH 670
                 ++ g++++l+ g    lsGG r Rl + Ra+ k+P +L+lDE t  +D +    ++   ++l ++ ++ +iv+H
  MMETSP1137-20121227|6705_1 502 TSVGFASDLMHGPvGALSGGWRMRLALSRAMLKEPELLLLDEPTNHVDVHGVAWLTkyiQDLSNKSISSMIVSH 575
                 45678888888752579*******************************988766541116678999******99 PP

  == domain 3    score: 32.8 bits;  conditional E-value: 7.2e-11
   TIGR03796 472 ekLsGkvelrnvtfgysaleapliedfslslkpGqrvAlvGgsGsGkstiaklvaGlyepwsGe 535
                 +k +  +++++v+f y + e++ ++++s++++  +rvA++G  G+Gkst+ kl+ G   p +Ge
  MMETSP1137-20121227|6705_1 639 SKTKALIKMTDVSFRYPTREQNTLNNISVQVSMASRVAVIGVNGAGKSTMIKLMVGELLPNEGE 702
                 6777889*************************************************99998886 PP

  == domain 4    score: 17.2 bits;  conditional E-value: 3.8e-06
   TIGR03796 615 nlsGGqrqRleiARaLvknPsiLilDEatsaLDaetEkaidenlrrRgctciivaHR 671
                  lsGGq+ ++ +A a+  +P ++ilDE t  LD     a+  ++++    +ii++H 
  MMETSP1137-20121227|6705_1 880 ALSGGQKVKVVLAAAMWMEPHVIILDEPTNFLDRDSLGALACAVKNFAGGVIIISHQ 936
                 59*******************************************999999999995 PP

>> TIGR02203  MsbA_lipidA: lipid A export permease/ATP-binding protein MsbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.3   0.0    0.0012     0.074     338     378 ..     410     450 ..     291     456 .. 0.70
   2 !   24.3   0.0   3.3e-08   2.1e-06     469     517 ..     516     564 ..     500     585 .. 0.80
   3 !   33.9   0.0   4.3e-11   2.7e-09     327     388 ..     640     701 ..     630     710 .. 0.90
   4 !   21.8   0.0   1.9e-07   1.2e-05     444     512 ..     854     922 ..     842     936 .. 0.86

  Alignments for each domain:
  == domain 1    score: 9.3 bits;  conditional E-value: 0.0012
   TIGR02203 338 tfrypgddrealdsislkveaGevvalvGrsGsGkstlvnl 378
                 +f     +r  l++  lk++ G+   l+G+ G+Gkstl++ 
  MMETSP1137-20121227|6705_1 410 EFSLAYGNRVLLHNTRLKLKRGKCYGLIGPNGAGKSTLMRS 450
                 4555556778899*************************875 PP

  == domain 2    score: 24.3 bits;  conditional E-value: 3.3e-08
   TIGR02203 469 skLsGGqRqRlaiaRallkdaPiLiLDeatsaLDneseRlvqaaLerlm 517
                 + LsGG R Rla++Ra+lk+  +L+LDe t  +D      + + ++ l 
  MMETSP1137-20121227|6705_1 516 GALSGGWRMRLALSRAMLKEPELLLLDEPTNHVDVHGVAWLTKYIQDLS 564
                 469****************************999876666666666655 PP

  == domain 3    score: 33.9 bits;  conditional E-value: 4.3e-11
   TIGR02203 327 rvrGkvefrnvtfrypgddrealdsislkveaGevvalvGrsGsGkstlvnllpRFyepdsG 388
                 + +  +++ +v+fryp +++++l++is++v+   +va++G  G+Gkst+++l+   + p++G
  MMETSP1137-20121227|6705_1 640 KTKALIKMTDVSFRYPTREQNTLNNISVQVSMASRVAVIGVNGAGKSTMIKLMVGELLPNEG 701
                 6677899*********************************************9877777766 PP

  == domain 4    score: 21.8 bits;  conditional E-value: 1.9e-07
   TIGR02203 444 laaaylkdlvdklpeGldtevGengskLsGGqRqRlaiaRallkdaPiLiLDeatsaLDneseRlvqaa 512
                 l+a ++++ +d+ +  +++   ++ + LsGGq+ ++ +a a+  +  ++iLDe t  LD +s  ++  a
  MMETSP1137-20121227|6705_1 854 LTALNIQKHLDNFNLEMQFGTYSKIGALSGGQKVKVVLAAAMWMEPHVIILDEPTNFLDRDSLGALACA 922
                 6677999999999999999999999***********************************997666555 PP

>> TIGR01846  type_I_sec_HlyB: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.0   4.3e-05    0.0028     468     502 ..     416     450 ..     403     456 .. 0.86
   2 !   25.4   0.0   1.3e-08   8.6e-07     592     642 ..     516     566 ..     498     591 .. 0.83
   3 !   25.4   0.0   1.4e-08   8.8e-07     451     512 ..     640     701 ..     633     706 .. 0.92
   4 !   24.4   0.0   2.7e-08   1.7e-06     590     651 ..     877     936 ..     859     961 .. 0.88

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 4.3e-05
   TIGR01846 468 dspevlsnlsldikaGeviGivGpsGsGkstltkl 502
                  + ++l+n  l++k G+  G++Gp G+Gkstl + 
  MMETSP1137-20121227|6705_1 416 GNRVLLHNTRLKLKRGKCYGLIGPNGAGKSTLMRS 450
                 566789**************************885 PP

  == domain 2    score: 25.4 bits;  conditional E-value: 1.3e-08
   TIGR01846 592 aalsGGqrqrialaralvanPrilildeatsaldyeseavimrnlreickg 642
                 +alsGG r r+al+ra++++P +l+lde t  +d +  a + + ++++++ 
  MMETSP1137-20121227|6705_1 516 GALSGGWRMRLALSRAMLKEPELLLLDEPTNHVDVHGVAWLTKYIQDLSNK 566
                 78*********************************9999998888888754 PP

  == domain 3    score: 25.4 bits;  conditional E-value: 1.4e-08
   TIGR01846 451 elkGaiefenirfrykedspevlsnlsldikaGeviGivGpsGsGkstltkllqrlyvPekG 512
                 + k  i++ ++ fry   + + l+n+s+++     + ++G  G+Gkst+ kl+    +P++G
  MMETSP1137-20121227|6705_1 640 KTKALIKMTDVSFRYPTREQNTLNNISVQVSMASRVAVIGVNGAGKSTMIKLMVGELLPNEG 701
                 5677899**********************************************888888877 PP

  == domain 4    score: 24.4 bits;  conditional E-value: 2.7e-08
   TIGR01846 590 kGaalsGGqrqrialaralvanPrilildeatsaldyeseavimrnlreickgrtviiiahr 651
                 k +alsGGq+ ++ la a+  +P+++ilde t  ld +s  ++   +++ + g  viii+h+
  MMETSP1137-20121227|6705_1 877 KIGALSGGQKVKVVLAAAMWMEPHVIILDEPTNFLDRDSLGALACAVKNFAGG--VIIISHQ 936
                 5589*************************************999999999876..8888886 PP

>> TIGR01193  bacteriocin_ABC: ABC-type bacteriocin transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   0.0   7.2e-05    0.0046     459     519 ..     388     450 ..     371     463 .. 0.81
   2 !   20.4   0.0   5.3e-07   3.4e-05     591     662 ..     494     568 ..     487     585 .. 0.80
   3 !   32.9   0.0   8.7e-11   5.6e-09     468     530 ..     639     702 ..     632     739 .. 0.73
   4 !   21.8   0.0   1.9e-07   1.2e-05     561     643 ..     827     912 ..     810     935 .. 0.87

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 7.2e-05
   TIGR01193 459 kekkkltelenlngdiev.ndvsysyGygsev.ledislkikknekitlvGlsGsGkstlakl 519
                     k +e  + + d+ev  d ++s  yg++v l++  lk+k+ +   l+G  G+Gkstl++ 
  MMETSP1137-20121227|6705_1 388 FGAGKEEEVVEDHDDLEVlCDCEFSLAYGNRVlLHNTRLKLKRGKCYGLIGPNGAGKSTLMRS 450
                 4444557777888888753699******9987369*************************875 PP

  == domain 2    score: 20.4 bits;  conditional E-value: 5.3e-07
   TIGR01193 591 kddiekl..plGyqtelsee.assisgGqkqrlalarallsdskvlildestsnldlltekkivenllklkdkti 662
                 k+di  +  ++G+ ++l +    ++sgG + rlal+ra+l + ++l+lde t ++d+     + + +  l++k+i
  MMETSP1137-20121227|6705_1 494 KEDIAAMmtSVGFASDLMHGpVGALSGGWRMRLALSRAMLKEPELLLLDEPTNHVDVHGVAWLTKYIQDLSNKSI 568
                 567777633579999998642579********************************9776666666666666665 PP

  == domain 3    score: 32.9 bits;  conditional E-value: 8.7e-11
   TIGR01193 468 enlngdievndvsysyGy.gsevledislkikknekitlvGlsGsGkstlakllvkffqaesGe 530
                 +++++ i++ dvs++y    ++ l++is+++++ ++++++G+ G+Gkst++kl+v+   +++Ge
  MMETSP1137-20121227|6705_1 639 SKTKALIKMTDVSFRYPTrEQNTLNNISVQVSMASRVAVIGVNGAGKSTMIKLMVGELLPNEGE 702
                 5667789*********8725799********************************988655554 PP

  == domain 4    score: 21.8 bits;  conditional E-value: 1.9e-07
   TIGR01193 561 sGsilenlllgakenvsqee..i.kkaveiaeikddieklplGyqtelseeassisgGqkqrlalarallsdskvlildestsnld 643
                  G  le l+++  e+   e   i +k +   +i++ +++++l +q    ++  ++sgGqk ++ la a+  + +v+ilde t  ld
  MMETSP1137-20121227|6705_1 827 XGPALEKLMMQVDERXAFEAsgIaTKKLTALNIQKHLDNFNLEMQFGTYSKIGALSGGQKVKVVLAAAMWMEPHVIILDEPTNFLD 912
                 57889999999877765554224256678889***********99999999*******************************9998 PP

>> TIGR02633  xylG: D-xylose ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.0   6.1e-07   3.9e-05      11      49 ..     415     453 ..     410     490 .. 0.87
   2 !   30.9   0.0   3.3e-10   2.1e-08     397     466 ..     511     580 ..     484     599 .. 0.84
   3 !   14.3   0.0   3.5e-05    0.0022      14      49 ..     659     694 ..     644     707 .. 0.85
   4 !   22.6   0.0   1.1e-07   6.8e-06     397     435 ..     874     912 ..     844     960 .. 0.81

  Alignments for each domain:
  == domain 1    score: 20.1 bits;  conditional E-value: 6.1e-07
   TIGR02633  11 fggvkaldnidlklraGeivslcGenGaGkstlmkvlsg 49 
                 +g+   l+n  lkl+ G++ +l G nGaGkstlm+ +++
  MMETSP1137-20121227|6705_1 415 YGNRVLLHNTRLKLKRGKCYGLIGPNGAGKSTLMRSIAA 453
                 5666679***************************97765 PP

  == domain 2    score: 30.9 bits;  conditional E-value: 3.3e-10
   TIGR02633 397 pdlpiarlsGGnqqkavlakllllnprvlildeptrGvdvGakyeiyklinqlaqeGvaiivvsselaev 466
                  + p+++lsGG + +  l++ +l +p++l+ldept  vdv   + + k i+ l+++ ++ ++vs + a +
  MMETSP1137-20121227|6705_1 511 MHGPVGALSGGWRMRLALSRAMLKEPELLLLDEPTNHVDVHGVAWLTKYIQDLSNKSISSMIVSHDTAFL 580
                 45699**********************************************************9987655 PP

  == domain 3    score: 14.3 bits;  conditional E-value: 3.5e-05
   TIGR02633  14 vkaldnidlklraGeivslcGenGaGkstlmkvlsg 49 
                  ++l+ni++++     v++ G nGaGkst++k++ g
  MMETSP1137-20121227|6705_1 659 QNTLNNISVQVSMASRVAVIGVNGAGKSTMIKLMVG 694
                 5689****************************9876 PP

  == domain 4    score: 22.6 bits;  conditional E-value: 1.1e-07
   TIGR02633 397 pdlpiarlsGGnqqkavlakllllnprvlildeptrGvd 435
                  +  i++lsGG++ k vla  + ++p+v+ildept  +d
  MMETSP1137-20121227|6705_1 874 TYSKIGALSGGQKVKVVLAAAMWMEPHVIILDEPTNFLD 912
                 45679******************************9887 PP

>> TIGR01277  thiQ: thiamine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   0.0   0.00015    0.0098      12      46 ..     419     453 ..     411     469 .. 0.82
   2 !   33.4   0.0   1.1e-10     7e-09     102     203 ..     490     591 ..     485     601 .. 0.81
   3 !   21.8   0.0     4e-07   2.6e-05       2      54 ..     646     702 ..     645     717 .. 0.78
   4 !   19.6   0.0   1.8e-06   0.00012     100     209 ..     853     957 ..     846     961 .. 0.76

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 0.00015
   TIGR01277  12 hlplefdlsveaGervailGesGaGkstllnliaG 46 
                  l  +  l++++G+   ++G+ GaGkstl+  ia 
  MMETSP1137-20121227|6705_1 419 VLLHNTRLKLKRGKCYGLIGPNGAGKSTLMRSIAA 453
                 5555667999*******************988874 PP

  == domain 2    score: 33.4 bits;  conditional E-value: 1.1e-10
   TIGR01277 102 navqkekvedvarqvGia.dylerlpeelsGGqrqrvalarclvrekpillldepfsaldpklreemlalvkkladekkltlllvthslsdaaaiasqvvvve 203
                   + ke + ++ ++vG a d+++   + lsGG r r+al+r +++e  +llldep   +d +     l+   +  ++k ++ ++v+h+   + a+a+  v  e
  MMETSP1137-20121227|6705_1 490 PDKSKEDIAAMMTSVGFAsDLMHGPVGALSGGWRMRLALSRAMLKEPELLLLDEPTNHVDVHGVAW-LTKYIQDLSNKSISSMIVSHDTAFLDAVAQDCVHYE 591
                 5568999*********973666777799********************************886555.5555555678999999*****999988888777655 PP

  == domain 3    score: 21.8 bits;  conditional E-value: 4e-07
   TIGR01277   2 klddviyeykhl....plefdlsveaGervailGesGaGkstllnliaGflepasGe 54 
                 k++dv ++y +       + +++v+   rva++G  GaGkst+++l+ G l p +Ge
  MMETSP1137-20121227|6705_1 646 KMTDVSFRYPTReqntLNNISVQVSMASRVAVIGVNGAGKSTMIKLMVGELLPNEGE 702
                 566776666443111034578889999**************************9986 PP

  == domain 4    score: 19.6 bits;  conditional E-value: 1.8e-06
   TIGR01277 100 klnavq.kekvedvarqvGiadylerlpeelsGGqrqrvalarclvrekpillldepfsaldpklreemlalvkkladekkltlllvthslsdaaaiasqvvvvedGkikv 209
                 kl+a++ ++++++   ++  + y +   + lsGGq+ +v la  +  e  +++ldep   ld+      l  ++  +++    +++++h+ +   a   +v  v dG+ +v
  MMETSP1137-20121227|6705_1 853 KLTALNiQKHLDNFNLEMQFGTYSK--IGALSGGQKVKVVLAAAMWMEPHVIILDEPTNFLDRDS----LGALACAVKNFAGGVIIISHQREFYSALCPEVWSVVDGRCTV 957
                 6666652344566666666666644..478*****************************999653....344444555556689999999999999999999999998776 PP

>> TIGR03269  met_CoM_red_A2: methyl coenzyme M reductase system, component A2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.8   0.0   0.00021     0.014       9      45 ..     414     450 ..     378     471 .. 0.82
   2 !   49.8   0.0   6.6e-16   4.3e-14     156     340 ..     504     702 ..     490     708 .. 0.76
   3 !   24.8   0.0   2.5e-08   1.6e-06     427     511 ..     880     960 ..     870     978 .. 0.87

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 0.00021
   TIGR03269   9 kfdglevlknisleleeGevlGilGksGaGksvllhl 45 
                 ++ +   l+n  l+l+ G+  G++G  GaGks l++ 
  MMETSP1137-20121227|6705_1 414 AYGNRVLLHNTRLKLKRGKCYGLIGPNGAGKSTLMRS 450
                 5566677888888888888888888888888888864 PP

  == domain 2    score: 49.8 bits;  conditional E-value: 6.6e-16
   TIGR03269 156 vklehrithi.ardlsGGekqrvvlarqlakeplllladeptGtldpktaklvhealkeavkeedislvltshwpeviedlsdkaillekGeive..eGepeevvakflesvsevek.eke.............ve.vgediikvkdvskryisvdrGvvkavdnvslevkekeifGlvGtsGaGkttlskilaGvleptsGe 340
                 v +   ++h     lsGG + r+ l r + kep lll dept  +d +    + + +++   +++is ++ sh +  ++ +++  +  ek    +  +G+ +e v+   e+    e  +++             v    + +ik+ dvs ry + ++    +++n+s++v  +    ++G+ GaGk+t+ k+++G l p +Ge
  MMETSP1137-20121227|6705_1 504 VGFASDLMHGpVGALSGGWRMRLALSRAMLKEPELLLLDEPTNHVDVHGVAWLTKYIQDLS-NKSISSMIVSHDTAFLDAVAQDCVHYEKNRKLKvyKGNLSEFVKLVPEAKAYYELeSENvafsfpdpgmlegVTsKTKALIKMTDVSFRYPTREQN---TLNNISVQVSMASRVAVIGVNGAGKSTMIKLMVGELLPNEGE 702
                 555555666414579**************************************99998865.667888888*****************998755412688888776544433322221122111111111111133135789***********99986...57899***********************************98 PP

  == domain 3    score: 24.8 bits;  conditional E-value: 2.5e-08
   TIGR03269 427 elseGerhrvalaqvlikeprivildeptGtmdpitkvkvaesilkareeleetfvivshdmdfvlevcdraalmrdGkivkiGd 511
                  ls G++ +v la  +  ep+++ildept  +d     +   ++  a +++    +i+sh+ +f   +c  +  + dG+   +G+
  MMETSP1137-20121227|6705_1 880 ALSGGQKVKVVLAAAMWMEPHVIILDEPTNFLDR----DSLGALACAVKNFAGGVIIISHQREFYSALCPEVWSVVDGRCTVTGS 960
                 6999*************************99995....4555667788899999***************9999999998877775 PP

>> TIGR03265  PhnT2: putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   3.3e-05    0.0021      14      51 ..     415     452 ..     408     458 .. 0.91
   2 !   37.2   0.0   6.5e-12   4.2e-10     111     195 ..     493     577 ..     486     594 .. 0.89
   3 !   10.1   0.0    0.0012     0.075      16      58 ..     658     700 ..     641     712 .. 0.81
   4 !   23.3   0.0   1.1e-07   6.9e-06     111     167 ..     855     913 ..     836     938 .. 0.81

  Alignments for each domain:
  == domain 1    score: 15.1 bits;  conditional E-value: 3.3e-05
   TIGR03265  14 feaftalkdislsvkkgelvclLGPsGCGkttLLriia 51 
                 +++   l++  l++k+g    l+GP G Gk+tL+r ia
  MMETSP1137-20121227|6705_1 415 YGNRVLLHNTRLKLKRGKCYGLIGPNGAGKSTLMRSIA 452
                 777888999***************************98 PP

  == domain 2    score: 37.2 bits;  conditional E-value: 6.5e-12
   TIGR03265 111 vaerveelLelvglsgseekyP.gqlsGGqqqrvaLaralalsPglLLLDePlsaLDakvrekLreelkklqrklgvttimvthdq 195
                  +e ++ ++  vg+ +     P g lsGG + r+aL+ra+   P+lLLLDeP   +D +  + L + +++l +k ++  ++v hd 
  MMETSP1137-20121227|6705_1 493 SKEDIAAMMTSVGFASDLMHGPvGALSGGWRMRLALSRAMLKEPELLLLDEPTNHVDVHGVAWLTKYIQDLSNK-SISSMIVSHDT 577
                 6778888999999988777777579**********************************************988.8********96 PP

  == domain 3    score: 10.1 bits;  conditional E-value: 0.0012
   TIGR03265  16 aftalkdislsvkkgelvclLGPsGCGkttLLriiaGLekqda 58 
                 + ++l++is++v+    v+++G  G Gk+t+++++ G   +++
  MMETSP1137-20121227|6705_1 658 EQNTLNNISVQVSMASRVAVIGVNGAGKSTMIKLMVGELLPNE 700
                 5689*****************************9999555555 PP

  == domain 4    score: 23.3 bits;  conditional E-value: 1.1e-07
   TIGR03265 111 vaerveelLelvglsgseekyP..gqlsGGqqqrvaLaralalsPglLLLDePlsaLDa 167
                 +a ++++ L+  +l+ +   y   g lsGGq+ +v La a+ + P++++LDeP   LD 
  MMETSP1137-20121227|6705_1 855 TALNIQKHLDNFNLEMQFGTYSkiGALSGGQKVKVVLAAAMWMEPHVIILDEPTNFLDR 913
                 55577888888888888888864478****************************99995 PP

>> TIGR02142  modC_ABC: molybdate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   0.0     0.029       1.9      19      44 ..     427     452 ..     408     461 .. 0.71
   2 !   42.1   0.0   2.2e-13   1.4e-11     122     204 ..     508     589 ..     488     606 .. 0.86
   3 !   15.1   0.0   3.4e-05    0.0022      11      53 ..     660     702 ..     650     705 .. 0.84
   4 !   20.6   0.0   7.2e-07   4.6e-05     129     216 ..     878     961 ..     855     997 .. 0.82

  Alignments for each domain:
  == domain 1    score: 5.5 bits;  conditional E-value: 0.029
   TIGR02142  19 elpgkgvtalFGrsGsGktslirlia 44 
                 +l+     +l G  G+Gk++l+r ia
  MMETSP1137-20121227|6705_1 427 KLKRGKCYGLIGPNGAGKSTLMRSIA 452
                 334446779**************998 PP

  == domain 2    score: 42.1 bits;  conditional E-value: 2.2e-13
   TIGR02142 122 ehLleRlpgkLsGGekqRvaigRAlLssPeLLlmDePLaaLDekrkkeilPyLerlsaelkiPilyvsHsldevarladrvvv 204
                 + L++  +g LsGG + R a++RA+L +PeLLl+DeP   +D +  + +  y++ ls++ +i  + vsH+   +  +a+  v 
  MMETSP1137-20121227|6705_1 508 SDLMHGPVGALSGGWRMRLALSRAMLKEPELLLLDEPTNHVDVHGVAWLTKYIQDLSNK-SISSMIVSHDTAFLDAVAQDCVH 589
                 67999999************************************************987.799999****9988888877665 PP

  == domain 3    score: 15.1 bits;  conditional E-value: 3.4e-05
   TIGR02142  11 dfeLdvdlelpgkgvtalFGrsGsGktslirliaGLtrpdege 53 
                 ++  +++++++   ++a+ G+ G+Gk+++i+l+ G + p+ege
  MMETSP1137-20121227|6705_1 660 NTLNNISVQVSMASRVAVIGVNGAGKSTMIKLMVGELLPNEGE 702
                 55557888999999*********************99999886 PP

  == domain 4    score: 20.6 bits;  conditional E-value: 7.2e-07
   TIGR02142 129 pgkLsGGekqRvaigRAlLssPeLLlmDePLaaLDekrkkeilPyLerlsaelkiPilyvsHsldevarladrvvvledGrvkaagkl 216
                  g LsGG k +v ++ A+  +P+++++DeP   LD+ +    l  L    +++   ++ +sH+ +    l  +v  + dGr + +g+ 
  MMETSP1137-20121227|6705_1 878 IGALSGGQKVKVVLAAAMWMEPHVIILDEPTNFLDRDS----LGALACAVKNFAGGVIIISHQREFYSALCPEVWSVVDGRCTVTGSE 961
                 689********************************877....5566777777888899999999999999999999999999888864 PP

>> TIGR02324  CP_lyasePhnL: phosphonate C-P lyase system protein PhnL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.9   0.0   3.4e-07   2.2e-05      23      56 ..     420     453 ..     413     460 .. 0.90
   2 !   24.5   0.0   5.5e-08   3.5e-06     124     218 ..     492     586 ..     484     592 .. 0.88
   3 !   19.3   0.0     2e-06   0.00013      20      64 ..     658     702 ..     644     735 .. 0.81
   4 !   15.8   0.0   2.4e-05    0.0016     125     208 ..     855     936 ..     838     948 .. 0.73

  Alignments for each domain:
  == domain 1    score: 21.9 bits;  conditional E-value: 3.4e-07
   TIGR02324  23 vlkevsleveaGelvalsGksGaGkstllkslya 56 
                  l++ +l+++ G++  l+G+ GaGkstl++s+ a
  MMETSP1137-20121227|6705_1 420 LLHNTRLKLKRGKCYGLIGPNGAGKSTLMRSIAA 453
                 578999*************************966 PP

  == domain 2    score: 24.5 bits;  conditional E-value: 5.5e-08
   TIGR02324 124 earakakellarlniperLWslaPatfsGGekqRvniaraliadrPiLLLdePtasLdaanrkvvvelikeakargaaligifhdeevrelvadr 218
                 ++++  +++++ +  +  L + +    sGG + R+ ++ra++++  +LLLdePt  +d    +   + i+++ ++ ++ + + hd +  ++va+ 
  MMETSP1137-20121227|6705_1 492 KSKEDIAAMMTSVGFASDLMHGPVGALSGGWRMRLALSRAMLKEPELLLLDEPTNHVDVHGVAWLTKYIQDLSNKSISSMIVSHDTAFLDAVAQD 586
                 5667778888888999999999999******************8888999***********************9999999999999888887765 PP

  == domain 3    score: 19.3 bits;  conditional E-value: 2e-06
   TIGR02324  20 klpvlkevsleveaGelvalsGksGaGkstllkslyanYlpesgr 64 
                 + ++l+++s++v+    va++G  GaGkst++k + ++ lp+ g+
  MMETSP1137-20121227|6705_1 658 EQNTLNNISVQVSMASRVAVIGVNGAGKSTMIKLMVGELLPNEGE 702
                 46789**********************************999875 PP

  == domain 4    score: 15.8 bits;  conditional E-value: 2.4e-05
   TIGR02324 125 arakakellarlniperLWslaP.atfsGGekqRvniaraliadrPiLLLdePtasLdaanrkvvvelikeakargaaligifhd 208
                 ++ + ++ l ++n+  +  +++     sGG k +v +a a+ ++  +++LdePt  Ld         l   +k+    +i i h+
  MMETSP1137-20121227|6705_1 855 TALNIQKHLDNFNLEMQFGTYSKiGALSGGQKVKVVLAAAMWMEPHVIILDEPTNFLDRDSLG---ALACAVKNFAGGVIIISHQ 936
                 556778888888888888888752589****************88899*********876554...3444444444445555555 PP

>> TIGR03005  ectoine_ehuA: ectoine/hydroxyectoine ABC transporter, ATP-binding protein EhuA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.4   0.0   0.00023     0.015       9      46 ..     414     451 ..     409     482 .. 0.86
   2 !   33.8   0.0   6.7e-11   4.3e-09     129     224 ..     499     594 ..     486     608 .. 0.88
   3 !   12.0   0.0   0.00029     0.019       5      47 ..     649     693 ..     645     711 .. 0.80
   4 !   22.2   0.0   2.3e-07   1.5e-05     146     193 ..     880     927 ..     861     961 .. 0.80

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 0.00023
   TIGR03005   9 rfgeltvldglelevaaGekvaliGpsGsGkstilril 46 
                  +g+  +l++  l++++G+   liGp G+Gkst++r +
  MMETSP1137-20121227|6705_1 414 AYGNRVLLHNTRLKLKRGKCYGLIGPNGAGKSTLMRSI 451
                 588889999**************************965 PP

  == domain 2    score: 33.8 bits;  conditional E-value: 6.7e-11
   TIGR03005 129 elldmvGladkadalpa.qlsGGqkqrvaiaralalrpkvllfdevtsaldpelveevlnvlrrlasetdltmllvthemgfarefadrvlffdkGk 224
                  ++  vG+a    + p+  lsGG + r+a++ra+  +p +ll+de+t  +d + v  + + +++l++ + ++ ++v+h+  f   +a+  + ++k +
  MMETSP1137-20121227|6705_1 499 AMMTSVGFASDLMHGPVgALSGGWRMRLALSRAMLKEPELLLLDEPTNHVDVHGVAWLTKYIQDLSN-KSISSMIVSHDTAFLDAVAQDCVHYEKNR 594
                 567889**********846**********************************************76.5788889************9999999877 PP

  == domain 3    score: 12.0 bits;  conditional E-value: 0.00029
   TIGR03005   5 dvtkrf..geltvldglelevaaGekvaliGpsGsGkstilrilm 47 
                 dv+ r+   e + l++++++v+   +va+iG  G+Gkst++++++
  MMETSP1137-20121227|6705_1 649 DVSFRYptREQNTLNNISVQVSMASRVAVIGVNGAGKSTMIKLMV 693
                 55555522356789**************************99765 PP

  == domain 4    score: 22.2 bits;  conditional E-value: 2.3e-07
   TIGR03005 146 qlsGGqkqrvaiaralalrpkvllfdevtsaldpelveevlnvlrrla 193
                  lsGGqk +v +a a+ ++p+v+++de+t  ld + ++ +   ++++a
  MMETSP1137-20121227|6705_1 880 ALSGGQKVKVVLAAAMWMEPHVIILDEPTNFLDRDSLGALACAVKNFA 927
                 69*******************************998887777666665 PP

>> TIGR00955  3a01204: pigment precursor permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   1.6e-05     0.001      35      78 ..     410     458 ..     388     472 .. 0.80
   2 !   28.5   0.0   1.9e-09   1.2e-07     163     221 ..     514     572 ..     491     578 .. 0.85
   3 !   12.8   0.0   0.00011    0.0072      20      74 ..     641     695 ..     617     723 .. 0.76
   4 !   18.8   0.0   1.6e-06    0.0001     159     213 ..     873     927 ..     838     960 .. 0.83

  Alignments for each domain:
  == domain 1    score: 15.6 bits;  conditional E-value: 1.6e-05
   TIGR00955  35 k.....pekellknvsGvaksGellAvlGsSGaGKtTLlnalafrsekg 78 
                 +     +++ ll+n   ++k G+   ++G+ GaGK+TL+  +a    +g
  MMETSP1137-20121227|6705_1 410 EfslayGNRVLLHNTRLKLKRGKCYGLIGPNGAGKSTLMRSIAADLVEG 458
                 2334447889******************************999876666 PP

  == domain 2    score: 28.5 bits;  conditional E-value: 1.9e-09
   TIGR00955 163 rvkglSgGerkRlalaselltdPilLfcDEPTsGLDsfsaasvvkvLkklaqkgktvil 221
                  v +lSgG r Rlal+  +l++P lL++DEPT   D    a + k +++l++k  + ++
  MMETSP1137-20121227|6705_1 514 PVGALSGGWRMRLALSRAMLKEPELLLLDEPTNHVDVHGVAWLTKYIQDLSNKSISSMI 572
                 4558***********************************************99765554 PP

  == domain 3    score: 12.8 bits;  conditional E-value: 0.00011
   TIGR00955  20 kkllvkrleealarkkpekellknvsGvaksGellAvlGsSGaGKtTLlnalafr 74 
                 +k l+k++   +     e++ l+n+s ++     +Av+G  GaGK+T+++ +   
  MMETSP1137-20121227|6705_1 641 TKALIKMTDVSFRYPTREQNTLNNISVQVSMASRVAVIGVNGAGKSTMIKLMVGE 695
                 445555555555555578999***************************9987655 PP

  == domain 4    score: 18.8 bits;  conditional E-value: 1.6e-06
   TIGR00955 159 gvpgrvkglSgGerkRlalaselltdPilLfcDEPTsGLDsfsaasvvkvLkkla 213
                 g+  ++ +lSgG++ ++ la  +  +P+++++DEPT  LD  s   +  ++k++a
  MMETSP1137-20121227|6705_1 873 GTYSKIGALSGGQKVKVVLAAAMWMEPHVIILDEPTNFLDRDSLGALACAVKNFA 927
                 44555668********************************888887777777776 PP

>> TIGR03258  PhnT: 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   0.0   8.3e-07   5.3e-05      14      56 ..     411     453 ..     405     477 .. 0.91
   2 !   23.7   0.0   7.2e-08   4.6e-06     121     199 ..     499     576 ..     491     593 .. 0.77
   3 !   11.9   0.0   0.00028     0.018       8      62 ..     644     700 ..     638     710 .. 0.82
   4 !   20.3   0.0   7.7e-07   4.9e-05     104     172 ..     848     914 ..     834     956 .. 0.81

  Alignments for each domain:
  == domain 1    score: 20.2 bits;  conditional E-value: 8.3e-07
   TIGR03258  14 lrvaygarvvlddlsleieaGellallGksGsGkttllravaG 56 
                 +++ayg rv+l++  l+++ G+   l+G+ G+Gk+tl+r +a 
  MMETSP1137-20121227|6705_1 411 FSLAYGNRVLLHNTRLKLKRGKCYGLIGPNGAGKSTLMRSIAA 453
                 6899************************************985 PP

  == domain 2    score: 23.7 bits;  conditional E-value: 7.2e-08
   TIGR03258 121 dalklvqls.daaarlpaqlsGGqqqrvalaralvvrpdvllldeplsaldaqlrasvveelkalhrelpeltvlyvthd 199
                   +  v+++ d  +     lsGG + r+al+ra+  +p++llldep   +d +  a + + ++ l ++   ++ ++v+hd
  MMETSP1137-20121227|6705_1 499 AMMTSVGFAsDLMHGPVGALSGGWRMRLALSRAMLKEPELLLLDEPTNHVDVHGVAWLTKYIQDLSNK--SISSMIVSHD 576
                 5555666641444444468********************************99888888888887765..3445556666 PP

  == domain 3    score: 11.9 bits;  conditional E-value: 0.00028
   TIGR03258   8 Gvvleslrvaygar..vvlddlsleieaGellallGksGsGkttllravaGfvkadG 62 
                  +++ +++ +y +r    l+++s+++     +a++G  G+Gk+t+++++ G + ++ 
  MMETSP1137-20121227|6705_1 644 LIKMTDVSFRYPTReqNTLNNISVQVSMASRVAVIGVNGAGKSTMIKLMVGELLPNE 700
                 577888888997652268*****************************9999766654 PP

  == domain 4    score: 20.3 bits;  conditional E-value: 7.7e-07
   TIGR03258 104 GlrarkqskaliaervadalklvqlsdaaarlpaqlsGGqqqrvalaralvvrpdvllldeplsaldaq 172
                 G+ ++k +  +i++ + +    +q++ +++     lsGGq+ +v la a+ ++p+v++ldep   ld +
  MMETSP1137-20121227|6705_1 848 GIATKKLTALNIQKHLDNFNLEMQFGTYSK--IGALSGGQKVKVVLAAAMWMEPHVIILDEPTNFLDRD 914
                 666667776777777666666667776664..357****************************999965 PP

>> TIGR02314  ABC_MetN: D-methionine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0   1.6e-05     0.001      21      51 ..     421     451 ..     411     471 .. 0.89
   2 !   19.6   0.0   1.3e-06   8.2e-05     117     209 ..     493     585 ..     482     622 .. 0.76
   3 !   18.6   0.0   2.5e-06   0.00016       6      61 ..     649     704 ..     643     717 .. 0.79
   4 !   19.7   0.0   1.1e-06   7.4e-05     139     219 ..     879     955 ..     867     979 .. 0.85

  Alignments for each domain:
  == domain 1    score: 16.0 bits;  conditional E-value: 1.6e-05
   TIGR02314  21 ldnvslfvpkgqifgvigasgagkstlircv 51 
                 l+n  l + +g+ +g+ig  gagkstl+r +
  MMETSP1137-20121227|6705_1 421 LHNTRLKLKRGKCYGLIGPNGAGKSTLMRSI 451
                 78999************************87 PP

  == domain 2    score: 19.6 bits;  conditional E-value: 1.3e-06
   TIGR02314 117 ikrkvtellalvglsdkkdsyp.snlsggqkqrvaiaralasepkvllcdeatsaldpattqsilellkeinrrlgltillithemdvvkricd 209
                  k+ ++ +++ vg++      p   lsgg + r+a++ra+  ep +ll de t  +d      + + ++++  + +++ ++++h+   +  + +
  MMETSP1137-20121227|6705_1 493 SKEDIAAMMTSVGFASDLMHGPvGALSGGWRMRLALSRAMLKEPELLLLDEPTNHVDVHGVAWLTKYIQDLSNK-SISSMIVSHDTAFLDAVAQ 585
                 4555666777888765544444268********************************99999999999998655.6777888888766666553 PP

  == domain 3    score: 18.6 bits;  conditional E-value: 2.5e-06
   TIGR02314   6 kiskvfdqgdkkikaldnvslfvpkgqifgvigasgagkstlircv..nllekptsga 61 
                 ++   f   +++ ++l+n+s+ v     + vig  gagkst+i+ +  +ll +  +g+
  MMETSP1137-20121227|6705_1 649 DV--SFRYPTREQNTLNNISVQVSMASRVAVIGVNGAGKSTMIKLMvgELLPNEGEGS 704
                 33..388889999******************************965235666666665 PP

  == domain 4    score: 19.7 bits;  conditional E-value: 1.1e-06
   TIGR02314 139 snlsggqkqrvaiaralasepkvllcdeatsaldpattqsilellkeinrrlgltillithemdvvkricdevavidkgel 219
                   lsggqk +v +a a+  ep+v++ de t  ld  +  ++   +k+    ++  +++i+h+ +    +c ev  + +g+ 
  MMETSP1137-20121227|6705_1 879 GALSGGQKVKVVLAAAMWMEPHVIILDEPTNFLDRDSLGALACAVKN----FAGGVIIISHQREFYSALCPEVWSVVDGRC 955
                 579*******************************8766665555554....455678899****99999999987777765 PP

>> TIGR02770  nickel_nikD: nickel import ATP-binding protein NikD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.0   7.7e-05    0.0049       2      33 ..     421     452 ..     420     469 .. 0.86
   2 !   31.3   0.0   4.1e-10   2.6e-08      95     197 ..     489     588 ..     472     598 .. 0.88
   3 ?    6.3   0.0     0.018       1.2       3      39 ..     663     699 ..     661     731 .. 0.81
   4 !   22.7   0.0   1.7e-07   1.1e-05     125     204 ..     880     955 ..     835     970 .. 0.85

  Alignments for each domain:
  == domain 1    score: 14.1 bits;  conditional E-value: 7.7e-05
   TIGR02770   2 vqdvnlslkrgkvlalvGesGsGksltalail 33 
                  ++  l+lkrgk+ +l+G  G+Gks+   +i 
  MMETSP1137-20121227|6705_1 421 LHNTRLKLKRGKCYGLIGPNGAGKSTLMRSIA 452
                 68899********************9877765 PP

  == domain 2    score: 31.3 bits;  conditional E-value: 4.1e-10
   TIGR02770  95 lskqakelivealeavgLeeaeevlkkypfelsGGmlqRvmialallleaplliaDePttdlDvvvqaevLklleelrekrglgillithDlgvvaeladeva 197
                 l +++ke i+++++ vg +    +++     lsGG   R+ +  a+l e+ ll+ DePt  +Dv   a + k++++l +k+  + ++++hD + +  +a++ +
  MMETSP1137-20121227|6705_1 489 LPDKSKEDIAAMMTSVGFA--SDLMHGPVGALSGGWRMRLALSRAMLKEPELLLLDEPTNHVDVHGVAWLTKYIQDLSNKSISS-MIVSHDTAFLDAVAQDCV 588
                 5578889999999999998..899999999***********************************************9877666.579*******99999865 PP

  == domain 3    score: 6.3 bits;  conditional E-value: 0.018
   TIGR02770   3 qdvnlslkrgkvlalvGesGsGksltalailglldke 39 
                 +++++++ +   +a++G  G+Gks+  + ++g l ++
  MMETSP1137-20121227|6705_1 663 NNISVQVSMASRVAVIGVNGAGKSTMIKLMVGELLPN 699
                 68999*******************9988777765554 PP

  == domain 4    score: 22.7 bits;  conditional E-value: 1.7e-07
   TIGR02770 125 elsGGmlqRvmialallleaplliaDePttdlDvvvqaevLklleelrekrglgillithDlgvvaeladevavmekGki 204
                  lsGG   +v++a a+ +e+ ++i DePt  lD ++    L  l   +++++ g+++i+h     + l  ev  + +G+ 
  MMETSP1137-20121227|6705_1 880 ALSGGQKVKVVLAAAMWMEPHVIILDEPTNFLDRDS----LGALACAVKNFAGGVIIISHQREFYSALCPEVWSVVDGRC 955
                 69*******************************876....8999999**************9999999999988888875 PP

>> TIGR01184  ntrCD: nitrate ABC transporter, ATP-binding proteins C and D
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.2   0.0    0.0057      0.37       2      32 ..     422     452 ..     421     464 .. 0.89
   2 !   25.3   0.0   3.3e-08   2.1e-06      79     175 ..     482     577 ..     472     588 .. 0.81
   3 !   12.0   0.0    0.0004     0.026       1      40 [.     662     701 ..     662     715 .. 0.91
   4 !   18.4   0.0   4.3e-06   0.00028      95     147 ..     859     913 ..     845     938 .. 0.81

  Alignments for each domain:
  == domain 1    score: 8.2 bits;  conditional E-value: 0.0057
   TIGR01184   2 kdvdleikkgefislighsgcgkstllnlia 32 
                 ++  l++k+g+   lig  g gkstl+  ia
  MMETSP1137-20121227|6705_1 422 HNTRLKLKRGKCYGLIGPNGAGKSTLMRSIA 452
                 67899*********************98776 PP

  == domain 2    score: 25.3 bits;  conditional E-value: 3.3e-08
   TIGR01184  79 vdavlrdlskserreiveehielvgl.reaadkrpeqlsggmkqrvaiaralsirpklllldepfgaldaltreelqekllkiveearvtvlmvthdv 175
                 +d v+ dl+ + +++i       vg+ ++  +  ++ lsgg + r+a++ra+   p+lllldep   +d      l +  ++ + +++++ ++v+hd 
  MMETSP1137-20121227|6705_1 482 IDFVHMDLPDKSKEDIAAMM-TSVGFaSDLMHGPVGALSGGWRMRLALSRAMLKEPELLLLDEPTNHVDVHGVAWLTK-YIQDLSNKSISSMIVSHDT 577
                 67788888888888876654.455551566788999*********************************988887765.5666677888999999995 PP

  == domain 3    score: 12.0 bits;  conditional E-value: 0.0004
   TIGR01184   1 lkdvdleikkgefislighsgcgkstllnliaglekptsg 40 
                 l++++++++    +++ig  g gkst++ l+ g   p +g
  MMETSP1137-20121227|6705_1 662 LNNISVQVSMASRVAVIGVNGAGKSTMIKLMVGELLPNEG 701
                 6899****************************99888877 PP

  == domain 4    score: 18.4 bits;  conditional E-value: 4.3e-06
   TIGR01184  95 veehielvglre..aadkrpeqlsggmkqrvaiaralsirpklllldepfgalda 147
                 +++h++  +l+    +  +++ lsgg k +v +a a+ + p++++ldep   ld 
  MMETSP1137-20121227|6705_1 859 IQKHLDNFNLEMqfGTYSKIGALSGGQKVKVVLAAAMWMEPHVIILDEPTNFLDR 913
                 566676666654114567899****************************998884 PP

>> TIGR01192  chvA: glucan exporter ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   0.0     0.014      0.87     351     379 ..     421     449 ..     357     455 .. 0.87
   2 !   22.8   0.0     1e-07   6.5e-06     471     529 ..     517     576 ..     502     606 .. 0.85
   3 !   22.2   0.0   1.5e-07   9.8e-06     292     383 ..     603     694 ..     596     704 .. 0.82
   4 !    6.5   0.0    0.0087      0.56     470     506 ..     879     915 ..     844     937 .. 0.80

  Alignments for each domain:
  == domain 1    score: 5.9 bits;  conditional E-value: 0.014
   TIGR01192 351 vrdvsfeakagqtvaivgptgagkttlin 379
                 +++  ++ k g+   ++gp gagk+tl+ 
  MMETSP1137-20121227|6705_1 421 LHNTRLKLKRGKCYGLIGPNGAGKSTLMR 449
                 588999********************985 PP

  == domain 2    score: 22.8 bits;  conditional E-value: 1e-07
   TIGR01192 471 rlsggerqrlaiarailknapilvldeatsaldvetearvkdaidalr.knrttfiiahr 529
                  lsgg r rla++ra+lk+  +l+lde t  +dv   a + + i+ l+ k  +++i++h 
  MMETSP1137-20121227|6705_1 517 ALSGGWRMRLALSRAMLKEPELLLLDEPTNHVDVHGVAWLTKYIQDLSnKSISSMIVSHD 576
                 59**********************************999988887776155567888886 PP

  == domain 3    score: 22.2 bits;  conditional E-value: 1.5e-07
   TIGR01192 292 lkafvtqivearakledffdledsvkereepadarel.knvkgavefrdisfefanssqg.vrdvsfeakagqtvaivgptgagkttlinllqr 383
                 l++fv+++ ea+a  e  ++ e+ ++   +p+ ++ + ++ k  +++ d+sf ++  +q  + ++s ++     va++g  gagk+t+i l+  
  MMETSP1137-20121227|6705_1 603 LSEFVKLVPEAKAYYE--LESENVAFSFPDPGMLEGVtSKTKALIKMTDVSFRYPTREQNtLNNISVQVSMASRVAVIGVNGAGKSTMIKLMVG 694
                 6788888888888665..56678888999999998762567889***********998862689**************************9865 PP

  == domain 4    score: 6.5 bits;  conditional E-value: 0.0087
   TIGR01192 470 nrlsggerqrlaiarailknapilvldeatsaldvet 506
                   lsgg++ ++ +a a+  +  +++lde t  ld ++
  MMETSP1137-20121227|6705_1 879 GALSGGQKVKVVLAAAMWMEPHVIILDEPTNFLDRDS 915
                 479******************************9775 PP

>> TIGR01186  proV: glycine betaine/L-proline transport ATP binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.2   0.0   0.00049     0.031       4      40 ..     416     452 ..     414     470 .. 0.86
   2 !   20.2   0.0   8.6e-07   5.5e-05     108     189 ..     495     576 ..     484     583 .. 0.79
   3 !   11.0   0.1   0.00056     0.036       6      47 ..     659     700 ..     655     706 .. 0.85
   4 !   13.3   0.0   0.00011    0.0073     129     161 ..     880     912 ..     848     937 .. 0.81

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 0.00049
   TIGR01186   4 GlklgvndvdleieeGeiiviiGlsGsGkstlvrlln 40 
                 G ++ +++  l+++ G  + +iG+ G+Gkstl+r + 
  MMETSP1137-20121227|6705_1 416 GNRVLLHNTRLKLKRGKCYGLIGPNGAGKSTLMRSIA 452
                 6667788999***********************9874 PP

  == domain 2    score: 20.2 bits;  conditional E-value: 8.6e-07
   TIGR01186 108 ekalealklvdl.eeyedryPdelsGGmqqrvGlaralaaePdlllmdeafsaldPlirdelqdelvklqkklqktivfithd 189
                 e    ++  v++  + ++     lsGG + r+ l ra+  eP+lll+de+   +d      l + +++l +k   ++  ++hd
  MMETSP1137-20121227|6705_1 495 EDIAAMMTSVGFaSDLMHGPVGALSGGWRMRLALSRAMLKEPELLLLDEPTNHVDVHGVAWLTKYIQDLSNKSISSM-IVSHD 576
                 55555667777766777777789***************************999998877777777777776665544.36776 PP

  == domain 3    score: 11.0 bits;  conditional E-value: 0.00056
   TIGR01186   6 klgvndvdleieeGeiiviiGlsGsGkstlvrllnrliePta 47 
                 + ++n++++++     + +iG+ G+Gkst+++l+   + P +
  MMETSP1137-20121227|6705_1 659 QNTLNNISVQVSMASRVAVIGVNGAGKSTMIKLMVGELLPNE 700
                 56789***************************9866555555 PP

  == domain 4    score: 13.3 bits;  conditional E-value: 0.00011
   TIGR01186 129 elsGGmqqrvGlaralaaePdlllmdeafsald 161
                  lsGG++ +v la a+ +eP ++++de+   ld
  MMETSP1137-20121227|6705_1 880 ALSGGQKVKVVLAAAMWMEPHVIILDEPTNFLD 912
                 79**************************99888 PP

>> TIGR01187  potA: polyamine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.0      0.12       7.9       1      17 [.     436     452 ..     436     477 .. 0.93
   2 !   26.2   0.0   1.3e-08   8.2e-07      99     161 ..     516     577 ..     491     586 .. 0.85
   3 ?    1.7   0.0      0.37        24       2      25 ..     678     701 ..     677     719 .. 0.83
   4 !   22.8   0.0   1.4e-07     9e-06      90     134 ..     870     914 ..     835     935 .. 0.77

  Alignments for each domain:
  == domain 1    score: 3.3 bits;  conditional E-value: 0.12
   TIGR01187   1 lLGpsGsGkttlLrlla 17 
                 l+Gp G+Gk+tl+r +a
  MMETSP1137-20121227|6705_1 436 LIGPNGAGKSTLMRSIA 452
                 78************998 PP

  == domain 2    score: 26.2 bits;  conditional E-value: 1.3e-08
   TIGR01187  99 sqlsGGqrqrvalaravvkkPkiLLlDeplsaLDkkLrdqmqlelkalqeklGitvvlvthDq 161
                   lsGG r r+al+ra+ k+P++LLlDep   +D +    + + +++l +k  i  ++v hD 
  MMETSP1137-20121227|6705_1 516 GALSGGWRMRLALSRAMLKEPELLLLDEPTNHVDVHGVAWLTKYIQDLSNK-SISSMIVSHDT 577
                 579*******************************99988888888888877.68888888885 PP

  == domain 3    score: 1.7 bits;  conditional E-value: 0.37
   TIGR01187   2 LGpsGsGkttlLrllaGleeldsG 25 
                 +G  G+Gk+t+++l+ G   +++G
  MMETSP1137-20121227|6705_1 678 IGVNGAGKSTMIKLMVGELLPNEG 701
                 7999************98777777 PP

  == domain 4    score: 22.8 bits;  conditional E-value: 1.4e-07
   TIGR01187  90 leefakrkpsqlsGGqrqrvalaravvkkPkiLLlDeplsaLDkk 134
                 ++  + +k+  lsGGq+ +v la a+  +P++++lDep   LD+ 
  MMETSP1137-20121227|6705_1 870 MQFGTYSKIGALSGGQKVKVVLAAAMWMEPHVIILDEPTNFLDRD 914
                 3333457999********************************985 PP

>> TIGR00954  3a01203: peroxysomal long chain fatty acyl transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.8   0.0    0.0001    0.0065     465     500 ..     417     452 ..     397     456 .. 0.92
   2 !   12.9   0.0   9.2e-05    0.0059     583     640 ..     517     577 ..     498     582 .. 0.76
   3 !   20.2   0.0   5.5e-07   3.6e-05     443     526 ..     635     723 ..     596     730 .. 0.87
   4 !   12.6   0.0   0.00011    0.0073     583     640 ..     880     937 ..     822     941 .. 0.86

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 0.0001
   TIGR00954 465 gdvlieeLsfevksGnhlLiiGPnGcGKsslfRilg 500
                 + vl+++  +++k G+   +iGPnG GKs l+R ++
  MMETSP1137-20121227|6705_1 417 NRVLLHNTRLKLKRGKCYGLIGPNGAGKSTLMRSIA 452
                 689999999************************876 PP

  == domain 2    score: 12.9 bits;  conditional E-value: 9.2e-05
   TIGR00954 583 vLsgGekqRiamARlfyHkPkfavLDEctsAvsvdvEdkl...yelakevgitllsvshrk 640
                  LsgG + R+a+ R +   P+  +LDE t+ v v     l    + + ++ i+ + vsh +
  MMETSP1137-20121227|6705_1 517 ALSGGWRMRLALSRAMLKEPELLLLDEPTNHVDVHGVAWLtkyIQDLSNKSISSMIVSHDT 577
                 79****************************9987644433110344555667777777765 PP

  == domain 3    score: 20.2 bits;  conditional E-value: 5.5e-07
   TIGR00954 443 rgkveaqdngikfeniplvtP.egdvlieeLsfevksGnhlLiiGPnGcGKsslfRi.lgelWPvyg...glltkpeegklFyvPqrPY 526
                 +g   +++  ik+ ++    P   +  ++++s++v   + + +iG nG GKs + ++ +gel P  g   ++ +  ++ +l yv q+ +
  MMETSP1137-20121227|6705_1 635 EGVTSKTKALIKMTDVSFRYPtREQNTLNNISVQVSMASRVAVIGVNGAGKSTMIKLmVGELLPNEGegsPVIQRHPNMRLAYVAQHAF 723
                 5666788899***********6678899*************************998527******99988999999999*****99865 PP

  == domain 4    score: 12.6 bits;  conditional E-value: 0.00011
   TIGR00954 583 vLsgGekqRiamARlfyHkPkfavLDEctsAvsvdvEdklyelakevgitllsvshrk 640
                  LsgG+k ++ +A  ++  P+ ++LDE t+ +  d  ++l  ++k++   ++ +sh++
  MMETSP1137-20121227|6705_1 880 ALSGGQKVKVVLAAAMWMEPHVIILDEPTNFLDRDSLGALACAVKNFAGGVIIISHQR 937
                 69*********************************************99999999986 PP

>> TIGR01271  CFTR_protein: cystic fibrosis transmembrane conductor regulator (CFTR)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.6   0.0     0.007      0.45     440     477 ..     419     456 ..     382     468 .. 0.69
   2 !   17.9   0.0   1.4e-06     9e-05     540     582 ..     508     551 ..     491     583 .. 0.85
   3 !   14.7   0.0   1.2e-05    0.0008     441     482 ..     661     702 ..     641     765 .. 0.79
   4 !    7.6   0.0    0.0018      0.12    1352    1411 ..     879     937 ..     853     955 .. 0.72

  Alignments for each domain:
  == domain 1    score: 5.6 bits;  conditional E-value: 0.007
   TIGR01271 440 pvlknislklekgqllavagstgsgkssllmmilgele 477
                  +l+n  lkl++g+   + g  g+gks+l+  i  +l+
  MMETSP1137-20121227|6705_1 419 VLLHNTRLKLKRGKCYGLIGPNGAGKSTLMRSIAADLV 456
                 23567777777777777777777777777777766665 PP

  == domain 2    score: 17.9 bits;  conditional E-value: 1.4e-06
   TIGR01271 540 tvlgeggi.tlsggqrarislaravykdadlylldspfsyldvv 582
                   l++g + +lsgg r r++l+ra+ k+ +l lld p +++dv 
  MMETSP1137-20121227|6705_1 508 SDLMHGPVgALSGGWRMRLALSRAMLKEPELLLLDEPTNHVDVH 551
                 46889988569*******************************95 PP

  == domain 3    score: 14.7 bits;  conditional E-value: 1.2e-05
   TIGR01271 441 vlknislklekgqllavagstgsgkssllmmilgelepsegk 482
                  l nis+++     +av g  g+gks+++ +++gel p eg 
  MMETSP1137-20121227|6705_1 661 TLNNISVQVSMASRVAVIGVNGAGKSTMIKLMVGELLPNEGE 702
                 577888888888888888888888888888888888888875 PP

  == domain 4    score: 7.6 bits;  conditional E-value: 0.0018
   TIGR01271 1352 yvlsnghkqlmclarsilskakillldepsafldpvtlqiirktlkqafsnctvilsehr 1411
                    ls g k  + la ++    ++++ldep+ fld  +l  +  ++k  f+   +i+s  r
  MMETSP1137-20121227|6705_1  879 GALSGGQKVKVVLAAAMWMEPHVIILDEPTNFLDRDSLGALACAVK-NFAGGVIIISHQR 937 
                  3578888888888888888888888888888888888888877776.4777666666555 PP

>> TIGR03415  ABC_choXWV_ATP: choline ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.8   0.0   0.00028     0.018      35      71 ..     416     452 ..     410     457 .. 0.91
   2 !   15.0   0.0     3e-05    0.0019     157     198 ..     510     551 ..     489     579 .. 0.72
   3 ?    1.9   0.0       0.3        19      40      69 ..     662     691 ..     654     708 .. 0.88
   4 !   14.9   0.0   3.3e-05    0.0021     132     196 ..     845     912 ..     836     923 .. 0.79

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 0.00028
   TIGR03415  35 GlvlgvadasldveeGeilvlmGlsGsGkssllravn 71 
                 G+ +  +++ l++++G    l+G  G+Gks+l+r++ 
  MMETSP1137-20121227|6705_1 416 GNRVLLHNTRLKLKRGKCYGLIGPNGAGKSTLMRSIA 452
                 778889****************************985 PP

  == domain 2    score: 15.0 bits;  conditional E-value: 3e-05
   TIGR03415 157 WadkkvgelsGGmqqrvGlarafateadillmdePfsaldPl 198
                   +  vg lsGG + r+ l+ra+  e ++ll+deP   +d  
  MMETSP1137-20121227|6705_1 510 LMHGPVGALSGGWRMRLALSRAMLKEPELLLLDEPTNHVDVH 551
                 55566899***************************9888865 PP

  == domain 3    score: 1.9 bits;  conditional E-value: 0.3
   TIGR03415  40 vadasldveeGeilvlmGlsGsGkssllra 69 
                  +++s++v+    + ++G+ G+Gks++++ 
  MMETSP1137-20121227|6705_1 662 LNNISVQVSMASRVAVIGVNGAGKSTMIKL 691
                 6899999999999999***********986 PP

  == domain 4    score: 14.9 bits;  conditional E-value: 3.3e-05
   TIGR03415 132 elsGvakaerrk.rveeqlelvglaeW..adkkvgelsGGmqqrvGlarafateadillmdePfsald 196
                 e sG+a ++    +++++l+  +l+    +  k+g lsGG + +v la a+ +e  ++++deP   ld
  MMETSP1137-20121227|6705_1 845 EASGIATKKLTAlNIQKHLDNFNLEMQfgTYSKIGALSGGQKVKVVLAAAMWMEPHVIILDEPTNFLD 912
                 66677666544326778888888865412456889****************************99888 PP

>> TIGR01194  cyc_pep_trnsptr: cyclic peptide transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.0      0.33        21     361     386 ..     425     450 ..     416     456 .. 0.85
   2 !   11.6   0.0   0.00025     0.016     466     534 ..     514     581 ..     501     591 .. 0.87
   3 !   20.6   0.0   4.7e-07     3e-05     331     397 ..     639     702 ..     621     711 .. 0.90
   4 !    6.6   0.0    0.0079      0.51     444     498 ..     850     909 ..     832     957 .. 0.68

  Alignments for each domain:
  == domain 1    score: 1.3 bits;  conditional E-value: 0.33
   TIGR01194 361 dlriasGelvyivGenGcGkstlikl 386
                  l++++G+   ++G nG Gkstl++ 
  MMETSP1137-20121227|6705_1 425 RLKLKRGKCYGLIGPNGAGKSTLMRS 450
                 68899999999************975 PP

  == domain 2    score: 11.6 bits;  conditional E-value: 0.00025
   TIGR01194 466 tttdlstGqrkrlalvnayleerpvllldewaadqdpafkrvfyeellpdlkrrGktilvishddryfe 534
                    +ls G r rlal  a l+e  +lllde +   d      + ++ + dl  +  + +++shd  +++
  MMETSP1137-20121227|6705_1 514 PVGALSGGWRMRLALSRAMLKEPELLLLDEPTNHVDVH-GVAWLTKYIQDLSNKSISSMIVSHDTAFLD 581
                 5679**************************99999864.5678899******************98876 PP

  == domain 3    score: 20.6 bits;  conditional E-value: 4.7e-07
   TIGR01194 331 dksvdslelkdvrysykdvessegfalGpidlriasGelvyivGenGcGkstliklllGlyipqeGe 397
                  k+   +++ dv + y+  e     +l  i ++++    v ++G nG Gkst+ikl++G   p+eGe
  MMETSP1137-20121227|6705_1 639 SKTKALIKMTDVSFRYPTREQ---NTLNNISVQVSMASRVAVIGVNGAGKSTMIKLMVGELLPNEGE 702
                 688888999999999998765...57999************************************97 PP

  == domain 4    score: 6.6 bits;  conditional E-value: 0.0079
   TIGR01194 444 attylsrleledk.....vkvedlnystttdlstGqrkrlalvnayleerpvllldewaa 498
                 at+ l  l++++      ++++ + ys   +ls Gq+ ++ l +a   e  v++lde + 
  MMETSP1137-20121227|6705_1 850 ATKKLTALNIQKHldnfnLEMQFGTYSKIGALSGGQKVKVVLAAAMWMEPHVIILDEPTN 909
                 5666666666654111113456689********************99999999***9765 PP

>> TIGR02323  CP_lyasePhnK: phosphonate C-P lyase system protein PhnK
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.2   0.0   0.00062      0.04       8      52 ..     410     456 ..     404     468 .. 0.85
   2 !   15.0   0.0   4.3e-05    0.0027     141     206 ..     517     585 ..     501     604 .. 0.82
   3 !   10.0   0.0    0.0015     0.097       2      58 ..     643     703 ..     642     724 .. 0.75
   4 ?    3.0   0.0       0.2        13     139     197 ..     878     935 ..     855     947 .. 0.77

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 0.00062
   TIGR02323   8 elsksygskkgcr.vsf.lypGevlgivGesGsGkstllkalaarll 52 
                 e+s  yg+++ ++   + l  G+  g++G  G+Gkstl+ ++aa l+
  MMETSP1137-20121227|6705_1 410 EFSLAYGNRVLLHnTRLkLKRGKCYGLIGPNGAGKSTLMRSIAADLV 456
                 567788888887756667999**********************9886 PP

  == domain 2    score: 15.0 bits;  conditional E-value: 4.3e-05
   TIGR02323 141 afsGGmqqrlqiarnlvtrprlvfm.eptGGl.vsvqarllllrglvrelglaviivth.lavarllaq 206
                 a+sGG + rl ++r+++ +p l+++ ept  + v   a l    + + + +++ +iv+h  a    +aq
  MMETSP1137-20121227|6705_1 517 ALSGGWRMRLALSRAMLKEPELLLLdEPTNHVdVHGVAWLTKYIQDLSNKSISSMIVSHdTAFLDAVAQ 585
                 78**********************99***99877777877744444567899*****996666655555 PP

  == domain 3    score: 10.0 bits;  conditional E-value: 0.0015
   TIGR02323   2 pllevselsksygskkg..cr.vsf.lypGevlgivGesGsGkstllkalaarlladaGev 58 
                 +l++++++s  y +++   ++ +s  +     ++++G  G+Gkst++k + ++ll+++Ge 
  MMETSP1137-20121227|6705_1 643 ALIKMTDVSFRYPTREQntLNnISVqVSMASRVAVIGVNGAGKSTMIKLMVGELLPNEGEG 703
                 5666777777776544311334666666777899***********************9984 PP

  == domain 4    score: 3.0 bits;  conditional E-value: 0.2
   TIGR02323 139 paafsGGmqqrlqiarnlvtrprlvfm.eptGGlvsvqarllllrglvrelglaviivth 197
                   a+sGG + ++ +a ++  +p+++++ ept  l   +  l  l   v+++   vii++h
  MMETSP1137-20121227|6705_1 878 IGALSGGQKVKVVLAAAMWMEPHVIILdEPTNFLD--RDSLGALACAVKNFAGGVIIISH 935
                 5689*********************999***8773..22333455566666666666666 PP

>> TIGR01257  rim_protein: rim ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   0.1   2.7e-05    0.0017    1962    2130 ..     428     577 ..     421     588 .. 0.79
   2 !    7.6   0.0    0.0012     0.075    1936    1990 ..     643     697 ..     622     716 .. 0.79
   3 !   11.6   0.0   7.3e-05    0.0046    2067    2150 ..     877     957 ..     852     964 .. 0.82

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 2.7e-05
   TIGR01257 1962 vrpgecfgllgvngagktttfkmltgdttvtsgdatvagksiltnisdvhqnmgycpqfdaiddlltgrehlylyarlrgvpaeeiekvanwsikslglsl.yadrlagtysggnkrklstaialigcpplvlldepttgmdpqarrmlwntivsiiregravvltshsm 2130
                  ++ g+c+gl+g ngagk+t ++ ++ d  v      +    +  ++s  h +mg c +f  +d                 +p +  e +a   + s+g++        g+ sgg + +l+ + a++  p l+lldept  +d +    l + i  +  ++ + ++ sh  
  MMETSP1137-20121227|6705_1  428 LKRGKCYGLIGPNGAGKSTLMRSIAADL-VEGFPKEIRSVYVECDVSATHAEMG-CIDFVHMD-----------------LPDKSKEDIAAM-MTSVGFASdLMHGPVGALSGGWRMRLALSRAMLKEPELLLLDEPTNHVDVHGVAWLTKYIQDLSNKSISSMIVSHDT 577 
                  5789********************9996.5556677888889999********9.66665444.................466666666654.566666431455668999******************************99998888888888887777777777765 PP

  == domain 2    score: 7.6 bits;  conditional E-value: 0.0012
   TIGR01257 1936 dilrlneltkvysgtsspavdrlcvgvrpgecfgllgvngagktttfkmltgdtt 1990
                   ++++ +++  y+     +++ + v v     + ++gvngagk+t +k++ g+  
  MMETSP1137-20121227|6705_1  643 ALIKMTDVSFRYPTREQNTLNNISVQVSMASRVAVIGVNGAGKSTMIKLMVGELL 697 
                  3567778888888888888888999999999999999999999999998888754 PP

  == domain 3    score: 11.6 bits;  conditional E-value: 7.3e-05
   TIGR01257 2067 lagtysggnkrklstaialigcpplvlldepttgmdpqarrmlwntivsiiregravvltshsmeecealctrlaimvkgafqc 2150
                    g+ sgg+k k+  a a+   p +++ldept  +d ++   l     ++      v++ sh  e   alc  +  +v g   +
  MMETSP1137-20121227|6705_1  877 KIGALSGGQKVKVVLAAAMWMEPHVIILDEPTNFLDRDSLGALA---CAVKNFAGGVIIISHQREFYSALCPEVWSVVDGRCTV 957 
                  468999***************************99977655554...5555567789999***********9999888886555 PP

>> TIGR00957  MRP_assoc_pro: multi drug resistance-associated protein (MRP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.1   0.0   7.9e-05    0.0051     644     800 ..     411     557 ..     396     589 .. 0.61
   2 !   15.9   0.0   5.5e-06   0.00035     635     709 ..     643     723 ..     629     735 .. 0.77
   3 ?    4.9   0.0     0.012      0.74     760     792 ..     880     912 ..     866     920 .. 0.88

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 7.9e-05
   TIGR00957 644 ftwardepptlngltlsipegalvavvgqvgcgkssllsallaemdkvegkvalkgsvayvpqqawiqndslrenilfgkaleekyykavleacalladleilpsgdrteigekgvnlsggqkqrvslaravysdadiyllddplsavdahvakhif 800
                 f+ a ++   l++  l++ +g    ++g+ g gks+l+ ++ a+   veg  +   sv yv  +     + +   i f +   +++ k+ +   a+++ + +     +  +g     lsgg + r++l+ra+  + ++ lld+p   vd h    + 
  MMETSP1137-20121227|6705_1 411 FSLAYGNRVLLHNTRLKLKRGKCYGLIGPNGAGKSTLMRSIAAD--LVEGFPKEIRSV-YVECDVSATHAEM-GCIDFVHMDLPDKSKEDI--AAMMTSVGFASDLMHGPVG----ALSGGWRMRLALSRAMLKEPELLLLDEPTNHVDVHGVAWLT 557
                 55666666667777777777777777777777777777776664..367765555554.5555444433333.344444443333333333..2333333332222222222....59********************************9654443 PP

  == domain 2    score: 15.9 bits;  conditional E-value: 5.5e-06
   TIGR00957 635 nsitvknatftwardepptlngltlsipegalvavvgqvgcgkssllsallaemdkvegk..val....kgsvayvpqqaw 709
                   i + + +f +   e  tln++++++   + vav+g  g gks+++  +++e+   eg+    +    +  +ayv q a+
  MMETSP1137-20121227|6705_1 643 ALIKMTDVSFRYPTREQNTLNNISVQVSMASRVAVIGVNGAGKSTMIKLMVGELLPNEGEgsPVIqrhpNMRLAYVAQHAF 723
                 55778889999999***************************************9766664223331111345788888876 PP

  == domain 3    score: 4.9 bits;  conditional E-value: 0.012
   TIGR00957 760 nlsggqkqrvslaravysdadiyllddplsavd 792
                  lsggqk +v la a++ +  + +ld+p   +d
  MMETSP1137-20121227|6705_1 880 ALSGGQKVKVVLAAAMWMEPHVIILDEPTNFLD 912
                 69*************************987766 PP

>> TIGR00630  uvra: excinuclease ABC subunit A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.0      0.53        34     623     659 ..     421     457 ..     410     472 .. 0.81
   2 !   11.8   0.0   0.00016      0.01     813     891 ..     502     577 ..     491     588 .. 0.85
   3 !   12.5   0.1   9.9e-05    0.0063     619     653 ..     658     692 ..     641     707 .. 0.88
   4 ?    1.1   0.0      0.28        18     826     889 ..     878     935 ..     833     939 .. 0.73

  Alignments for each domain:
  == domain 1    score: 0.2 bits;  conditional E-value: 0.53
   TIGR00630 623 lkdidvsiplglltvitGvsgsGkstLindiLvkale 659
                 l++  ++++ g+   + G+ g+GkstL+  i +  +e
  MMETSP1137-20121227|6705_1 421 LHNTRLKLKRGKCYGLIGPNGAGKSTLMRSIAADLVE 457
                 677788888888899999999*****99998776665 PP

  == domain 2    score: 11.8 bits;  conditional E-value: 0.00016
   TIGR00630 813 vdvGLgYiklGqpattLsGGeaqrvkLakeLskrstgktlyilDePttGLhfdDikkLlevlqrlvdkGntvvviehnl 891
                 ++vG+    +  p+ +LsGG   r+ L++ + k+     l +lDePt  + ++ ++ L + +q l +k  + +++ h+ 
  MMETSP1137-20121227|6705_1 502 TSVGFASDLMHGPVGALSGGWRMRLALSRAMLKE---PELLLLDEPTNHVDVHGVAWLTKYIQDLSNKSISSMIVSHDT 577
                 5666666666678899*****9999999988875...679*******************************99999974 PP

  == domain 3    score: 12.5 bits;  conditional E-value: 9.9e-05
   TIGR00630 619 kennlkdidvsiplglltvitGvsgsGkstLindi 653
                 ++n l++i+v++ +   +++ Gv g+Gkst+i+ +
  MMETSP1137-20121227|6705_1 658 EQNTLNNISVQVSMASRVAVIGVNGAGKSTMIKLM 692
                 6789***************************9865 PP

  == domain 4    score: 1.1 bits;  conditional E-value: 0.28
   TIGR00630 826 attLsGGeaqrvkLakeLskrstgktlyilDePttGLhfdDikkLlevlqrlvdkGntvvvieh 889
                   +LsGG   +v La+ +        + ilDePt  L  d +  L   +++++     v++i h
  MMETSP1137-20121227|6705_1 878 IGALSGGQKVKVVLAAAMWM---EPHVIILDEPTNFLDRDSLGALACAVKNFA---GGVIIISH 935
                 34799999988889887764...5678999***99988887777766665553...24555555 PP

>> TIGR00750  lao: LAO/AO transport system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   0.0     0.019       1.2      31      59 ..     428     456 ..     414     467 .. 0.82
   2 !   15.1   0.0   3.1e-05     0.002      10      67 ..     647     706 ..     627     714 .. 0.81

  Alignments for each domain:
  == domain 1    score: 6.0 bits;  conditional E-value: 0.019
   TIGR00750  31 tGrahvvGltGvPGaGkstlveklieelr 59 
                   r +  Gl G  GaGkstl+  ++ +l+
  MMETSP1137-20121227|6705_1 428 LKRGKCYGLIGPNGAGKSTLMRSIAADLV 456
                 5567788**************99988775 PP

  == domain 2    score: 15.1 bits;  conditional E-value: 3.1e-05
   TIGR00750  10 itlveneepe.akellkrilpktGrahvvGltGvPGaGkstlvekliee.lrrrGlkvav 67 
                 +t v  ++p   ++ l++i+ +   a +v + Gv GaGkst+++ ++ e l ++G    v
  MMETSP1137-20121227|6705_1 647 MTDVSFRYPTrEQNTLNNISVQVSMASRVAVIGVNGAGKSTMIKLMVGElLPNEGEGSPV 706
                 677777777657889****************************97765405566765555 PP

>> TIGR00956  3a01205: pleiotropic drug resistance family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.4   0.0    0.0022      0.14     771     814 ..     413     456 ..     376     468 .. 0.81
   2 ?    3.4   0.0     0.037       2.3     903     952 ..     519     567 ..     506     605 .. 0.83
   3 ?    3.9   0.0     0.025       1.6     756     809 ..     641     692 ..     584     697 .. 0.76
   4 ?    0.9   0.0       0.2        13     211     947 ..     882     925 ..     875     935 .. 0.59

  Alignments for each domain:
  == domain 1    score: 7.4 bits;  conditional E-value: 0.0022
   TIGR00956 771 ikkekrvlLdevdGwvkPGkltALmGasGAGkttLlnvLaeRvt 814
                 +  ++rvlL++    +k Gk   L+G  GAGk tL+  +a  + 
  MMETSP1137-20121227|6705_1 413 LAYGNRVLLHNTRLKLKRGKCYGLIGPNGAGKSTLMRSIAADLV 456
                 55678999999999999999999999999999999998886555 PP

  == domain 2    score: 3.4 bits;  conditional E-value: 0.037
   TIGR00956 903 nveqRkrltigveLvAkPklllFlDePtsGLDsqtawsivkllrkladaG 952
                 +   R rl+++  +  +P  ll lDePt  +D +  + + k ++ l+++ 
  MMETSP1137-20121227|6705_1 519 SGGWRMRLALSRAMLKEP-ELLLLDEPTNHVDVHGVAWLTKYIQDLSNKS 567
                 555688888888899999.5667999999999999988999999999875 PP

  == domain 3    score: 3.9 bits;  conditional E-value: 0.025
   TIGR00956 756 geeifewrdltyevkikkekrvlLdevdGwvkPGkltALmGasGAGkttLlnvL 809
                 ++++ ++ d+++  + +  +++ L++++  v   +  A++G+ GAGk t++  +
  MMETSP1137-20121227|6705_1 641 TKALIKMTDVSFRYPTR--EQNTLNNISVQVSMASRVAVIGVNGAGKSTMIKLM 692
                 37788888888876655..56789*************************98765 PP

  == domain 4    score: 0.9 bits;  conditional E-value: 0.2
   TIGR00956 211 sGGerkRvsiaevlvakakiqcwDnatrGLDsatalefvkalktsaeilkatalvaiyqasqdayelFdkvvvlyeGkqiyfGkadkakeyFekmGfkCpdRqttadFLtsltspkereikkgyekkvprtakefekywrnspeyaelekeideylerveeekekeaikesavakkskrtrkkskytvsfsqqvkyilaRellrlkgdasvtlikvvgniimalilssvfynlekntsdfyvrggalffallfnafsslleiaslyearpivekhrkyalyhPsadalasilselPvkliesvvfniilyflvnlrreagrFffylLilflatlvmshlFrsigavtktlseAmtlaallllalslytgfviprkeilkWskWiayvnPlayafesllvnefharefecsqlvPsgsgyenlsseekvCalvgaepgedyvdgdeylklsfdyknkhkWrnlgiilafvvffvvvvilllefnkgakkkgeilvfkkgelkkakkkeeeseskkndieagevlkstdltdeseevneeveeekesgeeifewrdltyevkikkekrvlLdevdGwvkPGkltALmGasGAGkttLlnvLaeRvttGvitegdrlvngrkldssFqRsiGYvqqqDlHletstvreaLrfsAylRqpkevskkekneyveevikllelesyadAvvGvpGeGLnveqRkrltigveLvAkPklllFlDePtsGLDsqtawsivkllrk 947
                 sGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    q+ ++ ++  +  +P  ++ lDePt  LD  +  ++ + +++
  MMETSP1137-20121227|6705_1 882 SGG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------QKVKVVLAAAMWMEP-HVIILDEPTNFLDRDSLGALACAVKN 925
                 444....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................444555555555556.44556666666666665555555555 PP

>> TIGR01526  nadR_NMN_Atrans: nicotinamide-nucleotide adenylyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.0   0.0    0.0013      0.08     163     229 ..     432     499 ..     423     506 .. 0.86
   2 ?    4.8   0.0     0.046         3     151     181 ..     661     691 ..     613     698 .. 0.76

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 0.0013
   TIGR01526 163 ktvailGgestGkstLvrklaeklnttsaeeyareyeeaklggde.alkysdyakivlGqadaedaav 229
                 k   ++G++ +GkstL+r +a+ l   + +e    y+e      + ++   d+ ++ l +++ ed a+
  MMETSP1137-20121227|6705_1 432 KCYGLIGPNGAGKSTLMRSIAADLVEGFPKEIRSVYVECDVSATHaEMGCIDFVHMDLPDKSKEDIAA 499
                 566789********************************998887779999999999888777777665 PP

  == domain 2    score: 4.8 bits;  conditional E-value: 0.046
   TIGR01526 151 khiprevrpfFvktvailGgestGkstLvrk 181
                 +  +  v+   + +va++G + +Gkst+++ 
  MMETSP1137-20121227|6705_1 661 TLNNISVQVSMASRVAVIGVNGAGKSTMIKL 691
                 4555678888999**************9985 PP

>> TIGR00606  rad50: rad50
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0      0.69        44      33      47 ..     436     450 ..     432     466 .. 0.85
   2 !    6.6   0.0    0.0043      0.28    1212    1305 ..     524     613 ..     520     617 .. 0.83
   3 !    6.1   0.0    0.0062       0.4    1201    1249 ..     882     924 ..     852     940 .. 0.81
   4 ?   -4.1   3.5       7.3   4.7e+02     908     953 ..     975    1020 ..     961    1035 .. 0.63

  Alignments for each domain:
  == domain 1    score: -0.7 bits;  conditional E-value: 0.69
   TIGR00606  33 lvGPnGaGkttiiea 47 
                 l+GPnGaGk t++ +
  MMETSP1137-20121227|6705_1 436 LIGPNGAGKSTLMRS 450
                 78*********9865 PP

  == domain 2    score: 6.6 bits;  conditional E-value: 0.0043
   TIGR00606 1212 irlalaevfclnCgiialdePttnldrekieslaialveiiksrsrqrdlqllvithdedlvellgrse.yvekiyrlkkdidqiselvkrsvss 1305
                  +rlal+  +  +  ++ ldePt  +d + +      l + i++ s+ + +  +++ hd  +++ +++ + + ek  +lk    ++se vk  +++
  MMETSP1137-20121227|6705_1  524 MRLALSRAMLKEPELLLLDEPTNHVDVHGVAW----LTKYIQDLSN-KSISSMIVSHDTAFLDAVAQDCvHYEKNRKLKVYKGNLSEFVKLVPEA 613 
                  69********************9999666655....5556666554.56777889***********998357999999999999***99988765 PP

  == domain 3    score: 6.1 bits;  conditional E-value: 0.0062
   TIGR00606 1201 saGqkvlasllirlalaevfclnCgiialdePttnldrekieslaialv 1249
                  s Gqkv      ++ la  + ++  +i ldePt  ldr+ + +la a+ 
  MMETSP1137-20121227|6705_1  882 SGGQKV------KVVLAAAMWMEPHVIILDEPTNFLDRDSLGALACAVK 924 
                  555554......788999999999*********************9875 PP

  == domain 4    score: -4.1 bits;  conditional E-value: 7.3
   TIGR00606  908 keevsPlettlekllqekeeliskkeeskkiaedkvndikekvkni 953 
                  ke       t+e+      + i++k++ kki + +++++k++v ++
  MMETSP1137-20121227|6705_1  975 KEAAKSASLTKEDKFDAFGNKIEEKKQAKKIPKSELKKLKKRVAEM 1020
                  3333444445555555555667777777777777777777776543 PP

>> TIGR02729  Obg_CgtA: Obg family GTPase CgtA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   0.0     0.028       1.8     150     179 ..     424     453 ..     413     456 .. 0.82
   2 !    7.3   0.0    0.0072      0.46     147     176 ..     662     691 ..     652     695 .. 0.87

  Alignments for each domain:
  == domain 1    score: 5.3 bits;  conditional E-value: 0.028
   TIGR02729 150 lkleLklladvglvGlpnaGkStllsavsa 179
                  +l+Lk     gl+G   aGkStl+++++a
  MMETSP1137-20121227|6705_1 424 TRLKLKRGKCYGLIGPNGAGKSTLMRSIAA 453
                 56777777778***************9975 PP

  == domain 2    score: 7.3 bits;  conditional E-value: 0.0072
   TIGR02729 147 erelkleLklladvglvGlpnaGkStllsa 176
                  +++++++ + + v+++G+  aGkSt+++ 
  MMETSP1137-20121227|6705_1 662 LNNISVQVSMASRVAVIGVNGAGKSTMIKL 691
                 56899999999****************986 PP

>> TIGR02322  phosphon_PhnN: phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.6   0.0    0.0048      0.31       4      28 ..     434     458 ..     431     494 .. 0.68
   2 ?    2.6   0.0      0.32        21       4      21 ..     675     692 ..     672     703 .. 0.86

  Alignments for each domain:
  == domain 1    score: 8.6 bits;  conditional E-value: 0.0048
   TIGR02322   4 ilvvGpsGaGKDtlldlararlade 28 
                   ++Gp GaGK tl+   +a l + 
  MMETSP1137-20121227|6705_1 434 YGLIGPNGAGKSTLMRSIAADLVEG 458
                 568************9999888776 PP

  == domain 2    score: 2.6 bits;  conditional E-value: 0.32
   TIGR02322   4 ilvvGpsGaGKDtlldla 21 
                 ++v+G  GaGK t+++l 
  MMETSP1137-20121227|6705_1 675 VAVIGVNGAGKSTMIKLM 692
                 78************9865 PP

>> TIGR00929  VirB4_CagE: type IV secretion/conjugal transfer ATPase, VirB4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   0.0    0.0089      0.57     442     461 ..     436     455 ..     422     476 .. 0.88
   2 ?    2.9   0.0     0.085       5.4     439     458 ..     674     693 ..     656     698 .. 0.83

  Alignments for each domain:
  == domain 1    score: 6.1 bits;  conditional E-value: 0.0089
   TIGR00929 442 IfGptgsGKTvllnfllaql 461
                 ++Gp+g+GK++l+  ++a l
  MMETSP1137-20121227|6705_1 436 LIGPNGAGKSTLMRSIAADL 455
                 69************999976 PP

  == domain 2    score: 2.9 bits;  conditional E-value: 0.085
   TIGR00929 439 hTlIfGptgsGKTvllnfll 458
                  ++++G +g+GK++++++++
  MMETSP1137-20121227|6705_1 674 RVAVIGVNGAGKSTMIKLMV 693
                 689************99865 PP

>> TIGR03574  selen_PSTK: L-seryl-tRNA(Sec) kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   0.0     0.018       1.1      83     111 ..      51      79 ..       9      91 .. 0.86
   2 ?    3.1   0.0      0.18        12       4      37 ..     436     472 ..     435     476 .. 0.87

  Alignments for each domain:
  == domain 1    score: 6.4 bits;  conditional E-value: 0.018
   TIGR03574  83 rrdliniakerdknyiiiylkapldvllk 111
                  rdl+n ake+ + +  +yl + +d+++ 
  MMETSP1137-20121227|6705_1  51 TRDLANWAKETGVHWPEVYLITLFDTIMA 79 
                 69***********************9986 PP

  == domain 2    score: 3.1 bits;  conditional E-value: 0.18
   TIGR03574   4 ltGlPgvGkstfskelakklse...knidviilgtdl 37 
                 l G+ g+Gkst+ +++a  l e   k+i+ + +++d+
  MMETSP1137-20121227|6705_1 436 LIGPNGAGKSTLMRSIAADLVEgfpKEIRSVYVECDV 472
                 6799****************98666889999999886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1041 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       384  (0.0936129); expected 82.0 (0.02)
Passed bias filter:                      213  (0.0519259); expected 82.0 (0.02)
Passed Vit filter:                        91  (0.0221843); expected 4.1 (0.001)
Passed Fwd filter:                        64  (0.0156021); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              64  [number of targets reported over threshold]
# CPU time: 2.14u 0.20s 00:00:02.34 Elapsed: 00:00:01.71
# Mc/sec: 803.51
//
Query:       MMETSP1137-20121227|6706_1  [L=403]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (403 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        85  (0.0207216); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.16s 00:00:00.46 Elapsed: 00:00:00.36
# Mc/sec: 1477.54
//
Query:       MMETSP1137-20121227|6707_1  [L=357]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (357 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        89  (0.0216967); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.16s 00:00:00.42 Elapsed: 00:00:00.54
# Mc/sec: 872.59
//
Query:       MMETSP1137-20121227|6708_1  [L=160]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (160 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       142  (0.0346173); expected 82.0 (0.02)
Passed bias filter:                      104  (0.0253535); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.12s 00:00:00.29 Elapsed: 00:00:00.31
# Mc/sec: 681.23
//
Query:       MMETSP1137-20121227|6709_1  [L=359]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.5e-07   28.7   2.9      0.028   11.4   0.0    3.3  3  TIGR01186 proV: glycine betaine/L-proline transport ATP binding subunit
    5.9e-05   19.9   2.3      0.011   12.5   0.4    2.2  2  TIGR01302 IMP_dehydrog: inosine-5'-monophosphate dehydrogenase
      0.004   13.8   0.5       0.95    6.0   0.0    2.3  2  TIGR00400 mgtE: magnesium transporter
  ------ inclusion threshold ------
       0.01   13.7   0.0      0.037   11.9   0.0    1.8  2  TIGR03585 PseH: pseudaminic acid biosynthesis N-acetyl transferase


Domain annotation for each model (and alignments):
>> TIGR01186  proV: glycine betaine/L-proline transport ATP binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.4   0.0   2.7e-05     0.028     313     360 ..     141     189 ..     128     192 .. 0.89
   2 !    8.8   0.1   0.00016      0.17     312     350 ..     214     253 ..     207     269 .. 0.63
   3 !    7.1   0.1   0.00055      0.56     308     358 ..     294     345 ..     261     351 .. 0.66

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 2.7e-05
   TIGR01186 313 ltvdeqtllsellskvlkagikvpvvd.edqrlvGivsraslvdaldds 360
                   vde+t+l ++l+ ++  + +vpvv  e  r+v i+s++++v  ++ s
  MMETSP1137-20121227|6709_1 141 QPVDENTPLMDVLRLLSGSARRVPVVSsETGRVVKIISQSAVVXEVYAS 189
                 569**********************9637789***********999876 PP

  == domain 2    score: 8.8 bits;  conditional E-value: 0.00016
   TIGR01186 312 iltvdeqtllsellskvlkagik.vpvvdedqrlvGivsr 350
                 ++tv++ t+++  ++ + k++++ v vvde+ ++   vs 
  MMETSP1137-20121227|6709_1 214 VMTVRDSTPVKTAFQLMVKEDVSaVGVVDEEDKIFSCVST 253
                 5566666666666666666666556666666666555543 PP

  == domain 3    score: 7.1 bits;  conditional E-value: 0.00055
   TIGR01186 308 lkediltvdeqtllsellskvlkagik.vpvvdedqrlvGivsraslvdald 358
                  +  + +v  +t+l  ++ k++ ++++ + ++d++++ vG++s + +++ l 
  MMETSP1137-20121227|6709_1 294 SHAPVAVVGLDTPLLTVIGKLAATKMHrIFLIDQQNKAVGVISVSDIISLLM 345
                 4555555666666666666666666655666666666666666666655554 PP

>> TIGR01302  IMP_dehydrog: inosine-5'-monophosphate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.5   0.4   1.1e-05     0.011     151     202 ..     211     262 ..     142     305 .. 0.74
   2 !    7.4   0.0   0.00036      0.37     161     198 ..     305     342 ..     275     354 .. 0.81

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 1.1e-05
   TIGR01302 151 keevitvkeeidleeaeevleekkieklpvvdkegelvglvtvkdiekakef 202
                   +v+tv+ ++ +++a +++ ++ ++ + vvd+e+++ + v++kdi    + 
  MMETSP1137-20121227|6709_1 211 MXKVMTVRDSTPVKTAFQLMVKEDVSAVGVVDEEDKIFSCVSTKDIRLMPSI 262
                 4689999**************************************9765555 PP

  == domain 2    score: 7.4 bits;  conditional E-value: 0.00036
   TIGR01302 161 idleeaeevleekkieklpvvdkegelvglvtvkdiek 198
                 + l ++   l   k++++ ++d++++ vg+++v+di  
  MMETSP1137-20121227|6709_1 305 TPLLTVIGKLAATKMHRIFLIDQQNKAVGVISVSDIIS 342
                 5555667789999**********************975 PP

>> TIGR00400  mgtE: magnesium transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.7   0.1    0.0011       1.2     207     247 ..     216     256 ..     207     267 .. 0.71
   2 !    6.0   0.0   0.00092      0.95     229     255 ..     322     348 ..     311     352 .. 0.87

  Alignments for each domain:
  == domain 1    score: 5.7 bits;  conditional E-value: 0.0011
   TIGR00400 207 svdavqdqeevarliqkydflavPvvdeenrlvGivtvddi 247
                  v   +  +   +l+ k d+ av vvdee+++   v   di
  MMETSP1137-20121227|6709_1 216 TVRDSTPVKTAFQLMVKEDVSAVGVVDEEDKIFSCVSTKDI 256
                 33333333444466679999999999999999999888887 PP

  == domain 2    score: 6.0 bits;  conditional E-value: 0.00092
   TIGR00400 229 vPvvdeenrlvGivtvddiidvveeea 255
                 + ++d++n+ vG++ v dii ++ ++a
  MMETSP1137-20121227|6709_1 322 IFLIDQQNKAVGVISVSDIISLLMQQA 348
                 66799***************9998775 PP

>> TIGR03585  PseH: pseudaminic acid biosynthesis N-acetyl transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0      0.82   8.4e+02      58      75 ..      70      87 ..      66      94 .. 0.79
   2 ?   11.9   0.0   3.6e-05     0.037      42      74 ..     311     343 ..     305     358 .. 0.81

  Alignments for each domain:
  == domain 1    score: -2.2 bits;  conditional E-value: 0.82
   TIGR03585 58 qesepiGvisltdinlvh 75
                + ++++G+ ++td+  +h
  MMETSP1137-20121227|6709_1 70 KAKQYLGFFDVTDVLSLH 87
                568999*****9997666 PP

  == domain 2    score: 11.9 bits;  conditional E-value: 3.6e-05
   TIGR03585  42 ieklkqdaekryflveqesepiGvisltdinlv 74 
                 i kl   + +r fl+ q+++ +Gvis++di  +
  MMETSP1137-20121227|6709_1 311 IGKLAATKMHRIFLIDQQNKAVGVISVSDIISL 343
                 5678888999*******************9654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (359 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       112  (0.0273038); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.32u 0.14s 00:00:00.46 Elapsed: 00:00:00.43
# Mc/sec: 1101.96
//
Query:       MMETSP1137-20121227|6710_1  [L=320]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (320 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       119  (0.0290102); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.19s 00:00:00.47 Elapsed: 00:00:00.60
# Mc/sec: 703.94
//
Query:       MMETSP1137-20121227|6711_1  [L=332]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (332 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       137  (0.0333983); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.18s 00:00:00.47 Elapsed: 00:00:00.38
# Mc/sec: 1153.17
//
Query:       MMETSP1137-20121227|6712_1  [L=48]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (48 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       168  (0.0409556); expected 82.0 (0.02)
Passed bias filter:                      159  (0.0387616); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.31
# Mc/sec: 204.37
//
Query:       MMETSP1137-20121227|6713_1  [L=402]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (402 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       151  (0.0368113); expected 82.0 (0.02)
Passed bias filter:                      117  (0.0285227); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.17s 00:00:00.45 Elapsed: 00:00:00.33
# Mc/sec: 1607.87
//
Query:       MMETSP1137-20121227|6714_1  [L=498]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (498 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       397  (0.0967821); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.15s 00:00:00.55 Elapsed: 00:00:00.56
# Mc/sec: 1153.17
//
Query:       MMETSP1137-20121227|6715_1  [L=497]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.4e-20   69.3   0.0    7.8e-20   68.8   0.0    1.1  1  TIGR02160 PA_CoA_Oxy5: phenylacetate-CoA oxygenase/reductase, PaaK subunit
    2.2e-11   41.1   0.0    3.2e-11   40.6   0.0    1.1  1  TIGR01941 nqrF: NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit


Domain annotation for each model (and alignments):
>> TIGR02160  PA_CoA_Oxy5: phenylacetate-CoA oxygenase/reductase, PaaK subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.8   0.0   3.8e-23   7.8e-20      18     243 ..     207     448 ..     192     456 .. 0.79

  Alignments for each domain:
  == domain 1    score: 68.8 bits;  conditional E-value: 3.8e-23
   TIGR02160  18 eisfevPeelaedyrfepGqhltlkaeldGeelr..rsysicdava....dgeirvavkkieGGlfstwaneeiraGdtlevmaPqGrftskldaer.....akhyvavaaGsGitPilaivktvlaaepkstftlvyanrrsasvmfaeeladl...kdk...ypqrfal.....lhvlsreereaellsGrldgeklkalldslievdevdeaflcGPaalvddaedalkalGvdsekvhlelftt 243
                 e +fe  +  +   r++pGq++tl ++  G e r  r y++ + ++    +++  +avk+ + G +s+++++++  Gd + +  P G f+++  ++      +   v+++aG GitP ++++ + l + ++  +  ++a +++a+  f+e l  l    dk   + +r+       + v s e+     ++Gr+d e++k ll      d+   +f+cGP+  + ++ ++l + Gv+ +++ +e f  
  MMETSP1137-20121227|6715_1 207 EFTFEAANG-KRVSRYTPGQYITLWVKAPGWEYRqpRHYTLLQETEwkegQSTYTIAVKRRDDGTMSKYLHDDLLLGDRIYLSPPFGDFHMNHASQMwindsRAPVVLLSAGVGITPTMSMLSS-LRKGQRP-VIWLHAAKSGAEHPFREYLRGLahmMDKehaFTRRVWYetpreADVKSSENTGMYHFEGRMDLEQVKDLLP---LHDKHAMFFFCGPKPWMVNVAKQLCSFGVKRSNIEFESFGP 448
                 555555433.44569*****************997789**998754333367899***********************************99887767776677899*************9976.5555554.6677999**********987662223332113444432222225688999999999*******99998865...46888899******************************975 PP

>> TIGR01941  nqrF: NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.6   0.0   1.6e-14   3.2e-11     239     404 ..     268     447 ..     258     448 .. 0.80

  Alignments for each domain:
  == domain 1    score: 40.6 bits;  conditional E-value: 1.6e-14
   TIGR01941 239 pGkmssyif.slkpGdkvtvsGpfGeffv........kdtdaelvfigGGaGmaplrshildllkrlkskrkisfwyGarskrevfyeedfdeleaend...nfkyhvalsdplpednwtG.ytgfih..nvlyenylkdhdaped..iefymcGpplmnaaviklledlGverenillddfG 404
                  G+ms y++ +l  Gd++ +s pfG+f++        +d+ a++v +  G G++p+ s  l  l+  k +r + + + a+s  e  ++e  + l+   d    f+  v    p+  d  +   tg+ h    +  +++kd+    d    f+ cGp      v k l ++Gv+r+ni ++ fG
  MMETSP1137-20121227|6715_1 268 DGTMSKYLHdDLLLGDRIYLSPPFGDFHMnhasqmwiNDSRAPVVLLSAGVGITPTMSM-LSSLR--KGQRPVIWLHAAKSGAEHPFREYLRGLAHMMDkehAFTRRVWYETPREADVKSSeNTGMYHfeGRMDLEQVKDLLPLHDkhAMFFFCGPKPWMVNVAKQLCSFGVKRSNIEFESFG 447
                 699*****94599**************863333222268999*************9885.45554..6889999999********99999988876554212799999******999877635666552235777889998765552268*******************************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (497 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        70  (0.0170648); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.33u 0.14s 00:00:00.47 Elapsed: 00:00:00.47
# Mc/sec: 1395.71
//
Query:       MMETSP1137-20121227|6716_1  [L=1073]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
          0 1156.2   0.0          0 1155.8   0.0    1.0  1  TIGR02414 pepN_proteo: aminopeptidase N
    8.7e-40  134.6   1.5    8.7e-40  134.6   1.0    1.5  2  TIGR02412 pepN_strep_liv: aminopeptidase N
    1.1e-25   88.2   0.0    3.1e-25   86.8   0.0    1.6  2  TIGR02411 leuko_A4_hydro: leukotriene A-4 hydrolase/aminopeptidase


Domain annotation for each model (and alignments):
>> TIGR02414  pepN_proteo: aminopeptidase N
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ! 1155.8   0.0         0         0       1     836 [.      81     922 ..      81     935 .. 0.96

  Alignments for each domain:
  == domain 1    score: 1155.8 bits;  conditional E-value: 0
   TIGR02414   1 DYkppefliekvkLefdleeeetlvraklkverkke.........eeakaelvldGeelkllsikldgkklaed.eyqlddesLtiasvpeekftleieteikPeentsLeGLYksgglfctqCEaeGFRrityflDRPdvlskytvtieAdkkkypvlLsnGnkieseeledgrhlaeweDPfkkPsYLFAlvAGdlkvledkfitksgrevalevyveekkedkaefalesLkkamkwDEevfglEyDLdifmivAvddFnmGAmEnkgLniFnsklvLAdpetatDadyeriesviaHEYFHnwtGnRvtcRDWFqlslkEGltvfRdqefsadmtsravkRiedvkllravqFaEDagplaHPvrPesyveinnfytatvYekGaEviRmlktllGeeafrkgmdlYfkrhDGqavtvedfvaaledasgkdleqfkrWysqaGtPelevkeeydaekkeytltlkqstpptpgqkekkplhiPlavglldaegkklelslegeareteevlelkeaeetfvfegikekpvpsllrgFsAPvkleyelseedlllLlkkdsdafaRweaaqklarkellklvaeaqkg...eelkveekliealkklledealdaafkalllalPseaelaelvekvdpealaaareflrkeiaeqladelaklykelqeeeees..veaaaagrRalrnlalsylakaedaeilelaleqfkeadnmtdalaalsvlvkaeskerekkealaefyekwk..ddplvldkwfavqatstskdvleevkkllkhpafdlknPnkvraligaFananlvrfhdasgkgYrfladkilkidklnPqvaarllealkrwrkle 836
                 DY+p+++++e+v+L+f+++ eet+v+++l++  ++e         +e++++l l+Ge+l+l+s++ldg +l e+ +y++d+e+Lt+ + p++ ftl+++++ikP+ nt+L+GLY+s+g++ctqCEaeGFRrityf+DRPdv+skytv++eAdk+kypvlLsnGn+i+++e e+grh+ae+eDPf+kPsYLFAlvAGdl+ +ed+f+t+sg +v+l++++e+++ d++++a++sLk +mkwDEe++g+EyDLd++ ivAv+dFnmGAmEnkgLn+Fn+++vLA+p+tatDadyer+++v+aHEYFHnw+GnRvtcRDWFql+lkEGltvfRdq+fsadmts+avkRiedv+++r++qF  D gp+aHP+rPesy++++nfyt+tvY+kGaEviRm++tllG+++frkgmdlYf+rhDG+avt++df aa++da+g dl+qf+rWy qaGtP++++k eyda++k+ytltl+q+t++tpgq +k+p++iP++ +ll ++gk +e           + l l       v e +  +  psllrgFsAPv+l++e s++ l++L+++++d+f+Rw+a+q+la+++ll+l+++ ++g   ++l++ + +++a++++l+d  ld+++k++ l+lP+ ++l + ++ vdp+al  a ++ rk++a+ l+++la+ly++l   + ++  v+++++grR lrn++l ylak  d+e+++l+ +qf++a+ mt+++aa  +l +   ker   ++l +fye+ k  +++lv +kwfa+qa+++s+d+l+ vk l++h+a+d++nPn+vra++++Fa+an+ +fh+a+g+gY+f+ad +++idk+nPqvaa  ++ ++ +++++
  MMETSP1137-20121227|6716_1  81 DYRPYPYIVESVHLDFNVQAEETIVKSSLRLVPRSEgksgtkrerDEEGTKLELNGEDLTLKSLELDGTALVEGtDYTVDAEFLTVLKPPNSPFTLTSVVSIKPQLNTQLSGLYASSGNLCTQCEAEGFRRITYFPDRPDVMSKYTVRVEADKAKYPVLLSNGNEIAKGEAEGGRHWAEFEDPFRKPSYLFALVAGDLAGIEDSFVTMSGNKVRLAIWSEHENIDQLDWAMQSLKDSMKWDEETYGREYDLDVYHIVAVNDFNMGAMENKGLNVFNTACVLAKPSTATDADYERVQGVVAHEYFHNWSGNRVTCRDWFQLTLKEGLTVFRDQHFSADMTSEAVKRIEDVRIMRSAQFLQDGGPMAHPIRPESYIAMDNFYTVTVYNKGAEVIRMYRTLLGADGFRKGMDLYFERHDGEAVTCDDFRAAMADANGVDLTQFERWYTQAGTPTVSAKGEYDAAAKKYTLTLSQKTAATPGQPTKEPFFIPVQTALLLEDGKLHE---------PXKXLXLXXXXXXXVXEXVXXAXXPSLLRGFSAPVRLQIERSDATLAFLASNEDDPFNRWDASQQLATRVLLDLASKISSGtspDDLTLPPSFVDAFRATLTDGGLDPSLKSYSLTLPDYTTLSQEMSPVDPDALCGALKTARKQLASTLRADLAALYDKLAPPAGQKfeVSPESVGRRRLRNCCLGYLAKLADDEAKALCVAQFDAATCMTESIAAAVALSSLPGKER--DQVLGTFYERAKanKEALVXNKWFALQASAESPDALQVVKGLMEHEAYDATNPNRVRAVVQTFASANPGAFHAADGSGYKFIADMVIDIDKKNPQVAAAAVQRFRPVAQIQ 922
                 9****************************9865543111111111344567********************9988***************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************4333.........35789********************************************************************99999987666899**************************************************************************99877665599*************************************************99999955..56******987622679************************************************************************************9999887765 PP

>> TIGR02412  pepN_strep_liv: aminopeptidase N
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  134.6   1.0   6.3e-43   8.7e-40     120     456 ..     200     541 ..     197     563 .. 0.89
   2 ?   -2.4   0.0      0.17   2.3e+02     709     820 ..     838     951 ..     806     958 .. 0.66

  Alignments for each domain:
  == domain 1    score: 134.6 bits;  conditional E-value: 6.3e-43
   TIGR02412 120 lytqfevadarrvfavFdqPDlKAsfelsvkaPed.WtV.isnsteeevtteeadrvw.efeetPklstYltavaaGPyvsvq.....keaesiplgiyaRkSlaeyldada.ifditrqgldfyeekFgipyPfkkYDqvfvPefnaGAmENaGlVtfaeefvfr..aevtdaeketrakvilHElAHmWFGdlVtmrWWddlWLnEsFAeymgalasaeateytdaWttfavqrKawaYeaDqlpttHPivadvadledalsnfDgit.YaKGASvLkqLvayvGeeaFlagvnayfkryafgnatLdDlidsLakasgrdlsaWskaWLetaGvdvlkaelevddd 456
                 l tq+e++  rr+    d PD+  ++++ v a +  + V +sn++e  + ++e  r w efe+  +  +Yl+a+ aG    ++       ++++ l i++ +   e +d+ +  ++  + ++++ ee++g  y  + Y  v v +fn+GAmEN Gl  f+   v    +++tda++e+   v++HE  H W G+ Vt r W +l L+E    +  ++ sa+ t+      + +  +++  + +D  p++HPi+ +      a++nf ++t Y+KGA v++  ++++G + F++g++ yf+r+  +  t dD+  ++a+a g dl ++ + W   aG+ ++ a+ e d+ 
  MMETSP1137-20121227|6716_1 200 LCTQCEAEGFRRITYFPDRPDVMSKYTVRVEADKAkYPVlLSNGNEIAKGEAEGGRHWaEFEDPFRKPSYLFALVAGDLAGIEdsfvtMSGNKVRLAIWSEH---ENIDQLDwAMQSLKDSMKWDEETYGREYDLDVYHIVAVNDFNMGAMENKGLNVFNTACVLAkpSTATDADYERVQGVVAHEYFHNWSGNRVTCRDWFQLTLKEGLTVFRDQHFSADMTSEAVKRIEDVRIMRSAQFLQDGGPMAHPIRPE---SYIAMDNFYTVTvYNKGAEVIRMYRTLLGADGFRKGMDLYFERHDGEAVTCDDFRAAMADANGVDLTQF-ERWYTQAGTPTVSAKGEYDAA 541
                 569**********9999***************87525552799999999999999999568888899***************98887777888999998766...5555544368999******************************************996653247899***************************************************999888899999999**************964...4568999999988*****************************************************998.68**********998877764 PP

  == domain 2    score: -2.4 bits;  conditional E-value: 0.17
   TIGR02412 709 aaraarPdaaaKreaweklvtedalsnakvravieglvqpeqadllaayaery..fdd.ladvlkkrgiaiaqalsrglfPatavdadtlekadkvlasqkdasaalrrtlleer 820
                 +a a  Pda    +   +    da   + vrav++ +  ++     aa    y  ++d ++d++kk  +++a+a++++  P+ +++  +  +  +  + ++++ +al+  l++++
  MMETSP1137-20121227|6716_1 838 QASAESPDALQVVKGLMEHEAYDATNPNRVRAVVQTFASANPGAFHAADGSGYkfIADmVIDIDKK-NPQVAAAAVQRFRPVAQIQGGSQGADAEGARADQGLAQALQGHLRDRL 951
                 555555555444444444444555556678888888888887776666554432244415566666.778888888999999999887766655555566788888877777776 PP

>> TIGR02411  leuko_A4_hydro: leukotriene A-4 hydrolase/aminopeptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.8   0.0   2.3e-28   3.1e-25     126     465 ..     200     552 ..     188     562 .. 0.81
   2 ?   -2.5   0.0      0.24   3.3e+02     333     365 ..     683     716 ..     678     719 .. 0.76

  Alignments for each domain:
  == domain 1    score: 86.8 bits;  conditional E-value: 2.3e-28
   TIGR02411 126 lfsqcqaiharsllPcfdtPsvkstydakvesp...lavllsglrket....skdegkylfkqkvPiPayLvalasGdLas......apiGp..rssvysekvelekcqyefekdtekflkvaee.lifpyvWkkydllvlppsfPyGGmenPnl.tfatPtLiag.......drsnvd.viahelahsWsGnLvtnkswehfWLneGftvylerkivGaleGekerhfsaligwneLqesvktlkkdpeytkLvvdLkdndPddafssvPyekGsnlLfyleqllGGkaefdpflkaylkkfayksldtkqfkdvLyeyfkdkkkvdkldavdWetwlyseGlPpv..kPkfdttLadecykLadk 465
                 l +qc+a   r +    d P v s y+++ve +   ++vlls  ++ +    + +     f+ +   P+yL+al++GdLa       +  G+  r  ++se++++++ ++ ++  +++ +k  ee    +y    y + v ++ f  G men  l  f t  ++a+       d ++v+ v+ahe  h WsGn vt + w  + L eG tv+ +++    ++ e  +  + +     +  s + l++   +++ +   + +  d+ ++   y+kG +++++  +llG  + f   +  y++++  ++++ ++f+ ++ +       ++ +d   +e w+ + G P v  k ++d +    + +L++k
  MMETSP1137-20121227|6716_1 200 LCTQCEAEGFRRITYFPDRPDVMSKYTVRVEADkakYPVLLSNGNEIAkgeaEGGRHWAEFEDPFRKPSYLFALVAGDLAGiedsfvTMSGNkvRLAIWSEHENIDQLDWAMQ-SLKDSMKWDEEtYGREYDLDVYHI-VAVNDFNMGAMENKGLnVFNTACVLAKpstatdaDYERVQgVVAHEYFHNWSGNRVTCRDWFQLTLKEGLTVFRDQHFSADMTSEAVKRIEDV----RIMRSAQFLQDGGPMAHPIRPESYIAMDNFYTVTVYNKGAEVIRMYRTLLG-ADGFRKGMDLYFERHDGEAVTCDDFRAAMAD-------ANGVDLTQFERWYTQAGTPTVsaKGEYDAAAKKYTLTLSQK 552
                 5689*********9999*************998888*****97544331211444455678899999************8622222233465225689**************9.666666666551567899999986.67899********98845999999987333332233344359*******************************************99988776....4677899999999********9999********************999999.899***********************99754.......44556678999******999733456777766666666665 PP

  == domain 2    score: -2.5 bits;  conditional E-value: 0.24
   TIGR02411 333 igwneLqesvktlkkd.peytkLvvdLkdndPdd 365
                    + L+ s+k+ + + p+yt+L +++++ dPd 
  MMETSP1137-20121227|6716_1 683 LTDGGLDPSLKSYSLTlPDYTTLSQEMSPVDPDA 716
                 5556678888886655269*************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1073 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       128  (0.0312043); expected 82.0 (0.02)
Passed bias filter:                      101  (0.0246221); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.76u 0.16s 00:00:00.92 Elapsed: 00:00:00.73
# Mc/sec: 1940.06
//
Query:       MMETSP1137-20121227|6717_1  [L=403]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (403 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        73  (0.0177962); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.16s 00:00:00.44 Elapsed: 00:00:00.45
# Mc/sec: 1182.04
//
Query:       MMETSP1137-20121227|6718_1  [L=227]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (227 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        64  (0.0156021); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.15s 00:00:00.34 Elapsed: 00:00:00.34
# Mc/sec: 881.22
//
Query:       MMETSP1137-20121227|6719_1  [L=106]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0086   13.2   0.4     0.0094   13.1   0.3    1.1  1  TIGR03151 enACPred_II: putative enoyl-[acyl-carrier-protein] reductase II
  ------ inclusion threshold ------
      0.037   10.5   1.4      0.041   10.4   1.0    1.1  1  TIGR02231 TIGR02231: conserved hypothetical protein
        0.1    8.9   3.4       0.11    8.8   2.4    1.0  1  TIGR03545 TIGR03545: TIGR03545 family protein


Domain annotation for each model (and alignments):
>> TIGR03151  enACPred_II: putative enoyl-[acyl-carrier-protein] reductase II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.1   0.3   6.8e-06    0.0094     228     282 ..      32      86 ..       6      97 .. 0.80

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 6.8e-06
   TIGR03151 228 vrvlknkltrkyeelekegadleeleklgaGalrkavveGdveeGsvmaGqiagl 282
                 ++  + ++ + ++el++e+a le+ ek  +  ++ka+++G +++  +ma     +
  MMETSP1137-20121227|6719_1  32 IKEYNRQIKKSVRELDRERAALERQEKKLMTDIKKAARDGQMDSAKIMAKDLVCM 86 
                 5555677889999***********************************9877654 PP

>> TIGR02231  TIGR02231: conserved hypothetical protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   1.0     3e-05     0.041     126     178 ..      16      68 ..       3      84 .. 0.83

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 3e-05
   TIGR02231 126 kelkklldfaeseieklleedreveakirelekklselenelralltekeqrs 178
                 + + +l+  +++  e+++e +r++++  rel++  ++le + ++l+t+ ++  
  MMETSP1137-20121227|6719_1  16 NTMDALFGKQKTPAERIKEYNRQIKKSVRELDRERAALERQEKKLMTDIKKAA 68 
                 4567789999999********************************99666554 PP

>> TIGR03545  TIGR03545: TIGR03545 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   2.4   8.3e-05      0.11     218     291 ..      15      89 ..       7      96 .. 0.80

  Alignments for each domain:
  == domain 1    score: 8.8 bits;  conditional E-value: 8.3e-05
   TIGR03545 218 leeldkvkkeikadkqkiksakndlqkdlkqlkaqlaelkkapqkDlkrleekya.lkegdlknlaaalfgeeir 291
                  + +d+++   k+  ++ik+ + +++k++ +l+++ a+l+ + +k +  +++ ++  +   +k +a++l+   i 
  MMETSP1137-20121227|6719_1  15 RNTMDALFGKQKTPAERIKEYNRQIKKSVRELDRERAALERQEKKLMTDIKKAARdGQMDSAKIMAKDLVCMRID 89 
                 56789999999999***************************9999888888877744444447788888766665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (106 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       334  (0.0814237); expected 82.0 (0.02)
Passed bias filter:                      239  (0.0582643); expected 82.0 (0.02)
Passed Vit filter:                        23  (0.00560702); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.19u 0.19s 00:00:00.38 Elapsed: 00:00:00.46
# Mc/sec: 304.15
//
Query:       MMETSP1137-20121227|6720_1  [L=131]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (131 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       141  (0.0343735); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.16s 00:00:00.32 Elapsed: 00:00:00.68
# Mc/sec: 254.27
//
Query:       MMETSP1137-20121227|6721_1  [L=537]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (537 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       234  (0.0570453); expected 82.0 (0.02)
Passed bias filter:                      160  (0.0390054); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.18s 00:00:00.60 Elapsed: 00:00:00.48
# Mc/sec: 1476.63
//
Query:       MMETSP1137-20121227|6722_1  [L=428]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (428 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        79  (0.0192589); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.16s 00:00:00.44 Elapsed: 00:00:00.47
# Mc/sec: 1201.94
//
Query:       MMETSP1137-20121227|6724_1  [L=1066]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1066 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       124  (0.0302292); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.61u 0.14s 00:00:00.75 Elapsed: 00:00:00.65
# Mc/sec: 2164.62
//
Query:       MMETSP1137-20121227|6725_1  [L=747]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (747 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       106  (0.0258411); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.50u 0.17s 00:00:00.67 Elapsed: 00:00:00.74
# Mc/sec: 1332.38
//
Query:       MMETSP1137-20121227|6726_1  [L=429]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (429 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       117  (0.0285227); expected 82.0 (0.02)
Passed bias filter:                       98  (0.0238908); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.18s 00:00:00.49 Elapsed: 00:00:00.60
# Mc/sec: 943.72
//
Query:       MMETSP1137-20121227|6727_1  [L=469]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (469 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        65  (0.0158459); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.16s 00:00:00.48 Elapsed: 00:00:00.40
# Mc/sec: 1547.57
//
Query:       MMETSP1137-20121227|6728_1  [L=779]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (779 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       120  (0.029254); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.50u 0.15s 00:00:00.65 Elapsed: 00:00:00.46
# Mc/sec: 2235.21
//
Query:       MMETSP1137-20121227|6729_1  [L=919]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (919 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        74  (0.01804); expected 82.0 (0.02)
Passed bias filter:                       44  (0.0107265); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.53u 0.12s 00:00:00.65 Elapsed: 00:00:00.71
# Mc/sec: 1708.42
//
Query:       MMETSP1137-20121227|6730_1  [L=388]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (388 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        82  (0.0199902); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.15s 00:00:00.43 Elapsed: 00:00:00.76
# Mc/sec: 673.84
//
Query:       MMETSP1137-20121227|6731_1  [L=349]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00017   19.2   5.3     0.0023   15.5   1.6    2.2  2  TIGR00803 nst: UDP-galactose transporter


Domain annotation for each model (and alignments):
>> TIGR00803  nst: UDP-galactose transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.6   0.0    0.0012         5       5      51 ..      99     145 ..      96     163 .. 0.74
   2 !   15.5   1.6   5.5e-07    0.0023     112     221 ..     199     306 ..     194     307 .. 0.89

  Alignments for each domain:
  == domain 1    score: 4.6 bits;  conditional E-value: 0.0012
   TIGR00803   5 PiliilkqnnlvlvalgnllaagkqvTqlkilstalmtlgslvaslg 51 
                 P ++  k   +  v++g++ + gk  T  ++l  +l tlg+ v ++g
  MMETSP1137-20121227|6731_1  99 PTQVLGKSCKMLPVMVGGIVLGGKVFTVFQYLQVILVTLGVTVFNFG 145
                 55666666667777888888888888888888888888877666665 PP

  == domain 2    score: 15.5 bits;  conditional E-value: 5.5e-07
   TIGR00803 112 dtsfyvrnlqlplfgllvtfvvlllsdgslisnkgffigyttavwivvllnvvgglcvglvvkyadnttksivlalsiilsllls.vrlfdaklsltfalgvilvflatll 221
                 +++f+ ++    +  +l +f++ l+  ++++       ++++av i  l+++vg  ++   +    ++++s v+  ++i+s++ s +r + +kl+ +   g  lvf++ +l
  MMETSP1137-20121227|6731_1 199 ESMFWTNISGCLVAAVLGLFSGHLIGGFNFSMRHP---QVLSAVLIYSLASAVGQNFIYYTITQFNPLLLSTVTTTRKIFSTVYSvLRNPSNKLDALQWGGCALVFVGLFL 306
                 78899988777777777778888888888888888...8899999999999***********9999*******************99********************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (349 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       116  (0.0282789); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.27u 0.17s 00:00:00.44 Elapsed: 00:00:00.53
# Mc/sec: 869.14
//
Query:       MMETSP1137-20121227|6732_1  [L=108]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (108 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        51  (0.012433); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.16s 00:00:00.31 Elapsed: 00:00:00.37
# Mc/sec: 385.27
//
Query:       MMETSP1137-20121227|6733_1  [L=253]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (253 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       313  (0.0763042); expected 82.0 (0.02)
Passed bias filter:                      112  (0.0273038); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.16s 00:00:00.41 Elapsed: 00:00:00.44
# Mc/sec: 758.94
//
Query:       MMETSP1137-20121227|6734_1  [L=564]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (564 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       367  (0.0894686); expected 82.0 (0.02)
Passed bias filter:                      119  (0.0290102); expected 82.0 (0.02)
Passed Vit filter:                        19  (0.00463189); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.25s 00:00:00.67 Elapsed: 00:00:01.01
# Mc/sec: 737.05
//
Query:       MMETSP1137-20121227|6735_1  [L=1397]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1397 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       127  (0.0309605); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.63u 0.35s 00:00:00.98 Elapsed: 00:00:00.67
# Mc/sec: 2752.07
//
Query:       MMETSP1137-20121227|6736_1  [L=611]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (611 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       110  (0.0268162); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.16s 00:00:00.55 Elapsed: 00:00:00.74
# Mc/sec: 1089.80
//
Query:       MMETSP1137-20121227|6737_1  [L=328]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (328 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       149  (0.0363237); expected 82.0 (0.02)
Passed bias filter:                      106  (0.0258411); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.14s 00:00:00.40 Elapsed: 00:00:01.05
# Mc/sec: 412.31
//
Query:       MMETSP1137-20121227|6738_1  [L=120]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (120 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        77  (0.0187713); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.15s 00:00:00.29 Elapsed: 00:00:01.09
# Mc/sec: 145.31
//
Query:       MMETSP1137-20121227|6739_1  [L=494]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   4.2e-161  533.3   0.5     5e-161  533.0   0.4    1.0  1  TIGR00425 CBF5: putative rRNA pseudouridine synthase
    1.4e-31  107.7   0.2    8.2e-17   59.4   0.0    3.2  3  TIGR00431 TruB: tRNA pseudouridine synthase B
    2.8e-10   38.2   0.2    4.9e-10   37.4   0.1    1.4  1  TIGR00451 unchar_dom_2: uncharacterized domain 2
    8.6e-09   33.2   0.1    8.6e-09   33.2   0.1    1.9  2  TIGR03684 arCOG00985: arCOG04150 universal archaeal PUA-domain protein


Domain annotation for each model (and alignments):
>> TIGR00425  CBF5: putative rRNA pseudouridine synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  533.0   0.4  4.9e-164    5e-161       2     322 .]      49     373 ..      48     373 .. 0.99

  Alignments for each domain:
  == domain 1    score: 533.0 bits;  conditional E-value: 4.9e-164
   TIGR00425   2 kkleklivkeeaetnidyGsnPlkrdieeyikkGvvnldkPsgPsshevvawvrrilrvektGhsGtldPkvtGvlivaieratrlvkllqeagkeyvclvrlhrdvkee.dlervleeltGklfqrPPlksavkrqlrvrtiyelellevdgkd..vlfrvsceaGtyirklcedlGellGvgahmqelrrvrsGalee.delvtlhdlldayvlykedgdesylrevikPlevalaelkrvvvkdsavdaicyGadlavrGlakledgiekedtvvvitlkgeavavgkalmstkdiaaadkGvvvdvkrvlmergvyPrkwk 322
                 k+ ++l++++ ++t+i+ G +Plkr++ ey+k+Gv+nldkP +Psshevvaw+rrilrvektGhsGtldPkvtG+liv+i+ratrlvk++q agkey+++vrlh++++ e  l+++le+ltG+lfqrPPl+savkrqlrvrtiye +l+e+d+ +  ++frvsceaGtyir+lc+++G++lGvgahmqelrr rsG l+e +++vt+hd++da++l++ ++de+ylr+vikPle +l+++kr+v+kdsav+a+cyGa+l+++Gl+++ +gie++++vv++t+kgeavavg+a+m+t+d+a++d+Gvv+++krv+m+r++yPr+w+
  MMETSP1137-20121227|6739_1  49 KRYDELNIRTGHYTPIPNGYTPLKRPLAEYLKYGVINLDKPANPSSHEVVAWIRRILRVEKTGHSGTLDPKVTGCLIVCINRATRLVKSQQGAGKEYITVVRLHNAIQGErALTQCLEQLTGALFQRPPLISAVKRQLRVRTIYENKLIEFDEDRhlGIFRVSCEAGTYIRTLCVHIGLMLGVGAHMQELRRSRSGILSEqEHMVTMHDVMDAQYLFDSQKDETYLRHVIKPLELLLTNYKRLVLKDSAVNAVCYGAKLMLPGLLRFANGIEVNEEVVLMTTKGEAVAVGIAQMTTADMAHCDHGVVAKIKRVIMDRDTYPRRWG 373
                 7889*********************************************************************************************************989****************************************999899******************************************99**************************************************************************************************************************5 PP

>> TIGR00431  TruB: tRNA pseudouridine synthase B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.4   0.0     8e-20   8.2e-17       3      72 ..      82     151 ..      80     158 .. 0.96
   2 !    7.2   0.0   0.00075      0.77      85     122 ..     148     185 ..     147     194 .. 0.85
   3 !   41.2   0.1     3e-14     3e-11     136     203 ..     182     250 ..     181     257 .. 0.82

  Alignments for each domain:
  == domain 1    score: 59.4 bits;  conditional E-value: 8e-20
   TIGR00431   3 gvllldkpqgltsfdalakvkrllkvkkvGHtGtLDplaeGvlvllvGkatklseylteldkeYeaeirl 72 
                 gv++ldkp   +s++++a ++r+l+v+k GH+GtLDp ++G l++++ +at+l++    + keY  ++rl
  MMETSP1137-20121227|6739_1  82 GVINLDKPANPSSHEVVAWIRRILRVEKTGHSGTLDPKVTGCLIVCINRATRLVKSQQGAGKEYITVVRL 151
                 99**************************************************************999998 PP

  == domain 2    score: 7.2 bits;  conditional E-value: 0.00075
   TIGR00431  85 vvekkevvpeveeveaaleefkGeieqvPpeysalkvn 122
                 vv+ ++ ++   +++++le+++G + q Pp  sa+k +
  MMETSP1137-20121227|6739_1 148 VVRLHNAIQGERALTQCLEQLTGALFQRPPLISAVKRQ 185
                 666667777777999********************976 PP

  == domain 3    score: 41.2 bits;  conditional E-value: 3e-14
   TIGR00431 136 verkarkvtvfdlkllgkkeqeel.elevkCskGtYiRalardlgeklgsgAyvseLrRtrvgkfslde 203
                 v+r+ r  t+++ kl+   e  +l  ++v+C +GtYiR+l  ++g +lg+gA+++eLrR r+g +s +e
  MMETSP1137-20121227|6739_1 182 VKRQLRVRTIYENKLIEFDEDRHLgIFRVSCEAGTYIRTLCVHIGLMLGVGAHMQELRRSRSGILSEQE 250
                 6778888899999999744444442699**********************************9877554 PP

>> TIGR00451  unchar_dom_2: uncharacterized domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.4   0.1   4.8e-13   4.9e-10      20     105 ..     278     362 ..     258     364 .. 0.82

  Alignments for each domain:
  == domain 1    score: 37.4 bits;  conditional E-value: 4.8e-13
   TIGR00451  20 lkgakklkeekklvkvdegavkFllngadvlkPGiveadedikekdvvvvvdenkdralavGialvsgeeikevekGkavkvihhi 105
                 +k +  l  ++k+++++  av+ +  ga+++ PG+  + + i+ ++ vv++  +  +a+avGia +++ ++ + ++G + k+   i
  MMETSP1137-20121227|6739_1 278 IKPLELLLTNYKRLVLKDSAVNAVCYGAKLMLPGLLRFANGIEVNEEVVLMTTK-GEAVAVGIAQMTTADMAHCDHGVVAKIKRVI 362
                 444555677899*******************************99998888766.89********************998877666 PP

>> TIGR03684  arCOG00985: arCOG04150 universal archaeal PUA-domain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.2   0.1   8.3e-12   8.6e-09      70     143 ..     286     358 ..     234     365 .. 0.82
   2 ?   -8.7   5.6         4   4.1e+03       6      49 ..     442     485 ..     437     493 .. 0.62

  Alignments for each domain:
  == domain 1    score: 33.2 bits;  conditional E-value: 8.3e-12
   TIGR03684  70 lekkvvvVDeGAvkfiinGAdvmapGivevdeeikegdivvvveekhrkplavgvalmdaeeiveekkGkavkn 143
                  + k+ v  + Av+++  GA +m pG + + + i+ ++ vv ++ k ++ +avg+a m  +++ + + G ++k 
  MMETSP1137-20121227|6739_1 286 TNYKRLVLKDSAVNAVCYGAKLMLPGLLRFANGIEVNEEVVLMTTK-GEAVAVGIAQMTTADMAHCDHGVVAKI 358
                 34477777788*****************************999999.**********************98876 PP

  == domain 2    score: -8.7 bits;  conditional E-value: 4
   TIGR03684   6 kkelkelleeleeslgekaielekkkvevaetkkkeiilvdgkp 49 
                 +k+ k+ ++e +e++++k   ++k++ e+ e kk e    dg+p
  MMETSP1137-20121227|6739_1 442 EKKEKKDKSEKKEKSEKKDKGEKKDRSEKKEKKKRESXGGDGEP 485
                 34444445555556665666666677777777776766666666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (494 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       268  (0.065334); expected 82.0 (0.02)
Passed bias filter:                      137  (0.0333983); expected 82.0 (0.02)
Passed Vit filter:                        26  (0.00633837); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.47u 0.13s 00:00:00.60 Elapsed: 00:00:00.56
# Mc/sec: 1164.33
//
Query:       MMETSP1137-20121227|6740_1  [L=314]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.4e-13   46.8   0.2    1.2e-08   32.7   0.0    2.3  2  TIGR01830 3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase
    7.9e-11   39.6   0.0    1.1e-10   39.1   0.0    1.3  1  TIGR03206 benzo_BadH: 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase
    1.6e-09   35.3   0.2    3.2e-08   31.0   0.1    2.2  2  TIGR01963 PHB_DH: 3-hydroxybutyrate dehydrogenase
    5.8e-09   33.8   0.1    3.3e-06   24.8   0.0    2.2  2  TIGR01829 AcAcCoA_reduct: acetoacetyl-CoA reductase
      6e-06   23.6   0.1     0.0023   15.2   0.1    2.3  2  TIGR01831 fabG_rel: putative 3-oxoacyl-(acyl-carrier-protein) reductase
    7.9e-06   23.4   0.1    1.1e-05   22.9   0.1    1.1  1  TIGR01289 LPOR: light-dependent protochlorophyllide reductase
      4e-05   21.1   0.2     0.0013   16.1   0.1    2.1  2  TIGR01832 kduD: 2-deoxy-D-gluconate 3-dehydrogenase
    0.00058   17.2   0.4     0.0019   15.5   0.2    1.9  2  TIGR02415 23BDH: acetoin reductases
     0.0016   14.7   0.3      0.002   14.4   0.2    1.1  1  TIGR02632 RhaD_aldol-ADH: rhamnulose-1-phosphate aldolase/alcohol dehydrogenase
      0.005   13.6   0.0     0.0077   12.9   0.0    1.2  1  TIGR03965 actino_glycTran: mycofactocin system glycosyltransferase
  ------ inclusion threshold ------
      0.012   11.6   0.0      0.015   11.2   0.0    1.0  1  TIGR04075 bacter_Pnkp: polynucleotide kinase-phosphatase


Domain annotation for each model (and alignments):
>> TIGR01830  3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.7   0.0   3.3e-11   1.2e-08       1     138 [.       6     143 ..       6     147 .. 0.79
   2 !   11.7   0.0   8.7e-05     0.032     168     189 ..     209     230 ..     182     244 .. 0.78

  Alignments for each domain:
  == domain 1    score: 32.7 bits;  conditional E-value: 3.3e-11
   TIGR01830   1 alvtGasrgiGkaiakklak.egakvviterskeekaeelaeelke...agvkaaavkldvsdeeevkelveeveeel...geidilvnnAGitrDklllrmkeedwdevikvnLkgvfnvtkavlkkmikkrsGriinissvvg 138
                 ++vtG++ giG a+ k la+ +g++v + +r+ke+ ++++a+ +++      k   +++d +++e+v ++ ++++e l   +++  lvnnAG   ++       +  +ev++vn  g  +++ a    m+   +Gri+n++s +g
  MMETSP1137-20121227|6740_1   6 VVVTGGNAGIGLALCKILATdHGCHVYMGSRNKEKGLAAIASLVEAnksIESKLELLVVDTASDESVAAAAATLKEMLpsgETLYGLVNNAGTGFNH------GTSPEEVVNVNSYGPKRMVDAF-LPMLSPTEGRIVNVGSGAG 143
                 68****************9637************99988887776621145677888999999999988766666554221788889*****87553......455689********99999765.5799999*******99766 PP

  == domain 2    score: 11.7 bits;  conditional E-value: 8.7e-05
   TIGR01830 168 srnitvnavaPGfietdmtekl 189
                 + ni   +++PGfi+t mt+ +
  MMETSP1137-20121227|6740_1 209 HPNIVSSCISPGFINTAMTAGF 230
                 459999*************865 PP

>> TIGR03206  benzo_BadH: 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.1   0.0   3.1e-13   1.1e-10       5     142 ..       5     143 ..       1     174 [. 0.80

  Alignments for each domain:
  == domain 1    score: 39.1 bits;  conditional E-value: 3.1e-13
   TIGR03206   5 vaivtgggggiggaicrrfae.egakvavldlnaeaaek.va...aairekggkaeavavditdrasvdaavaaaeealgpvdv...lvnnagwdvlkpflktekaewerliainltgalymhhavlkgmverkagrivniasdaa 142
                  ++vtgg  gig a+c+ +a   g++v +   n+e     +a   +a ++   k e + vd ++ +sv aa a+ +e l   +    lvnnag      f +   +  e ++ +n +g   m  a l+ m+   +grivn+ s a+
  MMETSP1137-20121227|6740_1   5 RVVVTGGNAGIGLALCKILATdHGCHVYMGSRNKEKGLAaIAslvEANKSIESKLELLVVDTASDESVAAAAATLKEMLPSGETlygLVNNAGTG----FNHG--TSPEEVVNVNSYGPKRMVDAFLP-MLSPTEGRIVNVGSGAG 143
                 689**************99862699999999998865430330003344456778899********************9776652337*****65....4333..334789***************98.88999*********997 PP

>> TIGR01963  PHB_DH: 3-hydroxybutyrate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.0   0.1   8.5e-11   3.2e-08       2     139 ..       4     142 ..       3     149 .. 0.78
   2 ?    1.8   0.0     0.068        25     169     187 ..     208     226 ..     186     238 .. 0.80

  Alignments for each domain:
  == domain 1    score: 31.0 bits;  conditional E-value: 8.5e-11
   TIGR01963   2 kvalvtGaasGiglaiakelaaa.Gakvvvndle.eeaaeaaakeleea...ggevlalkadvtkeeeiadlieavaaefgsldi...LvnnAGiqhvapieefptekfekiiavnltsafhtiraalpimkkqgwGriiniasvh 139
                 + ++vtG ++Gigla+ k la + G++v + + + e++++a+a+ +e++     + + l++d ++ e++a   +++++ + s +    LvnnAG  + +        + e++++vn  ++ +++ a lp+      Gri+n++s  
  MMETSP1137-20121227|6740_1   4 RRVVVTGGNAGIGLALCKILATDhGCHVYMGSRNkEKGLAAIASLVEANksiESKLELLVVDTASDESVAAAAATLKEMLPSGETlygLVNNAGTGFNHG------TSPEEVVNVNSYGPKRMVDAFLPM-LSPTEGRIVNVGSGA 142
                 6799****************9744*******999555566666555443111456778899*999999*99999999988777763337*****876443......345789**********99999995.56678*******965 PP

  == domain 2    score: 1.8 bits;  conditional E-value: 0.068
   TIGR01963 169 AetgitanaicPgyvrtpL 187
                  + +i + +i Pg+++t +
  MMETSP1137-20121227|6740_1 208 QHPNIVSSCISPGFINTAM 226
                 445899**********987 PP

>> TIGR01829  AcAcCoA_reduct: acetoacetyl-CoA reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.8   0.0   8.8e-09   3.3e-06       4     137 ..       7     140 ..       4     145 .. 0.71
   2 !    6.9   0.0    0.0025      0.94     150     189 ..     191     228 ..     178     235 .. 0.77

  Alignments for each domain:
  == domain 1    score: 24.8 bits;  conditional E-value: 8.8e-09
   TIGR01829   4 lvtGglgGiGtaickrlakd.Gykvvanvapnee...rakewlqekevegfdvavvkadvssfeeakaavakveael...GpvdvlvnnaGitrdavfkkmtkeqWeevidtnlnsvfnvtrpviegmlergfGriiniss 137
                 +vtGg  GiG a+ck la+d G++v  + +++e+   + +++ ++++  ++++ ++ +d +s e+ +aa a +++ l    ++  lvnnaG      f++ t  + eev+++n  +   +       ml  + Gri+n+ s
  MMETSP1137-20121227|6740_1   7 VVTGGNAGIGLALCKILATDhGCHVYMGSRNKEKglaAIASLVEANKSIESKLELLVVDTASDESVAAAAATLKEMLpsgETLYGLVNNAGTG----FNHGT--SPEEVVNVNSYGPKRMVDAF-LPMLSPTEGRIVNVGS 140
                 79***************9755****99988754411134556778888899*********99998888777777765221456679*****64....44433..34677777777776666554.4577777788887776 PP

  == domain 2    score: 6.9 bits;  conditional E-value: 0.0025
   TIGR01829 150 ysaakaGliGftkalaqegakkgvtvnviaPGyiatemvk 189
                 y  +ka l  +t  la +  + +++   i+PG+i+t+m++
  MMETSP1137-20121227|6740_1 191 YGFSKAILSIYTLLLASQ--HPNIVSSCISPGFINTAMTA 228
                 555666666666666655..568999************86 PP

>> TIGR01831  fabG_rel: putative 3-oxoacyl-(acyl-carrier-protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.1   6.1e-06    0.0023       1      87 [.       6      99 ..       6     147 .. 0.72
   2 !    6.4   0.0    0.0029       1.1     166     188 ..     204     228 ..     180     244 .. 0.75

  Alignments for each domain:
  == domain 1    score: 15.2 bits;  conditional E-value: 6.1e-06
   TIGR01831  1 vlvtgasrgigraialklaad.gfeiavhyrsdradaeesvaairaqgg...narllkfdvadrvavr...evleadiaehgayygvvlnagia 87
                v+vtg   gig a+   la+d g ++ +  r+++ +  + ++ ++a+ +   + +ll  d a  ++v    + l++ + +  + yg+v nag  
  MMETSP1137-20121227|6740_1  6 VVVTGGNAGIGLALCKILATDhGCHVYMGSRNKEKGLAAIASLVEANKSiesKLELLVVDTASDESVAaaaATLKEMLPSGETLYGLVNNAGTG 99
                79*************999987688999988888887777777777776511155667777776554431114466666666789*******975 PP

  == domain 2    score: 6.4 bits;  conditional E-value: 0.0029
   TIGR01831 166 elakr..kitvnciapglidtemva 188
                  la++  +i   ci+pg+i+t m a
  MMETSP1137-20121227|6740_1 204 LLASQhpNIVSSCISPGFINTAMTA 228
                 445441269999***********87 PP

>> TIGR01289  LPOR: light-dependent protochlorophyllide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.9   0.1   2.9e-08   1.1e-05       5      93 ..       5     100 ..       2     115 .. 0.81

  Alignments for each domain:
  == domain 1    score: 22.9 bits;  conditional E-value: 2.9e-08
   TIGR01289   5 tviitgassglglaaakalvekgkwhvvmacrdlekaekaakslglpkds....ytilkldlasldsvrkfveqfre...sgrsldalvcnaavyl 93 
                  v++tg  +g+gla  k l+     hv m  r+ ek   a  sl  +++s      +l +d as +sv    ++++e   sg +l  lv na   +
  MMETSP1137-20121227|6740_1   5 RVVVTGGNAGIGLALCKILATDHGCHVYMGSRNKEKGLAAIASLVEANKSieskLELLVVDTASDESVAAAAATLKEmlpSGETLYGLVNNAGTGF 100
                 599****************98777************988877765554441112579999*********999999875557999999999997765 PP

>> TIGR01832  kduD: 2-deoxy-D-gluconate 3-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.1   3.6e-06    0.0013       6      90 ..       4      98 ..       1     140 [. 0.70
   2 ?    3.0   0.0     0.034        13     152     196 ..     190     232 ..     186     242 .. 0.77

  Alignments for each domain:
  == domain 1    score: 16.1 bits;  conditional E-value: 3.6e-06
   TIGR01832  6 kvalvtGantGlGqgiavglae.aGadivgvgisels...etqekvea...lGrkflslkadladee...aakalvdeaveeagkidilvnnaGi 90
                ++++vtG n+G+G +++  la+  G+++   ++++ +     ++ vea   +  k++ l +d a+ e   aa+a ++e++ + + +  lvnnaG 
  MMETSP1137-20121227|6740_1  4 RRVVVTGGNAGIGLALCKILATdHGCHVYMGSRNKEKglaAIASLVEAnksIESKLELLVVDTASDEsvaAAAATLKEMLPSGETLYGLVNNAGT 98
                789*****************97268887655544433111233444441113455666677776655111345567777778889********95 PP

  == domain 2    score: 3.0 bits;  conditional E-value: 0.034
   TIGR01832 152 sytasksavaGltkllanewakkginvnaiaPGyletnntealra 196
                 +y  sk  +   t lla++  + +i    i+PG+++t+ t+ + a
  MMETSP1137-20121227|6740_1 190 AYGFSKAILSIYTLLLASQ--HPNIVSSCISPGFINTAMTAGFGA 232
                 6777777666677777775..4689999**********9987666 PP

>> TIGR02415  23BDH: acetoin reductases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.2   5.2e-06    0.0019       3      90 ..       6     101 ..       4     151 .. 0.72
   2 ?   -1.2   0.0      0.64   2.4e+02     173     195 ..     212     234 ..     182     248 .. 0.68

  Alignments for each domain:
  == domain 1    score: 15.5 bits;  conditional E-value: 5.2e-06
   TIGR02415   3 alvtGaaqGiGkaiaerLakd.Gfavavadlneetaketakelkekg....tkavavkldvsdkseveeaveqavekl..G.eldvlvnnaGvalv 90 
                  +vtG+  GiG a+ + La d G +v +   n+e+  +++  l e++     k   +++d ++ ++v +a  + +e l  G +l  lvnnaG ++ 
  MMETSP1137-20121227|6740_1   6 VVVTGGNAGIGLALCKILATDhGCHVYMGSRNKEKGLAAIASLVEANksieSKLELLVVDTASDESVAAAAATLKEMLpsGeTLYGLVNNAGTGFN 101
                 58*****************9889*******996666666655554430111344556666666666665555555544333258889****98765 PP

  == domain 2    score: -1.2 bits;  conditional E-value: 0.64
   TIGR02415 173 itvnayaPGivktemreeidekl 195
                 i   + +PG ++t+m++   + +
  MMETSP1137-20121227|6740_1 212 IVSSCISPGFINTAMTAGFGASK 234
                 44556789999999998775544 PP

>> TIGR02632  RhaD_aldol-ADH: rhamnulose-1-phosphate aldolase/alcohol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.2   5.5e-06     0.002     415     488 ..       4      80 ..       1     109 [. 0.71

  Alignments for each domain:
  == domain 1    score: 14.4 bits;  conditional E-value: 5.5e-06
   TIGR02632 415 rvalvtGgasGiGrevarrlv.deGahvvladldaeaaeavaaelvd..kfGadkavalkldvtdeeavkaafaeva 488
                 r ++vtGg +GiG ++++ l+ d+G hv +   ++e+  a  a lv+  k  + k   l++d +++e+v+aa a   
  MMETSP1137-20121227|6740_1   4 RRVVVTGGNAGIGLALCKILAtDHGCHVYMGSRNKEKGLAAIASLVEanKSIESKLELLVVDTASDESVAAAAATLK 80 
                 5578**************998467999*******999777666666411333444455899*******998866543 PP

>> TIGR03965  actino_glycTran: mycofactocin system glycosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.9   0.0   2.1e-05    0.0077      78     126 ..      31      79 ..      17      84 .. 0.89

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 2.1e-05
   TIGR03965  78 vVvPvrdrpaglarllaalealdyprdrlevivVDDgSedpvetaaara 126
                 v + +r++++gla+++  +ea +  + +le++vVD +S++ v++aaa+ 
  MMETSP1137-20121227|6740_1  31 VYMGSRNKEKGLAAIASLVEANKSIESKLELLVVDTASDESVAAAAATL 79 
                 55678*************************************9998764 PP

>> TIGR04075  bacter_Pnkp: polynucleotide kinase-phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   4.2e-05     0.015     678     748 ..      13      86 ..       3     103 .. 0.84

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 4.2e-05
   TIGR04075 678 ddlklapfhilaaeg..kvya.dkdhewhlellaklaeaddelllatrykvvdledeesveaavkwWeeltakg 748
                  ++ la  +ila++   +vy+ +++ e  l+ +a l+ea++++  + +  vvd++++esv+aa++  +e+  +g
  MMETSP1137-20121227|6740_1  13 AGIGLALCKILATDHgcHVYMgSRNKEKGLAAIASLVEANKSIESKLELLVVDTASDESVAAAAATLKEMLPSG 86 
                 67889999*****9845444437899999**********************************99999987766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (314 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       145  (0.0353486); expected 82.0 (0.02)
Passed bias filter:                      133  (0.0324232); expected 82.0 (0.02)
Passed Vit filter:                        20  (0.00487567); expected 4.1 (0.001)
Passed Fwd filter:                        11  (0.00268162); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.34u 0.15s 00:00:00.49 Elapsed: 00:00:00.98
# Mc/sec: 422.90
//
Query:       MMETSP1137-20121227|6741_1  [L=171]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (171 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       116  (0.0282789); expected 82.0 (0.02)
Passed bias filter:                      104  (0.0253535); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.13s 00:00:00.31 Elapsed: 00:00:00.32
# Mc/sec: 705.32
//
Query:       MMETSP1137-20121227|6742_1  [L=780]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (780 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        83  (0.020234); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.48u 0.13s 00:00:00.61 Elapsed: 00:00:00.69
# Mc/sec: 1492.05
//
Query:       MMETSP1137-20121227|6743_1  [L=217]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (217 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        52  (0.0126767); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.11s 00:00:00.28 Elapsed: 00:00:00.52
# Mc/sec: 550.80
//
Query:       MMETSP1137-20121227|6744_1  [L=479]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.8e-67  225.5   0.0    2.3e-67  225.1   0.0    1.1  1  TIGR00174 miaA: tRNA dimethylallyltransferase


Domain annotation for each model (and alignments):
>> TIGR00174  miaA: tRNA dimethylallyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  225.1   0.0   5.6e-71   2.3e-67       1     286 [.      36     340 ..      36     342 .. 0.90

  Alignments for each domain:
  == domain 1    score: 225.1 bits;  conditional E-value: 5.6e-71
   TIGR00174   1 vivlvGptavGKsqlaiqlakklnaeiisvDslqiYKdldIgtaKpsleerkaipHhlldildpseeysaaefkeealeaiadiskrgkipllvGGtalYlkalleglsstpsae...dklireeleeeaeekgkdvlykeLkkvDPeaaakihpndtrRvkraLEvfyatgkklsellke........qkkelkydivllalalereaLkerieqRvdemlesGlleEvkkLyekysk.idlpslkaiGykelleyleg.......evsledlierikkntrqyAKRQltwlrkksavlwldse 286
                 vivl+GptavGKs+l + l + l++e+isvDs+q+Y++l+Ig++Kps+ e++ +pHhl+di++p ++y+a  f+++al+a++++ +rgk p+lvGGt++Ylk l++g+++ p ++    k  ++ l+  ++  ++++ ++ L++ D ++a+++  nd +R++raL v  +t +  ++  +         ++ + + d+  ++l+  re+L +ri++R ++m+++Gl+eEv +L +       +p+ +aiGy++ + yl +       + +l+  +e    ++rqyA +Q++w+rk+    w++++
  MMETSP1137-20121227|6744_1  36 VIVLTGPTAVGKSALGLRLCEALPGELISVDSVQVYRGLQIGANKPSASELARVPHHLVDICEPRDDYTAGAFYRDALKAVKQVLERGKTPVLVGGTSMYLKWLVNGRPDAPRSDpaiAKRAHAMLQDYEKAGDWNSALSRLAEYDSHRAKELFANDWYRLHRALVVALQTQEGSTNQEEPvepevlqlDELRASLDMRCFFLTFPREQLCRRIDSRCEQMVQAGLIEEVAELLATERLlPSSPAGRAIGYRQTIDYLLRepfvpddKGALQHFVEGFAAASRQYAAKQTKWFRKEPLFRWVETT 340
                 79************************************************************************************************************999842113445667888888899***********************************9977655443321111110033344678999**********************************9999867899**************999999998999**************************999999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (479 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       173  (0.0421745); expected 82.0 (0.02)
Passed bias filter:                      162  (0.0394929); expected 82.0 (0.02)
Passed Vit filter:                        31  (0.00755729); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.14s 00:00:00.54 Elapsed: 00:00:00.73
# Mc/sec: 866.07
//
Query:       MMETSP1137-20121227|6745_1  [L=903]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.014   12.5   0.0      0.023   11.8   0.0    1.2  1  TIGR01486 HAD-SF-IIB-MPGP: mannosyl-3-phosphoglycerate phosphatase family


Domain annotation for each model (and alignments):
>> TIGR01486  HAD-SF-IIB-MPGP: mannosyl-3-phosphoglycerate phosphatase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   5.7e-06     0.023      80     146 ..     407     473 ..     395     488 .. 0.82

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 5.7e-06
   TIGR01486  80 eeialGksyekiraeLeeleeelglklkglgdltaeeiaeltGLsreaaalaqereysetlle.dsee 146
                 + + lG+++ ++ ++L +l + +  +  +l++l  ++  ++ GL+  + a a++reyse +     ++
  MMETSP1137-20121227|6745_1 407 QLEYLGWRAVQLPTALAKLLKAA-TNCPTLDQLWSQAESRVRGLPDWQPANAAQREYSERFRAaAADW 473
                 55679************998877.77778******************************997744444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (903 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        78  (0.0190151); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.15s 00:00:00.67 Elapsed: 00:00:00.56
# Mc/sec: 2090.99
//
Query:       MMETSP1137-20121227|6746_1  [L=454]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.5e-09   33.9   0.0    1.1e-06   26.0   0.0    2.5  2  TIGR03596 GTPase_YlqF: ribosome biogenesis GTP-binding protein YlqF
    1.3e-07   28.8   0.0    4.9e-07   26.9   0.0    1.8  2  TIGR03594 GTPase_EngA: ribosome-associated GTPase EngA
      0.008   13.1   0.0       0.12    9.2   0.0    2.0  2  TIGR00450 mnmE_trmE_thdF: tRNA modification GTPase TrmE
  ------ inclusion threshold ------
      0.017   12.0   0.0      0.026   11.4   0.0    1.2  1  TIGR00991 3a0901s02IAP34: GTP-binding protein
       0.51    6.8   8.7      0.073    9.5   0.0    2.1  2  TIGR00437 feoB: ferrous iron transport protein B


Domain annotation for each model (and alignments):
>> TIGR03596  GTPase_YlqF: ribosome biogenesis GTP-binding protein YlqF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.0   0.0   1.4e-09   1.1e-06      15      76 ..     124     187 ..     117     206 .. 0.85
   2 !    5.1   0.0    0.0033       2.7     106     139 ..     236     269 ..     221     277 .. 0.79

  Alignments for each domain:
  == domain 1    score: 26.0 bits;  conditional E-value: 1.4e-09
   TIGR03596  15 ikeklklvDvvievlDARiplssknpeleelvk..nkprlivlnkaDladpektkkwlkyfeek 76 
                 ++e + +++vv+ vlDAR p s++   le+ +    k  +++lnk Dl+ +++ ++wl+ ++++
  MMETSP1137-20121227|6746_1 124 LHEVITSANVVLLVLDARDPASCRSLALEQALLecGKLPILLLNKCDLVPRANLNAWLTALRNE 187
                 7888999**********************9887568999********************99964 PP

  == domain 2    score: 5.1 bits;  conditional E-value: 0.0033
   TIGR03596 106 keklkakglkkkairalvvGiPNvGKStliNrla 139
                  + +++kg +++++ + vvG+  vGK ++i  + 
  MMETSP1137-20121227|6746_1 236 AAYRQQKGETTSPLTVGVVGFDGVGKRSVIRLVK 269
                 455678**********************996443 PP

>> TIGR03594  GTPase_EngA: ribosome-associated GTPase EngA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.9   0.0     6e-10   4.9e-07     251     320 ..     124     192 ..     105     199 .. 0.88
   2 ?   -1.2   0.0       0.2   1.6e+02     164     192 ..     239     265 ..     224     272 .. 0.68

  Alignments for each domain:
  == domain 1    score: 26.9 bits;  conditional E-value: 6e-10
   TIGR03594 251 tlkaieradvvllvlDategiseqDlkiaglileegkalvivvNKwDlvkdekeleelkkeleeklkflk 320
                   ++i++a+vvllvlDa+++ s   l + + +le gk  ++++NK+Dlv  +++l+++ + l+++l++l 
  MMETSP1137-20121227|6746_1 124 LHEVITSANVVLLVLDARDPASCRSLALEQALLECGKLPILLLNKCDLV-PRANLNAWLTALRNELPTLP 192
                 4689*********************************************.999****9999999999875 PP

  == domain 2    score: -1.2 bits;  conditional E-value: 0.2
   TIGR03594 164 eeeeeeeeeeepikiaiiGrpNvGKStLv 192
                 ++++ e  +++p+ ++++G   vGK + +
  MMETSP1137-20121227|6746_1 239 RQQKGE--TTSPLTVGVVGFDGVGKRSVI 265
                 333333..367899**********99876 PP

>> TIGR00450  mnmE_trmE_thdF: tRNA modification GTPase TrmE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.2   0.0   0.00015      0.12     284     335 ..     126     178 ..     118     201 .. 0.77
   2 ?    1.5   0.0     0.031        26     191     234 ..     229     273 ..     225     280 .. 0.80

  Alignments for each domain:
  == domain 1    score: 9.2 bits;  conditional E-value: 0.00015
   TIGR00450 284 kaikeadlvlyvlDaskpltkdd.eliitlkkkkkdlllvlNKiDLaeleilk 335
                 + i  a++vl+vlDa+ p       l + l    k  +l+lNK DL+    l+
  MMETSP1137-20121227|6746_1 126 EVITSANVVLLVLDARDPASCRSlALEQALLECGKLPILLLNKCDLVPRANLN 178
                 67999*************9776634555566677888999******9444443 PP

  == domain 2    score: 1.5 bits;  conditional E-value: 0.031
   TIGR00450 191 aelkdllns.rkkleklkdglklaivGktNvGKSSLlNallkkdr 234
                 ++l++ll + r++  +   +l + +vG   vGK S++ ++  ++ 
  MMETSP1137-20121227|6746_1 229 ETLHELLAAyRQQKGETTSPLTVGVVGFDGVGKRSVIRLVKAQQW 273
                 5788888875445578899****************9988877765 PP

>> TIGR00991  3a0901s02IAP34: GTP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   3.1e-05     0.026      22      62 ..     229     272 ..     217     290 .. 0.78

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 3.1e-05
   TIGR00991  22 tkllellgklke...edvssltilvmgkggvgksstvnsiiger 62 
                   l+ell  +++   e  s lt+ v+g  gvgk s +  +  ++
  MMETSP1137-20121227|6746_1 229 ETLHELLAAYRQqkgETTSPLTVGVVGFDGVGKRSVIRLVKAQQ 272
                 46999999886533378899***************998876665 PP

>> TIGR00437  feoB: ferrous iron transport protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   3.8       0.2   1.7e+02     154     235 ..      13      94 ..       5     130 .. 0.71
   2 ?    9.5   0.0   8.9e-05     0.073      72     139 ..     130     197 ..     125     214 .. 0.82

  Alignments for each domain:
  == domain 1    score: -1.5 bits;  conditional E-value: 0.2
   TIGR00437 154 kaiklvekkkraieilkeaeslaevkeklkelkqklkkglevleglleeraleiekiekelaevvkkesesklsateiadee 235
                  + + +++k+++++ ++e ++ ++ ++k ++ k++ k+++ + ++  ++++l  e+ +++ aev+  ++  ++ + e a+++
  MMETSP1137-20121227|6746_1  13 SKRTSLHDKHKIERKVREHHRKERRDKKRNPHKYRKKRDPGIPNTWPFKQQLLLEQEQQREAEVAARTEAREARKRERAEQR 94 
                 4455667788888888888888888888888888888888888888888888888888888888777766666655555553 PP

  == domain 2    score: 9.5 bits;  conditional E-value: 8.9e-05
   TIGR00437  72 kadLvvnvvdasn..leRnLyltlQllelgiplilalNlvdeAekkgirideekLeerLGvpvvplsatk 139
                 +a++v+ v+da      R L+l   lle g+  il+lN++d+  + +++    +L ++L  p +p+sa+ 
  MMETSP1137-20121227|6746_1 130 SANVVLLVLDARDpaSCRSLALEQALLECGKLPILLLNKCDLVPRANLNAWLTALRNEL--PTLPVSAAA 197
                 5899*******862256******************************999999999998..555555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (454 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       211  (0.0514383); expected 82.0 (0.02)
Passed bias filter:                      120  (0.029254); expected 82.0 (0.02)
Passed Vit filter:                        19  (0.00463189); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.41u 0.16s 00:00:00.56 Elapsed: 00:00:00.64
# Mc/sec: 936.30
//
Query:       MMETSP1137-20121227|6747_1  [L=484]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.03   10.9   0.6      0.047   10.3   0.4    1.2  1  TIGR02927 SucB_Actino: 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase


Domain annotation for each model (and alignments):
>> TIGR02927  SucB_Actino: 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.4   1.2e-05     0.047     170     255 ..     377     462 ..     349     472 .. 0.76

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 1.2e-05
   TIGR02927 170 teipspvaGtlleilaeeddtvevGavlakiGddagaedepkeeekpekseakseekpeaaepkaekkeepkpepkae.ekapaaka 255
                 t +p+  a  l + +a      + G+ + ++  + + ed+p+++ +  ++ea +e++ +  e+++e+  e++p+ + e e++ a++ 
  MMETSP1137-20121227|6747_1 377 TSVPTCSAHSLFKSTAASRSGEQSGGDIEIVDLEQPEEDHPQPDGQSGEQEAMQEPEQAR-EQEPEQAREQEPDEAHEqEPEQAPQQ 462
                 7899999999999999999999999999999889999****9999999999988876554.44455555555554443035555444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (484 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       240  (0.058508); expected 82.0 (0.02)
Passed bias filter:                       98  (0.0238908); expected 82.0 (0.02)
Passed Vit filter:                        19  (0.00463189); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.17s 00:00:00.56 Elapsed: 00:00:00.43
# Mc/sec: 1485.64
//
Query:       MMETSP1137-20121227|6748_1  [L=449]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (449 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       138  (0.0336421); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.16s 00:00:00.47 Elapsed: 00:00:00.36
# Mc/sec: 1646.20
//
Query:       MMETSP1137-20121227|6749_1  [L=285]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      6e-24   82.8   0.0    7.3e-19   66.1   0.0    2.0  2  TIGR00290 MJ0570_dom: MJ0570-related uncharacterized domain
    2.4e-23   80.4   0.0    8.4e-19   65.5   0.0    2.0  2  TIGR03679 arCOG00187: arCOG00187 universal archaeal metal-binding-domain/4Fe-4S-binding-domain containing ABC transporter, ATP-binding protein
    1.9e-18   64.6   0.0      4e-16   57.0   0.0    2.0  2  TIGR00289 TIGR00289: TIGR00289 family protein


Domain annotation for each model (and alignments):
>> TIGR00290  MJ0570_dom: MJ0570-related uncharacterized domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.1   0.0   5.4e-22   7.3e-19       2     179 ..      12     196 ..      11     208 .. 0.81
   2 !   14.8   0.0   2.7e-06    0.0036     173     204 ..     229     260 ..     219     280 .. 0.85

  Alignments for each domain:
  == domain 1    score: 66.1 bits;  conditional E-value: 5.4e-22
   TIGR00290   2 kvialisGGkDsilalykalke..heveaLvnilseneesymfhtvnldlvdllaeaiGipliklnteatee.deveeLkellkklk....veavvvGai..lseyqktriervCrelGlkvlapLWkrdpaelleeiveekFeariiavaaegldekfLGrrldkkmidelkklne.kygvhiagEg 179
                 ++++ + GGkD + al ka ++   +v aLv   +  +    f++  l l++++a a+ +pl+++ ++ +    ++    + +++l+    +e + +G++  + + ++++ie+  +++Gl+   pLW++d +  l  +++e+ +a+   v+    d +++Grrld   +++l+ ++     v+  gEg
  MMETSP1137-20121227|6749_1  12 RTAISWTGGKDCNHALLKAWRDssLDVVALVVFAPPKP-N--FRAHPLPLMEAQASALSLPLLHVTVDPEAHgGYMAAYVDGMRTLReeheIEVIATGDMdlVGDMKRNWIEECGEKVGLRAYLPLWQADREANLRTLLAEGVDAVFSCVKSPWFDASWIGRRLDESGVEQLAAMAAaTPHVKSEGEG 196
                 67889****************95556666665555444.4..5677789***************777665431566777777777777777*******862156899*****************************************************************9886413456666666 PP

  == domain 2    score: 14.8 bits;  conditional E-value: 2.7e-06
   TIGR00290 173 vhiagEgGEfetlvlDaPlfkkrlevieiekk 204
                 +++ gE GE++t+vl++Plf + +++ +++++
  MMETSP1137-20121227|6749_1 229 LDLGGERGEYHTMVLNSPLFIQPVRLAKASAY 260
                 6789****************998888777665 PP

>> TIGR03679  arCOG00187: arCOG00187 universal archaeal metal-binding-domain/4Fe-4S-binding-domain containing ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.5   0.0   6.2e-22   8.4e-19       5     180 ..      18     196 ..      14     202 .. 0.89
   2 !   12.9   0.0   7.7e-06     0.011     174     203 ..     229     258 ..     222     267 .. 0.86

  Alignments for each domain:
  == domain 1    score: 65.5 bits;  conditional E-value: 6.2e-22
   TIGR03679   5 sGGKDSlyalykalee.GlevkklitvkpeneeSymfhvpnielaklqaealgielvevetsgvk.ekeledlkkalkelkee.gvegivtGaia..SeYQkeriericeelglkvfaPlWkkdqeellrelveagfeviivsvsaeGLdeewlGkeideelieelkalnkky.giniagEG 180
                 +GGKD + al+ka ++  l+v  l+   p ++    f++  + l + qa+al+++l++v+++ +     +  + + +++l+ee ++e i tG +    +  ++ ie+  e++gl+++ PlW++d+e  lr+l+ +g++++++ v +  +d++w+G+++de+ +e+l+a++    +++  gEG
  MMETSP1137-20121227|6749_1  18 TGGKDCNHALLKAWRDsSLDVVALVVFAPPKP---NFRAHPLPLMEAQASALSLPLLHVTVDPEAhGGYMAAYVDGMRTLREEhEIEVIATGDMDlvGDMKRNWIEECGEKVGLRAYLPLWQADREANLRTLLAEGVDAVFSCVKSPWFDASWIGRRLDESGVEQLAAMAAATpHVKSEGEG 196
                 8************9752689*****9999995...5999999******************98665156788999999***9999********865227899999***************************************************************997654378888888 PP

  == domain 2    score: 12.9 bits;  conditional E-value: 7.7e-06
   TIGR03679 174 iniagEGGEyEtlVldaPlfkkrieieeae 203
                 +++ gE GEy t+Vl++Plf + + + +a+
  MMETSP1137-20121227|6749_1 229 LDLGGERGEYHTMVLNSPLFIQPVRLAKAS 258
                 56789***************9999987765 PP

>> TIGR00289  TIGR00289: TIGR00289 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.0   0.0   2.9e-19     4e-16       2     178 ..      12     196 ..      11     209 .. 0.80
   2 !    5.6   0.0    0.0015         2     173     198 ..     230     255 ..     221     263 .. 0.83

  Alignments for each domain:
  == domain 1    score: 57.0 bits;  conditional E-value: 2.9e-19
   TIGR00289   2 kvavlysGGkdsilalykalke..sevkflvsviseneesymfhvpnvhltelvaeavGipliklyta.....GeeekevedlagtlekldveavviGave..seyqksridkvcrelGlksvaplwkkdpe.klleevaekfeviivavaaeGldesflGrridkelidelkdlseky.gihkafeG 178
                 ++a+ ++GGkd + al ka ++   +v  lv   +  ++   f    + l+e  a a+ +pl ++ +      G     v+ ++   e+ ++e + +G ++   + +++ i++  +++Gl++  plw++d e  l + +ae+ +++  +v++  +d s++Grr+d   +++l+ ++     ++  +eG
  MMETSP1137-20121227|6749_1  12 RTAISWTGGKDCNHALLKAWRDssLDVVALVVFAPPKPN---FRAHPLPLMEAQASALSLPLLHVTVDpeahgGYMAAYVDGMRTLREEHEIEVIATGDMDlvGDMKRNWIEECGEKVGLRAYLPLWQADREaNLRTLLAEGVDAVFSCVKSPWFDASWIGRRLDESGVEQLAAMAAATpHVKSEGEG 196
                 679999*************99944577777766666554...6777899***************999722222344566777777777778*******875226777888*********************61567778*********************************9987543145555666 PP

  == domain 2    score: 5.6 bits;  conditional E-value: 0.0015
   TIGR00289 173 hkafeGGeaetlvldaplfkkrievv 198
                 ++ +e Ge+ t+vl++plf + +++ 
  MMETSP1137-20121227|6749_1 230 DLGGERGEYHTMVLNSPLFIQPVRLA 255
                 567999*************8777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (285 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        76  (0.0185275); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.26u 0.16s 00:00:00.42 Elapsed: 00:00:00.33
# Mc/sec: 1139.91
//
Query:       MMETSP1137-20121227|6750_1  [L=435]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.048   10.3   6.2      0.067    9.8   3.9    1.5  2  TIGR03919 T7SS_EccB: type VII secretion protein EccB
        5.2    3.3  12.5        7.7    2.7   8.7    1.1  1  TIGR01348 PDHac_trf_long: dihydrolipoyllysine-residue acetyltransferase


Domain annotation for each model (and alignments):
>> TIGR03919  T7SS_EccB: type VII secretion protein EccB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   3.9   3.3e-05     0.067     283     379 ..     207     303 ..     200     315 .. 0.87
   2 ?   -3.6   0.0      0.37   7.7e+02     328     350 ..     409     431 ..     407     433 .. 0.77

  Alignments for each domain:
  == domain 1    score: 9.8 bits;  conditional E-value: 3.3e-05
   TIGR03919 283 itevvaallrnansqgaaeppavaadvvaklpevealdvsalPdtplelvdakeepvlCaswekgageqaaetsllsgralpvpedaravelaqadg 379
                 +++ ++++ +++   +a+++ a+aa+  a++p++++   ++ P++++++ + ++++++C +++ ++ +   + s+ ++ a p ++ +++ ++aq+d 
  MMETSP1137-20121227|6750_1 207 VDRGQRDAAEKTSMSQAKRAAALAAEHAAQHPDAANQTERHAPTDNINTTADTTSQTACQTTTVSTAGAGHNASVATAPAAPAATLTATEQAAQSDV 303
                 5667888899999999***********************************************9999999************666666666666654 PP

  == domain 2    score: -3.6 bits;  conditional E-value: 0.37
   TIGR03919 328 plelvdakeepvlCaswekgage 350
                 +le + ++ ep lC  we+++g+
  MMETSP1137-20121227|6750_1 409 ALEAIYVELEPSLCYVWERQQGH 431
                 56667777899******998875 PP

>> TIGR01348  PDHac_trf_long: dihydrolipoyllysine-residue acetyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   8.7    0.0038       7.7      68     157 ..     204     297 ..     199     313 .. 0.63

  Alignments for each domain:
  == domain 1    score: 2.7 bits;  conditional E-value: 0.0038
   TIGR01348  68 avilllevadgaad..daeekaeaasaaagaa...daakdveaeqalisveadkaaqevqdafketvkageagaaadaakkeaaPaeaqasgvke 157
                 +v++  +  d+a++   +++k+ aa aa+ aa   daa++ e +  +++ ++   + ++ ++++ tv ++ ag  a+ a ++aaPa++ +++ ++
  MMETSP1137-20121227|6750_1 204 GVVVDRGQRDAAEKtsMSQAKRAAALAAEHAAqhpDAANQTERHAPTDNINTTADTTSQTACQTTTVSTAGAGHNASVATAPAAPAATLTAT-EQ 297
                 55555555544443222333333333333222111566668888778877777777788999999999999999999999999999986553.33 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (435 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       150  (0.0365675); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.34u 0.18s 00:00:00.52 Elapsed: 00:00:00.62
# Mc/sec: 926.05
//
Query:       MMETSP1137-20121227|6751_1  [L=264]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (264 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        99  (0.0241346); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.15s 00:00:00.38 Elapsed: 00:00:00.34
# Mc/sec: 1024.86
//
Query:       MMETSP1137-20121227|6752_1  [L=370]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   1.2e-129  430.1   0.0   1.4e-129  429.9   0.0    1.0  1  TIGR00169 leuB: 3-isopropylmalate dehydrogenase
    7.7e-87  289.3   0.0    8.8e-87  289.2   0.0    1.0  1  TIGR02088 LEU3_arch: isopropylmalate/isohomocitrate dehydrogenases
    3.2e-70  234.6   0.0    3.8e-70  234.4   0.0    1.0  1  TIGR02089 TTC: tartrate dehydrogenase
    1.2e-54  184.0   0.0    1.5e-54  183.6   0.0    1.2  1  TIGR02924 ICDH_alpha: isocitrate dehydrogenase
    2.1e-54  182.7   0.0    2.6e-54  182.4   0.0    1.1  1  TIGR00175 mito_nad_idh: isocitrate dehydrogenase, NAD-dependent
    5.7e-40  135.2   0.1      3e-29   99.9   0.1    2.1  2  TIGR00183 prok_nadp_idh: isocitrate dehydrogenase, NADP-dependent
  ------ inclusion threshold ------
      0.011   12.1   0.0       0.32    7.3   0.0    2.1  2  TIGR00127 nadp_idh_euk: isocitrate dehydrogenase, NADP-dependent


Domain annotation for each model (and alignments):
>> TIGR00169  leuB: 3-isopropylmalate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  429.9   0.0  2.4e-132  1.4e-129       1     348 [.      20     365 ..      20     366 .. 0.97

  Alignments for each domain:
  == domain 1    score: 429.9 bits;  conditional E-value: 2.4e-132
   TIGR00169   1 kiavLpGDgiGpevvaealkvLkaveerfelklefeealiGGaaidatgePlpeetlkackeadavLlgavGGpkWdnl.prdvrPek.gLLklrkeldlfanLrPaklfksLeklsplkeeiv.kgvDlvvvreLtgGiYfGepkereeaeeekkaldtekYtkeeieriarvafelarkrrkkvtsvDkanvLessrlWrktveeiakeyPdvelehlyiDnaamqLvksPeqldvvvtsnlfGDilsDeasvitGslGlLPsaslsskglalfepvhgsapdiagkgianpiaailsaalllryslnleeaaeaieaavkkvleegkrtedlaseattavstkeveee 348
                 ++av+pGDgiGpev+aea+kvL++ + +f+l++e e+ l+GGaa d +ge lp+ tl+ c++a a+L+g+vGGp  ++  p+    e+ ++L +rk +dl  n+rPa++++sL+++spl+++iv kgvDlv++reL gGiYfGe + + +    + a d  +Y++  i+r    afe+a++rr+k+t vDkanvL++srlWrk+++e+a ++P+ve+e +y+DnaamqL+++P+ +dv+vt+nlfGD+lsD asv++GslGl+Psasl+ ++  ++ep +gsapdiagkg+anp+a+il +a++lr s++++eaa+aie+av+ + + g  t+dlas ++++vst+e ++ 
  MMETSP1137-20121227|6752_1  20 RVAVIPGDGIGPEVMAEATKVLERASSKFGLEFELEHGLVGGAAYDVHGEHLPQVTLDICSRAAAILYGSVGGPVHEQHlPKWHNSERnAVLGMRKAFDLAVNVRPATVYPSLTHASPLRPDIVaKGVDLVIIRELLGGIYFGEHRRTMG----DVAEDVCTYSVAQIRRPLEFAFEAAKQRRHKLTVVDKANVLDTSRLWRKVAQEMAPNHPEVEVEYMYVDNAAMQLIQKPSAFDVIVTENLFGDVLSDAASVLPGSLGLMPSASLG-SRINMYEPSGGSAPDIAGKGVANPAAQILCVAMMLRFSFGQPEAAAAIEKAVADTIAAGVLTADLASPGAKTVSTSEFGDA 365
                 69************************************************************************998761555677888**********************************99**********************999....6999***************************************************************************************************************.77899**********************************************************************998775 PP

>> TIGR02088  LEU3_arch: isopropylmalate/isohomocitrate dehydrogenases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  289.2   0.0   1.5e-89   8.8e-87       1     323 [.      21     366 ..      21     367 .. 0.90

  Alignments for each domain:
  == domain 1    score: 289.2 bits;  conditional E-value: 1.5e-89
   TIGR02088   1 vavieGdGiGkevieaairiln...ekldlelelieleaGlealkkyGealseetlekikkadailfGavtetaa........psyksvivtlrkeldlyanvrpvkslekiedlea.......knldivivrentedlyagfeieisdtlaiairvitrkgserivkfalelakkrkrkvtivhkanvlkvtdglflevvreiakekg.vevedllvdsaaiklvkdPekfdvivttnvfGdilsdlaaalvGslGlaPsaniGdkkalfePvhGsapdiaGkGianPlaailsvamlldyl.gekekaklveeavekilkekkvtpdlG..G..saktkevadei 323
                 vavi+GdGiG+ev+ +a ++l+   +k++le+el +   G +a++  Ge l++ tl+ + +a ail+G+v+ + +        +s ++ ++ +rk +dl  nvrp+   +++++ ++       k++d+vi+re   ++y g+ + +  ++a+++        +r ++fa+e ak+r++k+t+v kanvl ++ +l+++v +e+a +++ veve ++vd aa++l+++P+ fdvivt+n+fGd+lsd a+ l GslGl+Psa +G ++ ++eP  GsapdiaGkG+anP a il+vam+l+++ g+ e a+ +e+av  ++  + +t dl   G  ++ t+e++d +
  MMETSP1137-20121227|6752_1  21 VAVIPGDGIGPEVMAEATKVLErasSKFGLEFELEHGLVGGAAYDVHGEHLPQVTLDICSRAAAILYGSVGGPVHeqhlpkwhNSERNAVLGMRKAFDLAVNVRPATVYPSLTHASPlrpdivaKGVDLVIIRELLGGIYFGEHRRTMGDVAEDVCTYSVAQIRRPLEFAFEAAKQRRHKLTVVDKANVLDTS-RLWRKVAQEMAPNHPeVEVEYMYVDNAAMQLIQKPSAFDVIVTENLFGDVLSDAASVLPGSLGLMPSASLGSRINMYEPSGGSAPDIAGKGVANPAAQILCVAMMLRFSfGQPEAAAAIEKAVADTIAAGVLTADLAspGakTVSTSEFGDAV 366
                 89*******************999899*******************************************998776667666567799********************99877766556666679*****************9998776667777666677789**************************985.5**********99988*******************************************************************************************8626669999******************962221234566666655 PP

>> TIGR02089  TTC: tartrate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  234.4   0.0   6.5e-73   3.8e-70       4     351 ..      19     369 ..      16     370 .] 0.90

  Alignments for each domain:
  == domain 1    score: 234.4 bits;  conditional E-value: 6.5e-73
   TIGR02089   4 ykiaaiPgdGiGkevvaaalkvleavakksGdlklefeefdwscdyykehGkmmPedgleklkkfdaiflGavGap...aevPd.hislwGlllkirrefeqyinlrPakllpGvk..splknr.gpkdldllvvrenseGeysevGGrifrgedeevaienaiftrkgverilrfafelaqkrrkkltsvtksnaikhsmvfwdevvkevakeypdvevdkqhidalaarlvlkPetldvivasnlfgdilsdlgaalagslGvapsaninpegkfPsmfePvhGsapdiagkgianPiaaiwtaalmleh.lGekeaaaklldalervtaegiktrdv..gGka..ktsevteaviea 351
                  ++a+iPgdGiG+ev+a+a+kvle ++ k G l++e e+   + + y  hG+ +P+  l++  +  ai++G+vG p   +++P  h s    +l +r++f++ +n+rPa + p ++  spl+ +   k +dl+++re   G y +   r       +va +++ ++   + r l fafe a++rr+klt+v k+n    s  +w +v++e+a ++p+vev+ +++d  a +l+ kP  +dviv+ nlfgd+lsd ++ l gslG+ psa +    +   m+eP  Gsapdiagkg+anP a+i   a+ml   +G+ eaaa + +a+  ++a+g++t d+  +G +  +tse ++av++a
  MMETSP1137-20121227|6752_1  19 SRVAVIPGDGIGPEVMAEATKVLERASSKFG-LEFELEHGLVGGAAYDVHGEHLPQVTLDICSRAAAILYGSVGGPvheQHLPKwHNSERNAVLGMRKAFDLAVNVRPATVYPSLThaSPLRPDiVAKGVDLVIIRELLGGIYFGEHRRTMG----DVAEDVCTYSVAQIRRPLEFAFEAAKQRRHKLTVVDKANVLDTS-RLWRKVAQEMAPNHPEVEVEYMYVDNAAMQLIQKPSAFDVIVTENLFGDVLSDAASVLPGSLGLMPSASLG---SRINMYEPSGGSAPDIAGKGVANPAAQILCVAMMLRFsFGQPEAAAAIEKAVADTIAAGVLTADLasPGAKtvSTSEFGDAVMKA 369
                 589****************************.******************************************9833345665477778899********************9965589986525789**************987655554....566667778888999************************98766.79******************************************************************985...5568*******************************9559*************************944344312578888998876 PP

>> TIGR02924  ICDH_alpha: isocitrate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  183.6   0.0   2.6e-57   1.5e-54       3     336 ..      21     369 ..      19     370 .] 0.83

  Alignments for each domain:
  == domain 1    score: 183.6 bits;  conditional E-value: 2.6e-57
   TIGR02924   3 itvayGdGiGPeimeavllilkeaeaei....eietieiGeklykkewssGisesswesikrtkvllkaPittpqGgGh.....ks...lnvtlrkklglyanirPcvsyhpvietk.......ypkldivivreneedlytGieyrltkdtyectkvitrsgsekiiryafeyakknnrkkvtclikdnilkltdGifhkifdkiakeyPdiesehyivdiGaarvakkPekfdvivtenlyGdilsdvvaeisGsvGlaGsaniGeeyamfeavhGsaPdiagknianPsG.llnaaiqmlvyigqkdiaqliynaflktledGvhtadiykekkskkkvgtkefaeavven 336
                 ++v  GdGiGPe+m    ++l++a ++     e+e   +G + y+ + +  + + + +   r+ ++l   +  p  + h     +s     + +rk ++l  n+rP++ y  +++          + +d+vi+re    +y G   r   d+ e     + +   + +++afe ak + r k+t++ k n+l  t  +++k+ +++a ++P++e e++ vd  a ++ +kP +fdvivtenl+Gd+lsd ++ + Gs+Gl  sa +G+   m+e   GsaPdiagk +anP+  +l  a+++    gq + a +i++a   t+  Gv tad+       k v+t ef +av++ 
  MMETSP1137-20121227|6752_1  21 VAVIPGDGIGPEVMAEATKVLERASSKFglefELEHGLVGGAAYDVHGE-HLPQVTLDICSRAAAILYGSVGGPVHEQHlpkwhNSernAVLGMRKAFDLAVNVRPATVYPSLTHASplrpdivAKGVDLVIIRELLGGIYFGEHRRTMGDVAEDVCTYSVAQIRRPLEFAFEAAK-QRRHKLTVVDKANVLD-TSRLWRKVAQEMAPNHPEVEVEYMYVDNAAMQLIQKPSAFDVIVTENLFGDVLSDAASVLPGSLGLMPSASLGSRINMYEPSGGSAPDIAGKGVANPAAqILCVAMMLRFSFGQPEAAAAIEKAVADTIAAGVLTADLASP--GAKTVSTSEFGDAVMKA 369
                 77899*******************9987111145556699999998754.68999***********9987766654433221114411144679**************99655544322111114679***************77777788888777777788899*******776.6799***********9.668**********************************************************************************************972555566666779*************************9765..6799**********986 PP

>> TIGR00175  mito_nad_idh: isocitrate dehydrogenase, NAD-dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  182.4   0.0   4.5e-57   2.6e-54       4     333 ..      19     369 ..      16     370 .] 0.81

  Alignments for each domain:
  == domain 1    score: 182.4 bits;  conditional E-value: 4.5e-57
   TIGR00175   4 ltvtlipGdGiGpeiskavkeifkaa..kvPiefeeid..vs.ieteekksealeeavesi.kknkvaLkGaletpiekg....ehks.ln..valrkeldlyanvvhiksleGlktr........hedvdlviirenteGeysglehevvpGvveslkvitkekseriakyafeyarkngrkkvtavhkanimklaDGLflevakevakkypdikleelivDntclqlvskPeqfdvlvmpnlYGnilsnlaaglvgGaGlvpganvGrdyvvfeegvrntakdiagkdianPtalllssvlmLnh.lglkeyadrikkavletikegkvrtkDlg..G..sattsdfteavikk 333
                   v++ipGdGiGpe++++ +++++ a  k  +efe  +  v     +  + e+l ++   i  +    L G++  p++++     h+s +n  + +rk +dl +nv+++  ++ l            + vdlviire   G y g   + +  v e +     ++ +r  ++afe a+ + r+k+t+v kan++  +  L+++va+e+a + p++++e ++vDn+++ql++kP++fdv+v+ nl+G++ls+ a+ l g +Gl+p+a++G++  ++ e + ++a+diagk +anP+a +l+ ++mL+  +g  e a+ i+kav++ti+ g v t Dl+  G  + +ts+f +av+k 
  MMETSP1137-20121227|6752_1  19 SRVAVIPGDGIGPEVMAEATKVLERAssKFGLEFELEHglVGgAAYDV-HGEHLPQVTLDIcSRAAAILYGSVGGPVHEQhlpkWHNSeRNavLGMRKAFDLAVNVRPATVYPSLTHAsplrpdivAKGVDLVIIRELLGGIYFGEHRRTMGDVAEDVCTYSVAQIRRPLEFAFEAAK-QRRHKLTVVDKANVLDTS-RLWRKVAQEMAPNHPEVEVEYMYVDNAAMQLIQKPSAFDVIVTENLFGDVLSDAASVLPGSLGLMPSASLGSRINMY-EPSGGSAPDIAGKGVANPAAQILCVAMMLRFsFGQPEAAAAIEKAVADTIAAG-VLTADLAspGakTVSTSEFGDAVMKA 369
                 5799*******************9872256778875542255333333.56677776666658899999999886665542222233325521457*************999987643122222224789*************9954455556889999999999**********776.579************976.6***********************************************************************95555.556799***********************965899****************98.68999973323356789999999875 PP

>> TIGR00183  prok_nadp_idh: isocitrate dehydrogenase, NADP-dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.3   0.0   8.6e-12     5e-09      30     172 ..      22     172 ..       9     186 .. 0.80
   2 !   99.9   0.1   5.1e-32     3e-29     256     415 ..     208     369 ..     187     370 .] 0.90

  Alignments for each domain:
  == domain 1    score: 33.3 bits;  conditional E-value: 8.6e-12
   TIGR00183  30 pyieGdGiGvdivpaaikvldaavekaykgekkiawfevyaGekayelygeeeylpedtldaikeykvaikGplttpvGgGi........rslnvalrqeldlyvclrpvryykg..vpspvk...epekvdlvifrentediyaGiewaegseea 172
                   i GdGiG ++++ a+kvl+ a +k +    +    +  +G  ay+++g  e+lp+ tld+  +    + G +  pv +          r   + +r+ +dl v++rp   y+     sp++     + vdlvi re    iy G   +   + a
  MMETSP1137-20121227|6752_1  22 AVIPGDGIGPEVMAEATKVLERASSKFG---LEFELEHGLVGGAAYDVHG--EHLPQVTLDICSRAAAILYGSVGGPVHEQHlpkwhnseRNAVLGMRKAFDLAVNVRPATVYPSltHASPLRpdiVAKGVDLVIIRELLGGIYFGEHRRTMGDVA 172
                 5789*********************998...5666777899*********..9************999999******98753232332226677889*************999862245776522245789*************996555544445 PP

  == domain 2    score: 99.9 bits;  conditional E-value: 5.1e-32
   TIGR00183 256 evit.kalwdklknp..eeGkkivvkdriadallqqiltrpdeydviatmnlnGdylsdalaalvGGlGiapGanigdevaifeathGtapkyaGldkvnpgsvilsgvlllef.lGwkeaadlivkalekaiaskevtydlarlmdgakevkcsefaeaiven 415
                 +v++ + lw k++++  ++  ++ v+ +  d+   q++ +p+ +dvi t nl Gd lsda++ l G lG+ p a +g  + ++e++ G+ap  aG+   np++ il+ +++l+f +G  eaa  i ka+  +ia+ ++t dla    gak+v +sef++a+++ 
  MMETSP1137-20121227|6752_1 208 NVLDtSRLWRKVAQEmaPNHPEVEVEYMYVDNAAMQLIQKPSAFDVIVTENLFGDVLSDAASVLPGSLGLMPSASLGSRINMYEPSGGSAPDIAGKGVANPAAQILCVAMMLRFsFGQPEAAAAIEKAVADTIAAGVLTADLAS--PGAKTVSTSEFGDAVMKA 369
                 444446778888776555666899*****************************************************************************************9679*************************96..699***********9975 PP

>> TIGR00127  nadp_idh_euk: isocitrate dehydrogenase, NADP-dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   0.0   0.00055      0.32     244     293 ..     231     281 ..     218     291 .. 0.87
   2 ?    2.6   0.0     0.015       8.6     355     399 ..     329     366 ..     324     370 .] 0.77

  Alignments for each domain:
  == domain 1    score: 7.3 bits;  conditional E-value: 0.00055
   TIGR00127 244 wyehrliddmvaqalkskggy.ilalknydgdvqsdivaqgfgslglmtsv 293
                   e+  +d+   q+++    + ++   n  gdv sd  +   gslglm s 
  MMETSP1137-20121227|6752_1 231 EVEYMYVDNAAMQLIQKPSAFdVIVTENLFGDVLSDAASVLPGSLGLMPSA 281
                 567788999999999888888688999*********************885 PP

  == domain 2    score: 2.6 bits;  conditional E-value: 0.015
   TIGR00127 355 aeilesatietveegimtkdlalilkksklersayltteefldav 399
                 a ++e+a+ +t+ +g++t dla    k+       ++t ef dav
  MMETSP1137-20121227|6752_1 329 AAAIEKAVADTIAAGVLTADLASPGAKT-------VSTSEFGDAV 366
                 6789*****************9765554.......5555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (370 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       117  (0.0285227); expected 82.0 (0.02)
Passed bias filter:                      100  (0.0243784); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.37u 0.17s 00:00:00.54 Elapsed: 00:00:00.97
# Mc/sec: 503.46
//
Query:       MMETSP1137-20121227|6753_1  [L=383]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (383 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       116  (0.0282789); expected 82.0 (0.02)
Passed bias filter:                      103  (0.0251097); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.19s 00:00:00.48 Elapsed: 00:00:00.54
# Mc/sec: 936.14
//
Query:       MMETSP1137-20121227|6754_1  [L=504]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   3.1e-161  535.0  10.7   3.5e-161  534.8   7.4    1.0  1  TIGR01350 lipoamide_DH: dihydrolipoyl dehydrogenase
   5.3e-103  343.3   4.7   6.5e-103  343.0   3.3    1.0  1  TIGR02053 MerA: mercuric reductase
    7.6e-72  240.1   5.0    9.5e-72  239.8   3.5    1.0  1  TIGR01424 gluta_reduc_2: glutathione-disulfide reductase
    5.7e-67  224.7   4.9      7e-67  224.4   3.4    1.0  1  TIGR01421 gluta_reduc_1: glutathione-disulfide reductase
    3.1e-58  195.6   3.2    3.9e-58  195.3   2.2    1.0  1  TIGR01438 TGR: thioredoxin and glutathione reductase
    1.3e-57  193.5   1.7    2.1e-57  192.8   1.1    1.3  1  TIGR03452 mycothione_red: mycothione reductase
      1e-46  157.3   4.1    1.3e-46  156.9   2.9    1.0  1  TIGR01423 trypano_reduc: trypanothione-disulfide reductase
      2e-22   77.2   2.3      2e-22   77.2   1.6    1.6  2  TIGR02374 nitri_red_nirB: nitrite reductase [NAD(P)H], large subunit
    2.6e-22   77.0   0.7    2.6e-22   77.0   0.5    2.3  1  TIGR03385 CoA_CoA_reduc: CoA-disulfide reductase
    1.1e-14   51.7   9.3    5.3e-11   39.7   0.3    3.0  3  TIGR01292 TRX_reduct: thioredoxin-disulfide reductase
    1.2e-14   51.7   3.4    1.6e-10   38.1   0.0    2.2  2  TIGR04018 Bthiol_YpdA: putative bacillithiol system oxidoreductase, YpdA family
    9.7e-14   48.8   3.7    3.5e-09   33.8   0.5    3.3  2  TIGR01316 gltA: glutamate synthase (NADPH), homotetrameric
    2.8e-13   47.1   3.9    5.6e-07   26.3   0.0    3.8  4  TIGR01318 gltD_gamma_fam: glutamate synthase, small subunit
    9.4e-13   45.9   2.5    2.5e-10   37.9   0.1    3.0  3  TIGR03169 Nterm_to_SelD: pyridine nucleotide-disulfide oxidoreductase family protein
    1.1e-12   45.1  10.6    1.3e-09   35.0   7.4    2.3  1  TIGR03140 AhpF: alkyl hydroperoxide reductase, F subunit
    7.4e-11   39.4   1.9    2.1e-05   21.4   0.0    3.4  3  TIGR01317 GOGAT_sm_gam: glutamate synthase, NADH/NADPH, small subunit
    1.2e-10   37.3   2.8     0.0013   14.0   0.0    3.1  3  TIGR03315 Se_ygfK: putative selenate reductase, YgfK subunit
    2.7e-10   37.1   8.9    2.4e-06   24.0   0.2    2.6  3  TIGR03997 mycofact_OYE_2: mycofactocin system FadH/OYE family oxidoreductase 2
    1.3e-06   25.6   3.7    7.6e-06   23.2   0.1    2.4  2  TIGR00292 TIGR00292: thiazole biosynthesis enzyme
    5.4e-06   23.4   1.8     0.0014   15.4   0.1    2.1  2  TIGR00031 UDP-GALP_mutase: UDP-galactopyranose mutase
    1.6e-05   22.6   8.4    4.5e-05   21.1   0.1    3.4  4  TIGR02032 GG-red-SF: geranylgeranyl reductase family
    5.7e-05   19.7   2.9      0.066    9.6   0.5    2.7  2  TIGR03143 AhpF_homolog: putative alkyl hydroperoxide reductase F subunit
    0.00014   18.6  20.5       0.02   11.6   2.9    4.0  4  TIGR00275 TIGR00275: flavoprotein, HI0933 family
    0.00038   17.7   1.1    0.00038   17.7   0.8    3.1  3  TIGR03467 HpnE: squalene-associated FAD-dependent desaturase
    0.00049   15.8   1.7    0.00049   15.8   1.2    2.5  2  TIGR01372 soxA: sarcosine oxidase, alpha subunit family
    0.00062   16.7  10.9     0.0022   14.9   0.1    2.9  3  TIGR03364 HpnW_proposed: FAD dependent oxidoreductase TIGR03364
    0.00075   15.9   9.5      0.026   10.8   0.5    2.4  2  TIGR03996 mycofact_OYE_1: mycofactocin system FadH/OYE family oxidoreductase 1
    0.00085   15.4   3.2    0.00097   15.2   0.7    2.1  2  TIGR01816 sdhA_forward: succinate dehydrogenase, flavoprotein subunit
     0.0015   15.1  14.4       0.16    8.4   2.0    3.2  3  TIGR02733 desat_CrtD: C-3',4' desaturase CrtD
     0.0036   14.2   0.4     0.0066   13.3   0.3    1.4  1  TIGR02023 BchP-ChlP: geranylgeranyl reductase
     0.0037   14.3   1.3     0.0037   14.3   0.9    2.1  2  TIGR01790 carotene-cycl: lycopene cyclase family protein
     0.0048   13.4  20.4     0.0052   13.3   3.5    2.8  3  TIGR02734 crtI_fam: phytoene desaturase
  ------ inclusion threshold ------
      0.052   10.0   3.6        2.8    4.3   0.0    3.6  4  TIGR00551 nadB: L-aspartate oxidase
       0.17    7.9   2.8       0.74    5.9   0.2    2.1  2  TIGR00136 gidA: tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
       0.27    7.8   4.1        1.3    5.6   0.4    2.3  2  TIGR01984 UbiH: 2-polyprenyl-6-methoxyphenol 4-hydroxylase
       0.39    6.9   5.9       0.19    7.9   0.9    2.4  2  TIGR01812 sdhA_frdA_Gneg: succinate dehydrogenase or fumarate reductase, flavoprotein subunit
       0.43    7.3  10.3      0.023   11.5   1.3    2.8  4  TIGR03378 glycerol3P_GlpB: glycerol-3-phosphate dehydrogenase, anaerobic, B subunit
        1.2    5.8  10.6      0.072    9.8   0.2    3.2  4  TIGR00518 alaDH: alanine dehydrogenase
        2.4    4.7   7.9       0.16    8.5   1.2    2.0  2  TIGR01988 Ubi-OHases: ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family


Domain annotation for each model (and alignments):
>> TIGR01350  lipoamide_DH: dihydrolipoyl dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  534.8   7.4  3.3e-163  3.5e-161       1     455 [.      37     497 ..      37     504 .] 0.95

  Alignments for each domain:
  == domain 1    score: 534.8 bits;  conditional E-value: 3.3e-163
   TIGR01350   1 eydvvviGgGpgGYvaAiraaqlglkvalvek.eklGGtClnvGCiPtKalLksaevveelke.akelgievenvkldlekllerkekvvkklvgGvkaLlkknkvevikGeaklldkkevevkkekke.kkleakniiiAtGseprelplkleedekvvitseealelkevpeslvivGgGviGvEfasifaklGvkvtvielldril.paldaevskvlkkklkkkgvkiltnakvtevekee.devv..veakkk.evetleaekvLvavGrkpnleelgleklgveldergaikvdeelrtnvpgiyaiGDvigklmLAhvAskegvvaaekiagkekseidykavPsviytePevasvGlteeqakeegievkvgkfpfaangkalaleetdGfvkvivdkktgeilGahivgaeaseliselalaveleltveelaktihpHPtlsEaikeaalaal 455
                 ++dvvv+GgGpgGY  Ai+ aq+glkva++ek   lGGtClnvGCiP+K+lL+++++++ +k+ ++  giev+++kl+l+k++ +kek vk l+gG+++L+kkn+v+ ikG +k+++ ++v+v+  ++  ++++a++i++AtGse++ +p+ +e de+ ++ts++al+lk+vp+++v++GgGviG+E++s++++lG++vtv+e+l  +  + +d evsk+  + lkk+g+k++ ++kvt v+k++   v+  +ea+k+  +e ++a+ vL+++Gr+p l   gl  +gv+l+er+++ vde+++tnvp+iyaiGD+i+++mLAh+A++eg +  e +a   + ++dy++vPsv+yt+Peva +G++e+q+k+eg++++ gkfpfaan++a +++etdGfvkv++dk t++ilG+hi+ ++a e+i+e+ la+e ++++e++a+++h+HPtl+Ea+k a++ a+
  MMETSP1137-20121227|6754_1  37 KFDVVVVGGGPGGYAGAIKGAQMGLKVACIEKrGALGGTCLNVGCIPSKSLLHNSHLYHMAKTeFSMRGIEVSDIKLNLDKMMSEKEKSVKGLTGGIEMLFKKNGVTYIKGAGKITGTNQVSVDLLDGGqQVVSADKIVLATGSEVTPFPG-VEIDEEAIVTSTGALSLKSVPKKMVVIGGGVIGLELGSVWERLGAEVTVVEFLGAVGgAGMDPEVSKTFLQILKKQGIKFKLSTKVTGVTKKSgGGVTvgTEASKDgSKEDIDADVVLMCIGRRPVLP-PGLSDVGVKLTERNQVIVDEHFKTNVPSIYAIGDIIHGPMLAHKAEDEGGLLMESFATGGEPHLDYNLVPSVVYTSPEVAWIGKNEDQLKAEGVDYAKGKFPFAANSRAKTVNETDGFVKVLTDKATDKILGVHIINQQAGEMIHEACLAMEYGASSEDMARVCHAHPTLTEALKGACQIAS 497
                 59******************************889***************************99***********************************************************9876554999******************.********************************************************7357***************************66665515666664544545789*****************9.9******************************************************99666669******************************************************************************************************************98653 PP

>> TIGR02053  MerA: mercuric reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  343.0   3.3  6.2e-105  6.5e-103       1     451 [.      38     494 ..      38     501 .. 0.94

  Alignments for each domain:
  == domain 1    score: 343.0 bits;  conditional E-value: 6.2e-105
   TIGR02053   1 ydlviiGsGaaafaaaikaaelgakvvlve.rGilGGtCvnvGCvPSKallraaevaklakkas..vgllaaevevdleelleqkkevveelRkeKYedvlesydavdllegkakfkdektvkvdl...gkevvgakrvliAtGarpavPeipG..LkeaeyltseelleldkipeslvviGggaiavElaqlfarlGsevtllqrserll.keeepeisaaveellaeeGvevvksakvkavskrnggkklvtve..kndskkeveadellvAtGRkpnvdgLnLekvgvklderGeilvdeklrtsnpkiyAAGDvikglqlesvAakeGvvaAenalggaeakldlevlPkvvFtdPevAsvGlteeelakagievesrtvkleavpralinretrGliKlvaeketkkvlgvqvvaeeAaevineaalaikagltvddlidtlhvfltmaEglklAAl 451
                 +d+v++G+G ++ a aik a++g kv+ +e rG lGGtC nvGC+PSK ll++++++++ak ++   g+  ++++++l++++++k++ v+ l     +++l + ++v +++g +k+++ ++v+vdl   g++vv+a+++++AtG+  +  + pG  ++e  ++ts+ +l+l+ +p+++vviGgg+i++El+ +++rlG evt+++   ++     +pe+s++  ++l+++G+++  s+kv+ v k+ gg+++v +e  k++sk++++ad +l+  GR+p++   +L+ vgvkl er +++vde+ +t+ p+iyA GD+i+g++l + A  eG +  e    g+e +ld++ +P+vv+t+PevA +G  e++l+ +g++++    +  a +ra++ +et G++K+ ++k t k+lgv+++ ++A+e+i+ea la++ g+  +d+++ +h ++t++E+lk A +
  MMETSP1137-20121227|6754_1  38 FDVVVVGGGPGGYAGAIKGAQMGLKVACIEkRGALGGTCLNVGCIPSKSLLHNSHLYHMAKTEFsmRGIEVSDIKLNLDKMMSEKEKSVKGLTGG--IEMLFKKNGVTYIKGAGKITGTNQVSVDLldgGQQVVSADKIVLATGSEVT--PFPGveIDEEAIVTSTGALSLKSVPKKMVVIGGGVIGLELGSVWERLGAEVTVVEFLGAVGgAGMDPEVSKTFLQILKKQGIKFKLSTKVTGVTKKSGGGVTVGTEasKDGSKEDIDADVVLMCIGRRPVLP-PGLSDVGVKLTERNQVIVDEHFKTNVPSIYAIGDIIHGPMLAHKAEDEGGLLMESFATGGEPHLDYNLVPSVVYTSPEVAWIGKNEDQLKAEGVDYAKGKFPFAANSRAKTVNETDGFVKVLTDKATDKILGVHIINQQAGEMIHEACLAMEYGASSEDMARVCHAHPTLTEALKGACQ 494
                 59***************************847*****************************98887789999*******************9754..566666668*******************9999***************9754..45661157888********************************************9987752689************************************99887225678999****************9.7****************************************************999999********************************************************************************************************************9976 PP

>> TIGR01424  gluta_reduc_2: glutathione-disulfide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  239.8   3.5     9e-74   9.5e-72       3     442 ..      38     489 ..      36     491 .. 0.90

  Alignments for each domain:
  == domain 1    score: 239.8 bits;  conditional E-value: 9e-74
   TIGR01424   3 ydlfviGaGsGGvraarlaaalGakvaiaeed.lvGGtcvirGcvPkkllvyasefaeeleda.kgyGwevekaefdwkkllakkdkeiarlsglykkllakagvellegraelvdantvevle.dgk..tytaekiliavGgrpvkpelPGael....aitsdeafdletlPksilvvGgGyiavefagifrGlGvkvtll.yrgekilrgfdddvraelaeeleerGirillktvlksiekvddG.lkvtls.....kdeeivadvvllatGrvPnvkglgleaaGvelndagaiavdeysrtsvpsiyavGdvtdrinltPvaikeaaafaetefknnptkadhdlvatavfsqPevatvGlseeearekftddievyraefrPmkatlsGrqekillklvvdekddkvlGahvvGedaaeiiqlvaialkaGatkkdfdstvavhPssaeel 442
                 +d+ v+G+G GG + a   a++G kva  e+   +GGtc+  Gc+P k l++ s++ +  ++     G ev + +++ +k++++k+k ++ l g    l++k gv  ++g +++ ++n+v v   dg    ++a+ki++a+G+  +   +PG e+     +ts  a++l+++Pk+++v+GgG i+ e+ ++++ lG++vt + + g+    g+d +v ++  + l+++Gi+  l t ++ ++k++ G + v +      ++e+i advvl+ +Gr P     gl ++Gv+l +++ ++vde+ +t+vpsiya+Gd+     l+  a  e+  ++e+  ++   + d++lv + v++ Peva +G  e++ +++   d    + +f     + + ++   ++k++ d+++dk+lG+h++ ++a+e+i  +++a+  Ga+ +d+ + +  hP+++e l
  MMETSP1137-20121227|6754_1  38 FDVVVVGGGPGGYAGAIKGAQMGLKVACIEKRgALGGTCLNVGCIPSKSLLHNSHLYHMAKTEfSMRGIEVSDIKLNLDKMMSEKEKSVKGLTGGIEMLFKKNGVTYIKGAGKITGTNQVSVDLlDGGqqVVSADKIVLATGSEVT--PFPGVEIdeeaIVTSTGALSLKSVPKKMVVIGGGVIGLELGSVWERLGAEVTVVeFLGAVGGAGMDPEVSKTFLQILKKQGIKFKLSTKVTGVTKKSGGgVTVGTEaskdgSKEDIDADVVLMCIGRRPVL-PPGLSDVGVKLTERNQVIVDEHFKTNVPSIYAIGDIIHGPMLAHKAEDEGGLLMESFATGGEPHLDYNLVPSVVYTSPEVAWIGKNEDQLKAEG-VDYAKGKFPFAANSRAKTVNETDGFVKVLTDKATDKILGVHIINQQAGEMIHEACLAMEYGASSEDMARVCHAHPTLTEAL 489
                 9**************************99986369********************9887776515679***************************************************99876644334789*********9863..4777654222268***************************************9857899999*********************************99986555443345556799**************76.569*****************************************************9999999*********************9998876665.444455556666666667777788*****************************************************9976 PP

>> TIGR01421  gluta_reduc_1: glutathione-disulfide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  224.4   3.4   6.7e-69     7e-67       2     446 ..      37     489 ..      36     491 .. 0.91

  Alignments for each domain:
  == domain 1    score: 224.4 bits;  conditional E-value: 6.7e-69
   TIGR01421   2 eydylviGGGsGGiasarraaeyGakallveek.klGGtcvnvGcvPkkvmwyaaslaelle.daadyGfksekenkfnfkelkekrdayvdrlngiyqknlekekvelieGyaeftkdetvevngke.....ytakhiliatGgkpsipeniPGael....gldsdgffaleelPkrvvivGaGyiavelaGvlhglGsktdlv.irrervlrsfdelisekvveelekaglevhklskvvkvektvegklvitledg....keiedvdeliwaiGrkpntkdlglekvgvkldekgyikvdeyqntnvegiyalGdvvGkveltPvaiaaGrklserlfegkedakldyenvPtvvfshPeigtvGltekeaiekyGkenvkvykssftamyyaltkekqksrlklvcagkeekvvGlhiiGlgvdellqGfavaikmGatkadfdntvaihPtsseel 446
                 ++d++v+GGG GG a a + a++G k++ +e++ +lGGtc+nvGc+P k + + ++l ++ + + +  G+++++ + +n  ++  ++++ v+ l g  +  ++k+ v  i+G  + t+ ++v+v+  +     ++a++i++atG++ +     PG e+     ++s g + l+ +Pk++v++G G i++el  v + lG++  +v + +     ++d  +s++  + l+k+g++ +  +kv+ v k+  g +++  e++    ke  d+d ++++iGr+p +   gl +vgvkl e+++++vde+  tnv++iya+Gd++    l+  a   G  l e  f +  + +ldy+ vP+vv++ Pe++ +G  e++ ++  G +  k  k  f+a   a t + ++  +k+++    +k++G+hii + + e++   ++a+  Ga+  d+  +   hPt +e l
  MMETSP1137-20121227|6754_1  37 KFDVVVVGGGPGGYAGAIKGAQMGLKVACIEKRgALGGTCLNVGCIPSKSLLHNSHLYHMAKtEFSMRGIEVSDIK-LNLDKMMSEKEKSVKGLTGGIEMLFKKNGVTYIKGAGKITGTNQVSVDLLDggqqvVSADKIVLATGSEVTPF---PGVEIdeeaIVTSTGALSLKSVPKKMVVIGGGVIGLELGSVWERLGAEVTVVeFLGAVGGAGMDPEVSKTFLQILKKQGIKFKLSTKVTGVTKKSGGGVTVGTEASkdgsKEDIDADVVLMCIGRRP-VLPPGLSDVGVKLTERNQVIVDEHFKTNVPSIYAIGDIIHGPMLAHKAEDEGGLLMES-FATGGEPHLDYNLVPSVVYTSPEVAWIGKNEDQ-LKAEGVDYAKG-KFPFAANSRAKTVNETDGFVKVLTDKATDKILGVHIINQQAGEMIHEACLAMEYGASSEDMARVCHAHPTLTEAL 489
                 69*****************************9758**********************9999967778899999665.**********************************************98655566679**********986544...555441111579************************************87762666667789*********************************99999888887666688899***********8.567799**********************************************999886.77778899********************99987.78889999985.788*******************************************************************99875 PP

>> TIGR01438  TGR: thioredoxin and glutathione reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  195.3   2.2   3.7e-60   3.9e-58       2     465 ..      37     489 ..      36     502 .. 0.88

  Alignments for each domain:
  == domain 1    score: 195.3 bits;  conditional E-value: 3.7e-60
   TIGR01438   2 dydliviGgGsGGlaaakeaaklgakvllldfvkptpqGtkwGiGGtcvnvGcipkklmhqaallGkalk.dskkyGwnveeqvkhdweklskavqdrikslnfsyrvalrekkvkyinayaelvdkdvikatdkkkkeeilsakrvliatGlrpkypddieGakelsitsddlfslkkvpGktlvvGasyvalecaGflaalgldvtvl..vrsillrGfdqdcavkvkeylkeqGvkfkeqvlpkkvekvea.kvlvkftdkdntieee..ydtvlyaiGrkadlkklnlenvgvkvnkksgkiladelertnvpsiyavGdivedkleltpvaikaGklladrlfkdskeivdyenvpttvftpleygavGlseekavekyGeenvevfhseftpleysvpsrkdsskcyakvvclkdedervvGlhfvGpnagevtqGfavalrvgvkkkdldntigihpvsaeef 465
                 ++d++v+GgG+GG a a + a++g kv+ ++        ++  +GGtc nvGcip k + + ++l ++ k +    G +v++ +k + +k++ + ++ +k l  +  + ++++ v+yi + +++ + ++++     + ++++sa+++++atG        +e + e  +ts   +slk+vp k +v+G++ + le     + lg +vtv+  + ++   G+d ++ +   + lk+qG+kfk   +++ v+k     v v    ++++ +e+   d vl+ iGr++ l   +l +vgvk+ +++ ++++de  +tnvpsiya+Gdi+++ + l+  a   G ll + + ++ +  +dy+ vp+ v+t  e + +G  e++       e v+  + +f     s ++  +++  ++kv+   +  ++++G+h++   age++    +a+  g + +d+  +   hp+ +e +
  MMETSP1137-20121227|6754_1  37 KFDVVVVGGGPGGYAGAIKGAQMGLKVACIE--------KRGALGGTCLNVGCIPSKSLLHNSHLYHMAKtEFSMRGIEVSD-IKLNLDKMMSEKEKSVKGLTGGIEMLFKKNGVTYIKGAGKITGTNQVSVDLLDGGQQVVSADKIVLATGSEVTPFPGVEIDEEAIVTSTGALSLKSVPKKMVVIGGGVIGLELGSVWERLGAEVTVVefLGAVGGAGMDPEVSKTFLQILKKQGIKFKLSTKVTGVTKKSGgGVTVGTEASKDGSKEDidADVVLMCIGRRPVLP-PGLSDVGVKLTERN-QVIVDEHFKTNVPSIYAIGDIIHG-PMLAHKAEDEGGLLMESFATGGEPHLDYNLVPSVVYTSPEVAWIGKNEDQL----KAEGVDYAKGKFPFAANSRAKTVNETDGFVKVLTD-KATDKILGVHIINQQAGEMIHEACLAMEYGASSEDMARVCHAHPTLTEAL 489
                 8**************************9987........4668************875555566666666589999*****9.*********************************************************************98664446************************************************97446788899***********************9999999886653555655555556666511578*********886.59********9986.577888889*************98.67*******************************************988753....4566777777887666777777778889***8765.56789****************************************99975 PP

>> TIGR03452  mycothione_red: mycothione reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  192.8   1.1     2e-59   2.1e-57       2     447 ..      37     491 ..      36     494 .. 0.85

  Alignments for each domain:
  == domain 1    score: 192.8 bits;  conditional E-value: 2e-59
   TIGR03452   2 hydliiiGtGsGn...silderfedkriaivekGtfGGtclnvGciptkmfvyaaevakevke.sarlgidaeidsvrwpdivsrvfedridpiaasGeeyrrgdktpnidvyesharfvgrktlrte..dgee..itadqvviaaGsrpvipeaiaesgvryytnedimrlpelpeslvivGgGyialefahvfsalGtkvtlvar.sekllrkldediserftelakkk.fdvrlgrnvtaaeqdddg.vtleld...dGs..tveadvllvatGrvpngdlldaeaaGvevdedgrvkvdeyqrtsaegvfalGdvsspyqlkhvanaearvvkhnllkdedlkkadhdfvpaavftdpqiatvGlteqeareaGlditvkvqdygdvayGwamedteglakliadkdtGkllGahiiGaqassliqqlitalafgldarelarkqywihpalpevven 447
                 ++d++++G G G    +i + ++  k   i ++G++GGtclnvGcip+k  ++ +++ +  k+  +  gi+ +  +++ ++++s   +  +  ++ + e   +++    ++  +   + +g+++++++  dg +  ++ad++v+a+Gs  +  + ++  +    t+   + l+ +p+++v++GgG+i le+  v++ lG++vt+v   + +  + +d ++s++f ++ kk+ ++ +l+++vt++++++ g vt+ ++   dGs  +++adv+l+ +Gr p      ++  Gv+++e ++v+vde+ +t + +++a+Gd+    +l h a+ e   + + +++  +  + d++ vp+ v+t p +a +G  e++ +++G d +     ++  +   ++++t+g++k+++dk t k+lG hii +qa  +i +   a+ +g +++++ar     hp+l+e ++ 
  MMETSP1137-20121227|6754_1  37 KFDVVVVGGGPGGyagAIKGAQMGLKVACIEKRGALGGTCLNVGCIPSKSLLHNSHLYHMAKTeFSMRGIEVSDIKLNLDKMMSEKEK-SVKGLTGGIEMLFKKN---GVTYIKGAGKITGTNQVSVDllDGGQqvVSADKIVLATGSEVTPFPGVEIDEEAIVTSTGALSLKSVPKKMVVIGGGVIGLELGSVWERLGAEVTVVEFlGAVGGAGMDPEVSKTFLQILKKQgIKFKLSTKVTGVTKKSGGgVTVGTEaskDGSkeDIDADVVLMCIGRRPVLP-PGLSDVGVKLTERNQVIVDEHFKTNVPSIYAIGDIIHGPMLAHKAEDEGGLLMESFATGGE-PHLDYNLVPSVVYTSPEVAWIGKNEDQLKAEGVDYAKGKFPFAANSRAKTVNETDGFVKVLTDKATDKILGVHIINQQAGEMIHEACLAMEYGASSEDMARVC-HAHPTLTEALKG 491
                 79*******998533367777777666666668***********************99876541455577766666666666665433.5666655555544444...78888889999988887775334444579************999999988899999*****************************************87245556889**********987764899********99887766*998763336753369***********99765.478999************************************************9998765.6799*******************************9999999999999****************************************************975.69*****98765 PP

>> TIGR01423  trypano_reduc: trypanothione-disulfide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  156.9   2.9   1.3e-48   1.3e-46       3     468 ..      37     490 ..      35     501 .. 0.83

  Alignments for each domain:
  == domain 1    score: 156.9 bits;  conditional E-value: 1.3e-48
   TIGR01423   3 aydlvvigagsggleagwnaaslykkrvavvdlqkvhgppfyaalggtcvnvgcvpkklmvtgaqymd.tlresagfgweldaesvkanwkaliaaknkavldindsyedmfkdteglefflgfgaledknvvlvresadpkskvkerldaeyillatgswpq.mlkiegiel.cissneafyleeapkrvltvgggyisvefagifnaykavggkvdla.yrndmilrgfdselrkeltkqlvangidvrtnenpakveknadgskhvvfesgk.....eldvdvvmlaigrlprsqtlqldkvgveladkgaikvdeysktnvdniyaigdvtdrvmltpvainegaavvdtvfaskprktdhtkvasavfsippigvcglveeeaakkyekvavyessftplmhnisgskyk..kfvvkivtdhadgevlgvhllgdsspeiiqavaiclklnakisdfyntigvhptsaeelc 468
                  +d+vv+g g gg     + a +   +va ++ +         alggtc+nvgc+p k ++  ++       e +  g  ++ + +k n   +++ k+k+v ++    e +fk  +g+++ +g g +   n v v    d     ++ + a+ i+latgs      ++e +e   ++s  a+ l+  pk+++++ggg i +e+  +++     g +v+++ + + +   g+d e+ k + + l+ +gi+ +   + + v+k++ g   v  e+ k     ++d dvv+++igr p      l  vgv+l+++  + vde+ ktnv+ iyaigd+    ml+  a +eg  ++++  +    + d+  v s v++ p +   g  e++   k e v  y     p+  n    + +     vk++td+a  ++lgvh++ + + e+i   ++++  +a   d+      hpt +e l 
  MMETSP1137-20121227|6754_1  37 KFDVVVVGGGPGGYAGAIKGAQMG-LKVACIEKR--------GALGGTCLNVGCIPSKSLLHNSHLYHmAKTEFSMRG--IEVSDIKLNLDKMMSEKEKSVKGLTGGIEMLFKK-NGVTYIKGAGKITGTNQVSVDL-LD---GGQQVVSADKIVLATGSEVTpFPGVEIDEEaIVTSTGALSLKSVPKKMVVIGGGVIGLELGSVWE---RLGAEVTVVeFLGAVGGAGMDPEVSKTFLQILKKQGIKFKLSTKVTGVTKKSGGGVTVGTEASKdgskeDIDADVVLMCIGRRPVLP-PGLSDVGVKLTERNQVIVDEHFKTNVPSIYAIGDIIHGPMLAHKAEDEGGLLMESFATGGEPHLDYNLVPSVVYTSPEVAWIGKNEDQL--KAEGVD-YAKGKFPFAANSRAKTVNetDGFVKVLTDKATDKILGVHIINQQAGEMIHEACLAMEYGASSEDMARVCHAHPTLTEALK 490
                 59***********98777777765.558887643........59************9988776654440444545555..56789***********************999985.8************999998743.34...44555789*********765145777765516799*************************99876...567777765367888899***********************************99999988654222226899**********9765.5799**************************************************9988888899*******************987765..345554.444455777776665554114579**************************************************999885 PP

>> TIGR02374  nitri_red_nirB: nitrite reductase [NAD(P)H], large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.1       1.3   1.4e+02     141     172 ..      38      69 ..      26      76 .. 0.82
   2 !   77.2   1.6   1.9e-24     2e-22      52     277 ..     125     350 ..     108     355 .. 0.79

  Alignments for each domain:
  == domain 1    score: -1.6 bits;  conditional E-value: 1.3
   TIGR02374 141 kkaaviGgGLLGLeaaraLknlGldvsviela 172
                  + +v+GgG  G   a    ++Gl+v  ie  
  MMETSP1137-20121227|6754_1  38 FDVVVVGGGPGGYAGAIKGAQMGLKVACIEKR 69 
                 4679*********9999999******999865 PP

  == domain 2    score: 77.2 bits;  conditional E-value: 1.9e-24
   TIGR02374  52 dledltLnskdyyekhgikllvnervik.idreeksvitdagrtlsyDkLilatGsypfilPipGaDkkgvfvyrtieDldaleaaakrtkkaaviGgGLLGLeaaraLknlGldvsvielapllmakqlDqtagrlLqrelekkGltvlleketveivkes..vekaerlrfkDGss..leadlvvlaaGirPrdeLa.aeaGlkvndrrGiivndsmqtsdPdiyavGec 277
                 +++ lt   +  ++k+g++ + +   i+  ++ +  ++   ++++s Dk++latGs   + P pG +  +         + al +     kk +viGgG++GLe  +  ++lG +v v+e+   +    +D   ++ + + l+k+G++++l+++   ++k+s  + ++ +   kDGs+  ++ad+v++++G rP    +  + G+k+++r  +iv+++ +t+ P iya+G++
  MMETSP1137-20121227|6754_1 125 SVKGLTGGIEMLFKKNGVTYIKGAGKITgTNQVSVDLLDGGQQVVSADKIVLATGSE--VTPFPGVEIDEEAIV---TSTGAL-SLKSVPKKMVVIGGGVIGLELGSVWERLGAEVTVVEFLGAVGGAGMDPEVSKTFLQILKKQGIKFKLSTKVTGVTKKSggGVTVGTEASKDGSKedIDADVVLMCIGRRPVLPPGlSDVGVKLTERNQVIVDEHFKTNVPSIYAIGDI 350
                 5555555556666777777666654443144444455566778899**********7..899999987665432...334444.333445788***********************************************************9999999998545567778899**7444**************998772579***************************97 PP

>> TIGR03385  CoA_CoA_reduc: CoA-disulfide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.0   0.5   2.5e-24   2.6e-22     146     420 ..     205     478 ..     154     484 .. 0.80

  Alignments for each domain:
  == domain 1    score: 77.0 bits;  conditional E-value: 2.5e-24
   TIGR03385 146 kkkvekvvviGgGyiglemvealkergkevtliersekilnkllDeeiakiveeelekkeielrlneevksvegeek..ve....vltsgkv..yqaDlvilavGvkPnse.likssqlklgkkGaikvnekfqtsveniyaiGDvaesknivtkkeelvPlAwaanklgsivaenia.GkdiefkGvlGtsivkfldltiaktGltenelkklnidyktve..vkakakanYYPgakdlllklivekdtkkilgaqavGkegvlkRidvlaaaikakltvkdltel 420
                 k+  +k+vviGgG igle+    ++ g evt++e    +    +D e++k   + l+k++i+++l  +v+ v  +    v       ++g++  ++aD+v++ +G +P     + + ++kl+++  ++v+e+f+t+v+ iyaiGD++              lA  a+  g ++ e  a G + +    l  s+v   + ++a +G +e++lk +++dy   +    a+++a+   +++d ++k++ +k t kilg+ ++ ++ + + i+ + +a++ ++  +d++ +
  MMETSP1137-20121227|6754_1 205 KSVPKKMVVIGGGVIGLELGSVWERLGAEVTVVEFLGAVGGAGMDPEVSKTFLQILKKQGIKFKLSTKVTGVTKKSGggVTvgteASKDGSKedIDADVVLMCIGRRPVLPpGLSDVGVKLTERNQVIVDEHFKTNVPSIYAIGDIIHGPM----------LAHKAEDEGGLLMESFAtGGEPHLDYNLVPSVV-YTSPEVAWIGKNEDQLKAEGVDYAKGKfpFAANSRAKT-VNETDGFVKVLTDKATDKILGVHIINQQ-AGEMIHEACLAMEYGASSEDMARV 478
                 3456899***************************************************************9987643112211224466655115678999*******875258889*****************************97654..........677787777777776652557777777777776.6789******************9876511577888876.58999********************988.9999**********9999998765 PP

>> TIGR01292  TRX_reduct: thioredoxin-disulfide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.7   6.8e-06   0.00072       2      35 ..      39      72 ..      38      82 .. 0.88
   2 !   39.7   0.3   5.1e-13   5.3e-11     141     276 ..     208     352 ..     145     366 .. 0.78
   3 ?   -2.7   0.0         4   4.2e+02     221     269 ..     400     449 ..     398     471 .. 0.67

  Alignments for each domain:
  == domain 1    score: 16.3 bits;  conditional E-value: 6.8e-06
   TIGR01292  2 dviiiGaGpaGltaaiYaaranlktlliegkeag 35
                dv+++G+Gp+G++ ai +a+++lk+++ie+  a 
  MMETSP1137-20121227|6754_1 39 DVVVVGGGPGGYAGAIKGAQMGLKVACIEKRGAL 72
                9***************************986554 PP

  == domain 2    score: 39.7 bits;  conditional E-value: 5.1e-13
   TIGR01292 141 nkevavvGggdsAveealyLskiakkVtlvhrrdkl.......raekillerlkknekievllnstveeikGde.kvesvkikntktkeeeelkvdgvFiaiGhepntel.lkel.leldeegyivvdeemrTsveGvfaaGDvrd 276
                  k+++v+Ggg   +e   + ++++ +Vt+v     +         +k++l+ + k++ i++ l+++v+ ++ ++    +v  +  k++++e++++d v + iG +p     l++  ++l+e++ ++vde+ +T+v+ ++a GD+ +
  MMETSP1137-20121227|6754_1 208 PKKMVVIGGGVIGLELGSVWERLGAEVTVVEFLGAVggagmdpEVSKTFLQ-ILKKQGIKFKLSTKVTGVTKKSgGGVTVGTEASKDGSKEDIDADVVLMCIGRRPVLPPgLSDVgVKLTERNQVIVDEHFKTNVPSIYAIGDIIH 352
                 5899**************************866544111111123344444.45566*************999976678999999*********************8765367779***************************976 PP

  == domain 3    score: -2.7 bits;  conditional E-value: 4
   TIGR01292 221 eeeelkvdgvFiaiGhepntellkelleldeegyivvdeemrT.sveGvf 269
                 +e +lk++gv +a G  p  +  + +   +++g+++v +   T ++ Gv+
  MMETSP1137-20121227|6754_1 400 NEDQLKAEGVDYAKGKFPFAANSRAKTVNETDGFVKVLTDKATdKILGVH 449
                 56677788888888887777777777666677787776664442455554 PP

>> TIGR04018  Bthiol_YpdA: putative bacillithiol system oxidoreductase, YpdA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   0.8   4.3e-05    0.0045       1      31 [.      39      69 ..      39      78 .. 0.93
   2 !   38.1   0.0   1.6e-12   1.6e-10     108     291 ..     165     353 ..     141     365 .. 0.83

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 4.3e-05
   TIGR04018  1 dviiiGaGPiGlaaaieakkaglsyliiekg 31
                dv+++G+GP G a ai+  + gl++  iek 
  MMETSP1137-20121227|6754_1 39 DVVVVGGGPGGYAGAIKGAQMGLKVACIEKR 69
                89***************************95 PP

  == domain 2    score: 38.1 bits;  conditional E-value: 1.6e-12
   TIGR04018 108 ekeeyeakkvvvatGyydipnllnvpGedlpkvshyykeahpyvkqkvvvvGgknsavdaalelyrkgaevtlvvrgeel.sekvkyWvkpdlenrikegkikalfesevkeieees...vtletp...egeveeiendfvlaltGyrpdle.lleklgveleedekipvydeetmEtnveglylaGvvaag 291
                  +++++a k+v+atG   +p   +v  ++   v+     + + v +k+vv+Gg     +     +r gaevt+v    ++  + + + v   + + +k++ ik++++++v+ ++++s   vt+ t+   +g++e i++d vl+ +G rp l   l+++gv+l+e++   v  +e++ tnv+++y  G +  g
  MMETSP1137-20121227|6754_1 165 GQQVVSADKIVLATGSEVTP-FPGVEIDEEAIVTSTGALSLKSVPKKMVVIGGGVIGLELGSVWERLGAEVTVVEFLGAVgGAGMDPEVSKTFLQILKKQGIKFKLSTKVTGVTKKSgggVTVGTEaskDGSKEDIDADVVLMCIGRRPVLPpGLSDVGVKLTERN--QVIVDEHFKTNVPSIYAIGDIIHG 353
                 57788999999999975444.457777777889999999999999*****************************98777625789****************************998555566655433488999***************98527*********995..4555678************99887 PP

>> TIGR01316  gltA: glutamate synthase (NADPH), homotetrameric
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.9   0.1   0.00029      0.03     131     171 ..      35      75 ..      24     110 .. 0.82
   2 !   33.8   0.5   3.4e-11   3.5e-09     271     428 ..     207     354 ..     202     365 .. 0.77

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 0.00029
   TIGR01316 131 stkkkvaviGaGpaGlavaselakkGhevtvfealhkpGGv 171
                 + k+ v v+G Gp G a a + a++G +v   e     GG 
  MMETSP1137-20121227|6754_1  35 PDKFDVVVVGGGPGGYAGAIKGAQMGLKVACIEKRGALGGT 75 
                 67899*************************99987777664 PP

  == domain 2    score: 33.8 bits;  conditional E-value: 3.4e-11
   TIGR01316 271 vgkkvvviGgGntavdaartalrlGaevhvvyrrtredmtareeeikh.....aeeeGvkfefllqpveviGdeeGevkavkfektelqeerdsgekrkvpvtdeevkleadavivaiGqean.kiiaedsslktskrGtivvdedletsieGvfaGGdvirGe 428
                 v kk+vviGgG + ++      rlGaev+vv   +    +  + e+++     ++++G+kf+  ++ + v  +  G v +v  e       +           +++  ++ad v++ iG+++  +    d ++k ++r  ++vde+++t+++ ++a Gd+i+G 
  MMETSP1137-20121227|6754_1 207 VPKKMVVIGGGVIGLELGSVWERLGAEVTVVEFLGAVGGAGMDPEVSKtflqiLKKQGIKFKLSTKVTGVTKKSGGGV-TVGTE------AS---------KDGSKEDIDADVVLMCIGRRPVlPPGLSDVGVKLTERNQVIVDEHFKTNVPSIYAIGDIIHGP 354
                 679**************************9987776665555555443111127889999998776666655544443.33332......11.........234556799**********98636677889*******************************96 PP

>> TIGR01318  gltD_gamma_fam: glutamate synthase, small subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.3   0.0    0.0016      0.17     141     188 ..      37      86 ..      27     128 .. 0.79
   2 ?   -1.1   0.0       1.1   1.1e+02     376     402 ..     160     186 ..     138     201 .. 0.79
   3 !   10.8   0.2   0.00028     0.029     138     214 ..     205     273 ..     201     279 .. 0.88
   4 !   26.3   0.0   5.4e-09   5.6e-07     379     454 ..     293     364 ..     283     371 .. 0.93

  Alignments for each domain:
  == domain 1    score: 8.3 bits;  conditional E-value: 0.0016
   TIGR01318 141 gkrvaviGaGpaGlacadvlaraGvkvvvfdrypeiGGl.ltfG.ipsfk 188
                 +  v v+G+Gp G a a   a+ G kv   ++  ++GG  l+ G ips  
  MMETSP1137-20121227|6754_1  37 KFDVVVVGGGPGGYAGAIKGAQMGLKVACIEKRGALGGTcLNVGcIPSKS 86 
                 55799*******************************99537776467654 PP

  == domain 2    score: -1.1 bits;  conditional E-value: 1.1
   TIGR01318 376 eivaGseavleadvviiafGfephame 402
                   ++G ++v+ ad +++a G e +  +
  MMETSP1137-20121227|6754_1 160 DLLDGGQQVVSADKIVLATGSEVTPFP 186
                 56789999*********9998776655 PP

  == domain 3    score: 10.8 bits;  conditional E-value: 0.00028
   TIGR01318 138 kktgkrvaviGaGpaGlacadvlaraGvkvvvfdrypeiGGlltfGipsfkldkavlarrreileamGiefklnvev 214
                 k + k++ viG+G  Gl    v  r G +v+v +   ++GG    G     +d +v  +  +il++ Gi+fkl ++v
  MMETSP1137-20121227|6754_1 205 KSVPKKMVVIGGGVIGLELGSVWERLGAEVTVVEFLGAVGGA---G-----MDPEVSKTFLQILKKQGIKFKLSTKV 273
                 567799*********************************995...3.....57777778889999999999999987 PP

  == domain 4    score: 26.3 bits;  conditional E-value: 5.4e-09
   TIGR01318 379 aGseavleadvviiafGfephamewlaehgikldskGrivaaeeselayqtsnpkifaGGdivrGadlvvtavaeG 454
                 +Gs++ ++advv++  G +p  ++ l++ g+kl ++ +++++     +++t+ p i+a Gdi++G  l   a +eG
  MMETSP1137-20121227|6754_1 293 DGSKEDIDADVVLMCIGRRPVLPPGLSDVGVKLTERNQVIVD----EHFKTNVPSIYAIGDIIHGPMLAHKAEDEG 364
                 69999***********************************99....78******************9999998888 PP

>> TIGR03169  Nterm_to_SelD: pyridine nucleotide-disulfide oxidoreductase family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.1     0.067       7.1     123     157 ..      14      49 ..       4      69 .. 0.77
   2 ?    3.0   0.0     0.096        10     175     244 ..     109     183 ..      93     206 .. 0.71
   3 !   37.9   0.1   2.3e-12   2.5e-10     142     282 ..     205     352 ..     192     367 .. 0.83

  Alignments for each domain:
  == domain 1    score: 3.5 bits;  conditional E-value: 0.067
   TIGR03169 123 KPleellaaweellekakaseetk.slavvGgGaag 157
                  P ++++  + + ++  +++   k +++vvGgG +g
  MMETSP1137-20121227|6754_1  14 GPAATFAPSFLHARRTFASDAPDKfDVVVVGGGPGG 49 
                 5777777777777777666666666*********99 PP

  == domain 2    score: 3.0 bits;  conditional E-value: 0.096
   TIGR03169 175 aevsla..seakllqalsakvrklvkrllakrgievlekeevtevede...alllaegetleadavllatgakap 244
                 ++++l   +  +  +++ +++   ++ l++k+g++ ++ +    ++++    ll + ++ ++ad+++latg++  
  MMETSP1137-20121227|6754_1 109 SDIKLNldKMMSEKEKSVKGLTGGIEMLFKKNGVTYIKGAGKITGTNQvsvDLLDGGQQVVSADKIVLATGSEVT 183
                 4555553233333444556666778999999999999888777776555445555778899**********9865 PP

  == domain 3    score: 37.9 bits;  conditional E-value: 2.3e-12
   TIGR03169 142 seetkslavvGgGaagvElalalrkrlkkrglkaevsla..seakllqalsakvrklvkrllakrgievlekeevtevede..........alllaegetleadavllatgaka..pawLaesglsldedGflavkktLqslshpevFaaGDcav 282
                 ++ +k+++v+GgG+ g+El  +++   ++ g++  v+++   +a   +++ ++v k++ ++l+k+gi+   +++vt v+++          a + +++e ++ad+vl+++g ++  p+ L++ g++l+e+  + v++++++ + p+++a GD+++
  MMETSP1137-20121227|6754_1 205 KSVPKKMVVIGGGVIGLELG-SVW---ERLGAE--VTVVefLGAVGGAGMDPEVSKTFLQILKKQGIKFKLSTKVTGVTKKsgggvtvgteASKDGSKEDIDADVVLMCIGRRPvlPPGLSDVGVKLTERNQVIVDEHFKT-NVPSIYAIGDIIH 352
                 566789************84.444...444444..33333356666788999**************************9889999988876666688999************9966799*********************9.9**********97 PP

>> TIGR03140  AhpF: alkyl hydroperoxide reductase, F subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.0   7.4   1.2e-11   1.3e-09     208     488 ..      33     352 ..      24     356 .. 0.70

  Alignments for each domain:
  == domain 1    score: 35.0 bits;  conditional E-value: 1.2e-11
   TIGR03140 208 eekekydvlvvGgGPagaaaaiyaarkGlkvalvaer..iGGqvkdtvgi......en..lisvkett....G...sklaanleehikeynid..........vleeqkvkkie.....teeeakevelesG..evlkaksvivatGakWrel.gvpGekeylgkGvayCphCdGPlfkgkkvaviGGGnsGieaaidlaGivehvtvlefadelka...d.kvlveklk..slsnvdiltsaktkeivgdgdkvtglkykdrsseeekkleldGvfvqiGlvpnt.eflkda.velnrrGeividergrtsvkGifaaGdvtt 488
                 ++ +k+dv+vvGgGP g a ai  a+ Glkva + +r  +GG   +   i       n  l  + +t+    G   s +  nl++ ++e + +          +++++ v+ i+     t  ++ +v+l +G  +v++a+ +++atG++   + gv+ ++e +       +         kk+ viGGG  G+e       +  +vtv+ef+ ++     d +v    l+  +++ ++  +s+k + ++ ++    ++  +  + + +++++ d v++ iG  p     l+d+ v+l++r ++++de+ +t+v+ i+a Gd+ +
  MMETSP1137-20121227|6754_1  33 DAPDKFDVVVVGGGPGGYAGAIKGAQMGLKVACIEKRgaLGGTCLNVGCIpsksllHNshLYHMAKTEfsmrGievSDIKLNLDKMMSEKEKSvkgltggiemLFKKNGVTYIKgagkiTGTNQVSVDLLDGgqQVVSADKIVLATGSEVTPFpGVEIDEEAIVTSTGALSLKS----VPKKMVVIGGGVIGLELGSVWERLGAEVTVVEFLGAVGGagmDpEVSKTFLQilKKQGIKFKLSTKVTGVTKKSGGGVTVGTEASKDGSKEDIDADVVLMCIGRRPVLpPGLSDVgVKLTERNQVIVDEHFKTNVPSIYAIGDIIH 352
                 56689******************************98889**99988776332222222244444443222231115666799999887654300111211123455667777777755555666777766634468999********98765456655555544333333333....359***************99**************998641223345555555114456666777777777776666666777888889999************9886424577777***************************865 PP

>> TIGR01317  GOGAT_sm_gam: glutamate synthase, NADH/NADPH, small subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.8   0.0   0.00064     0.067     145     181 ..      39      75 ..      30     124 .. 0.86
   2 ?    5.5   0.3     0.013       1.4     141     216 ..     206     273 ..     193     280 .. 0.80
   3 !   21.4   0.0     2e-07   2.1e-05     395     467 ..     293     364 ..     272     370 .. 0.84

  Alignments for each domain:
  == domain 1    score: 9.8 bits;  conditional E-value: 0.00064
   TIGR01317 145 kvavvGsGPaGlaaadqlnraGhtvtvferedrvGGl 181
                  v vvG GP G a a + ++ G +v+  e+    GG 
  MMETSP1137-20121227|6754_1  39 DVVVVGGGPGGYAGAIKGAQMGLKVACIEKRGALGGT 75 
                 799*****************************99995 PP

  == domain 2    score: 5.5 bits;  conditional E-value: 0.013
   TIGR01317 141 rtGkkvavvGsGPaGlaaadqlnraGhtvtvferedrvGGllryGiPnlkldkeiverridlleaeGvdfvtnvei 216
                    kk+ v+G G  Gl      +r G +vtv e    vGG          +d e+ +  +++l+++G++f+ ++++
  MMETSP1137-20121227|6754_1 206 SVPKKMVVIGGGVIGLELGSVWERLGAEVTVVEFLGAVGGA--------GMDPEVSKTFLQILKKQGIKFKLSTKV 273
                 5568999**************************99999985........345555566677777777777777766 PP

  == domain 3    score: 21.4 bits;  conditional E-value: 2e-07
   TIGR01317 395 pgseevleadlvllalGfvgpeqallddlgvdkdergnikaeldesetsidGvfaaGdarrGqslivwaineG 467
                 +gs+e ++ad+vl+++G        l+d+gv+ +er+++   +++ +t+++ ++a Gd+  G  l   a +eG
  MMETSP1137-20121227|6754_1 293 DGSKEDIDADVVLMCIGRRPVLPPGLSDVGVKLTERNQVIV-DEHFKTNVPSIYAIGDIIHGPMLAHKAEDEG 364
                 689999************999999***************55.55666*************9998887777776 PP

>> TIGR03315  Se_ygfK: putative selenate reductase, YgfK subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   0.0   2.1e-05    0.0022     534     579 ..      34      79 ..       7     130 .. 0.84
   2 !    8.5   0.2    0.0006     0.063     530     575 ..     201     246 ..     188     275 .. 0.75
   3 !   14.0   0.0   1.2e-05    0.0013     759     820 ..     295     356 ..     279     366 .. 0.87

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 2.1e-05
   TIGR03315 534 ksekhkvaviGaGPaGlsagyflaraGlpvtvfekkekagGvvkni 579
                   +k  v v+G+GP G + +   a+ Gl+v+ +ek+   gG++ n+
  MMETSP1137-20121227|6754_1  34 APDKFDVVVVGGGPGGYAGAIKGAQMGLKVACIEKRGALGGTCLNV 79 
                 457889*************************************997 PP

  == domain 2    score: 8.5 bits;  conditional E-value: 0.0006
   TIGR03315 530 kpqlksekhkvaviGaGPaGlsagyflaraGlpvtvfekkekagGv 575
                 + +lks  +k+ viG+G  Gl  g +  r G +vtv+e    +gG 
  MMETSP1137-20121227|6754_1 201 ALSLKSVPKKMVVIGGGVIGLELGSVWERLGAEVTVVEFLGAVGGA 246
                 55667777899***************************99998886 PP

  == domain 3    score: 14.0 bits;  conditional E-value: 1.2e-05
   TIGR03315 759 elveleadaviaavGeq.vdtellkklgieldekgkvvvneetketsvtnvfviGdakkGPat 820
                    +++ad v++ +G++ v    l+ +g++l e+++v v+e+   t+v+ ++ iGd+ +GP  
  MMETSP1137-20121227|6754_1 295 SKEDIDADVVLMCIGRRpVLPPGLSDVGVKLTERNQVIVDEH-FKTNVPSIYAIGDIIHGPML 356
                 55689**********97356678*****************99.99****************75 PP

>> TIGR03997  mycofact_OYE_2: mycofactocin system FadH/OYE family oxidoreductase 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.0   0.2   2.3e-08   2.4e-06     380     449 ..      38     109 ..      26     135 .. 0.83
   2 ?   -1.1   0.0      0.92        97     464     492 ..     171     199 ..     161     203 .. 0.81
   3 !   16.2   1.7   5.5e-06   0.00058     368     494 ..     197     331 ..     179     350 .. 0.74

  Alignments for each domain:
  == domain 1    score: 24.0 bits;  conditional E-value: 2.3e-08
   TIGR03997 380 kkvlvvGgGPaGleaaataarrGhrvtllereeelGGqvklaaklpgreela..elvrdlaselkelgvevk 449
                   v+vvGgGP+G + a++ a+ G +v  +e+  +lGG    +  +p ++ l+  +l +  ++e +  g+ev+
  MMETSP1137-20121227|6754_1  38 FDVVVVGGGPGGYAGAIKGAQMGLKVACIEKRGALGGTCLNVGCIPSKSLLHnsHLYHMAKTEFSMRGIEVS 109
                 579*************************************99999999877522466777777777787775 PP

  == domain 2    score: -1.1 bits;  conditional E-value: 0.92
   TIGR03997 464 PDavvlatGsrparpdlagadservvtvr 492
                  D +vlatGs+ ++ +    d+e++vt +
  MMETSP1137-20121227|6754_1 171 ADKIVLATGSEVTPFPGVEIDEEAIVTST 199
                 699*******9998877777888888765 PP

  == domain 3    score: 16.2 bits;  conditional E-value: 5.5e-06
   TIGR03997 368 keavtlkkarrrkkvlvvGgGPaGleaaataarrGhrvtllereeelGGq......vklaaklpgreelaelvrdl.aselkelgvevklGveadaelvlae.kPDavvlatGsrparpdlagadservvtvrev 494
                 + + +l+  +++kk++v+GgG  Gle      r G +vt++e   ++GG+       k+  ++  +++++  ++++ +   k++g  v++G+ea+++  +++   D+v++  G rp+ p+  +  + ++ + ++v
  MMETSP1137-20121227|6754_1 197 TSTGALSLKSVPKKMVVIGGGVIGLELGSVWERLGAEVTVVEFLGAVGGAgmdpevSKTFLQILKKQGIKFKLSTKvTGVTKKSGGGVTVGTEASKDGSKEDiDADVVLMCIGRRPVLPPGLSDVGVKLTERNQV 331
                 456678888999************************************9743333224566777777776544444044557789999*****998876554279**********99876555445555555555 PP

>> TIGR00292  TIGR00292: thiazole biosynthesis enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.2   0.1   7.2e-08   7.6e-06      22      66 ..      38      82 ..      31     127 .. 0.87
   2 ?    3.0   0.4      0.11        11       8      59 ..     195     246 ..     190     267 .. 0.84

  Alignments for each domain:
  == domain 1    score: 23.2 bits;  conditional E-value: 7.2e-08
   TIGR00292 22 sDviivGaGpsGLtaayylakeglkvvvlerklaiGGGswgGGml 66
                 Dv++vG+Gp G + a   a+ glkv+ +e++ a+GG     G +
  MMETSP1137-20121227|6754_1 38 FDVVVVGGGPGGYAGAIKGAQMGLKVACIEKRGALGGTCLNVGCI 82
                6************************************88776665 PP

  == domain 2    score: 3.0 bits;  conditional E-value: 0.11
   TIGR00292   8 iveayfedlldyaesDviivGaGpsGLtaayylakeglkvvvlerklaiGGG 59 
                 iv ++    l+ +   ++++G+G  GL  + +  + g  v v+e   a+GG 
  MMETSP1137-20121227|6754_1 195 IVTSTGALSLKSVPKKMVVIGGGVIGLELGSVWERLGAEVTVVEFLGAVGGA 246
                 5555555556777788999*************************99888884 PP

>> TIGR00031  UDP-GALP_mutase: UDP-galactopyranose mutase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.1   1.4e-05    0.0014       1      61 [.      37      96 ..      37     103 .. 0.85
   2 !    7.4   0.1    0.0037      0.39       3      50 ..     210     258 ..     209     268 .. 0.86

  Alignments for each domain:
  == domain 1    score: 15.4 bits;  conditional E-value: 1.4e-05
   TIGR00031  1 kfdyiivGaGlsGivlaeilaklnkrvlvvekrnhiGGncydevdek.gllvhkyGphifht 61
                kfd+++vG G  G   a   a+++ +v  +ekr  +GG c +  +   + l+h+  +h++h 
  MMETSP1137-20121227|6754_1 37 KFDVVVVGGGPGGYAGAIKGAQMGLKVACIEKRGALGGTCLNVGCIPsKSLLHN--SHLYHM 96
                69**************************************99877654666675..566665 PP

  == domain 2    score: 7.4 bits;  conditional E-value: 0.0037
   TIGR00031   3 dyiivGaGlsGivlaeilaklnkrvlvvekrnhiGGncydevdek.gll 50 
                 +++++G G+ G  l  + ++l+ +v vve    +GG   d   +k  l+
  MMETSP1137-20121227|6754_1 210 KMVVIGGGVIGLELGSVWERLGAEVTVVEFLGAVGGAGMDPEVSKtFLQ 258
                 579*********************************9998665553444 PP

>> TIGR02032  GG-red-SF: geranylgeranyl reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1   0.1   4.2e-07   4.5e-05       1      34 [.      38      71 ..      38     103 .. 0.91
   2 ?   -1.9   0.0       4.2   4.5e+02     122     148 ..     155     181 ..     132     184 .. 0.72
   3 ?   -0.9   0.3       2.1   2.2e+02       3      30 ..     211     238 ..     210     240 .. 0.94
   4 ?    4.6   0.0     0.046       4.8      99     150 ..     258     313 ..     251     345 .. 0.78

  Alignments for each domain:
  == domain 1    score: 21.1 bits;  conditional E-value: 4.2e-07
   TIGR02032  1 yDvvvvGaGpaGssaAlrlakkGlrVlllekkel 34
                +DvvvvG+Gp G + A + a+ Gl+V+ +ek+ +
  MMETSP1137-20121227|6754_1 38 FDVVVVGGGPGGYAGAIKGAQMGLKVACIEKRGA 71
                7*****************************9865 PP

  == domain 2    score: -1.9 bits;  conditional E-value: 4.2
   TIGR02032 122 ekvkvevredekkevtakivigAdGak 148
                 ++v v + ++ ++ v+a+ ++ A+G++
  MMETSP1137-20121227|6754_1 155 NQVSVDLLDGGQQVVSADKIVLATGSE 181
                 678888888878889********9985 PP

  == domain 3    score: -0.9 bits;  conditional E-value: 2.1
   TIGR02032   3 vvvvGaGpaGssaAlrlakkGlrVllle 30 
                 +vv+G+G  G  ++    + G++V ++e
  MMETSP1137-20121227|6754_1 211 MVVIGGGVIGLELGSVWERLGAEVTVVE 238
                 59**********************9998 PP

  == domain 4    score: 4.6 bits;  conditional E-value: 0.046
   TIGR02032  99 ekAqeagaelllettvlsveied...ekvkvevred.ekkevtakivigAdGaksk 150
                 +  +++g+++ l t+v+ v+ +    ++v +e+++d +k++++a++v    G +  
  MMETSP1137-20121227|6754_1 258 QILKKQGIKFKLSTKVTGVTKKSgggVTVGTEASKDgSKEDIDADVVLMCIGRRPV 313
                 55689999*********999998877777777777789999999999988777655 PP

>> TIGR03143  AhpF_homolog: putative alkyl hydroperoxide reductase F subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.1   0.0    0.0009     0.095       5      40 ..      38      74 ..      35     109 .. 0.89
   2 !    9.6   0.5   0.00063     0.066     250     282 ..     318     350 ..     208     354 .. 0.67

  Alignments for each domain:
  == domain 1    score: 9.1 bits;  conditional E-value: 0.0009
   TIGR03143  5 ydlvviGgGpaglsaGiyagraklkvliiekd.elGG 40
                +d+vv+GgGp g +  i +++  lkv  iek   lGG
  MMETSP1137-20121227|6754_1 38 FDVVVVGGGPGGYAGAIKGAQMGLKVACIEKRgALGG 74
                8****************************98515666 PP

  == domain 2    score: 9.6 bits;  conditional E-value: 0.00063
   TIGR03143 250 lfkgkvelderGyvvtnedletnveGvyaaGdl 282
                 l    v+l er  v+ +e+++tnv+ +ya+Gd+
  MMETSP1137-20121227|6754_1 318 LSDVGVKLTERNQVIVDEHFKTNVPSIYAIGDI 350
                 55556999************************8 PP

>> TIGR00275  TIGR00275: flavoprotein, HI0933 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.6   2.9   0.00019      0.02       1      34 [.      40      73 ..      40      80 .. 0.93
   2 !    5.9   0.1    0.0099         1     138     180 ..     156     201 ..     123     210 .. 0.76
   3 ?   -0.8   1.4       1.1   1.1e+02       2      30 ..     212     240 ..     211     245 .. 0.88
   4 !   10.7   0.0   0.00035     0.037     107     162 ..     251     313 ..     249     343 .. 0.78

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 0.00019
   TIGR00275  1 viiiGgGaaGlmaAitaaeegakVlllEknkkig 34
                v+++GgG+ G  +Ai+ a+ g+kV+ +Ek+  +g
  MMETSP1137-20121227|6754_1 40 VVVVGGGPGGYAGAIKGAQMGLKVACIEKRGALG 73
                79***************************98877 PP

  == domain 2    score: 5.9 bits;  conditional E-value: 0.0099
   TIGR00275 138 kfevet...ekkeleakkvilatGgksypklGstgsgyelaeklGh 180
                 +++v++   +++ ++a+k++latG++  p  G + +  +++ + G 
  MMETSP1137-20121227|6754_1 156 QVSVDLldgGQQVVSADKIVLATGSEVTPFPGVEIDEEAIVTSTGA 201
                 44444444578999************99998888887777777775 PP

  == domain 3    score: -0.8 bits;  conditional E-value: 1.1
   TIGR00275   2 iiiGgGaaGlmaAitaaeegakVlllEkn 30 
                 ++iGgG  Gl      ++ ga+V+++E  
  MMETSP1137-20121227|6754_1 212 VVIGGGVIGLELGSVWERLGAEVTVVEFL 240
                 8*********99999999*******9965 PP

  == domain 4    score: 10.7 bits;  conditional E-value: 0.00035
   TIGR00275 107 svldaLlkelkelgvevlteskvksi.kkeeekfevet......ekkeleakkvilatGgksy 162
                 +v +++l+ lk++g+++++++kv+ + kk+ ++++v t      +k+++ a+ v+++ G   +
  MMETSP1137-20121227|6754_1 251 EVSKTFLQILKKQGIKFKLSTKVTGVtKKSGGGVTVGTeaskdgSKEDIDADVVLMCIGRRPV 313
                 588999********************9999999999886665555788999999999997655 PP

>> TIGR03467  HpnE: squalene-associated FAD-dependent desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.8   3.6e-06   0.00038       1      40 [.      40      79 ..      40     102 .. 0.89
   2 ?    2.5   4.0      0.15        16       1      35 [.     211     245 ..     211     255 .. 0.95
   3 ?    0.8   0.0      0.48        51     213     260 ..     255     307 ..     246     338 .. 0.72

  Alignments for each domain:
  == domain 1    score: 17.7 bits;  conditional E-value: 3.6e-06
   TIGR03467  1 vvvvGgGlAGLaAAveLaraGvrvtllEarrqlGGRarsf 40
                vvvvGgG  G a A++ a+ G++v  +E r +lGG +  +
  MMETSP1137-20121227|6754_1 40 VVVVGGGPGGYAGAIKGAQMGLKVACIEKRGALGGTCLNV 79
                89*********************************99665 PP

  == domain 2    score: 2.5 bits;  conditional E-value: 0.15
   TIGR03467   1 vvvvGgGlAGLaAAveLaraGvrvtllEarrqlGG 35 
                 +vv+GgG+ GL  +    r G++vt++E   ++GG
  MMETSP1137-20121227|6754_1 211 MVVIGGGVIGLELGSVWERLGAEVTVVEFLGAVGG 245
                 69*****************************9999 PP

  == domain 3    score: 0.8 bits;  conditional E-value: 0.48
   TIGR03467 213 paarylesrggevrlgtrvreleasag.giralve.aaeet...laadavvlA 260
                  +++ l+++g +++l+t+v+ ++ + g g+++ +e +++++    +ad v + 
  MMETSP1137-20121227|6754_1 255 TFLQILKKQGIKFKLSTKVTGVTKKSGgGVTVGTEaSKDGSkedIDADVVLMC 307
                 57889****************98765515666555433333444555655555 PP

>> TIGR01372  soxA: sarcosine oxidase, alpha subunit family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   1.2   4.7e-06   0.00049     169     208 ..      38      77 ..      30      82 .. 0.93
   2 ?    1.3   1.0      0.11        12     325     424 ..     211     314 ..     167     331 .. 0.52

  Alignments for each domain:
  == domain 1    score: 15.8 bits;  conditional E-value: 4.7e-06
   TIGR01372 169 cDvLvvGaGpaGLaaAraAaraGarvilvdeqaeaGGsll 208
                  Dv+vvG+Gp G a A + a+ G++v  ++++ + GG+ l
  MMETSP1137-20121227|6754_1  38 FDVVVVGGGPGGYAGAIKGAQMGLKVACIEKRGALGGTCL 77 
                 59***********************************865 PP

  == domain 2    score: 1.3 bits;  conditional E-value: 0.11
   TIGR01372 325 ivvatnndsayevaadlkeaGlavvaivDaRekvspelaaeare........agvevikgsavaategkkrvesvkvarvdlstaesgaeeeleaDallvsgGwsPvv 424
                 +vv+     + e+   +++ G++v+++    + +   ++ e+ +        +g++   ++ v+ + +kk+  +v+v    +++ + g++e ++aD++l+  G  Pv+
  MMETSP1137-20121227|6754_1 211 MVVIGGGVIGLELGSVWERLGAEVTVVEFLGAVGGAGMDPEVSKtflqilkkQGIKFKLSTKVTGV-TKKSGGGVTVG---TEASKDGSKEDIDADVVLMCIGRRPVL 314
                 555555555555555555555444333333333333333333330000000033444444343333.23444455554...333456778888888888888888875 PP

>> TIGR03364  HpnW_proposed: FAD dependent oxidoreductase TIGR03364
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.1   2.1e-05    0.0022       2      46 ..      39      82 ..      38     101 .. 0.85
   2 ?    5.6   2.3     0.014       1.5       2      34 ..     210     242 ..     209     248 .. 0.86
   3 ?   -1.1   0.0       1.5   1.6e+02     156     194 ..     261     309 ..     252     311 .. 0.62

  Alignments for each domain:
  == domain 1    score: 14.9 bits;  conditional E-value: 2.1e-05
   TIGR03364  2 dvvvvGaGivGlahAlaaarrGlkVtvierssraaGAsvrNFGqv 46
                dvvvvG+G  G a A++ a+ GlkV+ ie+   a G +  N G +
  MMETSP1137-20121227|6754_1 39 DVVVVGGGPGGYAGAIKGAQMGLKVACIEKR-GALGGTCLNVGCI 82
                9****************************86.6788888898876 PP

  == domain 2    score: 5.6 bits;  conditional E-value: 0.014
   TIGR03364   2 dvvvvGaGivGlahAlaaarrGlkVtvierssr 34 
                 ++vv+G+G++Gl       r G +Vtv+e   +
  MMETSP1137-20121227|6754_1 210 KMVVIGGGVIGLELGSVWERLGAEVTVVEFLGA 242
                 589*************************96555 PP

  == domain 3    score: -1.1 bits;  conditional E-value: 1.5
   TIGR03364 156 aeekgveflwntavtevets...........tvrtsrGevhaeqvlVcsg 194
                 + ++g++f+++t+vt v ++               s+ ++ a+ vl+c g
  MMETSP1137-20121227|6754_1 261 K-KQGIKFKLSTKVTGVTKKsgggvtvgteaSKDGSKEDIDADVVLMCIG 309
                 3.448899999999999666677774433221122334455788888877 PP

>> TIGR03996  mycofact_OYE_1: mycofactocin system FadH/OYE family oxidoreductase 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.8   0.5   0.00025     0.026     373     415 ..      38      80 ..      26     141 .. 0.78
   2 !    8.4   1.5    0.0013      0.14     455     597 ..     167     310 ..     147     315 .. 0.58

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 0.00025
   TIGR03996 373 gdvlvvGGGpaGleaarvlavrGhrvtlaeasarlGGmvriaa 415
                  dv+vvGGGp G   a   a  G +v  +e+   lGG+   + 
  MMETSP1137-20121227|6754_1  38 FDVVVVGGGPGGYAGAIKGAQMGLKVACIEKRGALGGTCLNVG 80 
                 689***********9999999****************976554 PP

  == domain 2    score: 8.4 bits;  conditional E-value: 0.0013
   TIGR03996 455 araaGevvvlatGsvarplpap.vdatvrvldaaevleaddalaeGpvvvidplGGpvgvavaealaarGrdvsivtpdsvvGsrlgasGdladantr.lqragvtrqlasrvveiar...dglvl..edaytgersvlecavvidcspr 597
                 +  + + +vlatGs   p p   +d+   ++  + +l   +++++  vv+    GG +g+ +  +   +G +v++v     vG   g+  ++ ++  + l++ g++ +l+++v+ +++   +g+++  e    g ++ ++ +vv+ c  r
  MMETSP1137-20121227|6754_1 167 QVVSADKIVLATGSEVTPFPGVeIDEEA-IVTSTGALSL-KSVPKKMVVI---GGGVIGLELGSVWERLGAEVTVVEFLGAVGG-AGMDPEVSKTFLQiLKKQGIKFKLSTKVTGVTKksgGGVTVgtEASKDGSKEDIDADVVLMCIGR 310
                 4455667788888887775543233332.2223333332.3344444333...4778888888888888888888876666554.35556666666552467788888888887775422145555224455666777777777777655 PP

>> TIGR01816  sdhA_forward: succinate dehydrogenase, flavoprotein subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.7   9.2e-06   0.00097       2      33 ..      37      68 ..      36      72 .. 0.96
   2 ?   -1.3   0.0      0.91        95     166     198 ..     146     180 ..     130     186 .. 0.80

  Alignments for each domain:
  == domain 1    score: 15.2 bits;  conditional E-value: 9.2e-06
   TIGR01816  2 kfdvvvvGaGGaGlraalelakeglktavvtk 33
                kfdvvvvG+G  G   a++ a+ glk+a++ k
  MMETSP1137-20121227|6754_1 37 KFDVVVVGGGPGGYAGAIKGAQMGLKVACIEK 68
                8*****************************88 PP

  == domain 2    score: -1.3 bits;  conditional E-value: 0.91
   TIGR01816 166 ledgevrGv..ialeletGeihvfrakavvlatGG 198
                 +  g+++G   ++++l +G  +v+ a  +vlatG 
  MMETSP1137-20121227|6754_1 146 KGAGKITGTnqVSVDLLDGGQQVVSADKIVLATGS 180
                 556666665337889999***************96 PP

>> TIGR02733  desat_CrtD: C-3',4' desaturase CrtD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.3   1.7    0.0016      0.17       3      39 ..      39      75 ..      37      79 .. 0.92
   2 !    8.4   2.0    0.0015      0.16       2      39 ..     209     246 ..     208     250 .. 0.93
   3 ?    3.8   0.0     0.039       4.1     234     290 ..     252     308 ..     247     331 .. 0.88

  Alignments for each domain:
  == domain 1    score: 8.3 bits;  conditional E-value: 0.0016
   TIGR02733  3 svvviGaGiaGltaaallakrGlevtlleaaaqvGGC 39
                +vvv+G+G +G ++a   a+ Gl+v  +e+   +GG 
  MMETSP1137-20121227|6754_1 39 DVVVVGGGPGGYAGAIKGAQMGLKVACIEKRGALGGT 75
                79*************99**************999984 PP

  == domain 2    score: 8.4 bits;  conditional E-value: 0.0015
   TIGR02733   2 ksvvviGaGiaGltaaallakrGlevtlleaaaqvGGC 39 
                 k++vviG+G+ Gl  +++  + G evt++e    vGG 
  MMETSP1137-20121227|6754_1 209 KKMVVIGGGVIGLELGSVWERLGAEVTVVEFLGAVGGA 246
                 679***************************99999995 PP

  == domain 3    score: 3.8 bits;  conditional E-value: 0.039
   TIGR02733 234 lsdrlvealkkdggelllgqrveaietkeekaeakvvvdsrkkekeevkaddvvanl 290
                 +s ++++ lkk+g +  l+ +v+ +++k++  +++ ++ s+  +ke++ ad v++ +
  MMETSP1137-20121227|6754_1 252 VSKTFLQILKKQGIKFKLSTKVTGVTKKSGGGVTVGTEASKDGSKEDIDADVVLMCI 308
                 57778999***************************9**************9988766 PP

>> TIGR02023  BchP-ChlP: geranylgeranyl reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   0.3   6.3e-05    0.0066       2      32 ..      39      69 ..      38      87 .. 0.89

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 6.3e-05
   TIGR02023  2 dvlviGggpsGaaaaetLakagievillere 32
                dv+v+Gggp+G a a++ a++g +v+ +e++
  MMETSP1137-20121227|6754_1 39 DVVVVGGGPGGYAGAIKGAQMGLKVACIEKR 69
                9****************************97 PP

>> TIGR01790  carotene-cycl: lycopene cyclase family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.9   3.5e-05    0.0037       1      35 [.      39      73 ..      39      77 .. 0.90
   2 ?   -2.1   0.8       3.3   3.5e+02       2      29 ..     211     238 ..     210     245 .. 0.88

  Alignments for each domain:
  == domain 1    score: 14.3 bits;  conditional E-value: 3.5e-05
   TIGR01790  1 DliviGgGlAglaiAlelakpglrvqlieaapklp 35
                D++v+GgG+ g a A + a+ gl+v  ie    l+
  MMETSP1137-20121227|6754_1 39 DVVVVGGGPGGYAGAIKGAQMGLKVACIEKRGALG 73
                9***************************9766555 PP

  == domain 2    score: -2.1 bits;  conditional E-value: 3.3
   TIGR01790   2 liviGgGlAglaiAlelakpglrvqlie 29 
                 ++viGgG  gl +    ++ g +v ++e
  MMETSP1137-20121227|6754_1 211 MVVIGGGVIGLELGSVWERLGAEVTVVE 238
                 69*********99999999999998887 PP

>> TIGR02734  crtI_fam: phytoene desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   3.5   4.9e-05    0.0052       1      35 [.      40      74 ..      40      79 .. 0.95
   2 !    6.7   3.6    0.0049      0.52       2      36 ..     212     246 ..     211     253 .. 0.94
   3 ?   -0.4   0.0      0.73        76     220     268 ..     252     305 ..     246     307 .. 0.79

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 4.9e-05
   TIGR02734  1 avViGaGlgGLAlAirLaaaGievtvlekrdkpGG 35
                +vV+G+G gG A Ai+ a+ G +v  +ekr ++GG
  MMETSP1137-20121227|6754_1 40 VVVVGGGPGGYAGAIKGAQMGLKVACIEKRGALGG 74
                69********************************9 PP

  == domain 2    score: 6.7 bits;  conditional E-value: 0.0049
   TIGR02734   2 vViGaGlgGLAlAirLaaaGievtvlekrdkpGGR 36 
                 vViG+G+ GL l    ++ G evtv+e   ++GG 
  MMETSP1137-20121227|6754_1 212 VVIGGGVIGLELGSVWERLGAEVTVVEFLGAVGGA 246
                 9********************************95 PP

  == domain 3    score: -0.4 bits;  conditional E-value: 0.73
   TIGR02734 220 lvealaklaedlggelrlnaeveeieteg.....erataveledgerleadavv 268
                 + +   ++ +++g++++l+++v+ +++++       ++a +++++e ++ad+v 
  MMETSP1137-20121227|6754_1 252 VSKTFLQILKKQGIKFKLSTKVTGVTKKSgggvtVGTEASKDGSKEDIDADVVL 305
                 6778889999*************9999987776644466677778889999885 PP

>> TIGR00551  nadB: L-aspartate oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.1     0.047         5       2      47 ..      37      82 ..      36     131 .. 0.75
   2 ?   -1.3   0.0       1.4   1.5e+02     155     187 ..     144     180 ..     121     185 .. 0.69
   3 ?   -0.5   0.1      0.79        83       4      30 ..     210     237 ..     208     240 .. 0.81
   4 ?    4.3   0.0     0.027       2.8     336     355 ..     331     350 ..     329     356 .. 0.91

  Alignments for each domain:
  == domain 1    score: 3.5 bits;  conditional E-value: 0.047
   TIGR00551  2 eadvvviGsGaagLsaalalaekyr.vvvlskaevkesasvyaqgGi 47
                ++dvvv+G+G  g + a+  a+ +  v+ + k+    + + +  g i
  MMETSP1137-20121227|6754_1 37 KFDVVVVGGGPGGYAGAIKGAQMGLkVACIEKR-GALGGTCLNVGCI 82
                79*****************99998779999998.4445555555555 PP

  == domain 2    score: -1.3 bits;  conditional E-value: 1.4
   TIGR00551 155 llietgrvvGvlvves....etvevlhakavvlatGG 187
                  +   g+++G   v+     ++ +v++a+++vlatG 
  MMETSP1137-20121227|6754_1 144 YIKGAGKITGTNQVSVdlldGGQQVVSADKIVLATGS 180
                 45556666665433332344677899*********95 PP

  == domain 3    score: -0.5 bits;  conditional E-value: 0.79
   TIGR00551   4 dvvviGsGaagLsaalalaekyr.vvvl 30 
                 ++vviG+G+ gL +    ++ +  v+v+
  MMETSP1137-20121227|6754_1 210 KMVVIGGGVIGLELGSVWERLGAeVTVV 237
                 689*********9988888777667776 PP

  == domain 4    score: 4.3 bits;  conditional E-value: 0.027
   TIGR00551 336 isvdaygrtevkGLYaiGev 355
                 ++vd++ +t+v+ +YaiG+ 
  MMETSP1137-20121227|6754_1 331 VIVDEHFKTNVPSIYAIGDI 350
                 78****************85 PP

>> TIGR00136  gidA: tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   0.2     0.007      0.74       1      30 [.      38      67 ..      38      95 .. 0.88
   2 ?    2.3   0.1     0.084       8.8       2      29 ..     210     237 ..     209     255 .. 0.82

  Alignments for each domain:
  == domain 1    score: 5.9 bits;  conditional E-value: 0.007
   TIGR00136  1 fdviviGaGhaGieaalaaarlgaktlllt 30
                fdv+v+G+G  G   a+  a++g+k+  + 
  MMETSP1137-20121227|6754_1 38 FDVVVVGGGPGGYAGAIKGAQMGLKVACIE 67
                79***********************99875 PP

  == domain 2    score: 2.3 bits;  conditional E-value: 0.084
   TIGR00136   2 dviviGaGhaGieaalaaarlgaktlll 29 
                 +++viG+G  G+e   +  rlga+++++
  MMETSP1137-20121227|6754_1 210 KMVVIGGGVIGLELGSVWERLGAEVTVV 237
                 589*********************9976 PP

>> TIGR01984  UbiH: 2-polyprenyl-6-methoxyphenol 4-hydroxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   0.4     0.012       1.3       1      32 [.      39      69 ..      39      75 .. 0.95
   2 ?    3.3   0.1     0.062       6.5       2      31 ..     211     239 ..     210     278 .. 0.73

  Alignments for each domain:
  == domain 1    score: 5.6 bits;  conditional E-value: 0.012
   TIGR01984  1 dviivGgglvGlslAlaLsrksklkialieak 32
                dv++vGgg+ G + A+  ++ + lk+a ie++
  MMETSP1137-20121227|6754_1 39 DVVVVGGGPGGYAGAIKGAQMG-LKVACIEKR 69
                8*********************.*******97 PP

  == domain 2    score: 3.3 bits;  conditional E-value: 0.062
   TIGR01984   2 viivGgglvGlslAlaLsrksklkialiea 31 
                 ++++Ggg++Gl l    +r +  +++++e 
  MMETSP1137-20121227|6754_1 211 MVVIGGGVIGLELGSVWERLG-AEVTVVEF 239
                 79*******************.99999996 PP

>> TIGR01812  sdhA_frdA_Gneg: succinate dehydrogenase or fumarate reductase, flavoprotein subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   0.9    0.0018      0.19       1      30 [.      39      68 ..      39      72 .. 0.96
   2 ?    0.3   0.1      0.37        39     154     189 ..     143     180 ..     123     200 .. 0.78

  Alignments for each domain:
  == domain 1    score: 7.9 bits;  conditional E-value: 0.0018
   TIGR01812  1 DvvivGaGlAGlraAveaakkglkvavisk 30
                Dvv+vG+G  G   A++ a+ glkva+i k
  MMETSP1137-20121227|6754_1 39 DVVVVGGGPGGYAGAIKGAQMGLKVACIEK 68
                9**************************987 PP

  == domain 2    score: 0.3 bits;  conditional E-value: 0.37
   TIGR01812 154 dliledkevkGv..vaidlktgevvvlrakavvlatGG 189
                   i+  ++++G   v +dl +g  +v++a  +vlatG 
  MMETSP1137-20121227|6754_1 143 TYIKGAGKITGTnqVSVDLLDGGQQVVSADKIVLATGS 180
                 55555566666533788999****************96 PP

>> TIGR03378  glycerol3P_GlpB: glycerol-3-phosphate dehydrogenase, anaerobic, B subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   1.3   0.00021     0.023       1      31 [.      38      68 ..      38      73 .. 0.93
   2 ?   -1.3   0.0       1.7   1.8e+02     303     320 ..     163     180 ..     132     183 .. 0.73
   3 ?   -0.5   0.2         1   1.1e+02       3      29 ..     211     237 ..     210     240 .. 0.80
   4 ?   -3.7   0.0         9   9.5e+02     365     394 ..     321     353 ..     319     353 .. 0.72

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 0.00021
   TIGR03378  1 fDviiiGgGlaGlscalrlaeaGkktaiiaa 31
                fDv+++GgG  G++ a++ a+ G k+a i +
  MMETSP1137-20121227|6754_1 38 FDVVVVGGGPGGYAGAIKGAQMGLKVACIEK 68
                9**************************9975 PP

  == domain 2    score: -1.3 bits;  conditional E-value: 1.7
   TIGR03378 303 nhedipleakqfvlasGs 320
                   +++ ++a+++vla+Gs
  MMETSP1137-20121227|6754_1 163 DGGQQVVSADKIVLATGS 180
                 56678899*********9 PP

  == domain 3    score: -0.5 bits;  conditional E-value: 1
   TIGR03378   3 viiiGgGlaGlscalrlaeaGkktaii 29 
                 +++iGgG+ Gl  +    + G  + ++
  MMETSP1137-20121227|6754_1 211 MVVIGGGVIGLELGSVWERLGAEVTVV 237
                 69*********9887777777776665 PP

  == domain 4    score: -3.7 bits;  conditional E-value: 9
   TIGR03378 365 fGvktdaklrvskagktien...LyaiGavlsg 394
                 +Gvk +++ +v  + ++ +n   +yaiG ++ g
  MMETSP1137-20121227|6754_1 321 VGVKLTERNQVIVDEHFKTNvpsIYAIGDIIHG 353
                 688888888888877765553337999999875 PP

>> TIGR00518  alaDH: alanine dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.2      0.58        61     168     196 ..      38      66 ..      33      69 .. 0.87
   2 ?    0.7   0.0      0.41        43     119     194 ..     106     183 ..      90     193 .. 0.75
   3 ?    9.8   0.2   0.00068     0.072     168     197 ..     209     238 ..     200     241 .. 0.92
   4 ?   -3.6   0.1       8.2   8.6e+02     150     184 ..     261     292 ..     255     307 .. 0.69

  Alignments for each domain:
  == domain 1    score: 0.2 bits;  conditional E-value: 0.58
   TIGR00518 168 gkvtiiGgGvvGtnaaklavGlGatvtil 196
                  +v+++GgG  G+  a     +G +v+ +
  MMETSP1137-20121227|6754_1  38 FDVVVVGGGPGGYAGAIKGAQMGLKVACI 66 
                 58***********9999999999999876 PP

  == domain 2    score: 0.7 bits;  conditional E-value: 0.41
   TIGR00518 119 veeadgalpllapmsevaGrlaaqv.GaqylektkGGrGvllgG.vpGveagkvtiiGgGvvGtnaaklavGlGatvt 194
                 +e +d +l l   mse    +     G + l k++G   +  +G + G ++  v ++ gG   + a k+    G++vt
  MMETSP1137-20121227|6754_1 106 IEVSDIKLNLDKMMSEKEKSVKGLTgGIEMLFKKNGVTYIKGAGkITGTNQVSVDLLDGGQQVVSADKIVLATGSEVT 183
                 5666666666666666665554443156778888888888766648999999********9999*****999999998 PP

  == domain 3    score: 9.8 bits;  conditional E-value: 0.00068
   TIGR00518 168 gkvtiiGgGvvGtnaaklavGlGatvtild 197
                  k+++iGgGv+G +   +   lGa+vt+++
  MMETSP1137-20121227|6754_1 209 KKMVVIGGGVIGLELGSVWERLGAEVTVVE 238
                 5899************************97 PP

  == domain 4    score: -3.6 bits;  conditional E-value: 8.2
   TIGR00518 150 ktkGGrGvllgGvpGveagkvtiiGgGvvGtnaak 184
                 k++G +  l + v Gv +      Gg +vGt+a+k
  MMETSP1137-20121227|6754_1 261 KKQGIKFKLSTKVTGVTKKS---GGGVTVGTEASK 292
                 66666767777777776654...255568999887 PP

>> TIGR01988  Ubi-OHases: ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   1.2    0.0016      0.16       1      32 [.      39      69 ..      39      79 .. 0.92
   2 ?   -1.0   0.3       1.2   1.3e+02       2      16 ..     211     225 ..     210     240 .. 0.76

  Alignments for each domain:
  == domain 1    score: 8.5 bits;  conditional E-value: 0.0016
   TIGR01988  1 divIvGgGlvGlalAlaLassadlkvalveak 32
                d+v+vGgG+ G a A++ a+++ lkva +e++
  MMETSP1137-20121227|6754_1 39 DVVVVGGGPGGYAGAIKGAQMG-LKVACIEKR 69
                9****************99888.******987 PP

  == domain 2    score: -1.0 bits;  conditional E-value: 1.2
   TIGR01988   2 ivIvGgGlvGlalAl 16 
                 +v++GgG++Gl l  
  MMETSP1137-20121227|6754_1 211 MVVIGGGVIGLELGS 225
                 79********98865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (504 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       256  (0.0624086); expected 82.0 (0.02)
Passed bias filter:                      182  (0.0443686); expected 82.0 (0.02)
Passed Vit filter:                        69  (0.0168211); expected 4.1 (0.001)
Passed Fwd filter:                        41  (0.00999512); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              39  [number of targets reported over threshold]
# CPU time: 1.15u 0.19s 00:00:01.34 Elapsed: 00:00:01.02
# Mc/sec: 652.18
//
Query:       MMETSP1137-20121227|6755_1  [L=424]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.38    7.4   8.7       0.51    6.9   6.0    1.1  1  TIGR01000 bacteriocin_acc: bacteriocin secretion accessory protein


Domain annotation for each model (and alignments):
>> TIGR01000  bacteriocin_acc: bacteriocin secretion accessory protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   6.0   0.00012      0.51     201     311 ..     276     389 ..     236     396 .. 0.76

  Alignments for each domain:
  == domain 1    score: 6.9 bits;  conditional E-value: 0.00012
   TIGR01000 201 sntkvsesskylslYenyqaqlkeaeekddkeqvksqilasvqqqidqLkkeiesyevqkakltksda....lsassqseklaslkeqqlakvkkelteleqklkeleakikslk 311
                 +++++++ +     + + q++ ++++ +d +++++  ++ s++  i+qL + ++ + v+  ++ + +        +s+++ + +  +q l+++ ++ ++ +q++++ + +++s +
  MMETSP1137-20121227|6755_1 276 NEQEPHAGADNSPAFSE-QTRGSRMQSSDANAETQPRVSPSMDGGISQLDHALQRATVNSPQVGNLQSvsaeQILKSKTADMTQFWQQRLQATPQTSMQPQQQQQQQQQQQHSXE 389
                 55555555444444544.557788899999**************************9999998888885323333577777888889******9999999999998888887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (424 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       172  (0.0419308); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.32u 0.16s 00:00:00.48 Elapsed: 00:00:00.55
# Mc/sec: 1017.52
//
Query:       MMETSP1137-20121227|6756_1  [L=290]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (290 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       135  (0.0329108); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.16s 00:00:00.43 Elapsed: 00:00:00.38
# Mc/sec: 1007.29
//
Query:       MMETSP1137-20121227|6758_1  [L=493]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (493 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       206  (0.0502194); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.14s 00:00:00.49 Elapsed: 00:00:00.44
# Mc/sec: 1478.88
//
Query:       MMETSP1137-20121227|6759_1  [L=390]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.2e-09   33.5   0.3      2e-07   28.0   0.2    2.1  1  TIGR03466 HpnA: hopanoid-associated sugar epimerase
    3.6e-06   24.3   0.0    6.6e-06   23.4   0.0    1.4  1  TIGR01746 Thioester-redct: thioester reductase domain
    1.5e-05   22.1   0.0    5.2e-05   20.3   0.0    1.7  1  TIGR04180 EDH_00030: NAD dependent epimerase/dehydratase, LLPSF_EDH_00030 family
    4.8e-05   20.9   0.0    8.8e-05   20.0   0.0    1.4  1  TIGR01777 yfcH: TIGR01777 family protein
      0.002   14.8   0.0     0.0029   14.3   0.0    1.2  1  TIGR02823 oxido_YhdH: putative quinone oxidoreductase, YhdH/YhfP family
     0.0056   14.1   0.0     0.0095   13.3   0.0    1.3  1  TIGR00036 dapB: dihydrodipicolinate reductase
     0.0079   12.9   0.0      0.041   10.5   0.0    1.9  1  TIGR01179 galE: UDP-glucose 4-epimerase
  ------ inclusion threshold ------
      0.014   11.6   0.0      0.019   11.2   0.0    1.1  1  TIGR02632 RhaD_aldol-ADH: rhamnulose-1-phosphate aldolase/alcohol dehydrogenase


Domain annotation for each model (and alignments):
>> TIGR03466  HpnA: hopanoid-associated sugar epimerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.0   0.2   3.9e-10     2e-07       4      98 ..      79     202 ..      76     218 .. 0.64

  Alignments for each domain:
  == domain 1    score: 28.0 bits;  conditional E-value: 3.9e-10
   TIGR03466   4 lvtGatGFvGsavvrllleeGeevrvlvrkt................sdrrnleel....dvEiveGdlkdeaslkkalkGceal..fHvAAdyr....lwa...kdpeelykanvegtravle 98 
                  vtGatG +G + v++l+++G++vr+lvr++                s+++ l+ l    +vE+v+Gd++d+++++k l+Gc+a   +H A  +r    lw    kdp++    n e  ++++ 
  MMETSP1137-20121227|6759_1  79 AVTGATGRLGRSAVHQLVQDGYQVRCLVRRQppatvshpqgemtlsnSSAEVLAWLnwlpEVEVVVGDVTDRQAVAKLLRGCSAClaLHGARRTRkisdLWNdplKDPSHSKYVNCEAIQHLID 202
                 59**************************9762222221111111111222233334334459********************986225666655433336643224566666666666666655 PP

>> TIGR01746  Thioester-redct: thioester reductase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.4   0.0   1.3e-08   6.6e-06       2      72 ..      78     149 ..      77     152 .. 0.67

  Alignments for each domain:
  == domain 1    score: 23.4 bits;  conditional E-value: 1.3e-08
   TIGR01746   2 vlLTGAtGfLGaylleeLlrrsteakviClVRakseehaleRLrealr.....syrleeeklaaerievvaGdlse 72 
                 + +TGAtG LG+  +++L+++    +v ClVR + ++   +  +  ++     ++ l   +++   +evv+Gd++ 
  MMETSP1137-20121227|6759_1  78 IAVTGATGRLGRSAVHQLVQDG--YQVRCLVRRQPPATV-SHPQGEMTlsnssAEVLAWLNWL-PEVEVVVGDVTD 149
                 569******************8..78******9998643.22222222111112333333444.689999999875 PP

>> TIGR04180  EDH_00030: NAD dependent epimerase/dehydratase, LLPSF_EDH_00030 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   0.0     1e-07   5.2e-05       2      77 ..      79     166 ..      78     170 .. 0.73

  Alignments for each domain:
  == domain 1    score: 20.3 bits;  conditional E-value: 1e-07
   TIGR04180   2 lvtGadGfiGshlvealvekGaevralvlynsfns....wGw..ldevekev......kkeievvlGdirdaesvkkavkgvdvvfhl 77 
                  vtGa G +G   v +lv++G++vr lv+    ++     G   l ++++ev        e+evv+Gd+ d ++v k ++g+ + + l
  MMETSP1137-20121227|6759_1  79 AVTGATGRLGRSAVHQLVQDGYQVRCLVRRQPPATvshpQGEmtLSNSSAEVlawlnwLPEVEVVVGDVTDRQAVAKLLRGCSACLAL 166
                 69**************************9764333111134312455555541221114699********************987765 PP

>> TIGR01777  yfcH: TIGR01777 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   0.0   1.7e-07   8.8e-05       1      42 [.      78     119 ..      78     144 .. 0.80

  Alignments for each domain:
  == domain 1    score: 20.0 bits;  conditional E-value: 1.7e-07
   TIGR01777   1 vlitGgtGliGralveelekkghevviltrskekekeekkes 42 
                 +++tG+tG +Gr+ v++l ++g++v+ l+r+++ ++ +  + 
  MMETSP1137-20121227|6759_1  78 IAVTGATGRLGRSAVHQLVQDGYQVRCLVRRQPPATVSHPQG 119
                 789****************************99766555433 PP

>> TIGR02823  oxido_YhdH: putative quinone oxidoreductase, YhdH/YhfP family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.0   5.7e-06    0.0029     145     180 ..      74     109 ..      61     153 .. 0.89

  Alignments for each domain:
  == domain 1    score: 14.3 bits;  conditional E-value: 5.7e-06
   TIGR02823 145 eegevlVtGAtGgVgslavalLsklGyevvavtgkk 180
                 ++  + VtGAtG  g  av+ L + Gy+v   + ++
  MMETSP1137-20121227|6759_1  74 AQTIIAVTGATGRLGRSAVHQLVQDGYQVRCLVRRQ 109
                 566799***********************9887766 PP

>> TIGR00036  dapB: dihydrodipicolinate reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   0.0   1.9e-05    0.0095       4      49 ..      78     122 ..      76     163 .. 0.78

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 1.9e-05
   TIGR00036   4 vavaGaaGrmGrevikavkeaedlelvaalerkgsskqgkDiGela 49 
                 +av+Ga+Gr+Gr +++++ + ++ ++ + + r+    + +  Ge++
  MMETSP1137-20121227|6759_1  78 IAVTGATGRLGRSAVHQLVQ-DGYQVRCLVRRQPPATVSHPQGEMT 122
                 89****************99.99*****999999888888888876 PP

>> TIGR01179  galE: UDP-glucose 4-epimerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.5   0.0   7.9e-05     0.041       2      69 ..      78     160 ..      77     184 .. 0.75

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 7.9e-05
   TIGR01179   2 iLvtGgaGyiGshvvrqllekgkevvvl.........D......nlskgskealkalekitevklvegdladkekleavleee 69 
                 i vtG++G +G + v+ql + g++v  l                 ls++s+e+l +l+ + ev++v gd++d+++++++l+  
  MMETSP1137-20121227|6759_1  78 IAVTGATGRLGRSAVHQLVQDGYQVRCLvrrqppatvShpqgemTLSNSSAEVLAWLNWLPEVEVVVGDVTDRQAVAKLLRGC 160
                 66999999999999999999999975442232222221233333599***********999****************999755 PP

>> TIGR02632  RhaD_aldol-ADH: rhamnulose-1-phosphate aldolase/alcohol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   3.7e-05     0.019     413     485 ..      74     158 ..      58     168 .. 0.82

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 3.7e-05
   TIGR02632 413 arrvalvtGgasGiGrevarrlvdeGahvvladlda..eaaeavaaelvdkfGadkava..........lkldvtdeeavkaafa 485
                 a+ +++vtG+++ +Gr    +lv++G  v +    +  +++   + e++    + +++a          ++ dvtd++av++ ++
  MMETSP1137-20121227|6759_1  74 AQTIIAVTGATGRLGRSAVHQLVQDGYQVRCLVRRQppATVSHPQGEMTLSNSSAEVLAwlnwlpevevVVGDVTDRQAVAKLLR 158
                 67899**********************9988766651144555666777777777788899*****998889********98876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (390 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       174  (0.0424183); expected 82.0 (0.02)
Passed bias filter:                      138  (0.0336421); expected 82.0 (0.02)
Passed Vit filter:                        28  (0.00682594); expected 4.1 (0.001)
Passed Fwd filter:                         8  (0.00195027); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.38u 0.17s 00:00:00.55 Elapsed: 00:00:00.41
# Mc/sec: 1255.51
//
Query:       MMETSP1137-20121227|6760_1  [L=264]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (264 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       164  (0.0399805); expected 82.0 (0.02)
Passed bias filter:                      101  (0.0246221); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.17s 00:00:00.45 Elapsed: 00:00:00.39
# Mc/sec: 893.46
//
Query:       MMETSP1137-20121227|6761_1  [L=417]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.1e-41  140.8   0.0    1.4e-41  140.5   0.0    1.1  1  TIGR03592 yidC_oxa1_cterm: membrane protein insertase, YidC/Oxa1 family


Domain annotation for each model (and alignments):
>> TIGR03592  yidC_oxa1_cterm: membrane protein insertase, YidC/Oxa1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  140.5   0.0   3.4e-45   1.4e-41       2     191 .]     132     345 ..     131     345 .. 0.90

  Alignments for each domain:
  == domain 1    score: 140.5 bits;  conditional E-value: 3.4e-45
   TIGR03592   2 yglaIilltlvirllllplsakqiksmrkmqelqpklkeiqekykedrqklqqemmklykeegvnplaGcLPlLiQmPillaLyavllrsie..lrkapflwiedlsspdptveatialla.................iyilpvlaglttflqqkls.....apkpadpaqqkimlyimpvmflfmflffpaglllYwvvsnlftilqqliinr 191
                 yg aI+++++ ++ll+lpl+++q+ s+  +++lqp+++ +++ y+++++ l+qe+  l+  ++vnplaGcLP L Q+Pi+l+ y+ +++  +  + ++ flwi +ls p +  +  ++ l+                 +  +p ++++t+ ++ kl        +++d++++ ++l ++p+m+ +++l+ p+gl lYwv++n++t++q+++i++
  MMETSP1137-20121227|6761_1 132 YGTAIFVFVVGVKLLTLPLNYNQLASAGSLKQLQPQQELVRKWYGDNKNILNQEVGLLFESQQVNPLAGCLPALAQIPIFLGVYYSVTSIAKakIFNEGFLWIPNLSGPIADRTEGLSWLTenwangapplgwadtlcYLSIPCILIVTQSVSLKLLgsfeaLGENNDNKTAALALRLLPLMLGWFALNAPSGLGLYWVFNNILTTAQTVVIKK 345
                 89*************************************************************************************4333333459***********9996666666666999999999999888754468888899999999886677776777888899**************************************9975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (417 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       124  (0.0302292); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.31u 0.10s 00:00:00.41 Elapsed: 00:00:00.41
# Mc/sec: 1342.43
//
Query:       MMETSP1137-20121227|6762_1  [L=187]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (187 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       116  (0.0282789); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.16s 00:00:00.36 Elapsed: 00:00:00.39
# Mc/sec: 632.87
//
Query:       MMETSP1137-20121227|6764_1  [L=766]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (766 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        60  (0.014627); expected 82.0 (0.02)
Passed bias filter:                       44  (0.0107265); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.14s 00:00:00.59 Elapsed: 00:00:00.59
# Mc/sec: 1713.62
//
Query:       MMETSP1137-20121227|6765_1  [L=133]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (133 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       247  (0.0602145); expected 82.0 (0.02)
Passed bias filter:                      159  (0.0387616); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.15s 00:00:00.35 Elapsed: 00:00:00.28
# Mc/sec: 605.33
//
Query:       MMETSP1137-20121227|6766_1  [L=204]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (204 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.12s 00:00:00.31 Elapsed: 00:00:00.32
# Mc/sec: 841.43
//
Query:       MMETSP1137-20121227|6767_1  [L=72]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        46  (0.011214); expected 82.0 (0.02)
Passed bias filter:                       38  (0.00926377); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.14s 00:00:00.27 Elapsed: 00:00:00.26
# Mc/sec: 365.51
//
Query:       MMETSP1137-20121227|6768_1  [L=267]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.7e-29   98.7   0.0    9.3e-29   98.0   0.0    1.3  1  TIGR00357 TIGR00357: methionine-R-sulfoxide reductase


Domain annotation for each model (and alignments):
>> TIGR00357  TIGR00357: methionine-R-sulfoxide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.0   0.0   2.3e-32   9.3e-29       2     128 ..      66     199 ..      65     204 .. 0.90

  Alignments for each domain:
  == domain 1    score: 98.0 bits;  conditional E-value: 2.3e-32
   TIGR00357   2 ksdeelkkkltklqyevtqnkgtekpftneykknkeeGiyvditsgeplfssedkfdsgcGWPsftkpiseeavkyekdeslgmirtevrskradahlGhvfddG.......PektGkryCinsaalkfiplee 128
                 +s+ e+ + l++ qy v+++ gte p ++ + k+k+ G + ++ + +plf++++kf+sg+GWPsf +++   +  +++     +   e+r+  + +hlG vf dG          tGkryCi++aal f p++ 
  MMETSP1137-20121227|6768_1  66 HSEREWLRLLSEDQYFVLRQGGTESPNSSPLVKEKRPGRFLCAGCATPLFDASQKFESGTGWPSFASALPAVETXQTSMMGAALLGAELRCGVCGGHLGDVFLDGmlfvgtaAALTGKRYCIDGAALLFEPADG 199
                 6899*****************************************************************77777777777888899******************955554433689*************99875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (267 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        77  (0.0187713); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.22u 0.15s 00:00:00.37 Elapsed: 00:00:00.27
# Mc/sec: 1305.23
//
Query:       MMETSP1137-20121227|6769_1  [L=293]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (293 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       112  (0.0273038); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.16s 00:00:00.40 Elapsed: 00:00:00.33
# Mc/sec: 1171.90
//
Query:       MMETSP1137-20121227|6770_1  [L=356]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      2e-27   93.7   7.0    2.7e-27   93.3   4.9    1.1  1  TIGR00879 SP: MFS transporter, sugar porter (SP) family
    1.1e-23   81.7   6.5    1.4e-23   81.3   4.5    1.1  1  TIGR00895 2A0115: MFS transporter, aromatic acid:H+ symporter (AAHS) family
    2.8e-20   70.4   2.9    2.8e-20   70.4   2.0    1.3  1  TIGR00898 2A0119: cation transport protein
    4.3e-16   56.8   0.4    5.8e-16   56.3   0.2    1.1  1  TIGR00891 2A0112: MFS transporter, sialate:H+ symporter (SHS) family
      7e-10   37.0  10.4    1.4e-09   36.1   7.2    1.5  1  TIGR00880 2_A_01_02: multidrug resistance protein
    1.4e-06   24.3   5.7    1.8e-06   24.0   4.0    1.0  1  TIGR01299 synapt_SV2: synaptic vesicle protein SV2
    1.4e-05   22.2   4.9    2.3e-05   21.5   3.4    1.2  1  TIGR00886 2A0108: nitrite transporter
    1.9e-05   21.6   1.6    2.5e-05   21.2   1.1    1.2  1  TIGR00893 2A0114: D-galactonate transporter
      2e-05   22.0   6.4    2.9e-05   21.5   4.4    1.2  1  TIGR00710 efflux_Bcr_CflA: drug resistance transporter, Bcr/CflA subfamily
    0.00041   17.0   2.5    0.00054   16.6   1.8    1.1  1  TIGR00711 efflux_EmrB: drug resistance MFS transporter, drug:H+ antiporter-2 (14 Spanner) (DHA2) family
    0.00087   16.3   3.3     0.0013   15.7   2.3    1.3  1  TIGR00883 2A0106: MFS transporter, metabolite:H+ symporter (MHS) family protein
     0.0031   14.3   4.7     0.0038   14.0   3.3    1.1  1  TIGR00890 2A0111: oxalate/formate antiporter
     0.0054   13.6   5.4     0.0087   12.9   3.7    1.2  1  TIGR00881 2A0104: phosphoglycerate transporter family protein
  ------ inclusion threshold ------
      0.012   12.8   8.1      0.016   12.4   5.6    1.2  1  TIGR00900 2A0121: H+ Antiporter protein
      0.016   11.5   1.8      0.023   11.0   1.2    1.1  1  TIGR00894 2A0114euk: Na(+)-dependent inorganic phosphate cotransporter


Domain annotation for each model (and alignments):
>> TIGR00879  SP: MFS transporter, sugar porter (SP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   93.3   4.9   9.9e-30   2.7e-27      69     252 ..      35     206 ..      11     212 .. 0.87

  Alignments for each domain:
  == domain 1    score: 93.3 bits;  conditional E-value: 9.9e-30
   TIGR00879  69 fgYdtavisaalallkfefkftsnlsdasssqwglvvsillvGgligalfagylsdrfgrkkslliiallfvigailsllaatalsvevlivgRvllGigvGiasalvPlYisEiApkalRgalvslyqlaitfGilvaaifgsgklvanntlgwriplglqlipalllllglfflPesprwLv 252
                  gY   v+++a+ ll     +        +++++l++si ++G+l+g++++g + d +gr+++l   a+ f+++++l+   a+a ++ v+i+gR+l+G+g G+a ++ P+Y++E +p   Rg++v+ +++++t G l+a + +   l++    gwr++lgl+   a++  l+ + +Pe+  wL 
  MMETSP1137-20121227|6770_1  35 NGYCLCVVAGAVPLLTEMYNL-------QTLEKSLLISINVLGALTGGVIGGLVADVLGRRAGLRLCAASFLVASLLM---AFAPNFSVVIFGRFLAGLGTGLAGVINPIYLAETSPSVYRGQCVTANEILLTGGCLLALLAN--MLLQAAPHGWRLMLGLSGPLAAVSTLATLCVPETDAWLE 206
                 555555555555555544444.......4899**********************************************...44444559******************************************************..899999*******************************95 PP

>> TIGR00895  2A0115: MFS transporter, aromatic acid:H+ symporter (AAHS) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.3   4.5   5.1e-26   1.4e-23      13     205 ..      19     211 ..      10     246 .. 0.87

  Alignments for each domain:
  == domain 1    score: 81.3 bits;  conditional E-value: 5.1e-26
   TIGR00895  13 ryqirvlilsflivlvdGldllvlgfaapalskewgldkvelGfllsagLiGmvlGallfgplaDrigRkrvllvsillfsvftlasalatnvtqLlvlRflaglGlGgllpnliaLvsEyapkrfratvvglvavGyaiGaavggllaalli..pafgWrslflvggiiplllllllikvLpEsikflvekkpe 205
                 + q+   ++++ ++ ++G+ l v++ a p l++ ++l++ e   l+s+ ++G++ G++++g +aD +gR+  l ++   f v +l++a+a n+   ++ RflaglG G +  +    ++E +p+ +r++ v+   +  + G+ + +lla +l+  + +gWr ++ + g ++++   l +  +pE  ++l +++ +
  MMETSP1137-20121227|6770_1  19 SEQVYGCVVALSLATINGYCLCVVAGAVPLLTEMYNLQTLEKSLLISINVLGALTGGVIGGLVADVLGRRAGLRLCAASFLVASLLMAFAPNFSVVIFGRFLAGLGTGLAGVINPIYLAETSPSVYRGQCVTANEILLT-GGCLLALLANMLLqaAPHGWRLMLGLSGPLAAV-STLATLCVPETDAWLEQRRGK 211
                 556666788888999*********************************************************************************************9988889999***************999766.666667888888733569*********944443.34556789*******999655 PP

>> TIGR00898  2A0119: cation transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.4   2.0     1e-22   2.8e-20     121     272 ..      56     208 ..      44     214 .. 0.88

  Alignments for each domain:
  == domain 1    score: 70.4 bits;  conditional E-value: 1e-22
   TIGR00898 121 vcedawkvkltqsvvfvGvLlGslvlGqlsDrfGRkkvLllstlvtavsgvltafspnytvflvlrlLvGvgiagivvvalvLitEflpkkaRaivgilievffalGllllallAYlird.....WRwLlllvslPlvlfl.vlvwfvpESpRwlisq 272
                 +      + l++s+ ++G L G+++ G ++D +GR+ +L l     +v ++l+af+pn++v+++ r+L+G+g++ + v+  +  +E  p+ +R  +++  e+  + G l lallA ++ +     WR + l +s Pl ++  ++ ++vpE   wl ++
  MMETSP1137-20121227|6770_1  56 QT---LEKSLLISINVLGALTGGVIGGLVADVLGRRAGLRLCAASFLVASLLMAFAPNFSVVIFGRFLAGLGTGLAGVINPIYLAETSPSVYRGQCVTANEILLTGGCL-LALLANMLLQaaphgWRLM-LGLSGPLAAVStLATLCVPETDAWLEQR 208
                 44...7899********************************************************************************************99998875.78999888777899***65.666777776651566*******999765 PP

>> TIGR00891  2A0112: MFS transporter, sialate:H+ symporter (SHS) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.3   0.2   2.1e-18   5.8e-16      23     205 ..      34     215 ..      20     227 .. 0.87

  Alignments for each domain:
  == domain 1    score: 56.3 bits;  conditional E-value: 2.1e-18
   TIGR00891  23 ldafdfflvalvlaevaeefdrttkdvafllsaalivrsvGalllGlwaDrvgrrlplvtsvvlfsvatllcafaptyekllivrlviGigmgGeyGlaaalaiedvPkklrsvlsGllisgyavGfvlaavvysvvvnvlgdsWriLfflsilpiilalflrkrvpeaevwkeklkakklvk 205
                 ++++   +va ++  + e +++ t + + l+s+ ++    G+++ Gl+aD  grr  l  +   f va+ll afap++ +++  r++ G+g g    +   +  e  P   r+          + G +la ++  ++      +Wr++ +ls  ++ ++ +  + vpe++ w e++ +k ++ 
  MMETSP1137-20121227|6770_1  34 INGYCLCVVAGAVPLLTEMYNLQTLEKSLLISINVLGALTGGVIGGLVADVLGRRAGLRLCAASFLVASLLMAFAPNFSVVIFGRFLAGLGTGLAGVINPIYLAETSPSVYRGQCVTANEILLTGGCLLALLANMLLQ-AAPHGWRLMLGLSGPLAAVSTLATLCVPETDAWLEQRRGKSPTP 215
                 566666777777888999************************************************************************97666667889999********98776655555668888776666555.55569********************************9999875 PP

>> TIGR00880  2_A_01_02: multidrug resistance protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.1   7.2     5e-12   1.4e-09       2     139 ..      62     200 ..      61     201 .. 0.95

  Alignments for each domain:
  == domain 1    score: 36.1 bits;  conditional E-value: 5e-12
   TIGR00880   2 lllagyAlgqlvvsplsglltdrvGrkpvllvglfifvlsqllfalssnitvliiarilqGfgaaaalvagaaliadiikeeersvalgllsagialgpilGpllGavla.qalgwralflilallallafilllfllp 139
                 ll+ +  lg l  + + gl++d +Gr+  l +  + f++++ll+a++ n++v i+ r+l+G+g++ a v+   ++a+ +++ +r++ +    + ++ g++l++l+  +l  +  gwr ++ + + la+++++++l++ +
  MMETSP1137-20121227|6770_1  62 LLISINVLGALTGGVIGGLVADVLGRRAGLRLCAASFLVASLLMAFAPNFSVVIFGRFLAGLGTGLAGVINPIYLAETSPSVYRGQCVTANEILLTGGCLLALLANMLLQaAPHGWRLMLGLSGPLAAVSTLATLCVPE 200
                 6778888999999********************************************************************************************9999977789***************999998865 PP

>> TIGR01299  synapt_SV2: synaptic vesicle protein SV2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.0   4.0   6.4e-09   1.8e-06     178     325 ..      34     182 ..       4     198 .. 0.80

  Alignments for each domain:
  == domain 1    score: 24.0 bits;  conditional E-value: 6.4e-09
   TIGR01299 178 adgvevfvvgfvlpsaekdlclsdsnkgllglivylgmmvgaflwggladklgrkqsllislsvnsvfaflssfvqgygtfllcrllsgvgiggaipivfsyfaevlarekrgehlswlcmfwmiggvyaaama...waiiphygwsfsmg 325
                  +g  + vv   +p   +   l+  +k ll +i  lg + g  + g +ad lgr+  l ++ +   v ++l +f   + + ++ r+l+g+g g a  i   y+ae      rg+ ++   ++ + gg   a +a       ph gw + +g
  MMETSP1137-20121227|6770_1  34 INGYCLCVVAGAVPLLTEMYNLQTLEKSLLISINVLGALTGGVIGGLVADVLGRRAGLRLCAASFLVASLLMAFAPNFSVVIFGRFLAGLGTGLAGVINPIYLAETSPSVYRGQCVTANEIL-LTGGCLLALLAnmlLQAAPH-GWRLMLG 182
                 36777778888888888888899999******************999**********************************************99999999*****9999999998876655.45555544444000444454.7877776 PP

>> TIGR00886  2A0108: nitrite transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.5   3.4   8.5e-08   2.3e-05      27     106 ..      48     126 ..      30     130 .. 0.90

  Alignments for each domain:
  == domain 1    score: 21.5 bits;  conditional E-value: 8.5e-08
   TIGR00886  27 iikedlgLskaqlallvavpvlatavlRiilgflvdkfGpRkttallllllaiPllllalavssfsellllrlliGiaGa 106
                 ++ e ++L++ ++ ll  ++vl++++  +i g+++d +G R  + l ++  ++++ll+a+a  +fs+ +  r+l+G++ +
  MMETSP1137-20121227|6770_1  48 LLTEMYNLQTLEKSLLISINVLGALTGGVIGGLVADVLGRRAGLRLCAASFLVASLLMAFAP-NFSVVIFGRFLAGLGTG 126
                 345779********************************************************.*************9865 PP

>> TIGR00893  2A0114: D-galactonate transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   1.1   9.1e-08   2.5e-05      14     166 ..      43     196 ..      20     223 .. 0.73

  Alignments for each domain:
  == domain 1    score: 21.2 bits;  conditional E-value: 9.1e-08
   TIGR00893  14 SiAavtlkedLglsaaqyglvfsafsigyvlfqlpggllldriGakktlavaivlWglftllqafatalvslivlRvllGlaEaplfPgiikivasWFPakeratavsifnsaqalgaiiggplvgwilvefs..WqlvFiieGvlaiilgvlil 166
                 + A++ l e  +l++ + +l +s++ +g + +++ ggl+ d +G +  l + +  + + +ll+afa ++   i  R+l Gl  + +   +++++a+  P+  r+  v   n     g+ +++ l+ ++l++    W+l+  ++G la++  ++ l
  MMETSP1137-20121227|6770_1  43 AGAVPLLTEMYNLQTLEKSLLISINVLGALTGGVIGGLVADVLGRRAGLRLCAASFLVASLLMAFAPNFSVVIFGRFLAGLGTGLAGVINPIYLAETSPSVYRGQCVTA-NEILLTGGCLLALLANMLLQAAPhgWRLMLGLSGPLAAVSTLATL 196
                 4566667777788888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888766543.444445555555555555444333488887777777766554444 PP

>> TIGR00710  efflux_Bcr_CflA: drug resistance transporter, Bcr/CflA subfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.5   4.4     1e-07   2.9e-05      27     113 ..      45     131 ..      24     138 .. 0.89

  Alignments for each domain:
  == domain 1    score: 21.5 bits;  conditional E-value: 1e-07
   TIGR00710  27 alpeiakdlsvsasavqltltlyllglavgqLllGplsDsyGRkpvlLlgllvfalsslvlalsenietllvlRflqafgasaalVi 113
                 a+p +++ ++ +    +l  +  +lg   g  + G ++D +GR+  l l+   f ++sl +a+++n  + +  Rfl ++g   a Vi
  MMETSP1137-20121227|6770_1  45 AVPLLTEMYNLQTLEKSLLISINVLGALTGGVIGGLVADVLGRRAGLRLCAASFLVASLLMAFAPNFSVVIFGRFLAGLGTGLAGVI 131
                 6777777777777777888888899999999*************************************************9998887 PP

>> TIGR00711  efflux_EmrB: drug resistance MFS transporter, drug:H+ antiporter-2 (14 Spanner) (DHA2) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   1.8     2e-06   0.00054      20     128 ..      41     149 ..      21     161 .. 0.76

  Alignments for each domain:
  == domain 1    score: 16.6 bits;  conditional E-value: 2e-06
   TIGR00711  20 ivnvalptlaadlgaslsevqWviTsymvanaivIpltgwlakrlgerklflvsvlaFtlssllcgvannlelliifRviQgfggglliplseslllseyppekrglal 128
                 +v+ a+p l+  +  ++ e + +i   ++ + +   + g +a+ lg+r    + +  F ++sll + a+n++++i++R + g+g gl  ++    l++  p+  rg+ +
  MMETSP1137-20121227|6770_1  41 VVAGAVPLLTEMYNLQTLEKSLLISINVLGALTGGVIGGLVADVLGRRAGLRLCAASFLVASLLMAFAPNFSVVIFGRFLAGLGTGLAGVINPIYLAETSPSVYRGQCV 149
                 55555666665555555555666655666666667788899999999998888899******************************99999988899988888888765 PP

>> TIGR00883  2A0106: MFS transporter, metabolite:H+ symporter (MHS) family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   2.3   4.9e-06    0.0013      50     195 ..      73     203 ..      50     220 .. 0.84

  Alignments for each domain:
  == domain 1    score: 15.7 bits;  conditional E-value: 4.9e-06
   TIGR00883  50 lGaivfGalgDrlGRkktLvvtlllMgigtvligllPsyatiGiwApilLlllrliQGlslGgEyggaalllaEsApegkrglygsfqqvgasvglllaalvvlllsallseealleWgWRiPFlvsvvlvligLylRlkleEtpv 195
                  G+++ G ++D lGR++ L +  +   ++++l++  P+++        +++  r++ Gl+ G       ++laE++p+  rg   +++++  + g+lla l+ +ll+a          gWR+   +s  l++++ +  l + Et +
  MMETSP1137-20121227|6770_1  73 TGGVIGGLVADVLGRRAGLRLCAASFLVASLLMAFAPNFS--------VVIFGRFLAGLGTGLAGVINPIYLAETSPSVYRGQCVTANEILLTGGCLLALLANMLLQAAP-------HGWRLMLGLSGPLAAVSTLATLCVPETDA 203
                 599***********************************97........6899*******9998777788*******************************9999998843.......46666666666666655555555555555 PP

>> TIGR00890  2A0111: oxalate/formate antiporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   3.3   1.4e-05    0.0038     209     304 ..      26     122 ..      16     191 .. 0.85

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 1.4e-05
   TIGR00890 209 vlyvsfllaavsgllligllkaygrsli.ldvgalvlavsissllngggRlvlGavsDkigrlktmsivlsisavlllslllikkisdvlflAlval 304
                 v+++s+++++   l +++ +++   ++  l++ + +l+ si  l  ++g ++ G v+D +gr   + +  +  +v  l+++++++ s v+f   +a 
  MMETSP1137-20121227|6770_1  26 VVALSLATINGYCLCVVAGAVPLLTEMYnLQTLEKSLLISINVLGALTGGVIGGLVADVLGRRAGLRLCAASFLVASLLMAFAPNFSVVIFGRFLAG 122
                 78899999999999999999999999988999999999**9999999999*****************999999999999***999999988555554 PP

>> TIGR00881  2A0104: phosphoglycerate transporter family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.9   3.7   3.2e-05    0.0087      17     169 ..      45     197 ..      40     204 .. 0.84

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 3.2e-05
   TIGR00881  17 alpelqeeiglsktdlGlllsafsiaYgiskfvvgvvsDrvsarvflaigLilvaivnlflgfssslwvliallalnGlfqglgwppcgrlltkwfsrserGtvvaiwnishnvggallpplvllai.alllswhvvfivpgiiaiivslilll 169
                 a+p l e + l+  +  ll+s   +    + ++ g+v+D  + r+ l +      +++l+++f++++ v i  ++l Gl  gl+ +++  +l++  +   rG++v    i    gg ll+ l+ + + a    w+ ++ ++g +a +  l  l 
  MMETSP1137-20121227|6770_1  45 AVPLLTEMYNLQTLEKSLLISINVLGALTGGVIGGLVADVLGRRAGLRLCAASFLVASLLMAFAPNFSVVIFGRFLAGLGTGLAGVINPIYLAETSPSVYRGQCVTANEI-LLTGGCLLALLANMLLqAAPHGWRLMLGLSGPLAAVSTLATLC 197
                 6788888888888888888888777777788999***********9999999999**********************************9****9999999999987666.5568888887765555145578999999999988887776655 PP

>> TIGR00900  2A0121: H+ Antiporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   5.6   5.9e-05     0.016     232     353 ..      45     164 ..      25     173 .. 0.82

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 5.9e-05
   TIGR00900 232 llpyvtskvlrrssvevgvvlaafglGallGalllgllgkylkraalitiavlviglailvlgllnpnlllllvlaaaiGvvvglinviigtllqrsvpaellgRVfglqeslssaaaplgl 353
                  +p+ t+   +++ +e +++ +   lGal G+++ gl++  l r+a + + +    +a l++++++ n+ +++   + +G++ gl  vi+  +l+++ p+ ++g  + ++e l  +   l l
  MMETSP1137-20121227|6770_1  45 AVPLLTEM-YNLQTLEKSLLISINVLGALTGGVIGGLVADVLGRRAGLRLCAASFLVASLLMAFAP-NFSVVIFGRFLAGLGTGLAGVINPIYLAETSPSVYRGQCVTANEILLTGGCLLAL 164
                 45666666.89999999999999*************999999888888877667777777777788.6*****************************************9999877666665 PP

>> TIGR00894  2A0114euk: Na(+)-dependent inorganic phosphate cotransporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   1.2   8.5e-05     0.023      71     214 ..      53     194 ..      46     200 .. 0.80

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 8.5e-05
   TIGR00894  71 faWseklqGlilssvfygslilqipvGylakkygtkkvigaalllssvlslliPiaaavgvalvivlRvlqGlaeglvspaqhellakWiPPkERsrlvsavlsGaqlGtlivlpisGlicesd.lgWpavfYifgivgtvvlil 214
                 ++ ++  + l++s   +g+l+  + +G +a+ +g +  +    +   v sll+  a +    +vi+ R+l Gl++gl+   +   la   P   R++ v+a     + G  ++ +++ ++ +    gW  +  ++g  ++v +++
  MMETSP1137-20121227|6770_1  53 YNLQTLEKSLLISINVLGALTGGVIGGLVADVLGRRAGLRLCAASFLVASLLMAFAPNF--SVVIFGRFLAGLGTGLAGVINPIYLAETSPSVYRGQCVTANEI-LLTGGCLLALLANMLLQAApHGWRLMLGLSGPLAAVSTLA 194
                 5555566677888889999***************9988877777777777777776665..5699*****************99***************99988.555555555555666655559**99999999888887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (356 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       110  (0.0268162); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                        20  (0.00487567); expected 4.1 (0.001)
Passed Fwd filter:                        15  (0.00365675); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.36u 0.14s 00:00:00.50 Elapsed: 00:00:00.69
# Mc/sec: 680.99
//
Query:       MMETSP1137-20121227|6771_1  [L=50]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (50 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        75  (0.0182838); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.15s 00:00:00.27 Elapsed: 00:00:00.28
# Mc/sec: 235.69
//
Query:       MMETSP1137-20121227|6772_1  [L=361]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (361 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       183  (0.0446124); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.15s 00:00:00.44 Elapsed: 00:00:00.41
# Mc/sec: 1162.15
//
Query:       MMETSP1137-20121227|6773_1  [L=790]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00088   15.2   0.1        0.5    6.1   0.0    3.2  2  TIGR00870 trp: transient-receptor-potential calcium channel protein


Domain annotation for each model (and alignments):
>> TIGR00870  trp: transient-receptor-potential calcium channel protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    2.7   0.0    0.0014       5.6     130     156 ..     472     498 ..     457     520 .. 0.81
   2 !    6.1   0.0   0.00012       0.5     126     158 ..     604     636 ..     570     649 .. 0.72

  Alignments for each domain:
  == domain 1    score: 2.7 bits;  conditional E-value: 0.0014
   TIGR00870 130 kgitalilAihkqnyeivklLlekgas 156
                 +g t+l+ A++  +   v+l l++ga+
  MMETSP1137-20121227|6773_1 472 RGATPLHRAAISGDADAVELFLQNGAR 498
                 677888888888888888888888886 PP

  == domain 2    score: 6.1 bits;  conditional E-value: 0.00012
   TIGR00870 126 seftkgitalilAihkqnyeivklLlekgasve 158
                 ++  + +tal+lA+   +    ++Ll ++a v+
  MMETSP1137-20121227|6773_1 604 ERNKFQQTALHLAARLGSADATRMLLSSKACVN 636
                 344567888888888888888888888888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (790 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       106  (0.0258411); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.13s 00:00:00.64 Elapsed: 00:00:00.54
# Mc/sec: 1930.95
//
Query:       MMETSP1137-20121227|6774_1  [L=243]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (243 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       123  (0.0299854); expected 82.0 (0.02)
Passed bias filter:                       99  (0.0241346); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.14s 00:00:00.37 Elapsed: 00:00:00.33
# Mc/sec: 971.92
//
Query:       MMETSP1137-20121227|6775_1  [L=356]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (356 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        90  (0.0219405); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.13s 00:00:00.38 Elapsed: 00:00:00.53
# Mc/sec: 886.57
//
Query:       MMETSP1137-20121227|6776_1  [L=715]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.8e-33  112.7   0.1    9.1e-16   55.5   0.2    2.6  2  TIGR01733 AA-adenyl-dom: amino acid adenylation domain
      2e-24   83.8   0.0    1.1e-15   54.9   0.0    2.1  2  TIGR03098 ligase_PEP_1: acyl-CoA ligase (AMP-forming), exosortase A-associated
      5e-23   79.5   0.0    2.2e-12   44.4   0.0    2.6  2  TIGR01923 menE: O-succinylbenzoate-CoA ligase
    2.7e-18   63.5   0.2    9.4e-10   35.3   0.0    2.2  2  TIGR03205 pimA: dicarboxylate--CoA ligase PimA
    4.9e-13   46.3   0.0    9.3e-06   22.3   0.0    2.7  3  TIGR01734 D-ala-DACP-lig: D-alanine--poly(phosphoribitol) ligase, subunit 1
    6.4e-13   45.6   0.0    1.4e-10   37.8   0.0    2.2  2  TIGR02188 Ac_CoA_lig_AcsA: acetate--CoA ligase
    1.2e-12   45.2   0.1    1.1e-09   35.4   0.1    2.8  2  TIGR02262 benz_CoA_lig: benzoate-CoA ligase family
    1.7e-12   44.6   0.9    2.4e-11   40.9   0.5    2.2  1  TIGR03208 cyc_hxne_CoA_lg: cyclohexanecarboxylate-CoA ligase
    7.7e-07   25.5   0.0    0.00017   17.8   0.0    2.5  2  TIGR02275 DHB_AMP_lig: (2,3-dihydroxybenzoyl)adenylate synthase
    0.00011   17.5   0.0     0.0013   14.0   0.0    2.0  2  TIGR03443 alpha_am_amid: L-aminoadipate-semialdehyde dehydrogenase
     0.0002   17.9   0.1     0.0004   16.9   0.0    1.4  1  TIGR02316 propion_prpE: propionate--CoA ligase
  ------ inclusion threshold ------
      0.022   10.7   0.1      0.078    8.9   0.1    1.8  2  TIGR01217 ac_ac_CoA_syn: acetoacetate-CoA ligase


Domain annotation for each model (and alignments):
>> TIGR01733  AA-adenyl-dom: amino acid adenylation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.5   0.2   2.7e-18   9.1e-16       1     151 [.     155     340 ..     155     367 .. 0.81
   2 !   53.5   0.0     1e-17   3.5e-15     248     405 ..     448     614 ..     415     617 .. 0.75

  Alignments for each domain:
  == domain 1    score: 55.5 bits;  conditional E-value: 2.7e-18
   TIGR01733   1 tYreLderanrlAraLkeaggvrpgdrVavllersvelvvailavlkaGaayvpldpeyPaeRlaailedakakllltdeelaeelaeval...........eailleeleekaaedasaeeaaeak.................................skpddlayviyTSGStGkPKgVlvehrslvnllas 151
                 tY+e +++  +l+  + + ++++pgd V++++e +++ + + +a +    + v + ++  +e la+ ++++kakl+++d++l ++++++a+            +++ +++++ + ++         +                                 +k++d+a v+yTSG+tG PKgV+++h++ v +   
  MMETSP1137-20121227|6776_1 155 TYGEYRTALHALGGGMVKFARLKPGDHVVIYAETQLDWMLSCIAAFSQSLVVVTVYATLGEEGLAHGVKQTKAKLIIADSKLLPKVSAAARkhkesmgncnhVIAISDPVQTPDPKN---------EsvvsaalreltesgwksqtldeaianagippnpPKAEDTAVVMYTSGTTGLPKGVIITHANYVGMQVG 340
                 9***************99999*************************************************************99999888767676666553111122222222222.........1233334556788889999999999999999999999999**********************9977655 PP

  == domain 2    score: 53.5 bits;  conditional E-value: 1e-17
   TIGR01733 248 taelverlraraeevrlinlYGpTEttvvvtveevsadeeseeepvpiGrplanvrlyvldea.........lrpvpvgvvGELyigGagvarGYlnrpeltaerFvedpfaksege....rlYrTGDlvrlradGeleflGRaDdqvKi.rGfRielgEieaalaelpgve 405
                  + +v+ + ++a ++   ++YG TEt+ +++v+    d+++      +G p + + + + d +         ++p      GE +igG+ v +GYl +p+   +  v+++ ++ +      r+++TGD++++++dG+l+++ R+ d vK+ +G  + l+ +e+al+++p ve
  MMETSP1137-20121227|6776_1 448 LSPKVQAFVQTAFNAPCRQGYGLTETCAATCVQM-GCDNTTG----AVGPPTPSACIKLKDWEegnyknadlHNPEVGMRRGEVLIGGPLVCSGYLVDPDDPDADVVQKNKEEFSVDekgvRWFHTGDIGQFTPDGNLQIIDRKKDLVKLqQGEYVALSKVENALKACPLVE 614
                 4455666555666788999*******99887654.3333334....467777766666665443333322322333334579*******************99999988766544334567****************************955****************9997 PP

>> TIGR03098  ligase_PEP_1: acyl-CoA ligase (AMP-forming), exosortase A-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.9   0.0   3.2e-18   1.1e-15      27     189 ..     155     335 ..     148     340 .. 0.75
   2 !   26.6   0.0   1.2e-09   4.3e-07     295     449 ..     454     618 ..     427     652 .. 0.75

  Alignments for each domain:
  == domain 1    score: 54.9 bits;  conditional E-value: 3.2e-18
   TIGR03098  27 tyaaLseevkalasgl.kalglkrgeRvaiylekrletvlalfaaslaggvfvpinPlLkaeqvayilkDcnvkllvtskerldaledalak....chdlrtlilvdepekasekka.gaevlsweklkaleeaa............akvdvidddlaailYtsGstGrPkgvvlshrnlv 189
                 ty + + + +al  g+ k   lk g+ v iy+e +l+ +l+ +aa   + v v +   L +e +a+ +k +++kl+++ ++ l +++ a+ k    + + +++i + +p ++   k+  + + ++++l+  + +             ++ +   +d a ++YtsG tG Pkgv+++h+n v
  MMETSP1137-20121227|6776_1 155 TYGEYRTALHALGGGMvKFARLKPGDHVVIYAETQLDWMLSCIAAFSQSLVVVTVYATLGEEGLAHGVKQTKAKLIIADSKLLPKVSAAARKhkesMGNCNHVIAISDPVQTPDPKNeSVVSAALRELTESGWKSqtldeaianagiPPNPPKAEDTAVVMYTSGTTGLPKGVIITHANYV 335
                 55555555666655441445699************************************************************888776554111155789*******99887766533333444444322211111122224445677778889***********************976 PP

  == domain 2    score: 26.6 bits;  conditional E-value: 1.2e-09
   TIGR03098 295 rlRkllpeaklylmYGLteafRstyLdPeevdrrPdsiGkaipnaevlvlr.edGsecape....e....eGelvhrGalvakGYWndpekt.aerfrplpkrqselkltelavfsGDlvrrDeeGflyfvgRrdemikt.sGyRvsPteveevllatglvaeavv 449
                 ++ +++ +a     YGLte   +t ++    d+  +++G   p a +     e+G+  +++    e     Ge+   G+lv  GY  dp+   a + +++ ++ s  ++  +  + GD+++   +G l ++ R+ +++k   G  v+   ve++l a +lv+  + 
  MMETSP1137-20121227|6776_1 454 AFVQTAFNAPCRQGYGLTETCAATCVQ-MGCDNTTGAVGPPTPSACIKLKDwEEGNYKNADlhnpEvgmrRGEVLIGGPLVCSGYLVDPDDPdADVVQKNKEEFSVDEKGVRWFHTGDIGQFTPDGNLQIIDRKKDLVKLqQGEYVALSKVENALKACPLVEMPMC 618
                 555555566666779999999888887.45799999999999999888764366664433222223222269*****************986155555555555555555566779***********************637******************986555 PP

>> TIGR01923  menE: O-succinylbenzoate-CoA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.0   0.0   3.7e-11   1.3e-08      21     142 ..     176     338 ..     169     350 .. 0.77
   2 !   44.4   0.0   6.4e-15   2.2e-12     248     387 ..     461     626 ..     426     645 .. 0.79

  Alignments for each domain:
  == domain 1    score: 32.0 bits;  conditional E-value: 3.7e-11
   TIGR01923  21 vrkgdvvallaenslelvllllallllgveiallntrLtekelttqlkelkvellltdslleekedlqaisldeleaeae..........................aeevs.................ls.asfsldkiatlifTSgstGkpKavvqtfrnhyasa 142
                 ++ gd v ++ae +l+ +l+ +a++  + +++ +   L e+ l++ +k++k +l+++ds+l  k+   a + +e + + +                                                +     + +++a++++TSg+tG pK+v +t+ n++   
  MMETSP1137-20121227|6776_1 176 LKPGDHVVIYAETQLDWMLSCIAAFSQSLVVVTVYATLGEEGLAHGVKQTKAKLIIADSKLLPKVSAAARKHKESMGNCNhviaisdpvqtpdpknesvvsaalreL---TesgwksqtldeaianagIPpNPPKAEDTAVVMYTSGTTGLPKGVIITHANYVGMQ 338
                 567999********************************************************777555555555544444678887777777766666666655550...05555556666666455533033478************************987655 PP

  == domain 2    score: 44.4 bits;  conditional E-value: 6.4e-15
   TIGR01923 248 glpiyksyGmTEtasqvvtlevevlkaktdsvGkplasveikikvdd..............keghgeilvkganlmkgYl...........ekgelteaveeqG..wlktgDlgeldgegfllvldRrddli.ISGGENiypeeiEkvlkslpevqeavvvpkeDsef 387
                 + p  ++yG TEt++  +   +  ++  t++vG p +s  ik+k  +                  ge+l+ g+ +  gYl           +k++ +  v+e+G  w++tgD+g++  +g+l + dR++dl+ +  GE +   ++E++lk  p v+  ++ ++  + +
  MMETSP1137-20121227|6776_1 461 NAPCRQGYGLTETCAATCVQ-MGCDN-TTGAVGPPTPSACIKLKDWEegnyknadlhnpevGMRRGEVLIGGPLVCSGYLvdpddpdadvvQKNKEEFSVDEKGvrWFHTGDIGQFTPDGNLQIIDRKKDLVkLQQGEYVALSKVENALKACPLVEMPMCYARSSESY 626
                 457779********976654.44444.4789************7655678999999987666678**************944333222221222222345667788*************************96899********************999988776655 PP

>> TIGR03205  pimA: dicarboxylate--CoA ligase PimA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.0   0.0   1.7e-09     6e-07      74     218 ..     182     335 ..     124     353 .. 0.73
   2 !   35.3   0.0   2.7e-12   9.4e-10     314     469 ..     438     613 ..     432     627 .. 0.74

  Alignments for each domain:
  == domain 1    score: 26.0 bits;  conditional E-value: 1.7e-09
   TIGR03205  74 valylgntpdhpinffgalkagarvvhlspldgeralshklsdsgarllitsd.laallp.malkfle.kglldrlivcedeswgkvgtpkaaipadprivt...ya.dfvkgaakpaewpav..kaddvallqytggttglpkgamlthgnlt 218
                 v +y     d  +  + a+     vv +    ge  l+h + ++ a+l+i+   l   +   a k  e  g  + +i  +d       + ++ + a  r +t   ++ + +++a + a  p    ka+d a++ yt gttglpkg ++th+n  
  MMETSP1137-20121227|6776_1 182 VVIYAETQLDWMLSCIAAFSQSLVVVTVYATLGEEGLAHGVKQTKAKLIIADSkLLPKVSaAARKHKEsMGNCNHVIAISDPVQTPDPKNESVVSAALRELTesgWKsQTLDEAIANAGIPPNppKAEDTAVVMYTSGTTGLPKGVIITHANYV 335
                 66677777778888888888888899999999999999999999999988643133333314455554248889999999887766666666666666666522222123344444444443212789***********************976 PP

  == domain 2    score: 35.3 bits;  conditional E-value: 2.7e-12
   TIGR03205 314 latigsggaplpvevaklferkvglklksgwgmtetcspgtghplegpdkpgsiglmlpgieldvvsldd...pkkvlppgev....gelrirgpnvtrgywnraee........saeaf.vgdr....fltgdigyvdrdgyfflvdrkkdmi.isggfnvypqmieqaiyelpav 469
                 l  +g+g apl  +v  + +   +   + g+g+tetc+  t+  +   +  g++g   p   + +   ++    +  l   ev    ge+ i gp v  gy   +++        + e f v+++    f tgdig +  dg + ++drkkd++ +  g  v    +e+a+   p v
  MMETSP1137-20121227|6776_1 438 LVFAGTGSAPLSPKVQAFVQTAFNAPCRQGYGLTETCAA-TCVQMGCDNTTGAVGPPTPSACIKLKDWEEgnyKNADLHNPEVgmrrGEVLIGGPLVCSGYLVDPDDpdadvvqkNKEEFsVDEKgvrwFHTGDIGQFTPDGNLQIIDRKKDLVkLQQGEYVALSKVENALKACPLV 613
                 6789*********************************86.444555556678999888876555554443111334566666623336999**********988765211111113344435543455689*********************9845677778888888888877766 PP

>> TIGR01734  D-ala-DACP-lig: D-alanine--poly(phosphoribitol) ligase, subunit 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0      0.25        87      26     107 ..     154     236 ..     141     268 .. 0.77
   2 !   20.1   0.0   1.2e-07   4.1e-05     140     168 ..     307     335 ..     282     339 .. 0.89
   3 !   22.3   0.0   2.7e-08   9.3e-06     342     428 ..     522     618 ..     452     643 .. 0.80

  Alignments for each domain:
  == domain 1    score: -0.7 bits;  conditional E-value: 0.25
   TIGR01734  26 ltykeLkeesdklaaalqerl.leekePiivfGkqefemlvaflgsiksGhayiPvDtsipleriekikeaaepelvievael 107
                 +ty e   +  +l+  + + + l+  + ++++ +++ + + + +++  +    + v +   +e +++  ++++++l+i+ ++l
  MMETSP1137-20121227|6776_1 154 MTYGEYRTALHALGGGMVKFArLKPGDHVVIYAETQLDWMLSCIAAFSQSLVVVTVYATLGEEGLAHGVKQTKAKLIIADSKL 236
                 56777777777776655554437777889999999999888999998888889999999999988888888888888887765 PP

  == domain 2    score: 20.1 bits;  conditional E-value: 1.2e-07
   TIGR01734 140 keddnyyiiytsGstGkPkGvqishdnLv 168
                 k +d+  ++ytsG+tG PkGv i h+n v
  MMETSP1137-20121227|6776_1 307 KAEDTAVVMYTSGTTGLPKGVIITHANYV 335
                 6789**********************987 PP

  == domain 3    score: 22.3 bits;  conditional E-value: 2.7e-08
   TIGR01734 342 ekGeivivGdsvskGylnnpe........kteeaff.eaegkrayrtGDagtieddgllfyqGrlDfqikln.GyrieLedieanlkkskyikeavv 428
                  +Ge++i G+ v  Gyl +p+        k +e f  +++g r ++tGD g+++ dg l +  r    +kl+ G  + L  +e+ lk    ++  + 
  MMETSP1137-20121227|6776_1 522 RRGEVLIGGPLVCSGYLVDPDdpdadvvqKNKEEFSvDEKGVRWFHTGDIGQFTPDGNLQIIDRKKDLVKLQqGEYVALSKVENALKACPLVEMPMC 618
                 58***************998622233332444555415678999********************9999**954999**********99888876655 PP

>> TIGR02188  Ac_CoA_lig_AcsA: acetate--CoA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.8   0.0   4.2e-13   1.4e-10      90     265 ..     154     335 ..     131     344 .. 0.75
   2 !    5.5   0.0    0.0027      0.92     480     527 ..     565     613 ..     550     634 .. 0.87

  Alignments for each domain:
  == domain 1    score: 37.8 bits;  conditional E-value: 4.2e-13
   TIGR02188  90 ltYaellrevcrlanvl.kelGvkkgdrvaiYlpmipeaviamlacaRiGavhsvvfaGfsaealaeRivdaeaklvitadeglRggkvielkkivdealekaee..svekvlvvkrtgee.va..ewkegrDvwweelvek..easaecepekldsedplfiLYtsGstGkPkGvlhttgGyl 265
                 +tY e  +    l   + k + +k gd+v+iY     + ++  +a+     v   v+a    e la+ +++++akl+i+  + l +  + + k    e++ ++++  ++++ +     ++e v+  +++e  +  w++ + +   a+a ++p++ ++ed   ++YtsG+tG PkGv+ t + y+
  MMETSP1137-20121227|6776_1 154 MTYGEYRTALHALGGGMvKFARLKPGDHVVIYAETQLDWMLSCIAAFSQSLVVVTVYATLGEEGLAHGVKQTKAKLIIADSKLLPKVSAAARK--HKESMGNCNHviAISDPVQTPDPKNEsVVsaALRELTESGWKSQTLDeaIANAGIPPNPPKAEDTAVVMYTSGTTGLPKGVIITHANYV 335
                 66777666666665544055789*****************************************************99877766655555444..4566666665445555444443333313211344445555554443323678999******************************9997 PP

  == domain 2    score: 5.5 bits;  conditional E-value: 0.0027
   TIGR02188 480 lyftGDgarrdkdGyiwilGRvDdvinv.sGhrlgtaeiesalvsheav 527
                  ++tGD  +   dG ++i+ R  d++++  G  ++ + +e+al + + v
  MMETSP1137-20121227|6776_1 565 WFHTGDIGQFTPDGNLQIIDRKKDLVKLqQGEYVALSKVENALKACPLV 613
                 799***********************98459999********9877766 PP

>> TIGR02262  benz_CoA_lig: benzoate-CoA ligase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.4   0.1   3.2e-12   1.1e-09      31     194 ..     154     342 ..     115     350 .. 0.71
   2 !    6.3   0.0    0.0022      0.74     288     430 ..     446     611 ..     420     626 .. 0.73

  Alignments for each domain:
  == domain 1    score: 35.4 bits;  conditional E-value: 3.2e-12
   TIGR02262  31 lsygeleaevrrva.aalrrlGvkreervllvlldtvdfpivflGairaGivpvalntlltaddyaylledsrarvvlvseellpvlkevlak....lpdleklvvvgak.....pagekqlaell....at...eseqek........aaatkaddpafwlyssGstGapkGvvhvhsnlrvtaelya 194
                 ++yge +++ + ++  +++   +k+ + v++     +d+ +  + a    +v v++ + l ++  a+ +++++a+ +++ ++llp + +++ k    + + +++++++++     p+ e+ +++ l     +    +   +        + + ka+d+a  +y+sG+tG pkGv+ +h+n   +   y+
  MMETSP1137-20121227|6776_1 154 MTYGEYRTALHALGgGMVKFARLKPGDHVVIYAETQLDWMLSCIAAFSQSLVVVTVYATLGEEGLAHGVKQTKAKLIIADSKLLPKVSAAARKhkesMGNCNHVIAISDPvqtpdPKNESVVSAALreltESgwkSQTLDEaianagipPNPPKAEDTAVVMYTSGTTGLPKGVIITHANYVGMQVGYG 342
                 5677777766666414556667999*************************************************************999987622224567899999987654322222222222211111111112222211111111345689*************************988776666 PP

  == domain 2    score: 6.3 bits;  conditional E-value: 0.0022
   TIGR02262 288 ealpeevGkrwkarfGvdildGvGstellhiflsnlpddvkyGtsGkpvpGyrlrlvd.dggedvadg....ev....Gellvsgpssaagywnnre........ksratfe....G.ewtrsGdkyvrnddGsytyaGrtddllkv.sGiyvspfevesaliahe 430
                  +l  +v    ++ f     +G G te        +  d   G+ G p p   ++l d ++g+   ++    ev    Ge+l+ gp  ++gy  +++        k ++ f     G  w ++Gd      dG+     r  dl+k+  G yv+  +ve+al a +
  MMETSP1137-20121227|6776_1 446 APLSPKVQAFVQTAFNAPCRQGYGLTETCAATCVQMGCDNTTGAVGPPTPSACIKLKDwEEGNYKNADlhnpEVgmrrGEVLIGGPLVCSGYLVDPDdpdadvvqKNKEEFSvdekGvRWFHTGDIGQFTPDGNLQIIDRKKDLVKLqQGEYVALSKVENALKACP 611
                 55666677777777777888888888888888888888888888898998888888887555544333222222222378999999999999866532222233266666752222236***************************8459***********97665 PP

>> TIGR03208  cyc_hxne_CoA_lg: cyclohexanecarboxylate-CoA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.9   0.5   7.1e-14   2.4e-11     189     466 ..     303     614 ..     280     653 .. 0.69

  Alignments for each domain:
  == domain 1    score: 40.9 bits;  conditional E-value: 7.1e-14
   TIGR03208 189 gdrlspddvtqliytsgttgepkgvmhtantllsnilayaerlelgegdvilmaspm...ahqtgfmyglmlplvlra.savl.qdiwnaakaaeliretgvt.....ftma..stafltdlaravkesgepvsslktflcag.apipgalverarealgakivsawgmtengavtvtkpddaeekasvtdglplpgvevkvidad.....gaklsagevg....rllvraasnfggylkrp........hln....avdaeg..wfdtgdlafldaegyiriagrskdvi.irggenipvveieallykhpava 466
                  + +  +d + ++ytsgttg pkgv+ t    +   + y    +l ++ v + +      a   g + +++ p vl+   a l  +i  ++k ++++ + g++     f  +   + +l +   + k+  + +  +  f  +g ap+ + +    ++a+ a     +g+te+ a t +++  ++   +v  g p p   +k+ d +     +a l + evg    ++l+ +    +gyl  p        + n    +vd +g  wf tgd+ + + +g ++i  r+kd++ ++ ge + + ++e+ l   p v 
  MMETSP1137-20121227|6776_1 303 PNPPKAEDTAVVMYTSGTTGLPKGVIITHANYVGMQVGYGSPHTLTSTGVKIKTGTCqgdAAVLGPTLLAFAPAVLDKvYAALnAKIAGSSKLVQMLFKWGLAsgesnFNRGvvGANWLYNK-LVFKKVQALLGGRLVFAGTGsAPLSPKVQAFVQTAFNAPCRQGYGLTETCAATCVQMGCDNTTGAV--GPPTPSACIKLKDWEegnykNADLHNPEVGmrrgEVLIGGPLVCSGYLVDPddpdadvvQKNkeefSVDEKGvrWFHTGDIGQFTPDGNLQIIDRKKDLVkLQQGEYVALSKVENALKACPLVE 614
                 4456779*********************99999************99999887654411155556666666666665412333134555566666655544431111132220022233221.2334445555566668877668******99**************************9998877766..6666666666666441112256788888853322799***********88733333222223333378888888************************885799************99988775 PP

>> TIGR02275  DHB_AMP_lig: (2,3-dihydroxybenzoyl)adenylate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.2   0.0    0.0033       1.1     164     208 ..     289     335 ..     151     338 .. 0.78
   2 !   17.8   0.0   5.1e-07   0.00017     377     455 ..     522     613 ..     418     631 .. 0.72

  Alignments for each domain:
  == domain 1    score: 5.2 bits;  conditional E-value: 0.0033
   TIGR02275 164 ksaleslaee..vkleetkadevaffqlsGGstGtpkliPrthddya 208
                 +++l+++ ++  +  ++ ka++ a +  + G+tG+pk +  th +y+
  MMETSP1137-20121227|6776_1 289 SQTLDEAIANagIPPNPPKAEDTAVVMYTSGTTGLPKGVIITHANYV 335
                 444555444423555688999**********************9995 PP

  == domain 2    score: 17.8 bits;  conditional E-value: 5.1e-07
   TIGR02275 377 eaGrlltrGPytirGyykae........ehnakaf..daeG..fyitGdlvkltkeGyivveGrakdqin.rGGekiaaeeienlllkhpav 455
                   G +l+ GP    Gy   +        + n++ f  d++G  ++ tGd+ ++t++G + +  r+kd +  + Ge +a  ++en l + p v
  MMETSP1137-20121227|6776_1 522 RRGEVLIGGPLVCSGYLVDPddpdadvvQKNKEEFsvDEKGvrWFHTGDIGQFTPDGNLQIIDRKKDLVKlQQGEYVALSKVENALKACPLV 613
                 4677899999999999876522223333467666633667755699**********************98578************9888776 PP

>> TIGR03443  alpha_am_amid: L-aminoadipate-semialdehyde dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.0     0.031        11     417     437 ..     311     331 ..     300     335 .. 0.85
   2 !   14.0   0.0   3.8e-06    0.0013     669     735 ..     554     622 ..     534     648 .. 0.78

  Alignments for each domain:
  == domain 1    score: 1.0 bits;  conditional E-value: 0.031
   TIGR03443 417 nptlsftsGseGiPkGvkGrh 437
                 ++ + +tsG++G+PkGv   h
  MMETSP1137-20121227|6776_1 311 TAVVMYTSGTTGLPKGVIITH 331
                 566789***********8666 PP

  == domain 2    score: 14.0 bits;  conditional E-value: 3.8e-06
   TIGR03443 669 refwlgpr.drlyrtGdlGrylPdGnvecsGraddqvkir.GfrielGeidthlsrhPlvrenvtlvrr 735
                 +ef +  +  r ++tGd+G+++PdGn +   r  d vk++ G  + l  ++  l   Plv   +   r 
  MMETSP1137-20121227|6776_1 554 EEFSVDEKgVRWFHTGDIGQFTPDGNLQIIDRKKDLVKLQqGEYVALSKVENALKACPLVEMPMCYARS 622
                 345333331589**************************954999**************99877666665 PP

>> TIGR02316  propion_prpE: propionate--CoA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.0   1.2e-06    0.0004      99     253 ..     170     330 ..     141     347 .. 0.73

  Alignments for each domain:
  == domain 1    score: 16.9 bits;  conditional E-value: 1.2e-06
   TIGR02316  99 alralgvrrgdrvliylpmiaeaalallacarigaihsvvfggfashslaariddatpklivs.......adagarggkvieykklldaaiaeaqh..kpahvllvdrglaklrrvpgrdvdyaalrrqhedadvevewlesnepsyilytsgttgkpkgvqrd 253
                 +++   ++ gd v+iy  +  + +l+ +a      +   v+  +  + la  + +++ kli++         a ar  k          ai++ ++  +p+   +v+  l +l++         +l +   +a ++ +  +++++++++ytsgttg pkgv   
  MMETSP1137-20121227|6776_1 170 MVKFARLKPGDHVVIYAETQLDWMLSCIAAFSQSLVVVTVYATLGEEGLAHGVKQTKAKLIIAdskllpkVSAAARKHKESMGNCNHVIAISDPVQtpDPKNESVVSAALRELTESG---WKSQTLDEAIANAGIPPNPPKAEDTAVVMYTSGTTGLPKGVIIT 330
                 566667889*******999999999999999999999999999999*********99999986222222223455555533333323334554444124677788888888877655...45678889999999**************************9755 PP

>> TIGR01217  ac_ac_CoA_syn: acetoacetate-CoA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   0.1   0.00023     0.078     113     284 ..     152     329 ..     130     339 .. 0.63
   2 ?   -2.0   0.0      0.45   1.5e+02     500     559 ..     564     625 ..     518     648 .. 0.74

  Alignments for each domain:
  == domain 1    score: 8.9 bits;  conditional E-value: 0.00023
   TIGR01217 113 akvtfeelrrqvaslaaalral.GvkkGdrvagylpnipeavaallatasvGaiwsscspdfGargvldrfsqiepkllfsvdgyvynGkehdrrekvrevakelpdlravvli..pyvgdreklapkvegaltledllaa.....aqaaelvfeqlpfdhp.....lyilfssGttGvpkaivh 284
                 + +t+ e r  +  l   + +   +k+Gd v+ y     + +   +a+ s   +  ++   +G++g+    +q + kl+++   +  +     ++   r+ + ++++ ++v+ i  p   +  k +  v +a  l +l+ +     + +  +    +p + p       ++++sGttG+pk ++ 
  MMETSP1137-20121227|6776_1 152 TWMTYGEYRTALHALGGGMVKFaRLKPGDHVVIYAETQLDWMLSCIAAFSQSLVVVTVYATLGEEGLAHGVKQTKAKLIIADSKLLPK-----VSAAARKHKESMGNCNHVIAIsdPVQTPDPKNESVVSAA--LRELTESgwksqTLDEAIANAGIPPNPPkaedtAVVMYTSGTTGLPKGVII 329
                 4578889998888888877665158999999999999999999999999999999999999999999999999999998875444322.....222233334455555555555223333333333333322..33344332222222333333344444332222268************8764 PP

  == domain 2    score: -2.0 bits;  conditional E-value: 0.45
   TIGR01217 500 vwah.GdyieltprGgivihGrs.datlnpnGvrlGsaeiynaverldeveeslvigqeqed 559
                  w h Gd  ++tp G + i  r  d    ++G  +  +++ na+++ + ve  ++ ++  e 
  MMETSP1137-20121227|6776_1 564 RWFHtGDIGQFTPDGNLQIIDRKkDLVKLQQGEYVALSKVENALKACPLVEMPMCYARSSES 625
                 387769999******99888776155666889999999999999999999998888777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (715 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       100  (0.0243784); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                        21  (0.00511945); expected 4.1 (0.001)
Passed Fwd filter:                        12  (0.0029254); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.79u 0.17s 00:00:00.96 Elapsed: 00:00:00.56
# Mc/sec: 1655.65
//
Query:       MMETSP1137-20121227|6777_1  [L=107]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.042   11.5   1.6      0.075   10.7   1.1    1.4  1  TIGR03949 bact_IIb_cerein: class IIb bacteriocin, lactobin A/cerein 7B family


Domain annotation for each model (and alignments):
>> TIGR03949  bact_IIb_cerein: class IIb bacteriocin, lactobin A/cerein 7B family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   1.1   1.8e-05     0.075       8      41 ..      11      42 ..       7      48 .. 0.77

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 1.8e-05
   TIGR03949  8 ELenVnGGvapigvAi.cvgggaaaaagagftaGa 41
                ++ ++ GG+ap++ A      +  a+a+a++++G+
  MMETSP1137-20121227|6777_1 11 DISSILGGIAPAAPAAqT---ATPAPAAAPAAGGF 42
                567999*****8777774...77777777777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (107 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        84  (0.0204778); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.22
# Mc/sec: 641.95
//
Query:       MMETSP1137-20121227|6778_1  [L=408]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.4e-21   72.5   0.5      2e-10   38.1   0.1    2.1  2  TIGR01622 SF-CC1: splicing factor, CC1-like family
    9.1e-18   62.5   0.0    1.2e-17   62.2   0.0    1.1  1  TIGR01628 PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family
    1.2e-12   46.0   0.1    6.2e-08   30.4   0.0    2.2  2  TIGR01661 ELAV_HUD_SF: ELAV/HuD family splicing factor
    6.9e-11   39.1   0.0      8e-05   19.1   0.0    2.1  2  TIGR01642 U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor
    6.6e-09   32.9   1.2    0.00049   16.8   0.5    2.4  2  TIGR01648 hnRNP-R-Q: hnRNP-R, Q splicing factor family
    2.8e-08   31.6   0.0    5.9e-06   24.0   0.0    2.3  1  TIGR01659 sex-lethal: sex-lethal family splicing factor
    1.1e-06   25.6   0.1     0.0023   14.5   0.0    2.2  2  TIGR01645 half-pint: poly-U binding splicing factor, half-pint family


Domain annotation for each model (and alignments):
>> TIGR01622  SF-CC1: splicing factor, CC1-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.8   0.0   1.4e-11   8.3e-09     207     278 ..      54     127 ..      42     139 .. 0.80
   2 !   38.1   0.1   3.4e-13     2e-10     196     297 ..     155     256 ..     142     304 .. 0.71

  Alignments for each domain:
  == domain 1    score: 32.8 bits;  conditional E-value: 1.4e-11
   TIGR01622 207 telsgdipnsiadlkLYvGnlhfni.tEqeLrqiFepFGeielvqlqkDpet.GrskGyGFiqFsdaeeakeAl 278
                  ++  +i +s  + kL+vG+l  ++ +++ Lr  Fe FGei +  +++   + G  kGyGFi+ +d e ak+ +
  MMETSP1137-20121227|6778_1  54 GRQADEIASSRQPIKLFVGSLPTSVrSNEVLRAHFEQFGEIADAIVRMKTLGkGEQKGYGFITVHDDEVAKRIM 127
                 3444477888999*********88736778***********98777666543389**************99754 PP

  == domain 2    score: 38.1 bits;  conditional E-value: 3.4e-13
   TIGR01622 196 eAEKNraak.aatelsgdipnsiadlkLYvGnlhfnitEqeLrqiFepFGeielvqlqkDpetGrskGyGFiqFsdaeeakeAleklNGlelAGReikvglas 297
                 + EK    +  +t  sg  ++  + lk +vG+l  ++tE+  +q F  FGe+ +  ++ D  t r +G+GF+++++     + l +    el G  + v  a 
  MMETSP1137-20121227|6778_1 155 NLEKGVRRSlSSTGDSGCAKSNGTCLKAFVGGLSQEVTEEIFKQFFGQFGELSDTVIMYDYATRRPRGFGFVTYTERASLDK-LLTCRFYELNGCRVEVKEAV 256
                 45565333303555566777677889************************************************98665444.34445566666666665544 PP

>> TIGR01628  PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.2   0.0     2e-20   1.2e-17     176     427 ..      64     332 ..      51     371 .. 0.70

  Alignments for each domain:
  == domain 1    score: 62.2 bits;  conditional E-value: 2e-20
   TIGR01628 176 kkftNlYvKnlddsvt.edklrelFakfGeitSaivkkd..eknrkrgfafvnyekaedAkkAveelngkkitlaatgkilyVgraq.kraeReaelkakfeelkqerkekaqgvNl..YvkNlddtvddekLrelFeefGeitSakvmld.ekekSkgFGFVcfssqeeAnkAvtelhgkilngkPLyvalAqrkeq.RkarLqqqfmqasaesrql.......sigspvigaanisgrhqaaqqqavvtqavkqqlasqplnfk.....i 427
                 ++   l+v  l+ sv  ++ lr  F +fGei  aiv++    k++++g++f+  ++ e Ak+ + + +  + t +  ++     ++q + ++ e+  ++  + +      k++g+ l  +v  l ++v++e  ++ F +fGe+  + +m d ++++ +gFGFV++++     k + +     lng  + v  A  +e+ Rk+ L +q  q + e r++       s++    g a+ +++ ++a+ + ++  +++ ++ + p  +       
  MMETSP1137-20121227|6778_1  64 RQPIKLFVGSLPTSVRsNEVLRAHFEQFGEIADAIVRMKtlGKGEQKGYGFITVHDDEVAKRIMAQEHVIDGTTVPAPTLAKSNQQQsSASNLEKGVRRSLSSTGDSGCAKSNGTCLkaFVGGLSQEVTEEIFKQFFGQFGELSDTVIMYDyATRRPRGFGFVTYTERASLDKLL-TCRFYELNGCRVEVKEAVPREHmRKEGLAAQAAQ-NKEFRKSgaafdeaSQAYGYEGYAEQAAS-PSANYRSMYPSNGSVKAPGSPPSYVpvadgA 332
                 5556799999*****626889***************8862268889****************9976554444422233333333333134455677788888888888889998877669*******************************999***********9987666655.5566667777788888876664388999999988.44555555556433333334444433333.4445555555566666666665555454442 PP

>> TIGR01661  ELAV_HUD_SF: ELAV/HuD family splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   0.0   1.3e-05    0.0077     268     326 ..      65     126 ..       9     148 .. 0.54
   2 !   30.4   0.0   1.1e-10   6.2e-08     244     319 ..     152     230 ..     129     253 .. 0.73

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 1.3e-05
   TIGR01661 268 agycifvynlspd..tdeavlqlfgpfGavqsvki.irdlttnkckGygfvsmtnydeaala 326
                     +fv  l +   ++e +   f +fG + +  + ++ l   + kGygf+++ + + a   
  MMETSP1137-20121227|6778_1  65 QPIKLFVGSLPTSvrSNEVLRAHFEQFGEIADAIVrMKTLGKGEQKGYGFITVHDDEVAKRI 126
                 45666666664331133333356666666655433245555566666666666654444433 PP

  == domain 2    score: 30.4 bits;  conditional E-value: 1.1e-10
   TIGR01661 244 asplaadgavaglaagaqiaasdgagyci..fvynlspdtdeavl.qlfgpfGavqsvkiirdlttnkckGygfvsmtn 319
                  +    +g+  +l +  +   +++ g c+  fv  ls +  e ++ q+fg+fG + +  i+ d+ t++ +G+gfv+ t+
  MMETSP1137-20121227|6778_1 152 SASNLEKGVRRSLSSTGDSGCAKSNGTCLkaFVGGLSQEVTEEIFkQFFGQFGELSDTVIMYDYATRRPRGFGFVTYTE 230
                 3333344455556554443334555666555********8887777******************************886 PP

>> TIGR01642  U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.0   3.5e-07    0.0002     290     352 ..      60     124 ..      39     138 .. 0.82
   2 !   19.1   0.0   1.4e-07     8e-05     273     350 ..     149     233 ..     133     255 .. 0.73

  Alignments for each domain:
  == domain 1    score: 17.8 bits;  conditional E-value: 3.5e-07
   TIGR01642 290 ktvldsedklyignLPldlkddqv.keLLesFGdLk.aFnliKdlatGlsKGyaFceykdssvtd 352
                  +++ ++ kl++g LP  ++ + v +   e+FG++  a   +K l  G  KGy+F+  +d  v++
  MMETSP1137-20121227|6778_1  60 IASSRQPIKLFVGSLPTSVRSNEVlRAHFEQFGEIAdAIVRMKTLGKGEQKGYGFITVHDDEVAK 124
                 56778889***********876653899******96367779***************99999886 PP

  == domain 2    score: 19.1 bits;  conditional E-value: 1.4e-07
   TIGR01642 273 qknsdinlk.avekl......vnsktvldsedklyignLPldlkddqvkeLLesFGdLkaFnliKdlatGlsKGyaFceykdssv 350
                 q+ s  nl+ +v ++      ++   +     k ++g+L ++++++  k+   +FG+L    ++ d at   +G++F+ y +   
  MMETSP1137-20121227|6778_1 149 QQSSASNLEkGVRRSlsstgdSGCAKSNGTCLKAFVGGLSQEVTEEIFKQFFGQFGELSDTVIMYDYATRRPRGFGFVTYTERAS 233
                 3333344431333334444444444555556699**********************************************98765 PP

>> TIGR01648  hnRNP-R-Q: hnRNP-R, Q splicing factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.0   5.5e-06    0.0032      59     116 ..      67     127 ..      58     134 .. 0.84
   2 !   16.8   0.5   8.4e-07   0.00049     237     367 ..     183     312 ..     177     353 .. 0.78

  Alignments for each domain:
  == domain 1    score: 14.1 bits;  conditional E-value: 5.5e-06
   TIGR01648  59 cevfvGkiPrdlyedelv.PlfekvGkiyelrlmmd..ldGknrGyafvtfcnkeeakeav 116
                   +fvG +P  +  +e++   fe+ G+i +  + m    +G+ +Gy f+t  + e ak+ +
  MMETSP1137-20121227|6778_1  67 IKLFVGSLPTSVRSNEVLrAHFEQFGEIADAIVRMKtlGKGEQKGYGFITVHDDEVAKRIM 127
                 679**********99977257*********877777535899***********99999876 PP

  == domain 2    score: 16.8 bits;  conditional E-value: 8.4e-07
   TIGR01648 237 yvrnlmletteeiieksfsefkpGavervkkirdya........fvhfedredavkamdelnGkeleGseievtlakPvdkesyvrytkaakgrgkeaqaaaqslsqvydpasrslayedyyynaliapsldypakkgs 367
                 +v  l  e+teei ++ f++f  G +     + dya        fv +++r   ++ +      el+G  +ev  a P +     r  k     +  ++ + ++ +  +d as++ +ye+y  +a+ +ps +y  + +s
  MMETSP1137-20121227|6778_1 183 FVGGLSQEVTEEIFKQFFGQF--GELSDTVIMYDYAtrrprgfgFVTYTERAS-LDKLLTCRFYELNGCRVEVKEAVPREHM---R--KEGLAAQAAQNKEFRKSGAAFDEASQAYGYEGYAEQAA-SPSANYRSMYPS 312
                 8889999**************..999888888888766666666999999965.5666678899************998776...3..33333333444445568999************987766.9**999988765 PP

>> TIGR01659  sex-lethal: sex-lethal family splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.0   0.0     1e-08   5.9e-06      62     246 ..      20     232 ..      10     240 .. 0.62

  Alignments for each domain:
  == domain 1    score: 24.0 bits;  conditional E-value: 1e-08
   TIGR01659  62 ndfsgaggssaatlgsvgnlanaastnslnslgsggs.ddndtrasgtnlivnylpqdmtdre.lyalfrtigpintcri.mrdyktgysfgyafvdfaseadsqrai...kslngitv.......rn..........krlkvsyarpgge...sikdtnl..yvtnlprtitddqldtifgkygsivqknilrdkltgkprgvafvrfnkre 246
                 +d ++ ++ss++t  ++++ a  a +   +++ +g + d+  ++ +   l v  lp  ++  e l a f   g i    + m+    g   gy+f+    +  ++r +   ++++g tv        n          k ++ s +  g     + + t l  +v  l++ +t++ ++  fg++g++ +  i+ d  t +prg  fv +  r 
  MMETSP1137-20121227|6778_1  20 QDVAQHESSSNTTSEGIAESAIPADSAPADAADTGRQaDEIASSRQPIKLFVGSLPTSVRSNEvLRAHFEQFGEIADAIVrMKTLGKGEQKGYGFITVHDDEVAKRIMaqeHVIDGTTVpaptlakSNqqqssasnleKGVRRSLSSTGDSgcaKSNGTCLkaFVGGLSQEVTEEIFKQFFGQFGELSDTVIMYDYATRRPRGFGFVTYTERA 232
                 566666666666655555555444444444444443313345555667788888888887776356778888888654433777777888888888887777777766222357777773333222111111111111233333333333300033344444489********************************************9986 PP

>> TIGR01645  half-pint: poly-U binding splicing factor, half-pint family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.1   0.0   0.00017       0.1     205     254 ..      71     122 ..      38     136 .. 0.71
   2 !   14.5   0.0     4e-06    0.0023     205     276 ..     184     254 ..     173     318 .. 0.85

  Alignments for each domain:
  == domain 1    score: 9.1 bits;  conditional E-value: 0.00017
   TIGR01645 205 vasvhpdl.seedlksvfeafGeivkcklaraptl.rkhkGfGflefenlqs 254
                 v s+   + s+e l++ fe fGei +  +  ++ + ++ kG+Gf+  ++ + 
  MMETSP1137-20121227|6778_1  71 VGSLPTSVrSNEVLRAHFEQFGEIADAIVRMKTLGkGEQKGYGFITVHDDEV 122
                 55655544278899***********766555544414689*****8766555 PP

  == domain 2    score: 14.5 bits;  conditional E-value: 4e-06
   TIGR01645 205 vasvhpdlseedlksvfeafGeivkcklaraptlrkhkGfGflefenlqsqseaiasmnlfdlGGqllrvGk 276
                 v  + ++++ee  k  f  fGe+ +  +  + ++r+ +GfGf+ + ++ s ++ + +  +++l G  + v  
  MMETSP1137-20121227|6778_1 184 VGGLSQEVTEEIFKQFFGQFGELSDTVIMYDYATRRPRGFGFVTYTERASLDKLL-TCRFYELNGCRVEVKE 254
                 7778889999999999999999999999999999999999999999888877655.4567777777565555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (408 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       109  (0.0265724); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.45u 0.17s 00:00:00.62 Elapsed: 00:00:00.49
# Mc/sec: 1099.01
//
Query:       MMETSP1137-20121227|6779_1  [L=797]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.7e-73  245.6   0.1    6.4e-63  210.8   0.0    2.2  2  TIGR02435 CobG: precorrin-3B synthase
    2.4e-41  139.3   0.1    4.4e-28   95.5   0.0    3.2  3  TIGR02042 sir: sulfite reductase, ferredoxin dependent
    2.1e-38  129.9   0.0    3.6e-33  112.7   0.0    2.3  2  TIGR02041 CysI: sulfite reductase (NADPH) hemoprotein, beta-component
    6.1e-31  105.4   0.2    1.2e-14   51.8   0.0    3.5  3  TIGR02912 sulfite_red_C: sulfite reductase, subunit C
    7.7e-22   75.6   0.1    1.5e-12   45.0   0.0    4.1  4  TIGR02066 dsrB: sulfite reductase, dissimilatory-type beta subunit
    1.1e-15   54.9   0.0    4.9e-07   26.3   0.0    3.2  3  TIGR02374 nitri_red_nirB: nitrite reductase [NAD(P)H], large subunit
    8.8e-13   45.7   0.0    3.2e-07   27.4   0.0    3.5  4  TIGR02064 dsrA: sulfite reductase, dissimilatory-type alpha subunit


Domain annotation for each model (and alignments):
>> TIGR02435  CobG: precorrin-3B synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  210.8   0.0   1.1e-65   6.4e-63      16     385 ..     139     548 ..     127     550 .. 0.89
   2 !   32.4   0.0   1.7e-11     1e-08     336     385 ..     656     709 ..     653     711 .. 0.95

  Alignments for each domain:
  == domain 1    score: 210.8 bits;  conditional E-value: 1.1e-65
   TIGR02435  16 dgllvRvrlvggiLtsaqvigLAelAerlg..ngiievtaRanlQlRgla.adadalseallaagllaagaaadevrnvevsplaGidpgeiadtralaeelraalenek........alleLgpkfsvalDgGgrltllevtaDvrlk..alkegdgvalalslaGastsarll........vavapdaavevlvavlrvfvekgr.....aarlrdlldeelvdealeeve.......lkllpeaaegeakreavaaaaplGlhpqadag.vtlGvglalGrltaaqlaelaelaqalGdgelrLtpwralLvlgvpeeraaaaqa...alaalGlvisasdprariaACtGapgCasaladtkadAealaaeleetvd....ltvHlsGCaksCAapgpaaltLvaae 385
                  + ++R+r ++gi++s+ +   A+l e +g  +g++++t+R n+QlRg+  +dad++++al a +    ++a d+vrn+++splaGidp+e++dtr + ++l+  +   +        +  +L++kf++a+ g  +     + +D+ l+  a  e +++ + + ++G    +r++          +  ++a ++  a+lr+f ++g      +arl  l +e +vd ++ +v+       + +++++a+   ++e+ ++++ lG+h+q+++g   +G+ +++Grlt+   ++la la a+ +ge+rLt+ +++++++v +++ +a+ a   ++ +  l + +s+ + + + CtGa+ C  a+++tka A+++a+ l+e+v+    l vH +GC +sC++ ++a+++L++a 
  MMETSP1137-20121227|6779_1 139 GSFMMRLRTPNGIVNSKLMRLYADLVEPYGpeQGVVDITTRQNIQLRGIRlEDADKVIDALHANNQTSFQSALDNVRNLVGSPLAGIDPHEMVDTRDICNHLNDLISLDRetglrgnpVWGNLPRKFNIAVSGSRDDFAHTNINDIGLEpcAHAETNEMGFNVVIGGYMSIKRVAasvpinlwIPADVNHAYTLSEAILRIFRDEGSrgdrqKARLMWLVEEMGVDTFRSKVVeemdsyaRDVRTDVAQP-HPTEPFERRELLGVHAQKQEGlSRVGIHVPTGRLTPLLCRQLADLADAYSAGEIRLTVEQNVMLPNVDNDKLEALLAepaLAPSSPLQVFPSNIAGNTVSCTGAQFCGLAMIETKANADRIARMLDERVEvpkkLRVHWTGCPNSCGQVQAADIGLMGAP 548
                 688**************************9888********************************************************************998875443111111116679*********999888889999*****9334455569***********999999665665444445678899999*********999999999*****************9999999988888888776.9********************99********************************************9999888764222666789*******************************************9999999*********************986 PP

  == domain 2    score: 32.4 bits;  conditional E-value: 1.7e-11
   TIGR02435 336 CasaladtkadAealaaeleetvd....ltvHlsGCaksCAapgpaaltLvaae 385
                 C  a+++tka A+++a+ l+e+v+    l vH +GC +sC++ ++a+++L++a 
  MMETSP1137-20121227|6779_1 656 CGLAMIETKANADRIARMLDERVEvpkkLRVHWTGCPNSCGQVQAADIGLMGAP 709
                 999********************9999999*********************986 PP

>> TIGR02042  sir: sulfite reductase, ferredoxin dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.6   0.0   2.7e-10   1.6e-07      69     172 ..     140     245 ..     132     258 .. 0.83
   2 !   95.5   0.0   7.6e-31   4.4e-28     222     511 ..     260     548 ..     249     557 .. 0.81
   3 !   12.3   0.0   1.2e-05    0.0071     454     511 ..     656     709 ..     652     718 .. 0.84

  Alignments for each domain:
  == domain 1    score: 27.6 bits;  conditional E-value: 2.7e-10
   TIGR02042  69 sfmlrtknpggkvpnqlyltlddladeyg..igtlrlttrqafqlhgvlkknlktvistivknlgstlgacgdlnrnvlapaapfkkkaeyefaketadniadlls 172
                 sfm+r+++p+g v ++l     dl + yg  +g + +ttrq +ql g+  ++   vi ++  n  +++ +  d  rn++  +    +  e   +++  + + dl+s
  MMETSP1137-20121227|6779_1 140 SFMMRLRTPNGIVNSKLMRLYADLVEPYGpeQGVVDITTRQNIQLRGIRLEDADKVIDALHANNQTSFQSALDNVRNLVGSPLAGIDPHEMVDTRDICNHLNDLIS 245
                 8***************************9556899***********************999888777777777778877655544555577778888888888776 PP

  == domain 2    score: 95.5 bits;  conditional E-value: 7.6e-31
   TIGR02042 222 ylprkfkvavtvptdnsvdlftqdiglvvvsdekgelegfniyvggglgrthrkeetfarladplgyvpkedilaavkaivvtqrdygdrddrryarlkylisdwgiekfrevv.eey..fgkkiapvrelp....efkykdylgwheqg.dgklflglsvdsgrvkdegafqlkkalrevvekykl.dvrltpnqniilydikpedkraittvlaqagll..qpeavdp..lnrtamacpalplcglaiteaeraipgilkrvrallekvglkdesvvvrltgcpngcarpymaelglvgda 511
                  lprkf +av+   d+      +digl   ++ + +  gfn+ +gg +       +    l  p      +  ++  +ai+   rd+g r dr+ arl +l+++ g++ fr++v ee+  + ++++     p    +f+ ++ lg h q  +g   +g++v +gr+       l + l ++ + y   ++rlt +qn++l ++ +++   ++++la+ +l   +p +v p  +   +++c     cgla+ e++       +r+ ++l++     +++ v  tgcpn c +   a++gl+g  
  MMETSP1137-20121227|6779_1 260 NLPRKFNIAVSGSRDDFAHTNINDIGLEPCAHAETNEMGFNVVIGGYMSIKRVAASVPINLWIPAD---VNHAYTLSEAILRIFRDEGSRGDRQKARLMWLVEEMGVDTFRSKVvEEMdsYARDVRTDVAQPhptePFERRELLGVHAQKqEGLSRVGIHVPTGRLTP----LLCRQLADLADAYSAgEIRLTVEQNVMLPNVDNDK---LEALLAEPALApsSPLQVFPsnIAGNTVSCTGAQFCGLAMIETKAN----ADRIARMLDERVEVPKKLRVHWTGCPNSCGQVQAADIGLMGAP 548
                 39*********************************************9876655555444544432...234567789*********************************876254333777665433333223379*********886268889***********9....89999********8758**************8876...5667777666411444444411566789**************9865....478999998887778999**********************964 PP

  == domain 3    score: 12.3 bits;  conditional E-value: 1.2e-05
   TIGR02042 454 cglaiteaeraipgilkrvrallekvglkdesvvvrltgcpngcarpymaelglvgda 511
                 cgla+ e++       +r+ ++l++     +++ v  tgcpn c +   a++gl+g  
  MMETSP1137-20121227|6779_1 656 CGLAMIETKAN----ADRIARMLDERVEVPKKLRVHWTGCPNSCGQVQAADIGLMGAP 709
                 88888887654....468999998887778999**********************964 PP

>> TIGR02041  CysI: sulfite reductase (NADPH) hemoprotein, beta-component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  112.7   0.0   6.1e-36   3.6e-33      61     480 ..     140     548 ..     118     558 .. 0.79
   2 !   14.6   0.0   3.2e-06    0.0019     423     480 ..     656     709 ..     653     720 .. 0.82

  Alignments for each domain:
  == domain 1    score: 112.7 bits;  conditional E-value: 6.1e-36
   TIGR02041  61 alllrvrlpGGvitpkqwlkldklarkyan..gslrlttrqtfqfhGilkkelkkvikalhsvlldslaaagdvnrnvlctsnpleselhrevyewakkisehllprtrayaeiwldekkvagaeeeepilGktylprkfkiavavpplndvdvyandlgfvaiae.deklvGfnvliGGglslehGdkktyprlakvlGfveleellavaeavvttqrdfGnrtdrknarlkytierlGldalkaeverragiklepvr.....py..k.fterGdrig.wvkgidgrwhltlfiesGrivdeedkklltGlreiak.ihkGdfritanqnliiaevsekekaki...eklakkyGlidgkvtalrknslacvalptcplamaeaerylpdfiakldkilekyGladeeivlrvtGcpnGcarallaeiglvGka 480
                 ++++r r+p G++++k      +l + y+   g + +ttrq  q+ Gi  ++  kvi alh+    s+ +a d  rn++    pl     +e   +++ i +hl         i ld +    ++   p++G+  lprkf iav+    +      nd+g+   a+ + + +Gfnv+iGG +s+++   +    +   +   +++++++++ea++ + rd G r dr++arl + +e++G+d+++++v + ++   ++vr     p+  + f+ r + +g   + ++g  ++ +++++Gr++    ++    l ++a     G++r+t +qn+++ +v +++ + +    +la ++ l+    ++++ n+++c     c+lam e++       +++ ++l +     +++ +  tGcpn c++   a+igl+G  
  MMETSP1137-20121227|6779_1 140 SFMMRLRTPNGIVNSKLMRLYADLVEPYGPeqGVVDITTRQNIQLRGIRLEDADKVIDALHANNQTSFQSALDNVRNLVG--SPLAGIDPHE-MVDTRDICNHLND------LISLDRETGLRGN---PVWGN--LPRKFNIAVSGSRDDFAHTNINDIGLEPCAHaETNEMGFNVVIGGYMSIKRVAASVP--INLWI-PADVNHAYTLSEAILRIFRDEGSRGDRQKARLMWLVEEMGVDTFRSKVVEEMDSYARDVRtdvaqPHptEpFE-RRELLGvHAQKQEGLSRVGIHVPTGRLTPLLCRQ----LADLADaYSAGEIRLTVEQNVMLPNVDNDKLEALlaePALAPSSPLQV-FPSNIAGNTVSCTGAQFCGLAMIETKANA----DRIARMLDERVEVPKKLRVHWTGCPNSCGQVQAADIGLMGAP 548
                 6999**********999988889999998656899******************************************864..4666544444.456899****954......5889998766666...****7..9*******99888877888999*99988777456679**********9987655443..33333.367899***************************************9987777654444441111143113233.334444156677788899*********9765555....5566651578*************9998876554422224666666665.7899********************98654....5666666677677899999********************965 PP

  == domain 2    score: 14.6 bits;  conditional E-value: 3.2e-06
   TIGR02041 423 cplamaeaerylpdfiakldkilekyGladeeivlrvtGcpnGcarallaeiglvGka 480
                 c+lam e++       +++ ++l +     +++ +  tGcpn c++   a+igl+G  
  MMETSP1137-20121227|6779_1 656 CGLAMIETKANA----DRIARMLDERVEVPKKLRVHWTGCPNSCGQVQAADIGLMGAP 709
                 999999987654....5666666666667899999********************965 PP

>> TIGR02912  sulfite_red_C: sulfite reductase, subunit C
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.8   0.0   2.7e-11   1.6e-08      13      79 ..     133     201 ..     121     296 .. 0.78
   2 !   51.8   0.0   2.1e-17   1.2e-14      15     168 ..     405     554 ..     400     570 .. 0.87
   3 !   17.5   0.0   5.9e-07   0.00035     110     168 ..     654     715 ..     636     731 .. 0.79

  Alignments for each domain:
  == domain 1    score: 31.8 bits;  conditional E-value: 2.7e-11
   TIGR02912  13 rvtkergktairvrvpggileakylsllrdiaetyg..ngkvhittrqgleipgikfedidevnkllqp 79 
                 r  ++ g  ++r+r p gi+++k++ l +d+ e yg  +g v ittrq++++ gi++ed d+v ++l+ 
  MMETSP1137-20121227|6779_1 133 RRKRSPGSFMMRLRTPNGIVNSKLMRLYADLVEPYGpeQGVVDITTRQNIQLRGIRLEDADKVIDALHA 201
                 555667999**************************966699**********************999875 PP

  == domain 2    score: 51.8 bits;  conditional E-value: 2.1e-17
   TIGR02912  15 tkergktairvrvpggileakylsllrdiaetygngkvhittrqgleipgikfedidevnkllqpiiegleieqeevqkgysasgtrnvtacignrvcpfanydttklakriekav...fpsdyhlkialtgcpndcikarmadlgilgvtepryda 168
                  k+ g + + + vp g l   +   l+d+a+ y  g++ +t+ q++ +p+++ ++       l+ ++ +  +  +++ + + +  + n ++c g + c  a  +t   a ri +++      + +l++  tgcpn c +++ ad+g++g    + d 
  MMETSP1137-20121227|6779_1 405 QKQEGLSRVGIHVPTGRLTPLLCRQLADLADAYSAGEIRLTVEQNVMLPNVDNDK-------LEALLAEPALAPSSPLQVFPSNIAGNTVSCTGAQFCGLAMIETKANADRIARMLderVEVPKKLRVHWTGCPNSCGQVQAADIGLMGAPAKKMDP 554
                 6889999999****************************************98555.......5666777777889999999999999*******************99999988873323457889999********************98777664 PP

  == domain 3    score: 17.5 bits;  conditional E-value: 5.9e-07
   TIGR02912 110 rvcpfanydttklakriekav...fpsdyhlkialtgcpndcikarmadlgilgvtepryda 168
                 + c  a  +t   a ri +++      + +l++  tgcpn c +++ ad+g++g    + d 
  MMETSP1137-20121227|6779_1 654 EFCGLAMIETKANADRIARMLderVEVPKKLRVHWTGCPNSCGQVQAADIGLMGAPAKKMDP 715
                 5677788888777777776652223456789999********************98777664 PP

>> TIGR02066  dsrB: sulfite reductase, dissimilatory-type beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.1   0.0    0.0036       2.1      31      88 ..     141     201 ..     129     242 .. 0.87
   2 !    4.7   0.0    0.0048       2.8     232     315 ..     292     374 ..     262     387 .. 0.82
   3 !   45.0   0.0   2.6e-15   1.5e-12      45     170 ..     426     549 ..     405     572 .. 0.85
   4 !   15.4   0.0   2.6e-06    0.0015     125     170 ..     664     710 ..     646     733 .. 0.80

  Alignments for each domain:
  == domain 1    score: 5.1 bits;  conditional E-value: 0.0036
   TIGR02066  31 ytvkagtpr.lvsvdtlrklcdiadkya..dGylritirnnveflvsdeskvqklidelek 88 
                 + +++ tp+ +v+ + +r  +d+ + y+  +G + it+r+n++      + ++k+id+l+ 
  MMETSP1137-20121227|6779_1 141 FMMRLRTPNgIVNSKLMRLYADLVEPYGpeQGVVDITTRQNIQLRGIRLEDADKVIDALHA 201
                 67788888889999999**********8668************999999999999999976 PP

  == domain 2    score: 4.7 bits;  conditional E-value: 0.0048
   TIGR02066 232 adaeddglailvGGklsnarvkPelskvvvpyiPnePPrypevvavvkkileayke.dakkyerlaewveriGWekffelvglef 315
                 a++++ g  +++GG +s  rv  ++   +  +iP++     ++ +++ +i+    + + ++  rl+  ve +G + f  +v  e+
  MMETSP1137-20121227|6779_1 292 AETNEMGFNVVIGGYMSIKRVAASVP--INLWIPADVNHAYTLSEAILRIFRDEGSrGDRQKARLMWLVEEMGVDTFRSKVVEEM 374
                 56788999************987664..667******9999999999999866554155778899999******99988876554 PP

  == domain 3    score: 45.0 bits;  conditional E-value: 2.6e-15
   TIGR02066  45 tlrklcdiadkyadGylritirnnveflvsdeskvqklidelek.lgfpvGGtgdavagnivhtqgwlhcdipaidasgivkalmdelieyft.eeklPakvrislsccasmcgavtasdiaivgvhr 170
                   r+l+d+ad y+ G +r+t+ +nv     d++k++ l  e       p+    + +agn v ++g   c ++ i++    ka  d +   +    ++P k+r+  ++c+++cg v+a+di ++g   
  MMETSP1137-20121227|6779_1 426 LCRQLADLADAYSAGEIRLTVEQNVMLPNVDNDKLEALLAEPALaPSSPLQVFPSNIAGNTVSCTGAQFCGLAMIET----KANADRIARMLDeRVEVPKKLRVHWTGCPNSCGQVQAADIGLMGAPA 549
                 579**********************************9988766478899999**********************96....7777888777773568************************9887543 PP

  == domain 4    score: 15.4 bits;  conditional E-value: 2.6e-06
   TIGR02066 125 kalmdelieyft.eeklPakvrislsccasmcgavtasdiaivgvhr 170
                 ka  d +   +    ++P k+r+  ++c+++cg v+a+di ++g   
  MMETSP1137-20121227|6779_1 664 KANADRIARMLDeRVEVPKKLRVHWTGCPNSCGQVQAADIGLMGAPA 710
                 67777777777734689***********************9887543 PP

>> TIGR02374  nitri_red_nirB: nitrite reductase [NAD(P)H], large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.5   0.0   1.2e-08     7e-06     553     770 ..     134     379 ..     108     390 .. 0.72
   2 !   26.3   0.0   8.4e-10   4.9e-07     523     692 ..     374     546 ..     357     579 .. 0.84
   3 !    3.5   0.0     0.007       4.1     661     692 ..     676     707 ..     652     740 .. 0.85

  Alignments for each domain:
  == domain 1    score: 22.5 bits;  conditional E-value: 1.2e-08
   TIGR02374 553 niqkdgtysvvPrvyGGeinaedLrkiadiveeyel...yvkitggqrldlfGvkkddLPkiwkdLkeaglesghaygkalrtvktCvgsqfcry......Gqqdsvq.....Laielekryegl....rtPhkiklgvsgCereCaeaalkDvGv......iatekGWnlyvgGngGtkaraadL...laadkdketlikyidrflqyyietadkLertaa...W.lerlgldhvrevliedelglra 770
                   +  g++++  r++ G +n++ +r+ ad+ve y+     v it  q ++l G++ +d  k+   L+    +    ++ al  v+  vgs            ++d+ +     ++++ e  ++g     ++P k +++vsg   + a ++++D+G+       + e G+n+ +gG   +k  aa +   l    d ++   + ++ l  +++   + +r +a   W +e++g+d  r+ ++e+    ++
  MMETSP1137-20121227|6779_1 134 RKRSPGSFMMRLRTPNGIVNSKLMRLYADLVEPYGPeqgVVDITTRQNIQLRGIRLEDADKVIDALHANNQT---SFQSALDNVRNLVGSPLAGIdphemvDTRDICNhlndlISLDRETGLRGNpvwgNLPRKFNIAVSGSRDDFAHTNINDIGLepcahaETNEMGFNVVIGGYMSIKRVAASVpinLWIPADVNHAYTLSEAILRIFRDEGSRGDRQKArlmWlVEEMGVDTFRSKVVEEMDSYAR 379
                 55556788888899********************7654689*************************999885...899***********988754111111455554322221234445566664334468************************733322124578*********9999888876333455567777777778888888866555544432222536889999999888887665555 PP

  == domain 2    score: 26.3 bits;  conditional E-value: 8.4e-10
   TIGR02374 523 vaslLaslysekildeeatslqdsndrllaniqkdgtysvvP.rvyGGeinaedLrkiadiveeyel.yvkitggqrldlfGvkkddLPkiwkdLkeaglesghaygkalr.tvktCvgsqfcryGqqdsvqLaielekry.eglrtPhkiklgvsgCereCaeaalkDvGvia 692
                 ++s+   + ++  +++++ ++ +  + l    qk++  s v  +v+ G++++   r++ad++++y+   +++t  q + l  v +d+L  +  +   a     + +   +     +C+g qfc     ++ + a  + + + e +++P+k+++  +gC+  C + +  D+G+++
  MMETSP1137-20121227|6779_1 374 MDSYARDVRTDVAQPHPTEPF-ERRELLGVHAQKQEGLSRVGiHVPTGRLTPLLCRQLADLADAYSAgEIRLTVEQNVMLPNVDNDKLEALLAEPALAPSSPLQVFPSNIAgNTVSCTGAQFCGLAMIETKANADRIARMLdERVEVPKKLRVHWTGCPNSCGQVQAADIGLMG 546
                 566777777777888888888.67788888899999988775389*******************************************9987765555544556665555315669******************99999985679**************************986 PP

  == domain 3    score: 3.5 bits;  conditional E-value: 0.007
   TIGR02374 661 eglrtPhkiklgvsgCereCaeaalkDvGvia 692
                 e +++P+k+++  +gC+  C + +  D+G+++
  MMETSP1137-20121227|6779_1 676 ERVEVPKKLRVHWTGCPNSCGQVQAADIGLMG 707
                 46889************************986 PP

>> TIGR02064  dsrA: sulfite reductase, dissimilatory-type alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.0     0.018        10      83     181 ..     142     241 ..     135     287 .. 0.68
   2 ?   -1.9   0.0      0.41   2.4e+02     290     365 ..     294     369 ..     280     383 .. 0.71
   3 !   27.4   0.0   5.4e-10   3.2e-07      84     223 ..     413     548 ..     400     562 .. 0.80
   4 !   11.0   0.0   5.1e-05      0.03     166     223 ..     656     709 ..     651     723 .. 0.77

  Alignments for each domain:
  == domain 1    score: 2.6 bits;  conditional E-value: 0.018
   TIGR02064  83 tvrvaqpsGkfystkylrqlidvwekyG..sGlvelhGstGdivllgtstevleeifeelr.elgtdlGGsGsalrtaesCvGkalCefacydtlkaftelt 181
                  +r+  p G    +k++r  +d+ e yG   G+v++  +  +i l g + e +++++++l+ + +t    + +++r++            + dt +++ +l 
  MMETSP1137-20121227|6779_1 142 MMRLRTPNGI-VNSKLMRLYADLVEPYGpeQGVVDITTR-QNIQLRGIRLEDADKVIDALHaNNQTSFQSALDNVRNLVGSPLAGIDPHEMVDTRDICNHLN 241
                 6888888886.567899**********966699998755.69******************988999999999999987433222222233455555555554 PP

  == domain 2    score: -1.9 bits;  conditional E-value: 0.41
   TIGR02064 290 GdergvtiliGgkaklkeGaklGslvvpfkveaeeeydeivelvekiidfWdeeg....kereriGelikrlglakflev 365
                  +e g  ++iGg  ++k  a      vp+++ ++ ++++   l e+i+  + +eg    +++ r+  l++ +g+  f  +
  MMETSP1137-20121227|6779_1 294 TNEMGFNVVIGGYMSIKRVAA----SVPINLWIPADVNHAYTLSEAILRIFRDEGsrgdRQKARLMWLVEEMGVDTFRSK 369
                 567777888888887776543....5777788999999999999999999999982222345566666666666666555 PP

  == domain 3    score: 27.4 bits;  conditional E-value: 5.4e-10
   TIGR02064  84 vrvaqpsGkfystkylrqlidvwekyGsGlvelhGstGdivllgtstevleeifeelr...elgtdlGGsGsal.rtaesCvGkalCefacydtlkafteltkeyqdelhrPafPykfkikvsgCPndCvaaiarsdfaviGtW 223
                 v ++ p+G+  +  + rql+d+++ y +G + l  +  +++l  +++++le+++ e       ++ +    s++  ++ sC G   C +a+ +t++    + + +++ +++   P k+++  +gCPn C++ +  +d++++G+ 
  MMETSP1137-20121227|6779_1 413 VGIHVPTGRL-TPLLCRQLADLADAYSAGEIRLTVE-QNVMLPNVDNDKLEALLAEPAlapSSPLQVFP--SNIaGNTVSCTGAQFCGLAMIETKANADRIARMLDERVEV---PKKLRVHWTGCPNSCGQVQ-AADIGLMGAP 548
                 5566777774.44578****************9876.58999999*********986652555555555..455146679**************99999999988887776...57***************99.89*****974 PP

  == domain 4    score: 11.0 bits;  conditional E-value: 5.1e-05
   TIGR02064 166 CefacydtlkafteltkeyqdelhrPafPykfkikvsgCPndCvaaiarsdfaviGtW 223
                 C +a+ +t++    + + +++ ++    P k+++  +gCPn C++ +  +d++++G+ 
  MMETSP1137-20121227|6779_1 656 CGLAMIETKANADRIARMLDERVE---VPKKLRVHWTGCPNSCGQVQ-AADIGLMGAP 709
                 777777777776666666666555...567***************99.89*****974 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (797 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        91  (0.0221843); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.74u 0.16s 00:00:00.90 Elapsed: 00:00:00.75
# Mc/sec: 1402.60
//
Query:       MMETSP1137-20121227|6780_1  [L=648]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.041   10.2   0.0      0.071    9.5   0.0    1.3  1  TIGR01530 nadN: NAD nucleotidase


Domain annotation for each model (and alignments):
>> TIGR01530  nadN: NAD nucleotidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   0.0   1.7e-05     0.071      13     139 ..      43     171 ..      37     187 .. 0.69

  Alignments for each domain:
  == domain 1    score: 9.5 bits;  conditional E-value: 1.7e-05
   TIGR01530  13 lepeelelalagerlkvdvggyaalvaklqklrkksknalv..lhagdaligtlystlfrgradavlmnaanfdyftlgnhefdagneglkklleylkvpvlsanvvpdkasilynkwkpsdivevdge 139
                 + p e +l +        +  +a+l++ +   +k+   a v  + +gd l   l s++ +g+     + ++ +dy+t gnhe d     + + ++      l +n+  +++    + +   ++   dg 
  MMETSP1137-20121227|6780_1  43 MTPSEARLIVIQVTDVYTLQNFASLKTLIAEQKKQNPSATVvsMLTGDFLAPYLLSSVDKGTGMMNAIKKTPIDYLTWGNHEADIAHSDVCRHVRNYPGIWLNTNMQDHAEMEHQKAYDVIEVTSEDGS 171
                 5666677666665556677889999998888887777666622568*****************999999***************988887776665555556666543333333333333344444555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (648 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       102  (0.0248659); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.16s 00:00:00.60 Elapsed: 00:00:00.51
# Mc/sec: 1677.04
//
Query:       MMETSP1137-20121227|6781_1  [L=589]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.6e-16   56.0  23.5    5.3e-15   53.0  16.3    2.0  1  TIGR00890 2A0111: oxalate/formate antiporter
    6.6e-09   32.8  14.1      8e-05   19.3   5.9    2.1  2  TIGR00892 2A0113: monocarboxylate transporter
      1e-05   22.6  19.8    7.8e-05   19.7   3.4    2.2  2  TIGR00886 2A0108: nitrite transporter
    2.9e-05   21.0  30.2     0.0025   14.6   4.2    2.9  3  TIGR00893 2A0114: D-galactonate transporter


Domain annotation for each model (and alignments):
>> TIGR00890  2A0111: oxalate/formate antiporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.0  16.3   5.2e-18   5.3e-15      21     356 ..      94     496 ..      73     522 .. 0.80

  Alignments for each domain:
  == domain 1    score: 53.0 bits;  conditional E-value: 5.2e-18
   TIGR00890  21 twtllapalgrklrvkvtavaiaftlllivlalsqvvgGkladkfGpravallggillgiGfifaaladslallyltyg.lasvgegivYgialstavkWfpdkrGLasgiii.....ggyGlGslilsplitsvielegveaafivmgivalllivllallikypek................................................................qkvkksievsekdvtvaealrtaqfwvlyvsfllaavsgllligllkaygrslildvgalvlavsi.ssllngggRlvlGavsDkigrlktmsivlsisavlllslllik..kisdvlflAlvalvaftiGgtfslfpslvskifgkknsaanyGllytakavagilggliaslvlt 356
                 + t l  ++ ++l++++    +a+tl ++  a++q+  G+ +dkfG+r    + ++  ++     +l  s a l l ++ + ++g g + +      ++W+  +rGLasg+ +     +g+G+ s+ ls l +      g ++a+ ++g+v+l+  ++la +   +++                                                                  + +  +   +  t++ea rt  fw+l+ s +la   g  l  +l  ++ +l l +  l++   +    + +++ +v G + D++ +  ++s + +  av  + l  ++  ++   + +A  ++ ++ +G+  ++f     ++fg+++++a  G l+t    a  +g l+ +++  
  MMETSP1137-20121227|6781_1  94 AITFLVEPMMEELDLSRGMLSLAYTLGTLLGAVAQMPLGRAVDKFGGRVAISAFSACFALSLCALSLPRSWATLVLGFSaIRALGFGGLQLACATCLQQWYVRNRGLASGLSEalstfVGFGCYSALLSSLVS----AYGWRRAYALLGAVQLVTYTPLAAIAVRARPedigllpdggthtagrpvrlaaaterrgdgdgdgdgdgdgdddggeagvdgggdaatgvkkemaTGAATAGG-ATEGWTLSEACRTLAFWLLASSNALAWGAGAGLFFHLASITSELDLPAEKLAVYIYLpWASARALSLVVSGRLLDRVQPRLVLSAGAAAAAVAYAML-GAPhaNLHPLAAVAFAIIFGIGMGTCAAVFRVAPAHCFGRAHLGAIAGALQTTNVAATAIGPLLLGAIHD 496
                 3567889999**************************************9998889999********************99*******98887777789*************7522222588887777666655....56699***************9998877777778******************************************************9998665444444444.45699****************99998888888888888888888877766666555525678889999****************9999888766555.444014556667777788889999***************************9877666666655555541 PP

>> TIGR00892  2A0113: monocarboxylate transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   5.9   7.8e-08     8e-05      77     185 ..     134     243 ..      70     258 .. 0.79
   2 !   16.8   0.2   4.6e-07   0.00048     334     422 ..     436     523 ..     396     550 .. 0.77

  Alignments for each domain:
  == domain 1    score: 19.3 bits;  conditional E-value: 7.8e-08
   TIGR00892  77 lvnkfGsrpvvliGgllaslGlilasfsssvlelyltiGvitGlGlalnlqpaltilGkyferrrplanglaaaGsp.vflsslaplnqlllekfGWrGsflilGglllh 185
                  v+kfG r+ + + +   +l l + s+ +s   l l    i  lG+     ++ t l ++++r r la gl+ a s+ v++  ++ l   l+  +GWr ++ +lG++ l 
  MMETSP1137-20121227|6781_1 134 AVDKFGGRVAISAFSACFALSLCALSLPRSWATLVLGFSAIRALGFGGLQLACATCLQQWYVRNRGLASGLSEALSTfVGFGCYSALLSSLVSAYGWRRAYALLGAVQLV 243
                 499******99998888889999999*******************974434556899**************988665499**************************9875 PP

  == domain 2    score: 16.8 bits;  conditional E-value: 4.6e-07
   TIGR00892 334 talvvyavvfglsfgsvsallfevlmdlvgaqrfssavGlvtivealavllgPPlaGklvdalknykyvfylsgvivvlaalflliata 422
                  a v++a++fg+++g+ +a+   +     g +++ +  G +   +  a  +gP l+G + da+  y +   + +v ++l ++ l++a  
  MMETSP1137-20121227|6781_1 436 LAAVAFAIIFGIGMGTCAAVFRVAPAHCFGRAHLGAIAGALQTTNVAATAIGPLLLGAIHDATASYALATRAMAVSMLLFSV-LALALR 523
                 46799***********9998777778899*******9*****************************9876655554444433.233333 PP

>> TIGR00886  2A0108: nitrite transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   3.4   7.6e-08   7.8e-05      22     133 ..      97     207 ..      81     283 .. 0.71
   2 !    8.7   4.8   0.00017      0.17      28     184 ..     369     522 ..     341     577 .. 0.66

  Alignments for each domain:
  == domain 1    score: 19.7 bits;  conditional E-value: 7.6e-08
   TIGR00886  22 pLvvqiikedlgLskaqlallvavpvlatavlRiilgflvdkfGpRkttallllllaiPllllalavssfselll....lrlliGiaGasFvislamisefFpkkevGtAlglaaG 133
                  Lv  +  e+l+Ls   l l+  +++l++av+ ++lg +vdkfG+R  +++  ++ a  l +l l + s ++l+l    +r  +G++G + +++ +   +++  +  G+A gl+ +
  MMETSP1137-20121227|6781_1  97 FLVEPM-MEELDLSRGMLSLAYTLGTLLGAVAQMPLGRAVDKFGGRVAISAFSACFALSLCALSLPR-SWATLVLgfsaIR-ALGFGGLQLACA-TCLQQWYV-RNRGLASGLSEA 207
                 344444.49*************************************987666655555555555555.4444443111055.469988887765.66788885.668999999864 PP

  == domain 2    score: 8.7 bits;  conditional E-value: 0.00017
   TIGR00886  28 ikedlgLskaqlallvavpvlatavlR.iilgflvdkfGpRkttallllllaiPllllalavssfsellllrlli..GiaGasFvislamisefFpkkevGtAl.glaaGlGNlGggvaqlvmpaiieallkgagqpakkawrvalvlvpalillliallv 184
                 i ++l+L ++ la+   +p +++ +l  ++ g l+d+  pR +++++++++a++ ++l+    +++ l+++++ i  Gi+ ++ +   ++     p ++ G A  g  aG+     ++a+++ p +   ++++a  +  +a r+ +  v  l++ ++al++
  MMETSP1137-20121227|6781_1 369 ITSELDLPAEKLAVYIYLPWASARALSlVVSGRLLDRVQPRLVLSAGAAAAAVAYAMLGAPHANLHPLAAVAFAIifGIGMGTCAAVFRV----APAHCFGRAHlGAIAGALQTTNVAATAIGPLLLG-AIHDATASYALATRAMA--VSMLLFSVLALAL 522
                 558999999999999999999997776156699*********************999999988999999998887114443433333333....3666777663233333333344444455555555.55555555433433333..3333444444433 PP

>> TIGR00893  2A0114: D-galactonate transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.1     0.025        26     262     315 ..      45      95 ..      39     100 .. 0.69
   2 !   14.6   4.2   2.4e-06    0.0025      18     160 ..     100     243 ..      90     260 .. 0.83
   3 !   12.5   9.3   1.1e-05     0.011     241     393 ..     368     517 ..     327     524 .. 0.77

  Alignments for each domain:
  == domain 1    score: 1.4 bits;  conditional E-value: 0.025
   TIGR00893 262 ivgfvgmvlggilsdlllkkgkslvlarktaiiaglvlsllliatnlvaskiaa 315
                 +v  ++ +l  + sd++l+k+  ++ +r   ++    +++l  +++++ +++a+
  MMETSP1137-20121227|6781_1  45 AVHTISALLPLRASDWFLRKR-GILHSRYGYVVW--SVCCLGQIASYTGTSAAI 95 
                 6778999999**********7.666666666665..355555555566555444 PP

  == domain 2    score: 14.6 bits;  conditional E-value: 2.4e-06
   TIGR00893  18 vtlkedLglsaaqyglvfsafsigyvlfqlpggllldriGakktlavaivlWglftllqafat....alvslivlRvllGlaEaplfPgiikivasWFPakeratavsifns.aqalgaiiggplvgwilvefsWqlvFiieGvlaii 160
                   ++e+L ls  +++l  ++  +  ++ q+p g ++d++G ++ ++ +   ++l +++ +++      + ++ ++R+   l +++l  + +  +++W+ +  r+ a+++  +  +++g    ++l  +++ + +W+ ++ + G++ ++
  MMETSP1137-20121227|6781_1 100 EPMMEELDLSRGMLSLAYTLGTLLGAVAQMPLGRAVDKFGGRVAISAFSACFALSLCALSLPRswatLVLGFSAIRA---LGFGGLQLACATCLQQWYVR-NRGLASGLSEAlSTFVGFGCYSALLSSLVSAYGWRRAYALLGAVQLV 243
                 459********************************************999999999999999943323444445554...468999999999******75.689999998651567788999*****************999988665 PP

  == domain 3    score: 12.5 bits;  conditional E-value: 1.1e-05
   TIGR00893 241 ylkqerglslleagllaslpaivg.fvgmvlggilsdlllkkgkslvlarktaiiaglvlsllliatnlvaskiaalalvalaffgkgl.aailwavisdvlskeiagltgGlinllGnlagivgPivigaiaattGsfagallvvaalaligal 393
                  +++e+ l +++ ++   lp++ + ++++v  g+l d ++ +   lvl+  +a+ a++ ++l +  +n    ++aa+a++ + ++g g  aa+    ++  + ++  g+  G++++   +a  +gP+++gai ++t s a a+  +a+ +l+ + 
  MMETSP1137-20121227|6781_1 368 SITSELDLPAEKLAVYIYLPWASArALSLVVSGRLLDRVQPR---LVLSAGAAAAAVAYAMLGAPHAN--LHPLAAVAFAIIFGIGMGTcAAVFRVAPAHCFGRAHLGAIAGALQTTNVAATAIGPLLLGAIHDATASYALATRAMAVSMLLFSV 517
                 566777777777788788888765378999999999999999...99999999999666666665555..799****************555555667778999999999**************************9888887777765554333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (589 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       155  (0.0377864); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.46u 0.13s 00:00:00.59 Elapsed: 00:00:00.60
# Mc/sec: 1295.69
//
Query:       MMETSP1137-20121227|6782_1  [L=373]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (373 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        73  (0.0177962); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.17s 00:00:00.45 Elapsed: 00:00:00.38
# Mc/sec: 1295.58
//
Query:       MMETSP1137-20121227|6784_1  [L=372]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (372 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        96  (0.0234032); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.16s 00:00:00.47 Elapsed: 00:00:00.41
# Mc/sec: 1197.56
//
Query:       MMETSP1137-20121227|6785_1  [L=437]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (437 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       142  (0.0346173); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.14s 00:00:00.44 Elapsed: 00:00:00.46
# Mc/sec: 1253.90
//
Query:       MMETSP1137-20121227|6786_1  [L=415]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (415 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        81  (0.0197465); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.16s 00:00:00.44 Elapsed: 00:00:00.90
# Mc/sec: 608.62
//
Query:       MMETSP1137-20121227|6787_1  [L=35]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (35 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                         8  (0.00195027); expected 82.0 (0.02)
Passed bias filter:                        7  (0.00170648); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.19s 00:00:00.27 Elapsed: 00:00:00.31
# Mc/sec: 149.02
//
Query:       MMETSP1137-20121227|6788_1  [L=166]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.9e-09   35.3   0.1    4.1e-09   34.8   0.1    1.2  1  TIGR00082 rbfA: ribosome-binding factor A


Domain annotation for each model (and alignments):
>> TIGR00082  rbfA: ribosome-binding factor A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.8   0.1     1e-12   4.1e-09      25      95 ..      13      84 ..       7     103 .. 0.87

  Alignments for each domain:
  == domain 1    score: 34.8 bits;  conditional E-value: 1e-12
   TIGR00082 25 eikddrvglltVtkVevSkdllhakvfvsvlkdeeaiekvvkalkkAkgfirsllgkrlr.lrktpelsFvk 95
                 i d+ + ++++ +V vS dl +a+v vsv++d++ + +++  l++  g ir  l++r+r ++++p+lsF++
  MMETSP1137-20121227|6788_1 13 PISDNLMCMIQIINVDVSPDLGQARVKVSVIGDRKDKITAIRWLQRNTGSIRYALAQRVRqMKRVPRLSFLH 84
                57788889**************************************************9846789*****86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (166 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       133  (0.0324232); expected 82.0 (0.02)
Passed bias filter:                      107  (0.0260848); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.19u 0.12s 00:00:00.31 Elapsed: 00:00:00.31
# Mc/sec: 706.78
//
Query:       MMETSP1137-20121227|6789_1  [L=108]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (108 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       123  (0.0299854); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.12s 00:00:00.27 Elapsed: 00:00:00.36
# Mc/sec: 395.97
//
Query:       MMETSP1137-20121227|6790_1  [L=484]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (484 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       111  (0.02706); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.17s 00:00:00.52 Elapsed: 00:00:00.56
# Mc/sec: 1140.76
//
Query:       MMETSP1137-20121227|6791_1  [L=937]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00027   16.9   0.0      0.079    8.8   0.0    2.2  2  TIGR00870 trp: transient-receptor-potential calcium channel protein


Domain annotation for each model (and alignments):
>> TIGR00870  trp: transient-receptor-potential calcium channel protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.9   0.0   0.00014      0.59     191     222 ..     514     545 ..     511     555 .. 0.87
   2 !    8.8   0.0   1.9e-05     0.079     129     166 ..     680     718 ..     601     728 .. 0.86

  Alignments for each domain:
  == domain 1    score: 5.9 bits;  conditional E-value: 0.00014
   TIGR00870 191 esivsllsedpAdiltadslgntllhllvies 222
                 e++++ll+e++A+    ds gn l+hl ++  
  MMETSP1137-20121227|6791_1 514 EQMLRLLIEKGASTTVMDSAGNSLQHLHAVFG 545
                 6789***********************98765 PP

  == domain 2    score: 8.8 bits;  conditional E-value: 1.9e-05
   TIGR00870 129 tkgitalilAihkqnyeivklLlekgasve.arakgdef 166
                   g tal+lA  + +  + ++L+e ga+ +   akg+  
  MMETSP1137-20121227|6791_1 680 NLGATALHLASARGDAACMRVLVEHGADPQlRDAKGRTV 718
                 5699***********************988444777655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (937 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        66  (0.0160897); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.58u 0.14s 00:00:00.72 Elapsed: 00:00:00.45
# Mc/sec: 2748.31
//
Query:       MMETSP1137-20121227|6792_1  [L=422]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.7e-17   60.6   1.3    1.9e-09   34.8   0.0    3.1  3  TIGR02037 degP_htrA_DO: peptidase Do
    5.4e-11   39.8   0.0    0.00012   18.9   0.0    3.0  3  TIGR00054 TIGR00054: RIP metalloprotease RseP
    1.9e-08   31.7   0.1    1.4e-06   25.6   0.0    2.5  3  TIGR02038 protease_degS: periplasmic serine peptidase DegS
    4.2e-08   30.4   0.3     0.0074   13.2   0.0    3.1  3  TIGR00225 prc: C-terminal processing peptidase
    4.7e-06   23.6   0.0     0.0038   14.1   0.0    2.9  3  TIGR02860 spore_IV_B: stage IV sporulation protein B
  ------ inclusion threshold ------
      0.034    9.9   0.1        2.3    3.8   0.0    2.7  3  TIGR03900 prc_long_Delta: putative carboxyl-terminal-processing protease, deltaproteobacterial


Domain annotation for each model (and alignments):
>> TIGR02037  degP_htrA_DO: peptidase Do
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0     2e-06    0.0013     261     317 ..     136     192 ..     117     204 .. 0.83
   2 !    7.7   0.0   0.00047      0.32     265     304 ..     221     261 ..     210     268 .. 0.79
   3 !   34.8   0.0   2.8e-12   1.9e-09     255     312 ..     302     359 ..     266     369 .. 0.83

  Alignments for each domain:
  == domain 1    score: 15.5 bits;  conditional E-value: 2e-06
   TIGR02037 261 alvaevlkgspAekaGlkaGDvilkvngkkiksaadlreaigtlkpgkkvklkilRk 317
                  +v +v++g +A +aGl aGD+i+ + +   +saa   +  ++++pg++++l++   
  MMETSP1137-20121227|6792_1 136 CVVVDVVSGKAAVEAGLLAGDIIVTIGDTVARSAALAWRLFKAASPGDTLSLGLATW 192
                 5899**********************9988888888888889999***999988655 PP

  == domain 2    score: 7.7 bits;  conditional E-value: 0.00047
   TIGR02037 265 evlkgspAekaGlkaGDvilkvn.gkkiksaadlreaigtl 304
                 + +   +A++aGl++GD il+v+ + +i++ +++ e++ ++
  MMETSP1137-20121227|6792_1 221 SSVAAXAADTAGLHVGDRILAVQdDARISTPEEFAEKVRSV 261
                 445567899**********9996156899999999999776 PP

  == domain 3    score: 34.8 bits;  conditional E-value: 2.8e-12
   TIGR02037 255 lekakGalvaevlkgspAekaGlkaGDvilkvngkkiksaadlreaigtlkpgkkvkl 312
                 + + +G l+++v++ spA+ aGl++GD+i++v+g+ ++s +++ ++ig+++   ++ +
  MMETSP1137-20121227|6792_1 302 VYRVQGGLISDVQPRSPARDAGLREGDIIVSVEGHLVSSGEEVIQHIGACSRSVQIVV 359
                 45679******************************************99876655555 PP

>> TIGR00054  TIGR00054: RIP metalloprotease RseP
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.0   0.0   0.00035      0.24     199     237 ..     134     169 ..     101     198 .. 0.78
   2 !    8.9   0.0   0.00019      0.13     205     252 ..     219     266 ..     193     271 .. 0.82
   3 !   18.9   0.0   1.7e-07   0.00012     205     257 ..     309     360 ..     302     363 .. 0.89

  Alignments for each domain:
  == domain 1    score: 8.0 bits;  conditional E-value: 0.00035
   TIGR00054 199 gpkielvlsdvvdnspaekaGlkeGDkilkidgeklksw 237
                 +p    v+ dvv+ ++a +aGl +GD i+ i ++ ++s 
  MMETSP1137-20121227|6792_1 134 VP---CVVVDVVSGKAAVEAGLLAGDIIVTIGDTVARSA 169
                 33...7999**********************98777764 PP

  == domain 2    score: 8.9 bits;  conditional E-value: 0.00019
   TIGR00054 205 vlsdvvdnspaekaGlkeGDkilki.dgeklkswrdlvklvkenpeksl 252
                 vls v    +a+ aGl+ GD+il + d+  +   +++   v++ pe s+
  MMETSP1137-20121227|6792_1 219 VLSSV-AAXAADTAGLHVGDRILAVqDDARISTPEEFAEKVRSVPEVSF 266
                 56665.7789999**********98345678888999999999888766 PP

  == domain 3    score: 18.9 bits;  conditional E-value: 1.7e-07
   TIGR00054 205 vlsdvvdnspaekaGlkeGDkilkidgeklkswrdlvklvkenpeksleikve 257
                  +sdv++ spa  aGl+eGD i++++g+ + s +++++ +    + s++i v 
  MMETSP1137-20121227|6792_1 309 LISDVQPRSPARDAGLREGDIIVSVEGHLVSSGEEVIQHIGA-CSRSVQIVVW 360
                 589******************************999999987.7777777665 PP

>> TIGR02038  protease_degS: periplasmic serine peptidase DegS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.0     0.011       7.5     280     326 ..     136     182 ..     121     198 .. 0.75
   2 ?   -2.6   0.0      0.72   4.9e+02     291     313 ..     228     250 ..     217     268 .. 0.66
   3 !   25.6   0.0     2e-09   1.4e-06     273     329 ..     301     357 ..     278     366 .. 0.82

  Alignments for each domain:
  == domain 1    score: 3.4 bits;  conditional E-value: 0.011
   TIGR02038 280 ivvtevdPngPaaragllvrdvilkldnkevisaeelmdrvaelrPg 326
                  vv +v     a +agll  d+i+ + +  + sa           Pg
  MMETSP1137-20121227|6792_1 136 CVVVDVVSGKAAVEAGLLAGDIIVTIGDTVARSAALAWRLFKAASPG 182
                 3666777778899************9998888877665555555555 PP

  == domain 2    score: -2.6 bits;  conditional E-value: 0.72
   TIGR02038 291 aaragllvrdvilkldnkevisa 313
                 a  agl v d il ++++  is+
  MMETSP1137-20121227|6792_1 228 ADTAGLHVGDRILAVQDDARIST 250
                 55678888888888776665554 PP

  == domain 3    score: 25.6 bits;  conditional E-value: 2e-09
   TIGR02038 273 gledlrgivvtevdPngPaaragllvrdvilkldnkevisaeelmdrvaelrPgskv 329
                 ++ +++g ++ +v+P +Pa  agl++ d+i++++++ v s ee+++++     + ++
  MMETSP1137-20121227|6792_1 301 AVYRVQGGLISDVQPRSPARDAGLREGDIIVSVEGHLVSSGEEVIQHIGACSRSVQI 357
                 566899*****************************************9876544433 PP

>> TIGR00225  prc: C-terminal processing peptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   0.0   1.1e-05    0.0074      52      96 ..     123     168 ..     112     180 .. 0.86
   2 !    4.6   0.0    0.0045         3      66      93 ..     219     246 ..     202     269 .. 0.83
   3 !    9.2   0.0   0.00017      0.12      66      96 ..     310     340 ..     291     363 .. 0.82

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 1.1e-05
   TIGR00225  52 GiGiqvqmedd.eivivsplegsPAekagikpgDkIikvdgksvag 96 
                  +Gi+v+ +++   v+v+++ g  A +ag+ +gD I+ ++++ + +
  MMETSP1137-20121227|6792_1 123 PVGIEVTCKSGvPCVVVDVVSGKAAVEAGLLAGDIIVTIGDTVARS 168
                 59******99977899***********************9985444 PP

  == domain 2    score: 4.6 bits;  conditional E-value: 0.0045
   TIGR00225  66 ivsplegsPAekagikpgDkIikvdgks 93 
                 + s ++   A  ag+++gD+I++v++  
  MMETSP1137-20121227|6792_1 219 VLSSVAAXAADTAGLHVGDRILAVQDDA 246
                 678888999***************8764 PP

  == domain 3    score: 9.2 bits;  conditional E-value: 0.00017
   TIGR00225  66 ivsplegsPAekagikpgDkIikvdgksvag 96 
                 i ++   sPA  ag++ gD I++v+g+ v +
  MMETSP1137-20121227|6792_1 310 ISDVQPRSPARDAGLREGDIIVSVEGHLVSS 340
                 6677789*******************97665 PP

>> TIGR02860  spore_IV_B: stage IV sporulation protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.0      0.05        34     118     165 ..     142     187 ..     103     199 .. 0.71
   2 !    4.5   0.0    0.0044         3     126     156 ..     228     259 ..     222     269 .. 0.82
   3 !   14.1   0.0   5.5e-06    0.0038     123     169 ..     316     361 ..     304     364 .. 0.84

  Alignments for each domain:
  == domain 1    score: 1.0 bits;  conditional E-value: 0.05
   TIGR02860 118 ekGkiesPaeeagiqvGDlilkvngekikeeedvaklineag.geklkl 165
                   Gk    a eag+  GD+i+ + ++  +++    +l++ a+ g +l+l
  MMETSP1137-20121227|6792_1 142 VSGKA---AVEAGLLAGDIIVTIGDTVARSAALAWRLFKAASpGDTLSL 187
                 44555...779************98877776666666666656666655 PP

  == domain 2    score: 4.5 bits;  conditional E-value: 0.0044
   TIGR02860 126 aeeagiqvGDlilkvng.ekikeeedvaklin 156
                 a++ag++vGD+il+v++  +i + e+ a++++
  MMETSP1137-20121227|6792_1 228 ADTAGLHVGDRILAVQDdARISTPEEFAEKVR 259
                 789************76157999998888876 PP

  == domain 3    score: 14.1 bits;  conditional E-value: 5.5e-06
   TIGR02860 123 esPaeeagiqvGDlilkvngekikeeedvaklineaggeklkltikR 169
                 +sPa+ ag++ GD+i++v+g+ + + e+v + i    ++++++++ R
  MMETSP1137-20121227|6792_1 316 RSPARDAGLREGDIIVSVEGHLVSSGEEVIQHIGAC-SRSVQIVVWR 361
                 69**************************99888644.5677777665 PP

>> TIGR03900  prc_long_Delta: putative carboxyl-terminal-processing protease, deltaproteobacterial
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   0.0    0.0033       2.3     143     182 ..     125     165 ..     122     174 .. 0.83
   2 ?   -0.9   0.0     0.087        59     155     185 ..     219     249 ..     208     268 .. 0.82
   3 ?    2.4   0.0    0.0089       6.1     157     181 ..     312     336 ..     274     366 .. 0.83

  Alignments for each domain:
  == domain 1    score: 3.8 bits;  conditional E-value: 0.0033
   TIGR03900 143 GiviamRdrk.ltVlrvlpetPAaraGlkakDrivkidees 182
                 Gi+++ + +   +V+ v+ +  A  aGl a D iv i++  
  MMETSP1137-20121227|6792_1 125 GIEVTCKSGVpCVVVDVVSGKAAVEAGLLAGDIIVTIGDTV 165
                 777777776426899**********************9965 PP

  == domain 2    score: -0.9 bits;  conditional E-value: 0.087
   TIGR03900 155 VlrvlpetPAaraGlkakDrivkideestvn 185
                 Vl  +    A+ aGl+  Dri++++++  + 
  MMETSP1137-20121227|6792_1 219 VLSSVAAXAADTAGLHVGDRILAVQDDARIS 249
                 67777788899*************9997665 PP

  == domain 3    score: 2.4 bits;  conditional E-value: 0.0089
   TIGR03900 157 rvlpetPAaraGlkakDrivkidee 181
                  v p +PA+ aGl++ D iv ++  
  MMETSP1137-20121227|6792_1 312 DVQPRSPARDAGLREGDIIVSVEGH 336
                 57899***************99865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (422 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       113  (0.0275475); expected 82.0 (0.02)
Passed bias filter:                       97  (0.023647); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.41u 0.18s 00:00:00.59 Elapsed: 00:00:00.72
# Mc/sec: 773.60
//
Query:       MMETSP1137-20121227|6793_1  [L=323]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (323 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       124  (0.0302292); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.14s 00:00:00.38 Elapsed: 00:00:00.36
# Mc/sec: 1184.24
//
Query:       MMETSP1137-20121227|6794_1  [L=131]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (131 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        98  (0.0238908); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.13s 00:00:00.28 Elapsed: 00:00:00.39
# Mc/sec: 443.35
//
Query:       MMETSP1137-20121227|6795_1  [L=361]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (361 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        77  (0.0187713); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.17s 00:00:00.45 Elapsed: 00:00:00.35
# Mc/sec: 1361.37
//
Query:       MMETSP1137-20121227|6796_1  [L=191]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      0.008   13.5   0.0      0.051   10.8   0.0    1.9  2  TIGR03162 ribazole_cobC: alpha-ribazole phosphatase
  ------ inclusion threshold ------
      0.035   11.8   0.0      0.059   11.1   0.0    1.4  1  TIGR00249 sixA: phosphohistidine phosphatase SixA
      0.036   11.3   0.0       0.16    9.2   0.0    1.8  2  TIGR01258 pgm_1: phosphoglycerate mutase 1 family


Domain annotation for each model (and alignments):
>> TIGR03162  ribazole_cobC: alpha-ribazole phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.8   0.0   3.8e-05     0.051      26      64 ..       4      44 ..       1      61 [. 0.72
   2 ?    0.4   0.0     0.062        85     134     149 ..     125     141 ..     117     162 .. 0.77

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 3.8e-05
   TIGR03162 26 ekgeeqaaalrekl..edvkfdavvsSplsRcrelAellae 64
                + g++q+ +++++l  +   +d v+sS l+R+ e+A l+  
  MMETSP1137-20121227|6796_1  4 KXGWTQSLNAHNALehDGIAADMVMSSRLMRAMETASLVFG 44
                66778888888888445678999*************99873 PP

  == domain 2    score: 0.4 bits;  conditional E-value: 0.062
   TIGR03162 134 e.ekenvlivtHgGvir 149
                 + e+ +++iv+Hg  ++
  MMETSP1137-20121227|6796_1 125 RgENTTIAIVSHGNFLQ 141
                 3578999*****98776 PP

>> TIGR00249  sixA: phosphohistidine phosphatase SixA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   4.3e-05     0.059      23      63 ..       2      42 ..       1      56 [. 0.92

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 4.3e-05
   TIGR00249 23 LtkkGkdeaervaqwLkkagveldrilvSplvRAeqtaeiv 63
                +tk G  ++    + L++ g+  d ++ S l+RA +ta  v
  MMETSP1137-20121227|6796_1  2 ITKXGWTQSLNAHNALEHDGIAADMVMSSRLMRAMETASLV 42
                689999999999*************************9877 PP

>> TIGR01258  pgm_1: phosphoglycerate mutase 1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   0.0   0.00011      0.16      28      68 ..       3      43 ..       1      47 [. 0.90
   2 ?   -0.4   0.0       0.1   1.4e+02     172     185 ..     127     140 ..     115     144 .. 0.84

  Alignments for each domain:
  == domain 1    score: 9.2 bits;  conditional E-value: 0.00011
   TIGR01258 28 sekGkeeakeagkllkeeklefdvaytsllkraiktlnivl 68
                ++ G  ++ +a ++l+++++  d++ +s l ra++t+ +v+
  MMETSP1137-20121227|6796_1  3 TKXGWTQSLNAHNALEHDGIAADMVMSSRLMRAMETASLVF 43
                677888899999************************99875 PP

  == domain 2    score: -0.4 bits;  conditional E-value: 0.1
   TIGR01258 172 sgkrvlivahGnsl 185
                 ++ ++ iv+hGn l
  MMETSP1137-20121227|6796_1 127 ENTTIAIVSHGNFL 140
                 678999******87 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (191 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        79  (0.0192589); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.18u 0.15s 00:00:00.32 Elapsed: 00:00:00.35
# Mc/sec: 720.28
//
Query:       MMETSP1137-20121227|6797_1  [L=174]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (174 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        46  (0.011214); expected 82.0 (0.02)
Passed bias filter:                       35  (0.00853242); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.15s 00:00:00.32 Elapsed: 00:00:00.43
# Mc/sec: 534.10
//
Query:       MMETSP1137-20121227|6798_1  [L=410]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (410 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       116  (0.0282789); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.16s 00:00:00.46 Elapsed: 00:00:00.31
# Mc/sec: 1745.66
//
Query:       MMETSP1137-20121227|6799_1  [L=449]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-06   25.1   0.2    4.1e-06   23.5   0.1    1.8  1  TIGR00990 3a0801s09: mitochondrial precursor proteins import receptor


Domain annotation for each model (and alignments):
>> TIGR00990  3a0801s09: mitochondrial precursor proteins import receptor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.5   0.1     1e-09   4.1e-06     165     237 ..      80     152 ..      77     171 .. 0.89

  Alignments for each domain:
  == domain 1    score: 23.5 bits;  conditional E-value: 1e-09
   TIGR00990 165 nraacynaladlekvvedttaaleldpdyvkalnrranaydqlgkyadalldltassliddfrdeqsaqaver 237
                 n+a c   l d+++    ttaa+e dp  vkal rra++   + +  +a+ldl   s +  ++ e  + +ve 
  MMETSP1137-20121227|6799_1  80 NMALCCMKLEDWHQSDVCTTAAIEDDPFCVKALFRRAKTRRMMRRPVEAMLDLRCASAVAPLETEVLQAIVET 152
                 8999**************************************************9999999888888777775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (449 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       188  (0.0458313); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.14s 00:00:00.48 Elapsed: 00:00:00.52
# Mc/sec: 1139.68
//
Query:       MMETSP1137-20121227|6800_1  [L=134]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (134 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        88  (0.0214529); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.14s 00:00:00.32 Elapsed: 00:00:00.36
# Mc/sec: 491.29
//
Query:       MMETSP1137-20121227|6801_1  [L=117]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (117 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        39  (0.00950756); expected 82.0 (0.02)
Passed bias filter:                       36  (0.00877621); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.15s 00:00:00.28 Elapsed: 00:00:00.33
# Mc/sec: 467.96
//
Query:       MMETSP1137-20121227|6802_1  [L=788]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (788 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       130  (0.0316919); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.49u 0.16s 00:00:00.65 Elapsed: 00:00:00.61
# Mc/sec: 1705.04
//
Query:       MMETSP1137-20121227|6804_1  [L=72]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        65  (0.0158459); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.31
# Mc/sec: 306.56
//
Query:       MMETSP1137-20121227|6806_1  [L=396]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.3e-98  325.2   0.0      9e-98  324.9   0.0    1.1  1  TIGR00670 asp_carb_tr: aspartate carbamoyltransferase
    8.7e-41  137.9   0.0      1e-40  137.6   0.0    1.1  1  TIGR00658 orni_carb_tr: ornithine carbamoyltransferase
    6.8e-12   43.3   0.1    1.3e-10   39.0   0.0    2.7  2  TIGR03316 ygeW: probable carbamoyltransferase YgeW


Domain annotation for each model (and alignments):
>> TIGR00670  asp_carb_tr: aspartate carbamoyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  324.9   0.0  6.6e-101     9e-98      17     303 ..       1     289 [.       1     290 [. 0.97

  Alignments for each domain:
  == domain 1    score: 324.9 bits;  conditional E-value: 6.6e-101
   TIGR00670  17 llekaeelkqklsskekskalkgkivaalFfEpSTRTrlSFetaakrlggsvvnlsdseasSvaKgEtlaDTikvleaysvdiiviRhrlegaarliaevaevpviNaGdGknqHPtQtLLDlyTileefg....rldglkvalvGDlkygRtvhSlvkaLalfg..vevylvaPeeLrlpkeileelkkkgvkvketesleevleeaDvlyvtRiQkERlpdleeleklkeaykitkerlealkkevkvlHPlPvnrvdeiesevldtekaklfkQaknGvavRmallelll 303
                 ++++a+++k+ +++k     l g+i+a++F+EpSTRT  SF  a+krlgg+v+ +s+ ++sS++KgEt+ DT++ l+ y +d++v+Rh+++g a ++a+ a+ pviNaGdG ++HPtQ+LLDl+T  +       +l+gl+++lvGDlk+gRtvhSl    +++    ++  v+P+ L++p+++  +l+++gv+v+et+ l+ +l ++DvlyvtR+Q+ER+ d+ee++k  ++y ++k+ +e +++++ vlHPlP  rvdei+++v+ +++ak+f+Q++nG+ vRmall+l+l
  MMETSP1137-20121227|6806_1   1 VFSTAAKMKRMVKEKGAAPILAGRILANVFYEPSTRTMCSFDAAMKRLGGQVISVSE-SSSSAKKGETIEDTVRCLQCY-CDVLVLRHPEKGTAARAASAASKPVINAGDGVGEHPTQALLDLFTTFNARDngsaDLSGLTLTLVGDLKHGRTVHSLSLLASKASppPRILCVSPQPLAMPEHVTATLRSRGVQVEETTDLRAALPSTDVLYVTRVQRERFADEEEYKKHAGSYVVDKQLMELAPAHMMVLHPLP--RVDEIATDVDADPRAKYFEQMENGMYVRMALLALVL 289
                 689************9989**************************************.99*******************.********************************************998765445889********************988888777779***************************************************************************************..*********************************997 PP

>> TIGR00658  orni_carb_tr: ornithine carbamoyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  137.6   0.0   7.6e-44     1e-40      19     303 ..       3     289 ..       1     290 [. 0.88

  Alignments for each domain:
  == domain 1    score: 137.6 bits;  conditional E-value: 7.6e-44
   TIGR00658  19 elakklkkekkkgkeekklkgktlaliFekrstRtRvsfevaayelGaqvlylnkeelqlgrkesikDtarvlsryvdaivvRvykhedveelakyasvPvingLtd.lehPcqilaDlltikeklg....klkevklvyvGDa..nnvanslllaaaklGl..dvvvatPeglepeaeivkkakkiakenggkleltedpkkavkdadviytDvwvsmGeeekkeerlkllkpyqvneellelakpevkflhCLPavrGeevtdevlegeasivfdeaenRlhaqkavlkall 303
                  +a+k+k+  k++    +l g+ la +F+ +stRt +sf++a+ +lG+qv+ ++++++   ++e+i+Dt r l+ y d++v+R  ++ +    a+ as Pvin+     ehP+q+l Dl+t  +  +    +l++++l+ vGD      ++sl l a k      +  ++P+ l + ++++ +     +  g ++e t d   a+  +dv+y    v     +++ee  k    y v+++l+ela  ++++lh LP+v   e++ +v   ++   f++ en +++ +a+l+++l
  MMETSP1137-20121227|6806_1   3 STAAKMKRMVKEKGAAPILAGRILANVFYEPSTRTMCSFDAAMKRLGGQVISVSESSSSAKKGETIEDTVRCLQCYCDVLVLRHPEKGTAARAASAASKPVINAGDGvGEHPTQALLDLFTTFNARDngsaDLSGLTLTLVGDLkhGRTVHSLSLLASKASPppRILCVSPQPLAMPEHVTATL----RSRGVQVEETTDLRAALPSTDVLYVT-RVQRERFADEEEYKKHAGSYVVDKQLMELAPAHMMVLHPLPRVD--EIATDVDADPRAKYFEQMENGMYVRMALLALVL 289
                 679999*999999999***************************************************************************************8755269***********98776555678***********86567889998888877651156667899998887776555....679********************964.3444555566667778899**********************998..*****************************9887 PP

>> TIGR03316  ygeW: probable carbamoyltransferase YgeW
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.0   0.0   9.6e-14   1.3e-10      20     106 ..       1      87 [.       1     145 [. 0.84
   2 ?    0.5   0.0     0.049        67     275     354 ..     211     285 ..     180     288 .. 0.64

  Alignments for each domain:
  == domain 1    score: 39.0 bits;  conditional E-value: 9.6e-14
   TIGR03316  20 vldvaaalkalraenistkllesglgislfrdnstrtrfsfasalnllGleaqdldegksqiahGetvretaevisfladaiGirdd 106
                 v+  aa++k++ +e+    +l  ++   +f++ strt  sf++a++ lG++++ + e  s   +Get+ +t++ +  ++d++ +r+ 
  MMETSP1137-20121227|6806_1   1 VFSTAAKMKRMVKEKGAAPILAGRILANVFYEPSTRTMCSFDAAMKRLGGQVISVSESSSSAKKGETIEDTVRCLQCYCDVLVLRHP 87 
                 678899999999999999**************************************************************9999875 PP

  == domain 2    score: 0.5 bits;  conditional E-value: 0.049
   TIGR03316 275 lellekellaqnkkyk....dwecteelmkltkdgealymhclpadisGvsckegevteevldkyrvviykeasyklyviaali 354
                 +  +++e +a++++yk     ++++++lm+l+   + + +h lp           e+  +v   +r + +++ ++ +yv  al+
  MMETSP1137-20121227|6806_1 211 VTRVQRERFADEEEYKkhagSYVVDKQLMELAP-AHMMVLHPLPRV--------DEIATDVDADPRAKYFEQMENGMYVRMALL 285
                 455555556655555411124678888888887.677778888753........466666666677777777777777766665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (396 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        98  (0.0238908); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.33u 0.14s 00:00:00.47 Elapsed: 00:00:00.57
# Mc/sec: 901.17
//
Query:       MMETSP1137-20121227|6808_1  [L=159]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (159 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        64  (0.0156021); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.16s 00:00:00.32 Elapsed: 00:00:00.37
# Mc/sec: 567.20
//
Query:       MMETSP1137-20121227|6809_1  [L=210]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (210 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        83  (0.020234); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.14s 00:00:00.32 Elapsed: 00:00:00.37
# Mc/sec: 749.13
//
Query:       MMETSP1137-20121227|6810_1  [L=1023]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1023 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        63  (0.0153584); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.58u 0.16s 00:00:00.74 Elapsed: 00:00:01.86
# Mc/sec: 725.94
//
Query:       MMETSP1137-20121227|6811_1  [L=258]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.5e-12   44.3   0.0    4.1e-08   30.4   0.0    2.8  3  TIGR03417 chol_sulfatase: choline-sulfatase


Domain annotation for each model (and alignments):
>> TIGR03417  chol_sulfatase: choline-sulfatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.4   0.0   9.9e-12   4.1e-08     253     347 ..      13     101 ..       9     109 .. 0.88
   2 ?    0.3   0.0     0.013        53     349     377 ..     140     168 ..     121     190 .. 0.85
   3 !    9.7   0.0   1.8e-05     0.076     399     428 ..     213     242 ..     205     253 .. 0.82

  Alignments for each domain:
  == domain 1    score: 30.4 bits;  conditional E-value: 9.9e-12
   TIGR03417 253 rayfaaisyvddkiGellevleetrladdtivvfvsdhGdmlGerGlwykmsffegsarvPllvaaperlea.grveaavstvdllPtlvelagve 347
                 r + +a++++d  +G +l +l + ++a dt+++++sdh  +  ++G     + +  ++r Pll++ p+++ +  rv++ vs++d+  t ++ a ++
  MMETSP1137-20121227|6811_1  13 RHFETALAWLDRGVGTVLWALGRRGVASDTLLILTSDHAPV--DKG-----HCYSRGTRTPLLMQWPRAIGTnVRVHSLVSHLDVAATAIDAAAID 101
                 55668999******************************987..666.....67889************99651689999************99987 PP

  == domain 2    score: 0.3 bits;  conditional E-value: 0.013
   TIGR03417 349 eevlpaldGeslvpllkgkerkdevlgey 377
                 ++  p ldG sl+p+l++++++ e+  e 
  MMETSP1137-20121227|6811_1 140 SAGGPPLDGVSLLPMLRNAQSRVEISDEV 168
                 5566889*********9999988887775 PP

  == domain 3    score: 9.7 bits;  conditional E-value: 1.8e-05
   TIGR03417 399 ceadPeqlydleadPkelenlaeepehaet 428
                 +  d eql+dl+ dP e++nl +  ++a++
  MMETSP1137-20121227|6811_1 213 SYFDTEQLFDLSVDPAERRNLVRMLDEANA 242
                 66799****************987666554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (258 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        91  (0.0221843); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.24u 0.19s 00:00:00.43 Elapsed: 00:00:00.45
# Mc/sec: 756.74
//
Query:       MMETSP1137-20121227|6812_1  [L=285]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (285 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       162  (0.0394929); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.18s 00:00:00.41 Elapsed: 00:00:00.33
# Mc/sec: 1139.91
//
Query:       MMETSP1137-20121227|6813_1  [L=87]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (87 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        56  (0.0136519); expected 82.0 (0.02)
Passed bias filter:                       27  (0.00658216); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.14s 00:00:00.26 Elapsed: 00:00:00.34
# Mc/sec: 337.74
//
Query:       MMETSP1137-20121227|6814_1  [L=158]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.2e-06   25.4   0.2    1.3e-06   25.2   0.2    1.0  1  TIGR03207 cyc_hxne_CoA_dh: cyclohexanecarboxyl-CoA dehydrogenase
    0.00018   18.5   0.1    0.00023   18.2   0.1    1.1  1  TIGR03203 pimD_small: pimeloyl-CoA dehydrogenase, small subunit


Domain annotation for each model (and alignments):
>> TIGR03207  cyc_hxne_CoA_dh: cyclohexanecarboxyl-CoA dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.2   0.2   6.6e-10   1.3e-06     278     369 ..       4      98 ..       1     101 [. 0.85

  Alignments for each domain:
  == domain 1    score: 25.2 bits;  conditional E-value: 6.6e-10
   TIGR03207 278 fpladletqveaarllclrtlwlkd.hglphtse.aamckwwapklaydvihqcllshghggydrg.dleqrlrdvlglqigdgtaqimktiiar 369
                   +a+   q+e +rll l t    d hg   + +  amck  ap++ ++v    + ++g  g +++ +l   +  +  l+i dg  ++  + i+r
  MMETSP1137-20121227|6814_1   4 AAVAECRLQIEQTRLLVLSTAAAMDrHGSKAARQlIAMCKVAAPRMGCHVADVAMQVFGGAGVSQDtPLAHAYASLRTLRIADGPDEVHLLQIGR 98 
                 56899999**********9988777255544433379**************************99989****************99988877777 PP

>> TIGR03203  pimD_small: pimeloyl-CoA dehydrogenase, small subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.1   1.1e-07   0.00023     284     371 ..       8      95 ..       2      99 .. 0.90

  Alignments for each domain:
  == domain 1    score: 18.2 bits;  conditional E-value: 1.1e-07
   TIGR03203 284 dmfvaveqarsmalfatmaadfddakeranaiaaakvqigkslkfvgqqsiqlhggigmtmeakighyfkrltmiektfgdtdyhlar 371
                 +  + +eq+r + l ++ a d + +k   + ia +kv   + +  v + ++q+ gg g++ ++ + h +  l  +  + g  + hl +
  MMETSP1137-20121227|6814_1   8 ECRLQIEQTRLLVLSTAAAMDRHGSKAARQLIAMCKVAAPRMGCHVADVAMQVFGGAGVSQDTPLAHAYASLRTLRIADGPDEVHLLQ 95 
                 556779********9999****************************************************999999888888888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (158 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       102  (0.0248659); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.19u 0.11s 00:00:00.30 Elapsed: 00:00:00.45
# Mc/sec: 463.43
//
Query:       MMETSP1137-20121227|6815_1  [L=358]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   3.8e-107  355.9   0.2   4.4e-107  355.7   0.2    1.0  1  TIGR00747 fabH: 3-oxoacyl-[acyl-carrier-protein] synthase III
    4.7e-19   66.6   0.4    1.1e-08   32.5   0.1    2.2  2  TIGR00748 HMG_CoA_syn_Arc: putative hydroxymethylglutaryl-CoA synthase
    1.7e-06   24.9   0.0    4.2e-05   20.3   0.0    2.0  2  TIGR01835 HMG-CoA-S_prok: hydroxymethylglutaryl-CoA synthase
      0.003   14.4   0.3      0.022   11.5   0.1    2.0  2  TIGR01930 AcCoA-C-Actrans: acetyl-CoA C-acetyltransferase


Domain annotation for each model (and alignments):
>> TIGR00747  fabH: 3-oxoacyl-[acyl-carrier-protein] synthase III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  355.7   0.2  4.3e-110  4.4e-107       3     322 .]      34     357 ..      32     357 .. 0.96

  Alignments for each domain:
  == domain 1    score: 355.7 bits;  conditional E-value: 4.3e-110
   TIGR00747   3 akilsvgsylPekvltnadlekmvdtsDeWivtRtGikeRriAaddetssslgveaakkAieaAklskddidliivattspdlafPsaaalvqakLgikdipafDlsAaCaGflYalsvakayvesGkyktvLvvgaeklsslvdlkDRgtcvlFgDGagavvvgeseeegeilsvelgadgekgellrlpaaekr.....aekekeekskfivmeGkevFklAvrkleeaveevleaaglkkedidllvPHqAnlRiiealakklelkeekvvktvekygntsAasiplaldelleegkikkgdlllleafGgGltwgaalvrf 322
                 +++++vgs  P+ v++nadle +vdtsDeWi++RtGi+ R++ ++ e+ + l+v++ ++A+e+A++ +++++l+i+at spd  f  aa+ +  ++g+ +++afDl+AaC+Gfl+++++a+++++ G+ykt++v+ga+ ls+ vd+ DR+tcvlFgDGagavv+  s+ e ++l +e++++g     l l+ + ++      ++ +++  + i+m+Gkev+k+A   + ++ +e++e a+++ ++id+l+ HqAn+Ri+e +akkl + +ekv+ ++++ygntsA siplald++++egk+k+gdl+ + +fG+Gl+wg+a++r+
  MMETSP1137-20121227|6815_1  34 SRLVGVGSCAPSLVVSNADLEAIVDTSDEWISKRTGIRRRHLLGPGESLTGLAVTSVRNALENAGIGAEEVELVIMATSSPDDLFGDAACIA-REVGAVNAVAFDLTAACSGFLFGVNTASQFLHNGAYKTAVVIGADALSRWVDWGDRNTCVLFGDGAGAVVMRXSDAECGVLGFEMHSNGAGRCDLNLEYSGTEkdlasIAQVTTGAYSPIAMNGKEVYKFATSMVPQVLTEAMESAEVTADQIDWLLLHQANIRIMETVAKKLGIPMEKVISNLDEYGNTSAGSIPLALDAAVREGKVKPGDLIAVAGFGAGLSWGSAVIRW 357
                 789************************************************************************************99965.578**************************************************************************************998888877655443454466777899999***************************************************************************************************************98 PP

>> TIGR00748  HMG_CoA_syn_Arc: putative hydroxymethylglutaryl-CoA synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.5   0.1   1.1e-11   1.1e-08       4     142 ..      36     172 ..      33     201 .. 0.92
   2 !   32.2   0.0   1.3e-11   1.4e-08     216     298 ..     266     348 ..     252     356 .. 0.87

  Alignments for each domain:
  == domain 1    score: 32.5 bits;  conditional E-value: 1.1e-11
   TIGR00748   4 ivgygayipkyrikveeiarvwgddpeaiskgllveekavpgldedtatiaveaarnalkrakidpkdigavyvgseskpyavkptativaeaieatpdltaadlefackagtagiqaalglvesglikyglaigadta 142
                 +vg g+  p+  + + ++  + +   e isk   +  + + g+ e    +av + rnal  a i  ++++ v +   s p  +   a+ +a  ++a     a dl  ac     g+++a  +++ g  k ++ igad+ 
  MMETSP1137-20121227|6815_1  36 LVGVGSCAPSLVVSNADLEAIVDTSDEWISKRTGIRRRHLLGPGESLTGLAVTSVRNALENAGIGAEEVELVIMA-TSSPDDLFGDAACIAREVGAVNA-VAFDLTAACSGFLFGVNTASQFLHNGAYKTAVVIGADAL 172
                 79********************************************************************99876.577999999999*******9865.699**********************************74 PP

  == domain 2    score: 32.2 bits;  conditional E-value: 1.3e-11
   TIGR00748 216 glmeklglkaedfdyavfhqpngkfylkaarilglekekvkpglltpvigntysgatpvglsavld..vaepgerilavsygsga 298
                   me   ++a++ d+ ++hq n +++  +a++lg++ ekv   l     gnt +g++p+ l a +    ++pg+ i +  +g+g 
  MMETSP1137-20121227|6815_1 266 EAMESAEVTADQIDWLLLHQANIRIMETVAKKLGIPMEKVISNL--DEYGNTSAGSIPLALDAAVRegKVKPGDLIAVAGFGAGL 348
                 4699999*********************************9988..578************9887523689*****9999*9995 PP

>> TIGR01835  HMG-CoA-S_prok: hydroxymethylglutaryl-CoA synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   0.0   4.1e-08   4.2e-05      13     158 ..      46     196 ..      38     213 .. 0.77
   2 ?    2.5   0.0     0.011        11     262     307 ..     303     347 ..     283     350 .. 0.86

  Alignments for each domain:
  == domain 1    score: 20.3 bits;  conditional E-value: 4.1e-08
   TIGR01835  13 yyldlsaLaeargvdpeklskgigqkklavpsideDivtlAasAakailden..dkskidivlvatEsgiDqskaaavyvhrllglspiarsvelkeACygAtaalqlakshvarspdkkvlviasD.iakY....eletpgEatqGAgavAl 158
                 +++   +L +  ++  e +sk  g ++  + ++ e    lA + +++ l+++  + +++++v++at s  D    aa  + r +g   +a +++l  AC g   ++++a + +++   k  +vi++D ++++    +++t      GAgav +
  MMETSP1137-20121227|6815_1  46 LVVSNADLEAIVDTSDEWISKRTGIRRRHLLGPGESLTGLAVTSVRNALENAgiGAEEVELVIMATSSPDDLFGDAAC-IAREVGA-VNAVAFDLTAACSGFLFGVNTASQFLHNGAYKTAVVIGADaLSRWvdwgDRNTCVLFGDGAGAVVM 196
                 555555565666666666666666666667777888889************98889**********887666665555.5555554.46789**********************************954565444467888888899999988 PP

  == domain 2    score: 2.5 bits;  conditional E-value: 0.011
   TIGR01835 262 eesiaynrevGnlYtgslyLslaslLenaeedltGekigllsYGsG 307
                 e+ i   +e Gn+  gs+ L+l + + +  + + G+ i++  +G+G
  MMETSP1137-20121227|6815_1 303 EKVISNLDEYGNTSAGSIPLALDAAVREG-KVKPGDLIAVAGFGAG 347
                 5667777899*************999888.999***********98 PP

>> TIGR01930  AcCoA-C-Actrans: acetyl-CoA C-acetyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.5   0.1   2.2e-05     0.022      24     118 ..      85     177 ..      78     193 .. 0.82
   2 ?    0.7   0.0      0.04        41     280     325 ..     253     299 ..     212     322 .. 0.65

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 2.2e-05
   TIGR01930  24 LlaavikelleragldpekidevilGnvlqageqaniaReaalaaglpesvpaltvnrvCaSglqAvalaaqkikaGeadvvvaGGvEsmSrvpi 118
                 L+++ ++++le ag+ +e+++ vi++++ +    +  a  +a + g   +  a++++ +C+  l  v++a q ++ G+++++v+ G++ +Sr   
  MMETSP1137-20121227|6815_1  85 LAVTSVRNALENAGIGAEEVELVIMATSSPDDL-FGDAACIAREVGA-VNAVAFDLTAACSGFLFGVNTASQFLHNGAYKTAVVIGADALSRWVD 177
                 889999*******************99887652.3333333344443.457799*************************************9765 PP

  == domain 2    score: 0.7 bits;  conditional E-value: 0.04
   TIGR01930 280 eemglgpv.pAiekaLkkaglsisdidlvEinEAFAaqvlavekelg 325
                  ++ ++ v +  ++a++ a++++++id+  ++ A    + +v+k+lg
  MMETSP1137-20121227|6815_1 253 YKFATSMVpQVLTEAMESAEVTADQIDWLLLHQANIRIMETVAKKLG 299
                 34444333034567777778888888887777777766666666666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (358 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       156  (0.0380302); expected 82.0 (0.02)
Passed bias filter:                      115  (0.0280351); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.30u 0.18s 00:00:00.48 Elapsed: 00:00:00.65
# Mc/sec: 726.96
//
Query:       MMETSP1137-20121227|6816_1  [L=426]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (426 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       145  (0.0353486); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.15s 00:00:00.59 Elapsed: 00:00:00.49
# Mc/sec: 1147.50
//
Query:       MMETSP1137-20121227|6817_1  [L=345]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.8e-32  109.5   0.0      6e-32  109.2   0.0    1.1  1  TIGR02349 DnaJ_bact: chaperone protein DnaJ
    4.8e-21   72.7   3.6    6.3e-21   72.3   2.5    1.1  1  TIGR03835 termin_org_DnaJ: terminal organelle assembly protein TopJ


Domain annotation for each model (and alignments):
>> TIGR02349  DnaJ_bact: chaperone protein DnaJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  109.2   0.0   2.9e-35     6e-32       1     128 [.      82     216 ..      82     220 .. 0.75

  Alignments for each domain:
  == domain 1    score: 109.2 bits;  conditional E-value: 2.9e-35
   TIGR02349   1 dYYeiLgvskdAseeeikkAYrklakkyHPDrnkgeke.aeekfkeineAyevLsdeekraqYDqfghagleggaggggagfegfeasefgd..igdifeeffggggg...sgrr..rskarrgedlevelelsle 128
                 dYY +Lgv++dAs+++ikkAYr+ a k+HPD+n+++k+ ae +fkei++A++vLs+ + ra+YD++g +++ +  g g+ + ++ ++   ++   +dif++ffg   g   s+rr  ++++   +d    ++l++ 
  MMETSP1137-20121227|6817_1  82 DYYRVLGVERDASDADIKKAYRREALKWHPDKNPDNKDaAERRFKEISQAFKVLSNGDERAHYDRYGDEQTARPRGPGAPSHAHANM-YAEElsPEDIFNMFFGIPPGargSRRRprPHQRAPPSDDIHVVNLNFV 216
                 9*********************************977625779***************************99976665444444333.33334478*******976654324444543333334455555666665 PP

>> TIGR03835  termin_org_DnaJ: terminal organelle assembly protein TopJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.3   2.5   3.1e-24   6.3e-21       3      68 ..      82     149 ..      80     156 .. 0.93

  Alignments for each domain:
  == domain 1    score: 72.3 bits;  conditional E-value: 3.1e-24
   TIGR03835   3 DyyevLgidrDadeqeikkafrkLakkyhPDrnka.ad.aakifaeineandvLsnPkkraryDkyGh 68 
                 Dyy vLg++rDa + +ikka+r+ a k+hPD+n +  d a++ f+ei  a+ vLsn + ra+yD+yG 
  MMETSP1137-20121227|6817_1  82 DYYRVLGVERDASDADIKKAYRREALKWHPDKNPDnKDaAERRFKEISQAFKVLSNGDERAHYDRYGD 149
                 9********************************9985526789************************6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (345 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        69  (0.0168211); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.27u 0.13s 00:00:00.40 Elapsed: 00:00:00.40
# Mc/sec: 1138.41
//
Query:       MMETSP1137-20121227|6818_1  [L=708]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   3.1e-174  578.2   0.0   4.1e-174  577.8   0.0    1.1  1  TIGR01241 FtsH_fam: ATP-dependent metallopeptidase HflB
    3.7e-70  234.7   0.2    5.3e-70  234.2   0.1    1.1  1  TIGR01242 26Sp45: 26S proteasome subunit P45 family
    1.7e-63  212.9   0.0    4.6e-63  211.5   0.0    1.3  1  TIGR01243 CDC48: AAA family ATPase, CDC48 subfamily
    4.7e-32  109.2   0.1    7.6e-32  108.5   0.1    1.2  1  TIGR03689 pup_AAA: proteasome ATPase
    4.7e-07   26.5   0.4    1.2e-06   25.2   0.1    1.7  2  TIGR03922 T7SS_EccA: type VII secretion AAA-ATPase EccA
    1.1e-05   22.4   0.0      2e-05   21.6   0.0    1.3  1  TIGR00382 clpX: ATP-dependent Clp protease, ATP-binding subunit ClpX
    1.3e-05   22.1   0.3    0.00041   17.2   0.0    2.2  2  TIGR00390 hslU: ATP-dependent protease HslVU, ATPase subunit
    2.1e-05   21.5   0.0    3.9e-05   20.6   0.0    1.4  1  TIGR00635 ruvB: Holliday junction DNA helicase RuvB
    9.8e-05   18.5   0.1    0.00065   15.8   0.0    2.0  1  TIGR02639 ClpA: ATP-dependent Clp protease ATP-binding subunit ClpA
    0.00061   16.6   0.5     0.0049   13.6   0.0    2.5  3  TIGR02928 TIGR02928: orc1/cdc6 family replication initiation protein
     0.0011   15.3   0.0     0.0021   14.4   0.0    1.4  1  TIGR00763 lon: ATP-dependent protease La
     0.0014   16.0   0.1     0.0026   15.1   0.0    1.3  1  TIGR02640 gas_vesic_GvpN: gas vesicle protein GvpN
     0.0017   15.5   0.2      0.019   12.0   0.0    2.2  2  TIGR02397 dnaX_nterm: DNA polymerase III, subunit gamma and tau
     0.0023   14.4   0.0      0.011   12.2   0.0    2.0  2  TIGR02902 spore_lonB: ATP-dependent protease LonB
     0.0045   13.9   0.0      0.021   11.7   0.0    2.0  1  TIGR02881 spore_V_K: stage V sporulation protein K
     0.0064   12.8   0.0     0.0098   12.2   0.0    1.2  1  TIGR02903 spore_lon_C: ATP-dependent protease, Lon family
  ------ inclusion threshold ------
      0.014   11.8   0.1      0.026   10.9   0.1    1.4  1  TIGR00368 TIGR00368: Mg chelatase-like protein


Domain annotation for each model (and alignments):
>> TIGR01241  FtsH_fam: ATP-dependent metallopeptidase HflB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  577.8   0.0  1.7e-176  4.1e-174      54     495 ..     245     674 ..     228     675 .. 0.97

  Alignments for each domain:
  == domain 1    score: 577.8 bits;  conditional E-value: 1.7e-176
   TIGR01241  54 tfkdvaGideakeelveivdfLknpkkftklGakiPkGvllvGpPGtGktLlakavaGeagvpffsisGsdfvemfvGvGasrvrDlfeqakknaPciifiDeiDavGrkrgaglgggndereqtLnqlLvemDGfetnegvivlaatnrpdvLDkaLlrPGrfDrqvvvdkPdlkgreeilkvhakkvklaeevdlkkvarrtpGfsGadlanlvneaallaarknkkevtlkeleeavdrviaGlekksrvisekekklvayheaGhalvgllvkeadkvkkvtiiprGqalGvtlslPeedklllskkellakiavllgGrvaeeiifg..evttGasnDlkkatkiaramvtelGmseklgavayeeeeeevllgkelkkekeyseetakeiDeevkriieeaykkakeilkekkeelellakeLleketiekeelkell 495
                 +f dv G+dea  el++iv++L++pk+ft+lG+k PkGvll+GpPGtGktLla+avaGeagvpff +sGs+f e+fvGvGa+rvr+lf  akk+aPci+fiDeiDa+G++r+    + ++    tLnqlLvemDGf++n+gvivlaatn p+ LD+aL+rPGrfD +vvv +Pd++gr++il+++ak + l++ vdl+++ar+tpGfsGadlanl+n aal a+  +kk+vt+ +le a d++ +G+e+ks vis+++ kl+ayhe+Ghalv+l+++ a++++k ti+prG++lG++ +lPe+d+l l+++++la+i++++gGr+aee+ifg  +vttGas+Dl++at++ar+m+t++Gmse +g+v +++++             ++s +  +++++ev+++ ++a ++a++il+e+ ++l+lla+ Ll++et++  ++ke+l
  MMETSP1137-20121227|6818_1 245 RFGDVVGVDEAISELQDIVKYLRSPKQFTRLGGKLPKGVLLTGPPGTGKTLLARAVAGEAGVPFFYMSGSEFEEVFVGVGAKRVRELFAAAKKRAPCIVFIDEIDAIGSHRNP---KEQQAMKMTLNQLLVEMDGFQQNTGVIVLAATNFPEALDRALVRPGRFDTNVVVPLPDVRGRSQILALYAKPIPLEAGVDLETIARATPGFSGADLANLMNVAALRASHLEKKKVTMADLEYACDKIRMGAERKSAVISPENLKLTAYHEGGHALVALHTPGAQPIHKATIVPRGNTLGMVAYLPEKDQLNLTREQMLAHIDICMGGRIAEELIFGkeSVTTGASSDLQQATSMARNMITKYGMSETIGPVYHSDSQ-----------LDKLSTHSREAVEKEVRELCQKAETNARKILSEHSKDLHLLAQGLLQYETLSWTDIKEVL 674
                 79*************************************************************************************************************98...55678899****************************************************************************************************************************************************************************************************************999********************************988554...........34678888999**********************************************997 PP

>> TIGR01242  26Sp45: 26S proteasome subunit P45 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  234.2   0.1   2.2e-72   5.3e-70     120     363 ..     245     484 ..     225     485 .. 0.96

  Alignments for each domain:
  == domain 1    score: 234.2 bits;  conditional E-value: 2.2e-72
   TIGR01242 120 syediGGlekqlreireavelplkkpelfeevGieppkGvllyGppGtGktllakavaeetnatfirvvgselvkkyiGeGarlvrevfklakekapsiifideidaiaakrldsstsGdrevqrtllqllaeldGfdprgnvkviaatnrldildpallrpGrfdrlievplpdleGrleilkihtrkmklaedvdleelaklteGasGadlkaivteaGmfaireerdkvtmedflkavekv 363
                 ++ d+ G+++ + e++++v+  l+ p+ f ++G + pkGvll GppGtGktlla+ava e+   f  + gse+ + ++G Ga+ vre+f  ak++ap+i+fideidai+++r  ++   ++ ++ tl qll e+dGf+    v v+aatn ++ ld al+rpGrfd  + vplpd++Gr +il ++++ + l   vdle++a+ t G+sGadl  ++  a + a   e++kvtm+d+  a +k+
  MMETSP1137-20121227|6818_1 245 RFGDVVGVDEAISELQDIVKY-LRSPKQFTRLGGKLPKGVLLTGPPGTGKTLLARAVAGEAGVPFFYMSGSEFEEVFVGVGAKRVRELFAAAKKRAPCIVFIDEIDAIGSHRNPKE---QQAMKMTLNQLLVEMDGFQQNTGVIVLAATNFPEALDRALVRPGRFDTNVVVPLPDVRGRSQILALYAKPIPLEAGVDLETIARATPGFSGADLANLMNVAALRASHLEKKKVTMADLEYACDKI 484
                 699**************9985.9*****************************************************************************************8776...567899**********************************************************************************************************************8 PP

>> TIGR01243  CDC48: AAA family ATPase, CDC48 subfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  211.5   0.0   1.9e-65   4.6e-63     451     686 ..     245     478 ..     238     501 .. 0.85

  Alignments for each domain:
  == domain 1    score: 211.5 bits;  conditional E-value: 1.9e-65
   TIGR01243 451 kwediggleevkqelreavewplkakevfeklgirppkgvllfgppgtgktllakavatesganfiavrgpeilskwvgesekaireifrkarqaapaiifldeidaiapargadlseavtdrivnqllteldgleensdvvviaatnrpdildpallrpgrldrlilvpapdeearleifkihtrslplaedvdleelakktegytgadieavvreaalaalresvksvakekle 686
                 ++ d+ g++e+  el++ v++ l+ ++ f +lg + pkgvll gppgtgktlla+ava e+g  f  + g e    +vg   k++re+f  a++ ap+i+f+deidai  +r  ++++a+    +nqll e+dg+++n++v+v+aatn p+ ld al+rpgr+d  ++vp pd + r +i+ ++++ +pl   vdle +a+ t g++gad++ ++  aal a     k v+   le
  MMETSP1137-20121227|6818_1 245 RFGDVVGVDEAISELQDIVKY-LRSPKQFTRLGGKLPKGVLLTGPPGTGKTLLARAVAGEAGVPFFYMSGSEFEEVFVGVGAKRVRELFAAAKKRAPCIVFIDEIDAIGSHRNPKEQQAM-KMTLNQLLVEMDGFQQNTGVIVLAATNFPEALDRALVRPGRFDTNVVVPLPDVRGRSQILALYAKPIPLEAGVDLETIARATPGFSGADLANLMNVAALRASHLEKKKVTMADLE 478
                 678999999999999999987.89999999999999999999999999999999999999999999999999999999999999999999999999999999999999999988877765.5678999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999888766555555444444 PP

>> TIGR03689  pup_AAA: proteasome ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  108.5   0.1   3.1e-34   7.6e-32     181     386 ..     246     434 ..     240     483 .. 0.89

  Alignments for each domain:
  == domain 1    score: 108.5 bits;  conditional E-value: 3.1e-34
   TIGR03689 181 yadiGGldsqieqirdavelPflhkelyreydlkpPkGvllyGPPGcGktliakavanslaekvaedgeaksyflnikGPellnkyvGeterqirliferarekaaegrPvvvffdemdslfrtrGsGvssdvettvvPqllaeldGveslenviviGasnredlidPailrPGrldvkirierPdaeaaadilakyltedlPlee 386
                 + d+ G+d+ i +++d v+  +  ++ +++ + k PkGvll GPPG+Gktl+a+ava                f+ + G e+ + +vG   +++r +f+ a+++a    P +vf+de+d++   r       +  t + qll e+dG ++   viv+ a+n  + +d a++rPGr+d  + +  Pd ++ ++ila y +  +Ple+
  MMETSP1137-20121227|6818_1 246 FGDVVGVDEAISELQDIVKY-LRSPKQFTRLGGKLPKGVLLTGPPGTGKTLLARAVAGEA----------GVPFFYMSGSEFEEVFVGVGAKRVRELFAAAKKRA----PCIVFIDEIDAIGSHRNPKEQQAMKMT-LNQLLVEMDGFQQNTGVIVLAATNFPEALDRALVRPGRFDTNVVVPLPDVRGRSQILALYAK-PIPLEA 434
                 889***************96.688999*****************************9643..........34577899*********************999987....****************99988888766.68********************************************************9965.578744 PP

>> TIGR03922  T7SS_EccA: type VII secretion AAA-ATPase EccA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.2   0.1     5e-09   1.2e-06     313     431 ..     281     398 ..     251     409 .. 0.82
   2 ?   -3.4   0.0       2.4   5.7e+02     108     129 ..     653     675 ..     624     685 .. 0.68

  Alignments for each domain:
  == domain 1    score: 25.2 bits;  conditional E-value: 5e-09
   TIGR03922 313 kHlllaGPPGtGkttiArvvakiyaGlgvlrkpevrEvsRadligeyigeseaktnelidkaLgg...vlFlDEayaLvekrdgakddfGleaidtLLarlEndRdrlvvii..A.GYekdlDkl 431
                 k +ll GPPGtGkt +Ar+va   aG+          +s +++   ++g  +++  el   a  +   ++F+DE+ a+ ++r+ ++++     +++LL+ ++   ++  vi+  A  + ++lD+ 
  MMETSP1137-20121227|6818_1 281 KGVLLTGPPGTGKTLLARAVAGE-AGVPFF------YMSGSEFEEVFVGVGAKRVRELFAAAKKRapcIVFIDEIDAIGSHRNPKEQQAMKMTLNQLLVEMDGFQQNTGVIVlaAtNFPEALDRA 398
                 5689****************975.787655......5788999999************99998765558**************99999999**********987666544431121455666665 PP

  == domain 2    score: -3.4 bits;  conditional E-value: 2.4
   TIGR03922 108 rw.vrvvlyyrtqRWsdvleqlt 129
                 ++ ++++l+y t  W+d+ e l 
  MMETSP1137-20121227|6818_1 653 HLlAQGLLQYETLSWTDIKEVLA 675
                 22489999999999999877665 PP

>> TIGR00382  clpX: ATP-dependent Clp protease, ATP-binding subunit ClpX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.6   0.0   8.1e-08     2e-05     120     197 ..     283     354 ..     276     366 .. 0.82

  Alignments for each domain:
  == domain 1    score: 21.6 bits;  conditional E-value: 8.1e-08
   TIGR00382 120 illiGptGsGktllaqtlakeldvpfaiadattlteaGyvGedvenillkllqaadydvekaekGiiyideidkiark 197
                 +ll Gp G+Gktlla+++a e  vpf     + + e  +vG   + +  +l+ aa    +k    i++ideid i  +
  MMETSP1137-20121227|6818_1 283 VLLTGPPGTGKTLLARAVAGEAGVPFFYMSGSEF-EEVFVGVGAKRV-RELFAAA----KKRAPCIVFIDEIDAIGSH 354
                 89************************98877666.557999887765.5666665....567789********99754 PP

>> TIGR00390  hslU: ATP-dependent protease HslVU, ATPase subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.0   1.7e-06   0.00041      46      93 ..     279     325 ..     263     338 .. 0.86
   2 ?    3.2   0.1     0.031       7.5     247     264 ..     339     356 ..     323     381 .. 0.78

  Alignments for each domain:
  == domain 1    score: 17.2 bits;  conditional E-value: 1.7e-06
   TIGR00390  46 vPknilmiGstGvGkteiarrlaklaeaPfikveatkftevGyvGrdv 93 
                 +Pk +l+ G+ G Gkt +ar +a  a++Pf  +  + f ev +vG   
  MMETSP1137-20121227|6818_1 279 LPKGVLLTGPPGTGKTLLARAVAGEAGVPFFYMSGSEFEEV-FVGVGA 325
                 6***************************************9.777554 PP

  == domain 2    score: 3.2 bits;  conditional E-value: 0.031
   TIGR00390 247 esGiifideidkiakkge 264
                    i+fideid i  + +
  MMETSP1137-20121227|6818_1 339 APCIVFIDEIDAIGSHRN 356
                 467**********87654 PP

>> TIGR00635  ruvB: Holliday junction DNA helicase RuvB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   0.0   1.6e-07   3.9e-05      31      95 ..     281     353 ..     246     391 .. 0.79

  Alignments for each domain:
  == domain 1    score: 20.6 bits;  conditional E-value: 1.6e-07
   TIGR00635  31 dhvllyGPPGlGkttlakiiakelgvklkitsgpalek......pgDlaailtaleegd..vlfiDeihrlsk 95 
                   vll+GPPG Gkt la+ +a e gv    +sg ++e       ++ +  +++a +++   ++fiDei ++  
  MMETSP1137-20121227|6818_1 281 KGVLLTGPPGTGKTLLARAVAGEAGVPFFYMSGSEFEEvfvgvgAKRVRELFAAAKKRApcIVFIDEIDAIGS 353
                 669******************************9998633333345666666666665444999999998854 PP

>> TIGR02639  ClpA: ATP-dependent Clp protease ATP-binding subunit ClpA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0   2.7e-06   0.00065     459     526 ..     249     319 ..     244     349 .. 0.77

  Alignments for each domain:
  == domain 1    score: 15.8 bits;  conditional E-value: 2.7e-06
   TIGR02639 459 ifGqdeaiealvkaikrsraG..lke..enkPvgsflfvGptGvGktelakqLaeelgvellrfDmseymek 526
                 + G deai++l + +k+ r+   +++   + P g  l +Gp G Gkt la+++a e gv +  +  se+ e 
  MMETSP1137-20121227|6818_1 249 VVGVDEAISELQDIVKYLRSPkqFTRlgGKLPKG-VLLTGPPGTGKTLLARAVAGEAGVPFFYMSGSEFEEV 319
                 779999*999999999776641154421345666.5779*****************************9985 PP

>> TIGR02928  TIGR02928: orc1/cdc6 family replication initiation protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   0.0     2e-05    0.0049      35      61 ..     275     301 ..     246     305 .. 0.75
   2 ?   -0.5   0.0      0.39        95     122     144 ..     333     355 ..     321     397 .. 0.59
   3 ?   -2.1   0.1       1.2   2.9e+02     246     277 ..     455     486 ..     454     496 .. 0.87

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 2e-05
   TIGR02928  35 lrgsrpsnvliyGktGtGKtavtkkvl 61 
                 l g+ p+ vl+ G++GtGKt+ +++v 
  MMETSP1137-20121227|6818_1 275 LGGKLPKGVLLTGPPGTGKTLLARAVA 301
                 45999******************9986 PP

  == domain 2    score: -0.5 bits;  conditional E-value: 0.39
   TIGR02928 122 keleeredsliivLDEiDklv.kk 144
                  + ++r    i+ +DEiD +  ++
  MMETSP1137-20121227|6818_1 333 AAAKKR-APCIVFIDEIDAIGsHR 355
                 444444.4467778****995422 PP

  == domain 3    score: -2.1 bits;  conditional E-value: 1.2
   TIGR02928 246 dlLreageiAeeegsekvteehvekAqekiek 277
                 +l+ +a+  A + +++kvt  ++e A +ki +
  MMETSP1137-20121227|6818_1 455 NLMNVAALRASHLEKKKVTMADLEYACDKIRM 486
                 589999999*****************999965 PP

>> TIGR00763  lon: ATP-dependent protease La
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.0   8.7e-06    0.0021     341     434 ..     265     353 ..     257     364 .. 0.73

  Alignments for each domain:
  == domain 1    score: 14.4 bits;  conditional E-value: 8.7e-06
   TIGR00763 341 ylavkklrkklkgki...lclvGPPGVGKtSlaksiAkalnrkfvrlslGGlkDvaeikGHRrtYvGalPGkiiqglkkvktenP.lillDEiDKlgs 434
                 yl   k+  +l gk+   + l+GPPG GKt la+++A   +  f+ +s    ++          +vG    ++ + +  +k++ P ++++DEiD +gs
  MMETSP1137-20121227|6818_1 265 YLRSPKQFTRLGGKLpkgVLLTGPPGTGKTLLARAVAGEAGVPFFYMSGSEFEE---------VFVGVGAKRVRELFAAAKKRAPcIVFIDEIDAIGS 353
                 555555555555553333789************************999544433.........46777667777778888888883456888888875 PP

>> TIGR02640  gas_vesic_GvpN: gas vesicle protein GvpN
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   1.1e-05    0.0026      24      55 ..     283     314 ..     273     327 .. 0.90

  Alignments for each domain:
  == domain 1    score: 15.1 bits;  conditional E-value: 1.1e-05
   TIGR02640  24 vhlrGPaGtGktslalhvakkrdrPvvllnGd 55 
                 v l+GP GtGkt la++va + + P  ++ G 
  MMETSP1137-20121227|6818_1 283 VLLTGPPGTGKTLLARAVAGEAGVPFFYMSGS 314
                 789**************************996 PP

>> TIGR02397  dnaX_nterm: DNA polymerase III, subunit gamma and tau
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.0   0.0   7.8e-05     0.019      10      57 ..     243     301 ..     241     304 .. 0.75
   2 ?    0.8   0.1      0.21        50     216     279 ..     582     647 ..     574     683 .. 0.64

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 7.8e-05
   TIGR02397  10 PktFedliGqehvvktLknaikk...........nkiahayLfsGprGvGKTsiArilA 57 
                 Pk+F d++G +  ++ L+  +k            +k+ +  L++Gp G+GKT +Ar +A
  MMETSP1137-20121227|6818_1 243 PKRFGDVVGVDEAISELQDIVKYlrspkqftrlgGKLPKGVLLTGPPGTGKTLLARAVA 301
                 89999999998888888877763222222233336889999***************987 PP

  == domain 2    score: 0.8 bits;  conditional E-value: 0.21
   TIGR02397 216 lslldqlislskgkitlekveellglv..seekllelleailkkdleealklleellekgvdlekl 279
                  s l+q++s+ ++ it+  ++e++g v  s+++l +l ++  +   +e+ +l+++++ ++ ++ + 
  MMETSP1137-20121227|6818_1 582 SSDLQQATSMARNMITKYGMSETIGPVyhSDSQLDKLSTHSREAVEKEVRELCQKAETNARKILSE 647
                 556889999999999999999999855115566666666666666666666666665555444332 PP

>> TIGR02902  spore_lonB: ATP-dependent protease LonB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.2   0.0   4.6e-05     0.011      61     112 ..     243     306 ..     237     332 .. 0.68
   2 ?   -1.2   0.0      0.53   1.3e+02     297     335 ..     449     487 ..     436     500 .. 0.80

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 4.6e-05
   TIGR02902  61 pksfdeiiGqeeGikalk............aalcGpnpqhviiyGppGvGktaaarlvleeakk 112
                 pk f +++G +e i  l+            + l G  p+ v++ GppG Gkt  ar v  ea  
  MMETSP1137-20121227|6818_1 243 PKRFGDVVGVDEAISELQdivkylrspkqfTRLGGKLPKGVLLTGPPGTGKTLLARAVAGEAGV 306
                 7888888888888776652222222222223578999********************9988854 PP

  == domain 2    score: -1.2 bits;  conditional E-value: 0.53
   TIGR02902 297 nGreavnlvqlaaGlalnenrkkilaediewviesgqys 335
                 +G +  nl+++aa  a   ++kk+++ d+e+  ++ ++ 
  MMETSP1137-20121227|6818_1 449 SGADLANLMNVAALRASHLEKKKVTMADLEYACDKIRMG 487
                 79999*************************998876664 PP

>> TIGR02881  spore_V_K: stage V sporulation protein K
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.7   0.0   8.5e-05     0.021       8     149 ..     249     387 ..     243     404 .. 0.63

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 8.5e-05
   TIGR02881   8 lvGleevkelikeiyalilinekrkeeglkaekqvlhmifkGnPGtGkttvarllaklfkelnvlskGhlieveradlvGeyiGhtaqktrevi...kkalGGvlfideaysla..r.GGekdfGkeaidtlvkemedkreel.vlila 149
                 +vG++e  + +++i  +    ++ ++ g k       ++++G PGtGkt +ar +a    e +v     +  +  +++   ++G  a+++re+    kk    ++fide  ++   r   e+   k ++++l+ em+  +++  v++la
  MMETSP1137-20121227|6818_1 249 VVGVDEAISELQDIVKYLRSPKQFTRLGGKLP---KGVLLTGPPGTGKTLLARAVAG---EAGV----PFFYMSGSEFEEVFVGVGAKRVRELFaaaKKRAPCIVFIDEIDAIGshRnPKEQQAMKMTLNQLLVEMDGFQQNTgVIVLA 387
                 55555554444444444444444444444444...446799************9985...5555....344555555556689999999999753336677889999997766411313566677888888888888755543255555 PP

>> TIGR02903  spore_lon_C: ATP-dependent protease, Lon family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.2   0.0   4.1e-05    0.0098     150     199 ..     243     304 ..     233     323 .. 0.75

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 4.1e-05
   TIGR02903 150 pralseivGqeraikal...laklasp.........fpqhiilyGppGvGkttaarlaleea 199
                 p+ + ++vG + ai  l   +  l sp          p+ ++l GppG Gkt  ar +  ea
  MMETSP1137-20121227|6818_1 243 PKRFGDVVGVDEAISELqdiVKYLRSPkqftrlggkLPKGVLLTGPPGTGKTLLARAVAGEA 304
                 8888888888888865533244455554433333337*******************887665 PP

>> TIGR00368  TIGR00368: Mg chelatase-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.1   0.00011     0.026     214     233 ..     283     302 ..     261     307 .. 0.91

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 0.00011
   TIGR00368 214 llllGPPGsGktllakrlqg 233
                 +ll GPPG+Gktlla+ + g
  MMETSP1137-20121227|6818_1 283 VLLTGPPGTGKTLLARAVAG 302
                 899************99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (708 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       208  (0.050707); expected 82.0 (0.02)
Passed bias filter:                      189  (0.0460751); expected 82.0 (0.02)
Passed Vit filter:                        54  (0.0131643); expected 4.1 (0.001)
Passed Fwd filter:                        17  (0.00414432); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              17  [number of targets reported over threshold]
# CPU time: 0.81u 0.19s 00:00:01.00 Elapsed: 00:00:00.82
# Mc/sec: 1139.61
//
Query:       MMETSP1137-20121227|6820_1  [L=171]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (171 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       106  (0.0258411); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.13s 00:00:00.30 Elapsed: 00:00:00.32
# Mc/sec: 705.32
//
Query:       MMETSP1137-20121227|6821_1  [L=74]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (74 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        68  (0.0165773); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.20s 00:00:00.31 Elapsed: 00:00:00.31
# Mc/sec: 315.07
//
Query:       MMETSP1137-20121227|6822_1  [L=106]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (106 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        95  (0.0231594); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.12s 00:00:00.27 Elapsed: 00:00:00.27
# Mc/sec: 518.18
//
Query:       MMETSP1137-20121227|6823_1  [L=442]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (442 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        65  (0.0158459); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.17s 00:00:00.47 Elapsed: 00:00:00.57
# Mc/sec: 1005.85
//
Query:       MMETSP1137-20121227|6824_1  [L=277]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (277 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        76  (0.0185275); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.18s 00:00:00.41 Elapsed: 00:00:00.42
# Mc/sec: 870.50
//
Query:       MMETSP1137-20121227|6825_1  [L=141]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (141 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        74  (0.01804); expected 82.0 (0.02)
Passed bias filter:                       42  (0.0102389); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.13s 00:00:00.30 Elapsed: 00:00:00.28
# Mc/sec: 641.74
//
Query:       MMETSP1137-20121227|6828_1  [L=311]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (311 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        60  (0.014627); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.18s 00:00:00.42 Elapsed: 00:00:00.68
# Mc/sec: 603.66
//
Query:       MMETSP1137-20121227|6829_1  [L=151]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (151 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        59  (0.0143832); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.13s 00:00:00.31 Elapsed: 00:00:00.31
# Mc/sec: 642.91
//
Query:       MMETSP1137-20121227|6830_1  [L=390]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (390 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        62  (0.0151146); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.24s 00:00:00.41 Elapsed: 00:00:00.51
# Mc/sec: 1009.33
//
Query:       MMETSP1137-20121227|6833_1  [L=589]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   8.8e-205  678.5   0.0   1.3e-204  678.0   0.0    1.2  1  TIGR02731 phytoene_desat: phytoene desaturase
    1.5e-71  239.6   0.0    3.1e-70  235.2   0.0    2.6  1  TIGR02732 zeta_caro_desat: carotene 7,8-desaturase
      1e-58  197.5   0.0    1.4e-58  197.1   0.0    1.2  1  TIGR03467 HpnE: squalene-associated FAD-dependent desaturase
    5.1e-12   42.9   0.0    1.9e-11   41.1   0.0    1.7  2  TIGR00562 proto_IX_ox: protoporphyrinogen oxidase
    6.4e-11   39.4   0.0      1e-08   32.1   0.0    2.1  2  TIGR02734 crtI_fam: phytoene desaturase
      8e-07   26.0   0.0     0.0052   13.5   0.0    2.1  2  TIGR02730 carot_isom: carotene isomerase
      2e-06   24.9   0.0    2.9e-06   24.3   0.0    1.2  1  TIGR00031 UDP-GALP_mutase: UDP-galactopyranose mutase
    4.5e-06   23.1   0.1    7.2e-06   22.5   0.0    1.2  1  TIGR03997 mycofact_OYE_2: mycofactocin system FadH/OYE family oxidoreductase 2
    6.2e-06   23.5   1.2    9.1e-06   22.9   0.2    1.7  2  TIGR00292 TIGR00292: thiazole biosynthesis enzyme
    6.7e-06   23.0   0.1    1.1e-05   22.4   0.1    1.2  1  TIGR01317 GOGAT_sm_gam: glutamate synthase, NADH/NADPH, small subunit
    0.00011   19.0   0.1    0.00021   18.0   0.1    1.4  1  TIGR01316 gltA: glutamate synthase (NADPH), homotetrameric
    0.00012   18.8   0.2       0.05   10.1   0.2    2.1  2  TIGR01813 flavo_cyto_c: flavocytochrome c
    0.00013   18.9   0.5    0.00021   18.3   0.3    1.2  1  TIGR03197 MnmC_Cterm: tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain
    0.00018   16.9   0.0    0.00025   16.4   0.0    1.1  1  TIGR03315 Se_ygfK: putative selenate reductase, YgfK subunit
    0.00024   17.8   0.0    0.00037   17.1   0.0    1.3  1  TIGR02733 desat_CrtD: C-3',4' desaturase CrtD
    0.00025   17.6   0.1    0.00042   16.8   0.0    1.2  1  TIGR01318 gltD_gamma_fam: glutamate synthase, small subunit
    0.00041   17.1   0.3    0.00059   16.6   0.2    1.2  1  TIGR00275 TIGR00275: flavoprotein, HI0933 family
     0.0062   13.4   0.1     0.0097   12.7   0.1    1.2  1  TIGR03378 glycerol3P_GlpB: glycerol-3-phosphate dehydrogenase, anaerobic, B subunit
     0.0073   13.0   0.0      0.011   12.4   0.0    1.3  1  TIGR01988 Ubi-OHases: ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family
     0.0079   13.1   0.3      0.012   12.5   0.2    1.2  1  TIGR02352 thiamin_ThiO: glycine oxidase ThiO
     0.0086   13.6   1.2       0.02   12.4   0.5    1.7  2  TIGR02032 GG-red-SF: geranylgeranyl reductase family
  ------ inclusion threshold ------
      0.012   12.0   0.0      0.021   11.2   0.0    1.3  1  TIGR03996 mycofact_OYE_1: mycofactocin system FadH/OYE family oxidoreductase 1
      0.014   12.3   0.3      0.035   10.9   0.1    1.7  2  TIGR02023 BchP-ChlP: geranylgeranyl reductase
      0.015   12.0   0.0      0.024   11.3   0.0    1.3  1  TIGR01292 TRX_reduct: thioredoxin-disulfide reductase
      0.023   11.5   0.0      0.033   11.0   0.0    1.2  1  TIGR04046 MSMEG_0569_nitr: flavin-dependent oxidoreductase, MSMEG_0569 family
      0.029    9.9   0.2      0.043    9.4   0.2    1.1  1  TIGR01372 soxA: sarcosine oxidase, alpha subunit family
       0.03   10.9   0.4      0.058    9.9   0.3    1.3  1  TIGR01350 lipoamide_DH: dihydrolipoyl dehydrogenase
       0.04   10.9   0.1       0.06   10.3   0.1    1.2  1  TIGR01790 carotene-cycl: lycopene cyclase family protein
      0.088    9.0   0.2          3    3.9   0.1    2.0  2  TIGR02374 nitri_red_nirB: nitrite reductase [NAD(P)H], large subunit


Domain annotation for each model (and alignments):
>> TIGR02731  phytoene_desat: phytoene desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  678.0   0.0  8.9e-207  1.3e-204       2     452 ..      37     502 ..      36     503 .. 0.96

  Alignments for each domain:
  == domain 1    score: 678.0 bits;  conditional E-value: 8.9e-207
   TIGR02731   2 vaiagaglaglsaakyladaghtpivleardvlggkvaawkdedgdwyetglhiffgaypnllqllkelniedrlqwkehslifaqpdkpgelsrfdv.pdlpaplnvvlailrnndmltweekikfalgllpaivrgqkyveeldkltlsewlkkqgvpervndevfiaaskalnfidpdelsatvvltalnrflqerygsklafldgapperlcqpivdyitsrggevrlnarlkeivlnedgsvkafaladlegkesfevtadayvsalavdilklllpkpwkeleffkkleglegvpvinvhlwfdrklttvdhllfsrsellsvyadmsetckeyadpdksmlelvlapa.......kdwigrsdeeiieatlkeleklfpdelkade............kakllkskvvktprsvykatpgreklrpaqktpienfflagdytkqkylasmegavlsgklaaqai 452
                 vai g+gl+gl++akyladagh+p+vleardvlggkv+aw+dedgdw+etglhiffgaypn+++l+ el+i+drlqwk h +ifa+++ pge++ fd+ p +pap+n  lail n++mlt eek++ a  llp +v+gq++++++d+l++ e+++k g+p+r+n+evf+a++kal+fidpd+ls+tvvlta+nrfl+e +g ++afldg+ p+rlc p+ +y+++rggevrlna l  iv ++dg ++ ++l+d++      +tad yvsal+vdi+k ++pk w++++ff++ ++leg+pvin+h+w drkl+ vdhl fsrs+llsvyadms  ckeyad+++smlelv+ap        ++w+g+sdeeii+at+ el++lfp+e++ de            +a+l+k +vvk prsvy a+pgr+k+rp+q+tpi+ f lagd+t qk+l+smegavl+gklaa+ i
  MMETSP1137-20121227|6833_1  37 VAIIGGGLSGLACAKYLADAGHKPLVLEARDVLGGKVSAWQDEDGDWIETGLHIFFGAYPNMMNLFAELGIHDRLQWKVHKMIFAMQQLPGEFTTFDFiPGIPAPFNFGLAILLNQKMLTLEEKLQTAPPLLPMLVQGQSFIDAQDELSVLEFMRKYGMPDRINEEVFVAMAKALDFIDPDKLSMTVVLTAMNRFLNEDNGLQMAFLDGNQPDRLCAPMAKYVEARGGEVRLNAXLDAIVTDDDGEIQGLKLRDGS-----MITADEYVSALPVDIFKRVMPKAWQKMPFFRQCDELEGIPVINLHMWXDRKLQGVDHLCFSRSPLLSVYADMSRCCKEYADEEQSMLELVFAPCsplaggnTNWVGKSDEEIIDATMGELARLFPTEIARDErwpstlkqgpdgEARLRKFAVVKVPRSVYAAIPGRNKFRPSQETPIPRFTLAGDWTSQKFLGSMEGAVLAGKLAAEVI 502
                 89***********************************************************************************************7699*********************************************************************************************************************************************************99.....9********************************************************************************************6333333359************************99775333333333333699************************************************************987 PP

>> TIGR02732  zeta_caro_desat: carotene 7,8-desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  235.2   0.0   2.2e-72   3.1e-70       2     473 ..      37     502 ..      36     503 .. 0.88

  Alignments for each domain:
  == domain 1    score: 235.2 bits;  conditional E-value: 2.2e-72
   TIGR02732   2 vaivgaglaglatavelvdaghevelyesrsflggkvgswvdkdgnhiemglhvffgcyanlfkllkkvgaldnlllkehthlfvnkg..geikeldfrfavgapfn.glkafftteqlklvdklrnalalatspivrglvdydgalktirdldkisfaewflskggseaslkrmwdpiayalgfidcenisarcmltifalfaakteasvlrllkgspdkyltkpileyleakgtklylrhkvkeikfekssdgetrvteliiskaeekkvikadayvaacdvpgikkllpkewrkfeefdkikkleavpvatvqlrydgwvtelkdeekrkqlkeaagldnllytadadfscfadlalaspedyykegqgsllqlvltpgdp.......flkksneeivkrvdkqvkelfpssk................elkllwssvvklaqslyreapgmdlfrpdqktpianfflagsytkqdyidsmegatlsgrkaaaai 473
                 vai+g gl+gla+a  l+dagh+  + e+r  lggkv +w+d+dg+ ie glh+ffg+y n+++l+  +g +d+l+ k h  +f  +   ge  ++df   + apfn gl  ++  + l+l++kl+ a      p++  lv+ +     i + d++s  e++++ g   +  + ++  +a al fid +++s   +lt ++ f    +  ++ +l+g   + l  p+ +y+ea+g+ + l+  ++ i ++ +  g   + +l++ ++    +i+ad+yv+a  v   k+++pk w+k+ +f + ++le++pv+ + +  d            +   + +g+d l ++    +s +ad++ +  ++y  e + s+l+lv++p  p       ++ ks+eei+  +  ++ +lfp+                  e +l  ++vvk+++s+y   pg++ frp+q+tpi  f lag +t q ++ smega l+g++aa++i
  MMETSP1137-20121227|6833_1  37 VAIIGGGLSGLACAKYLADAGHKPLVLEARDVLGGKVSAWQDEDGDWIETGLHIFFGAYPNMMNLFAELGIHDRLQWKVHKMIFAMQQlpGEFTTFDFIPGIPAPFNfGLAILLNQKMLTLEEKLQTA-----PPLLPMLVQGQ---SFIDAQDELSVLEFMRKYGMPDRINEEVFVAMAKALDFIDPDKLSMTVVLTAMNRFLNEDNGLQMAFLDGNQPDRLCAPMAKYVEARGGEVRLNAXLDAIVTDDD--G--EIQGLKLRDG---SMITADEYVSALPVDIFKRVMPKAWQKMPFFRQCDELEGIPVINLHMWXD------------R---KLQGVDHLCFSRSPLLSVYADMSRCC-KEYADE-EQSMLELVFAPCSPlaggntnWVGKSDEEIIDATMGELARLFPTEIarderwpstlkqgpdgEARLRKFAVVKVPRSVYAAIPGRNKFRPSQETPIPRFTLAGDWTSQKFLGSMEGAVLAGKLAAEVI 502
                 9***********************************************************************************977444****************989****************987.....57777787654...568889**********999999999**********************************************9999************************998443..3..4689999877...58****************************************99887432............3...4469*****************99765.566655.6799****99965444444459********************9854111111111111222234566788*******************************************************998 PP

>> TIGR03467  HpnE: squalene-associated FAD-dependent desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  197.1   0.0   9.8e-61   1.4e-58       1     429 [.      37     503 ..      37     504 .. 0.87

  Alignments for each domain:
  == domain 1    score: 197.1 bits;  conditional E-value: 9.8e-61
   TIGR03467   1 vvvvGgGlAGLaAAveLaraGvrvtllEarrqlGGRarsfedgslgetiDngqHvllgaytellallarvgaedrlql..erleltfldpegresrLrlsrl.paPlhlakg.llrakglsladklalarlllalkrerl...raaadetvaewLkakgqserlierlwepllvsaLNedperasaklaakVlrdsllakreasdlllprvdLselfvepaarylesrggevrlgtrvreleasagg.iralveaaeetlaadavvlAvpperaasllpe....edlaaklaalesspIttvhlrldrevk.......lpaplvglvgglaqWlfdrgelagee.......gllavvvSaardledlereeladrivaelrrllpkv................aeakllkakvikekrAtFaatpglerlRPgartplpnlfLAGDwtatgyPATlEgAvrSGvqAAeavl 429
                 v+++GgGl+GLa+A  La+aG +  +lEar  lGG++++ +d++ +  i  g H+  gay ++++l a +g +drlq    +  +++ +  g++ +++  ++ paP+++  + ll+ k l+l++kl++a  ll +  +      a+++ +v e +++ g + r+ e+++  ++ +    dp++ s+ ++   + + +l++ +  ++ +   +  + + +p+a+y+e+rggevrl++ + ++  +++g i+ l   +++  +ad++v A+p +  ++++p+       + ++++le  p++++h++ dr+++          pl+ +   ++   +++  +  e+          +    ++ +++  ++ee++d+ + el+rl+p++                 ea+l k+ v+k  r ++aa pg +  RP ++tp+p+  LAGDwt+  +   +EgAv  G+ AAe ++
  MMETSP1137-20121227|6833_1  37 VAIIGGGLSGLACAKYLADAGHKPLVLEARDVLGGKVSAWQDEDGD-WIETGLHIFFGAYPNMMNLFAELGIHDRLQWkvHKMIFAMQQLPGEFTTFDFIPGiPAPFNFGLAiLLNQKMLTLEEKLQTAPPLLPMLVQGQsfiDAQDELSVLEFMRKYGMPDRINEEVFVAMAKALDFIDPDKLSMTVVLTAMNR-FLNEDNGLQMAFLDGNQPDRLCAPMAKYVEARGGEVRLNAXLDAIVTDDDGeIQGLKLRDGSMITADEYVSALPVDIFKRVMPKawqkMPFFRQCDELEGIPVINLHMWXDRKLQgvdhlcfSRSPLLSVYADMSRC-CKE-YADEEQsmlelvfAPCSPLAGGNTNWVGKSDEEIIDATMGELARLFPTEiarderwpstlkqgpdGEARLRKFAVVKVPRSVYAAIPGRNKFRPSQETPIPRFTLAGDWTSQKFLGSMEGAVLAGKLAAEVIA 503
                 89***********************************999999999.******************************765677888899999999**997777******8773679999*********98776665554447899*************************999888889************9975.888999999999999999***************************988776144444467888*********************988788899*********************88888887666666555444432.222.22333312222222333345688999*************************************999***************************************************************9885 PP

>> TIGR00562  proto_IX_ox: protoporphyrinogen oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.1   0.0   1.3e-13   1.9e-11       3     176 ..      35     223 ..      33     238 .. 0.82
   2 ?   -1.0   0.0      0.78   1.1e+02     263     394 ..     284     415 ..     273     433 .. 0.56

  Alignments for each domain:
  == domain 1    score: 41.1 bits;  conditional E-value: 1.3e-13
   TIGR00562   3 kkvvvvGgGisGLciayalekerpdvelvlvEakdRvGGkiy.TrkesGyllEkGprtlleskegildllkdlGleavlvsidktdkrfvlkn.......kgklvpvPs....kiselvkflLlslgkklraglmleeirkks....pgkd.eSveefvrrr.lGdevlenliepllsGiYagDvskLSlkr 176
                 k v+++GgG+sGL+ a +l+    +    ++Ea+d  GGk+   ++e+G  +E G + + +  + +++l  +lG+ + l+  +  +  f +++        + + ++P      ++ l++ ++l+l++kl+++  l  ++ ++      +d  Sv ef+r+  + d + e++  ++ + +   D++kLS+  
  MMETSP1137-20121227|6833_1  35 KSVAIIGGGLSGLACAKYLADA--GHKPLVLEARDVLGGKVSaWQDEDGDWIETGLHIFFGAYPNMMNLFAELGIHDRLQW-KVHKMIFAMQQlpgefttFDFIPGIPApfnfGLAILLNQKMLTLEEKLQTAPPLLPMLVQGqsfiDAQDeLSVLEFMRKYgMPDRINEEVFVAMAKALDFIDPDKLSMTV 223
                 78******************99..6777899**********96799**********************************9.7778888888898988886666667752222567888999999*******977766666554587566658*****9986245555566999999999999999999965 PP

  == domain 2    score: -1.0 bits;  conditional E-value: 0.78
   TIGR00562 263 etleakdGvkvetdsvvltvpakkaaklLkel..sesaskeldkiqsppvilVnlglPekdvidaelkgfgllv.srsnkkkilgvifssklfpnraPegkl...lltayiGg..atdeeivelseeeiiniVkedLkkv 394
                 + l++ dG  + +d  v + p     +++++   + +  ++ d+++  pvi+  +        d +l+g+  l  srs    + + +  s+  ++ a e +    l+ a       ++++ v +s+eeii++   +L ++
  MMETSP1137-20121227|6833_1 284 QGLKLRDGSMITADEYVSALPVDIFKRVMPKAwqKMPFFRQCDELEGIPVINLHMW------XDRKLQGVDHLCfSRSPLLSVYADM--SRCCKEYADEEQSmleLVFAPCSPlaGGNTNWVGKSDEEIIDATMGELARL 415
                 55666666666666666666666666666654213455666666666666666665......4556666655531444333333333..333333333333312233332222223577788888888888887777665 PP

>> TIGR02734  crtI_fam: phytoene desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.1   0.0   7.3e-11     1e-08       2      54 ..      38      91 ..      37     116 .. 0.82
   2 ?    5.1   0.0     0.011       1.6     219     271 ..     250     303 ..     242     318 .. 0.90

  Alignments for each domain:
  == domain 1    score: 32.1 bits;  conditional E-value: 7.3e-11
   TIGR02734  2 vViGaGlgGLAlAirLaaaGievtvlekrdkpGGRagvleed.GfrfDtGPtvi 54
                 +iG+Gl+GLA+A  La aG++  vle+rd +GG+ ++++++ G  + tG  ++
  MMETSP1137-20121227|6833_1 38 AIIGGGLSGLACAKYLADAGHKPLVLEARDVLGGKVSAWQDEdGDWIETGLHIF 91
                79*************************************986588888886655 PP

  == domain 2    score: 5.1 bits;  conditional E-value: 0.011
   TIGR02734 219 alvealaklaedlggelrlnaeveeieteg.erataveledgerleadavvsna 271
                 +l + +ak +e  gge+rlna  + i t++ +++++++l+dg+ ++ad  vs+ 
  MMETSP1137-20121227|6833_1 250 RLCAPMAKYVEARGGEVRLNAXLDAIVTDDdGEIQGLKLRDGSMITADEYVSAL 303
                 67889********************999886899**************999985 PP

>> TIGR02730  carot_isom: carotene isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   0.0   3.6e-05    0.0052       4      59 ..      38      94 ..      36     106 .. 0.82
   2 !   10.4   0.0   0.00032     0.046     232     293 ..     252     313 ..     201     344 .. 0.78

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 3.6e-05
   TIGR02730  4 ivigsgigglvtatqlaakgakvlvlekylipggs.agyferegykfdvgaslifgf 59
                 +ig g+ gl +a  la  g k lvle   + gg  + + + +g  ++ g  ++fg 
  MMETSP1137-20121227|6833_1 38 AIIGGGLSGLACAKYLADAGHKPLVLEARDVLGGKvSAWQDEDGDWIETGLHIFFGA 94
                68*************************776666651556678899999999999985 PP

  == domain 2    score: 10.4 bits;  conditional E-value: 0.00032
   TIGR02730 232 aeklvkglekaggkirykarvtkiilend.kavgvkladgekirakrivsnatrwdtfgkllk 293
                 +  ++k +e  gg++r +a +  i++++d +  g+kl dg +i a   vs a   d f+++++
  MMETSP1137-20121227|6833_1 252 CAPMAKYVEARGGEVRLNAXLDAIVTDDDgEIQGLKLRDGSMITADEYVS-ALPVDIFKRVMP 313
                 455778899***************998762666**************998.556777777665 PP

>> TIGR00031  UDP-GALP_mutase: UDP-galactopyranose mutase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.3   0.0   2.1e-08   2.9e-06       5      98 ..      38     129 ..      35     155 .. 0.85

  Alignments for each domain:
  == domain 1    score: 24.3 bits;  conditional E-value: 2.1e-08
   TIGR00031   5 iivGaGlsGivlaeilaklnkrvlvvekrnhiGGncydevdekgllvhkyGphifhtdnkkvldyisdfvelneyqhrvlklknnldltlPfdl 98 
                  i+G GlsG  +a+ la+ +++ lv+e r+ +GG +   +de+g  + + G hif     ++++   ++   ++ q +v k++  ++ +lP ++
  MMETSP1137-20121227|6833_1  38 AIIGGGLSGLACAKYLADAGHKPLVLEARDVLGGKVSAWQDEDGDWI-ETGLHIFFGAYPNMMNLFAELGIHDRLQWKVHKMIFAMQ-QLPGEF 129
                 59*********************************999999997665.67*******999999999999888888888876664433.455555 PP

>> TIGR03997  mycofact_OYE_2: mycofactocin system FadH/OYE family oxidoreductase 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.5   0.0   5.1e-08   7.2e-06     368     420 ..      23      75 ..       8      81 .. 0.85

  Alignments for each domain:
  == domain 1    score: 22.5 bits;  conditional E-value: 5.1e-08
   TIGR03997 368 keavtlkkarrrkkvlvvGgGPaGleaaataarrGhrvtllereeelGGqvkl 420
                 ++ ++l+  ++ k v ++GgG +Gl+ a+  a  Gh+ ++le  + lGG+v +
  MMETSP1137-20121227|6833_1  23 QKLASLAWQGEAKSVAIIGGGLSGLACAKYLADAGHKPLVLEARDVLGGKVSA 75 
                 456778888899**************************************975 PP

>> TIGR00292  TIGR00292: thiazole biosynthesis enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.9   0.2   6.5e-08   9.1e-06      23      59 ..      36      72 ..      20      77 .. 0.90
   2 ?   -2.6   0.0         4   5.6e+02     237     251 ..     490     504 ..     482     505 .. 0.75

  Alignments for each domain:
  == domain 1    score: 22.9 bits;  conditional E-value: 6.5e-08
   TIGR00292 23 DviivGaGpsGLtaayylakeglkvvvlerklaiGGG 59
                 v+i+G+G sGL++a+yla +g k +vle +  +GG 
  MMETSP1137-20121227|6833_1 36 SVAIIGGGLSGLACAKYLADAGHKPLVLEARDVLGGK 72
                699***************************9999985 PP

  == domain 2    score: -2.6 bits;  conditional E-value: 4
   TIGR00292 237 gmllsGkkvaelile 251
                 g +l+Gk +ae+i++
  MMETSP1137-20121227|6833_1 490 GAVLAGKLAAEVIAD 504
                 44799******9986 PP

>> TIGR01317  GOGAT_sm_gam: glutamate synthase, NADH/NADPH, small subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.4   0.1   7.5e-08   1.1e-05     143     182 ..      34      73 ..      26      76 .. 0.93

  Alignments for each domain:
  == domain 1    score: 22.4 bits;  conditional E-value: 7.5e-08
   TIGR01317 143 GkkvavvGsGPaGlaaadqlnraGhtvtvferedrvGGll 182
                  k va++G G +Gla+a+ l+ aGh+  v e  d  GG +
  MMETSP1137-20121227|6833_1  34 AKSVAIIGGGLSGLACAKYLADAGHKPLVLEARDVLGGKV 73 
                 589**********************************976 PP

>> TIGR01316  gltA: glutamate synthase (NADPH), homotetrameric
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.1   1.5e-06   0.00021     131     172 ..      32      73 ..      16      76 .. 0.89

  Alignments for each domain:
  == domain 1    score: 18.0 bits;  conditional E-value: 1.5e-06
   TIGR01316 131 stkkkvaviGaGpaGlavaselakkGhevtvfealhkpGGvl 172
                 +  k va+iG G +Gla+a+ la +Gh+  v ea +  GG +
  MMETSP1137-20121227|6833_1  32 GEAKSVAIIGGGLSGLACAKYLADAGHKPLVLEARDVLGGKV 73 
                 56789*****************************99888865 PP

>> TIGR01813  flavo_cyto_c: flavocytochrome c
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.1   0.2   0.00035      0.05       2      38 ..      37      72 ..      36      76 .. 0.94
   2 !    6.4   0.0    0.0047      0.66     133     171 ..     252     290 ..     245     303 .. 0.88

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 0.00035
   TIGR01813  2 vvvvGsGlAGlsaaleakkaglaevvvleKapviGGN 38
                v ++G Gl Gl+ a  + +ag ++ +vle  +v+GG 
  MMETSP1137-20121227|6833_1 37 VAIIGGGLSGLACAKYLADAG-HKPLVLEARDVLGGK 72
                78*******************.999**********95 PP

  == domain 2    score: 6.4 bits;  conditional E-value: 0.0047
   TIGR01813 133 vqklskkakkegvelrlnskvedlikddqgqvtGvkvke 171
                   ++ k+++ +g e+rln+    +++dd+g+++G+k ++
  MMETSP1137-20121227|6833_1 252 CAPMAKYVEARGGEVRLNAXLDAIVTDDDGEIQGLKLRD 290
                 57899999***************************9987 PP

>> TIGR03197  MnmC_Cterm: tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.3   1.5e-06   0.00021       2      39 ..      37      74 ..      36      77 .. 0.90

  Alignments for each domain:
  == domain 1    score: 18.3 bits;  conditional E-value: 1.5e-06
   TIGR03197  2 vavIGaGiAgaalalsLarrGvqvtllekdeklaqgAS 39
                va+IG+G++g+a+a+ La +G++  +le+++ l+ + S
  MMETSP1137-20121227|6833_1 37 VAIIGGGLSGLACAKYLADAGHKPLVLEARDVLGGKVS 74
                9***************************9988887666 PP

>> TIGR03315  Se_ygfK: putative selenate reductase, YgfK subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0   1.8e-06   0.00025     525     577 ..      22      74 ..      10      77 .. 0.88

  Alignments for each domain:
  == domain 1    score: 16.4 bits;  conditional E-value: 1.8e-06
   TIGR03315 525 keklekpqlksekhkvaviGaGPaGlsagyflaraGlpvtvfekkekagGvvk 577
                  +kl + + ++e++ va+iG+G +Gl+ + +la aG++  v+e ++  gG v+
  MMETSP1137-20121227|6833_1  22 SQKLASLAWQGEAKSVAIIGGGLSGLACAKYLADAGHKPLVLEARDVLGGKVS 74 
                 56666777889999********************************9999886 PP

>> TIGR02733  desat_CrtD: C-3',4' desaturase CrtD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.0   2.6e-06   0.00037       2      44 ..      35      77 ..      34      84 .. 0.93

  Alignments for each domain:
  == domain 1    score: 17.1 bits;  conditional E-value: 2.6e-06
   TIGR02733  2 ksvvviGaGiaGltaaallakrGlevtlleaaaqvGGCastfk 44
                ksv +iG+G++Gl++a  la  G +  +lea  ++GG  s+++
  MMETSP1137-20121227|6833_1 35 KSVAIIGGGLSGLACAKYLADAGHKPLVLEARDVLGGKVSAWQ 77
                799**********************************998876 PP

>> TIGR01318  gltD_gamma_fam: glutamate synthase, small subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0     3e-06   0.00042     140     179 ..      33      72 ..      13      76 .. 0.90

  Alignments for each domain:
  == domain 1    score: 16.8 bits;  conditional E-value: 3e-06
   TIGR01318 140 tgkrvaviGaGpaGlacadvlaraGvkvvvfdrypeiGGl 179
                 + k va+iG+G +Glaca  la aG k  v +  + +GG 
  MMETSP1137-20121227|6833_1  33 EAKSVAIIGGGLSGLACAKYLADAGHKPLVLEARDVLGGK 72 
                 5789**************************9999999985 PP

>> TIGR00275  TIGR00275: flavoprotein, HI0933 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.2   4.2e-06   0.00059       1      38 [.      37      74 ..      37      76 .. 0.96

  Alignments for each domain:
  == domain 1    score: 16.6 bits;  conditional E-value: 4.2e-06
   TIGR00275  1 viiiGgGaaGlmaAitaaeegakVlllEknkkigkKll 38
                v+iiGgG +Gl +A  +a +g+k l+lE+++ +g K++
  MMETSP1137-20121227|6833_1 37 VAIIGGGLSGLACAKYLADAGHKPLVLEARDVLGGKVS 74
                79*********************************996 PP

>> TIGR03378  glycerol3P_GlpB: glycerol-3-phosphate dehydrogenase, anaerobic, B subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.7   0.1   6.9e-05    0.0097       3      30 ..      37      64 ..      36      67 .. 0.91

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 6.9e-05
   TIGR03378  3 viiiGgGlaGlscalrlaeaGkktaiia 30
                v+iiGgGl+Gl+ca  la+aG+k +++ 
  MMETSP1137-20121227|6833_1 37 VAIIGGGLSGLACAKYLADAGHKPLVLE 64
                79*********************98875 PP

>> TIGR01988  Ubi-OHases: ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.4   0.0   7.8e-05     0.011       2      34 ..      37      68 ..      36     122 .. 0.87

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 7.8e-05
   TIGR01988  2 ivIvGgGlvGlalAlaLassadlkvalveakaa 34
                ++I+GgGl Gla+A  La+ +  k +++ea++ 
  MMETSP1137-20121227|6833_1 37 VAIIGGGLSGLACAKYLADAG-HKPLVLEARDV 68
                89****************666.88888888765 PP

>> TIGR02352  thiamin_ThiO: glycine oxidase ThiO
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.5   0.2   8.5e-05     0.012       1      31 [.      37      67 ..      37      76 .. 0.85

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 8.5e-05
   TIGR02352  1 vlviGgGviGlsvAveLakrghkvtllekde 31
                v++iGgG+ Gl+ A +La++ghk  +le ++
  MMETSP1137-20121227|6833_1 37 VAIIGGGLSGLACAKYLADAGHKPLVLEARD 67
                79*********************99998774 PP

>> TIGR02032  GG-red-SF: geranylgeranyl reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.4   0.5   0.00014      0.02       3      36 ..      37      70 ..      36      74 .. 0.91
   2 ?   -2.2   0.0       3.9   5.5e+02     283     297 .]     488     502 ..     464     502 .. 0.91

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 0.00014
   TIGR02032  3 vvvvGaGpaGssaAlrlakkGlrVlllekkelpr 36
                v ++G+G +G + A +la++G++ l+le ++  +
  MMETSP1137-20121227|6833_1 37 VAIIGGGLSGLACAKYLADAGHKPLVLEARDVLG 70
                679*************************998766 PP

  == domain 2    score: -2.2 bits;  conditional E-value: 3.9
   TIGR02032 283 IayamvagklAaevv 297
                 ++ a+ agklAaev+
  MMETSP1137-20121227|6833_1 488 MEGAVLAGKLAAEVI 502
                 678999*******97 PP

>> TIGR03996  mycofact_OYE_1: mycofactocin system FadH/OYE family oxidoreductase 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   0.00015     0.021     373     419 ..      35      81 ..      28      89 .. 0.90

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 0.00015
   TIGR03996 373 gdvlvvGGGpaGleaarvlavrGhrvtlaeasarlGGmvriaargdG 419
                  +v ++GGG +Gl  a+ la +Gh+  + ea   lGG v +    dG
  MMETSP1137-20121227|6833_1  35 KSVAIIGGGLSGLACAKYLADAGHKPLVLEARDVLGGKVSAWQDEDG 81 
                 57899*********************************998776665 PP

>> TIGR02023  BchP-ChlP: geranylgeranyl reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.1   0.00025     0.035       2      31 ..      36      65 ..      35      72 .. 0.92
   2 ?   -2.8   0.0       3.6   5.1e+02     264     301 ..     471     505 ..     453     512 .. 0.72

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 0.00025
   TIGR02023  2 dvlviGggpsGaaaaetLakagieviller 31
                 v++iGgg sG a a+ La ag++ ++le 
  MMETSP1137-20121227|6833_1 36 SVAIIGGGLSGLACAKYLADAGHKPLVLEA 65
                69**********************999985 PP

  == domain 2    score: -2.8 bits;  conditional E-value: 3.6
   TIGR02023 264 ervvLvGDaaGlvakasGeGiyyamksGklaaeaivea 301
                  r  L+GD        s eG   a+ +Gklaae i+++
  MMETSP1137-20121227|6833_1 471 PRFTLAGDWTSQKFLGSMEG---AVLAGKLAAEVIADR 505
                 56666677666666667777...788999999999876 PP

>> TIGR01292  TRX_reduct: thioredoxin-disulfide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   0.00017     0.024       2      37 ..      36      72 ..      35      79 .. 0.83

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 0.00017
   TIGR01292  2 dviiiGaGpaGltaaiYaaranlktlliegkea.ggq 37
                 v+iiG+G +Gl+ a Y a a+ k+l++e  +  gg+
  MMETSP1137-20121227|6833_1 36 SVAIIGGGLSGLACAKYLADAGHKPLVLEARDVlGGK 72
                589*************************987651455 PP

>> TIGR04046  MSMEG_0569_nitr: flavin-dependent oxidoreductase, MSMEG_0569 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00023     0.033       2      35 ..      36      69 ..      35      85 .. 0.81

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 0.00023
   TIGR04046  2 pvviiGaGqaGlsvsyllkkkgvdhvvlekktva 35
                +v iiG+G +Gl+ + +l  +g +++vle + v 
  MMETSP1137-20121227|6833_1 36 SVAIIGGGLSGLACAKYLADAGHKPLVLEARDVL 69
                799**************************98763 PP

>> TIGR01372  soxA: sarcosine oxidase, alpha subunit family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   0.2    0.0003     0.043     171     209 ..      37      75 ..      27      86 .. 0.90

  Alignments for each domain:
  == domain 1    score: 9.4 bits;  conditional E-value: 0.0003
   TIGR01372 171 vLvvGaGpaGLaaAraAaraGarvilvdeqaeaGGslls 209
                 v ++G+G +GLa A+  a+aG + ++++ +   GG++  
  MMETSP1137-20121227|6833_1  37 VAIIGGGLSGLACAKYLADAGHKPLVLEARDVLGGKVSA 75 
                 789********************************9865 PP

>> TIGR01350  lipoamide_DH: dihydrolipoyl dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.3   0.00041     0.058       4      37 ..      37      71 ..      33      74 .. 0.90

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 0.00041
   TIGR01350  4 vvviGgGpgGYvaAiraaqlglkvalvek.eklGG 37
                v +iGgG +G  +A   a +g k +++e  + lGG
  MMETSP1137-20121227|6833_1 37 VAIIGGGLSGLACAKYLADAGHKPLVLEArDVLGG 71
                889*************************9677888 PP

>> TIGR01790  carotene-cycl: lycopene cyclase family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.1   0.00042      0.06       2      45 ..      37      78 ..      36      93 .. 0.86

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 0.00042
   TIGR01790  2 liviGgGlAglaiAlelakpglrvqlieaapklpfnntygvwed 45
                +++iGgGl+gla A  la +g +  ++ea + l+++   ++w+d
  MMETSP1137-20121227|6833_1 37 VAIIGGGLSGLACAKYLADAGHKPLVLEARDVLGGK--VSAWQD 78
                79**************************99888875..356655 PP

>> TIGR02374  nitri_red_nirB: nitrite reductase [NAD(P)H], large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.1     0.021         3     139     171 ..      33      65 ..      10      72 .. 0.80
   2 ?    2.9   0.0     0.042         6     181     235 ..     249     302 ..     238     307 .. 0.81

  Alignments for each domain:
  == domain 1    score: 3.9 bits;  conditional E-value: 0.021
   TIGR02374 139 rtkkaaviGgGLLGLeaaraLknlGldvsviel 171
                 + k  a+iGgGL GL  a+ L + G +  v+e 
  MMETSP1137-20121227|6833_1  33 EAKSVAIIGGGLSGLACAKYLADAGHKPLVLEA 65 
                 456779***************999988777765 PP

  == domain 2    score: 2.9 bits;  conditional E-value: 0.042
   TIGR02374 181 DqtagrlLqrelekkGltvlleketveivkesvekaerlrfkDGssleadlvvla 235
                 D+  +  +++ +e +G  v l+     iv ++  ++++l+++DGs + ad  v a
  MMETSP1137-20121227|6833_1 249 DRLCA-PMAKYVEARGGEVRLNAXLDAIVTDDDGEIQGLKLRDGSMITADEYVSA 302
                 55544.357889999999***999999*****99***************977655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (589 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       136  (0.0331546); expected 82.0 (0.02)
Passed bias filter:                      136  (0.0331546); expected 82.0 (0.02)
Passed Vit filter:                        65  (0.0158459); expected 4.1 (0.001)
Passed Fwd filter:                        29  (0.00706972); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              29  [number of targets reported over threshold]
# CPU time: 0.60u 0.31s 00:00:00.90 Elapsed: 00:00:00.74
# Mc/sec: 1050.56
//
Query:       MMETSP1137-20121227|6834_1  [L=98]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (98 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        46  (0.011214); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.41
# Mc/sec: 315.49
//
Query:       MMETSP1137-20121227|6836_1  [L=468]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   2.8e-122  406.3  28.7   3.2e-122  406.1  19.9    1.0  1  TIGR00836 amt: ammonium transporter
    7.2e-89  296.2  25.4      1e-84  282.5  13.0    2.0  2  TIGR03644 marine_trans_1: probable ammonium transporter, marine subtype


Domain annotation for each model (and alignments):
>> TIGR00836  amt: ammonium transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  406.1  19.9  1.6e-125  3.2e-122       1     406 []       8     450 ..       8     450 .. 0.92

  Alignments for each domain:
  == domain 1    score: 406.1 bits;  conditional E-value: 1.6e-125
   TIGR00836   1 dtawllvaaalVflmqpGlalLeaGlvrsknvlnillknlldlavvillyvllGyslafgeeaetvngfiGtskfglkn...kvlk........esskeelpelvfflfqlvFaaiaaaivsgavaeRikfsayllfsvllltlvyppvahwvwgtgGwlal.........klgvlDFAGstvVHlvgGvagLvaalvlGpRigrf....eseaikphnvplvvlGtflLwfGWfgFNaGSal..aang.....laalaavnTtlaaaagaltallieylkeg.kptvlgaingilaglvaitagagvvepwaalviGvvagvlvllavsklkkklkiDDpldvfavHgvaGiwGlilvglfaaekvvasagtagss..........llggnakqllvqligilvilvysfvvtliillilkkvigLRvseeeEklGlDlaehgesay 406
                 dt++l+v  + Vf+mq+G+a+LeaG+vr+kn+ nillkn+ld++++ ++++++Gy+la+g+     n fiGt+++  +    +  +        ++++    + ++++f + Faa+++++vsgavaeR+++s+yl++ v++++ +yp++ahwvw++ Gwl++           g +DFAGs+vVHl+gGvagLv+  ++G R+gr+      +++++h+  l vlGtf+Lw+GW+gFN+GS+l  +  +     ++a+++++Ttl+aaa++ t+++i++l    +++v +++ng+l glv+itag++v++pw a +iG+++g++ + + +++k+kl++DDpld+favHgv+G+wG++++glf+++++    +   ++           + g+++ l++ ++++++i+++++ ++ i++ +lk+ + LRvs++ E +G+D+++hg   y
  MMETSP1137-20121227|6836_1   8 DTLFLVVLGIFVFFMQAGFAMLEAGAVRAKNTKNILLKNVLDACIGAFVWWAWGYGLAYGSG-PDPNPFIGTADVSSETqggQ--GflsiawtgSQEHPVGYDFASWFFSYGFAAASSTVVSGAVAERTQLSSYLVYTVFITGWIYPLIAHWVWAPAGWLSAfnpnkddavLGGCIDFAGSGVVHLTGGVAGLVGSAIIGARRGRYgpdgGVVEMPGHSTVLQVLGTFILWVGWYGFNPGSTLtiS--TdgdaqTMARVVMTTTLSAAASGTTTVIIDRLIGSrMWDVPMVCNGVLIGLVSITAGCAVISPWYAYIIGMLSGAFFFGSSKLVKHKLRVDDPLDAFAVHGVGGLWGMLATGLFGDPDYTRVYYGWVAEgsqaedkysgSFFGGTHVLGAAVVAVITIIAWTAFWASIVFGVLKVSGVLRVSNDVEDAGMDVSKHGGAMY 450
                 899*********************************************************87.5699*****96555443231..13344455688888999*****************************************************9999998899999887889*********************************99999*******************************653..3347889***********************9875459********************************************************************************9985544333335568899999778888***************************************************8876 PP

>> TIGR03644  marine_trans_1: probable ammonium transporter, marine subtype
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  282.5  13.0   5.1e-88     1e-84       3     342 ..       7     363 ..       6     376 .. 0.87
   2 !   18.0   0.3     1e-07   0.00021     349     401 ..     398     450 ..     390     453 .. 0.90

  Alignments for each domain:
  == domain 1    score: 282.5 bits;  conditional E-value: 5.1e-88
   TIGR03644   3 ldtflflvsgalvmwmaaGfamleaGlvrskntteiltknvalfaiaaimyllvgynlmypgdalllegil.....eafllaalesvadleagseedaayssasdfffqvvfvatamsivsGavaerlklwaflvfavvltaliyPvegswkwgg.Gll.......sel...gfsdfaGsgivhlaGaaaalagvlllGarkGkygkdgevkaipgsnlplatlGtfilwlGwfGfnGgsqlalsdvedanavakifvntnaaaaaGaiaalllakllf.gkadltmvlnGalaGlvaitaePlaPsllaatliGavgGvlvvlsivlld.klkiddpvGaisvhgvaGifGllvvpl 342
                 ldt++++v g++v++m aGfamleaG vr+knt +il knv   +i a +++  gy l+y ++    + ++     ++++++++  ++ + +gs+e+      + +ff   f+a++ ++vsGavaer +l ++lv++v +t+ iyP+ ++w w+  G+l       +++   g  dfaGsg+vhl+G++a l g  ++Gar G+yg+dg v  +pg +  l  lGtfilw+Gw+Gfn gs l++s+ +da+++a++++ t ++aaa   +++++ +l+  +  d+ mv nG l Glv+ita     s++ a +iG+++G     s +l++ kl++ddp+ a +vhgv G++G+l+  l
  MMETSP1137-20121227|6836_1   7 LDTLFLVVLGIFVFFMQAGFAMLEAGAVRAKNTKNILLKNVLDACIGAFVWWAWGYGLAYGSGP-DPNPFIgtadvSSETQGGQGFLSIAWTGSQEHPVGYDFASWFFSYGFAAASSTVVSGAVAERTQLSSYLVYTVFITGWIYPLIAHWVWAPaGWLsafnpnkDDAvlgGCIDFAGSGVVHLTGGVAGLVGSAIIGARRGRYGPDGGVVEMPGHSTVLQVLGTFILWVGWYGFNPGSTLTISTDGDAQTMARVVMTTTLSAAASGTTTVIIDRLIGsRMWDVPMVCNGVLIGLVSITAGCAVISPWYAYIIGMLSGAFFFGSSKLVKhKLRVDDPLDAFAVHGVGGLWGMLATGL 363
                 79**********************************************************7654.3333332112244445555555555555555555556788************************************************9669996655554222344789*********************************************************************************999998887777778888887762667************************************9998777666449*********************98765 PP

  == domain 2    score: 18.0 bits;  conditional E-value: 1e-07
   TIGR03644 349 fvaqligvvaifvfvfvaslivwailkavlGirvseeeeleGldlaelGleay 401
                 + a +++v++i++++ + + iv+ +lk+   +rvs++ e  G+d+++ G   y
  MMETSP1137-20121227|6836_1 398 LGAAVVAVITIIAWTAFWASIVFGVLKVSGVLRVSNDVEDAGMDVSKHGGAMY 450
                 678899**********************999***************9997777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (468 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       165  (0.0402243); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.35u 0.18s 00:00:00.53 Elapsed: 00:00:00.41
# Mc/sec: 1506.61
//
Query:       MMETSP1137-20121227|6837_1  [L=81]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (81 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       110  (0.0268162); expected 82.0 (0.02)
Passed bias filter:                       96  (0.0234032); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.17s 00:00:00.33 Elapsed: 00:00:00.28
# Mc/sec: 381.83
//
Query:       MMETSP1137-20121227|6838_1  [L=467]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   2.7e-116  385.9   0.0   3.6e-116  385.5   0.0    1.1  1  TIGR00510 lipA: lipoyl synthase
    7.7e-05   19.9   0.0    0.00011   19.4   0.0    1.2  1  TIGR00433 bioB: biotin synthase
     0.0058   13.4   0.0     0.0086   12.8   0.0    1.1  1  TIGR03910 pyrrolys_PylB: pyrrolysine biosynthesis radical SAM protein
     0.0084   13.2   0.0      0.017   12.2   0.0    1.5  1  TIGR00423 TIGR00423: radical SAM domain protein, CofH subfamily
     0.0087   12.7   0.0      0.013   12.2   0.0    1.3  1  TIGR03551 F420_cofH: 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit


Domain annotation for each model (and alignments):
>> TIGR00510  lipA: lipoyl synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  385.5   0.0  4.4e-119  3.6e-116       9     299 ..      38     335 ..      33     338 .. 0.97

  Alignments for each domain:
  == domain 1    score: 385.5 bits;  conditional E-value: 4.4e-119
   TIGR00510   9 qnkeellklPkwlkiklPkstkiekiknavkkkGlstvceeascPnlaecfn....katatflilGdictrrcrfcdvatgrkPlkPdpeepeklaeaikdlglkyvvitsvdrddledgGashlaeivkaikekaPnikievlvsdfrG..elkaldkladapldvynhnletverltkevrd.kadyrrslkllerakealPnlitksglmvGlGeteeeilqvlkdlrdhgvkvvtlGqylrPsrrhlpvkryvsPeefdeykekaeelGflyaaaGPlvrssykadelfaegvl 299
                 +n++   + P wlk+k+P + +++++k ++k   l tvc+ea+cPn++ec++     atat++++Gd+ctr+crfc+v+t++ P + +p e+e +ae i+++g++yvvitsvdrdd+ dgGash+a++v++ k k P+ +ie l++df+G   l  +  +a ++ldvy+hn+etverl ++vrd +a+y  sl++le+a++a P ++tk+++m+G Get++ei q+++d  + gv++ tlGqy+rPs+rh++v+r v+Peefd +k+++e+lGf+y+ +GPlvrssyka+e++++g l
  MMETSP1137-20121227|6838_1  38 RNRKPHVRHPDWLKVKMPGGENYTRLKRTLKASKLATVCQEARCPNIGECWGgdagTATATIMVMGDTCTRGCRFCNVKTSKSPPPLEPGEAEATAEQIASWGVGYVVITSVDRDDIADGGASHFAQVVRQTKAKRPSLLIECLTPDFNGtsGLDGVALVARSGLDVYAHNIETVERLQRTVRDhRANYAASLRVLEHARAAKPGVVTKTSIMLGCGETHDEIRQAMRDSVQAGVEIFTLGQYMRPSKRHMQVTRMVPPEEFDMWKAEGEALGFKYVFSGPLVRSSYKAGEAYIKGFL 335
                 5778889********************************************9999899********************************************************************************************655788999************************99***********************************************************************************************************999865 PP

>> TIGR00433  bioB: biotin synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.0   1.4e-07   0.00011      35     203 ..     101     273 ..      66     300 .. 0.74

  Alignments for each domain:
  == domain 1    score: 19.4 bits;  conditional E-value: 1.4e-07
   TIGR00433  35 aksGkCpedCkyCaQsahykteiekykllseeevleeakkakeegakrfclvasgrel.kekelekvleaveeikeel..glevcas...lGllseeqakkLkeagvdrynhNletsesyyeeiitth.tyedrletikavrka..glevCsGgiiGlgEsledrielalelaeleve 203
                 +   +C+  C++C      kt+ +  + l+  e  ++a++ ++ g+  + + +  r+   +   ++ +++v++ k++    l  c++    G+   + ++ ++++g+d y hN+et e+  +++ + + +y   l+ ++++r+a  g+   + +++G gE+++++ + + +  + +ve
  MMETSP1137-20121227|6838_1 101 VMGDTCTRGCRFCNV----KTSKS-PPPLEPGEAEATAEQIASWGVGYVVITSVDRDDiADGGASHFAQVVRQTKAKRpsLLIECLTpdfNGTSGLDGVALVARSGLDVYAHNIETVERLQRTVRDHRaNYAASLRVLEHARAAkpGVVTKTSIMLGCGETHDEIRQAMRDSVQAGVE 273
                 556789999***964....44433.455678889999999999**987766655554337777888888888888876424445766343588888899999**********************9987469*********998744677778999******99987766665555555 PP

>> TIGR03910  pyrrolys_PylB: pyrrolysine biosynthesis radical SAM protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.8   0.0     1e-05    0.0086      65     225 ..     105     267 ..      96     281 .. 0.79

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 1e-05
   TIGR03910  65 yckndcafcyyrksneaieryrktreeikeiaraladsgvhlidltmGedPlyfedpegferllelvrkvkeetglPv..misP...GvvdnevlkklkeaGadfyalyqetydr..elyeklrvgqsfderlaskrlakklGylieeGlltgvgddiedivkslrel 225
                  c   c+fc  + s        ++  e  ++a ++a  gv  + +t   d    +d+ g  +++++vr+ k +    +   ++P   G    + + +++ +G d ya   et +r  +  +  r +     r+ ++  a k G++    ++ g g+++++i +++r  
  MMETSP1137-20121227|6838_1 105 TCTRGCRFCNVKTSKS---PPPLEPGEAEATAEQIASWGVGYVVITSV-DRDDIADG-GASHFAQVVRQTKAKRPSLLieCLTPdfnGTSGLDGVALVARSGLDVYAHNIETVERlqRTVRDHRANYAASLRVLEHARAAKPGVVTKTSIMLGCGETHDEIRQAMRDS 267
                 6999999999988877...667889999999*********99988865.55556777.89********99876543331246773334444556678999************9872245566677777888999999999*********************9999865 PP

>> TIGR00423  TIGR00423: radical SAM domain protein, CofH subfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.2   0.0     2e-05     0.017      12      92 ..     103     183 ..      97     266 .. 0.91

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 2e-05
   TIGR00423  12 tniCvekCkfCaFkarekdkdaYllsleeilekvkeavekGatevliqgglnPeldl...eyyeelleaikeefpevhlhalsa 92 
                  + C++ C+fC  k ++    +  l+  e    +++    G+  v+i +    ++     +++++++++ k++ p++ ++ l++
  MMETSP1137-20121227|6838_1 103 GDTCTRGCRFCNVKTSKS---PPPLEPGEAEATAEQIASWGVGYVVITSVDRDDIADggaSHFAQVVRQTKAKRPSLLIECLTP 183
                 588*********999886...889*************************999887544449********************998 PP

>> TIGR03551  F420_cofH: 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.2   0.0   1.5e-05     0.013      41     126 ..      98     183 ..      58     265 .. 0.82

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 1.5e-05
   TIGR03551  41 rninftnvCvtkCkFCafrkektdaeayklsleevaekaaeakkagatevciqgGlhpeld...leayleilkavkeevpeihihafsP 126
                 + + + ++C+ +C+FC  +++k+   +  l+  e    a++ ++ g+  v i +    ++     +++++++++ k++ p++ i +++P
  MMETSP1137-20121227|6838_1  98 TIMVMGDTCTRGCRFCNVKTSKS---PPPLEPGEAEATAEQIASWGVGYVVITSVDRDDIAdggASHFAQVVRQTKAKRPSLLIECLTP 183
                 3455789**********999998...888999999999999999999999999877776642226788999999999999999999888 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (467 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       163  (0.0397367); expected 82.0 (0.02)
Passed bias filter:                      137  (0.0333983); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.42u 0.17s 00:00:00.59 Elapsed: 00:00:00.37
# Mc/sec: 1665.92
//
Query:       MMETSP1137-20121227|6839_1  [L=206]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (206 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       179  (0.0436373); expected 82.0 (0.02)
Passed bias filter:                      144  (0.0351048); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.18s 00:00:00.40 Elapsed: 00:00:00.37
# Mc/sec: 734.86
//
Query:       MMETSP1137-20121227|6840_1  [L=255]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (255 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       138  (0.0336421); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.15s 00:00:00.38 Elapsed: 00:00:00.34
# Mc/sec: 989.92
//
Query:       MMETSP1137-20121227|6841_1  [L=382]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (382 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        67  (0.0163335); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.16s 00:00:00.46 Elapsed: 00:00:00.32
# Mc/sec: 1575.62
//
Query:       MMETSP1137-20121227|6843_1  [L=179]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (179 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        25  (0.00609459); expected 82.0 (0.02)
Passed bias filter:                       23  (0.00560702); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.12s 00:00:00.28 Elapsed: 00:00:00.28
# Mc/sec: 843.79
//
Query:       MMETSP1137-20121227|6844_1  [L=327]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (327 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        95  (0.0231594); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.17s 00:00:00.43 Elapsed: 00:00:00.32
# Mc/sec: 1348.76
//
Query:       MMETSP1137-20121227|6845_1  [L=500]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (500 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        88  (0.0214529); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.17s 00:00:00.52 Elapsed: 00:00:00.37
# Mc/sec: 1783.64
//
Query:       MMETSP1137-20121227|6846_1  [L=349]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.019   12.8  10.6       0.03   12.1   7.3    1.3  1  TIGR03499 FlhF: flagellar biosynthesis protein FlhF
        1.5    5.4   8.7          2    5.0   6.0    1.1  1  TIGR03794 NHLM_micro_HlyD: NHLM bacteriocin system secretion protein
        1.5    6.9  17.6        1.3    7.1   2.8    2.6  2  TIGR03495 phage_LysB: phage lysis regulatory protein, LysB family
        1.7    6.4   7.9        1.1    7.0   0.1    2.4  2  TIGR00865 bcl-2: apoptosis regulator


Domain annotation for each model (and alignments):
>> TIGR03499  FlhF: flagellar biosynthesis protein FlhF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   7.3   2.9e-05      0.03      66     190 ..     188     314 ..     145     324 .. 0.65

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 2.9e-05
   TIGR03499  66 akkaleeaepkklskaeekeekekeaeekaaeaaqeaekkleeae.............eelrkelkalkellekqlselaleeedperakllkklleagvseelarelleklke.kedaeeareklreaLekklsvkke 190
                 a+k  +e+  ++ +++ e+++++ eae + +++                          +lr e+++lk++l++  + ++  +e+ e+  ++++ l+++  +   ++++e+l+   +++e+ r+ ++e L++ +s   +
  MMETSP1137-20121227|6846_1 188 AQKSSSERHYAPMAST-ERAKRSGEAEAAIEAQ-----------WeqaegklrdaqdnTALRGEIEQLKATLKHARKDAKYLRERMEQMAAENRVLRRDPRKGKRDAVIEQLEVeLQRKEQERADMEESLSNAFSAVIK 314
                 1111111111111222.2222222222222222...........0222233445557899*****************99889999999999999999999999999999999988888999999999999998865544 PP

>> TIGR03794  NHLM_micro_HlyD: NHLM bacteriocin system secretion protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   6.0     0.002         2      94     190 ..     216     305 ..     188     340 .. 0.60

  Alignments for each domain:
  == domain 1    score: 5.0 bits;  conditional E-value: 0.002
   TIGR03794  94 lrerlqearekLtqLqeqlekvrnfqvrekearekkflkskeaLeetigklreeeaaLsqevakqrqllsrklaklkrarillqqarkeqekrdead 190
                  +++ ++a++kL   q++     + ++++ +a  k+  k  ++L+e++ ++ +e+ +L +   k ++    +     ++++ lq++++e++  +e +
  MMETSP1137-20121227|6846_1 216 IEAQWEQAEGKLRDAQDNTA--LRGEIEQLKATLKHARKDAKYLRERMEQMAAENRVLRRDPRKGKRDAVIE-----QLEVELQRKEQERADMEESL 305
                 45566666667666555443..34455667777777777777888888888777777777666655443333.....33333333333333333222 PP

>> TIGR03495  phage_LysB: phage lysis regulatory protein, LysB family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   5.7     0.019        19      24      94 ..     216     271 ..     186     277 .. 0.54
   2 ?    7.1   2.8    0.0013       1.3      40      90 ..     275     326 ..     265     332 .. 0.78

  Alignments for each domain:
  == domain 1    score: 3.4 bits;  conditional E-value: 0.019
   TIGR03495  24 araslekaekalkaqqaelekkanqleallaeakrneeaqaqLrqqlaqaeallaqrekrierLlreneel 94 
                  +a+ e+ae +l+ + +++++  + +e+l+a++k+ +++ + Lr+ ++q++a              en  l
  MMETSP1137-20121227|6846_1 216 IEAQWEQAEGKLRDA-QDNTALRGEIEQLKATLKHARKDAKYLRERMEQMAA--------------ENRVL 271
                 223333333333332.334445555666666666666666666666555554..............44444 PP

  == domain 2    score: 7.1 bits;  conditional E-value: 0.0013
   TIGR03495  40 aelekkanqleallaeakrneeaqaqLrqqlaqa.eallaqrekrierLlre 90 
                     k+++++e+l+ e++r+e+++a+++++l++a +a  ++ + r++ L  e
  MMETSP1137-20121227|6846_1 275 PRKGKRDAVIEQLEVELQRKEQERADMEESLSNAfSAVIKELQARVTGLTAE 326
                 5567899***********************9987356667777788877776 PP

>> TIGR00865  bcl-2: apoptosis regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   2.7     0.083        85      36     107 ..     191     264 ..     140     274 .. 0.65
   2 ?    7.0   0.1    0.0011       1.1       5      55 ..     279     329 ..     275     340 .. 0.89

  Alignments for each domain:
  == domain 1    score: 0.8 bits;  conditional E-value: 0.083
   TIGR00865  36 llleaaaqdragratseaas.egaaeaivpkkvkeaLrragdelerRyrrafseltsqlhitprta...resfekV 107
                  + e++ +  a+  +++++  ++aa +++ ++ +  Lr+a d+  +  r ++++l + l+   ++a   re++e+ 
  MMETSP1137-20121227|6846_1 191 SSSERHYAPMASTERAKRSGeAEAAIEAQWEQAEGKLRDAQDNTAL--RGEIEQLKATLKHARKDAkylRERMEQM 264
                 3333333344444444444445666677778888899999999999..5666777777666655441113444444 PP

  == domain 2    score: 7.0 bits;  conditional E-value: 0.0011
   TIGR00865   5 nrelvlkfisyklsqrggswsaseelakngallleaaaqdragratseaas 55 
                 +r+ v++ ++ +l++++++++++ee+ +n+  ++ ++ q+r+ ++t+e+  
  MMETSP1137-20121227|6846_1 279 KRDAVIEQLEVELQRKEQERADMEESLSNAFSAVIKELQARVTGLTAERDR 329
                 699***************************************999998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (349 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       234  (0.0570453); expected 82.0 (0.02)
Passed bias filter:                       99  (0.0241346); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.33u 0.12s 00:00:00.45 Elapsed: 00:00:00.44
# Mc/sec: 1046.91
//
Query:       MMETSP1137-20121227|6847_1  [L=206]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.017   11.7   0.6      0.019   11.5   0.4    1.1  1  TIGR00437 feoB: ferrous iron transport protein B
       0.67    6.1  14.5       0.84    5.8  10.0    1.0  1  TIGR02442 Cob-chelat-sub: cobaltochelatase subunit
        1.6    5.1  14.0          2    4.8   9.7    1.1  1  TIGR01651 CobT: cobaltochelatase, CobT subunit
        4.6    4.1  14.9        5.4    3.9  10.3    1.0  1  TIGR01347 sucB: dihydrolipoyllysine-residue succinyltransferase, E2 component of oxoglutarate dehydrogenase (succinyl-transferring) complex


Domain annotation for each model (and alignments):
>> TIGR00437  feoB: ferrous iron transport protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.4   1.8e-05     0.019     132     257 ..       5     152 ..       3     200 .. 0.48

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 1.8e-05
   TIGR00437 132 vvplsatkgrgieelkkaide......................ekaiklvekkkraieilkeaeslaevkeklkelkqklkkglevleglleeraleiekiekelaevvkkesesklsateiadeekvlveksigtkvld..rflgllii 257
                 vvp+sa +++g e+  +a +                       e+ ++ + ++ + +e +k++++++++k+  ke     k++  ++++++  +  ++++ eke+a vv++ +  kl ++ + +    +++++++ + l+  r  gl ++
  MMETSP1137-20121227|6847_1   5 VVPTSAGRKKGKEADGEAEKMlslkeevkdvpnddeedgeeseEEGEEEEGEELEGEEATKKTKKTKKAKKAKKEA-AATKTEAGAIKTDAATTKNKAAAPEKEAAPVVTSAEAAKLADEDLQRRIAEQEKEHLKLR-LKaqRNQGLAML 152
                 8999999999988665544434556666667776666665444222222222222222222222222222211111.222333333344444444444444455555555555544444444443322222222222.222333333322 PP

>> TIGR02442  Cob-chelat-sub: cobaltochelatase subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8  10.0   0.00082      0.84     290     469 ..      12     144 ..       6     157 .. 0.29

  Alignments for each domain:
  == domain 1    score: 5.8 bits;  conditional E-value: 0.00082
   TIGR02442 290 rrevteedvreaaeLvlkhRrrrkpfeeeqekeekkleekkeeakpdeekedeseekekeeskkqeeeepgkddekeedekeeaeeeaesaeevalepagk.ifrvkllavskarargasGrrsktrsdkrgryvkaernreeaddlavdAtlraaalrqkarr.kavaveeedlrekvreg 469
                 r++ +e+d ++   L lk  +++ p ++e                                             e+ e+++ee eee+   ee + e+a k + ++k+ + +k++a     ++ ++++d+  +  ka ++++ea    v  +  aa l++++ + +  + e+e+l+ +++++
  MMETSP1137-20121227|6847_1  12 RKKGKEADGEAEKMLSLKEEVKDVPNDDE---------------------------------------------EDGEESEEEGEEEEG--EELEGEEATKkTKKTKKAKKAKKEAAATKTEAGAIKTDAATTKNKAAAPEKEAAP--VVTSAEAAKLADEDLQrRIAEQEKEHLKLRLKAQ 144
                 33344444444444444444444444443.............................................333222222222222..1111111111011111111111111111111111122222222222222212222..2222222222222222123333444444444443 PP

>> TIGR01651  CobT: cobaltochelatase, CobT subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   9.7    0.0019         2     198     273 ..      27     102 ..      16     158 .. 0.48

  Alignments for each domain:
  == domain 1    score: 4.8 bits;  conditional E-value: 0.0019
   TIGR01651 198 elaeelgddeesedeedtdddqp.redeqeeegeeeeegdeasaaeeaeaaeeeeesgeeeaaeaddddlsdedded 273
                  l ee+ d  +++deed+++ +   e+e+ ee e+ee+ +++ ++++a+ a++e   +++ea  ++ d  + ++ + 
  MMETSP1137-20121227|6847_1  27 SLKEEVKDV-PNDDEEDGEESEEeGEEEEGEELEGEEATKKTKKTKKAKKAKKEAAATKTEAGAIKTDAATTKNKAA 102
                 445555443.2333333333332023333444455555555555555555555555555555444444433322221 PP

>> TIGR01347  sucB: dihydrolipoyllysine-residue succinyltransferase, E2 component of oxoglutarate dehydrogenase (succinyl-transferring) complex
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9  10.3    0.0053       5.4      69     192 ..      30     142 ..       4     154 .. 0.31

  Alignments for each domain:
  == domain 1    score: 3.9 bits;  conditional E-value: 0.0053
   TIGR01347  69 evlaeleessaaaeaasekskeekeekaaakaekakeaaekkkalspaarklakeegidleavektkktgrvtkedivkkeekkasaakeaaakaakaaenaatrseeRvkmtRlrqriaerLl 192
                 e++  + ++++++ ++se++ ee+e ++ +      e+a+kk++ ++ a+k  ke++  + ++   k++ + tk+ +++ e++ a++  ++a     +a++ a+   +R      ++++  rL+
  MMETSP1137-20121227|6847_1  30 EEVKDVPNDDEEDGEESEEEGEEEEGEELEG-----EEATKKTKKTKKAKKAKKEAAATKTEAGAIKTDAATTKNKAAAPEKE-AAPVVTSA-----EAAKLADEDLQRRIAEQEKEHLKLRLK 142
                 2222222222222222222222222222222.....22222222222222222222222222222222222222222222222.11111111.....111112222222223333333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (206 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       445  (0.108484); expected 82.0 (0.02)
Passed bias filter:                      188  (0.0458313); expected 82.0 (0.02)
Passed Vit filter:                        36  (0.00877621); expected 4.1 (0.001)
Passed Fwd filter:                         9  (0.00219405); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.35u 0.19s 00:00:00.54 Elapsed: 00:00:00.39
# Mc/sec: 697.17
//
Query:       MMETSP1137-20121227|6848_1  [L=383]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (383 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        61  (0.0148708); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.16s 00:00:00.44 Elapsed: 00:00:00.38
# Mc/sec: 1330.31
//
Query:       MMETSP1137-20121227|6849_1  [L=120]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (120 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        75  (0.0182838); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.15s 00:00:00.30 Elapsed: 00:00:00.42
# Mc/sec: 377.11
//
Query:       MMETSP1137-20121227|6850_1  [L=770]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.5e-17   61.6   2.2    2.8e-17   60.7   1.5    1.4  1  TIGR02858 spore_III_AA: stage III sporulation protein AA
    3.4e-12   44.1   1.0    4.9e-12   43.6   0.1    1.6  2  TIGR01388 rnd: ribonuclease D
     0.0019   15.1   0.2     0.0038   14.1   0.1    1.4  1  TIGR02788 VirB11: P-type DNA transfer ATPase VirB11
     0.0021   14.5   0.0     0.0033   13.9   0.0    1.2  1  TIGR00764 lon_rel: putative ATP-dependent protease
  ------ inclusion threshold ------
       0.01   11.6   0.0       0.02   10.6   0.0    1.4  1  TIGR01448 recD_rel: helicase, RecD/TraA family
      0.013   13.0   0.1      0.025   12.1   0.0    1.3  1  TIGR01189 ccmA: heme ABC exporter, ATP-binding protein CcmA
      0.014   12.8   0.0      0.027   11.8   0.0    1.5  1  TIGR03420 DnaA_homol_Hda: DnaA regulatory inactivator Hda
      0.015   10.7   0.0      0.019   10.3   0.0    1.1  1  TIGR00956 3a01205: pleiotropic drug resistance family protein
      0.015   12.8   0.9      0.026   12.1   0.1    1.7  2  TIGR03771 anch_rpt_ABC: anchored repeat-type ABC transporter, ATP-binding subunit
       0.02   12.2   0.0      0.037   11.3   0.0    1.4  1  TIGR03015 pepcterm_ATPase: putative secretion ATPase, PEP-CTERM locus subfamily


Domain annotation for each model (and alignments):
>> TIGR02858  spore_III_AA: stage III sporulation protein AA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.7   1.5   6.9e-20   2.8e-17      67     246 ..     510     679 ..     466     687 .. 0.84

  Alignments for each domain:
  == domain 1    score: 60.7 bits;  conditional E-value: 6.9e-20
   TIGR02858  67 GlaGkvvledkkvktiknvaslniriarevlgaaeklleylvknnrvlntliisPPqsGkttllrdlaralstGisklglkglkvgivderseiaacvkGvPqldvGlrtdvldaC..pkaeGlmllirslsPdvivvdeiGreedveallealnaGvsviatahgkdledlkkrpvlkell 246
                 G+ G         +  +++a+l ir+ r v+  a+ ++++l   ++  ++l+++ P sGktt++r  a  l++           + i+d   ei +    +P + +G    ++      ++  ++  ++  +P+v+v+deiGr+++v+a  ++ + Gv ++a+ahg+ l dl   p l+ l+
  MMETSP1137-20121227|6850_1 510 GMDGTLHRISAIYNRERKIAGLTIRLGRSVAHNADMIVDSLR--GTNRSVLVLGEPGSGKTTIIRAAAALLAEH--------HTTIIIDTSNEIGGD-GTIPHRCIGHARRMMVPSldDQSAVMVECVQNHTPHVMVIDEIGRQQEVDAARTVKRRGVRMVASAHGT-LRDLIANPELNGLV 679
                 555555544444556699***********************8..666789****************99999984........568899*99999875.67*******75555544400455566668**************************************95.89999999998886 PP

>> TIGR01388  rnd: ribonuclease D
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   0.0       2.9   1.2e+03     279     311 ..      26      61 ..      24      92 .. 0.54
   2 !   43.6   0.1   1.2e-14   4.9e-12      36     165 ..     195     345 ..     168     366 .. 0.77

  Alignments for each domain:
  == domain 1    score: -3.8 bits;  conditional E-value: 2.9
   TIGR01388 279 lalPedelpkalkellespgakal...lkllkklvk 311
                    P++  p++ + ++  p+++ +   +++lk+   
  MMETSP1137-20121227|6850_1  26 TYYPTARDPSVALTMMTAPEQSYVdrlIETLKTSGS 61 
                 556777778888877777765543000333333332 PP

  == domain 2    score: 43.6 bits;  conditional E-value: 1.2e-14
   TIGR01388  36 klgLiqva..dgeelaliDPlvi...idlspllelladesvvKvlHaaseDlevfknlfgvlP.kPlfDTqiaaallGlgesvgydklV......kevleveld.KsesrtD........WlaRPLtdkqleYAaaDVtyLlelyekLser 165
                 +l+L+qva  +++++ + D + +      s+l +ll+de+ vK++H    D+ ++ ++ gv+  k l+DTq++a ++     vg + +       ++ ++ e++ K ++ +D        W +RPL+ + l+YAa D   Ll+ y+ L+e 
  MMETSP1137-20121227|6850_1 195 NLSLVQVAtlSPKRVFVFDCVKLsavAVCSALNQLLRDERCVKLFHDLHMDVLALSKIGGVTEmKGLLDTQLVAEYIWAEPMVGLNDMLnrldlpQNPTKLEMKaKMNRASDghqdsnnlWERRPLSSADLRYAALDAALLLDAYKPLREL 345
                 599***984458999999*98763245679******************************996379********9887777777766661111115567777754666666666778888**************************99874 PP

>> TIGR02788  VirB11: P-type DNA transfer ATPase VirB11
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.1   9.2e-06    0.0038     144     183 ..     554     593 ..     542     599 .. 0.93

  Alignments for each domain:
  == domain 1    score: 14.1 bits;  conditional E-value: 9.2e-06
   TIGR02788 144 kkniiisGgtgsgKTTflkalvkliPkeeRlitiedteEl 183
                 ++++++ G +gsgKTT+++a   l+ +++  i i+ ++E+
  MMETSP1137-20121227|6850_1 554 NRSVLVLGEPGSGKTTIIRAAAALLAEHHTTIIIDTSNEI 593
                 5789******************************999997 PP

>> TIGR00764  lon_rel: putative ATP-dependent protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.0   8.1e-06    0.0033      29      67 ..     546     584 ..     537     609 .. 0.82

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 8.1e-06
   TIGR00764  29 vikkaakqkrnvlliGePGvGksmlakamaellpkeele 67 
                 ++ +     r vl++GePG Gk+ + +a a ll++++ +
  MMETSP1137-20121227|6850_1 546 IVDSLRGTNRSVLVLGEPGSGKTTIIRAAAALLAEHHTT 584
                 455555678************************987655 PP

>> TIGR01448  recD_rel: helicase, RecD/TraA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   4.9e-05      0.02     338     367 ..     554     583 ..     516     591 .. 0.83

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 4.9e-05
   TIGR01448 338 dkvviltGGPGtGKtTvtkaiielaeeleg 367
                 ++ v++ G PG GKtT+++a ++l +e ++
  MMETSP1137-20121227|6850_1 554 NRSVLVLGEPGSGKTTIIRAAAALLAEHHT 583
                 5667778*****************999883 PP

>> TIGR01189  ccmA: heme ABC exporter, ATP-binding protein CcmA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0     6e-05     0.025      28      63 ..     556     591 ..     538     611 .. 0.81

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 6e-05
   TIGR01189  28 alvveGpnGiGKttLLRilaGLlkpesGevelndke 63 
                  + v G+ G+GKtt++R  a Ll  ++ ++ ++ ++
  MMETSP1137-20121227|6850_1 556 SVLVLGEPGSGKTTIIRAAAALLAEHHTTIIIDTSN 591
                 68899************************9999544 PP

>> TIGR03420  DnaA_homol_Hda: DnaA regulatory inactivator Hda
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   6.6e-05     0.027      35      76 ..     551     591 ..     536     629 .. 0.79

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 6.6e-05
   TIGR03420  35 akaerllylwGesgsGksHLLqAacaaaeeagksaiylplke 76 
                 + ++r++ + Ge+gsGk+ +++Aa+a ++e+ +++i ++ ++
  MMETSP1137-20121227|6850_1 551 RGTNRSVLVLGEPGSGKTTIIRAAAALLAEH-HTTIIIDTSN 591
                 4568999*******************99888.5666667655 PP

>> TIGR00956  3a01205: pleiotropic drug resistance family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   4.7e-05     0.019      80     116 ..     547     583 ..     488     618 .. 0.83

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 4.7e-05
   TIGR00956  80 vdglikpgelvvvLGrPgsGcstlLksiasktegfkk 116
                 vd+l  + + v+vLG+PgsG++t++++ a+ + ++++
  MMETSP1137-20121227|6850_1 547 VDSLRGTNRSVLVLGEPGSGKTTIIRAAAALLAEHHT 583
                 45566677889****************9998877765 PP

>> TIGR03771  anch_rpt_ABC: anchored repeat-type ABC transporter, ATP-binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.9   0.0       4.9     2e+03     142     173 ..      39      70 ..      37      72 .. 0.82
   2 ?   12.1   0.1   6.2e-05     0.026      10      46 ..     558     594 ..     552     607 .. 0.83

  Alignments for each domain:
  == domain 1    score: -3.9 bits;  conditional E-value: 4.9
   TIGR03771 142 tGldlpsqellvelfeelagegtailmtthdl 173
                 t +  p q  +  l+e+l + g+a+ m+   l
  MMETSP1137-20121227|6850_1  39 TMMTAPEQSYVDRLIETLKTSGSAMYMAQLGL 70 
                 67888999999999999999999999986555 PP

  == domain 2    score: 12.1 bits;  conditional E-value: 6.2e-05
   TIGR03771  10 gllGpnGaGkttllrailglikvakGsvkvagkssrk 46 
                  +lG  G+Gktt++ra  +l+++++ ++ +++ +   
  MMETSP1137-20121227|6850_1 558 LVLGEPGSGKTTIIRAAAALLAEHHTTIIIDTSNEIG 594
                 57999************************99865444 PP

>> TIGR03015  pepcterm_ATPase: putative secretion ATPase, PEP-CTERM locus subfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   8.9e-05     0.037      42     132 ..     553     639 ..     538     672 .. 0.75

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 8.9e-05
   TIGR03015  42 reGfilitGevGaGkttlvrnllkkleaekvvlaklvntkvdaedllrmvaadfGletegrdkvallreleeflieqaaegkrallvvdea 132
                 ++  +l+ Ge G+Gktt++r     l ++++++    + ++  + ++        + ++ r  v  l +  + ++e++++ +  ++v+de 
  MMETSP1137-20121227|6850_1 553 TNRSVLVLGEPGSGKTTIIRAAAALLAEHHTTIIIDTSNEIGGDGTIPHR----CIGHARRMMVPSLDDQSAVMVECVQNHTPHVMVIDEI 639
                 5566899*************998888877766644455556666665432....3456667777778888888888888888888888885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (770 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       283  (0.0689907); expected 82.0 (0.02)
Passed bias filter:                      220  (0.0536324); expected 82.0 (0.02)
Passed Vit filter:                        71  (0.0173086); expected 4.1 (0.001)
Passed Fwd filter:                        10  (0.00243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.80u 0.17s 00:00:00.97 Elapsed: 00:00:00.61
# Mc/sec: 1666.09
//
Query:       MMETSP1137-20121227|6851_1  [L=531]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (531 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        74  (0.01804); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.17s 00:00:00.52 Elapsed: 00:00:00.46
# Mc/sec: 1523.61
//
Query:       MMETSP1137-20121227|6853_1  [L=253]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (253 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        91  (0.0221843); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.15s 00:00:00.36 Elapsed: 00:00:00.36
# Mc/sec: 927.59
//
Query:       MMETSP1137-20121227|6854_1  [L=233]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (233 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        63  (0.0153584); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.14s 00:00:00.35 Elapsed: 00:00:00.36
# Mc/sec: 854.26
//
Query:       MMETSP1137-20121227|6855_1  [L=423]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     2e-163  541.8   0.0   2.2e-163  541.7   0.0    1.0  1  TIGR03542 DAPAT_plant: LL-diaminopimelate aminotransferase
    3.4e-54  182.1   0.0    4.6e-54  181.6   0.0    1.1  1  TIGR03540 DapC_direct: LL-diaminopimelate aminotransferase
    1.5e-23   81.1   0.0      2e-23   80.7   0.0    1.2  1  TIGR03537 DapC: succinyldiaminopimelate transaminase
    1.7e-22   77.6   0.0    2.7e-22   76.9   0.0    1.2  1  TIGR01141 hisC: histidinol-phosphate transaminase
      2e-18   64.4   0.0    5.4e-17   59.7   0.0    2.1  1  TIGR03539 DapC_actino: succinyldiaminopimelate transaminase
    3.9e-18   63.4   0.0    1.1e-17   61.9   0.0    1.6  1  TIGR01265 tyr_nico_aTase: tyrosine/nicotianamine aminotransferases
    4.9e-17   59.6   0.0    9.2e-17   58.7   0.0    1.4  1  TIGR01264 tyr_amTase_E: tyrosine aminotransferase
    7.1e-17   59.3   0.0      9e-17   59.0   0.0    1.3  1  TIGR01140 L_thr_O3P_dcar: threonine-phosphate decarboxylase
    8.5e-17   58.9   0.0      2e-15   54.4   0.0    2.1  2  TIGR03947 viomycin_VioD: capreomycidine synthase
    5.7e-15   52.9   0.0    1.9e-14   51.2   0.0    1.8  1  TIGR03538 DapC_gpp: succinyldiaminopimelate transaminase
      9e-05   18.8   0.0    0.00016   18.0   0.0    1.3  1  TIGR03801 asp_4_decarbox: aspartate 4-decarboxylase


Domain annotation for each model (and alignments):
>> TIGR03542  DAPAT_plant: LL-diaminopimelate aminotransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  541.7   0.0    6e-166  2.2e-163       2     400 ..      23     421 ..      22     423 .] 0.99

  Alignments for each domain:
  == domain 1    score: 541.7 bits;  conditional E-value: 6e-166
   TIGR03542   2 kvnehflklkssylfseiakkvkefrkknpeadiirlgiGdvtqPlakaviealkeaveelaseetfrGyGpeqGldllreaiaeeeykgridpeeifisdGakcdvarllelfgsdktvavqdPvyPvyvdsavlaGragvld.ddgkykkivylpctkenefiPelpeekkvdiiylCsPnnPtGtvltkeqlkelvdyakendslilfdaayeafisdpslPksiyeiegakecaieirsfsktlGftGvrlgytvvPkelkvedgeslkklWerllctkfnGaslivqraaeavlakeglqqikeaisyymenarilrkaleaaglkvyGGenaPylWvklpegissedffdkllkeaevvgtPGsGfGssGeGfvrlsalgkredivealerike 400
                  +ne++ kl+++ylf+ei ++ + f +knp+a+ii lgiGd+t+P+++++ + l+e  ++l ++  ++GyGpeqG+  lr +iae+ y ++i+p+e+f+sdG+kcd++rl+ +fgs+ t avqdP+yPvyvd++v++G++g++d ++++y kivy+pc   n+f+P+l ++++ d+iy+CsPnnPtG+++t++ql elv+yak+++s+i+fdaay+ fi++p +Pksi++i+ga+e+aie++s+sk +GftGvrlg+tvvPk+lk++dg+s+ ++++r++ct fnGas ivq +a a l +eg+ +ike+i+yym na +lr++  + glkvyGG +aPy++v l+   ss+d+f ++l++a+vv++PG GfG+ GeGf+rlsa++ r+ + ea++r+k+
  MMETSP1137-20121227|6855_1  23 ARNENMGKLQAGYLFPEIGRRRNAFLEKNPDAKIISLGIGDTTRPIPPHILKGLTEGSSKLGTDSGYAGYGPEQGVAELRSKIAEKLYDNKISPDEVFVSDGSKCDIGRLQLMFGSQVTSAVQDPSYPVYVDTSVIMGQTGTMDaEKKQYGKIVYMPCNPGNDFFPDLENTPRADVIYFCSPNNPTGAAATTAQLTELVEYAKKQGSIIVFDAAYAPFITNPXVPKSIFDIPGAREVAIEVNSLSKYAGFTGVRLGWTVVPKDLKFADGSSVAADFNRIMCTAFNGASRIVQSGALACLDDEGMAEIKELIDYYMGNAALLRQTCLDLGLKVYGGTDAPYVFVDLDG-RSSWDMFSHILETAQVVTIPGAGFGPGGEGFLRLSAFAPRSACEEACKRLKN 421
                 69**********************************************************************************************************************************************999*****************************************************************************************************************************************************************************************************975.9*************************************************97 PP

>> TIGR03540  DapC_direct: LL-diaminopimelate aminotransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  181.6   0.0   1.2e-56   4.6e-54      11     382 ..      34     421 ..      24     422 .. 0.86

  Alignments for each domain:
  == domain 1    score: 181.6 bits;  conditional E-value: 1.2e-56
   TIGR03540  11 Pylfaeidklkaekkak..GvdvidlgiGdPdlptpkeivealkkaaek....penhryPsyeGllayrkavadwykkrfgveldpetevlsliGskeGiahlplafvnpGdivlvpdPgyPvykistllag............gepyelPlkeendflPdldaipedvlkkakilflnyPnnPtsavadkeffkevvefakeyniivvhdaayseivfdeykalsflevdgakdvaielhslsktynmtGWrigfavGnkel........iaalgkvksnvdsGvfqaiqeaaiaaleeee.evvkelrkvykkrrdllvealkkiGldvkkpkatfylWvkvPeGytsaefakklleeagvvvtpGvgfGesGeGyirisltvseerlkeaverlkk 382
                  ylf ei + ++  ++k   +++i+lgiGd   p p +i++ l++  +k    +    y  ++G++++r ++a+   k ++ ++ p+ ev    Gsk  i  l+l f  +     v dP+yPvy  ++ ++g            g+  ++P +  ndf+Pdl++ p     +a +++   PnnPt+a a++  + e+ve+ak+++ i+v+daay+  +++   + s+++++ga++vaie++slsk    tG r+g++v  k+l         a ++++      G+   +q+ a+a l++e  + +kel++ y    +ll ++  ++Gl+v     + y++v   +G +s ++ +++le a+vv  pG gfG  GeG++r+s   +++  +ea +rlk+
  MMETSP1137-20121227|6855_1  34 GYLFPEIGRRRNAFLEKnpDAKIISLGIGDTTRPIPPHILKGLTEGSSKlgtdSGYAGYGPEQGVAELRSKIAE---KLYDNKISPD-EVFVSDGSKCDIGRLQLMFGSQV-TSAVQDPSYPVYVDTSVIMGqtgtmdaekkqyGKIVYMPCNPGNDFFPDLENTP-----RADVIYFCSPNNPTGAAATTAQLTELVEYAKKQGSIIVFDAAYAPFITNPXVPKSIFDIPGAREVAIEVNSLSKYAGFTGVRLGWTVVPKDLkfadgssvAADFNRIMCTAFNGASRIVQSGALACLDDEGmAEIKELIDYYMGNAALLRQTCLDLGLKVYGGTDAPYVFVDL-DGRSSWDMFSHILETAQVVTIPGAGFGPGGEGFLRLSAFAPRSACEEACKRLKN 421
                 5*******99998777622578*********************9887661111444568889*********996...6678889998.566678**********9996654.56799*******8766655422222222333345679*************9988.....799***********************************************************************************9988763322222145688888888899999**********98762689*************************************9.9***************************************************97 PP

>> TIGR03537  DapC: succinyldiaminopimelate transaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.7   0.0   5.4e-26     2e-23       2     348 ..      56     420 ..      55     422 .. 0.75

  Alignments for each domain:
  == domain 1    score: 80.7 bits;  conditional E-value: 5.4e-26
   TIGR03537   2 lydfGtGdpkeptddfirkalldavpev...sqypsvlGekalreaiagylerrfgvkldpdaevlpsaGskeaifhlplafldpeeerkkviygtpgypvy........erGalfaggeal....kvklkkedgflleldaveeailretkivwinyphnptGaeapasylkevaelareygiilasdecyaeiysee.kpasvlev..glenvlafhslskrsGmtGyrsgf........laGdeelvsalrklrasvGvaspefvqaaataawsddahvaerrki..fkrkrdlfleflakkGlealasdatfylwvkvpegidaksyalrlleeG.ivvapGeafgageeeyvrvalvptleeceeairlwe 348
                 +  +G+Gd + p ++ i k l +   ++   s y     e+ + e  ++  e+ ++ k+ pd ev+ s Gsk  i  l+l f      + + ++ +p+ypvy        + G++ a+ + +     +  ++ ++f+ +l++ +     ++ +++   p nptGa a+++ l e +e a++ g i++ d  ya   ++   p+s++++  ++e  + + slsk +G tG r g         +a  +++ + ++++  +        vq+ a a  +d+  ++ ++ i  +  +  l+ +     Gl++  +  + y++v   +   + +   ++le   +v  pG  fg+g+e+++r++    +  ceea ++ +
  MMETSP1137-20121227|6855_1  56 IISLGIGDTTRPIPPHILKGLTEGSSKLgtdSGYAGYGPEQGVAELRSKIAEKLYDNKISPD-EVFVSDGSKCDIGRLQLMFGS----QVTSAVQDPSYPVYvdtsvimgQTGTMDAEKKQYgkivYMPCNPGNDFFPDLENTP-----RADVIYFCSPNNPTGAAATTAQLTELVEYAKKQGSIIVFDAAYAPFITNPxVPKSIFDIpgAREVAIEVNSLSKYAGFTGVRLGWtvvpkdlkFADGSSVAADFNRIMCTAFNGASRIVQSGALACLDDEGMAEIKELIdyYMGNAALLRQTCLDLGLKVYGGTDAPYVFVDLDGR-SSWDMFSHILETAqVVTIPGAGFGPGGEGFLRLSAFAPRSACEEACKRLK 420
                 6779******************9876652227777776678888888888999********9.8999***************88....45567889999999322222222344444433221000233344455555555544.....478999999***********************************97776559******944577778899************9972222221123444556667777776666777899999999998887666555443266777788888999*******9999******9877.5666666666665155668**************9999999*****98765 PP

>> TIGR01141  hisC: histidinol-phosphate transaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.9   0.0   7.2e-25   2.7e-22      53     311 ..      94     382 ..      84     405 .. 0.79

  Alignments for each domain:
  == domain 1    score: 76.9 bits;  conditional E-value: 7.2e-25
   TIGR01141  53 pdpqalelkealakylg...veeenillgnGsdelielliraflepgdavlvleptysmYevsakiagaevkevplked...........gqedleavleaakekvklvflasPnnPtGnllkreeiekvleev.e.dalVVvDeAYieFsee....asvlellaeypnlvvlrTlSKafgLAglRvGyaianae........iiealekv.rapyn.vsslaleaavaalrdsd..kiektveevkkererlleelkkleglevyeS.kaNFvlikvke.daeelleallek 311
                 p++  +el++++a++l    ++++++++++Gs   i  l   f  + ++ +v +p+y +Y  ++ i g      + k++           g++ ++++   ++ ++++++++sPnnPtG+  +++++++++e + +   ++V D AY  F ++    +s +++   ++  + + +lSK  g+ g+R+G +++ ++        ++  ++++  + +n  s+++++ a+a l+d+   +i++ ++    + + l + + +l gl+vy + +a +v+++++   + +++ ++le 
  MMETSP1137-20121227|6855_1  94 PEQGVAELRSKIAEKLYdnkISPDEVFVSDGSKCDIGRLQLMFGSQVTS-AVQDPSYPVYVDTSVIMGQTGTMDAEKKQygkivympcnpGNDFFPDL--ENTPRADVIYFCSPNNPTGAAATTAQLTELVEYAkKqGSIIVFDAAYAPFITNpxvpKSIFDIPGAREVAIEVNSLSKYAGFTGVRLGWTVVPKDlkfadgssVAADFNRImCTAFNgASRIVQSGALACLDDEGmaEIKELIDYYMGNAALLRQTCLDL-GLKVYGGtDAPYVFVDLDGrSSWDMFSHILET 382
                 7778899******9987789*****************998888877766.5679******87776665443222222222333445443333344444..599*******************************86689**************88877777777777788889******************987522222222677788852578876899*************9999**********************.8****9889*******9976555666665554 PP

>> TIGR03539  DapC_actino: succinyldiaminopimelate transaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.7   0.0   1.5e-19   5.4e-17      22     357 .]      55     420 ..      43     420 .. 0.75

  Alignments for each domain:
  == domain 1    score: 59.7 bits;  conditional E-value: 1.5e-19
   TIGR03539  22 GivdlsvGtPvdpvpalirealaeaada.......pgyPqtaGteelreaivdalerrlgvkgldeeavlPviGtkelvallPtllGlgagdtvviPevayPtyevgarlagaeavaaddlteldp...................ekvkliwlnsPanPtGrvlsveelrkvvalarergvvvasdecylelgWege.avsvldpevcggdlegllavhslskrsnlagyragfvaGdeal..vaellevrkhaGlmv......paPvqaamvaaladdehv..aeqkeryaarrellkaalekaGfriehseaglylWat.rgedaretvdrlaelG.ilvaPGdfygeagkefvrvaltatderiaaaverlt 357
                  i+ l +G    p+p+ i + l+e + +        gy   +G  elr  i+++l        +++++v+   G+k  +  l  ++G + +++v  P  +yP y  ++ + g +     + ++ ++                    + ++i++ sP nPtG  ++  +l+++v++a+++g +++ d  y+ +  +   + s++d     g +e  + v slsk + ++g r g+ +  ++l   +    +     +m       +  vq+   a l+d+  +  +e  + y    +ll+++  + G+++     + y++    g+++++  +++ e+  +++ PG  +g+ g+ f+r++  a  +  ++a +rl+
  MMETSP1137-20121227|6855_1  55 KIISLGIGDTTRPIPPHILKGLTEGSSKlgtdsgyAGYGPEQGVAELRSKIAEKLYDN----KISPDEVFVSDGSKCDIGRLQLMFGSQVTSAVQDP--SYPVYVDTSVIMGQTGTMDAEKKQYGKivympcnpgndffpdlentPRADVIYFCSPNNPTGAAATTAQLTELVEYAKKQGSIIVFDAAYAPFITNPXvPKSIFDI---PGAREVAIEVNSLSKYAGFTGVRLGWTVVPKDLkfADGSSVAADFNRIMCtafngaSRIVQSGALACLDDEGMAeiKELIDYYMGNAALLRQTCLDLGLKVYGGTDAPYVFVDlDGRSSWDMFSHILETAqVVTIPGAGFGPGGEGFLRLSAFAPRSACEEACKRLK 420
                 4899******************997654222222257888999999999998877543....37789*********************999999988..699997666666555443333333332233333334444444443346799******************************************999886889*995...6888999*******************8765554212223333334444431111114567777777777765431144557899999**************9998888888652789******998876527788*****************************995 PP

>> TIGR01265  tyr_nico_aTase: tyrosine/nicotianamine aminotransferases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.9   0.0   2.9e-20   1.1e-17      24     397 ..      47     421 ..      40     423 .] 0.79

  Alignments for each domain:
  == domain 1    score: 61.9 bits;  conditional E-value: 2.9e-20
   TIGR01265  24 kkkpeeekpviklslGdPsvfgnlrtaeeaeeavadavrsgkfngYapsvGvlaareavaeylskeleakleaddvvltsGcsqaielviealanaganiLvPrPgfplYetlak......alglevrkyd......llpekdweidldelealaDektvalvvinPsnPcGsvfsrdHlekvvevaeklklliiaDEvYdklvfgdatfvplaklas.kvPvlslggiskrwlvPGWrlGWlivvdpkgiledt.vlqglkk.llqlildpatlvqgAlpdilektpkeffekkikvlkenaelvyeelkeipgltcvkPegamyllvklelelleeikdDvdFceklvkEesvillPgsale..lenylRitltveksvleealeRike 397
                 + + +++ ++i l++Gd +     +  +  +e   +      + gY+p +Gv + r+ +ae l    ++k+++d+v+++ G++  i  +      +     v  P++p Y   +       +++ e ++y       + p++d+  dl++       +  ++    P+nP+G+  +   l ++ve a+k++ +i+ D  Y+ ++ +     ++ ++       + ++++sk     G rlGW +v    +    + v    ++ +++   +++ +vq    + l +      ++ i+    na l+ ++  ++ gl++     a y++v+l+           d ++++++  +v+ +Pg  ++   e++lR++   + s  eea++R+k+
  MMETSP1137-20121227|6855_1  47 FLEKNPDAKIISLGIGDTTRPIPPHILKGLTEGSSKLGTDSGYAGYGPEQGVAELRSKIAEKLY---DNKISPDEVFVSDGSKCDIGRLQLMFG-SQVTSAVQDPSYPVYVDTSVimgqtgTMDAEKKQYGkivympCNPGNDFFPDLENT-----PRADVIYFCSPNNPTGAAATTAQLTELVEYAKKQGSIIVFDAAYAPFITNPXVPKSIFDIPGaREVAIEVNSLSKYAGFTGVRLGWTVVPKDLKFADGSsVAADFNRiMCTAFNGASRIVQSGALACLDDEGMAEIKELIDYYMGNAALLRQTCLDL-GLKVYGGTDAPYVFVDLDGRS------SWDMFSHILETAQVVTIPGAGFGpgGEGFLRLSAFAPRSACEEACKRLKN 421
                 55677889999*****9776544444444444444444555699*****************998...9*************9998876544444.344446899******65443111111567888998622222244666666666654.....356789999*************************************99877666666666431334689*******************999888888877888887725677789999***887888888888889999999999999999999986.899999***********9765......4588999***************733699********************97 PP

>> TIGR01264  tyr_amTase_E: tyrosine aminotransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.7   0.0   2.5e-19   9.2e-17      25     397 ..      48     421 ..      42     423 .] 0.78

  Alignments for each domain:
  == domain 1    score: 58.7 bits;  conditional E-value: 2.5e-19
   TIGR01264  25 vkPnPekkviklsiGdPtvdgnlktseeavkalkesvdsgkynGyaptvGaleareaiaeyyankradgeleaddvvlasGcshalelaiealadaGenvlvPrPGfplyet..l....akaldievklyn......lladedweidlkelesliddktkalivnnPsnPcGsvfsrkhleellalaerlklpiladeiyedlvfkgatflalaslssev.PilslgGlakrllvPGWrlGWliihdrkgvlrd..vkdGlkk.lsqrilGpntlvqGalkeilrktPqeyfdgvvsvlesnadlvyealaevvGlkpvkPkGamyllvkielekfkelksdvefveklveeesvfvlPgsifel..Pgylrvvltvpkavleeavsrike 397
                 ++ nP+ k+i+l iGd t     +  +  ++   +      y Gy+p +G  e r +iae       d++++ d+v ++ G+   +   ++ +  +     v  P +p y    +    + ++d e k y       + +++d+  dl++       ++ ++    P nP+G+  +   l el+  a+++  +i+ d  y+ ++ +    +++ ++       + ++ l+k     G rlGW ++    +   +  v   + + +++   G++ +vq      l +     ++++++    na l+ ++  ++ Glk+     a y++v+++           +++ +++e  +v  +Pg+ f     g+lr+    p +  eea++r+k+
  MMETSP1137-20121227|6855_1  48 LEKNPDAKIISLGIGDTTRPIPPHILKGLTEGSSKLGTDSGYAGYGPEQGVAELRSKIAEKLY----DNKISPDEVFVSDGSKCDIGR-LQLMFGSQVTSAVQDPSYPVYVDtsVimgqTGTMDAEKKQYGkivympCNPGNDFFPDLENT-----PRADVIYFCSPNNPTGAAATTAQLTELVEYAKKQGSIIVFDAAYAPFITNPXVPKSIFDIPGAReVAIEVNSLSKYAGFTGVRLGWTVVPKDLKFADGssVAADFNRiMCTAFNGASRIVQSGALACLDDEGMAEIKELIDYYMGNAALLRQTCLDL-GLKVYGGTDAPYVFVDLDGRS------SWDMFSHILETAQVVTIPGAGFGPggEGFLRLSAFAPRSACEEACKRLKN 421
                 5679************9876554444555555555555567******************9887....99******9998887776654.44444444555788999999964122111134678888988622221244556666665543.....46789999*************************************************9997544146899****************999776555443336555554389999********766678888888889999999999***999998885.***************998654......4568999***************852258*******************986 PP

>> TIGR01140  L_thr_O3P_dcar: threonine-phosphate decarboxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.0   0.0   2.4e-19     9e-17      46     213 ..      94     286 ..      52     387 .. 0.87

  Alignments for each domain:
  == domain 1    score: 59.0 bits;  conditional E-value: 2.4e-19
   TIGR01140  46 Pdeeadelreaaaayy...gldaesvlavnGaqeaiqllprllapkrv.lvlaptyseyaralraagaevvels.....................dleelaaeleeadllvvvnPnNPtGrllekeellalaerlkarggllvvDEAFidftpae....slaalaealpglvVlrSltKffglaGlRlGfvvAepal 213
                 P++ ++elr+ +a++    ++++++v +  G++  i  l+ +++ + + +v  p+y  y ++  + g + ++ +                     dle+      +ad++ ++ PnNPtG + ++++l++l+e +k++g ++v D A++ f  +     s+ + + a +  + + Sl K  g+ G+RlG+ v +++l
  MMETSP1137-20121227|6855_1  94 PEQGVAELRSKIAEKLydnKISPDEVFVSDGSKCDIGRLQLMFGSQVTsAVQDPSYPVYVDTSVIMGQTGTMDAekkqygkivympcnpgndffpDLENT----PRADVIYFCSPNNPTGAAATTAQLTELVEYAKKQGSIIVFDAAYAPFITNPxvpkSIFDIPGAREVAIEVNSLSKYAGFTGVRLGWTVVPKDL 286
                 9999999999888764222566********************99998889***************9999888778999**********977644444444....69********************************************98764112367777777777788*****************9977765 PP

>> TIGR03947  viomycin_VioD: capreomycidine synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.4   0.0   5.3e-18     2e-15      49     230 ..      94     286 ..      89     297 .. 0.69
   2 ?    2.3   0.0     0.037        14     311     350 ..     373     414 ..     344     423 .] 0.73

  Alignments for each domain:
  == domain 1    score: 54.4 bits;  conditional E-value: 5.3e-18
   TIGR03947  49 eslGgeklraaladrlagGd..aekvlvthGsseaiylvltallrPGdevvvvdpayhslselavalga............kvrrwplaaerdfrpdlddlralvtdrtrlvvvnfPhnPtGasvderelsellelaaesgavllWdaafadlvydaeplp....epsaaadrvisfgtlskafGlpGlrvGWcvaPkdl 230
                 + +G ++lr  +a++l + +  +++v+v+ Gs   i   l+++        v+dp+y   ++ +v +g             k+  +p ++ +df pdl++     t+r+ ++    P+nPtGa+ ++++l+el+e a++ g+++++daa+a ++ + + +p    +   a + +i ++ lsk  G++G+r+GW+v+Pkdl
  MMETSP1137-20121227|6855_1  94 PEQGVAELRSKIAEKLYDNKisPDEVFVSDGSKCDIG-RLQLMFGSQVTSAVQDPSYPVYVDTSVIMGQtgtmdaekkqygKIVYMPCNPGNDFFPDLEN-----TPRADVIYFCSPNNPTGAAATTAQLTELVEYAKKQGSIIVFDAAYAPFITN-PXVPksifDIPGAREVAIEVNSLSKYAGFTGVRLGWTVVPKDL 286
                 5678888888888888766422567888888876664.23333333333356777776666666655431111111111113344555555566555554.....89999999999***********************************99865.45550111444556778999**********************9 PP

  == domain 2    score: 2.3 bits;  conditional E-value: 0.037
   TIGR03947 311 tdlCerllarhgvlvvPGscfGaadr..vrlGfggssaelea 350
                  d+  ++l+  +v+++PG+ fG   +  +rl   +++++ e+
  MMETSP1137-20121227|6855_1 373 WDMFSHILETAQVVTIPGAGFGPGGEgfLRLSAFAPRSACEE 414
                 56778999*************987665677765555555555 PP

>> TIGR03538  DapC_gpp: succinyldiaminopimelate transaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.2   0.0   5.1e-17   1.9e-14      23     394 ..      48     422 ..      24     423 .] 0.72

  Alignments for each domain:
  == domain 1    score: 51.2 bits;  conditional E-value: 5.1e-17
   TIGR03538  23 vtppadleeialsiGePkhatPafvlealvenleel......skyPttkGlpelreaiaeWlerrfelpagvdperqvlPvnGtrealfafvqavidraekalvvlPnPfyqiyeGaallag............aepyflnctaengfkpdfdavpeevWkrvqllfvcsPgnPtGavlsleelkklleladkydfiiasdecyselyldeaeaPvGlleaaaelGrddfkrllvfhslskrsnvPGlrsGf..v......aGdaellkeflryrtyhGcampiavqlasiaaWede..khvrenralyrekfaav.leilgavldlelPdasfylWlkvpdgddeafaralyeeenvkvlpGrylsreaegvnPGegrvrlalvaeleecveaaerikkl 394
                 +  + d + i+l iG+   + P  +l+ l+e  ++l      + y   +G +elr+ iae l   ++ +   +p ++v+   G++  +  + q +  ++ +++v   +P y +y  ++++ g            +++++++c++ n+f pd++  p     r+ +++ csP+nPtGa  ++ +l++l+e a+k + ii  d  y+ +   +   P  +++     G    +  +  +slsk +   G+r G+  v      a  +++ ++f r         +  vq  ++a  +de  + ++e  + y    a + ++ l   l++     + y+++        ++  ++ e+++v ++pG+ +      +  Geg++rl+  a+  +c+ea +r+k++
  MMETSP1137-20121227|6855_1  48 LEKNPDAKIISLGIGDTTRPIPPHILKGLTEGSSKLgtdsgyAGYGPEQGVAELRSKIAEKL---YDNKI--SP-DEVFVSDGSKCDIGRL-QLMFGSQVTSAVQ--DPSYPVYVDTSVIMGqtgtmdaekkqyGKIVYMPCNPGNDFFPDLENTP-----RADVIYFCSPNNPTGAAATTAQLTELVEYAKKQGSIIVFDAAYAPFIT-NPXVPKSIFDIP---GA--REVAIEVNSLSKYAGFTGVRLGWtvVpkdlkfADGSSVAADFNRIMCTAFNGASRIVQSGALACLDDEgmAEIKELIDYYMGNAALLrQTCLDLGLKVYGGTDAPYVFVDLDGRSSWDMFSHILETAQVVTIPGAGF------GPGGEGFLRLSAFAPRSACEEACKRLKNV 422
                 3345667799*******************99888773332225588899******9999755...55443..44.4566677777666443.4444444444443..3334444333222211111111122226789**************9988.....689*****************************************9877.566888888765...43..4456889***************843322222244466888999876655555567789999******94345677778888777766245678889999999999******8888889999999**********754......455899********************986 PP

>> TIGR03801  asp_4_decarbox: aspartate 4-decarboxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.0   4.3e-07   0.00016     239     326 ..     194     284 ..     188     290 .. 0.76

  Alignments for each domain:
  == domain 1    score: 18.0 bits;  conditional E-value: 4.3e-07
   TIGR03801 239 pkikalfvvnPsnPpsvaiseesieklakiveekrpdLmiltDDvygtfvddf...rsllae..lpantilvysfskyfgatGWrlgvialhk 326
                 p+  +++   P+nP++ a +++++ +l++  ++  +  +i+ D  y+ f  +    +s++      + +i v s sky g tG rlg   + k
  MMETSP1137-20121227|6855_1 194 PRADVIYFCSPNNPTGAAATTAQLTELVEYAKK--QGSIIVFDAAYAPFITNPxvpKSIFDIpgAREVAIEVNSLSKYAGFTGVRLGWTVVPK 284
                 5566788999******99877777776666555..5679999*******98742337898651134568999**************9776655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (423 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       124  (0.0302292); expected 82.0 (0.02)
Passed bias filter:                      123  (0.0299854); expected 82.0 (0.02)
Passed Vit filter:                        20  (0.00487567); expected 4.1 (0.001)
Passed Fwd filter:                        11  (0.00268162); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.51u 0.18s 00:00:00.69 Elapsed: 00:00:00.85
# Mc/sec: 656.84
//
Query:       MMETSP1137-20121227|6856_1  [L=81]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (81 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        30  (0.00731351); expected 82.0 (0.02)
Passed bias filter:                       30  (0.00731351); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.40
# Mc/sec: 267.28
//
Query:       MMETSP1137-20121227|6857_1  [L=810]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00019   19.2   0.0    0.00038   18.2   0.0    1.4  1  TIGR02878 spore_ypjB: sporulation protein YpjB


Domain annotation for each model (and alignments):
>> TIGR02878  spore_ypjB: sporulation protein YpjB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.0   9.2e-08   0.00038     102     211 ..     345     455 ..     340     458 .. 0.88

  Alignments for each domain:
  == domain 1    score: 18.2 bits;  conditional E-value: 9.2e-08
   TIGR02878 102 kkvmealtelekavqkedakafkeklneflslydlirPslkidveedevervdselelleeerfvqlse..dekeeqlellredlkelfdgvkeDeadPsLlWviisiGgli 211
                 ++v ea++e+ + v   da   ++++ + + ++++  Ps   +v e+ ++ ++ ++e + +e+ +++++   +  +++e   + + + f++v++ ea  sLlW+i   G +i
  MMETSP1137-20121227|6857_1 345 ANVSEAMEEIAEYVTDPDASVARAAV-SAIGKFGVKVPSCGGAVVEQLMKFLEVDIEHVSAEAIISMKNllRKYPDRIERFIHGIGAFFKNVDDSEAKVSLLWMIAEYGHVI 455
                 67889999999999888876655555.56789*******************************9999973356779******************************999887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (810 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       177  (0.0431497); expected 82.0 (0.02)
Passed bias filter:                       98  (0.0238908); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.15s 00:00:00.66 Elapsed: 00:00:00.65
# Mc/sec: 1644.79
//
Query:       MMETSP1137-20121227|6858_1  [L=159]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      1e-05   22.0   1.4      0.018   11.2   0.1    2.0  2  TIGR02696 pppGpp_PNP: guanosine pentaphosphate synthetase I/polyribonucleotide nucleotidyltransferase
    9.4e-05   18.8   1.3      0.029   10.6   0.1    2.0  2  TIGR03591 polynuc_phos: polyribonucleotide nucleotidyltransferase
     0.0038   13.6   0.1       0.63    6.3   0.0    2.1  2  TIGR03319 YmdA_YtgF: conserved hypothetical protein YmdA/YtgF


Domain annotation for each model (and alignments):
>> TIGR02696  pppGpp_PNP: guanosine pentaphosphate synthetase I/polyribonucleotide nucleotidyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.2   0.1   1.3e-05     0.018     581     617 ..      21      58 ..      10     120 .. 0.76
   2 !   10.7   0.1   1.9e-05     0.026     582     615 ..     116     150 ..      81     155 .. 0.86

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 1.3e-05
   TIGR02696 581 iavkipvd.kigevigpkgkvinsiqdetgaeisiedd 617
                 + ++ip    +  vig +g  ins+q +tg++++i+  
  MMETSP1137-20121227|6858_1  21 TVIEIPNGpEVNFVIGQRGAHINSLQADTGTHVTIQRL 58 
                 55677754267889*********************854 PP

  == domain 2    score: 10.7 bits;  conditional E-value: 1.9e-05
   TIGR02696 582 avkipvd.kigevigpkgkvinsiqdetgaeisie 615
                  v+ip    +  vig kg  ins+q etg++++i+
  MMETSP1137-20121227|6858_1 116 VVQIPNGpEVNFVIGGKGANINSLQAETGTHVAIQ 150
                 4677754267889*******************997 PP

>> TIGR03591  polynuc_phos: polyribonucleotide nucleotidyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.6   0.1   2.1e-05     0.029     552     614 ..      20      92 ..       9     106 .. 0.72
   2 !    7.8   0.1   0.00015       0.2     560     587 ..     123     150 ..      92     155 .. 0.85

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 2.1e-05
   TIGR03591 552 ietikink.dkireviGkgGkvireiieetgakidiedd.........Gtvkiaaadkeaaekakklieeita 614
                 +++i+i++  +++ viG+ G+ i++++ +tg++++i+            t++i++ d++a  +  +li++ ++
  MMETSP1137-20121227|6858_1  20 TTVIEIPNgPEVNFVIGQRGAHINSLQADTGTHVTIQRLhdvpagssvRTITISGGDEHARARCASLIQAKVN 92 
                 56677765248999**********************8542244433333566666666666666666666555 PP

  == domain 2    score: 7.8 bits;  conditional E-value: 0.00015
   TIGR03591 560 dkireviGkgGkvireiieetgakidie 587
                  +++ viG +G++i++++ etg+++ i+
  MMETSP1137-20121227|6858_1 123 PEVNFVIGGKGANINSLQAETGTHVAIQ 150
                 47899********************997 PP

>> TIGR03319  YmdA_YtgF: conserved hypothetical protein YmdA/YtgF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.3   0.0   0.00046      0.63     200     241 ..      15      56 ..       3      89 .. 0.86
   2 !    5.7   0.0   0.00068      0.93     206     240 ..     115     149 ..     104     155 .. 0.86

  Alignments for each domain:
  == domain 1    score: 6.3 bits;  conditional E-value: 0.00046
   TIGR03319 200 vaestvsvvslpndemkGRiiGreGRniralEtltGvdliiD 241
                 ++  t++v+++pn      +iG+ G  i +l + tG  + i 
  MMETSP1137-20121227|6858_1  15 AGAATTTVIEIPNGPEVNFVIGQRGAHINSLQADTGTHVTIQ 56 
                 5567999*******9999******************999885 PP

  == domain 2    score: 5.7 bits;  conditional E-value: 0.00068
   TIGR03319 206 svvslpndemkGRiiGreGRniralEtltGvdlii 240
                  vv++pn      +iG +G ni +l + tG  + i
  MMETSP1137-20121227|6858_1 115 LVVQIPNGPEVNFVIGGKGANINSLQAETGTHVAI 149
                 6899999988899*****************99887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (159 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       136  (0.0331546); expected 82.0 (0.02)
Passed bias filter:                      110  (0.0268162); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.25u 0.18s 00:00:00.43 Elapsed: 00:00:00.38
# Mc/sec: 552.27
//
Query:       MMETSP1137-20121227|6859_1  [L=202]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (202 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        43  (0.0104827); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.16s 00:00:00.35 Elapsed: 00:00:00.34
# Mc/sec: 784.17
//
Query:       MMETSP1137-20121227|6860_1  [L=277]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.016   12.1   0.7      0.053   10.4   0.3    1.7  2  TIGR00443 hisZ_biosyn_reg: ATP phosphoribosyltransferase, regulatory subunit


Domain annotation for each model (and alignments):
>> TIGR00443  hisZ_biosyn_reg: ATP phosphoribosyltransferase, regulatory subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0     0.034   1.4e+02     224     244 ..      39      59 ..       8      66 .. 0.75
   2 ?   10.4   0.3   1.3e-05     0.053     167     250 ..     178     259 ..     152     262 .. 0.75

  Alignments for each domain:
  == domain 1    score: -0.8 bits;  conditional E-value: 0.034
   TIGR00443 224 sesakaaldeLeavlelleal 244
                 + ++ aal+eLea+++++ ++
  MMETSP1137-20121227|6860_1  39 NMATDAALEELEAIAAIMGEA 59 
                 444567888888888877654 PP

  == domain 2    score: 10.4 bits;  conditional E-value: 1.3e-05
   TIGR00443 167 eareelrealerkdlvaleelvaeaelkeeakekllaLprlrGkpeevleelaklagsesakaaldeLeavlellealgveeev 250
                 + ++e++e +++ ++++ +  +++ +++ee+ + l++++r  Gk  ++l+ ++++    +  +  ++L++v+++l++++ +e v
  MMETSP1137-20121227|6860_1 178 SPEAEVVERMRDVEVSEDDLELDSDDMDEEMIDALREVLRGTGKLVHALDAAEAMKAGSK--QQKAALREVWRALTPAQRREMV 259
                 3344455555555555555557999******************************99988..7888899999999988877655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (277 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       144  (0.0351048); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.25u 0.11s 00:00:00.36 Elapsed: 00:00:00.36
# Mc/sec: 1015.58
//
Query:       MMETSP1137-20121227|6861_1  [L=553]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.093    9.0   0.8       0.15    8.4   0.6    1.2  1  TIGR03904 SAM_YgiQ: uncharacterized radical SAM protein YgiQ


Domain annotation for each model (and alignments):
>> TIGR03904  SAM_YgiQ: uncharacterized radical SAM protein YgiQ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   0.6   3.6e-05      0.15     288     319 ..     147     180 ..     136     189 .. 0.82

  Alignments for each domain:
  == domain 1    score: 8.4 bits;  conditional E-value: 3.6e-05
   TIGR03904 288 paleeikfsvtshrGCfGgCs..FCaiteHqgri 319
                 +a++  +  v + rGC +gC+   Ca++eH+g++
  MMETSP1137-20121227|6861_1 147 DAFRRAHAEVRAIRGCTAGCTltLCAVNEHRGEL 180
                 67888888999*********7337*******986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (553 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        79  (0.0192589); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.15s 00:00:00.53 Elapsed: 00:00:00.39
# Mc/sec: 1871.54
//
Query:       MMETSP1137-20121227|6862_1  [L=90]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (90 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        63  (0.0153584); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.13s 00:00:00.26 Elapsed: 00:00:00.27
# Mc/sec: 439.96
//
Query:       MMETSP1137-20121227|6863_1  [L=325]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (325 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        91  (0.0221843); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.16s 00:00:00.42 Elapsed: 00:00:00.34
# Mc/sec: 1261.66
//
Query:       MMETSP1137-20121227|6865_1  [L=218]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (218 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       112  (0.0273038); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.15s 00:00:00.36 Elapsed: 00:00:00.46
# Mc/sec: 625.51
//
Query:       MMETSP1137-20121227|6866_1  [L=240]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0098   13.2   0.9      0.013   12.9   0.7    1.1  1  TIGR00688 rarD: protein RarD


Domain annotation for each model (and alignments):
>> TIGR00688  rarD: protein RarD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.9   0.7   3.1e-06     0.013      95     196 ..      78     181 ..      52     203 .. 0.81

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 3.1e-06
   TIGR00688  95 slleaslGylinPlvsv.vlGiv..flkeklsrlklvaviiailGvivsivlfGslpyvalvlalsfalyglvrkklkvedligllletlsllPvaiiyllatdd 196
                  +l +s+G+ +   vs    G++  ++  +l+r+   av ++++G ++++ + G+l+ v +vla+  ++    r  l+      + + t+s+l va   l+   d
  MMETSP1137-20121227|6866_1  78 PMLLVSFGFGVVNSVSTdKTGVIscMVTGHLQRIATSAVELSTTG-LSDAQKRGALTSVQIVLAFMTGVICTARVVLNDAVRSPVPFPTFSILAVAYSLLFVLHD 181
                 578899998655545441677764467899**************9.79**************************99999999999**********9887776554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (240 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       110  (0.0268162); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.21u 0.13s 00:00:00.34 Elapsed: 00:00:00.38
# Mc/sec: 833.62
//
Query:       MMETSP1137-20121227|6867_1  [L=197]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (197 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        66  (0.0160897); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.16s 00:00:00.34 Elapsed: 00:00:00.33
# Mc/sec: 787.93
//
Query:       MMETSP1137-20121227|6868_1  [L=463]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (463 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       163  (0.0397367); expected 82.0 (0.02)
Passed bias filter:                      107  (0.0260848); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.14s 00:00:00.49 Elapsed: 00:00:00.59
# Mc/sec: 1035.78
//
Query:       MMETSP1137-20121227|6869_1  [L=36]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (36 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        23  (0.00560702); expected 82.0 (0.02)
Passed bias filter:                       23  (0.00560702); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.13s 00:00:00.23 Elapsed: 00:00:00.32
# Mc/sec: 148.49
//
Query:       MMETSP1137-20121227|6870_1  [L=522]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (522 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       138  (0.0336421); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.13s 00:00:00.48 Elapsed: 00:00:00.57
# Mc/sec: 1187.90
//
Query:       MMETSP1137-20121227|6871_1  [L=252]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (252 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        83  (0.020234); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.17s 00:00:00.38 Elapsed: 00:00:00.76
# Mc/sec: 437.65
//
Query:       MMETSP1137-20121227|6873_1  [L=206]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (206 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       157  (0.038274); expected 82.0 (0.02)
Passed bias filter:                       99  (0.0241346); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.12s 00:00:00.32 Elapsed: 00:00:00.34
# Mc/sec: 799.70
//
Query:       MMETSP1137-20121227|6874_1  [L=62]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (62 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        66  (0.0160897); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.13s 00:00:00.25 Elapsed: 00:00:00.41
# Mc/sec: 199.59
//
Query:       MMETSP1137-20121227|6875_1  [L=206]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (206 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        90  (0.0219405); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.14s 00:00:00.34 Elapsed: 00:00:00.35
# Mc/sec: 776.85
//
Query:       MMETSP1137-20121227|6876_1  [L=409]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   2.7e-170  564.1   2.8   3.2e-170  563.9   2.0    1.0  1  TIGR02818 adh_III_F_hyde: S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase
    4.3e-83  277.4   2.1      5e-83  277.2   1.4    1.0  1  TIGR03989 Rxyl_3153: oxidoreductase, Rxyl_3153 family
      1e-70  236.2   3.3    1.2e-70  236.0   2.3    1.0  1  TIGR03451 mycoS_dep_FDH: mycothiol-dependent formaldehyde dehydrogenase
    1.3e-32  111.0   0.4    2.9e-17   60.5   0.0    2.1  2  TIGR00692 tdh: L-threonine 3-dehydrogenase
    1.1e-30  104.8   9.1    2.4e-30  103.7   6.3    1.5  1  TIGR03366 HpnZ_proposed: putative phosphonate catabolism associated alcohol dehydrogenase
    6.3e-25   85.8   3.2    1.4e-24   84.6   2.2    1.5  1  TIGR03201 dearomat_had: 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase
    3.9e-19   66.3   3.4    5.8e-19   65.8   2.3    1.2  1  TIGR02819 fdhA_non_GSH: formaldehyde dehydrogenase, glutathione-independent
    1.2e-13   48.6   3.2    7.8e-07   26.2   0.0    2.2  2  TIGR02824 quinone_pig3: putative NAD(P)H quinone oxidoreductase, PIG3 family
    4.5e-13   46.8   4.8    3.5e-12   43.9   0.5    2.1  2  TIGR02822 adh_fam_2: zinc-binding alcohol dehydrogenase family protein
      1e-09   36.1   0.0    1.2e-06   26.0   0.0    2.1  2  TIGR02817 adh_fam_1: zinc-binding alcohol dehydrogenase family protein
    4.3e-05   20.2   2.6    0.00088   15.9   1.8    2.2  1  TIGR01751 crot-CoA-red: crotonyl-CoA reductase


Domain annotation for each model (and alignments):
>> TIGR02818  adh_III_F_hyde: S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  563.9   2.0  8.5e-173  3.2e-170       3     366 ..      36     400 ..      34     402 .. 0.99

  Alignments for each domain:
  == domain 1    score: 563.9 bits;  conditional E-value: 8.5e-173
   TIGR02818   3 raavawaageplkieevdvelpkkgevlvrivatgvchtdaftlsgadpegvfpvilghegagiveavgegvtslkvgdhviplytaecgeckfcksgktnlcvavretqgkglm.pdgtsrfskdgqpiyhymgtstfseytvvaeislakinkeaalekvcllgcgvttgigavlntakveegatvavfglggiglsviqgaklakasriiaidineakfelakklgatdlvnpkdydkpiqeviveltdggvdysfecignvnvmraalesahkgwgesiiigvagagqeistrpfqlvtgrvwkgsafggvkgrtelpglveqylkgeiklddfvtetmpledineafdlmhegksirtvi 366
                 +aava++a++plk++ v v  pk+gev vr++a  +chtda+tl g+dpeg+fp+ilghegagive+vg gvt+++vgdhvip y a cg+c+fck  + nlc++vr++ g g+m  d  srf+++g+piyh+mgts fsey+v+  +slak+ k a+l+k+cllgcg++tg gav nta+ve gat avfglg++gl+vi   kla+asriia+d+ ++k+elak+ gatd+vnpkd++kpiq+viv +t+ gvdysf+c g v+vmraale++h+gwg s++igva+ag+eistrpfqlvtgr wkg+afgg k + e+p lv++y+kg++++d+++t+ +p+++in+ +d++h+g ++r+v+
  MMETSP1137-20121227|6876_1  36 QAAVAFEAKQPLKMVTVTVAPPKEGEVRVRMAAVALCHTDAYTLGGSDPEGLFPAILGHEGAGIVESVGPGVTDFEVGDHVIPCYQAYCGDCQFCKRPRINLCTSVRSATGTGVMkADMQSRFTHEGKPIYHFMGTSCFSEYSVLHAVSLAKVPKTAPLDKICLLGCGISTGWGAVANTAQVESGATAAVFGLGAVGLAVIEALKLAGASRIIAVDLLPHKLELAKQWGATDVVNPKDHEKPIQQVIVGMTEFGVDYSFDCTGSVEVMRAALECSHRGWGTSVVIGVAAAGKEISTRPFQLVTGRTWKGTAFGGWKSKPEVPMLVDSYMKGKLRIDEYITHVLPFAEINKGLDTLHKGDCLRCVL 400
                 89****************************************************************************************************************95599****************************************************************************************************************************************************************************************************************************************************98 PP

>> TIGR03989  Rxyl_3153: oxidoreductase, Rxyl_3153 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  277.2   1.4   1.3e-85     5e-83       2     370 .]      35     402 ..      34     402 .. 0.92

  Alignments for each domain:
  == domain 1    score: 277.2 bits;  conditional E-value: 1.3e-85
   TIGR03989   2 tkaavlrelgkkfeveeielddPkegevkvklaasGlChsdehlvtGdlplekyPvvgGheGaGvvekvGpgvtelkeGdhvvlsfipaCGrCrlCakGlqnlCdlGaa.llaGkqlsdgtyrlhaadgedvgqmcllgtfseytvveeasvvkidkdipldkaalvgCgvttGfGsavkaadvkaGdtvvvvGiGGvGinavqGaavaGarkvvavdpvefkrekalklGathav..asieealelvaeltnGkgadkaiitvgevegelieealklvakg.GrvvvtglakladedvklnlleltllqkelkGalfGeanpradiprllelykaGklkldelvtktykldeinegyqdlleGknirGvivy 370
                  +aav  e++++ +++ +++ +Pkegev+v++aa  lCh+d +   G  p   +P + GheGaG+ve vGpgvt+++ Gdhv+  + + CG C++C++ + nlC +      +G + +d+  r++  +g+++ ++  +++fsey v++  s+ k+ k+ pldk++l+gCg++tG+G+ +++a+v++G t +v+G+G vG++ +   ++aGa++++avd +++k+e a++ Gat +v  ++ e+++++v    +  g d +   +g+v  e++  al+   +g G+ vv+g+a+   ++++  +++l+ + ++ kG+ fG+ +++ ++p l++ y +Gkl++de +t+   + ein+g + l++G  +r v+ +
  MMETSP1137-20121227|6876_1  35 CQAAVAFEAKQPLKMVTVTVAPPKEGEVRVRMAAVALCHTDAYTLGGSDPEGLFPAILGHEGAGIVESVGPGVTDFEVGDHVIPCYQAYCGDCQFCKRPRINLCTSVRSaTGTGVMKADMQSRFTH-EGKPIYHFMGTSCFSEYSVLHAVSLAKVPKTAPLDKICLLGCGISTGWGAVANTAQVESGATAAVFGLGAVGLAVIEALKLAGASRIIAVDLLPHKLELAKQWGATDVVnpKDHEKPIQQVIVGMTEFGVDYSFDCTGSV--EVMRAALECSHRGwGTSVVIGVAAAG-KEISTRPFQLV-TGRTWKGTAFGGWKSKPEVPMLVDSYMKGKLRIDEYITHVLPFAEINKGLDTLHKGDCLRCVLLF 402
                 589*****************************************************************************************************98655055899999******99.***********************************************************************************************************995556666776665555556778888888877..566777777666559*******9865.57888999986.6789********************************************************99876 PP

>> TIGR03451  mycoS_dep_FDH: mycothiol-dependent formaldehyde dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  236.0   2.3   3.1e-73   1.2e-70       3     357 ..      36     401 ..      34     402 .. 0.91

  Alignments for each domain:
  == domain 1    score: 236.0 bits;  conditional E-value: 3.1e-73
   TIGR03451   3 kaviarskgapveledivvpdpgpgevvvkiqacgvchtdlayreggisde..fpfllgheaagvveavgegvtdvepgdyvvlnwravcgecrackrgrpkycfdthnae......kkmt...ledgtelsaalgigafaektlvaagqctkvdpaadpavagllgcgvmaglgaavntgevkrgdsvavigvggvgeaaiagaalagakkiiavdiddkklerarelgathtvnsse.edvveaireltggfgadvvidavgrpetykqafyardl.agtvvlvgvptpemklelplldvfsrggalksswygdclperdfpvlvdlylqgrldldkfvserislddveeafekmkagevlrsvvv 357
                 +a +a + ++p +++++ v  p +gev v+++a+++chtd ay  gg + e  fp +lghe ag+ve+vg+gvtd e+gd+v+  ++a cg+c+ ckr r + c + + a+        m     ++g+++   +g   f e ++++a   +kv   a  + + llgcg+ +g ga  nt++v+ g + av+g+g+vg a+i   +laga++iiavd+  +kle a++ gat++vn ++ e++++++      fg+d   d  g  e  + a+       gt v++gv     ++     ++   g + k + +g    + + p+lvd y++g+l +d+++++ + + ++++ ++++++g+ lr v+ 
  MMETSP1137-20121227|6876_1  36 QAAVAFEAKQPLKMVTVTVAPPKEGEVRVRMAAVALCHTD-AYTLGGSDPEglFPAILGHEGAGIVESVGPGVTDFEVGDHVIPCYQAYCGDCQFCKRPRINLCTSVRSATgtgvmkADMQsrfTHEGKPIYHFMGTSCFSEYSVLHAVSLAKVPKTAPLDKICLLGCGISTGWGAVANTAQVESGATAAVFGLGAVGLAVIEALKLAGASRIIAVDLLPHKLELAKQWGATDVVNPKDhEKPIQQVIVGMTEFGVDYSFDCTGSVEVMRAALECSHRgWGTSVVIGVAAAGKEISTRPFQLV-TGRTWKGTAFGGWKSKPEVPMLVDSYMKGKLRIDEYITHVLPFAEINKGLDTLHKGDCLRCVLL 401
                 678999999*******************************.688887765556****************************************************999886222222122211145799************************************************************************************************************9846899998888888********************98765269*************998766664.5788999******************************************************976 PP

>> TIGR00692  tdh: L-threonine 3-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.9   0.1   2.7e-16     1e-13       7     109 ..      43     142 ..      37     160 .. 0.86
   2 !   60.5   0.0   7.8e-20   2.9e-17     117     339 ..     172     401 ..     163     402 .. 0.82

  Alignments for each domain:
  == domain 1    score: 48.9 bits;  conditional E-value: 2.7e-16
   TIGR00692   7 aeeGavltevpvpelgknevlikvkatsicGtdvhiynwdewaqkrikvpqvlGhevaGevvgiGeevegvkvGdyvsaethivcGkcvacrrGkshvcrntk 109
                 a++  +++ v v  + ++ev +++ a ++c td +       +      p +lGhe aG+v+ +G++v  ++vGd+v       cG+c+ c+r +  +c+   
  MMETSP1137-20121227|6876_1  43 AKQPLKMVTVTVAPPKEGEVRVRMAAVALCHTDAYTLGG---SDPEGLFPAILGHEGAGIVESVGPGVTDFEVGDHVIPCYQAYCGDCQFCKRPRINLCTSVR 142
                 6667899**************************876654...4556679**************************************************8754 PP

  == domain 2    score: 60.5 bits;  conditional E-value: 7.8e-20
   TIGR00692 117 Gvfaeyvvvpadnifknpkdidpelaaiq.....eplGnavdtvlesdlaGesvlvsGaGpiGllavavakaaGasqvivsdkneyrlelakkvGatrvvnvak.edlvkvvaeltsge.GvdvvlelsGapkaleqgldavang.GrvallglpeskvtidltnkvifkgltikGitGrklfetwykvsrliqs...nkldlapiithkfkldefekgfelmrsGksGkvili 339
                  +f+ey v+ a  + k+pk  + +  ++         G   +t  ++  +G + +v G G +Gl  +   k aGas++i++d   ++lelak+ Gat vvn+++ e++++ v  ++++e Gvd   + +G+ + ++ +l+   +g G   ++g+  +   i      +  g t kG      +++  +v  l++s   +kl ++  ith  ++ e +kg++ +  G + + +l+
  MMETSP1137-20121227|6876_1 172 SCFSEYSVLHAVSLAKVPKTAPLDKICLLgcgisTGWGAVANT--AQVESGATAAVFGLGAVGLAVIEALKLAGASRIIAVDLLPHKLELAKQWGATDVVNPKDhEKPIQQVI-VGMTEfGVDYSFDCTGSVEVMRAALECSHRGwGTSVVIGVAAAGKEISTRPFQLVTGRTWKGTA-FGGWKSKPEVPMLVDSymkGKLRIDEYITHVLPFAEINKGLDTLHKGDCLRCVLL 401
                 7******************999776555411100344444444..34568***************************************************986245555554.566655*********************99985777789***99999999988888888888854.3457777789999998555689***************************998875 PP

>> TIGR03366  HpnZ_proposed: putative phosphonate catabolism associated alcohol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  103.7   6.3   6.3e-33   2.4e-30       3     270 ..      57     338 ..      55     345 .. 0.83

  Alignments for each domain:
  == domain 1    score: 103.7 bits;  conditional E-value: 6.3e-33
   TIGR03366   3 laeGevlvrvllatvCGsdlhtvaGrre.gklpsvlGheavGevvalgseeaaavdgeklavGqRvvwsvavsCgrCerCrrgltqkCeslrky.Ghesl....asgwelsG........g..laehvvllaGvaivavpddlpdavaapaaCatatvaaaleaagd.legrrvlvlGaGmLGLtaaaaaeerGasrviavDpsaeRrelaaafGaealaeeeelaevrkeatdg...ravdvalelsGasaaveaalesldvg.GvvvlvGsvaPadevaldpeqvvR 270
                 ++eGev vr+ ++++C +d +t+ G  + g  p++lGhe  G v+ +g+++      +  +vG+ v+    + Cg C++C+r   + C+s+r + G  ++    +s  + +G        +  ++e+  +l+ v++++vp   p + ++  +C ++t   a+ ++++  +g++  v+G+G +GL+ + a++ +Gasr+iavD  +++ ela++ Ga+++++++ +++  +++  g    +vd  ++ +G+ + ++aale  + g G+ v++G  a ++e++ +p q+v 
  MMETSP1137-20121227|6876_1  57 PKEGEVRVRMAAVALCHTDAYTLGGSDPeGLFPAILGHEGAGIVESVGPGV------TDFEVGDHVIPCYQAYCGDCQFCKRPRINLCTSVRSAtGTGVMkadmQSRFTHEGkpiyhfmgTscFSEYS-VLHAVSLAKVPKTAPLDKICLLGCGISTGWGAVANTAQvESGATAAVFGLGAVGLAVIEALKLAGASRIIAVDLLPHKLELAKQWGATDVVNPKDHEKPIQQVIVGmteFGVDYSFDCTGSVEVMRAALECSHRGwGTSVVIGVAAAGKEISTRPFQLVT 338
                 689**********************9861568******************8......7799*****************************98642443330000333333341111111122245554.55679***********************9877777666589***************************************************99888777665544111689******************988877*********************995 PP

>> TIGR03201  dearomat_had: 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.6   2.2   3.8e-27   1.4e-24       7     347 ..      43     401 ..      39     403 .. 0.80

  Alignments for each domain:
  == domain 1    score: 84.6 bits;  conditional E-value: 3.8e-27
   TIGR03201   7 pGkplvkeeleiaelgagevvvkvaGcGvchtdldyyydgvrtnhalplalGheisGrviqagagaasl.vGkavivpavipcGecelcksGkGticraqkm.pG.....ndlqGGfas......hivvpa.....kglcavdearlkaagleleevsvvadavttpyqaav.qaglkkgdlviviGvGGvGgyavqvakalGa.avvaidideeklemvkkaGadlilnpkdisarevkkaikafakarGlrstewkilevsGskpGqesaldllsfg.atlvvvGytmdkve.....vrlsklmafdaralGnwGcppdlyaaaldlvldgkidlasfver.rpldqieevfaaahdhklkrrail 347
                 + +pl+  ++ +a +  gev v++a   +chtd  y   g       p  lGhe +G v   g g  ++ vG  vi      cG+c++ck+ + + c + +   G      d+q  f+       h +  +       l av  a++     +l++++++   ++t + a+   a+++ g  + v G G vG  +++  k  Ga  ++a+d+ + kle+ k+ Ga  ++npkd   + +++ i +++ + G+       ++++Gs+   ++al+    g +t vv+G + +  e     ++l    +++  a+G w   p+  +   d  ++gk+ +++++ +  p+ +i++ ++  h++   r ++l
  MMETSP1137-20121227|6876_1  43 AKQPLKMVTVTVAPPKEGEVRVRMAAVALCHTD-AYTLGGSDPEGLFPAILGHEGAGIVESVGPGVTDFeVGDHVIPCYQAYCGDCQFCKRPRINLCTSVRSaTGtgvmkADMQSRFTHegkpiyHFMGTScfseySVLHAVSLAKVP-KTAPLDKICLLGCGISTGWGAVAnTAQVESGATAAVFGLGAVGLAVIEALKLAGAsRIIAVDLLPHKLELAKQWGATDVVNPKDH-EKPIQQVIVGMT-EFGVDY----SFDCTGSVEVMRAALECSHRGwGTSVVIGVAAAGKEistrpFQLVTGRTWKGTAFGGWKSKPEV-PMLVDSYMKGKLRIDEYITHvLPFAEINKGLDTLHKGDCLRCVLL 401
                 56899999*************************.68999999999**************999999877559***999999*****************886531332122257776665312111133322211111233444444433.3468***************99862699****************************779**************************7.689999999876.567664....59*************9877664577788887665442222256666678999**********96.8999*************97527**************999988876 PP

>> TIGR02819  fdhA_non_GSH: formaldehyde dehydrogenase, glutathione-independent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.8   2.3   1.5e-21   5.8e-19      39     266 ..      62     298 ..      35     315 .. 0.80

  Alignments for each domain:
  == domain 1    score: 65.8 bits;  conditional E-value: 1.5e-21
   TIGR02819  39 vilkvvttnicgsdqhmvrgrttaeagl...vlgheitgevievgrdveflkigdivsvpfniacgrcrsckekktgvclnvnparagaaygyvdmggwvg..gqseyvlv...pyadfnllkfpdrdqa..lekirdltmlsdilptgyhg.avtagvktgstvyiagagpvglaaaasarllgaavvivgdlneerlaqarsfgc.etvdlkkdatlaeqieqilgepevdaavdavg 266
                 v +++ +  +c +d + + g    ++gl   +lghe +g v  vg  v  +++gd v   ++  cg c+ ck  + ++c +v  a +g+     dm       g+  y ++    ++++ +l+     +    + +  +++l   + tg+   a ta v++g+t  + g g vgla+ ++ +l ga+ +i  dl +++l  a+  g  ++v+ k +++  +q+   + e  vd + d+ g
  MMETSP1137-20121227|6876_1  62 VRVRMAAVALCHTDAYTLGGSD--PEGLfpaILGHEGAGIVESVGPGVTDFEVGDHVIPCYQAYCGDCQFCKRPRINLCTSVRSA-TGTGVMKADMQSRFTheGKPIYHFMgtsCFSEYSVLHAVSLAKVpkTAPLDKICLLGCGISTGWGAvANTAQVESGATAAVFGLGAVGLAVIEALKLAGASRIIAVDLLPHKLELAKQWGAtDVVNPKDHEKPIQQVIVGMTEFGVDYSFDCTG 298
                 5566777788888888887754..44443338*************************999**********************876.6777788999886542277777665222567777776554433211333444556666789999643779*************************************************963788888888888888777778889******98 PP

>> TIGR02824  quinone_pig3: putative NAD(P)H quinone oxidoreductase, PIG3 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.2   0.0   2.1e-09   7.8e-07      12      87 ..      44     118 ..      36     136 .. 0.87
   2 !   22.5   0.6   2.9e-08   1.1e-05      76     240 ..     156     323 ..     143     348 .. 0.79

  Alignments for each domain:
  == domain 1    score: 26.2 bits;  conditional E-value: 2.1e-09
   TIGR02824  12 pevlelseaplpelkagevlikvaAaGvNrpDvlQraGkYppppgaseilGLEvaGevvavgeevskfkvGdrvca 87 
                 ++ l+++++++  +k+gev++++aA+ +   D     G+ p       ilG E aG+v +vg +v++f+vGd+v+ 
  MMETSP1137-20121227|6876_1  44 KQPLKMVTVTVAPPKEGEVRVRMAAVALCHTDAYTLGGSDP-EGLFPAILGHEGAGIVESVGPGVTDFEVGDHVIP 118
                 567999999************************99888744.445789*************************985 PP

  == domain 2    score: 22.5 bits;  conditional E-value: 2.9e-08
   TIGR02824  76 vskfkvGdrvcaLvagGgyaeyvvveakqvlpvpeglslveaAalpEtffTvwsnlfelaklkagetvLihggasGiGttaiqlakalgakvlvtag.sdekleaaekLGadvainyreed.FvevvkeetegkGvdvilDivgg.syleknlkalakd.Grlvliall 240
                 ++  + G  +   +    ++ey v +a  + +vp+   l +   l   + T w ++ ++a++++g t+ + g  + +G + i   k +ga+ ++++    +kle a++ Ga+ ++n ++++  +++v   +++ Gvd  +D+ g+ + ++  l++  +  G  v+i++ 
  MMETSP1137-20121227|6876_1 156 SRFTHEGKPIYHFMGTSCFSEYSVLHAVSLAKVPKTAPLDKICLLGCGISTGWGAVANTAQVESGATAAVFG-LGAVGLAVIEALKLAGASRIIAVDlLPHKLELAKQWGATDVVNPKDHEkPIQQVIVGMTEFGVDYSFDCTGSvEVMRAALECSHRGwGTSVVIGVA 323
                 333567888999999999****************************************************97.5679999999999999887777762689***************887652456666666678*******9997245555556554433666777665 PP

>> TIGR02822  adh_fam_2: zinc-binding alcohol dehydrogenase family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.9   0.5   9.4e-15   3.5e-12      13     111 ..      45     142 ..      28     160 .. 0.92
   2 !    4.8   0.1    0.0074       2.8     120     219 ..     173     274 ..     164     290 .. 0.77

  Alignments for each domain:
  == domain 1    score: 43.9 bits;  conditional E-value: 9.4e-15
   TIGR02822  13 galrlveeevprpgegellvrvracgvcrtdlhvsegdlpvhrervipghevvgevveagaaegefavgdrvgiawlrrtcgvcrycrrgaenlcpasr 111
                  +l++v+ +v  p ege+ vr++a  +c td +   g  p      i ghe  g v ++g +  +f+vgd v i+  +  cg c++c+r   nlc + r
  MMETSP1137-20121227|6876_1  45 QPLKMVTVTVAPPKEGEVRVRMAAVALCHTDAYTLGGSDPEGLFPAILGHEGAGIVESVGPGVTDFEVGDHV-IPCYQAYCGDCQFCKRPRINLCTSVR 142
                 699*************************************999999*************************9.8999999***************9876 PP

  == domain 2    score: 4.8 bits;  conditional E-value: 0.0074
   TIGR02822 120 gyaeyttvpaafayrlptgyadeelapllcagiigyrallr.aelpeggrlglygfggsa.hltaqvalaqgaevhvltrgaaarklalalgaasaqgaadr 219
                  ++ey+ + a    ++p     ++++ l c    g+ a+   a++  g    ++g+g     ++  + la  +++  +   +   +la + ga+ + + +d+
  MMETSP1137-20121227|6876_1 173 CFSEYSVLHAVSLAKVPKTAPLDKICLLGCGISTGWGAVANtAQVESGATAAVFGLGAVGlAVIEALKLAGASRIIAVDLLPHKLELAKQWGATDVVNPKDH 274
                 57888888888888888887777777666766689999876257788888999*9997541345567889889999999999999999999*9999888775 PP

>> TIGR02817  adh_fam_1: zinc-binding alcohol dehydrogenase family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.0   0.0   3.3e-09   1.2e-06      10      87 ..      40     117 ..      33     129 .. 0.90
   2 !    8.1   0.0   0.00094      0.35     100     224 ..     176     297 ..     166     312 .. 0.73

  Alignments for each domain:
  == domain 1    score: 26.0 bits;  conditional E-value: 3.3e-09
   TIGR02817  10 pieeeealvdielakPkpkgrdllvevkavsvnPvdtkvrkkvapeaeelkilGwdaaGvvkavGeevtlfkvGdevf 87 
                   e+++ l+ +++++  pk+ +++v + av+    d      + pe   + ilG++ aG+v++vG+ vt f+vGd+v 
  MMETSP1137-20121227|6876_1  40 AFEAKQPLKMVTVTVAPPKEGEVRVRMAAVALCHTDAYTLGGSDPEGLFPAILGHEGAGIVESVGPGVTDFEVGDHVI 117
                 556778888899999999999******************************************************995 PP

  == domain 2    score: 8.1 bits;  conditional E-value: 0.00094
   TIGR02817 100 efhlvderivgkkPkslsfaeaaalPltaitawellfdrlkieedvagekralliiGaaGGvgsiliqlarqlteltviatasraesqewvkelGahavi...dhskplkaqleklkleevsyvislt 224
                 e+ ++ +   +k Pk+   ++ + l     t w  + +  ++e+   g+++    + + G vg  +i  ++     ++ia    +   e +k+ Ga  v+   dh kp+++ +  ++   v+y +  t
  MMETSP1137-20121227|6876_1 176 EYSVLHAVSLAKVPKTAPLDKICLLGCGISTGWGAVANTAQVES---GATA---AVFGLGAVGLAVIEALKLAGASRIIAVDLLPHKLELAKQWGATDVVnpkDHEKPIQQVIVGMTEFGVDYSFDCT 297
                 55555555566666666666666666666666666666655553...2333...3456678888999999999999***********************96667******999888877777777666 PP

>> TIGR01751  crot-CoA-red: crotonyl-CoA reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   1.8   2.4e-06   0.00088      80     111 ..      91     121 ..      83     287 .. 0.61

  Alignments for each domain:
  == domain 1    score: 15.9 bits;  conditional E-value: 2.4e-06
   TIGR01751  80 iiGsdasGvvlrvGegvkrvkvGDevvvsclq 111
                 i G +++G+v  vG+gv+ ++vGD+v+  c q
  MMETSP1137-20121227|6876_1  91 ILGHEGAGIVESVGPGVTDFEVGDHVIP-CYQ 121
                 88***********************984.333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (409 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       142  (0.0346173); expected 82.0 (0.02)
Passed bias filter:                      117  (0.0285227); expected 82.0 (0.02)
Passed Vit filter:                        22  (0.00536324); expected 4.1 (0.001)
Passed Fwd filter:                        11  (0.00268162); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.47u 0.16s 00:00:00.63 Elapsed: 00:00:00.50
# Mc/sec: 1079.67
//
Query:       MMETSP1137-20121227|6877_1  [L=472]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (472 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       127  (0.0309605); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.15s 00:00:00.48 Elapsed: 00:00:00.57
# Mc/sec: 1074.12
//
Query:       MMETSP1137-20121227|6879_1  [L=458]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (458 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        92  (0.0224281); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.16s 00:00:00.49 Elapsed: 00:00:00.52
# Mc/sec: 1162.52
//
Query:       MMETSP1137-20121227|6880_1  [L=229]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (229 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        88  (0.0214529); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.16s 00:00:00.38 Elapsed: 00:00:00.36
# Mc/sec: 839.60
//
Query:       MMETSP1137-20121227|6881_1  [L=208]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (208 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        77  (0.0187713); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.14s 00:00:00.34 Elapsed: 00:00:00.47
# Mc/sec: 584.12
//
Query:       MMETSP1137-20121227|6882_1  [L=1039]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
          0 1204.4  21.5          0 1201.2  14.9    1.9  1  TIGR03346 chaperone_ClpB: ATP-dependent chaperone protein ClpB
   3.8e-232  770.9  17.7   1.5e-231  768.9  12.3    1.8  1  TIGR03345 VI_ClpV1: type VI secretion ATPase, ClpV1 family
   6.7e-224  743.1   0.0   1.3e-116  388.4   0.1    2.1  2  TIGR02639 ClpA: ATP-dependent Clp protease ATP-binding subunit ClpA
      7e-08   29.3  13.6    1.1e-06   25.4   0.1    3.2  3  TIGR03922 T7SS_EccA: type VII secretion AAA-ATPase EccA
    7.8e-07   25.9   0.2     0.0027   14.2   0.1    2.4  2  TIGR00764 lon_rel: putative ATP-dependent protease
    5.9e-06   23.3   0.1       0.34    7.7   0.0    3.4  3  TIGR00382 clpX: ATP-dependent Clp protease, ATP-binding subunit ClpX
    6.5e-06   23.4   0.5     0.0073   13.4   0.0    3.2  4  TIGR02397 dnaX_nterm: DNA polymerase III, subunit gamma and tau
      1e-05   22.4   0.1      0.017   11.8   0.0    3.5  3  TIGR02928 TIGR02928: orc1/cdc6 family replication initiation protein
    2.4e-05   21.3   1.6       0.32    7.8   0.0    3.9  3  TIGR00635 ruvB: Holliday junction DNA helicase RuvB
    0.00026   17.5   0.1      0.017   11.5   0.0    2.8  2  TIGR02902 spore_lonB: ATP-dependent protease LonB
     0.0003   18.2   0.0       0.39    8.0   0.0    3.3  3  TIGR02640 gas_vesic_GvpN: gas vesicle protein GvpN
    0.00047   17.6   0.0        0.1   10.0   0.0    2.9  2  TIGR03420 DnaA_homol_Hda: DnaA regulatory inactivator Hda
     0.0011   16.5   0.0        0.4    8.1   0.0    3.3  2  TIGR00678 holB: DNA polymerase III, delta' subunit
     0.0022   14.8   9.3     0.0088   12.8   0.0    3.9  5  TIGR00390 hslU: ATP-dependent protease HslVU, ATPase subunit
     0.0052   13.1   8.7      0.026   10.8   0.0    3.1  3  TIGR00763 lon: ATP-dependent protease La
  ------ inclusion threshold ------
      0.014   11.8  14.1      0.023   11.0   9.8    1.2  1  TIGR03319 YmdA_YtgF: conserved hypothetical protein YmdA/YtgF
      0.044   11.2   2.0        0.9    7.0   0.0    2.9  3  TIGR01351 adk: adenylate kinases
      0.065   11.0   0.0      0.065   11.0   0.0    3.6  3  TIGR03499 FlhF: flagellar biosynthesis protein FlhF


Domain annotation for each model (and alignments):
>> TIGR03346  chaperone_ClpB: ATP-dependent chaperone protein ClpB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ! 1201.2  14.9         0         0       7     849 ..     132    1003 ..     126    1009 .. 0.96

  Alignments for each domain:
  == domain 1    score: 1201.2 bits;  conditional E-value: 0
   TIGR03346    7 ealaeaqslalekdhqeiepehllkalleqeeglvaallekagvnvealkealekeleklpkvsgag.gevslskelerllekaeklaqklgdefvsvellllalleekeeakkllkeagvtkekleeaieevrggekvtdanaeekyealekyardlteraregkldPviGrdeeirrviqvlsrrtknnPvliGepGvGktaiveGlaqrivngdvPeslknkrllaldlgaliaGakyrGefeerlkavlkevekseGeiilfidelhtlvGaGkaeGaldagnllkPalarGelhciGattldeyrkyiekdaaler.rfqkvlvdePsvedtisilrGlkeryevhhgvritdsalvaaatlshryitdrflPdkaidlideaaarlrmeidskPeeldeldrriiqlkierealkk..ekdeaskerleklekelaeleeesaeleekwkaekekiekvkkikeelekvklelekakregdlakaaelkygklpelekeleeaeekekeekke........................kllkeevteeeiaevvsrwtGiPvskllegerekllkleeelkervvGqdeaveavadavrrsraglsdPnrPigsflflGptGvGktelakalaeflfddeealvridmseymekhsvarliGaPPGyvGyeeGGqlteavrrkpysvvlldevekahpdvfnvllqvlddGrltdgqGrtvdfkntviiltsnlgseaiqelaeeee.aeevkeavmealraefrPeflnrideivvfkalekeeikeiveiqlerlrkrlaerklelelsdaaldllaeagydPvyGarPlkraiqkelenplakkllagevkegdtiavdveddk 849 
                  +a+++    +++ +++  e+ehl  + l +e+g++a++l+ ag++++alk++l+k  +++p +s +  ++vs+  ++ +ll+ a k+++k++d+++s e++l+a+l++k++ ++ lk++g+t+ kl+eaie vrgg+++t++++e+ yeale+y+rdlt++ar gkldPviGrd+e+rr++ vlsrrtknnP+l+GepGvGktai+eGlaqri +gdvPesl++++llald+gal+aGakyrGefeerlkavl+ev+ks Gei+lfide+ht+vGaGk+eG++dagnllkPalarGel+ciGattldeyr+yiekd+  +r  fq+vlv ePsve t +ilrGlkerye+hhgv+i+dsalvaaatls+ryi++rflPdkaidl+deaaa+l+m+ +s+P++lde++rr++q+++e+ +l+k  e+d+ + +rle+le+e a+l e++++l e+w+aek+k+ +v+kikeelek+++e+eka+++++l++aaelky+ lp+l+kel+eae+++  ++ e                         l+k+ v+e +ia +vs+wtG+P+++ll +e+ kll+l+  l++rv Gq eav++va+a++rsraglsdP +Pi+sf+flGptGvGktelakala  lfdde+++vridmseym   sv+rl+GaPPGyvGye+GGqlte+vrr+pysv+l+dev+kahp+vfnvllq+lddGr+tdgqG+tv+fknt+iiltsnlg++ ++  +++ + ++ev+ +v++alr+++rPef+nr+de+v+f++l++e++  i+++ql+ lr+rla+r+++l+++ aald+l++ gy P yGarPlkr++qkele pla++ll+gev++gd + v+v+ d+
  MMETSP1137-20121227|6882_1  132 DAVQRLPATCRRLKQSVAESEHLALSCLADEDGIAAKVLTAAGTSAKALKAELDKFAQRQPTLSRTDtADVSMGGSMLALLRSAAKAKRKFKDKYLSPEHVLIAMLDDKRSGADALKAVGLTEPKLREAIETVRGGRTITTRTPEALYEALERYSRDLTAEARAGKLDPVIGRDDEVRRAMTVLSRRTKNNPILLGEPGVGKTAIAEGLAQRIASGDVPESLRKRKLLALDMGALVAGAKYRGEFEERLKAVLEEVTKSAGEIVLFIDEIHTVVGAGKGEGSMDAGNLLKPALARGELRCIGATTLDEYRQYIEKDPVRARaAFQQVLVREPSVEATTAILRGLKERYELHHGVSISDSALVAAATLSERYISERFLPDKAIDLVDEAAAKLKMDATSRPQALDEVNRRLLQVQMEEISLRKdaERDSRASKRLEALEAEEARLIEKQEALMERWEAEKDKMGRVQKIKEELEKTNMEIEKAEQAYELNRAAELKYSVLPQLQKELAEAEANAGGSEAEgsaqdavgrasrgvidddgdgddaPLMKTLVEEADIAAIVSQWTGVPLTRLLRSESTKLLELDAALARRVTGQGEAVHVVAEAIQRSRAGLSDPTKPIASFMFLGPTGVGKTELAKALAVNLFDDESSMVRIDMSEYMSAESVSRLVGAPPGYVGYEQGGQLTEQVRRRPYSVILFDEVDKAHPEVFNVLLQLLDDGRVTDGQGKTVNFKNTIIILTSNLGAQEVLAGEGDPTrQSEVRLKVLDALRQRYRPEFINRLDEVVIFNPLSREQLGPIAQLQLTALRSRLASRSISLHVTPAALDALVDLGYSPEYGARPLKRVLQKELEAPLARALLSGEVSDGDDVIVKVDLDS 1003
                  566666677788889999*********************************************987659*********************************************************************************************************************************************************************************************************************************************************99945**************************************************************************************************94456666779***************************************************************************9998654333222233445566667777777777777*******************************************************************************************************************************************************************************************************9998888776999***********************************************************************************************************999987554 PP

>> TIGR03345  VI_ClpV1: type VI secretion ATPase, ClpV1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  768.9  12.3  6.8e-234  1.5e-231      11     839 ..     136     988 ..     127    1001 .. 0.91

  Alignments for each domain:
  == domain 1    score: 768.9 bits;  conditional E-value: 6.8e-234
   TIGR03345  11 kaaalavarghsevelehlllklleeedsdlaeilkelkvdleelkaelaraleklkk...gnsrvpalskelvelleeawllaslelgeervrsgalllalleeaelrallssvskelekiev..eelkeklealveesaeaeeaekeasaaaeakaaakesaLdkytvdltaqAregkiDpvlgRdeeirqliDiLlRRrqnnPiltGeaGvGktAvveglAlriaagdvPealrevellsLDlgllqAGAsvkGeFekRlksvidevkasekpiilFiDeaHtliGaGgqaGqgDaanllkPaLARGelrtiaAttWaeykkyiekDaALtR.RFqvvkveePdeekaiemlRglakvlekhhgveildeavkaavelsaRYisgRqLPDkavsllDtAcarvalsqkatPaeledlekeiealeaelellereeelgaeeeerlaeleeelaaleeelaalearwekekelveeikelreklee....................................eeeeeaeeee...aleaelaeleaelaelq...geeplvsaevdeevvaevvadWtGiPvgrlvkdeiekvleleekleervvGqdealeaiaerirtarAgledpkkPlgvFllvGpsGvGktetalalAellyGgeqnlitinmsefqeaHtvstLkGsPPGYvGyGeGGvLteAvRrkPysvvLLDevekAhpdvlelFyqvFDkGvleDgeGreidfkntvilltsnvgsdliaelaadeetapeaealaealrpeLlkvfkpAllgRl.evvpylplsdevlaeivelkleriakrlkenykaeleydealveeivarctevesGaRaidaileqtllpelseelLekl 839
                 +  a++ + ++s  e ehl l+ l++ed+ +a++l++++ ++++lkael++  ++ ++    +++  ++  +++ ll++a + a+ +++++ ++  ++l+a+l++++      s +++l+++     +l+e++e++  + + ++            + +a  +aL++y+ dlta+Ar+gk+Dpv+gRd+e+r+ + +L RR +nnPil+Ge+GvGktA+ eglA+ria+gdvPe+lr+ +ll+LD+g+l AGA  +GeFe+Rlk+v++ev++s+  i+lFiDe+Ht++GaG  +G+ Da nllkPaLARGelr i+Att  ey++yiekD+  +R  Fq v v+eP++e+++++lRgl++++e hhgv+i+d+a++aa++ls+RYis+R LPDka++l+D A+a++++  ++ P++l+++++++ ++++e   l++++e +++ ++rl++le+e+a+l e+++al +rwe+ek+ + ++++++e+le+                                    +   +a  +e   +++ ++ ++++ + + +    ++pl+++ v+e+ +a++v++WtG+P+ rl+++e +k+lel++ l++rv+Gq ea++ +ae+i+ +rAgl+dp+kP++ F+++Gp GvGkte a alA +l+  e+ ++ i+mse+  a +vs+L+G+PPGYvGy +GG Lte vRr+Pysv+L Dev+kAhp+v ++  q+ D G ++Dg+G++++fknt+i+ltsn+g++++ +   d+++   ++++  ++ ++L+++++p ++ Rl evv + pls+e+l  i++l+l  +++rl+++  ++l+++ a+++++v+   + e GaR ++++l+++l + l+++lL+  
  MMETSP1137-20121227|6882_1 136 RLPATCRRLKQSVAESEHLALSCLADEDGIAAKVLTAAGTSAKALKAELDKFAQRQPTlsrTDTADVSMGGSMLALLRSA-AKAKRKFKDKYLSPEHVLIAMLDDKR------SGADALKAVGLtePKLREAIETVRGGRTITT-----------RTPEALYEALERYSRDLTAEARAGKLDPVIGRDDEVRRAMTVLSRRTKNNPILLGEPGVGKTAIAEGLAQRIASGDVPESLRKRKLLALDMGALVAGAKYRGEFEERLKAVLEEVTKSAGEIVLFIDEIHTVVGAGKGEGSMDAGNLLKPALARGELRCIGATTLDEYRQYIEKDPVRARaAFQQVLVREPSVEATTAILRGLKERYELHHGVSISDSALVAAATLSERYISERFLPDKAIDLVDEAAAKLKMDATSRPQALDEVNRRLLQVQMEEISLRKDAERDSRASKRLEALEAEEARLIEKQEALMERWEAEKDKMGRVQKIKEELEKtnmeiekaeqayelnraaelkysvlpqlqkelaeaeA---NAGGSEaegSAQDAVGRASRGVIDDDgdgDDAPLMKTLVEEADIAAIVSQWTGVPLTRLLRSESTKLLELDAALARRVTGQGEAVHVVAEAIQRSRAGLSDPTKPIASFMFLGPTGVGKTELAKALAVNLFDDESSMVRIDMSEYMSAESVSRLVGAPPGYVGYEQGGQLTEQVRRRPYSVILFDEVDKAHPEVFNVLLQLLDDGRVTDGQGKTVNFKNTIIILTSNLGAQEVLAGEGDPTR---QSEVRLKVLDALRQRYRPEFINRLdEVVIFNPLSREQLGPIAQLQLTALRSRLASR-SISLHVTPAALDALVDLGYSPEYGARPLKRVLQKELEAPLARALLSGE 988
                 55578999999999***********************************9988876651004444455556777777766.67999******************995......4555555554400455555555444433332...........24566789****************************************************************************************************************************************************************************55*****************************************************************************************************************************************************999***************************999876531...22222222455555666666555444111578*********************************************************************************************************************************************************************************************************999999888...55666778899************956999*************************99.9*******************************************9864 PP

>> TIGR02639  ClpA: ATP-dependent Clp protease ATP-binding subunit ClpA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  388.4   0.1  5.6e-119  1.3e-116      15     463 ..     140     580 ..     132     591 .. 0.88
   2 !  352.3   0.0  4.7e-108  1.1e-105     417     733 ..     678     998 ..     664     999 .. 0.95

  Alignments for each domain:
  == domain 1    score: 388.4 bits;  conditional E-value: 5.6e-119
   TIGR02639  15 eakkrrhefvtlehlllalledeeal..eileecgadvellkkklekyleeelekleeeeeaepeqtvglqrvlerallhvksaekkevdigdllvalleeeesyasyllkkqgisrldilelisheiskdekkeeeeeeekeeeekeekkekealekytvdltekakkgkidPliGredelertiqvLcrrkknnPllvGepGvGktaiveGLakriaedkvPealknakiysLdlgsllaGtkyrGdfeerlkevveeiekeeda.ilfiDeihtivgagatsggsldasnlLkPalasGkirciGsttyeeykkifekdkaLsr.rfqkidveePskeetvkilkglkekyeefhkvkysdealeaavelsakyindrfLPDkaiDviDeaGaalrlkekakkkak..vsvkdieevvakiakipeksvssddkekLknlekeLkkkifGqd 463
                 ++++ ++     ehl l  l+de+ +  ++l++ g++ ++lk++l+k+ +++ ++l+ +++a++    ++  +l +a++  ++ + k+++ +++l+a+l++++s a  +lk  g++  ++ e i      +  + ++     +      ++  eale+y+ dlt++a+ gk+dP+iGr+de+ r + vL+rr+knnP+l+GepGvGktai+eGLa+ria+++vPe+l++ k+ +Ld+g+l+aG+kyrG+feerlk+v+ee++k+  + +lfiDeiht+vgag  ++gs+da nlLkPala G++rciG+tt +ey++++ekd   +r  fq++ v+ePs e t++il+glke+ye +h v+ sd+al aa++ls++yi++rfLPDkaiD++Dea a+l++ ++++++a   v+ + ++  + +i+   +++ +s  +++L+ le e  + i  q+
  MMETSP1137-20121227|6882_1 140 TCRRLKQSVAESEHLALSCLADEDGIaaKVLTAAGTSAKALKAELDKFAQRQ-PTLSRTDTADVSMGGSMLALLRSAAKAKRKFKDKYLSPEHVLIAMLDDKRSGA-DALKAVGLTEPKLREAIETVRGGRTITTRT-----P------EALYEALERYSRDLTAEARAGKLDPVIGRDDEVRRAMTVLSRRTKNNPILLGEPGVGKTAIAEGLAQRIASGDVPESLRKRKLLALDMGALVAGAKYRGEFEERLKAVLEEVTKSAGEiVLFIDEIHTVVGAGK-GEGSMDAGNLLKPALARGELRCIGATTLDEYRQYIEKDPVRARaAFQQVLVREPSVEATTAILRGLKERYELHHGVSISDSALVAAATLSERYISERFLPDKAIDLVDEAAAKLKMDATSRPQALdeVNRRLLQVQMEEISLRKDAERDSRASKRLEALEAEEARLIEKQE 580
                 566667777889*****999999866559****************9987655.566666899999************************************99966.589******999999887655544222222.....2......345689***********************************************************************************************************99877589***********96.7889**********************************9999945***********************************************************************9999888653366666666666666666666666777778888777666665555 PP

  == domain 2    score: 352.3 bits;  conditional E-value: 4.7e-108
   TIGR02639 417 kakvsvkdieevvakiakipeksvssddkekLknlekeLkkkifGqdeaiealvkaikrsraGlkeenkPvgsflfvGptGvGktelakqLaeel...gvellrfDmseymekhtvsrliGsPpGyvGfeeGGlLteavrknPyavlLlDeiekahpDilnilLqvmDyatLtDnsGrkadfrnvilimtsnaGakeaskakiGfa.eekseeksekaikklfsPefrnrldaiikfedlseevlekivkkeleelekkLaekkveleleddaikylaekgydeefGarelkrvieeeikkkladeiLfGklkkGgevkve 733
                 k+ v++ di+++v++ + +p +++  ++++kL +l+  L +++ Gq ea++ +++ai+rsraGl+++ kP++sf+f GptGvGktelak+La +l     +++r+Dmseym   +vsrl+G+PpGyvG+e+GG+Lte vr++Py+v+L+De++kahp+++n+lLq++D +++tD +G+ ++f+n+i+i+tsn+Ga+e+ + +   + +++++ k+ +a+++ + Pef+nrld+++ f++ls+e+l  i++ +l+ l+++La+++++l+++  a+  l++ gy++e+Gar+lkrv+++e++ +la+ +L G++ +G  v v+
  MMETSP1137-20121227|6882_1 678 KTLVEEADIAAIVSQWTGVPLTRLLRSESTKLLELDAALARRVTGQGEAVHVVAEAIQRSRAGLSDPTKPIASFMFLGPTGVGKTELAKALAVNLfddESSMVRIDMSEYMSAESVSRLVGAPPGYVGYEQGGQLTEQVRRRPYSVILFDEVDKAHPEVFNVLLQLLDDGRVTDGQGKTVNFKNTIIILTSNLGAQEVLAGEGDPTrQSEVRLKVLDALRQRYRPEFINRLDEVVIFNPLSREQLGPIAQLQLTALRSRLASRSISLHVTPAALDALVDLGYSPEYGARPLKRVLQKELEAPLARALLSGEVSDGDDVIVK 998
                 567999***************************************************************************************99655578************************************************************************************************9876544330334448999*****************************************************************************************************9997 PP

>> TIGR03922  T7SS_EccA: type VII secretion AAA-ATPase EccA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.4   0.1   4.7e-09   1.1e-06     301     396 ..     309     413 ..     306     428 .. 0.79
   2 ?   -0.2   4.4      0.27        61     198     295 ..     509     610 ..     447     627 .. 0.72
   3 !    7.2   0.0    0.0015      0.34     296     333 ..     731     769 ..     704     773 .. 0.79

  Alignments for each domain:
  == domain 1    score: 25.4 bits;  conditional E-value: 4.7e-09
   TIGR03922 301 RaerGlavaqrskHlllaGPPGtGkttiArvvakiyaGlgv...lrkpevrEvsRadlig..eyigeseaktnelid....kaLggvlFlDEayaLvekrdgakd 396
                 R+++ +    + +  +l+G PG Gkt+iA+ +a+ +a   v   lrk ++       l++  +y ge e++ +++++    +a + vlF+DE++++v  ++g++ 
  MMETSP1137-20121227|6882_1 309 RRAMTVLSRRTKNNPILLGEPGVGKTAIAEGLAQRIASGDVpesLRKRKLLALDMGALVAgaKYRGEFEERLKAVLEevtkSAGEIVLFIDEIHTVVGAGKGEGS 413
                 555555556677889******************998877666669********99999954489***999998888733324666789*********99777655 PP

  == domain 2    score: -0.2 bits;  conditional E-value: 0.27
   TIGR03922 198 edeAqelLeklyan.dpetekvkeALadpsyrlvltdaekieaRtDp.WDpssaksra..eledaaaaerkaklLaEaeaeLakqiGlervkeqvaalkssv 295
                  d+A  l++++ a+ + + +   +AL++ + rl   + e+i  R D   D+ + k  +  e+e+a+  e++  l+   eae +k+  ++++ke++++ + ++
  MMETSP1137-20121227|6882_1 509 PDKAIDLVDEAAAKlKMDATSRPQALDEVNRRLLQVQMEEISLRKDAeRDSRASKRLEalEAEEARLIEKQEALMERWEAEKDKMGRVQKIKEELEKTNMEI 610
                 488888888887762456677789**********************72455555554512444455558877777778999999999999999988655443 PP

  == domain 3    score: 7.2 bits;  conditional E-value: 0.0015
   TIGR03922 296 evalvRaerGlavaqrs.kHlllaGPPGtGkttiArvva 333
                 + a+ R + Gl+ +++     +++GP G Gkt +A+++a
  MMETSP1137-20121227|6882_1 731 AEAIQRSRAGLSDPTKPiASFMFLGPTGVGKTELAKALA 769
                 4567788888887766426789***************98 PP

>> TIGR00764  lon_rel: putative ATP-dependent protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.1   1.2e-05    0.0027      17      62 ..     298     345 ..     285     405 .. 0.84
   2 !    9.2   0.0   0.00038     0.087       5      64 ..     705     775 ..     702     800 .. 0.80

  Alignments for each domain:
  == domain 1    score: 14.2 bits;  conditional E-value: 1.2e-05
   TIGR00764  17 idqviGqdeavevikkaa..kqkrnvlliGePGvGksmlakamaellp 62 
                 +d viG+d+ v+   +    + k n +l+GePGvGk+ +a+ +a+ ++
  MMETSP1137-20121227|6882_1 298 LDPVIGRDDEVRRAMTVLsrRTKNNPILLGEPGVGKTAIAEGLAQRIA 345
                 799*******9987776511556789**************99997665 PP

  == domain 2    score: 9.2 bits;  conditional E-value: 0.00038
   TIGR00764   5 etteeipvPerlidqviGqdeavevikkaakqkr...........nvlliGePGvGksmlakamaellpke 64 
                 e+t+ ++    l  +v Gq eav+v+ +a+++ r             +++G  GvGk+ laka+a  l ++
  MMETSP1137-20121227|6882_1 705 ESTKLLELDAALARRVTGQGEAVHVVAEAIQRSRaglsdptkpiaSFMFLGPTGVGKTELAKALAVNLFDD 775
                 77888888889999****************9998333333333333689***************9766554 PP

>> TIGR00382  clpX: ATP-dependent Clp protease, ATP-binding subunit ClpX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.7   0.0    0.0059       1.4     117     194 ..     320     404 ..     306     413 .. 0.65
   2 !    7.7   0.0    0.0015      0.34     118     141 ..     749     772 ..     679     779 .. 0.73
   3 !    5.7   0.0    0.0059       1.3     294     380 ..     892     974 ..     867     991 .. 0.86

  Alignments for each domain:
  == domain 1    score: 5.7 bits;  conditional E-value: 0.0059
   TIGR00382 117 ksnilliGptGsGktllaqtlakel...dvpfaiadattl........teaGyvGedvenillkllqaadydv.ekaekGiiyideidki 194
                 k n +l+G  G Gkt +a+ la+++   dvp ++     l        + a y Ge     + + l+a   +v + a   +++idei  +
  MMETSP1137-20121227|6882_1 320 KNNPILLGEPGVGKTAIAEGLAQRIasgDVPESLRKRKLLaldmgalvAGAKYRGE-----FEERLKAVLEEVtKSAGEIVLFIDEIHTV 404
                 78999*****************9986667997765443331110000134445554.....33333444344404455666788888766 PP

  == domain 2    score: 7.7 bits;  conditional E-value: 0.0015
   TIGR00382 118 snilliGptGsGktllaqtlakel 141
                 +  +++GptG Gkt la++la +l
  MMETSP1137-20121227|6882_1 749 ASFMFLGPTGVGKTELAKALAVNL 772
                 456789**************9765 PP

  == domain 3    score: 5.7 bits;  conditional E-value: 0.0059
   TIGR00382 294 pedlvkfGlipefiGrlpvlatlekldeealvailtkpknalvkqyqkllkldevelefeeealkaiakkalerktGarglrsivee 380
                   d ++    pefi rl  +  ++ l++e+l  i +    al     + l   ++ l+ ++ al+a+++   + + Gar l+ ++++
  MMETSP1137-20121227|6882_1 892 VLDALRQRYRPEFINRLDEVVIFNPLSREQLGPIAQLQLTALR----SRLASRSISLHVTPAALDALVDLGYSPEYGARPLKRVLQK 974
                 5577777888*********************999988777774....5567789***************************998865 PP

>> TIGR02397  dnaX_nterm: DNA polymerase III, subunit gamma and tau
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.1   0.0    0.0054       1.2       9      60 ..     294     344 ..     287     353 .. 0.77
   2 ?   -3.5   0.5       4.6     1e+03     286     286 ..     582     582 ..     514     638 .. 0.48
   3 !   13.4   0.0   3.2e-05    0.0073      16      60 ..     720     772 ..     717     781 .. 0.74
   4 ?   -1.4   0.0         1   2.3e+02     117     142 ..     820     845 ..     811     847 .. 0.86

  Alignments for each domain:
  == domain 1    score: 6.1 bits;  conditional E-value: 0.0054
   TIGR02397   9 rPktFedliGqehvvktLknaikknkiahayLfsGprGvGKTsiArilAkal 60 
                 r  +++ +iG++  v+  + ++ +++ ++  ++ G  GvGKT+iA  lA+ +
  MMETSP1137-20121227|6882_1 294 RAGKLDPVIGRDDEVRRAM-TVLSRRTKNNPILLGEPGVGKTAIAEGLAQRI 344
                 6666777788776666544.4567888899999************9999876 PP

  == domain 2    score: -3.5 bits;  conditional E-value: 4.6
   TIGR02397 286 l 286
                 l
  MMETSP1137-20121227|6882_1 582 L 582
                 1 PP

  == domain 3    score: 13.4 bits;  conditional E-value: 3.2e-05
   TIGR02397  16 liGqehvvktLknaikknkia........hayLfsGprGvGKTsiArilAkal 60 
                 ++Gq   v+++ +ai++++           +++f Gp GvGKT +A+ lA  l
  MMETSP1137-20121227|6882_1 720 VTGQGEAVHVVAEAIQRSRAGlsdptkpiASFMFLGPTGVGKTELAKALAVNL 772
                 6777777777777777777542222222258******************9765 PP

  == domain 4    score: -1.4 bits;  conditional E-value: 1
   TIGR02397 117 kykvYiiDEvhmLsksafnaLLKtlE 142
                  y v + DEv     + fn+LL  l 
  MMETSP1137-20121227|6882_1 820 PYSVILFDEVDKAHPEVFNVLLQLLD 845
                 589999****************9986 PP

>> TIGR02928  TIGR02928: orc1/cdc6 family replication initiation protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.8   0.0   7.3e-05     0.017      16      65 ..     300     345 ..     295     351 .. 0.84
   2 ?   -0.7   0.0      0.46     1e+02     115     145 ..     378     409 ..     374     415 .. 0.82
   3 !    5.8   0.0    0.0049       1.1      42      67 ..     750     775 ..     705     874 .. 0.81

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 7.3e-05
   TIGR02928  16 rivhRdeqieelakalkpilrgsrpsnvliyGktGtGKtavtkkvlkele 65 
                  + +Rd+++++ ++ l+     ++ +n ++ G++G+GKta+++ + ++++
  MMETSP1137-20121227|6882_1 300 PVIGRDDEVRRAMTVLSR----RTKNNPILLGEPGVGKTAIAEGLAQRIA 345
                 567999999998887765....6667889*************99998875 PP

  == domain 2    score: -0.7 bits;  conditional E-value: 0.46
   TIGR02928 115 evfeelvkeleeredsliivLDEiDklv.kke 145
                 e  + + +e+ ++ + +++ +DEi  +v  ++
  MMETSP1137-20121227|6882_1 378 ERLKAVLEEVTKSAGEIVLFIDEIHTVVgAGK 409
                 66788999****************99986555 PP

  == domain 3    score: 5.8 bits;  conditional E-value: 0.0049
   TIGR02928  42 nvliyGktGtGKtavtkkvlkeleea 67 
                 + +  G+tG+GKt  +k++  +l ++
  MMETSP1137-20121227|6882_1 750 SFMFLGPTGVGKTELAKALAVNLFDD 775
                 56789***********9998776554 PP

>> TIGR00635  ruvB: Holliday junction DNA helicase RuvB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.1   0.5    0.0023      0.53      33      56 ..     323     346 ..     305     409 .. 0.57
   2 !    7.8   0.0    0.0014      0.32      31      54 ..     749     772 ..     724     782 .. 0.86
   3 ?   -2.3   0.0       1.7   3.9e+02      83     111 ..     822     850 ..     817     864 .. 0.84

  Alignments for each domain:
  == domain 1    score: 7.1 bits;  conditional E-value: 0.0023
   TIGR00635  33 vllyGPPGlGkttlakiiakelgv 56 
                  +l G PG+Gkt++a+ +a+ + +
  MMETSP1137-20121227|6882_1 323 PILLGEPGVGKTAIAEGLAQRIAS 346
                 468899999999999888876643 PP

  == domain 2    score: 7.8 bits;  conditional E-value: 0.0014
   TIGR00635  31 dhvllyGPPGlGkttlakiiakel 54 
                    ++ GP G+Gkt lak +a +l
  MMETSP1137-20121227|6882_1 749 ASFMFLGPTGVGKTELAKALAVNL 772
                 567899************999876 PP

  == domain 3    score: -2.3 bits;  conditional E-value: 1.7
   TIGR00635  83 dvlfiDeihrlskaveellypamedfkld 111
                 +v+  De+ + +++v ++l + ++d ++ 
  MMETSP1137-20121227|6882_1 822 SVILFDEVDKAHPEVFNVLLQLLDDGRVT 850
                 68899******************998775 PP

>> TIGR02902  spore_lonB: ATP-dependent protease LonB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.5   0.0   7.5e-05     0.017      51     104 ..     285     338 ..     280     401 .. 0.86
   2 ?    2.4   0.0     0.044       9.9     171     204 ..     816     849 ..     724     851 .. 0.56

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 7.5e-05
   TIGR02902  51 lteplseksrpksfdeiiGqeeGikalkaalcGpnpqhviiyGppGvGktaaar 104
                  ++ l+ ++r  ++d +iG+++ ++   + l     +  i+ G pGvGkta a 
  MMETSP1137-20121227|6882_1 285 YSRDLTAEARAGKLDPVIGRDDEVRRAMTVLSRRTKNNPILLGEPGVGKTAIAE 338
                 5778999********************************************885 PP

  == domain 2    score: 2.4 bits;  conditional E-value: 0.044
   TIGR02902 171 vtkahGGvlfideiGelhpvqmnkllkvledrkv 204
                 v +    v++ de+ + hp   n ll++l+d +v
  MMETSP1137-20121227|6882_1 816 VRRRPYSVILFDEVDKAHPEVFNVLLQLLDDGRV 849
                 4444455667788888888888888888888766 PP

>> TIGR02640  gas_vesic_GvpN: gas vesicle protein GvpN
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.0      0.51   1.2e+02      24      44 ..     324     343 ..     305     348 .. 0.77
   2 !    8.0   0.0    0.0017      0.39      23      44 ..     750     771 ..     729     791 .. 0.87
   3 ?    5.2   0.0     0.012       2.7     107     132 ..     822     847 ..     807     869 .. 0.77

  Alignments for each domain:
  == domain 1    score: -0.1 bits;  conditional E-value: 0.51
   TIGR02640  24 vhlrGPaGtGktslalhvakk 44 
                 + l G  G Gkt++a  +a++
  MMETSP1137-20121227|6882_1 324 I-LLGEPGVGKTAIAEGLAQR 343
                 4.66888*********99986 PP

  == domain 2    score: 8.0 bits;  conditional E-value: 0.0017
   TIGR02640  23 pvhlrGPaGtGktslalhvakk 44 
                 +  + GP+G Gkt la ++a +
  MMETSP1137-20121227|6882_1 750 SFMFLGPTGVGKTELAKALAVN 771
                 45699*************9965 PP

  == domain 3    score: 5.2 bits;  conditional E-value: 0.012
   TIGR02640 107 ftlvydefsrskPeannvllsvleek 132
                   +++de  +++Pe+ nvll +l+++
  MMETSP1137-20121227|6882_1 822 SVILFDEVDKAHPEVFNVLLQLLDDG 847
                 35679*****************9986 PP

>> TIGR03420  DnaA_homol_Hda: DnaA regulatory inactivator Hda
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.0     0.025       5.8      31      64 ..     313     346 ..     301     365 .. 0.81
   2 !   10.0   0.0   0.00044       0.1      38      80 ..     748     790 ..     723     800 .. 0.81

  Alignments for each domain:
  == domain 1    score: 4.2 bits;  conditional E-value: 0.025
   TIGR03420  31 elaeakaerllylwGesgsGksHLLqAacaaaee 64 
                  ++++++++   l Ge+g+Gk+ + +++++++++
  MMETSP1137-20121227|6882_1 313 TVLSRRTKNNPILLGEPGVGKTAIAEGLAQRIAS 346
                 3457888888999************999998865 PP

  == domain 2    score: 10.0 bits;  conditional E-value: 0.00044
   TIGR03420  38 erllylwGesgsGksHLLqAacaaaeeagksaiylplkelaql 80 
                   ++ + G++g+Gk+ L +A++ ++ + ++s++ ++++e  ++
  MMETSP1137-20121227|6882_1 748 IASFMFLGPTGVGKTELAKALAVNLFDDESSMVRIDMSEYMSA 790
                 4678999**************************9999998765 PP

>> TIGR00678  holB: DNA polymerase III, delta' subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.0     0.026         6      11      39 ..     317     345 ..     309     356 .. 0.84
   2 !    8.1   0.0    0.0018       0.4      16      41 ..     750     775 ..     742     846 .. 0.86

  Alignments for each domain:
  == domain 1    score: 4.2 bits;  conditional E-value: 0.026
   TIGR00678  11 grlahAlLfaGpeGvGkealaealakall 39 
                 +r ++  ++ G++GvGk+a+ae la+++ 
  MMETSP1137-20121227|6882_1 317 RRTKNNPILLGEPGVGKTAIAEGLAQRIA 345
                 5677778899***************9986 PP

  == domain 2    score: 8.1 bits;  conditional E-value: 0.0018
   TIGR00678  16 AlLfaGpeGvGkealaealakallCe 41 
                 +++f Gp GvGk++la+ala +l+  
  MMETSP1137-20121227|6882_1 750 SFMFLGPTGVGKTELAKALAVNLFDD 775
                 5799****************999865 PP

>> TIGR00390  hslU: ATP-dependent protease HslVU, ATPase subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       2.2   5.1e+02     229     275 ..     157     204 ..     144     234 .. 0.71
   2 ?    2.9   0.0      0.04         9      48      69 ..     321     342 ..     311     348 .. 0.85
   3 ?   -3.8   0.0       4.4     1e+03     247     263 ..     392     408 ..     382     415 .. 0.68
   4 ?    0.4   1.8      0.23        52     188     249 ..     532     594 ..     468     647 .. 0.55
   5 !   12.8   0.0   3.9e-05    0.0088       9      83 ..     715     787 ..     710     799 .. 0.66

  Alignments for each domain:
  == domain 1    score: -2.9 bits;  conditional E-value: 2.2
   TIGR00390 229 eklvdseeikqeavdrveesGiifideidkiakkg.essgadvsreGv 275
                 + l d++ i  + + ++  s   +  e+dk a+++   s++d +   +
  MMETSP1137-20121227|6882_1 157 SCLADEDGIAAKVLTAAGTSAKALKAELDKFAQRQpTLSRTDTADVSM 204
                 56788999999999999999999999******9987777765443333 PP

  == domain 2    score: 2.9 bits;  conditional E-value: 0.04
   TIGR00390  48 knilmiGstGvGkteiarrlak 69 
                  n +++G  GvGkt ia  la+
  MMETSP1137-20121227|6882_1 321 NNPILLGEPGVGKTAIAEGLAQ 342
                 67899************98886 PP

  == domain 3    score: -3.8 bits;  conditional E-value: 4.4
   TIGR00390 247 esGiifideidkiakkg 263
                  + ++fidei  ++  g
  MMETSP1137-20121227|6882_1 392 GEIVLFIDEIHTVVGAG 408
                 45589*****9987655 PP

  == domain 4    score: 0.4 bits;  conditional E-value: 0.23
   TIGR00390 188 peleevdenlqsl.lqnllsdkkkkrklkvkeakkvlieeeaeklvds.eeikqeavdrveesG 249
                   l+ev+  l ++ ++++  +k  +r+ +  +  ++l +eea  l+++ e++ ++   + +++G
  MMETSP1137-20121227|6882_1 532 QALDEVNRRLLQVqMEEISLRKDAERDSRASKRLEALEAEEAR-LIEKqEALMERWEAEKDKMG 594
                 3445555544443123333333344444444445555444443.33320222222222222222 PP

  == domain 5    score: 12.8 bits;  conditional E-value: 3.9e-05
   TIGR00390   9 eldkyiiGqdeakkavaialrnryrrlqleeelkdevvPk.nilmiGstGvGkteiarrlak.la..eaPfikveatkf 83 
                  l + + Gq ea + va a++    r  l++       P    + +G+tGvGkte+a+ la  l   e  +++++ + +
  MMETSP1137-20121227|6882_1 715 ALARRVTGQGEAVHVVAEAIQR--SRAGLSDPT----KPIaSFMFLGPTGVGKTELAKALAVnLFddESSMVRIDMSEY 787
                 6777888899998888888753..355555544....454146779************998413322455666666665 PP

>> TIGR00763  lon: ATP-dependent protease La
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.8   0.0    0.0037      0.84     355     376 ..     324     343 ..     311     349 .. 0.80
   2 ?   -3.5   3.0       2.4   5.5e+02     124     267 ..     562     615 ..     481     644 .. 0.43
   3 !   10.8   0.0   0.00011     0.026     357     449 ..     752     845 ..     741     858 .. 0.75

  Alignments for each domain:
  == domain 1    score: 5.8 bits;  conditional E-value: 0.0037
   TIGR00763 355 ilclvGPPGVGKtSlaksiAka 376
                 i  l G PGVGKt++a+ +A+ 
  MMETSP1137-20121227|6882_1 324 I--LLGEPGVGKTAIAEGLAQR 343
                 4..67************99986 PP

  == domain 2    score: -3.5 bits;  conditional E-value: 2.4
   TIGR00763 124 deevkalseeiletlkeliklsklfreqvetlkalekleepakladlvaaslelkeveekqevleevnvekRLkkvlellkkelelaklqekiakkveeklekeqreylLkeqlkaikkElGeekdkkdelieklkekleelkl 267
                 +++++al +e ++ +++                                                                                            L+e+  a k  +G  ++ k+el ek +  +e+++ 
  MMETSP1137-20121227|6882_1 562 SKRLEALEAEEARLIEKQE-----------------------------------------------------------------------------------------ALMERWEAEKDKMGRVQKIKEEL-EKTNMEIEKAEQ 615
                 2222222222222222222.........................................................................................23333333333333333333333.333333333332 PP

  == domain 3    score: 10.8 bits;  conditional E-value: 0.00011
   TIGR00763 357 clvGPPGVGKtSlaksiAkal...nrkfvrlslGG...lkDvaeikGHRrtYvGal.PGkiiqglkkvktenPlillDEiDKlgssvrGdPasaLLEvLD 449
                 ++ GP GVGKt lak++A  l   +   vr+ +      + v+ + G    YvG    G++ + +++      +il DE+DK + +       +LL +LD
  MMETSP1137-20121227|6882_1 752 MFLGPTGVGKTELAKALAVNLfddESSMVRIDMSEymsAESVSRLVGAPPGYVGYEqGGQLTEQVRRR--PYSVILFDEVDKAHPE----VFNVLLQLLD 845
                 699***************99966567899999875211467788899999999975145666666554..3459999999997653....3556666666 PP

>> TIGR03319  YmdA_YtgF: conserved hypothetical protein YmdA/YtgF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   9.8   9.9e-05     0.023      12     132 ..     498     622 ..     489     644 .. 0.79

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 9.9e-05
   TIGR03319  12 lligyllakkiaekkleeaeeeakkiieeak..keaeakkkealleakeevkklreelekelk..errkelqklekrlkqkeekldrkkeklekkeeelekkekeleekekeleekeeeleellk 132
                 l  +y+ +++  +k ++ ++e+a k+  +a+   +a ++ +  ll+++ e  +lr+++e++ +  +r + l+++e rl +k+e+l ++ e+ ++k  +++k ++ele+++ e+e+ e+ +e   +
  MMETSP1137-20121227|6882_1 498 LSERYISERFLPDKAIDLVDEAAAKLKMDATsrPQALDEVNRRLLQVQMEEISLRKDAERDSRasKRLEALEAEEARLIEKQEALMERWEAEKDKMGRVQKIKEELEKTNMEIEKAEQAYELNRA 622
                 45567777888888899999999998888872245666778899***********9999987622566899*******************************************99987765443 PP

>> TIGR01351  adk: adenylate kinases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   0.0    0.0039       0.9       3      24 ..     324     345 ..     322     358 .. 0.86
   2 ?   -1.7   0.4       1.7   3.9e+02     150     206 ..     543     602 ..     528     607 .. 0.69
   3 ?    2.4   0.0     0.099        23       2      21 ..     751     770 ..     750     778 .. 0.89

  Alignments for each domain:
  == domain 1    score: 7.0 bits;  conditional E-value: 0.0039
   TIGR01351   3 vllGpPGsGKGTqakrlaeklg 24 
                 +llG PG+GK  +a+ la+++ 
  MMETSP1137-20121227|6882_1 324 ILLGEPGVGKTAIAEGLAQRIA 345
                 8***************998754 PP

  == domain 2    score: -1.7 bits;  conditional E-value: 1.7
   TIGR01351 150 dctaellkqReDDtee.vvkkRlevYkeqteplieyYkkkgklve..idaekkieevlke 206
                 ++++e++  R+D +++   +kRle+ +++ + lie  ++ +   e   d++++++++ +e
  MMETSP1137-20121227|6882_1 543 QVQMEEISLRKDAERDsRASKRLEALEAEEARLIEKQEALMERWEaeKDKMGRVQKIKEE 602
                 567788889999766526899***999999999997776666555223444555555554 PP

  == domain 3    score: 2.4 bits;  conditional E-value: 0.099
   TIGR01351   2 lvllGpPGsGKGTqakrlae 21 
                 +++lGp G+GK   ak la 
  MMETSP1137-20121227|6882_1 751 FMFLGPTGVGKTELAKALAV 770
                 79*************99975 PP

>> TIGR03499  FlhF: flagellar biosynthesis protein FlhF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.1     0.054        12     200     221 ..     322     343 ..     275     352 .. 0.83
   2 ?   -1.8   6.9       2.3   5.2e+02      73     166 ..     544     622 ..     488     657 .. 0.40
   3 ?   11.0   0.0   0.00029     0.065     200     217 ..     750     766 ..     706     782 .. 0.70

  Alignments for each domain:
  == domain 1    score: 3.6 bits;  conditional E-value: 0.054
   TIGR03499 200 viaLvGptGvGKTTTlAKLAar 221
                   +L+G +GvGKT     LA+r
  MMETSP1137-20121227|6882_1 322 NPILLGEPGVGKTAIAEGLAQR 343
                 458*********9765556665 PP

  == domain 2    score: -1.8 bits;  conditional E-value: 2.3
   TIGR03499  73 aepkklskaeekeekekeaeekaaeaaqeaekkleeae........eelrkelkalkellekqlselaleeedperakllkklleagvseelarelleklke 166
                  + ++ s  +++e++++ +++ +a +a+ea+  +++++        ++ +  ++++ke lek++ e+                       e a++ +e  ++
  MMETSP1137-20121227|6882_1 544 VQMEEISLRKDAERDSRASKRLEALEAEEARLIEKQEAlmerweaeKDKMGRVQKIKEELEKTNMEI-----------------------EKAEQAYELNRA 622
                 2222222111111111111111111111111111111133344444333444444444444444443.......................332222222222 PP

  == domain 3    score: 11.0 bits;  conditional E-value: 0.00029
   TIGR03499 200 viaLvGptGvGKTTTlAK 217
                  ++++GptGvGKT  lAK
  MMETSP1137-20121227|6882_1 750 SFMFLGPTGVGKT-ELAK 766
                 689*********8.4555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1039 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       323  (0.0787421); expected 82.0 (0.02)
Passed bias filter:                      147  (0.0358362); expected 82.0 (0.02)
Passed Vit filter:                        40  (0.00975134); expected 4.1 (0.001)
Passed Fwd filter:                        18  (0.0043881); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              18  [number of targets reported over threshold]
# CPU time: 1.23u 0.20s 00:00:01.43 Elapsed: 00:00:01.03
# Mc/sec: 1331.42
//
Query:       MMETSP1137-20121227|6883_1  [L=227]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (227 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        93  (0.0226719); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.13s 00:00:00.33 Elapsed: 00:00:00.34
# Mc/sec: 881.22
//
Query:       MMETSP1137-20121227|6884_1  [L=477]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   3.1e-247  818.6   0.6   3.5e-247  818.4   0.4    1.0  1  TIGR01039 atpD: ATP synthase F1, beta subunit
   4.2e-185  613.5   0.1   4.9e-185  613.3   0.0    1.0  1  TIGR03305 alt_F1F0_F1_bet: alternate F1F0 ATPase, F1 subunit beta
    1.4e-65  219.5   0.4    1.8e-65  219.2   0.3    1.0  1  TIGR01026 fliI_yscN: ATPase FliI/YscN family
      2e-64  215.8   0.1    2.4e-64  215.5   0.1    1.0  1  TIGR03496 FliI_clade1: flagellar protein export ATPase FliI
    2.3e-64  215.5   0.1    2.9e-64  215.2   0.1    1.0  1  TIGR02546 III_secr_ATP: type III secretion apparatus H+-transporting two-sector ATPase
    7.7e-64  213.7   0.3    9.4e-64  213.4   0.2    1.0  1  TIGR03498 FliI_clade3: flagellar protein export ATPase FliI
    1.6e-63  212.9   0.1      2e-63  212.6   0.1    1.0  1  TIGR03497 FliI_clade2: flagellar protein export ATPase FliI
    6.3e-41  138.2   0.8    3.4e-32  109.4   0.0    2.0  2  TIGR01043 ATP_syn_A_arch: ATP synthase archaeal, A subunit
    3.9e-40  135.5   0.9    5.5e-40  135.0   0.6    1.1  1  TIGR01041 ATP_syn_B_arch: ATP synthase archaeal, B subunit
      5e-33  112.4   0.8    1.3e-28   97.8   0.0    2.0  2  TIGR01042 V-ATPase_V1_A: V-type ATPase, A subunit
    1.1e-30  104.4   0.2    2.3e-30  103.4   0.2    1.4  1  TIGR01040 V-ATPase_V1_B: V-type ATPase, B subunit
    1.1e-29  101.4   0.1    1.4e-29  101.0   0.1    1.0  1  TIGR03324 alt_F1F0_F1_al: alternate F1F0 ATPase, F1 subunit alpha
    3.7e-28   96.3   0.3    5.1e-28   95.9   0.2    1.0  1  TIGR00962 atpA: ATP synthase F1, alpha subunit
    3.3e-06   24.0   0.0    7.5e-06   22.9   0.0    1.5  1  TIGR00767 rho: transcription termination factor Rho
  ------ inclusion threshold ------
      0.032   11.7   0.3      0.062   10.8   0.2    1.4  1  TIGR03771 anch_rpt_ABC: anchored repeat-type ABC transporter, ATP-binding subunit


Domain annotation for each model (and alignments):
>> TIGR01039  atpD: ATP synthase F1, beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  818.4   0.4  1.3e-249  3.5e-247       2     462 .]       8     474 ..       7     474 .. 0.99

  Alignments for each domain:
  == domain 1    score: 818.4 bits;  conditional E-value: 1.3e-249
   TIGR01039   2 kGkvvqvigavvdvefeesklpkiydalkvklekeseelvlevaqhlGddlvraialdstdGlvrglevkdtgkpievpvGkevlGrilnvlGepidekg.evkkkeklsihrkapsfeeqstkveiletGikvidllapyakGGkiglfGGaGvGktvliqelinniakehsGlsvfaGvGertreGndlylelkesgvld.......kvalvyGqmneppGarlrvaltgltlaeyfrdeegqdvllfidnifrftqaGsevsallGrlpsavGyqptlatemGelqeritstkkgsitsvqavyvpaddltdpapattfahldattvlsrkiaelGiypavdpldstsrlldpevvGeehyevarevqeilqrykelqdiiailGldelseedklvverarkierflsqpffvaevftGspGkyvklkdtiegfkeileGkyddlpeqafylvGsieevvekakkl 462
                 +G ++q+ig+vvdvef++ +lpk+y+a+ ++  ++  ++++ev+q lG++++ra+++ stdGl+rg +v++tg+pi+vpvG  +lGri+nvlGep+de g +++++++l+ihr+ap+f++++tk  ++etGikv+dllapy +GGkiglfGGaGvGktvli+elinnia++h+G+svf GvGertreGndly e+kes v+d       kvalvyGqmneppGar+rv+lt+lt+aeyfrd+++qdvllfidnifrf+qaGsevsallGr+psavGyqptlatemG lqeritstk+gsits+qavyvpaddltdpapattfahldattvlsr +a++Giypavdpldsts++l+pe+vG +hy++a++++e+lqrykelqdiiailGldelseed+l+v+rark+erflsqpffvaevftGspGkyv+l+d+i+gf+++l+G++ddlpeq+fylvG+i+e ++ka+kl
  MMETSP1137-20121227|6884_1   8 SGFISQIIGPVVDVEFPNGELPKVYNAIVIDDGER--KVTCEVQQLLGNNKIRAVSMTSTDGLKRGATVTNTGAPISVPVGVPTLGRIFNVLGEPVDELGgTLNADTSLPIHRTAPAFTDLDTKPSVFETGIKVVDLLAPYKRGGKIGLFGGAGVGKTVLIMELINNIARAHGGVSVFGGVGERTREGNDLYAEMKESKVIDeeklensKVALVYGQMNEPPGARMRVGLTALTMAEYFRDVNKQDVLLFIDNIFRFVQAGSEVSALLGRMPSAVGYQPTLATEMGVLQERITSTKEGSITSIQAVYVPADDLTDPAPATTFAHLDATTVLSRGLASKGIYPAVDPLDSTSTMLQPEIVGADHYQTAQRIKETLQRYKELQDIIAILGLDELSEEDRLTVARARKVERFLSQPFFVAEVFTGSPGKYVSLADSIDGFNRLLDGEFDDLPEQSFYLVGDINESIAKAEKL 474
                 6889************************9998876..9***********************************************************97527899999**********************************************************************************************************************************************************************************************************************************************************************************************************************************************************************986 PP

>> TIGR03305  alt_F1F0_F1_bet: alternate F1F0 ATPase, F1 subunit beta
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  613.3   0.0  1.8e-187  4.9e-185       2     449 .]      10     467 ..       9     467 .. 0.96

  Alignments for each domain:
  == domain 1    score: 613.3 bits;  conditional E-value: 1.8e-187
   TIGR03305   2 kvvavrgsivdvrfe.eelpalysvlkagr.ekevvvevlaqldakkvrgialtateglargmavkdsgaplkapvgkeilsrvfdvfgntidrreslkdv.kwrsvhqappaltrrssksevfetgikaidvlvplerggkaglfggagvgktvlltelihnlvsqeegvslfcgigercregeelyremkeagvldn.......tvmvfgqmneppgarfrvglaaltmaeyfrddekkdvlllidnifrfiqagsevsgllgqlpsrlgyqptlgtelaeleeriattedaaitsiqavyvpaddftdpaavhtfshlsaslvlsrkraseglypaidplkstsklatpsivgerhyklarevrrvlaqyeelkdiiamlgleelskedrrvvararrlerfltqpfftteqftglkgktvsledaldgcerilkdefedypekalymigeidea 449
                  +  + g +vdv+f+ +elp +y+ + +++ e++v+ ev + l ++k+r++++t+t+gl rg +v ++gap+ +pvg ++l+r+f+v+g+++d+   + ++ +   +h++ pa+t   +k  vfetgik++d+l+p +rggk glfggagvgktvl+ eli n+   + gvs+f g+ger reg++ly emke+ v+d+       + +v+gqmneppgar+rvgl+altmaeyfrd +k+dvll+idnifrf+qagsevs llg++ps +gyqptl+te+  l+eri++t++++itsiqavyvpadd+tdpa   tf+hl a+ vlsr  as+g+ypa+dpl+sts +++p+ivg  hy++a++++++l +y+el+diia+lgl+els+edr +varar++erfl+qpff +e ftg  gk vsl+d++dg +r+l++ef+d pe+++y++g+i+e+
  MMETSP1137-20121227|6884_1  10 FISQIIGPVVDVEFPnGELPKVYNAIVIDDgERKVTCEVQQLLGNNKIRAVSMTSTDGLKRGATVTNTGAPISVPVGVPTLGRIFNVLGEPVDELGGTLNAdTSLPIHRTAPAFTDLDTKPSVFETGIKVVDLLAPYKRGGKIGLFGGAGVGKTVLIMELINNIARAHGGVSVFGGVGERTREGNDLYAEMKESKVIDEeklenskVALVYGQMNEPPGARMRVGLTALTMAEYFRDVNKQDVLLFIDNIFRFVQAGSEVSALLGRMPSAVGYQPTLATEMGVLQERITSTKEGSITSIQAVYVPADDLTDPAPATTFAHLDATTVLSRGLASKGIYPAVDPLDSTSTMLQPEIVGADHYQTAQRIKETLQRYKELQDIIAILGLDELSEEDRLTVARARKVERFLSQPFFVAEVFTGSPGKYVSLADSIDGFNRLLDGEFDDLPEQSFYLVGDINES 467
                 567899********6269******9999876899***********************************************************9876555416679******************************************************************************************9853333333579******************************************************************************************************************************************************************************************************************************************************985 PP

>> TIGR01026  fliI_yscN: ATPase FliI/YscN family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  219.2   0.3   6.6e-68   1.8e-65      20     421 ..       4     418 ..       1     429 [. 0.87

  Alignments for each domain:
  == domain 1    score: 219.2 bits;  conditional E-value: 6.6e-68
   TIGR01026  20 avkvvGrvkkvkgllieakgpqasvGevclierkgsekkevvaevvgfe.gekvllmpyeevegveagskvlaknealsvkvgegllGrvldalGkplDekgkaldnveke.litapinPlkrakieevlstGvrsidalltvgkGqrlGifaGsGvGkstL.lGmiaratea..dvnvialiGerGrevkefie.....kdLgeeglkrs..vvvvatsDespllrlkgayvataiaeyfrdqG.kdvlllmDsvtrfakaqreigLaaGepPatkGytPsvfsllpklleraGasekGsitafytvLveGDDlnePiaDevrailDGhivLsralaerglyPaidvlasisrllk.aivseekkkavrkfrellskykenedLiriGaYkkGsdkelDkaikkleklerflkqd 421
                 + + +G + +++g +++ + p+ ++ +v +    +  +++v+ ev  +  ++k+  ++++++ g++ g++v+ +++++sv+vg   lGr+ + lG+p+De g +l+  ++  + ++ ++  +  +  +v++tG++++d l +  +G ++G+f G+GvGk +L + +i   ++a   v+v + +Ger re ++  +     k + ee+l++s   +v    +e+p +r++  ++a ++aeyfrd   +dvll++D + rf +a  e++  +G  P++ Gy P+  +++  l er  ++++Gsit++ +v v  DDl++P   ++ a lD   vLsr la++g+yPa+d l+s+s +l+ +iv++++++++++++e l  yke +d+i i    + s+++   +++   k+erfl+q 
  MMETSP1137-20121227|6884_1   4 TASKSGFISQIIGPVVDVEFPNGELPKVYNAIVIDDGERKVTCEVQQLLgNNKIRAVSMTSTDGLKRGATVTNTGAPISVPVGVPTLGRIFNVLGEPVDELGGTLNADTSLpIHRTAPAFTDLDTKPSVFETGIKVVDLLAPYKRGGKIGLFGGAGVGKTVLiMELINNIARAhgGVSVFGGVGERTREGNDLYAemkesKVIDEEKLENSkvALVYGQMNEPPGARMRVGLTALTMAEYFRDVNkQDVLLFIDNIFRFVQAGSEVSALLGRMPSAVGYQPTLATEMGVLQERITSTKEGSITSIQAVYVPADDLTDPAPATTFAHLDATTVLSRGLASKGIYPAVDPLDSTSTMLQpEIVGADHYQTAQRIKETLQRYKELQDIIAILGLDELSEED-RLTVARARKVERFLSQP 418
                 5678999***********99998777665433334555679999988651578999*********************************************988887776668888877778888889********************************9845677775555226*************9997641222246889999876325688999***********************7616899*******************************************************************************************************987549****************************96666666554.346788999*****996 PP

>> TIGR03496  FliI_clade1: flagellar protein export ATPase FliI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  215.5   0.1   8.7e-67   2.4e-64      20     397 ..      31     418 ..       9     428 .. 0.86

  Alignments for each domain:
  == domain 1    score: 215.5 bits;  conditional E-value: 8.7e-67
   TIGR03496  20 vgelveieeeegesveaevvgfee.eklllmpleeveglalgakvvlleeekklpvgeellGrvidalgepldgkg.aleaeeevsleaepinplkrerieevldvGvrainalltvgkGqrlglfagsGvGKsvLlgmlara.tea..dvvvvaLiGERgREvkefie.....knLgeeglkrs..vvvaatadespllrlraaalataiaeyfrdqg.kdvLllmDSltRfAmAqReialaiGEppatkgYppsvfaklpkLvEraGngkegkGsitafytvLvegddqqdpiadaaraiLDGHivLsRelaeaghyPaidieaSiSRvm.kkvvseehlkaarklkqllsryeenrdlisigaYkkGsdpelDeaiklvpklekflqqe 397
                 v +++ i ++ +++v++ev ++ + +k+  +++++++gl+ ga+v+++ +  ++pvg   lGr+++ lgep+d+ g +l+a++++++++++++  + ++  +v+++G+++++ l +  +G ++glf g+GvGK+vL+  l+ + ++a   v v + +GER+RE +++       k + ee l++s   +v    +e+p  r+r   +a ++aeyfrd + +dvLl++D + Rf +A  e++  +G  p + gY p+  +++  L Er  +  +++Gsit++ +v v  dd +dp   ++ a LD   vLsR la++g+yPa+d ++S S ++ +++v ++h+++a+++k++l ry+e +d+i+i +  + s+++   ++++  k+e+fl+q 
  MMETSP1137-20121227|6884_1  31 VYNAIVI-DDGERKVTCEVQQLLGnNKIRAVSMTSTDGLKRGATVTNTGAPISVPVGVPTLGRIFNVLGEPVDELGgTLNADTSLPIHRTAPAFTDLDTKPSVFETGIKVVDLLAPYKRGGKIGLFGGAGVGKTVLIMELINNiARAhgGVSVFGGVGERTREGNDLYAemkesKVIDEEKLENSkvALVYGQMNEPPGARMRVGLTALTMAEYFRDVNkQDVLLFIDNIFRFVQAGSEVSALLGRMPSAVGYQPTLATEMGVLQERITS--TKEGSITSIQAVYVPADDLTDPAPATTFAHLDATTVLSRGLASKGIYPAVDPLDSTSTMLqPEIVGADHYQTAQRIKETLQRYKELQDIIAILGLDELSEED-RLTVARARKVERFLSQP 418
                 4455555.556688999999876516778999*****************************************97527889999*****999999999999**********************************97665543144422699***********98875411122457888888762245888999**********************76268*********************************************998..59*******************************************************876269****************************98887766554.35789999999999996 PP

>> TIGR02546  III_secr_ATP: type III secretion apparatus H+-transporting two-sector ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  215.2   0.1   1.1e-66   2.9e-64       4     404 ..       6     418 ..       3     426 .. 0.88

  Alignments for each domain:
  == domain 1    score: 215.2 bits;  conditional E-value: 1.1e-66
   TIGR02546   4 evlgrvtevsgtllkavlpearvgelcl.ikekekeseleaevvgfeedeal.LsplgelsglslgseviplgrplsikvgeelLGrvldglGrpldgkkelkakeikkrpldaepPdplsRqkieqplalGvraiDglltvgeGqRiGifaeaGvGkstLlsmiarg...akadvivlaLiGeRGRevre.fieke....lgeek..rkrsvlvvstsdrsslerlkaayvataiaeyfRdqgk.kvllllDsltRfaralreigLaaGepparrgyppsvfsslprlleRaGasekGsitalYtvLvegddmndpiadevrsilDGhivLsrklaernhyPaiDvlaslsRvlk.kvvskehkkaaaklrellakykevellirlGeYkkGsdkeaDkaikkldeikkflrqs 404
                 ++ g +++++g ++ +  p+ ++ ++++ i  +  e +++ ev  +  ++ +  +++++++gl++g++v+++g p s+ vg   LGr+ + lG+p+d+ + + + +++  p+++++P  +   +    + +G++++D l    +G +iG+f++aGvGk+ L+ +++++   a+  v v++ +GeR Re ++ + e +    ++eek   ++  lv    +++   r++ +++a ++aeyfRd  k +vll++D + Rf +a  e++   G  p++ gy p++ +++  l eR  ++++Gsit++ +v v  dd +dp    + + lD   vLsr la+++ yPa+D l s s +l+ ++v ++h+++a++++e l++yke++++i +    + s+++    +++  ++++fl+q 
  MMETSP1137-20121227|6884_1   6 SKSGFISQIIGPVVDVEFPNGELPKVYNaIVIDDGERKVTCEVQQLLGNNKIrAVSMTSTDGLKRGATVTNTGAPISVPVGVPTLGRIFNVLGEPVDELGGTLNADTS-LPIHRTAPAFTDLDTKPSVFETGIKVVDLLAPYKRGGKIGLFGGAGVGKTVLIMELINNiarAHGGVSVFGGVGERTREGNDlYAEMKeskvIDEEKleNSKVALVYGQMNEPPGARMRVGLTALTMAEYFRDVNKqDVLLFIDNIFRFVQAGSEVSALLGRMPSAVGYQPTLATEMGVLQERITSTKEGSITSIQAVYVPADDLTDPAPATTFAHLDATTVLSRGLASKGIYPAVDPLDSTSTMLQpEIVGADHYQTAQRIKETLQRYKELQDIIAILGLDELSEEDR-LTVARARKVERFLSQP 418
                 578999**************999999852444678899999999987665542789*****************************************98766666555.8*******************************************************9996445678*************886334432111134454114678899***************************65527*********************************************************************************************************988549***************************9866655554433.47899999*****996 PP

>> TIGR03498  FliI_clade3: flagellar protein export ATPase FliI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  213.4   0.2   3.4e-66   9.4e-64      27     399 ..      36     417 ..       9     425 .. 0.86

  Alignments for each domain:
  == domain 1    score: 213.4 bits;  conditional E-value: 3.4e-66
   TIGR03498  27 eieaeegkkvlaevvgle.edevllmpfeslegvelgaavvveeealevrpeeswlGRvidalgepiDgkgalaegeaavpvkaeppaalsRkrveeklktGvrvidlfltlcrGqRlGifaGsGvGkstllsmlara...aaaDvvvialvGeRGRevrefled....d.lgeeglkrs..vvvvatsDesplmRrkaayvalaiaeyfRdqg.kdvllllDsvtRfakaqReialaageppvarGYtpsvfselPrLLeRaGpGaegkGsitglftvLvdgDdhnePvaDavrgilDGhivldRaiaergryPainvlksvsRl.akkvlspeekklvkrlrallaryeetedlirlGayrkGsdaevDeavklvpkieeflkq 399
                  i+ ++++kv++ev +l  ++++ +++++s++g + ga+v+ + ++ +v +    lGR+ + lgep+D+ g   +++++ p++ ++pa ++     + ++tG++v+dl+++  rG ++G+f G+GvGk++l+  l+++   a+  v+v + vGeR Re +++  +    + + ee+l+ s   +v    +e+p +R++   +al++aeyfRd + +dvll++D + Rf +a  e++   g  p a GY p+  +e+  L eR    ++++Gsit++ +v v +Dd ++P   ++ + lD   vl+R +a +g yPa+++l s+s +  ++++ +++ ++ +r+++ l+ry+e +d+i + +  + s+++    v+   k+e+fl+q
  MMETSP1137-20121227|6884_1  36 VID-DGERKVTCEVQQLLgNNKIRAVSMTSTDGLKRGATVTNTGAPISVPVGVPTLGRIFNVLGEPVDELGGTLNADTSLPIHRTAPAFTDLDTKPSVFETGIKVVDLLAPYKRGGKIGLFGGAGVGKTVLIMELINNiarAHGGVSVFGGVGERTREGNDLYAEmkesKvIDEEKLENSkvALVYGQMNEPPGARMRVGLTALTMAEYFRDVNkQDVLLFIDNIFRFVQAGSEVSALLGRMPSAVGYQPTLATEMGVLQERIT--STKEGSITSIQAVYVPADDLTDPAPATTFAHLDATTVLSRGLASKGIYPAVDPLDSTSTMlQPEIVGADHYQTAQRIKETLQRYKELQDIIAILGLDELSEED-RLTVARARKVERFLSQ 417
                 333.44599*****9976156899***********************************************************888888888888899********************************98777665221345799***********9887543111132567777655215678899***********************76268*********************************************99..689*******************************************************86157999*************************987766655443.3466777777777777 PP

>> TIGR03497  FliI_clade2: flagellar protein export ATPase FliI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  212.6   0.1   7.4e-66     2e-63       1     394 [.       9     417 ..       9     426 .. 0.88

  Alignments for each domain:
  == domain 1    score: 212.6 bits;  conditional E-value: 7.4e-66
   TIGR03497   1 GkvkkvvglvieakgpkakiGelcs..ikkkeekkvlaevvgfke.ekvlLmPleevegiapgslveatgkklavkvgkellGkvldglGeplde.kelvkkkeklpleaeppnplkrkrikdvlevgvkaidglltvGkGqrvGifagsGvGkstl.lgmiarnaka..dinviaLvGerGrevrefi....e.kdLgeeGlkksvv..vvatsdqpallrlkaalvataiaeyfrdqG.kkvllmmDsvtrfamaqrevglavgepPttkGytpsvfsllpklleraGksekGsitglytvLvdgDdlnePiaDavrgilDGhivLsreLaeknhyPaidvlksvsrvme.eivseehkelaeklrellavykeaedlikigaykkgsnkkideaiekkekinkfLkq 394
                 G +++++g v+  + p+ ++ ++ +  +   +e+kv++ev  +   +k+  + ++ ++g+  g++v++tg +++v+vg   lG++++ lGep+de  ++++  ++lp+++++p   +  +   v+e+g+k++d l    +G ++G+f g+GvGk++l + +i   a+a   + v + vGer re +++     e k + ee l+ s v  v    ++p   r++  l+a ++aeyfrd   ++vll +D + rf +a  ev+   g  P++ Gy p++ + +  l er  ++++Gsit++ +v v +Ddl +P + +  + lD   vLsr La+k+ yPa+d l+s s +++ eiv ++h ++a++++e+l+ yke +d+i i    + s++    ++    k+++fL q
  MMETSP1137-20121227|6884_1   9 GFISQIIGPVVDVEFPNGELPKVYNaiVIDDGERKVTCEVQQLLGnNKIRAVSMTSTDGLKRGATVTNTGAPISVPVGVPTLGRIFNVLGEPVDElGGTLNADTSLPIHRTAPAFTDLDTKPSVFETGIKVVDLLAPYKRGGKIGLFGGAGVGKTVLiMELINNIARAhgGVSVFGGVGERTREGNDLYaemkEsKVIDEEKLENSKValVYGQMNEPPGARMRVGLTALTMAEYFRDVNkQDVLLFIDNIFRFVQAGSEVSALLGRMPSAVGYQPTLATEMGVLQERITSTKEGSITSIQAVYVPADDLTDPAPATTFAHLDATTVLSRGLASKGIYPAVDPLDSTSTMLQpEIVGADHYQTAQRIKETLQRYKELQDIIAILGLDELSEEDR-LTVARARKVERFLSQ 417
                 56889999999998888776665431133588999*****9986505566799******************************************8789999999********999999999********************************99834566655555227*************999752222224578999998854227788999*********************76258*********************************************************************************************************998659*****************************99999886653.456677899999998 PP

>> TIGR01043  ATP_syn_A_arch: ATP synthase archaeal, A subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.5   0.2   8.2e-10   2.2e-07       2      93 ..       8     104 ..       7     111 .. 0.84
   2 !  109.4   0.0   1.3e-34   3.4e-32     191     523 ..     115     438 ..     106     452 .. 0.86

  Alignments for each domain:
  == domain 1    score: 27.5 bits;  conditional E-value: 8.2e-10
   TIGR01043   2 kGeivrvsGplvvaeglkg..akmye..vvkvgeekliGeiiriegdkaviqv.yeetsGikpgepvestGaplsvelGpGllesiydGvqrpldvl 93 
                 +G i ++ Gp+v  e  +g   k+y+  v+  ge+k++ e+ ++ g++ +  v   +t+G+k g +v++tGap+sv +G   l++i++ +  p+d l
  MMETSP1137-20121227|6884_1   8 SGFISQIIGPVVDVEFPNGelPKVYNaiVIDDGERKVTCEVQQLLGNNKIRAVsMTSTDGLKRGATVTNTGAPISVPVGVPTLGRIFNVLGEPVDEL 104
                 688999*****988754432268998334456899***********99998883579************************************9987 PP

  == domain 2    score: 109.4 bits;  conditional E-value: 1.3e-34
   TIGR01043 191 pvrkkrpvkeklepeeplv.tGqrildtlfpiakGGtaaipGpfGsGktvtqqslak.w..sdaeivvyiGcGerGnemtevleefpeledpktGkpllertvliantsnmpvaareasiytGitiaeyfrdmG.ydvalvadstsrwaealreisgrleempgeeGypaylasrlaefyeraGrvktlgseeregsvtvvgavsppGGdfsepvtqntlrivkvfwaldaklaerrhfpainwlqsyslyvdsvedwfaenvdeewrelrdealellqkeaelqeivrlvGsdalpekeklvlevarlireaflkqnafdevdtysspekqvkilkv 523
                 p+ ++ p+   l+ +  +  tG++++d l p  +GG   + G+ G Gktv   +l +    ++  + v+ G Ger  e  +   e+ e + +   k   ++  l+    n p  ar     t +t+aeyfrd    dv+l  d   r+ +a  e+s+ l  mp+  Gy   la+ +    er       +s+ +egs+t + av  p  d+++p    t   +     l   la++  +pa++ l+s s   +       e v  ++ ++ +++ e+lq+ +elq+i+ ++G d+l+e+++l++  ar + e fl q  f       sp k v++   
  MMETSP1137-20121227|6884_1 115 PIHRTAPAFTDLDTKPSVFeTGIKVVDLLAPYKRGGKIGLFGGAGVGKTVLIMELINnIarAHGGVSVFGGVGERTREGNDLYAEMKESKVIDEEKLENSKVALVYGQMNEPPGARMRVGLTALTMAEYFRDVNkQDVLLFIDNIFRFVQAGSEVSALLGRMPSAVGYQPTLATEMGVLQERI------TST-KEGSITSIQAVYVPADDLTDPAPATTFAHLDATTVLSRGLASKGIYPAVDPLDSTSTMLQ------PEIVGADHYQTAQRIKETLQRYKELQDIIAILGLDELSEEDRLTVARARKV-ERFLSQPFFVAEVFTGSPGKYVSLADS 438
                 677777777766654333249*****************************99888642411455699********9999999999999998888888888999*****************************86379***************************************9999985......333.78****************************************************998654......47899999999**********************************999987.789999877543333455565555555 PP

>> TIGR01041  ATP_syn_B_arch: ATP synthase archaeal, B subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  135.0   0.6     2e-42   5.5e-40       5     412 ..      11     417 ..       8     422 .. 0.86

  Alignments for each domain:
  == domain 1    score: 135.0 bits;  conditional E-value: 2e-42
   TIGR01041   5 iteikGplvlvekveevaydeiveielpdGekrrGqvldsseglvvvq.v.fegttgldkeatkvrflGetlklkvsedllGrilngsGepidg.GpeivpderrdinGaalnpaareypeefiqtGisaidGlntlvrGqklpifsgsGlphnelalqiarq.akvrgeesefavvfaalGitaeeanffkkdfektGale.......ravvflnladdpaverivtprlaltvaeylafekdlhvlviltdltnycealreisaareevpGrrGypGylytdlatlyeraGrvkGkkGsitqipiltmpdddithpipdltGyiteGqivlsrelhrkGiyppinvlpslsrlmkdGiGeGktredhkdvsdqlyaayaegrdlrdlvaivGeealserdrkylkfadefekkfvkq 412
                 i++i Gp+v ve  ++   +    i ++dGe++    ++   g   ++ v + +t gl++ at v  +G  + ++v +  lGri+n +Gep+d+ G ++ +d  + i+ +a   +  +      +tGi  +d l    rG k+  f g+G+ +  l +++ ++ a+ +g       vf+ +G ++ e n +  +++++  ++       +++++    ++p+  r+    +alt+aey+   +   vl  + ++  +++a  e+sa    +p   Gy   l t++  l er      k+Gsit i  + +p dd+t p p  t    +   vlsr l +kGiyp ++ l s s +++  i       dh + ++++  +  + ++l+d++ai+G + lse dr  +  a + e +f++q
  MMETSP1137-20121227|6884_1  11 ISQIIGPVVDVEFPNGELPKVYNAIVIDDGERKVTCEVQQLLGNNKIRaVsMTSTDGLKRGAT-VTNTGAPISVPVGVPTLGRIFNVLGEPVDElGGTLNADTSLPIHRTAPAFTDLDTKPSVFETGIKVVDLLAPYKRGGKIGLFGGAGVGKTVLIMELINNiARAHGG----VSVFGGVGERTREGNDLYAEMKESKVIDeeklensKVALVYGQMNEPPGARMRVGLTALTMAEYFRDVNKQDVLLFIDNIFRFVQAGSEVSALLGRMPSAVGYQPTLATEMGVLQERIT--STKEGSITSIQAVYVPADDLTDPAPATTFAHLDATTVLSRGLASKGIYPAVDPLDSTSTMLQPEIV----GADHYQTAQRIKETLQRYKELQDIIAILGLDELSEEDRLTVARARKVE-RFLSQ 417
                 899******999776655555555668999998765444443333333131356889999888.*****************************76999*********99887777777777788******************************9998876551444443....45899999999999998888888776642222233466777889**********************9999***********************************************76..679**************************9*****************************9998774....57************************************9999998887.57666 PP

>> TIGR01042  V-ATPase_V1_A: V-type ATPase, A subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   0.2     2e-05    0.0054       2      93 ..       8     104 ..       7     111 .. 0.83
   2 !   97.8   0.0   4.7e-31   1.3e-28     192     506 ..     114     418 ..     106     427 .. 0.87

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 2e-05
   TIGR01042   2 ygsvkkvsgpvvvaeemaga..amyelvrv..gheelvgeiirlegdkatiqv.yeetagltvgdpvlrtgkplsvelgpgilgnifdgiqrplkai 93 
                  g + ++ gpvv  e  +g    +y+ + +  g++++  e+ +l g++    v    t gl+ g +v  tg p+sv +g   lg if+ +  p++++
  MMETSP1137-20121227|6884_1   8 SGFISQIIGPVVDVEFPNGElpKVYNAIVIddGERKVTCEVQQLLGNNKIRAVsMTSTDGLKRGATVTNTGAPISVPVGVPTLGRIFNVLGEPVDEL 104
                 5899999*****9998888533789866553389999******9998765555267899*****************************999998765 PP

  == domain 2    score: 97.8 bits;  conditional E-value: 4.7e-31
   TIGR01042 192 wpvrsprpvaeklaadtp.lltgqrvldalfpsvqggttaipgafgcgktvisqsl.skys..nsdvivyvgcgergnemaevlrdfpeltveldgreesimkrttlvantsnmpvaareasiytgitlaeyfrdmgy.nvsmladstsrwaealreisgrlaempadsgypaylgarlasfyeragrvkclgsperegsvsivgavsppggdfsdpvtsatlgivqvfwgldkklaqrkhfpsvnwlisyskylkaleefyekeypefvelrtkvkeilqeeeeleeivqlvgkdalaesdkitlevaklikedflqqn 506
                  p+ ++ p+   l ++   + tg +v+d l p  +gg + + g  g gktv+   l    +     v v+ g ger  e  ++  ++ e +v  + + e+   + +lv    n p  ar     t +t+aeyfrd+ + +v ++ d   r+ +a  e+s  l+ mp+  gy   l++ +  + er           +egs++ + av  p  d++dp  ++t++  +    l + la +  +p+v+ l s s  l+   +  e   ++  +  +++ke lq+ +el++i+ ++g d l+e+d++t+  a+ + e fl q 
  MMETSP1137-20121227|6884_1 114 LPIHRTAPAFTDLDTKPSvFETGIKVVDLLAPYKRGGKIGLFGGAGVGKTVLIMELiNNIAraHGGVSVFGGVGERTREGNDLYAEMKESKVIDEEKLEN--SKVALVYGQMNEPPGARMRVGLTALTMAEYFRDVNKqDVLLFIDNIFRFVQAGSEVSALLGRMPSAVGYQPTLATEMGVLQERIT-------STKEGSITSIQAVYVPADDLTDPAPATTFAHLDATTVLSRGLASKGIYPAVDPLDSTSTMLQ---P--EIVGADHYQTAQRIKETLQRYKELQDIIAILGLDELSEEDRLTVARARKV-ERFLSQP 418
                 5777777877777766541559*****************************77666144541145678999****************9987765555554..689******************************986268999**************************************99965.......4689**************************************************99987654...3..67788899999********************************9999876.5677775 PP

>> TIGR01040  V-ATPase_V1_B: V-type ATPase, B subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  103.4   0.2   8.4e-33   2.3e-30      30     424 ..      36     420 ..       9     428 .. 0.81

  Alignments for each domain:
  == domain 1    score: 103.4 bits;  conditional E-value: 8.4e-33
   TIGR01040  30 kladgtvr.kgqvlevsgekavvqv.fegtsgidakkttveftgdilrlpvsedmlgrvfngsgkpidk.gpkvlaedyldingqpinpkariypeemiqtgisaidvmnsiargqkiplfsaaglphn....eiaaqicrqaglvkksekdvkdekeenfaivfaamgvnletarffkqdfeengslervtlflnlandptieriitprlalttaeylayekekhvlviltdmssyadalrevsaareevpgrrgfpgymytdlatiyeragrvegrngsitqipiltmpnddithpipdltgyitegqiyvdrqlhnrqiyppinvlpslsrlmksaigegmtrkdhsdvsnqlyakyaigkdvaamkavvgeealssedllyleflekfekkfiaqgay 424
                  + dg+++ + +v ++ g++ +  v +  t g+  + +tv  tg  + +pv    lgr+fn  g+p+d+ g ++ a+  l i+ ++   +       +++tgi  +d +    rg ki lf +ag+ +     e+  +i+r  g v+     v +   e    ++a    +++ ++ + ++  en    +v+l     n+p   r+     alt+aey+    ++ vl+ + ++  +++a  evsa    +p+  g+   + t++ ++ er    + ++gsit i  + +p dd+t p p  t    +    + r l  + iyp ++ l s s +++  i       dh + ++++  +    k+++ + a++g + ls+ed+l +    k e+ f++q  +
  MMETSP1137-20121227|6884_1  36 VIDDGERKvTCEVQQLLGNNKIRAVsMTSTDGLK-RGATVTNTGAPISVPVGVPTLGRIFNVLGEPVDElGGTLNADTSLPIHRTAPAFTDLDTKPSVFETGIKVVDLLAPYKRGGKIGLFGGAGVGKTvlimELINNIARAHGGVSVFGG-VGERTRE-GNDLYA----EMKESKVIDEEKLEN---SKVALVYGQMNEPPGARMRVGLTALTMAEYFRDVNKQDVLLFIDNIFRFVQAGSEVSALLGRMPSAVGYQPTLATEMGVLQERIT--STKEGSITSIQAVYVPADDLTDPAPATTFAHLDATTVLSRGLASKGIYPAVDPLDSTSTMLQPEI----VGADHYQTAQRIKETLQRYKELQDIIAILGLDELSEEDRLTVARARKVER-FLSQPFF 420
                 3444444313455555566555555245677775.5667888**************************8567778899999987654444444444699**************************99863333777889999999987655.4433333.233455....566777777665555...579999999**************************************************************************86..5789************************99999**************************999876....567****************************************9999996.7777655 PP

>> TIGR03324  alt_F1F0_F1_al: alternate F1F0 ATPase, F1 subunit alpha
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  101.0   0.1     5e-32   1.4e-29      68     423 ..      54     418 ..      44     459 .. 0.89

  Alignments for each domain:
  == domain 1    score: 101.0 bits;  conditional E-value: 5e-32
   TIGR03324  68 edevGvvllgeysklqaGdevertgrvldvpvGdellGrvvdplGrpldg.kkelasskrlpierpapeimdrapvtvplqtGlkvvdalipiGrGqrelilGdrqtGktaiaidtiln.qkdknvlcvycaiGqrasavakvvaelrekgald.....y.tiv.vvtegndppGlqyiapyaatsiaeyfmeq.GrdvlivyddltkharayrelslllrrppGreafpGdifyvhsrllersthlrkerGGGsltalpiieteaqnisayiptnlisitdGqiylspelfelGvlpavdvGksvsrvGG.kaqlaayravaGdlklayaqfeeleaf.arfg.arldeetrkvierGrrirailkqt 423
                 ++++ +v + + + l+ G  v  tg  + vpvG   lGr+ + lG p+d+ +++l+  + lpi r ap+  d  +    ++tG+kvvd l p  rG +  ++G    Gkt + ++ i n  + +  + v+  +G+r+     + ae++e + +d        ++ v ++ n+ppG +     +a ++aeyf +   +dvl+  d++ +  +a  e+s ll r p    +   +      l er t  +     Gs+t++  +   a +++   p+   +  d    ls  l ++G+ pavd   s s +       a + + a ++k +  +++el+   a +g   l ee r ++ r r++   l q+
  MMETSP1137-20121227|6884_1  54 NNKIRAVSMTSTDGLKRGATVTNTGAPISVPVGVPTLGRIFNVLGEPVDElGGTLNADTSLPIHRTAPAFTDLDTKPSVFETGIKVVDLLAPYKRGGKIGLFGGAGVGKTVLIMELINNiARAHGGVSVFGGVGERTREGNDLYAEMKESKVIDeekleNsKVAlVYGQMNEPPGARMRVGLTALTMAEYFRDVnKQDVLLFIDNIFRFVQAGSEVSALLGRMPSAVGYQPTLATEMGVLQERITSTK----EGSITSIQAVYVPADDLTDPAPATTFAHLDATTVLSRGLASKGIYPAVDPLDSTSTMLQpEIVGADHYQTAQRIKETLQRYKELQDIiAILGlDELSEEDRLTVARARKVERFLSQP 418
                 5678889999999************************************8456889999***************99999*********************************99999884467789**********************9988762222222344156889*********************986157*********************************99999999*****99765....49***********************************************99999987651555566888999************87626666357999*************999997 PP

>> TIGR00962  atpA: ATP synthase F1, alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.9   0.2   1.9e-30   5.1e-28      61     424 ..      48     418 ..      28     424 .. 0.87

  Alignments for each domain:
  == domain 1    score: 95.9 bits;  conditional E-value: 1.9e-30
   TIGR00962  61 ialnleedsvGvvilGdyseikeGsevkrtgevlevpvGdallGrvvnalGepidGkG.dieseefsavekkaPgvierksvkePlqtGikaidaliPiGrGqreliiGdrqtGktavaidtiinqkdskkdvkcvyvaiGqkestvaqvveklee.....kgaleytiv..vaasasdsaslqylaPyagvalaeyfrd.kgkdaliiyddlskqavayrqlslllrrPPGreayPGdvfylhsrlleraaklsdekGaGsltalPiietqagdvsayiPtnvisitdGqiflesdlfnsGirPainvGlsvsrvGgaaqikaik.kvaGslrlelaqyreleafsqf.a.sdldeatkkqlerGkrlvellkqe 424
                 + + l ++++ +v + ++  +k G +v  tg  ++vpvG   lGr+ n lGep+d  G  +++++  ++ ++aP+  +  +    ++tGik +d l P  rG +  + G    Gkt + ++ i n   ++   + v+  +G ++    ++  +++e     ++ le++ v  v  + +++ + +     ++ ++aeyfrd + +d+l+  d++ +  +a  ++s ll r P    y   +      l er +       +Gs+t++  +   a+d++   P+   +  d    l+  l  +Gi Pa++   s s +     + a   + a  ++  l +y+el+   +  +  +l e  + +++r +++  +l q+
  MMETSP1137-20121227|6884_1  48 VQQLLGNNKIRAVSMTSTDGLKRGATVTNTGAPISVPVGVPTLGRIFNVLGEPVDELGgTLNADTSLPIHRTAPAFTDLDTKPSVFETGIKVVDLLAPYKRGGKIGLFGGAGVGKTVLIMELINNIARAH-GGVSVFGGVGERTREGNDLYAEMKEskvidEEKLENSKValVYGQMNEPPGARMRVGLTALTMAEYFRDvNKQDVLLFIDNIFRFVQAGSEVSALLGRMPSAVGYQPTLATEMGVLQERITST----KEGSITSIQAVYVPADDLTDPAPATTFAHLDATTVLSRGLASKGIYPAVDPLDSTSTMLQPEIVGADHyQTAQRIKETLQRYKELQDIIAIlGlDELSEEDRLTVARARKVERFLSQP 418
                 4556789999*********************************************985278899999*************************************************99999887777766.66789******99888777776665111114566666543378899**********************93456899999**************************999999999999998754....469*****************************************************999888887754278889***********987654242468999999999999999999886 PP

>> TIGR00767  rho: transcription termination factor Rho
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.9   0.0   2.7e-08   7.5e-06     154     393 ..     135     388 ..      53     399 .. 0.78

  Alignments for each domain:
  == domain 1    score: 22.9 bits;  conditional E-value: 2.7e-08
   TIGR00767 154 lttrvldliaPiGkGqralivaPPkaGktvllqeianaitrnnpevelivlliderPeevtdmqrsv..............kgevvastfdepasrhvqvaelviekakrlve.kkkdvvilldsitrlarayntvsPasGkilsGGvdatalhkPkrflGaarnieeGGsltiiatalvetGskmdevifeefkgtGnaelkldrklaerrvfPaidikks.Gtrkeelllskeelekvwvlrkvlsgldsveai 393
                    +v+dl+aP  +G +  +      Gktvl+ e+ n i+r +  v ++   + er  e  d+  ++              k  +v   ++ep+   ++v   ++  a+   + +k+dv++++d i r+ +a  +vs   G++ s    + +l      l       + Gs+t i +  v +   +d      f    +a  +l+r la + ++Pa+d   s  t  +  ++  ++++    ++++l+  ++ + i
  MMETSP1137-20121227|6884_1 135 TGIKVVDLLAPYKRGGKIGLFGGAGVGKTVLIMELINNIARAHGGVSVF-GGVGERTREGNDLYAEMkeskvideeklensKVALVYGQMNEPPGARMRVGLTALTMAEYFRDvNKQDVLLFIDNIFRFVQAGSEVSALLGRMPSAVGYQPTLATEMGVLQERITSTKEGSITSIQAVYVPADDLTDPAPATTFAHL-DATTVLSRGLASKGIYPAVDPLDStSTMLQPEIVGADHYQTAQRIKETLQRYKELQDI 388
                 34589**********99999999*********************99865.578999999877654441111123222222223345667899**999999988888887655425779*************************998666777888888888877888899*****************9999998765.56678***************65551566677778888888888888888877766544 PP

>> TIGR03771  anch_rpt_ABC: anchored repeat-type ABC transporter, ATP-binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.2   0.00023     0.062       4      42 ..     147     185 ..     145     195 .. 0.87

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 0.00023
   TIGR03771   4 dkGellgllGpnGaGkttllrailglikvakGsvkvagk 42 
                 ++G  +gl+G  G Gkt l+  ++  i++a+G v v g 
  MMETSP1137-20121227|6884_1 147 KRGGKIGLFGGAGVGKTVLIMELINNIARAHGGVSVFGG 185
                 57889*****************************99774 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (477 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       208  (0.050707); expected 82.0 (0.02)
Passed bias filter:                      198  (0.0482691); expected 82.0 (0.02)
Passed Vit filter:                        49  (0.0119454); expected 4.1 (0.001)
Passed Fwd filter:                        15  (0.00365675); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.67u 0.23s 00:00:00.90 Elapsed: 00:00:00.64
# Mc/sec: 983.73
//
Query:       MMETSP1137-20121227|6886_1  [L=178]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (178 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        76  (0.0185275); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.18s 00:00:00.37 Elapsed: 00:00:00.43
# Mc/sec: 546.37
//
Query:       MMETSP1137-20121227|6887_1  [L=345]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.9e-11   40.0   0.0    3.6e-11   39.7   0.0    1.0  1  TIGR02956 TMAO_torS: TMAO reductase sytem sensor TorS
    2.8e-08   31.2   0.0    3.7e-08   30.8   0.0    1.1  1  TIGR02154 PhoB: phosphate regulon transcriptional regulatory protein PhoB
    5.9e-08   30.1   0.0    8.1e-08   29.6   0.0    1.1  1  TIGR02875 spore_0_A: sporulation transcription factor Spo0A
    1.3e-06   25.3   0.0    1.6e-06   25.0   0.0    1.1  1  TIGR01818 ntrC: nitrogen regulation protein NR(I)
    0.00015   19.3   0.0    0.00022   18.8   0.0    1.2  1  TIGR01387 cztR_silR_copR: heavy metal response regulator


Domain annotation for each model (and alignments):
>> TIGR02956  TMAO_torS: TMAO reductase sytem sensor TorS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.7   0.0   4.4e-14   3.6e-11     703     818 ..     206     332 ..     188     344 .. 0.84

  Alignments for each domain:
  == domain 1    score: 39.7 bits;  conditional E-value: 4.4e-14
   TIGR02956 703 rvLlvEDNevnamvaqglleklGhk.vtlaesgksAleclee..kaFD..lallDinLpDtdGvtLlkqLkeleeake....e.lkfiavsAhvfnedv.ekylaagFdgflaKPlsekqLvatlak 818
                  vL+vED +    +++ +l k G +   +a +g++A + l +    F    +++D+++p  dG++ ++ ++e e ++     + l++i++sA+  ++   e+  ++gFd++l KPl++  L+a la 
  MMETSP1137-20121227|6887_1 206 PVLVVEDDPTLRWLTETMLSKWGAEeLRAASDGQEAMRMLTHphAPFKpaWVIMDVQMPVLDGIQTTRAIREYEREQRvprqDrLRIIGFSANGDDDFCrEQASDVGFDAMLCKPLKMTLLKACLAG 332
                 69*********************862678899********99844575336899********************9988999846*********8777763467789***************999986 PP

>> TIGR02154  PhoB: phosphate regulon transcriptional regulatory protein PhoB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.8   0.0   4.5e-11   3.7e-08       5     119 ..     207     333 ..     203     344 .. 0.85

  Alignments for each domain:
  == domain 1    score: 30.8 bits;  conditional E-value: 4.5e-11
   TIGR02154   5 ilvvedeeairellaynlekegyevve.aedaeealalikee....lPdlilldWmlpgtsGielarrlrkeeetreiP......iimltargeeed.rvrgletGaddyvvkPfspkellarikav 119
                 +lvved++++r l + +l+k g e ++ a+d++ea+ ++++     +P  +++d  +p   Gi+ +r +r+ e+ + +P      ii ++a g+++  r ++ ++G d  + kP  ++ l a + ++
  MMETSP1137-20121227|6887_1 207 VLVVEDDPTLRWLTETMLSKWGAEELRaASDGQEAMRMLTHPhapfKPAWVIMDVQMPVLDGIQTTRAIREYEREQRVPrqdrlrIIGFSANGDDDFcREQASDVGFDAMLCKPLKMTLLKACLAGI 333
                 8*******************998776516899****9998753333699***********************99999988888889*******9875256899*************99998877665 PP

>> TIGR02875  spore_0_A: sporulation transcription factor Spo0A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.6   0.0   9.9e-11   8.1e-08      28     118 ..     229     330 ..     206     343 .. 0.74

  Alignments for each domain:
  == domain 1    score: 29.6 bits;  conditional E-value: 9.9e-11
   TIGR02875  28 levvGvaknGvealelikek....kpdvvvldiimpyldGlgvleklaeielkak.p.....kvlllsavGqekitk.ravelGadyyvlkpfdleilaari 118
                  e +  a +G+ea++++ +     kp  v++d+ mp ldG+     ++e e++++ p     +++ +sa G ++ ++ +a ++G d  + kp+ + +l a +
  MMETSP1137-20121227|6887_1 229 AEELRAASDGQEAMRMLTHPhapfKPAWVIMDVQMPVLDGIQTTRAIREYEREQRvPrqdrlRIIGFSANGDDDFCReQASDVGFDAMLCKPLKMTLLKACL 330
                 44556799********9874333489***************9999888877654323222227999*******99863799***************998765 PP

>> TIGR01818  ntrC: nitrogen regulation protein NR(I)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.0   0.0     2e-09   1.6e-06       1     103 [.     207     323 ..     207     343 .. 0.75

  Alignments for each domain:
  == domain 1    score: 25.0 bits;  conditional E-value: 2e-09
   TIGR01818   1 vlvvdddrsirtvlekalaeagl.evrtfdnaasvlralare....qpdllitdvrmPgedgldllkkikk.....rrP...klpvivmsahsdldaavk.ayqrGafeylpkPfdl 103
                 vlvv+dd ++r++ e+ l++ g  e r+  ++++++r+l++     +p  +i dv+mP  dg++  + i++     r P   +l++i  sa+ d d + + a++ G    l kP+ +
  MMETSP1137-20121227|6887_1 207 VLVVEDDPTLRWLTETMLSKWGAeELRAASDGQEAMRMLTHPhapfKPAWVIMDVQMPVLDGIQTTRAIREyereqRVPrqdRLRIIGFSANGDDDFCREqASDVGFDAMLCKPLKM 323
                 79******************9972589999********98754455899****************9999862222223322257888888877766554404444444467777655 PP

>> TIGR01387  cztR_silR_copR: heavy metal response regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.0   2.6e-07   0.00022       1     107 [.     207     327 ..     207     343 .. 0.68

  Alignments for each domain:
  == domain 1    score: 18.8 bits;  conditional E-value: 2.6e-07
   TIGR01387   1 ilvvedeqktaeylqqG.lsesGy.vvdivsnGrdGlhlaekddy....dliildvmlpgldGwevlkalresaketpv........llltarde.vadkvkGlelGaddylvkpfefaell 107
                 +lvved++ t ++l++  ls+ G   + ++s+G++ + + ++ +     + +i+dv++p ldG +  +a+re ++e+ v        + ++a+++    + +  ++G d  l kp++++ l 
  MMETSP1137-20121227|6887_1 207 VLVVEDDP-TLRWLTETmLSKWGAeELRAASDGQEAMRMLTHPHApfkpAWVIMDVQMPVLDGIQTTRAIREYEREQRVprqdrlriIGFSANGDdDFCREQASDVGFDAMLCKPLKMTLLK 327
                 799**997.678887652788786258899*******99776543122278********************988877542222221133344332022355666777777777777776665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (345 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        45  (0.0109703); expected 82.0 (0.02)
Passed bias filter:                       32  (0.00780107); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.26u 0.21s 00:00:00.47 Elapsed: 00:00:00.33
# Mc/sec: 1379.89
//
Query:       MMETSP1137-20121227|6888_1  [L=522]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.9e-86  287.3   0.0    4.6e-86  287.1   0.0    1.0  1  TIGR00387 glcD: glycolate oxidase, subunit GlcD
    1.9e-12   44.6   0.0      3e-12   44.0   0.0    1.2  1  TIGR01678 FAD_lactone_ox: sugar 1,4-lactone oxidases
    1.1e-10   38.9   0.1    1.7e-10   38.2   0.1    1.2  1  TIGR01679 bact_FAD_ox: FAD-linked oxidoreductase
    1.4e-06   24.9   0.0    2.8e-06   23.9   0.0    1.4  1  TIGR01677 pln_FAD_oxido: plant-specific FAD-dependent oxidoreductase
  ------ inclusion threshold ------
      0.025   11.2   0.0      0.034   10.8   0.0    1.1  1  TIGR01676 GLDHase: galactonolactone dehydrogenase


Domain annotation for each model (and alignments):
>> TIGR00387  glcD: glycolate oxidase, subunit GlcD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  287.1   0.0   5.6e-89   4.6e-86       4     413 .]      98     510 ..      95     510 .. 0.91

  Alignments for each domain:
  == domain 1    score: 287.1 bits;  conditional E-value: 5.6e-89
   TIGR00387   4 PknteqvarilklCserrikvvprGagtglsGgalpeegglvlvfkrlnkileideenltavvqPGvinkeleeaveeknlfyppDPssqkastiGGniaenaGGlrglkYGvtvdyvlglevvladGeilriggktvkdvaGydltkLlvgsEGtLgivteiilkllpkPelkkvllavfdsiekaaqavadiiaa.giiPaalEflDnlsikavedv.vkigypveakaillveldgveeeverd..lekveeilkkngavdvkiaqdeeerlklwaarknAlkavsklspkvlveDvtvPrsklpevlkeiaeiaskyddfilivgHaGDGnlHpliltdeeekeelerveellee.ilelavelgGtisgEHGiGvekaeemklkfnekeleimravkkafdPknilnPgk 413
                 P  t +v+++l++C+e++i vvp+G  tgl Gg++p+ + +vl  +r+nki  +de+      + G + ++l++   e++++ p D +++ ++ iGGn+a+naGGlr l+YG  +  vlglevvladG +l+ +    kd +Gyd+ +L++gsEGtLg++t + + l   P +++ +    ds e+  ++ +    + g + +a+EflD+ s++ v    v++ +  + +  +l+el g +e+ + +     +e+++  + ++d  iaqd  + + +w+ r+   +a+sk    v+  Dv++P ++l ++++e++   + ++ ++  +gH GDGnlH  ++  +   e+ + v+ ++e  ++e   +  G+is+EHGiGv+k  ++++ + ++ +++m+ +k+ +dPkni+nP k
  MMETSP1137-20121227|6888_1  98 PGSTGEVSKVLAFCNEHNIAVVPQGGNTGLVGGSVPVRDEVVLSLSRMNKIISLDEHAGNLICEAGCVLETLQDYAWERGYTMPLDLGAKGSCQIGGNVATNAGGLRYLRYGSLHGTVLGLEVVLADGTVLDNLTALRKDNTGYDIKQLFIGSEGTLGVITGVAMALPRAPTSVQLAFLGCDSFEAVLETFGAAKRDlGEVLSAVEFLDSESLELVTAHgVRAPLEGNCRHYMLIELSGSNEAHDSEklSTFLENVMESGAVADGTIAQDTTQSQGIWKVREGITEALSKSG-AVYKYDVSIPLTELYSLVEEMRVRLEPHGALVSGFGHLGDGNLHL-NIHTPGVFEKSAEVHAAIEPfVFEWIAQRRGSISAEHGIGVMKPAFLHMSKTSQMINVMQGIKNQLDPKNIMNPYK 510
                 78899****************************************************************************************************************************************************************************9999****99999876654326677899********9887651555577888999******999876555448899************************************976.68899****************866688888899***********9.555555555555566655533899999***********************************************98 PP

>> TIGR01678  FAD_lactone_ox: sugar 1,4-lactone oxidases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.0   0.0   3.7e-15     3e-12       6     176 ..      83     262 ..      79     269 .. 0.84

  Alignments for each domain:
  == domain 1    score: 44.0 bits;  conditional E-value: 3.7e-15
   TIGR01678   6 nWakiysakperyfqPksveevrellksareaekklkvvGs..GhsPsdivvtdgylvsldklnkvlkfdeekaditveaGirlyqlneildekGysls.nlGsisevsvaGiistgthgs.slkhgllssqvvaltivladGellelse..erdkdvfkaarvsl...GalGiivsvti 176
                 +W + y  +++    P s  ev  +l+  +e++  ++  G+  G     + v d+ ++sl ++nk++++de+  ++  eaG  l  l+++  e+Gy+++  lG+     + G ++t + g   l++g l   v  l +vladG +l       +d+  +   ++ +   G+lG+i  v++
  MMETSP1137-20121227|6888_1  83 DWMRKYCGESKLALRPGSTGEVSKVLAFCNEHNIAVVPQGGntGLVGGSVPVRDEVVLSLSRMNKIISLDEHAGNLICEAGCVLETLQDYAWERGYTMPlDLGAKGSCQIGGNVATNAGGLrYLRYGSLHGTVLGLEVVLADGTVLDNLTalRKDNTGYDIKQLFIgseGTLGVITGVAM 262
                 799***********************99999888887777533777899*************************************************956***************999862689*******************986433013344446666665511157888877665 PP

>> TIGR01679  bact_FAD_ox: FAD-linked oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.2   0.1   2.1e-13   1.7e-10       4     170 ..      84     262 ..      82     273 .. 0.82

  Alignments for each domain:
  == domain 1    score: 38.2 bits;  conditional E-value: 2.1e-13
   TIGR01679   4 WsGvqvaePaaivaPkdegeladvvkvaakp.vravGsGhsf....tdlaktdGtlvsleklegvvdvdqqkdeatvkaGtrlgalgpllaekgrgle.nlgdidkqsigGalgtathGt.GvklqalharvvslrlvtasGkvldlsea...ddq..eiflaarvslGalGvisqvtl 170
                 W      e ++ ++P + ge+++v++  ++  + +v  G        ++   d +++sl +++++++ d++ ++ + +aG+ l +l     e+g +++ +lg      igG ++t + G   ++ ++lh+ v +l +v a G vld   a   d+   +i +    s G+lGvi+ v +
  MMETSP1137-20121227|6888_1  84 WMRKYCGESKLALRPGSTGEVSKVLAFCNEHnIAVVPQGGNTglvgGSVPVRDEVVLSLSRMNKIISLDEHAGNLICEAGCVLETLQDYAWERGYTMPlDLGAKGSCQIGGNVATNAGGLrYLRYGSLHGTVLGLEVVLADGTVLDNLTAlrkDNTgyDIKQLFIGSEGTLGVITGVAM 262
                 555566678899**************998876777766544311114566789*******************************************985799999999*******999962589*********************9544322133222677777778999****99988 PP

>> TIGR01677  pln_FAD_oxido: plant-specific FAD-dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.9   0.0   3.4e-09   2.8e-06      40     238 ..      98     290 ..      69     300 .. 0.72

  Alignments for each domain:
  == domain 1    score: 23.9 bits;  conditional E-value: 3.4e-09
   TIGR01677  40 pateeelvkvvaaataknlkvkvvtryshsipklacpdgsdgeallistkrlnsvvavdaealtvtvesGvslrelieeaekaGlalpaapyweG.lsvGGllstGahGsslwGkGsavhdyvvelrlvvp.asaaeGfakvvvleeadddaelna.akvslGvlGviskvtlaleplfkrsvtyelrddsdledqvvkfgk 238
                 p +  e+ kv+a   ++n+ v          + l+  +    + +++s +r+n+++ +d +a ++  e+G  l  l + a + G ++p     +G   +GG ++t a G  +  + +++h  v +l +v   +++ +  + ++  + +     ++     s G lGvi+ v +al  +   sv   +   +++e  + +fg+
  MMETSP1137-20121227|6888_1  98 PGSTGEVSKVLAFCNEHNIAVVPQGGN----TGLVGGSVPVRDEVVLSLSRMNKIISLDEHAGNLICEAGCVLETLQDYAWERGYTMPLDLGAKGsCQIGGNVATNAGGLRYL-RYGSLHGTVLGLEVVLAdGTVLDNLTALRKDNTG---YDIKQlFIGSEGTLGVITGVAMALP-RAPTSVQLAFLGCDSFEAVLETFGA 290
                 666666666666666666554333332....2333333333446899*****************************************9998888467********9988776.67789********997514455555555544444...44444045599************95.5567888888877778777777765 PP

>> TIGR01676  GLDHase: galactonolactone dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   4.1e-05     0.034      57     186 ..      87     220 ..      72     273 .. 0.78

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 4.1e-05
   TIGR01676  57 thevltrvflqpedleeleqvvktanekkarvrpvg..sglspngiglsrlgmvnlalmdkvlevdkekkrvrvqagirvqqlvdaikeygltlq.nfasireqqiggivqvgahgtg.aklppideqviamkl 186
                  +   ++  l+p +  e+ +v+  +ne++  v p g  +gl    + +    ++ l+ m+k++ +d+   ++  +ag  ++ l d   e g t+  ++ +    qigg v   a g    +   +   v+ + +
  MMETSP1137-20121227|6888_1  87 KYCGESKLALRPGSTGEVSKVLAFCNEHNIAVVPQGgnTGLVGGSVPVRDEVVLSLSRMNKIISLDEHAGNLICEAGCVLETLQDYAWERGYTMPlDLGAKGSCQIGGNVATNAGGLRyLRYGSLHGTVLGLEV 220
                 555566777889999999****************984458888888888889999************************************9995367888899****99999888541355556666665555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (522 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       117  (0.0285227); expected 82.0 (0.02)
Passed bias filter:                      107  (0.0260848); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.34u 0.24s 00:00:00.58 Elapsed: 00:00:00.40
# Mc/sec: 1722.46
//
Query:       MMETSP1137-20121227|6889_1  [L=1013]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.3e-68  228.9   0.1    9.9e-57  190.6   0.0    2.3  2  TIGR02766 crypt_chrom_pln: cryptochrome, plant family
    5.4e-52  175.1   0.0    1.3e-48  163.9   0.0    2.1  2  TIGR03556 photolyase_8HDF: deoxyribodipyrimidine photo-lyase, 8-HDF type
    4.5e-38  129.0   0.0    6.6e-32  108.7   0.0    2.2  2  TIGR02765 crypto_DASH: cryptochrome, DASH family
    8.7e-05   19.8   0.1    0.00025   18.3   0.1    1.6  1  TIGR00591 phr2: deoxyribodipyrimidine photolyase


Domain annotation for each model (and alignments):
>> TIGR02766  crypt_chrom_pln: cryptochrome, plant family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.1   0.1     7e-13   7.2e-10       4      78 ..     381     455 ..     378     461 .. 0.91
   2 !  190.6   0.0   9.7e-60   9.9e-57      68     478 ..     514     916 ..     506     918 .. 0.87

  Alignments for each domain:
  == domain 1    score: 36.1 bits;  conditional E-value: 7e-13
   TIGR02766   4 vwfrrdlrvednpalaaaareg.evlpvfvwapeeegqfypgrvsrwwlkqslahldqslkslgaklvlkrsedtv 78 
                 v ++ dlr+ d   la aar+g +v+ +fvw p + g++    +   wl+ sla+ld++l+++g++l+l+ + + +
  MMETSP1137-20121227|6889_1 381 VNIQNDLRLSDHAPLAVAARAGgPVVCAFVW-PRQRGRWGVHGAQEAWLRASLARLDSALRAIGSRLILRCAPSGL 455
                 66789***************9889*******.899*****999*************************99876665 PP

  == domain 2    score: 190.6 bits;  conditional E-value: 9.7e-60
   TIGR02766  68 klvlkrsedtvaalldvvkstgatklvfnhlydpvslvrdhkvkeklaakgisvqsfnadllyepwevvde...kgkaftsfaaywekclelpida.spllppkklvp...vtasedvsacsvddlvleddsekssnallarawspgwsnadklleefiek.qlleysknrkkvdsa.stsllspylhfgevsvrkvfqlvrlkqivwanegnseaeesvelflrsiglreysrylsfnfpfsheksllahlkffpwkvdeekfkawrqgrtgyplvdagmrelwatgwlhdrirvvvssfavkvlllpwkwgmkyfwdtlldadlesdilgwqyisgslpdgreldrldnpelegakydpegeyvrrwlpelarlptewihhpwdapesvlkaagvelgsnypkpiv.dldaarelleea 478
                 +lv   +++  a +l++ ++  a+++++   y+p     +  v   l a g  v+ + + llyep  v      +g  + ++ ++ + c      +  pl+pp  l p    +as ++ ac++d  +  d       + l   w    ++a   +e f++  +l  y  +r ++d   + s lspyl fg++s r++++ v+   +           e  + f r +  r+ + +    fp     ++  h   + w+ d   ++ w++g+tg p vda mr l+atgwlh+ +r+vv+sf+v +l + w+ g  +f dtl+dad+  + + wq    s  d  ++  +  pe      dp+g + r+wlpela+lpt+ +h pw a   vl aag+elg++yp+ +v dl +ar++   a
  MMETSP1137-20121227|6889_1 514 ALVAAEAASVAAEMLSLANECDACEVLWHRSYEPDEERVERAVSAALHASGRRVREMPGRLLYEPHTVNLSggfNGGHWGTLMPFLRACERQGPPPpLPLPPPTSLPPpanWPASLALEACAADGTAARD-----WATELLAYWDVSEEKAREQMELFVHAgGLQGYETRRSRADVKgTVSTLSPYLRFGQLSPRQLYHAVKASPLPR---------ELKKTFSRRLHWRDLAYFHLSAFPDMPSFPIRRHYAAHAWVGDSAALRRWQRGQTGXPXVDASMRCLYATGWLHQSLRMVVASFLVEYLGINWTKGAEWFHDTLVDADVGINSMMWQNAGRSGIDQWNF--VLSPES--GSQDPSGAFCRTWLPELAKLPTKQLHTPWLASPQVLAAAGIELGVDYPHRMVaDLTEARSRTVSA 916
                 6788888888999**********************9999999**************************987223456789999******87755554999999999872223467888899888766544.....44446678****************8616778999999998652679*******************99877754.........4445688999999999999999************************************************************************************************99998887766..667864..456*********************************************88764899999987666 PP

>> TIGR03556  photolyase_8HDF: deoxyribodipyrimidine photo-lyase, 8-HDF type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.9   0.0   0.00013      0.14       9      78 ..     385     452 ..     380     458 .. 0.89
   2 !  163.9   0.0   1.3e-51   1.3e-48      83     440 ..     528     881 ..     514     903 .. 0.86

  Alignments for each domain:
  == domain 1    score: 8.9 bits;  conditional E-value: 0.00013
   TIGR03556   9 rdlrlsdnlglaaarqksakvvglfcldekilkaddiaparvayllgclqelqerykrlgsellilrgdp 78 
                  dlrlsd+  la a + +  vv  f    +   +  +  a+ a+l  +l +l+++ + +gs+l ilr+ p
  MMETSP1137-20121227|6889_1 385 NDLRLSDHAPLAVAARAGGPVVCAFVWPRQ-RGRWGVHGAQEAWLRASLARLDSALRAIGSRL-ILRCAP 452
                 7************************98665.67889*************************97.566666 PP

  == domain 2    score: 163.9 bits;  conditional E-value: 1.3e-51
   TIGR03556  83 pklakaleakavywnldvepysrkrdravaaalkekgiavktawdqllhspeeiltk...sgkpytvytpfwknwsskkkaepvetpkeleglteaekeaiaklgvialptakdlgfewdadlil..epgeaaaeakleefvd.kaieeyqeqrnfpaldgt.sqlsaalkfgvigirtvwqatlealeasrseearesirtwqqelawrefyqhalysfpeladgpyrekfkefpwenneahfqawcegktgypivdaamrqlnetgwmhnrcrmivasfltkdliinwqwgekyfmqklidgdlaannggwqwsassgmdpkplrifnpasqaqkfdpeaeyirrwlpelrsldtkdlvtgki 440
                   la++ +a  v w++  ep  ++ +rav aal++ g +v+++  +ll++p+ +  +   +g  +    pf +  + +  + p+  p   +   +a+    a+l + a         +w ++l+   +  e+ a++++e fv+  +++ y+ +r    ++gt s+ls+ l+fg +++r++++a ++      s   re  +t+ + l wr++  + l  fp++ + p r +++   w  + a ++ w +g+tg p vda+mr l  tgw+h+  rm+vasfl+  l inw +g ++f ++l+d d+  n   wq +  sg+d   + ++ p s +q  dp + + r+wlpel++l tk+l t  +
  MMETSP1137-20121227|6889_1 528 LSLANECDACEVLWHRSYEPDEERVERAVSAALHASGRRVREMPGRLLYEPHTVNLSggfNGGHWGTLMPFLRACERQGPPPPLPLPPPTSLPPPANWP--ASLALEACAADGTAARDWATELLAywDVSEEKAREQMELFVHaGGLQGYETRRSRADVKGTvSTLSPYLRFGQLSPRQLYHAVKA------SPLPRELKKTFSRRLHWRDLAYFHLSAFPDMPSFPIRRHYAAHAWVGDSAALRRWQRGQTGXPXVDASMRCLYATGWLHQSLRMVVASFLVEYLGINWTKGAEWFHDTLVDADVGINSMMWQNAGRSGIDQWNF-VLSPESGSQ--DPSGAFCRTWLPELAKLPTKQLHTPWL 881
                 4799*************************************************9866222456789999****99988777777666333322333333..33444444444455567888886422679***********96268***************9789***************998765......34445566899***********************************************************************************************************************8875.789999998..9*******************9988655 PP

>> TIGR02765  crypto_DASH: cryptochrome, DASH family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.0   2.1e-07   0.00021       6      83 ..     382     452 ..     378     455 .. 0.88
   2 !  108.7   0.0   6.5e-35   6.6e-32      90     431 .]     529     868 ..     512     868 .. 0.80

  Alignments for each domain:
  == domain 1    score: 18.1 bits;  conditional E-value: 2.1e-07
   TIGR02765   6 lfrndLRleDnellakasskeeelvpvyvfdarqiklsavaglaklGkarakFlaesvadLktsLkklGsdLlvragk 83 
                  ++ndLRl+D++ la a++    +v+ +v++ ++ +   ++       a++ +l +s+a L+++L+++Gs+L++r+ +
  MMETSP1137-20121227|6889_1 382 NIQNDLRLSDHAPLAVAARAGGPVVCAFVWPRQRGRWGVHG-------AQEAWLRASLARLDSALRAIGSRLILRCAP 452
                 579****************************9988744443.......56789*********************9875 PP

  == domain 2    score: 108.7 bits;  conditional E-value: 6.5e-35
   TIGR02765  90 elvkelkvravflteeegseeksvekkveealaklkie.eklwgstllheddlpfe...ledlPdvftqfRkkveaklkv.rksleapeklpalpksedeganlP..tleelveaeseedersslefkGGetsalarvkeyflskslksYketRngllgvdystklspwLalGcvsarqihealkrYekergendstywvifeLlWRdyfrflalkygdk.lFrleGlrgkkaktkedekilekwkegttgyplvdanmreLaatGymsnRgRqnvasflvkelgldWryGaewfetlLvDyDvssnwgnWqylaGvgndpRgaRqFnlekqakdYDpdgeyvktWvkel 431
                 +l++e ++ +v  +++   +e++ve++v++al+ ++++ +++ g+ l++ + + ++         +   f ++ e++      +l+ p++lp+  +   ++a+l    ++  ++a+ +  ++    +   e++a ++++ ++  ++l+ Y   R   +     + lsp+L +G +s+rq+++a+k+    r   +  ++ +  L WRd  +f    + d   F +         +  d+  l++w++g+tg p vda+mr L atG++    R +vasflv+ lg++W  Gaewf  +LvD Dv+ n   Wq +   g d   +  F l   + + Dp g++ +tW++el
  MMETSP1137-20121227|6889_1 529 SLANECDACEVLWHRSYEPDEERVERAVSAALHASGRRvREMPGRLLYEPHTVNLSggfNGGHWGTLMPFLRACERQGPPpPLPLPPPTSLPPPAN---WPASLAleACAADGTAARDWATELLAYWDVSEEKAREQMELFVHAGGLQGYETRRSRADVKGTVSTLSPYLRFGQLSPRQLYHAVKASPLPR---ELKKTFSRRLHWRDLAYFHLSAFPDMpSFPIRRHY-AAHAWVGDSAALRRWQRGQTGXPXVDASMRCLYATGWLHQSLRMVVASFLVEYLGINWTKGAEWFHDTLVDADVGINSMMWQNAGRSGID---QWNFVLSPESGSQDPSGAFCRTWLPEL 868
                 566667777788888888888888888888888887776777888888888888877733456677888888888854431346677777777654...4443332255555555555566666677889********************988888887888889*******************9876554...5556778899****888877777664256666544.45679*****************************************************************************98777888...778999999***************985 PP

>> TIGR00591  phr2: deoxyribodipyrimidine photolyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.1   2.4e-07   0.00025     228     301 ..     659     732 ..     650     814 .. 0.61

  Alignments for each domain:
  == domain 1    score: 18.3 bits;  conditional E-value: 2.4e-07
   TIGR00591 228 glevleefisk.rLklfeekrndP.nkdalsnlsPylhfGqlsaqrvalevkrarsaesesvdefleelivrreLa 301
                 + e++e f++   L+ +e++r    +k + s lsPyl+fGqls++++ ++vk   s  + + ++     +  r+La
  MMETSP1137-20121227|6889_1 659 AREQMELFVHAgGLQGYETRRSRAdVKGTVSTLSPYLRFGQLSPRQLYHAVK--ASPLPRELKKTFSRRLHWRDLA 732
                 56778889986369******987615689*****************999988..3344444444444444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1013 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       109  (0.0265724); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.63u 0.26s 00:00:00.89 Elapsed: 00:00:00.46
# Mc/sec: 2906.63
//
Query:       MMETSP1137-20121227|6890_1  [L=243]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0044   13.5   0.1     0.0053   13.2   0.1    1.1  1  TIGR00990 3a0801s09: mitochondrial precursor proteins import receptor


Domain annotation for each model (and alignments):
>> TIGR00990  3a0801s09: mitochondrial precursor proteins import receptor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   0.1   1.3e-06    0.0053     141     214 ..       6      80 ..       1     106 [. 0.89

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 1.3e-06
   TIGR00990 141 kdfdkaielyskalllked.Pvyysnraacynaladlekvvedttaaleldpdyvkalnrranaydqlgkyadal 214
                  d  ka+el + a+ l     v y nra  +  l++    ++d+  ++ l p  +k  +r   a  +l +y +a 
  MMETSP1137-20121227|6890_1   6 TDASKAVELLTSAIALDSKmAVLYNNRAYAHSLLSQHVLALADARMSMVLAPGSSKGCLRAGRALLGLERYEEAX 80 
                 567899*******999764389*************************************************9985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (243 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        76  (0.0185275); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.23u 0.19s 00:00:00.42 Elapsed: 00:00:00.34
# Mc/sec: 943.33
//
Query:       MMETSP1137-20121227|6891_1  [L=164]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (164 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       143  (0.034861); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.18s 00:00:00.35 Elapsed: 00:00:00.38
# Mc/sec: 569.64
//
Query:       MMETSP1137-20121227|6892_1  [L=71]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (71 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       136  (0.0331546); expected 82.0 (0.02)
Passed bias filter:                      128  (0.0312043); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.18s 00:00:00.32 Elapsed: 00:00:00.24
# Mc/sec: 390.47
//
Query:       MMETSP1137-20121227|6893_1  [L=166]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (166 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        75  (0.0182838); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.16s 00:00:00.34 Elapsed: 00:00:00.28
# Mc/sec: 755.52
//
Query:       MMETSP1137-20121227|6894_1  [L=167]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (167 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        70  (0.0170648); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.14s 00:00:00.32 Elapsed: 00:00:00.31
# Mc/sec: 711.04
//
Query:       MMETSP1137-20121227|6895_1  [L=136]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (136 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        72  (0.0175524); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.16s 00:00:00.33 Elapsed: 00:00:00.28
# Mc/sec: 641.09
//
Query:       MMETSP1137-20121227|6896_1  [L=404]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (404 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        55  (0.0134081); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.15s 00:00:00.43 Elapsed: 00:00:00.39
# Mc/sec: 1367.27
//
Query:       MMETSP1137-20121227|6897_1  [L=110]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (110 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        26  (0.00633837); expected 82.0 (0.02)
Passed bias filter:                       26  (0.00633837); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.17s 00:00:00.32 Elapsed: 00:00:00.30
# Mc/sec: 483.96
//
Query:       MMETSP1137-20121227|6898_1  [L=171]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (171 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        60  (0.014627); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.16s 00:00:00.33 Elapsed: 00:00:00.30
# Mc/sec: 752.34
//
Query:       MMETSP1137-20121227|6899_1  [L=291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.8e-06   24.8   0.0      4e-06   24.3   0.0    1.2  1  TIGR00406 prmA: ribosomal protein L11 methyltransferase
    0.00083   16.9   0.0     0.0035   14.9   0.0    2.0  2  TIGR00537 hemK_rel_arch: putative methylase
     0.0042   14.4   0.0     0.0062   13.8   0.0    1.4  1  TIGR02021 BchM-ChlM: magnesium protoporphyrin O-methyltransferase
     0.0062   13.7   0.0      0.014   12.5   0.0    1.6  1  TIGR01983 UbiG: 3-demethylubiquinone-9 3-O-methyltransferase
  ------ inclusion threshold ------
       0.01   13.5   0.0      0.023   12.3   0.0    1.7  1  TIGR02072 BioC: biotin biosynthesis protein BioC
      0.012   12.9   0.0      0.033   11.5   0.0    1.7  2  TIGR03534 RF_mod_PrmC: protein-(glutamine-N5) methyltransferase, release factor-specific


Domain annotation for each model (and alignments):
>> TIGR00406  prmA: ribosomal protein L11 methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.3   0.0   5.9e-09     4e-06     160     212 ..     123     184 ..     100     207 .. 0.83

  Alignments for each domain:
  == domain 1    score: 24.3 bits;  conditional E-value: 5.9e-09
   TIGR00406 160 dkkviDvGcGSGiLsiaalklgaakvvavDiDpla.........vesarkNlelNqvsdllq 212
                  + v+++GcG G++s+aa++ ga+ v+a D+ + +         +e+ r+N++ N+v  ++ 
  MMETSP1137-20121227|6899_1 123 AELVLELGCGVGLVSVAAALSGAKHVFATDLQAESeagegpdglIENVRHNAHINGVAARVT 184
                 4789**************************9764333555666699***********98875 PP

>> TIGR00537  hemK_rel_arch: putative methylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   5.1e-06    0.0035      18      70 ..     121     183 ..     107     191 .. 0.70
   2 ?   -1.9   0.0      0.75   5.1e+02     122     140 ..     220     238 ..     216     247 .. 0.82

  Alignments for each domain:
  == domain 1    score: 14.9 bits;  conditional E-value: 5.1e-06
   TIGR00537  18 lknddvleiGaGtGlvairlkekgk.kivatdinPfa.........vkllkenaklnnveldv 70 
                   ++ vle+G G Glv+++++  g+  + atd++  +         +  +++na +n+v  +v
  MMETSP1137-20121227|6899_1 121 ASAELVLELGCGVGLVSVAAALSGAkHVFATDLQAESeagegpdglIENVRHNAHINGVAARV 183
                 45566***************99998789****9754311222222245667777777766655 PP

  == domain 2    score: -1.9 bits;  conditional E-value: 0.75
   TIGR00537 122 fldelpeilkegGrvqlvq 140
                 +++ l+++l++gG + l+ 
  MMETSP1137-20121227|6899_1 220 LVHALKHHLAPGGTALLIG 238
                 5678999*******99985 PP

>> TIGR02021  BchM-ChlM: magnesium protoporphyrin O-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.0   9.1e-06    0.0062      47      86 ..     113     155 ..     100     228 .. 0.83

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 9.1e-06
   TIGR02021  47 wlpkd..slkGkkvlDAGCGtGllsielAkrGa.ivkavDise 86 
                 wl +   + + + vl+ GCG Gl+s+  A +Ga +v a D+ +
  MMETSP1137-20121227|6899_1 113 WLVDSseAASAELVLELGCGVGLVSVAAALSGAkHVFATDLQA 155
                 55544334566789******************95699*99965 PP

>> TIGR01983  UbiG: 3-demethylubiquinone-9 3-O-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.5   0.0   2.1e-05     0.014      51     149 ..     124     234 ..     106     244 .. 0.64

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 2.1e-05
   TIGR01983  51 lkvlDvGcGgGllseslarlgae.vtgiDlsee.........lievAklhakkdplkkieyelksveelaeee...kesfDvvlamEvlEHvadleeilkecaellkpggil 149
                   vl++GcG Gl+s + a +ga+ v + Dl +e         lie  +  a+ ++++  + +++ ++ + e++     s D+v+ ++++   +++e +++++ ++l pgg+ 
  MMETSP1137-20121227|6899_1 124 ELVLELGCGVGLVSVAAALSGAKhVFATDLQAEseagegpdgLIENVRHNAHINGVA-ARVTARPLDWHLESSylaPCSCDLVVGSDLVYYPENVEPLVHALKHHLAPGGTA 234
                 569*******************99*9*999865222222222355555555556554.333333333333332222445666666666666666666666666666666655 PP

>> TIGR02072  BioC: biotin biosynthesis protein BioC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   3.4e-05     0.023      25      72 ..     112     159 ..     106     273 .. 0.70

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 3.4e-05
   TIGR02072  25 ellkekr.kfepakvLdiGcGtGiltrallkrfpqaelialDiseemle 72 
                 ++l ++  +   + vL++GcG G+++ a + +  +  ++a+D+ +e ++
  MMETSP1137-20121227|6899_1 112 QWLVDSSeAASAELVLELGCGVGLVSVAAALSGAKH-VFATDLQAESEA 159
                 55666555555678*********9998888777665.99***9988765 PP

>> TIGR03534  RF_mod_PrmC: protein-(glutamine-N5) methyltransferase, release factor-specific
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   4.8e-05     0.033      80     160 ..     114     205 ..     105     208 .. 0.68
   2 ?   -2.1   0.0      0.67   4.6e+02     198     229 ..     217     247 ..     215     260 .. 0.77

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 4.8e-05
   TIGR03534  80 aleelkkkeklkvlDlgtGsGaIalalakelpdakviavDiseeA.........lkvarkNakrlglke.veflksdlleal..eekgkfdli 160
                  ++  + +++  vl+lg+G G + +a a      +v+a+D+++e+         ++  r+Na+ +g+++ v++   d++ +    +  ++dl+
  MMETSP1137-20121227|6899_1 114 LVDSSEAASAELVLELGCGVGLVSVAAALS-GAKHVFATDLQAESeagegpdglIENVRHNAHINGVAArVTARPLDWHLESsyLAPCSCDLV 205
                 555555556678***********9998887.56678888888765334444444677888888888887888888888633322345556655 PP

  == domain 2    score: -2.1 bits;  conditional E-value: 0.67
   TIGR03534 198 yrriaeeaakllkeggllllEigekqaeavae 229
                 ++ +++ ++++l++gg+ ll ig + a++++e
  MMETSP1137-20121227|6899_1 217 VEPLVHALKHHLAPGGTALL-IGPRRAQQLTE 247
                 57789999999999999877.78888777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (291 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        85  (0.0207216); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                        18  (0.0043881); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.25u 0.17s 00:00:00.42 Elapsed: 00:00:01.10
# Mc/sec: 349.17
//
Query:       MMETSP1137-20121227|6900_1  [L=286]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (286 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        71  (0.0173086); expected 82.0 (0.02)
Passed bias filter:                       42  (0.0102389); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.14s 00:00:00.36 Elapsed: 00:00:00.40
# Mc/sec: 943.72
//
Query:       MMETSP1137-20121227|6902_1  [L=161]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (161 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        71  (0.0173086); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.14s 00:00:00.33 Elapsed: 00:00:00.32
# Mc/sec: 664.07
//
Query:       MMETSP1137-20121227|6903_1  [L=275]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (275 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       194  (0.047294); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.14s 00:00:00.40 Elapsed: 00:00:00.45
# Mc/sec: 806.60
//
Query:       MMETSP1137-20121227|6905_1  [L=270]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      2e-12   45.6   0.0    2.8e-12   45.1   0.0    1.3  1  TIGR00401 msrA: peptide-methionine (S)-S-oxide reductase


Domain annotation for each model (and alignments):
>> TIGR00401  msrA: peptide-methionine (S)-S-oxide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.1   0.0   6.9e-16   2.8e-12      51     152 ..     115     218 ..      78     219 .. 0.90

  Alignments for each domain:
  == domain 1    score: 45.1 bits;  conditional E-value: 6.9e-16
   TIGR00401  51 aevvkveydpkvvsleeLldvffevidPttanrqgnDkGtqyrsgiyalsdedekaaeaskerlqesakyk.kkivteiekae..nfyeaeeyhqqylkknPkgy 152
                   vv+v yd ++v+++ +l +f++ +dPt + +qg+  Gt   ++i+  sde++ +a++s +rl++s+ y+ k+i+t +++a    f  +    qq++  nP+ y
  MMETSP1137-20121227|6905_1 115 MPVVEVRYDTRKVGYKRILGAFWRGVDPTRTAQQGQ-FGTPGPTVIWSGSDEERLLAQESLRRLDASGIYRgKPIATLVRDAAgaRFSASPPAEQQWYLSNPEAY 218
                 569**************************9999985.8*******************************96489***9987742256666778999999***988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (270 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        46  (0.011214); expected 82.0 (0.02)
Passed bias filter:                       44  (0.0107265); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.22u 0.14s 00:00:00.36 Elapsed: 00:00:00.56
# Mc/sec: 636.38
//
Query:       MMETSP1137-20121227|6907_1  [L=684]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (684 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        83  (0.020234); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.17s 00:00:00.59 Elapsed: 00:00:00.73
# Mc/sec: 1236.72
//
Query:       MMETSP1137-20121227|6908_1  [L=117]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (117 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        62  (0.0151146); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.18s 00:00:00.34 Elapsed: 00:00:00.25
# Mc/sec: 617.71
//
Query:       MMETSP1137-20121227|6910_1  [L=178]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (178 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       154  (0.0375427); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.17s 00:00:00.36 Elapsed: 00:00:00.26
# Mc/sec: 903.62
//
Query:       MMETSP1137-20121227|6911_1  [L=127]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (127 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        81  (0.0197465); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.17s 00:00:00.34 Elapsed: 00:00:00.40
# Mc/sec: 419.07
//
Query:       MMETSP1137-20121227|6912_1  [L=140]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (140 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        81  (0.0197465); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.16s 00:00:00.32 Elapsed: 00:00:00.37
# Mc/sec: 499.42
//
Query:       MMETSP1137-20121227|6913_1  [L=251]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.9e-12   43.7   0.0    1.7e-10   38.6   0.0    2.1  2  TIGR04109 heme_ox_HugZ: heme oxygenase, HugZ family


Domain annotation for each model (and alignments):
>> TIGR04109  heme_ox_HugZ: heme oxygenase, HugZ family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    3.0   0.0    0.0031        13     202     233 ..     122     154 ..     116     160 .. 0.81
   2 !   38.6   0.0   4.1e-14   1.7e-10       2      79 ..     168     248 ..     167     251 .] 0.90

  Alignments for each domain:
  == domain 1    score: 3.0 bits;  conditional E-value: 0.0031
   TIGR04109 202 mkDfylvkl.elkkGRfvkGfGqaYdidggeit 233
                 + Df   k+ elk  Rfv Gf +a d+  +e +
  MMETSP1137-20121227|6913_1 122 FGDFSWFKMdELKAVRFVGGFARAGDMTPEEYM 154
                 568888888469999*********999876655 PP

  == domain 2    score: 38.6 bits;  conditional E-value: 4.1e-14
   TIGR04109   2 iiehmnedhkddlavlvkkfgkveevtnvllksvdedgldlkvngqe...klrveflkkaedegelkneiielassvkkeq 79 
                 ++ehmn+dh+d  +++v+++ +  ev+++++ ++d  g++++v  +    klr++f++ ae  +++k+ i+e+++   k +
  MMETSP1137-20121227|6913_1 168 VMEHMNADHSDATTLMVQHYIGLPEVEDAKVAALDRLGMTVQVTRKGqsfKLRLPFPRPAESRKDVKTLIVEMTQASAKAT 248
                 689**************************************99865433479*********************99877665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (251 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        85  (0.0207216); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.23u 0.12s 00:00:00.35 Elapsed: 00:00:00.34
# Mc/sec: 974.39
//
Query:       MMETSP1137-20121227|6914_1  [L=207]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (207 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        45  (0.0109703); expected 82.0 (0.02)
Passed bias filter:                       42  (0.0102389); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.13s 00:00:00.32 Elapsed: 00:00:00.33
# Mc/sec: 827.93
//
Query:       MMETSP1137-20121227|6915_1  [L=1244]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1244 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       157  (0.038274); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.69u 0.14s 00:00:00.83 Elapsed: 00:00:01.92
# Mc/sec: 855.18
//
Query:       MMETSP1137-20121227|6916_1  [L=203]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (203 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        86  (0.0209654); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.14s 00:00:00.35 Elapsed: 00:00:00.37
# Mc/sec: 724.16
//
Query:       MMETSP1137-20121227|6919_1  [L=39]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (39 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        56  (0.0136519); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.15s 00:00:00.28 Elapsed: 00:00:00.34
# Mc/sec: 151.40
//
Query:       MMETSP1137-20121227|6920_1  [L=199]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (199 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        87  (0.0212092); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.15s 00:00:00.35 Elapsed: 00:00:00.24
# Mc/sec: 1094.41
//
Query:       MMETSP1137-20121227|6921_1  [L=72]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        49  (0.0119454); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.15s 00:00:00.28 Elapsed: 00:00:00.26
# Mc/sec: 365.51
//
Query:       MMETSP1137-20121227|6922_1  [L=398]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (398 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       190  (0.0463189); expected 82.0 (0.02)
Passed bias filter:                      106  (0.0258411); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.14s 00:00:00.44 Elapsed: 00:00:00.42
# Mc/sec: 1250.75
//
Query:       MMETSP1137-20121227|6923_1  [L=104]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (104 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        50  (0.0121892); expected 82.0 (0.02)
Passed bias filter:                       44  (0.0107265); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.28
# Mc/sec: 490.25
//
Query:       MMETSP1137-20121227|6924_1  [L=70]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        26  (0.00633837); expected 82.0 (0.02)
Passed bias filter:                       24  (0.0058508); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.14s 00:00:00.26 Elapsed: 00:00:00.27
# Mc/sec: 342.19
//
Query:       MMETSP1137-20121227|6925_1  [L=318]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (318 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       208  (0.050707); expected 82.0 (0.02)
Passed bias filter:                      154  (0.0375427); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.16s 00:00:00.46 Elapsed: 00:00:00.45
# Mc/sec: 932.72
//
Query:       MMETSP1137-20121227|6926_1  [L=419]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.03   11.4   6.4     0.0089   13.1   2.0    1.8  3  TIGR00822 EII-Sor: PTS system, mannose/fructose/sorbose family, IIC component


Domain annotation for each model (and alignments):
>> TIGR00822  EII-Sor: PTS system, mannose/fructose/sorbose family, IIC component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.9   0.0      0.35   1.4e+03      87     104 ..     132     149 ..     126     153 .. 0.68
   2 ?   13.1   2.0   2.2e-06    0.0089      27      96 ..     189     256 ..     183     290 .. 0.82
   3 ?   -2.2   0.0       0.1   4.1e+02      26      61 ..     269     303 ..     264     311 .. 0.81

  Alignments for each domain:
  == domain 1    score: -3.9 bits;  conditional E-value: 0.35
   TIGR00822  87 sadqsikagialalplaa 104
                  ++ +  ++ial+++ a+
  MMETSP1137-20121227|6926_1 132 NSHFDSPTAIALGVAAAL 149
                 567777788888877654 PP

  == domain 2    score: 13.1 bits;  conditional E-value: 2.2e-06
   TIGR00822  27 lqlhrPliaCtlvGlvlGdlktGiilGGtlelialGlmnvGaaqaPdaal..asiistilvisadqsikagi 96 
                 + l+   ++Ct++G+v    +  +  G ++  ++lGl   G + +P + +  a+++s++l  +++ +i+ g 
  MMETSP1137-20121227|6926_1 189 FALFVSAVMCTITGVV----EETVFRGQVMPNVFLGLAANGWVTSPHTGIaaAAVLSSVLFAAGHLNIGGGF 256
                 6677778899999987....567889999999***************97622579*************9886 PP

  == domain 3    score: -2.2 bits;  conditional E-value: 0.1
   TIGR00822  26 elqlhrPliaCtlvGlvlGdlktGiilGGtlelial 61 
                  lq++  l   tl Gl  Gdl + i+   + +l al
  MMETSP1137-20121227|6926_1 269 TLQFFNGLTFATLFGL-TGDLTAPIVAHALYDLSAL 303
                 6899999999999997.5999999998888888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (419 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.29u 0.11s 00:00:00.40 Elapsed: 00:00:00.48
# Mc/sec: 1152.15
//
Query:       MMETSP1137-20121227|6927_1  [L=282]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (282 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        97  (0.023647); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.14s 00:00:00.37 Elapsed: 00:00:00.44
# Mc/sec: 845.93
//
Query:       MMETSP1137-20121227|6928_1  [L=688]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.9e-07   29.8   0.0    3.1e-07   29.1   0.0    1.3  1  TIGR01681 HAD-SF-IIIC: HAD phosphatase, family IIIC
    4.1e-07   27.6   0.7    1.2e-06   26.0   0.4    1.9  1  TIGR01449 PGP_bact: phosphoglycolate phosphatase, bacterial
    3.1e-06   25.2   0.0    4.5e-06   24.7   0.0    1.2  1  TIGR01685 MDP-1: magnesium-dependent phosphatase-1
    0.00015   18.9   0.0     0.0003   17.8   0.0    1.4  1  TIGR01686 FkbH: FkbH domain
     0.0032   15.5   0.0     0.0078   14.2   0.0    1.7  1  TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3


Domain annotation for each model (and alignments):
>> TIGR01681  HAD-SF-IIIC: HAD phosphatase, family IIIC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.1   0.0   3.7e-10   3.1e-07       2     128 ..     139     265 ..     138     269 .. 0.80

  Alignments for each domain:
  == domain 1    score: 29.1 bits;  conditional E-value: 3.7e-10
   TIGR01681   2 vivfDlDnTLwtdeed.......vvkedpiedieltevtikeirdvLqelkkn...GvllalaSknddeevakellkikedYfdvilpkaelfldltigkrlpKskrlveilkklnsvlklksilfvDDlavnneev 128
                 v+v+DlD TLw++ +        v  e  + + e +e   +   ++L   +     Gvl+ +aS++ +e  a+ ll+ +  ++++++        + +  r+ K ++l+ ++++l+    l +++++DD ++n+++ 
  MMETSP1137-20121227|6928_1 139 VVVLDLDHTLWEGSCAdfvggewVDEERTMWNAETRERL-DLCEQALPLCRALvscGVLIGVASSTPAEALARTLLDKFG-LAEYVS------ACAIWPSREAKRDHLETLARTLQ--TPLSQLVLLDDVKANVNAA 265
                 8************99999999855555556665555544.6666666665555666*********************977.466655......5567777899*************..*************998765 PP

>> TIGR01449  PGP_bact: phosphoglycolate phosphatase, bacterial
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.0   0.4   1.5e-09   1.2e-06      94     199 ..     187     290 ..      77     298 .. 0.91

  Alignments for each domain:
  == domain 1    score: 26.0 bits;  conditional E-value: 1.5e-09
   TIGR01449  94 leaLrakGlrlglvtnkP.ealarplLellglakylevligGdslaqrkPdPePLllaaerlgvepaqmvyvGDsevDiaaArAAGlpsvlltyGYrygeaveelpa 199
                  +aL + G+ +g+    P ealar lL+ +gla+y+++       + r  + + L + a  l+    q v+  D +++++aArA G+  vl+  G + +e ve+l++
  MMETSP1137-20121227|6928_1 187 CRALVSCGVLIGVASSTPaEALARTLLDKFGLAEYVSACAIW---PSREAKRDHLETLARTLQTPLSQLVLLDDVKANVNAARAIGCVGVLVAQGLACQEVVEALQQ 290
                 4789999*********995589**************987655...55555666799999**************************************9999998875 PP

>> TIGR01685  MDP-1: magnesium-dependent phosphatase-1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.7   0.0   5.5e-09   4.5e-06       1     173 [.     136     292 ..     136     293 .. 0.85

  Alignments for each domain:
  == domain 1    score: 24.7 bits;  conditional E-value: 5.5e-09
   TIGR01685   1 lpkvivfDlDgTlWdhynisllkgPfKpvksensiiidkeGaeltlikevrdvLqslkdagvilaiasrndvpevareiLkifkikyaGkvvPlaelFdel.vekekpsKakqleeilkklkkkspvelkpkeilfiDdrsvnvrevekygvkvkyvesgedkksfkkileklk 173
                 lp v+v+DlD+TlW+  +    +g +  v++e+++ + +  ++l l ++   + + l   gv +++as + +   ar +L+ f +          e+ +   ++  +  K  +le++ + l+          +++++Dd + nv     +g   + v +g   +   + l++++
  MMETSP1137-20121227|6928_1 136 LPLVVVLDLDHTLWEGSCADFVGGEW--VDEERTMWNAETRERLDLCEQALPLCRALVSCGVLIGVASSTPAEALARTLLDKFGLA---------EYVSACaIWPSREAKRDHLETLARTLQTPL------SQLVLLDDVKANVNAARAIGCVGVLVAQGLACQEVVEALQQWR 292
                 5789********************87..666675567777889***************************9**********99998.........888875267777788888877777766555......899**********888888888888999988888888888887 PP

>> TIGR01686  FkbH: FkbH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.0   3.7e-07    0.0003       5     123 ..     139     269 ..     135     289 .. 0.71

  Alignments for each domain:
  == domain 1    score: 17.8 bits;  conditional E-value: 3.7e-07
   TIGR01686   5 vlvlDlDnTLwgGvvge.......dgveavdLse.......lrktlqeki...vtlkkqGvLlalaSkN.deddvkevlerrkdsllkaedfsllsi..aWePKseslrkiAkklNlgtdsllFiDDnpaElaevkiel 123
                 v+vlDlD TLw+G   +       d++ +            + ++ ++ +     l   GvL  +aS    e  ++ +l++     + ae+ s+  i    e K ++l  +A++l   +  l+ +DD  a ++  +  +
  MMETSP1137-20121227|6928_1 139 VVVLDLDHTLWEGSCADfvggewvDEERT----MwnaetreRLDLCEQALplcRALVSCGVLIGVASSTpAEALARTLLDK----FGLAEYVSACAIwpSREAKRDHLETLARTLQTPLSQLVLLDDVKANVNAARAIG 269
                 89***********7655322122222222....12233342333333433222567789*******876267899******....999999998877334589************************999988777655 PP

>> TIGR01509  HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.0   9.5e-06    0.0078     117     154 .]     238     275 ..     197     275 .. 0.89

  Alignments for each domain:
  == domain 1    score: 14.2 bits;  conditional E-value: 9.5e-06
   TIGR01509 117 ylqalkklglkpeeclfvdDsaagieaakaaGmktvlv 154
                 +++++++l  + ++ ++ dD +a++ aa+a+G+  vlv
  MMETSP1137-20121227|6928_1 238 LETLARTLQTPLSQLVLLDDVKANVNAARAIGCVGVLV 275
                 677889999999*********************99986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (688 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       111  (0.02706); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.48u 0.14s 00:00:00.62 Elapsed: 00:00:00.66
# Mc/sec: 1375.89
//
Query:       MMETSP1137-20121227|6929_1  [L=224]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.4e-45  152.2   0.0    3.2e-45  151.8   0.0    1.1  1  TIGR00151 ispF: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase


Domain annotation for each model (and alignments):
>> TIGR00151  ispF: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  151.8   0.0   7.8e-49   3.2e-45       1     153 [.      52     220 ..      52     222 .. 0.89

  Alignments for each domain:
  == domain 1    score: 151.8 bits;  conditional E-value: 7.8e-49
   TIGR00151   1 RiGlGfDvHrlveg....kplilgGveip......eekgllahSdgDvllHaltdallgalalgdiGklfpdtdkewkgadsaklLkkvvellkekgykisnvdvtiiaerPKlapk......ieamrekiaelLeieldevnvkatteeklgltGrgegiaaqavvll 153
                 RiG+G+D+Hr+++     +p++++Gv+++       e g++ahSdgDv+ H+++da+lgal++ diG+lfpd+d++ +gads+++++++++ ++++gy+i+nvdvt+i+++P+++ +      +e m +++a+lL++++++vnvka+t+ek+  +G+  ++++++v+++
  MMETSP1137-20121227|6929_1  52 RIGHGYDIHRMAPReeagQPVVISGVKFDgsdapdFELGCVAHSDGDVVYHSVVDAVLGALTMPDIGQLFPDNDPRLRGADSEIFMEEAYSRMEQRGYEIGNVDVTLICQKPRVNVEfngrqvKEMMIDNLARLLKADKSRVNVKARTHEKVDSVGECRALECHVVLVM 220
                 9**********99766779*********7322222456***************************************************************************9865222222456789***********************************99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (224 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       106  (0.0258411); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.20u 0.16s 00:00:00.36 Elapsed: 00:00:00.37
# Mc/sec: 799.07
//
Query:       MMETSP1137-20121227|6930_1  [L=45]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (45 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        38  (0.00926377); expected 82.0 (0.02)
Passed bias filter:                       34  (0.00828864); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.15s 00:00:00.29 Elapsed: 00:00:00.31
# Mc/sec: 191.60
//
Query:       MMETSP1137-20121227|6931_1  [L=179]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (179 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        66  (0.0160897); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.15s 00:00:00.35 Elapsed: 00:00:00.34
# Mc/sec: 694.88
//
Query:       MMETSP1137-20121227|6932_1  [L=475]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (475 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        63  (0.0153584); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.13s 00:00:00.44 Elapsed: 00:00:00.82
# Mc/sec: 764.57
//
Query:       MMETSP1137-20121227|6933_1  [L=523]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (523 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       147  (0.0358362); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.15s 00:00:00.52 Elapsed: 00:00:00.54
# Mc/sec: 1278.34
//
Query:       MMETSP1137-20121227|6934_1  [L=517]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   2.3e-170  565.1   4.6     3e-170  564.8   3.2    1.1  1  TIGR00390 hslU: ATP-dependent protease HslVU, ATPase subunit
    4.1e-53  178.7   5.5    2.5e-25   87.1   0.0    3.2  3  TIGR00382 clpX: ATP-dependent Clp protease, ATP-binding subunit ClpX
    1.1e-11   41.5   0.2    2.7e-08   30.3   0.0    3.3  3  TIGR02639 ClpA: ATP-dependent Clp protease ATP-binding subunit ClpA
    1.7e-09   35.1   2.4      2e-06   25.0   0.5    3.1  3  TIGR01242 26Sp45: 26S proteasome subunit P45 family
    1.8e-09   34.7   0.2    1.5e-07   28.4   0.1    2.3  2  TIGR01241 FtsH_fam: ATP-dependent metallopeptidase HflB
    4.3e-08   29.8   1.0    1.5e-06   24.7   0.0    2.6  3  TIGR03346 chaperone_ClpB: ATP-dependent chaperone protein ClpB
    7.9e-06   22.3   1.8    0.00046   16.4   0.7    2.6  2  TIGR01243 CDC48: AAA family ATPase, CDC48 subfamily
    9.7e-06   21.9   0.2    0.00027   17.1   0.0    2.7  3  TIGR03345 VI_ClpV1: type VI secretion ATPase, ClpV1 family
      6e-05   21.0   0.6    0.00027   18.8   0.0    2.3  2  TIGR03499 FlhF: flagellar biosynthesis protein FlhF
    7.5e-05   19.6   0.0    0.00066   16.4   0.0    2.3  2  TIGR02928 TIGR02928: orc1/cdc6 family replication initiation protein
    0.00033   17.2   0.1     0.0011   15.5   0.0    1.8  2  TIGR03922 T7SS_EccA: type VII secretion AAA-ATPase EccA
    0.00033   17.6   0.5      0.014   12.2   0.0    2.8  2  TIGR00635 ruvB: Holliday junction DNA helicase RuvB
    0.00039   17.6   0.2     0.0024   15.0   0.0    2.3  2  TIGR02397 dnaX_nterm: DNA polymerase III, subunit gamma and tau
    0.00082   16.8   0.0     0.0019   15.5   0.0    1.6  1  TIGR02640 gas_vesic_GvpN: gas vesicle protein GvpN
    0.00093   15.6   4.1     0.0011   15.3   0.0    2.5  3  TIGR00763 lon: ATP-dependent protease La
     0.0018   15.4   0.2     0.0062   13.7   0.0    2.1  2  TIGR00174 miaA: tRNA dimethylallyltransferase
     0.0087   13.1   0.0      0.015   12.4   0.0    1.3  1  TIGR01526 nadR_NMN_Atrans: nicotinamide-nucleotide adenylyltransferase
  ------ inclusion threshold ------
      0.019   12.8   2.8      0.052   11.3   0.2    2.3  2  TIGR01018 rpsD_arch: ribosomal protein S4
       0.02   12.1   0.2       0.19    8.9   0.0    2.3  2  TIGR03167 tRNA_sel_U_synt: tRNA 2-selenouridine synthase


Domain annotation for each model (and alignments):
>> TIGR00390  hslU: ATP-dependent protease HslVU, ATPase subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  564.8   3.2  1.4e-172    3e-170       2     441 .]      89     517 .]      88     517 .] 0.94

  Alignments for each domain:
  == domain 1    score: 564.8 bits;  conditional E-value: 1.4e-172
   TIGR00390   2 tPreivaeldkyiiGqdeakkavaialrnryrrlqleeelkdevvPknilmiGstGvGkteiarrlaklaeaPfikveatkftevGyvGrdveslvrdlvdaavklvkeekiekvkekaeeaaeerivdkllppaknqfgeeeekdeeesakealrkklreGelddkeieievsekspseieilapp..eleevdenlqsllqnllsdkkkkrklkvkeakkvlieeeaeklvdseeikqeavdrveesGiifideidkiakkg.essgadvsreGvqrdllPiveGstvstkyGsvktdhilfiaaGafqlakPsdliPelqGrlPirvelkaltvddleriltetkaslikqykallkvegvelefsdeaikkiaelaynvnekteniGarrlhtvlerlledlsfeaedlslqkvtidadyvekkleelvkdedlskfil 441
                  Preiv++l++yi+Gq++ak+ava+alrnr+rr +++  l++e+ PknilmiG+tGvGkteiarrlakla+aPfikveatkftevG+vG+dv+ ++rdl+++ +   k +++ek+kek+  ++eer++d+l+ ++ n           ++ +ea+rk lr+G+l+d+ ie+ev ek++ + +   ++   ++e+   + +++   + +k  kr++ +k+a  +l+e+e+ekl+ +e+ik++a+  ve++Gi+fideidki+ +g  + +ad s eGvqrdllP++eGs+vstk+G + t+hilfia+Gaf+ +kPsdl+ elqGrlPirvelk lt++d++ ilte+++ l+kq  al+ +egv++e +d+a ++ia+la ++n++ eniGarrlht++erl e+lsf+a+d  ++++ ida+ v+k+++el+k+ dls+fil
  MMETSP1137-20121227|6934_1  89 KPREIVDQLNRYIVGQADAKRAVAVALRNRWRRQRVPSPLREEISPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGFVGKDVDQIIRDLMEIGMTTAKAKAMEKIKEKVAAKVEERVLDSLVGSN-N----------IAHXREAFRKLLRDGHLNDRLIEVEVPEKKSPGTDTPPGNpfPMNEIVLRFDKMM---TRQKXEKREMPLKDAVPILTEHESEKLISEEDIKRQALWSVEQEGIVFIDEIDKICSRGeYRGSADASSEGVQRDLLPLLEGSQVSTKHGNISTEHILFIASGAFHYCKPSDLLAELQGRLPIRVELKPLTEEDMYTILTEPENNLVKQQCALMFTEGVQMEITDDAKRRIAKLATQINRDVENIGARRLHTIMERLTEELSFDATDRAGERIVIDAEDVQKRVGELAKKSDLSRFIL 517
                 7**********************************************************************************************************************************9543.2..........467899************************9888865433113444444444444...3468899****************************************************556789****************************************************************************************************************************************************************************8 PP

>> TIGR00382  clpX: ATP-dependent Clp protease, ATP-binding subunit ClpX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.1   0.0   1.2e-27   2.5e-25      61     174 ..      82     191 ..      32     218 .. 0.86
   2 !   35.7   0.0   4.7e-12     1e-09     181     257 ..     321     385 ..     303     390 .. 0.85
   3 !   57.0   0.4   1.6e-18   3.5e-16     302     408 ..     392     502 ..     385     507 .. 0.91

  Alignments for each domain:
  == domain 1    score: 87.1 bits;  conditional E-value: 1.2e-27
   TIGR00382  61 leleelpkpkelkevldeyviGqeqakkvlsvavynhykrlrleknkksddgveleksnilliGptGsGktllaqtlakeldvpfaiadattlteaGyvGedvenillkllqaa 174
                 +e+++  kp+e+ ++l+ y++Gq +ak++++va+ n ++r r+   +   +  e++  nil+iGptG Gkt +a+ lak  + pf   +at +te G+vG+dv+ i+  l++  
  MMETSP1137-20121227|6934_1  82 VEEDHGLKPREIVDQLNRYIVGQADAKRAVAVALRNRWRRQRV--PSPLRE--EISPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGFVGKDVDQIIRDLMEIG 191
                 55556669********************************996..455666..8******************************************************999764 PP

  == domain 2    score: 35.7 bits;  conditional E-value: 4.7e-12
   TIGR00382 181 aekGiiyideidkiarksenasitrdvsGeGvqqallklieGtvanvppkGGrkhpeqeliqidtsnilficgGafa 257
                  + Gi++ideidki+ + e +  + d s eGvq+ ll l+eG+ ++       kh      +i t++ilfi +Gaf 
  MMETSP1137-20121227|6934_1 321 EQEGIVFIDEIDKICSRGEYRG-SADASSEGVQRDLLPLLEGSQVS------TKHG-----NISTEHILFIASGAFH 385
                 489**************99987.67*****************9665......4665.....599***********96 PP

  == domain 3    score: 57.0 bits;  conditional E-value: 1.6e-18
   TIGR00382 302 lipefiGrlpvlatlekldeealvailtkpknalvkqyqkllkldevelefeeealkaiakkale.....rktGarglrsiveellldvmfelpsledlekvvitkevvlkq 408
                 l+ e+ Grlp+   l+ l ee++ +ilt+p+n lvkq  +l+  + v++e +++a + iak a +      + Gar l +i+e l  ++ f+  ++   e++vi+ e v+k+
  MMETSP1137-20121227|6934_1 392 LLAELQGRLPIRVELKPLTEEDMYTILTEPENNLVKQQCALMFTEGVQMEITDDAKRRIAKLATQinrdvENIGARRLHTIMERLTEELSFDATDRA-GERIVIDAEDVQKR 502
                 789**********************************************************997633223468********************9998.99******999886 PP

>> TIGR02639  ClpA: ATP-dependent Clp protease ATP-binding subunit ClpA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.3   0.0   1.2e-10   2.7e-08     433     526 ..      75     173 ..      65     182 .. 0.83
   2 ?    1.6   0.0     0.059        13     276     303 ..     321     347 ..     309     365 .. 0.81
   3 !    5.2   0.1     0.005       1.1     638     724 ..     395     485 ..     390     495 .. 0.68

  Alignments for each domain:
  == domain 1    score: 30.3 bits;  conditional E-value: 1.2e-10
   TIGR02639 433 akipeksvssddkekLknlekeLkkkifGqdeaiealvkaik......rsraGlkeenkPvgsflfvGptGvGktelakqLaeelgvellrfDmseymek 526
                  k +++ v+ d+  k +++ ++L++ i Gq +a +a++ a++      r  + l+ee +P  + l++GptGvGkte+a++La+  +  +++ + + ++e 
  MMETSP1137-20121227|6934_1  75 GKTDDAGVEEDHGLKPREIVDQLNRYIVGQADAKRAVAVALRnrwrrqRVPSPLREEISPK-NILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEV 173
                 56777888888888999999******************99963222223457899999996.68999***********************9999998886 PP

  == domain 2    score: 1.6 bits;  conditional E-value: 0.059
   TIGR02639 276 eedailfiDeihtivgagatsggsldas 303
                 e++ i+fiDei  i + g   g+  das
  MMETSP1137-20121227|6934_1 321 EQEGIVFIDEIDKICSRGEYRGS-ADAS 347
                 5678**********998877655.5665 PP

  == domain 3    score: 5.2 bits;  conditional E-value: 0.005
   TIGR02639 638 efrnrldaiikfedlseevlekivkkeleelekk....LaekkveleleddaikylaekgydeefGarelkrvieeeikkkladeiLfGkl 724
                 e + rl   ++ ++l+ee +  i+    ++l k+    +    v++e++dda++ +a+ + + +  + ++     ++i ++l++e+ f  +
  MMETSP1137-20121227|6934_1 395 ELQGRLPIRVELKPLTEEDMYTILTEPENNLVKQqcalMFTEGVQMEITDDAKRRIAKLATQINRDVENIGARRLHTIMERLTEELSFDAT 485
                 77789999999999*9999999987654444333122245789**************9998755444444444444555566666666555 PP

>> TIGR01242  26Sp45: 26S proteasome subunit P45 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.0   0.5   9.4e-09     2e-06     155     215 ..     133     195 ..     127     227 .. 0.79
   2 ?   -0.6   0.0      0.56   1.2e+02     278     296 ..     235     254 ..     231     256 .. 0.85
   3 !    7.6   0.0    0.0019       0.4     217     251 ..     324     360 ..     304     373 .. 0.75

  Alignments for each domain:
  == domain 1    score: 25.0 bits;  conditional E-value: 9.4e-09
   TIGR01242 155 ppkGvllyGppGtGktllakavaeetnatfirvvgselvk.kyiGeGa.rlvrevfklakeka 215
                  pk +l+ Gp G+Gkt +a+ +a+ +na fi+v ++++ +  ++G+   +++r+++++    a
  MMETSP1137-20121227|6934_1 133 SPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEvGFVGKDVdQIIRDLMEIGMTTA 195
                 49************************************9736999865278999998754332 PP

  == domain 2    score: -0.6 bits;  conditional E-value: 0.56
   TIGR01242 278 llrpGrf.drlievplpdle 296
                 llr G + drliev +p+++
  MMETSP1137-20121227|6934_1 235 LLRDGHLnDRLIEVEVPEKK 254
                 789998659********976 PP

  == domain 3    score: 7.6 bits;  conditional E-value: 0.0019
   TIGR01242 217 siifideidaiaakrld..sstsGdrevqrtllqlla 251
                  i+fideid i+++     s+ +    vqr ll ll 
  MMETSP1137-20121227|6934_1 324 GIVFIDEIDKICSRGEYrgSADASSEGVQRDLLPLLE 360
                 79*********99854311233345579999999985 PP

>> TIGR01241  FtsH_fam: ATP-dependent metallopeptidase HflB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.4   0.1     7e-10   1.5e-07      88     145 ..     133     192 ..     129     209 .. 0.88
   2 ?    3.9   0.0     0.019         4     150     179 ..     324     352 ..     314     369 .. 0.72

  Alignments for each domain:
  == domain 1    score: 28.4 bits;  conditional E-value: 7e-10
   TIGR01241  88 iPkGvllvGpPGtGktLlakavaGeagvpffsisGsdfvem.fvGvGasr.vrDlfeqak 145
                 +Pk +l++Gp G+Gkt +a+ +a  a+ pf+++  ++f e+ fvG    + +rDl+e   
  MMETSP1137-20121227|6934_1 133 SPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVgFVGKDVDQiIRDLMEIGM 192
                 69**************************************88***98876379*998544 PP

  == domain 2    score: 3.9 bits;  conditional E-value: 0.019
   TIGR01241 150 ciifiDeiDavGrkrgaglgggndereqtL 179
                 +i+fiDeiD +  +rg+  g++    e   
  MMETSP1137-20121227|6934_1 324 GIVFIDEIDKIC-SRGEYRGSADASSEGVQ 352
                 79********96.46665555555555544 PP

>> TIGR03346  chaperone_ClpB: ATP-dependent chaperone protein ClpB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.7   0.0   6.7e-09   1.5e-06     559     618 ..      93     157 ..      83     177 .. 0.81
   2 ?    2.9   0.0     0.027       5.8     265     291 ..     321     347 ..     309     351 .. 0.86
   3 ?   -3.0   0.1       1.6   3.6e+02     785     815 ..     435     470 ..     399     502 .. 0.50

  Alignments for each domain:
  == domain 1    score: 24.7 bits;  conditional E-value: 6.7e-09
   TIGR03346 559 leeelkervvGqdeaveavadavrr..sraglsdPnrPigs...flflGptGvGktelakalaef 618
                 + ++l++ +vGq +a +ava a+r    r  +  P r   s    l++GptGvGkte+a+ la+ 
  MMETSP1137-20121227|6934_1  93 IVDQLNRYIVGQADAKRAVAVALRNrwRRQRVPSPLREEISpknILMIGPTGVGKTEIARRLAKL 157
                 6699******************9742246667777775543333899***************985 PP

  == domain 2    score: 2.9 bits;  conditional E-value: 0.027
   TIGR03346 265 eGeiilfidelhtlvGaGkaeGaldag 291
                 e e i+fide+  +   G+  G+ da+
  MMETSP1137-20121227|6934_1 321 EQEGIVFIDEIDKICSRGEYRGSADAS 347
                 45569*********************8 PP

  == domain 3    score: -3.0 bits;  conditional E-value: 1.6
   TIGR03346 785 erklelelsdaaldllaeagyd.....PvyGarPlk 815
                 ++ +++e++d+a+  +a+ +          Gar l+
  MMETSP1137-20121227|6934_1 435 TEGVQMEITDDAKRRIAKLATQinrdvENIGARRLH 470
                 445555555555555554433211111123444443 PP

>> TIGR01243  CDC48: AAA family ATPase, CDC48 subfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.7   2.1e-06   0.00046     212     267 ..     134     191 ..     127     256 .. 0.67
   2 ?    3.5   0.0     0.017       3.6     530     568 ..     302     343 ..     298     372 .. 0.56

  Alignments for each domain:
  == domain 1    score: 16.4 bits;  conditional E-value: 2.1e-06
   TIGR01243 212 pkgvllygppgtgktllakavaneagayfiaingpeims.kyyges.eerlreifkea 267
                 pk +l++gp g gkt +a+ +a  a+a fi ++  +     ++g+  ++ +r++++  
  MMETSP1137-20121227|6934_1 134 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEvGFVGKDvDQIIRDLMEIG 191
                 7888888888888888888888888888888877665431345533133334444333 PP

  == domain 2    score: 3.5 bits;  conditional E-value: 0.017
   TIGR01243 530 esekaire..ifrkarqaa..paiifldeidaiapargadlse 568
                 esek i e  i r+a  +     i+f+deid i   rg+  ++
  MMETSP1137-20121227|6934_1 302 ESEKLISEedIKRQALWSVeqEGIVFIDEIDKICS-RGEYRGS 343
                 56666643225556655431146788888888764.4443333 PP

>> TIGR03345  VI_ClpV1: type VI secretion ATPase, ClpV1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.0   1.2e-06   0.00027     558     618 ..      91     156 ..      82     172 .. 0.80
   2 ?    0.7   0.0      0.12        26     280     305 ..     322     347 ..     314     348 .. 0.88
   3 ?   -0.8   0.1      0.34        73     763     831 ..     405     480 ..     393     496 .. 0.64

  Alignments for each domain:
  == domain 1    score: 17.1 bits;  conditional E-value: 1.2e-06
   TIGR03345 558 leleekleervvGqdealeaiaerirta..r....AgledpkkPlgvFllvGpsGvGktetalalAe 618
                 +e+ ++l++ +vGq +a +a+a ++r    r      l+++  P+ + l++Gp GvGkte a  lA 
  MMETSP1137-20121227|6934_1  91 REIVDQLNRYIVGQADAKRAVAVALRNRwrRqrvpSPLREEISPKNI-LMIGPTGVGKTEIARRLAK 156
                 577899**********9999888776531121122568888899987.779***********99996 PP

  == domain 2    score: 0.7 bits;  conditional E-value: 0.12
   TIGR03345 280 kpiilFiDeaHtliGaGgqaGqgDaa 305
                 +  i+FiDe+  +   G   G+ Da+
  MMETSP1137-20121227|6934_1 322 QEGIVFIDEIDKICSRGEYRGSADAS 347
                 55699*******************96 PP

  == domain 3    score: -0.8 bits;  conditional E-value: 0.34
   TIGR03345 763 pylplsdevlaeive...lkleriakrlkenykaeleydealveeivarcte.....vesGaRaidaileqtllpel 831
                    pl++e + +i +    +l + +  l  + ++++e+++++ ++i++ +t+      + GaR +++i+e+ l+ el
  MMETSP1137-20121227|6934_1 405 ELKPLTEEDMYTILTepeNNLVKQQCALMFTEGVQMEITDDAKRRIAKLATQinrdvENIGARRLHTIMER-LTEEL 480
                 55667777776666411134555555677778899999999999999988872222234688888887764.55555 PP

>> TIGR03499  FlhF: flagellar biosynthesis protein FlhF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.0   1.3e-06   0.00027     158     225 ..      91     164 ..      37     183 .. 0.77
   2 ?   -2.2   0.1       3.2     7e+02     111     131 ..     444     464 ..     406     488 .. 0.47

  Alignments for each domain:
  == domain 1    score: 18.8 bits;  conditional E-value: 1.3e-06
   TIGR03499 158 relleklke.kedaeeareklreaLekklsvkkeedeilek..ggviaLvGptGvGKTT...TlAKLAarfvle 225
                 re++++l++    + +a++++  aL+++ + +   +++ e+  ++ i+++GptGvGKT     lAKLA   +++
  MMETSP1137-20121227|6934_1  91 REIVDQLNRyIVGQADAKRAVAVALRNRWRRQRVPSPLREEisPKNILMIGPTGVGKTEiarRLAKLANAPFIK 164
                 5666666666666777788888888888877777666666433678************5222578888665555 PP

  == domain 2    score: -2.2 bits;  conditional E-value: 3.2
   TIGR03499 111 eelrkelkalkellekqlsel 131
                 ++ ++ +++l  ++++ ++++
  MMETSP1137-20121227|6934_1 444 DDAKRRIAKLATQINRDVENI 464
                 223333333333333333332 PP

>> TIGR02928  TIGR02928: orc1/cdc6 family replication initiation protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0   3.1e-06   0.00066      34      65 ..     128     159 ..     122     173 .. 0.85
   2 ?   -0.4   0.0      0.41        88     128     143 ..     321     337 ..     310     341 .. 0.77

  Alignments for each domain:
  == domain 1    score: 16.4 bits;  conditional E-value: 3.1e-06
   TIGR02928  34 ilrgsrpsnvliyGktGtGKtavtkkvlkele 65 
                 + ++ +p+n+l+ G+tG+GKt +++ + k ++
  MMETSP1137-20121227|6934_1 128 LREEISPKNILMIGPTGVGKTEIARRLAKLAN 159
                 556779******************99987665 PP

  == domain 2    score: -0.4 bits;  conditional E-value: 0.41
   TIGR02928 128 edsliivLDEiDklv.k 143
                 e+  i+ +DEiDk++ +
  MMETSP1137-20121227|6934_1 321 EQEGIVFIDEIDKICsR 337
                 5667999*******833 PP

>> TIGR03922  T7SS_EccA: type VII secretion AAA-ATPase EccA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0     5e-06    0.0011     271     335 ..      93     157 ..      52     172 .. 0.82
   2 ?   -1.9   0.0      0.93     2e+02     360     391 ..     307     338 ..     303     360 .. 0.74

  Alignments for each domain:
  == domain 1    score: 15.5 bits;  conditional E-value: 5e-06
   TIGR03922 271 aeaeLakq.iGlervkeqvaalkssvevalvRaerGlavaqrskHlllaGPPGtGkttiArvvaki 335
                    +L++  +G +++k++va      + ++ R    l  +   k +l++GP G Gkt iAr +ak+
  MMETSP1137-20121227|6934_1  93 IVDQLNRYiVGQADAKRAVAVA-LRNRWRRQRVPSPLREEISPKNILMIGPTGVGKTEIARRLAKL 157
                 5567777526999999999753.344678889999999999***********************96 PP

  == domain 2    score: -1.9 bits;  conditional E-value: 0.93
   TIGR03922 360 igeseaktnelidkaLggvlFlDEayaLvekr 391
                 i+e + k ++l     +g++F+DE+  + +++
  MMETSP1137-20121227|6934_1 307 ISEEDIKRQALWSVEQEGIVFIDEIDKICSRG 338
                 55666677777777779*******99888873 PP

>> TIGR00635  ruvB: Holliday junction DNA helicase RuvB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.2   0.0   6.7e-05     0.014      29      58 ..     133     162 ..      95     230 .. 0.66
   2 ?    2.9   0.1     0.045       9.8      74      94 ..     315     335 ..     300     489 .. 0.77

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 6.7e-05
   TIGR00635  29 aldhvllyGPPGlGkttlakiiakelgvkl 58 
                 +   +l++GP G+Gkt +a+ +ak  ++  
  MMETSP1137-20121227|6934_1 133 SPKNILMIGPTGVGKTEIARRLAKLANAPF 162
                 45789***************9998766654 PP

  == domain 2    score: 2.9 bits;  conditional E-value: 0.045
   TIGR00635  74 ailtaleegdvlfiDeihrls 94 
                 ++l ++e++ ++fiDei ++ 
  MMETSP1137-20121227|6934_1 315 QALWSVEQEGIVFIDEIDKIC 335
                 46788999999*****99875 PP

>> TIGR02397  dnaX_nterm: DNA polymerase III, subunit gamma and tau
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   1.1e-05    0.0024      38     108 ..     136     206 ..     108     216 .. 0.75
   2 ?   -0.5   0.0      0.56   1.2e+02     208     238 ..     348     379 ..     343     488 .. 0.62

  Alignments for each domain:
  == domain 1    score: 15.0 bits;  conditional E-value: 1.1e-05
   TIGR02397  38 ayLfsGprGvGKTsiArilAkalNCen.kedgepcneCesCkeinegksldviEiDaAsnngvddirellen 108
                   L+ Gp GvGKT iAr lAk  N    k ++++  e     +   +   d++Ei   +  +   + +++e+
  MMETSP1137-20121227|6934_1 136 NILMIGPTGVGKTEIARRLAKLANAPFiKVEATKFTEVGFVGKDVDQIIRDLMEIGM-TTAKAKAMEKIKEK 206
                 57999*******************987555666666666666666777788888854.33444555555555 PP

  == domain 2    score: -0.5 bits;  conditional E-value: 0.56
   TIGR02397 208 aeGslRDalslldql.islskgkitlekveel 238
                 +eG  RD l ll+   +s+++g+i++e++  +
  MMETSP1137-20121227|6934_1 348 SEGVQRDLLPLLEGSqVSTKHGNISTEHILFI 379
                 77888888888886513445558888877543 PP

>> TIGR02640  gas_vesic_GvpN: gas vesicle protein GvpN
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0     9e-06    0.0019      23      69 ..     136     181 ..     128     213 .. 0.82

  Alignments for each domain:
  == domain 1    score: 15.5 bits;  conditional E-value: 9e-06
   TIGR02640  23 pvhlrGPaGtGktslalhvakkrdrPvvllnGdaelktsdlvGeeag 69 
                  + ++GP+G Gkt +a+ +ak  + P + ++   ++++  +vG+  +
  MMETSP1137-20121227|6934_1 136 NILMIGPTGVGKTEIARRLAKLANAPFIKVEA-TKFTEVGFVGKDVD 181
                 5789**********************999875.46777777776655 PP

>> TIGR00763  lon: ATP-dependent protease La
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0     5e-06    0.0011     347     384 ..     128     165 ..     124     174 .. 0.89
   2 ?   -2.9   0.2       1.7   3.6e+02     203     224 ..     194     215 ..     179     220 .. 0.56
   3 ?    1.2   0.0     0.095        21     421     435 ..     323     339 ..     315     506 .. 0.83

  Alignments for each domain:
  == domain 1    score: 15.3 bits;  conditional E-value: 5e-06
   TIGR00763 347 lrkklkgkilclvGPPGVGKtSlaksiAkalnrkfvrl 384
                 lr++++ k + ++GP GVGKt +a+ +Ak  n  f+++
  MMETSP1137-20121227|6934_1 128 LREEISPKNILMIGPTGVGKTEIARRLAKLANAPFIKV 165
                 57778888899*************************97 PP

  == domain 2    score: -2.9 bits;  conditional E-value: 1.7
   TIGR00763 203 lkkelelaklqekiakkveekl 224
                   k  +++k++ek+a kvee++
  MMETSP1137-20121227|6934_1 194 TAKAKAMEKIKEKVAAKVEERV 215
                 3344455566666666666554 PP

  == domain 3    score: 1.2 bits;  conditional E-value: 0.095
   TIGR00763 421 nPlillDEiDKlg..ss 435
                 + ++++DEiDK+    +
  MMETSP1137-20121227|6934_1 323 EGIVFIDEIDKICsrGE 339
                 46889999999984423 PP

>> TIGR00174  miaA: tRNA dimethylallyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   0.0   2.9e-05    0.0062       2      33 ..     137     168 ..     136     214 .. 0.90
   2 ?   -2.3   0.0       2.1   4.6e+02     267     285 ..     312     330 ..     274     333 .. 0.72

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 2.9e-05
   TIGR00174   2 ivlvGptavGKsqlaiqlakklnaeiisvDsl 33 
                 i+++Gpt+vGK+++a  lak  na  i v++ 
  MMETSP1137-20121227|6934_1 137 ILMIGPTGVGKTEIARRLAKLANAPFIKVEAT 168
                 899*********************99998765 PP

  == domain 2    score: -2.3 bits;  conditional E-value: 2.1
   TIGR00174 267 AKRQltwlrkksavlwlds 285
                  KRQ  w  +++ + ++d 
  MMETSP1137-20121227|6934_1 312 IKRQALWSVEQEGIVFIDE 330
                 4888888888888888776 PP

>> TIGR01526  nadR_NMN_Atrans: nicotinamide-nucleotide adenylyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.4   0.0   6.8e-05     0.015     163     222 ..     135     195 ..     111     216 .. 0.78

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 6.8e-05
   TIGR01526 163 ktvailGgestGkstLvrklaeklnttsaeeyareyeeaklggde.alkysdyakivlGqa 222
                 k + ++G+   Gk+ ++r+la+  n+++ +  a ++ e   +g + + ++ d  +i +  a
  MMETSP1137-20121227|6934_1 135 KNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGFVGKDvDQIIRDLMEIGMTTA 195
                 78899*************************9999999887666665777777776644444 PP

>> TIGR01018  rpsD_arch: ribosomal protein S4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.2   0.00024     0.052      68     141 ..     178     251 ..     164     253 .. 0.90
   2 ?    0.9   0.1      0.38        82      72     111 ..     432     474 ..     412     481 .. 0.68

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 0.00024
   TIGR01018  68 keaeallkrlvrlGildeenaklddvlslkvedvlerrlqtlvykkGlaktikqarqlivhghiavdgrvvtsP 141
                 k+ +++++ l+ +G+   +   ++++ +  + +v er l  lv  + +a+  +  r+l+ +gh++ +   v++P
  MMETSP1137-20121227|6934_1 178 KDVDQIIRDLMEIGMTTAKAKAMEKIKEKVAAKVEERVLDSLVGSNNIAHXREAFRKLLRDGHLNDRLIEVEVP 251
                 56789************9999******************************************97665555555 PP

  == domain 2    score: 0.9 bits;  conditional E-value: 0.38
   TIGR01018  72 allkrlvrlGildeen...aklddvlslkvedvlerrlqtlvy 111
                  ++++ v++ i d+ +   akl   ++  ve++  rrl t++ 
  MMETSP1137-20121227|6934_1 432 LMFTEGVQMEITDDAKrriAKLATQINRDVENIGARRLHTIME 474
                 45566667777766552224566668889***********975 PP

>> TIGR03167  tRNA_sel_U_synt: tRNA 2-selenouridine synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   0.0    0.0009      0.19     115     150 ..     123     157 ..     118     174 .. 0.74
   2 ?    0.0   0.1      0.45        97     221     276 ..     434     491 ..     422     509 .. 0.72

  Alignments for each domain:
  == domain 1    score: 8.9 bits;  conditional E-value: 0.0009
   TIGR03167 115 lvldeleelaqelklvvlgGnTGsgKtelLeklaea 150
                  v + l+e + + k +++ G TG+gKte+ ++la+ 
  MMETSP1137-20121227|6934_1 123 RVPSPLRE-EISPKNILMIGPTGVGKTEIARRLAKL 157
                 55555555.3344789999**********9998875 PP

  == domain 2    score: 0.0 bits;  conditional E-value: 0.45
   TIGR03167 221 mkkaplvvveasleeRverlleeY..ealeedaekleealekirkrlgkerveklkel 276
                 ++++ +++++++ + R+++l+++   +  +  a++l++ +e+++++l+ ++++++ e 
  MMETSP1137-20121227|6934_1 434 FTEGVQMEITDDAKRRIAKLATQInrDVENIGARRLHTIMERLTEELSFDATDRAGER 491
                 5677889999999999999999883233444566999999999999998888887665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (517 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       373  (0.0909313); expected 82.0 (0.02)
Passed bias filter:                      222  (0.0541199); expected 82.0 (0.02)
Passed Vit filter:                        53  (0.0129205); expected 4.1 (0.001)
Passed Fwd filter:                        19  (0.00463189); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              19  [number of targets reported over threshold]
# CPU time: 0.73u 0.18s 00:00:00.90 Elapsed: 00:00:00.72
# Mc/sec: 947.76
//
Query:       MMETSP1137-20121227|6935_1  [L=48]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (48 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        81  (0.0197465); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.18s 00:00:00.31 Elapsed: 00:00:00.26
# Mc/sec: 243.67
//
Query:       MMETSP1137-20121227|6936_1  [L=124]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (124 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        89  (0.0216967); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.11s 00:00:00.27 Elapsed: 00:00:00.28
# Mc/sec: 584.52
//
Query:       MMETSP1137-20121227|6937_1  [L=415]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (415 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       139  (0.0338859); expected 82.0 (0.02)
Passed bias filter:                      110  (0.0268162); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.17s 00:00:00.47 Elapsed: 00:00:00.56
# Mc/sec: 978.13
//
Query:       MMETSP1137-20121227|6938_1  [L=297]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (297 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        81  (0.0197465); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.14s 00:00:00.40 Elapsed: 00:00:00.32
# Mc/sec: 1225.02
//
Query:       MMETSP1137-20121227|6939_1  [L=70]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        50  (0.0121892); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.15s 00:00:00.28 Elapsed: 00:00:00.30
# Mc/sec: 307.97
//
Query:       MMETSP1137-20121227|6940_1  [L=1387]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1387 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        60  (0.014627); expected 82.0 (0.02)
Passed bias filter:                       32  (0.00780107); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.75u 0.15s 00:00:00.90 Elapsed: 00:00:00.61
# Mc/sec: 3001.13
//
Query:       MMETSP1137-20121227|6941_1  [L=122]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (122 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        32  (0.00780107); expected 82.0 (0.02)
Passed bias filter:                       26  (0.00633837); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.13s 00:00:00.26 Elapsed: 00:00:00.32
# Mc/sec: 503.21
//
Query:       MMETSP1137-20121227|6942_1  [L=97]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (97 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        56  (0.0136519); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.15s 00:00:00.29 Elapsed: 00:00:00.41
# Mc/sec: 312.27
//
Query:       MMETSP1137-20121227|6943_1  [L=249]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.9e-36  123.7   0.1    2.6e-36  123.3   0.0    1.0  1  TIGR01327 PGDH: phosphoglycerate dehydrogenase
    0.00034   17.5   2.4      0.001   15.9   1.6    1.8  1  TIGR00518 alaDH: alanine dehydrogenase
  ------ inclusion threshold ------
      0.012   12.9   1.8      0.019   12.2   1.2    1.3  1  TIGR01097 PhnE: phosphonate ABC transporter, permease protein PhnE
      0.027   11.5   0.4      0.043   10.9   0.0    1.5  2  TIGR02853 spore_dpaA: dipicolinic acid synthetase, A subunit


Domain annotation for each model (and alignments):
>> TIGR01327  PGDH: phosphoglycerate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  123.3   0.0   2.6e-39   2.6e-36      79     312 ..       3     237 ..       2     245 .. 0.90

  Alignments for each domain:
  == domain 1    score: 123.3 bits;  conditional E-value: 2.6e-39
   TIGR01327  79 eaatkkGilvvNaPegntisaaElalalllalaRkipqadksvkekkWerkkflGtElygktlGviGlGriGsevakrakalgmkvlayDPyise.ekaeklgvellkdldellaeaDvitvHvPltketkgligkeelakmKkgviivNcaRGGiidEkALveale..egkvraaalDvfekEPpt.dnklleldnvvvtpHlgAsteEaqenvavevaeevlealkgevvesavNl 312
                  aa + Gi +   P       a + +a++l+ +R + +  ++  +k+W     +  + +g  +Gv+G+G iG+eva+ a algm+ +++     +   +e++     + ld ll e+D++ v vP t++t++li+ e+la mK+++ i+N+aRG +idE AL++al+  ++  ++a lDv + EP   d++l +++nvv+tpH +  t+ a ++ ++  +++++++ +ge+ ++ v +
  MMETSP1137-20121227|6943_1   3 RAAHAAGIKMTYCPGVYATPIAQYVIAHVLSCTRMLREHAEQQASKTWAP--LMQRDPRGAVVGVVGAGGIGNEVARMATALGMRSIGWRRRAGSfGSFEDIFTG-EEGLDALLMESDFVVVAVPNTPQTRNLINTEKLALMKPSAWIINVARGAVIDEIALTTALQieSAPPAGAVLDVAAVEPLAhDSPLWSMQNVVITPHDSWMTQRAAKDNTAYFVDNLRRLQRGEALREPVPA 237
                 67888999999999999999*******************9********97..999**********************************8766442677888766.788*******************************************************9861155568899********8879********************99999999999999999999988877655 PP

>> TIGR00518  alaDH: alanine dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   1.6   9.7e-07     0.001     168     282 ..      61     164 ..      57     197 .. 0.81

  Alignments for each domain:
  == domain 1    score: 15.9 bits;  conditional E-value: 9.7e-07
   TIGR00518 168 gkvtiiGgGvvGtnaaklavGlGatvtildinvdrlrqldelfgsriktrysnaveiedavkeadlligavlipGakapklvseelvkqmkpGavivdvaidqGGivetvrvtty 282
                 + v ++G+G +G + a++a+ lG             r+    fgs  +  ++    ++ ++ e+d+++ av  +  ++ +l+  e+++ mkp a i++va  +G +++ + +tt 
  MMETSP1137-20121227|6943_1  61 AVVGVVGAGGIGNEVARMATALGMRSIGW-------RRRAGSFGSF-EDIFTGEEGLDALLMESDFVVVAVPNT-PQTRNLINTEKLALMKPSAWIINVA--RGAVIDEIALTTA 164
                 45789******************876444.......4444556653.34455678899***********99765.467899****************998..6888888887765 PP

>> TIGR01097  PhnE: phosphonate ABC transporter, permease protein PhnE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   1.2   1.9e-05     0.019     200     218 ..      61      79 ..      58      89 .. 0.81

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 1.9e-05
   TIGR01097 200 tvlGlvGAGGIGleLaeai 218
                 +v+G+vGAGGIG e+a   
  MMETSP1137-20121227|6943_1  61 AVVGVVGAGGIGNEVARMA 79 
                 89**********9987655 PP

>> TIGR02853  spore_dpaA: dipicolinic acid synthetase, A subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.0      0.95   9.7e+02     255     282 ..       9      33 ..       3      34 .. 0.69
   2 ?   10.9   0.0   4.2e-05     0.043     152     240 ..      61     151 ..      57     169 .. 0.80

  Alignments for each domain:
  == domain 1    score: -3.4 bits;  conditional E-value: 0.95
   TIGR02853 255 GikalLapgLPGivaPktaGkilanvls 282
                 Gik       PG+ a   a  ++a+vls
  MMETSP1137-20121227|6943_1   9 GIKMTY---CPGVYATPIAQYVIAHVLS 33 
                 555443...4788888899999999886 PP

  == domain 2    score: 10.9 bits;  conditional E-value: 4.2e-05
   TIGR02853 152 srvlvlGlGrtGktiarllsalgakvsvaareskdlarilelglepvelkeleekvaeiDivintiPal.....vltkdvlsklpkhaviiDla 240
                 + v v+G G +G+ +ar+ +alg + s++ r+ +     +e  ++    + l+  + e D v+ ++P+      +++++ l+ ++ +a ii++a
  MMETSP1137-20121227|6943_1  61 AVVGVVGAGGIGNEVARMATALGMR-SIGWRRRAGSFGSFEDIFTG--EEGLDALLMESDFVVVAVPNTpqtrnLINTEKLALMKPSAWIINVA 151
                 56789******************98.78888888888888888775..46799999********999871112244445556688889999887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (249 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       223  (0.0543637); expected 82.0 (0.02)
Passed bias filter:                      205  (0.0499756); expected 82.0 (0.02)
Passed Vit filter:                        34  (0.00828864); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.29u 0.18s 00:00:00.47 Elapsed: 00:00:00.54
# Mc/sec: 608.62
//
Query:       MMETSP1137-20121227|6944_1  [L=299]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (299 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        65  (0.0158459); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.14s 00:00:00.37 Elapsed: 00:00:00.40
# Mc/sec: 986.62
//
Query:       MMETSP1137-20121227|6945_1  [L=550]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (550 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        82  (0.0199902); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.14s 00:00:00.49 Elapsed: 00:00:00.47
# Mc/sec: 1544.55
//
Query:       MMETSP1137-20121227|6946_1  [L=710]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.9e-17   60.3   0.2    8.9e-17   58.0   0.0    1.8  2  TIGR03903 TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
    8.4e-10   36.3   0.1    6.5e-08   30.1   0.0    2.3  2  TIGR03896 cyc_nuc_ocin: bacteriocin-type transport-associated protein
    2.3e-05   21.8   0.3    5.7e-05   20.5   0.0    1.7  2  TIGR03724 arch_bud32: Kae1-associated kinase Bud32


Domain annotation for each model (and alignments):
>> TIGR03903  TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.2     0.029        40     353     383 ..     343     373 ..     340     376 .. 0.89
   2 !   58.0   0.0   6.5e-20   8.9e-17       2     231 ..     425     638 ..     424     648 .. 0.88

  Alignments for each domain:
  == domain 1    score: -0.4 bits;  conditional E-value: 0.029
   TIGR03903 353 aierdarraaRaalelvrsagrkaeeaagee 383
                 a+ r+ar+aaRaa+  ++ ++ + +ea+ge+
  MMETSP1137-20121227|6946_1 343 AAARPARLAARAAKYTASGVEVTHDEAGGEG 373
                 5679****************99999999986 PP

  == domain 2    score: 58.0 bits;  conditional E-value: 6.5e-20
   TIGR03903   2 tghkvaikllRedaaeeerlvaRFrReialCarLshPnivaLlDsGeaedgllFavFeyveGrtlrevLaadGaLpaaetgrLmlqvLDalaaahdaGvvhRDLkPqnimvsaadveshakvLDFGigaLlpgvedadeatltrttevlGsPaYaaPeqLRgepvtaksDlYaWGLivleCLtGkrvvqGasvaevlykqLsPvdvslPsaiaghpLgevLRkalnkdvr 231
                 tg+  a+k + +     + +v     e+++  r+ hP i + +   +++   l  + e+ +G  + + L  + a +  +    ++qvL  l   h+  +vhRDLk +n+++++ +     k+ DFG + L             r+  + G+P+Y aPe + +     + D++a G+++ e L G+   + + + + ++k L    v  P+ i+     +++ k l+kd+ 
  MMETSP1137-20121227|6946_1 425 TGQIYALKQMVKADIVSMGQVEHIMQETQILSRVIHPFITNKFGAIVTQT-NLILIMEFCPGGDMFDQLYKHKAFSLSDARIFIMQVLLPLEYLHSMSIVHRDLKLENLLLAQDGA---LKLTDFGFAKLIKY----------RSWTLCGTPEYLAPEIILEKGHGKAVDYWALGVLFYEMLNGHSPFEAEETLQTYQKILD-GTVNYPPNIDPDA-KDLIGKLLQKDIS 638
                 88888999888888999***************************999999.566799*******************************************************9886...6899****999743..........334578**********************************************9888886.5699999997543.4555555566555 PP

>> TIGR03896  cyc_nuc_ocin: bacteriocin-type transport-associated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.1   0.0   4.8e-11   6.5e-08     135     246 ..     132     244 ..     117     274 .. 0.84
   2 !    3.6   0.0    0.0057       7.7      14      40 ..     288     314 ..     275     326 .. 0.68

  Alignments for each domain:
  == domain 1    score: 30.1 bits;  conditional E-value: 4.8e-11
   TIGR03896 135 dsepLrkvLlilgeleekDvaWlaksGkkkklsagtvlikegeavdaLYilLaGeaelsisedg..asrevgssrrGeilGelsflnsdlaatatvkavealvlLaidkeelaa 246
                  + +  k  +i++ l+e+ +  l+++  +++++ag  +i  ge+ + +Y++  Ge +  +++ +  as++v s   G+ +Gel+++      tat+ a++++vl  +d+ +++ 
  MMETSP1137-20121227|6946_1 132 RIMHAIKQNVIFSRLNENQLKLLQQAMMEHHVPAGANVISQGEKGNHFYVVDSGELDAYVKTADskASTQVKSFGAGDSFGELALMYNCPR-TATIMARTDVVLWSLDRVSFRS 244
                 5556666779********************************************988766554433899***************9987666.*****************99875 PP

  == domain 2    score: 3.6 bits;  conditional E-value: 0.0057
   TIGR03896  14 aaettLieeGkaaddLfilldGaitvt 40 
                 + + ++i+eG+a  +++i+ +G + +t
  MMETSP1137-20121227|6946_1 288 KVDEKIIQEGEAGTHFYIIVEGEVVIT 314
                 455677777777777777777776554 PP

>> TIGR03724  arch_bud32: Kae1-associated kinase Bud32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0      0.66     9e+02     102     134 ..     150     185 ..     126     198 .. 0.61
   2 !   20.5   0.0   4.2e-08   5.7e-05      45     138 ..     449     550 ..     437     556 .. 0.82

  Alignments for each domain:
  == domain 1    score: -3.0 bits;  conditional E-value: 0.66
   TIGR03724 102 lvgklHkagivhgDlttsNiivk...ddklyliDfG 134
                 ++  l +a + h  ++ +N+i +   +++ y++D G
  MMETSP1137-20121227|6946_1 150 QLKLLQQAMMEHHVPAGANVISQgekGNHFYVVDSG 185
                 344455566667777777777753335566777766 PP

  == domain 2    score: 20.5 bits;  conditional E-value: 4.2e-08
   TIGR03724  45 rkEarllseakkagvntPvvydvdpeekkivmeyiegkklkdlleekel.......ellkevGelvgklHkagivhgDlttsNiiv.kddklyliDfGLgkk 138
                  +E ++ls++ +  ++      v++ + +++me   g ++ d l +++         ++ +v   +  lH+  ivh Dl  +N+++ +d+ l l DfG +k 
  MMETSP1137-20121227|6946_1 449 MQETQILSRVIHPFITNKFGAIVTQTNLILIMEFCPGGDMFDQLYKHKAfslsdarIFIMQVLLPLEYLHSMSIVHRDLKLENLLLaQDGALKLTDFGFAKL 550
                 5666677766666666666677899999999***999999998888777788887667788889999******************95678899*****9985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (710 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       127  (0.0309605); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.50u 0.17s 00:00:00.67 Elapsed: 00:00:00.57
# Mc/sec: 1615.73
//
Query:       MMETSP1137-20121227|6947_1  [L=1912]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   8.1e-128  425.4  19.4    4.1e-63  210.8   1.7    4.0  3  TIGR01257 rim_protein: rim ABC transporter
     3e-123  408.8   0.0    2.1e-62  208.9   0.0    2.2  2  TIGR01188 drrA: daunorubicin resistance ABC transporter, ATP-binding protein
    1.4e-85  284.4   2.7    1.5e-47  159.9   0.1    2.3  2  TIGR03864 PQQ_ABC_ATP: ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system
    3.6e-80  267.0   1.0    4.8e-42  141.8   0.0    2.3  2  TIGR01288 nodI: nodulation ABC transporter NodI
    8.8e-77  256.3   0.0    3.1e-39  133.0   0.0    2.1  2  TIGR03522 GldA_ABC_ATP: gliding motility-associated ABC transporter ATP-binding subunit GldA
      1e-58  196.5   0.0    9.5e-32  108.2   0.0    2.3  2  TIGR00968 3a0106s01: sulfate ABC transporter, ATP-binding protein
      8e-57  190.5   0.0    5.8e-30  102.5   0.0    2.3  2  TIGR03411 urea_trans_UrtD: urea ABC transporter, ATP-binding protein UrtD
    1.2e-53  180.5   0.0    1.5e-29  101.2   0.0    2.3  2  TIGR03265 PhnT2: putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein
    7.2e-52  174.0   0.0    1.2e-29  101.4   0.0    2.3  2  TIGR02673 FtsE: cell division ATP-binding protein FtsE
    2.1e-51  172.6   0.0    1.4e-26   91.4   0.0    2.2  2  TIGR03740 galliderm_ABC: lantibiotic protection ABC transporter, ATP-binding subunit
    6.2e-51  171.4   0.0    1.1e-26   91.7   0.0    2.2  2  TIGR01186 proV: glycine betaine/L-proline transport ATP binding subunit
    1.2e-49  166.7   0.0    7.2e-28   95.5   0.0    2.4  2  TIGR02982 heterocyst_DevA: ABC exporter ATP-binding subunit, DevA family
    2.5e-49  165.6   0.0    4.8e-26   89.5   0.0    2.7  3  TIGR03410 urea_trans_UrtE: urea ABC transporter, ATP-binding protein UrtE
    3.5e-49  166.0   1.8    4.8e-28   96.2   0.1    3.4  3  TIGR02857 CydD: thiol reductant ABC exporter, CydD subunit
    7.7e-49  164.4   5.8    4.1e-27   92.6   0.0    3.3  4  TIGR03375 type_I_sec_LssB: type I secretion system ATPase
    2.4e-48  162.8   2.7    4.6e-24   82.9   0.1    2.3  2  TIGR03258 PhnT: 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT
    2.7e-48  162.3   9.9    1.1e-26   91.5   0.5    3.2  2  TIGR03873 F420-0_ABC_ATP: proposed F420-0 ABC transporter, ATP-binding protein
    3.2e-47  158.9   0.0    2.5e-26   90.6   0.0    2.3  2  TIGR00960 3a0501s02: type II secretory pathway family protein
    2.6e-46  156.0   0.0    4.6e-27   92.7   0.0    2.2  2  TIGR02314 ABC_MetN: D-methionine ABC transporter, ATP-binding protein
    3.9e-46  155.1   0.0      2e-26   90.7   0.0    2.4  2  TIGR02211 LolD_lipo_ex: lipoprotein releasing system, ATP-binding protein
      8e-46  153.9   0.0    2.4e-25   87.0   0.0    2.2  2  TIGR03608 L_ocin_972_ABC: putative bacteriocin export ABC transporter, lactococcin 972 group
    2.2e-45  153.1  10.4      2e-24   83.9   2.2    4.1  3  TIGR02868 CydC: thiol reductant ABC exporter, CydC subunit
    3.4e-45  151.7   0.4    4.6e-23   79.5   0.0    2.7  2  TIGR01166 cbiO: cobalt ABC transporter, ATP-binding protein
    5.7e-45  151.4   0.1    3.1e-25   86.9   0.0    2.3  2  TIGR01277 thiQ: thiamine ABC transporter, ATP-binding protein
    6.2e-45  151.3   0.0      3e-28   96.7   0.0    3.6  3  TIGR02315 ABC_phnC: phosphonate ABC transporter, ATP-binding protein
    1.5e-43  146.6   3.8    4.2e-22   76.6   0.1    2.7  2  TIGR01189 ccmA: heme ABC exporter, ATP-binding protein CcmA
    4.4e-43  145.6   0.0    5.7e-22   75.9   0.0    3.6  3  TIGR00955 3a01204: pigment precursor permease
    3.6e-41  139.1   1.8      4e-22   76.8   0.1    2.6  2  TIGR03771 anch_rpt_ABC: anchored repeat-type ABC transporter, ATP-binding subunit
    1.2e-40  137.7   3.0    3.5e-25   86.8   0.0    3.1  3  TIGR02142 modC_ABC: molybdate ABC transporter, ATP-binding protein
    1.3e-40  137.3   0.0    1.4e-20   71.7   0.0    2.3  2  TIGR01184 ntrCD: nitrate ABC transporter, ATP-binding proteins C and D
    2.4e-40  136.4   0.0    1.2e-19   68.4   0.0    2.2  2  TIGR01187 potA: polyamine ABC transporter, ATP-binding protein
    5.2e-39  132.0   0.0    1.2e-22   77.9   0.0    2.8  2  TIGR03269 met_CoM_red_A2: methyl coenzyme M reductase system, component A2
    1.2e-37  127.4   0.0    2.2e-20   70.9   0.0    2.7  2  TIGR00972 3a0107s01c2: phosphate ABC transporter, ATP-binding protein
    1.2e-36  124.3   0.9    1.1e-21   74.9   0.0    3.1  2  TIGR02204 MsbA_rel: ABC transporter, permease/ATP-binding protein
    8.6e-36  121.4   0.0    9.4e-19   65.1   0.0    2.8  2  TIGR01842 type_I_sec_PrtD: type I secretion system ATPase
    2.9e-35  119.6   0.3      5e-21   72.6   0.0    2.9  2  TIGR02203 MsbA_lipidA: lipid A export permease/ATP-binding protein MsbA
    7.8e-32  108.6   0.7    2.9e-17   60.8   0.0    4.1  2  TIGR02769 nickel_nikE: nickel import ATP-binding protein NikE
    3.9e-31  106.1   0.0    1.9e-14   51.0   0.0    3.2  3  TIGR03719 ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family
      9e-31  104.9   0.0    4.6e-18   63.3   0.0    3.7  2  TIGR02324 CP_lyasePhnL: phosphonate C-P lyase system protein PhnL
      1e-29  101.2   0.3    7.2e-18   62.0   0.0    3.0  2  TIGR01846 type_I_sec_HlyB: type I secretion system ATPase
    1.7e-29  100.8   0.0    1.7e-15   54.9   0.0    3.0  2  TIGR01978 sufC: FeS assembly ATPase SufC
    5.6e-29   98.7   0.3    2.8e-15   53.4   0.0    4.0  2  TIGR00958 3a01208: antigen peptide transporter 2
    4.7e-28   95.9   0.1    2.2e-16   57.7   0.0    4.1  2  TIGR03005 ectoine_ehuA: ectoine/hydroxyectoine ABC transporter, ATP-binding protein EhuA
    5.8e-28   95.7   0.0    1.6e-13   48.2   0.0    2.7  2  TIGR03415 ABC_choXWV_ATP: choline ABC transporter, ATP-binding protein
    7.8e-28   95.2   1.0    1.2e-16   58.2   0.0    3.0  2  TIGR03797 NHLM_micro_ABC2: NHLM bacteriocin system ABC transporter, ATP-binding protein
    2.1e-27   93.9   0.0    1.6e-12   45.2   0.0    3.0  3  TIGR02770 nickel_nikD: nickel import ATP-binding protein NikD
    3.3e-27   92.9   0.0    1.2e-13   48.2   0.0    3.4  3  TIGR02633 xylG: D-xylose ABC transporter, ATP-binding protein
    3.4e-27   92.8   0.2    8.7e-14   48.5   0.0    2.3  2  TIGR03796 NHLM_micro_ABC1: NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein
    1.3e-24   84.6   0.1    1.2e-11   41.7   0.0    2.6  2  TIGR01192 chvA: glucan exporter ATP-binding protein
    1.4e-20   71.6   1.9    2.6e-11   41.3   0.0    4.1  2  TIGR02323 CP_lyasePhnK: phosphonate C-P lyase system protein PhnK
    1.6e-20   71.1   0.0    9.5e-12   42.0   0.0    2.4  2  TIGR01193 bacteriocin_ABC: ABC-type bacteriocin transporter
      1e-19   67.6   0.4    1.6e-11   40.4   0.0    2.2  2  TIGR00956 3a01205: pleiotropic drug resistance family protein
    1.2e-19   68.1   0.0    1.1e-14   51.8   0.0    2.7  2  TIGR01194 cyc_pep_trnsptr: cyclic peptide transporter
    8.8e-16   54.4   0.0    2.6e-07   26.3   0.0    2.2  2  TIGR00957 MRP_assoc_pro: multi drug resistance-associated protein (MRP)
    6.1e-11   38.3   0.0    1.1e-06   24.2   0.0    2.2  2  TIGR01271 CFTR_protein: cystic fibrosis transmembrane conductor regulator (CFTR)
    1.7e-07   27.9   0.0     0.0056   13.0   0.0    3.1  2  TIGR00954 3a01203: peroxysomal long chain fatty acyl transporter
     0.0047   14.8   2.1        0.1   10.4   0.2    2.6  2  TIGR03499 FlhF: flagellar biosynthesis protein FlhF
  ------ inclusion threshold ------
      0.014   12.9   0.1        1.8    6.1   0.0    2.3  2  TIGR00041 DTMP_kinase: thymidylate kinase
      0.027   11.6   0.5        3.5    4.6   0.1    2.4  2  TIGR00064 ftsY: signal recognition particle-docking protein FtsY
      0.046    9.7   0.0        2.1    4.2   0.0    2.4  2  TIGR00630 uvra: excinuclease ABC subunit A
       0.13    8.3   2.2        1.7    4.5   0.1    2.1  2  TIGR00929 VirB4_CagE: type IV secretion/conjugal transfer ATPase, VirB4 family
       0.31    7.1   0.0       0.59    6.1   0.0    1.3  1  TIGR01069 mutS2: MutS2 family protein
        9.6    1.5   5.9        1.6    4.0   0.1    2.1  3  TIGR00606 rad50: rad50


Domain annotation for each model (and alignments):
>> TIGR01257  rim_protein: rim ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  200.7   5.9   6.7e-62   4.4e-60     665    1158 ..     349     822 ..     331     829 .. 0.82
   2 !   14.7   0.0     8e-06   0.00052    1207    1287 ..     841     919 ..     827     952 .. 0.83
   3 !  210.8   1.7   6.3e-65   4.1e-63    1680    2265 ..    1156    1764 ..    1134    1771 .. 0.77

  Alignments for each domain:
  == domain 1    score: 200.7 bits;  conditional E-value: 6.7e-62
   TIGR01257  665 ysvsm.tvksivlekelrlketlknqgvsnaviwctwfldsfsimslsiflltifimhgrilhysdpfilflfllafsiatimqsfllstlfskaslaaacsgviyftlyl..phi.lcfa.wqdrltadlkkavsllssvafgfgteylvrfeeqglglqwsnigksplegdefsfllsmk.mmlldaalygllawyldqvfpgd..ygtplpwyfllqesywlggegcstreeralekt.eplteeledpeypegindsfferelpglvpgvcvknlvkifeps.grpavdrlnitfyenqitaflghngagktttlsiltgllpptsgtvlvggkdietnldavrqslgmcpqhnilfhhltvaehilfyaqlkgrsweeaqlemeamledtglhhkrneeaqdlsgglqrklsvaiafvgdakvvvldeptsgvdpysrrsiwdlllkyrsgrtiimsthhmdeadllgdriaiisqgrlycsgtplflkncfgtglylt 1158
                   s+ + ++  iv+e+e rl e ++  g+s +   + w+l       l  ++ ti++     l  s+   +f+ ll  +++t+  +f+l  l+  +   +     +yf +++  p + l +a     +t  +     l+s  a  +g   +   e +g gl+ s +  s     + + l+ +  + +ld+ ly ++awyldqv+p     g    w f l          c  r  r++  t  p  +e+       g           g    v  + l k f       a++ l   + + ++t +lg+ngagktt++ il gl+ ptsg   v g+d+ t + ++r   g+c qh+ l+  lt+a+h+ +ya +k   +  a+ ++e  l++ g+  k n  a  lsgg +rkls+ +a++g+ k v+ldept+g+dp+srr++w+++l  ++ r+ +++th mdead+l   + ++s+g l +sg+p  lk  + +g++l 
  MMETSP1137-20121227|6947_1  349 SSIGFnAIEPIVVEREKRLLEGMQMMGLSSSANTAGWYLTFAICQVLGPVVTTIIVAISGFLDNSEVSFVFITLLLHTLSTVAFCFMLVPLIRSSK-QS----SLYFLVFMlaPGVgLYMAnVATDFTPAFFWPSCLVSVAAAPLGIGLMLDAEMNGDGLK-SAVDTS-----NGTPLVGVWlFQILDTLLYAFMAWYLDQVIPAItiSGGRRSWDFCLPR--------CG-RRRRSIGTTgTPXPDETAACVGGSG----------VGAGAAVRAHRLSKTFGSDpPVHALNDLTFEMADGEVTGLLGQNGAGKTTAINILCGLVRPTSGYARVRGHDVRTHIGTIRSFSGVCAQHDTLLDDLTLAQHVELYAGVKSVDKRRAREQVEGWLQQLGMSEKLNTRADTLSGGQRRKLSLILALLGEPKFVLLDEPTAGMDPHSRRAVWEFVLSSKAERATLLTTHFMDEADVLCSSLVVVSNGSLAASGSPSELKAKYASGYHLV 822 
                  4444325789*****************************755555678889999999999****************************99975433.32....345544431244412222133445666666678888889999**************97.334333.....33344444304589*****************85225888899998864........55.4556665541455555554444433..........455667777899999975312345555555567789*****************************************************************************************************************************************************************************************************9985 PP

  == domain 2    score: 14.7 bits;  conditional E-value: 8e-06
   TIGR01257 1207 elldlvyhhvpeaklvecigqelifllpnknfkqrayaslfreleetladlglssfgisdtpleeiflkvtedadsgslfa 1287
                   ll l + + pea l  +  +e  + lp       a+ +lf +l+   a+lg+ss+g+s   l+e f+k+ ++++    fa
  MMETSP1137-20121227|6947_1  841 RLLTLAQSYAPEATLEHASAEEARITLPSSA--SAAFGALFADLDAQTAQLGVSSYGLSLPSLQEAFIKILDEQKGAGGFA 919 
                  5778888999*************999**875..789*********************************987665444444 PP

  == domain 3    score: 210.8 bits;  conditional E-value: 6.3e-65
   TIGR01257 1680 avvaicvifamsfvpasfvlyliqervnkakhlqfisgvspttywltnflwdimnyavsaglvvgi.figfqkkaytssenlpalvallllygwavipmmypasflfdvpstayvalscanlfiginssaitfvl.e.....lfennrtllrlnallrkllivf.....phfclgrglidlalsqavtdvyaqfgeeysanpfqwdligknlvamavegvvyflltlli...qrhfflsrwiaepake..pivde.....dddvaeerqri..isggnktdilrlneltk.vys....g.tsspavdrlcvgvrpgecfgllgvngagktttfkmltgdttvtsgdatvagksiltnisdvhqnmgycpqfdaiddlltgrehlylyarlrgvpaeeiekvanwsikslglslyadrlagtysggnkrklstaial.igcpplvlldepttgmdpqarrmlwntivsiiregravvltshsmeecealctrlaimvkgafqclgtiqhlkskfgdgyivtmkikspkddllpdlnpveqffqgnfpgsvqrerhynllqfqvss.sslarifqllvshkdsllieeysvtqttldqvfvnfakqqte.tydlplhpraa 2265
                   +  ++++f m +v  +    l  er +++k++ ++sg+    +w   f+wd     +   l+vg+  +         +e lpalva  ll    vi m y  s+ f+    a   l ++ ++ g+  + +t  l +     +f+    ++  n ++  ++ v+       ++   g     +s+     y+ +  +ys+  ++  +      am+   v    l+ll+   + + + +r       +   ++d      d dv  er r+  +   + + ++r+  l k  y+    g  +  avd l + +  g cf llg ngagktt++++ltg+   ++gda++ g si + +sdv qn g+cpq+  + + lt r+hl l  rl+g     +        +  gl  +a + a   sgg +rkls+a+al  g p +v++depttg+d  +rr++w+ i     + r vvlt+h m+e++al+ r+ im  g +++lg+ qhlk+  g gy v +k ++  +  l  l          f    + + +  +l f+v    sl+ +f  +   k +l ++ ++++qttl++vf+ +a  +t+ +    l+ +aa
  MMETSP1137-20121227|6947_1 1156 QIAPLVMLFVMLIVTLATAKRLAAERYAHTKQVLLLSGLDVRIFWAGYFVWDGTHLLL---LIVGVgTVAAGASGAVVAEALPALVAGELLAIPGVILMAYLISLPFKNGEEATAFLVATFMLPGLLPTLLTTFLtDetvklVFQCILLVIPPNQIVSVIISVLnvqlnSIYAQDAGADAYGVSEYFRLSYTAYTYDYSSRTVNEGVGVGAGSAMIAATVTSSTLALLLyalELRKYTARAAVSTHSDglRVTDVdadavDADVKAERARVaaMRPDDAAAVVRMVGLRKdFYPrrcgGqKAVTAVDGLTLAIPNGTCFALLGPNGAGKTTAINLLTGELKPSAGDASIGGVSIHARLSDVFQNTGFCPQLKGLWESLTLRQHLSLVLRLKGHTGTALTAAIAKVEEEYGLREHAHKKAKLLSGGTRRKLSAAMALsCGNPSVVFVDEPTTGVDVGTRRFIWERIREAA-KRRVVVLTTHYMDEADALAQRIGIMSGGRLRVLGSPQHLKTVHGGGYRVELKAEAEAEAALTALV------MAHFTNVKRADSQRGTLVFDVGKgFSLSAVFAAFEEAKMTLGLQTFTMSQTTLEDVFLRVAAADTKrSKRTRLQVQAA 1764
                  45556788999999999999********************************877655...555552234445566789*****************************99999988888888889887776544412222112332222232344443333332111112345556666677777777888889999999888876643344555555555555555440003333444433322222124555411222458999****93345678899*****9998445433322245689********************************************************************************************9999999999****************************94588999*********************98865.579****************************************************9999988774......3344444445566789****975269********************************99987765134444555544 PP

>> TIGR01188  drrA: daunorubicin resistance ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  208.9   0.0   3.3e-64   2.1e-62       6     300 ..     607     908 ..     599     910 .. 0.84
   2 !  197.7   0.0   8.5e-61   5.5e-59       6     300 ..    1455    1746 ..    1452    1748 .. 0.88

  Alignments for each domain:
  == domain 1    score: 208.9 bits;  conditional E-value: 3.3e-64
   TIGR01188   6 fkAvdgvnlkveegevfglLGPnGAGKtttikmLttllkPdsGtarvaGyDvvrepdevRrsigvvpqkasvdedLtarenlellgelyglpkkeaeeraeellelvelkeaadkkvktysgGmrrrlelaasliaqPevlfLDEPtiGLDprtrraiwdlieelkkegvtilltthyleeadkladrvaiidkGkiiaedtpeeLKervgkevvev..errdikelk..kevsllaaeltesll.eleavevdsdkvklkve.eadetvkeileavkr..nkikissislkepsledvflkl 300
                 ++A++++++++  gev glLG nGAGKtt i++L++l++P+sG arv G+Dv  +  ++R   gv  q+ ++ +dLt  +++el++ +  + k++a+e++e  l+++ + e+ + ++ t+sgG+rr+l+l  +l+ +P+ + LDEPt G+Dp++rra+w+++ + k e  ++lltth ++ead l++ + ++++G ++a ++p eLK++  +    v     ++ e +  +++++   +l +s   e++  + + ++ +++ + +a+ +  ++++ +++  +++ +ss  l+ psl++ f+k+
  MMETSP1137-20121227|6947_1 607 VHALNDLTFEMADGEVTGLLGQNGAGKTTAINILCGLVRPTSGYARVRGHDVRTHIGTIRSFSGVCAQHDTLLDDLTLAQHVELYAGVKSVDKRRAREQVEGWLQQLGMSEKLNTRADTLSGGQRRKLSLILALLGEPKFVLLDEPTAGMDPHSRRAVWEFVLSSKAE-RATLLTTHFMDEADVLCSSLVVVSNGSLAASGSPSELKAKYASGYHLVaaLSPAVGEPAhtQAAAARLLTLAQSYApEATLEHASAEEARITLPsSASAAFGALFADLDAqtAQLGVSSYGLSLPSLQEAFIKI 908
                 78****************************************************************************************************************************************************************998766.56799**********************************87665433300333344433222223333445555553444455566777777774445556667776655115677899999*********997 PP

  == domain 2    score: 197.7 bits;  conditional E-value: 8.5e-61
   TIGR01188    6 fkAvdgvnlkveegevfglLGPnGAGKtttikmLttllkPdsGtarvaGyDvvrepdevRrsigvvpqkasvdedLtarenlellgelyglpkkeaeeraeellelvelkeaadkkvktysgGmrrrlelaasl.iaqPevlfLDEPtiGLDprtrraiwdlieelkkegvtilltthyleeadkladrvaiidkGkiiaedtpeeLKervgkevveverrdikelkkevsllaaelteslleleavevdsdkvklkveeadetvkeileavkrnkik..issislkepsledvflkl 300 
                  ++Avdg++l +++g+ f+lLGPnGAGKtt i++Lt+ lkP++G a + G  +    ++v ++ g  pq + + e+Lt r++l l+ +l g   ++  + ++++ e   l e a+kk+k +sgG rr+l+ a++l   +P+v+f+DEPt+G+D+ trr iw+ i+e  k    ++ltthy++ead+la+r++i++ G++   ++p+ LK+  g    +ve ++  e    +++l+a ++ + ++++++  +  +  ++v ++   ++++++a +++k++  ++ +++++ +ledvfl++
  MMETSP1137-20121227|6947_1 1455 VTAVDGLTLAIPNGTCFALLGPNGAGKTTAINLLTGELKPSAGDASIGGVSIHARLSDVFQNTGFCPQLKGLWESLTLRQHLSLVLRLKGHTGTALTAAIAKVEEEYGLREHAHKKAKLLSGGTRRKLSAAMALsCGNPSVVFVDEPTTGVDVGTRRFIWERIREAAKRR-VVVLTTHYMDEADALAQRIGIMSGGRLRVLGSPQHLKTVHG-GGYRVELKAEAEA---EAALTALVMAHFTNVKRADSQRGTLVFDVGKGF-SLSAVFAAFEEAKMTlgLQTFTMSQTTLEDVFLRV 1746
                  68************************************************************************************************************************************5689**************************998876.5789*********************************5555.5556555555444...444545555555456777777777777777654.46777777777766522799*************87 PP

>> TIGR03864  PQQ_ABC_ATP: ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  159.9   0.1   2.3e-49   1.5e-47       4     223 ..     594     815 ..     591     824 .. 0.93
   2 !  124.3   0.2   1.6e-38   1.1e-36      14     223 ..    1455    1664 ..    1450    1672 .. 0.93

  Alignments for each domain:
  == domain 1    score: 159.9 bits;  conditional E-value: 2.3e-49
   TIGR03864   4 veglsfaygk...rralddvsltvakgefvaLLGpnGaGkstLfslltrLyeakegeikvaGldlrrapkealarlGvvfqqstlDldlsveqnlryhaaLhGlsraeaeerieealarlglaeraeekvreLnGGhrrrveiarallhePklLLlDeatvGLDiesraalveevrelvreeglsvLWathlvdevea.edrlvvlhkGkvlaqGaaaelaaea 223
                  ++ls+++g+    +al+d+++++a ge++ LLG nGaGk+t +++l +L++ ++g  +v G+d+r++  ++ +  Gv  q+ tl  dl+++q ++ +a ++ + +++a+e++e  l++lg++e+ ++++ +L+GG+rr++ ++ all ePk +LlDe+t+G+D++sr+a+ e v +   +++ + L +th++de +    +lvv+ +G ++a+G+++el+a+ 
  MMETSP1137-20121227|6947_1 594 AHRLSKTFGSdppVHALNDLTFEMADGEVTGLLGQNGAGKTTAINILCGLVRPTSGYARVRGHDVRTHIGTIRSFSGVCAQHDTLLDDLTLAQHVELYAGVKSVDKRRAREQVEGWLQQLGMSEKLNTRADTLSGGQRRKLSLILALLGEPKFVLLDEPTAGMDPHSRRAVWEFVLS--SKAERATLLTTHFMDEADVlCSSLVVVSNGSLAASGSPSELKAKY 815
                 6788999997222589*************************************************************************************************************************************************************9955..567778999********9735789****************98875 PP

  == domain 2    score: 124.3 bits;  conditional E-value: 1.6e-38
   TIGR03864   14 rralddvsltvakgefvaLLGpnGaGkstLfslltrLyeakegeikvaGldlrrapkealarlGvvfqqstlDldlsveqnlryhaaLhGlsraeaeerieealarlglaeraeekvreLnGGhrrrveiaral.lhePklLLlDeatvGLDiesraalveevrelvreeglsvLWathlvdeveae.drlvvlhkGkvlaqGaaaelaaea 223 
                   +a+d+++l++++g++ aLLGpnGaGk+t ++llt+ ++ ++g+ ++ G++++++ ++++++ G   q + l   l+++q l+    L+G + ++ ++ i+++ ++ gl+e+a++k++ L+GG rr++  a al   +P+++ +De+t G+D+ +r+ + e +re + ++++ vL +th +de +a  +r+ ++  G+++  G++++l++ +
  MMETSP1137-20121227|6947_1 1455 VTAVDGLTLAIPNGTCFALLGPNGAGKTTAINLLTGELKPSAGDASIGGVSIHARLSDVFQNTGFCPQLKGLWESLTLRQHLSLVLRLKGHTGTALTAAIAKVEEEYGLREHAHKKAKLLSGGTRRKLSAAMALsCGNPSVVFVDEPTTGVDVGTRRFIWERIREAA-KRRVVVL-TTHYMDEADALaQRIGIMSGGRLRVLGSPQHLKTVH 1664
                  5799*********************************************************************************************************************************94579***************************99.5566565.9*******99615667999*********99998755 PP

>> TIGR01288  nodI: nodulation ABC transporter NodI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  141.8   0.0   7.3e-44   4.8e-42       9     222 ..     596     811 ..     589     821 .. 0.93
   2 !  123.3   0.1   3.1e-38     2e-36      15     240 ..    1451    1678 ..    1434    1752 .. 0.85

  Alignments for each domain:
  == domain 1    score: 141.8 bits;  conditional E-value: 7.3e-44
   TIGR01288   9 gvsksygdk...vvvndlsftiaagecfgllgpngagkstiarlvlglispdegkitvlgepvpararlarakigvvpqfdnldreftvrenllvfgryfglstreieevipsllefarleskadvrvadlsggmkrrltlaralindpqllildepttgldpharhliwerlrsllargktilltthlmeeaerlcdrlcvleagrkiaegrpdal 222
                  +sk++g       +ndl+f +a ge+ gllg ngagk+t   ++ gl+ p  g   v g++v +++   r+  gv +q d+l  ++t  + + ++    +++ r   e +   l+   +  k ++r  +lsgg +r+l+l  al+ +p++++ldept+g+dph+r  +we + s  a   + lltth+m+ea+ lc  l+v+ +g   a g p  l
  MMETSP1137-20121227|6947_1 596 RLSKTFGSDppvHALNDLTFEMADGEVTGLLGQNGAGKTTAINILCGLVRPTSGYARVRGHDVRTHIGTIRSFSGVCAQHDTLLDDLTLAQHVELYAGVKSVDKRRAREQVEGWLQQLGMSEKLNTRADTLSGGQRRKLSLILALLGEPKFVLLDEPTAGMDPHSRRAVWEFVLSSKAER-ATLLTTHFMDEADVLCSSLVVVSNGSLAASGSPSEL 811
                 5678888652213579************************************************************************************************************************************************************99999875.5589****************************9876 PP

  == domain 2    score: 123.3 bits;  conditional E-value: 3.1e-38
   TIGR01288   15 gdkvv..vndlsftiaagecfgllgpngagkstiarlvlglispdegkitvlgepvpararlarakigvvpqfdnldreftvrenllvfgryfglstreieevipsllefarleskadvrvadlsggmkrrltlaral.indpqllildepttgldpharhliwerlrsllargktilltthlmeeaerlcdrlcvleagrkiaegrpdalideqigcdvieiyggdld 240 
                  g+k v  v+ l+++i +g cf llgpngagk+t   l+ g   p+ g  ++ g  + ar      + g  pq+  l + +t r+ l +  r  g +   + ++i  + e   l  +a+ +   lsgg +r+l+ a+al   +p ++ +depttg+d  +r +iwer+r   a+ + ++ltth+m+ea+ l +r+ ++  gr  + g p+ l   + g   +e+      
  MMETSP1137-20121227|6947_1 1451 GQKAVtaVDGLTLAIPNGTCFALLGPNGAGKTTAINLLTGELKPSAGDASIGGVSIHARLSDVFQNTGFCPQLKGLWESLTLRQHLSLVLRLKGHTGTALTAAIAKVEEEYGLREHAHKKAKLLSGGTRRKLSAAMALsCGNPSVVFVDEPTTGVDVGTRRFIWERIREA-AKRRVVVLTTHYMDEADALAQRIGIMSGGRLRVLGSPQHLKTVHGGGYRVELKAEAEA 1678
                  5554434899*******************************************************************************************************************************94479**************************85.88899**********************************9999998888887765443 PP

>> TIGR03522  GldA_ABC_ATP: gliding motility-associated ABC transporter ATP-binding subunit GldA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  133.0   0.0   4.8e-41   3.1e-39       3     222 ..     592     814 ..     590     824 .. 0.96
   2 !  121.2   0.0   1.9e-37   1.3e-35      16     298 ..    1456    1744 ..    1447    1747 .. 0.88

  Alignments for each domain:
  == domain 1    score: 133.0 bits;  conditional E-value: 4.8e-41
   TIGR03522   3 vevsdlsklygkq...kaldevsfeaekGeivGflGPnGaGkstlmkiltgylkadsGsvavagedvlknslevrkniGylPehnPlyldlyvreylefsaalyklkgrklkkrveelielvGlkaeqhkkigalskGyrqrvGlakallhdPkvlildePttGldPnqlveirevikeiakdktvilsthimqevealcdrviiinkGkivadkkleelkaa 222
                 v+ + lsk++g++   +al++++fe+  Ge++G+lG nGaGk+t + il g ++++sG + v g+dv ++   +r + G   +h+ l  dl + +++e+ a++  +++r+ +++ve  +++ G++++   + + ls G r++  l  all +Pk ++ldePt+G+dP    ++ e + +   +++ +l+th m e + lc  ++++ +G + a+ + +elka+
  MMETSP1137-20121227|6947_1 592 VRAHRLSKTFGSDppvHALNDLTFEMADGEVTGLLGQNGAGKTTAINILCGLVRPTSGYARVRGHDVRTHIGTIRSFSGVCAQHDTLLDDLTLAQHVELYAGVKSVDKRRAREQVEGWLQQLGMSEKLNTRADTLSGGQRRKLSLILALLGEPKFVLLDEPTAGMDPHSRRAVWEFVLSSKAERATLLTTHFMDEADVLCSSLVVVSNGSLAASGSPSELKAK 814
                 677899*****97555799****************************************************************************************************************************************************************9*********************************9998888765 PP

  == domain 2    score: 121.2 bits;  conditional E-value: 1.9e-37
   TIGR03522   16 kaldevsfeaekGeivGflGPnGaGkstlmkiltgylkadsGsvavagedvlknslevrkniGylPehnPlyldlyvreylefsaalyklkgrklkkrveelielvGlkaeqhkkigalskGyrqrvGlakal.lhdPkvlildePttGldPnqlveirevikeiakdktvilsthimqevealcdrviiinkGkivadkkleelkaaek.kkvievefeeeidlqlle.kleevsevkklkgntykltveteedvr.keifdlakekglkl..lelkqkeknlesvfr 298 
                   a+d +++++ +G    +lGPnGaGk+t + +ltg lk+++G + + g ++     +v +n G+ P+   l++ l +r++l +   l + +g++l   ++++ e+ Gl++ +hkk   ls G r++   a al   +P+v+ +dePttG+d      i e i+e ak + v+l+th m e +al +r+ i+  G++ +  + ++lk+++     +e++ e e ++ l + ++ + ++vk+  ++  +l+++  +    +++f + +e +++l    +  ++ +le+vf 
  MMETSP1137-20121227|6947_1 1456 TAVDGLTLAIPNGTCFALLGPNGAGKTTAINLLTGELKPSAGDASIGGVSIHARLSDVFQNTGFCPQLKGLWESLTLRQHLSLVLRLKGHTGTALTAAIAKVEEEYGLREHAHKKAKLLSGGTRRKLSAAMALsCGNPSVVFVDEPTTGVDVGTRRFIWERIREAAKRRVVVLTTHYMDEADALAQRIGIMSGGRLRVLGSPQHLKTVHGgGYRVELKAEAEAEAALTAlVMAHFTNVKRADSQRGTLVFDVGKGFSlSAVFAAFEEAKMTLglQTFTMSQTTLEDVFL 1744
                  5899********************************************************************************************************************************9457************************************************************999999999998876566666666666666554245677778888888888888887776526677777666554321445567789999995 PP

>> TIGR00968  3a0106s01: sulfate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  108.2   0.0   1.5e-33   9.5e-32       5     225 ..     596     818 ..     592     825 .. 0.92
   2 !   85.9   0.0   9.5e-27   6.2e-25      13     219 ..    1455    1661 ..    1447    1672 .. 0.93

  Alignments for each domain:
  == domain 1    score: 108.2 bits;  conditional E-value: 1.5e-33
   TIGR00968   5 nvskrfGd...fqalddvdlevktGslvallGpsGsGkstllrviaGlekpdsGrilleGrdv.trvkvrdreiGfvfqhyalfkhltvrdniafGleirkkdkakikakveellelvqleklgdrypsqlsGGqrqrvalaralavepqvllldepfgaldakvrkelrawlrklhdevkvttvfvthdqeealevadrivvlekGkieqvgsaeevydepata 225
                  +sk fG+   ++al+d+ +e+ +G++++llG  G+Gk+t + ++ Gl +p+sG  +++G+dv t++ + +   G   qh +l+  lt+ + + +   ++  dk + +++ve  l+ +++++  +   + lsGGqr++++l  al  ep+ +lldep + +d + r+ +  w   l  + + +t++ th  +ea  +   +vv+++G +   gs++e+  + a+ 
  MMETSP1137-20121227|6947_1 596 RLSKTFGSdppVHALNDLTFEMADGEVTGLLGQNGAGKTTAINILCGLVRPTSGYARVRGHDVrTHIGTIRSFSGVCAQHDTLLDDLTLAQHVELYAGVKSVDKRRAREQVEGWLQQLGMSEKLNTRADTLSGGQRRKLSLILALLGEPKFVLLDEPTAGMDPHSRRAV--WEFVLSSKAERATLLTTHFMDEADVLCSSLVVVSNGSLAASGSPSELKAKYASG 818
                 5789999755579*************************************************9455666666679999******************************************99999999**************************************986..7777999999************************************99887765 PP

  == domain 2    score: 85.9 bits;  conditional E-value: 9.5e-27
   TIGR00968   13 fqalddvdlevktGslvallGpsGsGkstllrviaGlekpdsGrilleGrdv.trvkvrdreiGfvfqhyalfkhltvrdniafGleirkkdkakikakveellelvqleklgdrypsqlsGGqrqrvalaralav.epqvllldepfgaldakvrkelrawlrklhdevkvttvfvthdqeealevadrivvlekGkieqvgsaeevy 219 
                  ++a+d + l +++G   allGp G+Gk+t + +++G  kp +G   + G  + +r++   ++ Gf  q   l++ lt+r+ +++ l+++ ++ ++  a + ++ e  +l + +++  + lsGG r++++ a al+  +p v+++dep + +d   r+ + + +r+  ++     v+ th  +ea  +a+ri +++ G++  +gs++++ 
  MMETSP1137-20121227|6947_1 1455 VTAVDGLTLAIPNGTCFALLGPNGAGKTTAINLLTGELKPSAGDASIGGVSIhARLSDVFQNTGFCPQLKGLWESLTLRQHLSLVLRLKGHTGTALTAAIAKVEEEYGLREHAHKKAKLLSGGTRRKLSAAMALSCgNPSVVFVDEPTTGVDVGTRRFIWERIREAAKR--RVVVLTTHYMDEADALAQRIGIMSGGRLRVLGSPQHLK 1661
                  67899999*****************************************987367888889*************************************************************************8758******************9987777776554..556999****************************9875 PP

>> TIGR03411  urea_trans_UrtD: urea ABC transporter, ATP-binding protein UrtD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.5   0.0   8.9e-32   5.8e-30      15     230 ..     607     812 ..     592     816 .. 0.89
   2 !   85.4   0.0   1.5e-26   9.7e-25      15     226 ..    1455    1657 ..    1451    1664 .. 0.92

  Alignments for each domain:
  == domain 1    score: 102.5 bits;  conditional E-value: 8.9e-32
   TIGR03411  15 fkalndlslsveegelrviiGpnGaGkttllDvitGktrpdeGsvlfkgkdltklkeaeiarlGigRkfqkpsvfeeltvlenlelalkadksvlallfarlskeekerieevleligLeekadkkaglLshGqkqwLeigmllvqepkllllDePvaGmtdeetektaellkelakersvvvvehDmefvrelaekvtvlheGkvlaeGsldevq 230
                 ++alndl++++++ge+  ++G nGaGktt +++++G +rp++G + ++g+d++ +  +  + +G++   q+ +++++lt ++ +el         a + +  +++++e++e  l+++g++ek +++a +Ls Gq+  L + + l+ epk++llDeP+aGm  + ++ + e++ + + er+ ++  h m+  + l +++ v+++G++ a Gs  e++
  MMETSP1137-20121227|6947_1 607 VHALNDLTFEMADGEVTGLLGQNGAGKTTAINILCGLVRPTSGYARVRGHDVRTHIGTIRSFSGVCA--QHDTLLDDLTLAQHVELY--------AGVKSVDKRRAREQVEGWLQQLGMSEKLNTRADTLSGGQRRKLSLILALLGEPKFVLLDEPTAGMDPHSRRAVWEFVLSSKAERATLLTTHFMDEADVLCSSLVVVSNGSLAASGSPSELK 812
                 68**************************************************988777777777774..566666666666666664........44445566778899****************************************************************************************************9977766 PP

  == domain 2    score: 85.4 bits;  conditional E-value: 1.5e-26
   TIGR03411   15 fkalndlslsveegelrviiGpnGaGkttllDvitGktrpdeGsvlfkgkdltklkeaeiarlGigRkfqkpsvfeeltvlenlelalkadksvlallfarlskeekerieevleligLeekadkkaglLshGqkqwLeigmll.vqepkllllDePvaGmtdeetektaellkelakersvvvvehDmefvrelaekvtvlheGkvlaeGsl 226 
                  ++a++ l+l++ +g + +++GpnGaGktt ++++tG  +p++G++ + g ++         ++G +   q   ++e+lt ++ l+l l+ + ++ ++l        ++ i++v e  gL+e+a+kka lLs G +  L  +m l + +p+++++DeP++G+    ++ + e ++e ak+r+vv+  h m+  ++la+++ +++ G++ + Gs 
  MMETSP1137-20121227|6947_1 1455 VTAVDGLTLAIPNGTCFALLGPNGAGKTTAINLLTGELKPSAGDASIGGVSIHARLSDVFQNTGFCP--QLKGLWESLTLRQHLSLVLRLKGHTGTAL--------TAAIAKVEEEYGLREHAHKKAKLLSGGTRRKLSAAMALsCGNPSVVFVDEPTTGVDVGTRRFIWERIREAAKRRVVVLTTHYMDEADALAQRIGIMSGGRLRVLGSP 1657
                  789***************************************************9999999999997..66789**********99998877777777........67788899999*************************883589*********************************************************98777765 PP

>> TIGR03265  PhnT2: putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  101.2   0.0   2.3e-31   1.5e-29       6     228 ..     593     817 ..     589     864 .. 0.92
   2 !   76.9   0.0   5.6e-24   3.6e-22      16     222 ..    1454    1660 ..    1446    1672 .. 0.94

  Alignments for each domain:
  == domain 1    score: 101.2 bits;  conditional E-value: 2.3e-31
   TIGR03265   6 sieeiekefe...aftalkdislsvkkgelvclLGPsGCGkttLLriiaGLekqdaGaillggrditrlppqkrdy.GivfqsYaLfPnltvaeniayGLknkklkreevaerveelLelvglsgseekyPgqlsGGqqqrvaLaralalsPglLLLDePlsaLDakvrekLreelkklqrklgvttimvthdqeealslaDrivvmnkgkieqvgtPeeiYeqPat 228
                 + ++++k+f+    ++al+d+ +++++ge+  lLG  G Gktt + i++GL ++++G   + g+d+ +   + r + G+  q  +L  +lt+a+ ++     k +++++++e+ve +L+ +g+s++ +     lsGGq+++++L  al   P+++LLDeP + +D + r  + e +  l  k + +t++ th  +ea +l+  +vv+ +g++   g+P+e+  + a+
  MMETSP1137-20121227|6947_1 593 RAHRLSKTFGsdpPVHALNDLTFEMADGEVTGLLGQNGAGKTTAINILCGLVRPTSGYARVRGHDVRTHIGTIRSFsGVCAQHDTLLDDLTLAQHVELYAGVKSVDKRRAREQVEGWLQQLGMSEKLNTRADTLSGGQRRKLSLILALLGEPKFVLLDEPTAGMDPHSRRAVWE-F-VLSSKAERATLLTTHFMDEADVLCSSLVVVSNGSLAASGSPSELKAKYAS 817
                 5677888888544579***************************************************999999*9978999****************99999999***************************************************************988755.4.48899999***********************************9776555 PP

  == domain 2    score: 76.9 bits;  conditional E-value: 5.6e-24
   TIGR03265   16 aftalkdislsvkkgelvclLGPsGCGkttLLriiaGLekqdaGaillggrdi.trlppqkrdyGivfqsYaLfPnltvaeniayGLknkklkreevaerveelLelvglsgseekyPgqlsGGqqqrvaLaralal.sPglLLLDePlsaLDakvrekLreelkklqrklgvttimvthdqeealslaDrivvmnkgkieqvgtPeei 222 
                  a+ta++ + l++ +g   +lLGP G Gktt + +++G  k++aG   +gg  i +rl+   ++ G+  q   L+ +lt+++ ++  L+ k+ + +  ++ ++++ e  gl + ++k    lsGG +++++ a al    P+++++DeP   +D   r  + e +++  ++  v  ++ th  +ea +la ri +m  g++  +g+P+ +
  MMETSP1137-20121227|6947_1 1454 AVTAVDGLTLAIPNGTCFALLGPNGAGKTTAINLLTGELKPSAGDASIGGVSIhARLSDVFQNTGFCPQLKGLWESLTLRQHLSLVLRLKGHTGTALTAAIAKVEEEYGLREHAHKKAKLLSGGTRRKLSAAMALSCgNPSVVFVDEPTTGVDVGTRRFIWERIREAAKRRVV--VLTTHYMDEADALAQRIGIMSGGRLRVLGSPQHL 1660
                  67899999******************************************99945788889***********************************************************************9998647**************************98877554..678****************************986 PP

>> TIGR02673  FtsE: cell division ATP-binding protein FtsE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  101.4   0.0   1.8e-31   1.2e-29       3     195 ..     593     782 ..     591     800 .. 0.91
   2 !   70.3   0.0   5.8e-22   3.8e-20      13     212 ..    1453    1648 ..    1449    1650 .. 0.93

  Alignments for each domain:
  == domain 1    score: 101.4 bits;  conditional E-value: 1.8e-31
   TIGR02673   3 elekvskeya..agveaLkdvslkiekgeflfltGasGaGkttllklllgaekpsrGevevagedvarlrerelpllRrkigvvfqDfkllkdrtvlenvalalevrgkkeeeiqkrveevlelvgledkakalpeelsgGeqqRvaiaRaivnkPelllaDePtGnlDdelserildllkelnkrGttvivath 195
                 + +++sk++     v+aL+d+++++  ge++ l G+ GaGktt +++l+g  +p++G  +v g+dv++    ++ ++R   gv  q   ll+d t ++ v l   v+  ++++ +++ve  l+++g+++k ++ +++lsgG + + ++  a++ +P+ +l DePt  +D++  + + + + + +++ +t +++th
  MMETSP1137-20121227|6947_1 593 RAHRLSKTFGsdPPVHALNDLTFEMADGEVTGLLGQNGAGKTTAINILCGLVRPTSGYARVRGHDVRT----HIGTIRSFSGVCAQHDTLLDDLTLAQHVELYAGVKSVDKRRAREQVEGWLQQLGMSEKLNTRADTLSGGQRRKLSLILALLGEPKFVLLDEPTAGMDPHSRRAVWEFVLSSKAERAT-LLTTH 782
                 5567778887334689*************************************************986....5899****************************************************************************************************9988777776666.56777 PP

  == domain 2    score: 70.3 bits;  conditional E-value: 5.8e-22
   TIGR02673   13 agveaLkdvslkiekgeflfltGasGaGkttllklllgaekpsrGevevagedvarlrerelpllRrkigvvfqDfkllkdrtvlenvalalevrgkkeeeiqkrveevlelvgledkakalpeelsgGeqqRvaiaRai.vnkPelllaDePtGnlDdelserildllkelnkrGttvivathdeelvervkkrvlelek 212 
                  ++v+a++ ++l i +g    l G+ GaGktt ++ll+g +kps+G+ ++ g +++     +l+ + ++ g   q   l ++ t  + + l+l+++g++ ++++  + +v e  gl+++a+++++ lsgG + + + a a+   +P+++ +DePt  +D  + + i + ++e+ kr + v+++th  + +++ ++r+ +++ 
  MMETSP1137-20121227|6947_1 1453 KAVTAVDGLTLAIPNGTCFALLGPNGAGKTTAINLLTGELKPSAGDASIGGVSIH----ARLSDVFQNTGFCPQLKGLWESLTLRQHLSLVLRLKGHTGTALTAAIAKVEEEYGLREHAHKKAKLLSGGTRRKLSAAMALsCGNPSVVFVDEPTTGVDVGTRRFIWERIREAAKRRV-VVLTTHYMDEADALAQRIGIMSG 1648
                  56789999*******************************************9986....5788999*************************************************************************95689**************************9999865.7899**99999999888877665 PP

>> TIGR03740  galliderm_ABC: lantibiotic protection ABC transporter, ATP-binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.4   0.0   2.1e-28   1.4e-26       3     204 ..     594     804 ..     592     812 .. 0.87
   2 !   78.8   0.0   1.5e-24   9.9e-23      13     204 ..    1455    1653 ..    1447    1661 .. 0.87

  Alignments for each domain:
  == domain 1    score: 91.4 bits;  conditional E-value: 2.1e-28
   TIGR03740   3 tknlskkfkkq...avvnnvslkvkknsvygllGpnGaGkstllklltGllrktsGeilldgrewtrkdlkki....GsliesPalyenltarenlkvrtlllglpesr....ieevlkivdlentekkkakqfslGmkqrlGiaiallnkPkllildePtnGldPlGiqelreliksfpekGitvilsshilsevelladhiGiiseGklky 204
                  + lsk+f+     +++n++++++ + +v gllG nGaGk+t + +l+Gl+r+tsG   + g+++   ++  i    G+  ++ +l ++lt  + +++ + ++++++ r    +e  l+ ++++++   +a+ +s G +++l + +all +Pk+++ldePt G+dP   + + e++ s + +  t +l++h + e ++l+  + ++s+G l  
  MMETSP1137-20121227|6947_1 594 AHRLSKTFGSDppvHALNDLTFEMADGEVTGLLGQNGAGKTTAINILCGLVRPTSGYARVRGHDVRT-HIGTIrsfsGVCAQHDTLLDDLTLAQHVELYAGVKSVDKRRareqVEGWLQQLGMSEKLNTRADTLSGGQRRKLSLILALLGEPKFVLLDEPTAGMDPHSRRAVWEFVLSSKAERAT-LLTTHFMDEADVLCSSLVVVSNGSLAA 804
                 57789999986334789999*******************************************9854.44444222366778899********************99872222555689999999999**************************************************9998877.6899*******************9975 PP

  == domain 2    score: 78.8 bits;  conditional E-value: 1.5e-24
   TIGR03740   13 qavvnnvslkvkknsvygllGpnGaGkstllklltGllrktsGeilldgrewtr...kdlkkiGsliesPalyenltarenlkvrtlllglp....esrieevlkivdlentekkkakqfslGmkqrlGiaial.lnkPkllildePtnGldPlGiqelreliksfpekGitvilsshilsevelladhiGiiseGklky 204 
                   ++v+ ++l++++ + ++llGpnGaGk+t + lltG l++++G+  + g ++       +++ G   +   l+e lt r+ l ++  l+g      ++ i +v +  +l++   kkak +s G +++l  a+al   +P ++ +dePt G+d    + + e i+   ++ + v+l++h + e + la  iGi+s G+l+ 
  MMETSP1137-20121227|6947_1 1455 VTAVDGLTLAIPNGTCFALLGPNGAGKTTAINLLTGELKPSAGDASIGGVSIHArlsDVFQNTGFCPQLKGLWESLTLRQHLSLVLRLKGHTgtalTAAIAKVEEEYGLREHAHKKAKLLSGGTRRKLSAAMALsCGNPSVVFVDEPTTGVDVGTRRFIWERIREAAKRRV-VVLTTHYMDEADALAQRIGIMSGGRLRV 1653
                  578999*****************************************99876541214578999999999***********999999888661122556778888889*************************95579**************8777788999999887765.7899********************9985 PP

>> TIGR01186  proV: glycine betaine/L-proline transport ATP binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.7   0.0   1.6e-28   1.1e-26       8     222 ..     609     816 ..     603     822 .. 0.93
   2 !   77.5   0.0   3.3e-24   2.2e-22       4     217 ..    1450    1660 ..    1447    1698 .. 0.90

  Alignments for each domain:
  == domain 1    score: 91.7 bits;  conditional E-value: 1.6e-28
   TIGR01186   8 gvndvdleieeGeiiviiGlsGsGkstlvrllnrliePtaGkilidGediaeisdaelrevrrkkiamviqkialfPhmtildnislglellkideqerkekalealklvdleeyedryPdelsGGmqqrvGlaralaaePdlllmdeafsaldPlirdelqdelvklqkklqktivfithdldealrlgdrivilkaGeivqvGtPdeilrnPa 222
                 ++nd+ +e+++Ge+  ++G  G+Gk+t + +l  l+ Pt+G   + G+d+       +    r   ++  q+ +l+   t+ + ++l   ++ +d+++ +e+    l+++++ e  ++  d lsGG+++++ l+ al  eP+ +l+de+ + +dP  r  + +  v l +k +++ ++ th +dea  l+  +v++ +G +   G+P e+    a
  MMETSP1137-20121227|6947_1 609 ALNDLTFEMADGEVTGLLGQNGAGKTTAINILCGLVRPTSGYARVRGHDVRTHI-GTI----RSFSGVCAQHDTLLDDLTLAQHVELYAGVKSVDKRRAREQVEGWLQQLGMSEKLNTRADTLSGGQRRKLSLILALLGEPKFVLLDEPTAGMDPHSRRAVWEF-V-LSSKAERATLLTTHFMDEADVLCSSLVVVSNGSLAASGSPSELKAKYA 816
                 789**********************************************96543.334....77789999******************************************999********************************************99864.4.78999999*********************************9876655 PP

  == domain 2    score: 77.5 bits;  conditional E-value: 3.3e-24
   TIGR01186    4 Glklgvndvd...leieeGeiiviiGlsGsGkstlvrllnrliePtaGkilidGediaeisdaelrevrrkkiamviqkialfPhmtildnislglellkideqerkekalealklvdleeyedryPdelsGGmqqrvGlaralaa.ePdlllmdeafsaldPlirdelqdelvklqkklqktivfithdldealrlgdrivilkaGeivqvGtPdei 217 
                  G++++v  vd   l+i +G  + ++G+ G+Gk+t + ll   + P+aG   i G++i     + +     +  ++  q  +l    t+ + +sl+l+l++           ++    +l e++++  + lsGG ++++  a al+  +P ++++de+ + +d  +r  + + + +  +  ++ +v+ th +dea  l+ ri i+  G +  +G+P+++
  MMETSP1137-20121227|6947_1 1450 GGQKAVTAVDgltLAIPNGTCFALLGPNGAGKTTAINLLTGELKPSAGDASIGGVSIHARLSDVF-----QNTGFCPQLKGLWESLTLRQHLSLVLRLKGHTGTALTAAIAKVEEEYGLREHAHKKAKLLSGGTRRKLSAAMALSCgNPSVVFVDEPTTGVDVGTRRFIWERIRE--AAKRRVVVLTTHYMDEADALAQRIGIMSGGRLRVLGSPQHL 1660
                  5555554443333********************************************76544444.....689*****************************99999999999999****************************8549***********************9986..556799********************************876 PP

>> TIGR02982  heterocyst_DevA: ABC exporter ATP-binding subunit, DevA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.5   0.0   1.1e-29   7.2e-28       4     200 ..     594     782 ..     591     802 .. 0.90
   2 !   68.7   0.0   1.7e-21   1.1e-19      22     219 ..    1459    1651 ..    1439    1652 .. 0.90

  Alignments for each domain:
  == domain 1    score: 95.5 bits;  conditional E-value: 1.1e-29
   TIGR02982   4 irelnhyygkgelrkqvlfdinleiepgeiviltGpsGsGkttlltligglrsvqeGelkvlgkelkgasekelvqvrrkiGyifqahnllesltaeqnvrmalelkeklsakeakakaeelleavgleerldykpedlsgGqkqrvaiaralvarPklvladePtaaldkksgrevvellqklareqgttillvth 200
                  ++l+  +g++    + l+d+ +e+++ge+  l G+ G+Gktt ++++ gl +  +G  +v g++++    +++  +r   G+  q+  ll+ lt  q v++ + +k+   ++ a++++e +l+++g+ e+l+ +++ lsgGq++++++  al  +Pk+vl dePta +d +s r+v e +     e+  + ll th
  MMETSP1137-20121227|6947_1 594 AHRLSKTFGSDP-PVHALNDLTFEMADGEVTGLLGQNGAGKTTAINILCGLVRPTSGYARVRGHDVR----THIGTIRSFSGVCAQHDTLLDDLTLAQHVELYAGVKSV-DKRRAREQVEGWLQQLGMSEKLNTRADTLSGGQRRKLSLILALLGEPKFVLLDEPTAGMDPHSRRAVWEFVLSSKAER--ATLLTTH 782
                 567777888765.45789**********************************************985....68999*****************************9876.99999****************************************************************987665555..4577777 PP

  == domain 2    score: 68.7 bits;  conditional E-value: 1.7e-21
   TIGR02982   22 fdinleiepgeiviltGpsGsGkttlltligglrsvqeGelkvlgkelkgasekelvqvrrkiGyifqahnllesltaeqnvrmalelkeklsakeakakaeelleavgleerldykpedlsgGqkqrvaiaralv.arPklvladePtaaldkksgrevvellqklareqgttillvthdnrild.vadrivkmedGkl 219 
                    + l i +g    l Gp G+Gktt ++l++g  +   G+ ++ g +++    ++l +v +++G+  q   l eslt +q + + l lk + + ++ +a  +++ e+ gl e+ ++k++ lsgG +++++ a al   +P++v+ dePt+ +d  + r + e +++ a+ +   ++l th     d +a+ri  m  G+l
  MMETSP1137-20121227|6947_1 1459 DGLTLAIPNGTCFALLGPNGAGKTTAINLLTGELKPSAGDASIGGVSIH----ARLSDVFQNTGFCPQLKGLWESLTLRQHLSLVLRLKGH-TGTALTAAIAKVEEEYGLREHAHKKAKLLSGGTRRKLSAAMALScGNPSVVFVDEPTTGVDVGTRRFIWERIREAAKRR--VVVLTTHYMDEADaLAQRIGIMSGGRL 1651
                  567899999***********************999*****999998876....57999*******************************99.6777888889999******************************6379****************************9987..578889976555438999999998887 PP

>> TIGR03410  urea_trans_UrtE: urea ABC transporter, ATP-binding protein UrtE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0       9.1   5.9e+02     113     143 ..      78     109 ..      69     126 .. 0.73
   2 !   89.5   0.0   7.4e-28   4.8e-26      14     222 ..     608     814 ..     594     821 .. 0.87
   3 !   72.8   0.0   9.1e-23   5.9e-21      14     219 ..    1456    1660 ..    1451    1664 .. 0.89

  Alignments for each domain:
  == domain 1    score: -2.5 bits;  conditional E-value: 9.1
   TIGR03410 113 eiyelFPvlkemlkRrgGdLsGGqq.qqlaia 143
                  + + F v +++++ r G  +GG +  q+a+a
  MMETSP1137-20121227|6947_1  78 AVVASFAVASTVKQDRQGVAAGGCRsSQVAMA 109
                 67789999999999999999998662688876 PP

  == domain 2    score: 89.5 bits;  conditional E-value: 7.4e-28
   TIGR03410  14 evlrdvslevekgevvavlGrngvGkttllkalvgllkvksGeielegeditklkpeervkaGiayvpqGreifpkltveenlelglealkkkekkipeeiyelFPvl..kemlkRrgGdLsGGqqqqlaiaRaLvtePklllLDePteGiqPsiikeiekvikelakekdlaillveqvldfaleladrylvlerGevvaegekeeldee 222
                 ++l+d+++e+++gev+ +lG+ng+Gktt +  l+gl++ +sG  +++g+d++++  + r  +G+    q  +++ +lt +  +el + +++ ++++  e++      l  +e l+ r+  LsGGq+ +l++  aL+ ePk++lLDePt G+ P   + + + +  l+++ + a ll  + +d a  l  +++v+++G++ a+g+ +el+++
  MMETSP1137-20121227|6947_1 608 HALNDLTFEMADGEVTGLLGQNGAGKTTAINILCGLVRPTSGYARVRGHDVRTHIGTIRSFSGVC--AQHDTLLDDLTLAQHVELYAGVKSVDKRRAREQVEGWLQQLgmSEKLNTRADTLSGGQRRKLSLILALLGEPKFVLLDEPTAGMDPHSRRAVWEFV--LSSKAERATLLTTHFMDEADVLCSSLVVVSNGSLAASGSPSELKAK 814
                 789******************************************************99999985..8***********9998876665555555555555444443311556677799***********************************999999987..566677899*****************************99998765 PP

  == domain 3    score: 72.8 bits;  conditional E-value: 9.1e-23
   TIGR03410   14 evlrdvslevekgevvavlGrngvGkttllkalvgllkvksGeielegeditklkpeervkaGiayvpqGreifpkltveenlelglealkkkekkipeeiyelF..PvlkemlkRrgGdLsGGqqqqlaiaRaLv.tePklllLDePteGiqPsiikeiekvikelakekdlaillveqvldfaleladrylvlerGevvaegekeel 219 
                  +++ +++l +++g + a+lG ng+Gktt +  l+g lk ++G  ++ g +i++  +   v +  ++ pq + +  +lt +  l l+l+ + ++ +++++ i ++     l+e  ++++  LsGG + +l+ a aL   +P ++ +DePt G+     + i + i+e ak+    ++l  +++d a +la+r+ +++ G++   g+ ++l
  MMETSP1137-20121227|6947_1 1456 TAVDGLTLAIPNGTCFALLGPNGAGKTTAINLLTGELKPSAGDASIGGVSIHARLSD--VFQNTGFCPQLKGLWESLTLRQHLSLVLRLKGHTGTALTAAIAKVEeeYGLREHAHKKAKLLSGGTRRKLSAAMALScGNPSVVFVDEPTTGVDVGTRRFIWERIREAAKR--RVVVLTTHYMDEADALAQRIGIMSGGRLRVLGSPQHL 1660
                  56889********************************************99987765..6667789************************999888877776543114699************************6269*****************999*9999998876..47899*********************99887776655 PP

>> TIGR02857  CydD: thiol reductant ABC exporter, CydD subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.2   0.1   7.3e-30   4.8e-28     321     516 ..     591     783 ..     570     796 .. 0.87
   2 ?   -2.2   0.1       4.8   3.1e+02     151     171 ..    1155    1175 ..    1143    1188 .. 0.65
   3 !   79.2   0.2     1e-24   6.6e-23     336     521 ..    1456    1637 ..    1409    1645 .. 0.85

  Alignments for each domain:
  == domain 1    score: 96.2 bits;  conditional E-value: 7.3e-30
   TIGR02857 321 slelenvsvay.egrk.palkevsltvepgelvalvGaSGaGKstllklllgfvepteGailvngaelaeldadswrkqiawvpQkPllfeg.tvaenirlarkdaseaevkealeragldelvkalpqgleteiGergagLSgGqrqRlaLArallrdapllllDEPtahLDaeteaevlealrelaegrtvllvaHr 516
                 +++++ +s ++  +    al+++ ++++ ge+++l+G+ GaGK+t +++l g+v+pt+G  +v g++++     + r+  +  +Q+ +l+++ t+a+ ++l+    s +  ++a e+++    +++l  g+  ++  r+  LSgGqr++l+L  all + + +llDEPta +D+++  +v e + +   +r++ll +H 
  MMETSP1137-20121227|6947_1 591 AVRAHRLSKTFgSDPPvHALNDLTFEMADGEVTGLLGQNGAGKTTAINILCGLVRPTSGYARVRGHDVRTHI-GTIRSFSGVCAQHDTLLDDlTLAQHVELYAGVKSVD-KRRAREQVEG--WLQQL--GMSEKLNTRADTLSGGQRRKLSLILALLGEPKFVLLDEPTAGMDPHSRRAVWEFVLSSKAERATLLTTHF 783
                 5677777777756666789***********************************************987665.4588889999***99997659*******99888777.5777777655..67888..799******************************************************************5 PP

  == domain 2    score: -2.2 bits;  conditional E-value: 4.8
   TIGR02857  151 lltlPlipiFmiLiGsaaqaa 171 
                  l  +Pl+ +F++Li   a a+
  MMETSP1137-20121227|6947_1 1155 LQIAPLVMLFVMLIVTLATAK 1175
                  556899999999987765544 PP

  == domain 3    score: 79.2 bits;  conditional E-value: 1e-24
   TIGR02857  336 palkevsltvepgelvalvGaSGaGKstllklllgfvepteGailvngaelaeldadswrkqiawvpQkPllfeg.tvaenirlarkdaseaevkealeragldelvkalpqgleteiGergagLSgGqrqRlaLArallrda.pllllDEPtahLDaeteaevlealrelaegrtvllvaHrlalae 521 
                   a++++ l+++ g+  al+G+ GaGK+t ++ll g ++p  G  +++g+ +++   ++  ++ ++ pQ   l e  t+++ + l  +   ++    al++a + ++ +  + gl  +  ++++ LSgG r++l+ A al   + +++ +DEPt  +D  t   + e++re+a++r+v+l +H    a 
  MMETSP1137-20121227|6947_1 1456 TAVDGLTLAIPNGTCFALLGPNGAGKTTAINLLTGELKPSAGDASIGGVSIHARL-SDVFQNTGFCPQLKGLWESlTLRQHLSLVLRLKGHT--GTALTAAIA-KVEE--EYGLREHAHKKAKLLSGGTRRKLSAAMALSCGNpSVVFVDEPTTGVDVGTRRFIWERIREAAKRRVVVLTTHYMDEAD 1637
                  6999*********************************************876665.5588999*****999997659999999766555444..344444333.3333..458999***********************776659*************************************876554 PP

>> TIGR03375  type_I_sec_LssB: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.6   0.0   6.3e-29   4.1e-27     480     688 ..     607     811 ..     590     818 .. 0.85
   2 ?   -0.1   0.1      0.68        44     181     204 ..     968     991 ..     967     994 .. 0.90
   3 ?   -3.5   0.1       7.4   4.8e+02     289     313 ..    1155    1179 ..    1150    1187 .. 0.79
   4 !   72.5   0.0   7.7e-23     5e-21     480     686 ..    1455    1658 ..    1451    1664 .. 0.88

  Alignments for each domain:
  == domain 1    score: 92.6 bits;  conditional E-value: 6.3e-29
   TIGR03375 480 kaaLknvslkikpGekvaiiGriGsGKstllklllglyepteGsvlldgvdirqidpadlrrnigyvpqdvtLfyG.tlrdNialgapaaedeellraaelaGvtefvkkhpkGldlqigerGesLSgGQrqavalaRallkdppillLDEPtsalDnsseekllerLkelladkTlvlvtHrtslLe.lvdriivldkGrivadGpkdev 688
                  +aL++++++++ Ge  +++G++G+GK+t  ++l+gl++pt+G   + g+d+r+ +  ++r+  g+ +q  tL+   tl + ++l a   +  +  ra     v+  ++    G+  +++ r + LSgGQr+ ++l  all +p+ +lLDEPt+ +D +s + + e + +  a++  +l+tH +   + l+  ++v+++G + a G+ +e+
  MMETSP1137-20121227|6947_1 607 VHALNDLTFEMADGEVTGLLGQNGAGKTTAINILCGLVRPTSGYARVRGHDVRT-HIGTIRSFSGVCAQHDTLLDDlTLAQHVELYAGVKS-VDKRRAR--EQVEGWLQ--QLGMSEKLNTRADTLSGGQRRKLSLILALLGEPKFVLLDEPTAGMDPHSRRAVWEFVLSSKAERATLLTTHFMDEADvLCSSLVVVSNGSLAASGSPSEL 811
                 689*************************************************86.8999*********99988864377777777655222.2222222..22344444..469999*****************************************************************987665489***************98776 PP

  == domain 2    score: -0.1 bits;  conditional E-value: 0.68
   TIGR03375 181 PnqaietLwvLaiGvalvlvfdlv 204
                 P q++ +L+vL++Gv+l++++ ++
  MMETSP1137-20121227|6947_1 968 PKQSVLSLLVLTAGVVLAFILGIL 991
                 899***************998766 PP

  == domain 3    score: -3.5 bits;  conditional E-value: 7.4
   TIGR03375  289 lvlvplvavplvllvglllqkplsk 313 
                  l + plv++ ++l+v+l+  k+l++
  MMETSP1137-20121227|6947_1 1155 LQIAPLVMLFVMLIVTLATAKRLAA 1179
                  6678999999999999999988875 PP

  == domain 4    score: 72.5 bits;  conditional E-value: 7.7e-23
   TIGR03375  480 kaaLknvslkikpGekvaiiGriGsGKstllklllglyepteGsvlldgvdirqidpadlrrnigyvpqdvtLfyG.tlrdNialgapaaedeellraaelaGvtefvkkhpkGldlqigerGesLSgGQrqavalaRal.lkdppillLDEPtsalDnsseekllerLkelladkTlvlvtHrtslL.elvdriivldkGrivadGpkd 686 
                   +a++ ++l i  G   a++G +G+GK+t  +ll+g ++p++G  ++ gv i+    +d+ +n g+ pq   L    tlr+ + l  +    +    +a +a v     ++  Gl    + + + LSgG r+ ++ a al   +p+++++DEPt+ +D  + + + er++e+++ + +vl+tH +     l++ri +++ Gr+ + G+ +
  MMETSP1137-20121227|6947_1 1455 VTAVDGLTLAIPNGTCFALLGPNGAGKTTAINLLTGELKPSAGDASIGGVSIHA-RLSDVFQNTGFCPQLKGLWESlTLRQHLSLVLRLKGHTGTALTAAIAKV-----EEEYGLREHAHKKAKLLSGGTRRKLSAAMALsCGNPSVVFVDEPTTGVDVGTRRFIWERIREAAKRRVVVLTTHYMDEAdALAQRIGIMSGGRLRVLGSPQ 1658
                  579999*********************************************975.7899***************8769***99988775554444444444434.....4578999999******************998468****************************************99755179***********99888765 PP

>> TIGR03258  PhnT: 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.9   0.1     7e-26   4.6e-24       7     235 ..     590     819 ..     584     830 .. 0.89
   2 !   79.7   0.2   6.9e-25   4.5e-23      20     243 ..    1454    1676 ..    1440    1710 .. 0.90

  Alignments for each domain:
  == domain 1    score: 82.9 bits;  conditional E-value: 7e-26
   TIGR03258   7 sGvvleslrvaygar...vvlddlsleieaGellallGksGsGkttllravaGfvkadGGrllvadrdl.thlppykrnlallvqnyalfphlkveenvafGlrarkqskaliaervadalklvqlsdaaarlpaqlsGGqqqrvalaralvvrpdvllldeplsaldaqlrasvveelkalhrelpeltvlyvthdrdealvladkillmkeGslialGetralydapadrf 235
                 + v+ + l+ ++g+      l+dl++e+  Ge+  llG+ G+Gktt + ++ G+v++  G   v ++d+ th+   +   ++  q  +l+  l++ + v +    +   k    e+v   l+ +++s+  +     lsGGq+++++l  al  +p+ +lldep + +d + r +v e + + +    e + l  th  dea vl   + ++ +Gsl+a G + +l  + a ++
  MMETSP1137-20121227|6947_1 590 AAVRAHRLSKTFGSDppvHALNDLTFEMADGEVTGLLGQNGAGKTTAINILCGLVRPTSGYARVRGHDVrTHIGTIRSFSGVCAQHDTLLDDLTLAQHVELYAGVKSVDKRRAREQVEGWLQQLGMSEKLNTRADTLSGGQRRKLSLILALLGEPKFVLLDEPTAGMDPHSRRAVWEFVLSSK---AERATLLTTHFMDEADVLCSSLVVVSNGSLAASGSPSELKAKYASGY 819
                 556666777777665322479***********************************************9899999999999*******************9999999999999*************************************************************999875444...34455678****************************99987766655 PP

  == domain 2    score: 79.7 bits;  conditional E-value: 6.9e-25
   TIGR03258   20 arvvlddlsleieaGellallGksGsGkttllravaGfvkadGGrllvadrdl.thlppykrnlallvqnyalfphlkveenvafGlrarkqskaliaervadalklvqlsdaaarlpaqlsGGqqqrvalaralvv.rpdvllldeplsaldaqlrasvveelkalhrelpeltvlyvthdrdealvladkillmkeGslialGetralydapadrfvaeylGaa 243 
                  a + +d l+l i  G  +allG+ G+Gktt + +++G +k++ G   +++  + + l    +n ++  q   l+  l++ + +++ lr +  + + ++  +a+     +l + a++  + lsGG +++++ a al   +p v+++dep + +d   r  + e ++   ++     v+  th  dea +la++i++m  G+l  lG ++ l      ++  e    a
  MMETSP1137-20121227|6947_1 1454 AVTAVDGLTLAIPNGTCFALLGPNGAGKTTAINLLTGELKPSAGDASIGGVSIhARLSDVFQNTGFCPQLKGLWESLTLRQHLSLVLRLKGHTGTALTAAIAKVEEEYGLREHAHKKAKLLSGGTRRKLSAAMALSCgNPSVVFVDEPTTGVDVGTRRFIWERIREAAKR---RVVVLTTHYMDEADALAQRIGIMSGGRLRVLGSPQHLKTVHGGGYRVELKAEA 1676
                  5678999*******************************************998346788899*************************************************************************8758*********************9998876655...578999******************************98877777766665555 PP

>> TIGR03873  F420-0_ABC_ATP: proposed F420-0 ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.5   0.5   1.7e-28   1.1e-26      14     224 ..     607     811 ..     591     827 .. 0.90
   2 !   72.7   1.9   8.7e-23   5.7e-21      13     226 ..    1454    1662 ..    1446    1665 .. 0.86

  Alignments for each domain:
  == domain 1    score: 91.5 bits;  conditional E-value: 1.7e-28
   TIGR03873  14 rlivddvdvtaPaGaltgllGPnGsGkstllrllaGllapdaGevdlagadlkalsrrararrvalveqdsdaevplsvrdvvalGriPhrslfaadsdedaevvdralarvelssladrdlstlsGGerqrvhlaralaqePklllldePtnhldvsaqlellalvrelaaegvtvvvalhdlnlaasvcdhvvvldgGrvvaaGppaev 224
                 +  ++d++ ++  G++tgllG nG+Gk+t +++l Gl++p+ G   + g+d+++     r+    +  q+ +   +l+  + v l    + ++ + d     e v+  l + ++s+  +   +tlsGG+r++  l  al  ePk++lldePt  +d +++ ++ ++v +  ae++t +++ h ++ a  +c  +vv+++G ++a+G+p+e+
  MMETSP1137-20121227|6947_1 607 VHALNDLTFEMADGEVTGLLGQNGAGKTTAINILCGLVRPTSGYARVRGHDVRTHIGTIRSFS-GVCAQHDTLLDDLTLAQHVEL----YAGVKSVDKRRAREQVEGWLQQLGMSEKLNTRADTLSGGQRRKLSLILALLGEPKFVLLDEPTAGMDPHSRRAVWEFVLSSKAERAT-LLTTHFMDEADVLCSSLVVVSNGSLAASGSPSEL 811
                 456789999************************************************999986.677888888889999999998....899999999999*************99888889*********************************************999777766.5678***************************986 PP

  == domain 2    score: 72.7 bits;  conditional E-value: 8.7e-23
   TIGR03873   13 grlivddvdvtaPaGaltgllGPnGsGkstllrllaGllapdaGevdlagadlkalsrrararrvalveqdsdaevplsvrdvvalGriPhrslfaadsdedaevvdralarvelssladrdlstlsGGerqrvhlarala.qePklllldePtnhldvsaqlellalvrelaaegvtvvvalhdlnlaasvcdhvvvldgGrvvaaGppaevlt 226 
                  +++ vd++++  P+G+  +llGPnG+Gk+t ++ll+G l+p+aG+ +++g+ ++a       ++     q +    +l+ r+ + l  +  ++  ++     +++++++  + +l + a+++ + lsGG r++   a al+  +P+++++dePt  +dv ++  + + +re  a++  vv++ h ++ a ++++++ +++gGr+   G+p+++ t
  MMETSP1137-20121227|6947_1 1454 AVTAVDGLTLAIPNGTCFALLGPNGAGKTTAINLLTGELKPSAGDASIGGVSIHARLSD-VFQNTGFCPQLKGLWESLTLRQHLSLV-LRLKGHTGTA---LTAAIAKVEEEYGLREHAHKKAKLLSGGTRRKLSAAMALScGNPSVVFVDEPTTGVDVGTRRFIWERIREA-AKRRVVVLTTHYMDEADALAQRIGIMSGGRLRVLGSPQHLKT 1662
                  56789************************************************985544.456678889999999999999988774.2233333333...3556677778899**************************7369***************************9.6666788899**************************998755 PP

>> TIGR00960  3a0501s02: type II secretory pathway family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.6   0.0   3.8e-28   2.5e-26      16     214 ..     607     800 ..     592     802 .. 0.88
   2 !   65.9   0.0   1.4e-20     9e-19      17     216 .]    1456    1651 ..    1449    1651 .. 0.93

  Alignments for each domain:
  == domain 1    score: 90.6 bits;  conditional E-value: 3.8e-28
   TIGR00960  16 elaldnvtvkiekGelvflvGhsGaGkstllklilgiekpsaGkirvsgqdltklrdrevpflrrqiGivfqdfkllsdrtvydnvalalriiGvkgreieervsaalekvGlkdkakalPvqlsgGeqqrvaiaravvnkPallladePtgnlddelsrdilelleevnraGttvlvathdenlveskrkrvltlskG 214
                   al+++t+++  Ge++ l G+ GaGk+t +++++g  +p++G  rv g+d+      +++ +r   G+  q   ll d t  + v l   +  v  r ++e+v+  l+++G+++k ++  ++lsgG+++++++  a++ +P+ +l dePt+ +d++  r + e++ + +    t l++th  +  +     ++++s+G
  MMETSP1137-20121227|6947_1 607 VHALNDLTFEMADGEVTGLLGQNGAGKTTAINILCGLVRPTSGYARVRGHDVR----THIGTIRSFSGVCAQHDTLLDDLTLAQHVELYAGVKSVDKRRAREQVEGWLQQLGMSEKLNTRADTLSGGQRRKLSLILALLGEPKFVLLDEPTAGMDPHSRRAVWEFVLSSKAERAT-LLTTHFMDEADVLCSSLVVVSNG 800
                 359************************************************97....58**************************************************************************************************999999987665555444.56777766666666666666665 PP

  == domain 2    score: 65.9 bits;  conditional E-value: 1.4e-20
   TIGR00960   17 laldnvtvkiekGelvflvGhsGaGkstllklilgiekpsaGkirvsgqdltklrdrevpflrrqiGivfqdfkllsdrtvydnvalalriiGvkgreieervsaalekvGlkdkakalPvqlsgGeqqrvaiarav.vnkPallladePtgnlddelsrdilelleevnraGttvlvathdenlveskrkrvltlskGkl 216 
                   a+d++t+ i++G    l G+ GaGk+t ++l++g  kpsaG+  + g  +      +++ + ++ G   q   l +  t  + + l lr+ G +g ++   + ++ e+ Gl+++a++  + lsgG +++++ a a+   +P++++ dePt+ +d  + r i e ++e  ++ + v+++th  +  +   +r+  +s G+l
  MMETSP1137-20121227|6947_1 1456 TAVDGLTLAIPNGTCFALLGPNGAGKTTAINLLTGELKPSAGDASIGGVSIH----ARLSDVFQNTGFCPQLKGLWESLTLRQHLSLVLRLKGHTGTALTAAIAKVEEEYGLREHAHKKAKLLSGGTRRKLSAAMALsCGNPSVVFVDEPTTGVDVGTRRFIWERIREAAKRRV-VVLTTHYMDEADALAQRIGIMSGGRL 1651
                  599*********************************************9996....45666789************************************************************************94579************************999998866.67799**9999999999999999887 PP

>> TIGR02314  ABC_MetN: D-methionine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.7   0.0   7.1e-29   4.6e-27       7     230 ..     597     813 ..     591     819 .. 0.93
   2 !   61.0   0.0   3.2e-19   2.1e-17      14     219 ..    1451    1651 ..    1440    1660 .. 0.94

  Alignments for each domain:
  == domain 1    score: 92.7 bits;  conditional E-value: 7.1e-29
   TIGR02314   7 iskvfdqgdkkikaldnvslfvpkgqifgvigasgagkstlircvnllekptsgavivdgkdlttlsnaelvkarrqigmifqhfnllssrtvfgnvalplelentpkekikrkvtellalvglsdkkdsypsnlsggqkqrvaiaralasepkvllcdeatsaldpattqsilellkeinrrlgltillithemdvvkricdevavidkgeliekgtvseifs 230
                 +sk f  +d  ++al+++++ + +g++ g++g  gagk+t i  +  l +ptsg   v g+d+ t    ++ + r   g+  qh  ll   t+ + v l   +++  k + +++v+  l  +g+s+k ++    lsggq++++++  al  epk +l de t+ +dp + +++ e++     + + + ll th md    +c ++ v+++g l   g+ se+ +
  MMETSP1137-20121227|6947_1 597 LSKTFG-SDPPVHALNDLTFEMADGEVTGLLGQNGAGKTTAINILCGLVRPTSGYARVRGHDVRT----HIGTIRSFSGVCAQHDTLLDDLTLAQHVELYAGVKSVDKRRAREQVEGWLQQLGMSEKLNTRADTLSGGQRRKLSLILALLGEPKFVLLDEPTAGMDPHSRRAVWEFVL--SSKAERATLLTTHFMDEADVLCSSLVVVSNGSLAASGSPSELKA 813
                 566664.67789**************************************************976....67889999**************************************************************************************************985..556677889**************************999999765 PP

  == domain 2    score: 61.0 bits;  conditional E-value: 3.2e-19
   TIGR02314   14 gdkkikaldnvslfvpkgqifgvigasgagkstlircvnllekptsgavivdgkdlttlsnaelvkarrqigmifqhfnllssrtvfgnvalplelentpkekikrkvtellalvglsdkkdsypsnlsggqkqrvaiarala.sepkvllcdeatsaldpattqsilellkeinrrlgltillithemdvvkricdevavidkgel 219 
                  g+k ++a+d ++l +p+g+ f ++g  gagk+t i  +    kp+ g+  + g+ +    +a l +  ++ g+  q   l  s t+ + ++l l l++++   +   ++++    gl ++ +     lsgg +++++ a al+  +p v++ de t+ +d  t + i e ++e  +r    ++l th md    + +++ ++++g+l
  MMETSP1137-20121227|6947_1 1451 GQKAVTAVDGLTLAIPNGTCFALLGPNGAGKTTAINLLTGELKPSAGDASIGGVSI----HARLSDVFQNTGFCPQLKGLWESLTLRQHLSLVLRLKGHTGTALTAAIAKVEEEYGLREHAHKKAKLLSGGTRRKLSAAMALScGNPSVVFVDEPTTGVDVGTRRFIWERIREAAKRR--VVVLTTHYMDEADALAQRIGIMSGGRL 1651
                  7899******************************99999999***********997....578888999*************************************************************************7369***************************98875..57899********************98 PP

>> TIGR02211  LolD_lipo_ex: lipoprotein releasing system, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.7   0.0     3e-28     2e-26       3     218 ..     593     801 ..     591     804 .. 0.89
   2 !   62.0   0.0   1.9e-19   1.2e-17      14     215 ..    1451    1646 ..    1435    1652 .. 0.88

  Alignments for each domain:
  == domain 1    score: 90.7 bits;  conditional E-value: 3e-28
   TIGR02211   3 kcenltksykegkleievlkgvsleiekgelvaivGssGsGkstllhllggldkptsGevllkGkelsklssneraklrnkklGfiyqfhhlladftalenvamPlliskkskkeakerakellekvglekrinkkpselsGGerqrvaiaralvnkPklvladePtgnldkktakkifelllelnkekntallvvthdlelakkldrvl.elkdgk 218
                 ++++l+k++ + +  ++ l+++ +e+ +ge+++++G+ G+Gk+t + +l gl +ptsG   ++G+++++    +++++r  + G   q   ll d+t  + v + + +++ +k+ a+e+ +  l+++g+++++n ++  lsGG+r++ ++  al+ +Pk vl dePt+ +d ++ ++++e++l    + + a l+ th ++ a+ l   l  +++g+
  MMETSP1137-20121227|6947_1 593 RAHRLSKTFGS-DPPVHALNDLTFEMADGEVTGLLGQNGAGKTTAINILCGLVRPTSGYARVRGHDVRT----HIGTIRSFS-GVCAQHDTLLDDLTLAQHVELYAGVKSVDKRRAREQVEGWLQQLGMSEKLNTRADTLSGGQRRKLSLILALLGEPKFVLLDEPTAGMDPHSRRAVWEFVLSS--KAERATLLTTHFMDEADVLCSSLvVVSNGS 801
                 66778888865.457899************************************************975....789999765.99***********************************************************************************************99665..555667889998877776644441455665 PP

  == domain 2    score: 62.0 bits;  conditional E-value: 1.9e-19
   TIGR02211   14 gkleievlkgvsleiekgelvaivGssGsGkstllhllggldkptsGevllkGkelsklssneraklrnkklGfiyqfhhlladftalenvamPlliskkskkeakerakellekvglekrinkkpselsGGerqrvaiaral.vnkPklvladePtgnldkktakkifelllelnkekntallvvthdlelakkldrvlelk 215 
                  g+++++ ++g+ l i +g   a++G  G+Gk+t + ll+g  kp++G+  + G ++++  s+    +  ++ Gf  q+  l   +t  + +++ l ++ +  +    + +++ e+ gl ++++kk+  lsGG r++ + a al   +P++v+ dePt+ +d  t + i+e ++e  k  +  +++ th ++ a+ l +++ + 
  MMETSP1137-20121227|6947_1 1451 GQKAVTAVDGLTLAIPNGTCFALLGPNGAGKTTAINLLTGELKPSAGDASIGGVSIHARLSD---VF--QNTGFCPQLKGLWESLTLRQHLSLVLRLKGHTGTALTAAIAKVEEEYGLREHAHKKAKLLSGGTRRKLSAAMALsCGNPSVVFVDEPTTGVDVGTRRFIWERIREAAK--RRVVVLTTHYMDEADALAQRIGIM 1646
                  67889999***********************************************9864333...23..457*********************999999999999999999*******************************94579*************************99765..556788999988888877776554 PP

>> TIGR03608  L_ocin_972_ABC: putative bacteriocin export ABC transporter, lactococcin 972 group
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.0   0.0   3.7e-27   2.4e-25       8     192 ..     601     782 ..     595     793 .. 0.91
   2 !   64.5   0.0   2.9e-20   1.9e-18      12     199 ..    1456    1638 ..    1450    1645 .. 0.90

  Alignments for each domain:
  == domain 1    score: 87.0 bits;  conditional E-value: 3.7e-27
   TIGR03608   8 fkdk...eilkklslkiekGelvaivGesGsGKstlLnilgllekkdsgkvilegkekaklkskkaskllreklgylFqnfaLlenetveenlelalklkkkskkekekkkkevlekvglekklkkkiyelsgGekqRvalarillkeselilADEPtgsLDkknreevlellkelkeegktiiivtH 192
                 f++    + l++l +++ +Ge++ ++G+ G+GK+t +nil  l ++ sg   + g++      +++   +r+  g   q  +Ll++ t+ + +el   +k   k+  +++++  l+++g+++kl+++  +lsgG++ +++l+ +ll e++ +l DEPt+ +D+++r +v e++ + k e  t ++ tH
  MMETSP1137-20121227|6947_1 601 FGSDppvHALNDLTFEMADGEVTGLLGQNGAGKTTAINILCGLVRPTSGYARVRGHD-----VRTHIGTIRSFSGVCAQHDTLLDDLTLAQHVELYAGVKSVDKRRAREQVEGWLQQLGMSEKLNTRADTLSGGQRRKLSLILALLGEPKFVLLDEPTAGMDPHSRRAVWEFVLSSKAERAT-LLTTH 782
                 5554444789**********************************************9.....456677889999*********************9999999*********************************************************************99998877665.55677 PP

  == domain 2    score: 64.5 bits;  conditional E-value: 2.9e-20
   TIGR03608   12 eilkklslkiekGelvaivGesGsGKstlLnilgllekkdsgkvilegkekaklkskkaskllreklgylFqnfaLlenetveenlelalklkkkskkekekkkkevlekvglekklkkkiyelsgGekqRvalaril.lkeselilADEPtgsLDkknreevlellkelkeegktiiivtHdpevaek 199 
                  + ++ l l i +G + a++G  G+GK+t +n+l+   k++ g+  + g +   ++ + +  ++  + g+  q  +L e+ t+++ l+l l lk ++ +  + ++ +v e+ gl+++ +kk   lsgG + +++ a +l   ++++++ DEPt+ +D  +r  + e ++e ++  +++++ tH +  a++
  MMETSP1137-20121227|6947_1 1456 TAVDGLTLAIPNGTCFALLGPNGAGKTTAINLLTGELKPSAGDASIGGVS---IHARLSDVFQ--NTGFCPQLKGLWESLTLRQHLSLVLRLKGHTGTALTAAIAKVEEEYGLREHAHKKAKLLSGGTRRKLSAAMALsCGNPSVVFVDEPTTGVDVGTRRFIWERIREAAK-RRVVVLTTHYMDEADA 1638
                  5678899******************************************9...6666666664..56*****************************************************************9999884679*************************99876.589999***8766655 PP

>> TIGR02868  CydC: thiol reductant ABC exporter, CydC subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.7   0.5   3.6e-26   2.4e-24     332     528 ..     589     782 ..     562     784 .. 0.85
   2 ?   -0.6   0.2       1.3        82     286     329 ..     821     864 ..     817     883 .. 0.83
   3 !   83.9   2.2   3.1e-26     2e-24     259     528 ..    1363    1631 ..    1344    1633 .. 0.86

  Alignments for each domain:
  == domain 1    score: 83.7 bits;  conditional E-value: 3.6e-26
   TIGR02868 332 kptlelrdlsvsypgaee..vlkgvsldlepGervavvGasGaGKstLlallaglldplkGevtldgvsvaslsesevrrvvsvlaqdaHlFdttvreNlrlarpda...tdeellaaLervgLadwlraLpdGldtklgeggarlSGGerqRlalARaLladapvllLDEPtehLDaeteeelledLlaaeegrtvvlvth 528
                  + +++++ls  +  +++  +l++++++++ Ge + ++G+ GaGK+t +++l gl+ p +G   + g +v +     +r    v+aq+      t+++ l la+        + + +  +r + + wl++   G++ kl++++ +lSGG+r++l l  aLl + + +lLDEPt+++D++ ++++ e +l+ +++r+++l th
  MMETSP1137-20121227|6947_1 589 GAAVRAHRLSKTFGSDPPvhALNDLTFEMADGEVTGLLGQNGAGKTTAINILCGLVRPTSGYARVRGHDVRTH-IGTIRSFSGVCAQHD-----TLLDDLTLAQHVElyaGVKSVDKRRAREQVEGWLQQ--LGMSEKLNTRADTLSGGQRRKLSLILALLGEPKFVLLDEPTAGMDPHSRRAVWEFVLSSKAERATLLTTH 782
                 5678899999999999987889*********************************************999885.677**********75.....55555555554321113334444455667799****..6********************************************************************9 PP

  == domain 2    score: -0.6 bits;  conditional E-value: 1.3
   TIGR02868 286 alaalpaAaqqltrvraaaeRieevldakvevaeasapaaeaaa 329
                  +aal+ A+ +  + +aaa+R+  +++   ++a+ +++ ae+a 
  MMETSP1137-20121227|6947_1 821 LVAALSPAVGEPAHTQAAAARLLTLAQSYAPEATLEHASAEEAR 864
                 589*********************99999777777777666554 PP

  == domain 3    score: 83.9 bits;  conditional E-value: 3.1e-26
   TIGR02868  259 gveavadgrlapvalAvlvL.lpLaafealaalpaAaqqltrvraaaeRieevldakvevaeasapaaeaaasekptlelrdlsvsypgaee..vlkgvsldlepGervavvGasGaGKstLlallaglldplkGevtldgvsvaslsesevrrvvsvlaqdaHlFdt.tvreNlrla..rpdatdeellaaLervgLadwlraLpdGldtklgeggarlSGGerqRlalARaLladap.vllLDEPtehLDaeteeelledLlaaeegrtvvlvth 528 
                  +++a+ + +++  +lA+l   l L  + a aa+++  + l+     a+ +++  +a+  + +a  p ++aa++  + l+      +  g+++  +++g++l +++G   a++G+ GaGK+t ++ll+g l+p++G+ ++ gvs+++ + s+v +   +++q   l+++ t+r+ l l    +  t+  l+aa+++v+ +        Gl  + ++++++lSGG r++l  A aL    p v+ +DEPt ++D++t++ + e +++a ++r+vvl th
  MMETSP1137-20121227|6947_1 1363 AGSAMIAATVTSSTLALLLYaLELRKYTARAAVSTHSDGLRVTDVDADAVDADVKAERARVAAMRPDDAAAVVRMVGLRKDFYPRRCGGQKAvtAVDGLTLAIPNGTCFALLGPNGAGKTTAINLLTGELKPSAGDASIGGVSIHA-RLSDVFQNTGFCPQLKGLWESlTLRQHLSLVlrLKGHTGTALTAAIAKVEEE-------YGLREHAHKKAKLLSGGTRRKLSAAMALSCGNPsVVFVDEPTTGVDVGTRRFIWERIREAAKRRVVVLTTH 1631
                  5678889999999999876536788888999999999999998888999987777776788888888888888899998877777777777656899***********************************************99.6899***************9879***98654115777999999999998654.......5666699*********************865543999********************************** PP

>> TIGR01166  cbiO: cobalt ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.5   0.0     7e-25   4.6e-23       5     185 ..     607     782 ..     603     787 .. 0.88
   2 !   69.5   0.0   8.2e-22   5.3e-20       5     188 ..    1455    1634 ..    1452    1636 .. 0.88

  Alignments for each domain:
  == domain 1    score: 79.5 bits;  conditional E-value: 7e-25
   TIGR01166   5 aevlkglnlavergevlallGanGaGkstlllhlnGllrPksGkvlldGeeldysrkgllelrkkvalvlqdpddqlfaadvdedvafgplnlGlseaeverrvrealaavdisgleerpthllsgGekkrvaiagavalrpdvllldePtagldpaGaeqlleilrklreeGktvvisth 185
                 +++l++l +++  gev++llG+nGaGk+t ++ l Gl+rP+sG   + G+++      + ++r   + v  + d  l   ++ + v +      +++ +++++v+  l+++++s+  +  +++lsgG+++++++  a+  +p+++lldePtag+dp+ ++ + e +   ++e  t+ ++th
  MMETSP1137-20121227|6947_1 607 VHALNDLTFEMADGEVTGLLGQNGAGKTTAINILCGLVRPTSGYARVRGHDVR---THIGTIRS-FSGVCAQHDTLLDDLTLAQHVELYAGVKSVDKRRAREQVEGWLQQLGMSEKLNTRADTLSGGQRRKLSLILALLGEPKFVLLDEPTAGMDPHSRRAVWEFVLSSKAERATL-LTTH 782
                 578**********************************************9984...45555555.55566667778888899999999988889999******************99999****************************************9999988877776664.4566 PP

  == domain 2    score: 69.5 bits;  conditional E-value: 8.2e-22
   TIGR01166    5 aevlkglnlavergevlallGanGaGkstlllhlnGllrPksGkvlldGeeldysrkgllelrkkvalvlqdpddqlf.aadvdedvafgplnlGlseaeverrvrealaavdisgleerpthllsgGekkrvaiagaval.rpdvllldePtagldpaGaeqlleilrklreeGktvvisthdvd 188 
                  + +++gl la+ +g+  allG+nGaGk+t ++ l+G l+P +G   ++G +++     l ++ ++ ++  q   + l+ + ++ + +++ ++  G ++  +++ + +  +  ++ + +++ ++llsgG +++++ a a++  +p v+++dePt+g+d   ++ + e +r+  ++ + vv++th +d
  MMETSP1137-20121227|6947_1 1455 VTAVDGLTLAIPNGTCFALLGPNGAGKTTAINLLTGELKPSAGDASIGGVSIHA---RLSDVFQNTGFCPQL--KGLWeSLTLRQHLSLVLRLKGHTGTALTAAIAKVEEEYGLREHAHKKAKLLSGGTRRKLSAAMALSCgNPSVVFVDEPTTGVDVGTRRFIWERIREA-AKRRVVVLTTHYMD 1634
                  67899*********************************************9964...466666776666554..334416699*******************************************************98658**************99888888888875.556789999*9876 PP

>> TIGR01277  thiQ: thiamine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.9   0.0   4.7e-27   3.1e-25      18     209 ..     614     804 ..     607     807 .. 0.90
   2 !   62.0   0.0   1.9e-19   1.2e-17      18     211 ..    1462    1655 ..    1456    1657 .. 0.93

  Alignments for each domain:
  == domain 1    score: 86.9 bits;  conditional E-value: 4.7e-27
   TIGR01277  18 dlsveaGervailGesGaGkstllnliaGflepasGeikvndkdhtrsapyerpvsml.fqennlfahltvrqnigl..GlkpglklnavqkekvedvarqvGiadylerlpeelsGGqrqrvalarclvrekpillldepfsaldpklreemlalvkkladekkltlllvthslsdaaaiasqvvvvedGkikv 209
                  +++++Ge   +lG+ GaGk+t +n++ G++ p+sG  +v ++d+ +     r +s +  q + l+  lt++q + l  G+k   k  a  +e+ve   +q+G+++ l+   + lsGGqr++++l   l+ e   +lldep + +dp+ r+ +  +v  +  + +++ ll th +++a    s  vvv++G ++ 
  MMETSP1137-20121227|6947_1 614 TFEMADGEVTGLLGQNGAGKTTAINILCGLVRPTSGYARVRGHDVRTHIGTIRSFSGVcAQHDTLLDDLTLAQHVELyaGVKSVDKRRA--REQVEGWLQQLGMSEKLNTRADTLSGGQRRKLSLILALLGEPKFVLLDEPTAGMDPHSRRAVWEFVLSS--KAERATLLTTHFMDEADVLCSSLVVVSNGSLAA 804
                 456789*************************************************965168889*********9987557777777665..688*************************************************************99655..556677899********************9875 PP

  == domain 2    score: 62.0 bits;  conditional E-value: 1.9e-19
   TIGR01277   18 dlsveaGervailGesGaGkstllnliaGflepasGeikvndkd.htrsapyerpvsmlfqennlfahltvrqniglGlkpglklnavqkekvedvarqvGiadylerlpeelsGGqrqrvalarclvrekp.illldepfsaldpklreemlalvkkladekkltlllvthslsdaaaiasqvvvvedGkikvls 211 
                   l++ +G   a+lG+ GaGk+t +nl++G l+p  G+  + +++ h r++   +      q + l+  lt+rq ++l l+      +     + +v ++ G+ ++ ++  + lsGG r++++ a  l   +p ++++dep + +d   r+ +   +++ a+  ++ ++l th +++a a a+++ +++ G+++vl+
  MMETSP1137-20121227|6947_1 1462 TLAIPNGTCFALLGPNGAGKTTAINLLTGELKPSAGDASIGGVSiHARLSDVFQNTGFCPQLKGLWESLTLRQHLSLVLRLKGHTGTALTAAIAKVEEEYGLREHAHKKAKLLSGGTRRKLSAAMALSCGNPsVVFVDEPTTGVDVGTRRFIWERIREAAK--RRVVVLTTHYMDEADALAQRIGIMSGGRLRVLG 1655
                  588999************************************98578999999999***********************9877777777889***********************************9999956789*******************99875..56899***********************99875 PP

>> TIGR02315  ABC_phnC: phosphonate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.7   0.0   4.6e-30     3e-28       3     236 ..     593     814 ..     591     818 .. 0.89
   2 !   49.3   0.0   1.3e-15   8.7e-14      15     233 ..    1455    1660 ..    1447    1664 .. 0.84
   3 ?   -1.7   0.0       5.1   3.3e+02      80     129 ..    1682    1731 ..    1671    1745 .. 0.86

  Alignments for each domain:
  == domain 1    score: 96.7 bits;  conditional E-value: 4.6e-30
   TIGR02315   3 evenlskvypng..kqalknvnleikkGelvaviGlsGaGkstllrsinrlveissgsillegkevtklkkkelrklrkkigmifqeynlierltvlenvLsgrlgakstlksllglfseedkekAlelLervglaelaakradqLsGGqqqRvaiaRalaqqpklilaDEPiasLDpksskqvmdllkrinkekgitvivnlHqvdlakkyadrivglkageivfdgasseldde 236
                 + ++lsk+++++   +al+++ +e+  Ge+++++G+ GaGk+t +  + +lv+++sg   ++g++v+     ++ ++r+  g+  q+  l++ lt  + v          +ks+    +++ +e+    L+++g++e+ ++rad+LsGGq+ ++++  al+ +pk +l DEP+a +Dp+s + v + +   + + + +++++ H +d a   ++ +v + +g++   g++sel+++
  MMETSP1137-20121227|6947_1 593 RAHRLSKTFGSDppVHALNDLTFEMADGEVTGLLGQNGAGKTTAINILCGLVRPTSGYARVRGHDVR----THIGTIRSFSGVCAQHDTLLDDLTLAQHV-----ELYAGVKSVD---KRRAREQVEGWLQQLGMSEKLNTRADTLSGGQRRKLSLILALLGEPKFVLLDEPTAGMDPHSRRAVWEFVL--SSKAERATLLTTHFMDEADVLCSSLVVVSNGSLAASGSPSELKAK 814
                 67899****99744699*************************************************8....68999****************99976655.....4444444333...455566667799********************************************************985..6777788999*******************************9876 PP

  == domain 2    score: 49.3 bits;  conditional E-value: 1.3e-15
   TIGR02315   15 kqalknvnleikkGelvaviGlsGaGkstllrsinrlveissgsillegkevtklkkkelrklrkkigmifqeynlierltvlenvLsgrlgakstlksllglfseedkekAlelL.ervglaelaakradqLsGGqqqRvaiaRal.aqqpklilaDEPiasLDpksskqvmdllkrinkekgitvivnlHqvdlakkyadrivglkageivfdgassel 233 
                   +a++ + l+i +G   a++G+ GaGk+t +  + +  ++s g+  + g +++           ++++ +fq+     +l+ l   L+ r   +  l+  l+ ++ +  + A++ + e+ gl e+a+k+a+ LsGG + +++ a al + +p+++++DEP++ +D  + + + + +++ +k++   v+++ H +d a + a+ri  +  g++   g++++l
  MMETSP1137-20121227|6947_1 1455 VTAVDGLTLAIPNGTCFALLGPNGAGKTTAINLLTGELKPSAGDASIGGVSIH-----------ARLSDVFQNTGFCPQLKGLWESLTLRQHLSLVLR--LKGHTGTALTAAIAKVeEEYGLREHAHKKAKLLSGGTRRKLSAAMALsCGNPSVVFVDEPTTGVDVGTRRFIWERIREAAKRR--VVVLTTHYMDEADALAQRIGIMSGGRLRVLGSPQHL 1660
                  56788889************************************999999887...........5666778888888888888777776655555555..55566666666665551689***************************5689**************************998765..78999*************988888888777777766 PP

  == domain 3    score: -1.7 bits;  conditional E-value: 5.1
   TIGR02315   80 kigmifqeynlierltvlenvLsgrlgakstlksllglfseedkekAlel 129 
                   +++++ ++ +++r +  +  L+  +g+   l  ++  f+e++ +  l++
  MMETSP1137-20121227|6947_1 1682 LTALVMAHFTNVKRADSQRGTLVFDVGKGFSLSAVFAAFEEAKMTLGLQT 1731
                  578999*********************************99988877765 PP

>> TIGR01189  ccmA: heme ABC exporter, ATP-binding protein CcmA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.6   0.1   6.5e-24   4.2e-22      15     186 ..     609     783 ..     603     790 .. 0.89
   2 !   70.3   0.1   5.7e-22   3.7e-20      14     188 ..    1456    1634 ..    1450    1645 .. 0.87

  Alignments for each domain:
  == domain 1    score: 76.6 bits;  conditional E-value: 6.5e-24
   TIGR01189  15 lleglsfelaaGealvveGpnGiGKttLLRilaGLlkpesGevelndkelaeqrdelaeellylgHldglKaeLsalEnLkfyaallq....seqktveealekvgLsgledlpvaqLsAGqkrRlalarLllskaplWiLDEPttalDkegvellaellaa.HlargGivllathq 186
                  l++l+fe+a Ge+  + G+nG+GKtt + il GL++p+sG  ++ ++++ ++  + +  +   + +d+l ++L+ +  ++ ya + +     ++++ve  l+++g+s+  ++ + +Ls Gq+r+l+l   ll + +  +LDEPt+ +D ++ + + e + +  ++r  ++ll+th 
  MMETSP1137-20121227|6947_1 609 ALNDLTFEMADGEVTGLLGQNGAGKTTAINILCGLVRPTSGYARVRGHDVRTHIGTIRSFSGVCAQHDTLLDDLTLAQHVELYAGVKSvdkrRAREQVEGWLQQLGMSEKLNTRADTLSGGQRRKLSLILALLGEPKFVLLDEPTAGMDPHSRRAVWEFVLSsKAER--ATLLTTHF 783
                 5789************************************************999998888899999****************998874433444489999***************************************************887776655404444..67888885 PP

  == domain 2    score: 70.3 bits;  conditional E-value: 5.7e-22
   TIGR01189   14 vlleglsfelaaGealvveGpnGiGKttLLRilaGLlkpesGevelndkelaeqrdelaeellylgHldglKaeLsalEnLkfyaallqseqktveealekv....gLsgledlpvaqLsAGqkrRlalar.LllskaplWiLDEPttalDkegvellaellaaHlargGivllathqdl 188 
                  + + gl++ +  G + ++ GpnG+GKtt + +l+G lkp++G  ++ + +++   + + +++ +   l+gl ++L+ +  L+   +l +++ +++++a++kv    gL+++++  ++ Ls G +r+l+ a  L   +  +  +DEPtt +D+ + + + e++++ ++r  +v+l+th   
  MMETSP1137-20121227|6947_1 1456 TAVDGLTLAIPNGTCFALLGPNGAGKTTAINLLTGELKPSAGDASIGGVSIHARLSDVFQNTGFCPQLKGLWESLTLRQHLSLVLRLKGHTGTALTAAIAKVeeeyGLREHAHKKAKLLSGGTRRKLSAAMaLSCGNPSVVFVDEPTTGVDVGTRRFIWERIREAAKRR-VVVLTTHYMD 1634
                  5678999******************************************9999988999***************************999777666666665533338********************999725566777999*********************987776.7888888654 PP

>> TIGR00955  3a01204: pigment precursor permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.9   0.0   8.7e-24   5.7e-22      36     255 ..     605     812 ..     587     833 .. 0.85
   2 ?    3.0   0.0       0.1       6.6     333     383 ..     943     996 ..     908    1003 .. 0.76
   3 !   61.9   0.0   1.5e-19   9.8e-18      47     254 ..    1464    1660 ..    1433    1672 .. 0.84

  Alignments for each domain:
  == domain 1    score: 75.9 bits;  conditional E-value: 8.7e-24
   TIGR00955  36 pekellknvsGvaksGellAvlGsSGaGKtTLlnalafrsekglkvsgdvllnGekveak..emraisayvqqddlfiptltvrehLmfsahlrlkrrltkkekrerveevleelgLrkcadtrigvpgrvkglSgGerkRlalaselltdPilLfcDEPTsGLDsfsaasvvkvLkklaqkgktviltiHQPsselfelfdkiillaeGrvvylGspeeav 255
                 p  + l++ + ++  Ge+  +lG  GaGKtT +n+l    +  + +     + G+ v ++  ++r  s+   q+d ++  lt  +h+ + a ++  +   k++ re+ve  l++lg+++  +tr        +lSgG+r++l+l   ll +P+++++DEPT+G+D  s   v + + +   ++ t ++t     +++      ++++++G  + +Gsp+e+ 
  MMETSP1137-20121227|6947_1 605 PPVHALNDLTFEMADGEVTGLLGQNGAGKTTAINILCGLVRPTSGY---ARVRGHDVRTHigTIRSFSGVCAQHDTLLDDLTLAQHVELYAGVKSVD---KRRAREQVEGWLQQLGMSEKLNTRAD------TLSGGQRRKLSLILALLGEPKFVLLDEPTAGMDPHSRRAVWEFVLSSKAERATLLTTHFMDEADVL--CSSLVVVSNGSLAASGSPSELK 812
                 56788999*****************************999988777...458888776542279999999**********************99655...89999******************999......7**************************************999776655556656555555566664..4688999999999999998875 PP

  == domain 2    score: 3.0 bits;  conditional E-value: 0.1
   TIGR00955 333 ikykasfltqflvllkRsllsvlrdplllk...vrllqvivvavligliylgqe 383
                 ++ k +  +q+++++ + +++  ++p++     + l++ +v+a+++g+++   +
  MMETSP1137-20121227|6947_1 943 THPKVGAGAQVRIVMHKLWMEAAAEPKQSVlslLVLTAGVVLAFILGILFNSGS 996
                 445566789************99988765500055677899********98755 PP

  == domain 3    score: 61.9 bits;  conditional E-value: 1.5e-19
   TIGR00955   47 vaksGellAvlGsSGaGKtTLlnalafrsekglkvsgdvllnGekveak..emraisayvqqddlfiptltvrehLmfsahlrlkrrltkkekrerveevleelgLrkcadtrigvpgrvkglSgGerkRlalasel.ltdPilLfcDEPTsGLDsfsaasvvkvLkklaqkgktviltiHQPsselfelfdkiillaeGrvvylGspeea 254 
                  ++ +G+  A+lG+ GaGKtT +n l+   +      gd  + G  + a+   + ++ ++  q   + ++lt r+hL +   lrlk + t +   +++ +v ee gLr+ a+ +       k lSgG r++l+ a  l   +P+++f+DEPT+G D  +   + + +++ a k+++v+lt H    e   l ++i +++ Gr   lGsp+++
  MMETSP1137-20121227|6947_1 1464 AIPNGTCFALLGPNGAGKTTAINLLTGELKPSA---GDASIGGVSIHARlsDVFQNTGFCPQLKGLWESLTLRQHLSLV--LRLKGH-TGTALTAAIAKVEEEYGLREHAHKKA------KLLSGGTRRKLSAAMALsCGNPSVVFVDEPTTGVDVGTRRFIWERIREAA-KRRVVVLTTHY-MDEADALAQRIGIMSGGRLRVLGSPQHL 1660
                  56789*********************9887754...456799998886511567899*******************987..666664.45677889999999******999764......58************998468**************************9966.56678899997.456778999****************997 PP

>> TIGR03771  anch_rpt_ABC: anchored repeat-type ABC transporter, ATP-binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.8   0.1   6.2e-24     4e-22       2     201 ..     616     813 ..     615     826 .. 0.81
   2 !   61.0   0.1   4.4e-19   2.9e-17       3     200 ..    1465    1661 ..    1463    1669 .. 0.79

  Alignments for each domain:
  == domain 1    score: 76.8 bits;  conditional E-value: 6.2e-24
   TIGR03771   2 svdkGellgllGpnGaGkttllrailglikvakGsvkvagkssrkgrreiGyvpqrhefawdfpidveqtvlsGragli.GllrrpkkadfaavadalervklteladrpvGelsGGqrqrvlvaralavkpslllldepftGldlpsqellvelfeelagegtailmtthdlaeavatcdrvv.llngrvvadgapdqlqd 201
                 ++  Ge+ gllG nGaGktt +  + gl++++ G  +v g+   + r++iG +      + ++   + +  l+    l  G+    k+     v+  l++  ++e  +     lsGGqr+++ +  al  +p+ +lldep +G+d  s+  + e++ + +++++a l+tth + ea   c+ +v + ng + a g+p++l+ 
  MMETSP1137-20121227|6947_1 616 EMADGEVTGLLGQNGAGKTTAINILCGLVRPTSGYARVRGH---DVRTHIGTIRSFSGVCAQHDTLLDDLTLAQHVELYaGVKSVDKRRAREQVEGWLQQLGMSEKLNTRADTLSGGQRRKLSLILALLGEPKFVLLDEPTAGMDPHSRRAVWEFVLS-SKAERATLLTTHFMDEADVLCSSLVvVSNGSLAASGSPSELKA 813
                 6789************************************7...55566666655555555555555555555444433133333444455679999*******9999999**********************************9999999997765.78889999*********888887651669***********985 PP

  == domain 2    score: 61.0 bits;  conditional E-value: 4.4e-19
   TIGR03771    3 vdkGellgllGpnGaGkttllrailglikvakGsvkvagkssrk....grreiGyvpqrhefawdfpidveqtvlsGragliGllr.rpkkadfaavadalervklteladrpvGelsGGqrqrvlvaralav.kpslllldepftGldlpsqellvelfeelagegtailmtthdlaeavatcdrvvlln.grvvadgapdqlq 200 
                  + +G   +llGpnGaGktt +  + g +k+++G   ++g s +      +++ G+ pq + + w+         l     l+  l+  +  a  aa+a+  e+  l e a++    lsGG r+++  a al+  +ps++++dep tG+d+ ++  + e ++e a + + +++tth + ea a ++r+ ++  gr+   g+p++l+
  MMETSP1137-20121227|6947_1 1465 IPNGTCFALLGPNGAGKTTAINLLTGELKPSAGDASIGGVSIHArlsdVFQNTGFCPQLKGL-WES------LTLRQHLSLVLRLKgHTGTALTAAIAKVEEEYGLREHAHKKAKLLSGGTRRKLSAAMALSCgNPSVVFVDEPTTGVDVGTRRFIWERIREAA-KRRVVVLTTHYMDEADALAQRIGIMSgGRLRVLGSPQHLK 1661
                  5679999******************************9976543011134455777776554.543......333333333333331345667788888889999**************************8658***********************999965.5678999***************877626777888998887 PP

>> TIGR02142  modC_ABC: molybdate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.8   0.0   5.3e-27   3.5e-25      15     223 ..     612     815 ..     603     842 .. 0.90
   2 !   48.0   0.1   3.3e-15   2.2e-13      18     221 ..    1463    1662 ..    1453    1695 .. 0.83
   3 ?    1.3   0.0      0.55        36     246     286 ..    1730    1770 ..    1715    1777 .. 0.84

  Alignments for each domain:
  == domain 1    score: 86.8 bits;  conditional E-value: 5.3e-27
   TIGR02142  15 dvdlelpgkgvtalFGrsGsGktslirliaGLtrpdegeivldgevlqdsrkkiilppekRrvgyvFqeArLFpHlsvren..LrYGlkraraeerriseekvielLgiehLleRlpgkLsGGekqRvaigRAlLssPeLLlmDePLaaLDekrkkeilPyLerlsaelkiPilyvsHsldevarladrvvvledGrvkaagkleevlask 223
                 d+ +e+   +vt+l G+ G+Gkt+ i+++ GL+rp++g   + g+   d r    + + +   g+  q+ +L   l+ ++   L  G+k+++ ++ r + e  ++ Lg+++ l+ ++ +LsGG + + ++  AlL +P+ +l+DeP a +D ++++ +  ++  ls++ +   l+  H +de   l   +vv+ +G ++a g++ e+ a+ 
  MMETSP1137-20121227|6947_1 612 DLTFEMADGEVTGLLGQNGAGKTTAINILCGLVRPTSGYARVRGH---DVRT--HIGTIRSFSGVCAQHDTLLDDLTLAQHveLYAGVKSVDKRRAREQVEGWLQQLGMSEKLNTRADTLSGGQRRKLSLILALLGEPKFVLLDEPTAGMDPHSRRAVWEFV--LSSKAERATLLTTHFMDEADVLCSSLVVVSNGSLAASGSPSELKAKY 815
                 567777777**********************************97...4455..4455566678889**********99862266799999999999999*************************************************************8..556666679*********************************98875 PP

  == domain 2    score: 48.0 bits;  conditional E-value: 3.3e-15
   TIGR02142   18 lelpgkgvtalFGrsGsGktslirliaGLtrpdegeivldgevlqdsrkkiilppekRrvgyvFqeArLFpHlsvrenLrYG..lkraraeerriseekvielLgiehLleRlpgkLsGGekqRvaigRAl.LssPeLLlmDePLaaLDekrkkeilPyLerlsaelk.iPilyvsHsldevarladrvvvledGrvkaagkleevla 221 
                  l +p     al G  G+Gkt+ i+l++G ++p++g  ++ g  ++     ++      + g+  q   L+  l+ r+ L     lk  +++   +  +kv e  g+ +  +++++ LsGG + + + + Al   +P ++ +DeP + +D   ++ i    er+++  k   +++  H +de   la+r+ ++  Gr++  g+++++ +
  MMETSP1137-20121227|6947_1 1463 LAIPNGTCFALLGPNGAGKTTAINLLTGELKPSAGDASIGGVSIHARLSDVF-----QNTGFCPQLKGLWESLTLRQHLSLVlrLKGHTGTALTAAIAKVEEEYGLREHAHKKAKLLSGGTRRKLSAAMALsCGNPSVVFVDEPTTGVDVGTRRFIW---ERIREAAKrRVVVLTTHYMDEADALAQRIGIMSGGRLRVLGSPQHLKT 1662
                  556776778********************************98876666555.....56688888888888888888876541145566667778899999*****************************94469*******************997...5555544413467889*************************9998765 PP

  == domain 3    score: 1.3 bits;  conditional E-value: 0.55
   TIGR02142  246 ekygltalalgdgallvskkeeavgaelrlrvkarDvslak 286 
                  +++ +++ +l+d+ l v++ + +  +++rl+v+a     a 
  MMETSP1137-20121227|6947_1 1730 QTFTMSQTTLEDVFLRVAAADTKRSKRTRLQVQAAATAAAA 1770
                  78899****************************98766555 PP

>> TIGR01184  ntrCD: nitrate ABC transporter, ATP-binding proteins C and D
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.7   0.0   2.1e-22   1.4e-20       1     197 [.     610     806 ..     610     814 .. 0.89
   2 !   63.2   0.0   8.6e-20   5.6e-18       2     193 ..    1459    1651 ..    1458    1661 .. 0.81

  Alignments for each domain:
  == domain 1    score: 71.7 bits;  conditional E-value: 2.1e-22
   TIGR01184   1 lkdvdleikkgefislighsgcgkstllnliaglekptsgavilegkei.tepgpdrm...vvfqnysllpwltvrenialavdavlrdlskserreiveehielvglreaadkrpeqlsggmkqrvaiaralsirpklllldepfgaldaltreelqekllkiveearvtvlmvthdvdealllsdrvvmltngpaakig 197
                 l+d+ +e+ +ge   l+g  g gk+t +n+++gl +ptsg  ++ g+++ t+ g  r    v  q  +ll  lt  + + l     +++++k   re ve  ++ +g++e  + r + lsgg ++++++  al   pk +lldep   +d  +r  + e +l    +a+ ++l+ th +dea +l+  +v+++ng  a  g
  MMETSP1137-20121227|6947_1 610 LNDLTFEMADGEVTGLLGQNGAGKTTAINILCGLVRPTSGYARVRGHDVrTHIGTIRSfsgVCAQHDTLLDDLTLAQHVELYAG--VKSVDKRRAREQVEGWLQQLGMSEKLNTRADTLSGGQRRKLSLILALLGEPKFVLLDEPTAGMDPHSRRAVWEFVLSS--KAERATLLTTHFMDEADVLCSSLVVVSNGSLAASG 806
                 57889999****************************************9445688885444889**************999654..4455566667789************************************************************98865..555677999********************988776 PP

  == domain 2    score: 63.2 bits;  conditional E-value: 8.6e-20
   TIGR01184    2 kdvdleikkgefislighsgcgkstllnliaglekptsgavilegkeitepgpdrmvvfqnysllpwl.tvrenialavdavlrdlskser....reiveehielvglreaadkrpeqlsggmkqrvaiaralsi.rpklllldepfgaldaltreelqekllkiveearvtvlmvthdvdealllsdrvvmltngpa 193 
                  +++ l i +g   +l+g  g gk+t +nl++g  kp++g  ++ g  i++   d   vfqn  + p l    e ++l  +  l  + k        + + +  e  glre a+k+ + lsgg +++++ a als   p ++++dep   +d  tr  + e++ + ++  r  v++ th +dea  l++r+ +++ g  
  MMETSP1137-20121227|6947_1 1459 DGLTLAIPNGTCFALLGPNGAGKTTAINLLTGELKPSAGDASIGGVSIHARLSD---VFQNTGFCPQLkGLWESLTLRQHLSLVLRLKGHTgtalTAAIAKVEEEYGLREHAHKKAKLLSGGTRRKLSAAMALSCgNPSVVFVDEPTTGVDVGTRRFIWERIREAAK--RRVVVLTTHYMDEADALAQRIGIMSGGRL 1651
                  678999******************************************998777...9***9999953134455555444433333333330000444455556679**************************9857***********************9887654..5678999***************9998865 PP

>> TIGR01187  potA: polyamine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.4   0.0   1.8e-21   1.2e-19       1     194 [.     625     817 ..     625     826 .. 0.92
   2 !   65.8   0.0   1.1e-20   7.3e-19       1     188 [.    1473    1660 ..    1473    1668 .. 0.94

  Alignments for each domain:
  == domain 1    score: 68.4 bits;  conditional E-value: 1.8e-21
   TIGR01187   1 lLGpsGsGkttlLrllaGleeldsGkilldgedvtevpaekrsv.nvvfqsyaLfPhmtveenvafgLkmrkvpkaeikervkeaLelvqleefakrkpsqlsGGqrqrvalaravvkkPkiLLlDeplsaLDkkLrdqmqlelkalqeklGitvvlvthDqeealtmsdriavlrkGkiaqigepeeiyeePan 194
                 lLG  G+Gktt + +l Gl ++ sG   + g+dv +     rs  +v  q   L   +t+++ v     ++ v+k   +e+v+  L+   ++e  + +   lsGGqr++++l  a+  +Pk +LlDep + +D + r  + + +  l  k   +++l th  +ea  +   ++v+++G +a  g+p e+ ++ a+
  MMETSP1137-20121227|6947_1 625 LLGQNGAGKTTAINILCGLVRPTSGYARVRGHDVRTHIGTIRSFsGVCAQHDTLLDDLTLAQHVELYAGVKSVDKRRAREQVEGWLQQLGMSEKLNTRADTLSGGQRRKLSLILALLGEPKFVLLDEPTAGMDPHSRRAVWEFV--LSSKAERATLLTTHFMDEADVLCSSLVVVSNGSLAASGSPSELKAKYAS 817
                 89********************************888888787626778999***********************************************************************************999886544..6677778899*******************************99877655 PP

  == domain 2    score: 65.8 bits;  conditional E-value: 1.1e-20
   TIGR01187    1 lLGpsGsGkttlLrllaGleeldsGkilldgedvtevpae.krsvnvvfqsyaLfPhmtveenvafgLkmrkvpkaeikervkeaLelvqleefakrkpsqlsGGqrqrvalaravvk.kPkiLLlDeplsaLDkkLrdqmqlelkalqeklGitvvlvthDqeealtmsdriavlrkGkiaqigepeei 188 
                  lLGp G+Gktt + ll G  ++++G   ++g+++  + ++  ++ +   q   L+  +t+ + ++  L++++   + +++ + ++ e   l+e a++k + lsGG r++++ a a+   +P ++++Dep + +D   r  + + +++  ++    vvl th  +ea ++++ri++++ G++   g+p+ +
  MMETSP1137-20121227|6947_1 1473 LLGPNGAGKTTAINLLTGELKPSAGDASIGGVSIHARLSDvFQNTGFCPQLKGLWESLTLRQHLSLVLRLKGHTGTALTAAIAKVEEEYGLREHAHKKAKLLSGGTRRKLSAAMALSCgNPSVVFVDEPTTGVDVGTRRFIWERIREAAKRR--VVVLTTHYMDEADALAQRIGIMSGGRLRVLGSPQHL 1660
                  8*********************************98766515788899999****************************************************************97537*************************9988775..5799*************************9999876 PP

>> TIGR03269  met_CoM_red_A2: methyl coenzyme M reductase system, component A2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.9   0.0   1.9e-24   1.2e-22     297     516 ..     607     812 ..     590     818 .. 0.83
   2 !   50.4   0.0   4.1e-16   2.6e-14     279     514 ..    1434    1659 ..    1417    1665 .. 0.82

  Alignments for each domain:
  == domain 1    score: 77.9 bits;  conditional E-value: 1.9e-24
   TIGR03269 297 vkavdnvslevkekeifGlvGtsGaGkttlskilaGvleptsGevevrvGdewvdmtkkgvlerGrakkyiGllhqeyalyphrtvlenlteaiglelpdel...akrkavivlkavGfdee.kakeildklpdelseGerhrvalaqvlikeprivildeptGtmdpitkvkvaesilkareeleetfvivshdmdfvlevcdraalmrdGkivkiGdpeeiv 516
                 v+a++++++e+ ++e+ Gl+G+ GaGktt  +il G++ ptsG   vr  ++         ++ G ++ + G+  q      h t+l++lt a  +el   +    kr+a    ++ G+ ++    e l+  +d+ls G+r +++l   l+ ep+ v+ldept  mdp ++++v e +l ++ e  ++ ++ +h md    +c    ++ +G +   G+p e+ 
  MMETSP1137-20121227|6947_1 607 VHALNDLTFEMADGEVTGLLGQNGAGKTTAINILCGLVRPTSGYARVRG-HDV-------RTHIGTIRSFSGVCAQ------HDTLLDDLTLAQHVELYAGVksvDKRRAR--EQVEGWLQQlGMSEKLNTRADTLSGGQRRKLSLILALLGEPKFVLLDEPTAGMDPHSRRAVWEFVLSSKAE--RATLLTTHFMDEADVLCSSLVVVSNGSLAASGSPSELK 812
                 8999***************************************999994.432.......2345788999999987......78889999999999987655100344443..3444554441456789***************************************************9987..567899***************************99875 PP

  == domain 2    score: 50.4 bits;  conditional E-value: 4.1e-16
   TIGR03269  279 iikvkdvskryisvdrG...vvkavdnvslevkekeifGlvGtsGaGkttlskilaGvleptsGevevrvGdewvdmtkk.gvlerGrakkyiGllhqeyalyphrtvlenlteaiglelpdelakrkavivlkavGfdeekakeildklpdelseGerhrvalaqvl.ikeprivildeptGtmdpitkvkvaesilkareeleetfvivshdmdfvlevcdraalmrdGkivkiGdpee 514 
                  ++++  ++k ++    G    v avd+++l + ++  f l+G  GaGktt  ++l G l+p++G+    +G   +       +++ G + +  G l++  +l  h +++  l    g  l   +ak    + l+          e  +k ++ ls G r +++ a  l   +p +v +dept  +d  t++ + e i +a +   +  v+ +h md    + +r+++m  G++  +G+p++
  MMETSP1137-20121227|6947_1 1434 VVRMVGLRKDFYPRRCGgqkAVTAVDGLTLAIPNGTCFALLGPNGAGKTTAINLLTGELKPSAGDAS--IGGVSIHARLSdVFQNTGFCPQLKG-LWESLTLRQHLSLVLRLKGHTGTALTAAIAKVEEEYGLR----------EHAHKKAKLLSGGTRRKLSAAMALsCGNPSVVFVDEPTTGVDVGTRRFIWERIREAAK--RRVVVLTTHYMDEADALAQRIGIMSGGRLRVLGSPQH 1659
                  7788888888887665533368899***************************************987..5655555443304566666666555.678889999998888888888888888888776665554..........3345667889*******99998883579*************************99987..4788999**********************99999986 PP

>> TIGR00972  3a0107s01c2: phosphate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.9   0.0   3.4e-22   2.2e-20      14     230 ..     607     811 ..     591     817 .. 0.88
   2 !   53.2   0.0   8.4e-17   5.5e-15      15     228 ..    1456    1658 ..    1450    1663 .. 0.87

  Alignments for each domain:
  == domain 1    score: 70.9 bits;  conditional E-value: 3.4e-22
   TIGR00972  14 kealkdvnleikknkvtaliGpsGcGkstllrslnrlndlveevrieGkvllegkdiydkkldvvelrkkvGmvfqkpnpfp.msiydnvayglrlkgikdkkeldeiveesLkkaalwdevkdklkksalsLsGGqqqrlciaralavePevlLlDePtsaLDpiatekieeliqeLkkkytivivthnmqqaarvsdktaffleGelveegeteqi 230
                  +al+d+++e+ + +vt+l+G  G+Gk+t +  l     lv    ++G   ++g+d+  +   + ++r+  G+  q+ +     ++ + v +   +k   dk++ +e ve  L++ ++     +kl++ a +LsGGq+++l++  al  eP+ +LlDePt+ +Dp + + + e++ + k +   ++ th m+ a  +    +++ +G+l  +g+++++
  MMETSP1137-20121227|6947_1 607 VHALNDLTFEMADGEVTGLLGQNGAGKTTAINILC---GLV--RPTSGYARVRGHDVRTH---IGTIRSFSGVCAQHDTLLDdLTLAQHVELYAGVKS-VDKRRAREQVEGWLQQLGMS----EKLNTRADTLSGGQRRKLSLILALLGEPKFVLLDEPTAGMDPHSRRAVWEFVLSSKAERATLLTTHFMDEADVLCSSLVVVSNGSLAASGSPSEL 811
                 479**************************765555...555..3458999999***9776...8899************9986899999998888876.6788999**********998....7999999*************************************************99999*************************999988776 PP

  == domain 2    score: 53.2 bits;  conditional E-value: 8.4e-17
   TIGR00972   15 ealkdvnleikknkvtaliGpsGcGkstllrslnrlndlveevrieGkvllegkdiydkkldvvelrkkvGmvfqkpnpfp.msiydnvayglrlkgikdkkeldeiveesLkkaalwdevkdklkksalsLsGGqqqrlciaralav.ePevlLlDePtsaLDpiatekieeliqeLkkkytivivthnmqqaarvsdktaffleGelveegete 228 
                  +a++ ++l i++ +  al+Gp G+Gk+t    +n l+  +     +G+  + g +i+++  dv+   ++ G   q    +   ++ + +++ lrlkg ++ ++l +++ +  ++ +l     ++++k+a  LsGG +++l+ a al+  +P v+ +DePt  +D  + + i e i+e +k+  +v+ th m+ a  +++++ ++  G+l   g+++
  MMETSP1137-20121227|6947_1 1456 TAVDGLTLAIPNGTCFALLGPNGAGKTTA---INLLTGEL--KPSAGDASIGGVSIHARLSDVF---QNTGFCPQLKGLWEsLTLRQHLSLVLRLKG-HTGTALTAAIAKVEEEYGLR----EHAHKKAKLLSGGTRRKLSAAMALSCgNPSVVFVDEPTTGVDVGTRRFIWERIREAAKRRVVVLTTHYMDEADALAQRIGIMSGGRLRVLGSPQ 1658
                  6899999********************96...57776655..356899999*****99977765...688999999888875788899999999998.66677777777777777776....899*********************8768*********************************************************998777666 PP

>> TIGR02204  MsbA_rel: ABC transporter, permease/ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.9   0.0   1.7e-23   1.1e-21     337     565 ..     591     815 ..     584     826 .. 0.89
   2 !   46.3   0.1   7.9e-15   5.1e-13     351     561 ..    1453    1660 ..    1414    1672 .. 0.80

  Alignments for each domain:
  == domain 1    score: 74.9 bits;  conditional E-value: 1.7e-23
   TIGR02204 337 eiefeevkfayParpdqkaldgldltvrpGetvalvGPsGaGkstllelllrfydPqsGailldGvdlreldpeelrerlalvpqdsalfaasvleniryGrpdasdeeveaaakaaeadefisklpeGydtllGergvtLsGGqkqriaiarailkdapiLLLdeatsaLdaeseqlvqqaleelmkgrttlviahrLatv.lkadrivvldkGriveqGthaeLiakg 565
                 +++ ++++ ++ + p  +al++l +++  Ge+  l G  GaGk+t +++l     P+sG  ++ G d+r  +   +r+   + +q+ +l+    l   ++ ++ a  + v +     + ++++++l  G + +l  r+ tLsGGq++++++  a+l + + +LLde t+ +d +s ++v + + +  ++r+tl+  h +      +  +vv+ +G + ++G+ +eL ak 
  MMETSP1137-20121227|6947_1 591 AVRAHRLSKTFGSDPPVHALNDLTFEMADGEVTGLLGQNGAGKTTAINILCGLVRPTSGYARVRGHDVRT-HIGTIRSFSGVCAQHDTLLDDLTL--AQHVELYAGVKSVDKRRAREQVEGWLQQL--GMSEKLNTRADTLSGGQRRKLSLILALLGEPKFVLLDEPTAGMDPHSRRAVWEFVLSSKAERATLLTTHFMDEAdVLCSSLVVVSNGSLAASGSPSELKAKY 815
                 67777888888899999***************************************************96.5789*************9976554..4677889999999999999999*****99..999******************************************************************9954414588999**************998764 PP

  == domain 2    score: 46.3 bits;  conditional E-value: 7.9e-15
   TIGR02204  351 pdqkaldgldltvrpGetvalvGPsGaGkstllelllrfydPqsGailldGvdlreldpeelrerlalvpqdsalfaasvl.eniryG.rpdasdeeveaaakaaeadefisklpeGydtllGergvtLsGGqkqriaiarailk.dapiLLLdeatsaLdaeseqlvqqaleelmkgrttlviahrLatv.lkadrivvldkGriveqGthaeL 561 
                     +a+dgl l++ +G   al GP GaGk+t ++ll    +P+ G  +++Gv + +   +++ ++  + pq   l+ +  l + +    r++  +    +aa a   +      + G   +   ++  LsGG +++++ a a+   +  ++++de t+ +d  + + + + + e+ k r  ++  h +      a ri ++  Gr+   G+ ++L
  MMETSP1137-20121227|6947_1 1453 KAVTAVDGLTLAIPNGTCFALLGPNGAGKTTAINLLTGELKPSAGDASIGGVSIHAR-LSDVFQNTGFCPQLKGLWESLTLrQHLSLVlRLKGHTGTALTAAIAKVEE------EYGLREHAHKKAKLLSGGTRRKLSAAMALSCgNPSVVFVDEPTTGVDVGTRRFIWERIREAAKRRVVVLTTHYMDEAdALAQRIGIMSGGRLRVLGSPQHL 1660
                  456799************************************************875.556667889******99976554144443314444444444444443333......4588899999*******************76266799************************************987625699********99888876655 PP

>> TIGR01842  type_I_sec_PrtD: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.1   0.0   1.5e-20   9.4e-19     332     542 ..     608     813 ..     594     815 .. 0.85
   2 !   52.7   0.0   8.6e-17   5.6e-15     330     540 ..    1454    1660 ..    1444    1663 .. 0.88

  Alignments for each domain:
  == domain 1    score: 65.1 bits;  conditional E-value: 1.5e-20
   TIGR01842 332 ktlkgisfalkaGealaiiGpsgsGkssLarllvGvwlpasGsvrlDgadlkqwdretlGksiGYlPqdveLfeG.tvaeniaRfeenadaekvieaaklagvhelilrlpkGYdteigegGaaLsgGqrqRiaLaRalygdPklvvLDePnanLDeeGeqalakalkelkarkitvvvithrpsllelvdkilvlkdGalkafGereevlk 542
                 + l++++f++  Ge+ +++G+ g+Gk++   +l G + p+sG  r+ g d++     t+  + G   q   L++  t+a+ +  +      ++v +     +v   +++l  G   ++ ++  +LsgGqr +++L  al g+Pk+v+LDeP a +D +   a+ + + + ka+++t ++     ++  l   ++v+++G+l+a G+ +e+++
  MMETSP1137-20121227|6947_1 608 HALNDLTFEMADGEVTGLLGQNGAGKTTAINILCGLVRPTSGYARVRGHDVRT-HIGTIRSFSGVCAQHDTLLDDlTLAQHVELYAG---VKSVDKRRAREQVEGWLQQL--GMSEKLNTRADTLSGGQRRKLSLILALLGEPKFVLLDEPTAGMDPHSRRAVWEFVLSSKAERATLLTTHFMDEADVLCSSLVVVSNGSLAASGSPSELKA 813
                 5799**********************************************986.467788888888887777754388888776666...33343444445666677776..8899********************************************************99998877667777778899*************9888876 PP

  == domain 2    score: 52.7 bits;  conditional E-value: 8.6e-17
   TIGR01842  330 kkktlkgisfalkaGealaiiGpsgsGkssLarllvGvwlpasGsvrlDgadlkqwdretlGksiGYlPqdveLfeG.tvaeniaRfeenadaekvieaaklagvhelilrlpkGYdteigegGaaLsgGqrqRiaLaRal.ygdPklvvLDePnanLDeeGeqalakalkelkarkitvvvithrpsllelvdkilvlkdGalkafGereev 540 
                  + + + g+++a+ +G   a++Gp g+Gk++   ll+G  +p++G   + g++++    + + ++ G+ Pq   L e  t+ + ++ + +          a +a+v e     + G   +  ++ + LsgG r +++ a al  g+P +v +DeP + +D      + + + e+ +r+++v++     ++ +l+++i +++ G+l+++G+ +++
  MMETSP1137-20121227|6947_1 1454 AVTAVDGLTLAIPNGTCFALLGPNGAGKTTAINLLTGELKPSAGDASIGGVSIHARLSDVF-QNTGFCPQLKGLWESlTLRQHLSLVLRLKGHTGTALTAAIAKVEE-----EYGLREHAHKKAKLLSGGTRRKLSAAMALsCGNPSVVFVDEPTTGVDVGTRRFIWERIREAAKRRVVVLTTHYMDEADALAQRIGIMSGGRLRVLGSPQHL 1660
                  446799***********************************************99988888.678*********986599**9997777555566666777899887.....7799999999******************9569*****************************9999888777777788999***************987765 PP

>> TIGR02203  MsbA_lipidA: lipid A export permease/ATP-binding protein MsbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.6   0.0   7.7e-23     5e-21     332     558 ..     592     814 ..     586     823 .. 0.88
   2 !   43.7   0.0   4.3e-14   2.8e-12     344     554 ..    1453    1659 ..    1445    1674 .. 0.86

  Alignments for each domain:
  == domain 1    score: 72.6 bits;  conditional E-value: 7.7e-23
   TIGR02203 332 vefrnvtfrypgd.drealdsislkveaGevvalvGrsGsGkstlvnllpRFyepdsGeillDgvdladlkLasLRrqvalvsqdvvLFdd.tiaenva.YgeleevdeaeveealaaaylkdlvdklpeGldtevGengskLsGGqRqRlaiaRallkdaPiLiLDeatsaLDneseRlvqaaLerlmkgRttlviahRLstiek.aDrivvlddGkiverGtheeLlar 558
                 v+ + ++ ++++d  ++al+++ ++++ Gev+ l G+ G+Gk+t +n+l   + p+sG   + g+d++  ++ ++R+   + +q+ +L dd t+a+ v  Y+  ++vd+ + +e ++   l++       G+  ++ +++  LsGGqR +l++  all +   ++LDe t+ +D  s R+v + +     +R tl+  h +   +     +vv+ +G +  +G+ +eL a+
  MMETSP1137-20121227|6947_1 592 VRAHRLSKTFGSDpPVHALNDLTFEMADGEVTGLLGQNGAGKTTAINILCGLVRPTSGYARVRGHDVRT-HIGTIRSFSGVCAQHDTLLDDlTLAQHVElYAGVKSVDKRRAREQVE-GWLQQ------LGMSEKLNTRADTLSGGQRRKLSLILALLGEPKFVLLDEPTAGMDPHSRRAVWEFVLSSKAERATLLTTHFMDEADVlCSSLVVVSNGSLAASGSPSELKAK 814
                 55667778887763589**************************************************86.7899***************99899****7588888888888877765.45554......59********************************************************************98766542557899**********99998664 PP

  == domain 2    score: 43.7 bits;  conditional E-value: 4.3e-14
   TIGR02203  344 ddrealdsislkveaGevvalvGrsGsGkstlvnllpRFyepdsGeillDgvdladlkLasLRrqvalvsqdvvLFdd.tiaenvaYgeleevdeaeveealaaaylkdlvdklpeGldtevGengskLsGGqRqRlaiaRallkdaP.iLiLDeatsaLDneseRlvqaaLerlmkgRttlviahRLstiek.aDrivvlddGkiverGthee 554 
                  + + a+d++ l + +G+  al G+ G+Gk+t +nll+  ++p++G+  + gv + + +L+++ ++  +  q   L++  t+ + ++   +    + +  +al+aa +k  v + + Gl  +  +++ +LsGG R +l+ a al    P ++ +De t+ +D    R + + + +  k R  ++  h +   +  a ri ++  G++   G+ ++
  MMETSP1137-20121227|6947_1 1453 KAVTAVDGLTLAIPNGTCFALLGPNGAGKTTAINLLTGELKPSAGDASIGGVSI-HARLSDVFQNTGFCPQLKGLWESlTLRQHLSLVLR---LKGHTGTALTAAIAK--V-EEEYGLREHAHKKAKLLSGGTRRKLSAAMALSCGNPsVVFVDEPTTGVDVGTRRFIWERIREAAKRRVVVLTTHYMDEADAlAQRIGIMSGGRLRVLGSPQH 1659
                  56789************************************************9.579*****************997567777776655...445566777777665..3.4578***************************9877747889*********************************9988875489999999999866665444 PP

>> TIGR02769  nickel_nikE: nickel import ATP-binding protein NikE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.8   0.0   4.5e-19   2.9e-17      24     234 ..     607     807 ..     590     836 .. 0.81
   2 !   39.2   0.1   1.8e-12   1.2e-10      24     229 ..    1455    1651 ..    1447    1664 .. 0.84

  Alignments for each domain:
  == domain 1    score: 60.8 bits;  conditional E-value: 4.5e-19
   TIGR02769  24 kavldnvslsleeGetvallGrsGaGkstlarlllGlekPakGevsfrGqdlakldrkqrkafrrdvqlvfqdsisavnprksvreiigePlrhltsldeserkariaellelvelrsevldklPrqlsGGqlqriniaralavePklivldeavsnldlvlqasilellkklkqefGlaylfithdlrlvqkfaqrvlvldeGqiveeik 234
                  + l+++ +++ +Ge  +llG+ GaGk+t   +l Gl +P++G  + rG+d+      + ++f     +  q    ++    ++ + + e    ++s+d+ + +++++  l++++++ e+l+ +   lsGGq +++++  al  ePk+++lde  + +d + + ++ e +     ++  a l+ th +  ++ ++  ++v+ +G +    +
  MMETSP1137-20121227|6947_1 607 VHALNDLTFEMADGEVTGLLGQNGAGKTTAINILCGLVRPTSGYARVRGHDVRTH-IGTIRSFS---GVCAQH--DTLLDDLTLAQHV-ELYAGVKSVDKRRAREQVEGWLQQLGMS-EKLNTRADTLSGGQRRKLSLILALLGEPKFVLLDEPTAGMDPHSRRAVWEFVL--SSKAERATLLTTHFMDEADVLCSSLVVVSNGSLAASGS 807
                 5679***********************************************9653.33444444...333332..3344455555554.6778899*******************95.67888899******************************************985..55666799***********************9876554 PP

  == domain 2    score: 39.2 bits;  conditional E-value: 1.8e-12
   TIGR02769   24 kavldnvslsleeGetvallGrsGaGkstlarlllGlekPakGevsfrGqdlakldrkqrkafrrdvqlvfqdsisavnprksvreiigePlrhltsldeserkariaellelvelrsevldklPrqlsGGqlqriniaralav.ePklivldeavsnldlvlqasilellkklkqefGlaylfithdlrlvqkfaqrvlvldeGqi 229 
                   + +d++ l++ +G + allG  GaGk+t   ll G  kP+ G+ s  G+ +     +    f+ +    f      +    ++r+ ++  lr l+    ++  a ia++ e+ +lr e+++k+ + lsGG  ++++ a al+  +P ++ +de  + +d+  +  i e +++  ++    +++ th +  ++ +aqr+ ++ +G++
  MMETSP1137-20121227|6947_1 1455 VTAVDGLTLAIPNGTCFALLGPNGAGKTTAINLLTGELKPSAGDASIGGVSIHA---RLSDVFQNT---GFCPQLKGLWESLTLRQHLSLVLR-LKGHTGTALTAAIAKVEEEYGLR-EHAHKKAKLLSGGTRRKLSAAMALSCgNPSVVFVDEPTTGVDVGTRRFIWERIREAAKRR--VVVLTTHYMDEADALAQRIGIMSGGRL 1651
                  45678999*****************************************98853...222333332...344455566666777777777666.556667788899999999****8.6789999*****************8659*************************9977665..6799*********************97 PP

>> TIGR03719  ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.2   0.0   3.7e-08   2.4e-06     322     381 ..     591     653 ..     579     667 .. 0.85
   2 !   27.1   0.0     5e-09   3.2e-07     111     197 ..     673     761 ..     655     787 .. 0.81
   3 !   51.0   0.0   2.9e-16   1.9e-14     337     497 ..    1457    1628 ..    1416    1643 .. 0.80

  Alignments for each domain:
  == domain 1    score: 24.2 bits;  conditional E-value: 3.7e-08
   TIGR03719 322 vievenlskafgdk...lliddlsfklpkggivGviGpnGaGkstlfklitgkekpdsGelki 381
                  ++++ lsk+fg+      ++dl+f++  g + G++G nGaGk+t ++++ g  +p sG  ++
  MMETSP1137-20121227|6947_1 591 AVRAHRLSKTFGSDppvHALNDLTFEMADGEVTGLLGQNGAGKTTAINILCGLVRPTSGYARV 653
                 578899999999763325689*************************************98776 PP

  == domain 2    score: 27.1 bits;  conditional E-value: 5e-09
   TIGR03719 111 aeedadfdkl.leeqaklqekidaadawdldskleiamdalrlpee.dakveklsGGekrrvalcrlllekPdlllldePtnhldaesv 197
                 a++d  +d l l+++ +l + ++++d     +++e  ++ l + e+ +++ ++lsGG++r+++l   ll +P ++lldePt  +d  s 
  MMETSP1137-20121227|6947_1 673 AQHDTLLDDLtLAQHVELYAGVKSVDKRRAREQVEGWLQQLGMSEKlNTRADTLSGGQRRKLSLILALLGEPKFVLLDEPTAGMDPHSR 761
                 44455555552567789999*********************9987548999*********************************98875 PP

  == domain 3    score: 51.0 bits;  conditional E-value: 2.9e-16
   TIGR03719  337 liddlsfklpkggivGviGpnGaGkstlfklitgkekpdsGelkiGet...vklayvdqsrdalddnktvweeisdGldl...lkl.gkvevnsrayvgrfnfk.G..adqqkkvgelsGGernrvhlakllkegg.nvllldePtndldvetlraleeallefaGcavvis 497 
                   +d l++ +p+g+   ++GpnGaGk+t ++l+tg+ kp +G+ +iG      +l+ v q+     + k +we+++  + l   l+l g++     a +++ + + G  +  +kk + lsGG r ++  a+ l  g+  v+++dePt  +dv t r + e + e a   vv+ 
  MMETSP1137-20121227|6947_1 1457 AVDGLTLAIPNGTCFALLGPNGAGKTTAINLLTGELKPSAGDASIGGVsihARLSDVFQNTGFCPQLKGLWESLTLRQHLslvLRLkGHTGTALTAAIAKVEEEyGlrEHAHKKAKLLSGGTRRKLSAAMALSCGNpSVVFVDEPTTGVDVGTRRFIWERIREAAKRRVVVL 1628
                  4799*****************************************97422247888999999999********99776642114443333444455555554321221567899******************9876379******************999999988777764 PP

>> TIGR02324  CP_lyasePhnL: phosphonate C-P lyase system protein PhnL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.3   0.0     7e-20   4.6e-18      21     215 ..     607     791 ..     591     798 .. 0.88
   2 !   34.8   0.0   3.8e-11   2.5e-09       3     212 ..    1436    1637 ..    1434    1646 .. 0.82

  Alignments for each domain:
  == domain 1    score: 63.3 bits;  conditional E-value: 7e-20
   TIGR02324  21 lpvlkevsleveaGelvalsGksGaGkstllkslyanYlpesgrilvrhegeivdlvkaserevlevRrktigyvsqfLrviPRvsalevvaepllelGvereearakakellarlniperLWslaPatfsGGekqRvniaraliadrPiLLLdePtasLdaanrkvvvelikeakargaaligifhdeevrelv 215
                 +++l+++++e+++Ge++ l G+ GaGk t +  l +  +p sg  +vr ++  +        ++ ++R +  g  +q    +  ++  + v+  + ++ v++ +ar++++ +l++l ++e+L + a  t sGG ++++ +  al+ +   +LLdePta +d   r++v e++ + ka++a+l++    +e+  l+
  MMETSP1137-20121227|6947_1 607 VHALNDLTFEMADGEVTGLLGQNGAGKTTAINILCGLVRPTSGYARVRGHDVRT--------HIGTIR-SFSGVCAQHDTLLDDLTLAQHVELYAGVKSVDKRRAREQVEGWLQQLGMSEKLNTRA-DTLSGGQRRKLSLILALLGEPKFVLLDEPTAGMDPHSRRAVWEFVLSSKAERATLLTTHFMDEADVLC 791
                 6789***************************************99998755444........566777.45688899999999999999999999999************************9999.9******************88889*******************************9987766665555 PP

  == domain 2    score: 34.8 bits;  conditional E-value: 3.8e-11
   TIGR02324    3 evedlsktfilhqqgGvk.lpvlkevsleveaGelvalsGksGaGkstllkslyanYlpesgrilvrhegeivdlvkaserevlevRrktigyvsqfLrviPRvsalevvaepllelGvereearakakellarlniperLWslaPatfsGGekqRvniaraliadrP.iLLLdePtasLdaanrkvvvelikeakargaaligifhdeevr 212 
                  ++ +l+k f   + gG k + +++ ++l++ +G + al G+ GaGk t +  l ++ +p++g   +      +      + ++ +v  ++ g+  q       ++ ++ +   l+ +G + ++ +a+ +++ + + + e+  + a    sGG ++++  a+al    P ++ +dePt+ +d  +r+ + e i+ea +r++ +++  + +e+ 
  MMETSP1137-20121227|6947_1 1436 RMVGLRKDFYPRRCGGQKaVTAVDGLTLAIPNGTCFALLGPNGAGKTTAINLLTGELKPSAGDASIGG--VSI------HARLSDVF-QNTGFCPQLKGLWESLTLRQHLSLVLRLKGHTGTALTAAIAKVEEEYGLREHAHKKA-KLLSGGTRRKLSAAMALSCGNPsVVFVDEPTTGVDVGTRRFIWERIREAAKRRVVVLTTHYMDEAD 1637
                  678899*****99999763789****************************************988754..333......33455666.4669**998777777777777777777777777777777777777888888888877.899***************999945678***********************9999998877666655 PP

>> TIGR01846  type_I_sec_HlyB: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.0   0.0   1.1e-19   7.2e-18     471     681 ..     608     814 ..     586     823 .. 0.88
   2 !   34.5   0.1   2.4e-11   1.6e-09     471     678 ..    1456    1660 ..    1450    1673 .. 0.80

  Alignments for each domain:
  == domain 1    score: 62.0 bits;  conditional E-value: 1.1e-19
   TIGR01846 471 evlsnlsldikaGeviGivGpsGsGkstltkllqrlyvPekGrvlvdgvdlaladPawlrrqvgvvlqenvlfsr.sirdnialakPaiseekviaaaklaGahdfiselkqGyetevgekGaalsGGqrqrialaralvanPrilildeatsaldyeseavimrnlreickgrtviiiahrlstv.raadrilvlekGkivesGkheellak 681
                 + l++l++++++Gev G+ G+ G+Gk+t   +l  l  P  G   v g+d+  +   ++r   gv  q + l++  ++++ + l     s++k +a  ++ G       ++ G  ++++ +  +lsGGqr++++l  al+++P+ ++lde t+ +d +s +++ + + +  ++r+ +  +h ++     +  ++v+ +G ++ sG+ +el ak
  MMETSP1137-20121227|6947_1 608 HALNDLTFEMADGEVTGLLGQNGAGKTTAINILCGLVRPTSGYARVRGHDVR-THIGTIRSFSGVCAQHDTLLDDlTLAQHVELYAGVKSVDKRRAREQVEGWL-----QQLGMSEKLNTRADTLSGGQRRKLSLILALLGEPKFVLLDEPTAGMDPHSRRAVWEFVLSSKAERATLLTTHFMDEAdVLCSSLVVVSNGSLAASGSPSELKAK 814
                 4699**********************************************96.567899*********998886537888888888888888888888887754.....45699****************************************************9999999*999999999765157******************999776 PP

  == domain 2    score: 34.5 bits;  conditional E-value: 2.4e-11
   TIGR01846  471 evlsnlsldikaGeviGivGpsGsGkstltkllqrlyvPekGrvlvdgvdlaladPawlrrqvgvvlqenvlf.srsirdnialakPaiseekviaaaklaGahdfiselkqGyetevgekGaalsGGqrqrialaral.vanPrilildeatsaldyeseavimrnlreickgrtviiiahrlstvra.adrilvlekGkivesGkheel 678 
                  + ++ l+l i++G+   + Gp G+Gk+t   ll     P  G   + gv +     + + ++ g   q + l+ s ++r+ ++l      +        l+ a + + e + G  ++   k   lsGG r++++ a al  +nP ++ +de t+ +d  + + i +++re +k r v+  +h ++   a a+ri ++  G++   G+ + l
  MMETSP1137-20121227|6947_1 1456 TAVDGLTLAIPNGTCFALLGPNGAGKTTAINLLTGELKPSAGDASIGGVSIHARL-SDVFQNTGFCPQLKGLWeSLTLRQHLSLVLRLKGHTGTA----LTAAIAKV-EEEYGLREHAHKKAKLLSGGTRRKLSAAMALsCGNPSVVFVDEPTTGVDVGTRRFIWERIREAAKRRVVVLTTHYMDEADAlAQRIGIMSGGRLRVLGSPQHL 1660
                  567889****************************************999986443.444567777777666651346677777665444333333....33333333.457899999**********************558*****************************************987654389******9998777766555 PP

>> TIGR01978  sufC: FeS assembly ATPase SufC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.9   0.0   2.6e-17   1.7e-15      15     241 ..     609     820 ..     605     822 .. 0.88
   2 !   42.0   0.0   2.4e-13   1.6e-11      16     240 ..    1458    1668 ..    1451    1670 .. 0.83

  Alignments for each domain:
  == domain 1    score: 54.9 bits;  conditional E-value: 2.6e-17
   TIGR01978  15 iLkglnlevkkGevhaimGpnGsGkstLskvlaghekyevtsGeiklkgqdlleleveeraraGlflafqapeeipGvsnkeflrsalnavrkargeeeldllefekllkeklelleldeelleRslneGfsGGekkrneilqlallePklaiLDeiDsGlDvDalkivaegvnklreeekalliithyerllelikPdvvhvlldGrivksGdvelakelekkgyd 241
                  L++l+ e+  Gev  ++G+nG+Gk t  ++l g   ++ tsG  +++g+d+       r+  G+    q+ + +  ++ ++ +           g +++d +  +++++  l++l ++e+l +R   +  sGG +++  ++  +l ePk+++LDe  +G+D  + ++v e v + +  e+a+l+ th+    + +    v v+ +G +++sG+ + +k   + gy+
  MMETSP1137-20121227|6947_1 609 ALNDLTFEMADGEVTGLLGQNGAGKTTAINILCGL--VRPTSGYARVRGHDVRTHIGTIRSFSGV--CAQHDTLLDDLTLAQHVELY-------AGVKSVDKRRAREQVEGWLQQLGMSEKLNTRA--DTLSGGQRRKLSLILALLGEPKFVLLDEPTAGMDPHSRRAVWEFVLSSKA-ERATLLTTHFMDEADVLCSSLV-VVSNGSLAASGSPSELKAKYASGYH 820
                 6999*****************************96..6789************999999*****7..67888888888877766543.......35556888888999*****************6..889***********99999*************************987665.688999******9999877665.789********99877777777775 PP

  == domain 2    score: 42.0 bits;  conditional E-value: 2.4e-13
   TIGR01978   16 LkglnlevkkGevhaimGpnGsGkstLskvlaghekyevtsGeiklkgqdlleleveeraraGlflafqapeeipGvsnkeflrsalnavrkargeeeldllefekllkeklelleldeelleRslneGfsGGekkrn.eilqlallePklaiLDeiDsGlDvDalkivaegvnklreeekalliithyerllelikPdvvhvlldGrivksGdvelakelekkgy 240 
                  ++gl+l++ +G+  a++GpnG+Gk t  + l+g+ k   ++G+ ++ g ++ +          +f  +    ++ G+  +  lr+ l  v + +g++    ++ +  + +  e + l e+  ++   +  sGG +++    + l+  +P+++ +De   G+Dv + + + e + + ++ ++ +++ thy    ++++ + + ++  Gr+   G+ + +k+++  gy
  MMETSP1137-20121227|6947_1 1458 VDGLTLAIPNGTCFALLGPNGAGKTTAINLLTGELK--PSAGDASIGGVSIHARLS------DVFQNTGFCPQLKGLWESLTLRQHLSLVLRLKGHTG---TALTAAIAKVEEEYGLREHAHKK--AKLLSGGTRRKLsAAMALSCGNPSVVFVDEPTTGVDVGTRRFIWERIREAAK-RRVVVLTTHYMDEADALA-QRIGIMSGGRLRVLGSPQHLKTVHGGGY 1668
                  6899*****************************865..567888888887766444......47777778899******************9999996...45556667777777777755544..356899988776157899999**************************99876.5678999*****999997.789********99999999999988888 PP

>> TIGR00958  3a01208: antigen peptide transporter 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.4   0.0   4.4e-17   2.8e-15     488     709 ..     601     820 ..     591     822 .. 0.80
   2 !   38.6   0.1   1.3e-12   8.7e-11     494     702 ..    1455    1662 ..    1444    1670 .. 0.78

  Alignments for each domain:
  == domain 1    score: 53.4 bits;  conditional E-value: 4.4e-17
   TIGR00958 488 YPsrpdkpvlkdLtftlepGevvalVGPsGsGKStvaallenlYqPtgGqvllDgkplkeydhkylhrkvalVgqEPvlfs.gsvreNia.Y.GltktedeevtaaakaanahdFiselekgydtevgekGsqlsgGqkqriAiARALvrkPrvLiLDeAtSALDaeveqllqe..sksaksrtvlliahrLstvek.adkilvlkkgsvvelGthkqLmekedvykq 709
                 + s p +  l+dLtf ++ Gev+ l G +G GK t + +l  l +Pt+G   + g++++      +++  ++ +q   l    ++ + +  Y G++++++ +      + +++ ++++l  g+  +++ +   lsgGq+ ++ +  AL+ +P  ++LDe t+ +D ++ +++ e    s+++r+ ll +h +  +   +   +v+++gs+   G  ++L++k    ++
  MMETSP1137-20121227|6947_1 601 FGSDPPVHALNDLTFEMADGEVTGLLGQNGAGKTTAINILCGLVRPTSGYARVRGHDVRTH-IGTIRSFSGVCAQHDTLLDdLTLAQHVElYaGVKSVDKRRA-----REQVEGWLQQL--GMSEKLNTRADTLSGGQRRKLSLILALLGEPKFVLLDEPTAGMDPHSRRAVWEfvLSSKAERATLLTTHFMDEADVlCSSLVVVSNGSLAASGSPSELKAKYASGYH 820
                 667789999************************************************9864.45667777777887766651344443321224443333332.....22344444433..466777778899***************************************99988999************99975389999***************9988765555 PP

  == domain 2    score: 38.6 bits;  conditional E-value: 1.3e-12
   TIGR00958  494 kpvlkdLtftlepGevvalVGPsGsGKStvaallenlYqPtgGqvllDgkplkeydhkylhrkvalVgqEPvlfsg.svreNiaYGltktedeevtaaakaanahdFiselekgydtevgekGsqlsgGqkqriAiARAL.vrkPrvLiLDeAtSALDaeveqllqe.sksaks.rtvlliahrLstvek.adkilvlkkgsvvelGthkqLme 702 
                  +  + +Lt+ +  G+  al GP+G GK t + ll    +P +G+  + g+ ++        ++ +   q   l++  ++r+ ++  l+ + +     +a  a++     e e g   +  +k ++lsgG + ++  A AL   +P v+ +De t  +D+ + + + e  ++a++ r v+l +h +  +   a++i +++ g+++ lG  ++L++
  MMETSP1137-20121227|6947_1 1455 VTAVDGLTLAIPNGTCFALLGPNGAGKTTAINLLTGELKPSAGDASIGGVSIHARLSDV-FQNTGFCPQLKGLWESlTLRQHLSLVLRLKGHTGTALTAAIAKV-----EEEYGLREHAHKKAKLLSGGTRRKLSAAMALsCGNPSVVFVDEPTTGVDVGTRRFIWErIREAAKrRVVVLTTHYMDEADAlAQRIGIMSGGRLRVLGSPQHLKT 1662
                  45578***********************************************8654443.35556677777788633889999988887775554444444444.....45778889999********************668****************9999998875665550556666777877765377888888889999998888866 PP

>> TIGR03005  ectoine_ehuA: ectoine/hydroxyectoine ABC transporter, ATP-binding protein EhuA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.7   0.0   3.4e-18   2.2e-16       3     234 ..     594     811 ..     592     816 .. 0.90
   2 !   30.0   0.1   9.4e-10   6.1e-08      12     234 ..    1454    1660 ..    1447    1664 .. 0.88

  Alignments for each domain:
  == domain 1    score: 57.7 bits;  conditional E-value: 3.4e-18
   TIGR03005   3 isdvtkrfge...ltvldglelevaaGekvaliGpsGsGkstilrilmtletideGsikvegeqlyhmkgrkGklvpadekhlrkvrekiGmvfqsfnlfphktvldnvteapvlvkGvaraeaekravelldmvGladkadalpaqlsGGqkqrvaiaralalrpkvllfdevtsaldpelveevlnvlrrlasetdltmllvthemgfarefadrvlffdkGkiveeGkpdei 234
                  + ++k fg+   +  l++l +e+a Ge   l+G  G+Gk+t + il  l +   G  +v g+                  h+  +r   G+  q+  l+   t  + v +    vk v + +a+++    l+ +G+++k ++    lsGGq++++++  al  +pk +l+de+t+ +dp+    v + +  l+s+ + + ll th m  a  ++  ++   +G ++  G p e+
  MMETSP1137-20121227|6947_1 594 AHRLSKTFGSdppVHALNDLTFEMADGEVTGLLGQNGAGKTTAINILCGLVRPTSGYARVRGHD----V----------RTHIGTIRSFSGVCAQHDTLLDDLTLAQHVEL-YAGVKSVDKRRAREQVEGWLQQLGMSEKLNTRADTLSGGQRRKLSLILALLGEPKFVLLDEPTAGMDPHSRRAVWEFV--LSSKAERATLLTTHFMDEADVLCSSLVVVSNGSLAASGSPSEL 811
                 5666777764333789*****************************************9994432....2..........469999**************999998888755.56899999******************************************************************9987..677778889*******************************997 PP

  == domain 2    score: 30.0 bits;  conditional E-value: 9.4e-10
   TIGR03005   12 eltvldglelevaaGekvaliGpsGsGkstilrilmtletideGsikvegeqlyhmkgrkGklvpadekhlrkvrekiGmvfqsfnlfphktvldnvteapvlvkGvaraeaekravelldmvGladkadalpaqlsGGqkqrvaiaralal.rpkvllfdevtsaldpelveevlnvlrrlasetdltmllvthemgfarefadrvlffdkGkiveeGkpdei 234 
                   +t +dgl l + +G   al+Gp G+Gk+t + +l    + + G   + g  + h +             l  v ++ G+  q   l+   t  + + +  ++ kG + ++  +   ++ +  Gl + a++    lsGG +++++ a al+  +p v++ de+t+ +d      + + +r+ a+ +   ++l th m  a  +a+r+  +  G++   G p+++
  MMETSP1137-20121227|6947_1 1454 AVTAVDGLTLAIPNGTCFALLGPNGAGKTTAINLLTGELKPSAGDASI-GGVSIHAR-------------LSDVFQNTGFCPQLKGLWESLTLRQHLSL-VLRLKGHTGTALTAAIAKVEEEYGLREHAHKKAKLLSGGTRRKLSAAMALSCgNPSVVFVDEPTTGVDVGTRRFIWERIREAAKRR--VVVLTTHYMDEADALAQRIGIMSGGRLRVLGSPQHL 1660
                  57899****************************998877888999999.67777777.............67888999999999999988877666655.5899999888777777788899****************************8758****************9999999999987665..57899***********************99999876 PP

>> TIGR03415  ABC_choXWV_ATP: choline ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.2   0.0   2.4e-15   1.6e-13      38     260 ..     608     819 ..     597     829 .. 0.90
   2 !   44.1   0.0   4.4e-14   2.8e-12      37     321 ..    1455    1731 ..    1447    1775 .. 0.78

  Alignments for each domain:
  == domain 1    score: 48.2 bits;  conditional E-value: 2.4e-15
   TIGR03415  38 lgvadasldveeGeilvlmGlsGsGkssllravnglnpvsrGkvlvkdedkevdvakcdeatlrklrtkrvsmvfqkfallPWrtveenvafGlelsGvakaerrkrveeqlelvglaeWadkkvgelsGGmqqrvGlarafateadillmdePfsaldPliraklqdellelqkklkktivfvshdldealklGnriaimegGrivqlgtpeeivlkPaney 260
                  + +d ++++++Ge++ l+G  G+Gk++ +  + gl   + G  +v+ +d    +      t+r++      +  q+ +ll  +t+++ v +   ++ v k+  r++ve  l+ +g++e  +++++ lsGG ++++ l  a+  e + +l+deP + +dP  r  + + +  l +k +++ ++ +h +dea  l + + ++ +G +   g+p e+ +k a+ y
  MMETSP1137-20121227|6947_1 608 HALNDLTFEMADGEVTGLLGQNGAGKTTAINILCGLVRPTSGYARVRGHDVRTHIG-----TIRSFS----GVCAQHDTLLDDLTLAQHVELYAGVKSVDKRRAREQVEGWLQQLGMSEKLNTRADTLSGGQRRKLSLILALLGEPKFVLLDEPTAGMDPHSRRAVWEFV--LSSKAERATLLTTHFMDEADVLCSSLVVVSNGSLAASGSPSELKAKYASGY 819
                 56789999********************9999999999999999999888766554.....445443....4567999*************************************************************************************9998755..578899999*********************************988888777 PP

  == domain 2    score: 44.1 bits;  conditional E-value: 4.4e-14
   TIGR03415   37 vlgvadasldveeGeilvlmGlsGsGkssllravnglnpvsrGkvlvkdedkevdvakcdeatlrklrtkrvsmvfqkfallPWrtveenvafGlelsGvakaerrkrveeqlelvglaeWadkkvgelsGGmqqrvGlarafatead.illmdePfsaldPliraklqdellelqkklkktivfvshdldealklGnriaimegGrivqlgtpeeivlkPaneyvadfvahtnPlnvltakdlmrelealekvdde...lvlskrkdtylekadkqveeaaaklalaa 321 
                  v +v++ +l + +G    l+G  G+Gk++   a+n l     G+++ + +d ++  ++++++ l ++ + +     q  +l   +t+++ +++ l l+G +       +++  e  gl e a+kk++ lsGG ++++  a a++ + + ++++deP + +d   r  + + + e     ++ +v+ +h +dea  l +ri im gGr+  lg+p+++ +     y  ++ a+    + lta  +m + ++++++d++   lv++  k   l+   +++eea+ +l l++
  MMETSP1137-20121227|6947_1 1455 VTAVDGLTLAIPNGTCFALLGPNGAGKTT---AINLL----TGELKPSAGDASIGGVSIHAR-LSDVFQ-NTGFCPQLKGLWESLTLRQHLSLVLRLKGHTGTALTAAIAKVEEEYGLREHAHKKAKLLSGGTRRKLSAAMALSCGNPsVVFVDEPTTGVDVGTRRFIWERIREAA--KRRVVVLTTHYMDEADALAQRIGIMSGGRLRVLGSPQHLKTVHGGGYRVELKAEAEAEAALTAL-VMAHFTNVKRADSQrgtLVFDVGKGFSLSAVFAAFEEAKMTLGLQT 1731
                  77899999999999999999999999998...67766....488888889999888887654.444433.3456677778888899**********************************************************998747899*********99988877665544..468999********************************99999999999999999988888876.5555566666654311155555555555555555555555555544 PP

>> TIGR03797  NHLM_micro_ABC2: NHLM bacteriocin system ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.2   0.0   1.8e-18   1.2e-16     455     674 ..     595     814 ..     585     823 .. 0.80
   2 !   33.9   0.1     4e-11   2.6e-09     467     676 ..    1456    1665 ..    1450    1670 .. 0.85

  Alignments for each domain:
  == domain 1    score: 58.2 bits;  conditional E-value: 1.8e-18
   TIGR03797 455 drvtFrYekdgp.lvLddvslkiepGefvaivGaSGsGKStllrlLLgFekPesGsvlyDGqdlekldvqavRrqlGvVLQngrllsgsil.eniaggas.ltldeaweaarmagleeDikamPmglhTvisegggtlSGGQrQRlliAralvrkPrillfDEATSALDNrtQaiVsesleklkvtR..iviAHRLSTi.rnadrilvleeGrvveqGsyeeLlak 674
                 +r++ ++ +d p   L+d+++++ +Ge  ++ G+ G+GK t + +L g  +P+sG     G+d+++  +  +R   Gv  Q+  ll +  l + +   a   ++d+  +  ++   e  +++  +g+   ++  ++tlSGGQr +l +  al   P+ +l+DE T  +D ++ ++V e +   k+ R  ++  H +      ++ ++v+++G ++ +Gs +eL ak
  MMETSP1137-20121227|6947_1 595 HRLSKTFGSDPPvHALNDLTFEMADGEVTGLLGQNGAGKTTAINILCGLVRPTSGYARVRGHDVRT-HIGTIRSFSGVCAQHDTLLDDLTLaQHVELYAGvKSVDKRRAREQV---EGWLQQ--LGMSEKLNTRADTLSGGQRRKLSLILALLGEPKFVLLDEPTAGMDPHSRRAVWEFVLSSKAERatLLTTHFMDEAdVLCSSLVVVSNGSLAASGSPSELKAK 814
                 566666666665258************************************************986.8*************98877664330444333332333333333333...333444..688899999*********************************************99888888733566788765524588999***************9876 PP

  == domain 2    score: 33.9 bits;  conditional E-value: 4e-11
   TIGR03797  467 lvLddvslkiepGefvaivGaSGsGKStllrlLLgFekPesGsvlyDGqdlekldvqavRrqlGvVLQngrllsg..sileniaggasltldeaweaarmagleeDikam..PmglhTvisegggtlSGGQrQRlliAral.vrkPrillfDEATSALDNrtQaiVsesleklkvtRivi..AHRLSTirn.adrilvleeGrvveqGsyeeLlakeG 676 
                  + +d ++l i +G+  a+ G+ G+GK t + lL g  kP++G  +  G  ++         +l  V+Qn+ + +    ++e+++  ++l+l    +    ++l   i +     gl     + ++ lSGG r +l  A al    P ++++DE T  +D  t + + e + + +  R+v+   H +      a+ri +++ Gr+   Gs ++L + +G
  MMETSP1137-20121227|6947_1 1456 TAVDGLTLAIPNGTCFALLGPNGAGKTTAINLLTGELKPSAGDASIGGVSIH--------ARLSDVFQNTGFCPQlkGLWESLTLRQHLSLVLRLKGHTGTALTAAIAKVeeEYGLREHAHKKAKLLSGGTRRKLSAAMALsCGNPSVVFVDEPTTGVDVGTRRFIWERIREAAKRRVVVltTHYMDEADAlAQRIGIMSGGRLRVLGSPQHLKTVHG 1665
                  5678999************************************999988765........466777777776664225888888888888887777777777777777662247999999*********************4579********************************99855698877653399*****************9988766 PP

>> TIGR02770  nickel_nikD: nickel import ATP-binding protein NikD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0       3.8   2.4e+02      59      91 ..     116     148 ..      80     170 .. 0.75
   2 !   45.2   0.0   2.4e-14   1.6e-12       3     212 ..     611     810 ..     609     822 .. 0.86
   3 !   44.9   0.0   2.9e-14   1.9e-12       2     204 ..    1458    1651 ..    1457    1661 .. 0.84

  Alignments for each domain:
  == domain 1    score: -1.3 bits;  conditional E-value: 3.8
   TIGR02770  59 lrgreialilqnPrsafnPlltikeqlletlka 91 
                  ++++  +++ +P+++f   + i+  ++ +l +
  MMETSP1137-20121227|6947_1 116 AINKKNFIVMRSPKKCFGSFFVISMPMVYSLFI 148
                 45667789**********999998888777655 PP

  == domain 2    score: 45.2 bits;  conditional E-value: 2.4e-14
   TIGR02770   3 qdvnlslkrgkvlalvGesGsGksltalailglldkeltktsGeilldgkelaalalrgreialilqnPrsafnPlltikeqlletlkalekls.kqakelivealeavgLeeaeevlkkypfelsGGmlqRvmialallleaplliaDePttdlDvvvqaevLklleelrekrglgillithDlgvvaeladevavmekGkivergtvke 212
                 +d+ +++  g+v++l+G+ G+Gk+++   + gl       tsG  +++g+++ +     r+++ +  +  + ++ l t+++++       +++  ++a+e++   l++ g++   e l++ +  lsGG   ++ + lall e+ +++ DePt+ +D  ++  v + +  l +k + + ll th +     l   ++v+++G +  +g+++e
  MMETSP1137-20121227|6947_1 611 NDLTFEMADGEVTGLLGQNGAGKTTAINILCGLVR----PTSGYARVRGHDVRTHIGTIRSFSGVCAQHDTLLDDL-TLAQHVELY-AGVKSVDkRRAREQVEGWLQQLGMS---EKLNTRADTLSGGQRRKLSLILALLGEPKFVLLDEPTAGMDPHSRRAVWEFV--LSSKAERATLLTTHFMDEADVLCSSLVVVSNGSLAASGSPSE 810
                 7999*******************987766666655....79*************9888888999988877777775.788887544.4445554499*************99...558999******************************************9986..678888899***********************9988777766 PP

  == domain 3    score: 44.9 bits;  conditional E-value: 2.9e-14
   TIGR02770    2 vqdvnlslkrgkvlalvGesGsGksltalailglldkeltktsGeilldgkelaal...alrgreialilqnPrsafnPlltikeqlletlkaleklskqakelivealeavgLeeaeevlkkypfelsGGmlqRvmialalll.eaplliaDePttdlDvvvqaevLklleelrekrglgillithDlgvvaeladevavmekGki 204 
                  v+++ l + +g + al+G  G+Gk+++    ++ll  el  ++G+  + g ++ a     +  +++++      + +   lt++++l   l+ ++++    ++ i++  e+ gL+e +   +k +  lsGG   ++  a+al + ++++++ DePtt +Dv ++  + + ++e  ++r   ++l th +     la+ + +m+ G++
  MMETSP1137-20121227|6947_1 1458 VDGLTLAIPNGTCFALLGPNGAGKTTA----INLLTGELKPSAGDASIGGVSIHARlsdVF--QNTGFC--PQLKGLWESLTLRQHLSLVLRLKGHTGTALTAAIAKVEEEYGLREHA---HKKAKLLSGGTRRKLSAAMALSCgNPSVVFVDEPTTGVDVGTRRFIWERIREAAKRR--VVVLTTHYMDEADALAQRIGIMSGGRL 1651
                  899*********************975....566677777899999999998876532122..222222..22456666789*************99999999999999*****9655...678899**************866378899******************9999988776..6899*********************97 PP

>> TIGR02633  xylG: D-xylose ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.2   0.0   1.9e-15   1.2e-13       6     222 ..     596     805 ..     592     815 .. 0.84
   2 !   13.9   0.0   4.6e-05     0.003      13      49 ..    1454    1490 ..    1443    1510 .. 0.90
   3 !   26.4   0.0   7.5e-09   4.9e-07     403     482 ..    1573    1652 ..    1557    1655 .. 0.90

  Alignments for each domain:
  == domain 1    score: 48.2 bits;  conditional E-value: 1.9e-15
   TIGR02633   6 givkkfgg...vkaldnidlklraGeivslcGenGaGkstlmkvlsg.vyphGtydGeilfegeelkassirdterkGiviihqeltlvkelsvleniflGneitlkGglmdydamvlrakellrelkldasnvtrpvsdlGlGqqqlveiakalnkqvrllildepsaslteketeilldiirdlkakgvacvyishkleevkavsdtisvirdGqhvat 222
                  + k+fg+   v+al+++++++  Ge+ +l G+nGaGk+t + +l+g v p+  y       g++++++    t r    +  q  tl+ +l++++ + l   +      +d+     +++  l++l ++++ +tr    l +Gq++ + +  al  + ++++ldep+a +  +  + + + +   ka+  a +  +h ++e + ++  + v+ +G   a+
  MMETSP1137-20121227|6947_1 596 RLSKTFGSdppVHALNDLTFEMADGEVTGLLGQNGAGKTTAINILCGlVRPTSGY---ARVRGHDVRTHI--GTIRSFSGVCAQHDTLLDDLTLAQHVELYAGVKS----VDKRRAREQVEGWLQQLGMSEKLNTR-ADTLSGGQRRKLSLILALLGEPKFVLLDEPTAGMDPHSRRAVWEFVLSSKAER-ATLLTTHFMDEADVLCSSLVVVSNGSLAAS 805
                 578999866669***********************************34566555...567788877643..34444445566777999******99977665543....556677778999**************.8999******************************************9998865.88999******************9986665 PP

  == domain 2    score: 13.9 bits;  conditional E-value: 4.6e-05
   TIGR02633   13 gvkaldnidlklraGeivslcGenGaGkstlmkvlsg 49  
                   v+a+d+++l +  G + +l G nGaGk+t + +l+g
  MMETSP1137-20121227|6947_1 1454 AVTAVDGLTLAIPNGTCFALLGPNGAGKTTAINLLTG 1490
                  699******************************9987 PP

  == domain 3    score: 26.4 bits;  conditional E-value: 7.5e-09
   TIGR02633  403 rlsGGnqqkavlakllll.nprvlildeptrGvdvGakyeiyklinqlaqeGvaiivvsselaevlGlsdrvlvigeGklk 482 
                   lsGG ++k   a  l+  np v+ +dept GvdvG++  i+  i + a++ v  ++ +  + e   l++r+ ++  G+l+
  MMETSP1137-20121227|6947_1 1573 LLSGGTRRKLSAAMALSCgNPSVVFVDEPTTGVDVGTRRFIWERIREAAKRRVV-VLTTHYMDEADALAQRIGIMSGGRLR 1652
                  59*******99999887559*****************************99985.56778899***************986 PP

>> TIGR03796  NHLM_micro_ABC1: NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.5   0.0   1.3e-15   8.7e-14     493     703 ..     608     816 ..     596     823 .. 0.83
   2 !   42.1   0.0   1.1e-13   7.3e-12     492     700 ..    1455    1662 ..    1389    1672 .. 0.73

  Alignments for each domain:
  == domain 1    score: 48.5 bits;  conditional E-value: 1.3e-15
   TIGR03796 493 pliedfslslkpGqrvAlvGgsGsGkstiaklvaGlyepwsGeilfDgkpreeiprevlanslalvdqdivlfegtvrdnltlwdetipeedlvrAakDAaihdvilarpggyeaelaegganlsGGqrqRleiARaLvknPsiLilDEatsaLDaetEkaidenl..rrRgctciivaHRLstiR.dcdeiivlerGkvverGtHeellakeg 703
                 + ++d+++++  G+   l G+ G+Gk t   +++Gl +p+sG  ++ g++ ++   ++ + s    + d +l + t+ + + l+   +++ d  rA +  +++  ++  + g++++l+  +  lsGGqr +l +  aL  +P  ++lDE t+ +D++  +a+ e +   +   ++++ +H +      c  ++v+ +G +   G+  el+ak +
  MMETSP1137-20121227|6947_1 608 HALNDLTFEMADGEVTGLLGQNGAGKTTAINILCGLVRPTSGYARVRGHDVRTHIGTIRSFSGVCAQHDTLLDDLTLAQHVELYA-GVKSVDKRRARE--QVEGWLQ--QLGMSEKLNTRADTLSGGQRRKLSLILALLGEPKFVLLDEPTAGMDPHSRRAVWEFVlsSKAERATLLTTHFMDEADvLCSSLVVVSNGSLAASGSPSELKAKYA 816
                 45899********************************************999888888888877889999999999999999996.466666666654..4555554..5578999**********************************************9976223455678888998876531599999999999999999999988654 PP

  == domain 2    score: 42.1 bits;  conditional E-value: 1.1e-13
   TIGR03796  492 apliedfslslkpGqrvAlvGgsGsGkstiaklvaGlyepwsGeilfDgkpreeiprevlanslalvdqdivlfeg.tvrdnltlwdetipeedlvrAakDAaihdvilarpggyeaelaegganlsGGqrqRleiARaLv.knPsiLilDEatsaLDaetEkaidenlrrRgctciiv..aHRLstiRd.cdeiivlerGkvverGtHeella 700 
                     +++++l + +G+  Al G+ G+Gk t   l++G  +p++G+  + g++ ++   +v++n   +  q   l+e+ t+r+ l+l  +    +  +  a  Aai  v  + + g++++ ++ ++ lsGG r +l  A aL   nPs++ +DE t+ +D  t + i e++r+     ++v  +H +      +++i ++  G++   G+ ++l++
  MMETSP1137-20121227|6947_1 1455 VTAVDGLTLAIPNGTCFALLGPNGAGKTTAINLLTGELKPSAGDASIGGVSIHARLSDVFQN-TGFCPQLKGLWESlTLRQHLSLVLRL---KGHTGTALTAAIAKV--EEEYGLREHAHKKAKLLSGGTRRKLSAAMALScGNPSVVFVDEPTTGVDVGTRRFIWERIREAAKRRVVVltTHYMDEADAlAQRIGIMSGGRLRVLGSPQHLKT 1662
                  45689*********************************************999888877766.58889988888765999999997554...444444445555442..4456778889999******************637***************************87766555522566554432245566666666666666666655 PP

>> TIGR01192  chvA: glucan exporter ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.7   0.0   1.9e-13   1.2e-11     349     567 ..     608     822 ..     584     840 .. 0.75
   2 !   39.9   0.0   6.7e-13   4.4e-11     351     561 ..    1458    1665 ..    1421    1677 .. 0.78

  Alignments for each domain:
  == domain 1    score: 41.7 bits;  conditional E-value: 1.9e-13
   TIGR01192 349 qgvrdvsfeakagqtvaivgptgagkttlinllqrvydpksgqilidgvdiatvtreslrksiatvfqdaglln.rsirenirlgredatdeevveaakaaaasdfiek..rlkgydtlvgergnrlsggerqrlaiarailknapilvldeatsaldvetearvkdaidalrknrttfiiahrlst..vreadlvlfldqgrliekgsfdeliqkdgrfakll 567
                   + d++fe+  g+   ++g  gagktt in+l  +  p+sg+  + g d+ t    ++r       q   ll+  ++ + ++l     + +          a++ +e   +  g   ++  r + lsgg+r++l++  a+l +   ++lde t+ +d  +   v + + + + +r+t++ +h +    v  + lv  + +g l   gs +el  k    ++l+
  MMETSP1137-20121227|6947_1 608 HALNDLTFEMADGEVTGLLGQNGAGKTTAINILCGLVRPTSGYARVRGHDVRTHI-GTIRSFSGVCAQHDTLLDdLTLAQHVELYAGVKSVD-------KRRAREQVEGwlQQLGMSEKLNTRADTLSGGQRRKLSLILALLGEPKFVLLDEPTAGMDPHSRRAVWEFVLSSKAERATLLTTHFMDEadVLCSSLV-VVSNGSLAASGSPSELKAKYASGYHLV 822
                 56789*********************************************98754.344444444445555543145555555543322222.......22333334431123466778899*************************************************************8853114444444.578899999999999988876666665 PP

  == domain 2    score: 39.9 bits;  conditional E-value: 6.7e-13
   TIGR01192  351 vrdvsfeakagqtvaivgptgagkttlinllqrvydpksgqilidgvdiatvtreslrksiatvfqdaglln..rsirenirlgredatdeevveaakaaaasdfiekrlkgy..dtlvgergnrlsggerqrlaiarailknap.ilvldeatsaldvetearvkdaidalrknrttfiiahrlstvre.adlvlfldqgrliekgsfdeliqkdg 561 
                  v  +++ +  g   a++gp gagktt inll    +p++g  +i gv i +         ++ vfq++g+    + + e ++l ++ +    +   + +a  +  i k  ++y       ++ + lsgg r++l+ a a+    p ++ +de t+ +dv t   + + i    k r   + +h +      a+ + ++  grl   gs + l   +g
  MMETSP1137-20121227|6947_1 1458 VDGLTLAIPNGTCFALLGPNGAGKTTAINLLTGELKPSAGDASIGGVSIHA--------RLSDVFQNTGFCPqlKGLWESLTLRQHLSLVLRLKGHTGTA-LTAAIAKVEEEYglREHAHKKAKLLSGGTRRKLSAAMALSCGNPsVVFVDEPTTGVDVGTRRFIWERIREAAKRRVVVLTTHYMDEADAlAQRIGIMSGGRLRVLGSPQHLKTVHG 1665
                  566677888999***********************************8865........57788888888762246677777766665555555544444.344455555555115667888999**************98655526779******************************9999876654266677888888888888888765544 PP

>> TIGR02323  CP_lyasePhnK: phosphonate C-P lyase system protein PhnK
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.3   0.0   3.9e-13   2.6e-11       5     220 ..     593     806 ..     590     824 .. 0.79
   2 !   24.1   0.3   7.1e-08   4.6e-06      25     216 ..    1466    1651 ..    1446    1664 .. 0.67

  Alignments for each domain:
  == domain 1    score: 41.3 bits;  conditional E-value: 3.9e-13
   TIGR02323   5 evselsksygsk...kgcr.vsf.lypGevlgivGesGsGkstllkalaarlladaGevtyesrsrelellalseaerrlllrtewGlvhqnprGlrmevsaGanigerllavgarhyGkiraaak...wlekveidaa.rikpaafsGGmqqrlqiarnlvtrprlvfm.eptGGlvsvqarllllrglvrelglaviivth.lavarllaqrllvmkqGrvvesG 220
                 + + lsk++gs    ++++ ++f +  Gev g++G+ G+Gk+t ++ l++ + +++G ++ +  +  +++           +r+  G+  q+   l  +++    +    l  g++   k+ra ++   wl+++ + ++  ++  ++sGG +++l +  +l+ +p++v++ ept G+     r +    l  +++ a+++ th +  a +l++ l+v+ +G +  sG
  MMETSP1137-20121227|6947_1 593 RAHRLSKTFGSDppvHALNdLTFeMADGEVTGLLGQNGAGKTTAINILCGLVRPTSGYARVRGHDVRTHIG---------TIRSFSGVCAQHDTLLD-DLTLAQHVE---LYAGVKSVDKRRAREQvegWLQQLGMSEKlNTRADTLSGGQRRKLSLILALLGEPKFVLLdEPTAGMDPHSRRAVWEFVLSSKAERATLLTTHfMDEADVLCSSLVVVSNGSLAASG 806
                 56789999997622245557899999*******************************99877666444443.........35667799999987554.444444443...3334444444433322236*****998741448899*******************************99999999999999************999***************998888 PP

  == domain 2    score: 24.1 bits;  conditional E-value: 7.1e-08
   TIGR02323   25 ypGevlgivGesGsGkstllkalaarlladaGevtyesrsrelellalseaerrlllrtewGlvhqnprGlrmevsaGanigerllavgarhyGkiraaakwlekvei.daarikpaafsGGmqqrlqiarnlvt.rprlvfm.eptGGlvsvqarllllrglvrelglaviivth.lavarllaqrllvmkqGrv 216 
                    G  ++++G  G+Gk+t ++ l+++l ++aG+++    s +  l   s+         + G+  q  +Gl  +++    ++  l   g+      +a ak  e+  + ++a  k + +sGG +++l  a +l   +p +vf+ ept G+     r++  r         v++ th +  a  laqr+ +m  Gr+
  MMETSP1137-20121227|6947_1 1466 PNGTCFALLGPNGAGKTTAINLLTGELKPSAGDASIGGVSIHARL---SDV------FQNTGFCPQ-LKGLWESLTLRQHLSLVLRLKGHTGTALTAAIAKVEEEYGLrEHAHKKAKLLSGGTRRKLSAAMALSCgNPSVVFVdEPTTGVDVGTRRFIWERIREAAKRRVVVLTTHyMDEADALAQRIGIMSGGRL 1651
                  45889999************************9987665533333...222......222355554.3455555555555554444443322222222233333333312333477889*************97538************74445566665555555566777889999**************9986 PP

>> TIGR01193  bacteriocin_ABC: ABC-type bacteriocin transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.0   0.0   1.5e-13   9.5e-12     488     697 ..     608     813 ..     590     823 .. 0.85
   2 !   26.4   0.0   7.9e-09   5.2e-07     489     704 ..    1457    1671 ..    1451    1675 .. 0.77

  Alignments for each domain:
  == domain 1    score: 42.0 bits;  conditional E-value: 1.5e-13
   TIGR01193 488 evledislkikknekitlvGlsGsGkstlakllvkffqaesGeillngkslkdidkhelrqlinylPqePfifsGsilenlllgakenvsqeeikkaveiaeikddiekl..plGyqtelseeassisgGqkqrlalarallsdskvlildestsnldlltekkivenllklk.dktiifvahrlsvakk.sdkiivldeGkiieqGshkellk 697
                 ++l+d+++++   e++ l+G  G+Gk+t + +l ++  ++sG   + g++++   ++++r +     q+      ++l++l l ++ ++      k+v+    ++++e    +lG++ +l + a ++sgGq+++l+l  all + k ++lde t+ +d    + + e +l+ k +++ ++ +h ++ a+     ++v+++G +  +Gs +el +
  MMETSP1137-20121227|6947_1 608 HALNDLTFEMADGEVTGLLGQNGAGKTTAINILCGLVRPTSGYARVRGHDVRT-HIGTIRSFSGVCAQH-----DTLLDDLTLAQHVEL--YAGVKSVDKRRAREQVEGWlqQLGMSEKLNTRADTLSGGQRRKLSLILALLGEPKFVLLDEPTAGMDPHSRRAVWEFVLSSKaERATLLTTHFMDEADVlCSSLVVVSNGSLAASGSPSELKA 813
                 5799**********************************************975.7899***99999996.....588999999866554..44567778888888888643378**********************************************9999999988765377888999999988753789999********999988865 PP

  == domain 2    score: 26.4 bits;  conditional E-value: 7.9e-09
   TIGR01193  489 vledislkikknekitlvGlsGsGkstlakllvkffqaesGeillngkslkdidkhelrqlinylPqePfifsGsile.nlllgaken.vsqeeikkaveiaeikddieklplGyqtelseeassisgGqkqrlalaralls.dskvlildestsnldlltekkivenllklkd.ktiifvahrlsvakk.sdkiivldeGk..iieqGshkellkenGfyas 704 
                  +++ ++l i +    +l+G  G+Gk+t + ll +  +++ G+ +++g+s++    + + q   + Pq   +++   l   l l  + +  +   +++a  ia ++++      G+  +  ++a  +sgG +++l+ a al   +  v+ +de t+ +d+ t + i e++ +  + + +++ +h ++ a+  +++i +++ G+  ++ + +h + ++  G+  +
  MMETSP1137-20121227|6947_1 1457 AVDGLTLAIPNGTCFALLGPNGAGKTTAINLLTGELKPSAGDASIGGVSIHA-RLSDVFQNTGFCPQLKGLWESLTLRqHLSLVLRLKgHTGTALTAA--IAKVEEE-----YGLREHAHKKAKLLSGGTRRKLSAAMALSCgNPSVVFVDEPTTGVDVGTRRFIWERIREAAKrRVVVLTTHYMDEADAlAQRIGIMSGGRlrVLGSPQHLKTVHGGGYRVE 1671
                  577899********************************************86.456677899*****9999987666514544444330344444444..5555554.....6899999999*****************98625567888******************99875515677889*9998876267888888887224555556666777777655 PP

>> TIGR00956  3a01205: pleiotropic drug resistance family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.4   0.0   2.4e-13   1.6e-11     779     960 ..     610     782 ..     606     790 .. 0.83
   2 !   25.0   0.0   1.1e-08     7e-07     785     960 ..    1464    1631 ..    1339    1641 .. 0.75

  Alignments for each domain:
  == domain 1    score: 40.4 bits;  conditional E-value: 2.4e-13
   TIGR00956 779 LdevdGwvkPGkltALmGasGAGkttLlnvLae..RvttGvitegdrlvngrkldssFqRsiGYvqqqDlHletstvreaLrfsAylRqpkevskkekneyveevikllelesyadAvvGvpGeGLnveqRkrltigveLvAkPklllFlDePtsGLDsqtawsivkllrkladaGqailCtiH 960
                 L++++  +  G++t L+G+ GAGktt +n+L +  R t G+     r  + r+   + +  +G + q+D  l++ t    ++  A +   k+v k+   e ve  ++ l++ +  +    +    L+  qR++l++   L  +P  ++ lDePt+G+D ++  ++ +++   ++a +a l t H
  MMETSP1137-20121227|6947_1 610 LNDLTFEMADGEVTGLLGQNGAGKTTAINILCGlvRPTSGYAR--VRGHDVRTHIGTIRSFSGVCAQHDTLLDDLTLAQHVELYAGV---KSVDKRRAREQVEGWLQQLGMSEKLN----TRADTLSGGQRRKLSLILALLGEP-KFVLLDEPTAGMDPHSRRAVWEFVLS-SKAERATLLTTH 782
                 5666666778*********************975577999987..44444455555777779****************999999876...68999999999**********98765....567789999***************.5788***********99999998864.455566665555 PP

  == domain 2    score: 25.0 bits;  conditional E-value: 1.1e-08
   TIGR00956  785 wvkPGkltALmGasGAGkttLlnvLaeRvttGvitegdrlvngrkldssFqRsiGYvqqqDlHletstvreaLrfsAylRqpkevskkekneyveevikllelesyadAvvGvpGeGLnveqRkrltigveLvAkPklllFlDePtsGLDsqtawsivkllrkladaGqailCtiH 960 
                   +  G+  AL+G  GAGktt +n L++ ++    +  +  v  +++ s    ++G++ q     e  t r  L    +l+     + +     vee   l e   +a        + L+   R++l+ ++ L     +++F+DePt G+D  t   i + +r+ a+    +l t H
  MMETSP1137-20121227|6947_1 1464 AIPNGTCFALLGPNGAGKTTAINLLTGELKPSAGDASIGGVSIHARLSDVFQNTGFCPQLKGLWESLTLRQHLSLVLRLKGHTGTALTAAIAKVEEEYGLRE---HAH----KKAKLLSGGTRRKLSAAMALSCGNPSVVFVDEPTTGVDVGTRRFIWERIREAAKRRVVVLTT-H 1631
                  345699*********************998776666666677777666666789******999********9987766666666666665555555555544...443....2344577789**********87655**************************99886555554.4 PP

>> TIGR01194  cyc_pep_trnsptr: cyclic peptide transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.8   0.0   1.7e-16   1.1e-14     355     541 ..     608     796 ..     592     805 .. 0.74
   2 !   12.9   0.0   9.9e-05    0.0064     359     538 ..    1460    1642 ..    1440    1652 .. 0.66

  Alignments for each domain:
  == domain 1    score: 51.8 bits;  conditional E-value: 1.7e-16
   TIGR01194 355 falGpidlriasGelvyivGenGcGkstliklllGlyipqeGellldGeavsdesrddyrdlfsavfady.ylfddlvqpde..........kkqasldqattylsrleledkvkvedlnystttdlstGqrkrlalvnayleerpvllldewaadqdpafkrvfyeellpdlkrrGktilvishddryfeladrlik 541
                  al  + + +a+Ge+  ++G+nG Gk+t i +l+Gl +p +G   + G+ v  +  +  r  fs v a++  l+ddl   ++          +k+ + +q + +l++l++ +k++        +  ls Gqr++l+l+ a l e   +llde +a  dp  +r  +e +l   k +  t+l     d+   l   l+ 
  MMETSP1137-20121227|6947_1 608 HALNDLTFEMADGEVTGLLGQNGAGKTTAINILCGLVRPTSGYARVRGHDVRTHI-GTIRS-FSGVCAQHdTLLDDLTLAQHvelyagvksvDKRRAREQVEGWLQQLGMSEKLNTR------ADTLSGGQRRKLSLILALLGEPKFVLLDEPTAGMDPHSRRAVWEFVLSS-KAERATLLTTHFMDEADVLCSSLVV 796
                 4677788899****************************************98754.55554.8888887635778875433211221111114556677888889999999887654......45688************************************99988865.4444455554445555555555555 PP

  == domain 2    score: 12.9 bits;  conditional E-value: 9.9e-05
   TIGR01194  359 pidlriasGelvyivGenGcGkstliklllGlyipqeGellldGeavsdesrddyrdl.fs....avfadyylfddlvqpdekkqasldqattylsrleledkvkvedlnystttdlstGqrkrlalvnayleerp.vllldewaadqdpafkrvfyeellpdlkrrGktilvish.ddryfeladr 538 
                   + l i +G    ++G nG Gk+t i ll G  +p  G+  + G ++ +   d +++  f      ++    l ++l     + +  +  a t     ++e+   + + ++  +  ls G r++l+   a     p v+ +de ++  d   +r+ +e +    krr   +++ +h  d+   la+r
  MMETSP1137-20121227|6947_1 1460 GLTLAIPNGTCFALLGPNGAGKTTAINLLTGELKPSAGDASIGGVSIHARLSDVFQNTgFCpqlkGLWESLTLRQHLSLV-LRLKGHTGTALT-AAIAKVEEEYGLREHAHKKAKLLSGGTRRKLSAAMALSCGNPsVVFVDEPTTGVDVGTRRFIWERIREAAKRRV--VVLTTHyMDEADALAQR 1642
                  56799999************************************999988877776532331000333444444433221.122222222222.12345666777777777777788888888887777776666624555888888888888888888877777763..34444413455555555 PP

>> TIGR00957  MRP_assoc_pro: multi drug resistance-associated protein (MRP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.7   0.0   6.1e-09     4e-07     632     854 ..     587     817 ..     579     842 .. 0.75
   2 !   26.3   0.0     4e-09   2.6e-07     652     866 ..    1456    1679 ..    1450    1707 .. 0.75

  Alignments for each domain:
  == domain 1    score: 25.7 bits;  conditional E-value: 6.1e-09
   TIGR00957 632 gegnsitvknatftwardepp.tlngltlsipegalvavvgqvgcgkssllsallaemdkvegkvalkgs.....vayvp..qqawiqndslrenilfgkaleekyykavleacalladle..ilpsgdrteigekgvnlsggqkqrvslaravysdadiyllddplsavdahvakhifekvigpkgllknktrilvthgisylpq.vdviivlsdgkisemgsyqelldrdga 854
                 g g ++  +  + t+  d p  +ln lt+++ +g +  ++gq g gk++ +  l + +    g   ++g      +  +        q d+l +++ + +++e     + ++      ++e  +   g   ++  +   lsggq++++sl  a+  +    lld+p + +d h  + ++e v+  k   ++++ +l th +         ++v+s+g ++  gs  el ++  +
  MMETSP1137-20121227|6947_1 587 GAGAAVRAHRLSKTFGSDPPVhALNDLTFEMADGEVTGLLGQNGAGKTTAINILCGLVRPTSGYARVRGHdvrthIGTIRsfSGVCAQHDTLLDDLTLAQHVELYAGVKSVDKRRAREQVEgwLQQLGMSEKLNTRADTLSGGQRRKLSLILALLGEPKFVLLDEPTAGMDPHSRRAVWEFVLSSK---AERATLLTTHFMDEADVlCSSLVVVSNGSLAASGSPSELKAKYAS 817
                 455666666666677666553479***************************9999999888888888775211112222211334568888888888887777655444455444444554323445777778889999********************************************987...6889999**9776544314557999*********99999877655 PP

  == domain 2    score: 26.3 bits;  conditional E-value: 4e-09
   TIGR00957  652 ptlngltlsipegalvavvgqvgcgkssllsallaemdkvegkvalkgsvayvpqqawiqn.......dslrenilfgkaleekyykavleacalladleilp..sgdrteigekgvnlsggqkqrvslaravy.sdadiyllddplsavdahvakhifekvigpkgllknktrilvthgisylpq.vdviivlsdgkisemgsyqelldrdg.afaeflrtyasae 866 
                   +++gltl ip+g+  a++g+ g gk++ +  l +e++   g  ++ g   +       qn       + l e + + ++l      +     al a +  +    g r    +k   lsgg ++++s a a+   +  + ++d+p + vd    + i+e++       k +  +l th +      ++ i ++s+g++  +gs q+l   +g  +   l++ a+ae
  MMETSP1137-20121227|6947_1 1456 TAVDGLTLAIPNGTCFALLGPNGAGKTTAINLLTGELKPSAGDASIGGVSIHARLSDVFQNtgfcpqlKGLWESLTLRQHLSLVLRLKGHTGTALTAAIAKVEeeYGLREHAHKKAKLLSGGTRRKLSAAMALScGNPSVVFVDEPTTGVDVGTRRFIWERIR---EAAKRRVVVLTTHYMDEADAlAQRIGIMSGGRLRVLGSPQHLKTVHGgGYRVELKAEAEAE 1679
                  5689*********************************998888777775555444444444111111155677777777777665555556667766665554115889999999999**************8625889999******************985...456788888999998766541456889*************998766514555555555555 PP

>> TIGR01271  CFTR_protein: cystic fibrosis transmembrane conductor regulator (CFTR)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.2   0.0   1.7e-08   1.1e-06    1234    1429 ..     609     802 ..     591     826 .. 0.80
   2 !   11.7   0.0    0.0001    0.0066     444     605 ..    1460    1628 ..    1452    1664 .. 0.69

  Alignments for each domain:
  == domain 1    score: 24.2 bits;  conditional E-value: 1.7e-08
   TIGR01271 1234 vlqdlsfsveagqrvgllgrtgsgkstllsallrlls.tegeiqidgvswnsvtlqkwrkafgvipqkvfilsg.tfrknldpyeqysdeeiwkvaeevglksvieq..fpdkldfvlvdggyvlsnghkqlmclarsilskakillldepsafldpvtlqiirktlkqafsnctvilsehrv.eallecqqflviegssv 1429
                   l+dl+f +  g+  gllg+ g+gk+t +  l  l+  t g  ++ g       + + r   gv  q+  +l   t+ + ++ y+     +  +  e+v     ++q  + +kl          ls g ++ + l  ++l   k +lldep+a +dp + + +   +  + ++ + +l+ h + ea + c +++v+ + s+
  MMETSP1137-20121227|6947_1  609 ALNDLTFEMADGEVTGLLGQNGAGKTTAINILCGLVRpTSGYARVRGHDVR-THIGTIRSFSGVCAQHDTLLDDlTLAQHVELYAGVKSVDKRRAREQVE--GWLQQlgMSEKL----NTRADTLSGGQRRKLSLILALLGEPKFVLLDEPTAGMDPHSRRAVWEFVLSSKAERATLLTTHFMdEADVLCSSLVVVSNGSL 802 
                  5899***********************999999987548999999997765.467889999999999877765437888888888777666666666664..334440134454....4556689*********************************9999999999999999889988877467889999999887766 PP

  == domain 2    score: 11.7 bits;  conditional E-value: 0.0001
   TIGR01271  444 nislklekgqllavagstgsgkssllmmilgelepsegkikhsg.....ris.......fspqvswimpg.tikdniifglsydeyrytsvikac.qleediallaekdktvlgeggitlsggqrarislaravyk.dadlylldspfsyldvvtekeifesclckllanktrilvt 605 
                   ++l + +g  +a+ g  g+gk++ + ++ gel+ps g     g     r+s       f+pq+  +    t+++ + + l    +  t++  a  ++ee+  l  +  k         lsgg r ++s a a+   +  + ++d p + +dv t + i+e+      a+k r++v 
  MMETSP1137-20121227|6947_1 1460 GLTLAIPNGTCFALLGPNGAGKTTAINLLTGELKPSAGDASIGGvsihaRLSdvfqntgFCPQLKGLWESlTLRQHLSLVLRLKGHTGTALTAAIaKVEEEYGLREHAHK-----KAKLLSGGTRRKLSAAMALSCgNPSVVFVDEPTTGVDVGTRRFIWERIR---EAAKRRVVVL 1628
                  57788999****************************99765433222225444444444777777655433788888888888888888777764256666555443333.....3456999*********9997526688999*************9999964...3455555543 PP

>> TIGR00954  3a01203: peroxysomal long chain fatty acyl transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   0.0   8.6e-05    0.0056     469     617 ..     610     759 ..     607     781 .. 0.85
   2 !   10.9   0.0   0.00035     0.023     469     628 ..    1458    1619 ..    1451    1630 .. 0.71

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 8.6e-05
   TIGR00954 469 ieeLsfevksGnhlLiiGPnGcGKsslfRilgel.WPvygglltkpeegklFyvPqrPYmslgtlRdqiiYPdssedfkerglsdkdLeqiLeevkLedllereggwdavqdWkdvLsgGekqRiamARlfyHkPkfavLDEctsAvsvd 617
                 +++L+fe+ +G+   ++G nG GK     il +l  P+ g  +   ++ +      r + ++ +  d ++   +  +  e   + k + +     ++e  l++ g  + ++   d LsgG++ ++++   +   Pkf++LDE t+ + + 
  MMETSP1137-20121227|6947_1 610 LNDLTFEMADGEVTGLLGQNGAGKTTAINILCGLvRPTSGYARVRGHDVRTHIGTIRSFSGVCAQHDTLLDDLTLAQHVELYAGVKSVDKRRAREQVEGWLQQLGMSEKLNTRADTLSGGQRRKLSLILALLGEPKFVLLDEPTAGMDPH 759
                 589***************************9998359988777777777777777799999999999999888888888887777777777777788899999999999**********************************9877665 PP

  == domain 2    score: 10.9 bits;  conditional E-value: 0.00035
   TIGR00954  469 ieeLsfevksGnhlLiiGPnGcGKsslfRil.gelWPvyg.........glltkpeegklFyvPqrPYmslg.tlRdqiiYPdssedfkerglsdkdLeqiLeevkLedllereggwdavqdWkdvLsgGekqRiamAR.lfyHkPkfavLDEctsAvsvdvEdklyelake 628 
                  ++ L++ +++G+   ++GPnG GK     +l gel P  g           +  +  ++  + Pq   +    tlR+ +     s  ++ +g +   L++ + +v+ e+ l++       +    +LsgG + +++ A  l    P  + +DE t  v v     ++e ++e
  MMETSP1137-20121227|6947_1 1458 VDGLTLAIPNGTCFALLGPNGAGKTTAINLLtGELKPSAGdasiggvsiHARLSDVFQNTGFCPQLKGLWESlTLRQHL-----SLVLRLKGHTGTALTAAIAKVEEEYGLREHA-----HKKAKLLSGGTRRKLSAAMaLSCGNPSVVFVDEPTTGVDVGTRRFIWERIRE 1619
                  788*********************9766665489***999999975555444445555566888876666666888765.....4556667777777887777777666665443.....3345677888777776553255677888888888877777777777777666 PP

>> TIGR03499  FlhF: flagellar biosynthesis protein FlhF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.1       0.3        19     198     215 ..     620     637 ..     611     643 .. 0.86
   2 !   10.4   0.2    0.0016       0.1     197     219 ..    1467    1489 ..    1461    1506 .. 0.79

  Alignments for each domain:
  == domain 1    score: 2.9 bits;  conditional E-value: 0.3
   TIGR03499 198 ggviaLvGptGvGKTTTl 215
                 g v  L+G+ G GKTT +
  MMETSP1137-20121227|6947_1 620 GEVTGLLGQNGAGKTTAI 637
                 56888***********97 PP

  == domain 2    score: 10.4 bits;  conditional E-value: 0.0016
   TIGR03499  197 kggviaLvGptGvGKTTTlAKLA 219 
                  +g ++aL+Gp G GKTT +  L 
  MMETSP1137-20121227|6947_1 1467 NGTCFALLGPNGAGKTTAINLLT 1489
                  6779*************996665 PP

>> TIGR00041  DTMP_kinase: thymidylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   0.0      0.09       5.8      11      33 ..     627     649 ..     619     692 .. 0.77
   2 ?    6.1   0.0     0.028       1.8      10      30 ..    1474    1494 ..    1467    1501 .. 0.83

  Alignments for each domain:
  == domain 1    score: 4.4 bits;  conditional E-value: 0.09
   TIGR00041  11 GidGaGKTtqlellkkllkeegl 33 
                 G +GaGKTt++++l  l++  + 
  MMETSP1137-20121227|6947_1 627 GQNGAGKTTAINILCGLVRPTSG 649
                 779***********999888433 PP

  == domain 2    score: 6.1 bits;  conditional E-value: 0.028
   TIGR00041   10 EGidGaGKTtqlellkkllke 30  
                   G +GaGKTt+++ll   lk 
  MMETSP1137-20121227|6947_1 1474 LGPNGAGKTTAINLLTGELKP 1494
                  599************988876 PP

>> TIGR00064  ftsY: signal recognition particle-docking protein FtsY
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   0.0     0.061         4      79      99 ..     620     640 ..     603     648 .. 0.82
   2 ?    4.6   0.1     0.053       3.5      81     103 ..    1470    1492 ..    1452    1502 .. 0.84

  Alignments for each domain:
  == domain 1    score: 4.4 bits;  conditional E-value: 0.061
   TIGR00064  79 pnvillvGvNGvGKTttiaKl 99 
                   v  l G NG+GKTt+i  l
  MMETSP1137-20121227|6947_1 620 GEVTGLLGQNGAGKTTAINIL 640
                 5678899**********9766 PP

  == domain 2    score: 4.6 bits;  conditional E-value: 0.053
   TIGR00064   81 villvGvNGvGKTttiaKlakll 103 
                   + l G NG+GKTt+i  l+  l
  MMETSP1137-20121227|6947_1 1470 CFALLGPNGAGKTTAINLLTGEL 1492
                  57899***********9887665 PP

>> TIGR00630  uvra: excinuclease ABC subunit A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.0     0.032       2.1     821     865 ..     718     759 ..     682     818 .. 0.71
   2 ?    2.5   0.0      0.11         7     825     866 ..    1570    1609 ..    1564    1660 .. 0.68

  Alignments for each domain:
  == domain 1    score: 4.2 bits;  conditional E-value: 0.032
   TIGR00630 821 klGqpattLsGGeaqrvkLakeLskrstgktlyilDePttGLhfd 865
                 kl   a tLsGG  qr kL+  L    +   + +lDePt+G+  +
  MMETSP1137-20121227|6947_1 718 KLNTRADTLSGG--QRRKLSLILALLGE-PKFVLLDEPTAGMDPH 759
                 556667777777..45555555544333.3455677777776544 PP

  == domain 2    score: 2.5 bits;  conditional E-value: 0.11
   TIGR00630  825 pattLsGGeaqrvkLakeLskrstgktlyilDePttGLhfdD 866 
                  +a+ LsGG  +++  a+ L     +  +  +DePttG+ +  
  MMETSP1137-20121227|6947_1 1570 KAKLLSGGTRRKLSAAMAL--SCGNPSVVFVDEPTTGVDVGT 1609
                  6788999976555555555..5566788889*****987654 PP

>> TIGR00929  VirB4_CagE: type IV secretion/conjugal transfer ATPase, VirB4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   0.1     0.026       1.7     440     458 ..     623     641 ..     617     647 .. 0.91
   2 ?    3.1   0.1     0.072       4.7     442     460 ..    1473    1491 ..    1467    1497 .. 0.87

  Alignments for each domain:
  == domain 1    score: 4.5 bits;  conditional E-value: 0.026
   TIGR00929 440 TlIfGptgsGKTvllnfll 458
                 T ++G++g+GKT+ +n+l+
  MMETSP1137-20121227|6947_1 623 TGLLGQNGAGKTTAINILC 641
                 5679**************9 PP

  == domain 2    score: 3.1 bits;  conditional E-value: 0.072
   TIGR00929  442 IfGptgsGKTvllnfllaq 460 
                  ++Gp+g+GKT+ +n+l  +
  MMETSP1137-20121227|6947_1 1473 LLGPNGAGKTTAINLLTGE 1491
                  78************99765 PP

>> TIGR01069  mutS2: MutS2 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   0.0    0.0091      0.59     391     445 ..     732     784 ..     719     793 .. 0.88

  Alignments for each domain:
  == domain 1    score: 6.1 bits;  conditional E-value: 0.0091
   TIGR01069 391 kniseiLkkldensLvllDElgaGTDpdegsaLaislLeklakqnalvlitTHyk 445
                  ++s iL  l e+  vllDE  aG Dp+   a    +L    k +  +l tTH+ 
  MMETSP1137-20121227|6947_1 732 RKLSLILALLGEPKFVLLDEPTAGMDPHSRRAVWEFVLSS--KAERATLLTTHFM 784
                 578999999*************************999986..66778999***85 PP

>> TIGR00606  rad50: rad50
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.3      0.68        44      31      48 ..     623     640 ..     620     644 .. 0.87
   2 ?    4.0   0.1     0.025       1.6      30      48 ..    1470    1488 ..    1467    1500 .. 0.85
   3 ?   -3.3   0.0         4   2.6e+02    1220    1237 ..    1589    1606 ..    1582    1608 .. 0.85

  Alignments for each domain:
  == domain 1    score: -0.7 bits;  conditional E-value: 0.68
   TIGR00606  31 tllvGPnGaGkttiieal 48 
                 t l G nGaGktt i+ l
  MMETSP1137-20121227|6947_1 623 TGLLGQNGAGKTTAINIL 640
                 6789***********987 PP

  == domain 2    score: 4.0 bits;  conditional E-value: 0.025
   TIGR00606   30 ltllvGPnGaGkttiieal 48  
                  +  l GPnGaGktt i+ l
  MMETSP1137-20121227|6947_1 1470 CFALLGPNGAGKTTAINLL 1488
                  55689***********976 PP

  == domain 3    score: -3.3 bits;  conditional E-value: 4
   TIGR00606 1220 fclnCgiialdePttnld 1237
                   c+n +++ +dePtt +d
  MMETSP1137-20121227|6947_1 1589 SCGNPSVVFVDEPTTGVD 1606
                  59999**********988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1912 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       298  (0.0726475); expected 82.0 (0.02)
Passed bias filter:                      153  (0.0372989); expected 82.0 (0.02)
Passed Vit filter:                        85  (0.0207216); expected 4.1 (0.001)
Passed Fwd filter:                        63  (0.0153584); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              63  [number of targets reported over threshold]
# CPU time: 3.60u 0.24s 00:00:03.84 Elapsed: 00:00:02.57
# Mc/sec: 981.96
//
Query:       MMETSP1137-20121227|6948_1  [L=119]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.027   11.2   0.1      0.032   11.0   0.1    1.1  1  TIGR02500 type_III_yscD: type III secretion apparatus protein, YscD/HrpQ family
      0.029   12.0   0.0      0.034   11.7   0.0    1.1  1  TIGR00295 TIGR00295: TIGR00295 family protein


Domain annotation for each model (and alignments):
>> TIGR02500  type_III_yscD: type III secretion apparatus protein, YscD/HrpQ family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.1   1.6e-05     0.032     287     336 ..       3      53 ..       1      65 [. 0.85

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 1.6e-05
   TIGR02500 287 qldslLad.agLkgvvtvylsgeviqlsGdLdaeqrealdevlaalrqrlq 336
                 +l +lL++  gLk v++   +g vi   G++d++ +++l+++ a++ q ++
  MMETSP1137-20121227|6948_1   3 TLPALLQQlSGLKAVLVCDQEGAVILRGGEIDDKVQRSLQRMAATFTQMNE 53 
                 66677766469***********999999******************99865 PP

>> TIGR00295  TIGR00295: TIGR00295 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   1.7e-05     0.034      66     121 ..      23      79 ..      14     102 .. 0.88

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 1.7e-05
   TIGR00295  66 kgaeilrklGvdekvvriaerhvgaGin.keeakklGliPkdylPetleekivafad 121
                 +ga ilr+  +d+kv r  +r  ++  + +e+a+klG+  ++++    e  +v +a 
  MMETSP1137-20121227|6948_1  23 EGAVILRGGEIDDKVQRSLQRMAATFTQmNEQANKLGFGRNKHMVAFHESSVVLHAS 79 
                 799****************9976654432689*****************99999985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (119 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       168  (0.0409556); expected 82.0 (0.02)
Passed bias filter:                      135  (0.0329108); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.17u 0.18s 00:00:00.35 Elapsed: 00:00:00.43
# Mc/sec: 365.27
//
Query:       MMETSP1137-20121227|6949_1  [L=457]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (457 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        55  (0.0134081); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.17s 00:00:00.48 Elapsed: 00:00:00.45
# Mc/sec: 1340.42
//
Query:       MMETSP1137-20121227|6950_1  [L=100]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (100 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       107  (0.0260848); expected 82.0 (0.02)
Passed bias filter:                      101  (0.0246221); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.15s 00:00:00.29 Elapsed: 00:00:00.33
# Mc/sec: 399.97
//
Query:       MMETSP1137-20121227|6951_1  [L=547]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (547 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       119  (0.0290102); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.16s 00:00:00.54 Elapsed: 00:00:01.12
# Mc/sec: 638.92
//
Query:       MMETSP1137-20121227|6953_1  [L=320]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (320 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        85  (0.0207216); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.18s 00:00:00.44 Elapsed: 00:00:00.44
# Mc/sec: 959.92
//
Query:       MMETSP1137-20121227|6954_1  [L=223]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.5e-05   20.6   2.8    6.5e-05   20.6   2.0    2.0  2  TIGR03042 PS_II_psbQ_bact: photosystem II protein PsbQ
  ------ inclusion threshold ------
       0.01   12.4   0.1      0.015   11.9   0.1    1.2  1  TIGR01241 FtsH_fam: ATP-dependent metallopeptidase HflB
      0.012   13.7   0.0      0.026   12.7   0.0    1.6  1  TIGR02811 formate_TAT: formate dehydrogenase region TAT target
      0.038   12.3   0.8      0.069   11.4   0.5    1.5  1  TIGR01409 TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence


Domain annotation for each model (and alignments):
>> TIGR03042  PS_II_psbQ_bact: photosystem II protein PsbQ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.1      0.51   5.2e+02       2      25 ..      22      47 ..      21      56 .. 0.59
   2 !   20.6   2.0   6.3e-08   6.5e-05      81     141 ..     150     210 ..      58     211 .. 0.86

  Alignments for each domain:
  == domain 1    score: -1.7 bits;  conditional E-value: 0.51
   TIGR03042  2 rrlasllLvlvltl.L.vscsgpaaa 25
                r+++++++ l+ +  L ++ s p+++
  MMETSP1137-20121227|6954_1 22 RSIFNFCILLACAEgLrLAASIPTSK 47
                78888888877654431333555554 PP

  == domain 2    score: 20.6 bits;  conditional E-value: 6.3e-08
   TIGR03042  81 emtylnqsLlpkdkkeakklakelkedLeklDeAAklqdkseaqkayqevaadldayldll 141
                  ++++ ++L++ d+++  +l+k++ +dL++lD+ Ak+ dk ++    +++++++ ++++l 
  MMETSP1137-20121227|6954_1 150 SIESIINELDAADRERGAALNKQILSDLKQLDKLAKNGDKDAVYVISAQLRQHVLDFAKLA 210
                 478999***********************************99999999999988888876 PP

>> TIGR01241  FtsH_fam: ATP-dependent metallopeptidase HflB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.1   1.4e-05     0.015     153     223 ..     154     220 ..     144     222 .. 0.79

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 1.4e-05
   TIGR01241 153 fiDeiDavGrkrgaglgggndereqtLnqlLvemDGfetnegvivlaatnrpdvLDkaLlrPGrfDrqvvv 223
                  i+e+Da  r+rga+l +        L ql   +   +++++v v++a  r  vLD a l P r+  +  v
  MMETSP1137-20121227|6954_1 154 IINELDAADRERGAALNKQILS---DLKQL-DKLAKNGDKDAVYVISAQLRQHVLDFAKLAPARLGEKFGV 220
                 489***********99874444...44443.3444556799***********************8776655 PP

>> TIGR02811  formate_TAT: formate dehydrogenase region TAT target
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   2.5e-05     0.026       7      37 ..      53      83 ..      48     105 .. 0.74

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 2.5e-05
   TIGR02811  7 adlsRRdLLkglavgaaagavaaatgrvasa 37
                + +sRR +L g+++++a +++       a+a
  MMETSP1137-20121227|6954_1 53 SSPSRRAFLSGIGIVSATAVMLQPAAVEAAA 83
                679*************999876544433333 PP

>> TIGR01409  TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.5   6.7e-05     0.069       2      21 ..      56      75 ..      55      83 .. 0.83

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 6.7e-05
   TIGR01409  2 sRRdFLkaaaaagaaaglgl 21
                sRR FL + +++ a+a+   
  MMETSP1137-20121227|6954_1 56 SRRAFLSGIGIVSATAVMLQ 75
                9***************9953 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (223 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       154  (0.0375427); expected 82.0 (0.02)
Passed bias filter:                      114  (0.0277913); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.22u 0.14s 00:00:00.36 Elapsed: 00:00:00.36
# Mc/sec: 817.60
//
Query:       MMETSP1137-20121227|6955_1  [L=170]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (170 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        22  (0.00536324); expected 82.0 (0.02)
Passed bias filter:                       19  (0.00463189); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.32
# Mc/sec: 701.19
//
Query:       MMETSP1137-20121227|6956_1  [L=249]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0047   15.1   0.0      0.013   13.6   0.0    1.7  1  TIGR01807 CM_P2: chorismate mutase


Domain annotation for each model (and alignments):
>> TIGR01807  CM_P2: chorismate mutase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   0.0   3.2e-06     0.013      41      60 ..       6      25 ..       2      34 .. 0.88

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 3.2e-06
   TIGR01807 41 viYRPeREaavlrrlkelnk 60
                ++YRPeR +++  r+ke+n 
  MMETSP1137-20121227|6956_1  6 TMYRPERSLWIWDRIKETND 25
                57***************995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (249 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       118  (0.0287665); expected 82.0 (0.02)
Passed bias filter:                      101  (0.0246221); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.21u 0.14s 00:00:00.35 Elapsed: 00:00:00.37
# Mc/sec: 888.25
//
Query:       MMETSP1137-20121227|6957_1  [L=233]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (233 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        69  (0.0168211); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.15s 00:00:00.35 Elapsed: 00:00:00.32
# Mc/sec: 961.05
//
Query:       MMETSP1137-20121227|6959_1  [L=296]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (296 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        57  (0.0138957); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.17s 00:00:00.40 Elapsed: 00:00:00.32
# Mc/sec: 1220.90
//
Query:       MMETSP1137-20121227|6960_1  [L=333]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00055   16.7   0.1     0.0013   15.5   0.0    1.6  2  TIGR02928 TIGR02928: orc1/cdc6 family replication initiation protein
     0.0076   13.7   0.2      0.013   12.9   0.1    1.4  1  TIGR03263 guanyl_kin: guanylate kinase
     0.0095   13.4   0.0      0.021   12.3   0.0    1.5  1  TIGR02673 FtsE: cell division ATP-binding protein FtsE
  ------ inclusion threshold ------
      0.024   11.0   0.0      0.043   10.1   0.0    1.4  1  TIGR00602 rad24: checkpoint protein rad24


Domain annotation for each model (and alignments):
>> TIGR02928  TIGR02928: orc1/cdc6 family replication initiation protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0      0.52   5.3e+02     327     361 ..      87     121 ..      82     123 .. 0.80
   2 !   15.5   0.0   1.2e-06    0.0013      32      70 ..     169     207 ..     158     216 .. 0.86

  Alignments for each domain:
  == domain 1    score: -3.0 bits;  conditional E-value: 0.52
   TIGR02928 327 vdpltqrrisdllnelemlglveaeekskGrkGrt 361
                 +d  + +++   lne ++l  ++ +++sk+++G +
  MMETSP1137-20121227|6960_1  87 QDGESDNTFLRELNEATLLHNIRVRYNSKDEGGCY 121
                 55667788888899999999999999999999977 PP

  == domain 2    score: 15.5 bits;  conditional E-value: 1.2e-06
   TIGR02928  32 kpilrgsrpsnvliyGktGtGKtavtkkvlkeleeaaee 70 
                 + +++ ++++ ++++G++G GKt + k vlk+l+  +++
  MMETSP1137-20121227|6960_1 169 RLLVSSNESQAIVVSGPSGAGKTETCKLVLKHLAYVTKD 207
                 55678999*************************999887 PP

>> TIGR03263  guanyl_kin: guanylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.9   0.1   1.3e-05     0.013       3      30 ..     179     206 ..     177     219 .. 0.82

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 1.3e-05
   TIGR03263   3 livisgpsGvGKstlvkklleekeelkl 30 
                  iv+sgpsG+GK+  +k +l++   ++ 
  MMETSP1137-20121227|6960_1 179 AIVVSGPSGAGKTETCKLVLKHLAYVTK 206
                 69***************99997666655 PP

>> TIGR02673  FtsE: cell division ATP-binding protein FtsE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.3   0.0   2.1e-05     0.021      26      65 ..     175     214 ..     163     225 .. 0.81

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 2.1e-05
   TIGR02673  26 ekgeflfltGasGaGkttllklllgaekpsrGevevaged 65 
                 ++++ + ++G+sGaGkt   kl+l+++     +v+ ag +
  MMETSP1137-20121227|6960_1 175 NESQAIVVSGPSGAGKTETCKLVLKHLAYVTKDVTAAGMS 214
                 56788899****************9998888888777765 PP

>> TIGR00602  rad24: checkpoint protein rad24
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0   4.2e-05     0.043     104     140 ..     171     207 ..     159     238 .. 0.80

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 4.2e-05
   TIGR00602 104 vLeskkkriLLitGPsGCgKsTvikiLsKelgikvqe 140
                    s++ + + ++GPsG gK+ + k   K l +  ++
  MMETSP1137-20121227|6960_1 171 LVSSNESQAIVVSGPSGAGKTETCKLVLKHLAYVTKD 207
                 55667789999******************99987665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (333 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       282  (0.068747); expected 82.0 (0.02)
Passed bias filter:                      208  (0.050707); expected 82.0 (0.02)
Passed Vit filter:                        54  (0.0131643); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.35u 0.17s 00:00:00.52 Elapsed: 00:00:00.52
# Mc/sec: 845.24
//
Query:       MMETSP1137-20121227|6962_1  [L=392]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (392 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        83  (0.020234); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.13s 00:00:00.41 Elapsed: 00:00:00.56
# Mc/sec: 923.92
//
Query:       MMETSP1137-20121227|6963_1  [L=218]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (218 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       157  (0.038274); expected 82.0 (0.02)
Passed bias filter:                      120  (0.029254); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.17s 00:00:00.40 Elapsed: 00:00:00.59
# Mc/sec: 487.69
//
Query:       MMETSP1137-20121227|6964_1  [L=217]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (217 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        49  (0.0119454); expected 82.0 (0.02)
Passed bias filter:                       44  (0.0107265); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.17s 00:00:00.37 Elapsed: 00:00:00.31
# Mc/sec: 923.92
//
Query:       MMETSP1137-20121227|6965_1  [L=299]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (299 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        91  (0.0221843); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.17s 00:00:00.40 Elapsed: 00:00:00.43
# Mc/sec: 917.78
//
Query:       MMETSP1137-20121227|6966_1  [L=115]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0049   15.1   0.2     0.0068   14.6   0.1    1.2  1  TIGR04104 cxxc_20_cxxc: cxxc_20_cxxc protein


Domain annotation for each model (and alignments):
>> TIGR04104  cxxc_20_cxxc: cxxc_20_cxxc protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.1   1.6e-06    0.0068       2      44 ..       8      50 ..       7      61 .. 0.89

  Alignments for each domain:
  == domain 1    score: 14.6 bits;  conditional E-value: 1.6e-06
   TIGR04104  2 kCknCkekfsykellkslfskkkkikCpnCgekqyltaksrkk 44
                +C  C++     +ll s+    ++++C++C+++q + a  r+ 
  MMETSP1137-20121227|6966_1  8 RCVGCGHFQLVAQLLPSTVGESEYMVCKRCNQRQPCRAHVRRD 50
                6999***999*****999999**************99988876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (115 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       218  (0.0531448); expected 82.0 (0.02)
Passed bias filter:                      149  (0.0363237); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.18u 0.15s 00:00:00.32 Elapsed: 00:00:00.32
# Mc/sec: 474.34
//
Query:       MMETSP1137-20121227|6967_1  [L=219]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (219 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        83  (0.020234); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.16s 00:00:00.38 Elapsed: 00:00:00.56
# Mc/sec: 516.17
//
Query:       MMETSP1137-20121227|6968_1  [L=111]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (111 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        32  (0.00780107); expected 82.0 (0.02)
Passed bias filter:                       31  (0.00755729); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.15s 00:00:00.31 Elapsed: 00:00:00.24
# Mc/sec: 610.45
//
Query:       MMETSP1137-20121227|6969_1  [L=236]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (236 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       232  (0.0565578); expected 82.0 (0.02)
Passed bias filter:                      194  (0.047294); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.19s 00:00:00.43 Elapsed: 00:00:00.36
# Mc/sec: 865.26
//
Query:       MMETSP1137-20121227|6970_1  [L=647]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   3.8e-147  488.3   0.0   6.4e-147  487.6   0.0    1.4  2  TIGR00089 TIGR00089: radical SAM methylthiotransferase, MiaB/RimO family
   1.3e-130  434.1   0.0     2e-130  433.6   0.0    1.3  1  TIGR01574 miaB-methiolase: tRNA-i(6)A37 thiotransferase enzyme MiaB
    4.5e-94  313.9   0.0    5.6e-94  313.5   0.0    1.1  1  TIGR01579 MiaB-like-C: MiaB-like tRNA modifying enzyme
    1.6e-83  279.0   0.0    2.3e-83  278.5   0.0    1.1  1  TIGR01125 TIGR01125: ribosomal protein S12 methylthiotransferase RimO
    2.6e-78  261.5   0.0    3.6e-78  261.0   0.0    1.2  1  TIGR01578 MiaB-like-B: MiaB-like tRNA modifying enzyme, archaeal-type
    1.9e-24   84.1   0.0    2.7e-23   80.3   0.0    2.0  1  TIGR04014 B12_SAM_MJ_0865: B12-binding domain/radical SAM domain protein, MJ_0865 family
    2.9e-18   63.7   0.0    4.3e-18   63.1   0.0    1.2  1  TIGR04013 B12_SAM_MJ_1487: B12-binding domain/radical SAM domain protein, MJ_1487 family
    6.7e-11   39.5   0.0    3.6e-10   37.1   0.0    2.1  2  TIGR03471 HpnJ: hopanoid biosynthesis associated radical SAM protein HpnJ
    3.5e-08   30.5   0.3    2.1e-05   21.3   0.0    2.3  2  TIGR04107 rSAM_HutW: putative heme utilization radical SAM enzyme HutW
    6.8e-07   26.5   0.0    2.1e-05   21.7   0.0    2.2  2  TIGR03994 rSAM_HemZ: coproporphyrinogen dehydrogenase HemZ
    0.00013   18.5   0.1      0.014   11.8   0.0    2.2  2  TIGR03904 SAM_YgiQ: uncharacterized radical SAM protein YgiQ
    0.00014   18.9   0.0    0.00024   18.2   0.0    1.3  1  TIGR01212 TIGR01212: radical SAM protein, TIGR01212 family
    0.00045   17.0   0.1     0.0007   16.3   0.1    1.4  1  TIGR00538 hemN: oxygen-independent coproporphyrinogen III oxidase
     0.0022   14.7   0.0      0.024   11.3   0.0    2.0  2  TIGR02026 BchE: magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase
     0.0048   14.0   0.4      0.041   10.9   0.3    2.1  1  TIGR04167 rSAM_SeCys: radical SAM/Cys-rich domain protein
  ------ inclusion threshold ------
      0.028   11.3   0.2      0.059   10.3   0.0    1.6  2  TIGR00539 hemN_rel: putative oxygen-independent coproporphyrinogen III oxidase
      0.039   11.4   0.1      0.068   10.7   0.0    1.3  1  TIGR03963 rSAM_QueE_Clost: putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE


Domain annotation for each model (and alignments):
>> TIGR00089  TIGR00089: radical SAM methylthiotransferase, MiaB/RimO family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.9   0.0         4   9.6e+02       9      22 ..      58      71 ..      55      79 .. 0.80
   2 !  487.6   0.0  2.6e-149  6.4e-147       2     421 ..     225     645 ..     224     647 .] 0.98

  Alignments for each domain:
  == domain 1    score: -3.9 bits;  conditional E-value: 4
   TIGR00089  9 CqmNeadsevmagl 22
                CqmN ad+   +++
  MMETSP1137-20121227|6970_1 58 CQMNAADARLTREK 71
                *******9887766 PP

  == domain 2    score: 487.6 bits;  conditional E-value: 2.6e-149
   TIGR00089   2 vyietyGCqmNeadsevmaglLkeagyevtedeeeADvviiNTCavrekaeekviselkelaklkkk...akivvaGClaqkekeellkekpevdivlgtqeverllelieeaeekekevveelekekleelprsrseeklrafikiqeGCdkkCtyCivpsaRGrerSrslekileevkelvskgvkEivLlgqnvnaYGkdlegkskladLlkelekiegierirvtslhpkdvtdelieliaeeekvlkflhlplQsgsdeiLkrMrRkytreeyleiveklrakvpdvalstdiIVGFPgEteedFeetldlveevkfdklhvfkYspregtpaaelkdqvpeevkkeRlerLkelqkeiskeknkkyvGktlevLveeeekkkegelsgrtennklvvvegkeekeligkfvkvkike 421
                 +++ ++GCqmN+ad+e+m+g+L++ g+ +++d+++A v+++NTC++r++ae+kv+s+l+  a +k+k   + ivvaGC+aq+e+e ll+++pe+d+v+g+q ++r+ +l+e + ++ ++vv + + + +e++++++++++++a++++++GC+++C+yC+vp++RG e+Sr+ e+i +e++elv++g++E++Llgqn++a+G+dl  k+++a+Ll+ ++ +eg +r+r++++hp+ +++++++++a+ + +++++h+p+Qsg+de+L++M+R+yt+++y++iv+++ra++pd+a+++d IVGFPgEtee+F++tl+l+eevkfd+l+++ Yspr++tpaa +k+qv+ee+k +Rl+r+++l++  + e++++y+G++ evLve+++++ + +++gr+++ +++++ g+ ++ l gk+v vki+e
  MMETSP1137-20121227|6970_1 225 YAMDSMGCQMNTADAERMEGQLQAMGFSKATDPKKAQVIVLNTCSIRDHAEQKVYSYLGPHAARKQKgedLAIVVAGCVAQQEGEALLRRVPEIDLVMGPQYANRIGDLLEGVFNG-NQVVATAPTHIMEDVTQPQRQSTVCAWVNVIYGCNERCSYCVVPTTRGAEQSRPRESIRAEIEELVANGYREVTLLGQNIDAWGRDLTPKQTFAELLRDMAGVEGLDRMRFVTSHPRYMSERVVAAVADMPALCEMFHVPFQSGDDEVLRNMERGYTAKRYKQIVDQIRARLPDAAITADAIVGFPGETEEQFQNTLKLMEEVKFDQLNTAAYSPRPHTPAALWKNQVSEEEKMDRLQRINRLAAAHALERRQRYIGRVEEVLVEGRNTRYPSQVKGRNRQGCPIYFDGD-SELLTGKLVPVKITE 645
                 56789******************************************************99999998899********************************************96.67788889899*************************************************************************************************************************************************************************************************************************************************************************************97.5789*********97 PP

>> TIGR01574  miaB-methiolase: tRNA-i(6)A37 thiotransferase enzyme MiaB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  433.6   0.0  8.2e-133    2e-130       3     426 ..     226     645 ..     224     647 .] 0.96

  Alignments for each domain:
  == domain 1    score: 433.6 bits;  conditional E-value: 8.2e-133
   TIGR01574   3 fiktyGCqmnvadsekmadlllakgyeltedveeadvlllntCsvrekaeekvfgelGrfkklkkknadliiGvcGCvaselgekilkrapyvdlvlGtrniarleelieekltdkemvveisseesevaerlaevrnegkiksfvnimeGCdkfCtyCivPytrGeeisrdlddilqevaklaekGvkeitLLGqnvnayrGkdfegktvsfadLleelavkddierirftsshPkdldddlievlakesklvkllhlPvqsGssevLklmkrsytreeylelvrklkeavPnvslstdiivgfPgeteedfeetldllrevefdsafsfkyskregtpaadmkddvpeevkkerLqrlqalvneialkkvkkregktlkvLveeesrnnpeelaGrteknklvnleGkkd.liGkfvdvkike 426
                  +  +GCqmn ad+e+m++ l+a g++++ d ++a+v++lntCs+r +ae+kv++ lG + + k+k+ dl i v+GCva+++ge +l+r p +dlv+G++  +r+ +l+e ++   ++v       ++++e +++++ ++++ ++vn+++GC++ C+yC+vP trG e sr+ + i  e+++l+++G++e+tLLGqn++a+ G+d    + +fa+Ll+++a +++++r+rf++shP+ +++++++ +a+ + l+++ h+P qsG +evL+ m+r+yt+++y+++v ++++ +P++++++d ivgfPgetee+f++tl+l++ev+fd+  +  ys+r+ tpaa  k++v ee+k +rLqr++ l    al++ ++++g++ +vLve+++ + p+++ Gr  ++  + ++G ++ l Gk+v vki+e
  MMETSP1137-20121227|6970_1 226 AMDSMGCQMNTADAERMEGQLQAMGFSKATDPKKAQVIVLNTCSIRDHAEQKVYSYLGPHAARKQKGEDLAIVVAGCVAQQEGEALLRRVPEIDLVMGPQYANRIGDLLEGVFNGNQVVA---TAPTHIMEDVTQPQRQSTVCAWVNVIYGCNERCSYCVVPTTRGAEQSRPRESIRAEIEELVANGYREVTLLGQNIDAW-GRDLTP-KQTFAELLRDMAGVEGLDRMRFVTSHPRYMSERVVAAVADMPALCEMFHVPFQSGDDEVLRNMERGYTAKRYKQIVDQIRARLPDAAITADAIVGFPGETEEQFQNTLKLMEEVKFDQLNTAAYSPRPHTPAALWKNQVSEEEKMDRLQRINRLAAAHALERRQRYIGRVEEVLVEGRNTRYPSQVKGRNRQGCPIYFDGDSElLTGKLVPVKITE 645
                 57789**********************************************************************************************************966655543...34566777788888889*************************************************************.***976.579********************************************************************************************************************************************************************************************************667********98 PP

>> TIGR01579  MiaB-like-C: MiaB-like tRNA modifying enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  313.5   0.0   2.3e-96   5.6e-94       2     416 .]     228     643 ..     227     643 .. 0.91

  Alignments for each domain:
  == domain 1    score: 313.5 bits;  conditional E-value: 2.3e-96
   TIGR01579   2 etlGCrvNqyeseslkaeliqkgyevvrddekadviiiNtCtVTakadskarklir.rl..krenpkakiivtGCyaqlepkel.aelkevvlvlgnkeKdkiskllsallesavrvkekslveekeveefeevaprfeektrafvkvqdGCnkaCsyCiIpfaRGrsrSvelekvleqvkalvakgykEvvltGvnlssYgedlenglslakLlekilkieglkriRlsSlepeevdeelleliasekklcphlHlslQsgsdkvLkrmrRkytrddilklveklrsvrpelalgtDiIvgfPgEteedfqetlrlvkelelsklHiFpySaRegTkaaamdakveetiakeRvkalkelaekvkqevlkkllgkelevlvekskaee..vltgkseeylkvkvesekkvaagellkvri 416
                  ++GC++N+ ++e ++ +l+++g+ +++d +ka+vi++NtC++  +a++k+ +++  ++  k++  +  i+v+GC+aq+e + l   ++e++lv+g ++ ++i +ll+ +      + ++++++  +    + ++p+ +  + a+v v  GCn++CsyC++p +RG  +S++ e++ +++++lva+gy+Ev l G n+ ++g+dl  ++++a+Ll+++  +egl r+R    +p  + e++++++a  + lc+ +H+  Qsg+d+vL++m+R+yt + ++++v+++r+  p+ a+++D IvgfPgEtee+fq+tl+l++e+++ +l    yS+R++T+aa  +++v e+ + +R++++++la +   e +++++g+ +evlve ++++    + g++ + + + ++++ +   g+l+ v+i
  MMETSP1137-20121227|6970_1 228 DSMGCQMNTADAERMEGQLQAMGFSKATDPKKAQVIVLNTCSIRDHAEQKVYSYLGpHAarKQKGEDLAIVVAGCVAQQEGEALlRRVPEIDLVMGPQYANRIGDLLEGVF-----NGNQVVATAPTHIMEDVTQPQRQSTVCAWVNVIYGCNERCSYCVVPTTRGAEQSRPRESIRAEIEELVANGYREVTLLGQNIDAWGRDLTPKQTFAELLRDMAGVEGLDRMRFVTSHPRYMSERVVAAVADMPALCEMFHVPFQSGDDEVLRNMERGYTAKRYKQIVDQIRARLPDAAITADAIVGFPGETEEQFQNTLKLMEEVKFDQLNTAAYSPRPHTPAALWKNQVSEEEKMDRLQRINRLAAAHALERRQRYIGRVEEVLVEGRNTRYpsQVKGRNRQGCPIYFDGDSELLTGKLVPVKI 643
                 579***************************************************952331133456899***********98751689*******************8554.....22333333333333334456778889*************************************************************************************************************************************************************************************************************************************************99887655677888888888888888778888877765 PP

>> TIGR01125  TIGR01125: ribosomal protein S12 methylthiotransferase RimO
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  278.5   0.0   9.4e-86   2.3e-83       4     423 ..     227     644 ..     225     646 .. 0.94

  Alignments for each domain:
  == domain 1    score: 278.5 bits;  conditional E-value: 9.4e-86
   TIGR01125   4 ivsLGCpknlvDsevllgkLreaGyevvaevedaDvvivntCafiedakeesleailellda.....kkkvivtGClverykeelkeeipevkallGsedveeileaieelesgkdkvaekslieeeevkrvkltprhyaYlkvaeGCnkrCafCiiPklrGklrsrkieeilkeakrLvdegvkeiiliaqdttaYGvDlktdreaklaeLlekLekle.ikWirllYlyPdelvdevielmaesekvlpYlDiPlqhasdkiLklmrrpksaekqldlieklrekvpelvlrstfivGfPgeteedfqeLldfveearldklGvftysdeegtdaaeLpdavpeevkeerlerlmalqqrisakkleelvGkklevlidekeeetdleligrtlaeaPevDgvvyvkgakelvkigdilkvkie 423
                 + s+GC+ n +D+e++ g+L++ G+  +++ ++a v+++ntC+  ++a++   ++++  +       +  ++v GC++++  e l +++pe++ ++G++  + i + +e + +g++ va+ ++  +e+v + + +    a++ v  GCn+rC++C++P  rG ++sr+ e+i +e+++Lv++g +e+ l+ q++ a+G Dl+   ++++aeLl+++  +e    +r++  +P  ++++v+ ++a+ + + + + +P+q  +d++L++m+r++ a++ +++++++r+++p++ + +  ivGfPgetee+fq+ l+ +ee ++d+l    ys+   t aa  +++v ee k +rl+r+ +l++  + ++ ++ +G++ evl+++ +     +++gr  +  P     +y +g +el  +g ++ vki+
  MMETSP1137-20121227|6970_1 227 MDSMGCQMNTADAERMEGQLQAMGFSKATDPKKAQVIVLNTCSIRDHAEQKVYSYLGPHAARkqkgeDLAIVVAGCVAQQEGEALLRRVPEIDLVMGPQYANRIGDLLEGVFNGNQVVATAPTHIMEDVTQPQRQSTVCAWVNVIYGCNERCSYCVVPTTRGAEQSRPRESIRAEIEELVANGYREVTLLGQNIDAWGRDLT--PKQTFAELLRDMAGVEgLDRMRFVTSHPRYMSERVVAAVADMPALCEMFHVPFQSGDDEVLRNMERGYTAKRYKQIVDQIRARLPDAAITADAIVGFPGETEEQFQNTLKLMEEVKFDQLNTAAYSPRPHTPAALWKNQVSEEEKMDRLQRINRLAAAHALERRQRYIGRVEEVLVEGRNTRYPSQVKGRNRQGCP-----IYFDGDSEL-LTGKLVPVKIT 644
                 679*****************************************************98777634444556*******************************************999999999999999999999999*****************************************************************..999***********998778999999********************************************************************************************************************************************************************999888.....555554433.45666666655 PP

>> TIGR01578  MiaB-like-B: MiaB-like tRNA modifying enzyme, archaeal-type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  261.0   0.0   1.5e-80   3.6e-78       4     385 ..     227     619 ..     224     646 .. 0.86

  Alignments for each domain:
  == domain 1    score: 261.0 bits;  conditional E-value: 1.5e-80
   TIGR01578   4 vetyGCalnkadseiiknklkkaGyelvekaeeAdlailntCtVkkktEdkllari.....kelarkgkevvvagcvpkaqkekvkdaesele.vlgvkaierlvelveetlkkkvlersvaktllkevk.v.lknelieiipinqGClskCsyCitkiArGklaSyppEkivekarelvaeGakeikltsqDtaaYGkDiGer..LpeLlrliteiegefrlRVGmmnpknvleildelievfqsekvykfLHlPvqSgsdsvLkemkReytvddfedivekfrerledltlstDiivGfptEtdddfeetlellrklrpekinvtkfspRpgteaaklkrl.dakikkkrskaltklkeevllekkenliGkrekVlvte..egvGevlkded 385
                 +++ GC +n+ad+e ++++l+++G+ +   ++ A++++lntC ++ ++E+k+   +     ++ + +   +vvagcv++++ e+    ++e++ v+g +  +r+++l+e + + +++  + ++ ++++v  + ++  +   +++  GC+++CsyC++   rG  +S+p+E i  ++ elva+G +e+ l +q+  a+G+D+  +   +eLlr +  +eg  r+R    +p ++ e +  +++v + + + ++ H+P qSg+d+vL++m+R yt + +++iv+++r+rl+d +++ D ivGfp+Et+++f++tl+l+++++++++n + +spRp+t+aa  k+    + k +r ++++ l     le ++ +iG+ e+Vlv    +   + +k ++
  MMETSP1137-20121227|6970_1 227 MDSMGCQMNTADAERMEGQLQAMGFSKATDPKKAQVIVLNTCSIRDHAEQKVYSYLgphaaRKQKGEDLAIVVAGCVAQQEGEALLRRVPEIDlVMGPQYANRIGDLLEGVFNGNQVVATAPTHIMEDVTqPqRQSTVCAWVNVIYGCNERCSYCVVPTTRGAEQSRPRESIRAEIEELVANGYREVTLLGQNIDAWGRDLTPKqtFAELLRDMAGVEGLDRMRFVTSHPRYMSERV--VAAVADMPALCEMFHVPFQSGDDEVLRNMERGYTAKRYKQIVDQIRARLPDAAITADAIVGFPGETEEQFQNTLKLMEEVKFDQLNTAAYSPRPHTPAALWKNQvSEEEKMDRLQRINRLAAAHALERRQRYIGRVEEVLVEGrnTRYPSQVKGRN 619
                 6789***********************************************98654211114555555678******************999835788999**********995555555566665554414256667789***********************************************************9876679*************************99876..7888888*******************************************************************************************99876505566779*****************************874333344444444 PP

>> TIGR04014  B12_SAM_MJ_0865: B12-binding domain/radical SAM domain protein, MJ_0865 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.3   0.0   1.1e-25   2.7e-23     159     375 ..     364     582 ..     232     610 .. 0.86

  Alignments for each domain:
  == domain 1    score: 80.3 bits;  conditional E-value: 1.1e-25
   TIGR04014 159 anvyiethrGclGactfcqvPrffGrrirsreleeiveevkelkrkGarrlaisGGtgslygskeaidkeafiellkklsevlGkknlsvPdirvdlvddeileaireyti.GWvff.GiesGsdrilrlmkkGitvdkvleavelare..vgvkvaGsfivgyPgeteedyeatkdlleelelddvfvsiaePiPgtelaelvlelpedenpvfvkhege 375
                   ++++   Gc  +c++c vP   G + +sr+ e+i  e+ el ++G r +++ G     +g +    k+ f ell+ ++ v G + +        +++++++ a+ +      +f+   +sG d +lr+m++G t ++  + v++ r    +  ++   ivg+Pgetee +++t  l+ee+++d +  +   P P t+ a    +++e+e++   +  ++
  MMETSP1137-20121227|6970_1 364 VCAWVNVIYGCNERCSYCVVPTTRGAE-QSRPRESIRAEIEELVANGYREVTLLGQNIDAWGRDL-TPKQTFAELLRDMAGVEGLDRMRFVTSHPRYMSERVVAAVADMPAlCEMFHvPFQSGDDEVLRNMERGYTAKRYKQIVDQIRArlPDAAITADAIVGFPGETEEQFQNTLKLMEEVKFDQLNTAAYSPRPHTPAALWKNQVSEEEKMDRLQRINR 582
                 446788889****************87.8*********************************987.7999********************999**************98651445532679***********************986651167888999****************************************9887777777776655555554 PP

>> TIGR04013  B12_SAM_MJ_1487: B12-binding domain/radical SAM domain protein, MJ_1487 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.1   0.0   1.8e-20   4.3e-18      77     372 ..     283     580 ..     225     590 .. 0.73

  Alignments for each domain:
  == domain 1    score: 63.1 bits;  conditional E-value: 1.8e-20
   TIGR04013  77 Gphasaepe..evlklgfdyvvvGegEetlpellk.aleegedleevkgvalae.....vltgrrkrvdldkyppfseklklfgpiEitRGCpygCayCqtprlfgkkvRHRsiesivkyakelvdkgrkdiRfitpnalaYGskdgvkpnlekveeLLsslkk..kkkkriffGtFPsevRPefvteealelikkyva.nrrlviGaQsgsdrvLkaikRgHtvedvveavelalea..gltpvvDfIlGlPgeteedqeatlelikklvkkgakvhaHtfmpLPgtplenakpsklseevkkelgkl 372
                 Gpha  + +  +++ + + +v+  egE  l+++ + +l  g + +++ g  l+      ++  ++ +  +++    + + ++ + + +  GC  +C+yC +p+  g++   R+ esi    +elv++g +++ ++  n  a+G   + +p+ +   eLL+ +      ++  f+ +      P  ++e++++ +++  a  +  ++  Qsg+d+vL++++Rg t+++  + v++++    +   + D I+G+Pgetee+ ++tl+l++++     +     + p P tp +  k +  +ee  + l+++
  MMETSP1137-20121227|6970_1 283 GPHAARKQKgeDLAIVVAGCVAQQEGEALLRRVPEiDLVMGPQYANRIGDLLEGvfngnQVVATAPTHIMEDVTQPQRQSTVCAWVNVIYGCNERCSYCVVPTTRGAE-QSRPRESIRAEIEELVANGYREVTLLGQNIDAWGR--DLTPK-QTFAELLRDMAGveGLDRMRFVTSH-----PRYMSERVVAAVADMPAlCEMFHVPFQSGDDEVLRNMERGYTAKRYKQIVDQIRARlpDAAITADAIVGFPGETEEQFQNTLKLMEEVKFD--QLNTAAYSPRPHTPAALWKNQVSEEEKMDRLQRI 580
                 56665444311333345556666666666665533123444443333333332222222333333333344444444567899999*******************995.689********************************..55676.5678999999986445666777776.....56788888888888765256789************************99999876433889999***********************9654..5888999999999988777776666666666554 PP

>> TIGR03471  HpnJ: hopanoid biosynthesis associated radical SAM protein HpnJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0       1.6   3.9e+02      92     139 ..     289     336 ..     285     338 .. 0.81
   2 !   37.1   0.0   1.5e-12   3.6e-10     205     384 ..     373     564 ..     366     582 .. 0.71

  Alignments for each domain:
  == domain 1    score: -2.6 bits;  conditional E-value: 1.6
   TIGR03471  92 keanPkvkiglvGakvavepekslkeaeaidfvareefdytikelaeG 139
                 k++  ++ i++ G     e e  l+  ++id+v+  ++   i +l eG
  MMETSP1137-20121227|6970_1 289 KQKGEDLAIVVAGCVAQQEGEALLRRVPEIDLVMGPQYANRIGDLLEG 336
                 5566678888899988889999999999*****999988888887776 PP

  == domain 2    score: 37.1 bits;  conditional E-value: 1.5e-12
   TIGR03471 205 GckskctfclwPqtvgGhkyrtrsaesvieevklak.elfpevkelffdddtftddkeraeeiakklkkl......gvtwscnakan.vdyetlkvlke..nGlrlllvGyesGdqqilknikkGlkvevarkftkdckk.l.GlkvhGtfilGlPgetretirktiefakeldpetiqvslaapyPGt..ely 384
                 Gc+ +c++c+ P t g ++ r r  es+ +e+++ + + + ev  l  + d++  d +  +  a+ l+ +      +    ++++   +    + ++ +  + + ++ v ++sGd+++l+n+++G + ++ ++ +++ +  l   ++  + i+G+Pget+e  ++t++   e++ + ++ +  +p P t   l+
  MMETSP1137-20121227|6970_1 373 GCNERCSYCVVPTTRGAEQSRPR--ESIRAEIEELVaNGYREVTLLGQNIDAWGRDLTPKQTFAELLRDMagveglDRMRFVTSHPRyMSERVVAAVADmpALCEMFHVPFQSGDDEVLRNMERGYTAKRYKQIVDQIRArLpDAAITADAIVGFPGETEEQFQNTLKLMEEVKFDQLNTAAYSPRPHTpaALW 564
                 9****************999887..45666665544044677777777777777665544444444433311110022223333332023333334433226689999**************************999875243689********************************9999999998733455 PP

>> TIGR04107  rSAM_HutW: putative heme utilization radical SAM enzyme HutW
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.0   0.0     0.002      0.48      21      57 ..     345     382 ..     335     409 .. 0.84
   2 !   21.3   0.0   8.8e-08   2.1e-05     156     239 ..     478     562 ..     458     597 .. 0.80

  Alignments for each domain:
  == domain 1    score: 7.0 bits;  conditional E-value: 0.002
   TIGR04107  21 eeelqevwqellaeaekakrllYihiPF.CrkrClfCg 57 
                 ++  +++++++++ +++++ ++++++ + C++rC++C 
  MMETSP1137-20121227|6970_1 345 ATAPTHIMEDVTQPQRQSTVCAWVNVIYgCNERCSYCV 382
                 555677889999999999*******9999********5 PP

  == domain 2    score: 21.3 bits;  conditional E-value: 8.8e-08
   TIGR04107 156 SiGvQsfdtevRrrlgRlddreevlerleeLsa.ldraavviDLlyGLpgqteeiweeDleivaelgldGvdlYaLnllpgtpla 239
                  +  Qs d+ev r++ R    ++  + ++++ a l +aa+ +D + G+pg tee +++ l+ ++e++ d +++ a    p+tp a
  MMETSP1137-20121227|6970_1 478 HVPFQSGDDEVLRNMERGYTAKRYKQIVDQIRArLPDAAITADAIVGFPGETEEQFQNTLKLMEEVKFDQLNTAAYSPRPHTPAA 562
                 5667**************************9752689********************************9999888888888854 PP

>> TIGR03994  rSAM_HemZ: coproporphyrinogen dehydrogenase HemZ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.0     0.056        13      80     131 ..     359     418 ..     341     428 .. 0.63
   2 !   21.7   0.0   8.7e-08   2.1e-05     206     308 ..     482     586 ..     476     614 .. 0.77

  Alignments for each domain:
  == domain 1    score: 2.5 bits;  conditional E-value: 0.056
   TIGR03994  80 dyeeeyslYvgiPF.CptrClYCsFt.......sapiekakkkveeyldallkeleavak 131
                 + +++++ +v + + C  rC+YC          s+p e++++++ee + + ++e++ +++
  MMETSP1137-20121227|6970_1 359 QRQSTVCAWVNVIYgCNERCSYCVVPttrgaeqSRPRESIRAEIEELVANGYREVTLLGQ 418
                 336778888886665********8751122222455556666666666666666666665 PP

  == domain 2    score: 21.7 bits;  conditional E-value: 8.7e-08
   TIGR03994 206 qtmndktLkliGRkHtvedvveafklarelGfd.ninmDlivGLpgetleeveetleevkklaPesltvHalalkrasrlklekekyee.akaeetaemlelaae 308
                 q+ +d++L+++ R +t++  +++ + +r+   d  i  D ivG pget+e++++tl+ +++++ ++l   a + +  +   l k++++e +k++  +++ +laa+
  MMETSP1137-20121227|6970_1 482 QSGDDEVLRNMERGYTAKRYKQIVDQIRARLPDaAITADAIVGFPGETEEQFQNTLKLMEEVKFDQLNTAAYSPRPHTPAALWKNQVSEeEKMDRLQRINRLAAA 586
                 7889********************99998655428****************************999998888877777666666664440344444455555544 PP

>> TIGR03904  SAM_YgiQ: uncharacterized radical SAM protein YgiQ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.8   0.0   5.8e-05     0.014     291     337 ..     362     407 ..     286     413 .. 0.88
   2 !    4.5   0.0    0.0089       2.1     462     527 ..     499     563 ..     476     590 .. 0.77

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 5.8e-05
   TIGR03904 291 eeikfsvtshrGCfGgCsFCaiteHqgriiqsRseesileEvekltk 337
                 +++   v++  GC   Cs+C + + +g   qsR +esi  E+e+l++
  MMETSP1137-20121227|6970_1 362 STVCAWVNVIYGCNERCSYCVVPTTRGAE-QSRPRESIRAEIEELVA 407
                 56667789999***************986.9************9975 PP

  == domain 2    score: 4.5 bits;  conditional E-value: 0.0089
   TIGR03904 462 ekfkekfeklskkagkkqylvpylisahPgctledmvelaeylkklklkpeqvqdftPtPmtlsta 527
                 +++k+  +++  ++  +  +++  i ++Pg t+e+ ++  +++++ k++  +  ++ P P t ++ 
  MMETSP1137-20121227|6970_1 499 KRYKQIVDQIRARL-PDAAITADAIVGFPGETEEQFQNTLKLMEEVKFDQLNTAAYSPRPHTPAAL 563
                 45555555554444.3456778889************************************98864 PP

>> TIGR01212  TIGR01212: radical SAM protein, TIGR01212 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.0   9.9e-07   0.00024     142     209 ..     478     547 ..     432     552 .. 0.85

  Alignments for each domain:
  == domain 1    score: 18.2 bits;  conditional E-value: 9.9e-07
   TIGR01212 142 elGlqtahektlkkinRghdladyveavkkvkkr..gikvcshlivgLPgedreevletakivaeldvdg 209
                  +  q+ +++ l+++ Rg++   y ++v ++++r  +  + +  ivg Pge+ e++ +t+k++ e++ d 
  MMETSP1137-20121227|6970_1 478 HVPFQSGDDEVLRNMERGYTAKRYKQIVDQIRARlpDAAITADAIVGFPGETEEQFQNTLKLMEEVKFDQ 547
                 4568999**********************99998557899***********************9998875 PP

>> TIGR00538  hemN: oxygen-independent coproporphyrinogen III oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.1   2.9e-06    0.0007     145     249 ..     455     562 ..     355     597 .. 0.82

  Alignments for each domain:
  == domain 1    score: 16.3 bits;  conditional E-value: 2.9e-06
   TIGR00538 145 dPrelekevlkalrdeG..fnrlslGvqdfdkevqkavnriqpeelikekleklreagf.esinldliyGlPkqtkesfektlekvlelnPdrlavfnyayvPtvkka 249
                  Pr++ + v+ a+ d     + + +  q  d ev + ++r    +  k+ ++++r      +i  d i G+P  t+e f++tl+ + e++ d+l + +y+  P+  +a
  MMETSP1137-20121227|6970_1 455 HPRYMSERVVAAVADMPalCEMFHVPFQSGDDEVLRNMERGYTAKRYKQIVDQIRARLPdAAITADAIVGFPGETEEQFQNTLKLMEEVKFDQLNTAAYSPRPHTPAA 562
                 57777777777777754113455666799999***********************865416799*******************************9999866655444 PP

>> TIGR02026  BchE: magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.0      0.12        29     154     194 ..     339     378 ..     304     408 .. 0.78
   2 !   11.3   0.0    0.0001     0.024     314     382 ..     490     560 ..     474     600 .. 0.77

  Alignments for each domain:
  == domain 1    score: 1.1 bits;  conditional E-value: 0.12
   TIGR02026 154 eddkivetlaaptirdldklrvdWelvdlkkyiyvplgvrv 194
                 +++++v+t+++  ++d+ + + +  +  + + iy   + r 
  MMETSP1137-20121227|6970_1 339 NGNQVVATAPTHIMEDVTQPQRQSTVCAWVNVIYGC-NERC 378
                 455688888888888888888888888888888865.5443 PP

  == domain 2    score: 11.3 bits;  conditional E-value: 0.0001
   TIGR02026 314 drirkettveenkeairllrkh..dilseaqfivglenetdetleetyrqvldydPdlanwsmytPwpfte 382
                  +++++ t ++ k+ +  +r    d    a  ivg+  et+e++++t++ + + + d+ n   y+P p+t+
  MMETSP1137-20121227|6970_1 490 RNMERGYTAKRYKQIVDQIRARlpDAAITADAIVGFPGETEEQFQNTLKLMEEVKFDQLNTAAYSPRPHTP 560
                 55566666666666666665533366667899**********************************99986 PP

>> TIGR04167  rSAM_SeCys: radical SAM/Cys-rich domain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.9   0.3   0.00017     0.041       4      61 ..     360     417 ..     357     594 .. 0.55

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 0.00017
   TIGR04167   4 rkkletlqvnlgklCnlsCkHCHveagpkrteemskevveeilellkkskiktlDltG 61 
                 r+++ + +vn+ + Cn +C+ C v +++  ++   +e +++ +e l ++ ++ + l G
  MMETSP1137-20121227|6970_1 360 RQSTVCAWVNVIYGCNERCSYCVVPTTRGAEQSRPRESIRAEIEELVANGYREVTLLG 417
                 56677789****************9888777766666666555555544444444433 PP

>> TIGR00539  hemN_rel: putative oxygen-independent coproporphyrinogen III oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0       3.2   7.7e+02      10      19 ..     374     383 ..     370     402 .. 0.78
   2 ?   10.3   0.0   0.00025     0.059     118     197 ..     481     561 ..     475     590 .. 0.82

  Alignments for each domain:
  == domain 1    score: -3.3 bits;  conditional E-value: 3.2
   TIGR00539  10 CeqkCgYCdf 19 
                 C+++C+YC  
  MMETSP1137-20121227|6970_1 374 CNERCSYCVV 383
                 9*******65 PP

  == domain 2    score: 10.3 bits;  conditional E-value: 0.00025
   TIGR00539 118 vqsfedDkLeklgrvhkakevasavelakks.GlenislDLmyglPlqtleelkeelklaleLdaehlsvYaLivepntvl 197
                  qs +d+ L++++r + ak  +  v++++       i+ D + g P++t+e+ ++ lkl  e++ + l + a +  p+t  
  MMETSP1137-20121227|6970_1 481 FQSGDDEVLRNMERGYTAKRYKQIVDQIRARlPDAAITADAIVGFPGETEEQFQNTLKLMEEVKFDQLNTAAYSPRPHTPA 561
                 58999***********************976145689***********************999999887777666666655 PP

>> TIGR03963  rSAM_QueE_Clost: putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   0.00028     0.068      26      72 ..     371     417 ..     356     421 .. 0.73

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 0.00028
   TIGR03963  26 lkgcnlncsycd..tkyanekdaayellsaeeildyiketgvknvtltG 72 
                 + gcn +csyc   t+   e++ + e + ae  ++ + ++g ++vtl G
  MMETSP1137-20121227|6970_1 371 IYGCNERCSYCVvpTTRGAEQSRPRESIRAE--IEELVANGYREVTLLG 417
                 579********63366667777777777654..78888999*****988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (647 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       194  (0.047294); expected 82.0 (0.02)
Passed bias filter:                      151  (0.0368113); expected 82.0 (0.02)
Passed Vit filter:                        44  (0.0107265); expected 4.1 (0.001)
Passed Fwd filter:                        17  (0.00414432); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              17  [number of targets reported over threshold]
# CPU time: 0.71u 0.17s 00:00:00.88 Elapsed: 00:00:00.65
# Mc/sec: 1313.80
//
Query:       MMETSP1137-20121227|6971_1  [L=154]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (154 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        62  (0.0151146); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.17s 00:00:00.34 Elapsed: 00:00:00.28
# Mc/sec: 700.91
//
Query:       MMETSP1137-20121227|6972_1  [L=56]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        54  (0.0131643); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.16s 00:00:00.27 Elapsed: 00:00:00.27
# Mc/sec: 273.76
//
Query:       MMETSP1137-20121227|6973_1  [L=169]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      0.001   16.4   4.5      0.035   11.3   0.2    2.2  2  TIGR02349 DnaJ_bact: chaperone protein DnaJ


Domain annotation for each model (and alignments):
>> TIGR02349  DnaJ_bact: chaperone protein DnaJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.8   0.4   0.00021      0.85     185     211 ..      58      81 ..      42      89 .. 0.61
   2 !   11.3   0.2   8.6e-06     0.035     185     211 ..     131     154 ..     114     161 .. 0.72

  Alignments for each domain:
  == domain 1    score: 6.8 bits;  conditional E-value: 0.00021
   TIGR02349 185 sqqtCseCkGeGkiikekCkeCkGkgr 211
                 ++q C eCkGe  +   +C+ C G+g+
  MMETSP1137-20121227|6973_1  58 NAQPCVECKGEKVV---TCTICDGSGV 81 
                 44555555555443...3555555554 PP

  == domain 2    score: 11.3 bits;  conditional E-value: 8.6e-06
   TIGR02349 185 sqqtCseCkGeGkiikekCkeCkGkgr 211
                 +++ Cs+C+G+G ++   C +C+G+g 
  MMETSP1137-20121227|6973_1 131 TENVCSNCDGRGVVV---CDNCQGTGI 154
                 456677777777665...666666654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (169 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       135  (0.0329108); expected 82.0 (0.02)
Passed bias filter:                      107  (0.0260848); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.22u 0.17s 00:00:00.39 Elapsed: 00:00:00.28
# Mc/sec: 769.18
//
Query:       MMETSP1137-20121227|6974_1  [L=727]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00014   18.6   0.3    0.00021   17.9   0.2    1.2  1  TIGR02734 crtI_fam: phytoene desaturase
     0.0048   13.3   0.0     0.0076   12.7   0.0    1.2  1  TIGR00562 proto_IX_ox: protoporphyrinogen oxidase
  ------ inclusion threshold ------
      0.022   11.4   0.1      0.033   10.8   0.1    1.2  1  TIGR00275 TIGR00275: flavoprotein, HI0933 family


Domain annotation for each model (and alignments):
>> TIGR02734  crtI_fam: phytoene desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.2   1.6e-07   0.00021       2      44 ..     136     182 ..     135     198 .. 0.85

  Alignments for each domain:
  == domain 1    score: 17.9 bits;  conditional E-value: 1.6e-07
   TIGR02734   2 vViGaGlgGLAlAirL....aaaGievtvlekrdkpGGRagvleedG 44 
                  V+GaG+gGL +A+rL    + +G ++ ++e  +++ GR ++l+  G
  MMETSP1137-20121227|6974_1 136 AVVGAGAGGLYSAMRLidtgKMQGSDICIFEMTNRVAGRLYSLRGLG 182
                 69**************3333356899***************998665 PP

>> TIGR00562  proto_IX_ox: protoporphyrinogen oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.7   0.0   5.5e-06    0.0076       4      45 ..     134     177 ..     131     185 .. 0.88

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 5.5e-06
   TIGR00562   4 kvvvvGgGisGLciayalekerp..dvelvlvEakdRvGGkiyT 45 
                 + +vvG+G  GL  a +l    +  + ++ ++E  +Rv G++y 
  MMETSP1137-20121227|6974_1 134 ELAVVGAGAGGLYSAMRLIDTGKmqGSDICIFEMTNRVAGRLYS 177
                 789**************988766679**************9985 PP

>> TIGR00275  TIGR00275: flavoprotein, HI0933 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.1   2.4e-05     0.033       2      36 ..     136     174 ..     135     180 .. 0.87

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 2.4e-05
   TIGR00275   2 iiiGgGaaGlmaAitaae....egakVlllEknkkigkK 36 
                 +++G+Ga Gl++A+++      +g +++++E +++++  
  MMETSP1137-20121227|6974_1 136 AVVGAGAGGLYSAMRLIDtgkmQGSDICIFEMTNRVAGR 174
                 7************999776667899********999765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (727 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        96  (0.0234032); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                        20  (0.00487567); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.51u 0.15s 00:00:00.66 Elapsed: 00:00:00.40
# Mc/sec: 2398.90
//
Query:       MMETSP1137-20121227|6975_1  [L=677]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.033   10.5   0.2      0.045   10.1   0.1    1.1  1  TIGR00133 gatB: aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, B subunit


Domain annotation for each model (and alignments):
>> TIGR00133  gatB: aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, B subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.1   1.1e-05     0.045     331     416 ..     552     638 ..     495     653 .. 0.87

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 1.1e-05
   TIGR00133 331 lldafeevvklikepklavnWileellgeLnkkkislaea.llkpeelaeliklikegkisqksakelleellenkkdpkklieklg 416
                 l +a +e  k++ ++k+ +n ++ el + Lnk +++ a +   +++el +l +  +++++ qk a ++l++ ++++++ +k ++ +g
  MMETSP1137-20121227|6975_1 552 LTSARDECEKAAFQAKKCANKLVFELGKALNKCDLDQAGKlGRQATELRQLSDKAEKEVMKQKGALKILNKYVSDEQQWHKFVSVKG 638
                 555556777777778******************999887768999******************************999999887655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (677 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       146  (0.0355924); expected 82.0 (0.02)
Passed bias filter:                      124  (0.0302292); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.17s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 2291.20
//
Query:       MMETSP1137-20121227|6976_1  [L=573]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (573 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        67  (0.0163335); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.15s 00:00:00.53 Elapsed: 00:00:00.42
# Mc/sec: 1800.71
//
Query:       MMETSP1137-20121227|6977_1  [L=235]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (235 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        97  (0.023647); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.17s 00:00:00.39 Elapsed: 00:00:00.27
# Mc/sec: 1148.79
//
Query:       MMETSP1137-20121227|6978_1  [L=408]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.5e-76  253.4  18.4      4e-48  161.7   3.2    4.1  4  TIGR00845 caca: sodium/calcium exchanger 1
    1.1e-12   45.5   0.5    1.5e-12   45.1   0.4    1.1  1  TIGR00367 TIGR00367: K+-dependent Na+/Ca+ exchanger homolog
    1.4e-07   27.4   1.0    1.9e-07   27.0   0.7    1.1  1  TIGR00927 2A1904: K+-dependent Na+/Ca+ exchanger


Domain annotation for each model (and alignments):
>> TIGR00845  caca: sodium/calcium exchanger 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.2   0.2   5.3e-23   7.2e-20     444     613 ..       6     161 ..       4     161 .. 0.96
   2 !   43.6   0.2   1.4e-15   1.9e-12     431     527 ..     106     196 ..     103     218 .. 0.81
   3 !  161.7   3.2   2.9e-51     4e-48     730     835 ..     240     345 ..     220     349 .. 0.96
   4 !   10.6   0.0   1.3e-05     0.018     877     910 ..     367     400 ..     364     407 .. 0.89

  Alignments for each domain:
  == domain 1    score: 68.2 bits;  conditional E-value: 5.3e-23
   TIGR00845 444 dyvfteGtlvfkPgetqkelrieiidddifeedehfyvrlsnlrvssedglleaekasavaqlasPllatvtildddhaGiftfeekvlevsesiGelevkvlrtsGarGtvivPyktvegtaregkdfedaegelvfendeteklievkivdeeeyekeesffielgeP 613
                 +y   +G + fk g+ +  l+i i ddd  + d  f ++l+  + +   g           +++ P+  tvt+ ddd a ++++ +++l v es  ++ v+vlr+   rGtv   ++t +g+a +  df  a+g l f +  + + +e++i+d+ ++e++e+f++ l eP
  MMETSP1137-20121227|6978_1   6 EYAAIKGEVEFKAGQPRAALEIPIYDDDAADGDAVFQIHLTSPSSG---G-----------VIGDPSFCTVTVQDDDGAAVLQLLSDQLVVKESDKKVVVEVLRKGNWRGTVGCRFETKDGSAVAPADFTAASGTLTFAEGVMHQSVEIEIIDDGKFEHDEKFQLLLLEP 161
                 69999***********************************999887...4...........4678***************************************************************************************************999887 PP

  == domain 2    score: 43.6 bits;  conditional E-value: 1.4e-15
   TIGR00845 431 dyktedGtanaGsdyvfteGtlvfkPgetqkelrieiidddifeedehfyvrlsnlrvssedglleaekasavaqlasPllatvtil.dddhaGiftf 527
                  ++t+dG+a a +d+  + Gtl+f  g  ++ ++ieiidd  fe de+f + l++   ++       +++      a  ++at+ti  dd+ aG+   
  MMETSP1137-20121227|6978_1 106 RFETKDGSAVAPADFTAASGTLTFAEGVMHQSVEIEIIDDGKFEHDEKFQLLLLEPFGGA----EFPNHTDGG---AGRNIATITIKsDDERAGVIDN 196
                 699************************************************999887663....233343333...3578999999636667998754 PP

  == domain 3    score: 161.7 bits;  conditional E-value: 2.9e-51
   TIGR00845 730 tvfwkvlfafvPPtdylgGwacfvvsilliGlltaliGdlashfGctiglkdsvtavvfvalGtsvPdtfaskvaavqdkyadasiGnvtGsnavnvflGiGvaws 835
                 +++wk+++afvPP+ ++gG+ cf v+++ iGlltaliGdla +fGct+g+  s+ta+++va+Gts+Pdtfask aa+++  adasiGn+tGsn+vnvflG+G+ w+
  MMETSP1137-20121227|6978_1 240 SLPWKIVLAFVPPARFCGGYPCFLVALVAIGLLTALIGDLADQFGCTVGMPSSITAITLVAMGTSLPDTFASKTAAINEVHADASIGNITGSNSVNVFLGLGLPWA 345
                 689******************************************************************************************************7 PP

  == domain 4    score: 10.6 bits;  conditional E-value: 1.3e-05
   TIGR00845 877 rrkeiGgelGGPrtaklltsallvllwllyvlla 910
                 rr  +G elGG  ++k+  sal++++w +y+  +
  MMETSP1137-20121227|6978_1 367 RRAVLGYELGGEPVSKYGLSALFISFWCIYIAAS 400
                 77899*************************9865 PP

>> TIGR00367  TIGR00367: K+-dependent Na+/Ca+ exchanger homolog
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.1   0.4   1.1e-15   1.5e-12     180     260 ..     263     344 ..     198     350 .. 0.90

  Alignments for each domain:
  == domain 1    score: 45.1 bits;  conditional E-value: 1.1e-15
   TIGR00367 180 ivgltllvvgsrllVdsavqiaetlgiseeiiGltilAaGTSlpeLvvsviaarkgl.gdlavgsvvGsNifdIlvglglpa 260
                  v+l+ + + + l+ d a q + t+g++  i  +t++A+GTSlp+   s +aa+ ++  d ++g++ GsN  ++ +glglp+
  MMETSP1137-20121227|6978_1 263 LVALVAIGLLTALIGDLADQFGCTVGMPSSITAITLVAMGTSLPDTFASKTAAINEVhADASIGNITGSNSVNVFLGLGLPW 344
                 4568899999*************************************9999888776269*********************9 PP

>> TIGR00927  2A1904: K+-dependent Na+/Ca+ exchanger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.0   0.7   1.4e-10   1.9e-07    1051    1133 ..     262     345 ..     259     351 .. 0.93

  Alignments for each domain:
  == domain 1    score: 27.0 bits;  conditional E-value: 1.4e-10
   TIGR00927 1051 flGsilwiamfsylmvwwahqvGetiGiseeimGltilaaGtsipdlitsvivarkGl.GdmavsssvGsnifditvGlplpwl 1133
                  fl +++ i +++ l+   a q G t+G+   i  +t++a Gts+pd  +s   a   +  d ++    Gsn  ++ +Gl lpw 
  MMETSP1137-20121227|6978_1  262 FLVALVAIGLLTALIGDLADQFGCTVGMPSSITAITLVAMGTSLPDTFASKTAAINEVhADASIGNITGSNSVNVFLGLGLPWA 345 
                  8899999999****************************************99997765379999*******************5 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (408 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       146  (0.0355924); expected 82.0 (0.02)
Passed bias filter:                      123  (0.0299854); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.38u 0.15s 00:00:00.53 Elapsed: 00:00:00.56
# Mc/sec: 961.63
//
Query:       MMETSP1137-20121227|6981_1  [L=313]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.4e-05   19.2   0.0    9.1e-05   18.9   0.0    1.0  1  TIGR03591 polynuc_phos: polyribonucleotide nucleotidyltransferase
      0.005   13.1   0.0     0.0062   12.8   0.0    1.1  1  TIGR02696 pppGpp_PNP: guanosine pentaphosphate synthetase I/polyribonucleotide nucleotidyltransferase
  ------ inclusion threshold ------
      0.015   12.9   0.0       0.02   12.5   0.0    1.1  1  TIGR03665 arCOG04150: arCOG04150 universal archaeal KH domain protein
      0.016   11.6   0.1       0.02   11.2   0.1    1.0  1  TIGR03319 YmdA_YtgF: conserved hypothetical protein YmdA/YtgF


Domain annotation for each model (and alignments):
>> TIGR03591  polynuc_phos: polyribonucleotide nucleotidyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.0   8.8e-08   9.1e-05     546     613 ..       5      77 ..       1      82 [. 0.78

  Alignments for each domain:
  == domain 1    score: 18.9 bits;  conditional E-value: 8.8e-08
   TIGR03591 546 seyaPrietikinkdkireviGkgGkvireiieetgakidiedd...Gt.vk.iaaadkeaaekakklieeit 613
                 ++   ++et+  +kd +++viG+ G++i+e++ ++g++i+i+++   G+ +k +++ d +a++ a+ +++e++
  MMETSP1137-20121227|6981_1   5 RPLQGQMETLDCPKDLVGRVIGRRGETINELQAKSGTRIQIDQTvpdGQpCKiVITGDPNAVRLAVPMVQEVM 77 
                 55667899*********************************98655554334134556777777887777766 PP

>> TIGR02696  pppGpp_PNP: guanosine pentaphosphate synthetase I/polyribonucleotide nucleotidyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.8   0.0     6e-06    0.0062     580     616 ..      11      47 ..       2      78 .. 0.88

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 6e-06
   TIGR02696 580 viavkipvdkigevigpkgkvinsiqdetgaeisied 616
                 + ++  p d +g vig +g +in++q ++g+ i i++
  MMETSP1137-20121227|6981_1  11 METLDCPKDLVGRVIGRRGETINELQAKSGTRIQIDQ 47 
                 6678899***************************986 PP

>> TIGR03665  arCOG04150: arCOG04150 universal archaeal KH domain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0     2e-05      0.02       3      36 ..      15      48 ..      13      79 .. 0.81

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 2e-05
   TIGR03665  3 kipkdrigvliGkkgevkkeieektkvkleidse 36
                  pkd +g +iG++ge+ +e++ k +++++id++
  MMETSP1137-20121227|6981_1 15 DCPKDLVGRVIGRRGETINELQAKSGTRIQIDQT 48
                5689999999999999999999999999999975 PP

>> TIGR03319  YmdA_YtgF: conserved hypothetical protein YmdA/YtgF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.1   1.9e-05      0.02     214     250 ..      19      60 ..      10      80 .. 0.80

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 1.9e-05
   TIGR03319 214 emkGRiiGreGRniralEtltGvdliiDdt.....Peavils 250
                 ++ GR+iGr G  i  l +  G  + iD+t     P+ +++ 
  MMETSP1137-20121227|6981_1  19 DLVGRVIGRRGETINELQAKSGTRIQIDQTvpdgqPCKIVIT 60 
                 689************************998544445555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (313 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        65  (0.0158459); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.26u 0.15s 00:00:00.41 Elapsed: 00:00:00.40
# Mc/sec: 1032.81
//
Query:       MMETSP1137-20121227|6982_1  [L=124]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (124 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        74  (0.01804); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.12s 00:00:00.28 Elapsed: 00:00:00.27
# Mc/sec: 606.17
//
Query:       MMETSP1137-20121227|6984_1  [L=112]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (112 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        53  (0.0129205); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.15s 00:00:00.28 Elapsed: 00:00:00.23
# Mc/sec: 642.73
//
Query:       MMETSP1137-20121227|6985_1  [L=92]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (92 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        63  (0.0153584); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.41
# Mc/sec: 296.17
//
Query:       MMETSP1137-20121227|6986_1  [L=542]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.8e-57  190.8   0.0    6.1e-57  190.1   0.0    1.3  1  TIGR00723 ttdB_fumA_fumB: hydrolyase, tartrate beta subunit/fumarate domain protein, Fe-S type
    1.1e-27   94.8   0.0    1.5e-27   94.3   0.0    1.1  1  TIGR00722 ttdA_fumA_fumB: hydrolyase, tartrate alpha subunit/fumarate domain protein, Fe-S type


Domain annotation for each model (and alignments):
>> TIGR00723  ttdB_fumA_fumB: hydrolyase, tartrate beta subunit/fumarate domain protein, Fe-S type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  190.1   0.0     3e-60   6.1e-57       3     169 .]     376     539 ..     374     539 .. 0.98

  Alignments for each domain:
  == domain 1    score: 190.1 bits;  conditional E-value: 3e-60
   TIGR00723   3 vkelkvgdvvyltGkiitarDeahkrllelldegkelPfdleekvifhaGPivkkneepirvvsvGPttsarmdsfeeelleklgvkavigkGgmskkvvealkkygavylaavgGcaallaks.vkkveavafedLGmPeaiweleveefGPlivaiDskGnslfke 169
                 +++ +v ++++l+G++i+arD ah++l+e ld+g+ lP +++++++++aGP+++++++   ++s GPtt++rmds++  ++   g++++++kG++sk+v++a+k yg++yl ++gG+aa+la++ +kk+e++ + +LGm ea+w++eve+f P++v +D+kG+++fk+
  MMETSP1137-20121227|6986_1 376 LTKCPVKTRLSLSGTLIVARDIAHAKLKERLDAGQGLPSYMRDHAVYYAGPAKTPEGYA--SGSFGPTTAGRMDSYVADFQAAGGSMVMLAKGNRSKQVTKACKTYGGFYLGSIGGPAAILAQNcIKKMEVLEYPELGM-EAVWKIEVENF-PAFVVVDDKGDDFFKK 539
                 78999****************************************************98..*************************************************************999**************.***********.*************985 PP

>> TIGR00722  ttdA_fumA_fumB: hydrolyase, tartrate alpha subunit/fumarate domain protein, Fe-S type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.3   0.0   7.2e-31   1.5e-27      31     270 ..      80     327 ..      56     330 .. 0.82

  Alignments for each domain:
  == domain 1    score: 94.3 bits;  conditional E-value: 7.2e-31
   TIGR00722  31 eeseia.kevlkailenieiaeklevPvCqDtGvpivFvkvgsekvlieelkeeikegvekateevpLRpnvvevld...rentgdntGlnvpqinveivkddeveivvlpkGaGsenvsalkmllPa.dglegvkkfvletvkeaggkpCPPiivGvGigg.saelaakLakkalLrkvge...rhpnkklakleeelleeinelG..iGpmGlgGkvtaldvkvevaarhtaslpvavsiqCwanRrat 270
                 e s+ + + v   +l+n++ia    +P CqDtG+ i   k g+   + ++ + ++ +g+    +++ LR + v +ld   ++nt++n     +qi+++ v ++e   + l kG+Gs n + l   + a  + + +  f+ e+++++g+ +CPP    + igg sael++k  k a  r + +     +++  a  ++e++++i +l   +G   +gGk+   dv+v   +rh as pv++ + C a+R+a 
  MMETSP1137-20121227|6986_1  80 EASDXSdRFVALELLKNANIAAGRILPGCQDTGTAIAMGKKGQYVWTDGDDEAHLSRGIYDTYTQTNLRYSQVAPLDmwtEQNTKTN---LPAQIEINSVAGNEYSFQFLAKGGGSANKTYLYQETKAlLNPDRLMSFMSEKIATLGTAACPPYHLAIVIGGlSAELTLKTVKNASTRYLDNlptSGNEHGRAFRDLEMEKQIHKLTqkLGIAQFGGKYFCHDVRVIRMPRHGASCPVGIGVSCSADRQAL 327
                 55555513445579****************************999****************************99762226666666...7889*************************99977655525679***************************98689999999999976655441114444555555666666666664224667799*********************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (542 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        76  (0.0185275); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.36u 0.15s 00:00:00.51 Elapsed: 00:00:00.60
# Mc/sec: 1192.30
//
Query:       MMETSP1137-20121227|6987_1  [L=189]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (189 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        89  (0.0216967); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.15s 00:00:00.35 Elapsed: 00:00:00.26
# Mc/sec: 959.46
//
Query:       MMETSP1137-20121227|6988_1  [L=242]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (242 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.13s 00:00:00.36 Elapsed: 00:00:00.40
# Mc/sec: 798.53
//
Query:       MMETSP1137-20121227|6989_1  [L=659]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (659 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        86  (0.0209654); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.16s 00:00:00.56 Elapsed: 00:00:00.52
# Mc/sec: 1672.71
//
Query:       MMETSP1137-20121227|6990_1  [L=214]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.1e-11   40.6   0.0    5.6e-11   40.2   0.0    1.2  1  TIGR00052 TIGR00052: nudix-type nucleoside diphosphatase, YffH/AdpP family
    1.4e-08   32.7   0.0    1.9e-08   32.2   0.0    1.3  1  TIGR00586 mutt: mutator mutT protein
    3.4e-06   24.5   0.0    4.8e-06   24.1   0.0    1.4  1  TIGR02705 nudix_YtkD: nucleoside triphosphatase YtkD


Domain annotation for each model (and alignments):
>> TIGR00052  TIGR00052: nudix-type nucleoside diphosphatase, YffH/AdpP family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.2   0.0   4.1e-14   5.6e-11      28     173 ..      45     189 ..      22     202 .. 0.73

  Alignments for each domain:
  == domain 1    score: 40.2 bits;  conditional E-value: 4.1e-14
   TIGR00052  28 fkdeestkkkr.eilkrgdaaavllydk...kkdsvvlvkQfRiaayarreefksdqllelvaglvekaeslEdvarrEaiEEaGyqvknlkkils.lysspGgvselihlfvaEvdknqkagig...GgvdeeeievlelvksqAlefikegk 173
                 +k ++ t+ +r e  +  da+a+l+  k   k+ +++lv+QfR+ + a          lel aglv+ +e + + a+rE  EE+Gy  + ++ + s +  spG++ e i++    vd ++  +      + d+e+i v  ++ s+  + +k+ +
  MMETSP1137-20121227|6990_1  45 RKWDMATRATRqEAKDAVDAVAILALLKapgKETEILLVRQFRPPVNA--------VTLELPAGLVDAGETPSQAALRELKEETGYT-GTIQDCSStVALSPGLTNESIQIVTVSVDLTTPENSNpqqALEDTEDIDVRRVKLSELTQTLKDAQ 189
                 45555666555267778899999887543348899*********8743........4589**************************7.778888762567*****************9998776511145555555555555555555555544 PP

>> TIGR00586  mutt: mutator mutT protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.2   0.0   1.4e-11   1.9e-08      16      83 ..      77     146 ..      64     190 .. 0.72

  Alignments for each domain:
  == domain 1    score: 32.2 bits;  conditional E-value: 1.4e-11
   TIGR00586  16 nneifitrraadadlanklefPGGkieaGetpeqavvrelqeevgit..aqhfelfekleyeypqkkltl 83 
                 + ei++ r+      a  le P G ++aGetp qa  rel+ee g t   q  ++   l     ++ +++
  MMETSP1137-20121227|6990_1  77 ETEILLVRQFRPPVNAVTLELPAGLVDAGETPSQAALRELKEETGYTgtIQDCSSTVALSPGLTNESIQI 146
                 56888989888889999***************************98721455555555555555555444 PP

>> TIGR02705  nudix_YtkD: nucleoside triphosphatase YtkD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.1   0.0   3.5e-09   4.8e-06      46      74 ..      94     122 ..      37     129 .. 0.93

  Alignments for each domain:
  == domain 1    score: 24.1 bits;  conditional E-value: 3.5e-09
   TIGR02705  46 GlefPGGkveegetskeaaiRevleetGa 74 
                  le P G v+ get+ +aa Re++eetG 
  MMETSP1137-20121227|6990_1  94 TLELPAGLVDAGETPSQAALRELKEETGY 122
                 58*************************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (214 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       101  (0.0246221); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.21u 0.14s 00:00:00.35 Elapsed: 00:00:00.31
# Mc/sec: 911.15
//
Query:       MMETSP1137-20121227|6991_1  [L=294]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      3e-79  264.3   0.0    3.5e-79  264.0   0.0    1.0  1  TIGR03138 QueF: queuine synthase
    2.8e-21   73.4   0.0    1.5e-15   54.9   0.0    2.2  2  TIGR03139 QueF-II: 7-cyano-7-deazaguanine reductase


Domain annotation for each model (and alignments):
>> TIGR03138  QueF: queuine synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  264.0   0.0   1.7e-82   3.5e-79       4     263 ..       6     273 ..       3     279 .. 0.88

  Alignments for each domain:
  == domain 1    score: 264.0 bits;  conditional E-value: 1.7e-82
   TIGR03138   4 ekseLgkkteykeeYdpslLfpipRslkreelgl...eeeklpfaGvDlWnayelsWLnkkgkpqvaiaeleipaespnlieskslklYlnslnqtrfesaeevkkllekDlskaagaev..kvellsldelaeleiaelegeciDd...ldieideyepdasllktes..se..eeveetlvshLLksnClvtgqPDWasvvikyrgkkidrealLkYlvsfRqhneFheqCverifadilkalqpekLtvyarytRRGGlDinPlRssee 263
                 + ++Lgk+++ +e Yd+ lL+p+pR+  r+ l+l   ++e+lpf G+D+Wn+ye sWL+k+g p+  i e++i++ +pnl+eskslklYlnsln++rfes e   +++  Dl k++g     +v++ls++    + ++ ++ +c+Dd   ld e+ +++ d s+l+t+   s+  + v+e+lvshLL++ C+vtgqPDW+sv ++yrg +idr++l +Y+ s R+  +Fhe+Cve +f  il++++pe+L v+ r+ RRGG+DinP+R + +
  MMETSP1137-20121227|6991_1   6 HAAPLGKQSNTPEVYDAGLLYPVPRAIGRKLLKLedkQAEELPFLGEDVWNCYEASWLDKNGWPNRVILEVRISCYTPNLVESKSLKLYLNSLNFHRFESSEVAIATICADLHKTVGGAEppSVTILSVE---PALLTPKAWICVDDcfgLDTEL-AFDCDDSVLSTQMptSDgpNVVTERLVSHLLRTLCPVTGQPDWGSVLLEYRGPAIDRASLCRYVCSLRKETGFHENCVELLFLAILRRCEPEALRVTGRFLRRGGIDINPVRCTPN 273
                 5679****************************9954456789*************************************************************************997551166666665...5666677889999976645544.556666666665422223489*******************************************************************************************9865 PP

>> TIGR03139  QueF-II: 7-cyano-7-deazaguanine reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0   6.6e-07    0.0014      47      87 ..      82     121 ..      64     134 .. 0.78
   2 !   54.9   0.0   7.3e-19   1.5e-15      29     109 ..     190     268 ..     177     274 .. 0.93

  Alignments for each domain:
  == domain 1    score: 16.4 bits;  conditional E-value: 6.6e-07
   TIGR03139  47 vPdqklvelkslklyllsfrneg.afheevtnkilddlvkll 87 
                  P  +lve+kslklyl+s   +  +  e  + +i  dl+k++
  MMETSP1137-20121227|6991_1  82 TP--NLVESKSLKLYLNSLNFHRfESSEVAIATICADLHKTV 121
                 45..48***********997665267788899******9987 PP

  == domain 2    score: 54.9 bits;  conditional E-value: 7.3e-19
   TIGR03139  29 slCPktgqPDfativieYvPdqklvelkslklyllsfrnegafheevtnkilddlvkllePrklevigkftarGgiktkvv 109
                 +lCP+tgqPD++ +++eY      ++  sl  y+ s r+e  fhe++++ ++  + +  eP+ l+v+g+f  rGgi ++ v
  MMETSP1137-20121227|6991_1 190 TLCPVTGQPDWGSVLLEYR--GPAIDRASLCRYVCSLRKETGFHENCVELLFLAILRRCEPEALRVTGRFLRRGGIDINPV 268
                 79****************5..5689***************************************************99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (294 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        26  (0.00633837); expected 82.0 (0.02)
Passed bias filter:                       26  (0.00633837); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.22u 0.16s 00:00:00.38 Elapsed: 00:00:00.44
# Mc/sec: 881.93
//
Query:       MMETSP1137-20121227|6992_1  [L=170]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (170 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        76  (0.0185275); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.15s 00:00:00.32 Elapsed: 00:00:00.30
# Mc/sec: 747.94
//
Query:       MMETSP1137-20121227|6994_1  [L=248]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (248 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       136  (0.0331546); expected 82.0 (0.02)
Passed bias filter:                       97  (0.023647); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.15s 00:00:00.39 Elapsed: 00:00:00.35
# Mc/sec: 935.24
//
Query:       MMETSP1137-20121227|6995_1  [L=608]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (608 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       215  (0.0524135); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.16s 00:00:00.57 Elapsed: 00:00:00.55
# Mc/sec: 1459.08
//
Query:       MMETSP1137-20121227|6996_1  [L=106]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (106 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        54  (0.0131643); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.14s 00:00:00.29 Elapsed: 00:00:00.43
# Mc/sec: 325.37
//
Query:       MMETSP1137-20121227|6997_1  [L=135]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0046   14.3   0.8     0.0063   13.9   0.6    1.3  1  TIGR00549 mevalon_kin: mevalonate kinase
  ------ inclusion threshold ------
      0.057   11.5   1.5      0.067   11.2   0.4    1.9  2  TIGR03455 HisG_C-term: ATP phosphoribosyltransferase, C-terminal domain


Domain annotation for each model (and alignments):
>> TIGR00549  mevalon_kin: mevalonate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.6   3.1e-06    0.0063     185     255 ..       4      73 ..       2      95 .. 0.91

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 3.1e-06
   TIGR00549 185 lVakVrellekfpeviksileaigelvkeakaaledkdveqlgelmninqglLkslgvShpkleqlvelar 255
                 ++++V+++le+  + ++++  ++g +vk   ++l++ d+++++ +m++ ++  ++l + ++ ++   +++ 
  MMETSP1137-20121227|6997_1   4 VLRQVASRLESA-QKMQQVSSQMGGVVKSMDKVLASMDMNKIAAVMDQFEKSFDELDLRSQAVDGTLAAST 73 
                 678999999997.99***************************************99999999987777665 PP

>> TIGR03455  HisG_C-term: ATP phosphoribosyltransferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.4   3.2e-05     0.067       8      38 ..      13      43 ..       6      97 .. 0.89
   2 ?   -3.4   0.0       1.2   2.5e+03      87      93 ..     121     127 ..     113     133 .. 0.52

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 3.2e-05
   TIGR03455  8 ekkekieelltrlegvlearkkvllklnvpk 38
                e ++k++++ +++ gv+++ +kvl +++++k
  MMETSP1137-20121227|6997_1 13 ESAQKMQQVSSQMGGVVKSMDKVLASMDMNK 43
                4699********************9999875 PP

  == domain 2    score: -3.4 bits;  conditional E-value: 1.2
   TIGR03455  87 GAedIlv 93 
                  Aed+l+
  MMETSP1137-20121227|6997_1 121 DAEDMLE 127
                 3444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (135 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       307  (0.0748415); expected 82.0 (0.02)
Passed bias filter:                      189  (0.0460751); expected 82.0 (0.02)
Passed Vit filter:                        23  (0.00560702); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.18u 0.17s 00:00:00.35 Elapsed: 00:00:00.38
# Mc/sec: 468.91
//
Query:       MMETSP1137-20121227|6998_1  [L=278]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (278 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        50  (0.0121892); expected 82.0 (0.02)
Passed bias filter:                       41  (0.00999512); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.20s 00:00:00.37 Elapsed: 00:00:00.28
# Mc/sec: 1265.27
//
Query:       MMETSP1137-20121227|6999_1  [L=105]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        8.7    3.3  38.7         12    2.9  26.8    1.0  1  TIGR02794 tolA_full: protein TolA


Domain annotation for each model (and alignments):
>> TIGR02794  tolA_full: protein TolA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9  26.8    0.0028        12      93     191 ..       8      97 ..       3     104 .. 0.44

  Alignments for each domain:
  == domain 1    score: 2.9 bits;  conditional E-value: 0.0028
   TIGR02794  93 eqarqkelekqraaaekaak.kaeeaakekeekkkqaeeakakqaaEakakaeaeaKaekkakee.AakkaEeeakakaaaeakkkaEaeeakkkaeaeak 191
                 eq +qk++          +k +a  +  ++   + q +e+ ak  +E++a+++a++ a +k+  + Aa+ aEee++++aa +akk++ a + ++ a++ ak
  MMETSP1137-20121227|6999_1   8 EQSQQKNI----------KKtQAGNKGNQEGLSATQRAERDAKILQEKAAAKAAQREALAKQSPDgAAAVAEEEKRKQAARQAKKERLA-NSTQVAKQNAK 97 
                 33333333..........11122222222222333444555566666655555544334455555677777777766666666666643.22222222221 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (105 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       391  (0.0953194); expected 82.0 (0.02)
Passed bias filter:                      148  (0.03608); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.10u 0.19s 00:00:00.29 Elapsed: 00:00:00.44
# Mc/sec: 314.97
//
Query:       MMETSP1137-20121227|7000_1  [L=145]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (145 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        53  (0.0129205); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.19s 00:00:00.31 Elapsed: 00:00:00.37
# Mc/sec: 517.25
//
Query:       MMETSP1137-20121227|7001_1  [L=525]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00043   17.5   0.0    0.00068   16.8   0.0    1.2  1  TIGR00599 rad18: DNA repair protein rad18
  ------ inclusion threshold ------
      0.016   11.1   0.1      0.022   10.7   0.0    1.1  1  TIGR00396 leuS_bact: leucine--tRNA ligase


Domain annotation for each model (and alignments):
>> TIGR00599  rad18: DNA repair protein rad18
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0   3.3e-07   0.00068      22     103 ..     275     357 ..     268     368 .. 0.89

  Alignments for each domain:
  == domain 1    score: 16.8 bits;  conditional E-value: 3.3e-07
   TIGR00599  22 pldtslRChvCkdffkaPvltsCsHtFCslCiRrcLseepkCPlCraedqEskLRknfvveEivesfknlRksllel.lrvek 103
                 p+  ++ C + +d +  Pv t  + t+    i r+ +++   P+   +  +++LR n  ++E +++f ++  +l  + lr+  
  MMETSP1137-20121227|7001_1 275 PVPHAFLCPITQDLMLDPVCTHDNFTYERTAIERWFETHQTSPMTNLPLSNLQLRPNLGLKEQIDTFLQAQAALTXAaLRIST 357
                 5678899**************************************************************99998754156655 PP

>> TIGR00396  leuS_bact: leucine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   1.1e-05     0.022     228     313 ..     201     287 ..     188     297 .. 0.81

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 1.1e-05
   TIGR00396 228 eleFkiedekekiavfttrpdtlfgvtylalaaehplvkkvakenkkvaefik.kaeqkseaertkeekekkgvktglkai.nPltke 313
                 e++ +i+ ++ k+++  t   t f+++y + a ++ +v++v+k+ ++++e+ + +++q+s++  ++++ e++g+++  +a+  P+t++
  MMETSP1137-20121227|7001_1 201 EVDVEIALQDRKLKIIFTAGST-FALQYYVAARKERVVRRVIKTVQELREMHErMIAQESQIAGEQQAVEYSGQEPVPHAFlCPITQD 287
                 4555666667777776666655.89**********************9999862578999999999999****999888852688876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (525 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       164  (0.0399805); expected 82.0 (0.02)
Passed bias filter:                      133  (0.0324232); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.25u 0.30s 00:00:00.55 Elapsed: 00:00:00.47
# Mc/sec: 1474.35
//
Query:       MMETSP1137-20121227|7002_1  [L=618]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (618 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       279  (0.0680156); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.24s 00:00:00.58 Elapsed: 00:00:00.44
# Mc/sec: 1853.85
//
Query:       MMETSP1137-20121227|7003_1  [L=383]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0055   13.0   0.1     0.0092   12.3   0.1    1.2  1  TIGR02442 Cob-chelat-sub: cobaltochelatase subunit


Domain annotation for each model (and alignments):
>> TIGR02442  Cob-chelat-sub: cobaltochelatase subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.3   0.1   2.2e-06    0.0092     535     582 ..     166     215 ..     163     231 .. 0.85

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 2.2e-06
   TIGR02442 535 akreLeelptggrtPLaagLkkaaevlkn..ellkdkderplvvvitDGr 582
                 a ++L +l+  g tPL++++++ + +++   + lk+++++++vv+ tDG 
  MMETSP1137-20121227|7003_1 166 ALETLLSLSPLGTTPLTEAITAIISLIEPaaQTLKANGQQVVVVLATDGV 215
                 66788999*****************997511578999************5 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (383 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       105  (0.0255973); expected 82.0 (0.02)
Passed bias filter:                       96  (0.0234032); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.32u 0.14s 00:00:00.46 Elapsed: 00:00:00.79
# Mc/sec: 639.90
//
Query:       MMETSP1137-20121227|7004_1  [L=196]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.8e-29   98.1   0.0    8.3e-14   49.3   0.0    2.1  2  TIGR00149 TIGR00149_YbjQ: secondary thiamine-phosphate synthase enzyme


Domain annotation for each model (and alignments):
>> TIGR00149  TIGR00149_YbjQ: secondary thiamine-phosphate synthase enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.3   0.0     2e-17   8.3e-14       7      78 ..      39     109 ..      34     123 .. 0.92
   2 !   47.4   0.0   7.9e-17   3.3e-13      81     131 ..     144     194 ..     111     195 .. 0.89

  Alignments for each domain:
  == domain 1    score: 49.3 bits;  conditional E-value: 2e-17
   TIGR00149   7 takrkeliditseveavleesgvkdGlllvyvrHttaslvinEnadPdvkkDllrfleklvPedkeyerdel 78 
                  a++++l+dit  + ++++e g++dG l++ +rHtt++l+inE +  ++ +D+   l +l P  + y++++l
  MMETSP1137-20121227|7004_1  39 PAQQVSLHDITPALRHFIAEVGIRDGTLNLVSRHTTTALTINEMET-RLVDDVRDWLLRLAPPSEPYKHNDL 109
                 68999***************************************99.**********************954 PP

  == domain 2    score: 47.4 bits;  conditional E-value: 7.9e-17
   TIGR00149  81 nadaHlkssllgtsqvvpvenGrlalGtWqgiflaEfdgprtrrvivkvlG 131
                 na +Hl + llg+s+++p+ +G l +G Wq++ l+E+dgpr+r+v ++v+G
  MMETSP1137-20121227|7004_1 144 NAHSHLLAMLLGASETIPIADGELCIGQWQSVILVELDGPRERTVGAQVVG 194
                 899******************************************999988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (196 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        68  (0.0165773); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.20u 0.13s 00:00:00.33 Elapsed: 00:00:00.33
# Mc/sec: 783.94
//
Query:       MMETSP1137-20121227|7005_1  [L=370]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.6e-07   29.8  11.4    3.2e-07   28.9   4.2    2.9  2  TIGR01571 A_thal_Cys_rich: uncharacterized Cys-rich domain


Domain annotation for each model (and alignments):
>> TIGR01571  A_thal_Cys_rich: uncharacterized Cys-rich domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.9   4.2   7.7e-11   3.2e-07       2      94 ..      41     197 ..      40     203 .. 0.88
   2 ?    2.1   0.2     0.017        69      66      90 ..     204     228 ..     199     237 .. 0.77

  Alignments for each domain:
  == domain 1    score: 28.9 bits;  conditional E-value: 7.7e-11
   TIGR01571   2 eWetglldcleDislcllglfcpcvlfgkiaerlgtfaeecllaglllililallge..................................................................igllytgavRkklrkkyklqgaiceDflvhlfcclC 94 
                  W++gl++c+ D ++ +  lfc  ++ ++ ++r+++  ++ +  +l+l+l+l llg+                                                                  ++ll+ + vR k+r + +++++ c  +   ++  +C
  MMETSP1137-20121227|7005_1  41 AWSSGLFSCTADWCSLFTVLFCAPITTAQLYTRFSSHRGKTV-LFLSLALFL-LLGQilpsfaptpiksnstneyadsdeevrsilvtddavyveyesyteafkyqmtplraffaawafiaslCTLLVVCQVRRKIRVRDQIPEEQCGGCEDFCCSLWC 197
                 6**********************************4444433.344555544.444458889************************************************************99999*******************9988888888777 PP

  == domain 2    score: 2.1 bits;  conditional E-value: 0.017
   TIGR01571  66 avRkklrkkyklqgaiceDflvhlf 90 
                  vR k+r + +++++ c  +   ++
  MMETSP1137-20121227|7005_1 204 PVRRKIRVRDQIPEEQCGGCEDFCC 228
                 68************99996654443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (370 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        83  (0.020234); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.28u 0.18s 00:00:00.46 Elapsed: 00:00:00.38
# Mc/sec: 1285.16
//
Query:       MMETSP1137-20121227|7006_1  [L=131]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (131 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        86  (0.0209654); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.12s 00:00:00.28 Elapsed: 00:00:00.35
# Mc/sec: 494.02
//
Query:       MMETSP1137-20121227|7007_1  [L=151]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (151 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       114  (0.0277913); expected 82.0 (0.02)
Passed bias filter:                      104  (0.0253535); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.12s 00:00:00.30 Elapsed: 00:00:00.31
# Mc/sec: 642.91
//
Query:       MMETSP1137-20121227|7009_1  [L=155]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (155 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        93  (0.0226719); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.11s 00:00:00.28 Elapsed: 00:00:00.28
# Mc/sec: 705.46
//
Query:       MMETSP1137-20121227|7010_1  [L=388]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (388 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        71  (0.0173086); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.13s 00:00:00.39 Elapsed: 00:00:00.41
# Mc/sec: 1249.07
//
Query:       MMETSP1137-20121227|7011_1  [L=55]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        42  (0.0102389); expected 82.0 (0.02)
Passed bias filter:                       41  (0.00999512); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.15s 00:00:00.27 Elapsed: 00:00:00.28
# Mc/sec: 250.32
//
Query:       MMETSP1137-20121227|7012_1  [L=90]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (90 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        75  (0.0182838); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.14s 00:00:00.28 Elapsed: 00:00:00.32
# Mc/sec: 371.22
//
Query:       MMETSP1137-20121227|7015_1  [L=126]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (126 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        91  (0.0221843); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.13s 00:00:00.28 Elapsed: 00:00:00.47
# Mc/sec: 353.84
//
Query:       MMETSP1137-20121227|7016_1  [L=246]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (246 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       146  (0.0355924); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.16s 00:00:00.37 Elapsed: 00:00:00.38
# Mc/sec: 854.46
//
Query:       MMETSP1137-20121227|7018_1  [L=381]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (381 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        66  (0.0160897); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.14s 00:00:00.42 Elapsed: 00:00:00.39
# Mc/sec: 1289.43
//
Query:       MMETSP1137-20121227|7020_1  [L=294]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (294 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       269  (0.0655778); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.14s 00:00:00.39 Elapsed: 00:00:00.41
# Mc/sec: 946.46
//
Query:       MMETSP1137-20121227|7021_1  [L=454]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (454 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        92  (0.0224281); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.13s 00:00:00.45 Elapsed: 00:00:00.45
# Mc/sec: 1331.62
//
Query:       MMETSP1137-20121227|7022_1  [L=424]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (424 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       105  (0.0255973); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.18s 00:00:00.50 Elapsed: 00:00:00.41
# Mc/sec: 1364.96
//
Query:       MMETSP1137-20121227|7025_1  [L=214]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.01   13.0   0.7      0.013   12.7   0.5    1.1  1  TIGR02783 TrbL_P: P-type conjugative transfer protein TrbL


Domain annotation for each model (and alignments):
>> TIGR02783  TrbL_P: P-type conjugative transfer protein TrbL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.5   3.2e-06     0.013      74     188 ..      28     158 ..      19     168 .. 0.76

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 3.2e-06
   TIGR02783  74 flldnatalikaiinslaqigakalglsas.lsPgniveealdiaskvldaas....sifs.........pislivvlllalvivlvfaliavellvvlveaylvilagvillgfgglr...wTreyalsyl 188
                 +l+ +a+a+++    + + +  +++  s+s ++P++++++a  +  + l +++    +  s         +i     +++ + +++++ ++   +l+   e+ +v++  ++l+g+ gl+   wT+ y+ ++ 
  MMETSP1137-20121227|7025_1  28 MLVGHAAAWSPTSAMASRSAVIGSGR-SSSfARPSHLATQAQTALPRGLRSGHivacDQKStenkipfilDIGTKGGVVFYTFVGIILPFLVYSFLLDTLEMDVVTAGNIVLVGYVGLSivaWTASYVFRVA 158
                 56778888887765555553444444.444499*******9999977788888444422226667776667777788899999******************************9999754449**9998875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (214 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       155  (0.0377864); expected 82.0 (0.02)
Passed bias filter:                      109  (0.0265724); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.21u 0.15s 00:00:00.36 Elapsed: 00:00:00.42
# Mc/sec: 672.52
//
Query:       MMETSP1137-20121227|7026_1  [L=316]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (316 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       119  (0.0290102); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.16s 00:00:00.42 Elapsed: 00:00:00.32
# Mc/sec: 1303.39
//
Query:       MMETSP1137-20121227|7027_1  [L=127]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.2e-41  140.7   0.2    1.4e-41  140.6   0.2    1.0  1  TIGR00389 glyS_dimeric: glycine--tRNA ligase
    3.2e-07   27.4   0.0    3.7e-07   27.2   0.0    1.0  1  TIGR00408 proS_fam_I: proline--tRNA ligase
    1.4e-05   22.0   0.0    1.6e-05   21.8   0.0    1.0  1  TIGR00409 proS_fam_II: proline--tRNA ligase
    0.00036   17.4   0.0    0.00039   17.3   0.0    1.0  1  TIGR00442 hisS: histidine--tRNA ligase
     0.0007   16.4   0.1    0.00082   16.2   0.0    1.0  1  TIGR00418 thrS: threonine--tRNA ligase


Domain annotation for each model (and alignments):
>> TIGR00389  glyS_dimeric: glycine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  140.6   0.2   1.7e-44   1.4e-41     447     564 ..       2     124 ..       1     125 [. 0.92

  Alignments for each domain:
  == domain 1    score: 140.6 bits;  conditional E-value: 1.7e-44
   TIGR00389 447 lehsyqkev.deeeRevlrlkp....kvaPikvlvlplv.nkeelkeiakeiakaLrkeeiiikyddsgsiGkrYaraDeiGtpfavtiDfetleDetvtlReRdslkqvRvkieelvsalkkl 564
                 l+++y++++ d+e+R+vlr++p    ++aPik +vlplv nk el+++a+ +++ L+++ ++++yd +g+iG+rY+r De+Gtpf++t+Dfetl+D+tvtlR+Rd+++q+Rv++ el ++++++
  MMETSP1137-20121227|7027_1   2 LTSAYSEDEvDGEKRSVLRFHPrxxpRLAPIKAAVLPLVkNKPELVAKAQAVFERLQRR-YHVQYDAAGAIGRRYRRMDEVGTPFCITVDFETLDDDTVTLRDRDTTEQRRVTVAELLEIMEEQ 124
                 6799*99988**********96333369**********934569************987.***********************************************************99875 PP

>> TIGR00408  proS_fam_I: proline--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.2   0.0   4.6e-10   3.7e-07     278     381 ..      27     125 ..      25     127 .] 0.87

  Alignments for each domain:
  == domain 1    score: 27.2 bits;  conditional E-value: 4.6e-10
   TIGR00408 278 pkvapiqvvvipiifkkkenkkvlelarkveekLkkleiRvelderdn.rpGkkfskaElkGiPlrlevgpkdieknavvvlrRdekkKvevsldeleekvkell 381
                 p++api+  v+p ++k+k   +++++a+ v e+L++     +++++     G+++ +++  G P+ + v+ + +  ++v++  Rd++++  v+++el e ++e +
  MMETSP1137-20121227|7027_1  27 PRLAPIKAAVLP-LVKNK--PELVAKAQAVFERLQRR---YHVQYDAAgAIGRRYRRMDEVGTPFCITVDFETLDDDTVTLRDRDTTEQRRVTVAELLEIMEEQI 125
                 799*********.44433..47999******999886...55555555599**********************************************99888876 PP

>> TIGR00409  proS_fam_II: proline--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.8   0.0     2e-08   1.6e-05     471     568 .]      29     124 ..      24     124 .. 0.91

  Alignments for each domain:
  == domain 1    score: 21.8 bits;  conditional E-value: 2e-08
   TIGR00409 471 iAPyevvivvsnvkdeeqkklaeevyselkakgvdvllDdrneraGvkfrdseliGiplavvvGkksldnkeiEvkkrrngekqlikkaelkevlekq 568
                 +AP + ++++   ++ e    a+ v+++l+   + v +D  +  +G + r ++ +G p++++v  ++ld++ + ++ r + e+  + +ael e++e+q
  MMETSP1137-20121227|7027_1  29 LAPIKAAVLPLVKNKPELVAKAQAVFERLQR-RYHVQYDA-AGAIGRRYRRMDEVGTPFCITVDFETLDDDTVTLRDRDTTEQRRVTVAELLEIMEEQ 124
                 79********99999999999*******975.67888876.5679**********************************************9999876 PP

>> TIGR00442  hisS: histidine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.0   4.8e-07   0.00039     330     405 ..      40     113 ..      17     114 .. 0.78

  Alignments for each domain:
  == domain 1    score: 17.3 bits;  conditional E-value: 4.8e-07
   TIGR00442 330 valdeeaeaealklaeklrkagirvevdlegkklkkqlkyadkkgakfvvilgedelekgkvtlkdletgeqeeva 405
                 v  + e  a+a+++ e+l+++ ++v++d +g  +++++++ d+ g++f+++++ + l++++vtl+d +t eq +v+
  MMETSP1137-20121227|7027_1  40 VKNKPELVAKAQAVFERLQRR-YHVQYDAAG-AIGRRYRRMDEVGTPFCITVDFETLDDDTVTLRDRDTTEQRRVT 113
                 333445566666677777655.666666665.6***************************************9986 PP

>> TIGR00418  thrS: threonine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0     1e-06   0.00082     470     564 ..      29     124 ..      23     125 .. 0.82

  Alignments for each domain:
  == domain 1    score: 16.2 bits;  conditional E-value: 1e-06
   TIGR00418 470 LaPvQvrvipvsekhldyakkvaeklkkegir..vdvddrneklgkkiReaqkekipyvlvvGdkEveeeavtvRerkeekkekmsleellekvrke 564
                 LaP+ ++v+p  ++  + + k +  +++ + r  v+ d     +g + R       p+ + v  + +++ +vt R+r+  ++ +++++elle ++++
  MMETSP1137-20121227|7027_1  29 LAPIKAAVLPLVKNKPELVAKAQAVFERLQRRyhVQYDA-AGAIGRRYRRMDEVGTPFCITVDFETLDDDTVTLRDRDTTEQRRVTVAELLEIMEEQ 124
                 8*********98776666555555555544440055554.568*******************8888999***********************98876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (127 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       111  (0.02706); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.19u 0.17s 00:00:00.36 Elapsed: 00:00:00.24
# Mc/sec: 698.44
//
Query:       MMETSP1137-20121227|7028_1  [L=228]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (228 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        65  (0.0158459); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.16s 00:00:00.36 Elapsed: 00:00:00.28
# Mc/sec: 1074.77
//
Query:       MMETSP1137-20121227|7029_1  [L=992]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (992 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       116  (0.0282789); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.57u 0.14s 00:00:00.71 Elapsed: 00:00:00.71
# Mc/sec: 1844.13
//
Query:       MMETSP1137-20121227|7030_1  [L=296]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.014   13.6   3.1      0.031   12.5   2.2    1.6  1  TIGR04102 SWIM_PBPRA1643: SWIM/SEC-C metal-binding motif protein, PBPRA1643 family


Domain annotation for each model (and alignments):
>> TIGR04102  SWIM_PBPRA1643: SWIM/SEC-C metal-binding motif protein, PBPRA1643 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   2.2   7.6e-06     0.031      91     107 ..     107     123 ..      94     124 .. 0.85

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 7.6e-06
   TIGR04102  91 rndpCsCGsgkkykkCC 107
                   +pC CGsg  y  CC
  MMETSP1137-20121227|7030_1 107 EAEPCVCGSGDSYSNCC 123
                 468************** PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (296 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        65  (0.0158459); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.22u 0.17s 00:00:00.39 Elapsed: 00:00:00.33
# Mc/sec: 1183.90
//
Query:       MMETSP1137-20121227|7031_1  [L=474]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        0.1   10.4   4.4       0.29    9.0   0.0    2.4  2  TIGR02808 short_TIGR02808: TIGR02808 family protein


Domain annotation for each model (and alignments):
>> TIGR02808  short_TIGR02808: TIGR02808 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   1.2     0.015        62      17      39 ..      76      98 ..      74     101 .. 0.88
   2 ?    9.0   0.0     7e-05      0.29      18      34 ..     159     175 ..     157     181 .. 0.93

  Alignments for each domain:
  == domain 1    score: 1.5 bits;  conditional E-value: 0.015
   TIGR02808 17 MPvIiLaGFvaVaVvsilLLalk 39
                +P+Ii a F  +a+++++ L  +
  MMETSP1137-20121227|7031_1 76 LPLIIAASFFVIAILAVFFLGFT 98
                69**************9999776 PP

  == domain 2    score: 9.0 bits;  conditional E-value: 7e-05
   TIGR02808  18 PvIiLaGFvaVaVvsil 34 
                 PvI  +GF aV V+s +
  MMETSP1137-20121227|7031_1 159 PVIAAGGFNAVKVFSAW 175
                 9**************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (474 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       134  (0.032667); expected 82.0 (0.02)
Passed bias filter:                      112  (0.0273038); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.17s 00:00:00.54 Elapsed: 00:00:00.34
# Mc/sec: 1840.08
//
Query:       MMETSP1137-20121227|7032_1  [L=90]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (90 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        52  (0.0126767); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.15s 00:00:00.29 Elapsed: 00:00:00.24
# Mc/sec: 494.96
//
Query:       MMETSP1137-20121227|7033_1  [L=315]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (315 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        69  (0.0168211); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.15s 00:00:00.40 Elapsed: 00:00:00.43
# Mc/sec: 966.90
//
Query:       MMETSP1137-20121227|7035_1  [L=336]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (336 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       203  (0.0494881); expected 82.0 (0.02)
Passed bias filter:                      148  (0.03608); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.15s 00:00:00.42 Elapsed: 00:00:00.41
# Mc/sec: 1081.67
//
Query:       MMETSP1137-20121227|7036_1  [L=82]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (82 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        71  (0.0173086); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.18s 00:00:00.32 Elapsed: 00:00:00.25
# Mc/sec: 432.92
//
Query:       MMETSP1137-20121227|7038_1  [L=30]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (30 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        31  (0.00755729); expected 82.0 (0.02)
Passed bias filter:                       29  (0.00706972); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.13s 00:00:00.23 Elapsed: 00:00:00.24
# Mc/sec: 164.99
//
Query:       MMETSP1137-20121227|7039_1  [L=132]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (132 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       201  (0.0490005); expected 82.0 (0.02)
Passed bias filter:                      172  (0.0419308); expected 82.0 (0.02)
Passed Vit filter:                        19  (0.00463189); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.18s 00:00:00.36 Elapsed: 00:00:00.35
# Mc/sec: 497.79
//
Query:       MMETSP1137-20121227|7040_1  [L=305]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (305 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        83  (0.020234); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.13s 00:00:00.39 Elapsed: 00:00:00.36
# Mc/sec: 1118.24
//
Query:       MMETSP1137-20121227|7042_1  [L=77]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (77 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        68  (0.0165773); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.18s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 350.45
//
Query:       MMETSP1137-20121227|7043_1  [L=328]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (328 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        85  (0.0207216); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.13s 00:00:00.38 Elapsed: 00:00:00.38
# Mc/sec: 1139.27
//
Query:       MMETSP1137-20121227|7044_1  [L=140]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (140 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       123  (0.0299854); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.13s 00:00:00.28 Elapsed: 00:00:00.28
# Mc/sec: 637.19
//
Query:       MMETSP1137-20121227|7045_1  [L=188]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.7e-16   57.7   0.0    3.6e-16   57.2   0.0    1.2  1  TIGR03047 PS_II_psb28: photosystem II reaction center protein Psb28


Domain annotation for each model (and alignments):
>> TIGR03047  PS_II_psb28: photosystem II reaction center protein Psb28
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.2   0.0   8.8e-20   3.6e-16       8      77 ..     108     178 ..     100     182 .. 0.90

  Alignments for each domain:
  == domain 1    score: 57.2 bits;  conditional E-value: 8.8e-20
   TIGR03047   8 dEevvpdvrltrsrdgstgtallrfeepkalekeks.ktkeitglyliDeEGeletrevkakfvnGklkav 77 
                 +E +vpdv ltrsrdg+tgta++rf++ ++le+    +++ +tg++l D+EGe++t +v+  +v+G++k++
  MMETSP1137-20121227|7045_1 108 AELAVPDVALTRSRDGTTGTATFRFDSATVLERDDIwENGLVTGMWLRDSEGEMVTPDVSITWVQGQPKGI 178
                 6889****************************987515567899************************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (188 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        44  (0.0107265); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.19u 0.16s 00:00:00.35 Elapsed: 00:00:00.28
# Mc/sec: 855.65
//
Query:       MMETSP1137-20121227|7047_1  [L=358]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   2.6e-126  419.9   0.0   2.9e-126  419.8   0.0    1.0  1  TIGR00457 asnS: asparagine--tRNA ligase
    8.1e-32  108.5   0.4    4.5e-25   86.3   0.1    2.0  2  TIGR00458 aspS_arch: aspartate--tRNA ligase
    1.3e-07   28.4   0.1    3.8e-05   20.3   0.0    2.6  2  TIGR00499 lysS_bact: lysine--tRNA ligase
    9.6e-06   22.0   0.0    3.2e-05   20.3   0.0    1.8  1  TIGR00459 aspS_bact: aspartate--tRNA ligase
    0.00011   19.5   0.0     0.0015   15.9   0.0    2.5  1  TIGR00462 genX: EF-P lysine aminoacylase GenX
  ------ inclusion threshold ------
      0.027   11.6   0.0        1.1    6.4   0.0    2.1  2  TIGR02367 PylS_Cterm: pyrrolysine--tRNA ligase, C-terminal region


Domain annotation for each model (and alignments):
>> TIGR00457  asnS: asparagine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  419.8   0.0  4.2e-129  2.9e-126      34     379 ..       2     357 ..       1     358 [] 0.97

  Alignments for each domain:
  == domain 1    score: 419.8 bits;  conditional E-value: 4.2e-129
   TIGR00457  34 iaFlelrDGsslkalqavikkeleeeleqelkklttgssvsvsgkvvespkkkqelElkvkkievvgeaeeedyplqkkehsleflrelahLrlRtktlsAvlkvRsalskaiheyfqkegfvkvstPiltssdcEGagelFkvkt..........eg.vdfskdffgkeayLtvsgqlelEalalalskvytlgptFRAEksntkRHlsEfwmiEpElaFvnledllqlieelikyiikavleeakqelkfleknvekkkikkleeiisskfaritYtdAieiLkesdakkkfeledlwGvdlktehErflaeeyfksPvfvtdyPkeikaFYmkqnddektvaavDllvPkiGEi 379
                 +aF+e++DGs+l  lq vi+k++ +  ++      tg++++ +g++ves ++   +El+          + ++y       + e+lr+l+hLr+Rt+t++Av+++R+al++a+h++fq++gf++v++Pi+t sdcEGage+F+v+t          +g vd+++dffgk+a+Ltvsgql++E +a+a++ vyt+gptFRAE+snt+RHl+EfwmiEpE+aF+++ d+++ +e++++y i +vle++ +++kfl+k+ + +  k+l+ + ++ far+tYt+Aie+L ++ ++ k+e+++ wG++l+tehEr+lae+y k+P++v +yPk++kaFYm+ ndd+ktvaa+D+l+P++GE+
  MMETSP1137-20121227|7047_1   2 MAFVEINDGSTLVGLQLVISKKETNGWDELSAIGATGCAIVATGNIVESXGSXXXVELQXXXXXXXXXXDXAQYXXXXXAXTXEHLRTLTHLRPRTNTFGAVMRIRNALAYATHTFFQNNGFMYVNSPIITGSDCEGAGEMFQVTTldvskppktpDGaVDYAQDFFGKQAFLTVSGQLNAEHYACAFGSVYTFGPTFRAEDSNTTRHLAEFWMIEPEIAFADIIDDMNCAESYLRYCIAHVLEHCPEDIKFLAKHYDPELPKTLRFVADTPFARMTYTEAIEVLLKE-KNVKWEFPPEWGKELQTEHERYLAETYCKKPLIVYNYPKDCKAFYMRLNDDNKTVAAMDVLFPRLGEM 357
                 79*******************97777777777779***********************************************************************************************************************99655********************************************************************************************************99999999*************9998.57788*************************************************************96 PP

>> TIGR00458  aspS_arch: aspartate--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   0.0   6.3e-08   4.3e-05     125     177 ..      96     148 ..      78     152 .. 0.90
   2 !   86.3   0.1   6.6e-28   4.5e-25     174     347 ..     165     351 ..     154     357 .. 0.80

  Alignments for each domain:
  == domain 1    score: 20.5 bits;  conditional E-value: 6.3e-08
   TIGR00458 125 rrpkvqaifkirsevlesvreflaeegfievntPklvasateGGtelfeityf 177
                 r+ +  a+++ir+ +  +   f++++gf+ vn+P + +s  eG  e+f++t +
  MMETSP1137-20121227|7047_1  96 RTNTFGAVMRIRNALAYATHTFFQNNGFMYVNSPIITGSDCEGAGEMFQVTTL 148
                 677889********************************************965 PP

  == domain 2    score: 86.3 bits;  conditional E-value: 6.6e-28
   TIGR00458 174 ityfereaflaqsPqlykqvllaaglervyeiaPifraeehntkrhlnevisidiemafedhkdvldileelvvrvfedvaeklkk........elevlevkle.vpeeklerltydeaieil.rakGkei....kdgedlsteaekllGekmdglyfitd.fPteikPfytmPdednPeisksfdlly 347
                   +f ++afl+ s ql+     a+ +  vy  +P frae++nt+rhl+e+  i+ e+af+d  d ++  e  +   + +v e++ +        + + l  +l  v ++++ r+ty eaie+l + k ++     ++g +l te e++l e++  +  i+  +P + k fy+  + d+ ++  + d+l+
  MMETSP1137-20121227|7047_1 165 QDFFGKQAFLTVSGQLNAEHY-ACAFGSVYTFGPTFRAEDSNTTRHLAEFWMIEPEIAFADIIDDMNCAESYLRYCIAHVLEHCPEdikflakhYDPELPKTLRfVADTPFARMTYTEAIEVLlKEKNVKWefppEWGKELQTEHERYLAETYCKKPLIVYnYPKDCKAFYMRLN-DDNKTVAAMDVLF 351
                 569**************9875.778***********************************************************9944444443222222233234699************8624555443223369***************9888777655*********7666.6777888888775 PP

>> TIGR00499  lysS_bact: lysine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.2   0.0    0.0021       1.5      72     201 ..       3     133 ..       1     147 [. 0.57
   2 !   20.3   0.0   5.5e-08   3.8e-05     240     382 ..     189     324 ..     180     350 .. 0.64

  Alignments for each domain:
  == domain 1    score: 5.2 bits;  conditional E-value: 0.0021
   TIGR00499  72 tFitlqdes..gklqlyvnkdklsedveeleeklldlGDiigvkGklkktktgelsvkveelklltkalrplPekfhGlkdqEtryrkRylDlivnk..esrqtflkRskiikaiRkfldergflEvEtPilqs 201
                 +F++++d s  + lql+++k++++ + +el+     +G  i+++G+++++      v  +             +++       t  + R l     +  +   ++++R  +  a  +f++++gf+ v+ Pi+  
  MMETSP1137-20121227|7047_1   3 AFVEINDGStlVGLQLVISKKETN-GWDELSAIG-ATGCAIVATGNIVESXGSXXXVELQXXXXXXXXXX-DXAQYXXXXXAXTXEHLRTLTHLRPRtnTFGAVMRIRNALAYATHTFFQNNGFMYVNSPIITG 133
                 566666666333456666665543.344444333.56666666666666666655555555544444443.3334443444444444444443322200445677888899999999**********9999875 PP

  == domain 2    score: 20.3 bits;  conditional E-value: 5.5e-08
   TIGR00499 240 lekvyEigrvFRnEGvd.ttHnpEFttiElYqayadyedllelteellktlvkellgtlki............kykeeeldlkkpvkkitmleaikkidketgislddlkdsetakalakklaievaekslslgkilnklfeefvEetliq.Ptfit 382
                 +  vy  g +FR E  + t+H +EF +iE   a+ad+ d ++ +e+ l++ + ++l+++                k  ++  ++p+ ++t++eai+                     l k+++++  e     gk l++  e+++ et+++ P +++
  MMETSP1137-20121227|7047_1 189 FGSVYTFGPTFRAEDSNtTRHLAEFWMIEPEIAFADIIDDMNCAESYLRYCIAHVLEHCPEdikflakhydpeLPKTLRFVADTPFARMTYTEAIE--------------------VLLKEKNVKW-EFPPEWGKELQTEHERYLAETYCKkPLIVY 324
                 778**********9876268**********************************997776534444443332111222222233555555555555....................4444444444.444444444444444444333333344444 PP

>> TIGR00459  aspS_bact: aspartate--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   0.0   4.7e-08   3.2e-05     127     263 ..      92     249 ..       2     293 .. 0.73

  Alignments for each domain:
  == domain 1    score: 20.3 bits;  conditional E-value: 4.7e-08
   TIGR00459 127 YLdLRrpkmqqrlklRskvtkavRnflddkgFleietPiLtkatPeGardyLvPsRvk.....kgefyaLpqsPqlf.kq.LLmvsG...vdkY.......yqiarcfRDeDlRaDRq.PeftqiDlemsFlnqedvmelveklvsevfkevkk...i 263
                 +L  R +++   ++ R+ ++ a+  f++++gF+ ++ Pi+t +  eGa +    + +      k    a++ +   f kq  L vsG    ++Y       y     fR eD+   R   ef  i+ e++F++  d m+ +e+ ++  + +v +    
  MMETSP1137-20121227|7047_1  92 HLRPRTNTFGAVMRIRNALAYATHTFFQNNGFMYVNSPIITGSDCEGAGEMFQVTTLDvskppKTPDGAVDYAQDFFgKQaFLTVSGqlnAEHYacafgsvYTFGPTFRAEDSNTTRHlAEFWMIEPEIAFADIIDDMNCAESYLRYCIAHVLEhcpE 249
                 455577778889************************************99765555444566633344555555555444345566633324444443333888999******9999757*************9999999999998888777764442 PP

>> TIGR00462  genX: EF-P lysine aminoacylase GenX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   2.2e-06    0.0015       4     144 ..     107     288 ..     104     351 .. 0.62

  Alignments for each domain:
  == domain 1    score: 15.9 bits;  conditional E-value: 2.2e-06
   TIGR00462   4 rakllaaiRafFaergvlEvetpllseapvtd....vhlealktellee............ekekeklyLqtSPEyamKrLLaagsgkifqlakvfRneer.grlHnpEFtmLEwYrvgadleelmeeveellqevle...........................deeaeverlsyaeaferylg 144
                 r++l+ a  +fF+++g++ v++p+++ +  +      ++++l+++  ++            +   ++ +L+ S  +   +  a   g+++ ++ +fR e++  ++H  EF m+E   + ad+ + m+  e+ l+ +++                              +++ r++y+ea+e +l+
  MMETSP1137-20121227|7047_1 107 RNALAYATHTFFQNNGFMYVNSPIITGSDCEGagemFQVTTLDVS--KPpktpdgavdyaqDFFGKQAFLTVSGQLNAEHY-ACAFGSVYTFGPTFRAEDSnTTRHLAEFWMIEPEIAFADIIDDMNCAESYLRYCIAhvlehcpedikflakhydpelpktlrfVADTPFARMTYTEAIEVLLK 288
                 556666666677777777777776654432210000223333332..1111111111111122346677777777776664.556799*********99985789*********77777777777777778888877778777777777766666666666666555556666666666555444 PP

>> TIGR02367  PylS_Cterm: pyrrolysine--tRNA ligase, C-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.0     0.018        12      35      53 ..     114     132 ..      84     141 .. 0.78
   2 ?    6.4   0.0    0.0016       1.1     107     157 ..     192     247 ..     190     256 .. 0.79

  Alignments for each domain:
  == domain 1    score: 2.9 bits;  conditional E-value: 0.018
   TIGR02367  35 lakalvdrGfvevkspili 53 
                    +++++Gf+ v+spi+ 
  MMETSP1137-20121227|7047_1 114 THTFFQNNGFMYVNSPIIT 132
                 447899***********96 PP

  == domain 2    score: 6.4 bits;  conditional E-value: 0.0016
   TIGR02367 107 ifeiGscyrke.sdGsehleeftmln....lvelGspeeerrerleelikevleel 157
                 ++  G+ +r e s+ ++hl ef m++    ++++   +++ +  l   i +vle+ 
  MMETSP1137-20121227|7047_1 192 VYTFGPTFRAEdSNTTRHLAEFWMIEpeiaFADIIDDMNCAESYLRYCIAHVLEHC 247
                 6788*****8758999********74333378888888888888888888888875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (358 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        73  (0.0177962); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.38u 0.16s 00:00:00.54 Elapsed: 00:00:00.50
# Mc/sec: 945.04
//
Query:       MMETSP1137-20121227|7048_1  [L=202]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (202 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        74  (0.01804); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.17s 00:00:00.36 Elapsed: 00:00:00.25
# Mc/sec: 1066.47
//
Query:       MMETSP1137-20121227|7049_1  [L=748]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (748 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       109  (0.0265724); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.16s 00:00:00.61 Elapsed: 00:00:00.44
# Mc/sec: 2243.81
//
Query:       MMETSP1137-20121227|7050_1  [L=1493]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        9.6    2.6  13.4         15    2.0   9.3    1.2  1  TIGR00860 LIC: cation transporter family protein


Domain annotation for each model (and alignments):
>> TIGR00860  LIC: cation transporter family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   9.3    0.0036        15     333     390 ..    1203    1260 ..    1174    1331 .. 0.58

  Alignments for each domain:
  == domain 1    score: 2.0 bits;  conditional E-value: 0.0036
   TIGR00860  333 kksakkkrklllerlarllkkkeegeekrrpaleakelsslelrakkggedlesktee 390 
                  +++ k++++l +++++++++++++++++++++ ++++ ++ + + ++++++l+   ++
  MMETSP1137-20121227|7050_1 1203 QQQLKNQQHLQQQQQQQRQQRQQQQQQQQQQQQQQQQQQQQQQQQQQQQRQLHRAHQQ 1260
                  2333333444444444444444444433333333333333333333333444332211 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1493 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       870  (0.212092); expected 82.0 (0.02)
Passed bias filter:                      299  (0.0728913); expected 82.0 (0.02)
Passed Vit filter:                       133  (0.0324232); expected 4.1 (0.001)
Passed Fwd filter:                        34  (0.00828864); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 2.53u 0.24s 00:00:02.76 Elapsed: 00:00:01.83
# Mc/sec: 1076.83
//
Query:       MMETSP1137-20121227|7051_1  [L=91]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (91 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        61  (0.0148708); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.24
# Mc/sec: 500.46
//
Query:       MMETSP1137-20121227|7053_1  [L=228]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (228 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       119  (0.0290102); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.18s 00:00:00.38 Elapsed: 00:00:00.27
# Mc/sec: 1114.57
//
Query:       MMETSP1137-20121227|7054_1  [L=414]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (414 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       191  (0.0465627); expected 82.0 (0.02)
Passed bias filter:                       97  (0.023647); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.17s 00:00:00.48 Elapsed: 00:00:00.36
# Mc/sec: 1517.87
//
Query:       MMETSP1137-20121227|7055_1  [L=219]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (219 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        49  (0.0119454); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.13s 00:00:00.32 Elapsed: 00:00:00.32
# Mc/sec: 903.30
//
Query:       MMETSP1137-20121227|7056_1  [L=939]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (939 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       113  (0.0275475); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.56u 0.14s 00:00:00.70 Elapsed: 00:00:00.53
# Mc/sec: 2338.45
//
Query:       MMETSP1137-20121227|7057_1  [L=218]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (218 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        39  (0.00950756); expected 82.0 (0.02)
Passed bias filter:                       39  (0.00950756); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.15s 00:00:00.34 Elapsed: 00:00:00.35
# Mc/sec: 822.10
//
Query:       MMETSP1137-20121227|7058_1  [L=239]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (239 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        66  (0.0160897); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.15s 00:00:00.36 Elapsed: 00:00:00.34
# Mc/sec: 927.81
//
Query:       MMETSP1137-20121227|7059_1  [L=112]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (112 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       148  (0.03608); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.13s 00:00:00.28 Elapsed: 00:00:00.25
# Mc/sec: 591.31
//
Query:       MMETSP1137-20121227|7060_1  [L=184]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (184 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        43  (0.0104827); expected 82.0 (0.02)
Passed bias filter:                       41  (0.00999512); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.18s 00:00:00.35 Elapsed: 00:00:00.28
# Mc/sec: 867.36
//
Query:       MMETSP1137-20121227|7061_1  [L=229]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (229 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        54  (0.0131643); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.12s 00:00:00.31 Elapsed: 00:00:00.32
# Mc/sec: 944.55
//
Query:       MMETSP1137-20121227|7064_1  [L=315]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (315 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        56  (0.0136519); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.14s 00:00:00.34 Elapsed: 00:00:00.45
# Mc/sec: 923.92
//
Query:       MMETSP1137-20121227|7065_1  [L=389]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.4e-14   50.3   0.0    5.1e-14   49.7   0.0    1.2  1  TIGR03466 HpnA: hopanoid-associated sugar epimerase
    1.8e-05   21.5   0.0    2.5e-05   21.1   0.0    1.2  1  TIGR01179 galE: UDP-glucose 4-epimerase
    0.00017   18.8   0.0    0.00028   18.0   0.0    1.3  1  TIGR01850 argC: N-acetyl-gamma-glutamyl-phosphate reductase
    0.00046   17.2   0.0    0.00088   16.2   0.0    1.5  1  TIGR04180 EDH_00030: NAD dependent epimerase/dehydratase, LLPSF_EDH_00030 family
     0.0097   13.3   0.0      0.017   12.5   0.0    1.4  1  TIGR01777 yfcH: TIGR01777 family protein
  ------ inclusion threshold ------
      0.021   12.2   0.0      0.035   11.4   0.0    1.3  1  TIGR03649 ergot_EASG: ergot alkaloid biosynthesis protein, AFUA_2G17970 family
      0.026   11.4   0.1      0.044   10.7   0.1    1.3  1  TIGR01214 rmlD: dTDP-4-dehydrorhamnose reductase


Domain annotation for each model (and alignments):
>> TIGR03466  HpnA: hopanoid-associated sugar epimerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.7   0.0   8.7e-17   5.1e-14       3     113 ..       7     115 ..       5     141 .. 0.90

  Alignments for each domain:
  == domain 1    score: 49.7 bits;  conditional E-value: 8.7e-17
   TIGR03466   3 vlvtGatGFvGsavvrllleeGeevrvlvrktsdrrnlee.ld.vEiveGdlkdeaslkkalkGcealfHvAAdyrlwakdpeelykanvegtravleaAleagvervvytss 113
                  +v G++G+vGs+++r+ l++G++v  + r++ + + ++  ld +E +  d++d+a+l++a+kG +a++     +      +e + + n e+ +++++aA+  gver vy s+
  MMETSP1137-20121227|7065_1   7 LVVVGGSGYVGSHIMRAALARGASVASVSRRGKPVASVSPpLDrAEWISADVQDSAALQNAMKGADAVISCLGAF----GSNEFMRRVNGEQNEKIISAAAAGGVERFVYISA 115
                 5799******************************99997436549***********************9876654....46788999***********************997 PP

>> TIGR01179  galE: UDP-glucose 4-epimerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1   0.0   4.2e-08   2.5e-05       2      79 ..       7      79 ..       6     121 .. 0.77

  Alignments for each domain:
  == domain 1    score: 21.1 bits;  conditional E-value: 4.2e-08
   TIGR01179  2 iLvtGgaGyiGshvvrqllekgkevvvlDnlskgskealkalekitevklvegdladkekleavleeekidaviHfaa 79
                ++v+Gg+Gy+Gsh++r+ l++g++v  +    k  +++ + l+   + + +++d++d+++l+++++    davi   +
  MMETSP1137-20121227|7065_1  7 LVVVGGSGYVGSHIMRAALARGASVASVSRRGKPVASVSPPLD---RAEWISADVQDSAALQNAMKG--ADAVISCLG 79
                789*********************9987766666555555555...799*************99864..567776555 PP

>> TIGR01850  argC: N-acetyl-gamma-glutamyl-phosphate reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.0   4.8e-07   0.00028       2      96 ..       6     100 ..       5     107 .. 0.77

  Alignments for each domain:
  == domain 1    score: 18.0 bits;  conditional E-value: 4.8e-07
   TIGR01850   2 kvaivGasGYtGaeLlrllakHpevevtklvssreagkklsevhphlkglvd..lkleelee.eeileeadvvflAlphgvsaelvpelle.kgvkvid 96 
                 ++++vG+sGY G  ++r   +  + +   ++s ++ gk++++v p l +     + +++ ++ +++++ ad+v+ +l +  s+e+++++   ++ k+i 
  MMETSP1137-20121227|7065_1   6 RLVVVGGSGYVGSHIMRAALARGA-S---VASVSRRGKPVASVSPPLDRAEWisADVQDSAAlQNAMKGADAVISCLGAFGSNEFMRRVNGeQNEKIIS 100
                 6789*************8765432.2...4567789***********87655234444444479999************99999999987734466665 PP

>> TIGR04180  EDH_00030: NAD dependent epimerase/dehydratase, LLPSF_EDH_00030 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0   1.5e-06   0.00088       2      76 ..       8      76 ..       7     126 .. 0.76

  Alignments for each domain:
  == domain 1    score: 16.2 bits;  conditional E-value: 1.5e-06
   TIGR04180  2 lvtGadGfiGshlvealvekGaevralvlynsfnswGwldevekevkkeievvlGdirdaesvkkavkgvdvvfh 76
                +v G  G++Gsh++ a +++Ga+v ++       + G   ++ +   ++ e ++ d++d++++++a+kg+d+v+ 
  MMETSP1137-20121227|7065_1  8 VVVGGSGYVGSHIMRAALARGASVASVS------RRGKPVASVSPPLDRAEWISADVQDSAALQNAMKGADAVIS 76
                68999*****************997654......4555444555688999*********************9864 PP

>> TIGR01777  yfcH: TIGR01777 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.5   0.0   2.9e-05     0.017       2      67 ..       8      80 ..       7     103 .. 0.66

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 2.9e-05
   TIGR01777  2 litGgtGliGralveelekkghevviltrskekekeekke.sakevaee......aeeealegvdavinLaGe 67
                ++ Gg+G +G++++++  ++g +v  ++r+ +  ++ +     +e+++       a ++a++g+davi   G+
  MMETSP1137-20121227|7065_1  8 VVVGGSGYVGSHIMRAALARGASVASVSRRGKPVASVSPPlDRAEWISAdvqdsaALQNAMKGADAVISCLGA 80
                799**************************98866554422022334333443333445589999999987654 PP

>> TIGR03649  ergot_EASG: ergot alkaloid biosynthesis protein, AFUA_2G17970 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   5.9e-05     0.035       3     109 ..       8     117 ..       6     141 .. 0.79

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 5.9e-05
   TIGR03649   3 LllgGtGkvasriarllaaasvpllvasrssssaaledekavkFdwldedtyenvfssddemekeelisavylvappvl...dlasllikFidvavkkgvkrfvllsasa 109
                 +++gG+G v+s+i r   a +  +   sr+++  a+ +    + +w+  d  + +  ++     + +is +    ++ +    + +   k i  a + gv+rfv++sa+ 
  MMETSP1137-20121227|7065_1   8 VVVGGSGYVGSHIMRAALARGASVASVSRRGKPVASVSPPLDRAEWISADVQDSAALQNAMKGADAVISCLGAFGSNEFmrrVNGEQNEKIISAAAAGGVERFVYISAAP 117
                 689*************9999***9999****998888888889999998887776645555557789999988877765222233567899999*************975 PP

>> TIGR01214  rmlD: dTDP-4-dehydrorhamnose reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.1   7.5e-05     0.044       1      99 [.       6     114 ..       6     116 .. 0.84

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 7.5e-05
   TIGR01214   1 rilitGakgqlgreLveqlskegsevvaltrs.................qldledpealeellreikPdvvvntaAytdVDkaEseaekayavNalatenlAraaarvga.llvhiS 99 
                 r++++G++g +g+++++++   g  v  ++r+                 ++d++d +al++ ++    d+v+ +       +a   +e  ++vN    e++  aaa+ g+ ++v+iS
  MMETSP1137-20121227|7065_1   6 RLVVVGGSGYVGSHIMRAALARGASVASVSRRgkpvasvsppldraewiSADVQDSAALQNAMKG--ADAVISCL------GAFGSNEFMRRVNGEQNEKIISAAAAGGVeRFVYIS 114
                 789*************99999999998888888****************************9998..57888773......455677788888888888888888777763577777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (389 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       156  (0.0380302); expected 82.0 (0.02)
Passed bias filter:                      146  (0.0355924); expected 82.0 (0.02)
Passed Vit filter:                        37  (0.00901999); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.25u 0.29s 00:00:00.54 Elapsed: 00:00:00.71
# Mc/sec: 723.15
//
Query:       MMETSP1137-20121227|7066_1  [L=123]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (123 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       213  (0.0519259); expected 82.0 (0.02)
Passed bias filter:                      110  (0.0268162); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.22s 00:00:00.33 Elapsed: 00:00:00.40
# Mc/sec: 405.87
//
Query:       MMETSP1137-20121227|7067_1  [L=86]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (86 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        53  (0.0129205); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.15s 00:00:00.25 Elapsed: 00:00:00.26
# Mc/sec: 436.58
//
Query:       MMETSP1137-20121227|7069_1  [L=143]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (143 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       128  (0.0312043); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.12s 00:00:00.28 Elapsed: 00:00:00.69
# Mc/sec: 273.54
//
Query:       MMETSP1137-20121227|7070_1  [L=560]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.8e-08   31.4  17.2    7.3e-06   24.0   1.9    3.5  2  TIGR00880 2_A_01_02: multidrug resistance protein


Domain annotation for each model (and alignments):
>> TIGR00880  2_A_01_02: multidrug resistance protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.9   4.1   9.7e-06      0.04       2      81 ..      57     142 ..      56     173 .. 0.87
   2 !   24.0   1.9   1.8e-09   7.3e-06       5      93 ..     320     415 ..     315     456 .. 0.85

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 9.7e-06
   TIGR00880   2 lllagyAlgqlvvsplsglltdrvGrkpvllvglfifvlsqllfals.........snitvliiarilqGfgaaaalvagaaliadiik 81 
                  l ++yAl  l++sp +    + +G ++ ll+g +++ +  l f ++           ++v ++  +++Gf+a++ ++a ++++ad +k
  MMETSP1137-20121227|7070_1  57 ALYLSYALTALLFSPALL---SVLGARSSLLLGASLYCVYVLSFSAAlitpvdmaaVRFAVALVGGVVGGFAAGFLWAAQGTYFADNAK 142
                 67789**********877...899*********999999888887777799999999****************************9776 PP

  == domain 2    score: 24.0 bits;  conditional E-value: 1.8e-09
   TIGR00880   5 agyAlgqlvvsplsglltdrvGrkpvllvglfifvlsqllfals........snitvliiarilqGfgaaaalvagaaliadiikeeersvalglls 93 
                 a+ Al+ +++ + ++  ++r G++pv+l+gl+ f+  +ll+ ++        s+  +l+ + +lqG+g a    + +al+ad+++++  ++a++ ++
  MMETSP1137-20121227|7070_1 320 ALVALSAALLQLPFKWAASRCGKQPVMLLGLAAFLSLSLLVLTGppspdasaSTWLLLLSCYLLQGVGRACYEGTNKALYADFFPRDS-GAAFSNIV 415
                 67899999999999999**************************9******977777888899**********************9875.44444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (560 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       134  (0.032667); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.14s 00:00:00.53 Elapsed: 00:00:00.54
# Mc/sec: 1368.78
//
Query:       MMETSP1137-20121227|7071_1  [L=347]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (347 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        43  (0.0104827); expected 82.0 (0.02)
Passed bias filter:                       41  (0.00999512); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.15s 00:00:00.40 Elapsed: 00:00:00.43
# Mc/sec: 1065.12
//
Query:       MMETSP1137-20121227|7072_1  [L=236]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (236 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        38  (0.00926377); expected 82.0 (0.02)
Passed bias filter:                       38  (0.00926377); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.13s 00:00:00.33 Elapsed: 00:00:00.33
# Mc/sec: 943.92
//
Query:       MMETSP1137-20121227|7073_1  [L=514]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (514 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       139  (0.0338859); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.18s 00:00:00.52 Elapsed: 00:00:00.52
# Mc/sec: 1304.66
//
Query:       MMETSP1137-20121227|7074_1  [L=824]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (824 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        77  (0.0187713); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.50u 0.11s 00:00:00.61 Elapsed: 00:00:00.68
# Mc/sec: 1599.40
//
Query:       MMETSP1137-20121227|7075_1  [L=229]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (229 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        90  (0.0219405); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.15s 00:00:00.35 Elapsed: 00:00:00.35
# Mc/sec: 863.59
//
Query:       MMETSP1137-20121227|7076_1  [L=561]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      3e-24   83.5   0.1    5.3e-24   82.7   0.1    1.3  1  TIGR01963 PHB_DH: 3-hydroxybutyrate dehydrogenase
    9.8e-16   55.8   0.1    1.6e-15   55.1   0.0    1.2  1  TIGR03971 SDR_subfam_1: oxidoreductase, SDR family
    3.5e-14   50.9   0.0    5.2e-14   50.3   0.0    1.2  1  TIGR01830 3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase
    7.5e-14   49.5   0.4    1.3e-13   48.7   0.3    1.3  1  TIGR03206 benzo_BadH: 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase
    1.7e-13   48.6   0.0    2.6e-13   48.0   0.0    1.2  1  TIGR01829 AcAcCoA_reduct: acetoacetyl-CoA reductase
    3.5e-12   44.1   0.0    5.8e-12   43.4   0.0    1.3  1  TIGR02415 23BDH: acetoin reductases
    4.8e-10   37.2   0.0    7.3e-10   36.6   0.0    1.2  1  TIGR01832 kduD: 2-deoxy-D-gluconate 3-dehydrogenase
    3.2e-06   23.6   0.4    4.5e-06   23.1   0.3    1.1  1  TIGR02632 RhaD_aldol-ADH: rhamnulose-1-phosphate aldolase/alcohol dehydrogenase
    3.9e-06   24.3   0.0    6.3e-06   23.6   0.0    1.2  1  TIGR01500 sepiapter_red: sepiapterin reductase
    1.7e-05   22.2   0.1    2.8e-05   21.4   0.1    1.3  1  TIGR01831 fabG_rel: putative 3-oxoacyl-(acyl-carrier-protein) reductase
    2.9e-05   21.3   0.1    4.8e-05   20.5   0.0    1.3  1  TIGR03325 BphB_TodD: cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase
     0.0041   14.4   0.0       0.12    9.7   0.0    2.9  2  TIGR00068 glyox_I: lactoylglutathione lyase


Domain annotation for each model (and alignments):
>> TIGR01963  PHB_DH: 3-hydroxybutyrate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.7   0.1   1.5e-26   5.3e-24      42     190 ..      15     164 ..       3     172 .. 0.91

  Alignments for each domain:
  == domain 1    score: 82.7 bits;  conditional E-value: 1.5e-26
   TIGR01963  42 akeleeaggevlalkadvtkeeeiadlieavaaefgsldi..LvnnAGiqhvapieefptekfekiiavnltsafhtiraalpimkkqgwGriiniasvhglvasafKsaYvaaKHglvGltKvlAlEvAetgitanaicPgyvrtpLvek 190
                 a +++ a+++++ ++ad+t +e ++++++a  a++g + +  LvnnAG+    +++  p++ +e+ +a+n +++++++ a lp +k   +Gr++n++sv+g va +  +aY a+KH+l  ++ vl  E+   ++ + ++ Pg +rtpL e+
  MMETSP1137-20121227|7076_1  15 AGAATFASTTATIVVADLTTAEGVERVVKAGLAAAGXSGLfaLVNNAGLCLPGNVDWLPPDAYERSMALNFHAPVKLTYALLPALKS-ARGRVVNVTSVDGVVALPSTAAYSASKHALEAFSDVLRAEMLPWDVNVVVVEPGTMRTPLAEA 164
                 5566778889999****************99888887664449*****************************************986.68**********************************************************886 PP

>> TIGR03971  SDR_subfam_1: oxidoreductase, SDR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.1   0.0   4.6e-18   1.6e-15      68     205 ..      26     163 ..      14     191 .. 0.91

  Alignments for each domain:
  == domain 1    score: 55.1 bits;  conditional E-value: 4.6e-18
   TIGR03971  68 larkadvrkleelravveegveefGr..ldvvvanaGvlsygrafelseeqWdtvldvnlkGvWktvkavvPalierknGGsiiivssvaglkalpglahyaaakhGlvgltktlanelaeygirvnsihPtsvdtamie 205
                  + +ad+ + e ++ vv+ g++  G   l  +v+naG+   g++  l +++++  + +n++   k   a +Pal  ++  G ++ v+sv g++alp +a y+a+kh l ++ + l  e+ ++++ v +++P +++t++ e
  MMETSP1137-20121227|7076_1  26 TIVVADLTTAEGVERVVKAGLAAAGXsgLFALVNNAGLCLPGNVDWLPPDAYERSMALNFHAPVKLTYALLPALKSAR--GRVVNVTSVDGVVALPSTAAYSASKHALEAFSDVLRAEMLPWDVNVVVVEPGTMRTPLAE 163
                 5667999999*************997446779******************************************8888..9********************************************************987 PP

>> TIGR01830  3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.3   0.0   1.5e-16   5.2e-14      47     193 ..      22     169 ..       3     189 .. 0.87

  Alignments for each domain:
  == domain 1    score: 50.3 bits;  conditional E-value: 1.5e-16
   TIGR01830  47 gvkaaavkldvsdeeevkelveeveeelg..eidilvnnAGitrDklllrmkeedwdevikvnLkgvfnvtkavlkkmikkrsGriinissvvgllGnagqanYaasKaGligltkslakElasrnitvnavaPGfietdmteklsekv 193
                  ++a++v++d++ +e v+++v++  +++g   +  lvnnAG+   + +  +  + +++ +++n ++  ++t a l ++  + +Gr++n++sv g++  +  a Y+asK  l +++  l  E+   +++v +v PG ++t++ e++ +  
  MMETSP1137-20121227|7076_1  22 STTATIVVADLTTAEGVERVVKAGLAAAGxsGLFALVNNAGLCLPGNVDWLPPDAYERSMALNFHAPVKLTYALLPALK-SARGRVVNVTSVDGVVALPSTAAYSASKHALEAFSDVLRAEMLPWDVNVVVVEPGTMRTPLAEAFADGW 169
                 35788999**************9888776336788************************************99988765.567**********************************************************99987765 PP

>> TIGR03206  benzo_BadH: 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.7   0.3   3.8e-16   1.3e-13      43     194 ..      14     166 ..       3     175 .. 0.90

  Alignments for each domain:
  == domain 1    score: 48.7 bits;  conditional E-value: 3.8e-16
   TIGR03206  43 vaaairekggkaeavavditdrasvdaavaaaeealgpvdv..lvnnagwdvlkpflktekaewerliainltgalymhhavlkgmverkagrivniasdaarvgssgeavyaackgglvafsktlarelarhgitvnvvcpgptdtalledvk 194
                  a+a + +  +a  v +d+t  + v+  v a   a g   +  lvnnag    ++     +  +er +a+n+   + + +a+l+ + +  +gr+vn++s  + v     a y+a k  l afs  l  e+   ++ v vv pg   t+l e ++
  MMETSP1137-20121227|7076_1  14 EAGAATFASTTATIVVADLTTAEGVERVVKAGLAAAGXSGLfaLVNNAGLCLPGNVDWLPPDAYERSMALNFHAPVKLTYALLPAL-KSARGRVVNVTSVDGVVALPSTAAYSASKHALEAFSDVLRAEMLPWDVNVVVVEPGTMRTPLAEAFA 166
                 455556667889999***************99998887764339****************************************97.5678*********************************************************988765 PP

>> TIGR01829  AcAcCoA_reduct: acetoacetyl-CoA reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.0   0.0   7.5e-16   2.6e-13      22     207 ..       2     180 ..       1     194 [. 0.86

  Alignments for each domain:
  == domain 1    score: 48.0 bits;  conditional E-value: 7.5e-16
   TIGR01829  22 kdGykvvanvapneerakewlqekevegfdvavvkadvssfeeakaavakveaelGpvdv..lvnnaGitrdavfkkmtkeqWeevidtnlnsvfnvtrpviegmlergfGriinissvnGlkGqfGqanysaakaGliGftkalaqegakkgvtvnviaPGyiatemvkavredvlkkivaqiPvkr 207
                 ++G+kvva++++++ +a+ ++ ++       ++v ad+++ e  +++v+   a+ G   +  lvnnaG+     +  +  +++e  ++ n+++  ++t  ++ +++  + Gr++n++sv+G+      a ysa+k  l  f+  l +e    +v v v+ PG + t++ +a  +  l++   + P +r
  MMETSP1137-20121227|7076_1   2 DAGFKVVAACYTEAGAAT-FA-STT-----ATIVVADLTTAEGVERVVKAGLAAAGXSGLfaLVNNAGLCLPGNVDWLPPDAYERSMALNFHAPVKLTYALLPALK-SARGRVVNVTSVDGVVALPSTAAYSASKHALEAFSDVLRAEMLPWDVNVVVVEPGTMRTPLAEAFADGWLRSFR-EAPAER 180
                 579999999997665543.33.233.....3467899************99999998654339***************************************9986.578*************************************************************9988777654.345555 PP

>> TIGR02415  23BDH: acetoin reductases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.4   0.0   1.7e-14   5.8e-12      24     191 ..       4     165 ..       1     184 [. 0.86

  Alignments for each domain:
  == domain 1    score: 43.4 bits;  conditional E-value: 1.7e-14
   TIGR02415  24 GfavavadlneetaketakelkekgtkavavkldvsdkseveeaveqaveklG..eldvlvnnaGvalvtpileiteeeleklynvnvkgvlfGiqaaaekfkklkhkGkiinaasiagvegspelsaysstkfavrgltqtaakeLakkgitvnayaPGivktemreei 191
                 Gf+v+ a + e+ a+  a       t a +v++d+++ + ve++v+   +  G  +l  lvnnaG++l   ++ + ++  e+  ++n ++ +    a   ++k    +G+++n +s+ gv++ p  +ays++k+a+ ++  +   e+ +  + v    PG+++t++ e  
  MMETSP1137-20121227|7076_1   4 GFKVVAACYTEAGAATFA------STTATIVVADLTTAEGVERVVKAGLAAAGxsGLFALVNNAGLCLPGNVDWLPPDAYERSMALNFHAPVKLTYALLPALKS--ARGRVVNVTSVDGVVALPSTAAYSASKHALEAFSDVLRAEMLPWDVNVVVVEPGTMRTPLAEAF 165
                 666666666665555443......468999***************987666662268889****************************9988777777777764..68*********************************************************98865 PP

>> TIGR01832  kduD: 2-deoxy-D-gluconate 3-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.6   0.0   2.1e-12   7.3e-10      51     194 ..      22     165 ..       2     183 .. 0.85

  Alignments for each domain:
  == domain 1    score: 36.6 bits;  conditional E-value: 2.1e-12
   TIGR01832  51 Grkflslkadladeeaakalvdeaveeag..kidilvnnaGiirredavefsekdwddvlnvnlkavfllsqavakkllkqGrkgkiiniasllsfqGGirvpsytasksavaGltkllanewakkginvnaiaPGyletnnteal 194
                  ++++ + adl+  e+++++v+  +++ag   +  lvnnaG+    +   ++   ++  + +n++a   l+ a+   +lk+  +g+++n++s+         ++y+ask+a+  ++ +l +e+   ++nv  + PG + t  +ea+
  MMETSP1137-20121227|7076_1  22 STTATIVVADLTTAEGVERVVKAGLAAAGxsGLFALVNNAGLCLPGNVDWLPPDAYERSMALNFHAPVKLTYALLP-ALKSA-RGRVVNVTSVDGVVALPSTAAYSASKHALEAFSDVLRAEMLPWDVNVVVVEPGTMRTPLAEAF 165
                 45667899***************999988546889***********9999******************99998765.66766.8*******9988887778889***********************************9877766 PP

>> TIGR02632  RhaD_aldol-ADH: rhamnulose-1-phosphate aldolase/alcohol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.1   0.3   1.3e-08   4.5e-06     461     599 ..      19     157 ..       5     195 .. 0.83

  Alignments for each domain:
  == domain 1    score: 23.1 bits;  conditional E-value: 1.3e-08
   TIGR02632 461 kfGadkavalkldvtdeeavkaafaevalayG..GvdivvnnaGiavskpleeteleeWdlnldilatGyflvareaarllrkqglggnlvfiasknavvakknalaysaakaaeahlvrllaielaelgirvntvaPdav 599
                  f + +a  +++d+t  e v+ ++++   a G  G+ ++vnnaG+    +++    + ++++++++      ++   a l   ++  g +v ++s+++vva +++ aysa+k a      +l +e+ +  + v  v+P ++
  MMETSP1137-20121227|7076_1  19 TFASTTATIVVADLTTAEGVERVVKAGLAAAGxsGLFALVNNAGLCLPGNVDWLPPDAYERSMALNFHAPVKLTY--ALLPALKSARGRVVNVTSVDGVVALPSTAAYSASKHALEAFSDVLRAEMLPWDVNVVVVEPGTM 157
                 5667778889**********999998555444339********************9*****99999876654444..44445567789**************************999*******************99876 PP

>> TIGR01500  sepiapter_red: sepiapterin reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.6   0.0   1.9e-08   6.3e-06      55     200 ..      23     161 ..      11     167 .. 0.87

  Alignments for each domain:
  == domain 1    score: 23.6 bits;  conditional E-value: 1.9e-08
   TIGR01500  55 lsvdlvsldleaakdvedllkaleesikkeeyerillinnaGtlgdvskrekelsDsknvqkyydsnvtslvvltsellkklkelqglektvvnlssLcaikpfkswalYCaskaaRdmffqvLaleek.edvkvLnYapGvlDtdm 200
                  +   v +dl +a++ve ++ka ++ ++  ++    l+nnaG       ++++    +  ++  ++n  + v lt  ll +lk   +    vvn+ s+  + +++s a Y ask a + f  vL  e    dv v+   pG + t +
  MMETSP1137-20121227|7076_1  23 TTATIVVADLTTAEGVERVVKAGLAAAGXSGL--FALVNNAGLCL---PGNVDWLPPDAYERSMALNFHAPVKLTYALLPALK---SARGRVVNVTSVDGVVALPSTAAYSASKHALEAFSDVLRAEMLpWDVNVVVVEPGTMRTPL 161
                 45566789**************9999999998..56889*99754...345667788999***********************...88889************************************99889999999999998865 PP

>> TIGR01831  fabG_rel: putative 3-oxoacyl-(acyl-carrier-protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   0.1     8e-08   2.8e-05      46     193 ..      21     168 ..       3     187 .. 0.84

  Alignments for each domain:
  == domain 1    score: 21.4 bits;  conditional E-value: 8e-08
   TIGR01831  46 qggnarllkfdvadrvavrevleadiaehga..yygvvlnagiardaafpalseedwdavietnldgfynvihplvmpmirarkggriitlasvsgvmgnrgqvnysaakagligatkalavelakrkitvnciapglidtemvaevekd 193
                   ++a ++  d++  + v  v++a +a+ g    + +v nag+        l  + ++  +  n+ +   +    ++p ++  + gr++ ++sv gv+       ysa+k  l   +  l  e+    + v  + pg + t + +   + 
  MMETSP1137-20121227|7076_1  21 ASTTATIVVADLTTAEGVERVVKAGLAAAGXsgLFALVNNAGLCLPGNVDWLPPDAYERSMALNFHAPVKLTYA-LLPALKSAR-GRVVNVTSVDGVVALPSTAAYSASKHALEAFSDVLRAEMLPWDVNVVVVEPGTMRTPLAEAFADG 168
                 456788899999999999999***999998533799************************99999998877665.567777655.7*****************************************************99988776655 PP

>> TIGR03325  BphB_TodD: cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   0.0   1.4e-07   4.8e-05     106     191 ..      75     161 ..      29     168 .. 0.91

  Alignments for each domain:
  == domain 1    score: 20.5 bits;  conditional E-value: 1.4e-07
   TIGR03325 106 eafdevfeinvkgyllavkaalpalvasrgsviftvsnagfypngggalytaakhavvglvkelayelapy.vrvngvapgglstdl 191
                 +a++  + +n ++ ++   a lpal ++rg v+   s  g  +    a y+a+kha+  +   l  e+ p  v v  v pg + t l
  MMETSP1137-20121227|7076_1  75 DAYERSMALNFHAPVKLTYALLPALKSARGRVVNVTSVDGVVALPSTAAYSASKHALEAFSDVLRAEMLPWdVNVVVVEPGTMRTPL 161
                 5777788889999999999************************************************999549999*******9877 PP

>> TIGR00068  glyox_I: lactoylglutathione lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.7   0.0   0.00035      0.12      19     142 ..     279     397 ..     275     401 .. 0.78
   2 ?    0.5   0.0      0.22        77      89     112 ..     504     527 ..     477     548 .. 0.83

  Alignments for each domain:
  == domain 1    score: 9.7 bits;  conditional E-value: 0.00035
   TIGR00068  19 lhtmlrvgdldksldfytevlGmkllrkkdfpeekfslaflgyedessaavieL.tynwgtekydlGn....gfGhiaiavddvykacervkakGgkvvrepgpvkggtkviafvkDPDGykiellekk 142
                  h+ + v  l++sl fy + lGm+      fp+      fl+ + +     + L   n  +++   G     g   + i   dv + + r+ ++G + +      ++ + +ia   DPD y + l+e k
  MMETSP1137-20121227|7076_1 279 SHVTVDVSSLKASLPFYEK-LGMQ-----AFPSSVAGAQFLAAGATGRRQPLLLlRENATMTE--RGPtwlaGMPRLCIYSTDVDADVRRLAEAGLEPMAPV--AEDAMAKIAAYYDPDRYVVYLIEFK 397
                 6888889999999999976.8997.....4777788888999998877665554045544443..33334559999*******************9977655..78999**************999866 PP

  == domain 2    score: 0.5 bits;  conditional E-value: 0.22
   TIGR00068  89 hiaiavddvykacervkakGgkvv 112
                  ++iav+dv +a ++  a+G +v 
  MMETSP1137-20121227|7076_1 504 SVTIAVNDVNAALDAAAAAGMRVE 527
                 57899*********9999998875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (561 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       109  (0.0265724); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                        24  (0.0058508); expected 4.1 (0.001)
Passed Fwd filter:                        12  (0.0029254); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.45u 0.12s 00:00:00.57 Elapsed: 00:00:00.64
# Mc/sec: 1156.97
//
Query:       MMETSP1137-20121227|7077_1  [L=146]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (146 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        44  (0.0107265); expected 82.0 (0.02)
Passed bias filter:                       44  (0.0107265); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.13s 00:00:00.28 Elapsed: 00:00:00.35
# Mc/sec: 550.58
//
Query:       MMETSP1137-20121227|7078_1  [L=341]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.1e-09   34.5   0.0    6.2e-09   33.4   0.0    1.4  1  TIGR00257 IMPACT_YIGZ: uncharacterized protein, YigZ family


Domain annotation for each model (and alignments):
>> TIGR00257  IMPACT_YIGZ: uncharacterized protein, YigZ family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.4   0.0   1.5e-12   6.2e-09      20     110 ..     176     267 ..     168     269 .. 0.83

  Alignments for each domain:
  == domain 1    score: 33.4 bits;  conditional E-value: 1.5e-12
   TIGR00257  20 kSrFitylarvekkddakkfikkikk..ehknAtHvvvafvigeeddilklg.fsDDgEPagtaGkPmLevlkkedlkdilavvvRYfGGilLG 110
                 kS F ++ arv++ ++++  i+++ +  +   AtH+++a+++ + +   ++    DDgE   +aG  + + l+  d +++l++v R++GGi LG
  MMETSP1137-20121227|7078_1 176 KSTFQAHFARVSTANQVQWAIRRLLEdrKVGRATHNIIAYRYFDAQRGVQVSdNDDDGE--NAAGGRLAALLELMDANNVLIIVSRWYGGIHLG 267
                 89*********************976115669**********98888777440345555..56788788888889999***************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (341 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        66  (0.0160897); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.26u 0.14s 00:00:00.40 Elapsed: 00:00:00.34
# Mc/sec: 1323.77
//
Query:       MMETSP1137-20121227|7079_1  [L=241]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.7e-74  247.4   0.0    4.9e-74  247.0   0.0    1.0  1  TIGR01036 pyrD_sub2: dihydroorotate oxidase
    1.3e-20   71.5   0.0    1.6e-20   71.2   0.0    1.1  1  TIGR01037 pyrD_sub1_fam: dihydroorotate dehydrogenase family protein
  ------ inclusion threshold ------
      0.023   12.6   0.1      0.056   11.4   0.0    1.6  1  TIGR01954 nusA_Cterm_rpt: transcription termination factor NusA, C-terminal duplication


Domain annotation for each model (and alignments):
>> TIGR01036  pyrD_sub2: dihydroorotate oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  247.0   0.0   3.6e-77   4.9e-74     134     353 ..      13     222 ..       3     224 .. 0.95

  Alignments for each domain:
  == domain 1    score: 247.0 bits;  conditional E-value: 3.6e-77
   TIGR01036 134 klpiGinlGknkkteaedakeDYkaslrkvlnladYlvvnvssPntpgLrdLqakealrelltavkeetddlrrvkrvpvlvkiaPDLseedlediadslveldidGviatnttvsrdl.vtgaknaeetGGlsGkpLqkksteiirrlakelkgrlpligvGGidsakealekikaGasLlqiYsaliykGpklvkeivkelekllkedgfgsvkeaiga 353
                    +GinlGknk  +++d ++DY        ++adYlvvnvssPntpgLrdLq+++ l +ll +v++e d l + + +p+l+k+aPDL++++ +diad+  e++idG+i+ ntt+ r+  + +a+ + e GGlsG pL + st ++r+l+++++g+++ligvGG++s+k+a+eki+ Gas +q+Ysal+y+G +lv  i+kel+ ll e+gf sv ea+g+
  MMETSP1137-20121227|7079_1  13 TKLLGINLGKNK--TSTDPTNDYV-------PVADYLVVNVSSPNTPGLRDLQKRKVLLDLLLSVRNEVDALPEPR-PPLLLKVAPDLNDSECQDIADVSREAKIDGIIVSNTTIARPEtLRSAH-KAEAGGLSGAPLFEPSTAVLRNLYQRTEGKMTLIGVGGVSSGKDAYEKIRNGASAVQLYSALVYEGTPLVSRIKKELASLLAENGFSSVDEAVGS 222
                 5679********..8999*****5.......89*************************************998876.****************************************98466666.55********************************************************************************************8 PP

>> TIGR01037  pyrD_sub1_fam: dihydroorotate dehydrogenase family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.2   0.0   1.2e-23   1.6e-20     116     298 ..      34     222 ..      17     224 .. 0.87

  Alignments for each domain:
  == domain 1    score: 71.2 bits;  conditional E-value: 1.2e-23
   TIGR01037 116 dkyvdaleLnvsCPhvkgaGieiGqdpelsaevvkavkekvdk......PvlakLsPnvtd..ivelakaveeaGaDgltlintlkgmkidikakkPiLanktGGlsGpaikpiavrvvydlykkld..iPiiGvGGitsaeDalefllaGasavqvGtavyyeg.kvfkkiieeliaflkeeglksieeliGl 298
                  +++d l +nvs P+    G++  q  +++ ++   v++ vd       P+l k++P+++d    ++a +  ea  Dg+ ++nt ++    ++++      ++GGlsG  +   +  v+ +ly++ +  + +iGvGG+ s +Da e +  Gasavq+ +a  yeg  ++ +i++el ++l e+g++s++e +G 
  MMETSP1137-20121227|7079_1  34 VPVADYLVVNVSSPNT--PGLRDLQKRKVLLDLLLSVRNEVDAlpeprpPLLLKVAPDLNDseCQDIADVSREAKIDGIIVSNTTIARPETLRSA---HKAEAGGLSGAPLFEPSTAVLRNLYQRTEgkMTLIGVGGVSSGKDAYEKIRNGASAVQLYSALVYEGtPLVSRIKKELASLLAENGFSSVDEAVGS 222
                 5678888999999986..57777788888888888888888755555559*******999844689******************99987666655...56789*****9999889999999999988789***********************************8999***********************95 PP

>> TIGR01954  nusA_Cterm_rpt: transcription termination factor NusA, C-terminal duplication
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   4.1e-05     0.056       1      19 [.     200     218 ..     200     219 .. 0.92

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 4.1e-05
   TIGR01954   1 ideeiaqlLveeGfstvEd 19 
                 i +e+a lL+e Gfs+v++
  MMETSP1137-20121227|7079_1 200 IKKELASLLAENGFSSVDE 218
                 5689*************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (241 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        94  (0.0229157); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.24u 0.16s 00:00:00.40 Elapsed: 00:00:00.34
# Mc/sec: 935.57
//
Query:       MMETSP1137-20121227|7081_1  [L=221]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (221 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        67  (0.0163335); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.16s 00:00:00.39 Elapsed: 00:00:00.77
# Mc/sec: 378.83
//
Query:       MMETSP1137-20121227|7082_1  [L=234]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (234 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       171  (0.041687); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.14s 00:00:00.34 Elapsed: 00:00:00.37
# Mc/sec: 834.74
//
Query:       MMETSP1137-20121227|7083_1  [L=236]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.026   11.1   1.5      0.036   10.6   1.0    1.2  1  TIGR03402 FeS_nifS: cysteine desulfurase NifS


Domain annotation for each model (and alignments):
>> TIGR03402  FeS_nifS: cysteine desulfurase NifS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   1.0   8.9e-06     0.036     311     341 ..      39      69 ..      22      80 .. 0.86

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 8.9e-06
   TIGR03402 311 egiaassGsaCtsgslepshvlramgvpaev 341
                 + i + +G+aC+++s ep hv r+  ++a++
  MMETSP1137-20121227|7083_1  39 SSINTPTGTACATSSCEPYHVTRTSCITATI 69 
                 678899****************998888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (236 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        70  (0.0170648); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.23u 0.15s 00:00:00.38 Elapsed: 00:00:00.28
# Mc/sec: 1112.48
//
Query:       MMETSP1137-20121227|7085_1  [L=166]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (166 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       145  (0.0353486); expected 82.0 (0.02)
Passed bias filter:                      130  (0.0316919); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.14s 00:00:00.31 Elapsed: 00:00:00.36
# Mc/sec: 608.62
//
Query:       MMETSP1137-20121227|7086_1  [L=334]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (334 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        72  (0.0175524); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.14s 00:00:00.39 Elapsed: 00:00:00.73
# Mc/sec: 603.90
//
Query:       MMETSP1137-20121227|7087_1  [L=327]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (327 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       108  (0.0263286); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.15s 00:00:00.43 Elapsed: 00:00:00.61
# Mc/sec: 707.55
//
Query:       MMETSP1137-20121227|7088_1  [L=219]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (219 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       179  (0.0436373); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.16s 00:00:00.36 Elapsed: 00:00:00.34
# Mc/sec: 850.17
//
Query:       MMETSP1137-20121227|7089_1  [L=619]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   5.4e-123  409.5   0.0   4.5e-102  340.5   0.0    2.9  2  TIGR01536 asn_synth_AEB: asparagine synthase (glutamine-hydrolyzing)
    3.6e-64  215.3   0.0    3.9e-37  126.0   0.0    3.1  3  TIGR03108 eps_aminotran_1: exosortase A system-associated amidotransferase 1
    5.1e-55  184.6   0.1    1.5e-26   90.6   0.0    3.1  3  TIGR03104 trio_amidotrans: asparagine synthase family amidotransferase
    3.5e-11   40.9   0.0    8.5e-11   39.7   0.0    1.6  1  TIGR01134 purF: amidophosphoribosyltransferase
    1.4e-06   24.9   0.0    2.2e-06   24.3   0.0    1.2  1  TIGR01135 glmS: glutamine-fructose-6-phosphate transaminase (isomerizing)


Domain annotation for each model (and alignments):
>> TIGR01536  asn_synth_AEB: asparagine synthase (glutamine-hydrolyzing)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  340.5   0.0  5.4e-105  4.5e-102       1     384 [.      48     421 ..      48     431 .. 0.94
   2 !   65.6   0.0   1.2e-21   9.6e-19     438     517 .]     423     513 ..     418     513 .. 0.84

  Alignments for each domain:
  == domain 1    score: 340.5 bits;  conditional E-value: 5.4e-105
   TIGR01536   1 CgiagivdlkakakeeeeaikemletlahRGPDaegvwkde..keenailghrRLaiidlsegaQPlsnek.evvivfnGEIYNheeLreeleekGyeFetksDtEViLaayeewgeelverLeGmFAfalwdekkgelflaRDrlGikPLYyase.qgkllfaSEiKallalk..eikaeldkealaelltlqlvptektlfkevkelepakaldgeekleeywevekeevkeseeelveelrelledavkkrlvadvpvgvllSGGlDSslvaaiakkeak............sevktFsigfedskdldeskaarkvadelgtehkevliseeevlkeleevilale..eptairasiplyllsklarekgvkVvLsGeGaDElfgGYeyfreakaeeale 384
                 Cg+++i ++k   +  + +   ++++++hRGPD++g++  +  + +   ++h+RLai+d  +g+QPl +++ +  + +nGEIYNh+eLr +l+++   F+t+sD+EVi+++y+e+g ++ ++L+G+FAf+++dek+gel++aRD++Gi  +Y+++  +g+  f+SE+K l+a+   +++++++++++++  +  +    k+++  ++ +e+ak+     +le                    +r++++++v+krl+advp gvllSGGlDSslva+++++  +            +++k+Fsig+e+ +dl+   aa+kvad++gteh+ ++++ +e+++++ +vi++le  ++t+ira +p++ll+++++++g+k+v+sGeGaDE ++GY yf++a+++ +l+
  MMETSP1137-20121227|7089_1  48 CGFLAIANSKLSPEALRLQTLTLQRLVRHRGPDGSGIHVIVgdDGSCSSVAHERLAIVDPLSGNQPLFSHDrSRSLSVNGEIYNHKELRSKLKDQ-TPFRTESDCEVIVHLYDEVGVDTASKLDGDFAFVILDEKTGELYAARDPIGINSMYMGTGlDGSTWFSSEAKPLVAAGciDVEVFPPGHYYTSSAKKLV----KYYNPAWRSVEAAKEP---LDLE-------------------LVRKTFIKSVEKRLMADVPFGVLLSGGLDSSLVASVIARVRRerflqngivddlKPLKSFSIGLEGAPDLE---AAKKVADFIGTEHYGFTFTVQEGIDAVSDVIYHLEtyDVTTIRAGTPMFLLARKIKAMGIKMVMSGEGADETLAGYLYFHKAPNATELH 421
                 99999999999888855677789**************9998734556689*********************988*******************99.***********************************************************99****************999***********99988885....7999999999999986...4555...................49**********************************99999899***************************...************************************************************************************99987 PP

  == domain 2    score: 65.6 bits;  conditional E-value: 1.2e-21
   TIGR01536 438 ellrldlelllsdllrakDrvsmahslEvRvPflDkelvelalsippelklr........dgkeKvlLreaaee....llPeeileRkKeaf 517
                 el+r+  +l+ +d+lra+ +++mah+lE+RvPflD++l+++++si+pe k+         +  eK+lLr+a++     +lP+e+l+R+Ke+f
  MMETSP1137-20121227|7089_1 423 ELVRKIDALHSYDCLRAN-KATMAHGLEARVPFLDEDLLDVIMSIDPEFKMIkkgpkggdQYLEKWLLRKAFDVeeapYLPREVLWRQKEQF 513
                 5566666788899*****.****************************98875333433334579********877799************99 PP

>> TIGR03108  eps_aminotran_1: exosortase A system-associated amidotransferase 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  126.0   0.0   4.8e-40   3.9e-37       1     173 [.      47     223 ..      47     231 .. 0.92
   2 !   51.3   0.0     2e-17   1.6e-14     216     377 ..     236     411 ..     222     428 .. 0.74
   3 !   34.6   0.0   2.2e-12   1.8e-09     499     588 ..     439     540 ..     434     547 .. 0.81

  Alignments for each domain:
  == domain 1    score: 126.0 bits;  conditional E-value: 4.8e-40
   TIGR03108   1 mcGiagifdlegkreidrellkrmnealahrGPdeegvhvepG.....iglghrrlsiidlaggkqPlanedgsvvvvfnGeiynfkelvkelealGhqfrtksdtevivhaWeeWGedcverlrGmfafalwdrkketlflardrlgvkPlyyalledGalifgselkallahpsle 173
                 mcG  +i + + + e  r +  ++++ ++hrGPd+ g+hv  G      +++h rl+i+d  +g+qPl+++d+s  +  nGeiyn+kel+++l+     frt+sd evivh ++e G+d+ ++l G faf++ d+k  +l+ ard +g+  +y+++  dG+  f+se k l+a   ++
  MMETSP1137-20121227|7089_1  47 MCGFLAIANSKLSPEALRLQTLTLQRLVRHRGPDGSGIHVIVGddgscSSVAHERLAIVDPLSGNQPLFSHDRSRSLSVNGEIYNHKELRSKLKDQ-TPFRTESDCEVIVHLYDEVGVDTASKLDGDFAFVILDEKTGELYAARDPIGINSMYMGTGLDGSTWFSSEAKPLVAAGCID 223
                 9******99988888888888889999************976533333579******************************************987.68************************************************************************9877666 PP

  == domain 2    score: 51.3 bits;  conditional E-value: 2e-17
   TIGR03108 216 akaeprqyWdvsfaaeaslseeeleeelierlkeavelrlvadvPlGaflsGGvdssavvallaklse............ePvktcsiafddaafdeaeyakkvaeryktehkvetve.addfdlvdrla...glydePfadssalPtyrvce.larkrvtvalsGdGgdelfaGyrry 377
                 + ++ ++y++ ++ + ++++e    e + + + ++ve rl+advP+G +lsGG+dss v +++a+  +            +P+k+ si+++ a     e akkva+  +teh+  t + ++ +d v  ++   + yd      +  P + + + + +  +++++sG+G+de++aGy  +
  MMETSP1137-20121227|7089_1 236 SAKKLVKYYNPAWRSVEAAKEPLDLELVRKTFIKSVEKRLMADVPFGVLLSGGLDSSLVASVIARVRRerflqngivddlKPLKSFSIGLEGAPD--LEAAKKVADFIGTEHYGFTFTvQEGIDAVSDVIyhlETYDVTTIR-AGTPMFLLARkIKAMGIKMVMSGEGADETLAGYLYF 411
                 556788999999998888877777777788899****************************999875422222233333469********99865..5569***********977655144566665543111456655443.4579998876155668*****************654 PP

  == domain 3    score: 34.6 bits;  conditional E-value: 2.2e-12
   TIGR03108 499 vdrasmavglevrvPlldhrlvewaaklpsslklrga..eG......kyllkkal....epylpedvlyrkkmGfsvPla.eWlrGPlkervralvssevlae 588
                  ++a+ma+gle+rvP+ld  l++ + ++  ++k+ ++  +G      k+ll+ka+    +pylp +vl+r+k  fs  +  +W+ G lk+++ a+v++  +a+
  MMETSP1137-20121227|7089_1 439 ANKATMAHGLEARVPFLDEDLLDVIMSIDPEFKMIKKgpKGgdqyleKWLLRKAFdveeAPYLPREVLWRQKEQFSDGVGyNWIDG-LKAHANAVVTDADMAT 540
                 5789*****************************9654223345555589999987333358***************9986368877.8888888888887766 PP

>> TIGR03104  trio_amidotrans: asparagine synthase family amidotransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.6   0.0   1.9e-29   1.5e-26      22     175 ..      69     226 ..      46     241 .. 0.83
   2 !   64.3   0.0   1.7e-21   1.4e-18     243     386 ..     261     414 ..     240     434 .. 0.79
   3 !   26.2   0.0     6e-10   4.9e-07     459     497 ..     438     476 ..     427     514 .. 0.86

  Alignments for each domain:
  == domain 1    score: 90.6 bits;  conditional E-value: 1.9e-29
   TIGR03104  22 rmaaelakrGPdaeGvfa....qgk.valGhrrlkiidlseasqqPmvdaelglalvfnGaiynykelreelealGyrffsegdtevilkayhawGeelvsrleGmfafaiwerdsgrlllardrlGikPlylae.dekrlrfasslpallaaggvdtki 175
                 +++  +++rGPd +G+++    +g+  ++ h rl+i+d   +++qP++ ++ + +l  nG iyn+kelr+ l+++   f +e+d evi++ y + G +  s+l G faf+i ++++g+l  ard +Gi  +y+ +  +++  f+s+ + l+aag +d ++
  MMETSP1137-20121227|7089_1  69 TLQRLVRHRGPDGSGIHVivgdDGScSSVAHERLAIVDP-LSGNQPLFSHDRSRSLSVNGEIYNHKELRSKLKDQT-PFRTESDCEVIVHLYDEVGVDTASKLDGDFAFVILDEKTGELYAARDPIGINSMYMGTgLDGSTWFSSEAKPLVAAGCIDVEV 226
                 23455789********97433334425799********5.4689****************************9985.8******************************************************9762578999**************9887 PP

  == domain 2    score: 64.3 bits;  conditional E-value: 1.7e-21
   TIGR03104 243 davlealrlavkrrlvadvpvGvllsGGldssllvallaeag.........ved...lktfsvGfedvggekgdefeysdliaerfetrhhkllipeeevlealpeavaamsePmvsh..davafyllseev.skevkvvqsGqGadevfaGyhwyPkl 386
                 + v++++ ++v++rl+advp GvllsGGldssl+ +++a++          v+d   lk+fs+G+e +++ +      +  +a+   t+h  ++ + +e ++a+++ + ++    v+       ++ll++++ +  +k+v+sG Gade +aGy ++ k 
  MMETSP1137-20121227|7089_1 261 ELVRKTFIKSVEKRLMADVPFGVLLSGGLDSSLVASVIARVRrerflqngiVDDlkpLKSFSIGLEGAPDLE-----AAKKVADFIGTEHYGFTFTVQEGIDAVSDVIYHLETYDVTTirAGTPMFLLARKIkAMGIKMVMSGEGADETLAGYLYFHKA 414
                 56889999****************************999875112221112233333689999999988755.....567899999***********************99888776511566799***99935679*****************99887 PP

  == domain 3    score: 26.2 bits;  conditional E-value: 6e-10
   TIGR03104 459 rvdnmtmawGlearvPfldhelvelaariPaelklkdeG 497
                 r +  tma GlearvPfld +l ++ ++i +e+k+ ++G
  MMETSP1137-20121227|7089_1 438 RANKATMAHGLEARVPFLDEDLLDVIMSIDPEFKMIKKG 476
                 77889*****************************98776 PP

>> TIGR01134  purF: amidophosphoribosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.7   0.0     1e-13   8.5e-11      82     218 ..     109     236 ..      48     250 .. 0.81

  Alignments for each domain:
  == domain 1    score: 39.7 bits;  conditional E-value: 1e-13
   TIGR01134  82 eeaqPlvvssavgglalaHNGnlvnaeelreeleeegrkfntssDsevllallaeeeeskeelekavaevlervkGaYalvlmsee..klvavrDPvGvrPLvlgrkedg.yvvaSEsvAld.lgaelvrdvepgevvvlk 218
                 +  qPl+ + +  + +l+ NG++ n +elr++l+++ + f+t+sD ev+++l  e        ++    + +++ G +a+v+++e+  +l+a+rDP G+  + +g+  dg + ++SE   l  +g   v+   pg  ++ +
  MMETSP1137-20121227|7089_1 109 SGNQPLFSHDR--SRSLSVNGEIYNHKELRSKLKDQ-TPFRTESDCEVIVHLYDE---V---GVD----TASKLDGDFAFVILDEKtgELYAARDPIGINSMYMGTGLDGsTWFSSEAKPLVaAGCIDVEVFPPGHYYTSS 236
                 5679**99887..469*******************5.6*************9974...2...122....335688*****9998763369***************877776899***987764444434444566665544 PP

>> TIGR01135  glmS: glutamine-fructose-6-phosphate transaminase (isomerizing)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.3   0.0   2.7e-09   2.2e-06      86     200 ..     113     219 ..      91     266 .. 0.73

  Alignments for each domain:
  == domain 1    score: 24.3 bits;  conditional E-value: 2.7e-09
   TIGR01135  86 PHvdekgeiavvhNGiieNykelreelekkgvefkSdTDtEviahlieeelkeeedlleavqkalkklrGayalavldkdepeklvaarke...sPLivglg.egenfvaSdvtallev 200
                 P ++++++  +  NG i N+kelr++l+     f+ + D Evi+hl +e              + +kl+G +a+++ld+++ e l+aar       + +g+g +g + ++S++++l+++
  MMETSP1137-20121227|7089_1 113 PLFSHDRSRSLSVNGEIYNHKELRSKLKD-QTPFRTESDCEVIVHLYDEVGV----------DTASKLDGDFAFVILDEKTGE-LYAARDPigiNSMYMGTGlDGSTWFSSEAKPLVAA 219
                 5556666667778**************77.789*************876544..........46789******9999988766.*****852223466777745678888888888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (619 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       106  (0.0258411); expected 82.0 (0.02)
Passed bias filter:                      101  (0.0246221); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.59u 0.17s 00:00:00.76 Elapsed: 00:00:00.67
# Mc/sec: 1219.42
//
Query:       MMETSP1137-20121227|7090_1  [L=1351]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1351 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       131  (0.0319356); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.79u 0.18s 00:00:00.97 Elapsed: 00:00:00.65
# Mc/sec: 2743.34
//
Query:       MMETSP1137-20121227|7092_1  [L=257]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (257 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       142  (0.0346173); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                        19  (0.00463189); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.13s 00:00:00.42 Elapsed: 00:00:00.40
# Mc/sec: 848.03
//
Query:       MMETSP1137-20121227|7093_1  [L=258]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (258 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       142  (0.0346173); expected 82.0 (0.02)
Passed bias filter:                      125  (0.0304729); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.14s 00:00:00.36 Elapsed: 00:00:00.36
# Mc/sec: 945.92
//
Query:       MMETSP1137-20121227|7094_1  [L=140]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (140 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        60  (0.014627); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.15s 00:00:00.32 Elapsed: 00:00:00.46
# Mc/sec: 401.71
//
Query:       MMETSP1137-20121227|7095_1  [L=177]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (177 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        96  (0.0234032); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.16s 00:00:00.33 Elapsed: 00:00:00.30
# Mc/sec: 778.74
//
Query:       MMETSP1137-20121227|7096_1  [L=123]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (123 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        99  (0.0241346); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.13s 00:00:00.29 Elapsed: 00:00:00.34
# Mc/sec: 477.49
//
Query:       MMETSP1137-20121227|7097_1  [L=145]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.8e-06   23.1   0.0    1.2e-05   22.8   0.0    1.0  1  TIGR01250 pro_imino_pep_2: proline-specific peptidases
      1e-05   22.9   0.0    1.3e-05   22.5   0.0    1.0  1  TIGR03695 menH_SHCHC: 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase
    2.2e-05   22.0   0.0    3.4e-05   21.4   0.0    1.2  1  TIGR01738 bioH: putative pimeloyl-BioC--CoA transferase BioH
    4.1e-05   20.9   0.0      5e-05   20.6   0.0    1.0  1  TIGR02427 protocat_pcaD: 3-oxoadipate enol-lactonase
    6.6e-05   19.9   0.0    8.6e-05   19.5   0.0    1.1  1  TIGR03056 bchO_mg_che_rel: putative magnesium chelatase accessory protein
     0.0027   14.9   0.0     0.0033   14.7   0.0    1.0  1  TIGR03611 RutD: pyrimidine utilization protein D


Domain annotation for each model (and alignments):
>> TIGR01250  pro_imino_pep_2: proline-specific peptidases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.8   0.0   1.8e-08   1.2e-05      27     124 ..      23     119 ..      15     127 .. 0.85

  Alignments for each domain:
  == domain 1    score: 22.8 bits;  conditional E-value: 1.8e-08
   TIGR01250  27 kllvlHGGPgssheyleslkellkegvevilYDQLGsgkSdqPddsdeklltidrfvdEleevrekLaldkfyllgqSwGglLaqeYalkyqqhlkgl 124
                  ++++HG   ss   + ++   l++   vi    +G  kS +P+  +  ++t         +  ++++l ++y  gq wGglL   Ya+k  ++++g 
  MMETSP1137-20121227|7097_1  23 TIVLVHGNIPSS-SLWRNVMPHLEQRGPVIAVNLFGFCKSGKPSLYNGMIYTPLDHTRNFPAFIDQVGLIQIYFAGQDWGGLLCTDYAVKHLDNVNGF 119
                 678888875444.45666666666657999999***********9999999999999999*******************************9999885 PP

>> TIGR03695  menH_SHCHC: 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.5   0.0     2e-08   1.3e-05       4     107 ..      23     127 ..      21     130 .. 0.86

  Alignments for each domain:
  == domain 1    score: 22.5 bits;  conditional E-value: 2e-08
   TIGR03695   4 vlvlLHGflgskedwqalieeleekfsvlalDLpgHGkskslk..ekeakdfeeaaqellkelleklkiekviLvGYSlGGRialalaleaperleglilesaspG 107
                 ++vl+HG + s++ w++++++le++ +v+a++L g  ks +++  +   ++  + +++      ++++  +++  G   GG + +++a+++ ++++g  l+   pG
  MMETSP1137-20121227|7097_1  23 TIVLVHGNIPSSSLWRNVMPHLEQRGPVIAVNLFGFCKSGKPSlyNGMIYTPLDHTRN-FPAFIDQVGLIQIYFAGQDWGGLLCTDYAVKHLDNVNGFNLVKPWPG 127
                 89**********************************9997664114556666677777.78889999****************************99988776666 PP

>> TIGR01738  bioH: putative pimeloyl-BioC--CoA transferase BioH
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   0.0   4.9e-08   3.4e-05       6      96 ..      23     122 ..      19     131 .. 0.82

  Alignments for each domain:
  == domain 1    score: 21.4 bits;  conditional E-value: 4.9e-08
   TIGR01738   6 klvLihGWglnaevfadlveeLsahftlslvDLPGyGds........aelralslaevaeailaqapakai.wlGWsLGGLvalhlalthpdkvrsLvlv 96 
                 ++vL+hG    ++++++++++L++  ++ +v+L G+ +s           ++l+      a ++q+    i + G   GGL+ +  a++h d+v++  lv
  MMETSP1137-20121227|7097_1  23 TIVLVHGNIPSSSLWRNVMPHLEQRGPVIAVNLFGFCKSgkpslyngMIYTPLDHTRNFPAFIDQVGLIQIyFAGQDWGGLLCTDYAVKHLDNVNGFNLV 122
                 79**********************************88522222222246788888889999999987665157999*****************987766 PP

>> TIGR02427  protocat_pcaD: 3-oxoadipate enol-lactonase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   0.0   7.3e-08     5e-05      25     108 ..      33     120 ..      12     124 .. 0.85

  Alignments for each domain:
  == domain 1    score: 20.6 bits;  conditional E-value: 7.3e-08
   TIGR02427  25 dlrlwdkvlealtkdfrvlryDkrGHGlS....dvpegpysiedladdvlallDalgiekaavcGlSlGGliaqaLaarrpdrvealv 108
                 + +lw++v+++l+++  v+++   G  +S        + y+  d++++  a +D++g+ ++ ++G   GGl+    a+++ d v+   
  MMETSP1137-20121227|7097_1  33 SSSLWRNVMPHLEQRGPVIAVNLFGFCKSgkpsLYNGMIYTPLDHTRNFPAFIDQVGLIQIYFAGQDWGGLLCTDYAVKHLDNVNGFN 120
                 568***********************99944423334568999****************************************98765 PP

>> TIGR03056  bchO_mg_che_rel: putative magnesium chelatase accessory protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.0   1.3e-07   8.6e-05      22      65 ..      15      58 ..       6      69 .. 0.87

  Alignments for each domain:
  == domain 1    score: 19.5 bits;  conditional E-value: 1.3e-07
   TIGR03056 22 deGpaaGPvllllhGagasshsfrklvpllaarfrvvapdlPGh 65
                + G a G +++l+hG   ss  +r+++p l +r  v+a++l G 
  MMETSP1137-20121227|7097_1 15 NVGLALGATIVLVHGNIPSSSLWRNVMPHLEQRGPVIAVNLFGF 58
                578899**********************************9874 PP

>> TIGR03611  RutD: pyrimidine utilization protein D
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0   4.8e-06    0.0033      13     115 ..      21     126 ..      14     137 .. 0.86

  Alignments for each domain:
  == domain 1    score: 14.7 bits;  conditional E-value: 4.8e-06
   TIGR03611  13 aevvvlssGLGGsgsywapqlevleqefrvvvyDhrGtgrspee.laed..ysiaalaadvlelldaldiekahvvGhalGgliglelalrkperlaklvlinaWs 115
                 + ++vl  G   s+s w + +  leq+  v+  +  G  +s++  l ++  y+  +  ++  + +d++++ ++ + G   Ggl+  + a ++ ++++   l+  W 
  MMETSP1137-20121227|7097_1  21 GATIVLVHGNIPSSSLWRNVMPHLEQRGPVIAVNLFGFCKSGKPsLYNGmiYTPLDHTRNFPAFIDQVGLIQIYFAGQDWGGLLCTDYAVKHLDNVNGFNLVKPWP 126
                 5689999******************************99998861555412333455789999***********************************99999995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (145 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        75  (0.0182838); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.19u 0.14s 00:00:00.33 Elapsed: 00:00:00.32
# Mc/sec: 598.08
//
Query:       MMETSP1137-20121227|7098_1  [L=87]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (87 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       104  (0.0253535); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.47
# Mc/sec: 244.32
//
Query:       MMETSP1137-20121227|7099_1  [L=205]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (205 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        83  (0.020234); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.14s 00:00:00.36 Elapsed: 00:00:00.35
# Mc/sec: 773.08
//
Query:       MMETSP1137-20121227|7100_1  [L=438]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.1e-49  165.8   0.0    3.5e-49  165.0   0.0    1.3  1  TIGR00493 clpP: ATP-dependent Clp protease, proteolytic subunit ClpP


Domain annotation for each model (and alignments):
>> TIGR00493  clpP: ATP-dependent Clp protease, proteolytic subunit ClpP
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  165.0   0.0   8.5e-53   3.5e-49      19     191 ..      26     208 ..      19     209 .. 0.94

  Alignments for each domain:
  == domain 1    score: 165.0 bits;  conditional E-value: 8.5e-53
   TIGR00493  19 diysrllkeriillsgevedevansivaqllfleaedpekdislyinspGGsitaGl.........aiydtmqfikpdvsticiGlaasmGafllaaGakGkrlalpnsrimihqplGG.aqGqasdieiqakeilklkkklnellaektGqslekiekdterdfflsaeeakeyGlidkvlt 191
                 d+ s ll++ri++l+  ++ +v+++i+ +ll+l+ e +ek i +yinspG +   G+         ai dtm +++p ++t+ +G+a  + a+lla+G kG+r +lp++ +m+hqp G  aqGqasdi i+a+e+l+ +k+  e++++ tG ++ek+++dt+r  +l a++a++yG++dk+++
  MMETSP1137-20121227|7100_1  26 DMPSLLLNNRIVYLGMPINAQVTELIIGELLYLQYESTEKPIIMYINSPGTTTEDGMpvgfeteafAIADTMSYVQPPIQTVLVGKAYGLAAMLLACGDKGQRSTLPYCTVMLHQPRGQqAQGQASDIAIKAREVLHNRKMALEIMSSATGVPMEKLARDTNRCLYLDAQQAVDYGIVDKIVK 208
                 67799*********************************************9988876555555555899************************************************9648***********************************************************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (438 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        82  (0.0199902); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.30u 0.12s 00:00:00.42 Elapsed: 00:00:00.56
# Mc/sec: 1014.23
//
Query:       MMETSP1137-20121227|7101_1  [L=389]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (389 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        74  (0.01804); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.15s 00:00:00.42 Elapsed: 00:00:00.55
# Mc/sec: 933.52
//
Query:       MMETSP1137-20121227|7102_1  [L=1057]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1057 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       102  (0.0248659); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.61u 0.15s 00:00:00.76 Elapsed: 00:00:00.54
# Mc/sec: 2583.56
//
Query:       MMETSP1137-20121227|7103_1  [L=416]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.7e-62  208.5   0.9    3.2e-62  208.2   0.6    1.0  1  TIGR03207 cyc_hxne_CoA_dh: cyclohexanecarboxyl-CoA dehydrogenase
    1.8e-31  107.3   0.0    5.5e-30  102.3   0.0    2.0  1  TIGR03204 pimC_large: pimeloyl-CoA dehydrogenase, large subunit
    3.6e-31  106.2   0.2    4.9e-31  105.8   0.1    1.1  1  TIGR04022 sulfur_SfnB: sulfur acquisition oxidoreductase, SfnB family
    4.3e-27   93.0   2.5      6e-27   92.5   1.7    1.1  1  TIGR03203 pimD_small: pimeloyl-CoA dehydrogenase, small subunit


Domain annotation for each model (and alignments):
>> TIGR03207  cyc_hxne_CoA_dh: cyclohexanecarboxyl-CoA dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  208.2   0.6   3.1e-65   3.2e-62      10     369 ..      47     408 ..      38     411 .. 0.95

  Alignments for each domain:
  == domain 1    score: 208.2 bits;  conditional E-value: 3.1e-65
   TIGR03207  10 ekarrfaaerlapgfkerdktrvldrellrdmgelgflgpelseeygglgvgclaagvlleeiaradlsvsyv.nllaslngqilaqharpeiakewlakliageallaialteprggsdaarlrlrierdgddyvlngektsisaadqadaavvfartgsveegargisallvpmdlpgitr.nrfdcigqraigrgsiffedvrvsadhllgdegkgfvqvmqgfdfsraliglqvlavaraaldetweyvaereafgkklsafqgvsfpladletqveaarllclrtlwlkdhglphtseaamckwwapklaydvihqcllshghggydrg.dleqrlrdvlglqigdgtaqimktiiar 369
                   +  f+++ l p   e d+ ++   e + +mgelg++g  ++eeygg+g+++la  + +eei+ +  s   +  +  sl  + + +++  e  + wl    +ge+l +  l+ep  gsdaa     ++  gd+yvlng k+ i+ a++a aa+v+a t   + + +g+sa+lv    pg +  ++ d  g ra   g ++fed rv+ + llg  g+gf   m  +d  r  i  q l++a+a+l+ + +y + r++f  ++++ q + f lad+  ++e+arll  r+  lk    p+t eaam k  a   a    h  + + g  gy ++ + e+ +rd    +i +gt++i +++ia 
  MMETSP1137-20121227|7103_1  47 TMCVEFSQNVLKPIAGELDREHRYPAEQIAQMGELGLMGVMVPEEYGGVGMDTLAYAIAMEEISAGCASTGVImSVNNSLYCDPVLRYGTEEQKQTWLVPYASGEKLGCFGLSEPGNGSDAAAAATTAVESGDEYVLNGTKAWITNAHDAHAAIVIATTD-KSLKHKGLSAFLVEKGTPGFSVgKKEDKLGIRASSTGNLIFEDCRVPKANLLGRLGDGFKLAMSTLDGGRIGIAGQALGIAKASLECAAHYAQTRKTFDAPIAKHQAIQFLLADMAVRLESARLLTHRAANLKSAKRPYTKEAAMAKLAASEAATANAHAAIQVLGGMGYVTEmPAERYYRDARITEIYEGTSEIQRLVIAG 408
                 556789999999*999*************************************************99998765256789*99*9************************************************************************9886.456789*************9862567899*********************************************************************************************************************************************9997889999*******************985 PP

>> TIGR03204  pimC_large: pimeloyl-CoA dehydrogenase, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.3   0.0   5.4e-33   5.5e-30      59     392 ..      88     410 ..      77     413 .. 0.84

  Alignments for each domain:
  == domain 1    score: 102.3 bits;  conditional E-value: 5.4e-33
   TIGR03204  59 wpkqyggtgwtsvqdyifneelqaapapqplafgv..smvgpviytfgneeqkkrflprianvddwwcqgfsepgsgsdlaslktkaekkgdkyiingqktwttlaqhadlifclcrtdatakkqegisfilvdmkskgitvrpiqtidg..gsevnevffddvevplenlvgeenkgwdyakfllgnertgia..rvgvskerirrikelaakvesggkpviedakfreklaaveielkaleltqlrvvadegkhgkgkpnpassvlkikgseiqqattellmevigpfaapydvhgddgsneamdwtaqiapsyf.nnrkvsiyggsneiqrniiakav 392
                  p +ygg g  ++   i  ee+ a  a + + + v  s+    +  +g+eeqk+ +l   a  +   c g+sepg gsd a+  t a + gd+y++ng k+w t a+ a   ++++ td +  k++g+s  lv+  + g +v   +   g  +s   +++f+d  vp  nl+g+   g+  a   l   r gia   +g++k  ++   + a   ++   p+ + ++++  la + + l +  l   r  a + k  k      +++ k+  se   a +   ++v+g +    ++                a  y+ + r   iy g+ eiqr +ia  v
  MMETSP1137-20121227|7103_1  88 VPEEYGGVGMDTLAYAIAMEEISAGCASTGVIMSVnnSLYCDPVLRYGTEEQKQTWLVPYASGEKLGCFGLSEPGNGSDAAAAATTAVESGDEYVLNGTKAWITNAHDAHAAIVIATTDKSL-KHKGLSAFLVEKGTPGFSVGKKEDKLGirASSTGNLIFEDCRVPKANLLGRLGDGFKLAMSTLDGGRIGIAgqALGIAKASLECAAHYAQTRKTFDAPIAKHQAIQFLLADMAVRLESARLLTHR--AANLKSAKRPYTKEAAMAKLAASEAATANAHAAIQVLGGMGYVTEM---------------PAERYYrDARITEIYEGTSEIQRLVIAGQV 410
                 699*********************9999998877744677777789*********************************************************************9999876.578***************98776544422455677899********************************944589****************************************999987777..55677777777778889999****9999999999999876432222...............122333144555566666666666666655 PP

>> TIGR04022  sulfur_SfnB: sulfur acquisition oxidoreductase, SfnB family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  105.8   0.1   4.8e-34   4.9e-31      22     362 ..      58     392 ..      37     398 .. 0.82

  Alignments for each domain:
  == domain 1    score: 105.8 bits;  conditional E-value: 4.8e-34
   TIGR04022  22 aeeaaeRDrerrlPveeldafsqsGLwgitvPrayGGaevsaatlaeviaiisaaDpslgqipq.nhfallevlrlegseeqkrfffeevlaGeRfgn.alseagtk.nvkelktrlerdgdglrldGrkfystGalfahwipvlaldeegrev....lafvprdapGltviddWsgfGqrttasGtvlldevrveaeevvp.vqkafdrptlagpvaqliqaaidvGiaraaledtlafvrekarpwidsgvekasdDpltiaevgelairleaaeallerageavdaaaaepteesvaaasiavaeakvltteialeaaskLfelaGtrstlaelnldRhWRnaRth 362
                 ++ a e Dre+r P+e++ ++ + GL+g+ vP++yGG ++++ + a  ++ isa  +s g i   n+  + + +   g+eeqk+++     +Ge++g   lse g+  ++++++t+ +++gd+++l+G+k++ t a  ah   v+a+ ++  ++      +v++++pG++v    + +G r+ + G +++++ rv++++++  + + f+ +  +     +  a+  +Gia+a+le + ++ ++  r  +d+ ++k +   +    ++++a+rle a+ l +ra++   +a++ p ++++a a       k++++e+a   a+  +++ G  +  +e+  +R++R+aR+ 
  MMETSP1137-20121227|7103_1  58 KPIAGELDREHRYPAEQIAQMGELGLMGVMVPEEYGGVGMDTLAYAIAMEEISAGCASTGVIMSvNNSLYCDPVLRYGTEEQKQTWLVPYASGEKLGCfGLSEPGNGsDAAAAATTAVESGDEYVLNGTKAWITNAHDAHAAIVIATTDKSLKHkglsAFLVEKGTPGFSVGKKEDKLGIRASSTGNLIFEDCRVPKANLLGrLGDGFKLAMSTLDGGRIGIAGQALGIAKASLECAAHYAQT--RKTFDAPIAKHQAIQF---LLADMAVRLESARLLTHRAANL-KSAKR-PYTKEAAMA-------KLAASEAATANAHAAIQVLGGMGYVTEMPAERYYRDARIT 392
                 5567889**********************************99999999***********9864388888999999********************96378998765267778899999*********************9888887665544434434569*************************************996256788877666666788889999***********999876..8899999988765555...567899**********999986.44443.444444555.......5555555555555556667778888999999999999985 PP

>> TIGR03203  pimD_small: pimeloyl-CoA dehydrogenase, small subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.5   1.7   5.8e-30     6e-27      44     360 ..      76     394 ..      68     409 .. 0.88

  Alignments for each domain:
  == domain 1    score: 92.5 bits;  conditional E-value: 5.8e-30
   TIGR03203  44 gklaeqgllglpfseadggfgagavetmivmealgkalvlepylatv...vigggflrragsaaqkaaylpgiidgsktlafaqleknsrydlgdvsttakkkgdgwvidgekfvvlngeaadtlivtartkgarrdrtgigvflvpadakgvtkkgyptqdglhaa...ditltgvevgadaaigdpenaleliervvddarvalcaeavglmdeslkttveyiktrkqfgvaigsfqvlqhraadmfvaveqarsmalfatmaadfddake.ranaiaaakvqigkslkfvgqqsiqlhggigmtmeakighyfkrltmiek 360
                 +++ e gl+g+   e+ gg g  ++   i me +         + +v   + +   lr  g+++qk ++l     g k  +f   e     d +  +tta  +gd +v++g k  + n   a++ iv a t  + + ++g+  flv  ++ g +      + g++a+   ++ +   +v     +g   ++++l    +d  r+ ++ +a+g+   sl+++ +y +trk f  +i   q++q   adm v  e ar +   +  aa+++ ak   ++  a ak+   ++     + +iq+ gg+g   e+    y++   + e 
  MMETSP1137-20121227|7103_1  76 AQMGELGLMGVMVPEEYGGVGMDTLAYAIAMEEISAGCASTGVIMSVnnsLYCDPVLRY-GTEEQKQTWLVPYASGEKLGCFGLSEPGNGSDAAAAATTAVESGDEYVLNGTKAWITNAHDAHAAIVIATTDKSLK-HKGLSAFLVEKGTPGFSVGKKEDKLGIRASstgNLIFEDCRVPKANLLGRLGDGFKLAMSTLDGGRIGIAGQALGIAKASLECAAHYAQTRKTFDAPIAKHQAIQFLLADMAVRLESARLL---THRAANLKSAKRpYTKEAAMAKLAASEAATANAHAAIQVLGGMGYVTEMPAERYYRDARITEI 394
                 578899**************************997766655554444221778888876.7899******99*********************************************************9877655.67***************999999999998733367899999999999*********************************************************************99955...56788888888624666778999999***************************9986554443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (416 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       144  (0.0351048); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.36u 0.16s 00:00:00.52 Elapsed: 00:00:00.49
# Mc/sec: 1120.56
//
Query:       MMETSP1137-20121227|7104_1  [L=418]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (418 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        96  (0.0234032); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.17s 00:00:00.48 Elapsed: 00:00:00.46
# Mc/sec: 1199.38
//
Query:       MMETSP1137-20121227|7105_1  [L=473]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (473 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        94  (0.0229157); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.15s 00:00:00.47 Elapsed: 00:00:00.54
# Mc/sec: 1156.13
//
Query:       MMETSP1137-20121227|7106_1  [L=133]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.1e-05   20.6   0.1       0.02   10.7   0.0    2.1  2  TIGR00870 trp: transient-receptor-potential calcium channel protein
  ------ inclusion threshold ------
      0.027   10.8   0.0      0.038   10.3   0.0    1.1  1  TIGR03960 rSAM_fuse_unch: radical SAM family uncharacterized protein


Domain annotation for each model (and alignments):
>> TIGR00870  trp: transient-receptor-potential calcium channel protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.5   0.0   4.7e-05     0.096     130     159 ..      20      49 ..      17      53 .. 0.91
   2 !   10.7   0.0   9.9e-06      0.02     130     158 ..      53      81 ..      49     100 .. 0.87

  Alignments for each domain:
  == domain 1    score: 8.5 bits;  conditional E-value: 4.7e-05
   TIGR00870 130 kgitalilAihkqnyeivklLlekgasvea 159
                 +g t+l  A+    + +v+lLl+ ga+v a
  MMETSP1137-20121227|7106_1  20 NGRTPLLAAARFGHVRVVTLLLDAGAEVDA 49 
                 689************************987 PP

  == domain 2    score: 10.7 bits;  conditional E-value: 9.9e-06
   TIGR00870 130 kgitalilAihkqnyeivklLlekgasve 158
                  g t++++A+    ye+v+ Ll  ga ++
  MMETSP1137-20121227|7106_1  53 SGVTPIMVAAAAGHYECVQRLLGHGACIS 81 
                 699***********************998 PP

>> TIGR03960  rSAM_fuse_unch: radical SAM family uncharacterized protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   1.8e-05     0.038     348     395 ..      80     127 ..      77     130 .. 0.88

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 1.8e-05
   TIGR03960 348 lekvqkvrkssltfapeaGsqrlrdvinkgvteeeilkgakeafegGw 395
                 ++ v++  ks++ +a eaG qr+ + ++k  + e  ++ + + f + w
  MMETSP1137-20121227|7106_1  80 ISTVDDTGKSAMDWAREAGQQRVLELMEKHAAGEASVTVSPKGFFSSW 127
                 6789999**********************9999988888877777666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (133 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        84  (0.0204778); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.17u 0.13s 00:00:00.30 Elapsed: 00:00:00.31
# Mc/sec: 566.28
//
Query:       MMETSP1137-20121227|7107_1  [L=274]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (274 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        70  (0.0170648); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.15s 00:00:00.37 Elapsed: 00:00:00.40
# Mc/sec: 904.13
//
Query:       MMETSP1137-20121227|7108_1  [L=371]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.4e-81  269.6   0.0    1.1e-80  269.4   0.0    1.0  1  TIGR03670 rpoB_arch: DNA-directed RNA polymerase subunit B
    1.7e-11   40.3   0.1    6.3e-05   18.6   0.0    3.1  3  TIGR02013 rpoB: DNA-directed RNA polymerase, beta subunit


Domain annotation for each model (and alignments):
>> TIGR03670  rpoB_arch: DNA-directed RNA polymerase subunit B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  269.4   0.0   5.3e-84   1.1e-80       1     258 [.      99     367 ..      99     371 .] 0.94

  Alignments for each domain:
  == domain 1    score: 269.4 bits;  conditional E-value: 5.3e-84
   TIGR03670   1 vylnGkliGtvedpeelvekvrelrregklseevnvaykeetnevyintdaGrirrPllvvenGkpklteehveklkkg...eltfedlvkeGvieyldaeeeenayialseee.....lteehthleidpsailGivaslipyaehnssprntmeaamakqslGlyaanyklrldtrahllhypqvplvktrvlelieyderPagqnlvvavlsyeGyniedalvlnkasierglarsvffrtyeaeerr.ypgG..qedkfeiPeke 258
                 v++nG  +G + dp   v++     r  + s e +   +    e  +++  Gr  rP+++ve+ k  ++++h+e+l+++   e+t+   + +G+iey+d+eeee ++ia++ ++     +   +th+ei+ps+ilGi+as+ip+++hn+sprnt+++am kq++G+y +ny+lr+dt ah+l+ypq+pl  tr++  +++ e P+g n+ va+ +y+Gyn ed++++n++si+rg+ rsvf+r+y++ee++ + gG  q+++fe P++e
  MMETSP1137-20121227|7108_1  99 VFVNGXXVGIHXDPXXXVRTXXXXXRXXEXSXEXSXXRDIXXXEXXLFSXXGRCCRPIFIVEDQKLLIKKHHIEQLRNKastEFTWAKCIANGLIEYIDTEEEETTMIAMNLNDlspdnTMYRYTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNYQLRMDTLAHVLYYPQKPLGSTRAMTYLHFRELPSGINATVAIACYSGYNQEDSVIMNQSSIDRGFFRSVFYRSYKDEEKKtFHGGneQTERFERPQRE 367
                 8***************************************************************************97533489***************************9994444344569**************************************************************************************************************************99976378884345799999876 PP

>> TIGR02013  rpoB: DNA-directed RNA polymerase, beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.2   0.0   0.00017      0.35     513     535 ..      43      65 ..      36      78 .. 0.91
   2 !   12.0   0.0   3.1e-06    0.0063     586     646 ..     203     263 ..     155     271 .. 0.79
   3 !   18.6   0.0   3.1e-08   6.3e-05     748     807 ..     300     359 ..     294     369 .. 0.92

  Alignments for each domain:
  == domain 1    score: 6.2 bits;  conditional E-value: 0.00017
   TIGR02013 513 PietPeGpniGLinslstyakvn 535
                 P etPeG+ +GL++ l+  a ++
  MMETSP1137-20121227|7108_1  43 PAETPEGQAVGLVKNLALMAYIS 65 
                 89**************9988775 PP

  == domain 2    score: 12.0 bits;  conditional E-value: 3.1e-06
   TIGR02013 586 edlvearvkgevtlvekeevdymdvspkqvvsvaaaliPfLehDDanraLmGsnmqrqavP 646
                 + ++ +  ++ +  ++  + ++ ++ p++++++ a++iPf +h+ + r    s m +qa+ 
  MMETSP1137-20121227|7108_1 203 TTMIAMNLNDLSPDNTMYRYTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMG 263
                 45555666666666667778899***********************************976 PP

  == domain 3    score: 18.6 bits;  conditional E-value: 3.1e-08
   TIGR02013 748 elaLGknvlvafmpWeGynyeDailiserlvkdDvftsihieefeveardtklGeeeitr 807
                 el  G n  va   ++Gyn eD++++++  +   +f s++ + ++ e ++t +G +e t+
  MMETSP1137-20121227|7108_1 300 ELPSGINATVAIACYSGYNQEDSVIMNQSSIDRGFFRSVFYRSYKDEEKKTFHGGNEQTE 359
                 788899*********************************************999988876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (371 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        77  (0.0187713); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.32u 0.15s 00:00:00.47 Elapsed: 00:00:00.42
# Mc/sec: 1165.90
//
Query:       MMETSP1137-20121227|7109_1  [L=326]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.7e-23   80.6   8.1    5.2e-23   79.6   5.6    1.3  1  TIGR01622 SF-CC1: splicing factor, CC1-like family
    6.3e-16   56.4   0.0    6.3e-16   56.4   0.0    2.2  2  TIGR01628 PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family
    1.7e-10   38.9   0.0    5.1e-08   30.7   0.0    2.1  2  TIGR01661 ELAV_HUD_SF: ELAV/HuD family splicing factor
    9.7e-10   35.6   0.0    9.7e-10   35.6   0.0    1.8  2  TIGR01645 half-pint: poly-U binding splicing factor, half-pint family
    1.8e-07   28.2   0.0    0.00035   17.3   0.0    2.4  2  TIGR01648 hnRNP-R-Q: hnRNP-R, Q splicing factor family
    1.1e-05   23.1   0.0     0.0051   14.3   0.0    2.2  2  TIGR01659 sex-lethal: sex-lethal family splicing factor
    4.5e-05   19.9   0.4    4.5e-05   19.9   0.2    4.0  4  TIGR01642 U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor
    4.7e-05   20.4   0.0        0.1    9.4   0.0    2.2  2  TIGR01649 hnRNP-L_PTB: hnRNP-L/PTB/hephaestus splicing factor family


Domain annotation for each model (and alignments):
>> TIGR01622  SF-CC1: splicing factor, CC1-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.6   5.6     1e-25   5.2e-23      61     313 ..      55     305 ..      30     320 .. 0.75

  Alignments for each domain:
  == domain 1    score: 79.6 bits;  conditional E-value: 1e-25
   TIGR01622  61 drerrsrkrreserererekerrredevr....rkrkeredrrerrekeerlke.elteeeR.DartvfvlqlalklreRdlkEFFskvgkvrdvrlikDrnSrrSkGvaYvEFydvesvqlAlaltGqkllgvPvivqaseAEKNraakaatelsgdipnsiadlkLYvGnlhfnitEqeLrqiFepFGeielvqlqkDpetGrskGyGFiqFsdaeeakeAleklNG.lelAGReikvglasDvteesdaslaskfed 313
                  r+ +++k+r+++  r+re   + e +      r++ ++ ++r  ++ke  l++ e ++ +R  +  vfv  la    e  l + F++ g+v +v ++     +r kG a+v F+  + v +Al+l+G +l g+ ++vq+ +      ++  +e+s +   + + + ++vGn+     E  Lr+ F   G+i+ v+l    ++ r     Fi F++a+ a +A  kl G + l G  ++vg++     + +  +  +++d
  MMETSP1137-20121227|7109_1  55 KRKAKEKKERKRKERRQREAALKAEAKATgllpRQSAQEPSKRASKKKE-TLPNlEQAPFKRkGKNRVFVGHLAQSTSEASLCDLFQHCGQVVEVDMLYRTSTGRFKGSAFVAFKSAKNVLAALKLNGTMLEGKQIVVQPEQHSAPESVAPHKEKSPTLA-AKSSRSVFVGNVPAGADERGLRNTFRECGPIQRVKLLPAVKGIRP---AFIDFREAKAAEDAV-KLDGkFALNGNALQVGYSMR---KAAPLSSRRSQD 305
                 3344444444433333333333222222211113455555566666654.44331444445515778***************************************************************************999998888888886555.678899******************************988877554...7********999996.79999************433...222222333443 PP

>> TIGR01628  PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   4.5       1.3   6.7e+02     453     494 ..      29      75 ..       2     113 .. 0.27
   2 !   56.4   0.0   1.2e-18   6.3e-16      81     275 ..     112     313 ..     104     321 .. 0.78

  Alignments for each domain:
  == domain 1    score: -3.1 bits;  conditional E-value: 1.3
   TIGR01628 453 rlqaqgr....rnlnnr..nrnvlgnmnkkqqnaaskanqanvkaqpq 494
                  +q+++     +   n+  n+++ +++++k++++ +++ ++  + +  
  MMETSP1137-20121227|7109_1  29 ASQSSDSlanrKLSSNGvpNESM-EIQKRKAKEKKERKRKERRQREAA 75 
                 22222221111111111111111.111111111111111111111111 PP

  == domain 2    score: 56.4 bits;  conditional E-value: 1.2e-18
   TIGR01628  81 PslRksGvgNifvKnLdksidnkaLfdtFskfGnilsckvat.deeGkSkgYgfvhfedeesAkeAieklNgvllndkevyvgkfikksere.........atkekkftNlYvKnlddsvtedklrelFakfGeitSaivkkdeknrkrgfafvnyekaedAkkAveelngkkitlaatgkilyVgraqkra.....eReaelkakfeel 275
                 P + + G+  +fv  L +s  +++L d+F++ G+++ + +     +G+ kg +fv f+  +   +A+ klNg++l+ k+++v++ ++   +          +  +k    ++v n+++  +e  lr++F + G i  ++     k+     af+ + +a +A+ Av +l+gk      +g+ l Vg   ++a     +R +  +++++e+
  MMETSP1137-20121227|7109_1 112 PFK-RKGKNRVFVGHLAQSTSEASLCDLFQHCGQVVEVDMLYrTSTGRFKGSAFVAFKSAKNVLAAL-KLNGTMLEGKQIVVQPEQHSAPESvaphkekspTLAAKSSRSVFVGNVPAGADERGLRNTFRECGPIQRVKLLPAVKGIR--PAFIDFREAKAAEDAV-KLDGKFAL---NGNALQVGYSMRKAaplssRRSQDARKRRREK 313
                 544.569*******************************98752679***********9988888776.8*************9876655554555555555445566679**************************999998888876..8**************9.68988665...78888888776665122213333333333333 PP

>> TIGR01661  ELAV_HUD_SF: ELAV/HuD family splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.7   0.0   9.9e-11   5.1e-08     212     342 ..      62     191 ..       5     201 .. 0.69
   2 !    6.6   0.0    0.0022       1.1     261     348 ..     211     294 ..     191     297 .. 0.76

  Alignments for each domain:
  == domain 1    score: 30.7 bits;  conditional E-value: 9.9e-11
   TIGR01661 212 aakfrlsaldflavlakrlqqhavaqqaaaqrasplaadgavaglaagaqiaasdgagycifvynlspdtdeavl.qlfgpfGavqsvkiirdlttnkckGygfvsmtnydeaalailslnGytlgnrvlqv 342
                  ++ r +  +  a l  + +   + ++++aq+ s  a++ +  +l + +q + +      +fv  l+  t ea l  lf   G v++v ++   +t + kG +fv+    ++ +la l lnG+ l ++ + v
  MMETSP1137-20121227|7109_1  62 KERKRKERRQREAALKAEAKATGLLPRQSAQEPSKRASKKKE-TLPNLEQAPFKRKGKNRVFVGHLAQSTSEASLcDLFQHCGQVVEVDMLYRTSTGRFKGSAFVAFKSAKN-VLAALKLNGTMLEGKQIVV 191
                 223333333444444334444445555666677777766655.77777777777777889**********999988******************************998766.556667******9997655 PP

  == domain 2    score: 6.6 bits;  conditional E-value: 0.0022
   TIGR01661 261 qiaasdgagycifvynlspdtdeavl.qlfgpfGavqsvkiirdlttnkckGygfvsmtnydeaalailslnGytlgnrvlqvsfktnk 348
                 ++aa   +   +fv n+ + +de  l   f + G +q vk++  +   k    +f+   + + a  a++    + l +  lqv +   k
  MMETSP1137-20121227|7109_1 211 TLAA--KSSRSVFVGNVPAGADERGLrNTFRECGPIQRVKLLPAV---KGIRPAFIDFREAKAAEDAVKLDGKFALNGNALQVGYSMRK 294
                 3444..345789***********999789************9888...33445898888888888888755557899999999877666 PP

>> TIGR01645  half-pint: poly-U binding splicing factor, half-pint family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   1.5      0.39     2e+02     423     473 ..      23      67 ..       3     110 .. 0.55
   2 !   35.6   0.0   1.9e-12   9.7e-10     108     284 ..     120     298 ..     116     306 .. 0.85

  Alignments for each domain:
  == domain 1    score: -1.7 bits;  conditional E-value: 0.39
   TIGR01645 423 ddtlalkepskeaasslalaaaakakeaaaalllenkkkkkekeeeelqpk 473
                 +++++ +  s ++ +   l+++   +e    +       +k ke++e ++k
  MMETSP1137-20121227|7109_1  23 VSAVCNASQSSDSLANRKLSSNGVPNESMEIQK------RKAKEKKERKRK 67 
                 444444444444444444444443333333333......333333332222 PP

  == domain 2    score: 35.6 bits;  conditional E-value: 1.9e-12
   TIGR01645 108 rv.vGsisfelkedtlrrafdPfGPiksinmsWdpvtqkhkgfafveevPeaallaleqmngallGGrnlkvg.....rPsnlpqaqpiidevqeeakkfnri.vasvhpdlseedlksvfeafGeivkcklaraptlrkhkGfGflefenlqsqseaiasmnlfdlGGqllrvGkavtPPdal 284
                 rv vG +     e  l   f+  G +  ++m + + t++ kg afv        la  ++ng++l G+ + v+      P+ ++  ++   ++   ak+   + v  v     e  l+  f   G+i++ kl   p+ ++ +   f++f ++++ ++a+     f l G  l+vG ++    +l
  MMETSP1137-20121227|7109_1 120 RVfVGHLAQSTSEASLCDLFQHCGQVVEVDMLYRTSTGRFKGSAFVAFKSAKNVLAALKLNGTMLEGKQIVVQpeqhsAPESVAPHKEKSPTL--AAKSSRSVfVGNVPAGADERGLRNTFRECGPIQRVKLL--PAVKGIRP-AFIDFREAKAAEDAVKLDGKFALNGNALQVGYSMRKAAPL 298
                 777999999999999********************************9999999****************99866655555554444443333..3455444559***********************99986..77888898.9******************************998777766 PP

>> TIGR01648  hnRNP-R-Q: hnRNP-R, Q splicing factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.0   6.9e-07   0.00035      18     117 ..      71     178 ..      54     192 .. 0.72
   2 !    8.7   0.0   0.00028      0.14      60     135 ..     219     291 ..     204     312 .. 0.86

  Alignments for each domain:
  == domain 1    score: 17.3 bits;  conditional E-value: 6.9e-07
   TIGR01648  18 pdeaalkalvertGy...tlvqenGqr..kyGGPPPgyegaq.PerG.cevfvGkiPrdlyedelvPlfekvGkiyelrlmmd.ldGknrGyafvtfcnkeeakeavk 117
                 + eaalka  + tG       qe  +r  k     P+ e a+   +G   vfvG + +   e  l  lf++ G++ e+ ++     G+ +G afv f   ++   a+k
  MMETSP1137-20121227|7109_1  71 QREAALKAEAKATGLlprQSAQEPSKRasKKKETLPNLEQAPfKRKGkNRVFVGHLAQSTSEASLCDLFQHCGQVVEVDMLYRtSTGRFKGSAFVAFKSAKNVLAALK 178
                 66777777777777522122334444433444455665555404455246******************************999688***********98877777776 PP

  == domain 2    score: 8.7 bits;  conditional E-value: 0.00028
   TIGR01648  60 evfvGkiPrdlyedelvPlfekvGkiyelrlmmdldGknrGyafvtfcnkeeakeavkelnnyeirpGrllGvcis 135
                  vfvG +P    e  l   f + G+i  ++l+  ++G     af+ f + ++a++avk   ++ + +G  l v  s
  MMETSP1137-20121227|7109_1 219 SVFVGNVPAGADERGLRNTFRECGPIQRVKLLPAVKGIR--PAFIDFREAKAAEDAVKLDGKFAL-NGNALQVGYS 291
                 69******************************9999975..59**************97666654.6777777666 PP

>> TIGR01659  sex-lethal: sex-lethal family splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.0   9.9e-06    0.0051     196     262 ..     121     186 ..     113     193 .. 0.75
   2 !    6.2   0.0     0.003       1.5     106     183 ..     216     290 ..     207     296 .. 0.80

  Alignments for each domain:
  == domain 1    score: 14.3 bits;  conditional E-value: 9.9e-06
   TIGR01659 196 lyvtnlprtitddqldtifgkygsivqknilrdkltgkprgvafvrfnkreeaqeaisalnnvipeg 262
                 ++v  l+++ ++  l  +f + g++v+ ++l    tg+ +g afv f   ++   a+  ln  + eg
  MMETSP1137-20121227|7109_1 121 VFVGHLAQSTSEASLCDLFQHCGQVVEVDMLYRTSTGRFKGSAFVAFKSAKNVLAAL-KLNGTMLEG 186
                 678888888888999999999999999999999999999999999987665554443.355555554 PP

  == domain 2    score: 6.2 bits;  conditional E-value: 0.003
   TIGR01659 106 sgtnlivnylpqdmtdrelyalfrtigpintcrimrdyktgysfgyafvdfaseadsqraikslngitvrnkrlkvsy 183
                 s+  + v  +p    +r l   fr  gpi+  +++   k       af+df     +  a+k     ++    l+v y
  MMETSP1137-20121227|7109_1 216 SSRSVFVGNVPAGADERGLRNTFRECGPIQRVKLLPAVKG---IRPAFIDFREAKAAEDAVKLDGKFALNGNALQVGY 290
                 55667888999***********************999885...56799999988888888885555555556666666 PP

>> TIGR01642  U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.2   6.4       1.8   9.3e+02      41      81 ..      54      97 ..      28     116 .. 0.55
   2 !   19.9   0.2   8.9e-08   4.5e-05     293     373 ..     115     194 ..      89     214 .. 0.86
   3 !    4.2   0.0    0.0053       2.7     172     255 ..     213     288 ..     197     298 .. 0.64
   4 ?   -5.3   3.7       3.9     2e+03      34      50 ..     301     317 ..     291     320 .. 0.50

  Alignments for each domain:
  == domain 1    score: -4.2 bits;  conditional E-value: 1.8
   TIGR01642 41 drrrsrrkdsRdRdrrrydsrsissleeds...rrrSRdrirrr 81
                ++r+++ k +R+R++rr+++   + + +      r+S +++ +r
  MMETSP1137-20121227|7109_1 54 QKRKAKEKKERKRKERRQREAALKAEAKATgllPRQSAQEPSKR 97
                34445555555555555555554444443333333333332222 PP

  == domain 2    score: 19.9 bits;  conditional E-value: 8.9e-08
   TIGR01642 293 ldsedklyignLPldlkddqvkeLLesFGdLkaFnliKdlatGlsKGyaFceykdssvtdlAiaaLnGiklgdkkLnvkrA 373
                   +++++++g L +   +  + +L +  G++   +++  + tG  KG aF+ +k +    lA   LnG  l +k++ v+  
  MMETSP1137-20121227|7109_1 115 RKGKNRVFVGHLAQSTSEASLCDLFQHCGQVVEVDMLYRTSTGRFKGSAFVAFKSAKN-VLAALKLNGTMLEGKQIVVQPE 194
                 5689*************************************************97665.577888**********999965 PP

  == domain 3    score: 4.2 bits;  conditional E-value: 0.0053
   TIGR01642 172 atrkaRrlyvgniPpeakeeavvdFfndlllavgkdkaedgkavkaviinkdkkFaflEfrtveeatlalaldsi.iyenvslki 255
                 a +  R ++vgn+P +a e  + + f +          ++ + vk     k  + af++fr  + a  a++ld+   +++ +l++
  MMETSP1137-20121227|7109_1 213 AAKSSRSVFVGNVPAGADERGLRNTFRE---------CGPIQRVKLLPAVKGIRPAFIDFREAKAAEDAVKLDGKfALNGNALQV 288
                 5677888888888888888776554433.........233445555555566666777777777777777777652344455555 PP

  == domain 4    score: -5.3 bits;  conditional E-value: 3.9
   TIGR01642  34 dRdRdrrdrrrsrrkds 50 
                  R+ d r+rrr +r+d 
  MMETSP1137-20121227|7109_1 301 RRSQDARKRRREKRDDA 317
                 23333333334444443 PP

>> TIGR01649  hnRNP-L_PTB: hnRNP-L/PTB/hephaestus splicing factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.7   0.1   0.00031      0.16     286     375 ..     107     198 ..      30     211 .. 0.64
   2 !    9.4   0.0    0.0002       0.1       2      79 ..     217     295 ..     216     315 .. 0.70

  Alignments for each domain:
  == domain 1    score: 8.7 bits;  conditional E-value: 0.00031
   TIGR01649 286 aisstapaasglgsVllvsnLeeekvtpdalFnlfgvYGdvervkilknk.....ketalvemadpqqaqlalthLdkvklfgkklrvavSkqea 375
                 ++++  ++ ++ ++ ++v  L ++     +l  lf   G+v  v +l+       k++a+v +   +++  al+ L+++ l gk++ v + +++a
  MMETSP1137-20121227|7109_1 107 NLEQAPFK-RKGKNRVFVGHLAQSTS-EASLCDLFQHCGQVVEVDMLYRTstgrfKGSAFVAFKSAKNVLAALK-LNGTMLEGKQIVVQPEQHSA 198
                 33333333.44445567777877654.45688888888888888888854333336788888888877776664.88888888888888877754 PP

  == domain 2    score: 9.4 bits;  conditional E-value: 0.0002
   TIGR01649   2 SkVvHvRnlpeevveadlvelliefGkvsyvlvlk...gkrqAlvEfedeesAkalVnfatsvpiqirGrtvfvqyStske 79 
                 S+ v v n+p    e  l +   e G++  v +l+   g r A+++f + ++A+++V+   + +  ++G+ + v yS  k 
  MMETSP1137-20121227|7109_1 217 SRSVFVGNVPAGADERGLRNTFRECGPIQRVKLLPavkGIRPAFIDFREAKAAEDAVKL--DGKFALNGNALQVGYSMRKA 295
                 66677777888888888888888888888777764211567788888888888888876..45566777777777777664 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (326 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       212  (0.0516821); expected 82.0 (0.02)
Passed bias filter:                      120  (0.029254); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         8  (0.00195027); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.51u 0.16s 00:00:00.67 Elapsed: 00:00:00.51
# Mc/sec: 843.70
//
Query:       MMETSP1137-20121227|7110_1  [L=162]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (162 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       109  (0.0265724); expected 82.0 (0.02)
Passed bias filter:                      103  (0.0251097); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.10s 00:00:00.27 Elapsed: 00:00:00.28
# Mc/sec: 763.65
//
Query:       MMETSP1137-20121227|7111_1  [L=178]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.5e-08   30.4   0.3    4.6e-08   30.0   0.2    1.1  1  TIGR02734 crtI_fam: phytoene desaturase
    4.6e-08   30.4   0.3    6.7e-08   29.9   0.2    1.1  1  TIGR00292 TIGR00292: thiazole biosynthesis enzyme
    8.9e-08   29.7   0.4    1.2e-07   29.2   0.3    1.1  1  TIGR03467 HpnE: squalene-associated FAD-dependent desaturase
    2.4e-07   26.4   0.1    2.9e-07   26.1   0.0    1.0  1  TIGR03315 Se_ygfK: putative selenate reductase, YgfK subunit
    5.1e-07   26.5   0.2    6.8e-07   26.1   0.2    1.1  1  TIGR02733 desat_CrtD: C-3',4' desaturase CrtD
    1.6e-06   24.6   0.1    2.1e-06   24.3   0.1    1.1  1  TIGR03997 mycofact_OYE_2: mycofactocin system FadH/OYE family oxidoreductase 2
    1.7e-06   25.0   0.1    2.4e-06   24.5   0.1    1.1  1  TIGR01317 GOGAT_sm_gam: glutamate synthase, NADH/NADPH, small subunit
    2.3e-06   24.5   1.9    2.9e-06   24.2   1.3    1.1  1  TIGR00275 TIGR00275: flavoprotein, HI0933 family
    3.1e-06   23.1   0.1    3.8e-06   22.8   0.1    1.0  1  TIGR01372 soxA: sarcosine oxidase, alpha subunit family
    8.6e-06   23.5   2.0    2.1e-05   22.2   1.1    1.7  2  TIGR02032 GG-red-SF: geranylgeranyl reductase family
    9.1e-06   22.5   0.1    1.1e-05   22.1   0.1    1.1  1  TIGR02731 phytoene_desat: phytoene desaturase
    9.6e-06   22.6   0.0    1.2e-05   22.3   0.0    1.1  1  TIGR04046 MSMEG_0569_nitr: flavin-dependent oxidoreductase, MSMEG_0569 family
    1.4e-05   21.9   0.0    1.7e-05   21.6   0.0    1.1  1  TIGR01316 gltA: glutamate synthase (NADPH), homotetrameric
    4.1e-05   20.6   0.2      5e-05   20.3   0.1    1.1  1  TIGR03197 MnmC_Cterm: tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain
    4.2e-05   20.1   0.1    5.5e-05   19.7   0.1    1.1  1  TIGR00562 proto_IX_ox: protoporphyrinogen oxidase
    4.9e-05   20.0   2.0    6.4e-05   19.6   1.4    1.1  1  TIGR01350 lipoamide_DH: dihydrolipoyl dehydrogenase
    0.00012   18.7   0.1    0.00016   18.2   0.1    1.1  1  TIGR01318 gltD_gamma_fam: glutamate synthase, small subunit
    0.00012   19.0   0.0    0.00016   18.6   0.0    1.1  1  TIGR00031 UDP-GALP_mutase: UDP-galactopyranose mutase
    0.00018   17.9   0.0    0.00023   17.6   0.0    1.1  1  TIGR03996 mycofact_OYE_1: mycofactocin system FadH/OYE family oxidoreductase 1
    0.00019   18.1   0.1    0.00034   17.3   0.1    1.3  1  TIGR01292 TRX_reduct: thioredoxin-disulfide reductase
    0.00022   17.9   2.4     0.0004   17.0   1.7    1.3  1  TIGR01813 flavo_cyto_c: flavocytochrome c
     0.0013   15.7   0.1     0.0016   15.3   0.0    1.1  1  TIGR02023 BchP-ChlP: geranylgeranyl reductase
     0.0014   15.6   1.5      0.002   15.1   1.0    1.2  1  TIGR02352 thiamin_ThiO: glycine oxidase ThiO
     0.0027   14.1   0.3     0.0036   13.8   0.2    1.1  1  TIGR01424 gluta_reduc_2: glutathione-disulfide reductase
     0.0033   14.1   0.0     0.0037   14.0   0.0    1.1  1  TIGR01988 Ubi-OHases: ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family
     0.0034   14.2   0.0     0.0039   14.1   0.0    1.1  1  TIGR03378 glycerol3P_GlpB: glycerol-3-phosphate dehydrogenase, anaerobic, B subunit
     0.0041   13.8   0.1     0.0054   13.4   0.0    1.1  1  TIGR02360 pbenz_hydroxyl: 4-hydroxybenzoate 3-monooxygenase
     0.0044   13.8   0.1     0.0054   13.5   0.1    1.1  1  TIGR02732 zeta_caro_desat: carotene 7,8-desaturase
     0.0044   13.7   0.0      0.005   13.5   0.0    1.1  1  TIGR04018 Bthiol_YpdA: putative bacillithiol system oxidoreductase, YpdA family
     0.0063   13.6   1.0     0.0087   13.2   0.7    1.2  1  TIGR00745 apbA_panE: 2-dehydropantoate 2-reductase
     0.0077   13.2   1.5       0.01   12.8   1.0    1.1  1  TIGR03364 HpnW_proposed: FAD dependent oxidoreductase TIGR03364
     0.0087   12.5   0.2       0.01   12.2   0.1    1.0  1  TIGR03143 AhpF_homolog: putative alkyl hydroperoxide reductase F subunit
     0.0094   12.5   0.2      0.012   12.2   0.1    1.1  1  TIGR03026 NDP-sugDHase: nucleotide sugar dehydrogenase
  ------ inclusion threshold ------
      0.012   12.2   0.0      0.016   11.8   0.0    1.1  1  TIGR03385 CoA_CoA_reduc: CoA-disulfide reductase
      0.013   11.9   0.0      0.015   11.6   0.0    1.1  1  TIGR03140 AhpF: alkyl hydroperoxide reductase, F subunit
      0.016   12.0   0.1      0.021   11.6   0.1    1.1  1  TIGR02053 MerA: mercuric reductase
      0.016   12.2   0.1      0.021   11.8   0.0    1.1  1  TIGR01790 carotene-cycl: lycopene cyclase family protein
      0.018   11.3   0.0      0.022   10.9   0.0    1.0  1  TIGR02374 nitri_red_nirB: nitrite reductase [NAD(P)H], large subunit
      0.019   11.6   0.0      0.023   11.3   0.0    1.1  1  TIGR01984 UbiH: 2-polyprenyl-6-methoxyphenol 4-hydroxylase
      0.019   11.6   0.1      0.025   11.2   0.0    1.1  1  TIGR02485 CobZ_N-term: precorrin 3B synthase CobZ
      0.021   11.4   0.1      0.026   11.1   0.0    1.1  1  TIGR01377 soxA_mon: sarcosine oxidase, monomeric form
      0.023   11.6   0.1      0.027   11.3   0.0    1.1  1  TIGR01087 murD: UDP-N-acetylmuramoylalanine--D-glutamate ligase
      0.028   11.1   0.1      0.034   10.8   0.1    1.1  1  TIGR02730 carot_isom: carotene isomerase
      0.032   10.8   0.4      0.041   10.4   0.3    1.1  1  TIGR00551 nadB: L-aspartate oxidase
      0.056   10.2   0.1      0.082    9.6   0.1    1.1  1  TIGR01035 hemA: glutamyl-tRNA reductase


Domain annotation for each model (and alignments):
>> TIGR02734  crtI_fam: phytoene desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.0   0.2   5.1e-10   4.6e-08       1      35 [.      33      67 ..      33      75 .. 0.94

  Alignments for each domain:
  == domain 1    score: 30.0 bits;  conditional E-value: 5.1e-10
   TIGR02734  1 avViGaGlgGLAlAirLaaaGievtvlekrdkpGG 35
                ++ViGaG++GL +A  L+ aG++vt++e+ +++GG
  MMETSP1137-20121227|7111_1 33 VCVIGAGASGLVAAKYLKEAGYKVTIVEQAQAIGG 67
                68********************************9 PP

>> TIGR00292  TIGR00292: thiazole biosynthesis enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.9   0.2   7.3e-10   6.7e-08      22      58 ..      31      67 ..      23      71 .. 0.92

  Alignments for each domain:
  == domain 1    score: 29.9 bits;  conditional E-value: 7.3e-10
   TIGR00292 22 sDviivGaGpsGLtaayylakeglkvvvlerklaiGG 58
                  v ++GaG+sGL aa+yl ++g+kv ++e+  aiGG
  MMETSP1137-20121227|7111_1 31 RSVCVIGAGASGLVAAKYLKEAGYKVTIVEQAQAIGG 67
                5699********************************9 PP

>> TIGR03467  HpnE: squalene-associated FAD-dependent desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.2   0.3   1.3e-09   1.2e-07       1      42 [.      33      74 ..      33      81 .. 0.89

  Alignments for each domain:
  == domain 1    score: 29.2 bits;  conditional E-value: 1.3e-09
   TIGR03467  1 vvvvGgGlAGLaAAveLaraGvrvtllEarrqlGGRarsfed 42
                v v+G+G +GL AA  L +aG++vt++E ++++GG   s + 
  MMETSP1137-20121227|7111_1 33 VCVIGAGASGLVAAKYLKEAGYKVTIVEQAQAIGGVFDSRTY 74
                78*********************************8777654 PP

>> TIGR03315  Se_ygfK: putative selenate reductase, YgfK subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.1   0.0   3.2e-09   2.9e-07     534     577 ..      27      70 ..       7      82 .. 0.90

  Alignments for each domain:
  == domain 1    score: 26.1 bits;  conditional E-value: 3.2e-09
   TIGR03315 534 ksekhkvaviGaGPaGlsagyflaraGlpvtvfekkekagGvvk 577
                  ++ + v viGaG +Gl a+ +l+ aG +vt++e+ + +gGv +
  MMETSP1137-20121227|7111_1  27 AEDVRSVCVIGAGASGLVAAKYLKEAGYKVTIVEQAQAIGGVFD 70 
                 566779***********************************975 PP

>> TIGR02733  desat_CrtD: C-3',4' desaturase CrtD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.1   0.2   7.4e-09   6.8e-07       3      39 ..      32      68 ..      30      76 .. 0.93

  Alignments for each domain:
  == domain 1    score: 26.1 bits;  conditional E-value: 7.4e-09
   TIGR02733  3 svvviGaGiaGltaaallakrGlevtlleaaaqvGGC 39
                sv viGaG +Gl aa  l + G++vt++e+a+ +GG 
  MMETSP1137-20121227|7111_1 32 SVCVIGAGASGLVAAKYLKEAGYKVTIVEQAQAIGGV 68
                89*********************************96 PP

>> TIGR03997  mycofact_OYE_2: mycofactocin system FadH/OYE family oxidoreductase 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.3   0.1   2.3e-08   2.1e-06     375     417 ..      26      68 ..      17      78 .. 0.88

  Alignments for each domain:
  == domain 1    score: 24.3 bits;  conditional E-value: 2.3e-08
   TIGR03997 375 karrrkkvlvvGgGPaGleaaataarrGhrvtllereeelGGq 417
                 +a+  + v+v+G+G +Gl aa+   + G++vt++e+++++GG 
  MMETSP1137-20121227|7111_1  26 PAEDVRSVCVIGAGASGLVAAKYLKEAGYKVTIVEQAQAIGGV 68 
                 455669***********************************96 PP

>> TIGR01317  GOGAT_sm_gam: glutamate synthase, NADH/NADPH, small subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.5   0.1   2.6e-08   2.4e-06     144     182 ..      31      69 ..      24      74 .. 0.93

  Alignments for each domain:
  == domain 1    score: 24.5 bits;  conditional E-value: 2.6e-08
   TIGR01317 144 kkvavvGsGPaGlaaadqlnraGhtvtvferedrvGGll 182
                 + v+v+G+G +Gl aa+ l++aG++vt+ e++  +GG++
  MMETSP1137-20121227|7111_1  31 RSVCVIGAGASGLVAAKYLKEAGYKVTIVEQAQAIGGVF 69 
                 579**********************************85 PP

>> TIGR00275  TIGR00275: flavoprotein, HI0933 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.2   1.3   3.1e-08   2.9e-06       1      34 [.      33      66 ..      33      69 .. 0.95

  Alignments for each domain:
  == domain 1    score: 24.2 bits;  conditional E-value: 3.1e-08
   TIGR00275  1 viiiGgGaaGlmaAitaaeegakVlllEknkkig 34
                v +iG+Ga+Gl+aA  ++e+g kV+++E+++ ig
  MMETSP1137-20121227|7111_1 33 VCVIGAGASGLVAAKYLKEAGYKVTIVEQAQAIG 66
                67****************************9998 PP

>> TIGR01372  soxA: sarcosine oxidase, alpha subunit family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.8   0.1   4.2e-08   3.8e-06     171     210 ..      33      72 ..      27      92 .. 0.92

  Alignments for each domain:
  == domain 1    score: 22.8 bits;  conditional E-value: 4.2e-08
   TIGR01372 171 vLvvGaGpaGLaaAraAaraGarvilvdeqaeaGGsllse 210
                 v v+GaG++GL aA+   +aG +v++v++ +++GG   s+
  MMETSP1137-20121227|7111_1  33 VCVIGAGASGLVAAKYLKEAGYKVTIVEQAQAIGGVFDSR 72 
                 88*********************************88766 PP

>> TIGR02032  GG-red-SF: geranylgeranyl reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.2   1.1   2.3e-07   2.1e-05       3      36 ..      33      66 ..      32      69 .. 0.94
   2 ?   -1.2   0.0         3   2.7e+02     194     206 ..     133     145 ..     101     160 .. 0.51

  Alignments for each domain:
  == domain 1    score: 22.2 bits;  conditional E-value: 2.3e-07
   TIGR02032  3 vvvvGaGpaGssaAlrlakkGlrVlllekkelpr 36
                v v+GaG +G  aA +l+++G++V ++e++++++
  MMETSP1137-20121227|7111_1 33 VCVIGAGASGLVAAKYLKEAGYKVTIVEQAQAIG 66
                78***************************99876 PP

  == domain 2    score: -1.2 bits;  conditional E-value: 3
   TIGR02032 194 vpggYgWvfPkgd 206
                 + ++ gW +P+g 
  MMETSP1137-20121227|7111_1 133 SRAALGWWVPRGG 145
                 2333344444444 PP

>> TIGR02731  phytoene_desat: phytoene desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.1   0.1   1.2e-07   1.1e-05       2      45 ..      33      76 ..      32      90 .. 0.85

  Alignments for each domain:
  == domain 1    score: 22.1 bits;  conditional E-value: 1.2e-07
   TIGR02731  2 vaiagaglaglsaakyladaghtpivleardvlggkvaawkded 45
                v++ gag +gl aakyl +ag++  ++e+++ +gg   +   +d
  MMETSP1137-20121227|7111_1 33 VCVIGAGASGLVAAKYLKEAGYKVTIVEQAQAIGGVFDSRTYDD 76
                7899*******************************887665555 PP

>> TIGR04046  MSMEG_0569_nitr: flavin-dependent oxidoreductase, MSMEG_0569 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.3   0.0   1.3e-07   1.2e-05       2      89 ..      32     123 ..      31     135 .. 0.87

  Alignments for each domain:
  == domain 1    score: 22.3 bits;  conditional E-value: 1.3e-07
   TIGR04046   2 pvviiGaGqaGlsvsyllkkkgvdhvvlekkt.vahswkderwdsfclvtPnwqcrlPgypy...dGedPdGfmkkdeivayleeyaesvda 89 
                 +v +iGaG +Gl  + +lk++g +  ++e+ + ++  ++++ +d   lv+  +  ++ +      d + P+  ++  e v+yl+ey ++++ 
  MMETSP1137-20121227|7111_1  32 SVCVIGAGASGLVAAKYLKEAGYKVTIVEQAQaIGGVFDSRTYDDARLVSSTYLTAFSDLRMgpdDKPHPKPHVSAVEYVEYLREYCRRFEL 123
                 699**************************9884677888888************9999988733355569999**************99875 PP

>> TIGR01316  gltA: glutamate synthase (NADPH), homotetrameric
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.6   0.0   1.8e-07   1.7e-05     134     173 ..      31      70 ..      16      93 .. 0.84

  Alignments for each domain:
  == domain 1    score: 21.6 bits;  conditional E-value: 1.8e-07
   TIGR01316 134 kkvaviGaGpaGlavaselakkGhevtvfealhkpGGvla 173
                   v viGaG +Gl  a+ l  +G++vt+ e  +  GGv+ 
  MMETSP1137-20121227|7111_1  31 RSVCVIGAGASGLVAAKYLKEAGYKVTIVEQAQAIGGVFD 70 
                 4699*********************************985 PP

>> TIGR03197  MnmC_Cterm: tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   0.1   5.5e-07     5e-05       2      35 ..      33      66 ..      32      88 .. 0.95

  Alignments for each domain:
  == domain 1    score: 20.3 bits;  conditional E-value: 5.5e-07
   TIGR03197  2 vavIGaGiAgaalalsLarrGvqvtllekdekla 35
                v vIGaG +g+++a+ L+++G +vt++e++++++
  MMETSP1137-20121227|7111_1 33 VCVIGAGASGLVAAKYLKEAGYKVTIVEQAQAIG 66
                89***************************98876 PP

>> TIGR00562  proto_IX_ox: protoporphyrinogen oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.1     6e-07   5.5e-05       3      46 ..      31      72 ..      29      79 .. 0.89

  Alignments for each domain:
  == domain 1    score: 19.7 bits;  conditional E-value: 6e-07
   TIGR00562  3 kkvvvvGgGisGLciayalekerpdvelvlvEakdRvGGkiyTr 46
                + v v+G+G sGL +a +l+    +  +++vE+ + +GG    r
  MMETSP1137-20121227|7111_1 31 RSVCVIGAGASGLVAAKYLKEA--GYKVTIVEQAQAIGGVFDSR 72
                789****************999..9**************87644 PP

>> TIGR01350  lipoamide_DH: dihydrolipoyl dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   1.4     7e-07   6.4e-05       4      38 ..      33      68 ..      30      71 .. 0.93

  Alignments for each domain:
  == domain 1    score: 19.6 bits;  conditional E-value: 7e-07
   TIGR01350  4 vvviGgGpgGYvaAiraaqlglkvalvek.eklGGt 38
                v+viG+G +G vaA    ++g kv++ve+ + +GG+
  MMETSP1137-20121227|7111_1 33 VCVIGAGASGLVAAKYLKEAGYKVTIVEQaQAIGGV 68
                89***************************8899997 PP

>> TIGR01318  gltD_gamma_fam: glutamate synthase, small subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.1   1.8e-06   0.00016     142     180 ..      31      69 ..      23      74 .. 0.92

  Alignments for each domain:
  == domain 1    score: 18.2 bits;  conditional E-value: 1.8e-06
   TIGR01318 142 krvaviGaGpaGlacadvlaraGvkvvvfdrypeiGGll 180
                 + v viGaG +Gl  a  l+ aG kv++ ++ ++iGG++
  MMETSP1137-20121227|7111_1  31 RSVCVIGAGASGLVAAKYLKEAGYKVTIVEQAQAIGGVF 69 
                 5799*********************************86 PP

>> TIGR00031  UDP-GALP_mutase: UDP-galactopyranose mutase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.0   1.7e-06   0.00016       5      40 ..      34      69 ..      31      84 .. 0.85

  Alignments for each domain:
  == domain 1    score: 18.6 bits;  conditional E-value: 1.7e-06
   TIGR00031  5 iivGaGlsGivlaeilaklnkrvlvvekrnhiGGnc 40
                 ++GaG sG v a+ l++ + +v +ve+ + iGG  
  MMETSP1137-20121227|7111_1 34 CVIGAGASGLVAAKYLKEAGYKVTIVEQAQAIGGVF 69
                69*******************************964 PP

>> TIGR03996  mycofact_OYE_1: mycofactocin system FadH/OYE family oxidoreductase 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.0   2.5e-06   0.00023     372     413 ..      30      71 ..      13      89 .. 0.85

  Alignments for each domain:
  == domain 1    score: 17.6 bits;  conditional E-value: 2.5e-06
   TIGR03996 372 pgdvlvvGGGpaGleaarvlavrGhrvtlaeasarlGGmvri 413
                   +v v+G G +Gl aa+ l  +G++vt++e++  +GG+   
  MMETSP1137-20121227|7111_1  30 VRSVCVIGAGASGLVAAKYLKEAGYKVTIVEQAQAIGGVFDS 71 
                 45799*********************************9754 PP

>> TIGR01292  TRX_reduct: thioredoxin-disulfide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.1   3.8e-06   0.00034       3      38 ..      33      68 ..      31      76 .. 0.87

  Alignments for each domain:
  == domain 1    score: 17.3 bits;  conditional E-value: 3.8e-06
   TIGR01292  3 viiiGaGpaGltaaiYaaranlktlliegkeaggql 38
                v +iGaG++Gl aa Y + a++k+ ++e+++a g +
  MMETSP1137-20121227|7111_1 33 VCVIGAGASGLVAAKYLKEAGYKVTIVEQAQAIGGV 68
                889*************************99988766 PP

>> TIGR01813  flavo_cyto_c: flavocytochrome c
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   1.7   4.4e-06    0.0004       2      37 ..      33      67 ..      32      70 .. 0.96

  Alignments for each domain:
  == domain 1    score: 17.0 bits;  conditional E-value: 4.4e-06
   TIGR01813  2 vvvvGsGlAGlsaaleakkaglaevvvleKapviGG 37
                v v+G+G+ Gl aa  +k+ag  +v ++e a++iGG
  MMETSP1137-20121227|7111_1 33 VCVIGAGASGLVAAKYLKEAG-YKVTIVEQAQAIGG 67
                89*******************.9************9 PP

>> TIGR02023  BchP-ChlP: geranylgeranyl reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   1.8e-05    0.0016       2      32 ..      32      62 ..      31      84 .. 0.90

  Alignments for each domain:
  == domain 1    score: 15.3 bits;  conditional E-value: 1.8e-05
   TIGR02023  2 dvlviGggpsGaaaaetLakagievillere 32
                 v viG+g+sG  aa+ L++ag++v ++e++
  MMETSP1137-20121227|7111_1 32 SVCVIGAGASGLVAAKYLKEAGYKVTIVEQA 62
                599**************************98 PP

>> TIGR02352  thiamin_ThiO: glycine oxidase ThiO
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   1.0   2.2e-05     0.002       1      31 [.      33      63 ..      33      68 .. 0.91

  Alignments for each domain:
  == domain 1    score: 15.1 bits;  conditional E-value: 2.2e-05
   TIGR02352  1 vlviGgGviGlsvAveLakrghkvtllekde 31
                v viG+G  Gl+ A +L+++g kvt++e+++
  MMETSP1137-20121227|7111_1 33 VCVIGAGASGLVAAKYLKEAGYKVTIVEQAQ 63
                68**************************996 PP

>> TIGR01424  gluta_reduc_2: glutathione-disulfide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.2   3.9e-05    0.0036       6      38 ..      34      67 ..      31      83 .. 0.89

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 3.9e-05
   TIGR01424  6 fviGaGsGGvraarlaaalGakvaiaeedl.vGG 38
                 viGaG+ G+ aa++  + G kv+i+e+ + +GG
  MMETSP1137-20121227|7111_1 34 CVIGAGASGLVAAKYLKEAGYKVTIVEQAQaIGG 67
                69*************************9763666 PP

>> TIGR01988  Ubi-OHases: ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.0   4.1e-05    0.0037       2      50 ..      33      83 ..      32     118 .. 0.84

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 4.1e-05
   TIGR01988  2 ivIvGgGlvGlalAlaLassadlkvalveakaaek...akspafdnRvsAls 50
                + ++G+G  Gl+ A  L++ +  kv++ve+++a      ++++ d+R ++ +
  MMETSP1137-20121227|7111_1 33 VCVIGAGASGLVAAKYLKEAG-YKVTIVEQAQAIGgvfDSRTYDDARLVSST 83
                789***************766.********9776677656667777777655 PP

>> TIGR03378  glycerol3P_GlpB: glycerol-3-phosphate dehydrogenase, anaerobic, B subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.0   4.3e-05    0.0039       3      34 ..      33      64 ..      32     111 .. 0.93

  Alignments for each domain:
  == domain 1    score: 14.1 bits;  conditional E-value: 4.3e-05
   TIGR03378  3 viiiGgGlaGlscalrlaeaGkktaiiaaGqs 34
                v +iG+G +Gl +a  l+eaG k+ i+ + q+
  MMETSP1137-20121227|7111_1 33 VCVIGAGASGLVAAKYLKEAGYKVTIVEQAQA 64
                689**************************997 PP

>> TIGR02360  pbenz_hydroxyl: 4-hydroxybenzoate 3-monooxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.0     6e-05    0.0054       4      35 ..      32      63 ..      30      73 .. 0.93

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 6e-05
   TIGR02360  4 qvaiigaGpsGlllgqllhkaGidavilerks 35
                 v++igaG sGl+ ++ l++aG ++ i+e+ +
  MMETSP1137-20121227|7111_1 32 SVCVIGAGASGLVAAKYLKEAGYKVTIVEQAQ 63
                59***************************975 PP

>> TIGR02732  zeta_caro_desat: carotene 7,8-desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   0.1     6e-05    0.0054       2      42 ..      33      73 ..      32      88 .. 0.89

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 6e-05
   TIGR02732  2 vaivgaglaglatavelvdaghevelyesrsflggkvgswv 42
                v ++gag +gl +a  l +ag++v + e  + +gg   s +
  MMETSP1137-20121227|7111_1 33 VCVIGAGASGLVAAKYLKEAGYKVTIVEQAQAIGGVFDSRT 73
                789********************************887754 PP

>> TIGR04018  Bthiol_YpdA: putative bacillithiol system oxidoreductase, YpdA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   0.0   5.5e-05     0.005       2      39 ..      33      70 ..      32     125 .. 0.76

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 5.5e-05
   TIGR04018  2 viiiGaGPiGlaaaieakkaglsyliiekgalvnsiyk 39
                v++iGaG  Gl aa  +k+ag++++i+e+ + +  ++ 
  MMETSP1137-20121227|7111_1 33 VCVIGAGASGLVAAKYLKEAGYKVTIVEQAQAIGGVFD 70
                79**************************9988777765 PP

>> TIGR00745  apbA_panE: 2-dehydropantoate 2-reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   0.7   9.5e-05    0.0087       2      30 ..      33      61 ..      32      67 .. 0.90

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 9.5e-05
   TIGR00745  2 iailGaGAvGsllgakLaragadVtllar 30
                ++++GaGA G + + +L++ag++Vt++ +
  MMETSP1137-20121227|7111_1 33 VCVIGAGASGLVAAKYLKEAGYKVTIVEQ 61
                89***********************9865 PP

>> TIGR03364  HpnW_proposed: FAD dependent oxidoreductase TIGR03364
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.8   1.0   0.00011      0.01       2      35 ..      32      65 ..      31      68 .. 0.91

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 0.00011
   TIGR03364  2 dvvvvGaGivGlahAlaaarrGlkVtvierssra 35
                +v v+GaG  Gl  A   ++ G kVt++e++++ 
  MMETSP1137-20121227|7111_1 32 SVCVIGAGASGLVAAKYLKEAGYKVTIVEQAQAI 65
                689**************************99865 PP

>> TIGR03143  AhpF_homolog: putative alkyl hydroperoxide reductase F subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.2   0.1   0.00011      0.01       3      41 ..      29      67 ..      27      80 .. 0.85

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 0.00011
   TIGR03143  3 elydlvviGgGpaglsaGiyagraklkvliiekdelGGq 41
                ++  + viG+G++gl a  y+  a +kv i+e+ ++ G 
  MMETSP1137-20121227|7111_1 29 DVRSVCVIGAGASGLVAAKYLKEAGYKVTIVEQAQAIGG 67
                566789**************************9876444 PP

>> TIGR03026  NDP-sugDHase: nucleotide sugar dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.2   0.1   0.00013     0.012       2      33 ..      32      63 ..      31      65 .. 0.92

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 0.00013
   TIGR03026  2 kiavvGlGYvGlplaallaekgheVvgvDidk 33
                 ++v+G+G  Gl+ a  l e+g++V+ v+  +
  MMETSP1137-20121227|7111_1 32 SVCVIGAGASGLVAAKYLKEAGYKVTIVEQAQ 63
                69**************************9765 PP

>> TIGR03385  CoA_CoA_reduc: CoA-disulfide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   0.00018     0.016     144     190 ..      25      70 ..      19      77 .. 0.89

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 0.00018
   TIGR03385 144 ldkkkvekvvviGgGyiglemvealkergkevtliersekilnkllD 190
                 l +++v++v viG+G  gl  +  lke g +vt++e+++ i   ++D
  MMETSP1137-20121227|7111_1  25 LPAEDVRSVCVIGAGASGLVAAKYLKEAGYKVTIVEQAQAI-GGVFD 70 
                 567899********************************999.66666 PP

>> TIGR03140  AhpF: alkyl hydroperoxide reductase, F subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   0.00017     0.015     211     249 ..      29      69 ..      11      91 .. 0.75

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 0.00017
   TIGR03140 211 ekydvlvvGgGPagaaaaiyaarkGlkvalv..aeriGGqv 249
                 +   v v+G+G +g  aa y    G kv++v  a+ iGG  
  MMETSP1137-20121227|7111_1  29 DVRSVCVIGAGASGLVAAKYLKEAGYKVTIVeqAQAIGGVF 69 
                 55678999999999999999999999999995566788854 PP

>> TIGR02053  MerA: mercuric reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.1   0.00023     0.021     168     201 ..      31      64 ..      21      71 .. 0.74

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 0.00023
   TIGR02053 168 eslvviGggaiavElaqlfarlGsevtllqrser 201
                 +s+ viG+ga ++ +a+ ++  G +vt+++++++
  MMETSP1137-20121227|7111_1  31 RSVCVIGAGASGLVAAKYLKEAGYKVTIVEQAQA 64 
                 5677777777777777777777777777777754 PP

>> TIGR01790  carotene-cycl: lycopene cyclase family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   0.00023     0.021       2      36 ..      33      67 ..      32      76 .. 0.90

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 0.00023
   TIGR01790  2 liviGgGlAglaiAlelakpglrvqlieaapklpf 36
                + viG+G +gl+ A  l+++g +v ++e a+ +++
  MMETSP1137-20121227|7111_1 33 VCVIGAGASGLVAAKYLKEAGYKVTIVEQAQAIGG 67
                68**************************8887765 PP

>> TIGR02374  nitri_red_nirB: nitrite reductase [NAD(P)H], large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00025     0.022     137     174 ..      27      64 ..      13      69 .. 0.87

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 0.00025
   TIGR02374 137 akrtkkaaviGgGLLGLeaaraLknlGldvsvielapl 174
                 a+ ++   viG+G  GL aa+ Lk+ G +v ++e a  
  MMETSP1137-20121227|7111_1  27 AEDVRSVCVIGAGASGLVAAKYLKEAGYKVTIVEQAQA 64 
                 45667789*************************99865 PP

>> TIGR01984  UbiH: 2-polyprenyl-6-methoxyphenol 4-hydroxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   0.00025     0.023       2      45 ..      33      73 ..      32      89 .. 0.85

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 0.00025
   TIGR01984  2 viivGgglvGlslAlaLsrksklkialieaksaeaakssfdars 45
                v ++G+g +Gl+ A  L++ +  k++++e+ +a     +fd r+
  MMETSP1137-20121227|7111_1 33 VCVIGAGASGLVAAKYLKEAG-YKVTIVEQAQAIGG--VFDSRT 73
                789******************.*******9877555..666665 PP

>> TIGR02485  CobZ_N-term: precorrin 3B synthase CobZ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   0.00027     0.025       3      34 ..      32      63 ..      30      90 .. 0.85

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 0.00027
   TIGR02485  3 dvlviGgGlaglCaaiearraGasvllleaaP 34
                 v viG+G +gl aa   ++aG  v ++e a 
  MMETSP1137-20121227|7111_1 32 SVCVIGAGASGLVAAKYLKEAGYKVTIVEQAQ 63
                689*************************9985 PP

>> TIGR01377  soxA_mon: sarcosine oxidase, monomeric form
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00029     0.026       3      35 ..      33      65 ..      31      93 .. 0.77

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 0.00029
   TIGR01377  3 vivvGaGvmGsaaayqLakrgkkvLLleqfdlp 35
                v v+GaG  G +aa +L   g kv ++eq +  
  MMETSP1137-20121227|7111_1 33 VCVIGAGASGLVAAKYLKEAGYKVTIVEQAQAI 65
                78**************************97765 PP

>> TIGR01087  murD: UDP-N-acetylmuramoylalanine--D-glutamate ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0    0.0003     0.027       2      33 ..      33      64 ..      32      82 .. 0.93

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 0.0003
   TIGR01087  2 vlilGlgktGravaefLaekgaevtvtdlkke 33
                v+++G g +G  +a++L+e+g +vt++ ++++
  MMETSP1137-20121227|7111_1 33 VCVIGAGASGLVAAKYLKEAGYKVTIVEQAQA 64
                89************************998875 PP

>> TIGR02730  carot_isom: carotene isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.1   0.00037     0.034       3      37 ..      33      67 ..      31      90 .. 0.85

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 0.00037
   TIGR02730  3 aivigsgigglvtatqlaakgakvlvlekylipgg 37
                + vig+g  glv+a  l   g kv ++e+    gg
  MMETSP1137-20121227|7111_1 33 VCVIGAGASGLVAAKYLKEAGYKVTIVEQAQAIGG 67
                679*************************9876665 PP

>> TIGR00551  nadB: L-aspartate oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.3   0.00045     0.041       4      34 ..      32      63 ..      29      70 .. 0.87

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 0.00045
   TIGR00551  4 dvvviGsGaagLsaalalaekyr.vvvlskae 34
                 v viG+Ga gL aa  l+e++  v+++ +a+
  MMETSP1137-20121227|7111_1 32 SVCVIGAGASGLVAAKYLKEAGYkVTIVEQAQ 63
                699***************998766***99886 PP

>> TIGR01035  hemA: glutamyl-tRNA reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.1    0.0009     0.082     182     213 ..      32      62 ..      27      67 .. 0.89

  Alignments for each domain:
  == domain 1    score: 9.6 bits;  conditional E-value: 0.0009
   TIGR01035 182 kvlliGaGemaeLvakhLkekgvkkvlilnRt 213
                  v +iGaG+ +  +ak+Lke+g  kv+i+   
  MMETSP1137-20121227|7111_1  32 SVCVIGAGASGLVAAKYLKEAG-YKVTIVEQA 62 
                 688*******************.999999765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (178 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       198  (0.0482691); expected 82.0 (0.02)
Passed bias filter:                      194  (0.047294); expected 82.0 (0.02)
Passed Vit filter:                        88  (0.0214529); expected 4.1 (0.001)
Passed Fwd filter:                        45  (0.0109703); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              45  [number of targets reported over threshold]
# CPU time: 0.35u 0.15s 00:00:00.50 Elapsed: 00:00:00.50
# Mc/sec: 469.88
//
Query:       MMETSP1137-20121227|7112_1  [L=202]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (202 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        87  (0.0212092); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.14s 00:00:00.34 Elapsed: 00:00:00.34
# Mc/sec: 784.17
//
Query:       MMETSP1137-20121227|7113_1  [L=245]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.7e-41  138.6   0.0    5.1e-41  138.2   0.0    1.1  1  TIGR03164 UHCUDC: OHCU decarboxylase
    9.4e-36  120.5   0.0    1.4e-35  120.0   0.0    1.2  1  TIGR02962 hdxy_isourate: hydroxyisourate hydrolase
    2.5e-11   41.8   0.0    7.7e-11   40.1   0.0    1.7  2  TIGR03180 UraD_2: OHCU decarboxylase


Domain annotation for each model (and alignments):
>> TIGR03164  UHCUDC: OHCU decarboxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  138.2   0.0   3.7e-44   5.1e-41      19     135 ..       2     118 ..       1     124 [. 0.98

  Alignments for each domain:
  == domain 1    score: 138.2 bits;  conditional E-value: 3.7e-44
   TIGR03164  19 wvaeraaaqrpfdsiedlhaalveaveaaekeeqlaliraHPdLagklavageltaeStsEqasAGldklseeEferftrlNeaykerfgfPfilavkgktkesilaaleaRlendk 135
                 wva r++++ pf+s+++l +a+ e+v +a++eeqlal+ aHPdLagk+a agelt eStsEqa+AGl+ l++eE+e ft lN++y+e+fgfPfilav+++ k+ ilaa+  Rl +++
  MMETSP1137-20121227|7113_1   2 WVASRTFDKGPFSSLSALATAMRETVDSATEEEQLALLCAHPDLAGKAALAGELTPESTSEQARAGLSSLTAEELEGFTALNSKYREKFGFPFILAVRNARKSTILAAFPPRLAKTR 118
                 *****************************************************************************************************************9876 PP

>> TIGR02962  hdxy_isourate: hydroxyisourate hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  120.0   0.0     1e-38   1.4e-35       2     113 .]     125     245 .]     124     245 .] 0.93

  Alignments for each domain:
  == domain 1    score: 120.0 bits;  conditional E-value: 1e-38
   TIGR02962   2 sklttHvldtasGkpaagvkveleklee.....eeskklaeavtnadGrvkelllekeklkaGeyklkfevgeyfkakkv....esfypevevkfevkeeeehyHvPlllspygystYrGs 113
                  klt+Hvldta+G paag+++ l k+       e +k + + vtn+dGr++ + l++e++++G+y+ +f+vg+yf+a +v    + f+  v+++f ++++e+hyHvPll sp++ystYrGs
  MMETSP1137-20121227|7113_1 125 GKLTCHVLDTARGIPAAGMTIVLRKRVVqesgeEAWKVVGNFVTNSDGRLNGPALQGEAFTEGVYEWTFSVGDYFAAAGVptpgTPFLSDVPLRFGIDNPEQHYHVPLLCSPWSYSTYRGS 245
                 589******************99876433345355********************************************9999999**********************************9 PP

>> TIGR03180  UraD_2: OHCU decarboxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.1   0.0   5.6e-14   7.7e-11      25     134 ..       6     117 ..       1     124 [. 0.84
   2 ?   -1.2   0.0      0.29     4e+02     114     142 ..     134     162 ..     130     170 .. 0.83

  Alignments for each domain:
  == domain 1    score: 40.1 bits;  conditional E-value: 5.6e-14
   TIGR03180  25 klvaaRPfasaeallkaaeealaelseedleeAlaaHPriGekkakqaaeaatkrrEq..agvdeadeevkaalaegNaaYeekFGfiflvrAaGrsaeelldllqaRlend 134
                 +  ++ Pf+s +al +a +e++++ +ee+  + l aHP +  k a +   + ++ +Eq  ag+ + ++e  + ++++N++Y ekFGf f++         +l++   Rl ++
  MMETSP1137-20121227|7113_1   6 RTFDKGPFSSLSALATAMRETVDSATEEEQLALLCAHPDLAGKAALAGELTPESTSEQarAGLSSLTAEELEGFTALNSKYREKFGFPFILAVRNARKSTILAAFPPRLAKT 117
                 567889*********************************988887665555555555522799**************************99888888888999999888876 PP

  == domain 2    score: -1.2 bits;  conditional E-value: 0.29
   TIGR03180 114 rAaGrsaeelldllqaRlendpeeEkeiv 142
                  A G  a  +  +l++R+ ++  eE   v
  MMETSP1137-20121227|7113_1 134 TARGIPAAGMTIVLRKRVVQESGEEAWKV 162
                 588889999999*****999999887666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (245 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        64  (0.0156021); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.21u 0.13s 00:00:00.34 Elapsed: 00:00:00.35
# Mc/sec: 923.92
//
Query:       MMETSP1137-20121227|7114_1  [L=290]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (290 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        67  (0.0163335); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.14s 00:00:00.38 Elapsed: 00:00:00.42
# Mc/sec: 911.35
//
Query:       MMETSP1137-20121227|7115_1  [L=353]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (353 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        53  (0.0129205); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.17s 00:00:00.42 Elapsed: 00:00:00.32
# Mc/sec: 1456.00
//
Query:       MMETSP1137-20121227|7116_1  [L=90]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (90 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        52  (0.0126767); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:00.31
# Mc/sec: 383.19
//
Query:       MMETSP1137-20121227|7117_1  [L=362]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (362 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       107  (0.0260848); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.14s 00:00:00.40 Elapsed: 00:00:00.41
# Mc/sec: 1165.37
//
Query:       MMETSP1137-20121227|7118_1  [L=228]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (228 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        46  (0.011214); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.13s 00:00:00.34 Elapsed: 00:00:00.33
# Mc/sec: 911.92
//
Query:       MMETSP1137-20121227|7119_1  [L=1394]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
          0 1661.6   0.0          0 1335.1   0.0    2.0  2  TIGR02025 BchH: magnesium chelatase, H subunit
   4.3e-183  608.9   0.0     3e-182  606.1   0.0    1.9  1  TIGR02257 cobalto_cobN: cobaltochelatase, CobN subunit


Domain annotation for each model (and alignments):
>> TIGR02025  BchH: magnesium chelatase, H subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  324.9   0.0    1e-100   2.1e-97       2     353 ..      74     432 ..      73     437 .. 0.95
   2 ! 1335.1   0.0         0         0     342    1271 .]     437    1394 .]     433    1394 .] 0.98

  Alignments for each domain:
  == domain 1    score: 324.9 bits;  conditional E-value: 1e-100
   TIGR02025   2 rvvlvvleeqlnaalsraaaelnreld.laadleivaleelkekekleevekaikeadllfvsllfledqvrklkevlseer.qvkavvvvesapelmkltklGsfala.kseeksgilkllkkladlvkkeeedklaaqlkllktvpkllkfiPgekaqDlrnyllvyqyWlngskenlanlllllvdkYlaselg......vkveapveypdiglyHPdakklfetekeykewkkkre....gvkaekagrvgllllRkhllaenkahidnlirelEakglqvvpafakGldfrkaveeflmkdsteakkvDavvsltgFsLvGGPAesdeaaakeiLkkldvPylvaiPllfqtieeWkase 353
                 +vv+vvle+q++a+l+ a + +n  ++ +a + + + leel+++ ++e+++k++ ea+++++sl+f+++ ++k++ +++ +r +++av+v+ s+p++m+++k+Gsf +a  +++k+ + +++kk++     ++++ ++++lkl++t+pk+lk++Pg+ka+D+r++++++qyWl+gs+en+++lll l+ +Y+   ++      + v +p ++pd g++HP a+k+fet +ey +w ++ +    g+  ++a++vg++l+++h+ ++++ah+++ i elE++g+ v+p++++ ldf++ ++e++  +++    vD v++ltgF+LvGGPA++d+++a+  L+kld+Pyl+a+P +fqt+eeWk+se
  MMETSP1137-20121227|7119_1  74 KVVYVVLESQYQASLTTACKRINAGQPgVAVECSGYILEELRDEANYEQFKKDVAEANIFIGSLIFVQELADKVVAAVEPNRdNLDAVCVFPSMPAVMRMNKIGSFTMAsMGQSKNVMVDFMKKNKP----SGTSFQDGMLKLVRTLPKVLKYLPGDKAKDARSFMMSLQYWLGGSPENIEALLLNLASNYVPEVMEkgmlneMPVLEPEVIPDRGIWHPVASKVFETPAEYMQWLREEHapsvGIDVDTAPVVGIVLQKSHINTKDDAHYVSFIMELESRGALVLPTYTGALDFSVCIDEYFFLNGKT--LVDSVINLTGFALVGGPATQDHPKAVATLQKLDRPYLCAVPATFQTFEEWKDSE 432
                 89**********************76626789*************************************************99**************************889999999****99877....999**********************************************************9876666655444445667899*********************988777999999**********************************************************9998..9**************************************************887 PP

  == domain 2    score: 1335.1 bits;  conditional E-value: 0
   TIGR02025  342 lfqtieeWkaselGlaplqvalsvaiPElDGaiepvilgglegeagkviaveerlealaervkrlvrLRkksnaekkvaivvfsfPPdkGnvgtAAyLdvfesllellkklkdeGYdveelPesveeLieavledeeeqlksadenvaarieveqkekltpelerieeqWgkapGellkdgdellilGaqlGnvfigvqPslGyegDPmrLlferdaaPhhafaafYrwldkefkAdAllHfGtHGslEfmPGkqvGlsgecwpdrLlgdlPnlYlYavnnPsEatiAkRRglatlvsylvPPlerAGLYkelreLkeliaeyrekkee.egaeileaiikkaeeleLdkdvpeik.........qeqaeefvkrlyiklleleerliplgLhvlGeapsaeelvdtlvelvsldre...ersLpelvletlgknleeie.......leeieslekvteaaavavkrlveealeelergsfaekle.........keelekvlaksklpeldkekldrlleeleailkllledeElegllkaLeGeyippaPGgDlvRdpevlPtGrniHalDPyriPseaAvkagkrvadkllekkraeesgeyPEsiAvvlWGtDniktkGesvaqvlallGaepvkdelGriakveLiPLeklGrPRiDvvvtlsgiFRDllsnqielLdeavklAAeAdEPeemnfvrkHalaqaeelgidveeAaaRvfsnapGsygsnvndlvedsaWeeeeeLadtfikRksfaygkeekg..ekkpeilqslLktvdlvfqnvDsvElgltdidhYyeslggvskaverakgkkatavyvedttkkakakvreleelvrleaRtklLnPkWyegmlehGyeGvreiskrltntlGWsataeavddWvYdqltetyilDeemrerlaelnpealrkivsrllEasgRglWeadeeklekLqelyeeledrlEGv 1271
                  +fqt+eeWk+selGl+p+qval+va+PElDGaiep+i++g++g +g+ i+  +r+e la+r+ ++++LR+k+ ++kkvai+vfsfPPdkGnvgtAAyL+vf s++e lk++k+eGY+v+elPesve+L++ vl+++e+ l s ++nv+ +++v+++++ltp+ +++ee+Wg +pG+l++dg +ll++G+++GnvfigvqPs+GyegDPmrLl++++a+Phh+faa+Y++++k f AdA+lHfGtHGslEfmPGkqvG+sg c+pdrL+   PnlY+Ya+nnPsEatiAkRR++a ++syl+PP+e+AGLYk+l+eL el+++y+  +e+ +g +i++ i++ a++++Ldkdv+ +           eq++ +v+r+y k++e+e+rl+p+gLh +G +p+a e+v+tlv+++s dr+   ++sLp +++e++g+++e+i+       le+    +++++a+++av++ v++ ++++ r++ ++ l           +++++ la+   + + ++ + +l+++le++lk++++d+E+ +ll +L+G++i+p+PGgD++R+p vlPtG+n+HalDP++iP+ aA+  +k v+d+lle++ a+++g+yPEsiA vlWGtDnikt+Ges+aqvl+++G++p +d+lGr++++e iPLe+lGrPRiDvvvt+sg+FRDl++nq++lLd+avkl Ae dEP+emnfvrkHal+qaee+g+++++Aa+Rvfsna+Gsy++nv  ++e++ We e++L+d f+ Rk+fa++ ++ g  +++++i++s Lk vd +fqn+Ds+E++ltd++hY++s++++  a  r++g k+++++v+dtt +a+a+vr+l+e+vrl+aRtklLnPk+yegml+ GyeG rei krl nt+GWsata+avd++vY+++++t+i Deemr+rl + np+a+r++v+++lEa+gRg+We++ee+l++L++ly+e++d++EGv
  MMETSP1137-20121227|7119_1  437 TFQTFEEWKDSELGLHPVQVALQVALPELDGAIEPIIYAGRDGVTGRSIPQADRIEVLARRALKWASLRRKEVKDKKVAITVFSFPPDKGNVGTAAYLNVFGSIFECLKAMKAEGYEVGELPESVEDLVDEVLHEKEARLASPQLNVEYKMSVSEYKELTPYASELEENWGPPPGQLNSDGANLLVYGKRFGNVFIGVQPSFGYEGDPMRLLYAKSASPHHGFAAYYTYVEKVFGADAVLHFGTHGSLEFMPGKQVGMSGGCYPDRLIQSTPNLYYYAANNPSEATIAKRRSYANTISYLTPPAENAGLYKGLKELGELVGSYQGLRESgRGSTIVNSIVATARQCNLDKDVDLPGeeddtaeltLEQRDRVVGRVYSKIMEIESRLLPCGLHTVGVPPTAMEAVATLVNIASIDRPeesIKSLPRSIAEAIGRDIEQIYrnsdngvLEDATLRQNIVTATRAAVQACVDRSTDANGRVTEVKSLFdnmadmfmgGSPMKRALADN-GFTVSDDAIAPLFKYLEFCLKQVVADNEMGALLDGLNGKFITPGPGGDPIRNPLVLPTGKNMHALDPQAIPTIAACDCAKIVVDRLLERQAADNDGAYPESIAFVLWGTDNIKTYGESLAQVLWMVGVRPLPDSLGRVNQIEAIPLEELGRPRIDVVVTCSGVFRDLFINQMNLLDRAVKLVAELDEPLEMNFVRKHALEQAEEMGVSLRDAATRVFSNAAGSYSANVGLAIENGGWEGEDQLQDQFLARKGFAFNADKPGvlDAAEDIFKSSLKRVDVTFQNLDSSEISLTDVSHYFDSDPTKVVAGLRTDG-KKPTSFVADTT-TANAQVRTLSETVRLDARTKLLNPKFYEGMLKSGYEGTREITKRLRNTMGWSATAGAVDNFVYEDANDTFIADEEMRQRLLDTNPNAFRDMVTTFLEANGRGYWETSEENLDRLRQLYAEVDDKIEGV 1394
                  69**************************************************************************************************************************************************************************************************************************************************************************************************************************************88***********************998888888888899************************************************999999************************99999999*********************9999955544435778887767778888877.68899999************************************************************************************************************************************************************************************************************************************************************99899************************************************.99*********.9999***************************************************************************************************************************8 PP

>> TIGR02257  cobalto_cobN: cobaltochelatase, CobN subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  606.1   0.0  1.5e-185    3e-182     162    1225 ..     269    1388 ..     207    1389 .. 0.84

  Alignments for each domain:
  == domain 1    score: 606.1 bits;  conditional E-value: 1.5e-185
   TIGR02257  162 ltkdeavveakaikkagladPlrgeikkek.....................lakvGilfYralllagdtaliealidaLrqrglrplpvfvssLkdkevlaevldllkeekvevvltttaFas....skeeadegetlldsldvPvlqvlvsn.................ksreeWedssrGleprDLalqvvlPelDgRiltravsFkevsevdekleskvvaykpdedrikfvadlaanwiklqrkekaerkialvlanYPvrdGRigngvGLdtPasvvellkalkeeGYdlgekplPkngdaLiklllkgrtnslesedrepleklsldeylkffeklpkkakeeivarwgepsqdpdledkkgfaiaglrfGnivvliqPdRGydadkkadyhsPdLaPphrylafylwlrkvfgadalvhvGkhGtleWLPGksvaLseeCfPeivlgplPhiYPFivndPGegaqakRRtqavildhLtPPLtraelygklkkLeelvdeyyeaklldsrRlevlekqilelvkdedldeeisvke..sdkldsilekld.......ayLCdLkesqirdGLhifGrapegrkltdlllalarv..PtskkkGltralardlgle.............ld.Plaadegeslseadkailadlskaklrtlgdtlealeeqaaslvekllrkeqakdeaaaire.....vlekikeellpsilk.steaekasllkaleGryvaaGpsGaPsRGrsdvLPtGrnfysvDlRalPteaawdlgkksaeelierylqe.hGealrklalsvWgtatmRtGGediaqaLallGvrPvWdaasrrvvdleviPlslLgRPRvDvtlRisGlFRDaFpnlialvdkavqavaeldedeelnplaarvraee........kassRifGskPgaYGaglqelieekaWeekedlaeaylkwssyaYgageegi..aarealeerlkkiqvvlhnqDnrehDlLdsddyyqFqGGlsaaveklsGkrpeiyfgDhsrkekpkirkleeeldrvvRaRvvnpkwieGmkrhGykGafelaatvDylfaydatteavsdwlyeaiadaylldeevkeFlieknPaalrdlaeRlleaanRelWqeakeeileelkklileae 1225
                  + ++ +v e++ i+  g+++P++ ++ ++                       + vGi++ ++++++ d a   ++i +L++rg   lp +  +L  + ++ e   l  ++ v+ v++ t+Fa     ++++ ++  + l++ld+P l  + ++                 ++ eeW+ds+ Gl+p  +alqv+lPelDg i   + + ++ ++          +  p+ dri+ +a +a +w++l+rke +++k+a+ +  +P  +G +g +  L++  s+ e lka+k+eGY++ge  lP++ ++L++ +l+ ++  l+s + ++ +k+s+ ey+++   +     +e++++wg p  + + + + ++ + g rfGn+++++qP+ Gy+ d+ + +++    P h++ a+y +++kvfgada++h G hG+le++PGk v++s  C+P+ ++ + P++Y +  n+P e++ akRR+ a ++ +LtPP + a+ly++lk+L elv  y    l +s R +++ ++i++++++ +ld+++ +    +d+ + +le+ d       + + ++    +  GLh  G  p  ++ + +l+ +a    P+++ k l r++a+  g +              d  l ++   +   a +a++ d+s++   ++ +  +  +++a +++    +k +  d+  ++++     ++    + l   +++  + +e+ +ll +l+G+++++Gp G P R ++ vLPtG+n+++ D  a+Pt aa d +k   ++l+er   + +G  ++++a+ +Wgt +++t Ge +aq+L ++GvrP  d+   rv ++e iPl+ LgRPR+Dv++  sG+FRD F n+++l+d+av++vaelde+ e n + ++  ++          a +R+f  + g+Y a +  +ie++ We +++l + +l    +a++a + g+  aa++ ++ +lk+++v  +n D  e  l d + y+       +a  +  Gk+p+ ++ D++   ++++r+l+e +    R++++npk+ eGm + Gy G  e+++ +   +++ at++av++++ye + d++++dee+++ l++ nP a+rd+   +lea+ R+ W+ ++ e l++l++l +e++
  MMETSP1137-20121227|7119_1  269 MLNEMPVLEPEVIPDRGIWHPVASKVFETPaeymqwlreehapsvgidvdtAPVVGIVLQKSHINTKDDAHYVSFIMELESRGALVLPTYTGALDFSVCIDEYFFLNGKTLVDSVINLTGFALvggpATQDHPKAVATLQKLDRPYLCAVPATfqtfeewkdsesxxatfQTFEEWKDSELGLHPVQVALQVALPELDGAIEPIIYAGRDGVT---------GRSIPQADRIEVLARRALKWASLRRKEVKDKKVAITVFSFPPDKGNVGTAAYLNVFGSIFECLKAMKAEGYEVGE--LPESVEDLVDEVLHEKEARLASPQLNVEYKMSVSEYKELTPYA-----SELEENWGPPPGQLNSD-GANLLVYGKRFGNVFIGVQPSFGYEGDPMRLLYAKSASPHHGFAAYYTYVEKVFGADAVLHFGTHGSLEFMPGKQVGMSGGCYPDRLIQSTPNLYYYAANNPSEATIAKRRSYANTISYLTPPAENAGLYKGLKELGELVGSYQG--LRESGRGSTIVNSIVATARQCNLDKDVDLPGeeDDTAELTLEQRDrvvgrvySKIMEIESRLLPCGLHTVGVPPTAMEAVATLVNIASIdrPEESIKSLPRSIAEAIGRDieqiyrnsdngvlEDaTLRQNIVTATRAAVQACV-DRSTDANGRVTEVKSLFDNMADMFMGGSPMKRALADNGFTVSDdaiapLF----KYLEFCLKQvVADNEMGALLDGLNGKFITPGPGGDPIR-NPLVLPTGKNMHALDPQAIPTIAACDCAKIVVDRLLERQAADnDGAYPESIAFVLWGTDNIKTYGESLAQVLWMVGVRPLPDSL-GRVNQIEAIPLEELGRPRIDVVVTCSGVFRDLFINQMNLLDRAVKLVAELDEPLEMNFVRKHALEQAeemgvslrDAATRVFSNAAGSYSANVGLAIENGGWEGEDQLQDQFLARKGFAFNADKPGVldAAEDIFKSSLKRVDVTFQNLDSSEISLTDVSHYFDSDPTKVVAGLRTDGKKPTSFVADTTTA-NAQVRTLSETVRLDARTKLLNPKFYEGMLKSGYEGTREITKRLRNTMGWSATAGAVDNFVYEDANDTFIADEEMRQRLLDTNPNAFRDMVTTFLEANGRGYWETSE-ENLDRLRQLYAEVD 1388
                  33455667888888888888888877776667788888888777777766677788******************************************************************9998878888899999*******99887654222222222111111113457899**********************99765555544332.........2346999********************************************************************..************************************9986554.....568899***99986655.77********************************************************************************************************************************************986..55788999*****************9998653233444455555511111116677777777889*****************9999975338888899**********994444444444442121222233333223333333.33333333355666666666666665554444444433333325444444....44444444415789************************.688**********************************9876527************************************9975.79********************************************************998766555679****9999********************************************999982245688*********************************99999999************9875.689***************************************************************************************************9955.559******99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1394 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        89  (0.0216967); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.16u 0.20s 00:00:01.36 Elapsed: 00:00:01.37
# Mc/sec: 1343.01
//
Query:       MMETSP1137-20121227|7121_1  [L=639]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (639 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       193  (0.0470502); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.15s 00:00:00.57 Elapsed: 00:00:00.59
# Mc/sec: 1429.51
//
Query:       MMETSP1137-20121227|7123_1  [L=165]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (165 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       163  (0.0397367); expected 82.0 (0.02)
Passed bias filter:                       97  (0.023647); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.15s 00:00:00.32 Elapsed: 00:00:00.27
# Mc/sec: 806.60
//
Query:       MMETSP1137-20121227|7125_1  [L=233]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (233 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       191  (0.0465627); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.13s 00:00:00.35 Elapsed: 00:00:00.35
# Mc/sec: 878.67
//
Query:       MMETSP1137-20121227|7126_1  [L=208]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (208 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       101  (0.0246221); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.11s 00:00:00.30 Elapsed: 00:00:00.40
# Mc/sec: 686.34
//
Query:       MMETSP1137-20121227|7127_1  [L=174]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (174 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        70  (0.0170648); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.13s 00:00:00.31 Elapsed: 00:00:00.40
# Mc/sec: 574.15
//
Query:       MMETSP1137-20121227|7128_1  [L=67]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-09   35.9   1.0    1.7e-09   35.6   0.7    1.1  1  TIGR00003 TIGR00003: copper ion binding protein
    2.2e-09   35.6   1.1    2.3e-09   35.5   0.8    1.0  1  TIGR02052 MerP: mercuric transport protein periplasmic component
  ------ inclusion threshold ------
       0.14   10.1   2.0       0.35    8.8   0.7    2.1  3  TIGR03980 prismane_assoc: hybrid cluster protein-associated redox disulfide domain


Domain annotation for each model (and alignments):
>> TIGR00003  TIGR00003: copper ion binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.6   0.7   1.2e-12   1.7e-09       4      66 .]       5      66 ..       3      66 .. 0.88

  Alignments for each domain:
  == domain 1    score: 35.6 bits;  conditional E-value: 1.2e-12
   TIGR00003  4 lqVkgmsCnHCVdkiEkfVGeleGVsavkvdle.kekvvVeFdapkvsaeeIkeAildaGyeve 66
                l V gmsC  C   +E+ V ++ GV  vk++ +  +kv V  +       +IkeAi+ aG++ve
  MMETSP1137-20121227|7128_1  5 LTVTGMSCGGCSGSVENVVKKVPGVAEVKAEFQpTNKVTVTGED--YDTMAIKEAIEKAGFKVE 66
                78******************************835678887554..4899**********9985 PP

>> TIGR02052  MerP: mercuric transport protein periplasmic component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.5   0.8   1.7e-12   2.3e-09      24      86 ..       2      63 ..       1      66 [. 0.88

  Alignments for each domain:
  == domain 1    score: 35.5 bits;  conditional E-value: 1.7e-12
   TIGR02052 24 tvtlevPgmtcaacPitvktalkkvdGvekaevsfk.qklavvtfddektnvkaltkatkdaGy 86
                t+ l+v gm+c+ c  +v++ +kkv+Gv  ++ +f+ +++++vt +d  t   a+ +a ++aG+
  MMETSP1137-20121227|7128_1  2 TLVLTVTGMSCGGCSGSVENVVKKVPGVAEVKAEFQpTNKVTVTGEDYDT--MAIKEAIEKAGF 63
                7899*************************999999746678899988877..689999999998 PP

>> TIGR03980  prismane_assoc: hybrid cluster protein-associated redox disulfide domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   0.7   0.00026      0.35      20      34 ..       4      18 ..       1      26 [. 0.85
   2 ?   -0.8   0.0      0.25   3.5e+02       7      20 ..      19      32 ..      17      36 .. 0.83
   3 ?   -1.1   0.0      0.31   4.2e+02       4      13 ..      51      60 ..      49      63 .. 0.67

  Alignments for each domain:
  == domain 1    score: 8.8 bits;  conditional E-value: 0.00026
   TIGR03980 20 vlmeygmhCvGCpia 34
                vl+  gm C GC+ +
  MMETSP1137-20121227|7128_1  4 VLTVTGMSCGGCSGS 18
                88999*******987 PP

  == domain 2    score: -0.8 bits;  conditional E-value: 0.25
   TIGR03980  7 igeilrkypetvev 20
                ++ +++k p ++ev
  MMETSP1137-20121227|7128_1 19 VENVVKKVPGVAEV 32
                67899999999987 PP

  == domain 3    score: -1.1 bits;  conditional E-value: 0.31
   TIGR03980  4 dmtigeilrk 13
                +m i+e ++k
  MMETSP1137-20121227|7128_1 51 TMAIKEAIEK 60
                5777777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (67 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       172  (0.0419308); expected 82.0 (0.02)
Passed bias filter:                      145  (0.0353486); expected 82.0 (0.02)
Passed Vit filter:                        20  (0.00487567); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.14u 0.18s 00:00:00.32 Elapsed: 00:00:00.31
# Mc/sec: 285.27
//
Query:       MMETSP1137-20121227|7129_1  [L=336]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (336 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       145  (0.0353486); expected 82.0 (0.02)
Passed bias filter:                      113  (0.0275475); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.10s 00:00:00.37 Elapsed: 00:00:00.45
# Mc/sec: 985.52
//
Query:       MMETSP1137-20121227|7130_1  [L=91]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        0.4    7.0  10.5       0.41    7.0   7.2    1.0  1  TIGR03719 ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family


Domain annotation for each model (and alignments):
>> TIGR03719  ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   7.2   9.9e-05      0.41     249     308 ..       2      66 ..       1      89 [. 0.73

  Alignments for each domain:
  == domain 1    score: 7.0 bits;  conditional E-value: 9.9e-05
   TIGR03719 249 qkekrleqeekeeaarkkalkkeleWvrsspkarq.....akskarlaryeelaseesekkeeta 308
                 q +k  e+ee + ++ +++ ++e+ W++ ++k+ +     ak karlar+e++ ++++++ e+ +
  MMETSP1137-20121227|7130_1   2 QERKEREREELRRRQAERTADSEQWWLKYQTKGGNkqheiAKWKARLARFEKIVNSSTAEGEKAN 66 
                 5666667778888888999*********999974322445899**********877666544433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (91 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       306  (0.0745978); expected 82.0 (0.02)
Passed bias filter:                      172  (0.0419308); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.17u 0.19s 00:00:00.36 Elapsed: 00:00:00.56
# Mc/sec: 210.72
//
Query:       MMETSP1137-20121227|7131_1  [L=276]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.7e-05   22.4   0.0    2.5e-05   21.9   0.0    1.2  1  TIGR00537 hemK_rel_arch: putative methylase
    7.5e-05   20.1   0.0    0.00013   19.4   0.0    1.3  1  TIGR03534 RF_mod_PrmC: protein-(glutamine-N5) methyltransferase, release factor-specific
     0.0059   13.5   0.0     0.0089   12.9   0.0    1.2  1  TIGR00536 hemK_fam: methyltransferase, HemK family
  ------ inclusion threshold ------
      0.028   11.7   0.0      0.041   11.1   0.0    1.2  1  TIGR00406 prmA: ribosomal protein L11 methyltransferase


Domain annotation for each model (and alignments):
>> TIGR00537  hemK_rel_arch: putative methylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.9   0.0   2.5e-08   2.5e-05      21      67 ..     130     177 ..     122     205 .. 0.89

  Alignments for each domain:
  == domain 1    score: 21.9 bits;  conditional E-value: 2.5e-08
   TIGR00537  21 dd.vleiGaGtGlvairlkekgkkivatdinPfavkllkenaklnnve 67 
                  + vle+GaGt    i+++  g  +v+td++ ++  l+  na +nnv+
  MMETSP1137-20121227|7131_1 130 RRrVLEVGAGTCTAGIAAATCGYEVVCTDVASWSLPLATANAHMNNVG 177
                 444*******************************************97 PP

>> TIGR03534  RF_mod_PrmC: protein-(glutamine-N5) methyltransferase, release factor-specific
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.0   1.2e-07   0.00013      85     161 ..     126     206 ..     113     208 .. 0.85

  Alignments for each domain:
  == domain 1    score: 19.4 bits;  conditional E-value: 1.2e-07
   TIGR03534  85 kkkeklkvlDlgtGsGaIalalakelpdakviavDiseeAlkvarkNakrlglke.veflksdl.....lealeekgkfdliv 161
                 +++   +vl++g+G+ + ++a a     ++v+++D+ + +l +a +Na+ +++   v++ + d+     l+ + + g fdli+
  MMETSP1137-20121227|7131_1 126 PREGRRRVLEVGAGTCTAGIAAATC--GYEVVCTDVASWSLPLATANAHMNNVGGlVRVARFDWddddgLKRVAAMGPFDLII 206
                 44556899**999998887776665..9**************************9*********77777677799999***98 PP

>> TIGR00536  hemK_fam: methyltransferase, HemK family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.9   0.0   8.7e-06    0.0089     111     174 ..     126     187 ..     111     207 .. 0.82

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 8.7e-06
   TIGR00536 111 sqeplkhilDlgtGsGcIalalAleipnaeviavDistdalavaeeNaeklkleerveliqsnl 174
                 ++e   ++l++g G+   ++a  ++    ev   D+ +  l +a +Na+ +++ + v++ + ++
  MMETSP1137-20121227|7131_1 126 PREGRRRVLEVGAGTCTAGIA--AATCGYEVVCTDVASWSLPLATANAHMNNVGGLVRVARFDW 187
                 566668899988888666655..555567****************************9999888 PP

>> TIGR00406  prmA: ribosomal protein L11 methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0     4e-05     0.041     160     216 ..     130     185 ..     122     208 .. 0.86

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 4e-05
   TIGR00406 160 dkkviDvGcGSGiLsiaalklgaakvvavDiDplavesarkNlelNqvsdllqvkle 216
                 +++v++vG+G    +iaa+  g + vv  D+ + ++  a  N+++N+v  l++v   
  MMETSP1137-20121227|7131_1 130 RRRVLEVGAGTCTAGIAAATCGYE-VVCTDVASWSLPLATANAHMNNVGGLVRVARF 185
                 5789*****************976.7889*******************999888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (276 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        81  (0.0197465); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.25u 0.18s 00:00:00.43 Elapsed: 00:00:00.79
# Mc/sec: 461.13
//
Query:       MMETSP1137-20121227|7132_1  [L=34]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (34 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        61  (0.0148708); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.13s 00:00:00.25 Elapsed: 00:00:00.66
# Mc/sec: 67.99
//
Query:       MMETSP1137-20121227|7133_1  [L=346]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (346 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        64  (0.0156021); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.13s 00:00:00.37 Elapsed: 00:00:00.37
# Mc/sec: 1234.28
//
Query:       MMETSP1137-20121227|7134_1  [L=598]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (598 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        64  (0.0156021); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.14s 00:00:00.51 Elapsed: 00:00:00.51
# Mc/sec: 1547.64
//
Query:       MMETSP1137-20121227|7135_1  [L=591]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   4.8e-203  673.8   1.4   9.3e-158  524.2   0.0    3.0  2  TIGR01135 glmS: glutamine-fructose-6-phosphate transaminase (isomerizing)
    1.5e-13   48.8   0.1    1.6e-10   38.8   0.1    3.0  3  TIGR01134 purF: amidophosphoribosyltransferase
    7.1e-10   36.2   0.1    1.2e-09   35.5   0.1    1.3  1  TIGR00274 TIGR00274: N-acetylmuramic acid 6-phosphate etherase
      4e-08   29.8   0.0      7e-08   29.0   0.0    1.3  1  TIGR03104 trio_amidotrans: asparagine synthase family amidotransferase
    8.7e-06   23.6   0.1    2.3e-05   22.2   0.0    1.7  2  TIGR03127 RuMP_HxlB: 6-phospho 3-hexuloisomerase
    1.8e-05   21.8   0.0      3e-05   21.0   0.0    1.3  1  TIGR01536 asn_synth_AEB: asparagine synthase (glutamine-hydrolyzing)
    4.9e-05   20.0   0.0    0.00015   18.4   0.0    1.6  2  TIGR03108 eps_aminotran_1: exosortase A system-associated amidotransferase 1
    0.00053   16.8   0.0    0.00097   16.0   0.0    1.4  1  TIGR02128 G6PI_arch: bifunctional phosphoglucose/phosphomannose isomerase
     0.0022   15.4   0.1      0.005   14.3   0.0    1.5  1  TIGR00393 kpsF: sugar isomerase, KpsF/GutQ family
     0.0023   15.9   0.0     0.0054   14.7   0.0    1.6  1  TIGR00441 gmhA: phosphoheptose isomerase
  ------ inclusion threshold ------
       0.01   13.0   0.0      0.021   12.0   0.0    1.4  1  TIGR03442 TIGR03442: TIGR03442 family protein


Domain annotation for each model (and alignments):
>> TIGR01135  glmS: glutamine-fructose-6-phosphate transaminase (isomerizing)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  142.1   0.7   1.3e-44   4.8e-42      17     129 ..       2     136 ..       1     141 [. 0.83
   2 !  524.2   0.0  2.5e-160  9.3e-158     162     607 .]     144     591 .]     141     591 .] 0.94

  Alignments for each domain:
  == domain 1    score: 142.1 bits;  conditional E-value: 1.3e-44
   TIGR01135  17 leglkrLEYRGYDSaGiAvveegk.....................levvkkkGkveelkeklee.kelegkvgigHtRWaTHGkpteeNaHPHvdekgeiavvhNGiieNykelreelekkgvefkSdTDtEvia 129
                 l+gl rLEYRGYDSaG+A+++ +k                     ++v k++Gkv+ lk+ +e+  +  g+vgi+HtRWaTHG pt++NaHPH++++g +avvhNGi+eN+ +lr++l +kg+++ SdTDtE+ia
  MMETSP1137-20121227|7135_1   2 LSGLARLEYRGYDSAGVAIIQPNKaeangteaaskrvrrnacehcVKVLKTAGKVSALKTMCERdGDSAGTVGIAHTRWATHGPPTDVNAHPHTSTDGGLAVVHNGIVENFGALRQQLMSKGYKMXSDTDTELIA 136
                 79****************99754312222222222333333333378999************9945599*****************************************************************8 PP

  == domain 2    score: 524.2 bits;  conditional E-value: 2.5e-160
   TIGR01135 162 ldkdepeklvaarkesPLivglgegenfvaSdvtallevtrrvvvLedgeialvskde.veikdaegkkverevkvieldaeaaekggyrhfmlkEiyeqpkalretlegrleeeekvleels...aeellkeveritivacGtsyhaglvakylleslakipvevevaSEfryrkpvvkkktlviaisQSGETaDtlealrlakekgakvlaivNvkeSalareadavlltrAGpEigVAsTKaftaqlvvlllLalalakargalkaeeeeelvealeelpelvekvlkkeekikelaeklakkkkflflGRglaypialEgALKlKEisYihAeayaagElKHGpiALidenlpvvaiapeds.llekvksnveEvkaRgaevivlasedaeaeeeeadevikvpeveellaplvsvvplqllayhialakgtdvDkPrnLAKsVTVE 607
                 l+ +ep+klv ark+sPLi+g+ge+e+++aSd++a++e trrv +L+dge+a++++++ ++i+  ++ k++re+++++l+ ++++kg+++hfmlkEi eqp++l+++++gr++  +++++  +   +   l ++ ri ivacGts+ha+l+++yl+e+la++ veve+aSEfryr+p + k+++viaisQSGETaDtl+al+la+++g   ++i+N+++S+lar ++a ++++AGpEigVAsTKaf aq+vvl+++al+lak+r++l++++ +e ++al +lp+l+++vl+++e++ ++a+ ++ +++fl+lGRg+++p+alEgALKlKEisYihAe+y+a+E+KHGpiALide +pvv+iap++   + k+ksn+eEv aRg++vi++++ed+e+ ++ +        ++ l    ++  ++ql+ay+ia  + ++vD+PrnLAKsVTVE
  MMETSP1137-20121227|7135_1 144 LEDHEPDKLVGARKGSPLILGIGEDEYLLASDASAVIERTRRVAYLNDGELAVITRTGgYQIQTLDNVKITREIQELSLSLQEIQKGTFKHFMLKEICEQPEVLENAMRGRVKAGDSEIHFGGlmqVMPRLVSAPRIIIVACGTSWHAALLGEYLIENLARMSVEVEYASEFRYRRPLLFKDDVVIAISQSGETADTLAALNLARKHGCLCIGICNTVGSTLARSTEAGVYLHAGPEIGVASTKAFSAQIVVLIMFALKLAKERHELSDDALKEKIAALATLPDLLRRVLDQKEQVLHMARVFKYASNFLYLGRGYNFPVALEGALKLKEISYIHAEGYPAAEMKHGPIALIDEFMPVVIIAPRSDpNYLKLKSNIEEVLARGGSVIAITEEDNEDLDSRC---ECSAPHRGLSDAAAHGAAVQLMAYYIADMRKCNVDQPRNLAKSVTVE 591
                 57899***********************************************999876166***************************************************9988743333244566778999************************************************************************************************************************************************************************************************************************************9876599*********************99998644443...333345556666677899****************************9 PP

>> TIGR01134  purF: amidophosphoribosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.0      0.12        46      19      42 ..       4      27 ..       1      42 [. 0.82
   2 !   38.8   0.1   4.2e-13   1.6e-10      41     131 ..      47     136 ..      30     157 .. 0.81
   3 !    5.5   0.0    0.0053         2     170     225 ..     153     206 ..     139     217 .. 0.76

  Alignments for each domain:
  == domain 1    score: 1.0 bits;  conditional E-value: 0.12
   TIGR01134 19 aLlaLQHRGQeaaGvavsdgeklr 42
                +L  L  RG ++aGva  + +k +
  MMETSP1137-20121227|7135_1  4 GLARLEYRGYDSAGVAIIQPNKAE 27
                8999***********988766654 PP

  == domain 2    score: 38.8 bits;  conditional E-value: 4.2e-13
   TIGR01134  41 lrlkkgnGlvsdvfee.ekleklkgkvaagHvRYsTaGsskseeaqPlvvssavgglalaHNGnlvnaeelreeleeegrkfntssDsevll 131
                 +++ k+ G vs   +  e++ + +g+v+++H+R++T G  ++ +a P +  +  ggla++HNG + n+ +lr++l+++g k+ +++D+e+++
  MMETSP1137-20121227|7135_1  47 VKVLKTAGKVSALKTMcERDGDSAGTVGIAHTRWATHGPPTDVNAHPHTS-TD-GGLAVVHNGIVENFGALRQQLMSKGYKMXSDTDTELIA 136
                 55566777777643321233334899**************9******996.44.67*********************************986 PP

  == domain 3    score: 5.5 bits;  conditional E-value: 0.0053
   TIGR01134 170 vavrDPvGvrPLvlgrkedgyvvaSEsvAldlgaelvrdvepgevvvlkdge.lesr 225
                 v++r  +G  PL+lg  ed+y++aS+ +A+   ++ v  ++ ge+ v+++ + ++ +
  MMETSP1137-20121227|7135_1 153 VGAR--KG-SPLILGIGEDEYLLASDASAVIERTRRVAYLNDGELAVITRTGgYQIQ 206
                 5555..46.8******9************9866666888889998776665535555 PP

>> TIGR00274  TIGR00274: N-acetylmuramic acid 6-phosphate etherase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.5   0.1   3.3e-12   1.2e-09     124     203 ..     322     399 ..     311     405 .. 0.89

  Alignments for each domain:
  == domain 1    score: 35.5 bits;  conditional E-value: 3.3e-12
   TIGR00274 124 ltkndvvvgiaasGrtPyviaaleyarklGaktiaiacnpesavskqadvaievivGpeiltGssrlkagtaqklvlnll 203
                 l k+dvv++i+ sG t    aal+ ark G+  i+i+   +s ++++++  + +  Gpei   s+  ka  aq +vl ++
  MMETSP1137-20121227|7135_1 322 LFKDDVVIAISQSGETADTLAALNLARKHGCLCIGICNTVGSTLARSTEAGVYLHAGPEIGVAST--KAFSAQIVVLIMF 399
                 5689********************************************************77776..6777777777665 PP

>> TIGR03104  trio_amidotrans: asparagine synthase family amidotransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.0   0.0   1.9e-10     7e-08      40     105 ..      70     136 ..      52     142 .. 0.86

  Alignments for each domain:
  == domain 1    score: 29.0 bits;  conditional E-value: 1.9e-10
   TIGR03104  40 qgkvalGhrrlkiid.lseasqqPmvdaelglalvfnGaiynykelreelealGyrffsegdtevil 105
                 +g+v++ h r +     ++  + P   ++ gla+v+nG + n+ +lr++l+++Gy++ s++dte+i 
  MMETSP1137-20121227|7135_1  70 AGTVGIAHTRWATHGpPTDVNAHPHTSTDGGLAVVHNGIVENFGALRQQLMSKGYKMXSDTDTELIA 136
                 56677777777766425788999*****************************************985 PP

>> TIGR03127  RuMP_HxlB: 6-phospho 3-hexuloisomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.2   0.0   6.2e-08   2.3e-05      68     126 ..     320     378 ..     255     395 .. 0.80
   2 ?   -3.5   0.0         5   1.9e+03      94     114 ..     521     541 ..     515     547 .. 0.75

  Alignments for each domain:
  == domain 1    score: 22.2 bits;  conditional E-value: 6.2e-08
   TIGR03127  68 paikegDlliiiSgSGetksvvkvakkakelgakviaittekestlgkladvvvelpaa 126
                 p + ++D++i+iS SGet+  +++ + a++ g   i i  + +stl++ +++ v l a 
  MMETSP1137-20121227|7135_1 320 PLLFKDDVVIAISQSGETADTLAALNLARKHGCLCIGICNTVGSTLARSTEAGVYLHAG 378
                 77889********************************************9999988775 PP

  == domain 2    score: -3.5 bits;  conditional E-value: 5
   TIGR03127  94 kakelgakviaittekestlg 114
                 ++ + g++viait e++  l 
  MMETSP1137-20121227|7135_1 521 EVLARGGSVIAITEEDNEDLD 541
                 556678999999999887775 PP

>> TIGR01536  asn_synth_AEB: asparagine synthase (glutamine-hydrolyzing)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.0   0.0   8.1e-08     3e-05      62     105 ..      91     135 ..      64     145 .. 0.83

  Alignments for each domain:
  == domain 1    score: 21.0 bits;  conditional E-value: 8.1e-08
   TIGR01536  62 aQPlsnek.evvivfnGEIYNheeLreeleekGyeFetksDtEVi 105
                 a P  +++   ++v+nG + N+ +Lr++l  kGy+  +++DtE+i
  MMETSP1137-20121227|7135_1  91 AHPHTSTDgGLAVVHNGIVENFGALRQQLMSKGYKMXSDTDTELI 135
                 667778888899*******************************98 PP

>> TIGR03108  eps_aminotran_1: exosortase A system-associated amidotransferase 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.0     4e-07   0.00015      58     104 ..      89     135 ..      65     139 .. 0.83
   2 ?   -2.2   0.0      0.68   2.5e+02     382     416 ..     247     281 ..     245     302 .. 0.88

  Alignments for each domain:
  == domain 1    score: 18.4 bits;  conditional E-value: 4e-07
   TIGR03108  58 ggkqPlanedgsvvvvfnGeiynfkelvkelealGhqfrtksdtevi 104
                   + P ++ dg  +vv+nG + nf  l+++l ++G+++ +++dte i
  MMETSP1137-20121227|7135_1  89 VNAHPHTSTDGGLAVVHNGIVENFGALRQQLMSKGYKMXSDTDTELI 135
                 4578999**************************************98 PP

  == domain 2    score: -2.2 bits;  conditional E-value: 0.68
   TIGR03108 382 aeervrsklPlalrkplfgllGklyPkldwaPrll 416
                  e+++r ++  +  +  fg l ++ P+l  aPr++
  MMETSP1137-20121227|7135_1 247 LENAMRGRVKAGDSEIHFGGLMQVMPRLVSAPRII 281
                 68999999999999999****************86 PP

>> TIGR02128  G6PI_arch: bifunctional phosphoglucose/phosphomannose isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0   2.6e-06   0.00097      33     120 ..     292     379 ..     268     430 .. 0.66

  Alignments for each domain:
  == domain 1    score: 16.0 bits;  conditional E-value: 2.6e-06
   TIGR02128  33 giagdlleelllekslevpvfvvkdyrlpakvdektlliavSYSGnTeETlsaveeakkkgakviai..TsgGkLeemakeegldvikiP 120
                 +  g++l e l  +s+ev+      yr p  ++ +  +ia+S SG T +Tl a++ a k+g   i i  T g  L++   e g+ +   P
  MMETSP1137-20121227|7135_1 292 ALLGEYLIENLARMSVEVEYASEFRYRRPLLFK-DDVVIAISQSGETADTLAALNLARKHGCLCIGIcnTVGSTLARST-EAGVYLHAGP 379
                 455666655556665554444444444444444.689**********************99988766324455554444.6666655555 PP

>> TIGR00393  kpsF: sugar isomerase, KpsF/GutQ family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.0   1.3e-05     0.005      46     121 ..     323     398 ..     319     432 .. 0.85

  Alignments for each domain:
  == domain 1    score: 14.3 bits;  conditional E-value: 1.3e-05
   TIGR00393  46 ekrdvvllisysGeskeldklipslkrlsvklialtgkpnsslaraadvvldikvekeacPlnlaPtsstvvtlvl 121
                  k dvv++is sGe+ +  + +   ++ +   i + +   s+lar +++ + ++   e+    +   s+ +v l++
  MMETSP1137-20121227|7135_1 323 FKDDVVIAISQSGETADTLAALNLARKHGCLCIGICNTVGSTLARSTEAGVYLHAGPEIGVASTKAFSAQIVVLIM 398
                 578***************99999999999999*************9998888877777666666666666665555 PP

>> TIGR00441  gmhA: phosphoheptose isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0   1.4e-05    0.0054      71     124 ..     316     369 ..     299     394 .. 0.85

  Alignments for each domain:
  == domain 1    score: 14.7 bits;  conditional E-value: 1.4e-05
   TIGR00441  71 rqvealGqkgdvllGlstsGnsknvlkaleaakdkglkvialaGkdGGklkela 124
                 r+   l  k+dv++ +s sG++++ l al+ a+++g   i+++   G  l+  +
  MMETSP1137-20121227|7135_1 316 RYRRPLLFKDDVVIAISQSGETADTLAALNLARKHGCLCIGICNTVGSTLARST 369
                 5666677899*******************************9999988887655 PP

>> TIGR03442  TIGR03442: TIGR03442 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   5.6e-05     0.021      86     152 ..      75     136 ..      69     153 .. 0.74

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 5.6e-05
   TIGR03442  86 laavRsAtvgqavelsataPF..adgrillsHnGvvdnfretlyrplrdrlddeeylaiegstDsellf 152
                 +a  R At g + ++  + P   +dg  +++HnG+v+nf  +l    r++l ++ y+ + + tD el++
  MMETSP1137-20121227|7135_1  75 IAHTRWATHGPPTDVN-AHPHtsTDGGLAVVHNGIVENFG-AL----RQQLMSKGYK-MXSDTDTELIA 136
                 7899********9975.556522578899********994.45....5555555665.45777777775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (591 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       140  (0.0341297); expected 82.0 (0.02)
Passed bias filter:                      112  (0.0273038); expected 82.0 (0.02)
Passed Vit filter:                        18  (0.0043881); expected 4.1 (0.001)
Passed Fwd filter:                        11  (0.00268162); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.56u 0.13s 00:00:00.69 Elapsed: 00:00:01.26
# Mc/sec: 619.09
//
Query:       MMETSP1137-20121227|7136_1  [L=212]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0018   16.5   0.9      0.011   13.9   0.1    2.2  2  TIGR02096 TIGR02096: conserved hypothetical protein
  ------ inclusion threshold ------
      0.015   13.4   0.9        1.2    7.3   0.1    3.1  2  TIGR01801 CM_A: chorismate mutase


Domain annotation for each model (and alignments):
>> TIGR02096  TIGR02096: conserved hypothetical protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.0     0.056   1.1e+02      41      75 ..      11      44 ..       4      57 .. 0.83
   2 !   13.9   0.1   5.2e-06     0.011      20      88 ..      58     126 ..      45     129 .. 0.91

  Alignments for each domain:
  == domain 1    score: 0.9 bits;  conditional E-value: 0.056
   TIGR02096 41 kdqlarflaelanalpdnevdvvrftaeegsavva 75
                k+ql ++ a+++ + +    ++ +++ ee  +v +
  MMETSP1137-20121227|7136_1 11 KEQLKKWKADMRAESRKIDRQILKIQREEQ-KVKL 44
                89**************99999999999998.6654 PP

  == domain 2    score: 13.9 bits;  conditional E-value: 5.2e-06
   TIGR02096  20 lallaeDvlyddeagsrklktkdqlarflaelanalpdnevdvvrftaeegsavvaewtvtGtyleafe 88 
                  ++la++++   +a sr  ++k+++ +++++++n++  ++v  +    +e+ +++   +  G++ e+++
  MMETSP1137-20121227|7136_1  58 CKMLAKEIVRSRKAVSRLHTSKAHMNSVVMQMQNQYSQQKVMGHMSKSTEVMRAMNSLVKVGEISETMQ 126
                 4789*******************************************************9***999986 PP

>> TIGR01801  CM_A: chorismate mutase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   0.1    0.0006       1.2      45      93 ..      32      80 ..      18      89 .. 0.78
   2 ?    3.1   0.0     0.012        24      68      91 ..     122     145 ..     101     152 .. 0.81

  Alignments for each domain:
  == domain 1    score: 7.3 bits;  conditional E-value: 0.0006
   TIGR01801 45 rydParekemlneliesnkGPfedatikqifkeifkaslelqesedkka 93
                +   +re+++++  i++     ++ t k + kei ++  ++ + + +ka
  MMETSP1137-20121227|7136_1 32 ILKIQREEQKVKLSIKQAAKRGDTGTCKMLAKEIVRSRKAVSRLHTSKA 80
                4556899999999999999999999999999999998888777776665 PP

  == domain 2    score: 3.1 bits;  conditional E-value: 0.012
   TIGR01801  68 datikqifkeifkaslelqesedk 91 
                 ++t++q+ ke++ka++  +  +d+
  MMETSP1137-20121227|7136_1 122 SETMQQMQKEMLKAGVIEEMVDDS 145
                 4799**********9876666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (212 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       817  (0.199171); expected 82.0 (0.02)
Passed bias filter:                      167  (0.0407118); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.27u 0.15s 00:00:00.42 Elapsed: 00:00:00.42
# Mc/sec: 666.23
//
Query:       MMETSP1137-20121227|7138_1  [L=90]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (90 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        32  (0.00780107); expected 82.0 (0.02)
Passed bias filter:                       32  (0.00780107); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.12s 00:00:00.25 Elapsed: 00:00:00.31
# Mc/sec: 383.19
//
Query:       MMETSP1137-20121227|7139_1  [L=366]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (366 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        62  (0.0151146); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.14s 00:00:00.40 Elapsed: 00:00:00.39
# Mc/sec: 1238.67
//
Query:       MMETSP1137-20121227|7141_1  [L=45]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (45 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        18  (0.0043881); expected 82.0 (0.02)
Passed bias filter:                       18  (0.0043881); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.12s 00:00:00.22 Elapsed: 00:00:00.23
# Mc/sec: 258.24
//
Query:       MMETSP1137-20121227|7142_1  [L=196]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (196 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       143  (0.034861); expected 82.0 (0.02)
Passed bias filter:                      130  (0.0316919); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.17s 00:00:00.37 Elapsed: 00:00:00.49
# Mc/sec: 527.96
//
Query:       MMETSP1137-20121227|7143_1  [L=66]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (66 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        70  (0.0170648); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.15s 00:00:00.27 Elapsed: 00:00:00.24
# Mc/sec: 362.97
//
Query:       MMETSP1137-20121227|7145_1  [L=250]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (250 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        47  (0.0114578); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.18s 00:00:00.39 Elapsed: 00:00:00.30
# Mc/sec: 1099.91
//
Query:       MMETSP1137-20121227|7146_1  [L=99]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (99 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       109  (0.0265724); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.16s 00:00:00.31 Elapsed: 00:00:00.28
# Mc/sec: 450.58
//
Query:       MMETSP1137-20121227|7147_1  [L=272]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.7e-62  207.2   0.1    1.3e-61  206.8   0.1    1.1  1  TIGR02279 PaaC-3OHAcCoADH: 3-hydroxyacyl-CoA dehydrogenase PaaC
    1.8e-48  163.2   0.0    2.1e-48  162.9   0.0    1.0  1  TIGR02440 FadJ: fatty oxidation complex, alpha subunit FadJ
    1.8e-48  163.2   0.0    2.1e-48  163.0   0.0    1.0  1  TIGR02437 FadB: fatty oxidation complex, alpha subunit FadB
    3.1e-47  158.9   0.1    3.6e-47  158.7   0.1    1.1  1  TIGR02441 fa_ox_alpha_mit: fatty acid oxidation complex, alpha subunit, mitochondrial


Domain annotation for each model (and alignments):
>> TIGR02279  PaaC-3OHAcCoADH: 3-hydroxyacyl-CoA dehydrogenase PaaC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  206.8   0.1   1.2e-64   1.3e-61      14     287 ..       1     267 [.       1     271 [. 0.94

  Alignments for each domain:
  == domain 1    score: 206.8 bits;  conditional E-value: 1.2e-64
   TIGR02279  14 GamGaGiaqvaaraGhtvllydiraealaravagiekdlkslvekgkldaaeaeatlkrlvPvaalealadaglvieaivenlevkkalfaqleelltadaiiasntsslsitalaaglarPervaGlhffnPaPlmalvevvsGlateaevaetlyetarawGkqPvrarstPGfivnrvarPyyaealrvleeqaaepasldallrdgaGfamGpleltdliGhdvnfavtcsvfeafyqdrrfaPslvqkelvaaGrlGrksGrGvyeyae 287
                 G mG Giaqvaa++G +v   ++    l  +++ ie ++++l +k+  +++ +e   k +  +   ++la  +lviea++e+l +kk l+ ++ + ++  +iiasntsslsi+ +a    rP+++ GlhffnP  lm+lvevv    t+a++ e+ +  a+a Gk+P+r+  t Gf+vnr+  Py  ea+ ++e ++a p  +d +++ gaG +mGp++l d iG d    +  s +e f       P  +  + v+ G+lGrksG+G+y +  
  MMETSP1137-20121227|7147_1   1 GLMGHGIAQVAAEKGFQVVAVESENRFLDSGMKRIETSVQKLGAKAVKKGTMSESEAKDISTLRLAADLAXCDLVIEAVIEDLALKKPLYEEIGATVSDRCIIASNTSSLSIAKMAEFCGRPKQMLGLHFFNPVQLMQLVEVVRTEQTDAALFESAFGFAHALGKKPIRCVDTEGFVVNRLLVPYLIEAIALVERGVASPSDVDLAMKLGAGHPMGPIQLADYIGLDTVRNI-ISGWEGFQ-----VPETLEAK-VVEGKLGRKSGEGFYRWDG 267
                 78*********************************************9*******9**99999999*****************************************************************************************************************************************************************75544.35555543.....46666555.6679************975 PP

>> TIGR02440  FadJ: fatty oxidation complex, alpha subunit FadJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  162.9   0.0   2.1e-51   2.1e-48     313     581 ..       1     265 [.       1     270 [. 0.89

  Alignments for each domain:
  == domain 1    score: 162.9 bits;  conditional E-value: 2.1e-51
   TIGR02440 313 glmgggiasvtatkaglpvrikdin...eqgiknalkyaydlldkkvkrrrlkkaerdkklalisgttdyrgfkevdivveavfedlelkqqmvkdieretaehtifasntsslpigqiaaaaerpeqviglhyfspvekmplveviphaktseetiattvalakkqgktpivvadkagfyvnrilapyineaarllleges.vehidkal.vdfgfpvgpitlldevgidvgakispileaelgerfkapavfdkllsddrkgrkngkgfyly 581
                 glmg gia+v+a k    v +   n   + g+k+  +   +l  k vk+ +++++e +     is+      ++  d+v+eav+edl+lk+ + ++i  + ++  i+asntssl i+++a+   rp+q++glh+f pv+ m lvev+  ++t +    ++  +a+  gk pi   d  gf vnr+l py+ ea++l+  g +   ++d a+ +  g p+gpi+l d +g+d+   i+        e f+ p++++  + +++ grk+g gfy +
  MMETSP1137-20121227|7147_1   1 GLMGHGIAQVAAEKGFQVVAVESENrflDSGMKRIETSVQKLGAKAVKKGTMSESEAKD----ISTLRLAADLAXCDLVIEAVIEDLALKKPLYEEIGATVSDRCIIASNTSSLSIAKMAEFCGRPKQMLGLHFFNPVQLMQLVEVVRTEQTDAALFESAFGFAHALGKKPIRCVDTEGFVVNRLLVPYLIEAIALVERGVAsPSDVDLAMkLGAGHPMGPIQLADYIGLDTVRNIISG-----WEGFQVPETLEAKVVEGKLGRKSGEGFYRW 265
                 8*************998888887663335788877666666667888888898887653....444445556899***************************************************************************************************************************997515789998757899****************9998753.....478*************************98 PP

>> TIGR02437  FadB: fatty oxidation complex, alpha subunit FadB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  163.0   0.0   2.1e-51   2.1e-48     322     596 ..       1     269 [.       1     272 [] 0.90

  Alignments for each domain:
  == domain 1    score: 163.0 bits;  conditional E-value: 2.1e-51
   TIGR02437 322 GimGGGiayqsaskGvpvvmkdiaeksldlGl....teaakllnkqlerGkidglklaevlnsitptleyadvdnvdivveavvenpkvkkavlaeveekvredavlasntstisisllakalkrpenfvGmhffnpvhrmplvevirGekssdetiakvvayaskmGktpivvndcpGflvnrvlfpyfaGfskllrdGad.fakidkvmekkfGwpmGpaylldvvGidtahhaqavmaeGfpdrmkkdrrdaidalfeakrlGqknGkGfyayevdk 596
                 G+mG Gia  +a kG  vv  + +++ ld G+    t   kl +k +++G ++    a+ +++++ +   ad+   d+v+eav+e+  +kk +  e+  +v++ +++asnts++si+++a+   rp+++ G+hffnpv  m lvev+r e++      +   +a+ +Gk+pi   d  Gf+vnr+l py+     l++ G+   + +d  m+   G pmGp  l d +G+dt     +   eGf      +  ++++a     +lG+k G+Gfy+++ dk
  MMETSP1137-20121227|7147_1   1 GLMGHGIAQVAAEKGFQVVAVESENRFLDSGMkrieTSVQKLGAKAVKKGTMSESE-AKDISTLRLA---ADLAXCDLVIEAVIEDLALKKPLYEEIGATVSDRCIIASNTSSLSIAKMAEFCGRPKQMLGLHFFNPVQLMQLVEVVRTEQTDAALFESAFGFAHALGKKPIRCVDTEGFVVNRLLVPYLIEAIALVERGVAsPSDVDLAMKLGAGHPMGPIQLADYIGLDTVRNIIS-GWEGF------QVPETLEAKVVEGKLGRKSGEGFYRWDGDK 269
                 89******************************43333457999999****998765.6667888765...678899*************************************************************************************************************************999751689**************************865432.23555......5667788888899*************9997 PP

>> TIGR02441  fa_ox_alpha_mit: fatty acid oxidation complex, alpha subunit, mitochondrial
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  158.7   0.1   3.5e-50   3.6e-47     344     617 ..       1     269 [.       1     272 [] 0.89

  Alignments for each domain:
  == domain 1    score: 158.7 bits;  conditional E-value: 3.5e-50
   TIGR02441 344 GlmGaGiaqvsvdkGlktvlkdateagldrGqqqvakgln....kkvkkkkltslerdsilsnltatldysafkkadvvieavfedlklkhkvlkeveavvpehciiasntsalpikeiaavssrpekviGmhyfspvdkmqlleiittdktskdtlasavavGlkqGkvvivvkdgpGfyttrilgpmlaevirllqeGv.dpkeldk.lttkfGfpvGaatlvdevGvdvaehvaedlgkalGerlgGGslellkelvkkGflGrksGkGifiydegk 617
                 GlmG Giaqv+ +kG+++v  ++++  ld G++++ + ++    k+vkk ++++ e + i s l+      ++   d+vieav+edl lk+ +  e+ a v+++ciiasnts+l i ++a    rp++++G+h+f pv+ mql+e++ t++t      sa       Gk  i   d+ Gf + r+l p l e+i l++ Gv  p ++d  +    G p+G   l+d +G+d  + +            g    e l+  v +G lGrksG G++ +d++k
  MMETSP1137-20121227|7147_1   1 GLMGHGIAQVAAEKGFQVVAVESENRFLDSGMKRIETSVQklgaKAVKKGTMSESEAKDI-STLRLAA---DLAXCDLVIEAVIEDLALKKPLYEEIGATVSDRCIIASNTSSLSIAKMAEFCGRPKQMLGLHFFNPVQLMQLVEVVRTEQTDAALFESAFGFAHALGKKPIRCVDTEGFVVNRLLVPYLIEAIALVERGVaSPSDVDLaMKLGAGHPMGPIQLADYIGLDTVRNIISGW-------EGFQVPETLEAKVVEGKLGRKSGEGFYRWDGDK 269
                 8************************99999999887766522226788888888887665.5555554...57889****************************************************************************************************************************95599**961445689***************988876543.......233467999******************998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (272 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       136  (0.0331546); expected 82.0 (0.02)
Passed bias filter:                      127  (0.0309605); expected 82.0 (0.02)
Passed Vit filter:                        21  (0.00511945); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.31u 0.18s 00:00:00.49 Elapsed: 00:00:00.47
# Mc/sec: 763.85
//
Query:       MMETSP1137-20121227|7148_1  [L=249]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (249 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        99  (0.0241346); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.14s 00:00:00.36 Elapsed: 00:00:00.46
# Mc/sec: 714.46
//
Query:       MMETSP1137-20121227|7149_1  [L=270]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   1.8e-130  433.8   6.3     2e-130  433.7   4.3    1.0  1  TIGR00962 atpA: ATP synthase F1, alpha subunit
   1.7e-100  334.9   5.8   1.8e-100  334.8   4.0    1.0  1  TIGR03324 alt_F1F0_F1_al: alternate F1F0 ATPase, F1 subunit alpha
    6.4e-34  115.3   1.5    7.5e-34  115.1   1.0    1.0  1  TIGR03496 FliI_clade1: flagellar protein export ATPase FliI
    4.1e-33  112.5   1.5    4.7e-33  112.3   1.0    1.0  1  TIGR02546 III_secr_ATP: type III secretion apparatus H+-transporting two-sector ATPase
    3.9e-31  106.0   0.9    4.8e-31  105.7   0.6    1.0  1  TIGR03498 FliI_clade3: flagellar protein export ATPase FliI
    3.9e-30  102.9   1.5    4.4e-30  102.8   1.1    1.1  1  TIGR03497 FliI_clade2: flagellar protein export ATPase FliI
    3.1e-29   99.8   2.0    3.4e-29   99.7   1.4    1.0  1  TIGR01026 fliI_yscN: ATPase FliI/YscN family
    1.8e-26   90.5   1.0    2.1e-26   90.2   0.7    1.1  1  TIGR01041 ATP_syn_B_arch: ATP synthase archaeal, B subunit
    2.5e-22   77.1   1.2    2.9e-22   76.9   0.9    1.0  1  TIGR01039 atpD: ATP synthase F1, beta subunit
    3.1e-22   76.7   0.2    3.6e-22   76.5   0.2    1.0  1  TIGR03305 alt_F1F0_F1_bet: alternate F1F0 ATPase, F1 subunit beta
    2.6e-20   70.2   2.1    2.3e-19   67.1   1.4    1.9  1  TIGR01040 V-ATPase_V1_B: V-type ATPase, B subunit
    7.7e-11   38.9   0.7    7.7e-11   38.9   0.5    1.6  2  TIGR01043 ATP_syn_A_arch: ATP synthase archaeal, A subunit
    9.4e-09   32.2   0.2    9.4e-09   32.2   0.1    1.4  2  TIGR01042 V-ATPase_V1_A: V-type ATPase, A subunit
    1.1e-05   22.3   0.0    1.6e-05   21.8   0.0    1.1  1  TIGR00767 rho: transcription termination factor Rho
     0.0094   13.5   0.3      0.014   12.9   0.2    1.4  1  TIGR03881 KaiC_arch_4: KaiC domain protein, PAE1156 family


Domain annotation for each model (and alignments):
>> TIGR00962  atpA: ATP synthase F1, alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  433.7   4.3  7.4e-133    2e-130      12     282 ..       2     270 .]       1     270 [] 1.00

  Alignments for each domain:
  == domain 1    score: 433.7 bits;  conditional E-value: 7.4e-133
   TIGR00962  12 kkeikkfekeieaeevGtvvsvadGiakveGlenvlskeliefeggvkgialnleedsvGvvilGdyseikeGsevkrtgevlevpvGdallGrvvnalGepidGkGdieseefsavekkaPgvierksvkePlqtGikaidaliPiGrGqreliiGdrqtGktavaidtiinqkdskkdvkcvyvaiGqkestvaqvvekleekgaleytivvaasasdsaslqylaPyagvalaeyfrdkgkdaliiyddlskqavayrqlslllrrPP 282
                 +++i+++++e++ ++vGtv++v+dGia+v+Gle+v+++el+ef++g+ gialnle+d+vG+v++G+  +i eG  v+ tg++ ++pvGd++lGrvvnal  pidGkGdi  ++ + ve++  g+i+rksv+eP+qtGi+aida+iPiGrGqreliiGdrqtGkt+vaidtiinqk+  +dv+cvyva+Gqk+s+va++v++l+ekgal+ytivvaa+a d+a+lqy+aPy+g+alaeyf++kgk +liiyddlskqa ayrq+slllrrPP
  MMETSP1137-20121227|7149_1   2 RQQIESYDQEVQIANVGTVLQVGDGIARVYGLEQVMAGELLEFQDGTVGIALNLENDNVGAVLMGTGLDILEGGPVRSTGKIAQIPVGDKFLGRVVNALAVPIDGKGDIVPDDSRLVEANGAGIITRKSVCEPVQTGITAIDAMIPIGRGQRELIIGDRQTGKTSVAIDTIINQKS--EDVICVYVAVGQKASSVASIVSTLDEKGALDYTIVVAANADDPATLQYIAPYTGAALAEYFMYKGKATLIIYDDLSKQASAYRQMSLLLRRPP 270
                 79******************************************************************************************************************************************************************************..89******************************************************************************************9 PP

>> TIGR03324  alt_F1F0_F1_al: alternate F1F0 ATPase, F1 subunit alpha
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  334.8   4.0  6.7e-103  1.8e-100      14     281 ..       3     270 .]       1     270 [] 0.99

  Alignments for each domain:
  == domain 1    score: 334.8 bits;  conditional E-value: 6.7e-103
   TIGR03324  14 earesaapelalkevGtvesvskGiakvsGlpgvgveellkfpGdllGiafnvdedevGvvllgeysklqaGdevertgrvldvpvGdellGrvvdplGrpldgkkelasskrlpierpapeimdrapvtvplqtGlkvvdalipiGrGqrelilGdrqtGktaiaidtilnqkdknvlcvycaiGqrasavakvvaelrekgaldytivvvtegndppGlqyiapyaatsiaeyfmeqGrdvlivyddltkharayrelslllrrpp 281
                 +  es   e+++ +vGtv +v  Gia+v Gl +v   ell+f  +++Gia+n+++d+vG+vl+g   ++  G+ v+ tg++ ++pvGd++lGrvv+ l  p+dgk+++   +   +e + + i++r++v++p+qtG+  +da+ipiGrGqreli+GdrqtGkt++aidti+nqk ++v+cvy a+Gq+as+va +v++l ekgaldytivv ++ +dp+ lqyiapy+ +++aeyfm +G+  li+yddl+k a ayr++slllrrpp
  MMETSP1137-20121227|7149_1   3 QQIESYDQEVQIANVGTVLQVGDGIARVYGLEQVMAGELLEFQDGTVGIALNLENDNVGAVLMGTGLDILEGGPVRSTGKIAQIPVGDKFLGRVVNALAVPIDGKGDIVPDDSRLVEANGAGIITRKSVCEPVQTGITAIDAMIPIGRGQRELIIGDRQTGKTSVAIDTIINQKSEDVICVYVAVGQKASSVASIVSTLDEKGALDYTIVVAANADDPATLQYIAPYTGAALAEYFMYKGKATLIIYDDLSKQASAYRQMSLLLRRPP 270
                 5667888999*****************************************************************************************************************************************************************************************************************************************************************9 PP

>> TIGR03496  FliI_clade1: flagellar protein export ATPase FliI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  115.1   1.0   2.7e-36   7.5e-34       5     254 ..      22     270 .]      10     270 .] 0.85

  Alignments for each domain:
  == domain 1    score: 115.1 bits;  conditional E-value: 2.7e-36
   TIGR03496   5 kvaglvleavgl.kasvgelveieeeegesveaevvgfeeeklllmpleeveglalgakvvlleeekklpvgeellGrvidalgepldgkgaleaeeevsleaepinplkrerieevldvGvrainalltvgkGqrlglfagsGvGK.svLlgmlarateadvvvvaL.iGERgREvkefieknLgeeglkrsvvvaatadespllrlraaalataiaeyfrdqgkdvLllmDSltRfAmAqReialaiGEpp 254
                 +v   + ++ gl ++  gel+e+  ++g  + +  +++e++++  + + +  ++  g  v+++ + +++pvg+++lGrv++al+ p+dgkg +  ++++ +ea+    ++r+ + e++++G+ ai+a++++g+Gqr  ++     GK sv +  ++ +++ dv+ v + +G ++  v  ++ +  ++ +l+ ++vvaa ad+++ l+  a ++  a+aeyf  +gk  L++ D l++ A A R+++l +  pp
  MMETSP1137-20121227|7149_1  22 QVGDGIARVYGLeQVMAGELLEF--QDG--TVGIALNLENDNVGAVLMGTGLDILEGGPVRSTGKIAQIPVGDKFLGRVVNALAVPIDGKGDIVPDDSRLVEANGAGIITRKSVCEPVQTGITAIDAMIPIGRGQRELIIGDRQTGKtSVAIDTIINQKSEDVICVYVaVGQKASSVASIVSTLDEKGALDYTIVVAANADDPATLQYIAPYTGAALAEYFMYKGKATLIIYDDLSKQASAYRQMSLLLRRPP 270
                 44444444444422333333333..222..245556777777777777888888888889999999*********************************************************************************7799***********99775439********9998766667799********************************************************988877 PP

>> TIGR02546  III_secr_ATP: type III secretion apparatus H+-transporting two-sector ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  112.3   1.0   1.7e-35   4.7e-33       5     258 ..      16     265 ..      12     270 .] 0.89

  Alignments for each domain:
  == domain 1    score: 112.3 bits;  conditional E-value: 1.7e-35
   TIGR02546   5 vlgrvtevsgtllkavlp.earvgelclikekekeseleaevvgfeedealLsplgelsglslgseviplgrplsikvgeelLGrvldglGrpldgkkelkakeikkrpldaepPdplsRqkieqplalGvraiDglltvgeGqRiGifaeaGvGkstL.lsmiargakadv.ivlaLiGeRGRevrefiekelgeekrkrsvlvvstsdrsslerlkaayvataiaeyfRdqgkkvllllDsltRfaralreigLa 258
                  +g v +v   + ++  + +++ gel + ++      +    + +e+d++  + +g+  ++ +g  v ++g+  +i vg++ LGrv+++l  p+dgk+++  ++   r + a+    ++R+ + +p+++G+ aiD+++ +g+GqR  i ++  +Gk+++ + +i+++++ dv +v + +G +   v   + +  ++ + + +++v++ +d +++ +  a y++ a+aeyf  +gk  l++ D l++ a a r+++L 
  MMETSP1137-20121227|7149_1  16 NVGTVLQVGDGIARVYGLeQVMAGELLEFQD-----GTVGIALNLENDNVGAVLMGTGLDILEGGPVRSTGKIAQIPVGDKFLGRVVNALAVPIDGKGDIVPDDS--RLVEANGAGIITRKSVCEPVQTGITAIDAMIPIGRGQRELIIGDRQTGKTSVaIDTIINQKSEDViCVYVAVGQKASSVASIVSTLDEKGALDYTIVVAANADDPATLQYIAPYTGAALAEYFMYKGKATLIIYDDLSKQASAYRQMSLL 265
                 5678888888888887552577789988884.....3334456789999999999999***************************************99998864..589**********************************************8864789999999887257789*************99999999******************************************************9985 PP

>> TIGR03498  FliI_clade3: flagellar protein export ATPase FliI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  105.7   0.6   1.8e-33   4.8e-31       1     257 [.      18     270 .]      17     270 .] 0.90

  Alignments for each domain:
  == domain 1    score: 105.7 bits;  conditional E-value: 1.8e-33
   TIGR03498   1 GrvsevkgllvevaGlsaavrlGdlveieaeegkkvlaevvgleedevllmpfeslegvelgaavvveeealevrpeeswlGRvidalgepiDgkgalaegeaavpvkaeppaalsRkrveeklktGvrvidlfltlcrGqRlGifaGsGvGkstl.lsmlaraaaaDvv.vialvGeRGRevrefleddlgeeg.lkrsvvvvatsDesplmRrkaayvalaiaeyfRdqgkdvllllDsvtRfakaqReialaagepp 257
                 G+v +v + + +v Gl+++   G+l+e++  +    ++  ++le+d+v ++ + +  ++  g  v+++ + +++ + +++lGRv++al+ piDgkg +   ++ + v+a+ +  ++Rk v e+++tG+ +id++++++rGqR  i      Gk+++ +  ++++++ Dv+ v   vG +   v  ++  +l e+g l+ ++vv a +D+++ +++ a+y+  a+aeyf  +gk  l++ D + + a a R+++l    pp
  MMETSP1137-20121227|7149_1  18 GTVLQVGDGIARVYGLEQV-MAGELLEFQDGT----VGIALNLENDNVGAVLMGTGLDILEGGPVRSTGKIAQIPVGDKFLGRVVNALAVPIDGKGDIVPDDS-RLVEANGAGIITRKSVCEPVQTGITAIDAMIPIGRGQRELIIGDRQTGKTSVaIDTIINQKSEDVIcVYVAVGQKASSVASIVS-TLDEKGaLDYTIVVAANADDPATLQYIAPYTGAALAEYFMYKGKATLIIYDDLSKQASAYRQMSLLLRRPP 270
                 7889999999999999987.679999887655....677899999999999999999*****************************************98876.56799********************************************76537888888888986255679********9886.5666543899******************************************************9877776 PP

>> TIGR03497  FliI_clade2: flagellar protein export ATPase FliI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.8   1.1   1.6e-32   4.4e-30      39     254 ..      53     270 .]      18     270 .] 0.85

  Alignments for each domain:
  == domain 1    score: 102.8 bits;  conditional E-value: 1.6e-32
   TIGR03497  39 vgfkeekvlLmPleevegiapgslveatgkklavkvgkellGkvldglGepldekelvkkkeklpleaeppnplkrkrikdvlevgvkaidglltvGkGqrvGifagsGvGkstl.l.gmiarnakadinviaLvGerGrevrefiekdLgeeG.lkksvvvvatsdqpallrlkaalvataiaeyfrdqGkkvllmmDsvtrfamaqrevglavgepP 254
                 + +++++v  + ++   +i  g  v++tgk ++++vg+++lG+v+++l  p+d+k+ +   +++ +ea+    ++rk + +++++g+ aid+++ +G+Gqr  i      Gk+++ + ++i ++++  i v   vG++   v   + + L e+G l  ++vv+a +d+pa l+  a +++ a+aeyf  +Gk  l++ D + + a a r+++l  + pP
  MMETSP1137-20121227|7149_1  53 LNLENDNVGAVLMGTGLDILEGGPVRSTGKIAQIPVGDKFLGRVVNALAVPIDGKGDIVPDDSRLVEANGAGIITRKSVCEPVQTGITAIDAMIPIGRGQRELIIGDRQTGKTSVaIdTIINQKSEDVICVYVAVGQKASSVASIVST-LDEKGaLDYTIVVAANADDPATLQYIAPYTGAALAEYFMYKGKATLIIYDDLSKQASAYRQMSLLLRRPP 270
                 566777777777778889999******************************************************************************************97652425677777777899999********998765.6665538999*****************************************************9988887 PP

>> TIGR01026  fliI_yscN: ATPase FliI/YscN family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.7   1.4   1.3e-31   3.4e-29      45     280 ..      39     270 .]       2     270 .] 0.82

  Alignments for each domain:
  == domain 1    score: 99.7 bits;  conditional E-value: 1.3e-31
   TIGR01026  45 GevclierkgsekkevvaevvgfegekvllmpyeevegveagskvlaknealsvkvgegllGrvldalGkplDekgkaldnvekelitapinPlkrakieevlstGvrsidalltvgkGqrlGifaGsGvGkstL.lGmiarateadv.nvialiGerGrevkefiekdLgeeglkrsvvvvatsDespllrlkgayvataiaeyfrdqGkdvlllmDsvtrfakaqreigLaaGepP 280
                 Ge+ + +    +    v+  + +e+++v  + + +   + +g  v ++++  +++vg+++lGrv++al  p+D+kg ++   ++ +  +    ++r+ + e ++tG+ +ida++++g+Gqr  i      Gk ++ +  i  +++ dv  v   +G +   v   +     +  l  ++vv+a +D+++ l++ + y++ a+aeyf  +Gk  l+++D + + a a r ++L +  pP
  MMETSP1137-20121227|7149_1  39 GELLEFQ----DG--TVGIALNLENDNVGAVLMGTGLDILEGGPVRSTGKIAQIPVGDKFLGRVVNALAVPIDGKGDIVPDDSRLVEANGAGIITRKSVCEPVQTGITAIDAMIPIGRGQRELIIGDRQTGKTSVaIDTIINQKSEDViCVYVAVGQKASSVASIVSTLDEKGALDYTIVVAANADDPATLQYIAPYTGAALAEYFMYKGKATLIIYDDLSKQASAYRQMSLLLRRPP 270
                 5555444....22..4566777788888888888888899999*********************************777666666888888999**************************************6542666666555555167788*********99987777777999*******************************************************988777 PP

>> TIGR01041  ATP_syn_B_arch: ATP synthase archaeal, B subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.2   0.7   7.7e-29   2.1e-26      58     258 ..      69     263 ..      16     268 .. 0.85

  Alignments for each domain:
  == domain 1    score: 90.2 bits;  conditional E-value: 7.7e-29
   TIGR01041  58 tgldkeatkvrflGetlklkvsedllGrilngsGepidgGpeivpderrdinGaalnpaareypeefiqtGisaidGlntlvrGqklpifsgsGlphnelalqiarqakvrgeesefavvfaalGitaeeanffkkdfektGaleravvflnladdpaverivtprlaltvaeylafekdlhvlviltdltnycealreis 258
                  ++  e+  vr +G+ ++++v  ++lGr++n++  pidg  +ivpd+ r ++ +     +r+   e +qtGi+aid +  + rGq+  i+      + ++a+     + ++++ ++   v+ a+G +a  +    +++++ Gal+ ++v+ + addpa  + ++p +  ++aey+ ++ +   l+i  dl+  + a r++s
  MMETSP1137-20121227|7149_1  69 LDIL-EGGPVRSTGKIAQIPVGDKFLGRVVNALAVPIDGKGDIVPDDSRLVEANGAGIITRKSVCEPVQTGITAIDAMIPIGRGQRELIIGDRQTGKTSVAI----DTIINQKSEDVICVYVAVGQKASSVASIVSTLDEKGALDYTIVVAANADDPATLQYIAPYTGAALAEYFMYK-GKATLIIYDDLSKQASAYRQMS 263
                 2333.45669***************************************999999999*****************************999988887777766....466788889999**********************************************************96.66789***************98 PP

>> TIGR01039  atpD: ATP synthase F1, beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.9   0.9   1.1e-24   2.9e-22      40     264 ..      47     269 ..      14     270 .] 0.91

  Alignments for each domain:
  == domain 1    score: 76.9 bits;  conditional E-value: 1.1e-24
   TIGR01039  40 lvlevaqhlGddlvraialdstdGlvrglevkdtgkpievpvGkevlGrilnvlGepidekgevkkkeklsihrkapsfeeqstkveiletGikvidllapyakGGkiglfGGaGvGktvliqelinniakehsGlsvfaGvGertreGndlylelkesgvldkvalvyGqmneppGarlrvaltgltlaeyfrdeegqdvllfidnifrftqaGsevsallGrl 264
                  ++ +a +l +d v a+ +++   +  g  v +tgk  ++pvG++ lGr++n+l  pid kg++  +++  +  +   +  +++  e ++tGi  id + p+ +G +  + G    Gkt +  + i n  k+ + ++v++ vG+++     +   l e g ld++ +v  + ++p   +    +tg +laeyf  + +   l+  d++ + + a  ++s ll r 
  MMETSP1137-20121227|7149_1  47 GTVGIALNLENDNVGAVLMGTGLDILEGGPVRSTGKIAQIPVGDKFLGRVVNALAVPIDGKGDIVPDDSRLVEANGAGIITRKSVCEPVQTGITAIDAMIPIGRGQRELIIGDRQTGKTSVAIDTIINQ-KSEDVICVYVAVGQKASSVASIVSTLDEKGALDYTIVVAANADDPATLQYIAPYTGAALAEYFMYKGK-ATLIIYDDLSKQASAYRQMSLLLRRP 269
                 56788999**************************************************************************************************************97766666553.566889*******************************************9999**********97766.788889**************999885 PP

>> TIGR03305  alt_F1F0_F1_bet: alternate F1F0 ATPase, F1 subunit beta
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.5   0.2   1.3e-24   3.6e-22      33     254 ..      46     265 ..      23     270 .] 0.92

  Alignments for each domain:
  == domain 1    score: 76.5 bits;  conditional E-value: 1.3e-24
   TIGR03305  33 evvvevlaqldakkvrgialtateglargmavkdsgaplkapvgkeilsrvfdvfgntidrreslkdvkwrsvhqappaltrrssksevfetgikaidvlvplerggkaglfggagvgktvlltelihnlvsqeegvslfcgigercregeelyremkeagvldntvmvfgqmneppgarfrvglaaltmaeyfrddekkdvlllidnifrfiqagsevsgl 254
                 + +v ++++l++++v ++ + +   +  g +v+++g+  ++pvg + l+rv++ +  +id +      + r v  + + +  r s  e  +tgi aid ++p+ rg +  ++g    gkt +  + i n  + e+ + ++  +g++      +   + e g ld t++v  + ++p   ++   ++  ++aeyf     k  l++ d++ +   a  ++s l
  MMETSP1137-20121227|7149_1  46 DGTVGIALNLENDNVGAVLMGTGLDILEGGPVRSTGKIAQIPVGDKFLGRVVNALAVPIDGKGDIVPDDSRLVEANGAGIITRKSVCEPVQTGITAIDAMIPIGRGQRELIIGDRQTGKTSVAIDTIINQ-KSEDVICVYVAVGQKASSVASIVSTLDEKGALDYTIVVAANADDPATLQYIAPYTGAALAEYFMYK-GKATLIIYDDLSKQASAYRQMSLL 265
                 45788999**********99999999**********************************************************************************************9999988886.56789**********************************************************865.566788888887777777666665 PP

>> TIGR01040  V-ATPase_V1_B: V-type ATPase, B subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.1   1.4   8.6e-22   2.3e-19      50     267 ..      60     263 ..      40     268 .. 0.88

  Alignments for each domain:
  == domain 1    score: 67.1 bits;  conditional E-value: 8.6e-22
   TIGR01040  50 vvqvfegtsgidakk.ttveftgdilrlpvsedmlgrvfngsgkpidkgpkvlaedyldingqpinpkariypeemiqtgisaidvmnsiargqkiplfsaaglphneiaaqicrqaglvkksekdvkdekeenfaivfaamgvnletarffkqdfeengslervtlflnlandptieriitprlalttaeylayekekhvlviltdmssyadalrevs 267
                 v  v+ gt g+d  +   v  tg+i ++pv +++lgrv n    pid   +++++d + ++ +     +r    e +qtgi+aid+m  i rgq+  ++               rq+g  + + +++ ++k+e+   v+ a+g    +   + + ++e+g+l+ +++    a+dp+  + i+p    + aey+ y+ +k  l+i  d+s  a a r++s
  MMETSP1137-20121227|7149_1  60 VGAVLMGT-GLDILEgGPVRSTGKIAQIPVGDKFLGRVVNALAVPIDGKGDIVPDDSRLVEANGAGIITRKSVCEPVQTGITAIDAMIPIGRGQRELIIGD-------------RQTGKTSVAIDTIINQKSEDVICVYVAVGQKASSVASIVSTLDEKGALDYTIVVAANADDPATLQYIAPYTGAALAEYFMYK-GKATLIIYDDLSKQASAYRQMS 263
                 44555565.777655157999***********************************999988888889999999********************9877653.............777877777788999999***************************************************************7.7889***************998 PP

>> TIGR01043  ATP_syn_A_arch: ATP synthase archaeal, A subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.1      0.37     1e+02      17      91 ..      32     105 ..      14     121 .. 0.70
   2 !   38.9   0.5   2.8e-13   7.7e-11     202     342 ..     129     264 ..      76     270 .] 0.89

  Alignments for each domain:
  == domain 1    score: -1.1 bits;  conditional E-value: 0.37
   TIGR01043  17 glkgakmyevvkvgeekliGeiiriegdkaviqvyeetsGikpgepvestGaplsvelGpGllesiydGvqrpld 91 
                 gl++    e+++  +++ +G  +++e+d++   +      i  g pv stG+   + +G  +l+++ + +  p+d
  MMETSP1137-20121227|7149_1  32 GLEQVMAGELLEF-QDGTVGIALNLENDNVGAVLMGTGLDILEGGPVRSTGKIAQIPVGDKFLGRVVNALAVPID 105
                 4544444444444.3456777777777777766666777788899999999999999999999998888887776 PP

  == domain 2    score: 38.9 bits;  conditional E-value: 2.8e-13
   TIGR01043 202 lepeeplvtGqrildtlfpiakGGtaaipGpfGsGkt.vtqqs.lakwsdaeivvyiGcGerGnemtevleefpeledpktGkpllertvliantsnmpvaareasiytGitiaeyfrdmGydvalvadstsrwaealreisg 342
                 ++  ep+ tG+  +d++ pi +G    i G   +Gkt v+ +  + + s+  i vy+  G++   ++ +++ + e       k  l+ t+++a  ++ p + +  + ytG ++aeyf  +G  ++++ d  s+ a a r++s 
  MMETSP1137-20121227|7149_1 129 KSVCEPVQTGITAIDAMIPIGRGQRELIIGDRQTGKTsVAIDTiINQKSEDVICVYVAVGQKASSVASIVSTLDE-------KGALDYTIVVAANADDPATLQYIAPYTGAALAEYFMYKGKATLIIYDDLSKQASAYRQMSL 264
                 566789******************************944444426788999999*********999999987644.......5679******************************************************986 PP

>> TIGR01042  V-ATPase_V1_A: V-type ATPase, A subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.2       1.8     5e+02      33      89 ..      47     103 ..      17     108 .. 0.69
   2 !   32.2   0.1   3.4e-11   9.4e-09     203     346 ..     128     264 ..     119     270 .] 0.85

  Alignments for each domain:
  == domain 1    score: -3.2 bits;  conditional E-value: 1.8
   TIGR01042  33 elvgeiirlegdkatiqvyeetagltvgdpvlrtgkplsvelgpgilgnifdgiqrp 89 
                   vg  + le+d++   +      +  g pv+ tgk   + +g  +lg + + +  p
  MMETSP1137-20121227|7149_1  47 GTVGIALNLENDNVGAVLMGTGLDILEGGPVRSTGKIAQIPVGDKFLGRVVNALAVP 103
                 456666777777776666666566666788888888888888888888877776666 PP

  == domain 2    score: 32.2 bits;  conditional E-value: 3.4e-11
   TIGR01042 203 klaadtplltgqrvldalfpsvqggttaipgafgcgktvis..qslskysnsdvivyvgcgergnemaevlrdfpeltveldgreesimkrttlvantsnmpvaareasiytgitlaeyfrdmgynvsmladstsrwaealreisg 346
                 + +  +p+ tg   +da+ p  +g    i g    gkt ++    + + s+  + vyv  g++   +a ++  +          e+  +  t +va  ++ p + +  + ytg +laeyf  +g+   ++ d  s+ a a r++s 
  MMETSP1137-20121227|7149_1 128 RKSVCEPVQTGITAIDAMIPIGRGQRELIIGDRQTGKTSVAidTIINQKSEDVICVYVAVGQKASSVASIVSTLD---------EKGALDYTIVVAANADDPATLQYIAPYTGAALAEYFMYKGKATLIIYDDLSKQASAYRQMSL 264
                 556678*******************************9765214455666666679********99999876543.........34568899**************************************************9985 PP

>> TIGR00767  rho: transcription termination factor Rho
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.8   0.0   5.7e-08   1.6e-05     158     273 ..     141     261 ..     130     264 .. 0.76

  Alignments for each domain:
  == domain 1    score: 21.8 bits;  conditional E-value: 5.7e-08
   TIGR00767 158 vldliaPiGkGqralivaPPkaGktvllqeianaitrnnpevelivlliderPeevtdmqrsv..kge.....vvastfdepasrhvqvaelviekakrlvekkkdvvilldsitrlaraynt 273
                  +d ++PiG+Gqr li+   ++Gkt +   i   i +   +v  + + + ++   v+ +  ++  kg      vva++ d+pa+            a+  + k+k  +i+ d +++ a ay +
  MMETSP1137-20121227|7149_1 141 AIDAMIPIGRGQRELIIGDRQTGKTSVA--IDTIINQKSEDVICVYVAVGQKASSVASIVSTLdeKGAldytiVVAANADDPATLQYIAPYTGAALAEYFMYKGKATLIIYDDLSKQASAYRQ 261
                 5899*********************984..667788888999999999999999999888776333323334478888888877665555556667777777777777777777777777765 PP

>> TIGR03881  KaiC_arch_4: KaiC domain protein, PAE1156 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.9   0.2   5.2e-05     0.014       3      67 ..     135     197 ..     133     265 .. 0.81

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 5.2e-05
   TIGR03881   3 lstGveeldklleGGiPrGffvavvGePGvGktilclhfiakGlregdkviyvtteesresivrq 67 
                 ++tG+ ++d ++   i rG    ++G+  +Gkt +++  i++   e+  ++yv+  ++  s+ + 
  MMETSP1137-20121227|7149_1 135 VQTGITAIDAMIP--IGRGQRELIIGDRQTGKTSVAIDTIINQKSEDVICVYVAVGQKASSVASI 197
                 689********97..6699999********************************99988887654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (270 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       165  (0.0402243); expected 82.0 (0.02)
Passed bias filter:                      118  (0.0287665); expected 82.0 (0.02)
Passed Vit filter:                        25  (0.00609459); expected 4.1 (0.001)
Passed Fwd filter:                        15  (0.00365675); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.39u 0.14s 00:00:00.53 Elapsed: 00:00:00.53
# Mc/sec: 672.40
//
Query:       MMETSP1137-20121227|7151_1  [L=71]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (71 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       108  (0.0263286); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.28
# Mc/sec: 323.15
//
Query:       MMETSP1137-20121227|7152_1  [L=189]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (189 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       175  (0.0426621); expected 82.0 (0.02)
Passed bias filter:                      116  (0.0282789); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.16s 00:00:00.37 Elapsed: 00:00:00.28
# Mc/sec: 860.20
//
Query:       MMETSP1137-20121227|7153_1  [L=160]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.8e-19   65.1   0.1    1.3e-18   64.6   0.1    1.2  1  TIGR02381 cspD: cold shock domain protein CspD


Domain annotation for each model (and alignments):
>> TIGR02381  cspD: cold shock domain protein CspD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.6   0.1   3.1e-22   1.3e-18       2      64 ..      76     138 ..      75     141 .. 0.94

  Alignments for each domain:
  == domain 1    score: 64.6 bits;  conditional E-value: 3.1e-22
   TIGR02381   2 eiGivkWfnnakGfGfisaegkdeDifahystiqmDGYrtLkaGqkvqfevvqgekGahatki 64 
                 ++G+ kWf+ akGfGfis +g+d+D+f h s i   G+r+L  G   +f+++++++  +a  +
  MMETSP1137-20121227|7153_1  76 KKGTCKWFDTAKGFGFISIDGEDQDVFVHQSDIYARGFRSLAEGETLEFKMTTDPRSGKAKAV 138
                 68******************************************************9888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (160 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        84  (0.0204778); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.17u 0.12s 00:00:00.29 Elapsed: 00:00:00.30
# Mc/sec: 703.94
//
Query:       MMETSP1137-20121227|7154_1  [L=89]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (89 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        25  (0.00609459); expected 82.0 (0.02)
Passed bias filter:                       22  (0.00536324); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.16s 00:00:00.31 Elapsed: 00:00:00.27
# Mc/sec: 435.08
//
Query:       MMETSP1137-20121227|7156_1  [L=1336]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1336 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       159  (0.0387616); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.78u 0.18s 00:00:00.96 Elapsed: 00:00:00.67
# Mc/sec: 2631.90
//
Query:       MMETSP1137-20121227|7157_1  [L=38]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (38 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       106  (0.0258411); expected 82.0 (0.02)
Passed bias filter:                       99  (0.0241346); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.20s 00:00:00.31 Elapsed: 00:00:00.28
# Mc/sec: 172.95
//
Query:       MMETSP1137-20121227|7158_1  [L=284]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.5e-08   29.9   0.0    8.3e-08   29.5   0.0    1.1  1  TIGR01122 ilvE_I: branched-chain amino acid aminotransferase
    4.3e-07   27.2   0.0    5.7e-07   26.8   0.0    1.1  1  TIGR03461 pabC_Proteo: aminodeoxychorismate lyase
    8.8e-05   19.6   0.0     0.0002   18.4   0.0    1.5  2  TIGR01121 D_amino_aminoT: D-amino-acid transaminase


Domain annotation for each model (and alignments):
>> TIGR01122  ilvE_I: branched-chain amino acid aminotransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.5   0.0   6.1e-11   8.3e-08      16     181 ..     119     284 .]     109     284 .] 0.79

  Alignments for each domain:
  == domain 1    score: 29.5 bits;  conditional E-value: 6.1e-11
   TIGR01122  16 vlthalhYGtgvfeGiRaYetdkglaifrlkehveRlydsakilrleipysk......eelvevtkevlrknnlksaYiRplvyvGaedlglkpkvdlkveviiaawewgaylgeealekGikvkvssfrraa.vnsiptkakaagnYlnsllaksealraGydeailLdeeG 181
                 + +h +  G++vf+      +    +++rl+ h+ Rl dsa   rl++p+        e++++++  +  +++ k a +R  ++ G ++lg++p +++ ++  + +++   +       +Gi+  ++       + ++ +++k+++ Y+ ++l+ + a+ +G + +i +d++G
  MMETSP1137-20121227|7158_1 119 IDDHIIVRGHAVFDTASLCAG----RLYRLQIHLRRLIDSAAKARLKLPFGPdtnaniERMTQIICATCLASGQKGANVRYWLTAGPGNLGVTP-SGCVPSFYVLVFAALPFDK-SWSMSGIREATVPESEVPlKPKLLAELKSTN-YMLNALTAMAAQDRGGTFGIGIDSQG 284
                 567888888888888777776....89********************99965111111567888888888889999******************.8888888887776655544.3445799877776666551557889999998.99999************999999988 PP

>> TIGR03461  pabC_Proteo: aminodeoxychorismate lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.8   0.0   4.2e-10   5.7e-07       9     158 ..     116     275 ..     109     284 .] 0.74

  Alignments for each domain:
  == domain 1    score: 26.8 bits;  conditional E-value: 4.2e-10
   TIGR03461   9 sisvsdRalqyGDGlFtTakvkdgkvelleaHleRLqkaae..rLlik.....lvdweeleeelak..laaekeegvlKviisrgsggrGYsaeglseptriislsalpahysewqqkGielkv.skvrLgrnp.lLAGiKhlNRLEQvLikaeleksead 158
                 s++++d  +  G  +F Ta +++g++  l+ Hl+RL ++a+  rL+++     + ++e++++ + +  la+ ++ + ++  ++ g g+ G +++g+  + +++  +alp   ++w  +Gi+ ++  + ++  +p lLA +K +N +   L   + +++  +
  MMETSP1137-20121227|7158_1 116 SVPIDDHIIVRGHAVFDTASLCAGRLYRLQIHLRRLIDSAAkaRLKLPfgpdtNANIERMTQIICAtcLASGQKGANVRYWLTAGPGNLGVTPSGCVPSFYVLVFAALPFD-KSWSMSGIREATvPESEVPLKPkLLAELKSTNYMLNALTAMAAQDRGGT 275
                 6788888889999***********************99876125665422222346666666665511355666788999************************9999965.78******74431344455554389999999988777777666666555 PP

>> TIGR01121  D_amino_aminoT: D-amino-acid transaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.0   1.5e-07    0.0002      12      67 ..     113     168 ..     104     188 .. 0.86
   2 ?   -2.5   0.0      0.35   4.7e+02      15      29 ..     266     280 ..     252     281 .. 0.64

  Alignments for each domain:
  == domain 1    score: 18.4 bits;  conditional E-value: 1.5e-07
   TIGR01121  12 eeakvdledrGyqfGdGvyevirvynGklftleehidrlyasaakirldlpyskee 67 
                 e ++v ++d   + G  v++   +  G+l+ l+ h+ rl+ saak rl+lp+  + 
  MMETSP1137-20121227|7158_1 113 ELMSVPIDDHIIVRGHAVFDTASLCAGRLYRLQIHLRRLIDSAAKARLKLPFGPDT 168
                 45688999999999**************************************8664 PP

  == domain 2    score: -2.5 bits;  conditional E-value: 0.35
   TIGR01121  15 kvdledrGyqfGdGv 29 
                 ++  +drG  fG G+
  MMETSP1137-20121227|7158_1 266 AMAAQDRGGTFGIGI 280
                 455677777777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (284 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        64  (0.0156021); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.23u 0.18s 00:00:00.41 Elapsed: 00:00:00.27
# Mc/sec: 1388.33
//
Query:       MMETSP1137-20121227|7159_1  [L=151]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (151 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        51  (0.012433); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.12s 00:00:00.29 Elapsed: 00:00:00.28
# Mc/sec: 687.25
//
Query:       MMETSP1137-20121227|7161_1  [L=639]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (639 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       217  (0.052901); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.16s 00:00:00.60 Elapsed: 00:00:00.37
# Mc/sec: 2279.49
//
Query:       MMETSP1137-20121227|7163_1  [L=870]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.6e-75  252.7   0.0      3e-75  251.9   0.0    1.4  1  TIGR00955 3a01204: pigment precursor permease
      3e-61  205.2   0.1      3e-61  205.2   0.0    1.5  2  TIGR00956 3a01205: pleiotropic drug resistance family protein
    8.4e-29   98.7   0.0    1.3e-28   98.1   0.0    1.2  1  TIGR02857 CydD: thiol reductant ABC exporter, CydD subunit
    6.2e-24   82.5   0.0      9e-24   82.0   0.0    1.2  1  TIGR00972 3a0107s01c2: phosphate ABC transporter, ATP-binding protein
    1.6e-23   81.3   0.3    2.4e-23   80.7   0.2    1.1  1  TIGR01188 drrA: daunorubicin resistance ABC transporter, ATP-binding protein
    2.1e-23   80.9   0.1    3.4e-23   80.3   0.1    1.3  1  TIGR02673 FtsE: cell division ATP-binding protein FtsE
    3.8e-23   79.6   0.5    5.8e-23   79.0   0.4    1.2  1  TIGR01842 type_I_sec_PrtD: type I secretion system ATPase
      4e-23   79.8   0.0    6.7e-23   79.1   0.0    1.3  1  TIGR03608 L_ocin_972_ABC: putative bacteriocin export ABC transporter, lactococcin 972 group
    2.6e-22   77.3   0.1    4.4e-22   76.5   0.1    1.2  1  TIGR03864 PQQ_ABC_ATP: ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system
    4.3e-21   72.7   0.3    4.3e-21   72.7   0.2    2.2  3  TIGR03375 type_I_sec_LssB: type I secretion system ATPase
    5.2e-21   73.0   0.0    8.1e-21   72.4   0.0    1.2  1  TIGR02315 ABC_phnC: phosphonate ABC transporter, ATP-binding protein
    5.9e-21   73.0   0.2    9.1e-21   72.4   0.1    1.2  1  TIGR00960 3a0501s02: type II secretory pathway family protein
    9.2e-21   72.3   0.1    1.5e-20   71.6   0.0    1.2  1  TIGR02982 heterocyst_DevA: ABC exporter ATP-binding subunit, DevA family
    1.8e-20   71.3   0.1    2.6e-20   70.8   0.1    1.1  1  TIGR02142 modC_ABC: molybdate ABC transporter, ATP-binding protein
    2.2e-20   70.8   0.0    3.6e-20   70.1   0.0    1.2  1  TIGR03873 F420-0_ABC_ATP: proposed F420-0 ABC transporter, ATP-binding protein
    2.2e-20   71.0   0.1    3.4e-20   70.4   0.0    1.2  1  TIGR03265 PhnT2: putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein
    3.5e-20   70.3   0.3    5.8e-20   69.6   0.2    1.2  1  TIGR03410 urea_trans_UrtE: urea ABC transporter, ATP-binding protein UrtE
    5.5e-20   69.5   0.1      8e-20   69.0   0.1    1.2  1  TIGR01187 potA: polyamine ABC transporter, ATP-binding protein
    6.5e-20   69.2   0.4    1.1e-19   68.4   0.3    1.3  1  TIGR01166 cbiO: cobalt ABC transporter, ATP-binding protein
    3.5e-19   66.6   1.6    1.4e-18   64.7   1.1    1.8  1  TIGR02868 CydC: thiol reductant ABC exporter, CydC subunit
    6.2e-19   66.3   0.1      1e-18   65.6   0.0    1.2  1  TIGR00968 3a0106s01: sulfate ABC transporter, ATP-binding protein
    3.4e-18   63.0   0.1    3.4e-18   63.0   0.0    1.5  2  TIGR03796 NHLM_micro_ABC1: NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein
    3.6e-18   63.6   0.1    5.3e-18   63.0   0.1    1.2  1  TIGR03258 PhnT: 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT
    8.3e-17   59.5   0.1    1.3e-16   58.8   0.1    1.2  1  TIGR03411 urea_trans_UrtD: urea ABC transporter, ATP-binding protein UrtD
    1.7e-16   57.6   0.1    2.8e-16   56.9   0.1    1.3  1  TIGR02203 MsbA_lipidA: lipid A export permease/ATP-binding protein MsbA
    1.9e-16   57.8   0.1    3.1e-16   57.1   0.0    1.3  1  TIGR02314 ABC_MetN: D-methionine ABC transporter, ATP-binding protein
      2e-16   58.1   0.1    3.3e-16   57.4   0.1    1.2  1  TIGR01277 thiQ: thiamine ABC transporter, ATP-binding protein
    3.3e-16   57.3   0.1    5.6e-16   56.5   0.0    1.3  1  TIGR01978 sufC: FeS assembly ATPase SufC
    5.7e-16   56.6   0.1    8.2e-16   56.1   0.0    1.2  1  TIGR01184 ntrCD: nitrate ABC transporter, ATP-binding proteins C and D
    5.9e-16   56.7   0.2      1e-15   55.9   0.1    1.3  1  TIGR03771 anch_rpt_ABC: anchored repeat-type ABC transporter, ATP-binding subunit
    1.4e-15   54.8   0.0    2.6e-15   53.9   0.0    1.3  1  TIGR02204 MsbA_rel: ABC transporter, permease/ATP-binding protein
    3.1e-15   54.1   0.1    5.6e-15   53.3   0.1    1.3  1  TIGR02211 LolD_lipo_ex: lipoprotein releasing system, ATP-binding protein
    5.1e-15   53.6   0.5    8.4e-15   52.9   0.4    1.2  1  TIGR03740 galliderm_ABC: lantibiotic protection ABC transporter, ATP-binding subunit
    6.1e-15   52.3   0.1    9.2e-15   51.7   0.0    1.2  1  TIGR00958 3a01208: antigen peptide transporter 2
    6.6e-15   53.2   0.1      1e-14   52.6   0.1    1.1  1  TIGR03522 GldA_ABC_ATP: gliding motility-associated ABC transporter ATP-binding subunit GldA
    7.4e-15   52.3   1.1      9e-15   52.0   0.1    1.5  2  TIGR03797 NHLM_micro_ABC2: NHLM bacteriocin system ABC transporter, ATP-binding protein
    7.5e-15   53.0   0.0    1.2e-14   52.3   0.0    1.2  1  TIGR01189 ccmA: heme ABC exporter, ATP-binding protein CcmA
    1.4e-13   47.9   0.0    2.6e-13   47.0   0.0    1.4  1  TIGR01846 type_I_sec_HlyB: type I secretion system ATPase
    1.6e-13   46.2   0.0    2.3e-13   45.8   0.0    1.1  1  TIGR01257 rim_protein: rim ABC transporter
    2.7e-13   47.7   0.0    4.3e-13   47.0   0.0    1.2  1  TIGR02770 nickel_nikD: nickel import ATP-binding protein NikD
      3e-13   47.4   0.3    3.7e-12   43.8   0.2    2.0  1  TIGR03005 ectoine_ehuA: ectoine/hydroxyectoine ABC transporter, ATP-binding protein EhuA
    8.6e-13   45.5   0.0    1.4e-12   44.8   0.0    1.2  1  TIGR01193 bacteriocin_ABC: ABC-type bacteriocin transporter
    9.1e-13   46.1   0.0    1.8e-12   45.1   0.0    1.4  1  TIGR02769 nickel_nikE: nickel import ATP-binding protein NikE
    5.7e-12   43.4   0.3    4.2e-11   40.6   0.2    2.1  1  TIGR02324 CP_lyasePhnL: phosphonate C-P lyase system protein PhnL
    3.4e-11   40.5   0.1    5.9e-11   39.7   0.1    1.3  1  TIGR01288 nodI: nodulation ABC transporter NodI
      6e-11   39.9   0.0    9.3e-11   39.2   0.0    1.1  1  TIGR01186 proV: glycine betaine/L-proline transport ATP binding subunit
    9.1e-11   39.5   0.8    2.4e-07   28.3   0.0    2.2  2  TIGR02323 CP_lyasePhnK: phosphonate C-P lyase system protein PhnK
    2.2e-10   37.5   0.1    3.2e-07   27.1   0.0    2.1  2  TIGR03269 met_CoM_red_A2: methyl coenzyme M reductase system, component A2
    4.3e-10   36.5   1.3    2.9e-09   33.7   1.1    1.7  1  TIGR02633 xylG: D-xylose ABC transporter, ATP-binding protein
    6.6e-10   36.0   0.0      1e-09   35.4   0.0    1.2  1  TIGR01192 chvA: glucan exporter ATP-binding protein
    7.9e-10   35.7   0.1      4e-06   23.5   0.0    2.2  1  TIGR03719 ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family
    1.7e-09   34.2   0.5      3e-05   20.2   0.1    2.1  2  TIGR00630 uvra: excinuclease ABC subunit A
    4.4e-09   32.1   0.1    6.6e-09   31.6   0.0    1.1  1  TIGR00957 MRP_assoc_pro: multi drug resistance-associated protein (MRP)
    5.7e-08   29.9   0.5    2.2e-07   28.0   0.3    1.8  1  TIGR03415 ABC_choXWV_ATP: choline ABC transporter, ATP-binding protein
    1.5e-06   24.8   0.5    3.5e-06   23.5   0.0    1.6  2  TIGR00954 3a01203: peroxysomal long chain fatty acyl transporter
      0.001   14.9   0.0     0.0014   14.4   0.0    1.1  1  TIGR03348 VI_IcmF: type VI secretion protein IcmF
     0.0033   12.7   0.0     0.0046   12.2   0.0    1.1  1  TIGR01271 CFTR_protein: cystic fibrosis transmembrane conductor regulator (CFTR)
  ------ inclusion threshold ------
      0.011   12.6   0.0      0.017   12.0   0.0    1.2  1  TIGR02788 VirB11: P-type DNA transfer ATPase VirB11


Domain annotation for each model (and alignments):
>> TIGR00955  3a01204: pigment precursor permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  251.9   0.0   4.2e-77     3e-75      30     509 ..     234     712 ..     207     762 .. 0.80

  Alignments for each domain:
  == domain 1    score: 251.9 bits;  conditional E-value: 4.2e-77
   TIGR00955  30 alarkkpekellknvsGvaksGellAvlGsSGaGKtTLlnalafrsekglkvsgdvllnGekveakemraisayvqqddlfiptltvrehLmfsahlrlkrrltkkekrerveevleelgLrkcadtrigvpgrvkglSgGerkRlalaselltdPilLfcDEPTsGLDsfsaasvvkvLkklaqkgktviltiHQPsselfelfdkiillae.GrvvylGspeeavkffselglpcPenynpadFvlkvlavepgseee...sretiekicd..aeaksklsreveentnlasgkekklvkdseneekik..ykasfltqflvllkRsllsvlrdplllkvrllqvivvavligliylgqeltqkgvqni.ng..alFllltemtFqtvfavinvftaelpvflREtasglYrlsaYylaktlaelPlliilpllflsivYwmiglksgalkfltalllvvlvanvatsfglllscafestslalsvapp 509
                  l+ kk+ k++lk++sG + +  + Av+G+SG GKtT +na+a+r + g    g v +nG   + ++  +  ++v qd+++   ltv+++L ++a lrl++++ +  k+e+v  v++ lgL++ +dt++g ++ ++glSgG++kR+ ++ el+  P++Lf+DEPTsGLD +    + +vL  l ++g t+i++iHQP   +f+ f++++ll e Gr vy G++  + ++f++lg++ Pe +npad++++v    + ++ +   + +++e      ae + k +++++  t+ ++g  +   +++   +  +   + +  t +++l  R++ +v      l   +l  ivv++++++ ++  e +  g  n+ ng   +++++  +t+   ++  +       v+ RE++sg+  + a + a t+ +  ++++++++f  i+Y +++  ++++ +++    ++ + +++t+  + l +   + ++ l +ap+
  MMETSP1137-20121227|7163_1 234 GLTLKKSGKRVLKGISGRFPPRSMSAVMGASGCGKTTFMNAIATRAPYGNVE-GVVKINGVVDGLEKAGNHVGFVPQDNIMHANLTVYQNLLYNALLRLPKTMETVVKEEQVARVIKVLGLSHVQDTLVGNEE-KRGLSGGQKKRVNIGMELVMMPSILFMDEPTSGLDGAATIALARVLSLLRKSGITIICVIHQPRWAVFKEFTHLLLLGEgGRQVYCGEAGLLEPYFKTLGFTRPEGENPADWMIDVCCGLEPRKLAdgtVDKEFECPRSlfAEWDAKHAKHALLPTSRWNGGDAARSQPVAAGNPLQrrPTLPLRTAVYYLTGRAFRQVSVVD--LIFTVLTLIVVGIVLSVGNIISEFSWGGLPNRlNGaqLIYAIIIATTHRIDYGDSK------VVLDREANSGISPV-AIFFAMTIKTYATVFVKAFAFSFITYILASPLQNFVVYFVSWYGLT-LWWAGTAQWVSLCTSQGTGTIILLFAPI 712
                 45566779***************************************99766.78***************************************************************************776.6****************************************************************************7637***********************************999988887744333333333331133344455555555666666555555555555555422456678899999999998875433..33344566677777777777777777777654244113566666666666665544......47889999998665.667799***********************99999999988765444.4566666555555555555555555555 PP

>> TIGR00956  3a01205: pleiotropic drug resistance family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  205.2   0.0   4.2e-63     3e-61     769    1021 ..     235     482 ..     188     492 .. 0.88
   2 ?   -4.0   0.8       5.9   4.2e+02     491     530 ..     635     674 ..     553     686 .. 0.75

  Alignments for each domain:
  == domain 1    score: 205.2 bits;  conditional E-value: 4.2e-63
   TIGR00956  769 vkikkekrvlLdevdGwvkPGkltALmGasGAGkttLlnvLaeRvttGvitegdrlvng.rkldssFqRsiGYvqqqDlHletstvreaLrfsAylRqpkevskkekneyveevikllelesyadAvvGvpGe.GLnveqRkrltigveLvAkPklllFlDePtsGLDsqtawsivkllrkladaGqailCtiHqPsailleeFDrLLllqkGGktvYfGdlGensktlieYFekhGaekcpeeanPAewmLevi 1021
                  + +kk  +++L+ ++G + P ++ A+mGasG Gktt +n++a R   G ++ g + +ng  +  +     +G+v q+++  ++ tv   L + A lR pk + +  k+e v +vik+l+l + +d +vG   + GL+  q+kr+ ig+eLv  P ++lF+DePtsGLD  ++ ++ ++l  l ++G +i+C iHqP   +++eF +LLll  GG+ vY G+ G     l  YF++ G ++ pe +nPA+wm++v 
  MMETSP1137-20121227|7163_1  235 LTLKKSGKRVLKGISGRFPPRSMSAVMGASGCGKTTFMNAIATRAPYGNVE-GVVKINGvVDGLEKAGNHVGFVPQDNIMHANLTVYQNLLYNALLRLPKTMETVVKEEQVARVIKVLGLSHVQDTLVGNEEKrGLSGGQKKRVNIGMELVMMP-SILFMDEPTSGLDGAATIALARVLSLLRKSGITIICVIHQPRWAVFKEFTHLLLLGEGGRQVYCGEAGL----LEPYFKTLGFTR-PEGENPADWMIDVC 482 
                  56899999*******************************************.666556514445666789***********************************************************99888********************.9*****************************************************************994....557******987.8999********96 PP

  == domain 2    score: -4.0 bits;  conditional E-value: 5.9
   TIGR00956 491 yhPsadalasilselPvkliesvvfniilyflvnlrreag 530
                   P+a  +a ++    + ++++ +f++i+y l    ++  
  MMETSP1137-20121227|7163_1 635 ISPVAIFFAMTIKTYATVFVKAFAFSFITYILASPLQNFV 674
                 5688888888888888888888888888888765444443 PP

>> TIGR02857  CydD: thiol reductant ABC exporter, CydD subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.1   0.0   1.8e-30   1.3e-28     292     520 ..     200     431 ..     185     439 .. 0.82

  Alignments for each domain:
  == domain 1    score: 98.1 bits;  conditional E-value: 1.8e-30
   TIGR02857 292 aaaealvevldaeeqpeaekapltaaassslelenvsvayegrk.palkevsltvepgelvalvGaSGaGKstllklllgfve..pteGailvngaelaeldadswrkqiawvpQkPllfeg.tvaenirlarkdaseaevkealeragldelvkalpqgl..eteiG.ergagLSgGqrqRlaLArallrdapllllDEPtahLDaeteaevlealrela.egrtvllvaHrlala 520
                  aa   +   +   +   ++ + ++a+s ++e+e+v ++ + +   +lk++s +++p+++ a++GaSG+GK+t +++++  ++    eG +++ng+ ++ l+++   +++++vpQ  ++ ++ tv +n+         + ++ ++++ ++++++k l+  +  +t +G e+ +gLSgGq++R+ +   l+   ++l +DEPt+ LD ++  ++ + l  l  +g t++ v H++ +a
  MMETSP1137-20121227|7163_1 200 SAALRSQYAAQ-DVNSIGGEYE-HKAESVEIEFEGVGLTLKKSGkRVLKGISGRFPPRSMSAVMGASGCGKTTFMNAIATRAPygNVEGVVKINGV-VDGLEKA--GNHVGFVPQDNIMHANlTVYQNLLYNALLRLPKTMETVVKEEQVARVIKVLGLSHvqDTLVGnEEKRGLSGGQKKRVNIGMELVMMPSILFMDEPTSGLDGAATIALARVLSLLRkSGITIICVIHQPRWA 431
                 44433333333.2333333334.4444459****999988555556*********************************988522458********.8888866..99***********8655******************************998765433399999345789************************************9999999999878999999****9986 PP

>> TIGR00972  3a0107s01c2: phosphate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.0   0.0   1.3e-25     9e-24      12     203 ..     240     428 ..     229     444 .. 0.87

  Alignments for each domain:
  == domain 1    score: 82.0 bits;  conditional E-value: 1.3e-25
   TIGR00972  12 gekealkdvnleikknkvtaliGpsGcGkstllrslnrlndlveevrieGkvllegkdiydkkldvvelrkkvGmvfqkpnpfp.msiydnvayg..lrlkgikdkkeldeiveesLkkaalwdevkdkl..kksalsLsGGqqqrlciaralavePevlLlDePtsaLDpiatekieeliqeLkkk.ytivivthnm 203
                 + k++lk ++  ++ +++ a++G sGcGk+t++   n +    +  ++eG v ++g  ++d      +  ++vG v q     +  ++y+n+ y   lrl ++ +  + +e v + +k  +l  +v+d l  +++  +LsGGq++r+ i   l + P +l +DePts LD  at  +  +++ L+k+ +ti+ v h+ 
  MMETSP1137-20121227|7163_1 240 SGKRVLKGISGRFPPRSMSAVMGASGCGKTTFM---NAIATRAPYGNVEGVVKING--VVDG---LEKAGNHVGFVPQDNIMHAnLTVYQNLLYNalLRLPKTMETVVKEEQVARVIKVLGLS-HVQDTLvgNEEKRGLSGGQKKRVNIGMELVMMPSILFMDEPTSGLDGAATIALARVLSLLRKSgITIICVIHQP 428
                 67899***************************6...56677888899***999887..4555...566789*******88776559********96678888888888899999999999998.9***9944567789**********************************************9998*******985 PP

>> TIGR01188  drrA: daunorubicin resistance ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.7   0.2   3.4e-25   2.4e-23      13     182 ..     249     426 ..     240     429 .. 0.86

  Alignments for each domain:
  == domain 1    score: 80.7 bits;  conditional E-value: 3.4e-25
   TIGR01188  13 nlkveegevfglLGPnGAGKtttikmLttllkPdsGtarvaGyDvvrepdevRrsigvvpqkasvdedLtarenlellgel...yglpkkeaeeraeellelvelkeaadkkvkt.....ysgGmrrrlelaasliaqPevlfLDEPtiGLDprtrraiwdlieelkkegvtilltth 182
                 + + +  ++ +++G  G GKtt ++ ++t  +  + +++v+   vv   +++ +++g vpq+  +  +Lt ++nl   + l     ++  ++ee+++++++++ l + +d  v++     +sgG+++r+++++ l+  P++lf+DEPt+GLD  +  a+ ++++ l+k+g+ti+   h
  MMETSP1137-20121227|7163_1 249 SGRFPPRSMSAVMGASGCGKTTFMNAIATRAPYGNVEGVVKINGVVDGLEKAGNHVGFVPQDNIMHANLTVYQNLLYNALLrlpKTMETVVKEEQVARVIKVLGLSHVQDTLVGNeekrgLSGGQKKRVNIGMELVMMPSILFMDEPTSGLDGAATIALARVLSLLRKSGITIICVIH 426
                 55556667889******************998887777777778******************************9776654222245556799***************9999964333339****************************************************98766 PP

>> TIGR02673  FtsE: cell division ATP-binding protein FtsE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.3   0.1   4.9e-25   3.4e-23       2     198 ..     228     429 ..     227     444 .. 0.83

  Alignments for each domain:
  == domain 1    score: 80.3 bits;  conditional E-value: 4.9e-25
   TIGR02673   2 ielekvskeya.agveaLkdvslkiekgeflfltGasGaGkttllklllgaek..psrGevevagedvarlrerelpllRrkigvvfqDfkllkdrtvlenvala..levrgkkeeei.qkrveevlelvgledkakal.....peelsgGeqqRvaiaRaivnkPelllaDePtGnlDdelserildllkelnkrGttvivathdee 198
                 ie+e v ++ + +g ++Lk +s ++ ++++  ++GasG Gktt+++ + +++     +G v+++g  v       l +   ++g v qD+ +  + tv++n+     l++ ++ e+ + +++v +v++++gl++ +++l      + lsgG ++Rv i   +v  P++l  DePt  lD + +  + ++l+ l k+G+t+i + h+ +
  MMETSP1137-20121227|7163_1 228 IEFEGVGLTLKkSGKRVLKGISGRFPPRSMSAVMGASGCGKTTFMNAIATRAPygNVEGVVKINGV-VD-----GLEKAGNHVGFVPQDNIMHANLTVYQNLLYNalLRLPKTMETVVkEEQVARVIKVLGLSHVQDTLvgneeKRGLSGGQKKRVNIGMELVMMPSILFMDEPTSGLDGAATIALARVLSLLRKSGITIICVIHQPR 429
                 67777777776467899*******************************988752256888888884.33.....44556789*******************965422566555555442689************9987622211456**********************************************************865 PP

>> TIGR01842  type_I_sec_PrtD: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.0   0.4   8.2e-25   5.8e-23     315     534 ..     226     450 ..     188     458 .. 0.86

  Alignments for each domain:
  == domain 1    score: 79.0 bits;  conditional E-value: 8.2e-25
   TIGR01842 315 gelevenvslvppeekkktlkgisfalkaGealaiiGpsgsGkssLarllvGvwl..pasGsvrlDgadlkqwdretlGksiGYlPqd.veLfeGtvaeni...aRfeenadaekvieaaklagvhelilrlpkGYdteigegG.aaLsgGqrqRiaLaRalygdPklvvLDePnanLDeeGeqalakalkelkarkitvvvithrp..sllelvdkilvlkdGalkaf 534
                  e+e e v l+  ++ k++lkgis +  + ++ a++G+sg Gk++ +  +    +  +++G v+++g+  +    e+ G+++G++Pqd +   + tv +n+   a ++   + e v++  ++a v   +l l +  dt +g++   +LsgGq++R+ +   l  +P ++ +DeP + LD +  +ala+ l  l++ +it++ + h+p  ++ +   ++l+l +G  +++
  MMETSP1137-20121227|7163_1 226 VEIEFEGVGLTLKKSGKRVLKGISGRFPPRSMSAVMGASGCGKTTFMNAIATRAPygNVEGVVKINGVV-D--GLEKAGNHVGFVPQDnIMHANLTVYQNLlynALLRLPKTMETVVKEEQVARVIK-VLGLSHVQDTLVGNEEkRGLSGGQKKRVNIGMELVMMPSILFMDEPTSGLDGAATIALARVLSLLRKSGITIICVIHQPrwAVFKEFTHLLLLGEGGRQVY 450
                 56778888888889999********************************99876622689*****9973.3..46889*********9455567799999755545555569999**********98.589**********865168**********************************************************873358889999999999877776 PP

>> TIGR03608  L_ocin_972_ABC: putative bacteriocin export ABC transporter, lactococcin 972 group
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.1   0.0   9.5e-25   6.7e-23       5     195 ..     236     429 ..     233     439 .. 0.83

  Alignments for each domain:
  == domain 1    score: 79.1 bits;  conditional E-value: 9.5e-25
   TIGR03608   5 skkfkdkeilkklslkiekGelvaivGesGsGKstlLnilgllekkd..sgkvilegkekaklkskkaskllreklgylFqnfaLlenetveenlela..lklkk.kskkekekkkkevlekvglekklkkkiye.....lsgGekqRvalarillkeselilADEPtgsLDkknreevlellkelkeegktiiivtHdpe 195
                 + k++ k++lk +s ++   ++ a++G sG+GK+t++n +++   +   +g v ++g            +   +++g++ q+  +  n tv +nl     l l k +++  ke+++ +v++ +gl++ +++ + +     lsgG+k+Rv +   l+  +++++ DEPt+ LD     ++ ++l+ l+++g tii+v H+p 
  MMETSP1137-20121227|7163_1 236 TLKKSGKRVLKGISGRFPPRSMSAVMGASGCGKTTFMNAIATRAPYGnvEGVVKINGVV-------DGLEKAGNHVGFVPQDNIMHANLTVYQNLLYNalLRLPKtMETVVKEEQVARVIKVLGLSHVQDTLVGNeekrgLSGGQKKRVNIGMELVMMPSILFMDEPTSGLDGAATIALARVLSLLRKSGITIICVIHQPR 429
                 56778899*********************************998765225778888877.......334456799*******************97541134434034457999999********998877664223334**********************************************************986 PP

>> TIGR03864  PQQ_ABC_ATP: ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.5   0.1   6.2e-24   4.4e-22      12     191 ..     240     426 ..     230     452 .. 0.85

  Alignments for each domain:
  == domain 1    score: 76.5 bits;  conditional E-value: 6.2e-24
   TIGR03864  12 gkrralddvsltvakgefvaLLGpnGaGkstLfsll.trL.yeakegeikvaGldlrrapkealarlGvvfqqstlDldlsveqnlryhaaLh...Glsraeaeerieealarlglaeraeekv.....reLnGGhrrrveiarallhePklLLlDeatvGLDiesraalveevrelvreeglsvLWath 191
                 + +r+l+++s + ++ +++a++G  G Gk+t ++ + tr  y + eg +k++G+   +  ++a +++G v q++ +  +l+v qnl y a L+    +     ee+++++++ lgl++ +++ v     r L+GG+++rv+i   l+  P++L +De+t GLD ++  al + v +l r++g++++   h
  MMETSP1137-20121227|7163_1 240 SGKRVLKGISGRFPPRSMSAVMGASGCGKTTFMNAIaTRApYGNVEGVVKINGVV--DGLEKAGNHVGFVPQDNIMHANLTVYQNLLYNALLRlpkTMETVVKEEQVARVIKVLGLSHVQDTLVgneekRGLSGGQKKRVNIGMELVMMPSILFMDEPTSGLDGAATIALAR-VLSLLRKSGITIICVIH 426
                 56899***************************9766255448899********75..55667889*************************99533367777788999999999999998776543333388*********************************99988865.66788899999987777 PP

>> TIGR03375  type_I_sec_LssB: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0       2.9     2e+02     285     321 ..     165     202 ..     164     218 .. 0.54
   2 !   72.7   0.2   6.1e-23   4.3e-21     461     662 ..     223     428 ..     207     450 .. 0.86
   3 ?   -2.2   1.1       2.8     2e+02     267     285 ..     564     582 ..     560     589 .. 0.88

  Alignments for each domain:
  == domain 1    score: -2.3 bits;  conditional E-value: 2.9
   TIGR03375 285 iggplv.lvplvavplvllvglllqkplsklaeeslre 321
                 i+ p++ ++ +va++++ll ++++ k+ ++ +e+ +++
  MMETSP1137-20121227|7163_1 165 IAMPVAaFIIIVALVVLLLGSYCMAKRRNQKMEARSAA 202
                 56665515556666666666666666666555554433 PP

  == domain 2    score: 72.7 bits;  conditional E-value: 6.1e-23
   TIGR03375 461 klkGeielknvsfkYpeeekaaLknvslkikpGekvaiiGriGsGKstllklllgl..yepteGsvlldgvdirqidpadlrrnigyvpqdvtLfyG.tlrdNialgapaaedeellraaelaGvtefvkkh..pkGldlqig.erGesLSgGQrqavalaRallkdppillLDEPtsalDnsseekllerLkella.dkTlvlvtHrt 662
                   + eie++ v ++ +++ k +Lk +s +  p +  a++G  G+GK+t ++ ++    y   eG v+++gv ++ +++    +++g+vpqd+ + +  t+ +N+ ++a     +++  +++   v +++k    ++  d+ +g e+ ++LSgGQ++ v +   l++ p+il++DEPts lD ++   l + L+ l + + T++ v H+ 
  MMETSP1137-20121227|7163_1 223 AESVEIEFEGVGLTLKKSGKRVLKGISGRFPPRSMSAVMGASGCGKTTFMNAIATRapYGNVEGVVKINGV-VDGLEK--AGNHVGFVPQDNIMHANlTVYQNLLYNALLRLPKTMETVVKEEQVARVIKVLglSHVQDTLVGnEEKRGLSGGQKKRVNIGMELVMMPSILFMDEPTSGLDGAATIALARVLSLLRKsGITIICVIHQP 428
                 55668*********************************************99986433899*********9.555655..4699*******99876549*********99999999999999999999986511566799997477899********************************************999989********64 PP

  == domain 3    score: -2.2 bits;  conditional E-value: 2.8
   TIGR03375 267 talvDLpfvllfllviali 285
                 +++vDL f++l l+v++++
  MMETSP1137-20121227|7163_1 564 VSVVDLIFTVLTLIVVGIV 582
                 579************9987 PP

>> TIGR02315  ABC_phnC: phosphonate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.4   0.0   1.1e-22   8.1e-21      13     214 ..     240     438 ..     228     458 .. 0.78

  Alignments for each domain:
  == domain 1    score: 72.4 bits;  conditional E-value: 1.1e-22
   TIGR02315  13 ngkqalknvnleikkGelvaviGlsGaGkstllrsinrlveissgsillegkevtklkkkelrklrkkigmifqeynlierltvlenvLsgrlgakstlksllglfseedkekAlelLervglaela..akradqLsGGqqqRvaiaRalaqqpklilaDEPiasLDpksskqvmdllkrinkekgitvivnlHqvdla..kkyad 214
                 +gk++lk ++  + +  + av+G sG Gk+t++ +i       + + +++ + v       l+k+ +++g++ q+  + ++ltv +n+L  +l + +   ++ ++ +ee+ ++ +++L    ++++   ++    LsGGq++Rv i   l+  p++++ DEP++ LD +++ + +  + ++ +++git+i+ +Hq   a  k++++
  MMETSP1137-20121227|7163_1 240 SGKRVLKGISGRFPPRSMSAVMGASGCGKTTFMNAIATRAPYGNVEGVVKINGVV----DGLEKAGNHVGFVPQDNIMHANLTVYQNLLYNALLRLPK--TMETVVKEEQVARVIKVLGLSHVQDTLvgNEEKRGLSGGQKKRVNIGMELVMMPSILFMDEPTSGLDGAAT-IALARVLSLLRKSGITIICVIHQPRWAvfKEFTH 438
                 5899******************************998765543333333333344....6799999**********9************998876554..34456678888888888777777665411566677********************************9765.66777889999***********976553356655 PP

>> TIGR00960  3a0501s02: type II secretory pathway family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.4   0.1   1.3e-22   9.1e-21       2     198 ..     228     428 ..     227     446 .. 0.82

  Alignments for each domain:
  == domain 1    score: 72.4 bits;  conditional E-value: 1.3e-22
   TIGR00960   2 ikfeqvskaykgaaelaldnvtvkiekGelvflvGhsGaGkstllklilgiek..psaGkirvsgqdltklrdrevpflrrqiGivfqdfkllsdrtvydnvala..lri.iGvkgreieervsaalekvGlkdkakal.....PvqlsgGeqqrvaiaravvnkPallladePtgnlddelsrdilelleevnraGttvlvathde 198
                 i+fe v  + k + +  l++++ + +  ++  ++G sG+Gk+t+++ i +++     +G ++++g  +       + +  +++G v qd+ +  + tvy+n+     lr+   +++   ee+v  +++ +Gl++ + +l        lsgG+++rv+i   +v  P++l+ dePt+ ld + +  + ++l  +++ G+t++   h+ 
  MMETSP1137-20121227|7163_1 228 IEFEGVGLTLKKSGKRVLKGISGRFPPRSMSAVMGASGCGKTTFMNAIATRAPygNVEGVVKINGV-VDG-----LEKAGNHVGFVPQDNIMHANLTVYQNLLYNalLRLpKTMETVVKEEQVARVIKVLGLSHVQDTLvgneeKRGLSGGQKKRVNIGMELVMMPSILFMDEPTSGLDGAATIALARVLSLLRKSGITIICVIHQP 428
                 899******9999999*******************************9876541133455555553.333.....445679********************98752244423456666789999*********98876522211567******************************************************999974 PP

>> TIGR02982  heterocyst_DevA: ABC exporter ATP-binding subunit, DevA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.6   0.0   2.1e-22   1.5e-20      17     203 ..     241     429 ..     235     438 .. 0.84

  Alignments for each domain:
  == domain 1    score: 71.6 bits;  conditional E-value: 2.1e-22
   TIGR02982  17 rkqvlfdinleiepgeiviltGpsGsGkttlltligglrsvqeGelkvlgkelkgasekelvqvrrkiGyifqahnllesltaeqnvrmal..elkeklsakeakakaeelleavglee.....rldykpedlsgGqkqrvaiaralvarPklvladePtaaldkksgrevvellqklareqgttillvthdnr 203
                  k+vl+ i+ +  p  +  + G+sG+Gktt+++ i++   +  G+++ +  +++g+  + l +   ++G++ q   ++  lt+ qn+   +   l +++++  ++++++ +++ +gl +       +   + lsgGqk+rv i   lv  P++++ dePt+ ld  ++ ++  +l  l r+ g ti+ v h +r
  MMETSP1137-20121227|7163_1 241 GKRVLKGISGRFPPRSMSAVMGASGCGKTTFMNAIATR--APYGNVEGVV-KINGVV-DGLEKAGNHVGFVPQDNIMHANLTVYQNLLYNAllRLPKTMETVVKEEQVARVIKVLGLSHvqdtlVGNEEKRGLSGGQKKRVNIGMELVMMPSILFMDEPTSGLDGAATIALARVLS-LLRKSGITIICVIHQPR 429
                 5899999999999**********************874..4456666443.456665.46788899********************9876511566778888888999999999999985555444667889************************************99999886.66889*********998 PP

>> TIGR02142  modC_ABC: molybdate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.8   0.1   3.7e-22   2.6e-20      16     193 ..     248     429 ..     236     454 .. 0.73

  Alignments for each domain:
  == domain 1    score: 70.8 bits;  conditional E-value: 3.7e-22
   TIGR02142  16 vdlelpgkgvtalFGrsGsGktslirliaGLtrpdegeivldgevlqdsrkkiilppekRrvgyvFqeArLFpHlsvrenLrYGlkrarae..erri...seekvielLgiehLleRlpgk.....LsGGekqRvaigRAlLssPeLLlmDePLaaLDekrkkeilPyLerlsaelkiPilyvsHsld 193
                 ++ + p + + a+ G+sG+Gkt+++++ia  tr+  g++  +g v  ++     l     +vg+v q+  + + l+v +nL Y      ++  e+ +   + ++vi++Lg++h+ + l+g+     LsGG k+Rv ig  l+  P +L mDeP + LD      +   L  l ++  i i+ v H+  
  MMETSP1137-20121227|7163_1 248 ISGRFPPRSMSAVMGASGCGKTTFMNAIA--TRAPYGNV--EGVVKINGVV-DGLEKAGNHVGFVPQDNIMHANLTVYQNLLYNALLRLPKtmETVVkeeQVARVIKVLGLSHVQDTLVGNeekrgLSGGQKKRVNIGMELVMMPSILFMDEPTSGLDGAATIALARVLSLL-RKSGITIICVIHQPR 429
                 55667788899*****************9..56666653..4555444433.234556679**********************8643333311333411156789*******98766554333334********************************99888777776554.456888888888764 PP

>> TIGR03873  F420-0_ABC_ATP: proposed F420-0 ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.1   0.0   5.1e-22   3.6e-20       7     221 ..     235     454 ..     229     459 .. 0.81

  Alignments for each domain:
  == domain 1    score: 70.1 bits;  conditional E-value: 5.1e-22
   TIGR03873   7 vsvraggrlivddvdvtaPaGaltgllGPnGsGkstllrllaGll..apdaGevdlagadlkalsrrararrvalveqdsdaevplsvrdvv...alGriPhrslfaadsdedaevvdra.larvelssladrdlstlsGGerqrvhlaralaqePklllldePtnhldvsaqlellalvrelaaegvtvvvalhdlnlaa.svcdhvvvl.dgGrvvaaGpp 221
                 +++++ g+ +++++   +P+ ++++++G  G+Gk+t+++ +a        +G v+++g+ + +l++     +v  v qd+  +++l+v + +   al r+P       + ++ a v++ + l++v+ + + + +   lsGG+++rv++   l   P++l++dePt  ld +a ++l ++++ l ++g+t++  +h    a+ +   h+++l +gGr v +G++
  MMETSP1137-20121227|7163_1 235 LTLKKSGKRVLKGISGRFPPRSMSAVMGASGCGKTTFMNAIATRApyGNVEGVVKINGV-VDGLEK--AGNHVGFVPQDNIMHANLTVYQNLlynALLRLPKTMETVVKEEQVARVIKVLgLSHVQDTLVGNEEKRGLSGGQKKRVNIGMELVMMPSILFMDEPTSGLDGAATIALARVLSLLRKSGITIICVIHQPRWAVfKEFTHLLLLgEGGRQVYCGEA 454
                 678889999******************************99976411456788888876.778875..4689****************9986333578888776666655444444433225555556667788999***********************************************************999973456777777357899988875 PP

>> TIGR03265  PhnT2: putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.4   0.0   4.9e-22   3.4e-20      19     194 ..     244     427 ..     235     433 .. 0.82

  Alignments for each domain:
  == domain 1    score: 70.4 bits;  conditional E-value: 4.9e-22
   TIGR03265  19 alkdislsvkkgelvclLGPsGCGkttLLriiaGLek..qdaGaillggrditrlppqkrdyGivfqsYaLfPnltvaeniayG..L.knkklkreevaerveelLelvglsgseekyPgq.....lsGGqqqrvaLaralalsPglLLLDePlsaLDakvrekLreelkklqrklgvttimvthd 194
                 +lk is       + +++G sGCGktt++ +ia      + +G + ++g  +  l  +    G+v q   +  nltv +n+ y   L   k +++   +e+v+++++++gls++++   g      lsGGq++rv ++  l++ P++L++DeP s LD      L + l +l rk g+t i v h+
  MMETSP1137-20121227|7163_1 244 VLKGISGRFPPRSMSAVMGASGCGKTTFMNAIATRAPygNVEGVVKING-VVDGLEKAGNHVGFVPQDNIMHANLTVYQNLLYNalLrLPKTMETVVKEEQVARVIKVLGLSHVQDTLVGNeekrgLSGGQKKRVNIGMELVMMPSILFMDEPTSGLDGAATIALARVL-SLLRKSGITIICVIHQ 427
                 56666666666778899****************8765113445555555.678888999999********************9732223567788888999**********999988765434444**************************************99866.677899*********7 PP

>> TIGR03410  urea_trans_UrtE: urea ABC transporter, ATP-binding protein UrtE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.6   0.2   8.2e-22   5.8e-20      12     194 ..     241     430 ..     231     456 .. 0.77

  Alignments for each domain:
  == domain 1    score: 69.6 bits;  conditional E-value: 8.2e-22
   TIGR03410  12 esevlrdvslevekgevvavlGrngvGkttllkalvgllkv..ksGeielegeditklkpeervkaGiayvpqGreifpkltveenlelgle.alkkk.ekkip.eeiyelFPvl..kemlkRrgGd.....LsGGqqqqlaiaRaLvtePklllLDePteGiqPsiikeiekvikelakekdlaillveqvldf 194
                   +vl+++s + +  +++av+G  g Gktt++ a+ +  +    +G ++++g     ++  e++ + +++vpq   + ++ltv  nl   +   l+k+ e+ ++ e++  +  vl  +++++   G+     LsGGq++ + i+  Lv+ P +l +DePt G+  +    +++v++ l+k+ +++i+ v ++  +
  MMETSP1137-20121227|7163_1 241 GKRVLKGISGRFPPRSMSAVMGASGCGKTTFMNAIATRAPYgnVEGVVKING----VVDGLEKAGNHVGFVPQDNIMHANLTVYQNLLYNALlRLPKTmETVVKeEQVARVIKVLglSHVQDTLVGNeekrgLSGGQKKRVNIGMELVMMPSILFMDEPTSGLDGAATIALARVLSLLRKS-GITIICVIHQPRW 430
                 5689*******************************99887511556666666....467889999*********************9876541444443444442345555555422556666556445555*******************************************999985.8888877655444 PP

>> TIGR01187  potA: polyamine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.0   0.1   1.1e-21     8e-20       1     163 [.     260     430 ..     260     436 .. 0.84

  Alignments for each domain:
  == domain 1    score: 69.0 bits;  conditional E-value: 1.1e-21
   TIGR01187   1 lLGpsGsGkttlLrllaGleel..dsGkilldgedvtevpaekrsvnvvfqsyaLfPhmtveenvafg..Lk....mrkvpkaeikervkeaLelvqlee..fakrkpsqlsGGqrqrvalaravvkkPkiLLlDeplsaLDkkLrdqmqlelkalqeklGitvvlvthDqee 163
                 ++G+sG+Gktt +  +a        +G ++++g+ v        +v+ v q+  +   +tv +n+ +   L+    m+ v k+e  +rv ++L l ++++  +++ +   lsGGq++rv +   +v  P iL++Dep s LD      +   + +l +k Git++ v h  + 
  MMETSP1137-20121227|7163_1 260 VMGASGCGKTTFMNAIATRAPYgnVEGVVKINGV-VDGLEKAGNHVGFVPQDNIMHANLTVYQNLLYNalLRlpktMETVVKEEQVARVIKVLGLSHVQDtlVGNEEKRGLSGGQKKRVNIGMELVMMPSILFMDEPTSGLDGAATIALAR-VLSLLRKSGITIICVIHQPRW 430
                 58**************987654114688888876.5666677789********************9954444222277889999*********998888744699999**********************************998877765.56788999*********8665 PP

>> TIGR01166  cbiO: cobalt ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.4   0.3   1.6e-21   1.1e-19       4     185 ..     241     426 ..     239     429 .. 0.80

  Alignments for each domain:
  == domain 1    score: 68.4 bits;  conditional E-value: 1.6e-21
   TIGR01166   4 eaevlkglnlavergevlallGanGaGkstlllhlnGllrPksGkvlldGeeldysrkgllelrkkvalvlqdpddqlfaa..dvdedvafg.plnlGlseaev..errvrealaavdisgleerpt.....hllsgGekkrvaiagavalrpdvllldePtagldpaGaeqlleilrklreeGktvvisth 185
                 + +vlkg++ ++   ++ a++Ga G+Gk+t+++ ++       G+v  +  +++    gl ++ ++v++v qd    ++ a  +v +++ +  +l l  + + v  e++v   ++++++s++++ ++     + lsgG+kkrv i   +++ p +l++dePt+gld+a +  l+++l+ lr++G t++   h
  MMETSP1137-20121227|7163_1 241 GKRVLKGISGRFPPRSMSAVMGASGCGKTTFMNAIATR--APYGNVE-GVVKINGVVDGLEKAGNHVGFVPQD---NIMHAnlTVYQNLLYNaLLRLPKTMETVvkEEQVARVIKVLGLSHVQDTLVgneekRGLSGGQKKRVNIGMELVMMPSILFMDEPTSGLDGAATIALARVLSLLRKSGITIICVIH 426
                 6789*****************************99864..4445543.23344555689999********775...5555523688888875256777666665345689999999999999886542222278******************************************************9888 PP

>> TIGR02868  CydC: thiol reductant ABC exporter, CydC subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.7   1.1   1.9e-20   1.4e-18     300     530 .]     193     428 ..     162     428 .. 0.80

  Alignments for each domain:
  == domain 1    score: 64.7 bits;  conditional E-value: 1.9e-20
   TIGR02868 300 vraaaeRieevldakvevaeasapaaeaaasekptlelrdlsvsypgaee.vlkgvsldlepGervavvGasGaGKstLlallaglld..plkGevtldgvsvaslsesevrrvvsvlaqdaHlFdt.tvreNlrlarpdatdeellaaLervgLadwlra..LpdGldtklgeggar.lSGGerqRlalARaLladapvllLDEPtehLDaeteeelledLl.aaeegrtvvlvthrl 530
                  ++  +R +++  +   ++ +s   + + ++e++++e++++    +++ + vlkg+s   +p +  av+GasG+GK+t ++++a   +    +G v ++gv v  l  ++  + v +++qd  + +  tv +Nl+  +     + +++++++ + a+ ++   L +  dt +g++ +r lSGG+++R+ +   L+    +l +DEPt +LD ++  +l + L    ++g t++ v h++
  MMETSP1137-20121227|7163_1 193 NQKMEARSAALRSQYAAQDVNSIGGEYEHKAESVEIEFEGVGLTLKKSGKrVLKGISGRFPPRSMSAVMGASGCGKTTFMNAIATRAPygNVEGVVKINGV-VDGL--EKAGNHVGFVPQDNIMHANlTVYQNLLYNALLRLPKTMETVVKEEQVARVIKVlgLSHVQDTLVGNEEKRgLSGGQKKRVNIGMELVMMPSILFMDEPTSGLDGAATIALARVLSlLRKSGITIICVIHQP 428
                 33333444444444444445555555555558899******9999998888*****************************999876652256899999993.3343..445789*******98886559********99999********999999999875578999****9776544****************************************99987889999999999985 PP

>> TIGR00968  3a0106s01: sulfate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.6   0.0   1.4e-20     1e-18      14     190 ..     243     427 ..     235     445 .. 0.82

  Alignments for each domain:
  == domain 1    score: 65.6 bits;  conditional E-value: 1.4e-20
   TIGR00968  14 qalddvdlevktGslvallGpsGsGkstllrviaGlek..pdsGrilleGrdvtrvkvrdreiGfvfqhyalfkhltvrdniafGleir..kkdkakik.akveellelvqleklgdry.....psqlsGGqrqrvalaralavepqvllldepfgaldakvrkelrawlrklhdevkvttvfvthd 190
                 ++l+ ++   +  s+ a++G sG Gk+t++ +ia      + +G + ++G  v  ++    ++Gfv q+  +   ltv +n+ +   +r  k+ ++ +k ++v +++++++l++++d          lsGGq++rv +   l + p +l++dep + ld      l + l  l  +  +t + v h+
  MMETSP1137-20121227|7163_1 243 RVLKGISGRFPPRSMSAVMGASGCGKTTFMNAIATRAPygNVEGVVKINGV-VDGLEKAGNHVGFVPQDNIMHANLTVYQNLLYNALLRlpKTMETVVKeEQVARVIKVLGLSHVQDTLvgneeKRGLSGGQKKRVNIGMELVMMPSILFMDEPTSGLDGAATIALARVLSLLR-KSGITIICVIHQ 427
                 5788888889999*********************98652256899999997.6677888899*********************997666546555554427899********999987622111457********************************999988888876554.456666767665 PP

>> TIGR03796  NHLM_micro_ABC1: NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.0   0.0   4.8e-20   3.4e-18     474     684 ..     224     442 ..     188     454 .. 0.78
   2 ?   -3.4   0.2       5.9   4.1e+02     156     213 ..     637     694 ..     624     699 .. 0.75

  Alignments for each domain:
  == domain 1    score: 63.0 bits;  conditional E-value: 4.8e-20
   TIGR03796 474 LsGkvelrnvtfgysaleapliedfslslkpGqrvAlvGgsGsGkstiaklvaGl..yepwsGeilfDgkpreeiprevlanslalvdqd.ivlfegtvrdnltlwdetip.eedlvrAakDAaihdvilarpggy..eael.aegganlsGGqrqRleiARaLvknPsiLilDEatsaLDaetE...kaidenlrrRgctciivaH..RLstiRdcdeiivl 684
                  s ++e+++v  + ++  + +++++s +  p +  A++G+sG+Gk t    +a    y +++G + ++g+    +  e   n + +v qd i+  + tv +nl l+++ +   + +++ +k+ ++  vi  +   +  ++ + +e+ + lsGGq++R++i   Lv  PsiL +DE ts LD ++     ++ + lr+ g+t+i v H  R +  ++  ++++l
  MMETSP1137-20121227|7163_1 224 ESVEIEFEGVGLTLKKSGKRVLKGISGRFPPRSMSAVMGASGCGKTTFMNAIATRapYGNVEGVVKINGVVD-GL--EKAGNHVGFVPQDnIMHANLTVYQNL-LYNALLRlPKTMETVVKEEQVARVIKVLGLSHvqDTLVgNEEKRGLSGGQKKRVNIGMELVMMPSILFMDEPTSGLDGAATialARVLSLLRKSGITIICVIHqpRWAVFKEFTHLLLL 442
                 4557999999999**************************************99643499**********865.44..456799****9983555578*****9.788877624677888899999988876654431033343588899********************************87652225678899**********995555555665555555 PP

  == domain 2    score: -3.4 bits;  conditional E-value: 5.9
   TIGR03796 156 llllvlaglllvlpglvvpafskifvDeilveeaqewlrplllgllltallqvvltll 213
                  +++ +a  + + ++++v af+  f+ +il +  q+++  ++    lt+   ++ +++
  MMETSP1137-20121227|7163_1 637 PVAIFFAMTIKTYATVFVKAFAFSFITYILASPLQNFVVYFVSWYGLTLWWAGTAQWV 694
                 4556666667788899999999999999999999999999888888888777777665 PP

>> TIGR03258  PhnT: 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.0   0.1   7.5e-20   5.3e-18      14     203 ..     235     431 ..     225     457 .. 0.82

  Alignments for each domain:
  == domain 1    score: 63.0 bits;  conditional E-value: 7.5e-20
   TIGR03258  14 lrvaygarvvlddlsleieaGellallGksGsGkttllravaGfvkadG...GrllvadrdlthlppykrnlallvqnyalfphlkveenvafG..lrarkqskali.aervadalklvqlsdaaarl.....paqlsGGqqqrvalaralvvrpdvllldeplsaldaqlrasvveelkalhrelpeltvlyvthdrdea 203
                 l+++  ++ vl+ +s    +  + a++G sG+Gktt + a+a    + G   G + + +  +  l      ++++ q+  +   l+v++n+ +   lr  k  ++ + +e+va  +k+++ls +   l        lsGGq++rv +   lv+ p +l++dep s ld     ++   l  l +    +t+++v h+   a
  MMETSP1137-20121227|7163_1 235 LTLKKSGKRVLKGISGRFPPRSMSAVMGASGCGKTTFMNAIATRA-PYGnveGVVKINGV-VDGLEKAGNHVGFVPQDNIMHANLTVYQNLLYNalLRLPKTMETVVkEEQVARVIKVLGLSHVQDTLvgneeKRGLSGGQKKRVNIGMELVMMPSILFMDEPTSGLDGAATIALARVLSLLRK--SGITIICVIHQPRWA 431
                 566778999*********************************865.44446677777764.6778888889********************98655787776665551679*******999987655422111678*********************************999999998888865..589*******86555 PP

>> TIGR03411  urea_trans_UrtD: urea ABC transporter, ATP-binding protein UrtD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.8   0.1   1.9e-18   1.3e-16      13     200 ..     240     426 ..     228     436 .. 0.78

  Alignments for each domain:
  == domain 1    score: 58.8 bits;  conditional E-value: 1.9e-18
   TIGR03411  13 dgfkalndlslsveegelrviiGpnGaGkttllDvitGktrpdeGsvlfkgkdltklkeaeiarlGigRkfqkpsvfeeltvlenlelalkadksvlallfarlskeekerieevleligLeeka..dkkaglLshGqkqwLeigmllvqepkllllDePvaGmtdeetektaellkelake.rsvvvveh 200
                  g + l+ +s +  ++++ +++G+ G Gktt++++i+ ++    G+v    k    ++  e a   +g   q   ++ +ltv +nl    +a  ++ +++ + +++e+ +r+ +vl l +++++   +++   Ls Gqk++++igm lv  p++l++DeP++G+  + t   a++l+ l+k+  +++ v h
  MMETSP1137-20121227|7163_1 240 SGKRVLKGISGRFPPRSMSAVMGASGCGKTTFMNAIATRA--PYGNVEGVVKINGVVDGLEKAGNHVGFVPQDNIMHANLTVYQNLLY--NALLRLPKTMETVVKEEQVARVIKVLGLSHVQDTLvgNEEKRGLSGGQKKRVNIGMELVMMPSILFMDEPTSGLDGAATIALARVLSLLRKSgITIICVIH 426
                 56677788888888999*******************9665..55655433332223445566777788889**************975..4455667777777788887777777777666665422566677*******************************************999886246666666 PP

>> TIGR02203  MsbA_lipidA: lipid A export permease/ATP-binding protein MsbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.9   0.1     4e-18   2.8e-16     299     524 ..     194     422 ..     160     446 .. 0.78

  Alignments for each domain:
  == domain 1    score: 56.9 bits;  conditional E-value: 4e-18
   TIGR02203 299 qkglaaaesvfallDsppekdeGtralervr.GkvefrnvtfrypgddrealdsislkveaGevvalvGrsGsGkstlvnllp.RF.yepdsGeillDgvdladlkLasLRrqvalvsqdvvL.FddtiaenvaYgeleevdeaeveealaaaylkdlvdk..lpeGldtevGengsk.LsGGqRqRlaiaRallkdaPiLiLDeatsaLDneseRlvqaaLerlmkgRttlv 524
                 qk+ a +  + ++   ++ +  G    ++++  ++ef+ v  + +++++ +l++is +  +  + a++G sG Gk+t +n ++ R  y + +G + ++gv   d  L++  ++v +v qd ++  + t+ +n+ Y +l  +++  +e+++++ ++  ++    l +  dt vG++  + LsGGq++R+ i   l+    iL +De ts LD  +  ++   L  l k   t++
  MMETSP1137-20121227|7163_1 194 QKMEARSAALRSQYAAQDVNSIGGEYEHKAEsVEIEFEGVGLTLKKSGKRVLKGISGRFPPRSMSAVMGASGCGKTTFMNAIAtRApYGNVEGVVKINGVV--D-GLEKAGNHVGFVPQDNIMhANLTVYQNLLYNALLRLPK-TMETVVKEEQVARVIKVlgLSHVQDTLVGNEEKRgLSGGQKKRVNIGMELVMMPSILFMDEPTSGLDGAATIALARVLSLLRKSGITII 422
                 5555555555555555555555555555555158*********************************************9886253478889999998873..3.689999********86551688**********977654.567777777777777651155667999**987665********************************9999999888888887766655 PP

>> TIGR02314  ABC_MetN: D-methionine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.1   0.0   4.4e-18   3.1e-16      12     218 ..     238     447 ..     227     457 .. 0.79

  Alignments for each domain:
  == domain 1    score: 57.1 bits;  conditional E-value: 4.4e-18
   TIGR02314  12 dqgdkkikaldnvslfvpkgqifgvigasgagkstlircvnllekptsgavivdgkdlttlsnaelvkarrqigmifqhfnllssrtvfgnvalp..lelentpkekik.rkvtellalvglsdkkdsypsn.....lsggqkqrvaiaralasepkvllcdeatsaldpattqsilellkeinrrlgltillithe..mdvvkricdevavidkge 218
                 ++++k+   l+ +s   p   +  v+gasg gk+t++  +    +   g+  v+g+   +     l ka  ++g++ q   + +  tv++n+     l l +t +  +k ++v+ ++ ++gls+ +d+   n     lsggqk+rv i   l   p +l+ de ts ld a+t ++  +l  + r+ g+ti+ + h+    v k+  + + + ++g+
  MMETSP1137-20121227|7163_1 238 KKSGKR--VLKGISGRFPPRSMSAVMGASGCGKTTFMNAIAT--RAPYGN--VEGVVKINGVVDGLEKAGNHVGFVPQDNIMHANLTVYQNLLYNalLRLPKTMETVVKeEQVARVIKVLGLSHVQDTLVGNeekrgLSGGQKKRVNIGMELVMMPSILFMDEPTSGLDGAATIALARVLS-LLRKSGITIICVIHQprWAVFKEFTHLLLLGEGGR 447
                 555554..58999999999*****************998865..444454..3555444555668999**********99999999*****86532267777777777525789999999999999998776666669***********************************99888885.77999*******99732467777777666655555 PP

>> TIGR01277  thiQ: thiamine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.4   0.1   4.6e-18   3.3e-16      27     192 ..     258     431 ..     255     449 .. 0.83

  Alignments for each domain:
  == domain 1    score: 57.4 bits;  conditional E-value: 4.6e-18
   TIGR01277  27 vailGesGaGkstllnliaGfl..epasGeikvndkdhtrsapyerpvsmlfqennlfahltvrqni...glGlkpglklnavqkekvedvarqvGiadylerlpee.....lsGGqrqrvalarclvrekpillldepfsaldpklreemlalvkkladekkltlllvthslsda 192
                  a++G sG Gk+t++n ia       ++G +k+n++   ++      v  + q+n + a ltv qn+   +l   p    + v++e+v  v + +G+++  + l ++     lsGGq++rv +   lv    il++dep s ld +     la v  l  +  +t++ v h++  a
  MMETSP1137-20121227|7163_1 258 SAVMGASGCGKTTFMNAIATRApyGNVEGVVKINGVV-DGLEKAGNHVGFVPQDNIMHANLTVYQNLlynALLRLPKTMETVVKEEQVARVIKVLGLSHVQDTLVGNeekrgLSGGQKKRVNIGMELVMMPSILFMDEPTSGLDGAAT-IALARVLSLLRKSGITIICVIHQPRWA 431
                 59*****************864225799******974.455556678999****************944445556777889999***************9999975334556********************************9975.5688899999999*********98754 PP

>> TIGR01978  sufC: FeS assembly ATPase SufC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.5   0.0   7.9e-18   5.6e-16       8     218 ..     237     442 ..     232     466 .. 0.79

  Alignments for each domain:
  == domain 1    score: 56.5 bits;  conditional E-value: 7.9e-18
   TIGR01978   8 vsvedkeiLkglnlevkkGevhaimGpnGsGkstLskvlaghekyevtsGeiklkgqdlleleveeraraGlflafqapeeipGvsnkeflrsalnavrka.rgeeeldllefekllkeklelleldeelleRslneGfsGGekkrneilqlallePklaiLDeiDsGlDvDalkivaegvnklreeekalliithyerllelikPdvvhvl 218
                 ++   k++Lkg++    +  + a+mG+ G Gk t ++++a +  y  ++G +k++g       v+   +aG +++f    +i   + + +    +na  +  +  e++   e    + + l l +++ +l+  +   G sGG kkr +i   +++ P++  +De  sGlD  a  ++a++++ lr++  +++ + h+ r     + +++ +l
  MMETSP1137-20121227|7163_1 237 LKKSGKRVLKGISGRFPPRSMSAVMGASGCGKTTFMNAIATRAPYGNVEGVVKINGV------VDGLEKAGNHVGFVPQDNIMHANLTVYQNLLYNALLRLpKTMETVVKEEQVARVIKVLGLSHVQDTLVGNEEKRGLSGGQKKRVNIGMELVMMPSILFMDEPTSGLDGAATIALARVLSLLRKSGITIICVIHQPRWAVFKEFTHLLLL 442
                 566789***********************************************9995......4555566777777777777777777666666776653213333333344444455556666667799999999*************9999*******************************************9997655444444444 PP

>> TIGR01184  ntrCD: nitrate ABC transporter, ATP-binding proteins C and D
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.1   0.0   1.2e-17   8.2e-16      14     180 ..     258     433 ..     245     453 .. 0.85

  Alignments for each domain:
  == domain 1    score: 56.1 bits;  conditional E-value: 1.2e-17
   TIGR01184  14 islighsgcgkstllnliaglek..ptsgavileg..keitepgpdrmvvfqnysllpwltvreni.alavdavlrdlskserreiveehielvglreaadk.....rpeqlsggmkqrvaiaralsirpklllldepfgaldaltreelqekllkiveearvtvlmvthdvdeall 180
                  +++g sgcgk+t++n ia  +     +g v+++g    +++ g +   v q+  +   ltv++n+ + a+ +  +++++  ++e v   i+++gl++ +d      +   lsgg k+rv i   l + p +l++dep   ld  +   l  ++l +++++ +t++ v h+   a++
  MMETSP1137-20121227|7163_1 258 SAVMGASGCGKTTFMNAIATRAPygNVEGVVKINGvvDGLEKAGNHVGFVPQDNIMHANLTVYQNLlYNALLRLPKTMETVVKEEQVARVIKVLGLSHVQDTlvgneEKRGLSGGQKKRVNIGMELVMMPSILFMDEPTSGLDGAATIALA-RVLSLLRKSGITIICVIHQPRWAVF 433
                 579****************87642257899****94446999***********************7356888999999999999*************99986222114567********************************99999885.7899**************8777666 PP

>> TIGR03771  anch_rpt_ABC: anchored repeat-type ABC transporter, ATP-binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.9   0.1   1.5e-17     1e-15       9     177 ..     258     432 ..     253     445 .. 0.81

  Alignments for each domain:
  == domain 1    score: 55.9 bits;  conditional E-value: 1.5e-17
   TIGR03771   9 lgllGpnGaGkttllrailglik..vakGsvkvagkssr..kgrreiGyvpqrhefawdfpidveqtvlsGragliGllrrpkkadfaavadalervklteladrpvGe.....lsGGqrqrvlvaralavkpslllldepftGldlpsqellvelfeelagegtailmtthdlaeav 177
                  +++G  G Gktt++ ai +  +  + +G vk++g   +  k+  ++G+vpq   +     + v+q +l     ++     + +++   va  ++   l++++d  vG+     lsGGq++rv +   l + ps+l++dep +Gld  ++  l+ +++ l + g +i+ + h+   av
  MMETSP1137-20121227|7163_1 258 SAVMGASGCGKTTFMNAIATRAPygNVEGVVKINGVVDGleKAGNHVGFVPQDNIMH--ANLTVYQNLLYNALLRLPKTMETVVKE-EQVARVIKVLGLSHVQDTLVGNeekrgLSGGQKKRVNIGMELVMMPSILFMDEPTSGLDGAATIALARVLSLLRKSGITIICVIHQPRWAV 432
                 5789**************9888733578******98765226778*******87654..557888888876655555444443333.4567788888999999999996566669********************************************************9866665 PP

>> TIGR02204  MsbA_rel: ABC transporter, permease/ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.9   0.0   3.6e-17   2.6e-15     335     533 ..     225     426 ..     210     455 .. 0.81

  Alignments for each domain:
  == domain 1    score: 53.9 bits;  conditional E-value: 3.6e-17
   TIGR02204 335 rgeiefeevkfayParpdqkaldgldltvrpGetvalvGPsGaGkstllelll.r.fydPqsGailldGvdlreldpeelrerlalvpqdsalfaa.svleniryGrpdasdeeveaaakaaeadefis..klpeGydtllG.ergvtLsGGqkqriaiarailkdapiLLLdeatsaLdaeseqlvqqaleelmkgrttlv.iah 533
                 + eiefe v ++   ++ + +l+g++ +  p    a++G sG Gk+t ++ +  r  y   +G ++++Gv +  l+  +  +++ +vpqd  + a+  v +n+ y  +    + +e+  k+ + +  i+   l++  dtl+G e+   LsGGqk+r+ i   ++    iL++de ts Ld  +  ++ + l  l k   t++ + h
  MMETSP1137-20121227|7163_1 225 SVEIEFEGVGLTLK-KSGKRVLKGISGRFPPRSMSAVMGASGCGKTTFMNAIAtRaPYGNVEGVVKINGV-VDGLE--KAGNHVGFVPQDNIMHANlTVYQNLLYNALLRLPKTMETVVKEEQVARVIKvlGLSHVQDTLVGnEEKRGLSGGQKKRVNIGMELVMMPSILFMDEPTSGLDGAATIALARVLSLLRKSGITIIcVIH 426
                 46899999999875.56699*****************************987524259***********8.55555..45799**********9874799*****98777777777777777777666511578899*****444567*********************************************9998877762445 PP

>> TIGR02211  LolD_lipo_ex: lipoprotein releasing system, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.3   0.1     8e-17   5.6e-15      16     205 ..     240     431 ..     232     446 .. 0.77

  Alignments for each domain:
  == domain 1    score: 53.3 bits;  conditional E-value: 8e-17
   TIGR02211  16 leievlkgvsleiekgelvaivGssGsGkstllhllggld..kptsGevllkGkelsklssneraklrnkklGfiyqfhhlladftalenvamPlliskkskkea...kerakellekvglekri.....nkkpselsGGerqrvaiaralvnkPklvladePtgnldkktakkifelllelnkekntallvvthdlela 205
                    +vlkg+s +     + a++G+sG Gk+t++  +++       +G v+++G  ++ l    +     +++Gf+ q   + a++t+ +n+   +l++  ++ e+   +e+ +++++ +gl++       n++   lsGG+++rv i   lv  P++++ dePt+ ld +++ ++ ++l  l ++++++++ v h+ + a
  MMETSP1137-20121227|7163_1 240 SGKRVLKGISGRFPPRSMSAVMGASGCGKTTFMNAIATRApyGNVEGVVKINGV-VDGLE---K---AGNHVGFVPQDNIMHANLTVYQNLLYNALLRLPKTMETvvkEEQVARVIKVLGLSHVQdtlvgNEEKRGLSGGQKKRVNIGMELVMMPSILFMDEPTSGLDGAATIALARVL-SLLRKSGITIICVIHQPRWA 431
                 56789*****************************99975411345677777774.23332...2...2469********************999999866555532226677788899999987611122455667********************************99887777666.566788999******98765 PP

>> TIGR03740  galliderm_ABC: lantibiotic protection ABC transporter, ATP-binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.9   0.4   1.2e-16   8.4e-15      12     182 ..     241     426 ..     232     429 .. 0.81

  Alignments for each domain:
  == domain 1    score: 52.9 bits;  conditional E-value: 1.2e-16
   TIGR03740  12 kqavvnnvslkvkknsvygllGpnGaGkstllklltGl..lrktsGeilldgrew.trkdlkkiGsliesPalyenltarenlkvrtlll.......glpesrieevlkivdlentekk.....kakqfslGmkqrlGiaiallnkPkllildePtnGldPlGiqelreliksfpekGitvilssh 182
                  + v++ +s + + +s+ +++G  G+Gk+t +  ++      + +G ++++g      k  +++G + ++  ++ nlt ++nl  ++ll+        ++e+++  v+k+++l++ +       + + +s G k+r+ i + l+  P +l +dePt Gld      l +++  +++ Git+i   h
  MMETSP1137-20121227|7163_1 241 GKRVLKGISGRFPPRSMSAVMGASGCGKTTFMNAIATRapYGNVEGVVKINGVVDgLEKAGNHVGFVPQDNIMHANLTVYQNLLYNALLRlpktmetVVKEEQVARVIKVLGLSHVQDTlvgneEKRGLSGGQKKRVNIGMELVMMPSILFMDEPTSGLDGAATIALARVLSLLRKSGITIICVIH 426
                 5679999**************************99875124678999***99754156778899*9999999999*****9997665432111111157899999****9999987765111115556999**************************************************98766 PP

>> TIGR00958  3a01208: antigen peptide transporter 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.7   0.0   1.3e-16   9.2e-15     468     689 ..     217     445 ..     212     457 .. 0.81

  Alignments for each domain:
  == domain 1    score: 51.7 bits;  conditional E-value: 1.3e-16
   TIGR00958 468 gtlapknleGkveFqdVsFsYPsrpdkpvlkdLtftlepGevvalVGPsGsGKStvaalle..nlYqPtgGqvllDgkplkeydhkylhrkvalVgqEPvlfsg.svreNiaYGltktedeevtaaakaanahdFis..elekgydtevgek.GsqlsgGqkqriAiARALvrkPrvLiLDeAtSALDaeveqllqe...sksaksrtvlliah..rLstvekadkilvlkkg 689
                 g+++ k  + ++eF+ V  +  +++ k+vlk+++    p +  a+ G sG GK t +  +     Y   +G v + g+ +  ++     ++v+ V q+ ++++  +v +N+ Y       +++ +++k+ ++   i+  +l +  dt vg++    lsgGqk+r+ i   Lv  P +L +De tS LD +   +l +     ++++ t++ + h  r  + ++  + l+l +g
  MMETSP1137-20121227|7163_1 217 GEYEHKAESVEIEFEGVGLTL-KKSGKRVLKGISGRFPPRSMSAVMGASGCGKTTFMNAIAtrAPYGNVEGVVKINGV-VDGLEKA--GNHVGFVPQDNIMHANlTVYQNLLYNALLRLPKTMETVVKEEQVARVIKvlGLSHVQDTLVGNEeKRGLSGGQKKRVNIGMELVMMPSILFMDEPTSGLDGAATIALARvlsLLRKSGITIICVIHqpRWAVFKEFTHLLLLGEG 445
                 5666777777899****9997.78999****************************98877511579*********997.7777775..578*********986549*******86665566677777777777766522788999****9651567*********************************77777776544556678899999983345677777777777776 PP

>> TIGR03522  GldA_ABC_ATP: gliding motility-associated ABC transporter ATP-binding subunit GldA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.6   0.1   1.4e-16     1e-14      15     186 ..     242     422 ..     231     430 .. 0.84

  Alignments for each domain:
  == domain 1    score: 52.6 bits;  conditional E-value: 1.4e-16
   TIGR03522  15 qkaldevsfeaekGeivGflGPnGaGkstlmkiltgylkadsGsvavagedvlknslevrkniGylPehnPlyldlyvreylefsaaly...klkgrklkkrveelielvGlkaeqhkkiga.....lskGyrqrvGlakallhdPkvlildePttGldPnqlveirevikeiakdk.tvi 186
                 +++l+ +s +  + ++   +G  G Gk+t m  +++  +       v+ + v++   ++ +++G++P+ n ++ +l v + l ++a l     ++  +++++v+++i+  Gl++ q   +g+     ls G ++rv +   l+  P++l +dePt+Gld    +++ +v+  + k   t+i
  MMETSP1137-20121227|7163_1 242 KRVLKGISGRFPPRSMSAVMGASGCGKTTFMNAIATRAPYGNVEGVVKINGVVDGLEKAGNHVGFVPQDNIMHANLTVYQNLLYNALLRlpkTMETVVKEEQVARVIKVLGLSHVQDTLVGNeekrgLSGGQKKRVNIGMELVMMPSILFMDEPTSGLDGAATIALARVLSLLRKSGiTII 422
                 6788888888889999999*************9998766555444566667899999999*************************988533368888999**************9999887545555999********************************9999999988877641444 PP

>> TIGR03797  NHLM_micro_ABC2: NHLM bacteriocin system ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.1       5.1   3.6e+02     280     311 ..     169     200 ..     162     215 .. 0.66
   2 !   52.0   0.1   1.3e-16     9e-15     451     639 ..     227     419 ..     219     453 .. 0.81

  Alignments for each domain:
  == domain 1    score: -2.9 bits;  conditional E-value: 5.1
   TIGR03797 280 vavllalvaiavtlvlgllqvrkerklleleg 311
                 va  +++va++v+l+ ++++ +++++++e ++
  MMETSP1137-20121227|7163_1 169 VAAFIIIVALVVLLLGSYCMAKRRNQKMEARS 200
                 56667777777777777777776666666543 PP

  == domain 2    score: 52.0 bits;  conditional E-value: 1.3e-16
   TIGR03797 451 aievdrvtFrYekdgplvLddvslkiepGefvaivGaSGsGKStllrlLLgFekP...esGsvlyDGqdlekldvqavRrqlGvVLQngrllsg.sileniaggasltldeawea.armagleeDikamPmgl..hTvi.segggtlSGGQrQRlliAralvrkPrillfDEATSALDNrtQaiVsesleklkvtRi 639
                 +ie + v  + +k+g++vL+ +s +  p    a++GaSG+GK t++  +     P    +G v   G  +++l+++    ++G V Q+  + ++ ++++n++ +a l l + +e  +++  ++  ik + ++    T++ +e   +lSGGQ++R+ i   lv  P il++DE TS LD  +  +    l+ l+ + i
  MMETSP1137-20121227|7163_1 227 EIEFEGVGLTLKKSGKRVLKGISGRFPPRSMSAVMGASGCGKTTFMNAIA-TRAPygnVEGVVKINGV-VDGLEKA--GNHVGFVPQDNIMHANlTVYQNLLYNALLRLPKTMETvVKEEQVARVIKVLGLSHvqDTLVgNEEKRGLSGGQKKRVNIGMELVMMPSILFMDEPTSGLDGAATIALARVLSLLRKSGI 419
                 68889999999***********************************9865.45563336899***997.8999876..589******9887765489*********9999998852688999999999887642268884577889********************************9876555555544443333 PP

>> TIGR01189  ccmA: heme ABC exporter, ATP-binding protein CcmA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.3   0.0   1.6e-16   1.2e-14       5     186 ..     234     427 ..     230     436 .. 0.82

  Alignments for each domain:
  == domain 1    score: 52.3 bits;  conditional E-value: 1.6e-16
   TIGR01189   5 elaveRgervlleglsfelaaGealvveGpnGiGKttLLRilaGLlk..pesGevelndkelaeqrdelaeellylgHldglKaeLsalEnLkfyaallq........seqktveealekvgLsgledlpvaq.....LsAGqkrRlalarLllskaplWiLDEPttalDkegvellaellaaHlargGivll.athq 186
                  l+ ++ ++++l+g+s ++ +  + +v G  G GKtt +  +a   +    +G v++n+  + +  ++  +++ ++   + + a+L++  nL + a l +         ++++v   ++ +gLs+++d++v +     Ls Gqk+R+ ++  l+    +  +DEPt  lD +++  la++l+  l++ Gi+++   hq
  MMETSP1137-20121227|7163_1 234 GLTLKKSGKRVLKGISGRFPPRSMSAVMGASGCGKTTFMNAIATRAPygNVEGVVKING--VVDGLEKAGNHVGFVPQDNIMHANLTVYQNLLYNALL-RlpktmetvVKEEQVARVIKVLGLSHVQDTLVGNeekrgLSGGQKKRVNIGMELVMMPSILFMDEPTSGLDGAATIALARVLSL-LRKSGITIIcVIHQ 427
                 6899999************************************98763368999***94..4566668899*********************875543.3355555543344788999999*******9985334444***********************************9999988765.66666665504555 PP

>> TIGR01846  type_I_sec_HlyB: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.0   0.0   3.7e-15   2.6e-13     455     667 ..     227     445 ..     214     457 .. 0.84

  Alignments for each domain:
  == domain 1    score: 47.0 bits;  conditional E-value: 3.7e-15
   TIGR01846 455 aiefenirfrykedspevlsnlsldikaGeviGivGpsGsGkstltkll.qrl.yvPekGrvlvdgvdlaladPawlrrqvgvvlqenvlfsr.sirdni...alakPaiseekviaaaklaGahdfiselkqGyetevg.ekGaalsGGqrqrialaralvanPrilildeatsaldyeseavimrnlreick.grtviiiah..rlstvraadrilvlekG 667
                 +iefe + +  k+    vl+ +s   ++  +  ++G sG+Gk+t+   +  r  y   +G v ++gv  +l        +vg v q+n++  + ++ +n+   al +    +e v++  ++a   + +  l +  +t vg e+   lsGGq++r+ +   lv  P il +de ts ld  +  ++ r l+ + k g t+i++ h  r +  ++  ++l+l +G
  MMETSP1137-20121227|7163_1 227 EIEFEGVGLTLKKSGKRVLKGISGRFPPRSMSAVMGASGCGKTTFMNAIaTRApYGNVEGVVKINGVVDGLE---KAGNHVGFVPQDNIMHANlTVYQNLlynALLRLPKTMETVVKEEQVARVIK-VLGLSHVQDTLVGnEEKRGLSGGQKKRVNIGMELVMMPSILFMDEPTSGLDGAATIALARVLSLLRKsGITIICVIHqpRWAVFKEFTHLLLLGEG 445
                 799999**************************************9887624543777889999999754443...44579*********985437889873334555566899********99887.67899*******7466789***************************************999999876478******96667788888888877665 PP

>> TIGR01257  rim_protein: rim ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.8   0.0   3.2e-15   2.3e-13     953    1119 ..     252     427 ..     232     462 .. 0.83

  Alignments for each domain:
  == domain 1    score: 45.8 bits;  conditional E-value: 3.2e-15
   TIGR01257  953 fyenqitaflghngagktttlsiltgllpptsgtvlvggkdietnldavrqslgmcpqhnilfhhltvaehilfyaqlkgrsweeaqleme...amledtglhhkr.....neeaqdlsgglqrklsvaiafvgdakvvvldeptsgvdpysrrsiwdll.lkyrsgrtiimsthh 1119
                  f    ++a++g  g+gktt +  ++   p      +v  + +   l+   + +g++pq ni+   ltv + +l+ a l+     e+ ++ e    +++  gl h +     nee + lsgg ++++ + + +v    ++ +deptsg+d  +  ++  +l l  +sg tii   h+
  MMETSP1137-20121227|7163_1  252 FPPRSMSAVMGASGCGKTTFMNAIATRAPYGNVEGVVKINGVVDGLEKAGNHVGFVPQDNIMHANLTVYQNLLYNALLRLPKTMETVVKEEqvaRVIKVLGLSHVQdtlvgNEEKRGLSGGQKKRVNIGMELVMMPSILFMDEPTSGLDGAATIALARVLsLLRKSGITIICVIHQ 427 
                  5666789***************99999998766666666668899999******************************9766655555444111467889999975445559***************************************999998766366789*****99886 PP

>> TIGR02770  nickel_nikD: nickel import ATP-binding protein NikD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.0   0.0     6e-15   4.3e-13      14     185 ..     257     427 ..     249     454 .. 0.82

  Alignments for each domain:
  == domain 1    score: 47.0 bits;  conditional E-value: 6e-15
   TIGR02770  14 vlalvGesGsGksltalailglldkeltktsGeilldgkelaalalrgreialilqnPrsafnPlltikeqlletlkalekls..kqakelivealeavgLeeaeevl..kkypfelsGGmlqRvmialallleaplliaDePttdlDvvvqaevLklleelrekrglgillithD 185
                 + a++G+sG+Gk++   ai    +    +++G + ++g  +  l+  g++++++ q+ +   n l   ++ l ++l  l k+      +e++++ ++  gL++++  l  ++    lsGG  +Rv i + l++ +++l+ DePt+ lD ++ + + + l+ l +k+g++i+ + h 
  MMETSP1137-20121227|7163_1 257 MSAVMGASGCGKTTFMNAIATRAP--YGNVEGVVKINGV-VDGLEKAGNHVGFVPQDNIMHAN-LTVYQNLLYNALLRLPKTMetVVKEEQVARVIKVLGLSHVQDTLvgNEEKRGLSGGQKKRVNIGMELVMMPSILFMDEPTSGLDGAATIALARVLS-LLRKSGITIICVIHQ 427
                 5699***********999998877..67899******96.899999**********9987665.66667778888887777763344567899999999****9988833455678********************************999887666665.556789999999996 PP

>> TIGR03005  ectoine_ehuA: ectoine/hydroxyectoine ABC transporter, ATP-binding protein EhuA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.8   0.2   5.2e-14   3.7e-12      16     224 ..     245     447 ..     235     457 .. 0.68

  Alignments for each domain:
  == domain 1    score: 43.8 bits;  conditional E-value: 5.2e-14
   TIGR03005  16 ldglelevaaGekvaliGpsGsGkstilrilmtletid..eGsikvegeqlyhmkgrkGklvpadekhlrkvrekiGmvfqsfnlfphktvldnvteapvlv..kGvaraeaekravelldmvGladkadal.....paqlsGGqkqrvaiaralalrpkvllfdevtsaldpelveevlnvlrrlasetdltmllvthemgfa..refadrvlffdkGk 224
                 l+g++    +    a++G sG Gk+t +  + t  +    eG +k+           +G +       l+k  +++G+v q   +    tv +n+    +l   k ++    e++  ++++++Gl+  +d+l        lsGGqk+rv i   l + p +l++de+ts ld      +  vl  l  +  +t++ v h+ ++a  +ef+  +l+ + G+
  MMETSP1137-20121227|7163_1 245 LKGISGRFPPRSMSAVMGASGCGKTTFMNAIATRAPYGnvEGVVKI-----------NGVV-----DGLEKAGNHVGFVPQDNIMHANLTVYQNLLYNALLRlpKTMETVVKEEQVARVIKVLGLSHVQDTLvgneeKRGLSGGQKKRVNIGMELVMMPSILFMDEPTSGLDGAATIALARVL-SLLRKSGITIICVIHQPRWAvfKEFTHLLLLGEGGR 447
                 5555555555556666777777777777777666655311333333...........2322.....34667788999999988888888888887765543212566666667766777777777776666511111457********************************98776555555.5667889*********99885567777666666666 PP

>> TIGR01193  bacteriocin_ABC: ABC-type bacteriocin transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.8   0.0   1.9e-14   1.4e-12     485     684 ..     240     445 ..     205     463 .. 0.77

  Alignments for each domain:
  == domain 1    score: 44.8 bits;  conditional E-value: 1.9e-14
   TIGR01193 485 ygsevledislkikknekitlvGlsGsGkstlakllvk..ffqaesGeillngkslkdidkhelrqlinylPqePfifsG.silenlllgakenv..sqeeikkaveiaeikddiek..lplGyqtels.eeassisgGqkqrlalarallsdskvlildestsnld...lltekkivenllklkdktiifvah..rlsvakksdkiivldeG 684
                  g++vl+ is +    +  +++G sG Gk+t++  +     + + +G +++ng+ ++ ++k    +++ ++Pq+ ++ +  ++ +nll +a  ++  + e++ k  ++a     i+   l+   +t +  ee   +sgGqk+r+ +   l+    +l +de ts ld   ++   ++++ ll+ +  tii v h  r  v k+  +++ l eG
  MMETSP1137-20121227|7163_1 240 SGKRVLKGISGRFPPRSMSAVMGASGCGKTTFMNAIATraPYGNVEGVVKINGV-VDGLEKA--GNHVGFVPQDNIMHANlTVYQNLLYNALLRLpkTMETVVKEEQVAR---VIKVlgLSHVQDTLVGnEEKRGLSGGQKKRVNIGMELVMMPSILFMDEPTSGLDgaaTIALARVLS-LLRKSGITIICVIHqpRWAVFKEFTHLLLLGEG 445
                 47889999999999******************999875226999********96.7889886..589**********9765999****9997766114455555555555...5555005555677776256778********************************544455555554.66666889****995566777777777777665 PP

>> TIGR02769  nickel_nikE: nickel import ATP-binding protein NikE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.1   0.0   2.5e-14   1.8e-12       8     228 ..     226     447 ..     222     455 .. 0.75

  Alignments for each domain:
  == domain 1    score: 45.1 bits;  conditional E-value: 2.5e-14
   TIGR02769   8 vshtyrtggllgkkqrkavldnvslsleeGetvallGrsGaGkstlarlllGlekPakGevsfrGqdlakldr..kqrkafrrdvqlvfqdsisavnprksvreiigePlrhltsldeserkariaellelvelrs...evl.dklPrqlsGGqlqriniaralavePklivldeavsnldlvlqasilellkklkqefGlaylfithdlr..lvqkfaqrvlvldeGq 228
                 v  +++  gl+ kk+ k vl+++s         a++G sG+Gk+t+   +        G+v      + k+++  ++  +   +v +v qd i   n     +   +  lr  ++++   +++++a+++++++l++     + +   r lsGGq +r+ni   l + P ++ +de  s ld    +++ + l  l +++G++++ + h  r  + ++f++ +l+ ++G+
  MMETSP1137-20121227|7163_1 226 VEIEFEGVGLTLKKSGKRVLKGISGRFPPRSMSAVMGASGCGKTTFMNAIATR--APYGNVE----GVVKINGvvDGLEKAGNHVGFVPQDNIMHANLTVYQNLLYNALLRLPKTMETVVKEEQVARVIKVLGLSHvqdTLVgNEEKRGLSGGQKKRVNIGMELVMMPSILFMDEPTSGLDGAATIALARVLSLL-RKSGITIICVIHQPRwaVFKEFTHLLLLGEGGR 447
                 556677789999*****************9999*************9998754..3456653....2333333113445556789*******998887666555556666766778877788888888888777641103332566788********************************99888777777655.579*******99876213456666666666665 PP

>> TIGR02324  CP_lyasePhnL: phosphonate C-P lyase system protein PhnL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.6   0.2     6e-13   4.2e-11      26     208 ..     247     427 ..     236     435 .. 0.81

  Alignments for each domain:
  == domain 1    score: 40.6 bits;  conditional E-value: 6e-13
   TIGR02324  26 evsleveaGelvalsGksGaGkstllkslyanYlpesgrilvrhegeivdlvkaserevlevRrktigyvsqfLrviPRvsalevvaepllelGvereearakakellarlniperLWsl.aPatfsGGekqRvniaraliadrPiLLLdePtasLdaanrkvvvelikeakargaaligifhd 208
                  +s +     + a++G+sG Gk t++ ++ +     + + +v+  + +vd ++ +  +v  v + +i +    L v   +    ++  p +   v +ee  a++ ++l   ++ + L         sGG k+Rvni + l++   iL +dePt+ Ld a   +   +++ ++++g+++i ++h+
  MMETSP1137-20121227|7163_1 247 GISGRFPPRSMSAVMGASGCGKTTFMNAIATRAPYGNVEGVVKI-NGVVDGLEKAGNHVGFVPQDNIMHA--NLTVYQNLLYNALLRLPKTMETVVKEEQVARVIKVLGLSHVQDTLVGNeEKRGLSGGQKKRVNIGMELVMMPSILFMDEPTSGLDGAATIALARVLSLLRKSGITIICVIHQ 427
                 555555556677899***********999654333333334444.4467766777777899999999775..47788888888899999999999999999999999999999999976515678*****************777999***********9999********************7 PP

>> TIGR01288  nodI: nodulation ABC transporter NodI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.7   0.1   8.3e-13   5.9e-11      33     193 ..     258     426 ..     226     454 .. 0.79

  Alignments for each domain:
  == domain 1    score: 39.7 bits;  conditional E-value: 8.3e-13
   TIGR01288  33 fgllgpngagkstiarlvlglispdegkitvlgepvpararlarakigvvpqfdnldreftvrenllvfg..ry.fglstreieevipsllefarleskadvrvad.....lsggmkrrltlaralindpqllildepttgldpharhliwerlrsll.argktilltth 193
                   ++g  g+gk+t    +   ++  + +  v  + v      a  ++g vpq + ++ ++tv +nll     r   +++t   ee +  +++   l    d+ v +     lsgg k+r+ + + l+  p +l +dept+gld  a      r+ sll   g ti+   h
  MMETSP1137-20121227|7163_1 258 SAVMGASGCGKTTFMNAIATRAPYGNVEGVVKINGVVDGLEKAGNHVGFVPQDNIMHANLTVYQNLLYNAllRLpKTMETVVKEEQVARVIKVLGLSHVQDTLVGNeekrgLSGGQKKRVNIGMELVMMPSILFMDEPTSGLDGAATIA-LARVLSLLrKSGITIICVIH 426
                 568999********999999888777666677777888889999*********************98544112213567777788899999999999988888864444559*******************************988755.56666666156899988877 PP

>> TIGR01186  proV: glycine betaine/L-proline transport ATP binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.2   0.0   1.3e-12   9.3e-11      23     188 ..     259     426 ..     244     432 .. 0.77

  Alignments for each domain:
  == domain 1    score: 39.2 bits;  conditional E-value: 1.3e-12
   TIGR01186  23 viiGlsGsGkstlvrllnrliePtaGkilidGediaeisdaelrevrrkkiamviqkialfPhmtildnislg..lellkideq.erkekalealklvdleeyedryPde.....lsGGmqqrvGlaralaaePdlllmdeafsaldPlirdelqdelvklqkklqktivfith 188
                  ++G sG+Gk+t +  +        G++  +G+  ++   + l e     +++v q+  +    t+ +n+ +   l+l k  e   ++e+   ++k ++l + +d+   +     lsGG+++rv +   l + P +l+mde+ s ld      l    + l +k   ti+ + h
  MMETSP1137-20121227|7163_1 259 AVMGASGCGKTTFMNAIATR--APYGNV--EGVVKINGVVDGL-EKAGNHVGFVPQDNIMHANLTVYQNLLYNalLRLPKTMETvVKEEQVARVIKVLGLSHVQDTLVGNeekrgLSGGQKKRVNIGMELVMMPSILFMDEPTSGLDGAATIALARV-LSLLRKSGITIICVIH 426
                 68************988753..334443..5555555555667.778899********************997224454544431466777888999999888876532112344********************************9998888765.5666788899999988 PP

>> TIGR02323  CP_lyasePhnK: phosphonate C-P lyase system protein PhnK
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.4   0.1     0.002      0.14      21      51 ..     248     279 ..     231     292 .. 0.74
   2 !   28.3   0.0   3.4e-09   2.4e-07     139     224 ..     366     456 ..     349     464 .. 0.83

  Alignments for each domain:
  == domain 1    score: 9.4 bits;  conditional E-value: 0.002
   TIGR02323  21 vsf.lypGevlgivGesGsGkstllkalaarl 51 
                 +s  + p  + +++G sG Gk+t+++a+a+r 
  MMETSP1137-20121227|7163_1 248 ISGrFPPRSMSAVMGASGCGKTTFMNAIATRA 279
                 55523456677899***************975 PP

  == domain 2    score: 28.3 bits;  conditional E-value: 3.4e-09
   TIGR02323 139 paafsGGmqqrlqiarnlvtrprlvfm.eptGGl.vsvqarllllrglvrelglaviivth...lavarllaqrllvmkqGrvvesGltrv 224
                  + +sGG ++r++i  +lv  p ++fm ept Gl  +    l  + +l+r+ g+++i v h    av + +++ ll+ + Gr v  G + +
  MMETSP1137-20121227|7163_1 366 KRGLSGGQKKRVNIGMELVMMPSILFMdEPTSGLdGAATIALARVLSLLRKSGITIICVIHqprWAVFKEFTHLLLLGEGGRQVYCGEAGL 456
                 5779******************************5444444446778999**********9777799999999999999999887765544 PP

>> TIGR03269  met_CoM_red_A2: methyl coenzyme M reductase system, component A2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.7   0.0    0.0035      0.24       6      59 ..     235     288 ..     230     295 .. 0.91
   2 !   27.1   0.0   4.5e-09   3.2e-07     143     250 ..     341     451 ..     311     463 .. 0.76

  Alignments for each domain:
  == domain 1    score: 7.7 bits;  conditional E-value: 0.0035
   TIGR03269   6 ltkkfdglevlknisleleeGevlGilGksGaGksvllhllrGldeyeptsGki 59 
                 lt k  g++vlk is ++    +  ++G sG+Gk+ +++ +     y + +G +
  MMETSP1137-20121227|7163_1 235 LTLKKSGKRVLKGISGRFPPRSMSAVMGASGCGKTTFMNAIATRAPYGNVEGVV 288
                 67788999*********************************9999999999966 PP

  == domain 2    score: 27.1 bits;  conditional E-value: 4.5e-09
   TIGR03269 143 keavkravelleevklehrit..hiardlsGGekqrvvlarqlakeplllladeptGtldpktaklvhealkeavkeedislvltshwpe..viedlsdkaillekGeivee 250
                 +e v r +++l   +++  ++     r lsGG+k+rv +  +l+  p +l+ dept  ld   a +    +    ++++i+++   h p+  v+++ ++  +l e G  v  
  MMETSP1137-20121227|7163_1 341 EEQVARVIKVLGLSHVQDTLVgnEEKRGLSGGQKKRVNIGMELVMMPSILFMDEPTSGLDGA-ATIALARVLSLLRKSGITIICVIHQPRwaVFKEFTHLLLLGEGGRQVYC 451
                 4567777777777777776652235799********************************85.6677777888999*********999854377777766666666655555 PP

>> TIGR02633  xylG: D-xylose ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.7   1.1   4.1e-11   2.9e-09     291     459 ..     260     424 ..     256     446 .. 0.80

  Alignments for each domain:
  == domain 1    score: 33.7 bits;  conditional E-value: 4.1e-11
   TIGR02633 291 vaGlvGaGrtelvqalfGayp.GkfegevfldgkqvdirnpaqairagialvpedrkrdGivpvlgvGknitlavlkkfakksrideaaelkaieeeikrlkvktaspdl....piarlsGGnqqkavlakllllnprvlildeptrGvdvGakyeiyklinqlaqeGvaiivv 459
                 v G  G+G+t  ++a+    p G++eg v ++g      + ++   + + +vp+d   +   ++l+v +n+   +l +  k+++     +++ + + ik l +  ++  l       +lsGG++++  +   l++ p +l +dept G+d  a   + ++++ l + G++ii v
  MMETSP1137-20121227|7163_1 260 VMGASGCGKTTFMNAIATRAPyGNVEGVVKINGV----VDGLEKAGNHVGFVPQDNIMH---ANLTVYQNLLYNALLRLPKTMET--VVKEEQVARVIKVLGLSHVQDTLvgneEKRGLSGGQKKRVNIGMELVMMPSILFMDEPTSGLDGAATIALARVLSLLRKSGITIICV 424
                 78999**********98765559********995....34555667889******8776...6899**********999885443..3333445566666666555555511115678****9999999999***************************************987 PP

>> TIGR01192  chvA: glucan exporter ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.4   0.0   1.4e-11     1e-09     275     535 ..     172     435 ..     148     457 .. 0.74

  Alignments for each domain:
  == domain 1    score: 35.4 bits;  conditional E-value: 1.4e-11
   TIGR01192 275 viafigfanlligrldqlkafvtqivear.akledffdledsvkereepadarelknvkgavefrdisfefanssqgv.rdvsfeakagqtvaivgptgagkttlinllq.r.vydpksgqilidgvdiatvtreslrksiatvfqdagl.lnrsireni...rlgredatdeevveaakaaaasdfiekrlkgydtlvgergnr.lsggerqrlaiarailknapilvldeatsaldvetearvkdaidalrknrttfi.iah..rlstvre 535
                  i ++ +  ll+g    + +  +q +ear a l+       ++++ +  +   e k+ + ++ef+ +   +  s + v + +s +       a++g +g gktt++n +  r  y   +g + i+gv ++ +++    + +  v qd  +  n ++ +n+    l r   t e vv+  + a         ++  dtlvg+  +r lsgg+++r+ i   ++    il +de ts ld  + + +   +  lrk   t+i + h  r +  +e
  MMETSP1137-20121227|7163_1 172 FIIIVALVVLLLGSY-CMAKRRNQKMEARsAALRSQ----YAAQDVNSIGGEYEHKAESVEIEFEGVGLTLKKSGKRVlKGISGRFPPRSMSAVMGASGCGKTTFMNAIAtRaPYGNVEGVVKINGV-VDGLEKA--GNHVGFVPQDNIMhANLTVYQNLlynALLRLPKTMETVVKEEQVARVIKV-LGLSHVQDTLVGNEEKRgLSGGQKKRVNIGMELVMMPSILFMDEPTSGLDGAATIALARVLSLLRKSGITIIcVIHqpRWAVFKE 435
                 333344444455544.35556677777762445444....456667777777888888999**********99977662679*99999999****************87524258999999999998.6677665..57889999998762578999998444577888999999998888877765.5567888*****877665************************************************9999872334334555555 PP

>> TIGR03719  ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.5   0.0   5.7e-08     4e-06     160     217 ..     367     427 ..     325     453 .. 0.78

  Alignments for each domain:
  == domain 1    score: 23.5 bits;  conditional E-value: 5.7e-08
   TIGR03719 160 eklsGGekrrvalcrlllekPdlllldePtnhldaesvaWlekflk...eykGtvvavthd 217
                   lsGG+k+rv +   l+  P +l++dePt  ld  +   l + l+   +   t+++v h 
  MMETSP1137-20121227|7163_1 367 RGLSGGQKKRVNIGMELVMMPSILFMDEPTSGLDGAATIALARVLSllrKSGITIICVIHQ 427
                 5699999999999999999999999999999999888777877665110334477777775 PP

>> TIGR00630  uvra: excinuclease ABC subunit A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.2   0.0   0.00011    0.0078     583     658 ..     210     280 ..     158     305 .. 0.79
   2 !   20.2   0.1   4.2e-07     3e-05     815     908 ..     351     446 ..     333     451 .. 0.75

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 0.00011
   TIGR00630 583 kkkesltgqYlsgkkkievPkerrkaegkvltlkgakennlkdidvsiplglltvitGvsgsGkstLindiLvkal 658
                 ++ +s+ g+Y ++ +++e+     + eg  ltlk++ +  lk i+ ++p   + ++ G sg Gk t++n i ++a 
  MMETSP1137-20121227|7163_1 210 QDVNSIGGEYEHKAESVEI-----EFEGVGLTLKKSGKRVLKGISGRFPPRSMSAVMGASGCGKTTFMNAIATRAP 280
                 4445555555555555554.....5567789**************************************9987765 PP

  == domain 2    score: 20.2 bits;  conditional E-value: 4.2e-07
   TIGR00630 815 vGLgYik...lGqp.attLsGGeaqrvkLakeLskrstgktlyilDePttGLhfdDikkLlevlqrlvdkGntvvviehn..ldviksaDyiidlGPeGG 908
                 +GL +++   +G++    LsGG  +rv + +eL        +  +DePt GL  +    L +vl  l ++G t++ + h     v k+  +++ lG eGG
  MMETSP1137-20121227|7163_1 351 LGLSHVQdtlVGNEeKRGLSGGQKKRVNIGMELVM---MPSILFMDEPTSGLDGAATIALARVLSLLRKSGITIICVIHQprWAVFKEFTHLLLLG-EGG 446
                 4555554333565415679*************975...5678899*********9999***************99999863357888888888777.455 PP

>> TIGR00957  MRP_assoc_pro: multi drug resistance-associated protein (MRP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.6   0.0   9.4e-11   6.6e-09     635     793 ..     226     401 ..     200     412 .. 0.77

  Alignments for each domain:
  == domain 1    score: 31.6 bits;  conditional E-value: 9.4e-11
   TIGR00957 635 nsitvknatftwardepptlngltlsipegalvavvgqvgcgkssllsall..aemdkvegkvalkgs..........vayvpqqawi.qndslrenilfgkale.ekyykavleacalladlei..lpsgdrteig.ekgvnlsggqkqrvslaravysdadiyllddplsavda 793
                   i  +   +t  ++    l+g++ + p  ++ av+g  gcgk++++ a+   a   +veg v+++g           v +vpq+  +  n ++ +n+l+   l+ +k  ++v++   +   +++  l   + t +g e    lsggqk+rv +   +     i ++d+p s +d 
  MMETSP1137-20121227|7163_1 226 VEIEFEGVGLTLKKSGKRVLKGISGRFPPRSMSAVMGASGCGKTTFMNAIAtrAPYGNVEGVVKINGVvdglekagnhVGFVPQDNIMhANLTVYQNLLYNALLRlPKTMETVVKEEQVARVIKVlgLSHVQDTLVGnEEKRGLSGGQKKRVNIGMELVMMPSILFMDEPTSGLDG 401
                 5566666778888999999****************************99872255789******99962222222223579***98772589**********99835566677755444444444115566677787356678*****************************9996 PP

>> TIGR03415  ABC_choXWV_ATP: choline ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.0   0.3   3.2e-09   2.2e-07      53     228 ..     258     431 ..     247     455 .. 0.69

  Alignments for each domain:
  == domain 1    score: 28.0 bits;  conditional E-value: 3.2e-09
   TIGR03415  53 lvlmGlsGsGkssllravnglnpvsrGkvl.vkdedkevdvakcdeatlrklrtkrvsmvfqkfallPWrtveenvafG..lel.sGvakaerrkrveeqlelvglaeWadkkvge.....lsGGmqqrvGlarafateadillmdePfsaldPliraklqdellelqkklkktivfvshdldea 228
                 + +mG sG Gk++++ a+   +p    +v+ v + ++ vd  +           ++v  v q   +   +tv +n+ +   l l + +    + ++v++ ++++gl++ +d+ vg+     lsGG ++rv +   + +   il+mdeP s ld      l   +l+l +k   ti+ v h    a
  MMETSP1137-20121227|7163_1 258 SAVMGASGCGKTTFMNAIATRAPYG--NVEgVVKINGVVDGLEKAG--------NHVGFVPQDNIMHANLTVYQNLLYNalLRLpKTMETVVKEEQVARVIKVLGLSHVQDTLVGNeekrgLSGGQKKRVNIGMELVMMPSILFMDEPTSGLDGAATIALA-RVLSLLRKSGITIICVIHQPRWA 431
                 5689999999999999999888864..4432444556666554443........4566666666666666777666554223332345555566677777777888877776654223444********************************99988886.67888899999999999976554 PP

>> TIGR00954  3a01203: peroxysomal long chain fatty acyl transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.5   0.0     5e-08   3.5e-06     420     656 ..     193     445 ..     180     449 .. 0.79
   2 ?   -1.7   0.2       2.2   1.6e+02      99     142 ..     638     681 ..     624     696 .. 0.87

  Alignments for each domain:
  == domain 1    score: 23.5 bits;  conditional E-value: 5e-08
   TIGR00954 420 krprveekesaeee..srkselvagrgkveaqdngikfeniplvtP.egdvlieeLsfevksGnhlLiiGPnGcGKsslfRilgelWPvyg........gllt..kpeegklFyvPqrPYmslg.tlRdqiiYPd..ssedfkerglsdkdLeqiLeevkLedllereggwdavqdWkdvLsgGekqRiamARlfyHkPkfavLDEctsAv...svdvEdklyelakevgitllsvshrksLwky..HeylLkldgkG 656
                 ++ ++++++  +++  +++ + + g+ + +a+   i fe + l    +g+ +++ +s + +  +   ++G  GcGK  ++  ++   P  +        g+      + +++ +vPq   m    t+ + ++Y    +  + +e  ++++++ ++++++ L+++ +  +g +     k  LsgG+k+R+++   +   P    +DE ts +   +     ++ +l+++ git++ v h++    +   ++lL l+ +G
  MMETSP1137-20121227|7163_1 193 NQKMEARSAALRSQyaAQDVNSIGGEYEHKAESVEIEFEGVGLTLKkSGKRVLKGISGRFPPRSMSAVMGASGCGKTTFMNAIATRAPYGNvegvvkinGVVDglEKAGNHVGFVPQDNIMHANlTVYQNLLYNAllRLPKTMETVVKEEQVARVIKVLGLSHVQDTLVGNEE----KRGLSGGQKKRVNIGMELVMMPSILFMDEPTSGLdgaATIALARVLSLLRKSGITIICVIHQPRWAVFkeFTHLLLLG-EG 445
                 33333333333333337778888888888899999*******988758999**********99999**********************888998999994443114567899**********999********972244566777899****************999999765....778************99999************763312223468899**************88655550045555554.33 PP

  == domain 2    score: -1.7 bits;  conditional E-value: 2.2
   TIGR00954  99 ilqavlLviRtllsvyvakldgqlvksivrrsprsFakellkwl 142
                 +++ +++ i+t++ v+v   + +    i++   ++F  + + w 
  MMETSP1137-20121227|7163_1 638 VAIFFAMTIKTYATVFVKAFAFSFITYILASPLQNFVVYFVSWY 681
                 56778999*********************999999999999885 PP

>> TIGR03348  VI_IcmF: type VI secretion protein IcmF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.0     2e-05    0.0014      30     130 ..     168     274 ..     158     293 .. 0.75

  Alignments for each domain:
  == domain 1    score: 14.4 bits;  conditional E-value: 2e-05
   TIGR03348  30 svlarlliiavlllvwalwllirlwrak..rkaqalleelaaeekekqdaaaeaeiaelearlkealallkksrlk......krrylyelPWYlviGppGsGKTtllkn 130
                 +v+a ++i+a+++l+++ ++++++ ++k   + +al+++ aa++ ++   + e +++ +e +++ +  +lkks ++      +r   + +    v+G++G+GKTt ++ 
  MMETSP1137-20121227|7163_1 168 PVAAFIIIVALVVLLLGSYCMAKRRNQKmeARSAALRSQYAAQDVNSIGGEYEHKAESVEIEFEGVGLTLKKSGKRvlkgisGRFPPRSM--SAVMGASGCGKTTFMNA 274
                 5677889999999999999997777666445666677777777777777777799999***************98886455422222222..469**********9875 PP

>> TIGR01271  CFTR_protein: cystic fibrosis transmembrane conductor regulator (CFTR)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.2   0.0   6.5e-05    0.0046    1224    1397 ..     234     412 ..     195     450 .. 0.73

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 6.5e-05
   TIGR01271 1224 takyteagravlqdlsfsveagqrvgllgrtgsgkstllsallrll...stegeiqidgvswnsvtlqkwrkafgvipqkvfil.sgtfrknldpyeqys.deeiwkvaeevglksvieqfp.dkldfvlv..dggyvlsnghkqlmclarsilskakillldepsafldpvtlqiirktlk 1397
                       ++g+ vl+ +s    +     ++g +g+gk+t++ a+   +   + eg ++i+gv      l+k     g +pq  ++    t  +nl   +     + +  v +e  +  vi+ +   +++  lv  +    ls g k+ + +   ++    il++dep++ ld  +   + + l 
  MMETSP1137-20121227|7163_1  234 GLTLKKSGKRVLKGISGRFPPRSMSAVMGASGCGKTTFMNAIATRApygNVEGVVKINGVVD---GLEKAGNHVGFVPQDNIMHaNLTVYQNLLYNALLRlPKTMETVVKEEQVARVIKVLGlSHVQDTLVgnEEKRGLSGGQKKRVNIGMELVMMPSILFMDEPTSGLDGAATIALARVLS 412 
                  44455789********************************99764433389********964...69999999*****9866551458888886555433145556666666666666655323333333311455679******************************9876666666554 PP

>> TIGR02788  VirB11: P-type DNA transfer ATPase VirB11
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   0.00024     0.017     149     216 ..     260     330 ..     254     334 .. 0.74

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 0.00024
   TIGR02788 149 isGgtgsgKTTflkalvkliP..keeRlitiedteElklkhpNkvhLlyske.gqgsakvtakdllescLR 216
                 ++G++g gKTTf++a+    P  + e ++ i+ + +   k  N+v  + + +  + + +v ++ l ++ LR
  MMETSP1137-20121227|7163_1 260 VMGASGCGKTTFMNAIATRAPygNVEGVVKINGVVDGLEKAGNHVGFVPQDNiMHANLTVYQNLLYNALLR 330
                 89*****************9944468899999999888888999987776663333444444444555566 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (870 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       255  (0.0621648); expected 82.0 (0.02)
Passed bias filter:                      182  (0.0443686); expected 82.0 (0.02)
Passed Vit filter:                        94  (0.0229157); expected 4.1 (0.001)
Passed Fwd filter:                        58  (0.0141394); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              58  [number of targets reported over threshold]
# CPU time: 1.60u 0.20s 00:00:01.80 Elapsed: 00:00:01.58
# Mc/sec: 726.78
//
Query:       MMETSP1137-20121227|7167_1  [L=721]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (721 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        84  (0.0204778); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.16s 00:00:00.59 Elapsed: 00:00:00.55
# Mc/sec: 1730.26
//
Query:       MMETSP1137-20121227|7168_1  [L=157]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (157 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       137  (0.0333983); expected 82.0 (0.02)
Passed bias filter:                      104  (0.0253535); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.17s 00:00:00.36 Elapsed: 00:00:00.25
# Mc/sec: 828.89
//
Query:       MMETSP1137-20121227|7169_1  [L=60]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        67  (0.0163335); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.15s 00:00:00.25 Elapsed: 00:00:00.25
# Mc/sec: 316.77
//
Query:       MMETSP1137-20121227|7170_1  [L=100]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (100 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       112  (0.0273038); expected 82.0 (0.02)
Passed bias filter:                      101  (0.0246221); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.14s 00:00:00.28 Elapsed: 00:00:00.28
# Mc/sec: 471.39
//
Query:       MMETSP1137-20121227|7172_1  [L=220]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (220 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        93  (0.0226719); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.16s 00:00:00.38 Elapsed: 00:00:00.34
# Mc/sec: 854.05
//
Query:       MMETSP1137-20121227|7173_1  [L=45]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (45 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        33  (0.00804486); expected 82.0 (0.02)
Passed bias filter:                       33  (0.00804486); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.17s 00:00:00.28 Elapsed: 00:00:00.24
# Mc/sec: 247.48
//
Query:       MMETSP1137-20121227|7174_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        17  (0.00414432); expected 82.0 (0.02)
Passed bias filter:                       17  (0.00414432); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.17s 00:00:00.29 Elapsed: 00:00:00.32
# Mc/sec: 218.61
//
Query:       MMETSP1137-20121227|7175_1  [L=131]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (131 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        57  (0.0138957); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:00.37
# Mc/sec: 467.31
//
Query:       MMETSP1137-20121227|7176_1  [L=447]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (447 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       105  (0.0255973); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.16s 00:00:00.49 Elapsed: 00:00:00.34
# Mc/sec: 1735.27
//
Query:       MMETSP1137-20121227|7178_1  [L=201]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (201 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        86  (0.0209654); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.14s 00:00:00.33 Elapsed: 00:00:00.27
# Mc/sec: 982.59
//
Query:       MMETSP1137-20121227|7179_1  [L=63]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (63 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        38  (0.00926377); expected 82.0 (0.02)
Passed bias filter:                       37  (0.00901999); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.26
# Mc/sec: 319.82
//
Query:       MMETSP1137-20121227|7181_1  [L=101]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       123  (0.0299854); expected 82.0 (0.02)
Passed bias filter:                      112  (0.0273038); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.17s 00:00:00.32 Elapsed: 00:00:00.45
# Mc/sec: 296.24
//
Query:       MMETSP1137-20121227|7182_1  [L=213]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (213 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        64  (0.0156021); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.17s 00:00:00.37 Elapsed: 00:00:00.25
# Mc/sec: 1124.55
//
Query:       MMETSP1137-20121227|7183_1  [L=167]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (167 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.15s 00:00:00.32 Elapsed: 00:00:00.38
# Mc/sec: 580.06
//
Query:       MMETSP1137-20121227|7184_1  [L=123]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (123 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        63  (0.0153584); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.13s 00:00:00.27 Elapsed: 00:00:00.28
# Mc/sec: 579.81
//
Query:       MMETSP1137-20121227|7186_1  [L=428]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (428 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       106  (0.0258411); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.14s 00:00:00.45 Elapsed: 00:00:00.41
# Mc/sec: 1377.84
//
Query:       MMETSP1137-20121227|7188_1  [L=164]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (164 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        77  (0.0187713); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.18s 00:00:00.35 Elapsed: 00:00:01.03
# Mc/sec: 210.16
//
Query:       MMETSP1137-20121227|7189_1  [L=99]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (99 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       160  (0.0390054); expected 82.0 (0.02)
Passed bias filter:                      117  (0.0285227); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.22s 00:00:00.34 Elapsed: 00:00:00.34
# Mc/sec: 384.32
//
Query:       MMETSP1137-20121227|7190_1  [L=391]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (391 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       104  (0.0253535); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.23s 00:00:00.44 Elapsed: 00:00:00.33
# Mc/sec: 1563.87
//
Query:       MMETSP1137-20121227|7191_1  [L=60]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        69  (0.0168211); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:00.39
# Mc/sec: 203.06
//
Query:       MMETSP1137-20121227|7192_1  [L=232]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (232 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        50  (0.0121892); expected 82.0 (0.02)
Passed bias filter:                       44  (0.0107265); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.12s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 1055.91
//
Query:       MMETSP1137-20121227|7194_1  [L=286]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.1e-21   73.5   0.0    4.5e-21   72.9   0.0    1.2  1  TIGR02024 FtcD: glutamate formiminotransferase


Domain annotation for each model (and alignments):
>> TIGR02024  FtcD: glutamate formiminotransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.9   0.0   1.1e-24   4.5e-21      27     209 ..      10     201 ..       2     213 .. 0.81

  Alignments for each domain:
  == domain 1    score: 72.9 bits;  conditional E-value: 1.1e-24
   TIGR02024  27 ikkvdnvklldvdsdadhnrsvitlvgepekvveaalklakvaaelidlsk..hkGehPrmGavdviPfvPvkdvt.......veecvelakelGkrlgeelgvPvylyeeaaekeerktlaairkgey.ealkeklkea...kWkPdfGPsevnpkaGatavGarkfliafnvnldtsnleiakkiakavrekgg 209
                 ++  + v l+dv +d    rs + lvge+  +++aa  +a  a++lidl++  h   hPr Gavd++ f+P+++ +       + +c  la +lG  lg + g  v ly+       r  l a r+  +  +++    +    +  Pd GP e + +aG+++vGa + +  fnv ++   l  +k+ a a+r++ g
  MMETSP1137-20121227|7194_1  10 AAAFPAVSLVDVFTDDTYARSSLKLVGETGPLLQAARLAALEAVRLIDLQNepHPAPHPRCGAVDMVAFMPLSEASatdlapeLRTCEDLATQLGVSLG-DAGCSVLLYGPQR---GRTLLEARRHTSFfKSVRADAPNRvclHVPPDAGPAEPSQRAGVSVVGAMTYVTNFNVQIESASLTECKAAATALRTAMG 201
                 456789*******************************************977799*****************99862222222458999**********.99*******9643...344444444443313333333222222467**********************************************9765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (286 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        72  (0.0175524); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.23u 0.15s 00:00:00.38 Elapsed: 00:00:00.62
# Mc/sec: 608.85
//
Query:       MMETSP1137-20121227|7195_1  [L=74]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (74 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        41  (0.00999512); expected 82.0 (0.02)
Passed bias filter:                       37  (0.00901999); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:00.33
# Mc/sec: 295.98
//
Query:       MMETSP1137-20121227|7197_1  [L=885]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   1.2e-171  570.6   0.0   1.5e-171  570.3   0.0    1.0  1  TIGR01069 mutS2: MutS2 family protein
    4.9e-26   89.1   4.0    2.1e-25   87.0   2.8    1.9  1  TIGR01070 mutS1: DNA mismatch repair protein MutS


Domain annotation for each model (and alignments):
>> TIGR01069  mutS2: MutS2 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  570.3   0.0  7.3e-175  1.5e-171       5     771 .]      77     885 .]      74     885 .] 0.91

  Alignments for each domain:
  == domain 1    score: 570.3 bits;  conditional E-value: 7.3e-175
   TIGR01069   5 tLakLefdkvkeqllkfaatplgkvka.leLkppksveeskellekekalesien....nvrlkglaDireaLkraelgeivkgleeilkianvlkkvkelk.rlaeerqdleilskllaelitLselendikelidddgkvkdeaseeldeireslkaleeevkkrlekiirrkeaakyLsdtivtirndrfvlpvKsgykekikGivhdtSssGetlYvePqaivelnnklaqlkrkeeeeiekilrqlsekva..eylleLeellkeltelDllqararyakavkaefpeistt..kvielkearHPlLkesk.........vvpvtlelksekrviiiTGpNtGGKTvtLKtlgllalmaksgipipake......ss.....elplFeeifadIgDeQsieqnlSTFsshmkniseiLkkldensLvllDElgaGTDpdegsaLaislLeklakqnalvlitTHykelkalkyeseevenasvefDeetlsPtYklligvpGrSyAfeiaqrlglpseiiekAkeklgeekeeinkviekleekekeleekaeelekllkeleklkkeleqkakelkererklkkelekeaqealkaakkeveeiirelkekkiekakekk...atell.....kklk.....eekakvpqkpknlqad..kvGdkvkvesfgqk.gkvvevkkgkkvnvtvgllklkvkeselekink.appkkkekvpkkvkake.......keesltldlrGerseeAlsrlekflddallaGyekvkiiHGkGsGkLrkgVkelLknhkkvksyrfaeaneGGsGvtivkLk 771
                 tL +Le++++  q++ fa t  g+ ++  +L  p++  es+ l +++ ++  ie+     ++l g+ D r aL   el  +   l      a +++ +++++ + ++++q+l++l  l   +++  el ++ik+ +d+ g v+d a + l+e+r+ +++l    + +l  +++rk   ++L ++ +t r+ rfv+ v ++ ++ ++G+v d Ss G tlYveP+++  +n kl+ql ++ee +i+ +l+ ls++v   ++  e+++l ++++++Dl++arary+ ++ a+++ ++    + ++l ++   +L+++          vvp +  ++  krv +iTGpNtGGKTv+LKtlgl+alma+ g+ ++ ++      +s     ++p+F++++adIgD+Qsi q+lSTFs+h+ ++ +iL++++ nsLvllDE+gaGTDp+egsaL+ ++L+ la + al + tTH++ lk lky + ++ena vefD+  l PtY+ll+g+pGrS+A++ia+rlg+ +e+++ A   l +++e + +v++ ++e++ e++   +el  l+ e+   ++++  +ake+  +e++l  ++    +  l+aak ++  ++ e++ ++     +k+   +++ l     +          ++ +p+++ +   d   vGd v v   g++ +kv ev+k k+++vt g ++++vk se+  + k + p++    pkk k+ +       + +s+ ldlrG+r+ e  ++l +++d al+ G   + +iHG+G+G +rk V+e+L + ++v  +++a+ +eGG G ti++L+
  MMETSP1137-20121227|7197_1  77 TLELLEWPRLSRQVAAFASTRQGRAAIgAGLAVPADQAESETLQQETAEAHFIEQqlnrPIELRGFGDXRAALTGSELSTVCESLA---TAATLIRSFRDIQaEETQDTQRLQLLPALFDGIPEQAELRRAIKDAVDESGSVRDTAAASLGELRFAIRELSA-XEAELTALMQRK--GDALASRTITRRDSRFVIQVPAKQRHLVPGVVRDVSSTGLTLYVEPKQVEAANTKLRQLAKREEAIINAVLKALSQRVGapKVSSEMQQLDAAVVRVDLATARARYSAKMRATPVVFGSLrhEGLRLDQMFTXMLVWKGdgaapnisnVVPQDYVMDVSKRVAVITGPNTGGKTVALKTLGLAALMARAGLWVVSGAgrrgdsTSaptpiRMPYFDKVMADIGDDQSIVQSLSTFSAHVARVQAILQQVTRNSLVLLDEVGAGTDPTEGSALGTAVLRRLAATAALAVCTTHHGSLKTLKYSDPRFENACVEFDDVALAPTYRLLWGIPGRSNAIAIARRLGMQREVVDDADALL-NDGELVXQVVAAMQEEQEEQRALSAELSALRDEAAATRDAMAAQAKEQARAEQQLMAQQRAALEAELEAAKAQIRALLDEARSGNADGSAQKQaslSQQKLsrigkQ--AfqtveADQQGAPERKVEASLDdiSVGDLVLVARLGDSpVKVDEVQK-KQLVVTFGGFRMNVKISEVLEVTKpKAPPQPASSPKKAKVANkrertavRLASNSLDLRGMRVAEVGDKLVQAVDRALEMG--TLYVIHGRGTGSMRKYVREVLAEEPMVERFEDAPESEGGNGCTIAYLR 885
                 899*********************999568**********99999999999999977666789***************99988777...889999*******777889999*************************************************75.6899********..******************************************************************************74468899*******************************987889**************9999****************************************************9754222211223333379*******************************************************************************************************************************************7655.799********************************************************************************996543333300022333444441..2445436677788888888877799*********9987589999*99.******************999998855555555566666555567777899******************************..**********************************************96 PP

>> TIGR01070  mutS1: DNA mismatch repair protein MutS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.0   2.8     1e-28   2.1e-25     579     803 ..     394     626 ..     145     661 .. 0.69

  Alignments for each domain:
  == domain 1    score: 87.0 bits;  conditional E-value: 1e-28
   TIGR01070 579 eefvandleladnrelllitGPnmsGkstylrqtaliallaqiGsfvPa........ek....aelpliDriftriGaaDDLasGrstfmvemeevanilkeatensLvLlDevGrGtstyDGlalaqaiaealhekiraltLfathYfeLtaLeekleklknvhvaaleengtvvflhkvkeGaasksYGlavaalaglPkeviararekLkeleassskseaplreaqkketeql 803
                 ++ v+ d  ++  +++ +itGPn +Gk   l+ + l al+a+ G +v +         +    +++p +D++ + iG    ++   stf   +  v+ il++ t+nsLvLlDevG Gt   +G al +a+   l+    al++ +th+  L +L+ + ++ +n  v+    +  ++  ++++ G   +s  +a+a+  g+ +ev++ a+++L++ e   +   a ++e q+++++  
  MMETSP1137-20121227|7197_1 394 SNVVPQDYVMDVSKRVAVITGPNTGGKTVALKTLGLAALMARAGLWVVSgagrrgdsTSaptpIRMPYFDKVMADIGDDQSIVQSLSTFSAHVARVQAILQQVTRNSLVLLDEVGAGTDPTEGSALGTAVLRRLAA-TAALAVCTTHHGSLKTLKYSDPRFENACVEFD--DVALAPTYRLLWGIPGRSNAIAIARRLGMQREVVDDADALLNDGELVXQVV-AAMQEEQEEQRALS 626
                 3467888899************************************9642222222112222258999*******************************************************************9.99************************998765..55789999*********************************9888775444.34444444432222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (885 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       347  (0.0845929); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.68u 0.16s 00:00:00.84 Elapsed: 00:00:00.52
# Mc/sec: 2246.35
//
Query:       MMETSP1137-20121227|7198_1  [L=90]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (90 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        43  (0.0104827); expected 82.0 (0.02)
Passed bias filter:                       41  (0.00999512); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.18s 00:00:00.30 Elapsed: 00:00:00.25
# Mc/sec: 475.16
//
Query:       MMETSP1137-20121227|7199_1  [L=244]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (244 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        78  (0.0190151); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.16s 00:00:00.37 Elapsed: 00:00:00.36
# Mc/sec: 894.59
//
Query:       MMETSP1137-20121227|7201_1  [L=104]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (104 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        76  (0.0185275); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.16s 00:00:00.31 Elapsed: 00:00:00.32
# Mc/sec: 428.96
//
Query:       MMETSP1137-20121227|7202_1  [L=97]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0013   15.8   0.0     0.0014   15.6   0.0    1.0  1  TIGR00425 CBF5: putative rRNA pseudouridine synthase
  ------ inclusion threshold ------
      0.023   12.8   0.0      0.026   12.6   0.0    1.1  1  TIGR00451 unchar_dom_2: uncharacterized domain 2


Domain annotation for each model (and alignments):
>> TIGR00425  CBF5: putative rRNA pseudouridine synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0     7e-07    0.0014     237     305 ..      11      80 ..       3      93 .. 0.90

  Alignments for each domain:
  == domain 1    score: 15.6 bits;  conditional E-value: 7e-07
   TIGR00425 237 lkrvvvkdsavdaicyGadlavrGlakledgiekedtvvvitlkgeavavgkalmstkdiaaad.kGvvv 305
                   +v +k sa ++  yG ++   Gl ++ ++  +++ vvv+++ +  ++ g a  st++  ++d +G+v+
  MMETSP1137-20121227|7202_1  11 QYKVWLKPSAEQSFLYGNHVLKAGLGRITEDTPQYQGVVVLSMSDVPLGFGVAAKSTAECRKLDpQGIVA 80 
                 458999******************************************************9999568876 PP

>> TIGR00451  unchar_dom_2: uncharacterized domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   1.3e-05     0.026      36      94 ..      17      74 ..       4      84 .. 0.83

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 1.3e-05
   TIGR00451 36 degavkFllngadvlkPGiveadedikekdvvvvvdenkdralavGialvsgeeikeve 94
                +  a +  l g  vlk G+  ++ed ++ + vvv     d +l+ G+a  s+ e ++ +
  MMETSP1137-20121227|7202_1 17 KPSAEQSFLYGNHVLKAGLGRITEDTPQYQGVVVLSMS-DVPLGFGVAAKSTAECRKLD 74
                5555555667999*****************99999888.9************9998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (97 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        78  (0.0190151); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.15u 0.16s 00:00:00.31 Elapsed: 00:00:00.35
# Mc/sec: 365.80
//
Query:       MMETSP1137-20121227|7203_1  [L=920]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      1e-73  246.2   0.0    1.5e-73  245.6   0.0    1.1  1  TIGR01982 UbiB: 2-polyprenylphenol 6-hydroxylase
     0.0016   15.4   0.0      0.014   12.4   0.0    2.1  2  TIGR02721 ycfN_thiK: thiamine kinase


Domain annotation for each model (and alignments):
>> TIGR01982  UbiB: 2-polyprenylphenol 6-hydroxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  245.6   0.0   7.5e-77   1.5e-73      39     433 ..     233     635 ..     206     637 .. 0.88

  Alignments for each domain:
  == domain 1    score: 245.6 bits;  conditional E-value: 7.5e-77
   TIGR01982  39 skeearkeslgerlrlaleelGPifiKlGQvlstRaDllpeeiaeeLslLqdkvppfdlkaarkvieaelgkpve.....elFaefeekPlAaASiaQvhkAvlvegkeVavKvlRPgiekkieadikllellaklvekllpeakrlrptevvkefektlkeEldlrlEaanaselkenfkndk...klivPevyweltservltlewidgipvsdleklkeaGldlkalaenlvesflkqvlrdgfFHaDlHpGNilvakdgkiialDfGivgrlseeerrylaeillgflerdykrvaevhleagyvpsdtdlaeleqa.iravgepiv....gkplkeisigklLaklfkitekfe..levqpeLlLLqKtlltvEGvgrqldpdldlwkvaepvvkklikkklspk 433
                 ++ +a+ ++++e+l +al+elGP+ iK+GQ ls RaDl+p  ++e L+ Lqd+vp+f+  +ar+ i++el+ + +      lF++++++P+AaAS++Qv++ vl++g+eVavKv+RP++ + i+ d+ ll++lak  ++  +     + + +v++  +   +Eld+++Eaan++ + + +++ +    ++ Pev+ el ++rvlt+ w++g  ++      ++  d ++l    ++  l++ l+ g+ H D+HpGN+l ++dg++ +lD G+v +l++e +  + e +  +  +dy++v   ++ +g+vp++++ a+ ++  + a+++ +     g  +++i ++++  kl  +te+ +   +++p ++ + +++ ++EG++   dpd +++++  p++++ + +  sp+
  MMETSP1137-20121227|7203_1 233 ETLRANMRARAEQLVEALNELGPTCIKVGQALSIRADLIPLPYIEALAGLQDNVPAFPNVQARQLIAEELQLSDStggvdRLFRSLSSTPVAAASLGQVYRGVLKDGREVAVKVQRPDVLEPISLDLYLLRSLAKPFKESRNL--NTDIVGLVDDWGRGFVDELDYTREAANSESFLRSIAKTPlasVVTAPEVVGELSTKRVLTTLWVNGARLEL----SAE-DDVARLCGVALNAYLTMLLETGLLHCDPHPGNLLRTADGRLCILDWGLVTTLEPELQLRFLEHVAHLTAKDYAAVPADLVALGFVPANMEEAATSEGvVEALTDVYSqwagGGGASKIDVSEVTGKLQALTEEKGnfFQIPPYFAYVLRAFSVLEGIALMNDPDYSVLNACLPYISQRVLSDPSPR 635
                 44555667899*********************************************************99987666777789*****************************************************98877633..35899***************************99999752226888********************99853....333.4788************************************************************************************998776554145555555422224579************999988654489************************************99888776665 PP

>> TIGR02721  ycfN_thiK: thiamine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.0     0.035        73      47      75 ..     206     234 ..     193     268 .. 0.77
   2 !   12.4   0.0   6.7e-06     0.014     141     185 ..     465     510 ..     407     523 .. 0.85

  Alignments for each domain:
  == domain 1    score: 0.2 bits;  conditional E-value: 0.035
   TIGR02721  47 alsalklaPkvilvneewllvewleGevi 75 
                   + + +  +++ +    llv+wl Ge +
  MMETSP1137-20121227|7203_1 206 VAQRVAFCARPVSWYLVCLLVDWLRGEET 234
                 555667788999999999********844 PP

  == domain 2    score: 12.4 bits;  conditional E-value: 6.7e-06
   TIGR02721 141 paplklallHlDvhaeNlvkteqG.lklIDWEYAsdgDialeLaav 185
                    l+  llH D h +Nl++t++G l ++DW   +   + l+L ++
  MMETSP1137-20121227|7203_1 465 TMLLETGLLHCDPHPGNLLRTADGrLCILDWGLVTTLEPELQLRFL 510
                 5678899*****************55678**999999999888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (920 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        76  (0.0185275); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.57u 0.17s 00:00:00.74 Elapsed: 00:00:00.59
# Mc/sec: 2058.14
//
Query:       MMETSP1137-20121227|7204_1  [L=86]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.016   12.9   0.0      0.018   12.8   0.0    1.1  1  TIGR03792 TIGR03792: uncharacterized cyanobacterial protein, TIGR03792 family


Domain annotation for each model (and alignments):
>> TIGR03792  TIGR03792: uncharacterized cyanobacterial protein, TIGR03792 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   4.5e-06     0.018      40      69 ..      38      67 ..      23      77 .. 0.82

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 4.5e-06
   TIGR03792 40 vwidpekpeevvllirWesreqWkaipqee 69
                v + ++++e+v++l++W+sr   + +p++e
  MMETSP1137-20121227|7204_1 38 VVQSDRERENVLVLVHWQSRLRSRIVPDNE 67
                56666777************9999999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (86 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        39  (0.00950756); expected 82.0 (0.02)
Passed bias filter:                       36  (0.00877621); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.25
# Mc/sec: 454.04
//
Query:       MMETSP1137-20121227|7205_1  [L=74]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (74 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        38  (0.00926377); expected 82.0 (0.02)
Passed bias filter:                       33  (0.00804486); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.12s 00:00:00.25 Elapsed: 00:00:00.25
# Mc/sec: 390.69
//
Query:       MMETSP1137-20121227|7206_1  [L=32]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (32 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        31  (0.00755729); expected 82.0 (0.02)
Passed bias filter:                       28  (0.00682594); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.35
# Mc/sec: 120.68
//
Query:       MMETSP1137-20121227|7207_1  [L=79]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.02   11.7   0.0      0.021   11.6   0.0    1.0  1  TIGR01760 tape_meas_TP901: phage tail tape measure protein, TP901 family, core region


Domain annotation for each model (and alignments):
>> TIGR01760  tape_meas_TP901: phage tail tape measure protein, TP901 family, core region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   5.2e-06     0.021      75     133 ..       3      61 ..       1      70 [. 0.91

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 5.2e-06
   TIGR01760  75 dllaatptvlklaaasdltaeeaasvlakimnafgltakdaekvaDvlnylannsaakt 133
                 +ll++ +++  + +  +l++ + a v+ +i+  ++ ++ d +++ Dvl++++++  +++
  MMETSP1137-20121227|7207_1   3 QLLELIRDTERMXQRHELDSRNLAXVAHAIARTTQKPDPDFKRLLDVLAQASTTKIDQF 61 
                 788888899999999*************************************9987776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (79 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        96  (0.0234032); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.12u 0.17s 00:00:00.29 Elapsed: 00:00:00.40
# Mc/sec: 260.68
//
Query:       MMETSP1137-20121227|7208_1  [L=159]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (159 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       112  (0.0273038); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.17s 00:00:00.35 Elapsed: 00:00:00.26
# Mc/sec: 807.16
//
Query:       MMETSP1137-20121227|7209_1  [L=139]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (139 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       170  (0.0414432); expected 82.0 (0.02)
Passed bias filter:                      110  (0.0268162); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.17s 00:00:00.37 Elapsed: 00:00:00.25
# Mc/sec: 733.86
//
Query:       MMETSP1137-20121227|7210_1  [L=124]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.5e-13   46.6   0.0    1.1e-12   46.1   0.0    1.2  1  TIGR01575 rimI: ribosomal-protein-alanine acetyltransferase
    4.3e-06   24.1   0.0    9.7e-06   22.9   0.0    1.4  1  TIGR03448 mycothiol_MshD: mycothiol synthase
    2.4e-05   22.3   0.0    2.9e-05   22.1   0.0    1.1  1  TIGR03585 PseH: pseudaminic acid biosynthesis N-acetyl transferase
     0.0018   14.7   0.0     0.0024   14.3   0.0    1.0  1  TIGR03103 trio_acet_GNAT: GNAT-family acetyltransferase TIGR03103
     0.0066   14.3   0.0     0.0076   14.1   0.0    1.1  1  TIGR02406 ectoine_EctA: diaminobutyrate acetyltransferase


Domain annotation for each model (and alignments):
>> TIGR01575  rimI: ribosomal-protein-alanine acetyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.1   0.0   1.3e-15   1.1e-12      58     116 ..      35      95 ..      21      99 .. 0.90

  Alignments for each domain:
  == domain 1    score: 46.1 bits;  conditional E-value: 1.3e-15
   TIGR01575  58 ilniavkpeyqgqGiGraLlkelikeakerg..vkeifLEVResNvaAqaLYkklgfkeia 116
                 ++n+av+ + ++qGiG++L++e ++e++       +i+LEV +sN+aA+++Y  lg++ ++
  MMETSP1137-20121227|7210_1  35 VSNVAVDVKARRQGIGSMLMRECEEEVRRWRpaQDKIWLEVSASNAAARRFYDALGYEVAG 95 
                 89************************9987655789*********************9876 PP

>> TIGR03448  mycothiol_MshD: mycothiol synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.9   0.0   1.2e-08   9.7e-06     234     289 ..      38      95 ..      31      99 .. 0.89

  Alignments for each domain:
  == domain 1    score: 22.9 bits;  conditional E-value: 1.2e-08
   TIGR03448 234 vgvdpaaqgrGLGkaLtliGlkhleer..glravlLYveadneaAvrtYekLgFtvae 289
                 v+vd +a+++G+G++L++   + +++   ++ ++ L v a n aA r Y++Lg++va 
  MMETSP1137-20121227|7210_1  38 VAVDVKARRQGIGSMLMRECEEEVRRWrpAQDKIWLEVSASNAAARRFYDALGYEVAG 95 
                 899***************99999987667899**********************9986 PP

>> TIGR03585  PseH: pseudaminic acid biosynthesis N-acetyl transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.1   0.0   3.5e-08   2.9e-05      87     141 ..      43      99 ..      33     118 .. 0.83

  Alignments for each domain:
  == domain 1    score: 22.1 bits;  conditional E-value: 3.5e-08
   TIGR03585  87 kvk.kgkGsvleealleyafe.klklkkLkleVlesNekalklyekfgfelegvlkq 141
                 k + +g+Gs+l+ + +e + + +   +k++leV  sN +a ++y   g+e+ g+  +
  MMETSP1137-20121227|7210_1  43 KARrQGIGSMLMRECEEEVRRwRPAQDKIWLEVSASNAAARRFYDALGYEVAGRSTG 99 
                 55568**********998887356779***********************9987654 PP

>> TIGR03103  trio_acet_GNAT: GNAT-family acetyltransferase TIGR03103
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.0   2.9e-06    0.0024     161     213 ..      38      92 ..      33      98 .. 0.86

  Alignments for each domain:
  == domain 1    score: 14.3 bits;  conditional E-value: 2.9e-06
   TIGR03103 161 lavdpqaakpGvGealvralaehfqa..rglayldlsvlhdneqaialyeklgfr 213
                 +avd +a++ G+G +l+r+  e+ +     +  + l v   n++a ++y+ lg++
  MMETSP1137-20121227|7210_1  38 VAVDVKARRQGIGSMLMRECEEEVRRwrPAQDKIWLEVSASNAAARRFYDALGYE 92 
                 79******************99886521456678899999*************97 PP

>> TIGR02406  ectoine_EctA: diaminobutyrate acetyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.0   9.2e-06    0.0076      68     136 ..      34     104 ..      29     120 .. 0.80

  Alignments for each domain:
  == domain 1    score: 14.1 bits;  conditional E-value: 9.2e-06
   TIGR02406  68 fvWqvaveekarGkglakrlleallerealeevks..vEatitpdneAskalFkklaqrreveleeeeffd 136
                 +v  vav+ kar +g+++ l+ +  e ++  +  +  +   ++ +n+A+++++ +l+ +     + +e+++
  MMETSP1137-20121227|7210_1  34 YVSNVAVDVKARRQGIGSMLMRECEEEVRRWRPAQdkIWLEVSASNAAARRFYDALGYEVAGRSTGREIVK 104
                 5778***************999988776654444345888899*************988777666666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (124 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       101  (0.0246221); expected 82.0 (0.02)
Passed bias filter:                       96  (0.0234032); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.19u 0.15s 00:00:00.34 Elapsed: 00:00:00.28
# Mc/sec: 564.37
//
Query:       MMETSP1137-20121227|7211_1  [L=226]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (226 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        47  (0.0114578); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.14s 00:00:00.33 Elapsed: 00:00:00.52
# Mc/sec: 573.64
//
Query:       MMETSP1137-20121227|7212_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        45  (0.0109703); expected 82.0 (0.02)
Passed bias filter:                       39  (0.00950756); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.35
# Mc/sec: 199.87
//
Query:       MMETSP1137-20121227|7213_1  [L=189]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (189 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        29  (0.00706972); expected 82.0 (0.02)
Passed bias filter:                       27  (0.00658216); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.12s 00:00:00.30 Elapsed: 00:00:00.32
# Mc/sec: 779.56
//
Query:       MMETSP1137-20121227|7214_1  [L=242]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (242 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        76  (0.0185275); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.13s 00:00:00.34 Elapsed: 00:00:00.51
# Mc/sec: 626.30
//
Query:       MMETSP1137-20121227|7216_1  [L=48]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (48 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        39  (0.00950756); expected 82.0 (0.02)
Passed bias filter:                       38  (0.00926377); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.15s 00:00:00.26 Elapsed: 00:00:01.65
# Mc/sec: 38.40
//
Query:       MMETSP1137-20121227|7217_1  [L=358]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   4.3e-164  543.5   0.0   5.4e-164  543.2   0.0    1.0  1  TIGR01520 FruBisAldo_II_A: fructose-bisphosphate aldolase, class II
    8.2e-96  318.6   0.0    9.4e-96  318.4   0.0    1.0  1  TIGR00167 cbbA: ketose-bisphosphate aldolases
    1.4e-39  134.4   0.0      4e-39  132.8   0.0    1.6  1  TIGR01859 fruc_bis_ald_: fructose-1,6-bisphosphate aldolase, class II
    3.2e-18   63.6   0.1    7.7e-17   59.1   0.0    3.0  1  TIGR01858 tag_bisphos_ald: class II aldolase, tagatose bisphosphate family
    5.3e-11   40.0   0.2    1.7e-06   25.2   0.1    4.2  4  TIGR01521 FruBisAldo_II_B: fructose-bisphosphate aldolase, class II, Calvin cycle subtype


Domain annotation for each model (and alignments):
>> TIGR01520  FruBisAldo_II_A: fructose-bisphosphate aldolase, class II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  543.2   0.0  6.5e-167  5.4e-164       5     354 ..       6     352 ..       4     355 .. 0.99

  Alignments for each domain:
  == domain 1    score: 543.2 bits;  conditional E-value: 6.5e-167
   TIGR01520   5 lktgvilgedvaklfevakeekfaiPainvvssetvnaaleaardakspiilqfsnggaafiaGkGvkdeaekaasiaGaiaaaeyvrsiaekygvpvvlhtdhCakkllpyvdglleadekyfkkegkPlfsshmldlseepieenieiakkylkrmakiklileieiGitGGeedGvdneeadkeelytkPedvekvyeelskispkfsiaaafGnvhGvykpGnvklrPdiladgqeyvaeklglkeakplsfvfhGGsGstkeeikealsyGvvkvnvdtdtqyaalegildyvlknedylqsqvGnpkgeekpnkkvydPrvwlreaeksmkarvekaleelnai 354
                 +k+gv+ g+d+  lf+ ak+e faiPa+n+vss++vna+le+a+++k p+i+q+s+gg af++GkG+kd+  ka +iaG++++a++vr +a+ y +pvv+h+dhCakkllp++dg+l+ad++yf+k+g+Plfsshmldlsee  eenie+++ky+  mak+k++le+eiGitGG edGvdn+ ++k +l t+ e+v+ vye+l +i p+fsiaaafGnvhGvykpGnvklrP++l ++qey+a k g +  kpl +vfhGGsGst+++ik+a+s+Gvvk+n+dtdtq+a++eg+l++++++e ylq+q+Gnp+ge+kpnk +ydPr wlre e+sm++rve a++el a 
  MMETSP1137-20121227|7217_1   6 VKSGVVFGDDLLALFKWAKDEGFAIPAVNCVSSSSVNAVLEGAAKSKNPVIIQVSQGGGAFYCGKGIKDDGYKA-TIAGSVSLAQHVRAVAPLYDIPVVIHSDHCAKKLLPWFDGMLAADKEYFEKNGEPLFSSHMLDLSEEVDEENIETCVKYFTEMAKMKIWLEMEIGITGGVEDGVDNSGVAKVKLCTSAEQVYFVYEALAPIAPYFSIAAAFGNVHGVYKPGNVKLRPELLGQHQEYAATKSGSP--KPLYLVFHGGSGSTADDIKTAVSNGVVKMNIDTDTQWAYWEGLLKFYKSKEGYLQGQIGNPEGEDKPNKSFYDPRKWLRECEASMTKRVELAFQELGAF 352
                 6899*********************************************************************9.9****************************************************************************************************************************************************************************9..**********************************************************************************************99775 PP

>> TIGR00167  cbbA: ketose-bisphosphate aldolases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  318.4   0.0   1.1e-98   9.4e-96       3     287 ..      13     352 ..      11     355 .. 0.98

  Alignments for each domain:
  == domain 1    score: 318.4 bits;  conditional E-value: 1.1e-98
   TIGR00167   3 lvdvkellekakeegyaipaiNvvnlesikavleaaeeaksPviiqasegaakyiaG............leaiaalvkalveaekytvPvvlHlDHga.............seesiaeavkagfsSvMiDaSeepfeeNieltkkvvelahkvgvsvEaElGilggeedgvdnskadesalytdpe....eakelvkksqvdalAaaiGnvHGvYkkepkkLkferleeiqklvs........lplVlHGgsgipeeeikkaiklGvvKvNidTdlqlAfaeavreylkenkde..................ydprkylkeaekamkevvkekikelgsa 287
                 ++d+  l++ ak eg+aipa+N+v+++s++avle a+++k Pviiq+s+g+ +++ G             + ++ + ++++ a  y +Pvv+H+DH+a             ++e+++++++++fsS+M+D+See  eeNie++ k++  ++k+ +++E+E+Gi+gg edgvdns +++ +l t  e    ++++l+++ + +++Aaa+GnvHGvYk++++kL++e l ++q++          l lV+HGgsg+++++ik+a+++GvvK+NidTd+q+A++e++++++k+++ +                  ydprk+l+e e +m+++v+ +++elg+ 
  MMETSP1137-20121227|7217_1  13 GDDLLALFKWAKDEGFAIPAVNCVSSSSVNAVLEGAAKSKNPVIIQVSQGGGAFYCGkgikddgykatiAGSVSLAQHVRAVAPLYDIPVVIHSDHCAkkllpwfdgmlaaDKEYFEKNGEPLFSSHMLDLSEEVDEENIETCVKYFTEMAKMKIWLEMEIGITGGVEDGVDNSGVAKVKLCTSAEqvyfVYEALAPIAPYFSIAAAFGNVHGVYKPGNVKLRPELLGQHQEYAAtksgspkpLYLVFHGGSGSTADDIKTAVSNGVVKMNIDTDTQWAYWEGLLKFYKSKEGYlqgqignpegedkpnksfYDPRKWLRECEASMTKRVELAFQELGAF 352
                 5677789**********************************************************9999999999999************************************************************************************************************99999******************************************9999***************************************************************************************************9976 PP

>> TIGR01859  fruc_bis_ald_: fructose-1,6-bisphosphate aldolase, class II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  132.8   0.0   4.9e-42     4e-39       7     278 ..      19     351 ..      15     354 .. 0.78

  Alignments for each domain:
  == domain 1    score: 132.8 bits;  conditional E-value: 4.9e-42
   TIGR01859   7 llekakkekYavgafninnlellqaileaaeeeksPvivqvsegavk.Ylg.............gikvvvalvkalieklsivPvalhLDhGss.....yescikai.....kaG...fssvmiDashlpleenlketkkvveiahakgvsveaelGklgGieddvvek...eaeladideakklvketgvD.....aLaiaiGtshGkykge.pkldferlkeikkl......lnlP..lvlhGasGipeeqlkkaiklgiakvnidtdlrlaftaairkvle..................ekkdeydpRkilaparealkevvkekikvlgs 278
                 l++ ak+e++a++a+n      ++a+le a ++k Pvi+qvs+g    Y g             g   +++ v+a++  +  +Pv++h Dh  +     ++ +++a      k+G   fss m+D s+   een+++  k  +   ++ +  e+e+G  gG+ed+v++    +++l +  e   +v e+        ++a+a G++hG yk    kl+ e l + +++       + P  lv hG+sG + +++k a++ g+ k+nidtd++ a+ + + k+ +                   +k+ ydpRk+l +++  + + v+  +++lg+
  MMETSP1137-20121227|7217_1  19 LFKWAKDEGFAIPAVNCVSSSSVNAVLEGAAKSKNPVIIQVSQGGGAfYCGkgikddgykatiaGSVSLAQHVRAVAPLYD-IPVVIHSDHCAKkllpwFDGMLAADkeyfeKNGeplFSSHMLDLSEEVDEENIETCVKYFTEMAKMKIWLEMEIGITGGVEDGVDNSgvaKVKLCTSAEQVYFVYEALAPiapyfSIAAAFGNVHGVYKPGnVKLRPELLGQHQEYaatksgSPKPlyLVFHGGSGSTADDIKTAVSNGVVKMNIDTDTQWAYWEGLLKFYKskegylqgqignpegedkPNKSFYDPRKWLRECEASMTKRVELAFQELGA 351
                 7889***************************************87652666999999655555444455556666666555.*********9754444466666654111113445569******************999888888899*****************986222456777777777888754331122269*********99865455555555443333111111345533799***************************************999**************98877889****************99998888885 PP

>> TIGR01858  tag_bisphos_ald: class II aldolase, tagatose bisphosphate family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.1   0.0   9.4e-20   7.7e-17       7     247 ..      19     302 ..      16     353 .. 0.68

  Alignments for each domain:
  == domain 1    score: 59.1 bits;  conditional E-value: 9.4e-20
   TIGR01858   7 llkeaqkgGyavpafnihnletlqvvvetaaelkspvilaGtpg..tf.............kyagteelvalvsaaakkyelplalhldhhes.....l........ddikqkvaaGvksvmidashlsfeenvklvkevvdfchrfdasveaelGrlgGveddlsvd..eedalytdpdeakefv.ea....tGvdslavaiGtahGlykea.....pkl..dfdrlakirekvd..vplvlhGasdvpdelvrrtielGiskvnvatelkiafsdalkayfie 247
                 l+k a+ +G+a+pa n     ++++v+e aa+ k pvi+  + g  +f             + ag+  l + v+a+a  y++p+ +h dh  +     +        +  +++ +  + s m+d s    een++   +      ++   +e e+G  gGved +     ++  l t  ++   fv ea    +   s+a a G  hG+yk       p+l  + +  a  +      + lv+hG+s+ + ++++ ++  G+ k+n+ t+ + a+ + l +++  
  MMETSP1137-20121227|7217_1  19 LFKWAKDEGFAIPAVNCVSSSSVNAVLEGAAKSKNPVIIQVSQGggAFycgkgikddgykaTIAGSVSLAQHVRAVAPLYDIPVVIHSDHCAKkllpwFdgmlaadkEYFEKNGEPLFSSHMLDLSEEVDEENIETCVKYFTEMAKMKIWLEMEIGITGGVEDGVDNSgvAKVKLCTSAEQVY-FVyEAlapiAPYFSIAAAFGNVHGVYKPGnvklrPELlgQHQEYAATKSGSPkpLYLVFHGGSGSTADDIKTAVSNGVVKMNIDTDTQWAYWEGLLKFYKS 302
                 5677999*******************************975543112212211122111113456667888889999*************87633333211111111233444455689***************986665555668899**************88654214555666666654.44143211134569************954211224442222333333333332255899*******************************98887666543 PP

>> TIGR01521  FruBisAldo_II_B: fructose-bisphosphate aldolase, class II, Calvin cycle subtype
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.2   0.1   2.1e-09   1.7e-06       7      84 ..      19     110 ..      15     116 .. 0.75
   2 ?    0.7   0.0     0.058        48     151     200 ..     176     228 ..     155     242 .. 0.74
   3 !    6.7   0.0   0.00087      0.71     255     283 ..     265     293 ..     257     308 .. 0.83
   4 ?    0.5   0.0     0.065        53     293     323 ..     321     351 ..     315     357 .. 0.77

  Alignments for each domain:
  == domain 1    score: 25.2 bits;  conditional E-value: 2.1e-09
   TIGR01521   7 lldhaaergygvpafnvnnleqilaimeaadktdspvilqasrgars.y..............agevllrklvlaaveeypdipvvlhqdhgn 84 
                 l+  a ++g+ +pa n      + a++e a k+  pvi+q+s+g    y              ag v l++ v a+   y dipvv+h dh +
  MMETSP1137-20121227|7217_1  19 LFKWAKDEGFAIPAVNCVSSSSVNAVLEGAAKSKNPVIIQVSQGGGAfYcgkgikddgykatiAGSVSLAQHVRAVAPLY-DIPVVIHSDHCA 110
                 6778999***********************************98643132222222222222356667777777776666.8*********76 PP

  == domain 2    score: 0.7 bits;  conditional E-value: 0.058
   TIGR01521 151 kgeaedghgfegaldrsqlltdpeeaaefvkktkvd.....alavaigtshgayk 200
                 +g+ edg+   g+  + +l t   e + fv ++        ++a a g  hg yk
  MMETSP1137-20121227|7217_1 176 TGGVEDGVDNSGVA-KVKLCTSA-EQVYFVYEALAPiapyfSIAAAFGNVHGVYK 228
                 46788999888864.66777765.56788887654311222689999*****999 PP

  == domain 3    score: 6.7 bits;  conditional E-value: 0.00087
   TIGR01521 255 gvpveeivkgikfgvrkvnidtdlrlaat 283
                 g   ++i+  +  gv k+nidtd + a  
  MMETSP1137-20121227|7217_1 265 GSTADDIKTAVSNGVVKMNIDTDTQWAYW 293
                 56678999***************998865 PP

  == domain 4    score: 0.5 bits;  conditional E-value: 0.065
   TIGR01521 293 dpsefdprkflkkaveamkdvckaryeafgt 323
                 ++s +dprk+l+++   m +     ++++g+
  MMETSP1137-20121227|7217_1 321 NKSFYDPRKWLRECEASMTKRVELAFQELGA 351
                 67789*******9999998877777776665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (358 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       104  (0.0253535); expected 82.0 (0.02)
Passed bias filter:                       98  (0.0238908); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.35u 0.16s 00:00:00.51 Elapsed: 00:00:00.81
# Mc/sec: 583.36
//
Query:       MMETSP1137-20121227|7218_1  [L=63]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (63 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                         2  (0.000487567); expected 82.0 (0.02)
Passed bias filter:                        2  (0.000487567); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.13s 00:00:00.24 Elapsed: 00:00:00.25
# Mc/sec: 332.61
//
Query:       MMETSP1137-20121227|7219_1  [L=191]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (191 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        87  (0.0212092); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.14s 00:00:00.33 Elapsed: 00:00:00.33
# Mc/sec: 763.94
//
Query:       MMETSP1137-20121227|7221_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                         6  (0.0014627); expected 82.0 (0.02)
Passed bias filter:                        6  (0.0014627); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.15s 00:00:00.28 Elapsed: 00:00:00.24
# Mc/sec: 280.48
//
Query:       MMETSP1137-20121227|7222_1  [L=163]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (163 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        59  (0.0143832); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.13s 00:00:00.29 Elapsed: 00:00:00.35
# Mc/sec: 614.69
//
Query:       MMETSP1137-20121227|7223_1  [L=213]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.2e-07   27.1   0.0    1.1e-05   23.0   0.0    2.1  1  TIGR01262 maiA: maleylacetoacetate isomerase


Domain annotation for each model (and alignments):
>> TIGR01262  maiA: maleylacetoacetate isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.0   0.0   2.7e-09   1.1e-05      14     170 ..      12     158 ..       9     196 .. 0.80

  Alignments for each domain:
  == domain 1    score: 23.0 bits;  conditional E-value: 2.7e-09
   TIGR01262  14 vRiaLaLkgidyesvpvnLlkdGeqkkeefkalNPqelvPtLkidegevltqSlAiieyLeetypepaLlpkdpakrarvralalliacdihPlqNlrvlqlleeklgvdeeekkewlkhwiekGlaalEellk.ekagafcvGdevtladvcLvpqv 170
                 +R+aLaL g++y+   v++        +e k   P + +P+L+  +g+++ q+ Ai+ ++ ++   + L p+d+   ar  ++  ++   +  l N      l +  ++++++ ++       k l+ l++ ++ + +  f+vGd++t+ad+++   +
  MMETSP1137-20121227|7223_1  12 IRLALALGGVSYTDDIVQFKD-----WPERKPSTPWGSMPVLTLSDGTSIAQARAIMRFVGKE---TGLYPTDNLLAARCDEVMDTLEDILTGLMNQGSG--LPQA-EKEAKRLEAIQSGTPFKILTKLDQYIAeHGSSGFAVGDSLTIADLMMLCLL 158
                 79************9999877.....68889999*************************9875...66************99999988777777777533..3322.222333333333344455788899888666778***********9887665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (213 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        77  (0.0187713); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.21u 0.16s 00:00:00.37 Elapsed: 00:00:00.82
# Mc/sec: 342.85
//
Query:       MMETSP1137-20121227|7224_1  [L=276]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.9e-11   40.7   4.0      2e-05   21.5   0.1    3.6  2  TIGR01302 IMP_dehydrog: inosine-5'-monophosphate dehydrogenase
    4.3e-06   24.3   1.0     0.0083   13.6   0.3    2.3  2  TIGR00393 kpsF: sugar isomerase, KpsF/GutQ family
    0.00023   18.2   3.5      0.011   12.7   1.8    2.9  2  TIGR01186 proV: glycine betaine/L-proline transport ATP binding subunit
     0.0014   15.1   2.5       0.43    7.0   0.3    2.9  3  TIGR01137 cysta_beta: cystathionine beta-synthase
  ------ inclusion threshold ------
       0.01   12.4   8.9      0.027   11.0   0.2    3.2  3  TIGR00400 mgtE: magnesium transporter


Domain annotation for each model (and alignments):
>> TIGR01302  IMP_dehydrog: inosine-5'-monophosphate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.8   1.1e-06   0.00093     136     201 ..      48     119 ..       1     128 [. 0.75
   2 !   21.5   0.1   2.4e-08     2e-05      94     197 ..     151     270 ..     118     274 .. 0.70

  Alignments for each domain:
  == domain 1    score: 16.0 bits;  conditional E-value: 1.1e-06
   TIGR01302 136 rfvkdkskk....vsevmt..keevitvkeeidleeaeevleekkieklpvvdkegelvglvtvkdiekake 201
                 r++++ ++     v+++m   k++ +t++e+ ++ ++ ++l ++++++++v +++g lv ++t++d+++a +
  MMETSP1137-20121227|7224_1  48 RYAQEMQEWkeliVQQAMHqkKQKAVTMEEGGTFASVVRLLIDNHVHRVLVQNSDGGLVDIITQSDVVNALH 119
                 4444433222233889998767899*****************************************998755 PP

  == domain 2    score: 21.5 bits;  conditional E-value: 2.4e-08
   TIGR01302  94 sPettvedvlelkekkgisgvpvvedgkeegklvGivtkkdlrfvkdkskk..vsevmtkeevitv................keeidleeaeevleekkieklpvvdkegelvglvtvkdie 197
                   ++   ++ ++ + +++s+vpvv++++  +kl+G ++ +d+r +++ +    v +v t e   +v                + + ++++a e+l++ ki+++ + dke +++ +++  +i 
  MMETSP1137-20121227|7224_1 151 DKNAMAIEAFHIINDHNVSAVPVVDKEDG-NKLLGTISVRDIRTLSNDGDFpkVLYVHTAE-AFCVklharvdtkaplaaslQLHNTFRDAVELLHKYKIHRVWICDKEFKVIHVLSLYNIL 270
                 4455555677889999********99555.5************999988643377777733.333301111111111111112234568999*********************999988776 PP

>> TIGR00393  kpsF: sugar isomerase, KpsF/GutQ family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   0.3     1e-05    0.0083     171     267 ..      77     186 ..      47     187 .. 0.70
   2 !    9.3   0.0    0.0002      0.16     204     267 ..     196     264 ..     188     265 .. 0.66

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 1e-05
   TIGR00393 171 ktaslkdallelsekrlGlavvvdeneqlkGvltdGdlrr......allgggalkkevkdvmtlg.....gktlksdallveakellkkrkitslvvvdde..nkllGvl 267
                 +  ++  ++  l ++++  ++v + +  l+ ++t  d+          ++   l++++ +++ ++     +  + ++a+++ea ++++ +++ +++vvd+e  nkllG +
  MMETSP1137-20121227|7224_1  77 EGGTFASVVRLLIDNHVHRVLVQNSDGGLVDIITQSDVVNalhenlNRVDLAYLNRKISQFACIEecdhaPFVVDKNAMAIEAFHIINDHNVSAVPVVDKEdgNKLLGTI 186
                 555566666666667777788888888899999999987633321122334567888888876542222277899***********************965348999987 PP

  == domain 2    score: 9.3 bits;  conditional E-value: 0.0002
   TIGR00393 204 tdGdlrrallgggalkkevk.....dvmtlggktlksdallveakellkkrkitslvvvddenkllGvl 267
                  dGd  ++l   +a    vk     d  ++ + +l+ ++   +a ell+k ki+ + + d+e k++ vl
  MMETSP1137-20121227|7224_1 196 NDGDFPKVLYVHTAEAFCVKlharvDTKAPLAASLQLHNTFRDAVELLHKYKIHRVWICDKEFKVIHVL 264
                 56776663332222222222111013334445689999999***********************99887 PP

>> TIGR01186  proV: glycine betaine/L-proline transport ATP binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.7   1.8   1.3e-05     0.011     241     350 ..      61     188 ..      48     198 .. 0.68
   2 ?    0.8   0.0     0.054        44     258     291 ..     233     266 ..     206     275 .. 0.80

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 1.3e-05
   TIGR01186 241 veriakraetvlitktadkglrsalkllkdedveslyvvdrekklvGvvdvesikkarkka.qlledvl..............kediltvdeqtllsellskvlkagik.vpvvded..qrlvGivsr 350
                 v++ +++ +++ +t+  + +  s ++ll d++v+ ++v + +  lv +++ +++ +a++++ + ++ ++               +++++vd++++  e ++ + +++++ vpvvd +  ++l G +s 
  MMETSP1137-20121227|7224_1  61 VQQAMHQKKQKAVTMEEGGTFASVVRLLIDNHVHRVLVQNSDGGLVDIITQSDVVNALHENlNRVDLAYlnrkisqfacieecDHAPFVVDKNAMAIEAFHIINDHNVSaVPVVDKEdgNKLLGTISV 188
                 56666777777888888888888888888888888888888888888887665555544331333322211111111111111346789*******************99*****7634678887764 PP

  == domain 2    score: 0.8 bits;  conditional E-value: 0.054
   TIGR01186 258 dkglrsalkllkdedveslyvvdrekklvGvvdv 291
                   + r+a++ll++ +++ +++ d+e k+  v+++
  MMETSP1137-20121227|7224_1 233 HNTFRDAVELLHKYKIHRVWICDKEFKVIHVLSL 266
                 57899*******************9998887776 PP

>> TIGR01137  cysta_beta: cystathionine beta-synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.0   0.3   0.00052      0.43     331     402 ..      52     126 ..      40     146 .. 0.74
   2 ?    2.7   0.0     0.011       8.7     350     390 ..     149     191 ..     141     199 .. 0.79
   3 !    3.8   0.0    0.0048         4     338     393 ..     218     272 ..     201     276 .] 0.81

  Alignments for each domain:
  == domain 1    score: 7.0 bits;  conditional E-value: 0.00052
   TIGR01137 331 vlkvfgnarvkdl...alkalvtvketetvadaieilrekGfdqlPvvkeagkvlgsvtlrellsallakkakle 402
                 +++ ++++ v++    + ++ vt++e  t a+++++l ++ + ++ v + +g ++  +t++++++al ++  + +
  MMETSP1137-20121227|7224_1  52 EMQEWKELIVQQAmhqKKQKAVTMEEGGTFASVVRLLIDNHVHRVLVQNSDGGLVDIITQSDVVNALHENLNRVD 126
                 4445666655543111346789*******************************************9988765544 PP

  == domain 2    score: 2.7 bits;  conditional E-value: 0.011
   TIGR01137 350 tvketetvadaieilrekGfdqlPvvk..eagkvlgsvtlrel 390
                  v +++   +a +i++++ ++ +Pvv+    +k+lg+++ r++
  MMETSP1137-20121227|7224_1 149 VVDKNAMAIEAFHIINDHNVSAVPVVDkeDGNKLLGTISVRDI 191
                 567777888999**************95334688888887765 PP

  == domain 3    score: 3.8 bits;  conditional E-value: 0.0048
   TIGR01137 338 arvkdlalkalvtvketetvadaieilrekGfdqlPvvkeagkvlgsvtlrellsa 393
                 arv d + +   +++  +t +da+e+l+++ + ++ + +++ kv+   +l ++l++
  MMETSP1137-20121227|7224_1 218 ARV-DTKAPLAASLQLHNTFRDAVELLHKYKIHRVWICDKEFKVIHVLSLYNILTE 272
                 555.4555555667777899*************************99999999986 PP

>> TIGR00400  mgtE: magnesium transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.1     0.032        26     223     254 ..       3      36 ..       1      41 [. 0.73
   2 ?    4.2   0.3    0.0039       3.2     193     254 ..      57     121 ..      40     136 .. 0.81
   3 ?   11.0   0.2   3.3e-05     0.027     215     248 ..     157     192 ..     145     226 .. 0.80

  Alignments for each domain:
  == domain 1    score: 1.2 bits;  conditional E-value: 0.032
   TIGR00400 223 kydflavPvvde..enrlvGivtvddiidvveee 254
                  ++++++Pv  +  +  lvG v + d++ +v++ 
  MMETSP1137-20121227|7224_1   3 SHNLMSLPVYKDkeQTTLVGCVDMIDMVAMVIKM 36 
                 68999****854114579**99888888877765 PP

  == domain 2    score: 4.2 bits;  conditional E-value: 0.0039
   TIGR00400 193 peekvsdimvssvvsvdavqdqee...varliqkydflavPvvdeenrlvGivtvddiidvveee 254
                  e +v++ m  +   ++++++      v rl+    +  v v ++++ lv i+t  d+++ ++e+
  MMETSP1137-20121227|7224_1  57 KELIVQQAMHQKKQKAVTMEEGGTfasVVRLLIDNHVHRVLVQNSDGGLVDIITQSDVVNALHEN 121
                 577899999998888888887654334777777778999********************998765 PP

  == domain 3    score: 11.0 bits;  conditional E-value: 3.3e-05
   TIGR00400 215 eevarliqkydflavPvvdee..nrlvGivtvddii 248
                  e   +i+ +++ avPvvd+e  n+l+G + v di 
  MMETSP1137-20121227|7224_1 157 IEAFHIINDHNVSAVPVVDKEdgNKLLGTISVRDIR 192
                 5666899***********9885579*******9985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (276 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       162  (0.0394929); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.36u 0.15s 00:00:00.51 Elapsed: 00:00:00.80
# Mc/sec: 455.36
//
Query:       MMETSP1137-20121227|7226_1  [L=220]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.2e-34  115.7   0.7    6.3e-34  114.3   0.0    1.9  2  TIGR01126 pdi_dom: protein disulfide-isomerase domain
    4.8e-34  116.5   2.0    5.3e-34  116.4   1.4    1.1  1  TIGR01130 ER_PDI_fam: protein disulfide isomerases
    4.5e-13   47.1   0.1      1e-12   45.9   0.0    1.7  2  TIGR01068 thioredoxin: thioredoxin
     0.0002   18.8   0.3    0.00043   17.8   0.0    1.6  2  TIGR00385 dsbE: periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily
     0.0033   15.7   0.1     0.0073   14.6   0.0    1.6  1  TIGR02200 GlrX_actino: glutaredoxin-like protein
     0.0073   12.7   0.0      0.012   12.1   0.0    1.3  1  TIGR00424 APS_reduc: 5'-adenylylsulfate reductase, thioredoxin-independent
  ------ inclusion threshold ------
      0.016   13.2   0.0      0.058   11.3   0.0    1.9  1  TIGR00411 redox_disulf_1: redox-active disulfide protein 1
      0.016   13.6   0.1      0.045   12.1   0.1    1.8  1  TIGR02196 GlrX_YruB: glutaredoxin-like protein, YruB-family
      0.049   11.5   2.3        0.1   10.5   1.1    2.0  1  TIGR00012 L29: ribosomal protein L29


Domain annotation for each model (and alignments):
>> TIGR01126  pdi_dom: protein disulfide-isomerase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  114.3   0.0   1.4e-36   6.3e-34       1     103 [.      20     122 ..      20     124 .. 0.95
   2 ?   -0.7   0.1       0.8   3.6e+02      46      78 ..     170     204 ..     155     215 .. 0.57

  Alignments for each domain:
  == domain 1    score: 114.3 bits;  conditional E-value: 1.4e-36
   TIGR01126   1 lvaenfdelvldenkdvlvefyaPWCGhCkklaPeyeklakelkkeeekvkiakvdatae.kelaskfkvsgfPtlkffkkgkkepvdyeGeReaeelvefvee 103
                 l+ ++f++ v ++ k+++++f+aPWCGhCkk+ P ++ la+e+++++ kv ia+vd+ta  k+l++k++v+gfPt+k+f+  ++e +dy+G+R++++l +f +e
  MMETSP1137-20121227|7226_1  20 LTPDTFEDQVFKSGKSAFIKFFAPWCGHCKKMKPDWDTLATEYESSD-KVLIADVDCTAAgKSLCDKYGVKGFPTIKYFNPPDEEGEDYKGGRSLSDLKKFAAE 122
                 6789****************************************865.8*********987899*************************************876 PP

  == domain 2    score: -0.7 bits;  conditional E-value: 0.8
   TIGR01126  46 eeekvkiakvdataekelas..kfkvsgfPtlkff 78 
                 e+++  + +++at ++++ +   +k  + P +k++
  MMETSP1137-20121227|7226_1 170 EKHDTLLKELQATYKESMDKveALKEASAPKIKLL 204
                 34456677777776655443103333455555555 PP

>> TIGR01130  ER_PDI_fam: protein disulfide isomerases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  116.4   1.4   1.2e-36   5.3e-34       3     185 ..      17     195 ..      15     220 .] 0.70

  Alignments for each domain:
  == domain 1    score: 116.4 bits;  conditional E-value: 1.2e-36
   TIGR01130   3 vleltkenfddli.kenelvLveFYAPWCGHCksLaPeYekAAeelkkkspkvklakvDatee.kelaqkygvsGyPtLkifrnge.sssdYnGpReaegivkylkkqsgPaskeletvedlekllekkevvvvgvfkdldselvetflevaeklrdkfkavasssdeaalkkleakkdevvlvkk 185
                  lelt ++f+d++ k+ + + ++F+APWCGHCk+++P+++  A+e ++++ kv +a vD+t+  k+l++kygv+G+Pt+k+f   + + +dY+G+R+ + + k+     gP  + + t+e+  + ++++  + + ++++  +++ e  ++  +++++k +++ ++ +    ++++++ d+v ++k+
  MMETSP1137-20121227|7226_1  17 TLELTPDTFEDQVfKSGKSAFIKFFAPWCGHCKKMKPDWDTLATEYESSD-KVLIADVDCTAAgKSLCDKYGVKGFPTIKYFNPPDeEGEDYKGGRSLSDLKKFA-AELGPGCS-VDTMENCSDEQKAELQTYIDMSAEDRAKMLEDLKTELKTAEEKHDTLLKELQ----ATYKESMDKVEALKE 195
                 689******997747889****************************9999.**********9989*****************9877699**************96.5689*994.6666666655555555555555554544444444333333333333333222....222222222222222 PP

>> TIGR01068  thioredoxin: thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.9   0.0   2.3e-15     1e-12       4      77 ..      23      99 ..      20     122 .. 0.79
   2 ?   -3.0   0.0       4.1   1.9e+03      37      51 ..     191     205 ..     176     217 .. 0.56

  Alignments for each domain:
  == domain 1    score: 45.9 bits;  conditional E-value: 2.3e-15
   TIGR01068  4 enfeetvassdklvlvDfwAeWCgpCkmlaPvleelakeleekvkvvKlnvd...eeqeiaakygirsiPtlllfkn 77
                ++fe++v +s k + + f+A+WCg Ck + P  + la+e+e++ kv+  +vd   + +++  kyg++  Pt+  f+ 
  MMETSP1137-20121227|7226_1 23 DTFEDQVFKSGKSAFIKFFAPWCGHCKKMKPDWDTLATEYESSDKVLIADVDctaAGKSLCDKYGVKGFPTIKYFNP 99
                68999999999***************************99876666666655222457899***********88864 PP

  == domain 2    score: -3.0 bits;  conditional E-value: 4.1
   TIGR01068  37 eelakeleekvkvvK 51 
                 e l++  + k+k++K
  MMETSP1137-20121227|7226_1 191 EALKEASAPKIKLLK 205
                 333344444444444 PP

>> TIGR00385  dsbE: periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.0   9.4e-07   0.00043      43      90 ..      13      60 ..       4      70 .. 0.86
   2 ?   -2.2   0.0       1.3   5.8e+02      83      83 ..     173     173 ..     134     205 .. 0.55

  Alignments for each domain:
  == domain 1    score: 17.8 bits;  conditional E-value: 9.4e-07
   TIGR00385 43 ekeaelkekvqlltaevlkkgklvLlnvwasWCptCraehplLkelak 90
                  +a+l+ + ++++++v+k gk   + ++a WC+ C++  p    la 
  MMETSP1137-20121227|7226_1 13 SAAATLELTPDTFEDQVFKSGKSAFIKFFAPWCGHCKKMKPDWDTLAT 60
                556778888889999**********************99888777775 PP

  == domain 2    score: -2.2 bits;  conditional E-value: 1.3
   TIGR00385  83 p 83 
                 +
  MMETSP1137-20121227|7226_1 173 D 173
                 2 PP

>> TIGR02200  GlrX_actino: glutaredoxin-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.0   1.6e-05    0.0073       6      57 ..      41      96 ..      38     100 .. 0.70

  Alignments for each domain:
  == domain 1    score: 14.6 bits;  conditional E-value: 1.6e-05
   TIGR02200  6 atswCgyCaslkrtLdkdgaeYevvd..iekdeeaadyvksvnd..GnktvPtVkf 57
                 ++wCg C+++k   d    eYe  d  +  d + ++  ks+ d  G k  Pt+k+
  MMETSP1137-20121227|7226_1 41 FAPWCGHCKKMKPDWDTLATEYESSDkvLIADVDCTAAGKSLCDkyGVKGFPTIKY 96
                589********************988542344444444444443336666666666 PP

>> TIGR00424  APS_reduc: 5'-adenylylsulfate reductase, thioredoxin-independent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.1   0.0   2.6e-05     0.012     376     436 ..      37      97 ..      26     119 .. 0.75

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 2.6e-05
   TIGR00424 376 lvvlyapwcpfcqameasyvelaeklagsg.vkvakfradgdqkefakqelqlgsfptillf 436
                 ++ ++apwc  c+ m+  ++ la     s  v +a   +    k+++  +  ++ fpti +f
  MMETSP1137-20121227|7226_1  37 FIKFFAPWCGHCKKMKPDWDTLATEYESSDkVLIADVDCTAAGKSLCD-KYGVKGFPTIKYF 97 
                 45689******************9986543144555555555666654.4678888888877 PP

>> TIGR00411  redox_disulf_1: redox-active disulfide protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   0.00013     0.058       6      57 ..      40      94 ..      37      98 .. 0.75

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 0.00013
   TIGR00411  6 ftsPtCPyCPkakkvveevakee..gdkvevekinvme.dlkkaleyGimavPai 57
                f +P C +C k k   +  a e   +dkv +  ++    ++    +yG+++ P+i
  MMETSP1137-20121227|7226_1 40 FFAPWCGHCKKMKPDWDTLATEYesSDKVLIADVDCTAaGKSLCDKYGVKGFPTI 94
                668**************99987611566767777755414444569*******99 PP

>> TIGR02196  GlrX_YruB: glutaredoxin-like protein, YruB-family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.1   9.9e-05     0.045       7      54 ..      42      94 ..      38      98 .. 0.74

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 9.9e-05
   TIGR02196  7 tpwCppCkkakeyLkskgiafeeid...ve.kd.saaaeellkklgqrsvPvi 54
                 pwC++Ckk+k    +   ++e  d   ++  d  aa + l  k+g ++ P+i
  MMETSP1137-20121227|7226_1 42 APWCGHCKKMKPDWDTLATEYESSDkvlIAdVDcTAAGKSLCDKYGVKGFPTI 94
                69*******************98875432212313455678888888888887 PP

>> TIGR00012  L29: ribosomal protein L29
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   1.1   0.00023       0.1       4      21 ..     148     165 ..     147     178 .. 0.91

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 0.00023
   TIGR00012   4 ekskeELakklkelKkeL 21 
                 ++s+e++ak+l++lK+eL
  MMETSP1137-20121227|7226_1 148 DMSAEDRAKMLEDLKTEL 165
                 69***************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (220 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       297  (0.0724037); expected 82.0 (0.02)
Passed bias filter:                      179  (0.0436373); expected 82.0 (0.02)
Passed Vit filter:                        30  (0.00731351); expected 4.1 (0.001)
Passed Fwd filter:                         9  (0.00219405); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.26u 0.15s 00:00:00.41 Elapsed: 00:00:00.68
# Mc/sec: 427.02
//
Query:       MMETSP1137-20121227|7230_1  [L=395]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (395 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       181  (0.0441248); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.18s 00:00:00.48 Elapsed: 00:00:01.12
# Mc/sec: 465.50
//
Query:       MMETSP1137-20121227|7231_1  [L=129]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (129 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        49  (0.0119454); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.13s 00:00:00.28 Elapsed: 00:00:00.28
# Mc/sec: 608.09
//
Query:       MMETSP1137-20121227|7233_1  [L=314]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0036   14.4   0.0     0.0066   13.5   0.0    1.4  1  TIGR01746 Thioester-redct: thioester reductase domain


Domain annotation for each model (and alignments):
>> TIGR01746  Thioester-redct: thioester reductase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   0.0   1.6e-06    0.0066      39      96 ..      90     144 ..      42     151 .. 0.67

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 1.6e-06
   TIGR01746  39 haleRLrealrsyrleeeklaaerievvaGdlseprlGLseaewerLaeevdtivhng 96 
                 +  + Lr+  + + l+  +    ++ +v Gd+s+++lG+ +     L++ v +iv+++
  MMETSP1137-20121227|7233_1  90 D--AQLRSIRKVANLSGPSQH-TNLHFVEGDISQENLGFGKSLCTTLQQRVTYIVNAA 144
                 3..345555555556666655.5899*****************************977 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (314 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        93  (0.0226719); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.26u 0.16s 00:00:00.42 Elapsed: 00:00:00.30
# Mc/sec: 1381.49
//
Query:       MMETSP1137-20121227|7234_1  [L=116]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0015   15.7   1.0     0.0026   14.9   0.7    1.3  1  TIGR00599 rad18: DNA repair protein rad18


Domain annotation for each model (and alignments):
>> TIGR00599  rad18: DNA repair protein rad18
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.7   6.4e-07    0.0026      43      69 ..      74     100 ..      71     109 .. 0.89

  Alignments for each domain:
  == domain 1    score: 14.9 bits;  conditional E-value: 6.4e-07
   TIGR00599  43 sCsHtFCslCiRrcLseepkCPlCrae 69 
                  C+H F   Ci r+L++ + CPlC  e
  MMETSP1137-20121227|7234_1  74 CCGHVFHLDCISRWLKTRSVCPLCNRE 100
                 6***********************865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (116 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        77  (0.0187713); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.14u 0.12s 00:00:00.26 Elapsed: 00:00:00.27
# Mc/sec: 567.06
//
Query:       MMETSP1137-20121227|7236_1  [L=108]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (108 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       140  (0.0341297); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.37
# Mc/sec: 385.27
//
Query:       MMETSP1137-20121227|7237_1  [L=147]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (147 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        60  (0.014627); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.16s 00:00:00.32 Elapsed: 00:00:00.63
# Mc/sec: 307.97
//
Query:       MMETSP1137-20121227|7238_1  [L=452]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.7e-16   55.7   0.0    4.8e-07   27.0   0.0    2.1  2  TIGR00225 prc: C-terminal processing peptidase
    7.6e-13   46.0   0.0    8.5e-06   22.8   0.0    2.0  2  TIGR02037 degP_htrA_DO: peptidase Do
    1.3e-12   45.1   0.0    1.7e-05   21.7   0.0    2.1  2  TIGR00054 TIGR00054: RIP metalloprotease RseP
    1.7e-07   27.5   0.1      0.002   13.9   0.0    2.1  2  TIGR03900 prc_long_Delta: putative carboxyl-terminal-processing protease, deltaproteobacterial
    2.7e-07   27.9   0.0      0.003   14.6   0.0    2.3  2  TIGR02038 protease_degS: periplasmic serine peptidase DegS
    5.2e-07   26.8   0.0    0.00045   17.1   0.0    2.2  2  TIGR02860 spore_IV_B: stage IV sporulation protein B


Domain annotation for each model (and alignments):
>> TIGR00225  prc: C-terminal processing peptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.0   0.0     7e-10   4.8e-07      61      95 ..      90     124 ..      62     135 .. 0.89
   2 !   26.6   0.0     9e-10   6.1e-07      50     134 ..     177     266 ..     162     281 .. 0.86

  Alignments for each domain:
  == domain 1    score: 27.0 bits;  conditional E-value: 7e-10
   TIGR00225  61 ddeivivsplegsPAekagikpgDkIikvdgksva 95 
                 +   vi s+++gsPA+kag+kp D+I++++g++v+
  MMETSP1137-20121227|7238_1  90 KAPAVIYSVIAGSPAAKAGLKPMDRITAINGQPVT 124
                 44679***************************886 PP

  == domain 2    score: 26.6 bits;  conditional E-value: 9e-10
   TIGR00225  50 leGiGiqvqmedd.......eivivsplegsPAekagikpgDkIikvdgksvagmelddavelirGkkgtkvkleieragkkktlelelkre 134
                 +  iGi++ + d+       e ++ +++  sPA++ag+++ D +++v+ + v +   ++a +l++   gt++ l + r++  ++  l+++r+
  MMETSP1137-20121227|7238_1 177 AFTIGITMDTSDNadgaeckEPIVYAVVPRSPAAQAGLHAFDMLLAVNHTRVRST--QHALKLLKEASGTSIYLAVGRPQALHNAALTVQRA 266
                 44589999988888999999999**************************999876..6*********************9878888877775 PP

>> TIGR02037  degP_htrA_DO: peptidase Do
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.8   0.0   1.2e-08   8.5e-06     255     303 ..      87     135 ..      67     156 .. 0.77
   2 !   20.9   0.0   4.6e-08   3.1e-05     248     330 ..     185     266 ..     177     284 .. 0.82

  Alignments for each domain:
  == domain 1    score: 22.8 bits;  conditional E-value: 1.2e-08
   TIGR02037 255 lekakGalvaevlkgspAekaGlkaGDvilkvngkkiksaadlreaigt 303
                  +k+  a++ +v+ gspA+kaGlk  D i+++ng++++  a   + +++
  MMETSP1137-20121227|7238_1  87 ENKKAPAVIYSVIAGSPAAKAGLKPMDRITAINGQPVTCRATAVSLLSK 135
                 3456789******************************987776666655 PP

  == domain 2    score: 20.9 bits;  conditional E-value: 4.6e-08
   TIGR02037 248 dlakslglekakGalvaevlkgspAekaGlkaGDvilkvngkkiksaadlreaigtlkpgkkvklkilRkgkekeikvtlkea 330
                 d+++  + ++ k  +v +v++ spA++aGl+a D++l+vn  +++s+++  + +++ + g+++ l + R  + ++  +t+++a
  MMETSP1137-20121227|7238_1 185 DTSDNADGAECKEPIVYAVVPRSPAAQAGLHAFDMLLAVNHTRVRSTQHALKLLKE-ASGTSIYLAVGRPQALHNAALTVQRA 266
                 55555555556677999*****************************9998877766.57999999999999999988888865 PP

>> TIGR00054  TIGR00054: RIP metalloprotease RseP
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.7   0.0   2.5e-08   1.7e-05     177     260 ..      61     148 ..      53     162 .. 0.74
   2 !   21.4   0.0     3e-08   2.1e-05     195     271 ..     189     265 ..     156     285 .. 0.83

  Alignments for each domain:
  == domain 1    score: 21.7 bits;  conditional E-value: 2.5e-08
   TIGR00054 177 sveilaere....nitleeeke.lkelgpkielvlsdvvdnspaekaGlkeGDkilkidgeklkswrdlvklvkenpeksleikveRng 260
                 +vei+ e+        +e+  + l +   k+ +v+  v   spa+kaGlk+ D+i  i+g++++ + + v+l+ +  +  + ++ +R +
  MMETSP1137-20121227|7238_1  61 QVEISDEHGdgivGLRFEPAAStLARENKKAPAVIYSVIAGSPAAKAGLKPMDRITAINGQPVTCRATAVSLLSK-ANWPITVRAQRMD 148
                 45555444423223345555556778888999*************************************999988.4455566666655 PP

  == domain 2    score: 21.4 bits;  conditional E-value: 3e-08
   TIGR00054 195 lkelgpkielvlsdvvdnspaekaGlkeGDkilkidgeklkswrdlvklvkenpeksleikveRngetlslklvpea 271
                   +  +  e+++  vv+ spa++aGl++ D +l ++ + ++s +   kl+ke ++ s+ ++v R     +  l+ ++
  MMETSP1137-20121227|7238_1 189 NADGAECKEPIVYAVVPRSPAAQAGLHAFDMLLAVNHTRVRSTQHALKLLKEASGTSIYLAVGRPQALHNAALTVQR 265
                 456677889*******************************************************9977777777665 PP

>> TIGR03900  prc_long_Delta: putative carboxyl-terminal-processing protease, deltaproteobacterial
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.4   0.0   1.7e-05     0.012     155     182 ..      95     122 ..      85     153 .. 0.80
   2 !   13.9   0.0   2.9e-06     0.002     154     223 ..     199     266 ..     194     275 .. 0.89

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 1.7e-05
   TIGR03900 155 VlrvlpetPAaraGlkakDrivkidees 182
                 +  v+ ++PAa+aGlk  Dri++i+ + 
  MMETSP1137-20121227|7238_1  95 IYSVIAGSPAAKAGLKPMDRITAINGQP 122
                 5579********************9874 PP

  == domain 2    score: 13.9 bits;  conditional E-value: 2.9e-06
   TIGR03900 154 tVlrvlpetPAaraGlkakDrivkideestvnmdlndavdrlRGpvdtkvtitvrReGldeakrleleRa 223
                 +V  v+p +PAa+aGl+a D ++++++  t   + + a ++l+ + +t + + v R    +  +l+++Ra
  MMETSP1137-20121227|7238_1 199 IVYAVVPRSPAAQAGLHAFDMLLAVNH--TRVRSTQHALKLLKEASGTSIYLAVGRPQALHNAALTVQRA 266
                 57889********************86..677899*********************98788888888887 PP

>> TIGR02038  protease_degS: periplasmic serine peptidase DegS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.1   0.0   5.1e-05     0.035     261     318 ..      74     131 ..      69     152 .. 0.79
   2 !   14.6   0.0   4.3e-06     0.003     277     333 ..     195     250 ..     180     281 .. 0.82

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 5.1e-05
   TIGR02038 261 gedinslsaqllgledlrgivvtevdPngPaaragllvrdvilkldnkevisaeelmd 318
                 g   ++ ++ l   ++    v+  v   +Paa+agl++ d i  +++++v+ + + + 
  MMETSP1137-20121227|7238_1  74 GLRFEPAASTLARENKKAPAVIYSVIAGSPAAKAGLKPMDRITAINGQPVTCRATAVS 131
                 444455555555556777889999*************************998876655 PP

  == domain 2    score: 14.6 bits;  conditional E-value: 4.3e-06
   TIGR02038 277 lrgivvtevdPngPaaragllvrdvilkldnkevisaeelmdrvaelrPgskvlvtv 333
                  +  +v  v P +Paa+agl   d++l ++   v s+++ ++ + e   g+ + ++v
  MMETSP1137-20121227|7238_1 195 CKEPIVYAVVPRSPAAQAGLHAFDMLLAVNHTRVRSTQHALKLLKEAS-GTSIYLAV 250
                 45568999******************************9998877754.55555555 PP

>> TIGR02860  spore_IV_B: stage IV sporulation protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.5   0.0   0.00054      0.37     124     171 ..     102     148 ..      85     180 .. 0.85
   2 !   17.1   0.0   6.6e-07   0.00045     124     207 ..     207     291 ..     204     298 .. 0.79

  Alignments for each domain:
  == domain 1    score: 7.5 bits;  conditional E-value: 0.00054
   TIGR02860 124 sPaeeagiqvGDlilkvngekikeeedvaklineaggeklkltikRkk 171
                 sPa++ag++  D+i+++ng+++       +l+++a+   +++  +R +
  MMETSP1137-20121227|7238_1 102 SPAAKAGLKPMDRITAINGQPVTCRATAVSLLSKAN-WPITVRAQRMD 148
                 8**********************9999999998875.45555555554 PP

  == domain 2    score: 17.1 bits;  conditional E-value: 6.6e-07
   TIGR02860 124 sPaeeagiqvGDlilkvngekikeeedvaklineaggeklkltikRkkkkiekklkpvk..ekeekkyriGlyiRDsaaGvGtltf 207
                 sPa++ag++  D++l+vn ++++++++  kl++ea+g ++ l + R ++  +  l+ ++  +   + +r+ +y R +aa    +tf
  MMETSP1137-20121227|7238_1 207 SPAAQAGLHAFDMLLAVNHTRVRSTQHALKLLKEASGTSIYLAVGRPQALHNAALTVQRawRRAAGVFRL-VYTRSDAASPPAVTF 291
                 8*********************************************988766655444311455666776.677766666555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (452 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        76  (0.0185275); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.39u 0.16s 00:00:00.55 Elapsed: 00:00:00.65
# Mc/sec: 917.83
//
Query:       MMETSP1137-20121227|7240_1  [L=171]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (171 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        43  (0.0104827); expected 82.0 (0.02)
Passed bias filter:                       39  (0.00950756); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.16s 00:00:00.33 Elapsed: 00:00:00.28
# Mc/sec: 806.08
//
Query:       MMETSP1137-20121227|7241_1  [L=1920]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1920 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       169  (0.0411994); expected 82.0 (0.02)
Passed bias filter:                      100  (0.0243784); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 1.10u 0.14s 00:00:01.24 Elapsed: 00:00:01.28
# Mc/sec: 1979.84
//
Query:       MMETSP1137-20121227|7242_1  [L=119]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0054   12.9   0.0     0.0084   12.3   0.0    1.3  1  TIGR01970 DEAH_box_HrpB: ATP-dependent helicase HrpB


Domain annotation for each model (and alignments):
>> TIGR01970  DEAH_box_HrpB: ATP-dependent helicase HrpB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.3   0.0     2e-06    0.0084     720     796 ..       2     114 ..       1     117 [. 0.75

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 2e-06
   TIGR01970 720 ParlevptGseiairYeedke..........................pvlavrlqelfGlaesPrvaqG..........rvkltleLLsPaqrPlqvtkDLasfWkgaykevk 796
                 P++l +p+G ++ ++Y+++                            p l    qelfG  + Pr+a+            v++ +  +  ++  ++ t+DL++fW+ +y + +
  MMETSP1137-20121227|7242_1   2 PTSLRLPSGRHAPLSYATSVFttssegdcvearhlsesdealklcgvPQLVCLPQELFGCIQAPRIADQplcpsnaaevGVAVSMRFVYLGEGVVATTADLTQFWELSYPQLR 114
                 777777777777777777654556667777777777777777788778999999************9752222222211468999************************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (119 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        37  (0.00901999); expected 82.0 (0.02)
Passed bias filter:                       37  (0.00901999); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.17u 0.12s 00:00:00.29 Elapsed: 00:00:00.38
# Mc/sec: 413.33
//
Query:       MMETSP1137-20121227|7243_1  [L=224]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (224 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        44  (0.0107265); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.12s 00:00:00.31 Elapsed: 00:00:00.35
# Mc/sec: 844.73
//
Query:       MMETSP1137-20121227|7245_1  [L=148]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0042   14.0   0.0     0.0053   13.7   0.0    1.1  1  TIGR03674 fen_arch: flap structure-specific endonuclease


Domain annotation for each model (and alignments):
>> TIGR03674  fen_arch: flap structure-specific endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   0.0   1.3e-06    0.0053      71     120 ..      79     128 ..      63     139 .. 0.88

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 1.3e-06
   TIGR03674  71 kgikpvyvFDGkppelKkeeleeRrevreeaeekleealekgdleeaaky 120
                  g + + vFDG+    K+++   R+  ++ a+++  +a+++g+++ a k 
  MMETSP1137-20121227|7245_1  79 VGATIILVFDGHNYPPKQATQGARQADQAAAQQQDIAAQSRGEVAGADKA 128
                 57899**************************************9888775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (148 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        86  (0.0209654); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.16u 0.14s 00:00:00.30 Elapsed: 00:00:00.30
# Mc/sec: 651.15
//
Query:       MMETSP1137-20121227|7247_1  [L=130]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (130 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       238  (0.0580205); expected 82.0 (0.02)
Passed bias filter:                      157  (0.038274); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.15s 00:00:00.32 Elapsed: 00:00:00.41
# Mc/sec: 418.50
//
Query:       MMETSP1137-20121227|7248_1  [L=660]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.1e-29   98.8   0.1    1.2e-28   97.9   0.0    1.4  1  TIGR01963 PHB_DH: 3-hydroxybutyrate dehydrogenase
    6.4e-19   66.4   0.0    1.2e-18   65.5   0.0    1.4  1  TIGR01829 AcAcCoA_reduct: acetoacetyl-CoA reductase
    8.5e-19   66.0   0.0    1.4e-18   65.3   0.0    1.3  1  TIGR01830 3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase
    3.1e-17   60.7   0.0    5.8e-17   59.8   0.0    1.4  1  TIGR02415 23BDH: acetoin reductases
      1e-16   59.0   0.0    1.8e-16   58.2   0.0    1.3  1  TIGR01832 kduD: 2-deoxy-D-gluconate 3-dehydrogenase
    1.8e-15   55.0   1.2    1.6e-14   51.8   0.9    2.3  1  TIGR03971 SDR_subfam_1: oxidoreductase, SDR family
    8.4e-15   52.6   0.9    1.8e-14   51.5   0.7    1.5  1  TIGR03206 benzo_BadH: 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase
    1.3e-09   34.9   1.0    1.9e-09   34.3   0.7    1.2  1  TIGR02632 RhaD_aldol-ADH: rhamnulose-1-phosphate aldolase/alcohol dehydrogenase
    1.1e-08   32.6   0.2    1.9e-08   31.8   0.1    1.4  1  TIGR01831 fabG_rel: putative 3-oxoacyl-(acyl-carrier-protein) reductase
    5.2e-08   30.4   0.0    1.7e-07   28.7   0.0    1.8  1  TIGR01500 sepiapter_red: sepiapterin reductase
    4.1e-07   27.3   0.6    7.3e-07   26.5   0.4    1.3  1  TIGR03325 BphB_TodD: cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase
     0.0071   13.6   0.0       0.15    9.3   0.0    2.8  2  TIGR00068 glyox_I: lactoylglutathione lyase


Domain annotation for each model (and alignments):
>> TIGR01963  PHB_DH: 3-hydroxybutyrate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.9   0.0   3.4e-31   1.2e-28       2     190 ..      82     265 ..      81     273 .. 0.93

  Alignments for each domain:
  == domain 1    score: 97.9 bits;  conditional E-value: 3.4e-31
   TIGR01963   2 kvalvtGaasGiglaiakelaaaGakvvvndleeeaaeaaakeleeaggevlalkadvtkeeeiadlieavaaefgsldi..LvnnAGiqhvapieefptekfekiiavnltsafhtiraalpimkkqgwGriiniasvhglvasafKsaYvaaKHglvGltKvlAlEvAetgitanaicPgyvrtpLvek 190
                 +  l+tG  +G g+ +a+    aG+kvv    +e++a++       a+++++ ++ad+t +e ++++++a+ a++g++ +  LvnnAG+    +++  p++ +e+ +a+n +++++++ a lp +k   +Gr++n++sv+g va +  +aY a+KH+l  ++ vl  E+   ++ + ++ Pg +rtpL e+
  MMETSP1137-20121227|7248_1  82 RCXLLTGCXTGFGRXVAQXALDAGFKVVAACYTEAGAATF------ASTTATIVVADLTTAEGVERVVKAALAAAGDAGLfaLVNNAGLCLPGNVDWLPPDAYERSMALNFHAPVKLTYALLPALKS-TRGRVVNVTSVDGVVALPSTAAYSASKHALEAFSDVLRAEMLPWDVNVVVVEPGTMRTPLAEA 265
                 6789************************998888776655......556788899********************99875559*****************************************986.69**********************************************************886 PP

>> TIGR01829  AcAcCoA_reduct: acetoacetyl-CoA reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.5   0.0   3.5e-21   1.2e-18       2     207 ..      83     281 ..      82     295 .. 0.88

  Alignments for each domain:
  == domain 1    score: 65.5 bits;  conditional E-value: 3.5e-21
   TIGR01829   2 valvtGglgGiGtaickrlakdGykvvanvapneerakewlqekevegfdvavvkadvssfeeakaavakveaelGpvdv..lvnnaGitrdavfkkmtkeqWeevidtnlnsvfnvtrpviegmlergfGriinissvnGlkGqfGqanysaakaGliGftkalaqegakkgvtvnviaPGyiatemvkavredvlkkivaqiPvkr 207
                   l+tG+  G G+ +++   ++G+kvva++++++ +a+ ++ ++ +     ++v ad+++ e  +++v+   a+ G+  +  lvnnaG+     +  +  +++e  ++ n+++  ++t  ++ +++  + Gr++n++sv+G+      a ysa+k  l  f+  l +e    +v v v+ PG + t++ +a  +  l++   + P +r
  MMETSP1137-20121227|7248_1  83 CXLLTGCXTGFGRXVAQXALDAGFKVVAACYTEAGAAT-FA-STTA-----TIVVADLTTAEGVERVVKAALAAAGDAGLfaLVNNAGLCLPGNVDWLPPDAYERSMALNFHAPVKLTYALLPALK-STRGRVVNVTSVDGVVALPSTAAYSASKHALEAFSDVLRAEMLPWDVNVVVVEPGTMRTPLAEAFADGWLRSFR-EAPAER 281
                 6799***************************7765543.33.3333.....46789*******************99775449***************************************9986.568*************************************************************9988777654.345555 PP

>> TIGR01830  3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.3   0.0   4.2e-21   1.4e-18       2     193 ..      85     270 ..      84     290 .. 0.87

  Alignments for each domain:
  == domain 1    score: 65.3 bits;  conditional E-value: 4.2e-21
   TIGR01830   2 lvtGasrgiGkaiakklakegakvviterskeekaeelaeelkeagvkaaavkldvsdeeevkelveeveeelge..idilvnnAGitrDklllrmkeedwdevikvnLkgvfnvtkavlkkmikkrsGriinissvvgllGnagqanYaasKaGligltkslakElasrnitvnavaPGfietdmteklsekv 193
                 l+tG   g G+ +a+   ++g+kvv     +e+     a+++++  ++a++v++d++ +e v+++v+++ +++g+  +  lvnnAG+   + +  +  + +++ +++n ++  ++t a l ++ k+ +Gr++n++sv g++  +  a Y+asK  l +++  l  E+   +++v +v PG ++t++ e++ +  
  MMETSP1137-20121227|7248_1  85 LLTGCXTGFGRXVAQXALDAGFKVVAACY-TEAG----AATFAS--TTATIVVADLTTAEGVERVVKAALAAAGDagLFALVNNAGLCLPGNVDWLPPDAYERSMALNFHAPVKLTYALLPAL-KSTRGRVVNVTSVDGVVALPSTAAYSASKHALEAFSDVLRAEMLPWDVNVVVVEPGTMRTPLAEAFADGW 270
                 89**********************99955.3333....333333..357799******************99996125679***********************************9988776.6678**********************************************************99987765 PP

>> TIGR02415  23BDH: acetoin reductases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.8   0.0   1.7e-19   5.8e-17       3     191 ..      84     266 ..      82     285 .. 0.91

  Alignments for each domain:
  == domain 1    score: 59.8 bits;  conditional E-value: 1.7e-19
   TIGR02415   3 alvtGaaqGiGkaiaerLakdGfavavadlneetaketakelkekgtkavavkldvsdkseveeaveqaveklGe..ldvlvnnaGvalvtpileiteeeleklynvnvkgvlfGiqaaaekfkklkhkGkiinaasiagvegspelsaysstkfavrgltqtaakeLakkgitvnayaPGivktemreei 191
                  l+tG+  G G+ +a+   + Gf+v+ a + e+ a+  a+      t a +v++d+++ + ve++v+ a +  G+  l  lvnnaG++l   ++ + ++  e+  ++n ++ +    a   ++k   ++G+++n +s+ gv++ p  +ays++k+a+ ++  +   e+ +  + v    PG+++t++ e  
  MMETSP1137-20121227|7248_1  84 XLLTGCXTGFGRXVAQXALDAGFKVVAACYTEAGAATFAS------TTATIVVADLTTAEGVERVVKAALAAAGDagLFALVNNAGLCLPGNVDWLPPDAYERSMALNFHAPVKLTYALLPALKS--TRGRVVNVTSVDGVVALPSTAAYSASKHALEAFSDVLRAEMLPWDVNVVVVEPGTMRTPLAEAF 266
                 699*****************************99987664......68999******************999997335679****************************9988777777777764..68*********************************************************98865 PP

>> TIGR01832  kduD: 2-deoxy-D-gluconate 3-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.2   0.0   5.2e-19   1.8e-16       4     194 ..      80     266 ..      78     284 .. 0.88

  Alignments for each domain:
  == domain 1    score: 58.2 bits;  conditional E-value: 5.2e-19
   TIGR01832   4 eGkvalvtGantGlGqgiavglaeaGadivgvgiselsetqekvealGrkflslkadladeeaakalvdeaveeag..kidilvnnaGiirredavefsekdwddvlnvnlkavfllsqavakkllkqGrkgkiiniasllsfqGGirvpsytasksavaGltkllanewakkginvnaiaPGyletnnteal 194
                 +G+  l+tG+ tG+G+ +a    +aG ++v++  +e+  +    +   ++++ + adl+  e+++++v+ a+++ag   +  lvnnaG+    +   ++   ++  + +n++a   l+ a+   +lk+  +g+++n++s+         ++y+ask+a+  ++ +l +e+   ++nv  + PG + t  +ea+
  MMETSP1137-20121227|7248_1  80 NGRCXLLTGCXTGFGRXVAQXALDAGFKVVAACYTEAGAA----TFASTTATIVVADLTTAEGVERVVKAALAAAGdaGLFALVNNAGLCLPGNVDWLPPDAYERSMALNFHAPVKLTYALLP-ALKST-RGRVVNVTSVDGVVALPSTAAYSASKHALEAFSDVLRAEMLPWDVNVVVVEPGTMRTPLAEAF 266
                 6999***************************998765432....33456678899*******************99445778***********9999******************99998765.56666.8*******9988887778889***********************************9877766 PP

>> TIGR03971  SDR_subfam_1: oxidoreductase, SDR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.8   0.9   4.8e-17   1.6e-14      67     205 ..     126     264 ..      79     287 .. 0.90

  Alignments for each domain:
  == domain 1    score: 51.8 bits;  conditional E-value: 4.8e-17
   TIGR03971  67 vlarkadvrkleelravveegveefGr..ldvvvanaGvlsygrafelseeqWdtvldvnlkGvWktvkavvPalierknGGsiiivssvaglkalpglahyaaakhGlvgltktlanelaeygirvnsihPtsvdtamie 205
                 + + +ad+ + e ++ vv+ +++  G   l  +v+naG+   g++  l +++++  + +n++   k   a +Pal   +  G ++ v+sv g++alp +a y+a+kh l ++ + l  e+ ++++ v +++P +++t++ e
  MMETSP1137-20121227|7248_1 126 ATIVVADLTTAEGVERVVKAALAAAGDagLFALVNNAGLCLPGNVDWLPPDAYERSMALNFHAPVKLTYALLPALKSTR--GRVVNVTSVDGVVALPSTAAYSASKHALEAFSDVLRAEMLPWDVNVVVVEPGTMRTPLAE 264
                 45567999999**************97335679*****************************************98777..9********************************************************987 PP

>> TIGR03206  benzo_BadH: 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.5   0.7   5.4e-17   1.8e-14      13     194 ..      91     267 ..      79     276 .. 0.83

  Alignments for each domain:
  == domain 1    score: 51.5 bits;  conditional E-value: 5.4e-17
   TIGR03206  13 ggiggaicrrfaeegakvavldlnaeaaekvaaairekggkaeavavditdrasvdaavaaaeealgpvdv..lvnnagwdvlkpflktekaewerliainltgalymhhavlkgmverkagrivniasdaarvgssgeavyaackgglvafsktlarelarhgitvnvvcpgptdtalledvk 194
                  g g  + +   + g kv        a+ + a+a + +  +a  v +d+t  + v+  v aa  a g + +  lvnnag    ++     +  +er +a+n+   + + +a+l+ + +  +gr+vn++s  + v     a y+a k  l afs  l  e+   ++ v vv pg   t+l e ++
  MMETSP1137-20121227|7248_1  91 TGFGRXVAQXALDAGFKVV------AACYTEAGAATFASTTATIVVADLTTAEGVERVVKAALAAAGDAGLfaLVNNAGLCLPGNVDWLPPDAYERSMALNFHAPVKLTYALLPAL-KSTRGRVVNVTSVDGVVALPSTAAYSASKHALEAFSDVLRAEMLPWDVNVVVVEPGTMRTPLAEAFA 267
                 5555444444444444443......23344455555566789999*****************999998875449****************************************97.5678*********************************************************988765 PP

>> TIGR02632  RhaD_aldol-ADH: rhamnulose-1-phosphate aldolase/alcohol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.3   0.7   5.7e-12   1.9e-09     415     599 ..      82     258 ..      77     296 .. 0.85

  Alignments for each domain:
  == domain 1    score: 34.3 bits;  conditional E-value: 5.7e-12
   TIGR02632 415 rvalvtGgasGiGrevarrlvdeGahvvladldaeaaeavaaelvdkfGadkavalkldvtdeeavkaafaevalayG..GvdivvnnaGiavskpleeteleeWdlnldilatGyflvareaarllrkqglggnlvfiasknavvakknalaysaakaaeahlvrllaielaelgirvntvaPdav 599
                 r  l+tG  +G Gr va+   d G  vv a   ++ a++        f + +a  +++d+t  e v+ +++++  a G  G+ ++vnnaG+    +++    + ++++++++      +    a l   +++ g +v ++s+++vva +++ aysa+k a      +l +e+ +  + v  v+P ++
  MMETSP1137-20121227|7248_1  82 RCXLLTGCXTGFGRXVAQXALDAGFKVVAACYTEAGAAT--------FASTTATIVVADLTTAEGVERVVKAALAAAGdaGLFALVNNAGLCLPGNVDWLPPDAYERSMALNFHAPVKL--TYALLPALKSTRGRVVNVTSVDGVVALPSTAAYSASKHALEAFSDVLRAEMLPWDVNVVVVEPGTM 258
                 77899**********************998776555443........34566788999****9999999999888877669999***********************999998766444..445555567899***************************999*******************99876 PP

>> TIGR01831  fabG_rel: putative 3-oxoacyl-(acyl-carrier-protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.8   0.1   5.5e-11   1.9e-08       2     193 ..      85     269 ..      84     288 .. 0.83

  Alignments for each domain:
  == domain 1    score: 31.8 bits;  conditional E-value: 5.5e-11
   TIGR01831   2 lvtgasrgigraialklaadgfeiavhyrsdradaeesvaairaqggnarllkfdvadrvavrevleadiaehg..ayygvvlnagiardaafpalseedwdavietnldgfynvihplvmpmirarkggriitlasvsgvmgnrgqvnysaakagligatkalavelakrkitvnciapglidtemvaevekd 193
                 l+tg+  g gr +a+    +gf++   + +++ +a    a+     ++a ++  d++  + v  v++a +a+ g    + +v nag+        l  + ++  +  n+ +   +    ++p ++  + gr++ ++sv gv+       ysa+k  l   +  l  e+    + v  + pg + t + +   + 
  MMETSP1137-20121227|7248_1  85 LLTGCXTGFGRXVAQXALDAGFKVVAACYTEAGAAT--FAS-----TTATIVVADLTTAEGVERVVKAALAAAGdaGLFALVNNAGLCLPGNVDWLPPDAYERSMALNFHAPVKLTY-ALLPALKSTR-GRVVNVTSVDGVVALPSTAAYSASKHALEAFSDVLRAEMLPWDVNVVVVEPGTMRTPLAEAFADG 269
                 79***********************99998876654..333.....455666667777777777777777766632589***************************99999887665.5678888765.7*****************************************************99988776655 PP

>> TIGR01500  sepiapter_red: sepiapterin reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.7   0.0     5e-10   1.7e-07       3     200 ..      84     262 ..      82     268 .. 0.83

  Alignments for each domain:
  == domain 1    score: 28.7 bits;  conditional E-value: 5e-10
   TIGR01500   3 llvtGasrGfGrelaqelakrlkaegsvlvLlaRndeaLkeskaeieaevsalsvdlvsldleaakdvedllkaleesikkeeyerillinnaGtlgdvskrekelsDsknvqkyydsnvtslvvltsellkklkelqglektvvnlssLcaikpfkswalYCaskaaRdmffqvLaleek.edvkvLnYapGvlDtdm 200
                  l+tG   GfGr +aq         g ++v      ea   + a+ +a         v +dl +a++ve ++ka ++ ++  ++    l+nnaG       ++++    +  ++  ++n  + v lt  ll +lk   +    vvn+ s+  + +++s a Y ask a + f  vL  e    dv v+   pG + t +
  MMETSP1137-20121227|7248_1  84 XLLTGCXTGFGRXVAQXALD----AGFKVVAACYT-EAGAATFASTTA-------TIVVADLTTAEGVERVVKAALAAAGDAGL--FALVNNAGLCL---PGNVDWLPPDAYERSMALNFHAPVKLTYALLPALK---STRGRVVNVTSVDGVVALPSTAAYSASKHALEAFSDVLRAEMLpWDVNVVVVEPGTMRTPL 262
                 58999999999999998666....67777654443.333333333332.......44568***************999999988..5789****754...355667788999***********************...88899************************************99889999999999998865 PP

>> TIGR03325  BphB_TodD: cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.5   0.4   2.1e-09   7.3e-07       6     191 ..      82     262 ..      79     269 .. 0.82

  Alignments for each domain:
  == domain 1    score: 26.5 bits;  conditional E-value: 2.1e-09
   TIGR03325   6 evvlvtggasglgralvdrfvaegarvavldksaagleeleaahgdkvvgvegdvrllddhkeavarcveafgk..ldtlipnagiwdystalvdipddrideafdevfeinvkgyllavkaalpalvasrgsviftvsnagfypngggalytaakhavvglvkelayelapy.vrvngvapgglstdl 191
                 +  l+tg  +g+gr + +  +  g +v     ++ag   + ++ +  vv+   d  + +  ++ v+  ++a g   l +l++nag+     ++  +p d     ++  + +n ++ ++   a lpal ++rg v+   s  g  +    a y+a+kha+  +   l  e+ p  v v  v pg + t l
  MMETSP1137-20121227|7248_1  82 RCXLLTGCXTGFGRXVAQXALDAGFKVVAACYTEAGAATFASTTATIVVA---DLTTAEGVERVVKAALAAAGDagLFALVNNAGLCL-PGNVDWLPPDA----YERSMALNFHAPVKLTYALLPALKSTRGRVVNVTSVDGVVALPSTAAYSASKHALEAFSDVLRAEMLPWdVNVVVVEPGTMRTPL 262
                 56899**********************99999999999999888777665...777777777777777777775236789*****963.33344467765....555566666666777889***********************************************999549999*******9877 PP

>> TIGR00068  glyox_I: lactoylglutathione lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.3   0.0   0.00045      0.15      19     142 ..     380     498 ..     376     502 .. 0.77
   2 ?    0.1   0.0      0.31   1.1e+02      89     111 ..     605     627 ..     578     642 .. 0.83

  Alignments for each domain:
  == domain 1    score: 9.3 bits;  conditional E-value: 0.00045
   TIGR00068  19 lhtmlrvgdldksldfytevlGmkllrkkdfpeekfslaflgyedessaavieL.tynwgtekydlGn....gfGhiaiavddvykacervkakGgkvvrepgpvkggtkviafvkDPDGykiellekk 142
                  h+ + v  l++sl fy + lGm+      fp+      fl+ + +     + L   n  +++   G     g   + i   dv + + r+ ++G + +      ++ + +ia   DPD y + l+e k
  MMETSP1137-20121227|7248_1 380 SHVTVDVSSLKASLPFYEK-LGMQ-----AFPSSVAGAQFLAAGATGRRQPLLLlRENATMTE--RGPtwlaGMPRLCIYSTDVDADVRRLAEAGLEPMAPV--AEDAMAKIAAYYDPDRYVVYLIEFK 498
                 6888889999999999976.8997.....4777788888999988877665554045544443..333345589999******************9977555..78899**************999866 PP

  == domain 2    score: 0.1 bits;  conditional E-value: 0.31
   TIGR00068  89 hiaiavddvykacervkakGgkv 111
                  ++iav+dv +a ++  a+G +v
  MMETSP1137-20121227|7248_1 605 SVTIAVNDVNAALDAAAAAGMRV 627
                 57899*********999999887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (660 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       253  (0.0616772); expected 82.0 (0.02)
Passed bias filter:                      127  (0.0309605); expected 82.0 (0.02)
Passed Vit filter:                        26  (0.00633837); expected 4.1 (0.001)
Passed Fwd filter:                        12  (0.0029254); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.57u 0.16s 00:00:00.73 Elapsed: 00:00:00.64
# Mc/sec: 1361.14
//
Query:       MMETSP1137-20121227|7249_1  [L=126]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (126 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        64  (0.0156021); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.13s 00:00:00.30 Elapsed: 00:00:00.31
# Mc/sec: 536.47
//
Query:       MMETSP1137-20121227|7251_1  [L=82]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (82 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        94  (0.0229157); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.14s 00:00:00.27 Elapsed: 00:00:00.28
# Mc/sec: 386.54
//
Query:       MMETSP1137-20121227|7252_1  [L=192]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (192 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        62  (0.0151146); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.16s 00:00:00.34 Elapsed: 00:00:00.55
# Mc/sec: 460.76
//
Query:       MMETSP1137-20121227|7253_1  [L=189]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (189 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       157  (0.038274); expected 82.0 (0.02)
Passed bias filter:                      140  (0.0341297); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.13s 00:00:00.33 Elapsed: 00:00:00.46
# Mc/sec: 542.30
//
Query:       MMETSP1137-20121227|7254_1  [L=223]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (223 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        81  (0.0197465); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.18s 00:00:00.38 Elapsed: 00:00:01.05
# Mc/sec: 280.32
//
Query:       MMETSP1137-20121227|7255_1  [L=313]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (313 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        81  (0.0197465); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.18s 00:00:00.44 Elapsed: 00:00:00.65
# Mc/sec: 635.58
//
Query:       MMETSP1137-20121227|7256_1  [L=447]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (447 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       147  (0.0358362); expected 82.0 (0.02)
Passed bias filter:                       96  (0.0234032); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.16s 00:00:00.48 Elapsed: 00:00:00.33
# Mc/sec: 1787.85
//
Query:       MMETSP1137-20121227|7257_1  [L=37]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (37 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        22  (0.00536324); expected 82.0 (0.02)
Passed bias filter:                       22  (0.00536324); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.17s 00:00:00.29 Elapsed: 00:00:00.28
# Mc/sec: 168.40
//
Query:       MMETSP1137-20121227|7258_1  [L=43]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (43 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        82  (0.0199902); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.13s 00:00:00.25 Elapsed: 00:00:00.28
# Mc/sec: 195.71
//
Query:       MMETSP1137-20121227|7259_1  [L=139]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (139 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        46  (0.011214); expected 82.0 (0.02)
Passed bias filter:                       40  (0.00975134); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.16s 00:00:00.31 Elapsed: 00:00:00.30
# Mc/sec: 611.55
//
Query:       MMETSP1137-20121227|7261_1  [L=62]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (62 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       378  (0.0921502); expected 82.0 (0.02)
Passed bias filter:                      126  (0.0307167); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.19s 00:00:00.34 Elapsed: 00:00:00.28
# Mc/sec: 282.18
//
Query:       MMETSP1137-20121227|7262_1  [L=40]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (40 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        38  (0.00926377); expected 82.0 (0.02)
Passed bias filter:                       30  (0.00731351); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.17s 00:00:00.27 Elapsed: 00:00:00.34
# Mc/sec: 155.28
//
Query:       MMETSP1137-20121227|7263_1  [L=206]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (206 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        39  (0.00950756); expected 82.0 (0.02)
Passed bias filter:                       36  (0.00877621); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.16s 00:00:00.36 Elapsed: 00:00:00.28
# Mc/sec: 971.06
//
Query:       MMETSP1137-20121227|7264_1  [L=682]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.2e-19   65.0   0.5    4.7e-15   52.6   0.0    2.4  2  TIGR02956 TMAO_torS: TMAO reductase sytem sensor TorS
    0.00044   17.4   0.1    0.00077   16.6   0.0    1.4  1  TIGR02875 spore_0_A: sporulation transcription factor Spo0A
     0.0007   16.5   1.0     0.0083   13.0   0.0    2.5  2  TIGR01386 cztS_silS_copS: heavy metal sensor kinase


Domain annotation for each model (and alignments):
>> TIGR02956  TMAO_torS: TMAO reductase sytem sensor TorS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.3   0.1   2.1e-05     0.028     584     606 ..     349     371 ..     278     377 .. 0.90
   2 !   52.6   0.0   3.5e-18   4.7e-15     667     824 ..     379     535 ..     376     555 .. 0.85

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 2.1e-05
   TIGR02956 584 liNlvgNaiKFTdrGsvvlrvsl 606
                 l Nl  Na KFT++G+v++r+ +
  MMETSP1137-20121227|7264_1 349 LLNLTVNALKFTSKGHVTIRTAM 371
                 89******************987 PP

  == domain 2    score: 52.6 bits;  conditional E-value: 3.5e-18
   TIGR02956 667 eSelgkGScFafelplergkkaeksatkevidvpparvLlvEDNevnamvaqglleklGhkvt.laesgksAleclee..kaFDlallDinLpDtdGvtLlkqLkeleeake...elkfiavsAhvfnedvekylaagFdgflaKPlsekqLvatlakilegkk 824
                 eSelg+G   +f+lp+e++  +  ++    ++ + arv++v+D  + a+ a++++++lGhkv  la +g++Al+ l++   + D++++D+++p + G + +k  ++ e+++    +l++ a + +v + dv+ y++a   + + KP++ ++      +il+g+k
  MMETSP1137-20121227|7264_1 379 ESELGVGTFCTFDLPFEKAPDVVAQE---ITEAHEARVMIVDDVDLIAEGAAEVVASLGHKVAyLASNGAEALKILKQhhAHIDVVFMDVQMPVMRGDEAAKLYRAWEAEHYdepQLRIYACTGNVTTTDVDAYVSAASTAAVGKPVQPHTYE----VILNGQK 535
                 79***************998776554...58999***************************9648999********9964468**************9988877777776557655*******************************987654....4444444 PP

>> TIGR02875  spore_0_A: sporulation transcription factor Spo0A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0   5.6e-07   0.00077       3      89 ..     411     500 ..     409     543 .. 0.80

  Alignments for each domain:
  == domain 1    score: 16.6 bits;  conditional E-value: 5.6e-07
   TIGR02875   3 irivivddnkefvellkeylaaqedlevvGvaknGvealelikekkp..dvvvldiimpyldG..lgvleklaeielkakpkvlllsavGq 89 
                  r++ivdd   ++e  +e +a+    +v+ +a nG eal+++k+++   dvv +d+ mp + G   + l +  e e+  +p++ + +  G+
  MMETSP1137-20121227|7264_1 411 ARVMIVDDVDLIAEGAAEVVASL-GHKVAYLASNGAEALKILKQHHAhiDVVFMDVQMPVMRGdeAAKLYRAWEAEHYDEPQLRIYACTGN 500
                 68999999888888888877765.568999*************98644499**********762256677777777777787777776665 PP

>> TIGR01386  cztS_silS_copS: heavy metal sensor kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   0.0   6.1e-06    0.0083     237     261 ..     159     183 ..     153     190 .. 0.91
   2 ?    1.1   0.0     0.024        32     357     376 ..     348     366 ..     346     382 .. 0.81

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 6.1e-06
   TIGR01386 237 afqrlsqFsadlAHelRtPltnLlt 261
                  f+ l+ F + + H+lRtPl  L+ 
  MMETSP1137-20121227|7264_1 159 MFRSLQTFTQSIGHDLRTPLQALMF 183
                 6999*******************95 PP

  == domain 2    score: 1.1 bits;  conditional E-value: 0.024
   TIGR01386 357 alsNLlsNAlrytpegstie 376
                 al NL  NAl++t++g   +
  MMETSP1137-20121227|7264_1 348 ALLNLTVNALKFTSKGHV-T 366
                 789***********9863.3 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (682 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       157  (0.038274); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.50u 0.15s 00:00:00.65 Elapsed: 00:00:00.61
# Mc/sec: 1475.68
//
Query:       MMETSP1137-20121227|7265_1  [L=85]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (85 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        39  (0.00950756); expected 82.0 (0.02)
Passed bias filter:                       26  (0.00633837); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:00.28
# Mc/sec: 386.86
//
Query:       MMETSP1137-20121227|7266_1  [L=238]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (238 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        82  (0.0199902); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.16s 00:00:00.36 Elapsed: 00:00:00.31
# Mc/sec: 1013.34
//
Query:       MMETSP1137-20121227|7269_1  [L=144]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (144 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       189  (0.0460751); expected 82.0 (0.02)
Passed bias filter:                      105  (0.0255973); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.11s 00:00:00.28 Elapsed: 00:00:00.42
# Mc/sec: 452.53
//
Query:       MMETSP1137-20121227|7271_1  [L=109]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (109 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        51  (0.012433); expected 82.0 (0.02)
Passed bias filter:                       41  (0.00999512); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.14s 00:00:00.30 Elapsed: 00:00:00.43
# Mc/sec: 334.58
//
Query:       MMETSP1137-20121227|7272_1  [L=521]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   6.8e-113  375.1   0.2   8.7e-113  374.8   0.1    1.0  1  TIGR00483 EF-1_alpha: translation elongation factor EF-1, subunit alpha
    3.3e-43  146.1   0.0    6.8e-43  145.1   0.0    1.5  1  TIGR02034 CysN: sulfate adenylyltransferase, large subunit
    1.7e-35  120.3   0.0    4.3e-35  119.0   0.0    1.5  1  TIGR00485 EF-Tu: translation elongation factor Tu
      9e-26   88.5   0.1    4.2e-12   43.4   0.0    2.3  2  TIGR00475 selB: selenocysteine-specific translation elongation factor
    5.2e-12   42.6   0.0    1.6e-11   41.0   0.0    1.7  1  TIGR01394 TypA_BipA: GTP-binding protein TypA/BipA
    9.5e-11   39.3   0.0    8.4e-09   32.9   0.0    2.8  2  TIGR03680 eif2g_arch: translation initiation factor 2, gamma subunit
    1.2e-08   31.6   0.0    0.00041   16.6   0.0    2.5  2  TIGR01393 lepA: GTP-binding protein LepA
    3.2e-08   30.0   0.0    5.2e-08   29.3   0.0    1.2  1  TIGR00484 EF-G: translation elongation factor G
     0.0029   13.9   0.0     0.0048   13.2   0.0    1.3  1  TIGR00503 prfC: peptide chain release factor 3


Domain annotation for each model (and alignments):
>> TIGR00483  EF-1_alpha: translation elongation factor EF-1, subunit alpha
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  374.8   0.1  1.9e-115  8.7e-113      15     425 ..      60     508 ..      58     510 .. 0.92

  Alignments for each domain:
  == domain 1    score: 374.8 bits;  conditional E-value: 1.9e-115
   TIGR00483  15 hvdsgkstlvgrllyeagaiderlleklkkeaeekgkasfefayvldklkeerergvtidvahkkfetdkyevtivdapghrdfiknmitgasqadaavlvvavddgele...........vqpqtrehvllartlgikqlivainkmdsvn...ydeekfeelkkevsellkkvgykpd....evefipvsaykgdnvvkksenapwyk............gktllealdkl.eapekpvdkplripiqdvysitgvgtvpvgrvetgvlkkgekvvfepag.....vsgevksiemhheqieqaepgdnigfnvrgvskkdirr.gdvagdadn.ppkvakeftaqivvlqhpgaitvgytpvldahtaqvacrfvellkkldprtgkvkeenpkflktgdaaivklkptkplviekvkeipklgrfairdmgqtvaagvvidvkkk 425
                  vdsgkst++grll+e g+i+er +eklk ea+  gk+sf fa+ +d+ keerergvti  + k f t+k++ ti+ apghrdfiknmi+ga+qad+a l+v +d + +            vq+qtr+h+ l   lg+kqli+ +nkmd+     y++ +++e+  e+ ++l kvg+k d    +v+ +p+s++ gdn+ kksen+ w++             +tl + l+++  +p +    p+r+p+  +y+i gvg v  grve g++k+ e+vvf p+        g+v +iemhh + e a+pgdn+g+n++g+ k+++ r gdv   +++     + +f+aqi  l+ pg+i  gy+p+  +   + acr ve+  k+ + tg +k enp+ lk+ + a v ++p +plv++ +k+   l r+a  d + +v  g v  v++k
  MMETSP1137-20121227|7272_1  60 QVDSGKSTTTGRLLFELGGIPEREMEKLKAEADRLGKSSFAFAFYMDRQKEERERGVTISCTTKEFFTEKWHYTIIXAPGHRDFIKNMISGAAQADVAXLMVPADGNFTTaiqkgnhkageVQGQTRQHARLXNLLGVKQLIIGVNKMDTDTagpYSKARYDEVGGEMKNMLIKVGWKKDfvekSVPVLPLSGWMGDNLNKKSENMSWWEgvdvlvekttmhINTLYDCLNDMcSPPGRNETSPMRLPVSGIYKIKGVGDVLAGRVEQGLVKPNEEVVFMPTNtpanpCGGKVFTIEMHHTRHEVAKPGDNVGLNIKGLDKQNMPRvGDVMIYKKDkSLDQCGQFSAQIQTLDIPGEIKLGYSPIGFVRCGRSACRAVEFKFKVGKETGGKKMENPHSLKSNEMAEVVFRPQRPLVVDSFKNCEGLSRIAFLDGNTAVMLGKVTTVVSK 508
                 59**************************************************************************************************997765433356677778888****************************854344*********************997522227899**********************999***9999998999999976527889999**************************************9876222224689******************************995559**8766554899****************************************************************************************************999888765 PP

>> TIGR02034  CysN: sulfate adenylyltransferase, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  145.1   0.0   1.5e-45   6.8e-43       8     400 ..      60     498 ..      57     503 .. 0.81

  Alignments for each domain:
  == domain 1    score: 145.1 bits;  conditional E-value: 1.5e-45
   TIGR02034   8 svddGkstliGrllhdtkqiledqlaalerdskkkgtegeeidlallvdGlqaereqgitidvayryfstdkrkfivadtPGheqytrnmatgastadlavllvda........rkG......vleqtrrhsiiasllGikhvvlavnkidlvd...ydeevfeeikkdylalaeklg......vsdvtviPlsalkGdnvveksesmpWyeGptllevletveve...........e..saeeeelrlpvqyvnrpnldfrGyaGtiasGsvkvGdevvvlpsgres.....rvarivtfdgelekaeaGeavtlvle..deidisr.Gdl.laaadeapevadqfaaelvwlad.eallpGksyk..lklgtkkvrasvaeikhkvdvnt..lekeaakelelneiglvklsldeeialdayeenrttGafilidrlsnat 400
                  vd Gkst  Grll++   i e ++++l+ ++ + g++     +a+ +d  + ere+g+ti  + + f t+k ++ +  +PGh  + +nm+ ga+ ad+a l+v a        +kG      v+ qtr+h+ +  llG+k++++ vnk+d      y+++ ++e+  + +++  k+g       ++v v+Pls+  Gdn+ +kse+m W+eG+ +l    t++++              + e++++rlpv  + + +     +aG +  G vk+ +evv +p ++ +     +v  i   +   e a+ G+ v l ++  d+ ++ r Gd+ + ++d++++   qf+a++ +l+    ++ G s    ++ g +  ra   e k+kv  +t   + e+ ++l+ ne+++v    ++++++d++++ + +  + ++d  +   
  MMETSP1137-20121227|7272_1  60 QVDSGKSTTTGRLLFELGGIPEREMEKLKAEADRLGKSS--FAFAFYMDRQKEERERGVTISCTTKEFFTEKWHYTIIXAPGHRDFIKNMISGAAQADVAXLMVPAdgnfttaiQKGnhkageVQGQTRQHARLXNLLGVKQLIIGVNKMDTDTagpYSKARYDEVGGEMKNMLIKVGwkkdfvEKSVPVLPLSGWMGDNLNKKSENMSWWEGVDVLVEKTTMHINtlydclndmcsPpgRNETSPMRLPVSGIYKIKGVGDVLAGRVEQGLVKPNEEVVFMPTNTPAnpcggKVFTIEMHHTRHEVAKPGDNVGLNIKglDKQNMPRvGDVmIYKKDKSLDQCGQFSAQIQTLDIpGEIKLGYSPIgfVRCGRSACRA--VEFKFKVGKETggKKMENPHSLKSNEMAEVVFRPQRPLVVDSFKNCEGLSRIAFLDGNTAVM 498
                 69*******************************999887..99*************************************************************8744444444344444446788*************************7533449********999998877764111111567999***********************98886655555542221111111112246789***********9999999********************998762223368888888899999*********98755566776669962568999**************99525688887754226666555555..566666665551156778899************************99999999999877665 PP

>> TIGR00485  EF-Tu: translation elongation factor Tu
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  119.0   0.0   9.5e-38   4.3e-35      49     312 ..     104     411 ..      88     416 .. 0.81

  Alignments for each domain:
  == domain 1    score: 119.0 bits;  conditional E-value: 9.5e-38
   TIGR00485  49 eidkapeekargitintahveyetekrhyahvdcpghadyvknmitgaaqmdgailvvsa..............adgpmpqtrehillarqvgvpklvvflnkvdlvdde....ellelvelevrellse....ydfpgddvpivrgsal..kale..............gdaeweekilelmeavdeyiptperevdkpfllaiedvfsitgrgtvvtgrvergevkvgeeveivglketkk...ttvtgvemfkklldeakagdnvgvllrgvkkeeier.g..qvlakpgsikphkkfeaevyvl 312
                  +d+  ee++rg+ti++++ e+ tek hy+ +  pgh d++knmi+gaaq d a l+v a              a  +  qtr+h  l + +gv +l++ +nk+d  +         + v  e++++l +    +df  + vp++  s      l+                ++ + +i  l + ++++   p r+   p+ l++  ++ i+g g v +grve+g vk +eev  +  ++  +     v  +em +   + ak gdnvg+ ++g++k+++ r g  ++  k  s+    +f+a++  l
  MMETSP1137-20121227|7272_1 104 YMDRQKEERERGVTISCTTKEFFTEKWHYTIIXAPGHRDFIKNMISGAAQADVAXLMVPAdgnfttaiqkgnhkAGEVQGQTRQHARLXNLLGVKQLIIGVNKMDTDTAGpyskARYDEVGGEMKNMLIKvgwkKDFVEKSVPVLPLSGWmgDNLNkksenmswwegvdvLVEKTTMHINTLYDCLNDMCSPPGRNETSPMRLPVSGIYKIKGVGDVLAGRVEQGLVKPNEEVVFMPTNTPANpcgGKVFTIEMHHTRHEVAKPGDNVGLNIKGLDKQNMPRvGdvMIYKKDKSLDQCGQFSAQIQTL 411
                 479999***************************************************97633322222222111223567************************9876532222567889999999997522226788889***8655441144547778888988766555677778999999**************************************************99998655422257999****************************98865224456889999999999999876 PP

>> TIGR00475  selB: selenocysteine-specific translation elongation factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.5   0.0   1.7e-14   7.7e-12      26     132 ..     106     231 ..     101     241 .. 0.78
   2 !   43.4   0.0   9.1e-15   4.2e-12     172     259 ..     299     393 ..     274     414 .. 0.81

  Alignments for each domain:
  == domain 1    score: 42.5 bits;  conditional E-value: 1.7e-14
   TIGR00475  26 drlPeEkKRGltiDlGyaylpledkvlgliDvPGHekflknalagvggidaalLvvdad........eG......vkaqtkEHLavlkllgikelivvltKaDr.....vdeeevkevEeelkeil 132
                 dr  eE+ RG+ti      +  e+   ++i +PGH  f+kn+++g + +d a L+v ad         G      v+ qt+ H ++ +llg+k+li+ ++K+D        +++ +ev  e+k++l
  MMETSP1137-20121227|7272_1 106 DRQKEERERGVTISCTTKEFFTEKWHYTIIXAPGHRDFIKNMISGAAQADVAXLMVPADgnfttaiqKGnhkageVQGQTRQHARLXNLLGVKQLIIGVNKMDTdtagpYSKARYDEVGGEMKNML 231
                 67889***************************************************8873333333322333334678************************962211123455566666666555 PP

  == domain 2    score: 43.4 bits;  conditional E-value: 9.1e-15
   TIGR00475 172 dkqkplrlaiDraFkvKGaGtvvtGtafsGevkvgDelvlepinkkv.....rvkalqaqnqsvekavAGqRialnladvdkeklkRG..llilk 259
                 +  +p+rl++  ++k+KG+G v+ G + +G vk ++e+v  p+n +      +v +++ +++  e a  G+ ++ln++++dk+++ R   ++i k
  MMETSP1137-20121227|7272_1 299 NETSPMRLPVSGIYKIKGVGDVLAGRVEQGLVKPNEEVVFMPTNTPAnpcggKVFTIEMHHTRHEVAKPGDNVGLNIKGLDKQNMPRVgdVMIYK 393
                 6789****************************************986555559********************************9954743332 PP

>> TIGR01394  TypA_BipA: GTP-binding protein TypA/BipA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.0   0.0   3.5e-14   1.6e-11      37     270 ..     103     371 ..      61     398 .. 0.76

  Alignments for each domain:
  == domain 1    score: 41.0 bits;  conditional E-value: 3.5e-14
   TIGR01394  37 rvmDsndlererGitilakntavkykdtkinivDtPGhaDfGGevervlsmvdgvlllvDa.............seG.plpqtrfvlkkalelgl.kpivvinkiDrp......darpeevvdevfdLfvelgaddeqld..fpvvyasakeGvasle..............eedesedleplfdailehvpaPkadkdeplqllvttldydeylGriaigrverGkvkkgqqvallkkdgkiekariskllafeglerveideaeaGdiv 270
                   mD +  ererG+ti + +     ++ +  i+ +PGh Df  ++       d + l+v a             + G +  qtr   +    lg  + i+ +nk+D +      +ar +ev  e+ ++++++g +++ ++  +pv+  s+  G    +               e+++ +++ l+d + ++  +P  ++ +p++l v+ + + + +G ++ grve+G vk +++v ++ ++   +     k++++  +++++ + a+ Gd v
  MMETSP1137-20121227|7272_1 103 FYMDRQKEERERGVTISCTTKEFFTEKWHYTIIXAPGHRDFIKNMISGAAQADVAXLMVPAdgnfttaiqkgnhKAGeVQGQTRQHARLXNLLGVkQLIIGVNKMDTDtagpysKARYDEVGGEMKNMLIKVGWKKDFVEksVPVLPLSGWMGDNLNKksenmswwegvdvlVEKTTMHINTLYDCLNDMCSPPGRNETSPMRLPVSGIYKIKGVGDVLAGRVEQGLVKPNEEVVFMPTNTPANP-CGGKVFTI-EMHHTRHEVAKPGDNV 371
                 57***************************************999999999999999999772222222211111123234688877665544444156788*****8622223257999****************998873367777787777654446789999*99999878888999******************************************************99987743332.22333332.2344445556666655 PP

>> TIGR03680  eif2g_arch: translation initiation factor 2, gamma subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.9   0.0   1.8e-11   8.4e-09      14     151 ..      61     213 ..      58     264 .. 0.66
   2 ?    2.9   0.0     0.024        11     228     292 ..     317     374 ..     275     383 .. 0.78

  Alignments for each domain:
  == domain 1    score: 32.9 bits;  conditional E-value: 1.8e-11
   TIGR03680  14 vDhGkttlvkalt...GvwtdthseelkrgisiklGyadaei..kkceeceepeaytteekceecgsetellrkvsfvDaPGhetLmatmlsGaalmdgalLviaaneevP.............qpqtkehlvaleiigiknivivqnkidlvske 151
                 vD Gk+t++  l    G   ++  e l ++ + +lG   + +  + ++++ee e+ +t  +c++ +    ++ + +++ aPGh  ++  m+sGaa  d a L++ a+ ++              q qt++h    +++g+k+++i  nk+d  +  
  MMETSP1137-20121227|7272_1  61 VDSGKSTTTGRLLfelGGIPEREMEKL-KAEADRLGKSSFAFafYMDRQKEERERGVT-ISCTTKE-FFTEKWHYTIIXAPGHRDFIKNMISGAAQADVAXLMVPADGNFTtaiqkgnhkagevQGQTRQHARLXNLLGVKQLIIGVNKMDTDTAG 213
                 888888888776422244444555544.456779998877651144555554444443.3466533.3345567789***************************9875543222222222233378*************************86654 PP

  == domain 2    score: 2.9 bits;  conditional E-value: 0.024
   TIGR03680 228 kGGviGGslvqGklkvgdeieirPGikvekegkteyepiltevtsleagkkkveeakPgGlvavg 292
                 +G v+ G + qG +k ++e+   P            +p   +v  +e+ +++ e akPg  v++ 
  MMETSP1137-20121227|7272_1 317 VGDVLAGRVEQGLVKPNEEVVFMPTNTPA-------NPCGGKVFTIEMHHTRHEVAKPGDNVGLN 374
                 578*****************999975554.......48999999999999999999999998876 PP

>> TIGR01393  lepA: GTP-binding protein LepA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0   9.1e-07   0.00041      12     103 ..      61     163 ..      58     172 .. 0.75
   2 !   12.0   0.0   2.4e-05     0.011     162     284 ..     276     401 ..     266     410 .. 0.79

  Alignments for each domain:
  == domain 1    score: 16.6 bits;  conditional E-value: 9.1e-07
   TIGR01393  12 idhGkstladrllektkavserelke.....q...........lldsldlererGitikaqavrlkykakdgeeyvlnlidtPGhvdfsyevsrslaaceGalllvda 103
                 +d Gkst + rll + + + ere+++                 ++d+   ererG+ti  ++ ++ +     e+++  +i +PGh df  ++    a ++ a l+v a
  MMETSP1137-20121227|7272_1  61 VDSGKSTTTGRLLFELGGIPEREMEKlkaeaDrlgkssfafafYMDRQKEERERGVTISCTTKEF-F----TEKWHYTIIXAPGHRDFIKNMISGAAQADVAXLMVPA 163
                 89999999999999999999999874222221222222333336888889********8876543.3....46789999*********99988888888888888876 PP

  == domain 2    score: 12.0 bits;  conditional E-value: 2.4e-05
   TIGR01393 162 aktGigieelleaivkkvpaPkgdkeaplkalifdsvydayrGvvvyvrvveGkikkgdkikllstgkeyeveevgvltpkl..vkeeelkaGe.vGyliagikdvkdvkvGdtitsvkkpakeal 284
                  kt + i+ l + + +  ++P  ++++p++  +   +  +  G v+  rv +G +k+++++ ++ t++  +     v+t+++  +++e  k G+ vG  i g+ + +  +vGd +   k+++ ++ 
  MMETSP1137-20121227|7272_1 276 EKTTMHINTLYDCLNDMCSPPGRNETSPMRLPVSGIYKIKGVGDVLAGRVEQGLVKPNEEVVFMPTNTPANPCGGKVFTIEMhhTRHEVAKPGDnVGLNIKGLDKQNMPRVGDVMIYKKDKSLDQC 401
                 588889999998888888888888888888666555545567779999******************99888776666666663256666677744******************9998888776665 PP

>> TIGR00484  EF-G: translation elongation factor G
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.3   0.0   1.1e-10   5.2e-08      18     146 ..      60     216 ..      57     242 .. 0.66

  Alignments for each domain:
  == domain 1    score: 29.3 bits;  conditional E-value: 1.1e-10
   TIGR00484  18 hidaGktttterilfytgki..hkigevh.....dGaat......mdwmeqekerGititsaattvewkdfrinlidtPGhvdft.........veverslrvldGavavl....davaG.vepqsetvwrqakkyevPrivf.vnkmdkiGanflk 146
                  +d+Gk+ttt r+lf  g i   ++++ +      G++       md  + e+erG+ti+ ++ + + ++++  +i +PGh df           +v   +   dG  +      + +aG v+ q+    r  +  +v +++  vnkmd   a ++ 
  MMETSP1137-20121227|7272_1  60 QVDSGKSTTTGRLLFELGGIpeREMEKLKaeadrLGKSSfafafyMDRQKEERERGVTISCTTKEFFTEKWHYTIIXAPGHRDFIknmisgaaqADVAXLMVPADGNFTTAiqkgNHKAGeVQGQTRQHARLXNLLGVKQLIIgVNKMDTDTAGPYS 216
                 68*************99866222222222222233443222333499999*********99999999999**************7222111111245555555677544321111333334999999999999999998865439999988887765 PP

>> TIGR00503  prfC: peptide chain release factor 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   0.0   1.1e-05    0.0048      21     114 ..      62     164 ..      57     237 .. 0.68

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 1.1e-05
   TIGR00503  21 daGkttltekvllyGnaiqeaG..avkargsqrsaks.....dwm...emekqrGisittsvlqfdyrdklvnlldtpGhedfsedtyrtltavdsalmvidaa 114
                 d+Gk+t t ++l+  + i e     +ka   +r  ks      +m   + e++rG++i+++  +f  +     ++ +pGh+df ++     + +d a +++ a 
  MMETSP1137-20121227|7272_1  62 DSGKSTTTGRLLFELGGIPEREmeKLKAEA-DRLGKSsfafaFYMdrqKEERERGVTISCTTKEFFTEKWHYTIIXAPGHRDFIKNMISGAAQADVAXLMVPAD 164
                 788888888888766666554400444432.2222221111134411156889************999999************************998777553 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (521 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       114  (0.0277913); expected 82.0 (0.02)
Passed bias filter:                      101  (0.0246221); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                         9  (0.00219405); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.59u 0.19s 00:00:00.78 Elapsed: 00:00:00.61
# Mc/sec: 1127.32
//
Query:       MMETSP1137-20121227|7273_1  [L=162]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (162 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        67  (0.0163335); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.15s 00:00:00.31 Elapsed: 00:00:00.32
# Mc/sec: 668.19
//
Query:       MMETSP1137-20121227|7274_1  [L=172]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (172 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       211  (0.0514383); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.18s 00:00:00.42 Elapsed: 00:00:00.30
# Mc/sec: 756.74
//
Query:       MMETSP1137-20121227|7276_1  [L=173]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.13    7.7   3.6       0.14    7.5   2.5    1.0  1  TIGR00927 2A1904: K+-dependent Na+/Ca+ exchanger


Domain annotation for each model (and alignments):
>> TIGR00927  2A1904: K+-dependent Na+/Ca+ exchanger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   2.5   3.4e-05      0.14     790     843 ..     116     167 ..      62     172 .. 0.50

  Alignments for each domain:
  == domain 1    score: 7.5 bits;  conditional E-value: 3.4e-05
   TIGR00927 790 aeeeseGeieaerkgedegegeieakeaevkGeeeeeeveaeeeteaeGdedeg 843
                  e+++eGe ++e++ e+++eg+  +k  +++G + +   e++ ++ +  ++de 
  MMETSP1137-20121227|7276_1 116 KEDDKEGEKRSEKQSEKAKEGKGGGKAEKKDGSNSN--SEDDTSCGDSSTQDEA 167
                 233334444444444444444433333333333211..1222222222223333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (173 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        98  (0.0238908); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.21u 0.17s 00:00:00.38 Elapsed: 00:00:00.26
# Mc/sec: 878.24
//
Query:       MMETSP1137-20121227|7277_1  [L=106]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (106 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       182  (0.0443686); expected 82.0 (0.02)
Passed bias filter:                      118  (0.0287665); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.17s 00:00:00.34 Elapsed: 00:00:00.25
# Mc/sec: 559.63
//
Query:       MMETSP1137-20121227|7278_1  [L=223]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (223 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        53  (0.0129205); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.17s 00:00:00.37 Elapsed: 00:00:00.48
# Mc/sec: 613.20
//
Query:       MMETSP1137-20121227|7279_1  [L=929]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (929 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        47  (0.0114578); expected 82.0 (0.02)
Passed bias filter:                       42  (0.0102389); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.54u 0.17s 00:00:00.71 Elapsed: 00:00:00.55
# Mc/sec: 2229.42
//
Query:       MMETSP1137-20121227|7280_1  [L=98]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (98 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        71  (0.0173086); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.12s 00:00:00.26 Elapsed: 00:00:00.27
# Mc/sec: 479.07
//
Query:       MMETSP1137-20121227|7283_1  [L=264]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (264 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        87  (0.0212092); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.15s 00:00:00.37 Elapsed: 00:00:00.35
# Mc/sec: 995.57
//
Query:       MMETSP1137-20121227|7284_1  [L=92]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.1e-05   23.3   0.7    1.2e-05   23.1   0.5    1.2  1  TIGR03193 4hydroxCoAred: 4-hydroxybenzoyl-CoA reductase, gamma subunit
    0.00067   15.6   1.2    0.00071   15.5   0.8    1.0  1  TIGR03311 Se_dep_Molyb_1: selenium-dependent molybdenum hydroxylase 1
     0.0021   14.7   0.2     0.0023   14.6   0.1    1.1  1  TIGR02160 PA_CoA_Oxy5: phenylacetate-CoA oxygenase/reductase, PaaK subunit
     0.0023   15.3   2.1      0.003   14.9   1.4    1.3  1  TIGR03198 pucE: xanthine dehydrogenase E subunit
  ------ inclusion threshold ------
      0.012   12.9   0.4      0.013   12.7   0.3    1.1  1  TIGR00384 dhsB: succinate dehydrogenase and fumarate reductase iron-sulfur protein
      0.021   12.5   0.8      0.031   11.9   0.5    1.4  1  TIGR02008 fdx_plant: ferredoxin [2Fe-2S]


Domain annotation for each model (and alignments):
>> TIGR03193  4hydroxCoAred: 4-hydroxybenzoyl-CoA reductase, gamma subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.1   0.5   1.7e-08   1.2e-05      26      61 ..      36      71 ..      15      88 .. 0.88

  Alignments for each domain:
  == domain 1    score: 23.1 bits;  conditional E-value: 1.7e-08
   TIGR03193 26 rdvvgltgvkqgcdggecgactvlvdgeprlacltl 61
                 +vvg +g   gc  gecg+c   +dg+ + +c++ 
  MMETSP1137-20121227|7284_1 36 MKVVGSSGLIYGCKTGECGTCEAKLDGRVVRTCVAK 71
                5799*****************************975 PP

>> TIGR03311  Se_dep_Molyb_1: selenium-dependent molybdenum hydroxylase 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.8     1e-06   0.00071      32      62 ..      45      75 ..      30      89 .. 0.86

  Alignments for each domain:
  == domain 1    score: 15.5 bits;  conditional E-value: 1e-06
   TIGR03311 32 knGcaeGacGactvlvnGkavkaclftvekl 62
                  Gc+ G cG+c   ++G+ v++c++++ k 
  MMETSP1137-20121227|7284_1 45 IYGCKTGECGTCEAKLDGRVVRTCVAKLPKK 75
                57***********************998775 PP

>> TIGR02160  PA_CoA_Oxy5: phenylacetate-CoA oxygenase/reductase, PaaK subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.1   3.4e-06    0.0023     270     316 ..      22      63 ..       5      74 .. 0.70

  Alignments for each domain:
  == domain 1    score: 14.6 bits;  conditional E-value: 3.4e-06
   TIGR02160 270 dGlsreislsaedesvldaalraradlPfackgGvcgtcrakvleGk 316
                 dG +  +++ ++ +s++ +     + l + ck+G cgtc ak+ +G+
  MMETSP1137-20121227|7284_1  22 DGIK--TVQGTAGQSMMKVVGS--SGLIYGCKTGECGTCEAKL-DGR 63 
                 6655..4445556677666544..4589*************96.555 PP

>> TIGR03198  pucE: xanthine dehydrogenase E subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   1.4   4.4e-06     0.003      34      62 ..      42      70 ..      26      85 .. 0.86

  Alignments for each domain:
  == domain 1    score: 14.9 bits;  conditional E-value: 4.4e-06
   TIGR03198 34 tgtkvscgigrcgacavlvdgkvanacll 62
                +g    c+ g cg+c   +dg+v+ +c+ 
  MMETSP1137-20121227|7284_1 42 SGLIYGCKTGECGTCEAKLDGRVVRTCVA 70
                566778*********************85 PP

>> TIGR00384  dhsB: succinate dehydrogenase and fumarate reductase iron-sulfur protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.3     2e-05     0.013      48      84 ..      47      82 ..      33      90 .. 0.84

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 2e-05
   TIGR00384 48 sCReaiCGscavkvngkpkLACktkvedleqllklii 84
                 C+++ CG c  k++g+ +  C +k+ ++  ++k+ +
  MMETSP1137-20121227|7284_1 47 GCKTGECGTCEAKLDGRVVRTCVAKLPKKP-QVKIDV 82
                6************************99854.466444 PP

>> TIGR02008  fdx_plant: ferredoxin [2Fe-2S]
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.5   4.5e-05     0.031      14      54 ..      24      62 ..      13      77 .. 0.73

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 4.5e-05
   TIGR02008 14 eetievpddeyildaaeeeGidlpyscraGacstcaGkvke 54
                 +t++    + ++ +   +G  l y c++G c tc  k+  
  MMETSP1137-20121227|7284_1 24 IKTVQGTAGQSMMKVVGSSG--LIYGCKTGECGTCEAKLDG 62
                55666666666666666666..68***********999864 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (92 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       103  (0.0251097); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                        19  (0.00463189); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.15u 0.16s 00:00:00.31 Elapsed: 00:00:00.27
# Mc/sec: 449.74
//
Query:       MMETSP1137-20121227|7285_1  [L=162]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (162 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        82  (0.0199902); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.15s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 737.32
//
Query:       MMETSP1137-20121227|7286_1  [L=761]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (761 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        87  (0.0212092); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.49u 0.16s 00:00:00.65 Elapsed: 00:00:00.44
# Mc/sec: 2282.81
//
Query:       MMETSP1137-20121227|7287_1  [L=752]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (752 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       149  (0.0363237); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.47u 0.15s 00:00:00.62 Elapsed: 00:00:00.46
# Mc/sec: 2157.73
//
Query:       MMETSP1137-20121227|7289_1  [L=154]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (154 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.16s 00:00:00.33 Elapsed: 00:00:00.30
# Mc/sec: 677.54
//
Query:       MMETSP1137-20121227|7290_1  [L=187]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (187 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        41  (0.00999512); expected 82.0 (0.02)
Passed bias filter:                       32  (0.00780107); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.11s 00:00:00.30 Elapsed: 00:00:00.36
# Mc/sec: 685.61
//
Query:       MMETSP1137-20121227|7292_1  [L=245]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (245 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       214  (0.0521697); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.15s 00:00:00.38 Elapsed: 00:00:00.35
# Mc/sec: 923.92
//
Query:       MMETSP1137-20121227|7293_1  [L=64]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       312  (0.0760605); expected 82.0 (0.02)
Passed bias filter:                      175  (0.0426621); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.28
# Mc/sec: 301.69
//
Query:       MMETSP1137-20121227|7294_1  [L=68]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.5e-09   35.8   1.0    1.8e-09   35.5   0.7    1.1  1  TIGR00003 TIGR00003: copper ion binding protein
      2e-09   35.7   0.9    2.2e-09   35.6   0.7    1.0  1  TIGR02052 MerP: mercuric transport protein periplasmic component
  ------ inclusion threshold ------
       0.16    9.8   2.1       0.37    8.7   0.8    2.1  2  TIGR03980 prismane_assoc: hybrid cluster protein-associated redox disulfide domain


Domain annotation for each model (and alignments):
>> TIGR00003  TIGR00003: copper ion binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.5   0.7   1.3e-12   1.8e-09       4      66 .]       6      67 ..       4      67 .. 0.88

  Alignments for each domain:
  == domain 1    score: 35.5 bits;  conditional E-value: 1.3e-12
   TIGR00003  4 lqVkgmsCnHCVdkiEkfVGeleGVsavkvdle.kekvvVeFdapkvsaeeIkeAildaGyeve 66
                l V gmsC  C   +E+ V ++ GV  vk++ +  +kv V  +       +IkeAi+ aG++ve
  MMETSP1137-20121227|7294_1  6 LTVTGMSCGGCSGSVENVVKKVPGVAEVKAEFQpTNKVTVTGED--YDTMAIKEAIEKAGFKVE 67
                78******************************835678887554..4899**********9985 PP

>> TIGR02052  MerP: mercuric transport protein periplasmic component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.6   0.7   1.6e-12   2.2e-09      24      86 ..       3      64 ..       1      67 [. 0.88

  Alignments for each domain:
  == domain 1    score: 35.6 bits;  conditional E-value: 1.6e-12
   TIGR02052 24 tvtlevPgmtcaacPitvktalkkvdGvekaevsfk.qklavvtfddektnvkaltkatkdaGy 86
                t+ l+v gm+c+ c  +v++ +kkv+Gv  ++ +f+ +++++vt +d  t   a+ +a ++aG+
  MMETSP1137-20121227|7294_1  3 TLVLTVTGMSCGGCSGSVENVVKKVPGVAEVKAEFQpTNKVTVTGEDYDT--MAIKEAIEKAGF 64
                7899*************************999999746678899988877..689999999998 PP

>> TIGR03980  prismane_assoc: hybrid cluster protein-associated redox disulfide domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   0.8   0.00027      0.37      20      34 ..       5      19 ..       3      36 .. 0.87
   2 ?   -1.1   0.0      0.32   4.3e+02       4      13 ..      52      61 ..      50      64 .. 0.67

  Alignments for each domain:
  == domain 1    score: 8.7 bits;  conditional E-value: 0.00027
   TIGR03980 20 vlmeygmhCvGCpia 34
                vl+  gm C GC+ +
  MMETSP1137-20121227|7294_1  5 VLTVTGMSCGGCSGS 19
                78899*******987 PP

  == domain 2    score: -1.1 bits;  conditional E-value: 0.32
   TIGR03980  4 dmtigeilrk 13
                +m i+e ++k
  MMETSP1137-20121227|7294_1 52 TMAIKEAIEK 61
                5777777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (68 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       178  (0.0433935); expected 82.0 (0.02)
Passed bias filter:                      151  (0.0368113); expected 82.0 (0.02)
Passed Vit filter:                        20  (0.00487567); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.14u 0.19s 00:00:00.33 Elapsed: 00:00:00.48
# Mc/sec: 186.98
//
Query:       MMETSP1137-20121227|7295_1  [L=602]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (602 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        96  (0.0234032); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.14s 00:00:00.51 Elapsed: 00:00:00.51
# Mc/sec: 1557.99
//
Query:       MMETSP1137-20121227|7296_1  [L=617]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (617 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        66  (0.0160897); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.15s 00:00:00.53 Elapsed: 00:00:01.01
# Mc/sec: 806.31
//
Query:       MMETSP1137-20121227|7297_1  [L=129]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (129 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        39  (0.00950756); expected 82.0 (0.02)
Passed bias filter:                       34  (0.00828864); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.13s 00:00:00.27 Elapsed: 00:00:00.28
# Mc/sec: 608.09
//
Query:       MMETSP1137-20121227|7298_1  [L=779]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (779 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       139  (0.0338859); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.48u 0.13s 00:00:00.61 Elapsed: 00:00:01.23
# Mc/sec: 835.93
//
Query:       MMETSP1137-20121227|7299_1  [L=548]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (548 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       104  (0.0253535); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.15s 00:00:00.53 Elapsed: 00:00:01.06
# Mc/sec: 682.36
//
Query:       MMETSP1137-20121227|7300_1  [L=404]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (404 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        81  (0.0197465); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.17s 00:00:00.49 Elapsed: 00:00:00.53
# Mc/sec: 1006.11
//
Query:       MMETSP1137-20121227|7301_1  [L=234]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (234 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       193  (0.0470502); expected 82.0 (0.02)
Passed bias filter:                      107  (0.0260848); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.15s 00:00:00.37 Elapsed: 00:00:00.41
# Mc/sec: 753.30
//
Query:       MMETSP1137-20121227|7302_1  [L=142]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (142 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        53  (0.0129205); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.16s 00:00:00.33 Elapsed: 00:00:00.33
# Mc/sec: 567.95
//
Query:       MMETSP1137-20121227|7303_1  [L=497]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (497 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        67  (0.0163335); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.17s 00:00:00.50 Elapsed: 00:00:00.48
# Mc/sec: 1366.64
//
Query:       MMETSP1137-20121227|7304_1  [L=493]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.9e-09   33.3   6.6     0.0011   15.3   0.4    3.0  3  TIGR03591 polynuc_phos: polyribonucleotide nucleotidyltransferase
    6.2e-05   21.2   4.4      0.042   12.0   0.1    3.1  3  TIGR01952 nusA_arch: NusA family KH domain protein, archaeal
    6.5e-05   20.6  10.3      0.076   10.6   0.1    3.2  3  TIGR03665 arCOG04150: arCOG04150 universal archaeal KH domain protein
    0.00018   18.4   0.3     0.0034   14.3   0.0    2.3  2  TIGR01953 NusA: transcription termination factor NusA
     0.0025   14.1   4.5      0.074    9.2   0.1    2.7  3  TIGR02696 pppGpp_PNP: guanosine pentaphosphate synthetase I/polyribonucleotide nucleotidyltransferase
  ------ inclusion threshold ------
      0.011   12.1   5.7       0.14    8.4   0.3    2.9  3  TIGR03319 YmdA_YtgF: conserved hypothetical protein YmdA/YtgF


Domain annotation for each model (and alignments):
>> TIGR03591  polynuc_phos: polyribonucleotide nucleotidyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.4   1.5e-06    0.0011     553     589 ..      29      65 ..      19      99 .. 0.81
   2 !   13.4   0.2   5.9e-06     0.004     554     589 ..     125     160 ..     113     186 .. 0.88
   3 !    6.7   0.0   0.00064      0.44     545     589 ..     271     315 ..     267     356 .. 0.75

  Alignments for each domain:
  == domain 1    score: 15.3 bits;  conditional E-value: 1.5e-06
   TIGR03591 553 etikinkdkireviGkgGkvireiieetgakidiedd 589
                   + i++ +++++iGkgG++i+ i e +g+k++i d 
  MMETSP1137-20121227|7304_1  29 LRLMIPNTQVGTIIGKGGANIKGIRELSGCKMQIADM 65 
                 567899****************************996 PP

  == domain 2    score: 13.4 bits;  conditional E-value: 5.9e-06
   TIGR03591 554 tikinkdkireviGkgGkvireiieetgakidiedd 589
                 ++ +n+++++ +iGkgG++i+++ ee+ga i++e +
  MMETSP1137-20121227|7304_1 125 KLVLNNNQVGGIIGKGGSMIKQMREESGAFIKVEAT 160
                 567899**************************9865 PP

  == domain 3    score: 6.7 bits;  conditional E-value: 0.00064
   TIGR03591 545 lseyaPrietikinkdkireviGkgGkvireiieetgakidiedd 589
                 ls  a  +++  ++   ++++iG+gG+ i+e+ e + a i+++ +
  MMETSP1137-20121227|7304_1 271 LSYAASGTMEQLVPVGLVGRIIGRGGSGIKEMRELSHAMIKVNAE 315
                 55666666777789999***********************99865 PP

>> TIGR01952  nusA_arch: NusA family KH domain protein, archaeal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.0   0.1   6.2e-05     0.042      97     140 ..      24      67 ..      16      68 .. 0.84
   2 !    7.1   0.1    0.0021       1.4      37      72 ..     126     160 ..     118     180 .. 0.83
   3 ?    2.2   0.0     0.066        45     112     132 ..     289     309 ..     281     316 .. 0.72

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 6.2e-05
   TIGR01952  97 nskkvayvevepedkgvaiGkdGknierakelaeRhldiddvkv 140
                 +++ v  + + +++ g +iGk+G ni+ ++el   +++i d+++
  MMETSP1137-20121227|7304_1  24 EETMVLRLMIPNTQVGTIIGKGGANIKGIRELSGCKMQIADMVI 67 
                 566677778888999999********999999999999999876 PP

  == domain 2    score: 7.1 bits;  conditional E-value: 0.0021
   TIGR01952  37 fvvkkgemgvAiGkgGanvkkveellgkkvelvees 72 
                 +v++++++g  iGkgG+ +k+++e  g  +++ e +
  MMETSP1137-20121227|7304_1 126 LVLNNNQVGGIIGKGGSMIKQMREESGAFIKV-EAT 160
                 79999******************998887764.444 PP

  == domain 3    score: 2.2 bits;  conditional E-value: 0.066
   TIGR01952 112 gvaiGkdGknierakelaeRh 132
                 g++iG++G  i++ +el +  
  MMETSP1137-20121227|7304_1 289 GRIIGRGGSGIKEMRELSHAM 309
                 678888888888888876554 PP

>> TIGR03665  arCOG04150: arCOG04150 universal archaeal KH domain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.4   0.6   0.00027      0.18     101     133 ..      39      68 ..      31      93 .. 0.67
   2 !    5.8   0.2    0.0034       2.3       8     126 ..     132     159 ..     125     187 .. 0.62
   3 !   10.6   0.1   0.00011     0.076     101     146 ..     289     342 ..     283     352 .. 0.80

  Alignments for each domain:
  == domain 1    score: 9.4 bits;  conditional E-value: 0.00027
   TIGR03665 101 griIGeeGktrkiieeltgvkisvygktvsiiG 133
                 g iIG++G   k i+el+g k+ + +  +   G
  MMETSP1137-20121227|7304_1  39 GTIIGKGGANIKGIRELSGCKMQIADMVI---G 68 
                 77888888888888888888888877433...3 PP

  == domain 2    score: 5.8 bits;  conditional E-value: 0.0034
   TIGR03665   8 rigvliGkkgevkkeieektkvkleidseegevkveeeeedplkvlkarevvkAigrGfspekAlkLldddkvLevidlkelaksknelkrikgriIGeeGktrkiieeltgvkisvyg 126
                 ++g                                                                                            iIG++G + k+++e +g+ i v+ 
  MMETSP1137-20121227|7304_1 132 QVG-------------------------------------------------------------------------------------------GIIGKGGSMIKQMREESGAFIKVEA 159
                 444...........................................................................................4556666665555555555555544 PP

  == domain 3    score: 10.6 bits;  conditional E-value: 0.00011
   TIGR03665 101 griIGeeGktrkiieeltgvkisvyg........ktvsiiGeieqvkiareAie 146
                 griIG++G   k ++el+ + i v+         ++v + G++eq ++a + i+
  MMETSP1137-20121227|7304_1 289 GRIIGRGGSGIKEMRELSHAMIKVNAecepgtdqRKVVVTGTPEQTAMALQLIN 342
                 9**********************9753334444478999999999998877775 PP

>> TIGR01953  NusA: transcription termination factor NusA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.0   4.9e-06    0.0034     296     336 ..      23      63 ..      15      66 .. 0.90
   2 ?    1.7   0.0     0.032        22     299     323 ..     121     145 ..     107     160 .. 0.79

  Alignments for each domain:
  == domain 1    score: 14.3 bits;  conditional E-value: 4.9e-06
   TIGR01953 296 dedkksaevvveeeqlslaiGkeGqNvrLaskLtgwkidvk 336
                 +e++   + +++++q+ + iGk+G+N++ + +L+g k+ + 
  MMETSP1137-20121227|7304_1  23 QEETMVLRLMIPNTQVGTIIGKGGANIKGIRELSGCKMQIA 63 
                 677889999**************************999886 PP

  == domain 2    score: 1.7 bits;  conditional E-value: 0.032
   TIGR01953 299 kksaevvveeeqlslaiGkeGqNvr 323
                 +++ + v++++q+   iGk+G+ ++
  MMETSP1137-20121227|7304_1 121 SHTLKLVLNNNQVGGIIGKGGSMIK 145
                 4788899999999999999998766 PP

>> TIGR02696  pppGpp_PNP: guanosine pentaphosphate synthetase I/polyribonucleotide nucleotidyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.3   0.2    0.0016       1.1     574     616 ..      22      64 ..      12      90 .. 0.87
   2 !    9.2   0.1   0.00011     0.074     585     630 ..     128     176 ..     109     202 .. 0.76
   3 ?   -0.8   0.0      0.11        79     574     616 ..     272     314 ..     268     339 .. 0.85

  Alignments for each domain:
  == domain 1    score: 5.3 bits;  conditional E-value: 0.0016
   TIGR02696 574 setaprviavkipvdkigevigpkgkvinsiqdetgaeisied 616
                 +++   v+++ ip  ++g +ig  g  i  i++ +g ++ i d
  MMETSP1137-20121227|7304_1  22 AQEETMVLRLMIPNTQVGTIIGKGGANIKGIRELSGCKMQIAD 64 
                 566678999*****************************99987 PP

  == domain 2    score: 9.2 bits;  conditional E-value: 0.00011
   TIGR02696 585 ipvdkigevigpkgkvinsiqdetgaeisieddgtv...yigaadgdsa 630
                 +  +++g +ig  g +i ++++e+ga i +e   t     ig+++g ++
  MMETSP1137-20121227|7304_1 128 LNNNQVGGIIGKGGSMIKQMREESGAFIKVEATPTAedeRIGSVQGVKS 176
                 45579*************************9887753334677766555 PP

  == domain 3    score: -0.8 bits;  conditional E-value: 0.11
   TIGR02696 574 setaprviavkipvdkigevigpkgkvinsiqdetgaeisied 616
                 s  a   +   +pv  +g +ig  g  i ++++ + a i ++ 
  MMETSP1137-20121227|7304_1 272 SYAASGTMEQLVPVGLVGRIIGRGGSGIKEMRELSHAMIKVNA 314
                 555666667779******************9999999888764 PP

>> TIGR03319  YmdA_YtgF: conserved hypothetical protein YmdA/YtgF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   0.3    0.0002      0.14     202     242 ..      25      64 ..      15      78 .. 0.78
   2 ?    3.7   0.0    0.0055       3.8     196     246 ..     114     163 ..     107     164 .. 0.78
   3 ?    1.0   0.1     0.038        26     215     232 ..     287     304 ..     278     312 .. 0.86

  Alignments for each domain:
  == domain 1    score: 8.4 bits;  conditional E-value: 0.0002
   TIGR03319 202 estvsvvslpndemkGRiiGreGRniralEtltGvdliiDd 242
                 e+ v  + +pn ++ G iiG+ G ni+ + +l G  + i d
  MMETSP1137-20121227|7304_1  25 ETMVLRLMIPNTQV-GTIIGKGGANIKGIRELSGCKMQIAD 64 
                 44566677888775.9******************9887765 PP

  == domain 2    score: 3.7 bits;  conditional E-value: 0.0055
   TIGR03319 196 aadvvaestvsvvslpndemkGRiiGreGRniralEtltGvdliiDdtPea 246
                 a++ +++s +  + l+n+++ G iiG+ G  i+ + +  G  + ++ tP a
  MMETSP1137-20121227|7304_1 114 ASEGTGQSHTLKLVLNNNQV-GGIIGKGGSMIKQMREESGAFIKVEATPTA 163
                 55555555555566666665.77********************9**99986 PP

  == domain 3    score: 1.0 bits;  conditional E-value: 0.038
   TIGR03319 215 mkGRiiGreGRniralEt 232
                 + GRiiGr G  i+ + +
  MMETSP1137-20121227|7304_1 287 LVGRIIGRGGSGIKEMRE 304
                 56**********998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (493 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        89  (0.0216967); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.39u 0.15s 00:00:00.54 Elapsed: 00:00:00.60
# Mc/sec: 1084.51
//
Query:       MMETSP1137-20121227|7305_1  [L=275]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.3e-08   29.9   0.1    2.3e-07   28.6   0.0    1.6  2  TIGR01627 A_thal_3515: uncharacterized plant-specific domain TIGR01627


Domain annotation for each model (and alignments):
>> TIGR01627  A_thal_3515: uncharacterized plant-specific domain TIGR01627
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0      0.16   6.7e+02      94     117 ..      78     101 ..      68     111 .. 0.75
   2 !   28.6   0.0   5.5e-11   2.3e-07      10      77 ..     116     184 ..     107     206 .. 0.84

  Alignments for each domain:
  == domain 1    score: -2.4 bits;  conditional E-value: 0.16
   TIGR01627  94 kvkeadelleaareaeecrpvsdn 117
                 +  +a ++l +  e+++c++  + 
  MMETSP1137-20121227|7305_1  78 ECTDATRILALNEEQQNCATAANT 101
                 667888888888888888877754 PP

  == domain 2    score: 28.6 bits;  conditional E-value: 5.5e-11
   TIGR01627  10 allhyaasndstalsfdelkvlsdvldrksPcnllvfGlaheslllk.slnhrGrtvfieeekiyiakv 77 
                  l++++ + +  + ++d   v++    r     +lvfG + +s++++  +n++G tvf+e++k ++a  
  MMETSP1137-20121227|7305_1 116 VLQQLVLQTKGQETTYDRTLVMRALAIREHKARMLVFGCGRDSVFWAkHMNRHGETVFLEDNKEWAALN 184
                 5778888888889999999999999999999***************6379***************9975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (275 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       145  (0.0353486); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.24u 0.17s 00:00:00.41 Elapsed: 00:00:00.38
# Mc/sec: 955.18
//
Query:       MMETSP1137-20121227|7306_1  [L=217]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (217 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        53  (0.0129205); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.16s 00:00:00.36 Elapsed: 00:00:00.57
# Mc/sec: 493.82
//
Query:       MMETSP1137-20121227|7308_1  [L=298]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (298 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       379  (0.092394); expected 82.0 (0.02)
Passed bias filter:                      164  (0.0399805); expected 82.0 (0.02)
Passed Vit filter:                        24  (0.0058508); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.18s 00:00:00.50 Elapsed: 00:00:00.54
# Mc/sec: 728.38
//
Query:       MMETSP1137-20121227|7309_1  [L=648]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (648 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       350  (0.0853242); expected 82.0 (0.02)
Passed bias filter:                      122  (0.0297416); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.19s 00:00:00.65 Elapsed: 00:00:00.68
# Mc/sec: 1257.78
//
Query:       MMETSP1137-20121227|7310_1  [L=256]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00014   19.2   0.0    0.00028   18.2   0.0    1.4  1  TIGR00065 ftsZ: cell division protein FtsZ


Domain annotation for each model (and alignments):
>> TIGR00065  ftsZ: cell division protein FtsZ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.0   6.8e-08   0.00028      83     216 ..     108     250 ..      93     253 .. 0.83

  Alignments for each domain:
  == domain 1    score: 18.2 bits;  conditional E-value: 6.8e-08
   TIGR00065  83 iGrkaAeeskdeikkllegadlv...fitaGlGgGTGTGa.aPvvakiakel...giLtvavvtkPfkfEgkkrrkkAeeGleeLkkavDslivipNdkllevvpk..lplkeafkvadevlvkavkgiselItkpglinvDF 216
                  G+++ +   d ++k+ eg d      ++  lGgGTG G  +  ++ki +e     + t +v   P   +      +    +++L + +D  ++i+N+ l +++ +  + ++  f   +++++  ++  +  +  pg++n D 
  MMETSP1137-20121227|7310_1 108 EGAELIDAVLDVVRKEAEGCDCLqgfTLSHSLGGGTGSGMgTLLISKIREEYpdrVMCTFSVFPSPKVSDTVVEPYNCVLSVHQLVENSDESLLIDNEALYDICFRtlKLTTPTFGDLNHLVAAVMSATTCCLRFPGQLNCDL 250
                 4667777888999999999998544358899********636789***997532257899*******************************************98875567789****99888777777888999***99995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (256 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        74  (0.01804); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.25u 0.16s 00:00:00.41 Elapsed: 00:00:00.62
# Mc/sec: 544.99
//
Query:       MMETSP1137-20121227|7311_1  [L=208]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.012   13.0   0.0       0.02   12.3   0.0    1.4  1  TIGR00633 xth: exodeoxyribonuclease III (xth)


Domain annotation for each model (and alignments):
>> TIGR00633  xth: exodeoxyribonuclease III (xth)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   4.8e-06      0.02      25     108 ..     113     207 ..     101     208 .] 0.61

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 4.8e-06
   TIGR00633  25 eekpDvlclQEtKvaeeqlpkell.....eeegYevafssakkk.gysGvallskeepe...svrvgigaeeedeegr..vitaefdeltvvnvY 108
                   k Dv++lQE  v++++++  +      +  gY+ ++  ++   +  G+a+l   +     +v + + ++++ +  r  + +  f++l ++++Y
  MMETSP1137-20121227|7311_1 113 DDKIDVIALQELNVHRNNQSVLEShkrtaNSLGYKLFIAPTSAVaQIGGTAILISLKMIadgNVATFLHSHPNGNYVRikITNPVFGNLCIWSIY 207
                 5789***********96654333333455889***999987755599999998653332111333333333333333343444556666666666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (208 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       147  (0.0358362); expected 82.0 (0.02)
Passed bias filter:                      106  (0.0258411); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.23u 0.16s 00:00:00.39 Elapsed: 00:00:00.31
# Mc/sec: 885.60
//
Query:       MMETSP1137-20121227|7312_1  [L=669]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   9.2e-228  755.2   5.4   1.1e-227  755.0   3.7    1.0  1  TIGR02350 prok_dnaK: chaperone protein DnaK
   5.8e-169  561.2   2.2     7e-169  560.9   1.5    1.0  1  TIGR01991 HscA: Fe-S protein assembly chaperone HscA
    9.1e-13   45.8   0.3    6.1e-12   43.1   0.0    2.0  2  TIGR00904 mreB: cell shape determining protein, MreB/Mrl family
    3.8e-11   40.7   0.2    2.2e-09   35.0   0.1    2.5  3  TIGR02529 EutJ: ethanolamine utilization protein EutJ family protein
    1.3e-05   21.7   0.0    5.6e-05   19.7   0.0    1.9  2  TIGR01312 XylB: xylulokinase
    0.00013   19.0   3.9      0.017   12.0   0.0    2.7  4  TIGR01174 ftsA: cell division protein FtsA


Domain annotation for each model (and alignments):
>> TIGR02350  prok_dnaK: chaperone protein DnaK
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  755.0   3.7  1.6e-230  1.1e-227       2     595 ..      26     632 ..      25     633 .. 0.94

  Alignments for each domain:
  == domain 1    score: 755.0 bits;  conditional E-value: 1.6e-230
   TIGR02350   2 iiGidLGttnsvvavleggepvvianaeGarttPsvvafkkdgerlvGelakrqavtnpentivsikrliGrkle..eveeeakkvpykvveaen...e..vkvevedkeytpeeisaeiLqklkkdaeaylGekvteavitvPayfndaqrqatkdaGkiaGlevlriinePtaaaLayGldke.kkdekilvfdlGGGtfdvsilelgdgvfevkstaGdtkLGGddfdekiidylaeefkkeegidLskdkmalqrlkeaaekakieLssaleteinlpfitadasgpkhlelkltrakfeelvedlvertkepvkkalkdaklsaseidevilvGGstriPavqelvkelvg.kepnksvnPdevvaiGaaiqggvlkge....vkdvlLldvtPLsLgietlGgvltkliernttiPtkksqvfstaednqpaveihvlqGerelaadnkslgrfeLtgippaPrGvpqievtfdidanGilsvsakdkatgkeqsitita.ssglseeeiermvkeaeanaeedkkkkeevearneadsliyqaektlke..agdkleeeekekiekaveelkealkeedveek..ikakteelekaleklaealy 595
                 +iGidLGtt s+va+++ ++ ++ian +G+rttPs+vaf+++ er++G++ak+qa +np nt++ +krliGr+++   +++++k+ p+kv+++        v+ + e ke+ peeis+++L+k+k+ ae ylG +v++av+tvPayf daqr +tkdaG+iaGl+vlriinePtaaa+ayGldk+ + ++++l+fdlGGGtfdvs+l +++g+fevk+taGdt+LGG+dfd+++++++++efk+++  d++ +  +++rl+ a e+ak  Lss+++t+i++  +       +++  ++tra+feel++dl+++t+epv+k+l+dak+s+s i++v+lvGGstriP+vq l+ ++++ kep++s+nPde+va Gaa+q+++l+g      +d+lLldvtPLsLg+et G v+t li rntt+Ptkks +fst +dnqpav+i+v  Ger  ++dn++lg+f+L+gipp+PrGvpqi+vtfdidanG+l+vsa +k+t+ke++itit+ +s ls++++e+m+ +ae++a+ed + ke+ve +n ++++ y++++tl +   +dk+++++k+k+e+a+ee+ + l++++++ek   ++k +e+e +++ +++a+y
  MMETSP1137-20121227|7312_1  26 AIGIDLGTTYSCVAIWQNDRVEIIANDQGNRTTPSYVAFTDS-ERMIGDAAKNQAAMNPTNTVFDAKRLIGRRFSesSTQSDIKHFPFKVIAKXGdrpCivVEYKGESKEFFPEEISSMVLTKMKEVAESYLGTNVDNAVVTVPAYFXDAQRASTKDAGSIAGLNVLRIINEPTAAAIAYGLDKSsNAERNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDITGNARSMRRLRTACERAKRTLSSSTQTSIEIDSLFE----GIDFFSSITRARFEELCMDLFRNTMEPVEKVLRDAKMSKSAIHDVVLVGGSTRIPKVQSLLSDFFNgKEPSRSINPDEAVAYGAAVQAAILAGTgsakTSDLLLLDVTPLSLGLETAGEVMTVLIPRNTTVPTKKSXTFSTYSDNQPAVTIQVXEGERTRTKDNNKLGEFNLSGIPPMPRGVPQIDVTFDIDANGMLNVSAVEKSTNKENKITITNdKSRLSKADVEKMTADAEKYAKEDAEFKEKVESKNALENYCYSMKSTLGDdkVKDKIPADDKAKAEAAIEEALKWLEGNQLAEKeeFEHKRKEVEGVCTPIMTAMY 632
                 59***************************************9.******************************9944578899*******9887633322133455689***************************************************************************8356779*****************************************************************************************987754....4678899********************************************************9966************************997666689******************************************************************************************************************963799********************************************87225799**********************9987755688999999999988888887 PP

>> TIGR01991  HscA: Fe-S protein assembly chaperone HscA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  560.9   1.5    1e-171    7e-169       1     567 [.      26     611 ..      26     631 .. 0.90

  Alignments for each domain:
  == domain 1    score: 560.9 bits;  conditional E-value: 1e-171
   TIGR01991   1 avGiDlGttnslvaavregkaevlkdeegrvllpsvvryleegkvevGkeakeaaaedpkntiisvkRlmGrsled..vkkeaeelpyeledakge....mvrlktaqgevtPvevsaeiLkklkkraeealgkelkgavitvPAYFddaqrqatkdAarlaglnvlRLlnePtaAAvAYGldk..aseglyavYDLGGGtFDvsiLklekGvFevlatgGdsaLGGDDfDralaklil...kkagle.aelskeekkellkaaraakeaLtdaeevevevkl..egkdlkaklsreeleelieelvkktleivrralrdaglkveeikevvlvGGstrvplvrqavaelFk.kepltdldPdevvAlGAalqadlLaknkrke..dllLlDviPLsLGletmGGlvekiipRnttiPvakaqeFttykDgqtalaihvvqGeRelvedcrsLarFeLrgippmaAGaarirvtfqvDadGllsvsaqekltgveakievkp.sygLsdeeiekmlkdslknaeeDmeaRalaekkveaerilealekalkad..kdLlseeelkaikaaleklekaleeddaeaik 567
                 a+GiDlGtt+s va  +++++e++ +++g+ + ps v +++  +  +G++ak++aa +p+nt+  +kRl+Gr  ++   ++  ++ p+++ ++ g+    +v+ k +++e  P e+s+ +L k+k+ ae+ lg+++++av+tvPAYF daqr +tkdA+ +aglnvlR++nePtaAA+AYGldk  ++e+ ++++DLGGGtFDvs+L +e+G+Fev+at+Gd++LGG+DfD++++++++   k+++ +  + ++ +++ l +a ++ak++L++++++++e+    eg d+  +++r+++eel  +l + t+e+v+++lrda+++++ i++vvlvGGstr+p+v++ ++++F+ kep  +++Pde vA GAa+qa +La+  + +  dllLlDv+PLsLGlet G ++  +ipRntt+P++k+  F ty D+q a++i+v  GeR   +d+  L+ F+L+gippm+ G+ +i vtf++Da+G+l+vsa ek+t++e+ki++ +    Ls+ ++ekm +d+ k+a+eD+e++ + e+k   e+   +++++l +d  kd + ++++++ +aa+e++ k le+++ ++ +
  MMETSP1137-20121227|7312_1  26 AIGIDLGTTYSCVAIWQNDRVEIIANDQGNRTTPSYVAFTDS-ERMIGDAAKNQAAMNPTNTVFDAKRLIGRRFSEssTQSDIKHFPFKVIAKXGDrpciVVEYKGESKEFFPEEISSMVLTKMKEVAESYLGTNVDNAVVTVPAYFXDAQRASTKDAGSIAGLNVLRIINEPTAAAIAYGLDKssNAERNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVqefKRKNKKdITGNARSMRRLRTACERAKRTLSSSTQTSIEIDSlfEGIDFFSSITRARFEELCMDLFRNTMEPVEKVLRDAKMSKSAIHDVVLVGGSTRIPKVQSLLSDFFNgKEPSRSINPDEAVAYGAAVQAAILAGTGSAKtsDLLLLDVTPLSLGLETAGEVMTVLIPRNTTVPTKKSXTFSTYSDNQPAVTIQVXEGERTRTKDNNKLGEFNLSGIPPMPRGVPQIDVTFDIDANGMLNVSAVEKSTNKENKITITNdKSRLSKADVEKMTADAEKYAKEDAEFKEKVESKNALENYCYSMKSTLGDDkvKDKIPADDKAKAEAAIEEALKWLEGNQLAEKE 611
                 79**************************************99.999**************************6655115666677888886666651211333444455889************************************************************************888899***********************************************99555333333256677888889999999******99988888764469*****************************************************************6489**********************9765544359*****************************************************************************************************************872578********************************************88733589************99999999888766543 PP

>> TIGR00904  mreB: cell shape determining protein, MreB/Mrl family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.0     0.085        58       5      67 ..      27      83 ..      24      92 .. 0.70
   2 !   43.1   0.0     9e-15   6.1e-12     100     303 ..     162     374 ..     138     401 .. 0.77

  Alignments for each domain:
  == domain 1    score: 0.4 bits;  conditional E-value: 0.085
   TIGR00904  5 lgidlGtantlvyvkgkGivlsePsvvavekdkdakaksvlavGkeakemlgktPenikairP 67
                +gidlGt+   v + ++  v     ++a ++++  ++ s +a+ +++ +m+g + +n +a+ P
  MMETSP1137-20121227|7312_1 27 IGIDLGTTYSCVAIWQNDRV----EIIANDQGN-RTTPSYVAF-TDSERMIGDAAKNQAAMNP 83
                89*****9998877666443....567776664.444555555.5677888888888888777 PP

  == domain 2    score: 43.1 bits;  conditional E-value: 9e-15
   TIGR00904 100 kvlicvPsgiteverravkesaksaGarevylieeplaaaiGadlPveept..gsmvvdiGGGttevavisl.gGivvsks....irvaGdeldeaiikyi.....rrkynlliGer.taekikieiGsayaeendeeeklevkGrdlvtGlprtleldskevlealkepvseiveavkstlektpPelaadiverGivltGGGallknldkllske 303
                 + +++vP+   + +r + k++ + aG +   +i+ep aaai  +l  +  +    ++ d+GGGt +v+++++ +Gi   k+      ++G+++d+ ++++      r++ + + G++    ++++    a+ +  +++++  ++   l +G+    +++  +  e   +  ++ +e v+++l +++   +a i  + +vl GG + +  ++ lls+ 
  MMETSP1137-20121227|7312_1 162 NAVVTVPAYFXDAQRASTKDAGSIAGLNVLRIINEPTAAAIAYGLDKSSNAerNVLIFDLGGGTFDVSLLTIeEGIFEVKAtagdTHLGGEDFDNRMVNHFvqefkRKNKKDITGNArSMRRLRTACERAKRTL-SSSTQTSIEIDSLFEGIDFFSSITRARFEELCMDLFRNTMEPVEKVLRDAKMSKSA-I--HDVVLVGGSTRIPKVQSLLSDF 374
                 379**************************************99998765441156899************994599776662233689********99976233324555668887514567888887777764.5677777888899***********************************99877665.4..5699*****9999999999975 PP

>> TIGR02529  EutJ: ethanolamine utilization protein EutJ family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.0       2.1   1.4e+03       1      19 [.      28      46 ..      28      51 .. 0.79
   2 !   35.0   0.1   3.2e-12   2.2e-09      43     144 ..     142     250 ..     126     280 .. 0.84
   3 ?    2.9   0.0      0.02        14     188     218 ..     345     375 ..     322     390 .. 0.79

  Alignments for each domain:
  == domain 1    score: -3.7 bits;  conditional E-value: 2.1
   TIGR02529  1 GvdlGtanivivvldednk 19
                G+dlGt++  + +  +d+ 
  MMETSP1137-20121227|7312_1 28 GIDLGTTYSCVAIWQNDRV 46
                899***9999988887765 PP

  == domain 2    score: 35.0 bits;  conditional E-value: 3.2e-12
   TIGR02529  43 veivkrlkdklekklGieltkaaiavPPGveegdkkvivnvvesaGlevlkvldePtaaaavlqlk.......ngavvdvGGGttGisilkkGkviysadeatGGthls 144
                 + ++ ++k+ +e  lG+++++a ++vP    + +   + +    aGl+vl++++ePtaaa +  l+       n  + d+GGGt  +s+l   + i+    ++G thl 
  MMETSP1137-20121227|7312_1 142 SMVLTKMKEVAESYLGTNVDNAVVTVPAYFXDAQRASTKDAGSIAGLNVLRIINEPTAAAIAYGLDkssnaerNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLG 250
                 57889***********************9988888888888899****************999997223222234578*********************9999999985 PP

  == domain 3    score: 2.9 bits;  conditional E-value: 0.02
   TIGR02529 188 khiekqkvkdlylvGGassfsefedvfekel 218
                   + k+ ++d+ lvGG++ +++++++++  +
  MMETSP1137-20121227|7312_1 345 AKMSKSAIHDVVLVGGSTRIPKVQSLLSDFF 375
                 5678999***************999987655 PP

>> TIGR01312  XylB: xylulokinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0      0.21   1.4e+02       1      28 [.      27      55 ..      27      61 .. 0.76
   2 !   19.7   0.0   8.2e-08   5.6e-05     368     441 ..     327     404 ..     301     416 .. 0.70

  Alignments for each domain:
  == domain 1    score: -1.4 bits;  conditional E-value: 0.21
   TIGR01312  1 lGiDlgTs.svKallvdekgeviasgsas 28
                +GiDlgT+ s+ a+  +++ e+ia+ + +
  MMETSP1137-20121227|7312_1 27 IGIDLGTTySCVAIWQNDRVEIIANDQGN 55
                7*****97366667677999999987765 PP

  == domain 2    score: 19.7 bits;  conditional E-value: 8.2e-08
   TIGR01312 368 vlegvafalrdsldilkelk..glkikeirliGGGaksevwrqiladilglevvvpe..eeegaalGaAilAaialge 441
                  ++    +++   ++l+++k     i++++l+GG ++ + ++ +l d ++ +   ++   +e++a+GaA++Aai +g+
  MMETSP1137-20121227|7312_1 327 CMDLFRNTMEPVEKVLRDAKmsKSAIHDVVLVGGSTRIPKVQSLLSDFFNGKEPSRSinPDEAVAYGAAVQAAILAGT 404
                 4444444444444555554311356899*********************97655444349*************99873 PP

>> TIGR01174  ftsA: cell division protein FtsA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   0.0       1.6   1.1e+03       3      28 ..      27      49 ..      26      52 .. 0.61
   2 !    7.5   0.0   0.00058       0.4     169     215 ..     185     233 ..     172     252 .. 0.81
   3 !   12.0   0.0   2.5e-05     0.017     277     341 ..     315     378 ..     281     397 .. 0.74
   4 ?   -4.0   0.2       1.8   1.3e+03      79     112 ..     513     547 ..     504     551 .. 0.61

  Alignments for each domain:
  == domain 1    score: -3.8 bits;  conditional E-value: 1.6
   TIGR01174  3 vgldiGtskivaivaevkedgelkii 28
                +g+d+Gt+  ++ +   ++d  ++ii
  MMETSP1137-20121227|7312_1 27 IGIDLGTTYSCVAIW--QNDR-VEII 49
                789999987776543..3333.5555 PP

  == domain 2    score: 7.5 bits;  conditional E-value: 0.00058
   TIGR01174 169 raglevdnivlsslAsakav.Lte.dEkelGvvlidiGggttdiavyte 215
                  agl+v +i+ ++ A+a+a  L++ +  e  v++ d+Gggt d+++ t 
  MMETSP1137-20121227|7312_1 185 IAGLNVLRIINEPTAAAIAYgLDKsSNAERNVLIFDLGGGTFDVSLLTI 233
                 589***************96466524678889***********998764 PP

  == domain 3    score: 12.0 bits;  conditional E-value: 2.5e-05
   TIGR01174 277 erelskkelaeiieaRveEileivkqkelkksglkeelaagivltGGaaqlkgikelaekvfdkk 341
                   ++++++  e      + ++e v +k l++++++++ ++ +vl GG +++  +++l ++ f+ k
  MMETSP1137-20121227|7312_1 315 FSSITRARFEELCMDLFRNTMEPV-EKVLRDAKMSKSAIHDVVLVGGSTRIPKVQSLLSDFFNGK 378
                 445555555555555555566666.599******8888888*******************99854 PP

  == domain 4    score: -4.0 bits;  conditional E-value: 1.8
   TIGR01174  79 hiksqnskgvvaikdk.evtqediervleaakava 112
                 + ++++++ +  ++dk  + + d+e++ + a+  a
  MMETSP1137-20121227|7312_1 513 EKSTNKENKITITNDKsRLSKADVEKMTADAEKYA 547
                 43444444455555555788888888888777655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (669 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       284  (0.0692345); expected 82.0 (0.02)
Passed bias filter:                      129  (0.0314481); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.57u 0.20s 00:00:00.77 Elapsed: 00:00:00.81
# Mc/sec: 1090.13
//
Query:       MMETSP1137-20121227|7313_1  [L=404]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.026   12.5   0.0      0.053   11.5   0.0    1.4  1  TIGR00739 yajC: preprotein translocase, YajC subunit


Domain annotation for each model (and alignments):
>> TIGR00739  yajC: preprotein translocase, YajC subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   1.3e-05     0.053      28      72 ..     177     220 ..     175     226 .. 0.81

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 1.3e-05
   TIGR00739  28 rkahkkliesLkkGdkVltigGligtvtkiaentivieladntki 72 
                  ka++ l++sL+ Gd Vl  +G  + v  +  n+  +e + +  +
  MMETSP1137-20121227|7313_1 177 SKAERVLMSSLRAGDLVLSHSGAEASVSRVIVNQ-HVESDHTSVL 220
                 589999*********************9998777.6666665555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (404 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       135  (0.0329108); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.29u 0.15s 00:00:00.43 Elapsed: 00:00:00.67
# Mc/sec: 795.87
//
Query:       MMETSP1137-20121227|7314_1  [L=321]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (321 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.13s 00:00:00.38 Elapsed: 00:00:00.38
# Mc/sec: 1114.96
//
Query:       MMETSP1137-20121227|7316_1  [L=427]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (427 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       103  (0.0251097); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.13s 00:00:00.43 Elapsed: 00:00:00.43
# Mc/sec: 1310.68
//
Query:       MMETSP1137-20121227|7317_1  [L=381]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (381 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        66  (0.0160897); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.15s 00:00:00.40 Elapsed: 00:00:00.43
# Mc/sec: 1169.48
//
Query:       MMETSP1137-20121227|7318_1  [L=121]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (121 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       149  (0.0363237); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.14s 00:00:00.28 Elapsed: 00:00:00.28
# Mc/sec: 570.38
//
Query:       MMETSP1137-20121227|7319_1  [L=165]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (165 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        71  (0.0173086); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.13s 00:00:00.31 Elapsed: 00:00:00.31
# Mc/sec: 702.52
//
Query:       MMETSP1137-20121227|7320_1  [L=352]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (352 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        89  (0.0216967); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.16s 00:00:00.41 Elapsed: 00:00:00.43
# Mc/sec: 1080.47
//
Query:       MMETSP1137-20121227|7322_1  [L=207]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (207 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        79  (0.0192589); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.14s 00:00:00.33 Elapsed: 00:00:00.32
# Mc/sec: 853.80
//
Query:       MMETSP1137-20121227|7323_1  [L=569]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.011   12.6   3.5        1.4    5.7   0.0    2.5  2  TIGR03805 beta_helix_1: parallel beta-helix repeat-containing protein
      0.029   11.9   0.6      0.091   10.3   0.4    1.9  1  TIGR03804 para_beta_helix: parallel beta-helix repeat


Domain annotation for each model (and alignments):
>> TIGR03805  beta_helix_1: parallel beta-helix repeat-containing protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   0.0   0.00068       1.4       3      31 ..     195     223 ..     193     250 .. 0.82
   2 ?    4.3   2.1    0.0019       3.8     143     206 ..     447     504 ..     423     522 .. 0.70

  Alignments for each domain:
  == domain 1    score: 5.7 bits;  conditional E-value: 0.00068
   TIGR03805   3 ealiaaedgdtivlpeGvfklddalsldv 31 
                  a+ aa++g+ti l  Gv++l d+l++d 
  MMETSP1137-20121227|7323_1 195 RAVRAAAPGETIRLLPGVHMLSDELTVDR 223
                 6899**********************993 PP

  == domain 2    score: 4.3 bits;  conditional E-value: 0.0019
   TIGR03805 143 vrnnvakeNvaGieiENsknadvknNvaenNtg.GilvfdlPdlpvkkgssvrvfeNkildNntp 206
                 vrn +  +   Gi   N  +  v+ N+++ Ntg G+ +        + g +vr+++N ++dN + 
  MMETSP1137-20121227|7323_1 447 VRNVIRSAFGDGISSWNDAEMRVEANHIHSNTGsGVAIN-------SVGGEVRITDNYVFDNAKS 504
                 555555555567777888888888888888887344332.......2367788888888888654 PP

>> TIGR03804  para_beta_helix: parallel beta-helix repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.4   4.4e-05     0.091       1      42 [.     458     501 ..     458     503 .. 0.95

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 4.4e-05
   TIGR03804   1 GIyLesssnntlenNtasnNsy.GIyLydS.snNtlsnNtasnN 42 
                 GI+ ++ ++ ++e N +++N++ G+ +++  ++ ++++N++++N
  MMETSP1137-20121227|7323_1 458 GISSWNDAEMRVEANHIHSNTGsGVAINSVgGEVRITDNYVFDN 501
                 8999999***********************9999*******999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (569 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        83  (0.020234); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.37u 0.13s 00:00:00.50 Elapsed: 00:00:00.55
# Mc/sec: 1365.49
//
Query:       MMETSP1137-20121227|7324_1  [L=406]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (406 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       101  (0.0246221); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.15s 00:00:00.43 Elapsed: 00:00:00.56
# Mc/sec: 940.13
//
Query:       MMETSP1137-20121227|7325_1  [L=57]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        46  (0.011214); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.12s 00:00:00.25 Elapsed: 00:00:00.45
# Mc/sec: 167.19
//
Query:       MMETSP1137-20121227|7327_1  [L=186]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (186 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        52  (0.0126767); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.16s 00:00:00.36 Elapsed: 00:00:01.39
# Mc/sec: 176.62
//
Query:       MMETSP1137-20121227|7329_1  [L=1322]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1322 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       364  (0.0887372); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 1.25u 0.18s 00:00:01.43 Elapsed: 00:00:01.67
# Mc/sec: 1044.85
//
Query:       MMETSP1137-20121227|7330_1  [L=124]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (124 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       109  (0.0265724); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.14s 00:00:00.30 Elapsed: 00:00:00.45
# Mc/sec: 363.70
//
Query:       MMETSP1137-20121227|7331_1  [L=710]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.5e-81  271.6   0.0    4.5e-71  237.7   0.0    2.0  2  TIGR00578 ku70: ATP-dependent DNA helicase II, 70 kDa subunit (ku70)
    0.00013   19.4   0.0    0.00019   18.8   0.0    1.2  1  TIGR02772 Ku_bact: Ku protein


Domain annotation for each model (and alignments):
>> TIGR00578  ku70: ATP-dependent DNA helicase II, 70 kDa subunit (ku70)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  237.7   0.0   2.2e-74   4.5e-71      12     424 ..      76     505 ..      67     539 .. 0.86
   2 !   31.9   0.0   4.6e-12   9.5e-09     456     581 ..     564     687 ..     559     692 .. 0.75

  Alignments for each domain:
  == domain 1    score: 237.7 bits;  conditional E-value: 2.2e-74
   TIGR00578  12 rdsliflvdaskamfeevdgedeltpfdmsikaiksvylskiissdkdllavvlyGtekdknsvn...fkniyvlqdldnPGakrvleldklkgdeGkkkfkdelGhgsdyslaevlwvcanlfs.dvrlrlshkrillltneddPhkndsakadkartkakdlrdtGiildlvhlkk..PGgfdi..sllyrdiitvaededlgvfpeessk.......l.....eellkkvraketkkralsrlklklgkdvklsvgiynlvqkalkPapvklyretneevktktrtfnvdtgelllPsdtkrsqeyGsrkivlekeeteelkr.ldePGllllGfkPlsllkkqhylrPslfvyPeeslvrGsttlfsalllkclekkvaalcryisrrnvaPklvalvpqeeelddqkiqv.vPpGfqlvflPfaddkrkl 424
                 +d +iflvda ++m    +   +++ f +++ +i s + ++i+s d dl++vvl+Gt + + +++   f + yvl + + P    + el kl        f   +  +++  l++ lw  a l+    r r+ +kr+++++++ddP + +++ +++a  +akdl d+ + l+ + lk+  P  fd+  s ++++++ +a+  +     +e+s        l     e l  +vr  +++kra  +++l +++   +s+ +  +vq+  kPa++kl   +ne + + +     + g++l Psdt ++  +G++ + +e  e ++l   l++ Gl llGfkPl  lk  h lrP  f+ P e+  +Gst   +al     + + +a+c +   r  + +lval+pq+ +ld +   v  P Gf++v+lP+ad+ r  
  MMETSP1137-20121227|7331_1  76 KDCIIFLVDARRSMIS-AEVAGQKSRFLQALSCIASCMRERIVSGDSDLVGVVLFGTAESRAPNEmqpFPHTYVLLEPEVPSGAAIRELTKLVETADLSAFG-CMADAAELELSNTLWLVAMLLNaTPRARACRKRVIVISDDDDPSAAKADAKQRAMLRAKDLADAKVKLEPIFLKPapPRHFDLshSSFWKQLLDEAQPAHAETGVDEASEaeswtsgLlcvdeEALSARVRRTQHRKRAYGSVDLRISESQLISLRLVTVVQPFAKPAATKLHAASNEALASERTLLCNQHGSVLQPSDTFKACDFGGKWVFFEPYELKQLGAgLAPLGLALLGFKPLERLKPYHSLRPPVFLEPSEAR-QGSTCAVQALAAAMGRTRKVAICTFS--RGATLRLVALLPQQRQLDAHTGSVhLPDGFHMVHLPWADEVRSP 505
                 89*************9.6777899**********************************999887644488**********************9997777775.6788999999******99987615699**********************************************96437779872257******99986544444444333111111212444356779*********************************************************************************************7538999*****************************86.8**********************996..455679*************998873699***********99964 PP

  == domain 2    score: 31.9 bits;  conditional E-value: 4.6e-12
   TIGR00578 456 fenPvlqqhfrnlealaldlleaeqakdltlPkveklkkrlGelvdefkelvyPpdyapegkvakrkqagegsaskkpkvelseeelreevkkGtlgkltvsvlkdickaeGlrsgskkqelldal 581
                   nP   ++f  ++a+ l   + e ++d tlP+ e l  +  +++  f+++ +    a+ g ++   +  +  +   p+++ +  el ++  +  l++ltv+ lk +ck++ l  g+kk++l+  +
  MMETSP1137-20121227|7331_1 564 IANPAAHRYFAIMQAVVLGSADVELTVDGTLPDNEWLGSH-SDMIRRFLDV-FGVSPAAPGTASESSRLPKKXKRSAPQTDAEWMELYKKEGREGLAELTVPELKTFCKRNSLAVGGKKDDLVTRI 687
                 679*******************************998765.4667777774.4333333333333333333334444555555557777777778***************************9766 PP

>> TIGR02772  Ku_bact: Ku protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.0   9.5e-08   0.00019      34     200 ..     348     532 ..     329     539 .. 0.83

  Alignments for each domain:
  == domain 1    score: 18.8 bits;  conditional E-value: 9.5e-08
   TIGR02772  34 ldretgervkykk..vdeetgkeveeeeivkgyeyekgkyvilededleslklest.ktieieaFvdadeidliy.fdkpYylaPd.kkgek..ayallrealeetgkvgiakvvlrsrerlvalrplgk.............alvlttLrypdevrseeelfaeikkakvdaeelelakkliekka 200
                 l++ ++e + +++  ++++ g +++ ++  k+ ++  gk+v  e+ +l++l    +   + +  F + +++++++ +  p +l+P+ +++    a   l+ a+ +t kv+i  +   +  rlval p+++             +  ++ L ++devrs+  l+ + +  +++a +l  a++l++ +a
  MMETSP1137-20121227|7331_1 348 LHAASNEALASERtlLCNQHGSVLQPSDTFKACDFG-GKWVFFEPYELKQLGAGLApLGLALLGFKPLERLKPYHsLRPPVFLEPSeARQGStcAVQALAAAMGRTRKVAICTFSRGATLRLVALLPQQRqldahtgsvhlpdGFHMVHLPWADEVRSP-ALPPPLDIGDFSAGQLGAARALVQGLA 532
                 6666666666555337999*************9996.99************99877589*************997367789****98555551155569*****************************999999*****99999**************9.777777777788888888888887665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (710 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        67  (0.0163335); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.13s 00:00:00.60 Elapsed: 00:00:00.57
# Mc/sec: 1615.73
//
Query:       MMETSP1137-20121227|7332_1  [L=717]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (717 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       165  (0.0402243); expected 82.0 (0.02)
Passed bias filter:                      101  (0.0246221); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.47u 0.14s 00:00:00.61 Elapsed: 00:00:00.51
# Mc/sec: 1855.61
//
Query:       MMETSP1137-20121227|7333_1  [L=146]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.034   10.5   0.1       0.11    8.8   0.0    1.6  2  TIGR04028 SBP_KPN_01854: ABC transporter substrate binding protein, KPN_01854 family


Domain annotation for each model (and alignments):
>> TIGR04028  SBP_KPN_01854: ABC transporter substrate binding protein, KPN_01854 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.0      0.01        42     237     272 ..      29      64 ..      15      70 .. 0.88
   2 ?    8.8   0.0   2.7e-05      0.11     436     488 ..      73     125 ..      51     136 .. 0.81

  Alignments for each domain:
  == domain 1    score: 0.3 bits;  conditional E-value: 0.01
   TIGR04028 237 kqlekqglkiyaaatrgvnnslafrfdnplladirv 272
                 kql+++  +  a+at gv++   +r+ +  l++ir 
  MMETSP1137-20121227|7333_1  29 KQLATKAARKSAPATGGVKKPHRYRPGTVALREIRR 64 
                 68888889999*****************99999985 PP

  == domain 2    score: 8.8 bits;  conditional E-value: 2.7e-05
   TIGR04028 436 lvdekldelleaiasetdeeerlaasaevqeylldqayvlPlfeePqvfavap 488
                 ++   +++l+++ia++ +++ r + sa v  + + +ay++ lfe+ +  a+++
  MMETSP1137-20121227|7333_1  73 IRKLPFQRLVREIAQDFKTDLRFQSSAVVALQEASEAYLVGLFEDTNLCAIHA 125
                 44455699*********************9999************99888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (146 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        71  (0.0173086); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.19u 0.13s 00:00:00.32 Elapsed: 00:00:00.45
# Mc/sec: 428.23
//
Query:       MMETSP1137-20121227|7334_1  [L=760]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (760 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        88  (0.0214529); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.15s 00:00:00.61 Elapsed: 00:00:00.88
# Mc/sec: 1139.91
//
Query:       MMETSP1137-20121227|7335_1  [L=414]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (414 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       101  (0.0246221); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.18s 00:00:00.49 Elapsed: 00:00:00.45
# Mc/sec: 1214.30
//
Query:       MMETSP1137-20121227|7336_1  [L=83]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (83 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.28
# Mc/sec: 377.76
//
Query:       MMETSP1137-20121227|7337_1  [L=85]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (85 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        31  (0.00755729); expected 82.0 (0.02)
Passed bias filter:                       30  (0.00731351); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.14s 00:00:00.27 Elapsed: 00:00:00.28
# Mc/sec: 386.86
//
Query:       MMETSP1137-20121227|7338_1  [L=465]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (465 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        89  (0.0216967); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.15s 00:00:00.47 Elapsed: 00:00:00.33
# Mc/sec: 1859.85
//
Query:       MMETSP1137-20121227|7339_1  [L=541]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (541 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        51  (0.012433); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.16s 00:00:00.52 Elapsed: 00:00:00.68
# Mc/sec: 1050.09
//
Query:       MMETSP1137-20121227|7340_1  [L=453]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (453 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        50  (0.0121892); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.14s 00:00:00.47 Elapsed: 00:00:00.45
# Mc/sec: 1328.69
//
Query:       MMETSP1137-20121227|7341_1  [L=3299]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.9e-14   50.7   0.1    1.6e-12   44.3   0.0    2.4  2  TIGR03714 secA2: accessory Sec system translocase SecA2
    2.5e-07   27.1   0.0      0.044    9.8   0.1    3.4  3  TIGR00963 secA: preprotein translocase, SecA subunit
     0.0002   18.7   0.3    0.00067   17.0   0.0    1.9  2  TIGR01978 sufC: FeS assembly ATPase SufC
    0.00032   18.1   0.1     0.0008   16.7   0.0    1.6  1  TIGR03864 PQQ_ABC_ATP: ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system
    0.00047   17.5   0.0     0.0032   14.8   0.0    2.3  2  TIGR01166 cbiO: cobalt ABC transporter, ATP-binding protein
     0.0026   15.3   0.0     0.0065   14.0   0.0    1.6  1  TIGR02673 FtsE: cell division ATP-binding protein FtsE
     0.0046   13.4   0.1     0.0079   12.6   0.1    1.2  1  TIGR00955 3a01204: pigment precursor permease
     0.0061   13.9   0.0      0.013   12.8   0.0    1.5  1  TIGR03608 L_ocin_972_ABC: putative bacteriocin export ABC transporter, lactococcin 972 group
     0.0072   13.9   0.1      0.021   12.4   0.0    1.7  1  TIGR00960 3a0501s02: type II secretory pathway family protein
  ------ inclusion threshold ------
      0.015   12.8   0.4      0.038   11.5   0.0    1.8  2  TIGR03411 urea_trans_UrtD: urea ABC transporter, ATP-binding protein UrtD
      0.021   12.5   0.1      0.088   10.4   0.0    2.1  2  TIGR00231 small_GTP: small GTP-binding protein domain
      0.023   11.8   0.1      0.071   10.2   0.1    1.8  1  TIGR01188 drrA: daunorubicin resistance ABC transporter, ATP-binding protein
       0.12    9.8   0.1       0.24    8.8   0.0    1.3  1  TIGR03740 galliderm_ABC: lantibiotic protection ABC transporter, ATP-binding subunit


Domain annotation for each model (and alignments):
>> TIGR03714  secA2: accessory Sec system translocase SecA2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.0     0.011       3.4      87     142 ..    2736    2791 ..    2732    2807 .. 0.87
   2 !   44.3   0.0   5.1e-15   1.6e-12     455     597 ..    3130    3267 ..    3059    3284 .. 0.67

  Alignments for each domain:
  == domain 1    score: 3.6 bits;  conditional E-value: 0.011
   TIGR03714   87 iaemktGeGktLtatmplYLnalegkgallvttndYLakrDaeelgkvYrflGltv 142 
                  +a++ tGeGk L+   +  + al g  +  v   + L++rD  +++ +++ +G+  
  MMETSP1137-20121227|7341_1 2736 LAQVPTGEGKSLILGTTATVLALLGYRVECVCYSSILSTRDGDDFASMFEQFGVRD 2791
                  7999********9888888889****************************999854 PP

  == domain 2    score: 44.3 bits;  conditional E-value: 5.1e-15
   TIGR03714  455 naqnvakeaqiiaeaGqkgavtvatslaGrGtDikL.gkgvkelGGLavigtermensrvdlqlrGrsGrqGDpGlsqffvsleDdlvkknspsklkkykkkkekkeskekekallkrrvrkivekaqraseekaesareqtie 597 
                    q  a     i  a q+g vt++t+  GrGtD k+  + vke GG+ v+ t   e+   + q+ Gr GrqGD G+  + +s e +lv ++  +   +  +  +  ++ + +       +r++ +   ++see+ +  r+++ e
  MMETSP1137-20121227|7341_1 3130 EEQVRADRNDAIRRATQTGFVTLCTAAFGRGTDFKIiDRRVKESGGMHVLSTFFPEEVSEEVQIIGRGGRQGDDGSFSMVLSAE-ELVADWPRTVTCESLEAWRAGDNATPS-----IVYRELAQVRAKQSEETLQGHRKKAKE 3267
                  344456667789***********************73679************99999999****************99999987.688998877777666655544443222.....222333333333444444444444444 PP

>> TIGR00963  secA: preprotein translocase, SecA subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.2   0.0   0.00088      0.28      71     127 ..    2734    2790 ..    2718    2800 .. 0.92
   2 !    5.8   0.0    0.0022       0.7     379     472 ..    3066    3165 ..    3056    3169 .. 0.73
   3 !    9.8   0.1   0.00014     0.044     512     557 ..    3169    3214 ..    3166    3264 .. 0.92

  Alignments for each domain:
  == domain 1    score: 7.2 bits;  conditional E-value: 0.00088
   TIGR00963   71 gkiaEmktGEGktLvavlpaylnaLtgkgvhvvtvndYLakrdaeevgkvlrflgls 127 
                  +++a + tGEGk L+   +a + aL g  v  v     L+ rd +  +++++ +g++
  MMETSP1137-20121227|7341_1 2734 NHLAQVPTGEGKSLILGTTATVLALLGYRVECVCYSSILSTRDGDDFASMFEQFGVR 2790
                  6789999*******************************************9999875 PP

  == domain 2    score: 5.8 bits;  conditional E-value: 0.0022
   TIGR00963  379 desDlvykteeekfkAvveeiaeahkkg...rPvLvGttsveksEll..skllkekrikhevLnak.nherEaeiiaqaGkkgavtiatnmAGRGtDikL 472 
                  d+   + + e   f+A+++ei ++ + g   rPvLv  ++ +k      s+++   r    ++      +   + i +a + g vt+ t   GRGtD k+
  MMETSP1137-20121227|7341_1 3066 DHAHKLSMHEGDHFQAIASEIDRRRSGGkspRPVLVFFKQADKLKRFldSSYFDAFREMSGIITEEqVRADRNDAIRRATQTGFVTLCTAAFGRGTDFKI 3165
                  5666667788899********998865533379**9888777654332344555544445555555256667889**********************875 PP

  == domain 3    score: 9.8 bits;  conditional E-value: 0.00014
   TIGR00963  512 evvelGGLyviGterhesrRiDnqLRGRsgRqGDpgssrFflsleD 557 
                  +v+e GG++v+ t   e    + q+ GR gRqGD gs    ls e+
  MMETSP1137-20121227|7341_1 3169 RVKESGGMHVLSTFFPEEVSEEVQIIGRGGRQGDDGSFSMVLSAEE 3214
                  799***********99999999***************999999875 PP

>> TIGR01978  sufC: FeS assembly ATPase SufC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.0   2.1e-06   0.00067      31      75 ..     561     607 ..     556     610 .. 0.85
   2 ?   -2.1   0.0       1.4   4.5e+02     100     137 ..    1719    1756 ..    1708    1796 .. 0.77

  Alignments for each domain:
  == domain 1    score: 17.0 bits;  conditional E-value: 2.1e-06
   TIGR01978  31 imGpnGsGkstLskvlaghekyevtsGeiklkgqdll..eleveera 75 
                 ++G  G+GkstL ++lag++ y+ ++G+ ++ g++++   + ++e a
  MMETSP1137-20121227|7341_1 561 LLGNTGAGKSTLLNILAGKQLYRTETGKAAVVGEHITgsRIAPDESA 607
                 79*****************************9999962245666655 PP

  == domain 2    score: -2.1 bits;  conditional E-value: 1.4
   TIGR01978  100 salnavrkargeeeldllefekllkeklelleldeell 137 
                  +a+    +++ ++++++++f+++l+++l +l+ +++l+
  MMETSP1137-20121227|7341_1 1719 AAVAREAQKELKAKISAHDFSDELQAELCQLRESAKLS 1756
                  344444445667789**********9998888777665 PP

>> TIGR03864  PQQ_ABC_ATP: ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0   2.6e-06    0.0008      31      66 ..     560     597 ..     549     603 .. 0.88

  Alignments for each domain:
  == domain 1    score: 16.7 bits;  conditional E-value: 2.6e-06
   TIGR03864  31 aLLGpnGaGkstLfslltr..LyeakegeikvaGldlr 66 
                  LLG  GaGkstL+++l++  Ly++++g+ +v+G  ++
  MMETSP1137-20121227|7341_1 560 FLLGNTGAGKSTLLNILAGkqLYRTETGKAAVVGEHIT 597
                 69***************86559************9876 PP

>> TIGR01166  cbiO: cobalt ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0      0.81   2.5e+02      20      75 ..     281     339 ..     270     353 .. 0.73
   2 !   14.8   0.0     1e-05    0.0032      18      60 ..     556     600 ..     540     623 .. 0.85

  Alignments for each domain:
  == domain 1    score: -1.2 bits;  conditional E-value: 0.81
   TIGR01166  20 vlallGanGaGkstlllhlnGllrPksGkvlld...Geeldysrkgllelrkkvalvlq 75 
                 v a+  a G+  + l++ l+  l+P++ k   +    + +d++r +l +  ++ + ++q
  MMETSP1137-20121227|7341_1 281 VAAVATAVGSTTAELVSGLASHLKPNENKRFNGiayTDLVDWDRVSLASSSRTWESLIQ 339
                 34556678999999***********9988654311145689999999988887777776 PP

  == domain 2    score: 14.8 bits;  conditional E-value: 1e-05
   TIGR01166  18 gevlallGanGaGkstlllhlnG..llrPksGkvlldGeeldysr 60 
                 + +l llG+ GaGkstll+ l+G  l r ++Gk  + Ge++  sr
  MMETSP1137-20121227|7341_1 556 APSLFLLGNTGAGKSTLLNILAGkqLYRTETGKAAVVGEHITGSR 600
                 67889******************44479999**999999887665 PP

>> TIGR02673  FtsE: cell division ATP-binding protein FtsE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.0     2e-05    0.0065      31      67 ..     559     597 ..     550     603 .. 0.85

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 2e-05
   TIGR02673  31 lfltGasGaGkttllklllgae..kpsrGevevagedva 67 
                 lfl G+ GaGk+tll++l g++  +++ G+  v ge+++
  MMETSP1137-20121227|7341_1 559 LFLLGNTGAGKSTLLNILAGKQlyRTETGKAAVVGEHIT 597
                 7*****************987623678899999999886 PP

>> TIGR00955  3a01204: pigment precursor permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.6   0.1   2.5e-05    0.0079      56      93 ..     561     597 ..     558     611 .. 0.83

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 2.5e-05
   TIGR00955  56 vlGsSGaGKtTLlnalafrsekglkvsgdvllnGekve 93 
                 +lG  GaGK+TLln+la ++   +++ g+ ++ Ge+++
  MMETSP1137-20121227|7341_1 561 LLGNTGAGKSTLLNILAGKQLYRTET-GKAAVVGEHIT 597
                 89****************99988888.56666677665 PP

>> TIGR03608  L_ocin_972_ABC: putative bacteriocin export ABC transporter, lactococcin 972 group
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.8   0.0   4.1e-05     0.013      29      58 ..     561     592 ..     552     621 .. 0.77

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 4.1e-05
   TIGR03608  29 ivGesGsGKstlLnilgl..lekkdsgkvile 58 
                 ++G+ G+GKstlLnil+   l ++++gk  + 
  MMETSP1137-20121227|7341_1 561 LLGNTGAGKSTLLNILAGkqLYRTETGKAAVV 592
                 78**************9611445566665555 PP

>> TIGR00960  3a0501s02: type II secretory pathway family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.4   0.0   6.5e-05     0.021      32      68 ..     559     597 ..     552     602 .. 0.86

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 6.5e-05
   TIGR00960  32 vflvGhsGaGkstllklilgie..kpsaGkirvsgqdlt 68 
                  fl G++GaGkstll+++ g +  ++ +Gk  v g+++t
  MMETSP1137-20121227|7341_1 559 LFLLGNTGAGKSTLLNILAGKQlyRTETGKAAVVGEHIT 597
                 69****************987633788999999999997 PP

>> TIGR03411  urea_trans_UrtD: urea ABC transporter, ATP-binding protein UrtD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   0.00012     0.038      32      68 ..     560     598 ..     556     606 .. 0.87
   2 ?   -4.1   0.1         7   2.2e+03     169     212 ..     715     760 ..     704     767 .. 0.63

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 0.00012
   TIGR03411  32 viiGpnGaGkttllDvitGkt..rpdeGsvlfkgkdltk 68 
                 +++G  GaGk+tll++++Gk   r+++G++ + g+++t+
  MMETSP1137-20121227|7341_1 560 FLLGNTGAGKSTLLNILAGKQlyRTETGKAAVVGEHITG 598
                 689****************96559999*99999998886 PP

  == domain 2    score: -4.1 bits;  conditional E-value: 7
   TIGR03411 169 ePvaGmtdeet.ektaellkelakersvvvvehD.mefvrelaekv 212
                 e  aG+ de + +k+ +++k+l++ ++  v + D ++f++++ e+v
  MMETSP1137-20121227|7341_1 715 ERLAGFNDEKMdKKMQQVVKALNNIKAARVNDKDaVNFIKAILEQV 760
                 5567777666513456677777777777777777457777776666 PP

>> TIGR00231  small_GTP: small GTP-binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   0.00028     0.088       6      35 ..     559     588 ..     555     620 .. 0.86
   2 ?   -3.7   0.0         6   1.9e+03     114     150 ..    3098    3134 ..    3094    3140 .. 0.80

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 0.00028
   TIGR00231   6 ivivGhvdvGKstLlnsllknkisiteskp 35 
                 + ++G  ++GKstLln l++++   te+++
  MMETSP1137-20121227|7341_1 559 LFLLGNTGAGKSTLLNILAGKQLYRTETGK 588
                 6689******************99999876 PP

  == domain 2    score: -3.7 bits;  conditional E-value: 6
   TIGR00231  114 piilvvnKiDlkd.dlktkvkslfaklnaepiielsae 150 
                  p+++++++ D+ +  l++++ + f ++++ +i+e++++
  MMETSP1137-20121227|7341_1 3098 PVLVFFKQADKLKrFLDSSYFDAFREMSG-IITEEQVR 3134
                  899*******9998899999999999998.55565555 PP

>> TIGR01188  drrA: daunorubicin resistance ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.1   0.00022     0.071      24      58 ..     561     597 ..     557     601 .. 0.89

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 0.00022
   TIGR01188  24 lLGPnGAGKtttikmLtt..llkPdsGtarvaGyDvv 58 
                 lLG  GAGK+t++++L++  l + + G+a v G  ++
  MMETSP1137-20121227|7341_1 561 LLGNTGAGKSTLLNILAGkqLYRTETGKAAVVGEHIT 597
                 79**************965599**********98775 PP

>> TIGR03740  galliderm_ABC: lantibiotic protection ABC transporter, ATP-binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   0.0   0.00077      0.24      31      65 ..     561     597 ..     556     603 .. 0.83

  Alignments for each domain:
  == domain 1    score: 8.8 bits;  conditional E-value: 0.00077
   TIGR03740  31 llGpnGaGkstllklltG..llrktsGeilldgrewt 65 
                 llG  GaGkstll +l+G  l r ++G+  + g+++t
  MMETSP1137-20121227|7341_1 561 LLGNTGAGKSTLLNILAGkqLYRTETGKAAVVGEHIT 597
                 89***************96667888888888777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (3299 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       269  (0.0655778); expected 82.0 (0.02)
Passed bias filter:                      120  (0.029254); expected 82.0 (0.02)
Passed Vit filter:                        53  (0.0129205); expected 4.1 (0.001)
Passed Fwd filter:                        13  (0.00316919); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 2.43u 0.18s 00:00:02.61 Elapsed: 00:00:01.80
# Mc/sec: 2419.07
//
Query:       MMETSP1137-20121227|7342_1  [L=146]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (146 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        98  (0.0238908); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.13s 00:00:00.29 Elapsed: 00:00:00.40
# Mc/sec: 481.76
//
Query:       MMETSP1137-20121227|7343_1  [L=618]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.8e-78  262.1  27.1    5.3e-70  234.2  13.7    2.1  2  TIGR00886 2A0108: nitrite transporter
    5.6e-06   23.4  14.2    5.6e-06   23.4   9.9    2.3  2  TIGR00893 2A0114: D-galactonate transporter
    5.7e-05   20.0   6.4    5.7e-05   20.0   4.5    2.5  3  TIGR00895 2A0115: MFS transporter, aromatic acid:H+ symporter (AAHS) family
    0.00025   18.0  19.4    0.00025   18.0  13.4    3.5  3  TIGR00881 2A0104: phosphoglycerate transporter family protein


Domain annotation for each model (and alignments):
>> TIGR00886  2A0108: nitrite transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  234.2  13.7   5.2e-73   5.3e-70       1     313 [.      66     377 ..      66     396 .. 0.92
   2 !   32.6   0.5   9.3e-12   9.6e-09     322     368 .]     475     521 ..     457     521 .. 0.86

  Alignments for each domain:
  == domain 1    score: 234.2 bits;  conditional E-value: 5.2e-73
   TIGR00886   1 raLflswlafflsFlvWfalspLvvqiik.edlgLskaqlallvavpvlatavlRiilgflvdkfGpRkttallllllaiPllllalavssfsellllrlliGiaGasFvislamisefFpkkevGtAlglaaGlGNlGggvaqlvmpaiieallkgagqpakkawrvalvlvpalillliallvfvvvadtppgksaeaklsvksallslekealaevlkvlkeketwilallYivtFGselgvssilaallkdqfglskveagayasllallgllaRplGGllsDklgg.....arkllvlfllvamgaalvvlglv 313
                 r +++++++ff sF+++fa +pL+ +i k e+l+L+k++++++++  v++t+ +R+i g l++kfG R+ +   l+l++  ++ +a+ + s+s++++ r++iG++ asFv ++ ++s+ F+k++vG A++ a+G+GNlGgg++ lvmp i+ a+l+++ ++  ++wr  + +vp  + ll +  +++++ d p g+ +e + s      +++ ++  +v+  + + + wil ++Y  +FG+el++ ++ a ++ +  g+s+ +ag +a+ ++l++l+aR+ GG++sD +++     +r +++++++v  ga++v++gl 
  MMETSP1137-20121227|7343_1  66 RGFWAATFGFFSSFFSTFAAAPLMAYIKKpESLDLTKSDIGNSNIASVAGTIGMRLISGWLCEKFGARRAFFGILMLAVPGIIGIAFTQ-SASGFIICRFIIGLGLASFVTCQVWCSQLFNKSIVGAANATAGGWGNLGGGITNLVMPYIMLAFLNATDEDEDLSWRLCY-IVPLAMHLLGGA-FVLSGRDLPDGNFSELESSGA----KQKAKSNVAVKLGISNINAWILLVTYGFCFGVELTMTNVAALYFYRYHGISPQKAGTFAACFGLMNLFARSWGGIISDTMNKrfgmrGRLWAMWIAQVTEGAFCVIMGLA 377
                 569**********************9988789***************************************999999999999999999.********************************************************************99999*****99.998876666665.56789*******877777744....22222333567779999******************************************************************************************986 PP

  == domain 2    score: 32.6 bits;  conditional E-value: 9.3e-12
   TIGR00886 322 vavvlfvvlflfvglgnGstFalvpvvfrratgavsGlvgaiGnlGg 368
                 +++ ++++++  v++++G +F +vp+v+r a g+vsG+vga+Gn G+
  MMETSP1137-20121227|7343_1 475 LVLFIMIMFSTCVQMAEGLHFGVVPYVSRPALGIVSGMVGAGGNAGA 521
                 3455677788899********************************96 PP

>> TIGR00893  2A0114: D-galactonate transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.4   9.9   5.4e-09   5.6e-06      23     302 ..      97     377 ..      81     395 .. 0.74
   2 ?   -4.5   0.6       1.5   1.6e+03     339     363 ..     500     524 ..     474     555 .. 0.55

  Alignments for each domain:
  == domain 1    score: 23.4 bits;  conditional E-value: 5.4e-09
   TIGR00893  23 dLglsaaqyglvfsafsigyvlfqlpggllldriGakktlavaivlWglftllqafatalvslivlRvllGlaEaplfPgiikivasWFPakeratavsifnsaqalgaiiggplvgwilvefs..........WqlvFiieGvlaiilgvlilkvikdkpekakvlkeeeksivvggllaeqagkknseakkaqikelLkdrrviglalgqflvnillyffltwfplylkqerglslleagllaslpaivgfvgmvlggilsdlllkkg......kslvlarktaiiaglvlsll 302
                  L l++ ++g +  a  +g + + l +g+l++++Ga+   + +++l     +  af +++ ++i+ R+++Gl  a ++ +     ++ F ++  ++a++       lg+ i + ++  i+ +f           W+l +i+  ++ ++ g  +l   +d p+    +  e +s  +++     +      +++ ++k  + ++++++l + +     +  ++   + ly     g+s+ +ag +a+  +++ + +   ggi+sd++ k++      + + +a  t    ++++ l+
  MMETSP1137-20121227|7343_1  97 SLDLTKSDIGNSNIASVAGTIGMRLISGWLCEKFGARRAFFGILMLAVPGIIGIAFTQSASGFIICRFIIGLGLASFVTCQV-WCSQLFNKSIVGAANATAGGWGNLGGGITNLVMPYIMLAFLnatdededlsWRLCYIVPLAMHLLGGAFVLSG-RDLPD---GNFSELESSGAKQ-----KA-----KSNVAVKLGISNINAWILLVTYGFCFGVELTMTNVAALYFYRYHGISPQKAGTFAACFGLMNLFARSWGGIISDTMNKRFgmrgrlWAMWIAQVTEGAFCVIMGLA 377
                 57788888888888889999999*****************999888777777789999*****************9998876.5667777776666666555555555555555555544444445569*99999999999888777766655544.55555...5555555555555.....12.....234689999********99988555555555555699******************************************999666666666666555554333333 PP

  == domain 2    score: -4.5 bits;  conditional E-value: 1.5
   TIGR00893 339 vlskeiagltgGlinllGnlagivg 363
                 ++s+ + g++ G++ + Gn++++++
  MMETSP1137-20121227|7343_1 500 YVSRPALGIVSGMVGAGGNAGAVLT 524
                 3444455555555555555555444 PP

>> TIGR00895  2A0115: MFS transporter, aromatic acid:H+ symporter (AAHS) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   4.5   5.6e-08   5.7e-05      45     124 ..      96     175 ..      67     213 .. 0.86
   2 ?    2.3   0.9     0.014        14      19     103 ..     287     378 ..     270     382 .. 0.76
   3 ?   -4.3   0.4       1.4   1.4e+03     294     328 ..     513     547 ..     507     554 .. 0.58

  Alignments for each domain:
  == domain 1    score: 20.0 bits;  conditional E-value: 5.6e-08
   TIGR00895  45 kewgldkvelGfllsagLiGmvlGallfgplaDrigRkrvllvsillfsvftlasalatnvtqLlvlRflaglGlGgllp 124
                 ++++l+k+++G    a+++G++   l++g+l+ ++g +r+    ++l   + ++ a++++   +++ Rf+ glGl + + 
  MMETSP1137-20121227|7343_1  96 ESLDLTKSDIGNSNIASVAGTIGMRLISGWLCEKFGARRAFFGILMLAVPGIIGIAFTQSASGFIICRFIIGLGLASFVT 175
                 4789999999999999999*99999***********99999888888778999**********************87654 PP

  == domain 2    score: 2.3 bits;  conditional E-value: 0.014
   TIGR00895  19 lilsflivlvdGldllvlgfaapalskewgldkvelGflls.ag...LiGmvlGallfgplaDrig...Rkrvllvsillfsvftlasalat 103
                  il +   ++ G++l +  +aa    +  g+++ ++G   + +g   L+    G++++ ++  r+g   R  ++ ++ ++ ++f + ++lat
  MMETSP1137-20121227|7343_1 287 WILLVTYGFCFGVELTMTNVAALYFYRYHGISPQKAGTFAAcFGlmnLFARSWGGIISDTMNKRFGmrgRLWAMWIAQVTEGAFCVIMGLAT 378
                 45555566788999***********************7654245111455567************985555666777777788888887775 PP

  == domain 3    score: -4.3 bits;  conditional E-value: 1.4
   TIGR00895 294 lnvGgvlgslllgaladrlgpkvlalllllaavfa 328
                 + +Gg +g++l+ + + +   ++ + +++l++v++
  MMETSP1137-20121227|7343_1 513 VGAGGNAGAVLTLWTIFKQVDRTDTGFMILGGVII 547
                 45556666666666555555555556666666654 PP

>> TIGR00881  2A0104: phosphoglycerate transporter family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.0     0.099     1e+02     338     368 ..      60      90 ..      53     102 .. 0.78
   2 !   18.0  13.4   2.4e-07   0.00025      17     287 ..      88     353 ..      72     380 .. 0.74
   3 ?   -1.2   1.9      0.17   1.7e+02      86     170 ..     477     556 ..     470     562 .. 0.74

  Alignments for each domain:
  == domain 1    score: -0.5 bits;  conditional E-value: 0.099
   TIGR00881 338 lapkkaiGtaaglvglfaylggilaglplgy 368
                 +  +++ G  a+ +g+f++ ++ +a +pl  
  MMETSP1137-20121227|7343_1  60 CHNPHMRGFWAATFGFFSSFFSTFAAAPLMA 90 
                 5566777888999*********888877643 PP

  == domain 2    score: 18.0 bits;  conditional E-value: 2.4e-07
   TIGR00881  17 alpelq..eeiglsktdlGlllsafsiaYgis.kfvvgvvsDrvsarvflaigLilvaivnlflgfssslwvliallalnGlfqglgwppcgrlltkwfsrserGtvvaiwnishnvggallpplvl.laiall........lswhvvfivpgiiaiivslilllllrdspqsvglpkleelrneekeedkekkeeeltkkeillqyvlknkvlwlislvnvfvyvvrtgiedWvplYltqekglskekasvavtlfelaglvGtllaGwlsDklfkgrrapl 287
                 ++++++  e+++l+k+d+G      s+a +i+ ++++g++  + +ar  ++  L+l+    ++++f +s   +i+ +++ Gl   + +++c+    ++f++s  G + a      n+gg++   ++  +++a+l        lsw+  +ivp ++ ++ + ++l  +rd p     ++le        ++k+k      k +  ++  + n+++w++ + + f + v + +++ + lY     g+s +ka ++   f l  l      G++sD    ++r+ +
  MMETSP1137-20121227|7343_1  88 LMAYIKkpESLDLTKSDIGNS-NIASVAGTIGmRLISGWLCEKFGARRAFFGILMLAVPGIIGIAFTQSASGFIICRFIIGLGL-ASFVTCQVWCSQLFNKSIVGAANATAGGWGNLGGGITNLVMPyIMLAFLnatdededLSWRLCYIVPLAMHLLGGAFVL-SGRDLPDG-NFSELES------SGAKQK-----AKSNVAVKLGISNINAWILLVTYGFCFGVELTMTNVAALYFYRYHGISPQKAGTFAACFGLMNLFARSWGGIISDT--MNKRFGM 353
                 46666544899********74.5567888887689************9987777777677899******************965.468999999***************999999*****98854432334444111222224555556666555554444332.34444432.2333332......223333.....466677778899***************************************************************4..3333333 PP

  == domain 3    score: -1.2 bits;  conditional E-value: 0.17
   TIGR00881  86 liallalnGlfqglgwppcgrlltkwfsrserGtvvaiwnishnvggallpplvllaialllswhvvfivpgiiaiivslillll 170
                 l+++++++  +q +     g  ++ ++sr   G v ++   + n +ga+l+  + ++++++ +    f++ g + i  s++  l+
  MMETSP1137-20121227|7343_1 477 LFIMIMFSTCVQMAEGLHFG--VVPYVSRPALGIVSGMVGAGGN-AGAVLT--LWTIFKQVDRTDTGFMILGGVIIGTSFLQWLI 556
                 55666666666666655555..6678888888888888888887.567777..67888888888888999999999999986655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (618 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       160  (0.0390054); expected 82.0 (0.02)
Passed bias filter:                       98  (0.0238908); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.51u 0.16s 00:00:00.67 Elapsed: 00:00:00.76
# Mc/sec: 1073.28
//
Query:       MMETSP1137-20121227|7344_1  [L=182]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (182 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        49  (0.0119454); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.13s 00:00:00.30 Elapsed: 00:00:00.30
# Mc/sec: 800.73
//
Query:       MMETSP1137-20121227|7345_1  [L=475]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (475 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       173  (0.0421745); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.14s 00:00:00.47 Elapsed: 00:00:00.72
# Mc/sec: 870.76
//
Query:       MMETSP1137-20121227|7346_1  [L=143]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (143 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        89  (0.0216967); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.18s 00:00:00.35 Elapsed: 00:00:00.32
# Mc/sec: 589.83
//
Query:       MMETSP1137-20121227|7348_1  [L=380]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   3.3e-152  504.4   0.0   3.7e-152  504.3   0.0    1.0  1  TIGR01520 FruBisAldo_II_A: fructose-bisphosphate aldolase, class II
    7.9e-95  315.4   0.0    9.2e-95  315.1   0.0    1.0  1  TIGR00167 cbbA: ketose-bisphosphate aldolases
    1.3e-41  141.0   0.0    2.7e-41  140.0   0.0    1.5  1  TIGR01859 fruc_bis_ald_: fructose-1,6-bisphosphate aldolase, class II
    1.9e-25   87.4   0.1      3e-24   83.4   0.1    2.8  1  TIGR01858 tag_bisphos_ald: class II aldolase, tagatose bisphosphate family
    2.4e-16   57.6   0.3    8.6e-08   29.5   0.1    3.5  3  TIGR01521 FruBisAldo_II_B: fructose-bisphosphate aldolase, class II, Calvin cycle subtype


Domain annotation for each model (and alignments):
>> TIGR01520  FruBisAldo_II_A: fructose-bisphosphate aldolase, class II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  504.3   0.0  4.5e-155  3.7e-152       4     344 ..      39     379 ..      36     380 .] 0.98

  Alignments for each domain:
  == domain 1    score: 504.3 bits;  conditional E-value: 4.5e-155
   TIGR01520   4 klktgvilgedvaklfevakeekfaiPainvvssetvnaaleaardakspiilqfsnggaafiaGkGvkdeaekaasiaGaiaaaeyvrsiaekygvpvvlhtdhCakkllpyvdglleadekyfkkegkPlfsshmldlseepieenieiakkylkrmakiklileieiGitGGeedGvdneeadkeelytkPedvekvyeelsk.ispkfsiaaafGnvhGvykpGnvklrPdiladgqeyvaeklglkeakplsfvfhGGsGstkeeikealsyGvvkvnvdtdtqyaalegildyvlknedylqsqvGnpkgeekpnkkvydPrvwlreaeksmkarv 344
                 ++k+gv+ g+ + +l++ ake+k+aiPa+nvvss ++ a leaa++ + pii+qfs+gg +fiaGk  k++++ a  iaG++a+a +vr++ae ygvpv+lhtdhC +  lp++dgl+ea+ek+f+ +g+Plfsshmldlseep+eeni+++k+yl+rmak + +le+e+G+tGGeedGvdn ++d++ lyt+Pe+v++vy++ls+ + + f+iaaafGnvhGvy+pGnv lrPdil+++q+ vaeklg ++  p  fvfhGGsGs++e+i+ a++ G +k+n+dtdtq+a++ gi++y  k +dylq q+Gnp+ge kpnkk+ydPr+ lr +e+ m++r+
  MMETSP1137-20121227|7348_1  39 TVKPGVVSGQALVDLLQHAKENKYAIPAVNVVSSCSITACLEAAAKYGGPIIVQFSRGGGQFIAGKKAKNDNDAA-CIAGTVAGALHVRQVAELYGVPVILHTDHCMRSWLPWFDGLMEANEKHFELHGEPLFSSHMLDLSEEPLEENIATCKEYLERMAKFNCLLEMELGVTGGEEDGVDNTDVDSSRLYTQPEEVWEVYKALSEvEGGAFTIAAAFGNVHGVYAPGNVDLRPDILHNTQKXVAEKLGGDDPLPCLFVFHGGSGSSVEDIRYAIDAGTIKMNIDTDTQWAFWDGIRQYEAKYHDYLQAQIGNPEGETKPNKKYYDPRMALRSGEEVMRDRL 379
                 689*******************************************************************76655.*********************************************************************************************************************************945679*********************************************************************************************************************************97 PP

>> TIGR00167  cbbA: ketose-bisphosphate aldolases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  315.1   0.0   1.1e-97   9.2e-95       5     277 ..      49     379 ..      45     380 .] 0.97

  Alignments for each domain:
  == domain 1    score: 315.1 bits;  conditional E-value: 1.1e-97
   TIGR00167   5 dvkellekakeegyaipaiNvvnlesikavleaaeeaksPviiqasegaakyiaG............leaiaalvkalveaekytvPvvlHlDHga.............seesiaeavkagfsSvMiDaSeepfeeNieltkkvvelahkvgvsvEaElGilggeedgvdnskadesalytdpe....eakelvkks.qvdalAaaiGnvHGvYkkepkkLkferleeiqklvs..........lplVlHGgsgipeeeikkaiklGvvKvNidTdlqlAfaeavreylkenkde..................ydprkylkeaekamkevv 277
                  +  ll++ake++yaipa+Nvv++ si+a leaa++   P+i+q+s+g+ ++iaG             +++a++ ++++ ae y+vPv+lH+DH+              +e++++ +++++fsS+M+D+Seep+eeNi+++k+++e+++k+++ +E+ElG++ggeedgvdn ++d+s+lyt+pe    ++k+l+++  + +++Aaa+GnvHGvY+++++ L++++l+++qk v             +V+HGgsg++ e+i+ ai+ G++K+NidTd+q+Af++++r+y ++ +d+                  ydpr  l+++e+ m++++
  MMETSP1137-20121227|7348_1  49 ALVDLLQHAKENKYAIPAVNVVSSCSITACLEAAAKYGGPIIVQFSRGGGQFIAGkkakndndaaciAGTVAGALHVRQVAELYGVPVILHTDHCMrswlpwfdglmeaNEKHFELHGEPLFSSHMLDLSEEPLEENIATCKEYLERMAKFNCLLEMELGVTGGEEDGVDNTDVDSSRLYTQPEevweVYKALSEVEgGAFTIAAAFGNVHGVYAPGNVDLRPDILHNTQKXVAeklggddplpCLFVFHGGSGSSVEDIRYAIDAGTIKMNIDTDTQWAFWDGIRQYEAKYHDYlqaqignpegetkpnkkyYDPRMALRSGEEVMRDRL 379
                 56689***********************************************************************************************************************************************************************************8888899999876369******************************************9999*********************************************************************************9986 PP

>> TIGR01859  fruc_bis_ald_: fructose-1,6-bisphosphate aldolase, class II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  140.0   0.0   3.3e-44   2.7e-41       6     267 ..      52     377 ..      47     380 .] 0.80

  Alignments for each domain:
  == domain 1    score: 140.0 bits;  conditional E-value: 3.3e-44
   TIGR01859   6 ellekakkekYavgafninnlellqaileaaeeeksPvivqvsegavkYlg..............gikvvvalvkalieklsivPvalhLDhGss.....yescikaikaG........fssvmiDashlpleenlketkkvveiahakgvsveaelGklgGieddvvekeae....ladideakklvk.....etgvDaLaiaiGtshGkyk.ge....pkldferlkeikkll....nlP..lvlhGasGipeeqlkkaiklgiakvnidtdlrlaftaairkvle..................ekkdeydpRkilaparealke 267
                 +ll++ak++kYa++a+n+     + a leaa +   P+ivq s g  ++++              g+ + +  v++++e +  vPv+lh Dh        ++  ++a ++         fss m+D s+ pleen+++ k+ +e   + +   e+elG+ gG+ed+v++ ++     +++++e+ ++ k     e g  ++a+a G++hG y  g+    p++  ++ k + ++l    +lP  +v hG+sG + e+++ ai+ g+ k+nidtd++ af + ir++ +                   +k+ ydpR  l  ++e +++
  MMETSP1137-20121227|7348_1  52 DLLQHAKENKYAIPAVNVVSSCSITACLEAAAKYGGPIIVQFSRGGGQFIAgkkakndndaaciaGTVAGALHVRQVAELYG-VPVILHTDHCMRswlpwFDGLMEANEKHfelhgeplFSSHMLDLSEEPLEENIATCKEYLERMAKFNCLLEMELGVTGGEEDGVDNTDVDssrlYTQPEEVWEVYKalsevEGGAFTIAAAFGNVHGVYApGNvdlrPDILHNTQKXVAEKLggddPLPclFVFHGGSGSSVEDIRYAIDAGTIKMNIDTDTQWAFWDGIRQYEAkyhdylqaqignpegetkPNKKYYDPRMALRSGEEVMRD 377
                 89***********************************************997888888876664333333344677777777.*********9644455578888887654222225558**********************************************9887653223399****988877222222345689*********885156445544444444555555433222454359***************************************988899************99877889*********9999876 PP

>> TIGR01858  tag_bisphos_ald: class II aldolase, tagatose bisphosphate family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.4   0.1   3.6e-27     3e-24       6     247 ..      52     339 ..      44     379 .. 0.72

  Alignments for each domain:
  == domain 1    score: 83.4 bits;  conditional E-value: 3.6e-27
   TIGR01858   6 ellkeaqkgGyavpafnihnletlqvvvetaaelkspvilaGtpgtfkyag.....tee.......lva..l.vsaaakkyelplalhldhhes.....lddi....kqkv....aaGvksvmidashlsfeenvklvkevvdfchrfdasveaelGrlgGveddlsvde..edalytdpdeakefvea.....tGvdslavaiGtahGlykea.pkldfdrlakirekv......dvpl....vlhGasdvpdelvrrtielGiskvnvatelkiafsdalkayfie 247
                 +ll++a+++ ya+pa n+    ++ + +e+aa+   p+i+  + g  ++++      ++        va  l v+++a+ y +p+ lh dh        +d +    +++     +  + s m+d s  ++een++  ke ++   +f++ +e elG  gG ed +   +  ++ lyt+p+e  e  +a      G  ++a a G  hG+y+     l  d l + ++ v      d pl    v+hG+s+ + e++r +i+ G  k+n+ t+ + af d +++y ++
  MMETSP1137-20121227|7348_1  52 DLLQHAKENKYAIPAVNVVSSCSITACLEAAAKYGGPIIVQFSRGGGQFIAgkkakNDNdaaciagTVAgaLhVRQVAELYGVPVILHTDHCMRswlpwFDGLmeanEKHFelhgEPLFSSHMLDLSEEPLEENIATCKEYLERMAKFNCLLEMELGVTGGEEDGVDNTDvdSSRLYTQPEEVWEVYKAlseveGGAFTIAAAFGNVHGVYAPGnVDLRPDILHNTQKXVaeklggDDPLpclfVFHGGSGSSVEDIRYAIDAGTIKMNIDTDTQWAFWDGIRQYEAK 339
                 79*************************************97666655554411111222212111111122236789999***********65422222333211112222111134589********************************************886544114569*****9988765422222467789999********85413455566666666652222333343334599************************************999654 PP

>> TIGR01521  FruBisAldo_II_B: fructose-bisphosphate aldolase, class II, Calvin cycle subtype
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.5   0.1     1e-10   8.6e-08       4      55 ..      50     101 ..      48     147 .. 0.71
   2 !   13.1   0.0     1e-05    0.0082     141     199 ..     199     262 ..     193     273 .. 0.75
   3 !   10.9   0.0   4.5e-05     0.037     255     292 ..     302     339 ..     296     347 .. 0.89

  Alignments for each domain:
  == domain 1    score: 29.5 bits;  conditional E-value: 1e-10
   TIGR01521   4 lrqlldhaaergygvpafnvnnleqilaimeaadktdspvilqasrgarsya 55 
                 l  ll+ha e+ y +pa nv     i a +eaa k   p+i+q srg  ++ 
  MMETSP1137-20121227|7348_1  50 LVDLLQHAKENKYAIPAVNVVSSCSITACLEAAAKYGGPIIVQFSRGGGQFI 101
                 5679******************************************976653 PP

  == domain 2    score: 13.1 bits;  conditional E-value: 1e-05
   TIGR01521 141 lgclgsletgk.geaedghgfegaldrsqlltdpeeaaefvkk.tkvd....alavaigtshgay 199
                 + cl  +e g  g++edg+  +  +d s+l t+pee  e  k  ++v+    ++a a g  hg y
  MMETSP1137-20121227|7348_1 199 FNCLLEMELGVtGGEEDGVD-NTDVDSSRLYTQPEEVWEVYKAlSEVEggafTIAAAFGNVHGVY 262
                 6799999*996267888886.5789***********99876532455522114566788889988 PP

  == domain 3    score: 10.9 bits;  conditional E-value: 4.5e-05
   TIGR01521 255 gvpveeivkgikfgvrkvnidtdlrlaataalrrvaak 292
                 g  ve+i   i  g  k+nidtd + a    +r+  ak
  MMETSP1137-20121227|7348_1 302 GSSVEDIRYAIDAGTIKMNIDTDTQWAFWDGIRQYEAK 339
                 789*************************9999998776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (380 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       119  (0.0290102); expected 82.0 (0.02)
Passed bias filter:                      113  (0.0275475); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.37u 0.18s 00:00:00.55 Elapsed: 00:00:00.35
# Mc/sec: 1433.02
//
Query:       MMETSP1137-20121227|7349_1  [L=1706]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0025   15.6   2.7     0.0082   13.9   1.8    1.8  1  TIGR03296 M6dom_TIGR03296: M6 family metalloprotease domain


Domain annotation for each model (and alignments):
>> TIGR03296  M6dom_TIGR03296: M6 family metalloprotease domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   1.8     2e-06    0.0082     144     239 ..     268     349 ..     140     373 .. 0.69

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 2e-06
   TIGR03296 144 idgttigskklvgdytiqpedagvgVlaHElGHdlglPDlYdtsydgggetpvGdWslMssGswagkgstppdmkawlkeklgWlneqsvatkrgk 239
                  +++ +++      y+ +   +   V aHE+GH+lgl++  +++++ g++++v  +   s+ sw         ++a ++ +lgWl  + va+++  
  MMETSP1137-20121227|7349_1 268 HPNAAVRN---GVCYSYIRTTL-QMVRAHEFGHNLGLGHSGQYTDEYGDSSAVMGY---SRPSWL-------VFNAAHRFQLGWLAANDVADASYV 349
                 45555555...22344444444.5699************98874444433333333...455666.......799***********9999887655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1706 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       231  (0.056314); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.96u 0.20s 00:00:01.15 Elapsed: 00:00:00.64
# Mc/sec: 3518.33
//
Query:       MMETSP1137-20121227|7350_1  [L=77]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (77 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        37  (0.00901999); expected 82.0 (0.02)
Passed bias filter:                       35  (0.00853242); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.21s 00:00:00.31 Elapsed: 00:00:00.34
# Mc/sec: 298.92
//
Query:       MMETSP1137-20121227|7351_1  [L=395]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   1.4e-102  341.2   0.0   1.8e-102  340.8   0.0    1.0  1  TIGR00669 asnA: aspartate--ammonia ligase


Domain annotation for each model (and alignments):
>> TIGR00669  asnA: aspartate--ammonia ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  340.8   0.0  4.4e-106  1.8e-102       8     321 ..      62     377 ..      57     382 .. 0.96

  Alignments for each domain:
  == domain 1    score: 340.8 bits;  conditional E-value: 4.4e-106
   TIGR00669   8 kqqeisfvkstftqklierlglievqgpilsqvgdgiqdnlsgiekavqvkvkaipdaafevvhslakwkrhtlarydfkedeglfvhmkalrpdedsldpvrsvyvdqwdwekvvpegernlaylketveaiyaairatevavserfglaallpkqivfvhseelvkrypdldskgredaiakelgavfligiggklsdgk..phdvrapdyddwtteselgykglngdilvwnpvlgkafelssmgirvdedalrlqlaltgdedrlelewhqdllngklpqtigggigqsrlamlllqkkhigevqasvw.pke 321
                 k++ +  vk+tf ++l++++ l  v +p++     g +dnl g+e+      + + d ++ev  slakwkr +l  y+f +++gl + m+ lr d+d +d ++s+yvdqwdwek ++  +rn+ yl+ tv+ iy+a+  te  v ++fg+++llp++i+f  s+e++k ypdl  k+re+ ++ e+gavfl+gigg   dg   +hd+rapdyddwtte   g  glngd+lvwnp+l+ +felssmgirv  + l +ql +    +r ++ wh+  l+g +pqtigggigqsrl+  +l+  higevq + + pke
  MMETSP1137-20121227|7351_1  62 KEEALLTVKTTFEEQLKKNINLQRVSAPLFLTKDSGFNDNLNGVERPATFAPRDFQDIKLEVPFSLAKWKRWALHYYKFPAGKGLVTDMRGLRCDDD-VDFTHSLYVDQWDWEKAIGPDDRNMEYLQTTVKGIYKAVYDTEQEVAKKFGITPLLPEEIKFFSSDEMLKEYPDLTPKERENVLCEEHGAVFLMGIGGXKXDGVtlRHDGRAPDYDDWTTERPDGGFGLNGDLLVWNPILKCSFELSSMGIRVSPEVLLKQLDIMKVPERKDFVWHKMCLDGTIPQTIGGGIGQSRLCQYMLRCAHIGEVQHGWYdPKE 377
                 56667789**************************************************************************************987.79****************************************************************************************************96448********************************************************************************************************98664555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (395 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        85  (0.0207216); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.17u 0.27s 00:00:00.44 Elapsed: 00:00:00.40
# Mc/sec: 1303.39
//
Query:       MMETSP1137-20121227|7352_1  [L=189]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (189 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       149  (0.0363237); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.17s 00:00:00.35 Elapsed: 00:00:00.25
# Mc/sec: 997.84
//
Query:       MMETSP1137-20121227|7353_1  [L=484]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (484 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       179  (0.0436373); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.18s 00:00:00.50 Elapsed: 00:00:00.39
# Mc/sec: 1638.02
//
Query:       MMETSP1137-20121227|7355_1  [L=373]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0082   14.3   0.7        2.7    6.3   0.0    3.2  3  TIGR01557 myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class


Domain annotation for each model (and alignments):
>> TIGR01557  myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.0      0.04   1.7e+02       3      34 ..     208     235 ..     206     244 .. 0.81
   2 !    3.7   0.1     0.004        17       3      35 ..     291     319 ..     289     330 .. 0.88
   3 !    6.3   0.0   0.00065       2.7       5      26 ..     347     367 ..     344     370 .. 0.90

  Alignments for each domain:
  == domain 1    score: 0.5 bits;  conditional E-value: 0.04
   TIGR01557   3 rvvWteelhrrFlqAvqklGgedkatPkkIle 34 
                 r+ W ++++ +   +v   G  ++    kI++
  MMETSP1137-20121227|7355_1 208 RLNWRPDEDAVICAVVAAHGN-QW---AKIAA 235
                 899*******99999999999.99...56655 PP

  == domain 2    score: 3.7 bits;  conditional E-value: 0.004
   TIGR01557   3 rvvWteelhrrFlqAvqklGgedkatPkkIlel 35 
                 r++W  +++r   + + + G+ d+   +kI+++
  MMETSP1137-20121227|7355_1 291 RIKWRADEDRLIFDIIAQKGR-DW---RKIAQM 319
                 899******************.**...999765 PP

  == domain 3    score: 6.3 bits;  conditional E-value: 0.00065
   TIGR01557   5 vWteelhrrFlqAvqklGgedk 26 
                 +Wt+ +++  +  vq+lG+  +
  MMETSP1137-20121227|7355_1 347 CWTSAEDQLIMASVQELGK-MW 367
                 8*****************9.65 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (373 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        59  (0.0143832); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.27u 0.14s 00:00:00.41 Elapsed: 00:00:00.36
# Mc/sec: 1367.55
//
Query:       MMETSP1137-20121227|7356_1  [L=883]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   6.9e-280  927.3  13.0   2.3e-238  790.2   7.8    2.0  2  TIGR02350 prok_dnaK: chaperone protein DnaK
     3e-198  657.9   6.3   7.9e-179  593.8   4.0    2.0  2  TIGR01991 HscA: Fe-S protein assembly chaperone HscA
    1.1e-14   52.0   2.3    4.3e-14   50.1   0.1    2.6  3  TIGR00904 mreB: cell shape determining protein, MreB/Mrl family
    1.9e-10   38.5   3.3    1.2e-08   32.5   0.2    3.0  3  TIGR02529 EutJ: ethanolamine utilization protein EutJ family protein
    2.9e-05   21.2   6.0        0.1    9.5   0.0    4.0  4  TIGR01174 ftsA: cell division protein FtsA
    0.00031   17.2   0.0    0.00077   15.9   0.0    1.6  1  TIGR01312 XylB: xylulokinase
  ------ inclusion threshold ------
       0.25    5.8  11.7       0.33    5.4   8.1    1.0  1  TIGR01612 235kDa-fam: rhoptry protein


Domain annotation for each model (and alignments):
>> TIGR02350  prok_dnaK: chaperone protein DnaK
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  137.1   0.0   2.4e-43   1.4e-40       2     130 ..      47     175 ..      46     179 .. 0.96
   2 !  790.2   7.8    4e-241  2.3e-238       2     595 ..     252     858 ..     251     859 .. 0.95

  Alignments for each domain:
  == domain 1    score: 137.1 bits;  conditional E-value: 2.4e-43
   TIGR02350   2 iiGidLGttnsvvavleggepvvianaeGarttPsvvafkkdgerlvGelakrqavtnpentivsikrliGrkle..eveeeakkvpykvveaen.evkvevedkeytpeeisaeiLqklkkdaeaylGekv 130
                 +iGidLGttn    v  gg + vi+naeG+rttPsv+af++dg+rlvG +akrqavtnp  t+++ krliGr+++  +v+++ k+vpy++v+a+n +++++ve+k+y+p + +a+iL k+k++ae +lG  +
  MMETSP1137-20121227|7356_1  47 VIGIDLGTTNY---VDGGGLAAVIENAEGSRTTPSVIAFTSDGQRLVGAAAKRQAVTNPSGTLFATKRLIGRRFDdpHVQKDLKTVPYQIVRADNgDAWISVEGKTYSPSQAGAFILGKMKETAESHLGAAL 175
                 8*********7...56799*******************************************************97789****************9*********************************876 PP

  == domain 2    score: 790.2 bits;  conditional E-value: 4e-241
   TIGR02350   2 iiGidLGttnsvvavleggepvvianaeGarttPsvvafkkdgerlvGelakrqavtnpentivsikrliGrkle..eveeeakkvpykvveaen..evkveve..dkeytpeeisaeiLqklkkdaeaylGekvteavitvPayfndaqrqatkdaGkiaGlevlriinePtaaaLayGldkekkdekilvfdlGGGtfdvsilelgdgvfevkstaGdtkLGGddfdekiidylaeefkkeegidLskdkmalqrlkeaaekakieLssaleteinlpfitadasgpkhlelkltrakfeelvedlvertkepvkkalkdaklsaseidevilvGGstriPavqelvkelvg.kepnksvnPdevvaiGaaiqggvlkge....vkdvlLldvtPLsLgietlGgvltkliernttiPtkksqvfstaednqpaveihvlqGerelaadnkslgrfeLtgippaPrGvpqievtfdidanGilsvsakdkatgkeqsitita.ssglseeeiermvkeaeanaeedkkkkeevearneadsliyqaektlkeag....dkleeeekekiekaveelkealkeedveek..ikakteelekaleklaealy 595
                 ++GidLGtt s+v v + g+ ++ian +G+r tPs+vaf+++ erlvG++ak+qa +np nt++ +krliGr+++   v++++k  p+++v+++    ++vev+  +k++tpeeisa++L ++k++ae++l ++v++av+tvPayfndaqrqatkdaG+iaGl+v+riinePtaaa+ayGldk++ +++ilvfdlGGGtfdvs+l +++gvfev +t+Gdt+LGG+dfd+++i++l++ fk+++g d skdk a+q+l+ + e+ak  Ls+++++++++  +       ++++++ltra+feel+ dl+++t +pv+k++ d++l++seidev+lvGGstriP+vq+l+k++++ kepnk++nPde+va Gaa+qgg+l+ge     kd+lLldvtPL+Lgiet+Ggv+tkli rnt iPtkksqvfst +dnqpav i+v+ Ger +++d + lg+feL gippaPrGvpqiev+f+idanGil+v a+dk+tgk+++itit+ ++ ls++eiermv+ea +++eedkk +e++e rn +++++y++++tl++++    dk+++++ke ieka+ee++e l++++ +ek   ++k +e++++++ + +++y
  MMETSP1137-20121227|7356_1 252 VVGIDLGTTYSCVGVYKNGRVEIIANDQGNRVTPSYVAFSDN-ERLVGDAAKNQASLNPSNTVYDAKRLIGRRFTdaAVQHDMKLWPFDIVNVDGkpIIQVEVNgaKKKFTPEEISAMVLGRMKETAEEFLSKEVKNAVVTVPAYFNDAQRQATKDAGTIAGLNVMRIINEPTAAAIAYGLDKKSGEKNILVFDLGGGTFDVSLLTIDNGVFEVIATSGDTHLGGEDFDNRVIQHLLKVFKRKHGSDPSKDKRAIQKLRREVERAKRSLSTQHQVRVEIEGLY----DGVDFSETLTRARFEELCIDLFKKTLTPVSKVMDDSELKKSEIDEVVLVGGSTRIPKVQQLLKDFFNgKEPNKGINPDEAVAYGAAVQGGILSGEggeeTKDILLLDVTPLTLGIETVGGVMTKLIPRNTVIPTKKSQVFSTYQDNQPAVMIQVFEGERTMTKDCHLLGKFELGGIPPAPRGVPQIEVSFEIDANGILNVGAEDKGTGKNEKITITNdKGRLSQDEIERMVQEAAEFEEEDKKVREKIESRNALENYVYSMKNTLSDSEkgvaDKISDDDKETIEKALEEANEWLDDNQDAEKedFEEKLKEVQEVCSPIISKVY 858
                 8****************************************9.******************************996678999**********9985534555543379*************************************************************************************************************************************************************************988654....457899**********************************************************9966*************************9877789*******************************************************************************************************************972578********************************************9875333378999***************99876543322599999999999988888776 PP

>> TIGR01991  HscA: Fe-S protein assembly chaperone HscA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.8   0.0     8e-21   4.7e-18       1     130 [.      47     175 ..      47     179 .. 0.93
   2 !  593.8   4.0  1.3e-181  7.9e-179       1     581 [.     252     854 ..     252     861 .. 0.91

  Alignments for each domain:
  == domain 1    score: 62.8 bits;  conditional E-value: 8e-21
   TIGR01991   1 avGiDlGttnslvaavregkaevlkdeegrvllpsvvryleegkvevGkeakeaaaedpkntiisvkRlmGrsled..vkkeaeelpyeledakgemvrlktaqgevtPvevsaeiLkklkkraeealgkel 130
                 ++GiDlGttn +      g a+v++++eg+ + psv+ ++++g+  vG++ak++a+++p+ t+ + kRl+Gr  +d  v+k  ++ py+++ a+++   ++++ ++ +P +  a iL k+k+ ae++lg +l
  MMETSP1137-20121227|7356_1  47 VIGIDLGTTNYVD---GGGLAAVIENAEGSRTTPSVIAFTSDGQRLVGAAAKRQAVTNPSGTLFATKRLIGRRFDDphVQKDLKTVPYQIVRADNGDAWISVEGKTYSPSQAGAFILGKMKETAESHLGAAL 175
                 59*******9643...568899**************************************************9998446788899*****************************************999876 PP

  == domain 2    score: 593.8 bits;  conditional E-value: 1.3e-181
   TIGR01991   1 avGiDlGttnslvaavregkaevlkdeegrvllpsvvryleegkvevGkeakeaaaedpkntiisvkRlmGrsled..vkkeaeelpyeledakge.mvrlktaqg..evtPvevsaeiLkklkkraeealgkelkgavitvPAYFddaqrqatkdAarlaglnvlRLlnePtaAAvAYGldk.aseglyavYDLGGGtFDvsiLklekGvFevlatgGdsaLGGDDfDralaklil....kkagleaelskeekkellkaaraakeaLtdaeevevevkl..egkdlkaklsreeleelieelvkktleivrralrdaglkveeikevvlvGGstrvplvrqavaelFk.kepltdldPdevvAlGAalqadlLaknkrke..dllLlDviPLsLGletmGGlvekiipRnttiPvakaqeFttykDgqtalaihvvqGeRelvedcrsLarFeLrgippmaAGaarirvtfqvDadGllsvsaqekltgveakievkpsyg.LsdeeiekmlkdslknaeeDmeaRalaekkveaerilealekalkadk....dLlseeelkaikaaleklekaleedda...eaikaaiealeeaskefa 581
                 +vGiDlGtt+s v + ++g++e++ +++g+ + ps v + ++ +  vG++ak++a  +p+nt+  +kRl+Gr  +d  v++ ++  p+++++ +g+  ++++++    + tP e+sa +L  +k+ aee l+ke+k+av+tvPAYF+daqrqatkdA+ +aglnv+R++nePtaAA+AYGldk + e+ ++v+DLGGGtFDvs+L +++GvFev+at+Gd++LGG+DfD+++ +++l    +k+g + + +k   ++l +++++ak+ L+++++v+ve++   +g d++ +l+r+++eel  +l kktl++v++++ d++lk++ei+evvlvGGstr+p+v+q ++++F+ kep + ++Pde vA GAa+q  +L+++  +e  d+lLlDv+PL LG+et+GG++ k+ipRnt iP++k+q F ty+D+q a++i+v  GeR + +dc+ L++FeL gipp + G+ +i+v f++Da+G+l+v a++k tg+++ki++ +  g Ls++eie+m++++ +  eeD+++R + e++   e+ + +++++l++ +    d +s +++++i++ale++++ l++++    e+ ++++++++e+ + ++
  MMETSP1137-20121227|7356_1 252 VVGIDLGTTYSCVGVYKNGRVEIIANDQGNRVTPSYVAFSDN-ERLVGDAAKNQASLNPSNTVYDAKRLIGRRFTDaaVQHDMKLWPFDIVNVDGKpIIQVEVNGAkkKFTPEEISAMVLGRMKETAEEFLSKEVKNAVVTVPAYFNDAQRQATKDAGTIAGLNVMRIINEPTAAAIAYGLDKkSGEKNILVFDLGGGTFDVSLLTIDNGVFEVIATSGDTHLGGEDFDNRVIQHLLkvfkRKHGSDPSKDKRAIQKLRREVERAKRSLSTQHQVRVEIEGlyDGVDFSETLTRARFEELCIDLFKKTLTPVSKVMDDSELKKSEIDEVVLVGGSTRIPKVQQLLKDFFNgKEPNKGINPDEAVAYGAAVQGGILSGEGGEEtkDILLLDVTPLTLGIETVGGVMTKLIPRNTVIPTKKSQVFSTYQDNQPAVMIQVFEGERTMTKDCHLLGKFELGGIPPAPRGVPQIEVSFEIDANGILNVGAEDKGTGKNEKITITNDKGrLSQDEIERMVQEAAEFEEEDKKVREKIESRNALENYVYSMKNTLSDSEkgvaDKISDDDKETIEKALEEANEWLDDNQDaekEDFEEKLKEVQEVCSPII 854
                 59***************************************9.99***************************877633677888899***99887623444444334389************************************************************************9566999********************************************999966645555557777888888899999**************9985579*****************************************************************6489**********************9765443349*****************************************************************************************************************987644********************************************8875222268999**************99987655011455666666666665555 PP

>> TIGR00904  mreB: cell shape determining protein, MreB/Mrl family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.0      0.16        93       5      24 ..      48      64 ..      44     103 .. 0.55
   2 ?   -1.1   0.0      0.28   1.6e+02       5      24 ..     253     272 ..     250     318 .. 0.65
   3 !   50.1   0.1   7.4e-17   4.3e-14     100     302 ..     387     597 ..     363     621 .. 0.78

  Alignments for each domain:
  == domain 1    score: -0.3 bits;  conditional E-value: 0.16
   TIGR00904  5 lgidlGtantlvyvkgkGiv 24
                +gidlGt+n   yv g G+ 
  MMETSP1137-20121227|7356_1 48 IGIDLGTTN---YVDGGGLA 64
                89*****99...66666652 PP

  == domain 2    score: -1.1 bits;  conditional E-value: 0.28
   TIGR00904   5 lgidlGtantlvyvkgkGiv 24 
                 +gidlGt+   v v ++G v
  MMETSP1137-20121227|7356_1 253 VGIDLGTTYSCVGVYKNGRV 272
                 89*****9999877666644 PP

  == domain 3    score: 50.1 bits;  conditional E-value: 7.4e-17
   TIGR00904 100 kvlicvPsgiteverravkesaksaGarevylieeplaaaiGadlPveeptgs.mvvdiGGGttevavisl.gG....ivvsksirvaGdeldeaiikyirrkynlliG......ertaekikieiGsayaeendeeeklevkGrdlvtGlprtleldskevlealkepvseiveavkstlektpPelaadiverGivltGGGallknldkllsk 302
                 + +++vP+   + +r+a k++ + aG + + +i+ep aaai  +l  +    + +v d+GGGt +v+++++ +G    i +s    ++G+++d+ +i+++ + ++   G      +r+ +k++ e+  a+ + +  ++++ v+ + l  G+  +++l+  +  e   +  ++    v +++++++    +  ++  +vl GG + +  +++ll++
  MMETSP1137-20121227|7356_1 387 NAVVTVPAYFNDAQRQATKDAGTIAGLNVMRIINEPTAAAIAYGLDKKSGEKNiLVFDLGGGTFDVSLLTIdNGvfevIATSGDTHLGGEDFDNRVIQHLLKVFKRKHGsdpskdKRAIQKLRREVERAKRSLS-TQHQVRVEIEGLYDGVDFSETLTRARFEELCIDLFKKTLTPVSKVMDDSEL--KKSEID-EVVLVGGSTRIPKVQQLLKD 597
                 379******************************************999887662678************98445222244566799**************9999988883322223556789999999998754.44455555555779****************************999998754..443344.38999999999999888876 PP

>> TIGR02529  EutJ: ethanolamine utilization protein EutJ family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.1      0.62   3.6e+02     109     136 ..     251     278 ..     242     286 .. 0.75
   2 !   32.5   0.2   2.1e-11   1.2e-08      44     143 ..     368     473 ..     355     479 .. 0.87
   3 !    4.9   0.0    0.0056       3.3     174     217 ..     558     598 ..     521     612 .. 0.74

  Alignments for each domain:
  == domain 1    score: -1.8 bits;  conditional E-value: 0.62
   TIGR02529 109 ngavvdvGGGttGisilkkGkviysade 136
                   + +d+G     + + k+G+v   a++
  MMETSP1137-20121227|7356_1 251 TVVGIDLGTTYSCVGVYKNGRVEIIAND 278
                 4445677777778999999999777754 PP

  == domain 2    score: 32.5 bits;  conditional E-value: 2.1e-11
   TIGR02529  44 eivkrlkdklekklGieltkaaiavPPGveegdkkvivnvvesaGlevlkvldePtaaaavlql......kngavvdvGGGttGisilkkGkviysadeatGGthl 143
                  ++ r+k+++e+ l  e+++a ++vP   ++ + +++ +    aGl+v+++++ePtaaa +  l      kn  v d+GGGt  +s+l   + ++    + G thl
  MMETSP1137-20121227|7356_1 368 MVLGRMKETAEEFLSKEVKNAVVTVPAYFNDAQRQATKDAGTIAGLNVMRIINEPTAAAIAYGLdkksgeKNILVFDLGGGTFDVSLLTIDNGVFEVIATSGDTHL 473
                 57889*****************************************************999887322222356799***********9988888887777777776 PP

  == domain 3    score: 4.9 bits;  conditional E-value: 0.0056
   TIGR02529 174 vvkPvvekmaeivkkhiekqkvkdlylvGGassfsefedvfeke 217
                 +++Pv + m +   + ++k++++++ lvGG++ +++++++++  
  MMETSP1137-20121227|7356_1 558 TLTPVSKVMDD---SELKKSEIDEVVLVGGSTRIPKVQQLLKDF 598
                 45666666654...679********************9998765 PP

>> TIGR01174  ftsA: cell division protein FtsA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.1     0.015       8.7     177     220 ..     231     274 ..     223     284 .. 0.86
   2 !    9.5   0.0   0.00018       0.1     167     217 ..     408     459 ..     349     479 .. 0.88
   3 !    8.9   0.0   0.00027      0.16     273     339 ..     535     600 ..     499     611 .. 0.78
   4 ?   -1.3   0.1      0.32   1.9e+02      85     118 ..     743     776 ..     723     792 .. 0.68

  Alignments for each domain:
  == domain 1    score: 3.1 bits;  conditional E-value: 0.015
   TIGR01174 177 ivlsslAsakavLtedEkelGvvlidiGggttdiavytegsiry 220
                  ++ +lA + a  +e Ek   vv id+G     + vy +g++ +
  MMETSP1137-20121227|7356_1 231 FCVLALAVVGAFAEEKEKVDTVVGIDLGTTYSCVGVYKNGRVEI 274
                 5677889999999999**************999*****999876 PP

  == domain 2    score: 9.5 bits;  conditional E-value: 0.00018
   TIGR01174 167 veraglevdnivlsslAsakav.LtedEkelGvvlidiGggttdiavytegs 217
                  + agl+v +i+ ++ A+a+a  L++   e  +++ d+Gggt d+++ t ++
  MMETSP1137-20121227|7356_1 408 GTIAGLNVMRIINEPTAAAIAYgLDKKSGEKNILVFDLGGGTFDVSLLTIDN 459
                 55689***************966999999999*************9987665 PP

  == domain 3    score: 8.9 bits;  conditional E-value: 0.00027
   TIGR01174 273 gereerelskkelaeiieaRveEileivkqkelkksglkeelaagivltGGaaqlkgikelaekvfd 339
                 g + +++l++++  e      + +l+ v+ k +++s+lk++ +  +vl GG +++  +++l ++ f+
  MMETSP1137-20121227|7356_1 535 GVDFSETLTRARFEELCIDLFKKTLTPVS-KVMDDSELKKSEIDEVVLVGGSTRIPKVQQLLKDFFN 600
                 46777888888888888888889999997.999999995555566******************9997 PP

  == domain 4    score: -1.3 bits;  conditional E-value: 0.32
   TIGR01174  85 skgvvaikdk.evtqediervleaakavalpedke 118
                 ++ +  ++dk  + q++ier++++a     +edk+
  MMETSP1137-20121227|7356_1 743 NEKITITNDKgRLSQDEIERMVQEAAEF-EEEDKK 776
                 33344445556999*******9999654.455555 PP

>> TIGR01312  XylB: xylulokinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   1.3e-06   0.00077     385     440 ..     570     627 ..     522     639 .. 0.72

  Alignments for each domain:
  == domain 1    score: 15.9 bits;  conditional E-value: 1.3e-06
   TIGR01312 385 elkglkikeirliGGGaksevwrqiladilglev..vvpeeeegaalGaAilAaialg 440
                 elk  +i+e++l+GG ++ + ++q+l d ++ +   +  + +e++a+GaA+++ i +g
  MMETSP1137-20121227|7356_1 570 ELKKSEIDEVVLVGGSTRIPKVQQLLKDFFNGKEpnKGINPDEAVAYGAAVQGGILSG 627
                 34567899**********************97651145569***********988766 PP

>> TIGR01612  235kDa-fam: rhoptry protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   8.1   0.00057      0.33    1110    1200 ..     758     848 ..     737     855 .. 0.73

  Alignments for each domain:
  == domain 1    score: 5.4 bits;  conditional E-value: 0.00057
   TIGR01612 1110 devnkikddiktldqkvdknikeleeikkksenyvdeikaqisdledvadkaisnedvkeiekkienivtkidkkkyi.yeeikkllseiak 1200
                  de++++ ++  + ++  dk+++e  e ++  enyv  +k  +sd e+     is++d + iek  e+    +d  +    e+++  l+e+ +
  MMETSP1137-20121227|7356_1  758 DEIERMVQEAAEFEE-EDKKVREKIESRNALENYVYSMKNTLSDSEKGVADKISDDDKETIEKALEEANEWLDDNQDAeKEDFEEKLKEVQE 848 
                  344444444444433.4999**************************988788************9998888876654414566666666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (883 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       280  (0.0682594); expected 82.0 (0.02)
Passed bias filter:                       96  (0.0234032); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.74u 0.19s 00:00:00.93 Elapsed: 00:00:00.57
# Mc/sec: 2009.42
//
Query:       MMETSP1137-20121227|7357_1  [L=230]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (230 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        55  (0.0134081); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.18s 00:00:00.37 Elapsed: 00:00:00.50
# Mc/sec: 607.15
//
Query:       MMETSP1137-20121227|7358_1  [L=904]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (904 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       474  (0.115553); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.68u 0.18s 00:00:00.86 Elapsed: 00:00:00.67
# Mc/sec: 1780.87
//
Query:       MMETSP1137-20121227|7360_1  [L=90]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (90 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        32  (0.00780107); expected 82.0 (0.02)
Passed bias filter:                       32  (0.00780107); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.28
# Mc/sec: 409.62
//
Query:       MMETSP1137-20121227|7361_1  [L=350]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   1.1e-127  423.6   0.0   1.3e-127  423.4   0.0    1.0  1  TIGR01534 GAPDH-I: glyceraldehyde-3-phosphate dehydrogenase, type I
    4.7e-76  254.0   0.0    5.5e-76  253.7   0.0    1.0  1  TIGR01532 E4PD_g-proteo: erythrose-4-phosphate dehydrogenase
     0.0072   13.3   0.0      0.013   12.4   0.0    1.4  1  TIGR01296 asd_B: aspartate-semialdehyde dehydrogenase


Domain annotation for each model (and alignments):
>> TIGR01534  GAPDH-I: glyceraldehyde-3-phosphate dehydrogenase, type I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  423.4   0.0  9.2e-131  1.3e-127       1     329 [.      16     339 ..      16     340 .. 0.97

  Alignments for each domain:
  == domain 1    score: 423.4 bits;  conditional E-value: 9.2e-131
   TIGR01534   1 kvginGfGRiGrlvlrallekkskdlevvaindl.tdleklayllkyDsvhGrfeeevtvsekk.allvngkkvivlaserdpkdlpwkelgvdlvlectGafldkekalekhleagakkVllsaPskdeaaitlVygvNeeeldeseekiiSaASCTTnclapllkvleeefgiksglmtTvHayTadQkllDavhakdlrraRaaaeniiptstgaakavakvlpelagkltgeavRvPtpdvSlvdlvlnlekevtkeevnaalkeaseg..lkgvlgysedelVSsDiigspkssivdakatkvtelkeklvkvvaWYDNElgysnrlv 329
                 k+gi+GfGRiGrlv+ra+++k++    vva+nd   d++++ayl+kyDs+hG +++ev+++e++ +l+v+g++ +++a  r+p+++pw e+g+d+v e+tG+f++ eka ++hl+ gakkV++saPs+d  a+++V+ vN++ + + + +i+S+ASCTTnclapl+k+++ee+gi++glmtTvHa+Ta+Qk++D+++ kd+r +R a +niip+stgaakav+kvlp l+gkltg+a+RvPtpdvS+vdl+ +l+ke+t+ee++a +k+ se+  +kgv+gy++d +VS+D+ g+++ssi+da a ++  l++++vk+v+WYDNE+gysnrlv
  MMETSP1137-20121227|7361_1  16 KMGISGFGRIGRLVARAACQKEG--ATVVAVNDPfCDVKYAAYLFKYDSTHGIYKGEVSADEANsTLTVDGTPIKFYA-CRNPEEVPWGESGADIVCESTGIFTTIEKA-SAHLKGGAKKVIISAPSAD--APMFVMSVNHTAYTK-DINILSNASCTTNCLAPLAKIIHEEYGIVEGLMTTVHATTATQKTVDGPSGKDWRGGRGAGQNIIPASTGAAKAVGKVLPALNGKLTGMAFRVPTPDVSVVDLTAKLAKETTYEEIKACIKAKSESpeYKGVMGYTDDCVVSTDFQGDSRSSIFDAGAGIM--LTSTFVKLVSWYDNEWGYSNRLV 339
                 689******************66..999**********************************999******7666555.8************************77775.*****************98..99***********96.9****************************************************************************************************************************9***********************************..5568*****************98 PP

>> TIGR01532  E4PD_g-proteo: erythrose-4-phosphate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  253.7   0.0     4e-79   5.5e-76       2     324 ..      17     339 ..      16     340 .. 0.95

  Alignments for each domain:
  == domain 1    score: 253.7 bits;  conditional E-value: 4e-79
   TIGR01532   2 vaingfgrigrnvlralyesgkraeievvalne.ladaaavayllkydtshgrfakevkvdr..dqlyvnddairvlreselealdwrelgvdlvldctgvygsredgerfiaagakkvlfshpgaadldativygvnqedlsaeekivsnascttncivplikllddaigiesgtittihsamndqqvidayhn.dlrrtraasqsiipvdtklakgierllpkladrleaiavrvptvnvtaldlsvtvkkdvkanevnrvlreaaes.alrgivdytelplvsvdfnhdphsaivdgtqtrvsgarlvkllvwcdnewgfanrml 324
                 + i gfgrigr v ra     ++++ +vva+n+ + d +  ayl kyd++hg + +ev+ d+   +l v++  i+    +++e ++w e g d+v + tg++++ e++ ++++ gakkv++s p+a       v  vn+   + + +i+snascttnc  pl k++++ +gi  g +tt+h++   q+ +d     d r  r a q iip +t+ ak + ++lp l+++l  +a rvpt +v+ +dl+ ++ k++  +e+   ++  +es  ++g++ yt+   vs df+ d  s+i d     + ++ +vkl+ w+dnewg++nr++
  MMETSP1137-20121227|7361_1  17 MGISGFGRIGRLVARAA---CQKEGATVVAVNDpFCDVKYAAYLFKYDSTHGIYKGEVSADEanSTLTVDGTPIKFYACRNPEEVPWGESGADIVCESTGIFTTIEKASAHLKGGAKKVIISAPSADA--PMFVMSVNHTAYTKDINILSNASCTTNCLAPLAKIIHEEYGIVEGLMTTVHATTATQKTVDGPSGkDWRGGRGAGQNIIPASTGAAKAVGKVLPALNGKLTGMAFRVPTPDVSVVDLTAKLAKETTYEEIKACIKAKSESpEYKGVMGYTDDCVVSTDFQGDSRSSIFDAGAGIMLTSTFVKLVSWYDNEWGYSNRLV 339
                 5699***********96...678999******967999*********************9972257999999****************************************************8742..46799********************************************************97655**************************************************************************88******************************************************86 PP

>> TIGR01296  asd_B: aspartate-semialdehyde dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.4   0.0   9.6e-06     0.013      99     156 ..     139     194 ..     119     203 .. 0.87

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 9.6e-06
   TIGR01296  99 edvPLvvpevnaeelkeakkkgiianPnCstiqlvvvLkplkdeaklkrvvvstYqav 156
                  d P+ v  vn+   ++    +i++n  C+t  l ++ k +++e+++++ ++ t  a 
  MMETSP1137-20121227|7361_1 139 ADAPMFVMSVNHTAYTKD--INILSNASCTTNCLAPLAKIIHEEYGIVEGLMTTVHAT 194
                 589********9877655..59*************************99888887775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (350 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        98  (0.0238908); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.29u 0.16s 00:00:00.44 Elapsed: 00:00:00.42
# Mc/sec: 1099.91
//
Query:       MMETSP1137-20121227|7362_1  [L=355]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        1.8    6.8   9.7       0.38    9.0   3.3    2.2  2  TIGR04104 cxxc_20_cxxc: cxxc_20_cxxc protein


Domain annotation for each model (and alignments):
>> TIGR04104  cxxc_20_cxxc: cxxc_20_cxxc protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.1      0.11   4.3e+02       2      16 ..      65      79 ..      64      90 .. 0.73
   2 ?    9.0   3.3   9.3e-05      0.38       3      43 ..     105     150 ..     103     170 .. 0.73

  Alignments for each domain:
  == domain 1    score: -0.8 bits;  conditional E-value: 0.11
   TIGR04104  2 kCknCkekfsykell 16
                +C+ C++ f+ +  l
  MMETSP1137-20121227|7362_1 65 TCTVCQKVFKREMNL 79
                799999999876555 PP

  == domain 2    score: 9.0 bits;  conditional E-value: 9.3e-05
   TIGR04104   3 CknCkekfsy.....kellkslfskkkkikCpnCgekqyltaksrk 43 
                 C++C++ f       k  l++ f+ ++++ C++Cg++  ++++ + 
  MMETSP1137-20121227|7362_1 105 CEECGKTFGTkyqakKHYLRKHFKGERPFGCEKCGKRFVVKEDHKL 150
                 9999998855111114456677777***********9999887764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (355 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        99  (0.0241346); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.28u 0.14s 00:00:00.42 Elapsed: 00:00:00.38
# Mc/sec: 1233.06
//
Query:       MMETSP1137-20121227|7363_1  [L=45]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (45 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        33  (0.00804486); expected 82.0 (0.02)
Passed bias filter:                       33  (0.00804486); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.17s 00:00:00.27 Elapsed: 00:00:00.40
# Mc/sec: 148.49
//
Query:       MMETSP1137-20121227|7364_1  [L=405]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (405 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       396  (0.0965383); expected 82.0 (0.02)
Passed bias filter:                      137  (0.0333983); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.18s 00:00:00.53 Elapsed: 00:00:00.44
# Mc/sec: 1214.90
//
Query:       MMETSP1137-20121227|7365_1  [L=307]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.1e-05   22.9   8.3     0.0084   13.5   0.2    4.1  4  TIGR01944 rnfB: electron transport complex, RnfABCDGE type, B subunit
    2.5e-05   22.1   0.0         17    3.4   0.0    6.6  8  TIGR01589 A_thal_3526: uncharacterized plant-specific domain TIGR01589
  ------ inclusion threshold ------
       0.03   11.9  13.1        4.1    5.1   0.0    6.9  6  TIGR02167 Liste_lipo_26: bacterial surface protein 26-residue repeat


Domain annotation for each model (and alignments):
>> TIGR01944  rnfB: electron transport complex, RnfABCDGE type, B subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.3   0.1    0.0042       5.7      53      92 ..      55      99 ..      37     108 .. 0.79
   2 !   13.5   0.2   6.2e-06    0.0084      47      93 ..     107     158 ..      96     165 .. 0.83
   3 !    5.4   0.1    0.0019       2.6      48      92 ..     166     215 ..     161     224 .. 0.79
   4 ?    2.8   0.0     0.012        17      47      91 ..     252     301 ..     240     306 .. 0.75

  Alignments for each domain:
  == domain 1    score: 4.3 bits;  conditional E-value: 0.0042
   TIGR01944 53 GypGCrpyaeaiaegea.....inkCpPGGeavieklaellgvek 92
                G +GC+ +ae +  ++      +  C   G+++ ++lae l+++ 
  MMETSP1137-20121227|7365_1 55 GNEGCKALAEGLKMNQTltsihLRSCFGIGDEGCKALAEGLKINX 99
                7789******99988762221235799999999999999998874 PP

  == domain 2    score: 13.5 bits;  conditional E-value: 6.2e-06
   TIGR01944  47 tqCgqCGypGCrpyaeaiaegea.....inkCpPGGeavieklaellgveke 93 
                 ++C   G +GC+ +ae +  ++a     + +C   G+++ ++lae+l+++++
  MMETSP1137-20121227|7365_1 107 SDCPSIGDEGCKALAEGLKINKAltsidLSRCHGLGDEGCKALAEVLKINPN 158
                 7899************998887643322359*****************9864 PP

  == domain 3    score: 5.4 bits;  conditional E-value: 0.0019
   TIGR01944  48 qCgqCGypGCrpyaeaiaegea...ink..CpPGGeavieklaellgvek 92 
                  C   G +GC+ + e +  +++   in   C   Ge++ ++lae l++++
  MMETSP1137-20121227|7365_1 166 GCRGIGDEGCKALTEGLKINQNlksINLsgCNSIGEEGWKALAESLKINQ 215
                 6888999********98876653355534499**************9984 PP

  == domain 4    score: 2.8 bits;  conditional E-value: 0.012
   TIGR01944  47 tqCgqCGypGCrpyaeaiaegea...i..nkCpPGGeavieklaellgve 91 
                 ++C +   +G + +ae++  ++a   i   +C   G+++ ++lae l+++
  MMETSP1137-20121227|7365_1 252 SRCNKISDKGWKALAESLKINQAlmsInlSRCRTIGNEGWKALAEGLKIN 301
                 67888888888999998887776433322599999999999999999887 PP

>> TIGR01589  A_thal_3526: uncharacterized plant-specific domain TIGR01589
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0      0.68   9.3e+02      20      37 ..      57      74 ..      56      75 .. 0.86
   2 ?    1.3   0.0     0.058        79      19      37 ..      85     103 ..      84     104 .. 0.91
   3 ?    1.3   0.0     0.055        75      19      37 ..     114     132 ..     113     133 .. 0.91
   4 ?    3.4   0.0     0.012        17      19      37 ..     143     161 ..     142     163 .. 0.92
   5 ?   -2.1   0.0      0.66     9e+02      19      35 ..     172     188 ..     172     191 .. 0.84
   6 ?    2.3   0.0     0.026        36      19      37 ..     201     219 ..     197     220 .. 0.92
   7 ?    1.9   0.0     0.035        48      19      37 ..     230     248 ..     229     256 .. 0.90
   8 ?   -0.3   0.0      0.17   2.3e+02      20      37 ..     289     306 ..     286     307 .] 0.87

  Alignments for each domain:
  == domain 1    score: -2.2 bits;  conditional E-value: 0.68
   TIGR01589 20 EtveallenakispklTk 37
                E  +al e  k+++ lT+
  MMETSP1137-20121227|7365_1 57 EGCKALAEGLKMNQTLTS 74
                7789999999****9997 PP

  == domain 2    score: 1.3 bits;  conditional E-value: 0.058
   TIGR01589  19 eEtveallenakispklTk 37 
                 +E  +al e  ki+  lT+
  MMETSP1137-20121227|7365_1  85 DEGCKALAEGLKINXTLTS 103
                 78999*************7 PP

  == domain 3    score: 1.3 bits;  conditional E-value: 0.055
   TIGR01589  19 eEtveallenakispklTk 37 
                 +E  +al e  ki++ lT+
  MMETSP1137-20121227|7365_1 114 DEGCKALAEGLKINKALTS 132
                 78999*************7 PP

  == domain 4    score: 3.4 bits;  conditional E-value: 0.012
   TIGR01589  19 eEtveallenakispklTk 37 
                 +E  +al e  ki+p+lT+
  MMETSP1137-20121227|7365_1 143 DEGCKALAEVLKINPNLTS 161
                 78999*************8 PP

  == domain 5    score: -2.1 bits;  conditional E-value: 0.66
   TIGR01589  19 eEtveallenakispkl 35 
                 +E  +al e  ki+++l
  MMETSP1137-20121227|7365_1 172 DEGCKALTEGLKINQNL 188
                 688999*******9887 PP

  == domain 6    score: 2.3 bits;  conditional E-value: 0.026
   TIGR01589  19 eEtveallenakispklTk 37 
                 eE  +al e  ki++ lT+
  MMETSP1137-20121227|7365_1 201 EEGWKALAESLKINQALTS 219
                 89999*************7 PP

  == domain 7    score: 1.9 bits;  conditional E-value: 0.035
   TIGR01589  19 eEtveallenakispklTk 37 
                 +E  +alle  ki++ lT+
  MMETSP1137-20121227|7365_1 230 DEGWNALLEGLKINQALTS 248
                 78899*************8 PP

  == domain 8    score: -0.3 bits;  conditional E-value: 0.17
   TIGR01589  20 EtveallenakispklTk 37 
                 E  +al e  ki++ lT+
  MMETSP1137-20121227|7365_1 289 EGWKALAEGLKINQALTS 306
                 6778999*********97 PP

>> TIGR02167  Liste_lipo_26: bacterial surface protein 26-residue repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.3     0.041        57       8      14 ..     101     107 ..      98     108 .. 0.89
   2 ?    5.1   0.0     0.003       4.1       5      14 ..     127     136 ..     127     137 .. 0.91
   3 ?   -0.4   0.0      0.16   2.2e+02       4      10 ..     174     180 ..     173     180 .. 0.87
   4 ?    2.5   0.1     0.021        28       5      15 ..     185     195 ..     185     195 .. 0.86
   5 ?    1.7   0.0     0.035        48       5      13 ..     214     222 ..     214     224 .. 0.84
   6 ?    2.8   0.0     0.016        22       5      14 ..     243     252 ..     243     253 .. 0.88

  Alignments for each domain:
  == domain 1    score: 1.5 bits;  conditional E-value: 0.041
   TIGR02167   8 LtsLDlS 14 
                 Lts+DlS
  MMETSP1137-20121227|7365_1 101 LTSIDLS 107
                 9*****9 PP

  == domain 2    score: 5.1 bits;  conditional E-value: 0.003
   TIGR02167   5 CssLtsLDlS 14 
                 +++Lts+DlS
  MMETSP1137-20121227|7365_1 127 NKALTSIDLS 136
                 689******9 PP

  == domain 3    score: -0.4 bits;  conditional E-value: 0.16
   TIGR02167   4 gCssLts 10 
                 gC++Lt+
  MMETSP1137-20121227|7365_1 174 GCKALTE 180
                 9****96 PP

  == domain 4    score: 2.5 bits;  conditional E-value: 0.021
   TIGR02167   5 CssLtsLDlSn 15 
                 + +L+s++lS+
  MMETSP1137-20121227|7365_1 185 NQNLKSINLSG 195
                 579******95 PP

  == domain 5    score: 1.7 bits;  conditional E-value: 0.035
   TIGR02167   5 CssLtsLDl 13 
                 + +Lts+Dl
  MMETSP1137-20121227|7365_1 214 NQALTSIDL 222
                 579*****9 PP

  == domain 6    score: 2.8 bits;  conditional E-value: 0.016
   TIGR02167   5 CssLtsLDlS 14 
                 + +Lts++lS
  MMETSP1137-20121227|7365_1 243 NQALTSINLS 252
                 579******9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (307 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        82  (0.0199902); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.27u 0.16s 00:00:00.43 Elapsed: 00:00:00.35
# Mc/sec: 1157.73
//
Query:       MMETSP1137-20121227|7366_1  [L=543]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (543 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       139  (0.0338859); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.16s 00:00:00.53 Elapsed: 00:00:00.74
# Mc/sec: 968.51
//
Query:       MMETSP1137-20121227|7367_1  [L=380]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (380 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        41  (0.00999512); expected 82.0 (0.02)
Passed bias filter:                       34  (0.00828864); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.13s 00:00:00.39 Elapsed: 00:00:00.31
# Mc/sec: 1617.93
//
Query:       MMETSP1137-20121227|7368_1  [L=398]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.3e-07   29.6   0.0    2.8e-07   28.6   0.0    1.6  1  TIGR02181 GRX_bact: glutaredoxin 3
    5.2e-06   24.5   0.0    8.6e-06   23.7   0.0    1.4  1  TIGR02180 GRX_euk: glutaredoxin
  ------ inclusion threshold ------
      0.025   12.4   0.0      0.038   11.8   0.0    1.3  1  TIGR02189 GlrX-like_plant: glutaredoxin-like family
      0.044   11.6   0.1       0.34    8.7   0.1    2.1  2  TIGR02190 GlrX-dom: glutaredoxin-family domain


Domain annotation for each model (and alignments):
>> TIGR02181  GRX_bact: glutaredoxin 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.6   0.0   2.7e-10   2.8e-07       8      80 .]      80     158 ..      74     158 .. 0.75

  Alignments for each domain:
  == domain 1    score: 28.6 bits;  conditional E-value: 2.7e-10
   TIGR02181   8 sCpycsrAkalLeekgv..efeeie..vdkdk.eareemierskgrrtvPQifigdvhv.GGcddLlaleregkLdkLL 80 
                  Cp+c++A alLe+ ++  +f+ ++  + +d+ ea + m + ++ + t+P i++  + + GG+++L +++++g+L  LL
  MMETSP1137-20121227|7368_1  80 ICPFCKMALALLEDLKArqSFRLHSedLFSDErEALRLMEQPAQVKLTFPVIYVRGRRLnGGYEELERMSKDGSLVVLL 158
                 7***********9766544444443114334415555578889999********887766**************98886 PP

>> TIGR02180  GRX_euk: glutaredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.7   0.0   8.4e-09   8.6e-06       3      81 ..      73     155 ..      71     158 .. 0.78

  Alignments for each domain:
  == domain 1    score: 23.7 bits;  conditional E-value: 8.4e-09
   TIGR02180   3 vfsKs..yCpYckkakelLkklkvkkalevveldklengselqdyLkeltg.qrtVPrifingkf.iGGsddlkklekkgkle 81 
                  f K+   Cp+ck+a +lL++lk ++++ +   d  +++ e   ++++ ++ + t P i+++g+   GG+++l+++ k+g l 
  MMETSP1137-20121227|7368_1  73 CFVKPggICPFCKMALALLEDLKARQSFRLHSEDLFSDEREALRLMEQPAQvKLTFPVIYVRGRRlNGGYEELERMSKDGSLV 155
                 56665337**************98888777777888777666666666655267*******997516************9986 PP

>> TIGR02189  GlrX-like_plant: glutaredoxin-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   3.7e-05     0.038      18      96 ..      81     163 ..      62     166 .. 0.64

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 3.7e-05
   TIGR02189  18 CClshvvkrLllelGvnPav..veldkeaeakeiekalle.lgskeavPvvfvGGk.lvGgleevmalhlsgsLvpllkkaga 96 
                 C ++ ++  Ll +l +  +   +  d  ++ +e  + + +    k + Pv++v G+ l Gg ee+  +  +gsLv ll+ +++
  MMETSP1137-20121227|7368_1  81 CPFCKMALALLEDLKARQSFrlHSEDLFSDEREALRLMEQpAQVKLTFPVIYVRGRrLNGGYEELERMSKDGSLVVLLRMTDS 163
                 666666666666666655431033333334444444444433467789*****886266******************998765 PP

>> TIGR02190  GlrX-dom: glutaredoxin-family domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   0.1   0.00033      0.34       9      30 ..      70      93 ..      63     103 .. 0.88
   2 ?   -0.2   0.0       0.2     2e+02      56      76 ..     126     147 ..     114     149 .. 0.84

  Alignments for each domain:
  == domain 1    score: 8.7 bits;  conditional E-value: 0.00033
   TIGR02190  9 svsvftkpG..CPfCakakavLke 30
                 v+ f kpG  CPfC  a a+L++
  MMETSP1137-20121227|7368_1 70 DVACFVKPGgiCPFCKMALALLED 93
                5899****999*******999976 PP

  == domain 2    score: -0.2 bits;  conditional E-value: 0.2
   TIGR02190  56 ttvPqvfinGkli.Ggsdelea 76 
                  t P +++ G+ + Gg +ele 
  MMETSP1137-20121227|7368_1 126 LTFPVIYVRGRRLnGGYEELER 147
                 68999***99754499999985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (398 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        88  (0.0214529); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.29u 0.15s 00:00:00.43 Elapsed: 00:00:00.53
# Mc/sec: 991.16
//
Query:       MMETSP1137-20121227|7369_1  [L=503]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (503 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       222  (0.0541199); expected 82.0 (0.02)
Passed bias filter:                      123  (0.0299854); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.16s 00:00:00.52 Elapsed: 00:00:00.37
# Mc/sec: 1794.34
//
Query:       MMETSP1137-20121227|7370_1  [L=94]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (94 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        55  (0.0134081); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.30
# Mc/sec: 413.57
//
Query:       MMETSP1137-20121227|7371_1  [L=237]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (237 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       202  (0.0492443); expected 82.0 (0.02)
Passed bias filter:                      120  (0.029254); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.13s 00:00:00.35 Elapsed: 00:00:00.35
# Mc/sec: 893.75
//
Query:       MMETSP1137-20121227|7372_1  [L=254]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (254 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        18  (0.0043881); expected 82.0 (0.02)
Passed bias filter:                       12  (0.0029254); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.14s 00:00:00.36 Elapsed: 00:00:00.34
# Mc/sec: 986.04
//
Query:       MMETSP1137-20121227|7373_1  [L=695]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (695 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       109  (0.0265724); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.17s 00:00:00.57 Elapsed: 00:00:00.64
# Mc/sec: 1433.32
//
Query:       MMETSP1137-20121227|7374_1  [L=250]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (250 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       122  (0.0297416); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.15s 00:00:00.38 Elapsed: 00:00:00.39
# Mc/sec: 846.08
//
Query:       MMETSP1137-20121227|7375_1  [L=530]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (530 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       413  (0.100683); expected 82.0 (0.02)
Passed bias filter:                      124  (0.0302292); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.16s 00:00:00.61 Elapsed: 00:00:00.95
# Mc/sec: 736.36
//
Query:       MMETSP1137-20121227|7376_1  [L=179]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (179 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        73  (0.0177962); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.17s 00:00:00.37 Elapsed: 00:00:00.34
# Mc/sec: 694.88
//
Query:       MMETSP1137-20121227|7377_1  [L=243]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (243 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        40  (0.00975134); expected 82.0 (0.02)
Passed bias filter:                       38  (0.00926377); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.16s 00:00:00.39 Elapsed: 00:00:00.40
# Mc/sec: 801.83
//
Query:       MMETSP1137-20121227|7378_1  [L=276]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (276 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        83  (0.020234); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.13s 00:00:00.35 Elapsed: 00:00:00.35
# Mc/sec: 1040.83
//
Query:       MMETSP1137-20121227|7379_1  [L=730]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (730 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       759  (0.185032); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                        24  (0.0058508); expected 4.1 (0.001)
Passed Fwd filter:                         9  (0.00219405); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.71u 0.16s 00:00:00.87 Elapsed: 00:00:00.64
# Mc/sec: 1505.50
//
Query:       MMETSP1137-20121227|7380_1  [L=279]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (279 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        87  (0.0212092); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.14s 00:00:00.36 Elapsed: 00:00:00.35
# Mc/sec: 1052.14
//
Query:       MMETSP1137-20121227|7381_1  [L=489]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-06   22.8   0.7    1.9e-06   22.4   0.5    1.0  1  TIGR00864 PCC: polycystin cation channel protein


Domain annotation for each model (and alignments):
>> TIGR00864  PCC: polycystin cation channel protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.4   0.5   4.6e-10   1.9e-06     311     454 ..     100     246 ..      92     273 .. 0.73

  Alignments for each domain:
  == domain 1    score: 22.4 bits;  conditional E-value: 4.6e-10
   TIGR00864 311 yrlvveklawldarkqcldraadlaivdsdalrrllvrkvtrslergvwlGlsdvnsveklhqveaseleegeeglagess....varaelcvrldqrs..qt.ssdlcsarrayvcelnpqvrvqdaevllvGlavfdlqgllqalaaqi 454
                  ++  e l+w +ar+ c +r++ la+++s+  + ll r +  s  r+ w+Gl+d +  ++  +  +       ++ +ge++       ae+c     r   +  +   cs  + y   l p +r   + ++   +a+  +   + a+a+  
  MMETSP1137-20121227|7381_1 100 LQIYHEALTWHEARDACEARGGTLAVINSPEQNDLL-REL--SEGRSTWIGLTDQEEEGRWIWNSTGAQPTFTDWRPGEPNndyySISAEHCAMSWTRDsvWGwNDFPCSITHGYXV-LIPFSRNATSVTIPASVASAASAAAVAAVATSA 246
                 5788999**********************9977666.555..55678*************999999999999*******97222246899997543332124324556999999976.567777766666666666666666555555433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (489 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       138  (0.0336421); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.15s 00:00:00.55 Elapsed: 00:00:00.69
# Mc/sec: 935.40
//
Query:       MMETSP1137-20121227|7383_1  [L=149]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0029   16.0   0.5     0.0041   15.5   0.2    1.4  1  TIGR01753 flav_short: flavodoxin


Domain annotation for each model (and alignments):
>> TIGR01753  flav_short: flavodoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.2     1e-06    0.0041      44     135 ..      49     143 ..      37     148 .. 0.80

  Alignments for each domain:
  == domain 1    score: 15.5 bits;  conditional E-value: 1e-06
   TIGR01753  44 leyDavllGcstwgdedleeddflpfveeleeidlegkkvalfGsgdtayefceavdkleerlkeaGakiia...eglkveedpeeeeldkleef 135
                  e Da++ ++ + g + l+ d+f+++v  ++   l+ k va+f + dt++    +  ++ + +k +G  +     ++l    d++++ + ++eef
  MMETSP1137-20121227|7383_1  49 EEVDALMKAADSDGGGTLDLDEFISLVIRVNIAILQAKLVAAFKAIDTDGSGYIVASEIGAAMKTLGYXLTXdqtKQLVQAADADGDGKMSMEEF 143
                 4689999999****************************************555566789999999999998732233334445555666666666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (149 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       127  (0.0309605); expected 82.0 (0.02)
Passed bias filter:                      106  (0.0258411); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.19u 0.18s 00:00:00.37 Elapsed: 00:00:00.27
# Mc/sec: 728.38
//
Query:       MMETSP1137-20121227|7384_1  [L=919]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (919 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       205  (0.0499756); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.59u 0.16s 00:00:00.75 Elapsed: 00:00:00.63
# Mc/sec: 1925.36
//
Query:       MMETSP1137-20121227|7385_1  [L=917]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (917 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        61  (0.0148708); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.51u 0.17s 00:00:00.68 Elapsed: 00:00:00.60
# Mc/sec: 2017.23
//
Query:       MMETSP1137-20121227|7386_1  [L=575]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (575 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       428  (0.104339); expected 82.0 (0.02)
Passed bias filter:                      180  (0.043881); expected 82.0 (0.02)
Passed Vit filter:                        32  (0.00780107); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.69u 0.15s 00:00:00.84 Elapsed: 00:00:00.85
# Mc/sec: 892.87
//
Query:       MMETSP1137-20121227|7387_1  [L=371]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (371 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       172  (0.0419308); expected 82.0 (0.02)
Passed bias filter:                       98  (0.0238908); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.16s 00:00:00.49 Elapsed: 00:00:00.49
# Mc/sec: 999.35
//
Query:       MMETSP1137-20121227|7389_1  [L=340]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (340 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.14s 00:00:00.37 Elapsed: 00:00:00.37
# Mc/sec: 1212.87
//
Query:       MMETSP1137-20121227|7390_1  [L=245]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.3e-70  233.1   2.1    4.1e-70  232.8   1.5    1.1  1  TIGR03692 ATP_dep_HslV: ATP-dependent protease HslVU, peptidase subunit
    4.8e-06   24.1   1.1    8.5e-06   23.3   0.8    1.5  1  TIGR03634 arc_protsome_B: proteasome endopeptidase complex, archaeal, beta subunit
    0.00016   19.3   0.6    0.00056   17.5   0.1    1.9  2  TIGR03690 20S_bact_beta: proteasome, beta subunit
     0.0054   14.0   0.6      0.039   11.2   0.0    2.0  2  TIGR03633 arc_protsome_A: proteasome endopeptidase complex, archaeal, alpha subunit


Domain annotation for each model (and alignments):
>> TIGR03692  ATP_dep_HslV: ATP-dependent protease HslVU, peptidase subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  232.8   1.5     4e-73   4.1e-70       1     169 [.      63     229 ..      63     231 .. 0.98

  Alignments for each domain:
  == domain 1    score: 232.8 bits;  conditional E-value: 4e-73
   TIGR03692   1 ttilavrkngkvviagdGqvtlgetvlkenarkvrrlyegkvlaGfaGstadaltLferfeekleeykgnlaraavelakdWrtdkvlrkLeallivadkeelllisGtgdviepeddviaiGsGgnyalaaaralleetelsaeeiaekalkiaadicvytnenivve 169
                 ttil+vrk++kv + gdGqvtlg++v+k narkvr+l eg v+aGfaG+tada+tLfer+e kl e+ +  +ra+ve+ak Wr+dk+lr+Lea++ivad + +l ++Gtgdv+ep d++i iGsGg +a+aaaral++ + ++ae + +ka+++a+d+c+ytn+++v+e
  MMETSP1137-20121227|7390_1  63 TTILSVRKDDKVFVIGDGQVTLGSQVIKPNARKVRKLKEG-VIAGFAGATADAMTLFERLEMKLGEHPET-MRACVEMAKAWRMDKYLRRLEAIMIVADANVSLTLTGTGDVLEPVDGIIGIGSGGAFATAAARALIDIEGMDAEAVGRKAMDVASDMCIYTNKQYVTE 229
                 9************************************877.9************************9876.69********************************************************************************************9987 PP

>> TIGR03634  arc_protsome_B: proteasome endopeptidase complex, archaeal, beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.3   0.8   8.2e-09   8.5e-06       2      64 ..      63     125 ..      62     218 .. 0.88

  Alignments for each domain:
  == domain 1    score: 23.3 bits;  conditional E-value: 8.2e-09
   TIGR03634   2 tTtvGikvkdgvvlAadkraslgnlvasknvkKvfkiddkialtiaGsvgdaqslvrllkaea 64 
                 tT++ ++ +d+v +  d +++lg+ v + n++Kv k+++ +   +aG  +da +l + l++++
  MMETSP1137-20121227|7390_1  63 TTILSVRKDDKVFVIGDGQVTLGSQVIKPNARKVRKLKEGVIAGFAGATADAMTLFERLEMKL 125
                 999****************************************************99886554 PP

>> TIGR03690  20S_bact_beta: proteasome, beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.1   5.4e-07   0.00056       3      74 ..      60     132 ..      58     166 .. 0.79
   2 ?   -0.1   0.0      0.14   1.4e+02     138     162 ..     181     205 ..     161     219 .. 0.72

  Alignments for each domain:
  == domain 1    score: 17.5 bits;  conditional E-value: 5.4e-07
   TIGR03690   3 phgttivalaykgGvllaGdrratqGnliasrdvekvfkadeysavgiaGtaglavelvklfqvel.ehyeki 74 
                   +tti+++   + v + Gd + t G  + + + +kv k  e  ++g+aG+++ a+ l    +++l eh e +
  MMETSP1137-20121227|7390_1  60 CSATTILSVRKDDKVFVIGDGQVTLGSQVIKPNARKVRKLKEGVIAGFAGATADAMTLFERLEMKLgEHPETM 132
                 579***************************************9999999999988888776666663444443 PP

  == domain 2    score: -0.1 bits;  conditional E-value: 0.14
   TIGR03690 138 svGsGsvfakgalkklykedlseed 162
                  +GsG  fa +a + l   +  +++
  MMETSP1137-20121227|7390_1 181 GIGSGGAFATAAARALIDIEGMDAE 205
                 689******9999988764433333 PP

>> TIGR03633  arc_protsome_A: proteasome endopeptidase complex, archaeal, alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.2   0.0   3.8e-05     0.039      29      86 ..      62     120 ..      58     137 .. 0.86
   2 ?    1.2   0.1     0.046        47      41      89 ..     154     202 ..     148     225 .. 0.70

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 3.8e-05
   TIGR03633  29 gttavGiktkegvvlivdkrit..sklleaesiekifkiDdhvgaataGlvaDarvlidr 86 
                 +tt + ++ ++ v +i+d ++t  s+++++ +  k+ k+ + v+a +aG  aDa +l +r
  MMETSP1137-20121227|7390_1  62 ATTILSVRKDDKVFVIGDGQVTlgSQVIKP-NARKVRKLKEGVIAGFAGATADAMTLFER 120
                 578899************998643566655.679*********************99886 PP

  == domain 2    score: 1.2 bits;  conditional E-value: 0.046
   TIGR03633  41 vvlivdkritsklleaesiekifkiDdhvgaataGlv..aDarvlidrarv 89 
                 +++++d  +   l  + +   +  +D  +g+ + G    a ar+lid+  +
  MMETSP1137-20121227|7390_1 154 IMIVADANVSLTLTGTGD--VLEPVDGIIGIGSGGAFatAAARALIDIEGM 202
                 555666555555544443..3567899999999997511578****98655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (245 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       163  (0.0397367); expected 82.0 (0.02)
Passed bias filter:                      106  (0.0258411); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.25u 0.14s 00:00:00.39 Elapsed: 00:00:00.51
# Mc/sec: 634.07
//
Query:       MMETSP1137-20121227|7391_1  [L=332]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.021   10.8   0.0      0.036   10.0   0.0    1.3  1  TIGR01631 Trypano_RHS: trypanosome RHS family


Domain annotation for each model (and alignments):
>> TIGR01631  Trypano_RHS: trypanosome RHS family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.0   8.9e-06     0.036     383     425 ..      53      95 ..      41     117 .. 0.84

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 8.9e-06
   TIGR01631 383 wgvillssPdeknfkeWskqrraakivinCdelkdlkAlvawr 425
                  +v+++ssPd+   k+W+kq  a ++ +  + ++dlk l   +
  MMETSP1137-20121227|7391_1  53 LPVLMISSPDPDISKDWVKQYSARELWMPMPSVEDLKVLKEFV 95 
                 57999*******************************9876554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (332 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        76  (0.0185275); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.24u 0.16s 00:00:00.40 Elapsed: 00:00:00.50
# Mc/sec: 876.41
//
Query:       MMETSP1137-20121227|7392_1  [L=727]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.031   12.5   3.2       0.11   10.7   2.2    1.9  1  TIGR03892 thiopep_precurs: thiazolylpeptide-type bacteriocin precursor


Domain annotation for each model (and alignments):
>> TIGR03892  thiopep_precurs: thiazolylpeptide-type bacteriocin precursor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   2.2   2.7e-05      0.11      24      43 ..     682     701 ..     670     701 .. 0.85

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 2.7e-05
   TIGR03892  24 sgatstsssSsCsTcsctsS 43 
                 +++  +s ++sC T+s+ts+
  MMETSP1137-20121227|7392_1 682 ADELVSSRGASCVTTSTTSC 701
                 466778999*********87 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (727 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       168  (0.0409556); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.16s 00:00:00.60 Elapsed: 00:00:00.85
# Mc/sec: 1128.90
//
Query:       MMETSP1137-20121227|7393_1  [L=127]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        3.7    4.5  10.2        4.1    4.3   7.1    1.0  1  TIGR02794 tolA_full: protein TolA


Domain annotation for each model (and alignments):
>> TIGR02794  tolA_full: protein TolA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   7.1     0.001       4.1      36     104 ..      14      80 ..       2      93 .. 0.66

  Alignments for each domain:
  == domain 1    score: 4.3 bits;  conditional E-value: 0.001
   TIGR02794  36 iiqAvlvDpaavaqqanrlqqqekkaakkepkpeepkqerqkkleqqaeeak.kkqaaeqarqkelekqr 104
                 ++ +++  ++       r+qq ++++ ++ pkp  p++ +++++eq  e+   k q++eq++ k++   +
  MMETSP1137-20121227|7393_1  14 SMRTQMGSTNNQSRNTGRQQQYASPTSDAGPKPRVPPRGTEREEEQLNENPDgKHQQPEQEHWKQQ---Q 80 
                 445555445555566777777778888888999999999999999999876525566677766666...2 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (127 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        74  (0.01804); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.15u 0.12s 00:00:00.27 Elapsed: 00:00:00.40
# Mc/sec: 419.07
//
Query:       MMETSP1137-20121227|7394_1  [L=284]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (284 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        38  (0.00926377); expected 82.0 (0.02)
Passed bias filter:                       37  (0.00901999); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.14s 00:00:00.37 Elapsed: 00:00:00.88
# Mc/sec: 425.96
//
Query:       MMETSP1137-20121227|7395_1  [L=863]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (863 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       156  (0.0380302); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.49u 0.21s 00:00:00.70 Elapsed: 00:00:00.69
# Mc/sec: 1650.82
//
Query:       MMETSP1137-20121227|7396_1  [L=142]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (142 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        66  (0.0160897); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.15s 00:00:00.29 Elapsed: 00:00:00.28
# Mc/sec: 646.29
//
Query:       MMETSP1137-20121227|7397_1  [L=405]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00073   16.9   0.0     0.0012   16.2   0.0    1.3  1  TIGR00633 xth: exodeoxyribonuclease III (xth)


Domain annotation for each model (and alignments):
>> TIGR00633  xth: exodeoxyribonuclease III (xth)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0     3e-07    0.0012      20     111 ..     297     399 ..     287     405 .] 0.68

  Alignments for each domain:
  == domain 1    score: 16.2 bits;  conditional E-value: 3e-07
   TIGR00633  20 lellkeekpDvlclQEtKvaeeqlpkell.....eeegYevafssakkk.gysGvallskeepes...vrvgigaeeedeegr..vitaefdeltvvnvYvPn 111
                 ++ +++ k D+++ QE  v+++++   +         gY+ ++  + +     G+a+l    + s   v + + ++++ +  r    t +f+++ v++vY P 
  MMETSP1137-20121227|7397_1 297 ISAMANDKIDIIAFQELNVHRNNQRILEAhkhsaFALGYKLFIAPTAEVaHIGGTAILISLRLLSegsVATFMHSHPKGNYIRikLTTPTFGTFHVWSVYAPL 399
                 56788999************96554333223344889*****999887735568999877555431114443444444444446567789***********95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (405 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       106  (0.0258411); expected 82.0 (0.02)
Passed bias filter:                       98  (0.0238908); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.23u 0.25s 00:00:00.48 Elapsed: 00:00:00.39
# Mc/sec: 1370.66
//
Query:       MMETSP1137-20121227|7398_1  [L=457]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (457 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       435  (0.106046); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.22s 00:00:00.52 Elapsed: 00:00:00.71
# Mc/sec: 849.56
//
Query:       MMETSP1137-20121227|7399_1  [L=371]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   6.6e-131  434.3   0.6   8.3e-131  434.0   0.4    1.0  1  TIGR03376 glycerol3P_DH: glycerol-3-phosphate dehydrogenase (NAD(+))


Domain annotation for each model (and alignments):
>> TIGR03376  glycerol3P_DH: glycerol-3-phosphate dehydrogenase (NAD(+))
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  434.0   0.4    2e-134  8.3e-131       1     340 [.      32     368 ..      32     369 .. 0.98

  Alignments for each domain:
  == domain 1    score: 434.0 bits;  conditional E-value: 2e-134
   TIGR03376   1 kvavvGsGnwGtaiAkivaenakalpelfeekvkmwvfeekiegkkltevineehenvkyLpgiklpenlvavpdleeaakdadilvfviPhqflekilkqlkgkvkkkaraisclkGlevskdgvkllsdiieeelgiacgvlsGanlAnevAkekfsettvaykepkdfdvdaevlkalferpyFrvsvvedvagveiagalknvvAiaaGfveGlelgdnakaAvlrlGllemikfaklffeesevtlveesaGvaDlittClggRnvkvaealaktg..ksleelekellngqklqGvatakeveellkkknleeefPlfeavykilyeelkikklie 340
                 k+a+vGsGn+G+a+ +i+++na ++ e f+++v+m+v+ee ++gkklt++in+e+envkyL+g+k   n+vavpd  ea+k+a ++ f +Phqfl+ i+ ++k  v ++a+ +s +kG++   +gv l+sd++ + l+  c+vl+Gan+Ane+A++ f+ett++yk     +++ + +k  f+ p+F+v +v+d  gve++galkn+vAi+aGf++Gl++g n+kaA++r+Gl emikf k+f++  + +++ es+GvaDlittC ggRn+k+aea ak+g  kslee+e ell gqklqG  takev+++lk k+le+efP+f++vyki+ye++++++++e
  MMETSP1137-20121227|7399_1  32 KIAMVGSGNFGSALTRILGQNALRHKE-FDDEVRMYVYEEMVDGKKLTDIINTENENVKYLKGAKFTPNVVAVPDXSEAVKGATMICFCLPHQFLKPIMPKIKESVAPGAKCLSAIKGIDFDDNGVVLISDLLRQGLNADCSVLMGANVANEMASDAFCETTIGYKI----KENGDLFKLAFDCPSFKVGTVQDTVGVELCGALKNIVAIGAGFCDGLGYGGNTKAAIIRIGLKEMIKFCKTFYKGIDDDTFLESCGVADLITTCFGGRNRKCAEAYAKHGksKSLEEIEAELLGGQKLQGTLTAKEVNHILKMKGLEHEFPFFTTVYKISYEDTPLSAITE 368
                 689*******************99988.******************************************************************************************************************************************9....8999999*****************************************************************************************************9966789*************************************************9998865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (371 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       125  (0.0304729); expected 82.0 (0.02)
Passed bias filter:                      107  (0.0260848); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.29u 0.20s 00:00:00.49 Elapsed: 00:00:00.54
# Mc/sec: 906.81
//
Query:       MMETSP1137-20121227|7400_1  [L=519]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (519 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       137  (0.0333983); expected 82.0 (0.02)
Passed bias filter:                      112  (0.0273038); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.12s 00:00:00.49 Elapsed: 00:00:00.71
# Mc/sec: 964.82
//
Query:       MMETSP1137-20121227|7402_1  [L=475]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (475 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        67  (0.0163335); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.17s 00:00:00.50 Elapsed: 00:00:00.44
# Mc/sec: 1424.88
//
Query:       MMETSP1137-20121227|7403_1  [L=200]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (200 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       110  (0.0268162); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.13s 00:00:00.33 Elapsed: 00:00:00.31
# Mc/sec: 851.54
//
Query:       MMETSP1137-20121227|7404_1  [L=696]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.7e-16   55.4   0.2    4.8e-09   33.3   0.0    2.1  2  TIGR01241 FtsH_fam: ATP-dependent metallopeptidase HflB
      1e-14   51.7   0.1    2.4e-08   30.6   0.0    2.1  2  TIGR01243 CDC48: AAA family ATPase, CDC48 subfamily
    1.2e-12   45.1   0.1    6.8e-08   29.5   0.0    2.1  2  TIGR03689 pup_AAA: proteasome ATPase
    6.5e-12   43.1   0.6      2e-05   21.8   0.1    2.2  2  TIGR01242 26Sp45: 26S proteasome subunit P45 family
    0.00077   15.8   0.0     0.0013   15.1   0.0    1.3  1  TIGR00763 lon: ATP-dependent protease La
     0.0013   15.7   0.0     0.0024   14.8   0.0    1.3  1  TIGR00635 ruvB: Holliday junction DNA helicase RuvB
      0.003   15.3   0.0     0.0057   14.4   0.0    1.4  1  TIGR00150 HI0065_YjeE: ATPase, YjeE family
     0.0031   13.9   0.0     0.0046   13.3   0.0    1.2  1  TIGR00602 rad24: checkpoint protein rad24
     0.0033   13.8   0.1     0.0052   13.2   0.1    1.2  1  TIGR03922 T7SS_EccA: type VII secretion AAA-ATPase EccA
     0.0037   14.6   0.0     0.0068   13.8   0.0    1.4  1  TIGR02640 gas_vesic_GvpN: gas vesicle protein GvpN
  ------ inclusion threshold ------
      0.014   12.7   0.0      0.024   12.0   0.0    1.3  1  TIGR03420 DnaA_homol_Hda: DnaA regulatory inactivator Hda
      0.033   10.4   0.0      0.058    9.6   0.0    1.3  1  TIGR00376 TIGR00376: putative DNA helicase
      0.056    9.4   0.0       0.11    8.4   0.0    1.5  1  TIGR02639 ClpA: ATP-dependent Clp protease ATP-binding subunit ClpA


Domain annotation for each model (and alignments):
>> TIGR01241  FtsH_fam: ATP-dependent metallopeptidase HflB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.0   1.7e-07   5.4e-05      68     119 ..     313     364 ..     287     368 .. 0.85
   2 !   33.3   0.0   1.5e-11   4.8e-09     173     272 ..     568     670 ..     558     675 .. 0.80

  Alignments for each domain:
  == domain 1    score: 19.9 bits;  conditional E-value: 1.7e-07
   TIGR01241  68 lveivdfLknpkkftklGakiPkGvllvGpPGtGktLlakavaGeagvpffs 119
                 l+ + df +++ k+   G     G+ll GpPGtGkt l ka+a   g++ ++
  MMETSP1137-20121227|7404_1 313 LKLLSDFQQKAGKYGVEGYPHKLGLLLHGPPGTGKTSLIKALAQHTGRSIIN 364
                 444679999******99999999********************988877665 PP

  == domain 2    score: 33.3 bits;  conditional E-value: 1.5e-11
   TIGR01241 173 dereqtLnqlLvemDGfetnegvivlaatnrpdvLDkaLlrPGrfDrqvvvdkPdlkgreeilkvhakkvklaeevd..lkkvarrtpG..fsGadlanlvnea 272
                 +e e  L  lL  +DG  ++ + i++ + n p+ LD+aL+rPGr D+++ +   + ++ +++l+ h   v++ +e d  ++++   + G  ++ ad++ l+ e 
  MMETSP1137-20121227|7404_1 568 EEDELNLAGLLNVLDGVVDTPERILIMTSNHPERLDPALIRPGRIDKKIFLGYMQHSECKQMLA-HYFTVEVTKEQDarIQAMLGGAKGlkMTPADMEQLCAEH 670
                 567888999********99999999999********************************9997.666666665555005555555555335789999998885 PP

>> TIGR01243  CDC48: AAA family ATPase, CDC48 subfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.0   2.5e-07   7.9e-05     213     244 ..     334     366 ..     318     422 .. 0.74
   2 !   30.6   0.0   7.6e-11   2.4e-08     577     668 ..     576     670 ..     565     681 .. 0.65

  Alignments for each domain:
  == domain 1    score: 19.0 bits;  conditional E-value: 2.5e-07
   TIGR01243 213 k.gvllygppgtgktllakavaneagayfiain 244
                 k g+ll gppgtgkt l ka+a+ +g  +i i 
  MMETSP1137-20121227|7404_1 334 KlGLLLHGPPGTGKTSLIKALAQHTGRSIINIP 366
                 337777777777777777777777777766664 PP

  == domain 2    score: 30.6 bits;  conditional E-value: 7.6e-11
   TIGR01243 577 qllteldgleensdvvviaatnrpdildpallrpgrldrlilvpap.deearleifkihtrslplaedvdleelakkteg..ytgadieavvrea 668
                  ll  ldg++++ + ++i ++n p+ ldpal+rpgr+d+ i++      e +  + +  t +++  +d  ++ +   ++g   t ad+e ++ e 
  MMETSP1137-20121227|7404_1 576 GLLNVLDGVVDTPERILIMTSNHPERLDPALIRPGRIDKKIFLGYMqHSECKQMLAHYFTVEVTKEQDARIQAMLGGAKGlkMTPADMEQLCAEH 670
                 46667777777777777777777777777777777777777665440345555555666667777777777766655555224677777777664 PP

>> TIGR03689  pup_AAA: proteasome ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   0.0   1.5e-05    0.0047     218     242 ..     336     360 ..     325     377 .. 0.86
   2 !   29.5   0.0   2.1e-10   6.8e-08     321     387 ..     577     643 ..     567     670 .. 0.89

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 1.5e-05
   TIGR03689 218 GvllyGPPGcGktliakavanslae 242
                 G+ll+GPPG+Gkt + ka+a+  ++
  MMETSP1137-20121227|7404_1 336 GLLLHGPPGTGKTSLIKALAQHTGR 360
                 9******************987655 PP

  == domain 2    score: 29.5 bits;  conditional E-value: 2.1e-10
   TIGR03689 321 llaeldGveslenviviGasnredlidPailrPGrldvkirierPdaeaaadilakyltedlPleed 387
                 ll  ldGv +    i+i  sn  + +dPa++rPGr+d ki ++  ++++ +++la+y+t ++  e+d
  MMETSP1137-20121227|7404_1 577 LLNVLDGVVDTPERILIMTSNHPERLDPALIRPGRIDKKIFLGYMQHSECKQMLAHYFTVEVTKEQD 643
                 8999*****************************************************9988876544 PP

>> TIGR01242  26Sp45: 26S proteasome subunit P45 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.8   0.1   6.2e-08     2e-05     157     187 ..     335     365 ..     322     372 .. 0.85
   2 !   19.4   0.0   3.3e-07    0.0001     246     337 ..     574     668 ..     559     679 .. 0.70

  Alignments for each domain:
  == domain 1    score: 21.8 bits;  conditional E-value: 6.2e-08
   TIGR01242 157 kGvllyGppGtGktllakavaeetnatfirv 187
                  G+ll+GppGtGkt l ka+a++t  ++i++
  MMETSP1137-20121227|7404_1 335 LGLLLHGPPGTGKTSLIKALAQHTGRSIINI 365
                 39*********************99888876 PP

  == domain 2    score: 19.4 bits;  conditional E-value: 3.3e-07
   TIGR01242 246 llqllaeldGfdprgnvkviaatnrldildpallrpGrfdrlievplpdleGrleilk.ihtrkmklaedvdleelaklteG..asGadlkaivt 337
                 l  ll  ldG     +  +i ++n ++ ldpal+rpGr+d+ i +   + +   ++l    t ++   +d  ++++   ++G  ++ ad+  +++
  MMETSP1137-20121227|7404_1 574 LAGLLNVLDGVVDTPERILIMTSNHPERLDPALIRPGRIDKKIFLGYMQHSECKQMLAhYFTVEVTKEQDARIQAMLGGAKGlkMTPADMEQLCA 668
                 6679999***999999999999*******************999887777666666540334444444444444433333331123355555555 PP

>> TIGR00763  lon: ATP-dependent protease La
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   4.1e-06    0.0013     356     386 ..     337     367 ..     329     376 .. 0.90

  Alignments for each domain:
  == domain 1    score: 15.1 bits;  conditional E-value: 4.1e-06
   TIGR00763 356 lclvGPPGVGKtSlaksiAkalnrkfvrlsl 386
                 l l+GPPG GKtSl k++A+ ++r  + + l
  MMETSP1137-20121227|7404_1 337 LLLHGPPGTGKTSLIKALAQHTGRSIINIPL 367
                 789*********************9998866 PP

>> TIGR00635  ruvB: Holliday junction DNA helicase RuvB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   7.5e-06    0.0024      33      79 ..     337     383 ..     318     386 .. 0.87

  Alignments for each domain:
  == domain 1    score: 14.8 bits;  conditional E-value: 7.5e-06
   TIGR00635  33 vllyGPPGlGkttlakiiakelgvklkitsgpalekpgDlaailtal 79 
                 +ll GPPG Gkt+l k +a+  g ++  +    ++ ++ l+ ++  l
  MMETSP1137-20121227|7404_1 337 LLLHGPPGTGKTSLIKALAQHTGRSIINIPLARINTNQQLMDVMHDL 383
                 79********************9999988888888888888887665 PP

>> TIGR00150  HI0065_YjeE: ATPase, YjeE family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.0   1.8e-05    0.0057      19      50 ..     331     362 ..     305     379 .. 0.76

  Alignments for each domain:
  == domain 1    score: 14.4 bits;  conditional E-value: 1.8e-05
   TIGR00150  19 ldlatvvlLkGdlGaGKttlvkgllkglGiqg 50 
                  + +  +lL+G  G+GKt+l+k+l+++ G ++
  MMETSP1137-20121227|7404_1 331 YPHKLGLLLHGPPGTGKTSLIKALAQHTGRSI 362
                 66777799*********************873 PP

>> TIGR00602  rad24: checkpoint protein rad24
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   0.0   1.5e-05    0.0046      93     139 ..     316     363 ..     260     380 .. 0.73

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 1.5e-05
   TIGR00602  93 ieeveewlkaqvLeskkkri.LLitGPsGCgKsTvikiLsKelgikvq 139
                 +++ ++       e  ++++ LL+ GP+G gK+  ik L+   g +++
  MMETSP1137-20121227|7404_1 316 LSDFQQKAGKYGVEGYPHKLgLLLHGPPGTGKTSLIKALAQHTGRSII 363
                 56666666666677788995499******************9998876 PP

>> TIGR03922  T7SS_EccA: type VII secretion AAA-ATPase EccA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   0.1   1.6e-05    0.0052     315     343 ..     337     364 ..     322     377 .. 0.82

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 1.6e-05
   TIGR03922 315 lllaGPPGtGkttiArvvakiyaGlgvlr 343
                 lll GPPGtGkt++ +++a+  +G ++++
  MMETSP1137-20121227|7404_1 337 LLLHGPPGTGKTSLIKALAQ-HTGRSIIN 364
                 799***************96.46666665 PP

>> TIGR02640  gas_vesic_GvpN: gas vesicle protein GvpN
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.0   2.2e-05    0.0068      24      52 ..     337     365 ..     314     382 .. 0.77

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 2.2e-05
   TIGR02640  24 vhlrGPaGtGktslalhvakkrdrPvvll 52 
                 + l GP GtGktsl  ++a++ +r ++ +
  MMETSP1137-20121227|7404_1 337 LLLHGPPGTGKTSLIKALAQHTGRSIINI 365
                 5589********************99865 PP

>> TIGR03420  DnaA_homol_Hda: DnaA regulatory inactivator Hda
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   7.7e-05     0.024       8      80 ..     295     373 ..     292     387 .. 0.71

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 7.7e-05
   TIGR03420   8 lkedatldnFlagenaellaalrel.........aeakaerllylwGesgsGksHLLqAacaaaeeagksaiylplkelaql 80 
                 l++++t+++ + +e++++l+ l+ +         +   ++  l l G++g+Gk+ L++A+++++   g+s+i +pl++++  
  MMETSP1137-20121227|7404_1 295 LSDQKTFKSLFFPEKESILKLLSDFqqkagkygvEGYPHKLGLLLHGPPGTGKTSLIKALAQHT---GRSIINIPLARINTN 373
                 56777777777777777777777666656666655556677799****************9866...678999999887543 PP

>> TIGR00376  TIGR00376: putative DNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.0   0.00018     0.058     177     194 ..     337     354 ..     296     362 .. 0.76

  Alignments for each domain:
  == domain 1    score: 9.6 bits;  conditional E-value: 0.00018
   TIGR00376 177 aliHGPpGtGktrtlvEl 194
                  l+HGPpGtGkt  +  l
  MMETSP1137-20121227|7404_1 337 LLLHGPPGTGKTSLIKAL 354
                 589*********877655 PP

>> TIGR02639  ClpA: ATP-dependent Clp protease ATP-binding subunit ClpA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   0.0   0.00035      0.11     423     515 ..     263     362 ..     245     374 .. 0.68

  Alignments for each domain:
  == domain 1    score: 8.4 bits;  conditional E-value: 0.00035
   TIGR02639 423 kdieevvakiakipeksvssddkekL....knl..ekeLkkkifGqdeaiealvkaikrsraGlkeenkPvg.sflfvGptGvGktelakqLaeelgvel 515
                 +  +++v++++   + ++ +d+k  +     +l  +k++k+  f   e+i +l +  ++    ++ e  P    +l  Gp G Gkt l k+La++ g ++
  MMETSP1137-20121227|7404_1 263 SPSASIVSEMTSTKRGATGADNKGGMpykrYKLsdQKTFKSLFFPEKESILKLLSDFQQKAGKYGVEGYPHKlGLLLHGPPGTGKTSLIKALAQHTGRSI 362
                 555566666666666666665543221110122114667888899999999999999988777888888865258999***************9877554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (696 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       180  (0.043881); expected 82.0 (0.02)
Passed bias filter:                      172  (0.0419308); expected 82.0 (0.02)
Passed Vit filter:                        66  (0.0160897); expected 4.1 (0.001)
Passed Fwd filter:                        13  (0.00316919); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.70u 0.15s 00:00:00.85 Elapsed: 00:00:00.49
# Mc/sec: 1874.78
//
Query:       MMETSP1137-20121227|7405_1  [L=486]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (486 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       288  (0.0702097); expected 82.0 (0.02)
Passed bias filter:                      110  (0.0268162); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.16s 00:00:00.52 Elapsed: 00:00:00.59
# Mc/sec: 1087.23
//
Query:       MMETSP1137-20121227|7406_1  [L=159]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (159 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        69  (0.0168211); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.14s 00:00:00.29 Elapsed: 00:00:00.52
# Mc/sec: 403.58
//
Query:       MMETSP1137-20121227|7407_1  [L=481]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (481 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        66  (0.0160897); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.15s 00:00:00.47 Elapsed: 00:00:00.50
# Mc/sec: 1269.74
//
Query:       MMETSP1137-20121227|7408_1  [L=295]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (295 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        59  (0.0143832); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.14s 00:00:00.39 Elapsed: 00:00:00.43
# Mc/sec: 905.51
//
Query:       MMETSP1137-20121227|7409_1  [L=65]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (65 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       100  (0.0243784); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.51
# Mc/sec: 168.22
//
Query:       MMETSP1137-20121227|7410_1  [L=210]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (210 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       251  (0.0611897); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.15s 00:00:00.37 Elapsed: 00:00:00.43
# Mc/sec: 644.60
//
Query:       MMETSP1137-20121227|7411_1  [L=377]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (377 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       114  (0.0277913); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.17s 00:00:00.44 Elapsed: 00:00:00.42
# Mc/sec: 1184.76
//
Query:       MMETSP1137-20121227|7412_1  [L=286]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (286 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        79  (0.0192589); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.16s 00:00:00.40 Elapsed: 00:00:00.37
# Mc/sec: 1020.24
//
Query:       MMETSP1137-20121227|7413_1  [L=382]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0034   14.7   0.9     0.0055   14.0   0.6    1.3  1  TIGR00549 mevalon_kin: mevalonate kinase


Domain annotation for each model (and alignments):
>> TIGR00549  mevalon_kin: mevalonate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.6   1.3e-06    0.0055     186     257 ..     187     257 ..     155     260 .. 0.92

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 1.3e-06
   TIGR00549 186 VakVrellekfpeviksileaigelvkeakaaledkdveqlgelmninqglLkslgvShpkleqlvelarka 257
                 V  V+++le+    ++++++ +g++vk   ++l + +veq+ ++m++ +   +++ v ++ +eq ++++  a
  MMETSP1137-20121227|7413_1 187 VDAVSSRLESA-IKMQQVTKSMGQVVKGMDKVLGSMNVEQISKVMDQFERSFENMDVRSEYVEQTMNASTTA 257
                 77888888886.899**************************************************9998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (382 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       333  (0.0811799); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.30u 0.12s 00:00:00.42 Elapsed: 00:00:00.44
# Mc/sec: 1145.91
//
Query:       MMETSP1137-20121227|7414_1  [L=728]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (728 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       163  (0.0397367); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.13s 00:00:00.57 Elapsed: 00:00:00.56
# Mc/sec: 1715.86
//
Query:       MMETSP1137-20121227|7415_1  [L=326]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (326 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       119  (0.0290102); expected 82.0 (0.02)
Passed bias filter:                      103  (0.0251097); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.17s 00:00:00.45 Elapsed: 00:00:00.41
# Mc/sec: 1049.47
//
Query:       MMETSP1137-20121227|7416_1  [L=922]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      2e-20   71.3   0.0      4e-20   70.3   0.0    1.5  1  TIGR00568 alkb: alkylated DNA repair protein AlkB


Domain annotation for each model (and alignments):
>> TIGR00568  alkb: alkylated DNA repair protein AlkB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.3   0.0   9.7e-24     4e-20      14     173 .]     713     896 ..     705     896 .. 0.73

  Alignments for each domain:
  == domain 1    score: 70.3 bits;  conditional E-value: 9.7e-24
   TIGR00568  14 lksilkeaeqdpfrqykeadg..........geektlsvartvlkkLrWvtlgeqYdytskeyetdkksPdfPkdlgdlvekrvaealg....fedfkaeaalvnlYapgatlslHiDrsEeDlr....lPllslslGldaifllGglkRse........kpkalrlesGDvviltGesRlafHgv 173
                 lk +l+++ q+   q     g           ++ ++   ++ l+k  W  ++++Y+ +     + ++ P +P++l  +v + +a+a++     + +++  +l n+Y+   +l++H+D+sE   +     P++s+s+G+++ f   +++ ++        kpk++rl+sGDv++++G++Rl+fH++
  MMETSP1137-20121227|7416_1 713 LKGVLDVEAQQGIVQLCRDLGvsaagfyapkTRDGAMHLHMMCLGK-HWNPVTNRYEDVR-SNVDSRRVPPLPPSLWSIVADAAAAATDacasIPAVRPGICLANFYSHAGRLGMHQDKSESRDSisrgSPVVSVSIGDSCDFAYSAVRPDDtemamgaaKPKQVRLDSGDVLVFGGPARLLFHSI 896
                 5555666666554444444444444332222233355555555555.6888888888554.4456677788*********99999998733335789************************854422237*****************999874454444468999*******************85 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (922 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       133  (0.0324232); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.16s 00:00:00.71 Elapsed: 00:00:00.54
# Mc/sec: 2253.59
//
Query:       MMETSP1137-20121227|7418_1  [L=213]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (213 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       128  (0.0312043); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.12s 00:00:00.32 Elapsed: 00:00:00.50
# Mc/sec: 562.27
//
Query:       MMETSP1137-20121227|7419_1  [L=430]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.4e-18   63.3   0.0      3e-18   62.9   0.0    1.0  1  TIGR03903 TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
    4.3e-07   27.4   0.0    7.5e-07   26.6   0.0    1.4  1  TIGR03724 arch_bud32: Kae1-associated kinase Bud32


Domain annotation for each model (and alignments):
>> TIGR03903  TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.9   0.0   1.4e-21     3e-18       2     202 ..      51     252 ..      50     257 .. 0.84

  Alignments for each domain:
  == domain 1    score: 62.9 bits;  conditional E-value: 1.4e-21
   TIGR03903   2 tghkvaikllRedaaeeerlvaRFrReialCarLshPnivaLlDsG....eaedgllFavF.eyveGrtlrevLaadGaLpaaetgr..LmlqvLDalaaahdaGvvhRDLkPqnimvsaadveshakvLDFGigaLlpgvedadeatltrttevlGsPaYaaPeqLRgepvt.aksDlYaWGLivleCLtGkrvvqGasvaevlykqL 202
                 t++++a+k++ +       +     +e ++ + L+hPn++++ D+G     ++++ l+ +F e+  G  l + +   Ga +  e ++   +lq + ++ + h++G+ hRDLk +n+++++ +v    kv+DFG++   p   d    +    ++v Gs +YaaPe L g      ++D+++ G+ ++  L G   ++ as ++  y +L
  MMETSP1137-20121227|7419_1  51 TKEAMAVKVIDTR----RMKLESILKECTMLECLNHPNVIKIKDHGlgrkATGQDHLYYIFmELASGGELFDQVIDRGANAMPEDVArgFVLQLVAGVMHCHEHGIAHRDLKLENVLLTKDGV---VKVIDFGLSYRYPIRPDGTIDRSVPLKDVCGSKSYAAPEVLAGQGYDgFAADVWSIGVSLFAMLSGFFPLDEASAKDWRYTKL 252
                 7777888887554....44455677899999*************9955544677888888769999*999999999998665444332489****************************9987...69***************9999999*******************98751689******99999999988888888887777666 PP

>> TIGR03724  arch_bud32: Kae1-associated kinase Bud32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.6   0.0   3.6e-10   7.5e-07      94     140 ..     135     182 ..      98     220 .. 0.73

  Alignments for each domain:
  == domain 1    score: 26.6 bits;  conditional E-value: 3.6e-10
   TIGR03724  94 ellkevGelvgklHkagivhgDlttsNiivkddk.lyliDfGLgkksk 140
                  ++ ++   v ++H++gi+h Dl  +N+++++d  + +iDfGL+++  
  MMETSP1137-20121227|7419_1 135 GFVLQLVAGVMHCHEHGIAHRDLKLENVLLTKDGvVKVIDFGLSYRYP 182
                 5555666678899*****************7655166*******9755 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (430 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        67  (0.0163335); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.34u 0.17s 00:00:00.51 Elapsed: 00:00:00.54
# Mc/sec: 1051.02
//
Query:       MMETSP1137-20121227|7421_1  [L=546]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (546 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.16s 00:00:00.52 Elapsed: 00:00:00.60
# Mc/sec: 1201.10
//
Query:       MMETSP1137-20121227|7422_1  [L=906]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (906 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       204  (0.0497318); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.55u 0.13s 00:00:00.68 Elapsed: 00:00:00.73
# Mc/sec: 1638.11
//
Query:       MMETSP1137-20121227|7423_1  [L=379]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.2e-54  183.6   0.0    1.4e-54  183.4   0.0    1.0  1  TIGR03224 benzo_boxA: benzoyl-CoA oxygenase/reductase, BoxA protein
    1.2e-34  117.7   0.0    4.3e-31  106.0   0.0    2.0  2  TIGR01931 cysJ: sulfite reductase [NADPH] flavoprotein, alpha-component
    2.3e-13   47.7   0.0    3.3e-13   47.2   0.0    1.1  1  TIGR01941 nqrF: NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit
    1.1e-09   35.5   0.0    1.6e-09   34.8   0.0    1.2  1  TIGR02160 PA_CoA_Oxy5: phenylacetate-CoA oxygenase/reductase, PaaK subunit
    5.8e-06   23.4   0.0    1.2e-05   22.4   0.0    1.5  1  TIGR02911 sulfite_red_B: sulfite reductase, subunit B


Domain annotation for each model (and alignments):
>> TIGR03224  benzo_boxA: benzoyl-CoA oxygenase/reductase, BoxA protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  183.4   0.0   1.7e-57   1.4e-54     116     411 .]      70     379 .]      37     379 .] 0.85

  Alignments for each domain:
  == domain 1    score: 183.4 bits;  conditional E-value: 1.7e-57
   TIGR03224 116 eaaqkgstlapwsaakpyvnlyaakapitatvvgnyrltdedaesdihhivldfgslpfpvlegqsigilppgtd.ekgkphylrqysvasprdgerprynnlaltvkrvt.....edhegnavrgvasnylcdlkkgdkvqvigpfgstflmpn.hpessilmictgtgsapmramterrrrrra.kg..eggklllffgartkeelpyfgplqklpk...dfidinfafsrtpee...pkryvqdaireraadvaallkddntyiyvcglkgmeegvlealrevaeaagldwetleprlraegrlhlety 411
                 ++     + + w  ++  vn y +kap t  ++   r+  + a  ++ hi++d     +p  egqs g++ppg + ++gkp  +r ys+as r g+  +    +l v+r t      + e+ a +gv+snylcd   g++v+++gp g  +l+p+  p+++++m+ tgtg ap r++  r   +++  g    g   lf+g  +k+ l y    q + k   d   +++a+sr+ ++    k y+qd + e +++++  + d+++++y cglkgm  g+ + l+ v++a+g +we+   + +++g+ h+e y
  MMETSP1137-20121227|7423_1  70 KKQDFLEAEPYWDQSNIPVNTYKNKAPFTGKIISVKRIVGAAATGETCHIIIDHEG-KMPYWEGQSYGVIPPGINpKNGKPNTVRLYSIASSRYGDDMTGKTTSLCVRRATfwcpeLQAEDPAKKGVCSNYLCDASVGEQVKLTGPSGKVMLIPExDPNADLIMVATGTGIAPYRSFIRRLFVEKTpYGevYKGLAWLFLGVANKDALLYDDEWQSVLKshpDNFRVDYALSREQKNkdgGKMYIQDKVAEYSDEIFDRM-DKGAHMYFCGLKGMMPGITQMLESVSAAKGIKWEDKLKQWKENGQWHVEVY 379
                 33344567788******************************************865.57899***********87478*******************************973333246788999******************************8369*****************9987654433312333678899*************877666555222556799****9875422279***************976.7899*********************************************98 PP

>> TIGR01931  cysJ: sulfite reductase [NADPH] flavoprotein, alpha-component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.0   0.0   6.1e-05      0.05     219     278 ..      81     139 ..      35     146 .. 0.80
   2 !  106.0   0.0   5.3e-34   4.3e-31     380     573 ..     149     359 ..     147     379 .] 0.81

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 6.1e-05
   TIGR01931 219 saelqveeseyskknPfeaevlenqkitgrdskkdvrhieldledsglkyepGDaLGvwy 278
                   ++++  ++y +k+Pf++++++ ++i g  ++ ++ hi +d e+ ++ y  G + Gv +
  MMETSP1137-20121227|7423_1  81 WDQSNIPVNTYKNKAPFTGKIISVKRIVGAAATGETCHIIIDHEG-KMPYWEGQSYGVIP 139
                 4456666899********************************765.799999***99975 PP

  == domain 2    score: 106.0 bits;  conditional E-value: 5.3e-34
   TIGR01931 380 pltprLYsiassqk...evddevhltvgvvkk.....eaegrarlGgasgflaerlkeddtvkvyveenenfrlPe.dkdtpiimigpGtGvaPfraflqereeega......eGknWlffGnphfaeDfLYqveWqkylkkg.vltkldlafsrDqke....kiYvqdrlreqgkelfeWlqeGahiYvCGdakkmakDvekaLldviakega 573
                 p t rLYsiass+      ++   l v  +++     +ae  a++G++s++l++ ++ +++vk+   + +   +Pe d++ ++im+++GtG+aP+r+f+++   e+       +G +Wlf G  + ++  LY  eWq  lk+     ++d a sr+qk+    k+Y+qd++ e ++e+f+ +++Gah+Y CG  k m   + ++L  v a +g 
  MMETSP1137-20121227|7423_1 149 PNTVRLYSIASSRYgddMTGKTTSLCVRRATFwcpelQAEDPAKKGVCSNYLCD-ASVGEQVKLTGPSGKVMLIPExDPNADLIMVATGTGIAPYRSFIRRLFVEKTpygevyKGLAWLFLGVAN-KDALLYDDEWQSVLKSHpDNFRVDYALSREQKNkdggKMYIQDKVAEYSDEIFDRMDKGAHMYFCG-LKGMMPGITQMLESVSAAKGI 359
                 6689********861113456667777776543333389999************.99******************7689*******************986543332222233899******987.6679***********863678**********9844446****************************.888889999999999888775 PP

>> TIGR01941  nqrF: NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.2   0.0     4e-16   3.3e-13     203     392 ..     149     354 ..     143     363 .. 0.79

  Alignments for each domain:
  == domain 1    score: 47.2 bits;  conditional E-value: 4e-16
   TIGR01941 203 eetvrayslan..ypeek..giiklnvriat..ppfa..naeippGkmssyifslkpGdkvtvsGpfGeffv...kdtdaelvfigGGaGmaplrshildllkrlkskrkis.....fwyGarskrevfyeedfde.leaendnfkyhvalsdplpednwtGytgfihnvlyenylkdhdap.ediefymcGpplmnaaviklledlG 392
                  +tvr ys+a+  y +++  ++  l vr at   p    +   + G++s y+ +   G++v ++Gp G++ +    d +a+l++++ G+G+ap rs i  l+ ++    ++      ++ G   k   +y++++++ l+++ dnf+   als  +   n +G   +i + + e   + +d   +  + y cG   m   + ++le++ 
  MMETSP1137-20121227|7423_1 149 PNTVRLYSIASsrYGDDMtgKTTSLCVRRATfwCPELqaEDPAKKGVCSNYLCDASVGEQVKLTGPSGKVMLipeXDPNADLIMVATGTGIAPYRSFIRRLFVEKTPYGEVYkglawLFLGVANKDALLYDDEWQSvLKSHPDNFRVDYALSREQ--KNKDGGKMYIQDKVAEYSDEIFDRMdKGAHMYFCGLKGMMPGITQMLESVS 354
                 5799*****975588875225789******954344333445889************************9864446999***********************9998776663233225679999999*******983567789*********877..5778888888887766555555543145789******999*******9875 PP

>> TIGR02160  PA_CoA_Oxy5: phenylacetate-CoA oxygenase/reductase, PaaK subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.8   0.0     2e-12   1.6e-09      74     231 ..     193     355 ..     186     370 .. 0.85

  Alignments for each domain:
  == domain 1    score: 34.8 bits;  conditional E-value: 2e-12
   TIGR02160  74 GGlfstwaneeiraGdtlevmaPqGrftskldaerakhyvavaaGsGitPilaivktvlaae.p.....kstftlvyanrrsasvmfaeeladlkdkypqrfallhvlsreereaellsGrldgeklkalldslie.vdevdeaflcGPaalvddaedalkalGv 231
                  G+ s+++ +   +G+ + +  P G+    ++ + +  +++va+G+Gi+P  + ++  + ++ p     k    l+ +  +++ +++ +e + +   +p  f++   lsre+++++  +  + ++k++++ d++ + +d+  ++++cG ++++  + + l+++  
  MMETSP1137-20121227|7423_1 193 KGVCSNYLCDA-SVGEQVKLTGPSGKVMLIPEXDPNADLIMVATGTGIAPYRSFIRRLFVEKtPygevyKGLAWLFLGVANKDALLYDDEWQSVLKSHPDNFRVDYALSREQKNKDGGKMYI-QDKVAEYSDEIFDrMDKGAHMYFCGLKGMMPGITQMLESVSA 355
                 58889999885.78**************************************999876654314222224455699999************************************9765555.579******999548999****************99998654 PP

>> TIGR02911  sulfite_red_B: sulfite reductase, subunit B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.4   0.0   1.4e-08   1.2e-05      66     170 ..     193     303 ..     190     363 .. 0.74

  Alignments for each domain:
  == domain 1    score: 22.4 bits;  conditional E-value: 1.4e-08
   TIGR02911  66 vgkvtdevfelkegdklflrgpygngfdvdny.kdkelvvvaggtgvapvkgvvey.fakns..kev.keld.livgfktredilfkedlaewkekinlvltldeaeeddk 170
                  g+ ++ + +  +g+++ l gp g  + + +   + +l++va gtg+ap +  ++  f++ +   ev k l  l +g  +++++l+ ++ +   +++   + +d a + ++
  MMETSP1137-20121227|7423_1 193 KGVCSNYLCDASVGEQVKLTGPSGKVMLIPEXdPNADLIMVATGTGIAPYRSFIRRlFVEKTpyGEVyKGLAwLFLGVANKDALLYDDEWQSVLKSHPDNFRVDYALSREQ 303
                 57888999999**************999965516899***************997526665422233255544789************99988777766666666533322 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (379 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       107  (0.0260848); expected 82.0 (0.02)
Passed bias filter:                       99  (0.0241346); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.35u 0.14s 00:00:00.49 Elapsed: 00:00:00.63
# Mc/sec: 794.03
//
Query:       MMETSP1137-20121227|7424_1  [L=575]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.9e-37  125.7   5.4    3.9e-37  125.7   3.8    2.4  3  TIGR02475 CobW: cobalamin biosynthesis protein CobW
    6.9e-06   23.5   0.2      0.048   11.0   0.0    2.2  2  TIGR00073 hypB: hydrogenase accessory protein HypB
    0.00087   16.4   1.0     0.0013   15.8   0.2    1.6  2  TIGR03819 heli_sec_ATPase: helicase/secretion neighborhood ATPase
     0.0023   15.6   0.1      0.011   13.4   0.0    2.0  2  TIGR00150 HI0065_YjeE: ATPase, YjeE family
     0.0094   13.6   0.3       0.11   10.0   0.0    2.4  2  TIGR00231 small_GTP: small GTP-binding protein domain
  ------ inclusion threshold ------
      0.025   12.4   0.0       0.26    9.2   0.0    2.4  3  TIGR02725 phenyl_P_gamma: phenylphosphate carboxylase, gamma subunit


Domain annotation for each model (and alignments):
>> TIGR02475  CobW: cobalamin biosynthesis protein CobW
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  125.7   3.8   5.7e-40   3.9e-37       4     251 ..      63     329 ..      60     337 .. 0.77
   2 ?  -10.3   6.7         6   4.1e+03     235     252 ..     372     389 ..     363     395 .. 0.76
   3 ?   -1.4   0.0      0.26   1.8e+02     320     341 ..     524     544 ..     518     545 .. 0.87

  Alignments for each domain:
  == domain 1    score: 125.7 bits;  conditional E-value: 5.7e-40
   TIGR02475   4 ipvtvvtGflGaGkttlirhllenaeGkriavivnefGdlGidGeilkacg.......ieacseeeivelanGcicctvaddflptlekll....areeeldhilietsGlalpkplvqafq.....wpeirsrvtvdgvvavvdsaava.aGrfaedldaleaqraadenldhespleelfedqlacadlvilnkadlldaaglekvraeiaeelpravkiveaeeGevdaevllGlg.....aaaeedlearkshhdleeeeeehdhd 251
                 +pvt+++GflGaGkttl++h+l n +G ++ ++vn+  ++ id +++ + +         +   e+ vel nGc cc+va++fl ++ekl+    +r    dhi++e+sG+a p+ +   f+      pe+     + ++v+vvd ++   + +  ++ ++ ++  + d + + +  + +l+ +q+ c d++++nk+dl+d + le  ++++++  p+a  i  +e+G+++ e +l  +     a+++ed e+r+  h+++   ++h h+
  MMETSP1137-20121227|7424_1  63 VPVTLLSGFLGAGKTTLLQHILTNKAGLKVGLVVNDVAEVNIDRSLVSTRSgaernasLGTNAAEDTVELQNGCACCSVAEEFLQSIEKLMtlsaERGVPWDHIVVEASGVAEPREIRDNFRnalvtQPELLAGTKLHTLVTVVDVSTFLdEFEKRNKVNQRTDLGTDDFSDQNNRQVVDLMCEQIECCDVLLMNKTDLVDEKHLELSKETMRTLNPSA-AIHVCERGRIALEHVLAAApexgvATMDEDGEHRRLVHEVKA--HNHSHE 329
                 9********************************************997543111100033445669***********************983332355668****************99997333335888899999********87765044555556666666667777777899*****************************9999998776654.5666889***99988865422222334556666666666444..555554 PP

  == domain 2    score: -10.3 bits;  conditional E-value: 6
   TIGR02475 235 rkshhdleeeeeehdhde 252
                  ++hh +e++++ h h e
  MMETSP1137-20121227|7424_1 372 HHAHHAHEHHGHAHSHGE 389
                 568999888888888854 PP

  == domain 3    score: -1.4 bits;  conditional E-value: 0.26
   TIGR02475 320 arstrlvviGlkdldeaaiaaa 341
                 +r+  lv iG   +d+aa++a 
  MMETSP1137-20121227|7424_1 524 DRRQELVFIGVS-MDQAAVTAL 544
                 68999******9.*****9875 PP

>> TIGR00073  hypB: hydrogenase accessory protein HypB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.4   0.0    0.0001      0.07      29      70 ..      61     102 ..      45     122 .. 0.81
   2 !   11.0   0.0   7.1e-05     0.048     155     193 ..     248     284 ..     236     299 .. 0.83

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 0.0001
   TIGR00073  29 gllvlnllss.iGsGktlllekliealkkevkiavieGDlitk 70 
                 +l+ + lls   G+Gkt+ll+++++++   +k++ ++ D++  
  MMETSP1137-20121227|7424_1  61 KLVPVTLLSGfLGAGKTTLLQHILTNKAG-LKVGLVVNDVAEV 102
                 556667776537************99887.9******999754 PP

  == domain 2    score: 11.0 bits;  conditional E-value: 7.1e-05
   TIGR00073 155 fkeadlilinkvdlveavdadvekvkadvkkinPeveii 193
                 +++ d++l+nk+dlv+   +++   k+ ++++nP++ i 
  MMETSP1137-20121227|7424_1 248 IECCDVLLMNKTDLVDEKHLEL--SKETMRTLNPSAAIH 284
                 6899************876655..5699*******9985 PP

>> TIGR03819  heli_sec_ATPase: helicase/secretion neighborhood ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.2   1.9e-06    0.0013     181     224 ..      66     109 ..      61     125 .. 0.88
   2 ?   -3.0   0.0         1     7e+02     288     309 ..     419     440 ..     418     444 .. 0.83

  Alignments for each domain:
  == domain 1    score: 15.8 bits;  conditional E-value: 1.9e-06
   TIGR03819 181 llvsGgtGsGkttLLsalLalvaedeRivlvedaaelrpdhphv 224
                  l+sG  G+GkttLL  +L++ a  +  ++v+d+ae+++d + v
  MMETSP1137-20121227|7424_1  66 TLLSGFLGAGKTTLLQHILTNKAGLKVGLVVNDVAEVNIDRSLV 109
                 5899**********************************997655 PP

  == domain 2    score: -3.0 bits;  conditional E-value: 1
   TIGR03819 288 nsaadvPaRleaLgalaGldra 309
                 n +++ P R eaL+++  l+++
  MMETSP1137-20121227|7424_1 419 NVVRQLPVRQEALALTEVLSKE 440
                 778999*******999888776 PP

>> TIGR00150  HI0065_YjeE: ATPase, YjeE family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.0   1.6e-05     0.011      23      44 ..      64      85 ..      44      94 .. 0.85
   2 ?   -1.2   0.0      0.51   3.5e+02      43     109 ..     445     510 ..     441     517 .. 0.75

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 1.6e-05
   TIGR00150 23 tvvlLkGdlGaGKttlvkgllk 44
                 v lL+G lGaGKttl++ +l 
  MMETSP1137-20121227|7424_1 64 PVTLLSGFLGAGKTTLLQHILT 85
                5889*************98875 PP

  == domain 2    score: -1.2 bits;  conditional E-value: 0.51
   TIGR00150  43 lkglGiqgevkSPtftlveeYneaklklyHlDlYrle.dkeelEllgleeylekegiilvEWpekkle 109
                 ++  G +g ++SP  +l++   +  l   H  ++  +   + +El      +++  +   EWpe k+e
  MMETSP1137-20121227|7424_1 445 AETKGESGAARSPMQALIRSKGFMWLSNSHTQIFYWAlAGKHFELTQYATWWHT--LPRDEWPESKKE 510
                 556678888889988888888888888888886555414578899999999988..778899988765 PP

>> TIGR00231  small_GTP: small GTP-binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.0   0.0   0.00017      0.11      10      29 ..      70      88 ..      63     106 .. 0.81
   2 ?    0.7   0.0      0.13        86     115     138 ..     252     273 ..     227     287 .. 0.69

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 0.00017
   TIGR00231 10 GhvdvGKstLlnsllknkis 29
                G+ ++GK+tLl+ +l+nk +
  MMETSP1137-20121227|7424_1 70 GFLGAGKTTLLQHILTNK-A 88
                8899*************9.4 PP

  == domain 2    score: 0.7 bits;  conditional E-value: 0.13
   TIGR00231 115 iilvvnKiDlkddlktkvkslfak 138
                  +l +nK Dl+d  +++    ++ 
  MMETSP1137-20121227|7424_1 252 DVLLMNKTDLVD--EKHLELSKET 273
                 5899********..5544444433 PP

>> TIGR02725  phenyl_P_gamma: phenylphosphate carboxylase, gamma subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.0      0.29     2e+02      31      69 ..     197     233 ..     163     244 .. 0.74
   2 ?    9.2   0.0   0.00038      0.26       5      49 ..     252     299 ..     248     306 .. 0.83
   3 ?   -3.8   0.0       4.3     3e+03      30      40 ..     400     410 ..     393     427 .. 0.54

  Alignments for each domain:
  == domain 1    score: -0.1 bits;  conditional E-value: 0.29
   TIGR02725  31 lkkytyqrvkaelsnaldkfpdrlqvrlgrgqlssqrfs 69 
                  k +t   v  ++s+ ld f  r +v   r +l ++ fs
  MMETSP1137-20121227|7424_1 197 TKLHTLVTV-VDVSTFLDEFEKRNKVN-QRTDLGTDDFS 233
                 555555444.58999999999999886.46777777776 PP

  == domain 2    score: 9.2 bits;  conditional E-value: 0.00038
   TIGR02725   5 evfvmdlaelpegkelels...vrtlnpglkkytyqrvkaelsnaldk 49 
                 +v++m+ ++l + k+lels   +rtlnp    +  +r +  l   l  
  MMETSP1137-20121227|7424_1 252 DVLLMNKTDLVDEKHLELSketMRTLNPSAAIHVCERGRIALEHVLAA 299
                 799***************866679****99988888888877777665 PP

  == domain 3    score: -3.8 bits;  conditional E-value: 4.3
   TIGR02725  30 glkkytyqrvk 40 
                 g+  + yqr +
  MMETSP1137-20121227|7424_1 400 GVSSFCYQRRR 410
                 44445555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (575 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       178  (0.0433935); expected 82.0 (0.02)
Passed bias filter:                      126  (0.0307167); expected 82.0 (0.02)
Passed Vit filter:                        32  (0.00780107); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.46u 0.15s 00:00:00.61 Elapsed: 00:00:00.68
# Mc/sec: 1116.08
//
Query:       MMETSP1137-20121227|7425_1  [L=339]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (339 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       152  (0.0370551); expected 82.0 (0.02)
Passed bias filter:                      116  (0.0282789); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.16s 00:00:00.46 Elapsed: 00:00:00.36
# Mc/sec: 1242.90
//
Query:       MMETSP1137-20121227|7426_1  [L=384]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.039    9.8   0.0      0.061    9.2   0.0    1.3  1  TIGR00870 trp: transient-receptor-potential calcium channel protein


Domain annotation for each model (and alignments):
>> TIGR00870  trp: transient-receptor-potential calcium channel protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   0.0   1.5e-05     0.061     103     162 ..     233     294 ..     221     334 .. 0.73

  Alignments for each domain:
  == domain 1    score: 9.2 bits;  conditional E-value: 1.5e-05
   TIGR00870 103 lllllkaarksltlselandes..tseftkgitalilAihkqnyeivklLlekgasvearak 162
                 +l+l++aa+ +l+++ la + +    +  +g t+l+ A+   +  +v++Ll+ gas ear  
  MMETSP1137-20121227|7426_1 233 ALHLAAAAGATLAVQVLARAGCpvDARAINGSTPLHWAAGGGQTAVVRALLAAGASAEARSS 294
                 566666666667777666665521356789**************************998864 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (384 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       123  (0.0299854); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.30u 0.11s 00:00:00.41 Elapsed: 00:00:00.44
# Mc/sec: 1151.90
//
Query:       MMETSP1137-20121227|7427_1  [L=647]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (647 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       182  (0.0443686); expected 82.0 (0.02)
Passed bias filter:                       96  (0.0234032); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.19s 00:00:00.61 Elapsed: 00:00:00.50
# Mc/sec: 1707.94
//
Query:       MMETSP1137-20121227|7428_1  [L=268]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0032   14.3   0.0      0.004   13.9   0.0    1.1  1  TIGR02037 degP_htrA_DO: peptidase Do


Domain annotation for each model (and alignments):
>> TIGR02037  degP_htrA_DO: peptidase Do
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.0   9.8e-07     0.004     259     423 ..     167     221 ..     142     253 .. 0.62

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 9.8e-07
   TIGR02037 259 kGalvaevlkgs.pAekaGlkaGDvilkvngkkiksaadlreaigtlkpgkkvklkilRkgkekeikvtlkeaeeekasseksekkellglsvadlseeaakkkkskeekkgvvvtkvkkkspaakaglkkgdvilsvnqkevksvaelkkvleeakkkervlllv 423
                 +G++va++l+g+ +A   +l+aGD+i ++n +++                                                                                                              +v+e   +l+++   +++++ v
  MMETSP1137-20121227|7428_1 167 RGVVVADILRGGfAALMTTLQAGDIIHAINAEPV-------------------------------------------------------------------------------------------------------------FTVEEAGLLLQRSV--GKISIAV 221
                 4555555555552233455555555555555555.............................................................................................................55555444444332..2233333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (268 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        97  (0.023647); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.24u 0.12s 00:00:00.36 Elapsed: 00:00:00.36
# Mc/sec: 982.59
//
Query:       MMETSP1137-20121227|7429_1  [L=156]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (156 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        42  (0.0102389); expected 82.0 (0.02)
Passed bias filter:                       41  (0.00999512); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.16s 00:00:00.33 Elapsed: 00:00:00.50
# Mc/sec: 411.81
//
Query:       MMETSP1137-20121227|7430_1  [L=799]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   8.7e-130  431.9   1.8   1.1e-110  368.8   0.1    2.4  2  TIGR00617 rpa1: replication factor-a protein 1 (rpa1)


Domain annotation for each model (and alignments):
>> TIGR00617  rpa1: replication factor-a protein 1 (rpa1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.1   0.2   1.9e-21   7.9e-18       9     176 ..       8     170 ..       2     179 .. 0.74
   2 !  368.8   0.1  2.6e-114  1.1e-110     178     600 ..     313     739 ..     187     743 .. 0.92

  Alignments for each domain:
  == domain 1    score: 62.1 bits;  conditional E-value: 1.9e-21
   TIGR00617   9 lalilenkeatgvp.tepvlQvldlkkinseqsseryrilisdgiqkskamlatqlnslvregelqegtivrltkfvvnvvgkegkkvlivselevvkkelkvedkigkpveeekvllsekeeqelaskpaeksatspaakkakkevaskanaaseeak...vaaeaarsas 176
                 ++++ +    t++p  +p +Q++d+kki   + + r r++isdg ++++amlatqln+lv++g+++++++v+l +f +n+v  +++kv+iv +++ v    k e  ig+p+  ++    +++   + + p  + +  ++++++  +++ ++   ++ ++   ++++ ++s++
  MMETSP1137-20121227|7430_1   8 IQQMYN---GTNQPgFNPKIQIVDVKKIAN-NGGDRHRLVISDGQHLMQAMLATQLNHLVEQGQISKFSVVELAEFLCNTV--QNRKVIIVLNVKAVG---KAEAVIGAPQRVDEAPVGPPQGGMMPQRPPMQQPGYSQPMNQGMNQPMHQPMGQPLNQpmgQPNPYQKSTM 170
                 444444...4456879999*********86.888***********************************************..569********9999...88899999999999755566655666655555544444444444433333333333332225555555555 PP

  == domain 2    score: 368.8 bits;  conditional E-value: 2.6e-114
   TIGR00617 178 rkvvpieslsPYqnkwtIkarVtnKseirtysnkrGegklFnvellDesgeIraTaFnevadkfydlievgkvYyiSkgslkiAnkqftnvkndYEltldedtvieeced...etaiPkikfnfvklddienvekdalvDvigvvqsvsptlsitsrknnkelkkRditlvDesgksvrvtLWgdeatkfdvsvqpviaiKgvrvsdFgGkslstlssstlivnPdipeaekLkgWydsegkgvkassiskmlssrvgGsseerktiaevkaenlgksdkpdyfsvkatisllkkd..nalYraCpkedCnKKvv..degdgtyrCEkCdknvaefkyryilqieisDetgqlwvtlFddsaekilg.ksaaelgelkeede.defekilkelqfveyifrlrvkedtyndesRvklTVasvdkvnykeeak 600
                   ++p++sl+PYqn+wtI++rV +K+  rtysn+rG+gklFn ++ D  geIr+ aFn+ +d+fyd +evg+v++iS+g+lk+ n  f+++ +++E+tl++ +++e+c +    +aiPk ++ f+ +d +e v+ ++ vDvig++ + ++ ++ t  k+++e++kR ++++D s ksv+vt+ g +a +     +  i iKg++v  ++ ksl   s++   + Pd+pe++ L gW+++eg+ +  +sis+   ++++ +++ r++ a++++  lg++  pd+fs + +i+ +k+d  +++Y aCp+  C+KKv+  de + +  CEkC+k v     r+i++   +D  g ++v+ Fd+ + k+lg k+a+el  lke+++  ef + + + +f+  i +++vk+d++nde R k+T +s  +vny ee +
  MMETSP1137-20121227|7430_1 313 LIICPVASLNPYQNRWTIRVRVMSKN-TRTYSNARGDGKLFNTDVADHTGEIRVSAFNQEVDSFYDRLEVGSVFLISGGTLKPSNVAFNKTGHAFEITLNRGSTVERCDEpvgAEAIPKGNYTFIPIDRLETVADETFVDVIGIITQCDDPVTYT-NKAGREVTKRTLQIADRSLKSVEVTFFGSDAPDPRLITNVSISIKGAKVGSWNTKSLTCFSGTPFETSPDLPESHDLVGWWQREGHRIAPQSISTPGGGGAAAANARRINFADIENLALGQNTMPDHFSTNCYITHIKTDkrTLWYIACPT--CKKKVLsaDEFNLEGHCEKCNKTVMGA-RRWIFSALCNDVSGSRYVSFFDEMGMKLLGgKTADELAPLKEQEPsTEFDQYFLKHSFQRCIMKCSVKSDSWNDEARLKVTCTSFTPVNYVEEXE 739
                 3499********************96.6********************************************************************************98333567**************************************9.5667********************************99999*********************************************999999999999999999**********************************99889******74..9****83355667779******99876.599************************995499********7776269******************************************99986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (799 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       142  (0.0346173); expected 82.0 (0.02)
Passed bias filter:                      105  (0.0255973); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.67u 0.17s 00:00:00.84 Elapsed: 00:00:00.51
# Mc/sec: 2067.83
//
Query:       MMETSP1137-20121227|7431_1  [L=124]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (124 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        93  (0.0226719); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.12s 00:00:00.27 Elapsed: 00:00:00.31
# Mc/sec: 527.96
//
Query:       MMETSP1137-20121227|7432_1  [L=715]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (715 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        94  (0.0229157); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.11s 00:00:00.54 Elapsed: 00:00:00.55
# Mc/sec: 1715.86
//
Query:       MMETSP1137-20121227|7434_1  [L=443]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (443 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        95  (0.0231594); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.13s 00:00:00.44 Elapsed: 00:00:00.41
# Mc/sec: 1426.13
//
Query:       MMETSP1137-20121227|7436_1  [L=430]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (430 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        68  (0.0165773); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.17s 00:00:00.46 Elapsed: 00:00:00.59
# Mc/sec: 961.95
//
Query:       MMETSP1137-20121227|7437_1  [L=1017]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1017 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       117  (0.0285227); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.66u 0.18s 00:00:00.84 Elapsed: 00:00:00.62
# Mc/sec: 2165.05
//
Query:       MMETSP1137-20121227|7438_1  [L=440]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.3e-11   40.9   0.0    3.3e-11   40.4   0.0    1.3  1  TIGR00860 LIC: cation transporter family protein


Domain annotation for each model (and alignments):
>> TIGR00860  LIC: cation transporter family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.4   0.0   7.9e-15   3.3e-11     152     331 ..     116     290 ..      21     312 .. 0.89

  Alignments for each domain:
  == domain 1    score: 40.4 bits;  conditional E-value: 7.9e-15
   TIGR00860 152 rltltlaCpmdlknfPlDvQnCslkleSygYttddiklelkeqeavqvdeslfielpefellgvlktrseteetstgeYselklslvlrRrilYYllqlyiPsillvilslvsFwlnkdasgarvsLgittlLtlttfssgvreslPavsyvkaIdvylvvclvfvflalleyalVnyvv 331
                 r+ +t     +l+ fP+D Q  +++le     + +i      +e+     ++  e pef+l   l+  +   +   ++ +el++ + l+R   YY+ + +    l++ +sl  + +    +g r  L  t++Lt ttf  ++ +   +v+y k+Idvy + + v +f+a    a++ +++
  MMETSP1137-20121227|7438_1 116 RFAVTVKERFNLRTFPFDIQYLNIRLEID--NGGEITCATTDDEPAVFLAGV--ESPEFHLPPDLHCVYG-VHPGPNDMEELHIVVFLKRAEPYYMWNGFFLLWLISTVSLATWSVHWRLVGSRLRLDLTLVLTATTFKQLMGNETARVAYLKIIDVYAILVVVQLFIATFLHAIIGFLM 290
                 666666667899********999999954..444688888888888888888..9******998888888.5899999*****************************************************************************************9999888886665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (440 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       100  (0.0243784); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.31u 0.13s 00:00:00.44 Elapsed: 00:00:00.46
# Mc/sec: 1262.50
//
Query:       MMETSP1137-20121227|7439_1  [L=265]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (265 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       186  (0.0453437); expected 82.0 (0.02)
Passed bias filter:                      110  (0.0268162); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.14s 00:00:00.40 Elapsed: 00:00:00.44
# Mc/sec: 794.93
//
Query:       MMETSP1137-20121227|7440_1  [L=180]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0016   15.4   0.0      0.007   13.3   0.0    1.8  2  TIGR03674 fen_arch: flap structure-specific endonuclease


Domain annotation for each model (and alignments):
>> TIGR03674  fen_arch: flap structure-specific endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   0.0   1.7e-06     0.007      76     120 ..       2      46 ..       1      97 [. 0.92
   2 ?    0.2   0.0     0.016        66     228     249 ..     156     177 ..     135     179 .. 0.85

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 1.7e-06
   TIGR03674  76 vyvFDGkppelKkeeleeRrevreeaeekleealekgdleeaaky 120
                 ++vFDG++   K+++   Rr  ++ a+++  +a+++  ++ a k 
  MMETSP1137-20121227|7440_1   2 IFVFDGHSYPPKQATQGARRADQAAARQQAIAAQSRSAVAGADKA 46 
                 9****************************9999999888877765 PP

  == domain 2    score: 0.2 bits;  conditional E-value: 0.016
   TIGR03674 228 diailvGTDynegvkgiGpkka 249
                  ++il G Dy   ++g G+kk 
  MMETSP1137-20121227|7440_1 156 VLTILSGNDYFLNLPGWGVKKV 177
                 4689***************996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (180 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        73  (0.0177962); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.17u 0.13s 00:00:00.30 Elapsed: 00:00:00.34
# Mc/sec: 698.77
//
Query:       MMETSP1137-20121227|7442_1  [L=105]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (105 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        27  (0.00658216); expected 82.0 (0.02)
Passed bias filter:                       25  (0.00609459); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.26
# Mc/sec: 533.03
//
Query:       MMETSP1137-20121227|7443_1  [L=777]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (777 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       126  (0.0307167); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.47u 0.17s 00:00:00.64 Elapsed: 00:00:00.72
# Mc/sec: 1424.38
//
Query:       MMETSP1137-20121227|7444_1  [L=42]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (42 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        50  (0.0121892); expected 82.0 (0.02)
Passed bias filter:                       38  (0.00926377); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.18s 00:00:00.28 Elapsed: 00:00:00.28
# Mc/sec: 197.98
//
Query:       MMETSP1137-20121227|7445_1  [L=493]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.3e-14   51.3   0.0    4.2e-14   50.4   0.0    1.3  1  TIGR01628 PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family
    4.3e-13   46.9   5.7    4.3e-13   46.9   4.0    3.2  2  TIGR01622 SF-CC1: splicing factor, CC1-like family
    3.4e-10   37.9   0.0    5.5e-10   37.2   0.0    1.2  1  TIGR01659 sex-lethal: sex-lethal family splicing factor
    1.9e-09   35.4   0.0      3e-09   34.7   0.0    1.2  1  TIGR01661 ELAV_HUD_SF: ELAV/HuD family splicing factor
    2.7e-07   27.3   0.0    2.7e-07   27.3   0.0    3.4  4  TIGR01642 U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor
    3.5e-07   27.2   0.0    5.5e-07   26.5   0.0    1.2  1  TIGR01645 half-pint: poly-U binding splicing factor, half-pint family
    0.00065   16.4   0.0    0.00065   16.4   0.0    2.1  2  TIGR01648 hnRNP-R-Q: hnRNP-R, Q splicing factor family
     0.0072   13.2   0.0      0.014   12.2   0.0    1.4  2  TIGR01649 hnRNP-L_PTB: hnRNP-L/PTB/hephaestus splicing factor family


Domain annotation for each model (and alignments):
>> TIGR01628  PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.4   0.0   8.3e-17   4.2e-14     288     363 ..      64     140 ..      61     143 .. 0.94

  Alignments for each domain:
  == domain 1    score: 50.4 bits;  conditional E-value: 8.3e-17
   TIGR01628 288 lYvkNlddtvddekLrelFeefGeitSakvmld.ekekSkgFGFVcfssqeeAnkAvtelhgkilngkPLyvalAqr 363
                 l v N+  + + e+Lre+F+++G++  + + +d  +++S+gFGF+ f+++eeA++A+   + ++l+g+ L v +Aq+
  MMETSP1137-20121227|7445_1  64 LKVDNFPFNTTAEDLREMFSKYGDVRDCYIPRDhYTNQSRGFGFIRFATEEEAQDAIDGCDRRVLDGRELRVQVAQH 140
                 6688999999***********************7789**************************************96 PP

>> TIGR01622  SF-CC1: splicing factor, CC1-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.9   4.0   8.4e-16   4.3e-13     220     300 ..      62     142 ..      48     173 .. 0.88
   2 ?  -27.8  56.5         8   4.1e+03      32     116 ..     301     387 ..     269     406 .. 0.45

  Alignments for each domain:
  == domain 1    score: 46.9 bits;  conditional E-value: 8.4e-16
   TIGR01622 220 lkLYvGnlhfnitEqeLrqiFepFGeielvqlqkDpetGrskGyGFiqFsdaeeakeAleklNGlelAGReikvglasDvt 300
                   L v n+ fn t ++Lr++F  +G++ +  +++D +t +s+G+GFi+F   eea++A+       l GRe++v  a+ + 
  MMETSP1137-20121227|7445_1  62 ISLKVDNFPFNTTAEDLREMFSKYGDVRDCYIPRDHYTNQSRGFGFIRFATEEEAQDAIDGCDRRVLDGRELRVQVAQHSR 142
                 568899999*************************************************99999999*********999765 PP

  == domain 2    score: -27.8 bits;  conditional E-value: 8
   TIGR01622  32 drsrdRersrskerdrdfdrrdrdrdkyrdrerrsrkrreserererekerrredevrrkrkeredrrerrekeer..lkeelteee 116
                 +r+rd +r   ++rdr+ +r d d d  rdr rrsr++ + e +r+  ++ rr+d   r++k++e+++e ++k+++   k+++ + e
  MMETSP1137-20121227|7445_1 301 RRDRDYDRYDRRDRDRRSRRDDEDEDDRRDRSRRSRRDDDDEDDRRDRRSSRRDDDDDRRKKRDESESESDDKRDKrrRKKDESDSE 387
                 233333333334445544444555555555555555444444444433333333333334444444444444422211222222322 PP

>> TIGR01659  sex-lethal: sex-lethal family splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.2   0.0   1.1e-12   5.5e-10     196     262 ..      64     130 ..      60     142 .. 0.89

  Alignments for each domain:
  == domain 1    score: 37.2 bits;  conditional E-value: 1.1e-12
   TIGR01659 196 lyvtnlprtitddqldtifgkygsivqknilrdkltgkprgvafvrfnkreeaqeaisalnnvipeg 262
                 l v n+p   t ++l  +f kyg + +  i rd++t + rg  f+rf   eeaq+ai   +  + +g
  MMETSP1137-20121227|7445_1  64 LKVDNFPFNTTAEDLREMFSKYGDVRDCYIPRDHYTNQSRGFGFIRFATEEEAQDAIDGCDRRVLDG 130
                 7899*****************************************************9887776666 PP

>> TIGR01661  ELAV_HUD_SF: ELAV/HuD family splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.7   0.0   5.9e-12     3e-09       7      78 ..      65     136 ..      61     145 .. 0.57

  Alignments for each domain:
  == domain 1    score: 34.7 bits;  conditional E-value: 5.9e-12
   TIGR01661   7 ivnylPqtmtqeeirslftsiGeiescklvrdkvtGqslGyGfvnyvreedaekavnslnGlrlqnktikvs 78 
                  v+ +P + t e++r +f+  G++  c + rd  t qs G+Gf+ +  ee+a+ a++  +   l  + ++v 
  MMETSP1137-20121227|7445_1  65 KVDNFPFNTTAEDLREMFSKYGDVRDCYIPRDHYTNQSRGFGFIRFATEEEAQDAIDGCDRRVLDGRELRVQ 136
                 445556666666666666666666666666666666666666666666666666666555555555555555 PP

>> TIGR01642  U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.3   0.0   5.3e-10   2.7e-07     301     375 ..      66     140 ..      61     149 .. 0.94
   2 ?   -2.9   1.0      0.72   3.7e+02      27      43 ..     152     168 ..     139     177 .. 0.46
   3 ?  -28.4  54.3         8   4.1e+03      25     105 ..     302     381 ..     273     386 .. 0.44
   4 ?  -21.1  49.4         8   4.1e+03       2      83 ..     307     389 ..     307     408 .. 0.72

  Alignments for each domain:
  == domain 1    score: 27.3 bits;  conditional E-value: 5.3e-10
   TIGR01642 301 ignLPldlkddqvkeLLesFGdLkaFnliKdlatGlsKGyaFceykdssvtdlAiaaLnGiklgdkkLnvkrAtv 375
                 ++n P++ + + ++e+  ++Gd++   + +d  t +s+G++F+ +     ++ Ai + +  +l ++ L v+ A  
  MMETSP1137-20121227|7445_1  66 VDNFPFNTTAEDLREMFSKYGDVRDCYIPRDHYTNQSRGFGFIRFATEEEAQDAIDGCDRRVLDGRELRVQVAQH 140
                 89*********************************************************************9965 PP

  == domain 2    score: -2.9 bits;  conditional E-value: 0.72
   TIGR01642  27 RsrdrsrdRdRdrrdrr 43 
                 R   r++ RdR r dr 
  MMETSP1137-20121227|7445_1 152 RFDRRDDPRDRGRDDRG 168
                 33333444444444332 PP

  == domain 3    score: -28.4 bits;  conditional E-value: 8
   TIGR01642  25 RkRsrdrsrdRdRdrrdrrrsrrkdsR.dRdrrrydsrsissleedsrrrSRdrirrrsrsssseskerrrsrkrsssnekk 105
                 R+R+ dr + RdRdrr+rr    +d+R dR rr++++ +  ++++   rrS  r++ ++r +++++ e +   kr +++ kk
  MMETSP1137-20121227|7445_1 302 RDRDYDRYDRRDRDRRSRRDDEDEDDRrDRSRRSRRDDD--DEDDRRDRRSSRRDDDDDRRKKRDESESESDDKRDKRRRKK 381
                 667777777777777755555544443122222222222..22222223333333333333333333333333333333333 PP

  == domain 4    score: -21.1 bits;  conditional E-value: 8
   TIGR01642   2 DkekdrerEksrer.drdkskeRsRkRsrdrsrdRdRdrrdrrrsrrkdsRdRdrrrydsrsissleedsrrrSRdrirrrsr 83 
                 D++ +r+r+    r d+d    R+R R+  r++d + drrdrr srr+d+ dR+++r +s+s s+++ d+rrr +d+ ++++ 
  MMETSP1137-20121227|7445_1 307 DRYDRRDRDRRSRRdDEDEDDRRDRSRRSRRDDDDEDDRRDRRSSRRDDDDDRRKKRDESESESDDKRDKRRRKKDESDSEDD 389
                 667777766544440334444566666666666666789999********************999999998888887555443 PP

>> TIGR01645  half-pint: poly-U binding splicing factor, half-pint family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.5   0.0   1.1e-09   5.5e-07     214     275 ..      75     136 ..      70     146 .. 0.92

  Alignments for each domain:
  == domain 1    score: 26.5 bits;  conditional E-value: 1.1e-09
   TIGR01645 214 eedlksvfeafGeivkcklaraptlrkhkGfGflefenlqsqseaiasmnlfdlGGqllrvG 275
                  edl+ +f  +G++ +c + r+  +++ +GfGf+ f+  +  ++ai + +   l G+ lrv 
  MMETSP1137-20121227|7445_1  75 AEDLREMFSKYGDVRDCYIPRDHYTNQSRGFGFIRFATEEEAQDAIDGCDRRVLDGRELRVQ 136
                 68*******************************************************9*985 PP

>> TIGR01648  hnRNP-R-Q: hnRNP-R, Q splicing factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0   1.3e-06   0.00065      46     132 ..      47     135 ..      41     141 .. 0.84
   2 ?   -1.4   2.6      0.31   1.6e+02     362     404 ..     266     309 ..     244     326 .. 0.57

  Alignments for each domain:
  == domain 1    score: 16.4 bits;  conditional E-value: 1.3e-06
   TIGR01648  46 PPPgyegaqPerGcev..fvGkiPrdlyedelvPlfekvGkiyelrlmmd.ldGknrGyafvtfcnkeeakeavkelnnyeirpGrllGv 132
                 PP   +  +P+ G  +   v   P +   ++l  +f k G + +  +  d +  + rG+ f+ f+  eea++a+  ++   + +Gr l v
  MMETSP1137-20121227|7445_1  47 PPKAMSRGPPDVGGLIslKVDNFPFNTTAEDLREMFSKYGDVRDCYIPRDhYTNQSRGFGFIRFATEEEAQDAIDGCDR-RVLDGRELRV 135
                 5666788888888655215788999999999*******************999***********************997.4667777766 PP

  == domain 2    score: -1.4 bits;  conditional E-value: 0.31
   TIGR01648 362 pakkgsirgrgrgaags.raaGvrGlglrGyeayrglysg...yhek 404
                 p +++ + +rgr   g  r    rG+  +Gy+ ++g  ++   y+ +
  MMETSP1137-20121227|7445_1 266 PYTRALLTDRGRDDRGYgR---ERGYDRGGYDRGYGYDRRdrdYDRY 309
                 5556666777766544435...4555555555555444442222222 PP

>> TIGR01649  hnRNP-L_PTB: hnRNP-L/PTB/hephaestus splicing factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.2   0.0   2.7e-05     0.014     311     374 ..      73     141 ..      18     151 .. 0.86
   2 ?   -4.2   0.4       2.6   1.3e+03     230     255 ..     385     415 ..     336     447 .. 0.41

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 2.7e-05
   TIGR01649 311 vtpdalFnlfgvYGdvervki.....lknkketalvemadpqqaqlalthLdkvklfgkklrvavSkqe 374
                  t++ l  +f+ YGdv+   i       + ++ +++ +a++++aq a++  d+  l g++lrv v++++
  MMETSP1137-20121227|7445_1  73 TTAEDLREMFSKYGDVRDCYIprdhyTNQSRGFGFIRFATEEEAQDAIDGCDRRVLDGRELRVQVAQHS 141
                 56788899********988772221144556789*******************************9996 PP

  == domain 2    score: -4.2 bits;  conditional E-value: 2.6
   TIGR01649 230 d.....allrdrPssygdavdglssrtgala 255
                 d     ++ ++ P   +  ++glss++ a +
  MMETSP1137-20121227|7445_1 385 DseddxEAQQQGPPPPRRQRGGLSSPGRARP 415
                 1222222233333333333344444432222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (493 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       152  (0.0370551); expected 82.0 (0.02)
Passed bias filter:                       99  (0.0241346); expected 82.0 (0.02)
Passed Vit filter:                        24  (0.0058508); expected 4.1 (0.001)
Passed Fwd filter:                        12  (0.0029254); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.52u 0.17s 00:00:00.69 Elapsed: 00:00:00.62
# Mc/sec: 1049.53
//
Query:       MMETSP1137-20121227|7446_1  [L=786]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (786 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        92  (0.0224281); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.11s 00:00:00.57 Elapsed: 00:00:00.55
# Mc/sec: 1886.24
//
Query:       MMETSP1137-20121227|7447_1  [L=323]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (323 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       102  (0.0248659); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.17s 00:00:00.43 Elapsed: 00:00:00.42
# Mc/sec: 1015.06
//
Query:       MMETSP1137-20121227|7449_1  [L=333]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (333 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       123  (0.0299854); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.14s 00:00:00.41 Elapsed: 00:00:00.33
# Mc/sec: 1331.89
//
Query:       MMETSP1137-20121227|7450_1  [L=696]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   1.9e-192  638.2   0.0   2.3e-192  638.0   0.0    1.0  1  TIGR01241 FtsH_fam: ATP-dependent metallopeptidase HflB
    2.9e-73  244.9   0.3    4.5e-73  244.3   0.2    1.2  1  TIGR01242 26Sp45: 26S proteasome subunit P45 family
    2.4e-65  219.0   0.1    3.3e-65  218.6   0.1    1.1  1  TIGR01243 CDC48: AAA family ATPase, CDC48 subfamily
    5.2e-40  135.4   0.2    8.3e-40  134.7   0.1    1.3  1  TIGR03689 pup_AAA: proteasome ATPase
    1.6e-06   25.1   0.3    1.3e-05   22.2   0.0    2.2  2  TIGR00390 hslU: ATP-dependent protease HslVU, ATPase subunit
    5.5e-05   20.2   0.0    9.3e-05   19.4   0.0    1.3  1  TIGR00382 clpX: ATP-dependent Clp protease, ATP-binding subunit ClpX
    0.00011   19.0   0.1      0.048   10.3   0.0    2.4  2  TIGR02928 TIGR02928: orc1/cdc6 family replication initiation protein
    0.00033   17.6   0.0     0.0012   15.8   0.0    1.9  2  TIGR02881 spore_V_K: stage V sporulation protein K
    0.00035   17.5   0.0    0.00062   16.7   0.0    1.3  1  TIGR00635 ruvB: Holliday junction DNA helicase RuvB
     0.0005   16.6   0.0    0.00089   15.7   0.0    1.4  1  TIGR03922 T7SS_EccA: type VII secretion AAA-ATPase EccA
     0.0022   15.4   0.0     0.0052   14.1   0.0    1.6  1  TIGR02640 gas_vesic_GvpN: gas vesicle protein GvpN
     0.0068   12.5   0.1      0.033   10.2   0.0    1.9  2  TIGR02639 ClpA: ATP-dependent Clp protease ATP-binding subunit ClpA
     0.0099   12.2   0.3      0.017   11.3   0.2    1.3  1  TIGR00763 lon: ATP-dependent protease La
  ------ inclusion threshold ------
      0.011   12.1   0.1      0.091    9.2   0.0    2.0  2  TIGR02902 spore_lonB: ATP-dependent protease LonB
      0.021   12.7   0.3      0.047   11.5   0.0    1.7  2  TIGR02173 cyt_kin_arch: putative cytidylate kinase
       0.05   10.0   0.0      0.094    9.1   0.0    1.4  1  TIGR00368 TIGR00368: Mg chelatase-like protein


Domain annotation for each model (and alignments):
>> TIGR01241  FtsH_fam: ATP-dependent metallopeptidase HflB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  638.0   0.0    9e-195  2.3e-192       4     495 ..      42     543 ..      39     544 .. 0.93

  Alignments for each domain:
  == domain 1    score: 638.0 bits;  conditional E-value: 9e-195
   TIGR01241   4 evllsllplilllvglfllflrq..akgaggsrifslgkskaklleeekvkvtfkdvaGideakeelveivdfLknpkkftklGakiPkGvllvGpPGtGktLlakavaGeagvpffsisGsdfvemfvGvGasrvrDlfeqakknaPciifiDeiDavGrkrgag.....lgggndereqtLnqlLvemDGfetnegvivlaatnrpdvLDkaLlrPGrfDrqvvvdkPdlkgreeilkvhakkvklaeevdlkkvarrtpGfsGadlanlvneaallaarknkkevtlkeleeavdrviaGlekksrvis.ekekklvayheaGhalvgllvkeadkvkkvtiiprGq.alGvtlslPee...dklllskkellakiavllgGrvaeeiifg..evttGasnDlkkatkiaramvtelGmseklgavayeeeeeevllgkelkkekeyseetakeiDeevkriieeaykkakeilkekkeelellakeLleketiekeelkell 495
                 +vl +l + +l++ glf+l +r+  + g gg + ++lgksk+k+++e ++ vtf+dvaG+d  k el e+vdfLk+p+k+++lGak+P+Gvl+ GpPGtGktLla+avaGeagvpf+s sGs+fvemfvGvGasrvrDlf +akk aPciifiDeiDavGr+r a+      gggndereqtLnq+L+emDGfe+neg+iv++atnr+d+LD+aLlrPGrfDr+v vd+Pd +gre+il+vha ++ l+  v+l  va rt+GfsGa lanl+neaa++aar+nk+++t +e++ a+dr ++Gl+k s       +++lvayheaGha++gl+++e d v+kvtiipr + a+G+tl++P++   ++ l+sk+ l+a++av+lgGrvaeei+fg  evttGasnDl++  ++ar+mv+++G++   g v +   + e+  +    + +++se+t ++iDeev+++ +eay ++++ l+ ++  l++la++L+e et++ +el ++l
  MMETSP1137-20121227|7450_1  42 GVLANLAFPLLIIGGLFFLQRRNggMGGPGGMNPLDLGKSKSKIQMEPQTGVTFEDVAGCDASKLELEEVVDFLKKPDKYSALGAKVPRGVLMEGPPGTGKTLLARAVAGEAGVPFISCSGSEFVEMFVGVGASRVRDLFRKAKKVAPCIIFIDEIDAVGRTRPAAggggpGGGGNDEREQTLNQILTEMDGFEGNEGIIVISATNRADILDPALLRPGRFDRRVPVDLPDKAGREAILAVHAANKPLD-GVSLPLVAARTTGFSGAALANLLNEAAIMAARRNKTSITYDEVDYAIDRLVVGLQKSSEKTPiTSRQRLVAYHEAGHAVMGLVTPEYDAVTKVTIIPRSNgAGGFTLFTPSDeqlESGLYSKRYLQAQLAVALGGRVAEEIVFGeeEVTTGASNDLQQLRSVARRMVAQWGFTT--GDVDIGLVGWEAPDAG-RFSPRTLSEDTETRIDEEVRKLADEAYASCMKALTAHRPLLDALAERLVEVETVDGDELLQML 543
                 67778877899999**9999988444555666799********************************************************************************************************************************764333455789*************************************************************************7.69******************************************************9987641567789*******************************9**********94455679*************************999*************************98..7777776555554444.467889***************************************************998876 PP

>> TIGR01242  26Sp45: 26S proteasome subunit P45 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  244.3   0.2   1.7e-75   4.5e-73     112     363 ..      86     340 ..      75     341 .. 0.94

  Alignments for each domain:
  == domain 1    score: 244.3 bits;  conditional E-value: 1.7e-75
   TIGR01242 112 eveerpevsyediGGlekqlreireavelplkkpelfeevGieppkGvllyGppGtGktllakavaeetnatfirvvgselvkkyiGeGarlvrevfklakekapsiifideidaiaakrldsst.....sGdrevqrtllqllaeldGfdprgnvkviaatnrldildpallrpGrfdrlievplpdleGrleilkihtrkmklaedvdleelaklteGasGadlkaivteaGmfaireerdkvtmedflkavekv 363
                 ++e +  v++ed+ G +    e++e+v++ lkkp+ +  +G + p+Gvl+ GppGtGktlla+ava e+   fi   gse+v+ ++G Ga+ vr++f+ ak+ ap+iifideida++  r  +       +G+ e ++tl q+l+e+dGf+  + + vi+atnr dildpallrpGrfdr + v lpd+ Gr  il +h+ +  l + v l  +a  t G+sGa l  +  ea ++a r++++ +t +++  a++++
  MMETSP1137-20121227|7450_1  86 QMEPQTGVTFEDVAGCDASKLELEEVVDF-LKKPDKYSALGAKVPRGVLMEGPPGTGKTLLARAVAGEAGVPFISCSGSEFVEMFVGVGASRVRDLFRKAKKVAPCIIFIDEIDAVGRTRPAAGGggpggGGNDEREQTLNQILTEMDGFEGNEGIIVISATNRADILDPALLRPGRFDRRVPVDLPDKAGREAILAVHAANKPLDG-VSLPLVAARTTGFSGAALANLLNEAAIMAARRNKTSITYDEVDYAIDRL 340
                 5667788******************9997.9**************************************************************************************99998765112216799********************************************************************99988.*********************************************9986 PP

>> TIGR01243  CDC48: AAA family ATPase, CDC48 subfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  218.6   0.1   1.3e-67   3.3e-65     449     688 ..      92     336 ..      84     389 .. 0.91

  Alignments for each domain:
  == domain 1    score: 218.6 bits;  conditional E-value: 1.3e-67
   TIGR01243 449 nvkwediggleevkqelreavewplkakevfeklgirppkgvllfgppgtgktllakavatesganfiavrgpeilskwvgesekaireifrkarqaapaiifldeidaiapargadl.......seavtdrivnqllteldgleensdvvviaatnrpdildpallrpgrldrlilvpapdeearleifkihtrslplaedvdleelakktegytgadieavvreaalaalresvksvakekleae 688
                  v +ed+ g +  k el e v++ lk+++ +  lg + p+gvl+ gppgtgktlla+ava e+g  fi+  g e +  +vg    ++r++frka++ ap+iif+deida+  +r a         ++   ++ +nq+lte+dg+e n++++vi+atnr dildpallrpgr+dr + v  pd+  r  i+ +h+ + pl + v l  +a +t g++ga ++ +  eaa++a r+   s++ + ++  
  MMETSP1137-20121227|7450_1  92 GVTFEDVAGCDASKLELEEVVDF-LKKPDKYSALGAKVPRGVLMEGPPGTGKTLLARAVAGEAGVPFISCSGSEFVEMFVGVGASRVRDLFRKAKKVAPCIIFIDEIDAVGRTRPAAGgggpgggGNDEREQTLNQILTEMDGFEGNEGIIVISATNRADILDPALLRPGRFDRRVPVDLPDKAGREAILAVHAANKPL-DGVSLPLVAARTTGFSGAALANLLNEAAIMAARRNKTSITYDEVDYA 336
                 5899*****************98.99************************************************************************************8776444311111114557789******************************************************************9.78*******************************99999888777665 PP

>> TIGR03689  pup_AAA: proteasome ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  134.7   0.1   3.3e-42   8.3e-40     170     384 ..      84     289 ..      78     340 .. 0.83

  Alignments for each domain:
  == domain 1    score: 134.7 bits;  conditional E-value: 3.3e-42
   TIGR03689 170 elvleevPdvtyadiGGldsqieqirdavelPflhkelyreydlkpPkGvllyGPPGcGktliakavanslaekvaedgeaksyflnikGPellnkyvGeterqirliferarekaaegrPvvvffdemdslfrtr........GsGvssdvettvvPqllaeldGveslenviviGasnredlidPailrPGrldvkirierPdaeaaadilakyltedlPl 384
                 ++ +e    vt++d+ G d    ++ + v++ +++++ y + + k P+Gvl+ GPPG+Gktl+a+ava            a   f++  G e+++ +vG    ++r +f +a++ a    P ++f+de+d++ rtr        G G   d     + q+l+e+dG e  e +ivi a+nr d++dPa+lrPGr+d ++ ++ Pd+++ ++ila + +++ Pl
  MMETSP1137-20121227|7450_1  84 KIQMEPQTGVTFEDVAGCDASKLELEEVVDF-LKKPDKYSALGAKVPRGVLMEGPPGTGKTLLARAVAGE----------AGVPFISCSGSEFVEMFVGVGASRVRDLFRKAKKVA----PCIIFIDEIDAVGRTRpaaggggpG-GGGNDEREQTLNQILTEMDGFEGNEGIIVISATNRADILDPALLRPGRFDRRVPVDLPDKAGREAILAVHAANK-PL 289
                 556677778**********999999999986.6789*******************************964..........3457**************************999987....****************777543211.345677777889********************************************************997653.33 PP

>> TIGR00390  hslU: ATP-dependent protease HslVU, ATPase subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.2   0.0     5e-08   1.3e-05      46     106 ..     128     186 ..     123     189 .. 0.91
   2 ?    0.2   0.1      0.23        58     249     261 ..     190     202 ..     184     210 .. 0.82

  Alignments for each domain:
  == domain 1    score: 22.2 bits;  conditional E-value: 5e-08
   TIGR00390  46 vPknilmiGstGvGkteiarrlaklaeaPfikveatkftevGyvGrdveslvrdlvdaavk 106
                 vP+ +lm G+ G Gkt +ar +a  a++Pfi    + f e+ +vG    s vrdl  +a k
  MMETSP1137-20121227|7450_1 128 VPRGVLMEGPPGTGKTLLARAVAGEAGVPFISCSGSEFVEM-FVGVG-ASRVRDLFRKAKK 186
                 799*************************************7.99976.5899**9988765 PP

  == domain 2    score: 0.2 bits;  conditional E-value: 0.23
   TIGR00390 249 Giifideidkiak 261
                  iifideid + +
  MMETSP1137-20121227|7450_1 190 CIIFIDEIDAVGR 202
                 69*******9875 PP

>> TIGR00382  clpX: ATP-dependent Clp protease, ATP-binding subunit ClpX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.0   3.6e-07   9.3e-05     120     197 ..     132     203 ..     124     208 .. 0.86

  Alignments for each domain:
  == domain 1    score: 19.4 bits;  conditional E-value: 3.6e-07
   TIGR00382 120 illiGptGsGktllaqtlakeldvpfaiadattlteaGyvGedvenillkllqaadydvekaekGiiyideidkiark 197
                 +l+ Gp G+Gktlla+++a e  vpf  +  + + e  +vG     +   l+++a    +k    ii+ideid + r 
  MMETSP1137-20121227|7450_1 132 VLMEGPPGTGKTLLARAVAGEAGVPFISCSGSEFVEM-FVGVGASRV-RDLFRKA----KKVAPCIIFIDEIDAVGRT 203
                 6788**********************99999999885.899877664.6677766....578899*********9986 PP

>> TIGR02928  TIGR02928: orc1/cdc6 family replication initiation protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.3   0.0   0.00019     0.048      34      61 ..     123     150 ..     107     155 .. 0.85
   2 !    6.2   0.0    0.0035      0.89     234     320 ..     298     379 ..     285     390 .. 0.68

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 0.00019
   TIGR02928  34 ilrgsrpsnvliyGktGtGKtavtkkvl 61 
                 +l  + p+ vl+ G++GtGKt+ +++v 
  MMETSP1137-20121227|7450_1 123 ALGAKVPRGVLMEGPPGTGKTLLARAVA 150
                 566788******************9987 PP

  == domain 2    score: 6.2 bits;  conditional E-value: 0.0035
   TIGR02928 234 aaqehGdaRkAi.dlLreageiAeeegsekvteehvekAqekiekerllelirglpthsklvLlaiaalakkeedevrtgevyevYke 320
                 aa+++G    A+ +lL ea+ +A +++++++t ++v+ A +++ +  l+++ +++p+ s++ L+a       e   + +g v  +Y  
  MMETSP1137-20121227|7450_1 298 AARTTGFSGAALaNLLNEAAIMAARRNKTSITYDEVDYAIDRLVVG-LQKSSEKTPITSRQRLVAYH-----EAGHAVMGLVTPEYDA 379
                 344444444555379************************9998654.44555566666666666655.....3444555555555555 PP

>> TIGR02881  spore_V_K: stage V sporulation protein K
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0   4.5e-06    0.0012      44     119 ..     131     202 ..      95     269 .. 0.83
   2 ?   -1.9   0.0       1.2     3e+02     141     201 ..     495     557 ..     477     584 .. 0.64

  Alignments for each domain:
  == domain 1    score: 15.8 bits;  conditional E-value: 4.5e-06
   TIGR02881  44 hmifkGnPGtGkttvarllaklfkelnvlskGhlieveradlvGeyiGhtaqktrevikkal...GGvlfideayslar 119
                  ++++G PGtGkt +ar +a    e +v     +i    +++v  ++G  a ++r++ +ka+     ++fide  ++ r
  MMETSP1137-20121227|7450_1 131 GVLMEGPPGTGKTLLARAVAG---EAGV----PFISCSGSEFVEMFVGVGASRVRDLFRKAKkvaPCIIFIDEIDAVGR 202
                 46789************9985...7776....5899999******************99886222589*****988876 PP

  == domain 2    score: -1.9 bits;  conditional E-value: 1.2
   TIGR02881 141 reelvlila..GysdemdyflslnPGlksrfpisldfpdytveelleiakkmveereykltee 201
                  +e v  la   y + m+ +    P l +     ++ +  + +ell+++k+   +    l ++
  MMETSP1137-20121227|7450_1 495 IDEEVRKLAdeAYASCMKALTAHRPLLDALAERLVEVETVDGDELLQMLKQYDADLSASLNKR 557
                 555555554224777788888888888877777788888888888888888776666666554 PP

>> TIGR00635  ruvB: Holliday junction DNA helicase RuvB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0   2.4e-06   0.00062      32      95 ..     131     202 ..     121     205 .. 0.71

  Alignments for each domain:
  == domain 1    score: 16.7 bits;  conditional E-value: 2.4e-06
   TIGR00635  32 hvllyGPPGlGkttlakiiakelgvklkitsgpal.........ekpgDlaailtaleegdvlfiDeihrlsk 95 
                  vl+ GPPG Gkt la+ +a e gv     sg ++         ++ +Dl     ++ +  ++fiDei ++ +
  MMETSP1137-20121227|7450_1 131 GVLMEGPPGTGKTLLARAVAGEAGVPFISCSGSEFvemfvgvgaSRVRDLFRKAKKVAP-CIIFIDEIDAVGR 202
                 589*********************99988888876222222222355555555555443.5889999988765 PP

>> TIGR03922  T7SS_EccA: type VII secretion AAA-ATPase EccA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   3.5e-06   0.00089     313     390 ..     130     203 ..      96     256 .. 0.75

  Alignments for each domain:
  == domain 1    score: 15.7 bits;  conditional E-value: 3.5e-06
   TIGR03922 313 kHlllaGPPGtGkttiArvvakiyaGlgvlrkpevrEvsRadligeyigeseaktnelidkaLg...gvlFlDEayaLvek 390
                 + +l+ GPPGtGkt +Ar+va   aG+  +        s ++++  ++g  + +  +l  ka      ++F+DE+ a+  +
  MMETSP1137-20121227|7450_1 130 RGVLMEGPPGTGKTLLARAVAGE-AGVPFI------SCSGSEFVEMFVGVGASRVRDLFRKAKKvapCIIFIDEIDAVGRT 203
                 567999**************975.676554......467788888888888888888877775422257888887776555 PP

>> TIGR02640  gas_vesic_GvpN: gas vesicle protein GvpN
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.0     2e-05    0.0052      19      56 ..     127     164 ..     107     181 .. 0.84

  Alignments for each domain:
  == domain 1    score: 14.1 bits;  conditional E-value: 2e-05
   TIGR02640  19 ksgypvhlrGPaGtGktslalhvakkrdrPvvllnGda 56 
                 k+ + v + GP GtGkt la++va + + P +   G +
  MMETSP1137-20121227|7450_1 127 KVPRGVLMEGPPGTGKTLLARAVAGEAGVPFISCSGSE 164
                 45677899**********************99998876 PP

>> TIGR02639  ClpA: ATP-dependent Clp protease ATP-binding subunit ClpA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.2   0.0   0.00013     0.033     486     526 ..     129     168 ..     108     173 .. 0.87
   2 ?   -0.5   0.0      0.23        58     264     290 ..     175     201 ..     168     214 .. 0.79

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 0.00013
   TIGR02639 486 PvgsflfvGptGvGktelakqLaeelgvellrfDmseymek 526
                 P g  l+ Gp G Gkt la+++a e gv ++    se+ e 
  MMETSP1137-20121227|7450_1 129 PRG-VLMEGPPGTGKTLLARAVAGEAGVPFISCSGSEFVEM 168
                 444.4789*****************************9985 PP

  == domain 2    score: -0.5 bits;  conditional E-value: 0.23
   TIGR02639 264 erlkevveeiekeedailfiDeihtiv 290
                  r++++ ++ +k    i+fiDei ++ 
  MMETSP1137-20121227|7450_1 175 SRVRDLFRKAKKVAPCIIFIDEIDAVG 201
                 6889999999999999*******9874 PP

>> TIGR00763  lon: ATP-dependent protease La
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.3   0.2   6.8e-05     0.017     356     434 ..     132     202 ..     109     212 .. 0.80

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 6.8e-05
   TIGR00763 356 lclvGPPGVGKtSlaksiAkalnrkfvrlslGGlkDvaeikGHRrtYvGalPGkiiqglkkvktenP.lillDEiDKlgs 434
                 + + GPPG GKt la+++A   +  f+  s  G + v         +vG    ++ + ++k+k+  P +i++DEiD +g+
  MMETSP1137-20121227|7450_1 132 VLMEGPPGTGKTLLARAVAGEAGVPFISCS--GSEFVE-------MFVGVGASRVRDLFRKAKKVAPcIIFIDEIDAVGR 202
                 4689********************997655..655443.......57777778999999999999984567999999885 PP

>> TIGR02902  spore_lonB: ATP-dependent protease LonB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   0.0   0.00036     0.091      80     117 ..     123     160 ..     116     183 .. 0.74
   2 ?    0.4   0.0      0.16        41     297     333 ..     305     341 ..     278     393 .. 0.73

  Alignments for each domain:
  == domain 1    score: 9.2 bits;  conditional E-value: 0.00036
   TIGR02902  80 alcGpnpqhviiyGppGvGktaaarlvleeakksaasp 117
                 al    p+ v++ GppG Gkt  ar v  ea     s 
  MMETSP1137-20121227|7450_1 123 ALGAKVPRGVLMEGPPGTGKTLLARAVAGEAGVPFISC 160
                 66677899*******************99986544443 PP

  == domain 2    score: 0.4 bits;  conditional E-value: 0.16
   TIGR02902 297 nGreavnlvqlaaGlalnenrkkilaediewviesgq 333
                 +G    nl++ aa +a+  n+ +i+ +++++ i+   
  MMETSP1137-20121227|7450_1 305 SGAALANLLNEAAIMAARRNKTSITYDEVDYAIDRLV 341
                 788889*************************997644 PP

>> TIGR02173  cyt_kin_arch: putative cytidylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   0.00018     0.047       4      31 ..     133     160 ..     131     168 .. 0.90
   2 ?   -3.6   0.0       8.4   2.2e+03      46      65 ..     322     341 ..     309     351 .. 0.58

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 0.00018
   TIGR02173   4 visGpPGsGkttvakilaeklslklisa 31 
                  + GpPG+Gkt +a+ +a + ++ +is+
  MMETSP1137-20121227|7450_1 133 LMEGPPGTGKTLLARAVAGEAGVPFISC 160
                 678**********************985 PP

  == domain 2    score: -3.6 bits;  conditional E-value: 8.4
   TIGR02173  46 aeskkaeeekeiDkkiDrki 65 
                   +k   + +e+D  iDr +
  MMETSP1137-20121227|7450_1 322 RRNKTSITYDEVDYAIDRLV 341
                 33444445556666666654 PP

>> TIGR00368  TIGR00368: Mg chelatase-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   0.0   0.00037     0.094     214     233 ..     132     151 ..      98     157 .. 0.91

  Alignments for each domain:
  == domain 1    score: 9.1 bits;  conditional E-value: 0.00037
   TIGR00368 214 llllGPPGsGktllakrlqg 233
                 +l+ GPPG+Gktlla+ + g
  MMETSP1137-20121227|7450_1 132 VLMEGPPGTGKTLLARAVAG 151
                 7899***********99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (696 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       211  (0.0514383); expected 82.0 (0.02)
Passed bias filter:                      180  (0.043881); expected 82.0 (0.02)
Passed Vit filter:                        50  (0.0121892); expected 4.1 (0.001)
Passed Fwd filter:                        16  (0.00390054); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              16  [number of targets reported over threshold]
# CPU time: 0.71u 0.18s 00:00:00.88 Elapsed: 00:00:00.84
# Mc/sec: 1093.62
//
Query:       MMETSP1137-20121227|7451_1  [L=192]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (192 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        36  (0.00877621); expected 82.0 (0.02)
Passed bias filter:                       28  (0.00682594); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.13s 00:00:00.31 Elapsed: 00:00:00.55
# Mc/sec: 460.76
//
Query:       MMETSP1137-20121227|7452_1  [L=456]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   3.7e-193  639.5   0.5   4.2e-193  639.3   0.4    1.0  1  TIGR02028 ChlP: geranylgeranyl reductase
   1.3e-146  486.4   0.0   1.5e-146  486.2   0.0    1.0  1  TIGR02023 BchP-ChlP: geranylgeranyl reductase
    1.2e-50  170.7   0.1    1.7e-50  170.2   0.1    1.1  1  TIGR02032 GG-red-SF: geranylgeranyl reductase family
    3.8e-08   30.4   0.0     0.0014   15.4   0.0    3.1  3  TIGR01988 Ubi-OHases: ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family
    2.7e-06   24.4   0.2     0.0022   14.8   0.0    2.4  3  TIGR01989 COQ6: ubiquinone biosynthesis monooxygenase COQ6
    1.6e-05   21.8   0.0    2.2e-05   21.3   0.0    1.2  1  TIGR01317 GOGAT_sm_gam: glutamate synthase, NADH/NADPH, small subunit
    1.7e-05   21.6   0.0    2.9e-05   20.9   0.0    1.3  1  TIGR01316 gltA: glutamate synthase (NADPH), homotetrameric
    0.00013   17.3   0.0     0.0002   16.7   0.0    1.2  1  TIGR03315 Se_ygfK: putative selenate reductase, YgfK subunit
    0.00051   16.8   0.0       0.66    6.5   0.0    3.0  3  TIGR01984 UbiH: 2-polyprenyl-6-methoxyphenol 4-hydroxylase
     0.0022   14.3   0.1      0.003   13.8   0.1    1.1  1  TIGR03997 mycofact_OYE_2: mycofactocin system FadH/OYE family oxidoreductase 2
     0.0035   14.4   0.0     0.0069   13.5   0.0    1.4  1  TIGR00292 TIGR00292: thiazole biosynthesis enzyme
     0.0035   13.8   0.0      0.006   13.0   0.0    1.3  1  TIGR01318 gltD_gamma_fam: glutamate synthase, small subunit
     0.0035   13.8   0.1       0.59    6.5   0.0    2.8  3  TIGR03219 salicylate_mono: salicylate 1-monooxygenase
  ------ inclusion threshold ------
      0.014   12.1   0.2      0.031   10.9   0.0    1.7  2  TIGR01292 TRX_reduct: thioredoxin-disulfide reductase
      0.014   11.8   0.0      0.023   11.1   0.0    1.2  1  TIGR00562 proto_IX_ox: protoporphyrinogen oxidase
      0.021   11.5   0.0       0.03   11.0   0.0    1.2  1  TIGR00275 TIGR00275: flavoprotein, HI0933 family


Domain annotation for each model (and alignments):
>> TIGR02028  ChlP: geranylgeranyl reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  639.3   0.4  1.7e-195  4.2e-193       1     398 []      36     435 ..      36     435 .. 0.97

  Alignments for each domain:
  == domain 1    score: 639.3 bits;  conditional E-value: 1.7e-195
   TIGR02028   1 lrvavvgggpagasaaetlaka.giqtfllerkldnakpcggaiplcmvdefdlprdiidrrvtkmkvispsniavdigrtlkeheyigmvrrevldsflreraadagatlinglvlklelpedaddpytlhyveedktgasgtkktlevdavigadgansrvakeidagdydyaiafqerirlpdekmayyedlaemyvgddvspdfygwvfpkcdhvavgtgtvaakdeikklqagiraraaakva.ggkiirveahpipehprprrvvgrvalvgdaagyvtkssgegiyfaaksgrlcaeaiveesrlgkkvieegd.lkkylkrwdkeyrptyrvldllqrvfyrsnaarealvemcadedvqkltfdsylykrvapaepledlkllvktigslvr 398
                 +rvav+gggp+ga+aae +aka   +t l+erk+dn+kpcggaiplcmv+efdlp++i+drrv+kmk+isps  +vd+grtlk++eyigm rrevld +lr+ra + ga+ +nglv ++elp+d +  yt++y +++ +   g     e d++igadgansr ak idag+y+yaiafqeri++pd+km yyedlaemyvgddvspdfy+wvfpk+dhv vgtgtv++++ i ++qa+ir+r+a+k+    k+++veahpipehprprrvvgrvalvgdaagyvtk+sgegiyfaaksgr+ ae iv  s++g ++++e++ +++y+k++d +y+pty+vldllq+vfy +n area+v+mca ++vqk+tfdsylyk+v   +p+ed+kll+ tigsl++
  MMETSP1137-20121227|7452_1  36 IRVAVIGGGPSGACAAEIFAKApNFETTLFERKMDNCKPCGGAIPLCMVEEFDLPPEIVDRRVRKMKMISPSGREVDVGRTLKPEEYIGMTRREVLDGYLRDRAIEYGAKPVNGLVQSIELPTDDSGAYTVKYSDYN-GKGKGVPAEAEFDIIIGADGANSRTAKAIDAGEYNYAIAFQERIKIPDDKMKYYEDLAEMYVGDDVSPDFYAWVFPKYDHVGVGTGTVINRPAIGEYQAAIRERCADKLGpNPKVMKVEAHPIPEHPRPRRVVGRVALVGDAAGYVTKCSGEGIYFAAKSGRMAAEEIVALSQGGTRIPTESEiKQTYIKKYDAKYGPTYLVLDLLQKVFYTNNGAREAFVDMCASDYVQKVTFDSYLYKTVQGNNPVEDVKLLFGTIGSLIK 435
                 69*******************9458**************************************************************************************************************99.4456777789***************************************************************************************************72579****************************************************************998761568*************************************************************************985 PP

>> TIGR02023  BchP-ChlP: geranylgeranyl reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  486.2   0.0  5.8e-149  1.5e-146       2     388 .]      37     435 ..      36     435 .. 0.95

  Alignments for each domain:
  == domain 1    score: 486.2 bits;  conditional E-value: 5.8e-149
   TIGR02023   2 dvlviGggpsGaaaaetLaka.gievillerelarikPCGGaiPlalieefdlPedlidrrvrkakvisPs..aveikvdlpveeeyvgmvrrevfDeyLreraqkaGaeliegllkklerded...kltleyrekekeageekksveadvviGaDGakskvakelglgknlkkvialqeriklpdeklkyyeeladvyldgevsPDfYgWvfPkgdhiavGvGtethktdikkllaalrrkag..l.aggktirreaapiPlkPrkrldservvLvGDaaGlvakasGeGiyyamksGklaaeaivealksg.....datdLrkyekkfmklyktvfrvLrvlqkvyYrsdkrrekfvelCrdkdvqkltfdsYlykklvpasklaqlklalkniaslvr 388
                 +v+viGggpsGa aae+ aka + e+ l+er+++++kPCGGaiPl+++eefdlP +++drrvrk+k+isPs  +v++ ++l+  eey+gm rrev+D yLr+ra + Ga+ ++gl++ +e ++d    +t++y +++ +  +     e d++iGaDGa+s++ak++++g +++++ia+qerik+pd+k+kyye+la++y++++vsPDfY+WvfPk dh+ vG+Gt++++ +i + +aa+r++    l  + k++++ea+piP++Pr+r+  +rv+LvGDaaG+v+k+sGeGiy+a+ksG++aae iv+ ++ g     + +  ++y kk++++y++++ vL++lqkv+Y ++ +re+fv++C   +vqk+tfdsYlyk +  +++++++kl + +i+sl++
  MMETSP1137-20121227|7452_1  37 RVAVIGGGPSGACAAEIFAKApNFETTLFERKMDNCKPCGGAIPLCMVEEFDLPPEIVDRRVRKMKMISPSgrEVDVGRTLK-PEEYIGMTRREVLDGYLRDRAIEYGAKPVNGLVQSIELPTDdsgAYTVKYSDYNGKGKGVPAEAEFDIIIGADGANSRTAKAIDAG-EYNYAIAFQERIKIPDDKMKYYEDLAEMYVGDDVSPDFYAWVFPKYDHVGVGTGTVINRPAIGEYQAAIRERCAdkLgPNPKVMKVEAHPIPEHPRPRRVVGRVALVGDAAGYVTKCSGEGIYFAAKSGRMAAEEIVALSQGGtriptESEIKQTYIKKYDAKYGPTYLVLDLLQKVFYTNNGAREAFVDMCASDYVQKVTFDSYLYKTVQGNNPVEDVKLLFGTIGSLIK 435
                 8******************98689***********************************************8889999***9.99**********************************988777789******997777777777999********************.9**********************************************************************9986641467999*********************************************************88999955666688*************************************************************************986 PP

>> TIGR02032  GG-red-SF: geranylgeranyl reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  170.2   0.1   6.7e-53   1.7e-50       3     297 .]      38     340 ..      37     340 .. 0.82

  Alignments for each domain:
  == domain 1    score: 170.2 bits;  conditional E-value: 6.7e-53
   TIGR02032   3 vvvvGaGpaGssaAlrlakk.GlrVlllekkelprekeCggalskraveelelpkelivnevrkariispngekveieee...eeealvidRkefDelLaekAqeagaelllettvlsveied.......ekvkvevred.ekkevtakivigAdGakskvakklglkkekrelavalraeveeeveeevdedsvevyidkglvpggYgWvfPkgdgtanvGvgvlseekedlkkklkeflaerpeklkd.aeevevkgaliPirradektvtgnvllvGDAAglVkPltGeGIayamvagklAaevv 297
                 v v+G+Gp+G+ aA+  ak+  +++ l+e+k +   k+Cgga++   vee++lp+e +  +vrk ++isp+g++v++ +    ee+  + +R+++D +L ++A e ga+   +     +   d       ++   + +++ +  e + +i+igAdGa+s++ak+++  + ++ +a++ r++++ + ++++ ed +e+y++++++p++Y+WvfPk d+ + vG+g+   +   + ++  +  ++  +kl    + ++v++++iP   ++ ++v g+v lvGDAAg V   +GeGI++a+++g++Aae +
  MMETSP1137-20121227|7452_1  38 VAVIGGGPSGACAAEIFAKApNFETTLFERK-MDNCKPCGGAIPLCMVEEFDLPPEIVDRRVRKMKMISPSGREVDVGRTlkpEEYIGMTRREVLDGYLRDRAIEYGAKPVNGLVQSIELPTDdsgaytvKYSDYNGKGKgVPAEAEFDIIIGADGANSRTAKAIDAGEYNYAIAFQERIKIPDD-KMKYYEDLAEMYVGDDVSPDFYAWVFPKYDH-VGVGTGTVI-NRPAIGEYQAAIRERCADKLGPnPKVMKVEAHPIPEH-PRPRRVVGRVALVGDAAGYVTKCSGEGIYFAAKSGRMAAEEI 340
                 679************99987469*******9.6667********************99999***********9999888888899************************66555444443344686644333333333334555666789****************9999999999999999999.99****************************8.888888875.444444444444444444444325789999999**98.666666777******************************986 PP

>> TIGR01988  Ubi-OHases: ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.3   0.0    0.0015      0.39       2      33 ..      38      69 ..      37     144 .. 0.91
   2 ?    4.1   0.0     0.014       3.7     155     172 ..     185     202 ..     165     210 .. 0.86
   3 !   15.4   0.0   5.3e-06    0.0014     241     358 ..     269     387 ..     266     392 .. 0.91

  Alignments for each domain:
  == domain 1    score: 7.3 bits;  conditional E-value: 0.0015
   TIGR01988  2 ivIvGgGlvGlalAlaLassadlkvalveaka 33
                ++++GgG+ G+  A  +a+ ++ +++l+e+k 
  MMETSP1137-20121227|7452_1 38 VAVIGGGPSGACAAEIFAKAPNFETTLFERKM 69
                89****************999*******9874 PP

  == domain 2    score: 4.1 bits;  conditional E-value: 0.014
   TIGR01988 155 kLlvgADGanSkvrqaag 172
                 ++++gADGanS +++a+ 
  MMETSP1137-20121227|7452_1 185 DIIIGADGANSRTAKAID 202
                 689********9999865 PP

  == domain 3    score: 15.4 bits;  conditional E-value: 5.3e-06
   TIGR01988 241 flaelnaafgsrlgaitlvgeraafPLslthakryvaervaliGdAAhtvhPlAGQGlNlGlrDvaaLaevlaeavergedigslavL.krYererradnaallaatdllnrlfsndfp 358
                 ++a++ +++  +lg    v + +a P+  +   r v  rval+GdAA  v    G G+ +  +  +  ae +++  + g  i + + + + Y ++  a+  +++ ++dll+++f +++ 
  MMETSP1137-20121227|7452_1 269 YQAAIRERCADKLGPNPKVMKVEAHPIPEHPRPRRVVGRVALVGDAAGYVTKCSGEGIYFAAKSGRMAAEEIVALSQGGTRIPTESEIkQTYIKKYDAKYGPTYLVLDLLQKVFYTNNG 387
                 56788899999999999999999999999999***********************************************999877666268***********************98875 PP

>> TIGR01989  COQ6: ubiquinone biosynthesis monooxygenase COQ6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.0   0.1       4.4   1.1e+03       3      23 ..      38      58 ..      38      62 .. 0.75
   2 !    7.2   0.0    0.0017      0.44     168     198 ..     180     208 ..     135     212 .. 0.73
   3 !   14.8   0.0   8.7e-06    0.0022     331     414 ..     304     388 ..     287     396 .. 0.92

  Alignments for each domain:
  == domain 1    score: -4.0 bits;  conditional E-value: 4.4
   TIGR01989  3 vvivGgGlvGlalAaalkknp 23
                v++ GgG+ G+  A  ++k p
  MMETSP1137-20121227|7452_1 38 VAVIGGGPSGACAAEIFAKAP 58
                6899******98776666655 PP

  == domain 2    score: 7.2 bits;  conditional E-value: 0.0017
   TIGR01989 168 etlktklliGADGanSkvRkaanikvtgwnY 198
                  + + +++iGADGanS +     i+   +nY
  MMETSP1137-20121227|7452_1 180 AEAEFDIIIGADGANSRTA--KAIDAGEYNY 208
                 5567789*********665..5677777887 PP

  == domain 3    score: 14.8 bits;  conditional E-value: 8.7e-06
   TIGR01989 331 vtervALvGDAAHrvHPLAGqGvNlGfsDvesLvkalaeavkeGadlGsvssLk.kyererkakNvallalvdklkklYstdfpp 414
                 v  rvALvGDAA  v    G G+    +  ++ ++ + +  + G+ +   s +k  y ++  ak  +  +++d+l+k++ t++++
  MMETSP1137-20121227|7452_1 304 VVGRVALVGDAAGYVTKCSGEGIYFAAKSGRMAAEEIVALSQGGTRIPTESEIKqTYIKKYDAKYGPTYLVLDLLQKVFYTNNGA 388
                 678***********************************999******9888875269999999*****************99876 PP

>> TIGR01317  GOGAT_sm_gam: glutamate synthase, NADH/NADPH, small subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3   0.0   8.6e-08   2.2e-05     145     224 ..      37     121 ..      29     191 .. 0.84

  Alignments for each domain:
  == domain 1    score: 21.3 bits;  conditional E-value: 8.6e-08
   TIGR01317 145 kvavvGsGPaGlaaadqlnraG.htvtvfere.dr...vGGllryG.iPnlkldkeiverridlleaeGvdfvtnveiGkdisaee 224
                 +vav+G GP+G  aa+ +++a   + t+fer+ d    +GG +    + ++ l  eiv+rr+ +++        +v++G+++ +ee
  MMETSP1137-20121227|7452_1  37 RVAVIGGGPSGACAAEIFAKAPnFETTLFERKmDNckpCGGAIPLCmVEEFDLPPEIVDRRVRKMKMISPSG-REVDVGRTLKPEE 121
                 79*******************626899***97444333799887652789*************999765443.4677777777766 PP

>> TIGR01316  gltA: glutamate synthase (NADPH), homotetrameric
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   0.0   1.1e-07   2.9e-05     134     197 ..      36     105 ..      22     123 .. 0.79

  Alignments for each domain:
  == domain 1    score: 20.9 bits;  conditional E-value: 1.1e-07
   TIGR01316 134 kkvaviGaGpaGlavaselakk.Ghevtvfeal...hkp.GGvla.yGipefrlpkeivetevkklkklG 197
                  +vaviG Gp+G + a+  ak+  +e t+fe      kp GG +    + ef lp eiv+  v+k+k++ 
  MMETSP1137-20121227|7452_1  36 IRVAVIGGGPSGACAAEIFAKApNFETTLFERKmdnCKPcGGAIPlCMVEEFDLPPEIVDRRVRKMKMIS 105
                 69**********8888888998469******74222477566665156789****************985 PP

>> TIGR03315  Se_ygfK: putative selenate reductase, YgfK subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0     8e-07    0.0002     538     607 ..      36     114 ..      12     123 .. 0.71

  Alignments for each domain:
  == domain 1    score: 16.7 bits;  conditional E-value: 8e-07
   TIGR03315 538 hkvaviGaGPaGlsagyflara.Glpvtvfekkek....agGvvk.niiPefrisaeviqkdl...elvkkkGvefklG 607
                  +vaviG+GP+G +a+ ++a+a   + t+fe+k +     gG +   ++ ef ++ e++++ +   +++   G e+ +G
  MMETSP1137-20121227|7452_1  36 IRVAVIGGGPSGACAAEIFAKApNFETTLFERKMDnckpCGGAIPlCMVEEFDLPPEIVDRRVrkmKMISPSGREVDVG 114
                 48***********9999998883689*****99752222467765257889******9987651115555566666555 PP

>> TIGR01984  UbiH: 2-polyprenyl-6-methoxyphenol 4-hydroxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.0     0.013       3.3       2      33 ..      38      69 ..      37      75 .. 0.91
   2 ?    2.3   0.0      0.05        13     151     171 ..     184     204 ..     165     224 .. 0.80
   3 !    6.5   0.0    0.0026      0.66     238     296 ..     268     326 ..     262     382 .. 0.91

  Alignments for each domain:
  == domain 1    score: 4.2 bits;  conditional E-value: 0.013
   TIGR01984  2 viivGgglvGlslAlaLsrksklkialieaks 33
                v+++Ggg++G+  A  +++  +++++l+e k 
  MMETSP1137-20121227|7452_1 38 VAVIGGGPSGACAAEIFAKAPNFETTLFERKM 69
                89*****************99*******9875 PP

  == domain 2    score: 2.3 bits;  conditional E-value: 0.05
   TIGR01984 151 akLlvaAdGanskvreslsia 171
                  ++++ AdGans+ ++++ + 
  MMETSP1137-20121227|7452_1 184 FDIIIGADGANSRTAKAIDAG 204
                 5799*********99987654 PP

  == domain 3    score: 6.5 bits;  conditional E-value: 0.0026
   TIGR01984 238 eflaeLqkafgerlGkitqvgerkaypLklviaeeqvkervvlignaAqtlhPiAgQGf 296
                 e+ a+++++   +lG   +v + +a+p+  + + + v  rv+l+g+aA  +   +g G+
  MMETSP1137-20121227|7452_1 268 EYQAAIRERCADKLGPNPKVMKVEAHPIPEHPRPRRVVGRVALVGDAAGYVTKCSGEGI 326
                 678889999999999999******************************98877777775 PP

>> TIGR03997  mycofact_OYE_2: mycofactocin system FadH/OYE family oxidoreductase 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.1   1.2e-05     0.003     371     424 ..      26      85 ..       7     124 .. 0.67

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 1.2e-05
   TIGR03997 371 vtlkkarrr.kkvlvvGgGPaGleaaataa.rrGhrvtllereee....lGGqvklaakl 424
                 +++++a  r  +v v+GgGP+G  aa+  a +   + tl+er+       GG++ l++  
  MMETSP1137-20121227|7452_1  26 AAIQMALDRpIRVAVIGGGPSGACAAEIFAkAPNFETTLFERKMDnckpCGGAIPLCMVE 85 
                 455666555589************99876615679******9864222268888877654 PP

>> TIGR00292  TIGR00292: thiazole biosynthesis enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   0.0   2.7e-05    0.0069      24      55 ..      38      70 ..      25      83 .. 0.87

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 2.7e-05
   TIGR00292 24 viivGaGpsGLtaayylakeg.lkvvvlerkla 55
                v+++G+GpsG  aa ++ak+  + + ++erk+ 
  MMETSP1137-20121227|7452_1 38 VAVIGGGPSGACAAEIFAKAPnFETTLFERKMD 70
                89*****************988********985 PP

>> TIGR01318  gltD_gamma_fam: glutamate synthase, small subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   0.0   2.4e-05     0.006     130     200 ..      24     100 ..      18     124 .. 0.70

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 2.4e-05
   TIGR01318 130 wrpdlskvkktgkrvaviGaGpaGlacadvlara.Gvkvvvfdrype....iGGlltfG.ipsfkldkavlarrrei 200
                  r  +    ++  rvaviG+Gp+G + a+++a+a   ++++f+r  +     GG + +  +  f l  +++ rr + 
  MMETSP1137-20121227|7452_1  24 HRAAIQMALDRPIRVAVIGGGPSGACAAEIFAKApNFETTLFERKMDnckpCGGAIPLCmVEEFDLPPEIVDRRVRK 100
                 5666666777889************99*****993478999998754222256766554245677777777777554 PP

>> TIGR03219  salicylate_mono: salicylate 1-monooxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.5   0.0    0.0023      0.59       1      32 [.      36      67 ..      36      76 .. 0.92
   2 ?   -0.8   0.0      0.37        96     145     164 ..     181     200 ..     176     210 .. 0.82
   3 ?    3.6   0.0     0.018       4.6     295     313 ..     301     319 ..     285     332 .. 0.79

  Alignments for each domain:
  == domain 1    score: 6.5 bits;  conditional E-value: 0.0023
   TIGR03219  1 lrvaiiGGGiaGvalalelsksshlnvklfea 32
                +rva+iGGG +G   a  ++k +  + +lfe 
  MMETSP1137-20121227|7452_1 36 IRVAVIGGGPSGACAAEIFAKAPNFETTLFER 67
                79**********99999999**********95 PP

  == domain 2    score: -0.8 bits;  conditional E-value: 0.37
   TIGR03219 145 eyradlligadGiksalrdy 164
                 e++ d++igadG +s + + 
  MMETSP1137-20121227|7452_1 181 EAEFDIIIGADGANSRTAKA 200
                 6789*********9987665 PP

  == domain 3    score: 3.6 bits;  conditional E-value: 0.018
   TIGR03219 295 pgyvhGrvaliGdaahaml 313
                 p  v Grval+Gdaa  + 
  MMETSP1137-20121227|7452_1 301 PRRVVGRVALVGDAAGYVT 319
                 67789*********97655 PP

>> TIGR01292  TRX_reduct: thioredoxin-disulfide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00012     0.031       2      35 ..      37      71 ..      36      88 .. 0.85
   2 ?   -3.9   0.1       3.9     1e+03     270     296 ..     314     340 ..     314     341 .. 0.85

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 0.00012
   TIGR01292  2 dviiiGaGpaGltaa.iYaaranlktlliegkeag 35
                +v++iG+Gp+G  aa i+a+  n++t l+e+k+ +
  MMETSP1137-20121227|7452_1 37 RVAVIGGGPSGACAAeIFAKAPNFETTLFERKMDN 71
                689********987769*************98765 PP

  == domain 2    score: -3.9 bits;  conditional E-value: 3.9
   TIGR01292 270 aaGDvrdkslrQvvtaagdGaiAalsv 296
                 aaG v++ s + +  aa +G +Aa ++
  MMETSP1137-20121227|7452_1 314 AAGYVTKCSGEGIYFAAKSGRMAAEEI 340
                 788899989999999999999999875 PP

>> TIGR00562  proto_IX_ox: protoporphyrinogen oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0     9e-05     0.023       4      36 ..      37      68 ..      35      83 .. 0.89

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 9e-05
   TIGR00562  4 kvvvvGgGisGLciayalekerpdvelvlvEak 36
                 v+v+GgG sG c+a  ++k  p+ e +l+E k
  MMETSP1137-20121227|7452_1 37 RVAVIGGGPSGACAAEIFAKA-PNFETTLFERK 68
                59*****************99.*********86 PP

>> TIGR00275  TIGR00275: flavoprotein, HI0933 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00012      0.03       1      30 [.      38      68 ..      38      73 .. 0.85

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 0.00012
   TIGR00275  1 viiiGgGaaGlmaAitaae.egakVlllEkn 30
                v++iGgG++G  aA   a+  + + +l+E++
  MMETSP1137-20121227|7452_1 38 VAVIGGGPSGACAAEIFAKaPNFETTLFERK 68
                79************87777589999999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (456 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       131  (0.0319356); expected 82.0 (0.02)
Passed bias filter:                      122  (0.0297416); expected 82.0 (0.02)
Passed Vit filter:                        36  (0.00877621); expected 4.1 (0.001)
Passed Fwd filter:                        16  (0.00390054); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              16  [number of targets reported over threshold]
# CPU time: 0.46u 0.16s 00:00:00.62 Elapsed: 00:00:00.64
# Mc/sec: 940.42
//
Query:       MMETSP1137-20121227|7453_1  [L=254]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (254 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        92  (0.0224281); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.16s 00:00:00.39 Elapsed: 00:00:00.27
# Mc/sec: 1241.68
//
Query:       MMETSP1137-20121227|7454_1  [L=424]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   6.8e-140  463.9   2.4   7.9e-140  463.7   1.6    1.0  1  TIGR03376 glycerol3P_DH: glycerol-3-phosphate dehydrogenase (NAD(+))


Domain annotation for each model (and alignments):
>> TIGR03376  glycerol3P_DH: glycerol-3-phosphate dehydrogenase (NAD(+))
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  463.7   1.6  1.9e-143  7.9e-140       1     341 [.      83     422 ..      83     423 .. 0.97

  Alignments for each domain:
  == domain 1    score: 463.7 bits;  conditional E-value: 1.9e-143
   TIGR03376   1 kvavvGsGnwGtaiAkivaenakalpelfeekvkmwvfeekiegkkltevineehenvkyLpgiklpenlvavpdleeaakdadilvfviPhqflekilkqlkgkvkkkaraisclkGlevskdgvkllsdiieeel.giacgvlsGanlAnevAkekfsettvaykepkdfdvdaevlkalferpyFrvsvvedvagveiagalknvvAiaaGfveGlelgdnakaAvlrlGllemikfaklffeesevtlveesaGvaDlittClggRnvkvaealak..tgksleelekellngqklqGvatakeveellkk.knleeefPlfeavykilyeelkikkliel 341
                 k+++vGsGnwG+aiA+iv+ na+ + e f+ +v+mwvfee+i+gk+lte+ine+h nvkyLp++klpen+vavpdl+ aakda +l+fv+Phqfl++i+ q+  + +++a+ is++kG+e ++++ kl+s++i++++ g +c+vl+Gan+AnevAk++f+e+tv++ +     + a+ +++ f+rp F+++vv dv gve++galknvvA++aGf++Gl+lg n+kaA++r+Gl+em+kf  l+f++ e+++++es+GvaDlittC+ggRn+k+aea+++  +gks +e+ek llngqklqG +tak+v   lk+ ++++++fPlf+++++i +e++k+++++++
  MMETSP1137-20121227|7454_1  83 KICIVGSGNWGSAIARIVGVNAHFHQE-FNPTVNMWVFEEQIDGKNLTEIINETHVNVKYLPDAKLPENVVAVPDLATAAKDATMLIFVLPHQFLNRICPQIVANCSPNAHIISLIKGIEFENNAPKLISSMISQAMgGKPCSVLMGANVANEVAKDEFCEATVGCLD----VHGANLWHKCFDRPTFKINVVSDVPGVELCGALKNVVALGAGFCDGLKLGGNTKAAIVRIGLMEMKKFCALYFPSVESDTFFESCGVADLITTCYGGRNRKCAEAFVTgeHGKSWDEIEKALLNGQKLQGTITAKDVMICLKAgQDKSDDFPLFTTIHNIAFEGMKVEQIVHC 422
                 69********************77777.*************************************************************************************************************889****************************....788999****************************************************************************************************865599**************************9998648899*********************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (424 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       142  (0.0346173); expected 82.0 (0.02)
Passed bias filter:                      128  (0.0312043); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.18s 00:00:00.51 Elapsed: 00:00:00.85
# Mc/sec: 658.39
//
Query:       MMETSP1137-20121227|7455_1  [L=184]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (184 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        39  (0.00950756); expected 82.0 (0.02)
Passed bias filter:                       37  (0.00901999); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.14s 00:00:00.32 Elapsed: 00:00:00.37
# Mc/sec: 656.38
//
Query:       MMETSP1137-20121227|7456_1  [L=894]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (894 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        73  (0.0177962); expected 82.0 (0.02)
Passed bias filter:                       44  (0.0107265); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.51u 0.14s 00:00:00.65 Elapsed: 00:00:00.78
# Mc/sec: 1512.80
//
Query:       MMETSP1137-20121227|7457_1  [L=807]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.013   12.8   0.5       0.35    8.0   0.0    2.3  2  TIGR03943 TIGR03943: TIGR03943 family protein
        0.1    8.7   1.8       0.14    8.2   1.2    1.1  1  TIGR04154 archaeo_STT3: oligosaccharyl transferase, archaeosortase system-associated


Domain annotation for each model (and alignments):
>> TIGR03943  TIGR03943: TIGR03943 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   0.0   0.00017      0.35      14      89 ..     629     698 ..     625     724 .. 0.81
   2 ?    2.7   0.0    0.0073        15      18      71 ..     730     783 ..     721     792 .. 0.63

  Alignments for each domain:
  == domain 1    score: 8.0 bits;  conditional E-value: 0.00017
   TIGR03943  14 fplllaaavvllllalvqllrdvrekeeeaehhhehktklkrrlvylllllpillgllvppaalgsdtaaqrglaf 89 
                 + +l +  ++l +++++ ++       +++++++++ ++   +++ ++++l +l+gll p+++++   + ++++++
  MMETSP1137-20121227|7457_1 629 HLFLQIGVAALTFVGIAVIVS------QREGSNENSAHSIIGFVITGFVALQALSGLLRPKKPVDPADVPTSATET 698
                 667888889999999999999......33467888899999999**********************9999987777 PP

  == domain 2    score: 2.7 bits;  conditional E-value: 0.0073
   TIGR03943  18 laaavvllllalvqllrdvrekeeeaehhhehktklkrrlvylllllpillgll 71 
                  +++++ll+l++v  +  + + +++ ++++++  k  ++l++++ ++++ +++ 
  MMETSP1137-20121227|7457_1 730 RTTGWFLLVLGIVNCILGSMKLRDQLADRDDSTGKQYASLIAVVSVAAVWIIVY 783
                 567777888888887775544444446666666666666666666666555544 PP

>> TIGR04154  archaeo_STT3: oligosaccharyl transferase, archaeosortase system-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   1.2   7.1e-05      0.14     234     390 ..     589     750 ..     577     789 .. 0.65

  Alignments for each domain:
  == domain 1    score: 8.2 bits;  conditional E-value: 7.1e-05
   TIGR04154 234 kspeylaivgavallvaavlvlpfiekslelsltsysl.lqvlallgvalglvllallarlverkdldrayypaavlglallgllvlalvlpslfsllisnllrfffgatataltiaEaqplllee....gelslaralsefg..lafllalaglllllyrllk 390
                  + + l++v a+ ++ a v ++p++    ++ +++ ++  ++++ +gva  ++ ++++a +v++++ ++     +++g++++g ++l  ++  l  +      ++  +at+t+  ++  q ++ +     +++++  a++ f+  ++ +l ++g++ +++  +k
  MMETSP1137-20121227|7457_1 589 LPIDELIFVHALLMILAWVXLAPLGVAFKRFGASAATFkAHLFLQIGVA--ALTFVGIAVIVSQREGSNENSAHSIIGFVITGFVALQALSGLLRPKKPVDPADVPTSATETKDNVSADQVVVETIpakgQKSTARVAFEIFHrtTGWFLLVLGIVNCILGSMK 750
                 567899*****************99887666655554412444444444..44455666677788888888888888888888888777665555555555555555555555555544442222233437777888888888666678888888777665554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (807 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       121  (0.0294978); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.17s 00:00:00.68 Elapsed: 00:00:00.48
# Mc/sec: 2219.07
//
Query:       MMETSP1137-20121227|7458_1  [L=330]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.16    8.1  14.3       0.24    7.6   9.9    1.4  1  TIGR02442 Cob-chelat-sub: cobaltochelatase subunit
       0.48    6.5  18.5       0.66    6.0  12.8    1.3  1  TIGR00934 2a38euk: potassium uptake protein, Trk family


Domain annotation for each model (and alignments):
>> TIGR02442  Cob-chelat-sub: cobaltochelatase subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   9.9   0.00012      0.24     286     377 ..     150     243 ..     104     294 .. 0.64

  Alignments for each domain:
  == domain 1    score: 7.6 bits;  conditional E-value: 0.00012
   TIGR02442 286 AldgrrevteedvreaaeLvlkhRrrrkpfeeeqek.eekkleekkeeak.pdeekedeseekekeeskkqeeeepgkddekeedekeeaeeea 377
                    ++++v+++ ++  ++  l+  ++ + +++ q k +++ ++++   ++ +++++ +++++++++++++q  +++++++++++++++++++++
  MMETSP1137-20121227|7458_1 150 SHANSQQVNAQQMQMQMRQQLHQQMQMQMQQQLQVKmQQHMQQQRLDMPGvHTPSSMEQGQQQNQQQNQQQILQQNQQQQNQQQNQQQQNQQQQ 243
                 5567788888888888888887777755555543330222233333333344444444443333333333333333333322222222222222 PP

>> TIGR00934  2a38euk: potassium uptake protein, Trk family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0  12.8   0.00032      0.66     173     302 ..     112     243 ..      87     326 .. 0.69

  Alignments for each domain:
  == domain 1    score: 6.0 bits;  conditional E-value: 0.00032
   TIGR00934 173 qvslprksakrddfqeklfsGelvkrdeqdsvhsdqnsedvksdtsadesis..slrfdeskekkkstrvpsekfakrresrdidpedlyrsimmlqekheatakirdkiseanslaaesdeessesrriqe 302
                 q++   +++ + ++q  +++G ++  ++q+   ++ n +  +s+ ++ ++++   ++  +++++ + ++    k++++ +++ +d+  ++ +++m q++++ +++ +++i ++n+ ++++++++ + ++ q+
  MMETSP1137-20121227|7458_1 112 QMQSSMNDSFPANTQMANMQGPMQPINSQQMNTQQMNTSHANSQQVNAQQMQmqMRQQLHQQMQMQMQQQLQVKMQQHMQQQRLDMPGVHTPSSMEQGQQQNQQQNQQQILQQNQQQQNQQQNQQQQNQQQQ 243
                 4445556677789999999****999998887777777777666666666653223333445555666667789999999999****************999999999988888877666666544433222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (330 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                      1110  (0.2706); expected 82.0 (0.02)
Passed bias filter:                      175  (0.0426621); expected 82.0 (0.02)
Passed Vit filter:                        47  (0.0114578); expected 4.1 (0.001)
Passed Fwd filter:                        12  (0.0029254); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.20s 00:00:00.72 Elapsed: 00:00:00.52
# Mc/sec: 837.62
//
Query:       MMETSP1137-20121227|7459_1  [L=558]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (558 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        42  (0.0102389); expected 82.0 (0.02)
Passed bias filter:                       40  (0.00975134); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.16s 00:00:00.51 Elapsed: 00:00:00.39
# Mc/sec: 1888.46
//
Query:       MMETSP1137-20121227|7461_1  [L=1211]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
          0 1100.3   5.9   1.5e-256  851.1   2.0    2.0  2  TIGR01243 CDC48: AAA family ATPase, CDC48 subfamily
   2.5e-217  718.9   5.6    5.2e-84  280.3   1.1    3.1  3  TIGR01242 26Sp45: 26S proteasome subunit P45 family
   8.1e-204  675.8   2.4    3.1e-77  258.3   0.0    3.2  3  TIGR01241 FtsH_fam: ATP-dependent metallopeptidase HflB
   5.7e-159  527.9  12.2    3.5e-61  205.3   0.0    5.3  6  TIGR03689 pup_AAA: proteasome ATPase
    2.1e-26   90.5   0.0    1.8e-09   34.6   0.0    3.3  3  TIGR03922 T7SS_EccA: type VII secretion AAA-ATPase EccA
    5.2e-15   53.1   0.0    5.4e-07   26.8   0.0    2.9  2  TIGR00635 ruvB: Holliday junction DNA helicase RuvB
    7.4e-11   39.5   0.0    3.2e-05   20.9   0.0    3.7  4  TIGR00382 clpX: ATP-dependent Clp protease, ATP-binding subunit ClpX
    1.8e-10   38.2   4.2     0.0033   14.2   0.1    5.6  6  TIGR00390 hslU: ATP-dependent protease HslVU, ATPase subunit
    6.9e-10   36.2   0.0    0.00012   19.1   0.0    3.3  3  TIGR02881 spore_V_K: stage V sporulation protein K
    3.5e-09   33.8   0.1     0.0061   13.3   0.0    3.5  3  TIGR02928 TIGR02928: orc1/cdc6 family replication initiation protein
    3.2e-08   30.1   2.0       0.04    9.9   0.1    4.6  5  TIGR02639 ClpA: ATP-dependent Clp protease ATP-binding subunit ClpA
    2.7e-07   27.3   0.5     0.0031   13.8   0.0    2.6  2  TIGR00763 lon: ATP-dependent protease La
      1e-06   26.3   0.0      0.016   12.6   0.0    2.4  2  TIGR02640 gas_vesic_GvpN: gas vesicle protein GvpN
    2.2e-06   24.8   0.0     0.0044   14.0   0.0    2.5  2  TIGR00362 DnaA: chromosomal replication initiator protein DnaA
    2.2e-05   21.0   0.1      0.029   10.7   0.0    3.1  3  TIGR02903 spore_lon_C: ATP-dependent protease, Lon family
    4.4e-05   21.4   6.1      0.061   11.2   0.0    3.8  4  TIGR02173 cyt_kin_arch: putative cytidylate kinase
    4.5e-05   20.9   0.0      0.068   10.5   0.0    2.5  2  TIGR03420 DnaA_homol_Hda: DnaA regulatory inactivator Hda
    5.1e-05   20.8   0.5      0.049   11.1   0.0    2.3  2  TIGR01351 adk: adenylate kinases
    0.00012   18.7   0.8       0.13    8.6   0.0    2.3  2  TIGR00368 TIGR00368: Mg chelatase-like protein
    0.00016   18.3   0.1       0.12    8.7   0.0    2.8  3  TIGR02902 spore_lonB: ATP-dependent protease LonB
    0.00016   19.1   0.2       0.16    9.4   0.0    3.1  3  TIGR00678 holB: DNA polymerase III, delta' subunit
    0.00038   18.1   0.0        0.4    8.2   0.0    2.6  2  TIGR01313 therm_gnt_kin: carbohydrate kinase, thermoresistant glucokinase family
     0.0052   13.0   1.9          1    5.4   0.0    3.6  4  TIGR03346 chaperone_ClpB: ATP-dependent chaperone protein ClpB
     0.0059   13.7   0.0        0.5    7.4   0.0    2.3  2  TIGR02397 dnaX_nterm: DNA polymerase III, subunit gamma and tau
  ------ inclusion threshold ------
      0.053   11.2   0.6          5    4.8   0.0    3.3  4  TIGR02237 recomb_radB: DNA repair and recombination protein RadB


Domain annotation for each model (and alignments):
>> TIGR01243  CDC48: AAA family ATPase, CDC48 subfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  851.1   2.0  9.3e-259  1.5e-256       6     730 ..      19     756 ..      15     759 .. 0.93
   2 !  250.1   0.0     6e-77   9.8e-75     505     729 ..     920    1151 ..     905    1154 .. 0.93

  Alignments for each domain:
  == domain 1    score: 851.1 bits;  conditional E-value: 9.3e-259
   TIGR01243   6 vaeaykrdvgrgivridrrtaeelgvepgdvveiekgerkavaivyrsflddkgkgiirldgylrknagvaigdrvkvkrae.vkeakkvvlaptqk...irlgrdfedfvkekllg..kvlskgekvvvsvlegelklvvvsttpagivrvteatevelkeeaveeeketkvpevtyedigglkeavkkirelvelplkhpelfeklgieppkgvllygppgtgktllakavaneagayfiaingpeimskyygeseerlreifkeaeenapsiifideidaiapkreevtgevekrvvaqlltlmdglkgrgkvivigatnrpdaldpalrrpgrfdreieigvpdkegrkeilqihtrnmplaedvdldklaevthgfvgadlaalakeaamaalrrllregkidleaeeipkevleelkvtkkdfkealkmvepsalrevlvevpnvkwediggleevkqelreavewplkakevfeklgirppkgvllfgppgtgktllakavatesganfiavrgpeilskwvgesekaireifrkarqaapaiifldeidaiapargadlsea..vtdrivnqllteldgleensdvvviaatnrpdildpallrpgrldrlilvpapdeearleifkihtrslplaedvdleelakktegytgadieavvreaalaalresv.........ksvakekleaeekeilkdl.kvkkkdflealkkvkpsvskedlrvyeklakelk 730
                 v ea + d    +v ++ +t+eel +  gd v ++ g+r+  ++ + +  d    g ir++  +rkn+ v + d + v+++  vk  k+v + p ++   ++ g+ f+ f+k  +l   +++ k +  +v     ++++ vv+t p ++  v+  t +  + e+++ e e ++ +v y+digg++++  +irelvelpl+hp+lf+ +g++pp+g+l+ygppg+gktl+a+avane+ga+f+ ingpeimsk  gese +lr+ f+eae+n+p+iifideidaiapkre++ geve+r+v+qlltlmdglk r +v+vigatnrp+++d alrr grfdre++igvpd +gr e+l+iht+nm l++dvdl++la+ thg+vgad+a l+ eaam+++r  ++   idl+ +ei +e+l+ + v+++ f+ al + +psalre +vevpnv w+diggle vk+el+e v++p+ ++e fek+g+ p kgvl++gppg gktllaka+a+e  anfi+++gpe+l+ w gese ++re+f kar aap+++f+de+d+ia arg++ ++a    dr++nq+lte+dg+  ++ v +i+atnrpdi+dpa+lrpgrld+li++p pde +r++i+k   r+ pla d+dl++lak+t gy+gad+  +++ aa +a+res+         + +a      + +++++ +  ++k +f+ea+k  + sv   d+r+ye +++ l+
  MMETSP1137-20121227|7461_1  19 VDEASNDD--NSVVALNVQTMEELQLFRGDTVLLK-GKRRKDTVCIVLADDTCDLGKIRMNKCVRKNLKVRLADVISVHQCPdVKYGKRVHILPIDDtieGVSGNLFDVFLKPYFLEayRPVRKNDLFLVRGGMRAVEFKVVETDPDEYCIVAPDTVIHCEGEPIKREDEERMDDVGYDDIGGVRKQLGNIRELVELPLRHPQLFKSIGVKPPRGILMYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNSPAIIFIDEIDAIAPKREKTQGEVERRIVSQLLTLMDGLKARAHVVVIGATNRPNSIDGALRRFGRFDREVDIGVPDENGRLEVLRIHTKNMKLSDDVDLEQLAKETHGYVGADIAQLCTEAAMQCIREKMD--VIDLDDDEIDAEILDSMAVSQEHFRTALGTSNPSALRETVVEVPNVTWDDIGGLEGVKRELQEVVQYPVNFPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECSANFISIKGPELLTMWFGESEANVRELFDKARGAAPCVLFFDELDSIARARGSSSGDAggAGDRVINQILTEMDGMGSKKSVFIIGATNRPDIIDPAVLRPGRLDQLIYIPLPDEGSRMNILKSCLRKSPLAPDIDLQHLAKHTPGYSGADLTEICQRAAKMAIRESIereiemekeREAAGADSAMDTEDVVDPVpEITKAHFEEAMKFARRSVNDADIRKYEMFSQTLQ 756
                 66666665..57999*****************999.555555555555555566677**********************9866*******99997652115788999*******9965589*****9988766667************************************************************************************************************************************************************************************************************************************************************************999..9****************************************************************************************************************************************************************99987789*********************************************************************************************************96665544442222222222233445555479***************************99876 PP

  == domain 2    score: 250.1 bits;  conditional E-value: 6e-77
   TIGR01243  505 kavatesganfiavrgpeilskwvgesekaireifrkarqaapaiifldeidaiapargadlsea..vtdrivnqllteldgleensdvvviaatnrpdildpallrpgrldrlilvpapdeearleifkihtrslplaedvdleelakktegytgadieavvreaalaalresv.....ksvakekleaeekeilkdlkvkkkdflealkkvkpsvskedlrvyeklakel 729 
                   ava+e +anfi+v+gpe+l++w gese ++re+f karqa+p++if+de+d+ia arga  + a    dr++nq+lte+dg+   + v vi+atnrpdildpa++rpgrld+li++p+pd e+rl if+   r+ pla+dvdle++a+ te ++gadi  +++ a+ +a+re +       +a ek  +   e   d k+  ++f+ ++k  + svsk +l +y k+ k+l
  MMETSP1137-20121227|7461_1  920 XAVASECKANFISVKGPELLTQWFGESEANVRELFDKARQASPCVIFFDEMDSIAKARGAGGGGAseAGDRVINQILTEIDGVGARKSVFVIGATNRPDILDPAIMRPGRLDQLIYIPVPDYESRLSIFRACLRKSPLADDVDLEHMANITEDFSGADITEICQRACKLAIREEIdeqeaAEAAAEKAGKPLPEPKTDGKLSSRHFEASMKTARRSVSKAELARYLKFRKDL 1151
                  69*********************************************************9876443499********************************************************************************************************9955544455666776667777999*****************************99875 PP

>> TIGR01242  26Sp45: 26S proteasome subunit P45 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  280.3   1.1   3.1e-86   5.2e-84     114     355 ..     185     424 ..     173     431 .. 0.95
   2 !  265.4   0.0   1.1e-81   1.8e-79     110     354 ..     455     700 ..     445     707 .. 0.94
   3 !  173.2   0.1   1.1e-53   1.8e-51     174     350 ..     920    1096 ..     907    1106 .. 0.95

  Alignments for each domain:
  == domain 1    score: 280.3 bits;  conditional E-value: 3.1e-86
   TIGR01242 114 eer.pevsyediGGlekqlreireavelplkkpelfeevGieppkGvllyGppGtGktllakavaeetnatfirvvgselvkkyiGeGarlvrevfklakekapsiifideidaiaakrldsstsGdrevqrtllqllaeldGfdprgnvkviaatnrldildpallrpGrfdrlievplpdleGrleilkihtrkmklaedvdleelaklteGasGadlkaivteaGmfaireerdkvtmed 355
                 eer  +v y+diGG+ kql +ire velpl++p+lf+ +G++pp+G+l+yGppG+Gktl+a+ava+et a f  + g e++ k  Ge  + +r+ f+ a + +p+iifideidaia kr +  t G+ e +r + qll+ +dG+++r +v vi+atnr++ +d al r Grfdr +++ +pd++Grle+l+iht++mkl++dvdle+lak t+G +Gad+  ++tea m  ire+ d++ ++d
  MMETSP1137-20121227|7461_1 185 EERmDDVGYDDIGGVRKQLGNIRELVELPLRHPQLFKSIGVKPPRGILMYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNSPAIIFIDEIDAIAPKREK--TQGEVE-RRIVSQLLTLMDGLKARAHVVVIGATNRPNSIDGALRRFGRFDREVDIGVPDENGRLEVLRIHTKNMKLSDDVDLEQLAKETHGYVGADIAQLCTEAAMQCIREKMDVIDLDD 424
                 555258*****************************************************************************************************************65..667655.47788********************************************************************************************************9987 PP

  == domain 2    score: 265.4 bits;  conditional E-value: 1.1e-81
   TIGR01242 110 aleveerpevsyediGGlekqlreireavelplkkpelfeevGieppkGvllyGppGtGktllakavaeetnatfirvvgselvkkyiGeGarlvrevfklakekapsiifideidaiaakrldsstsGdrevqrtllqllaeldGfdprgnvkviaatnrldildpallrpGrfdrlievplpdleGrleilkihtrkmklaedvdleelaklteGasGadlkaivteaGmfairee.rdkvtme 354
                    v e p+v+++diGGle   re++e+v+ p++ pe fe+ G+ p kGvl+yGppG+Gktllaka+a+e  a fi + g el+  + Ge    vre+f+ a+  ap+++f de+d+ia  r  ss       +r + q+l+e+dG+ ++  v +i+atnr+di+dpa+lrpGr+d+li +plpd+  r++ilk   rk  la+d+dl++lak t G sGadl  i+  a  +aire+  +++ me
  MMETSP1137-20121227|7461_1 455 RETVVEVPNVTWDDIGGLEGVKRELQEVVQYPVNFPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECSANFISIKGPELLTMWFGESEANVRELFDKARGAAPCVLFFDELDSIARARGSSSGDAGGAGDRVINQILTEMDGMGSKKSVFIIGATNRPDIIDPAVLRPGRLDQLIYIPLPDEGSRMNILKSCLRKSPLAPDIDLQHLAKHTPGYSGADLTEICQRAAKMAIRESiEREIEME 700
                 556899*****************************************************************************************************************999888777777889******************************************************************************************************9724566666 PP

  == domain 3    score: 173.2 bits;  conditional E-value: 1.1e-53
   TIGR01242  174 kavaeetnatfirvvgselvkkyiGeGarlvrevfklakekapsiifideidaiaakrldsstsGdrevqrtllqllaeldGfdprgnvkviaatnrldildpallrpGrfdrlievplpdleGrleilkihtrkmklaedvdleelaklteGasGadlkaivteaGmfaireerdk 350 
                   ava+e +a fi v g el+ ++ Ge    vre+f+ a++ +p++if de+d+ia  r     +     +r + q+l+e+dG  +r  v vi+atnr+dildpa++rpGr+d+li +p+pd+e rl i++   rk  la+dvdle++a++te +sGad+  i+  a   airee d+
  MMETSP1137-20121227|7461_1  920 XAVASECKANFISVKGPELLTQWFGESEANVRELFDKARQASPCVIFFDEMDSIAKARGAGGGGASEAGDRVINQILTEIDGVGARKSVFVIGATNRPDILDPAIMRPGRLDQLIYIPVPDYESRLSIFRACLRKSPLADDVDLEHMANITEDFSGADITEICQRACKLAIREEIDE 1096
                  69*****************************************************999887777777789*******************************************************************************************************9765 PP

>> TIGR01241  FtsH_fam: ATP-dependent metallopeptidase HflB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  241.5   0.5   2.2e-74   3.6e-72      46     288 ..     184     424 ..     174     440 .. 0.94
   2 !  258.3   0.0   1.9e-79   3.1e-77      46     292 ..     457     705 ..     430     714 .. 0.93
   3 !  173.5   0.1   9.2e-54   1.5e-51     107     286 ..     920    1099 ..     915    1111 .. 0.95

  Alignments for each domain:
  == domain 1    score: 241.5 bits;  conditional E-value: 2.2e-74
   TIGR01241  46 leeekvkvtfkdvaGideakeelveivdf.LknpkkftklGakiPkGvllvGpPGtGktLlakavaGeagvpffsisGsdfvemfvGvGasrvrDlfeqakknaPciifiDeiDavGrkrgaglgggndereqtLnqlLvemDGfetnegvivlaatnrpdvLDkaLlrPGrfDrqvvvdkPdlkgreeilkvhakkvklaeevdlkkvarrtpGfsGadlanlvneaallaarknkkevtlke 288
                  ee +  v ++d+ G+ ++  ++ e+v+  L++p+ f+++G k P+G+l++GpPG+GktL+a+ava e g  ff i G + +  + G   s +r  fe+a kn+P+iifiDeiDa+  kr+++ g+      + + qlL+ mDG++++ +v+v+ atnrp+ +D aL r GrfDr+v +  Pd +gr e+l++h+k++kl+++vdl+++a++t G+ Gad+a l+ eaa+ + r++ + ++l++
  MMETSP1137-20121227|7461_1 184 DEERMDDVGYDDIGGVRKQLGNIRELVELpLRHPQLFKSIGVKPPRGILMYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNSPAIIFIDEIDAIAPKREKTQGE---VERRIVSQLLTLMDGLKARAHVVVIGATNRPNSIDGALRRFGRFDREVDIGVPDENGRLEVLRIHTKNMKLSDDVDLEQLAKETHGYVGADIAQLCTEAAMQCIREKMDVIDLDD 424
                 45667899********************87*******************************************************************************************95443...334689*****************************************************************************************************99998765 PP

  == domain 2    score: 258.3 bits;  conditional E-value: 1.9e-79
   TIGR01241  46 leeekvkvtfkdvaGideakeelveivdf.LknpkkftklGakiPkGvllvGpPGtGktLlakavaGeagvpffsisGsdfvemfvGvGasrvrDlfeqakknaPciifiDeiDavGrkrgaglgggndereqtLnqlLvemDGfetnegvivlaatnrpdvLDkaLlrPGrfDrqvvvdkPdlkgreeilkvhakkvklaeevdlkkvarrtpGfsGadlanlvneaallaarkn.kkevtlkeleea 292
                 +  e ++vt++d+ G++ +k+el+e+v++ +  p+kf+k+G    kGvl++GpPG GktLlaka+a e +  f+si G +++ m+ G   + vr+lf++a+ +aPc++f De+D++ r+rg + g++    ++ +nq+L+emDG+++++ v ++ atnrpd++D+a+lrPGr+D+ + + +Pd   r +ilk  ++k  la+++dl+++a++tpG+sGadl  ++  aa +a r+  ++e+++++  ea
  MMETSP1137-20121227|7461_1 457 TVVEVPNVTWDDIGGLEGVKRELQEVVQYpVNFPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECSANFISIKGPELLTMWFGESEANVRELFDKARGAAPCVLFFDELDSIARARGSSSGDAGGAGDRVINQILTEMDGMGSKKSVFIIGATNRPDIIDPAVLRPGRLDQLIYIPLPDEGSRMNILKSCLRKSPLAPDIDLQHLAKHTPGYSGADLTEICQRAAKMAIRESiEREIEMEKEREA 705
                 3345789**********************6688*********************************************************************************************************************************************************************************************************974678888776666 PP

  == domain 3    score: 173.5 bits;  conditional E-value: 9.2e-54
   TIGR01241  107 kavaGeagvpffsisGsdfvemfvGvGasrvrDlfeqakknaPciifiDeiDavGrkrgaglgggndereqtLnqlLvemDGfetnegvivlaatnrpdvLDkaLlrPGrfDrqvvvdkPdlkgreeilkvhakkvklaeevdlkkvarrtpGfsGadlanlvneaallaarknkkevtl 286 
                   ava e +  f+s+ G +++  + G   + vr+lf++a++++Pc+if De+D++ ++rgag gg+ +  ++ +nq+L+e+DG ++++ v v+ atnrpd+LD+a++rPGr+D+ + +  Pd++ r +i++  ++k  la++vdl+++a+ t  fsGad+  ++  a+ la r++ +e ++
  MMETSP1137-20121227|7461_1  920 XAVASECKANFISVKGPELLTQWFGESEANVRELFDKARQASPCVIFFDEMDSIAKARGAGGGGASEAGDRVINQILTEIDGVGARKSVFVIGATNRPDILDPAIMRPGRLDQLIYIPVPDYESRLSIFRACLRKSPLADDVDLEHMANITEDFSGADITEICQRACKLAIREEIDEQEA 1099
                  59**************************************************************************************************************************************************************************87554333 PP

>> TIGR03689  pup_AAA: proteasome ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.3   0.0       7.1   1.2e+03     120     153 ..      16      51 ..      12      59 .. 0.63
   2 !  184.4   0.5   4.6e-57   7.6e-55     175     432 ..     187     432 ..     177     439 .. 0.86
   3 !  205.3   0.0   2.1e-63   3.5e-61     173     384 ..     458     656 ..     433     670 .. 0.89
   4 ?    4.0   0.1     0.021       3.5     439     485 ..     673     717 ..     661     723 .. 0.72
   5 !  133.7   0.0   1.1e-41   1.8e-39     248     388 ..     924    1061 ..     915    1073 .. 0.89
   6 ?    4.7   0.0     0.013       2.1     437     465 ..    1072    1100 ..    1060    1108 .. 0.81

  Alignments for each domain:
  == domain 1    score: -4.3 bits;  conditional E-value: 7.1
   TIGR03689 120 ralvvdk.adeervvklagalaee.klraGdsllvd 153
                 r++v ++ +d++ vv l  + +ee +l  Gd++l+ 
  MMETSP1137-20121227|7461_1  16 RLIVDEAsNDDNSVVALNVQTMEElQLFRGDTVLLK 51 
                 555554414566777776555555478888888775 PP

  == domain 2    score: 184.4 bits;  conditional E-value: 4.6e-57
   TIGR03689 175 evPdvtyadiGGldsqieqirdavelPflhkelyreydlkpPkGvllyGPPGcGktliakavanslaekvaedgeaksyflnikGPellnkyvGeterqirliferarekaaegrPvvvffdemdslfrtrGsGvssdvettvvPqllaeldGveslenviviGasnredlidPailrPGrldvkirierPdaeaaadilaky.....ltedlPleedlaeadgdreaavealiekvvdalyareeenelvevteadgstevl 432
                  + dv+y+diGG+ +q+ +ir+ velP+ h++l++  ++kpP+G+l+yGPPG+Gktlia+avan             ++f+ i GPe+++k  Ge+e ++r  fe    +a++++P ++f+de+d++   r      +ve  +v qll+ +dG+++   v+viGa+nr + id a+ r Gr+d  + i+ Pd+++  ++l  +     l++d+ le+   e++g   a++++l +++  a+ + +e+ +++++   + + e+l
  MMETSP1137-20121227|7461_1 187 RMDDVGYDDIGGVRKQLGNIRELVELPLRHPQLFKSIGVKPPRGILMYGPPGSGKTLIARAVANET----------GAFFFLINGPEIMSKLAGESESNLRKAFE----EAEKNSPAIIFIDEIDAIAPKREK-TQGEVERRIVSQLLTLMDGLKARAHVVVIGATNRPNSIDGALRRFGRFDREVDIGVPDENGRLEVLRIHtknmkLSDDVDLEQLAKETHGYVGADIAQLCTEA--AMQCIREKMDVIDLDDDEIDAEIL 432
                 568************************************************************954..........469999*******************8776....567889************999976.5679************************************************************998772222244556664444566777777777777665..455666778888887777777766 PP

  == domain 3    score: 205.3 bits;  conditional E-value: 2.1e-63
   TIGR03689 173 leevPdvtyadiGGldsqieqirdavelPflhkelyreydlkpPkGvllyGPPGcGktliakavanslaekvaedgeaksyflnikGPellnkyvGeterqirliferarekaaegrPvvvffdemdslfrtrGs..GvssdvettvvPqllaeldGveslenviviGasnredlidPailrPGrldvkirierPdaeaaadilakyltedlPl 384
                 + evP+vt++diGGl+    ++++ v+ P  ++e ++++++ p kGvl+yGPPGcGktl+aka+an  +          + f++ikGPell  + Ge+e ++r +f++ar +a    P v+ffde+ds+ r+rGs  G +      v+ q+l+e+dG+ s + v +iGa+nr d+idPa+lrPGrld  i i  Pd+ +  +il+  l ++ Pl
  MMETSP1137-20121227|7461_1 458 VVEVPNVTWDDIGGLEGVKRELQEVVQYPVNFPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECS----------ANFISIKGPELLTMWFGESEANVRELFDKARGAA----PCVLFFDELDSIARARGSssGDAGGAGDRVINQILTEMDGMGSKKSVFIIGATNRPDIIDPAVLRPGRLDQLIYIPLPDEGSRMNILKSCLRKS-PL 656
                 459**************************************************************9654..........57*****************************876....*****************733666778899**********************************************************9988765.55 PP

  == domain 4    score: 4.0 bits;  conditional E-value: 0.021
   TIGR03689 439 sGamlanivdrakkaaikdeleggqkglraehl.laavadevrenedl 485
                 sGa l +i +ra k+ai++++e + +   +e+   aa ad + ++ed+
  MMETSP1137-20121227|7461_1 673 SGADLTEICQRAAKMAIRESIEREIE---MEKErEAAGADSAMDTEDV 717
                 9********************86533...3322033445555566665 PP

  == domain 5    score: 133.7 bits;  conditional E-value: 1.1e-41
   TIGR03689  248 geaksyflnikGPellnkyvGeterqirliferarekaaegrPvvvffdemdslfrtrGsG..vssdvettvvPqllaeldGveslenviviGasnredlidPailrPGrldvkirierPdaeaaadilakyltedlPleedl 388 
                  +e k+ f+++kGPell ++ Ge+e ++r +f++ar++    +P v+ffdemds+ ++rG+G   +s+    v+ q+l+e+dGv + + v viGa+nr d++dPai+rPGrld  i i  Pd e+   i+   l ++ Pl++d+
  MMETSP1137-20121227|7461_1  924 SECKANFISVKGPELLTQWFGESEANVRELFDKARQA----SPCVIFFDEMDSIAKARGAGggGASEAGDRVINQILTEIDGVGARKSVFVIGATNRPDILDPAIMRPGRLDQLIYIPVPDYESRLSIFRACLRKS-PLADDV 1061
                  477999****************************975....7****************9862257888899**********************************************************9998775.776654 PP

  == domain 6    score: 4.7 bits;  conditional E-value: 0.013
   TIGR03689  437 lvsGamlanivdrakkaaikdeleggqkg 465 
                    sGa + +i +ra k ai++e+++++ +
  MMETSP1137-20121227|7461_1 1072 DFSGADITEICQRACKLAIREEIDEQEAA 1100
                  359********************987765 PP

>> TIGR03922  T7SS_EccA: type VII secretion AAA-ATPase EccA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.6   0.0   1.1e-11   1.8e-09     313     429 ..     229     344 ..     195     421 .. 0.77
   2 !   34.4   0.0   1.2e-11   1.9e-09     301     424 ..     493     612 ..     458     620 .. 0.74
   3 !   17.4   0.0   1.7e-06   0.00027     346     426 ..     929    1017 ..     926    1022 .. 0.79

  Alignments for each domain:
  == domain 1    score: 34.6 bits;  conditional E-value: 1.1e-11
   TIGR03922 313 kHlllaGPPGtGkttiArvvakiyaG.lgvlrkpevrEvsRadligeyigeseaktnelidkaLggvlFlDEayaLvekrdgakddfGleaidtLLarlE..ndRdrlvviiAGYe.kdlD 429
                 + +l+ GPPG Gkt iAr+va+     + +++ pe++    ++l ge +++  +  +   +k    ++F+DE+ a+  kr++++ ++   ++ +LL  ++    R ++vvi+A  + + +D
  MMETSP1137-20121227|7461_1 229 RGILMYGPPGSGKTLIARAVANETGAfFFLINGPEIM----SKLAGESESNLRKAFE-EAEKNSPAIIFIDEIDAIAPKREKTQGEVERRIVSQLLTLMDglKARAHVVVIGATNRpNSID 344
                 568999***************9876515678888876....4565555444433333.34556678*********************************9444788899999976524455 PP

  == domain 2    score: 34.4 bits;  conditional E-value: 1.2e-11
   TIGR03922 301 RaerGlavaqrskHlllaGPPGtGkttiArvvakiyaGlgvlrkpevrEvsRadligeyigeseaktnelidkaLgg...vlFlDEayaLvek...rdgakddfGleaidtLLarlEndRdrlvviiAGY 424
                  ++ G++    sk +l+ GPPG Gkt +A+++a+  +        + + ++  +l++ + gesea+  el dka g    vlF+DE+ ++        g     G  +i+++L  ++    +  v+i G 
  MMETSP1137-20121227|7461_1 493 FEKFGMS---PSKGVLFYGPPGCGKTLLAKAIANECS-------ANFISIKGPELLTMWFGESEANVRELFDKARGAapcVLFFDELDSIARArgsSSGDAGGAGDRVINQILTEMDGMGSKKSVFIIGA 612
                 5555553...57899******************9864.......5778899999*******************99854449*********98742223444456789*********98766555555554 PP

  == domain 3    score: 17.4 bits;  conditional E-value: 1.7e-06
   TIGR03922  346 evrEvsRadligeyigeseaktnelidkaLgg...vlFlDEayaLvek...rdgakddfGleaidtLLarlEn..dRdrlvviiAGYek 426 
                  + + v+  +l++++ gesea+  el dka +    v+F+DE+ ++ +    + g   + G  +i+++L  ++    R  + vi+A  + 
  MMETSP1137-20121227|7461_1  929 NFISVKGPELLTQWFGESEANVRELFDKARQAspcVIFFDEMDSIAKArgaGGGGASEAGDRVINQILTEIDGvgARKSVFVIGATNRP 1017
                  566788889******************98764344**********98743334667899***********9963367777777776554 PP

>> TIGR00635  ruvB: Holliday junction DNA helicase RuvB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.8   0.0   3.3e-09   5.4e-07      33     100 ..     231     306 ..     225     396 .. 0.75
   2 !   22.8   0.0   5.2e-08   8.5e-06      32      67 ..     503     538 ..     474     575 .. 0.86

  Alignments for each domain:
  == domain 1    score: 26.8 bits;  conditional E-value: 3.3e-09
   TIGR00635  33 vllyGPPGlGkttlakiiakelgvklkitsgpal......ekpgDlaailtaleegd..vlfiDeihrlskaveel 100
                 +l+yGPPG Gkt +a+ +a+e g+   +++gp++      e +++l  ++ + e+++  ++fiDei +++++ e +
  MMETSP1137-20121227|7461_1 231 ILMYGPPGSGKTLIARAVANETGAFFFLINGPEImsklagESESNLRKAFEEAEKNSpaIIFIDEIDAIAPKREKT 306
                 89******************************984333333467888888887776455***********987765 PP

  == domain 2    score: 22.8 bits;  conditional E-value: 5.2e-08
   TIGR00635  32 hvllyGPPGlGkttlakiiakelgvklkitsgpale 67 
                  vl+yGPPG Gkt lak ia+e  ++   ++gp+l 
  MMETSP1137-20121227|7461_1 503 GVLFYGPPGCGKTLLAKAIANECSANFISIKGPELL 538
                 58*******************************985 PP

>> TIGR00382  clpX: ATP-dependent Clp protease, ATP-binding subunit ClpX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   0.0     2e-07   3.2e-05     120     201 ..     231     306 ..     225     327 .. 0.82
   2 !   12.6   0.0   6.8e-05     0.011     120     213 ..     504     591 ..     490     604 .. 0.77
   3 ?   -1.5   0.0       1.3   2.1e+02     179     199 ..     958     978 ..     947    1006 .. 0.73
   4 ?    0.1   0.0      0.42        69      30      98 ..    1076    1144 ..    1063    1160 .. 0.71

  Alignments for each domain:
  == domain 1    score: 20.9 bits;  conditional E-value: 2e-07
   TIGR00382 120 illiGptGsGktllaqtlakeldvpfaiadattlteaGyvGedvenillkllqaadydvekaekGiiyideidkiarksena 201
                 il+ Gp GsGktl+a+++a+e    f + +   +  +   Ge   n l     +a  + ek    ii+ideid ia k e++
  MMETSP1137-20121227|7461_1 231 ILMYGPPGSGKTLIARAVANETGAFFFLINGPEIM-SKLAGESESN-LR----KAFEEAEKNSPAIIFIDEIDAIAPKREKT 306
                 899*******************9999988887775.4577887666.44....455566788899***********998865 PP

  == domain 2    score: 12.6 bits;  conditional E-value: 6.8e-05
   TIGR00382 120 illiGptGsGktllaqtlakeldvpfaiadattlteaGyvGedvenillkllqaadydvekaekGiiyideidkiarksenasitrdvsGeGvq 213
                 +l+ Gp G Gktlla+++a+e    f       l    + Ge   n+  +l+++a      a   +++ de+d iar   ++s     +G+ v 
  MMETSP1137-20121227|7461_1 504 VLFYGPPGCGKTLLAKAIANECSANFISIKGPELLT-MWFGESEANV-RELFDKAR----GAAPCVLFFDELDSIARARGSSSGDAGGAGDRVI 591
                 7889******************99986555555543.5889987775.78998876....578899***********98877766555555554 PP

  == domain 3    score: -1.5 bits;  conditional E-value: 1.3
   TIGR00382 179 ekaekGiiyideidkiarkse 199
                 ++a   +i+ de+d ia+   
  MMETSP1137-20121227|7461_1 958 RQASPCVIFFDEMDSIAKARG 978
                 5677889*********99754 PP

  == domain 4    score: 0.1 bits;  conditional E-value: 0.42
   TIGR00382   30 vyicdecielchdileeelgdkkeskeveeeleleelpkpkel.kevldeyviGqeqakkvlsvavynhy 98  
                  + i + c   c+  ++ee  d++e+ e++ e+  + lp+pk   k    ++    ++a++++s a    y
  MMETSP1137-20121227|7461_1 1076 ADITEICQRACKLAIREEI-DEQEAAEAAAEKAGKPLPEPKTDgKLSSRHFEASMKTARRSVSKAELARY 1144
                  5688899999999999988.667888889999999*****864133334455555666666666655555 PP

>> TIGR00390  hslU: ATP-dependent protease HslVU, ATPase subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.5   0.0   0.00056     0.092      47      76 ..     228     257 ..     218     263 .. 0.88
   2 !   14.2   0.1     2e-05    0.0033     235     287 ..     273     326 ..     259     338 .. 0.77
   3 ?   -1.3   0.0         1   1.7e+02     140     182 ..     396     439 ..     365     447 .. 0.74
   4 !    5.9   0.0    0.0067       1.1      48      83 ..     502     537 ..     494     558 .. 0.80
   5 ?    0.5   0.0       0.3        50     249     272 ..     562     585 ..     544     603 .. 0.78
   6 ?    3.2   0.0     0.045       7.4     221     274 ..     937     988 ..     876    1007 .. 0.64

  Alignments for each domain:
  == domain 1    score: 9.5 bits;  conditional E-value: 0.00056
   TIGR00390  47 PknilmiGstGvGkteiarrlaklaeaPfi 76 
                 P+ ilm G+ G Gkt iar +a  ++a f 
  MMETSP1137-20121227|7461_1 228 PRGILMYGPPGSGKTLIARAVANETGAFFF 257
                 899*******************98888776 PP

  == domain 2    score: 14.2 bits;  conditional E-value: 2e-05
   TIGR00390 235 eeikqeavdrvees..GiifideidkiakkgessgadvsreGvqrdllPiveGst 287
                 e   ++a +++e++   iifideid ia k e+++ +v r  v   ll +++G +
  MMETSP1137-20121227|7461_1 273 ESNLRKAFEEAEKNspAIIFIDEIDAIAPKREKTQGEVERRIVS-QLLTLMDGLK 326
                 44456788888876336*********************999775.6888888866 PP

  == domain 3    score: -1.3 bits;  conditional E-value: 1
   TIGR00390 140 fgeee.ekdeeesakealrkklreGelddkeieievsekspsei 182
                 ++  +  +  +e+a + +r+k+   +ldd ei+ e+ + ++++ 
  MMETSP1137-20121227|7461_1 396 YVGADiAQLCTEAAMQCIREKMDVIDLDDDEIDAEILDSMAVSQ 439
                 44455344556778888899999999999999999988876655 PP

  == domain 4    score: 5.9 bits;  conditional E-value: 0.0067
   TIGR00390  48 knilmiGstGvGkteiarrlaklaeaPfikveatkf 83 
                 k +l  G+ G Gkt +a+ +a    a fi +     
  MMETSP1137-20121227|7461_1 502 KGVLFYGPPGCGKTLLAKAIANECSANFISIKGPEL 537
                 7899*************************9987655 PP

  == domain 5    score: 0.5 bits;  conditional E-value: 0.3
   TIGR00390 249 Giifideidkiakkgessgadvsr 272
                  ++f de+d ia+   ss+ d   
  MMETSP1137-20121227|7461_1 562 CVLFFDELDSIARARGSSSGDAGG 585
                 699*********999888888654 PP

  == domain 6    score: 3.2 bits;  conditional E-value: 0.045
   TIGR00390 221 kvlieeeaeklvdseeikqeavdrveesGiifideidkiakkgessgadvsreG 274
                 ++l++   e   +  e+ ++a ++  +  +if de+d iak     g   s  G
  MMETSP1137-20121227|7461_1 937 ELLTQWFGESEANVRELFDKARQA--SPCVIFFDEMDSIAKARGAGGGGASEAG 988
                 555555555555666666666554..568***********98755555555544 PP

>> TIGR02881  spore_V_K: stage V sporulation protein K
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.9   0.0    0.0019      0.31      46     127 ..     232     309 ..     225     342 .. 0.78
   2 !   19.1   0.0   7.1e-07   0.00012       8     122 ..     469     577 ..     464     618 .. 0.75
   3 ?    5.0   0.0     0.014       2.3      74     136 ..     927     994 ..     913    1042 .. 0.77

  Alignments for each domain:
  == domain 1    score: 7.9 bits;  conditional E-value: 0.0019
   TIGR02881  46 ifkGnPGtGkttvarllaklfkelnvlskGhlieveradlvGeyiGhtaqktrevikkalGGvlfideayslarGGekdfGk 127
                 ++ G PG+Gkt +ar +a+    +  l  G  i    + l Ge      +k+ e  +k +  ++fide  ++a   ek  G 
  MMETSP1137-20121227|7461_1 232 LMYGPPGSGKTLIARAVANETGAFFFLINGPEIM---SKLAGESES-NLRKAFEEAEKNSPAIIFIDEIDAIAPKREKTQGE 309
                 67799**************999999999999885...568899755.567888899999999******99999999987773 PP

  == domain 2    score: 19.1 bits;  conditional E-value: 7.1e-07
   TIGR02881   8 lvGleevkelikeiyal.ilinekrkeeglkaekqvlhmifkGnPGtGkttvarllaklfkelnvlskGhlieveradlvGeyiGhtaqktrevikkalGG...vlfideayslarGGe 122
                 + Gle vk+ ++e+  + +   ek ++ g+  +k v   +f G PG Gkt +a+ +a+           ++i ++  +l+  + G++  ++re+  ka G    vlf de  s+ar   
  MMETSP1137-20121227|7461_1 469 IGGLEGVKRELQEVVQYpVNFPEKFEKFGMSPSKGV---LFYGPPGCGKTLLAKAIANECS-------ANFISIKGPELLTMWFGESEANVRELFDKARGAapcVLFFDELDSIARARG 577
                 5599*********98883567788888888888876...699************9997554.......5678888899*******************99954449******99987422 PP

  == domain 3    score: 5.0 bits;  conditional E-value: 0.014
   TIGR02881  74 kGhlieveradlvGeyiGhtaqktrevi...kkalGGvlfideaysla..rGGekdfGkeaidtlvke 136
                 k ++i v+  +l+ ++ G++  ++re+    ++a+  v+f de  s+a  rG       ea d ++++
  MMETSP1137-20121227|7461_1 927 KANFISVKGPELLTQWFGESEANVRELFdkaRQASPCVIFFDEMDSIAkaRGAGGGGASEAGDRVINQ 994
                 7789999999***************987222566789******9998622554444445555555543 PP

>> TIGR02928  TIGR02928: orc1/cdc6 family replication initiation protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   0.0   3.7e-05    0.0061      38      63 ..     226     251 ..     217     254 .. 0.88
   2 ?    4.6   0.0     0.016       2.6     121     179 ..     280     343 ..     269     349 .. 0.76
   3 !   11.4   0.0   0.00014     0.023      39      66 ..     500     527 ..     481     535 .. 0.86

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 3.7e-05
   TIGR02928  38 srpsnvliyGktGtGKtavtkkvlke 63 
                 + p+ +l+yG++G+GKt+++++v +e
  MMETSP1137-20121227|7461_1 226 KPPRGILMYGPPGSGKTLIARAVANE 251
                 57899*****************9987 PP

  == domain 2    score: 4.6 bits;  conditional E-value: 0.016
   TIGR02928 121 vkeleeredsliivLDEiDklv.kkeade......lLyeLsraeengdlekakvsvigisndlkfl 179
                 ++e e ++  +ii +DEiD +  k+e+ +      ++ +L+ + +  +++ a+v vig +n  +++
  MMETSP1137-20121227|7461_1 280 FEEAE-KNSPAIIFIDEIDAIApKREKTQgeverrIVSQLLTLMDGLKAR-AHVVVIGATNRPNSI 343
                 44444.455567889******97666555789999999999998888888.999999999987765 PP

  == domain 3    score: 11.4 bits;  conditional E-value: 0.00014
   TIGR02928  39 rpsnvliyGktGtGKtavtkkvlkelee 66 
                  ++ vl yG++G+GKt+ +k++ +e ++
  MMETSP1137-20121227|7461_1 500 PSKGVLFYGPPGCGKTLLAKAIANECSA 527
                 34569*****************998765 PP

>> TIGR02639  ClpA: ATP-dependent Clp protease ATP-binding subunit ClpA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.0     0.022       3.6     485     515 ..     226     256 ..     218     267 .. 0.83
   2 !    9.9   0.1   0.00025      0.04     257     321 ..     267     337 ..     258     394 .. 0.71
   3 !    7.9   0.0   0.00098      0.16     485     516 ..     499     530 ..     493     539 .. 0.88
   4 ?   -1.7   0.0      0.78   1.3e+02     257     298 ..     540     581 ..     536     588 .. 0.85
   5 ?    4.2   0.0     0.013       2.2     256     304 ..     940     989 ..     935    1005 .. 0.88

  Alignments for each domain:
  == domain 1    score: 3.5 bits;  conditional E-value: 0.022
   TIGR02639 485 kPvgsflfvGptGvGktelakqLaeelgvel 515
                 kP    l++Gp G Gkt +a+++a+e g  +
  MMETSP1137-20121227|7461_1 226 KPPRGILMYGPPGSGKTLIARAVANETGAFF 256
                 566678999***************9988655 PP

  == domain 2    score: 9.9 bits;  conditional E-value: 0.00025
   TIGR02639 257 kyrGdfeerlkevveeiekeedailfiDeihtivgagatsggsld...asnlLk...PalasGkirciGst 321
                 k  G+ e  l++  ee ek++ ai+fiDei +i      ++g+++   +s+lL       a  ++ +iG+t
  MMETSP1137-20121227|7461_1 267 KLAGESESNLRKAFEEAEKNSPAIIFIDEIDAIAPKREKTQGEVErriVSQLLTlmdGLKARAHVVVIGAT 337
                 77899****************************99888888888733345555311123344566667766 PP

  == domain 3    score: 7.9 bits;  conditional E-value: 0.00098
   TIGR02639 485 kPvgsflfvGptGvGktelakqLaeelgvell 516
                 +P    lf+Gp G Gkt lak++a+e + +++
  MMETSP1137-20121227|7461_1 499 SPSKGVLFYGPPGCGKTLLAKAIANECSANFI 530
                 577889******************99888776 PP

  == domain 4    score: -1.7 bits;  conditional E-value: 0.78
   TIGR02639 257 kyrGdfeerlkevveeiekeedailfiDeihtivgagatsgg 298
                  + G+ e+ ++e+ ++ +     +lf De+  i  a  +s g
  MMETSP1137-20121227|7461_1 540 MWFGESEANVRELFDKARGAAPCVLFFDELDSIARARGSSSG 581
                 56789999999999999999999**********999776666 PP

  == domain 5    score: 4.2 bits;  conditional E-value: 0.013
   TIGR02639 256 tkyrGdfeerlkevveeiekeedailfiDeihtivga.gatsggsldasn 304
                 t++ G+ e+ ++e+ ++ ++ +  ++f De+  i  a ga++gg+ +a +
  MMETSP1137-20121227|7461_1 940 TQWFGESEANVRELFDKARQASPCVIFFDEMDSIAKArGAGGGGASEAGD 989
                 7899*******************************996778888887765 PP

>> TIGR00763  lon: ATP-dependent protease La
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.8   0.1   0.00015     0.025     356     384 ..     231     259 ..     227     324 .. 0.76
   2 !   13.8   0.0   1.9e-05    0.0031     355     384 ..     503     532 ..     472     534 .. 0.88

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 0.00015
   TIGR00763 356 lclvGPPGVGKtSlaksiAkalnrkfvrl 384
                 + ++GPPG GKt +a+++A+ ++  f+ +
  MMETSP1137-20121227|7461_1 231 ILMYGPPGSGKTLIARAVANETGAFFFLI 259
                 6799****************999888754 PP

  == domain 2    score: 13.8 bits;  conditional E-value: 1.9e-05
   TIGR00763 355 ilclvGPPGVGKtSlaksiAkalnrkfvrl 384
                  + ++GPPG GKt lak+iA+    +f+ +
  MMETSP1137-20121227|7461_1 503 GVLFYGPPGCGKTLLAKAIANECSANFISI 532
                 578******************999999865 PP

>> TIGR02640  gas_vesic_GvpN: gas vesicle protein GvpN
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.0   0.0    0.0003     0.049      23      58 ..     230     265 ..     224     283 .. 0.81
   2 !   12.6   0.0   9.5e-05     0.016      23      58 ..     503     538 ..     491     546 .. 0.87

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 0.0003
   TIGR02640  23 pvhlrGPaGtGktslalhvakkrdrPvvllnGdael 58 
                  + + GP G+Gkt +a++va++ +    l+nG + +
  MMETSP1137-20121227|7461_1 230 GILMYGPPGSGKTLIARAVANETGAFFFLINGPEIM 265
                 57789************************9997654 PP

  == domain 2    score: 12.6 bits;  conditional E-value: 9.5e-05
   TIGR02640  23 pvhlrGPaGtGktslalhvakkrdrPvvllnGdael 58 
                  v + GP G+Gkt la ++a++     + ++G + l
  MMETSP1137-20121227|7461_1 503 GVLFYGPPGCGKTLLAKAIANECSANFISIKGPELL 538
                 6889******************99999999997655 PP

>> TIGR00362  DnaA: chromosomal replication initiator protein DnaA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.0   2.7e-05    0.0044     140     299 ..     231     391 ..     223     471 .. 0.82
   2 !    8.1   0.0    0.0016      0.26     139     164 ..     503     528 ..     493     533 .. 0.86

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 2.7e-05
   TIGR00362 140 lfiyGgvGlGKTHLlqAigneilkknpnakvvYvsaekFvndfvkalrekkieefkekyr.svDlLLiDDiqflagk.ektqee........ffhtfnalleknkqivltsDrapkelegleeRLkSRfewGLvvdieppdletrlaILkkkaeeeklelpeev.lefiak 299
                 +++yG  G GKT + +A++ne+ +       + ++  + ++++    +++  ++f+e  + s  ++ iD i  +a k ektq e        ++ +++ l  + + +v+ + + p++++g   R+  Rf+    vdi  pd + rl++L+  ++++kl+ +  v le +ak
  MMETSP1137-20121227|7461_1 231 ILMYGPPGSGKTLIARAVANETGAF-----FFLINGPEIMSKLAGESESNLRKAFEEAEKnSPAIIFIDEIDAIAPKrEKTQGEverrivsqLLTLMDGLKARAHVVVIGATNRPNSIDGALRRF-GRFDR--EVDIGVPDENGRLEVLRIHTKNMKLSDD--VdLEQLAK 391
                 789****************977655.....799***********************98883556788*******976257775522332222788899999999****************98886.7**98..69**************977776665544..32344444 PP

  == domain 2    score: 8.1 bits;  conditional E-value: 0.0016
   TIGR00362 139 PlfiyGgvGlGKTHLlqAigneilkk 164
                  +++yG  G GKT L +Ai+ne+ ++
  MMETSP1137-20121227|7461_1 503 GVLFYGPPGCGKTLLAKAIANECSAN 528
                 5789*****************98776 PP

>> TIGR02903  spore_lon_C: ATP-dependent protease, Lon family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.7   0.0   0.00018     0.029     174     198 ..     227     251 ..     207     255 .. 0.85
   2 ?   -1.6   0.0      0.91   1.5e+02     320     342 ..     327     348 ..     315     351 .. 0.85
   3 !    6.3   0.0    0.0038      0.63     167     198 ..     493     524 ..     475     530 .. 0.71

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 0.00018
   TIGR02903 174 fpqhiilyGppGvGkttaarlalee 198
                  p+ i++yGppG Gkt +ar + +e
  MMETSP1137-20121227|7461_1 227 PPRGILMYGPPGSGKTLIARAVANE 251
                 5899****************98776 PP

  == domain 2    score: -1.6 bits;  conditional E-value: 0.91
   TIGR02903 320 apadfvliGattrdpeeinpalr 342
                 a a  v+iGat r p+ i+ alr
  MMETSP1137-20121227|7461_1 327 ARAHVVVIGATNR-PNSIDGALR 348
                 77999*****876.999****99 PP

  == domain 3    score: 6.3 bits;  conditional E-value: 0.0038
   TIGR02903 167 laklaspfpqhiilyGppGvGkttaarlalee 198
                 + k      + +++yGppG Gkt  a+ + +e
  MMETSP1137-20121227|7461_1 493 FEKFGMSPSKGVLFYGPPGCGKTLLAKAIANE 524
                 555555556789***********999876655 PP

>> TIGR02173  cyt_kin_arch: putative cytidylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.2   0.0   0.00037     0.061       3      25 ..     231     253 ..     230     311 .. 0.79
   2 !   10.5   0.0   0.00059     0.097       6      30 ..     507     531 ..     503     535 .. 0.91
   3 ?   -2.8   0.2       7.2   1.2e+03     103     132 ..     683     703 ..     677     716 .. 0.57
   4 ?    0.0   0.1      0.98   1.6e+02     100     124 ..    1081    1105 ..    1066    1109 .. 0.82

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 0.00037
   TIGR02173   3 ivisGpPGsGkttvakilaekls 25 
                 i + GpPGsGkt +a+ +a++ +
  MMETSP1137-20121227|7461_1 231 ILMYGPPGSGKTLIARAVANETG 253
                 6678***************9976 PP

  == domain 2    score: 10.5 bits;  conditional E-value: 0.00059
   TIGR02173   6 sGpPGsGkttvakilaeklslklis 30 
                  GpPG Gkt +ak +a++ s ++is
  MMETSP1137-20121227|7461_1 507 YGPPGCGKTLLAKAIANECSANFIS 531
                 69*******************9998 PP

  == domain 3    score: -2.8 bits;  conditional E-value: 7.2
   TIGR02173 103 raeriakrenksltealkeiiere.esekrr 132
                 ra ++a+re ++          re e+ek r
  MMETSP1137-20121227|7461_1 683 RAAKMAIRESIE----------REiEMEKER 703
                 555555555555..........432233333 PP

  == domain 4    score: 0.0 bits;  conditional E-value: 0.98
   TIGR02173  100 levraeriakrenksltealkeiie 124 
                  +  ra ++a+re+++ +ea +  +e
  MMETSP1137-20121227|7461_1 1081 ICQRACKLAIREEIDEQEAAEAAAE 1105
                  4569999********9999887665 PP

>> TIGR03420  DnaA_homol_Hda: DnaA regulatory inactivator Hda
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.5   0.0   0.00042     0.068      38     141 ..     228     347 ..     217     385 .. 0.62
   2 !    7.5   0.0    0.0034      0.56      40      65 ..     503     528 ..     491     576 .. 0.82

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 0.00042
   TIGR03420  38 erllylwGesgsGksHLLqAacaaaee.....agksaiylplkelaqllv.evlegleq..aelvalDdvealagerewee.........alfdlynrlresgrkllvageaaPaelklrl 141
                  r + ++G++gsGk+ + +A+++++ +     +g + i+ +l+  ++ ++ +++e++e+   +++ +D+++a+a +re+ +         +l+ l+  l+++ + +++ +++ P++++ +l
  MMETSP1137-20121227|7461_1 228 PRGILMYGPPGSGKTLIARAVANETGAfffliNGPE-IMSKLAGESESNLrKAFEEAEKnsPAIIFIDEIDAIAPKREKTQgeverrivsQLLTLMDGLKARAHVVVIGATNRPNSIDGAL 347
                 677899****************98765222213333.34445544444444777777651257999*******998876442222222225677777777778888888888888887773 PP

  == domain 2    score: 7.5 bits;  conditional E-value: 0.0034
   TIGR03420  40 llylwGesgsGksHLLqAacaaaeea 65 
                  + ++G++g+Gk+ L +A++++++++
  MMETSP1137-20121227|7461_1 503 GVLFYGPPGCGKTLLAKAIANECSAN 528
                 57899***************999765 PP

>> TIGR01351  adk: adenylate kinases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.7   0.0    0.0031      0.51       2      24 ..     231     253 ..     230     265 .. 0.90
   2 !   11.1   0.0    0.0003     0.049       2      29 ..     504     531 ..     503     535 .. 0.93

  Alignments for each domain:
  == domain 1    score: 7.7 bits;  conditional E-value: 0.0031
   TIGR01351   2 lvllGpPGsGKGTqakrlaeklg 24 
                 +++ GpPGsGK  +a+ +a+++g
  MMETSP1137-20121227|7461_1 231 ILMYGPPGSGKTLIARAVANETG 253
                 6789***************9987 PP

  == domain 2    score: 11.1 bits;  conditional E-value: 0.0003
   TIGR01351   2 lvllGpPGsGKGTqakrlaeklglvhis 29 
                 +++ GpPG+GK   ak +a++++   is
  MMETSP1137-20121227|7461_1 504 VLFYGPPGCGKTLLAKAIANECSANFIS 531
                 789*******************999887 PP

>> TIGR00368  TIGR00368: Mg chelatase-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.1   0.1    0.0011      0.18     213     231 ..     230     248 ..     222     252 .. 0.87
   2 !    8.6   0.0   0.00081      0.13     213     231 ..     503     521 ..     497     525 .. 0.88

  Alignments for each domain:
  == domain 1    score: 8.1 bits;  conditional E-value: 0.0011
   TIGR00368 213 nllllGPPGsGktllakrl 231
                  +l+ GPPGsGktl+a+ +
  MMETSP1137-20121227|7461_1 230 GILMYGPPGSGKTLIARAV 248
                 5899***********9976 PP

  == domain 2    score: 8.6 bits;  conditional E-value: 0.00081
   TIGR00368 213 nllllGPPGsGktllakrl 231
                  +l+ GPPG Gktllak +
  MMETSP1137-20121227|7461_1 503 GVLFYGPPGCGKTLLAKAI 521
                 589*************987 PP

>> TIGR02902  spore_lonB: ATP-dependent protease LonB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.7   0.0   0.00075      0.12      85     109 ..     227     251 ..     218     255 .. 0.85
   2 !    6.2   0.0    0.0043      0.71      87     113 ..     502     528 ..     496     559 .. 0.85
   3 ?   -3.6   0.0         4   6.5e+02     236     317 ..     609     693 ..     597     702 .. 0.65

  Alignments for each domain:
  == domain 1    score: 8.7 bits;  conditional E-value: 0.00075
   TIGR02902  85 npqhviiyGppGvGktaaarlvlee 109
                  p+ +++yGppG Gkt  ar v +e
  MMETSP1137-20121227|7461_1 227 PPRGILMYGPPGSGKTLIARAVANE 251
                 588899**************99876 PP

  == domain 2    score: 6.2 bits;  conditional E-value: 0.0043
   TIGR02902  87 qhviiyGppGvGktaaarlvleeakks 113
                 + v+ yGppG Gkt  a+ + +e   +
  MMETSP1137-20121227|7461_1 502 KGVLFYGPPGCGKTLLAKAIANECSAN 528
                 45999**********999988877655 PP

  == domain 3    score: -3.6 bits;  conditional E-value: 4
   TIGR02902 236 liGattrkpeeippal.r.srcveiffrelekeeik.eiakkaaekiglslekealeliaky.asnGreavnlvqlaaGlalnenr 317
                 +iGat r p+ i+pa+ r  r  ++ + +l +e  + +i k +  k  l+ + +  +l ++    +G +  ++ q aa +a+ e  
  MMETSP1137-20121227|7461_1 609 IIGATNR-PDIIDPAVlRpGRLDQLIYIPLPDEGSRmNILKSCLRKSPLAPDIDLQHLAKHTpGYSGADLTEICQRAAKMAIRESI 693
                 6777654.888887752534666677788877765525777777777766665544444332146888999999999999888764 PP

>> TIGR00678  holB: DNA polymerase III, delta' subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   0.0     0.014       2.2      14      37 ..     228     251 ..     220     255 .. 0.88
   2 ?   -1.1   0.0       1.6   2.7e+02     106     140 ..     266     300 ..     256     301 .. 0.80
   3 !    9.4   0.0   0.00098      0.16      15      38 ..     502     525 ..     496     533 .. 0.88

  Alignments for each domain:
  == domain 1    score: 5.6 bits;  conditional E-value: 0.014
   TIGR00678  14 ahAlLfaGpeGvGkealaealaka 37 
                 +  +L++Gp+G+Gk+ +a+a+a++
  MMETSP1137-20121227|7461_1 228 PRGILMYGPPGSGKTLIARAVANE 251
                 6789*****************976 PP

  == domain 2    score: -1.1 bits;  conditional E-value: 1.6
   TIGR00678 106 ealneaaaNaLLKtLEEPpektlflLisespekll 140
                 ++l  +++  L K +EE+++++ +++  ++ +++ 
  MMETSP1137-20121227|7461_1 266 SKLAGESESNLRKAFEEAEKNSPAIIFIDEIDAIA 300
                 456678889999*********99999888888776 PP

  == domain 3    score: 9.4 bits;  conditional E-value: 0.00098
   TIGR00678  15 hAlLfaGpeGvGkealaealakal 38 
                 + +Lf+Gp+G+Gk+ la+a+a++ 
  MMETSP1137-20121227|7461_1 502 KGVLFYGPPGCGKTLLAKAIANEC 525
                 679*****************9865 PP

>> TIGR01313  therm_gnt_kin: carbohydrate kinase, thermoresistant glucokinase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.0   0.0     0.006      0.99       2      26 ..     232     256 ..     231     269 .. 0.79
   2 !    8.2   0.0    0.0024       0.4       4      27 ..     507     530 ..     504     540 .. 0.87

  Alignments for each domain:
  == domain 1    score: 7.0 bits;  conditional E-value: 0.006
   TIGR01313   2 vlmGvaGsGkstiakelakklgakf 26 
                 ++ G+ GsGk+ ia+++a++ ga f
  MMETSP1137-20121227|7461_1 232 LMYGPPGSGKTLIARAVANETGAFF 256
                 5679****************99654 PP

  == domain 2    score: 8.2 bits;  conditional E-value: 0.0024
   TIGR01313   4 mGvaGsGkstiakelakklgakfi 27 
                  G+ G+Gk+ +ak++a++ +a+fi
  MMETSP1137-20121227|7461_1 507 YGPPGCGKTLLAKAIANECSANFI 530
                 6999****************9998 PP

>> TIGR03346  chaperone_ClpB: ATP-dependent chaperone protein ClpB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.0      0.36        59     594     617 ..     227     250 ..     224     257 .. 0.84
   2 ?    3.7   0.1     0.021       3.4     244     310 ..     266     338 ..     257     387 .. 0.77
   3 !    5.4   0.0    0.0063         1     594     617 ..     500     523 ..     497     529 .. 0.89
   4 ?   -1.1   0.0      0.56        92     247     310 ..     943    1015 ..     940    1074 .. 0.57

  Alignments for each domain:
  == domain 1    score: -0.5 bits;  conditional E-value: 0.36
   TIGR03346 594 PigsflflGptGvGktelakalae 617
                 P    l+ Gp G Gkt +a+a+a+
  MMETSP1137-20121227|7461_1 227 PPRGILMYGPPGSGKTLIARAVAN 250
                 55567889*************997 PP

  == domain 2    score: 3.7 bits;  conditional E-value: 0.021
   TIGR03346 244 akyrGefeerlkavlkevekseGeiilfidelhtlvGa.GkaeGald...agnllkPa...larGelhciGatt 310
                 +k  Ge e  l+  ++e ek+    i+fide+ ++     k++G ++    ++ll  +    ar  + +iGat 
  MMETSP1137-20121227|7461_1 266 SKLAGESESNLRKAFEEAEKNS-PAIIFIDEIDAIAPKrEKTQGEVErriVSQLLTLMdglKARAHVVVIGATN 338
                 6889*************98876.6678******99864268888887333456554332216888888888885 PP

  == domain 3    score: 5.4 bits;  conditional E-value: 0.0063
   TIGR03346 594 PigsflflGptGvGktelakalae 617
                 P    lf Gp G Gkt laka+a+
  MMETSP1137-20121227|7461_1 500 PSKGVLFYGPPGCGKTLLAKAIAN 523
                 77789*****************97 PP

  == domain 4    score: -1.1 bits;  conditional E-value: 0.56
   TIGR03346  247 rGefeerlkavlkevekseGeiilfidelhtlvGa.Gk.aeGaldagn.llkPal.......arGelhciGatt 310 
                   Ge e  ++ ++++ +++    ++f de+  +  a G+ + Ga +ag+ ++  +l       ar  + +iGat 
  MMETSP1137-20121227|7461_1  943 FGESEANVRELFDKARQAS-PCVIFFDEMDSIAKArGAgGGGASEAGDrVINQILteidgvgARKSVFVIGATN 1015
                  5777888888777766655.677888999999855333134677887523333332222223666666666664 PP

>> TIGR02397  dnaX_nterm: DNA polymerase III, subunit gamma and tau
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.0     0.042       6.9      38      58 ..     230     250 ..     225     252 .. 0.88
   2 !    7.4   0.0     0.003       0.5      38      58 ..     503     523 ..     499     530 .. 0.88

  Alignments for each domain:
  == domain 1    score: 3.6 bits;  conditional E-value: 0.042
   TIGR02397  38 ayLfsGprGvGKTsiArilAk 58 
                   L++Gp G GKT iAr +A+
  MMETSP1137-20121227|7461_1 230 GILMYGPPGSGKTLIARAVAN 250
                 5799*************9985 PP

  == domain 2    score: 7.4 bits;  conditional E-value: 0.003
   TIGR02397  38 ayLfsGprGvGKTsiArilAk 58 
                   Lf+Gp G+GKT +A+ +A+
  MMETSP1137-20121227|7461_1 503 GVLFYGPPGCGKTLLAKAIAN 523
                 579**************9997 PP

>> TIGR02237  recomb_radB: DNA repair and recombination protein RadB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   0.0      0.03         5      17      36 ..     233     252 ..     228     258 .. 0.84
   2 ?   -1.4   0.0       2.4   3.9e+02      86     144 ..     276     334 ..     269     348 .. 0.63
   3 ?   -2.7   0.0       5.9   9.7e+02      27     112 ..     403     444 ..     391     459 .. 0.51
   4 ?    2.1   0.0      0.19        32      17      35 ..     506     524 ..     501     532 .. 0.78

  Alignments for each domain:
  == domain 1    score: 4.8 bits;  conditional E-value: 0.03
   TIGR02237  17 iyGpggsGKtnialilavea 36 
                 +yGp+gsGKt ia  +a e+
  MMETSP1137-20121227|7461_1 233 MYGPPGSGKTLIARAVANET 252
                 7**********998887665 PP

  == domain 2    score: -1.4 bits;  conditional E-value: 2.4
   TIGR02237  86 iqkaskliekekadlvvvDsltalyRleksddrislklelarqlslLl.slArkkdlavv 144
                 ++ka++ +ek++  ++ +D + a+   ++++ + ++++ + +ql +L+  l ++ ++ v+
  MMETSP1137-20121227|7461_1 276 LRKAFEEAEKNSPAIIFIDEIDAIAP-KREKTQGEVERRIVSQLLTLMdGLKARAHVVVI 334
                 66666777777777777887777643.333444567777777766554145555555444 PP

  == domain 3    score: -2.7 bits;  conditional E-value: 5.9
   TIGR02237  27 nialilaveaaekgkkvvyiDtEGlsleRlkqiaedrfekvlsklivfevfdldeqekaiqkaskliekekadlvvvDsltalyRl 112
                 +++  +a++ +++   v+ +D + +  e l ++a ++                                            +++R 
  MMETSP1137-20121227|7461_1 403 QLCTEAAMQCIREKMDVIDLDDDEIDAEILDSMAVSQ--------------------------------------------EHFRT 444
                 5555555555555555555555555555444444443............................................34443 PP

  == domain 4    score: 2.1 bits;  conditional E-value: 0.19
   TIGR02237  17 iyGpggsGKtnialilave 35 
                 +yGp+g GKt +a  +a e
  MMETSP1137-20121227|7461_1 506 FYGPPGCGKTLLAKAIANE 524
                 7*********998666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1211 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       211  (0.0514383); expected 82.0 (0.02)
Passed bias filter:                      166  (0.0404681); expected 82.0 (0.02)
Passed Vit filter:                        45  (0.0109703); expected 4.1 (0.001)
Passed Fwd filter:                        25  (0.00609459); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              25  [number of targets reported over threshold]
# CPU time: 1.40u 0.20s 00:00:01.60 Elapsed: 00:00:01.32
# Mc/sec: 1210.90
//
Query:       MMETSP1137-20121227|7462_1  [L=611]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   1.2e-197  655.6   0.4   3.6e-129  429.8   0.1    2.1  2  TIGR00591 phr2: deoxyribodipyrimidine photolyase
    7.1e-18   62.6   0.0    4.4e-10   36.9   0.0    2.2  2  TIGR03556 photolyase_8HDF: deoxyribodipyrimidine photo-lyase, 8-HDF type
    1.4e-08   31.9   0.0     0.0014   15.4   0.0    2.2  2  TIGR02765 crypto_DASH: cryptochrome, DASH family
    1.8e-07   29.0   0.0    3.3e-07   28.1   0.0    1.4  1  TIGR01385 TFSII: transcription elongation factor S-II
    1.2e-06   25.5   0.0      4e-05   20.4   0.0    2.4  2  TIGR02766 crypt_chrom_pln: cryptochrome, plant family


Domain annotation for each model (and alignments):
>> TIGR00591  phr2: deoxyribodipyrimidine photolyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  224.1   0.0   1.1e-69     9e-67       3     208 ..       9     216 ..       7     304 .. 0.86
   2 !  429.8   0.1  4.4e-132  3.6e-129     195     453 .]     326     583 ..     309     583 .. 0.97

  Alignments for each domain:
  == domain 1    score: 224.1 bits;  conditional E-value: 1.1e-69
   TIGR00591   3 vkkkrirllsktekvkdssegvvywmsrdqrvqdnwaliyaqelalkeklPlavvfclvdkfldatirhykfllkGlrevakelkeldipfhlllgsakevlpkfveekkaaavvtDfsplriikqwveevakalpkdvplvqvdahnvvPvwaasdkleysartirgkikkllpefltelpkvelkak...sslktaeavdweealas 208
                 v  +r+r lsk  +v  +++gvvywmsrdqrvqdnwal++a +lal++ + l vvfclv++f +atirhy f+l+Gl+e ++el++ ++pf ll+g++ ++lp+f+++++++a+vtDf+p+ri+k w+++v ++lpk  p+++vdahn+vPvw+asdk+e++artir+ki+++lp++l+++p+ e  +k   s+ ++ +a d ++a +s
  MMETSP1137-20121227|7462_1   9 VAGNRVRALSKVSSVGSNAGGVVYWMSRDQRVQDNWALLHARSLALSHGVGLSVVFCLVPTFSEATIRHYGFMLRGLKECETELRSNGVPFKLLQGDPVKTLPEFARQHDVSAIVTDFAPTRINKIWKDGVCRELPK-TPVFEVDAHNIVPVWVASDKQEVGARTIRKKINDKLPQWLKDIPPFEPLEKggdSKASELPANDESSASSS 216
                 6679*********9*************************************************************************************************************************75.7********************************************99887764422222333333333333 PP

  == domain 2    score: 429.8 bits;  conditional E-value: 4.4e-132
   TIGR00591 195 ktaeavdweealaslkvdrevkevelakpGtkaglevleefiskrLklfeekrndPnkdalsnlsPylhfGqlsaqrvalevkrarsaesesvdefleelivrreLadnfcfynesydslkglyeWakktLkdhakDkreylYsleqlekaktaDklWnaaqlelveeGkmhgflrmyWakkiLeWtksPeealeiaiyLndkyelDGrDPngyvgvmWsicGvhDrgwaerevfGkvrymnyagckrkfnvaeyveky 453
                 + ++++dw ++ + l+vd++v ev+++ pG +a+l +l efi++rL+ f+ekrndPn +a s+lsPylhfGqlsaqr+al vk+  + +se +++flee++vrreL+dnf+fy+++ydsl+g+  Wa+ +L+ hakDkre++Y+leql+ka+t+++lWnaaq+++v +Gkmhgf+rmyWakkiLeW+ sP+ea ++aiyLnd+y+lDGrDPngyvg+ W+i G hD+gw er++fGk+r+mny+gckrkf++a+yv k+
  MMETSP1137-20121227|7462_1 326 ACEKPTDWAAVRKGLTVDMSVPEVDWCTPGSAAALVALDEFIKERLRIFAEKRNDPNVHASSDLSPYLHFGQLSAQRMALTVKKS-GGKSEGIASFLEEAVVRRELSDNFVFYQPNYDSLDGAAGWARDSLELHAKDKREHVYTLEQLDKAQTHEDLWNAAQRQMVATGKMHGFMRMYWAKKILEWSPSPAEAHKRAIYLNDRYSLDGRDPNGYVGIGWAIMGTHDMGWTERAIFGKIRFMNYNGCKRKFDIARYVAKW 583
                 567999*****************************************************************************87.778899********************************************************************************************************************************************************************997 PP

>> TIGR03556  photolyase_8HDF: deoxyribodipyrimidine photo-lyase, 8-HDF type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.5   0.0   6.2e-09   5.1e-06       3      95 ..      30     123 ..      28     132 .. 0.83
   2 !   36.9   0.0   5.4e-13   4.4e-10     205     354 ..     353     504 ..     338     510 .. 0.82

  Alignments for each domain:
  == domain 1    score: 23.5 bits;  conditional E-value: 6.2e-09
   TIGR03556   3 ilfwhrrdlrlsdnlglaaarq....ksakvvglfcldekilkaddiaparvayllgclqelqerykrlgsellilrgdpvqllpklakaleakavy 95 
                 +++w  rd r++dn +l +ar+    ++  +  +fcl +   +a   +     ++l  l+e + + +  g  + +l+gdpv+ lp++a++ + +a++
  MMETSP1137-20121227|7462_1  30 VVYWMSRDQRVQDNWALLHARSlalsHGVGLSVVFCLVPTFSEA---TIRHYGFMLRGLKECETELRSNGVPFKLLQGDPVKTLPEFARQHDVSAIV 123
                 689**************999862111444455589999987553...345579************************************99998875 PP

  == domain 2    score: 36.9 bits;  conditional E-value: 5.4e-13
   TIGR03556 205 epgeaaaeakleefvdkaieeyqeqrnfpaldgtsqlsaalkfgvigirtvwqatlealeasrseearesirtwqqelawre.fyqhalysfpeladgpyrekfkefpwenneahfq..awcegktgypivdaamrqlnetgwmhnrcrmiva 354
                 +pg aaa   l+ef+++ ++ + e+rn p ++ +s ls+ l+fg ++ +++  + ++   +s    ++ +  + ++el+    fyq   y   + a g  r++ +    +++e+ ++     +++t   + +aa rq+  tg mh   rm  a
  MMETSP1137-20121227|7462_1 353 TPGSAAALVALDEFIKERLRIFAEKRNDPNVHASSDLSPYLHFGQLSAQRMALTVKKSGGKSEGIASFLEEAVVRRELSDNFvFYQ-PNYDSLDGAAGWARDSLELHAKDKREHVYTleQLDKAQTHEDLWNAAQRQMVATGKMHGFMRMYWA 504
                 8***********************************************99988888877777666666666777888876541444.4455566677888888887777777766642256789**********************9999766 PP

>> TIGR02765  crypto_DASH: cryptochrome, DASH family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.0   3.8e-06    0.0031       3     107 ..      30     129 ..      28     163 .. 0.81
   2 !   15.4   0.0   1.7e-06    0.0014     210     350 ..     353     496 ..     316     505 .. 0.79

  Alignments for each domain:
  == domain 1    score: 14.2 bits;  conditional E-value: 3.8e-06
   TIGR02765   3 vlllfrndLRleDnellakasskee....elvpvyvfdarqiklsavaglaklGkarakFlaesvadLktsLkklGsdLlvragkpedvlkelvkelkvravflteeeg 107
                 v++++ +d R++Dn +l +a s +      l  v+++ ++  +    a +      +  F++  +++ +t+L++ G    +++g p + l+e +++ +v+a++++   +
  MMETSP1137-20121227|7462_1  30 VVYWMSRDQRVQDNWALLHARSLALshgvGLSVVFCLVPTFSE----ATI-----RHYGFMLRGLKECETELRSNGVPFKLLQGDPVKTLPEFARQHDVSAIVTDFAPT 129
                 89*************9999988765555567778888777665....222.....34569*****************************************99876655 PP

  == domain 2    score: 15.4 bits;  conditional E-value: 1.7e-06
   TIGR02765 210 kGGetsalarvkeyflskslksYketRngllgvdystklspwLalGcvsarqihealkrYekergends...tywvifeLlWRdyfrflalkygdklFrleGlrgkkaktkedek.....ilekwkegttgyplvdanmreLaatGyms 350
                   G  +al  ++e+ +++ l+ + e Rn   +v  s+ lsp+L +G +sa+ +  ++k+   ++    s      v+ eL   d f f++ +y d+l   +G +  + + + ++k      le+  +++t   l +a++r++ atG m 
  MMETSP1137-20121227|7462_1 353 TPGSAAALVALDEF-IKERLRIFAEKRNDP-NVHASSDLSPYLHFGQLSAQRMALTVKKSGGKSEGIASfleEAVVRREL--SDNFVFYQPNY-DSLDGAAGWARDSLELHAKDKrehvyTLEQLDKAQTHEDLWNAAQRQMVATGKMH 496
                 56777888888875.5677999******95.678899*****************99998654333222211123444454..58899999888.568888888777777766666677779*************************885 PP

>> TIGR01385  TFSII: transcription elongation factor S-II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.1   0.0   4.1e-10   3.3e-07      19      87 ..     237     307 ..     219     326 .. 0.82

  Alignments for each domain:
  == domain 1    score: 28.1 bits;  conditional E-value: 4.1e-10
   TIGR01385  19 nveqvidilkqLkklpvteellketkvGlkvnklrk.kpned.ikklakeliksWKkvvikeeksenpaga 87 
                 + ++  ++l++++++ vt e l et  G+ vn+++k k+  + + ++ak l+ +WK+ v k + +++++g 
  MMETSP1137-20121227|7462_1 237 DEDALGEALDVMEEVSVTREQLAETGAGKAVNEVAKcKSGTKpLRERAKALVAKWKEAVAKARAESDAGGG 307
                 45667799**************************983333446******************8777777764 PP

>> TIGR02766  crypt_chrom_pln: cryptochrome, plant family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.0     0.013        11       3      21 ..      31      49 ..      29     119 .. 0.82
   2 !   20.4   0.0   4.9e-08     4e-05     205     259 ..     353     407 ..     348     508 .. 0.65

  Alignments for each domain:
  == domain 1    score: 2.5 bits;  conditional E-value: 0.013
   TIGR02766  3 vvwfrrdlrvednpalaaa 21
                v w+ rd rv+dn al  a
  MMETSP1137-20121227|7462_1 31 VYWMSRDQRVQDNWALLHA 49
                78*************9765 PP

  == domain 2    score: 20.4 bits;  conditional E-value: 4.9e-08
   TIGR02766 205 spgwsnadklleefiekqlleysknrkkvdsastsllspylhfgevsvrkvfqlv 259
                 +pg   a  +l+efi++ l  ++++r+  +  ++s lspylhfg++s +++   v
  MMETSP1137-20121227|7462_1 353 TPGSAAALVALDEFIKERLRIFAEKRNDPNVHASSDLSPYLHFGQLSAQRMALTV 407
                 689999999**************************************98654433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (611 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       131  (0.0319356); expected 82.0 (0.02)
Passed bias filter:                      110  (0.0268162); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.49u 0.18s 00:00:00.67 Elapsed: 00:00:00.61
# Mc/sec: 1322.05
//
Query:       MMETSP1137-20121227|7463_1  [L=250]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (250 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        93  (0.0226719); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.15s 00:00:00.38 Elapsed: 00:00:00.44
# Mc/sec: 749.94
//
Query:       MMETSP1137-20121227|7464_1  [L=775]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (775 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       165  (0.0402243); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.48u 0.18s 00:00:00.65 Elapsed: 00:00:00.45
# Mc/sec: 2273.15
//
Query:       MMETSP1137-20121227|7465_1  [L=600]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.5e-81  269.9   0.0    1.2e-62  209.2   0.0    2.1  2  TIGR03633 arc_protsome_A: proteasome endopeptidase complex, archaeal, alpha subunit
    2.6e-17   60.9   0.0    1.4e-12   45.4   0.0    2.2  2  TIGR03634 arc_protsome_B: proteasome endopeptidase complex, archaeal, beta subunit


Domain annotation for each model (and alignments):
>> TIGR03633  arc_protsome_A: proteasome endopeptidase complex, archaeal, alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  209.2   0.0   5.8e-66   1.2e-62       1     229 [.      57     294 ..      57     295 .. 0.96
   2 !   58.7   0.0   5.9e-20   1.2e-16     130     229 ..     479     586 ..     470     587 .. 0.91

  Alignments for each domain:
  == domain 1    score: 209.2 bits;  conditional E-value: 5.8e-66
   TIGR03633   1 aaYDraitvfsPdGrlyqveYareavkr.gttavGiktkegvvlivdkritsklleaesiekifkiDdhvgaataGlvaDarvlidrarveaqvnrltYdepievevlakkvadlkqqytqvGGvrPfGvalliaGvddk....earlfetdPsGalleykavaiGagrekvlellekeyked....lsldeaielalkalakaleeelkaeevevavveveekkfrklskeevekll 229
                 a+YDr it+fsP+GrlyqveYa++a+k  g t+vG++ +++ v+ ++++i +kl ++es+  ++++ d++g +++G+v Dar+ + r r ea + ++ Y+  + v +lak+ adl q ytq+  +rP G+a++i G+d +     ++lf++dP+G ++ yka++ G+++++++++lek++k d    ls d++++lal+ l+++l ++lka+++e +vv +++ +f+kl+++e+e++l
  MMETSP1137-20121227|7465_1  57 AGYDRHITIFSPEGRLYQVEYAFKAIKTsGLTSVGVRGSDSAVVLTQRKIPDKLHDPESVTNMYHVTDKIGLVMTGIVPDARASVARLRAEAAQFKFDYGYDVPVGYLAKRAADLAQVYTQHANMRPLGIAMIIVGIDVEgdtmIPQLFRCDPAGYFVGYKATSAGQKEQEANNFLEKRFKTDpnpaLSYDDTVQLALACLQNVLGSDLKATDIEACVVRNSNLNFTKLTADELEHHL 294
                 59************************96489**********************************************************************************************************8653333689*********************************998666689********************************************99887 PP

  == domain 2    score: 58.7 bits;  conditional E-value: 5.9e-20
   TIGR03633 130 alliaGvddk....earlfetdPsGalleykavaiGagrekvlellekeyked....lsldeaielalkalakaleeelkaeevevavveveekkfrklskeevekll 229
                 a++i G+d +     ++lf++dP+G ++ yka++ G+++++++++lek++k d    ls d++++lal+ l+++l ++lka+++e +vv +++ +f+kl+++e+e++l
  MMETSP1137-20121227|7465_1 479 AMIIVGIDVEgdtmIPQLFRCDPAGYFVGYKATSAGQKEQEANNFLEKRFKTDpnpaLSYDDTVQLALACLQNVLGSDLKATDIEACVVRNSNLNFTKLTADELEHHL 586
                 89999998653323689*********************************998666689********************************************99887 PP

>> TIGR03634  arc_protsome_B: proteasome endopeptidase complex, archaeal, beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.4   0.0     7e-16   1.4e-12       2     169 ..      87     265 ..      86     279 .. 0.86
   2 !   13.3   0.0     5e-06      0.01      96     169 ..     476     557 ..     443     571 .. 0.81

  Alignments for each domain:
  == domain 1    score: 45.4 bits;  conditional E-value: 7e-16
   TIGR03634   2 tTtvGikvkdgvvlAadkraslgnlvasknvkKvfkiddkialtiaGsvgdaqslvrllkaeaklyelrrkkkisvkalatllsnll....ksskflpflvqllvgGvdeeg....pklyslDplGsiiedkytatGsGspvalgvLedeYeed....lsleeakklavkaiksaieRDv 169
                  T vG++ +d  v+ +++++  ++l   ++v+ +++++dki+l ++G+v da++ v  l+aea   ++  + +++v  la+ ++ l     ++ ++ p  + +++ G+d eg    p+l+  Dp+G ++  k t++G   + a   Le+++++d    ls +++++la+  +++ +  D 
  MMETSP1137-20121227|7465_1  87 LTSVGVRGSDSAVVLTQRKI-PDKLHDPESVTNMYHVTDKIGLVMTGIVPDARASVARLRAEAAQFKFDYGYDVPVGYLAKRAADLAqvytQHANMRPLGIAMIIVGIDVEGdtmiPQLFRCDPAGYFVGYKATSAGQKEQEANNFLEKRFKTDpnpaLSYDDTVQLALACLQNVLGSDL 265
                 699*******9999998776.59999*************************************************9888777666651111456899************987667789*********************************8765555999*******999988776665 PP

  == domain 2    score: 13.3 bits;  conditional E-value: 5e-06
   TIGR03634  96 flvqllvgGvdeeg....pklyslDplGsiiedkytatGsGspvalgvLedeYeed....lsleeakklavkaiksaieRDv 169
                  ++ +++ G+d eg    p+l+  Dp+G ++  k t++G   + a   Le+++++d    ls +++++la+  +++ +  D 
  MMETSP1137-20121227|7465_1 476 RFAAMIIVGIDVEGdtmiPQLFRCDPAGYFVGYKATSAGQKEQEANNFLEKRFKTDpnpaLSYDDTVQLALACLQNVLGSDL 557
                 45678888999876556689*********************************8765555999*******999988776665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (600 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        83  (0.020234); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.15s 00:00:00.55 Elapsed: 00:00:00.64
# Mc/sec: 1237.40
//
Query:       MMETSP1137-20121227|7466_1  [L=361]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.7e-24   82.3   0.0    7.6e-24   81.9   0.0    1.2  1  TIGR00717 rpsA: ribosomal protein S1
    3.6e-11   40.0   0.2    5.2e-10   36.2   0.3    2.0  2  TIGR03591 polynuc_phos: polyribonucleotide nucleotidyltransferase
  ------ inclusion threshold ------
      0.017   11.2   1.2      0.032   10.3   0.2    1.8  2  TIGR02063 RNase_R: ribonuclease R
      0.035   11.5   0.2      0.073   10.5   0.1    1.5  1  TIGR00448 rpoE: DNA-directed RNA polymerase


Domain annotation for each model (and alignments):
>> TIGR00717  rpsA: ribosomal protein S1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.9   0.0   7.4e-27   7.6e-24      56     261 ..     137     338 ..      78     354 .. 0.86

  Alignments for each domain:
  == domain 1    score: 81.9 bits;  conditional E-value: 7.4e-27
   TIGR00717  56 lelqvgdevevvlervedregetvlsrekaqrkeakiklekaeeeksiveGkivrkvKgGfiVdleGveaFLpgSqvdvkkvk..dleeligkelkfkilkldkkrenivvsrralleeerskkreelleklkegeevkGvVknitdfg...afvdlggvdgllhitdlswkrvkhPseivevgdevkvkvikvDkekkrislslkqlked 261
                  el++gd+ e+ +  v+ +   +  s  +aqr  a++++ +  +e+++ + ++ r   +G +V+le + aFLp S+  + + +  d+++lig  l++k+l  +  ++ +vvs r++       k e+ l +l +g++v G+V+++ +fg    ++dl+ +dgllhi+++s   v+    +  vg++++  vikvD   + i+ls k l++ 
  MMETSP1137-20121227|7466_1 137 TELETGDTFEALVTGVKGES--VNVSIAQAQRSVAWKRVAAIAQEDATYRSTVLRVGPAGATVELESMPAFLPWSHWRLTPEEraDKSKLIGSALDVKVLEANAANDRLVVSNRRV-------KVENRLGQLAPGQVVDGIVVSLKPFGaviRLMDLDDLDGLLHISQVSRTFVTDIATVFSVGEHIRCVVIKVDVSDGSIQLSTKMLEDK 338
                 56789*********999943..688999************************************************99876432267789**********************9987.......45566899******************43335699*************************************************99865 PP

>> TIGR03591  polynuc_phos: polyribonucleotide nucleotidyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    2.3   0.0     0.009       9.3     599     678 ..     163     238 ..     152     250 .. 0.67
   2 !   36.2   0.3   5.1e-13   5.2e-10     601     687 ..     244     333 ..     230     335 .. 0.86

  Alignments for each domain:
  == domain 1    score: 2.3 bits;  conditional E-value: 0.009
   TIGR03591 599 keaaekakklieeitaevevgkvyegkvvkiadfgafvellpgkdglvhiSelaeervekvedvlkegdevkvkvleidk 678
                 +++ + a k++    a ++ +++y+++v ++ + ga vel  +  +++  S+ + +  e+ ++   +g  + vkvle + 
  MMETSP1137-20121227|7466_1 163 QAQRSVAWKRVA---AIAQEDATYRSTVLRVGPAGATVELE-SMPAFLPWSHWRLTPEERADKSKLIGSALDVKVLEANA 238
                 333444444444...44566899***************974.55677777777766666666666678888888887765 PP

  == domain 2    score: 36.2 bits;  conditional E-value: 5.1e-13
   TIGR03591 601 aaekakklieeitaevevgkvyegkvvkiadfgafvellp..gkdglvhiSelaeervekvedvlkegdevkvkvleidk.kgrvklsrk 687
                  +++ + ++e+   +   g+v +g vv++++fga+++l+   + dgl+hiS+++++ v+++  v+++g++++  v+++d  +g ++ls+k
  MMETSP1137-20121227|7466_1 244 VVSNRRVKVENRLGQLAPGQVVDGIVVSLKPFGAVIRLMDldDLDGLLHISQVSRTFVTDIATVFSVGEHIRCVVIKVDVsDGSIQLSTK 333
                 555566677788888899********************8522779**********************************75899***998 PP

>> TIGR02063  RNase_R: ribonuclease R
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.0      0.51   5.2e+02     681     704 ..     219     242 ..     217     246 .. 0.77
   2 ?   10.3   0.2   3.1e-05     0.032     629     708 ..     262     331 ..     256     334 .. 0.84

  Alignments for each domain:
  == domain 1    score: -3.6 bits;  conditional E-value: 0.51
   TIGR02063 681 tgkvfrlGdevkvkvvevdkeekk 704
                  +k   +G +++vkv e++  + +
  MMETSP1137-20121227|7466_1 219 ADKSKLIGSALDVKVLEANAANDR 242
                 55666799*********9987765 PP

  == domain 2    score: 10.3 bits;  conditional E-value: 3.1e-05
   TIGR02063 629 GeefegvissvtsfGlFveLeen.tieGLvhissLkddyyefdeknlalvGertgkvfrlGdevkvkvvevdkeekkidfe 708
                 G++ +g+++s+  fG  ++L +    +GL his+++   ++               vf++G++++  v++vd  ++ i+++
  MMETSP1137-20121227|7466_1 262 GQVVDGIVVSLKPFGAVIRLMDLdDLDGLLHISQVSRT-FVT----------DIATVFSVGEHIRCVVIKVDVSDGSIQLS 331
                 8999**************99775379*******99832.222..........345699**************999999875 PP

>> TIGR00448  rpoE: DNA-directed RNA polymerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.1   7.1e-05     0.073      83     118 ..     263     301 ..     259     321 .. 0.85

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 7.1e-05
   TIGR00448  83 eiveGevieivefGafvs...lGplddllhvsqvlddyv 118
                 ++v+G v+ +  fGa ++   l  ld+llh+sqv   +v
  MMETSP1137-20121227|7466_1 263 QVVDGIVVSLKPFGAVIRlmdLDDLDGLLHISQVSRTFV 301
                 79***************95445667889*****987655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (361 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       125  (0.0304729); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.34u 0.16s 00:00:00.50 Elapsed: 00:00:00.98
# Mc/sec: 486.20
//
Query:       MMETSP1137-20121227|7467_1  [L=528]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (528 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        84  (0.0204778); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.16s 00:00:00.52 Elapsed: 00:00:00.67
# Mc/sec: 1040.15
//
Query:       MMETSP1137-20121227|7468_1  [L=866]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (866 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       143  (0.034861); expected 82.0 (0.02)
Passed bias filter:                       31  (0.00755729); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.50u 0.11s 00:00:00.61 Elapsed: 00:00:00.68
# Mc/sec: 1680.92
//
Query:       MMETSP1137-20121227|7469_1  [L=485]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (485 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       154  (0.0375427); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.14s 00:00:00.45 Elapsed: 00:00:00.50
# Mc/sec: 1280.29
//
Query:       MMETSP1137-20121227|7470_1  [L=694]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00025   17.8   0.2     0.0015   15.2   0.0    2.0  2  TIGR02928 TIGR02928: orc1/cdc6 family replication initiation protein
     0.0094   13.3   0.2      0.037   11.4   0.0    1.9  2  TIGR03420 DnaA_homol_Hda: DnaA regulatory inactivator Hda


Domain annotation for each model (and alignments):
>> TIGR02928  TIGR02928: orc1/cdc6 family replication initiation protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0   7.5e-07    0.0015      30      79 ..     246     295 ..     235     302 .. 0.90
   2 ?    0.6   0.0     0.022        45     196     240 ..     294     337 ..     291     339 .. 0.77

  Alignments for each domain:
  == domain 1    score: 15.2 bits;  conditional E-value: 7.5e-07
   TIGR02928  30 alkpilrgsrpsnvliyGktGtGKtavtkkvlkeleeaaeekdvrvstvy 79 
                  l  ++ g+  s vl+yG+tG GKt    ++++ ++++ +  +++v++v 
  MMETSP1137-20121227|7470_1 246 LLARVVGGEGDSTVLLYGQTGGGKTHNLLAFIRCVQAELDALGSAVEVVF 295
                 5788999*******************************999999998875 PP

  == domain 2    score: 0.6 bits;  conditional E-value: 0.022
   TIGR02928 196 vFppYdaeeLrdILeeRaekafkdgvlddeviplvaalaaqehGd 240
                 vF + + +   d+L+eR+++a++ +++d   ++ +a  +a + Gd
  MMETSP1137-20121227|7470_1 294 VFFEVGRNGCFDLLNERSKVALRADACDRVHVRGAATTTAST-GD 337
                 5555566666799**************988888877777665.65 PP

>> TIGR03420  DnaA_homol_Hda: DnaA regulatory inactivator Hda
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.4   0.0   1.8e-05     0.037      26      63 ..     244     281 ..     237     295 .. 0.85
   2 ?   -1.6   0.0      0.17   3.5e+02      26      83 ..     367     424 ..     359     437 .. 0.72

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 1.8e-05
   TIGR03420  26 laalrelaeakaerllylwGesgsGksHLLqAacaaae 63 
                 l  l +++ +++++++ l+G++g Gk+H L A+++ ++
  MMETSP1137-20121227|7470_1 244 LPLLARVVGGEGDSTVLLYGQTGGGKTHNLLAFIRCVQ 281
                 55677889999********************9988665 PP

  == domain 2    score: -1.6 bits;  conditional E-value: 0.17
   TIGR03420  26 laalrelaeakaerllylwGesgsGksHLLqAacaaaeeagksaiylplkelaqllve 83 
                 + a++ ++++++ rl+ l G++    +H +++ + ++e+a  +++ ++lk+  ++ +e
  MMETSP1137-20121227|7470_1 367 ILAVTFTSSGRTLRLVDLAGSERNYETHYMSSRQFQLESAAINTALMSLKRCLHAAAE 424
                 5555555666677777788888888899999999999999999999999888777654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (694 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        95  (0.0231594); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.16s 00:00:00.63 Elapsed: 00:00:01.06
# Mc/sec: 864.16
//
Query:       MMETSP1137-20121227|7471_1  [L=232]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (232 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        62  (0.0151146); expected 82.0 (0.02)
Passed bias filter:                       40  (0.00975134); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.13s 00:00:00.32 Elapsed: 00:00:00.45
# Mc/sec: 680.48
//
Query:       MMETSP1137-20121227|7472_1  [L=300]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (300 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        90  (0.0219405); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.15s 00:00:00.38 Elapsed: 00:00:00.88
# Mc/sec: 449.96
//
Query:       MMETSP1137-20121227|7473_1  [L=332]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (332 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       147  (0.0358362); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.17s 00:00:00.44 Elapsed: 00:00:00.35
# Mc/sec: 1252.01
//
Query:       MMETSP1137-20121227|7474_1  [L=655]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.3e-13   48.0   0.0    1.8e-13   47.5   0.0    1.1  1  TIGR01663 PNK-3'Pase: polynucleotide kinase 3'-phosphatase
    2.3e-10   37.1   0.0    3.5e-10   36.5   0.0    1.1  1  TIGR04075 bacter_Pnkp: polynucleotide kinase-phosphatase
    0.00067   16.4   0.0      0.001   15.8   0.0    1.2  1  TIGR01209 TIGR01209: RNA ligase, Pab1020 family
    0.00089   16.6   0.0      0.017   12.4   0.0    2.1  1  TIGR03574 selen_PSTK: L-seryl-tRNA(Sec) kinase
     0.0022   14.9   0.0     0.0033   14.3   0.0    1.2  1  TIGR00635 ruvB: Holliday junction DNA helicase RuvB
      0.006   13.2   0.0     0.0096   12.5   0.0    1.2  1  TIGR01241 FtsH_fam: ATP-dependent metallopeptidase HflB
     0.0075   13.0   0.0      0.013   12.1   0.0    1.3  1  TIGR00959 ffh: signal recognition particle protein
  ------ inclusion threshold ------
       0.01   12.9   0.1       0.02   12.0   0.0    1.5  1  TIGR03575 selen_PSTK_euk: L-seryl-tRNA(Sec) kinase
      0.032   11.7   0.0       0.06   10.8   0.0    1.4  1  TIGR01351 adk: adenylate kinases


Domain annotation for each model (and alignments):
>> TIGR01663  PNK-3'Pase: polynucleotide kinase 3'-phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.5   0.0     4e-16   1.8e-13     339     500 ..     203     367 ..     171     372 .. 0.80

  Alignments for each domain:
  == domain 1    score: 47.5 bits;  conditional E-value: 4e-16
   TIGR01663 339 dfeprsvsdsvslllpedlalldaspevvvavGlpGaGkstflkkflvsaG..ykivnadtlGstqrcltackraldsGkrvvvdntnvdaasrkkylqla...rekgvpcrcllltvtleqvkhniafrelsdsarikvkdmvlygykkkyeepaldeGfiailkv 500
                 d    + +ds +  +p ++a     p +v++vGlpGaGkstf +    s+   + +v +dtlG  +    a  +a   Gkr v+d  nv+   r+  l l     ++   c  + +++++e+     a+r    +         +  + k+ e p+ +eGf   + +
  MMETSP1137-20121227|7474_1 203 DVSNECAQDSQPRTQPSSQA--ARLPRLVMLVGLPGAGKSTFAEALAASTTveWTVVCQDTLGGRKATEDAILTAWRAGKRLVIDRCNVQQNERREMLSLVmngAARQAECVAVHFATPIEECTRRAALRTDHPTIGYGRGRSAVVSMSKRLEPPTTAEGFRETHII 367
                 55666778889999998887..46799*****************998876422789***************************************99988622246778899999**************965444444445566678899***********987765 PP

>> TIGR04075  bacter_Pnkp: polynucleotide kinase-phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.5   0.0   7.8e-13   3.5e-10      10     161 ..     228     373 ..     222     378 .. 0.78

  Alignments for each domain:
  == domain 1    score: 36.5 bits;  conditional E-value: 7.8e-13
   TIGR04075  10 lvvlvGasgsGkstfarkhfkptevlssdvfrglvsddendqsasadafdvleyiagkrlkrgkltvvdatnvqaedrkklvelare...ydvlpvaivldlpekvclernaaredr.dfgekvvrrqlkelrrslkk.lkreGfrkvyvlkseeev 161
                 lv+lvG  g+Gkstfa+   + t v  + v+++ +      ++a++da       agkr       v+d  nvq+++r+++++l  +    ++  va+ + +p + c+ r+a r+d+ ++g    r  + ++ + l+   + eGfr+ +++++ e+ 
  MMETSP1137-20121227|7474_1 228 LVMLVGLPGAGKSTFAEALAASTTVEWTVVCQDTL----GGRKATEDAIL-TAWRAGKR------LVIDRCNVQQNERREMLSLVMNgaaRQAECVAVHFATPIEECTRRAALRTDHpTIGYGRGRSAVVSMSKRLEPpTTAEGFRETHIITTDEDA 373
                 9****************999999887766666555....56788888852.23334555......59**************9997542225677899*******************95667666777777777776641689*********999875 PP

>> TIGR01209  TIGR01209: RNA ligase, Pab1020 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0   2.2e-06     0.001      74     211 ..     423     564 ..     404     585 .. 0.72

  Alignments for each domain:
  == domain 1    score: 15.8 bits;  conditional E-value: 2.2e-06
   TIGR01209  74 khFkdk.evvvEEKvnGYNvRivklg.gevyaltRgGfiCPftterlkdlldleilkdypdlvlcg......EvvGrenPYveedyeevkedlqfflFDikekktnrslpveeklelaekYglkhvellgkvtadeaveeikeive 211
                 + F  k +++vEEKv+G N+ +   +  ev a  R+ f+   t  + ++l  +  ++d++   lc       Ev   e  Y ++ + + + +  f  FDi +k+t r+ +v+e+ + + + +++ ++ + +   +   +e+ +++e
  MMETSP1137-20121227|7474_1 423 RFFDGKsTLTVEEKVDGANLGLSLTKnYEVRAQNRSHFVTSQTHSQFRQL--DTWIDDNS-WALCQllkpeeEVLFGEWCYAQHTVAYSHLPGLFLAFDIYNKRTRRFCSVDERDRRLCDLNIPVIRQITRQVFTS-QQELLDLLE 564
                 5665442789***********9888747999********88888777766..34455543.333322222336777788899999999996667888*****************9888889999998877654444.344555555 PP

>> TIGR03574  selen_PSTK: L-seryl-tRNA(Sec) kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.4   0.0   3.6e-05     0.017       1      22 [.     228     249 ..     228     372 .. 0.86

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 3.6e-05
   TIGR03574   1 liiltGlPgvGkstfskelakk 22 
                 l++l GlPg+Gkstf+ +la  
  MMETSP1137-20121227|7474_1 228 LVMLVGLPGAGKSTFAEALAAS 249
                 789***************9965 PP

>> TIGR00635  ruvB: Holliday junction DNA helicase RuvB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.0   7.3e-06    0.0033      32     106 ..     228     303 ..     216     308 .. 0.88

  Alignments for each domain:
  == domain 1    score: 14.3 bits;  conditional E-value: 7.3e-06
   TIGR00635  32 hvllyGPPGlGkttlakiiakelgvklkitsgpale.kpgDlaailtaleegdvlfiDeihrlskaveellypame 106
                  v+l+G PG Gk t+a+ +a+   v+  ++   +l  ++    ailta ++g  l iD     +++  e+l  +m+
  MMETSP1137-20121227|7474_1 228 LVMLVGLPGAGKSTFAEALAASTTVEWTVVCQDTLGgRKATEDAILTAWRAGKRLVIDRCNVQQNERREMLSLVMN 303
                 589*************************9999999625556679*****************99999*****99997 PP

>> TIGR01241  FtsH_fam: ATP-dependent metallopeptidase HflB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.5   0.0   2.1e-05    0.0096      85     117 ..     222     254 ..     213     260 .. 0.88

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 2.1e-05
   TIGR01241  85 GakiPkGvllvGpPGtGktLlakavaGeagvpf 117
                  a+ P+ v+lvG PG+Gk  +a a+a    v +
  MMETSP1137-20121227|7474_1 222 AARLPRLVMLVGLPGAGKSTFAEALAASTTVEW 254
                 699***********************9888865 PP

>> TIGR00959  ffh: signal recognition particle protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.1   0.0   2.9e-05     0.013      93     122 ..     220     249 ..     210     270 .. 0.83

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 2.9e-05
   TIGR00959  93 klaekkpavillvGLqGsGKtttaaKlakk 122
                 ++a++ p  ++lvGL G+GK t+a  la+ 
  MMETSP1137-20121227|7474_1 220 SQAARLPRLVMLVGLPGAGKSTFAEALAAS 249
                 55667899*******************986 PP

>> TIGR03575  selen_PSTK_euk: L-seryl-tRNA(Sec) kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   4.3e-05      0.02       1      24 [.     228     251 ..     228     271 .. 0.84

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 4.3e-05
   TIGR03575   1 lcvlcGlpaaGkstlarslsatlr 24 
                 l +l Glp+aGkst+a +l+a   
  MMETSP1137-20121227|7474_1 228 LVMLVGLPGAGKSTFAEALAASTT 251
                 5689***************98654 PP

>> TIGR01351  adk: adenylate kinases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00013      0.06       2      25 ..     229     252 ..     228     257 .. 0.89

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 0.00013
   TIGR01351   2 lvllGpPGsGKGTqakrlaeklgl 25 
                 ++l+G PG+GK+T a+ la ++++
  MMETSP1137-20121227|7474_1 229 VMLVGLPGAGKSTFAEALAASTTV 252
                 689***************987765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (655 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       215  (0.0524135); expected 82.0 (0.02)
Passed bias filter:                      196  (0.0477816); expected 82.0 (0.02)
Passed Vit filter:                        59  (0.0143832); expected 4.1 (0.001)
Passed Fwd filter:                         9  (0.00219405); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.64u 0.17s 00:00:00.81 Elapsed: 00:00:00.52
# Mc/sec: 1662.56
//
Query:       MMETSP1137-20121227|7475_1  [L=94]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (94 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        36  (0.00877621); expected 82.0 (0.02)
Passed bias filter:                       36  (0.00877621); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.15s 00:00:00.28 Elapsed: 00:00:00.27
# Mc/sec: 459.52
//
Query:       MMETSP1137-20121227|7476_1  [L=402]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (402 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       133  (0.0324232); expected 82.0 (0.02)
Passed bias filter:                      102  (0.0248659); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.09s 00:00:00.41 Elapsed: 00:00:00.60
# Mc/sec: 884.33
//
Query:       MMETSP1137-20121227|7477_1  [L=214]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (214 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       134  (0.032667); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.12s 00:00:00.31 Elapsed: 00:00:00.31
# Mc/sec: 911.15
//
Query:       MMETSP1137-20121227|7478_1  [L=223]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (223 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        99  (0.0241346); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.13s 00:00:00.33 Elapsed: 00:00:00.40
# Mc/sec: 735.84
//
Query:       MMETSP1137-20121227|7479_1  [L=371]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (371 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        45  (0.0109703); expected 82.0 (0.02)
Passed bias filter:                       40  (0.00975134); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.14s 00:00:00.41 Elapsed: 00:00:00.31
# Mc/sec: 1579.61
//
Query:       MMETSP1137-20121227|7481_1  [L=606]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.071    8.5  24.6       0.11    7.9  17.0    1.2  1  TIGR00927 2A1904: K+-dependent Na+/Ca+ exchanger
        1.4    5.0  10.4        1.9    4.5   7.2    1.2  1  TIGR00934 2a38euk: potassium uptake protein, Trk family


Domain annotation for each model (and alignments):
>> TIGR00927  2A1904: K+-dependent Na+/Ca+ exchanger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9  17.0   5.5e-05      0.11     748     912 ..     222     380 ..     199     394 .. 0.63

  Alignments for each domain:
  == domain 1    score: 7.9 bits;  conditional E-value: 5.5e-05
   TIGR00927 748 vaeaeakgertgeeaeaeteaegekdeesggeaeqegeseekaeeeseGeieaerkgedegegeieakeaevkGeeeeeeveaeeeteaeG.dedegeieaeeeGeekededegeieakeevevegdedeteieaeeeaevkeded.eGeieaeedgevkGdegeeq 912
                  a a+   e+ ++e+ a+ ea++   + +    ++  ++  kae + eG+++++  g+ e e++++++++ ++     +e ++++++++e  +e + ei++e++ e k d  ++e +  +++e+ ++e++  +  ++++ ++++ +   + + +e  e +G+e + +
  MMETSP1137-20121227|7481_1 222 NATAR---EHASKEHVAAREANASSVHAHARADANATGAHVKAEPKAEGKTDGKTDGKAEAETHVKSEKSSHEAA---HEHHSSSGSKPESkAESKSEIKTESKSESKSDG-KSESKPAHHAEAAAHEQHPSHSHSTHGSSHSSSHdSHDSHGHESHESHGHESK-S 380
                 22222...2333344444455555555555555566777888999999999988888888888888888777666...333333444444313667888888888888776.66666668888888888877777777766655440456677777888887763.3 PP

>> TIGR00934  2a38euk: potassium uptake protein, Trk family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   7.2   0.00091       1.9     333     447 ..     263     374 ..     176     419 .. 0.49

  Alignments for each domain:
  == domain 1    score: 4.5 bits;  conditional E-value: 0.00091
   TIGR00934 333 skavrlersktidraeasdleeldrakdfqkmveknvkaakrk.kknfkkreanlklfeksryakksdrneedngn..........kkdasksneseevsldseenayptyndeeedsrhalskte 447
                  ka + +  kt ++aea ++ +++++      +e+ ++ ++ + +k   k e ++++ ++s++++ksd + e+++           +            s +++ +++++ +d+++   h+ ++ +
  MMETSP1137-20121227|7481_1 263 PKAEGKTDGKTDGKAEAETHVKSEKSS-----HEAAHEHHSSSgSKPESKAESKSEIKTESKSESKSDGKSESKPAhhaeaaaheqH---------PSHSHSTHGSSHSSSHDSHDSHGHESHESH 374
                 233333333333333333333333333.....2222222222202223333444555555555555555555555532223332111.........111222222333333333332222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (606 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       151  (0.0368113); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.18s 00:00:00.70 Elapsed: 00:00:00.52
# Mc/sec: 1538.18
//
Query:       MMETSP1137-20121227|7482_1  [L=281]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.072    8.5  24.8      0.095    8.1  17.2    1.1  1  TIGR00927 2A1904: K+-dependent Na+/Ca+ exchanger
       0.27    7.7  12.4       0.34    7.4   8.6    1.1  1  TIGR01651 CobT: cobaltochelatase, CobT subunit
        1.3    5.1  13.1        1.7    4.8   9.1    1.1  1  TIGR02442 Cob-chelat-sub: cobaltochelatase subunit
          3    4.2  10.8        3.7    3.9   7.5    1.0  1  TIGR00437 feoB: ferrous iron transport protein B
        4.4    3.3  10.9        5.5    3.0   7.5    1.0  1  TIGR00934 2a38euk: potassium uptake protein, Trk family
        5.5    3.0  12.2        6.8    2.7   8.5    1.0  1  TIGR00596 rad1: DNA repair protein (rad1)


Domain annotation for each model (and alignments):
>> TIGR00927  2A1904: K+-dependent Na+/Ca+ exchanger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1  17.2   0.00014     0.095     906    1005 ..      27     125 ..       7     135 .. 0.54

  Alignments for each domain:
  == domain 1    score: 8.1 bits;  conditional E-value: 0.00014
   TIGR00927  906 GdegeeqkveaeeeeeedekdegeedeeeiaddeevkdetgeqelnaenqgeakedekGvdgeggsdGGdseeeeeeeee.eeeeeeeeeeeeeeeeenee 1005
                   d++++++ +ae+  e++ k+++ +++ e a  e+  + ++ ++++ e +g a  ++kG +g+++    ++eeeeeeee+ eee    e eeeeee  + e
  MMETSP1137-20121227|7482_1   27 VDKKAKKALKAEGAVEKKIKKQKTDKKIEEAVVESIPEVKKIKKAKKEAKGSADSEKKGKKGKKDKK--KAEEEEEEEEKmEEEAPAAEAEEEEEETAEPE 125 
                  3333444444555555444444444444444455555555666677777777777777766655444..44444444444233333344444444444444 PP

>> TIGR01651  CobT: cobaltochelatase, CobT subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   8.6   0.00049      0.34     161     257 ..      23     122 ..       7     149 .. 0.70

  Alignments for each domain:
  == domain 1    score: 7.4 bits;  conditional E-value: 0.00049
   TIGR01651 161 lrefieekaakdldr...lsaaiddqqafarvvrellaslelaeelgddeesed.eedtdddqpredeqeeegeeeeegdeasaaeeaeaaeeeeesgeee 257
                 + e +++ka+k l+    +  +i++q++  ++   ++ s+   +++  ++++++ + d++++  +++++++++eeeee++e    eea aae eee+ e+ 
  MMETSP1137-20121227|7482_1  23 MGEKVDKKAKKALKAegaVEKKIKKQKTDKKIEEAVVESIPEVKKIKKAKKEAKgSADSEKKGKKGKKDKKKAEEEEEEEE-KMEEEAPAAEAEEEEEETA 122
                 5678999999999752225669******************99999998865555055666666666666666666555554.5556666666666555543 PP

>> TIGR02442  Cob-chelat-sub: cobaltochelatase subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   9.1    0.0025       1.7     308     400 ..      64     136 ..      11     160 .. 0.40

  Alignments for each domain:
  == domain 1    score: 4.8 bits;  conditional E-value: 0.0025
   TIGR02442 308 hRrrrkpfeeeqekeekkleekkeeakpdeekedeseekekeeskkqeeeepgkddekeedekeeaeeeaesaeevalepagkifrvkllavs 400
                   ++ k  ++e  k + + e+k ++ k+d                   +++ ++++e+ee+ +eea + + + ee ++++ + +f++++ a++
  MMETSP1137-20121227|7482_1  64 EVKKIKKAKKE-AKGSADSEKKGKKGKKD-------------------KKKAEEEEEEEEKMEEEAPAAEAEEEEEETAEPEPTFKIHKKAAP 136
                 11111111111.11111111111111111...................111111111111111111111111223333333333443333333 PP

>> TIGR00437  feoB: ferrous iron transport protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   7.5    0.0054       3.7     144     236 ..      39     132 ..      22     159 .. 0.57

  Alignments for each domain:
  == domain 1    score: 3.9 bits;  conditional E-value: 0.0054
   TIGR00437 144 eelkkaideekaiklvekkkraieilkeaeslaevkeklk...elkqklkkglevleglleeraleiekiekelaevvkkesesklsateiadeek 236
                  +++k+i+++k+ k+   ++ ++e ++e+++++++k+++k     ++k kkg+++ ++  ee+  e +  e++ a+ ++ e+e+ ++ + +++++k
  MMETSP1137-20121227|7482_1  39 GAVEKKIKKQKTDKK--IEEAVVESIPEVKKIKKAKKEAKgsaDSEKKGKKGKKDKKKAEEEEEEEEKMEEEAPAAEAEEEEEETAEPEPTFKIHK 132
                 355677774444444..4444555555555555555544410044444466666655555555555555555667777777777777777777753 PP

>> TIGR00934  2a38euk: potassium uptake protein, Trk family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   7.5     0.008       5.5     346     445 ..      23     132 ..       5     149 .. 0.49

  Alignments for each domain:
  == domain 1    score: 3.0 bits;  conditional E-value: 0.008
   TIGR00934 346 raeasdleeldrakdfqkmveknvkaakrkkk...nfkkreanlklfeksryakksdrneedngn.kkdasksneseevsldseenayptyndeee.......dsrhalsk 445
                 + e+ d +  +  k  +  vek++k++k++kk    ++++  + k ++k++ + k + + e++g+  k+  k+ e+ee +++++e++ p+ + eee       +++++ +k
  MMETSP1137-20121227|7482_1  23 MGEKVDKKAKKALK-AEGAVEKKIKKQKTDKKieeAVVESIPEVKKIKKAKKEAKGSADSEKKGKkGKKDKKKAEEEEEEEEKMEEEAPAAEAEEEeeetaepEPTFKIHK 132
                 44444443333333.333444444443333330003333444444444444444444444444442444444555555555666656666555555455665555555554 PP

>> TIGR00596  rad1: DNA repair protein (rad1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   8.5    0.0099       6.8     329     444 ..      28     141 ..       6     163 .. 0.58

  Alignments for each domain:
  == domain 1    score: 2.7 bits;  conditional E-value: 0.0099
   TIGR00596 329 lrklrqyrkqreklkklakevkkkeaakenassrvnktlrkekvaskrrrvrgakeaaveklreeetdevqvvekdeeleeeldeleegeaaeeeaandskifeikdeledidiss 444
                  +k+++  k  + ++k  k+ k+ ++ +e +++    +++k k+a+k  +  + +e+  +k ++++ ++ +  e++e++eee    e  e++ee a+++  +f+i+++   +++++
  MMETSP1137-20121227|7482_1  28 DKKAKKALKAEGAVEKKIKKQKTDKKIEEAVVE-SIPEVKKIKKAKKEAKGSADSEKKGKKGKKDKKKAEEEEEEEEKMEEEAPAAEAEEEEEETAEPEP-TFKIHKKAAPVELED 141
                 234444444444444444444444333333333.444555656665555544445555566666666677777888888888665555555555555555.888888887777666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (281 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       490  (0.119454); expected 82.0 (0.02)
Passed bias filter:                      170  (0.0414432); expected 82.0 (0.02)
Passed Vit filter:                        32  (0.00780107); expected 4.1 (0.001)
Passed Fwd filter:                        12  (0.0029254); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.40u 0.19s 00:00:00.59 Elapsed: 00:00:00.49
# Mc/sec: 756.92
//
Query:       MMETSP1137-20121227|7483_1  [L=398]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (398 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       128  (0.0312043); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.14s 00:00:00.42 Elapsed: 00:00:00.44
# Mc/sec: 1193.90
//
Query:       MMETSP1137-20121227|7484_1  [L=217]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (217 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        90  (0.0219405); expected 82.0 (0.02)
Passed bias filter:                       35  (0.00853242); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                        10  (0.00243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.12s 00:00:00.56 Elapsed: 00:00:00.55
# Mc/sec: 520.76
//
Query:       MMETSP1137-20121227|7485_1  [L=261]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.7e-08   29.4   0.1    1.6e-07   28.7   0.0    1.3  1  TIGR00601 rad23: UV excision repair protein Rad23


Domain annotation for each model (and alignments):
>> TIGR00601  rad23: UV excision repair protein Rad23
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.7   0.0   3.9e-11   1.6e-07      12      97 ..     119     206 ..     117     228 .. 0.75

  Alignments for each domain:
  == domain 1    score: 28.7 bits;  conditional E-value: 3.9e-11
   TIGR00601  12 kfkidlepdetvkelKekiesekgkda.yev.aqqkLiyaGkiLsDdktvkeykikekdfvvvmvskkKavkakaaePaatpesaptp 97 
                  +k+ +e ++tv+++Ke   ++ g  a  +  +q ++i++G+ LsD+kt+k+++i e++ v + +  k++ + ++ + +a  +  p+ 
  MMETSP1137-20121227|7485_1 119 DIKLTMEQSTTVLQVKEAALAQWGAGAtLPTlQQLRIIHQGRFLSDEKTLKDSRIPEGETVAMHLIIKQTETKQTDAEKAGDDKTPKC 206
                 57899************98888776652565155689**********************99887766666664555555544444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (261 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        82  (0.0199902); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.22u 0.12s 00:00:00.34 Elapsed: 00:00:00.35
# Mc/sec: 984.26
//
Query:       MMETSP1137-20121227|7486_1  [L=1136]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1136 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       145  (0.0353486); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.69u 0.15s 00:00:00.84 Elapsed: 00:00:00.85
# Mc/sec: 1764.00
//
Query:       MMETSP1137-20121227|7487_1  [L=186]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (186 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        96  (0.0234032); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.15s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 876.78
//
Query:       MMETSP1137-20121227|7488_1  [L=75]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (75 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        12  (0.0029254); expected 82.0 (0.02)
Passed bias filter:                       11  (0.00268162); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.18s 00:00:00.30 Elapsed: 00:00:00.36
# Mc/sec: 274.98
//
Query:       MMETSP1137-20121227|7489_1  [L=517]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (517 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        98  (0.0238908); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.14s 00:00:00.47 Elapsed: 00:00:00.66
# Mc/sec: 1033.91
//
Query:       MMETSP1137-20121227|7490_1  [L=818]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (818 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       132  (0.0321794); expected 82.0 (0.02)
Passed bias filter:                       97  (0.023647); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.50u 0.15s 00:00:00.65 Elapsed: 00:00:00.65
# Mc/sec: 1661.03
//
Query:       MMETSP1137-20121227|7491_1  [L=447]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (447 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       112  (0.0273038); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.23s 00:00:00.48 Elapsed: 00:00:00.33
# Mc/sec: 1787.85
//
Query:       MMETSP1137-20121227|7492_1  [L=111]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (111 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        63  (0.0153584); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.13s 00:00:00.28 Elapsed: 00:00:00.31
# Mc/sec: 472.61
//
Query:       MMETSP1137-20121227|7493_1  [L=297]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (297 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        73  (0.0177962); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.12s 00:00:00.36 Elapsed: 00:00:00.41
# Mc/sec: 956.12
//
Query:       MMETSP1137-20121227|7495_1  [L=137]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (137 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        67  (0.0163335); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.11s 00:00:00.28 Elapsed: 00:00:00.28
# Mc/sec: 645.80
//
Query:       MMETSP1137-20121227|7496_1  [L=378]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   2.4e-133  441.8   0.4   2.8e-133  441.6   0.3    1.0  1  TIGR01139 cysK: cysteine synthase A
   3.3e-130  431.6   0.2   3.8e-130  431.4   0.1    1.0  1  TIGR01136 cysKM: cysteine synthases
    3.2e-90  300.4   0.2    4.5e-90  299.9   0.1    1.2  1  TIGR01138 cysM: cysteine synthase B
    9.4e-88  292.7   0.9    1.2e-87  292.4   0.6    1.0  1  TIGR01137 cysta_beta: cystathionine beta-synthase
    3.9e-67  224.3   0.0    4.8e-67  224.0   0.0    1.1  1  TIGR03945 PLP_SbnA_fam: 2,3-diaminopropionate biosynthesis protein SbnA
    4.5e-15   53.3   0.6      1e-14   52.2   0.4    1.5  1  TIGR01127 ilvA_1Cterm: threonine dehydratase
    6.8e-15   52.4   0.8    2.9e-14   50.4   0.5    1.7  1  TIGR01124 ilvA_2Cterm: threonine ammonia-lyase, biosynthetic
    3.3e-14   50.3   0.7    3.6e-13   46.9   0.5    2.0  1  TIGR02079 THD1: threonine dehydratase
    1.1e-09   35.8   0.0    1.8e-05   21.9   0.0    2.1  2  TIGR00260 thrC: threonine synthase
    2.6e-08   31.1   2.0      4e-06   23.8   0.1    2.1  2  TIGR02991 ectoine_eutB: ectoine utilization protein EutB
     0.0032   14.4   1.5      0.014   12.3   0.0    2.4  3  TIGR00263 trpB: tryptophan synthase, beta subunit
     0.0087   12.7   0.2      0.022   11.4   0.0    1.6  2  TIGR03844 cysteate_syn: cysteate synthase
  ------ inclusion threshold ------
      0.012   12.2   0.5        4.3    3.8   0.0    2.9  3  TIGR01415 trpB_rel: pyridoxal-phosphate dependent TrpB-like enzyme
      0.016   11.8   0.0      0.024   11.3   0.0    1.2  1  TIGR01747 diampropi_NH3ly: diaminopropionate ammonia-lyase family
      0.025   11.0   0.0      0.037   10.4   0.0    1.2  1  TIGR03528 2_3_DAP_am_ly: diaminopropionate ammonia-lyase


Domain annotation for each model (and alignments):
>> TIGR01139  cysK: cysteine synthase A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  441.6   0.3    1e-135  2.8e-133       1     298 []      60     361 ..      60     361 .. 0.98

  Alignments for each domain:
  == domain 1    score: 441.6 bits;  conditional E-value: 1e-135
   TIGR01139   1 iseliGntPlvrLn.laeeakaevlvkleslnPsssvkdrialamiedaekegllkkgk.tiveatsGntGialamvaaargykliltmpetmslerrkllkayGaelvLtdgaegmkgaiekaeelveetpnkylllkqfenpanpeihrkttapeilkdldgkldafvagvGtGGtitGvgevlkekkpdikvvavePaespvlsgg.kpgphkiqGigagfiPkvLdkevidevikvsdeeaietarrlakeeGilvGissGaavaaalkvakkle.kdkkivvilpdtgerYlstaLf 298
                 i+eliGntP+++L   +++ +a +l k+es++P++svkdri+++mi++ae++g +++g  t+ve+tsGntGialamvaaa+gy+liltmpe+ms+err +lka+Ga+lvLt++a+gm ga++kae++v+  ++k  ll+qf+n  np+ihr+tt+pei+ d+dg++d+fvagvGtGGtitG ++++k  kp+ k va eP++spvlsgg ++gphkiqGigagfiP ++d +++devi+vsd++a +tar+la++eGi+ GissGa+v+aa  +a ++e k+k+iv+i+p++gerYlst L+
  MMETSP1137-20121227|7496_1  60 ITELIGNTPMLKLSrTVTGLDATILCKMESFEPCNSVKDRIGYSMITEAERRGEITPGVtTLVEPTSGNTGIALAMVAAAKGYELILTMPESMSMERRVMLKALGAKLVLTPAAKGMGGAVKKAEQIVAGLGDKGKLLQQFNNIDNPKIHRETTGPEIWADTDGAIDIFVAGVGTGGTITGCAQYIKPLKPECKFVALEPVSSPVLSGGkHQGPHKIQGIGAGFIPGNVDLSMVDEVIQVSDDDACATARELAAKEGIMCGISSGASVFAAKALAARPEnKGKTIVCIIPSFGERYLSTVLY 361
                 689***********8999****************************************879**************************************************************************************************************************************************993579****************************************************************999********************98 PP

>> TIGR01136  cysKM: cysteine synthases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  431.4   0.1  1.4e-132  3.8e-130       1     299 []      60     361 ..      60     361 .. 0.99

  Alignments for each domain:
  == domain 1    score: 431.4 bits;  conditional E-value: 1.4e-132
   TIGR01136   1 ieeliGntPlvrln.lseelkaevlvKlEsrnPsgSvKdRialsmildAekrgllkkgk.tiieatSGNtGiaLAmvaaakgyklilvmpetmslERrkllkayGaelvlteaeegmkgaiekakelaeeepekyvllkqfeNpaNpeaHrkttgpEilkdtdgkidafvagvGtgGtitGvgrvlkekkpnvkivavePaespvlseg.kpgphkiqgigagfiPkildeelldevikvededaietarrlakeegilvGiSsGaavaaalkvakklekedkkivvilpdagerYLstelf 299
                 i+eliGntP+++l    ++l+a++l K+Es++P++SvKdRi++smi++Ae+rg++++g  t++e+tSGNtGiaLAmvaaakgy+lil+mpe+ms+ERr +lka+Ga+lvlt+a++gm ga++ka+++++  ++k++ll+qf+N +Np++Hr+ttgpEi++dtdg id+fvagvGtgGtitG ++++k  kp+ k va+eP +spvls+g ++gphkiqgigagfiP + d +++devi+v+d+da++tar+la++egi++GiSsGa v+aa  +a ++e+++k+iv+i+p++gerYLst l+
  MMETSP1137-20121227|7496_1  60 ITELIGNTPMLKLSrTVTGLDATILCKMESFEPCNSVKDRIGYSMITEAERRGEITPGVtTLVEPTSGNTGIALAMVAAAKGYELILTMPESMSMERRVMLKALGAKLVLTPAAKGMGGAVKKAEQIVAGLGDKGKLLQQFNNIDNPKIHRETTGPEIWADTDGAIDIFVAGVGTGGTITGCAQYIKPLKPECKFVALEPVSSPVLSGGkHQGPHKIQGIGAGFIPGNVDLSMVDEVIQVSDDDACATARELAAKEGIMCGISSGASVFAAKALAARPENKGKTIVCIIPSFGERYLSTVLY 361
                 689***********999*****************************************769**************************************************************************************************************************************************994579**************************************************************************************998 PP

>> TIGR01138  cysM: cysteine synthase B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  299.9   0.1   1.6e-92   4.5e-90       2     290 .]      60     361 ..      59     361 .. 0.92

  Alignments for each domain:
  == domain 1    score: 299.9 bits;  conditional E-value: 1.6e-92
   TIGR01138   2 ilklvGntplvrlkrllpeedsevlvklegnnpaGsvkdrpalsmiveaekrGeikeG.dvlieatsGntGialamvaalkGykvkllmpdnvseerkaalkayGaelilvdkeeGmeGardlarelvrk..geeklldqfnnpdnpkahytstGieiwqqtkGrithfvsslGttGtimGvsrflkeqnpavqivGlqpaegsaieGlrr........ieseylpgifdaslvdrvvdveqedaediarelakkegifvGvssGgavaaalrlarelek..avvvaiicdrGdrylstgvf 290
                 i++l+Gntp+++l r  +  d+++l k+e+++p+ svkdr   smi+eae+rGei +G  +l+e tsGntGialamvaa+kGy+++l mp+ +s er+ +lka Ga+l+l+   +Gm Ga++ a+++v     ++kll+qfnn dnpk h  +tG+eiw  t+G i  fv+++Gt+Gti+G ++++k  +p+ + v l+p  +  + G ++        i + + pg  d s+vd+v++v  +da  +arela kegi++G+ssG++v+aa  la   e+    +v+ii+  G+rylst ++
  MMETSP1137-20121227|7496_1  60 ITELIGNTPMLKLSRTVTGLDATILCKMESFEPCNSVKDRIGYSMITEAERRGEITPGvTTLVEPTSGNTGIALAMVAAAKGYELILTMPESMSMERRVMLKALGAKLVLTPAAKGMGGAVKKAEQIVAGlgDKGKLLQQFNNIDNPKIHRETTGPEIWADTDGAIDIFVAGVGTGGTITGCAQYIKPLKPECKFVALEPVSSPVLSGGKHqgphkiqgIGAGFIPGNVDLSMVDEVIQVSDDDACATARELAAKEGIMCGISSGASVFAAKALAARPENkgKTIVCIIPSFGERYLSTVLY 361
                 789*******************************************************5579*****************************************************************986225677****************************************************************9987777655422222112567789*********************************************99998655544589***************987 PP

>> TIGR01137  cysta_beta: cystathionine beta-synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  292.4   0.6   4.3e-90   1.2e-87       1     311 [.      56     361 ..      56     374 .. 0.94

  Alignments for each domain:
  == domain 1    score: 292.4 bits;  conditional E-value: 4.3e-90
   TIGR01137   1 iadnildliGntPlvrlnkvskglkaevlakveffnaGGsvkdrialrmiedaeksGrlkpg.dtliePtsGntGiGlalvaaikGykciivlPekvseekvdvlkalGaeivrtPtaaafdsPesyigvakrlekei.pgavildqyanasnPlahydttgeeileqlegkldalvagvGtGGtitGiarklkekedkvrivGadPeGs.ilaepeelnktektdykveGiGydfiPtvldrkvvdeiiktddkesfkmarrlikeegllvgGssGsavvaalkvaeeelkeddvivvllpdsirnyltkfln 311
                 ia++i +liGntP+++l + + gl a++l k+e f +  svkdri+ +mi +ae+ G++ pg  tl+ePtsGntGi la+vaa kGy  i+++Pe +s e++ +lkalGa +v tP+a  +      +  a++++  + +    l q++n +nP+ h +ttg+ei+++++g +d +vagvGtGGtitG a+++k  +++++ v  +P  s +l+++      ++ ++k++GiG  fiP  +d ++vde+i+++d+++   ar+l+++eg+++g ssG++v aa   a++  ++++ iv ++p  +  yl+ +l 
  MMETSP1137-20121227|7496_1  56 IAESITELIGNTPMLKLSRTVTGLDATILCKMESFEPCNSVKDRIGYSMITEAERRGEITPGvTTLVEPTSGNTGIALAMVAAAKGYELILTMPESMSMERRVMLKALGAKLVLTPAAKGMG---GAVKKAEQIVAGLgDKGKLLQQFNNIDNPKIHRETTGPEIWADTDGAIDIFVAGVGTGGTITGCAQYIKPLKPECKFVALEPVSSpVLSGG-----KHQGPHKIQGIGAGFIPGNVDLSMVDEVIQVSDDDACATARELAAKEGIMCGISSGASVFAAKALAARPENKGKTIVCIIPSFGERYLSTVLY 361
                 5789**********************************************************99****************************************************987765...56788888888873567789**************************************************************998799999.....66779**************************************************************9999*****************98774 PP

>> TIGR03945  PLP_SbnA_fam: 2,3-diaminopropionate biosynthesis protein SbnA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  224.0   0.0   1.8e-69   4.8e-67       1     303 [.      60     365 ..      60     366 .. 0.93

  Alignments for each domain:
  == domain 1    score: 224.0 bits;  conditional E-value: 1.8e-69
   TIGR03945   1 ilsligntplvkleklfedekvelfaKlEglnpagSvKdrtAlallekaikegeikpg.ttiiESsSGnlaiaLamvcaalGlkficvvDpkiseanlkllralgaevevveekdetggyLkaRlarvrellaeipdavwlNQYaneanaeahyettaeeileelk.evdylfvgvsttGtlaGvarrlrekspevkvvavDavGSvif..ggepgkRlipGlGasvvpelldeslidevvkvseletvaacrelleregilaGgSsGtvvaavkkllak.ieegstvvailpDrGerYldtv.YddeW 303
                 i++ligntp++kl+++++  ++++ +K+E+++p +SvKdr  ++++++a+++gei+pg tt++E +SGn +iaLamv+aa+G+++i  +   +s + + +l+alga++++      +gg +k+  + v  l ++      l Q++n +n++ h ett+ ei ++ +  +d +++gv+t+Gt++G+a++++  +pe k va++ v S ++  g+++g+ +i G+Ga+  p  +d s++dev++vs+ ++ a++rel+++egi+ G SsG+ v a+k+l+a+  ++g+t+v+i+p  GerYl+tv Y + W
  MMETSP1137-20121227|7496_1  60 ITELIGNTPMLKLSRTVTGLDATILCKMESFEPCNSVKDRIGYSMITEAERRGEITPGvTTLVEPTSGNTGIALAMVAAAKGYELILTMPESMSMERRVMLKALGAKLVLTPAAKGMGGAVKKAEQIVAGLGDKG---KLLQQFNNIDNPKIHRETTGPEIWADTDgAIDIFVAGVGTGGTITGCAQYIKPLKPECKFVALEPVSSPVLsgGKHQGPHKIQGIGAGFIPGNVDLSMVDEVIQVSDDDACATARELAAKEGIMCGISSGASVFAAKALAARpENKGKTIVCIIPSFGERYLSTVlYANLW 365
                 5789******************************************************99************************************************999999999998887777666665544...4689**************************************************************99666334567889*************************************************************956667*****************8466666 PP

>> TIGR01127  ilvA_1Cterm: threonine dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.2   0.4   3.6e-17     1e-14      12     282 ..      78     349 ..      67     374 .. 0.78

  Alignments for each domain:
  == domain 1    score: 52.2 bits;  conditional E-value: 3.6e-17
   TIGR01127  12 itgaevylklenlqktGsfkirGalnkiaklseeek.krGvva...asaGnhaqGvalaakvfgikakivmPesaplskvkatksyGaeviLh..GadfDeayklaeelaeeegr..vfvhafd..DefviaGqGtlgleiledl.pdvdtvivPvGGGGLisGvasavkklnpevkviGveaeaapslveslkegkikavesvktiaDGiavkkpgdltfeivkelvDevvavdeeeiakaillLlerakivae.gaGavgvaa.vleekvdvkgkkvavvvs 282
                   +a +  k+e++    s k r  +  i+++   ++ + Gv +    ++Gn     a+ a   g +  + mPes  +++    k++Ga+ +L    + +  a k ae++ +  g    +++ f+  D+  i  + t g ei +d+ + +d+ ++ vG GG i+G a  +k l+pe k + +e  ++p l    + gk +  ++ + i  G     pg    ++   +vDev++v++++ +     L  ++ i+   ++Ga   aa  l+ + ++kgk+++ ++ 
  MMETSP1137-20121227|7496_1  78 GLDATILCKMESFEPCNSVKDRIGYSMITEAERRGEiTPGVTTlvePTSGNTGIALAMVAAAKGYELILTMPESMSMERRVMLKALGAKLVLTpaAKGMGGAVKKAEQIVAGLGDkgKLLQQFNniDNPKI-HRETTGPEIWADTdGAIDIFVAGVGTGGTITGCAQYIKPLKPECKFVALEPVSSPVL----SGGKHQGPHKIQGIGAGFI---PG----NVDLSMVDEVIQVSDDDACATARELAAKEGIMCGiSSGASVFAAkALAARPENKGKTIVCIIP 349
                 3568899**********************99877652567755222689**99999999*********************************8224568899999*9998865432257888873333333.5678999**9886379********************************999888865....5677777777777777764...44....566789********99998888889999999876267877777646999999*****999884 PP

>> TIGR01124  ilvA_2Cterm: threonine ammonia-lyase, biosynthetic
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.4   0.5   1.1e-16   2.9e-14      13     300 ..      62     347 ..      54     353 .. 0.78

  Alignments for each domain:
  == domain 1    score: 50.4 bits;  conditional E-value: 1.1e-16
   TIGR01124  13 eaavetplekaaklserlknrvllkredlqpvfsfklrGaynkmaqlsae.qkakGvia...asaGnhaqGvalsakklGvkavivmpettpeikvdavkafGgevvlh......Genydeakakalelaqe.kgltfiapfddplviaGqGtvalellrqveedldavfvpvGGGGliaGvaalvkqllpeikvigveaedsaalkqaleaGervkldqvGlfadGvavkevGdetfrlckeylddivlvdtdevcaaikdvfedtravlepaGalalaGlkkyvakkgiedktlvai 300
                 e   +tp+ k ++  + l+ ++l k e   p +s k r  y+++++  +  + + Gv +    ++Gn    +a+ a+  G + ++ mpe+ +  +   +ka G+++vl       G + ++a++ +  l ++ k l   +  d+p++   + t + e+   ++  +d     vG GG i+G a ++k l+pe k +++e+  s +l    ++G   k++ +G    G      G+  +     ++d++++v  d+ ca+ +++  +   +   +   ++   k+ +a+ + ++kt+v i
  MMETSP1137-20121227|7496_1  62 ELIGNTPMLKLSRTVTGLDATILCKMESFEPCNSVKDRIGYSMITEAERRgEITPGVTTlvePTSGNTGIALAMVAAAKGYELILTMPESMSMERRVMLKALGAKLVLTpaakgmGGAVKKAEQIVAGLGDKgKLLQQFNNIDNPKI--HRETTGPEIWADTDGAIDIFVAGVGTGGTITGCAQYIKPLKPECKFVALEPVSSPVLSGGKHQGP-HKIQGIGA---GFI---PGNVDL----SMVDEVIQVSDDDACATARELAAKEGIMCGISSGASVFAAKALAARPENKGKTIVCI 347
                 66678999999999999***************************998765155667755222689***9999******************99999999**********633333355667777777777655155677888888887..57899*******99888877778*******************************99988877774.35555553...222...233333....468999999999999998888776666666555556666677777777777777766 PP

>> TIGR02079  THD1: threonine dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.9   0.5   1.3e-15   3.6e-13       7     302 ..      57     348 ..      53     357 .. 0.82

  Alignments for each domain:
  == domain 1    score: 46.9 bits;  conditional E-value: 1.3e-15
   TIGR02079   7 kkrlkevvketPlqknerlsekykaeiylkredlqevrsyklrGaynklkqlsdeel.e...kgvvcasaGnhaqGvayacrklgvkgtvfmPvttPkqkvdkvklfGgefievilvGdtfdeaaaaakkavek..egktlipPfddkdiie.GqgtvaveileqleeekidlvlvpvGGGGlisGvtsylkekskktkiigvePeGapslkaslkagevvtldkidkfvdGaavkrvGdlnfkalkkvvdevtlveegavcstildlynkegivaePaGalsiaaleels..eeikgktvvcvv 302
                 ++ + e++ +tP+ k +r     +a+i+ k e ++   s k r  y ++++    +       ++v  ++Gn    +a    + g +  + mP      ++  +k  G + + +    +    a  +a++ v+   ++ +l++ f++ d  +  + t + ei  + + + id+ +++vG GG i+G + y+k   ++ k++ +eP  +p l+   ++g   +++ i           +G +  ++  ++vdev++v+++  c+t  +l  kegi+   +   s+ a + l+   e kgkt+vc++
  MMETSP1137-20121227|7496_1  57 AESITELIGNTPMLKLSRTVTGLDATILCKMESFEPCNSVKDRIGYSMITEAERRGEiTpgvTTLVEPTSGNTGIALAMVAAAKGYELILTMPESMSMERRVMLKALGAKLV-LTPAAKGMGGAVKKAEQIVAGlgDKGKLLQQFNNIDNPKiHRETTGPEIWADTDGA-IDIFVAGVGTGGTITGCAQYIKPLKPECKFVALEPVSSPVLSGGKHQGP-HKIQGIG----------AGFIPGNVDLSMVDEVIQVSDDDACATARELAAKEGIMCGISSGASVFAAKALAarPENKGKTIVCII 348
                 678999*********99999*****************************877665441411145678899***99999999999************************9877.455667788899999999885225678999998655433146789*******9997.***************************************9998877664.4444442..........23333444557899************************998777777776666523567899*****9 PP

>> TIGR00260  thrC: threonine synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.9   0.0   6.7e-08   1.8e-05      21     110 ..      65     153 ..      51     208 .. 0.82
   2 !   12.0   0.0   6.7e-05     0.018     270     331 ..     294     348 ..     252     354 .. 0.84

  Alignments for each domain:
  == domain 1    score: 21.9 bits;  conditional E-value: 6.7e-08
   TIGR00260  21 gstelfrspklaeevgaenlyvkelfhgPtlaFKDrglqfvavlltkalelgne.....tvlcAtsGdtgaaaaealagkanvkvvvLyPkgkis 110
                 g+t++++  +    + a  + +k ++  P  + KDr      +++t+a  +g+      t++  tsG+tg a+a + a+ ++ + +  +P+  +s
  MMETSP1137-20121227|7496_1  65 GNTPMLKLSRTVTGLDA-TILCKMESFEPCNSVKDRI---GYSMITEAERRGEItpgvtTLVEPTSGNTGIALA-MVAAAKGYELILTMPES-MS 153
                 56666666666666666.9*****************9...56778888888877778889999***********.**********9999987.55 PP

  == domain 2    score: 12.0 bits;  conditional E-value: 6.7e-05
   TIGR00260 270 edlkesvsdeeileaikklaeeegyllephtavavaalkklvekgvsatadpaKFeevveal 331
                 +++  +vsd++   + ++la++eg+++   ++++v a k l++        ++K +++v+++
  MMETSP1137-20121227|7496_1 294 DEV-IQVSDDDACATARELAAKEGIMCGISSGASVFAAKALAARP------ENKGKTIVCII 348
                 444.589*******************************9998865......44446666655 PP

>> TIGR02991  ectoine_eutB: ectoine utilization protein EutB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.8   0.1   1.5e-08     4e-06       9     199 ..      56     256 ..      48     262 .. 0.76
   2 !    6.7   0.1    0.0024      0.65     247     301 ..     291     347 ..     282     352 .. 0.79

  Alignments for each domain:
  == domain 1    score: 23.8 bits;  conditional E-value: 1.5e-08
   TIGR02991   9 aaeriagrveetplveseslsellGvpvllklesrqttGsfklrGatnavlslsd.aeraaGv...vaastGnhGralayaakkegvravicmselvpqnkvdeirrlGaevriv..Grsqddaqeeverlvk...erG..lvmlppfdhadivaGqGtlglevveqvpdlalvlvp.lsGGGlasGvavavkalkpatrviG 199
                  ae i+  + +tp+ + +     l   +l k+es ++  s k r     +   +  +e + Gv   v  ++Gn G ala  a+++g + ++ m e + +++   ++ lGa++ +    +    a ++ e++v+   ++G  l      d+++i   + t g e+ ++   +  ++v  +  GG ++G a  +k lkp+ + + 
  MMETSP1137-20121227|7496_1  56 IAESITELIGNTPMLKLSRTVTGLDATILCKMESFEPCNSVKDRIGYSMITEAERrGEITPGVttlVEPTSGNTGIALAMVAAAKGYELILTMPESMSMERRVMLKALGAKLVLTpaAKGMGGAVKKAEQIVAglgDKGklLQQFNNIDNPKI--HRETTGPEIWADTDGAIDIFVAgVGTGGTITGCAQYIKPLKPECKFVA 256
                 567788888899999888888888899999************99888777665541344445511166789***************************************9977521233345555555555522123322556777788887..57899*****99988776666527889****************99876 PP

  == domain 2    score: 6.7 bits;  conditional E-value: 0.0024
   TIGR02991 247 elldeivllsedeiaagirhayaeereive.GaGavGiaa.llaGkikvkGpivvlv 301
                 +++de++ +s+d+  a+ r   a+e  +    +Ga  +aa  la + ++kG+++v +
  MMETSP1137-20121227|7496_1 291 SMVDEVIQVSDDDACATARELAAKEGIMCGiSSGASVFAAkALAARPENKGKTIVCI 347
                 589**********99999998888877654245665555537999999999987755 PP

>> TIGR00263  trpB: tryptophan synthase, beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.1      0.22        59     103     131 ..     122     150 ..     116     185 .. 0.78
   2 ?   -2.6   0.0       1.7   4.7e+02     220     255 ..     226     262 ..     214     295 .. 0.71
   3 !   12.3   0.0   5.2e-05     0.014     320     382 ..     297     360 ..     281     363 .. 0.88

  Alignments for each domain:
  == domain 1    score: 0.4 bits;  conditional E-value: 0.22
   TIGR00263 103 aetGaGqhGvatataaallglecevymGa 131
                  e  +G  G+a a++aa+ g e+ + m +
  MMETSP1137-20121227|7496_1 122 VEPTSGNTGIALAMVAAAKGYELILTMPE 150
                 467789***********999998887754 PP

  == domain 2    score: -2.6 bits;  conditional E-value: 1.7
   TIGR00263 220 daviacvGGGsnaiGifaafie..deeveligveagGk 255
                 d+ +a vG G    G+ a++i+  ++e +++++e+  +
  MMETSP1137-20121227|7496_1 226 DIFVAGVGTGGTITGC-AQYIKplKPECKFVALEPVSS 262
                 8889999998877765.667775566677777776554 PP

  == domain 3    score: 12.3 bits;  conditional E-value: 5.2e-05
   TIGR00263 320 eaitdeealealkllskeeGiipalesshalaaleklapklk.kdeivvvnlsGrGdkdletva 382
                  +++d++a ++ + l+ +eGi+  + s  ++ a++ la++ + k +++v+ +   G++ l+tv 
  MMETSP1137-20121227|7496_1 297 IQVSDDDACATARELAAKEGIMCGISSGASVFAAKALAARPEnKGKTIVCIIPSFGERYLSTVL 360
                 5799***********************9999999988887665999999999999999888875 PP

>> TIGR03844  cysteate_syn: cysteate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.4   0.0   8.1e-05     0.022     118     152 ..     119     153 ..      97     191 .. 0.75
   2 ?   -1.9   0.0      0.86   2.4e+02     175     191 ..     303     319 ..     287     352 .. 0.54

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 8.1e-05
   TIGR03844 118 kvlvvasaGntgrafaevsaltgkpvvlvvPesav 152
                  +lv  ++Gntg a+a v+a  g++++l +Pes  
  MMETSP1137-20121227|7496_1 119 TTLVEPTSGNTGIALAMVAAAKGYELILTMPESMS 153
                 56677789***********************9853 PP

  == domain 2    score: -1.9 bits;  conditional E-value: 0.86
   TIGR03844 175 daiklaekiaalpGlvp 191
                 da ++a+++aa++G++ 
  MMETSP1137-20121227|7496_1 303 DACATARELAAKEGIMC 319
                 34444444444444332 PP

>> TIGR01415  trpB_rel: pyridoxal-phosphate dependent TrpB-like enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.0      0.02       5.5      80     177 ..      76     174 ..      53     189 .. 0.72
   2 ?    1.6   0.0     0.069        19     245     294 ..     225     270 ..     205     275 .. 0.78
   3 ?    3.8   0.0     0.016       4.3     348     407 ..     297     356 ..     287     367 .. 0.79

  Alignments for each domain:
  == domain 1    score: 3.4 bits;  conditional E-value: 0.02
   TIGR01415  80 llgtkariyyksesvsptGshkintaiaqayyakke.....GvkrlvtetGaGqWGsalslaaalldlkvkvfmvrvsfkqkpyrkllmelygaevipsPsel 177
                 + g +a i  k+es  p  s k     + +  a +      Gv +lv e  +G  G al++ aa  + +  + m ++     + r++++++ ga+ + +P+ +
  MMETSP1137-20121227|7496_1  76 VTGLDATILCKMESFEPCNSVKDRIGYSMITEAERRgeitpGVTTLV-EPTSGNTGIALAMVAAAKGYELILTMPES---MSMERRVMLKALGAKLVLTPAAK 174
                 44566788888888888888886655444444443301111555554.6678*************9*9999988775...356799*********99999865 PP

  == domain 2    score: 1.6 bits;  conditional E-value: 0.069
   TIGR01415 245 PdvivgcvGGGsnfaglafPfvadklsGkedlkfiaaeskaaPkltkGey 294
                  d+ v+ vG G   +g a   ++  l  k ++kf+a e+ + P l+ G++
  MMETSP1137-20121227|7496_1 225 IDIFVAGVGTGGTITGCAQY-IK-PL--KPECKFVALEPVSSPVLSGGKH 270
                 58888888888888877643.33.34..45699************99976 PP

  == domain 3    score: 3.8 bits;  conditional E-value: 0.016
   TIGR01415 348 eaydqeevfeaavlfakaeGivPaPesahaiavaideakkareegkekvilfslsGhGll 407
                  +++ +++ ++a+ +a  eGi+    s  ++ +a+  a + +++gk  v ++   G  +l
  MMETSP1137-20121227|7496_1 297 IQVSDDDACATARELAAKEGIMCGISSGASVFAAKALAARPENKGKTIVCIIPSFGERYL 356
                 5678899999**************999999999999998888888777766665565555 PP

>> TIGR01747  diampropi_NH3ly: diaminopropionate ammonia-lyase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   8.7e-05     0.024      94     147 ..     118     171 ..      95     200 .. 0.83

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 8.7e-05
   TIGR01747  94 datfvtatdGnhGrGvawaaeklGqkavvympkGsaqeraeniekeGaevtitd 147
                  +t+v  t Gn G  +a  a   G + ++ mp   ++er   ++  Ga+ ++t 
  MMETSP1137-20121227|7496_1 118 VTTLVEPTSGNTGIALAMVAAAKGYELILTMPESMSMERRVMLKALGAKLVLTP 171
                 4688999******************************************99875 PP

>> TIGR03528  2_3_DAP_am_ly: diaminopropionate ammonia-lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   0.00014     0.037     113     165 ..     118     170 ..      95     188 .. 0.86

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 0.00014
   TIGR03528 113 ditfvtatdGnhGrGvawaanklgqksvvymPkGsaqerlenirkeGaeatit 165
                   t+v  t Gn G  +a  a   g + ++ mP   + er+  +++ Ga+ ++t
  MMETSP1137-20121227|7496_1 118 VTTLVEPTSGNTGIALAMVAAAKGYELILTMPESMSMERRVMLKALGAKLVLT 170
                 4688999*****************************************99877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (378 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       129  (0.0314481); expected 82.0 (0.02)
Passed bias filter:                       99  (0.0241346); expected 82.0 (0.02)
Passed Vit filter:                        26  (0.00633837); expected 4.1 (0.001)
Passed Fwd filter:                        15  (0.00365675); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.46u 0.19s 00:00:00.65 Elapsed: 00:00:00.84
# Mc/sec: 593.95
//
Query:       MMETSP1137-20121227|7497_1  [L=709]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (709 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       105  (0.0255973); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.15s 00:00:00.61 Elapsed: 00:00:00.91
# Mc/sec: 1028.35
//
Query:       MMETSP1137-20121227|7498_1  [L=241]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.014   12.5   0.3      0.018   12.0   0.0    1.4  2  TIGR03005 ectoine_ehuA: ectoine/hydroxyectoine ABC transporter, ATP-binding protein EhuA


Domain annotation for each model (and alignments):
>> TIGR03005  ectoine_ehuA: ectoine/hydroxyectoine ABC transporter, ATP-binding protein EhuA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.0      0.29   1.2e+03     142     162 ..      64      84 ..      62      86 .. 0.80
   2 ?   12.0   0.0   4.5e-06     0.018     156     202 ..     151     198 ..     109     222 .. 0.84

  Alignments for each domain:
  == domain 1    score: -3.7 bits;  conditional E-value: 0.29
   TIGR03005 142 alpaqlsGGqkqrvaiarala 162
                 a p  l   q+q va  ra a
  MMETSP1137-20121227|7498_1  64 ASPQTLPREQEQLVAAVRAAA 84 
                 567888889999999999876 PP

  == domain 2    score: 12.0 bits;  conditional E-value: 4.5e-06
   TIGR03005 156 aiaralalrpkvl.lfdevtsaldpelveevlnvlrrlasetdltmll 202
                 a+ + la  p+   l d v+++l+ ++ e   +v+rrla+e+ +t  l
  MMETSP1137-20121227|7498_1 151 ALQKFLANTPRTTnLVDRVATSLERQVEERAASVVRRLAAEEAMTHAL 198
                 7778899999964499****************************9866 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (241 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       365  (0.088981); expected 82.0 (0.02)
Passed bias filter:                      177  (0.0431497); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.26u 0.17s 00:00:00.43 Elapsed: 00:00:00.50
# Mc/sec: 636.19
//
Query:       MMETSP1137-20121227|7499_1  [L=412]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.2e-27   95.1   0.1    1.6e-27   94.6   0.1    1.2  1  TIGR00401 msrA: peptide-methionine (S)-S-oxide reductase


Domain annotation for each model (and alignments):
>> TIGR00401  msrA: peptide-methionine (S)-S-oxide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.6   0.1     4e-31   1.6e-27       2      76 ..     206     280 ..     205     331 .. 0.88

  Alignments for each domain:
  == domain 1    score: 94.6 bits;  conditional E-value: 4e-31
   TIGR00401   2 kitfalGCfWgveklfrkidgvektkvGylngktenPtyeevCsgdtghaevvkveydpkvvsleeLldvffevi 76 
                 ++tfa+GCfWg+e ++++ +gv +t+vGy++g+ e+P+y +vC gdtgh+e+v+v +dp  vs+e L d+f+e  
  MMETSP1137-20121227|7499_1 206 EATFAGGCFWGLELAYQREPGVISTAVGYTQGHXEDPSYAQVCNGDTGHTEAVQVLFDPALVSFERLCDLFWERL 280
                 69**********************************************************************975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (412 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        97  (0.023647); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.30u 0.16s 00:00:00.46 Elapsed: 00:00:00.41
# Mc/sec: 1326.33
//
Query:       MMETSP1137-20121227|7500_1  [L=631]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.1e-07   25.5   0.0    1.5e-06   24.4   0.0    1.4  1  TIGR02956 TMAO_torS: TMAO reductase sytem sensor TorS
      1e-05   22.5   0.0    1.9e-05   21.7   0.0    1.3  1  TIGR02966 phoR_proteo: phosphate regulon sensor kinase PhoR
    0.00095   15.6   0.0     0.0012   15.3   0.0    1.1  1  TIGR02916 PEP_his_kin: putative PEP-CTERM system histidine kinase


Domain annotation for each model (and alignments):
>> TIGR02956  TMAO_torS: TMAO reductase sytem sensor TorS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.4   0.0   1.1e-09   1.5e-06     513     691 ..     204     380 ..     196     387 .. 0.85

  Alignments for each domain:
  == domain 1    score: 24.4 bits;  conditional E-value: 1.1e-09
   TIGR02956 513 ldiLnDiLDySkiEaG.hlsiserafdlskLledvlhlmesraqekgiqLsleidedlpevlqgDlsrirQvliNlvgNaiKFTd.rGsvvlrvslndds.llfeVeDtGvGiaeeeqetlFkaftqaegrkksgGTGLGLAiskrlveamdgelsveSelgkGScFafelplergkkaeks 691
                  ++ +  L  Sk+ aG +l  ++++fdls+Ll++v  + +  a +k+i+ ++ +  ++  ++   +  +  +l  l   a K T   Gsv+++ +  +ds + ++V D   G+ e+    lF+a        k      GL  +++l ++++g+++ + +l +G  F +e+p+    +a+++
  MMETSP1137-20121227|7500_1 204 TTMVDKGLRSSKLKAGdELRPKSTPFDLSELLDKVASVARDHAGAKKIEVKTRVALNISPTVYCACDWLFMILSSLAFDATKRTVvGGSVTISAKRVGDSrVKIKVSDPDGGVTEQ---GLFSARHSRGSSLKQE--YPGLQHARELTNLIGGDIGYQRTLPHGGAFYIEVPMRMLPQASSA 380
                 4555556778******99******************************************************************7257*****98777777************986...6898865554333233..3477888***************************99766555554 PP

>> TIGR02966  phoR_proteo: phosphate regulon sensor kinase PhoR
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.7   0.0   1.4e-08   1.9e-05     164     276 ..     203     319 ..     190     323 .. 0.88

  Alignments for each domain:
  == domain 1    score: 21.7 bits;  conditional E-value: 1.4e-08
   TIGR02966 164 mqsLvedLltLsrlEsa.akekeeekvdvaelleelkkeaealseekehqielev..daavkvkgdeeeLrsalsNLveNAikytpeggeitvrweeeeeg.aelsvkDtGeGIaae 276
                 + ++v++ l  s+l +  + + +++++d++ell+++++ a+ ++  k+++++++v  + + +v  + + L  +ls L   A k t  gg++t+++++  ++ ++++v+D   G+ ++
  MMETSP1137-20121227|7500_1 203 LTTMVDKGLRSSKLKAGdELRPKSTPFDLSELLDKVASVARDHAGAKKIEVKTRValNISPTVYCACDWLFMILSSLAFDATKRTVVGGSVTISAKRVGDSrVKIKVSDPDGGVTEQ 319
                 6778888889999998735578899**********************999998884467788**********************************998877*******99998776 PP

>> TIGR02916  PEP_his_kin: putative PEP-CTERM system histidine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0     9e-07    0.0012     530     678 ..     215     369 ..     200     370 .. 0.73

  Alignments for each domain:
  == domain 1    score: 15.3 bits;  conditional E-value: 9e-07
   TIGR02916 530 qLrekgl.eeekkavdlvdllervieskraqkprievsv..dkdl....evradrerlervlghLvqNAleATeeeGkVkirverek.eaavieieDsGqGmseeFirerLFkPFdttKk..aGmGiGvyesreyveelGGeieveStpgkGtiftlvl 678
                 +L+ +++ + +++ +dl++ll++v   +r +    +++v    +l    +v    + l  +l+ L+  A   T   G+V+i+++r + ++++i+++D   G++e+     LF+  ++  +  +    G+  +re+ + +GG+i  + t  +G  f + +
  MMETSP1137-20121227|7500_1 215 KLKAGDElRPKSTPFDLSELLDKVASVARDHAGAKKIEVktRVALnispTVYCACDWLFMILSSLAFDATKRTVVGGSVTISAKRVGdSRVKIKVSDPDGGVTEQG----LFSARHSRGSslKQEYPGLQHARELTNLIGGDIGYQRTLPHGGAFYIEV 369
                 677766667788899*******99876665554444444103334111145567789999*************************99899*************987....5655444332223334567788888888888888887777777776665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (631 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        94  (0.0229157); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.46u 0.15s 00:00:00.61 Elapsed: 00:00:00.83
# Mc/sec: 1003.44
//
Query:       MMETSP1137-20121227|7501_1  [L=658]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.9e-20   70.8   0.0    1.6e-09   34.8   0.0    2.2  2  TIGR00962 atpA: ATP synthase F1, alpha subunit
    1.5e-18   64.6   0.2    7.1e-10   36.0   0.0    2.4  2  TIGR03324 alt_F1F0_F1_al: alternate F1F0 ATPase, F1 subunit alpha
      1e-12   45.4   0.2    2.8e-07   27.4   0.0    2.3  2  TIGR02546 III_secr_ATP: type III secretion apparatus H+-transporting two-sector ATPase
    1.5e-12   44.8   0.1    2.7e-06   24.3   0.0    2.3  2  TIGR03496 FliI_clade1: flagellar protein export ATPase FliI
    2.2e-11   40.9   0.1    2.4e-06   24.3   0.0    2.2  2  TIGR03498 FliI_clade3: flagellar protein export ATPase FliI
    2.8e-09   34.0   0.0    0.00023   17.9   0.0    2.2  2  TIGR01026 fliI_yscN: ATPase FliI/YscN family
    8.5e-07   26.1   0.0     0.0059   13.4   0.0    2.2  2  TIGR03497 FliI_clade2: flagellar protein export ATPase FliI
     0.0056   13.0   0.0       0.33    7.1   0.0    2.2  2  TIGR01041 ATP_syn_B_arch: ATP synthase archaeal, B subunit
     0.0066   13.2   0.1     0.0096   12.6   0.0    1.2  1  TIGR00767 rho: transcription termination factor Rho


Domain annotation for each model (and alignments):
>> TIGR00962  atpA: ATP synthase F1, alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.8   0.0   3.5e-12   1.6e-09      25     171 ..      63     220 ..      52     242 .. 0.75
   2 !   33.7   0.0   7.8e-12   3.5e-09     335     500 ..     490     656 ..     486     658 .] 0.83

  Alignments for each domain:
  == domain 1    score: 34.8 bits;  conditional E-value: 3.5e-12
   TIGR00962  25 eevGtvvsvadGiakveG..lenvlskeliefeggvkgialnleedsvGvvilGdyseikeGsevkrtgevlev...pvGdallGrvvnalGepidGkGd.....ieseefsavekkaPgv..ierksvkePlqtGikaidaliPiGrGqreliiGdrq 171
                 ++ Gt+++v d +a +     +++ ++ +++f+gg +g  l +e+  +  + l d s   +G+ v  +g  l      + d+    v +alG+ +d  G      ++ e  +a e  + +v    r+ ++ Pl+tG+ aidal+PiG Gq  l++G   
  MMETSP1137-20121227|7501_1  63 QKLGTLIRVQDDLAVIAAepAAEAAAGSMLSFDGGARGTLL-FERCGLFFAALLDGSAADDGEAVCLAGGNLTCaapALSDEAWAGVFDALGNRVDLDGTqqaggMNVEGSTAAEVFSETVpqAARRPINMPLHTGVVAIDALTPIGMGQSMLVLGPDA 220
                 6789999999987776541177889999*********9866.788888888888999999**999988765544122478999999*******998665411111445555555555554432579*****************************9543 PP

  == domain 2    score: 33.7 bits;  conditional E-value: 7.8e-12
   TIGR00962 335 visitdGqiflesdlfnsGirPainvGlsvsrvGg.......aaqikaikkvaGslrlelaqyreleafsqfasdldeatkkqlerGkrlvellkqeqskPlsveeqvvilyavtkgylddipve....kvakfeeelleyldkekkelleeikkkkklteeleeklkevleefkkk 500
                 ++s+ dG i l+ +l  +G  P ++   s++r+G        a+ + a++ v+ +lrlela  ++         +  eat++     +    +l q + +Plsv e+v++l+a+++g ldd   +    ++ ++ + + + + +  ++ll +i++++ l++e +e l+++l +++++
  MMETSP1137-20121227|7501_1 490 LVSLVDGHIDLRENLAAQGRIPPVDPSNSLTRIGVgshklrpASSTEAMRTVTRALRLELAAAAD-----PVHCEAAEATRA-----AAHAAVLTQRDPAPLSVGEEVALLFAASEGLLDDAAASadatQLDELVRGICDAVAAADADLLPKITRSGYLSDEQAEALRSILTKYVAQ 656
                 79******************************8842244444678999**********9996443.....344555666665.....455789***************************975432111677788889999******************************999876 PP

>> TIGR03324  alt_F1F0_F1_al: alternate F1F0 ATPase, F1 subunit alpha
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.4   0.0   1.2e-09   5.6e-07     104     171 ..     152     219 ..      53     296 .. 0.82
   2 !   36.0   0.0   1.6e-12   7.1e-10     333     495 ..     489     652 ..     486     654 .. 0.76

  Alignments for each domain:
  == domain 1    score: 26.4 bits;  conditional E-value: 1.2e-09
   TIGR03324 104 lGrvvdplGrpldgkkelasskrlpierpapeimdrapvtvplqtGlkvvdalipiGrGqrelilGdr 171
                 lG  vd  G    g+ +++ s+   +  ++ +   r p+ +pl+tG+  +dal piG Gq  l+lG  
  MMETSP1137-20121227|7501_1 152 LGNRVDLDGTQQAGGMNVEGSTAAEVFSETVPQAARRPINMPLHTGVVAIDALTPIGMGQSMLVLGPD 219
                 45555555555566667777777777788888899******************************964 PP

  == domain 2    score: 36.0 bits;  conditional E-value: 1.6e-12
   TIGR03324 333 nlisitdGqiylspelfelGvlpavdvGksvsrvGGkaql.......aayravaGdlklayaqfeeleafar.fgarldeetrkvierGrrirailkqtessplsvaeqivillalseelfda....veldklseaekaisaavtelpadlveklesakklsdedreaildiakk 495
                 +l+s+ dG i l  +l  +G +p vd  +s++r+G  + +        a r+v+ +l+l      el a a    +   e+tr++        a+l q + +plsv e++++l+a se+l+d      +  +l+e  + i++av+   adl+ k++ +  lsde+ ea+ +i++k
  MMETSP1137-20121227|7501_1 489 ELVSLVDGHIDLRENLAAQGRIPPVDPSNSLTRIGVGSHKlrpasstEAMRTVTRALRL------ELAAAADpVHCEAAEATRAA-----AHAAVLTQRDPAPLSVGEEVALLFAASEGLLDDaaasADATQLDELVRGICDAVAAADADLLPKITRSGYLSDEQAEALRSILTK 652
                 69*******************************99654430111111344555555554......44444331333444444444.....34689**************************96222257789************************************9998765 PP

>> TIGR02546  III_secr_ATP: type III secretion apparatus H+-transporting two-sector ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.4   0.0   6.1e-10   2.8e-07      81     169 ..     140     237 ..     126     301 .. 0.80
   2 !   15.7   0.0   2.2e-06   0.00099     310     344 ..     488     522 ..     479     547 .. 0.85

  Alignments for each domain:
  == domain 1    score: 27.4 bits;  conditional E-value: 6.1e-10
   TIGR02546  81 vgeelLGrvldglGrpldgkkelkakeik.....krpldaepPdplsRqkieqplalGvraiDglltvgeGqRiGifaeaG....vGkstLlsmiarg 169
                 +++e    v d+lG+ +d +++++a  ++     + ++++e+ ++  R++i+ pl +Gv aiD+l  +g+Gq + + +       +G+++Ll+ + ++
  MMETSP1137-20121227|7501_1 140 LSDEAWAGVFDALGNRVDLDGTQQAGGMNvegstAAEVFSETVPQAARRPINMPLHTGVVAIDALTPIGMGQSMLVLGPDAlpkpAGRTALLHRVLDA 237
                 577778889******998887777766555466678999**********************************9998754322227888888887765 PP

  == domain 2    score: 15.7 bits;  conditional E-value: 2.2e-06
   TIGR02546 310 devrsilDGhivLsrklaernhyPaiDvlaslsRv 344
                 +e+ s++DGhi L  +la++++ P++D  +sl R+
  MMETSP1137-20121227|7501_1 488 EELVSLVDGHIDLRENLAAQGRIPPVDPSNSLTRI 522
                 7899*****************************98 PP

>> TIGR03496  FliI_clade1: flagellar protein export ATPase FliI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.3   0.0   5.9e-09   2.7e-06      79     143 ..     152     216 ..     120     234 .. 0.86
   2 !   18.0   0.0   4.6e-07   0.00021     305     342 ..     490     527 ..     479     550 .. 0.79

  Alignments for each domain:
  == domain 1    score: 24.3 bits;  conditional E-value: 5.9e-09
   TIGR03496  79 lGrvidalgepldgkgaleaeeevsleaepinplkrerieevldvGvrainalltvgkGqrlglf 143
                 lG  +d  g+   g  ++e ++ +++ +e++   +r++i+ +l++Gv ai+al+++g Gq + ++
  MMETSP1137-20121227|7501_1 152 LGNRVDLDGTQQAGGMNVEGSTAAEVFSETVPQAARRPINMPLHTGVVAIDALTPIGMGQSMLVL 216
                 566666677777788888889999999*********************************99766 PP

  == domain 2    score: 18.0 bits;  conditional E-value: 4.6e-07
   TIGR03496 305 araiLDGHivLsRelaeaghyPaidieaSiSRvmkkvv 342
                   +++DGHi L  +la++g+ P++d ++S+ R+     
  MMETSP1137-20121227|7501_1 490 LVSLVDGHIDLRENLAAQGRIPPVDPSNSLTRIGVGSH 527
                 6689****************************865444 PP

>> TIGR03498  FliI_clade3: flagellar protein export ATPase FliI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.3   0.0   5.3e-09   2.4e-06      77     145 ..     142     215 ..     116     232 .. 0.83
   2 !   14.3   0.0   5.9e-06    0.0027     310     352 ..     492     534 ..     486     551 .. 0.78

  Alignments for each domain:
  == domain 1    score: 24.3 bits;  conditional E-value: 5.3e-09
   TIGR03498  77 eeswlGRvidalgepiDgkgal......aegeaavpvkaeppaalsRkrveeklktGvrvidlfltlcrGqRlGi 145
                 +e+w G v dalg+ +D  g+        eg++a  v +e+ + ++R+ ++ +l+tGv +id+++++++Gq + +
  MMETSP1137-20121227|7501_1 142 DEAWAG-VFDALGNRVDLDGTQqaggmnVEGSTAAEVFSETVPQAARRPINMPLHTGVVAIDALTPIGMGQSMLV 215
                 678888.99******997766533443467778888999999999**************************9855 PP

  == domain 2    score: 14.3 bits;  conditional E-value: 5.9e-06
   TIGR03498 310 gilDGhivldRaiaergryPainvlksvsRlakkvlspeekkl 352
                 +++DGhi l  ++a +gr P++++ +s+ R+  ++ +    + 
  MMETSP1137-20121227|7501_1 492 SLVDGHIDLRENLAAQGRIPPVDPSNSLTRIGVGSHKLRPASS 534
                 689***************************8666555444444 PP

>> TIGR01026  fliI_yscN: ATPase FliI/YscN family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.0     5e-07   0.00023      69     166 ..     106     213 ..      98     223 .. 0.78
   2 !   13.8   0.0   8.4e-06    0.0038     328     380 ..     489     544 ..     485     552 .. 0.81

  Alignments for each domain:
  == domain 1    score: 17.9 bits;  conditional E-value: 5e-07
   TIGR01026  69 gekvllmpyeevegveagskvlaknealsvk...vgegllGrvldalGkplDekgk......ald.nvekelitapinPlkrakieevlstGvrsidalltvgkGqrl 166
                 +  ++++++ + +++  g++v++ + +l++    ++++    v dalG+ +D +g+       ++  + +e++ + +    r +i+  l+tGv +idal ++g Gq +
  MMETSP1137-20121227|7501_1 106 RCGLFFAALLDGSAADDGEAVCLAGGNLTCAapaLSDEAWAGVFDALGNRVDLDGTqqaggmNVEgSTAAEVFSETVPQAARRPINMPLHTGVVAIDALTPIGMGQSM 213
                 556777888888889999999999988877655689999999*******9986654212211222123344999999999**************************87 PP

  == domain 2    score: 13.8 bits;  conditional E-value: 8.4e-06
   TIGR01026 328 evrailDGhivLsralaerglyPaidvlasisrl...lkaivseekkkavrkfrel 380
                 e+ +++DGhi L  +la +g  P++d  +s+ r+    +++ +++ ++a+r++ ++
  MMETSP1137-20121227|7501_1 489 ELVSLVDGHIDLRENLAAQGRIPPVDPSNSLTRIgvgSHKLRPASSTEAMRTVTRA 544
                 56799****************************84334677777777776666555 PP

>> TIGR03497  FliI_clade2: flagellar protein export ATPase FliI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.0   1.3e-05    0.0059      93     140 ..     166     213 ..     140     225 .. 0.71
   2 !   10.2   0.0   0.00012     0.056     305     335 ..     492     522 ..     484     546 .. 0.87

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 1.3e-05
   TIGR03497  93 kelvkkkeklpleaeppnplkrkrikdvlevgvkaidglltvGkGqrv 140
                   +v++ +  ++ +e +   +r++i+ +l++gv aid+l  +G Gq +
  MMETSP1137-20121227|7501_1 166 GMNVEGSTAAEVFSETVPQAARRPINMPLHTGVVAIDALTPIGMGQSM 213
                 33445555666666666777899***********************87 PP

  == domain 2    score: 10.2 bits;  conditional E-value: 0.00012
   TIGR03497 305 gilDGhivLsreLaeknhyPaidvlksvsrv 335
                 +++DGhi L  +La++++ P +d  +s++r+
  MMETSP1137-20121227|7501_1 492 SLVDGHIDLRENLAAQGRIPPVDPSNSLTRI 522
                 899*************************998 PP

>> TIGR01041  ATP_syn_B_arch: ATP synthase archaeal, B subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.1   0.0   0.00073      0.33      81     154 ..     150     223 ..     124     298 .. 0.90
   2 !    3.6   0.0    0.0085       3.9     320     353 ..     494     524 ..     486     541 .. 0.86

  Alignments for each domain:
  == domain 1    score: 7.1 bits;  conditional E-value: 0.00073
   TIGR01041  81 dllGrilngsGepidgGpeivpderrdinGaalnpaareypeefiqtGisaidGlntlvrGqklpifsgsGlph 154
                 d lG  ++  G    gG ++      ++  +++  aar+  +  + tG+ aid l  +  Gq + ++    lp+
  MMETSP1137-20121227|7501_1 150 DALGNRVDLDGTQQAGGMNVEGSTAAEVFSETVPQAARRPINMPLHTGVVAIDALTPIGMGQSMLVLGPDALPK 223
                 6678888888999999*****************99999999999********************9999999986 PP

  == domain 2    score: 3.6 bits;  conditional E-value: 0.0085
   TIGR01041 320 teGqivlsrelhrkGiyppinvlpslsrlmkdGi 353
                  +G i l  +l ++G  pp++   sl+r+   G+
  MMETSP1137-20121227|7501_1 494 VDGHIDLRENLAAQGRIPPVDPSNSLTRI---GV 524
                 6899**********************997...44 PP

>> TIGR00767  rho: transcription termination factor Rho
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.6   0.0   2.1e-05    0.0096     158     218 ..     200     267 ..     166     294 .. 0.78

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 2.1e-05
   TIGR00767 158 vldliaPiGkGqralivaP...Pk.aGktvllqeianaitrnnpevelivlli...derPeevtdmqr 218
                  +d ++PiG Gq  l++ P   Pk aG+t ll+ + +a+ +  p +   ++l    +  P  ++++qr
  MMETSP1137-20121227|7501_1 200 AIDALTPIGMGQSMLVLGPdalPKpAGRTALLHRVLDAVNTFSPSMRTALVLAapaEAMPHFIAEVQR 267
                 48999***********9885555569****************99998777764121345666666666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (658 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       237  (0.0577767); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                        21  (0.00511945); expected 4.1 (0.001)
Passed Fwd filter:                         9  (0.00219405); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.53u 0.17s 00:00:00.70 Elapsed: 00:00:00.77
# Mc/sec: 1127.91
//
Query:       MMETSP1137-20121227|7503_1  [L=174]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.3e-14   50.2   0.3    7.9e-14   49.6   0.2    1.3  1  TIGR01557 myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class


Domain annotation for each model (and alignments):
>> TIGR01557  myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.6   0.2   1.9e-17   7.9e-14       1      57 []      75     126 ..      75     126 .. 0.94

  Alignments for each domain:
  == domain 1    score: 49.6 bits;  conditional E-value: 1.9e-17
   TIGR01557   1 kkrvvWteelhrrFlqAvqklGgedkatPkkIlelmkveklTreqvkSHlQkyrlkk 57 
                 k+   Wt+e+hr F++Avq++G +d    k+I + +++++ T++qv+ H+Qk++l++
  MMETSP1137-20121227|7503_1  75 KQPRYWTPEEHRLFMEAVQRYGWKDV---KSI-AQHVGTR-TPTQVRTHAQKLFLRQ 126
                 67788*********************...***.8899999.9************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (174 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       143  (0.034861); expected 82.0 (0.02)
Passed bias filter:                      113  (0.0275475); expected 82.0 (0.02)
Passed Vit filter:                        19  (0.00463189); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.20u 0.17s 00:00:00.37 Elapsed: 00:00:00.35
# Mc/sec: 656.17
//
Query:       MMETSP1137-20121227|7504_1  [L=163]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (163 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       304  (0.0741102); expected 82.0 (0.02)
Passed bias filter:                      166  (0.0404681); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.16s 00:00:00.36 Elapsed: 00:00:00.39
# Mc/sec: 551.65
//
Query:       MMETSP1137-20121227|7505_1  [L=469]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.015   13.5   0.8      0.041   12.1   0.6    1.7  1  TIGR01352 tonB_Cterm: TonB family C-terminal domain


Domain annotation for each model (and alignments):
>> TIGR01352  tonB_Cterm: TonB family C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.6   9.9e-06     0.041      32      64 ..     106     142 ..     102     151 .. 0.80

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 9.9e-06
   TIGR01352  32 svlkSs..gdealDraAleavrkakfeppppkgg..a 64 
                 + l+Ss  g +alDr+A++ +++a+++  ++++   +
  MMETSP1137-20121227|7505_1 106 RTLQSSqqGRAALDRQAVQGIERAQKKVLQQQQRqxQ 142
                 66788889*******************9999544541 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (469 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       353  (0.0860556); expected 82.0 (0.02)
Passed bias filter:                      168  (0.0409556); expected 82.0 (0.02)
Passed Vit filter:                        28  (0.00682594); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.16s 00:00:00.59 Elapsed: 00:00:00.69
# Mc/sec: 897.14
//
Query:       MMETSP1137-20121227|7506_1  [L=406]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.3e-27   93.7   0.0    2.8e-17   60.7   0.0    2.1  2  TIGR00446 nop2p: NOL1/NOP2/sun family putative RNA methylase
      3e-22   77.1   0.0      2e-14   51.4   0.0    2.1  2  TIGR00563 rsmB: ribosomal RNA small subunit methyltransferase B


Domain annotation for each model (and alignments):
>> TIGR00446  nop2p: NOL1/NOP2/sun family putative RNA methylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.0   0.0   1.5e-11   3.1e-08      53      95 ..     103     145 ..      85     173 .. 0.82
   2 !   60.7   0.0   1.4e-20   2.8e-17     125     215 ..     205     295 ..     192     306 .. 0.85

  Alignments for each domain:
  == domain 1    score: 31.0 bits;  conditional E-value: 1.5e-11
   TIGR00446  53 yllqeassmlPvlalepeekervlDlaaaPGgkttqisallkn 95 
                  +l + +s+lP lal+p + e+vlD++aaPGgk   ++  l  
  MMETSP1137-20121227|7506_1 103 HYLLDGASILPALALDPLPGEQVLDMCAAPGGKSLILAGQLFR 145
                 5667899**************************9999876655 PP

  == domain 2    score: 60.7 bits;  conditional E-value: 1.4e-20
   TIGR00446 125 avinvDgRkfgavvlkfDriLlDaPCsgeGvirkdksrkknrseedikeisklqkeLllaaidalkk.gGvlvYstCsleveeneevvdyll 215
                  v  +++R+ ++  ++fD+iL+DaPCs e  i+       ++s   +k  +++q+ Ll +a+  lk+ gG lvYstCs++++en+ v+  ll
  MMETSP1137-20121227|7506_1 205 SVDATESRVSPTWPMHFDKILVDAPCSSERHIIHGAPG-ASWSASRLKRDAQVQQLLLRSAVRRLKPaGGKLVYSTCSIAPIENDGVIAKLL 295
                 4556678999999999**********998655554444.59*************************989******************98666 PP

>> TIGR00563  rsmB: ribosomal RNA small subunit methyltransferase B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.9   0.0   2.1e-09   4.3e-06     231     261 ..     107     137 ..      24     150 .. 0.86
   2 !   51.4   0.0   9.5e-18     2e-14     299     392 ..     202     296 ..     172     326 .. 0.85

  Alignments for each domain:
  == domain 1    score: 23.9 bits;  conditional E-value: 2.1e-09
   TIGR00563 231 DasaqlvatlLePkneetilDvCaaPGGktt 261
                 D ++ l a +L+P ++e++lD+CaaPGGk+ 
  MMETSP1137-20121227|7506_1 107 DGASILPALALDPLPGEQVLDMCAAPGGKSL 137
                 777888899********************85 PP

  == domain 2    score: 51.4 bits;  conditional E-value: 9.5e-18
   TIGR00563 299 kveekdadkageke..evekfDRiLlDaPCsal.GvirRkPDlkwlrkeadiaeLvelqkeiLkaiaplvkk.gGtLvYstCtllpeeneeqikaFla 392
                 +v ++da+++++++  +  +fD+iL+DaPCs+   +i+  P   w        + +++q+ +L+    ++k+ gG LvYstC++ p en+ +i + la
  MMETSP1137-20121227|7506_1 202 IVSSVDATESRVSPtwP-MHFDKILVDAPCSSErHIIHGAPGASWSAS--RLKRDAQVQQLLLRSAVRRLKPaGGKLVYSTCSIAPIENDGVIAKLLA 296
                 67778899998888433.59**********9852799********865..567889**************964789*****************98865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (406 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        65  (0.0158459); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.32u 0.15s 00:00:00.47 Elapsed: 00:00:00.44
# Mc/sec: 1217.90
//
Query:       MMETSP1137-20121227|7507_1  [L=90]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (90 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        66  (0.0160897); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.15s 00:00:00.28 Elapsed: 00:00:00.32
# Mc/sec: 371.22
//
Query:       MMETSP1137-20121227|7508_1  [L=85]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (85 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        27  (0.00658216); expected 82.0 (0.02)
Passed bias filter:                       22  (0.00536324); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.14s 00:00:00.28 Elapsed: 00:00:00.43
# Mc/sec: 260.91
//
Query:       MMETSP1137-20121227|7509_1  [L=219]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (219 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        54  (0.0131643); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.17s 00:00:00.36 Elapsed: 00:00:00.28
# Mc/sec: 996.75
//
Query:       MMETSP1137-20121227|7510_1  [L=162]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (162 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        52  (0.0126767); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.16s 00:00:00.31 Elapsed: 00:00:00.33
# Mc/sec: 647.95
//
Query:       MMETSP1137-20121227|7511_1  [L=428]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.033   10.7   0.1      0.054   10.0   0.1    1.2  1  TIGR03978 rSAM_paired_1: His-Xaa-Ser system radical SAM maturase HsxB


Domain annotation for each model (and alignments):
>> TIGR03978  rSAM_paired_1: His-Xaa-Ser system radical SAM maturase HsxB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.1   1.3e-05     0.054     250     291 ..      68     109 ..      65     129 .. 0.76

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 1.3e-05
   TIGR03978 250 peeivdeyvklGfksiFlRplspyGfAkkkekklgytleefl 291
                 +++i+ +y k+     F+R+l+ yGf k+++ + g +  ef+
  MMETSP1137-20121227|7511_1  68 ARDILPTYFKHNNIRSFIRQLNTYGFRKRTNIASGDEQLEFF 109
                 57999*******999***********9998766554443333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (428 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       183  (0.0446124); expected 82.0 (0.02)
Passed bias filter:                      140  (0.0341297); expected 82.0 (0.02)
Passed Vit filter:                        19  (0.00463189); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.16s 00:00:00.53 Elapsed: 00:00:00.44
# Mc/sec: 1283.89
//
Query:       MMETSP1137-20121227|7513_1  [L=288]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (288 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        79  (0.0192589); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.13s 00:00:00.35 Elapsed: 00:00:00.37
# Mc/sec: 1027.37
//
Query:       MMETSP1137-20121227|7514_1  [L=206]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (206 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        92  (0.0224281); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.17s 00:00:00.37 Elapsed: 00:00:00.31
# Mc/sec: 877.09
//
Query:       MMETSP1137-20121227|7515_1  [L=487]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (487 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       105  (0.0255973); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.13s 00:00:00.45 Elapsed: 00:00:00.45
# Mc/sec: 1428.42
//
Query:       MMETSP1137-20121227|7516_1  [L=49]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (49 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        18  (0.0043881); expected 82.0 (0.02)
Passed bias filter:                       17  (0.00414432); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.16s 00:00:00.26 Elapsed: 00:00:00.23
# Mc/sec: 281.19
//
Query:       MMETSP1137-20121227|7517_1  [L=45]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (45 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        16  (0.00390054); expected 82.0 (0.02)
Passed bias filter:                       16  (0.00390054); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.18s 00:00:00.28 Elapsed: 00:00:00.28
# Mc/sec: 204.81
//
Query:       MMETSP1137-20121227|7518_1  [L=664]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.089    9.3   0.0       0.13    8.8   0.0    1.1  1  TIGR02918 TIGR02918: accessory Sec system glycosylation protein GtfA


Domain annotation for each model (and alignments):
>> TIGR02918  TIGR02918: accessory Sec system glycosylation protein GtfA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   0.0   3.1e-05      0.13     335     416 ..     441     522 ..     438     552 .. 0.77

  Alignments for each domain:
  == domain 1    score: 8.8 bits;  conditional E-value: 3.1e-05
   TIGR02918 335 dwlvkavvkak.kslPeltfdiyGeGgekeklkklieenkaedyiklkGhkd.leevykdyelylsastseGfGltlleavGsG 416
                 d+l +   +a+ +  P +++d+yG G++   +++  ++  ae  ++++  +d  ++  ++y++++  s+se +  +  ea+  G
  MMETSP1137-20121227|7518_1 441 DYLKEQKAEADlSGRPRIQVDVYGGGEDLCDVQRAAQD--AELALEFHPAVDhASHALREYKVFINPSKSEVLSTATAEALAMG 522
                 666666666652348************99999886654..444444444333146789**************999999998877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (664 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       101  (0.0246221); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.12s 00:00:00.53 Elapsed: 00:00:00.64
# Mc/sec: 1369.39
//
Query:       MMETSP1137-20121227|7519_1  [L=1558]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   3.4e-288  957.2   9.9   8.4e-157  521.7   0.0    4.0  4  TIGR00957 MRP_assoc_pro: multi drug resistance-associated protein (MRP)
   1.5e-154  514.3   0.6    2.1e-78  261.9   0.0    3.1  3  TIGR01271 CFTR_protein: cystic fibrosis transmembrane conductor regulator (CFTR)
    9.8e-91  302.9   2.8    2.2e-63  212.5   0.0    3.7  3  TIGR03375 type_I_sec_LssB: type I secretion system ATPase
    9.3e-89  296.2   3.1    9.9e-68  226.8   0.0    3.8  3  TIGR02203 MsbA_lipidA: lipid A export permease/ATP-binding protein MsbA
    1.8e-88  295.5   8.3    3.7e-61  205.3   0.0    4.0  4  TIGR02204 MsbA_rel: ABC transporter, permease/ATP-binding protein
    2.6e-84  281.9   5.2    2.9e-51  172.8   0.0    3.3  3  TIGR02857 CydD: thiol reductant ABC exporter, CydD subunit
    8.2e-84  280.0   3.7    7.6e-58  194.2   0.0    4.2  3  TIGR00958 3a01208: antigen peptide transporter 2
    4.7e-80  267.6   5.2      1e-56  190.4   0.0    3.7  3  TIGR01846 type_I_sec_HlyB: type I secretion system ATPase
    2.3e-79  265.2   4.9    1.6e-46  156.9   0.1    3.3  3  TIGR02868 CydC: thiol reductant ABC exporter, CydC subunit
    1.9e-72  242.4   0.2    5.6e-55  184.6   0.0    2.6  2  TIGR03796 NHLM_micro_ABC1: NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein
    1.2e-69  233.4   0.0    2.4e-50  169.6   0.0    3.0  2  TIGR01193 bacteriocin_ABC: ABC-type bacteriocin transporter
    1.6e-69  232.9   8.5    7.2e-54  181.2   0.0    3.7  3  TIGR03797 NHLM_micro_ABC2: NHLM bacteriocin system ABC transporter, ATP-binding protein
      4e-57  191.8   0.3    3.3e-34  116.1   0.0    3.6  4  TIGR01842 type_I_sec_PrtD: type I secretion system ATPase
    8.5e-52  174.4   0.0      1e-35  121.3   0.0    2.8  2  TIGR01192 chvA: glucan exporter ATP-binding protein
    7.7e-39  131.4   0.2    5.3e-25   86.1   0.0    3.3  3  TIGR03864 PQQ_ABC_ATP: ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system
    2.5e-38  129.7   0.0    1.4e-18   65.0   0.0    3.2  3  TIGR00972 3a0107s01c2: phosphate ABC transporter, ATP-binding protein
    3.6e-38  129.5   6.0    2.3e-22   77.5   0.1    3.8  2  TIGR03265 PhnT2: putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein
    3.3e-37  126.0   0.1    2.9e-20   70.6   0.0    4.2  3  TIGR02315 ABC_phnC: phosphonate ABC transporter, ATP-binding protein
    2.2e-35  120.1   0.1    8.7e-16   56.0   0.0    3.3  2  TIGR02982 heterocyst_DevA: ABC exporter ATP-binding subunit, DevA family
    4.2e-35  119.2   5.2    1.4e-17   61.6   0.2    3.7  2  TIGR03258 PhnT: 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT
    5.2e-35  118.9   0.9    2.2e-17   61.2   0.0    3.6  2  TIGR00968 3a0106s01: sulfate ABC transporter, ATP-binding protein
    6.9e-34  115.1   0.0    1.7e-19   68.0   0.0    3.3  3  TIGR03410 urea_trans_UrtE: urea ABC transporter, ATP-binding protein UrtE
    1.6e-32  111.0   0.1    8.3e-18   62.6   0.0    3.4  3  TIGR02142 modC_ABC: molybdate ABC transporter, ATP-binding protein
    6.2e-32  108.4   0.7    3.3e-14   50.6   0.1    4.1  2  TIGR01166 cbiO: cobalt ABC transporter, ATP-binding protein
    1.5e-31  107.5   0.0    2.4e-17   61.2   0.0    3.8  3  TIGR02673 FtsE: cell division ATP-binding protein FtsE
    1.8e-31  107.4   0.1    1.1e-17   62.1   0.2    3.6  3  TIGR01186 proV: glycine betaine/L-proline transport ATP binding subunit
    2.1e-31  106.9   0.2    5.8e-11   39.9   0.0    4.3  4  TIGR03005 ectoine_ehuA: ectoine/hydroxyectoine ABC transporter, ATP-binding protein EhuA
    3.1e-31  106.5   0.2    1.5e-14   51.9   0.0    3.5  3  TIGR01277 thiQ: thiamine ABC transporter, ATP-binding protein
      2e-30  103.7   9.8    7.7e-12   42.8   2.1    4.5  3  TIGR03873 F420-0_ABC_ATP: proposed F420-0 ABC transporter, ATP-binding protein
    2.1e-30  103.9   2.1    4.3e-16   57.0   0.4    4.0  3  TIGR02769 nickel_nikE: nickel import ATP-binding protein NikE
    3.4e-30  102.9   0.0    6.8e-15   52.9   0.0    3.5  3  TIGR03608 L_ocin_972_ABC: putative bacteriocin export ABC transporter, lactococcin 972 group
    1.2e-29  101.2   3.9    1.2e-14   51.9   0.0    4.1  3  TIGR01187 potA: polyamine ABC transporter, ATP-binding protein
    3.2e-29   99.8   3.6    3.1e-14   50.6   0.6    3.9  3  TIGR02314 ABC_MetN: D-methionine ABC transporter, ATP-binding protein
    4.6e-29   99.6  10.0    2.1e-15   54.9   0.0    3.6  3  TIGR03771 anch_rpt_ABC: anchored repeat-type ABC transporter, ATP-binding subunit
    2.6e-28   97.0   1.5    2.3e-15   54.5   0.2    3.8  3  TIGR01188 drrA: daunorubicin resistance ABC transporter, ATP-binding protein
    5.1e-28   96.1   0.1    1.5e-15   55.3   0.1    4.0  3  TIGR00960 3a0501s02: type II secretory pathway family protein
    8.4e-28   95.3   3.0    2.1e-13   48.2   0.3    3.7  2  TIGR01184 ntrCD: nitrate ABC transporter, ATP-binding proteins C and D
    2.9e-27   93.5   0.0      7e-14   49.8   0.0    3.0  2  TIGR01189 ccmA: heme ABC exporter, ATP-binding protein CcmA
    3.5e-27   93.2   0.4    7.1e-15   53.0   0.3    4.3  3  TIGR02211 LolD_lipo_ex: lipoprotein releasing system, ATP-binding protein
      1e-23   81.5   1.8    9.2e-06   22.3   0.0    4.1  4  TIGR03719 ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family
    1.4e-22   77.8   0.0    6.8e-14   49.0   0.0    2.4  2  TIGR00954 3a01203: peroxysomal long chain fatty acyl transporter
    8.4e-22   75.2   0.1    7.9e-12   42.3   0.1    2.9  2  TIGR01194 cyc_pep_trnsptr: cyclic peptide transporter
    8.7e-22   75.4   0.5    6.8e-10   36.5   0.6    4.2  3  TIGR02770 nickel_nikD: nickel import ATP-binding protein NikD
    1.5e-19   68.0   5.3    1.1e-12   45.4   0.1    3.1  2  TIGR01288 nodI: nodulation ABC transporter NodI
    1.6e-19   68.1   0.0      5e-09   33.8   0.0    3.8  3  TIGR01978 sufC: FeS assembly ATPase SufC
    3.1e-19   67.2   0.0    9.9e-05   19.7   0.0    4.3  4  TIGR02324 CP_lyasePhnL: phosphonate C-P lyase system protein PhnL
    5.6e-19   65.9   0.9    3.4e-07   27.0   0.2    4.1  4  TIGR03269 met_CoM_red_A2: methyl coenzyme M reductase system, component A2
    6.9e-19   66.2   0.0      2e-12   45.0   0.0    3.2  3  TIGR03522 GldA_ABC_ATP: gliding motility-associated ABC transporter ATP-binding subunit GldA
    6.7e-18   62.6   2.9      7e-08   29.6   0.0    4.1  4  TIGR03415 ABC_choXWV_ATP: choline ABC transporter, ATP-binding protein
    1.1e-17   62.3   0.2    2.9e-11   41.3   0.0    3.4  2  TIGR03740 galliderm_ABC: lantibiotic protection ABC transporter, ATP-binding subunit
    2.2e-17   61.4   0.0    2.3e-10   38.4   0.0    3.7  3  TIGR03411 urea_trans_UrtD: urea ABC transporter, ATP-binding protein UrtD
    1.7e-16   56.2   0.1    5.9e-13   44.4   0.0    2.1  2  TIGR01257 rim_protein: rim ABC transporter
    2.1e-16   57.3   2.3    2.1e-10   37.5   0.2    3.9  3  TIGR02633 xylG: D-xylose ABC transporter, ATP-binding protein
    1.3e-12   45.5   7.4    7.2e-08   30.0   1.3    4.3  2  TIGR02323 CP_lyasePhnK: phosphonate C-P lyase system protein PhnK
    1.1e-11   41.9   0.1     0.0031   14.0   0.0    4.2  4  TIGR00955 3a01204: pigment precursor permease
    8.1e-06   22.1   0.7       0.05    9.6   0.0    3.1  3  TIGR00630 uvra: excinuclease ABC subunit A
    9.8e-05   20.0   0.7      0.058   11.0   0.0    2.4  2  TIGR00231 small_GTP: small GTP-binding protein domain
     0.0011   16.7   0.1      0.044   11.4   0.0    2.3  2  TIGR00101 ureG: urease accessory protein UreG
     0.0026   14.8   0.0       0.11    9.5   0.0    2.3  2  TIGR03819 heli_sec_ATPase: helicase/secretion neighborhood ATPase
     0.0096   12.5   0.2       0.41    7.1   0.1    2.3  2  TIGR02546 III_secr_ATP: type III secretion apparatus H+-transporting two-sector ATPase
  ------ inclusion threshold ------
      0.012   11.0   0.6        2.9    3.1   0.0    3.2  4  TIGR00956 3a01205: pleiotropic drug resistance family protein
      0.013   12.5   0.1       0.21    8.6   0.0    2.2  2  TIGR01420 pilT_fam: twitching motility protein
      0.015   12.3   0.3       0.82    6.5   0.1    2.2  2  TIGR00750 lao: LAO/AO transport system ATPase
      0.037   11.7   1.2        3.9    5.1   0.2    2.4  2  TIGR00152 TIGR00152: dephospho-CoA kinase
      0.055   10.6   0.0       0.14    9.3   0.0    1.5  1  TIGR02012 tigrfam_recA: protein RecA
       0.33    7.2   0.4       0.52    6.5   0.3    1.1  1  TIGR00602 rad24: checkpoint protein rad24
       0.54    5.9   0.9        1.7    4.3   0.1    1.8  2  TIGR00618 sbcc: exonuclease SbcC


Domain annotation for each model (and alignments):
>> TIGR00957  MRP_assoc_pro: multi drug resistance-associated protein (MRP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.5   0.0   3.7e-09   2.3e-07     108     263 ..     123     290 ..     101     294 .. 0.68
   2 !  205.5   5.0   3.5e-63   2.1e-61     305     618 ..     291     603 ..     287     653 .. 0.95
   3 !  201.8   0.0   4.7e-62   2.9e-60     649     848 ..     704     904 ..     686     918 .. 0.93
   4 !  521.7   0.0  1.4e-158  8.4e-157     931    1507 ..     956    1542 ..     913    1549 .. 0.93

  Alignments for each domain:
  == domain 1    score: 26.5 bits;  conditional E-value: 3.7e-09
   TIGR00957 108 gitmll.atlliqlerrkgvqssgillifwlvalvcalailrskillalk..edakvdlfrdttfyvyfalvlvqlvl......scfsdksplfsekvvdpnpc...pessasflsrltfwwitklivrgyrqpleesdlwslkkedtseevvpvlvenwkkeekktr 263
                  i m + +t l+  e ++ ++s   l ++w++ l  a a + + ++      +d+ +   r ++f   + l +++l          ++ ++ l++    +++p+    e++as+ s+ltf wi++l+  g ++ le+sdl+ l+  d +e+   +l e+w++e +  r
  MMETSP1137-20121227|7519_1 123 AIMMWVgSTGLVVAEYKENLNSGFSLRLWWILNLCVAGATFAADLVKVVDdhDDHLATYVRLVSFGPSLILGISALFEpdtpsdRAYAGQPLLLAVDGEQQEPMvraTEATASIASKLTFTWISGLLAVGSKRSLEHSDLFELQVVDGTEHNSGILSEAWQREVASGR 290
                 444433156677777777777666666777777777889999988766531133344455666666555555566653211111233444445565666667753337999***************************************************998766 PP

  == domain 2    score: 205.5 bits;  conditional E-value: 3.5e-63
   TIGR00957 305 psllkvlyktfgsyfllsflfkaiqdllsfagpkllellikfvndrkapdwqgylytal.lfvsallqtlvlqqyfhiifvsgvriktavvgavyrkalvitnsarksstvgeivnlmsvdaqrfmdlatylnllwsaplqvilalyllwlnlgpsvlagvavmvllvplnavvavktktyqvaqmkskdnriklmneilngikvlklyawelafkdkvlairqeelkvlkksaylaavgtftwvctpflvalitlavyvtvdennildakkafvslalfnilrlplnilpmvisslvqasvslkrlriflsqee 618
                  s++++++++fg+yf  + l k+i+d   fa+p +++ ++ +++ + a +    l++al +f s +  +l++ qyf   +   +r+k av  +vy+kal +    r+    g iv  m +da ++ d  +yl +l s plq+++a+ +l+  lg s +ag+ vm++++pln ++  kt    +a m  +d+r+k+ ne+l+g+++lkl++we  +++++l+ r+ elk ++     +    f +  tp lv+ +t+++y ++   n l a kaf sl+lfn+lr+p+ ++pm+i+ +++ +v  +rl +fls  e
  MMETSP1137-20121227|7519_1 291 NSFINAFHRAFGAYFWKTGLLKLINDACNFANPLFINTIVSYIDGKLALSPAVALLCALgMFASNTCLSLAMGQYFWRGYRQSLRVKVAVGQVVYQKALALDHKERQNFGTGSIVSYMQIDAAKLGDSIPYLHVLSSGPLQLVIAITMLYNLLGVSGFAGLGVMIIMLPLNIIIGRKTGKLTMATMAKRDKRVKFTNEVLQGMRILKLFSWEDPMLQELLNKREIELKQIRGNMLWSGLIMFLFTATPVLVTCSTFVLYTVLG--NELTAAKAFTSLTLFNLLRFPIIVIPMMITRVIDLAVVHRRLSKFLSAPE 603
                 6999*******************************************99987666666559***999***********************************************************************************************************************************************************************************************98875..6699*******************************************876 PP

  == domain 3    score: 201.8 bits;  conditional E-value: 4.7e-62
   TIGR00957 649 depptlngltlsipegalvavvgqvgcgkssllsallaemdkvegkvalkgsvayvpqqawiqndslrenilfgkaleekyykavleacalladleilpsgdrteigekgvnlsggqkqrvslaravysdadiyllddplsavdahvakhifekvigpkgllk..nktrilvthgisylpqvdviivls.dgkisemgsyqel 848
                 + p tl+ +tl++p+ga++ v g+vgcgk++lls++l+++ +v g+  ++g +a+  q+ wiqn slr+n+lfg++++e  y  v+ acal  dl  l  gd teige+g+nlsggqk rv+lara y+ ad ylldd lsavda v++h++ k i   gll+  + t i+vth   +l   d  + +s  g i + g+  +l
  MMETSP1137-20121227|7519_1 704 SMPSTLKDITLNVPRGAIIGVCGPVGCGKTTLLSSILGDVPRVAGRAVVRGEIAFCAQEPWIQNISLRDNVLFGRPMDEALYARVISACALEXDLLALADGDATEIGERGLNLSGGQKARVALARACYARADTYLLDDVLSAVDAEVGQHLMTKCIA--GLLRewGATVIFVTHHTHWLHMCDQGVFMSaHGTIEKQGPPSSL 904
                 679********************************************************************************************************************************************************97..666622789***************98888636999998887665 PP

  == domain 4    score: 521.7 bits;  conditional E-value: 1.4e-158
   TIGR00957  931 eak.eetwklmeadkaqigqvklsvywdyakaiglfitllsillflcnsvsalasnywlslwtddavvdgtqentklrlsvyaalgilqgiavlgysmavsiggilasrvlhldllhnvlrspmsffertpsgnlvnrfskeldvvdsvlaevikmllgslfnvigavivillatplaaviilplallyflvqrfyvassrqlkrlesvsrspvyshfnetllgvsvirafeeqerfiiqsdlkvdenqkayypsivanrwlavrlelvgncivlfaalfavisr.........sslsaglvglsvsyslqvtaylnwlvrmsseletnivaverlkeys..etekeapwqieetappsswpksgrvefrnyslryredldlvlrdlnvtieggekvgivgrtgagkssltlglfrinesaegeiiidglniakiglhdlrfkltiipqdpvlfsgslrmnldpfsqysdeevwlalelahlkdfvsalpdkldfecaeggenlsvgqrqlvclarallrktkilvldeataavdletdnliqstirtqfedctvltiahrlntimdytrvlvldkgevaefdapsell 1507
                  + k +e +kl++a+  + g+vk +v+  y +a+g f  ++++ ++   ++  ++s +wl  w+ d+  + +  +  + + vya + ++   +++   + +    + a+r++h d l++v+ +pm+ff++ p g+++nrfs + + vd  l++    l+   fn ig+++++   +p +a+ ++pl+++y+ v  +y  ssr+++rl+s+s+sp+y+ f+e++ g+  i+af  +erf      k d nq+a + s  anrwl+vrle++ n ++ ++al++v++          s  +a + gl++sy+  ++  lnwl+r  + let +v++erl +ys  ++e+  p  +  t   + wp++g+++f   ++ yr++l  vl d+ + +   ek+givgrtgagkss+ ++lfr+ e   g i idg +ia++ l++lr++l+iipqdpvlf+g+lr nldpf+++ de++w +l  + +++ +   pd+ld    e g nls+gqrqlvc++rall+++++lvldeata+vd++td liq t+ t++ + tvltiahrl+tim   rv+v+ +g vae + p  l 
  MMETSP1137-20121227|7519_1  956 QGKpKERGKLTQAEERERGTVKAAVWLSYFRALGXFALVMMLSVYALSQTLIMGSSWWLGRWAADSYPNISHGEPWFYMFVYAGISMIASGMIFVRLLVMVFASLRAARIIHDDALKAVIAAPMAFFDTNPLGRILNRFSVDQQKVDVQLSPTASQLIMYTFNLIGTLVILTGNSPWIAISLIPLSIVYVRVAAYYRESSREMQRLDSISKSPIYTAFTEAVNGTPTIQAFRATERFYDENARKFDYNQRAGFVSYGANRWLTVRLEFLSNILLALTALLSVLTHllakgsddgSHAAAAMAGLALSYAPGLSETLNWLLRQFTTLETMMVSIERLAQYSgiKAEETQPHAVTST--ADEWPTRGQIKFTAVTMCYRPGLPNVLDDMYLDVAPCEKIGIVGRTGAGKSSVLVCLFRLVELKSGTIEIDGRDIARMPLKELRSRLSIIPQDPVLFTGTLRYNLDPFNEFDDEHLWRTLGQCSIEAPMRQHPDGLDRPIEERGANLSMGQRQLVCMCRALLKNSRVLVLDEATASVDMDTDALIQRTLETELTQATVLTIAHRLDTIMGNDRVVVMANGRVAETGPPLVLR 1542
                  3444699*******************************99999*******************************************999999********************************************************************************************************************************************************************************************998642222222223356789***************************************434455566666555..689******************************************************************************************************************************************************************************************************************************9997665 PP

>> TIGR01271  CFTR_protein: cystic fibrosis transmembrane conductor regulator (CFTR)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  116.5   1.2   2.7e-36   1.6e-34       5     386 ..     230     609 ..     226     624 .. 0.90
   2 !  130.8   0.0   1.2e-40   7.5e-39     440     618 ..     707     887 ..     680     920 .. 0.92
   3 !  261.9   0.0   3.5e-80   2.1e-78     921    1428 ..    1027    1531 ..    1017    1544 .. 0.92

  Alignments for each domain:
  == domain 1    score: 116.5 bits;  conditional E-value: 2.7e-36
   TIGR01271   5 pvekanvlsklffswtrpilrkgyrkklelsdiykipsvdsadnlseklerewdrelasakkkpkllnalrrcflwrflfygillylgevtkavqplllgriiasydaknaeereiayylalglsllfivrtlllhpaifglhhlgmqlrialfsliykktlklssrvldkistgqlvsllsnnlnkldeglalahfvwiaplqvvllvgliwelleasafcglgflillalvqallgkkmmkyrdkragkiserlaitseiieniqsvkaycweeamekiienirqvelkltrkvayvryfsssafffsg..llvvvlsvvpya.likgiilrrifttisycivlrmtvtrqlpsaiqtwydslgairkiedflqkeeykvley 386
                     a++ skl f+w + +l  g ++ le sd++++  vd +++ s  l   w+re+as   +  ++na++r f   f   g+l  + +++   +pl +  i++  d k a    +a+  alg+        l +    +      +++++a+  ++y+k l l  +  +   tg +vs +  +  kl +++   h +   plq+v+ + ++++ll +s+f glg++i++  ++ ++g+k +k       k ++r+ +t e+++ ++ +k ++we+ m + + n r+ elk  r      +     f+f++  +lv  ++ v y+ l + +   + ft+++   +lr+ +   +p+ i    d   + r++ +fl   e  v++ 
  MMETSP1137-20121227|7519_1 230 TEATASIASKLTFTWISGLLAVGSKRSLEHSDLFELQVVDGTEHNSGILSEAWQREVASG--RNSFINAFHRAFGAYFWKTGLLKLINDACNFANPLFINTIVSYIDGKLALSPAVALLCALGMFASNTCLSLAMGQYFWRGYRQSLRVKVAVGQVVYQKALALDHKERQNFGTGSIVSYMQIDAAKLGDSIPYLHVLSSGPLQLVIAITMLYNLLGVSGFAGLGVMIIMLPLNIIIGRKTGKLTMATMAKRDKRVKFTNEVLQGMRILKLFSWEDPMLQELLNKREIELKQIRGNML--WSGLIMFLFTAtpVLVTCSTFVLYTvLGNELTAAKAFTSLTLFNLLRFPII-VIPMMITRVIDLAVVHRRLSKFLSAPERPVVDL 609
                 556799*****************************************************4..5679*********99*9********************************************99888888888888888888899**********************************************************************************99999*********************************************99999999999998886554..4455556665522677777877776256889999*****999999999886.589999988887777788999998888877765 PP

  == domain 2    score: 130.8 bits;  conditional E-value: 1.2e-40
   TIGR01271 440 pvlknislklekgqllavagstgsgkssllmmilgelepsegkikhsgrisfspqvswimpgtikdniifglsydeyrytsvikacqleediallaekdktvlgeggitlsggqrarislaravykdadlylldspfsyldvvtekeifesclckllan..ktrilvtsklehlkkadkil 618
                   lk+i+l++ +g ++ v+g  g+gk++ll  ilg++    g+    g i+f++q +wi   +++dn++fg   de  y  vi ac le d+  la+ d t +ge g+ lsggq+ar++lara y  ad ylld  +s +d    ++++ +c+  ll +   t i+vt +   l+ +d+ +
  MMETSP1137-20121227|7519_1 707 STLKDITLNVPRGAIIGVCGPVGCGKTTLLSSILGDVPRVAGRAVVRGEIAFCAQEPWIQNISLRDNVLFGRPMDEALYARVISACALEXDLLALADGDATEIGERGLNLSGGQKARVALARACYARADTYLLDDVLSAVDAEVGQHLMTKCIAGLLREwgATVIFVTHHTHWLHMCDQGV 887
                 479**********************************************************************************************************************************************************863369999999999999888744 PP

  == domain 3    score: 261.9 bits;  conditional E-value: 3.5e-80
   TIGR01271  921 stsayyilyiyvgvadsllalgflrglplvhtlltvskrlhkkmlhsvlqapmavlntlkagrilnrfskdiaiiddllpltlfdliqlllivlgaiavvsvlqpyilvaaipvavifivlrayflrtsqqlkqlesearspifshliislkglwtvrafgrqsyfetlfhkalnlhtanwflylstlrwfqlridiifvlffiavvfiaiatn....degege......vgiiltlamnilstlqwavnssidvdglmrsvsrvfkfidlpqeeskpkkstkkyqlskvlvienkhvkkiwpsggqmtvkdltakyteagravlqdlsfsveagqrvgllgrtgsgkstllsallrllst.egeiqidgvswnsvtlqkwrkafgvipqkvfilsgtfrknldpyeqysdeeiwkvaeevglksvieqfpdkldfvlvdggyvlsnghkqlmclarsilskakillldepsafldpvtlqiirktlkqafsnctvilsehrveallecqqflviegss 1428
                   +  ++ +++y g++     + f+r l +v + l  ++++h++ l++v+ apma ++t   grilnrfs d   +d  l  t  +li  ++ ++g++++++   p+i ++ ip+ ++++ + ay+ ++s+++++l+s ++spi++ +  +++g  t++af     f     + ++      f    + rw+ +r++++  +++  +++++++t+    ++++g        g+ l+ a  +  tl+w +    +++++m s++r+ ++  + +ee++p+  t++               ++wp+ gq++   +t+ y  +   vl+d+ + v + +++g++grtg+gks++l +l+rl++   g i+idg     + l++ r  + +ipq   +++gt+r nldp++++ de +w+   +  + + + q pd ld  +++ g  ls g +ql+c++r++l  +++l+lde +a +d  t  +i++tl   +++ tv+   hr+++++  ++ +v+ + +
  MMETSP1137-20121227|7519_1 1027 HGEPWFYMFVYAGISMIASGMIFVRLLVMVFASLRAARIIHDDALKAVIAAPMAFFDTNPLGRILNRFSVDQQKVDVQLSPTASQLIMYTFNLIGTLVILTGNSPWIAISLIPLSIVYVRVAAYYRESSREMQRLDSISKSPIYTAFTEAVNGTPTIQAFRATERFYDENARKFDYNQRAGFVSYGANRWLTVRLEFLSNILLALTALLSVLTHllakGSDDGShaaaamAGLALSYAPGLSETLNWLLRQFTTLETMMVSIERLAQYSGIKAEETQPHAVTST--------------ADEWPTRGQIKFTAVTMCYRPGLPNVLDDMYLDVAPCEKIGIVGRTGAGKSSVLVCLFRLVELkSGTIEIDGRDIARMPLKELRSRLSIIPQDPVLFTGTLRYNLDPFNEFDDEHLWRTLGQCSIEAPMRQHPDGLDRPIEERGANLSMGQRQLVCMCRALLKNSRVLVLDEATASVDMDTDALIQRTLETELTQATVLTIAHRLDTIMGNDRVVVMANGR 1531
                  455567778899998888888899****************************************************************************************************************************************9887776666666676666677777889***********99999999999999733332222222222225777888888999*******************************9998877665..............689*********************************************************985279**********************************************************************************************************************************************9999888877665 PP

>> TIGR03375  type_I_sec_LssB: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   1.2      0.56        34     222     352 ..     378     509 ..     371     605 .. 0.67
   2 !   86.2   0.0   5.6e-27   3.4e-25     480     685 ..     706     901 ..     696     905 .. 0.92
   3 !  212.5   0.0   3.5e-65   2.2e-63     263     685 ..    1106    1538 ..    1038    1547 .. 0.77

  Alignments for each domain:
  == domain 1    score: 0.3 bits;  conditional E-value: 0.56
   TIGR03375 222 lilsaklfervlglrlearpa.svGsfasqlr.efesvrdfltsatltalvDLpfvllfllvialiggplvlvplvavplvllvglllqkplsklaeeslresaqknallveslegletikalnaesrlqkkW 352
                 + + + +++++l+l+ ++r++  +Gs++s ++ +  ++ d +    +++   L + ++ +++++ + g   +  l +++++l +++++ ++  kl+ +++++  ++  +  e l+g+  +k+ + e  + ++ 
  MMETSP1137-20121227|7519_1 378 VAVGQVVYQKALALDHKERQNfGTGSIVSYMQiDAAKLGDSIPYLHVLSSGPLQL-VIAITMLYNLLGVSGFAGLGVMIIMLPLNIIIGRKTGKLTMATMAKRDKRVKFTNEVLQGMRILKLFSWEDPMLQEL 509
                 5555666666666666555542456666666544555555555555555555544.45566666666777777888899999999***********************************9998887665543 PP

  == domain 2    score: 86.2 bits;  conditional E-value: 5.6e-27
   TIGR03375 480 kaaLknvslkikpGekvaiiGriGsGKstllklllglyepteGsvlldgvdirqidpadlrrnigyvpqdvtLfyGtlrdNialgapaaedeellraaelaGvtefvkkhpkGldlqigerGesLSgGQrqavalaRallkdppillLDEPtsalDnsseekller.Lkella..dkTlvlvtHrtslLelvdriivld.kGrivadGpk 685
                  ++Lk+++l++  G  +++ G +G+GK+tll  +lg +   +G+             a +r +i++ +q++++ + +lrdN+ +g+p ++++   r++++  ++  +   ++G  + igerG +LSgGQ+  valaRa +   + +lLD+  sa+D++  ++l+++ ++ ll+  + T++ vtH+t+ L+++d+ + ++ +G+i  +Gp 
  MMETSP1137-20121227|7519_1 706 PSTLKDITLNVPRGAIIGVCGPVGCGKTTLLSSILGDVPRVAGR-------------AVVRGEIAFCAQEPWIQNISLRDNVLFGRP-MDEALYARVISACALEXDLLALADGDATEIGERGLNLSGGQKARVALARACYARADTYLLDDVLSAVDAEVGQHLMTKcIAGLLRewGATVIFVTHHTHWLHMCDQGVFMSaHGTIEKQGPP 901
                 578*********************************99999997.............67899*************************.78888899999999**999****************************************************999887625666667899*****************9888637999999996 PP

  == domain 3    score: 212.5 bits;  conditional E-value: 3.5e-65
   TIGR03375  263 satltalvDLpfvllfllvialiggplvlvplvavplvllvglllqkplsklaeeslresaq.knallveslegletikalnaesrlqkkWeqvvaalakvslklrllsalltnlaalvqqlvsvavvvvGvyliaegeltmGgLiAaviLsgRala..P.l.aqlaglltryqqaktalesldelmklp...ver...eeekrllsreklkGeielknvsfkYpeeekaaLknvslkikpGekvaiiGriGsGKstllklllglyepteGsvlldgvdirqidpadlrrnigyvpqdvtLfyGtlrdNialgapaaedeellraaelaGvtefvkkhpkGldlqigerGesLSgGQrqavalaRallkdppillLDEPtsalDnsseekllerLkelladkTlvlvtHrtslLelvdriivldkGrivadGpk 685 
                  s t ++l+   f l+  lvi    +p +++ l+ + +v +   +  ++ s+ +++  + s++       e+++g  ti+a +a++r+  +  +     ++++  +   +  lt   +++  +   +  ++ v + +  + +  g  Aa  ++g al+  P l   l+ ll ++++ +t + s+++l +     +e+   +  ++++++   +G+i++  v++ Y+    ++L+++ l+++p ek++i+Gr+G+GKs++l  l +l+e ++G++ +dg di ++  ++lr++++++pqd++Lf+Gtlr N+   ++ ++de+l r++ +  +++ +++hp+Gld++i+erG++LS GQrq+v + Rallk+ ++l+LDE t+++D+ +++ + ++L++ l++ T++ ++Hr   +   dr++v+ +Gr+   Gp 
  MMETSP1137-20121227|7519_1 1106 SPTASQLIMYTFNLIGTLVILTGNSPWIAISLIPLSIVYVRVAAYYRESSREMQRLDSISKSpIYTAFTEAVNGTPTIQAFRATERFYDENARKFDYNQRAGFVSYGANRWLTVRLEFLSNILLALTALLSVLTHLLAKGSDDGSHAAAAMAGLALSyaPgLsETLNWLLRQFTTLETMMVSIERLAQYSgikAEEtqpHAVTSTADEWPTRGQIKFTAVTMCYRPGLPNVLDDMYLDVAPCEKIGIVGRTGAGKSSVLVCLFRLVELKSGTIEIDGRDIARMPLKELRSRLSIIPQDPVLFTGTLRYNLDPFNE-FDDEHLWRTLGQCSIEAPMRQHPDGLDRPIEERGANLSMGQRQLVCMCRALLKNSRVLVLDEATASVDMDTDALIQRTLETELTQATVLTIAHRLDTIMGNDRVVVMANGRVAETGPP 1538
                  66777777777777666666555455444444444444443333334444444443333333134567899999999999999988888777777777777766666666666666665555555555554444333333333455555556666641132313567788899999999999999987541113320002334455566799***************************************************************************************************9987.9****************************************************************************************************************99995 PP

>> TIGR02203  MsbA_lipidA: lipid A export permease/ATP-binding protein MsbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.5     0.024       1.5      86     215 ..     376     504 ..     343     626 .. 0.74
   2 !   61.1   0.0   2.5e-19   1.5e-17     347     552 ..     707     901 ..     695     910 .. 0.86
   3 !  226.8   0.0   1.6e-69   9.9e-68      73     560 ..    1049    1546 ..    1031    1552 .. 0.79

  Alignments for each domain:
  == domain 1    score: 5.0 bits;  conditional E-value: 0.024
   TIGR02203  86 vvrdlRkklfeklltlpsayfdkessgsllsrltfdseqvvsaatdvlkvlvretltvigllivlly...lsWqltl.ivvvllPvlallvrvvskrlrkiskeiqnsigeltkvveealqgyrvvklfggqea 215
                 v   + + +++k l l ++  ++  +gs++s + +d+ +  + ++  l vl    l+++ ++ +l+    +s    l +++++lP+  ++ r +     k++  +     +  k  +e lqg r +klf  ++ 
  MMETSP1137-20121227|7519_1 376 VKVAVGQVVYQKALALDHKERQNFGTGSIVSYMQIDAAKL-GDSIPYLHVLSSGPLQLVIAITMLYNllgVSGFAGLgVMIIMLPLNIIIGRKT----GKLTMATMAKRDKRVKFTNEVLQGMRILKLFSWEDP 504
                 4455567789**************************9875.677899*****999998876655432111344444458999999877665544....344555555556666778899999999999987764 PP

  == domain 2    score: 61.1 bits;  conditional E-value: 2.5e-19
   TIGR02203 347 ealdsislkveaGevvalvGrsGsGkstlvnllpRFyepdsGeillDgvdladlkLasLRrqvalvsqdvvLFddtiaenvaYgeleevdeaeveealaaaylkdlvdklpeGldtevGengskLsGGqRqRlaiaRallkdaPiLiLDeatsaLDneseRl.vqaaLerlmkg..RttlviahRLstiekaDrivvld.dGkiverGth 552
                 ++l++i l+v  G ++ + G+ G Gk+tl++ +   +   +G+ +             +R ++a+ +q+  + + ++ +nv +g+   +dea   ++++a  l+  + +l +G  te+Ge+g +LsGGq+ R+a+aRa +  a   +LD+  sa+D+e   + + + +  l+++   t + + h    ++  D+ v +  +G i  +G+ 
  MMETSP1137-20121227|7519_1 707 STLKDITLNVPRGAIIGVCGPVGCGKTTLLSSILGDVPRVAGRAV-------------VRGEIAFCAQEPWIQNISLRDNVLFGRP--MDEALYARVISACALEXDLLALADGDATEIGERGLNLSGGQKARVALARACYARADTYLLDDVLSAVDAEVGQHlMTKCIAGLLREwgATVIFVTHHTHWLHMCDQGVFMSaHGTIEKQGPP 901
                 589**************************9877666666666644.............6899***********************9..7777778888887787777899************************************************8766167889999986226778899**999*****99988636777667765 PP

  == domain 3    score: 226.8 bits;  conditional E-value: 1.6e-69
   TIGR02203   73 fvsdyllakvsnkvvrdlRkklfeklltlpsayfdkessgsllsrltfdseqvvsaatdvlkvlvretltvigllivllylsWqltlivvvllPvlallvrvvskrlrkiskeiqnsigeltkvveealqgyrvvklfggqeaeakRfdavsnrlrrlalkvasasslssplvqliasv..alavvllialvqaqaga....ltvGelvafitaml.alikplksLtnvsaklqkglaaaesvfallDsppekde...Gtraler..vrGkvefrnvtfrypgddrealdsislkveaGevvalvGrsGsGkstlvnllpRFyepdsGeillDgvdladlkLasLRrqvalvsqdvvLFddtiaenvaYgeleevdeaeveealaaaylkdlvdklpeGldtevGengskLsGGqRqRlaiaRallkdaPiLiLDeatsaLDneseRlvqaaLerlmkgRttlviahRLstiekaDrivvlddGkiverGtheeLlarnG 560 
                  fv  +++  +s + +r +  + ++ ++ +p a+fd ++ g++l+r+ +d ++v  +++     l+  t+ +ig l++l   s  +++ ++ l  v + ++ ++++  r++++    s + + ++  ea++g   ++ f + e      ++  + ++r +  +  a+   +  ++++  +  al+++l + ++   +g+     ++  ++++  + +  l ++l  L    ++l +++++ e++ +    + e+ +    t + ++   rG+++f +vt+ y++   ++ld++ l+v++ e + +vGr G+Gks+++  l R +e +sG i +Dg d+a + L++LR++++++ qd vLF +t+  n+     +e d++++ ++l +  ++  + + p+Gld ++ e+g++Ls GqRq + + Rallk++ +L+LDeat+++D + + l+q +Le  + + t l iahRL ti   Dr+vv+ +G++ e+G+   L +++G
  MMETSP1137-20121227|7519_1 1049 FVRLLVMVFASLRAARIIHDDALKAVIAAPMAFFDTNPLGRILNRFSVDQQKVDVQLSPTASQLIMYTFNLIGTLVILTGNSPWIAISLIPLSIVYVRVAAYYRESSREMQRLDSISKSPIYTAFTEAVNGTPTIQAFRATERFYDENARKFDYNQRAGFVSYGANRWLTVRLEFLSNIllALTALLSVLTHLLAKGSddgsHAAAAMAGLALSYApGLSETLNWLLRQFTTLETMMVSIERLAQYSGIKAEETQphaVTSTADEwpTRGQIKFTAVTMCYRPGLPNVLDDMYLDVAPCEKIGIVGRTGAGKSSVLVCLFRLVELKSGTIEIDGRDIARMPLKELRSRLSIIPQDPVLFTGTLRYNLDP--FNEFDDEHLWRTLGQCSIEAPMRQHPDGLDRPIEERGANLSMGQRQLVCMCRALLKNSRVLVLDEATASVDMDTDALIQRTLETELTQATVLTIAHRLDTIMGNDRVVVMANGRVAETGPPLVLREKEG 1546
                  4444555666666666666788999*************************************************9999887766665555555455555555555555555555567788999***************997643333333333344444444555555566666664431155566666555544444000044444444444433246677888888889999********98876555444431113444444568**************************************************************************************************975..4569*******************************************************************************************************************9877777776 PP

>> TIGR02204  MsbA_rel: ABC transporter, permease/ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.1   0.6    0.0063      0.39      70     229 ..     357     515 ..     333     577 .. 0.78
   2 ?   -1.7   0.1         3   1.9e+02     157     178 ..     562     583 ..     543     597 .. 0.78
   3 !   84.2   0.0   2.9e-26   1.8e-24     355     557 ..     708     900 ..     702     910 .. 0.84
   4 !  205.3   0.0   6.1e-63   3.7e-61      64     556 ..    1037    1536 ..     976    1547 .. 0.80

  Alignments for each domain:
  == domain 1    score: 7.1 bits;  conditional E-value: 0.0063
   TIGR02204  70 vlalatalrfylvsslGervvadlrkavfahllelspaffdknrsgevlsrltadttllksvvGaslsialrnlllliGalamlvitsvkltslvllavPlvllPi.llfgrrvrklsresqdrladasayagealeaiktvqayaseeaersrfdaavek 229
                 +l+la    f+   +   rv   + + v+++ l l+    ++  +g ++s +  d++ l   +   l +     l l+ a++ml      ++++  l v +++lP+ +++gr+  kl+  +  +  + + +++e+l+ ++  + ++ e+   +   ++ e 
  MMETSP1137-20121227|7519_1 357 CLSLAMGQYFWRGYRQSLRVKVAVGQVVYQKALALDHKERQNFGTGSIVSYMQIDAAKLGDSIPY-LHVLSSGPLQLVIAITMLY-NLLGVSGFAGLGVMIIMLPLnIIIGRKTGKLTMATMAKRDKRVKFTNEVLQGMRILKLFSWEDPMLQELLNKREI 515
                 555555555555566666888889999********************************999965.5666677888888998875.56789999999********94578**********9999999***************9999998766655555444 PP

  == domain 2    score: -1.7 bits;  conditional E-value: 3
   TIGR02204 157 svkltslvllavPlvllPillf 178
                  + lt++ ll  P++++P++++
  MMETSP1137-20121227|7519_1 562 FTSLTLFNLLRFPIIVIPMMIT 583
                 456899999999****999864 PP

  == domain 3    score: 84.2 bits;  conditional E-value: 2.9e-26
   TIGR02204 355 aldgldltvrpGetvalvGPsGaGkstllelllrfydPqsGailldGvdlreldpeelrerlalvpqdsalfaasvleniryGrpdasdeeveaaakaaeade.fisklpeGydtllGergvtLsGGqkqriaiarailkdapiLLLdeatsaLdaeseq.lvqqaleelmkg..rttlviahrLatvlkadrivvld.kGriveqGt 557
                 +l+++ l+v  G  + + GP G Gk+tll+ +l         +       r + ++++r ++a+ +q++ +   s ++n+ +Grp   de+++a   +a a e  + +l +G +t++Gerg++LsGGqk r+a+ara  + a   LLd+  sa+dae  q l+ + ++ l ++   t + + h    +  +d+ v +  +G i +qG 
  MMETSP1137-20121227|7519_1 708 TLKDITLNVPRGAIIGVCGPVGCGKTTLLSSILG-------DV------PRVAGRAVVRGEIAFCAQEPWIQNISLRDNVLFGRPM--DEALYARVISACALExDLLALADGDATEIGERGLNLSGGQKARVALARACYARADTYLLDDVLSAVDAEVGQhLMTKCIAGLLREwgATVIFVTHHTHWLHMCDQGVFMSaHGTIEKQGP 900
                 799**************************98763.......22......244568899**************************94..45555555555554415899*************************************************8651578999999985226778899***********999863788888886 PP

  == domain 4    score: 205.3 bits;  conditional E-value: 6.1e-63
   TIGR02204   64 llvvvlvlalatalrfylvsslGervvadlrkavfahllelspaffdknrsgevlsrltadttllksvvGaslsialrnlllliGalamlvitsvkltslvllavPlvllPillfgrrvrklsresq..drladasayag..ealeaiktvqayaseeaersrfdaavekayeaarkrikaralliavvivl..vfgavvlvlWvGardvlagk....lsaGeLaqfvl.yavlvagslgalsevlgelqraaGaaerliellkaksdikaPaqpkalpa..kvrgeiefeevkfay.ParpdqkaldgldltvrpGetvalvGPsGaGkstllelllrfydPqsGailldGvdlreldpeelrerlalvpqdsalfaasvlenir.yGrpdasdeeveaaakaaeadefisklpeGydtllGergvtLsGGqkqriaiarailkdapiLLLdeatsaLdaeseqlvqqaleelmkgrttlviahrLatvlkadrivvldkGriveqG 556 
                     + ++ +   ++r+ +++    r    +  +  + ++    affd+n  g +l r++ d + +   +  + s  +  +++liG+l++l+  s+ ++   +  +Pl ++ + + +   r+ sre q  d+++++  y++  ea++ + t+qa+   e+  +  +++ +   +a+  +  a  +l+    +l  ++ a++++l v ++ + +g+     +a  +a ++l ya   + +l  l   +  l+    ++erl++    k + ++P+  ++ +   ++rg+i+f +v++ y P  p  ++ld++ l v p e++ +vG +GaGks +l  l r  + +sG+i +dG d++ +  +elr+rl+++pqd++lf++  + n+  +   +  de++ +   +++ +  +++ p+G d ++ erg +Ls Gq+q + + ra+lk++++L+Ldeat+++d +++ l+q+ le+  ++ t l iahrL t++  dr+vv+ +Gr+ e+G
  MMETSP1137-20121227|7519_1 1037 YAGISMIASGMIFVRLLVMVFASLRAARIIHDDALKAVIAAPMAFFDTNPLGRILNRFSVDQQKVDVQLSPTASQLIMYTFNLIGTLVILTGNSPWIA---ISLIPLSIVYVRV-AAYYRESSREMQrlDSISKSPIYTAftEAVNGTPTIQAFRATERFYDENARKFDYNQRAGFVSYGANRWLTVRLEFLsnILLALTALLSVLTHLLAKGSddgsHAAAAMAGLALsYAPGLSETLNWLLRQFTTLETMMVSIERLAQYSGIKAEETQPHAVTSTADewPTRGQIKFTAVTMCYrPGLP--NVLDDMYLDVAPCEKIGIVGRTGAGKSSVLVCLFRLVELKSGTIEIDGRDIARMPLKELRSRLSIIPQDPVLFTGTLRYNLDpFN--EFDDEHLWRTLGQCSIEAPMRQHPDGLDRPIEERGANLSMGQRQLVCMCRALLKNSRVLVLDEATASVDMDTDALIQRTLETELTQATVLTIAHRLDTIMGNDRVVVMANGRVAETG 1536
                  33444444455678888888888898889999999********************************************************9999875...4556666665443.4456778888776699999998874449***********9887766666666666666666666666666665444422455556666665665555540000333333333222555555555555556666777777888888888888888888776666542279************955555..79******************************************************************************97354..556999*************************************************************************************************************99 PP

>> TIGR02857  CydD: thiol reductant ABC exporter, CydD subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   1.0     0.022       1.3      19     209 ..     319     509 ..     303     567 .. 0.72
   2 !  103.2   0.0     6e-32   3.7e-30     336     527 ..     707     887 ..     690     889 .. 0.90
   3 !  172.8   0.0   4.7e-53   2.9e-51     132     529 .]    1107    1527 ..    1090    1527 .. 0.83

  Alignments for each domain:
  == domain 1    score: 5.6 bits;  conditional E-value: 0.022
   TIGR02857  19 liaqAallarvvssliaagealaelltalaalalvlllRallawlkeaa...aaraaaevksqlrerllekvaalGpavlqkkksgelatlllegvdalddYf..arylpqlvlavivplvilaavltadwisal.illltlPlipiFmiLiGsaaqaaarkqlaalsrLsghfldlvrglptLklfgrakaeaaai 209
                   a   ++ ++vs +  +g+ + + ++al+ ++++++   +l+++  ++   + r +++vk ++ + + +k++al  +  q+  +g++++ +     +l d +   + l    l +++ +++l  +l  +  ++l ++++ lPl     i+iG+++ + + + +a+ ++  ++  ++++g+  Lklf  ++   +++
  MMETSP1137-20121227|7519_1 319 NFANPLFINTIVSYI--DGKLALSPAVALLCALGMFASNTCLSLAMGQYfwrGYRQSLRVKVAVGQVVYQKALALDHKERQNFGTGSIVSYMQIDAAKLGDSIpyLHVLSSGPLQLVIAITMLYNLLGVSGFAGLgVMIIMLPL----NIIIGRKTGKLTMATMAKRDKRVKFTNEVLQGMRILKLFSWEDPMLQEL 509
                 555555555555555..4443333344445555566667777777666523367899*********************9999999*9999999988888775410344555667778888888888888888877355555554....4679*****************99****************9887766665 PP

  == domain 2    score: 103.2 bits;  conditional E-value: 6e-32
   TIGR02857 336 palkevsltvepgelvalvGaSGaGKstllklllgfvepteGailvngaelaeldadswrkqiawvpQkPllfegtvaenirlarkdaseaevkealeragldelvkalpqgleteiGergagLSgGqrqRlaLArallrdapllllDEPtahLDaeteaev.lealrela..egrtvllvaHrlalaeladkiv 527
                   lk++ l+v+ g +++++G+ G+GK+tll+ +lg v+   G+ +v g+             ia+ +Q+P++ + ++++n+ ++r+   ea  ++++++++l+  + al +g +teiGerg +LSgGq+ R+aLAra +  a+  llD   +++Dae  +++ ++ ++ l+   g+tv++v+H++++++ +d+ v
  MMETSP1137-20121227|7519_1 707 STLKDITLNVPRGAIIGVCGPVGCGKTTLLSSILGDVPRVAGRAVVRGE-------------IAFCAQEPWIQNISLRDNVLFGRPMD-EALYARVISACALEXDLLALADGDATEIGERGLNLSGGQKARVALARACYARADTYLLDDVLSAVDAEVGQHLmTKCIAGLLreWGATVIFVTHHTHWLHMCDQGV 887
                 57999********************************977777777666.............***********************975.55699***************************************************************988761567888875559*****************976 PP

  == domain 3    score: 172.8 bits;  conditional E-value: 4.7e-53
   TIGR02857  132 plvilaavltadwisalill......ltlPlipiFmiLiGsaaq.aaarkqlaalsrLsg.....hfldlvrglptLklfgrakaeaaaikriseeyrerTmevLriAfLSslvLellatlsvAlvAVyiGlrll......ag.kldlaegLlvLlLaPevylPlRqlgaqyHakaegvaaaealvevld...aeeqpeaekapltaaass.slelenvsvay.egrkpalkevsltvepgelvalvGaSGaGKstllklllgfvepteGailvngaelaeldadswrkqiawvpQkPllfegtvaenirlarkdaseaevkealeragldelvkalpqgleteiGergagLSgGqrqRlaLArallrdapllllDEPtahLDaeteaevlealrelaegrtvllvaHrlalaeladkivvl 529 
                  p +  +++ t ++i +l++l      +++ lip+ ++ +  aa  +++ ++++ l+ +s+     +f + v+g pt+++f+++++  ++ +r  +  +++           ++ Le+l+ +  Al A    l+ l       g + + a + l+L  aP + ++l  l  q+   ++ + ++e l++      +e+qp+a ++ +++ +++ +++++ v++ y +g  ++l+++ l+v+p e++++vG  GaGKs++l +l ++ve ++G+i+++g+++a +  +++r++++ +pQ P+lf gt++ n+   + + +++++ + l ++ ++  +++ p+gl+++i erga+LS Gqrq + + rall+++++l+lDE ta++D +t+a ++++l+  ++++tvl +aHrl ++   d++vv+
  MMETSP1137-20121227|7519_1 1107 PTASQLIMYTFNLIGTLVILtgnspwIAISLIPLSIVYVRVAAYyRESSREMQRLDSISKspiytAFTEAVNGTPTIQAFRATERFYDENARKFDYNQRAGFVSYGANRWLTVRLEFLSNILLALTALLSVLTHLlakgsdDGsHAAAAMAGLALSYAPGLSETLNWLLRQFTTLETMMVSIERLAQYSGikaEETQPHAVTSTADEWPTRgQIKFTAVTMCYrPGLPNVLDDMYLDVAPCEKIGIVGRTGAGKSSVLVCLFRLVELKSGTIEIDGRDIARMPLKELRSRLSIIPQDPVLFTGTLRYNLDPFN-EFDDEHLWRTLGQCSIEAPMRQHPDGLDRPIEERGANLSMGQRQLVCMCRALLKNSRVLVLDEATASVDMDTDALIQRTLETELTQATVLTIAHRLDTIMGNDRVVVM 1527
                  666666666677777766663333335788999998888887752456677888888886333337****************999877766666655555444444444445666666666666666554444333655554456677777789999**************************99998775456677777777766666669***********99999*********************************************************************************9765.5667779**************************************************************************************************987 PP

>> TIGR00958  3a01208: antigen peptide transporter 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.1   1.3   0.00029     0.018     181     365 ..     323     508 ..     304     597 .. 0.72
   2 !   69.8   0.1   5.2e-22   3.2e-20     496     696 ..     708     900 ..     702     906 .. 0.82
   3 !  194.2   0.0   1.2e-59   7.6e-58     211     705 ..    1041    1546 ..     990    1553 .. 0.82

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 0.00029
   TIGR00958 181 Pkytgrvidtllqdksvealakaiflltlls.laSsllaglrgGsfeyama....rinlriredlfksllrQdigFfdenktGeltSRlssDtstvseslsl..nvnvllrnlvkllgllifmlslSprLtl.vtllalPlvllaekvfgkvyqklseevqeavakanqvaeEalsglrTVrSFaaEekEasr 365
                 P ++  +++ + +     al+ a+ ll+ l  +aS     l  G + +       r++ ++ + ++++ l  d +  ++  tG+++S +  D++++ +s++    ++    +lv +++ l+ +l +S    l v ++ lPl +++ ++ gk   ++  +      k  +  +E+l g+r  + F+ E+  ++ 
  MMETSP1137-20121227|7519_1 323 PLFINTIVSYIDG---KLALSPAVALLCALGmFASNTCLSLAMGQYFWRGYrqslRVKVAVGQVVYQKALALDHKERQNFGTGSIVSYMQIDAAKLGDSIPYlhVLSSGPLQLVIAITMLYNLLGVSGFAGLgVMIIMLPLNIIIGRKTGKLTMATMAKRD----KRVKFTNEVLQGMRILKLFSWEDPMLQE 508
                 5555555555544...45788899999988526888889999999765544001166666677788888888888899999*******************96224677778899999999999999977666588999************99888877755....455677899***********99865543 PP

  == domain 2    score: 69.8 bits;  conditional E-value: 5.2e-22
   TIGR00958 496 vlkdLtftlepGevvalVGPsGsGKStvaallenlYqPtgGqvllDgkplkeydhkylhrkvalVgqEPvlfsgsvreNiaYGltktedeevta.aakaanahdFiselekgydtevgekGsqlsgGqkqriAiARALvrkPrvLiLDeAtSALDaeveqllqe.....sksaksrtvlliahrLstvekadkilvlk.kgsvvelGt 696
                  lkd+t+++  G ++ + GP G GK t  + +             D  ++       ++ ++a  +qEP + + s+r+N+ +G   + de + a +  a+  +  +  l +g  te+ge+G  lsgGqk r+A+ARA   +    +LD+  SA+Daev q l +       ++ + tv+ ++h+ +  + +d+ ++++ +g+++++G 
  MMETSP1137-20121227|7519_1 708 TLKDITLNVPRGAIIGVCGPVGCGKTTLLSSIL-----------GDVPRVA--GRAVVRGEIAFCAQEPWIQNISLRDNVLFGRP-M-DEALYArVISACALEXDLLALADGDATEIGERGLNLSGGQKARVALARACYARADTYLLDDVLSAVDAEVGQHLMTkciagLLREWGATVIFVTHHTHWLHMCDQGVFMSaHGTIEKQGP 900
                 59999********************99887653...........2333332..34567889**********************53.3.44444414555666777999************************************************99888777566665667799****************9888752789999985 PP

  == domain 3    score: 194.2 bits;  conditional E-value: 1.2e-59
   TIGR00958  211 slaSsllaglrgGsfeyamarinlriredlfksllrQdigFfdenktGeltSRlssDtstvseslslnvnvllrnlvkllgllifmlslSprLtlvtllalPlvllaekvfgkvyqklseevq..eavakan..qvaeEalsglrTVrSFaaEe....kEasrfkekle.eilqlnkkkalayalylwttellgllilvlvLayGgqlvlegkvssgnLvs....F.lLYqlqlgeavreLsevysellkavGasekvFeyldRkP..qlelsgtlapk..nleGkveFqdVsFsYPsrpdkp.vlkdLtftlepGevvalVGPsGsGKStvaallenlYqPtgGqvllDgkplkeydhkylhrkvalVgqEPvlfsgsvreNiaYGltktedeevtaaakaanahdFiselekgydtevgekGsqlsgGqkqriAiARALvrkPrvLiLDeAtSALDaeveqllqe..sksaksrtvlliahrLstvekadkilvlkkgsvvelGthkqLmeked 705 
                  s+  s + ++r  +  +a+ r  + i+ d +k+++   ++Ffd+n+ G +  R s D ++v   ls +++ l+ +   l+g+l+++   Sp ++ ++l+ l +v +    +  +y++ s+e+q  ++++k+       Ea+ g +T++ F a e    + a++f  + +    +    + l++ l+++++ ll+l+ l++vL   ++l+ +g  +  +  +      l Y   l+e ++ L+  ++ l     + e++ +y   k   + ++ +t + +    +G+++F  V+  Y  rp  p vl d+ + ++p e + +VG  G GKS+v   l +l + ++G++ +Dg+++  +  k l++++ ++ q+Pvlf+g++r N+    ++ +de++  +  ++ ++  + + ++g d  ++e+G  ls Gq+q + + RAL+++ rvL+LDeAt+ +D ++++l+q+    + ++ tvl iahrL t+   d+++v+ +g+v e+G    L+eke+
  MMETSP1137-20121227|7519_1 1041 SMIASGMIFVRLLVMVFASLRAARIIHDDALKAVIAAPMAFFDTNPLGRILNRFSVDQQKVDVQLSPTASQLIMYTFNLIGTLVILTGNSPWIA-ISLIPLSIVYV---RVAAYYRESSREMQrlDSISKSPiyTAFTEAVNGTPTIQAFRATErfydENARKFDYNQRaGFVSYGANRWLTVRLEFLSNILLALTALLSVL---THLLAKGSDDGSHAAAamagLaLSYAPGLSETLNWLLRQFTTLETMMVSIERLAQYSGIKAeeTQPHAVTSTADewPTRGQIKFTAVTMCY--RPGLPnVLDDMYLDVAPCEKIGIVGRTGAGKSSVLVCLFRLVELKSGTIEIDGRDIARMPLKELRSRLSIIPQDPVLFTGTLRYNLD-PFNEFDDEHLWRTLGQCSIEAPMRQHPDGLDRPIEERGANLSMGQRQLVCMCRALLKNSRVLVLDEATASVDMDTDALIQRtlETELTQATVLTIAHRLDTIMGNDRVVVMANGRVAETGPPLVLREKEG 1546
                  3334444556677788999999999******************************************************************988.47776555555...35678999999999778****96225678************9865122134455543333034455555566666666666666555555554...566665554433333311112155******************************9965443003444444333311689************..5554339******************************************************************************87.689999**************************************************************************97778899********************************9999999987 PP

>> TIGR01846  type_I_sec_HlyB: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.5      0.25        15      87     177 ..     507     597 ..     467     600 .. 0.76
   2 !   74.8   0.0   1.6e-23     1e-21     469     673 ..     705     899 ..     697     909 .. 0.83
   3 !  190.4   0.0   1.7e-58     1e-56     219     691 ..    1071    1555 ..    1036    1558 .] 0.80

  Alignments for each domain:
  == domain 1    score: 1.5 bits;  conditional E-value: 0.25
   TIGR01846  87 ydaeedkpekldkevlealwegkvillakr.evlgkkakfglsWfipavlryrkllrevllislllqllalvsPllfevvidkvlvhrglst 177
                 +++ +++  +l++   + lw+g +++l ++  vl +   f l   + + l   k ++ + l  l l+   +v P++   vid  +vhr ls 
  MMETSP1137-20121227|7519_1 507 QELLNKREIELKQIRGNMLWSGLIMFLFTAtPVLVTCSTFVLYTVLGNELTAAKAFTSLTLFNL-LRFPIIVIPMMITRVIDLAVVHRRLSK 597
                 5555555556666666788888888887773445588888888888888888888887766654.67778899***************9985 PP

  == domain 2    score: 74.8 bits;  conditional E-value: 1.6e-23
   TIGR01846 469 spevlsnlsldikaGeviGivGpsGsGkstltkllqrlyvPekGrvlvdgvdlaladPawlrrqvgvvlqenvlfsrsirdnialakPaise..ekviaaaklaGahdfiselkqGyetevgekGaalsGGqrqrialaralvanPrilildeatsaldyeseavimrn.lreick..grtviiiahrlstvraadrilvl.ekGkivesG 673
                  p+ l++++l+++ G +iG+ Gp G+Gk+tl              +l d   +  a  a++r +++   qe  + + s+rdn+  ++P  +   ++vi a  l      + +l +G  te+ge+G +lsGGq+ r+alara  a     +ld+  sa+d+e  + +m + +  + +  g tvi ++h    ++ +d+ + +  +G i  +G
  MMETSP1137-20121227|7519_1 705 MPSTLKDITLNVPRGAIIGVCGPVGCGKTTLLS-----------SILGDVPRV--AGRAVVRGEIAFCAQEPWIQNISLRDNVLFGRPMDEAlyARVISACAL--EX-DLLALADGDATEIGERGLNLSGGQKARVALARACYARADTYLLDDVLSAVDAEVGQHLMTKcIAGLLRewGATVIFVTHHTHWLHMCDQGVFMsAHGTIEKQG 899
                 6899*************************9854...........345444444..356889999***********************9655411566665555..33.4679*************************************************9888776625666654589****************966662578988888 PP

  == domain 3    score: 190.4 bits;  conditional E-value: 1.7e-58
   TIGR01846  219 yrhllalPlsyfesrrvGdtvarvreleq.irefltgsaltvvldllfvvvflavmffyspkltlvvlvslviylllsvivspilrkrved..kfeksaea..qsflvesvtgietikasavepqfkrrWerqlaayvaasfkvtklgnlasqaieliqkltaalllwfGa..klvlkGelsvGqlvafnm......lagrvsqPvlrlaqlWqdfqqvkialerlGdildsPteassagkaalpe....lkGaiefenirfrykedspevlsnlsldikaGeviGivGpsGsGkstltkllqrlyvPekGrvlvdgvdlaladPawlrrqvgvvlqenvlfsrsirdnialakPaiseekviaaaklaGahdfiselkqGyetevgekGaalsGGqrqrialaralvanPrilildeatsaldyeseavimrnlreickgrtviiiahrlstvraadrilvlekGkivesGkheellak.eglyaklyqq 691 
                   + ++a P+++f++   G ++ r    +q +   l  +a   +  +++++ +++ +   +++  ++ + sl+   +++v v++  r+   +  + ++ +++   + ++e+v g  ti+a    ++f ++  r++    +a+f +  +  + +  +e+++ +  al   + +  +l+ kG+   G   a  m      +a  +s+ +  l + +     + +++erl +     +e++++ +++ +      +G+i+f  +++ y++  p+vl+++ ld+++ e iGivG++G+Gks +   l rl   + G + +dg d+a +  + lr +++++ q+ vlf +++r n+   + + ++e++         ++ + + ++G +  ++e+Ga+ls Gqrq + + ral++n r+l+ldeat+++d++++a+i+r l+      tv++iahrl+t+   dr++v+ +G+++e G   +l +k +++  +l+  
  MMETSP1137-20121227|7519_1 1071 LKAVIAAPMAFFDTNPLGRILNRFSVDQQkVDVQLSPTAS-QL--IMYTFNLIGTLVILTGNSPWIAI-SLIPLSIVYVRVAAYYRESSREmqRLDSISKSpiYTAFTEAVNGTPTIQAFRATERFYDENARKFDYNQRAGFVSYGANRWLTVRLEFLSNILLALTALLSVltHLLAKGS-DDGSHAAAAMaglalsYAPGLSETLNWLLRQFTTLETMMVSIERLAQYSGIKAEETQPHAVTSTAdewpTRGQIKFTAVTMCYRPGLPNVLDDMYLDVAPCEKIGIVGRTGAGKSSVLVCLFRLVELKSGTIEIDGRDIARMPLKELRSRLSIIPQDPVLFTGTLRYNLDPFN-EFDDEHLWRTLGQCSIEAPMRQHPDGLDRPIEERGANLSMGQRQLVCMCRALLKNSRVLVLDEATASVDMDTDALIQRTLETELTQATVLTIAHRLDTIMGNDRVVVMANGRVAETGPPLVLREKeGSRLKELWDA 1555
                  5678999**************9986433303333333332.33..56777778888888888888765.555556677888888886554400444433331145679************9999999999*****************************999887666655226666665.456666666522111233445555556666667777889******99877777766654444332122289*************************************************************************************************98776.7899***99999999******************************************************************99999*******************************9999988845577788876 PP

>> TIGR02868  CydC: thiol reductant ABC exporter, CydC subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.2   0.1    0.0058      0.35      82     315 ..     374     607 ..     358     651 .. 0.72
   2 !  101.9   0.0   1.2e-31   7.4e-30     345     529 ..     702     876 ..     681     877 .. 0.90
   3 !  156.9   0.1   2.6e-48   1.6e-46     130     530 .]    1104    1515 ..    1047    1515 .. 0.79

  Alignments for each domain:
  == domain 1    score: 7.2 bits;  conditional E-value: 0.0058
   TIGR02868  82 lrslgelRvrvYerLaraalallarlrrGdlLarlvaDvdalqdllvRvivPlvvAlvvalaavaliallsvaaalvlaaallvalvvaplvslraarsaeqalarlrselaaqlldllegaaelvvaGaleavlaqv.eeaereltraekraaaa...ealgaaltllaaGlavllallvgveavadgrlapvalAvlvLlpLaafealaalpaAaqqltrvraaaeRieevldak....v 315
                 lr+  ++   vY++      + ++ + +G++++ +  D  +l d +    v +   l +++a+++l  ll v     + ++++++++ + ++  r + +   a  ++r +  + + ++l+g+  l+ +   +++l+++ +++e el +++  + +      l +a  +l++ ++ +l +++g+e +a+++ +   l+++ Ll +++    +++p  + ++  ++ + +R+++ l a+    v
  MMETSP1137-20121227|7519_1 374 LRVKVAVGQVVYQKALALDHKERQNFGTGSIVSYMQIDAAKLGDSIPYLHVLSSGPLQLVIAITMLYNLLGVSG--FAGLGVMIIMLPLNIIIGRKTGKLTMATMAKRDKRVKFTNEVLQGMRILKLFSWEDPMLQELlNKREIELKQIRGNMLWSgliMFLFTATPVLVTCSTFVLYTVLGNELTAAKAFT--SLTLFNLLRFPI----IVIPMMITRVIDLAVVHRRLSKFLSAPerpvV 607
                 677777778899999999999***********************998877777777777777777777666544..334444555666677888888888889999999999999****************9999986256777888898888775111446689999999999999999999665555443..455566665554....56677777777777777788777777733331 PP

  == domain 2    score: 101.9 bits;  conditional E-value: 1.2e-31
   TIGR02868 345 pgaee.vlkgvsldlepGervavvGasGaGKstLlallaglldplkGevtldgvsvaslsesevrrvvsvlaqdaHlFdttvreNlrlarpdatdeellaaLervgLadwlraLpdGldtklgeggarlSGGerqRlalARaLladapvllLDEPtehLDaeteeelledLlaae...egrtvvlvthr 529
                 + + +  lk+++l+++ G+ + v G+ G+GK+tLl+ ++g ++  +G+ ++ g              ++++aq++ + + ++r+N++++rp  +++  ++++++  L+  l aL dG  t++ge+g  lSGG++ R+alARa  a a+  lLD     +Dae++++l+++ +a++    g tv++vth+
  MMETSP1137-20121227|7519_1 702 EASMPsTLKDITLNVPRGAIIGVCGPVGCGKTTLLSSILGDVPRVAGRAVVRG-------------EIAFCAQEPWIQNISLRDNVLFGRPM-DEALYARVISACALEXDLLALADGDATEIGERGLNLSGGQKARVALARACYARADTYLLDDVLSAVDAEVGQHLMTKCIAGLlreWGATVIFVTHH 876
                 45555589******************************************999.............79**********************94.55566789*********************************************************************998751115677******9 PP

  == domain 3    score: 156.9 bits;  conditional E-value: 2.6e-48
   TIGR02868  130 vivPlvvAlvvalaavaliallsvaaalvlaaall...valvvaplvslraarsaeqalarlrselaaqlldllegaaelvvaGaleavlaqveea...ereltraekraaaaealga.altllaaGlavllallvgv..eavadgrlapvalAvlvLlpL.aafealaalpaAaqqltrvraaaeRieevldakvevaeasap.aaeaaasekptlelrdlsvsypgaee.vlkgvsldlepGervavvGasGaGKstLlallaglldplkGevtldgvsvaslsesevrrvvsvlaqdaHlFdttvreNlrlarpdatdeellaaLervgLadwlraLpdGldtklgeggarlSGGerqRlalARaLladapvllLDEPtehLDaeteeelledLlaaeegrtvvlvthrl 530 
                   ++P ++ l+++      + +++      +a++l+   +  v +++  + ++r+ ++    ++s ++ + +++++g+++++++ a e++ ++ +++   ++++  ++  a ++  ++   l+ ++++l++ll++l+    +++ dg++a++a+A l L     + e l+ l   + +l+++  + eR+++    k e+ +++a    +++ +++ ++++ ++++ y  + + vl+++ ld++p e++ +vG++GaGKs +l  l++l++ ++G++ +dg ++a +  +e+r + s+++qd+ lF  t+r Nl    ++ +de l++ L +  ++  +r+ pdGld  ++e+ga lS G+rq + + RaLl++ +vl+LDE t+++D +t + + ++L   +++ tv+ ++hrl
  MMETSP1137-20121227|7519_1 1104 QLSPTASQLIMYTFNLIGTLVILTGNSPWIAISLIplsIVYVRVAAYYRESSREMQRLDSISKSPIYTAFTEAVNGTPTIQAFRATERFYDENARKfdyNQRAGFVSYGANRWLTVRLeFLSNILLALTALLSVLTHLlaKGSDDGSHAAAAMAGLALSYApGLSETLNWLLRQFTTLETMMVSIERLAQYSGIKAEETQPHAVtSTADEWPTRGQIKFTAVTMCYRPGLPnVLDDMYLDVAPCEKIGIVGRTGAGKSSVLVCLFRLVELKSGTIEIDGRDIARMPLKELRSRLSIIPQDPVLFTGTLRYNLD-PFNEFDDEHLWRTLGQCSIEAPMRQHPDGLDRPIEERGANLSMGQRQLVCMCRALLKNSRVLVLDEATASVDMDTDALIQRTLETELTQATVLTIAHRL 1515
                  46788888888877777777777776666666665111444444455555667777777788999************************99887661114444445555555555443244445555555555543332246789************97551699************************887777333333222022233347899*******999777666********************************************************************************9.56799********************************************************************************************96 PP

>> TIGR03796  NHLM_micro_ABC1: NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.9   0.1   1.6e-17     1e-15     494     695 ..     708     901 ..     701     911 .. 0.87
   2 !  184.6   0.0   9.2e-57   5.6e-55     202     703 ..    1040    1546 ..     987    1552 .. 0.78

  Alignments for each domain:
  == domain 1    score: 54.9 bits;  conditional E-value: 1.6e-17
   TIGR03796 494 liedfslslkpGqrvAlvGgsGsGkstiaklvaGlyepwsGeilfDgkpreeiprevlanslalvdqdivlfegtvrdnltlwdetipeedlvrAakDAaihdvilarpggyeaelaegganlsGGqrqRleiARaLvknPsiLilDEatsaLDaetEkaiden.....lrrRgctciivaHRLstiRdcdeiivle.rGkvverGtH 695
                  ++d++l++  G+ + + G+ G+Gk t+   + G    ++              r+v++  +a+  q+  + + ++rdn+ l+ + + e+   r +   a++ ++la+++g ++e+ e g nlsGGq+ R+ +ARa  ++    +lD++ sa+Dae+ ++++ +     lr+ g t+i v+H    +  cd+ + +  +G++ ++G  
  MMETSP1137-20121227|7519_1 708 TLKDITLNVPRGAIIGVCGPVGCGKTTLLSSILGDVPRVA-------------GRAVVRGEIAFCAQEPWIQNISLRDNV-LFGRPMDEALYARVISACALEXDLLALADGDATEIGERGLNLSGGQKARVALARACYARADTYLLDDVLSAVDAEVGQHLMTKciaglLREWGATVIFVTHHTHWLHMCDQGVFMSaHGTIEKQGPP 901
                 68999*********************97655555444444.............477888899*****************8.99****9999999999999********************************************************98776654333439**********************9988538999998865 PP

  == domain 2    score: 184.6 bits;  conditional E-value: 9.2e-57
   TIGR03796  202 ltallqvvltllqlallrrleiklavassarflwhilrlPveffaqRaageiasRvqlndk.vaellsgqlattvldlvlvvfyalvmllydlvlaliaialaainvlalqlvsrkrvdanrrlqq.dagkla...gvaiaglqsietlkAsglesdffsrwaGyqakl.lnaeqelgvatallsvlpelltsltsalilvvgglrvlege.ltiGmlvafqsllas....flepveklvglvselqeleadlerldDvlenpvdeeleeeeekaaeseekekLsGkvelrnvtfgysaleapliedfslslkpGqrvAlvGgsGsGkstiaklvaGlyepwsGeilfDgkpreeiprevlanslalvdqdivlfegtvrdnltlwdetipeedlvrAakDAaihdvilarpggyeaelaegganlsGGqrqRleiARaLvknPsiLilDEatsaLDaetEkaidenlrrR..gctciivaHRLstiRdcdeiivlerGkvverGtHeellakeg 703 
                  +++ + + + +++l +++  + + a  +  + l+ +++ P+ ff+    g i +R +++++ v   ls + ++ ++ ++ ++  ++++   ++++a+  i l+++ v + ++  r+   + +rl +  ++ ++   + a++g  +i++++A+    d  +r   y  ++   +  +    t++l+ l ++l +lt+   l v + ++ +g+     +  a+  l+ s    ++e ++ l+ + ++l+++   +erl      +++e++ +  + +++++e    +G+++++ vt  y +  +++++d+ l++ p +++ +vG  G+Gks +   +  l e  sG+i +Dg++ +++p + l++ l+++ qd vlf+gt+r nl  ++e   +e+l r +    i+  + + p+g++  ++e ganls Gqrq + + RaL kn  +L+lDEat+++D  t+  i++ l       t++ +aHRL ti   d+++v+ +G+v e+G    l +keg
  MMETSP1137-20121227|7519_1 1040 ISM-IASGMIFVRLLVMVFASLRAARIIHDDALKAVIAAPMAFFDTNPLGRILNRFSVDQQkVDVQLSPTASQLIMYTFNLIGTLVILTGNSPWIAISLIPLSIVYVRVAAYY-RESSREMQRLDSiSKSPIYtafTEAVNGTPTIQAFRATERFYDENARKFDYNQRAgFVSYGANRWLTVRLEFLSNILLALTAL--LSVLTHLLAKGSdDGSHAAAAMAGLALSyapgLSETLNWLLRQFTTLETMMVSIERLAQYSGIKAEETQPH--AVTSTADE-WPTRGQIKFTAVTMCYRPGLPNVLDDMYLDVAPCEKIGIVGRTGAGKSSVLVCLFRLVELKSGTIEIDGRDIARMPLKELRSRLSIIPQDPVLFTGTLRYNLDPFNE-FDDEHLWRTLGQCSIEAPMRQHPDGLDRPIEERGANLSMGQRQLVCMCRALLKNSRVLVLDEATASVDMDTDALIQRTLETEltQATVLTIAHRLDTIMGNDRVVVMANGRVAETGPPLVLREKEG 1546
                  443.455667889999999999***********************************98752666788887888888888888999999999999988777776665554443.33333344443313344440014455555555555555443333333333333321444444455566666666666665532..23323333333202222334444455541111677788888888888888888888888777777766666..33344444.889***********************************************99999**************************************************97.79****************************************************************************9874327899****************************9888877776 PP

>> TIGR01193  bacteriocin_ABC: ABC-type bacteriocin transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.7   0.0   6.9e-19   4.2e-17     489     690 ..     708     899 ..     704     906 .. 0.83
   2 !  169.6   0.0   3.9e-52   2.4e-50     212     694 ..    1047    1540 ..     999    1552 .. 0.83

  Alignments for each domain:
  == domain 1    score: 59.7 bits;  conditional E-value: 6.9e-19
   TIGR01193 489 vledislkikknekitlvGlsGsGkstlakllvkffqaesGeillngkslkdidkhelrqlinylPqePfifsGsilenlllgakenvsqeeikkaveiaeikddieklplGyqtelseeassisgGqkqrlalarallsdskvlildestsnldlltek....kivenllklkdktiifvahrlsvakksdkiivld.eGkiieqG 690
                  l+di+l++ +   i + G  G Gk+tl   +++                    +  +r  i++  qeP+i + s+ +n+l+g    +++    ++++   ++ d+  l  G  te+ e + ++sgGqk r+alara  + ++ ++ld++ s +d  + +    k +  ll+    t+ifv+h  +  ++ d+ + ++ +G i  qG
  MMETSP1137-20121227|7519_1 708 TLKDITLNVPRGAIIGVCGPVGCGKTTLLSSILGDVPRVA-------------GRAVVRGEIAFCAQEPWIQNISLRDNVLFGRP--MDEALYARVISACALEXDLLALADGDATEIGERGLNLSGGQKARVALARACYARADTYLLDDVLSAVDAEVGQhlmtKCIAGLLREWGATVIFVTHHTHWLHMCDQGVFMSaHGTIEKQG 899
                 6899999999999999999999999999876654433333.............47789************************964..4555667777888889****************************************************977661222556667888889****************999887245554455 PP

  == domain 2    score: 169.6 bits;  conditional E-value: 3.9e-52
   TIGR01193  212 lsyikafllivlgqrlsidiilsyikhlfelPmsffstrrvGeivsrftdaskiidalastilslfldlsilvivglvlvlqniklfllslvaiPv.yaviiilfkktfeklnkdameanavlnssiiedlnGietiksltseeerykkidsefadylekslkyakae.avqqalkavlklilnvvilwvGallvirekltlGqllt..fn.allsy...flnPleniinlqpklqaarvannrlnevylvdsefkekkkltelen...lngdievndvsysyGyg.sevledislkikknekitlvGlsGsGkstlakllvkffqaesGeillngkslkdidkhelrqlinylPqePfifsGsilenlllgakenvsqeeikkaveiaeikddieklplGyqtelseeassisgGqkqrlalarallsdskvlildestsnldlltekkivenl.lklkdktiifvahrlsvakksdkiivldeGkiieqGshke 694 
                  + +++  +++  + r ++ i  + +k ++  Pm+ff t   G i+ rf+  ++ +d   s + s ++  ++ +i +lv+++ n+    +sl+ + + y+ +   + ++ +++++    +++ + ++  e +nG  ti+++ + e  y++  ++f    +  ++   a+      l  + ++ l+++ l    + ++++    G   +     + lsy   + + l+ ++   + l +  v+ +rl +   +++e+++ + +t++     ++g+i++  v+  y  g  +vl+d+ l++   eki +vG +G+Gks++   l ++ + +sG+i+++g +++ +  +elr  ++ +Pq+P++f+G++  nl  +  ++ ++e++++++    i++ +++ p G++  + e ++++s Gq+q +++ rall +s+vl+lde+t+++d+ t+  i   l  +l++ t++ +ahrl+     d+++v+ +G++ e+G    
  MMETSP1137-20121227|7519_1 1047 MIFVRLLVMVFASLRAARIIHDDALKAVIAAPMAFFDTNPLGRILNRFSVDQQKVDVQLSPTASQLIMYTFNLIGTLVILTGNSPWIAISLIPLSIvYVRVAAYYRESSREMQRLDSISKSPIYTAFTEAVNGTPTIQAFRATERFYDENARKFDYNQRAGFVSYGANrWLTVRLEFLSNILLALTALLSVLTHLLAKGSDDGSHAAaaMAgLALSYapgLSETLNWLLRQFTTLETMMVSIERLAQYSGIKAEETQPHAVTSTADewpTRGQIKFTAVTMCYRPGlPNVLDDMYLDVAPCEKIGIVGRTGAGKSSVLVCLFRLVELKSGTIEIDGRDIARMPLKELRSRLSIIPQDPVLFTGTLRYNL--DPFNEFDDEHLWRTLGQCSIEAPMRQHPDGLDRPIEERGANLSMGQRQLVCMCRALLKNSRVLVLDEATASVDMDTDALIQRTLeTELTQATVLTIAHRLDTIMGNDRVVVMANGRVAETGPPLV 1540
                  55677666666666766666677899***********************9999999998988888888888899999999***********9987614445555555555566555556777888999**************99999999998876666666654444044555666666666665555444444444333333322002213345522234556666677799************************99998875333689*******9999766359****************************99**********************************************9996..7888999**********************************************************************99988884579********************************97555 PP

>> TIGR03797  NHLM_micro_ABC2: NHLM bacteriocin system ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   1.8      0.46        28     202     431 ..     371     598 ..     300     617 .. 0.77
   2 !   51.3   0.1   2.3e-16   1.4e-14     464     671 ..     704     904 ..     695     908 .. 0.87
   3 !  181.2   0.0   1.2e-55   7.2e-54     195     676 ..    1044    1546 ..    1027    1553 .. 0.82

  Alignments for each domain:
  == domain 1    score: 0.8 bits;  conditional E-value: 0.46
   TIGR03797 202 RletavdaslqaavwdrLLrlpasfFreysagdLasramgvsqirrllsgatlkallssifallnlvlllvyslkla.lvavllalvaiavtlvlgllqvrkerkllelegklsgltvqlingisKlrvagaeerafaawakefseqrklelkaqriedlltvlnavlpvltsavlfalaisllaaaklslgsflafntafgsflkavtslaetlievlavvplyerakPi 431
                 R + +v++++   v+++ L l  +  +++ +g ++s  m +++ +   s   l+ l s+ + l+  + +l+  l ++  +++ ++++++ +  ++g  + + +  +++ + k   +t ++++g+  l++ + e+ ++ +  ++   + k  +    ++ l+  l ++ pvl++   f+l ++l  +++l++++  +  t f  +   ++ + ++++ v+++  +++r+   
  MMETSP1137-20121227|7519_1 371 RQSLRVKVAVGQVVYQKALALDHKERQNFGTGSIVS-YMQIDAAKLGDSIPYLHVLSSGPLQLVIAITMLYNLLGVSgFAGLGVMIIMLPLNIIIGRKTGKLTMATMAKRDKRVKFTNEVLQGMRILKLFSWEDPMLQELLNKREIELKQIRGNMLWSGLIMFLFTATPVLVTCSTFVLYTVL--GNELTAAKAFTSLTLFNLLRFPIIVIPMMITRVIDLAVVHRRLSKF 598
                 556677788888899999999999999999999987.567887777777778888989988888888888776665515667788888888889999999999999*********************************99987777777777777888888899999999999999888884..6667777666666677777777777777777777776666666555 PP

  == domain 2    score: 51.3 bits;  conditional E-value: 2.3e-16
   TIGR03797 464 dgplvLddvslkiepGefvaivGaSGsGKStllrlLLgFekPesGsvlyDGqdlekldvqavRrqlGvVLQngrllsgsileniaggasltldeaweaarmagleeDikamPmglhTvisegggtlSGGQrQRlliAralvrkPrillfDEATSALDNrt.QaiVseslekl....kvtRiviAHRLSTirnadrilvl.eeGrvveqGsyeeL 671
                 + p +L+d++l++  G  +++ G+ G+GK tll  +Lg + P+       G+       + vR  +    Q+  ++  s+ +n++ g ++       +++  +le D+ a+  g  T i e g +lSGGQ+ R+ +Ara   +    l+D+  SA+D +  Q++ ++ ++ l     +t i + H    ++ +d+ + + ++G + +qG  ++L
  MMETSP1137-20121227|7519_1 704 SMPSTLKDITLNVPRGAIIGVCGPVGCGKTTLLSSILG-DVPRVA-----GR-------AVVRGEIAFCAQEPWIQNISLRDNVLFGRPMDEALYARVISACALEXDLLALADGDATEIGERGLNLSGGQKARVALARACYARADTYLLDDVLSAVDAEVgQHLMTKCIAGLlrewGATVIFVTHHTHWLHMCDQGVFMsAHGTIEKQGPPSSL 904
                 56889********************************9.666532.....33.......45899***********************998777777889999*******************************************************986377777766554222279****************96666267*******88776 PP

  == domain 3    score: 181.2 bits;  conditional E-value: 1.2e-55
   TIGR03797  195 aqslavlRletavdaslqaa..vwd....rLLrlpasfFreysagdLasramgv.sqirrllsgatlkallssifalln.lvlllvyslklalvavllalvaiavtlvlgllqvrkerkllelegklsgltvqlingisKlrvagaeerafaawakefseqrklelkaqriedlltvlnavlpvl..tsavlfalaisll........aaaklslgsflafntafgsflkavtslaetlievlavvplyerakPilea..epEvdeekvdpgkLsGaievdrvtFrYekdgplvLddvslkiepGefvaivGaSGsGKStllrlLLgFekPesGsvlyDGqdlekldvqavRrqlGvVLQngrllsgsileniaggasltldeaweaarmagleeDikamPmglhTvisegggtlSGGQrQRlliAralvrkPrillfDEATSALDNrtQaiVseslek..lkvtRiviAHRLSTirnadrilvleeGrvveqGsyeeLlakeG 676 
                  a++++ +Rl  +v asl+aa  + d     ++  p++fF +   g +++r +   +++  +ls +  ++l+  +f l+  lv+l   s  +a+  + l +v + v ++      +++r     ++ + +   + +ng   ++   a+er++ + a++f  +++  +    ++ +ltv  + l+ +  + ++l  +++ ll        +aa+  +g  l+++  ++++l+ +++  +tl  ++  +   ++   i ++  +p + ++++d    +G+i+   vt +Y++  p vLdd+ l + p e ++ivG  G+GKS++l  L+   + +sG++  DG+d++++ ++++R +l ++ Q+  l++g++  n+   +++  ++ w  + + ++e  +++ P gl   i+e g++lS GQrQ + + ral +  r+l++DEAT  +D  t a++  +le+   ++t + iAHRL Ti+  dr++v+++Grv+e+G    L +keG
  MMETSP1137-20121227|7519_1 1044 ASGMIFVRLLVMVFASLRAAriIHDdalkAVIAAPMAFFDTNPLGRILNRFSVDqQKVDVQLSPTA-SQLIMYTFNLIGtLVILTGNSPWIAISLIPLSIVYVRVAAYYRESSREMQRLDSISKSPIYTAFTEAVNGTPTIQAFRATERFYDENARKFDYNQRAGFVSYGANRWLTVRLEFLSNIllALTALLSVLTHLLakgsddgsHAAAAMAGLALSYAPGLSETLNWLLRQFTTLETMMVSIERLAQYSGIKAEetQPHAVTSTADEWPTRGQIKFTAVTMCYRPGLPNVLDDMYLDVAPCEKIGIVGRTGAGKSSVLVCLFRLVELKSGTIEIDGRDIARMPLKELRSRLSIIPQDPVLFTGTLRYNLDPFNEFDDEHLWRTLGQCSIEAPMRQHPDGLDRPIEERGANLSMGQRQLVCMCRALLKNSRVLVLDEATASVDMDTDALIQRTLETelTQATVLTIAHRLDTIMGNDRVVVMANGRVAETGPPLVLREKEG 1546
                  444444444444444444442222300003456799**************8654145777777655.556666666665044444445555555555666666666666666666777777778899************************************999999999999998777764401333444444444479999987677777899999*999***999999999999999999999999999976511556666666777789*************************************************************************************************************************************************************************************98643699*******************************999999998 PP

>> TIGR01842  type_I_sec_PrtD: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0       7.8   4.8e+02     130     186 ..     433     489 ..     371     509 .. 0.73
   2 !   18.9   0.0   1.5e-06   9.4e-05     331     374 ..     706     749 ..     690     761 .. 0.88
   3 !   52.3   0.0   1.2e-16   7.5e-15     437     535 ..     798     899 ..     767     904 .. 0.83
   4 !  116.1   0.0   5.4e-36   3.3e-34     314     535 ..    1317    1536 ..    1281    1543 .. 0.95

  Alignments for each domain:
  == domain 1    score: -3.2 bits;  conditional E-value: 7.8
   TIGR01842 130 piyllvvfllhpylGllalvgavvlvalallneaatkkklkeateasikanklldsa 186
                 +i +++++ l    G++ l  +++++ l ++  + t k +  ++ ++ k+ k+ ++ 
  MMETSP1137-20121227|7519_1 433 VIAITMLYNLLGVSGFAGLGVMIIMLPLNIIIGRKTGKLTMATMAKRDKRVKFTNEV 489
                 345667777777778888888888888888888777777666666666666655555 PP

  == domain 2    score: 18.9 bits;  conditional E-value: 1.5e-06
   TIGR01842 331 kktlkgisfalkaGealaiiGpsgsGkssLarllvGvwlpasGs 374
                  +tlk+i++++  G+++++ Gp g Gk++L   ++G ++ ++G+
  MMETSP1137-20121227|7519_1 706 PSTLKDITLNVPRGAIIGVCGPVGCGKTTLLSSILGDVPRVAGR 749
                 579**********************************9999996 PP

  == domain 3    score: 52.3 bits;  conditional E-value: 1.2e-16
   TIGR01842 437 ilrlpkGYdteigegGaaLsgGqrqRiaLaRalygdPklvvLDePnanLDee.Geqalakalke.lkarkitvvvithrpsllelvdkilvl.kdGalkafG 535
                 +l l +G  teige+G +LsgGq+ R+aLaRa y      +LD+  + +D+e G+  ++k +   l++ ++tv+++th+++ l++ d+ + +  +G++++ G
  MMETSP1137-20121227|7519_1 798 LLALADGDATEIGERGLNLSGGQKARVALARACYARADTYLLDDVLSAVDAEvGQHLMTKCIAGlLREWGATVIFVTHHTHWLHMCDQGVFMsAHGTIEKQG 899
                 57899*********************************************8825555556776537899***************999865551578888877 PP

  == domain 4    score: 116.1 bits;  conditional E-value: 5.4e-36
   TIGR01842  314 egelevenvslvppeekkktlkgisfalkaGealaiiGpsgsGkssLarllvGvwlpasGsvrlDgadlkqwdretlGksiGYlPqdveLfeGtvaeniaRfeenadaekvieaaklagvhelilrlpkGYdteigegGaaLsgGqrqRiaLaRalygdPklvvLDePnanLDeeGeqalakalkelkarkitvvvithrpsllelvdkilvlkdGalkafG 535 
                  +g+++  +v++    +  ++l ++ + + + e ++i+G  g+Gkss+  +l   ++ +sG++++Dg d+ ++  ++l  ++  +Pqd  Lf+Gt+  n+  f+e +d+e++        +   + + p+G d  i e+Ga+Ls Gqrq + + Ral  + +++vLDe  a++D + + al++   e    ++tv++i+hr   +   d+++v+ +G++++ G
  MMETSP1137-20121227|7519_1 1317 RGQIKFTAVTMCYRPGLPNVLDDMYLDVAPCEKIGIVGRTGAGKSSVLVCLFRLVELKSGTIEIDGRDIARMPLKELRSRLSIIPQDPVLFTGTLRYNLDPFNE-FDDEHLWRTLGQCSIEAPMRQHPDGLDRPIEERGANLSMGQRQLVCMCRALLKNSRVLVLDEATASVDMDTD-ALIQRTLETELTQATVLTIAHRLDTIMGNDRVVVMANGRVAETG 1536
                  6888899999998888899*************************************************************************************.********************************************************************9987.5666667789999***************************9988 PP

>> TIGR01192  chvA: glucan exporter ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.5   0.0   8.7e-16   5.4e-14     350     550 ..     708     897 ..     700     904 .. 0.80
   2 !  121.3   0.0   1.6e-37     1e-35     330     562 ..    1315    1547 ..    1133    1555 .. 0.89

  Alignments for each domain:
  == domain 1    score: 49.5 bits;  conditional E-value: 8.7e-16
   TIGR01192 350 gvrdvsfeakagqtvaivgptgagkttlinllqrvydpksgqilidgvdiatvtreslrksiatvfqdagllnrsirenirlgredatdeevveaakaaaasdf.iekrlkgydtlvgergnrlsggerqrlaiarailknapilvldeatsaldvetearv.kdaidalrkn.r.ttfiiahrlstvreadlvlfldqgrliek 550
                  ++d+++++  g  + + gp g gkttl+             il d   +    r  +r  ia   q+  + n s+r+n+ +gr    de +++   +a+a +  +    +g  t +gerg +lsgg++ r+a+ara    a   +ld+  sa+d e    +  + i  l ++   t + ++h    +   d  +f+     iek
  MMETSP1137-20121227|7519_1 708 TLKDITLNVPRGAIIGVCGPVGCGKTTLLSS-----------ILGDVPRV--AGRAVVRGEIAFCAQEPWIQNISLRDNVLFGRP--MDEALYARVISACALEXdLLALADGDATEIGERGLNLSGGQKARVALARACYARADTYLLDDVLSAVDAEVGQHLmTKCIAGLLREwGaTVIFVTHHTHWLHMCDQGVFMSAHGTIEK 897
                 57899**********************9853...........33333333..35788999***********************96..567777766666654431567789999******************************************9876541456665555424144557899999999999999987777776 PP

  == domain 2    score: 121.3 bits;  conditional E-value: 1.6e-37
   TIGR01192  330 nvkgavefrdisfefanssqgv.rdvsfeakagqtvaivgptgagkttlinllqrvydpksgqilidgvdiatvtreslrksiatvfqdagllnrsirenirlgredatdeevveaakaaaasdfiekrlkgydtlvgergnrlsggerqrlaiarailknapilvldeatsaldvetearvkdaidalrknrttfiiahrlstvreadlvlfldqgrliekgsfdeliqkdgr 562 
                    +g+++f  +++ +      v  d+ +++   + + ivg tgagk++++  l r+ + ksg i idg dia +  + lr  ++ + qd  l+  ++r n+   + +  de +  +    + +  + ++ +g d  + erg++ls g+rq + + ra+lkn+ +lvldeat+++d++t+a ++ ++++   + t + iahrl t+   d v+ + +gr+ e g    l +k+g 
  MMETSP1137-20121227|7519_1 1315 PTRGQIKFTAVTMCYRPGLPNVlDDMYLDVAPCEKIGIVGRTGAGKSSVLVCLFRLVELKSGTIEIDGRDIARMPLKELRSRLSIIPQDPVLFTGTLRYNLDPFN-EFDDEHLWRTLGQCSIEAPMRQHPDGLDRPIEERGANLSMGQRQLVCMCRALLKNSRVLVLDEATASVDMDTDALIQRTLETELTQATVLTIAHRLDTIMGNDRVVVMANGRVAETGPPLVLREKEGS 1547
                  46899******999987766661578999999********************************************************************99665.56788999999999*******************************************************************************************************99888888885 PP

>> TIGR03864  PQQ_ABC_ATP: ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.0   0.00014    0.0084      15      62 ..     707     754 ..     702     768 .. 0.84
   2 !   27.8   0.0   5.7e-09   3.5e-07     129     220 ..     812     905 ..     793     918 .. 0.86
   3 !   86.1   0.0   8.7e-27   5.3e-25       9     232 ..    1329    1553 ..    1320    1557 .. 0.89

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 0.00014
   TIGR03864  15 ralddvsltvakgefvaLLGpnGaGkstLfslltrLyeakegeikvaG 62 
                 ++l+d++l+v++g+++ + Gp G Gk+tL+s + + +   +g+  v G
  MMETSP1137-20121227|7519_1 707 STLKDITLNVPRGAIIGVCGPVGCGKTTLLSSILGDVPRVAGRAVVRG 754
                 5799**************************988776666666655555 PP

  == domain 2    score: 27.8 bits;  conditional E-value: 5.7e-09
   TIGR03864 129 kvreLnGGhrrrveiarallhePklLLlDeatvGLDiesraal.veevrelvreeglsvLWathlvdeveaedrlvvl.hkGkvlaqGaaaela 220
                 +  +L+GG++ rv +ara   + +  LlD+    +D+e  ++l ++ +  l re g +v++ th ++ ++  d+ v +  +G + +qG +++l 
  MMETSP1137-20121227|7519_1 812 RGLNLSGGQKARVALARACYARADTYLLDDVLSAVDAEVGQHLmTKCIAGLLREWGATVIFVTHHTHWLHMCDQGVFMsAHGTIEKQGPPSSLG 905
                 55689*********************************987761577999*********************9997766269*******998875 PP

  == domain 3    score: 86.1 bits;  conditional E-value: 8.7e-27
   TIGR03864    9 faygkrralddvsltvakgefvaLLGpnGaGkstLfslltrLyeakegeikvaGldlrrapkeala.rlGvvfqqstlDldlsveqnlryhaaLh..Glsraeaeerieealarl..glaeraeekvreLnGGhrrrveiarallhePklLLlDeatvGLDiesraalveevrelvreeglsvLWathlvdeveaedrlvvlhkGkvlaqGaaaelaaeadaedleqaf 232 
                  ++ g  ++ldd+ l+va+ e + ++G  GaGks ++  l rL+e k+g+i++ G d+ r p + l+ rl ++ q++ l +  +++ nl  + +     l r+  +  ie+ +++   gl    ee+  +L+ G+r+ v + rall + ++L+lDeat+ +D+++ a +++++++    ++ +vL   h +d +  +dr+vv+ +G+v+ +G +  l+++++ + l++++
  MMETSP1137-20121227|7519_1 1329 YRPGLPNVLDDMYLDVAPCEKIGIVGRTGAGKSSVLVCLFRLVELKSGTIEIDGRDIARMPLKELRsRLSIIPQDPVLFT-GTLRYNLDPFNEFDdeHLWRTLGQCSIEAPMRQHpdGLDRPIEERGANLSMGQRQLVCMCRALLKNSRVLVLDEATASVDMDTDALIQRTLETEL--TQATVLTIAHRLDTIMGNDRVVVMANGRVAETGPPLVLREKEG-SRLKELW 1553
                  45577799*****************************************************9999747999999999965.69******9998752269999999999998877544899999**********************************************9999877..68899****************************9998877654.6677766 PP

>> TIGR00972  3a0107s01c2: phosphate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.1     4e-06   0.00024      16      47 ..     708     739 ..     702     758 .. 0.85
   2 !   42.7   0.0   1.5e-13   9.2e-12      79     228 ..     751     902 ..     742     914 .. 0.84
   3 !   65.0   0.0   2.2e-20   1.4e-18      15     227 ..    1335    1538 ..    1320    1551 .. 0.88

  Alignments for each domain:
  == domain 1    score: 18.3 bits;  conditional E-value: 4e-06
   TIGR00972  16 alkdvnleikknkvtaliGpsGcGkstllrsl 47 
                 +lkd++l++++ +++++ Gp GcGk+tll s+
  MMETSP1137-20121227|7519_1 708 TLKDITLNVPRGAIIGVCGPVGCGKTTLLSSI 739
                 79***************************987 PP

  == domain 2    score: 42.7 bits;  conditional E-value: 1.5e-13
   TIGR00972  79 elrkkvGmvfqkpnpfpmsiydnvayglrlkgikdkkeldeiveesLkkaalwdevkdklkksalsLsGGqqqrlciaralavePevlLlDePtsaLDpiateki.eeliqeLkkk..ytivivthnmqqaarvsdktaff.leGelveegete 228
                  +r ++    q+p   ++s+ dnv +g  + +    +++++ + e     al d   +++ + +l+LsGGq+ r+++ara   + +  LlD+  sa+D++  +++  + i+ L ++   t++ vth+ +  + + d+ +f+ ++G++  +g+++
  MMETSP1137-20121227|7519_1 751 VVRGEIAFCAQEPWIQNISLRDNVLFGRPMDEALYARVISACALE-XDLLALADGDATEIGERGLNLSGGQKARVALARACYARADTYLLDDVLSAVDAEVGQHLmTKCIAGLLREwgATVIFVTHHTHWLHMC-DQGVFMsAHGTIEKQGPPS 902
                 6788999999999999**************998888888876644.4568999**********************************************99887526789998877467********9887655.5555552788888888766 PP

  == domain 3    score: 65.0 bits;  conditional E-value: 2.2e-20
   TIGR00972   15 ealkdvnleikknkvtaliGpsGcGkstllrslnrlndlveevrieGkvllegkdiydkkldvvelrkkvGmvfqkpnpfpmsiydnvayglrlkgikdkkeldei.veesLkkaalwdevkdklkksalsLsGGqqqrlciaralavePevlLlDePtsaLDpiatekieeliqeLkkkytivivthnmqqaarvsdktaffleGelveeget 227 
                  ++l+d+ l++   + ++++G +G+Gks++l +l rl +l      +G++ ++g+di       +elr+++ ++ q p  f+ ++  n+    +  + +  ++l +  +e+ +++    d +   +++ + +Ls Gq+q +c+ ral  +  vl+lDe t+++D  + + i+ +++   ++ t++ + h ++  +   d+++++++G++ e+g++
  MMETSP1137-20121227|7519_1 1335 NVLDDMYLDVAPCEKIGIVGRTGAGKSSVLVCLFRLVELK-----SGTIEIDGRDIARM--PLKELRSRLSIIPQDPVLFTGTLRYNLDPFNEFDDEHLWRTLGQCsIEAPMRQ--HPDGLDRPIEERGANLSMGQRQLVCMCRALLKNSRVLVLDEATASVDMDTDALIQRTLETELTQATVLTIAHRLDT-IMGNDRVVVMANGRVAETGPP 1538
                  68999999**99999***********************99.....8**********865..8899********************9*998888887777777766514444554..47999999**************************************************9999999*********86.5679*************9986 PP

>> TIGR03265  PhnT2: putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.5   0.1   3.8e-24   2.3e-22      18     221 ..     707     903 ..     700     910 .. 0.83
   2 !   48.0   1.5   3.7e-15   2.3e-13      18     221 ..    1335    1540 ..    1321    1549 .. 0.78

  Alignments for each domain:
  == domain 1    score: 77.5 bits;  conditional E-value: 3.8e-24
   TIGR03265  18 talkdislsvkkgelvclLGPsGCGkttLLriiaGLekqdaGaillggrditrlppqkrdyGivfqsYaLfPnltvaeniayGLknkklkreevaerveelLelvglsgsee....kyPgqlsGGqqqrvaLaralalsPglLLLDePlsaLDakvrekLree.lkklqrklgvttimvthdqeealslaDrivvmn.kgkieqvgtPee 221
                 ++lkdi l+v +g ++ + GP GCGkttLL  i G   + aG+ ++ g+ i+  + +               n+ +++n+ +G    +   ++v +  +   +l+ l + +          lsGGq+ rvaLara   + +  LLD+ lsa+Da v ++L +  +  l r+ g t i vth     l ++D+ v m  +g+ie+ g P+ 
  MMETSP1137-20121227|7519_1 707 STLKDITLNVPRGAIIGVCGPVGCGKTTLLSSILGDVPRVAGRAVVRGE-IAFCAQEP-----------WIQNISLRDNVLFGRPMDEALYARVISACALEXDLLALADGDAteigERGLNLSGGQKARVALARACYARADTYLLDDVLSAVDAEVGQHLMTKcIAGLLREWGATVIFVTHHT-HWLHMCDQGVFMSaHGTIEKQGPPSS 903
                 679********************************99999999988885.44444332...........3468888999999988888777888777777777777776554111134558**************************************98653899**************86.58******9999649*******9975 PP

  == domain 2    score: 48.0 bits;  conditional E-value: 3.7e-15
   TIGR03265   18 talkdislsvkkgelvclLGPsGCGkttLLriiaGLekqdaGaillggrditrlppqk.r.dyGivfqsYaLfPnltvaenia..yGLknkklkreevaerveelL..elvglsgseekyPgqlsGGqqqrvaLaralalsPglLLLDePlsaLDakvrekLreelkklqrklgvttim.vthdqeealslaDrivvmnkgkieqvgtPee 221 
                  ++l+d+ l+v+  e + ++G  G Gk+++L ++  L + ++G+i ++grdi+r+p ++ r    i+ q  +Lf   t++ n++    + +++l r+  +  +e  +  +  gl+   e   + ls Gq+q v + ral     +L+LDe  +++D    + ++   ++l  +l  +t++ ++h   + ++  Dr+vvm +g++  +g P  
  MMETSP1137-20121227|7519_1 1335 NVLDDMYLDVAPCEKIGIVGRTGAGKSSVLVCLFRLVELKSGTIEIDGRDIARMPLKElRsRLSIIPQDPVLFTG-TLRYNLDpfNEFDDEHLWRTLGQCSIEAPMrqHPDGLDRPIEERGANLSMGQRQLVCMCRALLKNSRVLVLDEATASVDMDTDALIQ---RTLETELTQATVLtIAHRL-DTIMGNDRVVVMANGRVAETGPPLV 1540
                  6899**************************************************9874342689*********75.677777532234445544544444444433113347888888889*******************************99977665554...4555566555555155655.566679***************9975 PP

>> TIGR02315  ABC_phnC: phosphonate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.0   1.2e-06   7.4e-05      16      54 ..     707     745 ..     703     776 .. 0.84
   2 !   29.1   0.0   2.1e-09   1.3e-07      91     208 ..     765     879 ..     745     905 .. 0.74
   3 !   70.6   0.0   4.7e-22   2.9e-20       3     236 ..    1321    1544 ..    1319    1551 .. 0.80

  Alignments for each domain:
  == domain 1    score: 20.1 bits;  conditional E-value: 1.2e-06
   TIGR02315  16 qalknvnleikkGelvaviGlsGaGkstllrsinrlvei 54 
                 ++lk++ l++ +G +++v G+ G Gk+tll si + v  
  MMETSP1137-20121227|7519_1 707 STLKDITLNVPRGAIIGVCGPVGCGKTTLLSSILGDVPR 745
                 579***************************999665555 PP

  == domain 2    score: 29.1 bits;  conditional E-value: 2.1e-09
   TIGR02315  91 ierltvlenvLsgrlgakstlksllglfseedkekAlelLervglaelaakradqLsGGqqqRvaiaRalaqqpklilaDEPiasLDpksskqvmd.llkrinkekgitvivnlHqvdl 208
                 i++ +  +nvL gr   +   + +++    e    Al+  +  ++     +r  +LsGGq+ Rva+aRa   +++  l D+ ++++D +  +++m   +  + +e g tvi   H+ + 
  MMETSP1137-20121227|7519_1 765 IQNISLRDNVLFGRPMDEALYARVISACALEXDLLALADGDATEI----GERGLNLSGGQKARVALARACYARADTYLLDDVLSAVDAEVGQHLMTkCIAGLLREWGATVIFVTHHTHW 879
                 555666666666666666666555555555555555555444444....457889*************************************999626889**********99998765 PP

  == domain 3    score: 70.6 bits;  conditional E-value: 4.7e-22
   TIGR02315    3 evenlskvypng.kqalknvnleikkGelvaviGlsGaGkstllrsinrlveissgsillegkevtklkkkelrklrkkigmifqeynlierltvlenvLsgr..lgakstlksllglfseedkekAlelLervglaelaakradqLsGGqqqRvaiaRalaqqpklilaDEPiasLDpksskqvmdllkrinkekgitvivnlHqvdlakkyadrivglkageivfdgasseldde 236 
                  +++ ++  y  g  ++l+++ l++ + e ++++G+ GaGks +l ++ rlve +sg+i+++g++++++    l++lr+++++i q+  l +    l+  L ++  +  ++ +++l +   e     A    +  gl+   ++r  +Ls Gq+q v ++Ral++++++++ DE +as+D  +   + ++l +  + ++ tv+   H++d  +   dr+v +++g++   g++  l ++
  MMETSP1137-20121227|7519_1 1321 KFTAVTMCYRPGlPNVLDDMYLDVAPCEKIGIVGRTGAGKSSVLVCLFRLVELKSGTIEIDGRDIARM---PLKELRSRLSIIPQDPVLFTG--TLRYNLDPFneFDDEHLWRTLGQCSIE-----APMRQHPDGLDRPIEERGANLSMGQRQLVCMCRALLKNSRVLVLDEATASVDMDTDALIQRTLET--ELTQATVLTIAHRLDTIMG-NDRVVVMANGRVAETGPPLVLREK 1544
                  56666666654415899************************************************966...6777889*******9877654..456556554115556666644444333.....333345557888999****************************************9999999975..55667888888****9886.79*********9988888777665 PP

>> TIGR02982  heterocyst_DevA: ABC exporter ATP-binding subunit, DevA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.7   0.0     7e-17   4.3e-15      19     215 ..     707     890 ..     691     896 .. 0.81
   2 !   56.0   0.0   1.4e-17   8.7e-16      19     219 ..    1335    1532 ..    1329    1533 .. 0.87

  Alignments for each domain:
  == domain 1    score: 53.7 bits;  conditional E-value: 7e-17
   TIGR02982  19 qvlfdinleiepgeiviltGpsGsGkttlltligglrsvqeGelkvlgkelkgasekelvqvrrkiGyifqahnllesltaeqnvrmalelkeklsakeakakaeel.leavglee..rldykpedlsgGqkqrvaiaralvarPklvladePtaaldkksgrevve.llqklareqgttillvthdnrildvadrivkme 215
                   l+di l++  g i+ + Gp G+Gkttll+ i g       ++        ++    +  vr +i +  q+   ++ +  ++nv ++  + e+l a+  +a a e  l a+  ++  ++  +  +lsgGqk rva+ara  ar +  l d+  +a+d++ g+++++  +  l re g+t+++vth +  l ++d+ v m 
  MMETSP1137-20121227|7519_1 707 STLKDITLNVPRGAIIGVCGPVGCGKTTLLSSILG-------DV-------PRVA--GRAVVRGEIAFCAQEP-WIQNISLRDNVLFGRPMDEALYARVISACALEXdLLALADGDatEIGERGLNLSGGQKARVALARACYARADTYLLDDVLSAVDAEVGQHLMTkCIAGLLREWGATVIFVTHHTHWLHMCDQGVFMS 890
                 5799**************************97643.......22.......2222..3456899999999875.567889999999999999998887776666543133444344457888999**************************************987527999***********************988875 PP

  == domain 2    score: 56.0 bits;  conditional E-value: 1.4e-17
   TIGR02982   19 qvlfdinleiepgeiviltGpsGsGkttlltligglrsvqeGelkvlgkelkgasekelvqvrrkiGyifqahnllesltaeqnvrmalelkeklsakeakakaeel.lea..vgleerldykpedlsgGqkqrvaiaralvarPklvladePtaaldkksgrevvellqklareqgttillvthdnrildvadrivkmedGkl 219 
                  +vl d+ l+++p e + + G +G+Gk  +l  +  l ++++G++++ g+++ +++   l+++r ++ +i q   l++  t + n+    e+ ++   ++  + + e  +++   gl+  ++ + ++ls Gq+q v + ral ++ ++++ de ta++d ++   +   l++      +t+l ++h    +   dr+v m +G++
  MMETSP1137-20121227|7519_1 1335 NVLDDMYLDVAPCEKIGIVGRTGAGKSSVLVCLFRLVELKSGTIEIDGRDIARMP---LKELRSRLSIIPQDPVLFTG-TLRYNLDPFNEFDDEHLWRTLGQCSIEApMRQhpDGLDRPIEERGANLSMGQRQLVCMCRALLKNSRVLVLDEATASVDMDTDALIQRTLETEL--TQATVLTIAHRLDTIMGNDRVVVMANGRV 1532
                  699*********************************************9987765...7789*********9999875.99**********999877777666654313331269*********************************************9988877776544..457899999988777789*********97 PP

>> TIGR03258  PhnT: 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.6   0.2   2.2e-19   1.4e-17      23     226 ..     708     903 ..     702     917 .. 0.76
   2 !   55.2   0.6     2e-17   1.2e-15      21     229 ..    1334    1543 ..    1316    1551 .. 0.80

  Alignments for each domain:
  == domain 1    score: 61.6 bits;  conditional E-value: 2.2e-19
   TIGR03258  23 vlddlsleieaGellallGksGsGkttllravaGfvkadGGrllvad.rdlthlppykrnlallvqnyalfphlkveenvafGlrarkqskaliaervadalklvqlsdaaa....rlpaqlsGGqqqrvalaralvvrpdvllldeplsaldaql.rasvveelkalhrelpeltvlyvthdrdealvladkillmk.eGslialGetra 226
                  l+d++l++  G ++ + G+ G+Gkttll  + G v    Gr +v +        p+ +n+              + +nv fG        a +    a    l+ l+d  a    +   +lsGGq+ rvalara   r d  lld+ lsa+da++ ++ + + ++ l re    tv++vth  ++ l + d+  +m  +G++ ++G + +
  MMETSP1137-20121227|7519_1 708 TLKDITLNVPRGAIIGVCGPVGCGKTTLLSSILGDVPRVAGRAVVRGeIAFCAQEPWIQNI-------------SLRDNVLFGRPMDEALYARVISACALEXDLLALADGDAteigERGLNLSGGQKARVALARACYARADTYLLDDVLSAVDAEVgQHLMTKCIAGLLREWG-ATVIFVTHH-THWLHMCDQGVFMSaHGTIEKQGPPSS 903
                 69**********************************8888887775404555556664443.............44788888855444444444444444445666666433111134568***********************************44667888999999975.69******6.789999999888852677777777665 PP

  == domain 2    score: 55.2 bits;  conditional E-value: 2e-17
   TIGR03258   21 rvvlddlsleieaGellallGksGsGkttllravaGfvkadGGrllvadrdlthlppy..krnlallvqnyalfphlkveenvafG.....lrarkqskaliaervadalklvqlsdaaarlpaqlsGGqqqrvalaralvvrpdvllldeplsaldaqlrasvveelkalhrelpeltvlyvthdrdealvladkillmkeGslialGetralyd 229 
                    vldd+ l++ + e + ++G++G+Gk+++l  +  +v+ + G++ + +rd++ +p    +  l+++ q+  lf     ++   f         r   +  i+  + +     +l    ++  a+ls Gq+q v + ral  + +vl+lde  +++d +  a ++    +l  el + tvl ++h r ++++  d++ +m +G++++ G +  l +
  MMETSP1137-20121227|7519_1 1334 PNVLDDMYLDVAPCEKIGIVGRTGAGKSSVLVCLFRLVELKSGTIEIDGRDIARMPLKelRSRLSIIPQDPVLFTGTLRYNLDPFNefddeHLWRTLGQCSIEAPMRQH--PDGLDRPIEERGANLSMGQRQLVCMCRALLKNSRVLVLDEATASVDMDTDALIQR---TLETELTQATVLTIAH-RLDTIMGNDRVVVMANGRVAETGPPLVLRE 1543
                  469****************************************************97522568***********86443333344310000333444444554444443..3477777888999**********************************99998875...6789***********9.6778999****************9877766 PP

>> TIGR00968  3a0106s01: sulfate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.2   0.0   3.6e-19   2.2e-17      15     216 ..     708     902 ..     702     910 .. 0.82
   2 !   51.6   0.2   3.1e-16   1.9e-14      13     216 ..    1334    1539 ..    1324    1549 .. 0.82

  Alignments for each domain:
  == domain 1    score: 61.2 bits;  conditional E-value: 3.6e-19
   TIGR00968  15 alddvdlevktGslvallGpsGsGkstllrviaGlekpdsGrilleGrdvtrvkvrdreiGfvfqhyalfkhltvrdniafGleirkkdkakikakv...eellelvq..leklgdrypsqlsGGqrqrvalaralavepqvllldepfgaldakvrkelr.awlrklhdevkvttvfvthdqeealevadrivvle.kGkieqvgsae 216
                 +l+d+ l+v+ G ++++ Gp G Gk+tll  i G   + +Gr +++G           ei f  q+   ++ +++rdn+ fG  +     a++        +ll l +   +++g+r   +lsGGq+ rvalara     +  lld+ ++a+da+v ++l  + +  l  e   t +fvth  +  l++ d+ v ++ +G ie+ g ++
  MMETSP1137-20121227|7519_1 708 TLKDITLNVPRGAIIGVCGPVGCGKTTLLSSILGDVPRVAGRAVVRG-----------EIAFCAQEP-WIQNISLRDNVLFGRPMDEALYARVISACaleXDLLALADgdATEIGERG-LNLSGGQKARVALARACYARADTYLLDDVLSAVDAEVGQHLMtKCIAGLLREWGATVIFVTHHTH-WLHMCDQGVFMSaHGTIEKQGPPS 902
                 79*******************************97777777766666...........689999985.5789**********999977666655444111567777652245677775.57************************************9986257899**************876.6777777777653899*9988776 PP

  == domain 2    score: 51.6 bits;  conditional E-value: 3.1e-16
   TIGR00968   13 fqalddvdlevktGslvallGpsGsGkstllrviaGlekpdsGrilleGrdvtrvkvrd..reiGfvfqhyalfkhltvrdniafGleirkkdkaki..kakveellel..vqleklgdrypsqlsGGqrqrvalaralavepqvllldepfgaldakvrkelrawlrklhdevkvttvfvthdqeealevadrivvlekGkieqvgsae 216 
                   ++ldd+ l+v   + ++++G +G+Gks++l  +  l + +sG+i ++Grd++r+ +++   ++ ++ q+  lf   t+r n+    e   ++  ++  +  +e  ++    +l++  +   ++ls Gqrq v + ral  + +vl+lde  +++d      +    r l  e+  +tv+    + +++   dr+vv+ +G++ + g + 
  MMETSP1137-20121227|7519_1 1334 PNVLDDMYLDVAPCEKIGIVGRTGAGKSSVLVCLFRLVELKSGTIEIDGRDIARMPLKElrSRLSIIPQDPVLFTG-TLRYNLDPFNEFDDEHLWRTlgQCSIEAPMRQhpDGLDRPIEERGANLSMGQRQLVCMCRALLKNSRVLVLDEATASVDMDTDALI---QRTLETELTQATVLTIAHRLDTIMGNDRVVVMANGRVAETGPPL 1539
                  5799***************************************************9986325689999******86.8999997666666444433301333444333211467777788899*******************************999876544...488999**999999888888888899***********9998775 PP

>> TIGR03410  urea_trans_UrtE: urea ABC transporter, ATP-binding protein UrtE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.0   0.0   6.7e-07   4.1e-05      15      62 ..     708     755 ..     702     764 .. 0.93
   2 !   21.9   0.0   3.5e-07   2.2e-05     128     215 ..     812     900 ..     804     910 .. 0.90
   3 !   68.0   0.0   2.8e-21   1.7e-19      11     215 ..    1332    1537 ..    1320    1548 .. 0.86

  Alignments for each domain:
  == domain 1    score: 21.0 bits;  conditional E-value: 6.7e-07
   TIGR03410  15 vlrdvslevekgevvavlGrngvGkttllkalvgllkvksGeielege 62 
                  l+d++l+v++g ++ v G  g Gkttll +++g +++ +G+  ++ge
  MMETSP1137-20121227|7519_1 708 TLKDITLNVPRGAIIGVCGPVGCGKTTLLSSILGDVPRVAGRAVVRGE 755
                 699**************************************9998886 PP

  == domain 2    score: 21.9 bits;  conditional E-value: 3.5e-07
   TIGR03410 128 rgGdLsGGqqqqlaiaRaLvtePklllLDePteGiqPsiike.iekvikelakekdlaillveqvldfaleladrylvlerGevvaege 215
                 rg +LsGGq+  +a+aRa  ++    lLD+    +   + ++ + k i  l +e + +++ v ++ ++   + + +++  +G++ ++g 
  MMETSP1137-20121227|7519_1 812 RGLNLSGGQKARVALARACYARADTYLLDDVLSAVDAEVGQHlMTKCIAGLLREWGATVIFVTHHTHWLHMCDQGVFMSAHGTIEKQGP 900
                 7889***********************************98735799********************9998888888888999988875 PP

  == domain 3    score: 68.0 bits;  conditional E-value: 2.8e-21
   TIGR03410   11 gesevlrdvslevekgevvavlGrngvGkttllkalvgllkvksGeielegeditklkpeervkaGiayvpqGreifpkltveenlelglealkkk......ekkipeeiyelFPvlkemlkRrgGdLsGGqqqqlaiaRaLvtePklllLDePteGiqPsiikeiekvikelakekdlaillveqvldfaleladrylvlerGevvaege 215 
                  g  +vl d+ l+v+  e + ++Gr g+Gk+++l +l  l++ ksG+ie++g+di +++  +  ++ ++ +pq   +f+  t + nl    e  +++      + +i++ + +    l+   + rg +Ls Gq+q + + RaL+++ ++l+LDe t  +     + i++++++  + ++ ++l + + ld  +   dr++v+ +G+v ++g 
  MMETSP1137-20121227|7519_1 1332 GLPNVLDDMYLDVAPCEKIGIVGRTGAGKSSVLVCLFRLVELKSGTIEIDGRDIARMP-LKELRSRLSIIPQDPVLFTG-TLRYNLDPFNEFDDEHlwrtlgQCSIEAPMRQHPDGLDRPIEERGANLSMGQRQLVCMCRALLKNSRVLVLDEATASVDMDTDALIQRTLET--ELTQATVLTIAHRLDTIMG-NDRVVVMANGRVAETGP 1537
                  45689*************************************************9985.6678999******9998875.9999**98777766656556645556666666656799999*************************************99999999999985..44568999999****9987.9***********99875 PP

>> TIGR02142  modC_ABC: molybdate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.9   0.0   0.00033      0.02      15      64 ..     711     760 ..     702     772 .. 0.88
   2 !   32.2   0.0   2.3e-10   1.4e-08     130     222 ..     814     907 ..     767     931 .. 0.79
   3 !   62.6   0.0   1.4e-19   8.3e-18      18     216 ..    1342    1538 ..    1332    1551 .. 0.81

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 0.00033
   TIGR02142  15 dvdlelpgkgvtalFGrsGsGktslirliaGLtrpdegeivldgevlqds 64 
                 d+ l++p   ++++ G  G+Gkt+l+  i G +   +g+ v+ ge+ + +
  MMETSP1137-20121227|7519_1 711 DITLNVPRGAIIGVCGPVGCGKTTLLSSILGDVPRVAGRAVVRGEIAFCA 760
                 7889999999***********************999****9999987655 PP

  == domain 2    score: 32.2 bits;  conditional E-value: 2.3e-10
   TIGR02142 130 gkLsGGekqRvaigRAlLssPeLLlmDePLaaLDekrkkeilP.yLerlsaelkiPilyvsHsldevarladrvvvl.edGrvkaagkleevlas 222
                  +LsGG k Rva++RA  ++ +  l+D+ L+a+D +  ++++   +  l +e    +++v H+ +  +++ d+ v +  +G ++ +g++  +   
  MMETSP1137-20121227|7519_1 814 LNLSGGQKARVALARACYARADTYLLDDVLSAVDAEVGQHLMTkCIAGLLREWGATVIFVTHHTHW-LHMCDQGVFMsAHGTIEKQGPPSSLGLP 907
                 57***********************************99999637899**************9775.5677776655168******999887543 PP

  == domain 3    score: 62.6 bits;  conditional E-value: 1.4e-19
   TIGR02142   18 lelpgkgvtalFGrsGsGktslirliaGLtrpdegeivldgevlqdsrkkiilppekRrvgyvFqeArLFpHlsvrenLrYGlkraraee.r...riseekvi..elLgiehLleRlpgkLsGGekqRvaigRAlLssPeLLlmDePLaaLDekrkkeilPyLerlsaelkiPilyvsHsldevarladrvvvledGrvkaagkl 216 
                  l++   + +++ Gr G+Gk+s++ ++  L+ +++g i++dg+ ++    ++ l   + r++++ q+  LF+  + r nL    +  + +  r   + s e+ +  +  g++  +e + ++Ls G +q v + RAlL + ++L++De  a++D+   + i   Le   + ++  +l ++H ld +    drvvv+ +Grv+ +g++
  MMETSP1137-20121227|7519_1 1342 LDVAPCEKIGIVGRTGAGKSSVLVCLFRLVELKSGTIEIDGRDIA----RMPLKELRSRLSIIPQDPVLFTG-TLRYNLDPFNEFDDEHLwRtlgQCSIEAPMrqHPDGLDRPIEERGANLSMGQRQLVCMCRALLKNSRVLVLDEATASVDMDTDALIQRTLET--ELTQATVLTIAHRLDTIMG-NDRVVVMANGRVAETGPP 1538
                  556666889********************************9764....6889999**************96.789999744433333321200033333333004469999999999************************************99998776663..44567899*******9976.8************99986 PP

>> TIGR01166  cbiO: cobalt ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.8   0.0   1.9e-15   1.2e-13       5     186 ..     706     876 ..     703     879 .. 0.85
   2 !   50.6   0.1   5.5e-16   3.3e-14       5     178 ..    1334    1507 ..    1330    1518 .. 0.76

  Alignments for each domain:
  == domain 1    score: 48.8 bits;  conditional E-value: 1.9e-15
   TIGR01166   5 aevlkglnlavergevlallGanGaGkstlllhlnGllrPksGkvlldGeeldysrkg.llelrkkvalvlqdpddqlfaadvdedvafgplnlGlseaeverrvrealaavdisgleerpthllsgGekkrvaiagavalrpdvllldePtagldpa.Gaeqlleilrk.lreeGktvvisthd 186
                 ++ lk++ l+v rg  +++ G+ G+Gk+tll+ + G +   +G+ ++ Ge     ++  + ++  + ++++  p d  ++a+v +  a+    l l + +++             ++ er    lsgG+k rva+a a   r+d  lld+  + +d++ G++ +++ + + lre G tv++ th 
  MMETSP1137-20121227|7519_1 706 PSTLKDITLNVPRGAIIGVCGPVGCGKTTLLSSILGDVPRVAGRAVVRGEIAFCAQEPwIQNISLRDNVLFGRPMDEALYARVISACALEXDLLALADGDAT-------------EIGERGL-NLSGGQKARVALARACYARADTYLLDDVLSAVDAEvGQHLMTKCIAGlLREWGATVIFVTHH 876
                 678************************************9*********86666665524556667788999***********9999988777766665544.............4444443.59*******************************8659999999999835889*********6 PP

  == domain 2    score: 50.6 bits;  conditional E-value: 5.5e-16
   TIGR01166    5 aevlkglnlavergevlallGanGaGkstlllhlnGllrPksGkvlldGeeldysrkgllelrkkvalvlqdpddqlfaadvdedva....fgplnl..GlseaeverrvrealaavdisgleerpthllsgGekkrvaiagavalrpdvllldePtagldpaGaeqlleilrklreeGk 178 
                  ++vl+++ l+v   e+++++G+ GaGks +l +l  l+  ksG++ +dG+++   r  l elr +++++ qdp   lf+ ++  ++     f    l   l +  +e+ +r+  + +d     e     ls G+++ v +  a+  +++vl+lde ta++d +    + ++l+    + +
  MMETSP1137-20121227|7519_1 1334 PNVLDDMYLDVAPCEKIGIVGRTGAGKSSVLVCLFRLVELKSGTIEIDGRDI--ARMPLKELRSRLSIIPQDP--VLFTGTLRYNLDpfneFDDEHLwrTLGQCSIEAPMRQHPDGLD--RPIEERGANLSMGQRQLVCMCRALLKNSRVLVLDEATASVDMDTDALIQRTLETELTQAT 1507
                  79************************************************88..599**************99..5899988876531111332222112333334444444333333..223344568***********************************9999999986444443 PP

>> TIGR02673  FtsE: cell division ATP-binding protein FtsE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.0   9.9e-06   0.00061      16      64 ..     707     755 ..     701     775 .. 0.90
   2 !   23.8   0.0     1e-07   6.4e-06     136     202 ..     814     882 ..     802     893 .. 0.87
   3 !   61.2   0.0   3.8e-19   2.4e-17       2     202 ..    1320    1520 ..    1319    1531 .. 0.83

  Alignments for each domain:
  == domain 1    score: 17.4 bits;  conditional E-value: 9.9e-06
   TIGR02673  16 eaLkdvslkiekgeflfltGasGaGkttllklllgaekpsrGevevage 64 
                 ++Lkd++l++ +g ++ + G+ G Gkttll  +lg     +G+  v ge
  MMETSP1137-20121227|7519_1 707 STLKDITLNVPRGAIIGVCGPVGCGKTTLLSSILGDVPRVAGRAVVRGE 755
                 689********************************99999999999886 PP

  == domain 2    score: 23.8 bits;  conditional E-value: 1e-07
   TIGR02673 136 eelsgGeqqRvaiaRaivnkPelllaDePtGnlDdelserild..llkelnkrGttvivathdeelver 202
                  +lsgG + Rva+aRa   + +  l D+    +D+e+ +++++  +   l + G+tvi++th ++ ++ 
  MMETSP1137-20121227|7519_1 814 LNLSGGQKARVALARACYARADTYLLDDVLSAVDAEVGQHLMTkcIAGLLREWGATVIFVTHHTHWLHM 882
                 579***************************************74355567899*********9987665 PP

  == domain 3    score: 61.2 bits;  conditional E-value: 3.8e-19
   TIGR02673    2 ielekvskeyaag.veaLkdvslkiekgeflfltGasGaGkttllklllgaekpsrGevevagedvarlrerelpllRrkigvvfqDfkllkdrtvlenvalalevrgkk..eeeiqkrveevlelv..gledkakalpeelsgGeqqRvaiaRaivnkPelllaDePtGnlDdelserildllkelnkrGttvivathdeelver 202 
                  i+++ v++ y  g  ++L+d+ l + + e + ++G+ GaGk+++l  l+   + ++G++e++g+d+ar+  +    lR +++++ qD  l+ + t   n+    e + ++  ++  q  +e+ +++   gl+  +++   +ls G +q v + Ra++++ ++l+ De t  +D ++ + i + l++  +  +tv+  +h  + +  
  MMETSP1137-20121227|7519_1 1320 IKFTAVTMCYRPGlPNVLDDMYLDVAPCEKIGIVGRTGAGKSSVLVCLFRLVELKSGTIEIDGRDIARMPLK---ELRSRLSIIPQDPVLF-TGTLRYNLDPFNEFDDEHlwRTLGQCSIEAPMRQHpdGLDRPIEERGANLSMGQRQLVCMCRALLKNSRVLVLDEATASVDMDTDALIQRTLETELT-QATVLTIAHRLDTIMG 1520
                  7899******9651689***************************************************9855...69**********8666.56777787755555544311556677788888775559***********************************************999999986555.4688888888776644 PP

>> TIGR01186  proV: glycine betaine/L-proline transport ATP binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.4   0.0   0.00045     0.028       8      54 ..     708     754 ..     702     765 .. 0.83
   2 !   28.7   0.0   2.4e-09   1.4e-07     129     215 ..     815     902 ..     809     936 .. 0.83
   3 !   62.1   0.2   1.7e-19   1.1e-17       7     214 ..    1335    1538 ..    1330    1544 .. 0.83

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 0.00045
   TIGR01186   8 gvndvdleieeGeiiviiGlsGsGkstlvrllnrliePtaGkilidG 54 
                 +++d+ l++  G ii + G+ G+Gk+tl+  +   +   aG+  + G
  MMETSP1137-20121227|7519_1 708 TLKDITLNVPRGAIIGVCGPVGCGKTTLLSSILGDVPRVAGRAVVRG 754
                 679*************************9877666666666666665 PP

  == domain 2    score: 28.7 bits;  conditional E-value: 2.4e-09
   TIGR01186 129 elsGGmqqrvGlaralaaePdlllmdeafsaldPlirde.lqdelvklqkklqktivfithdldealrlgdrivilka.GeivqvGtPd 215
                 +lsGG++ rv lara  a  d  l+d+ +sa+d  + ++ + + +  l ++   t++f+th     l+++d+ v + a G i + G P 
  MMETSP1137-20121227|7519_1 815 NLSGGQKARVALARACYARADTYLLDDVLSAVDAEVGQHlMTKCIAGLLREWGATVIFVTHHT-HWLHMCDQGVFMSAhGTIEKQGPPS 902
                 69*******************************98876625677889**************86.5799999999987536666666665 PP

  == domain 3    score: 62.1 bits;  conditional E-value: 1.7e-19
   TIGR01186    7 lgvndvdleieeGeiiviiGlsGsGkstlvrllnrliePtaGkilidGediaeisdaelrevrrkkiamviqkialfPhmtildnislglellkideqer.kekalea.lkl..vdleeyedryPdelsGGmqqrvGlaralaaePdlllmdeafsaldPlirdelqdelvklqkklqktivfithdldealrlgdrivilkaGeivqvGtP 214 
                    ++d+ l+++  e i i+G +G+Gks+++  l rl+e  +G i idG dia +  +el    r +++++ q+  lf   t+  n++   e+ + +  +   + + ea +++   +l+   ++   +ls G++q v + ral  +  +l++dea +++d  +   +q  l    +  q t++ i+h ld  +   dr+v++ +G +   G P
  MMETSP1137-20121227|7519_1 1335 NVLDDMYLDVAPCEKIGIVGRTGAGKSSVLVCLFRLVELKSGTIEIDGRDIARMPLKEL----RSRLSIIPQDPVLFT-GTLRYNLDPFNEFDDEHLWRTlGQCSIEApMRQhpDGLDRPIEERGANLSMGQRQLVCMCRALLKNSRVLVLDEATASVDMDTDALIQRTLET--ELTQATVLTIAHRLDTIM-GNDRVVVMANGRVAETGPP 1538
                  5678899****************************************************....999*******99996.58888887666665433222212333333244422589999999999********************************98888878877653..456789*********877.58***********999977 PP

>> TIGR03005  ectoine_ehuA: ectoine/hydroxyectoine ABC transporter, ATP-binding protein EhuA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.0   0.0    0.0051      0.31      15      48 ..     708     741 ..     704     763 .. 0.78
   2 !   39.9   0.0   9.6e-13   5.8e-11     144     234 ..     813     904 ..     787     920 .. 0.86
   3 !   25.0   0.0   3.5e-08   2.1e-06      11      68 ..    1332    1389 ..    1320    1397 .. 0.87
   4 !   28.3   0.0   3.3e-09     2e-07     141     232 ..    1451    1539 ..    1443    1554 .. 0.81

  Alignments for each domain:
  == domain 1    score: 8.0 bits;  conditional E-value: 0.0051
   TIGR03005  15 vldglelevaaGekvaliGpsGsGkstilrilmt 48 
                  l+++ l+v +G  + + Gp G Gk+t+l  ++ 
  MMETSP1137-20121227|7519_1 708 TLKDITLNVPRGAIIGVCGPVGCGKTTLLSSILG 741
                 5889999*********************975544 PP

  == domain 2    score: 39.9 bits;  conditional E-value: 9.6e-13
   TIGR03005 144 paqlsGGqkqrvaiaralalrpkvllfdevtsaldpelveevl.nvlrrlasetdltmllvthemgfarefadrvlffdkGkiveeGkpdei 234
                   +lsGGqk rva+ara   r    l+d+v sa+d e+ + ++ + +  l  e   t+++vth+  + +   + v +  +G i ++G p  +
  MMETSP1137-20121227|7519_1 813 GLNLSGGQKARVALARACYARADTYLLDDVLSAVDAEVGQHLMtKCIAGLLREWGATVIFVTHHTHWLHMCDQGVFMSAHGTIEKQGPPSSL 904
                 5689*********************************99988735899*******************9988888888899*******99876 PP

  == domain 3    score: 25.0 bits;  conditional E-value: 3.5e-08
   TIGR03005   11 geltvldglelevaaGekvaliGpsGsGkstilrilmtletideGsikvegeqlyhmk 68  
                  g  +vld++ l+va+ ek+ ++G +G+Gks++l  l+ l +++ G+i+++g  +  m+
  MMETSP1137-20121227|7519_1 1332 GLPNVLDDMYLDVAPCEKIGIVGRTGAGKSSVLVCLFRLVELKSGTIEIDGRDIARMP 1389
                  45589**********************************************9988886 PP

  == domain 4    score: 28.3 bits;  conditional E-value: 3.3e-09
   TIGR03005  141 dalpaqlsGGqkqrvaiaralalrpkvllfdevtsaldpelveevlnvlrrlase.tdltmllvthemgfarefadrvlffdkGkiveeGkpd 232 
                  ++  a+ls Gq+q v + ral  + +vl++de+t+++d +     l + r l +e t+ t+l ++h++       drv+ + +G+++e G p 
  MMETSP1137-20121227|7519_1 1451 EERGANLSMGQRQLVCMCRALLKNSRVLVLDEATASVDMDTDA--L-IQRTLETElTQATVLTIAHRLDTIMG-NDRVVVMANGRVAETGPPL 1539
                  566789*******************************987533..2.4456655536789999****997765.8***************884 PP

>> TIGR01277  thiQ: thiamine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   0.0   0.00013    0.0082      17      59 ..     712     754 ..     706     778 .. 0.83
   2 !   36.5   0.0   1.3e-11   7.9e-10     128     210 ..     815     898 ..     806     900 .. 0.85
   3 !   51.9   0.0   2.5e-16   1.5e-14      18     209 ..    1341    1534 ..    1333    1537 .. 0.85

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 0.00013
   TIGR01277  17 fdlsveaGervailGesGaGkstllnliaGflepasGeikvnd 59 
                   l+v +G ++ + G+ G Gk+tll+ i G +  + G   v +
  MMETSP1137-20121227|7519_1 712 ITLNVPRGAIIGVCGPVGCGKTTLLSSILGDVPRVAGRAVVRG 754
                 579***************************9999999877765 PP

  == domain 2    score: 36.5 bits;  conditional E-value: 1.3e-11
   TIGR01277 128 elsGGqrqrvalarclvrekpillldepfsaldpklreemla.lvkkladekkltlllvthslsdaaaiasqvvvvedGkikvl 210
                 +lsGGq+ rvalar        +lld+ +sa+d  + + +++  ++ l  e   t+++vth+ + +    + v + ++G i+++
  MMETSP1137-20121227|7519_1 815 NLSGGQKARVALARACYARADTYLLDDVLSAVDAEVGQHLMTkCIAGLLREWGATVIFVTHHTHWLHMCDQGVFMSAHGTIEKQ 898
                 69************777778899*************9986653799****************9888776666666678888765 PP

  == domain 3    score: 51.9 bits;  conditional E-value: 2.5e-16
   TIGR01277   18 dlsveaGervailGesGaGkstllnliaGflepasGeikvndkdhtrsapy..erpvsmlfqennlfahltvrqnig..lGlkpglklnavqkekvedvarqv..GiadylerlpeelsGGqrqrvalarclvrekpillldepfsaldpklreemlalvkkl..adekkltlllvthslsdaaaiasqvvvvedGkikv 209 
                   l v+  e++ i+G +GaGks++l  +  ++e  sG+i ++++d  r++    +  +s++ q+  lf+  t+r n+     ++      ++ +  +e+  rq   G++  +e    +ls Gqrq v + r l+++  +l+lde  +++d        al++++  ++  + t+l ++h+l+ ++   ++vvv+++G+++ 
  MMETSP1137-20121227|7519_1 1341 YLDVAPCEKIGIVGRTGAGKSSVLVCLFRLVELKSGTIEIDGRDIARMPLKelRSRLSIIPQDPVLFTG-TLRYNLDpfNEFDDEHLWRTLGQCSIEAPMRQHpdGLDRPIEERGANLSMGQRQLVCMCRALLKNSRVLVLDEATASVDMDT----DALIQRTleTELTQATVLTIAHRLDTIM-GNDRVVVMANGRVAE 1534
                  588999**************************************9998765115789**********85.899999732356666667889999999999885559****************************************999654....456655411455799*******997655.579*********986 PP

>> TIGR03873  F420-0_ABC_ATP: proposed F420-0 ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.8   2.1   1.3e-13   7.7e-12      17     224 ..     709     904 ..     701     912 .. 0.80
   2 !   20.3   0.0   9.6e-07   5.9e-05       6      83 ..    1326    1403 ..    1321    1406 .. 0.91
   3 !   39.1   0.3   1.7e-12   1.1e-10     137     222 ..    1456    1539 ..    1448    1556 .. 0.88

  Alignments for each domain:
  == domain 1    score: 42.8 bits;  conditional E-value: 1.3e-13
   TIGR03873  17 vddvdvtaPaGaltgllGPnGsGkstllrllaGllapdaGevdlagadlkalsrrararrvalveqdsdaevplsvrdvvalGriPhrslfaadsdeda.evvdralarvelssladrdlstlsGGerqrvhlaralaqePklllldePtnhldvsa.qlellalvrela.aegvtvvvalhdlnlaasvcdh.vvvldgGrvvaaGppaev 224
                 ++d+++++P Ga+ g+ GP G+Gk+tll+ + G +   aG+  + g             ++a   q+     ++s rd v++Gr    +l+a   ++ a e    ala+ +++++ +r l+ lsGG++ rv lara   +    lld+    +d +  q  + + +  l  + g+tv+   h  ++  ++cd+ v + ++G +   Gpp+++
  MMETSP1137-20121227|7519_1 709 LKDITLNVPRGAIIGVCGPVGCGKTTLLSSILGDVPRVAGRAVVRG-------------EIAFCAQEPW-IQNISLRDNVLFGRPMDEALYARVISACAlEXDLLALADGDATEIGERGLN-LSGGQKARVALARACYARADTYLLDDVLSAVDAEVgQHLMTKCIAGLLrEWGATVIFVTHH-THWLHMCDQgVFMSAHGTIEKQGPPSSL 904
                 789******************************9998888765544.............5899999865.579***********999999998754443144556789999*******996.9***************************999987524334445555551447777777776.6778888872555679********9875 PP

  == domain 2    score: 20.3 bits;  conditional E-value: 9.6e-07
   TIGR03873    6 rvsvraggrlivddvdvtaPaGaltgllGPnGsGkstllrllaGllapdaGevdlagadlkalsrrararrvalveqd 83  
                   + +r g   ++dd+ +++ + +  g++G  G+Gks +l  l  l++ + G+++++g d+  ++ ++   r++++ qd
  MMETSP1137-20121227|7519_1 1326 TMCYRPGLPNVLDDMYLDVAPCEKIGIVGRTGAGKSSVLVCLFRLVELKSGTIEIDGRDIARMPLKELRSRLSIIPQD 1403
                  56677788899*******999999****************************************99999999999887 PP

  == domain 3    score: 39.1 bits;  conditional E-value: 1.7e-12
   TIGR03873  137 tlsGGerqrvhlaralaqePklllldePtnhldvsaqlellalvrelaaegvtvvvalhdlnlaasvcdhvvvldgGrvvaaGppa 222 
                   ls G+rq v + ral ++ ++l+lde t  +d+ +   + + + +   +++tv+   h l+   +  d+vvv+++Grv+ +Gpp 
  MMETSP1137-20121227|7519_1 1456 NLSMGQRQLVCMCRALLKNSRVLVLDEATASVDMDTDALIQRTLETE-LTQATVLTIAHRLDTI-MGNDRVVVMANGRVAETGPPL 1539
                  69********************************9998888877766.699**********975.678***************995 PP

>> TIGR02769  nickel_nikE: nickel import ATP-binding protein NikE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.1   0.0   0.00034     0.021      25      72 ..     707     754 ..     697     761 .. 0.84
   2 !   29.8   0.0   1.4e-09   8.7e-08     132     233 ..     797     898 ..     775     921 .. 0.83
   3 !   57.0   0.4     7e-18   4.3e-16      23     232 ..    1333    1535 ..    1320    1541 .. 0.83

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 0.00034
   TIGR02769  25 avldnvslsleeGetvallGrsGaGkstlarlllGlekPakGevsfrG 72 
                 + l+++ l++ +G  +++ G  G+Gk+tl   +lG      G+   rG
  MMETSP1137-20121227|7519_1 707 STLKDITLNVPRGAIIGVCGPVGCGKTTLLSSILGDVPRVAGRAVVRG 754
                 5799*************************9999996655556555555 PP

  == domain 2    score: 29.8 bits;  conditional E-value: 1.4e-09
   TIGR02769 132 ellelvelrsevldklPrqlsGGqlqriniaralavePklivldeavsnldl.vlqasilellkklkqefGlaylfithdlrlvqkfaqrvlvldeGqiveei 233
                 +ll l + ++ ++  +  +lsGGq  r+++ara  ++    +ld+ +s +d  v q  + + +  l +e G +++f+th  +  + ++++ + +     +e++
  MMETSP1137-20121227|7519_1 797 DLLALADGDATEIGERGLNLSGGQKARVALARACYARADTYLLDDVLSAVDAeVGQHLMTKCIAGLLREWGATVIFVTHHTHWLH-MCDQGVFMSAHGTIEKQ 898
                 678888888888899999*********************************8356777888999****************98875.67777777666666665 PP

  == domain 3    score: 57.0 bits;  conditional E-value: 7e-18
   TIGR02769   23 rkavldnvslsleeGetvallGrsGaGkstlarlllGlekPakGevsfrGqdlakldrkqrkafrrdvqlvfqdsisavnprksvreiigePlrhlts..ldeserkariae.llelvelrsevldklPrqlsGGqlqriniaralavePklivldeavsnldlvlqasilellk.klkqefGlaylfithdlrlvqkfaqrvlvldeGqivee 232 
                    +vld++ l +   e ++++Gr+GaGks +   l  l + ++G++   G+d+a++     k +r  + ++ qd +       ++r  + +P++++ +  l ++  +  i++ + +  +  +  ++ + ++ls Gq q +++ ral  + +++vldea +++d+   a i + l+ +l q+   ++l i+h l  +    +rv+v+ +G++ e+
  MMETSP1137-20121227|7519_1 1333 LPNVLDDMYLDVAPCEKIGIVGRTGAGKSSVLVCLFRLVELKSGTIEIDGRDIARMP---LKELRSRLSIIPQDPVL---FTGTLRYNL-DPFNEFDDehLWRTLGQCSIEApMRQHPDGLDRPIEERGANLSMGQRQLVCMCRALLKNSRVLVLDEATASVDMDTDALIQRTLEtELTQA---TVLTIAHRLDTIMG-NDRVVVMANGRVAET 1535
                  568***************************************************997...5678889*******754...445666665.5777765422556666666655144555556667888999****************************************99986256654...5789*****99865.89**********997 PP

>> TIGR03608  L_ocin_972_ABC: putative bacteriocin export ABC transporter, lactococcin 972 group
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.0     4e-06   0.00024      13      47 ..     708     743 ..     700     764 .. 0.83
   2 !   27.2   0.0   8.4e-09   5.1e-07     134     204 ..     815     887 ..     806     889 .. 0.88
   3 !   52.9   0.0   1.1e-16   6.8e-15      12     204 ..    1335    1525 ..    1325    1527 .. 0.82

  Alignments for each domain:
  == domain 1    score: 18.4 bits;  conditional E-value: 4e-06
   TIGR03608  13 ilkklslkiekGelvaivGesGsGKstlLn.ilgll 47 
                  lk++ l++ +G ++ ++G  G+GK+tlL  ilg +
  MMETSP1137-20121227|7519_1 708 TLKDITLNVPRGAIIGVCGPVGCGKTTLLSsILGDV 743
                 699**************************6366655 PP

  == domain 2    score: 27.2 bits;  conditional E-value: 8.4e-09
   TIGR03608 134 elsgGekqRvalarillkeselilADEPtgsLDkknreevle.llke.lkeegktiiivtHdpevaekadrvi 204
                 +lsgG+k Rvalar+    ++  l D+  +++D++  +++++ ++   l+e g t+i+vtH ++  +++d+ +
  MMETSP1137-20121227|7519_1 815 NLSGGQKARVALARACYARADTYLLDDVLSAVDAEVGQHLMTkCIAGlLREWGATVIFVTHHTHWLHMCDQGV 887
                 79**********************************9999972344337889*****************9976 PP

  == domain 3    score: 52.9 bits;  conditional E-value: 1.1e-16
   TIGR03608   12 eilkklslkiekGelvaivGesGsGKstlLnilgllekkdsgkvilegkekaklkskkaskllreklgylFqnfaLlenetveenlelalklkkks..kkekekkkkevlekv..glekklkkkiyelsgGekqRvalarillkeselilADEPtgsLDkknreevlellkelkeegktiiivtHdpevaekadrvi 204 
                  ++l+++ l++   e + ivG+ G+GKs +L  l +l + +sg++ ++g++ a    +   k lr++l+ + q+  L  + t+++nl+   ++  ++  ++  +  ++  +++   gl++ ++++  +ls G++q v + r+llk+s++++ DE t+s+D+++ + + + l+       t++ + H        drv+
  MMETSP1137-20121227|7519_1 1335 NVLDDMYLDVAPCEKIGIVGRTGAGKSSVLVCLFRLVELKSGTIEIDGRDIA----RMPLKELRSRLSIIPQDPVLF-TGTLRYNLDPFNEFDDEHlwRTLGQCSIEAPMRQHpdGLDRPIEERGANLSMGQRQLVCMCRALLKNSRVLVLDEATASVDMDTDALIQRTLETELT-QATVLTIAHRLDTIMGNDRVV 1525
                  69************************************************43....445556799********9887.68******97555544331134444444444555344899999***************************************998888888776655.567777888887777777776 PP

>> TIGR01187  potA: polyamine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.9   0.0     2e-16   1.2e-14       3     186 ..     726     902 ..     724     909 .. 0.72
   2 !   11.9   0.0    0.0003     0.018       1      40 [.    1352    1391 ..    1352    1414 .. 0.84
   3 !   33.2   0.4   9.8e-11     6e-09      97     187 ..    1453    1540 ..    1444    1549 .. 0.83

  Alignments for each domain:
  == domain 1    score: 51.9 bits;  conditional E-value: 2e-16
   TIGR01187   3 GpsGsGkttlLrllaGleeldsGkilldgedvtevpaekrsvnvvfqsyaLfPhmtveenvafgLkmrkvpkaeikervkeaLelvql.....eefakrkpsqlsGGqrqrvalaravvkkPkiLLlDeplsaLDkkL.rdqmqlelkalqeklGitvvlvthDqeealtmsdriavlr.kGkiaqigepe 186
                 Gp G+GkttlL  + G     +G+ ++ ge ++  + ++  +    q       +++ +nv fg  m++   a + +      +l  l     +e+++r   +lsGGq+ rvalara   + +  LlD+ lsa+D ++ ++ m + +  l ++ G tv++vth     l m d+ + ++ +G i++ g p 
  MMETSP1137-20121227|7519_1 726 GPVGCGKTTLLSSILGDVPRVAGRAVVRGE-IAFCA-QEPWI----Q------NISLRDNVLFGRPMDEALYARVISACALEXDLLALadgdaTEIGER-GLNLSGGQKARVALARACYARADTYLLDDVLSAVDAEVgQHLMTKCIAGLLREWGATVIFVTHHT-HWLHMCDQGVFMSaHGTIEKQGPPS 902
                 888888888888888877667777766664.33333.22222....3......3466778888877777665555444433333344410010455554.568*********************************9934579999*****************75.6799***999997368998888775 PP

  == domain 2    score: 11.9 bits;  conditional E-value: 0.0003
   TIGR01187    1 lLGpsGsGkttlLrllaGleeldsGkilldgedvtevpae 40  
                  ++G +G+Gk+ +L  l  l el+sG i +dg d++++p +
  MMETSP1137-20121227|7519_1 1352 IVGRTGAGKSSVLVCLFRLVELKSGTIEIDGRDIARMPLK 1391
                  6799*******************************99964 PP

  == domain 3    score: 33.2 bits;  conditional E-value: 9.8e-11
   TIGR01187   97 kpsqlsGGqrqrvalaravvkkPkiLLlDeplsaLDkkLrdqmqlelkalqeklGitvvlvthDqeealtmsdriavlrkGkiaqigepee 187 
                  +  +ls Gqrq v + ra+ k+ ++L+lDe+ +++D      +q  l++   +   tv+ ++h + + +   dr++v+ +G++a  g p  
  MMETSP1137-20121227|7519_1 1453 RGANLSMGQRQLVCMCRALLKNSRVLVLDEATASVDMDTDALIQRTLETELTQ--ATVLTIAH-RLDTIMGNDRVVVMANGRVAETGPPLV 1540
                  6679****************************************877665444..35555666.55677789************9998765 PP

>> TIGR02314  ABC_MetN: D-methionine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0   1.2e-05   0.00074      20      51 ..     708     739 ..     700     758 .. 0.85
   2 !   29.6   0.0   1.2e-09   7.1e-08     139     223 ..     814     898 ..     795     916 .. 0.84
   3 !   50.6   0.6     5e-16   3.1e-14      20     223 ..    1336    1536 ..    1320    1539 .. 0.82

  Alignments for each domain:
  == domain 1    score: 16.4 bits;  conditional E-value: 1.2e-05
   TIGR02314  20 aldnvslfvpkgqifgvigasgagkstlircv 51 
                 +l++++l vp+g i+gv g  g gk+tl+  +
  MMETSP1137-20121227|7519_1 708 TLKDITLNVPRGAIIGVCGPVGCGKTTLLSSI 739
                 79**************************9765 PP

  == domain 2    score: 29.6 bits;  conditional E-value: 1.2e-09
   TIGR02314 139 snlsggqkqrvaiaralasepkvllcdeatsaldpattqsile.llkeinrrlgltillithemdvvkricdevavidkgeliekg 223
                  nlsggqk rva+ara  +     l d+  sa+d    q +++  +  + r+ g t++++th  + + ++cd+   ++    iek+
  MMETSP1137-20121227|7519_1 814 LNLSGGQKARVALARACYARADTYLLDDVLSAVDAEVGQHLMTkCIAGLLREWGATVIFVTHHTHWL-HMCDQGVFMSAHGTIEKQ 898
                 69***********************************999886268899*************99887.578887777666666654 PP

  == domain 3    score: 50.6 bits;  conditional E-value: 5e-16
   TIGR02314   20 aldnvslfvpkgqifgvigasgagkstlircvnllekptsgavivdgkdlttlsnaelvkarrqigmifqhfnllssrtvfgnvalplelentpkek.ikrkvte...llalvglsdkkdsypsnlsggqkqrvaiaralasepkvllcdeatsaldpattqsilellkeinrrlgltillithemdvvkricdevavidkgeliekg 223 
                   ld++ l v   + +g++g +gagks+++ c+  l +  sg++ +dg+d++++      + r ++ +i q   l++  t+  n+    e++++   + + +   e        gl    +   +nls gq+q v + ral  + +vl+ deat+++d  t   i   l       + t+l i+h +d +    d+v v+ +g++ e g
  MMETSP1137-20121227|7519_1 1336 VLDDMYLDVAPCEKIGIVGRTGAGKSSVLVCLFRLVELKSGTIEIDGRDIARMPLK---ELRSRLSIIPQDPVLFTG-TLRYNLDPFNEFDDEHLWRtLGQCSIEapmRQHPDGLDRPIEERGANLSMGQRQLVCMCRALLKNSRVLVLDEATASVDMDTDALIQRTLETE--LTQATVLTIAHRLDTIMG-NDRVVVMANGRVAETG 1536
                  699999***9999********************9999************9988655...558899999999877765.77778887778877654330333322311023446999999**************************************99988887666532..235799********9975.799********99876 PP

>> TIGR03771  anch_rpt_ABC: anchored repeat-type ABC transporter, ATP-binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.9   0.0   3.4e-17   2.1e-15       2     197 ..     715     902 ..     714     917 .. 0.84
   2 !   13.4   0.0   0.00016    0.0099       2      43 ..    1343    1384 ..    1342    1403 .. 0.88
   3 !   36.1   0.3   1.9e-11   1.2e-09     112     202 ..    1455    1544 ..    1442    1552 .. 0.83

  Alignments for each domain:
  == domain 1    score: 54.9 bits;  conditional E-value: 3.4e-17
   TIGR03771   2 svdkGellgllGpnGaGkttllrailglikvakGsvkvagkssrkgrreiGyvpqrhefawdfpidveqtvlsGragliGllrrpkkadfaava.dalervklteladrpvGelsGGqrqrvlvaralavkpslllldepftGldlps.qellvelfeel.agegtailmtthdlaeavatcdrvvlln..grvvadgapd 197
                 +v +G ++g+ Gp G Gkttll +ilg +++ +G+  v g        ei +  q     w   i++++ vl Gr     l+ r   a     +  al   + te+ +r + +lsGGq+ rv +ara   +    lld+ ++ +d    q l+++ +  l  + g +++ +th+ ++ +++cd+ v++   g++  +g p+
  MMETSP1137-20121227|7519_1 715 NVPRGAIIGVCGPVGCGKTTLLSSILGDVPRVAGRAVVRG--------EIAFCAQE---PWIQNISLRDNVLFGRPMDEALYARVISACALEXDlLALADGDATEIGERGL-NLSGGQKARVALARACYARADTYLLDDVLSAVDAEVgQHLMTKCIAGLlREWGATVIFVTHH-THWLHMCDQGVFMSahGTIEKQGPPS 902
                 6789**************************9999999999........69999997...6******************99999998886555442699999********98.7********************************98615566676766515669999****98.56799999877764224555555555 PP

  == domain 2    score: 13.4 bits;  conditional E-value: 0.00016
   TIGR03771    2 svdkGellgllGpnGaGkttllrailglikvakGsvkvagks 43  
                  +v + e +g++G  GaGk+++l +++ l++ + G+++++g+ 
  MMETSP1137-20121227|7519_1 1343 DVAPCEKIGIVGRTGAGKSSVLVCLFRLVELKSGTIEIDGRD 1384
                  5677899*********************************85 PP

  == domain 3    score: 36.1 bits;  conditional E-value: 1.9e-11
   TIGR03771  112 GelsGGqrqrvlvaralavkpslllldepftGldlpsqellvelf.eelagegtailmtthdlaeavatcdrvvllngrvvadgapdqlqda 202 
                   +ls Gqrq v + ral  + ++l+lde  + +d+ +  l+   + +el+  + ++l  +h l   +     vv+ ngrv  +g p  l++ 
  MMETSP1137-20121227|7519_1 1455 ANLSMGQRQLVCMCRALLKNSRVLVLDEATASVDMDTDALIQRTLeTELT--QATVLTIAHRLDTIMGNDRVVVMANGRVAETGPPLVLREK 1544
                  469*********************************99888766514555..4689999****9988877777888****999999888875 PP

>> TIGR01188  drrA: daunorubicin resistance ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.1   0.2   2.7e-07   1.7e-05       8      54 ..     708     754 ..     705     761 .. 0.91
   2 !   15.9   0.0   2.1e-05    0.0013     124     212 ..     815     905 ..     798     963 .. 0.83
   3 !   54.5   0.2   3.7e-17   2.3e-15       9     219 ..    1337    1549 ..    1334    1556 .. 0.87

  Alignments for each domain:
  == domain 1    score: 22.1 bits;  conditional E-value: 2.7e-07
   TIGR01188   8 AvdgvnlkveegevfglLGPnGAGKtttikmLttllkPdsGtarvaG 54 
                  +++++l+v++g ++g+ GP G GKtt+++ + + ++  +G+a+v G
  MMETSP1137-20121227|7519_1 708 TLKDITLNVPRGAIIGVCGPVGCGKTTLLSSILGDVPRVAGRAVVRG 754
                 5799************************9988888888999999988 PP

  == domain 2    score: 15.9 bits;  conditional E-value: 2.1e-05
   TIGR01188 124 tysgGmrrrlelaasliaqPevlfLDEPtiGLDprtrrai.wdlieelkke.gvtilltthyleeadkladrvaiidkGkiiaedtpeeLK 212
                 ++sgG++ r+ la++  a+ + + LD+  + +D++  +++  + i+ l +e g t++  th+ +   +  + v +  +G+i +++ p  L 
  MMETSP1137-20121227|7519_1 815 NLSGGQKARVALARACYARADTYLLDDVLSAVDAEVGQHLmTKCIAGLLREwGATVIFVTHHTHWLHMCDQGVFMSAHGTIEKQGPPSSLG 905
                 57********************************988776257899999998*********998887666668888999999999888764 PP

  == domain 3    score: 54.5 bits;  conditional E-value: 3.7e-17
   TIGR01188    9 vdgvnlkveegevfglLGPnGAGKtttikmLttllkPdsGtarvaGyDvvrepd.evRrsigvvpqkasvdedLtarenlellgelyg..lpkkeaeeraeellelv..elkeaadkkvktysgGmrrrlelaasliaqPevlfLDEPtiGLDprtrraiwdlieelkkegvtilltthyleeadkladrvaiidkGkiiaedtpeeLKervgkev 219 
                  +d++ l+v   e +g++G  GAGK+ ++  L  l++ +sGt  + G D+ r p  e+R +++++pq+  +    t r nl  + e+ +  l ++  +  +e  + +    l    +++  ++s G+r+ + + ++l+++ +vl LDE t  +D  t + i + +e    ++ t+l  +h l+ + +  drv ++ +G+++ ++ p  L+e+ g++ 
  MMETSP1137-20121227|7519_1 1337 LDDMYLDVAPCEKIGIVGRTGAGKSSVLVCLFRLVELKSGTIEIDGRDIARMPLkELRSRLSIIPQDPVLFTG-TLRYNLDPFNEFDDehLWRTLGQCSIEAPMRQHpdGLDRPIEERGANLSMGQRQLVCMCRALLKNSRVLVLDEATASVDMDTDALIQRTLETE-LTQATVLTIAHRLDTI-MGNDRVVVMANGRVAETGPPLVLREKEGSRL 1549
                  789999***********************************************659***********998865.8899********87224455566677777777533577777888889***************************************9999765.457899999***9876.679***************9999998877765 PP

>> TIGR00960  3a0501s02: type II secretory pathway family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   5.3e-05    0.0032      12      63 ..     702     753 ..     694     762 .. 0.84
   2 !   19.8   0.0   1.8e-06   0.00011     137     209 ..     814     888 ..     804     895 .. 0.85
   3 !   55.3   0.1   2.5e-17   1.5e-15       2     215 ..    1320    1531 ..    1319    1532 .. 0.84

  Alignments for each domain:
  == domain 1    score: 15.0 bits;  conditional E-value: 5.3e-05
   TIGR00960  12 kgaaelaldnvtvkiekGelvflvGhsGaGkstllklilgiekpsaGkirvs 63 
                 ++++  +l+++t+++++G ++ + G+ G+Gk+tll  ilg     aG+  v 
  MMETSP1137-20121227|7519_1 702 EASMPSTLKDITLNVPRGAIIGVCGPVGCGKTTLLSSILGDVPRVAGRAVVR 753
                 6777789*******************************99877777766655 PP

  == domain 2    score: 19.8 bits;  conditional E-value: 1.8e-06
   TIGR00960 137 vqlsgGeqqrvaiaravvnkPallladePtgnlddelsrdile..lleevnraGttvlvathdenlveskrkrvl 209
                  +lsgG++ rva+ara   +    l d+  + +d e+ ++++   +   +++ G tv+  th ++ ++   + v+
  MMETSP1137-20121227|7519_1 814 LNLSGGQKARVALARACYARADTYLLDDVLSAVDAEVGQHLMTkcIAGLLREWGATVIFVTHHTHWLHMCDQGVF 888
                 589**************************************974344567889**********998887776665 PP

  == domain 3    score: 55.3 bits;  conditional E-value: 2.5e-17
   TIGR00960    2 ikfeqvskaykgaaelaldnvtvkiekGelvflvGhsGaGkstllklilgiekpsaGkirvsgqdltklrdrevpflrrqiGivfqdfkllsdrtvydnvala...lriiGvkgreieervsaalekvGlkdkakalPvqlsgGeqqrvaiaravvnkPallladePtgnlddelsrdilelleevnraGttvlvathdenlveskrkrvltlskGk 215 
                  ikf  v+  y+ +    ld++ +++   e + +vG +GaGks++l  +    + ++G i + g d++++  +    lr ++ i+ qd  l++    y+   +     + +  +  +++  + +  +  Gl    ++   +ls G++q v++ ra++++  +l+ de t+ +d ++   i + le+ + +  tvl  +h  + +   + rv+++ +G+
  MMETSP1137-20121227|7519_1 1320 IKFTAVTMCYRPGLPNVLDDMYLDVAPCEKIGIVGRTGAGKSSVLVCLFRLVELKSGTIEIDGRDIARMPLK---ELRSRLSIIPQDPVLFTGTLRYNLDPFNefdDEHLWRTLGQCSIEAPMRQHPDGLDRPIEERGANLSMGQRQLVCMCRALLKNSRVLVLDEATASVDMDTDALIQRTLET-ELTQATVLTIAHRLDTIMG-NDRVVVMANGR 1531
                  89*****************************************************************98755...59**********999887666654333311133333333444444444555679**9*********************************************99999986.7788899999999887765.45777777776 PP

>> TIGR01184  ntrCD: nitrate ABC transporter, ATP-binding proteins C and D
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.1   0.1   2.5e-13   1.5e-11       1     197 [.     709     899 ..     709     921 .. 0.71
   2 !   48.2   0.3   3.4e-15   2.1e-13       1     197 [.    1337    1536 ..    1337    1548 .. 0.86

  Alignments for each domain:
  == domain 1    score: 42.1 bits;  conditional E-value: 2.5e-13
   TIGR01184   1 lkdvdleikkgefislighsgcgkstllnliaglekptsgavilegkeitepgpdrmvvfqnysllpwltvrenialavdavlrdlskserreiveehielvglreaad..krpeqlsggmkqrvaiaralsirpklllldepfgaldaltreelqekll.kiveearvtvlmvthdvdealllsdrvvmltngpaakig 197
                 lkd+ l++ +g +i + g  gcgk+tll  i g     +g  ++ g+ i     +    +qn sl      r+n+ +   +  +  ++      +e ++  ++  +a++   r  +lsgg k rva+ara   r +  lld+ + a+da   ++l  k +  +++e  +tv++vth      +  + v m + g   k g
  MMETSP1137-20121227|7519_1 709 LKDITLNVPRGAIIGVCGPVGCGKTTLLSSILGDVPRVAGRAVVRGE-IAFCAQEP--WIQNISL------RDNVLFGRPMDEALYARVISACALEXDLLALADGDATEigERGLNLSGGQKARVALARACYARADTYLLDDVLSAVDAEVGQHLMTKCIaGLLREWGATVIFVTHHTHWLHMCDQGVFMSAHGTIEKQG 899
                 79*****************************9976666777777764.55444443..3466665......788877655444444444444444444333333334332256779*********************************999998888662699************976544444445555555554444 PP

  == domain 2    score: 48.2 bits;  conditional E-value: 3.4e-15
   TIGR01184    1 lkdvdleikkgefislighsgcgkstllnliaglekptsgavilegkeite.pg...pdrmvvfqnysllpwltvrenialavdavlrdlskserreiveehiel..vglreaadkrpeqlsggmkqrvaiaralsirpklllldepfgaldaltreelqekllkiveearvtvlmvthdvdealllsdrvvmltngpaakig 197 
                  l+d+ l++   e i ++g +g gks++l  +  l +  sg++ ++g++i + p      r+ ++ +  +l   t r n+    +   ++l ++  +  +e  +     gl +  + r ++ls g +q v + ral    ++l+lde   ++d  t   +q  l   +e +++tvl ++h +d  ++  drvv+++ng  a+ g
  MMETSP1137-20121227|7519_1 1337 LDDMYLDVAPCEKIGIVGRTGAGKSSVLVCLFRLVELKSGTIEIDGRDIARmPLkelRSRLSIIPQDPVLFTGTLRYNLDPFNEFDDEHLWRTLGQCSIEAPMRQhpDGLDRPIEERGANLSMGQRQLVCMCRALLKNSRVLVLDEATASVDMDTDALIQRTLE--TELTQATVLTIAHRLDT-IMGNDRVVVMANGRVAETG 1536
                  68999********************************************8734311246888888888888899****9988877777777777777777666541259*******************************************999888887775..466789*********95.789**********999887 PP

>> TIGR01189  ccmA: heme ABC exporter, ATP-binding protein CcmA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.7   0.1   1.5e-12   8.9e-11      16     187 ..     709     877 ..     702     884 .. 0.79
   2 !   49.8   0.0   1.1e-15     7e-14       8     183 ..    1329    1512 ..    1322    1525 .. 0.82

  Alignments for each domain:
  == domain 1    score: 39.7 bits;  conditional E-value: 1.5e-12
   TIGR01189  16 leglsfelaaGealvveGpnGiGKttLLRilaGLlkpesGevelndkelaeqrdelaeellylgHldglKaeLsalEnLkfyaallqseqk.tveealekvgLsgledlpvaqLsAGqkrRlalarLllskaplWiLDEPttalDke.gvellaellaaHlargGi.vllathqd 187
                 l+++++++  G ++ v Gp G GKttLL  + G ++  +G+  + ++     ++     ++ ++ +d +     + E L  ya+++++  +     al++ + +++ ++ + +Ls Gqk R+alar   ++a  ++LD+ + a+D+e g++l+++ +a  l++ G+ v+  th+ 
  MMETSP1137-20121227|7519_1 709 LKDITLNVPRGAIIGVCGPVGCGKTTLLSSILGDVPRVAGRAVVRGEIAFCAQEP---WIQNISLRDNVLFGRPMDEAL--YARVISACALeXDLLALADGDATEIGERGL-NLSGGQKARVALARACYARADTYLLDDVLSAVDAEvGQHLMTKCIAGLLREWGAtVIFVTHHT 877
                 788999***********************************99996554444444...477777788887777777776..566665444324445666666666666654.69*******************************983588888899998887665266788875 PP

  == domain 2    score: 49.8 bits;  conditional E-value: 1.1e-15
   TIGR01189    8 veRgervlleglsfelaaGealvveGpnGiGKttLLRilaGLlkpesGevelndkelaeqrdelaeellylgHldglKaeLsalEnLkfyaallq......seqktveealekv..gLsgledlpvaqLsAGqkrRlalarLllskaplWiLDEPttalDkegvellaellaaHlargGivlla 183 
                  ++ g  ++l ++ +++a+ e + ++G+ G+GK+++L  l  L++ +sG++e++++++a++  +  ++ l +  +d +  + + + nL+ ++++ +        q ++e+ + +   gL+   +   a+Ls Gq++ + + r ll++ ++ +LDE t+++D ++ +l++++l+  l++  +  +a
  MMETSP1137-20121227|7519_1 1329 YRPGLPNVLDDMYLDVAPCEKIGIVGRTGAGKSSVLVCLFRLVELKSGTIEIDGRDIARMPLKELRSRLSIIPQDPVLFTGTLRYNLDPFNEFDDehlwrtLGQCSIEAPMRQHpdGLDRPIEERGANLSMGQRQLVCMCRALLKNSRVLVLDEATASVDMDTDALIQRTLETELTQATVLTIA 1512
                  44566689999************************************************9888888888888999999999*********99988333322122244444443233677767777889********************************************999876554444 PP

>> TIGR02211  LolD_lipo_ex: lipoprotein releasing system, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.8   0.0   0.00022     0.014      19      66 ..     707     754 ..     696     763 .. 0.78
   2 !   19.9   0.0   1.5e-06   9.3e-05     136     212 ..     810     887 ..     798     896 .. 0.87
   3 !   53.0   0.3   1.2e-16   7.1e-15      19     220 ..    1335    1533 ..    1320    1534 .. 0.84

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 0.00022
   TIGR02211  19 evlkgvsleiekgelvaivGssGsGkstllhllggldkptsGevllkG 66 
                 ++lk++ l++ +g ++++ G  G Gk+tll  + g     +G+ +++G
  MMETSP1137-20121227|7519_1 707 STLKDITLNVPRGAIIGVCGPVGCGKTTLLSSILGDVPRVAGRAVVRG 754
                 689***************************754443333455555555 PP

  == domain 2    score: 19.9 bits;  conditional E-value: 1.5e-06
   TIGR02211 136 nkkpselsGGerqrvaiaralvnkPklvladePtgnldkktakkif.elllelnkekntallvvthdlelakkldrvl 212
                  ++  +lsGG++ rva+ara   + +  l d+  + +d++  ++++ + +  l +e + +++ vth ++  +  d+ +
  MMETSP1137-20121227|7519_1 810 GERGLNLSGGQKARVALARACYARADTYLLDDVLSAVDAEVGQHLMtKCIAGLLREWGATVIFVTHHTHWLHMCDQGV 887
                 567779**********************************99887627899***************999888777655 PP

  == domain 3    score: 53.0 bits;  conditional E-value: 1.2e-16
   TIGR02211   19 evlkgvsleiekgelvaivGssGsGkstllhllggldkptsGevllkGkelsklssne....raklrnkklGfiyqfhhlladftalenvamPlliskkskkeakerakellekvglekrinkkpselsGGerqrvaiaralvnkPklvladePtgnldkktakkifelllelnkekntallvvthdlelakkldrvlelkdgkla 220 
                  +vl+++ l++   e ++ivG +G+Gks +l  l  l +  sG+++++G+++ ++  +e     + +    + f   + + l  f+ +++  +   +++ s++   ++     +  gl++ i+++ ++ls G+rq v + ral+++ ++++ de t+ +d +t   i + l e + ++  ++l ++h l+ +   drv+ + +g++a
  MMETSP1137-20121227|7519_1 1335 NVLDDMYLDVAPCEKIGIVGRTGAGKSSVLVCLFRLVELKSGTIEIDGRDIARMPLKElrsrLSIIPQDPVLFTGTLRYNLDPFNEFDDEHLWRTLGQCSIEAPMRQ-----HPDGLDRPIEERGANLSMGQRQLVCMCRALLKNSRVLVLDEATASVDMDTDALIQRTL-ETELTQ-ATVLTIAHRLDTIMGNDRVVVMANGRVA 1533
                  69**************************************************9986552111344556778888899999999999999999999998887655444.....456999*****************************************99887766544.334343.4567789******************986 PP

>> TIGR03719  ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.6   0.0   2.5e-07   1.5e-05     338     378 ..     709     749 ..     702     764 .. 0.86
   2 !   22.3   0.0   1.5e-07   9.2e-06     161     222 ..     815     881 ..     792     894 .. 0.84
   3 !   14.6   0.0   3.3e-05     0.002      17      50 ..    1333    1366 ..    1319    1385 .. 0.83
   4 !   19.1   0.0   1.4e-06   8.9e-05     157     216 ..    1452    1513 ..    1427    1521 .. 0.84

  Alignments for each domain:
  == domain 1    score: 21.6 bits;  conditional E-value: 2.5e-07
   TIGR03719 338 iddlsfklpkggivGviGpnGaGkstlfklitgkekpdsGe 378
                 ++d+++++p+g+i+Gv Gp G+Gk+tl+  i g+    +G+
  MMETSP1137-20121227|7519_1 709 LKDITLNVPRGAIIGVCGPVGCGKTTLLSSILGDVPRVAGR 749
                 6899*************************999987766665 PP

  == domain 2    score: 22.3 bits;  conditional E-value: 1.5e-07
   TIGR03719 161 klsGGekrrvalcrlllekPdlllldePtnhldaesvaWlek.....flkeykGtvvavthdryfld 222
                 +lsGG+k rval+r    + d  lld+    +dae  + l        l+e+  tv+ vth  ++l 
  MMETSP1137-20121227|7519_1 815 NLSGGQKARVALARACYARADTYLLDDVLSAVDAEVGQHLMTkciagLLREWGATVIFVTHHTHWLH 881
                 79*********************************98776542222279************999986 PP

  == domain 3    score: 14.6 bits;  conditional E-value: 3.3e-05
   TIGR03719   17 kkeilkdislsffpgakiGvlGlnGaGkstllki 50  
                    ++l+d++l   p  kiG++G  GaGks++l  
  MMETSP1137-20121227|7519_1 1333 LPNVLDDMYLDVAPCEKIGIVGRTGAGKSSVLVC 1366
                  4589*************************99865 PP

  == domain 4    score: 19.1 bits;  conditional E-value: 1.4e-06
   TIGR03719  157 akveklsGGekrrvalcrlllekPdlllldePtnhldaesvaWlekflke..ykGtvvavth 216 
                   + ++ls G+++ v +cr ll++  +l+lde t  +d ++ a +++ l+    + tv+ ++h
  MMETSP1137-20121227|7519_1 1452 ERGANLSMGQRQLVCMCRALLKNSRVLVLDEATASVDMDTDALIQRTLETelTQATVLTIAH 1513
                  44578*****************************************9986335788999988 PP

>> TIGR00954  3a01203: peroxysomal long chain fatty acyl transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.0   0.0   1.1e-15   6.8e-14     470     644 ..     710     881 ..     706     894 .. 0.80
   2 !   26.0   0.0     1e-08   6.4e-07     451     639 ..    1318    1514 ..    1265    1519 .. 0.81

  Alignments for each domain:
  == domain 1    score: 49.0 bits;  conditional E-value: 1.1e-15
   TIGR00954 470 eeLsfevksGnhlLiiGPnGcGKsslf.RilgelWPvygglltkpeegklFyvPqrPYmslgtlRdqiiYPdssed.fkerglsdkdLeqiLeevkLedllereggwdavqdWkdvLsgGekqRiamARlfyHkPkfavLDEctsAvsvdvEdklyela.....kevgitllsvshrksLwk 644
                 ++++++v+ G  + ++GP GcGK  l   ilg++ P ++g+  +  +g++ +  q P++ + +lRd +++   +++ +  r +s   Le  L    L      +g    + +    LsgG+k R+a+AR  y +    +LD+  sAv  +v ++l  ++     +e g t++ v+h +  ++
  MMETSP1137-20121227|7519_1 710 KDITLNVPRGAIIGVCGPVGCGKTTLLsSILGDV-PRVAGRAVV--RGEIAFCAQEPWIQNISLRDNVLFGRPMDEaLYARVISACALEXDLL--ALA-----DGDATEIGERGLNLSGGQKARVALARACYARADTYLLDDVLSAVDAEVGQHLMTKCiagllREWGATVIFVTHHTHWLH 881
                 6899********************9872577776.888898876..68899*******************88766526778888888876443..333.....3334455566667*************************************99987644444888888888888765544 PP

  == domain 2    score: 26.0 bits;  conditional E-value: 1e-08
   TIGR00954  451 ngikfeniplvt.PegdvlieeLsfevksGnhlLiiGPnGcGKsslfRilgelWPvyg...........glltkpeegklFyvPqrPYmslgtlRdqiiYPdssedfkerglsdkdLeqiLeevkLedller.eggwda.vqdWkdvLsgGekqRiamARlfyHkPkfavLDEctsAvsvdvEdklyelake..vgitllsvshr 639 
                   +ikf  + +   P    +++++ ++v   +++ i+G  G GKss+   l  l  + +            +  k+ +++l  +Pq P + +gtlR  +      + f   ++ d++L + L +  +e  +++   g+d  +++    Ls G++q + m R +    +  vLDE+t+ v +d +  + +++    ++ t+l+++hr
  MMETSP1137-20121227|7519_1 1318 GQIKFTAVTMCYrPGLPNVLDDMYLDVAPCEKIGIVGRTGAGKSSVLVCLFRLVELKSgtieidgrdiaRMPLKELRSRLSIIPQDPVLFTGTLRYNL------DPF--NEFDDEHLWRTLGQCSIEAPMRQhPDGLDRpIEERGANLSMGQRQLVCMCRALLKNSRVLVLDEATASVDMDTDALIQRTLETelTQATVLTIAHR 1514
                  5677777777642555678899999********************9999999998888777788777654445677899****************653......233..25789************9977651578985499999*********************************999988888876542257789999998 PP

>> TIGR01194  cyc_pep_trnsptr: cyclic peptide transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.4   0.0     1e-09   6.3e-08     349     544 ..     701     891 ..     694     899 .. 0.83
   2 !   42.3   0.1   1.3e-13   7.9e-12      55     548 ..    1034    1533 ..    1024    1536 .. 0.79

  Alignments for each domain:
  == domain 1    score: 29.4 bits;  conditional E-value: 1e-09
   TIGR01194 349 vessegfalGpidlriasGelvyivGenGcGkstliklllGlyipqeGellldGeavsdesrddyrdlfsavfadyylfddlvqpdekkqasldqatty.lsrleledkvkvedlnystttdlstGqrkrlalvnayleerpvllldewaadqdpafkrvfyeellpdlkrr.Gktilvishddryfeladrliklad 544
                  e+s + +l  i l++ +G ++ + G  GcGk+tl+  +lG      G+ ++ Ge     +++ + +  s  + d  lf + ++  e   a +  a     + l l+d    e ++     +ls Gq+ r+al  a       +lld+  +  d    + + ++ +  l r+ G t++ ++h  +++++ d+ + +++
  MMETSP1137-20121227|7519_1 701 DEASMPSTLKDITLNVPRGAIIGVCGPVGCGKTTLLSSILGDVPRVAGRAVVRGEIA-FCAQEPWIQNIS--LRDNVLFGRPMD--EALYARVISACALeXDLLALADGDATEIGERG--LNLSGGQKARVALARACYARADTYLLDDVLSAVDAEVGQHLMTKCIAGLLREwGATVIFVTHHTHWLHMCDQGVFMSA 891
                 5789999**********************************99999********954.456677877776..79*******987..66666665554431456677766555555444..67**********************************99999999999887755******************9776654 PP

  == domain 2    score: 42.3 bits;  conditional E-value: 1.3e-13
   TIGR01194   55 llsfvGlsllallsrivadlftayvsqriiarlrkelgekvlsapleeverrrahrlltlltsdidtlsdtllilttllvelavtl.fglaylayls..vvvflltvvlivlGvaayllarsrGlkftykvrdeedelnkyttalvsGlkelklnrirrlsfarsais.esavrvadlniieilifilaktvGslllsllvGllltlaayfav.id.....akaisasvlvllyikG...plvqlvsilpilararvaftrlaels.erisepepelelseaenvllldhdksvdslelkdvrysykdvessegfalGpidlriasGelvyivGenGcGkstliklllGlyipqeGellldGeavsdesrddyrdlfsavfadyylfddlvqpdekkqasldqat..tylsrleledkvkvedlnys.....tttdlstGqrkrlalvnayleerpvllldewaadqdpafkrvfyeellpdlkrrGktilvishddryfeladrlikladGkvv 548 
                  ++ ++G+s++a  +  v  l   ++s r    +  +  + v++ap+   +     r+l  ++ d ++++  l   ++ l+  +  l ++l  l+  s  +++ l+ ++++ + vaay+   sr ++ +  +      +  +t+a v G   ++  r  ++++ + a + +  +r   + +    ++++  ++ s +l  l  ll +l+ + a  +d     a+a++   l+l y  G    l+ l+  +  l    v+++rla++s  + +e +p+  +s a+      +  + + +++  v + y+      +  l  + l +a  e + ivG  G Gks+++  l  l   ++G + +dG  ++     + r  +s +  d  lf   +  + +     d+ +  + l +  +e  ++ +  +         ++ls+Gqr+ + +  a l++  vl+lde +a  d     +    l  +l +   t+l i+h        dr++ +a+G+v 
  MMETSP1137-20121227|7519_1 1034 MFVYAGISMIASGMIFVRLLVMVFASLRAARIIHDDALKAVIAAPMAFFDTNPLGRILNRFSVDQQKVDVQLSPTASQLIMYTFNLiGTLVILTGNSpwIAISLIPLSIVYVRVAAYYRESSREMQRLDSISK-SPIYTAFTEA-VNGTPTIQAFRATERFYDENARKfDYNQRAGFVSYGANRWLTVRLEFLSNILLALTALLSVLTHLLAKgSDdgshaAAAMA--GLALSYAPGlseTLNWLLRQFTTLETMMVSIERLAQYSgIKAEETQPHAVTSTAD------EWPTRGQIKFTAVTMCYRP---GLPNVLDDMYLDVAPCEKIGIVGRTGAGKSSVLVCLFRLVELKSGTIEIDGRDIARMPLKELRSRLSIIPQDPVLFTGTLRYNLDPFNEFDDEHlwRTLGQCSIEAPMRQHPDGLDrpieeRGANLSMGQRQLVCMCRALLKNSRVLVLDEATASVDMDTDALIQRTLETELTQ--ATVLTIAHRLDTIMGNDRVVVMANGRVA 1533
                  68899******99888999999999999988889999999************************999977666666666666654414556666555433566788899999**************9988754.4455666666.689999999999999998776661555566667899999999988877766666666666666555531331110033333..36677866622267778888899999**********97378999**********9......67899***********975...57889************************************************************************999876666666555441156778889888776655543111124689****************************988888777777777777764..69999***99999999999999999985 PP

>> TIGR02770  nickel_nikD: nickel import ATP-binding protein NikD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   0.0   0.00017     0.011       3      53 ..     710     762 ..     708     781 .. 0.81
   2 !   19.4   0.0   1.9e-06   0.00011     125     227 ..     815     917 ..     804     920 .. 0.86
   3 !   36.5   0.6   1.1e-11   6.8e-10       3     210 ..    1338    1538 ..    1336    1555 .. 0.80

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 0.00017
   TIGR02770   3 qdvnlslkrgkvlalvGesGsGksltalailglld..keltktsGeilldgke 53 
                 +d+ l++ rg ++++ G  G+Gk++  ++ilg  +  ++ + ++Gei++  +e
  MMETSP1137-20121227|7519_1 710 KDITLNVPRGAIIGVCGPVGCGKTTLLSSILGDVPrvAGRAVVRGEIAFCAQE 762
                 799****************************9887224667789999876554 PP

  == domain 2    score: 19.4 bits;  conditional E-value: 1.9e-06
   TIGR02770 125 elsGGmlqRvmialallleaplliaDePttdlDvvvqaevL.klleelrekrglgillithDlgvvaeladevavmekGkivergtvkelfqePkhettrkLls 227
                 +lsGG   Rv +a a  ++a   + D+  +++D+ v  +++ k +  l ++ g +++++th    +  + + v +  +G  +e++ + + +  P+++  r+L +
  MMETSP1137-20121227|7519_1 815 NLSGGQKARVALARACYARADTYLLDDVLSAVDAEVGQHLMtKCIAGLLREWGATVIFVTHHTHWLHMCDQGVFMSAHGT-IEKQGPPSSLGLPRNASERSLAE 917
                 79*******************************998666552789*******************9988888887777776.57777777788899998888865 PP

  == domain 3    score: 36.5 bits;  conditional E-value: 1.1e-11
   TIGR02770    3 qdvnlslkrgkvlalvGesGsGksltalailglldkeltktsGeilldgkelaal...alrgreialilqnPrsafnPlltikeqlletlkalekls.kqakelivealea..vgLeeaeevlkkypfelsGGmlqRvmialallleaplliaDePttdlDvvvqaevLklleelrekrglgillithDlgvvaeladevavmekGkivergtv 210 
                  +d+ l++   + +++vG  G+Gks + + +  l +      sG i +dg+++a +   +lr  ++++i q+P+     l+   + + e    +   +  q    i + +++   gL+   + +++   +ls G  q v +  all ++ +l+ De t+ +D+++ a + ++le+  e ++ ++l i+h l  +    d v+vm +G++ e+g++
  MMETSP1137-20121227|7519_1 1338 DDMYLDVAPCEKIGIVGRTGAGKSSVLVCLFRLVE----LKSGTIEIDGRDIARMplkELR-SRLSIIPQDPVLFTGTLRYNLDPFNEFDDEHLWRTlGQCS--IEAPMRQhpDGLD---RPIEERGANLSMGQRQLVCMCRALLKNSRVLVLDEATASVDMDTDALIQRTLET--ELTQATVLTIAHRLDTIMG-NDRVVVMANGRVAETGPP 1538
                  677888888999************98888888877....679***********99664444.469*******987777777677777765555544434444..4444433114555...77899999***999999999999*****************************95..667789*********9965.79************9875 PP

>> TIGR01288  nodI: nodulation ABC transporter NodI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.6   1.0   3.3e-07     2e-05      21     209 ..     710     890 ..     706     905 .. 0.74
   2 !   45.4   0.1   1.8e-14   1.1e-12      17     234 ..    1334    1552 ..    1319    1557 .. 0.82

  Alignments for each domain:
  == domain 1    score: 21.6 bits;  conditional E-value: 3.3e-07
   TIGR01288  21 ndlsftiaagecfgllgpngagkstiarlvlglispdegkitvlgepvpararlarakigvvpqfdnldreftvrenllvfgryf..glstreieevi..psllefarles.kadvrvadlsggmkrrltlaralindpqllildepttgldpha.rhliwerlrslla.rgktilltthlmeeaerlcdrlcvle 209
                 +d+++ + +g  +g+ gp g+gk+t+   +lg ++   g+  v ge            i   +q   + ++++ r+n+l fgr +   l +r i +      ll +a  ++     r  +lsgg k r++lara     +  +ld+  + +d    +hl+ + +  ll   g t+++ th       +cd+ + + 
  MMETSP1137-20121227|7519_1 710 KDITLNVPRGAIIGVCGPVGCGKTTLLSSILGDVPRVAGRAVVRGE------------IAFCAQEPWI-QNISLRDNVL-FGRPMdeALYARVISACAleXDLLALADGDAtEIGERGLNLSGGQKARVALARACYARADTYLLDDVLSAVDAEVgQHLMTKCIAGLLReWGATVIFVTHHTHW-LHMCDQGVFMS 890
                 689999**************************99988888777665............4444443333.3456677764.6776522466676665431145666666554145678899********************************97538*******99996269*****9998754.45788765554 PP

  == domain 2    score: 45.4 bits;  conditional E-value: 1.8e-14
   TIGR01288   17 kvvvndlsftiaagecfgllgpngagkstiarlvlglispdegkitvlgepvpar.arlarakigvvpqfdnldreftvrenllvfgryfglst.reieev.i..psllefarleskadvrvadlsggmkrrltlaralindpqllildepttgldpharhliwerlrsllargktilltthlmeeaerlcdrlcvleagrkiaegrpdalideqigcdviei 234 
                    v++d+ + +a  e +g++g  gagks++   ++ l+  + g+i + g ++     +  r+++ ++pq d +    t r nl  f  +   +  r++ +  i  p   +   l+   + r a+ls g ++ + ++ral+++ ++l+lde t+ +d  +  li   l + l++  t+l  +h ++      dr++v+ +gr +ae  p  ++ e+ g  + e+
  MMETSP1137-20121227|7519_1 1334 PNVLDDMYLDVAPCEKIGIVGRTGAGKSSVLVCLFRLVELKSGTIEIDGRDIARMpLKELRSRLSIIPQ-DPVLFTGTLRYNLDPFNEFDDEHLwRTLGQCsIeaPMRQHPDGLDRPIEERGANLSMGQRQLVCMCRALLKNSRVLVLDEATASVDMDTDALIQRTLETELTQA-TVLTIAHRLDTI-MGNDRVVVMANGR-VAETGPPLVLREKEGSRLKEL 1552
                  4589******************************************99987754326789*********.55557789********9998766437765432321555566789***************999*************************************99875.888888988765.568*****99997.677777777778877776665 PP

>> TIGR01978  sufC: FeS assembly ATPase SufC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.0   7.3e-06   0.00044      15      63 ..     708     760 ..     701     773 .. 0.81
   2 !   11.4   0.0   0.00056     0.034     135     228 ..     808     900 ..     793     906 .. 0.83
   3 !   33.8   0.0   8.2e-11     5e-09      14     231 ..    1335    1540 ..    1327    1549 .. 0.82

  Alignments for each domain:
  == domain 1    score: 17.6 bits;  conditional E-value: 7.3e-06
   TIGR01978  15 iLkglnlevkkGevhaimGpnGsGkstLskvlagh....ekyevtsGeiklkg 63 
                  Lk+++l+v +G++  + Gp G Gk tL + + g+        v++Gei++  
  MMETSP1137-20121227|7519_1 708 TLKDITLNVPRGAIIGVCGPVGCGKTTLLSSILGDvprvAGRAVVRGEIAFCA 760
                 69****************************99998322223468888888755 PP

  == domain 2    score: 11.4 bits;  conditional E-value: 0.00056
   TIGR01978 135 elleRslneGfsGGekkrneilqlallePklaiLDeiDsGlDvDa.lkivaegvnklree.ekalliithyerllelikPdvvhvlldGrivksGd 228
                 e+ eR ln   sGG k r  + +    + +  +LD++ s +D +   +++++++  l +e   +++ +th+++ l++   + v++ ++G+i k+G 
  MMETSP1137-20121227|7519_1 808 EIGERGLN--LSGGQKARVALARACYARADTYLLDDVLSAVDAEVgQHLMTKCIAGLLREwGATVIFVTHHTHWLHMCD-QGVFMSAHGTIEKQGP 900
                 56677787..6*******************************9961567789998876665899999******998764.6789999999999885 PP

  == domain 3    score: 33.8 bits;  conditional E-value: 8.2e-11
   TIGR01978   14 eiLkglnlevkkGevhaimGpnGsGkstLskvlaghekyevtsGeiklkgqdlleleveeraraGlflafqapeeipGvsnkeflrsalnavrkargeeeldllefekllkeklelleldeelleRslneGfsGGekkrneilqlallePklaiLDeiDsGlDvDalkivaegvnklreeekalliithyerllelikPdvvhvlldGrivksGdvel 231 
                  ++L+++ l+v + e   i+G+ G+Gks +   l   + +e+ sG+i+++g+d++ +  +e  r  l +  q p+  +G    +   +  n   +++  ++l + + e  ++++ +   ld+ + eR  n   s G ++   +++ +l + ++ +LDe+ + +D+D+  ++ +++++  ++  ++l i+h  rl   +  d v v+++Gr++++G   +
  MMETSP1137-20121227|7519_1 1335 NVLDDMYLDVAPCEKIGIVGRTGAGKSSVLVCLF--RLVELKSGTIEIDGRDIARMPLKEL-RSRLSIIPQDPVLFTGTLRYN--LDPFNEFDDEHLWRTLGQCSIEAPMRQHPDG--LDRPIEERGAN--LSMGQRQLVCMCRALLKNSRVLVLDEATASVDMDTDALIQRTLETELTQ-ATVLTIAH--RLDTIMGNDRVVVMANGRVAETGPPLV 1540
                  699************************9998887..568999***************9995.45577889****999975444..3566666666666667777777777776665..56678899988..699**********9999*******************9999998865544.44555665..7888999***************97655 PP

>> TIGR02324  CP_lyasePhnL: phosphonate C-P lyase system protein PhnL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   3.1e-05    0.0019      22      70 ..     707     755 ..     698     775 .. 0.83
   2 !    9.3   0.0    0.0025      0.15     150     210 ..     816     878 ..     813     890 .. 0.78
   3 !   19.7   0.0   1.6e-06   9.9e-05      22      68 ..    1335    1381 ..    1328    1394 .. 0.92
   4 !   16.6   0.0   1.4e-05   0.00088     149     208 ..    1456    1514 ..    1451    1527 .. 0.83

  Alignments for each domain:
  == domain 1    score: 15.5 bits;  conditional E-value: 3.1e-05
   TIGR02324  22 pvlkevsleveaGelvalsGksGaGkstllkslyanYlpesgrilvrhe 70 
                 ++lk+++l+v  G ++ + G+ G Gk tll s+ ++    +gr +vr e
  MMETSP1137-20121227|7519_1 707 STLKDITLNVPRGAIIGVCGPVGCGKTTLLSSILGDVPRVAGRAVVRGE 755
                 5799*****************************9998888888887754 PP

  == domain 2    score: 9.3 bits;  conditional E-value: 0.0025
   TIGR02324 150 fsGGekqRvniaraliadrPiLLLdePtasLdaanrk.vvvelikea.kargaaligifhdee 210
                  sGG k Rv +ara  a     LLd+  +++da   +  + + i+ + ++ ga++i + h+ +
  MMETSP1137-20121227|7519_1 816 LSGGQKARVALARACYARADTYLLDDVLSAVDAEVGQhLMTKCIAGLlREWGATVIFVTHHTH 878
                 69*****************************99765514556666651455888888888765 PP

  == domain 3    score: 19.7 bits;  conditional E-value: 1.6e-06
   TIGR02324   22 pvlkevsleveaGelvalsGksGaGkstllkslyanYlpesgrilvr 68  
                  +vl+++ l+v+  e + + G++GaGks++l +l++    +sg+i + 
  MMETSP1137-20121227|7519_1 1335 NVLDDMYLDVAPCEKIGIVGRTGAGKSSVLVCLFRLVELKSGTIEID 1381
                  68999*********************************999999875 PP

  == domain 4    score: 16.6 bits;  conditional E-value: 1.4e-05
   TIGR02324  149 tfsGGekqRvniaraliadrPiLLLdePtasLdaanrkvvvelikeakargaaligifhd 208 
                    s G +q v + ral+++  +L+Lde tas+d  + + +   ++ +  + a++++i h 
  MMETSP1137-20121227|7519_1 1456 NLSMGQRQLVCMCRALLKNSRVLVLDEATASVDMDTDALIQRTLE-TELTQATVLTIAHR 1514
                  6799****************************9999876666555.55556778888885 PP

>> TIGR03269  met_CoM_red_A2: methyl coenzyme M reductase system, component A2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.7   0.0   0.00049      0.03     301     344 ..     710     753 ..     702     771 .. 0.74
   2 !   13.9   0.0   5.2e-05    0.0032     168     254 ..     815     902 ..     798     914 .. 0.69
   3 !    9.4   0.0    0.0012     0.075      14      49 ..    1335    1371 ..    1320    1392 .. 0.66
   4 !   27.0   0.2   5.6e-09   3.4e-07     425     512 ..    1454    1538 ..    1446    1549 .. 0.86

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 0.00049
   TIGR03269 301 dnvslevkekeifGlvGtsGaGkttlskilaGvleptsGevevr 344
                  +++l+v ++ i G+ G  G Gkttl   ++G ++  +G+ +vr
  MMETSP1137-20121227|7519_1 710 KDITLNVPRGAIIGVCGPVGCGKTTLLSSILGDVPRVAGRAVVR 753
                 56777888888888888888888887777777777777776665 PP

  == domain 2    score: 13.9 bits;  conditional E-value: 5.2e-05
   TIGR03269 168 dlsGGekqrvvlarqlakeplllladeptGtldpkta.klvhealkeavkeedislvltshwpeviedlsdkaill.ekGeiveeGepe 254
                 +lsGG+k rv lar    +   +l d+   ++d +   +l+ + +    +e + +++  +h+++ ++ ++d+ +++  +G+i ++G p+
  MMETSP1137-20121227|7519_1 815 NLSGGQKARVALARACYARADTYLLDDVLSAVDAEVGqHLMTKCIAGLLREWGATVIFVTHHTHWLH-MCDQGVFMsAHGTIEKQGPPS 902
                 5777777777777777666666666777777777654146677777777777777777777777765.445555541467777777665 PP

  == domain 3    score: 9.4 bits;  conditional E-value: 0.0012
   TIGR03269   14 evlknisleleeGevlGilGksGaGks.vllhllrGl 49  
                  +vl ++ l++   e +Gi+G++GaGks vl+ l+r +
  MMETSP1137-20121227|7519_1 1335 NVLDDMYLDVAPCEKIGIVGRTGAGKSsVLVCLFRLV 1371
                  4666677777777777777777777742455554443 PP

  == domain 4    score: 27.0 bits;  conditional E-value: 5.6e-09
   TIGR03269  425 pdelseGerhrvalaqvlikeprivildeptGtmdpitkvkvaesilkareelee.tfvivshdmdfvlevcdraalmrdGkivkiGdp 512 
                    +ls G+r  v + + l+k+ r+++lde t ++d  t   +++++    +el + t + ++h +d ++   dr+ +m +G++ ++G+p
  MMETSP1137-20121227|7519_1 1454 GANLSMGQRQLVCMCRALLKNSRVLVLDEATASVDMDTDALIQRTLE---TELTQaTVLTIAHRLDTIMG-NDRVVVMANGRVAETGPP 1538
                  5689*******************************999999888765...4555427889******9865.8***************98 PP

>> TIGR03522  GldA_ABC_ATP: gliding motility-associated ABC transporter ATP-binding subunit GldA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   4.3e-05    0.0027      17      65 ..     708     756 ..     702     770 .. 0.90
   2 ?    1.7   0.0      0.49        30     133     204 ..     815     888 ..     801     900 .. 0.75
   3 !   45.0   0.0   3.3e-14     2e-12      13     211 ..    1332    1533 ..    1320    1546 .. 0.81

  Alignments for each domain:
  == domain 1    score: 15.1 bits;  conditional E-value: 4.3e-05
   TIGR03522  17 aldevsfeaekGeivGflGPnGaGkstlmkiltgylkadsGsvavaged 65 
                 +l+++++++ +G i+G  GP G Gk+tl+  + g ++  +G + v ge 
  MMETSP1137-20121227|7519_1 708 TLKDITLNVPRGAIIGVCGPVGCGKTTLLSSILGDVPRVAGRAVVRGEI 756
                 6899*************************************99999875 PP

  == domain 2    score: 1.7 bits;  conditional E-value: 0.49
   TIGR03522 133 alskGyrqrvGlakallhdPkvlildePttGldPn..qlveirevikeiakd..ktvilsthimqevealcdrvii 204
                 +ls G + rv la+a     +  +ld+  + +d +  q + + + i+ + ++   tvi+ th    +  +cd+ + 
  MMETSP1137-20121227|7519_1 815 NLSGGQKARVALARACYARADTYLLDDVLSAVDAEvgQHL-MTKCIAGLLREwgATVIFVTHHTHWL-HMCDQGVF 888
                 6999*************************99998632433.34555555544226999999987665.47776554 PP

  == domain 3    score: 45.0 bits;  conditional E-value: 3.3e-14
   TIGR03522   13 gkqkaldevsfeaekGeivGflGPnGaGkstlmkiltgylkadsGsvavagedvlknsl.evrkniGylPehnPlyldl...yvreylefsaalyklkgrklkkrveelielv..GlkaeqhkkigalskGyrqrvGlakallhdPkvlildePttGldPnqlveirevikeiakdktvilsthimqevealcdrviiinkGkiv 211 
                  g  ++ld++ +++ + e +G +G  GaGks+++  l   ++ +sG+++++g d+ + +l e r  +  +P+   l+       +  + ef  +   l  ++ +  +e+ +++   Gl +    + ++ls G rq v + +all + +vl+lde t+ +d +    i++ +++   + tv+  +h +  +    drv+++ +G++ 
  MMETSP1137-20121227|7519_1 1332 GLPNVLDDMYLDVAPCEKIGIVGRTGAGKSSVLVCLFRLVELKSGTIEIDGRDIARMPLkELRSRLSIIPQDPVLFTGTlryNLDPFNEFDDE--HLWRTLGQCSIEAPMRQHpdGLDRPIEERGANLSMGQRQLVCMCRALLKNSRVLVLDEATASVDMDTDALIQRTLETELTQATVLTIAHRLDTIMG-NDRVVVMANGRVA 1533
                  56799**************************************************9996278999*****99999876511034455666543..33335556678777766444******************************************9988766666666555566799999999888765.6999999999975 PP

>> TIGR03415  ABC_choXWV_ATP: choline ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   0.1      0.02       1.2      40      84 ..     709     753 ..     700     765 .. 0.83
   2 !   29.6   0.0   1.1e-09     7e-08     121     225 ..     768     877 ..     756     909 .. 0.86
   3 !    6.9   0.0    0.0095      0.58      41      87 ..    1338    1384 ..    1322    1401 .. 0.86
   4 !   17.4   0.1     6e-06   0.00037     159     249 ..    1451    1538 ..    1444    1545 .. 0.80

  Alignments for each domain:
  == domain 1    score: 5.8 bits;  conditional E-value: 0.02
   TIGR03415  40 vadasldveeGeilvlmGlsGsGkssllravnglnpvsrGkvlvk 84 
                  +d++l+v +G i+ + G  G Gk++ll ++ g  p + G+  v+
  MMETSP1137-20121227|7519_1 709 LKDITLNVPRGAIIGVCGPVGCGKTTLLSSILGDVPRVAGRAVVR 753
                 6799*************************9988776666665554 PP

  == domain 2    score: 29.6 bits;  conditional E-value: 1.1e-09
   TIGR03415 121 rtveenvafGlelsGvakaerrkrveeqlelvglaeWadkkvge....lsGGmqqrvGlarafateadillmdePfsaldPliraklqdell.elqkklkktivfvshdl 225
                  ++++nv fG  ++    a + +  + + +l+ la+   + +ge    lsGG + rv lara    ad  l+d+ +sa+d  + ++l    +  l ++   t++fv+h  
  MMETSP1137-20121227|7519_1 768 ISLRDNVLFGRPMDEALYARVISACALEXDLLALADGDATEIGErglnLSGGQKARVALARACYARADTYLLDDVLSAVDAEVGQHLMTKCIaGLLREWGATVIFVTHHT 877
                 3689**********99999999999999********9999988767669*************************************9988772699************74 PP

  == domain 3    score: 6.9 bits;  conditional E-value: 0.0095
   TIGR03415   41 adasldveeGeilvlmGlsGsGkssllravnglnpvsrGkvlvkded 87  
                  +d+ ldv+  e + ++G +G+Gkss+l ++ +l  +  G +++   d
  MMETSP1137-20121227|7519_1 1338 DDMYLDVAPCEKIGIVGRTGAGKSSVLVCLFRLVELKSGTIEIDGRD 1384
                  6788999999*99****************************997654 PP

  == domain 4    score: 17.4 bits;  conditional E-value: 6e-06
   TIGR03415  159 dkkvgelsGGmqqrvGlarafateadillmdePfsald....PliraklqdellelqkklkktivfvshdldealklGnriaimegGrivqlgtp 249 
                  +++  +ls G +q v + ra+  ++ +l++de  +++d     li+  l  el       + t++ ++h ld  +   +r+ +m +Gr+  +g p
  MMETSP1137-20121227|7519_1 1451 EERGANLSMGQRQLVCMCRALLKNSRVLVLDEATASVDmdtdALIQRTLETELT------QATVLTIAHRLDTIMG-NDRVVVMANGRVAETGPP 1538
                  566789***************************999862222577777776665......469*********8763.459*********998876 PP

>> TIGR03740  galliderm_ABC: lantibiotic protection ABC transporter, ATP-binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0   2.4e-05    0.0015      15      62 ..     708     755 ..     702     900 .. 0.64
   2 !   41.3   0.0   4.7e-13   2.9e-11      14     200 ..    1335    1530 ..    1324    1536 .. 0.75

  Alignments for each domain:
  == domain 1    score: 16.1 bits;  conditional E-value: 2.4e-05
   TIGR03740  15 vvnnvslkvkknsvygllGpnGaGkstllklltGllrktsGeilldgr 62 
                  +++++l+v++ ++ g+ Gp G+Gk+tll  + G + + +G+ ++ g+
  MMETSP1137-20121227|7519_1 708 TLKDITLNVPRGAIIGVCGPVGCGKTTLLSSILGDVPRVAGRAVVRGE 755
                 689*******************************99999988777664 PP

  == domain 2    score: 41.3 bits;  conditional E-value: 4.7e-13
   TIGR03740   14 avvnnvslkvkknsvygllGpnGaGkstllklltGllrktsGeilldgrewtrkdlkkiGs...li.esPalye.....nltarenlkvrtlllglpesrieevlki..vdlentekkkakqfslGmkqrlGiaiallnkPkllildePtnGldPlGiqel.reliksfpekGitvilsshilsevelladhiGiiseG 200 
                  +v++++ l v   +  g++G  GaGks++l  l  l++ +sG i +dgr+++r  lk++ s   +i ++P l+      nl   +++  + l ++l +  ie  ++    +l+     +  ++s+G +q + +  all++ ++l+lde t  +d      + r l + ++    tv+  +h l  +    d + ++++G
  MMETSP1137-20121227|7519_1 1335 NVLDDMYLDVAPCEKIGIVGRTGAGKSSVLVCLFRLVELKSGTIEIDGRDIARMPLKELRSrlsIIpQDPVLFTgtlryNLDPFNEFDDEHLWRTLGQCSIEAPMRQhpDGLDRPIEERGANLSMGQRQLVCMCRALLKNSRVLVLDEATASVDMDTDALIqRTLETELT--QATVLTIAHRLDTIM-GNDRVVVMANG 1530
                  6899999999999999*************************************8888776422266245655533333378888888899999********9987652257999999*********************************99995332222122222222..235555566665553.34555555555 PP

>> TIGR03411  urea_trans_UrtD: urea ABC transporter, ATP-binding protein UrtD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0   2.2e-05    0.0013      17      64 ..     708     755 ..     705     770 .. 0.89
   2 ?    1.5   0.0       0.7        43     140     224 ..     812     899 ..     787     904 .. 0.82
   3 !   38.4   0.0   3.7e-12   2.3e-10      18     224 ..    1337    1536 ..    1331    1543 .. 0.86

  Alignments for each domain:
  == domain 1    score: 16.2 bits;  conditional E-value: 2.2e-05
   TIGR03411  17 alndlslsveegelrviiGpnGaGkttllDvitGktrpdeGsvlfkgk 64 
                  l+d++l+v +g +  + Gp G Gkttll  i G +   +G+++++g+
  MMETSP1137-20121227|7519_1 708 TLKDITLNVPRGAIIGVCGPVGCGKTTLLSSILGDVPRVAGRAVVRGE 755
                 5899********************************999999998876 PP

  == domain 2    score: 1.5 bits;  conditional E-value: 0.7
   TIGR03411 140 kaglLshGqkqwLeigmllvqepkllllDePvaGmtde.etektaellkelake..rsvvvvehDmefvrelaekvtvlheGkvlaeG 224
                 +  +Ls Gqk ++ ++     +++  llD+  + + +e  ++ +++ +  l +e   +v+ v h  ++++  ++ v + ++G++  +G
  MMETSP1137-20121227|7519_1 812 RGLNLSGGQKARVALARACYARADTYLLDDVLSAVDAEvGQHLMTKCIAGLLREwgATVIFVTHHTHWLHMCDQGVFMSAHGTIEKQG 899
                 55689*************************9988765514555677777776653379999*******99999999998888886666 PP

  == domain 3    score: 38.4 bits;  conditional E-value: 3.7e-12
   TIGR03411   18 lndlslsveegelrviiGpnGaGkttllDvitGktrpdeGsvlfkgkdltklkeaeiarlGigRkfqkpsvfeeltvlenlelalk.adksvlallfarlskeekerieevleligLeekadkkaglLshGqkqwLeigmllvqepkllllDePvaGmtdeetektaellkelakersvvvvehDmefvrelaekvtvlheGkvlaeG 224 
                  l+d+ l+v++ e   i+G  GaGk+ +l  +   ++ ++G++ ++g+d+++++ +e+ r+ ++   q p +f   t + nl+   + +d++++++l  ++s e+   +++  +  gL++  +++ ++Ls Gq+q + +   l++++++l+lDe +a +  +  + + + l++   + +v+ + h ++ +   +++v v+++G+v   G
  MMETSP1137-20121227|7519_1 1337 LDDMYLDVAPCEKIGIVGRTGAGKSSVLVCLFRLVELKSGTIEIDGRDIARMPLKEL-RSRLSIIPQDPVLFT-GTLRYNLDPFNEfDDEHLWRTLG-QCSIEA--PMRQ--HPDGLDRPIEERGANLSMGQRQLVCMCRALLKNSRVLVLDEATASVDMDTDALIQRTLETELTQATVLTIAHRLDTIMG-NDRVVVMANGRVAETG 1536
                  78999***********************************************99886.445666789999997.58999**9655516677888883.333333..3333..345899****************************************999999999999999999***********9976.67899*****997766 PP

>> TIGR01257  rim_protein: rim ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.5   0.0   0.00031     0.019     957    1127 ..     720     884 ..     702     905 .. 0.51
   2 !   44.4   0.0   9.6e-15   5.9e-13     959    1152 ..    1350    1546 ..    1324    1551 .. 0.81

  Alignments for each domain:
  == domain 1    score: 9.5 bits;  conditional E-value: 0.00031
   TIGR01257  957 qitaflghngagktttlsiltgllpptsgtvlvggkdietnldavrqslgmcpqhnilfhhltvaehilfyaqlkgrsweeaqlemeamledtglhhkrneeaqdlsgglqrklsvaiafvgdakvvvldeptsgvdpysrrsiwdll...lkyrsgrtiimsthhmdeadllg 1127
                   i  + g  g+gktt ls + g +p  +g  +v g+    + +   q + +  + n+lf    + e   +ya++       + le + +    g      e   +lsgg + ++++a a    a   +ld+  s vd    + +       l    g t+i+ thh     +  
  MMETSP1137-20121227|7519_1  720 AIIGVCGPVGCGKTTLLSSILGDVPRVAGRAVVRGEIAFCAQEPWIQNISL--RDNVLFGRP-MDE--ALYARV----ISACALEXDLLALADGDATEIGERGLNLSGGQKARVALARACYARADTYLLDDVLSAVDAEVGQHLMTKCiagLLREWGATVIFVTHHTHWLHMCD 884 
                  344445556666666666666666666666666665555555555554443..455665542.222..234433....333344444444444445555566666666666666666666666666666666666665544333322101112234666666666655554444 PP

  == domain 2    score: 44.4 bits;  conditional E-value: 9.6e-15
   TIGR01257  959 taflghngagktttlsiltgllpptsgtvlvggkdie.tnldavrqslgmcpqhnilfhhltvaehilfyaql.kgrswee.aqlemeaml..edtglhhkrneeaqdlsgglqrklsvaiafvgdakvvvldeptsgvdpysrrsiwdlllkyrsgrtiimsthhmdeadllgdriaiisqgrlycsgtplflkncfg 1152
                    ++g  gagk++ l  l  l+   sgt+ + g+di    l  +r  l + pq  +lf    +   +  + ++   + w    q  +ea +     gl    +e   +ls g ++ + ++ a++ +++v+vlde t+ vd  +   i   l    +  t++  +h +d   +  dr+ ++++gr+  +g pl+l++  g
  MMETSP1137-20121227|7519_1 1350 IGIVGRTGAGKSSVLVCLFRLVELKSGTIEIDGRDIArMPLKELRSRLSIIPQDPVLFTGT-LRYNLDPFNEFdDEHLWRTlGQCSIEAPMrqHPDGLDRPIEERGANLSMGQRQLVCMCRALLKNSRVLVLDEATASVDMDTDALIQRTLETELTQATVLTIAHRLDT-IMGNDRVVVMANGRVAETGPPLVLREKEG 1546
                  5679********************************7257******************864.44444433333033344332566666654115689***************98889999*********************9999999999888899999999999986.46679******************998665 PP

>> TIGR02633  xylG: D-xylose ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   0.0   9.4e-05    0.0057      17      65 ..     709     761 ..     703     774 .. 0.58
   2 ?    2.0   0.0      0.19        12     137     200 ..     811     876 ..     747     894 .. 0.56
   3 !   37.5   0.2   3.4e-12   2.1e-10     276     482 ..    1337    1533 ..    1323    1536 .. 0.85

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 9.4e-05
   TIGR02633  17 ldnidlklraGeivslcGenGaGkstlmkvlsgvyp....hGtydGeilfege 65 
                 l++i+l++  G i+++cG  G+Gk+tl+  + g  p         Gei f  +
  MMETSP1137-20121227|7519_1 709 LKDITLNVPRGAIIGVCGPVGCGKTTLLSSILGDVPrvagRAVVRGEIAFCAQ 761
                 66677777777777777777777777765333322311112345566666555 PP

  == domain 2    score: 2.0 bits;  conditional E-value: 0.19
   TIGR02633 137 rpvsdlGlGqqqlveiakalnkqvrllildepsaslteketeilld.iird.lkakgvacvyishk 200
                     +l +Gq+  v +a+a   ++   +ld+  +++ ++  + l+   i   l++ g + ++++h 
  MMETSP1137-20121227|7519_1 811 ERGLNLSGGQKARVALARACYARADTYLLDDVLSAVDAEVGQHLMTkCIAGlLREWGATVIFVTHH 876
                 333445567778888888888888888888877777666655555324443145566667777765 PP

  == domain 3    score: 37.5 bits;  conditional E-value: 3.4e-12
   TIGR02633  276 vddvsfslrrGeilGvaGlvGaGrtelvqalfGaypGkfegevfldgkqvdirnpaqairagialvpedrkrdGivpvlgvGk.nitlavlkkfakksrideaaelkaieeeikrlkvktaspdlpi.arlsGGnqqkavlakllllnprvlildeptrGvdvGakyeiyklinqlaqeGvaiivvsselaevlGlsdrvlvigeGklk 482 
                  +dd+ + +   e +G+ G  GaG++ ++ +lf   + k  g + +dg++++ r p++ +r++++++p+d       pvl  G     l  +++f    ++  +  + +ie+ +++       p     a+ls G++q   +++ ll n rvl+lde t  vd+ + + i + +++   +  +++ ++  l  ++G  drv+v+ +G++ 
  MMETSP1137-20121227|7519_1 1337 LDDMYLDVAPCEKIGIVGRTGAGKSSVLVCLFRLVELK-SGTIEIDGRDIA-RMPLKELRSRLSIIPQD-------PVLFTGTlRYNLDPFNEFDD-EHLWRTLGQCSIEAPMRQHPDGLDRPIEERgANLSMGQRQLVCMCRALLKNSRVLVLDEATASVDMDTDALIQRTLETELTQ-ATVLTIAHRLDTIMG-NDRVVVMANGRVA 1533
                  58888889999*********************999876.799*******96.99*************99.......55555541456777777765.567778889999999999888888887654278****************************************988765554.3678899*******9.7*********985 PP

>> TIGR02323  CP_lyasePhnK: phosphonate C-P lyase system protein PhnK
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.5   0.2    0.0043      0.26      27      58 ..     719     750 ..     706     909 .. 0.65
   2 !   30.0   1.3   1.2e-09   7.2e-08      24     225 ..    1344    1541 ..    1339    1549 .. 0.79

  Alignments for each domain:
  == domain 1    score: 8.5 bits;  conditional E-value: 0.0043
   TIGR02323  27 GevlgivGesGsGkstllkalaarlladaGev 58 
                 G ++g+ G  G Gk+tll+++ + +   aG +
  MMETSP1137-20121227|7519_1 719 GAIIGVCGPVGCGKTTLLSSILGDVPRVAGRA 750
                 67777777777777777777777666666554 PP

  == domain 2    score: 30.0 bits;  conditional E-value: 1.2e-09
   TIGR02323   24 lypGevlgivGesGsGkstllkalaarlladaGevtyesrsrelellalseaerrlllrtewGlvhqnpr....GlrmevsaGanigerllavgarhyGkiraaakwlekve.idaari..kpaafsGGmqqrlqiarnlvtrprlvfmeptGGlvsvqarllllrglvrelglavii.vthlavarllaqrllvmkqGrvvesGltrvl 225 
                  + p e +givG +G+Gks++l +l   +  ++G+++ + r+    + +++  e r    +   ++ q+p      lr ++    +  +  l    r  G+   +a   ++ + +d+  i  + a++s G +q + + r+l+ + r+++++ +   v +++  l+ r+l +el  a+++ ++h   + +  +r++vm +Grv e+G   vl
  MMETSP1137-20121227|7519_1 1344 VAPCEKIGIVGRTGAGKSSVLVCLFRLVELKSGTIEIDGRD----IARMPLKELR----SRLSIIPQDPVlftgTLRYNLDPFNEFDDEHLW---RTLGQCSIEAPMRQHPDgLDR-PIeeRGANLSMGQRQLVCMCRALLKNSRVLVLDEATASVDMDTDALIQRTLETELTQATVLtIAHRLDTIMGNDRVVVMANGRVAETGPPLVL 1541
                  57999*********************9999********998....7777766544....556788898865554699999999988877765...456666666665554441333.343478899*******************9999777788999**************9886652778555567789*************977776 PP

>> TIGR00955  3a01204: pigment precursor permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.8   0.0    0.0018      0.11      37      71 ..     705     739 ..     687     752 .. 0.87
   2 !    9.6   0.0     0.001     0.064     148     225 ..     799     876 ..     794     904 .. 0.77
   3 ?    3.6   0.0      0.07       4.3      21     107 ..    1317    1403 ..    1301    1413 .. 0.70
   4 !   14.0   0.0   5.1e-05    0.0031     163     251 ..    1453    1538 ..    1447    1542 .. 0.81

  Alignments for each domain:
  == domain 1    score: 8.8 bits;  conditional E-value: 0.0018
   TIGR00955  37 ekellknvsGvaksGellAvlGsSGaGKtTLlnal 71 
                 + + lk+++  +  G ++ v G+ G GKtTLl+ +
  MMETSP1137-20121227|7519_1 705 MPSTLKDITLNVPRGAIIGVCGPVGCGKTTLLSSI 739
                 55679999999*********************876 PP

  == domain 2    score: 9.6 bits;  conditional E-value: 0.001
   TIGR00955 148 lgLrkcadtrigvpgrvkglSgGerkRlalaselltdPilLfcDEPTsGLDsfsaasvv.kvLkkla.qkgktviltiHQ 225
                 l L +   t ig  g    lSgG++ R+ala          ++D+  s  D+   ++++ k + +l  + g tvi + H 
  MMETSP1137-20121227|7519_1 799 LALADGDATEIGERGL--NLSGGQKARVALARACYARADTYLLDDVLSAVDAEVGQHLMtKCIAGLLrEWGATVIFVTHH 876
                 78999999****7775..9*********************************9998876366776541569999988885 PP

  == domain 3    score: 3.6 bits;  conditional E-value: 0.07
   TIGR00955   21 kllvkrleealarkkpekellknvsGvaksGellAvlGsSGaGKtTLlnalafrsekglkvsgdvllnGekvea...kemraisayvqqd 107 
                  + ++k++  +++ + +  ++l ++   + + e + ++G  GaGK+  l  l      +lk  g++ ++G+ + +   ke+r + + + qd
  MMETSP1137-20121227|7519_1 1317 RGQIKFTAVTMCYRPGLPNVLDDMYLDVAPCEKIGIVGRTGAGKSSVLVCLFRLV--ELKS-GTIEIDGRDIARmplKELRSRLSIIPQD 1403
                  5566666667777777777788888888899999************998885544..4554.6799999987752225555555666555 PP

  == domain 4    score: 14.0 bits;  conditional E-value: 5.1e-05
   TIGR00955  163 rvkglSgGerkRlalaselltdPilLfcDEPTsGLDsfsaasvvkvLkklaqkgktviltiHQPsselfelfdkiillaeGrvvylGsp 251 
                  r   lS G+r+ + +   ll++  +L++DE T++ D  + a + ++L+   ++  t +lti     +++ + d+++++a+Grv+ +G p
  MMETSP1137-20121227|7519_1 1453 RGANLSMGQRQLVCMCRALLKNSRVLVLDEATASVDMDTDALIQRTLETELTQ-AT-VLTIAHRLDTIMGN-DRVVVMANGRVAETGPP 1538
                  4558********************************98888888888753333.34.55665557788876.***********998876 PP

>> TIGR00630  uvra: excinuclease ABC subunit A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.6   0.0   0.00081      0.05     622     655 ..     708     741 ..     702     759 .. 0.88
   2 ?    5.3   0.0     0.015      0.94     822     898 ..     809     884 ..     798     897 .. 0.73
   3 ?    3.7   0.0     0.049         3     828     903 ..    1456    1527 ..    1449    1537 .. 0.82

  Alignments for each domain:
  == domain 1    score: 9.6 bits;  conditional E-value: 0.00081
   TIGR00630 622 nlkdidvsiplglltvitGvsgsGkstLindiLv 655
                  lkdi++++p g ++ + G+ g Gk tL+  iL 
  MMETSP1137-20121227|7519_1 708 TLKDITLNVPRGAIIGVCGPVGCGKTTLLSSILG 741
                 699**************************99985 PP

  == domain 2    score: 5.3 bits;  conditional E-value: 0.015
   TIGR00630 822 lGqpattLsGGeaqrvkLakeLskrstgktlyilDePttGLhfdDikkLle..vlqrlvdkGntvvviehnldviksaD 898
                 +G+    LsGG   rv La+   +r+     y+lD+    +  +  ++L++  +   l + G tv+ + h  + ++++D
  MMETSP1137-20121227|7519_1 809 IGERGLNLSGGQKARVALARACYARAD---TYLLDDVLSAVDAEVGQHLMTkcIAGLLREWGATVIFVTHHTHWLHMCD 884
                 677777888888888888888877765...4888888888888877888754344456677888888888777766666 PP

  == domain 3    score: 3.7 bits;  conditional E-value: 0.049
   TIGR00630  828 tLsGGeaqrvkLakeLskrstgktlyilDePttGLhfdDikkLlevlqrlvdkGntvvviehnldviksaDyiidl 903 
                   Ls G  q v +++ L k+s+   + +lDe t+ + +d    L++   +   +  tv+ i h ld i   D ++ +
  MMETSP1137-20121227|7519_1 1456 NLSMGQRQLVCMCRALLKNSR---VLVLDEATASVDMD-TDALIQRTLETELTQATVLTIAHRLDTIMGNDRVVVM 1527
                  689999999999999998764...789******99985.66777666556666789***********999998855 PP

>> TIGR00231  small_GTP: small GTP-binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.0   0.0   0.00095     0.058       6      26 ..     722     742 ..     718     750 .. 0.90
   2 ?    6.9   0.1     0.017         1       4      20 ..    1348    1364 ..    1346    1378 .. 0.88

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 0.00095
   TIGR00231   6 ivivGhvdvGKstLlnsllkn 26 
                 i++ G v++GK+tLl+s+l++
  MMETSP1137-20121227|7519_1 722 IGVCGPVGCGKTTLLSSILGD 742
                 99****************985 PP

  == domain 2    score: 6.9 bits;  conditional E-value: 0.017
   TIGR00231    4 ikivivGhvdvGKstLl 20  
                   ki+ivG+ ++GKs+ l
  MMETSP1137-20121227|7519_1 1348 EKIGIVGRTGAGKSSVL 1364
                  69************988 PP

>> TIGR00101  ureG: urease accessory protein UreG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.4   0.0   0.00073     0.044       4      38 ..     722     756 ..     720     770 .. 0.84
   2 ?    2.6   0.0      0.37        23       3      28 ..    1349    1374 ..    1340    1410 .. 0.71

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 0.00073
   TIGR00101   4 igvagpvgsgktaliealtrelakkydlavitndi 38 
                 igv+gpvg+gkt+l+ ++  ++ +    av+  +i
  MMETSP1137-20121227|7519_1 722 IGVCGPVGCGKTTLLSSILGDVPRVAGRAVVRGEI 756
                 9**************99988887777777776655 PP

  == domain 2    score: 2.6 bits;  conditional E-value: 0.37
   TIGR00101    3 kigvagpvgsgktaliealtrelakk 28  
                  kig++g  g+gk++++  l r ++ k
  MMETSP1137-20121227|7519_1 1349 KIGIVGRTGAGKSSVLVCLFRLVELK 1374
                  89999999999999999888877654 PP

>> TIGR03819  heli_sec_ATPase: helicase/secretion neighborhood ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.5   0.0    0.0017      0.11     182     204 ..     723     745 ..     699     763 .. 0.80
   2 ?    2.6   0.0      0.22        14     181     204 ..    1350    1373 ..    1329    1384 .. 0.85

  Alignments for each domain:
  == domain 1    score: 9.5 bits;  conditional E-value: 0.0017
   TIGR03819 182 lvsGgtGsGkttLLsalLalvae 204
                  v G  G GkttLLs++L+ v++
  MMETSP1137-20121227|7519_1 723 GVCGPVGCGKTTLLSSILGDVPR 745
                 48999**************9975 PP

  == domain 2    score: 2.6 bits;  conditional E-value: 0.22
   TIGR03819  181 llvsGgtGsGkttLLsalLalvae 204 
                  + ++G tG+Gk ++L +l  lv+ 
  MMETSP1137-20121227|7519_1 1350 IGIVGRTGAGKSSVLVCLFRLVEL 1373
                  5599**************999875 PP

>> TIGR02546  III_secr_ATP: type III secretion apparatus H+-transporting two-sector ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.1   0.1    0.0066      0.41     140     167 ..     713     740 ..     707     748 .. 0.88
   2 ?    2.8   0.0      0.14       8.5     139     168 ..    1340    1369 ..    1306    1380 .. 0.86

  Alignments for each domain:
  == domain 1    score: 7.1 bits;  conditional E-value: 0.0066
   TIGR02546 140 lltvgeGqRiGifaeaGvGkstLlsmia 167
                  l v +G  iG+ +  G+Gk+tLls+i 
  MMETSP1137-20121227|7519_1 713 TLNVPRGAIIGVCGPVGCGKTTLLSSIL 740
                 57788999*****************996 PP

  == domain 2    score: 2.8 bits;  conditional E-value: 0.14
   TIGR02546  139 glltvgeGqRiGifaeaGvGkstLlsmiar 168 
                    l v+   +iGi + +G+Gks++l  + r
  MMETSP1137-20121227|7519_1 1340 MYLDVAPCEKIGIVGRTGAGKSSVLVCLFR 1369
                  457888999**************9987765 PP

>> TIGR00956  3a01205: pleiotropic drug resistance family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.0       0.3        18      70     111 ..     702     743 ..     691     761 .. 0.69
   2 ?    3.0   0.0     0.051       3.1     199     243 ..     806     849 ..     779     873 .. 0.80
   3 ?   -3.6   0.0       5.1   3.1e+02     786     809 ..    1344    1367 ..    1328    1382 .. 0.63
   4 ?    3.1   0.0     0.047       2.9     210     288 ..    1457    1531 ..    1453    1538 .. 0.76

  Alignments for each domain:
  == domain 1    score: 0.4 bits;  conditional E-value: 0.3
   TIGR00956  70 eskkfdilkdvdglikpgelvvvLGrPgsGcstlLksiaskt 111
                 e ++ + lkd+   +  g ++ v G+ g G++tlL si +++
  MMETSP1137-20121227|7519_1 702 EASMPSTLKDITLNVPRGAIIGVCGPVGCGKTTLLSSILGDV 743
                 555556666666666677777777777777777777776665 PP

  == domain 2    score: 3.0 bits;  conditional E-value: 0.051
   TIGR00956 199 ntkvGndlvRG..vsGGerkRvsiaevlvakakiqcwDnatrGLDsa 243
                  t++G+   RG  +sGG++ Rv++a ++ a+a ++++D++   +D+ 
  MMETSP1137-20121227|7519_1 806 ATEIGE---RGlnLSGGQKARVALARACYARADTYLLDDVLSAVDAE 849
                 556665...44227*************************99988876 PP

  == domain 3    score: -3.6 bits;  conditional E-value: 5.1
   TIGR00956  786 vkPGkltALmGasGAGkttLlnvL 809 
                  v P +   ++G  GAGk  +l +L
  MMETSP1137-20121227|7519_1 1344 VAPCEKIGIVGRTGAGKSSVLVCL 1367
                  445555555666666666666665 PP

  == domain 4    score: 3.1 bits;  conditional E-value: 0.047
   TIGR00956  210 vsGGerkRvsiaevlvakakiqcwDnatrGLDsatalefvkalktsaeilkatalvaiyqasqdayelFdkvvvlyeGk 288 
                  +s G+r+ v +  +l+ +++++++D+at  +D  t   + ++l t  e+++at+l +i     d+    d+vvv+ +G+
  MMETSP1137-20121227|7519_1 1457 LSMGQRQLVCMCRALLKNSRVLVLDEATASVDMDTDALIQRTLET--ELTQATVL-TIAHR-LDTIMGNDRVVVMANGR 1531
                  58899***************************9999989888876..45555554.44333.35555668888888887 PP

>> TIGR01420  pilT_fam: twitching motility protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   0.0    0.0034      0.21     109     146 ..     704     743 ..     696     753 .. 0.80
   2 ?    1.0   0.0       0.7        43     109     142 ..    1332    1367 ..    1323    1376 .. 0.76

  Alignments for each domain:
  == domain 1    score: 8.6 bits;  conditional E-value: 0.0034
   TIGR01420 109 glpevlkela.ekkrGlil.vtGptGsGKsttlAslidyi 146
                  +p++lk+++ + +rG i+ v Gp G GK+t l s++  +
  MMETSP1137-20121227|7519_1 704 SMPSTLKDITlNVPRGAIIgVCGPVGCGKTTLLSSILGDV 743
                 678999998614579987769**************99766 PP

  == domain 2    score: 1.0 bits;  conditional E-value: 0.7
   TIGR01420  109 glpevlkelaekk..rGlilvtGptGsGKsttlAsl 142 
                  glp+vl ++         i ++G tG+GKs  l  l
  MMETSP1137-20121227|7519_1 1332 GLPNVLDDMYLDVapCEKIGIVGRTGAGKSSVLVCL 1367
                  6778887776543115568899********999876 PP

>> TIGR00750  lao: LAO/AO transport system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   0.1     0.013      0.82      23      58 ..     708     743 ..     698     756 .. 0.81
   2 ?    3.3   0.0      0.13         8      23      54 ..    1336    1367 ..    1324    1381 .. 0.81

  Alignments for each domain:
  == domain 1    score: 6.5 bits;  conditional E-value: 0.013
   TIGR00750  23 llkrilpktGrahvvGltGvPGaGkstlveklieel 58 
                  lk i+ +  r  ++G+ G  G Gk tl++ +  ++
  MMETSP1137-20121227|7519_1 708 TLKDITLNVPRGAIIGVCGPVGCGKTTLLSSILGDV 743
                 5778888889999****************9876555 PP

  == domain 2    score: 3.3 bits;  conditional E-value: 0.13
   TIGR00750   23 llkrilpktGrahvvGltGvPGaGkstlvekl 54  
                  +l+ ++ +    + +G+ G  GaGks ++  l
  MMETSP1137-20121227|7519_1 1336 VLDDMYLDVAPCEKIGIVGRTGAGKSSVLVCL 1367
                  67777888888899************998665 PP

>> TIGR00152  TIGR00152: dephospho-CoA kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   0.2     0.064       3.9       1      18 [.     721     738 ..     721     744 .. 0.88
   2 ?    4.9   0.0     0.074       4.5       2      19 ..    1350    1367 ..    1349    1400 .. 0.87

  Alignments for each domain:
  == domain 1    score: 5.1 bits;  conditional E-value: 0.064
   TIGR00152   1 iigltGgigsGKstvaki 18 
                 iig+ G +g+GK+t++  
  MMETSP1137-20121227|7519_1 721 IIGVCGPVGCGKTTLLSS 738
                 8*************9865 PP

  == domain 2    score: 4.9 bits;  conditional E-value: 0.074
   TIGR00152    2 igltGgigsGKstvakil 19  
                  ig++G+ g GKs+v+  l
  MMETSP1137-20121227|7519_1 1350 IGIVGRTGAGKSSVLVCL 1367
                  9*************9776 PP

>> TIGR02012  tigrfam_recA: protein RecA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   0.0    0.0022      0.14      52      87 ..     716     751 ..     702     770 .. 0.85

  Alignments for each domain:
  == domain 1    score: 9.3 bits;  conditional E-value: 0.0022
   TIGR02012  52 lpkGriieiyGpessGkttlalhviaeaqkaggvaa 87 
                 +p+G ii + Gp   Gkttl   ++ ++ +  g a+
  MMETSP1137-20121227|7519_1 716 VPRGAIIGVCGPVGCGKTTLLSSILGDVPRVAGRAV 751
                 8************************99999888754 PP

>> TIGR00602  rad24: checkpoint protein rad24
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   0.3    0.0085      0.52     104     127 ..     713     736 ..     705     742 .. 0.75

  Alignments for each domain:
  == domain 1    score: 6.5 bits;  conditional E-value: 0.0085
   TIGR00602 104 vLeskkkriLLitGPsGCgKsTvi 127
                  L++ +  i+ ++GP GCgK+T +
  MMETSP1137-20121227|7519_1 713 TLNVPRGAIIGVCGPVGCGKTTLL 736
                 56664455899***********76 PP

>> TIGR00618  sbcc: exonuclease SbcC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.1     0.027       1.7      28      47 ..     720     739 ..     709     747 .. 0.86
   2 ?   -0.4   0.0      0.69        42      32      44 ..    1352    1364 ..    1343    1366 .. 0.89

  Alignments for each domain:
  == domain 1    score: 4.3 bits;  conditional E-value: 0.027
   TIGR00618  28 klfvicGktGaGKtsLldAI 47 
                  +  +cG+ G GKt+Ll  I
  MMETSP1137-20121227|7519_1 720 AIIGVCGPVGCGKTTLLSSI 739
                 57779************887 PP

  == domain 2    score: -0.4 bits;  conditional E-value: 0.69
   TIGR00618   32 icGktGaGKtsLl 44  
                  i G+tGaGK+s+l
  MMETSP1137-20121227|7519_1 1352 IVGRTGAGKSSVL 1364
                  89*********87 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1558 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       250  (0.0609459); expected 82.0 (0.02)
Passed bias filter:                      186  (0.0453437); expected 82.0 (0.02)
Passed Vit filter:                       110  (0.0268162); expected 4.1 (0.001)
Passed Fwd filter:                        67  (0.0163335); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              67  [number of targets reported over threshold]
# CPU time: 3.70u 0.25s 00:00:03.95 Elapsed: 00:00:03.47
# Mc/sec: 592.62
//
Query:       MMETSP1137-20121227|7520_1  [L=538]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (538 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       154  (0.0375427); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.16s 00:00:00.53 Elapsed: 00:00:00.88
# Mc/sec: 806.93
//
Query:       MMETSP1137-20121227|7521_1  [L=270]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0001   19.3   0.1    0.00019   18.4   0.1    1.4  1  TIGR00536 hemK_fam: methyltransferase, HemK family
    0.00017   18.9   0.0    0.00024   18.4   0.0    1.1  1  TIGR00406 prmA: ribosomal protein L11 methyltransferase
    0.00023   18.5   0.1    0.00037   17.8   0.1    1.3  1  TIGR03534 RF_mod_PrmC: protein-(glutamine-N5) methyltransferase, release factor-specific
     0.0047   14.1   0.0     0.0063   13.7   0.0    1.1  1  TIGR01983 UbiG: 3-demethylubiquinone-9 3-O-methyltransferase
     0.0079   14.3   0.0      0.012   13.7   0.0    1.3  1  TIGR02469 CbiT: precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit
  ------ inclusion threshold ------
      0.011   12.7   0.0      0.017   12.1   0.0    1.2  1  TIGR00452 TIGR00452: putative methyltransferase


Domain annotation for each model (and alignments):
>> TIGR00536  hemK_fam: methyltransferase, HemK family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.1   2.8e-07   0.00019     116     173 ..     100     155 ..      92     171 .. 0.78

  Alignments for each domain:
  == domain 1    score: 18.4 bits;  conditional E-value: 2.8e-07
   TIGR00536 116 khilDlgtGsGcIalalAleipnaeviavDistdalavaeeNaeklkleerveliqsn 173
                 k +++lg GsG+ +l++A+  +   v   D ++dal ++e+N++ ++l++    ++  
  MMETSP1137-20121227|7521_1 100 KSVVELGAGSGAAGLTCAALGARQAV-LTD-MPDALPLIEHNVRANQLHGCSVTVHAC 155
                 579***************98885555.456.8****************9854444444 PP

>> TIGR00406  prmA: ribosomal protein L11 methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.0   3.6e-07   0.00024     159     255 ..      98     208 ..      69     212 .. 0.69

  Alignments for each domain:
  == domain 1    score: 18.4 bits;  conditional E-value: 3.6e-07
   TIGR00406 159 kdkkviDvGcGSGiLsiaalklgaakvvavDiDplavesarkNlelNqvsdllqvklen......leqkie.....gkaDviva.Nil....AevikellsqivrLvkegGll 255
                 ++k+v+++G+GSG  +++ + lga+++v  D+ p a+    +N++ Nq++     +         + q++e     g +Dv++a  ++    A+v+ +l+++  rL + +  l
  MMETSP1137-20121227|7521_1  98 RGKSVVELGAGSGAAGLTCAALGARQAVLTDM-PDALPLIEHNVRANQLHGCSVTVHACtwgneaHLQQVErladgGAFDVVLAcEVIykqsADVLEQLAATQQRLAHTQ-SL 208
                 469****************************8.77888888999999988654433332344556444444222225678887623435666889999998888887766.44 PP

>> TIGR03534  RF_mod_PrmC: protein-(glutamine-N5) methyltransferase, release factor-specific
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.1   5.4e-07   0.00037      90     161 ..     100     179 ..      85     182 .. 0.78

  Alignments for each domain:
  == domain 1    score: 17.8 bits;  conditional E-value: 5.4e-07
   TIGR03534  90 lkvlDlgtGsGaIalalakelpdakviavDiseeAlkvarkNakrlglke..veflksdl........lealeekgkfdliv 161
                  +v++lg+GsGa +l+ a+     + +++D+ ++Al + ++N+++++l+   v+++   +        +e l + g fd+++
  MMETSP1137-20121227|7521_1 100 KSVVELGAGSGAAGLTCAAL-GARQAVLTDM-PDALPLIEHNVRANQLHGcsVTVHACTWgneahlqqVERLADGGAFDVVL 179
                 48***************987.5566777786.89**************9999999999995544433333336666677765 PP

>> TIGR01983  UbiG: 3-demethylubiquinone-9 3-O-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   0.0   9.2e-06    0.0063      47     137 ..      96     196 ..      78     213 .. 0.69

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 9.2e-06
   TIGR01983  47 kleglkvlDvGcG...gGllseslarlgaevt....giDlseelievAklhakkdplk....kieyelksveelaeeekesfDvvlamEvlEH.vadleeilk 137
                  ++g++v+++G+G   +Gl + +l+ ++a+ t    ++ l e+++++ +lh  +  ++      e +l++ve la+    +fDvvla Ev+    ad+ e l 
  MMETSP1137-20121227|7521_1  96 LVRGKSVVELGAGsgaAGLTCAALGARQAVLTdmpdALPLIEHNVRANQLHGCSVTVHactwGNEAHLQQVERLADG--GAFDVVLACEVIYKqSADVLEQLA 196
                 567999999999933336788888777777552222566789999999***99999994444445577899999887..89*********9531334444444 PP

>> TIGR02469  CbiT: precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   0.0   1.8e-05     0.012      18      96 ..      97     173 ..      87     195 .. 0.81

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 1.8e-05
   TIGR02469  18 kkgdvllDiGaGtGsvtieaarlvpkgrvyaierneealelieeNlrrfgvsnieivegdapkaeedsleeadavfvgG 96 
                  +g+ +++ GaG+G  ++  a l  +     +   ++al lie+N+r+++++   +      + +e+ l+++++   gG
  MMETSP1137-20121227|7521_1  97 VRGKSVVELGAGSGAAGLTCAALGARQA--VLTDMPDALPLIEHNVRANQLHGCSVTVHACTWGNEAHLQQVERLADGG 173
                 568899*************999988855..56789**************777766666556677777788888877666 PP

>> TIGR00452  TIGR00452: putative methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   2.5e-05     0.017     120     223 ..      97     210 ..      79     217 .. 0.72

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 2.5e-05
   TIGR00452 120 lkgrtildvGcgsGyylfrmvgeGaklvvGid.ptelvlkqfeavr.klldndkraillplG.......ieqlqelk...afdtvfslGvlyhrks.plealkqlkdqlvkeGelvl 223
                 ++g+ ++++G gsG         Ga+ +v  d p  l l + ++ + +l +    ++  + G       +e l   +   afd+v++  v+y++ +  le+l + +++l +   l+l
  MMETSP1137-20121227|7521_1  97 VRGKSVVELGAGSGAAGLTCAALGARQAVLTDmPDALPLIEHNVRAnQLHGCSVTVHACTWGneahlqqVERL---AdggAFDVVLACEVIYKQSAdVLEQLAATQQRLAHTQSLIL 210
                 5789999999999999999999999988888867777777777655145566777777777722221124444...3555************9876269*****9999999988887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (270 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       115  (0.0280351); expected 82.0 (0.02)
Passed bias filter:                      105  (0.0255973); expected 82.0 (0.02)
Passed Vit filter:                        25  (0.00609459); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.26u 0.16s 00:00:00.42 Elapsed: 00:00:00.43
# Mc/sec: 828.77
//
Query:       MMETSP1137-20121227|7522_1  [L=331]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (331 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        64  (0.0156021); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.16s 00:00:00.40 Elapsed: 00:00:00.36
# Mc/sec: 1213.57
//
Query:       MMETSP1137-20121227|7523_1  [L=76]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (76 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        18  (0.0043881); expected 82.0 (0.02)
Passed bias filter:                       17  (0.00414432); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.15s 00:00:00.26 Elapsed: 00:00:00.26
# Mc/sec: 385.81
//
Query:       MMETSP1137-20121227|7524_1  [L=201]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (201 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       110  (0.0268162); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.09s 00:00:00.28 Elapsed: 00:00:00.28
# Mc/sec: 914.82
//
Query:       MMETSP1137-20121227|7525_1  [L=299]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (299 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        62  (0.0151146); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.13s 00:00:00.36 Elapsed: 00:00:00.57
# Mc/sec: 680.43
//
Query:       MMETSP1137-20121227|7526_1  [L=348]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   1.4e-119  397.9   0.1   1.6e-119  397.7   0.1    1.0  1  TIGR01241 FtsH_fam: ATP-dependent metallopeptidase HflB
    5.9e-38  128.7   0.2    8.4e-38  128.3   0.1    1.2  1  TIGR01242 26Sp45: 26S proteasome subunit P45 family
    3.3e-33  112.7   0.0    3.5e-33  112.7   0.0    1.1  1  TIGR01243 CDC48: AAA family ATPase, CDC48 subfamily
    7.8e-15   52.4   0.1    1.1e-14   51.8   0.0    1.3  1  TIGR03689 pup_AAA: proteasome ATPase


Domain annotation for each model (and alignments):
>> TIGR01241  FtsH_fam: ATP-dependent metallopeptidase HflB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  397.7   0.1  1.5e-122  1.6e-119     167     493 ..       2     332 ..       1     335 [. 0.95

  Alignments for each domain:
  == domain 1    score: 397.7 bits;  conditional E-value: 1.5e-122
   TIGR01241 167 glgggndereqtLnqlLvemDGfetnegvivlaatnrpdvLDkaLlrPGrfDrqvvvdkPdlkgreeilkvhakkvklaeevdlkkvarrtpGfsGadlanlvneaallaarknkkevtlkeleeavdrviaGlekksrvisekekklvayheaGhalvgllvkeadkvkkvtiiprGq.alGvtlslPee...dklllskkellakiavllgGrvaeeiifg..evttGasnDlkkatkiaramvtelGmsek.lgavayeeeeeevllgkelkkekeyseetakeiDeevkriieeaykkakeilkekkeelellakeLleketiekeelke 493
                 g+gggndereqtLnq+L+emDGf++n gvivlaatnr+d+LD+aLlrPGrfDr+v vd+Pd+kgr eilkvha+ + la+e+dl  va+rt+GfsGa l+nl+neaa++aar+nk+e++ +e++ a+dr ++Gl+k +      +++lvayheaGha++gl++++ d+v+kvt+ipr + a+G+tl++P+e   ++ ++sk+ l+a++av+lgGrvaeeii+g  evttGasnDl+++ +iar+mv+++G++ k +g+  ++    e+  g++l++ ++ s ++ ++iD++v+ri+e+ay+k+ + l+e+k  l+++a++L+eketi+ +el +
  MMETSP1137-20121227|7526_1   2 GMGGGNDEREQTLNQILTEMDGFDGNSGVIVLAATNRADILDSALLRPGRFDRRVPVDLPDVKGRLEILKVHARGKPLAKELDLGIVAKRTTGFSGASLSNLLNEAAIVAARTNKTEISYTEVDYAIDRATVGLQKTTGXXXXXRQRLVAYHEAGHAVMGLVTPDYDMVTKVTVIPRTNgAGGFTLFTPSEerlESGMYSKRYLEAQLAVALGGRVAEEIIYGedEVTTGASNDLQQVRNIARRMVAQWGFAMKeMGEAPVA---WETPEGNGLMQPRSASVSMESDIDKQVQRIVESAYNKCYSALSENKALLDAVANTLIEKETIDYDELLT 332
                 69*********************************************************************************************************************************************************************************9**********955556799************************999************************986426655554...3457788899999**************************************************999866 PP

>> TIGR01242  26Sp45: 26S proteasome subunit P45 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  128.3   0.1   8.2e-41   8.4e-38     237     362 ..       5     130 ..       2     132 .. 0.97

  Alignments for each domain:
  == domain 1    score: 128.3 bits;  conditional E-value: 8.2e-41
   TIGR01242 237 sGdrevqrtllqllaeldGfdprgnvkviaatnrldildpallrpGrfdrlievplpdleGrleilkihtrkmklaedvdleelaklteGasGadlkaivteaGmfaireerdkvtmedflkavek 362
                 +G+ e ++tl q+l+e+dGfd    v v+aatnr dild allrpGrfdr + v lpd++Grleilk+h+r   la+++dl  +ak t G+sGa l  +  ea + a r ++++++ +++  a+++
  MMETSP1137-20121227|7526_1   5 GGNDEREQTLNQILTEMDGFDGNSGVIVLAATNRADILDSALLRPGRFDRRVPVDLPDVKGRLEILKVHARGKPLAKELDLGIVAKRTTGFSGASLSNLLNEAAIVAARTNKTEISYTEVDYAIDR 130
                 799999***************************************************************************************************************999999986 PP

>> TIGR01243  CDC48: AAA family ATPase, CDC48 subfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  112.7   0.0   3.4e-36   3.5e-33     572     677 ..      11     116 ..       3     259 .. 0.91

  Alignments for each domain:
  == domain 1    score: 112.7 bits;  conditional E-value: 3.4e-36
   TIGR01243 572 drivnqllteldgleensdvvviaatnrpdildpallrpgrldrlilvpapdeearleifkihtrslplaedvdleelakktegytgadieavvreaalaalresv 677
                 ++ +nq+lte+dg++ ns+v+v+aatnr dild allrpgr+dr + v  pd + rlei+k+h+r  pla+++dl  +ak+t g++ga +  +  eaa+ a r   
  MMETSP1137-20121227|7526_1  11 EQTLNQILTEMDGFDGNSGVIVLAATNRADILDSALLRPGRFDRRVPVDLPDVKGRLEILKVHARGKPLAKELDLGIVAKRTTGFSGASLSNLLNEAAIVAARTNK 116
                 5789*************************************************************************************************99654 PP

>> TIGR03689  pup_AAA: proteasome ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.8   0.0   1.1e-17   1.1e-14     310     388 ..       6      83 ..       1     132 [. 0.77

  Alignments for each domain:
  == domain 1    score: 51.8 bits;  conditional E-value: 1.1e-17
   TIGR03689 310 ssdvettvvPqllaeldGveslenviviGasnredlidPailrPGrldvkirierPdaeaaadilakyltedlPleedl 388
                   d     + q+l+e+dG +  + viv+ a+nr d++d a+lrPGr+d ++ ++ Pd ++  +il+ +   + Pl+++l
  MMETSP1137-20121227|7526_1   6 GNDEREQTLNQILTEMDGFDGNSGVIVLAATNRADILDSALLRPGRFDRRVPVDLPDVKGRLEILKVHARGK-PLAKEL 83 
                 5566666789*******************************************************9886543.554443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (348 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       121  (0.0294978); expected 82.0 (0.02)
Passed bias filter:                      100  (0.0243784); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.32u 0.12s 00:00:00.44 Elapsed: 00:00:00.49
# Mc/sec: 937.39
//
Query:       MMETSP1137-20121227|7527_1  [L=338]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.8e-05   21.0   0.4    0.00017   18.5   0.3    1.9  1  TIGR02037 degP_htrA_DO: peptidase Do
    0.00075   16.3   0.0    0.00096   15.9   0.0    1.1  1  TIGR00054 TIGR00054: RIP metalloprotease RseP
     0.0021   15.2   7.4     0.0032   14.6   5.1    1.2  1  TIGR00599 rad18: DNA repair protein rad18
     0.0045   13.8   0.0       0.62    6.8   0.0    2.1  2  TIGR02860 spore_IV_B: stage IV sporulation protein B


Domain annotation for each model (and alignments):
>> TIGR02037  degP_htrA_DO: peptidase Do
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.3   1.7e-07   0.00017     260     422 ..     101     252 ..      81     265 .. 0.72

  Alignments for each domain:
  == domain 1    score: 18.5 bits;  conditional E-value: 1.7e-07
   TIGR02037 260 GalvaevlkgspAekaGlkaGDvilkvngkkiksaadlreaigtlkpgkkvklkilRkgkekeikvtlkeaeeekasseksekkellglsvadlseeaakk.kkskeekkgvvvtkvkkkspaakaglkkgdvilsvnqkevksvaelkkvleeakkkervlll 422
                  a+v ++  +s+A++a ++  Dv+++++g ++ksa++  + i+++     ++lki R+     ik   +     + + +  ++k +  l++++  ++++ +   + ++++ ++v++v+  s   ++ l  gd +l vn++ v++ a+  ++++ a  +  v+l 
  MMETSP1137-20121227|7527_1 101 QAVVFSIRADSSAARANINCLDVVTEIEGVRVKSAHHAINLIHNAVGP--LRLKI-RQCPLYLIKAAAR----IQRAWR--QSKAIFRLELHKHCKTSKFRlVFDPTVSNAAIVSEVN-PSLVPQNNLSVGDAVLFVNNTLVTTPAQAAQAIRDAGTN--VVLI 252
                 58999*********************************9999986543..44443.4443333433333....222222..2344566777777767777744555666666666666.668999999999999999999999999999999966533..3333 PP

>> TIGR00054  TIGR00054: RIP metalloprotease RseP
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   9.4e-07   0.00096      94     260 ..      68     258 ..      56     280 .. 0.79

  Alignments for each domain:
  == domain 1    score: 15.9 bits;  conditional E-value: 9.4e-07
   TIGR00054  94 qkviiiaagplanlifailvyi.lvsligvknfevkkvieeldknsialeakiedgdeilsvdgkkikdfkdvrkqlaekagevsveila................erenitleeeke..........lkelgpkielvlsdvvdnspaekaGlkeGDkilkidgeklkswrdlvklvkenpeksleikveRng 260
                 ++ +i+ +++ a l+   ++++  +   g+     + v+ ++ ++s+a++a+i+  d++ +++g ++k+ +++ +++ +++g++ ++i +                ++ + ++  e+           + + + ++ +++s+v +     +  l  GD +l ++++ ++   +  +++++   +++ i ++ ++
  MMETSP1137-20121227|7527_1  68 DRHVILHKEKRAVLVGLNFAICeSLLPPGFS--LNQAVVFSIRADSSAARANINCLDVVTEIEGVRVKSAHHAINLIHNAVGPLRLKIRQcplylikaaariqrawRQSKAIFRLELHkhcktskfrlVFDPTVSNAAIVSEVNPSLV-PQNNLSVGDAVLFVNNTLVTTPAQAAQAIRDAGTNVVLICMKAQD 258
                 5666777777666666666655555555666..56789999***********************************************778999998888887776555555555544567777778766667778899999966544.4478***************************99998888877665 PP

>> TIGR00599  rad18: DNA repair protein rad18
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   5.1   3.1e-06    0.0032      29      71 ..     283     327 ..     268     331 .. 0.92

  Alignments for each domain:
  == domain 1    score: 14.6 bits;  conditional E-value: 3.1e-06
   TIGR00599  29 ChvCkdffkaPv..ltsCsHtFCslCiRrcLseepkCPlCraedq 71 
                 C vC + + +Pv  +  C+H FC+ C  +  +    CP+Cra+ +
  MMETSP1137-20121227|7527_1 283 CPVCFEPLVTPVewIAGCGHCFCAKCHQKSSKFSDACPICRATLR 327
                 99*********9889**************************9865 PP

>> TIGR02860  spore_IV_B: stage IV sporulation protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.8   0.0   0.00061      0.62     124     166 ..     111     152 ..     101     179 .. 0.86
   2 !    5.1   0.0    0.0019         2     129     171 ..     216     258 ..     206     280 .. 0.78

  Alignments for each domain:
  == domain 1    score: 6.8 bits;  conditional E-value: 0.00061
   TIGR02860 124 sPaeeagiqvGDlilkvngekikeeedvaklineaggeklklt 166
                 s a++a+i+  D++++++g ++k++++  +li++a g  l+l+
  MMETSP1137-20121227|7527_1 111 SSAARANINCLDVVTEIEGVRVKSAHHAINLIHNAVG-PLRLK 152
                 67889***************************99864.34444 PP

  == domain 2    score: 5.1 bits;  conditional E-value: 0.0019
   TIGR02860 129 agiqvGDlilkvngekikeeedvaklineaggeklkltikRkk 171
                  ++ vGD +l vn++ + +  + a+ i++ag++ + + +k ++
  MMETSP1137-20121227|7527_1 216 NNLSVGDAVLFVNNTLVTTPAQAAQAIRDAGTNVVLICMKAQD 258
                 5789***************************998887776543 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (338 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       163  (0.0397367); expected 82.0 (0.02)
Passed bias filter:                      125  (0.0304729); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.33u 0.15s 00:00:00.48 Elapsed: 00:00:00.50
# Mc/sec: 892.25
//
Query:       MMETSP1137-20121227|7528_1  [L=273]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.4e-51  171.5   0.9    4.8e-51  171.0   0.6    1.1  1  TIGR00401 msrA: peptide-methionine (S)-S-oxide reductase


Domain annotation for each model (and alignments):
>> TIGR00401  msrA: peptide-methionine (S)-S-oxide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  171.0   0.6   1.2e-54   4.8e-51       1     148 [.     107     252 ..     107     255 .. 0.98

  Alignments for each domain:
  == domain 1    score: 171.0 bits;  conditional E-value: 1.2e-54
   TIGR00401   1 ekitfalGCfWgveklfrkidgvektkvGylngktenPtyeevCsgdtghaevvkveydpkvvsleeLldvffevidPttanrqgnDkGtqyrsgiyalsdedekaaeaskerlqesakykkkivteiekaenfyeaeeyhqqylkkn 148
                 e +tfa+GCfWg+e +f++++gv  t vGy++g++e+Pty+evCsg+tgh+e ++v +dpk+  +  L + + +++d t  n+ gnD+Gtqyr giy ++de+ ++a++   + q+  ky+++ivte++ a+ f+ aeeyhqqyl+k 
  MMETSP1137-20121227|7528_1 107 EVATFAGGCFWGTELHFQRVPGVIATCVGYTQGNVEKPTYNEVCSGSTGHTEGIQVIFDPKECKYTTLCETLLKTVDATLLNQVGNDRGTQYRHGIYPHTDEQMEMAKQAIAEEQK--KYRRPIVTEVKMAQVFWPAEEYHQQYLEKG 252
                 579*********************************************************************************************************99999999..****************************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (273 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        87  (0.0212092); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.23u 0.12s 00:00:00.35 Elapsed: 00:00:00.36
# Mc/sec: 1000.92
//
Query:       MMETSP1137-20121227|7529_1  [L=366]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (366 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       133  (0.0324232); expected 82.0 (0.02)
Passed bias filter:                       98  (0.0238908); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.14s 00:00:00.43 Elapsed: 00:00:00.88
# Mc/sec: 548.95
//
Query:       MMETSP1137-20121227|7530_1  [L=1332]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   1.2e-203  676.7   0.0   3.6e-129  430.1   0.0    2.1  2  TIGR01652 ATPase-Plipid: phospholipid-translocating P-type ATPase, flippase
    2.4e-59  198.8   0.9    4.5e-20   69.3   0.2    6.0  6  TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC
    9.2e-19   64.9   0.0    8.4e-09   31.9   0.0    4.5  5  TIGR01517 ATPase-IIB_Ca: calcium-translocating P-type ATPase, PMCA-type
    2.7e-17   59.4   0.2    1.4e-10   37.2   1.3    3.7  3  TIGR01657 P-ATPase-V: P-type ATPase of unknown pump specificity (type V)
    1.8e-16   57.2   0.0    6.4e-05   19.0   0.0    4.5  5  TIGR01116 ATPase-IIA1_Ca: calcium-translocating P-type ATPase, SERCA-type
    9.9e-15   52.2   1.9    1.7e-06   25.0   0.0    4.1  4  TIGR01525 ATPase-IB_hvy: heavy metal translocating P-type ATPase
    1.8e-13   47.9   1.2    0.00015   18.5   0.0    4.1  4  TIGR01512 ATPase-IB2_Cd: cadmium-translocating P-type ATPase
    8.3e-12   41.5   0.0     0.0009   14.9   0.0    3.4  3  TIGR01522 ATPase-IIA2_Ca: calcium-transporting P-type ATPase, PMR1-type
    4.1e-10   35.7   0.1    0.00033   16.2   0.0    3.0  3  TIGR01523 ATPase-IID_K-Na: potassium/sodium efflux P-type ATPase, fungal-type
    4.5e-09   32.6   0.4     0.0011   14.6   0.0    3.2  4  TIGR01106 ATPase-IIC_X-K: Na,H/K antiporter P-type ATPase, alpha subunit
    1.2e-07   28.8   3.5     0.0007   16.4   0.0    3.7  4  TIGR01511 ATPase-IB1_Cu: copper-translocating P-type ATPase
    1.8e-06   25.5   1.0      3e-05   21.6   0.2    2.2  2  TIGR00338 serB: phosphoserine phosphatase SerB
    5.2e-06   22.7   1.4     0.0049   12.9   0.0    3.3  4  TIGR01647 ATPase-IIIA_H: plasma-membrane proton-efflux P-type ATPase
    0.00015   19.7   0.0     0.0021   16.0   0.0    2.4  3  TIGR01484 HAD-SF-IIB: HAD hydrolase, family IIB
     0.0012   16.3   0.1     0.0048   14.3   0.1    1.8  2  TIGR00099 Cof-subfamily: Cof-like hydrolase
     0.0039   13.1   0.1      0.032   10.1   0.0    2.3  3  TIGR01497 kdpB: K+-transporting ATPase, B subunit
  ------ inclusion threshold ------
      0.054   11.4   0.1        3.9    5.4   0.0    2.3  2  TIGR01662 HAD-SF-IIIA: HAD hydrolase, family IIIA
      0.089    8.4   1.5        0.3    6.6   0.0    2.5  4  TIGR01524 ATPase-IIIB_Mg: magnesium-translocating P-type ATPase


Domain annotation for each model (and alignments):
>> TIGR01652  ATPase-Plipid: phospholipid-translocating P-type ATPase, flippase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  430.1   0.0  1.6e-131  3.6e-129      94     703 ..      23     671 ..      14     681 .. 0.83
   2 !  238.7   4.0   9.9e-74   2.3e-71     737    1043 ..     781    1100 ..     775    1107 .. 0.94

  Alignments for each domain:
  == domain 1    score: 430.1 bits;  conditional E-value: 1.6e-131
   TIGR01652  94 akfkeikwkdlkVGdivkvkkdeeiPaDllllssseedGvcyveTknLDGEtnlKlrqaleeTkklkeekki.......kk.......lkgeieceqPnkslysfqgnlklegkakreeplsvdnvllrgctlrntkwvlgvVvytGhdtklmkNatka..psKrskiekelnlliiilfllllvlclissvaasivsd.keeksrfyleleksrnaaaegfvslltalilfssliPiSLyvslelvkvvqalfinsDlelydektdtpasvrtsnlneeLGqveyifSDKTGTLTqNkmefkkcsiagvsygkkleevkdalrkrkgskveee...........eelleelk..evtfvdeklvkklktkeeeaelieeflkaLAlChtvvpevedddeeeltyqaeSPDEaAlVkaardlGfsllertkks..isllieergeekeyeiLnvleFnSsrKRmsvivrlpdd.........ellLlcKGADsvifkrlse....esekvlektkehlekyaseGlRTLviarrelseeeYeewnekyeeA....stalk...dreekleevaeliEkeLellgaTaiEDkLqegVpetielLaeAgikiWvLTGDkvETAinigysckLlseemellvikeesldaleaveaaikkelees 703
                 a++ + +w d++ Gd+v+v + e++PaDllll+ss     c+v+Tk LDGEt++Klr a +  ++l  + ++       ++       l+g++ ceqPn+++ + +++++l g +      s dnvllrgc+lrnt+w+lg+V+  G d+k+   ++++  psK    ++ +nl+ +   lll+ lcl++s +++i+    ++ + +y e+e   +   + f++ l +++l  sliPiS+yv+ +++ +   +f+ +Dl++yde++d pa+vrt+ l e+LGqv +ifSDKTGTLT+N mef+ +  +gv+yg+  + ++ +l k +    +             +   + +   e    d ++ + l+ ++ +  +++e+l aLA+ h+v+ e   d     +  a+SPDE A+V+aa+++G+ +  r++ +  + l+ ++rge +e ++L+ + ++S+rKRmsv+vrlp             +++cKGADsv+f+rl+     ++   +e+++  l ++a+  lRTLv a+rel e   +ew+ ky+eA    s + +    +   + + +e++E  L+l gaTaiEDkLq+gVpe ++ L+eAg kiW+LTGDkv TA ni+++c++l +e   l i++e++  l+ v+ +   e++++
  MMETSP1137-20121227|7530_1  23 AEWLDGTWADVREGDVVRVDSHEAFPADLLLLRSSTGR-ECWVNTKPLDGETDMKLRLAPKVFESLLMDVDVgtdegeaAAaralpalLRGKVLCEQPNNKINDTSAEVRLAGVPP--ALASEDNVLLRGCQLRNTDWILGLVLACGPDSKVGFRQGEPmnPSKPVLSDSVVNLNLLRQALLLVPLCLLGSTVNAIIIGnYDDGQPWYRETEA--RGFGQWFLNSLSYFLLCYSLIPISFYVTRNIIFSFGRYFMSHDLTMYDEEQDEPARVRTMVLLEQLGQVSHIFSDKTGTLTSNRMEFRRAVFGGVAYGCGDTAISRSLGKANDAPRRAAplppyagttaaT---RAFVsfEEAESDASIWDVLSADDADGAALRECLVALAVNHSVMLEQVGD---AQIPSASSPDELAFVAAAEHFGLHFEARQTARgvVVLHDKARGERHEVQLLEAIAYSSDRKRMSVVVRLPPAlvasigggcADRIYCKGADSVLFERLAPvaakGQYGSQEALSDLLGEWAEVALRTLVWAKRELPE--LDEWRAKYREAfnnpSEVAAyksGEPCLITQLQEQLESGLTLQGATAIEDKLQDGVPEILADLREAGTKIWMLTGDKVGTAKNIACACNILPQEADXLEITTETFPVLADVKTTKLLEVQQT 671
                 5788889**************************99654.8*****************9987665543322221111111111122222689**********************655..556899***************************98777765559***999*********************998887766505666789998666..6666788888888888889*************************************************************************************999999977655555899998653221...222222344556677777777999999****************997555...35789*********************9987652256666777899************************988888777777779**************97665566778999999********************75..44555555555222154443223445579999**********************************************************************99777665555544444444 PP

  == domain 2    score: 238.7 bits;  conditional E-value: 9.9e-74
   TIGR01652  737 flelalkckavlcCRvsPsqKaavvklvkksl.skvtlaigdGaNDVsmiqeAdvGvGisGkEGkqAvmasDfaigqFrfLekLlLvHGrwsYkRisklilyffyknlilalilfwyslvnefsgqtlyeewllvlynvifTslPvivlGvldqdvsaslllkyPqLYkegikgkefsvkvflvwmldglyqslvifllallvlkleavvssGeved..llslgvivftalvvvvnlkialeierwnkisliaiagsilvvlifvivyseilp..........seefykaaarvlkslvfwlvllvvvlisllprftlka 1043
                  +  ++ +c+av++CR    qKa++ +++k ++  ++ laigdGaNDV+mi++ ++GvGi GkEG++Av++sDfaigqFrfL  LlLvHGr +Y+R ++   ++fy+  ++++ lf ysl+ e sg  ly +++  ++ v++T l  iv  v dqdvs++ + + P+LY   i++  +    f+ w+ +++y ++++ +l+ +++   + ++ Ge ed   + l+ + + a+v+vv+ ++ale+++w+ ++++ +++sil+ ++   ++s  +p            ef    a +++ + fwl+l+++v+++l p  +l+ 
  MMETSP1137-20121227|7530_1  781 LTAVSNSCRAVVACRARKDQKAQMLNMIKFGVpGSCCLAIGDGANDVAMIKAGHIGVGIIGKEGMEAVNNSDFAIGQFRFLRGLLLVHGRQNYRRYATFCYFMFYQSSTMVFSLFLYSLLCEASGALLYPYFIFDFFTVFYTPLALIVFSVSDQDVSKEESAHTPHLYSASIQRVYLTSSGFARWLSEAFYLAVLLAYLPAAAYGWPEKTHMGEHEDpaWSALSFTAYNAMVIVVLSRLALEVHSWTVLEVACWTLSILALVVTNLMFSYWYPvpfptvpdsqWGEFNNILAIMYSQPAFWLCLVLIVFLALAPALILDW 1100
                  667899************************76368999**********************************************************************************************************************************************************************9988888896654225678889999**********************************9999998888889999997655899999999******************99988765 PP

>> TIGR01494  ATPase_P-type: HAD ATPase, P-type, family IC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.1   0.0   4.1e-08   9.3e-06      51      93 ..      32      78 ..      23      88 .. 0.88
   2 !   40.8   0.0   9.2e-14   2.1e-11     158     236 ..     235     326 ..     231     342 .. 0.77
   3 ?   -2.4   0.0       1.1   2.5e+02     239     274 ..     417     452 ..     407     461 .. 0.74
   4 !    4.9   0.0     0.007       1.6     255     305 ..     462     524 ..     438     529 .. 0.74
   5 !   53.6   0.1   1.2e-17   2.7e-15     316     366 ..     590     640 ..     584     643 .. 0.94
   6 !   69.3   0.2     2e-22   4.5e-20     361     466 ..     788     900 ..     779     908 .. 0.86

  Alignments for each domain:
  == domain 1    score: 22.1 bits;  conditional E-value: 4.1e-08
   TIGR01494 51 dlvvGDivlvkkgekvpaDgvllsg....saevdessLtGEsnpvek 93
                d++ GD+v+v + e++paD++ll++    ++ v+++ L+GE++ +++
  MMETSP1137-20121227|7530_1 32 DVREGDVVRVDSHEAFPADLLLLRSstgrECWVNTKPLDGETDMKLR 78
                7899*******************98444459************9987 PP

  == domain 2    score: 40.8 bits;  conditional E-value: 9.2e-14
   TIGR01494 158 lktflkiilralillviaiPiaLpvavtialavgdkrla.............ilvrslnaleelgkvdvilsDKTGTLTenkmelkkvvigg 236
                 + +++   l +++l  ++iPi+++v+  i+ ++g   ++             + vr++ +le+lg+v+ i+sDKTGTLT+n+me+++ v gg
  MMETSP1137-20121227|7530_1 235 FGQWFLNSLSYFLLCYSLIPISFYVTRNIIFSFGRYFMShdltmydeeqdepARVRTMVLLEQLGQVSHIFSDKTGTLTSNRMEFRRAVFGG 326
                 667888888888999999999999998888776643332111111333333389********************************998776 PP

  == domain 3    score: -2.4 bits;  conditional E-value: 1.1
   TIGR01494 239 qsgspdekalvksakkilkvlefeserkrmsvivkk 274
                  ++spde a+v +a++   ++e  ++ + + v+++k
  MMETSP1137-20121227|7530_1 417 SASSPDELAFVAAAEHFGLHFEARQTARGVVVLHDK 452
                 5899**********9777677766666666666655 PP

  == domain 4    score: 4.9 bits;  conditional E-value: 0.007
   TIGR01494 255 ilkvlefeserkrmsvivk............kpkgkyvkGapevilervkkleekleelaseg 305
                  l+ +  +s+rkrmsv+v+            +++  y+kGa++v++er+  +++k ++ ++e+
  MMETSP1137-20121227|7530_1 462 LLEAIAYSSDRKRMSVVVRlppalvasigggCADRIYCKGADSVLFERLAPVAAKGQYGSQEA 524
                 5666778999999999999333333333333357889**********9999988877666665 PP

  == domain 5    score: 53.6 bits;  conditional E-value: 1.2e-17
   TIGR01494 316 ellGllaledplredvketieelkkagikvimlTGDnvetAkaiakelglf 366
                 +l+G++a+ed+l+++v+e+++ l++ag k++mlTGD+v tAk+ia +++++
  MMETSP1137-20121227|7530_1 590 TLQGATAIEDKLQDGVPEILADLREAGTKIWMLTGDKVGTAKNIACACNIL 640
                 799********************************************9985 PP

  == domain 6    score: 69.3 bits;  conditional E-value: 2e-22
   TIGR01494 361 kelglfarvsPeqKaeivellkk..kgevvamiGDGvNDapALkaAdVGia......isAkaaadivllddnlslvvlllkeGrktykrikklilylliknliliilllvlsvl 466
                  +  + +r   +qKa++++++k    g ++++iGDG+ND++++ka ++G++      ++A + +d+++ ++ ++l  lll++Gr++y r +++  ++++++ +++++l+++s+l
  MMETSP1137-20121227|7530_1 788 CRAVVACRARKDQKAQMLNMIKFgvPGSCCLAIGDGANDVAMIKAGHIGVGiigkegMEAVNNSDFAIGQF-RFLRGLLLVHGRQNYRRYATFCYFMFYQSSTMVFSLFLYSLL 900
                 333468****************622589**********************63333337999**********.**************************************9874 PP

>> TIGR01517  ATPase-IIB_Ca: calcium-translocating P-type ATPase, PMCA-type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.0      0.24        56     172     216 ..      31      78 ..      29     118 .. 0.85
   2 !   17.4   0.0   9.3e-07   0.00021     343     384 ..     284     325 ..     277     333 .. 0.89
   3 !    8.2   0.0   0.00057      0.13     430     518 ..     450     543 ..     442     557 .. 0.60
   4 !   31.9   0.0   3.7e-11   8.4e-09     527     591 ..     583     647 ..     577     677 .. 0.91
   5 ?   -0.6   0.0      0.26        59     629     667 ..     817     855 ..     790     904 .. 0.74

  Alignments for each domain:
  == domain 1    score: -0.6 bits;  conditional E-value: 0.24
   TIGR01517 172 advvvGDivslstGdvvpaDgvlis...GlklkiDessltGesdpikk 216
                 adv  GD+v+++  +  paD +l++   G ++ ++   l Ge d + +
  MMETSP1137-20121227|7530_1  31 ADVREGDVVRVDSHEAFPADLLLLRsstGRECWVNTKPLDGETDMKLR 78 
                 58999*****************99655588999999999999997654 PP

  == domain 2    score: 17.4 bits;  conditional E-value: 9.3e-07
   TIGR01517 343 kdnnlvRrLaaCetmGsataiCsDktGtLtqnvmsvvkgyig 384
                 ++ + vR++   e +G    i sDktGtLt+n+m   +++ g
  MMETSP1137-20121227|7530_1 284 DEPARVRTMVLLEQLGQVSHIFSDKTGTLTSNRMEFRRAVFG 325
                 56789*****************************98887665 PP

  == domain 3    score: 8.2 bits;  conditional E-value: 0.00057
   TIGR01517 430 lkdvkekrkeekvvkiypfeserkkmsvvvkhsegl..........RlfikGaseivlkkcekkldsngeakeisekkdevedeienlasealRtisla 518
                  ++ + +r+e ++++ ++++s+rk+msvvv+ +  l          R+++kGa  +  +++  +      ak    +++ ++d + + a  alRt++ a
  MMETSP1137-20121227|7530_1 450 HDKARGERHEVQLLEAIAYSSDRKRMSVVVRLPPALvasigggcadRIYCKGADSVLFERLAPV-----AAKGQYGSQEALSDLLGEWAEVALRTLVWA 543
                 4556778899999****************99876651111111122444444444433333322.....233333445566666666666666666555 PP

  == domain 4    score: 31.9 bits;  conditional E-value: 3.7e-11
   TIGR01517 527 dspnkglvliavvGikdPvragvreavkkcqraGitvRmvtGDnlstakaiarecgiltagelal 591
                 ++ ++gl+l+++  i+d ++ gv+e  +  ++aG  + m tGD + tak+ia  c+il+++   l
  MMETSP1137-20121227|7530_1 583 EQLESGLTLQGATAIEDKLQDGVPEILADLREAGTKIWMLTGDKVGTAKNIACACNILPQEADXL 647
                 56679*****************************************************9876555 PP

  == domain 5    score: -0.6 bits;  conditional E-value: 0.26
   TIGR01517 629 vavtGDGtnDaPaLkladvGfa.mgiaGtevakeasDiil 667
                     GDG+nD   +k   +G+  +g  G e a+++sD  +
  MMETSP1137-20121227|7530_1 817 CLAIGDGANDVAMIKAGHIGVGiIGKEGME-AVNNSDFAI 855
                 5567****************8624666665.788888766 PP

>> TIGR01657  P-ATPase-V: P-type ATPase of unknown pump specificity (type V)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0      0.46     1e+02     249     284 ..      35      72 ..      31      74 .. 0.78
   2 !   14.5   0.0   4.5e-06     0.001     444     604 ..     297     518 ..     293     563 .. 0.63
   3 !   37.2   1.3   6.2e-13   1.4e-10     641     832 ..     583     844 ..     578     854 .. 0.80

  Alignments for each domain:
  == domain 1    score: -2.1 bits;  conditional E-value: 0.46
   TIGR01657 249 pgDivlisrleekllpcDavLlegs....civnEsmltGE 284
                  gD+v +    +++ p+D++Ll++s    c vn   l GE
  MMETSP1137-20121227|7530_1  35 EGDVVRVD--SHEAFPADLLLLRSStgreCWVNTKPLDGE 72 
                 59999999..88899******9985444478887777777 PP

  == domain 2    score: 14.5 bits;  conditional E-value: 4.5e-06
   TIGR01657 444 iaGkidvvcFDKTGTLTedgldllgvqglsnaee..................................................flkevtedssekksetlkalatchslt..kled.kl....vGDpld.lkmleavgwtleeedesaleesilavvr..tedktkelsiirrfeFssalkrmsvivkteeerkke......llafvKGaPEtiaellsketvpsd 604
                 + G+++ +  DKTGTLT++ ++++       a                                                     l++ ++d   + +e l ala  hs++  ++ d ++    + D l  ++++e +g+ +e+ ++  + +  + v +     + +e++ + +  +ss  krmsv+v+ + +            ++ KGa  ++ e+l +     +
  MMETSP1137-20121227|7530_1 297 QLGQVSHIFSDKTGTLTSNRMEFRRAVFGGVAYGcgdtaisrslgkandaprraaplppyagttaatrafvsfeeaesdasiwdVLSADDADG-AALRECLVALAVNHSVMleQVGDaQIpsasSPDELAfVAAAEHFGLHFEA-RQ--TARG-VVVLHdkARGERHEVQLLEAIAYSSDRKRMSVVVRLPPALVASigggcaDRIYCKGADSVLFERLAPVAAKGQ 518
                 6699999999************98544443333345677999999999999998888888888888888777655555555544333333333.77777788888888765334555333221144555523455667777777.22..2222.32444323344499********************998876655445444457888887777777765554444 PP

  == domain 3    score: 37.2 bits;  conditional E-value: 6.2e-13
   TIGR01657 641 davEsnleflGllvlenklkpdtkevikeLkeasirvvmitGDnllTavsVarevgivekk.ktlilaeaeepekgksaqikfeskde..........kiastkveqpvkekkdslesllasryslalsGkalavlleksk.......................................................ellkklllkvk..VfARvaPeqKeelvetlk..kldytvlmcGDGaNDcgALkqAdvGisLseaeA 832
                 +++Es l+++G   +e kl++   e++ +L+ea  ++ m tGD++ Ta ++a  ++i+ ++ + l +   + p   +++ +k  ++++            a       v+ k   l +   ++++ al+G+   +l+ +                                                         e l  +   ++  V  R   +qK+++++ +k    + + l +GDGaND++ +k+ ++G+ +  +e+
  MMETSP1137-20121227|7530_1 583 EQLESGLTLQGATAIEDKLQDGVPEILADLREAGTKIWMLTGDKVGTAKNIACACNILPQEaDXLEITTETFPVLADVKTTKLLEVQQtleasrpmptRLARLGARLGVRSKLPRLPHEELHKQTAALDGEFPGLLEVRHAliafqkklsdqmksevsrlxxxxxxxxxqxapdgxxxxxxxxxxxxixxxaxxxgEVLTAVSNSCRavVACRARKDQKAQMLNMIKfgVPGSCCLAIGDGANDVAMIKAGHIGVGIIGKEG 844
                 89********************************************************76614555666667888888888888887778899988774444444555555544456666666677777777777766666677777777888888888999999999999999999999999999*********97777777666443677999********99983346999999******************9877765 PP

>> TIGR01116  ATPase-IIA1_Ca: calcium-translocating P-type ATPase, SERCA-type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0      0.87     2e+02      76     105 ..      31      60 ..      26      79 .. 0.75
   2 !   18.1   0.0   5.4e-07   0.00012     251     298 ..     287     334 ..     282     350 .. 0.84
   3 !    5.6   0.0    0.0033      0.75     329     451 ..     412     546 ..     382     551 .. 0.67
   4 !   19.0   0.0   2.8e-07   6.4e-05     448     506 ..     582     640 ..     569     665 .. 0.90
   5 !    8.0   0.0   0.00059      0.13     520     629 ..     788     900 ..     771     936 .. 0.83

  Alignments for each domain:
  == domain 1    score: -2.4 bits;  conditional E-value: 0.87
   TIGR01116  76 kdlvpGdivelavGdkvpadvrllelkslk 105
                 +d+  Gd+v +   +  pad+ ll++ + +
  MMETSP1137-20121227|7530_1  31 ADVREGDVVRVDSHEAFPADLLLLRSSTGR 60 
                 58889***************9888776654 PP

  == domain 2    score: 18.1 bits;  conditional E-value: 5.4e-07
   TIGR01116 251 alvrklPsvetlGcttvicsdktGtlttnkmsvaklvalekefkvegt 298
                 a vr++  +e lG ++ i sdktGtlt+n+m   + v     +   +t
  MMETSP1137-20121227|7530_1 287 ARVRTMVLLEQLGQVSHIFSDKTGTLTSNRMEFRRAVFGGVAYGCGDT 334
                 779****************************99988876666666655 PP

  == domain 3    score: 5.6 bits;  conditional E-value: 0.0033
   TIGR01116 329 kkkvekvGeateaalkvlveklgls....aaknkkslksrealacnslikkkatlefsrdrksmsvlvksnklfvk....GapeellersthillkgsavPltek....akqkilaslkelssealrclalavke 451
                 ++++    ++ e a+   +e +gl     ++ +++ + + +a + ++ ++    + +s drk msv+v+    +v     G ++ +  + +   l ++ +P+ +k     ++++   l e+++ alr+l  a +e
  MMETSP1137-20121227|7530_1 412 DAQIPSASSPDELAFVAAAEHFGLHfearQTARGVVVLHDKARGERHEVQLLEAIAYSSDRKRMSVVVRLPPALVAsiggGCADRIYCKGADSVLFERLAPVAAKgqygSQEALSDLLGEWAEVALRTLVWAKRE 546
                 45566666777778777788776531111333444455556666667777777889************9765554323336778888888777777788888776222134455556789********9998775 PP

  == domain 4    score: 19.0 bits;  conditional E-value: 2.8e-07
   TIGR01116 448 avkeesklifiGvvglkdPPreevadaiekcreaGirvivitGdnketaeaiarriGil 506
                   + es l++ G  +++d  +  v + +++ reaG ++ ++tGd+ +ta+ ia    il
  MMETSP1137-20121227|7530_1 582 QEQLESGLTLQGATAIEDKLQDGVPEILADLREAGTKIWMLTGDKVGTAKNIACACNIL 640
                 45679***********************************************9877766 PP

  == domain 5    score: 8.0 bits;  conditional E-value: 0.00059
   TIGR01116 520 kkalvfsrvePshklklvelkel...dqivamtGdGvndaPalkkadiGia.mGsGtevakeasdlvladdnfativkaveeGraiynnmkqfirylissniGevvsifltaal 629
                  +a+v +r+   +k +++++ ++   +  +   GdG nd   +k  +iG+  +G     a + sd+ ++   f   +  v+ Gr  y+   +f  ++       v s+fl ++l
  MMETSP1137-20121227|7530_1 788 CRAVVACRARKDQKAQMLNMIKFgvpGSCCLAIGDGANDVAMIKAGHIGVGiIGKEGMEAVNNSDFAIGQFRFLRGLLLVH-GRQNYRRYATFCYFMFYQSSTMVFSLFLYSLL 900
                 467777888887777766655541117899999****************97358877889999******999998888775.9999***9999999999888999999998877 PP

>> TIGR01525  ATPase-IB_hvy: heavy metal translocating P-type ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.0     0.095        22      72      97 ..      31      56 ..      27      76 .. 0.74
   2 !   15.8   0.0   4.7e-06    0.0011     239     268 ..     292     321 ..     289     334 .. 0.87
   3 !   25.0   0.0   7.7e-09   1.7e-06     377     426 ..     590     639 ..     544     646 .. 0.82
   4 !    5.6   0.1    0.0058       1.3     453     490 ..     816     854 ..     787     865 .. 0.74

  Alignments for each domain:
  == domain 1    score: 1.6 bits;  conditional E-value: 0.095
   TIGR01525 72 eelqvgDivkVkpGekipvDGevieg 97
                ++++ gD+v+V  +e +p+D  +++ 
  MMETSP1137-20121227|7530_1 31 ADVREGDVVRVDSHEAFPADLLLLRS 56
                6899****************877664 PP

  == domain 2    score: 15.8 bits;  conditional E-value: 4.7e-06
   TIGR01525 239 gealEklakvktvvfDKTGTLTkGkltvkd 268
                    lE+l +v+++  DKTGTLT  +++  +
  MMETSP1137-20121227|7530_1 292 MVLLEQLGQVSHIFSDKTGTLTSNRMEFRR 321
                 568********************9998765 PP

  == domain 3    score: 25.0 bits;  conditional E-value: 7.7e-09
   TIGR01525 377 ellglialeDelrpeakeaiaeLkkkgievvlltGDnrsaaeavAkelgi 426
                 +l+g+ a+eD+l++ + e++a+L+++g ++++ltGD+  +a+++A +  i
  MMETSP1137-20121227|7530_1 590 TLQGATAIEDKLQDGVPEILADLREAGTKIWMLTGDKVGTAKNIACACNI 639
                 7899*****************************************87765 PP

  == domain 4    score: 5.6 bits;  conditional E-value: 0.0058
   TIGR01525 453 kvamvGDGiNDApALaaAdvGiamg.sgsdvaieaADvv 490
                   + +GDG ND + ++a ++G+ +  +    a++ +D+ 
  MMETSP1137-20121227|7530_1 816 CCLAIGDGANDVAMIKAGHIGVGIIgKEGMEAVNNSDFA 854
                 5678******************98655555577777765 PP

>> TIGR01512  ATPase-IB2_Cd: cadmium-translocating P-type ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.0     0.072        16      67     104 ..      31      72 ..      29      80 .. 0.77
   2 !   15.9   0.0   3.9e-06   0.00089     223     254 ..     290     321 ..     288     329 .. 0.86
   3 !   18.5   0.0   6.4e-07   0.00015     315     360 ..     590     634 ..     570     639 .. 0.92
   4 !    6.6   0.2    0.0025      0.57     388     420 ..     819     851 ..     805     862 .. 0.83

  Alignments for each domain:
  == domain 1    score: 1.8 bits;  conditional E-value: 0.072
   TIGR01512  67 eelkvgdvvvVkkGervPvDGevls....gessldesalTGE 104
                 ++++ gdvv V ++e+ P+D  +l     +e+ ++++ l GE
  MMETSP1137-20121227|7530_1  31 ADVREGDVVRVDSHEAFPADLLLLRsstgRECWVNTKPLDGE 72 
                 57999***************9877522223567778877777 PP

  == domain 2    score: 15.9 bits;  conditional E-value: 3.9e-06
   TIGR01512 223 kggavlealakvktvalDKTGTLTkGklkvsd 254
                 +   +le+l++v+ +  DKTGTLT ++++  +
  MMETSP1137-20121227|7530_1 290 RTMVLLEQLGQVSHIFSDKTGTLTSNRMEFRR 321
                 56678********************9998765 PP

  == domain 3    score: 18.5 bits;  conditional E-value: 6.4e-07
   TIGR01512 315 kllglialsDevredaaeaiaeLkklgvkklvlltGDreaaaekva 360
                 +l g+ a++D++++ + e++a+L+++g +k+ +ltGD+  +a+++a
  MMETSP1137-20121227|7530_1 590 TLQGATAIEDKLQDGVPEILADLREAG-TKIWMLTGDKVGTAKNIA 634
                 5679999********************.799*************99 PP

  == domain 4    score: 6.6 bits;  conditional E-value: 0.0025
   TIGR01512 388 mvGDGiNDapaLaaAdvgiam.GasgsdvaletA 420
                  +GDG ND   ++a+++g+ + G++g +++   +
  MMETSP1137-20121227|7530_1 819 AIGDGANDVAMIKAGHIGVGIiGKEGMEAVN-NS 851
                 69*****************953777776554.44 PP

>> TIGR01522  ATPase-IIA2_Ca: calcium-transporting P-type ATPase, PMR1-type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0     4e-06    0.0009     305     337 ..     287     319 ..     282     336 .. 0.89
   2 !   14.8   0.0   4.4e-06     0.001     476     538 ..     576     638 ..     551     655 .. 0.86
   3 !    7.4   0.0   0.00073      0.17     565     630 ..     790     857 ..     777     901 .. 0.68

  Alignments for each domain:
  == domain 1    score: 14.9 bits;  conditional E-value: 4e-06
   TIGR01522 305 aivrklpsvetlGsvnvicsdktGtltknhmtv 337
                 a vr +  +e lG v  i sdktGtlt+n+m  
  MMETSP1137-20121227|7530_1 287 ARVRTMVLLEQLGQVSHIFSDKTGTLTSNRMEF 319
                 67999999***********************76 PP

  == domain 2    score: 14.8 bits;  conditional E-value: 4.4e-06
   TIGR01522 476 lrvlalasktekdlvfaGllGlndpprpdvkeaveklltgGvrvimitGdseetavsiarrlG 538
                   +  l ++ e+ l+++G   + d  + +v+e +  l ++G ++ m+tGd + ta +ia    
  MMETSP1137-20121227|7530_1 576 CLITQLQEQLESGLTLQGATAIEDKLQDGVPEILADLREAGTKIWMLTGDKVGTAKNIACACN 638
                 45677888999***********************************************97655 PP

  == domain 3    score: 7.4 bits;  conditional E-value: 0.00073
   TIGR01522 565 vavfaraspehklkivkalq..krGdvvamtGdGvndapalkladiGva.mGrtGtdvakeaadmiltd 630
                 ++v  ra  ++k ++++ ++    G+     GdG nd + +k+  iGv  +G++G + +   +d  + +
  MMETSP1137-20121227|7530_1 790 AVVACRARKDQKAQMLNMIKfgVPGSCCLAIGDGANDVAMIKAGHIGVGiIGKEGMEAVN-NSDFAIGQ 857
                 556667777777666665442268999999******************736999988554.45655555 PP

>> TIGR01523  ATPase-IID_K-Na: potassium/sodium efflux P-type ATPase, fungal-type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0   1.4e-06   0.00033     310     374 ..     248     322 ..     241     345 .. 0.76
   2 !   15.3   0.0   2.6e-06    0.0006     571     634 ..     579     642 ..     571     659 .. 0.86
   3 ?   -0.7   0.1      0.18        41     671     728 ..     792     851 ..     784     866 .. 0.71

  Alignments for each domain:
  == domain 1    score: 16.2 bits;  conditional E-value: 1.4e-06
   TIGR01523 310 lalsiipeslvvvlsitmavgakvmvkrrvi..........vrklealealgavtdicsdktgtltqgkmlarrv 374
                 l+ s+ip s+ v   i ++ g+  m++   +          vr +  le lg v+ i sdktgtlt  +m  rr 
  MMETSP1137-20121227|7530_1 248 LCYSLIPISFYVTRNIIFSFGRYFMSHDLTMydeeqdeparVRTMVLLEQLGQVSHIFSDKTGTLTSNRMEFRRA 322
                 56789999999999999999998888643322222223333999**************************88875 PP

  == domain 2    score: 15.3 bits;  conditional E-value: 2.6e-06
   TIGR01523 571 tlnrdvaesdlvflslvgiydpprteskgavkkfhragirvhmltgdfvetakaiarevgilpt 634
                 t  ++  es l + +   i d  ++     +  + +ag ++ mltgd v+tak ia    ilp 
  MMETSP1137-20121227|7530_1 579 TQLQEQLESGLTLQGATAIEDKLQDGVPEILADLREAGTKIWMLTGDKVGTAKNIACACNILPQ 642
                 56666778888888888888888888888899999****************************8 PP

  == domain 3    score: -0.7 bits;  conditional E-value: 0.18
   TIGR01523 671 viarcapqtkvkmiealhrr..kkfvamtgdgvndspslkqanvgia.mgingsdvakeas 728
                 v  r   + k +m++ ++       +   gdg nd   +k   +g+  +g++g +   + s
  MMETSP1137-20121227|7530_1 792 VACRARKDQKAQMLNMIKFGvpGSCCLAIGDGANDVAMIKAGHIGVGiIGKEGMEAV-NNS 851
                 55566666777777766543114677889**************99962578777643.344 PP

>> TIGR01106  ATPase-IIC_X-K: Na,H/K antiporter P-type ATPase, alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0       0.5   1.1e+02     159     201 ..      33      78 ..      30      88 .. 0.81
   2 !   13.7   0.0   9.5e-06    0.0022     332     369 ..     289     326 ..     284     409 .. 0.74
   3 !   14.6   0.0     5e-06    0.0011     556     616 ..     588     648 ..     579     662 .. 0.88
   4 ?   -1.6   0.2      0.41        94     683     712 ..     814     844 ..     779     854 .. 0.67

  Alignments for each domain:
  == domain 1    score: -1.9 bits;  conditional E-value: 0.5
   TIGR01106 159 vvvgdlvevkggdripadlriisa...kglkvdnssltgesepqtr 201
                 v  gd+v v+  +  padl ++ +   +++ v+   l ge++ + r
  MMETSP1137-20121227|7530_1  33 VREGDVVRVDSHEAFPADLLLLRSstgRECWVNTKPLDGETDMKLR 78 
                 5569**************9888652236799********9988776 PP

  == domain 2    score: 13.7 bits;  conditional E-value: 9.5e-06
   TIGR01106 332 vknleavetlgstsvicsdktgtltqnrmtvahlwfdn 369
                 v+ +  +e lg  s i sdktgtlt nrm   +  f  
  MMETSP1137-20121227|7530_1 289 VRTMVLLEQLGQVSHIFSDKTGTLTSNRMEFRRAVFGG 326
                 56666789*********************987766654 PP

  == domain 3    score: 14.6 bits;  conditional E-value: 5e-06
   TIGR01106 556 nlcfvgllsmidppraavpdavgkcrsagikvimvtgdhpitakaiaksvgiisegnetve 616
                 +l++ g  ++ d  +  vp+ ++  r ag k+ m+tgd+  tak ia +  i+ ++++  e
  MMETSP1137-20121227|7530_1 588 GLTLQGATAIEDKLQDGVPEILADLREAGTKIWMLTGDKVGTAKNIACACNILPQEADXLE 648
                 67778888888999999**********************************9988877665 PP

  == domain 4    score: -1.6 bits;  conditional E-value: 0.41
   TIGR01106 683 gaivavtgdgvndspalkkadigvam.giag 712
                 g+     gdg nd   +k   igv + g  g
  MMETSP1137-20121227|7530_1 814 GSCCLAIGDGANDVAMIKAGHIGVGIiGKEG 844
                 5666678****************95314444 PP

>> TIGR01511  ATPase-IB1_Cu: copper-translocating P-type ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0      0.86     2e+02      92     117 ..      31      56 ..      26      75 .. 0.77
   2 !    8.8   0.0   0.00062      0.14     253     279 ..     293     319 ..     288     325 .. 0.85
   3 !   16.4   0.0   3.1e-06    0.0007     359     407 ..     590     638 ..     578     644 .. 0.90
   4 ?    1.4   0.2       0.1        24     431     454 ..     817     840 ..     784     856 .. 0.81

  Alignments for each domain:
  == domain 1    score: -1.6 bits;  conditional E-value: 0.86
   TIGR01511  92 eelqvgdilkvkpgekipvDGvvveG 117
                 +++++gd+++v + e +p+D  +++ 
  MMETSP1137-20121227|7530_1  31 ADVREGDVVRVDSHEAFPADLLLLRS 56 
                 5799****************888764 PP

  == domain 2    score: 8.8 bits;  conditional E-value: 0.00062
   TIGR01511 253 ealekaaevdtvvfDKTGTLTeGklev 279
                   le++ +v+++  DKTGTLT+ ++e 
  MMETSP1137-20121227|7530_1 293 VLLEQLGQVSHIFSDKTGTLTSNRMEF 319
                 569******************998875 PP

  == domain 3    score: 16.4 bits;  conditional E-value: 3.1e-06
   TIGR01511 359 elaavlaledelkpeakevieaLkkrgievvlltGDnekaakavAkelg 407
                 +l++++a+ed+l+  + e+++ L+++g ++++ltGD+  +ak++A +  
  MMETSP1137-20121227|7530_1 590 TLQGATAIEDKLQDGVPEILADLREAGTKIWMLTGDKVGTAKNIACACN 638
                 578899**************************************97655 PP

  == domain 4    score: 1.4 bits;  conditional E-value: 0.1
   TIGR01511 431 vamvGDGiNDapaLaaadvgiaig 454
                  + +GDG ND   + a ++g+ i 
  MMETSP1137-20121227|7530_1 817 CLAIGDGANDVAMIKAGHIGVGII 840
                 5789****************9874 PP

>> TIGR00338  serB: phosphoserine phosphatase SerB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.0      0.12        28      85     130 ..     600     638 ..     580     675 .. 0.68
   2 !   21.6   0.2   1.3e-07     3e-05     153     201 ..     801     847 ..     788     859 .. 0.79

  Alignments for each domain:
  == domain 1    score: 2.0 bits;  conditional E-value: 0.12
   TIGR00338  85 elteGveelvkkLkekgykvaviSGgFdlvaeklkekLgldavfaN 130
                 +l +Gv e+   L+e+g k+ ++ G     a++++         +N
  MMETSP1137-20121227|7530_1 600 KLQDGVPEILADLREAGTKIWMLTGDKVGTAKNIACA-------CN 638
                 5789******************999766666555433.......33 PP

  == domain 2    score: 21.6 bits;  conditional E-value: 1.3e-07
   TIGR00338 153 kaktllkllekegislektvavGDGanDlsmikaAglgiafnakpvlke 201
                 ka++l  +  k g++   ++a+GDGanD++mika ++g++  +k+ ++ 
  MMETSP1137-20121227|7530_1 801 KAQMLNMI--KFGVPGSCCLAIGDGANDVAMIKAGHIGVGIIGKEGMEA 847
                 44444433..68899999**********************999987765 PP

>> TIGR01647  ATPase-IIIA_H: plasma-membrane proton-efflux P-type ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0      0.51   1.2e+02     105     133 ..      28      56 ..      22      73 .. 0.74
   2 !   12.9   0.0   2.1e-05    0.0049     272     308 ..     287     323 ..     280     342 .. 0.88
   3 !    6.4   0.0     0.002      0.45     434     481 ..     592     639 ..     573     663 .. 0.84
   4 ?   -1.8   0.3      0.61   1.4e+02     540     560 ..     820     840 ..     814     855 .. 0.86

  Alignments for each domain:
  == domain 1    score: -1.6 bits;  conditional E-value: 0.51
   TIGR01647 105 leakelvpGDvvalklGdivpaDvklveg 133
                    +++  GDvv++ + ++ paD+ l+  
  MMETSP1137-20121227|7530_1  28 GTWADVREGDVVRVDSHEAFPADLLLLRS 56 
                 455667789**************988764 PP

  == domain 2    score: 12.9 bits;  conditional E-value: 2.1e-05
   TIGR01647 272 aivkklsaiEelagvdiLCsDktGtltlnklsideel 308
                 a v+ ++ +E+l  v  + sDktGtlt n+++  + +
  MMETSP1137-20121227|7530_1 287 ARVRTMVLLEQLGQVSHIFSDKTGTLTSNRMEFRRAV 323
                 66889999***********************987765 PP

  == domain 3    score: 6.4 bits;  conditional E-value: 0.002
   TIGR01647 434 lgllpllDPPreDtketierakelgvevkmvtGDhlaiaketarrlgl 481
                  g  ++ D  ++   e +   +e g ++ m+tGD++  ak++a   ++
  MMETSP1137-20121227|7530_1 592 QGATAIEDKLQDGVPEILADLREAGTKIWMLTGDKVGTAKNIACACNI 639
                 5556666666777778889999********************977665 PP

  == domain 4    score: -1.8 bits;  conditional E-value: 0.61
   TIGR01647 540 tGDGvnDaPaLkkAdvGiAva 560
                  GDG+nD+  +k   +G+ + 
  MMETSP1137-20121227|7530_1 820 IGDGANDVAMIKAGHIGVGII 840
                 6***************99875 PP

>> TIGR01484  HAD-SF-IIB: HAD hydrolase, family IIB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0       6.4   1.5e+03       1      22 [.     303     324 ..     303     325 .. 0.85
   2 ?    0.5   0.0      0.49   1.1e+02      16      44 ..     600     627 ..     590     640 .. 0.84
   3 !   16.0   0.0   9.1e-06    0.0021     178     220 ..     795     838 ..     778     839 .. 0.74

  Alignments for each domain:
  == domain 1    score: -3.1 bits;  conditional E-value: 6.4
   TIGR01484   1 llffDlDgTLldpklelseeli 22 
                 ++f+D  gTL+++++e  ++++
  MMETSP1137-20121227|7530_1 303 HIFSDKTGTLTSNRMEFRRAVF 324
                 5899999******998877765 PP

  == domain 2    score: 0.5 bits;  conditional E-value: 0.49
   TIGR01484  16 elseelieaLerlrealgvkvvivTGRsl 44 
                 +l++ ++e L+ lrea g k++ +TG  +
  MMETSP1137-20121227|7530_1 600 KLQDGVPEILADLREA-GTKIWMLTGDKV 627
                 588999**********.9*******9665 PP

  == domain 3    score: 16.0 bits;  conditional E-value: 9.1e-06
   TIGR01484 178 gvdKgkalqalleeln.lkkeeilafGDsgNDeemlevaglava 220
                 ++ K + +q+l+   + ++ +++la+GD++ND++m+++++ +v 
  MMETSP1137-20121227|7530_1 795 RARKDQKAQMLNMIKFgVPGSCCLAIGDGANDVAMIKAGHIGVG 838
                 55555556666554455999*******************99875 PP

>> TIGR00099  Cof-subfamily: Cof-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0       1.3     3e+02      16      49 ..     600     633 ..     597     641 .. 0.81
   2 !   14.3   0.1   2.1e-05    0.0048     194     229 ..     803     839 ..     779     850 .. 0.75

  Alignments for each domain:
  == domain 1    score: -1.4 bits;  conditional E-value: 1.3
   TIGR00099  16 eispetkealaklrekGikvvlaTGRsykevkei 49 
                 ++++ + e+la lre G k+  +TG +   +k+i
  MMETSP1137-20121227|7530_1 600 KLQDGVPEILADLREAGTKIWMLTGDKVGTAKNI 633
                 566777799****************887666666 PP

  == domain 2    score: 14.3 bits;  conditional E-value: 2.1e-05
   TIGR00099 194 qslae.klgislenviaiGDseNDieMleaagvgvam 229
                 q l+  k g+  + + aiGD+ ND++M++a  +gv  
  MMETSP1137-20121227|7530_1 803 QMLNMiKFGVPGSCCLAIGDGANDVAMIKAGHIGVGI 839
                 4444446677778899*************99988754 PP

>> TIGR01497  kdpB: K+-transporting ATPase, B subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   0.0       2.3   5.2e+02     294     312 ..     296     314 ..     295     318 .. 0.84
   2 !   10.1   0.0   0.00014     0.032     437     481 ..     591     635 ..     578     645 .. 0.91
   3 ?   -0.6   0.0      0.24        55     608     639 ..     995    1026 ..     952    1038 .. 0.74

  Alignments for each domain:
  == domain 1    score: -3.8 bits;  conditional E-value: 2.3
   TIGR01497 294 eaaGdvdtlvldktGtitl 312
                 e  G+v  +  dktGt+t 
  MMETSP1137-20121227|7530_1 296 EQLGQVSHIFSDKTGTLTS 314
                 67899***********995 PP

  == domain 2    score: 10.1 bits;  conditional E-value: 0.00014
   TIGR01497 437 iyGviylkdivksGikerfeqlrklGiktimltGdnrltaaviak 481
                 + G  ++ d ++ G+ e ++ lr+ G k  mltGd   ta  ia 
  MMETSP1137-20121227|7530_1 591 LQGATAIEDKLQDGVPEILADLREAGTKIWMLTGDKVGTAKNIAC 635
                 5688999*********************************99986 PP

  == domain 3    score: -0.6 bits;  conditional E-value: 0.24
   TIGR01497  608 lsspdsailsalifnaliipaliplalkGvky 639 
                   + p  + ls   +na++i++l  lal   ++
  MMETSP1137-20121227|7530_1  995 HEDPAWSALSFTAYNAMVIVVLSRLALEVHSW 1026
                  455666789999**************987666 PP

>> TIGR01662  HAD-SF-IIIA: HAD hydrolase, family IIIA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   0.0     0.017       3.9      25      57 ..     600     631 ..     590     653 .. 0.84
   2 ?    3.4   0.0     0.073        17      87     129 ..     790     831 ..     777     838 .. 0.78

  Alignments for each domain:
  == domain 1    score: 5.4 bits;  conditional E-value: 0.017
   TIGR01662  25 elypevidalaelkkeGykvvivtNqsgigrgk 57 
                 +l ++v+++la l+++G k+  +t+ + +g+ k
  MMETSP1137-20121227|7530_1 600 KLQDGVPEILADLREAGTKIWMLTGDK-VGTAK 631
                 56799********************99.88876 PP

  == domain 2    score: 3.4 bits;  conditional E-value: 0.073
   TIGR01662  87 s..kceyrKpktgmleealkrlneidakesvvvGDavltDleaak 129
                 +   c +rK +   +++++k    +  + ++ +GD   +D+ ++k
  MMETSP1137-20121227|7530_1 790 AvvACRARKDQKAQMLNMIKFG--VPGSCCLAIGD-GANDVAMIK 831
                 134688****999999999865..99*********.779998886 PP

>> TIGR01524  ATPase-IIIB_Mg: magnesium-translocating P-type ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0      0.39        89     330     355 ..     295     320 ..     289     324 .. 0.80
   2 ?   -3.8   0.0       1.9   4.3e+02     406     426 ..     460     480 ..     449     490 .. 0.82
   3 ?    6.6   0.0    0.0013       0.3     494     549 ..     579     634 ..     566     681 .. 0.81
   4 ?   -4.0   0.1       2.2     5e+02     602     627 ..     814     839 ..     789     842 .. 0.72

  Alignments for each domain:
  == domain 1    score: -1.5 bits;  conditional E-value: 0.39
   TIGR01524 330 iqnfGamdilctdktGtltqdkivle 355
                 ++ +G +  + +dktGtlt +++++ 
  MMETSP1137-20121227|7530_1 295 LEQLGQVSHIFSDKTGTLTSNRMEFR 320
                 567788888999********999875 PP

  == domain 2    score: -3.8 bits;  conditional E-value: 1.9
   TIGR01524 406 fkkvdeipfdferrrlsvvve 426
                  + ++ i +  +r+r+svvv 
  MMETSP1137-20121227|7530_1 460 VQLLEAIAYSSDRKRMSVVVR 480
                 5667889999*********95 PP

  == domain 3    score: 6.6 bits;  conditional E-value: 0.0013
   TIGR01524 494 adlskedeeeliieGflafldppkestkkaiaalkkngiavkvltGdnevvtaric 549
                 ++l+++ e+ l+++G  a  d  ++   + +a l+++g ++ +ltGd+   +++i 
  MMETSP1137-20121227|7530_1 579 TQLQEQLESGLTLQGATAIEDKLQDGVPEILADLREAGTKIWMLTGDKVGTAKNIA 634
                 45888999***************************************987777774 PP

  == domain 4    score: -4.0 bits;  conditional E-value: 2.2
   TIGR01524 602 GhtvGflGdGindapalrkadvGisv 627
                 G     +GdG nd   +++  +G+ +
  MMETSP1137-20121227|7530_1 814 GSCCLAIGDGANDVAMIKAGHIGVGI 839
                 6666679***********99999865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1332 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       164  (0.0399805); expected 82.0 (0.02)
Passed bias filter:                      123  (0.0299854); expected 82.0 (0.02)
Passed Vit filter:                        39  (0.00950756); expected 4.1 (0.001)
Passed Fwd filter:                        18  (0.0043881); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              18  [number of targets reported over threshold]
# CPU time: 1.38u 0.17s 00:00:01.54 Elapsed: 00:00:01.56
# Mc/sec: 1126.98
//
Query:       MMETSP1137-20121227|7531_1  [L=456]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (456 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        94  (0.0229157); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.15s 00:00:00.44 Elapsed: 00:00:00.50
# Mc/sec: 1203.74
//
Query:       MMETSP1137-20121227|7532_1  [L=119]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        3.6    4.0   7.7          4    3.9   5.3    1.0  1  TIGR00860 LIC: cation transporter family protein


Domain annotation for each model (and alignments):
>> TIGR00860  LIC: cation transporter family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   5.3   0.00097         4     337     437 ..       6     107 ..       1     112 [. 0.67

  Alignments for each domain:
  == domain 1    score: 3.9 bits;  conditional E-value: 0.00097
   TIGR00860 337 kkkrklllerlarllkkkeegeekrrpaleake..lsslelrakkggedleskteeeallksvppseasldlakileevr.iakrlrkkdeseevakeklkrak 437
                 ++  +l l+r++++++ +e + ++ + a+e++   l++l  r++  ++d++ ++++e++ +s  p + +++++  +   +  +k+ +++++ e+ ++e+ +++k
  MMETSP1137-20121227|7532_1   6 NRTLALRLNRATKRTRTTEGQRAQAYMAHESTXeaLADLGRRTQ--TRDVNAHETREHNAHSERPPNVQRNRHAPTPPHAhTHKAAQRRASREKRRQEWGRHSK 107
                 44455556666666666666665555555555534555555544..4688888899999999999888887777666666588888888888998888887776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (119 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       107  (0.0260848); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.15u 0.16s 00:00:00.31 Elapsed: 00:00:00.28
# Mc/sec: 560.95
//
Query:       MMETSP1137-20121227|7533_1  [L=267]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (267 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        55  (0.0134081); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.15s 00:00:00.36 Elapsed: 00:00:00.41
# Mc/sec: 859.54
//
Query:       MMETSP1137-20121227|7534_1  [L=668]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (668 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       109  (0.0265724); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.14s 00:00:00.55 Elapsed: 00:00:00.55
# Mc/sec: 1603.07
//
Query:       MMETSP1137-20121227|7535_1  [L=480]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (480 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        83  (0.020234); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.13s 00:00:00.46 Elapsed: 00:00:00.46
# Mc/sec: 1377.28
//
Query:       MMETSP1137-20121227|7537_1  [L=775]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (775 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       102  (0.0248659); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.48u 0.15s 00:00:00.63 Elapsed: 00:00:00.68
# Mc/sec: 1504.29
//
Query:       MMETSP1137-20121227|7538_1  [L=164]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (164 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        43  (0.0104827); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.14s 00:00:00.29 Elapsed: 00:00:00.30
# Mc/sec: 721.54
//
Query:       MMETSP1137-20121227|7539_1  [L=552]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.5e-15   51.5   0.0    1.3e-14   50.9   0.0    1.2  1  TIGR03903 TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
    3.6e-05   21.2   0.0    6.4e-05   20.3   0.0    1.3  1  TIGR03724 arch_bud32: Kae1-associated kinase Bud32
    0.00067   16.1   0.0     0.0011   15.4   0.0    1.3  1  TIGR01982 UbiB: 2-polyprenylphenol 6-hydroxylase
  ------ inclusion threshold ------
       0.02   12.1   0.0      0.048   10.8   0.0    1.6  1  TIGR00938 thrB_alt: homoserine kinase


Domain annotation for each model (and alignments):
>> TIGR03903  TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.9   0.0   1.3e-17   1.3e-14      83     186 ..     247     340 ..     236     373 .. 0.86

  Alignments for each domain:
  == domain 1    score: 50.9 bits;  conditional E-value: 1.3e-17
   TIGR03903  83 rLmlqvLDalaaahdaGvvhRDLkPqnimvsaadveshakvLDFGigaLlpgvedadeatltrttevlGsPaYaaPeqLRgepvtaksDlYaWGLivleCLtGk 186
                  ++ q+  +l + h++ ++hRDLkP n+++   +v     v DFGi+  l    +     l  t+ ++G+ aY aPe LRg    a +D++a G++ +eC  G 
  MMETSP1137-20121227|7539_1 247 SIVFQIACGLDHLHSERLIHRDLKPANVLLDSDGVV---AVADFGISKQLEPKTE-----L--TSTFVGTVAYLAPERLRGAEYAAPADVWALGIVAVECALGS 340
                 567899999*********************888775...577****987765555.....4..5569*********************************8886 PP

>> TIGR03724  arch_bud32: Kae1-associated kinase Bud32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   0.0   6.3e-08   6.4e-05      94     138 ..     247     292 ..     232     303 .. 0.79

  Alignments for each domain:
  == domain 1    score: 20.3 bits;  conditional E-value: 6.3e-08
   TIGR03724  94 ellkevGelvgklHkagivhgDlttsNiivkddk.lyliDfGLgkk 138
                 +++ +++  + +lH+++++h Dl ++N+++++d  + + DfG++k+
  MMETSP1137-20121227|7539_1 247 SIVFQIACGLDHLHSERLIHRDLKPANVLLDSDGvVAVADFGISKQ 292
                 567778888899******************766515678****997 PP

>> TIGR01982  UbiB: 2-polyprenylphenol 6-hydroxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   1.1e-06    0.0011     253     311 ..     238     298 ..     232     309 .. 0.79

  Alignments for each domain:
  == domain 1    score: 15.4 bits;  conditional E-value: 1.1e-06
   TIGR01982 253 aGldlkalaenlvesf..lkqvlrdgfFHaDlHpGNilvakdgkiialDfGivgrlseeer 311
                 +Gl    la+ + ++   l +   + + H Dl p N+l+++dg +++ DfGi  +l++++ 
  MMETSP1137-20121227|7539_1 238 NGLSEDVLASIVFQIAcgLDHLHSERLIHRDLKPANVLLDSDGVVAVADFGISKQLEPKTE 298
                 666666777766665522567888999****************************998875 PP

>> TIGR00938  thrB_alt: homoserine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   4.7e-05     0.048     188     212 ..     263     287 ..     237     292 .. 0.88

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 4.7e-05
   TIGR00938 188 gvihadlfkdnvlldgdklkgvidf 212
                  +ih dl + nvlld+d++ +v df
  MMETSP1137-20121227|7539_1 263 RLIHRDLKPANVLLDSDGVVAVADF 287
                 57**********************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (552 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       384  (0.0936129); expected 82.0 (0.02)
Passed bias filter:                      174  (0.0424183); expected 82.0 (0.02)
Passed Vit filter:                        26  (0.00633837); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.54u 0.18s 00:00:00.72 Elapsed: 00:00:00.65
# Mc/sec: 1120.89
//
Query:       MMETSP1137-20121227|7540_1  [L=301]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.5e-71  239.4   1.2    2.6e-71  238.7   0.8    1.2  1  TIGR01241 FtsH_fam: ATP-dependent metallopeptidase HflB
      1e-32  111.5   0.1    1.5e-32  111.0   0.1    1.2  1  TIGR01242 26Sp45: 26S proteasome subunit P45 family
    2.7e-30  103.2   0.1    3.4e-30  102.8   0.1    1.1  1  TIGR01243 CDC48: AAA family ATPase, CDC48 subfamily
    1.3e-15   54.9   0.0    2.3e-15   54.1   0.0    1.3  1  TIGR03689 pup_AAA: proteasome ATPase
    1.9e-06   24.9   0.5    4.6e-05   20.3   0.0    2.1  2  TIGR00390 hslU: ATP-dependent protease HslVU, ATPase subunit
      2e-05   21.6   0.0    3.3e-05   20.9   0.0    1.2  1  TIGR00382 clpX: ATP-dependent Clp protease, ATP-binding subunit ClpX
    0.00035   17.1   0.0    0.00055   16.4   0.0    1.2  1  TIGR03922 T7SS_EccA: type VII secretion AAA-ATPase EccA
    0.00036   17.5   0.0    0.00061   16.7   0.0    1.3  1  TIGR00635 ruvB: Holliday junction DNA helicase RuvB
    0.00047   16.3   0.1      0.043    9.8   0.0    2.1  2  TIGR02639 ClpA: ATP-dependent Clp protease ATP-binding subunit ClpA
    0.00091   15.6   0.3     0.0018   14.6   0.2    1.4  1  TIGR00763 lon: ATP-dependent protease La
     0.0012   15.7   0.0     0.0021   15.0   0.0    1.4  1  TIGR02881 spore_V_K: stage V sporulation protein K
     0.0064   14.4   0.1      0.011   13.5   0.0    1.3  1  TIGR02173 cyt_kin_arch: putative cytidylate kinase
     0.0091   13.3   0.0      0.014   12.7   0.0    1.2  1  TIGR02640 gas_vesic_GvpN: gas vesicle protein GvpN
  ------ inclusion threshold ------
       0.05   10.0   0.0      0.075    9.4   0.0    1.3  1  TIGR00368 TIGR00368: Mg chelatase-like protein


Domain annotation for each model (and alignments):
>> TIGR01241  FtsH_fam: ATP-dependent metallopeptidase HflB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  238.7   0.8   8.8e-74   2.6e-71       5     165 ..     134     297 ..     131     300 .. 0.93

  Alignments for each domain:
  == domain 1    score: 238.7 bits;  conditional E-value: 8.8e-74
   TIGR01241   5 vllsllplilllvglfllflrqakgaggsrif....slgkskaklleeekvkvtfkdvaGideakeelveivdfLknpkkftklGakiPkGvllvGpPGtGktLlakavaGeagvpffsisGsdfvemfvGvGasrvrDlfeqakknaPciifiDeiDavGrkrg 165
                 vll+l+p ++l +gl +l +r + g+gg   +    ++gksk+++++e ++ vtf+dvaG+d ak el+eiv+fL np kft+lGakiP+G+++ GpPGtGktLla+avaGeagvpf+s sGs+fvemfvGvGasrvrDlf qakknaPci+fiDeiDa+G +r+
  MMETSP1137-20121227|7540_1 134 VLLNLFP-LFLXIGLSFLSSRGQGGGGGMGPMggpgAIGKSKSQIQMEPSTGVTFDDVAGCDGAKLELTEIVEFLXNPAKFTALGAKIPRGAIMEGPPGTGKTLLARAVAGEAGVPFVSASGSEFVEMFVGVGASRVRDLFSQAKKNAPCIVFIDEIDAIGGQRA 297
                 6788899.889999999999999999888655222269****************************************************************************************************************************996 PP

>> TIGR01242  26Sp45: 26S proteasome subunit P45 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  111.0   0.1     5e-35   1.5e-32     113     233 ..     179     298 ..     169     301 .] 0.94

  Alignments for each domain:
  == domain 1    score: 111.0 bits;  conditional E-value: 5e-35
   TIGR01242 113 veerpevsyediGGlekqlreireavelplkkpelfeevGieppkGvllyGppGtGktllakavaeetnatfirvvgselvkkyiGeGarlvrevfklakekapsiifideidaiaakrld 233
                 +e    v+++d+ G +    e+ e+ve+ l +p  f  +G + p+G ++ GppGtGktlla+ava e+   f+   gse+v+ ++G Ga+ vr++f  ak+ ap+i+fideidai+ +r  
  MMETSP1137-20121227|7540_1 179 MEPSTGVTFDDVAGCDGAKLELTEIVEF-LXNPAKFTALGAKIPRGAIMEGPPGTGKTLLARAVAGEAGVPFVSASGSEFVEMFVGVGASRVRDLFSQAKKNAPCIVFIDEIDAIGGQRAG 298
                 4556679*******************97.99*************************************************************************************99975 PP

>> TIGR01243  CDC48: AAA family ATPase, CDC48 subfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.8   0.1   1.2e-32   3.4e-30     449     563 ..     184     297 ..     174     301 .] 0.91

  Alignments for each domain:
  == domain 1    score: 102.8 bits;  conditional E-value: 1.2e-32
   TIGR01243 449 nvkwediggleevkqelreavewplkakevfeklgirppkgvllfgppgtgktllakavatesganfiavrgpeilskwvgesekaireifrkarqaapaiifldeidaiaparg 563
                  v ++d+ g + +k el e ve+ l ++  f  lg + p+g ++ gppgtgktlla+ava e+g  f++  g e +  +vg    ++r++f +a++ ap+i+f+deidai  +r 
  MMETSP1137-20121227|7540_1 184 GVTFDDVAGCDGAKLELTEIVEF-LXNPAKFTALGAKIPRGAIMEGPPGTGKTLLARAVAGEAGVPFVSASGSEFVEMFVGVGASRVRDLFSQAKKNAPCIVFIDEIDAIGGQRA 297
                 588999**************998.788999999************************************************9999************************998875 PP

>> TIGR03689  pup_AAA: proteasome ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.1   0.0     8e-18   2.3e-15     169     302 ..     175     293 ..     169     300 .. 0.89

  Alignments for each domain:
  == domain 1    score: 54.1 bits;  conditional E-value: 8e-18
   TIGR03689 169 eelvleevPdvtyadiGGldsqieqirdavelPflhkelyreydlkpPkGvllyGPPGcGktliakavanslaekvaedgeaksyflnikGPellnkyvGeterqirliferarekaaegrPvvvffdemdslf 302
                 +++ +e    vt++d+ G d    ++ + ve+ + +++ +++ + k P+G ++ GPPG+Gktl+a+ava            a   f++  G e+++ +vG    ++r +f++a+++a    P +vf+de+d++ 
  MMETSP1137-20121227|7540_1 175 SQIQMEPSTGVTFDDVAGCDGAKLELTEIVEF-LXNPAKFTALGAKIPRGAIMEGPPGTGKTLLARAVAGE----------AGVPFVSASGSEFVEMFVGVGASRVRDLFSQAKKNA----PCIVFIDEIDAIG 293
                 6677888889*********9999999999997.578999*****************************964..........3457***************************99876....**********995 PP

>> TIGR00390  hslU: ATP-dependent protease HslVU, ATPase subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   0.0   1.6e-07   4.6e-05      46     104 ..     220     276 ..     217     280 .. 0.92
   2 ?    3.4   0.1     0.022       6.3     248     263 ..     281     296 ..     274     301 .] 0.74

  Alignments for each domain:
  == domain 1    score: 20.3 bits;  conditional E-value: 1.6e-07
   TIGR00390  46 vPknilmiGstGvGkteiarrlaklaeaPfikveatkftevGyvGrdveslvrdlvdaa 104
                 +P+  +m G+ G Gkt +ar +a  a++Pf+    + f e+ +vG    s vrdl ++a
  MMETSP1137-20121227|7540_1 220 IPRGAIMEGPPGTGKTLLARAVAGEAGVPFVSASGSEFVEM-FVGVG-ASRVRDLFSQA 276
                 69999***********************************7.99976.5899***9887 PP

  == domain 2    score: 3.4 bits;  conditional E-value: 0.022
   TIGR00390 248 sGiifideidkiakkg 263
                   i+fideid i  + 
  MMETSP1137-20121227|7540_1 281 PCIVFIDEIDAIGGQR 296
                 579********97655 PP

>> TIGR00382  clpX: ATP-dependent Clp protease, ATP-binding subunit ClpX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   0.0   1.1e-07   3.3e-05     122     197 ..     226     295 ..     219     300 .. 0.83

  Alignments for each domain:
  == domain 1    score: 20.9 bits;  conditional E-value: 1.1e-07
   TIGR00382 122 liGptGsGktllaqtlakeldvpfaiadattlteaGyvGedvenillkllqaadydvekaekGiiyideidkiark 197
                 + Gp G+Gktlla+++a e  vpf  a  + + e  +vG     +   l+ +a    +k    i++ideid i  +
  MMETSP1137-20121227|7540_1 226 MEGPPGTGKTLLARAVAGEAGVPFVSASGSEFVEM-FVGVGASRV-RDLFSQA----KKNAPCIVFIDEIDAIGGQ 295
                 569************************99999996.899887765.5566655....566789********99755 PP

>> TIGR03922  T7SS_EccA: type VII secretion AAA-ATPase EccA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0   1.9e-06   0.00055     315     389 ..     224     294 ..     216     300 .. 0.73

  Alignments for each domain:
  == domain 1    score: 16.4 bits;  conditional E-value: 1.9e-06
   TIGR03922 315 lllaGPPGtGkttiArvvakiyaGlgvlrkpevrEvsRadligeyigeseaktnelidkaLgg...vlFlDEayaLve 389
                  ++ GPPGtGkt +Ar+va   aG+  +        s ++++  ++g  + +  +l  +a      ++F+DE+ a+  
  MMETSP1137-20121227|7540_1 224 AIMEGPPGTGKTLLARAVAGE-AGVPFV------SASGSEFVEMFVGVGASRVRDLFSQAKKNapcIVFIDEIDAIGG 294
                 6899**************975.677654......45678888888888888888888777653223788888777655 PP

>> TIGR00635  ruvB: Holliday junction DNA helicase RuvB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0   2.1e-06   0.00061      34      93 ..     225     292 ..     216     296 .. 0.73

  Alignments for each domain:
  == domain 1    score: 16.7 bits;  conditional E-value: 2.1e-06
   TIGR00635  34 llyGPPGlGkttlakiiakelgvklkitsgpalek......pgDlaailtaleegd..vlfiDeihrl 93 
                 ++ GPPG Gkt la+ +a e gv    +sg ++        ++ +  ++++ +++   ++fiDei ++
  MMETSP1137-20121227|7540_1 225 IMEGPPGTGKTLLARAVAGEAGVPFVSASGSEFVEmfvgvgASRVRDLFSQAKKNApcIVFIDEIDAI 292
                 689**********************9999998754222222344455555554443338999999776 PP

>> TIGR02639  ClpA: ATP-dependent Clp protease ATP-binding subunit ClpA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.8   0.0   0.00015     0.043     491     526 ..     225     260 ..     211     264 .. 0.89
   2 !    4.7   0.0    0.0051       1.5     264     294 ..     267     297 ..     260     301 .] 0.84

  Alignments for each domain:
  == domain 1    score: 9.8 bits;  conditional E-value: 0.00015
   TIGR02639 491 lfvGptGvGktelakqLaeelgvellrfDmseymek 526
                 ++ Gp G Gkt la+++a e gv ++    se+ e 
  MMETSP1137-20121227|7540_1 225 IMEGPPGTGKTLLARAVAGEAGVPFVSASGSEFVEM 260
                 679*****************************9985 PP

  == domain 2    score: 4.7 bits;  conditional E-value: 0.0051
   TIGR02639 264 erlkevveeiekeedailfiDeihtivgaga 294
                  r++++ ++ +k+   i+fiDei +i g  a
  MMETSP1137-20121227|7540_1 267 SRVRDLFSQAKKNAPCIVFIDEIDAIGGQRA 297
                 7999999999**************9977555 PP

>> TIGR00763  lon: ATP-dependent protease La
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.2   6.1e-06    0.0018     356     438 ..     224     298 ..     200     300 .. 0.74

  Alignments for each domain:
  == domain 1    score: 14.6 bits;  conditional E-value: 6.1e-06
   TIGR00763 356 lclvGPPGVGKtSlaksiAkalnrkfvrlslGGlkDvaeikGHRrtYvGalPGkiiqglkkvktenP.lillDEiDKlgssvrG 438
                  ++ GPPG GKt la+++A   +  fv  s  G + v         +vG    ++ + + ++k++ P ++++DEiD +g + +G
  MMETSP1137-20121227|7540_1 224 AIMEGPPGTGKTLLARAVAGEAGVPFVSAS--GSEFV-------EMFVGVGASRVRDLFSQAKKNAPcIVFIDEIDAIGGQRAG 298
                 3579**********************9666..54444.......3578888899999999999999944579999999977666 PP

>> TIGR02881  spore_V_K: stage V sporulation protein K
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   7.2e-06    0.0021      45     117 ..     224     292 ..     187     299 .. 0.82

  Alignments for each domain:
  == domain 1    score: 15.0 bits;  conditional E-value: 7.2e-06
   TIGR02881  45 mifkGnPGtGkttvarllaklfkelnvlskGhlieveradlvGeyiGhtaqktrevi...kkalGGvlfideaysl 117
                  i++G PGtGkt +ar +a    e +v     ++ +  +++v  ++G  a ++r++    kk    ++fide  ++
  MMETSP1137-20121227|7540_1 224 AIMEGPPGTGKTLLARAVAG---EAGV----PFVSASGSEFVEMFVGVGASRVRDLFsqaKKNAPCIVFIDEIDAI 292
                 5889************9985...7776....5899999****************9872225556789****97654 PP

>> TIGR02173  cyt_kin_arch: putative cytidylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   0.0   3.9e-05     0.011       4      31 ..     225     252 ..     224     260 .. 0.91

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 3.9e-05
   TIGR02173   4 visGpPGsGkttvakilaeklslklisa 31 
                 ++ GpPG+Gkt +a+ +a + ++ ++sa
  MMETSP1137-20121227|7540_1 225 IMEGPPGTGKTLLARAVAGEAGVPFVSA 252
                 578***********************98 PP

>> TIGR02640  gas_vesic_GvpN: gas vesicle protein GvpN
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.7   0.0   4.9e-05     0.014      26      56 ..     226     256 ..     216     274 .. 0.87

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 4.9e-05
   TIGR02640  26 lrGPaGtGktslalhvakkrdrPvvllnGda 56 
                 + GP GtGkt la++va + + P v   G +
  MMETSP1137-20121227|7540_1 226 MEGPPGTGKTLLARAVAGEAGVPFVSASGSE 256
                 78*********************99988876 PP

>> TIGR00368  TIGR00368: Mg chelatase-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   0.0   0.00026     0.075     215     233 ..     225     243 ..     195     253 .. 0.92

  Alignments for each domain:
  == domain 1    score: 9.4 bits;  conditional E-value: 0.00026
   TIGR00368 215 lllGPPGsGktllakrlqg 233
                 ++ GPPG+Gktlla+ + g
  MMETSP1137-20121227|7540_1 225 IMEGPPGTGKTLLARAVAG 243
                 678***********99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (301 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       207  (0.0504632); expected 82.0 (0.02)
Passed bias filter:                      192  (0.0468064); expected 82.0 (0.02)
Passed Vit filter:                        51  (0.012433); expected 4.1 (0.001)
Passed Fwd filter:                        14  (0.00341297); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.41u 0.18s 00:00:00.59 Elapsed: 00:00:00.42
# Mc/sec: 945.92
//
Query:       MMETSP1137-20121227|7541_1  [L=368]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.1e-22   76.1   0.0      9e-22   75.3   0.0    1.4  1  TIGR04180 EDH_00030: NAD dependent epimerase/dehydratase, LLPSF_EDH_00030 family
    5.2e-20   69.7   0.0    7.1e-20   69.2   0.0    1.2  1  TIGR02197 heptose_epim: ADP-glyceromanno-heptose 6-epimerase
    4.8e-16   56.6   0.0    2.2e-15   54.4   0.0    2.2  1  TIGR01181 dTDP_gluc_dehyt: dTDP-glucose 4,6-dehydratase
    2.1e-14   50.9   0.0    1.1e-13   48.5   0.0    2.2  1  TIGR01179 galE: UDP-glucose 4-epimerase
    1.1e-13   48.7   0.0    1.5e-13   48.1   0.0    1.3  1  TIGR03466 HpnA: hopanoid-associated sugar epimerase
    3.9e-09   34.3   0.0    0.00064   17.2   0.0    2.2  2  TIGR01777 yfcH: TIGR01777 family protein
  ------ inclusion threshold ------
      0.022   11.7   0.0       0.19    8.6   0.0    2.0  2  TIGR01214 rmlD: dTDP-4-dehydrorhamnose reductase


Domain annotation for each model (and alignments):
>> TIGR04180  EDH_00030: NAD dependent epimerase/dehydratase, LLPSF_EDH_00030 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.3   0.0   1.5e-24     9e-22       1     294 [.      20     314 ..      20     317 .. 0.79

  Alignments for each domain:
  == domain 1    score: 75.3 bits;  conditional E-value: 1.5e-24
   TIGR04180   1 vlvtGadGfiGshlvealvekGaevralvlynsfnswGwldevekevkkeievvlGdirdaesvkkavkgvdvvfhlaalia.iPy..syvapesyvetnvkGtlnvlqaardlevekvvhtstsevyGtaqyvP..........idekhplqaqsPysaskigadqlalsfyrsfelPvaivrPfntyGPr...qsaraviPtiitq..ilsgkkkiklGslsPtrdfnyvkdtvegfiavaesdkavGevinigsnfeisigdtvkliaeilgkeveivtdeerlrPekseverlladnskikeltgwkp 294
                 + vtGa+Gfi shl+ +l ++G+ vr +  +   n++   ++++    +  e ++ d+r+ e +kkav+g++  f laa ++ + +  s ++   y  t    ++n+ +a r ++++++  +s++ +y  ++ +            d++ p q+q  y   k+ +++l + f + f +   i r  n yGP    +  r   P+   +  i ++++    G+ + tr f y+ d+veg+++++ sd    + +nigs+ ++s+++++++++ i +k++ i     r  P    v+   +dn+ ik+++gw+p
  MMETSP1137-20121227|7541_1  20 ICVTGAGGFIASHLARRLKAEGHYVRGVD-WKE-NEYMKPEDFC----D--EFLNLDLRHIENCKKAVEGMEWCFNLAADMGgMGFiqSNHSRILYNSTM--ISFNMAEAGRSAGIKRFWYASSACIYPESKQLSedldgasglkEDDAWPAQPQDAYGLEKLVTEELLMHFDADFGMEARIGRFHNIYGPYgtwKGGREKAPAAFCRkgITATEDFEMWGNGKQTRSFCYIDDAVEGILRLMVSDYK--KPLNIGSDEQVSMNEMAEIVMAIGNKKLPI-----RHIPGPEGVRGRNSDNTLIKQVLGWAP 314
                 579***********************964.333.3333333333....2..56788***********************875244411444555555554..479********************9998877654222222221145678****************************************972225678889987654226666666667***********************99975..89************************9998.....567777788888889999999999987 PP

>> TIGR02197  heptose_epim: ADP-glyceromanno-heptose 6-epimerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.2   0.0   1.2e-22   7.1e-20       1     279 [.      20     300 ..      20     331 .. 0.80

  Alignments for each domain:
  == domain 1    score: 69.2 bits;  conditional E-value: 1.2e-22
   TIGR02197   1 iivTGgaGfiGsnlvaalnekgetdilvvDklrkge.kllnlkdeeiadyidkeellerlekeelkkveavfHegAisd...TteldgellmenNyeyskellelcaekevk.liYASSAavYGdseeefreekele..........rPlNvYgySKllfDelvrkevlkekksaqvvGlryFNVyGprEehKgkm.aSvvfklfnqikkekkvkLFksseqlkdGeqlRDFvyvkDvvkvnllllekkeksGifnvGtgkarsfndlaaavvkalgkdekieyidmPealrgky 279
                 i vTG+ Gfi s l+ +l+ +g + +  vD  +++  k  ++ de +  ++ + e +++  ++    +e+ f  +A       ++ +++ ++ n + +s ++ e+  + ++k + YASSA +Y +s++  ++ +  +          +P+ +Yg  Kl+ +el+++  + +   +  +G r+ N+yGp  ++Kg   ++ ++ + + i++++  +++       +G+q+R F y++D v+ +l l+ ++      n+G+ +  s n++a++v++  +k+  i++i+ Pe +rg+ 
  MMETSP1137-20121227|7541_1  20 ICVTGAGGFIASHLARRLKAEG-HYVRGVDWKENEYmKPEDFCDEFLNLDLRHIENCKKAVEG----MEWCFNLAADMGgmgFIQSNHSRILYNSTMISFNMAEAGRSAGIKrFWYASSACIYPESKQLSEDLDGASglkeddawpaQPQDAYGLEKLVTEELLMHFDA-DFGMEARIG-RFHNIYGPYGTWKGGReKAPAAFCRKGITATEDFEMWG------NGKQTRSFCYIDDAVEGILRLMVSD-YKKPLNIGSDEQVSMNEMAEIVMAIGNKKLPIRHIPGPEGVRGRN 300
                 78******************99.6799999877666678888888777777776666666554....6666666654430114678999999999************99985489*********88887777666667889999999*****************95443.333335566.*************8651455666677788888777665......45667*******************7.55567*******************999999***********9974 PP

>> TIGR01181  dTDP_gluc_dehyt: dTDP-glucose 4,6-dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.4   0.0   3.7e-18   2.2e-15       3     314 ..      21     332 ..      19     338 .. 0.71

  Alignments for each domain:
  == domain 1    score: 54.4 bits;  conditional E-value: 3.7e-18
   TIGR01181   3 LvtGGaGfiGsnfvryileetpdaevvvlDkLtyagnkenlkdledeerysfvkgdiadrelverllkeedvdavvnfaaeshvDrsisepeafietn.vvGtytlleavrkelkevrllhistDevyGdlek...d.d..aeftett..plaPssPysaskaasdllvrayartyglpvlitrcsnnyGpyqf....pekliPllitn.alagkklpvyGdGqqvrDwlyveDhcraielvlekgrvgevyniggeeertnlevvkiilelldkdedlieyvedrpGhDrryaldaskikreLgwkpkvtfeeglrktvkWylen 314
                  vtG  Gfi s + r + +e  ++ v  +D      + ++ +d  d    +f++ d+   e+ ++ ++ ++     n+aa+      i++ +  i  n  +  + + ea r+     r+   s   +y + ++   d d     +e +  p +P+  y   k  ++ l+  +   +g++++i r  n yGpy       ek    ++++ ++a +   ++G+G+q r + y++D +++i  ++     ++  nig++e+ +  e+ +i++  +++++  i+++    G   r + d + ik+ Lgw+p +++ egl  t  W +++
  MMETSP1137-20121227|7541_1  21 CVTGAGGFIASHLARRLKAEG-HY-VRGVDWKE--NEYMKPEDFCD----EFLNLDLRHIENCKKAVEGME--WCFNLAADMGGMGFIQSNHSRILYNsTMISFNMAEAGRSA-GIKRFWYASSACIYPESKQlseDlDgaSGLKEDDawPAQPQDAYGLEKLVTEELLMHFDADFGMEARIGRFHNIYGPYGTwkggREKAPAAFCRKgITATEDFEMWGNGKQTRSFCYIDDAVEGILRLMVS-DYKKPLNIGSDEQVSMNEMAEIVM-AIGNKKLPIRHIPGPEGVRGRNS-DNTLIKQVLGWAPGTSLREGLGYTYAWIKDQ 332
                 566666666666666554443.33.44444211..11112222222....566777777777777777555..7777777777666666655444333155667788887773.3345888888888865443111111212234444225689999***********************************753333689888888774667899***********************998765.667889*******99999998766.67889999*********999987.7789***********************9876 PP

>> TIGR01179  galE: UDP-glucose 4-epimerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.5   0.0   1.9e-16   1.1e-13       1     328 [.      19     332 ..      19     336 .. 0.81

  Alignments for each domain:
  == domain 1    score: 48.5 bits;  conditional E-value: 1.9e-16
   TIGR01179   1 kiLvtGgaGyiGshvvrqllekgkevvvlDnlskgskealkalekitevklvegdladkekleavleeekidaviHfaaliavgEsvk.ePlkYYennvvntleLleamqkagvkkliFsssaavYgesekvp........isEes..plnpinpYGrsklmvErilkdlkkadkelkvviLRYFnvaGAdeegeiGeasknathliklvaevavgkrekleifGtdyptkDGtcvRDyiHveDlaeaHlaalealeeggesevynlGagqgfsvkevieavkkvsgkdikveladrRaGDpaslvadaskikrelgwkpkyddLeeiiksawdWekkl 328
                 ki vtG+ G+i sh +r l+++g+ v  +D   +   +     +     ++++ dl+  e+ ++++e   ++    +aa +     ++ +  +   n ++ ++++ ea ++ag+k++ ++ssa +Y es++++        ++E+   p +p++ YG  kl++E++l  + +ad +++  i R+ n+ G     + G+++ +a+      ++  +  +e +e++G+      G   R + +++D  e+ l+ +     ++ ++ +n+G+++  s+ e+ e v ++ +k+++++  +  +G      +d+  ik++lgw+p    L+e +  +++W k +
  MMETSP1137-20121227|7541_1  19 KICVTGAGGFIASHLARRLKAEGHYVRGVDWKENEYMKPEDFCD-----EFLNLDLRHIENCKKAVEG--MEWCFNLAADMGGMGFIQsNHSRILYNSTMISFNMAEAGRSAGIKRFWYASSACIYPESKQLSedldgasgLKEDDawPAQPQDAYGLEKLVTEELLMHF-DADFGMEARIGRFHNIYGPYGTWKGGREKAPAA-----FCRKGITATEDFEMWGN------GKQTRSFCYIDDAVEGILRLMV----SDYKKPLNIGSDEQVSMNEMAEIVMAIGNKKLPIRHIPGPEGVRG-RNSDNTLIKQVLGWAPGTS-LREGLGYTYAWIKDQ 332
                 689***********************999976655544444444.....7**************9975..4556677766654444431334555689999**************************999865333333336676422678******************9.778***************999988888777764.....56666677899*****8......666699******9999776554....455688*********************************999665.5799************998.999999999998765 PP

>> TIGR03466  HpnA: hopanoid-associated sugar epimerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.1   0.0   2.6e-16   1.5e-13       3     118 ..      20     138 ..      18     189 .. 0.85

  Alignments for each domain:
  == domain 1    score: 48.1 bits;  conditional E-value: 2.6e-16
   TIGR03466   3 vlvtGatGFvGsavvrllleeGeevrvlvrktsdrrnleeldvEiveGdlkdeaslkkalkGcealfHvAAdy...rlwakdpeelykanvegtravleaAleagvervvytssvatlg 118
                   vtGa+GF+ s+++r l++eG+ vr +  k+ +    e++  E ++ dl+  +  kka++G+e  f +AAd     + + +++++  +    + ++ ea ++ag++r  y+ss  +  
  MMETSP1137-20121227|7541_1  20 ICVTGAGGFIASHLARRLKAEGHYVRGVDWKENEYMKPEDFCDEFLNLDLRHIENCKKAVEGMEWCFNLAADMggmGFIQSNHSRILYNSTMISFNMAEAGRSAGIKRFWYASSACIYP 138
                 679*********************************************************************7332578888888888889999*******************977643 PP

>> TIGR01777  yfcH: TIGR01777 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   4.3e-06    0.0025       1      65 [.      20      89 ..      20     153 .. 0.66
   2 !   17.2   0.0   1.1e-06   0.00064     188     245 ..     229     285 ..     220     330 .. 0.89

  Alignments for each domain:
  == domain 1    score: 15.3 bits;  conditional E-value: 4.3e-06
   TIGR01777  1 vlitGgtGliGralveelekkghevviltrskekekeekkesakevaee......aeeealegvdavinLa 65
                + +tG+ G+i+++l+++l+++gh v+ +  ++++  + +++  +e+ +       + ++a+eg++ + nLa
  MMETSP1137-20121227|7541_1 20 ICVTGAGGFIASHLARRLKAEGHYVRGVDWKENEYMKPEDFC-DEFLNLdlrhieNCKKAVEGMEWCFNLA 89
                689**********************98887776544443332.2333333344433344667777777776 PP

  == domain 2    score: 17.2 bits;  conditional E-value: 1.1e-06
   TIGR01777 188 lGsGrqwlsWihleDlvklilfaleneevsGvvNataPepvrnkefakalakalhrpa 245
                  G+G+q  s+  ++D+v+ il ++ + +++ ++N+ + e+v+++e+a+ +    ++  
  MMETSP1137-20121227|7541_1 229 WGNGKQTRSFCYIDDAVEGILRLMVS-DYKKPLNIGSDEQVSMNEMAEIVMAIGNKKL 285
                 59*********************998.99******************98877666554 PP

>> TIGR01214  rmlD: dTDP-4-dehydrorhamnose reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   0.0   0.00032      0.19       1      43 [.      19      61 ..      19      82 .. 0.83
   2 ?    0.9   0.0     0.073        43     112     156 ..     153     203 ..     146     288 .. 0.69

  Alignments for each domain:
  == domain 1    score: 8.6 bits;  conditional E-value: 0.00032
   TIGR01214  1 rilitGakgqlgreLveqlskegsevvaltrsqldledpeale 43
                +i +tGa+g ++++L+++l+ eg  v+ ++ ++ +  +pe  +
  MMETSP1137-20121227|7541_1 19 KICVTGAGGFIASHLARRLKAEGHYVRGVDWKENEYMKPEDFC 61
                799******************9999999998877777776655 PP

  == domain 2    score: 0.9 bits;  conditional E-value: 0.073
   TIGR01214 112 Yreed..etnPlnvYgqsKlaGEvavraase....kalivRtswlygasgg 156
                  +e+d  +  P++ Yg  Kl+ E +  +       +a i R   +yg +g+
  MMETSP1137-20121227|7541_1 153 LKEDDawPAQPQDAYGLEKLVTEELLMHFDAdfgmEARIGRFHNIYGPYGT 203
                 45555224789*********9998876543323336677777777776665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (368 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       103  (0.0251097); expected 82.0 (0.02)
Passed bias filter:                      100  (0.0243784); expected 82.0 (0.02)
Passed Vit filter:                        23  (0.00560702); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.37u 0.16s 00:00:00.53 Elapsed: 00:00:00.42
# Mc/sec: 1156.48
//
Query:       MMETSP1137-20121227|7542_1  [L=659]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.1e-25   87.5  27.7    3.1e-25   86.9  19.2    1.2  1  TIGR00813 sss: transporter, solute:sodium symporter (SSS) family
    4.5e-24   82.8  21.3    6.7e-24   82.3  14.8    1.2  1  TIGR02121 Na_Pro_sym: sodium/proline symporter
    1.5e-18   64.9  16.8    1.9e-18   64.6  11.6    1.2  1  TIGR02119 panF: sodium/pantothenate symporter
    1.9e-16   57.4  20.8    8.7e-12   42.1   1.9    2.2  2  TIGR03648 Na_symport_lg: probable sodium:solute symporter, VC_2705 subfamily
  ------ inclusion threshold ------
      0.093    7.9   2.3       0.13    7.4   1.6    1.1  1  TIGR01271 CFTR_protein: cystic fibrosis transmembrane conductor regulator (CFTR)


Domain annotation for each model (and alignments):
>> TIGR00813  sss: transporter, solute:sodium symporter (SSS) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.9  19.2   3.8e-28   3.1e-25       2     396 ..      55     435 ..      54     455 .. 0.79

  Alignments for each domain:
  == domain 1    score: 86.9 bits;  conditional E-value: 3.8e-28
   TIGR00813   2 flagrslgglvvaaslvasnisasqllGlpgeayasGlaiiflelaal...vllivlgllfvpvyikagvltmpeylekRFgkrilrilsvlililviflkisvdlfsgalllelvlGld..lylsllllalitilYtviGGlkAvvwtDtlqavimivgvlilpvvafsevggles.vvekakqaaptvvsvddllkleldpltsdlpwgalvfGliivallywcldqvivqRllaaksaksakkgvlisgvlkllpmllavlpGliaralytdvdpalagav.qqasdqaypllvvellppglaglflavllaAvlStlssilnsastvfteDlYkkiirkaaekekkivsrgrvavlvaiviaivvaaaqsgqvlqlvqsafgilgapllavfvLglfw 396
                 f+ag+slg++v+ ++++as  s+ +++G+p ea+++G+  + +  + l   + ++ ++     + + ++ ++  ++++ RF +++lr++ +++l++ ++++++++ +     +++++Gl+     + +++ ++++ +  iGGl++v++tD  q+++mi+++++++       gg++s +++  +   p ++ +  + ++++   t  l w   ++ l++             qR++a+ + ks+k +  + ++   l ml+ v+ G i++ l +d     +g+v ++ + +++ l+    ++ +   l+l   +aA++St++s+l++++ +++  +    +++a + +++++ +++v+ ++++++a+vva+   g + +l    +g+    +++ f++glf 
  MMETSP1137-20121227|7542_1  55 FVAGKSLGTFVTVMTIFASLFSGYTMVGVPNEAFRNGFTALRWIPSKLfmaFGYMGTSPRLRRISLIRHYHSPLDFVTDRFRSQLLRYVLFIVLLVPSIIYLAAQPITLKGNFNDLFGLEdnNVIAPVAICAFILALEWIGGLNVVAYTDAAQGILMIIAFVLMSSTLAALYGGYNSdIFNPTTYPEP-KFFQVPSAETQFAMWTFSLQW-ISFLALPHF-----------QQRTYASGNFKSMKLAYGVITLAPWLTMLVGVFSGTIGVYLLQD-----EGNVaNPFTAIVAKLMSASAFGYISGLLILVGSIAAIISTADSLLIATAHMIMSEVVCVAFPNA-S-QARVAFASKVVSFFVMALALVVALTDDGALSDLANVQNGMTL-QAVPTFLIGLFA 435
                 89***********************************5554444333300033333333344455667789999*******************************9999999*******61145556677777788889***********************************66515555554444.223444555555555566777.566777888...........8*****************************************87.....3333034445555555555566666666777789***********************9666655.5.5****************************9999888777655.56899*****95 PP

>> TIGR02121  Na_Pro_sym: sodium/proline symporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.3  14.8   8.2e-27   6.7e-24      27     437 ..      50     460 ..       9     496 .. 0.78

  Alignments for each domain:
  == domain 1    score: 82.3 bits;  conditional E-value: 8.2e-27
   TIGR02121  27 nledyvlggrslgpfvaalsagasdmsgWlllGlPGalyvtGlsel.wiaiGlliGayinwklvakrlrvytevakdaitlPdflekrledkskvlrivsaliilvfftlytssGlvaGgklfesafGldyklalligali..vviytflGGflavswtdlvqgllmlvalvlvPivallklgg.lseileaveaidpekldllkgasviai.isllaWGlGyfGqPhiivrfmaiksakelkkarligisWmilsllGavlvglvGiayvekvpgvevadkekifillskvlfnPliaGl.llaailaaimstissqllvsssalaedlykallkkeasekelvlvgrlsvlvvaiiaivlalnpdssvlelvsyaWaGfGaafgpvvllslywk.rltragal..agmvigavtvivw 437
                 ++e+++++g+slg+fv+ ++  as  sg+ ++G+P   +  G+++l wi   l + a   ++  ++rlr  + +++    l df+++r+   s++lr v  +++lv  ++y ++  ++    f+  fGl+ +  +  +a++  ++   ++GG   v++td+ qg+lm++a+vl+        gg  s+i++  +  +p+ +++ +  +  a+   +l W + +   Ph   r  a  + k++k a  + +    l++l  v+ g +G+  ++++++v+   +  +  l+s   f  +i+Gl +l   +aai+st +s l+ ++  ++ ++   +   +as+  +   +++  + v+ +a+v+al+ d  + +l ++   G+     p  l+ l+   ++t ++ +   g  +g +t +v 
  MMETSP1137-20121227|7542_1  50 EMENHFVAGKSLGTFVTVMTIFASLFSGYTMVGVPNEAFRNGFTALrWIPSKLFM-A-FGYMGTSPRLRRISLIRHYHSPL-DFVTDRFR--SQLLRYVLFIVLLVPSIIYLAAQPITLKGNFNDLFGLEDNNVIAPVAICafILALEWIGGLNVVAYTDAAQGILMIIAFVLMSSTLAALYGGyNSDIFNPTTYPEPKFFQVPSAETQFAMwTFSLQW-ISFLALPHFQQRTYASGNFKSMKLAYGVITLAPWLTMLVGVFSGTIGVYLLQDEGNVANPFTAIVAKLMSASAFG-YISGLlILVGSIAAIISTADSLLIATAHMIMSEVVC-VAFPNASQARVAFASKVVSFFVMALALVVALTDDGALSDL-ANVQNGMTLQAVPTFLIGLFATpNFTPHAWViaLGAAVGFITTVVI 460
                 57899**************************************987599888876.4.479999********777665554.9******6..89************************999********99988776666511556678**********************9998665555555168999*************9887755551567888.89***********************988777778999999*********99998755444445555666667775.67776157899**********999999999998875.55678999999999***9999999*******999887777.5667888888888888888865233333322003444555544443 PP

>> TIGR02119  panF: sodium/pantothenate symporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.6  11.6   2.3e-21   1.9e-18      27     385 ..      46     406 ..      11     459 .. 0.79

  Alignments for each domain:
  == domain 1    score: 64.6 bits;  conditional E-value: 2.3e-21
   TIGR02119  27 ktdsflqeyflGnrslgGfvlamtlvatyvsassfigGpGiayklG...lGwvllamiqvptvylvlgvlGkkfailarklnavtlvdllkaryknkllvllsslsllvfllsaivaqfiGGarllesltGlsyltalllfsl..svliyvliGGfravvltdalqgivmllgtiilliavikaggGve.kiveklkeidpnlvtpfgadgsldkafvasfwilvgiGvvglpqiavralsykdskalhraliigtivvgilmlgmhlvGvlgravlpd...lkvs.dkvipllalkvlppilaGif.laaplaaimstvdsllllssstlikdlylnylekeakekkvkkisllitlllgllvllaalk 385
                 ++d  ++++f+ ++slg fv  mt+ a+  s  +++g p  a++ G   l w+  + + ++ +y+  +   ++++++ r+++  +  d++ +r++++ll ++  ++llv  +  ++aq i     ++ l Gl  ++ +   ++   +l    iGG+  v+ tda qgi+m+++ +++  ++    gG + +i +  +  +p++ +  +a+     +f +  + l  i  ++lp+   r+ +  + k+++ a  + t+   + ml   + G +g  +l d   +  +   ++  l+     ++++G++ l + +aai+st dsll+ ++ +++ ++   +++ +a++ +v+  s ++++++ +l l++al 
  MMETSP1137-20121227|7542_1  46 DGDGEMENHFVAGKSLGTFVTVMTIFASLFSGYTMVGVPNEAFRNGftaLRWI-PSKLFMAFGYMGTSPRLRRISLI-RHYH--SPLDFVTDRFRSQLLRYVLFIVLLVPSIIYLAAQPITLKGNFNDLFGLEDNNVIAPVAIcaFILALEWIGGLNVVAYTDAAQGILMIIAFVLMSSTLAALYGGYNsDIFNPTTYPEPKFFQVPSAET----QFAMWTFSLQWISFLALPHFQQRTYASGNFKSMKLAYGVITLAPWLTMLVGVFSGTIGVYLLQDegnVANPfTAIVAKLMSASAFGYISGLLiLVGSIAAIISTADSLLIATAHMIMSEVVCVAFP-NASQARVAFASKVVSFFVMALALVVALT 406
                 23446899************************************993323454.46666777777777777888877.4444..457*********************************************98876655444004555678********************976655544444566652688999999*****9999988....55555556666789********************99988888888888888899999999998722233332468889999999******752789****************99999999777776.678899***************9999986 PP

>> TIGR03648  Na_symport_lg: probable sodium:solute symporter, VC_2705 subfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.1   1.9   1.1e-14   8.7e-12      23     195 ..      50     227 ..      47     236 .. 0.79
   2 !   20.8   7.1     3e-08   2.4e-05     362     483 ..     340     463 ..     319     492 .. 0.78

  Alignments for each domain:
  == domain 1    score: 42.1 bits;  conditional E-value: 1.1e-14
   TIGR03648  23 stkefyvagrkvpavanGmAtaadWmsaAsfismagliallGydglaylmGWtgGyvlla...lllApylRkfg...kftvp.dfvgdRyysktaRlvaviaailisftYvvgqirgvGvvfsrflevdielgv..liglavvlvyavlgGmkgvtytqvaqyvvlivaylvpvvflslklt 195
                 ++++++vag+++ +++  m + a  +s    +++      +G+++l ++       +++a   +   p lR+ +   ++  p dfv dR+ s++ R v  i++++ s++Y+++q   +   f  +++++ +  +  +   a +l+   +gG+  v+yt +aq +++i+a+++    l++  +
  MMETSP1137-20121227|7542_1  50 EMENHFVAGKSLGTFVTVMTIFASLFSGYTMVGVPNEAFRNGFTALRWIPS----KLFMAfgyMGTSPRLRRISlirHYHSPlDFVTDRFRSQLLRYVLFIVLLVPSIIYLAAQPITLKGNFNDLFGLEDNNVIapVAICAFILALEWIGGLNVVAYTDAAQGILMIIAFVLMSSTLAALYG 227
                 567889999999999999999999999999999999999999988876643....3333311144678888875443677666*******************************8888888888877755444411444567888999************************9988887655 PP

  == domain 2    score: 20.8 bits;  conditional E-value: 3e-08
   TIGR03648 362 via.lvaAGglaAAlstaaGLllvissaisHDllkkllnpkasekkrllvarvallvviviaaylalnkpgfiaqvvalAFglaaaslFpalvlGifwkra.nkegai..agmlaGllvtllyivl 483
                 +++ l+  G++aA +sta+ Ll++ +  i  +++     p+as+++  ++++v+ + v+++a ++al++ g ++++  +  g++ +++ p++++G+f     + ++ +  +g  +G+++t++  ++
  MMETSP1137-20121227|7542_1 340 ISGlLILVGSIAAIISTADSLLIATAHMIMSEVVCV-AFPNASQARVAFASKVVSFFVMALALVVALTDDGALSDLANVQNGMTLQAV-PTFLIGLFATPNfTPHAWViaLGAAVGFITTVVINYT 463
                 55525789*********************9999875.569******************************************998875.********87541433333113555555555443333 PP

>> TIGR01271  CFTR_protein: cystic fibrosis transmembrane conductor regulator (CFTR)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   1.6   0.00016      0.13     938    1043 ..     276     376 ..     241     403 .. 0.87

  Alignments for each domain:
  == domain 1    score: 7.4 bits;  conditional E-value: 0.00016
   TIGR01271  938 llalgflrglplvhtlltvskrlhkkmlhsvlqapmavlntlkagrilnrfskdiaiiddllpltlfdliqlllivlgaiavvsvlqpyilvaaipvavifivlra 1043
                    a g ++ + l + ++t++  l   ml  v+ + + v+     g++ n f+   ai+  l+  + f +i  lli++g+ia++      +l+a+  +++  +v  a
  MMETSP1137-20121227|7542_1  276 TYASGNFKSMKLAYGVITLAPWL--TMLVGVFSGTIGVYLLQDEGNVANPFT---AIVAKLMSASAFGYISGLLILVGSIAAIISTADSLLIATAHMIMSEVVCVA 376 
                  5688999999999****999988..6*************************6...89999*********************9999999999999998887766544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (659 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       211  (0.0514383); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.52u 0.13s 00:00:00.65 Elapsed: 00:00:00.70
# Mc/sec: 1242.58
//
Query:       MMETSP1137-20121227|7543_1  [L=240]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (240 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       139  (0.0338859); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.16s 00:00:00.38 Elapsed: 00:00:00.47
# Mc/sec: 673.99
//
Query:       MMETSP1137-20121227|7544_1  [L=455]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (455 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       131  (0.0319356); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.16s 00:00:00.47 Elapsed: 00:00:00.36
# Mc/sec: 1668.20
//
Query:       MMETSP1137-20121227|7545_1  [L=345]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (345 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        98  (0.0238908); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.16s 00:00:00.44 Elapsed: 00:00:00.37
# Mc/sec: 1230.71
//
Query:       MMETSP1137-20121227|7546_1  [L=1045]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.5e-53  178.0   0.7    1.3e-19   68.0   0.0    4.2  4  TIGR03719 ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family
    2.7e-42  143.2   0.7    6.6e-13   46.3   0.0    4.9  5  TIGR02857 CydD: thiol reductant ABC exporter, CydD subunit
      1e-38  130.9   1.2    2.5e-11   40.4   0.0    4.1  4  TIGR03375 type_I_sec_LssB: type I secretion system ATPase
      1e-33  114.7   2.1    9.5e-12   42.6   0.0    4.3  4  TIGR01188 drrA: daunorubicin resistance ABC transporter, ATP-binding protein
    1.5e-33  114.0   2.2    3.6e-12   43.5   0.1    4.7  5  TIGR02868 CydC: thiol reductant ABC exporter, CydC subunit
    2.1e-33  113.6   0.6    2.9e-10   38.0   0.0    4.3  4  TIGR02673 FtsE: cell division ATP-binding protein FtsE
      1e-32  111.7   0.5    3.8e-12   44.1   0.0    3.8  3  TIGR03522 GldA_ABC_ATP: gliding motility-associated ABC transporter ATP-binding subunit GldA
    3.1e-32  109.6   0.8    5.5e-12   43.3   0.0    4.5  4  TIGR03873 F420-0_ABC_ATP: proposed F420-0 ABC transporter, ATP-binding protein
    3.7e-32  109.4   0.7    1.2e-12   45.6   0.0    4.2  4  TIGR00972 3a0107s01c2: phosphate ABC transporter, ATP-binding protein
    7.7e-31  105.0   0.0    3.1e-11   40.3   0.0    4.2  4  TIGR01842 type_I_sec_PrtD: type I secretion system ATPase
    1.1e-30  104.5   0.1    7.8e-13   46.2   0.0    4.3  4  TIGR03608 L_ocin_972_ABC: putative bacteriocin export ABC transporter, lactococcin 972 group
    3.6e-30  102.7   2.5    6.1e-09   33.4   0.0    4.4  4  TIGR01166 cbiO: cobalt ABC transporter, ATP-binding protein
    5.1e-30  102.7   0.1      3e-08   31.5   0.0    4.7  5  TIGR00960 3a0501s02: type II secretory pathway family protein
    7.4e-30  101.9   0.0    3.4e-09   34.3   0.0    4.3  4  TIGR03410 urea_trans_UrtE: urea ABC transporter, ATP-binding protein UrtE
      2e-29  100.7   0.3    1.7e-11   42.1   0.3    4.0  3  TIGR03740 galliderm_ABC: lantibiotic protection ABC transporter, ATP-binding subunit
    3.5e-29   99.8   0.0    1.6e-10   38.7   0.0    4.3  4  TIGR02315 ABC_phnC: phosphonate ABC transporter, ATP-binding protein
    4.7e-29   99.3   0.6    3.8e-08   30.9   0.0    4.2  4  TIGR03864 PQQ_ABC_ATP: ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system
      6e-28   95.7   0.1    2.8e-10   37.9   0.0    4.4  4  TIGR02211 LolD_lipo_ex: lipoprotein releasing system, ATP-binding protein
    1.4e-25   87.5   0.0    4.2e-07   26.4   0.0    4.1  4  TIGR03796 NHLM_micro_ABC1: NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein
    3.2e-25   86.5   0.1    9.9e-09   32.0   0.0    4.2  4  TIGR02203 MsbA_lipidA: lipid A export permease/ATP-binding protein MsbA
    3.8e-25   86.3   0.0    8.9e-08   28.9   0.0    4.1  4  TIGR03797 NHLM_micro_ABC2: NHLM bacteriocin system ABC transporter, ATP-binding protein
    1.5e-24   84.6   2.5      3e-09   34.6   0.0    4.2  3  TIGR01189 ccmA: heme ABC exporter, ATP-binding protein CcmA
    1.5e-24   84.2   0.1    1.2e-08   31.8   0.0    4.1  4  TIGR03269 met_CoM_red_A2: methyl coenzyme M reductase system, component A2
    1.5e-24   84.3   0.1    2.7e-11   40.9   0.1    3.7  3  TIGR01288 nodI: nodulation ABC transporter NodI
    1.7e-24   84.0   0.3    1.7e-08   31.0   0.0    3.3  3  TIGR00958 3a01208: antigen peptide transporter 2
    2.3e-24   84.1   0.0    2.6e-11   41.2   0.0    4.2  4  TIGR02142 modC_ABC: molybdate ABC transporter, ATP-binding protein
    2.8e-24   83.7   0.1    3.8e-10   37.5   0.0    4.2  4  TIGR02982 heterocyst_DevA: ABC exporter ATP-binding subunit, DevA family
    6.5e-24   82.6   0.2    2.2e-07   28.4   0.0    4.2  4  TIGR02769 nickel_nikE: nickel import ATP-binding protein NikE
    1.8e-23   81.1   0.0    1.9e-08   31.9   0.0    4.3  4  TIGR01978 sufC: FeS assembly ATPase SufC
    2.3e-23   80.9   0.2    1.1e-07   29.6   0.0    4.8  5  TIGR03771 anch_rpt_ABC: anchored repeat-type ABC transporter, ATP-binding subunit
    3.8e-23   80.2   0.8    7.6e-08   30.1   0.0    4.2  4  TIGR03411 urea_trans_UrtD: urea ABC transporter, ATP-binding protein UrtD
    4.1e-23   79.7   0.0    5.9e-08   29.6   0.0    3.5  4  TIGR02204 MsbA_rel: ABC transporter, permease/ATP-binding protein
    1.1e-22   78.1   0.1    9.7e-09   32.1   0.0    5.0  5  TIGR01193 bacteriocin_ABC: ABC-type bacteriocin transporter
    1.5e-22   78.1   0.1    5.5e-08   30.4   0.0    4.3  4  TIGR00968 3a0106s01: sulfate ABC transporter, ATP-binding protein
    3.9e-22   76.1   0.0    2.8e-08   30.3   0.0    4.1  4  TIGR01846 type_I_sec_HlyB: type I secretion system ATPase
    2.8e-21   73.7   0.1    3.4e-09   34.1   0.0    4.3  4  TIGR03005 ectoine_ehuA: ectoine/hydroxyectoine ABC transporter, ATP-binding protein EhuA
    2.6e-20   70.8   0.0    1.6e-07   29.0   0.0    4.2  4  TIGR01277 thiQ: thiamine ABC transporter, ATP-binding protein
    2.9e-20   70.5   0.1    1.5e-07   29.0   0.0    4.4  4  TIGR02324 CP_lyasePhnL: phosphonate C-P lyase system protein PhnL
    3.2e-20   69.9   0.2    1.6e-05   21.4   0.0    4.3  4  TIGR02633 xylG: D-xylose ABC transporter, ATP-binding protein
    8.1e-20   68.9   0.1    8.3e-08   29.4   0.0    4.1  4  TIGR02314 ABC_MetN: D-methionine ABC transporter, ATP-binding protein
    2.6e-18   64.2   0.7    2.5e-07   28.1   0.0    4.2  4  TIGR03265 PhnT2: putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein
    1.1e-17   62.3   0.7    6.8e-07   26.9   0.0    3.7  4  TIGR01184 ntrCD: nitrate ABC transporter, ATP-binding proteins C and D
    1.1e-17   62.0   0.7    1.2e-07   29.2   0.0    4.1  4  TIGR02770 nickel_nikD: nickel import ATP-binding protein NikD
    1.2e-17   61.5   0.3    7.1e-06   22.7   0.0    4.2  4  TIGR00955 3a01204: pigment precursor permease
    1.5e-17   61.5   0.9    1.9e-05   21.7   0.0    4.2  4  TIGR03258 PhnT: 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT
      3e-16   57.3   0.3    2.1e-05   21.6   0.0    4.3  4  TIGR01186 proV: glycine betaine/L-proline transport ATP binding subunit
    3.2e-16   56.9   0.0    4.3e-06   23.4   0.0    3.2  3  TIGR01192 chvA: glucan exporter ATP-binding protein
    5.4e-16   56.4   0.2    7.9e-06   23.0   0.0    3.5  3  TIGR01187 potA: polyamine ABC transporter, ATP-binding protein
    2.1e-15   53.1   0.1    6.1e-08   28.4   0.0    4.2  4  TIGR01271 CFTR_protein: cystic fibrosis transmembrane conductor regulator (CFTR)
    3.4e-15   53.7   0.4    1.7e-08   31.7   0.0    3.7  4  TIGR03415 ABC_choXWV_ATP: choline ABC transporter, ATP-binding protein
    3.6e-14   49.0   0.1    9.5e-06   21.1   0.0    3.4  3  TIGR00957 MRP_assoc_pro: multi drug resistance-associated protein (MRP)
    2.2e-13   45.8   0.2    0.00064   14.4   0.0    3.0  3  TIGR01257 rim_protein: rim ABC transporter
    1.1e-10   38.5   0.0     0.0038   13.5   0.0    4.2  4  TIGR00954 3a01203: peroxysomal long chain fatty acyl transporter
    1.3e-07   28.1   0.6     0.0011   15.1   0.1    2.8  2  TIGR00630 uvra: excinuclease ABC subunit A
    2.9e-06   23.9   0.0      0.028   10.8   0.0    2.8  3  TIGR01194 cyc_pep_trnsptr: cyclic peptide transporter
    3.4e-06   24.6   0.0       0.82    6.9   0.0    4.2  4  TIGR02323 CP_lyasePhnK: phosphonate C-P lyase system protein PhnK
     0.0043   12.5   0.0        1.5    4.1   0.0    3.6  4  TIGR00956 3a01205: pleiotropic drug resistance family protein


Domain annotation for each model (and alignments):
>> TIGR03719  ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.0   4.7e-05    0.0034     330     372 ..     417     459 ..     402     464 .. 0.92
   2 !   68.0   0.0   1.8e-21   1.3e-19     156     245 ..     529     619 ..     517     624 .. 0.93
   3 !   26.2   0.0   8.5e-09   6.1e-07       3      82 ..     658     740 ..     656     815 .. 0.65
   4 !   64.3   0.2   2.5e-20   1.8e-18     156     287 ..     884    1013 ..     832    1032 .. 0.84

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 4.7e-05
   TIGR03719 330 kafgdklliddlsfklpkggivGviGpnGaGkstlfklitgke 372
                  a+g+k+l+++ ++kl +g   G+ G n +Gk+ l++ i++++
  MMETSP1137-20121227|7546_1 417 LAYGNKVLLNQTQLKLKRGYRYGLCGKNDSGKTSLMRAIANQQ 459
                 589************************************9886 PP

  == domain 2    score: 68.0 bits;  conditional E-value: 1.8e-21
   TIGR03719 156 dakveklsGGekrrvalcrlllekPdlllldePtnhldaesvaWlekflkeykG.tvvavthdryfldnvaeWileldrGegipykgnyss 245
                  ++v +lsGG + ++al+r +l + d+llldePtnhld   v+W+  +l++ k  t ++v hd   ld+v+  +l++d  +   ykgn ++
  MMETSP1137-20121227|7546_1 529 TKQVGRLSGGWRMKLALVRAMLMRADILLLDEPTNHLDPGNVKWVIDYLTSLKSvTSIIVSHDIKVLDQVCTHVLQIDGLKLKQYKGNLTH 619
                 57899**********************************************9864789******************************875 PP

  == domain 3    score: 26.2 bits;  conditional E-value: 8.5e-09
   TIGR03719   3 yiytmkrvskvvpp.kkeilkdislsffpgakiGvlGlnGaGkstllkimaG.vdke.feGealaaegikvGyleqePkldee 82 
                 +i +m++++ ++p+  k  l+++++    +++   +G nGaGkst++k+++G ++ +  +Ge++ +++++v y++q      e
  MMETSP1137-20121227|7546_1 658 HIMKMTNITFTYPGaPKPQLTNVTVRVSLSTRAACIGANGAGKSTMIKLLTGeLEPDrGSGEVWRHPNCRVAYVAQHAFHHIE 740
                 57777777777776357778888888888888888888888888888888874444314678888888888888887543333 PP

  == domain 4    score: 64.3 bits;  conditional E-value: 2.5e-20
   TIGR03719  156 dakveklsGGekrrvalcrlllekPdlllldePtnhldaesvaWlekflkeykGtvvavthdryfldnvaeWileldrGegipykgnysswleqkekrleqeekeeaarkkalkkeleWvrsspkarqaksk 287 
                   +++  lsGG+k +v l+  + + P +++ldePtn+ld +s+  l + ++ y+G vv++ h+  f+d+v+  +  l+  +++  kg y +wle  +k   +++ke ++    l + ++  +++ ka +a  k
  MMETSP1137-20121227|7546_1  884 HTRMGALSGGQKVKVVLAAAMWNTPHIVILDEPTNYLDRDSLGALAEAIHAYDGGVVIISHNAQFVDQVCPEVWHLEN-HTLNLKGSY-DWLESANKEAVKQAKEAEEYVDGLGNTVKIAKKKKKASKAELK 1013
                  567789****************************************************************98888875.8899*****.6*****9999999999999999998888777777776665433 PP

>> TIGR02857  CydD: thiol reductant ABC exporter, CydD subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.0       1.5   1.1e+02      72     129 ..      33      92 ..      23      95 .. 0.76
   2 !   14.0   0.0   5.3e-05    0.0038     291     370 ..     378     457 ..     373     463 .. 0.75
   3 !   46.3   0.0   9.2e-15   6.6e-13     450     523 ..     526     598 ..     502     604 .. 0.86
   4 !   38.4   0.0   2.2e-12   1.6e-10     319     381 ..     657     720 ..     634     767 .. 0.83
   5 !   37.7   0.0   3.5e-12   2.5e-10     441     522 ..     872     951 ..     841     959 .. 0.76

  Alignments for each domain:
  == domain 1    score: -0.6 bits;  conditional E-value: 1.5
   TIGR02857  72 aaevksqlrerllekvaalGpavlqkkksgela...tlllegvdalddYfarylpqlvlav 129
                 a++ k+ l  +l +++a  G + ++ +++g+la   +++l++  + ++Y+a  lp  + ++
  MMETSP1137-20121227|7546_1  33 ATAKKDGLFVALAAEIADKGKTKAN-NRAGALAalrHIILKNAASFEPYVAPMLPSFIECA 92 
                 5566666777888889999888777.5666554222789****************998876 PP

  == domain 2    score: 14.0 bits;  conditional E-value: 5.3e-05
   TIGR02857 291 vaaaealvevld...aeeqpeaekapltaaassslelenvsvayegrkpalkevsltvepgelvalvGaSGaGKstllklllg 370
                 ++a +a++++l+   ++ ++e+ k+++++a+  +l     s+ay ++   l++ +l+++ g +++l+G+  +GK++l+++++ 
  MMETSP1137-20121227|7546_1 378 EKAPAAITKLLEscaKHVKIEEVKEEADDAE--QLCDCTFSLAYGNKV-LLNQTQLKLKRGYRYGLCGKNDSGKTSLMRAIAN 457
                 5555566666664215555555555555555..788888888888888.*****************************99875 PP

  == domain 3    score: 46.3 bits;  conditional E-value: 9.2e-15
   TIGR02857 450 teiGergagLSgGqrqRlaLArallrdapllllDEPtahLDaeteaevlealrelaegrtvllvaHrlalaela 523
                   + ++  +LSgG r +laL ra+l  a++lllDEPt hLD+   + v++ l + ++  t ++v+H+ +++ ++
  MMETSP1137-20121227|7546_1 526 ASLTKQVGRLSGGWRMKLALVRAMLMRADILLLDEPTNHLDPGNVKWVIDYLTS-LKSVTSIIVSHDIKVLDQV 598
                 456677779*******************************************99.578899******9987664 PP

  == domain 4    score: 38.4 bits;  conditional E-value: 2.2e-12
   TIGR02857 319 ssslelenvsvayegrk.palkevsltvepgelvalvGaSGaGKstllklllgfvepteGailv 381
                 ++ ++++n++++y+g+  p l++v ++v+  +++a +Ga GaGKst++kll g +ep++G+ +v
  MMETSP1137-20121227|7546_1 657 KHIMKMTNITFTYPGAPkPQLTNVTVRVSLSTRAACIGANGAGKSTMIKLLTGELEPDRGSGEV 720
                 34689*******************************************************9776 PP

  == domain 5    score: 37.7 bits;  conditional E-value: 3.5e-12
   TIGR02857 441 vkalpqgleteiGergagLSgGqrqRlaLArallrdapllllDEPtahLDaeteaevlealrelaegrtvllvaHrlalael 522
                 +++++   e     r   LSgGq+ ++ LA a+ ++ ++++lDEPt  LD+++  ++ ea++++  g  v++++H+ + + +
  MMETSP1137-20121227|7546_1 872 LNDVGLAPEFATHTRMGALSGGQKVKVVLAAAMWNTPHIVILDEPTNYLDRDSLGALAEAIHAYDGG--VVIISHNAQFVDQ 951
                 444444444445555567********************************************97655..8999999887654 PP

>> TIGR03375  type_I_sec_LssB: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.5   0.0   9.6e-05    0.0069     467     516 ..     409     458 ..     380     462 .. 0.87
   2 !   40.4   0.0   3.5e-13   2.5e-11     600     668 ..     531     598 ..     516     615 .. 0.85
   3 !   38.0   0.0   1.8e-12   1.3e-10     463     523 ..     657     717 ..     648     720 .. 0.93
   4 !   35.4   0.0   1.1e-11     8e-10     601     667 ..     887     951 ..     857     971 .. 0.88

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 9.6e-05
   TIGR03375 467 elknvsfkYpeeekaaLknvslkikpGekvaiiGriGsGKstllklllgl 516
                 +l +++f+    +k  L++++lk+k G + ++ G++ sGK++l++ ++++
  MMETSP1137-20121227|7546_1 409 QLCDCTFSLAYGNKVLLNQTQLKLKRGYRYGLCGKNDSGKTSLMRAIANQ 458
                 6778888888889999*****************************99875 PP

  == domain 2    score: 40.4 bits;  conditional E-value: 3.5e-13
   TIGR03375 600 rGesLSgGQrqavalaRallkdppillLDEPtsalDnsseekllerLkelladkTlvlvtHrtslLelv 668
                 +   LSgG r  +al Ra+l+  +illLDEPt++lD  + + +++ L +l +  T ++v+H  ++L+ v
  MMETSP1137-20121227|7546_1 531 QVGRLSGGWRMKLALVRAMLMRADILLLDEPTNHLDPGNVKWVIDYLTSL-KSVTSIIVSHDIKVLDQV 598
                 4458*******************************************975.678999*********855 PP

  == domain 3    score: 38.0 bits;  conditional E-value: 1.8e-12
   TIGR03375 463 kGeielknvsfkYpeeekaaLknvslkikpGekvaiiGriGsGKstllklllglyepteGs 523
                 k+ +++ n++f+Yp++ k+ L nv+++++   + a iG +G+GKst+ kll+g +ep++Gs
  MMETSP1137-20121227|7546_1 657 KHIMKMTNITFTYPGAPKPQLTNVTVRVSLSTRAACIGANGAGKSTMIKLLTGELEPDRGS 717
                 5568999***************************************************996 PP

  == domain 4    score: 35.4 bits;  conditional E-value: 1.1e-11
   TIGR03375 601 GesLSgGQrqavalaRallkdppillLDEPtsalDnsseekllerLkelladkTlvlvtHrtslLel 667
                   +LSgGQ+  v+la a+ + p+i++LDEPt+ lD+ s   l e+++++  d  +v+++H +++++ 
  MMETSP1137-20121227|7546_1 887 MGALSGGQKVKVVLAAAMWNTPHIVILDEPTNYLDRDSLGALAEAIHAY--DGGVVIISHNAQFVDQ 951
                 458***********************************99999999876..5669999999988765 PP

>> TIGR01188  drrA: daunorubicin resistance ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   0.0     0.018       1.3       3      38 ..     419     454 ..     417     458 .. 0.92
   2 !   42.6   0.0   1.3e-13   9.5e-12     119     198 ..     529     606 ..     524     619 .. 0.93
   3 !   24.5   0.0   4.3e-08   3.1e-06      10      52 ..     678     720 ..     674     727 .. 0.90
   4 !   37.7   0.0   4.1e-12     3e-10     117     258 ..     882    1015 ..     851    1037 .. 0.71

  Alignments for each domain:
  == domain 1    score: 6.1 bits;  conditional E-value: 0.018
   TIGR01188   3 ygefkAvdgvnlkveegevfglLGPnGAGKtttikm 38 
                 yg+ + +++ +lk+++g  +gl G n  GKt +++ 
  MMETSP1137-20121227|7546_1 419 YGNKVLLNQTQLKLKRGYRYGLCGKNDSGKTSLMRA 454
                 9999999************************99876 PP

  == domain 2    score: 42.6 bits;  conditional E-value: 1.3e-13
   TIGR01188 119 dkkvktysgGmrrrlelaasliaqPevlfLDEPtiGLDprtrraiwdlieelkkegvtilltthyleeadkladrvaiid 198
                  k+v+ +sgG r +l l+++++ + ++l LDEPt  LDp   + + d++++lk+  vt ++ +h+++  d+++ +v  id
  MMETSP1137-20121227|7546_1 529 TKQVGRLSGGWRMKLALVRAMLMRADILLLDEPTNHLDPGNVKWVIDYLTSLKS--VTSIIVSHDIKVLDQVCTHVLQID 606
                 589***********************************************9986..799999************998776 PP

  == domain 3    score: 24.5 bits;  conditional E-value: 4.3e-08
   TIGR01188  10 dgvnlkveegevfglLGPnGAGKtttikmLttllkPdsGtarv 52 
                  +v+++v+  +  + +G nGAGK+t+ik+Lt+ l+Pd G++ v
  MMETSP1137-20121227|7546_1 678 TNVTVRVSLSTRAACIGANGAGKSTMIKLLTGELEPDRGSGEV 720
                 578888888888999************************9988 PP

  == domain 4    score: 37.7 bits;  conditional E-value: 4.1e-12
   TIGR01188  117 aadkkvktysgGmrrrlelaasliaqPevlfLDEPtiGLDprtrraiwdlieelkkegvtilltthyleeadkladrvaiidkGkiiaedtpeeLKervgkevveverrdikelkkevsllaaelteslleleavevdsdkv 258 
                  a++ +++ +sgG++ ++ laa++ ++P+++ LDEPt  LD  +  a+ + i++    +  +++ +h+ + +d+++ +v  +++ ++  +++ + L  + +ke v+  +    e ++ v+ l  +++  +++ +a + +  k+
  MMETSP1137-20121227|7546_1  882 ATHTRMGALSGGQKVKVVLAAAMWNTPHIVILDEPTNYLDRDSLGALAEAIHA---YDGGVVIISHNAQFVDQVCPEVWHLENHTLNLKGSYDWLE-SANKEAVKQAK----EAEEYVDGLGNTVKIAKKKKKASKAELKKI 1015
                  56778999********************************8888887777765...56788999****************************9998.67777777333....333333333333332222222223333333 PP

>> TIGR02868  CydC: thiol reductant ABC exporter, CydC subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0         4   2.9e+02      96     139 ..     127     170 ..     126     183 .. 0.88
   2 !    7.5   0.0    0.0041       0.3     324     382 ..     399     456 ..     367     461 .. 0.73
   3 !   43.5   0.1   5.1e-14   3.6e-12     463     529 ..     526     591 ..     505     592 .. 0.87
   4 !   31.5   0.0   2.2e-10   1.6e-08     329     392 ..     654     718 ..     636     739 .. 0.87
   5 !   27.2   0.0   4.3e-09   3.1e-07     463     529 ..     885     945 ..     860     946 .. 0.81

  Alignments for each domain:
  == domain 1    score: -2.4 bits;  conditional E-value: 4
   TIGR02868  96 LaraalallarlrrGdlLarlvaDvdalqdllvRvivPlvvAlv 139
                 La a  ++ + l r +lL+ l++D  a  +l +  ivP++++l+
  MMETSP1137-20121227|7546_1 127 LAEADGKWQSNLLRAELLSLLAKDFPAQMNLRLNDIVPVLSSLM 170
                 566677888899999***********************999875 PP

  == domain 2    score: 7.5 bits;  conditional E-value: 0.0041
   TIGR02868 324 aaeaaasekptlelrdlsvsypgaeevlkgvsldlepGervavvGasGaGKstLlalla 382
                 + +++a+++ +l+    s +y ++   l++ +l+l+ G r  + G+  +GK+ L+ ++a
  MMETSP1137-20121227|7546_1 399 EVKEEADDAEQLCDCTFSLAYGNK-VLLNQTQLKLKRGYRYGLCGKNDSGKTSLMRAIA 456
                 223333344466666666666554.579**************************99876 PP

  == domain 3    score: 43.5 bits;  conditional E-value: 5.1e-14
   TIGR02868 463 tklgeggarlSGGerqRlalARaLladapvllLDEPtehLDaeteeelledLlaaeegrtvvlvthr 529
                 ++l+++  rlSGG r +lal Ra+l  a++llLDEPt hLD++  + +++ L + +++ t ++v+h+
  MMETSP1137-20121227|7546_1 526 ASLTKQVGRLSGGWRMKLALVRAMLMRADILLLDEPTNHLDPGNVKWVIDYLTS-LKSVTSIIVSHD 591
                 56888889*************************************999988875.556778888886 PP

  == domain 4    score: 31.5 bits;  conditional E-value: 2.2e-10
   TIGR02868 329 asekptlelrdlsvsypgaee.vlkgvsldlepGervavvGasGaGKstLlallaglldplkGev 392
                 +++k  +++ ++++ ypga++  l++v++ ++   r a +Ga GaGKst+++ll+g l+p++G+ 
  MMETSP1137-20121227|7546_1 654 SKGKHIMKMTNITFTYPGAPKpQLTNVTVRVSLSTRAACIGANGAGKSTMIKLLTGELEPDRGSG 718
                 4467778999***********9***************************************9975 PP

  == domain 5    score: 27.2 bits;  conditional E-value: 4.3e-09
   TIGR02868 463 tklgeggarlSGGerqRlalARaLladapvllLDEPtehLDaeteeelledLlaaeegrtvvlvthr 529
                 t++     +lSGG++ +++lA a+ ++  +++LDEPt  LD +   +l e++ a + g  vv+++h+
  MMETSP1137-20121227|7546_1 885 TRM----GALSGGQKVKVVLAAAMWNTPHIVILDEPTNYLDRDSLGALAEAIHAYDGG--VVIISHN 945
                 333....379**********************************99999999887765..7788886 PP

>> TIGR02673  FtsE: cell division ATP-binding protein FtsE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.1   0.0    0.0028       0.2      10      51 ..     418     458 ..     412     463 .. 0.85
   2 !   35.1   0.0   3.1e-11   2.2e-09     135     211 ..     532     606 ..     520     609 .. 0.92
   3 !   26.2   0.0   1.6e-08   1.2e-06       1      61 [.     659     720 ..     659     737 .. 0.89
   4 !   38.0   0.0   4.1e-12   2.9e-10     109     212 ..     859     961 ..     843     963 .. 0.83

  Alignments for each domain:
  == domain 1    score: 9.1 bits;  conditional E-value: 0.0028
   TIGR02673  10 eyaagveaLkdvslkiekgeflfltGasGaGkttllklllga 51 
                 +y ++   L++ +lk+++g  + l G+  +Gkt+l++ + ++
  MMETSP1137-20121227|7546_1 418 AY-GNKVLLNQTQLKLKRGYRYGLCGKNDSGKTSLMRAIANQ 458
                 56.4456799***************************99876 PP

  == domain 2    score: 35.1 bits;  conditional E-value: 3.1e-11
   TIGR02673 135 peelsgGeqqRvaiaRaivnkPelllaDePtGnlDdelserildllkelnkrGttvivathdeelvervkkrvlele 211
                   +lsgG + + a+ Ra++ + ++ll DePt  lD+ + + ++d l++l++  +t i+++hd +++++v ++vl+++
  MMETSP1137-20121227|7546_1 532 VGRLSGGWRMKLALVRAMLMRADILLLDEPTNHLDPGNVKWVIDYLTSLKS--VTSIIVSHDIKVLDQVCTHVLQID 606
                 568*******************************************99875..799999**********99999876 PP

  == domain 3    score: 26.2 bits;  conditional E-value: 1.6e-08
   TIGR02673   1 iielekvskeya.agveaLkdvslkiekgeflfltGasGaGkttllklllgaekpsrGevev 61 
                 i+++++++++y+ a    L++v+++++ +  +  +Ga GaGk+t++kll+g ++p+rG+ ev
  MMETSP1137-20121227|7546_1 659 IMKMTNITFTYPgAPKPQLTNVTVRVSLSTRAACIGANGAGKSTMIKLLTGELEPDRGSGEV 720
                 57899******9445679***************************************98766 PP

  == domain 4    score: 38.0 bits;  conditional E-value: 4.1e-12
   TIGR02673 109 kkeeeiqkrveevlelvgledkakal..peelsgGeqqRvaiaRaivnkPelllaDePtGnlDdelserildllkelnkrGttvivathdeelvervkkrvlelek 212
                  ++  +qk ve+ l+ vgl+    +     +lsgG + +v +a a+ n+P++++ DePt  lD +    + +l ++++++   v++ +h+ ++v++v   v +le+
  MMETSP1137-20121227|7546_1 859 LQRPLTQKFVEAHLNDVGLAPEFATHtrMGALSGGQKVKVVLAAAMWNTPHIVILDEPTNYLDRDS---LGALAEAIHAYDGGVVIISHNAQFVDQVCPEVWHLEN 961
                 455677899**********998655411568********************************975...5567788899999999***********9988888875 PP

>> TIGR03522  GldA_ABC_ATP: gliding motility-associated ABC transporter ATP-binding subunit GldA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.2   0.1   8.3e-13     6e-11      10     210 ..     417     610 ..     412     635 .. 0.81
   2 !   22.5   0.0     2e-07   1.5e-05      19      84 ..     678     743 ..     660     783 .. 0.76
   3 !   44.1   0.0   5.3e-14   3.8e-12     108     271 ..     862    1025 ..     850    1041 .. 0.77

  Alignments for each domain:
  == domain 1    score: 40.2 bits;  conditional E-value: 8.3e-13
   TIGR03522  10 klygkqkaldevsfeaekGeivGflGPnGaGkstlmkiltgylkadsGsvavagedvlknslevrkniGylPehnPlyldlyvr.eylefsaalyklkgrklkkrveelielvGlkaeq.hkkigalskGyrqrvGlakallhdPkvlildePttGldPnqlveirevikeiakdktvilsthimqevealcdrviiinkGki 210
                   yg++  l++  ++ ++G   G+ G n +Gk++lm+ ++       G    ++   +   ++v+  +  +P    + +d+ v+ e l+  +  y++  r++   v    +  G+ + +  k++g+ls G+r +  l +a+l   ++l+ldePt  ldP ++  + + + ++    ++i+s h ++ ++ +c +v+ i+  k+
  MMETSP1137-20121227|7546_1 417 LAYGNKVLLNQTQLKLKRGYRYGLCGKNDSGKTSLMRAIANQ--QVEGFPPATELRTMFVETDVQGELSEMP----V-IDFVVKhEGLKAYGITYEMA-REKLLSVGFAEDDSGMAPASlTKQVGRLSGGWRMKLALVRAMLMRADILLLDEPTNHLDPGNVKWVIDYLTSLKSVTSIIVS-HDIKVLDQVCTHVLQIDGLKL 610
                 579**********************************98864..4456566666666666777776666555....3.4555543899999******9.6666778888999***99873688*************************************988888888777666556655.777899*******99986555 PP

  == domain 2    score: 22.5 bits;  conditional E-value: 2e-07
   TIGR03522  19 devsfeaekGeivGflGPnGaGkstlmkiltgylkadsGsvavagedvlknslevrkniGylPehn 84 
                  +v+ ++        +G nGaGkst++k+ltg l++d Gs +v  +   + +  +++   ++ +h 
  MMETSP1137-20121227|7546_1 678 TNVTVRVSLSTRAACIGANGAGKSTMIKLLTGELEPDRGSGEVWRHPNCRVAYVAQHAFHHIENHL 743
                 5566666666667789**************************999888877777777776666665 PP

  == domain 3    score: 44.1 bits;  conditional E-value: 5.3e-14
   TIGR03522  108 rklkkrveelielvGlkae..qhkkigalskGyrqrvGlakallhdPkvlildePttGldPnqlveirevikeiakdktvilsthimqevealcdrviiinkGkivadkkleelkaaekkkviev.efeeeidlqllekleevsevkklkgntykltveteedvrke 271 
                   + +k ve+ ++ vGl +e  +h ++gals G + +v la+a+   P+++ildePt  ld + l ++ e i+  a d  v++ +h  q v+ +c +v  +++  + ++ + + l++a+k+ v +  e ee +d  l ++++  ++ kk +++++k + +  ++ rk+
  MMETSP1137-20121227|7546_1  862 PLTQKFVEAHLNDVGLAPEfaTHTRMGALSGGQKVKVVLAAAMWNTPHIVILDEPTNYLDRDSLGALAEAIH--AYDGGVVIISHNAQFVDQVCPEVWHLENHTLNLKGSYDWLESANKEAVKQAkEAEEYVD-GLGNTVKIAKKKKKASKAELKKIKKGIAEKRKA 1025
                  456778999********996679**********************************************998..6789999999****************************999999866655414444444.333333333333444444444444444555555 PP

>> TIGR03873  F420-0_ABC_ATP: proposed F420-0 ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   0.0     0.015       1.1       7      48 ..     415     456 ..     409     469 .. 0.90
   2 !   43.3   0.0   7.6e-14   5.5e-12     132     215 ..     529     610 ..     520     639 .. 0.90
   3 !   21.8   0.0   2.8e-07     2e-05      17      57 ..     677     717 ..     664     735 .. 0.90
   4 !   32.9   0.0   1.2e-10   8.4e-09     116     211 ..     866     960 ..     855     971 .. 0.77

  Alignments for each domain:
  == domain 1    score: 6.3 bits;  conditional E-value: 0.015
   TIGR03873   7 vsvraggrlivddvdvtaPaGaltgllGPnGsGkstllrlla 48 
                  s+  g+++++++ +++   G   gl G n sGk+ l+r +a
  MMETSP1137-20121227|7546_1 415 FSLAYGNKVLLNQTQLKLKRGYRYGLCGKNDSGKTSLMRAIA 456
                 5778899999*****************************987 PP

  == domain 2    score: 43.3 bits;  conditional E-value: 7.6e-14
   TIGR03873 132 drdlstlsGGerqrvhlaralaqePklllldePtnhldvsaqlellalvrelaaegvtvvvalhdlnlaasvcdhvvvldgGrv 215
                 ++++  lsGG r +  l ra+  +  +llldePtnhld      ++  + +l  + vt ++  hd++   +vc hv+ +dg ++
  MMETSP1137-20121227|7546_1 529 TKQVGRLSGGWRMKLALVRAMLMRADILLLDEPTNHLDPGNVKWVIDYLTSL--KSVTSIIVSHDIKVLDQVCTHVLQIDGLKL 610
                 567889*********************************99999********..99*********************9988665 PP

  == domain 3    score: 21.8 bits;  conditional E-value: 2.8e-07
   TIGR03873  17 vddvdvtaPaGaltgllGPnGsGkstllrllaGllapdaGe 57 
                 +++v+v +   + ++ +G nG+Gkst+++ll+G l+pd+G+
  MMETSP1137-20121227|7546_1 677 LTNVTVRVSLSTRAACIGANGAGKSTMIKLLTGELEPDRGS 717
                 68899999999999************************996 PP

  == domain 4    score: 32.9 bits;  conditional E-value: 1.2e-10
   TIGR03873 116 evvdralarvels.sladrd.lstlsGGerqrvhlaralaqePklllldePtnhldvsaqlellalvrelaaegvtvvvalhdlnlaasvcdhvvvld 211
                 + v++ l +v+l+ ++a+ + + +lsGG++ +v la a+   P++++ldePtn+ld  +  +l ++++        vv+  h+ ++  +vc +v  l+
  MMETSP1137-20121227|7546_1 866 KFVEAHLNDVGLApEFATHTrMGALSGGQKVKVVLAAAMWNTPHIVILDEPTNYLDRDSLGALAEAIHAY---DGGVVIISHNAQFVDQVCPEVWHLE 960
                 566777778876547887653899********************************66544444455554...5556667788888888888876665 PP

>> TIGR00972  3a0107s01c2: phosphate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.3   0.0   0.00048     0.034       7      49 ..     415     457 ..     411     485 .. 0.85
   2 !   45.6   0.0   1.6e-14   1.2e-12     102     214 ..     488     603 ..     472     625 .. 0.81
   3 !   10.2   0.0     0.001     0.074       2      47 ..     660     707 ..     659     720 .. 0.85
   4 !   37.5   0.0   4.6e-12   3.3e-10     116     227 ..     863     970 ..     848     994 .. 0.82

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 0.00048
   TIGR00972   7 lklfygekealkdvnleikknkvtaliGpsGcGkstllrslnr 49 
                 ++l yg+k  l++ +l++k+    +l G+  +Gk++l+r++  
  MMETSP1137-20121227|7546_1 415 FSLAYGNKVLLNQTQLKLKRGYRYGLCGKNDSGKTSLMRAIAN 457
                 7899***********************************9953 PP

  == domain 2    score: 45.6 bits;  conditional E-value: 1.6e-14
   TIGR00972 102 vayglrlkgikdkkeldeiveesLkkaalwde....vkdklkksalsLsGGqqqrlciaralavePevlLlDePtsaLDpiatekieeliqeLkkkytivivthnmqqaarvsdkta 214
                 + + ++ +g+k      e+++e+L ++++ ++        l k+  +LsGG + +l++ ra+ ++ ++lLlDePt  LDp  ++ + + +++Lk ++t +iv h+++   +v  ++ 
  MMETSP1137-20121227|7546_1 488 IDFVVKHEGLKAYGITYEMAREKLLSVGFAEDdsgmAPASLTKQVGRLSGGWRMKLALVRAMLMRADILLLDEPTNHLDPGNVKWVIDYLTSLK-SVTSIIVSHDIKVLDQVCTHVL 603
                 6677788888888888888888888888877622223357899999***********************************************8.58999******99888877665 PP

  == domain 3    score: 10.2 bits;  conditional E-value: 0.001
   TIGR00972   2 levknlklfy..gekealkdvnleikknkvtaliGpsGcGkstllrsl 47 
                 ++++n++++y  + k  l++v++ ++  + +a iG  G+Gkst+++ l
  MMETSP1137-20121227|7546_1 660 MKMTNITFTYpgAPKPQLTNVTVRVSLSTRAACIGANGAGKSTMIKLL 707
                 77888888883234669****************************977 PP

  == domain 4    score: 37.5 bits;  conditional E-value: 4.6e-12
   TIGR00972 116 eldeiveesLkkaalwdevkdklkksalsLsGGqqqrlciaralavePevlLlDePtsaLDpiatekieeliqeLkkkytivivthnmqqaarvsdktaffleGelveeget 227
                   ++ ve+ L++++l  e  +  ++   +LsGGq+ ++++a a+   P++++lDePt  LD  +   + e i+    +  +vi+ hn q+  +v  ++  + + +l  +g+ 
  MMETSP1137-20121227|7546_1 863 LTQKFVEAHLNDVGLAPEFAT--HTRMGALSGGQKVKVVLAAAMWNTPHIVILDEPTNYLDRDSLGALAEAIHAY--DGGVVIISHNAQFVDQVCPEVWHLENHTLNLKGSY 970
                 567889999999999999865..667778*******************************************976..5679*************999988877766655554 PP

>> TIGR01842  type_I_sec_PrtD: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.5   0.0   0.00094     0.067     319     365 ..     410     456 ..     347     462 .. 0.72
   2 !   27.4   0.0   3.5e-09   2.5e-07     450     523 ..     530     601 ..     524     622 .. 0.84
   3 !   22.2   0.0   1.3e-07   9.6e-06     315     374 ..     658     717 ..     633     721 .. 0.92
   4 !   40.3   0.0   4.3e-13   3.1e-11     454     520 ..     889     952 ..     881     975 .. 0.85

  Alignments for each domain:
  == domain 1    score: 9.5 bits;  conditional E-value: 0.00094
   TIGR01842 319 venvslvppeekkktlkgisfalkaGealaiiGpsgsGkssLarllv 365
                 + + ++  + ++k  l++ +++lk G   ++ G   sGk+sL+r + 
  MMETSP1137-20121227|7546_1 410 LCDCTFSLAYGNKVLLNQTQLKLKRGYRYGLCGKNDSGKTSLMRAIA 456
                 3445667778889*******************************986 PP

  == domain 2    score: 27.4 bits;  conditional E-value: 3.5e-09
   TIGR01842 450 egGaaLsgGqrqRiaLaRalygdPklvvLDePnanLDeeGeqalakalkelkarkitvvvithrpsllelvdki 523
                 ++   LsgG r ++aL Ra+     +++LDeP   LD    + +++ l++lk   +t ++++h +++l++v   
  MMETSP1137-20121227|7546_1 530 KQVGRLSGGWRMKLALVRAMLMRADILLLDEPTNHLDPGNVKWVIDYLTSLK--SVTSIIVSHDIKVLDQVCTH 601
                 56678********************************999999999999997..5899**********988543 PP

  == domain 3    score: 22.2 bits;  conditional E-value: 1.3e-07
   TIGR01842 315 gelevenvslvppeekkktlkgisfalkaGealaiiGpsgsGkssLarllvGvwlpasGs 374
                   +++ n++++ p++ k+ l++++++++     a iG+ g+Gks++ +ll+G  +p +Gs
  MMETSP1137-20121227|7546_1 658 HIMKMTNITFTYPGAPKPQLTNVTVRVSLSTRAACIGANGAGKSTMIKLLTGELEPDRGS 717
                 557899************************************************999986 PP

  == domain 4    score: 40.3 bits;  conditional E-value: 4.3e-13
   TIGR01842 454 aLsgGqrqRiaLaRalygdPklvvLDePnanLDeeGeqalakalkelkarkitvvvithrpsllelv 520
                 aLsgGq+ ++ La a++ +P++v+LDeP   LD +   ala+a+++       vv+i+h ++ +++v
  MMETSP1137-20121227|7546_1 889 ALSGGQKVKVVLAAAMWNTPHIVILDEPTNYLDRDSLGALAEAIHA---YDGGVVIISHNAQFVDQV 952
                 7******************************************875...678999*****9988766 PP

>> TIGR03608  L_ocin_972_ABC: putative bacteriocin export ABC transporter, lactococcin 972 group
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.0   5.1e-05    0.0037       7      46 ..     418     457 ..     414     463 .. 0.91
   2 !   46.2   0.0   1.1e-14   7.8e-13     126     203 ..     526     602 ..     508     605 .. 0.88
   3 !    9.1   0.0    0.0025      0.18      14      54 ..     677     717 ..     662     739 .. 0.80
   4 !   29.0   0.0     2e-09   1.4e-07     107     199 ..     860     951 ..     848     959 .. 0.79

  Alignments for each domain:
  == domain 1    score: 14.6 bits;  conditional E-value: 5.1e-05
   TIGR03608   7 kfkdkeilkklslkiekGelvaivGesGsGKstlLnilgl 46 
                  +++k++l++++lk+++G  + ++G+  sGK+ l+  +++
  MMETSP1137-20121227|7546_1 418 AYGNKVLLNQTQLKLKRGYRYGLCGKNDSGKTSLMRAIAN 457
                 6899*******************************99986 PP

  == domain 2    score: 46.2 bits;  conditional E-value: 1.1e-14
   TIGR03608 126 kklkkkiyelsgGekqRvalarillkeselilADEPtgsLDkknreevlellkelkeegktiiivtHdpevaek.adrv 203
                 ++l k++  lsgG + ++al+r++l  ++++l DEPt  LD+ n + v+++l++lk+   t iiv Hd +v ++ + +v
  MMETSP1137-20121227|7546_1 526 ASLTKQVGRLSGGWRMKLALVRAMLMRADILLLDEPTNHLDPGNVKWVIDYLTSLKSV--TSIIVSHDIKVLDQvCTHV 602
                 578899*************************************************875..66889***99987624555 PP

  == domain 3    score: 9.1 bits;  conditional E-value: 0.0025
   TIGR03608  14 lkklslkiekGelvaivGesGsGKstlLnilgllekkdsgk 54 
                 l+++ ++++     a +G  G+GKst++ +l+   ++d+g+
  MMETSP1137-20121227|7546_1 677 LTNVTVRVSLSTRAACIGANGAGKSTMIKLLTGELEPDRGS 717
                 67888888889999***************997655556554 PP

  == domain 4    score: 29.0 bits;  conditional E-value: 2e-09
   TIGR03608 107 skkekekkkkevlekvgl..ekklkkkiyelsgGekqRvalarillkeselilADEPtgsLDkknreevlellkelkeegktiiivtHdpevaek 199
                 ++  ++k ++ +l++vgl  e  +++++  lsgG+k +v la ++   +++++ DEPt  LD+++  ++ e ++     +  ++i+ H+++  ++
  MMETSP1137-20121227|7546_1 860 QRPLTQKFVEAHLNDVGLapEFATHTRMGALSGGQKVKVVLAAAMWNTPHIVILDEPTNYLDRDSLGALAEAIHAY---DGGVVIISHNAQFVDQ 951
                 555567788899******7777889999**********************************99988877776554...4456667787765544 PP

>> TIGR01166  cbiO: cobalt ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.1   0.0   0.00059     0.042       5      39 ..     423     456 ..     419     460 .. 0.87
   2 !   33.4   0.0   8.4e-11   6.1e-09     123     188 ..     530     593 ..     522     595 .. 0.89
   3 !   26.6   0.0   1.1e-08   7.6e-07       7      48 ..     676     717 ..     669     725 .. 0.90
   4 !   28.2   0.0   3.5e-09   2.5e-07     108     186 ..     868     945 ..     850     949 .. 0.78

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 0.00059
   TIGR01166   5 aevlkglnlavergevlallGanGaGkstlllhln 39 
                 +  l++ +l+++rg + +l G+n +Gk+ l++ ++
  MMETSP1137-20121227|7546_1 423 V-LLNQTQLKLKRGYRYGLCGKNDSGKTSLMRAIA 456
                 4.68999************************9875 PP

  == domain 2    score: 33.4 bits;  conditional E-value: 8.4e-11
   TIGR01166 123 rpthllsgGekkrvaiagavalrpdvllldePtagldpaGaeqlleilrklreeGktvvisthdvd 188
                 + +  lsgG + ++a+  a+ +r+d+llldePt  ldp  ++ +++ l  l+    t +i +hd++
  MMETSP1137-20121227|7546_1 530 KQVGRLSGGWRMKLALVRAMLMRADILLLDEPTNHLDPGNVKWVIDYLTSLKSV--TSIIVSHDIK 593
                 56678**********************************************864..5667789997 PP

  == domain 3    score: 26.6 bits;  conditional E-value: 1.1e-08
   TIGR01166   7 vlkglnlavergevlallGanGaGkstlllhlnGllrPksGk 48 
                  l+++ ++v+ +++ a +GanGaGkst+++ l+G l P  G 
  MMETSP1137-20121227|7546_1 676 QLTNVTVRVSLSTRAACIGANGAGKSTMIKLLTGELEPDRGS 717
                 58999*********************************9885 PP

  == domain 4    score: 28.2 bits;  conditional E-value: 3.5e-09
   TIGR01166 108 vrealaavdis.gle.erpthllsgGekkrvaiagavalrpdvllldePtagldpaGaeqlleilrklreeGktvvisthd 186
                 v+  l+ v++  +++ +  +  lsgG+k +v +a+a+   p++++ldePt  ld +    l+e+++    +G  vvi +h+
  MMETSP1137-20121227|7546_1 868 VEAHLNDVGLApEFAtHTRMGALSGGQKVKVVLAAAMWNTPHIVILDEPTNYLDRDSLGALAEAIHAY--DGG-VVIISHN 945
                 6666777776424441456779***********************************99999999864..343.4445565 PP

>> TIGR00960  3a0501s02: type II secretory pathway family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0       8.4     6e+02      66     133 ..       5      76 ..       2      80 .. 0.60
   2 ?    3.8   0.0      0.12       8.7      15      52 ..     421     458 ..     412     469 .. 0.86
   3 !   31.2   0.0   5.2e-10   3.7e-08     138     212 ..     534     606 ..     505     610 .. 0.91
   4 !   29.7   0.0   1.4e-09     1e-07       2      61 ..     660     719 ..     659     733 .. 0.91
   5 !   31.5   0.0   4.2e-10     3e-08     116     213 ..     865     961 ..     847     964 .. 0.85

  Alignments for each domain:
  == domain 1    score: -2.2 bits;  conditional E-value: 8.4
   TIGR00960  66 dltklrdrevpflrrqiGivfqdfkllsdrtvydn...valalriiGvkgreieerv..saalekvGlkdkak 133
                 dl+ l+  ++p  r q G  f +       t+ ++   vala +i+ +   ++++r+   aal+++ lk+ a 
  MMETSP1137-20121227|7546_1   5 DLSPLSAANTPEEREQAGKTFANGVK-DGATAKKDglfVALAAEIADKGKTKANNRAgaLAALRHIILKNAAS 76 
                 56666666666666666666654322.2222222112289999999888888888762257899998888776 PP

  == domain 2    score: 3.8 bits;  conditional E-value: 0.12
   TIGR00960  15 aelaldnvtvkiekGelvflvGhsGaGkstllklilgi 52 
                 +++ l++ ++k+++G    l G+  +Gk++l++ i + 
  MMETSP1137-20121227|7546_1 421 NKVLLNQTQLKLKRGYRYGLCGKNDSGKTSLMRAIANQ 458
                 556799999*******999**************99865 PP

  == domain 3    score: 31.2 bits;  conditional E-value: 5.2e-10
   TIGR00960 138 qlsgGeqqrvaiaravvnkPallladePtgnlddelsrdilelleevnraGttvlvathdenlveskrkrvltls 212
                 +lsgG + ++a+ ra++ +  +ll dePt  ld+   + +++ l +++   +t ++ +hd++++++   +vl+++
  MMETSP1137-20121227|7546_1 534 RLSGGWRMKLALVRAMLMRADILLLDEPTNHLDPGNVKWVIDYLTSLK--SVTSIIVSHDIKVLDQVCTHVLQID 606
                 79******************************************9986..579999***********99999875 PP

  == domain 4    score: 29.7 bits;  conditional E-value: 1.4e-09
   TIGR00960   2 ikfeqvskaykgaaelaldnvtvkiekGelvflvGhsGaGkstllklilgiekpsaGkir 61 
                 +k+ +++ +y+ga ++ l nvtv+++    +  +G  GaGkst++kl++g  +p +G   
  MMETSP1137-20121227|7546_1 660 MKMTNITFTYPGAPKPQLTNVTVRVSLSTRAACIGANGAGKSTMIKLLTGELEPDRGSGE 719
                 68999*************************************************998544 PP

  == domain 5    score: 31.5 bits;  conditional E-value: 4.2e-10
   TIGR00960 116 eervsaalekvGlkdk..akalPvqlsgGeqqrvaiaravvnkPallladePtgnlddelsrdilelleevnraGttvlvathdenlveskrkrvltlsk 213
                 ++ v+a l+ vGl      ++    lsgG++ +v +a a+ n P++++ dePt  ld++  ++   l e ++     v++ +h+ ++v++    v +l++
  MMETSP1137-20121227|7546_1 865 QKFVEAHLNDVGLAPEfaTHTRMGALSGGQKVKVVLAAAMWNTPHIVILDEPTNYLDRDS-LG--ALAEAIHAYDGGVVIISHNAQFVDQVCPEVWHLEN 961
                 5678999******865225666779********************************984.44..567999999999************99888877775 PP

>> TIGR03410  urea_trans_UrtE: urea ABC transporter, ATP-binding protein UrtE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0     2e-05    0.0014       7      49 ..     416     458 ..     412     471 .. 0.92
   2 !   34.3   0.0   4.7e-11   3.4e-09     126     205 ..     529     605 ..     523     623 .. 0.82
   3 !   17.3   0.0   7.6e-06   0.00055       4      56 ..     663     717 ..     660     728 .. 0.82
   4 !   28.6   0.0   2.6e-09   1.9e-07     125     219 ..     883     973 ..     853     984 .. 0.84

  Alignments for each domain:
  == domain 1    score: 15.9 bits;  conditional E-value: 2e-05
   TIGR03410   7 evaYgesevlrdvslevekgevvavlGrngvGkttllkalvgl 49 
                 ++aYg+  +l++ +l++++g    + G+n  Gkt+l++a+  +
  MMETSP1137-20121227|7546_1 416 SLAYGNKVLLNQTQLKLKRGYRYGLCGKNDSGKTSLMRAIANQ 458
                 679************************************9765 PP

  == domain 2    score: 34.3 bits;  conditional E-value: 4.7e-11
   TIGR03410 126 kRrgGdLsGGqqqqlaiaRaLvtePklllLDePteGiqPsiikeiekvikelakekdlaillveqvldfaleladrylvl 205
                 +++ G LsGG + +la+ Ra++++  +llLDePt+ + P  +k    vi+ l++ k ++ ++v + ++   ++  ++l +
  MMETSP1137-20121227|7546_1 529 TKQVGRLSGGWRMKLALVRAMLMRADILLLDEPTNHLDPGNVKW---VIDYLTSLKSVTSIIVSHDIKVLDQVCTHVLQI 605
                 6789***********************************97665...666666667778788888888777777776655 PP

  == domain 3    score: 17.3 bits;  conditional E-value: 7.6e-06
   TIGR03410   4 enlevaYges..evlrdvslevekgevvavlGrngvGkttllkalvgllkvksGe 56 
                 +n++ +Y  +    l++v+++v+ +  +a +G ng+Gk+t++k l+g l+  +G+
  MMETSP1137-20121227|7546_1 663 TNITFTYPGApkPQLTNVTVRVSLSTRAACIGANGAGKSTMIKLLTGELEPDRGS 717
                 56666665441136999********************************999987 PP

  == domain 4    score: 28.6 bits;  conditional E-value: 2.6e-09
   TIGR03410 125 lkRrgGdLsGGqqqqlaiaRaLvtePklllLDePteGiqPsiikeiekvikelakekdlaillveqvldfaleladrylvlerGevvaegekeel 219
                 ++ r G LsGGq+ ++ +a a+  +P++++LDePt+ +    +  ++++i++     d +++++ ++ +f+ ++  +++ le+ ++  +g+ + l
  MMETSP1137-20121227|7546_1 883 THTRMGALSGGQKVKVVLAAAMWNTPHIVILDEPTNYLDRDSLGALAEAIHA----YDGGVVIISHNAQFVDQVCPEVWHLENHTLNLKGSYDWL 973
                 46789*********************************99888888888765....45689999999******9999999999988888876544 PP

>> TIGR03740  galliderm_ABC: lantibiotic protection ABC transporter, ATP-binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.1   0.3   2.3e-13   1.7e-11       8     203 ..     417     611 ..     412     622 .. 0.80
   2 !   23.9   0.0   8.7e-08   6.3e-06      16      59 ..     677     720 ..     661     785 .. 0.86
   3 !   28.9   0.0   2.6e-09   1.8e-07      99     209 ..     862     971 ..     842     984 .. 0.81

  Alignments for each domain:
  == domain 1    score: 42.1 bits;  conditional E-value: 2.3e-13
   TIGR03740   8 kkfkkqavvnnvslkvkknsvygllGpnGaGkstllklltGllrktsGeilldgrewtrkdlkkiGsliesPalyenltarenlkvrtlllglpesrieevlkivd...le.ntekkkakqfslGmkqrlGiaiallnkPkllildePtnGldPlGiqelreliksfpekGitvilsshilsevelladhiGiiseGklk 203
                  +++++ ++n+ +lk+k+   ygl G n +Gk++l++ ++   ++ +G     + +    +    G l e P + + +  +e lk   ++ ++ ++++ +v    d   +      k+++ +s G + +l +  a+l + ++l+ldePtn ldP  ++ + + ++s++   +t i+ sh +  +++++ h+  i   klk
  MMETSP1137-20121227|7546_1 417 LAYGNKVLLNQTQLKLKRGYRYGLCGKNDSGKTSLMRAIAN--QQVEGFPPATELRTMFVETDVQGELSEMP-VIDFVVKHEGLKAYGITYEMAREKLLSVGFAEDdsgMApASLTKQVGRLSGGWRMKLALVRAMLMRADILLLDEPTNHLDPGNVKWVIDYLTSLK--SVTSIIVSHDIKVLDQVCTHVLQIDGLKLK 611
                 5799*********************************9986..55555443333333333334447777776.5689999*********99999999999965544111321456899*************************************9999999999986..588899999999999999999888776664 PP

  == domain 2    score: 23.9 bits;  conditional E-value: 8.7e-08
   TIGR03740  16 vnnvslkvkknsvygllGpnGaGkstllklltGllrktsGeill 59 
                 + nv+++v  ++  + +G nGaGkst++klltG l+++ G+  +
  MMETSP1137-20121227|7546_1 677 LTNVTVRVSLSTRAACIGANGAGKSTMIKLLTGELEPDRGSGEV 720
                 78999999999999***********************9887555 PP

  == domain 3    score: 28.9 bits;  conditional E-value: 2.6e-09
   TIGR03740  99 glpesrieevlkivdlent..ekkkakqfslGmkqrlGiaiallnkPkllildePtnGldPlGiqelreliksfpekGitvilsshilsevelladhiGiiseGklkyekkid 209
                  l ++ +e  l+ v+l  +  +  + + +s G k ++ +a a+ n+P+++ildePtn ld   +  l e i+++   G  v++ sh    v++++ ++  +++ +l++++++d
  MMETSP1137-20121227|7546_1 862 PLTQKFVEAHLNDVGLAPEfaTHTRMGALSGGQKVKVVLAAAMWNTPHIVILDEPTNYLDRDSLGALAEAIHAYD--G-GVVIISHNAQFVDQVCPEVWHLENHTLNLKGSYD 971
                 466677888899999975411567889999*******************************99999999999985..4.3555589999999999999999999998888776 PP

>> TIGR02315  ABC_phnC: phosphonate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.7   0.0    0.0016      0.12      10      50 ..     418     457 ..     413     481 .. 0.87
   2 !   38.7   0.0   2.2e-12   1.6e-10     140     219 ..     529     605 ..     509     622 .. 0.89
   3 !   16.8   0.0     1e-05   0.00074       1      58 [.     659     717 ..     659     742 .. 0.87
   4 !   28.9   0.0   2.1e-09   1.5e-07     128     221 ..     870     961 ..     842     981 .. 0.75

  Alignments for each domain:
  == domain 1    score: 9.7 bits;  conditional E-value: 0.0016
   TIGR02315  10 vypngkqalknvnleikkGelvaviGlsGaGkstllrsinr 50 
                  y+ +k  l++++l++k+G   ++ G+  +Gk+ l+r+i +
  MMETSP1137-20121227|7546_1 418 AYG-NKVLLNQTQLKLKRGYRYGLCGKNDSGKTSLMRAIAN 457
                 677.8999*****************************9964 PP

  == domain 2    score: 38.7 bits;  conditional E-value: 2.2e-12
   TIGR02315 140 akradqLsGGqqqRvaiaRalaqqpklilaDEPiasLDpksskqvmdllkrinkekgitvivnlHqvdlakkyadrivgl 219
                 +k++ +LsGG + ++a+ Ra++ +++++l DEP+  LDp + k v+d+l ++     +t i+  H++++  + +++++ +
  MMETSP1137-20121227|7546_1 529 TKQVGRLSGGWRMKLALVRAMLMRADILLLDEPTNHLDPGNVKWVIDYLTSLK---SVTSIIVSHDIKVLDQVCTHVLQI 605
                 578899******************************************99885...677788889999999999998866 PP

  == domain 3    score: 16.8 bits;  conditional E-value: 1e-05
   TIGR02315   1 llevenlskvypng.kqalknvnleikkGelvaviGlsGaGkstllrsinrlveissgs 58 
                 +++++n++ +yp++ k  l nv + ++     a iG  GaGkst+++ + +  e+++gs
  MMETSP1137-20121227|7546_1 659 IMKMTNITFTYPGApKPQLTNVTVRVSLSTRAACIGANGAGKSTMIKLLTGELEPDRGS 717
                 578999999**9763669******************************99887777765 PP

  == domain 4    score: 28.9 bits;  conditional E-value: 2.1e-09
   TIGR02315 128 elLervglael..aakradqLsGGqqqRvaiaRalaqqpklilaDEPiasLDpksskqvmdllkrinkekgitvivnlHqvdlakkyadrivglka 221
                 + L+ vgla     ++r+ +LsGGq+ +v +a a+ + p++++ DEP+  LD  s   + ++   i   +g  vi++ H+ +++ + +  +  l++
  MMETSP1137-20121227|7546_1 870 AHLNDVGLAPEfaTHTRMGALSGGQKVKVVLAAAMWNTPHIVILDEPTNYLDRDSLGALAEA---IHAYDGGVVIIS-HNAQFVDQVCPEVWHLEN 961
                 46888898754115789***********************************9886655443...344444444443.777777666666666655 PP

>> TIGR03864  PQQ_ABC_ATP: ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.6   0.0   0.00043     0.031       7      48 ..     415     456 ..     410     462 .. 0.91
   2 !   30.9   0.0   5.2e-10   3.8e-08     126     196 ..     528     598 ..     494     621 .. 0.85
   3 !   22.8   0.0   1.5e-07   1.1e-05       3      60 ..     661     720 ..     659     732 .. 0.85
   4 !   28.9   0.0   2.2e-09   1.6e-07     104     178 ..     859     935 ..     851     983 .. 0.85

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 0.00043
   TIGR03864   7 lsfaygkrralddvsltvakgefvaLLGpnGaGkstLfsllt 48 
                  s ayg++  l++ +l++++g    L G n +Gk+ L+  ++
  MMETSP1137-20121227|7546_1 415 FSLAYGNKVLLNQTQLKLKRGYRYGLCGKNDSGKTSLMRAIA 456
                 5789*********************************98765 PP

  == domain 2    score: 30.9 bits;  conditional E-value: 5.2e-10
   TIGR03864 126 aeekvreLnGGhrrrveiarallhePklLLlDeatvGLDiesraalveevrelvreeglsvLWathlvdev 196
                  +++v +L+GG r ++ ++ra+l + ++LLlDe+t  LD+   + +++++ +l   +++ v     ++d v
  MMETSP1137-20121227|7546_1 528 LTKQVGRLSGGWRMKLALVRAMLMRADILLLDEPTNHLDPGNVKWVIDYLTSLKSVTSIIVSHDIKVLDQV 598
                 4678*********************************************9999988888876666666655 PP

  == domain 3    score: 22.8 bits;  conditional E-value: 1.5e-07
   TIGR03864   3 eveglsfay..gkrralddvsltvakgefvaLLGpnGaGkstLfslltrLyeakegeikv 60 
                 ++++++f+y  + +  l +v+++v+ ++ +a +G nGaGkst+++llt+ +e ++g+ +v
  MMETSP1137-20121227|7546_1 661 KMTNITFTYpgAPKPQLTNVTVRVSLSTRAACIGANGAGKSTMIKLLTGELEPDRGSGEV 720
                 5667777775456889*********************************99988886555 PP

  == domain 4    score: 28.9 bits;  conditional E-value: 2.2e-09
   TIGR03864 104 lsraeaeerieealarlglaer..aeekvreLnGGhrrrveiarallhePklLLlDeatvGLDiesraalveevrel 178
                 l r  +++ +e++l+++gla    +++++ +L+GG++ +v +a a+  +P++++lDe+t  LD +s  al e++++ 
  MMETSP1137-20121227|7546_1 859 LQRPLTQKFVEAHLNDVGLAPEfaTHTRMGALSGGQKVKVVLAAAMWNTPHIVILDEPTNYLDRDSLGALAEAIHAY 935
                 5667788889999******976225678899***************************************9999975 PP

>> TIGR02211  LolD_lipo_ex: lipoprotein releasing system, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.0      0.17        12      20      52 ..     424     456 ..     412     462 .. 0.88
   2 !   37.9   0.0   3.8e-12   2.8e-10     135     215 ..     528     606 ..     523     612 .. 0.85
   3 !   14.9   0.0   4.1e-05     0.003      20      61 ..     676     717 ..     659     724 .. 0.80
   4 !   33.6   0.0   8.2e-11   5.9e-09     119     216 ..     865     961 ..     849     965 .. 0.78

  Alignments for each domain:
  == domain 1    score: 3.2 bits;  conditional E-value: 0.17
   TIGR02211  20 vlkgvsleiekgelvaivGssGsGkstllhllg 52 
                 +l++ +l++++g   ++ G+  sGk+ l+  ++
  MMETSP1137-20121227|7546_1 424 LLNQTQLKLKRGYRYGLCGKNDSGKTSLMRAIA 456
                 68999**********************998765 PP

  == domain 2    score: 37.9 bits;  conditional E-value: 3.8e-12
   TIGR02211 135 inkkpselsGGerqrvaiaralvnkPklvladePtgnldkktakkifelllelnkekntallvvthdlelakkl.drvlelk 215
                 ++k+ + lsGG r + a+ ra++ + +++l dePt +ld  + k + + l+ l++   ++ ++v+hd+++ +++  +vl++ 
  MMETSP1137-20121227|7546_1 528 LTKQVGRLSGGWRMKLALVRAMLMRADILLLDEPTNHLDPGNVKWVIDYLTSLKS---VTSIIVSHDIKVLDQVcTHVLQID 606
                 678899******************************************9999976...55689*****98876514556655 PP

  == domain 3    score: 14.9 bits;  conditional E-value: 4.1e-05
   TIGR02211  20 vlkgvsleiekgelvaivGssGsGkstllhllggldkptsGe 61 
                  l++v ++++ +  +a +G+ G+Gkst++ ll+g  +p  G+
  MMETSP1137-20121227|7546_1 676 QLTNVTVRVSLSTRAACIGANGAGKSTMIKLLTGELEPDRGS 717
                 4889999*************************9987777664 PP

  == domain 4    score: 33.6 bits;  conditional E-value: 8.2e-11
   TIGR02211 119 kerakellekvglekr..inkkpselsGGerqrvaiaralvnkPklvladePtgnldkktakkifelllelnkekntallvvthdlelakkl.drvlelkd 216
                 ++  ++ l+ vgl      + + ++lsGG++ +v +a a+ n P++v+ dePt  ld+++  ++ e      ++++ ++++++h+ ++++++ ++v +l++
  MMETSP1137-20121227|7546_1 865 QKFVEAHLNDVGLAPEfaTHTRMGALSGGQKVKVVLAAAMWNTPHIVILDEPTNYLDRDSLGALAEA----IHAYDGGVVIISHNAQFVDQVcPEVWHLEN 961
                 555666788888876511456889**********************************997765555....56788999********99875255666666 PP

>> TIGR03796  NHLM_micro_ABC1: NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.9   0.0    0.0011     0.081     478     526 ..     408     456 ..     383     462 .. 0.86
   2 !   25.9   0.0   7.8e-09   5.6e-07     608     673 ..     527     593 ..     518     612 .. 0.87
   3 !   26.4   0.0   5.8e-09   4.2e-07     475     534 ..     657     716 ..     601     729 .. 0.81
   4 !   20.8   0.0   2.8e-07     2e-05     615     675 ..     889     949 ..     870     980 .. 0.84

  Alignments for each domain:
  == domain 1    score: 8.9 bits;  conditional E-value: 0.0011
   TIGR03796 478 velrnvtfgysaleapliedfslslkpGqrvAlvGgsGsGkstiaklva 526
                  +l + tf+ +  ++ l+++ +l+lk G r  l G   sGk  + + +a
  MMETSP1137-20121227|7546_1 408 EQLCDCTFSLAYGNKVLLNQTQLKLKRGYRYGLCGKNDSGKTSLMRAIA 456
                 578899************************************9999887 PP

  == domain 2    score: 25.9 bits;  conditional E-value: 7.8e-09
   TIGR03796 608 elaegganlsGGqrqRleiARaLvknPsiLilDEatsaLDaetEkaidenlrr.RgctciivaHRLs 673
                 +l+++   lsGG r +l + Ra+  +  iL+lDE t  LD+   k + + l   + +t iiv+H + 
  MMETSP1137-20121227|7546_1 527 SLTKQVGRLSGGWRMKLALVRAMLMRADILLLDEPTNHLDPGNVKWVIDYLTSlKSVTSIIVSHDIK 593
                 566777789*********************************99999999975489********765 PP

  == domain 3    score: 26.4 bits;  conditional E-value: 5.8e-09
   TIGR03796 475 sGkvelrnvtfgysaleapliedfslslkpGqrvAlvGgsGsGkstiaklvaGlyepwsG 534
                 +  ++++n+tf+y    +p + +++++++  +r A +G+ G+Gkst+ kl++G  ep +G
  MMETSP1137-20121227|7546_1 657 KHIMKMTNITFTYPGAPKPQLTNVTVRVSLSTRAACIGANGAGKSTMIKLLTGELEPDRG 716
                 445799***********************************************9999876 PP

  == domain 4    score: 20.8 bits;  conditional E-value: 2.8e-07
   TIGR03796 615 nlsGGqrqRleiARaLvknPsiLilDEatsaLDaetEkaidenlrrRgctciivaHRLsti 675
                  lsGGq+ ++ +A a+ + P i+ilDE t  LD     a+ e+++     ++i++H    +
  MMETSP1137-20121227|7546_1 889 ALSGGQKVKVVLAAAMWNTPHIVILDEPTNYLDRDSLGALAEAIHAYDGGVVIISHNAQFV 949
                 59******************************************************86655 PP

>> TIGR02203  MsbA_lipidA: lipid A export permease/ATP-binding protein MsbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.0     0.067       4.8     336     379 ..     412     455 ..     379     459 .. 0.77
   2 !   32.0   0.0   1.4e-10   9.9e-09     465     533 ..     529     596 ..     507     610 .. 0.87
   3 !   26.9   0.0     5e-09   3.6e-07     332     388 ..     660     716 ..     616     720 .. 0.89
   4 !   18.6   0.0   1.5e-06   0.00011     466     514 ..     885     933 ..     849     951 .. 0.78

  Alignments for each domain:
  == domain 1    score: 3.3 bits;  conditional E-value: 0.067
   TIGR02203 336 nvtfrypgddrealdsislkveaGevvalvGrsGsGkstlvnll 379
                 + tf     ++  l++ +lk++ G +  l G+  sGk++l++ +
  MMETSP1137-20121227|7546_1 412 DCTFSLAYGNKVLLNQTQLKLKRGYRYGLCGKNDSGKTSLMRAI 455
                 5566666666778999***********************99766 PP

  == domain 2    score: 32.0 bits;  conditional E-value: 1.4e-10
   TIGR02203 465 GengskLsGGqRqRlaiaRallkdaPiLiLDeatsaLDneseRlvqaaLerlmkgRttlviahRLstie 533
                  ++ ++LsGG R +la+ Ra+l  a iL+LDe t  LD    + v + L  l    t+++++h +  ++
  MMETSP1137-20121227|7546_1 529 TKQVGRLSGGWRMKLALVRAMLMRADILLLDEPTNHLDPGNVKWVIDYLTSLK-SVTSIIVSHDIKVLD 596
                 456679*******************************************9985.68*******876654 PP

  == domain 3    score: 26.9 bits;  conditional E-value: 5e-09
   TIGR02203 332 vefrnvtfrypgddrealdsislkveaGevvalvGrsGsGkstlvnllpRFyepdsG 388
                 +++ n+tf+ypg+ ++ l ++ ++v+  ++ a +G  G+Gkst+++ll+  +epd+G
  MMETSP1137-20121227|7546_1 660 MKMTNITFTYPGAPKPQLTNVTVRVSLSTRAACIGANGAGKSTMIKLLTGELEPDRG 716
                 7899**********************************************9999998 PP

  == domain 4    score: 18.6 bits;  conditional E-value: 1.5e-06
   TIGR02203 466 engskLsGGqRqRlaiaRallkdaPiLiLDeatsaLDneseRlvqaaLe 514
                 ++ + LsGGq+ ++ +a a+     i+iLDe t  LD +s  ++ +a++
  MMETSP1137-20121227|7546_1 885 TRMGALSGGQKVKVVLAAAMWNTPHIVILDEPTNYLDRDSLGALAEAIH 933
                 45678*****************999**************9887777765 PP

>> TIGR03797  NHLM_micro_ABC2: NHLM bacteriocin system ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.0      0.31        23     457     497 ..     413     453 ..     406     457 .. 0.89
   2 !   28.9   0.0   1.2e-09   8.9e-08     553     645 ..     502     592 ..     488     609 .. 0.88
   3 !   23.2   0.0   6.3e-08   4.5e-06     452     509 ..     660     717 ..     635     720 .. 0.86
   4 !   27.0   0.0   4.5e-09   3.2e-07     587     671 ..     888     973 ..     882     981 .. 0.91

  Alignments for each domain:
  == domain 1    score: 1.1 bits;  conditional E-value: 0.31
   TIGR03797 457 vtFrYekdgplvLddvslkiepGefvaivGaSGsGKStllr 497
                  tF  +   ++ L++  lk + G   ++ G+  sGK +l+r
  MMETSP1137-20121227|7546_1 413 CTFSLAYGNKVLLNQTQLKLKRGYRYGLCGKNDSGKTSLMR 453
                 5777777889999***************************9 PP

  == domain 2    score: 28.9 bits;  conditional E-value: 1.2e-09
   TIGR03797 553 ltldeaweaarmagleeDikam.PmglhTvisegggtlSGGQrQRlliAralvrkPrillfDEATSALDNrtQaiVsesleklk.vtRiviAHRL 645
                 +t + a e +  +g++eD + m P +l    ++  g lSGG r +l + ra+  +  ill+DE T  LD    + V++ l  lk vt i++ H +
  MMETSP1137-20121227|7546_1 502 ITYEMAREKLLSVGFAEDDSGMaPASL----TKQVGRLSGGWRMKLALVRAMLMRADILLLDEPTNHLDPGNVKWVIDYLTSLKsVTSIIVSHDI 592
                 89999999999*****99998845554....566799*********************************************9758******965 PP

  == domain 3    score: 23.2 bits;  conditional E-value: 6.3e-08
   TIGR03797 452 ievdrvtFrYekdgplvLddvslkiepGefvaivGaSGsGKStllrlLLgFekPesGs 509
                 +++ ++tF+Y    +  L +v+++++  +  a +Ga G+GKSt+++lL g  +P+ Gs
  MMETSP1137-20121227|7546_1 660 MKMTNITFTYPGAPKPQLTNVTVRVSLSTRAACIGANGAGKSTMIKLLTGELEPDRGS 717
                 6899******99999***********************************99999886 PP

  == domain 4    score: 27.0 bits;  conditional E-value: 4.5e-09
   TIGR03797 587 gtlSGGQrQRlliAralvrkPrillfDEATSALDNrtQaiVsesleklkvtRiviAHRLSTirn.adrilvleeGrvveqGsyeeL 671
                 g+lSGGQ+ ++++A a+ + P+i+++DE T  LD  +  +  e++++     ++i H    + + +  +  le+  +  +Gsy+ L
  MMETSP1137-20121227|7546_1 888 GALSGGQKVKVVLAAAMWNTPHIVILDEPTNYLDRDSLGALAEAIHAYDGGVVIISHNAQFVDQvCPEVWHLENHTLNLKGSYDWL 973
                 68*******************************************************99999654889999999999999999877 PP

>> TIGR01189  ccmA: heme ABC exporter, ATP-binding protein CcmA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.5   0.3     8e-10   5.7e-08       9     171 ..     418     578 ..     412     602 .. 0.76
   2 !   14.2   0.0   7.7e-05    0.0055      20      63 ..     681     724 ..     673     780 .. 0.75
   3 !   34.6   0.0   4.2e-11     3e-09     105     185 ..     865     945 ..     847     955 .. 0.86

  Alignments for each domain:
  == domain 1    score: 30.5 bits;  conditional E-value: 8e-10
   TIGR01189   9 eRgervlleglsfelaaGealvveGpnGiGKttLLRila.....GLlkpesGevelndkelaeqrdelaeellylgHldglKaeLsalEnLkfyaallqseqktveealekvgLsgle.dlpvaqLsAGqkrRlalarLllskaplWiLDEPttalDkegvellaella 171
                 + g++vll++ +++l+ G    + G+n +GKt+L+R +a     G  ++++ +  + +++++ + +e+   + ++  ++glKa   + E         +++ ++v  a ++ g++ ++    v  Ls G + +lal r +l +a + +LDEPt  lD   v+ + + l+
  MMETSP1137-20121227|7546_1 418 AYGNKVLLNQTQLKLKRGYRYGLCGKNDSGKTSLMRAIAnqqveGFPPATELRTMFVETDVQGELSEM-PVIDFVVKHEGLKAYGITYEMA-------REKLLSVGFAEDDSGMAPASlTKQVGRLSGGWRMKLALVRAMLMRADILLLDEPTNHLDPGNVKWVIDYLT 578
                 568899*******************************9944443555555555556656655554444.6899999999999876555532.......22233455556666665544245799*********************************999887766665 PP

  == domain 2    score: 14.2 bits;  conditional E-value: 7.7e-05
   TIGR01189  20 sfelaaGealvveGpnGiGKttLLRilaGLlkpesGevelndke 63 
                 +++++     +  G nG+GK+t++++l+G l+p+ G+ e+  ++
  MMETSP1137-20121227|7546_1 681 TVRVSLSTRAACIGANGAGKSTMIKLLTGELEPDRGSGEVWRHP 724
                 5555555556678*********************9976665444 PP

  == domain 3    score: 34.6 bits;  conditional E-value: 4.2e-11
   TIGR01189 105 qktveealekvgLsg..ledlpvaqLsAGqkrRlalarLllskaplWiLDEPttalDkegvellaellaaHlargGivllath 185
                 qk ve+ l++vgL+   ++++ + +Ls Gqk ++ la  + ++  + iLDEPt  lD+++   lae++  H+  gG+v+++  
  MMETSP1137-20121227|7546_1 865 QKFVEAHLNDVGLAPefATHTRMGALSGGQKVKVVLAAAMWNTPHIVILDEPTNYLDRDSLGALAEAI--HAYDGGVVIISHN 945
                 45788999*****753368999*******************************************988..7889999888654 PP

>> TIGR03269  met_CoM_red_A2: methyl coenzyme M reductase system, component A2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   0.0     0.018       1.3       9      46 ..     418     455 ..     386     473 .. 0.84
   2 !   31.8   0.0   1.6e-10   1.2e-08     405     498 ..     509     602 ..     487     627 .. 0.84
   3 !   10.5   0.0   0.00047     0.034     277     341 ..     657     718 ..     636     725 .. 0.75
   4 !   31.2   0.0   2.5e-10   1.8e-08     168     287 ..     889    1005 ..     862    1021 .. 0.76

  Alignments for each domain:
  == domain 1    score: 5.3 bits;  conditional E-value: 0.018
   TIGR03269   9 kfdglevlknisleleeGevlGilGksGaGksvllhll 46 
                 ++ ++  l++ +l+l+ G   G+ Gk  +Gk+ l++ +
  MMETSP1137-20121227|7546_1 418 AYGNKVLLNQTQLKLKRGYRYGLCGKNDSGKTSLMRAI 455
                 56778888999999999999999999999999999765 PP

  == domain 2    score: 31.8 bits;  conditional E-value: 1.6e-10
   TIGR03269 405 ivlkavGfdeek...akeildklpdelseGerhrvalaqvlikeprivildeptGtmdpitkvkvaesilkareeleetfvivshdmdfvlevcdra 498
                   l +vGf e++   a   l k   +ls G r ++al + ++    i++ldept  +dp   + v + +   +     t +ivshd+  + +vc  +
  MMETSP1137-20121227|7546_1 509 EKLLSVGFAEDDsgmAPASLTKQVGRLSGGWRMKLALVRAMLMRADILLLDEPTNHLDPGNVKWVIDYLTSLK---SVTSIIVSHDIKVLDQVCTHV 602
                 457899999886333678899999***********************************99888888766554...4589**************876 PP

  == domain 3    score: 10.5 bits;  conditional E-value: 0.00047
   TIGR03269 277 ediikvkdvskryisvdrGvvkavdnvslevkekeifGlvGtsGaGkttlskilaGvleptsGev 341
                 ++i+k+ ++   y    +     + nv++ v  +     +G  GaGk+t+ k+l G lep +G  
  MMETSP1137-20121227|7546_1 657 KHIMKMTNITFTYPGAPKPQ---LTNVTVRVSLSTRAACIGANGAGKSTMIKLLTGELEPDRGSG 718
                 56666666666666655544...34666667667777889*******************998754 PP

  == domain 4    score: 31.2 bits;  conditional E-value: 2.5e-10
   TIGR03269  168 dlsGGekqrvvlarqlakeplllladeptGtldpktaklvhealkeavkeedislvltshwpeviedlsdkaillekGeiveeGepeevvakflesvsevekeke.vevgediikvkdvsk 287 
                   lsGG+k +vvla  + + p +++ dept  ld  +      al ea++++d  +v+ sh ++ +++++ +   le+ ++  +G+ + + +   e+v++ ++++e v+   + +k+ + +k
  MMETSP1137-20121227|7546_1  889 ALSGGQKVKVVLAAAMWNTPHIVILDEPTNYLDRDSL----GALAEAIHAYDGGVVIISHNAQFVDQVCPEVWHLENHTLNLKGSYDWLESANKEAVKQAKEAEEyVDGLGNTVKIAKKKK 1005
                  5888888888888888888888888888888887764....57778888888888888888888888888888888888888888888888888888887775551333345555555554 PP

>> TIGR01288  nodI: nodulation ABC transporter NodI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.9   0.1   3.7e-13   2.7e-11      11     207 ..     416     604 ..     407     617 .. 0.84
   2 !   13.2   0.0   9.9e-05    0.0071      34      76 ..     691     733 ..     664     781 .. 0.85
   3 !   25.3   0.0     2e-08   1.4e-06     128     203 ..     882     954 ..     863     973 .. 0.78

  Alignments for each domain:
  == domain 1    score: 40.9 bits;  conditional E-value: 3.7e-13
   TIGR01288  11 sksygdkvvvndlsftiaagecfgllgpngagkstiarlvlglispdegkitvlgepvpararlarakigvvpqfdnld.reftvr.enllvfgryfglstreieevipsllefarleskadvrvadlsggmkrrltlaralindpqllildepttgldpharhliwerlrsllargktilltthlmeeaerlcdrlcv 207
                 s +yg+kv++n+  + + +g  +gl g n +gk+++ r +            v g p  ++ r   ++  v  ++ ++   +f v+ e l  +g  +++   ++ +v  +  +     +    +v +lsgg + +l+l ra++   ++l+ldept  ldp   + + + l sl +   t ++ +h ++  +++c  +  
  MMETSP1137-20121227|7546_1 416 SLAYGNKVLLNQTQLKLKRGYRYGLCGKNDSGKTSLMRAIANQ--------QVEGFPPATELRTMFVETDVQGELSEMPvIDFVVKhEGLKAYGITYEMAREKLLSVGFAEDDSGMAPASLTKQVGRLSGGWRMKLALVRAMLMRADILLLDEPTNHLDPGNVKWVIDYLTSLKSV--TSIIVSHDIKVLDQVCTHVLQ 604
                 678********************************99987543........4667777778888888888888877775257888637899********9999999888888888888888999************************************************9765..556667888888888876654 PP

  == domain 2    score: 13.2 bits;  conditional E-value: 9.9e-05
   TIGR01288  34 gllgpngagkstiarlvlglispdegkitvlgepvpararlar 76 
                   +g ngagkst+ +l+ g   pd+g   v  +p    a +a+
  MMETSP1137-20121227|7546_1 691 ACIGANGAGKSTMIKLLTGELEPDRGSGEVWRHPNCRVAYVAQ 733
                 5689**********************99998888766666655 PP

  == domain 3    score: 25.3 bits;  conditional E-value: 2e-08
   TIGR01288 128 kadvrvadlsggmkrrltlaralindpqllildepttgldpharhliwerlrsllargktilltthlmeeaerlcd 203
                  +++r+  lsgg k ++ la+a+ n p+++ildept  ld  +   + e +    a    +++ +h  +  +++c 
  MMETSP1137-20121227|7546_1 882 ATHTRMGALSGGQKVKVVLAAAMWNTPHIVILDEPTNYLDRDSLGALAEAIH---AYDGGVVIISHNAQFVDQVCP 954
                 567899**********************************887766666544...344445555565555566665 PP

>> TIGR00958  3a01208: antigen peptide transporter 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.8   0.0   1.8e-08   1.3e-06     617     693 ..     534     612 ..     513     624 .. 0.88
   2 !   24.1   0.0     3e-08   2.2e-06     464     537 ..     643     717 ..     636     723 .. 0.87
   3 !   31.0   0.0   2.4e-10   1.7e-08     617     702 ..     889     975 ..     852     984 .. 0.91

  Alignments for each domain:
  == domain 1    score: 24.8 bits;  conditional E-value: 1.8e-08
   TIGR00958 617 qlsgGqkqriAiARALvrkPrvLiLDeAtSALDa.eveqllqesksaksrtvlliahrLstvek.adkilvlkkgsvve 693
                  lsgG + ++A+ RA++ +  +L+LDe t  LD  +v+ ++    s ks t +++ h +++  + + ++l +   ++++
  MMETSP1137-20121227|7546_1 534 RLSGGWRMKLALVRAMLMRADILLLDEPTNHLDPgNVKWVIDYLTSLKSVTSIIVSHDIKVLDQvCTHVLQIDGLKLKQ 612
                 69*******************************9899999999*****************9977478888887767766 PP

  == domain 2    score: 24.1 bits;  conditional E-value: 3e-08
   TIGR00958 464 lelsgtlapknleGk..veFqdVsFsYPsrpdkpvlkdLtftlepGevvalVGPsGsGKStvaallenlYqPtgGq 537
                 ++++g+l+    +Gk  ++  +++F+YP  p+ + l + t  ++  +  a +G +G GKSt++ ll    +P+ G+
  MMETSP1137-20121227|7546_1 643 FPQPGNLEGVSSKGKhiMKMTNITFTYPGAPKPQ-LTNVTVRVSLSTRAACIGANGAGKSTMIKLLTGELEPDRGS 717
                 667777777777776547899*********9755.89******************************999999985 PP

  == domain 3    score: 31.0 bits;  conditional E-value: 2.4e-10
   TIGR00958 617 qlsgGqkqriAiARALvrkPrvLiLDeAtSALDaeveqllqesksaksrtvlliahrLstvek.adkilvlkkgsvvelGthkqLme 702
                  lsgGqk ++ +A A+   P ++iLDe t  LD ++  +l e  +a++  v++i h  + v + + ++  l++ +++ +G ++ L +
  MMETSP1137-20121227|7546_1 889 ALSGGQKVKVVLAAAMWNTPHIVILDEPTNYLDRDSLGALAEAIHAYDGGVVIISHNAQFVDQvCPEVWHLENHTLNLKGSYDWLES 975
                 59***********************************************************87478999999999999999988865 PP

>> TIGR02142  modC_ABC: molybdate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.0      0.17        12      21      44 ..     433     456 ..     413     461 .. 0.74
   2 !   41.2   0.0   3.6e-13   2.6e-11     125     212 ..     528     612 ..     500     635 .. 0.89
   3 !   11.9   0.0   0.00029     0.021      16      53 ..     680     717 ..     675     734 .. 0.82
   4 !   22.3   0.0     2e-07   1.4e-05     128     226 ..     886     980 ..     873    1027 .. 0.80

  Alignments for each domain:
  == domain 1    score: 2.8 bits;  conditional E-value: 0.17
   TIGR02142  21 pgkgvtalFGrsGsGktslirlia 44 
                 +   + +l G+  sGktsl+r+ia
  MMETSP1137-20121227|7546_1 433 KRGYRYGLCGKNDSGKTSLMRAIA 456
                 443567999*************98 PP

  == domain 2    score: 41.2 bits;  conditional E-value: 3.6e-13
   TIGR02142 125 leRlpgkLsGGekqRvaigRAlLssPeLLlmDePLaaLDekrkkeilPyLerlsaelkiPilyvsHsldevarladrvvvledGrvka 212
                 l++++g+LsGG + + a+ RA+L + ++Ll+DeP   LD    k ++ yL +l++ ++   + vsH+++ + ++  +v+ ++  ++k 
  MMETSP1137-20121227|7546_1 528 LTKQVGRLSGGWRMKLALVRAMLMRADILLLDEPTNHLDPGNVKWVIDYLTSLKSVTS---IIVSHDIKVLDQVCTHVLQIDGLKLKQ 612
                 78899************************************************98766...689**************9988777764 PP

  == domain 3    score: 11.9 bits;  conditional E-value: 0.00029
   TIGR02142  16 vdlelpgkgvtalFGrsGsGktslirliaGLtrpdege 53 
                 v ++++ + ++a  G+ G+Gk+++i+l++G + pd+g 
  MMETSP1137-20121227|7546_1 680 VTVRVSLSTRAACIGANGAGKSTMIKLLTGELEPDRGS 717
                 445555566899*******************9999985 PP

  == domain 4    score: 22.3 bits;  conditional E-value: 2e-07
   TIGR02142 128 lpgkLsGGekqRvaigRAlLssPeLLlmDePLaaLDekrkkeilPyLerlsaelkiPilyvsHsldevarladrvvvledGrvkaagkleevlaskdls 226
                 + g LsGG k +v ++ A+  +P+++++DeP   LD+ +    l  L +  +  +  ++ +sH+ + v ++  +v  le+  ++ +g+ + + + ++  
  MMETSP1137-20121227|7546_1 886 RMGALSGGQKVKVVLAAAMWNTPHIVILDEPTNYLDRDS----LGALAEAIHAYDGGVVIISHNAQFVDQVCPEVWHLENHTLNLKGSYDWLESANKEA 980
                 5689********************************876....55566666678889999***************999999999999998887766544 PP

>> TIGR02982  heterocyst_DevA: ABC exporter ATP-binding subunit, DevA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.0      0.94        68      17      52 ..     421     456 ..     411     460 .. 0.85
   2 !   37.5   0.0   5.3e-12   3.8e-10     122     215 ..     507     606 ..     495     611 .. 0.85
   3 ?    5.0   0.0     0.048       3.5      21      68 ..     677     724 ..     659     742 .. 0.78
   4 !   34.6   0.0   4.3e-11   3.1e-09     111     206 ..     857     950 ..     845     965 .. 0.75

  Alignments for each domain:
  == domain 1    score: 0.8 bits;  conditional E-value: 0.94
   TIGR02982  17 rkqvlfdinleiepgeiviltGpsGsGkttlltlig 52 
                 +k +l++ +l+++ g    l G+  sGkt l+  i+
  MMETSP1137-20121227|7546_1 421 NKVLLNQTQLKLKRGYRYGLCGKNDSGKTSLMRAIA 456
                 566788999*********************998775 PP

  == domain 2    score: 37.5 bits;  conditional E-value: 5.3e-12
   TIGR02982 122 aeelleavglee........rldykpedlsgGqkqrvaiaralvarPklvladePtaaldkksgrevvellqklareqgttillvthdnrild.vadrivkme 215
                 a+e l +vg+ e         l ++   lsgG + ++a+ ra+  r +++l dePt  ld    + v++ l+ l   +++t+++v hd ++ld v+  +++++
  MMETSP1137-20121227|7546_1 507 AREKLLSVGFAEddsgmapaSLTKQVGRLSGGWRMKLALVRAMLMRADILLLDEPTNHLDPGNVKWVIDYLTSL---KSVTSIIVSHDIKVLDqVCTHVLQID 606
                 6666777777666777777788899999**************************************99998877...799************85777787776 PP

  == domain 3    score: 5.0 bits;  conditional E-value: 0.048
   TIGR02982  21 lfdinleiepgeiviltGpsGsGkttlltligglrsvqeGelkvlgke 68 
                 l ++ ++++        G+ G+Gk t++ l++g  +   G+ +v+ + 
  MMETSP1137-20121227|7546_1 677 LTNVTVRVSLSTRAACIGANGAGKSTMIKLLTGELEPDRGSGEVWRHP 724
                 66677777777777778****************999999999999876 PP

  == domain 4    score: 34.6 bits;  conditional E-value: 4.3e-11
   TIGR02982 111 eklsakeakakaeelleavgleerl..dykpedlsgGqkqrvaiaralvarPklvladePtaaldkksgrevvellqklareqgttillvthdnrild 206
                 ++l++  +++ +e+ l+ vgl  ++  + +   lsgGqk +v +a a+ + P++v+ dePt  ld++s  ++ e ++         ++++ h+++ +d
  MMETSP1137-20121227|7546_1 857 TQLQRPLTQKFVEAHLNDVGLAPEFatHTRMGALSGGQKVKVVLAAAMWNTPHIVILDEPTNYLDRDSLGALAEAIH----AYDGGVVIISHNAQFVD 950
                 445555556667889999999987611455679*********************************99877766654....34556788888887765 PP

>> TIGR02769  nickel_nikE: nickel import ATP-binding protein NikE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   0.0     0.019       1.4      20      57 ..     418     455 ..     408     459 .. 0.88
   2 !   28.4   0.0   3.1e-09   2.2e-07     140     228 ..     524     609 ..     507     625 .. 0.89
   3 !   14.3   0.0   6.2e-05    0.0045      24      67 ..     674     717 ..     657     736 .. 0.88
   4 !   28.1   0.0   3.8e-09   2.8e-07     121     249 ..     859     984 ..     847     988 .. 0.78

  Alignments for each domain:
  == domain 1    score: 6.2 bits;  conditional E-value: 0.019
   TIGR02769  20 kkqrkavldnvslsleeGetvallGrsGaGkstlarll 57 
                 + + k +l++ +l+l++G   +l G+  +Gk+ l r +
  MMETSP1137-20121227|7546_1 418 AYGNKVLLNQTQLKLKRGYRYGLCGKNDSGKTSLMRAI 455
                 66778899**************************9976 PP

  == domain 2    score: 28.4 bits;  conditional E-value: 3.1e-09
   TIGR02769 140 rsevldklPrqlsGGqlqriniaralavePklivldeavsnldlvlqasilellkklkqefGlaylfithdlrlvqkfaqrvlvldeGq 228
                  +  l k+  +lsGG   ++++ ra+ ++  +++lde    ld  +   +++ l+ lk    ++ ++++hd+++ ++++ +vl +d+ +
  MMETSP1137-20121227|7546_1 524 APASLTKQVGRLSGGWRMKLALVRAMLMRADILLLDEPTNHLDPGNVKWVIDYLTSLKS---VTSIIVSHDIKVLDQVCTHVLQIDGLK 609
                 56677888899**********************************************97...56789***************9988655 PP

  == domain 3    score: 14.3 bits;  conditional E-value: 6.2e-05
   TIGR02769  24 kavldnvslsleeGetvallGrsGaGkstlarlllGlekPakGe 67 
                 k+ l+nv + +      a +G  GaGkst+ +ll G  +P +G+
  MMETSP1137-20121227|7546_1 674 KPQLTNVTVRVSLSTRAACIGANGAGKSTMIKLLTGELEPDRGS 717
                 67799*******************************99999885 PP

  == domain 4    score: 28.1 bits;  conditional E-value: 3.8e-09
   TIGR02769 121 ldeserkariaellelvelrsevldk.lPrqlsGGqlqriniaralavePklivldeavsnldlvlqasilellkklkqefGlaylfithdlrlvqkfaqrvlvldeGqiveeikvaellsfkhpagrll 249
                 l++   ++ +++ l+ v+l +e + + +   lsGGq  ++ +a a+   P++++lde    ld+       +l +++++  G  +++i+h+ + v++++ +v  l++  +  + +   l s +++a+++ 
  MMETSP1137-20121227|7546_1 859 LQRPLTQKFVEAHLNDVGLAPEFATHtRMGALSGGQKVKVVLAAAMWNTPHIVILDEPTNYLDRDSLG---ALAEAIHAYDG-GVVIISHNAQFVDQVCPEVWHLENHTLNLKGSYDWLESANKEAVKQA 984
                 5555566677888999*****9987615678********************************86533...33445555555.6799***************9999987766666666666666666665 PP

>> TIGR01978  sufC: FeS assembly ATPase SufC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.6   0.0    0.0034      0.25      11      50 ..     420     459 ..     410     463 .. 0.90
   2 !   18.4   0.0   3.5e-06   0.00025     145     214 ..     535     602 ..     516     613 .. 0.89
   3 !   16.4   0.0   1.4e-05     0.001      13      60 ..     674     721 ..     662     730 .. 0.89
   4 !   31.9   0.0   2.6e-10   1.9e-08     119     217 ..     864     959 ..     841     983 .. 0.83

  Alignments for each domain:
  == domain 1    score: 8.6 bits;  conditional E-value: 0.0034
   TIGR01978  11 edkeiLkglnlevkkGevhaimGpnGsGkstLskvlaghe 50 
                  +k +L++ +l++k+G  + + G+n sGk  L++++a ++
  MMETSP1137-20121227|7546_1 420 GNKVLLNQTQLKLKRGYRYGLCGKNDSGKTSLMRAIANQQ 459
                 678899******************************9875 PP

  == domain 2    score: 18.4 bits;  conditional E-value: 3.5e-06
   TIGR01978 145 fsGGekkrneilqlallePklaiLDeiDsGlDvDalkivaegvnklreeekalliithyerllelikPdv 214
                  sGG + +  +++ +l++ ++ +LDe    lD   +k v++ + +l++   + +i++h  ++l+++   v
  MMETSP1137-20121227|7546_1 535 LSGGWRMKLALVRAMLMRADILLLDEPTNHLDPGNVKWVIDYLTSLKSV--TSIIVSHDIKVLDQVCTHV 602
                 79*******************************************9875..5699********9986555 PP

  == domain 3    score: 16.4 bits;  conditional E-value: 1.4e-05
   TIGR01978  13 keiLkglnlevkkGevhaimGpnGsGkstLskvlaghekyevtsGeik 60 
                 k+ L+++++ v+  +  a +G+nG+Gkst+ k l+g+ +    sGe++
  MMETSP1137-20121227|7546_1 674 KPQLTNVTVRVSLSTRAACIGANGAGKSTMIKLLTGELEPDRGSGEVW 721
                 567999******************************988887777775 PP

  == domain 4    score: 31.9 bits;  conditional E-value: 2.6e-10
   TIGR01978 119 fekllkeklelleldeelleRslneGfsGGekkrneilqlallePklaiLDeiDsGlDvDalkivaegvnklreeekalliithyerllelikPdvvhv 217
                  +k ++++l+ + l  e+++ +     sGG k +  +   +  +P+++iLDe    lD D+l ++ae ++ +   + +++ii+h+ ++++++ P+v h+
  MMETSP1137-20121227|7546_1 864 TQKFVEAHLNDVGLAPEFATHTRMGALSGGQKVKVVLAAAMWNTPHIVILDEPTNYLDRDSLGALAEAIHAY---DGGVVIISHNAQFVDQVCPEVWHL 959
                 56778888999999999999999999*********99999999************************99987...679****************98775 PP

>> TIGR03771  anch_rpt_ABC: anchored repeat-type ABC transporter, ATP-binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0         5   3.6e+02      54     132 ..     163     239 ..     152     247 .. 0.78
   2 ?    6.6   0.0     0.017       1.2       2      27 ..     431     456 ..     430     461 .. 0.89
   3 !   29.6   0.0   1.6e-09   1.1e-07     108     188 ..     529     607 ..     501     615 .. 0.88
   4 !    8.7   0.0    0.0038      0.27      10      57 ..     691     734 ..     683     740 .. 0.85
   5 !   29.2   0.0     2e-09   1.5e-07      83     185 ..     859     958 ..     847     978 .. 0.76

  Alignments for each domain:
  == domain 1    score: -1.5 bits;  conditional E-value: 5
   TIGR03771  54 vpqrhefawdfpidveqtvlsGragliGllrrpkkadfaavadalervklteladrpvGelsGGqrqrvlvaralavkp 132
                 vp    + wd  ++v+++  +  +   G++     + f  v + ++ +   el   +v +l+G      + a alav  
  MMETSP1137-20121227|7546_1 163 VPVLSSLMWDTKLQVKEAATAAMTEVCGVMDNKDIKGF--VPQIVDCILKPELVAETVHNLAGVVFVSEVFASALAVMA 239
                 67777889999999999999999999999987776666..556677777778888888888888777777788887765 PP

  == domain 2    score: 6.6 bits;  conditional E-value: 0.017
   TIGR03771   2 svdkGellgllGpnGaGkttllrail 27 
                 ++++G   gl G n +Gkt+l+rai 
  MMETSP1137-20121227|7546_1 431 KLKRGYRYGLCGKNDSGKTSLMRAIA 456
                 67889999****************95 PP

  == domain 3    score: 29.6 bits;  conditional E-value: 1.6e-09
   TIGR03771 108 drpvGelsGGqrqrvlvaralavkpslllldepftGldlpsqellvelfeelagegtailmtthdlaeavatcdrvvllng 188
                  + vG+lsGG r ++ + ra+ ++  +llldep   ld    + +++ +++l +   + ++++hd+    ++c  v+ ++g
  MMETSP1137-20121227|7546_1 529 TKQVGRLSGGWRMKLALVRAMLMRADILLLDEPTNHLDPGNVKWVIDYLTSLKSV--TSIIVSHDIKVLDQVCTHVLQIDG 607
                 578************************************************9764..556678***999999999987765 PP

  == domain 4    score: 8.7 bits;  conditional E-value: 0.0038
   TIGR03771  10 gllGpnGaGkttllrailglikvakGsvkvagkssrkgrreiGyvpqr 57 
                 + +G nGaGk+t+++ + g +++ +Gs +v      +  +++ yv q 
  MMETSP1137-20121227|7546_1 691 ACIGANGAGKSTMIKLLTGELEPDRGSGEVWR----HPNCRVAYVAQH 734
                 678**********************9877765....578999999984 PP

  == domain 5    score: 29.2 bits;  conditional E-value: 2e-09
   TIGR03771  83 lrrpkkadfaavadalervklt.elad.rpvGelsGGqrqrvlvaralavkpslllldepftGldlpsqellvelfeelagegtailmtthdlaeavatcdrvvl 185
                 l+rp  + f  v++ l+ v l+ e+a    +G lsGGq+ +v++a a+   p++++ldep   ld  s   l+e   ++ + +  +++ +h+     ++c  v  
  MMETSP1137-20121227|7546_1 859 LQRPLTQKF--VEAHLNDVGLApEFAThTRMGALSGGQKVKVVLAAAMWNTPHIVILDEPTNYLDRDSLGALAE---AIHAYDGGVVIISHNAQFVDQVCPEVWH 958
                 566666655..67788899887456651469**********************************877666665...5555566788888887776677776654 PP

>> TIGR03411  urea_trans_UrtD: urea ABC transporter, ATP-binding protein UrtD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.0      0.21        15      17      50 ..     424     457 ..     413     478 .. 0.88
   2 !   19.5   0.1   1.9e-06   0.00013     137     214 ..     528     604 ..     522     623 .. 0.84
   3 !   22.5   0.0   2.2e-07   1.6e-05      17      58 ..     676     717 ..     658     737 .. 0.79
   4 !   30.1   0.0   1.1e-09   7.6e-08     108     231 ..     851     975 ..     828     983 .. 0.79

  Alignments for each domain:
  == domain 1    score: 2.9 bits;  conditional E-value: 0.21
   TIGR03411  17 alndlslsveegelrviiGpnGaGkttllDvitG 50 
                  ln+ +l++++g    + G n +Gkt l+ +i+ 
  MMETSP1137-20121227|7546_1 424 LLNQTQLKLKRGYRYGLCGKNDSGKTSLMRAIAN 457
                 589999******999**************99975 PP

  == domain 2    score: 19.5 bits;  conditional E-value: 1.9e-06
   TIGR03411 137 adkkaglLshGqkqwLeigmllvqepkllllDePvaGmtdeetektaellkelakersvvvvehDmefvrelaekvtv 214
                  +k+ g Ls G +  L +   ++ ++++lllDeP+  +   + + + + l++l++ +s+ +v hD++ ++++ ++v  
  MMETSP1137-20121227|7546_1 528 LTKQVGRLSGGWRMKLALVRAMLMRADILLLDEPTNHLDPGNVKWVIDYLTSLKSVTSI-IVSHDIKVLDQVCTHVLQ 604
                 5678999***********999999*****************************988776.679******999988854 PP

  == domain 3    score: 22.5 bits;  conditional E-value: 2.2e-07
   TIGR03411  17 alndlslsveegelrviiGpnGaGkttllDvitGktrpdeGs 58 
                  l++++++v+     + iG+nGaGk+t++ ++tG  +pd+Gs
  MMETSP1137-20121227|7546_1 676 QLTNVTVRVSLSTRAACIGANGAGKSTMIKLLTGELEPDRGS 717
                 47788888888888999**********************997 PP

  == domain 4    score: 30.1 bits;  conditional E-value: 1.1e-09
   TIGR03411 108 vlallfarlske.ekerieevleligLeek..adkkaglLshGqkqwLeigmllvqepkllllDePvaGmtdeetektaellkelakersvvvvehDmefvrelaekvtvlheGkvlaeGsldevqa 231
                  +a+l+++l++  +++ +e+ l+ +gL+ +  ++++ g+Ls Gqk  + ++  + + p++++lDeP+  + ++     ae +++   +  vv++ h+ +fv+++  +v  l++ ++  +Gs d +++
  MMETSP1137-20121227|7546_1 851 KIAALATQLQRPlTQKFVEAHLNDVGLAPEfaTHTRMGALSGGQKVKVVLAAAMWNTPHIVILDEPTNYLDRDSLGALAEAIHAY--DGGVVIISHNAQFVDQVCPEVWHLENHTLNLKGSYDWLES 975
                 455666666554156779999******98722567789*****************************999877777777777654..5689*****************9999999999999887765 PP

>> TIGR02204  MsbA_rel: ABC transporter, permease/ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0       5.4   3.9e+02     352     384 ..     421     453 ..     410     456 .. 0.88
   2 !   29.6   0.0   8.2e-10   5.9e-08     472     537 ..     530     594 ..     516     611 .. 0.86
   3 !   26.4   0.0   7.9e-09   5.7e-07     313     396 ..     633     717 ..     628     721 .. 0.82
   4 !   19.0   0.0   1.4e-06   9.8e-05     475     534 ..     888     945 ..     866     974 .. 0.86

  Alignments for each domain:
  == domain 1    score: -2.8 bits;  conditional E-value: 5.4
   TIGR02204 352 dqkaldgldltvrpGetvalvGPsGaGkstlle 384
                 ++  l++ +l+++ G +  l G   +Gk+ l++
  MMETSP1137-20121227|7546_1 421 NKVLLNQTQLKLKRGYRYGLCGKNDSGKTSLMR 453
                 4567999**********************9987 PP

  == domain 2    score: 29.6 bits;  conditional E-value: 8.2e-10
   TIGR02204 472 ergvtLsGGqkqriaiarailkdapiLLLdeatsaLdaeseqlvqqaleelmkgrttlviahrLat 537
                  +  +LsGG + ++a+ ra+l  a iLLLde t+ Ld  + + v   l +l k  t ++++h +  
  MMETSP1137-20121227|7546_1 530 KQVGRLSGGWRMKLALVRAMLMRADILLLDEPTNHLDPGNVKWVIDYLTSL-KSVTSIIVSHDIKV 594
                 55668***********************************99999999887.56799999998765 PP

  == domain 3    score: 26.4 bits;  conditional E-value: 7.9e-09
   TIGR02204 313 ellkaksdikaPa..qpkalpakvrgeiefeevkfayParpdqkaldgldltvrpGetvalvGPsGaGkstllelllrfydPqsGa 396
                 el  +k +++ P+  + + ++ k +  +++ +++f+yP  p ++ l ++ ++v    + a +G  GaGkst+++ll    +P +G+
  MMETSP1137-20121227|7546_1 633 ELKATKFTMRFPQpgNLEGVSSKGKHIMKMTNITFTYPGAP-KPQLTNVTVRVSLSTRAACIGANGAGKSTMIKLLTGELEPDRGS 717
                 565666666555411445566666677999***********.99********************************9999998885 PP

  == domain 4    score: 19.0 bits;  conditional E-value: 1.4e-06
   TIGR02204 475 vtLsGGqkqriaiarailkdapiLLLdeatsaLdaeseqlvqqaleelmkgrttlviahr 534
                   LsGGqk ++ +a a+ +   i++Lde t+ Ld +s  ++ +a+++   +   ++i+h 
  MMETSP1137-20121227|7546_1 888 GALSGGQKVKVVLAAAMWNTPHIVILDEPTNYLDRDSLGALAEAIHAY--DGGVVIISHN 945
                 479**********************************99999999865..3445667775 PP

>> TIGR01193  bacteriocin_ABC: ABC-type bacteriocin transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.2   0.0    0.0091      0.66     459     521 ..     393     456 ..     383     462 .. 0.77
   2 ?    2.5   0.0      0.12       8.7      68      99 ..     481     512 ..     466     531 .. 0.76
   3 !   32.1   0.0   1.3e-10   9.7e-09     604     675 ..     527     598 ..     520     612 .. 0.90
   4 !   17.8   0.0   2.9e-06   0.00021     473     531 ..     659     718 ..     648     751 .. 0.77
   5 !   12.8   0.0   8.9e-05    0.0064     608     644 ..     886     922 ..     864     977 .. 0.74

  Alignments for each domain:
  == domain 1    score: 6.2 bits;  conditional E-value: 0.0091
   TIGR01193 459 kekkkltelenlngdievndvsysyGygsevl.edislkikknekitlvGlsGsGkstlakllv 521
                 k+ k  + +e++    ++ d ++s  yg++vl ++ +lk+k+  +  l G   sGk++l++ + 
  MMETSP1137-20121227|7546_1 393 KHVKIEEVKEEADDAEQLCDCTFSLAYGNKVLlNQTQLKLKRGYRYGLCGKNDSGKTSLMRAIA 456
                 444433344444555578899*******998637899**********************98765 PP

  == domain 2    score: 2.5 bits;  conditional E-value: 0.12
   TIGR01193  68 knlelPliahvlkeeklphyyvvyevtkdsll 99 
                 +  e+P+i  v+k+e l  y + ye+ +++ll
  MMETSP1137-20121227|7546_1 481 ELSEMPVIDFVVKHEGLKAYGITYEMAREKLL 512
                 45689***********************9998 PP

  == domain 3    score: 32.1 bits;  conditional E-value: 1.3e-10
   TIGR01193 604 elseeassisgGqkqrlalarallsdskvlildestsnldlltekkivenllklkdktiifvahrlsvakks 675
                 +l+++   +sgG + +lal ra+l  +++l+lde t +ld    k +++ l +lk  t i v+h ++v +++
  MMETSP1137-20121227|7546_1 527 SLTKQVGRLSGGWRMKLALVRAMLMRADILLLDEPTNHLDPGNVKWVIDYLTSLKSVTSIIVSHDIKVLDQV 598
                 68888999***********************************************************98775 PP

  == domain 4    score: 17.8 bits;  conditional E-value: 2.9e-06
   TIGR01193 473 dievndvsysy.GygsevledislkikknekitlvGlsGsGkstlakllvkffqaesGei 531
                  +++ ++++ y G  ++ l +++++++   + + +G  G+Gkst++kll +  +++ G  
  MMETSP1137-20121227|7546_1 659 IMKMTNITFTYpGAPKPQLTNVTVRVSLSTRAACIGANGAGKSTMIKLLTGELEPDRGSG 718
                 57899******889999*********************************9997665543 PP

  == domain 5    score: 12.8 bits;  conditional E-value: 8.9e-05
   TIGR01193 608 eassisgGqkqrlalarallsdskvlildestsnldl 644
                    ++sgGqk ++ la a+    +++ilde t  ld 
  MMETSP1137-20121227|7546_1 886 RMGALSGGQKVKVVLAAAMWNTPHIVILDEPTNYLDR 922
                 3468******************************996 PP

>> TIGR00968  3a0106s01: sulfate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.1   0.0   0.00015     0.011       9      49 ..     418     458 ..     413     501 .. 0.81
   2 !   30.4   0.0   7.7e-10   5.5e-08     130     213 ..     534     614 ..     526     634 .. 0.85
   3 !    9.2   0.0    0.0023      0.17      16      56 ..     677     717 ..     661     733 .. 0.86
   4 !   19.6   0.0   1.6e-06   0.00011     127     163 ..     886     922 ..     840     975 .. 0.73

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 0.00015
   TIGR00968   9 rfGdfqalddvdlevktGslvallGpsGsGkstllrviaGl 49 
                  +G+ + l++ +l++k G   +l G   sGk++l+r+ia  
  MMETSP1137-20121227|7546_1 418 AYGNKVLLNQTQLKLKRGYRYGLCGKNDSGKTSLMRAIANQ 458
                 79************************************954 PP

  == domain 2    score: 30.4 bits;  conditional E-value: 7.7e-10
   TIGR00968 130 qlsGGqrqrvalaralavepqvllldepfgaldakvrkelrawlrklhdevkvttvfvthdqeealevadrivvlekGkieqvg 213
                 +lsGG r ++al ra+ +  ++llldep   ld    k +  +l  l+   +vt+++v+hd +   +v  ++  ++  k++q  
  MMETSP1137-20121227|7546_1 534 RLSGGWRMKLALVRAMLMRADILLLDEPTNHLDPGNVKWVIDYLTSLK---SVTSIIVSHDIKVLDQVCTHVLQIDGLKLKQYK 614
                 79*******************************998888888888886...69*********9999999999888888887764 PP

  == domain 3    score: 9.2 bits;  conditional E-value: 0.0023
   TIGR00968  16 lddvdlevktGslvallGpsGsGkstllrviaGlekpdsGr 56 
                 l +v + v      a +G  G+Gkst++++++G  +pd G 
  MMETSP1137-20121227|7546_1 677 LTNVTVRVSLSTRAACIGANGAGKSTMIKLLTGELEPDRGS 717
                 67788888899999*******************99999875 PP

  == domain 4    score: 19.6 bits;  conditional E-value: 1.6e-06
   TIGR00968 127 ypsqlsGGqrqrvalaralavepqvllldepfgalda 163
                     lsGGq+ +v la a+   p++++ldep   ld 
  MMETSP1137-20121227|7546_1 886 RMGALSGGQKVKVVLAAAMWNTPHIVILDEPTNYLDR 922
                 3467*****************************9994 PP

>> TIGR01846  type_I_sec_HlyB: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.0      0.11       7.7     462     503 ..     414     455 ..     398     461 .. 0.85
   2 !   24.3   0.0   2.6e-08   1.8e-06     587     664 ..     528     605 ..     519     616 .. 0.87
   3 !   13.3   0.0   5.7e-05    0.0041     456     512 ..     660     716 ..     645     721 .. 0.90
   4 !   30.3   0.0   3.9e-10   2.8e-08     590     678 ..     886     973 ..     875     983 .. 0.88

  Alignments for each domain:
  == domain 1    score: 2.4 bits;  conditional E-value: 0.11
   TIGR01846 462 rfrykedspevlsnlsldikaGeviGivGpsGsGkstltkll 503
                 +f  +  + ++l++ +l++k G   G+ G+  sGk+ l + +
  MMETSP1137-20121227|7546_1 414 TFSLAYGNKVLLNQTQLKLKRGYRYGLCGKNDSGKTSLMRAI 455
                 56666667789999**********************998866 PP

  == domain 2    score: 24.3 bits;  conditional E-value: 2.6e-08
   TIGR01846 587 vgekGaalsGGqrqrialaralvanPrilildeatsaldyeseavimrnlreickgrtviiiahrlstvra.adrilvl 664
                 ++ + + lsGG r ++al ra++    il+lde t  ld    + + + l+++ k+ t ii++h ++ + + + ++l +
  MMETSP1137-20121227|7546_1 528 LTKQVGRLSGGWRMKLALVRAMLMRADILLLDEPTNHLDPGNVKWVIDYLTSL-KSVTSIIVSHDIKVLDQvCTHVLQI 605
                 5677899*******************************************997.6789999***999886536666655 PP

  == domain 3    score: 13.3 bits;  conditional E-value: 5.7e-05
   TIGR01846 456 iefenirfrykedspevlsnlsldikaGeviGivGpsGsGkstltkllqrlyvPekG 512
                 +++ ni+f y     + l+n+++ +   +    +G  G+Gkst+ kll     P++G
  MMETSP1137-20121227|7546_1 660 MKMTNITFTYPGAPKPQLTNVTVRVSLSTRAACIGANGAGKSTMIKLLTGELEPDRG 716
                 6899******999999********************************988888887 PP

  == domain 4    score: 30.3 bits;  conditional E-value: 3.9e-10
   TIGR01846 590 kGaalsGGqrqrialaralvanPrilildeatsaldyeseavimrnlreickgrtviiiahrlstvra.adrilvlekGkivesGkheel 678
                 + +alsGGq+ ++ la a+ + P+i+ilde t  ld +s  ++ + +++      v+ii+h  + v + + ++  le+  +  +G+++ l
  MMETSP1137-20121227|7546_1 886 RMGALSGGQKVKVVLAAAMWNTPHIVILDEPTNYLDRDSLGALAEAIHAYD--GGVVIISHNAQFVDQvCPEVWHLENHTLNLKGSYDWL 973
                 5689*******************************************9865..56999****9999654899999999999999999876 PP

>> TIGR03005  ectoine_ehuA: ectoine/hydroxyectoine ABC transporter, ATP-binding protein EhuA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   0.0     0.052       3.7       9      46 ..     418     455 ..     413     463 .. 0.91
   2 !   34.1   0.0   4.7e-11   3.4e-09     141     221 ..     529     606 ..     483     618 .. 0.77
   3 ?    6.1   0.0     0.017       1.2      16      48 ..     677     709 ..     671     742 .. 0.86
   4 !   23.1   0.0     1e-07   7.6e-06     130     229 ..     871     968 ..     852     984 .. 0.77

  Alignments for each domain:
  == domain 1    score: 4.5 bits;  conditional E-value: 0.052
   TIGR03005   9 rfgeltvldglelevaaGekvaliGpsGsGkstilril 46 
                  +g+  +l++ +l++++G +  l G   sGk++++r +
  MMETSP1137-20121227|7546_1 418 AYGNKVLLNQTQLKLKRGYRYGLCGKNDSGKTSLMRAI 455
                 5899999****************************976 PP

  == domain 2    score: 34.1 bits;  conditional E-value: 4.7e-11
   TIGR03005 141 dalpaqlsGGqkqrvaiaralalrpkvllfdevtsaldpelveevlnvlrrlasetdltmllvthemgfarefadrvlffd 221
                  +   +lsGG + ++a+ ra+ +r  +ll+de+t  ldp  v+ v+     l+s + +t ++v+h+++   +++  vl  d
  MMETSP1137-20121227|7546_1 529 TKQVGRLSGGWRMKLALVRAMLMRADILLLDEPTNHLDPGNVKWVI---DYLTSLKSVTSIIVSHDIKVLDQVCTHVLQID 606
                 4445689********************************7766655...55666678999********9999999998776 PP

  == domain 3    score: 6.1 bits;  conditional E-value: 0.017
   TIGR03005  16 ldglelevaaGekvaliGpsGsGkstilrilmt 48 
                 l ++ + v+   ++a iG  G+Gkst++++l  
  MMETSP1137-20121227|7546_1 677 LTNVTVRVSLSTRAACIGANGAGKSTMIKLLTG 709
                 566788899999*****************9864 PP

  == domain 4    score: 23.1 bits;  conditional E-value: 1e-07
   TIGR03005 130 lldmvGladkadal..paqlsGGqkqrvaiaralalrpkvllfdevtsaldpelveevlnvlrrlasetdltmllvthemgfarefadrvlffdkGkiveeG 229
                  l+ vGla    +      lsGGqk +v +a a+   p+++++de+t  ld + ++     l +  +  d  +++++h+ +f  +++  v  +++  +  +G
  MMETSP1137-20121227|7546_1 871 HLNDVGLAPEFATHtrMGALSGGQKVKVVLAAAMWNTPHIVILDEPTNYLDRDSLG----ALAEAIHAYDGGVVIISHNAQFVDQVCPEVWHLENHTLNLKG 968
                 5788999876443311467********************************87655....555666778889999999999999988888777766665555 PP

>> TIGR01277  thiQ: thiamine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.0       1.2        83       8      46 ..     419     457 ..     415     468 .. 0.86
   2 !   29.0   0.0   2.3e-09   1.6e-07     124     209 ..     530     612 ..     508     615 .. 0.88
   3 !   16.7   0.0   1.3e-05   0.00091      15      55 ..     678     718 ..     660     732 .. 0.72
   4 !   18.4   0.0   3.8e-06   0.00027     110     195 ..     869     952 ..     855     968 .. 0.73

  Alignments for each domain:
  == domain 1    score: 0.5 bits;  conditional E-value: 1.2
   TIGR01277   8 yeykhlplefdlsveaGervailGesGaGkstllnliaG 46 
                 y +k l  + +l++++G r  + G+  +Gk++l+  ia 
  MMETSP1137-20121227|7546_1 419 YGNKVLLNQTQLKLKRGYRYGLCGKNDSGKTSLMRAIAN 457
                 5566677788999*********************99985 PP

  == domain 2    score: 29.0 bits;  conditional E-value: 2.3e-09
   TIGR01277 124 rlpeelsGGqrqrvalarclvrekpillldepfsaldpklreemlalvkkladekkltlllvthslsdaaaiasqvvvvedGkikv 209
                 +  ++lsGG r ++al r ++    illldep   ldp     +  ++  l++ k +t ++v+h+++ + ++ ++v+ ++  k+k+
  MMETSP1137-20121227|7546_1 530 KQVGRLSGGWRMKLALVRAMLMRADILLLDEPTNHLDPGN---VKWVIDYLTSLKSVTSIIVSHDIKVLDQVCTHVLQIDGLKLKQ 612
                 55679*********************************74...55678899999**************999999999887766665 PP

  == domain 3    score: 16.7 bits;  conditional E-value: 1.3e-05
   TIGR01277  15 lefdlsveaGervailGesGaGkstllnliaGflepasGei 55 
                  +  + v+   r a +G  GaGkst+++l++G lep +G+ 
  MMETSP1137-20121227|7546_1 678 TNVTVRVSLSTRAACIGANGAGKSTMIKLLTGELEPDRGSG 718
                 344556777899************************88764 PP

  == domain 4    score: 18.4 bits;  conditional E-value: 3.8e-06
   TIGR01277 110 edvarqvGiadyler..lpeelsGGqrqrvalarclvrekpillldepfsaldpklreemlalvkkladekkltlllvthslsdaaai 195
                 e+  ++vG+a  ++     + lsGGq+ +v la  + +   i++ldep   ld+    + l  +++  +  +  +++++h+ + + ++
  MMETSP1137-20121227|7546_1 869 EAHLNDVGLAPEFAThtRMGALSGGQKVKVVLAAAMWNTPHIVILDEPTNYLDR----DSLGALAEAIHAYDGGVVIISHNAQFVDQV 952
                 555566666654443113478****************************99995....445556677778888888888887665555 PP

>> TIGR02324  CP_lyasePhnL: phosphonate C-P lyase system protein PhnL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   0.0     0.011      0.78      23      55 ..     424     456 ..     413     464 .. 0.88
   2 !   29.0   0.0   2.1e-09   1.5e-07     150     222 ..     535     605 ..     494     607 .. 0.91
   3 !   14.4   0.0   5.9e-05    0.0042      15      67 ..     668     720 ..     657     742 .. 0.80
   4 !   14.4   0.0   5.7e-05    0.0041     149     211 ..     889     948 ..     863     960 .. 0.78

  Alignments for each domain:
  == domain 1    score: 7.0 bits;  conditional E-value: 0.011
   TIGR02324  23 vlkevsleveaGelvalsGksGaGkstllksly 55 
                  l++ +l+++ G    l Gk  +Gk +l++++ 
  MMETSP1137-20121227|7546_1 424 LLNQTQLKLKRGYRYGLCGKNDSGKTSLMRAIA 456
                 47899*************************984 PP

  == domain 2    score: 29.0 bits;  conditional E-value: 2.1e-09
   TIGR02324 150 fsGGekqRvniaraliadrPiLLLdePtasLdaanrkvvvelikeakargaaligifhdeevrelvadrelev 222
                  sGG + ++ + ra+++   iLLLdePt  Ld  n k v++ ++++k+     i + hd +v ++v+++ l++
  MMETSP1137-20121227|7546_1 535 LSGGWRMKLALVRAMLMRADILLLDEPTNHLDPGNVKWVIDYLTSLKSVT--SIIVSHDIKVLDQVCTHVLQI 605
                 69*******************************************99755..45567**********999875 PP

  == domain 3    score: 14.4 bits;  conditional E-value: 5.9e-05
   TIGR02324  15 qqgGvklpvlkevsleveaGelvalsGksGaGkstllkslyanYlpesgrilv 67 
                 +  G   p l++v+++v+     a +G+ GaGkst++k l ++  p+ g+  v
  MMETSP1137-20121227|7546_1 668 TYPGAPKPQLTNVTVRVSLSTRAACIGANGAGKSTMIKLLTGELEPDRGSGEV 720
                 5567788999**********************************999876443 PP

  == domain 4    score: 14.4 bits;  conditional E-value: 5.7e-05
   TIGR02324 149 tfsGGekqRvniaraliadrPiLLLdePtasLdaanrkvvvelikeakargaaligifhdeev 211
                   sGG k +v +a a+     i++LdePt  Ld     +  e i+   a    ++ i h+++ 
  MMETSP1137-20121227|7546_1 889 ALSGGQKVKVVLAAAMWNTPHIVILDEPTNYLDRDSLGALAEAIH---AYDGGVVIISHNAQF 948
                 68***************9777999********9888776666554...444445555666555 PP

>> TIGR02633  xylG: D-xylose ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.8   0.0   0.00018     0.013      12      48 ..     420     456 ..     414     463 .. 0.87
   2 !   21.4   0.0   2.2e-07   1.6e-05     399     482 ..     530     611 ..     519     621 .. 0.82
   3 !   11.8   0.0   0.00018     0.013       2      51 ..     660     711 ..     659     730 .. 0.82
   4 !   19.2   0.0     1e-06   7.4e-05     398     435 ..     884     921 ..     848     956 .. 0.80

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 0.00018
   TIGR02633  12 ggvkaldnidlklraGeivslcGenGaGkstlmkvls 48 
                 g+   l++ +lkl+ G   +lcG+n +Gk++lm+ ++
  MMETSP1137-20121227|7546_1 420 GNKVLLNQTQLKLKRGYRYGLCGKNDSGKTSLMRAIA 456
                 556678999************************9876 PP

  == domain 2    score: 21.4 bits;  conditional E-value: 2.2e-07
   TIGR02633 399 lpiarlsGGnqqkavlakllllnprvlildeptrGvdvGakyeiyklinqlaqeGvaiivvsselaevlGlsdrvlvigeGklk 482
                   ++rlsGG + k  l + +l++  +l+ldept  +d G    +   ++ l  + v+ i+vs ++  +  ++  vl i+  klk
  MMETSP1137-20121227|7546_1 530 KQVGRLSGGWRMKLALVRAMLMRADILLLDEPTNHLDPGNVKWVIDYLTSL--KSVTSIIVSHDIKVLDQVCTHVLQIDGLKLK 611
                 56899********99**********************99877666666665..6788899999988777888888888766665 PP

  == domain 3    score: 11.8 bits;  conditional E-value: 0.00018
   TIGR02633   2 lemkgivkkfggvk..aldnidlklraGeivslcGenGaGkstlmkvlsgvy 51 
                 ++m +i+ ++ g     l n+++++      +  G nGaGkst++k+l+g  
  MMETSP1137-20121227|7546_1 660 MKMTNITFTYPGAPkpQLTNVTVRVSLSTRAACIGANGAGKSTMIKLLTGEL 711
                 6788999888775323699*********999*****************9854 PP

  == domain 4    score: 19.2 bits;  conditional E-value: 1e-06
   TIGR02633 398 dlpiarlsGGnqqkavlakllllnprvlildeptrGvd 435
                 +  +++lsGG++ k vla  +   p+++ildept  +d
  MMETSP1137-20121227|7546_1 884 HTRMGALSGGQKVKVVLAAAMWNTPHIVILDEPTNYLD 921
                 556899****************************9988 PP

>> TIGR02314  ABC_MetN: D-methionine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.0      0.45        33      21      51 ..     425     455 ..     413     462 .. 0.88
   2 !   29.4   0.0   1.2e-09   8.3e-08     140     220 ..     534     611 ..     512     639 .. 0.90
   3 !    9.0   0.0    0.0018      0.13      20      52 ..     676     708 ..     659     721 .. 0.79
   4 !   23.4   0.0   7.9e-08   5.7e-06     121     224 ..     868     969 ..     850     986 .. 0.77

  Alignments for each domain:
  == domain 1    score: 1.2 bits;  conditional E-value: 0.45
   TIGR02314  21 ldnvslfvpkgqifgvigasgagkstlircv 51 
                 l++ +l + +g  +g+ g   +gk++l+r +
  MMETSP1137-20121227|7546_1 425 LNQTQLKLKRGYRYGLCGKNDSGKTSLMRAI 455
                 889999***********************87 PP

  == domain 2    score: 29.4 bits;  conditional E-value: 1.2e-09
   TIGR02314 140 nlsggqkqrvaiaralasepkvllcdeatsaldpattqsilellkeinrrlgltillithemdvvkricdevavidkgeli 220
                  lsgg + ++a+ ra+     +ll de t  ldp   + +++ l  +    ++t ++++h+++v+ ++c +v  id+ +l 
  MMETSP1137-20121227|7546_1 534 RLSGGWRMKLALVRAMLMRADILLLDEPTNHLDPGNVKWVIDYLTSLK---SVTSIIVSHDIKVLDQVCTHVLQIDGLKLK 611
                 69*****************************************99886...689999****************99987774 PP

  == domain 3    score: 9.0 bits;  conditional E-value: 0.0018
   TIGR02314  20 aldnvslfvpkgqifgvigasgagkstlircvn 52 
                  l nv++ v   +    iga gagkst+i+ + 
  MMETSP1137-20121227|7546_1 676 QLTNVTVRVSLSTRAACIGANGAGKSTMIKLLT 708
                 68999************************9764 PP

  == domain 4    score: 23.4 bits;  conditional E-value: 7.9e-08
   TIGR02314 121 vtellalvglsdk..kdsypsnlsggqkqrvaiaralasepkvllcdeatsaldpattqsilellkeinrrlgltillithemdvvkricdevavidkgeliekgt 224
                 v+  l  vgl+     ++    lsggqk +v +a a+   p++++ de t  ld  +    l  l e     +  +++i+h+ + v ++c ev  +++  l  kg+
  MMETSP1137-20121227|7546_1 868 VEAHLNDVGLAPEfaTHTRMGALSGGQKVKVVLAAAMWNTPHIVILDEPTNYLDRDS----LGALAEAIHAYDGGVVIISHNAQFVDQVCPEVWHLENHTLNLKGS 969
                 4446777888766113445678********************************654....45555555667778999***************9999888877666 PP

>> TIGR03265  PhnT2: putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.0     0.036       2.6      14      52 ..     419     457 ..     411     462 .. 0.90
   2 !   28.1   0.0   3.4e-09   2.5e-07     128     196 ..     528     593 ..     509     617 .. 0.84
   3 ?    2.8   0.0      0.16        12      20      59 ..     677     716 ..     659     725 .. 0.85
   4 !   23.0   0.0   1.2e-07   8.6e-06     110     168 ..     863     923 ..     848     941 .. 0.79

  Alignments for each domain:
  == domain 1    score: 5.0 bits;  conditional E-value: 0.036
   TIGR03265  14 feaftalkdislsvkkgelvclLGPsGCGkttLLriiaG 52 
                 +++   l++ +l++k+g    l G    Gkt+L+r+ia 
  MMETSP1137-20121227|7546_1 419 YGNKVLLNQTQLKLKRGYRYGLCGKNDSGKTSLMRAIAN 457
                 7788899******************************95 PP

  == domain 2    score: 28.1 bits;  conditional E-value: 3.4e-09
   TIGR03265 128 eekyPgqlsGGqqqrvaLaralalsPglLLLDePlsaLDakvrekLreelkklqrklgvttimvthdqe 196
                  +k  g+lsGG + ++aL ra+ ++ ++LLLDeP   LD     ++++ +  l    +vt i+v hd +
  MMETSP1137-20121227|7546_1 528 LTKQVGRLSGGWRMKLALVRAMLMRADILLLDEPTNHLDPG---NVKWVIDYLTSLKSVTSIIVSHDIK 593
                 5688899********************************85...56677777777779********965 PP

  == domain 3    score: 2.8 bits;  conditional E-value: 0.16
   TIGR03265  20 lkdislsvkkgelvclLGPsGCGkttLLriiaGLekqdaG 59 
                 l+++ + v+ +   + +G  G Gk+t++++++G  ++d+G
  MMETSP1137-20121227|7546_1 677 LTNVTVRVSLSTRAACIGANGAGKSTMIKLLTGELEPDRG 716
                 77888888888888899****************7777776 PP

  == domain 4    score: 23.0 bits;  conditional E-value: 1.2e-07
   TIGR03265 110 evaerveelLelvglsgs..eekyPgqlsGGqqqrvaLaralalsPglLLLDePlsaLDak 168
                  +++ ve  L+ vgl      +   g lsGGq+ +v La a+  +P++++LDeP   LD  
  MMETSP1137-20121227|7546_1 863 LTQKFVEAHLNDVGLAPEfaTHTRMGALSGGQKVKVVLAAAMWNTPHIVILDEPTNYLDRD 923
                 556668888888888765114444689****************************999965 PP

>> TIGR01184  ntrCD: nitrate ABC transporter, ATP-binding proteins C and D
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0       9.8   7.1e+02       2      32 ..     426     456 ..     425     460 .. 0.88
   2 !   24.2   0.0   6.4e-08   4.6e-06     109     176 ..     529     593 ..     519     604 .. 0.85
   3 ?    6.9   0.0     0.012      0.89       2      41 ..     678     717 ..     677     722 .. 0.85
   4 !   26.9   0.0   9.4e-09   6.8e-07      81     155 ..     854     930 ..     842     948 .. 0.84

  Alignments for each domain:
  == domain 1    score: -2.6 bits;  conditional E-value: 9.8
   TIGR01184   2 kdvdleikkgefislighsgcgkstllnlia 32 
                 ++ +l++k+g    l g+   gk++l+  ia
  MMETSP1137-20121227|7546_1 426 NQTQLKLKRGYRYGLCGKNDSGKTSLMRAIA 456
                 678999********************99887 PP

  == domain 2    score: 24.2 bits;  conditional E-value: 6.4e-08
   TIGR01184 109 dkrpeqlsggmkqrvaiaralsirpklllldepfgaldaltreelqekllkiveearvtvlmvthdvd 176
                  k++++lsgg + ++a+ ra+ +r ++llldep   ld    + + +    ++  ++vt ++v+hd+ 
  MMETSP1137-20121227|7546_1 529 TKQVGRLSGGWRMKLALVRAMLMRADILLLDEPTNHLDPGNVKWVIDY---LTSLKSVTSIIVSHDIK 593
                 6999*******************************9997555555554...5566889********95 PP

  == domain 3    score: 6.9 bits;  conditional E-value: 0.012
   TIGR01184   2 kdvdleikkgefislighsgcgkstllnliaglekptsga 41 
                  +v ++++     + ig  g gkst++ l++g  +p  g+
  MMETSP1137-20121227|7546_1 678 TNVTVRVSLSTRAACIGANGAGKSTMIKLLTGELEPDRGS 717
                 567777777778899*****************99998886 PP

  == domain 4    score: 26.9 bits;  conditional E-value: 9.4e-09
   TIGR01184  81 avlrdlskserreiveehielvglr..eaadkrpeqlsggmkqrvaiaralsirpklllldepfgaldaltreelqe 155
                 a  ++l++   ++ ve h++ vgl    a++ r++ lsgg k +v +a a+   p++++ldep   ld  + + l e
  MMETSP1137-20121227|7546_1 854 ALATQLQRPLTQKFVEAHLNDVGLApeFATHTRMGALSGGQKVKVVLAAAMWNTPHIVILDEPTNYLDRDSLGALAE 930
                 556788899999************632699**********************************9999766555555 PP

>> TIGR02770  nickel_nikD: nickel import ATP-binding protein NikD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.0      0.14        10       3      34 ..     426     457 ..     424     469 .. 0.85
   2 !   29.2   0.0   1.6e-09   1.2e-07     119     197 ..     528     603 ..     492     612 .. 0.80
   3 ?    1.1   0.0      0.63        46       6      39 ..     681     714 ..     677     723 .. 0.76
   4 !   23.0   0.0   1.3e-07   9.4e-06     100     201 ..     865     961 ..     826     983 .. 0.84

  Alignments for each domain:
  == domain 1    score: 3.2 bits;  conditional E-value: 0.14
   TIGR02770   3 qdvnlslkrgkvlalvGesGsGksltalailg 34 
                 ++ +l+lkrg   +l G+  sGk+    ai +
  MMETSP1137-20121227|7546_1 426 NQTQLKLKRGYRYGLCGKNDSGKTSLMRAIAN 457
                 6779*******************987777755 PP

  == domain 2    score: 29.2 bits;  conditional E-value: 1.6e-09
   TIGR02770 119 lkkypfelsGGmlqRvmialallleaplliaDePttdlDvvvqaevLklleelrekrglgillithDlgvvaeladeva 197
                 l+k   +lsGG   ++ +  a+l++a +l+ DePt  lD  + + v+++l++l++ +    ++++hD++v+ ++  +v+
  MMETSP1137-20121227|7546_1 528 LTKQVGRLSGGWRMKLALVRAMLMRADILLLDEPTNHLDPGNVKWVIDYLTSLKSVT---SIIVSHDIKVLDQVCTHVL 603
                 45555689***9777777779******************************998754...4789*********999886 PP

  == domain 3    score: 1.1 bits;  conditional E-value: 0.63
   TIGR02770   6 nlslkrgkvlalvGesGsGksltalailglldke 39 
                  + +      a +G+ G+Gks+  + + g l+++
  MMETSP1137-20121227|7546_1 681 TVRVSLSTRAACIGANGAGKSTMIKLLTGELEPD 714
                 555566666799*********9998888877765 PP

  == domain 4    score: 23.0 bits;  conditional E-value: 1.3e-07
   TIGR02770 100 kelivealeavgLeeaeevlkkypfelsGGmlqRvmialallleaplliaDePttdlDvvvqaevLklleelrekrglgillithDlgvvaeladevavmek 201
                 ++ + + l++vgL+ +e   ++    lsGG   +v++a a+   + ++i DePt  lD ++    L  l e  +  + g+++i+h+ + v ++  ev  +e+
  MMETSP1137-20121227|7546_1 865 QKFVEAHLNDVGLA-PEFATHTRMGALSGGQKVKVVLAAAMWNTPHIVILDEPTNYLDRDS----LGALAEAIHAYDGGVVIISHNAQFVDQVCPEVWHLEN 961
                 44455678888888.77777888889********************************876....88899999999***************99999977665 PP

>> TIGR00955  3a01204: pigment precursor permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.0   0.0    0.0054      0.39      30      79 ..     409     463 ..     385     479 .. 0.75
   2 !   20.3   0.0   5.3e-07   3.8e-05     163     220 ..     531     588 ..     524     603 .. 0.90
   3 ?    6.0   0.0     0.011      0.81      38      76 ..     674     712 ..     637     721 .. 0.76
   4 !   22.7   0.0   9.8e-08   7.1e-06     138     200 ..     865     923 ..     853     943 .. 0.83

  Alignments for each domain:
  == domain 1    score: 7.0 bits;  conditional E-value: 0.0054
   TIGR00955  30 alarkk.....pekellknvsGvaksGellAvlGsSGaGKtTLlnalafrsekgl 79 
                 +l+ +      ++k ll++   ++k G    + G   +GKt L+ a+a+++ +g 
  MMETSP1137-20121227|7546_1 409 QLCDCTfslayGNKVLLNQTQLKLKRGYRYGLCGKNDSGKTSLMRAIANQQVEGF 463
                 2222223344599************************************998876 PP

  == domain 2    score: 20.3 bits;  conditional E-value: 5.3e-07
   TIGR00955 163 rvkglSgGerkRlalaselltdPilLfcDEPTsGLDsfsaasvvkvLkklaqkgktvi 220
                 +v  lSgG r +lal   +l    +L++DEPT  LD    + v+  L +l +  ++++
  MMETSP1137-20121227|7546_1 531 QVGRLSGGWRMKLALVRAMLMRADILLLDEPTNHLDPGNVKWVIDYLTSLKSVTSIIV 588
                 4556*********************************************988777664 PP

  == domain 3    score: 6.0 bits;  conditional E-value: 0.011
   TIGR00955  38 kellknvsGvaksGellAvlGsSGaGKtTLlnalafrse 76 
                 k  l nv+  +   +  A +G+ GaGK+T+++ l+   e
  MMETSP1137-20121227|7546_1 674 KPQLTNVTVRVSLSTRAACIGANGAGKSTMIKLLTGELE 712
                 5566677777777777899*************9987665 PP

  == domain 4    score: 22.7 bits;  conditional E-value: 9.8e-08
   TIGR00955 138 rerveevleelgLrk..cadtrigvpgrvkglSgGerkRlalaselltdPilLfcDEPTsGLDsf 200
                 ++ ve+ l+++gL    + +tr+g      +lSgG++ ++ la  + + P+++++DEPT  LD  
  MMETSP1137-20121227|7546_1 865 QKFVEAHLNDVGLAPefATHTRMG------ALSGGQKVKVVLAAAMWNTPHIVILDEPTNYLDRD 923
                 677899999999976336777777......7*******************************964 PP

>> TIGR03258  PhnT: 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.0     5e-05    0.0036      14      56 ..     415     457 ..     410     479 .. 0.91
   2 !   21.7   0.0   2.7e-07   1.9e-05     137     199 ..     533     591 ..     519     613 .. 0.81
   3 ?    4.0   0.0     0.061       4.4      28      63 ..     681     716 ..     655     722 .. 0.82
   4 !   16.5   0.0   9.7e-06    0.0007     115     179 ..     864     930 ..     844     943 .. 0.76

  Alignments for each domain:
  == domain 1    score: 14.2 bits;  conditional E-value: 5e-05
   TIGR03258  14 lrvaygarvvlddlsleieaGellallGksGsGkttllravaG 56 
                 +++ayg +v+l++  l+++ G    l Gk  sGkt+l+ra+a 
  MMETSP1137-20121227|7546_1 415 FSLAYGNKVLLNQTQLKLKRGYRYGLCGKNDSGKTSLMRAIAN 457
                 5789*************************************95 PP

  == domain 2    score: 21.7 bits;  conditional E-value: 2.7e-07
   TIGR03258 137 aqlsGGqqqrvalaralvvrpdvllldeplsaldaqlrasvveelkalhrelpeltvlyvthd 199
                  +lsGG + ++al ra+ +r d+llldep   ld    + v + l +    l  +t ++v+hd
  MMETSP1137-20121227|7546_1 533 GRLSGGWRMKLALVRAMLMRADILLLDEPTNHLDPGNVKWVIDYLTS----LKSVTSIIVSHD 591
                 579*******************************8654455554444....556777777777 PP

  == domain 3    score: 4.0 bits;  conditional E-value: 0.061
   TIGR03258  28 sleieaGellallGksGsGkttllravaGfvkadGG 63 
                 ++ +      a +G  G+Gk+t++++++G +++d G
  MMETSP1137-20121227|7546_1 681 TVRVSLSTRAACIGANGAGKSTMIKLLTGELEPDRG 716
                 555555666799*****************9999976 PP

  == domain 4    score: 16.5 bits;  conditional E-value: 9.7e-06
   TIGR03258 115 iaervadalklvqlsd..aaarlpaqlsGGqqqrvalaralvvrpdvllldeplsaldaqlrasvve 179
                  ++ v   l  v+l+   a++     lsGGq+ +v la a+   p++++ldep   ld +   ++ e
  MMETSP1137-20121227|7546_1 864 TQKFVEAHLNDVGLAPefATHTRMGALSGGQKVKVVLAAAMWNTPHIVILDEPTNYLDRDSLGALAE 930
                 55566666777888642134455678*******************************9776555555 PP

>> TIGR01186  proV: glycine betaine/L-proline transport ATP binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.0     0.087       6.3       4      39 ..     420     455 ..     418     467 .. 0.89
   2 !   21.6   0.0     3e-07   2.1e-05     128     190 ..     533     592 ..     488     605 .. 0.84
   3 !    9.2   0.0    0.0018      0.13      23      48 ..     691     716 ..     676     721 .. 0.87
   4 !   17.2   0.0   6.6e-06   0.00048     113     168 ..     871     925 ..     848     952 .. 0.78

  Alignments for each domain:
  == domain 1    score: 3.6 bits;  conditional E-value: 0.087
   TIGR01186   4 GlklgvndvdleieeGeiiviiGlsGsGkstlvrll 39 
                 G k+ +n+ +l+++ G  + + G   sGk++l+r +
  MMETSP1137-20121227|7546_1 420 GNKVLLNQTQLKLKRGYRYGLCGKNDSGKTSLMRAI 455
                 889999***************************987 PP

  == domain 2    score: 21.6 bits;  conditional E-value: 3e-07
   TIGR01186 128 delsGGmqqrvGlaralaaePdlllmdeafsaldPlirdelqdelvklqkklqktivfithdl 190
                  +lsGG + ++ l+ra+ +  d+ll+de+   ldP   + + d l  l++    t + ++hd+
  MMETSP1137-20121227|7546_1 533 GRLSGGWRMKLALVRAMLMRADILLLDEPTNHLDPGNVKWVIDYLTSLKS---VTSIIVSHDI 592
                 579********************************999999999999976...4778899997 PP

  == domain 3    score: 9.2 bits;  conditional E-value: 0.0018
   TIGR01186  23 viiGlsGsGkstlvrllnrliePtaG 48 
                   iG  G+Gkst+++ll   +eP +G
  MMETSP1137-20121227|7546_1 691 ACIGANGAGKSTMIKLLTGELEPDRG 716
                 579********************998 PP

  == domain 4    score: 17.2 bits;  conditional E-value: 6.6e-06
   TIGR01186 113 alklvdl.eeye.dryPdelsGGmqqrvGlaralaaePdlllmdeafsaldPlirdel 168
                  l  v+l +e++ ++    lsGG++ +v la a+ + P ++++de+   ld   rd+l
  MMETSP1137-20121227|7546_1 871 HLNDVGLaPEFAtHTRMGALSGGQKVKVVLAAAMWNTPHIVILDEPTNYLD---RDSL 925
                 5899999999963778899***************************99998...4554 PP

>> TIGR01192  chvA: glucan exporter ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.4   0.0   5.9e-08   4.3e-06     468     534 ..     531     596 ..     513     623 .. 0.80
   2 !   16.7   0.0   6.6e-06   0.00047     291     391 ..     612     717 ..     604     721 .. 0.76
   3 !   13.0   0.0   8.9e-05    0.0064     468     558 ..     886     975 ..     863     993 .. 0.81

  Alignments for each domain:
  == domain 1    score: 23.4 bits;  conditional E-value: 5.9e-08
   TIGR01192 468 rgnrlsggerqrlaiarailknapilvldeatsaldvetearvkdaidalr..knrttfiiahrlstvr 534
                 +  rlsgg r +la+ ra+l  a il+lde t  ld      vk  id l+  k  t++i++h +  + 
  MMETSP1137-20121227|7546_1 531 QVGRLSGGWRMKLALVRAMLMRADILLLDEPTNHLDPGN---VKWVIDYLTslKSVTSIIVSHDIKVLD 596
                 5679********************************865...666666664226779999999887665 PP

  == domain 2    score: 16.7 bits;  conditional E-value: 6.6e-06
   TIGR01192 291 qlkafvtqivear.akledffdledsvkere..epadarelknv.kgavefrdisfefans.sqgvrdvsfeakagqtvaivgptgagkttlinllqrvydpksgq 391
                 q k+ +t++ ++    l  +f+l+ + +     +p++++ +++  k  +++ +i+f ++ + +  + +v+ ++      a +g  gagk+t+i ll    +p+ g 
  MMETSP1137-20121227|7546_1 612 QYKGNLTHVANTFcPELMSYFELKATKFTMRfpQPGNLEGVSSKgKHIMKMTNITFTYPGApKPQLTNVTVRVSLSTRAACIGANGAGKSTMIKLLTGELEPDRGS 717
                 555555555554314688889988776655422677877776531456799*******987255799**********************************99985 PP

  == domain 3    score: 13.0 bits;  conditional E-value: 8.9e-05
   TIGR01192 468 rgnrlsggerqrlaiarailknapilvldeatsaldvetearvkdaidalrknrttfiiahrlstvrea.dlvlfldqgrliekgsfdeliq 558
                 r   lsgg++ ++ +a a+     i++lde t  ld ++   + +ai a   +    ii+h    v +    v  l++  l  kgs+d l  
  MMETSP1137-20121227|7546_1 886 RMGALSGGQKVKVVLAAAMWNTPHIVILDEPTNYLDRDSLGALAEAIHAY--DGGVVIISHNAQFVDQVcPEVWHLENHTLNLKGSYDWLES 975
                 6678**************999999****************9999*99986..6678899998888866414566777777777777776655 PP

>> TIGR01187  potA: polyamine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.0   0.0   1.1e-07   7.9e-06      96     160 ..     530     591 ..     523     601 .. 0.85
   2 ?    6.6   0.0      0.01      0.74       2      26 ..     693     717 ..     692     725 .. 0.93
   3 !   22.4   0.0   1.7e-07   1.2e-05      81     133 ..     868     922 ..     856     934 .. 0.81

  Alignments for each domain:
  == domain 1    score: 23.0 bits;  conditional E-value: 1.1e-07
   TIGR01187  96 rkpsqlsGGqrqrvalaravvkkPkiLLlDeplsaLDkkLrdqmqlelkalqeklGitvvlvthD 160
                 +++ +lsGG r ++al ra+  + +iLLlDep   LD    + +   l +l+    +t ++v hD
  MMETSP1137-20121227|7546_1 530 KQVGRLSGGWRMKLALVRAMLMRADILLLDEPTNHLDPGNVKWVIDYLTSLK---SVTSIIVSHD 591
                 56678********************************876666665566555...6899999998 PP

  == domain 2    score: 6.6 bits;  conditional E-value: 0.01
   TIGR01187   2 LGpsGsGkttlLrllaGleeldsGk 26 
                 +G+ G+Gk+t+++ll G  e+d G+
  MMETSP1137-20121227|7546_1 693 IGANGAGKSTMIKLLTGELEPDRGS 717
                 69*******************9986 PP

  == domain 3    score: 22.4 bits;  conditional E-value: 1.7e-07
   TIGR01187  81 vkeaLelvqle.efa.krkpsqlsGGqrqrvalaravvkkPkiLLlDeplsaLDk 133
                 v++ L+ v l  efa + ++  lsGGq+ +v la a+ + P+i++lDep   LD+
  MMETSP1137-20121227|7546_1 868 VEAHLNDVGLApEFAtHTRMGALSGGQKVKVVLAAAMWNTPHIVILDEPTNYLDR 922
                 5556666666434551467889*******************************98 PP

>> TIGR01271  CFTR_protein: cystic fibrosis transmembrane conductor regulator (CFTR)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.0     0.073       5.3     427     472 ..     408     455 ..     383     462 .. 0.62
   2 !   28.4   0.0   8.5e-10   6.1e-08    1354    1433 ..     535     614 ..     527     625 .. 0.89
   3 !   10.1   0.0   0.00028      0.02     439     496 ..     674     735 ..     647     775 .. 0.81
   4 !    6.7   0.0    0.0029      0.21     549    1386 ..     890     922 ..     880    1016 .. 0.74

  Alignments for each domain:
  == domain 1    score: 2.1 bits;  conditional E-value: 0.073
   TIGR01271 427 dglffsnlsl.yvtpvl.knislklekgqllavagstgsgkssllmmi 472
                 + l  + +sl y+  vl  + +lkl++g    ++g   sgk+sl+  i
  MMETSP1137-20121227|7546_1 408 EQLCDCTFSLaYGNKVLlNQTQLKLKRGYRYGLCGKNDSGKTSLMRAI 455
                 445555566534555541556788888888888888888888877655 PP

  == domain 2    score: 28.4 bits;  conditional E-value: 8.5e-10
   TIGR01271 1354 lsnghkqlmclarsilskakillldepsafldpvtlqiirktlkqafsnctvilsehrvealle.cqqflviegssvkqyd 1433
                  ls g +  + l r++l +a illldep+ +ldp  ++ +   l  ++   t i+  h ++ l + c + l i+g ++kqy 
  MMETSP1137-20121227|7546_1  535 LSGGWRMKLALVRAMLMRADILLLDEPTNHLDPGNVKWVIDYLT-SLKSVTSIIVSHDIKVLDQvCTHVLQIDGLKLKQYK 614 
                  78999999**************************9999988875.78889999999****996559**************7 PP

  == domain 3    score: 10.1 bits;  conditional E-value: 0.00028
   TIGR01271 439 tpvlknislklekgqllavagstgsgkssllmmilgelepsegk...ikh.sgrisfspqvs 496
                  p l n+++++      a  g+ g+gks+++ ++ gelep  g     +h   r+++ +q +
  MMETSP1137-20121227|7546_1 674 KPQLTNVTVRVSLSTRAACIGANGAGKSTMIKLLTGELEPDRGSgevWRHpNCRVAYVAQHA 735
                 58899999999999999***********************8774222466357888888866 PP

  == domain 4    score: 6.7 bits;  conditional E-value: 0.0029
   TIGR01271  549 lsggqrarislaravykdadlylldspfsyldvvtekeifesclckllanktrilvtsklehlkkadkilllhegscyfygtfselqakkpdfsskllgleafdslsaerrnsiltetlrrvsvesdaalvsysetkkqsfkqpppefaekrksslilnpiasarkfslvqkapskaqateiedavselserklslvpedeqgeeslprsnvfksglqlqarrrqsvlallthssrgenkreklrasvrkvslisqanelaseldiysrrlskdssleiseeineedlkecfadeeesvnatttwntylryittnrnlvfvlililviflaevaaslvglflisdlasatnsdkqdsanasspdsskaviitstsayyilyiyvgvadsllalgflrglplvhtlltvskrlhkkmlhsvlqapmavlntlkagrilnrfskdiaiiddllpltlfdliqlllivlgaiavvsvlqpyilvaaipvavifivlrayflrtsqqlkqlesearspifshliislkglwtvrafgrqsyfetlfhkalnlhtanwflylstlrwfqlridiifvlffiavvfiaiatndegegevgiiltlamnilstlqwavnssidvdglmrsvsrvfkfidlpqeeskpkkstkkyqlskvlvienkhvkkiwpsggqmtvkdltakyteagravlqdlsfsveagqrvgllgrtgsgkstllsallrllstegeiqidgvswnsvtlqkwrkafgvipqkvfilsgtfrknldpyeqysdeeiwkvaeevglksvieqfpdkldfvlvdggyvlsnghkqlmclarsilskakillldepsafldp 1386
                  lsggq+ ++ la a++    + +ld p +yld                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      
  MMETSP1137-20121227|7546_1  890 LSGGQKVKVVLAAAMWNTPHIVILDEPTNYLD-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------R 922 
                  56666666666666666666666666666665.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................4 PP

>> TIGR03415  ABC_choXWV_ATP: choline ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   0.0     0.021       1.5      35      71 ..     420     456 ..     413     461 .. 0.90
   2 !   31.7   0.0   2.4e-10   1.7e-08     159     235 ..     529     602 ..     522     622 .. 0.86
   3 ?   -2.3   0.0       4.8   3.5e+02      53      79 ..     690     716 ..     677     727 .. 0.72
   4 !   11.8   0.0   0.00025     0.018     142     196 ..     865     921 ..     855     944 .. 0.87

  Alignments for each domain:
  == domain 1    score: 5.5 bits;  conditional E-value: 0.021
   TIGR03415  35 GlvlgvadasldveeGeilvlmGlsGsGkssllravn 71 
                 G+ +  ++++l++++G    l G   sGk+sl+ra+ 
  MMETSP1137-20121227|7546_1 420 GNKVLLNQTQLKLKRGYRYGLCGKNDSGKTSLMRAIA 456
                 77788999***************************96 PP

  == domain 2    score: 31.7 bits;  conditional E-value: 2.4e-10
   TIGR03415 159 dkkvgelsGGmqqrvGlarafateadillmdePfsaldPliraklqdellelqkklkktivfvshdldealklGnri 235
                 +k+vg lsGG + ++ l ra+ + adill+deP   ldP   + + d l +l++    t + vshd+    ++ +++
  MMETSP1137-20121227|7546_1 529 TKQVGRLSGGWRMKLALVRAMLMRADILLLDEPTNHLDPGNVKWVIDYLTSLKS---VTSIIVSHDIKVLDQVCTHV 602
                 58899***********************************999999*9999986...58899****97665665555 PP

  == domain 3    score: -2.3 bits;  conditional E-value: 4.8
   TIGR03415  53 lvlmGlsGsGkssllravnglnpvsrG 79 
                 +  +G  G+Gks++++ + g     rG
  MMETSP1137-20121227|7546_1 690 AACIGANGAGKSTMIKLLTGELEPDRG 716
                 5668999*******9988775444555 PP

  == domain 4    score: 11.8 bits;  conditional E-value: 0.00025
   TIGR03415 142 rkrveeqlelvgla.eWa.dkkvgelsGGmqqrvGlarafateadillmdePfsald 196
                 +k ve++l+ vgla e+a ++++g lsGG + +v la a+     i+++deP   ld
  MMETSP1137-20121227|7546_1 865 QKFVEAHLNDVGLApEFAtHTRMGALSGGQKVKVVLAAAMWNTPHIVILDEPTNYLD 921
                 567888999999974454156899****************************99888 PP

>> TIGR00957  MRP_assoc_pro: multi drug resistance-associated protein (MRP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1   0.0   1.3e-07   9.5e-06     634     837 ..     405     607 ..     389     632 .. 0.66
   2 !   17.0   0.0   2.2e-06   0.00016     630     710 ..     653     737 ..     644     747 .. 0.82
   3 !    6.8   0.0    0.0027       0.2     760     793 ..     889     922 ..     854    1034 .. 0.84

  Alignments for each domain:
  == domain 1    score: 21.1 bits;  conditional E-value: 1.3e-07
   TIGR00957 634 gnsitvknatftwardepptlngltlsipegalvavvgqvgcgkssllsallae.mdkvegkvalkgsvayvpqqawiqndslrenilfgkaleekyykav......leacalladleilpsgdrteigekgvnlsggqkqrvslaravysdadiyllddplsavdahvakhifekvigpkgllknktrilvthgisylpqvdviivlsdg 837
                   +  + ++tf+ a ++   ln  +l++ +g    + g+   gk+sl+ a+  + ++      +l+        q  + +  + + ++  + l+             l       d  + p+    ++g     lsgg + +++l ra+   adi lld+p   +d    k +++ +      lk+ t i+v+h i  l qv   ++  dg
  MMETSP1137-20121227|7546_1 405 DDAEQLCDCTFSLAYGNKVLLNQTQLKLKRGYRYGLCGKNDSGKTSLMRAIANQqVEGFPPATELRTMFVETDVQGELSEMPVIDFVVKHEGLKAYGITYEmareklLSVGFAEDDSGMAPASLTKQVG----RLSGGWRMKLALVRAMLMRADILLLDEPTNHLDPGNVKWVIDYL----TSLKSVTSIIVSHDIKVLDQVCTHVLQIDG 607
                 555566677777777777777777777777777777777777777777776542133333345555555555555555555555555444444432222220000002222222344455554444444....69****************************99999999877766....569999**************9876665555 PP

  == domain 2    score: 17.0 bits;  conditional E-value: 2.2e-06
   TIGR00957 630 kdgegnsitvknatftwardepptlngltlsipegalvavvgqvgcgkssllsallaemd..kvegkv..alkgsvayvpqqawi 710
                 ++ + + + + n tft+     p l ++t+++   +  a +g  g gks+++  l +e++  +  g+v  + +  vayv q a+ 
  MMETSP1137-20121227|7546_1 653 SSKGKHIMKMTNITFTYPGAPKPQLTNVTVRVSLSTRAACIGANGAGKSTMIKLLTGELEpdRGSGEVwrHPNCRVAYVAQHAFH 737
                 45545677899**********************************************997224555663345789******9974 PP

  == domain 3    score: 6.8 bits;  conditional E-value: 0.0027
   TIGR00957 760 nlsggqkqrvslaravysdadiyllddplsavda 793
                  lsggqk +v la a++    i +ld+p   +d 
  MMETSP1137-20121227|7546_1 889 ALSGGQKVKVVLAAAMWNTPHIVILDEPTNYLDR 922
                 5999999999999999999999999999887775 PP

>> TIGR01257  rim_protein: rim ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.0   8.9e-06   0.00064    1058    1121 ..     531     593 ..     482     638 .. 0.82
   2 !   13.8   0.0   1.4e-05     0.001    1935    1990 ..     657     712 ..     649     723 .. 0.90
   3 !   14.0   0.0   1.2e-05   0.00088    1043    2135 ..     869     951 ..     854     983 .. 0.57

  Alignments for each domain:
  == domain 1    score: 14.4 bits;  conditional E-value: 8.9e-06
   TIGR01257 1058 eaqdlsgglqrklsvaiafvgdakvvvldeptsgvdpysrrsiwdlllkyrsgrtiimsthhmd 1121
                  +   lsgg + kl++  a++  a +++ldept  +dp   + + d l   +s  +ii+s h + 
  MMETSP1137-20121227|7546_1  531 QVGRLSGGWRMKLALVRAMLMRADILLLDEPTNHLDPGNVKWVIDYLTSLKSVTSIIVS-HDIK 593 
                  45578999999999999999999999999999999999999999999999999888887.4444 PP

  == domain 2    score: 13.8 bits;  conditional E-value: 1.4e-05
   TIGR01257 1935 tdilrlneltkvysgtsspavdrlcvgvrpgecfgllgvngagktttfkmltgdtt 1990
                    i+++ ++t  y+g+  p +  + v v        +g ngagk+t +k+ltg+  
  MMETSP1137-20121227|7546_1  657 KHIMKMTNITFTYPGAPKPQLTNVTVRVSLSTRAACIGANGAGKSTMIKLLTGELE 712 
                  4799*************************************************865 PP

  == domain 3    score: 14.0 bits;  conditional E-value: 1.2e-05
   TIGR01257 1043 eamledtglhhkrneeaq..dlsgglqrklsvaiafvgdakvvvldeptsgvdpysrrsiwdlllkyrsgrtiimsthhmdeadllgdriaiisqgrlycsgtplflkncfgtglyltlvrkmkniqsqrkgsegtcscaskgfstrcparvdeiteeqvldgdvnelldlvyhhvpeaklvecigqelifllpnknfkqrayaslfreleetladlglssfgisdtpleeiflkvtedadsgslfaggaqqkrenvnlrhpcsgpsekagqtaqasnssspgepaahpegqpspepeapgsrlntgarlilqhvqallvkrfqhtirsrkdflaqivlpatfvflalmlsiiippfgeypaltlhpwlygqqytffsmdepdseklevladvllnkpgfgnrclkeewlpeypcgnstswktpsvspnithllqkqkwtaakpspscrcstrekltmlpecpegagglpppqriqrsteilqdltdrnisdflvktypalirsslkskfwvneqryggisiggklpavpitgealvgflsdlgqlmnvsggpvtreaskelldflkhletednikvwfnnkgwhalvsflnvahnailraslpkdrdpeeygitvisqplnltkeqlseitvlttsvdavvaicvifamsfvpasfvlyliqervnkakhlqfisgvspttywltnflwdimnyavsaglvvgifigfqkkaytssenlpalvallllygwavipmmypasflfdvpstayvalscanlfiginssaitfvlelfennrtllrlnallrkllivfphfclgrglidlalsqavtdvyaqfgeeysanpfqwdligknlvamavegvvyflltlliqrhfflsrwiaepakepivdedddvaeerqriisggnktdilrlneltkvysgtsspavdrlcvgvrpgecfgllgvngagktttfkmltgdttvtsgdatvagksiltnisdvhqnmgycpqfdaiddlltgrehlylyarlrgvpaeeiekvanwsikslglslyadrlagtysggnkrklstaialigcpplvlldepttgmdpqarrmlwntivsiiregravvltshsmeecea 2135
                  ea l+d gl       ++   lsgg + k+ +a a+    ++v+ldept  +d  s  ++ + +  y  g                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    vv+ sh  + ++ 
  MMETSP1137-20121227|7546_1  869 EAHLNDVGLAPEFATHTRmgALSGGQKVKVVLAAAMWNTPHIVILDEPTNYLDRDSLGALAEAIHAYDGG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------VVIISHNAQFVDQ 951 
                  5555555554433333221145555555555555555555555555555555555555555555555544....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................5555555544444 PP

>> TIGR00954  3a01203: peroxysomal long chain fatty acyl transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.8   0.0    0.0057      0.41     465     500 ..     421     456 ..     411     459 .. 0.94
   2 ?    2.2   0.0      0.15        10     583     654 ..     534     607 ..     522     613 .. 0.77
   3 !   10.2   0.0   0.00052     0.038     450     526 ..     657     736 ..     634     743 .. 0.84
   4 !   13.5   0.0   5.3e-05    0.0038     581     641 ..     887     947 ..     870     973 .. 0.81

  Alignments for each domain:
  == domain 1    score: 6.8 bits;  conditional E-value: 0.0057
   TIGR00954 465 gdvlieeLsfevksGnhlLiiGPnGcGKsslfRilg 500
                 ++vl+++ ++++k G    ++G n  GK sl+R ++
  MMETSP1137-20121227|7546_1 421 NKVLLNQTQLKLKRGYRYGLCGKNDSGKTSLMRAIA 456
                 789******************************997 PP

  == domain 2    score: 2.2 bits;  conditional E-value: 0.15
   TIGR00954 583 vLsgGekqRiamARlfyHkPkfavLDEctsAvsv.dvEdklyelakevgitllsvshr.ksLwkyHeylLkldg 654
                  LsgG + ++a+ R +  +    +LDE t+ + + +v   +  l+  + +t + vsh  k L +  +++L++dg
  MMETSP1137-20121227|7546_1 534 RLSGGWRMKLALVRAMLMRADILLLDEPTNHLDPgNVKWVIDYLTSLKSVTSIIVSHDiKVLDQVCTHVLQIDG 607
                 69****************************98872344444444445567777777753566677777777776 PP

  == domain 3    score: 10.2 bits;  conditional E-value: 0.00052
   TIGR00954 450 dngikfeniplvtP.egdvlieeLsfevksGnhlLiiGPnGcGKsslfRil.gelWPvyg.glltkpeegklFyvPqrPY 526
                 ++++k+ ni    P + +  + +++++v   +    iG nG GKs + ++l gel P +g g     +++++ yv q+ +
  MMETSP1137-20121227|7546_1 657 KHIMKMTNITFTYPgAPKPQLTNVTVRVSLSTRAACIGANGAGKSTMIKLLtGELEPDRGsGEVWRHPNCRVAYVAQHAF 736
                 55678888888888545567888999999999999**************98689*****9899999*********99865 PP

  == domain 4    score: 13.5 bits;  conditional E-value: 5.3e-05
   TIGR00954 581 kdvLsgGekqRiamARlfyHkPkfavLDEctsAvsvdvEdklyelakevgitllsvshrks 641
                 +  LsgG+k ++ +A  ++  P+ ++LDE t+ +  d  ++l e+++ ++  ++ +sh   
  MMETSP1137-20121227|7546_1 887 MGALSGGQKVKVVLAAAMWNTPHIVILDEPTNYLDRDSLGALAEAIHAYDGGVVIISHNAQ 947
                 668***********************************9*999999999999999998743 PP

>> TIGR00630  uvra: excinuclease ABC subunit A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.1   1.5e-05    0.0011     476     651 ..     523     705 ..     520     712 .. 0.73
   2 !    8.8   0.0    0.0012     0.086     812     894 ..     872     949 ..     841     953 .. 0.79

  Alignments for each domain:
  == domain 1    score: 15.1 bits;  conditional E-value: 1.5e-05
   TIGR00630 476 LdYLsleraaetlsGGeaqrirlatqiGsgLvGvlYvlDePsiGLhqrDnerLietlkrlrdlGntlivvehDeetire.aDyvvdi.GPgaGehGGev..vasgsleellkkkesltgqYls...gkkkievPkerrk..aegk..vltlkgakennlkdidvsiplglltvitGvsgsGkstLin 651
                 +   sl +++  lsGG + +++l       +   + +lDeP   L + + + +i+ l++l+    t i+v hD +++ +   +v++i G +  ++ G++  va+    el++  e  ++++     +  ++e  +++ k   + +  ++t  ga +  l +++v++ l +  +  G  g+Gkst+i+
  MMETSP1137-20121227|7546_1 523 MAPASLTKQVGRLSGGWRMKLALVR--AMLMRADILLLDEPTNHLDPGNVKWVIDYLTSLKSV--TSIIVSHDIKVLDQvCTHVLQIdGLKLKQYKGNLthVANTFCPELMSYFELKATKFTMrfpQPGNLEGVSSKGKhiMKMTniTFTYPGAPKPQLTNVTVRVSLSTRAACIGANGAGKSTMIK 705
                 5556788999999**9765555544..4455667899***********************986..8899*******9762689999978899999999844667777888886655544443211133344433322220022221355667999*****************************996 PP

  == domain 2    score: 8.8 bits;  conditional E-value: 0.0012
   TIGR00630 812 lvdvGLg.YiklGqpattLsGGeaqrvkLakeLskrstgktlyilDePttGLhfdDikkLlevlqrlvdkGntvvviehnldvi 894
                 l dvGL         + +LsGG   +v La+ +    +   + ilDePt  L  d +  L e ++        vv+i hn + +
  MMETSP1137-20121227|7546_1 872 LNDVGLApEFATHTRMGALSGGQKVKVVLAAAMW---NTPHIVILDEPTNYLDRDSLGALAEAIHAY---DGGVVIISHNAQFV 949
                 556666422334445668****999998988775...457799***********9999999998864...34599*****8776 PP

>> TIGR01194  cyc_pep_trnsptr: cyclic peptide transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.8   0.0   0.00038     0.028     469     533 ..     534     595 ..     518     611 .. 0.85
   2 !    9.2   0.0    0.0012     0.085     364     396 ..     684     716 ..     654     721 .. 0.80
   3 ?   -0.7   0.0       1.2        86     464     497 ..     881     917 ..     838     949 .. 0.75

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 0.00038
   TIGR01194 469 dlstGqrkrlalvnayleerpvllldewaadqdpafkrvfyeellpdlkrrGktilvishddryf 533
                  ls G r +lalv a l    +lllde +   dp   +    + l  lk    t +++shd + +
  MMETSP1137-20121227|7546_1 534 RLSGGWRMKLALVRAMLMRADILLLDEPTNHLDPGNVKWVI-DYLTSLKS--VTSIIVSHDIKVL 595
                 6999******************************9877654.67788885..688999**97654 PP

  == domain 2    score: 9.2 bits;  conditional E-value: 0.0012
   TIGR01194 364 iasGelvyivGenGcGkstliklllGlyipqeG 396
                 ++       +G nG Gkst+ikll G   p  G
  MMETSP1137-20121227|7546_1 684 VSLSTRAACIGANGAGKSTMIKLLTGELEPDRG 716
                 5555555679****************9999877 PP

  == domain 3    score: -0.7 bits;  conditional E-value: 1.2
   TIGR01194 464 ysttt...dlstGqrkrlalvnayleerpvllldewa 497
                 ++t t   +ls Gq+ ++ l +a  +   +++lde +
  MMETSP1137-20121227|7546_1 881 FATHTrmgALSGGQKVKVVLAAAMWNTPHIVILDEPT 917
                 4444433389*************999999*****965 PP

>> TIGR02323  CP_lyasePhnK: phosphonate C-P lyase system protein PhnK
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.0      0.16        11      10      50 ..     416     458 ..     410     477 .. 0.84
   2 ?    6.2   0.0      0.02       1.4     141     205 ..     534     599 ..     518     618 .. 0.79
   3 ?    6.9   0.0     0.011      0.82      31      57 ..     691     717 ..     659     732 .. 0.87
   4 ?    2.3   0.0      0.31        22     138     171 ..     886     920 ..     869     945 .. 0.88

  Alignments for each domain:
  == domain 1    score: 3.2 bits;  conditional E-value: 0.16
   TIGR02323  10 sksygskkgcr.vsf.lypGevlgivGesGsGkstllkalaar 50 
                 s  yg+k+ ++  ++ l  G   g+ G+  sGk++l+ a+a++
  MMETSP1137-20121227|7546_1 416 SLAYGNKVLLNqTQLkLKRGYRYGLCGKNDSGKTSLMRAIANQ 458
                 56788888777556678899999*****************986 PP

  == domain 2    score: 6.2 bits;  conditional E-value: 0.02
   TIGR02323 141 afsGGmqqrlqiarnlvtrprlvfm.eptGGlvsvqarllllrglvrelglaviivth.lavarlla 205
                  +sGG + +l + r+++ r  ++++ ept  l   + + ++   l    +++ iiv+h + v   ++
  MMETSP1137-20121227|7546_1 534 RLSGGWRMKLALVRAMLMRADILLLdEPTNHLDPGNVKWVI-DYLTSLKSVTSIIVSHdIKVLDQVC 599
                 68*****************9999999*****9666655542.3344444589999999888876555 PP

  == domain 3    score: 6.9 bits;  conditional E-value: 0.011
   TIGR02323  31 givGesGsGkstllkalaarlladaGe 57 
                 + +G  G+Gkst++k l+++l +d+G+
  MMETSP1137-20121227|7546_1 691 ACIGANGAGKSTMIKLLTGELEPDRGS 717
                 6789********************997 PP

  == domain 4    score: 2.3 bits;  conditional E-value: 0.31
   TIGR02323 138 kpaafsGGmqqrlqiarnlvtrprlvfm.eptGGl 171
                 +  a+sGG + ++ +a ++   p++v++ ept  l
  MMETSP1137-20121227|7546_1 886 RMGALSGGQKVKVVLAAAMWNTPHIVILdEPTNYL 920
                 55689**********************99**9765 PP

>> TIGR00956  3a01205: pleiotropic drug resistance family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.0      0.18        13     757     816 ..     405     462 ..     380     469 .. 0.77
   2 ?    0.1   0.0      0.32        23     210     259 ..     535     587 ..     530     604 .. 0.77
   3 ?    4.1   0.0     0.021       1.5     755     811 ..     655     709 ..     627     714 .. 0.83
   4 ?    0.7   0.0      0.21        15     210     242 ..     890     922 ..     881     956 .. 0.79

  Alignments for each domain:
  == domain 1    score: 1.0 bits;  conditional E-value: 0.18
   TIGR00956 757 eeifewrdltyevkikkekrvlLdevdGwvkPGkltALmGasGAGkttLlnvLaeRvttG 816
                 ++  ++ d t+ +    +++vlL++ +  +k G    L G+   Gkt L+ ++a+ +  G
  MMETSP1137-20121227|7546_1 405 DDAEQLCDCTFSL--AYGNKVLLNQTQLKLKRGYRYGLCGKNDSGKTSLMRAIANQQVEG 462
                 4445555555554..457899*******************************99987665 PP

  == domain 2    score: 0.1 bits;  conditional E-value: 0.32
   TIGR00956 210 vsGGerkRvsiaevlvakakiqcwDnatrGLDsat...alefvkalktsaeil 259
                 +sGG r ++++  +++++a i+++D+ t  LD       ++++ +lk +++i+
  MMETSP1137-20121227|7546_1 535 LSGGWRMKLALVRAMLMRADILLLDEPTNHLDPGNvkwVIDYLTSLKSVTSII 587
                 69999999999999999999999999999999765222466667777666665 PP

  == domain 3    score: 4.1 bits;  conditional E-value: 0.021
   TIGR00956 755 sgeeifewrdltyevkikkekrvlLdevdGwvkPGkltALmGasGAGkttLlnvLae 811
                 +g++i+++ ++t++ +  +  +  L +v+  v   +  A +Ga GAGk t++  L++
  MMETSP1137-20121227|7546_1 655 KGKHIMKMTNITFTYP--GAPKPQLTNVTVRVSLSTRAACIGANGAGKSTMIKLLTG 709
                 6789999999999865..56667799**************************99976 PP

  == domain 4    score: 0.7 bits;  conditional E-value: 0.21
   TIGR00956 210 vsGGerkRvsiaevlvakakiqcwDnatrGLDs 242
                 +sGG++ +v +a ++ ++++i ++D+ t  LD 
  MMETSP1137-20121227|7546_1 890 LSGGQKVKVVLAAAMWNTPHIVILDEPTNYLDR 922
                 688888888888888888888888888887774 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1045 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       338  (0.0823988); expected 82.0 (0.02)
Passed bias filter:                      198  (0.0482691); expected 82.0 (0.02)
Passed Vit filter:                        77  (0.0187713); expected 4.1 (0.001)
Passed Fwd filter:                        57  (0.0138957); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              57  [number of targets reported over threshold]
# CPU time: 1.94u 0.20s 00:00:02.14 Elapsed: 00:00:01.28
# Mc/sec: 1077.57
//
Query:       MMETSP1137-20121227|7547_1  [L=291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.9e-39  132.4   1.4    2.8e-39  131.9   1.0    1.2  1  TIGR01160 SUI1_MOF2: translation initiation factor SUI1
    2.7e-09   34.9   1.0    4.4e-09   34.2   0.7    1.3  1  TIGR01158 SUI1_rel: putative translation initiation factor SUI1


Domain annotation for each model (and alignments):
>> TIGR01160  SUI1_MOF2: translation initiation factor SUI1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  131.9   1.0   1.4e-42   2.8e-39       9     109 ..      11     111 ..       3     112 .. 0.90

  Alignments for each domain:
  == domain 1    score: 131.9 bits;  conditional E-value: 1.4e-42
   TIGR01160   9 dpfadaskedsvlagteeyihiriqqrnGrktlttvqGlkkeydlkkllkalkkelacnGtvvedaelGeviqlqGdqrkkvkeflieeglvkkdqikihG 109
                  p  da ++d+ +++ +++ihir+qqrnGrk +ttvqGl++++dlkk++ka+kk  +cnGt+ved e+G+v+q+qGdqr +v+ fl+++++++k +ik h 
  MMETSP1137-20121227|7547_1  11 VPGIDAFEDDADATTQKDLIHIRVQQRNGRKCITTVQGLSEQLDLKKIIKAVKKAHCCNGTIVEDEEMGQVLQFQGDQRDAVMSFLVDNSICEKGKIKKHA 111
                 45567777776667779*********************************************************************************995 PP

>> TIGR01158  SUI1_rel: putative translation initiation factor SUI1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.2   0.7   2.2e-12   4.4e-09      15      94 ..      18     100 ..      10     107 .. 0.80

  Alignments for each domain:
  == domain 1    score: 34.2 bits;  conditional E-value: 2.2e-12
   TIGR01158  15 eevakrpkedqvvrirrekkGRkGkevtiieGldlsdidlkelakeLKskcacGGtvkdg.....viElQGdhrekvkelLekkg 94 
                 e+ a+++++++ ++ir++++    k +t+++Gl++ + dlk++ k+ K+   c Gt+ ++     v+  QGd+r+ v+++L+++ 
  MMETSP1137-20121227|7547_1  18 EDDADATTQKDLIHIRVQQR-NGRKCITTVQGLSE-QLDLKKIIKAVKKAHCCNGTIVEDeemgqVLQFQGDQRDAVMSFLVDNS 100
                 566677899999***99988.444689******87.68************999999765423333579*************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (291 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       121  (0.0294978); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.23u 0.11s 00:00:00.34 Elapsed: 00:00:01.44
# Mc/sec: 266.73
//
Query:       MMETSP1137-20121227|7548_1  [L=482]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.4e-06   22.4   0.3    7.4e-06   21.9   0.2    1.2  1  TIGR02917 PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein
    5.2e-05   20.8   0.0       0.13    9.8   0.0    2.4  2  TIGR02552 LcrH_SycD: type III secretion low calcium response chaperone LcrH/SycD
    9.1e-05   18.7   0.8    0.00013   18.1   0.5    1.1  1  TIGR03939 PGA_TPR_OMP: poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA
     0.0001   18.9   0.0    0.00042   16.9   0.0    1.6  1  TIGR00990 3a0801s09: mitochondrial precursor proteins import receptor
     0.0012   16.2   0.1       0.39    8.0   0.0    2.4  2  TIGR02521 type_IV_pilW: type IV pilus biogenesis/stability protein PilW
     0.0036   15.7   0.0       0.49    8.8   0.0    3.0  3  TIGR02795 tol_pal_ybgF: tol-pal system protein YbgF


Domain annotation for each model (and alignments):
>> TIGR02917  PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.9   0.2   1.1e-08   7.4e-06     141     258 ..      86     207 ..      34     220 .. 0.89

  Alignments for each domain:
  == domain 1    score: 21.9 bits;  conditional E-value: 1.1e-08
   TIGR02917 141 leeAqksle.qAlaiapksleaklglAqlalaenkldearalvdevLtadpknvdAl.lL..kgdlllssgnieeAlaayrkaielkpnaiaallalatilleegefeeAekkadallkkap 258
                 l++A++ +  +  ++ap+ ++  +  A + +a+++l++a    d++L+  p     + +L  +g    ++g+ e+Al ++++a++l   ++ all ++++l ++g+++eA+++  a+++k p
  MMETSP1137-20121227|7548_1  86 LKKAEERFTlLVEEFAPNYADGYANRANVRVARGDLEGAVRDYDTALQLVPRGNSVWvNLlnRGATRSALGDTELALSDLQEAVRLSQGDKLALLGRGSVLHKLGRYAEAASDYGAVVNKRP 207
                 66776665415678999**********************************9877764333479*************************************************999998876 PP

>> TIGR02552  LcrH_SycD: type III secretion low calcium response chaperone LcrH/SycD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.8   0.0   0.00019      0.13      35     118 ..      87     174 ..      82     178 .. 0.80
   2 !    8.7   0.0   0.00042      0.29      55     114 ..     179     239 ..     175     255 .. 0.77

  Alignments for each domain:
  == domain 1    score: 9.8 bits;  conditional E-value: 0.00019
   TIGR02552  35 eeAeklFqlLaa.ldpteakywlgLaaclqalkeyeeAiaaYalaaaldlddprp...vyhaaecllalgekeeAlkaLklaieiaee 118
                 ++Ae+ F+lL+  + p+ a+  +  a ++ a ++ e+A+  Y+ a++l +   ++   ++ ++    alg++e Al++L+ a+++++ 
  MMETSP1137-20121227|7548_1  87 KKAEERFTLLVEeFAPNYADGYANRANVRVARGDLEGAVRDYDTALQLVPRGNSVwvnLLNRGATRSALGDTELALSDLQEAVRLSQG 174
                 6778888888732556666666666889999******************988876122467899********************9984 PP

  == domain 2    score: 8.7 bits;  conditional E-value: 0.00042
   TIGR02552  55 wlgLaaclqalkeyeeAiaaYalaaaldlddprpvyhaae.cllalgekeeAlkaLklaie 114
                 +lg +++l++l++y+eA+  Y++ +  ++ d +p++ ++   l++ +++ eAl   +++++
  MMETSP1137-20121227|7548_1 179 LLGRGSVLHKLGRYAEAASDYGAVVNKRPLDVQPFWLRYAiDLFEADRRLEALGIVRRVAN 239
                 578899****************************997654045566666666666665555 PP

>> TIGR03939  PGA_TPR_OMP: poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.5   1.9e-07   0.00013     341     502 ..      49     215 ..      37     229 .. 0.85

  Alignments for each domain:
  == domain 1    score: 18.1 bits;  conditional E-value: 1.9e-07
   TIGR03939 341 paknnlelee..kLfyAlleaeqyeeAqalldkllestPpqvwdfgrstkapNddyleaqslkvlllaysgdlseAekkleellatAPgNqslrl...alaeveraRgwprrAeqllkkaeslepdslsaergqaetaldlqewrqaealiddlvaryPedkqvqrL 502
                 +++ +le+++  kLf + ++ +      + ++++ ++  +   +f+  +++  ++y ++   ++++++++gdl+ A +  +++l+  P   s+++   +++  ++a g ++ A + l++a +l + +++a  g++ +  +l+ +++a     ++v++ P d q  +L
  MMETSP1137-20121227|7548_1  49 QQNSKLEDRQaiKLFESGMDLAAKGADPETQERNDDALKKAEERFTLLVEEFAPNYADGYANRANVRVARGDLEGAVRDYDTALQLVPRGNSVWVnllNRGATRSALGDTELALSDLQEAVRLSQGDKLALLGRGSVLHKLGRYAEAASDYGAVVNKRPLDVQPFWL 215
                 34345664444499999999888777777778888888889999********************************************9999986112579999999************************************************999988776555 PP

>> TIGR00990  3a0801s09: mitochondrial precursor proteins import receptor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.0   6.2e-07   0.00042     100     219 ..      78     201 ..      20     211 .. 0.74

  Alignments for each domain:
  == domain 1    score: 16.9 bits;  conditional E-value: 6.2e-07
   TIGR00990 100 avesadelpeidessvvnlseeerkkyaaklkekGnkayrnkdfdkaielyskalllke..dPvy..ysnraacynaladlekvvedttaaleldpdyvkalnrranaydqlgkyadalldlta 219
                 + e  d+     e+    l ee   +ya    ++ n    + d + a+  y+ al+l +  + v+    nr a   al+d e  + d  +a++l +    al+ r +   +lg+ya+a  d  a
  MMETSP1137-20121227|7548_1  78 TQERNDDALKKAEERFTLLVEEFAPNYADGYANRANVRVARGDLEGAVRDYDTALQLVPrgNSVWvnLLNRGATRSALGDTELALSDLQEAVRLSQGDKLALLGRGSVLHKLGRYAEAASDYGA 201
                 3444555555556666667788888899999999999999999999999999999886622455511569999999999999999999999999999999999999999999999999888765 PP

>> TIGR02521  type_IV_pilW: type IV pilus biogenesis/stability protein PilW
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.6   0.0    0.0066       4.5      60     101 ..     100     141 ..      82     145 .. 0.84
   2 !    8.0   0.0   0.00057      0.39      45      94 ..     156     205 ..     146     212 .. 0.88

  Alignments for each domain:
  == domain 1    score: 4.6 bits;  conditional E-value: 0.0066
   TIGR02521  60 ldpkdadanlalAlyyqqlgelekAeesfrkAltlkpnngdv 101
                  +p++ad ++ +A +    g+le A + + +Al+l p   +v
  MMETSP1137-20121227|7548_1 100 FAPNYADGYANRANVRVARGDLEGAVRDYDTALQLVPRGNSV 141
                 589999999999999999999999999999999999877665 PP

  == domain 2    score: 8.0 bits;  conditional E-value: 0.00057
   TIGR02521  45 gdlekAkenlekAleldpkdadanlalAlyyqqlgelekAeesfrkAltl 94 
                 gd+e A  +l++A+ l   d+ a l ++ ++ +lg+  +A+  +   ++ 
  MMETSP1137-20121227|7548_1 156 GDTELALSDLQEAVRLSQGDKLALLGRGSVLHKLGRYAEAASDYGAVVNK 205
                 8999************************************9999776665 PP

>> TIGR02795  tol_pal_ybgF: tol-pal system protein YbgF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0      0.91   6.2e+02      36      93 ..      18      76 ..      16      88 .. 0.76
   2 !    8.8   0.0   0.00072      0.49      45     101 ..     111     167 ..      80     171 .. 0.81
   3 ?    3.3   0.0     0.039        27      45      70 ..     182     207 ..     172     254 .. 0.65

  Alignments for each domain:
  == domain 1    score: -1.2 bits;  conditional E-value: 0.91
   TIGR02795 36 tlapnAqYwlGealyakkkykdAakaflevvkkypk.sekapdallklgeslqelgqke 93
                +la+ A  + G + +a   +++ +++   + ++++k +++ +  l++ g+ l++ g   
  MMETSP1137-20121227|7548_1 18 ALAASAPLLAGSLSVADTSVASTEAELVRMSQQNSKlEDRQAIKLFESGMDLAAKGADP 76
                57888888889999999999999999988888887734566778888888777776655 PP

  == domain 2    score: 8.8 bits;  conditional E-value: 0.00072
   TIGR02795  45 lGealyakkkykdAakaflevvkkypksekapdallklgeslqelgqkekAkktlqe 101
                 ++++ +a+++++ A + + ++++  p ++ +  +ll+ g   ++lg++e A + lqe
  MMETSP1137-20121227|7548_1 111 RANVRVARGDLEGAVRDYDTALQLVPRGNSVWVNLLNRGATRSALGDTELALSDLQE 167
                 7888999*******************************************9998887 PP

  == domain 3    score: 3.3 bits;  conditional E-value: 0.039
   TIGR02795  45 lGealyakkkykdAakaflevvkkyp 70 
                 +G +l + + y++Aa  + +vv+k p
  MMETSP1137-20121227|7548_1 182 RGSVLHKLGRYAEAASDYGAVVNKRP 207
                 46666777777777777777777666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (482 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        91  (0.0221843); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.42u 0.13s 00:00:00.55 Elapsed: 00:00:00.77
# Mc/sec: 826.22
//
Query:       MMETSP1137-20121227|7549_1  [L=357]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0093   13.6   0.0      0.016   12.8   0.0    1.3  1  TIGR00080 pimt: protein-L-isoaspartate O-methyltransferase


Domain annotation for each model (and alignments):
>> TIGR00080  pimt: protein-L-isoaspartate O-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.8   0.0     4e-06     0.016      17      48 ..     312     343 ..     294     353 .. 0.80

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 4e-06
   TIGR00080  17 krvikskrvldalksveReeFvpealkeaaye 48 
                 ++v  +++v++al+ v+R  F p+a+k++a +
  MMETSP1137-20121227|7549_1 312 QKVQSNPKVMNALQDVQRSGFSPAAMKKYAND 343
                 5677889********************99866 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (357 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       150  (0.0365675); expected 82.0 (0.02)
Passed bias filter:                      115  (0.0280351); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.29u 0.14s 00:00:00.43 Elapsed: 00:00:00.43
# Mc/sec: 1095.82
//
Query:       MMETSP1137-20121227|7550_1  [L=626]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (626 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        81  (0.0197465); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.15s 00:00:00.53 Elapsed: 00:00:00.53
# Mc/sec: 1558.97
//
Query:       MMETSP1137-20121227|7551_1  [L=228]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (228 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       291  (0.070941); expected 82.0 (0.02)
Passed bias filter:                      162  (0.0394929); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.12s 00:00:00.37 Elapsed: 00:00:00.42
# Mc/sec: 716.51
//
Query:       MMETSP1137-20121227|7552_1  [L=189]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (189 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        59  (0.0143832); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.15s 00:00:00.32 Elapsed: 00:00:00.35
# Mc/sec: 712.74
//
Query:       MMETSP1137-20121227|7554_1  [L=287]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.6e-08   30.9   0.0    3.6e-08   30.5   0.0    1.1  1  TIGR00877 purD: phosphoribosylamine--glycine ligase
    3.7e-05   21.1   0.0    4.6e-05   20.7   0.0    1.1  1  TIGR00768 rimK_fam: alpha-L-glutamate ligases, RimK family
    6.3e-05   19.7   0.0    9.7e-05   19.1   0.0    1.2  1  TIGR03909 pyrrolys_PylC: pyrrolysine biosynthesis protein PylC
    7.4e-05   18.7   0.0    0.00012   18.0   0.0    1.3  1  TIGR02068 cya_phycin_syn: cyanophycin synthetase
    0.00012   19.0   0.0    0.00019   18.3   0.0    1.2  1  TIGR01205 D_ala_D_alaTIGR: D-alanine--D-alanine ligase
     0.0023   14.3   0.0     0.0032   13.9   0.0    1.1  1  TIGR03103 trio_acet_GNAT: GNAT-family acetyltransferase TIGR03103
  ------ inclusion threshold ------
      0.016   10.7   0.0      0.021   10.3   0.0    1.1  1  TIGR02712 urea_carbox: urea carboxylase
      0.019   12.1   0.0      0.044   10.9   0.0    1.4  1  TIGR01983 UbiG: 3-demethylubiquinone-9 3-O-methyltransferase


Domain annotation for each model (and alignments):
>> TIGR00877  purD: phosphoribosylamine--glycine ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.5   0.0     7e-11   3.6e-08     109     220 ..     120     234 ..      92     240 .. 0.85

  Alignments for each domain:
  == domain 1    score: 30.5 bits;  conditional E-value: 7e-11
   TIGR00877 109 kdllkkagiptaeyevftepeeakeyieekgap..aivvkadgLaaGKgvivvkdeeealkaveeil.ekkkfgeagekvviEefleGeEvsllalvdgktvvplplaqdhkrvl 220
                  + ++++g+p a+ +   ++ ++++++ +++ +  ++vvk++  a+  gv++++++ee ++a e++   ++++g  + +v++ e+l+G+E  + ++    +++ +++ +  krv+
  MMETSP1137-20121227|7554_1 120 TEAVRAHGLPAAHQKLCRNMSDVEAFLADYKPEpfKAVVKPNDGAGSDGVSICNSREEVIEAFERLHgATNALGLENGSVLLQEYLRGDEYVVDTVSRDGEHKCVAIWKYDKRVF 234
                 5678899*********************99987789****************************997346788999999*************99998877777777777777776 PP

>> TIGR00768  rimK_fam: alpha-L-glutamate ligases, RimK family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.7   0.0     9e-08   4.6e-05      69     171 ..      98     206 ..      43     213 .. 0.81

  Alignments for each domain:
  == domain 1    score: 20.7 bits;  conditional E-value: 9e-08
   TIGR00768  69 eslGveviNssqaienagdKllssalLakaglplpktlvagseeeakklieeig...fPvvlKpvfGswGklvvlvedkqeaekllealeqlke....kykvflvQeyik 171
                 e+lG+++ N +q  +  +dK+  + ++ ++glp  ++ +  +  ++++++   +   f +v+Kp  G   ++v+ ++ ++e+ +  e l+   +    +  ++l+Qey  
  MMETSP1137-20121227|7554_1  98 EALGCRT-NGTQLSNLRRDKFEQTEAVRAHGLPAAHQKLCRNMSDVEAFLADYKpepFKAVVKPNDGAGSDGVSICNSREEVIEAFERLHGATNalglENGSVLLQEYLR 206
                 5667776.999999999************************************999**********************99887777766655541112456789999975 PP

>> TIGR03909  pyrrolys_PylC: pyrrolysine biosynthesis protein PylC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.0   1.9e-07   9.7e-05     125     188 ..     154     226 ..     140     236 .. 0.76

  Alignments for each domain:
  == domain 1    score: 19.1 bits;  conditional E-value: 1.9e-07
   TIGR03909 125 fPvlvkPscesssegvriindrkeleel...lkle.s.....ednlvveeyleGesvsleviGdkgnyavvki 188
                 f  +vkP ++++s gv i n+r+e+ e    l+   +     + +++++eyl+G+ + ++ +  +g+++ v i
  MMETSP1137-20121227|7554_1 154 FKAVVKPNDGAGSDGVSICNSREEVIEAferLHGAtNalgleNGSVLLQEYLRGDEYVVDTVSRDGEHKCVAI 226
                 7789******************9965542222322112222145789***************99999988876 PP

>> TIGR02068  cya_phycin_syn: cyanophycin synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.0   2.4e-07   0.00012     209     304 ..     111     215 ..      96     229 .. 0.80

  Alignments for each domain:
  == domain 1    score: 18.0 bits;  conditional E-value: 2.4e-07
   TIGR02068 209 eiasDkeltkklLkaaGvPvPeGtvvqsaeeaeeaaeelG.yP..vvikPldGnhGrGvtiniesreeiesayeaakees.......seviverfikGrdhrlLvv 304
                 ++ +Dk    + ++a+G+P  + ++  +++++e    +    P   v+kP dG    Gv i  +sree+ +a+e  +  +        +v+ + +++G ++ +  v
  MMETSP1137-20121227|7554_1 111 NLRRDKFEQTEAVRAHGLPAAHQKLCRNMSDVEAFLADYKpEPfkAVVKPNDGAGSDGVSI-CNSREEVIEAFERLHGATnalglenGSVLLQEYLRGDEYVVDTV 215
                 6789999999999*******************99877766566336**************9.69*********964433322234446899999999999977555 PP

>> TIGR01205  D_ala_D_alaTIGR: D-alanine--D-alanine ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.0   3.7e-07   0.00019      97     221 ..     106     234 ..      85     239 .. 0.77

  Alignments for each domain:
  == domain 1    score: 18.3 bits;  conditional E-value: 3.7e-07
   TIGR01205  97 gvlaSalsmdKlltKlllkalglpvadyavlerkeekseeaekekleklglpvivKpareGSSvGvskvkseeeleealeeafeyde.......evlveeaikgrelevsvlekeealpiieiveekekedF 221
                 g+  S l  dK    + ++a glp a+ ++   ++ ++ ea  ++ +   + ++vKp++   S Gvs+++s+ee+ ea+e+    ++       +vl++e++ g+e+ v ++ ++   ++++i + ++ + F
  MMETSP1137-20121227|7554_1 106 GTQLSNLRRDKFEQTEAVRAHGLPAAHQKLC--RNMSDVEAFLADYKPEPFKAVVKPNDGAGSDGVSICNSREEVIEAFERLHGATNalglengSVLLQEYLRGDEYVVDTVSRDGEHKCVAIWKYDK-RVF 234
                 5667888899*9999*********9987755..344444456668889999*************************9998755543311111127888999999999999988888888877776655.455 PP

>> TIGR03103  trio_acet_GNAT: GNAT-family acetyltransferase TIGR03103
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.0   6.2e-06    0.0032     283     382 ..     100     210 ..      94     225 .. 0.75

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 6.2e-06
   TIGR03103 283 lseltsavams.lcddkrltrrlvkeaGlqvPeqaeatkaeaveaflaehG....avvvkPvrgeqGkGisvd......vralddleaaiakarqvsdrvllerlveGedl 382
                 l   t ++ +s l  dk   + +v++ Gl   +q++ ++  +veafla++     + vvkP +g    G+s+       ++a + l+ a      ++ +vll+++  G++ 
  MMETSP1137-20121227|7554_1 100 LGCRTNGTQLSnLRRDKFEQTEAVRAHGLPAAHQKLCRNMSDVEAFLADYKpepfKAVVKPNDGAGSDGVSICnsreevIEAFERLHGATNALGLENGSVLLQEYLRGDEY 210
                 55556666666234677778899*************************875444489**************9511222233456666666666666779999999999875 PP

>> TIGR02712  urea_carbox: urea carboxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   4.1e-05     0.021     151     225 ..     154     229 ..     116     233 .. 0.85

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 4.1e-05
   TIGR02712 151 yPvmlkstaGGGGiGlqkvdsaeeleeafesvkrlgesf.fsdagvflekfvekarhvevqilGdgkGkvvalger 225
                 +  ++k   G G  G++ ++s+ee+ eafe+++  +++  +++  v l+++++   +v   +  dg+ k va+ + 
  MMETSP1137-20121227|7554_1 154 FKAVVKPNDGAGSDGVSICNSREEVIEAFERLHGATNALgLENGSVLLQEYLRGDEYVVDTVSRDGEHKCVAIWKY 229
                 5568999*************************9988765378889*************999******999998665 PP

>> TIGR01983  UbiG: 3-demethylubiquinone-9 3-O-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   8.5e-05     0.044       7      65 ..      29      93 ..      24     112 .. 0.71

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 8.5e-05
   TIGR01983  7 alaaeWwdeeGkfkiLHklnpvRleyike..kikkklkknekkle....glkvlDvGcGgGllse 65
                ++a+ W d  G+   LH   ++++e++++  + +  +++  + ++     l+ + vGc  G+l  
  MMETSP1137-20121227|7554_1 29 KVARVWSDVVGEDIKLHAPKELKMEFVATidHTTGAVEETVQAIRalxyTLRDVIVGCETGVLLA 93
                68999*********************975113333344333444455445666668**9997643 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (287 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       118  (0.0287665); expected 82.0 (0.02)
Passed bias filter:                      110  (0.0268162); expected 82.0 (0.02)
Passed Vit filter:                        18  (0.0043881); expected 4.1 (0.001)
Passed Fwd filter:                         8  (0.00195027); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.33u 0.17s 00:00:00.50 Elapsed: 00:00:00.36
# Mc/sec: 1052.25
//
Query:       MMETSP1137-20121227|7556_1  [L=210]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (210 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        53  (0.0129205); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.15s 00:00:00.32 Elapsed: 00:00:00.39
# Mc/sec: 710.71
//
Query:       MMETSP1137-20121227|7557_1  [L=229]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.8e-72  238.3   0.6    9.8e-72  238.0   0.4    1.1  1  TIGR00279 L10e: ribosomal protein L10.e
    2.7e-06   25.4   0.1    6.7e-06   24.1   0.1    1.6  1  TIGR01164 rplP_bact: ribosomal protein L16


Domain annotation for each model (and alignments):
>> TIGR00279  L10e: ribosomal protein L10.e
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  238.0   0.4   4.8e-75   9.8e-72       1     171 [.       1     174 [.       1     177 [. 0.98

  Alignments for each domain:
  == domain 1    score: 238.0 bits;  conditional E-value: 4.8e-75
   TIGR00279   1 marrparcyrdrkkkpytrkeyikavPdskvriydlGnk...saefPvsvslvakelvqirenaleaarvaankyltrvaGrsayklkirvyPhhilrenkmatgaGadriqdGmrkafGkPvgtaarvkkgqkilsvrvkdekfevakealrraamklPvptkiviekgkell 171
                 m rrp +cyr++k+kpy++++++++vPd+k+riyd G+k   +++fP + ++v+ e +q+++++leaarva+nky+ + aG+++++l+irv+P+h+lr+nkm+++aGadr+q Gmr+afGk  gt+arv++gq++lsvr++d +++++ ealrra++k+P+++++ +++++ + 
  MMETSP1137-20121227|7557_1   1 MGRRPFKCYRYQKNKPYPKSRFNRGVPDPKIRIYDAGRKkipVDDFPFAAHMVSMEKEQLSSESLEAARVACNKYMVKNAGKDSFHLRIRVHPWHVLRINKMLSCAGADRLQTGMRGAFGKTYGTVARVEIGQILLSVRARDVHKPQVMEALRRAKYKFPGRQRLCVSENWGFT 174
                 789***********************************9999******************************************************************************************************************************998765 PP

>> TIGR01164  rplP_bact: ribosomal protein L16
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.1   0.1   3.3e-09   6.7e-06      33     125 ..      52     160 ..      40     161 .. 0.75

  Alignments for each domain:
  == domain 1    score: 24.1 bits;  conditional E-value: 3.3e-09
   TIGR01164  33 lkalekawitarqieaarvaltrav.krgg....klWirifp......dkpvtkkp...aetrmGkGkGsvekwvavvkpGkvlfelag..veeevarealklaasklP 125
                 ++++ek  +++  +eaarva ++++ k++g    +l ir+ p      +k ++  +   ++t m    G+    va+v+ G++l  +    v++ ++ eal++a++k+P
  MMETSP1137-20121227|7557_1  52 MVSMEKEQLSSESLEAARVACNKYMvKNAGkdsfHLRIRVHPwhvlriNKMLSCAGadrLQTGMRGAFGKTYGTVARVEIGQILLSVRArdVHKPQVMEALRRAKYKFP 160
                 5678999****************972455533345899999843333233333333111456666677888899************98777****************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (229 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        83  (0.020234); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.21u 0.13s 00:00:00.34 Elapsed: 00:00:00.44
# Mc/sec: 686.94
//
Query:       MMETSP1137-20121227|7558_1  [L=385]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (385 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       199  (0.0485129); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.14s 00:00:00.42 Elapsed: 00:00:00.56
# Mc/sec: 907.43
//
Query:       MMETSP1137-20121227|7559_1  [L=353]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (353 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        44  (0.0107265); expected 82.0 (0.02)
Passed bias filter:                       41  (0.00999512); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.17s 00:00:00.43 Elapsed: 00:00:00.40
# Mc/sec: 1164.80
//
Query:       MMETSP1137-20121227|7561_1  [L=315]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.9e-17   60.9   0.1    7.4e-08   30.5   0.0    2.5  3  TIGR00004 TIGR00004: putative endoribonuclease L-PSP
    1.1e-08   33.1   0.6     0.0021   16.0   0.1    2.3  2  TIGR03610 RutC: pyrimidine utilization protein C


Domain annotation for each model (and alignments):
>> TIGR00004  TIGR00004: putative endoribonuclease L-PSP
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.9   0.0   2.2e-10   4.6e-07      19     120 ..      34     144 ..      18     149 .. 0.82
   2 ?   -2.2   0.0      0.48   9.9e+02      28      39 ..     151     162 ..     141     169 .. 0.72
   3 !   30.5   0.0   3.6e-11   7.4e-08      20     121 ..     173     284 ..     156     288 .. 0.81

  Alignments for each domain:
  == domain 1    score: 27.9 bits;  conditional E-value: 2.2e-10
   TIGR00004  19 avkvgnllfvsGqipldpetgelv.......eegdveeqaeqvlenlkaileaaglsledvvkvtvflkdln.dFaevnevyakyfk.eekpaRsavevaaLPkdvkvEie 120
                 + ++g+ ++v+G  ++d +t++lv       +   ve++++++ en+  i ++ag+ ++d v++ vf++d+  + a+ n+v    +   ++  R++vev aL ++   E++
  MMETSP1137-20121227|7561_1  34 GAATGDYVYVAGMRGIDQATNTLVpitgfanDTFAVEARVRKAYENMLLIAADAGAGVADCVRLVVFVTDMFpHRAAANRVTRALWGdGPYCPRTIVEVDALNQEDIFEVQ 144
                 5678999**********999998733322212335788999*****************************96267899***999876599************998877765 PP

  == domain 2    score: -2.2 bits;  conditional E-value: 0.48
   TIGR00004  28 vsGqipldpetg 39 
                  sG ipl pe  
  MMETSP1137-20121227|7561_1 151 SSGVIPLAPEGA 162
                 4999***99975 PP

  == domain 3    score: 30.5 bits;  conditional E-value: 3.6e-11
   TIGR00004  20 vkvgnllfvsGqipldpetgelv.......eegdveeqaeqvlenlkaileaaglsl.edvvkvtvflkdln.dFaevnevyakyfk.eekpaRsavevaaLPkdvkvEiea 121
                  ++g+ +fv+G  ++d et++l        +   ve++++++ en++ i +aag+++ +d v++ v+++d+  + a+ n+v  + +   ++  R++ve++aL ++   E+e 
  MMETSP1137-20121227|7561_1 173 SSAGDYVFVAGMRGIDQETNTLIpiegstnDTFAVEARVRKAYENMQFIASAAGVDVvTDCVRTVVYVTDMFpHRAAANRVIREIWGdGPYCPRTIVEISALNQEDIFEVEG 284
                 568999999999999999987642221111223588999****************96389**********96267899***999886599**************99999986 PP

>> TIGR03610  RutC: pyrimidine utilization protein C
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.1     1e-06    0.0021       6      94 ..      19     116 ..      15     146 .. 0.77
   2 !   15.4   0.0   1.6e-06    0.0033       7      98 ..     158     259 ..     153     288 .. 0.74

  Alignments for each domain:
  == domain 1    score: 16.0 bits;  conditional E-value: 1e-06
   TIGR03610   6 iipagtskplapfvpgtladgvvyvsgtlpldkdnnvv.....hvgda...aaqtrhvletikkvvetaggtlddvtfnsiflkdwady.aainevya 94 
                 + p+g+  p a +  g+ + + vyv+g+  +d+ +n +     +++d+   +a+ r+  e +  +   ag  ++d     +f++d   + aa n+v  
  MMETSP1137-20121227|7561_1  19 LAPEGAILPTAEWGLGAATGDYVYVAGMRGIDQATNTLvpitgFANDTfavEARVRKAYENMLLIAADAGAGVADCVRLVVFVTDMFPHrAAANRVTR 116
                 5799*****************************998763545566775333578899999999999******************97655155666643 PP

  == domain 2    score: 15.4 bits;  conditional E-value: 1.6e-06
   TIGR03610   7 ipagtskplapfvpgtladgvvyvsgtlpldkdnnvvh.....vgda...aaqtrhvletikkvvetagg.tlddvtfnsiflkdwa.dyaainevyaeyfp 98 
                  p+g+  p a +  g+ a + v+v+g+  +d+++n +      ++d+   +a+ r+  e ++ + ++ag   + d     ++++d   + aa n+v  e + 
  MMETSP1137-20121227|7561_1 158 APEGAILPTAEWGLGSSAGDYVFVAGMRGIDQETNTLIpiegsTNDTfavEARVRKAYENMQFIASAAGVdVVTDCVRTVVYVTDMFpHRAAANRVIREIWG 259
                 699******************************998752222233432225788999999999999999625689999999999965155677888777654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (315 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       109  (0.0265724); expected 82.0 (0.02)
Passed bias filter:                      100  (0.0243784); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.28u 0.13s 00:00:00.41 Elapsed: 00:00:00.41
# Mc/sec: 1014.06
//
Query:       MMETSP1137-20121227|7562_1  [L=386]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (386 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        70  (0.0170648); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.15s 00:00:00.43 Elapsed: 00:00:00.57
# Mc/sec: 878.41
//
Query:       MMETSP1137-20121227|7563_1  [L=319]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.1e-38  129.4  28.1    6.5e-25   86.0   2.7    3.8  3  TIGR00601 rad23: UV excision repair protein Rad23


Domain annotation for each model (and alignments):
>> TIGR00601  rad23: UV excision repair protein Rad23
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   5.8       0.3   1.2e+03      82     121 ..       8      32 ..       1      40 [. 0.45
   2 !   53.7   2.0     1e-18   4.2e-15     159     276 ..      39     155 ..      34     156 .. 0.66
   3 !   86.0   2.7   1.6e-28   6.5e-25     274     379 ..     193     317 ..     186     319 .] 0.69

  Alignments for each domain:
  == domain 1    score: -3.8 bits;  conditional E-value: 0.3
   TIGR00601  82 akaaePaatpesaptptpsatpasvaekksaaPasaveee 121
                 a    Paatp++ p+p+p                +a+++e
  MMETSP1137-20121227|7563_1   8 AXXXXPAATPAATPAPAP---------------EAAAPQE 32 
                 334456666666666665...............3332222 PP

  == domain 2    score: 53.7 bits;  conditional E-value: 1e-18
   TIGR00601 159 etveeimemGyereeverAlRAafnnPdRAveYLltGiPedleaaepaaaeqpseaaastetpqeddvaaaaaqae....teeaateaasGedpleflrnqpqfqqlRqvvqqnPelLealL 276
                   ++ + +mG+ r++v++A+RAaf n dRAveYL  GiPe+l+a +    ++     a +++p+++   +  + ++    + ++  + ++ +  le +r+++   +l q++q n ++ +alL
  MMETSP1137-20121227|7563_1  39 ASIQSLCDMGFPRDMVVAAMRAAFMNADRAVEYLTNGIPENLQAGTM--DVDAGADDADADEPSPSTWEELSR-SPaflaEVSNIRDQTQLQAYLEGMRTTDP-EKL-QLIQANAQAFAALL 155
                 6799**************************************97744..334444444444444443333333.22233244555556665666666665432.233.67888888888877 PP

  == domain 3    score: 86.0 bits;  conditional E-value: 1.6e-28
   TIGR00601 274 alLqqigkenPqLlqqisqhqEeFlqllnEp.veelegesdlveg....................tGeiaeaglgqieqiqvtpeekeaieRLkalGFdrdlviqaylACdknEelAanyLleqnad 379
                 a Lq + ++ P++l+ ++q++E+  qll+ p v+++ ++ +++e+                    +G++++       q q+t+e++ea++RL alGF+r++v+qa+lACdknE+lAan+L++q+ +
  MMETSP1137-20121227|7563_1 193 AGLQAMLAQRPEMLESLMQNPEALRQLLQSPeVQQMLQNPEVQEQlglspelmqammgglgggggGGGMGAVL--SAVQAQLTEEDEEALQRLMALGFPREVVVQAFLACDKNENLAANFLFDQGGE 317
                 4455555666666666666666666666665355555555555555555555555555554332222222222..23399*******************************************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (319 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       164  (0.0399805); expected 82.0 (0.02)
Passed bias filter:                      143  (0.034861); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.31u 0.15s 00:00:00.46 Elapsed: 00:00:00.44
# Mc/sec: 956.92
//
Query:       MMETSP1137-20121227|7564_1  [L=642]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0048   12.5  20.3     0.0061   12.1  14.1    1.1  1  TIGR02168 SMC_prok_B: chromosome segregation protein SMC


Domain annotation for each model (and alignments):
>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.1  14.1   1.5e-06    0.0061     765     927 ..     327     489 ..     270     541 .. 0.50

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 1.5e-06
   TIGR02168 765 reeleeeleeaeeelkeaeeeieeleaeieqlkeelkalrealseleaeltelkeeaa..ekeerleslekeiaalekeleeleeqieeleeeiesleaeieeleeele.eleeeleellkekasleealaelreeleelseelrelekkvkelereleelrekla 927
                  ++le+++    ++ ++ae+ +++  ae +++ +e++ lr++l+e+ea ++++ e+a+    ++r ++  +  ++ +++l+e++++ ++l+ + ++l+ + +++e++l+ ++ +++++++++++sl+++ + +r+  +el+++  el++++ e+++e+ +l+++l+
  MMETSP1137-20121227|7564_1 327 VRTLESRV---AAAEAAAEKARAQAAAERRAAASEANGLRRRLAEAEAIAQAQCEAARvaIDAKREADRLASEEQSRRQLREAAAACADLTRRYAQLRGAAATTEAALRqRADAAVAAADDARRSLAQQQKLARDLADELDRSRYELSTRLLEAQHEIGRLKDRLE 489
                 11111111...11123333333333333333333334444444444333332222222001112222222222233333334444444444444444444444444333233333444444444444444444444444444444444444444444444444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (642 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       293  (0.0714286); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.15s 00:00:00.69 Elapsed: 00:00:00.51
# Mc/sec: 1661.51
//
Query:       MMETSP1137-20121227|7565_1  [L=445]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.7e-15   53.3   0.0    2.1e-14   51.2   0.0    1.8  1  TIGR03674 fen_arch: flap structure-specific endonuclease
      6e-08   29.3   0.9    0.00019   17.7   0.1    2.4  3  TIGR00600 rad2: DNA excision repair protein (rad2)


Domain annotation for each model (and alignments):
>> TIGR03674  fen_arch: flap structure-specific endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.2   0.0     1e-17   2.1e-14      73     260 ..      78     278 ..      64     296 .. 0.82

  Alignments for each domain:
  == domain 1    score: 51.2 bits;  conditional E-value: 1e-17
   TIGR03674  73 ikpvyvFDGkppelKkeeleeRrevreeaeekleealekgdleeaak.yakrsarldeeivedskkLlellgipyvqApsegEAqaaymvkkgdvdavgsqDYDsLlfGaprl.............vrnltisgkrklpkknvyvevkpElieLeevLkelgitreqLidiailvGTDyn..egvkgiGpkkalklikelgdle 260
                  + +  FDG +   K+++ + Rr+ r+ a++k ++  ++g ++ a +  a+++a ++ e+   +   l+ lg+ +++Ap e++ q a+  ++g +dav + D D L  G + +             + +l +++  +lp+ +++++ +p + +L ++ ++ g+    L+  a lvG D+   + ++ iG   al ++ +l +l 
  MMETSP1137-20121227|7565_1  78 RQAIAFFDGAVRPYKAATNAARRDLRAAATAKAKALHAEGAHATAIQqAASAAAGVTPELRRACVCELSRLGVQVIEAPFEADGQMAFAFRNGSIDAVLTSDSDLLALGCRVIrlsvkgpisslgrIGQLVLYDVSRLPSPQTAIDTDP-VSSLASLVAASGVH--VLVVYASLVGCDFTasRKLERIGHAAALAILSHLHSLC 278
                 567788**********************************987766505677889******************************************************9765444333333333344777788888888888888887.56788888888875..69999999999998778999999999999988876665 PP

>> TIGR00600  rad2: DNA excision repair protein (rad2)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.4   0.0   1.6e-05     0.032       1     103 [.       1     111 [.       1     116 [. 0.73
   2 !   17.7   0.1   9.5e-08   0.00019     764     830 ..     123     189 ..      97     191 .. 0.86
   3 ?   -3.0   0.0      0.18   3.6e+02     862     889 ..     243     272 ..     241     274 .. 0.83

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 1.6e-05
   TIGR00600   1 mGVqglWkllecsgrpvk.l.etLegKilAvDiSiWlyqalK...avRDk..eGNaiknsHlltlFrRlCKLLf..FrirPvFVFDGdaPlLKrqTlakRrqRrdkasedar 103
                 mG+ glWk l   g ++  l + L g ++ vD+S +++ a+K   a+ ++  +GNa  +   +t+ rR   L+    + + +  FDG +   K  T a Rr+ r  a  +a+
  MMETSP1137-20121227|7565_1   1 MGITGLWKELASCGVRIDdLdGRLTGWRIGVDVSCFMNAAVKlpkAAMEQvvHGNAAPDQATMTV-RRCFELVQreCGRQAIAFFDGAVRPYKAATNAARRDLRAAATAKAK 111
                 9******9776666666524368*****************9744366665568998877766664.5555555422456788888999888888888888888887777776 PP

  == domain 2    score: 17.7 bits;  conditional E-value: 9.5e-08
   TIGR00600 764 kqqqkRiadeVTgqmikEsqELLrlFGiPYivAPmEAEAqCakLdlldlvdGiiTDDSDvfLFGark 830
                  qq    a+ VT ++ + +   L++ G+  i AP EA+ q a   +   +d ++T DSD+   G r 
  MMETSP1137-20121227|7565_1 123 IQQAASAAAGVTPELRRACVCELSRLGVQVIEAPFEADGQMAFAFRNGSIDAVLTSDSDLLALGCRV 189
                 4577788999*********999**************************************9999875 PP

  == domain 3    score: -3.0 bits;  conditional E-value: 0.18
   TIGR00600 862 inLAyLLGSDYTeG..lptvGpVsalEiln 889
                 +  A L+G D+T    l+++G  +al il 
  MMETSP1137-20121227|7565_1 243 VVYASLVGCDFTASrkLERIGHAAALAILS 272
                 66799*******754499********9996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (445 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       134  (0.032667); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.12s 00:00:00.51 Elapsed: 00:00:00.57
# Mc/sec: 1012.67
//
Query:       MMETSP1137-20121227|7566_1  [L=331]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (331 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        82  (0.0199902); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.13s 00:00:00.37 Elapsed: 00:00:00.38
# Mc/sec: 1149.69
//
Query:       MMETSP1137-20121227|7567_1  [L=590]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00016   18.8   3.2    0.00016   18.8   2.2    1.8  2  TIGR00599 rad18: DNA repair protein rad18


Domain annotation for each model (and alignments):
>> TIGR00599  rad18: DNA repair protein rad18
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   2.2     4e-08   0.00016      27      69 ..     369     414 ..     364     438 .. 0.86
   2 ?   -3.4   0.9      0.22     9e+02     119     168 ..     530     579 ..     521     587 .. 0.58

  Alignments for each domain:
  == domain 1    score: 18.8 bits;  conditional E-value: 4e-08
   TIGR00599  27 lRChvCkdffk...aPvltsCsHtFCslCiRrcLseepkCPlCrae 69 
                 + C +C+   k   + ++  C+H FC  Ci ++ ++  kCPlC + 
  MMETSP1137-20121227|7567_1 369 VMCAICHSSIKpmeVALVRGCDHPFCCNCILNWSKQRKKCPLCNTA 414
                 679***98754222899**************************865 PP

  == domain 2    score: -3.4 bits;  conditional E-value: 0.22
   TIGR00599 119 skkklieeeeakgvdeeseddlrsasssraaakkktadilqlssdtskrn 168
                 s kk  +  +a+g d++s     sa+ss + ++k   +  ++ ++ s+++
  MMETSP1137-20121227|7567_1 530 STKKGKAGRSASGGDSASVGASSSANSSGGYSRKAEIKAEKQAQKESQKE 579
                 44555555555666777777777777777777766554444444433333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (590 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       107  (0.0260848); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.15s 00:00:00.54 Elapsed: 00:00:00.40
# Mc/sec: 1946.84
//
Query:       MMETSP1137-20121227|7568_1  [L=139]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (139 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       133  (0.0324232); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.13s 00:00:00.29 Elapsed: 00:00:00.56
# Mc/sec: 321.87
//
Query:       MMETSP1137-20121227|7569_1  [L=1006]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1006 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       108  (0.0263286); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.56u 0.15s 00:00:00.71 Elapsed: 00:00:00.47
# Mc/sec: 2825.13
//
Query:       MMETSP1137-20121227|7570_1  [L=477]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (477 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        95  (0.0231594); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.16s 00:00:00.48 Elapsed: 00:00:00.42
# Mc/sec: 1499.02
//
Query:       MMETSP1137-20121227|7571_1  [L=200]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (200 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        33  (0.00804486); expected 82.0 (0.02)
Passed bias filter:                       32  (0.00780107); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.14s 00:00:00.32 Elapsed: 00:00:00.32
# Mc/sec: 824.93
//
Query:       MMETSP1137-20121227|7572_1  [L=137]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0002   17.0   8.5    0.00022   16.9   5.9    1.0  1  TIGR02168 SMC_prok_B: chromosome segregation protein SMC
    0.00059   15.4   8.3     0.0007   15.2   5.7    1.0  1  TIGR02169 SMC_prok_A: chromosome segregation protein SMC
  ------ inclusion threshold ------
      0.013   12.3   4.5      0.015   12.2   3.1    1.0  1  TIGR00414 serS: serine--tRNA ligase
      0.025   12.7   0.1      0.037   12.2   0.1    1.5  1  TIGR02844 spore_III_D: sporulation transcriptional regulator SpoIIID
      0.056   11.2   2.6      0.068   10.9   1.8    1.1  1  TIGR02132 phaR_Bmeg: polyhydroxyalkanoic acid synthase, PhaR subunit
       0.29    7.5   3.7       0.19    8.1   0.5    1.6  2  TIGR02398 gluc_glyc_Psyn: glucosylglycerol-phosphate synthase
       0.33    7.7   6.8       0.41    7.4   4.7    1.1  1  TIGR01843 type_I_hlyD: type I secretion membrane fusion protein, HlyD family


Domain annotation for each model (and alignments):
>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   5.9   3.8e-07   0.00022     368     452 ..      39     123 ..      28     137 .] 0.76

  Alignments for each domain:
  == domain 1    score: 16.9 bits;  conditional E-value: 3.8e-07
   TIGR02168 368 eelesrleeleeeleelrsevaeleeqlaslnaelerleaeleqleerrerlkqeieelekkleeaeaelkelqeeleeleeele 452
                 +el s +eel+e+ eel++ +a+ ee++a+++++l+ l ++l++++++++r  ++++e +k ++e+ea+ +++ e+ ++l + l+
  MMETSP1137-20121227|7572_1  39 NELVSCIEELREKREELNRSIAADEEEKAKIQNDLRILTERLSRINDNLARKIASRTEYDKTIQETEAAYSKILESSQTLLHVLK 123
                 5677788999999999999999999999999999999999999999999999999999999999888888777665555444333 PP

>> TIGR02169  SMC_prok_A: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   5.7   1.2e-06    0.0007     258     355 ..      35     131 ..      25     136 .. 0.82

  Alignments for each domain:
  == domain 1    score: 15.2 bits;  conditional E-value: 1.2e-06
   TIGR02169 258 eeeieelekeleeiekkleelnkkieklgeeeqlavkekleelkaeiekleraiaekeeeledaeerlakaeaeidklkeeieelereieeekkerek 355
                 +   +el   +ee+++k+eeln+ i +  eee+++++++l+ l+  ++++++++a k     + +++++++ea ++k+ e  + l + +++e ++ +k
  MMETSP1137-20121227|7572_1  35 QYYNNELVSCIEELREKREELNRSIAA-DEEEKAKIQNDLRILTERLSRINDNLARKIASRTEYDKTIQETEAAYSKILESSQTLLHVLKRESVNLTK 131
                 555667778889999999999999988.8899999999999999999999999999999999999999999999999999998888888777766554 PP

>> TIGR00414  serS: serine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   3.1   2.5e-05     0.015      40     129 ..      39     134 ..      26     137 .] 0.79

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 2.5e-05
   TIGR00414  40 kkllskieelqkkrnelskeigkkkaekkdkiee....lkkelkelkeeleeleaelkeleeeleekllkipnlvaes...vpvgkdeednlevkke 129
                 ++l s ieel++kr+el+++i+++++ek++  ++    l+++l++ + +l+++ a+  e ++ ++e     + +++ s   + v k e+ nl  kk+
  MMETSP1137-20121227|7572_1  39 NELVSCIEELREKREELNRSIAADEEEKAKI-QNdlriLTERLSRINDNLARKIASRTEYDKTIQETEAAYSKILESSqtlLHVLKRESVNLTKKKQ 134
                 5667889***************988777764.4446779999**********999999999999999999999966552224567777777776665 PP

>> TIGR02844  spore_III_D: sporulation transcriptional regulator SpoIIID
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.1   6.3e-05     0.037      40      66 ..      76     102 ..      45     121 .. 0.86

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 6.3e-05
   TIGR02844  40 lterlPeinpelaeevkevldknkaer 66 
                 lterl +in +la+++ +  +++k+++
  MMETSP1137-20121227|7572_1  76 LTERLSRINDNLARKIASRTEYDKTIQ 102
                 6**************999999998765 PP

>> TIGR02132  phaR_Bmeg: polyhydroxyalkanoic acid synthase, PhaR subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   1.8   0.00012     0.068      87     180 ..      41     125 ..      28     136 .. 0.75

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 0.00012
   TIGR02132  87 kvelleeqlddkvdeleaqqesasalkkdvtklksdvksldkkldkvlellegqqktqdelketiqkqiktqgeqlqaqllekqeklleklkee 180
                  v  +ee l +k +el+    s +a   + +k+++d++ l ++l ++ + l  +  ++ e  +tiq+   +      +++le  + ll+ lk e
  MMETSP1137-20121227|7572_1  41 LVSCIEE-LREKREELN---RSIAADEEEKAKIQNDLRILTERLSRINDNLARKIASRTEYDKTIQETEAA-----YSKILESSQTLLHVLKRE 125
                 5666766.455668888...7888889999**********************99999********976444.....445555555555544444 PP

>> TIGR02398  gluc_glyc_Psyn: glucosylglycerol-phosphate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.7      0.05        29     300     323 ..      38      61 ..      31      90 .. 0.66
   2 ?    8.1   0.5   0.00032      0.19     266     318 ..      64     119 ..      55     131 .. 0.77

  Alignments for each domain:
  == domain 1    score: 0.9 bits;  conditional E-value: 0.05
   TIGR02398 300 ikellvayerllerreellgkvvl 323
                 ++el+ + e l e+reel+  ++ 
  MMETSP1137-20121227|7572_1  38 NNELVSCIEELREKREELNRSIAA 61 
                 679999************987653 PP

  == domain 2    score: 8.1 bits;  conditional E-value: 0.00032
   TIGR02398 266 vaaasveeriekireela..grkli.lsaervdytkGikellvayerllerreell 318
                  ++a++++ ++ + e l+     l    a+r +y k i+e   ay ++le  + ll
  MMETSP1137-20121227|7572_1  64 EEKAKIQNDLRILTERLSriNDNLArKIASRTEYDKTIQETEAAYSKILESSQTLL 119
                 578888888888888877433334313489********************998875 PP

>> TIGR01843  type_I_hlyD: type I secretion membrane fusion protein, HlyD family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   4.7    0.0007      0.41     139     230 ..      39     131 ..      24     136 .. 0.69

  Alignments for each domain:
  == domain 1    score: 7.4 bits;  conditional E-value: 0.0007
   TIGR01843 139 salraqlesleaqikqleaeleglqaqlqalrqqleliseelealrkLkekglvsrlelLelereraelqgelaelea.eleklkaeldelee 230
                 ++l + +e+l +++++l+ +++  +++ ++++++l+++ e+l   +   ++++ sr e+ +  +e +++ +++ e+ +  l++lk+e  +l +
  MMETSP1137-20121227|7572_1  39 NELVSCIEELREKREELNRSIAADEEEKAKIQNDLRILTERLSRINDNLARKIASRTEYDKTIQETEAAYSKILESSQtLLHVLKRESVNLTK 131
                 556666777777777777777777778888888888888888777777777888888888777777666666555444045667776666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (137 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       268  (0.065334); expected 82.0 (0.02)
Passed bias filter:                      132  (0.0321794); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.22u 0.19s 00:00:00.41 Elapsed: 00:00:00.38
# Mc/sec: 475.86
//
Query:       MMETSP1137-20121227|7573_1  [L=747]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (747 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        69  (0.0168211); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.16s 00:00:00.60 Elapsed: 00:00:01.06
# Mc/sec: 930.15
//
Query:       MMETSP1137-20121227|7574_1  [L=366]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (366 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        82  (0.0199902); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.14s 00:00:00.39 Elapsed: 00:00:00.59
# Mc/sec: 818.78
//
Query:       MMETSP1137-20121227|7575_1  [L=350]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (350 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        54  (0.0131643); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.13s 00:00:00.38 Elapsed: 00:00:00.38
# Mc/sec: 1215.69
//
Query:       MMETSP1137-20121227|7576_1  [L=496]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (496 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        67  (0.0163335); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.17s 00:00:00.51 Elapsed: 00:00:00.44
# Mc/sec: 1487.88
//
Query:       MMETSP1137-20121227|7577_1  [L=442]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   9.2e-120  397.9   2.5   1.2e-119  397.6   1.7    1.0  1  TIGR01242 26Sp45: 26S proteasome subunit P45 family
      5e-80  267.4   0.4    7.4e-80  266.9   0.3    1.1  1  TIGR01241 FtsH_fam: ATP-dependent metallopeptidase HflB
    7.1e-75  250.5   0.8    9.8e-75  250.1   0.6    1.1  1  TIGR01243 CDC48: AAA family ATPase, CDC48 subfamily
    1.7e-57  193.1   0.7    2.1e-57  192.8   0.5    1.1  1  TIGR03689 pup_AAA: proteasome ATPase
    7.3e-07   25.9   0.0    1.2e-06   25.2   0.0    1.3  1  TIGR03922 T7SS_EccA: type VII secretion AAA-ATPase EccA
    3.3e-06   24.1   1.9    0.00018   18.4   0.0    2.4  3  TIGR00390 hslU: ATP-dependent protease HslVU, ATPase subunit
    5.5e-06   23.3   0.0    0.00032   17.5   0.0    2.9  3  TIGR02928 TIGR02928: orc1/cdc6 family replication initiation protein
    4.3e-05   20.5   0.0    6.4e-05   19.9   0.0    1.2  1  TIGR00382 clpX: ATP-dependent Clp protease, ATP-binding subunit ClpX
    0.00024   17.5   0.0    0.00042   16.7   0.0    1.3  1  TIGR00763 lon: ATP-dependent protease La
    0.00026   17.9   0.0    0.00045   17.2   0.0    1.3  1  TIGR02881 spore_V_K: stage V sporulation protein K
    0.00028   17.9   0.0    0.00054   16.9   0.0    1.4  1  TIGR00635 ruvB: Holliday junction DNA helicase RuvB
     0.0011   15.4   0.0     0.0021   14.4   0.0    1.4  1  TIGR02903 spore_lon_C: ATP-dependent protease, Lon family
     0.0013   15.3   0.1     0.0032   14.0   0.0    1.6  1  TIGR02902 spore_lonB: ATP-dependent protease LonB
  ------ inclusion threshold ------
      0.012   12.0   0.0      0.019   11.4   0.0    1.2  1  TIGR00368 TIGR00368: Mg chelatase-like protein
      0.013   12.9   0.0      0.021   12.1   0.0    1.3  1  TIGR02640 gas_vesic_GvpN: gas vesicle protein GvpN
      0.014   13.0   0.1      0.029   11.9   0.1    1.5  1  TIGR03941 tRNA_deam_assoc: putative tRNA adenosine deaminase-associated protein


Domain annotation for each model (and alignments):
>> TIGR01242  26Sp45: 26S proteasome subunit P45 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  397.6   1.7  4.5e-122  1.2e-119      49     363 ..     111     425 ..      90     426 .. 0.97

  Alignments for each domain:
  == domain 1    score: 397.6 bits;  conditional E-value: 4.5e-122
   TIGR01242  49 vvevlddervvvksstGpkfvvnvskfidrkelkpGarvalnqrtlaivdvlptekdplvkaleveerpevsyediGGlekqlreireavelplkkpelfeevGieppkGvllyGppGtGktllakavaeetnatfirvvgselvkkyiGeGarlvrevfklakekapsiifideidaiaakrldsstsGdrevqrtllqllaeldGfdprgnvkviaatnrldildpallrpGrfdrlievplpdleGrleilkihtrkmklaedvdleelaklteGasGadlkaivteaGmfaireerdkvtmedflkavekv 363
                 +    dd + +++ ++  kfvv +   +   +++ G rv ++++ + i   lp + dp+v+ + vee+p+++y+d GG +++++++re++elp+ +pe f ++Gi+ppkG+llyGppGtGktl a+ava++t+a firv+gselv+ky+GeGar+vre+f++a+ k  +i+f+de+dai+  r d  ++Gd evqrt+l+++ +ldGf++rgnvk++ atnr+d ldpallrpGr+dr +e  lpdleGr  i++ih+r m+   ++ +e la+l   ++Gad++++++eaGm air +r++vt +d+++av+kv
  MMETSP1137-20121227|7577_1 111 INPNTDDAKYMINVKQIAKFVVGLGDRVAPADIEEGMRVGVDRNKYQIQIPLPPKIDPTVTMMTVEEKPDITYNDXGGNKDEIQKLREVLELPMLHPERFVQLGIDPPKGILLYGPPGTGKTLAARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFLDEVDAIGGTRFDDGAGGDNEVQRTMLEIVNQLDGFEARGNVKILMATNRPDTLDPALLRPGRLDRKVEFGLPDLEGRASIFQIHARSMNCERNIRFELLARLCPNTTGADIRSVCIEAGMXAIRARRKTVTEKDMIDAVNKV 425
                 344568999999999*********************************999***********************************************************************************************************************************************************************************************************************************************************************9 PP

>> TIGR01241  FtsH_fam: ATP-dependent metallopeptidase HflB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  266.9   0.3   2.9e-82   7.4e-80      45     304 ..     173     433 ..     166     437 .. 0.97

  Alignments for each domain:
  == domain 1    score: 266.9 bits;  conditional E-value: 2.9e-82
   TIGR01241  45 lleeekvkvtfkdvaGideakeelveivdf.LknpkkftklGakiPkGvllvGpPGtGktLlakavaGeagvpffsisGsdfvemfvGvGasrvrDlfeqakknaPciifiDeiDavGrkrgaglgggndereqtLnqlLvemDGfetnegvivlaatnrpdvLDkaLlrPGrfDrqvvvdkPdlkgreeilkvhakkvklaeevdlkkvarrtpGfsGadlanlvneaallaarknkkevtlkeleeavdrviaGlekks 304
                 ++ eek+ +t++d  G +++ + l e+++  + +p++f +lG   PkG+ll+GpPGtGktL a+ava   +  f+++ Gs++v+ +vG Ga  vr+lf+ a+++  ci+f+De+Da+G +r    +gg +e+++t+  ++ ++DGfe++ +v +l atnrpd LD+aLlrPGr+Dr+v   +Pdl+gr +i+++ha+ ++ ++++  + +ar  p  +Gad+  ++ ea + a r ++k+vt k++ +av++vi G +k s
  MMETSP1137-20121227|7577_1 173 MTVEEKPDITYNDXGGNKDEIQKLREVLELpMLHPERFVQLGIDPPKGILLYGPPGTGKTLAARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFLDEVDAIGGTRFDDGAGGDNEVQRTMLEIVNQLDGFEARGNVKILMATNRPDTLDPALLRPGRLDRKVEFGLPDLEGRASIFQIHARSMNCERNIRFELLARLCPNTTGADIRSVCIEAGMXAIRARRKTVTEKDMIDAVNKVIKGYSKFS 433
                 66789***********************986789****************************************************************************************999999********************************************************************************************************************************99866 PP

>> TIGR01243  CDC48: AAA family ATPase, CDC48 subfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  250.1   0.6   3.8e-77   9.8e-75     169     399 ..     175     408 ..     155     428 .. 0.91

  Alignments for each domain:
  == domain 1    score: 250.1 bits;  conditional E-value: 3.8e-77
   TIGR01243 169 etkvpevtyedigglkeavkkirelvelplkhpelfeklgieppkgvllygppgtgktllakavaneagayfiaingpeimskyygeseerlreifkeaeenapsiifideidaiapkr..eevtgeve.krvvaqlltlmdglkgrgkvivigatnrpdaldpalrrpgrfdreieigvpdkegrkeilqihtrnmplaedvdldklaevthgfvgadlaalakeaamaalrr 399
                   + p++ty+d gg k++++k+re++elp+ hpe f +lgi+ppkg+llygppgtgktl a+avan ++a fi + g e++ ky+ge  + +re+f+ a     +i+f+de+dai   r  + + g+ e +r + +++  +dg+  rg+v ++ atnrpd+ldpal rpgr+dr++e g pd egr+ i+qih+r+m  + ++ ++ la +    +gad+ +++ ea m a+r 
  MMETSP1137-20121227|7577_1 175 VEEKPDITYNDXGGNKDEIQKLREVLELPMLHPERFVQLGIDPPKGILLYGPPGTGKTLAARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFLDEVDAIGGTRfdDGAGGDNEvQRTMLEIVNQLDGFEARGNVKILMATNRPDTLDPALLRPGRLDRKVEFGLPDLEGRASIFQIHARSMNCERNIRFELLARLCPNTTGADIRSVCIEAGMXAIRA 408
                 3367***************************************************************************************************************9988645566766546788899999*****************************************************************************************99874 PP

>> TIGR03689  pup_AAA: proteasome ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  192.8   0.5   8.3e-60   2.1e-57      96     378 ..      95     368 ..      68     420 .. 0.87

  Alignments for each domain:
  == domain 1    score: 192.8 bits;  conditional E-value: 8.3e-60
   TIGR03689  96 lvvealdaervGeivtlkevlddgralvvdkadeervvklagalaeeklraGdsllvdlka.glaleavpks..eveelvleevPdvtyadiGGldsqieqirdavelPflhkelyreydlkpPkGvllyGPPGcGktliakavanslaekvaedgeaksyflnikGPellnkyvGeterqirliferarekaaegrPvvvffdemdslfrtr...GsGvssdvettvvPqllaeldGveslenviviGasnredlidPailrPGrldvkirierPdaeaaadilakyl 378
                 ++ e ++ + +   + ++   dd++ ++  k+  + vv l + +a + +++G ++ vd++  ++ +   pk    v  + +ee Pd+ty+d GG +++i+++r+ +elP+lh+e + + ++ pPkG+llyGPPG+Gktl a+avan           + + f+ + G el++kyvGe  r +r +f+ ar k       +vf+de+d++  tr   G+G   +v+ t++  ++ +ldG e+  nv ++ a+nr d +dPa+lrPGrld k+  + Pd e+ a i++ + 
  MMETSP1137-20121227|7577_1  95 MMQEEQPLQVARCTKIINPNTDDAKYMINVKQIAKFVVGLGDRVAPADIEEGMRVGVDRNKyQIQIPLPPKIdpTVTMMTVEEKPDITYNDXGGNKDEIQKLREVLELPMLHPERFVQLGIDPPKGILLYGPPGTGKTLAARAVANR----------TDACFIRVIGSELVQKYVGEGARMVRELFQMARSKK----ACIVFLDEVDAIGGTRfddGAGGDNEVQRTML-EIVNQLDGFEARGNVKILMATNRPDTLDPALLRPGRLDRKVEFGLPDLEGRASIFQIHA 368
                 44444444444444556667889999********************************8651444444445422689999****************************************************************983..........4689*****************************875....58*************98778888888888876.7999************************************************9998774 PP

>> TIGR03922  T7SS_EccA: type VII secretion AAA-ATPase EccA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.2   0.0   4.8e-09   1.2e-06     285     390 ..     190     292 ..     186     316 .. 0.80

  Alignments for each domain:
  == domain 1    score: 25.2 bits;  conditional E-value: 4.8e-09
   TIGR03922 285 keqvaalkssvevalvRaerGlavaqr.skHlllaGPPGtGkttiArvvakiyaGlgvlrkpevrEvsRadligeyigeseaktnelidkaLgg...vlFlDEayaLvek 390
                 k+++++l++ +e+ ++  er ++      k +ll GPPGtGkt  Ar+va+             + v  ++l+ +y+ge +    el + a  +   ++FlDE+ a+  +
  MMETSP1137-20121227|7577_1 190 KDEIQKLREVLELPMLHPERFVQLGIDpPKGILLYGPPGTGKTLAARAVANRT-------DACFIRVIGSELVQKYVGEGARMVRELFQMARSKkacIVFLDEVDAIGGT 292
                 889999999999999999998888755268899*****************985.......344566888999**********99999988865333399****9887655 PP

>> TIGR00390  hslU: ATP-dependent protease HslVU, ATPase subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0       2.8   7.1e+02     132     179 ..      81     129 ..      56     147 .. 0.58
   2 !   18.4   0.0   7.2e-07   0.00018      47     104 ..     218     273 ..     212     275 .. 0.90
   3 !    5.7   0.0    0.0048       1.2     243     284 ..     273     313 ..     268     327 .. 0.78

  Alignments for each domain:
  == domain 1    score: -3.3 bits;  conditional E-value: 2.8
   TIGR00390 132 llppaknqfgeee.ekdeeesakealrkklreGelddkeieievseksp 179
                 l pp++ ++++ +   +ee+  + a   k+ + + dd +  i+v++   
  MMETSP1137-20121227|7577_1  81 LAPPSQWDLVSDKqMMQEEQPLQVARCTKIINPNTDDAKYMINVKQIAK 129
                 4455554444333144555555556667777777777777777766554 PP

  == domain 2    score: 18.4 bits;  conditional E-value: 7.2e-07
   TIGR00390  47 PknilmiGstGvGkteiarrlaklaeaPfikveatkftevGyvGrdveslvrdlvdaa 104
                 Pk il+ G+ G Gkt  ar +a  ++a fi+v  +   +  yvG     +vr+l ++a
  MMETSP1137-20121227|7577_1 218 PKGILLYGPPGTGKTLAARAVANRTDACFIRVIGSELVQ-KYVGEG-ARMVRELFQMA 273
                 9*********************************99986.699965.57999998765 PP

  == domain 3    score: 5.7 bits;  conditional E-value: 0.0048
   TIGR00390 243 drveesGiifideidkiakkgessgadvsreGvqrdllPive 284
                  r  +  i+f+de+d i       ga    + vqr +l iv+
  MMETSP1137-20121227|7577_1 273 ARSKKACIVFLDEVDAIGGTRFDDGAGGD-NEVQRTMLEIVN 313
                 5677899**********988855555544.459*****9997 PP

>> TIGR02928  TIGR02928: orc1/cdc6 family replication initiation protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.0   1.3e-06   0.00032      39      64 ..     217     242 ..     188     250 .. 0.86
   2 ?    1.5   0.0      0.09        23     121     141 ..     270     289 ..     262     298 .. 0.75
   3 ?   -0.5   0.0      0.36        93     250     275 ..     400     425 ..     396     432 .. 0.88

  Alignments for each domain:
  == domain 1    score: 17.5 bits;  conditional E-value: 1.3e-06
   TIGR02928  39 rpsnvliyGktGtGKtavtkkvlkel 64 
                  p+ +l+yG++GtGKt+++++v ++ 
  MMETSP1137-20121227|7577_1 217 PPKGILLYGPPGTGKTLAARAVANRT 242
                 6899******************9975 PP

  == domain 2    score: 1.5 bits;  conditional E-value: 0.09
   TIGR02928 121 vkeleeredsliivLDEiDkl 141
                 ++ + +++++ i+ LDE+D +
  MMETSP1137-20121227|7577_1 270 FQ-MARSKKACIVFLDEVDAI 289
                 44.4567889999******98 PP

  == domain 3    score: -0.5 bits;  conditional E-value: 0.36
   TIGR02928 250 eageiAeeegsekvteehvekAqeki 275
                 eag  A +  +++vte+++ +A +k+
  MMETSP1137-20121227|7577_1 400 EAGMXAIRARRKTVTEKDMIDAVNKV 425
                 6999**************99999887 PP

>> TIGR00382  clpX: ATP-dependent Clp protease, ATP-binding subunit ClpX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.0   2.5e-07   6.4e-05     119     195 ..     220     290 ..     211     314 .. 0.83

  Alignments for each domain:
  == domain 1    score: 19.9 bits;  conditional E-value: 2.5e-07
   TIGR00382 119 nilliGptGsGktllaqtlakeldvpfaiadattlteaGyvGedvenillkllqaadydvekaekGiiyideidkia 195
                  ill Gp G+Gktl a+++a++ d  f     + l +  yvGe    ++ +l+q a       +  i+++de+d i 
  MMETSP1137-20121227|7577_1 220 GILLYGPPGTGKTLAARAVANRTDACFIRVIGSELVQ-KYVGEGA-RMVRELFQMARS----KKACIVFLDEVDAIG 290
                 59*************************8888888876.7****97.578999999864....3568********996 PP

>> TIGR00763  lon: ATP-dependent protease La
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0   1.6e-06   0.00042     356     433 ..     221     290 ..     216     313 .. 0.72

  Alignments for each domain:
  == domain 1    score: 16.7 bits;  conditional E-value: 1.6e-06
   TIGR00763 356 lclvGPPGVGKtSlaksiAkalnrkfvrlslGGlkDvaeikGHRrtYvGalPGkiiqglkkv..ktenPlillDEiDKlg 433
                 + l+GPPG GKt  a+++A+ ++ +f+r+  G     +e+    + YvG    +++  l ++  +++  +++lDE+D +g
  MMETSP1137-20121227|7577_1 221 ILLYGPPGTGKTLAARAVANRTDACFIRVI-G-----SEL---VQKYVGE-GARMVRELFQMarSKKACIVFLDEVDAIG 290
                 789*************************83.3.....333...2457775.45777776654223456677777777776 PP

>> TIGR02881  spore_V_K: stage V sporulation protein K
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.0   1.7e-06   0.00045      46     117 ..     222     289 ..     196     328 .. 0.84

  Alignments for each domain:
  == domain 1    score: 17.2 bits;  conditional E-value: 1.7e-06
   TIGR02881  46 ifkGnPGtGkttvarllaklfkelnvlskGhlieveradlvGeyiGhtaqktrevikka...lGGvlfideaysl 117
                 ++ G PGtGkt  ar +a+            +i v  ++lv +y+G+ a+ +re+ + a   +  ++f+de  ++
  MMETSP1137-20121227|7577_1 222 LLYGPPGTGKTLAARAVANRT-------DACFIRVIGSELVQKYVGEGARMVRELFQMArskKACIVFLDEVDAI 289
                 67899************9864.......56688889999***************988772224689999998665 PP

>> TIGR00635  ruvB: Holliday junction DNA helicase RuvB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.0   2.1e-06   0.00054      32      92 ..     220     288 ..     195     292 .. 0.73

  Alignments for each domain:
  == domain 1    score: 16.9 bits;  conditional E-value: 2.1e-06
   TIGR00635  32 hvllyGPPGlGkttlakiiakelgvk.lkitsgpalekp.gDlaailtal......eegdvlfiDeihr 92 
                  +llyGPPG Gkt  a+ +a+  ++  ++++ +  ++k  g+ a ++ +l      ++  ++f+De+ +
  MMETSP1137-20121227|7577_1 220 GILLYGPPGTGKTLAARAVANRTDACfIRVIGSELVQKYvGEGARMVRELfqmarsKKACIVFLDEVDA 288
                 69*******************998643788888888774233333433332212224556777777765 PP

>> TIGR02903  spore_lon_C: ATP-dependent protease, Lon family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.0   8.3e-06    0.0021     175     197 ..     218     240 ..     210     247 .. 0.87

  Alignments for each domain:
  == domain 1    score: 14.4 bits;  conditional E-value: 8.3e-06
   TIGR02903 175 pqhiilyGppGvGkttaarlale 197
                 p+ i+lyGppG Gkt aar + +
  MMETSP1137-20121227|7577_1 218 PKGILLYGPPGTGKTLAARAVAN 240
                 899****************8865 PP

>> TIGR02902  spore_lonB: ATP-dependent protease LonB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.0   1.2e-05    0.0032      86     109 ..     218     241 ..     211     252 .. 0.86

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 1.2e-05
   TIGR02902  86 pqhviiyGppGvGktaaarlvlee 109
                 p+ +++yGppG Gkt aar v + 
  MMETSP1137-20121227|7577_1 218 PKGILLYGPPGTGKTLAARAVANR 241
                 78899**************99765 PP

>> TIGR00368  TIGR00368: Mg chelatase-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   7.4e-05     0.019     204     231 ..     211     238 ..     197     244 .. 0.83

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 7.4e-05
   TIGR00368 204 leiaaaGghnllllGPPGsGktllakrl 231
                 +++ +     +ll GPPG+Gktl a+ +
  MMETSP1137-20121227|7577_1 211 VQLGIDPPKGILLYGPPGTGKTLAARAV 238
                 55566666789*************9976 PP

>> TIGR02640  gas_vesic_GvpN: gas vesicle protein GvpN
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   8.3e-05     0.021      24      56 ..     221     253 ..     208     271 .. 0.84

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 8.3e-05
   TIGR02640  24 vhlrGPaGtGktslalhvakkrdrPvvllnGda 56 
                 + l GP GtGkt  a++va++ d   + + G +
  MMETSP1137-20121227|7577_1 221 ILLYGPPGTGKTLAARAVANRTDACFIRVIGSE 253
                 7799*******************9999999975 PP

>> TIGR03941  tRNA_deam_assoc: putative tRNA adenosine deaminase-associated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.1   0.00011     0.029      87     122 ..      13      49 ..       2      69 .. 0.80

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 0.00011
   TIGR03941  87 ldvdvpdedd.deeeeaeaepwpeGDldllaDlGlse 122
                 + + +pd+d+ +ee++ + ++ +eGD++ll+  Gl  
  MMETSP1137-20121227|7577_1  13 AMPPAPDDDPmEEEANXKIRALDEGDIALLKTYGLGP 49 
                 3456799999999999***************999865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (442 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       163  (0.0397367); expected 82.0 (0.02)
Passed bias filter:                      140  (0.0341297); expected 82.0 (0.02)
Passed Vit filter:                        41  (0.00999512); expected 4.1 (0.001)
Passed Fwd filter:                        16  (0.00390054); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              16  [number of targets reported over threshold]
# CPU time: 0.50u 0.19s 00:00:00.69 Elapsed: 00:00:01.06
# Mc/sec: 550.37
//
Query:       MMETSP1137-20121227|7578_1  [L=175]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.013   12.9   0.6      0.018   12.4   0.2    1.5  2  TIGR00799 mtp: Golgi 4-transmembrane spanning transporter


Domain annotation for each model (and alignments):
>> TIGR00799  mtp: Golgi 4-transmembrane spanning transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.2   4.5e-06     0.018      87     145 ..       2      63 ..       1     118 [. 0.82
   2 ?   -1.9   0.0       0.1   4.3e+02      73     100 ..     112     139 ..      89     156 .. 0.54

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 4.5e-06
   TIGR00799  87 klllpalslqvmdyllclltllg...syielpaylkla.rsr.assskiPlltlrlldfvlsil 145
                 +l+++als qvm  l+ ll l+g     +e+ a l+l  r+  + s++ P    rl+ fv+ + 
  MMETSP1137-20121227|7578_1   2 MLVIGALSGQVM--LVPLLLLFGlslITMEFGAALELVnRPLnSKSWQEPATWKRLIVFVFGCT 63 
                 79**********..666776666311356999****998886156899************9886 PP

  == domain 2    score: -1.9 bits;  conditional E-value: 0.1
   TIGR00799  73 isvslllgvvksreklllpalslqvmdy 100
                 ++v  l  +++    ++ + + +q   +
  MMETSP1137-20121227|7578_1 112 FAVVALRVLLNPPSEYIRGEVMYQTLSF 139
                 3443344444444455555555555444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (175 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       109  (0.0265724); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.19u 0.12s 00:00:00.31 Elapsed: 00:00:00.35
# Mc/sec: 659.95
//
Query:       MMETSP1137-20121227|7579_1  [L=61]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.016   12.8   1.2      0.023   12.2   0.8    1.3  1  TIGR02098 MJ0042_CXXC: MJ0042 family finger-like domain


Domain annotation for each model (and alignments):
>> TIGR02098  MJ0042_CXXC: MJ0042 family finger-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.8   5.6e-06     0.023      23      36 ..      11      24 ..       6      26 .. 0.80

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 5.6e-06
   TIGR02098 23 ggkVRCgkCghvwt 36
                 ++VRC+ C+h+ +
  MMETSP1137-20121227|7579_1 11 QRAVRCKACSHRCK 24
                579********866 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        85  (0.0207216); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.45
# Mc/sec: 178.92
//
Query:       MMETSP1137-20121227|7580_1  [L=125]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.6e-07   28.0   0.3    1.2e-06   26.3   0.0    1.7  2  TIGR03677 rpl7ae: 50S ribosomal protein L7Ae


Domain annotation for each model (and alignments):
>> TIGR03677  rpl7ae: 50S ribosomal protein L7Ae
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.1     0.029   1.2e+02      21      37 ..      14      30 ..       4      32 .. 0.75
   2 !   26.3   0.0     3e-10   1.2e-06      17     103 ..      31     117 ..      21     123 .. 0.85

  Alignments for each domain:
  == domain 1    score: 0.5 bits;  conditional E-value: 0.029
   TIGR03677 21 aretGkikkGtnevtka 37
                a +  k kkGt e + a
  MMETSP1137-20121227|7580_1 14 ASKIAKKKKGTSESINA 30
                44566789999998865 PP

  == domain 2    score: 26.3 bits;  conditional E-value: 3e-10
   TIGR03677  17 avekaretGkikkGtnevtkaverGiaklvviaedveP...eeivahlpalceekkipyvyvkkkedlGkaaGlevsaaavaivdeGkae 103
                  ++ + ++Gk + G   + k++ +G++k+++i+ +  P   +ei  +  +l+  k   ++y  ++  lG+a+G    ++ v+ivd G+++
  MMETSP1137-20121227|7580_1  31 RLALVMKSGKANLGYKSTLKSLRQGKSKMILISSNCPPlrrSEI-EYYAMLA--KTAVHAYAGNNIVLGTACGKMFRTSVVSIVDVGDSD 117
                 5778899****************************999443455.4556665..7888999**************************975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (125 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       140  (0.0341297); expected 82.0 (0.02)
Passed bias filter:                      120  (0.029254); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.16u 0.16s 00:00:00.32 Elapsed: 00:00:00.37
# Mc/sec: 445.91
//
Query:       MMETSP1137-20121227|7581_1  [L=712]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (712 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       133  (0.0324232); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.16s 00:00:00.60 Elapsed: 00:00:00.52
# Mc/sec: 1807.24
//
Query:       MMETSP1137-20121227|7582_1  [L=240]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.046   11.1   0.0      0.062   10.6   0.0    1.1  1  TIGR00761 argB: acetylglutamate kinase


Domain annotation for each model (and alignments):
>> TIGR00761  argB: acetylglutamate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   1.5e-05     0.062     122     201 ..      79     158 ..      73     173 .. 0.81

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 1.5e-05
   TIGR00761 122 kvnkelleallkagiipviaslaldeegqllNvnaDtaAaelAaaleAekLvlLtdva.Gilegdkksliseleleeieql 201
                 +v+ +ll +  +a ++pv+a+ a+d+  +llN+  D++A  + + +   + ++  d+   i+++d  +  +e+++ +i++ 
  MMETSP1137-20121227|7582_1  79 AVQGALLXSGATAVFTPVLAADATDDGRKLLNLPDDKLAEIVTKDITERQFLVTGDITrSIYSED-CTFKDEIDTYTIDKW 158
                 677788888889999*****************************999999998888751555553.346677777766665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (240 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        86  (0.0209654); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.23u 0.18s 00:00:00.41 Elapsed: 00:00:00.46
# Mc/sec: 688.64
//
Query:       MMETSP1137-20121227|7583_1  [L=134]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (134 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        40  (0.00975134); expected 82.0 (0.02)
Passed bias filter:                       36  (0.00877621); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.14s 00:00:00.32 Elapsed: 00:00:00.33
# Mc/sec: 535.96
//
Query:       MMETSP1137-20121227|7584_1  [L=177]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (177 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        43  (0.0104827); expected 82.0 (0.02)
Passed bias filter:                       41  (0.00999512); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.13s 00:00:00.29 Elapsed: 00:00:00.31
# Mc/sec: 753.62
//
Query:       MMETSP1137-20121227|7585_1  [L=800]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.019   11.2   0.0      0.038   10.2   0.0    1.4  1  TIGR01389 recQ: ATP-dependent DNA helicase RecQ


Domain annotation for each model (and alignments):
>> TIGR01389  recQ: ATP-dependent DNA helicase RecQ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   9.3e-06     0.038     210     349 ..     437     579 ..     419     619 .. 0.79

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 9.3e-06
   TIGR01389 210 nkkkqlleylkkereksGiiYassRkkveelaeaLeskgiealaYhaGlskkvRaeaqekFleddvkv...vvatvaFGmGidksdvRfvihldlPknlesyyqeaGRaGRDGlkaeaillyseaDl.allkrlieeseasedr 349
                    + +++ l +e ++  +i+++  k  + l+++L+ +g++     + +s+++R +  ++F+  d+++   +++t a G+G++ +     i +d   n  +  q   R  R G+  + +++y  a   ++++++++ ++++ + 
  MMETSP1137-20121227|7585_1 437 MLLDRIMTRLFQEGGHKVLIFSQMTKMLDILEDYLSLRGYSFRRLDGTMSSDERLQGMRDFQDTDNEIdvfLLSTRAGGLGVNLTAADTCIIFDSDWNPHADLQAQDRCHRIGQTKK-VMVYRLATAaTVEEKVLHAAKQKLKL 579
                 5556677778888888889*******************************************999987444669*********9999999999999999999999999999998765.45555554404455555555554444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (800 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       135  (0.0329108); expected 82.0 (0.02)
Passed bias filter:                       96  (0.0234032); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.17s 00:00:00.69 Elapsed: 00:00:00.42
# Mc/sec: 2514.08
//
Query:       MMETSP1137-20121227|7586_1  [L=414]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (414 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       224  (0.0546075); expected 82.0 (0.02)
Passed bias filter:                      114  (0.0277913); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.18s 00:00:00.52 Elapsed: 00:00:01.37
# Mc/sec: 398.86
//
Query:       MMETSP1137-20121227|7587_1  [L=512]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (512 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        74  (0.01804); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.13s 00:00:00.47 Elapsed: 00:00:00.50
# Mc/sec: 1351.57
//
Query:       MMETSP1137-20121227|7588_1  [L=186]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (186 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       101  (0.0246221); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.13s 00:00:00.31 Elapsed: 00:00:00.30
# Mc/sec: 818.33
//
Query:       MMETSP1137-20121227|7589_1  [L=1037]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1037 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       681  (0.166017); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.93u 0.13s 00:00:01.06 Elapsed: 00:00:01.02
# Mc/sec: 1341.89
//
Query:       MMETSP1137-20121227|7590_1  [L=1042]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.062   10.1   0.0      0.096    9.5   0.0    1.2  1  TIGR04095 dnd_restrict_1: DNA phosphorothioation system restriction enzyme


Domain annotation for each model (and alignments):
>> TIGR04095  dnd_restrict_1: DNA phosphorothioation system restriction enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   0.0   2.3e-05     0.096       7     145 ..     115     254 ..     108     282 .. 0.69

  Alignments for each domain:
  == domain 1    score: 9.5 bits;  conditional E-value: 2.3e-05
   TIGR04095   7 lelrdyqkeaikaWfk.....nngrGilkmatGtGktltaLalvskl.aekikslvvvvvvPykhLveqWakeaekFgle.pilayesvsrWqkelsekleelsskakkllliittnatlkeekFqsqlrllkkkllliaDeahnl 145
                  ++++yq ++++ W++       g Gil+   G Gktl a+al+++l a ++     +vv+P    ++ W+ ++ +F  +  +l + ++++  +e+ + l++l ++++  +++++  +++  +   + lr++      + Deah l
  MMETSP1137-20121227|7590_1 115 CKMHNYQLDGLR-WAAgllqhGTGGGILADEMGLGKTLQAIALMAHLdAATSAGCRHLVVAPLST-ISGWTDQLSRFYPSlTVLRHTGTAASRAEARAGLARLGLGQS--CALLASYESVLADG--DSLRKCGGWSCAVIDEAHRL 254
                 567888888875.5432221156889*********************656667788999999876.678999999986441355566666666777777777655543..33444444444332..45556666666666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1042 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       109  (0.0265724); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.67u 0.18s 00:00:00.85 Elapsed: 00:00:00.90
# Mc/sec: 1528.14
//
Query:       MMETSP1137-20121227|7591_1  [L=237]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (237 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        75  (0.0182838); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.14s 00:00:00.35 Elapsed: 00:00:00.48
# Mc/sec: 651.70
//
Query:       MMETSP1137-20121227|7592_1  [L=369]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (369 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        82  (0.0199902); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.15s 00:00:00.40 Elapsed: 00:00:00.40
# Mc/sec: 1217.60
//
Query:       MMETSP1137-20121227|7593_1  [L=389]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (389 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        82  (0.0199902); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.13s 00:00:00.41 Elapsed: 00:00:00.42
# Mc/sec: 1222.47
//
Query:       MMETSP1137-20121227|7594_1  [L=194]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (194 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       108  (0.0263286); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.17s 00:00:00.36 Elapsed: 00:00:00.34
# Mc/sec: 753.11
//
Query:       MMETSP1137-20121227|7595_1  [L=381]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (381 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       142  (0.0346173); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.17s 00:00:00.46 Elapsed: 00:00:00.37
# Mc/sec: 1359.13
//
Query:       MMETSP1137-20121227|7596_1  [L=613]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.9e-22   75.9   0.0    2.1e-13   47.7   0.0    2.2  2  TIGR01988 Ubi-OHases: ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family
    9.5e-15   52.1   0.0    8.4e-09   32.5   0.0    2.4  2  TIGR01984 UbiH: 2-polyprenyl-6-methoxyphenol 4-hydroxylase
    2.5e-11   41.0   0.0    2.9e-05   21.0   0.0    2.3  2  TIGR01989 COQ6: ubiquinone biosynthesis monooxygenase COQ6
    2.5e-09   35.1   0.6     0.0029   15.2   0.1    3.2  3  TIGR02032 GG-red-SF: geranylgeranyl reductase family
    1.4e-05   21.9   0.3     0.0024   14.6   0.0    2.3  2  TIGR02360 pbenz_hydroxyl: 4-hydroxybenzoate 3-monooxygenase
    1.4e-05   22.1   1.5      0.027   11.3   0.2    3.3  3  TIGR02023 BchP-ChlP: geranylgeranyl reductase
    3.1e-05   20.7   0.3    4.5e-05   20.1   0.2    1.2  1  TIGR02734 crtI_fam: phytoene desaturase
    4.8e-05   20.5   0.4    0.00015   18.9   0.1    1.9  2  TIGR01790 carotene-cycl: lycopene cyclase family protein
    5.7e-05   19.5   0.6    9.6e-05   18.7   0.4    1.2  1  TIGR03997 mycofact_OYE_2: mycofactocin system FadH/OYE family oxidoreductase 2
    6.7e-05   19.7   0.1    0.00012   18.9   0.1    1.3  1  TIGR01316 gltA: glutamate synthase (NADPH), homotetrameric
    8.2e-05   19.9   0.8    0.00015   19.1   0.5    1.4  1  TIGR03467 HpnE: squalene-associated FAD-dependent desaturase
    0.00011   18.8   0.1     0.0052   13.3   0.0    2.4  3  TIGR03219 salicylate_mono: salicylate 1-monooxygenase
    0.00017   18.8   0.0    0.00032   17.8   0.0    1.4  1  TIGR00292 TIGR00292: thiazole biosynthesis enzyme
    0.00027   17.7   0.3     0.0004   17.1   0.2    1.2  1  TIGR00275 TIGR00275: flavoprotein, HI0933 family
    0.00029   17.5   0.4    0.00052   16.7   0.3    1.4  1  TIGR01350 lipoamide_DH: dihydrolipoyl dehydrogenase
    0.00034   17.3   0.2     0.0005   16.7   0.1    1.2  1  TIGR01813 flavo_cyto_c: flavocytochrome c
    0.00045   16.7   0.2     0.0008   15.9   0.2    1.3  1  TIGR03140 AhpF: alkyl hydroperoxide reductase, F subunit
    0.00049   15.4   0.1    0.00074   14.8   0.0    1.1  1  TIGR03315 Se_ygfK: putative selenate reductase, YgfK subunit
    0.00066   16.4   0.3      0.001   15.8   0.2    1.3  1  TIGR04018 Bthiol_YpdA: putative bacillithiol system oxidoreductase, YpdA family
    0.00069   16.6   0.1     0.0012   15.8   0.1    1.3  1  TIGR03197 MnmC_Cterm: tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain
     0.0012   15.6   0.2     0.0019   14.9   0.1    1.2  1  TIGR01317 GOGAT_sm_gam: glutamate synthase, NADH/NADPH, small subunit
     0.0014   15.7   0.2     0.0024   14.9   0.1    1.3  1  TIGR03169 Nterm_to_SelD: pyridine nucleotide-disulfide oxidoreductase family protein
     0.0018   15.2   0.2     0.0029   14.5   0.1    1.3  1  TIGR03364 HpnW_proposed: FAD dependent oxidoreductase TIGR03364
     0.0029   13.2   0.2     0.0046   12.6   0.1    1.2  1  TIGR01372 soxA: sarcosine oxidase, alpha subunit family
     0.0042   13.6   0.2     0.0062   13.1   0.1    1.2  1  TIGR02733 desat_CrtD: C-3',4' desaturase CrtD
     0.0093   12.3   0.2      0.013   11.8   0.1    1.2  1  TIGR01812 sdhA_frdA_Gneg: succinate dehydrogenase or fumarate reductase, flavoprotein subunit
  ------ inclusion threshold ------
      0.014   12.0   2.2      0.019   11.5   0.1    2.2  3  TIGR02028 ChlP: geranylgeranyl reductase
      0.014   12.0   0.1      0.023   11.3   0.1    1.2  1  TIGR01373 soxB: sarcosine oxidase, beta subunit family
      0.015   11.3   0.1       0.02   10.9   0.1    1.2  1  TIGR01816 sdhA_forward: succinate dehydrogenase, flavoprotein subunit
      0.015   12.1   0.4      0.025   11.4   0.2    1.2  1  TIGR03378 glycerol3P_GlpB: glycerol-3-phosphate dehydrogenase, anaerobic, B subunit
      0.017   11.6   0.1      0.026   10.9   0.1    1.2  1  TIGR01318 gltD_gamma_fam: glutamate synthase, small subunit
      0.041   10.5   1.4       0.04   10.5   0.2    1.5  2  TIGR01292 TRX_reduct: thioredoxin-disulfide reductase


Domain annotation for each model (and alignments):
>> TIGR01988  Ubi-OHases: ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.7   0.0   1.6e-15   2.1e-13       1     171 [.      63     260 ..      63     269 .. 0.85
   2 !   26.0   0.0   6.2e-09   7.9e-07     254     349 ..     359     457 ..     306     460 .. 0.68

  Alignments for each domain:
  == domain 1    score: 47.7 bits;  conditional E-value: 1.6e-15
   TIGR01988   1 divIvGgGlvGlalAlaLassadlkvalveakaaek........akspafdnRvsAlsaasiellekigvwdklekkraqpiqkirvsdagskgalefdaaevgaeaLgyvvenkvlqqaLlealqekkn...kvtllapaeveelere.................sdaveltlsdgetleakLlvgADGanSkvrqaa 171
                 +iv+vGgG++Gla+A+aLa+++ ++++++e+ a++         + + ++    + l  + ++ l++ig+wd++e+  ++ +   + +  g++ +   ++   ++++L  v++ ++l ++Lle++++      +v + ++++ +++++e                 + a++ +++ + +l+a+L+v+ADGa++++++a+
  MMETSP1137-20121227|7596_1  63 EIVVVGGGPAGLATAIALAQRGMKRITVLERLAPPParpeevgvWGAXVARYYLIGLGGRGQKALKEIGAWDSVEP-FCSTVVGRKDWAPGAPVDGGVERIFTDRPYLTRVIQRERLVACLLEKVRTDYAxsiNVMHGVEVDSVSWPTEdkvvlscsmcddvcaaeEGAHARATDAAFELSASLMVAADGARRTIADAI 260
                 59****************************988776688888887777777788999999****************.**************9999999999999**********************99877455555555555556655999999999999999844444444555556*************9998765 PP

  == domain 2    score: 26.0 bits;  conditional E-value: 6.2e-09
   TIGR01988 254 g........aitlvgeraafPLslthakryvaer.valiGdAAhtvhPlAGQGlNlGlrDvaaLaevlaeavergedigslavLkrYererradnaallaatdll 349
                          a + +++ ++ PL      r+ +++ ++l+GdAAhtv P  G G+N  ++Dvaa  ++l e+ + +      ++++ ++++r a++ +++++ + +
  MMETSP1137-20121227|7596_1 359 SplisdddlAAVAAKPSSRLPLFRYVGPRLHHRGaTVLLGDAAHTVXPYFGLGVNSAFEDVAAXKTALDETSSVK------DAVRLFSKRRAAEARIIVQMSRSF 457
                 3455566666777788888888888877776654379*******************************9987774......555667777777766666666555 PP

>> TIGR01984  UbiH: 2-polyprenyl-6-methoxyphenol 4-hydroxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.5   0.0   6.5e-11   8.4e-09       1     169 [.      63     261 ..      63     269 .. 0.83
   2 !   17.0   0.0   3.4e-06   0.00044     275     344 ..     391     457 ..     373     461 .. 0.83

  Alignments for each domain:
  == domain 1    score: 32.5 bits;  conditional E-value: 6.5e-11
   TIGR01984   1 dviivGgglvGlslAlaLsrksklkialieaksaeaakssf.......dars..lalsagskqileklgiweklekeatpikdihvsdrgafgalelraeevalpaLGyVveladlkqallkrlae..kkkiklyapaelkeierekde..................aevkldneq.kleakLlvaAdGanskvresls 169
                 ++++vGgg++Gl++A+aL++ +  +i+++e  ++  a++++        ar   + l    +++l+++g w+++e++   +   +    ga +   +++   ++p L  V++ ++l ++ll+++ +  + +i++++  e++++   ++                   a+ ++ +   +l+a+L+vaAdGa+++++ ++ 
  MMETSP1137-20121227|7596_1  63 EIVVVGGGPAGLATAIALAQRGMKRITVLERLAPPPARPEEvgvwgaxVARYylIGLGGRGQKALKEIGAWDSVEPFCSTVVGRKDWAPGAPVDGGVERIFTDRPYLTRVIQRERLVACLLEKVRTdyAXSINVMHGVEVDSVSWPTEDkvvlscsmcddvcaaeegAHARATDAAfELSASLMVAADGARRTIADAIA 261
                 59********************999*****999888755443455555566522556666789*************99999888888888999999999999********************98652267899999999999987666669*******99999998866666555569****************98765 PP

  == domain 2    score: 17.0 bits;  conditional E-value: 3.4e-06
   TIGR01984 275 kervvlignaAqtlhPiAgQGfNlGlrDvltLaevledarkdlGeaallqeylkerkeDraatigltdeL 344
                 +   vl+g+aA+t+ P  g G N    Dv++   +l +        ++++ ++k+r++   ++++++++ 
  MMETSP1137-20121227|7596_1 391 RGATVLLGDAAHTVXPYFGLGVNSAFEDVAAXKTALDETS---SVKDAVRLFSKRRAAEARIIVQMSRSF 457
                 45589*****************************999885...455677778899998888888888765 PP

>> TIGR01989  COQ6: ubiquinone biosynthesis monooxygenase COQ6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.0   2.7e-06   0.00035       2     183 ..      63     254 ..      62     262 .. 0.74
   2 !   21.0   0.0   2.3e-07   2.9e-05     336     370 ..     395     429 ..     369     438 .. 0.88

  Alignments for each domain:
  == domain 1    score: 17.4 bits;  conditional E-value: 2.7e-06
   TIGR01989   2 DvvivGgGlvGlalAaalkknpslkdkkvllldavdapklksrkyekks.evysnRvssitpasielfkkigawdhiekdRikkfkklq.vwdscskalieferkdvkeelafiiEndvilasllerlkeeksdnvkvknkaklksvtlpkk...........spndnsnlvkikledg.etlktklliGADGanS 183
                 ++v+vGgG++Gla A al++      k++++l+    p  + ++    +  v    +  +  +  + +k+igawd +e      + +   +  +  ++ +e    d + +l+ +i  + ++a lle+++   +  ++v    ++ sv++p +           +  + ++ ++ + +d   +l++ l++ ADGa+ 
  MMETSP1137-20121227|7596_1  63 EIVVVGGGPAGLATAIALAQRG---MKRITVLERLAPPPARPEEVGVWGaXVARYYLIGLGGRGQKALKEIGAWDSVEPFCSTVVGRKDwAPGAPVDGGVERIFTD-RPYLTRVIQRERLVACLLEKVRTDYAXSINVMHGVEVDSVSWPTEdkvvlscsmcdDVCAAEEGAHARATDAaFELSASLMVAADGARR 254
                 59****************9875...589*****9888777765554433034444577889999**************9999988875413344455555533332.479*******************9999*****************985555554443311333334444444333789999******9875 PP

  == domain 2    score: 21.0 bits;  conditional E-value: 2.3e-07
   TIGR01989 336 ALvGDAAHrvHPLAGqGvNlGfsDvesLvkalaea 370
                  L+GDAAH+v P  G GvN  f+Dv++  +al+e+
  MMETSP1137-20121227|7596_1 395 VLLGDAAHTVXPYFGLGVNSAFEDVAAXKTALDET 429
                 699************************99999875 PP

>> TIGR02032  GG-red-SF: geranylgeranyl reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.1   2.3e-05    0.0029       3      31 ..      64      93 ..      63      98 .. 0.86
   2 ?    5.0   0.0     0.028       3.6     122     160 ..     228     265 ..     169     294 .. 0.77
   3 !   11.4   0.0   0.00031      0.04     251     287 ..     378     416 ..     336     423 .. 0.69

  Alignments for each domain:
  == domain 1    score: 15.2 bits;  conditional E-value: 2.3e-05
   TIGR02032  3 vvvvGaGpaGssaAlrlakkGl.rVlllek 31
                +vvvG+GpaG ++A  la+ G+ r+ +le+
  MMETSP1137-20121227|7596_1 64 IVVVGGGPAGLATAIALAQRGMkRITVLER 93
                7********************834667765 PP

  == domain 2    score: 5.0 bits;  conditional E-value: 0.028
   TIGR02032 122 ekvkvevredekkevtakivigAdGakskvakklglkke 160
                 e +++++ +    e++a ++++AdGa+  +a+++  + e
  MMETSP1137-20121227|7596_1 228 EGAHARATD-AAFELSASLMVAADGARRTIADAIAKEDE 265
                 445555444.6899*************999998775544 PP

  == domain 3    score: 11.4 bits;  conditional E-value: 0.00031
   TIGR02032 251 iPirrad..ektvtgnvllvGDAAglVkPltGeGIayam 287
                 +P+ r+   + +++g ++l+GDAA +V P  G G++ a 
  MMETSP1137-20121227|7596_1 378 LPLFRYVgpRLHHRGATVLLGDAAHTVXPYFGLGVNSAF 416
                 5655554114567778******************99886 PP

>> TIGR02360  pbenz_hydroxyl: 4-hydroxybenzoate 3-monooxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   0.0     0.014       1.7       4      33 ..      63      93 ..      60      97 .. 0.86
   2 !   14.6   0.0   1.9e-05    0.0024     264     325 ..     376     438 ..     343     457 .. 0.77

  Alignments for each domain:
  == domain 1    score: 5.1 bits;  conditional E-value: 0.014
   TIGR02360  4 qvaiigaGpsGlllgqllhkaGidav.iler 33
                +++++g+Gp+Gl  +  l ++G++ + +ler
  MMETSP1137-20121227|7596_1 63 EIVVVGGGPAGLATAIALAQRGMKRItVLER 93
                6899*******************98746776 PP

  == domain 2    score: 14.6 bits;  conditional E-value: 1.9e-05
   TIGR02360 264 siaplrsfvaepmry.GrlflaGdaahivpptGakGlnlaasdvaylyealleaykekdsagl 325
                 s  pl  +v   +++ G   l Gdaah v p    G+n+a  dva   +al e+ + kd+  l
  MMETSP1137-20121227|7596_1 376 SRLPLFRYVGPRLHHrGATVLLGDAAHTVXPYFGLGVNSAFEDVAAXKTALDETSSVKDAVRL 438
                 55677777777666558899*******************************998777665544 PP

>> TIGR02023  BchP-ChlP: geranylgeranyl reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.3   0.2   0.00021     0.027       2      31 ..      63      93 ..      62      97 .. 0.84
   2 ?    3.6   0.0     0.045       5.8     134     170 ..     233     269 ..     209     290 .. 0.82
   3 ?    4.2   0.0     0.031       3.9     264     315 ..     392     443 ..     379     453 .. 0.84

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 0.00021
   TIGR02023  2 dvlviGggpsGaaaaetLakagievi.ller 31
                +++v+Gggp+G a a+ La+ g++ i +ler
  MMETSP1137-20121227|7596_1 63 EIVVVGGGPAGLATAIALAQRGMKRItVLER 93
                589******************9876525665 PP

  == domain 2    score: 3.6 bits;  conditional E-value: 0.045
   TIGR02023 134 eageekksveadvviGaDGakskvakelglgknlkkv 170
                  a+++   + a++++ aDGa+ ++a+++   +++++ 
  MMETSP1137-20121227|7596_1 233 RATDAAFELSASLMVAADGARRTIADAIAKEDETRRW 269
                 466667778899****************999887765 PP

  == domain 3    score: 4.2 bits;  conditional E-value: 0.031
   TIGR02023 264 ervvLvGDaaGlvakasGeGiyyamksGklaaeaivealksgdatdLrkyek 315
                 +  vL GDaa  v +  G G+  a++       a++e++++ da  L + ++
  MMETSP1137-20121227|7596_1 392 GATVLLGDAAHTVXPYFGLGVNSAFEDVAAXKTALDETSSVKDAVRLFSKRR 443
                 45799********************988888889999999888888877666 PP

>> TIGR02734  crtI_fam: phytoene desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.2   3.5e-07   4.5e-05       1      33 [.      64      97 ..      64     106 .. 0.87

  Alignments for each domain:
  == domain 1    score: 20.1 bits;  conditional E-value: 3.5e-07
   TIGR02734  1 avViGaGlgGLAlAirLaaaGi.evtvlekrdkp 33
                +vV+G+G +GLA+Ai La+ G+ ++tvle+ + p
  MMETSP1137-20121227|7596_1 64 IVVVGGGPAGLATAIALAQRGMkRITVLERLAPP 97
                69*******************9459****98766 PP

>> TIGR01790  carotene-cycl: lycopene cyclase family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.1   1.1e-06   0.00015       2      45 ..      64     109 ..      63     118 .. 0.80
   2 ?   -2.5   0.0       3.6   4.7e+02     260     315 ..     391     445 ..     376     465 .. 0.61

  Alignments for each domain:
  == domain 1    score: 18.9 bits;  conditional E-value: 1.1e-06
   TIGR01790   2 liviGgGlAglaiAlelakpgl.rvqlieaapk.lpfnntygvwed 45 
                 ++v+GgG+Agla A +la++g+ r+ ++e  ++  + +++ gvw++
  MMETSP1137-20121227|7596_1  64 IVVVGGGPAGLATAIALAQRGMkRITVLERLAPpPARPEEVGVWGA 109
                 79********************558888865442666777888876 PP

  == domain 2    score: -2.5 bits;  conditional E-value: 3.6
   TIGR01790 260 eqkvvavGaaAglvHPatgYsvaralseApklaaaiaqalalsselataawkslwr 315
                 +  +v +G aA  v P  g  v  a ++  +  +a+ +   + +++++ + k ++ 
  MMETSP1137-20121227|7596_1 391 RGATVLLGDAAHTVXPYFGLGVNSAFEDVAAXKTAL-DETSSVKDAVRLFSKRRAA 445
                 344899999999999999999999988755544444.2222222333333344444 PP

>> TIGR03997  mycofact_OYE_2: mycofactocin system FadH/OYE family oxidoreductase 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.4   7.5e-07   9.6e-05     371     410 ..      53      93 ..      38      99 .. 0.80

  Alignments for each domain:
  == domain 1    score: 18.7 bits;  conditional E-value: 7.5e-07
   TIGR03997 371 vtlkkarrrkkvlvvGgGPaGleaaataarrG.hrvtller 410
                 v+ + ++++ +++vvGgGPaGl+ a+  a+rG  r+t+ler
  MMETSP1137-20121227|7596_1  53 VATTGTQTEGEIVVVGGGPAGLATAIALAQRGmKRITVLER 93 
                 44455556689*********************447999998 PP

>> TIGR01316  gltA: glutamate synthase (NADPH), homotetrameric
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.1   9.1e-07   0.00012     118     168 ..      46      97 ..      42     110 .. 0.88

  Alignments for each domain:
  == domain 1    score: 18.9 bits;  conditional E-value: 9.1e-07
   TIGR01316 118 rehGieeeeekapstkkkvaviGaGpaGlavaselakkGhe.vtvfealhkp 168
                 r+  ie++  +  +t++ + v+G GpaGla a  la++G + +tv e l  p
  MMETSP1137-20121227|7596_1  46 RTYMIEQVATTGTQTEGEIVVVGGGPAGLATAIALAQRGMKrITVLERLAPP 97 
                 667788888899999************************75499*9999766 PP

>> TIGR03467  HpnE: squalene-associated FAD-dependent desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.5   1.1e-06   0.00015       1      29 [.      64      93 ..      64      96 .. 0.88

  Alignments for each domain:
  == domain 1    score: 19.1 bits;  conditional E-value: 1.1e-06
   TIGR03467  1 vvvvGgGlAGLaAAveLaraGv.rvtllEa 29
                +vvvGgG AGLa A++La++G+ r+t+lE+
  MMETSP1137-20121227|7596_1 64 IVVVGGGPAGLATAIALAQRGMkRITVLER 93
                69*******************835788886 PP

>> TIGR03219  salicylate_mono: salicylate 1-monooxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.0     0.064       8.2       3      31 ..      64      92 ..      63     111 .. 0.82
   2 ?   -4.1   0.0       7.7   9.9e+02     146     171 ..     241     266 ..     233     274 .. 0.76
   3 !   13.3   0.0     4e-05    0.0052     299     342 ..     391     434 ..     378     458 .. 0.85

  Alignments for each domain:
  == domain 1    score: 2.8 bits;  conditional E-value: 0.064
   TIGR03219  3 vaiiGGGiaGvalalelsksshlnvklfe 31
                + ++GGG aG+a a+ l+++    +++ e
  MMETSP1137-20121227|7596_1 64 IVVVGGGPAGLATAIALAQRGMKRITVLE 92
                789**************998766666555 PP

  == domain 2    score: -4.1 bits;  conditional E-value: 7.7
   TIGR03219 146 yradlligadGiksalrdyvlegagq 171
                   a l+++adG + ++ d + +  ++
  MMETSP1137-20121227|7596_1 241 LSASLMVAADGARRTIADAIAKEDET 266
                 56889999999999999988776665 PP

  == domain 3    score: 13.3 bits;  conditional E-value: 4e-05
   TIGR03219 299 hGrvaliGdaahamlphqGaGaGqGledayllarlledtkleae 342
                 +G  +l+Gdaah++ p+ G G    +ed    ++ l++t   ++
  MMETSP1137-20121227|7596_1 391 RGATVLLGDAAHTVXPYFGLGVNSAFEDVAAXKTALDETSSVKD 434
                 68899*************************99999999876544 PP

>> TIGR00292  TIGR00292: thiazole biosynthesis enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.0   2.5e-06   0.00032      20      52 ..      60      93 ..      43     114 .. 0.84

  Alignments for each domain:
  == domain 1    score: 17.8 bits;  conditional E-value: 2.5e-06
   TIGR00292 20 aesDviivGaGpsGLtaayylakeglk.vvvler 52
                 e ++++vG+Gp+GL++a  la++g+k + vler
  MMETSP1137-20121227|7596_1 60 TEGEIVVVGGGPAGLATAIALAQRGMKrITVLER 93
                57899********************983556666 PP

>> TIGR00275  TIGR00275: flavoprotein, HI0933 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.2   3.1e-06    0.0004       1      29 [.      64      93 ..      64      97 .. 0.89

  Alignments for each domain:
  == domain 1    score: 17.1 bits;  conditional E-value: 3.1e-06
   TIGR00275  1 viiiGgGaaGlmaAitaae.egakVlllEk 29
                ++++GgG+aGl +Ai++a+   +++++lE+
  MMETSP1137-20121227|7596_1 64 IVVVGGGPAGLATAIALAQrGMKRITVLER 93
                79****************956689999997 PP

>> TIGR01350  lipoamide_DH: dihydrolipoyl dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.3     4e-06   0.00052       3      30 ..      63      90 ..      61      95 .. 0.87

  Alignments for each domain:
  == domain 1    score: 16.7 bits;  conditional E-value: 4e-06
   TIGR01350  3 dvvviGgGpgGYvaAiraaqlglkvalv 30
                ++vv+GgGp+G  +Ai  aq g+k + v
  MMETSP1137-20121227|7596_1 63 EIVVVGGGPAGLATAIALAQRGMKRITV 90
                69********************996655 PP

>> TIGR01813  flavo_cyto_c: flavocytochrome c
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.1   3.9e-06    0.0005       1      32 [.      63      94 ..      63      96 .. 0.95

  Alignments for each domain:
  == domain 1    score: 16.7 bits;  conditional E-value: 3.9e-06
   TIGR01813  1 dvvvvGsGlAGlsaaleakkaglaevvvleKa 32
                ++vvvG G AGl++a+++ ++g++ + vle+ 
  MMETSP1137-20121227|7596_1 63 EIVVVGGGPAGLATAIALAQRGMKRITVLERL 94
                69***************************985 PP

>> TIGR03140  AhpF: alkyl hydroperoxide reductase, F subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.2   6.2e-06    0.0008     208     245 ..      57      94 ..      42      99 .. 0.83

  Alignments for each domain:
  == domain 1    score: 15.9 bits;  conditional E-value: 6.2e-06
   TIGR03140 208 eekekydvlvvGgGPagaaaaiyaarkGlkvalvaeri 245
                  ++++ +++vvGgGPag a ai  a++G+k   v er+
  MMETSP1137-20121227|7596_1  57 GTQTEGEIVVVGGGPAGLATAIALAQRGMKRITVLERL 94 
                 55667789**********************99998887 PP

>> TIGR03315  Se_ygfK: putative selenate reductase, YgfK subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   5.8e-06   0.00074     525     568 ..      49      93 ..      31      99 .. 0.76

  Alignments for each domain:
  == domain 1    score: 14.8 bits;  conditional E-value: 5.8e-06
   TIGR03315 525 keklekpqlksekhkvaviGaGPaGlsagyflaraGlp.vtvfek 568
                 + +  ++ +++ + ++ v+G+GPaGl+++  la+ G++ +tv+e+
  MMETSP1137-20121227|7596_1  49 MIEQVATTGTQTEGEIVVVGGGPAGLATAIALAQRGMKrITVLER 93 
                 434444455556669*********************954999997 PP

>> TIGR04018  Bthiol_YpdA: putative bacillithiol system oxidoreductase, YpdA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.2     8e-06     0.001       1      29 [.      63      92 ..      63      95 .. 0.85

  Alignments for each domain:
  == domain 1    score: 15.8 bits;  conditional E-value: 8e-06
   TIGR04018  1 dviiiGaGPiGlaaaieakkaglsyl.iie 29
                +++++G+GP Gla+ai++ ++g++ + ++e
  MMETSP1137-20121227|7596_1 63 EIVVVGGGPAGLATAIALAQRGMKRItVLE 92
                689*******************98652566 PP

>> TIGR03197  MnmC_Cterm: tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.1   9.2e-06    0.0012       2      30 ..      64      93 ..      63      99 .. 0.87

  Alignments for each domain:
  == domain 1    score: 15.8 bits;  conditional E-value: 9.2e-06
   TIGR03197  2 vavIGaGiAgaalalsLarrGvq.vtllek 30
                ++v+G+G Ag+a+a +La+rG++ +t+le+
  MMETSP1137-20121227|7596_1 64 IVVVGGGPAGLATAIALAQRGMKrITVLER 93
                89*******************954899886 PP

>> TIGR01317  GOGAT_sm_gam: glutamate synthase, NADH/NADPH, small subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.1   1.5e-05    0.0019     140     174 ..      58      93 ..      48      96 .. 0.85

  Alignments for each domain:
  == domain 1    score: 14.9 bits;  conditional E-value: 1.5e-05
   TIGR01317 140 krtGkkvavvGsGPaGlaaadqlnraG.htvtvfer 174
                 ++t  ++ vvG GPaGla+a  l++ G + +tv er
  MMETSP1137-20121227|7596_1  58 TQTEGEIVVVGGGPAGLATAIALAQRGmKRITVLER 93 
                 67777899****************9993569**998 PP

>> TIGR03169  Nterm_to_SelD: pyridine nucleotide-disulfide oxidoreductase family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.1   1.9e-05    0.0024     118     171 ..      35      87 ..      28      95 .. 0.78

  Alignments for each domain:
  == domain 1    score: 14.9 bits;  conditional E-value: 1.9e-05
   TIGR03169 118 kavpvKPleellaaweellekakaseetk.slavvGgGaagvElalalrkrlkkr 171
                 +a  ++P ++  a+   +++ a++ ++t+ +++vvGgG ag+  a+al++r  kr
  MMETSP1137-20121227|7596_1  35 HAATARPQRT--ARTYMIEQVATTGTQTEgEIVVVGGGPAGLATAIALAQRGMKR 87 
                 6677888443..445666677777788888******************9997765 PP

>> TIGR03364  HpnW_proposed: FAD dependent oxidoreductase TIGR03364
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.1   2.3e-05    0.0029       2      32 ..      63      94 ..      62      99 .. 0.89

  Alignments for each domain:
  == domain 1    score: 14.5 bits;  conditional E-value: 2.3e-05
   TIGR03364  2 dvvvvGaGivGlahAlaaarrGlk.Vtviers 32
                ++vvvG+G  Gla+A+a a+rG+k +tv+er 
  MMETSP1137-20121227|7596_1 63 EIVVVGGGPAGLATAIALAQRGMKrITVLERL 94
                69********************85499***96 PP

>> TIGR01372  soxA: sarcosine oxidase, alpha subunit family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.6   0.1   3.6e-05    0.0046     170     198 ..      63      91 ..      55      97 .. 0.86

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 3.6e-05
   TIGR01372 170 DvLvvGaGpaGLaaAraAaraGarvilvd 198
                 +++vvG+GpaGLa+A a a+ G++ i v 
  MMETSP1137-20121227|7596_1  63 EIVVVGGGPAGLATAIALAQRGMKRITVL 91 
                 789*******************9977665 PP

>> TIGR02733  desat_CrtD: C-3',4' desaturase CrtD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.1   0.1   4.8e-05    0.0062       3      32 ..      63      93 ..      61      97 .. 0.88

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 4.8e-05
   TIGR02733  3 svvviGaGiaGltaaallakrGle.vtllea 32
                ++vv+G+G aGl++a  la+rG++ +t+le 
  MMETSP1137-20121227|7596_1 63 EIVVVGGGPAGLATAIALAQRGMKrITVLER 93
                79********************954889886 PP

>> TIGR01812  sdhA_frdA_Gneg: succinate dehydrogenase or fumarate reductase, flavoprotein subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.8   0.1    0.0001     0.013       2      33 ..      64      96 ..      63     112 .. 0.86

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 0.0001
   TIGR01812  2 vvivGaGlAGlraAveaakkg.lkvaviskvyp 33
                +v+vG+G AGl +A+++a++g  ++ v+ ++ p
  MMETSP1137-20121227|7596_1 64 IVVVGGGPAGLATAIALAQRGmKRITVLERLAP 96
                89*******************667888877755 PP

>> TIGR02028  ChlP: geranylgeranyl reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.1   0.00015     0.019       3      31 ..      64      93 ..      63     103 .. 0.84
   2 ?   -1.8   0.0       1.7   2.2e+02     139     168 ..     233     262 ..     159     267 .. 0.62
   3 ?   -2.2   0.0       2.2   2.8e+02     270     308 ..     392     430 ..     369     444 .. 0.71

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 0.00015
   TIGR02028  3 vavvgggpagasaaetlakagiqtf.ller 31
                + vvgggpag ++a +la+ g++ + +ler
  MMETSP1137-20121227|7596_1 64 IVVVGGGPAGLATAIALAQRGMKRItVLER 93
                679******************987624565 PP

  == domain 2    score: -1.8 bits;  conditional E-value: 1.7
   TIGR02028 139 gasgtkktlevdavigadgansrvakeida 168
                  a+ ++  l    ++ adga   +a  i  
  MMETSP1137-20121227|7596_1 233 RATDAAFELSASLMVAADGARRTIADAIAK 262
                 233333344455678899999988888765 PP

  == domain 3    score: -2.2 bits;  conditional E-value: 2.2
   TIGR02028 270 grvalvgdaagyvtkssgegiyfaaksgrlcaeaivees 308
                 g   l+gdaa +v    g g+  a         a+ e+s
  MMETSP1137-20121227|7596_1 392 GATVLLGDAAHTVXPYFGLGVNSAFEDVAAXKTALDETS 430
                 345688*******99999999887776666656665555 PP

>> TIGR01373  soxB: sarcosine oxidase, beta subunit family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.1   0.00018     0.023      29      63 ..      60      93 ..      46      95 .. 0.88

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 0.00018
   TIGR01373 29 peydviivGgGGhGlatayylakehGitnvavlek 63
                +e ++++vGgG  Glata  la+  G+ +++vle+
  MMETSP1137-20121227|7596_1 60 TEGEIVVVGGGPAGLATAIALAQ-RGMKRITVLER 93
                56689****************97.6********96 PP

>> TIGR01816  sdhA_forward: succinate dehydrogenase, flavoprotein subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.1   0.00016      0.02       4      36 ..      63      96 ..      60     112 .. 0.83

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 0.00016
   TIGR01816  4 dvvvvGaGGaGlraalelakeglk.tavvtklfP 36
                ++vvvG+G aGl +a+ la++g+k ++v+ +l P
  MMETSP1137-20121227|7596_1 63 EIVVVGGGPAGLATAIALAQRGMKrITVLERLAP 96
                689*******************972567777765 PP

>> TIGR03378  glycerol3P_GlpB: glycerol-3-phosphate dehydrogenase, anaerobic, B subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.2    0.0002     0.025       3      28 ..      64      89 ..      63      93 .. 0.89

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 0.0002
   TIGR03378  3 viiiGgGlaGlscalrlaeaGkktai 28
                ++++GgG aGl++a++la++G+k + 
  MMETSP1137-20121227|7596_1 64 IVVVGGGPAGLATAIALAQRGMKRIT 89
                79*******************99765 PP

>> TIGR01318  gltD_gamma_fam: glutamate synthase, small subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.1    0.0002     0.026     139     172 ..      59      93 ..      49      96 .. 0.82

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 0.0002
   TIGR01318 139 ktgkrvaviGaGpaGlacadvlaraGvk.vvvfdr 172
                 +t+  + v+G+GpaGla a  la+ G+k ++v +r
  MMETSP1137-20121227|7596_1  59 QTEGEIVVVGGGPAGLATAIALAQRGMKrITVLER 93 
                 5677899****************999863567666 PP

>> TIGR01292  TRX_reduct: thioredoxin-disulfide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.2   0.00031      0.04       2      29 ..      63      90 ..      62      97 .. 0.82
   2 ?   -3.5   0.0         6   7.7e+02      97     135 ..     187     221 ..     169     223 .. 0.58

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 0.00031
   TIGR01292  2 dviiiGaGpaGltaaiYaaranlktlli 29
                +++++G+GpaGl++ai  a+ ++k + +
  MMETSP1137-20121227|7596_1 63 EIVVVGGGPAGLATAIALAQRGMKRITV 90
                589*************999888886643 PP

  == domain 2    score: -3.5 bits;  conditional E-value: 6
   TIGR01292  97 keykakaviiAtGakarklgikgeeeflgrGvsyCavCD 135
                 ++  a ++ +  G +   ++ + e+    + v +C++CD
  MMETSP1137-20121227|7596_1 187 RTDYAXSINVMHGVEVDSVSWPTED----KVVLSCSMCD 221
                 5555555555555555555555555....4477899999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (613 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       257  (0.0626524); expected 82.0 (0.02)
Passed bias filter:                      184  (0.0448562); expected 82.0 (0.02)
Passed Vit filter:                        68  (0.0165773); expected 4.1 (0.001)
Passed Fwd filter:                        32  (0.00780107); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              32  [number of targets reported over threshold]
# CPU time: 0.71u 0.15s 00:00:00.86 Elapsed: 00:00:00.74
# Mc/sec: 1093.37
//
Query:       MMETSP1137-20121227|7597_1  [L=115]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (115 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        74  (0.01804); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.15s 00:00:00.29 Elapsed: 00:00:00.39
# Mc/sec: 389.20
//
Query:       MMETSP1137-20121227|7598_1  [L=1365]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1365 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       228  (0.0555826); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.79u 0.19s 00:00:00.98 Elapsed: 00:00:00.88
# Mc/sec: 2047.33
//
Query:       MMETSP1137-20121227|7599_1  [L=888]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.015   12.2   0.0      0.034   11.0   0.0    1.5  1  TIGR02483 PFK_mixed: phosphofructokinase
       0.21    9.4  16.8       0.52    8.1  11.7    1.6  1  TIGR03499 FlhF: flagellar biosynthesis protein FlhF
        1.3    4.4  23.5          2    3.8  16.3    1.1  1  TIGR02168 SMC_prok_B: chromosome segregation protein SMC
        2.2    4.3   4.8          3    3.8   3.4    1.1  1  TIGR00934 2a38euk: potassium uptake protein, Trk family
        2.4    4.3  22.1        3.7    3.7  15.3    1.2  1  TIGR02442 Cob-chelat-sub: cobaltochelatase subunit


Domain annotation for each model (and alignments):
>> TIGR02483  PFK_mixed: phosphofructokinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   4.2e-05     0.034     212     304 ..     763     857 ..     750     863 .. 0.84

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 4.2e-05
   TIGR02483 212 ergkkfaivvvaegakpkegelalkekakdaageerlgG..igkalaeeiekrlg.keaRavvLghlqRGgspsafDRvlatrfgvkavdlveegk 304
                 ++g+++a v++a + +p ++e+++++ + + a+ ++l G   g+++ +++ +r++  e Ra  L+ ++  +++s + R + +r+gv+ +d+ e ++
  MMETSP1137-20121227|7599_1 763 KHGSNVAEVMLAKA-TPAQVEYVTDSIVANDADLSQLMGdaFGNYVLQTLLRRIEdSERRARALAKVRAATTASNYGRSILSRLGVADIDAAETDE 857
                 56777777888865.56777888888888888888887755799999999998875899*******************************998765 PP

>> TIGR03499  FlhF: flagellar biosynthesis protein FlhF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1  11.7   0.00064      0.52      77     174 ..     256     354 ..     235     374 .. 0.47

  Alignments for each domain:
  == domain 1    score: 8.1 bits;  conditional E-value: 0.00064
   TIGR03499  77 klskaeekeek.ekeaeekaaeaaqeaekkleeaeeelrkelkalkellekqlselaleeedperakllkklleagvseelarelleklkekedaeear 174
                 ++++ + ++++ ++++++++++++q++++++++++++  +  ++l+++ ++q +++++   ++ r+ +  k   ++vs+ l r+ +e ++e+++   ++
  MMETSP1137-20121227|7599_1 256 PRRARKPNQQQqQQQQQQQQQQQQQQQQQQQQQQQQQNNQSHQQLHQHYQHQPHQAHQPLASQARKGARLKARGREVSALLHRAPAEAAQETSQVVMIQ 354
                 222222111110112222222222222222222334445555555555555555554444455555555555555666666666666666654444444 PP

>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8  16.3    0.0024         2     386     489 ..     257     360 ..     245     371 .. 0.76

  Alignments for each domain:
  == domain 1    score: 3.8 bits;  conditional E-value: 0.0024
   TIGR02168 386 sevaeleeqlaslnaelerleaeleqleerrerlkqeieelekkleeaeaelkelqeeleeleeeleeleeelerleealeeleeeleeaeqalqkaeeelaql 489
                 ++ ++ ++q++++++++++++++ +q ++++++++q+++++++  ++ +++ ++ ++ l+++ ++ + l+++ +++ + l+++ +e ++ ++++   ++++aq+
  MMETSP1137-20121227|7599_1 257 RRARKPNQQQQQQQQQQQQQQQQQQQQQQQQQQQQQNNQSHQQLHQHYQHQPHQAHQPLASQARKGARLKARGREVSALLHRAPAEAAQETSQVVMIQADMAQH 360
                 45555666666666666666777777777777777777777777778888889999999999999999999999999999999999998888888888888775 PP

>> TIGR00934  2a38euk: potassium uptake protein, Trk family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   3.4    0.0037         3     263     332 ..     263     311 ..     216     388 .. 0.49

  Alignments for each domain:
  == domain 1    score: 3.8 bits;  conditional E-value: 0.0037
   TIGR00934 263 immlqekheatakirdkiseanslaaesdeessesrriqekikrrlstssieknsqqnltrlaktksfdd 332
                 +++ q+++++++                     + ++ q++ +++  +++ +++s+q+l++ ++ +  + 
  MMETSP1137-20121227|7599_1 263 NQQQQQQQQQQQ---------------------QQQQQQQQQQQQQQQQQQNNQSHQQLHQHYQHQPHQA 311
                 222221111111.....................1111122222222222222222222222222222222 PP

>> TIGR02442  Cob-chelat-sub: cobaltochelatase subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7  15.3    0.0045       3.7     308     377 ..     256     322 ..     247     371 .. 0.53

  Alignments for each domain:
  == domain 1    score: 3.7 bits;  conditional E-value: 0.0045
   TIGR02442 308 hRrrrkpfeeeqekeekkleekkeeakpdeekedeseekekeeskkqe.eeepgkddekeedekeeaeeea 377
                 +Rr rkp +++q++++++++++++++++++++++++++++++++ +q+ +++p++     +++ +++  + 
  MMETSP1137-20121227|7599_1 256 PRRARKPNQQQQQQQQQQQQQQQQQQQQQQQQQQQQQNNQSHQQLHQHyQHQPHQ----AHQPLASQARKG 322
                 7888999988866666666666555555555555554444444444443223322....222222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (888 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       687  (0.167479); expected 82.0 (0.02)
Passed bias filter:                      287  (0.0699659); expected 82.0 (0.02)
Passed Vit filter:                        83  (0.020234); expected 4.1 (0.001)
Passed Fwd filter:                        16  (0.00390054); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 1.21u 0.22s 00:00:01.43 Elapsed: 00:00:00.87
# Mc/sec: 1347.20
//
Query:       MMETSP1137-20121227|7600_1  [L=95]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
          1    5.9   5.8          1    5.8   4.0    1.1  1  TIGR02927 SucB_Actino: 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase
          8    4.7   9.1         13    4.1   6.3    1.5  1  TIGR02811 formate_TAT: formate dehydrogenase region TAT target


Domain annotation for each model (and alignments):
>> TIGR02927  SucB_Actino: 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   4.0   0.00051         1     310     332 ..       3      25 ..       1      55 [. 0.59

  Alignments for each domain:
  == domain 1    score: 5.8 bits;  conditional E-value: 0.00051
   TIGR02927 310 akeaaaaeaaaaapaapaaakka 332
                 a++aaaa aa+aapa++aa+  +
  MMETSP1137-20121227|7600_1   3 AAAAAAAAAASAAPASAAATAVT 25 
                 44455555555555555443333 PP

>> TIGR02811  formate_TAT: formate dehydrogenase region TAT target
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   6.3    0.0063        13      19      40 ..       3      24 ..       1      39 [. 0.58

  Alignments for each domain:
  == domain 1    score: 4.1 bits;  conditional E-value: 0.0063
   TIGR02811 19 avgaaagavaaatgrvasasaa 40
                a++aaa+a+a a +  a+a+a+
  MMETSP1137-20121227|7600_1  3 AAAAAAAAAASAAPASAAATAV 24
                3444444444444444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (95 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       164  (0.0399805); expected 82.0 (0.02)
Passed bias filter:                      133  (0.0324232); expected 82.0 (0.02)
Passed Vit filter:                        19  (0.00463189); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.16u 0.16s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 432.38
//
Query:       MMETSP1137-20121227|7602_1  [L=591]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.6e-59  197.2   0.0    5.9e-27   92.3   0.0    3.1  3  TIGR01810 betA: choline dehydrogenase
    9.2e-46  154.6   0.0      1e-20   72.0   0.0    3.1  3  TIGR03970 Rv0697: dehydrogenase, Rv0697 family
    1.3e-05   21.9   1.2     0.0053   13.3   0.0    2.1  2  TIGR01813 flavo_cyto_c: flavocytochrome c
    4.6e-05   21.1   0.1    6.8e-05   20.5   0.1    1.2  1  TIGR02032 GG-red-SF: geranylgeranyl reductase family
     0.0023   15.0   0.1     0.0043   14.2   0.1    1.3  1  TIGR00292 TIGR00292: thiazole biosynthesis enzyme
     0.0048   13.7   0.0       0.48    7.0   0.0    2.4  3  TIGR02462 pyranose_ox: pyranose oxidase
      0.006   13.7   0.2     0.0095   13.0   0.1    1.3  1  TIGR00745 apbA_panE: 2-dehydropantoate 2-reductase
     0.0066   13.4   0.2     0.0096   12.8   0.2    1.2  1  TIGR03197 MnmC_Cterm: tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain
     0.0082   13.3   2.3      0.011   12.8   1.6    1.2  1  TIGR03467 HpnE: squalene-associated FAD-dependent desaturase
     0.0091   12.9   0.0      0.013   12.4   0.0    1.2  1  TIGR02352 thiamin_ThiO: glycine oxidase ThiO
  ------ inclusion threshold ------
      0.011   12.7   0.3      0.018   12.0   0.2    1.2  1  TIGR01790 carotene-cycl: lycopene cyclase family protein
      0.018   11.7   0.0      0.029   11.0   0.0    1.2  1  TIGR01317 GOGAT_sm_gam: glutamate synthase, NADH/NADPH, small subunit
      0.022   11.4   0.0      0.031   10.9   0.0    1.2  1  TIGR01988 Ubi-OHases: ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family
      0.041   10.6   0.1      0.069    9.9   0.0    1.2  1  TIGR00031 UDP-GALP_mutase: UDP-galactopyranose mutase
      0.058   10.2   0.2      0.084    9.7   0.1    1.2  1  TIGR02023 BchP-ChlP: geranylgeranyl reductase
      0.059   10.0   2.3       0.14    8.8   1.7    1.5  2  TIGR00275 TIGR00275: flavoprotein, HI0933 family
      0.059   10.2   0.3      0.089    9.6   0.2    1.2  1  TIGR03378 glycerol3P_GlpB: glycerol-3-phosphate dehydrogenase, anaerobic, B subunit
      0.066    8.7   0.4      0.095    8.2   0.2    1.1  1  TIGR01372 soxA: sarcosine oxidase, alpha subunit family


Domain annotation for each model (and alignments):
>> TIGR01810  betA: choline dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.4   0.0   8.4e-05     0.019       1      39 [.      42      80 ..      42     104 .. 0.78
   2 !   89.9   0.0   1.4e-28   3.2e-26     172     294 ..     255     380 ..     215     389 .. 0.86
   3 !   92.3   0.0   2.6e-29   5.9e-27     384     528 ..     449     588 ..     419     591 .] 0.83

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 8.4e-05
   TIGR01810  1 dyiiiGaGsaGsvlatrlsedvsnsvlvleaGgs.dyrfd 39
                dyii G+G aG ++a+ l++ +++ v+vle G   d  +d
  MMETSP1137-20121227|7602_1 42 DYIIAGGGGAGCAVAGMLAKAGKK-VVVLEEGPEdDTAHD 80
                9******************98875.667777755155555 PP

  == domain 2    score: 89.9 bits;  conditional E-value: 1.4e-28
   TIGR01810 172 lnGfkqeGfGpldrtvtrGrrvsaarayldpalk.rknlevrtralvdkivfe.gkratGvefkkgg.ikervkankevilsagainspkllqlsGiGdaehlkelgielkvelpGvGenlqdhle 294
                  n     Gf  + r+     r+s+ara+l+p ++  +n+evr  + v+k++++ +k++tGve+   +  + +  a k+vils g+i+sp++++lsGiG+ + l++++i++++elpGvG+nl++hl 
  MMETSP1137-20121227|7602_1 255 ENNIGVAGFTEFTRNSIYTERISSARAFLTPEIRaLPNIEVRALSKVTKLIVDeNKKCTGVEYTSYDgTPRKLYAGKDVILSMGSIDSPHMMMLSGIGPRDELEKFDIPVVHELPGVGKNLDNHLL 380
                 46666789**********************9875269*******99999988627789*****987659999****************************************************95 PP

  == domain 3    score: 92.3 bits;  conditional E-value: 2.6e-29
   TIGR01810 384 sksrGhvkikskdpkekpailfnylshe..edkeefreairvtr.eilkqkaldlyrGreispGeevqtdeeidefvredaetalhpcgtckmGakddemsvvdpetrvhGleglrvvdasilprittGnlnapsimigekaadiirG 528
                  ksrG++++ks dp++ p++ + y   e  ed e  +e i   r ++l     d++   ei pGe      ++d +v++ a + +h +gtckmG+++d ++vvd++ rvhG+ +lr+vdasi p++ + n ++p+i+ig +aa ii+ 
  MMETSP1137-20121227|7602_1 449 GKSRGEIRLKSADPNDFPELYMGYYEGEgaEDIEVIKENIERFRtDVLAH--TDEF--YEIGPGEGT----DLDYWVKRTAGSYWHWSGTCKMGPASDSLAVVDSKLRVHGISNLRIVDASIQPNVANVNTQSPAILIGYHAAXIILK 588
                 69*********************997653366666666664444133332..3444..69****964....5899********************************************************************99975 PP

>> TIGR03970  Rv0697: dehydrogenase, Rv0697 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   0.1   3.6e-05    0.0081       2      39 ..      42      78 ..      41      94 .. 0.86
   2 !   65.9   0.0   3.1e-21     7e-19     178     291 ..     260     378 ..     227     390 .. 0.82
   3 !   72.0   0.0   4.6e-23     1e-20     353     486 ..     450     586 ..     443     587 .. 0.93

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 3.6e-05
   TIGR03970  2 DvlvvGaGsaGsvlaarLsedpsatvtvleaGpgyldp 39
                D ++ G+G aG+ +a  L++  +++v+vle Gp   ++
  MMETSP1137-20121227|7602_1 42 DYIIAGGGGAGCAVAGMLAK-AGKKVVVLEEGPEDDTA 78
                899*************9975.7999*******987665 PP

  == domain 2    score: 65.9 bits;  conditional E-value: 3.1e-21
   TIGR03970 178 saGvgavPlnvddgrrvstavayLlPalk.rpnLrveaetrvvrilfsat.ravGvevlg.dgaaetlradr.vvlcaGavesaalLllsGvGpaeqLraaGvavvldlP.vGsdtvDh 291
                  aG ++   n    +r+s+a a+L P ++  pn++v+a ++v+++ ++++ +  Gve+++ dg++++l+a++ v+l+ G+++s+++++lsG+Gp ++L++  ++vv +lP vG+++ +h
  MMETSP1137-20121227|7602_1 260 VAGFTEFTRNSIYTERISSARAFLTPEIRaLPNIEVRALSKVTKLIVDENkKCTGVEYTSyDGTPRKLYAGKdVILSMGSIDSPHMMMLSGIGPRDELEKFDIPVVHELPgVGKNLDNH 378
                 346666777777889***********98626*************9998762679***9865899******876999***************************************9988 PP

  == domain 3    score: 72.0 bits;  conditional E-value: 4.6e-23
   TIGR03970 353 ksrGeirlasadpaaapviehryd..ssaaDrealreg.aalaeeLleaveastllepavkeseaswvrarlatsqhlsGsarmgaeddpaavvDarCrvrGvegLavvDtsilPaitsrGPhativmvaeraaefl 486
                 ksrGeirl+sadp++ p +   y   + a+D e ++e  +++ +++l+++++   + p   +  + wv+   +   h sG+++mg   d+ avvD++ rv+G+++L +vD+si P ++    ++ +++++  aa ++
  MMETSP1137-20121227|7602_1 450 KSRGEIRLKSADPNDFPELYMGYYegEGAEDIEVIKENiERFRTDVLAHTDEFYEIGPGEGTDLDYWVKRTAGSYWHWSGTCKMGPASDSLAVVDSKLRVHGISNLRIVDASIQPNVANVNTQSPAILIGYHAAXII 586
                 79***************9998886224699*****99735799**************************999999********************************************************999887 PP

>> TIGR01813  flavo_cyto_c: flavocytochrome c
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.5   0.8    0.0028      0.64       2      31 ..      43      71 ..      42      74 .. 0.92
   2 !   13.3   0.0   2.3e-05    0.0053      79     191 ..     228     340 ..     212     354 .. 0.76

  Alignments for each domain:
  == domain 1    score: 6.5 bits;  conditional E-value: 0.0028
   TIGR01813  2 vvvvGsGlAGlsaaleakkaglaevvvleK 31
                 ++ G G+AG + a  + kag ++vvvle 
  MMETSP1137-20121227|7602_1 43 YIIAGGGGAGCAVAGMLAKAG-KKVVVLEE 71
                5999*****************.******95 PP

  == domain 2    score: 13.3 bits;  conditional E-value: 2.3e-05
   TIGR01813  79 dpelvkklaeesadavdwlkd.evklkldklaqlGGhsvkRahrpkggaasGaeivqklskkakkegvelrlnskvedlikddqgqvtGvkvke.kgkkikikaakaVvlatGGf 191
                 + +++    + +a+av++ ++ +  ++++++  +G ++  R  + +++ +s   + ++  +++   ++e+r  skv++li d++ + tGv++++  g+ +k+ a k V+l+ G  
  MMETSP1137-20121227|7602_1 228 ESKILAAAIKGGAQAVEYGRNmAAVAHENNIGVAGFTEFTRNSIYTERISSARAFLTPEIRAL--PNIEVRALSKVTKLIVDENKKCTGVEYTSyDGTPRKLYAGKDVILSMGSI 340
                 566677777778888888887777777777777888888888888887777777777655555..46889999*******************9956677999********99965 PP

>> TIGR02032  GG-red-SF: geranylgeranyl reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   0.1     3e-07   6.8e-05       2      32 ..      42      72 ..      41     100 .. 0.94

  Alignments for each domain:
  == domain 1    score: 20.5 bits;  conditional E-value: 3e-07
   TIGR02032  2 DvvvvGaGpaGssaAlrlakkGlrVlllekk 32
                D ++ G+G aG+++A  lak+G +V++le+ 
  MMETSP1137-20121227|7602_1 42 DYIIAGGGGAGCAVAGMLAKAGKKVVVLEEG 72
                89***************************85 PP

>> TIGR00292  TIGR00292: thiazole biosynthesis enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.1   1.9e-05    0.0043      20      52 ..      39      71 ..      34      72 .. 0.92

  Alignments for each domain:
  == domain 1    score: 14.2 bits;  conditional E-value: 1.9e-05
   TIGR00292 20 aesDviivGaGpsGLtaayylakeglkvvvler 52
                 + D ii+G+G +G + a +lak+g kvvvle 
  MMETSP1137-20121227|7602_1 39 TDPDYIIAGGGGAGCAVAGMLAKAGKKVVVLEE 71
                56799**************************95 PP

>> TIGR02462  pyranose_ox: pyranose oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.0   0.0    0.0021      0.48       2      38 ..      42      78 ..      41     103 .. 0.85
   2 ?   -3.5   0.0       3.4   7.8e+02     239     293 ..     301     352 ..     297     387 .. 0.60
   3 ?    3.9   0.0     0.019       4.3     480     528 ..     522     571 ..     519     588 .. 0.75

  Alignments for each domain:
  == domain 1    score: 7.0 bits;  conditional E-value: 0.0021
   TIGR02462  2 dvfiaGsGPigatyakllvdaglkvvmveiGaadsfl 38
                d +iaG G  g++ a  l +ag kvv++e G  d+++
  MMETSP1137-20121227|7602_1 42 DYIIAGGGGAGCAVAGMLAKAGKKVVVLEEGPEDDTA 78
                789****************************988763 PP

  == domain 2    score: -3.5 bits;  conditional E-value: 3.4
   TIGR02462 239 vtklvlketeekeveaalvrdllaserdkkiva.ksfvlaaGavataqilvnsgis 293
                 vtkl+++e  +k+ + ++      +   +k++a k  +l+ G++ ++ +++ sgi+
  MMETSP1137-20121227|7602_1 301 VTKLIVDE--NKKCTGVEYTSYDGTP--RKLYAgKDVILSMGSIDSPHMMMLSGIG 352
                 55666555..4444444444333333..3344415566777888888888888876 PP

  == domain 3    score: 3.9 bits;  conditional E-value: 0.019
   TIGR02462 480 GlalhlaGttriGldeq.ktvadtdskvfnfknlyvgGnGvietafaanP 528
                 G   h +Gt ++G  ++  +v+d++ +v++ +nl +  + + ++    n 
  MMETSP1137-20121227|7602_1 522 GSYWHWSGTCKMGPASDsLAVVDSKLRVHGISNLRIVDASIQPNVANVNT 571
                 556799*******7655389**************9887766665555555 PP

>> TIGR00745  apbA_panE: 2-dehydropantoate 2-reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   0.1   4.2e-05    0.0095       2      31 ..      43      72 ..      42      82 .. 0.88

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 4.2e-05
   TIGR00745  2 iailGaGAvGsllgakLaragadVtllars 31
                + i+G G+ G++++++La+ag++V++l  +
  MMETSP1137-20121227|7602_1 43 YIIAGGGGAGCAVAGMLAKAGKKVVVLEEG 72
                679**********************99765 PP

>> TIGR03197  MnmC_Cterm: tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.8   0.2   4.2e-05    0.0096       3      30 ..      44      71 ..      42      81 .. 0.91

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 4.2e-05
   TIGR03197  3 avIGaGiAgaalalsLarrGvqvtllek 30
                ++ G+G Ag+a+a  La++G +v +le+
  MMETSP1137-20121227|7602_1 44 IIAGGGGAGCAVAGMLAKAGKKVVVLEE 71
                899***********************97 PP

>> TIGR03467  HpnE: squalene-associated FAD-dependent desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.8   1.6     5e-05     0.011       2      31 ..      44      73 ..      43      75 .. 0.94

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 5e-05
   TIGR03467  2 vvvGgGlAGLaAAveLaraGvrvtllEarr 31
                ++ GgG AG+a A  La+aG +v +lE ++
  MMETSP1137-20121227|7602_1 44 IIAGGGGAGCAVAGMLAKAGKKVVVLEEGP 73
                699************************987 PP

>> TIGR02352  thiamin_ThiO: glycine oxidase ThiO
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.4   0.0   5.8e-05     0.013       2      61 ..      44     102 ..      43     113 .. 0.74

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 5.8e-05
   TIGR02352   2 lviGgGviGlsvAveLakrghkvtllekdevgsgAskaAaGmLapvaEveiaeeallrLa 61 
                 +++GgG  G +vA  Lak+g+kv +le+++    A     G   p      ++++++++a
  MMETSP1137-20121227|7602_1  44 IIAGGGGAGCAVAGMLAKAGKKVVVLEEGPEDDTAHDSVLGEIVPYNLA-PQQNTFFQFA 102
                 799*************************984554444433555554333.3566666665 PP

>> TIGR01790  carotene-cycl: lycopene cyclase family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.2   7.7e-05     0.018       1      33 [.      42      74 ..      42      81 .. 0.90

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 7.7e-05
   TIGR01790  1 DliviGgGlAglaiAlelakpglrvqlieaapk 33
                D i+ GgG Ag+a+A  lak+g +v+++e  p+
  MMETSP1137-20121227|7602_1 42 DYIIAGGGGAGCAVAGMLAKAGKKVVVLEEGPE 74
                889*************************98776 PP

>> TIGR01317  GOGAT_sm_gam: glutamate synthase, NADH/NADPH, small subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00013     0.029     137     174 ..      34      71 ..      20      78 .. 0.87

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 0.00013
   TIGR01317 137 ppkkrtGkkvavvGsGPaGlaaadqlnraGhtvtvfer 174
                 pp+  t     + G G aG a a +l++aG++v v e 
  MMETSP1137-20121227|7602_1  34 PPNAITDPDYIIAGGGGAGCAVAGMLAKAGKKVVVLEE 71 
                 6777788888899**********************995 PP

>> TIGR01988  Ubi-OHases: ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00014     0.031       1      39 [.      42      79 ..      42     109 .. 0.86

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 0.00014
   TIGR01988  1 divIvGgGlvGlalAlaLassadlkvalveakaaekaks 39
                d +I+GgG +G a+A  La+ + +kv ++e+ ++++ ++
  MMETSP1137-20121227|7602_1 42 DYIIAGGGGAGCAVAGMLAKAG-KKVVVLEEGPEDDTAH 79
                779****************766.*******998877554 PP

>> TIGR00031  UDP-GALP_mutase: UDP-galactopyranose mutase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.0    0.0003     0.069       3      32 ..      42      71 ..      41      74 .. 0.96

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 0.0003
   TIGR00031  3 dyiivGaGlsGivlaeilaklnkrvlvvek 32
                dyii G G +G  +a +lak +k+v+v+e 
  MMETSP1137-20121227|7602_1 42 DYIIAGGGGAGCAVAGMLAKAGKKVVVLEE 71
                8***************************95 PP

>> TIGR02023  BchP-ChlP: geranylgeranyl reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.1   0.00037     0.084       2      31 ..      42      71 ..      41      75 .. 0.92

  Alignments for each domain:
  == domain 1    score: 9.7 bits;  conditional E-value: 0.00037
   TIGR02023  2 dvlviGggpsGaaaaetLakagieviller 31
                d ++ Ggg +G a a +Lakag++v++le 
  MMETSP1137-20121227|7602_1 42 DYIIAGGGGAGCAVAGMLAKAGKKVVVLEE 71
                66899**********************995 PP

>> TIGR00275  TIGR00275: flavoprotein, HI0933 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   1.7   0.00059      0.14       2      30 ..      44      72 ..      43      75 .. 0.93
   2 ?   -3.4   0.0       3.1   7.1e+02     121     164 ..     293     344 ..     281     345 .. 0.65

  Alignments for each domain:
  == domain 1    score: 8.8 bits;  conditional E-value: 0.00059
   TIGR00275  2 iiiGgGaaGlmaAitaaeegakVlllEkn 30
                ii GgG aG   A ++a++g+kV++lE+ 
  MMETSP1137-20121227|7602_1 44 IIAGGGGAGCAVAGMLAKAGKKVVVLEEG 72
                899************************86 PP

  == domain 2    score: -3.4 bits;  conditional E-value: 3.1
   TIGR00275 121 vevlteskvksi..kkeeekfevet......ekkeleakkvilatGgksypk 164
                 +ev+  skv+++  ++++++++ve        +k ++ k vil++G+   p+
  MMETSP1137-20121227|7602_1 293 IEVRALSKVTKLivDENKKCTGVEYtsydgtPRKLYAGKDVILSMGSIDSPH 344
                 5666666676655556666677766433222357788899999999876665 PP

>> TIGR03378  glycerol3P_GlpB: glycerol-3-phosphate dehydrogenase, anaerobic, B subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.2   0.00039     0.089       2      32 ..      42      72 ..      41      79 .. 0.95

  Alignments for each domain:
  == domain 1    score: 9.6 bits;  conditional E-value: 0.00039
   TIGR03378  2 DviiiGgGlaGlscalrlaeaGkktaiiaaG 32
                D ii GgG aG + a  la+aGkk++++ +G
  MMETSP1137-20121227|7602_1 42 DYIIAGGGGAGCAVAGMLAKAGKKVVVLEEG 72
                889*************************998 PP

>> TIGR01372  soxA: sarcosine oxidase, alpha subunit family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   0.2   0.00042     0.095     170     202 ..      42      74 ..      33      85 .. 0.90

  Alignments for each domain:
  == domain 1    score: 8.2 bits;  conditional E-value: 0.00042
   TIGR01372 170 DvLvvGaGpaGLaaAraAaraGarvilvdeqae 202
                 D +++G+G aG a A + a+aG +v++++e +e
  MMETSP1137-20121227|7602_1  42 DYIIAGGGGAGCAVAGMLAKAGKKVVVLEEGPE 74 
                 889*************************99765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (591 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       182  (0.0443686); expected 82.0 (0.02)
Passed bias filter:                      175  (0.0426621); expected 82.0 (0.02)
Passed Vit filter:                        63  (0.0153584); expected 4.1 (0.001)
Passed Fwd filter:                        18  (0.0043881); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              18  [number of targets reported over threshold]
# CPU time: 0.62u 0.17s 00:00:00.79 Elapsed: 00:00:00.54
# Mc/sec: 1444.55
//
Query:       MMETSP1137-20121227|7603_1  [L=168]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (168 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       111  (0.02706); expected 82.0 (0.02)
Passed bias filter:                      100  (0.0243784); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.11s 00:00:00.28 Elapsed: 00:00:00.30
# Mc/sec: 739.14
//
Query:       MMETSP1137-20121227|7604_1  [L=1011]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
          0 1409.3   0.0          0 1409.1   0.0    1.0  1  TIGR00461 gcvP: glycine dehydrogenase
      0.001   15.8   0.0      0.012   12.3   0.0    2.1  2  TIGR03812 tyr_de_CO2_Arch: tyrosine decarboxylase MnfA


Domain annotation for each model (and alignments):
>> TIGR00461  gcvP: glycine dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ! 1409.1   0.0         0         0       1     939 []      55     994 ..      55     994 .. 0.98

  Alignments for each domain:
  == domain 1    score: 1409.1 bits;  conditional E-value: 0
   TIGR00461   1 rhlGpdeaeqkkmlktlGfddlnalieqlvpkdirlarplkleapak...eyealaelkkiasknkkvksyiGkGyyatilppviqrnllenpgwytaytpyqpeisqGrleallnfqtvvldltGlevanaslldegtaaaeamalsfrvskkkankfvvakdvhpqtlevvktraeplgievivddaskvkkavdvlGvllqypatdGeildykalidelksrkalvsvaadllaltlltppgklGadivlGsaqrfGvplGyGGphaaffavkdeykrklpGrivGvskdalGntalrlalqtreqhirrdkatsnictaqvllanvaslyavyhGpkGlkniarrifrltsilaaglkrknyelrnktyfdtltvevgekaase.vlkaaeeaeinlravvltevgialdetttkedvldllkvlagkdnlglssee.l.sedvansfpaellrddeilrdevfnryhsetellrylhrleskdlalnqsmiplGsctmklnataemlpitwpefaeihpfapaeqveGykeliaqlekwlveitGfdaislqpnsGaqGeyaGlrvirsyhesrgeehrniclipasahGtnpasaamaGlkvvpvkcdkeGnidlvdlkakaekagdelaavmvtypstyGvfeetirevidivhrfGGqvyldGanmnaqvGltspgdlGadvchlnlhktfsiphGGGGpgmgpigvkshlapflpktdlvsvvelegesksigavsaapyGsasilpisymyikmmGaeGlkkasevailnanylakrlkdaykilfvgrdervahecildlrelkekagiealdvakrlldyGfhaptlsfpvaGtlmveptesesleeldrfidamiaikeeidavkaGeiklednilknaphslqslivaewadpysreeaaypapvlkyfkfwptvarlddtyGdrnlvcsc 939
                 rh+Gp e++ + m +t+G+++l++l+e+ vp +irl+r l l+  ++   e +alaelk+ias+nk++ks+iG+Gy + ++p vi+rn+lenpgwyt ytpyqpe+sqGrle+l+nfqt+v dltG+e+ n+sllde+taaaeama+ ++ + +k+ kf+v++ vhpqtl v++tra   gi v+ +d  +     d+ G+l+qypatdG++++y  + d+l++  a ++ aadll+lt ltppg+ Gadi +G aqrfGvp+GyGGpha f+a+ + + rk+pGri+G+s da+G++a r+a+qtreqhirrdkatsnictaq+llan+a+ly++yhGp Gl+ ia    r +++l  gl + +    ++ +fdt++v    +++++ v  a  + ++n+r ++ +++ +a dett+ +d+  +++ ++     ++s++  l + + a  +p+el r++e+++++vf  + se ++lry+ +l +kd++l ++miplGsctmkln+taem+pitwpe+  ihpfapa q++Gy eli +le+ l+eitGf ++slqpnsGa Gey+Glr ir y+es+ge+hrn+clip+sahGtnpasaam+G+++vp+ cd+ Gnid+ dlkakaek+ d+l+a+mvtypst+Gvfeeti +++++vh+ GGqvy+dGanmnaqvGl+ pg++Gadvchlnlhktf+iphGGGGpg gpigv +hl+pflp + +v      g++ s g v+aap+Gsasilpis+my  mmG++Glk+a+evailnany+a+rl+ +yk+l++g+++ +ahe+ildlre+k+ ag+ + dvakrl dy fhapt+s+pvaGt+mveptese++ eldrf++ami+i++ei ++ +G  + +dn+lknaph++  +++ +w+ pysr+ aa+p+p l+  kfwpt +r++dtyGdrnlvcsc
  MMETSP1137-20121227|7604_1  55 RHVGPRESDLEAMCHTVGVSSLDELMEKTVPANIRLNRDLDLGKYSEglsESDALAELKRIASQNKVFKSFIGQGYHDCKTPTVILRNVLENPGWYTQYTPYQPEVSQGRLESLMNFQTMVADLTGMEMCNSSLLDEATAAAEAMAMIYGAA-SKKSKFFVDERVHPQTLAVLQTRAAGHGITVVTGDYASYAVPDDLCGALVQYPATDGSVHNYAGFADKLHKAGAKLAAAADLLSLTKLTPPGEWGADITVGCAQRFGVPFGYGGPHAGFLATSQVFARKMPGRIIGLSIDAQGKPAYRMAMQTREQHIRRDKATSNICTAQALLANIAALYGMYHGPDGLRAIASHCQRSAAVLRHGLLKLGCTSPDAPFFDTVRVSPPPGMTADeVIAAGXALGVNFRKLDDSSLCLACDETTSSADIALVWQAFNKGTAPPFSVDDaLaTAEPAAPIPSELARTSEFMTHPVFSSHQSEHQMLRYIFKLANKDISLVHCMIPLGSCTMKLNSTAEMMPITWPEINGIHPFAPATQAKGYAELIRSLEELLCEITGFPGMSLQPNSGASGEYSGLRTIRAYQESKGEGHRNVCLIPVSAHGTNPASAAMSGMRIVPIGCDNAGNIDVADLKAKAEKHKDNLSALMVTYPSTHGVFEETIVDICNVVHENGGQVYMDGANMNAQVGLCGPGYFGADVCHLNLHKTFCIPHGGGGPGIGPIGVAAHLKPFLPSHPVVP----MGGESSFGCVAAAPWGSASILPISWMYCVMMGSKGLKRATEVAILNANYMAARLNGHYKVLYTGKEGFCAHEFILDLREFKASAGVTEADVAKRLADYNFHAPTMSWPVAGTIMVEPTESEDKAELDRFCEAMISIRKEIAQIEQGLQPRDDNVLKNAPHTAAIVMADDWTRPYSRNAAAFPLPSLRSAKFWPTTSRVNDTYGDRNLVCSC 994
                 9*****************************************99887777***************************************************************************************************976.67789*****************************************************************************************************************************************************************************************************************************9988766544*****************************************999999998752424567789**********************************************************************************************************************************************************************************************************************************************************************************66554....477889************************************************************************************************************************************************************************************************************* PP

>> TIGR03812  tyr_de_CO2_Arch: tyrosine decarboxylase MnfA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.0     0.015        31     271     313 ..     381     421 ..     350     442 .. 0.73
   2 !   12.3   0.0     6e-06     0.012      62     191 ..     588     724 ..     526     728 .. 0.69

  Alignments for each domain:
  == domain 1    score: 1.1 bits;  conditional E-value: 0.015
   TIGR03812 271 asaaatyavlkylGreGyrkvveecmeltrylveelkklglep 313
                 a+ aa y+  +y+G +G r+++++c   + +l++ l klg + 
  MMETSP1137-20121227|7604_1 381 ANIAALYG--MYHGPDGLRAIASHCQRSAAVLRHGLLKLGCTS 421
                 33444454..59*********************9999998776 PP

  == domain 2    score: 12.3 bits;  conditional E-value: 6e-06
   TIGR03812  62 eevvellgellhlkeal.Gyiv..sGGteanilalraaknlakeekk.ekpeiivPesahfsfekaaellglelvkaeldeeykvdvkkveeliedntiglvgiaGt..telGlvDd.ieelskiakendlylhvDa 191
                  e++++l ell    ++ G       G+      lr+++  ++++ + ++   ++P sah +    a + g+++v    d+  ++dv++++++ e++++ l ++  t     G+ ++ i ++ ++ +en+  +++D 
  MMETSP1137-20121227|7604_1 588 AELIRSLEELLCEITGFpGMSLqpNSGASGEYSGLRTIRAYQESKGEgHRNVCLIPVSAHGTNPASAAMSGMRIVPIGCDNAGNIDVADLKAKAEKHKDNLSALMVTypSTHGVFEEtIVDICNVVHENGGQVYMDG 724
                 5666666666655333312221124566666777888888877777734455689****************************************999888876655225667765338888888888877666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1011 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       101  (0.0246221); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.68u 0.20s 00:00:00.88 Elapsed: 00:00:00.95
# Mc/sec: 1404.64
//
Query:       MMETSP1137-20121227|7605_1  [L=582]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (582 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       206  (0.0502194); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.18s 00:00:00.56 Elapsed: 00:00:00.52
# Mc/sec: 1477.26
//
Query:       MMETSP1137-20121227|7606_1  [L=434]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (434 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        77  (0.0187713); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.17s 00:00:00.47 Elapsed: 00:00:00.45
# Mc/sec: 1272.96
//
Query:       MMETSP1137-20121227|7607_1  [L=117]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (117 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        42  (0.0102389); expected 82.0 (0.02)
Passed bias filter:                       38  (0.00926377); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.15s 00:00:00.29 Elapsed: 00:00:00.37
# Mc/sec: 417.37
//
Query:       MMETSP1137-20121227|7608_1  [L=676]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   4.7e-287  951.0  12.3   5.4e-287  950.8   8.5    1.0  1  TIGR02350 prok_dnaK: chaperone protein DnaK
   1.5e-186  619.3   8.3   1.8e-186  619.0   5.8    1.0  1  TIGR01991 HscA: Fe-S protein assembly chaperone HscA
    7.3e-15   52.9   0.7    3.3e-12   44.2   0.3    2.7  2  TIGR02529 EutJ: ethanolamine utilization protein EutJ family protein
    8.1e-13   45.9   0.8    4.6e-11   40.2   0.1    2.4  2  TIGR00904 mreB: cell shape determining protein, MreB/Mrl family
    0.00029   17.9   5.1     0.0027   14.7   0.0    3.0  4  TIGR01174 ftsA: cell division protein FtsA


Domain annotation for each model (and alignments):
>> TIGR02350  prok_dnaK: chaperone protein DnaK
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  950.8   8.5  6.6e-290  5.4e-287       2     596 .]      47     644 ..      46     644 .. 0.99

  Alignments for each domain:
  == domain 1    score: 950.8 bits;  conditional E-value: 6.6e-290
   TIGR02350   2 iiGidLGttnsvvavleggepvvianaeGarttPsvvafkkdgerlvGelakrqavtnpentivsikrliGrkle..eveeeakkvpykvveaen.evkvevedkeytpeeisaeiLqklkkdaeaylGekvteavitvPayfndaqrqatkdaGkiaGlevlriinePtaaaLayGldkekkdekilvfdlGGGtfdvsilelgdgvfevkstaGdtkLGGddfdekiidylaeefkkeegidLskdkmalqrlkeaaekakieLssaleteinlpfitadasgpkhlelkltrakfeelvedlvertkepvkkalkdaklsaseidevilvGGstriPavqelvkelvgkepnksvnPdevvaiGaaiqggvlkgevkdvlLldvtPLsLgietlGgvltkliernttiPtkksqvfstaednqpaveihvlqGerelaadnkslgrfeLtgippaPrGvpqievtfdidanGilsvsakdkatgkeqsititassglseeeiermvkeaeanaeedkkkkeevearneadsliyqaektlkeagdkleeeekekiekaveelkealkeedveek.ikakteelekaleklaealyk 596
                 +iGidLGttns+va++egg+p+vi+naeG+rttPsv+af++dg+rlvG +akrqavtnp  t+++ krliGr+++  +v+++ k+vpy++v+a+n +++++ve+k+y+p + +a+iL k+k++ae +lG +v++av+tvPayfnd+qrqatkdaGkiaGlevlriinePtaaaLayGldk k+ e i+v+dlGGGtfdvsile+++gvfevk+t+Gdt LGG+dfd  ++dyl +efkke+gi L  dk a+qrl+eaaekak eLss+++t+i+lpfitadasgpkhl++k+trak+e+l+e+lv+rt +p+k+ lkda++s+se++evilvGG+tr+P+vq++v +++g++p k+vnPdevva+Gaaiqggvl+g+vkd+lLldvtPLsLgietlGgv+tkli+rnttiPtkksq+fsta+dnq+ v i+vlqGer++aadnk lg+f+L gippaPrG+pqievtfdidanGi++vsakdka+gk+q+i+i++s+gls+++ie mvkeae na +d+++ke vearneadsliyq+ek+l+e++dk+++e+++ki++ +++lkea++++d+++  +++k++ l++ + k++ea+yk
  MMETSP1137-20121227|7608_1  47 VIGIDLGTTNSCVALMEGGSPRVIENAEGSRTTPSVIAFTSDGQRLVGAAAKRQAVTNPSGTLFATKRLIGRRFDdpHVQKDLKTVPYQIVRADNgDAWISVEGKTYSPSQAGAFILGKMKETAESHLGTPVQHAVVTVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAALAYGLDK-KDGEVIAVYDLGGGTFDVSILEISGGVFEVKATNGDTLLGGEDFDIVLLDYLKSEFKKEQGIXLGADKLAVQRLREAAEKAKAELSSTTQTDISLPFITADASGPKHLNVKMTRAKLEALTENLVNRTLDPCKACLKDAGVSTSEVNEVILVGGMTRMPKVQQTVSTFFGQDPFKGVNPDEVVALGAAIQGGVLRGDVKDILLLDVTPLSLGIETLGGVMTKLISRNTTIPTKKSQTFSTAADNQQQVGIKVLQGERQMAADNKMLGQFDLVGIPPAPRGMPQIEVTFDIDANGIVNVSAKDKASGKQQQIRIQSSGGLSDADIENMVKEAELNASADQERKEVVEARNEADSLIYQTEKSLNEYKDKVPTEDQDKIRADIAALKEATSNQDITSTlLREKITGLQTSSLKIGEAMYK 644
                 8*************************************************************************97789****************9************************************************************************************.889******************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************99999****************9985 PP

>> TIGR01991  HscA: Fe-S protein assembly chaperone HscA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  619.0   5.8  2.2e-189  1.8e-186       1     575 [.      47     633 ..      47     653 .. 0.95

  Alignments for each domain:
  == domain 1    score: 619.0 bits;  conditional E-value: 2.2e-189
   TIGR01991   1 avGiDlGttnslvaavregkaevlkdeegrvllpsvvryleegkvevGkeakeaaaedpkntiisvkRlmGrsled..vkkeaeelpyeledakgemvrlktaqgevtPvevsaeiLkklkkraeealgkelkgavitvPAYFddaqrqatkdAarlaglnvlRLlnePtaAAvAYGldkaseglyavYDLGGGtFDvsiLklekGvFevlatgGdsaLGGDDfDralaklil....kkagleaelskeekkellkaaraakeaLtdaeevevevkl......egkdlkaklsreeleelieelvkktleivrralrdaglkveeikevvlvGGstrvplvrqavaelFkkepltdldPdevvAlGAalqadlLaknkrkedllLlDviPLsLGletmGGlvekiipRnttiPvakaqeFttykDgqtalaihvvqGeRelvedcrsLarFeLrgippmaAGaarirvtfqvDadGllsvsaqekltgveakievkpsygLsdeeiekmlkdslknaeeDmeaRalaekkveaerilealekalkadkdLlseeelkaikaaleklekaleeddaea..ikaaiealee 575
                 ++GiDlGttns va ++ g+++v++++eg+ + psv+ ++++g+  vG++ak++a+++p+ t+ + kRl+Gr  +d  v+k  ++ py+++ a+++   ++++ ++ +P +  a iL k+k+ ae++lg+ +++av+tvPAYF+d qrqatkdA+++agl+vlR++nePtaAA+AYGldk+  +++avYDLGGGtFDvsiL ++ GvFev+at Gd+ LGG+DfD +l +++     k++g+    +k  ++ l +aa++ak +L++++++++++          k+l++k++r++le+l+e+lv++tl+++++ l+dag++++e++ev+lvGG tr+p+v+q+v+++F+++p++ ++PdevvAlGAa+q  +L ++ +  d+lLlDv+PLsLG+et+GG++ k+i+RnttiP++k+q F t  D+q  + i+v+qGeR++++d++ L++F+L gipp + G+ +i+vtf++Da+G+++vsa++k +g++++i+++ s gLsd +ie+m+k++  na  D e++ + e++ ea+ ++ ++ek+l++ kd + +e++ +i+a +++l++a++++d+++  ++++i+ l++
  MMETSP1137-20121227|7608_1  47 VIGIDLGTTNSCVALMEGGSPRVIENAEGSRTTPSVIAFTSDGQRLVGAAAKRQAVTNPSGTLFATKRLIGRRFDDphVQKDLKTVPYQIVRADNGDAWISVEGKTYSPSQAGAFILGKMKETAESHLGTPVQHAVVTVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAALAYGLDKKDGEVIAVYDLGGGTFDVSILEISGGVFEVKATNGDTLLGGEDFDIVLLDYLKsefkKEQGIXLGADKLAVQRLREAAEKAKAELSSTTQTDISLPFitadasGPKHLNVKMTRAKLEALTENLVNRTLDPCKACLKDAGVSTSEVNEVILVGGMTRMPKVQQTVSTFFGQDPFKGVNPDEVVALGAAIQGGVLRGDVK--DILLLDVTPLSLGIETLGGVMTKLISRNTTIPTKKSQTFSTAADNQQQVGIKVLQGERQMAADNKMLGQFDLVGIPPAPRGMPQIEVTFDIDANGIVNVSAKDKASGKQQQIRIQSSGGLSDADIENMVKEAELNASADQERKEVVEARNEADSLIYQTEKSLNEYKDKVPTEDQDKIRADIAALKEATSNQDITStlLREKITGLQT 633
                 59**********************************************************************9998446788899**********************************************************************************************************************************************99999866667788888899999999999***********99999876432222122467899************************************************************************************97765..59***********************************************************************************************************************************************************************************************875225666666655 PP

>> TIGR02529  EutJ: ethanolamine utilization protein EutJ family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.2   0.3     4e-15   3.3e-12      45     152 ..     162     279 ..     156     294 .. 0.78
   2 !    5.9   0.0     0.002       1.7     190     238 ..     367     415 ..     353     416 .. 0.91

  Alignments for each domain:
  == domain 1    score: 44.2 bits;  conditional E-value: 4e-15
   TIGR02529  45 ivkrlkdklekklGieltkaaiavPPGveegdkkvivnvvesaGlevlkvldePtaaaav..lqlkng...avvdvGGGttGisilkkGkviysa.....deatGGthlslvlaGayk 152
                 i+ ++k+++e +lG+ +++a ++vP   ++++ +++ +    aGlevl++++ePtaaa +  l+ k+g   av d+GGGt  +sil+    ++       d   GG+++ +vl  ++k
  MMETSP1137-20121227|7608_1 162 ILGKMKETAESHLGTPVQHAVVTVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAALAygLDKKDGeviAVYDLGGGTFDVSILEISGGVFEVkatngDTLLGGEDFDIVLLDYLK 279
                 67899***************************************************9876226667883334569***********96555554311112555577777777666655 PP

  == domain 2    score: 5.9 bits;  conditional E-value: 0.002
   TIGR02529 190 iekqkvkdlylvGGassfsefedvfekelglevikpaepllvtPlgial 238
                 + +++v+++ lvGG + +++++++++  +g + +k  +p  v  lg a+
  MMETSP1137-20121227|7608_1 367 VSTSEVNEVILVGGMTRMPKVQQTVSTFFGQDPFKGVNPDEVVALGAAI 415
                 67899**********************************9999999875 PP

>> TIGR00904  mreB: cell shape determining protein, MreB/Mrl family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    3.9   0.0    0.0061         5       5      58 ..      48      96 ..      44     106 .. 0.72
   2 !   40.2   0.1   5.6e-14   4.6e-11     100     200 ..     180     285 ..     165     416 .. 0.77

  Alignments for each domain:
  == domain 1    score: 3.9 bits;  conditional E-value: 0.0061
   TIGR00904  5 lgidlGtantlvyvkgkGivlsePsvvavekdkdakaksvlavGkeakemlgkt 58
                +gidlGt+n  v + + G     P v+   ++ + ++ sv+a+ ++ ++++g +
  MMETSP1137-20121227|7608_1 48 IGIDLGTTNSCVALMEGG----SPRVIENAEG-SRTTPSVIAFTSDGQRLVGAA 96
                8**********9998877....5777665555.456667777777777777755 PP

  == domain 2    score: 40.2 bits;  conditional E-value: 5.6e-14
   TIGR00904 100 kvlicvPsgiteverravkesaksaGarevylieeplaaaiGadlPveeptgsmvvdiGGGttevavislgGiv.vsks....irvaGdeldeaiikyirrkynll 200
                 + +++vP+   + +r+a k++ k aG +   +i+ep aaa+  +l  ++     v d+GGGt +v+++ ++G v   k+      ++G+++d  +++y++++++  
  MMETSP1137-20121227|7608_1 180 HAVVTVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAALAYGLDKKDGEVIAVYDLGGGTFDVSILEISGGVfEVKAtngdTLLGGEDFDIVLLDYLKSEFKKE 285
                 479******************************************************************987551444411224689*************999754 PP

>> TIGR01174  ftsA: cell division protein FtsA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0      0.66   5.4e+02       2      15 ..      47      60 ..      46      67 .. 0.83
   2 !    4.4   0.0    0.0044       3.6     164     212 ..     198     246 ..     179     254 .. 0.81
   3 !   14.7   0.0   3.3e-06    0.0027     244     352 ..     302     410 ..     288     418 .. 0.81
   4 ?   -2.7   0.3      0.63   5.1e+02      72     115 ..     521     565 ..     507     575 .. 0.67

  Alignments for each domain:
  == domain 1    score: -2.8 bits;  conditional E-value: 0.66
   TIGR01174  2 ivgldiGtskivai 15
                ++g+d+Gt++ ++ 
  MMETSP1137-20121227|7608_1 47 VIGIDLGTTNSCVA 60
                89******998875 PP

  == domain 2    score: 4.4 bits;  conditional E-value: 0.0044
   TIGR01174 164 ekaveraglevdnivlsslAsakav.LtedEkelGvvlidiGggttdiav 212
                 ++a + aglev +i+ ++ A+a a  L++ + e+ +++ d+Gggt d+++
  MMETSP1137-20121227|7608_1 198 KDAGKIAGLEVLRIINEPTAAALAYgLDKKDGEV-IAVYDLGGGTFDVSI 246
                 5566779***************996365555555.6788********998 PP

  == domain 3    score: 14.7 bits;  conditional E-value: 3.3e-06
   TIGR01174 244 eeAEkiKikygsalieleseeesveipsvg.ereerelskkelaeiieaRveEileivkqkelkksgl.keelaagivltGGaaqlkgikelaekvfdkk.vrigapqnitG 352
                 e+AEk K + +s ++    +   ++    g ++ + ++++++l +  e+ v+ +l   k + lk++g+ ++e+++ ++l GG++++  +++  ++ f +   +   p++++ 
  MMETSP1137-20121227|7608_1 302 EAAEKAKAELSSTTQTDI-SLPFITADASGpKHLNVKMTRAKLEALTENLVNRTLDPCK-ACLKDAGVsTSEVNE-VILVGGMTRMPKVQQTVSTFFGQDpFKGVNPDEVVA 410
                 678888888877766643.335666666677999************************8.********7777777.*******************99876455555666665 PP

  == domain 4    score: -2.7 bits;  conditional E-value: 0.63
   TIGR01174  72 vvslsgahiksqnskgvvaikdkevtqediervleaakava.lpe 115
                 +v++s +   s +++ +   ++  +   die+++++a+  a  ++
  MMETSP1137-20121227|7608_1 521 IVNVSAKDKASGKQQQIRIQSSGGLSDADIENMVKEAELNAsADQ 565
                 577788877777777754444558888999999998887663333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (676 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       278  (0.0677718); expected 82.0 (0.02)
Passed bias filter:                      102  (0.0248659); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.54u 0.15s 00:00:00.69 Elapsed: 00:00:00.63
# Mc/sec: 1416.26
//
Query:       MMETSP1137-20121227|7609_1  [L=1070]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1070 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       160  (0.0390054); expected 82.0 (0.02)
Passed bias filter:                      101  (0.0246221); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.66u 0.17s 00:00:00.83 Elapsed: 00:00:00.65
# Mc/sec: 2172.74
//
Query:       MMETSP1137-20121227|7610_1  [L=337]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (337 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        67  (0.0163335); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.14s 00:00:00.41 Elapsed: 00:00:00.38
# Mc/sec: 1170.53
//
Query:       MMETSP1137-20121227|7611_1  [L=881]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (881 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        99  (0.0241346); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.48u 0.19s 00:00:00.67 Elapsed: 00:00:00.53
# Mc/sec: 2194.01
//
Query:       MMETSP1137-20121227|7612_1  [L=531]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (531 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       197  (0.0480254); expected 82.0 (0.02)
Passed bias filter:                      100  (0.0243784); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.16s 00:00:00.55 Elapsed: 00:00:00.51
# Mc/sec: 1374.24
//
Query:       MMETSP1137-20121227|7614_1  [L=325]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (325 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       202  (0.0492443); expected 82.0 (0.02)
Passed bias filter:                      104  (0.0253535); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.14s 00:00:00.39 Elapsed: 00:00:00.40
# Mc/sec: 1072.41
//
Query:       MMETSP1137-20121227|7615_1  [L=641]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.017   10.8   0.4        0.1    8.3   0.0    1.9  2  TIGR01299 synapt_SV2: synaptic vesicle protein SV2


Domain annotation for each model (and alignments):
>> TIGR01299  synapt_SV2: synaptic vesicle protein SV2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.0    0.0072        30     516     577 ..     282     343 ..     273     374 .. 0.73
   2 ?    8.3   0.0   2.4e-05       0.1     510     575 ..     409     475 ..     381     494 .. 0.76

  Alignments for each domain:
  == domain 1    score: 0.1 bits;  conditional E-value: 0.0072
   TIGR01299 516 flglklksvsfkdslfkectfedvtsvntyfknctfidtlfentdleeykfvdselvnssfl 577
                 f g+ l+   +  +++  + f+     n  f  +t+ dt f+ +d+    f  + l  + f 
  MMETSP1137-20121227|7615_1 282 FNGVDLRGARLAHAILAGASFQLADVRNVQFDHATMTDTNFQYSDIRRASFRGATLDRTDFT 343
                 66777777788888888888887778888888888888888888888887777777666663 PP

  == domain 2    score: 8.3 bits;  conditional E-value: 2.4e-05
   TIGR01299 510 eyd.ndkflglklksvsfkdslfkectfedvtsvntyfknctfidtlfentdleeykfvdselvnss 575
                  y+ ++ f g  +k + f+d   +++ fe+    +  f+ c f ++ +  ++l    + +++++n++
  MMETSP1137-20121227|7615_1 409 SYFsDGDFTGAVFKGIRFRDGSVEHANFENADLGEGNFEACVFEEANLRGANLRRAILTETNMQNAN 475
                 4441567999999999999999999999999999999999999999888888888888888888875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (641 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        79  (0.0192589); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.15s 00:00:00.57 Elapsed: 00:00:00.70
# Mc/sec: 1208.64
//
Query:       MMETSP1137-20121227|7616_1  [L=169]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (169 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        71  (0.0173086); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.11s 00:00:00.31 Elapsed: 00:00:00.31
# Mc/sec: 719.55
//
Query:       MMETSP1137-20121227|7617_1  [L=756]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (756 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       435  (0.106046); expected 82.0 (0.02)
Passed bias filter:                      161  (0.0392491); expected 82.0 (0.02)
Passed Vit filter:                        22  (0.00536324); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.58u 0.21s 00:00:00.78 Elapsed: 00:00:00.64
# Mc/sec: 1559.12
//
Query:       MMETSP1137-20121227|7618_1  [L=118]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (118 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        99  (0.0241346); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.18s 00:00:00.28 Elapsed: 00:00:00.59
# Mc/sec: 263.98
//
Query:       MMETSP1137-20121227|7619_1  [L=137]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (137 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       134  (0.032667); expected 82.0 (0.02)
Passed bias filter:                      116  (0.0282789); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.16s 00:00:00.32 Elapsed: 00:00:00.40
# Mc/sec: 452.06
//
Query:       MMETSP1137-20121227|7620_1  [L=383]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00011   17.8   4.1    0.00012   17.7   2.9    1.1  1  TIGR02169 SMC_prok_A: chromosome segregation protein SMC
  ------ inclusion threshold ------
      0.028   11.3   0.3      0.081    9.8   0.0    1.8  2  TIGR01181 dTDP_gluc_dehyt: dTDP-glucose 4,6-dehydratase
       0.32    7.2  10.7       0.22    7.7   6.0    1.4  2  TIGR03185 DNA_S_dndD: DNA sulfur modification protein DndD


Domain annotation for each model (and alignments):
>> TIGR02169  SMC_prok_A: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   2.9   8.7e-08   0.00012     326     426 ..     136     240 ..      71     353 .. 0.75

  Alignments for each domain:
  == domain 1    score: 17.7 bits;  conditional E-value: 8.7e-08
   TIGR02169 326 akaeaeidklkeeieelereieeekkereklkeelkelkeeleelraeleevdkeaaelre....elkelkekleklkeelnelkreldrlleelkrleeelael 426
                     ++  ++ + ++++  ++ + ++e ++ +++l++  ++l+ lra+++ev+++ a++r     e ++++ + e+  ++  el re++ l e+l + ee+l++l
  MMETSP1137-20121227|7620_1 136 FTSAVKSGEVTKLAKKMVSQLSQTQVELDSCNKALRQTTAKLQMLRARADEVETQLAQMRVtsyvEANAMRDEREEHDRRVTELLREQETLFERLAESEERLSHL 240
                 455556666677778888899999999999999999999999999999999999998887522226677888888888888888888888888888877776654 PP

>> TIGR01181  dTDP_gluc_dehyt: dTDP-glucose 4,6-dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.0   5.9e-05     0.081     124     167 ..      93     133 ..      74     144 .. 0.86
   2 ?   -1.3   0.0      0.14   1.9e+02     252     310 ..     211     274 ..     168     281 .. 0.60

  Alignments for each domain:
  == domain 1    score: 9.8 bits;  conditional E-value: 5.9e-05
   TIGR01181 124 stDevyGdlekddaeftettplaPssPysaskaasdllvrayar 167
                 s D v G++        e+++ aPs+P  a+ka +d +vr+  r
  MMETSP1137-20121227|7620_1  93 SLDTVIGKMAVA---LDEKSKSAPSAPVVAAKADADGIVRTVER 133
                 778888888776...78**********************99776 PP

  == domain 2    score: -1.3 bits;  conditional E-value: 0.14
   TIGR01181 252 evvkiilelldkdedlieyvedrpGhDrryaldaskikreLgwkpkv.....tfeeglrktvkW 310
                 e  + + ell ++e l+e  ++   +    al ++ +++ Lgw         t++e +rk+  W
  MMETSP1137-20121227|7620_1 211 EHDRRVTELLREQETLFERLAESEERLSHLALLSNSLATTLGWVVAAsgspeTLKELVRKAAGW 274
                 3345566666667766666666666666677777777777777644311111455555555555 PP

>> TIGR03185  DNA_S_dndD: DNA sulfur modification protein DndD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   7.1   0.00094       1.3     361     479 ..      88     206 ..      58     240 .. 0.58
   2 ?    7.7   6.0   0.00016      0.22     202     305 ..     147     250 ..     133     296 .. 0.84

  Alignments for each domain:
  == domain 1    score: 5.2 bits;  conditional E-value: 0.00094
   TIGR03185 361 ktdleiplllsdselaqlevliekvkrekqdaksqLlkeleeleeelaeldkkietvpdeekvaelleeleeaeeevakseveieektekleelkeaieelrkel.....kektkqkedaeele 479
                  +++++  +++++    l++ ++ +  +   a ++ +        e a +  ++++ + ++  ++++++l ++++e+  +++++ ++t+kl+ l+ + +e+ ++l            ++a+ ++
  MMETSP1137-20121227|7620_1  88 ADQSASLDTVIGKMAVALDEKSKSAPSAPVVAAKADADGIVRT-VERAIFTSAVKSGEVTKLAKKMVSQLSQTQVELDSCNKALRQTTAKLQMLRARADEVETQLaqmrvT----SYVEANAMR 206
                 5555555555555555555555555554443333333333322.2344556667777777778899999999999999999999999999999999999999999744331....333332222 PP

  == domain 2    score: 7.7 bits;  conditional E-value: 0.00016
   TIGR03185 202 eleseieseiealeaelkeqeekievlaqeiaalrkeleeaerkleslekkfeseGgelaeereelerqqkeleaklkavraelrelaadllPLlliknllssv 305
                 +l ++++s++++ + el + ++   +  ++++ lr +++e e++l +++ +   e  ++ +eree  r+++el  +++ + ++l e  ++l  L+l++n l+ +
  MMETSP1137-20121227|7620_1 147 KLAKKMVSQLSQTQVELDSCNKALRQTTAKLQMLRARADEVETQLAQMRVTSYVEANAMRDEREEHDRRVTELLREQETLFERLAESEERLSHLALLSNSLATT 250
                 55667788888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888877765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (383 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       355  (0.0865431); expected 82.0 (0.02)
Passed bias filter:                      110  (0.0268162); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.36u 0.17s 00:00:00.53 Elapsed: 00:00:00.60
# Mc/sec: 842.53
//
Query:       MMETSP1137-20121227|7621_1  [L=369]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (369 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        66  (0.0160897); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.15s 00:00:00.42 Elapsed: 00:00:00.35
# Mc/sec: 1391.54
//
Query:       MMETSP1137-20121227|7622_1  [L=593]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00012   19.0   0.0     0.0036   14.1   0.0    2.2  2  TIGR02037 degP_htrA_DO: peptidase Do
    0.00091   17.2   0.1        1.5    6.9   0.0    2.8  3  TIGR02378 nirD_assim_sml: nitrite reductase [NAD(P)H], small subunit
  ------ inclusion threshold ------
      0.023   11.5   0.0        0.4    7.4   0.0    2.1  2  TIGR02860 spore_IV_B: stage IV sporulation protein B


Domain annotation for each model (and alignments):
>> TIGR02037  degP_htrA_DO: peptidase Do
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.0   2.6e-06    0.0036     253     318 ..     286     352 ..     282     361 .. 0.80
   2 ?    2.2   0.0      0.01        14     388     427 ..     469     508 ..     440     514 .. 0.76

  Alignments for each domain:
  == domain 1    score: 14.1 bits;  conditional E-value: 2.6e-06
   TIGR02037 253 lglekakGalvaevlkgspAekaGl.kaGDvilkvngkkiksaadlreaigtlkpgkkvklkilRkg 318
                 +g++  +  +v +v ++s A++ Gl ++GD +l+vn+ +++s++ +++   +l+ g+ +++++ R  
  MMETSP1137-20121227|7622_1 286 FGMALDSDNVVLTVRPDSEAARCGLvQVGDRVLAVNETEVSSSRPVKSVTIDLSDGDIAHFRMRRAR 352
                 6666677778889999999999996588999999999999999999999999999988888887765 PP

  == domain 2    score: 2.2 bits;  conditional E-value: 0.01
   TIGR02037 388 kgdvilsvnqkevksvaelkkvleeakkkervlllvergg 427
                  gd +l+vn++ev+s + +k+v   +++++++ + ++r +
  MMETSP1137-20121227|7622_1 469 LGDRVLAVNETEVSSSRPVKSVTIDLSDGDIAHFRMRRAR 508
                 4777778888888887777777777777777666666654 PP

>> TIGR02378  nirD_assim_sml: nitrite reductase [NAD(P)H], small subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0      0.42   5.7e+02       7      34 ..      25      52 ..      20      57 .. 0.76
   2 !    6.9   0.0    0.0011       1.5      14      47 ..     328     364 ..     316     369 .. 0.80
   3 !    6.9   0.0    0.0011       1.5      14      47 ..     484     520 ..     472     525 .. 0.80

  Alignments for each domain:
  == domain 1    score: -1.4 bits;  conditional E-value: 0.42
   TIGR02378  7 kleelpeesgvavklddeqlAiFrvkkk 34
                + + l ++++  +k +++q+A+    +k
  MMETSP1137-20121227|7622_1 25 RFQLLTQKKANLAKQQKRQVALLLRDDK 52
                556678899999*********9765555 PP

  == domain 2    score: 6.9 bits;  conditional E-value: 0.0011
   TIGR02378  14 e...sgvavklddeqlAiFrvkkkevyAiqnlcPhkr 47 
                 +   ++v++ l+d ++A Fr++  +   + n  P+  
  MMETSP1137-20121227|7622_1 328 SrpvKSVTIDLSDGDIAHFRMRRARTSSTTNQAPQAA 364
                 345589******************9999999999874 PP

  == domain 3    score: 6.9 bits;  conditional E-value: 0.0011
   TIGR02378  14 e...sgvavklddeqlAiFrvkkkevyAiqnlcPhkr 47 
                 +   ++v++ l+d ++A Fr++  +   + n  P+  
  MMETSP1137-20121227|7622_1 484 SrpvKSVTIDLSDGDIAHFRMRRARTSSTTNQAPQAA 520
                 345589******************9999999999874 PP

>> TIGR02860  spore_IV_B: stage IV sporulation protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   0.0   0.00029       0.4     126     172 ..     306     353 ..     279     365 .. 0.79
   2 ?    1.6   0.0     0.016        22     132     171 ..     468     508 ..     448     520 .. 0.78

  Alignments for each domain:
  == domain 1    score: 7.4 bits;  conditional E-value: 0.00029
   TIGR02860 126 aeeagiqvGDlilkvngekikeeedvaklineag.geklkltikRkkk 172
                 a+ + +qvGD++l+vn++++ +++ v+++  + + g   +  ++R   
  MMETSP1137-20121227|7622_1 306 ARCGLVQVGDRVLAVNETEVSSSRPVKSVTIDLSdGDIAHFRMRRART 353
                 556679********************9986665536666666666655 PP

  == domain 2    score: 1.6 bits;  conditional E-value: 0.016
   TIGR02860 132 qvGDlilkvngekikeeedvaklineag.geklkltikRkk 171
                 ++GD++l+vn++++ +++ v+++  + + g   +  ++R  
  MMETSP1137-20121227|7622_1 468 RLGDRVLAVNETEVSSSRPVKSVTIDLSdGDIAHFRMRRAR 508
                 47*****************9998666553655566666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (593 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       120  (0.029254); expected 82.0 (0.02)
Passed bias filter:                      100  (0.0243784); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.43u 0.18s 00:00:00.61 Elapsed: 00:00:00.87
# Mc/sec: 899.65
//
Query:       MMETSP1137-20121227|7623_1  [L=386]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (386 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        77  (0.0187713); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.16s 00:00:00.44 Elapsed: 00:00:01.00
# Mc/sec: 509.48
//
Query:       MMETSP1137-20121227|7624_1  [L=561]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (561 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       139  (0.0338859); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.14s 00:00:00.48 Elapsed: 00:00:00.56
# Mc/sec: 1299.05
//
Query:       MMETSP1137-20121227|7625_1  [L=706]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (706 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       110  (0.0268162); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.15s 00:00:00.55 Elapsed: 00:00:00.60
# Mc/sec: 1553.07
//
Query:       MMETSP1137-20121227|7626_1  [L=364]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   1.5e-146  485.4   0.1   1.8e-146  485.1   0.1    1.0  1  TIGR00034 aroFGH: 3-deoxy-7-phosphoheptulonate synthase
    8.8e-07   26.4   0.0    9.5e-06   23.0   0.0    2.4  1  TIGR01361 DAHP_synth_Bsub: phospho-2-dehydro-3-deoxyheptonate aldolase


Domain annotation for each model (and alignments):
>> TIGR00034  aroFGH: 3-deoxy-7-phosphoheptulonate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  485.1   0.1  8.8e-150  1.8e-146       4     342 .]      19     362 ..      16     362 .. 0.97

  Alignments for each domain:
  == domain 1    score: 485.1 bits;  conditional E-value: 8.8e-150
   TIGR00034   4 rivkidelltPeelkakfpltekaaekvaksrkeiadilaGkddrllvviGPcsihdpeaaleyakrlkklaeklkddleivmrvyfekPrttvGWkGlindPdlnesfdvnkGlriarkllldlvelglplatelldtispqyladllswgaiGarttesqvhrelasglslpvgfkngtdGslkvaidairaaaaehlflsvtkaGqvaivetkGnedghiilrGGkk.pnydaedvaevkeelekaglkeelmidfshgnsnkdykrqlevaesvveqiaeG..ekaiiGvmiesnleeGnqsl..keelkyGksvtdacigwedteallrklaeavkerr 342
                 + ++ ++l++ + lk++fp+t+ aa++ a +  e+  +l+Gkddrl+v++GPcs+h+  +a+eya++lk+l+ek  ++l +vmrvyfekPrttvGWkGlindPdln+s+++nkGlr arkllld++ lg+p+ate+ldti+p y++dl++wgaiGart+esq+hre+ sgl +pvgfkngt G+++vaida+ ++ ++h +l+v+++G++a++++kGn+++h+ilrGG + pn++a++vae+ ++++ka+l+++++id+shgnsnk++++q++va+++ +q++    +++i+Gvmiesnl+eG+q++  + +l+yG+s+tdacigwe+te+ l+ la+av+++r
  MMETSP1137-20121227|7626_1  19 EAMETKPLISAALLKEEFPVTPVAASTHAAALAEVRAVLEGKDDRLIVIVGPCSVHNVDSAVEYATKLKALKEKHAKQLLVVMRVYFEKPRTTVGWKGLINDPDLNNSYNINKGLRTARKLLLDVNALGMPAATEFLDTITPHYISDLICWGAIGARTSESQLHREMVSGLDVPVGFKNGTSGDVQVAIDACGSSMRPHSYLGVSQQGVAAVMKSKGNDHCHVILRGGAAgPNFEASHVAEASAKMSKASLSPKIVIDCSHGNSNKKFENQPKVADDIGKQLEAAgkSTSIVGVMIESNLVEGAQKIgdGTNLVYGQSITDACIGWESTEKTLAGLAAAVDKKR 362
                 5678899**********************************************************************************************************************************************************************************************************************************************************************************975423679*****************666789***************************9875 PP

>> TIGR01361  DAHP_synth_Bsub: phospho-2-dehydro-3-deoxyheptonate aldolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.0   0.0   4.6e-09   9.5e-06      12     149 ..      49     207 ..      41     218 .. 0.73

  Alignments for each domain:
  == domain 1    score: 23.0 bits;  conditional E-value: 4.6e-09
   TIGR01361  12 tvvdvedvkiGege.liviaGPCsveseeqivetakavke...aGak....llrGgafkPrtsPysfqGlg...........eeglkllkra...kdetgllvvtevlderdveivaeyvDilqiGarnmqnfelLkevgkskkPvlLkrglaatieewl 149
                 ++ +v+ v  G+++ livi+GPCsv + +  ve a ++k+   + ak    ++r    kPrt+   ++Gl            ++gl+  ++     ++ g++  te ld+   +++++ +    iGar ++     + v+  + Pv +k+g +  ++  +
  MMETSP1137-20121227|7626_1  49 ALAEVRAVLEGKDDrLIVIVGPCSVHNVDSAVEYATKLKAlkeKHAKqllvVMRVYFEKPRTT-VGWKGLIndpdlnnsyniNKGLRTARKLlldVNALGMPAATEFLDTITPHYISDLICWGAIGARTSESQLHREMVSGLDVPVGFKNGTSGDVQVAI 207
                 55677777778776599******************88764111444333336799999***97.466776411111111112345665555422236789****************************9998877788999**********999887655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (364 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       143  (0.034861); expected 82.0 (0.02)
Passed bias filter:                      103  (0.0251097); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.32u 0.11s 00:00:00.43 Elapsed: 00:00:00.50
# Mc/sec: 960.88
//
Query:       MMETSP1137-20121227|7628_1  [L=865]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (865 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        96  (0.0234032); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.53u 0.17s 00:00:00.70 Elapsed: 00:00:00.48
# Mc/sec: 2378.55
//
Query:       MMETSP1137-20121227|7629_1  [L=81]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (81 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        61  (0.0148708); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.11s 00:00:00.25 Elapsed: 00:00:00.26
# Mc/sec: 411.20
//
Query:       MMETSP1137-20121227|7630_1  [L=535]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.7e-21   74.5   0.0    2.5e-21   74.0   0.0    1.1  1  TIGR04171 RNR_1b_NrdF: ribonucleoside-diphosphate reductase, class 1b, beta subunit


Domain annotation for each model (and alignments):
>> TIGR04171  RNR_1b_NrdF: ribonucleoside-diphosphate reductase, class 1b, beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.0   0.0   6.2e-25   2.5e-21      14     302 ..     237     516 ..     231     526 .. 0.82

  Alignments for each domain:
  == domain 1    score: 74.0 bits;  conditional E-value: 6.2e-25
   TIGR04171  14 dkevwekllkqfWldeeiplsnDlksWkelseeekelvkkvltgLtlLDtlqsevGmpaliesveteqekavlnniafmeavHAksYssifstlls.teeidelfeWveenealqkkaelilevYeeledpellkakvasvllesfLfYsgFylPlylagqgkltnsaeiiklilrDesiHgvyvglkaqelleklseeeqeelkkevlelleelyeneekyteelY..devglted.vkkfvrYnankalmnlGfealfeeeaeevnpvvlnglstetknhDfFskkgngYk 302
                   e+++k  + fW+ eei l  D+++W +l+++e++ ++ vl+  +  D +  e+ ++ + ++v+ ++ +  + +  +me+vH   Ys +  t+++ ++e ++lf  +++ +a+++kae  l+   +  d +  ++ va + +e++ f + F   ++l  +g +   +   +li rDe +H  +  l++ +l + l +e        +le++++ ++ e k++++    + +g++ + +++++++ a++ +  lG+e+ + ++    np     l +   + +fF ++   Y+
  MMETSP1137-20121227|7630_1 237 MWEMYKKHEASFWTAEEIDLGPDKQDWDRLTSDERHFISMVLAFFAAADGIVVENLAERFCRDVKLPEARCFYGFQIAMENVHSETYSLLIDTFIKeHAERERLFGAISRVPAVREKAEWALRWVGA--DAQFAERLVAFAAVEGIFFSGAFCSIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSKLQRPLXRE-------RLLEIITQAVDIERKFVTDALpvNLIGMNAKlMTQYIEFVADRLIRELGYESHYGAT----NPFEWMDLISMQGKTNFFERRVGEYQ 516
                 5578999************************************************************************************99876157999******************9998877..44489999*******9866555656666667777777777788999***********9998887776654.......5566677777777777655431245676655256899*****************999....77655555444555567777766665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (535 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        96  (0.0234032); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.19s 00:00:00.55 Elapsed: 00:00:00.46
# Mc/sec: 1535.09
//
Query:       MMETSP1137-20121227|7631_1  [L=328]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (328 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       139  (0.0338859); expected 82.0 (0.02)
Passed bias filter:                      114  (0.0277913); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.14s 00:00:00.41 Elapsed: 00:00:00.41
# Mc/sec: 1055.91
//
Query:       MMETSP1137-20121227|7632_1  [L=608]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (608 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       168  (0.0409556); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.14s 00:00:00.54 Elapsed: 00:00:00.55
# Mc/sec: 1459.08
//
Query:       MMETSP1137-20121227|7633_1  [L=201]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.6e-66  221.2   0.0    2.9e-66  221.0   0.0    1.0  1  TIGR01755 flav_wrbA: NAD(P)H:quinone oxidoreductase, type IV
      1e-05   23.9   0.0    0.00031   19.1   0.0    2.1  2  TIGR01753 flav_short: flavodoxin


Domain annotation for each model (and alignments):
>> TIGR01755  flav_wrbA: NAD(P)H:quinone oxidoreductase, type IV
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  221.0   0.0   1.4e-69   2.9e-66       2     197 .]       5     199 ..       4     199 .. 0.99

  Alignments for each domain:
  == domain 1    score: 221.0 bits;  conditional E-value: 1.4e-69
   TIGR01755   2 kvlvlyysayGhiermakavaeGareveGaevvvkrvpellpeevlekstkkldqeapvatreeladydaiivGtatryGnmasqmrafldqtGGlwakgalvgkvgsvftssatqhGGqestilsfivtllhhGmiivglsyaakeqldvdevrGGspyGvstiadGdGsrqpseeeldaaryqGrrvaklaakl 197
                 kv ++yys+yGhi  +a    +G + + G ev++ +vpe+lpeevl+k++   + + p+a  ++l  yd i++G +tr+G+ a+qm+af+d tG lw+ galvgk + +f s+atq GGqe+t l+f ++l+hhGm+ v+++y+   ++d +e +GGspyG+ t+a+ dGsrqp + e ++a +qG++   + akl
  MMETSP1137-20121227|7633_1   5 KVAIVYYSMYGHIRSLAVEEKKGLEAA-GCEVTLLQVPETLPEEVLKKMGAPDKPDDPIAEAKDLPSYDGILFGLPTRFGMAAAQMKAFMDSTGSLWQTGALVGKPAGIFXSTATQAGGQETTALTFVTQLTHHGMMFVPIGYSSPLLFDLSEPHGGSPYGAGTLAGPDGSRQPLDLERKVAAHQGEYFGXIVAKL 199
                 89**********************999.**********************99999*****************************************************************************************************************************************9997 PP

>> TIGR01753  flav_short: flavodoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.0   1.5e-07   0.00031       1      44 [.       6      49 ..       6      54 .. 0.91
   2 ?    3.1   0.0     0.013        27      39      91 ..      64     118 ..      46     142 .. 0.66

  Alignments for each domain:
  == domain 1    score: 19.1 bits;  conditional E-value: 1.5e-07
   TIGR01753  1 ilivYaSmtGnteeiAeiieeglkeagaevdllevadvdkedll 44
                ++ivY+Sm G+  ++A + ++gl++ag ev+ll+v +  +e++l
  MMETSP1137-20121227|7633_1  6 VAIVYYSMYGHIRSLAVEEKKGLEAAGCEVTLLQVPETLPEEVL 49
                68********************************9988777765 PP

  == domain 2    score: 3.1 bits;  conditional E-value: 0.013
   TIGR01753  39 dkedlleyDavllGcst.wgdedleeddflpfveeleei.dlegkkvalfGsgdt 91 
                 +++dl +yD +l+G +t  g+   + + f++   +l ++  l gk +++f s  t
  MMETSP1137-20121227|7633_1  64 EAKDLPSYDGILFGLPTrFGMAAAQMKAFMDSTGSLWQTgALVGKPAGIFXSTAT 118
                 5678899*******99933555444334444444443331345666666666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (201 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        95  (0.0231594); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.22u 0.14s 00:00:00.36 Elapsed: 00:00:00.30
# Mc/sec: 884.33
//
Query:       MMETSP1137-20121227|7634_1  [L=172]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0026   14.6   1.9     0.0033   14.2   1.3    1.1  1  TIGR01035 hemA: glutamyl-tRNA reductase


Domain annotation for each model (and alignments):
>> TIGR01035  hemA: glutamyl-tRNA reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   1.3   8.1e-07    0.0033     296     366 ..      84     154 ..      72     169 .. 0.89

  Alignments for each domain:
  == domain 1    score: 14.2 bits;  conditional E-value: 8.1e-07
   TIGR01035 296 dvDdlkevveenlaerkeeaekaeaiveeeveefkqwlrsleveptikelrekaeevrekelekalkklea 366
                 ++D++++ v+ n +++++++++ ea+ +++v++  + +++ ev  ti+e  + a+e++ ++l+ a ++  +
  MMETSP1137-20121227|7634_1  84 KIDSVNTAVATNYESARDTVANSEAVQKATVAKDAAAIKASEVASTIAEQAALAKESVTEKLDAARHQAAE 154
                 69*****************************************************9999999888776554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (172 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       375  (0.0914188); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.19u 0.13s 00:00:00.32 Elapsed: 00:00:00.33
# Mc/sec: 687.94
//
Query:       MMETSP1137-20121227|7635_1  [L=809]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (809 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        75  (0.0182838); expected 82.0 (0.02)
Passed bias filter:                       38  (0.00926377); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.13s 00:00:00.58 Elapsed: 00:00:00.59
# Mc/sec: 1809.82
//
Query:       MMETSP1137-20121227|7636_1  [L=488]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      2e-12   44.2   0.0      2e-12   44.2   0.0    2.2  2  TIGR01642 U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor
    1.3e-11   42.0   0.1    1.3e-11   42.0   0.1    2.1  3  TIGR01622 SF-CC1: splicing factor, CC1-like family
    5.1e-08   30.7   0.0    5.1e-08   30.7   0.0    2.4  2  TIGR01661 ELAV_HUD_SF: ELAV/HuD family splicing factor
    1.3e-07   29.4   0.0    2.2e-07   28.7   0.0    1.3  1  TIGR01659 sex-lethal: sex-lethal family splicing factor
    2.1e-07   28.3  15.6    7.5e-07   26.5  10.8    1.8  1  TIGR01628 PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family
    7.5e-07   26.1   0.1    7.5e-07   26.1   0.1    3.2  4  TIGR01648 hnRNP-R-Q: hnRNP-R, Q splicing factor family
    4.8e-05   20.1  29.1    0.00013   18.7  20.2    1.6  1  TIGR01645 half-pint: poly-U binding splicing factor, half-pint family


Domain annotation for each model (and alignments):
>> TIGR01642  U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.2   0.0   3.4e-15     2e-12     280     369 ..      92     183 ..      73     192 .. 0.82
   2 ?   -2.6   4.6      0.52     3e+02      16     169 ..     207     363 ..     196     389 .. 0.52

  Alignments for each domain:
  == domain 1    score: 44.2 bits;  conditional E-value: 3.4e-15
   TIGR01642 280 lkaveklvnsktv..ldsedklyignLPldlkddqvkeLLesFGdLkaFnliKdlatGlsKGyaFceykdssvtdlAiaaLnGiklgdkkLn 369
                 ++   k+++s++    +    ly+g +P+ + ++q++    +FG +    l ++++tG s+ yaF+e++   v+ +  +++nG  l++k L 
  MMETSP1137-20121227|7636_1  92 IDKKAKSSTSTVQkrKQAGAVLYLGHIPHGFYEEQMRGFFSQFGTVTRLRLARNSKTGRSQHYAFIEFEHEDVARIVAKSMNGYLLYNKVLV 183
                 344444544444300455567********************************************************************996 PP

  == domain 2    score: -2.6 bits;  conditional E-value: 0.52
   TIGR01642  16 drdkskeRsRkR.srdrsrdRdRdrrdrrrsrrkdsRdRdrrrydsrsissleedsrrrSRdrirrrsrsssseskerrrsrkrsssn......ekkkddkkrslwdvkppkyeavtavqakasqvansvpgiaqkssltstekllaegskitdlpvlave 169
                  ++   e++Rk+ +r rs++ +  ++  +   + d+R+R++  +   + +   ++     R++  r +r   ++s +  +   ++ s       + k + kkr +   k +  +av++   k   +a+ v++ a  s+  ++++  a  s  t+ +v+a  
  MMETSP1137-20121227|7636_1 207 PKNYFIEKERKKfNRMRSDEEQAAHE--KLLVKADKRKRRKLAKAGIEYEFSGYKPLVEKRQQ-VRAERLAAKGSADGSGDDGSAASAepkaqpSVKDSGKKRAKAGAKAAAVDAVDNSSSKSPPAASTVAA-AGPSATGPKKRKKAAESSFTAEAVPAAA 363
                 33333344443323444444433444..56778899999999888877776666665555555.33333333333333333333322200000134445566666666666666666666666666655555.3333333333334555555655555444 PP

>> TIGR01622  SF-CC1: splicing factor, CC1-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.0   0.1   2.2e-14   1.3e-11     201     284 ..      95     175 ..      76     182 .. 0.85
   2 ?   -2.4   0.5      0.67   3.9e+02      70     103 ..     217     245 ..     201     278 .. 0.55
   3 ?   -2.1   0.3      0.52     3e+02     308     357 ..     292     340 ..     261     392 .. 0.45

  Alignments for each domain:
  == domain 1    score: 42.0 bits;  conditional E-value: 2.2e-14
   TIGR01622 201 raakaatelsgdipnsiadlkLYvGnlhfnitEqeLrqiFepFGeielvqlqkDpetGrskGyGFiqFsdaeeakeAleklNGl 284
                 +a++ + +++   +   a   LY+G +     E+++r+ F  FG +  ++l ++++tGrs+ y Fi+F++ + a+   + +NG 
  MMETSP1137-20121227|7636_1  95 KAKSSTSTVQ---KRKQAGAVLYLGHIPHGFYEEQMRGFFSQFGTVTRLRLARNSKTGRSQHYAFIEFEHEDVARIVAKSMNGY 175
                 3333334444...33357889**************************************************************5 PP

  == domain 2    score: -2.4 bits;  conditional E-value: 0.67
   TIGR01622  70 reserererekerrredevrrkrkeredrrerre 103
                 ++ +r r+ e+     +  ++k   + d+r+rr+
  MMETSP1137-20121227|7636_1 217 KKFNRMRSDEE-----QAAHEKLLVKADKRKRRK 245
                 11122222111.....112222222333333333 PP

  == domain 3    score: -2.1 bits;  conditional E-value: 0.52
   TIGR01622 308 askfedsfdeseqsgldlnteereqldekldrddekgs.galaiagtdska 357
                 ++k + s+++s  + +  ++ +++   +++d++  k+  +a+++a ++  a
  MMETSP1137-20121227|7636_1 292 EPKAQPSVKDS--GKKRAKAGAKAAAVDAVDNSSSKSPpAASTVAAAGPSA 340
                 33333332222..22222333333333444444444333344444333322 PP

>> TIGR01661  ELAV_HUD_SF: ELAV/HuD family splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.7   0.0   8.7e-11   5.1e-08     227     342 ..      70     184 ..      16     194 .. 0.67
   2 ?   -7.8   6.4         7   4.1e+03     244     244 ..     385     385 ..     266     487 .. 0.55

  Alignments for each domain:
  == domain 1    score: 30.7 bits;  conditional E-value: 8.7e-11
   TIGR01661 227 akrlqqhavaqqaaaqrasplaadgavaglaagaqiaasdgagycifvynlspdt.deavlqlfgpfGavqsvkiirdlttnkckGygfvsmtnydeaalailslnGytlgnrvlqv 342
                 a+   ++++a +aaa+++   a+d ++++ ++   + +++ ag  +++  +     +e++  +f++fG+v+ +++ r+ +t + + y+f+     d a +  +s+nGy l n+vl  
  MMETSP1137-20121227|7636_1  70 ADVPSSKPLALNAAATKKLKGAIDKKAKSSTST--VQKRKQAGAVLYLGHIPHGFyEEQMRGFFSQFGTVTRLRLARNSKTGRSQHYAFIEFEHEDVARIVAKSMNGYLLYNKVLVC 184
                 444566777777777777777887777665444..4444567888888888766425556688888888888888888888888888888888888888888888888888888865 PP

  == domain 2    score: -7.8 bits;  conditional E-value: 7
   TIGR01661 244 a 244
                  
  MMETSP1137-20121227|7636_1 385 E 385
                 1 PP

>> TIGR01659  sex-lethal: sex-lethal family splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.7   0.0   3.7e-10   2.2e-07      69     186 ..      66     189 ..      29     197 .. 0.78

  Alignments for each domain:
  == domain 1    score: 28.7 bits;  conditional E-value: 3.7e-10
   TIGR01659  69 gssaatlgsvgnla.naastnsln.....slgsggsddndtrasgtnlivnylpqdmtdrelyalfrtigpintcrimrdyktgysfgyafvdfaseadsqraikslngitvrnkrlkvsyarp 186
                 + + a++ s   la naa+t  l       + s  s  ++ +++g+ l + ++p  + + ++  +f   g +   r+ r+ ktg s  yaf++f  e  ++   ks+ng  + nk l     +p
  MMETSP1137-20121227|7636_1  66 SEGEADVPSSKPLAlNAAATKKLKgaidkKAKSSTSTVQKRKQAGAVLYLGHIPHGFYEEQMRGFFSQFGTVTRLRLARNSKTGRSQHYAFIEFEHEDVARIVAKSMNGYLLYNKVLVCHLVKP 189
                 44445555544443266777777755554334445566788899999**************************************************9999999***********998877777 PP

>> TIGR01628  PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.5  10.8   1.3e-09   7.5e-07     251     519 ..      76     368 ..      51     483 .. 0.62

  Alignments for each domain:
  == domain 1    score: 26.5 bits;  conditional E-value: 1.3e-09
   TIGR01628 251 kilyVgraqkraeReaelkakfeelkqerkekaqgvNlYvkNlddtvddekLrelFeefGeitSakvmld.ekekSkgFGFVcfssqeeAnkAvtelhgkilngkPLyvalAqrkeqRkarLqqqfmq.asaesrql...sigspvigaanisgrhqaaqqqavvt..qavkqqlasqplnfkinqmmlstqnpskpea.................pnalaqlaqqrlqaqgrrnlnnrnrnv....lgnmnkkqqnaaskanqanvkaqpqaqsknqmqqvvqdnnlpqkqatksn 519
                 k l    a  ++ + a+ k+  + +++ +k+k+ g+ lY+  +  ++ +e++r  F++fG++t  ++ ++ ++++S+ + F+ f +++ A    + ++g +l +k L   l +  +   ++ ++      +++       +  ++    +  s ++qaa+++ +v+  + ++ +la+  ++++++  ++  ++ ++  a                 + +  ++aq   + +g++ ++ ++++      +n + k  +aas  + a  +a+   + k+  +++   +++p+ ++t+ +
  MMETSP1137-20121227|7636_1  76 KPLALNAAATKKLKGAIDKKAKSSTSTVQKRKQAGAVLYLGHIPHGFYEEQMRGFFSQFGTVTRLRLARNsKTGRSQHYAFIEFEHEDVARIVAKSMNGYLLYNKVLVCHLVKPENVHVNMFKHCEVPkEKPK---NyfiEKERKKFNRM-RSDEEQAAHEKLLVKadKRKRRKLAKAGIEYEFSGYKPLVEKRQQVRAerlaakgsadgsgddgsAASAEPKAQPSVKDSGKKRAKAGAKAAavdaVDNSSSKSPPAASTVAAAGPSATGPKKRKKAAESSFTAEAVPAAASTADS 368
                 55555666666666677666666666777999*************************************97789*********************************99998776666665555443213333...22233333333333.35556888888877734555667788888888555554444444222211222222233333332111111111112222222222222211111122222222222222222222222212222222222222223322222222 PP

>> TIGR01648  hnRNP-R-Q: hnRNP-R, Q splicing factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.0   0.1       0.1        61     465     550 ..      18     112 ..       6     113 .. 0.45
   2 !   26.1   0.1   1.3e-09   7.5e-07      55     157 ..     107     213 ..     101     254 .. 0.82
   3 ?   -7.8  10.3         7   4.1e+03     455     551 ..     308     403 ..     270     435 .. 0.55
   4 ?   -1.8   0.7      0.37   2.2e+02     455     488 ..     443     476 ..     423     487 .. 0.66

  Alignments for each domain:
  == domain 1    score: -0.0 bits;  conditional E-value: 0.1
   TIGR01648 465 kiiipaavsqdpaiaalap.pkasaavre..akstpaeyqlr.tlgvrtsa....gn.qriatagakakaydgyaaPdatarvataqqnkaaaav 550
                    +pa + ++pa  + ++ +++ aa r+    stpa  +   t g+++++    +  + +a  +a++k  +g    +a+++ +t q+ k+a av
  MMETSP1137-20121227|7636_1  18 PKRSPAKATPSPARLSNGAkSETPAAARPnaMPSTPASIEMEeTQGSESEGeadvPSsKPLALNAAATKKLKGAIDKKAKSSTSTVQKRKQAGAV 112
                 55566666666665322220222222222002344444433202222221100112223334445555566777777788888888888888665 PP

  == domain 2    score: 26.1 bits;  conditional E-value: 1.3e-09
   TIGR01648  55 PerGcevfvGkiPrdlyedelvPlfekvGkiyelrlmmd.ldGknrGyafvtfcnkeeakeavkelnnyeirpGrllGvcisvdncrlfv.....GgiPktkkreeile 157
                  + G+ +++G iP   ye+++   f + G +  lrl  +   G+ + yaf+ f + + a+   k +n y + +  l  vc  v+   + v       +Pk k ++  +e
  MMETSP1137-20121227|7636_1 107 KQAGAVLYLGHIPHGFYEEQMRGFFSQFGTVTRLRLARNsKTGRSQHYAFIEFEHEDVARIVAKSMNGYLLYNKVL--VCHLVKPENVHVnmfkhCEVPKEKPKNYFIE 213
                 578999*******************************99889***************************9998655..5555543333331122256888888877665 PP

  == domain 3    score: -7.8 bits;  conditional E-value: 7
   TIGR01648 455 iedgriltlekiiipaavsqdpaiaalappkasaavreakstpaeyqlrtlgvrtsagnqriatagakakaydgyaaPdatarvataqqnkaaaavg 551
                     +   ++ +    + +  pa++++a++  sa+  + + ++ae    + +v++ a+    a+ +a ak  +  +aP+a +++ + + +ka++++ 
  MMETSP1137-20121227|7636_1 308 KAGAKAAAVDAVDNS-SSKSPPAASTVAAAGPSATGPKKRKKAAESSFTAEAVPAAASTADSAASAASAKKKKKVSAPEAPKTLEAPKTLKASKTLE 403
                 223333333333333.333345555666666666666666666665555555555554433444444444447889999999999888888888884 PP

  == domain 4    score: -1.8 bits;  conditional E-value: 0.37
   TIGR01648 455 iedgriltlekiiipaavsqdpaiaalappkasa 488
                  ++++ +   k i  a+ +q++a aa+ap+k  a
  MMETSP1137-20121227|7636_1 443 EKRKKEKAAPKAIKAATSKQKAALAAAAPAKQKA 476
                 3455666677777777888888888888877654 PP

>> TIGR01645  half-pint: poly-U binding splicing factor, half-pint family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7  20.2   2.2e-07   0.00013      91     463 ..      99     477 ..      71     486 .. 0.71

  Alignments for each domain:
  == domain 1    score: 18.7 bits;  conditional E-value: 2.2e-07
   TIGR01645  91 enqqrqvqrqqalaimsrvvGsisfelkedtlrrafdPfGPiksinmsWdpvtqkhkgfafve.evPeaallaleqmngallGGrnlkvg............rPsnlpqaqpiidevqeeakkfnrivasvhpdlseedlksvfeafGeivkcklaraptlrkhkGfGflefenlqsqseaiasmnlfdlGGqllrvGkavtPPdallqPatvsalPaaaavaaaaatakitaaeavagaavlglraqspatassslvt..dieakavvssakkeae..evpalpqaapavlkdeviteekPvaPsllaiPslvaplglv.aPtei..npsllaspqlkieekieevtlgalddtlalkep..skeaasslalaaa.akakeaaaalllenkkkkk 463
                 ++   q +r+qa a++   +G i + + e+ +r  f+ fG +  + ++ ++ t++ + +af+e e  + a++   +mng ll  + l               +  ++p+ +p    +++e kkfnr+ +   +   e+    +  a  + ++ kla+a    +  G+  l  +++q + e +a+    d  G     G   +  ++ +qP+ + +         a a ak  a +av  +++ ++ a s + a++  +t  +  +ka  ss + ea     ++   aa a+ +++  + + P aP +l  P ++++ + + aP  +  + +l as++l+  +  e         tl+ +    +ke a+  a+ aa +k+k+a aa ++ +k+k+k
  MMETSP1137-20121227|7636_1  99 STSTVQ-KRKQAGAVLY--LGHIPHGFYEEQMRGFFSQFGTVTRLRLARNSKTGRSQHYAFIEfEHEDVARIVAKSMNGYLLYNKVLVCHlvkpenvhvnmfKHCEVPKEKPKNYFIEKERKKFNRMRSDEEQAAHEKL---LVKA-DKRKRRKLAKAGIEYEFSGYKPLVEKRQQVRAERLAAKGSADGSGD---DGS-AASAEPKAQPSVKDSG-----KKRAKAGAKAAAVDAVDNSSSKSPPAASTVAAAGPSATgpKKRKKAAESSFTAEAVpaAASTADSAASAASAKKKKKVSAPEAPKTLEAPKTLKASKTLeAPKTLeaSKTLEASKTLEAPKTLEAPKTPKAPRTLGAASEkrKKEKAAPKAIKAAtSKQKAALAA-AAPAKQKAK 477
                 333344.7888888874..8*************************************************************99887765577677777778878889999999999**********9887776665543...3444.577889**************8666599999************9999...444.3445556677655432.....23344556666667776666666666666666655555113344555555444443214445555666677777777888999********99877655267554446667788888877777777777777888765441145555555544440444444444.333444433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (488 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       181  (0.0441248); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         9  (0.00219405); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.60u 0.14s 00:00:00.74 Elapsed: 00:00:00.62
# Mc/sec: 1038.88
//
Query:       MMETSP1137-20121227|7637_1  [L=191]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (191 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       140  (0.0341297); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.17s 00:00:00.36 Elapsed: 00:00:00.28
# Mc/sec: 869.31
//
Query:       MMETSP1137-20121227|7638_1  [L=422]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.9e-15   54.2   0.0    8.1e-15   52.7   0.0    1.7  2  TIGR00311 aIF-2beta: putative translation initiation factor aIF-2, beta subunit
  ------ inclusion threshold ------
      0.044   12.0   1.0        0.1   10.8   0.2    2.0  2  TIGR03655 anti_R_Lar: restriction alleviation protein, Lar family


Domain annotation for each model (and alignments):
>> TIGR00311  aIF-2beta: putative translation initiation factor aIF-2, beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.7   0.0   3.9e-18   8.1e-15      27     126 ..      24     126 ..      12     132 .. 0.87
   2 ?   -2.9   0.0      0.61   1.3e+03       6      34 ..     241     267 ..     237     284 .. 0.64

  Alignments for each domain:
  == domain 1    score: 52.7 bits;  conditional E-value: 3.9e-18
   TIGR00311  27 kveilieGnrtiiknfrevakalnrdeehllkyllkelGtaG..nlegGrlilqgkfteellkkriedyvrkyvicrecnkpdtki.ikegrvlllkclacGa 126
                 k+e   +G++t+i n   v kal r +e+l+ky   elGt    n e G   + g     +l+++ + +++++v+c +c+ p+t + i++++  ++ c+acG 
  MMETSP1137-20121227|7638_1  24 KLEGRGNGKKTVITNADAVGKALKRAPEYLTKYCAVELGTIStfNKEMGEGTITGWHETPVLQEKTNKFIKEWVLCPKCGLPETSMdINKKKDIMFDCKACGY 126
                 444556789******************************9872255789999********************************9878888999*******95 PP

  == domain 2    score: -2.9 bits;  conditional E-value: 0.61
   TIGR00311   6 leraiekladkvvekerfevpkveilieG 34 
                 le+  +kl+  +   + fe+ k+ei +e 
  MMETSP1137-20121227|7638_1 241 LEKVEKKLSXSN--LDEFELQKLEISKEV 267
                 455555555443..366888887777664 PP

>> TIGR03655  anti_R_Lar: restriction alleviation protein, Lar family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.2     5e-05       0.1       4      40 ..      99     130 ..      97     140 .. 0.81
   2 ?   -3.3   0.0       1.3   2.6e+03      23      41 ..     260     275 ..     255     285 .. 0.53

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 5e-05
   TIGR03655   4 CPFCGgadvslregeddldeveivaveCktCgasgpv 40 
                 CP CG  + s     d++++  i+   Ck+Cg+ g +
  MMETSP1137-20121227|7638_1  99 CPKCGLPETS----MDINKKKDIM-FDCKACGYHGVA 130
                 ********94....4666677776.7******99865 PP

  == domain 2    score: -3.3 bits;  conditional E-value: 1.3
   TIGR03655  23 eveivaveCktCgasgpve 41 
                 + ei++ +C++ +    + 
  MMETSP1137-20121227|7638_1 260 KLEISKEVCEAME---SAS 275
                 5555544555433...333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (422 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       260  (0.0633837); expected 82.0 (0.02)
Passed bias filter:                      124  (0.0302292); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.36u 0.19s 00:00:00.55 Elapsed: 00:00:00.44
# Mc/sec: 1265.90
//
Query:       MMETSP1137-20121227|7639_1  [L=145]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (145 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        53  (0.0129205); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.16s 00:00:00.32 Elapsed: 00:00:00.36
# Mc/sec: 531.62
//
Query:       MMETSP1137-20121227|7640_1  [L=547]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.8e-89  295.5   0.8    1.4e-88  294.8   0.5    1.2  1  TIGR02749 prenyl_cyano: solanesyl diphosphate synthase
    2.2e-52  176.0   0.0    3.1e-52  175.5   0.0    1.1  1  TIGR02748 GerC3_HepT: heptaprenyl diphosphate synthase component II


Domain annotation for each model (and alignments):
>> TIGR02749  prenyl_cyano: solanesyl diphosphate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  294.8   0.5     7e-92   1.4e-88       7     301 ..     139     443 ..     135     454 .. 0.94

  Alignments for each domain:
  == domain 1    score: 294.8 bits;  conditional E-value: 7e-92
   TIGR02749   7 lapvekdlealtknlkslvGakhPilsaaaehlfeag....GkrlrPaivllvsrataeeeelta....rhrrlaeitelihtaslvhddvvdesdvrrgvetvhslfdtrvavlaGdflfaqaswylanlenlevvkllskvikdfaeGeikqglnrfdsdlsledyleksyyktaslvaasskaaavlse..vdsevaedlyeyGkhlGlafqvvddildftgsteklGkPaasdlkkGnltaPvlfaleeepklselierefsekkdlekalelvkeskaikkarelakekaqlalkslevl 301
                 +++v+k+le l+  ++  + a+   l  aa+h+f ag    Gkr+rP ivllv +at++++el +    r+  la ite+ihtasl+hddv+d +d+rrg  +vh++f+++ avl+Gdfl+a+as  la+l++ +vv+ ++k ++ + +Ge+ q  +  d  ls+e yl ksy+ktasl+a s+k+ a+ls   + s+v+ +  ++G h+G+afqv+dd+ldftg++++lGkP  +d+  G  taPvl+a +e p+l+ l  r+f +++d+++a e+v  s++++++ ela+++aq+a+++  ++
  MMETSP1137-20121227|7640_1 139 FKLVQKQLEPLSAVVRAQLDAESXTLGQAAQHFFGAGsarqGKRVRPVIVLLVGQATQKSSELDEdllrRRVELASITEMIHTASLIHDDVLDAADTRRGDFAVHKRFNNKAAVLSGDFLLARASVALAKLGDPQVVREMAKSLEALVQGELMQLRSSEDERLSMEYYLTKSYCKTASLMAYSCKSSALLSGhaLTSDVTVAAEKFGYHFGIAFQVIDDLLDFTGTSDTLGKPGLQDMSLGLSTAPVLYAADEFPELKALXARKFGQEGDVQHACEIVLGSQGLRRTEELATHHAQAAVDAAALF 443
                 789********************************9877779****************9998765221144469********************************************************************************************************************96225788999999**********************************************************************************************9876554 PP

>> TIGR02748  GerC3_HepT: heptaprenyl diphosphate synthase component II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  175.5   0.0   1.5e-55   3.1e-52       7     293 ..     140     438 ..     136     455 .. 0.85

  Alignments for each domain:
  == domain 1    score: 175.5 bits;  conditional E-value: 1.5e-55
   TIGR02748   7 sflkedieviekelekavqaeaevlkeaalellkaG....GkrirPvfvllagklg....dydldklk...kvavalelihmaslvhddviddaelrrGketikskwdnriamytGdyllaksletiteiedprvhkilsktivevclGeieqikdkynfdqnlrtylrrikrktalliaascqlGaivaga..deeivkklyyfgyyvGmsyqiiddildfvgteeelGkPaGedllqGnvtlPvlyaledea.lkkklekvleettaeeleelieevkksdaiekalavsdlylkkale 293
                 + +++ +e + + ++  + ae  +l +aa +++ aG    Gkr+rPv+vll g+ +    + d d l+   ++a   e+ih asl+hddv+d+a+ rrG  +++ +++n+ a+ +Gd+lla++   ++++ dp+v + ++k++  + +Ge+ q++   +   ++  yl +   kta l+a sc+  a+ +g   +++ + +  +fgy+ G+++q+idd+ldf+gt++ lGkP  +d+  G  t Pvlya ++   lk+  ++ +   ++ ++++  e v  s+++ +++++++ + + a++
  MMETSP1137-20121227|7640_1 140 KLVQKQLEPLSAVVRAQLDAESXTLGQAAQHFFGAGsarqGKRVRPVIVLLVGQATqkssELDEDLLRrrvELASITEMIHTASLIHDDVLDAADTRRGDFAVHKRFNNKAAVLSGDFLLARASVALAKLGDPQVVREMAKSLEALVQGELMQLRSSEDERLSMEYYLTKSYCKTASLMAYSCKSSALLSGHalTSDVTVAAEKFGYHFGIAFQVIDDLLDFTGTSDTLGKPGLQDMSLGLSTAPVLYAADEFPeLKALXARKF--GQEGDVQHACEIVLGSQGLRRTEELATHHAQAAVD 438
                 6678999999999999*******************988889**********99876321123333343212567778*****************************************************************************************************************97224666777889*********************************************988662444333333..35566777777788888888888888887777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (547 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        96  (0.0234032); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.36u 0.17s 00:00:00.53 Elapsed: 00:00:00.57
# Mc/sec: 1244.79
//
Query:       MMETSP1137-20121227|7641_1  [L=547]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (547 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       223  (0.0543637); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.14s 00:00:00.51 Elapsed: 00:00:00.77
# Mc/sec: 937.64
//
Query:       MMETSP1137-20121227|7642_1  [L=266]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0021   15.5   0.0     0.0072   13.8   0.0    1.8  2  TIGR03890 nif11_cupin: nif11 domain/cupin domain protein


Domain annotation for each model (and alignments):
>> TIGR03890  nif11_cupin: nif11 domain/cupin domain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.0   1.7e-06    0.0072      98     154 ..      35      90 ..      15     103 .. 0.74
   2 ?   -1.7   0.0       0.1   4.2e+02     107     129 ..     185     207 ..     180     230 .. 0.67

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 1.7e-06
   TIGR03890  98 iesnaassp.egeWydqaeteWvlllrGsarlrlkdpdelvdlsvGdqlllaphrrhr 154
                 i+ +++++p ++ W+     eW+ +l+G  +lr +d   ++ + +Gd+ +++   r +
  MMETSP1137-20121227|7642_1  35 IARCSVTAPtSEPWLVLDYDEWICVLKGVVHLRHAD--GVLVVNAGDTAYVKRGERFK 90 
                 5556666651577***************98887665..66677899999997766655 PP

  == domain 2    score: -1.7 bits;  conditional E-value: 0.1
   TIGR03890 107 egeWydqaeteWvlllrGsarlr 129
                 ++++y+  e +Wv l+   ++l+
  MMETSP1137-20121227|7642_1 185 ANHFYQSVEGDWVCLVLSRSKLA 207
                 56788889999998765555444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (266 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       117  (0.0285227); expected 82.0 (0.02)
Passed bias filter:                      117  (0.0285227); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.24u 0.17s 00:00:00.41 Elapsed: 00:00:00.59
# Mc/sec: 595.07
//
Query:       MMETSP1137-20121227|7643_1  [L=811]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (811 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       108  (0.0263286); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.50u 0.16s 00:00:00.66 Elapsed: 00:00:00.52
# Mc/sec: 2058.52
//
Query:       MMETSP1137-20121227|7644_1  [L=322]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.01   13.0   0.0        1.1    6.3   0.0    2.3  2  TIGR02408 ectoine_ThpD: ectoine hydroxylase


Domain annotation for each model (and alignments):
>> TIGR02408  ectoine_ThpD: ectoine hydroxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.0    0.0011       4.6      17      51 ..       9      43 ..       2      64 .. 0.76
   2 ?    6.3   0.0   0.00028       1.1     144     173 ..     161     190 ..     151     198 .. 0.86

  Alignments for each domain:
  == domain 1    score: 4.3 bits;  conditional E-value: 0.0011
   TIGR02408 17 laakdlqsyerdGflvlenlvaddevaalraeler 51
                ++a++   ++ +Gflvl n+++++ev a +  ++ 
  MMETSP1137-20121227|7644_1  9 FTAHEKFLFDLNGFLVLRNVLSSEEVDAANRAIDV 43
                55666667999***************998877764 PP

  == domain 2    score: 6.3 bits;  conditional E-value: 0.00028
   TIGR02408 144 ravsvsialtenyetnGslmvvpGshktfl 173
                   ++vs+ l +  e +G++ vv Gshk  +
  MMETSP1137-20121227|7644_1 161 SLLAVSVQLCDHAEGDGGFCVVRGSHKLNF 190
                 56899*********************9655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (322 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        96  (0.0234032); expected 82.0 (0.02)
Passed bias filter:                       96  (0.0234032); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.27u 0.15s 00:00:00.42 Elapsed: 00:00:00.27
# Mc/sec: 1574.09
//
Query:       MMETSP1137-20121227|7645_1  [L=626]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.1e-50  170.1   9.9    7.6e-26   88.8   2.5    3.3  2  TIGR03864 PQQ_ABC_ATP: ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system
    2.9e-41  139.5   0.4    3.4e-20   70.4   0.2    2.7  2  TIGR01188 drrA: daunorubicin resistance ABC transporter, ATP-binding protein
    1.5e-37  127.5   0.0    8.8e-22   75.5   0.0    2.1  2  TIGR02857 CydD: thiol reductant ABC exporter, CydD subunit
    1.6e-34  117.3   1.5    1.8e-18   64.8   0.1    3.5  2  TIGR02673 FtsE: cell division ATP-binding protein FtsE
    1.2e-33  114.4  11.6    3.7e-19   66.6   2.3    3.1  2  TIGR02868 CydC: thiol reductant ABC exporter, CydC subunit
    8.7e-33  111.2   5.0    7.2e-16   56.0   0.8    3.6  2  TIGR01166 cbiO: cobalt ABC transporter, ATP-binding protein
      2e-31  107.1   0.9    1.8e-15   55.0   0.1    3.0  2  TIGR02982 heterocyst_DevA: ABC exporter ATP-binding subunit, DevA family
    3.6e-31  106.1   2.3    7.4e-09   33.2   0.0    4.1  4  TIGR03608 L_ocin_972_ABC: putative bacteriocin export ABC transporter, lactococcin 972 group
      5e-31  105.5   1.3    4.5e-19   66.0   0.0    2.7  2  TIGR03375 type_I_sec_LssB: type I secretion system ATPase
    6.2e-31  105.4   4.7    1.7e-15   54.8   0.2    2.6  2  TIGR03873 F420-0_ABC_ATP: proposed F420-0 ABC transporter, ATP-binding protein
    1.2e-29  101.5   0.0    4.2e-15   53.8   0.0    3.3  3  TIGR03740 galliderm_ABC: lantibiotic protection ABC transporter, ATP-binding subunit
    1.4e-29  101.1   0.0    3.2e-07   27.8   0.0    4.0  4  TIGR02315 ABC_phnC: phosphonate ABC transporter, ATP-binding protein
    3.3e-29  100.0   0.7      4e-15   54.0   0.1    3.6  2  TIGR00960 3a0501s02: type II secretory pathway family protein
    2.5e-28   97.0   2.5    3.5e-15   54.0   0.0    3.1  3  TIGR00968 3a0106s01: sulfate ABC transporter, ATP-binding protein
    1.4e-27   94.8   0.0    1.8e-13   48.4   0.0    3.1  2  TIGR03522 GldA_ABC_ATP: gliding motility-associated ABC transporter ATP-binding subunit GldA
    2.2e-27   94.0   1.1    2.4e-14   51.3   0.0    3.3  3  TIGR02769 nickel_nikE: nickel import ATP-binding protein NikE
      4e-27   93.0   0.6    6.5e-14   49.7   0.0    3.3  3  TIGR02324 CP_lyasePhnL: phosphonate C-P lyase system protein PhnL
    1.3e-26   91.3   0.6      5e-13   46.9   0.3    3.0  2  TIGR02211 LolD_lipo_ex: lipoprotein releasing system, ATP-binding protein
    8.3e-26   88.4   0.0    5.9e-14   49.3   0.0    2.1  2  TIGR02203 MsbA_lipidA: lipid A export permease/ATP-binding protein MsbA
    2.6e-25   87.1   3.7    8.4e-12   43.0   0.3    3.7  2  TIGR01277 thiQ: thiamine ABC transporter, ATP-binding protein
    2.9e-25   86.7   1.4    9.4e-12   42.1   0.2    3.4  3  TIGR00955 3a01204: pigment precursor permease
    5.7e-25   85.7   2.4    4.5e-06   23.3   0.2    4.1  4  TIGR03719 ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family
    3.2e-24   83.5   8.2    5.2e-13   46.9   2.1    3.7  2  TIGR01189 ccmA: heme ABC exporter, ATP-binding protein CcmA
    5.7e-24   82.5   0.1    2.6e-11   40.7   0.0    2.4  2  TIGR02204 MsbA_rel: ABC transporter, permease/ATP-binding protein
    6.2e-24   82.7   6.6    1.1e-12   45.7   1.2    3.2  2  TIGR02142 modC_ABC: molybdate ABC transporter, ATP-binding protein
      4e-23   79.3   1.7    5.9e-13   45.7   0.0    2.6  2  TIGR03796 NHLM_micro_ABC1: NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein
    5.2e-22   76.0   7.4    8.8e-11   39.2   0.2    3.3  2  TIGR01288 nodI: nodulation ABC transporter NodI
    6.5e-22   75.8   0.0    1.5e-11   41.7   0.0    3.2  2  TIGR02314 ABC_MetN: D-methionine ABC transporter, ATP-binding protein
    7.2e-22   75.9   5.2    3.8e-11   40.6   0.1    3.4  3  TIGR03265 PhnT2: putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein
    1.3e-21   75.2   0.2      1e-10   39.5   0.0    3.2  2  TIGR03411 urea_trans_UrtD: urea ABC transporter, ATP-binding protein UrtD
    3.3e-21   73.6   0.1    3.4e-10   37.5   0.0    3.2  3  TIGR02770 nickel_nikD: nickel import ATP-binding protein NikD
    1.4e-20   71.3   0.0      1e-11   42.0   0.0    3.2  2  TIGR01193 bacteriocin_ABC: ABC-type bacteriocin transporter
    1.6e-20   71.0   0.0    4.2e-06   23.4   0.0    3.9  4  TIGR01842 type_I_sec_PrtD: type I secretion system ATPase
    1.4e-19   68.4   0.4    7.7e-06   23.3   0.0    4.1  4  TIGR01978 sufC: FeS assembly ATPase SufC
    3.4e-18   63.7   1.8      1e-06   25.9   0.1    4.0  3  TIGR01186 proV: glycine betaine/L-proline transport ATP binding subunit
    5.4e-18   62.9   0.8    1.3e-09   35.4   0.0    3.1  2  TIGR03005 ectoine_ehuA: ectoine/hydroxyectoine ABC transporter, ATP-binding protein EhuA
    7.9e-18   62.0   0.0    5.5e-08   29.5   0.0    3.1  3  TIGR02633 xylG: D-xylose ABC transporter, ATP-binding protein
    8.7e-18   62.6   3.1    2.3e-09   35.0   0.1    3.5  3  TIGR01184 ntrCD: nitrate ABC transporter, ATP-binding proteins C and D
    9.2e-18   62.2   9.3    4.6e-10   36.9   0.1    3.4  3  TIGR01187 potA: polyamine ABC transporter, ATP-binding protein
    1.6e-17   61.6   0.4    2.4e-08   31.5   0.0    3.8  2  TIGR03410 urea_trans_UrtE: urea ABC transporter, ATP-binding protein UrtE
    3.4e-17   60.7   9.2    1.4e-07   29.3   0.6    3.9  3  TIGR03771 anch_rpt_ABC: anchored repeat-type ABC transporter, ATP-binding subunit
    1.7e-15   54.4   1.5    3.9e-06   23.5   0.0    4.0  4  TIGR03797 NHLM_micro_ABC2: NHLM bacteriocin system ABC transporter, ATP-binding protein
    4.2e-15   53.1   1.1     0.0021   14.5   0.0    4.1  4  TIGR03269 met_CoM_red_A2: methyl coenzyme M reductase system, component A2
    6.2e-15   53.0   0.1    2.3e-05   21.7   0.0    3.9  3  TIGR00972 3a0107s01c2: phosphate ABC transporter, ATP-binding protein
      1e-14   51.6   0.1    0.00011   18.4   0.1    3.7  3  TIGR01846 type_I_sec_HlyB: type I secretion system ATPase
      1e-14   52.4   2.1    3.8e-08   30.9   0.1    2.4  2  TIGR02323 CP_lyasePhnK: phosphonate C-P lyase system protein PhnK
    1.4e-14   51.8   6.1    3.9e-07   27.2   1.8    2.9  2  TIGR03258 PhnT: 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT
      2e-14   50.6   4.0    1.7e-06   24.4   0.1    3.9  3  TIGR00958 3a01208: antigen peptide transporter 2
    3.5e-14   50.4   8.6    1.4e-07   28.7   2.0    3.3  2  TIGR03415 ABC_choXWV_ATP: choline ABC transporter, ATP-binding protein
    1.5e-11   41.5   0.0    1.1e-06   25.4   0.0    3.7  3  TIGR01192 chvA: glucan exporter ATP-binding protein
      4e-11   38.3   0.2      3e-06   22.2   0.0    2.7  2  TIGR01257 rim_protein: rim ABC transporter
      7e-11   39.2   1.8    0.00053   16.5   0.0    3.9  3  TIGR01194 cyc_pep_trnsptr: cyclic peptide transporter
    1.8e-10   36.9   5.8    6.9e-05   18.4   0.2    3.4  3  TIGR00956 3a01205: pleiotropic drug resistance family protein
    6.3e-10   35.0   2.1    4.7e-05   18.8   0.3    3.8  3  TIGR01271 CFTR_protein: cystic fibrosis transmembrane conductor regulator (CFTR)
      2e-08   30.0   2.7       0.02   10.1   0.0    4.0  4  TIGR00957 MRP_assoc_pro: multi drug resistance-associated protein (MRP)
    2.9e-07   27.1   0.1     0.0042   13.4   0.0    2.2  2  TIGR00954 3a01203: peroxysomal long chain fatty acyl transporter
    2.5e-06   25.2   0.1      0.028   12.0   0.1    2.3  2  TIGR00231 small_GTP: small GTP-binding protein domain
    3.3e-06   24.3   5.8       0.35    7.8   0.0    4.1  4  TIGR00611 recf: DNA replication and repair protein RecF
    0.00089   17.4   0.1       0.12   10.4   0.0    2.4  2  TIGR02528 EutP: ethanolamine utilization protein, EutP
     0.0015   15.6   1.1      0.091    9.7   0.2    2.2  2  TIGR03819 heli_sec_ATPase: helicase/secretion neighborhood ATPase
  ------ inclusion threshold ------
      0.013   11.5   1.7       0.45    6.4   0.0    3.3  4  TIGR00630 uvra: excinuclease ABC subunit A
      0.015   12.3   0.0       0.55    7.2   0.0    2.1  2  TIGR00064 ftsY: signal recognition particle-docking protein FtsY
      0.017   11.4   0.5       0.29    7.3   0.1    2.2  2  TIGR03185 DNA_S_dndD: DNA sulfur modification protein DndD
      0.018   12.5   0.4        3.4    5.2   0.0    2.4  2  TIGR02322 phosphon_PhnN: phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN
      0.034   11.6   0.0       0.51    7.8   0.0    2.1  2  TIGR01618 phage_P_loop: phage nucleotide-binding protein
      0.069    9.1   3.8          1    5.2   0.2    2.1  2  TIGR00929 VirB4_CagE: type IV secretion/conjugal transfer ATPase, VirB4 family


Domain annotation for each model (and alignments):
>> TIGR03864  PQQ_ABC_ATP: ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.8   0.3   1.8e-25   1.1e-23      14     196 ..      57     240 ..      48     257 .. 0.81
   2 !   88.8   2.5   1.2e-27   7.6e-26       1     217 [.     319     549 ..     319     566 .. 0.82

  Alignments for each domain:
  == domain 1    score: 81.8 bits;  conditional E-value: 1.8e-25
   TIGR03864  14 rralddvsltvakgefvaLLGpnGaGkstLfslltrLyeakegeikvaGldlrrapkealarlGvvfqqstlDldlsveqnlryhaa.LhG.lsraea...eerieealarlglaeraeekvreLnGGhrrrveiarallhePklLLlDeatvGLDiesraalveevrelvreeglsvLWathlvdev 196
                 +  l+dvs+++++g+ ++LLG nGaGkstL+s++ +    +e +  v+G    ++++ a +r+ +   + t      v +n+ y a  +   ++++++    er++++++ l++ e+   ++ +++ G+rrrv i   l+   ++LLlDe t  LD+ +r++l++ +re ++e+g++ ++ th++d +
  MMETSP1137-20121227|7645_1  57 KLQLRDVSMALPRGARCMLLGANGAGKSTLMSVIGGRHLVEEESAMVLGRPAFHDTSLA-SRVALLTGNWTHT-VSFVGHNVPYQAMeVSRlIASHSVgvdPERVRRLVQLLEVDEK--WNLTTVSDGQRRRVQILCKLIKPCEVLLLDEITTDLDLLARQDLLQFLREESEERGVCTIYCTHIFDGL 240
                 55799*******************************99999999******998876544.5566665555554.456999****995222213333331114555555555555554..45899*************************************************************976 PP

  == domain 2    score: 88.8 bits;  conditional E-value: 1.2e-27
   TIGR03864   1 aleveglsfay..gkrralddvsltvakgefvaLLGpnGaGkstLfslltrLyeakegeikvaGldlrra.pkeal.........arlGvvfqqstlDldlsveqnl.ryhaaL..hGlsraeaeerieealarlglaeraeekvreLnGGhrrrveiarallhePklLLlDeatvGLDiesraalveevrelvreeglsvLWathlvdeveae.drlvvlhkGkvlaqGaaa 217
                 a++v++ls  y  +k++al++vs+++++g  + L+G nGaGk+tL++ll +    ++g++ v+G++  ++ + + l         +++  v     +  d+s+   + ++  aL   G+s+a +e+r +++++ l+l    e ++++++ G+rrr  +   ll   +lLLlDe t  LD+ sr+al++ +re +  +g +v+++th++d +++   +l+ +++G v+  G  +
  MMETSP1137-20121227|7645_1 319 AIAVHDLSWGYtgAKSAALHSVSFELERGVRCLLVGANGAGKTTLLKLLGGKHMLPRGTVDVLGYSAFHDtELNTLtsllsgdwtRQVACVGNGVPFQADFSMGFMVgSFVEALvrDGMSEAVVEQRKARLVELLDLDM--EWRLHKVSDGQRRRAQLFLKLLRPSQLLLLDEVTTDLDVLSRQALLQFLREESDLRGTTVVYSTHIFDGLDDWpTHLLHMKEGTVAYVGPLQ 549
                 578899998884346789**********************************************98765414455511122222245566666666777777766652455566557*************999999974..678999****************************************************************9852678889999999988654 PP

>> TIGR01188  drrA: daunorubicin resistance ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.6   0.0   1.5e-20   9.4e-19       9     203 ..      60     256 ..      56     267 .. 0.91
   2 !   70.4   0.2   5.4e-22   3.4e-20       6     213 ..     334     553 ..     329     595 .. 0.82

  Alignments for each domain:
  == domain 1    score: 65.6 bits;  conditional E-value: 1.5e-20
   TIGR01188   9 vdgvnlkveegevfglLGPnGAGKtttikmLttllkPdsGtarvaGyDvvrepdevRrsigvvpq...kasvdedLtarenlellgelyglpkkeaeeraeellelvelkeaadkkvktysgGmrrrlelaasliaqPevlfLDEPtiGLDprtrraiwdlieelkke.gvtilltthyleeadkladrvaiidkGkii 203
                 +++v++ +++g    lLG nGAGK+t+++++ +    ++ +a+v G    ++ + + r   ++++   ++s   +   ++ +e+   +   +  +  er+++l++l+e+ e+   ++ t s G+rrr+++ + li+  evl LDE t+ LD  +r+ + ++++e  +e gv ++ +th ++  d    ++a ++ G+++
  MMETSP1137-20121227|7645_1  60 LRDVSMALPRGARCMLLGANGAGKSTLMSVIGGRHLVEEESAMVLGRPAFHDTSLASRVALLTGNwthTVSFVGHNVPYQAMEVSRLIASHSVGVDPERVRRLVQLLEVDEKW--NLTTVSDGQRRRVQILCKLIKPCEVLLLDEITTDLDLLARQDLLQFLREESEErGVCTIYCTHIFDGLDGWPTHIAYLSGGEMV 256
                 789******************************99999**************998888877777522156666667778999999999999999*************998865..689**********************************************99999****************99999999999887 PP

  == domain 2    score: 70.4 bits;  conditional E-value: 5.4e-22
   TIGR01188   6 fkAvdgvnlkveegevfglLGPnGAGKtttikmLttllkPdsGtarvaGyDvvrepd..........evRrsigvvpqkasvdedLtarenlellgely......glpkkeaeeraeellelvelkeaadkkvktysgGmrrrlelaasliaqPevlfLDEPtiGLDprtrraiwdlieelkke.gvtilltthyleeadkladrvaiidkGkiiaedtpeeLKe 213
                   A+++v++++e+g    l+G nGAGKtt++k+L +      Gt+ v Gy   ++ +          +  r+++ v++ +  + d +       +g++       g+++++ e+r ++l+el++l    + ++++ s G+rrr +l   l+   ++l LDE t+ LD+ +r+a+ ++++e  +  g+t++ +th ++  d    ++  +++G+++  +  +  ++
  MMETSP1137-20121227|7645_1 334 SAALHSVSFELERGVRCLLVGANGAGKTTLLKLLGGKHMLPRGTVDVLGYSAFHDTElntltsllsgDWTRQVACVGNGVPFQADFSMGFM---VGSFVealvrdGMSEAVVEQRKARLVELLDLDM--EWRLHKVSDGQRRRAQLFLKLLRPSQLLLLDEVTTDLDVLSRQALLQFLREESDLrGTTVVYSTHIFDGLDDWPTHLLHMKEGTVAYVGPLQLARK 553
                 679********************************9999899***********99987644443333345666666666666666654333...333322223569*******************75..567999**********************************************9999*********************9999999988776655444 PP

>> TIGR02857  CydD: thiol reductant ABC exporter, CydD subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.8   0.0   8.8e-16   5.4e-14     336     510 ..      58     228 ..      10     238 .. 0.85
   2 !   75.5   0.0   1.4e-23   8.8e-22     306     515 ..     304     522 ..     286     530 .. 0.85

  Alignments for each domain:
  == domain 1    score: 49.8 bits;  conditional E-value: 8.8e-16
   TIGR02857 336 palkevsltvepgelvalvGaSGaGKstllklllgfvepteGailvngaelaeldadswrkqiawvpQkPllfegtvaenirlarkdaseaevkealeragld.elvkalpqgleteiGergagLSgGqrqRlaLArallrdapllllDEPtahLDaeteaevlealrelaegrtv 510
                   l++vs++++ g +  l+Ga GaGKstl++++ g   ++e++  v g+   +++  s+ +++a +  + + +   v +n+  +  + s+     a + +g+d e v+ l q le     + + +S Gqr+R+ +   l++++++lllDE t  LD  + +++l+ lre +e+r v
  MMETSP1137-20121227|7645_1  58 LQLRDVSMALPRGARCMLLGANGAGKSTLMSVIGGRHLVEEESAMVLGR--PAFHDTSLASRVALLTGNWTHTVSFVGHNVPYQAMEVSRL---IASHSVGVDpERVRRLVQLLEVDEKWNLTTVSDGQRRRVQILCKLIKPCEVLLLDEITTDLDLLARQDLLQFLREESEERGV 228
                 46899*****************************************9*9..78888899************999*********99999998...566777776345677777775555556789********************************************99877655 PP

  == domain 2    score: 75.5 bits;  conditional E-value: 1.4e-23
   TIGR02857 306 qpeaekapltaaassslelenvsvayegrk.palkevsltvepgelvalvGaSGaGKstllklllgfvepteGailv.........ngaelaeldadswrkqiawvpQ.kPllfegtvaenirlarkdaseaevkealeragldelvkalpqgleteiGergagLSgGqrqRlaLArallrdapllllDEPtahLDaeteaevlealrela..egrtvllvaH 515
                  p+a+  ++  +   ++ ++++s  y g+k +al++vs+++e g +  lvGa GaGK+tllkll g     +G++ v         + ++l++l + +w +q+a v+   P+  + ++   +        ea v++ +++a +++  + l + l+  +  r +++S Gqr+R  L   llr+++llllDE t  LD  + +++l+ lre +  +g tv+  +H
  MMETSP1137-20121227|7645_1 304 TPTASCGDVVPKGGPAIAVHDLSWGYTGAKsAALHSVSFELERGVRCLLVGANGAGKTTLLKLLGGKHMLPRGTVDVlgysafhdtELNTLTSLLSGDWTRQVACVGNgVPFQADFSMGFMVG----SFVEALVRDGMSEAVVEQRKARLVELLDLDMEWRLHKVSDGQRRRAQLFLKLLRPSQLLLLDEVTTDLDVLSRQALLQFLREESdlRGTTVVYSTH 522
                 5555566666666669**************9**********************************************999999655445777788889*******986256666666665554....45566677777777777777777778889999999**********************************************987668999999999 PP

>> TIGR02673  FtsE: cell division ATP-binding protein FtsE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.2   0.0   3.5e-15   2.2e-13      15     195 ..      57     235 ..      43     253 .. 0.85
   2 !   64.8   0.1   2.9e-20   1.8e-18       2     213 ..     320     540 ..     319     541 .. 0.80

  Alignments for each domain:
  == domain 1    score: 48.2 bits;  conditional E-value: 3.5e-15
   TIGR02673  15 veaLkdvslkiekgeflfltGasGaGkttllklllgaekpsrGevevagedvarlr..erelpllRrkigvvfqDfkllkdrtvlenvalalevrgkkeeeiqkrveevlelvgledkakalpeelsgGeqqRvaiaRaivnkPelllaDePtGnlDdelserildllke.lnkrGttvivath 195
                    L+dvs+ + +g  + l Ga GaGk+tl+ ++ g++  ++ +  v g+   + +   ++++ll    g       ++ +   ++ + ++  ++ ++     +rv+++++l+++++k + +  ++s G + Rv i   +++  e+ll De t +lD    +++l+ l+e  ++rG+  i  th
  MMETSP1137-20121227|7645_1  57 KLQLRDVSMALPRGARCMLLGANGAGKSTLMSVIGGRHLVEEESAMVLGRPAFHDTslASRVALLT---GNWTHTVSFVGHNVPYQAMEVSRLIASHSVGVDPERVRRLVQLLEVDEKWNLT--TVSDGQRRRVQILCKLIKPCEVLLLDEITTDLDLLARQDLLQFLREeSEERGVCTIYCTH 235
                 5679*********************************************98655431135555554...4444556778888888888888888888999999**************99875..79****************************************997527789********9 PP

  == domain 2    score: 64.8 bits;  conditional E-value: 2.9e-20
   TIGR02673   2 ielekvskeya.agveaLkdvslkiekgeflfltGasGaGkttllklllgaekpsrGevevaged.varlrerelpll.....Rrkigvv.....fq.DfkllkdrtvlenvalalevrgkkeeeiqkrveevlelvgledkakalpeelsgGeqqRvaiaRaivnkPelllaDePtGnlDdelserildllke.lnkrGttvivathdeelvervkkrvlelekg 213
                 i ++++s  y+ a+ +aL++vs+++e+g  + l+Ga GaGkttllkll g+++  rG+v v g + +++ + ++l++l      r+++ v     fq Df +     ++     al  +g++e+ +++r  +++el++l+   +   +++s G + R  +   +++  +lll De t +lD    + +l+ l+e    rGttv+ +th  + ++   +++l++++g
  MMETSP1137-20121227|7645_1 320 IAVHDLSWGYTgAKSAALHSVSFELERGVRCLLVGANGAGKTTLLKLLGGKHMLPRGTVDVLGYSaFHDTELNTLTSLlsgdwTRQVACVgngvpFQaDFSMGF---MVGSFVEALVRDGMSEAVVEQRKARLVELLDLDM--EWRLHKVSDGQRRRAQLFLKLLRPSQLLLLDEVTTDLDVLSRQALLQFLREeSDLRGTTVVYSTHIFDGLDDWPTHLLHMKEG 540
                 56778888898567899********************************************9954145555566655534433688876622222554554422...233344577789999999*************985..555689*****************************************997615679*********999999998888888887 PP

>> TIGR02868  CydC: thiol reductant ABC exporter, CydC subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.5   0.8   4.4e-16   2.8e-14     350     528 ..      59     235 ..      42     236 .. 0.82
   2 !   66.6   2.3   5.9e-21   3.7e-19     327     528 ..     312     522 ..     277     524 .. 0.81

  Alignments for each domain:
  == domain 1    score: 50.5 bits;  conditional E-value: 4.4e-16
   TIGR02868 350 vlkgvsldlepGervavvGasGaGKstLlallaglldplkGevtldgvsvaslsesevrrvvsv.laqdaHlFdttvreNlrlarpdatdeellaaLervgLa.dwlraLpdGldtklgeggarlSGGerqRlalARaLladapvllLDEPtehLDaeteeelledLlaaeegrt..vvlvth 528
                  l++vs+ l+ G+r  ++Ga GaGKstL++++ g    ++ + ++ g ++ +  ++ ++ +v++ + +  H   + v  N+   + +++    l a ++vg   + +r+L + l+ + + + +++S G+r+R+ +   L+++ +vllLDE t +LD  ++++ll+ L++ +e+r   ++  th
  MMETSP1137-20121227|7645_1  59 QLRDVSMALPRGARCMLLGANGAGKSTLMSVIGGRHLVEEESAMVLGRPAFH--DTSLASRVALlTGNWTHT-VSFVGHNVPYQAMEVSR---LIASHSVGVDpERVRRLVQLLEVDEKWNLTTVSDGQRRRVQILCKLIKPCEVLLLDEITTDLDLLARQDLLQFLREESEERGvcTIYCTH 235
                 4899****************************99777777777777755544..455655555505566776.689*****988877765...566778888735799999999999999************************************************988888844566666 PP

  == domain 2    score: 66.6 bits;  conditional E-value: 5.9e-21
   TIGR02868 327 aaasekptlelrdlsvsypgaee.vlkgvsldlepGervavvGasGaGKstLlallaglldplkGevtldgvsvaslsesevrrvvs.....vlaqdaHl.....FdttvreNlrlarpdatdeellaaLervgLadwlraLpdGldtklgeggarlSGGerqRlalARaLladapvllLDEPtehLDaeteeelledLl..aaeegrtvvlvth 528
                  ++++ p + ++dls +y ga+  +l+ vs++le G r  +vGa GaGK+tLl+ll g     +G+v + g+s+ +  ++e++ + s     ++ q a +     F+++ +   +++     ++ + + ++++  ++  ++L + ld +++ + + +S G+r+R  l   Ll + ++llLDE t +LD+  +++ll+ L+  + ++g+tvv  th
  MMETSP1137-20121227|7645_1 312 VVPKGGPAIAVHDLSWGYTGAKSaALHSVSFELERGVRCLLVGANGAGKTTLLKLLGGKHMLPRGTVDVLGYSAFH--DTELNTLTSllsgdWTRQVACVgngvpFQADFSMGFMVGS--FVEALVRDGMSEAVVEQRKARLVELLDLDMEWRLHKVSDGQRRRAQLFLKLLRPSQLLLLDEVTTDLDVLSRQALLQFLReeSDLRGTTVVYSTH 522
                 3444899***************99**********************************99999*****99976543..5555555551113345555555555557777777777764..46777788888888888888899999******************************************************655667888998888 PP

>> TIGR01166  cbiO: cobalt ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.2   0.1   8.5e-17   5.3e-15       8     185 ..      60     235 ..      55     239 .. 0.78
   2 !   56.0   0.8   1.2e-17   7.2e-16       5     186 ..     334     523 ..     330     526 .. 0.78

  Alignments for each domain:
  == domain 1    score: 53.2 bits;  conditional E-value: 8.5e-17
   TIGR01166   8 lkglnlavergevlallGanGaGkstlllhlnGllrPksGkvlldGeeldys.....rkgll..elrkkvalvlqdpddqlfaadvdedvafgplnlGlseaeverrvrealaavdisgleerpthllsgGekkrvaiagavalrpdvllldePtagldpaGaeqlleilrkl.reeGktvvisth 185
                 l+++++a+ rg +  llGanGaGkstl++ + G    ++   ++ G++  ++     r  ll  ++ ++v++v  +   q  a +v++ +a     +G+++++v+r v    ++++++  e+    ++s G+++rv i   ++   +vlllde t++ld   ++ ll+ lr+  +e G   + +th
  MMETSP1137-20121227|7645_1  60 LRDVSMALPRGARCMLLGANGAGKSTLMSVIGGRHLVEEESAMVLGRPAFHDtslasRVALLtgNWTHTVSFVGHNVPYQ--AMEVSRLIA--SHSVGVDPERVRRLV----QLLEVD--EKWNLTTVSDGQRRRVQILCKLIKPCEVLLLDEITTDLDLLARQDLLQFLREEsEERGVCTIYCTH 235
                 89*******************************98888888888899887761122144554233566677776666666..445666665..567788888777766....455555..4567889*******************************************9751567999999999 PP

  == domain 2    score: 56.0 bits;  conditional E-value: 1.2e-17
   TIGR01166   5 aevlkglnlavergevlallGanGaGkstlllhlnGllrPksGkvlldGeeldysrk..gll.....elrkkvalvlqdpddql.faa..dvdedvafgplnlGlseaeverrvrealaavdisgleerpthllsgGekkrvaiagavalrpdvllldePtagldpaGaeqlleilrklre.eGktvvisthd 186
                 + +l+++++++erg +  l+GanGaGk+tll+ l G      G+v + G +  ++ +   l+     ++ ++va+v      q  f+    v + v  +++  G+sea ve+r    ++++d++   e   h++s G+++r  +   +   +++lllde t++ld   ++ ll+ lr+  +  G+tvv sth 
  MMETSP1137-20121227|7645_1 334 SAALHSVSFELERGVRCLLVGANGAGKTTLLKLLGGKHMLPRGTVDVLGYSAFHDTElnTLTsllsgDWTRQVACVGNGVPFQAdFSMgfMVGSFV-EALVRDGMSEAVVEQRKARLVELLDLDM--EWRLHKVSDGQRRRAQLFLKLLRPSQLLLLDEVTTDLDVLSRQALLQFLREESDlRGTTVVYSTHI 523
                 5689********************************999999***999988777653223432223457899999976644333143310233333.3556679999999999988888888763..556899********99999998888999*********************9877648*********5 PP

>> TIGR02982  heterocyst_DevA: ABC exporter ATP-binding subunit, DevA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.2   0.0   1.7e-15     1e-13       3     200 ..      42     235 ..      40     241 .. 0.81
   2 !   55.0   0.1   2.9e-17   1.8e-15      11     219 ..     327     542 ..     319     543 .. 0.76

  Alignments for each domain:
  == domain 1    score: 49.2 bits;  conditional E-value: 1.7e-15
   TIGR02982   3 kirelnhyygkgelrkqvlfdinleiepgeiviltGpsGsGkttlltligglrsvqeGelkvlgke.lkgasekelvqvrrkiGyifqahnllesltaeqnvrmalelkeklsakeakakaeelleavgleerldykpedlsgGqkqrvaiaralvarPklvladePtaaldkksgrevvellqklareqgttillvth 200
                 ++ + +h  g+ ++ k  l d+++ +  g   +l G+ G+Gk tl+++igg   v e +  vlg+  +++ s +++v+    +G    +  ++      q ++++  ++++ s     ++++ l++ + ++e+ +   + +s+Gq++rv i   l++  +++l de t+ ld  + +++++ l++ ++e+g++ +  th
  MMETSP1137-20121227|7645_1  42 DMPRAQHVPGTQAAYKLQLRDVSMALPRGARCMLLGANGAGKSTLMSVIGGRHLVEEESAMVLGRPaFHDTSLASRVA--LLTGNWTHTVSFVGHNVPYQAMEVSRLIASH-SVGVDPERVRRLVQLLEVDEKWNL--TTVSDGQRRRVQILCKLIKPCEVLLLDEITTDLDLLARQDLLQFLREESEERGVCTIYCTH 235
                 666778999999999999**********************************************97344444444433..3445444444444444556666666555555.555556677778888888887765..679****************************************************999999 PP

  == domain 2    score: 55.0 bits;  conditional E-value: 2.9e-17
   TIGR02982  11 ygkgelrkqvlfdinleiepgeiviltGpsGsGkttlltligglrsvqeGelkvlgke......lkgasekelvqvrrki.....GyifqahnllesltaeqnvrmalelkeklsakeakakaeelleavgleerldykpedlsgGqkqrvaiaralvarPklvladePtaaldkksgrevvellqklareqgttillvthdnr.ildvadrivkmedGkl 219
                 +g   ++   l+++++e+e g   +l G+ G+Gkttll l+gg   +  G+++vlg +      l+ ++     +  r++     G+ fqa   + ++  +    +   +++ +s++  +++ + l+e +     ++ + +++s+Gq++r  +   l    +l+l de t+ ld  s +++++ l++ +  +gtt++  th    + d    +++m++G++
  MMETSP1137-20121227|7645_1 327 WGYTGAKSAALHSVSFELERGVRCLLVGANGAGKTTLLKLLGGKHMLPRGTVDVLGYSafhdteLNTLTSLLSGDWTRQVacvgnGVPFQADFSMGFMVGSFVEAL---VRDGMSEAVVEQRKARLVELLD--LDMEWRLHKVSDGQRRRAQLFLKLLRPSQLLLLDEVTTDLDVLSRQALLQFLREESDLRGTTVVYSTHIFDgLDDWPTHLLHMKEGTV 542
                 5667788999*********************************************988766666333333333333444311111677888888888876643333...3344444444444444444444..457788899***********************************************************65415567888999998876 PP

>> TIGR03608  L_ocin_972_ABC: putative bacteriocin export ABC transporter, lactococcin 972 group
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0   1.6e-05     0.001      11      55 ..      57     101 ..      51     120 .. 0.83
   2 !   32.5   0.0     2e-10   1.2e-08     123     192 ..     164     235 ..     140     238 .. 0.87
   3 !   20.6   0.0   8.6e-07   5.3e-05      11      59 ..     334     382 ..     328     397 .. 0.86
   4 !   33.2   0.0   1.2e-10   7.4e-09     122     192 ..     450     522 ..     430     525 .. 0.85

  Alignments for each domain:
  == domain 1    score: 16.4 bits;  conditional E-value: 1.6e-05
   TIGR03608  11 keilkklslkiekGelvaivGesGsGKstlLnilgllekkdsgkv 55 
                 k  l+++s+ + +G    ++G  G+GKstl+ ++g    +++ + 
  MMETSP1137-20121227|7645_1  57 KLQLRDVSMALPRGARCMLLGANGAGKSTLMSVIGGRHLVEEESA 101
                 556899****************************98766665555 PP

  == domain 2    score: 32.5 bits;  conditional E-value: 2e-10
   TIGR03608 123 gl.ekklkkkiyelsgGekqRvalarillkeselilADEPtgsLDkknreevlellkelk.eegktiiivtH 192
                 +l e ++k ++ ++s+G++ Rv +   l+k++e++l DE t+ LD   r+ +l++l+e   e+g   i  tH
  MMETSP1137-20121227|7645_1 164 QLlEVDEKWNLTTVSDGQRRRVQILCKLIKPCEVLLLDEITTDLDLLARQDLLQFLREESeERGVCTIYCTH 235
                 444677788899********************************************9876156777888898 PP

  == domain 3    score: 20.6 bits;  conditional E-value: 8.6e-07
   TIGR03608  11 keilkklslkiekGelvaivGesGsGKstlLnilgllekkdsgkvileg 59 
                  + l+++s+++e+G    +vG  G+GK+tlL +lg      +g+v + g
  MMETSP1137-20121227|7645_1 334 SAALHSVSFELERGVRCLLVGANGAGKTTLLKLLGGKHMLPRGTVDVLG 382
                 56899******************************99998888887665 PP

  == domain 4    score: 33.2 bits;  conditional E-value: 1.2e-10
   TIGR03608 122 vgl.ekklkkkiyelsgGekqRvalarillkeselilADEPtgsLDkknreevlellkelke.egktiiivtH 192
                 v+l + +++ +++++s+G++ R  l   ll++s+l+l DE t+ LD  +r+++l++l+e  + +g+t++  tH
  MMETSP1137-20121227|7645_1 450 VELlDLDMEWRLHKVSDGQRRRAQLFLKLLRPSQLLLLDEVTTDLDVLSRQALLQFLREESDlRGTTVVYSTH 522
                 444466788899*********************************************98876589*******9 PP

>> TIGR03375  type_I_sec_LssB: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.3   0.1   3.4e-12   2.1e-10     480     660 ..      57     235 ..      51     241 .. 0.87
   2 !   66.0   0.0   7.3e-21   4.5e-19     465     691 ..     319     554 ..     314     559 .. 0.87

  Alignments for each domain:
  == domain 1    score: 37.3 bits;  conditional E-value: 3.4e-12
   TIGR03375 480 kaaLknvslkikpGekvaiiGriGsGKstllklllglyepteGsvlldgvdirqidpadlrrnigyvpqdvtLfyGtlrdNialgapaaedeellraaelaGvt.efvkkhpkGldlqigerGesLSgGQrqavalaRallkdppillLDEPtsalDnsseekllerLkelladkTl..vlvtH 660
                 k  L++vs+ +  G +  ++G +G+GKstl+ ++ g    +e s ++ g     ++ + l +++++++ + t     + +N+ ++a +++  + l a + +Gv+ e v++  + l+   + + + +S GQr+ v +   l+k  ++llLDE t+ lD  + ++ll+ L+e ++++ +  +  tH
  MMETSP1137-20121227|7645_1  57 KLQLRDVSMALPRGARCMLLGANGAGKSTLMSVIGGRHLVEEESAMVLGR--PAFHDTSLASRVALLTGNWTHTVSFVGHNVPYQAMEVS--R-LIASHSVGVDpERVRRLVQLLEVDEKWNLTTVSDGQRRRVQILCKLIKPCEVLLLDEITTDLDLLARQDLLQFLREESEERGVctIYCTH 235
                 66799******************************988887777776554..567889999**********************9988654..3.557889999857899999999988888899**********************************************99977541155566 PP

  == domain 2    score: 66.0 bits;  conditional E-value: 7.3e-21
   TIGR03375 465 eielknvsfkYpeeekaaLknvslkikpGekvaiiGriGsGKstllklllglyepteGsvlldgvdirqidpadlrrnigyvpqdvtLfyGtlrdNialgap...aaedeellraaelaGvtefvkkhpkG.....ldlqigerGesLSgGQrqavalaRallkdppillLDEPtsalDnsseekllerLkella..dkTlvlvtHrtslLe.lvdriivldkGrivadGpkdevlea 691
                 +i+++++s+ Y ++++aaL++vs++++ G +  ++G +G+GK+tllkll g     +G+v  d + ++ ++ ++l    ++++ d t   + + + + ++a     +   + ++a+ + G++e v ++ k      ldl ++ r +++S GQr+   l   ll+  ++llLDE t+ lD  s + ll+ L+e +   ++T+v +tH    L+   ++++ +++G++   Gp +   +a
  MMETSP1137-20121227|7645_1 319 AIAVHDLSWGYTGAKSAALHSVSFELERGVRCLLVGANGAGKTTLLKLLGGKHMLPRGTV--DVLGYSAFHDTELNTLTSLLSGDWTRQVACVGNGVPFQADfsmGFMVGSFVEALVRDGMSEAVVEQRKArlvelLDLDMEWRLHKVSDGQRRRAQLFLKLLRPSQLLLLDEVTTDLDVLSRQALLQFLREESDlrGTTVVYSTHIFDGLDdWPTHLLHMKEGTVAYVGPLQLARKA 554
                 588999****************************************************97..5566788999**********************9999999832234456679999999999887666554344448999999************************************************99877799*******99888527789999999999999998765555 PP

>> TIGR03873  F420-0_ABC_ATP: proposed F420-0 ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.8   0.2   2.7e-17   1.7e-15      10     217 ..      53     257 ..      45     268 .. 0.82
   2 !   51.4   0.5   2.9e-16   1.8e-14      16     221 ..     336     548 ..     320     560 .. 0.86

  Alignments for each domain:
  == domain 1    score: 54.8 bits;  conditional E-value: 2.7e-17
   TIGR03873  10 raggrlivddvdvtaPaGaltgllGPnGsGkstllrllaGllapdaGevdlagadlkalsrrararrvalveqdsdaevplsvrdvvalGriPhrslfaadsdedaevvdralarvelssladrdlstlsGGerqrvhlaralaqePklllldePtnhldvsaqlellalvrela.aegvtvvvalhdlnlaasvcdhvvvldgGrvva 217
                 +a  +l + dv +  P Ga   llG nG+Gkstl++++ G    ++ +  + g    a++  + a rval+  + +  v++  ++v        r + + +   d e v+r++   e+++  + +l+t+s G+r+rv++   l +  ++lllde t  ld+ a+ +ll+++re + + gv ++   h ++       h+  l+gG +v 
  MMETSP1137-20121227|7645_1  53 QAAYKLQLRDVSMALPRGARCMLLGANGAGKSTLMSVIGGRHLVEEESAMVLGR--PAFHDTSLASRVALLTGNWTHTVSFVGHNVPYQAMEVSRLIASHSVGVDPERVRRLVQLLEVDE--KWNLTTVSDGQRRRVQILCKLIKPCEVLLLDEITTDLDLLARQDLLQFLREESeERGVCTIYCTHIFDGLDGWPTHIAYLSGGEMVF 257
                 556677789*******************************87766655555454..35566678999****9999999988777765555555554555555679999999999999887..6789**********************************************9983457899999999988888889999999888875 PP

  == domain 2    score: 51.4 bits;  conditional E-value: 2.9e-16
   TIGR03873  16 ivddvdvtaPaGaltgllGPnGsGkstllrllaGllapdaGevdlagad.........lkalsrrararrvalveqdsdaevplsvrdvvalGriPhrslfaadsdedaevvdralarvelssla.drdlstlsGGerqrvhlaralaqePklllldePtnhldvsaqlellalvrelaa.egvtvvvalhdlnlaasvcdhvvvldgGrvvaaGpp 221
                  +  v  +   G    l+G nG+Gk+tll+ll G     +G+vd+ g           l++l     +r+va v   +  ++++s+  +v  G   +  ++  d  ++a v +r    vel +l  +  l+ +s G+r+r +l   l +  +llllde t  ldv ++ +ll+++re ++  g+tvv + h ++       h++ +++G v+  Gp 
  MMETSP1137-20121227|7645_1 336 ALHSVSFELERGVRCLLVGANGAGKTTLLKLLGGKHMLPRGTVDVLGYSafhdtelntLTSLLSGDWTRQVACVGNGVPFQADFSMGFMV--G--SFVEALVRDGMSEAVVEQRKARLVELLDLDmEWRLHKVSDGQRRRAQLFLKLLRPSQLLLLDEVTTDLDVLSRQALLQFLREESDlRGTTVVYSTHIFDGLDDWPTHLLHMKEGTVAYVGPL 548
                 56677888888888999**************************8877766777887777778888999******9999999888876555..4..6899999999888888888888899999962568999*********************************************9973568888899999999999999999999999999985 PP

>> TIGR03740  galliderm_ABC: lantibiotic protection ABC transporter, ATP-binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.8   0.0   6.8e-17   4.2e-15      15     214 ..      59     267 ..      51     274 .. 0.79
   2 !   18.8   0.0   3.6e-06   0.00022      12      57 ..     333     378 ..     320     401 .. 0.76
   3 !   24.8   0.0   5.1e-08   3.1e-06     102     205 ..     443     545 ..     429     555 .. 0.83

  Alignments for each domain:
  == domain 1    score: 53.8 bits;  conditional E-value: 6.8e-17
   TIGR03740  15 vvnnvslkvkknsvygllGpnGaGkstllklltG..llrktsGeil....ldgrewtrkdlkkiGsliesPalyenltarenlkvrtll....lglpesrieevlkivdlentekkkakqfslGmkqrlGiaiallnkPkllildePtnGldPlGiqelreliks.fpekGitvilsshilsevelladhiGiiseGklkyekkidkdedl 214
                  + +vs+++++ +   llG nGaGkstl+ ++ G  l++++s  +l    +++ +++ +     G   ++ +  ++   ++ ++v  l+     g++ +r+  ++++  le +ek + +  s G ++r+ i   l++  ++l+lde t  ld l  q+l ++++   +e+G+  i  +hi+  ++    hi  +s G++ + k i+   dl
  MMETSP1137-20121227|7645_1  59 QLRDVSMALPRGARCMLLGANGAGKSTLMSVIGGrhLVEEESAMVLgrpaFHDTSLASRVALLTGNWTHTVSFVGHNVPYQAMEVSRLIashsVGVDPERVRRLVQL--LEVDEKWNLTTVSDGQRRRVQILCKLIKPCEVLLLDEITTDLDLLARQDLLQFLREeSEERGVCTIYCTHIFDGLDGWPTHIAYLSGGEMVFCKPIEMAVDL 267
                 5789*****************************96566666644422222555555444444567777788888888888888876555111155666666666655..4567888999****************************************99997626789*****************************999988877776 PP

  == domain 2    score: 18.8 bits;  conditional E-value: 3.6e-06
   TIGR03740  12 kqavvnnvslkvkknsvygllGpnGaGkstllklltGllrktsGei 57 
                 k a++++vs+++++     l+G nGaGk+tllkll G      G +
  MMETSP1137-20121227|7645_1 333 KSAALHSVSFELERGVRCLLVGANGAGKTTLLKLLGGKHMLPRGTV 378
                 6678999*******999999***************99766666655 PP

  == domain 3    score: 24.8 bits;  conditional E-value: 5.1e-08
   TIGR03740 102 esrieevlkivdlentekkkakqfslGmkqrlGiaiallnkPkllildePtnGldPlGiqelreliksf.pekGitvilsshilsevelladhiGiiseGklkye 205
                 e+r   +++++dl+     + ++ s G ++r  + + ll+  +ll+lde t  ld l  q l ++++     +G+tv+ s+hi+  ++    h+  ++eG++ y 
  MMETSP1137-20121227|7645_1 443 EQRKARLVELLDLDM--EWRLHKVSDGQRRRAQLFLKLLRPSQLLLLDEVTTDLDVLSRQALLQFLREEsDLRGTTVVYSTHIFDGLDDWPTHLLHMKEGTVAYV 545
                 555555555555554..456788999************************************99998651569****************9999999999999986 PP

>> TIGR02315  ABC_phnC: phosphonate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0   1.3e-05   0.00079      15      55 ..      57      99 ..      47     116 .. 0.81
   2 !   27.6   0.0   5.9e-09   3.7e-07     143     230 ..     174     261 ..     149     268 .. 0.90
   3 !   23.5   0.0   1.1e-07   6.7e-06       2      60 ..     320     379 ..     319     397 .. 0.83
   4 !   27.8   0.0   5.2e-09   3.2e-07     139     230 ..     457     548 ..     425     562 .. 0.89

  Alignments for each domain:
  == domain 1    score: 16.7 bits;  conditional E-value: 1.3e-05
   TIGR02315 15 kqalknvnleikkGelvaviGlsGaGkstllrsinr..lveis 55
                k  l++v++++ +G    ++G  GaGkstl+  i +  lve++
  MMETSP1137-20121227|7645_1 57 KLQLRDVSMALPRGARCMLLGANGAGKSTLMSVIGGrhLVEEE 99
                4679***************************999641155544 PP

  == domain 2    score: 27.6 bits;  conditional E-value: 5.9e-09
   TIGR02315 143 adqLsGGqqqRvaiaRalaqqpklilaDEPiasLDpksskqvmdllkrinkekgitvivnlHqvdlakkyadrivglkageivfdgas 230
                   ++s Gq+ Rv i   l++  +++l DE ++ LD  + + +++ l++ ++e+g+ +i   H  d    + ++i  l  ge+vf ++ 
  MMETSP1137-20121227|7645_1 174 LTTVSDGQRRRVQILCKLIKPCEVLLLDEITTDLDLLARQDLLQFLREESEERGVCTIYCTHIFDGLDGWPTHIAYLSGGEMVFCKPI 261
                 5689********************************************************************************8765 PP

  == domain 3    score: 23.5 bits;  conditional E-value: 1.1e-07
   TIGR02315   2 levenlskvypngk.qalknvnleikkGelvaviGlsGaGkstllrsinrlveissgsil 60 
                 + v++ls  y+++k +al+ v++e+++G    ++G  GaGk+tll+ + + +   +g++ 
  MMETSP1137-20121227|7645_1 320 IAVHDLSWGYTGAKsAALHSVSFELERGVRCLLVGANGAGKTTLLKLLGGKHMLPRGTVD 379
                 77999999998765268*****************************99876666666655 PP

  == domain 4    score: 27.8 bits;  conditional E-value: 5.2e-09
   TIGR02315 139 aakradqLsGGqqqRvaiaRalaqqpklilaDEPiasLDpksskqvmdllkrinkekgitvivnlHqvdlakkyadrivglkageivfdgas 230
                  + r  ++s Gq+ R  +   l++ ++l+l DE ++ LD  s + +++ l++ +  +g tv+ + H  d    + ++++ +k+g++ + g+ 
  MMETSP1137-20121227|7645_1 457 MEWRLHKVSDGQRRRAQLFLKLLRPSQLLLLDEVTTDLDVLSRQALLQFLREESDLRGTTVVYSTHIFDGLDDWPTHLLHMKEGTVAYVGPL 548
                 456999**********************************************************************************9865 PP

>> TIGR00960  3a0501s02: type II secretory pathway family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.5   0.0   4.1e-13   2.6e-11      12     214 ..      53     253 ..      45     255 .. 0.82
   2 !   54.0   0.1   6.4e-17     4e-15       2     215 ..     320     541 ..     319     542 .. 0.85

  Alignments for each domain:
  == domain 1    score: 41.5 bits;  conditional E-value: 4.1e-13
   TIGR00960  12 kgaaelaldnvtvkiekGelvflvGhsGaGkstllklilgiekpsaGkirvsgqdltklr..drevpflrrqiGivfqdfkllsdrtvydnvalalriiGvkgreieervsaalekvGlkdkakalPvqlsgGeqqrvaiaravvnkPallladePtgnlddelsrdilell.eevnraGttvlvathdenlveskrkrvltlskG 214
                 ++a +l l +v++ +++G    l G  GaGkstl+ +i g++   +   +v g +  +      +v++l    G       ++ ++  y+ + ++  i+  +    +erv+  ++ + + +k +   +++s G+++rv+i   +++  ++ll de t++ld    +d+l++l ee +++G+  +  th  + ++  + ++  ls G
  MMETSP1137-20121227|7645_1  53 QAAYKLQLRDVSMALPRGARCMLLGANGAGKSTLMSVIGGRHLVEEESAMVLGRPAFHDTslASRVALLT---GNWTHTVSFVGHNVPYQAMEVSRLIASHSVGVDPERVRRLVQLLEVDEKWN--LTTVSDGQRRRVQILCKLIKPCEVLLLDEITTDLDLLARQDLLQFLrEESEERGVCTIYCTHIFDGLDGWPTHIAYLSGG 253
                 5677889************************************999999999887644331134566664...556666677777777888888888888887788888888888877776655..5789****************************************98356789**********988888777777777766 PP

  == domain 2    score: 54.0 bits;  conditional E-value: 6.4e-17
   TIGR00960   2 ikfeqvskaykgaaelaldnvtvkiekGelvflvGhsGaGkstllklilgiekpsaGkirvsg......qdltklrdrevpflrrqiGivfqdfkllsdrt...vydnvalalriiGvkgreieervsaalekvGlkdkakalPvqlsgGeqqrvaiaravvnkPallladePtgnlddelsrdilell.eevnraGttvlvathdenlveskrkrvltlskGk 215
                 i ++++s  y+ga+  al+ v++++e+G    lvG  GaGk+tllkl+ g +   +G + v g       +l++l     +   rq+ +v     +  d +   ++   + al   G++   +e+r    +e + l    +    ++s G+++r ++   +++  +lll de t++ld    + +l++l ee + +Gttv+ +th  + +++ + ++l++++G 
  MMETSP1137-20121227|7645_1 320 IAVHDLSWGYTGAKSAALHSVSFELERGVRCLLVGANGAGKTTLLKLLGGKHMLPRGTVDVLGysafhdTELNTLTSLLSGDWTRQVACVGNGVPFQADFSmgfMVGSFVEALVRDGMSEAVVEQRKARLVELLDLDMEWR--LHKVSDGQRRRAQLFLKLLRPSQLLLLDEVTTDLDVLSRQALLQFLrEESDLRGTTVVYSTHIFDGLDDWPTHLLHMKEGT 541
                 567788999************************************************9976551111115688888888888999**999887777766551114666777899999999999999999888888865443..4789********************************9999999988356889*********************99999996 PP

>> TIGR00968  3a0106s01: sulfate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.0   0.0   5.7e-17   3.5e-15      15     205 ..      59     251 ..      52     273 .. 0.84
   2 !   17.4   0.0   8.2e-06   0.00051      12      63 ..     333     384 ..     320     396 .. 0.84
   3 !   24.0   0.3   8.5e-08   5.3e-06     107     213 ..     442     546 ..     420     557 .. 0.85

  Alignments for each domain:
  == domain 1    score: 54.0 bits;  conditional E-value: 5.7e-17
   TIGR00968  15 alddvdlevktGslvallGpsGsGkstllrviaGlekpdsGrilleGrdvtrvkvrdreiGfvfqhyalfkhltvrdniaf.Gleirk.kdkakikakveellelvqleklgdryp.sqlsGGqrqrvalaralavepqvllldepfgaldakvrkelrawlrklhdevkvttvfvthdqeealevadrivvle 205
                  l dv++ ++ G    llG  G+Gkstl+ vi G +  ++   ++ Gr + + +    ++ ++  +++      v +n+ +  +e+ + + +  +    e++ +lvql ++++++  + +s Gqr+rv +   l    +vlllde  + ld   r++l ++lr+  +e  v t++ th  +       +i+ l+
  MMETSP1137-20121227|7645_1  59 QLRDVSMALPRGARCMLLGANGAGKSTLMSVIGGRHLVEEESAMVLGRPAFHDTSLASRVALLTGNWTHTV-SFVGHNVPYqAMEVSRlIASHSVGVDPERVRRLVQLLEVDEKWNlTTVSDGQRRRVQILCKLIKPCEVLLLDEITTDLDLLARQDLLQFLREESEERGVCTIYCTHIFDGLDGWPTHIAYLS 251
                 5899**********************************9999********999999999999988887544.457888887357887624555666677788888888889888863789**************9999****************************************7766555555555555 PP

  == domain 2    score: 17.4 bits;  conditional E-value: 8.2e-06
   TIGR00968  12 dfqalddvdlevktGslvallGpsGsGkstllrviaGlekpdsGrilleGrd 63 
                 +  al++v++e++ G    l+G  G+Gk+tll+++ G +    G++ + G  
  MMETSP1137-20121227|7645_1 333 KSAALHSVSFELERGVRCLLVGANGAGKTTLLKLLGGKHMLPRGTVDVLGYS 384
                 4579*********************************999999988877765 PP

  == domain 3    score: 24.0 bits;  conditional E-value: 8.5e-08
   TIGR00968 107 ikakveellelvqleklgdrypsqlsGGqrqrvalaralavepqvllldepfgaldakvrkelrawlrklhdevkvttvfvthdqeealevadrivvlekGkieqvg 213
                 + ++  +l+el++l+   +    ++s Gqr+r  l   l    q+lllde  + ld   r+ l ++lr+  d    t v+ th  +   +   ++  +++G +  vg
  MMETSP1137-20121227|7645_1 442 VEQRKARLVELLDLDM--EWRLHKVSDGQRRRAQLFLKLLRPSQLLLLDEVTTDLDVLSRQALLQFLREESDLRGTTVVYSTHIFDGLDDWPTHLLHMKEGTVAYVG 546
                 4555556666666643..2334789***************99***************************9999999999*****99999999999999999998887 PP

>> TIGR03522  GldA_ABC_ATP: gliding motility-associated ABC transporter ATP-binding subunit GldA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.8   0.0     6e-13   3.7e-11      17     211 ..      59     256 ..      48     270 .. 0.77
   2 !   48.4   0.0     3e-15   1.8e-13       3     200 ..     320     532 ..     319     554 .. 0.79

  Alignments for each domain:
  == domain 1    score: 40.8 bits;  conditional E-value: 6e-13
   TIGR03522  17 aldevsfeaekGeivGflGPnGaGkstlmkiltgylkadsGsvavagedvlknslevrkn...iGy......lPehnPlyldlyvreylefsaalyklkgrklkkrveelielvGlkaeqhkkigalskGyrqrvGlakallhdPkvlildePttGldPnqlveirevikeiakdktv..ilsthimqevealcdrviiinkGkiv 211
                  l +vs++  +G    +lG nGaGkstlm ++ g    +  s++v g  + +++  ++++    G       +  hn  y  + v   ++ +    +++     +rv++l++l  l++++   ++ +s G r+rv +   l+   +vl+lde tt ld     ++ + ++e ++++ v  i+ thi   ++    ++  +  G++v
  MMETSP1137-20121227|7645_1  59 QLRDVSMALPRGARCMLLGANGAGKSTLMSVIGGRHLVEEESAMVLGRPAFHDTSLASRVallTGNwthtvsFVGHNVPYQAMEVSRLIASH--SVGVD----PERVRRLVQL--LEVDEKWNLTTVSDGQRRRVQILCKLIKPCEVLLLDEITTDLDLLARQDLLQFLREESEERGVctIYCTHIFDGLDGWPTHIAYLSGGEMV 256
                 4779999***************************999999********99998766555311133311111134578778888777665433..33555....89******98..67778889***********************************888888888888888877654478999988777766666666666665 PP

  == domain 2    score: 48.4 bits;  conditional E-value: 3e-15
   TIGR03522   3 vevsdlsklyg..kqkaldevsfeaekGeivGflGPnGaGkstlmkiltgylkadsGsvavagedvlknsl..........evrkniGylPehnPlyldlyvreyl.efsaaly..klkgrklkkrveelielvGlkaeqhkkigalskGyrqrvGlakallhdPkvlildePttGldPnqlveirevikeia..kdktvilsthimqevealcd 200
                 + v+dls  y+  k  al +vsfe e+G    ++G nGaGk+tl+k+l g      G+v v g+++ +++           +  +++  + +  P+  d+ +   +  f  al   ++++ ++++r ++l+el  l  e   ++ ++s G r+r+ l   ll   ++l+lde tt ld     ++ + ++e +  +  tv++sthi   ++    
  MMETSP1137-20121227|7645_1 320 IAVHDLSWGYTgaKSAALHSVSFELERGVRCLLVGANGAGKTTLLKLLGGKHMLPRGTVDVLGYSAFHDTElntltsllsgDWTRQVACVGNGVPFQADFSMGFMVgSFVEALVrdGMSEAVVEQRKARLVELLDLDMEW--RLHKVSDGQRRRAQLFLKLLRPSQLLLLDEVTTDLDVLSRQALLQFLREESdlRGTTVVYSTHIFDGLDDWPT 532
                 78999999997335679*********************************999999*******999877531111111222456888888899999988766544335665553238****************9999985..799*********************************877777777777655225689*******987766555 PP

>> TIGR02769  nickel_nikE: nickel import ATP-binding protein NikE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.0   1.2e-05   0.00074      22      59 ..      55      92 ..      45     107 .. 0.87
   2 !   22.8   0.0   1.8e-07   1.1e-05     145     230 ..     171     256 ..     147     267 .. 0.84
   3 !   51.3   0.0   3.9e-16   2.4e-14      22     229 ..     332     542 ..     320     555 .. 0.88

  Alignments for each domain:
  == domain 1    score: 16.9 bits;  conditional E-value: 1.2e-05
   TIGR02769 22 qrkavldnvslsleeGetvallGrsGaGkstlarlllG 59
                ++k  l +vs++l +G    llG  GaGkstl  ++ G
  MMETSP1137-20121227|7645_1 55 AYKLQLRDVSMALPRGARCMLLGANGAGKSTLMSVIGG 92
                5566799*************************999866 PP

  == domain 2    score: 22.8 bits;  conditional E-value: 1.8e-07
   TIGR02769 145 dklPrqlsGGqlqriniaralavePklivldeavsnldlvlqasilellkklkqefGlaylfithdlrlvqkfaqrvlvldeGqiv 230
                 +   + +s Gq +r+ i   l    ++++lde  ++ldl+ +  +l+ l++  +e G++ ++ th +   +    +++ l +G++v
  MMETSP1137-20121227|7645_1 171 KWNLTTVSDGQRRRVQILCKLIKPCEVLLLDEITTDLDLLARQDLLQFLREESEERGVCTIYCTHIFDGLDGWPTHIAYLSGGEMV 256
                 3445689**************99999***************************************998888888888888888877 PP

  == domain 3    score: 51.3 bits;  conditional E-value: 3.9e-16
   TIGR02769  22 qrkavldnvslsleeGetvallGrsGaGkstlarlllGlekPakGev......sfrGqdlakldrkqrkafrrdvqlvfqdsisavnprksvreiigePlrhlts..ldeserkariaellelvelrsevldklPrqlsGGqlqriniaralavePklivldeavsnldlvlqasilellkklkqefGlaylfithdlrlvqkfaqrvlvldeGqi 229
                 ++ a l+ vs++le+G    l+G  GaGk+tl +ll G     +G+v       f+  +l  l +       r+v  v    +  + +  s++ ++g  ++ l +  ++e+  ++r a+l+el++l+ e    + +++s Gq +r+ +   l    +l++lde  ++ld++ + ++l+ l++  +  G+++++ th +   +    ++l ++eG +
  MMETSP1137-20121227|7645_1 332 AKSAALHSVSFELERGVRCLLVGANGAGKTTLLKLLGGKHMLPRGTVdvlgysAFHDTELNTLTSLLSGDWTRQVACVGNGVP--FQADFSMGFMVGSFVEALVRdgMSEAVVEQRKARLVELLDLDME---WRLHKVSDGQRRRAQLFLKLLRPSQLLLLDEVTTDLDVLSRQALLQFLREESDLRGTTVVYSTHIFDGLDDWPTHLLHMKEGTV 542
                 67789*********************************999999999333333466678889999999999999999987665..8889999999999999987555999999*****99999999755...56789***************9999****************************************99999999999999999976 PP

>> TIGR02324  CP_lyasePhnL: phosphonate C-P lyase system protein PhnL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.7   0.0   1.1e-15   6.5e-14      23     207 ..      59     235 ..      47     238 .. 0.83
   2 !   17.5   0.0   7.7e-06   0.00048      18      65 ..     331     378 ..     323     397 .. 0.86
   3 !   22.0   0.0   3.1e-07   1.9e-05     112     207 ..     429     522 ..     423     528 .. 0.90

  Alignments for each domain:
  == domain 1    score: 49.7 bits;  conditional E-value: 1.1e-15
   TIGR02324  23 vlkevsleveaGelvalsGksGaGkstllkslyanYlpesgrilvrhegeivdlvkaserevlevR.rktigyvsqfLrviPRvsalevvaepl.lelGvereearakakellarlniperLWslaPatfsGGekqRvniaraliadrPiLLLdePtasLdaanrkvvvelikea.kargaaligifh 207
                  l++vs+++  G   +l G+ GaGkstl+ ++ + +l+e  + +v  + ++ d   as   +l+    +t+++v      +P   a+ev    +  + Gv+     +++++l++ l++ e+ W+l+  t s G ++Rv i   li++  +LLLde t+ Ld   r+  +++++e   +rg+  i   h
  MMETSP1137-20121227|7645_1  59 QLRDVSMALPRGARCMLLGANGAGKSTLMSVIGGRHLVEEESAMVLGRPAFHDTSLASRVALLTGNwTHTVSFVGH---NVPY-QAMEVSRLIAsHSVGVDP----ERVRRLVQLLEVDEK-WNLT--TVSDGQRRRVQILCKLIKPCEVLLLDEITTDLDLLARQDLLQFLREEsEERGVCTIYCTH 235
                 4789************************************************988888877776442678888875...5575.678876543303445555....68899*******776.***8..******************************************998761556777665555 PP

  == domain 2    score: 17.5 bits;  conditional E-value: 7.7e-06
   TIGR02324  18 GvklpvlkevsleveaGelvalsGksGaGkstllkslyanYlpesgri 65 
                 G k  +l++vs+e+e G    l G+ GaGk tllk l ++++   g++
  MMETSP1137-20121227|7645_1 331 GAKSAALHSVSFELERGVRCLLVGANGAGKTTLLKLLGGKHMLPRGTV 378
                 788899*****************************9987766655555 PP

  == domain 3    score: 22.0 bits;  conditional E-value: 3.1e-07
   TIGR02324 112 aepllelGvereearakakellarlniperLWslaPatfsGGekqRvniaraliadrPiLLLdePtasLdaanrkvvvelikeak.argaaligifh 207
                  e+l++ G++++  +++ ++l++ l++ +  W l     s G ++R  +   l+ +  +LLLde t+ Ld   r++ +++++e    rg++++   h
  MMETSP1137-20121227|7645_1 429 VEALVRDGMSEAVVEQRKARLVELLDL-DMEWRLH--KVSDGQRRRAQLFLKLLRPSQLLLLDEVTTDLDVLSRQALLQFLREESdLRGTTVVYSTH 522
                 588999*********************.889***9..89****************************************998765157888775555 PP

>> TIGR02211  LolD_lipo_ex: lipoprotein releasing system, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.7   0.0   1.3e-12   7.9e-11      21     200 ..      60     235 ..      51     241 .. 0.92
   2 !   46.9   0.3   8.1e-15     5e-13      17     219 ..     333     542 ..     324     544 .. 0.79

  Alignments for each domain:
  == domain 1    score: 39.7 bits;  conditional E-value: 1.3e-12
   TIGR02211  21 lkgvsleiekgelvaivGssGsGkstllhllggldkptsGevllkGk.elsklssneraklrnkklGfiyqfhhlladftalenvamPlliskkskkeakerakellekvglekrinkkpselsGGerqrvaiaralvnkPklvladePtgnldkktakkifelllelnkekntallvvth 200
                 l++vs+ + +g    ++G+ G+Gkstl+ ++gg     + + ++ G+  ++  s ++r +l   +      f      ++a+e   +  li+++s+    er  +l++ ++++++ n   + +s G+r+rv i   l++  +++l de t++ld  + + ++++l+e  +e++++ +  th
  MMETSP1137-20121227|7645_1  60 LRDVSMALPRGARCMLLGANGAGKSTLMSVIGGRHLVEEESAMVLGRpAFHDTSLASRVALLTGNWTHTVSFVGHNVPYQAME---VSRLIASHSVGVDPERVRRLVQLLEVDEKWNL--TTVSDGQRRRVQILCKLIKPCEVLLLDEITTDLDLLARQDLLQFLREESEERGVCTIYCTH 235
                 789************************************99999999458999999999999999888888876667788887...679*************************9986..579***************************************************9999999 PP

  == domain 2    score: 46.9 bits;  conditional E-value: 8.1e-15
   TIGR02211  17 eievlkgvsleiekgelvaivGssGsGkstllhllggldkptsGevllkGke.lsklssnerakl....rnkklGfiyqfhhlladftalenv..amPllis.kkskkeakerakellekvglekrinkkpselsGGerqrvaiaralvnkPklvladePtgnldkktakkifelllelnkekntallvvthdle.lakkldrvlelkdgkl 219
                 +   l+ vs+e+e+g    +vG+ G+Gk+tll llgg  +   G+v + G + ++    n  ++l      +++  +     + adf++   v   + +l++  +s++  ++r ++l+e ++l+  ++ +  ++s G+r+r+ +   l+   +l+l de t++ld  + ++++++l+e    ++t+++  th  + l +   ++l++k+g++
  MMETSP1137-20121227|7645_1 333 KSAALHSVSFELERGVRCLLVGANGAGKTTLLKLLGGKHMLPRGTVDVLGYSaFHDTELNTLTSLlsgdWTRQVACVGNGVPFQADFSMGFMVgsFVEALVRdGMSEAVVEQRKARLVELLDLD--MEWRLHKVSDGQRRRAQLFLKLLRPSQLLLLDEVTTDLDVLSRQALLQFLREESDLRGTTVVYSTHIFDgLDDWPTHLLHMKEGTV 542
                 56789*****************************************999954244444444444411112456667777777778887644442145666651567777888889999988887..6788899***********************************************************75416666677889999876 PP

>> TIGR02203  MsbA_lipidA: lipid A export permease/ATP-binding protein MsbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.0   0.0     5e-12   3.1e-10     348     509 ..      59     215 ..      48     235 .. 0.85
   2 !   49.3   0.0   9.5e-16   5.9e-14     331     525 ..     319     518 ..     282     527 .. 0.77

  Alignments for each domain:
  == domain 1    score: 37.0 bits;  conditional E-value: 5e-12
   TIGR02203 348 aldsislkveaGevvalvGrsGsGkstlvnllp.RFyepdsGeillDgvdladlkLasLRrqvalvsqdvvLFddtiaenvaYgeleevdeaeveealaaaylkdlvdklpeGldtevGengskLsGGqRqRlaiaRallkdaPiLiLDeatsaLDneseRlv 509
                  l+++s+ +  G +  l G  G+Gkstl++++  R +  ++  ++l   + +d +La   ++val + + +     + +nv Y ++ ev+  ++ +  +     + v +l + l+ +   n + +s GqR R+ i   l+k   +L+LDe t+ LD  +   +
  MMETSP1137-20121227|7645_1  59 QLRDVSMALPRGARCMLLGANGAGKSTLMSVIGgRHLVEEESAMVLGRPAFHDTSLA---SRVALLTGNWTHTVSFVGHNVPYQAM-EVS--RLIASHSVGVDPERVRRLVQLLEVDEKWNLTTVSDGQRRRVQILCKLIKPCEVLLLDEITTDLDLLARQDL 215
                 5899****************************5499999999999999999998776...69*******9999999********99.444..4455555566678899999999999999***********************************97665555 PP

  == domain 2    score: 49.3 bits;  conditional E-value: 9.5e-16
   TIGR02203 331 kvefrnvtfrypgddrealdsislkveaGevvalvGrsGsGkstlvnllpRFyepdsGei.llDgvdladlkLasLRrqva.lvsqdvvLFddtiaenvaYgel...eevdeaeveealaaaylkdlvdklpeGldtevGengskLsGGqRqRlaiaRallkdaPiLiLDeatsaLDneseRlvqaaLerlmkgRttlvi 525
                  + +++++  y g++ +al+s+s+++e G +  lvG  G+Gk+tl++ll       +G + +l   + +d +L++L + ++   + +v    + +     ++      +  ea v++ +++a +++   +l e ld ++  +  k+s GqR R  +   ll+ + +L+LDe t+ LD  s  ++ + L +  + R t v+
  MMETSP1137-20121227|7645_1 319 AIAVHDLSWGYTGAKSAALHSVSFELERGVRCLLVGANGAGKTTLLKLLGGKHMLPRGTVdVLGYSAFHDTELNTLTSLLSgDWTRQVACVGNGVPFQADFSMGfmvGSFVEALVRDGMSEAVVEQRKARLVELLDLDMEWRLHKVSDGQRRRAQLFLKLLRPSQLLLLDEVTTDLDVLSRQALLQFLREESDLRGTTVV 518
                 688999*****************************************9986666666666366667888888888876655224555555555554433333322235567777777777777777777777788888888889**********************************9998888888776666655554 PP

>> TIGR01277  thiQ: thiamine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.3   0.1   8.9e-13   5.5e-11      16     207 ..      62     255 ..      52     260 .. 0.80
   2 !   43.0   0.3   1.4e-13   8.4e-12      17     210 ..     340     545 ..     322     547 .. 0.85

  Alignments for each domain:
  == domain 1    score: 40.3 bits;  conditional E-value: 8.9e-13
   TIGR01277  16 efdlsveaGervailGesGaGkstllnliaGflepasGeikvndkdhtrsapyerpvsmlfqennlfahltvrqniglGlkpglklna.....vqkekvedvarqvGiadylerlpeelsGGqrqrvalarclvrekpillldepfsaldpklreemlalvkkladekkltlllvthslsdaaaiasqvvvvedGki 207
                   ++++ +G r  +lG  GaGkstl+++i G     + + +v ++   + +     v++l   n   +   v +n+        +l a     v+ e+v+ + + + +++  +     +s Gqr+rv +   l+++  +lllde  + ld + r+++l ++++ ++e+ +  +  th  + + +  +++++++ G++
  MMETSP1137-20121227|7645_1  62 DVSMALPRGARCMLLGANGAGKSTLMSVIGGRHLVEEESAMVLGRPAFHDTSLASRVALLTG-NWTHTVSFVGHNVPYQAMEVSRLIAshsvgVDPERVRRLVQLLEVDEKWNL--TTVSDGQRRRVQILCKLIKPCEVLLLDEITTDLDLLARQDLLQFLREESEERGVCTIYCTHIFDGLDGWPTHIAYLSGGEM 255
                 56788899***********************9888888888888877777777777877754.444444556677766655555555511111566777777777777776653..689****************************************************************99999999999976 PP

  == domain 2    score: 43.0 bits;  conditional E-value: 1.4e-13
   TIGR01277  17 fdlsveaGervailGesGaGkstllnliaGflepasGeikvndkdhtrsapyerpvsmlf.....qennlfahltvrqniglGlkpglklnavqkekvedv......arqvGiady.lerlpeelsGGqrqrvalarclvrekpillldepfsaldpklreemlalvkkladekkltlllvthslsdaaaiasqvvvvedGkikvl 210
                  ++++e+G r  ++G  GaGk+tll+l+ G  +  +G++ v + +  + +  +   s+l      q   + + +  + + ++G+  g  ++a+ ++ + ++      ar v + d+ +e   +++s Gqr+r  l   l+r+  +lllde  + ld + r+ +l ++++ +d +  t++  th  + +    ++ + +++G ++++
  MMETSP1137-20121227|7645_1 340 VSFELERGVRCLLVGANGAGKTTLLKLLGGKHMLPRGTVDVLGYSAFHDTELNTLTSLLSgdwtrQVACVGNGVPFQADFSMGFMVGSFVEALVRDGMSEAvveqrkARLVELLDLdMEWRLHKVSDGQRRRAQLFLKLLRPSQLLLLDEVTTDLDVLSRQALLQFLREESDLRGTTVVYSTHIFDGLDDWPTHLLHMKEGTVAYV 545
                 4667899**************************99**********999999999999996222224455666788899**************999988765222222444555554456556899*****************************************************************9999999999999876 PP

>> TIGR00955  3a01204: pigment precursor permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0   7.4e-06   0.00046      32      76 ..      51      95 ..      24     120 .. 0.82
   2 !   24.6   0.0   3.1e-08   1.9e-06     164     258 ..     174     268 ..     160     272 .. 0.88
   3 !   42.1   0.2   1.5e-13   9.4e-12      37     253 ..     333     550 ..     319     559 .. 0.82

  Alignments for each domain:
  == domain 1    score: 16.7 bits;  conditional E-value: 7.4e-06
   TIGR00955 32 arkkpekellknvsGvaksGellAvlGsSGaGKtTLlnalafrse 76
                  ++ +k  l++vs ++  G    +lG+ GaGK+TL++++  r+ 
  MMETSP1137-20121227|7645_1 51 GTQAAYKLQLRDVSMALPRGARCMLLGANGAGKSTLMSVIGGRHL 95
                4556789999******************************99875 PP

  == domain 2    score: 24.6 bits;  conditional E-value: 3.1e-08
   TIGR00955 164 vkglSgGerkRlalaselltdPilLfcDEPTsGLDsfsaasvvkvLkklaqkgktviltiHQPsselfelfd....kiillaeGrvvylGspeeavkff 258
                 + ++S G+r+R+ + + l++   +L++DE T+ LD    + +++ L++ ++++   ++ti     ++f+ +d    +i  l+ G +v+    e av+++
  MMETSP1137-20121227|7645_1 174 LTTVSDGQRRRVQILCKLIKPCEVLLLDEITTDLDLLARQDLLQFLREESEERG--VCTIY--CTHIFDGLDgwptHIAYLSGGEMVFCKPIEMAVDLL 268
                 5679********************************************999998..89998..689999886555599999999999987777777765 PP

  == domain 3    score: 42.1 bits;  conditional E-value: 1.5e-13
   TIGR00955  37 ekellknvsGvaksGellAvlGsSGaGKtTLlnalafrsekglkvsgdvllnGek.veakemraisayvqqddlfiptltvrehLmfsahlrlkrrl...tkk.ekrerveevleelgLrkcadtrigvpgrvkglSgGerkRlalaselltdPilLfcDEPTsGLDsfsaasvvkvLkklaq.kgktviltiHQPsselfelfd....kiillaeGrvvylGspee 253
                 ++  l++vs +++ G    ++G+ GaGKtTLl+ l  +++      g+v + G      +e++   +     d   +   v + + f+a + +   +    +   +  + e+v+e+ + r  +     ++ r++ +S G+r+R  l   ll   +lL++DE T+ LD  s + +++ L++ ++ +g+tv+ + H     +f+ +d    +++ + eG v+y G  + 
  MMETSP1137-20121227|7645_1 333 KSAALHSVSFELERGVRCLLVGANGAGKTTLLKLLGGKHM---LPRGTVDVLGYSaFHDTELNTLTSL-LSGDWTRQVACVGNGVPFQADFSMGFMVgsfVEAlVRDGMSEAVVEQRKARLVELLDLDMEWRLHKVSDGQRRRAQLFLKLLRPSQLLLLDEVTTDLDVLSRQALLQFLREESDlRGTTVVYSTH-----IFDGLDdwptHLLHMKEGTVAYVGPLQL 550
                 566799*****************************98765...4446677777651556666666665.5678999999*************98654111344589999999999999999999999999*************************************************999757888998777.....66655433339*************8765 PP

>> TIGR03719  ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.0   1.4e-06   8.4e-05     335     373 ..      57      95 ..      46     108 .. 0.75
   2 !   19.5   0.0     1e-06   6.4e-05     438     510 ..     171     247 ..     152     259 .. 0.55
   3 !   20.3   0.0     6e-07   3.7e-05     322     381 ..     319     380 ..     309     386 .. 0.83
   4 !   23.3   0.2   7.3e-08   4.5e-06     157     513 ..     459     537 ..     442     548 .. 0.54

  Alignments for each domain:
  == domain 1    score: 19.1 bits;  conditional E-value: 1.4e-06
   TIGR03719 335 klliddlsfklpkggivGviGpnGaGkstlfklitgkek 373
                 kl + d+s+ lp+g+   ++G+nGaGkstl+ +i g++ 
  MMETSP1137-20121227|7645_1  57 KLQLRDVSMALPRGARCMLLGANGAGKSTLMSVIGGRHL 95 
                 566778888888888888888888888888888877765 PP

  == domain 2    score: 19.5 bits;  conditional E-value: 1e-06
   TIGR03719 438 qkkvgelsGGernrvhlakllkeggnvllldePtndldv....etlraleeallefaGcavvishdrwfldriathi 510
                 + ++ ++s G+r rv++   l +  +vlllde t dld+    + l+ l e  +e   c++  +h    ld   thi
  MMETSP1137-20121227|7645_1 171 KWNLTTVSDGQRRRVQILCKLIKPCEVLLLDEITTDLDLlarqDLLQFLREESEERGVCTIYCTHIFDGLDGWPTHI 247
                 33445555555555555555555555555555555555422223344444444444555555555544555555554 PP

  == domain 3    score: 20.3 bits;  conditional E-value: 6e-07
   TIGR03719 322 vievenlskafg..dklliddlsfklpkggivGviGpnGaGkstlfklitgkekpdsGelki 381
                  i v++ls ++   +   ++ +sf+l +g    ++G+nGaGk+tl+kl+ gk+   +G++ +
  MMETSP1137-20121227|7645_1 319 AIAVHDLSWGYTgaKSAALHSVSFELERGVRCLLVGANGAGKTTLLKLLGGKHMLPRGTVDV 380
                 566777777775213457899********************************999999875 PP

  == domain 4    score: 23.3 bits;  conditional E-value: 7.3e-08
   TIGR03719 157 akveklsGGekrrvalcrlllekPdlllldePtnhldaesvaWlekflkeykGtvvavthdryfldnvaeWileldrGegipykgnysswleqkekrleqeekeeaarkkalkkeleWvrsspkarqakskarlaryeelaseesekkeetaeivippgerlGdkvievenlskafgdklliddlsfklpkggivGviGpnGaGkstlfklitgkekpdsGelkiGetvklayvdqsrdalddnktvweeisdGldllklgkvevnsrayvgrfnfkGadqqkkvgelsGGernrvhlakllkeggnvllldePtndldvetlraleealle...faGcavvishdrw.fldriathilaf 513
                 +                                                                                                                                                                                                                                                                                          +++++s G+r r +l   l + + +lllde t dldv   +al + l e   + G++vv s   +  ld   th+l +
  MMETSP1137-20121227|7645_1 459 W------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------RLHKVSDGQRRRAQLFLKLLRPSQLLLLDEVTTDLDVLSRQALLQFLREesdLRGTTVVYSTHIFdGLDDWPTHLLHM 537
                 4..........................................................................................................................................................................................................................................................................................445555555555555555555555555555555555555555555553211144555555433331355555555544 PP

>> TIGR01189  ccmA: heme ABC exporter, ATP-binding protein CcmA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.0   0.1   3.7e-11   2.3e-09      16     186 ..      60     236 ..      52     242 .. 0.70
   2 !   46.9   2.1   8.4e-15   5.2e-13      13     188 ..     334     525 ..     328     537 .. 0.77

  Alignments for each domain:
  == domain 1    score: 35.0 bits;  conditional E-value: 3.7e-11
   TIGR01189  16 leglsfelaaGealvveGpnGiGKttLLRilaG..LlkpesGev....elndkelaeq....rdelaeellylgHldglKaeLsalEnLkfyaallqseqktveealekvgLsgl.edlpvaqLsAGqkrRlalarLllskaplWiLDEPttalDkegvellaellaaHlargG.ivllathq 186
                 l+++s+ l  G   ++ G nG+GK+tL+ ++ G  L++ es  v    +++d++la      + ++++++ ++gH+        a+E  +  a+ +     + e     v+L ++ e+  ++++s Gq+rR+ +   l++   + +LDE tt lD  + + l + l++  ++ G  ++  th+
  MMETSP1137-20121227|7645_1  60 LRDVSMALPRGARCMLLGANGAGKSTLMSVIGGrhLVEEESAMVlgrpAFHDTSLASRvallTGNWTHTVSFVGHNVPY----QAMEVSRLIASHSVGV--DPERVRRLVQLLEVdEKWNLTTVSDGQRRRVQILCKLIKPCEVLLLDEITTDLDLLARQDLLQFLREESEERGvCTIYCTHI 236
                 678999999************************6666666554422114555544433111145666667777776543....3344434333333222..4556666666666525668899**********999999*******************8888888888776655157888886 PP

  == domain 2    score: 46.9 bits;  conditional E-value: 8.4e-15
   TIGR01189  13 rvlleglsfelaaGealvveGpnGiGKttLLRilaGLlkpesGevel......ndkelaeqr....delaeellylgHldglKaeLsalEnL.kfyaallqseqk..tvee.alekvgLsgle.dlpvaqLsAGqkrRlalarLllskaplWiLDEPttalDkegvellaellaaHla.rgGivllathqdl 188
                  + l+++sfel  G    ++G nG+GKttLL++l G      G+v++      +d+el++ +      ++++++ +g     +a+ s+   + +f +al+++      ve+     v+L +l+ +  ++++s Gq+rR  l   ll   +l +LDE tt lD+ + + l + l++  + rg +v+ +th+  
  MMETSP1137-20121227|7645_1 334 SAALHSVSFELERGVRCLLVGANGAGKTTLLKLLGGKHMLPRGTVDVlgysafHDTELNTLTsllsGDWTRQVACVGNGVPFQADFSMGFMVgSFVEALVRDGMSeaVVEQrKARLVELLDLDmEWRLHKVSDGQRRRAQLFLKLLRPSQLLLLDEVTTDLDVLSRQALLQFLREESDlRGTTVVYSTHIFD 525
                 567899**************************************986222222556666554222256889999999999999999987655368888877544332333313456888887636789**************999********************999999999888736667888999755 PP

>> TIGR02204  MsbA_rel: ABC transporter, permease/ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.1   0.0   1.3e-12   8.1e-11     353     528 ..      57     228 ..      30     238 .. 0.88
   2 !   40.7   0.0   4.2e-13   2.6e-11     337     531 ..     319     518 ..     303     523 .. 0.79

  Alignments for each domain:
  == domain 1    score: 39.1 bits;  conditional E-value: 1.3e-12
   TIGR02204 353 qkaldgldltvrpGetvalvGPsGaGkstllelll.rfydPqsGailldGvdlreldpeelrerlalvpqdsalfaasvleniryGrpdasdeeveaaakaaeadefisklpeGydtllGergvtLsGGqkqriaiarailkdapiLLLdeatsaLdaeseqlvqqaleelmkgrtt 528
                 ++ l+++++++  G +  l G  GaGkstl++++  r+ + ++ a+ l+     +++ + l +r+al + + +   + v +n+ y  ++ s+  ++a+ +     e +++l +  +     +  t+s Gq++r+ i   ++k   +LLLde t+ Ld  + q + q l e +++r  
  MMETSP1137-20121227|7645_1  57 KLQLRDVSMALPRGARCMLLGANGAGKSTLMSVIGgRHLVEEESAMVLGRP---AFHDTSLASRVALLTGNWTHTVSFVGHNVPYQAMEVSR--LIASHSVGVDPERVRRLVQLLEVDEKWNLTTVSDGQRRRVQILCKLIKPCEVLLLDEITTDLDLLARQDLLQFLREESEERGV 228
                 56799****************************963777777777777554...56677899************************999986..667777788899*******99988888899**************************************999999999988864 PP

  == domain 2    score: 40.7 bits;  conditional E-value: 4.2e-13
   TIGR02204 337 eiefeevkfayParpdqkaldgldltvrpGetvalvGPsGaGkstllelllrfydPqsGailldGvdlreldpeelrerlalvpqdsalfaasvleniry........GrpdasdeeveaaakaaeadefisklpeGydtllGergvtLsGGqkqriaiarailkdapiLLLdeatsaLdaeseqlvqqaleelmkgrttlvi 531
                 +i+++++++ y       al+ ++++++ G +  lvG  GaGk+tll+ll   +   +G++ + G    +++ +el +  +l + d +   a v + + +              ++ v++  ++a  ++   +l e  d  +  r  ++s Gq++r  +   +l+ +++LLLde t+ Ld  s q++ q l e ++ r t v+
  MMETSP1137-20121227|7645_1 319 AIAVHDLSWGYTGAK-SAALHSVSFELERGVRCLLVGANGAGKTTLLKLLGGKHMLPRGTVDVLGYS--AFHDTELNTLTSLLSGDWTRQVACVGNGVPFqadfsmgfMVGSFVEALVRDGMSEAVVEQRKARLVELLDLDMEWRLHKVSDGQRRRAQLFLKLLRPSQLLLLDEVTTDLDVLSRQALLQFLREESDLRGTTVV 518
                 578888888887765.89********************************98888888999888864..4455555555555555544444444444433111111003334567788999999999999999999999****************************************************999998876664 PP

>> TIGR02142  modC_ABC: molybdate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.9   0.1   8.5e-12   5.3e-10      15     209 ..      62     254 ..      49     272 .. 0.77
   2 !   45.7   1.2   1.7e-14   1.1e-12      16     217 ..     340     549 ..     332     557 .. 0.82

  Alignments for each domain:
  == domain 1    score: 36.9 bits;  conditional E-value: 8.5e-12
   TIGR02142  15 dvdlelpgkgvtalFGrsGsGktslirliaGLtrpdege.ivldgevlqdsr..kkiil..ppekRrvgyvFqeArLFpHlsvrenLrYGlkraraeerriseekvielLgiehLleRlpgkLsGGekqRvaigRAlLssPeLLlmDePLaaLDekrkkeilPyLerlsaelkiPilyvsHsldevarladrvvvledGr 209
                 dv++ lp   ++ l G+ G+Gk++l+ +i G    +e   +vl    ++d++   ++ l        v++v  +   +  ++v + +      +++e+      ++++lL +++    + +++s G + Rv i   l+   e+Ll+De  + LD   ++++l +L++ s+e  +  +y  H +d +     ++  l  G 
  MMETSP1137-20121227|7645_1  62 DVSMALPRGARCMLLGANGAGKSTLMSVIGGRHLVEEESaMVLGRPAFHDTSlaSRVALltGNWTHTVSFVGHNV-PYQAMEVSRLIASHSVGVDPER----VRRLVQLLEVDEK--WNLTTVSDGQRRRVQILCKLIKPCEVLLLDEITTDLDLLARQDLLQFLREESEERGVCTIYCTHIFDGLDGWPTHIAYLSGGE 254
                 7899999989*********************87766554055544455554211344440044556677776554.4677788777766666666665....6799999999985..567899**********************************************************9998877777766666665 PP

  == domain 2    score: 45.7 bits;  conditional E-value: 1.7e-14
   TIGR02142  16 vdlelpgkgvtalFGrsGsGktslirliaGLtrpdegeivldgev.lqdsrkkiilp....pekRrvgyv.....FqeArL..FpHls.vrenLrYGlkraraeerriseekvielLgiehLleRlpgkLsGGekqRvaigRAlLssPeLLlmDePLaaLDekrkkeilPyLerlsaelkiPilyvsHsldevarladrvvvledGrvkaagkle 217
                 v++el+   ++ l G+ G+Gkt+l++l+ G   + +g + + g   ++d++ +  ++       R+v+ v     Fq      F   s v   +r G+++a +e+r   +++++elL ++  +e + +k+s G + R  +   lL   +LLl+De  + LD  +++ +l +L++ s+     ++y  H +d +     +++ +++G v+  g+l+
  MMETSP1137-20121227|7645_1 340 VSFELERGVRCLLVGANGAGKTTLLKLLGGKHMLPRGTVDVLGYSaFHDTELNTLTSllsgDWTRQVACVgngvpFQADFSmgFMVGSfVEALVRDGMSEAVVEQR---KARLVELLDLD--MEWRLHKVSDGQRRRAQLFLKLLRPSQLLLLDEVTTDLDVLSRQALLQFLREESDLRGTTVVYSTHIFDGLDDWPTHLLHMKEGTVAYVGPLQ 549
                 67888876678899*************************998865155555443333111145899988755555774322123322326666789*********6...99********9..688899*********************************************************************************999986 PP

>> TIGR03796  NHLM_micro_ABC1: NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.8   0.2   1.5e-10   9.5e-09     495     670 ..      60     235 ..      51     240 .. 0.84
   2 !   45.7   0.0   9.5e-15   5.9e-13     477     689 ..     319     542 ..     310     555 .. 0.76

  Alignments for each domain:
  == domain 1    score: 31.8 bits;  conditional E-value: 1.5e-10
   TIGR03796 495 iedfslslkpGqrvAlvGgsGsGkstiaklvaGlyepwsGeilfDgkpreeiprevlanslalvdqdivlfegtvrdnltlwdetipeedlvrAakDAaihdvilarpggyeaelaegganlsGGqrqRleiARaLvknPsiLilDEatsaLDaetEkaidenlr....rRgctciivaH 670
                 ++d+s+ l  G+r  l G+ G+Gkst+  ++ G +   + + ++ g+p  +++ + la+ +al   + +   + v  n+    ++++ ++l+      +  + + ++ + +e + + + + +s Gqr R++i   L+k   +L+lDE t+ LD  + + + + lr    +Rg+ +i  +H
  MMETSP1137-20121227|7645_1  60 LRDVSMALPRGARCMLLGANGAGKSTLMSVIGGRHLVEEESAMVLGRP--AFHDTSLASRVALLTGNWTHTVSFVGHNVPY--QAMEVSRLIASHSVGVDPERVRRLVQLLEVDEKWNLTTVSDGQRRRVQILCKLIKPCEVLLLDEITTDLDLLARQDLLQFLReeseERGVCTIYCTH 235
                 6899*****************************999888888888876..5778888888888888888888888888775..56666777766666666788999999999999999999*************************************9999998333348887777776 PP

  == domain 2    score: 45.7 bits;  conditional E-value: 9.5e-15
   TIGR03796 477 kvelrnvtfgysaleapliedfslslkpGqrvAlvGgsGsGkstiaklvaGlyepwsGeilfDgkpreeiprevlanslalvdqdivlfegtvrdn........ltlwdetipeedlvrAakDAaihdvilarpggyeaelaegganlsGGqrqRleiARaLvknPsiLilDEatsaLDaetEkaidenlrr....RgctciivaHRLstiRdc.deiivlerGkv 689
                 ++ ++++++gy+  +++ ++ +s++l+ G r  lvG+ G+Gk t+ kl+ G +   +G++ + g ++  ++ + l++  +l + d +   + v +         + +   +  e+ + + + +A++++  +++ + ++ +++   + +s Gqr R ++   L +   +L+lDE+t+ LD    +a+ + lr+    Rg t++  +H    + d   +++ +++G+v
  MMETSP1137-20121227|7645_1 319 AIAVHDLSWGYTGAKSAALHSVSFELERGVRCLLVGANGAGKTTLLKLLGGKHMLPRGTVDVLGYSA--FHDTELNTLTSLLSGDWTRQVACVGNGvpfqadfsMGFMVGSFVEALVRDGMSEAVVEQRKARLVELLDLDMEWRLHKVSDGQRRRAQLFLKLLRPSQLLLLDEVTTDLDVLSRQALLQFLREesdlRGTTVVYSTHIFDGLDDWpTHLLHMKEGTV 542
                 58899*****************************************************997666543..33333433334444333333333333300000001344556777777777777888888888888888999999999******************999***********************976666999999888877777664134555666665 PP

>> TIGR01288  nodI: nodulation ABC transporter NodI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.2   0.2   1.4e-12   8.8e-11      17     199 ..      57     241 ..      50     263 .. 0.81
   2 !   36.0   1.4   1.3e-11   8.4e-10      19     206 ..     336     535 ..     318     548 .. 0.73

  Alignments for each domain:
  == domain 1    score: 39.2 bits;  conditional E-value: 1.4e-12
   TIGR01288  17 kvvvndlsftiaagecfgllgpngagkstiarlvlglispdegkitvlgepvpararlarakigvvpqfdnldreft...vrenllvfgryfglstreie.evipsllefarleskadvrvadlsggmkrrltlaralindpqllildepttgldpharhliwerlrsl.largktilltthlmeeae 199
                 k+ + d+s+++ +g    llg ngagkst+  ++ g    +e    vlg p    + la +++ +++   +    f    v  + +   r +  ++  ++ e +  l+++  ++ k   +++++s g +rr+ + + li+  ++l+lde tt ld  ar+ + + lr     rg   +  th+++  +
  MMETSP1137-20121227|7645_1  57 KLQLRDVSMALPRGARCMLLGANGAGKSTLMSVIGGRHLVEEESAMVLGRPAFHDTSLA-SRVALLTGNWTHTVSFVghnVPYQAMEVSRLIASHSVGVDpERVRRLVQLLEVDEKW--NLTTVSDGQRRRVQILCKLIKPCEVLLLDEITTDLDLLARQDLLQFLREEsEERGVCTIYCTHIFDGLD 241
                 6677899*******9999*********************************99999887.567777666666666651114445667788888887777646788888876666665..57899************************************9999999751579999999999988666 PP

  == domain 2    score: 36.0 bits;  conditional E-value: 1.3e-11
   TIGR01288  19 vvndlsftiaagecfgllgpngagkstiarlvlglispdegkitvlgepvpararla..........rakigvvpqfdn....ldreftvrenllvfgryfglstreieevipsllefarleskadvrvadlsggmkrrltlaralindpqllildepttgldpharhliwerlrsll.argktilltthlmeeaerlcdrlc 206
                  ++ +sf + +g    l+g ngagk+t+ +l+ g     +g++ vlg      + l             ++  v +       + + f v   +    r  g+s   +e+    l+e+  l+   + r+ ++s g +rr  l   l+   qll+lde tt ld  +r+ + + lr     rg t++ +th+++  +     l 
  MMETSP1137-20121227|7645_1 336 ALHSVSFELERGVRCLLVGANGAGKTTLLKLLGGKHMLPRGTVDVLGYSAFHDTELNtltsllsgdwTRQVACVGNGVPfqadFSMGFMVGSFVEALVR-DGMSEAVVEQRKARLVELLDLD--MEWRLHKVSDGQRRRAQLFLKLLRPSQLLLLDEVTTDLDVLSRQALLQFLREESdLRGTTVVYSTHIFDGLDDWPTHLL 535
                 56789*******9999******************************97765554443111111111112344444333300004444444444444444.3788888888888999986665..68899*****************************************99999764269**********998776655555 PP

>> TIGR02314  ABC_MetN: D-methionine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.7   0.0   2.5e-13   1.5e-11      20     220 ..      59     256 ..      48     265 .. 0.86
   2 !   29.1   0.0   1.7e-09     1e-07      17     206 ..     333     529 ..     325     612 .. 0.78

  Alignments for each domain:
  == domain 1    score: 41.7 bits;  conditional E-value: 2.5e-13
   TIGR02314  20 aldnvslfvpkgqifgvigasgagkstlircvnllekptsgavivdgkdlttlsnaelvkarrqigmifqhf.nllssrtvfgnvalplelentpkekikrkvtellalvglsdkkdsypsnlsggqkqrvaiaralasepkvllcdeatsaldpattqsilellkeinrrlgltillithemdvvkricdevavidkgeli 220
                  l +vs+ +p+g  + ++ga gagkstl+  +       + + +v g+    ++++ l+     +   + h   ++     ++ + +   +++++     ++v  l+ l+ + +k +   + +s gq++rv i   l     vll de t+ ld  + q +l++l+e   + g+  +  th +d +     ++a +++ge++
  MMETSP1137-20121227|7645_1  59 QLRDVSMALPRGARCMLLGANGAGKSTLMSVIGGRHLVEEESAMVLGRP--AFHDTSLASRVALLTGNWTHTvSFVGHNVPYQAMEVSRLIASHSVGVDPERVRRLVQLLEVDEKWNL--TTVSDGQRRRVQILCKLIKPCEVLLLDEITTDLDLLARQDLLQFLREESEERGVCTIYCTHIFDGLDGWPTHIAYLSGGEMV 256
                 489***************************9998888888888999985..567777777666665566665145555555788888877888888777899****999999999875..789****************************************************************************998 PP

  == domain 2    score: 29.1 bits;  conditional E-value: 1.7e-09
   TIGR02314  17 kikaldnvslfvpkgqifgvigasgagkstlircv...nllekpts...gavivdgkd...lttlsnaelvkarrqigmifqhfnllssrtvfgnvalplelentpkekikrkvtellalvglsdkkdsypsnlsggqkqrvaiaralasepkvllcdeatsaldpattqsilellkeinrrlgltillithemdvvkr 206
                 k  al+ vs+ + +g  + ++ga gagk+tl++ +    +l + t    g      ++   lt+l   + +++   +g        +s   + g     l  ++ ++  ++++ + l+ l+ l    +     +s gq++r  +   l    ++ll de t+ ld  + q++l++l+e     g t++  th +d +  
  MMETSP1137-20121227|7645_1 333 KSAALHSVSFELERGVRCLLVGANGAGKTTLLKLLggkHMLPRGTVdvlGYSAFHDTElntLTSLLSGDWTRQVACVGNGVPFQADFSMGFMVGSFVEALVRDGMSEAVVEQRKARLVELLDLDM--EWRLHKVSDGQRRRAQLFLKLLRPSQLLLLDEVTTDLDVLSRQALLQFLREESDLRGTTVVYSTHIFDGLDD 529
                 5689****************************9872224665555311122233334411155555666666666666555555567777889999999*********************99965..5566799**********************************************999*********9887665 PP

>> TIGR03265  PhnT2: putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.6   0.1   6.1e-13   3.8e-11      19     193 ..      59     235 ..      51     240 .. 0.87
   2 !   17.0   0.0   9.5e-06   0.00059      16      63 ..     333     380 ..     318     389 .. 0.86
   3 !   18.3   0.3   3.8e-06   0.00023     101     196 ..     432     525 ..     426     553 .. 0.84

  Alignments for each domain:
  == domain 1    score: 40.6 bits;  conditional E-value: 6.1e-13
   TIGR03265  19 alkdislsvkkgelvclLGPsGCGkttLLriiaGLekqdaGaillggrditrlppqkrdyGivfqsYaLfPnltvaeniayGLknkkl..kreevaerveelLelvglsgseekyP.gqlsGGqqqrvaLaralalsPglLLLDePlsaLDakvrekLreelkklqrklgvttimvth 193
                 +l+d+s+++ +g    lLG  G Gk+tL+ +i G    ++ + ++ gr   + ++ +    ++  +++   ++ v +n+ y   +  +    + v    e++  lv+l +++ek+  + +s Gq++rv +   l+   ++LLLDe    LD   r+ L + l++  ++ gv ti  th
  MMETSP1137-20121227|7645_1  59 QLRDVSMALPRGARCMLLGANGAGKSTLMSVIGGRHLVEEESAMVLGRPAFHDTSLASRVALLTGNWTHTVSF-VGHNVPYQAMEVSRliASHSVGVDPERVRRLVQLLEVDEKWNlTTVSDGQRRRVQILCKLIKPCEVLLLDEITTDLDLLARQDLLQFLREESEERGVCTIYCTH 235
                 699**********************************999999999999999888888899999999876664.899****876544401344444445678899999999999974789*********************************************************9 PP

  == domain 2    score: 17.0 bits;  conditional E-value: 9.5e-06
   TIGR03265  16 aftalkdislsvkkgelvclLGPsGCGkttLLriiaGLekqdaGaill 63 
                 + +al+++s+++++g    l+G  G GkttLL+++ G     +G++ +
  MMETSP1137-20121227|7645_1 333 KSAALHSVSFELERGVRCLLVGANGAGKTTLLKLLGGKHMLPRGTVDV 380
                 5679***********999999****************99999999865 PP

  == domain 3    score: 18.3 bits;  conditional E-value: 3.8e-06
   TIGR03265 101 LknkklkreevaerveelLelvglsgseekyPgqlsGGqqqrvaLaralalsPglLLLDePlsaLDakvrekLreelkklqrklgvttimvthdqe 196
                 L   +++++ v++r ++l+el++l+   + +  ++s Gq++r  L   l    +lLLLDe    LD   r+ L + l++     g t +  th  +
  MMETSP1137-20121227|7645_1 432 LVRDGMSEAVVEQRKARLVELLDLDMEWRLH--KVSDGQRRRAQLFLKLLRPSQLLLLDEVTTDLDVLSRQALLQFLREESDLRGTTVVYSTHIFD 525
                 667789999999************9888765..89***************999*************************988888888888888655 PP

>> TIGR03411  urea_trans_UrtD: urea ABC transporter, ATP-binding protein UrtD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.6   0.1   1.7e-09   1.1e-07      18     197 ..      60     230 ..      55     258 .. 0.78
   2 !   39.5   0.0   1.7e-12     1e-10       5     225 ..     322     547 ..     318     556 .. 0.77

  Alignments for each domain:
  == domain 1    score: 29.6 bits;  conditional E-value: 1.7e-09
   TIGR03411  18 lndlslsveegelrviiGpnGaGkttllDvitGktrpdeGsvlfkgk.dltklkeaeiarlGigRkfqkpsvfeeltvlenlelalkadksvlallfarlskeekerieevleligLeekadkkaglLshGqkqwLeigmllvqepkllllDePvaGmtdeetektaellkelakersvvv 197
                 l+d+s+++ +g   +++G+nGaGk+tl+ vi G+   +e s+++ g+  +  ++ a+ + l  g    + s   +    + +e++        +l++++    + er++++++l++++ek  ++ +++s Gq+ +++i   l++  ++lllDe ++ +    ++   ++l+e ++er v  
  MMETSP1137-20121227|7645_1  60 LRDVSMALPRGARCMLLGANGAGKSTLMSVIGGRHLVEEESAMVLGRpAFHDTSLASRVALLTGNWTHTVSFVGHNVPYQAMEVS--------RLIASHSVGVDPERVRRLVQLLEVDEK--WNLTTVSDGQRRRVQILCKLIKPCEVLLLDEITTDLDLLARQDLLQFLREESEERGVCT 230
                 789999999999999*********************9999999999878888888877777777655555544444444444443........344445555667788888887777665..556789*************************9999998888888888888888777755 PP

  == domain 2    score: 39.5 bits;  conditional E-value: 1.7e-12
   TIGR03411   5 vedvsvsfdgfk..alndlslsveegelrviiGpnGaGkttllDvitGktrpdeGsvlfkgkdltklkeaeiarlGigR..kfqkpsvfeeltvlenlelalkadksvlallfarlskeeke.rieevleligLeekadkkaglLshGqkqwLeigmllvqepkllllDePvaGmtdeetektaellkelaker..svvvvehDmefvrelaekvtvlheGkvlaeGs 225
                 v+d+s  + g k  al+++s+++e+g   +++G+nGaGkttll ++ Gk    +G+v + g +  + +e +  ++ ++   + q + v + +  + ++++ +     v al++  +s+++ e r ++++el+ L   ++++  ++s Gq+ + ++ + l++ ++llllDe ++ +    ++   ++l+e ++ r  +vv   h  + +++  +++  ++eG+v   G 
  MMETSP1137-20121227|7645_1 322 VHDLSWGYTGAKsaALHSVSFELERGVRCLLVGANGAGKTTLLKLLGGKHMLPRGTVDVLGYSAFHDTELNTLTSLLSGdwTRQVACVGNGVPFQADFSMGFMVGSFVEALVRDGMSEAVVEqRKARLVELLDL--DMEWRLHKVSDGQRRRAQLFLKLLRPSQLLLLDEVTTDLDVLSRQALLQFLREESDLRgtTVVYSTHIFDGLDDWPTHLLHMKEGTVAYVGP 547
                 5666666666543399********9988889**************************9999966665555554444443125689999999999********99999999998888877654045555565555..46778899****************************99999999999999987765441145555677777777777777777777766665 PP

>> TIGR02770  nickel_nikD: nickel import ATP-binding protein NikD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.4   0.0    0.0021      0.13       3      56 ..      61     116 ..      59     154 .. 0.80
   2 !   22.9   0.0   1.6e-07   9.8e-06     126     211 ..     177     262 ..     157     278 .. 0.85
   3 !   37.5   0.0   5.4e-12   3.4e-10       3     204 ..     338     542 ..     336     551 .. 0.87

  Alignments for each domain:
  == domain 1    score: 9.4 bits;  conditional E-value: 0.0021
   TIGR02770   3 qdvnlslkrgkvlalvGesGsGksltalai..lglldkeltktsGeilldgkelaa 56 
                 +dv++ l rg  + l+G+ G+Gks+  + i    l ++e + + G+ ++++ +la+
  MMETSP1137-20121227|7645_1  61 RDVSMALPRGARCMLLGANGAGKSTLMSVIggRHLVEEESAMVLGRPAFHDTSLAS 116
                 699*********************76554411457777778888887777777765 PP

  == domain 2    score: 22.9 bits;  conditional E-value: 1.6e-07
   TIGR02770 126 lsGGmlqRvmialallleaplliaDePttdlDvvvqaevLklleelrekrglgillithDlgvvaeladevavmekGkivergtvk 211
                 +s G   Rv i   l+    +l+ De ttdlD+ ++  +L+ l+e  e+rg+  ++ th +  +     ++a ++ G++v +++++
  MMETSP1137-20121227|7645_1 177 VSDGQRRRVQILCKLIKPCEVLLLDEITTDLDLLARQDLLQFLREESEERGVCTIYCTHIFDGLDGWPTHIAYLSGGEMVFCKPIE 262
                 68888899999777777778***************************************999999999999999999999888765 PP

  == domain 3    score: 37.5 bits;  conditional E-value: 5.4e-12
   TIGR02770   3 qdvnlslkrgkvlalvGesGsGkslta..lailglldkeltktsGeilldgkelaal.....alrgreialilq.nPrsafnPlltikeqlletlkaleklskqakelivealeavgLeeaeevlkkypfelsGGmlqRvmialallleaplliaDePttdlDvvvqaevLklleelrekrglgillithDlgvvaeladevavmekGki 204
                 + v+++l rg  + lvG+ G+Gk++    l+   +l+ +++ + G  ++++ el++l         r++a++    P +a   +  +   ++e+l   +  ++  +++ ++ +e  +L+     ++   +++s G   R  + l ll  + ll+ De ttdlDv ++  +L+ l+e  + rg+++++ th +  +     +++ m++G +
  MMETSP1137-20121227|7645_1 338 HSVSFELERGVRCLLVGANGAGKTTLLklLGGKHMLPRGTVDVLGYSAFHDTELNTLtsllsGDWTRQVACVGNgVPFQADFSMGFMVGSFVEALVRDGMSEAVVEQRKARLVELLDLD-----MEWRLHKVSDGQRRRAQLFLKLLRPSQLLLLDEVTTDLDVLSRQALLQFLREESDLRGTTVVYSTHIFDGLDDWPTHLLHMKEGTV 542
                 789********************975511455679********************9987665334577888765269999999999999******999999888888888888888888.....7777899***********************************************************99999998888888888877 PP

>> TIGR01193  bacteriocin_ABC: ABC-type bacteriocin transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.4   0.0   3.4e-08   2.1e-06     490     654 ..      60     219 ..      47     235 .. 0.76
   2 !   42.0   0.0   1.6e-13     1e-11     474     669 ..     320     524 ..     313     549 .. 0.79

  Alignments for each domain:
  == domain 1    score: 24.4 bits;  conditional E-value: 3.4e-08
   TIGR01193 490 ledislkikknekitlvGlsGsGkstlakllvkff.qaesGeillngkslkdidkhelrqlinylPqePfifsGsilenlllgakenvsqeeikkaveiaeikddieklplGyqtelseeassisgGqkqrlalarallsdskvlildestsnldlltekkivenl 654
                 l d+s+ + +  +  l+G  G+Gkstl+ ++ + +  +e+  + l+   ++d +  +   l++    + + f G    n+  +a   ++  +++++ ++    + +++l + ++ +   + +++s Gq++r+ +   l+ +++vl+lde t++ldll  + +++ l
  MMETSP1137-20121227|7645_1  60 LRDVSMALPRGARCMLLGANGAGKSTLMSVIGGRHlVEEESAMVLGRPAFHDTSLASRVALLTGNWTHTVSFVGH---NVPYQA---MEVSRLIASHSVGVDPERVRRLVQLLEVDEKWNLTTVSDGQRRRVQILCKLIKPCEVLLLDEITTDLDLLARQDLLQFL 219
                 789999999999999999999999999999987664677778889988888876655555555555555555554...443333...233344444444444556777777777777778889**********************************999887755 PP

  == domain 2    score: 42.0 bits;  conditional E-value: 1.6e-13
   TIGR01193 474 ievndvsysy.GygsevledislkikknekitlvGlsGsGkstlakllvkffqaesGeil.lngkslkdidkhelrqli..nylPqePfifsGsile.nlllgakenvsqee.ikkaveiaeikddieklplGyqtelseeassisgGqkqrlalarallsdskvlildestsnldlltekkivenllk...lkdktiifvahrl 669
                 i v+d+s+ y G  s +l+ +s+++++  +  lvG  G+Gk+tl kll + +    G++  l+   ++d + ++l  l+  ++  q   + +G  ++ ++ +g   +   e  + + ++ a +++   +l   ++ ++     ++s Gq++r  l   ll +s++l+lde+t++ld+l  + +++ l +   l+  t+++ +h +
  MMETSP1137-20121227|7645_1 320 IAVHDLSWGYtGAKSAALHSVSFELERGVRCLLVGANGAGKTTLLKLLGGKHMLPRGTVDvLGYSAFHDTELNTLTSLLsgDWTRQVACVGNGVPFQaDFSMGFMVGSFVEAlVRDGMSEAVVEQRKARLVELLDLDMEWRLHKVSDGQRRRAQLFLKLLRPSQLLLLDEVTTDLDVLSRQALLQFLREesdLRGTTVVYSTHIF 524
                 7899999999778899************************************9999*99626777899999999999873357888888888876542566777666655551445666777777777888888888888888*************************************9998877532226777888877765 PP

>> TIGR01842  type_I_sec_PrtD: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   1.5e-05   0.00092     324     369 ..      48      95 ..      24     109 .. 0.81
   2 !    8.3   0.0    0.0026      0.16     454     514 ..     176     237 ..     116     260 .. 0.89
   3 !   23.4   0.0   6.7e-08   4.2e-06     302     380 ..     305     383 ..     291     398 .. 0.86
   4 !   18.6   0.0   1.9e-06   0.00012     454     536 ..     463     547 ..     442     555 .. 0.86

  Alignments for each domain:
  == domain 1    score: 15.7 bits;  conditional E-value: 1.5e-05
   TIGR01842 324 lvppeekk..ktlkgisfalkaGealaiiGpsgsGkssLarllvGvwl 369
                  vp ++++    l+++s+al  G+   ++G+ g+Gks+L+ ++ G  l
  MMETSP1137-20121227|7645_1  48 HVPGTQAAykLQLRDVSMALPRGARCMLLGANGAGKSTLMSVIGGRHL 95 
                 45544443226799***************************9998765 PP

  == domain 2    score: 8.3 bits;  conditional E-value: 0.0026
   TIGR01842 454 aLsgGqrqRiaLaRalygdPklvvLDePnanLDeeGeqalakalke.lkarkitvvvithrp 514
                 ++s Gqr R+ +   l     +++LDe  ++LD    q l++ l e   +r++ ++  th  
  MMETSP1137-20121227|7645_1 176 TVSDGQRRRVQILCKLIKPCEVLLLDEITTDLDLLARQDLLQFLREeSEERGVCTIYCTHIF 237
                 789***************99***********************9762678899999999965 PP

  == domain 3    score: 23.4 bits;  conditional E-value: 6.7e-08
   TIGR01842 302 pareealklPepegelevenvslvppeekkktlkgisfalkaGealaiiGpsgsGkssLarllvGvwlpasGsvrlDga 380
                 p+++    +P+    ++v ++s    ++k   l+ +sf+l+ G    ++G+ g+Gk++L +ll G  +  +G+v + g+
  MMETSP1137-20121227|7645_1 305 PTASCGDVVPKGGPAIAVHDLSWGYTGAKSAALHSVSFELERGVRCLLVGANGAGKTTLLKLLGGKHMLPRGTVDVLGY 383
                 55555556788888999********************************************************987665 PP

  == domain 4    score: 18.6 bits;  conditional E-value: 1.9e-06
   TIGR01842 454 aLsgGqrqRiaLaRalygdPklvvLDePnanLDeeGeqalakalke.lkarkitvvvithrpslle.lvdkilvlkdGalkafGe 536
                 ++s Gqr R  L   l +  +l++LDe  ++LD    qal++ l e    r++tvv  th    l+    ++l +k+G+++  G 
  MMETSP1137-20121227|7645_1 463 KVSDGQRRRAQLFLKLLRPSQLLLLDEVTTDLDVLSRQALLQFLREeSDLRGTTVVYSTHIFDGLDdWPTHLLHMKEGTVAYVGP 547
                 689*****************************************86156788888889998877761567899999999998886 PP

>> TIGR01978  sufC: FeS assembly ATPase SufC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.3   0.0   1.2e-07   7.7e-06      15      53 ..      59      97 ..      52     117 .. 0.86
   2 !    8.7   0.0    0.0037      0.23     145     224 ..     177     256 ..     157     269 .. 0.70
   3 !   17.0   0.0     1e-05   0.00065      13      51 ..     334     372 ..     322     395 .. 0.86
   4 !   14.2   0.0   7.4e-05    0.0046     146     239 ..     465     558 ..     438     562 .. 0.79

  Alignments for each domain:
  == domain 1    score: 23.3 bits;  conditional E-value: 1.2e-07
   TIGR01978 15 iLkglnlevkkGevhaimGpnGsGkstLskvlaghekye 53
                 L+++++++ +G+  +++G+nG+GkstL++v+ g++ +e
  MMETSP1137-20121227|7645_1 59 QLRDVSMALPRGARCMLLGANGAGKSTLMSVIGGRHLVE 97
                599******************************998665 PP

  == domain 2    score: 8.7 bits;  conditional E-value: 0.0037
   TIGR01978 145 fsGGekkrneilqlalleP.klaiLDeiDsGlDvDalkivaegvnklree.ekalliithyerllelik..PdvvhvlldGriv 224
                  s G ++r +il  +l++P ++ +LDei   lD+ a + + + + +  ee    ++  th   +++ +   P+++  l  G++v
  MMETSP1137-20121227|7645_1 177 VSDGQRRRVQILC-KLIKPcEVLLLDEITTDLDLLARQDLLQFLREESEErGVCTIYCTH---IFDGLDgwPTHIAYLSGGEMV 256
                 6899*******96.5666648999**********99999988887765552333444455...444443226666666666666 PP

  == domain 3    score: 17.0 bits;  conditional E-value: 1e-05
   TIGR01978  13 keiLkglnlevkkGevhaimGpnGsGkstLskvlaghek 51 
                    L++++ e+++G    ++G+nG+Gk tL k l g++ 
  MMETSP1137-20121227|7645_1 334 SAALHSVSFELERGVRCLLVGANGAGKTTLLKLLGGKHM 372
                 56799*****************************99875 PP

  == domain 4    score: 14.2 bits;  conditional E-value: 7.4e-05
   TIGR01978 146 sGGekkrneilqlalleP.klaiLDeiDsGlDvDalkivaegvnklreeekalli.ithyerllelik..PdvvhvlldGrivksGdvelakelekkg 239
                 s G ++r +++ l+ll+P +l +LDe+   lDv + +++ + + +  + + ++++  th   +++ +   P+++  + +G+++  G ++la++  ++g
  MMETSP1137-20121227|7645_1 465 SDGQRRRAQLF-LKLLRPsQLLLLDEVTTDLDVLSRQALLQFLREESDLRGTTVVySTH---IFDGLDdwPTHLLHMKEGTVAYVGPLQLARKAVEQG 558
                 77889888876.78888846999**************9999998877764444430455...5555543388888999************99877776 PP

>> TIGR01186  proV: glycine betaine/L-proline transport ATP binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.9   0.1   1.7e-08     1e-06       6     209 ..      57     256 ..      52     271 .. 0.81
   2 !   11.4   0.0   0.00044     0.028       5      40 ..     333     368 ..     329     392 .. 0.86
   3 !   20.8   0.0   6.2e-07   3.9e-05     108     212 ..     447     546 ..     427     585 .. 0.86

  Alignments for each domain:
  == domain 1    score: 25.9 bits;  conditional E-value: 1.7e-08
   TIGR01186   6 klgvndvdleieeGeiiviiGlsGsGkstlvrlln..rliePtaGkilidGediaeisdaelrevrrkkiamviqkialfPhmtildnislglellkideqerkekalealklvdleeyedryPdelsGGmqqrvGlaralaaePdlllmdeafsaldPlirdelqdelvklqkklqktivfithdldealrlgdrivilkaGeiv 209
                 kl ++dv++++  G   +++G  G+Gkstl+ ++    l+e  +  +l  G       d+ l        +     ++++ h    + ++++  ++  +     e+ + +++l++++e  +     +s G+++rv ++  l    ++ll+de  + ld l r++l + l +  ++     ++ th +d        i+ l  Ge+v
  MMETSP1137-20121227|7645_1  57 KLQLRDVSMALPRGARCMLLGANGAGKSTLMSVIGgrHLVEEESAMVL--GRPA--FHDTSLASRVALLTGNWTHTVSFVGHNVPYQAMEVSRLIASHSVGVDPERVRRLVQLLEVDEKWN--LTTVSDGQRRRVQILCKLIKPCEVLLLDEITTDLDLLARQDLLQFLREESEERGVCTIYCTHIFDGLDGWPTHIAYLSGGEMV 256
                 677899***************************953368888887776..4432..34444522223345667788889999999999998888888888888899988888877744332..4689**********************************************************999877777777777777776 PP

  == domain 2    score: 11.4 bits;  conditional E-value: 0.00044
   TIGR01186   5 lklgvndvdleieeGeiiviiGlsGsGkstlvrlln 40 
                  + ++++v++e+e G    ++G  G+Gk+tl++ll 
  MMETSP1137-20121227|7645_1 333 KSAALHSVSFELERGVRCLLVGANGAGKTTLLKLLG 368
                 346789***************************985 PP

  == domain 3    score: 20.8 bits;  conditional E-value: 6.2e-07
   TIGR01186 108 ekalealklvdleeyedryPdelsGGmqqrvGlaralaaePdlllmdeafsaldPlirdelqdelvklqkklqktivfithdldealrlgdrivilkaGeivqvG 212
                  +  e+l l d+e       +++s G+++r  l   l    +lll+de  + ld l r+ l + l +  +    t+v+ th +d        +  +k+G +  vG
  MMETSP1137-20121227|7645_1 447 ARLVELLDL-DME----WRLHKVSDGQRRRAQLFLKLLRPSQLLLLDEVTTDLDVLSRQALLQFLREESDLRGTTVVYSTHIFDGLDDWPTHLLHMKEGTVAYVG 546
                 333333322.332....235899*************************************************************999999999999999999988 PP

>> TIGR03005  ectoine_ehuA: ectoine/hydroxyectoine ABC transporter, ATP-binding protein EhuA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.4   0.1     2e-07   1.2e-05      16     206 ..      60     236 ..      52     278 .. 0.79
   2 !   35.4   0.0   2.2e-11   1.3e-09      15     225 ..     336     542 ..     322     562 .. 0.83

  Alignments for each domain:
  == domain 1    score: 22.4 bits;  conditional E-value: 2e-07
   TIGR03005  16 ldglelevaaGekvaliGpsGsGkstilrilmtletideGsikvegeqlyhmkgrkGklvpadekhlrkvrekiGmvfqsfnlfphktvldnvteapvlvkGvaraeaekravelldmvGladkadalpaqlsGGqkqrvaiaralalrpkvllfdevtsaldpelveevlnvlrrlasetdltmllvthe 206
                 l ++++ + +G +  l+G  G+Gkst++ ++     ++e s  v g   +h  + + ++       l        + f   n+ p+++ ++   +   +  Gv + +  +r v+ll++    +k +   + +s Gq++rv i   l     vll+de+t+ ld    +++l+ lr+ ++e+ +  +  th 
  MMETSP1137-20121227|7645_1  60 LRDVSMALPRGARCMLLGANGAGKSTLMSVIGGRHLVEEESAMVLGRPAFHDTSLASRV------ALLTGNWTHTVSFVGHNV-PYQA-MEVSRLIASHSVGVDPERV-RRLVQLLEV---DEKWN--LTTVSDGQRRRVQILCKLIKPCEVLLLDEITTDLDLLARQDLLQFLREESEERGVCTIYCTHI 236
                 56778889999999999999999999999999999999999999999999988433333......333333333445666675.5543.3334445567889987554.577888875...45544..4679**************9999*********************************99999996 PP

  == domain 2    score: 35.4 bits;  conditional E-value: 2.2e-11
   TIGR03005  15 vldglelevaaGekvaliGpsGsGkstilrilmtletideGsikvegeqlyhmkgrkG..klvpad.ekhlrkvrekiGmvfqsfnlfphktvldnvteapvlvkGvaraeaekravelldmvGladkadalpaqlsGGqkqrvaiaralalrpkvllfdevtsaldpelveevlnvlrrlasetdltmllvthemgfarefadrvlffdkGki 225
                  l+ +++e+++G +  l+G  G+Gk+t+l++l     +  G++ v g + +h    +   +l+  d  + ++ v +  G+ fq    f    ++   +ea v+  G++ a  e+r  +l++++ l         ++s Gq++r  +   l    ++ll+devt+ ld    + +l+ lr+ +  +  t++  th +    +    +l ++ G +
  MMETSP1137-20121227|7645_1 336 ALHSVSFELERGVRCLLVGANGAGKTTLLKLLGGKHMLPRGTVDVLGYSAFHDTELNTltSLLSGDwTRQVACVGN--GVPFQA--DFSMGFMVGSFVEALVR-DGMSEAVVEQRKARLVELLDLDMEW--RLHKVSDGQRRRAQLFLKLLRPSQLLLLDEVTTDLDVLSRQALLQFLREESDLRGTTVVYSTHIFDGLDDWPTHLLHMKEGTV 542
                 688999**********************************************986654225666552344554444..667885..57777888999999876.7*****************9997554..45689**********99997777999**********99999999999999999999999999987777777666666666665 PP

>> TIGR02633  xylG: D-xylose ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.5   0.0   0.00025     0.015      17      50 ..      60      93 ..      53     103 .. 0.89
   2 !   17.0   0.0   5.6e-06   0.00035     120     225 ..     158     261 ..     131     274 .. 0.86
   3 !   29.5   0.0   8.9e-10   5.5e-08      15     203 ..     335     526 ..     327     543 .. 0.83

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 0.00025
   TIGR02633 17 ldnidlklraGeivslcGenGaGkstlmkvlsgv 50
                l ++++ l  G    l G nGaGkstlm v+ g 
  MMETSP1137-20121227|7645_1 60 LRDVSMALPRGARCMLLGANGAGKSTLMSVIGGR 93
                678999999999999***************9875 PP

  == domain 2    score: 17.0 bits;  conditional E-value: 5.6e-06
   TIGR02633 120 rakellrelkldasnvtrpvsdlGlGqqqlveiakalnkqvrllildepsaslteketeilldiird.lkakgvacvyishkleevkavsdtisvirdGqhvatkda 225
                 r+++l++ l++d++ +   v     Gq++ v+i   l k   +l+lde ++ l     + ll+ +r+  +++gv  +y +h ++ ++    +i+ +  G+ v  k++
  MMETSP1137-20121227|7645_1 158 RVRRLVQLLEVDEKWNLTTV---SDGQRRRVQILCKLIKPCEVLLLDEITTDLDLLARQDLLQFLREeSEERGVCTIYCTHIFDGLDGWPTHIAYLSGGEMVFCKPI 261
                 77788888888877766655...569***************************************9725789************99999999999998888877766 PP

  == domain 3    score: 29.5 bits;  conditional E-value: 8.9e-10
   TIGR02633  15 kaldnidlklraGeivslcGenGaGkstlmkvlsgvy..phGtyd..Geilfegeelka..ssirdterkGiviihqeltlvkelsvlenif.lGneitlkGglmdydamvlrakellrelkldasnvtrpvsdlGlGqqqlveiakalnkqvrllildepsaslteketeilldiirdl.kakgvacvyishklee 203
                  al++++++l+ G    l G nGaGk+tl+k+l g +  p Gt d  G   f+++el++  s ++    + ++ + + + +  ++s+   +  + + +  +G  m+++ + +r  +l++ l ld++   + vsd   Gq++  ++   l +  +ll+lde ++ l     + ll+ +r+    +g + vy +h ++ 
  MMETSP1137-20121227|7645_1 335 AALHSVSFELERGVRCLLVGANGAGKTTLLKLLGGKHmlPRGTVDvlGYSAFHDTELNTltSLLSGDWTRQVACVGNGVPFQADFSMGFMVGsFVEALVRDG--MSEAVVEQRKARLVELLDLDMEWRLHKVSD---GQRRRAQLFLKLLRPSQLLLLDEVTTDLDVLSRQALLQFLREEsDLRGTTVVYSTHIFDG 526
                 69*******************************9955449**99877889999999986325677788899*************998655531234567777..9999999********999999887776665...677777777788899*************************97515699999999998775 PP

>> TIGR01184  ntrCD: nitrate ABC transporter, ATP-binding proteins C and D
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.0   0.1   3.7e-11   2.3e-09       1     176 [.      60     238 ..      60     241 .. 0.81
   2 !    9.3   0.0    0.0027      0.17       2      45 ..     338     381 ..     337     387 .. 0.87
   3 !   16.7   0.0   1.5e-05   0.00094      90     197 ..     437     546 ..     421     553 .. 0.79

  Alignments for each domain:
  == domain 1    score: 35.0 bits;  conditional E-value: 3.7e-11
   TIGR01184   1 lkdvdleikkgefislighsgcgkstllnliaglekptsgavilegkei..tepgpdrmvvfqnysllpwltvrenialavdavlrdlskserreiveehielvglreaadk.rpeqlsggmkqrvaiaralsirpklllldepfgaldaltreelqekllkiveearvtvlmvthdvd 176
                 l+dv++ + +g    l+g  g gkstl+ +i g +   + + ++ g+    +     r+ ++          v +n+     +v r ++ +      e    lv+l e  +k + + +s g ++rv i   l    ++lllde    ld l+r++l + l +  ee+ v ++  th  d
  MMETSP1137-20121227|7645_1  60 LRDVSMALPRGARCMLLGANGAGKSTLMSVIGGRHLVEEESAMVLGRPAfhDTSLASRVALLTGNWTHTVSFVGHNVPYQAMEVSRLIASHSVGVDPERVRRLVQLLEVDEKwNLTTVSDGQRRRVQILCKLIKPCEVLLLDEITTDLDLLARQDLLQFLREESEERGVCTIYCTHIFD 238
                 578999999**************************9999999999997622334467777666555556667788886666666655544443333344456888888888745799***************9999****************************************776 PP

  == domain 2    score: 9.3 bits;  conditional E-value: 0.0027
   TIGR01184   2 kdvdleikkgefislighsgcgkstllnliaglekptsgavile 45 
                 + v++e+++g    l+g  g gk+tll l+ g +    g+v + 
  MMETSP1137-20121227|7645_1 338 HSVSFELERGVRCLLVGANGAGKTTLLKLLGGKHMLPRGTVDVL 381
                 67899999999999******************998888888665 PP

  == domain 3    score: 16.7 bits;  conditional E-value: 1.5e-05
   TIGR01184  90 erreivee.hielvglre.aadkrpeqlsggmkqrvaiaralsirpklllldepfgaldaltreelqekllkiveearvtvlmvthdvdealllsdrvvmltngpaakig 197
                   +++ve+ +  lv+l +   + r +++s g ++r  +   l    +llllde    ld l+r+ l + l +  + + +tv+  th  d        ++ + +g  a++g
  MMETSP1137-20121227|7645_1 437 MSEAVVEQrKARLVELLDlDMEWRLHKVSDGQRRRAQLFLKLLRPSQLLLLDEVTTDLDVLSRQALLQFLREESDLRGTTVVYSTHIFDGLDDWPTHLLHMKEGTVAYVG 546
                 556777762467888765156889**************9999877799*******************999999999999*******988765555666666666666655 PP

>> TIGR01187  potA: polyamine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.9   0.1   7.3e-12   4.6e-10       1     161 [.      75     237 ..      75     263 .. 0.81
   2 !   10.1   0.1    0.0011     0.066       1      28 [.     352     379 ..     352     391 .. 0.88
   3 !   19.2   0.6   1.8e-06   0.00011      75     159 ..     440     522 ..     428     529 .. 0.84

  Alignments for each domain:
  == domain 1    score: 36.9 bits;  conditional E-value: 7.3e-12
   TIGR01187   1 lLGpsGsGkttlLrllaGleeldsGkilldgedvtevpaekrsvnvvfqsyaLfPhmtveenvafg.Lkmrkv.pkaeikervkeaLelvqleefakr.kpsqlsGGqrqrvalaravvkkPkiLLlDeplsaLDkkLrdqmqlelkalqeklGitvvlvthDq 161
                 lLG+ G+Gk+tl+ ++ G + +++ + ++ g    + ++    v ++  ++       v +nv +  + + ++     +    + + +lvql e+ ++ + + +s Gqr+rv +   ++k  ++LLlDe  + LD   r+ + + l++  e+ G+ +++ th  
  MMETSP1137-20121227|7645_1  75 LLGANGAGKSTLMSVIGGRHLVEEESAMVLGRPAFHDTSLASRVALLTGNWTHT-VSFVGHNVPYQaMEVSRLiASHSVGVDPERVRRLVQLLEVDEKwNLTTVSDGQRRRVQILCKLIKPCEVLLLDEITTDLDLLARQDLLQFLREESEERGVCTIYCTHIF 237
                 89**********************9999999999999999999***99999743.345889999962444443133333333455667888887766526899***********************************************************65 PP

  == domain 2    score: 10.1 bits;  conditional E-value: 0.0011
   TIGR01187   1 lLGpsGsGkttlLrllaGleeldsGkil 28 
                 l+G+ G+GkttlL+ll G + l  G + 
  MMETSP1137-20121227|7645_1 352 LVGANGAGKTTLLKLLGGKHMLPRGTVD 379
                 68****************9999888875 PP

  == domain 3    score: 19.2 bits;  conditional E-value: 1.8e-06
   TIGR01187  75 aeikervkeaLelvqleefakrkpsqlsGGqrqrvalaravvkkPkiLLlDeplsaLDkkLrdqmqlelkalqeklGitvvlvth 159
                 a +++r   ++el +l+   + + +++s Gqr+r  l   +    ++LLlDe  + LD   r+ + + l++  +  G tvv+ th
  MMETSP1137-20121227|7645_1 440 AVVEQRKARLVELLDLD--MEWRLHKVSDGQRRRAQLFLKLLRPSQLLLLDEVTTDLDVLSRQALLQFLREESDLRGTTVVYSTH 522
                 44555555444444443..36789************************************************999*********9 PP

>> TIGR03410  urea_trans_UrtE: urea ABC transporter, ATP-binding protein UrtE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.7   0.1   9.7e-08     6e-06      16     185 ..      60     230 ..      52     263 .. 0.75
   2 !   31.5   0.0   3.9e-10   2.4e-08       3     213 ..     322     545 ..     320     557 .. 0.73

  Alignments for each domain:
  == domain 1    score: 23.7 bits;  conditional E-value: 9.7e-08
   TIGR03410  16 lrdvslevekgevvavlGrngvGkttllkalvgllkvksGeieleged.itklkpeervkaGiayvpqGreifpkltveenlelglealkkkekkipeeiyelFPvlkemlkRrgGdLsGGqqqqlaiaRaLvtePklllLDePteGiqPsiikeiekvikelakekdlai 185
                 lrdvs+ +++g    +lG ng+Gk+tl+  + g + v++ + ++ g+  +++++  +rv+   +      + + +      +e++   ++++    pe++  l  +l+  +k +   +s Gq+  + i   L++  ++llLDe t  +     +++ + ++e ++e+++  
  MMETSP1137-20121227|7645_1  60 LRDVSMALPRGARCMLLGANGAGKSTLMSVIGGRHLVEEESAMVLGRPaFHDTSLASRVALLTGNWTHTVSFVGHNVPYQAMEVSRLIASHSVGVDPERVRRLVQLLEVDEKWNLTTVSDGQRRRVQILCKLIKPCEVLLLDEITTDLDLLARQDLLQFLREESEERGVCT 230
                 89*******************************9999888887777761556666778877766666665555555555555555555555455557888888888888888899999***************999******99877766666666666666666665555 PP

  == domain 2    score: 31.5 bits;  conditional E-value: 3.9e-10
   TIGR03410   3 venlevaYg..esevlrdvslevekgevvavlGrngvGkttllkalvgllkvksGeieleg......editklkpe..ervkaGiayvpqGreifpkltveenlelglealkkk...ekkipeeiyelFPvlkemlkRrgGdLsGGqqqqlaiaRaLvtePklllLDePteGiqPsiikeiekvikelakekdlaillveqvldfaleladrylvlerGevvae 213
                 v++l+  Y   +s +l++vs+e+e+g    ++G ng+Gkttllk l g +   +G++ + g      +++++l++      ++ +a v  G    +++++   +   +eal ++   e  ++++   l  +l+  ++ r  ++s Gq+    +   L+   +lllLDe t  +     + + + ++e ++ ++ +++ + + +d   +   ++l +++G+v   
  MMETSP1137-20121227|7645_1 322 VHDLSWGYTgaKSAALHSVSFELERGVRCLLVGANGAGKTTLLKLLGGKHMLPRGTVDVLGysafhdTELNTLTSLlsGDWTRQVACVGNGVPFQADFSMGFMVGSFVEALVRDgmsEAVVEQRKARLVELLDLDMEWRLHKVSDGQRRRAQLFLKLLRPSQLLLLDEVTTDLDVLSRQALLQFLREESDLRGTTVVYSTHIFDGLDDWPTHLLHMKEGTVAYV 545
                 66777777422689************9999*************************9986551111115555555431123456788888888888888877766666666555444355566666777777777777788899999999999999999999999999999888766666777777777777777888888888888888888888888877665 PP

>> TIGR03771  anch_rpt_ABC: anchored repeat-type ABC transporter, ATP-binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.3   0.6   2.3e-09   1.4e-07       5     171 ..      69     235 ..      65     241 .. 0.79
   2 !   12.9   0.1   0.00023     0.014       2      43 ..     343     384 ..     342     395 .. 0.85
   3 !   21.0   0.2   7.9e-07   4.9e-05     101     176 ..     450     527 ..     417     557 .. 0.74

  Alignments for each domain:
  == domain 1    score: 29.3 bits;  conditional E-value: 2.3e-09
   TIGR03771   5 kGellgllGpnGaGkttllrailglikvakGsvkvagkssrkgrreiGyvpqrhefawdfpidveqtvlsGragliGllrrpkkadfaavadalervklteladr.pvGelsGGqrqrvlvaralavkpslllldepftGldlpsqellvelfeelage.gtailmtth 171
                 +G    llG nGaGk+tl+  i g   v++ s  v g+++ +  +    v       w + ++  +  +  +a  +  l  ++       +   + v+l e+ ++  +  +s Gqr+rv +   l    ++lllde  t ldl +++ l+++++e ++e g + + +th
  MMETSP1137-20121227|7645_1  69 RGARCMLLGANGAGKSTLMSVIGGRHLVEEESAMVLGRPAFHDTSLASRVAL-LTGNWTHTVSFVGHNVPYQAMEVSRLIASHSVGVD-PERVRRLVQLLEVDEKwNLTTVSDGQRRRVQILCKLIKPCEVLLLDEITTDLDLLARQDLLQFLREESEErGVCTIYCTH 235
                 677788*****************999999999999**977777666666654.45579999998888888888888877666554332.34445668888887653799****************9999***************9999999998877652566666776 PP

  == domain 2    score: 12.9 bits;  conditional E-value: 0.00023
   TIGR03771   2 svdkGellgllGpnGaGkttllrailglikvakGsvkvagks 43 
                 ++++G    l+G nGaGkttll+ + g     +G+v v g s
  MMETSP1137-20121227|7645_1 343 ELERGVRCLLVGANGAGKTTLLKLLGGKHMLPRGTVDVLGYS 384
                 56777778899************9999999999999998865 PP

  == domain 3    score: 21.0 bits;  conditional E-value: 7.9e-07
   TIGR03771 101 vkltela.drpvGelsGGqrqrvlvaralavkpslllldepftGldlpsqellvelfeelag.egtailmtthdlaea 176
                 v+l +l  +  + ++s Gqr+r  +   l    +llllde  t ld+ s++ l+++++e ++  gt+++ +th +   
  MMETSP1137-20121227|7645_1 450 VELLDLDmEWRLHKVSDGQRRRAQLFLKLLRPSQLLLLDEVTTDLDVLSRQALLQFLREESDlRGTTVVYSTHIFDGL 527
                 444444313467899********99999999999********************999887753899*******76554 PP

>> TIGR03797  NHLM_micro_ABC2: NHLM bacteriocin system ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.3   0.0    0.0012     0.073     467     498 ..      58      89 ..      51      94 .. 0.90
   2 !   11.5   0.0   0.00026     0.016     587     620 ..     175     208 ..     171     224 .. 0.91
   3 !   23.5   0.0   6.2e-08   3.9e-06     451     501 ..     319     369 ..     299     384 .. 0.91
   4 ?    6.0   0.0     0.012      0.74     588     631 ..     463     506 ..     460     549 .. 0.85

  Alignments for each domain:
  == domain 1    score: 9.3 bits;  conditional E-value: 0.0012
   TIGR03797 467 lvLddvslkiepGefvaivGaSGsGKStllrl 498
                 l L+dvs+    G    + Ga G+GKStl+ +
  MMETSP1137-20121227|7645_1  58 LQLRDVSMALPRGARCMLLGANGAGKSTLMSV 89 
                 6799*************************976 PP

  == domain 2    score: 11.5 bits;  conditional E-value: 0.00026
   TIGR03797 587 gtlSGGQrQRlliAralvrkPrillfDEATSALD 620
                 +t+S GQr R+ i   l++  ++ll+DE T  LD
  MMETSP1137-20121227|7645_1 175 TTVSDGQRRRVQILCKLIKPCEVLLLDEITTDLD 208
                 79******************************99 PP

  == domain 3    score: 23.5 bits;  conditional E-value: 6.2e-08
   TIGR03797 451 aievdrvtFrYekdgplvLddvslkiepGefvaivGaSGsGKStllrlLLg 501
                 ai+v+ +++ Y+   ++ L++vs++ e G    +vGa G+GK tll+lL g
  MMETSP1137-20121227|7645_1 319 AIAVHDLSWGYTGAKSAALHSVSFELERGVRCLLVGANGAGKTTLLKLLGG 369
                 699*********************************************977 PP

  == domain 4    score: 6.0 bits;  conditional E-value: 0.012
   TIGR03797 588 tlSGGQrQRlliAralvrkPrillfDEATSALDNrtQaiVsesl 631
                 ++S GQr R  +   l r  ++ll+DE T  LD  + ++  + l
  MMETSP1137-20121227|7645_1 463 KVSDGQRRRAQLFLKLLRPSQLLLLDEVTTDLDVLSRQALLQFL 506
                 689******************************88776666655 PP

>> TIGR03269  met_CoM_red_A2: methyl coenzyme M reductase system, component A2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.8   0.0   0.00089     0.055      15      60 ..      59     104 ..      52     119 .. 0.88
   2 !   14.5   0.0   3.4e-05    0.0021     422     507 ..     170     256 ..     117     276 .. 0.71
   3 !   11.6   0.0   0.00025     0.015       4      50 ..     323     371 ..     318     386 .. 0.69
   4 !   12.8   0.0   0.00011    0.0066     158     251 ..     457     546 ..     424     561 .. 0.68

  Alignments for each domain:
  == domain 1    score: 9.8 bits;  conditional E-value: 0.00089
   TIGR03269  15 vlknisleleeGevlGilGksGaGksvllhllrGldeyeptsGkii 60 
                  l+++s+ l  G    +lG  GaGks l+ ++ G +  e++s  ++
  MMETSP1137-20121227|7645_1  59 QLRDVSMALPRGARCMLLGANGAGKSTLMSVIGGRHLVEEESAMVL 104
                 599******************************9998888887776 PP

  == domain 2    score: 14.5 bits;  conditional E-value: 3.4e-05
   TIGR03269 422 dklp.delseGerhrvalaqvlikeprivildeptGtmdpitkvkvaesilkareeleetfvivshdmdfvlevcdraalmrdGkiv 507
                 +k+   ++s+G+r rv +   lik   +++lde t  +d ++++++ + + +  ee +   +  +h  d +      +a +  G +v
  MMETSP1137-20121227|7645_1 170 EKWNlTTVSDGQRRRVQILCKLIKPCEVLLLDEITTDLDLLARQDLLQFLREESEERGVCTIYCTHIFDGLDGWPTHIAYLSGGEMV 256
                 33332579************************************9999999999988888888888877776666666666666666 PP

  == domain 3    score: 11.6 bits;  conditional E-value: 0.00025
   TIGR03269   4 enltkkfdgle..vlknisleleeGevlGilGksGaGksvllhllrGld 50 
                 ++l   + g +  +l+++s+ele G    ++G  GaGk+ ll+ll G +
  MMETSP1137-20121227|7645_1 323 HDLSWGYTGAKsaALHSVSFELERGVRCLLVGANGAGKTTLLKLLGGKH 371
                 5555555544322678888888888888888888888888888887754 PP

  == domain 4    score: 12.8 bits;  conditional E-value: 0.00011
   TIGR03269 158 lehrithiardlsGGekqrvvlarqlakeplllladeptGtldpktaklvhealkeavkeedislvltshwpeviedlsdkaillekGeiveeG 251
                 +e r+     ++s G+++r  l  +l +   lll de t  ld  + + + + l+e    ++ ++v ++h  + ++d  ++ + +++G++  +G
  MMETSP1137-20121227|7645_1 457 MEWRL----HKVSDGQRRRAQLFLKLLRPSQLLLLDEVTTDLDVLSRQALLQFLREESDLRGTTVVYSTHIFDGLDDWPTHLLHMKEGTVAYVG 546
                 33443....3456777777777777777777777777777777777777777777777777777777777777777777777777777777666 PP

>> TIGR00972  3a0107s01c2: phosphate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.9   0.0    0.0015     0.093      15      47 ..      58      90 ..      51     119 .. 0.83
   2 !   15.8   0.0   2.4e-05    0.0015     141     204 ..     173     238 ..     160     266 .. 0.79
   3 !   21.7   0.0   3.7e-07   2.3e-05       3     204 ..     321     525 ..     319     554 .. 0.79

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 0.0015
   TIGR00972 15 ealkdvnleikknkvtaliGpsGcGkstllrsl 47
                  l+dv++ +++ +   l+G  G+Gkstl+  +
  MMETSP1137-20121227|7645_1 58 LQLRDVSMALPRGARCMLLGANGAGKSTLMSVI 90
                5699*************************9876 PP

  == domain 2    score: 15.8 bits;  conditional E-value: 2.4e-05
   TIGR00972 141 salsLsGGqqqrlciaralavePevlLlDePtsaLDpiatekieeliqeLkkk..ytivivthnmq 204
                 + +++s Gq++r+ i   l    evlLlDe t  LD  a + + ++++e +++  +  +  th ++
  MMETSP1137-20121227|7645_1 173 NLTTVSDGQRRRVQILCKLIKPCEVLLLDEITTDLDLLARQDLLQFLREESEErgVCTIYCTHIFD 238
                 45789**************9999***********************99988773344455677655 PP

  == domain 3    score: 21.7 bits;  conditional E-value: 3.7e-07
   TIGR00972   3 evknlklfyg..ekealkdvnleikknkvtaliGpsGcGkstllrslnrlndlve.evrieGkvllegkdiydkkl.dvvelrkkvGmvfqkpnpfpmsiydnvayglrlkgikdkkeldeiveesLkkaalwdevkdklkksalsLsGGqqqrlciaralavePevlLlDePtsaLDpiatekieeliqeLkkk..ytivivthnmq 204
                 +v++l+  y+  +  al+ v++e+++     l+G  G+Gk+tll+ l   + l   +v + G   +++++++  +        ++v  v  +  pf+       ++g  ++ + +    +++ve+  +ka l + +  +++    ++s Gq++r  +   l    ++lLlDe t  LD  + + + ++++e ++    t+v  th ++
  MMETSP1137-20121227|7645_1 321 AVHDLSWGYTgaKSAALHSVSFELERGVRCLLVGANGAGKTTLLKLLGGKHMLPRgTVDVLGYSAFHDTELNTLTSlLSGDWTRQVACVG-NGVPFQADFSMGFMVGSFVEALVRDGMSEAVVEQ--RKARLVELLDLDMEWRLHKVSDGQRRRAQLFLKLLRPSQLLLLDEVTTDLDVLSRQALLQFLREESDLrgTTVVYSTHIFD 525
                 6777788786214569*******************************86555544167899*******9998764414456677777775.5678988888888889888876655555556655..7999**99999**********************999999**********************99877644478888898765 PP

>> TIGR01846  type_I_sec_HlyB: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.1   1.8e-06   0.00011     473     648 ..      60     231 ..      53     241 .. 0.76
   2 !   10.5   0.0   0.00046     0.028     449     514 ..     313     378 ..     293     388 .. 0.83
   3 !   17.3   0.0     4e-06   0.00025     593     673 ..     463     546 ..     447     563 .. 0.87

  Alignments for each domain:
  == domain 1    score: 18.4 bits;  conditional E-value: 1.8e-06
   TIGR01846 473 lsnlsldikaGeviGivGpsGsGkstltkllqrlyvPekGrvlvdgvdlaladPawlrrqvgvvlqenvlfsrs.irdnialakPaiseekviaaaklaGahdfiselkqGyetevgekGaalsGGqrqrialaralvanPrilildeatsaldyeseavimrnlreickgrtviii 648
                 l+++s+ ++ G    + G  G+Gkstl  ++   ++ e+   +v g   a  d ++l  +v++ l  n     s +  n+     a+++ ++ia   +    + + +l q  e + + + +++s Gqr+r+ +   l++   +l+lde t+ ld  + + + + lre +++r v +i
  MMETSP1137-20121227|7645_1  60 LRDVSMALPRGARCMLLGANGAGKSTLMSVIGGRHLVEEESAMVLGRP-AFHD-TSLASRVAL-LTGNWTHTVSfVGHNVPY--QAMEVSRLIASHSVGVDPERVRRLVQLLEVDEKWNLTTVSDGQRRRVQILCKLIKPCEVLLLDEITTDLDLLARQDLLQFLREESEERGVCTI 231
                 678888888888888999999999999888875555555566666653.4445.556666665.444555444415566654..467778888887777778888888887765555556789************************************************999877 PP

  == domain 2    score: 10.5 bits;  conditional E-value: 0.00046
   TIGR01846 449 lpelkGaiefenirfrykedspevlsnlsldikaGeviGivGpsGsGkstltkllqrlyvPekGrv 514
                 +p+   ai ++++ + y+  ++  l+ +s++++ G    +vG  G+Gk+tl kll   ++  +G v
  MMETSP1137-20121227|7645_1 313 VPKGGPAIAVHDLSWGYTGAKSAALHSVSFELERGVRCLLVGANGAGKTTLLKLLGGKHMLPRGTV 378
                 566666899999999***************************************976555555555 PP

  == domain 3    score: 17.3 bits;  conditional E-value: 4e-06
   TIGR01846 593 alsGGqrqrialaralvanPrilildeatsaldyeseavimrnlreic..kgrtviiiahrlstvraa.drilvlekGkivesG 673
                 ++s Gqr+r  l   l+   ++l+lde t+ ld  s +++ + lre +  +g tv+  +h ++ + +   ++l +++G ++  G
  MMETSP1137-20121227|7645_1 463 KVSDGQRRRAQLFLKLLRPSQLLLLDEVTTDLDVLSRQALLQFLREESdlRGTTVVYSTHIFDGLDDWpTHLLHMKEGTVAYVG 546
                 789*****************************************998744788*******999998752678889999988666 PP

>> TIGR02323  CP_lyasePhnK: phosphonate C-P lyase system protein PhnK
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.7   0.1     8e-07     5e-05      21     198 ..      63     236 ..      51     239 .. 0.79
   2 !   30.9   0.1   6.2e-10   3.8e-08       3     220 ..     319     546 ..     317     555 .. 0.73

  Alignments for each domain:
  == domain 1    score: 20.7 bits;  conditional E-value: 8e-07
   TIGR02323  21 vsf.lypGevlgivGesGsGkstllkalaarlladaGevtyesrsrelellalseaerrlllrtewGlvhqnprGlrmevsaGanigerllavgarhyGkiraaak.wlekveidaarikpaafsGGmqqrlqiarnlvtrprlvfm.eptGGl..vsvqarllllrglvrelglaviivthl 198
                 vs+ l  G    ++G  G+Gkstl++ + +r l ++ ++    r  +++    s a r  ll  +w         +  +v   a    rl+a      G   +  +  ++ +e+d+ + + ++ s G ++r+qi  +l+    ++++ e t  l  ++ q  l +lr+   e g+++i  th+
  MMETSP1137-20121227|7645_1  63 VSMaLPRGARCMLLGANGAGKSTLMSVIGGRHLVEEESAMVLGRPAFHD---TSLASRVALLTGNWTHTV---SFVGHNVPYQAMEVSRLIASH--SVGVDPERVRrLVQLLEVDE-KWNLTTVSDGQRRRVQILCKLIKPCEVLLLdEITTDLdlLARQDLLQFLREESEERGVCTIYCTHI 236
                 66634446667789******************99999999999997766...57789999******7432...234456666666667888873..46666555553778899999.8999******************99888888899998873555555559*****************7 PP

  == domain 2    score: 30.9 bits;  conditional E-value: 6.2e-10
   TIGR02323   3 llevselsksygskkgcr...vsf.lypGevlgivGesGsGkstllkalaarlladaGevtyesrsr..elellalseaerrlllrtewG.lvhq..nprGlrmevsaGanig...erllavgarhyGkiraaakwlekveidaarikpaafsGGmqqrlqiarnlvtrprlvfm.eptGGl..vsvqarllllrglvrelglaviivth.lavarllaqrllvmkqGrvvesG 220
                  + v++ls  y++ k+     vsf l  G    +vG  G+Gk+tllk l ++ +  +G+v     s    +el +l+      ll  +w   v    n   ++ + s G  +g   e l+  g+      +++a+ +e +++d+   + ++ s G ++r q+  +l+   +l+++ e t  l  +s qa l +lr+     g +v+  th +         ll mk+G v   G
  MMETSP1137-20121227|7645_1 319 AIAVHDLSWGYTGAKSAAlhsVSFeLERGVRCLLVGANGAGKTTLLKLLGGKHMLPRGTVDVLGYSAfhDTELNTLT-----SLLSGDWTrQVACvgNGVPFQADFSMGFMVGsfvEALVRDGMSEAVVEQRKARLVELLDLDM-EWRLHKVSDGQRRRAQLFLKLLRPSQLLLLdEVTTDLdvLSRQALLQFLREESDLRGTTVVYSTHiFDGLDDWPTHLLHMKEGTVAYVG 546
                 6789*******98876543479**9999988899******************99999**998777762233444443.....35555554223330033344566677766662225566666655555566666777777777.5577899***************9999999999999998678899888999998888999999***555666677789999999887665 PP

>> TIGR03258  PhnT: 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.2   0.0     1e-07   6.5e-06      22     197 ..      58     234 ..      46     241 .. 0.81
   2 !   27.2   1.8   6.3e-09   3.9e-07       8     223 ..     319     547 ..     314     558 .. 0.74

  Alignments for each domain:
  == domain 1    score: 23.2 bits;  conditional E-value: 1e-07
   TIGR03258  22 vvlddlsleieaGellallGksGsGkttllravaGfvkadGGrllvadrdlthlppykrnlallvqnyalfphlkveenvafGlr.a.rkqskaliaervadalklvqlsdaaarlp.aqlsGGqqqrvalaralvvrpdvllldeplsaldaqlrasvveelkalhrelpeltvlyvt 197
                   l d+s+ +  G    llG  G+Gk+tl+ ++ G    +    +v +r   h       +all  n++      v +nv +      r  ++  +        +lvql ++ +++  + +s Gq++rv +   l+   +vlllde  + ld   r+++ + l+   +e    t+   t
  MMETSP1137-20121227|7645_1  58 LQLRDVSMALPRGARCMLLGANGAGKSTLMSVIGGRHLVEEESAMVLGRPAFHDTSLASRVALLTGNWTHTVS-FVGHNVPYQAMeVsRLIASHSVGVDPERVRRLVQLLEVDEKWNlTTVSDGQRRRVQILCKLIKPCEVLLLDEITTDLDLLARQDLLQFLREESEERGVCTIY-CT 234
                 56899******************************9999998999999*******************986544.57889987533121333444444444556788999988888763679************999999*****************99998888777776655554.45 PP

  == domain 2    score: 27.2 bits;  conditional E-value: 6.3e-09
   TIGR03258   8 Gvvleslrvayga..rvvlddlsleieaGellallGksGsGkttllravaGf.vkadG.....Grllvadrdlthlp.....pykrnlallvqn...yalfphlkveenvafGlrarkqskaliaervadalklvqlsdaaarlpaqlsGGqqqrvalaralvvrpdvllldeplsaldaqlrasvveelkalhrelpeltvlyvthdrdealvladkillmkeGslialGe 223
                  + +++l+  y +   + l+ +s+e+e G    l+G  G+Gkttll+++ G  + + G     G  +  d++l  l       + r++a + +     a f    +       l    +s+a +++r a  + l++l d+  r  +++s Gq++r  l   l    ++lllde  + ld   r+++ + l+    +l   tv+y th  d       ++l mkeG+++  G 
  MMETSP1137-20121227|7645_1 319 AIAVHDLSWGYTGakSAALHSVSFELERGVRCLLVGANGAGKTTLLKLLGGKhMLPRGtvdvlGYSAFHDTELNTLTsllsgDWTRQVACVGNGvpfQADFSMGFMVGSFVEALVRDGMSEAVVEQRKARLVELLDL-DMEWR-LHKVSDGQRRRAQLFLKLLRPSQLLLLDEVTTDLDVLSRQALLQFLR-EESDLRGTTVVYSTHIFDGLDDWPTHLLHMKEGTVAYVGP 547
                 5778888888876224689*******************************961455555555555666777765543111225778888775441113445444444444445666778888888888866666655.44444.499***********999987788999*************99988775.5789***********999988999999*******998885 PP

>> TIGR00958  3a01208: antigen peptide transporter 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.4   0.1   2.8e-08   1.7e-06     497     670 ..      60     231 ..      53     237 .. 0.79
   2 !    9.2   0.1    0.0011      0.07     484     527 ..     325     367 ..     312     381 .. 0.83
   3 !   14.7   0.0   2.3e-05    0.0014     617     675 ..     463     525 ..     436     562 .. 0.76

  Alignments for each domain:
  == domain 1    score: 24.4 bits;  conditional E-value: 2.8e-08
   TIGR00958 497 lkdLtftlepGevvalVGPsGsGKStvaallenlYqPtgGqvllDgkplkeydhkylhrkvalVgqEPvlfsgsvreNiaYGltktedeevtaaakaanahdFiselekgydtevgekGs..qlsgGqkqriAiARALvrkPrvLiLDeAtSALDa.eveqllqe.sksaksrtvlli 670
                 l+d ++ l  G    l G +G GKSt ++++      ++ + ++ g+p   +   +l ++val           v +N+ Y    +e  ++ a+       + +  l +    ev+ek +   +s Gq+ r+ i   L++   vL+LDe t  LD  + + llq   +++++r v  i
  MMETSP1137-20121227|7645_1  60 LRDVSMALPRGARCMLLGANGAGKSTLMSVIGGRHLVEEESAMVLGRP--AFHDTSLASRVALLTGNWTHTVSFVGHNVPYQ--AMEVSRLIASHSVGVDPERVRRLVQLL--EVDEKWNltTVSDGQRRRVQILCKLIKPCEVLLLDEITTDLDLlARQDLLQFlREESEERGVCTI 231
                 7899999999999*****************975555555556666887..57889999****99998888888899999994..555566666666666667888888876..5677665116899*****************************97778888884455677777665 PP

  == domain 2    score: 9.2 bits;  conditional E-value: 0.0011
   TIGR00958 484 VsFsYPsrpdkpvlkdLtftlepGevvalVGPsGsGKStvaall 527
                  s+ Y + ++   l+  +f le G    lVG +G GK t   ll
  MMETSP1137-20121227|7645_1 325 LSWGY-TGAKSAALHSVSFELERGVRCLLVGANGAGKTTLLKLL 367
                 55555.3456677999************************9998 PP

  == domain 3    score: 14.7 bits;  conditional E-value: 2.3e-05
   TIGR00958 617 qlsgGqkqriAiARALvrkPrvLiLDeAtSALDa.eveqllqe...sksaksrtvlliahrLs 675
                  +s Gq+ r  +   L+r  ++L+LDe t  LD+   ++llq        ++ tv+  +h   
  MMETSP1137-20121227|7645_1 463 KVSDGQRRRAQLFLKLLRPSQLLLLDEVTTDLDVlSRQALLQFlreESDLRGTTVVYSTHIFD 525
                 5799******************************53344445432244455678877777655 PP

>> TIGR03415  ABC_choXWV_ATP: choline ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.0   0.2   2.4e-07   1.5e-05      35     247 ..      55     259 ..      42     273 .. 0.83
   2 !   28.7   2.0   2.2e-09   1.4e-07      38     243 ..     335     542 ..     328     553 .. 0.78

  Alignments for each domain:
  == domain 1    score: 22.0 bits;  conditional E-value: 2.4e-07
   TIGR03415  35 GlvlgvadasldveeGeilvlmGlsGsGkssllravnglnpvsrGkvlvkdedkevdvakcdeat.lrklrtkrvsmvfqkfallPWrtveenvafGlelsGvakaerrkrveeqlelvglaeWadkkvgelsGGmqqrvGlarafateadillmdePfsaldPliraklqdellelqkklkktivfvshdldealklGnriaimegGrivqlg 247
                    l+ +d+s+ + +G  ++l+G  G+Gks+l+  + g   v   + +v       d   +++ + l    t++vs v  +   +P++++e    +     Gv  + +r+ v + le+   ++W+      +s G ++rv +   +   +++ll+de  + ld l r+ l   l e  ++     ++ +h +d      ++ia + gG +v + 
  MMETSP1137-20121227|7645_1  55 AYKLQLRDVSMALPRGARCMLLGANGAGKSTLMSVIGGRHLVEEESAMVLGRPAFHDTSLASRVAlLTGNWTHTVSFVGHN---VPYQAMEVSRLIASHSVGVDPERVRRLV-QLLEVD--EKWNL---TTVSDGQRRRVQILCKLIKPCEVLLLDEITTDLDLLARQDLLQFLREESEERGVCTIYCTHIFDGLDGWPTHIAYLSGGEMVFCK 259
                 55678899********************************************999999888776615667899***99876...7999887666666666676554444333.344432..45764...56799***********************************999999888888889999999999999999999999999999775 PP

  == domain 2    score: 28.7 bits;  conditional E-value: 2.2e-09
   TIGR03415  38 lgvadasldveeGeilvlmGlsGsGkssllravnglnpvsrGkvlvkdedkevdvakcd.eatlrklrtkrvsmvfqkfallPWrtveenvaf...GlelsGvakaerrkrveeqlelvgla.eWadkkvgelsGGmqqrvGlarafateadillmdePfsaldPliraklqdellelqkklk.ktivfvshdldealklGnriaimegGri 243
                  + + +s+++e+G  ++l+G  G+Gk++ll+ + g   + rG v v   +   d      ++ l    t++v+ v     +    ++   v+     l  +G+++a + +r ++ +el++l+ eW+    + +s G ++r  l   +   +++ll+de  + ld l r+ l   l +  + l+  t+v+ +h +d      +++  m++G +
  MMETSP1137-20121227|7645_1 335 AALHSVSFELERGVRCLLVGANGAGKTTLLKLLGGKHMLPRGTVDVLGYSAFHDTELNTlTSLLSGDWTRQVACVGNGVPFQADFSMGFMVGSfveALVRDGMSEAVVEQRKARLVELLDLDmEWR---LHKVSDGQRRRAQLFLKLLRPSQLLLLDEVTTDLDVLSRQALLQFL-REESDLRgTTVVYSTHIFDGLDDWPTHLLHMKEGTV 542
                 56799*****************************************9888777765443034445556788888855554444444444444301146679*******************974686...566799***********************************98755.556666626788888988876667777777777766 PP

>> TIGR01192  chvA: glucan exporter ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.0      0.15         9     349     381 ..      58      90 ..      38     104 .. 0.87
   2 !    8.0   0.0    0.0033       0.2     471     504 ..     176     209 ..     159     225 .. 0.90
   3 !   25.4   0.0   1.8e-08   1.1e-06     334     506 ..     319     498 ..     306     578 .. 0.79

  Alignments for each domain:
  == domain 1    score: 2.6 bits;  conditional E-value: 0.15
   TIGR01192 349 qgvrdvsfeakagqtvaivgptgagkttlinll 381
                   +rdvs+    g    ++g  gagk+tl+ ++
  MMETSP1137-20121227|7645_1  58 LQLRDVSMALPRGARCMLLGANGAGKSTLMSVI 90 
                 56799************************9876 PP

  == domain 2    score: 8.0 bits;  conditional E-value: 0.0033
   TIGR01192 471 rlsggerqrlaiarailknapilvldeatsaldv 504
                  +s g+r+r+ i   ++k   +l+lde t+ ld+
  MMETSP1137-20121227|7645_1 176 TVSDGQRRRVQILCKLIKPCEVLLLDEITTDLDL 209
                 5899****************************97 PP

  == domain 3    score: 25.4 bits;  conditional E-value: 1.8e-08
   TIGR01192 334 avefrdisfefanss.qgvrdvsfeakagqtvaivgptgagkttlinllqrvydpksgqilidgvdi.atvtreslrksiat..vfqdagllnr.sirenirlgredat.deevveaakaaaasdfiekrlkg.ydtlvgergnrlsggerqrlaiarailknapilvldeatsaldvet 506
                 a+  +d+s++++ ++   ++ vsfe   g    +vg  gagkttl+ ll   +    g + + g       + ++l   ++     q a + n    + + ++g    +  e +v    + a  +  + rl +  d  +  r  ++s g+r+r  +   +l+ + +l+lde t+ ldv +
  MMETSP1137-20121227|7645_1 319 AIAVHDLSWGYTGAKsAALHSVSFELERGVRCLLVGANGAGKTTLLKLLGGKHMLPRGTVDVLGYSAfHDTELNTLTSLLSGdwTRQVACVGNGvPFQADFSMGFMVGSfVEALVRDGMSEAVVEQRKARLVElLDLDMEWRLHKVSDGQRRRAQLFLKLLRPSQLLLLDEVTTDLDVLS 498
                 68899*****9987615789*****************************9999988888887776431334444555444431133555555541467788888765551455666666666666666666551456677799**********************************965 PP

>> TIGR01257  rim_protein: rim ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.9   0.0     3e-05    0.0018     960    1138 ..      74     255 ..      60     265 .. 0.67
   2 !   22.2   0.0   4.8e-08     3e-06    1939    2160 ..     321     554 ..     314     567 .. 0.74

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 3e-05
   TIGR01257  960 aflghngagktttlsiltg..llpptsgtvlvggkdietnldavrqslgmcpqhnilfhhltvaehilfyaqlkg.rsweeaqlemeamledtglhhkrneeaqdlsgglqrklsvaiafvgdakvvvldeptsgvdpysrrsiwdlllkyrsgr..tiimsthhmdeadllgdriaiisqgrl 1138
                   +lg ngagk+t +s++ g  l+   s  vl      +t+l +    l     h + f    v  + +  ++l   +s       +  +++   +  k n     +s g +r++ +   ++  + v++lde t+ +d  +r+ + ++l      r    i  th +d  d    +ia +s g +
  MMETSP1137-20121227|7645_1   74 MLLGANGAGKSTLMSVIGGrhLVEEESAMVLGRPAFHDTSLASRVALLTGNWTHTVSFVGHNVPYQAMEVSRLIAsHSVGVDPERVRRLVQLLEVDEKWN--LTTVSDGQRRRVQILCKLIKPCEVLLLDEITTDLDLLARQDLLQFLREESEERgvCTIYCTHIFDGLDGWPTHIAYLSGGEM 255 
                  4688888888888888888333444444444444445777776666666677888888776776666655555440444444444455555555555555..4568888888888888888888888888888888888888888888776554411557888888888888888888888764 PP

  == domain 2    score: 22.2 bits;  conditional E-value: 4.8e-08
   TIGR01257 1939 rlneltkvysgtsspavdrlcvgvrpgecfgllgvngagktttfkmltgdttvtsgdatvagksil..tnisdvhq..nmgycpqfdaidd.......lltg.rehlylyarlrgvpae.eiekvanwsikslglslyadrlagtysggnkrklstaialigcpplvlldepttgmdpqarrmlwntivsi.iregravvltshsmeecealctrlaimvkgafqclgtiqhlksk 2160
                   +++l+  y+g+ s a+  +   +  g    l+g ngagktt +k+l g   +  g   v g s +  t++  +    +  +  q+ ++ +       +  g     ++ a +r   +e  +e+     ++ l l +  +      s g++r+    + l+    l+llde tt +d  +r+ l + +       g +vv ++h ++  +   t+l  m  g++  +g +q  ++ 
  MMETSP1137-20121227|7645_1  321 AVHDLSWGYTGAKSAALHSVSFELERGVRCLLVGANGAGKTTLLKLLGGKHMLPRGTVDVLGYSAFhdTELNTLTSllSGDWTRQVACVGNgvpfqadFSMGfMVGSFVEALVRDGMSEaVVEQRKARLVELLDLDM--EWRLHKVSDGQRRRAQLFLKLLRPSQLLLLDEVTTDLDVLSRQALLQFLREEsDLRGTTVVYSTHIFDGLDDWPTHLLHMKEGTVAYVGPLQLARKA 554 
                  57899999****************9999889*******************************997522333333321122344555544431000000333312345677777755555156666666777776665..4455678999********************************9998877543133578999****************************99976654 PP

>> TIGR01194  cyc_pep_trnsptr: cyclic peptide transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0   8.5e-06   0.00053     349     510 ..      52     217 ..      40     239 .. 0.72
   2 !   12.4   0.0   0.00015    0.0093     351     398 ..     331     378 ..     319     399 .. 0.81
   3 ?    5.8   0.1     0.015      0.93     469     528 ..     463     522 ..     445     543 .. 0.87

  Alignments for each domain:
  == domain 1    score: 16.5 bits;  conditional E-value: 8.5e-06
   TIGR01194 349 vessegfalGpidlriasGelvyivGenGcGkstliklllGlyipqeGellldGeavsdesrddyr.dlfsavfadyylfddlvqpdekkqasldqatty..lsrleledkvkve..dlnystttdlstGqrkrlalvnayleerpvllldewaadqdpafkrvfye 510
                 ++++  ++l  + + + +G    ++G nG Gkstl+ ++ G +  +e   ++ G +   ++    r  l++  ++    f     p +  + s   a +   ++   +   v++   d ++   t +s Gqr+r+ +++  ++   vlllde ++d d   ++ + +
  MMETSP1137-20121227|7645_1  52 TQAAYKLQLRDVSMALPRGARCMLLGANGAGKSTLMSVIGGRHLVEEESAMVLGRPAFHDTSLASRvALLTGNWTHTVSFVGHNVPYQAMEVSRLIASHSvgVDPERVRRLVQLLevDEKWN-LTTVSDGQRRRVQILCKLIKPCEVLLLDEITTDLDLLARQDLLQ 217
                 5666677888889999999999********************99988888888888777766555526777777766666555555555555554444431134445555566541145566.6789*****************************99766665555 PP

  == domain 2    score: 12.4 bits;  conditional E-value: 0.00015
   TIGR01194 351 ssegfalGpidlriasGelvyivGenGcGkstliklllGlyipqeGel 398
                 ++++ al  + + +++G    +vG nG Gk+tl+kll G ++   G +
  MMETSP1137-20121227|7645_1 331 GAKSAALHSVSFELERGVRCLLVGANGAGKTTLLKLLGGKHMLPRGTV 378
                 55666788899999999999*****************99887666665 PP

  == domain 3    score: 5.8 bits;  conditional E-value: 0.015
   TIGR01194 469 dlstGqrkrlalvnayleerpvllldewaadqdpafkrvfyeellpdlkrrGktilvish 528
                 ++s Gqr+r  l    l    +lllde ++d d   ++ + + l  +   rG t++  +h
  MMETSP1137-20121227|7645_1 463 KVSDGQRRRAQLFLKLLRPSQLLLLDEVTTDLDVLSRQALLQFLREESDLRGTTVVYSTH 522
                 689*******************************99999999999999999999998888 PP

>> TIGR00956  3a01205: pleiotropic drug resistance family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.2   1.1e-06   6.9e-05     786     960 ..      67     232 ..      52     241 .. 0.81
   2 !    7.5   0.1    0.0022      0.13     779     812 ..     337     370 ..     323     380 .. 0.80
   3 !   11.9   0.0   0.00011    0.0066     906     988 ..     468     548 ..     463     555 .. 0.82

  Alignments for each domain:
  == domain 1    score: 18.4 bits;  conditional E-value: 1.1e-06
   TIGR00956 786 vkPGkltALmGasGAGkttLlnvLaeRvttGvitegdrlvngrk..ldssFqRsiGYvqqqDlHletstvreaLrfsAy..lRqpkevskkekneyveevikllelesyadAvvGvpGeGLnveqRkrltigveLvAkPklllFlDePtsGLDsqtawsivkllrklada.GqailCtiH 960
                 +  G    L+Ga GAGk tL+ v+ +R    +++e+  +v gr+   d+s + ++     +  H   s v   + + A+   R  ++ s     e v ++++lle+++  +         ++  qR+r+ i   L+ kP  +l lDe t  LD  +   ++++lr+ +++ G   +Cti+
  MMETSP1137-20121227|7645_1  67 LPRGARCMLLGANGAGKSTLMSVIGGR---HLVEEESAMVLGRPafHDTSLASRVALLTGNWTHTV-SFVGHNVPYQAMevSRLIASHSVGVDPERVRRLVQLLEVDEKWNLTT------VSDGQRRRVQILCKLI-KPCEVLLLDEITTDLDLLARQDLLQFLREESEErG---VCTIY 232
                 55577788*******************...68999******9984469**************9975.5688888888853357777777777888999*******998776433......3445**********98.9999************************9887513...45554 PP

  == domain 2    score: 7.5 bits;  conditional E-value: 0.0022
   TIGR00956 779 LdevdGwvkPGkltALmGasGAGkttLlnvLaeR 812
                 L+ v+  ++ G+   L+Ga GAGkttLl  L ++
  MMETSP1137-20121227|7645_1 337 LHSVSFELERGVRCLLVGANGAGKTTLLKLLGGK 370
                 5666666667778889*************99876 PP

  == domain 3    score: 11.9 bits;  conditional E-value: 0.00011
   TIGR00956 906 qRkrltigveLvAkPklllFlDePtsGLDsqtawsivkllrklad.aGqailCtiHqPsailleeFDrLLllqkGGktvYfGdl 988
                 qR+r+ +   L  +P  ll lDe t  LD  +  +++++lr+ +d  G +++   H    + l+++   Ll  k G ++Y+G+l
  MMETSP1137-20121227|7645_1 468 QRRRAQLFLKLL-RPSQLLLLDEVTTDLDVLSRQALLQFLREESDlRGTTVVYSTHI--FDGLDDWPTHLLHMKEGTVAYVGPL 548
                 899999988886.899****************************9669999987774..3345555556666677799****98 PP

>> TIGR01271  CFTR_protein: cystic fibrosis transmembrane conductor regulator (CFTR)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.3   0.0    0.0012     0.072    1234    1265 ..      59      90 ..      46     125 .. 0.88
   2 ?    3.2   0.0      0.04       2.5     548     588 ..     176     216 ..     153     229 .. 0.93
   3 !   18.8   0.3   7.5e-07   4.7e-05    1210    1412 ..     311     524 ..     300     549 .. 0.62

  Alignments for each domain:
  == domain 1    score: 8.3 bits;  conditional E-value: 0.0012
   TIGR01271 1234 vlqdlsfsveagqrvgllgrtgsgkstllsal 1265
                   l+d+s+++  g r  llg  g+gkstl+s +
  MMETSP1137-20121227|7645_1   59 QLRDVSMALPRGARCMLLGANGAGKSTLMSVI 90  
                  5899*************************986 PP

  == domain 2    score: 3.2 bits;  conditional E-value: 0.04
   TIGR01271 548 tlsggqrarislaravykdadlylldspfsyldvvtekeif 588
                 t+s gqr r+ +   + k +++ lld   + ld+++ ++++
  MMETSP1137-20121227|7645_1 176 TVSDGQRRRVQILCKLIKPCEVLLLDEITTDLDLLARQDLL 216
                 89*********************************999875 PP

  == domain 3    score: 18.8 bits;  conditional E-value: 7.5e-07
   TIGR01271 1210 kiwpsgg.qmtvkdltakyteagravlqdlsfsveagqrvgllgrtgsgkstllsall.rllstegeiqidgvs.wnsvtlqkwrkaf.gvipqkvfilsgtfrknldpyeqysdeeiwkvaeevgl.ksvieq....fpdkldfvlvdggyvlsnghkqlmclarsilskakillldepsafldpvtlqiirktlkqa..fsnctvilsehrv 1412
                  ++ p+gg  + v+dl+  yt a  a l+ +sf +e g r  l+g  g+gk+tll  l  + +   g +++ g s ++   l++    + g   ++v  +      + d    +    +       g+  +v+eq    + + ld+ ++     +s+g ++   l   +l  +++lllde ++ ld ++ q + + l++   +   tv+ s h  
  MMETSP1137-20121227|7645_1  311 DVVPKGGpAIAVHDLSWGYTGAKSAALHSVSFELERGVRCLLVGANGAGKTTLLKLLGgKHMLPRGTVDVLGYSaFHDTELNTLTSLLsGDWTRQVACVGNGVPFQADFSMGFMVGSFVEALVRDGMsEAVVEQrkarLVELLDLDMEWRLHKVSDGQRRRAQLFLKLLRPSQLLLLDEVTTDLDVLSRQALLQFLREEsdLRGTTVVYSTHIF 524 
                  56788774589*******************************************8774244556677777776534444454444332133444444433333333333333333332222222222134444411113344455555555666777777777777777777777777777777777777777766653124556666666655 PP

>> TIGR00957  MRP_assoc_pro: multi drug resistance-associated protein (MRP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   0.0     0.016         1     634     684 ..      38      90 ..       6     109 .. 0.72
   2 ?    4.7   0.1     0.014      0.84    1422    1476 ..     177     231 ..     161     255 .. 0.85
   3 !   10.1   0.0   0.00032      0.02     631     702 ..     314     385 ..     305     390 .. 0.85
   4 !    7.9   0.0    0.0015     0.091    1421    1501 ..     463     546 ..     443     568 .. 0.77

  Alignments for each domain:
  == domain 1    score: 4.4 bits;  conditional E-value: 0.016
   TIGR00957 634 gnsitvknatftwardep..ptlngltlsipegalvavvgqvgcgkssllsal 684
                 g si +  a      +      l+ +++ +p+ga   ++g  g gks+l+s +
  MMETSP1137-20121227|7645_1  38 GCSIDMPRAQHVPGTQAAykLQLRDVSMALPRGARCMLLGANGAGKSTLMSVI 90 
                 555555555554433333003577899999*****************999976 PP

  == domain 2    score: 4.7 bits;  conditional E-value: 0.014
   TIGR00957 1422 lsvgqrqlvclarallrktkilvldeataavdlet.dnliqstirtqfedctvlti 1476
                  +s gqr+ v +   l++ + +l+lde t+ +dl + ++l+q  +r + e+  v ti
  MMETSP1137-20121227|7645_1  177 VSDGQRRRVQILCKLIKPCEVLLLDEITTDLDLLArQDLLQ-FLREESEERGVCTI 231 
                  688*****************************876145555.67888888777776 PP

  == domain 3    score: 10.1 bits;  conditional E-value: 0.00032
   TIGR00957 631 dgegnsitvknatftwardepptlngltlsipegalvavvgqvgcgkssllsallaemdkvegkvalkgsva 702
                 + +g +i+v++ ++ ++  +  +l+++++++ +g    +vg  g gk++ll  l ++     g v + g  a
  MMETSP1137-20121227|7645_1 314 PKGGPAIAVHDLSWGYTGAKSAALHSVSFELERGVRCLLVGANGAGKTTLLKLLGGKHMLPRGTVDVLGYSA 385
                 44589**********************************************987776666667777766555 PP

  == domain 4    score: 7.9 bits;  conditional E-value: 0.0015
   TIGR00957 1421 nlsvgqrqlvclarallrktkilvldeataavdletdnliqstir..tqfedctvltiahrlntimdy.trvlvldkgevaefd 1501
                  ++s gqr+   l   llr +++l+lde t+ +d+ + + +   +r  +++   tv+  +h ++ + d+ t +l +  g va ++
  MMETSP1137-20121227|7645_1  463 KVSDGQRRRAQLFLKLLRPSQLLLLDEVTTDLDVLSRQALLQFLReeSDLRGTTVVYSTHIFDGLDDWpTHLLHMKEGTVAYVG 546 
                  6899*****************************876665555666124566789999999999999985677777778877554 PP

>> TIGR00954  3a01203: peroxysomal long chain fatty acyl transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.4   0.0   0.00026     0.016     467     501 ..      58      92 ..      20     100 .. 0.87
   2 !   13.4   0.0   6.7e-05    0.0042     469     501 ..     337     369 ..     330     379 .. 0.90

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 0.00026
   TIGR00954 467 vlieeLsfevksGnhlLiiGPnGcGKsslfRilge 501
                   + ++s+ ++ G   +++G nG GKs l+ ++g+
  MMETSP1137-20121227|7645_1  58 LQLRDVSMALPRGARCMLLGANGAGKSTLMSVIGG 92 
                 55678999*************************97 PP

  == domain 2    score: 13.4 bits;  conditional E-value: 6.7e-05
   TIGR00954 469 ieeLsfevksGnhlLiiGPnGcGKsslfRilge 501
                 ++++sfe++ G   L++G nG GK  l ++lg+
  MMETSP1137-20121227|7645_1 337 LHSVSFELERGVRCLLVGANGAGKTTLLKLLGG 369
                 5789***************************97 PP

>> TIGR00231  small_GTP: small GTP-binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.8   0.0     0.001     0.065       4      33 ..      71     100 ..      69     108 .. 0.88
   2 !   12.0   0.1   0.00045     0.028       3      27 ..     347     371 ..     345     379 .. 0.87

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 0.001
   TIGR00231   4 ikivivGhvdvGKstLlnsllknkisites 33 
                 +++ ++G  ++GKstL++ + +++ +++es
  MMETSP1137-20121227|7645_1  71 ARCMLLGANGAGKSTLMSVIGGRHLVEEES 100
                 57899******************9888876 PP

  == domain 2    score: 12.0 bits;  conditional E-value: 0.00045
   TIGR00231   3 eikivivGhvdvGKstLlnsllknk 27 
                  +++++vG  ++GK+tLl+ l +++
  MMETSP1137-20121227|7645_1 347 GVRCLLVGANGAGKTTLLKLLGGKH 371
                 5789**************9998877 PP

>> TIGR00611  recf: DNA replication and repair protein RecF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.0      0.56        35      26      43 ..      73      90 ..      59      95 .. 0.77
   2 !    7.4   0.1    0.0071      0.44     304     346 ..     196     238 ..     155     252 .. 0.85
   3 !    7.8   0.0    0.0056      0.35      15      41 ..     338     365 ..     334     370 .. 0.87
   4 !    7.6   0.2    0.0065       0.4     304     344 ..     483     523 ..     470     542 .. 0.73

  Alignments for each domain:
  == domain 1    score: 1.2 bits;  conditional E-value: 0.56
   TIGR00611 26 nvlvGeNgqGKtnlleai 43
                 +l+G Ng GK  l+  i
  MMETSP1137-20121227|7645_1 73 CMLLGANGAGKSTLMSVI 90
                489********9998655 PP

  == domain 2    score: 7.4 bits;  conditional E-value: 0.0071
   TIGR00611 304 pilllDDvaseLDeqrreaLaelleekgeqvfvtaislddlke 346
                  +lllD +   LD   r++L++ l+e+ e   v +i   ++ +
  MMETSP1137-20121227|7645_1 196 EVLLLDEITTDLDLLARQDLLQFLREESEERGVCTIYCTHIFD 238
                 39************************99999998888877765 PP

  == domain 3    score: 7.8 bits;  conditional E-value: 0.0056
   TIGR00611  15 eevdlelspgvn.vlvGeNgqGKtnlle 41 
                 ++v  el+ gv  +lvG Ng GKt ll+
  MMETSP1137-20121227|7645_1 338 HSVSFELERGVRcLLVGANGAGKTTLLK 365
                 578889999998799**********996 PP

  == domain 4    score: 7.6 bits;  conditional E-value: 0.0065
   TIGR00611 304 pilllDDvaseLDeqrreaLaelleekgeqvfvtaislddl 344
                  +lllD v   LD   r+aL++ l+e+     +t + + ++
  MMETSP1137-20121227|7645_1 483 QLLLLDEVTTDLDVLSRQALLQFLREESDLRGTTVVYSTHI 523
                 59**********************99955444454555555 PP

>> TIGR02528  EutP: ethanolamine utilization protein, EutP
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   0.0      0.13       8.1       2      24 ..      72      94 ..      71     103 .. 0.86
   2 !   10.4   0.0     0.002      0.12       2      33 ..     349     380 ..     348     391 .. 0.84

  Alignments for each domain:
  == domain 1    score: 4.5 bits;  conditional E-value: 0.13
   TIGR02528  2 rimliGsvgcGkttLtqaLkgee 24
                r ml+G  g+Gk tL+  + g +
  MMETSP1137-20121227|7645_1 72 RCMLLGANGAGKSTLMSVIGGRH 94
                88*************98877765 PP

  == domain 2    score: 10.4 bits;  conditional E-value: 0.002
   TIGR02528   2 rimliGsvgcGkttLtqaLkgeeikykktqav 33 
                 r +l+G  g+GkttL + L g++++ + t  v
  MMETSP1137-20121227|7645_1 349 RCLLVGANGAGKTTLLKLLGGKHMLPRGTVDV 380
                 6789******************9998888655 PP

>> TIGR03819  heli_sec_ATPase: helicase/secretion neighborhood ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   0.0     0.061       3.8     179     201 ..      71      93 ..      42     124 .. 0.81
   2 !    9.7   0.2    0.0015     0.091     177     198 ..     346     367 ..     330     375 .. 0.83

  Alignments for each domain:
  == domain 1    score: 4.4 bits;  conditional E-value: 0.061
   TIGR03819 179 lallvsGgtGsGkttLLsalLal 201
                 + +++ G+ G+Gk tL+s + ++
  MMETSP1137-20121227|7645_1  71 ARCMLLGANGAGKSTLMSVIGGR 93 
                 567889***********988664 PP

  == domain 2    score: 9.7 bits;  conditional E-value: 0.0015
   TIGR03819 177 arlallvsGgtGsGkttLLsal 198
                 + + +l++G+ G+GkttLL  l
  MMETSP1137-20121227|7645_1 346 RGVRCLLVGANGAGKTTLLKLL 367
                 55679**************865 PP

>> TIGR00630  uvra: excinuclease ABC subunit A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   0.0    0.0073      0.45     617     651 ..      54      88 ..      29     101 .. 0.75
   2 ?   -0.8   0.0       1.1        68     825     876 ..     173     221 ..     165     238 .. 0.81
   3 ?   -0.1   0.0      0.65        40       6      38 ..     331     363 ..     328     367 .. 0.60
   4 ?    0.5   0.1      0.43        27     828     891 ..     463     524 ..     449     529 .. 0.81

  Alignments for each domain:
  == domain 1    score: 6.4 bits;  conditional E-value: 0.0073
   TIGR00630 617 gakennlkdidvsiplglltvitGvsgsGkstLin 651
                  a +  l+d+++ +p g   ++ G  g+GkstL+ 
  MMETSP1137-20121227|7645_1  54 AAYKLQLRDVSMALPRGARCMLLGANGAGKSTLMS 88 
                 45566677777777777777777777777777765 PP

  == domain 2    score: -0.8 bits;  conditional E-value: 1.1
   TIGR00630 825 pattLsGGeaqrvkLakeLskrstgktlyilDePttGLhfdDikkLlevlqr 876
                 + tt+s G  +rv++  +L k      + +lDe tt L +   + Ll+ l++
  MMETSP1137-20121227|7645_1 173 NLTTVSDGQRRRVQILCKLIKPC---EVLLLDEITTDLDLLARQDLLQFLRE 221
                 57999********9998888876...4789********99999999988865 PP

  == domain 3    score: -0.1 bits;  conditional E-value: 0.65
   TIGR00630   6 GarehnLknidvelprdklvvitGlsGsGkssL 38 
                 Ga+   L++++ el r    ++ G  G+Gk +L
  MMETSP1137-20121227|7645_1 331 GAKSAALHSVSFELERGVRCLLVGANGAGKTTL 363
                 566666666666666666666666666666655 PP

  == domain 4    score: 0.5 bits;  conditional E-value: 0.43
   TIGR00630 828 tLsGGeaqrvkLakeLskrstgktlyilDePttGLhfdDikkLlevlqrlvd.kGntvvviehnl 891
                  +s G  +r +L  +L + s    l +lDe tt L +   + Ll+ l++  d +G tvv   h +
  MMETSP1137-20121227|7645_1 463 KVSDGQRRRAQLFLKLLRPS---QLLLLDEVTTDLDVLSRQALLQFLREESDlRGTTVVYSTHIF 524
                 56778888888888887776...599*********************988774688888777765 PP

>> TIGR00064  ftsY: signal recognition particle-docking protein FtsY
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.0      0.22        13      82     101 ..      73      92 ..      52     119 .. 0.78
   2 ?    7.2   0.0    0.0089      0.55      81      96 ..     349     364 ..     331     375 .. 0.81

  Alignments for each domain:
  == domain 1    score: 2.7 bits;  conditional E-value: 0.22
   TIGR00064  82 illvGvNGvGKTttiaKlak 101
                 ++l G NG+GK t ++ +  
  MMETSP1137-20121227|7645_1  73 CMLLGANGAGKSTLMSVIGG 92 
                 699**********8887754 PP

  == domain 2    score: 7.2 bits;  conditional E-value: 0.0089
   TIGR00064  81 villvGvNGvGKTtti 96 
                  +llvG NG+GKTt +
  MMETSP1137-20121227|7645_1 349 RCLLVGANGAGKTTLL 364
                 579**********965 PP

>> TIGR03185  DNA_S_dndD: DNA sulfur modification protein DndD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.0      0.19        12      32      47 ..      75      89 ..      61      91 .. 0.79
   2 ?    7.3   0.1    0.0047      0.29      32      46 ..     351     365 ..     329     368 .. 0.83

  Alignments for each domain:
  == domain 1    score: 2.0 bits;  conditional E-value: 0.19
   TIGR03185 32 LlgglNGaGKTTlLda 47
                Ll g NGaGK Tl+  
  MMETSP1137-20121227|7645_1 75 LL-GANGAGKSTLMSV 89
                44.66********976 PP

  == domain 2    score: 7.3 bits;  conditional E-value: 0.0047
   TIGR03185  32 LlgglNGaGKTTlLd 46 
                 Ll g NGaGKTTlL+
  MMETSP1137-20121227|7645_1 351 LLVGANGAGKTTLLK 365
                 78899********96 PP

>> TIGR02322  phosphon_PhnN: phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   0.0     0.055       3.4       4      22 ..      73      91 ..      70     121 .. 0.76
   2 ?    5.2   0.0     0.054       3.4       4      20 ..     350     366 ..     347     375 .. 0.86

  Alignments for each domain:
  == domain 1    score: 5.2 bits;  conditional E-value: 0.055
   TIGR02322  4 ilvvGpsGaGKDtlldlar 22
                 +++G+ GaGK tl+ +  
  MMETSP1137-20121227|7645_1 73 CMLLGANGAGKSTLMSVIG 91
                5799***********9864 PP

  == domain 2    score: 5.2 bits;  conditional E-value: 0.054
   TIGR02322   4 ilvvGpsGaGKDtlldl 20 
                  l+vG+ GaGK tll+l
  MMETSP1137-20121227|7645_1 350 CLLVGANGAGKTTLLKL 366
                 579***********986 PP

>> TIGR01618  phage_P_loop: phage nucleotide-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.0      0.83        52      14      38 ..      72      96 ..      62     109 .. 0.84
   2 ?    7.8   0.0    0.0082      0.51      14      38 ..     349     373 ..     342     378 .. 0.87

  Alignments for each domain:
  == domain 1    score: 1.2 bits;  conditional E-value: 0.83
   TIGR01618 14 riliYgkpGlGktsvikyleGktlv 38
                r ++ g  G+Gk +++  + G+ lv
  MMETSP1137-20121227|7645_1 72 RCMLLGANGAGKSTLMSVIGGRHLV 96
                5688899**************9998 PP

  == domain 2    score: 7.8 bits;  conditional E-value: 0.0082
   TIGR01618  14 riliYgkpGlGktsvikyleGktlv 38 
                 r l+ g  G+Gkt+++k l Gk ++
  MMETSP1137-20121227|7645_1 349 RCLLVGANGAGKTTLLKLLGGKHML 373
                 56788999**************986 PP

>> TIGR00929  VirB4_CagE: type IV secretion/conjugal transfer ATPase, VirB4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   0.2     0.022       1.4     441     457 ..      74      90 ..      70      92 .. 0.90
   2 ?    5.2   0.2     0.017         1     441     457 ..     351     367 ..     349     371 .. 0.90

  Alignments for each domain:
  == domain 1    score: 4.8 bits;  conditional E-value: 0.022
   TIGR00929 441 lIfGptgsGKTvllnfl 457
                 +++G++g+GK++l++++
  MMETSP1137-20121227|7645_1  74 MLLGANGAGKSTLMSVI 90 
                 789***********976 PP

  == domain 2    score: 5.2 bits;  conditional E-value: 0.017
   TIGR00929 441 lIfGptgsGKTvllnfl 457
                 l++G++g+GKT+ll++l
  MMETSP1137-20121227|7645_1 351 LLVGANGAGKTTLLKLL 367
                 689***********987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (626 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       244  (0.0594832); expected 82.0 (0.02)
Passed bias filter:                      237  (0.0577767); expected 82.0 (0.02)
Passed Vit filter:                       109  (0.0265724); expected 4.1 (0.001)
Passed Fwd filter:                        66  (0.0160897); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              66  [number of targets reported over threshold]
# CPU time: 2.30u 0.20s 00:00:02.50 Elapsed: 00:00:01.70
# Mc/sec: 486.03
//
Query:       MMETSP1137-20121227|7646_1  [L=173]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00032   16.4   2.5    0.00038   16.1   1.7    1.0  1  TIGR02168 SMC_prok_B: chromosome segregation protein SMC
     0.0011   15.3   3.1     0.0013   15.1   2.1    1.0  1  TIGR03185 DNA_S_dndD: DNA sulfur modification protein DndD
     0.0035   12.9   6.0     0.0045   12.5   4.2    1.1  1  TIGR02169 SMC_prok_A: chromosome segregation protein SMC
     0.0062   12.9   2.2     0.0082   12.5   1.5    1.1  1  TIGR03319 YmdA_YtgF: conserved hypothetical protein YmdA/YtgF
  ------ inclusion threshold ------
       0.15    8.8   4.4       0.19    8.5   3.1    1.1  1  TIGR00414 serS: serine--tRNA ligase


Domain annotation for each model (and alignments):
>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   1.7   4.6e-07   0.00038     679     756 ..      81     156 ..      57     165 .. 0.40

  Alignments for each domain:
  == domain 1    score: 16.1 bits;  conditional E-value: 4.6e-07
   TIGR02168 679 keieeleeeieeleekiaelekelkelekeleeleeeleklrkeleelerklselkkelerlekeveqleerlaqlek 756
                 +e+++lee+i+++e ki+e ek+++e + + + ++   e++r  + e+ ++l++++++l+  e++ +  +++l++++ 
  MMETSP1137-20121227|7646_1  81 SEVSTLEERIQAIEGKISEVEKQIEECDANITIAT--SEQMRGYWIEKGKQLRRKEEQLRXKEEQLRDEKRQLREEKT 156
                 33333333333333333333333333333322222..23333333333333333322222222222222222221111 PP

>> TIGR03185  DNA_S_dndD: DNA sulfur modification protein DndD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   2.1   1.6e-06    0.0013     208     291 ..      80     161 ..      62     170 .. 0.71

  Alignments for each domain:
  == domain 1    score: 15.1 bits;  conditional E-value: 1.6e-06
   TIGR03185 208 eseiealeaelkeqeekievlaqeiaalrkeleeaerkleslekkfeseGgelaeereelerqqkeleaklkavraelrelaad 291
                  se+++le+++++ e ki+ ++++i++   +++ a    e+++    ++G +l  + e+l+ ++++l+ +++++r+e +el+++
  MMETSP1137-20121227|7646_1  80 GSEVSTLEERIQAIEGKISEVEKQIEECDANITIAT--SEQMRGYWIEKGKQLRRKEEQLRXKEEQLRDEKRQLREEKTELLKR 161
                 567777777777777777777777777777776554..4556667777777777777777777777777777777777777765 PP

>> TIGR02169  SMC_prok_A: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.5   4.2   5.5e-06    0.0045     422     493 ..      82     155 ..      70     165 .. 0.30

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 5.5e-06
   TIGR02169 422 elaelkaelerieekiaeleeeleelaeeikkaeqk..leqlkedlekaekelrklkeeleklekelselerel 493
                 e++ l++ +++ie ki e+e++ ee +++i  a+ +  +    e+ ++++++ ++l+ + e+l +e ++l++e 
  MMETSP1137-20121227|7646_1  82 EVSTLEERIQAIEGKISEVEKQIEECDANITIATSEqmRGYWIEKGKQLRRKEEQLRXKEEQLRDEKRQLREEK 155
                 22333333333333333333333333332222221100111112222222222222222222222222222111 PP

>> TIGR03319  YmdA_YtgF: conserved hypothetical protein YmdA/YtgF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.5   1.5     1e-05    0.0082      54     127 ..      87     158 ..      52     166 .. 0.45

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 1e-05
   TIGR03319  54 leakeevkklreelekelkerrkelqklekrlkqkeekldrkkeklekkeeelekkekeleekekeleekeeel 127
                  e  + ++ + +e+ek+++e  ++++ + +  + +   +++ k +l++kee+l+ ke++l++++++l+e+++el
  MMETSP1137-20121227|7646_1  87 EERIQAIEGKISEVEKQIEECDANITIATSE-QMRGYWIEKGK-QLRRKEEQLRXKEEQLRDEKRQLREEKTEL 158
                 3333333333344444444444444333222.22222222222.344444444444444444444444333333 PP

>> TIGR00414  serS: serine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   3.1   0.00023      0.19      32     101 ..      83     153 ..      66     163 .. 0.54

  Alignments for each domain:
  == domain 1    score: 8.5 bits;  conditional E-value: 0.00023
   TIGR00414  32 lselddklkkllskieelqkkrnelskeigkkkaekkdk..ieelkkelkelkeeleeleaelkeleeelee 101
                 +s+l+++ ++ + ki+e++k+ +e   +i  ++ e+ +   ie+  k+l++++e+l  +e++l++++++l+e
  MMETSP1137-20121227|7646_1  83 VSTLEERIQAIEGKISEVEKQIEECDANITIATSEQMRGywIEK-GKQLRRKEEQLRXKEEQLRDEKRQLRE 153
                 33444444444444444444444444444444444444333333.556666666666666666666665554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (173 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       218  (0.0531448); expected 82.0 (0.02)
Passed bias filter:                      145  (0.0353486); expected 82.0 (0.02)
Passed Vit filter:                        24  (0.0058508); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.25u 0.14s 00:00:00.39 Elapsed: 00:00:00.51
# Mc/sec: 447.73
//
Query:       MMETSP1137-20121227|7647_1  [L=761]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (761 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        77  (0.0187713); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.47u 0.18s 00:00:00.64 Elapsed: 00:00:00.61
# Mc/sec: 1646.62
//
Query:       MMETSP1137-20121227|7648_1  [L=106]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (106 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        68  (0.0165773); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.24
# Mc/sec: 582.95
//
Query:       MMETSP1137-20121227|7650_1  [L=762]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (762 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        86  (0.0209654); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.12s 00:00:00.58 Elapsed: 00:00:01.74
# Mc/sec: 578.02
//
Query:       MMETSP1137-20121227|7651_1  [L=273]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (273 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        68  (0.0165773); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.14s 00:00:00.35 Elapsed: 00:00:00.35
# Mc/sec: 1029.51
//
Query:       MMETSP1137-20121227|7652_1  [L=75]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (75 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        29  (0.00706972); expected 82.0 (0.02)
Passed bias filter:                       27  (0.00658216); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.15s 00:00:00.31 Elapsed: 00:00:00.28
# Mc/sec: 353.54
//
Query:       MMETSP1137-20121227|7653_1  [L=128]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (128 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       236  (0.0575329); expected 82.0 (0.02)
Passed bias filter:                      138  (0.0336421); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.13s 00:00:00.29 Elapsed: 00:00:00.32
# Mc/sec: 527.96
//
Query:       MMETSP1137-20121227|7654_1  [L=618]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (618 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       234  (0.0570453); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.50u 0.18s 00:00:00.68 Elapsed: 00:00:00.84
# Mc/sec: 971.06
//
Query:       MMETSP1137-20121227|7655_1  [L=1026]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1026 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       114  (0.0277913); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.54u 0.21s 00:00:00.75 Elapsed: 00:00:01.20
# Mc/sec: 1128.51
//
Query:       MMETSP1137-20121227|7656_1  [L=497]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0024   14.7   0.0       0.01   12.6   0.0    1.8  2  TIGR02037 degP_htrA_DO: peptidase Do
     0.0051   13.5   0.0     0.0074   13.0   0.0    1.1  1  TIGR00054 TIGR00054: RIP metalloprotease RseP


Domain annotation for each model (and alignments):
>> TIGR02037  degP_htrA_DO: peptidase Do
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.6   0.0     5e-06      0.01     261     298 ..      78     115 ..      37     123 .. 0.77
   2 ?   -0.7   0.0     0.053   1.1e+02     252     293 ..     181     221 ..     171     248 .. 0.76

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 5e-06
   TIGR02037 261 alvaevlkgspAekaGlkaGDvilkvngkkiksaadlr 298
                  ++ +v ++s+Ae+aGl a Dvi k+ng+k +s ++  
  MMETSP1137-20121227|7656_1  78 IVILSVGRDSAAEHAGLGAFDVIKKINGQKPTSPQQAA 115
                 5788999**********************988877765 PP

  == domain 2    score: -0.7 bits;  conditional E-value: 0.053
   TIGR02037 252 slglekakGalvaevlkgspAekaGlkaGDvilkvngkkiks 293
                 s+  e++++a+v +v ++sp  ++ +++GD ++ ++g   ++
  MMETSP1137-20121227|7656_1 181 SFSPEHRNAAIVGKVDSQSPL-RGMVHTGDALILLDGGICSE 221
                 566678999**********96.78899999999999876654 PP

>> TIGR00054  TIGR00054: RIP metalloprotease RseP
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   0.0   3.6e-06    0.0074     194     246 ..      67     120 ..      26     132 .. 0.79

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 3.6e-06
   TIGR00054 194 e.lkelgpkielvlsdvvdnspaekaGlkeGDkilkidgeklkswrdlvklvke 246
                   l +  p  ++v+  v   s+ae+aGl + D i ki+g+k +s ++  kl++ 
  MMETSP1137-20121227|7656_1  67 RpLPRGLPTSQIVILSVGRDSAAEHAGLGAFDVIKKINGQKPTSPQQAAKLLRA 120
                 2577788999*******************************9999888888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (497 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       111  (0.02706); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.29u 0.17s 00:00:00.46 Elapsed: 00:00:00.94
# Mc/sec: 697.86
//
Query:       MMETSP1137-20121227|7657_1  [L=437]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0019   14.9   0.2     0.0045   13.7   0.2    1.5  1  TIGR00873 gnd: 6-phosphogluconate dehydrogenase (decarboxylating)


Domain annotation for each model (and alignments):
>> TIGR00873  gnd: 6-phosphogluconate dehydrogenase (decarboxylating)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   0.2   1.1e-06    0.0045      50     158 ..     209     309 ..     193     319 .. 0.74

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 1.1e-06
   TIGR00873  50 gaesieefvkslekPrkilllvkaGaavdavieellpllekgdiiidGGnslykdterrekelkekgilfvGvGvsGGeeGarkGPslmpGGskeayelvepilqkiaa 158
                  a++++ f k l+ P k ll +  Ga v + i+ +++ll k d +i GG   ++   +  +++       +G+ +   eeGa+  P +m   +++  e+v p+   i++
  MMETSP1137-20121227|7657_1 209 VAKELAAFSKVLDSPAKPLLAILGGAKVSDKIQLIQNLLSKVDKMIIGGGMAFTFL-KVLHDM------PIGSSLY-DEEGAKIVPEIMRIAKEKGVEIVLPVDFVISS 309
                 5789999***********************************97777777766532.222222......2444443.46677777777777766666666666555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (437 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       118  (0.0287665); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.28u 0.19s 00:00:00.47 Elapsed: 00:00:00.47
# Mc/sec: 1227.22
//
Query:       MMETSP1137-20121227|7658_1  [L=734]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (734 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       348  (0.0848367); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.49u 0.13s 00:00:00.62 Elapsed: 00:00:00.71
# Mc/sec: 1364.51
//
Query:       MMETSP1137-20121227|7659_1  [L=330]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (330 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        86  (0.0209654); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.15s 00:00:00.41 Elapsed: 00:00:00.71
# Mc/sec: 613.47
//
Query:       MMETSP1137-20121227|7660_1  [L=932]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (932 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       125  (0.0304729); expected 82.0 (0.02)
Passed bias filter:                       99  (0.0241346); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.56u 0.17s 00:00:00.73 Elapsed: 00:00:01.00
# Mc/sec: 1230.14
//
Query:       MMETSP1137-20121227|7661_1  [L=977]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (977 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       175  (0.0426621); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.62u 0.13s 00:00:00.75 Elapsed: 00:00:00.81
# Mc/sec: 1592.02
//
Query:       MMETSP1137-20121227|7662_1  [L=568]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (568 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        97  (0.023647); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.12s 00:00:00.46 Elapsed: 00:00:00.84
# Mc/sec: 892.50
//
Query:       MMETSP1137-20121227|7663_1  [L=612]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (612 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       224  (0.0546075); expected 82.0 (0.02)
Passed bias filter:                      104  (0.0253535); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.15s 00:00:00.56 Elapsed: 00:00:00.80
# Mc/sec: 1009.72
//
Query:       MMETSP1137-20121227|7664_1  [L=286]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.9e-08   28.5   2.0     0.0023   13.9   0.1    3.0  3  TIGR00870 trp: transient-receptor-potential calcium channel protein


Domain annotation for each model (and alignments):
>> TIGR00870  trp: transient-receptor-potential calcium channel protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.1   5.5e-07    0.0023     132     161 ..      72     101 ..      56     102 .. 0.90
   2 !    4.0   0.0   0.00055       2.3     129     160 ..     102     133 ..     100     136 .. 0.93
   3 !    9.6   0.0   1.1e-05     0.044     129     158 ..     136     165 ..     132     176 .. 0.86

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 5.5e-07
   TIGR00870 132 italilAihkqnyeivklLlekgasveara 161
                  tal+lA+     +i+++Ll  ga+v+a+a
  MMETSP1137-20121227|7664_1  72 RTALHLAAWAGHAKIISMLLTGGANVHATA 101
                 6**************************987 PP

  == domain 2    score: 4.0 bits;  conditional E-value: 0.00055
   TIGR00870 129 tkgitalilAihkqnyeivklLlekgasvear 160
                 + g tal  A+++  +e  k Ll+ ga+v+++
  MMETSP1137-20121227|7664_1 102 MDGXTALAFAAQNGHVEAAKQLLAGGAKVNVK 133
                 5799*************************975 PP

  == domain 3    score: 9.6 bits;  conditional E-value: 1.1e-05
   TIGR00870 129 tkgitalilAihkqnyeivklLlekgasve 158
                  k  t+l+lA+ k  + +v  Ll k a+  
  MMETSP1137-20121227|7664_1 136 KKQNTPLHLAASKGHLDCVAYLLRKNADTR 165
                 5678**********************9866 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (286 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       110  (0.0268162); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.25u 0.16s 00:00:00.41 Elapsed: 00:00:00.50
# Mc/sec: 754.98
//
Query:       MMETSP1137-20121227|7665_1  [L=582]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (582 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        54  (0.0131643); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.16s 00:00:00.54 Elapsed: 00:00:00.43
# Mc/sec: 1786.46
//
Query:       MMETSP1137-20121227|7666_1  [L=406]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.011   14.0   2.0      0.078   11.2   0.2    2.3  2  TIGR01557 myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class


Domain annotation for each model (and alignments):
>> TIGR01557  myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.2   1.9e-05     0.078       2      56 ..     145     194 ..     143     195 .. 0.92
   2 ?    2.1   0.1     0.013        53       3      31 ..     260     284 ..     258     291 .. 0.81

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 1.9e-05
   TIGR01557   2 krvvWteelhrrFlqAvqklGgedkatPkkIlelmkveklTreqvkSHlQkyrlk 56 
                 ++  Wt+ ++    ++v ++G  ++   +kI+e+   e+ T + v+   Q +r +
  MMETSP1137-20121227|7666_1 145 RKTAWTNVEDCIIEEGVSQFGH-KW---SKIAEMLPNER-TDDAVRNRWQRLRRR 194
                 5789******************.**...******99999.******999999977 PP

  == domain 2    score: 2.1 bits;  conditional E-value: 0.013
   TIGR01557   3 rvvWteelhrrFlqAvqklGgedkatPkk 31 
                    Wt+e++r  + Av+  G   +   ++
  MMETSP1137-20121227|7666_1 260 GDMWTPEEDRIIDWAVRVQGL-RW---RA 284
                 568********9999999888.66...55 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (406 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        79  (0.0192589); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.30u 0.16s 00:00:00.46 Elapsed: 00:00:00.50
# Mc/sec: 1071.75
//
Query:       MMETSP1137-20121227|7667_1  [L=206]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00014   19.2   0.1      0.074   10.3   0.0    2.9  3  TIGR03162 ribazole_cobC: alpha-ribazole phosphatase
  ------ inclusion threshold ------
       0.02   12.6   0.1      0.099   10.3   0.0    1.9  2  TIGR00249 sixA: phosphohistidine phosphatase SixA
      0.024   11.9   0.0       0.19    9.0   0.0    2.2  2  TIGR03848 MSMEG_4193: probable phosphomutase, MSMEG_4193 family


Domain annotation for each model (and alignments):
>> TIGR03162  ribazole_cobC: alpha-ribazole phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.0     0.064        87       1      13 [.      18      30 ..      18      34 .. 0.82
   2 !   10.3   0.0   5.4e-05     0.074      31      72 ..      63     109 ..      51     120 .. 0.71
   3 !    4.8   0.0    0.0026       3.6     119     154 ..     126     162 ..     119     181 .. 0.78

  Alignments for each domain:
  == domain 1    score: 0.3 bits;  conditional E-value: 0.064
   TIGR03162  1 lyLiRHgevevnk 13
                ++L+RH+e e n 
  MMETSP1137-20121227|7667_1 18 VFLVRHAESEQNV 30
                68******99775 PP

  == domain 2    score: 10.3 bits;  conditional E-value: 5.4e-05
   TIGR03162  31 qaaalrekl.....edvkfdavvsSplsRcrelAellaeklklpiek 72 
                 q a++r+        +++++ v  Sp +R+r++A  l  + ++p+ +
  MMETSP1137-20121227|7667_1  63 QLAQARAXSssqflXRHDIKLVAHSPYQRARQTASGLFGSAGVPLIE 109
                 55444444333333899******************999888887755 PP

  == domain 3    score: 4.8 bits;  conditional E-value: 0.0026
   TIGR03162 119 dfsqRveefleelake.ekenvlivtHgGvirallah 154
                 ++ +R+ ++   + ++ e en+++v+Hg  ++ ll +
  MMETSP1137-20121227|7667_1 126 QMDERIRSLCGWIDARpERENIVVVGHGQFFKRLLGR 162
                 577899999999999999**********988777655 PP

>> TIGR00249  sixA: phosphohistidine phosphatase SixA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.0      0.14   1.8e+02       2      15 ..      17      30 ..      16      41 .. 0.77
   2 ?   10.3   0.0   7.2e-05     0.099      34      63 ..      72      99 ..      62     136 .. 0.84

  Alignments for each domain:
  == domain 1    score: -0.3 bits;  conditional E-value: 0.14
   TIGR00249  2 elylmrHGeAkeka 15
                +++l+rH e +++ 
  MMETSP1137-20121227|7667_1 17 RVFLVRHAESEQNV 30
                69*****9888765 PP

  == domain 2    score: 10.3 bits;  conditional E-value: 7.2e-05
   TIGR00249 34 vaqwLkkagveldrilvSplvRAeqtaeiv 63
                 +q+L ++   + ++ +Sp+ RA qta  +
  MMETSP1137-20121227|7667_1 72 SSQFLXRHD--IKLVAHSPYQRARQTASGL 99
                567777765..567************9865 PP

>> TIGR03848  MSMEG_4193: probable phosphomutase, MSMEG_4193 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   0.0   0.00014      0.19      32      72 ..      66     106 ..      17     128 .. 0.71
   2 ?   -3.1   0.0      0.68   9.3e+02     148     160 ..     148     160 ..     141     189 .. 0.68

  Alignments for each domain:
  == domain 1    score: 9.0 bits;  conditional E-value: 0.00014
   TIGR03848  32 reqaaalaerladlpiaaivssPlercretveaiaeargle 72 
                 +++a + ++ l    i+ + +sP +r+r+t++ +  + g++
  MMETSP1137-20121227|7667_1  66 QARAXSSSQFLXRHDIKLVAHSPYQRARQTASGLFGSAGVP 106
                 234555667899999****************9998887665 PP

  == domain 2    score: -3.1 bits;  conditional E-value: 0.68
   TIGR03848 148 vavshgDviksvl 160
                 v+v hg   k +l
  MMETSP1137-20121227|7667_1 148 VVVGHGQFFKRLL 160
                 5666666555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (206 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       102  (0.0248659); expected 82.0 (0.02)
Passed bias filter:                       97  (0.023647); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.22u 0.18s 00:00:00.40 Elapsed: 00:00:00.28
# Mc/sec: 937.58
//
Query:       MMETSP1137-20121227|7668_1  [L=786]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   3.6e-170  565.3  16.1   4.4e-128  426.2   0.3    4.4  4  TIGR00198 cat_per_HPI: catalase/peroxidase HPI


Domain annotation for each model (and alignments):
>> TIGR00198  cat_per_HPI: catalase/peroxidase HPI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  426.2   0.3  1.1e-131  4.4e-128      44     426 ..      83     461 ..      75     480 .. 0.92
   2 !  110.0   0.1   4.7e-36   1.9e-32      78     173 ..     524     619 ..     512     629 .. 0.95
   3 !    9.0   0.0   1.7e-05     0.069     227     259 ..     639     671 ..     631     677 .. 0.86
   4 !   27.2   1.9   5.6e-11   2.3e-07     296     399 ..     673     763 ..     670     771 .. 0.87

  Alignments for each domain:
  == domain 1    score: 426.2 bits;  conditional E-value: 1.1e-131
   TIGR00198  44 dyaeefekldlaavkkdlkelltesqdwwpadfghyggllirlawhaagtyriidgrggaadgsqrfaplnswpdnvnldkarrllwpikkkygrklswadliilagtvaledmglkvfgfaagredifepdkdvdwgae..kelltakreekeeleaplaatemgliyvnpegpdgspdplsaaqeirvtfarmgmndeetvaliagghtlgkchgagkaelvgpdpeaapieeqglgwksqygkgvgadtltsglevvwtttptkfdnnyleilfkyewelkkspagaiqfeavdakeiikdaedpnkkrkpim.lvadlalrfdpe..fekisrrfleepeefeeafakawfklthrdlgpksryigkevpkedliwqdplprrd 426
                  y  ++ ++d++avk d+++ll +s++ wpad+g+yg+l++rlawh++g+yr  dgrgg + g+qrf p  sw dn nldkar llwpik+kyg  lsw+dl+ilagt a+e+mg  v gf+agr d  + + + + g+   +e ++   + + + + pl++t +gliy+npegp gspdp  +a eir tf+rm+mnd etvali ggh++gk+hga + +  gp p+  p +     w  + g+g+gad+ tsg+e+ wtt+pt++dn+y+ +l ++ewe +k p g++q+  ++    ++ a  p+   +p+m +++d+al +dp   ++ki + f  +pe f++ fa+aw+klt rd+gp  r +g++vp  +  wq+plp++ 
  MMETSP1137-20121227|7668_1  83 AYETALANIDFEAVKSDIRALLLKSEPHWPADYGNYGPLMVRLAWHCSGSYRLSDGRGGCGGGRQRFDPERSWEDNTNLDKARSLLWPIKRKYGLGLSWGDLFILAGTTAIESMGGPVLGFCAGRLDDADGEWSAELGPTavQEQVAP-CKVNGQCKPPLGSTTVGLIYLNPEGPMGSPDPSRSAGEIRDTFGRMAMNDTETVALIGGGHAFGKAHGACP-DGAGPSPKEDPTN----PWPGKCGSGKGADAXTSGFEGPWTTRPTHWDNEYFXLLVNHEWEVHKGPGGRHQWRVRNGS--QPXAPGPAGGTQPTMmMTSDIALTMDPTgsYQKIIHEFAAKPEXFDRQFAHAWYKLTTRDVGPVTRCFGPDVPPAE-PWQNPLPPPP 461
                 588999*************************************************************************************************************************999999988887622344444.6778899**************************************************************98.678****988875....7*******************************************************99865..6889999999999862578********555******************************************9877.6******875 PP

  == domain 2    score: 110.0 bits;  conditional E-value: 4.7e-36
   TIGR00198  78 hyggllirlawhaagtyriidgrggaadgsqrfaplnswpdnvnldkarrllwpikkkygrklswadliilagtvaledmglkvfgfaagredife 173
                  yg+l++rlaw +a t+r+ d  gga+  ++rf+p+ +wp+n  ld+a+ ll p+k kyg+klswadli+lagt al+++g kv  f++gr d  e
  MMETSP1137-20121227|7668_1 524 YYGALFVRLAWQSASTFRVTDYLGGANGARIRFSPQADWPENAGLDQAIALLKPVKDKYGDKLSWADLIVLAGTTALKSAGAKVEPFCGGRTDASE 619
                 79*****************************************************************************************99765 PP

  == domain 3    score: 9.0 bits;  conditional E-value: 1.7e-05
   TIGR00198 227 qeirvtfarmgmndeetvaliagghtlgkchga 259
                 ++++++f+  g+ + e val+ ggh+lg+ h  
  MMETSP1137-20121227|7668_1 639 DALKAAFKLKGLTNLELVALLGGGHSLGRMHAK 671
                 67899**************************75 PP

  == domain 4    score: 27.2 bits;  conditional E-value: 5.6e-11
   TIGR00198 296 sglevvwtttptkfdnnyleilfkyewelkkspagaiqfeavdakeiikdaedpnkkrkpimlvadlalrfdpefekisrrfleepeefeeafakawfklthrd 399
                 sg  ++wt+ pt  dn+y+   f+ +we   +p  a ++   + ke                l++dlal +d e   i+  f  + e+f +afa aw k+   d
  MMETSP1137-20121227|7668_1 673 SGYVGSWTSDPTVVDNEYFVSTFTEKWEEFTAPVSAKKMFKAKGKEL-------------YRLKTDLALLYDAELAAIATDFAADIEAFRDAFAAAWAKIMNAD 763
                 89999************************999998877655555554.............45899**********************************98766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (786 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        63  (0.0153584); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.16s 00:00:00.68 Elapsed: 00:00:00.60
# Mc/sec: 1729.06
//
Query:       MMETSP1137-20121227|7669_1  [L=180]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (180 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        90  (0.0219405); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.18s 00:00:00.37 Elapsed: 00:00:00.37
# Mc/sec: 642.11
//
Query:       MMETSP1137-20121227|7670_1  [L=132]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (132 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       112  (0.0273038); expected 82.0 (0.02)
Passed bias filter:                      109  (0.0265724); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.17s 00:00:00.34 Elapsed: 00:00:00.32
# Mc/sec: 544.46
//
Query:       MMETSP1137-20121227|7671_1  [L=76]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (76 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       155  (0.0377864); expected 82.0 (0.02)
Passed bias filter:                      125  (0.0304729); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.14s 00:00:00.28 Elapsed: 00:00:00.34
# Mc/sec: 295.03
//
Query:       MMETSP1137-20121227|7672_1  [L=780]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (780 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       147  (0.0358362); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.49u 0.16s 00:00:00.65 Elapsed: 00:00:00.56
# Mc/sec: 1806.17
//
Query:       MMETSP1137-20121227|7673_1  [L=148]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.4e-13   47.9   0.3    3.7e-13   47.3   0.2    1.2  1  TIGR00601 rad23: UV excision repair protein Rad23


Domain annotation for each model (and alignments):
>> TIGR00601  rad23: UV excision repair protein Rad23
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.3   0.2     9e-17   3.7e-13       1      66 [.      36      98 ..      36     101 .. 0.97

  Alignments for each domain:
  == domain 1    score: 47.3 bits;  conditional E-value: 9e-17
   TIGR00601  1 vkltlKtlkqqkfkidlepdetvkelKekiesekgkdayevaqqkLiyaGkiLsDdktvkeykike 66
                +++ +Ktl ++++++++ep++ + ++K ki++++g   ++ +qq+Li+aGk L+D +t+++y+i+ 
  MMETSP1137-20121227|7673_1 36 MQIFVKTLTGKTITLEVEPSDSIDNVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQK 98
                8999*******************************...**************************85 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (148 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        75  (0.0182838); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.18u 0.15s 00:00:00.32 Elapsed: 00:00:00.56
# Mc/sec: 342.71
//
Query:       MMETSP1137-20121227|7674_1  [L=1204]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.28    7.1   5.2       0.53    6.2   3.6    1.4  1  TIGR01667 YCCS_YHJK: integral membrane protein, YccS/YhfK family


Domain annotation for each model (and alignments):
>> TIGR01667  YCCS_YHJK: integral membrane protein, YccS/YhfK family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   3.6   0.00013      0.53     383     490 ..     638     754 ..     635     835 .. 0.71

  Alignments for each domain:
  == domain 1    score: 6.2 bits;  conditional E-value: 0.00013
   TIGR01667 383 fRhavRlslvvllgvaileitalhlgYWiLlttlfvcqpnYgAtrlRlvqRiiGtvvGlviGvall...flvPs.....legklvllvitgvlffl.irsknYafatv..fitllvllc 490
                 ++++ Rls  v ++va +  ++++++ W  +t+ fv  p+ g t      R  G v+G   G  +     lvP+      ++ +++ +  g+ +f+ + sk+ ++a +  ++t  ++l+
  MMETSP1137-20121227|7674_1 638 LKDGARLS--VAMTVAAILSLRFDRAIWGPVTAGFVWEPGLGSTIRTSGLRLQGSVLGCFYGYSVYaigQLVPAgtkrnFLVMSLFSLWVGLCSFVrVASKRNGYAGFvaAFTAIIVLT 754
                 67899***..8889999999************************999999999999999999765422268996211112334555566788888634455555554411566666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1204 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       162  (0.0394929); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.69u 0.15s 00:00:00.84 Elapsed: 00:00:00.70
# Mc/sec: 2270.21
//
Query:       MMETSP1137-20121227|7675_1  [L=307]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.3e-19   65.2   0.8    1.8e-08   32.1   0.1    2.2  2  TIGR02381 cspD: cold shock domain protein CspD


Domain annotation for each model (and alignments):
>> TIGR02381  cspD: cold shock domain protein CspD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.4   0.0   7.2e-12   2.9e-08       3      51 ..      29      75 ..      28      90 .. 0.86
   2 !   32.1   0.1   4.3e-12   1.8e-08       3      59 ..     124     179 ..     123     187 .. 0.87

  Alignments for each domain:
  == domain 1    score: 31.4 bits;  conditional E-value: 7.2e-12
   TIGR02381  3 iGivkWfnnakGfGfisaegkdeDifahystiqmDGYrtLkaGqkvqfe 51
                +G+vk +n  kGfGfi +e  ++D+f h  +i  DG  +L  G  v+f 
  MMETSP1137-20121227|7675_1 29 SGTVKRWNEEKGFGFIVPEEGGDDLFIHRTNIT-DG-DSLTEGSTVHFV 75
                69***************************9995.77.588888888885 PP

  == domain 2    score: 32.1 bits;  conditional E-value: 4.3e-12
   TIGR02381   3 iGivkWfnnakGfGfisaegkdeDifahystiqmDGYrtLkaGqkvqf.evvqgekGa 59 
                 +G+ k +n+ kGfGfi ++  ++D+f h  +iq DG  +L  G +v f +v+++ kG+
  MMETSP1137-20121227|7675_1 124 MGTAKKWNDEKGFGFIIPDDGGDDVFVHRTNIQ-DG-DSLTEGARVAFiKVMDERKGK 179
                 5899999*************************7.77.699******996677888886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (307 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        58  (0.0141394); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.25u 0.12s 00:00:00.37 Elapsed: 00:00:00.36
# Mc/sec: 1125.57
//
Query:       MMETSP1137-20121227|7677_1  [L=536]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.026   11.3   0.0       0.52    7.0   0.0    2.1  2  TIGR00031 UDP-GALP_mutase: UDP-galactopyranose mutase


Domain annotation for each model (and alignments):
>> TIGR00031  UDP-GALP_mutase: UDP-galactopyranose mutase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   0.0   0.00013      0.52       2      42 ..      34      74 ..      33      94 .. 0.83
   2 ?    2.0   0.0    0.0041        17     291     344 ..     168     221 ..     140     247 .. 0.77

  Alignments for each domain:
  == domain 1    score: 7.0 bits;  conditional E-value: 0.00013
   TIGR00031  2 fdyiivGaGlsGivlaeilaklnkrvlvvekrnhiGGncyd 42
                +d +++G+G+   +l+  l+  +k+vl + +    GG +  
  MMETSP1137-20121227|7677_1 34 WDAVVLGTGMKECLLSGLLSVAGKKVLHLXRNSYYGGASAS 74
                799***************************99999997644 PP

  == domain 2    score: 2.0 bits;  conditional E-value: 0.0041
   TIGR00031 291 iveykqltqeeskqtivskeyPleykegd.nepyyPvnddknkalfkkylelask 344
                 +ve  ++ q  s  + v ++ P ++  g  + +  P+ + + +  f ky++l   
  MMETSP1137-20121227|7677_1 168 MVEKTRMAQFTSWVASVKTDDPKTWSAGGvMKTKLPLDTMNGR-EFFKYWKLEAG 221
                 6777777777788888999********9989999**9766555.56679988543 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (536 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        98  (0.0238908); expected 82.0 (0.02)
Passed bias filter:                       97  (0.023647); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.14s 00:00:00.52 Elapsed: 00:00:00.37
# Mc/sec: 1912.06
//
Query:       MMETSP1137-20121227|7678_1  [L=375]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.038   10.7   0.1          2    5.1   0.0    2.1  2  TIGR04142 PCisTranLspir: putative peptidyl-prolyl cis-trans isomerase, LIC12922 family


Domain annotation for each model (and alignments):
>> TIGR04142  PCisTranLspir: putative peptidyl-prolyl cis-trans isomerase, LIC12922 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   0.0   0.00048         2      69     118 ..     151     206 ..     148     224 .. 0.73
   2 ?    3.5   0.0    0.0015         6      88     136 ..     316     364 ..     291     371 .. 0.72

  Alignments for each domain:
  == domain 1    score: 5.1 bits;  conditional E-value: 0.00048
   TIGR04142  69 nekrveaeie...krmevqgisdlkqfkksvesssnlpyelw.ld..elpyqikkg 118
                 ne  ++ae+    + + v g+ + + +k+ vess++lp+++  ++  +l y+   g
  MMETSP1137-20121227|7678_1 151 NEATLQAEVSpdgRELTVSGVRETDHMKHQVESSTTLPFKVDdVNklKLEYRADEG 206
                 666677777533356899*********************87323311445655555 PP

  == domain 2    score: 3.5 bits;  conditional E-value: 0.0015
   TIGR04142  88 dlkqfkksvesssnlpyelwld...elpyqikkgqllqlkvavplpseqevr 136
                 d  + k++v+ss++lpy l      +l y+ k g    +kv+vp p+ ++v+
  MMETSP1137-20121227|7678_1 316 DSGDVKQAVHSSMTLPYTLADAsklQLQYDAKVG---IVKVTVPKPAAENVK 364
                 5567899**********98633111445555555...68*******998886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (375 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        85  (0.0207216); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.29u 0.15s 00:00:00.43 Elapsed: 00:00:00.32
# Mc/sec: 1546.75
//
Query:       MMETSP1137-20121227|7679_1  [L=884]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (884 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        48  (0.0117016); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.53u 0.16s 00:00:00.69 Elapsed: 00:00:00.50
# Mc/sec: 2333.57
//
Query:       MMETSP1137-20121227|7680_1  [L=286]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (286 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        73  (0.0177962); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.13s 00:00:00.36 Elapsed: 00:00:00.32
# Mc/sec: 1179.65
//
Query:       MMETSP1137-20121227|7681_1  [L=489]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.5e-09   32.5   0.0    8.6e-05   19.5   0.0    2.3  2  TIGR01293 Kv_beta: voltage-dependent potassium channel beta subunit


Domain annotation for each model (and alignments):
>> TIGR01293  Kv_beta: voltage-dependent potassium channel beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.7   0.0     1e-05     0.041      11      57 ..      52     100 ..      47     113 .. 0.78
   2 !   19.5   0.0   2.1e-08   8.6e-05     169     301 ..     233     368 ..     147     381 .. 0.74

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 1e-05
   TIGR01293  11 lrvsclglgtwvvfgsqisdeqaedllklay...esginlfdiaevyaag 57 
                 l v ++g+gt  ++++q s + ae l ++a     sg+++fd+ae y a 
  MMETSP1137-20121227|7681_1  52 LSVPNIGVGTI-AWATQDSPDSAERLQRIAAaskASGLDFFDTAERYGAT 100
                 7899*****94.567778888888888877522268***********864 PP

  == domain 2    score: 19.5 bits;  conditional E-value: 2.1e-08
   TIGR01293 169 fnlippiveqaeyhlfqrekvelqlpelyhkigvgavtwsplalalvdskyddk.lp.kaskatlkgyqwlk......ekvrseegrrqqarlkdlaalaeklgctlaqlaiawslrsegvssvllgassaeqlmeslgsl 301
                  n +p   +q  + l+ r +  l   e  + +gv ++++ pla++l ++k     l  k   ++    ++l+        v  + g r    l  l+ ++ +lg t+aq+ai w + ++ +    +g +s  q+ e+ g+l
  MMETSP1137-20121227|7681_1 233 RN-VPLASNQISFSLLYRRQGALATVERCNELGVKMLAYYPLAMGLLSGKLTPSkLRgKRDARSQDLLRYLEggaggtAGVVPDGGIRP--LLSVLHEVSARLGKTPAQVAINWVICKDVIPI--VGLTSLIQVEENAGAL 368
                 44.4556788999999999999****************************875525413333444556777755544333333444333..3555677888***************9998764..5888888888888877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (489 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        79  (0.0192589); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.14s 00:00:00.47 Elapsed: 00:00:00.48
# Mc/sec: 1344.64
//
Query:       MMETSP1137-20121227|7682_1  [L=404]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   2.2e-137  455.7   5.4   2.6e-137  455.4   3.7    1.0  1  TIGR00495 crvDNA_42K: DNA-binding protein, 42 kDa
    5.1e-41  139.0   0.6    6.7e-41  138.6   0.4    1.1  1  TIGR00501 met_pdase_II: methionine aminopeptidase, type II
    2.5e-20   70.9   3.4    3.5e-20   70.4   2.4    1.1  1  TIGR00500 met_pdase_I: methionine aminopeptidase, type I


Domain annotation for each model (and alignments):
>> TIGR00495  crvDNA_42K: DNA-binding protein, 42 kDa
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  455.4   3.7  1.9e-140  2.6e-137       4     374 ..      26     396 ..      20     404 .] 0.93

  Alignments for each domain:
  == domain 1    score: 455.4 bits;  conditional E-value: 1.9e-140
   TIGR00495   4 keeadekavslsnpevvtkykiageiankvlkkvvekcksgakvvdiCekGdelikeetakvykkk...kelekGiafPtavsvnnvvghfsPlksde.lvlkeGdvvkidlGvhidGfialvahtivigaeesvtGrkadviaaaslaleaalrlvkPGkkntevteviekvaasydcksveGvlshqlkrevidGekvvlskpsdsqkkevdkvefeenevyavdilvstgeGkakeederttiykkdedktyklklkasrkviseikkrfsalPftlrnledekrarlGlvecvehkllqpyevlydkeGeivaqfkftvlllpnGsi.rltsselkedlvkselevedaeikallaspikkkknkkkakkas 374
                 +e  +e+a +lsn  +vtky+ ag+ian+vl +++++ ++g k vd+C  Gd+li ++t kvy++k   k++ekG afPt+vsvnn+vgh+sPl s++  vl eGdvvk+dlGvh+dG+ia+ ah  v+g +e v Grkadv++aa +a+e a+r+ k G +n e+t +i kva+sy+c +veGvlshq+k++vid +kv+++k++ +  ++v+++ f  ++v++ di++stgeGk+k+ d+rtt++k+d +++y lk+kasr++ se+++rf++lPftlr+ + e+  r+G+vecv+h+l+  y+vl++k+ e+vaq kft lllp G+  r+t ++++    +sel+++d++++ lla++  kkk+kk++kk  
  MMETSP1137-20121227|7682_1  26 EELDEEAANDLSNSDIVTKYRCAGDIANRVLGELIKAMEPGKKAVDLCTLGDKLIADATDKVYNQKkkgKKIEKGSAFPTCVSVNNCVGHYSPLTSEDkVVLAEGDVVKVDLGVHVDGYIAVLAHSAVVGGAEAVEGRKADVMMAAWTAAELAQRMFKEGATNAEITAMIAKVAESYKCSPVEGVLSHQMKKHVIDANKVIINKTNTE--QQVKEAVFAHGDVFGFDIVMSTGEGKPKQLDNRTTVFKRDLEEKYSLKMKASRQFLSEVNTRFPTLPFTLRAGD-ERIWRMGVVECVKHGLFIEYPVLFEKQDEFVAQAKFTALLLPSGNVaRITAGPPP--NAQSELSLQDEALVELLAQSTDKKKKKKQNKKKK 396
                 333455666******************************************************87522368************************988699*******************************************************************************************************9999..899*********************************************************************99.********************************************97266666655..789*****************99998888776654 PP

>> TIGR00501  met_pdase_II: methionine aminopeptidase, type II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  138.6   0.4   4.9e-44   6.7e-41       7     286 ..      44     348 ..      38     357 .. 0.84

  Alignments for each domain:
  == domain 1    score: 138.6 bits;  conditional E-value: 4.9e-44
   TIGR00501   7 klikaGkilkkvrreaaekivpGlkllevaefvenrirelGae..............PafPanisinevaahftp.kagdetvlkdedvvkldlGahvdGyiadtaitvdlddq......ykellkaakdaletaikeiradvevgeiGkvieeviesygvkPisnLtGhslaryrlhagksipnvkerdttk....leeGevlaiepfatdGvGlvtdg.geveiykllae..rpvrlksarklLkkieenyktLPfakrylekledek.lllalnkLvregviqdypvLkeksgslvaqfehtilve 286
                 k+  aG+i+++v  e  + ++pG k +++  + ++ i +   +               afP+ +s+n++  h+ p   +d+ vl ++dvvk+dlG+hvdGyia  a    ++          +++ aa  a e a +  + +   +ei  +i +v esy++ P+  +  h ++++ + a k i n ++ +++     +  G+v+  +   ++G G+ ++  ++++++k+  e    +++k +r+ L +++  ++tLPf+ r      de+  ++ + + v++g+  +ypvL ek++ +vaq+  t l+ 
  MMETSP1137-20121227|7682_1  44 KYRCAGDIANRVLGELIKAMEPGKKAVDLCTLGDKLIADATDKvynqkkkgkkiekgSAFPTCVSVNNCVGHYSPlTSEDKVVLAEGDVVKVDLGVHVDGYIAVLAHSAVVGGAeavegrKADVMMAAWTAAELAQRMFKEGATNAEITAMIAKVAESYKCSPVEGVLSHQMKKHVIDANKVIINKTNTEQQVkeavFAHGDVFGFDIVMSTGEGKPKQLdNRTTVFKRDLEekYSLKMKASRQFLSEVNTRFPTLPFTLRAG----DERiWRMGVVECVKHGLFIEYPVLFEKQDEFVAQAKFTALLL 348
                 66679***********************998766666666555555566666676666*****************44679999*******************988876666544445665889**********************************************************9998776655431222568****************9985267889988655346889********************98755....44435899*****************************98875 PP

>> TIGR00500  met_pdase_I: methionine aminopeptidase, type I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.4   2.4   2.6e-23   3.5e-20       4     224 ..      37     274 ..      35     282 .. 0.82

  Alignments for each domain:
  == domain 1    score: 70.4 bits;  conditional E-value: 2.6e-23
   TIGR00500   4 kskeeieklrkagelvaevlellerevkpGvstkeldkiakdfiekkgAksafkgyk........gfpgsvCiSvNevviHGip....dkkvlkdgDivniDvgveldGyygDtaktllvgkvse...eaeklleatkealkkaieeikvgkrikeiskaiektaeekgfsvvkeytGHGiGrklHeep.eilnyakket...nvrlkeGmviaiEPmvnekteeiviaadgWtvltkdk 224
                  +++ + k r ag ++++vl +l + ++pG++ ++l ++  + i +   k   ++ k             +C+SvN+ v H  p    dk vl++gD+v++D+gv++dGy +  a + +vg +++   ++  ++ a+  a + a ++ k g++  ei+++i k ae++++s v  +  H + +++  +   i+n ++ e+   ++++ +G v+  + ++++++ + + + +  tv+ +d 
  MMETSP1137-20121227|7682_1  37 SNSDIVTKYRCAGDIANRVLGELIKAMEPGKKAVDLCTLGDKLIADATDKVYNQKKKgkkiekgsA--FPTCVSVNNCVGHYSPltseDKVVLAEGDVVKVDLGVHVDGYIAVLAHSAVVGGAEAvegRKADVMMAAWTAAELAQRMFKEGATNAEITAMIAKVAESYKCSPVEGVLSHQMKKHVIDANkVIINKTNTEQqvkEAVFAHGDVFGFDIVMSTGEGKPKQLDNRTTVFKRDL 274
                 56667899****************************999998888877666555555344555334..448**********87654434789*************************99998655111555567777778888999************************************998887724555555444566899***********************99999998875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (404 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       306  (0.0745978); expected 82.0 (0.02)
Passed bias filter:                      117  (0.0285227); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.35u 0.15s 00:00:00.50 Elapsed: 00:00:00.49
# Mc/sec: 1088.24
//
Query:       MMETSP1137-20121227|7683_1  [L=636]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   8.3e-185  613.2   0.0     1e-184  612.9   0.0    1.0  1  TIGR00118 acolac_lg: acetolactate synthase, large subunit, biosynthetic type
    5.6e-75  250.6   0.1    1.3e-50  170.2   0.0    2.0  2  TIGR03457 sulphoacet_xsc: sulfoacetaldehyde acetyltransferase
    8.9e-75  250.2   0.1    1.2e-74  249.8   0.1    1.1  1  TIGR01504 glyox_carbo_lig: glyoxylate carboligase
    2.4e-67  225.4   0.0    3.2e-67  225.0   0.0    1.1  1  TIGR02418 acolac_catab: acetolactate synthase, catabolic
    2.8e-66  221.9   0.0    3.7e-66  221.5   0.0    1.1  1  TIGR02720 pyruv_oxi_spxB: pyruvate oxidase
    5.3e-45  152.0   0.0    6.9e-45  151.6   0.0    1.1  1  TIGR03254 oxalate_oxc: oxalyl-CoA decarboxylase
    1.9e-24   84.1   0.1    2.5e-23   80.4   0.1    2.4  1  TIGR03393 indolpyr_decarb: indolepyruvate decarboxylase
      9e-24   82.0   0.7    1.7e-22   77.8   0.5    2.5  1  TIGR03394 indol_phenyl_DC: indolepyruvate/phenylpyruvate decarboxylase
      2e-15   54.7   0.0    2.9e-15   54.2   0.0    1.2  1  TIGR00173 menD: 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase
    4.3e-06   23.8   0.0     0.0001   19.3   0.0    2.4  2  TIGR03297 Ppyr-DeCO2ase: phosphonopyruvate decarboxylase
     0.0009   17.0   0.1     0.0019   16.0   0.1    1.5  1  TIGR03846 sulfopy_beta: sulfopyruvate decarboxylase, beta subunit


Domain annotation for each model (and alignments):
>> TIGR00118  acolac_lg: acetolactate synthase, large subunit, biosynthetic type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  612.9   0.0  2.8e-187    1e-184       1     554 [.      60     616 ..      60     618 .. 0.97

  Alignments for each domain:
  == domain 1    score: 612.9 bits;  conditional E-value: 2.8e-187
   TIGR00118   1 lkgaeilveslkkegvetvfGyPGGavlpiydalydselehilvrheqaaahaadGyarasGkvGvvlatsGPGatnlvtgiatayldsvPlvvltGqvatsliGsdafqeidilGitlpvtkhsflvkkaedlpeilkeafeiastGrPGPvlvdlPkdvteaeieleveekvelpgykptvkghklqikkaleliekakkPvllvGgGviiaeaseelkelaerlkipvtttllGlGafpedhplalgmlGmhGtkeanlavseadlliavGarfddrvtgnlakfapeak.........iihididPaeigknvkvdipivGdakkvleellkklkeeekkekeWlekieewkkeyilk.ldeeeesikPqkvikelskllkd...eaivttdvGqhqmwaaqfyktkkprkfitsgGlGtmGfGlPaalGakvakpeetvvavtGdgsfqmnlqelstiveydipvkivilnnellGmvkqWqelfyeerysetklaselpdfvklaeayGvkgiriekpeeleeklkealeskepvlldvevdkeeevlPmvapGagldelv 554
                 l+ga+++ esl + gv++vfGy GGa lp+ d++ +s +++i+ r eq+  haa+GyarasGkvGv+l+tsGPG tn++t++ +a  ds+P+v+l+Gqv+ts++G+dafqe+  + +t+p+tk+s++++++e++ ++++eaf++as+G+PGPv++dlPkdv+++ ++   +    lp   p ++++++ +++++ l++ akkP+ +vG G+i a   +el++lae +++pvtttl  +G f+e+h+l++ mlGmhG+++an+a++eadl++a+G rfddr+tg l+k+apeak         +ih+di+P++ g++++  +++ Gdak+ l+ ll  ++++++ e  W+e+ + +k++ +++     ++++k q+vi++l    +    + +v+t+vG hqm + qf+++++pr+ itsg lGtmGfGlPaa+Ga+va pe+tv+ v+Gd+sf+m+l++l t++e ++p+k+ i+n+  + mv+ Wq+lf++ r  +t   +  pd+vkla+ay  ++   e+ eel   ++++++ k+pvl+d++v  ++ +lPmvapG+glde++
  MMETSP1137-20121227|7683_1  60 LTGAQLMHESLVECGVDVVFGYSGGANLPVLDQFNQSPMRFIMNRSEQCCGHAAEGYARASGKVGVILTTSGPGLTNIITPLQDARGDSTPIVALSGQVPTSAVGTDAFQECLAVDLTRPCTKWSYQIRSVEEVRSVVHEAFYVASSGKPGPVHLDLPKDVMTTLLRGAAP---ALPLKPPPISPSPASVQAVARLLSIAKKPIFYVGQGAIEA--GDELMKLAEICDVPVTTTLHAMGVFDEHHHLSMHMLGMHGAAYANYAIQEADLIVAIGSRFDDRTTGVLNKYAPEAKkaheegrggLIHFDIEPTQFGRVINPTVAVAGDAKRALQMLLPMVEKQSRPE--WIERCHGLKRDFPFSfTPAPNGQLKTQTVIDALNTGFDAtrhKLVVSTGVGNHQMMSCQFLRWTTPRSIITSGSLGTMGFGLPAAIGAQVACPEKTVLLVDGDSSFNMTLNDLGTVKEHQLPIKMAIMNDGRQQMVHVWQKLFFDSRIVATDNVN--PDYVKLAQAYDXEAYSCESMEELPGVIDKFVNAKGPVLVDFKVL-PDICLPMVAPGKGLDEMF 616
                 68*****************************************************************************************************************************************************************99999888...89999*********************************76..589************************************************************************************************************************999998..**************945566777*********986544434399**********************************************************************************************************99886..*******************************************9.99**************97 PP

>> TIGR03457  sulphoacet_xsc: sulfoacetaldehyde acetyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  170.2   0.0   3.5e-53   1.3e-50       3     330 ..      61     394 ..      59     411 .. 0.90
   2 !   78.6   0.0   1.9e-25   7.3e-23     396     544 ..     441     588 ..     417     603 .. 0.92

  Alignments for each domain:
  == domain 1    score: 170.2 bits;  conditional E-value: 3.5e-53
   TIGR03457   3 tpseafvevlvaeGvtevfGilGsafmdvldlfakaGirliavvheqgaghmadgyarvtGkasvviGqnGPGvtnlvtaiaaaywahtPlvivtPeagtktiGlgGfqeadqlalfeeltkyqeevrdPsriaevlarvfekalael.gPaqlniPrdyfygeieveiprpdrle..rgaGgatslaeaaellaeakfPviisGaGvviadaveevkalaekldaPvvnsylhndsfPashelwvGPlGyqGskaamkllsdadvvlalGtrlsp..fgtlPqygidy..wPknak..iiqvdvdakrlGlvkkvtvgiiGdakaaaaellkrlea 330
                 t  + + e lv  Gv+ vfG  G a ++vld f ++ +r+i  + eq  gh a+gyar++Gk++v++   GPG+tn++t ++ a    tP+v ++ +  t+++G + fqe+  + l +  tk+  ++r  + +  v++ +f  a ++  gP++l++P+d ++  ++   p   +l+    +  ++s+++ a+ll+ ak P+   G+G +   a +e ++lae  d Pv+++      f   h+l++  lG +G+  a + +++ad+++a+G+r++    g l +y  +     ++ +  +i  d+++ ++G+v + tv++ Gdak a + ll  +e 
  MMETSP1137-20121227|7683_1  61 TGAQLMHESLVECGVDVVFGYSGGANLPVLDQFNQSPMRFIMNRSEQCCGHAAEGYARASGKVGVILTTSGPGLTNIITPLQDARGDSTPIVALSGQVPTSAVGTDAFQECLAVDLTRPCTKWSYQIRSVEEVRSVVHEAFYVASSGKpGPVHLDLPKDVMTTLLRGAAPAL-PLKppPISPSPASVQAVARLLSIAKKPIFYVGQGAIE--AGDELMKLAEICDVPVTTTLHAMGVFDEHHHLSMHMLGMHGAAYANYAIQEADLIVAIGSRFDDrtTGVLNKYAPEAkkAHEEGRggLIHFDIEPTQFGRVINPTVAVAGDAKRALQMLLPMVEK 394
                 66778999****************************************************************************************************************************************987559*************999988864.444113456789**********************996..568***************999999**************************************86114557777654311233332449***************************9998877765 PP

  == domain 2    score: 78.6 bits;  conditional E-value: 1.9e-25
   TIGR03457 396 edaivstdiGnvasvansylkfekprkflaalsfGncGyafpaiiGakvaaPdrPvvayaGdGawGlslseistavredlPvtavvfrnrqwgaekknqvdfynrrfvateleselsfakvaealGakGvvvdkledvaealkkaieaq 544
                 ++ +vst +Gn   ++  +l+++ pr+ +++ s G  G+++pa iGa+va+P++ v+ + Gd ++ ++l+++ t+  ++lP+ + ++++ +       q +f++ r vat+  ++  ++k+a+a+  +    + +e++   + k ++a+
  MMETSP1137-20121227|7683_1 441 HKLVVSTGVGNHQMMSCQFLRWTTPRSIITSGSLGTMGFGLPAAIGAQVACPEKTVLLVDGDSSFNMTLNDLGTVKEHQLPIKMAIMNDGRQQMVHVWQKLFFDSRIVATDNVNP-DYVKLAQAYDXEAYSCESMEELPGVIDKFVNAK 588
                 5679************************************************************************************9999999999************97777.8*********************99999988765 PP

>> TIGR01504  glyox_carbo_lig: glyoxylate carboligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  249.8   0.1   3.2e-77   1.2e-74      13     485 ..      70     542 ..      60     577 .. 0.88

  Alignments for each domain:
  == domain 1    score: 249.8 bits;  conditional E-value: 3.2e-77
   TIGR01504  13 lekegittafgvpgaainplysalkarggirhvlarhvegashmaegytrakagnigvcigtsgpagtdmitglysaaadsipilcitgqaprarlhkedfqavdiaaiakpvaklavtvleaalvprvlqkafhlmrsgrpgpvlidlpvdvqvaeiefdidayepl..avykpaatrvqiekavellnaaerplivagggvinadaadllvefaeltgvpviptlmgwglipddhelmagmvglqtshrygnatllesdlvlgignrfanrhtgsvdvyt.kgrk........lvhvdieptqigrvlapdlgivsdakaalkllvevarelkaagrlpdrsewaaeaqerkktlk.rkthfddvpvkpqrvyeemnkafg..rdvtyvtt.iglsqiagaqllhvykdrhwincgqagplgwtvpaalgvaaadperqvvalsgdydfqflieelavgaqfkipyihvlvnnaylglirqaqraf 485
                 l + g+   fg  g a  p+   +++   +r ++ r  + + h aegy+ra +g++gv + tsgp  t++it l  a +ds pi+ ++gq p++ +  + fq      +++p +k++  ++    v  v+ +af++  sg+pgpv +dlp dv ++ +     a  pl  ++  p+ + vq      ll  a++p+   g g i+  a d l+++ae++ vpv  tl   g++ + h+l   m+g+  +  y n ++ e+dl++ ig rf +r tg +++y+ + +k        l+h dieptq grv+ p + ++ dak al++l+ + ++       ++r ew++ +   k+ +    t   +  +k q v + +n  f   r+   v+t +g  q+ ++q+l    +r  i  g  g +g+ +paa+g + a pe++v+ + gd  f++ +++l    ++++p    ++n+    ++   q+ f
  MMETSP1137-20121227|7683_1  70 LVECGVDVVFGYSGGANLPVLDQFNQ-SPMRFIMNRSEQCCGHAAEGYARA-SGKVGVILTTSGPGLTNIITPLQDARGDSTPIVALSGQVPTSAVGTDAFQECLAVDLTRPCTKWSYQIRSVEEVRSVVHEAFYVASSGKPGPVHLDLPKDVMTTLLRGAAPAL-PLkpPPISPSPASVQ--AVARLLSIAKKPIFYVGQGAIE--AGDELMKLAEICDVPVTTTLHAMGVFDEHHHLSMHMLGMHGA-AYANYAIQEADLIVAIGSRFDDRTTGVLNKYApEAKKaheegrggLIHFDIEPTQFGRVINPTVAVAGDAKRALQMLLPMVEK-------QSRPEWIERCHGLKRDFPfSFTPAPNGQLKTQTVIDALNTGFDatRHKLVVSTgVGNHQMMSCQFLRWTTPRSIITSGSLGTMGFGLPAAIGAQVACPEKTVLLVDGDSSFNMTLNDLGTVKEHQLPIKMAIMNDGRQQMVHVWQKLF 542
                 55679999************999976.579********************8.69************************************************999999***********************************************9998766554.551144555555555..567899*************997..5799***********************************987.6******************************742333333444458********************************98754.......5789******999998861457788889************9962244445544499***********************************************************************999999998888887777765 PP

>> TIGR02418  acolac_catab: acetolactate synthase, catabolic
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  225.0   0.0   8.5e-70   3.2e-67       1     529 [.      62     597 ..      62     599 .. 0.90

  Alignments for each domain:
  == domain 1    score: 225.0 bits;  conditional E-value: 8.5e-70
   TIGR02418   1 gadlvvdslenqgveyvfGiPGakidrlfdaledkkielivvrheqnaafmaqavgrltGkpGvalvtsGPGvsnlvtGlltansegdpvvaigGqvkradklklthqsldnvallrpitkysaevqdvdalsevvanafrlaesgkkGaafvslPqdvvdepvsvkaikavaapklgaaadadidevieaikkaklpvlllGlkasseetveavrkllkktklpvvetfqgaGvvsreledeffGrvGlfrnqaGdkllkkadlvitiG..ydp....i..ey..epklWnkeldakivaidvekaeidknyqPklelvGdiastldllaerveelelaedakdileelkqeleeveevkadlksaelhPleiikalqeivtddvtvtvdvGshyiWlaryfksyearqllisnGmqtlGvalPWaisaallkPnekvvsvsGdGGflfssmeletavrlklnivhiiWndakynmvelqeekkyk.rssgvdfGpvdlvkyaesfGakGlrveskdeleevlkeameveGPvvvdiPv 529
                 ga+l+ +sl++ gv+ vfG  G     ++d ++++ +++i+ r eq +   a++ +r +Gk Gv+l+tsGPG++n++t l  a  ++ p+va++Gqv  +     + q   +v l rp tk+s +++ v+++  vv +af +a+sgk+G   + lP+dv+    +  a     +p   +++ a++++v++ +  ak+p++ +G+ a +  + + + kl++  ++pv  t+++ Gv ++++ +  +  +G+      +  +++adl+++iG  +d     +   y  e+k   +e +  +++ d+e+++  + + P+  + Gd  ++l++l   ve++  + +  +  + lk++   + +   + + ++   ++ +++  +++ +++ v++ vG h++  +++++  ++r ++ s    t+G +lP ai+a++  P++ v+ v Gd  f ++  +l t    +l+i   i nd++ +mv++ ++  ++ r  + d  + d+vk a+++  + +  es +el  v+++ ++++GPv+vd  v
  MMETSP1137-20121227|7683_1  62 GAQLMHESLVECGVDVVFGYSGGANLPVLDQFNQSPMRFIMNRSEQCCGHAAEGYARASGKVGVILTTSGPGLTNIITPLQDARGDSTPIVALSGQVPTSAVGTDAFQECLAVDLTRPCTKWSYQIRSVEEVRSVVHEAFYVASSGKPGPVHLDLPKDVMTTLLRGAAPALPLKPPPISPSPASVQAVARLLSIAKKPIFYVGQGAIE--AGDELMKLAEICDVPVTTTLHAMGVFDEHH-HLSMHMLGMHGAAYANYAIQEADLIVAIGsrFDDrttgVlnKYapEAKKAHEEGRGGLIHFDIEPTQFGRVINPTVAVAGDAKRALQMLLPMVEKQSRP-EWIERCHGLKRDFPFSFTPAPNGQLKTQTVIDALNTGFDATRHKLVVSTGVGNHQMMSCQFLRWTTPRSIITSGSLGTMGFGLPAAIGAQVACPEKTVLLVDGDSSFNMTLNDLGTVKEHQLPIKMAIMNDGRQQMVHVWQKLFFDsRIVATDNVNPDYVKLAQAYDXEAYSCESMEELPGVIDKFVNAKGPVLVDFKV 597
                 89*******************999999***************************************************************************************************************************************8888777666677777777789*******************98865..556799*******************98654.44567899999999***************6655322222335722445566777889**********************************99987655.56677788998887766655555544555666666667899999************9999*******************************************************************************99999988************************************************9765 PP

>> TIGR02720  pyruv_oxi_spxB: pyruvate oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  221.5   0.0     1e-68   3.7e-66       8     538 ..      69     604 ..      62     608 .. 0.88

  Alignments for each domain:
  == domain 1    score: 221.5 bits;  conditional E-value: 1e-68
   TIGR02720   8 vleaWgvdhiyGlpgGslnslmdalaeerdrlkyiqvrheevGalaaaadakltGkiGvafGsaGPGavhllnGlydakedhvPvlalvgqvatkelnmdafqelneePiyddvavynrtvvtaeslPkvideairaaya.kkGvavveiPvdfgyqeiednsyyaasvsek.svllPaldeeevkkvvkllkaakrPviyvGvGarkageelkalseklkvPlistvlakgiieddyeaylGsayrvaskpanevlaeadlvlfvGnnyp.........fa.evlkafkntkk..iqididpeklGkrhkldvavladakkalkailakveeresspyyqaavadkknWrkylakledktegplqleqvydaink...eaeddavysidvGdvtinserllkltpkqklltsalfatmGvgvPgaiaaklnyPdrqvfnlaGdGafsmvmedlltevkydlpvinivfsneelgfikdeq.edsekdliGvdltdadfakiaegvgvkgfrvekieelkavleeakkelkedkpvlidakitdkrplp 538
                  l + gvd ++G++gG+   ++d ++  +  +++i  r e+    aa   a+ +Gk+Gv + ++GPG ++++  l da+ d +P++al gqv+t  +  dafqe     +    + +  ++   e++  v+ ea   a + k G+  +++P+d+  + +        + + k  ++   +   +v+ v +ll  ak+P++yvG+Ga +ag+el++l+e   vP+ +t +a g+++++++  +   +  +   an ++ eadl++ +G+ +          +a e  ka ++ +   i  di+p+++G+  +  vav +dak+al+ +l  ve+++   + +     k   r++  ++    +g+l+++ v da+n     + ++ v s  vG+ ++ s ++l+ t  +  +ts+   tmG+g+P+ai a++  P++ v  + Gd +f+m+ +dl t  +++lp+   ++ + + ++++  q    +  ++  d  + d+ k+a++++ +++  e +eel+ v+++ +   +++ pvl+d k+  +  lp
  MMETSP1137-20121227|7683_1  69 SLVECGVDVVFGYSGGANLPVLDQFN--QSPMRFIMNRSEQCCGHAAEGYARASGKVGVILTTSGPGLTNIITPLQDARGDSTPIVALSGQVPTSAVGTDAFQECLAVDLTRPCTKWSYQIRSVEEVRSVVHEAFYVASSgKPGPVHLDLPKDVMTTLLRGAA---PALPLKpPPIS--PSPASVQAVARLLSIAKKPIFYVGQGAIEAGDELMKLAEICDVPVTTTLHAMGVFDEHHHLSMHMLGMHGAAYANYAIQEADLIVAIGSRFDdrttgvlnkYApEAKKAHEEGRGglIHFDIEPTQFGRVINPTVAVAGDAKRALQMLLPMVEKQSRPEWIERCHGLK---RDFPFSFTPAPNGQLKTQTVIDALNTgfdATRHKLVVSTGVGNHQMMSCQFLRWTTPRSIITSGSLGTMGFGLPAAIGAQVACPEKTVLLVDGDSSFNMTLNDLGTVKEHQLPIKMAIMNDGRQQMVHVWQkLFFDSRIVATDNVNPDYVKLAQAYDXEAYSCESMEELPGVIDKFV---NAKGPVLVDFKVLPDICLP 604
                 566789***********999999875..5668*******************************************************************************************************999873669999******8765554332...22333202334..45578999*********************************************************************************98533222211123122333334444569***********************************999999988776655...578899*******************8332456799***********************************************************************99******99999999999999888456788999**********************************988...7889*******99888877 PP

>> TIGR03254  oxalate_oxc: oxalyl-CoA decarboxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  151.6   0.0   1.9e-47   6.9e-45       3     537 ..      60     597 ..      58     602 .. 0.84

  Alignments for each domain:
  == domain 1    score: 151.6 bits;  conditional E-value: 1.9e-47
   TIGR03254   3 tdGlhlvidalklngietiygvvG...ipvtdlarlaqaeGlryigfrheqsageaaaaaGfltqkpGvcltvsapGflnGltalanattncfplilisGssereivdlqrGdyeeldqlavakpfakaayrvsraedlGialarairaavsGrpGGvyldlpakvlgevleaekakkslvkvvdpapkqlpspdsvdravellkdakrplillGkGaayaqadeeirelvektgipflpmsmakGllpdthpqs.......aaaarslvlkeadvvllvGarlnw....llsh..Gkakswae..dakfiqvdieateldsnrkiaapvvGdiasvveallekvkndtvkapaewlnalkakkeknvaklaeklsaeksplnyysalealkdvlkdnpdiylvneGa.ntldlarnvidmykprkrldvGtwGvmGiGmGyaiaaavet.gkpvvaleGdsafGfsGmeveticrynlpvvvvilnndGiyrGddvnssg..adpaptvlvkkarydklieafgGvgynvttpdelkaaleealesgkptlidavi 537
                 ++G++l+ ++l   g++ ++g  G   +pv d  ++ + + +r+i  r eq  g+aa +    + k Gv lt s pG+ n +t l +a  ++ p++ +sG      v  +   ++e   +++++p +k +y++   e++   +  a  +a sG+pG v+ldlp +v++  l      +  +   +p p   psp+sv+    ll  ak+p+  +G+Ga   +a +e+ +l e +++p      a G++++ h  s        aa   ++++ead+++ +G+r++     +l +   +ak+  e     +i  die+t++    + ++ v Gd + +++ ll  v+++   + +ew++  +  k +    ++   +     l+  + ++al+  + + ++  +v+ G  n   ++ + +    pr  + +G+ G mG G+  ai+a v + +k v+ + Gds+f +   ++ t+  ++lp+ + i+n++   +  +v +    +   +++   +  y kl +a+  ++y   +++el   +++ ++++ p l+d  +
  MMETSP1137-20121227|7683_1  60 LTGAQLMHESLVECGVDVVFGYSGganLPVLD--QF-NQSPMRFIMNRSEQCCGHAAEGYARASGKVGVILTTSGPGLTNIITPLQDARGDSTPIVALSGQVPTSAVGTD--AFQECLAVDLTRPCTKWSYQIRSVEEVRSVVHEAFYVASSGKPGPVHLDLPKDVMTTLLRGA---APALP-LKP-PPISPSPASVQAVARLLSIAKKPIFYVGQGAI--EAGDELMKLAEICDVPVTTTLHAMGVFDEHHHLSmhmlgmhGAAYANYAIQEADLIVAIGSRFDDrttgVLNKyaPEAKKAHEegRGGLIHFDIEPTQFGRVINPTVAVAGDAKRALQMLLPMVEKQ---SRPEWIERCHGLKRDFPFSFTPAPN---GQLKTQTVIDALNTGFDATRHKLVVSTGVgNHQMMSCQFLRWTTPRSIITSGSLGTMGFGLPAAIGAQVACpEKTVLLVDGDSSFNMTLNDLGTVKEHQLPIKMAIMNDGRQ-QMVHVWQKLffDSRIVATDNVNPDYVKLAQAYDXEAYSCESMEELPGVIDKFVNAKGPVLVDFKV 597
                 58999****************99833334443..44.4578******************99*****************************************99999876..6999999*************************************************999333...32222.234.5577**************************97..67899*************************998733333323566789*************9864111144431124444444124459******************************99988765...5689***999998888877776544...46777788888888888999999999997366778999*******************************97368899*****************************987654.443443332224444444456889*************************************9876 PP

>> TIGR03393  indolpyr_decarb: indolepyruvate decarboxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.4   0.1   6.8e-26   2.5e-23       6     461 ..      65     531 ..      60     595 .. 0.74

  Alignments for each domain:
  == domain 1    score: 80.4 bits;  conditional E-value: 6.8e-26
   TIGR03393   6 ylldrlteiGikhlfGvpGdynlqfldrviaspdiswvGcanelnaayaadGyarckg.aaallttfGvGelsainGiaGsyaeylpvihivgapataaqrrGellhhtlGdGdfrhfirmaaevtvaqavltaenataeidrvitealrerrpgylllpvdvaakavtapaqalvthkpahadaalrafraaaedllakakrvslladflalrfslksalqklleksplahatllmGkGvldeqqagfvGtysGsasagavkeaiedadavicvGvrftdtitaGfthqlaiekl...........idvqpta.arvGnevfasv.pmadaieelekltekfgs.rw.dsaaa....ipaaqpaesravlsqeefwqalqr.flrpgdiiladqGts...afGaaalrlpadvqlivqplwGsiGytlaaafGaqtaeperrvilliGdGsaqltiqelGsllrdkqrliilvlnneGy 461
                  + + l e+G++ +fG  G  nl  ld+  +sp + ++    e    +aa+Gyar  g ++ +ltt G G    i  +  +  +  p++ + g   t+a    + +  +l     r  ++ + ++   + v      + e   v      +  p++l lp dv ++     a al ++ p  + +   a  +a  +ll+ ak+  +     a+  +  ++l kl e + ++ +t l   Gv+de+++  +    G   a   + ai++ad ++++G rf d  t  + +  + +k+            d++pt   rv n + a     + a+++l +++ek ++ +w +++       p++    ++  l  +    al++ f      ++   G      +    lr  +   +i     G++G+ l+aa+Gaq+a+pe+ v+l+ Gd s ++t+++lG++ +++q +i + + n+G 
  MMETSP1137-20121227|7683_1  65 LMHESLVECGVDVVFGYSGGANLPVLDQFNQSP-MRFIMNRSEQCCGHAAEGYARASGkVGVILTTSGPGLTNIITPLQDARGDSTPIVALSGQVPTSAV-GTDAFQECLAVDLTRPCTKWSYQIRSVEEV---RSVVHEAFYV--ASSGKPGPVHLDLPKDVMTTLLRGAAPALPLKPPPISPSP--ASVQAVARLLSIAKKPIFYVGQGAI--EAGDELMKLAEICDVPVTTTLHAMGVFDEHHHLSMH-MLGMHGAAYANYAIQEADLIVAIGSRFDDRTTGVLNKYAPEAKKaheegrgglihFDIEPTQfGRVINPTVAVAgDAKRALQMLLPMVEKQSRpEWiERCHGlkrdFPFSFTPAPNGQLKTQTVIDALNTgFDATRHKLVVSTGVGnhqMMSCQFLRWTTPRSIITSGSLGTMGFGLPAAIGAQVACPEKTVLLVDGDSSFNMTLNDLGTV-KEHQLPIKMAIMNDGR 531
                 5567899*********************99999.6788899999************9846899**************************99886555443.344555555544445555555555333222...2222232223..233566799*********9999888777777777666666..7889999********9887766665..556789***********************9975544.4455556666789**************998666555555544432233333332246677542455554444331345689999999997654234255554111256665555667787788888887625444455555555441114566779*****************************************************85.7888888888888885 PP

>> TIGR03394  indol_phenyl_DC: indolepyruvate/phenylpyruvate decarboxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.8   0.5   4.5e-25   1.7e-22       6     467 ..      66     540 ..      60     602 .. 0.76

  Alignments for each domain:
  == domain 1    score: 77.8 bits;  conditional E-value: 4.5e-25
   TIGR03394   6 lldalkdrgakevfgipgdfalpffkvieetgilplvtlshepavgfaadaaaryrgslgvaavtygagalnlvnaiagayaekspvvvisgapgtregtaglllhhqartldsqlrvfkevtvdqavlddpatapaeiarvlrsalelsrpvyleiprdlvdakve.pvpklaasevdadaldacaeevldrvrsaaspvlvvdvevrrygvedkvaelaerlgvpvvttfmgrglladadsvlegtylgvagdeelselveesdgllllgvilsdtnfavssskldrrrtvhaedrevrvgyhvyrdiplaalvdalla................sasglppddr.avrgkgla.ayprglt.adaediapsdiaaavndlfdrhgkmpl.aadigdclftalev....ddialvapgyyagmgfgvpagvgvqits.gkrslvlvgdgafqmtglelgnckrlgidpivvlfnnaswemlrvfqp 467
                 + ++l + g   vfg  g   lp +   +++ +  ++    e   g aa+  ar +g +gv   t g g  n++  + +a  + +p+v +sg   t   ++      ++  +d      k    +   +++      e   v  ++  +  pv+l++p+d++ + +    p+l+ ++  +    a  + v   +  a+ p++ v+      g  d++ +lae   vpv tt+   g++++  + l    lg+ g +    +++e+d+++ +g  + d   +v ++   + +  h e+r   + + + +   ++ +++   a                +   + +++    r +gl+  +p  +t a   ++  + +  a+n  fd + ++ + ++ +g+  +   +        ++++ g   +mgfg+pa +g+q+++ +k +l++ gd +f+mt  +lg  k   +   + ++n+   +m++v+q 
  MMETSP1137-20121227|7683_1  66 MHESLVECGVDVVFGYSGGANLPVLDQFNQSPMRFIMN-RSEQCCGHAAEGYARASGKVGVILTTSGPGLTNIITPLQDARGDSTPIVALSGQVPTSAVGTD--AFQECLAVDLTRPCTKWS-YQIRSVEEVRSVVHEAFYV--ASSGKPGPVHLDLPKDVMTTLLRgAAPALPLKPPPISPSPASVQAVARLLSIAKKPIFYVGQGAIEAG--DELMKLAEICDVPVTTTLHAMGVFDEH-HHLSMHMLGMHGAAYANYAIQEADLIVAIGSRFDDRTTGVLNKYAPEAKKAHEEGRGGLIHFDI-EPTQFGRVINPTVAvagdakralqmllpmvE---KQSRPEwIERCHGLKrDFPFSFTpAPNGQLKTQTVIDALNTGFDATRHKLVvSTGVGNHQMMSCQFlrwtTPRSIITSGSLGTMGFGLPAAIGAQVACpEKTVLLVDGDSSFNMTLNDLGTVKEHQLPIKMAIMNDGRQQMVHVWQK 540
                 45689999***************999999887665555.458899***********************************************8666544333..344555565544444432.2222233333333333333..3334668*********99887752689********************************998877666..7799*******************9988.7788899*************************************************98776665.4556777777666666777777778885431...33333202334444316788887355667888899999**99987655444366677644433332111134679999******************99566677777*******************98888899**********995 PP

>> TIGR00173  menD: 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.2   0.0   7.8e-18   2.9e-15       3     290 ..      63     334 ..      61     410 .. 0.87

  Alignments for each domain:
  == domain 1    score: 54.2 bits;  conditional E-value: 7.8e-18
   TIGR00173   3 asalveeLvrlGvrevvisPGSRstPLalalaeheklkvhvhiDERsaaFfALGlakasgrPvalvcTSGTAvanllPAvvEAklsrvpLivLtADRPpeLrgcganQtidQeklfgsyvraslelpepeaeeeleylrstveealaealkappgpvHlNvpfrePlvpeeleaeeqewekeeaatkvakeekeldeesveelaeeleqkkrgliiaGelageeeaealaalaealgwplladplSglrngekllviesydlllaeeelkeel.kpdlvirfGgslvsk 290
                 a+ + e Lv+ Gv+ v    G  + P   ++++ + ++++++  E   ++ A G+a+asg++ ++++TSG  + n++     A  ++ p++ L+   P   +g++a Q     +l    +++s+++ +       e++rs+v+ea+  a++ +pgpvHl++p +  ++  +l + + +      a  ++ +  +++++sv+++a+ l+ +k++++ +G+ a  e+ ++l +lae  ++p+ +   +   ++e++++  ++  ++ ++ ++ +  ++dl++ +G+++  +
  MMETSP1137-20121227|7683_1  63 AQLMHESLVECGVDVVFGYSGGANLPVLDQFNQSP-MRFIMNRSEQCCGHAAEGYARASGKVGVILTTSGPGLTNIITPLQDARGDSTPIVALSGQVPTSAVGTDAFQECLAVDLTRPCTKWSYQIRSV------EEVRSVVHEAFYVASSGKPGPVHLDLPKD--VMT-TLLRGAAP------ALPLKPPPISPSPASVQAVARLLSIAKKPIFYVGQGAI-EAGDELMKLAEICDVPVTTTLHAMGVFDEHHHLSMHMLGMHGAAYANYAIqEADLIVAIGSRFDDR 334
                 5678899*********9999999***999999988.9****************************************************************************************9654......46889********************9944..333.34444444......457889999999**************************.8**********************99999999444444444444444444459********987655 PP

>> TIGR03297  Ppyr-DeCO2ase: phosphonopyruvate decarboxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.0     0.073        27      24      70 ..      95     142 ..      87     152 .. 0.83
   2 !   19.3   0.0   2.7e-07    0.0001     190     337 ..     443     600 ..     414     608 .. 0.69

  Alignments for each domain:
  == domain 1    score: 1.4 bits;  conditional E-value: 0.073
   TIGR03297  24 eedlkhviaanEGaAvglaaGaylatgkravvymq.nsGlGnavnPll 70 
                 ++++++++  +E +    a G++ a+gk++v++     Gl n + Pl 
  MMETSP1137-20121227|7683_1  95 QSPMRFIMNRSEQCCGHAAEGYARASGKVGVILTTsGPGLTNIITPLQ 142
                 67788999999999999999*********999875156999*****95 PP

  == domain 2    score: 19.3 bits;  conditional E-value: 2.7e-07
   TIGR03297 190 ivsttGklsRElyelrdkkgeghardfltvGs...mGhasaialGlalakpdkkvvvlDGDGAalmhlGglatigkqspknliHvlldngahdsv........GgqatvsqkldlaeiakacGY.akalevstleelesalkkaksaegpalievkvrkg 337
                 +v +tG+    ++  +     + +r+++t Gs   mG     a+G   a p+k+v+ +DGD  + m l  l t+ +++ + +   +++ g  + v         ++   + +++   +  a  Y  +a++++++eel  ++ k  +a+gp+l++ kv ++
  MMETSP1137-20121227|7683_1 443 LVVSTGVGNHQMMSCQFL-RWTTPRSIITSGSlgtMGFGLPAAIGAQVACPEKTVLLVDGDSSFNMTLNDLGTVKEHQLP-IKMAIMNDGRQQMVhvwqklffDSRIVATDNVNPDYVKLAQAYdXEAYSCESMEELPGVIDKFVNAKGPVLVDFKVLPD 600
                 455566666666666554.44566777776653337888899**************************999999866544.333455555555441111111123344444555555556666724799************************9999765 PP

>> TIGR03846  sulfopy_beta: sulfopyruvate decarboxylase, beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.1   5.1e-06    0.0019      41      86 ..     474     519 ..     472     530 .. 0.89

  Alignments for each domain:
  == domain 1    score: 16.0 bits;  conditional E-value: 5.1e-06
   TIGR03846  41 lGsmglassiglGlalasedrkvividGDGsllmnlgvLatiaaek 86 
                 lG+mg   + ++G  +a ++++v+ +dGD s  m l+ L t+ +++
  MMETSP1137-20121227|7683_1 474 LGTMGFGLPAAIGAQVACPEKTVLLVDGDSSFNMTLNDLGTVKEHQ 519
                 799*99999999999999***********************98654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (636 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       143  (0.034861); expected 82.0 (0.02)
Passed bias filter:                      139  (0.0338859); expected 82.0 (0.02)
Passed Vit filter:                        26  (0.00633837); expected 4.1 (0.001)
Passed Fwd filter:                        11  (0.00268162); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.73u 0.17s 00:00:00.90 Elapsed: 00:00:00.77
# Mc/sec: 1090.20
//
Query:       MMETSP1137-20121227|7684_1  [L=114]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (114 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        71  (0.0173086); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.15s 00:00:00.30 Elapsed: 00:00:00.66
# Mc/sec: 227.98
//
Query:       MMETSP1137-20121227|7685_1  [L=241]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (241 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        56  (0.0136519); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.15s 00:00:00.36 Elapsed: 00:00:00.27
# Mc/sec: 1178.12
//
Query:       MMETSP1137-20121227|7686_1  [L=176]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-09   34.1   1.8    1.7e-09   33.8   1.3    1.0  1  TIGR02169 SMC_prok_A: chromosome segregation protein SMC
    2.8e-09   33.1   2.1    3.4e-09   32.8   1.5    1.0  1  TIGR02168 SMC_prok_B: chromosome segregation protein SMC
    8.4e-06   23.0   2.4    1.2e-05   22.5   1.7    1.1  1  TIGR00996 Mtu_fam_mce: virulence factor Mce family protein
    3.1e-05   20.5   7.8    3.9e-05   20.2   5.4    1.1  1  TIGR03545 TIGR03545: TIGR03545 family protein
    0.00016   18.4   0.9    0.00019   18.1   0.6    1.2  1  TIGR03017 EpsF: chain length determinant protein EpsF
    0.00028   17.1   1.7    0.00036   16.7   1.2    1.1  1  TIGR03007 pepcterm_ChnLen: polysaccharide chain length determinant protein, PEP-CTERM locus subfamily
    0.00034   17.2   1.1    0.00049   16.7   0.8    1.2  1  TIGR02231 TIGR02231: conserved hypothetical protein
    0.00045   17.1   3.5    0.00056   16.8   2.4    1.1  1  TIGR00634 recN: DNA repair protein RecN
     0.0005   16.5   1.0    0.00057   16.3   0.7    1.1  1  TIGR03185 DNA_S_dndD: DNA sulfur modification protein DndD
    0.00058   16.8   3.5     0.0019   15.1   0.4    1.8  2  TIGR01843 type_I_hlyD: type I secretion membrane fusion protein, HlyD family
     0.0014   16.2   4.3      0.017   12.7   3.0    2.0  1  TIGR00636 PduO_Nterm: ATP:cob(I)alamin adenosyltransferase
      0.002   16.1   4.6       0.16    9.9   0.5    2.7  2  TIGR00293 TIGR00293: prefoldin, alpha subunit
      0.002   14.5   0.7     0.0023   14.3   0.5    1.1  1  TIGR03319 YmdA_YtgF: conserved hypothetical protein YmdA/YtgF
     0.0024   14.0   3.6     0.0028   13.8   2.5    1.1  1  TIGR00344 alaS: alanine--tRNA ligase
     0.0029   13.2   0.1     0.0036   12.9   0.1    1.0  1  TIGR02680 TIGR02680: TIGR02680 family protein
     0.0043   12.6   6.2     0.0062   12.1   4.3    1.2  1  TIGR00606 rad50: rad50
     0.0067   14.7   1.4      0.016   13.4   1.0    1.7  1  TIGR02473 flagell_FliJ: flagellar export protein FliJ
  ------ inclusion threshold ------
      0.011   13.0   0.7      0.019   12.2   0.5    1.4  1  TIGR02780 TrbJ_Ti: P-type conjugative transfer protein TrbJ
      0.019   12.7   4.5      0.025   12.3   3.1    1.1  1  TIGR03513 GldL_gliding: gliding motility-associated protein GldL
       0.02   12.9   2.0        2.3    6.3   0.3    3.1  2  TIGR03930 WXG100_ESAT6: WXG100 family type VII secretion target
      0.022   13.0   0.1        1.6    6.9   0.0    2.1  2  TIGR02559 HrpB7: type III secretion protein HrpB7
      0.028   12.3   6.6       0.76    7.6   0.6    2.8  2  TIGR02338 gimC_beta: prefoldin, beta subunit
      0.032   11.4   5.8      0.074   10.2   4.0    1.6  1  TIGR02971 heterocyst_DevB: ABC exporter membrane fusion protein, DevB family
      0.043   10.7   7.3       0.22    8.4   5.0    1.8  1  TIGR01010 BexC_CtrB_KpsE: polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family
      0.056   10.5   8.4       0.29    8.2   6.0    1.7  1  TIGR03752 conj_TIGR03752: integrating conjugative element protein, PFL_4705 family
      0.066   10.5   7.6       0.18    9.1   5.3    1.7  1  TIGR02553 SipD_IpaD_SspD: type III effector protein IpaD/SipD/SspD
      0.071    9.9   8.8       0.27    8.0   6.0    1.6  1  TIGR00414 serS: serine--tRNA ligase
      0.073   11.2   4.0       0.13   10.4   0.2    2.3  2  TIGR04166 methano_MtrB: tetrahydromethanopterin S-methyltransferase, subunit B
        0.1   11.4   2.2        2.3    7.1   0.2    2.3  2  TIGR00743 TIGR00743: conserved hypothetical protein
       0.35    6.9  10.8       0.03   10.4   3.7    1.7  2  TIGR00833 actII: transport protein
       0.61    8.1   6.3       0.87    7.6   1.3    2.0  2  TIGR02894 DNA_bind_RsfA: transcription factor, RsfA family
        0.7    7.7   5.4        2.8    5.8   0.1    3.0  3  TIGR01149 mtrG: tetrahydromethanopterin S-methyltransferase, subunit G


Domain annotation for each model (and alignments):
>> TIGR02169  SMC_prok_A: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.8   1.3   1.3e-11   1.7e-09     689     789 ..      59     159 ..      41     171 .. 0.45

  Alignments for each domain:
  == domain 1    score: 33.8 bits;  conditional E-value: 1.3e-11
   TIGR02169 689 releslqselrriekrldelssklsdaekkieeiekeleqleeeeeklkerleeleeklseleeeleekkeelkeleaeieeleeklaklkealedleael 789
                  +l+++  +l+++++ l+e++s l++ +  ++ ++++l++++++ +++k +l +++++l +l+ +++ +k+ +k +++++ e + +++++k a+ dl++  
  MMETSP1137-20121227|7686_1  59 GSLSRVETDLNEVKSDLNEVKSXLNEVKSDLNXVKSDLNEVKSDLNEVKSNLVNVQSNLTQLQSDMTMVKSDMKGVQSDMREVKSDVKEVKSAVSDLKEAN 159
                 33444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444332 PP

>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.8   1.5   2.6e-11   3.4e-09     774     877 ..      63     166 ..      45     174 .. 0.46

  Alignments for each domain:
  == domain 1    score: 32.8 bits;  conditional E-value: 2.6e-11
   TIGR02168 774 eaeeelkeaeeeieeleaeieqlkeelkalrealseleaeltelkeeaaekeerleslekeiaalekeleeleeqieeleeeiesleaeieeleeeleeleeel 877
                   e+ l+e++++++e+++ +++ k++l+  +++l+e++++l+e k+++ +++++l++l++++ +++  ++ +++ ++e + +++++++++++l+e+ + l++ l
  MMETSP1137-20121227|7686_1  63 RVETDLNEVKSDLNEVKSXLNEVKSDLNXVKSDLNEVKSDLNEVKSNLVNVQSNLTQLQSDMTMVKSDMKGVQSDMREVKSDVKEVKSAVSDLKEANNSLTKML 166
                 33334444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 PP

>> TIGR00996  Mtu_fam_mce: virulence factor Mce family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.5   1.7     9e-08   1.2e-05     171     284 ..      56     168 ..      50     174 .. 0.95

  Alignments for each domain:
  == domain 1    score: 22.5 bits;  conditional E-value: 9e-08
   TIGR00996 171 elleglaqltaalnerdedigelidnlnrvldvladasdqldrlldnlatliaqladrsdaLddalaalsalsaqvrdllaenrpnLaqalanLasvltllvdyspeleqlLkl 284
                 +++ +l+++ ++lne   d++e+   ln v + l   + +l+++  +l+++ + l + +++L ++ ++++ + ++++++ ++  ++++ ++++ +s ++ l++++++l+++L  
  MMETSP1137-20121227|7686_1  56 AVIGSLSRVETDLNEVKSDLNEVKSXLNEVKSDLNXVKSDLNEVKSDLNEVKSNLVNVQSNLTQLQSDMTMVKSDMKGVQSDM-REVKSDVKEVKSAVSDLKEANNSLTKMLDG 168
                 57899*****************************************************************************9.679**********************99975 PP

>> TIGR03545  TIGR03545: TIGR03545 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   5.4     3e-07   3.9e-05     166     260 ..      68     159 ..      48     170 .. 0.73

  Alignments for each domain:
  == domain 1    score: 20.2 bits;  conditional E-value: 3e-07
   TIGR03545 166 aeeiekslkakqakwkkrkksLpn.kqdleeykkrlealkeadiknpkelqkaleeldkvkkeikadkqkiksakndlqkdlkqlkaqlaelkkap 260
                 ++e++ +l++++  ++++k +L   k dl+e+k  l+++k +    + ++q+ l++l+     +k d + ++s   +++ d+k++k+ + +lk+a 
  MMETSP1137-20121227|7686_1  68 LNEVKSDLNEVKSXLNEVKSDLNXvKSDLNEVKSDLNEVKSN----LVNVQSNLTQLQSDMTMVKSDMKGVQSDMREVKSDVKEVKSAVSDLKEAN 159
                 689999999999999999999999999999999999999988....33444555555555555555555566666666666666666666666664 PP

>> TIGR03017  EpsF: chain length determinant protein EpsF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.6   1.4e-06   0.00019     288     385 ..      65     158 ..      22     173 .. 0.53

  Alignments for each domain:
  == domain 1    score: 18.1 bits;  conditional E-value: 1.4e-06
   TIGR03017 288 kaelaslkskLnaeikkvtssvetssrvakqreaelkealekqkakvlelkrqrdelsvLqkdveaaqrafdaalqrysqtrleaksvqtdisiLnpa 385
                 +++l+++ks Ln e+k+  + v++  +  k   +e+k+ l++ k+++++++++   l+ Lq d+ + + ++ ++   +   + + k v++ +s L+ a
  MMETSP1137-20121227|7686_1  65 ETDLNEVKSDLN-EVKSXLNEVKSDLNXVKSDLNEVKSDLNEVKSNLVNVQSN---LTQLQSDMTMVKSDMKGVQSDMREVKSDVKEVKSAVSDLKEA 158
                 444444444443.3444444444444444444444444444444444444332...223333333333333333333333333333333333333333 PP

>> TIGR03007  pepcterm_ChnLen: polysaccharide chain length determinant protein, PEP-CTERM locus subfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   1.2   2.8e-06   0.00036     181     293 ..      47     161 ..      44     169 .. 0.80

  Alignments for each domain:
  == domain 1    score: 16.7 bits;  conditional E-value: 2.8e-06
   TIGR03007 181 enrLkaFkqenvgilpdqegdyy...eelkeaeeeLeearlelkeakaqrdalkrqlageepvllaeesvasseldsriealekqLdeLrlrYtdkhPdviavkreiaeLeerkee 293
                    +k+F+   +g l+  e+d+    ++l+e +  L+e++ +l+  k  ++ +k+ l++ +  l    ++  ++l+s + +++  ++ ++    +   dv +vk+ +  L+e +++
  MMETSP1137-20121227|7686_1  47 STDMKDFQDAVIGSLSRVETDLNevkSDLNEVKSXLNEVKSDLNXVKSDLNEVKSDLNEVKSNLVNV-QSNLTQLQSDMTMVKSDMKGVQSDMREVKSDVKEVKSAVSDLKEANNS 161
                 5678999999999999999876422268888888888888888888888888888888765554444.56788999999999999**********99*******999999998655 PP

>> TIGR02231  TIGR02231: conserved hypothetical protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.8   3.8e-06   0.00049      70     169 ..      65     161 ..      36     169 .. 0.65

  Alignments for each domain:
  == domain 1    score: 16.7 bits;  conditional E-value: 3.8e-06
   TIGR02231  70 seriaelrkkireleaeledledradalkklkkfledirekltepikdlkreeadlkelkklldfaeseieklleedreveakirelekklselenelra 169
                 ++ ++e ++ ++e++  l+++++  + +k     l+++++ l e +++l+  + +l++l++ + +++s ++ +++  rev++  +e++  +s l++  + 
  MMETSP1137-20121227|7686_1  65 ETDLNEVKSDLNEVKSXLNEVKSDLNXVK---SDLNEVKSDLNEVKSNLVNVQSNLTQLQSDMTMVKSDMKGVQSDMREVKSDVKEVKSAVSDLKEANNS 161
                 33444444444444444444444443333...44667777777777777778888888888888888888888888888888888888888888855554 PP

>> TIGR00634  recN: DNA repair protein RecN
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   2.4   4.4e-06   0.00056     242     358 ..      50     165 ..      38     172 .. 0.63

  Alignments for each domain:
  == domain 1    score: 16.8 bits;  conditional E-value: 4.4e-06
   TIGR00634 242 advqesalleslaearaelaseidaslkelaekveealteveeatrelreyldeleadperlneieerlaeikrLkrKygasveevleyaekikeeldqLedseesleaLeeevekl 358
                 +   ++a++ sl +++ +l++ + + l+e++  ++e+   +  + ++l+e+ ++l+  +++l +++  l++++      + ++++v    +++k ++++++++ ++l++ +++++k+
  MMETSP1137-20121227|7686_1  50 MKDFQDAVIGSLSRVETDLNE-VKSDLNEVKSXLNEVKSDLNXVKSDLNEVKSDLNEVKSNLVNVQSNLTQLQSDMTMVKSDMKGVQSDMREVKSDVKEVKSAVSDLKEANNSLTKM 165
                 444555556666666666555.66666666666666666666666666666666666666666666666666666666666666666666666666666666666666666665554 PP

>> TIGR03185  DNA_S_dndD: DNA sulfur modification protein DndD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.7   4.4e-06   0.00057     383     479 ..      69     159 ..      23     170 .. 0.40

  Alignments for each domain:
  == domain 1    score: 16.3 bits;  conditional E-value: 4.4e-06
   TIGR03185 383 ekvkrekqdaksqLlkeleeleeelaeldkkietvpdeekvaelleeleeaeeevakseveieektekleelkeaieelrkelkektkqkedaeele 479
                 ++vk ++++    + + l+e++ +l+ ++  +++v +   ++e+ ++l + + ++++++  +   ++ ++  +  + e++  +ke +  + d +e++
  MMETSP1137-20121227|7686_1  69 NEVKSDLNE----VKSXLNEVKSDLNXVKSDLNEVKS--DLNEVKSNLVNVQSNLTQLQSDMTMVKSDMKGVQSDMREVKSDVKEVKSAVSDLKEAN 159
                 222222221....111112222222222222222211..2222222222222222222222222222222222222222222222222222222222 PP

>> TIGR01843  type_I_hlyD: type I secretion membrane fusion protein, HlyD family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.4   1.5e-05    0.0019     211     270 ..      61     119 ..      41     134 .. 0.49
   2 !    9.5   0.7   0.00073     0.094     203     266 ..     102     164 ..      98     174 .. 0.66

  Alignments for each domain:
  == domain 1    score: 15.1 bits;  conditional E-value: 1.5e-05
   TIGR01843 211 laeleaeleklkaeldeleeklqeleqkfreevseelreaqarlaeleeelskardrlqr 270
                 l + e +l+++k++l+e++  l+e+++++ + v+  l+e++++l+e++ +l++++++l++
  MMETSP1137-20121227|7686_1  61 LSRVETDLNEVKSDLNEVKSXLNEVKSDL-NXVKSDLNEVKSDLNEVKSNLVNVQSNLTQ 119
                 44444444444444444444444444433.334444444444444444444444443332 PP

  == domain 2    score: 9.5 bits;  conditional E-value: 0.00073
   TIGR01843 203 eraelqgelaeleaeleklkaeldeleeklqeleqkfreevseelreaqarlaeleeelskard 266
                  ++e++++l + +++l++l+++++ ++  ++++++++r ev+  ++e+++ +++l+e+ +++++
  MMETSP1137-20121227|7686_1 102 DLNEVKSNLVNVQSNLTQLQSDMTMVKSDMKGVQSDMR-EVKSDVKEVKSAVSDLKEANNSLTK 164
                 55667777777777777777777777777777766654.5666677777777777766666554 PP

>> TIGR00636  PduO_Nterm: ATP:cob(I)alamin adenosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.7   3.0   0.00013     0.017      31     101 ..      82     150 ..      22     168 .. 0.60

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 0.00013
   TIGR00636  31 vDElnsflGvalsklkeeelkeelekiqndlfdlgadlatksekkkiteekvkfleeridkyreeleelkk 101
                 ++E+ s l  ++s    +e+k++l++++ +l ++ ++l+  ++  ++ ++++k +++ + +++ +++e+k+
  MMETSP1137-20121227|7686_1  82 LNEVKSDLNXVKS--DLNEVKSDLNEVKSNLVNVQSNLTQLQSDMTMVKSDMKGVQSDMREVKSDVKEVKS 150
                 3333333333333..23444555555555555555555544444455555555555555555555555544 PP

>> TIGR00293  TIGR00293: prefoldin, alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.9   0.5    0.0012      0.16      10      56 ..      70     115 ..      51     118 .. 0.57
   2 !    7.3   0.2    0.0083       1.1       2      44 ..     118     160 ..     110     171 .. 0.63

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 0.0012
   TIGR00293  10 qlqeevealqaeiaalraliaeleeaietleslkka..egkevLVpvga 56 
                 ++++ ++ ++   + l+++++ l+ +++ l+++k++  e k  LV+v +
  MMETSP1137-20121227|7686_1  70 EVKSDLNEVK---SXLNEVKSDLNXVKSDLNEVKSDlnEVKSNLVNVQS 115
                 3333333322...234444555566666666666666666666777765 PP

  == domain 2    score: 7.3 bits;  conditional E-value: 0.0083
   TIGR00293   2 qqlaaelqqlqeevealqaeiaalraliaeleeaietleslkk 44 
                  ql+  +  +++ +  +q+++ ++++ ++e+++a + l++ + 
  MMETSP1137-20121227|7686_1 118 TQLQSDMTMVKSDMKGVQSDMREVKSDVKEVKSAVSDLKEANN 160
                 4555566666666666666666666666666666665555444 PP

>> TIGR03319  YmdA_YtgF: conserved hypothetical protein YmdA/YtgF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.5   1.8e-05    0.0023      40     136 ..      70     164 ..      29     174 .. 0.48

  Alignments for each domain:
  == domain 1    score: 14.3 bits;  conditional E-value: 1.8e-05
   TIGR03319  40 eakkeaeakkkealleakeevkklreelekelkerrkelqklekrlkqkeekldrkkeklekkeeelekkekeleekekeleekeeeleellkeqke 136
                 e k + + + k+ l e+k++++ ++++l+ e+k+  +e++++   ++++ ++l+++++ +++  + +++  +e+++  ke+++  ++l+e  ++ ++
  MMETSP1137-20121227|7686_1  70 EVKSDLN-EVKSXLNEVKSDLNXVKSDLN-EVKSDLNEVKSNLVNVQSNLTQLQSDMTMVKSDMKGVQSDMREVKSDVKEVKSAVSDLKEANNSLTK 164
                 2222222.223334444444444444432.3333334444444444444444444444444444444444444444444444444444444444444 PP

>> TIGR00344  alaS: alanine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   2.5   2.2e-05    0.0028     703     793 ..      74     162 ..      38     173 .. 0.54

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 2.2e-05
   TIGR00344 703 eekkLkeladkLkkeleelakkveklkeelkalrkeleslkkkiakqkaeelkekaetieelkvlvekvdakekkelkeladelkekeeav 793
                 + +++k   +++k++l+ +++  +++k+ l +++ +l ++++++++++ ++++   +++++++  + +v+  + ke+k+++ +lke ++++
  MMETSP1137-20121227|7686_1  74 DLNEVKSXLNEVKSDLNXVKSDLNEVKSDLNEVKSNLVNVQSNLTQLQ-SDMTMVKSDMKGVQSDMREVKS-DVKEVKSAVSDLKEANNSL 162
                 333333333333444444444444444455555555555554433332.3334444455555555555555.5555555555555554433 PP

>> TIGR02680  TIGR02680: TIGR02680 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.9   0.1   2.8e-05    0.0036     266     361 ..      63     157 ..      46     169 .. 0.48

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 2.8e-05
   TIGR02680 266 rratelrsAqkqldelsrdlgeakdelekareeereldartealeaeaealrtrleaLqeseayqkakeleraraeaealqkaaaeaekavaeaes 361
                 r  t+l++ ++ l+e++  l+e k +l+ ++  ++e+++++++++ ++   +++l +Lq++  + k   ++  +++ ++ +++++e + av + ++
  MMETSP1137-20121227|7686_1  63 RVETDLNEVKSDLNEVKSXLNEVKSDLNXVKSDLNEVKSDLNEVKSNLVNVQSNLTQLQSDMTMVKSD-MKGVQSDMREVKSDVKEVKSAVSDLKE 157
                 33445555555555555555555555555555555555555555555555555555555555554432.233333333333333333333333222 PP

>> TIGR00606  rad50: rad50
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.1   4.3   4.8e-05    0.0062     824     917 ..      61     155 ..      47     167 .. 0.73

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 4.8e-05
   TIGR00606 824 vqevrkekeekdekldkvvskielnrkliedrqeqiqhlksklnelkseklqlsealqrrqqleeqlvelskevqslireikdakeev.sPlett 917
                 + +v+ + +e +  l++v s  ++ +   +  + +++ +ks lne+ks+ +++  +l + q     ++  +k vqs +re+k   +ev s     
  MMETSP1137-20121227|7686_1  61 LSRVETDLNEVKSDLNEVKSXLNEVKSDLNXVKSDLNEVKSDLNEVKSNLVNVQSNLTQLQSDMTMVKSDMKGVQSDMREVKSDVKEVkSAVSDL 155
                 55666777777778888888887777777777777888999999999999999999999998888888888999999999875544440333333 PP

>> TIGR02473  flagell_FliJ: flagellar export protein FliJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   1.0   0.00013     0.016      16      83 ..      83     151 ..      60     167 .. 0.43

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 0.00013
   TIGR02473  16 eqakselakaqaeferleqqLqqlekereeyeqqanekvqsg.tsaaelsnlqrfirqldeaieqqqqe 83 
                 +++ks+l+ + ++++++ ++L++ +++  ++++++ + ++   +  ++++ +q  +r  ++++++ + +
  MMETSP1137-20121227|7686_1  83 NEVKSDLNXVKSDLNEVKSDLNEVKSNLVNVQSNLTQLQSDMtMVKSDMKGVQSDMREVKSDVKEVKSA 151
                 334444444444444444444444444444444433333322233334444444444444444444444 PP

>> TIGR02780  TrbJ_Ti: P-type conjugative transfer protein TrbJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.5   0.00015     0.019      17     151 ..      28     162 ..      17     169 .. 0.71

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 0.00015
   TIGR02780  17 llavsiaklpapavapvt.vvncanfsqqileaaesveqllnqiqqlqnqiqryeNqlkNtasLpaniwnklesslkkltniisqaqalaysvanlddefsqkyqdaasyaassgsdrqnlsdayarwaqttrdaa 151
                 l+a +    + pa ++vt   +   f  +++ ++  ve+ ln ++   n++++  N +k   +  ++++n+++s+l+++++ + ++q+   + ++  ++ ++  ++++s     +sd + +++a ++  +++++ +
  MMETSP1137-20121227|7686_1  28 LIARIGETIGSPALVGVTsSTDMKDFQDAVIGSLSRVETDLNEVKSDLNEVKSXLNEVKSDLNXVKSDLNEVKSDLNEVKSNLVNVQSNLTQLQSDMTMVKSDMKGVQSDMREVKSDVKEVKSAVSDL-KEANNSL 162
                 55555556666777755414577778888888999999999999999999999999999999999999999999999888888888775555555557777777777776677777777777776666.5555555 PP

>> TIGR03513  GldL_gliding: gliding motility-associated protein GldL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   3.1   0.00019     0.025      79     182 ..      52     157 ..      39     170 .. 0.83

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 0.00019
   TIGR03513  79 eepeaarllsqkLdamlkeakvdaellaslgngik...neekisdlseaidklaeatealegaaktlakmtdsyakqkedqeglrldaqkYieqleklaknleaLNe 182
                 + ++a+ +   ++++ l+e k d + ++s +n +k   n    sdl e    l e+ ++l  +   l+++   +   k+d++g++ d ++   ++++++  ++ L e
  MMETSP1137-20121227|7686_1  52 DFQDAVIGSLSRVETDLNEVKSDLNEVKSXLNEVKsdlN-XVKSDLNEVKSDLNEVKSNLVNVQSNLTQLQSDMTMVKSDMKGVQSDMREVKSDVKEVKSAVSDLKE 157
                 55667777778899999999999999****999996443.4458999999999**************999999999999*****99999888888888888887754 PP

>> TIGR03930  WXG100_ESAT6: WXG100 family type VII secretion target
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   0.3     0.018       2.3      47      69 ..      97     119 ..      47     134 .. 0.49
   2 ?    3.3   0.0      0.15        20       2      27 ..     141     166 ..     126     171 .. 0.46

  Alignments for each domain:
  == domain 1    score: 6.3 bits;  conditional E-value: 0.018
   TIGR03930  47 qafdaefaewkpaaerlneaLqe 69 
                 ++  +  +e+k+++ +++ +L++
  MMETSP1137-20121227|7686_1  97 NEVKSDLNEVKSNLVNVQSNLTQ 119
                 12223333333333333333333 PP

  == domain 2    score: 3.3 bits;  conditional E-value: 0.15
   TIGR03930   2 ikvdpeeleqaAkrfqktaqelqqel 27 
                 +k d +e+++a +++++++++l+ +l
  MMETSP1137-20121227|7686_1 141 VKSDVKEVKSAVSDLKEANNSLTKML 166
                 23333334444444444444444333 PP

>> TIGR02559  HrpB7: type III secretion protein HrpB7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   0.0     0.013       1.6      63     125 ..      36      98 ..      27     108 .. 0.58
   2 ?    4.2   0.1     0.087        11      20      70 ..     113     163 ..     103     168 .. 0.86

  Alignments for each domain:
  == domain 1    score: 6.9 bits;  conditional E-value: 0.013
   TIGR02559  63 atgtasltieallacrayrdvleeelgaaeqavaalraalqakedalaakkrkiaRldaqidv 125
                  ++ a +++   + ++ ++d++++ l  +e ++  ++  l++ +  l+++k  +   ++ ++ 
  MMETSP1137-20121227|7686_1  36 IGSPALVGVTSSTDMKDFQDAVIGSLSRVETDLNEVKSDLNEVKSXLNEVKSDLNXVKSDLNE 98 
                 555555566666666666666666666666666666666666666666666655555554444 PP

  == domain 2    score: 4.2 bits;  conditional E-value: 0.087
   TIGR02559  20 lraeleelraaleeadaelaekesqaeakedrldrhaarlddlatgtaslt 70 
                 ++ +l +l+  +  ++  ++  +s ++  + ++++ + ++ dl  +++slt
  MMETSP1137-20121227|7686_1 113 VQSNLTQLQSDMTMVKSDMKGVQSDMREVKSDVKEVKSAVSDLKEANNSLT 163
                 678888899999999999999999999999999999999999999999887 PP

>> TIGR02338  gimC_beta: prefoldin, beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   0.7     0.016         2      11      42 ..      74     105 ..      46     114 .. 0.60
   2 ?    7.6   0.6    0.0059      0.76       4      46 ..     112     158 ..     108     166 .. 0.61

  Alignments for each domain:
  == domain 1    score: 6.3 bits;  conditional E-value: 0.016
   TIGR02338  11 qlqqlqqqlqavltqkqqveaelkevekaLee 42 
                  l++++  l++v    + v ++l+ev+  L+e
  MMETSP1137-20121227|7686_1  74 DLNEVKSXLNEVKSDLNXVKSDLNEVKSDLNE 105
                 34455555555555555555555555555555 PP

  == domain 2    score: 7.6 bits;  conditional E-value: 0.0059
   TIGR02338   4 evqeqlaqlqq....lqqqlqavltqkqqveaelkevekaLeelekl 46 
                 +vq++l+qlq+    ++ +++ v     +v +++kev+ a+++l++ 
  MMETSP1137-20121227|7686_1 112 NVQSNLTQLQSdmtmVKSDMKGVQSDMREVKSDVKEVKSAVSDLKEA 158
                 56666666664333345555666666666666666666666666665 PP

>> TIGR02971  heterocyst_DevB: ABC exporter membrane fusion protein, DevB family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   4.0   0.00058     0.074     101     202 ..      56     162 ..      30     166 .. 0.64

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 0.00058
   TIGR02971 101 aqqaklnrleaeletaqrelerykslkkdgavsesaldskklkleeaeeeleeakasls...eqleeekaalasiaeevrel..dvklvqaevk...sakeavkkaeall 202
                 a  + l r+e +l++ + +l+  ks  ++     s+l+ +k  l+e++  l+e k +l     +l + +  +  ++ +++ +  d+++v+ +vk   sa++ +k+a++ l
  MMETSP1137-20121227|7686_1  56 AVIGSLSRVETDLNEVKSDLNEVKSXLNEVK---SDLNXVKSDLNEVKSDLNEVKSNLVnvqSNLTQLQSDMTMVKSDMKGVqsDMREVKSDVKevkSAVSDLKEANNSL 162
                 5567888999999999988888888887766...6666666666666666666666665555444444555555555554331155555554442227777777776655 PP

>> TIGR01010  BexC_CtrB_KpsE: polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   5.0    0.0017      0.22     175     274 ..      64     163 ..      58     170 .. 0.63

  Alignments for each domain:
  == domain 1    score: 8.4 bits;  conditional E-value: 0.0017
   TIGR01010 175 aEeevkeAeerlkaakaellkyriknkvldlkaqsevqlslistleselirvqaelaqlksitkednPqvvslqariksLkkeideqrkklsgkq..ndsls 274
                 +E++++e + +l++ k+ l + +   + +   +  ev++  +++++s+l++vq++l ql+s +      ++ +q  ++ +k +++e ++ +s  +  n+sl+
  MMETSP1137-20121227|7686_1  64 VETDLNEVKSDLNEVKSXLNEVKSDLNXVKS-DLNEVKSD-LNEVKSNLVNVQSNLTQLQSDMTMVKSDMKGVQSDMREVKSDVKEVKSAVSDLKeaNNSLT 163
                 6788888888888888888887766555432.23344444.4788888888888888888777766666666666666666666666666654322244444 PP

>> TIGR03752  conj_TIGR03752: integrating conjugative element protein, PFL_4705 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   6.0    0.0022      0.29      51     153 ..      43     145 ..      30     165 .. 0.62

  Alignments for each domain:
  == domain 1    score: 8.2 bits;  conditional E-value: 0.0022
   TIGR03752  51 giegdtp.edtlrtlvaelkelrkelaklekeNeklkkenerlkkreesvderiqqaleaekkelkkekeqlkeeqakleelldelqkkledvaaekesseedl 153
                 g+  +t  +d    ++++l+ ++++l++++++ +++k+  +++k++ + v++ ++ ++++  +e+k++  +++++ ++l+++++ +++ +++v++  ++ ++d+
  MMETSP1137-20121227|7686_1  43 GVTSSTDmKDFQDAVIGSLSRVETDLNEVKSDLNEVKSXLNEVKSDLNXVKSDLN-EVKSDLNEVKSNLVNVQSNLTQLQSDMTMVKSDMKGVQSDMREVKSDV 145
                 5555554134444577777777777777777777777777777777777776654.455556666666666666666666666666666665555444444443 PP

>> TIGR02553  SipD_IpaD_SspD: type III effector protein IpaD/SipD/SspD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   5.3    0.0014      0.18     161     228 ..      83     151 ..      39     172 .. 0.59

  Alignments for each domain:
  == domain 1    score: 9.1 bits;  conditional E-value: 0.0014
   TIGR02553 161 nkvkldvdalkaaleklvkdfs....nldnkkavlfpaqsdsgiqv....akeadarkWakelglpdscvkkaasG 228
                 n+vk d + +k++l++++ d++    nl+n ++ l   qsd ++      + ++d+r  ++++ + +s        
  MMETSP1137-20121227|7686_1  83 NEVKSDLNXVKSDLNEVKSDLNevksNLVNVQSNLTQLQSDMTMVKsdmkGVQSDMREVKSDVKEVKS-------A 151
                 55566666666666666666655666778999999999999888541111334555444433333333.......2 PP

>> TIGR00414  serS: serine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   6.0    0.0021      0.27      60     122 ..      71     133 ..      44     163 .. 0.37

  Alignments for each domain:
  == domain 1    score: 8.0 bits;  conditional E-value: 0.0021
   TIGR00414  60 igkkkaekkdkieelkkelkelkeeleeleaelkeleeeleekllkipnlvaesvpvgkdeed 122
                 ++++ +e k+ ++e+k +l+  k++l+e++++l+e++++l ++ +++ +l ++ + v +d + 
  MMETSP1137-20121227|7686_1  71 VKSDLNEVKSXLNEVKSDLNXVKSDLNEVKSDLNEVKSNLVNVQSNLTQLQSDMTMVKSDMKG 133
                 222222222222223333333333333333333333333333333333333332222222221 PP

>> TIGR04166  methano_MtrB: tetrahydromethanopterin S-methyltransferase, subunit B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.2      0.43        55      28      54 ..      64      90 ..      44     113 .. 0.61
   2 ?   10.4   0.2     0.001      0.13       3      56 ..     118     169 ..     116     174 .. 0.88

  Alignments for each domain:
  == domain 1    score: 2.0 bits;  conditional E-value: 0.43
   TIGR04166 28 vllsldevnekidkLekladdlvnsLd 54
                v  +l+ev+  ++++    +++ + L+
  MMETSP1137-20121227|7686_1 64 VETDLNEVKSDLNEVKSXLNEVKSDLN 90
                344555555555555555555554444 PP

  == domain 2    score: 10.4 bits;  conditional E-value: 0.001
   TIGR04166   3 vkilpelnlvldvetGvvaeeredvvllsldevnekidkLekladdlvnsLdPr 56 
                 +++  ++ +v   ++Gv +++re  v+ +++ev+ ++  L ++ + l ++Ld+ 
  MMETSP1137-20121227|7686_1 118 TQLQSDMTMVKSDMKGVQSDMRE--VKSDVKEVKSAVSDLKEANNSLTKMLDGV 169
                 67778888999999999999999..999***********************986 PP

>> TIGR00743  TIGR00743: conserved hypothetical protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   0.2     0.018       2.3      29      80 ..      73     125 ..      44     127 .. 0.72
   2 ?    6.9   0.2      0.02       2.6      31      73 ..     110     152 ..     102     163 .. 0.77

  Alignments for each domain:
  == domain 1    score: 7.1 bits;  conditional E-value: 0.018
   TIGR00743  29 akvsrvyateaeaeevlakltekardvesepceikseitevedg.veLdadft 80 
                 +++++v +  +e ++ l+ ++    +v+s+  e+ks++++v+ +  +L+ d+t
  MMETSP1137-20121227|7686_1  73 SDLNEVKSXLNEVKSDLNXVKSDLNEVKSDLNEVKSNLVNVQSNlTQLQSDMT 125
                 45555556666777777777777888888888888888877644156777666 PP

  == domain 2    score: 6.9 bits;  conditional E-value: 0.02
   TIGR00743  31 vsrvyateaeaeevlakltekardvesepceikseitevedgv 73 
                 + +v ++  + ++ +++++   + v+s+  e+ks+++ev+  v
  MMETSP1137-20121227|7686_1 110 LVNVQSNLTQLQSDMTMVKSDMKGVQSDMREVKSDVKEVKSAV 152
                 5556667778888888888888899999999999998887766 PP

>> TIGR00833  actII: transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.2      0.54        70     853     881 ..       9      37 ..       5      48 .. 0.72
   2 ?   10.4   3.7   0.00023      0.03     579     657 ..      80     158 ..      44     172 .. 0.65

  Alignments for each domain:
  == domain 1    score: -0.8 bits;  conditional E-value: 0.54
   TIGR00833 853 aagLvfagtmlaLvaasllaiaqvGvtvg 881
                 +  ++f+   +a+ a+ ++ ia +G t+g
  MMETSP1137-20121227|7686_1   9 SNPVIFGSVCAAIGALGSTLIARIGETIG 37 
                 55677888888888888888888888887 PP

  == domain 2    score: 10.4 bits;  conditional E-value: 0.00023
   TIGR00833 579 ddvvevaakladevgdlartvatldsalkqvssllkaldglrtklaqmresaagvadllneLsDyvktlgkvlgeaagv 657
                   + ev+  l+ +  dl++  ++l++  ++++ +   l  l++ +  +++ + gv+  + e+   vk++ ++  + +++
  MMETSP1137-20121227|7686_1  80 SXLNEVKSDLNXVKSDLNEVKSDLNEVKSNLVNVQSNLTQLQSDMTMVKSDMKGVQSDMREVKSDVKEVKSAVSDLKEA 158
                 2344555566666677777777777777777777777777777777777777777777777777777766665554444 PP

>> TIGR02894  DNA_bind_RsfA: transcription factor, RsfA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.3       0.2        25      98     140 ..      60     102 ..      47     110 .. 0.62
   2 ?    7.6   1.3    0.0068      0.87      91     149 ..     109     167 ..     100     173 .. 0.82

  Alignments for each domain:
  == domain 1    score: 2.8 bits;  conditional E-value: 0.2
   TIGR02894  98 eaeklrkekeklkeeleslqkrneeLekeleklkkkksvieed 140
                 + ++++++ +++k++l++++   +e++++l+ +k+  + ++ d
  MMETSP1137-20121227|7686_1  60 SLSRVETDLNEVKSDLNEVKSXLNEVKSDLNXVKSDLNEVKSD 102
                 4556666666666666666666666666666666666555555 PP

  == domain 2    score: 7.6 bits;  conditional E-value: 0.0068
   TIGR02894  91 nlketleeaeklrkekeklkeeleslqkrneeLekeleklkkkksvieedyetlikimd 149
                 nl + +++ ++l+++ + +k++++ +q  + e++++++++k+  s ++e  ++l k++d
  MMETSP1137-20121227|7686_1 109 NLVNVQSNLTQLQSDMTMVKSDMKGVQSDMREVKSDVKEVKSAVSDLKEANNSLTKMLD 167
                 34445567889999999999999999999999999999999999999999999988887 PP

>> TIGR01149  mtrG: tetrahydromethanopterin S-methyltransferase, subunit G
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.1      0.12        15      12      35 ..      66      89 ..      60      94 .. 0.73
   2 ?    5.8   0.1     0.022       2.8      12      38 ..      94     120 ..      91     124 .. 0.91
   3 ?   -1.6   0.0       4.3   5.6e+02      12      35 ..     129     152 ..     122     159 .. 0.62

  Alignments for each domain:
  == domain 1    score: 3.4 bits;  conditional E-value: 0.12
   TIGR01149 12 defnevkkrLDeieekvefvngEv 35
                 ++nevk+ L+e+   ++ v +++
  MMETSP1137-20121227|7686_1 66 TDLNEVKSDLNEVKSXLNEVKSDL 89
                577788888888777777776654 PP

  == domain 2    score: 5.8 bits;  conditional E-value: 0.022
   TIGR01149  12 defnevkkrLDeieekvefvngEvaqr 38 
                  ++nevk+ L+e+   + +v+++++q 
  MMETSP1137-20121227|7686_1  94 SDLNEVKSDLNEVKSNLVNVQSNLTQL 120
                 699********************9996 PP

  == domain 3    score: -1.6 bits;  conditional E-value: 4.3
   TIGR01149  12 defnevkkrLDeieekvefvngEv 35 
                  +++ v++ + e+   v  v + v
  MMETSP1137-20121227|7686_1 129 SDMKGVQSDMREVKSDVKEVKSAV 152
                 556666666666666666555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (176 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       359  (0.0875183); expected 82.0 (0.02)
Passed bias filter:                      154  (0.0375427); expected 82.0 (0.02)
Passed Vit filter:                        51  (0.012433); expected 4.1 (0.001)
Passed Fwd filter:                        32  (0.00780107); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              32  [number of targets reported over threshold]
# CPU time: 0.53u 0.16s 00:00:00.69 Elapsed: 00:00:00.67
# Mc/sec: 346.72
//
Query:       MMETSP1137-20121227|7687_1  [L=286]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (286 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        89  (0.0216967); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.17s 00:00:00.40 Elapsed: 00:00:00.70
# Mc/sec: 539.27
//
Query:       MMETSP1137-20121227|7688_1  [L=113]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.7e-19   65.6   3.4      5e-14   50.1   0.1    2.0  2  TIGR00601 rad23: UV excision repair protein Rad23
  ------ inclusion threshold ------
       0.09   10.7   1.8        1.3    7.0   0.1    2.1  2  TIGR00739 yajC: preprotein translocase, YajC subunit


Domain annotation for each model (and alignments):
>> TIGR00601  rad23: UV excision repair protein Rad23
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.1   0.1   2.4e-17     5e-14       1      69 [.       1      66 [.       1      73 [. 0.94
   2 !   16.6   0.2   3.6e-07   0.00074       1      35 [.      77     111 ..      77     112 .. 0.96

  Alignments for each domain:
  == domain 1    score: 50.1 bits;  conditional E-value: 2.4e-17
   TIGR00601  1 vkltlKtlkqqkfkidlepdetvkelKekiesekgkdayevaqqkLiyaGkiLsDdktvkeykikekdf 69
                +++ +Ktl ++++++++ep++ + ++K ki++++g   ++ +qq+Li+aGk L+D +t+++y+i+ +  
  MMETSP1137-20121227|7688_1  1 MQIFVKTLTGKTITLEVEPSDSIDNVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQKEST 66
                8999*******************************...**************************98765 PP

  == domain 2    score: 16.6 bits;  conditional E-value: 3.6e-07
   TIGR00601   1 vkltlKtlkqqkfkidlepdetvkelKekiesekg 35 
                 +++ +Ktl ++++++++ep++ + ++K ki++++g
  MMETSP1137-20121227|7688_1  77 MQIFVKTLTGKTITLEVEPSDSIDNVKAKIQDKEG 111
                 8999***************************9876 PP

>> TIGR00739  yajC: preprotein translocase, YajC subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.2      0.01        21      54      81 ..       5      32 ..       2      34 .. 0.89
   2 ?    7.0   0.1   0.00066       1.3      47      81 ..      74     108 ..      70     110 .. 0.92

  Alignments for each domain:
  == domain 1    score: 3.1 bits;  conditional E-value: 0.01
   TIGR00739 54 vtkiaentivieladntkitisknaiae 81
                v+ ++ +ti++e++++  i   k+ i++
  MMETSP1137-20121227|7688_1  5 VKTLTGKTITLEVEPSDSIDNVKAKIQD 32
                77888999***************99987 PP

  == domain 2    score: 7.0 bits;  conditional E-value: 0.00066
   TIGR00739  47 igGligtvtkiaentivieladntkitisknaiae 81 
                  gG+   v+ ++ +ti++e++++  i   k+ i++
  MMETSP1137-20121227|7688_1  74 RGGMQIFVKTLTGKTITLEVEPSDSIDNVKAKIQD 108
                 5899999***********************99987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (113 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        73  (0.0177962); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.16u 0.16s 00:00:00.32 Elapsed: 00:00:00.36
# Mc/sec: 414.30
//
Query:       MMETSP1137-20121227|7689_1  [L=216]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (216 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       139  (0.0338859); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.15s 00:00:00.35 Elapsed: 00:00:00.30
# Mc/sec: 950.32
//
Query:       MMETSP1137-20121227|7690_1  [L=213]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (213 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        86  (0.0209654); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.13s 00:00:00.33 Elapsed: 00:00:00.34
# Mc/sec: 826.87
//
Query:       MMETSP1137-20121227|7691_1  [L=515]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      8e-05   19.9   0.0    0.00012   19.4   0.0    1.2  1  TIGR00768 rimK_fam: alpha-L-glutamate ligases, RimK family


Domain annotation for each model (and alignments):
>> TIGR00768  rimK_fam: alpha-L-glutamate ligases, RimK family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.0   2.9e-08   0.00012      43     145 ..     168     280 ..     133     324 .. 0.81

  Alignments for each domain:
  == domain 1    score: 19.4 bits;  conditional E-value: 2.9e-08
   TIGR00768  43 ralaeldvvivri.........vssdrglavlraleslGveviNssqaienagdKllssalLakaglplpktlvagseeeakklieeig..fPvvlKpvfGswGklvvlvedkq 145
                 +a +++d++ivr+          s+ +  +++r l++lG++v  s++++e  g K   + ++a+ ++ l +tl++ +eee++k   +     P v+K+ +Gs G+++  ++ k+
  MMETSP1137-20121227|7691_1 168 EAMKQFDAIIVRCnpgqikadgGSQAKFDDAMRGLQKLGIQVWPSPDVMEFMGAKD-ALTKIAHLNIGLEDTLSYYDEEEFAKGFKKTMafQPRVIKQNRGSSGEGIWIIKLKN 280
                 47899999999999999887766677777899******************999996.57899999***************998877766678************9987665443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (515 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       118  (0.0287665); expected 82.0 (0.02)
Passed bias filter:                      109  (0.0265724); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.16s 00:00:00.53 Elapsed: 00:00:00.66
# Mc/sec: 1029.91
//
Query:       MMETSP1137-20121227|7692_1  [L=279]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (279 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       131  (0.0319356); expected 82.0 (0.02)
Passed bias filter:                      107  (0.0260848); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.10s 00:00:00.35 Elapsed: 00:00:00.59
# Mc/sec: 624.15
//
Query:       MMETSP1137-20121227|7693_1  [L=275]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (275 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        89  (0.0216967); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.13s 00:00:00.36 Elapsed: 00:00:00.45
# Mc/sec: 806.60
//
Query:       MMETSP1137-20121227|7694_1  [L=1293]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1293 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       111  (0.02706); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.74u 0.16s 00:00:00.90 Elapsed: 00:00:00.76
# Mc/sec: 2245.55
//
Query:       MMETSP1137-20121227|7695_1  [L=207]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.3e-34  116.5   0.6    5.3e-34  114.5   0.0    2.0  2  TIGR01126 pdi_dom: protein disulfide-isomerase domain
    4.7e-34  116.6   1.9    5.2e-34  116.4   1.3    1.1  1  TIGR01130 ER_PDI_fam: protein disulfide isomerases
    1.9e-13   48.3   0.2    4.9e-13   47.0   0.0    1.7  2  TIGR01068 thioredoxin: thioredoxin
    0.00039   17.9   0.2    0.00089   16.7   0.0    1.7  2  TIGR00385 dsbE: periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily
      0.003   15.8   0.1     0.0065   14.7   0.0    1.5  1  TIGR02200 GlrX_actino: glutaredoxin-like protein
     0.0065   12.9   0.0       0.01   12.3   0.0    1.3  1  TIGR00424 APS_reduc: 5'-adenylylsulfate reductase, thioredoxin-independent
  ------ inclusion threshold ------
      0.013   13.8   0.1      0.041   12.3   0.1    1.8  1  TIGR02196 GlrX_YruB: glutaredoxin-like protein, YruB-family
      0.014   13.3   0.0      0.052   11.5   0.0    1.9  2  TIGR00411 redox_disulf_1: redox-active disulfide protein 1
      0.042   11.7   2.3       0.07   11.0   0.7    2.0  1  TIGR00012 L29: ribosomal protein L29


Domain annotation for each model (and alignments):
>> TIGR01126  pdi_dom: protein disulfide-isomerase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  114.5   0.0   1.2e-36   5.3e-34       1     103 [.       7     109 ..       7     111 .. 0.95
   2 ?   -0.0   0.1       0.5   2.3e+02      45      80 ..     156     193 ..     141     202 .. 0.61

  Alignments for each domain:
  == domain 1    score: 114.5 bits;  conditional E-value: 1.2e-36
   TIGR01126   1 lvaenfdelvldenkdvlvefyaPWCGhCkklaPeyeklakelkkeeekvkiakvdatae.kelaskfkvsgfPtlkffkkgkkepvdyeGeReaeelvefvee 103
                 l+ ++f+e v ++ k+++++f+aPWCGhCkk+ P ++ la+e+++++ kv ia+vd+ta  k+l++k++v+gfPt+k+f+  ++e +dy+G+R++++l +f +e
  MMETSP1137-20121227|7695_1   7 LTPDTFEEQVFKSGKSAFIKFFAPWCGHCKKMKPDWDTLATEYESSD-KVLIADVDCTAAgKSLCDKYGVKGFPTIKYFNPPDEEGEDYKGGRSLSDLKKFAAE 109
                 6789****************************************865.8*********987899*************************************876 PP

  == domain 2    score: -0.0 bits;  conditional E-value: 0.5
   TIGR01126  45 keeekvkiakvdataekela..skfkvsgfPtlkffkk 80 
                 +e+++  + +++at ++++   + +k s+ P +k++k+
  MMETSP1137-20121227|7695_1 156 EEKHDTLLKELQATYKESMDkvEALKESSAPKIKLLKA 193
                 34456677788888776554113455566677766665 PP

>> TIGR01130  ER_PDI_fam: protein disulfide isomerases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  116.4   1.3   1.1e-36   5.2e-34       3     185 ..       4     182 ..       2     207 .] 0.70

  Alignments for each domain:
  == domain 1    score: 116.4 bits;  conditional E-value: 1.1e-36
   TIGR01130   3 vleltkenfddli.kenelvLveFYAPWCGHCksLaPeYekAAeelkkkspkvklakvDatee.kelaqkygvsGyPtLkifrnge.sssdYnGpReaegivkylkkqsgPaskeletvedlekllekkevvvvgvfkdldselvetflevaeklrdkfkavasssdeaalkkleakkdevvlvkk 185
                  lelt ++f++++ k+ + + ++F+APWCGHCk+++P+++  A+e ++++ kv +a vD+t+  k+l++kygv+G+Pt+k+f   + + +dY+G+R+ + + k+     gP  + + t+e+  + ++++  + + ++++  +++ e  ++  +++++k +++ ++      ++++++ d+v ++k+
  MMETSP1137-20121227|7695_1   4 TLELTPDTFEEQVfKSGKSAFIKFFAPWCGHCKKMKPDWDTLATEYESSD-KVLIADVDCTAAgKSLCDKYGVKGFPTIKYFNPPDeEGEDYKGGRSLSDLKKFA-AELGPGCS-VDTMENCSDEQKAELQTYIDMSAEDRAKMLEDLKTELKTAEEKHDTLLKEL----QATYKESMDKVEALKE 182
                 689******997747889****************************9999.**********9989*****************9877699**************96.5689*994.666666665555555555555555444444444433333333333333222....2222222222222222 PP

>> TIGR01068  thioredoxin: thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.0   0.0   1.1e-15   4.9e-13       4      77 ..      10      86 ..       7     109 .. 0.79
   2 ?   -2.0   0.0         2   9.1e+02      37      50 ..     178     191 ..     145     205 .. 0.61

  Alignments for each domain:
  == domain 1    score: 47.0 bits;  conditional E-value: 1.1e-15
   TIGR01068  4 enfeetvassdklvlvDfwAeWCgpCkmlaPvleelakeleekvkvvKlnvd...eeqeiaakygirsiPtlllfkn 77
                ++fee+v +s k + + f+A+WCg Ck + P  + la+e+e++ kv+  +vd   + +++  kyg++  Pt+  f+ 
  MMETSP1137-20121227|7695_1 10 DTFEEQVFKSGKSAFIKFFAPWCGHCKKMKPDWDTLATEYESSDKVLIADVDctaAGKSLCDKYGVKGFPTIKYFNP 86
                7899**********************************99876666666655222457899***********88864 PP

  == domain 2    score: -2.0 bits;  conditional E-value: 2
   TIGR01068  37 eelakeleekvkvv 50 
                 e l+++ + k+k++
  MMETSP1137-20121227|7695_1 178 EALKESSAPKIKLL 191
                 33333333344444 PP

>> TIGR00385  dsbE: periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0     2e-06   0.00089      46      90 ..       3      47 ..       1      57 [. 0.86
   2 ?   -2.1   0.0       1.2   5.3e+02      81      82 ..     158     159 ..     120     192 .. 0.55

  Alignments for each domain:
  == domain 1    score: 16.7 bits;  conditional E-value: 2e-06
   TIGR00385 46 aelkekvqlltaevlkkgklvLlnvwasWCptCraehplLkelak 90
                a+l+ + ++++++v+k gk   + ++a WC+ C++  p    la 
  MMETSP1137-20121227|7695_1  3 ATLELTPDTFEEQVFKSGKSAFIKFFAPWCGHCKKMKPDWDTLAT 47
                5666667788999*********************99888777775 PP

  == domain 2    score: -2.1 bits;  conditional E-value: 1.2
   TIGR00385  81 eh 82 
                  h
  MMETSP1137-20121227|7695_1 158 KH 159
                 22 PP

>> TIGR02200  GlrX_actino: glutaredoxin-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0   1.4e-05    0.0065       6      57 ..      28      83 ..      25      87 .. 0.70

  Alignments for each domain:
  == domain 1    score: 14.7 bits;  conditional E-value: 1.4e-05
   TIGR02200  6 atswCgyCaslkrtLdkdgaeYevvd..iekdeeaadyvksvnd..GnktvPtVkf 57
                 ++wCg C+++k   d    eYe  d  +  d + ++  ks+ d  G k  Pt+k+
  MMETSP1137-20121227|7695_1 28 FAPWCGHCKKMKPDWDTLATEYESSDkvLIADVDCTAAGKSLCDkyGVKGFPTIKY 83
                589********************988542344444444444443336666666666 PP

>> TIGR00424  APS_reduc: 5'-adenylylsulfate reductase, thioredoxin-independent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.3   0.0   2.3e-05      0.01     376     437 ..      24      85 ..      14     107 .. 0.75

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 2.3e-05
   TIGR00424 376 lvvlyapwcpfcqameasyvelaeklagsg.vkvakfradgdqkefakqelqlgsfptillfp 437
                 ++ ++apwc  c+ m+  ++ la     s  v +a   +    k+++  +  ++ fpti +f 
  MMETSP1137-20121227|7695_1  24 FIKFFAPWCGHCKKMKPDWDTLATEYESSDkVLIADVDCTAAGKSLCD-KYGVKGFPTIKYFN 85 
                 45689******************9986543144555555555666654.46788888888774 PP

>> TIGR02196  GlrX_YruB: glutaredoxin-like protein, YruB-family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.1   8.9e-05     0.041       7      54 ..      29      81 ..      25      85 .. 0.75

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 8.9e-05
   TIGR02196  7 tpwCppCkkakeyLkskgiafeeid...ve.kd.saaaeellkklgqrsvPvi 54
                 pwC++Ckk+k    +   ++e  d   ++  d  aa + l  k+g ++ P+i
  MMETSP1137-20121227|7695_1 29 APWCGHCKKMKPDWDTLATEYESSDkvlIAdVDcTAAGKSLCDKYGVKGFPTI 81
                69*******************98875432212313455678888888888887 PP

>> TIGR00411  redox_disulf_1: redox-active disulfide protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   0.00011     0.052       6      57 ..      27      81 ..      24      85 .. 0.75
   2 ?   -2.9   0.0       3.6   1.6e+03      39      43 ..     118     122 ..     104     145 .. 0.58

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 0.00011
   TIGR00411  6 ftsPtCPyCPkakkvveevakee..gdkvevekinvme.dlkkaleyGimavPai 57
                f +P C +C k k   +  a e   +dkv +  ++    ++    +yG+++ P+i
  MMETSP1137-20121227|7695_1 27 FFAPWCGHCKKMKPDWDTLATEYesSDKVLIADVDCTAaGKSLCDKYGVKGFPTI 81
                668**************99987611566767777755414444569*******99 PP

  == domain 2    score: -2.9 bits;  conditional E-value: 3.6
   TIGR00411  39 vmedl 43 
                 +me+ 
  MMETSP1137-20121227|7695_1 118 TMENC 122
                 33322 PP

>> TIGR00012  L29: ribosomal protein L29
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.7   0.00015      0.07       4      21 ..     135     152 ..     134     161 .. 0.91

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 0.00015
   TIGR00012   4 ekskeELakklkelKkeL 21 
                 ++s+e++ak+l++lK+eL
  MMETSP1137-20121227|7695_1 135 DMSAEDRAKMLEDLKTEL 152
                 69***************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (207 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       365  (0.088981); expected 82.0 (0.02)
Passed bias filter:                      228  (0.0555826); expected 82.0 (0.02)
Passed Vit filter:                        34  (0.00828864); expected 4.1 (0.001)
Passed Fwd filter:                         9  (0.00219405); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.27u 0.17s 00:00:00.44 Elapsed: 00:00:00.37
# Mc/sec: 738.43
//
Query:       MMETSP1137-20121227|7696_1  [L=208]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.1e-22   76.0   0.0    7.2e-22   75.7   0.0    1.1  1  TIGR00231 small_GTP: small GTP-binding protein domain
    0.00022   18.2   0.1    0.00061   16.7   0.1    1.6  1  TIGR03594 GTPase_EngA: ribosome-associated GTPase EngA
    0.00075   16.4   0.0      0.033   11.0   0.0    2.0  2  TIGR02729 Obg_CgtA: Obg family GTPase CgtA
     0.0037   14.5   0.2      0.011   13.0   0.1    1.7  2  TIGR03596 GTPase_YlqF: ribosome biogenesis GTP-binding protein YlqF
     0.0054   14.0   0.5        1.2    6.3   0.0    2.1  2  TIGR00436 era: GTP-binding protein Era
      0.006   13.3   0.7       0.47    7.1   0.0    2.0  2  TIGR03156 GTP_HflX: GTP-binding protein HflX


Domain annotation for each model (and alignments):
>> TIGR00231  small_GTP: small GTP-binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.7   0.0   1.1e-24   7.2e-22       2     158 ..      43     196 ..      42     202 .. 0.88

  Alignments for each domain:
  == domain 1    score: 75.7 bits;  conditional E-value: 1.1e-24
   TIGR00231   2 keikivivGhvdvGKstLlnsllknkisiteskpgvtrdyvteqieedGktykvnllDTaGqedfdairrlyvreverslevvdivilvldveeglekqtkeiiheakkkgvpiilvvnKiDlkd.....dlktkvkslfaklnaepiielsaetgknidkl 158
                 ke++++i+G +++GK+t+l++l   +   + ++p+++++++t  ++++G   +++++D++Gq   ++ +r y++++++++ vvd +   +++   + +   +  +e + k++++++++nK+Dl +     ++  k +    k  + +i+++sa +g+++ + 
  MMETSP1137-20121227|7696_1  43 KEVRVLILGLDNAGKTTILYKLQMGE--VVTTVPTIGFNVET--VQYKG--LRFQVWDLGGQTSIRPYWRCYYQNTNAIIYVVDSADS-DRMGISK-QXLVTMLEEEELKDAVLMVFANKQDLPNavaadAIADKLGLSSLKDRQWAIFKTSAIKGDGLYEG 196
                 7899**********************..55556*******99..8****..99***********************************.8888887.6677777777779***************9988778888888888888888999999999887665 PP

>> TIGR03594  GTPase_EngA: ribosome-associated GTPase EngA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.1   8.9e-07   0.00061       2     162 ..      46     206 ..      45     208 .] 0.80

  Alignments for each domain:
  == domain 1    score: 16.7 bits;  conditional E-value: 8.9e-07
   TIGR03594   2 vvaivGrpNVGKStLfNrlvkkrkAivedtpgvTRDrkygeaelkgkefiliDTgGleeeedelekeireqaelaieeadvilfvvdare..glteeDeeiaklLrksk...kpvilvvNKvdnkkeeaeaaefyslGlge.......vlaiSaehgrgikdLldeileelpe 162
                  v i+G  N GK t++ +l      +v  +p +    + +++++kg +f++ D gG         ++ir   +   ++ ++i++vvd  +  ++  + + ++++L++++     +++ +NK d  ++ a+ a + +lGl++       +++ Sa +g+g+ + ld ++++l++
  MMETSP1137-20121227|7696_1  46 RVLILGLDNAGKTTILYKLQMGE--VVTTVPTI--GFNVETVQYKGLRFQVWDLGGQ--------TSIRPYWRCYYQNTNAIIYVVDSADsdRMGISKQXLVTMLEEEElkdAVLMVFANKQDLPNAVAADAIADKLGLSSlkdrqwaIFKTSAIKGDGLYEGLDWLVNALKD 206
                 589****************8766..67777755..468899***************7........67888999999***********8763367778999*****98876322344568******999998999999997533333446888999999999988888888765 PP

>> TIGR02729  Obg_CgtA: Obg family GTPase CgtA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    3.5   0.0    0.0096       6.6     160     178 ..      47      65 ..      43      82 .. 0.86
   2 !   11.0   0.0   4.9e-05     0.033     234     325 ..     110     201 ..     106     205 .. 0.79

  Alignments for each domain:
  == domain 1    score: 3.5 bits;  conditional E-value: 0.0096
   TIGR02729 160 vglvGlpnaGkStllsavs 178
                 v ++Gl naGk t+l ++ 
  MMETSP1137-20121227|7696_1  47 VLILGLDNAGKTTILYKLQ 65 
                 6689**********98765 PP

  == domain 2    score: 11.0 bits;  conditional E-value: 4.9e-05
   TIGR02729 234 ertrvllhlidlseedekdpvedleviekeLkkyseeLaekpelvvlnkidlleeeeleellkelkeel....ekkvlaisaltkegleellkkll 325
                 ++t+ +++++d +++d+  + ++   + + L+  +eeL++   +v +nk dl+++  +++++++l  ++    +  ++++sa++++gl e l+ l+
  MMETSP1137-20121227|7696_1 110 QNTNAIIYVVDSADSDRMGISKQX--LVTMLE--EEELKDAVLMVFANKQDLPNAVAADAIADKLGLSSlkdrQWAIFKTSAIKGDGLYEGLDWLV 201
                 57999********99776655544..445555..57899999************99999999888665555668999********99987766655 PP

>> TIGR03596  GTPase_YlqF: ribosome biogenesis GTP-binding protein YlqF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   0.1   1.5e-05     0.011     112     146 ..      38      72 ..      23      87 .. 0.84
   2 ?   -0.9   0.0      0.26   1.8e+02      71     105 ..     107     141 ..      93     188 .. 0.62

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 1.5e-05
   TIGR03596 112 kglkkkairalvvGiPNvGKStliNrlakkkvakv 146
                   l +k++r+l++G+ N GK t++ +l   +v+ +
  MMETSP1137-20121227|7696_1  38 TVLGNKEVRVLILGLDNAGKTTILYKLQMGEVVTT 72 
                 567799******************99988877766 PP

  == domain 2    score: -0.9 bits;  conditional E-value: 0.26
   TIGR03596  71 kyfeekgkkalavnakkkkkvkkilkaikkllkek 105
                  y+++++  +++v++ +++++   ++ + ++l+e+
  MMETSP1137-20121227|7696_1 107 CYYQNTNAIIYVVDSADSDRMGISKQXLVTMLEEE 141
                 55555555555555554444443333333333333 PP

>> TIGR00436  era: GTP-binding protein Era
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.1   0.1    0.0019       1.3       2      22 ..      46      66 ..      45      79 .. 0.84
   2 !    6.3   0.0    0.0017       1.2      81     152 ..     113     193 ..     109     206 .. 0.68

  Alignments for each domain:
  == domain 1    score: 6.1 bits;  conditional E-value: 0.0019
   TIGR00436  2 fvailGrpnvGKSTLlNkllg 22
                +v ilG  n+GK T+l kl  
  MMETSP1137-20121227|7696_1 46 RVLILGLDNAGKTTILYKLQM 66
                688*************99865 PP

  == domain 2    score: 6.3 bits;  conditional E-value: 0.0017
   TIGR00436  81 dlilfvvdsdeknke...dellleklqklkapvvlalnkldnk.....ekdkllelidkeasllefk.eiveisalkgenv 152
                 + i++vvds ++       + l++ l + + +  + +++ +++       ++ +     ++sl + + +i+++sa kg+ +
  MMETSP1137-20121227|7696_1 113 NAIIYVVDSADSDRMgisKQXLVTMLEEEELKDAVLMVFANKQdlpnaVAADAIADKLGLSSLKDRQwAIFKTSAIKGDGL 193
                 679*****97665432378999****9987776666555554432012344455555556666776699******999876 PP

>> TIGR03156  GTP_HflX: GTP-binding protein HflX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.9   0.1    0.0032       2.2     190     215 ..      45      70 ..      39      73 .. 0.84
   2 !    7.1   0.0   0.00069      0.47     268     322 ..     111     166 ..     108     203 .. 0.76

  Alignments for each domain:
  == domain 1    score: 4.9 bits;  conditional E-value: 0.0032
   TIGR03156 190 ptvalvGYTNaGKstllnaltkaevl 215
                 ++v + G  NaGK+t+l +l   ev+
  MMETSP1137-20121227|7696_1  45 VRVLILGLDNAGKTTILYKLQMGEVV 70 
                 68999************999877765 PP

  == domain 2    score: 7.1 bits;  conditional E-value: 0.00069
   TIGR03156 268 eadlllhvvDasdeeaeeqi.eaveevLeelgaeeipvllvlNkidkleeeeleel 322
                 +++ ++ vvD++d++++    +   ++Lee +++++  ++  Nk d+ +  ++++ 
  MMETSP1137-20121227|7696_1 111 NTNAIIYVVDSADSDRMGISkQXLVTMLEEEELKDAVLMVFANKQDLPNAVAADAI 166
                 67889********99887550556789999999999999999****9875544444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (208 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       265  (0.0646026); expected 82.0 (0.02)
Passed bias filter:                      211  (0.0514383); expected 82.0 (0.02)
Passed Vit filter:                        23  (0.00560702); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.26u 0.19s 00:00:00.45 Elapsed: 00:00:00.39
# Mc/sec: 703.94
//
Query:       MMETSP1137-20121227|7697_1  [L=505]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (505 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        83  (0.020234); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.13s 00:00:00.47 Elapsed: 00:00:00.54
# Mc/sec: 1234.34
//
Query:       MMETSP1137-20121227|7698_1  [L=46]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (46 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        22  (0.00536324); expected 82.0 (0.02)
Passed bias filter:                       21  (0.00511945); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.14s 00:00:00.26 Elapsed: 00:00:00.25
# Mc/sec: 242.86
//
Query:       MMETSP1137-20121227|7699_1  [L=113]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (113 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        49  (0.0119454); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.14s 00:00:00.28 Elapsed: 00:00:00.27
# Mc/sec: 552.40
//
Query:       MMETSP1137-20121227|7700_1  [L=102]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (102 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        54  (0.0131643); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.15s 00:00:00.32 Elapsed: 00:00:00.39
# Mc/sec: 345.20
//
Query:       MMETSP1137-20121227|7701_1  [L=429]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (429 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        66  (0.0160897); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.15s 00:00:00.43 Elapsed: 00:00:00.50
# Mc/sec: 1132.47
//
Query:       MMETSP1137-20121227|7702_1  [L=749]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      6e-14   49.5   0.1    2.6e-13   47.4   0.1    2.0  1  TIGR01988 Ubi-OHases: ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family
    2.5e-08   30.9   0.0    4.9e-08   30.0   0.0    1.4  1  TIGR02360 pbenz_hydroxyl: 4-hydroxybenzoate 3-monooxygenase
    4.9e-07   26.7   0.0    6.6e-06   23.0   0.0    2.1  1  TIGR01984 UbiH: 2-polyprenyl-6-methoxyphenol 4-hydroxylase
    2.4e-05   21.3   0.2    9.5e-05   19.3   0.0    1.8  2  TIGR01989 COQ6: ubiquinone biosynthesis monooxygenase COQ6
    0.00082   15.9   0.1      0.002   14.6   0.0    1.6  1  TIGR03219 salicylate_mono: salicylate 1-monooxygenase


Domain annotation for each model (and alignments):
>> TIGR01988  Ubi-OHases: ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.4   0.1   3.2e-16   2.6e-13     148     340 ..     138     332 ..      46     343 .. 0.83

  Alignments for each domain:
  == domain 1    score: 47.4 bits;  conditional E-value: 3.2e-16
   TIGR01988 148 dgetleakLlvgADGanSkvrqaagikttewnyeqsavvanvkleeph....qdtAwerFlpegplAlLPlkdnrsslVwslsp...eeaeellalseeeflaelnaafgsrlgaitlvgeraafPLslthakryvaervaliGdAAhtvhPlAGQGlNlGlrDvaaLaevlaeavergedigslavLkrYererradna 340
                  +  l a+ l ++DGa+S vr+a+g++ ++ +  q+   +++++ e       + A+ +F  ++    + ++ n s+  w+++     + e+  + +e+e  + + a +g +    + v + ++++++++ a+r+    v ++GdAAh++ P ++ G N Gl+D+++L   la+ verg    ++++L  Y++err+  +
  MMETSP1137-20121227|7702_1 138 AELSLDASALLACDGAHSSVRHALGVHLDGPPPLQHFYSVHFRAPELAprlrGKEAMLHFVFNRDAVAVMVAHNVSEGEWVAQLpffPRLERAERFDEAECARLIRACIGDES-IAVDVRSVKRWAMNARVAQRMSVGSVFFVGDAAHQFPPAGAFGANTGLQDAHNLCWKLAA-VERG---EASSSLLXYDAERRPVSL 332
                 445689999**************************999999988665543445667777877776666668889999999988622247777888888888888887777755.57888999**************************************************95.6666...567889999999997655 PP

>> TIGR02360  pbenz_hydroxyl: 4-hydroxybenzoate 3-monooxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.0   0.0     6e-11   4.9e-08     244     329 ..     230     324 ..     200     330 .. 0.80

  Alignments for each domain:
  == domain 1    score: 30.0 bits;  conditional E-value: 6e-11
   TIGR02360 244 krrldeeaaeklvtgpsieksia.........plrsfvaepmryGrlflaGdaahivpptGakGlnlaasdvaylyealleaykekdsaglerys 329
                  +r+de  +++l+++   + sia          +++ va+ m+ G +f++Gdaah  pp+Ga G n+   d + l   l +  + + s++l  y 
  MMETSP1137-20121227|7702_1 230 AERFDEAECARLIRACIGDESIAvdvrsvkrwAMNARVAQRMSVGSVFFVGDAAHQFPPAGAFGANTGLQDAHNLCWKLAAVERGEASSSLLXYD 324
                 468999999999999988888884222222222445699*************************************9999988887777777775 PP

>> TIGR01984  UbiH: 2-polyprenyl-6-methoxyphenol 4-hydroxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.0   0.0     8e-09   6.6e-06     140     329 ..     133     326 ..     106     331 .. 0.76

  Alignments for each domain:
  == domain 1    score: 23.0 bits;  conditional E-value: 8e-09
   TIGR01984 140 evkldneqkleakLlvaAdGanskvreslsiaeeevdyeqtalianvkv....ekphenlAfErF.teeGplAlLPlkdayrlslvwclkk.eqaeelanlsdaeflaeLqkafgerlGkitqvgerkaypLklviaeeqvkervvlignaAqtlhPiAgQGfNlGlrDvltLaevledarkdlGea.allqeylke 329
                  v+++ e +l+a+ l a+dGa+s vr++l ++    +  q     + ++     +   + A+ +F ++  ++A++  ++  +   v  l+   + e+ ++ ++ae  + +++  g +  + ++v   k++++++++a++    +v ++g+aA+   P ++ G N Gl+D+ +L   l++ +   Gea   l  y +e
  MMETSP1137-20121227|7702_1 133 GVNAAAELSLDASALLACDGAHSSVRHALGVHLDGPPPLQHFYSVHFRApelaPRLRGKEAMLHFvFNRDAVAVMVAHNVSEGEWVAQLPFfPRLERAERFDEAECARLIRACIGDESIA-VDVRSVKRWAMNARVAQRMSVGSVFFVGDAAHQFPPAGAFGANTGLQDAHNLCWKLAAVE--RGEAsSSLLXYDAE 326
                 567777888999999999999999999999998876555555555555411104455678999994478899999988886666666665324677788889999777777778877655.56778899********************************************99888763..44331345555555 PP

>> TIGR01989  COQ6: ubiquinone biosynthesis monooxygenase COQ6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0      0.18   1.5e+02     173     192 ..     145     164 ..     132     167 .. 0.81
   2 !   19.3   0.0   1.2e-07   9.5e-05     334     393 ..     275     330 ..     249     353 .. 0.80

  Alignments for each domain:
  == domain 1    score: -1.1 bits;  conditional E-value: 0.18
   TIGR01989 173 klliGADGanSkvRkaanik 192
                   l+  DGa S vR+a +++
  MMETSP1137-20121227|7702_1 145 SALLACDGAHSSVRHALGVH 164
                 567789**********9987 PP

  == domain 2    score: 19.3 bits;  conditional E-value: 1.2e-07
   TIGR01989 334 rvALvGDAAHrvHPLAGqGvNlGfsDvesLvkalaeavkeGadlGsvssLkkyererkak 393
                  v  vGDAAH+  P    G N+G++D++ L   la av++G     +ssL  y++er+  
  MMETSP1137-20121227|7702_1 275 SVFFVGDAAHQFPPAGAFGANTGLQDAHNLCWKLA-AVERGEA---SSSLLXYDAERRPV 330
                 5778********999999***************97.8999985...66777888888765 PP

>> TIGR03219  salicylate_mono: salicylate 1-monooxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.0   2.5e-06     0.002     297     357 ..     271     329 ..     200     340 .. 0.69

  Alignments for each domain:
  == domain 1    score: 14.6 bits;  conditional E-value: 2.5e-06
   TIGR03219 297 yvhGrvaliGdaahamlphqGaGaGqGledayllarlledtkleaedlpellevyddvrre 357
                    G v ++Gdaah   p    Ga  Gl+da+ l   l    +e ++ ++ l  yd+ rr+
  MMETSP1137-20121227|7702_1 271 MSVGSVFFVGDAAHQFPPAGAFGANTGLQDAHNLCWKLAA--VERGEASSSLLXYDAERRP 329
                 44799**********9999999**********99877754..5556666666678888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (749 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        83  (0.020234); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.51u 0.17s 00:00:00.68 Elapsed: 00:00:00.72
# Mc/sec: 1373.05
//
Query:       MMETSP1137-20121227|7703_1  [L=196]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.2e-13   46.5   0.0    1.2e-12   45.7   0.0    1.3  1  TIGR02349 DnaJ_bact: chaperone protein DnaJ
    2.6e-08   30.5   4.7    3.8e-08   30.0   0.2    2.0  2  TIGR03835 termin_org_DnaJ: terminal organelle assembly protein TopJ
     0.0068   14.4   1.5     0.0078   14.2   0.1    1.8  2  TIGR00714 hscB: Fe-S protein assembly co-chaperone HscB


Domain annotation for each model (and alignments):
>> TIGR02349  DnaJ_bact: chaperone protein DnaJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.7   0.0   8.7e-16   1.2e-12      13      56 ..     149     191 ..     139     193 .. 0.94

  Alignments for each domain:
  == domain 1    score: 45.7 bits;  conditional E-value: 8.7e-16
   TIGR02349  13 seeeikkAYrklakkyHPDrnkgekeaeekfkeineAyevLsde 56 
                 +++ +k+AYr +a kyHPDr++ +++a e+f++i++Ay+vL++e
  MMETSP1137-20121227|7703_1 149 TQQRLKEAYRAKALKYHPDRSS-DAKAAERFQQISKAYDVLTEE 191
                 6899******************.999***************986 PP

>> TIGR03835  termin_org_DnaJ: terminal organelle assembly protein TopJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    2.8   0.3    0.0046       6.3     163     230 ..      56     122 ..      49     144 .. 0.72
   2 !   30.0   0.2   2.8e-11   3.8e-08      16      55 ..     150     189 ..     138     192 .. 0.94

  Alignments for each domain:
  == domain 1    score: 2.8 bits;  conditional E-value: 0.0046
   TIGR03835 163 vktasaddaerlf...ddnkepsvtaGlddelqsespapeedsdWealiGnpeyGyfDea.geWiWkGyfDe 230
                  +t+ a+ a r f   + n+     a   +e+q      + + dWe  +G++  G f  a  e++W+    +
  MMETSP1137-20121227|7703_1  56 AETKAANSASRTFlrrEGNHTAHAGASTTEEFQRA----QREYDWEH-VGKSTTGEFQRAqHEYNWEELRRN 122
                 56666777777764445666677777788888876....5557**97.899999999865279***976555 PP

  == domain 2    score: 30.0 bits;  conditional E-value: 2.8e-11
   TIGR03835  16 eqeikkafrkLakkyhPDrnkaadaakifaeineandvLs 55 
                 +q +k a+r  a kyhPDr  +a aa+ f+ i  a+dvL+
  MMETSP1137-20121227|7703_1 150 QQRLKEAYRAKALKYHPDRSSDAKAAERFQQISKAYDVLT 189
                 7899**********************************97 PP

>> TIGR00714  hscB: Fe-S protein assembly co-chaperone HscB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.1       0.9   1.2e+03      91     114 ..      86     109 ..      82     127 .. 0.58
   2 !   14.2   0.1   5.7e-06    0.0078       3      51 ..     148     192 ..     147     196 .] 0.78

  Alignments for each domain:
  == domain 1    score: -2.7 bits;  conditional E-value: 0.9
   TIGR00714  91 eieqakdeaaleklkkkvkkeiqs 114
                 e ++a+ e + e++ k +  e+q 
  MMETSP1137-20121227|7703_1  86 EFQRAQREYDWEHVGKSTTGEFQR 109
                 444555555555554444444443 PP

  == domain 2    score: 14.2 bits;  conditional E-value: 5.7e-06
   TIGR00714   3 lDekaLrkryrklQkqyHPDvsksaqeqaaalqqStelNqAykTLkdpl 51 
                 l +++L+  yr    +yHPD s+ a+    a ++  ++ +Ay  L + l
  MMETSP1137-20121227|7703_1 148 LTQQRLKEAYRAKALKYHPDRSSDAK----AAERFQQISKAYDVLTEEL 192
                 6799****************665554....4677777888888887665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (196 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       154  (0.0375427); expected 82.0 (0.02)
Passed bias filter:                      107  (0.0260848); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.25u 0.17s 00:00:00.42 Elapsed: 00:00:00.37
# Mc/sec: 699.19
//
Query:       MMETSP1137-20121227|7704_1  [L=268]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (268 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       114  (0.0277913); expected 82.0 (0.02)
Passed bias filter:                      107  (0.0260848); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.17s 00:00:00.40 Elapsed: 00:00:00.47
# Mc/sec: 752.62
//
Query:       MMETSP1137-20121227|7705_1  [L=305]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0071   13.1   0.1      0.021   11.6   0.0    1.7  2  TIGR03794 NHLM_micro_HlyD: NHLM bacteriocin system secretion protein


Domain annotation for each model (and alignments):
>> TIGR03794  NHLM_micro_HlyD: NHLM bacteriocin system secretion protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.6   0.0   5.1e-06     0.021     313     360 ..      56     103 ..      52     113 .. 0.91
   2 ?   -1.5   0.0     0.045   1.9e+02     329     359 ..     162     192 ..     128     254 .. 0.58

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 5.1e-06
   TIGR03794 313 evqitPstVkkErdGyirGkVvsvseypatkeavartlgNeelvqkll 360
                 + q+ Pst +  ++G +rG  v  s+  at+ea++r l+  ++++ l 
  MMETSP1137-20121227|7705_1  56 SLQVRPSTSELQQKGILRGSPVVSSRLSATREALERDLRRVAMAHSLE 103
                 689*******************9****************999988875 PP

  == domain 2    score: -1.5 bits;  conditional E-value: 0.045
   TIGR03794 329 irGkVvsvseypatkeavartlgNeelvqkl 359
                 ++G+  +  + +a++e ++r +  +++ + l
  MMETSP1137-20121227|7705_1 162 MKGRPFESVHVIAAREQLQRAMTLHAVTHSL 192
                 4444444444444444444444333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (305 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       100  (0.0243784); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.26u 0.17s 00:00:00.43 Elapsed: 00:00:00.31
# Mc/sec: 1298.60
//
Query:       MMETSP1137-20121227|7706_1  [L=978]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.9e-06   25.8   0.2    5.1e-06   24.5   0.1    1.7  1  TIGR00003 TIGR00003: copper ion binding protein
    2.8e-05   22.4   0.9    7.4e-05   21.0   0.6    1.7  1  TIGR02052 MerP: mercuric transport protein periplasmic component


Domain annotation for each model (and alignments):
>> TIGR00003  TIGR00003: copper ion binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.5   0.1   2.5e-09   5.1e-06       4      64 ..     915     974 ..     913     976 .. 0.95

  Alignments for each domain:
  == domain 1    score: 24.5 bits;  conditional E-value: 2.5e-09
   TIGR00003   4 lqVkgmsCnHCVdkiEkfVGeleGVsavkvdlekekvvVeFdapkvsaeeIkeAildaGye 64 
                 l V+gm+C+ C  k+ ++   l  Vs v+vdl+ + ++V   ap v +   ++A++  G+ 
  MMETSP1137-20121227|7706_1 915 LRVHGMTCEACKCKVTNTLLALPAVSRVHVDLDTKMAKVYTHAP-VPVITFEQAVDAVGFR 974
                 78******************************************.**********999986 PP

>> TIGR02052  MerP: mercuric transport protein periplasmic component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.0   0.6   3.6e-08   7.4e-05      23      68 ..     911     955 ..     901     977 .. 0.83

  Alignments for each domain:
  == domain 1    score: 21.0 bits;  conditional E-value: 3.6e-08
   TIGR02052  23 ktvtlevPgmtcaacPitvktalkkvdGvekaevsfkqklavvtfd 68 
                 + v l v gmtc ac   v ++l  ++ v+++ v+ ++k+a v + 
  MMETSP1137-20121227|7706_1 911 ECVCLRVHGMTCEACKCKVTNTLLALPAVSRVHVDLDTKMAKV-YT 955
                 5799***********************************9987.44 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (978 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       137  (0.0333983); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.64u 0.15s 00:00:00.79 Elapsed: 00:00:00.54
# Mc/sec: 2390.47
//
Query:       MMETSP1137-20121227|7707_1  [L=270]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.7e-41  137.2   0.0    9.9e-41  136.9   0.0    1.1  1  TIGR02540 gpx7: putative glutathione peroxidase Gpx7


Domain annotation for each model (and alignments):
>> TIGR02540  gpx7: putative glutathione peroxidase Gpx7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  136.9   0.0   2.4e-44   9.9e-41       3     152 ..     111     264 ..     109     265 .. 0.92

  Alignments for each domain:
  == domain 1    score: 136.9 bits;  conditional E-value: 2.4e-44
   TIGR02540   3 ysfevkdikg.rlvslekyrgkvslvvnvaseceftdknyralqelqrelgpshfnvlafpcnqfgesepksskeiesfarknygvtfpifskikilgseaepafrflvdssk....keprwnfwkylvdpegkvvkawkpeesveeirpeitsl 152
                 y f +kd+    +v l+ky gkvsl+v vas+   +d+nyr+lq l   l p+ f vlafpcnqfg +ep++s+ei +fa k ygvtfp+f ki + g++++p + +l +  +     + +wn+ k+l+d +gk vk + p    ++i ++it+l
  MMETSP1137-20121227|7707_1 111 YGFSAKDLDTnSAVELDKYSGKVSLIVXVASNEAXADTNYRQLQALYERLAPKGFVVLAFPCNQFGGQEPGTSEEIREFAGK-YGVTFPMFGKIDVNGPNTHPLYAYLKKEQGellgSDIKWNYAKFLIDANGKPVKRYGPPSEPNSIEKDITEL 264
                 88999998651689*****************************************************************975.*************************9876512215789*********************999*******997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (270 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        61  (0.0148708); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.21u 0.15s 00:00:00.36 Elapsed: 00:00:00.30
# Mc/sec: 1187.90
//
Query:       MMETSP1137-20121227|7708_1  [L=275]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (275 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       238  (0.0580205); expected 82.0 (0.02)
Passed bias filter:                      104  (0.0253535); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.13s 00:00:00.38 Elapsed: 00:00:00.48
# Mc/sec: 756.19
//
Query:       MMETSP1137-20121227|7709_1  [L=124]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (124 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        88  (0.0214529); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.11s 00:00:00.26 Elapsed: 00:00:00.33
# Mc/sec: 495.96
//
Query:       MMETSP1137-20121227|7710_1  [L=232]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (232 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       121  (0.0294978); expected 82.0 (0.02)
Passed bias filter:                       99  (0.0241346); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.17s 00:00:00.38 Elapsed: 00:00:00.72
# Mc/sec: 425.30
//
Query:       MMETSP1137-20121227|7711_1  [L=389]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.8e-33  114.1  10.8      2e-32  110.7   7.5    2.3  1  TIGR00817 tpt: Tpt phosphate/phosphoenolpyruvate translocator
    7.6e-08   29.9  12.5    6.1e-05   20.4   0.2    3.0  3  TIGR00950 2A78: carboxylate/amino acid/amine transporter
    2.2e-05   22.1   5.2    0.00037   18.1   3.6    2.4  2  TIGR03340 phn_DUF6: phosphonate utilization associated putative membrane protein


Domain annotation for each model (and alignments):
>> TIGR00817  tpt: Tpt phosphate/phosphoenolpyruvate translocator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  110.7   7.5   1.5e-35     2e-32       3     301 ..      33     382 ..      31     383 .. 0.74

  Alignments for each domain:
  == domain 1    score: 110.7 bits;  conditional E-value: 1.5e-35
   TIGR00817   3 tgllfllwyvlnvyFnivnkkllkl.....fhypvlktlvslavgvllellswssil.............kkrlkiskallklllpvaivhtighvtsnvslskvavSfthtikalepifsvvlskfflgrefpltlylsLlpivlGva........lasltelsfnllgflsamisniefvarnifsKkiltkk...........sldklnly.alisililfllspiafiveglklltreflqaiskv....nvlklvtvs.........lvaalgifHlyqqvafqllervspltysvgNvlKRvvvIvvSilffetkisflqvlGvilaiaGvflYskvkak.kkke 301
                 + ++f+ wy+ n  + i nk  l++       y +++++++l vg+l+ +l w+++              +  +kis++ l  ++pva++ +  h +s  +l++ +v f  ++ka ep+f +++  ++ g++f l+ +l L  i++Gv              +  + +++++ a ++n+    +     k++++             +  +++   lis+ ++fll    f +    +lt   ++ +s+v    n +++vt +         l+a   +f ly+ +a++++++ spl  sv+N+ KRv+v+ vS+++f++ ++f + +G+++ai+GvflYs +    k+k+
  MMETSP1137-20121227|7711_1  33 LLMYFAFWYLGNSFYXIQNKTALNAtggktAGYGMTVATMQLGVGTLYSFLIWIVGYnllpcvgfapptkQSPPKISFSDLLKMMPVAFCSAAAHSSSVLALNAGSVTFGQIVKAGEPVFAALVGTVLYGKSFSLAKWLCLPIIIGGVVfstfkpdkVTGAYSIEYDMTALVMASLANMFAAIKGAENGKLMKTEglkdriggvgnQFAMTEVLgFLISLPVMFLLEGANFPTFVNMFLT-DTMEKTSEVkgkrNKMEMVTSVvsgtglqynLIASGMTFYLYNELATMTIKKTSPLAASVANTAKRVIVMLVSAMVFGEDLTFEKKVGAGVAIFGVFLYSVIDDVlKPKA 382
                 6689********9999***8888762221156889*****************99864112332323322234578999***********************************************************************8888877766666777788888888888887777777777777776777777766663333332212344444444444433333333333.44444455422224444444321222222227777779**************************************************************9988756655 PP

>> TIGR00950  2A78: carboxylate/amino acid/amine transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   1.5   4.3e-06    0.0059     226     264 .]     143     181 ..      62     181 .. 0.78
   2 !   11.9   3.5   1.7e-05     0.024      59     154 ..     125     227 ..     116     261 .. 0.64
   3 !   20.4   0.2   4.4e-08   6.1e-05     192     263 ..     293     368 ..     279     369 .. 0.84

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 4.3e-06
   TIGR00950 226 silalleplvallLgllilgetlslvqliggalilaavl 264
                  i+   ep+ a+l+g+++ g+ +sl++++ + +i+++v+
  MMETSP1137-20121227|7711_1 143 QIVKAGEPVFAALVGTVLYGKSFSLAKWLCLPIIIGGVV 181
                 5677779*****************************996 PP

  == domain 2    score: 11.9 bits;  conditional E-value: 1.7e-05
   TIGR00950  59 vfyvllflavkkltvaiaalllvlaPlyvtllsdllekervrkkkllAavlalaGivlllsdg.......nlsislaGlllgllsgisfAlgtvlakrlvkke 154
                 +  ++ +la +  +v +  ++ +  P++++l   +l  + ++  k+l + + + G+v    +        +++ ++++l+++ l+++ +A+      +l+k+e
  MMETSP1137-20121227|7711_1 125 AAHSSSVLALNAGSVTFGQIVKAGEPVFAALVGTVLYGKSFSLAKWLCLPIIIGGVVFSTFKPdkvtgaySIEYDMTALVMASLANMFAAIKGAENGKLMKTE 227
                 5555556666666666666666666666666666666666666666666666666555554444555555555566666666666666666666666666555 PP

  == domain 3    score: 20.4 bits;  conditional E-value: 4.4e-08
   TIGR00950 192 slqwlallyLgligtllayflynkgl....kevdasaasilalleplvallLgllilgetlslvqliggalilaav 263
                 s+  ++ l   li++++++ lyn  +    k+ ++ aas+ ++++ +  +l++ +++ge+l+  + +g+++ +++v
  MMETSP1137-20121227|7711_1 293 SVVSGTGLQYNLIASGMTFYLYNELAtmtiKKTSPLAASVANTAKRVIVMLVSAMVFGEDLTFEKKVGAGVAIFGV 368
                 555556666689***********98622226899************************************999997 PP

>> TIGR03340  phn_DUF6: phosphonate utilization associated putative membrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   3.6   2.7e-07   0.00037      83     279 ..     133     369 ..     106     371 .. 0.71
   2 !    4.1   0.1    0.0049       6.7     101     133 ..     339     371 ..     326     383 .. 0.84

  Alignments for each domain:
  == domain 1    score: 18.1 bits;  conditional E-value: 2.7e-07
   TIGR03340  83 AYehadvglvYPlaRslPvlvaiaatlllgeeLsalaWlGillivlGllvlglskkaqsrrkalkwalvaalitaiYsviDk......................avalevaasssallylaiqflaag.....lvllllylkrrkraiveearqilasatlgglligsaYalv...........lyAmtllpvalv.valrevs.ivlavllgilllnekvtlkrllgvviivaGlv 279
                 A + + v++   +  + Pv+ a+ +t+l+g++ s  +Wl + +i+ G++  + +  + +   ++++ + a ++ +   +  +                        +  +++  + l  l + fl++g     +v + l+  ++k ++v+ +r+++ ++t      g  Y l+           l  mt  +++ + +++ +++  v+ +l++ ++++e  t+++ +g  + + G+ 
  MMETSP1137-20121227|7711_1 133 ALNAGSVTFGQIVKAGEPVFAALVGTVLYGKSFSLAKWLCLPIIIGGVVFSTFKPDKVTGAYSIEYDMTALVMASLANMFAAikgaengklmkteglkdriggvGNQFAMTEVLGFLISLPVMFLLEGanfptFVNMFLTDTMEKTSEVKGKRNKMEMVTSVVSGTGLQYNLIasgmtfylyneLATMTIKKTSPLaASVANTAkRVIVMLVSAMVFGEDLTFEKKVGAGVAIFGVF 369
                 55666677776677788******************************9999999999999999999999999998888877778899************999665556677788888889999999883322234455666677788888888888777655555566676662222222112223455444443313344433135667788899999999988888877777775 PP

  == domain 2    score: 4.1 bits;  conditional E-value: 0.0049
   TIGR03340 101 vlvaiaatlllgeeLsalaWlGillivlGllvl 133
                 v+v + + +++ge+L+  + +G  + + G+++ 
  MMETSP1137-20121227|7711_1 339 VIVMLVSAMVFGEDLTFEKKVGAGVAIFGVFLY 371
                 788888999999999999999999999999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (389 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       158  (0.0385178); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.36u 0.17s 00:00:00.53 Elapsed: 00:00:00.43
# Mc/sec: 1194.04
//
Query:       MMETSP1137-20121227|7712_1  [L=692]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (692 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       195  (0.0475378); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.14s 00:00:00.57 Elapsed: 00:00:00.49
# Mc/sec: 1864.01
//
Query:       MMETSP1137-20121227|7713_1  [L=92]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (92 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        28  (0.00682594); expected 82.0 (0.02)
Passed bias filter:                       27  (0.00658216); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:00.43
# Mc/sec: 282.40
//
Query:       MMETSP1137-20121227|7714_1  [L=47]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (47 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        48  (0.0117016); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.14s 00:00:00.23 Elapsed: 00:00:00.31
# Mc/sec: 200.11
//
Query:       MMETSP1137-20121227|7715_1  [L=714]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0009   16.1   0.0       0.56    7.0   0.0    2.1  2  TIGR01520 FruBisAldo_II_A: fructose-bisphosphate aldolase, class II


Domain annotation for each model (and alignments):
>> TIGR01520  FruBisAldo_II_A: fructose-bisphosphate aldolase, class II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.0   0.0   0.00014      0.56      81     123 ..     218     261 ..     184     274 .. 0.84
   2 !    7.0   0.0   0.00014      0.56      81     123 ..     594     637 ..     560     650 .. 0.84

  Alignments for each domain:
  == domain 1    score: 7.0 bits;  conditional E-value: 0.00014
   TIGR01520  81 iaGaiaaaeyvrsiaekygvpvv.lhtdhCakkllpyvdgllea 123
                 ++ a  + e+v+   eky ++ v l td   k+ l yvd++l+ 
  MMETSP1137-20121227|7715_1 218 LQSAQHLVEHVKRAMEKYRIQHVyLATDSDDKEELAYVDAMLQP 261
                 5566677899**********8777*****************974 PP

  == domain 2    score: 7.0 bits;  conditional E-value: 0.00014
   TIGR01520  81 iaGaiaaaeyvrsiaekygvpvv.lhtdhCakkllpyvdgllea 123
                 ++ a  + e+v+   eky ++ v l td   k+ l yvd++l+ 
  MMETSP1137-20121227|7715_1 594 LQSAQHLVEHVKRAMEKYRIQHVyLATDSDDKEELAYVDAMLQP 637
                 5566677899**********8777*****************974 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (714 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        63  (0.0153584); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.17s 00:00:00.60 Elapsed: 00:00:00.63
# Mc/sec: 1495.88
//
Query:       MMETSP1137-20121227|7716_1  [L=243]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.9e-38  127.9   0.1    7.2e-37  124.6   0.1    1.9  1  TIGR03634 arc_protsome_B: proteasome endopeptidase complex, archaeal, beta subunit
    3.8e-14   50.8   0.0    5.1e-14   50.4   0.0    1.2  1  TIGR03690 20S_bact_beta: proteasome, beta subunit
    1.6e-12   45.2   0.0    8.4e-12   42.9   0.0    1.8  1  TIGR03633 arc_protsome_A: proteasome endopeptidase complex, archaeal, alpha subunit
    6.3e-06   23.8   0.2    1.1e-05   23.1   0.1    1.4  1  TIGR03692 ATP_dep_HslV: ATP-dependent protease HslVU, peptidase subunit


Domain annotation for each model (and alignments):
>> TIGR03634  arc_protsome_B: proteasome endopeptidase complex, archaeal, beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  124.6   0.1     7e-40   7.2e-37       1     184 [.      34     232 ..      34     233 .. 0.93

  Alignments for each domain:
  == domain 1    score: 124.6 bits;  conditional E-value: 7e-40
   TIGR03634   1 gtTtvGikvkdgvvlAadkraslgnlvasknvkKvfkiddkialtiaGsvgdaqslvrllkaeaklyelrrkkkisvkalatllsnllksskflpflvqllvgGvdeeg.pklyslDplGsiiedkytatGsGspvalgvLedeYee..............dlsleeakklavkaiksaieRDvasGdgidvvvitkdg 184
                 g T++ +   d  v+A d+r+s g  ++s++v K+fk+++ + l++aG  gd+ +l +ll+a+++ ye ++++++ v+a+a++l+n l++++f+p++++ +++G+de+g   +ys Dp+G++   +  +tGsG  +   +L++++e+              dlsl+e+++l+  a +sa eRD+ +Gd ++++vi+  g
  MMETSP1137-20121227|7716_1  34 GGTALAVAGADFAVVAGDTRMSTGFNIMSRSVSKLFKLTKDTVLATAGFRGDITTLQKLLRAKLTEYEQQHGEPMKVHAVAQMLANTLYGRRFFPYYTWNVLAGLDENGvGCVYSYDPVGNYERVRVNVTGSGESLIQPLLDNQFERqhqqkaprppplsvDLSLDETVELVKDAFTSAGERDIRTGDTMEICVISAAG 232
                 5688999999*************************************************************************************************995679*******************************97544444455555555799*******************************9876 PP

>> TIGR03690  20S_bact_beta: proteasome, beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.4   0.0     5e-17   5.1e-14       5     160 ..      34     184 ..      31     219 .. 0.90

  Alignments for each domain:
  == domain 1    score: 50.4 bits;  conditional E-value: 5e-17
   TIGR03690   5 gttivalaykgGvllaGdrratqGnliasrdvekvfkadeysavgiaGtaglavelvklfqvelehyekieGvplslegkanrlaamvrsnlaaalqGlavvpllvGydleaekGrifsydvvggkeeeeeyesvGsGsvfakgalkklykedlse 160
                 g t +a+a ++  ++aGd r ++G  i sr v k+fk  + ++++ aG  g    l kl + +l  ye+  G p+ +++ a+ la+ + +     +       +l+G d+ ++ G ++syd vg ++e+ + + +GsG    +  l   ++++ ++
  MMETSP1137-20121227|7716_1  34 GGTALAVAGADFAVVAGDTRMSTGFNIMSRSVSKLFKLTKDTVLATAGFRGDITTLQKLLRAKLTEYEQQHGEPMKVHAVAQMLANTLYG---RRFFPYYTWNVLAGLDE-NGVGCVYSYDPVG-NYERVRVNVTGSGESLIQPLLDNQFERQHQQ 184
                 77899999999****************************************************************999999998887765...456667778899****6.689*******996.79***********999999999888877665 PP

>> TIGR03633  arc_protsome_A: proteasome endopeptidase complex, archaeal, alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.9   0.0   8.2e-15   8.4e-12      29     218 ..      34     236 ..      31     241 .. 0.84

  Alignments for each domain:
  == domain 1    score: 42.9 bits;  conditional E-value: 8.2e-15
   TIGR03633  29 gttavGiktkegvvlivdkritskl.leaesiekifkiDdhvgaataGlvaDarvlidrarveaqvnrltYdepievevlakkvadlkqqytqvGG.vrPfGvalliaGvddk.earlfetdPsGalleykavaiGagrekvlellekeyke..............dlsldeaielalkalakale.eelkaeevevavveveekkfr 218
                 g ta+ +  ++  v+++d r+ + + + ++s+ k+fk+ +  + ataG+ +D  +l    r +   +  +++ep++v+++a+ +a++      +G    P+ +  ++aG+d++    +++ dP G++   ++ + G+g++ ++ ll+++++               dlslde++el  +a+++a e +  + +++e++v+++   k++
  MMETSP1137-20121227|7716_1  34 GGTALAVAGADFAVVAGDTRMSTGFnIMSRSVSKLFKLTKDTVLATAGFRGDITTLQKLLRAKLTEYEQQHGEPMKVHAVAQMLANTL-----YGRrFFPYYTWNVLAGLDENgVGCVYSYDPVGNYERVRVNVTGSGESLIQPLLDNQFERqhqqkaprppplsvDLSLDETVELVKDAFTSAGErDIRTGDTMEICVISAAGIKIE 236
                 789999**************9987758899****************************************************999854.....432156************9945689**********************9998877766532222444444454589999*****9999999998455677999***9998776665 PP

>> TIGR03692  ATP_dep_HslV: ATP-dependent protease HslVU, peptidase subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.1   0.1   1.1e-08   1.1e-05       2      70 ..      36     103 ..      35     114 .. 0.92

  Alignments for each domain:
  == domain 1    score: 23.1 bits;  conditional E-value: 1.1e-08
   TIGR03692   2 tilavrkngkvviagdGqvtlgetvlkenarkvrrlyegkvlaGfaGstadaltLferfeekleeykgn 70 
                 t lav   + +v+agd +++ g +++ +++ k+ +l++++vla  aG   d  tL++ + +kl ey+++
  MMETSP1137-20121227|7716_1  36 TALAVAGADFAVVAGDTRMSTGFNIMSRSVSKLFKLTKDTVLAT-AGFRGDITTLQKLLRAKLTEYEQQ 103
                 6789999999*******************************985.8999999***********999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (243 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       113  (0.0275475); expected 82.0 (0.02)
Passed bias filter:                      108  (0.0263286); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.25u 0.13s 00:00:00.38 Elapsed: 00:00:00.38
# Mc/sec: 844.04
//
Query:       MMETSP1137-20121227|7717_1  [L=631]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00043   17.7   0.0     0.0017   15.8   0.0    2.0  2  TIGR03276 Phn-HD: phosphonate degradation operons associated HDIG domain protein


Domain annotation for each model (and alignments):
>> TIGR03276  Phn-HD: phosphonate degradation operons associated HDIG domain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0      0.23   9.4e+02      49      80 ..     206     239 ..     200     250 .. 0.66
   2 !   15.8   0.0   4.1e-07    0.0017      26      91 ..     431     497 ..     426     501 .. 0.88

  Alignments for each domain:
  == domain 1    score: -3.0 bits;  conditional E-value: 0.23
   TIGR03276  49 AalLHDiGHLleeegeek..sargedvkHeelaa 80 
                  +++HD+  L    ++e+     +  ++H+  aa
  MMETSP1137-20121227|7717_1 206 DCVVHDLDYLTWLLNDEPrmLRATATTSHDDRAA 239
                 6789999988766666664123345567776665 PP

  == domain 2    score: 15.8 bits;  conditional E-value: 4.1e-07
   TIGR03276  26 qleHalqcatlAeaagadeelvvAalLHDiGHLleeegeeksargedvkHeelaadyLrel.fsesv 91 
                 +l+H  q+a+  +a+g  + l++  ++HD+G +++ +g ++  +  d++   ++  ++    +++++
  MMETSP1137-20121227|7717_1 431 NLHHLYQTAEGIRAKGLPDWLQLVGFIHDLGKVIHLRGCKEDGTSLDAQWSIVGDTFVVGCaLPDKI 497
                 689**********************************999999999999999998887766666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (631 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        95  (0.0231594); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.12s 00:00:00.54 Elapsed: 00:00:00.55
# Mc/sec: 1514.27
//
Query:       MMETSP1137-20121227|7719_1  [L=239]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (239 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       105  (0.0255973); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.16s 00:00:00.37 Elapsed: 00:00:00.31
# Mc/sec: 1017.59
//
Query:       MMETSP1137-20121227|7720_1  [L=90]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.069    9.9   0.8      0.067    9.9   0.6    1.1  1  TIGR02500 type_III_yscD: type III secretion apparatus protein, YscD/HrpQ family


Domain annotation for each model (and alignments):
>> TIGR02500  type_III_yscD: type III secretion apparatus protein, YscD/HrpQ family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.6   1.6e-05     0.067      82     122 ..       4      44 ..       1      71 [. 0.80

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 1.6e-05
   TIGR02500  82 slnaaasafllgaaddalsgasqtptlsaepanevddlvlg 122
                  + ++a   ++g ad+a+ g s t++++a pa+ +  ++ +
  MMETSP1137-20121227|7720_1   4 HAAPSAATXPSGGADAAPTGQSGTSSVKAPPAPSPSPPRRT 44 
                 566778889***********************987544433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (90 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        24  (0.0058508); expected 82.0 (0.02)
Passed bias filter:                       23  (0.00560702); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.55
# Mc/sec: 215.98
//
Query:       MMETSP1137-20121227|7721_1  [L=753]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (753 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       104  (0.0253535); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.15s 00:00:00.59 Elapsed: 00:00:00.54
# Mc/sec: 1840.51
//
Query:       MMETSP1137-20121227|7722_1  [L=176]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (176 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        41  (0.00999512); expected 82.0 (0.02)
Passed bias filter:                       40  (0.00975134); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.14s 00:00:00.30 Elapsed: 00:00:00.28
# Mc/sec: 829.65
//
Query:       MMETSP1137-20121227|7723_1  [L=296]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (296 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        84  (0.0204778); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.12s 00:00:00.36 Elapsed: 00:00:00.36
# Mc/sec: 1085.24
//
Query:       MMETSP1137-20121227|7724_1  [L=635]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   1.2e-123  410.8   0.0   1.5e-123  410.5   0.0    1.1  1  TIGR02349 DnaJ_bact: chaperone protein DnaJ
    1.5e-27   94.2   0.0    4.2e-24   82.8   0.0    2.1  2  TIGR03835 termin_org_DnaJ: terminal organelle assembly protein TopJ
     0.0002   19.3   0.4    0.00036   18.5   0.2    1.3  1  TIGR00714 hscB: Fe-S protein assembly co-chaperone HscB
  ------ inclusion threshold ------
          5    4.5  20.5       0.28    8.6   3.8    2.6  3  TIGR02642 phage_xxxx: uncharacterized phage protein


Domain annotation for each model (and alignments):
>> TIGR02349  DnaJ_bact: chaperone protein DnaJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  410.5   0.0  1.5e-126  1.5e-123       1     353 [.     285     632 ..     285     633 .. 0.97

  Alignments for each domain:
  == domain 1    score: 410.5 bits;  conditional E-value: 1.5e-126
   TIGR02349   1 dYYeiLgvskdAseeeikkAYrklakkyHPDrnkgekeaeekfkeineAyevLsdeekraqYDqfghagleggaggggagfegfeasefgdigdifeeffgggggsgrr.rskarrgedlevelelsleeavkGvekeielerkekCetCkGsGakkgsklktCktCgGtGqvrkqqgtllgffqsqqtCseCkGeGkiikekCkeCkGkgrvkekkkievkiPaGvedgerlrvegkGeagenggesGdLyvevkvkehkiferegndllvevpisfvqailgeeievptlegkvklkipagtqsgevlrlkgkGvkklksk.krGdllvkvkvevPkklskeekelleelaee 353
                 d Y +Lgv+++Ase++ik+AYr+ a+kyHPD+n+ +++a+ kf+ ineAy +Ls++e ra+YDqfg ag++g +gggg g+++f+      ++dife+ffgg+ g g r rs + +gedl+++l+++++ a++G +k+i++++ e+C+tC G+G  +g+ ++tC+tCgG+G+v+++ +t+lg +q+q+ C++C+G+G+++++ C +C Gkg+vk++kk++v+iP+Gve+g+rlrv+g+G+ag +gg+sGdLyv ++v ++++f+reg d+++++++s+++ailg++++vpt++g+v+l +pagtq+g++lrl+gkG++kl++   rG ++v+vkv++Pk+ls++ekel+ +l+ee
  MMETSP1137-20121227|7724_1 285 DLYATLGVPRSASEKDIKNAYRQAARKYHPDVNP-SDDAKVKFQSINEAYSILSNPEMRARYDQFGMAGIKGMGGGGGPGMQDFD------LSDIFESFFGGQAGGGARrRSGPMQGEDLRFDLDIDFNTALFGGQKKIRINQLESCDTCGGKGVAPGAAVNTCSTCGGKGVVVQVVNTILGRMQQQSRCPTCGGTGTVVEKYCGSCDGKGVVKRSKKLTVNIPPGVESGNRLRVRGEGDAGPKGGPSGDLYVFLNVLSDPRFKREGMDIYADASVSYLDAILGKTLRVPTVDGEVDLVLPAGTQPGTTLRLEGKGAPKLNNVnLRGSHYVNVKVQIPKTLSSTEKELIAKLKEE 632
                 78********************************.99***********************************8888777777654......67********999977666******************************************************************************************************************************************************************************************************************99879**************************9986 PP

>> TIGR03835  termin_org_DnaJ: terminal organelle assembly protein TopJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.8   0.0   4.1e-27   4.2e-24       3      89 ..     285     378 ..     283     385 .. 0.88
   2 !    9.4   0.0   6.2e-05     0.064     716     810 ..     513     611 ..     475     625 .. 0.86

  Alignments for each domain:
  == domain 1    score: 82.8 bits;  conditional E-value: 4.1e-27
   TIGR03835   3 DyyevLgidrDadeqeikkafrkLakkyhPDrnkaadaakifaeineandvLsnPkkraryDkyGhDGvDredd......ldfd.advfdsffe 89 
                 D y  Lg+ r a e++ik a+r+ a+kyhPD n   da+  f+ inea+ +LsnP+ raryD++G  G+ + ++       dfd +d+f+sff 
  MMETSP1137-20121227|7724_1 285 DLYATLGVPRSASEKDIKNAYRQAARKYHPDVNPSDDAKVKFQSINEAYSILSNPEMRARYDQFGMAGIKGMGGgggpgmQDFDlSDIFESFFG 378
                 89****************************************************************999865432222225888679******5 PP

  == domain 2    score: 9.4 bits;  conditional E-value: 6.2e-05
   TIGR03835 716 kGfGhdfgkgl..GDLkvvlkvipsnffqikeddlhvaalvDPlvaynGGiidvfgivklikvkieggikvndlvkikdlGl..tktkykkGsLivqlv 810
                 +G G+  +kg   GDL v l+v+  + f+ +  d+++ a v  l a  G  + v+++  +++  +++g++ +  ++++  G   +     +Gs +v++ 
  MMETSP1137-20121227|7724_1 513 RGEGDAGPKGGpsGDLYVFLNVLSDPRFKREGMDIYADASVSYLDAILGKTLRVPTVDGEVDLVLPAGTQPGTTLRLEGKGApkLNNVNLRGSHYVNVK 611
                 5666666776556********************************************************************955445567999999874 PP

>> TIGR00714  hscB: Fe-S protein assembly co-chaperone HscB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.2   3.5e-07   0.00036       5      56 ..     298     345 ..     296     347 .. 0.82

  Alignments for each domain:
  == domain 1    score: 18.5 bits;  conditional E-value: 3.5e-07
   TIGR00714   5 ekaLrkryrklQkqyHPDvsksaqeqaaalqqStelNqAykTLkdplkRaey 56 
                 ek +++ yr+  ++yHPDv  s  +   a  +   +N+Ay+ L +p +Ra y
  MMETSP1137-20121227|7724_1 298 EKDIKNAYRQAARKYHPDVNPSD-D---AKVKFQSINEAYSILSNPEMRARY 345
                 5678899***********54433.3...4556667***************98 PP

>> TIGR02642  phage_xxxx: uncharacterized phage protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.1      0.75   7.7e+02     154     227 ..     217     299 ..     179     316 .. 0.55
   2 ?    6.7   2.0     0.001       1.1     180     220 ..     420     461 ..     413     465 .. 0.88
   3 ?    8.6   3.8   0.00027      0.28     177     211 ..     460     492 ..     457     499 .. 0.85

  Alignments for each domain:
  == domain 1    score: -2.7 bits;  conditional E-value: 0.75
   TIGR02642 154 deikalkakidteeralrdyav...akaaesqkCPrCrgtgltlrrqeeCdk..CaGtGrl..vptvedlskslg..lsgaei 227
                 ++  a ++    ++r  + +av   + +a  ++    r+ g +lr  + C    C G   +  v+  edl   lg   s++e+
  MMETSP1137-20121227|7724_1 217 SQQSAAQSSSSGDRRLSHSWAVllhKGMALRREAAALRAPGSRLRVLRACRAwaCPGGRXVagVRMQEDLYATLGvpRSASEK 299
                 45566666667777777777754423455666666777777777777777642265533332223455666666644444444 PP

  == domain 2    score: 6.7 bits;  conditional E-value: 0.001
   TIGR02642 180 esqkCPrCrgtgltlrrq.eeCdkCaGtGrlvptvedlsksl 220
                 + + C  C g g  +    + C +C+G G +v+ v+ ++ ++
  MMETSP1137-20121227|7724_1 420 QLESCDTCGGKGVAPGAAvNTCSTCGGKGVVVQVVNTILGRM 461
                 5678***********9999***************99988777 PP

  == domain 3    score: 8.6 bits;  conditional E-value: 0.00027
   TIGR02642 177 kaaesqkCPrCrgtgltlrrqeeCdkCaGtGrlvp 211
                 ++ ++ +CP C gtg+     + C  C+G G +++
  MMETSP1137-20121227|7724_1 460 RMQQQSRCPTCGGTGTVVE--KYCGSCDGKGVVKR 492
                 688999**********975..68********8765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (635 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        97  (0.023647); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.48u 0.14s 00:00:00.62 Elapsed: 00:00:00.66
# Mc/sec: 1269.90
//
Query:       MMETSP1137-20121227|7725_1  [L=654]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0013   16.0   0.0       0.57    7.3   0.0    2.3  2  TIGR03611 RutD: pyrimidine utilization protein D


Domain annotation for each model (and alignments):
>> TIGR03611  RutD: pyrimidine utilization protein D
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.3   0.0   0.00014      0.57      69     112 ..     442     485 ..     432     495 .. 0.87
   2 !    6.2   0.0    0.0003       1.2     194     253 ..     540     598 ..     531     603 .. 0.80

  Alignments for each domain:
  == domain 1    score: 7.3 bits;  conditional E-value: 0.00014
   TIGR03611  69 dvlelldaldiekahvvGhalGgliglelalrkperlaklvlin 112
                  + ++l + +i+ a +vGh+lG++    +a  kp+ la+ v i+
  MMETSP1137-20121227|7725_1 442 AIESALGRHGIKAATFVGHSLGSVYLSWMARMKPHLLASAVFID 485
                 5667888899*************99999**********999986 PP

  == domain 2    score: 6.2 bits;  conditional E-value: 0.0003
   TIGR03611 194 ldriklpvlliaakDDlLvPytqsseLaekLPdaelklleyGghasnvtdpetfnellld 253
                 +d+++  + ++ +  D +vP++q ++  ++ P  +l++l+ G+h  +     +f ++++d
  MMETSP1137-20121227|7725_1 540 ADHLDFSTTVVLSGKDSIVPVSQVQKYFKSNPSVRLSVLP-GAHHGEFLANAAFRRTVVD 598
                 577888899999999************************9.5555555556677777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (654 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        95  (0.0231594); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.15s 00:00:00.56 Elapsed: 00:00:00.48
# Mc/sec: 1798.35
//
Query:       MMETSP1137-20121227|7726_1  [L=363]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (363 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        44  (0.0107265); expected 82.0 (0.02)
Passed bias filter:                       38  (0.00926377); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.17s 00:00:00.44 Elapsed: 00:00:00.37
# Mc/sec: 1294.92
//
Query:       MMETSP1137-20121227|7727_1  [L=310]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (310 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       261  (0.0636275); expected 82.0 (0.02)
Passed bias filter:                      130  (0.0316919); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.15s 00:00:00.44 Elapsed: 00:00:00.71
# Mc/sec: 576.29
//
Query:       MMETSP1137-20121227|7729_1  [L=643]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.5e-81  272.5   0.0    9.8e-81  269.8   0.0    2.2  1  TIGR01810 betA: choline dehydrogenase
    1.1e-68  230.2   8.2    1.3e-49  167.3   1.5    3.0  2  TIGR03970 Rv0697: dehydrogenase, Rv0697 family
    1.8e-06   25.7   0.2    2.8e-06   25.1   0.1    1.3  1  TIGR02032 GG-red-SF: geranylgeranyl reductase family
     0.0013   15.8   0.2     0.0017   15.3   0.2    1.2  1  TIGR01790 carotene-cycl: lycopene cyclase family protein
     0.0043   13.9   0.3      0.006   13.4   0.2    1.1  1  TIGR00031 UDP-GALP_mutase: UDP-galactopyranose mutase
     0.0053   13.5   1.1       0.59    6.8   0.0    2.6  3  TIGR02462 pyranose_ox: pyranose oxidase
     0.0098   12.7   0.1      0.015   12.1   0.1    1.2  1  TIGR02023 BchP-ChlP: geranylgeranyl reductase
  ------ inclusion threshold ------
      0.011   12.3   4.2      0.015   11.9   2.9    1.1  1  TIGR01350 lipoamide_DH: dihydrolipoyl dehydrogenase
      0.018   12.0   1.7      0.027   11.5   1.2    1.2  1  TIGR01421 gluta_reduc_1: glutathione-disulfide reductase
      0.092    9.8   1.7       0.18    8.8   1.2    1.4  1  TIGR00292 TIGR00292: thiazole biosynthesis enzyme
       0.23    8.3   5.6       0.35    7.7   3.9    1.2  1  TIGR02352 thiamin_ThiO: glycine oxidase ThiO


Domain annotation for each model (and alignments):
>> TIGR01810  betA: choline dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  269.8   0.0   2.6e-83   9.8e-81       1     526 [.      71     634 ..      71     639 .. 0.81

  Alignments for each domain:
  == domain 1    score: 269.8 bits;  conditional E-value: 2.6e-83
   TIGR01810   1 dyiiiGaGsaGsvlatrlsedvsnsvlvleaGg........sdyrfdlliqmpaalayp..ls....nkrynwayetepepflnnrrveaarGkvlGGsssinGmvyvrGnaldlekwakeeGleswayadvlpyykrlet.sdggeedyrGtdGpvkvrrgkadnplfealieaGveaGyektedlnGfkqeGfGpldrtvtrGrrvsaarayldpalkrknlevrtralvdkivfe.gkratGvefkkgg......ikervkankevilsagainspkllqlsGiGdaehlkelgielkvelpGvGenlqdhlelylqqackkpvslypalqklkq..........pviGaqwllgkkGvgasnhfea.....ggfvrsaeev.kypniqyhflpvaisydGkkaakehGf.qvhvGsmlsksrGhvkikskdpkekpailfnylsheedkeefreairvtreilkqkaldlyrGreispGeevqtdeeidefvr...edaetal............hpcgtckmGakddemsvvdpetrvhGleglrvvdasilprittGnlnapsimigekaadii 526
                 d+i++G+Gs+Gsv+a+rl + +  svlvleaGg        +d+    ++     l +   ls    +k+y+w   ++p p            +++GG    n m y+rG+++d++kw +     +w++ dvlp+y r e+ +d    d +  dGpv+++ g +++ + ea+iea   aG +k  d+nG  +eG G ++  + +G r saa ay+ +  k   + +  +alv+++ f+ +kr+  vef  g        +++v+  kevilsagai spkll lsGiGda  lk l+i ++++   vG  l d +   +q  +++   +   l++  +          ++   q   + +G   +  f +     g+f++s   v + p++q  + p   +y  +  +   G   + + +++ +srG++ ++s    + p+++  yl   +d    r air  r+i k + l  +   e+ pG++v t+e++ + ++   ++  +              h +gtc++G + d+ +vvd e rv G++g+rv+das++pr   Gn +a+++mige+aa+ +
  MMETSP1137-20121227|7729_1  71 DFIVVGGGSTGSVVAGRLGQAG-FSVLVLEAGGktqatlggADVVAGKMTIFDVPLGWVqiLSdhrwSKQYQWDIPADPPPA---------XARGVGGCGIHNAMXYMRGRPEDFDKWGR-----GWSWDDVLPFYLRSENnRDFPASDLHARDGPVHIQFGSMNDSISEAFIEACAAAGVPKISDFNGPSREGVGRYQFMIRNGVRDSAAAAYIGQHSKPASVSILPHALVTRMFFNkNKRVEAVEFVXGRapaxnaPRQVVRVRKEVILSAGAIMSPKLLLLSGIGDASALKRLNISVVHDNAAVGAGLADGVYGIMQWSTRQGNFIRCRLERGSKqstaedgphdAFCAEQHKKYDRGQRDATVFGSpglsvGAFLKSPWAVgDEPDVQLTLHPWD-KYSRTWKTSYDGIaSMEIANNHPRSRGQIALRSARFSDPPEFIGPYLLDVNDSLPLRWAIREMRKIAKTPPLGDFILDELIPGPQVTTEEQLLDTIQcgpHQFRSRGhpacdrselpvnHLAGTCRLGEAGDPHAVVDLELRVLGVHGVRVADASVMPRPPSGNTHATCMMIGERAAQFV 634
                 9*****************9765.79*****9862221111145555445444444555411332222466777777777774.........34569**********************99.....9**********999862567888****************************************************************************************973567889***98875544434678999*************************************************************999999987433111111111123344555566676555555432222299****9998679*********87.77777777777762689***************************************************************************9887533322333330000111112226678*****************************************************9976 PP

>> TIGR03970  Rv0697: dehydrogenase, Rv0697 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  167.3   1.5   3.5e-52   1.3e-49       2     290 ..      71     368 ..      70     382 .. 0.85
   2 !   62.8   0.3   1.6e-20   6.1e-18     351     486 ..     476     634 ..     461     635 .. 0.60

  Alignments for each domain:
  == domain 1    score: 167.3 bits;  conditional E-value: 3.5e-52
   TIGR03970   2 DvlvvGaGsaGsvlaarLsedpsatvtvleaGpgyldpsrlpaqltdalr...lPigaa.....ssvverygseLtdeprraaaivrGrvlGGsgavnGayfcraleaDfeawsiasWsyddvLpafraietDlDf.etelhGsaGPipvrrtaelsgisaafvaaaraaGfgeeaDlngsgpdlsaGvgavPlnvddgrrvstavayLlPalkrpnLrveaetrvvrilfsatrav.Gvevlgdgaa.....etlr..adrvvlcaGavesaalLllsGvGpaeqLraaGvavvldlP.vGsdtvD 290
                 D++vvG+Gs+Gsv+a rL +  + +v+vleaG   + +   +++++ +++   +P+g         + ++y+ ++  +p    a +rG  +GG g  n   ++r+++ Df++w+  +Ws+ddvLp + ++e ++Df +++lh ++GP+ ++  +  + is+af +a  aaG ++++D ng + +   Gvg+    + +g+r s+a+ay+    k + + +  ++ v+r+ f++++ v  ve + ++a+     ++++     v+l+aGa+ s++lLllsG+G+a  L+   ++vv d   vG  ++D
  MMETSP1137-20121227|7729_1  71 DFIVVGGGSTGSVVAGRLGQ-AGFSVLVLEAGGKTQATLGGADVVAGKMTifdVPLGWVqilsdHRWSKQYQWDIPADPPP--AXARG--VGGCGIHNAMXYMRGRPEDFDKWG-RGWSWDDVLPFYLRSENNRDFpASDLHARDGPVHIQFGSMNDSISEAFIEACAAAGVPKISDFNGPSRE---GVGRYQFMIRNGVRDSAAAAYIGQHSKPASVSILPHALVTRMFFNKNKRVeAVEFVXGRAPaxnapRQVVrvRKEVILSAGAIMSPKLLLLSGIGDASALKRLNISVVHDNAaVGAGLAD 368
                 99****************86.799********9999998888888777652226887541111145666777777655544..44566..9***********************.9********************9999****************************************6555...********************************************999877479999888652222233331145699*******************************99888**99888 PP

  == domain 2    score: 62.8 bits;  conditional E-value: 1.6e-20
   TIGR03970 351 rpksrGeirlasadpaaapviehrydssaaDrealregaalaeeLleave.................astllepavkeseaswvrarlat..s....qhlsGsarmgaeddpaavvDarCrvrGvegLavvDtsilPaitsrGPhativmvaeraaefl 486
                 +p+srG+i l+sa+ +++p     y    +D   lr + +  ++++++++                 + +ll+      ++   r + a   s     hl+G++r+g   dp+avvD + rv Gv+g+ v+D+s++P ++s   hat +m++eraa+f+
  MMETSP1137-20121227|7729_1 476 HPRSRGQIALRSARFSDPPEFIGPYLLDVNDSLPLRWAIREMRKIAKTPPlgdfildelipgpqvttEEQLLDTIQCGPHQFRSRGHPACdrSelpvNHLAGTCRLGEAGDPHAVVDLELRVLGVHGVRVADASVMPRPPSGNTHATCMMIGERAAQFV 634
                 56777777777777777777766776666664433333333333333322222221111112222222222222111111111111222111111127***********************************************************98 PP

>> TIGR02032  GG-red-SF: geranylgeranyl reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.1   0.1   7.6e-09   2.8e-06       1      44 [.      70     114 ..      70     145 .. 0.83

  Alignments for each domain:
  == domain 1    score: 25.1 bits;  conditional E-value: 7.6e-09
   TIGR02032   1 yDvvvvGaGpaGssaAlrlakkGlrVlllekkelpre.keCggal 44 
                 yD++vvG+G  Gs +A rl ++G++Vl+le   + ++ +  ++++
  MMETSP1137-20121227|7729_1  70 YDFIVVGGGSTGSVVAGRLGQAGFSVLVLEAGGKTQAtLGGADVV 114
                 9*****************************987766655555555 PP

>> TIGR01790  carotene-cycl: lycopene cyclase family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.2   4.7e-06    0.0017       1      33 [.      71     103 ..      71     148 .. 0.80

  Alignments for each domain:
  == domain 1    score: 15.3 bits;  conditional E-value: 4.7e-06
   TIGR01790   1 DliviGgGlAglaiAlelakpglrvqlieaapk 33 
                 D iv+GgG  g ++A +l ++g++v ++ea  k
  MMETSP1137-20121227|7729_1  71 DFIVVGGGSTGSVVAGRLGQAGFSVLVLEAGGK 103
                 89***************************8765 PP

>> TIGR00031  UDP-GALP_mutase: UDP-galactopyranose mutase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.2   1.6e-05     0.006       2      32 ..      70     100 ..      69     111 .. 0.91

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 1.6e-05
   TIGR00031   2 fdyiivGaGlsGivlaeilaklnkrvlvvek 32 
                 +d+i+vG G +G+v+a  l + + +vlv+e 
  MMETSP1137-20121227|7729_1  70 YDFIVVGGGSTGSVVAGRLGQAGFSVLVLEA 100
                 9****************************95 PP

>> TIGR02462  pyranose_ox: pyranose oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.2      0.84   3.1e+02       1      37 [.      70     106 ..      70     120 .. 0.84
   2 !    4.6   0.0     0.007       2.6     230     295 ..     278     345 ..     264     363 .. 0.71
   3 !    6.8   0.0    0.0016      0.59     482     546 ..     572     637 ..     568     639 .. 0.92

  Alignments for each domain:
  == domain 1    score: -2.2 bits;  conditional E-value: 0.84
   TIGR02462   1 vdvfiaGsGPigatyakllvdaglkvvmveiGaadsf 37 
                 +d +++G G  g+  a +l +ag+ v+++e G + ++
  MMETSP1137-20121227|7729_1  70 YDFIVVGGGSTGSVVAGRLGQAGFSVLVLEAGGKTQA 106
                 7999**************************9976655 PP

  == domain 2    score: 4.6 bits;  conditional E-value: 0.007
   TIGR02462 230 rftlltevrvtklvlketeekeveaalvrdl.lase.rd.kki.vaksfvlaaGavataqilvnsgissl 295
                   ++l++  vt++ +++  +k+vea++      ++   + + + v k  +l+aGa++++++l+ sgi+++
  MMETSP1137-20121227|7729_1 278 SVSILPHALVTRMFFNK--NKRVEAVEFVXGrAPAXnAPrQVVrVRKEVILSAGAIMSPKLLLLSGIGDA 345
                 56788999999999998..67777776443303333223233314567889***************9854 PP

  == domain 3    score: 6.8 bits;  conditional E-value: 0.0016
   TIGR02462 482 alhlaGttriGldeq.ktvadtdskvfnfknlyvgGnGvietafaanPtltsvayaiksaeaiink 546
                 + hlaGt r+G   + ++v+d + +v + + + v+ + v++   + n   t++    ++a+ +i++
  MMETSP1137-20121227|7729_1 572 VNHLAGTCRLGEAGDpHAVVDLELRVLGVHGVRVADASVMPRPPSGNTHATCMMIGERAAQFVIAE 637
                 67*********876559*******************************************999986 PP

>> TIGR02023  BchP-ChlP: geranylgeranyl reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.1   0.1   4.1e-05     0.015       1      56 [.      70     126 ..      70     132 .. 0.84

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 4.1e-05
   TIGR02023   1 ydvlviGggpsGaaaaetLakagievillerelarikPCGGa.iPlalieefdlPed 56 
                 yd +v+Ggg +G+  a  L +ag +v++le   +     GGa +  + +  fd+P  
  MMETSP1137-20121227|7729_1  70 YDFIVVGGGSTGSVVAGRLGQAGFSVLVLEAGGKTQATLGGAdVVAGKMTIFDVPLG 126
                 7899**************************996666667887577778888888865 PP

>> TIGR01350  lipoamide_DH: dihydrolipoyl dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   2.9   3.9e-05     0.015       2      32 ..      70     100 ..      69     116 .. 0.88

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 3.9e-05
   TIGR01350   2 ydvvviGgGpgGYvaAiraaqlglkvalvek 32 
                 yd +v+GgG  G v A r +q+g++v+++e 
  MMETSP1137-20121227|7729_1  70 YDFIVVGGGSTGSVVAGRLGQAGFSVLVLEA 100
                 9***************************995 PP

>> TIGR01421  gluta_reduc_1: glutathione-disulfide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   1.2   7.2e-05     0.027       3      34 ..      70     101 ..      68     119 .. 0.80

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 7.2e-05
   TIGR01421   3 ydylviGGGsGGiasarraaeyGakallveek 34 
                 yd++v+GGGs G   a r ++ G  +l++e+ 
  MMETSP1137-20121227|7729_1  70 YDFIVVGGGSTGSVVAGRLGQAGFSVLVLEAG 101
                 *****************************963 PP

>> TIGR00292  TIGR00292: thiazole biosynthesis enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   1.2   0.00049      0.18      21      52 ..      69     100 ..      64     122 .. 0.79

  Alignments for each domain:
  == domain 1    score: 8.8 bits;  conditional E-value: 0.00049
   TIGR00292  21 esDviivGaGpsGLtaayylakeglkvvvler 52 
                 + D i+vG+G++G   a  l ++g+ v+vle 
  MMETSP1137-20121227|7729_1  69 VYDFIVVGGGSTGSVVAGRLGQAGFSVLVLEA 100
                 5699**************************95 PP

>> TIGR02352  thiamin_ThiO: glycine oxidase ThiO
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   3.9   0.00095      0.35       1      37 [.      72     107 ..      72     118 .. 0.84

  Alignments for each domain:
  == domain 1    score: 7.7 bits;  conditional E-value: 0.00095
   TIGR02352   1 vlviGgGviGlsvAveLakrghkvtllekdevgsgAs 37 
                 ++v+GgG  G++vA +L ++g++v +le +  + +A+
  MMETSP1137-20121227|7729_1  72 FIVVGGGSTGSVVAGRLGQAGFSVLVLEAGG-KTQAT 107
                 58**************************984.45554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (643 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       130  (0.0316919); expected 82.0 (0.02)
Passed bias filter:                      119  (0.0290102); expected 82.0 (0.02)
Passed Vit filter:                        53  (0.0129205); expected 4.1 (0.001)
Passed Fwd filter:                        11  (0.00268162); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.66u 0.16s 00:00:00.82 Elapsed: 00:00:01.27
# Mc/sec: 668.26
//
Query:       MMETSP1137-20121227|7730_1  [L=302]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (302 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       233  (0.0568016); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.18s 00:00:00.44 Elapsed: 00:00:00.41
# Mc/sec: 972.21
//
Query:       MMETSP1137-20121227|7731_1  [L=601]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (601 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        76  (0.0185275); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.16s 00:00:00.55 Elapsed: 00:00:00.43
# Mc/sec: 1844.78
//
Query:       MMETSP1137-20121227|7732_1  [L=1031]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.7e-05   20.7   0.3    0.00036   17.4   0.0    2.3  3  TIGR01386 cztS_silS_copS: heavy metal sensor kinase
  ------ inclusion threshold ------
      0.015   12.2   0.0      0.049   10.5   0.0    1.8  2  TIGR02966 phoR_proteo: phosphate regulon sensor kinase PhoR


Domain annotation for each model (and alignments):
>> TIGR01386  cztS_silS_copS: heavy metal sensor kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.1   0.3      0.61   1.2e+03       7      42 ..      71     106 ..      70     117 .. 0.79
   2 !   17.4   0.0   1.8e-07   0.00036     347     457 .]     592     710 ..     587     710 .. 0.87
   3 ?    0.4   0.0     0.026        54     125     223 ..     809     907 ..     773     914 .. 0.72

  Alignments for each domain:
  == domain 1    score: -4.1 bits;  conditional E-value: 0.61
   TIGR01386   7 rlallfaavtalvlallglilyssleeeleerdree 42 
                 r a ++aav+ l++++l l+  + l ++++  ++  
  MMETSP1137-20121227|7732_1  71 RQACFVAAVMQLAAIMLELFTRQRLSKKTAWTQKAV 106
                 678999999999999999999999998887766655 PP

  == domain 2    score: 17.4 bits;  conditional E-value: 1.8e-07
   TIGR01386 347 vegdaqlfrRalsNLlsNAlrytpegstievrverradevevsven.tgkg....ipeeelsrlFd...RFYRvdaarsnseegtGLGLaIvrsiveaHgGeveaesadgktrfklkfp 457
                 v  d+ l+     N +sNA ry  +g+ ++ ++  + d+++++v n +g g    ++ +  s +F+   RF+  d     +  +tG G  I+r  +e   G+++++    +t+f+lk p
  MMETSP1137-20121227|7732_1 592 VDIDPRLLLHIYRNAVSNACRYGKKGGLVTTEIDFKDDTLTLRVINlPGAGheklMAMRDASVVFNkgtRFHYDDVPAATARTSTGDGAWIMRKCAECMRGTCSIDFTPTRTVFELKCP 710
                 6679999999999*******************************99534441122455778899*76679*9999999999999*******************************9875 PP

  == domain 3    score: 0.4 bits;  conditional E-value: 0.026
   TIGR01386 125 ksriilasvaallegkkr.rvtilvaldikaekelldalrktllliavllvlltallgalivraglePlrrlsekaarissesLdqrldesrlpaElrel 223
                  + + la+    +  + r  + +  a d++++++l ++ ++  l  +   +  +++l a++ r g + lrr  ++a++ s+ + +q  +   + +El+++
  MMETSP1137-20121227|7732_1 809 SYAVKLARERMPEDLERRlLAFVRSANDSANDQQLYAQRAHGFLRKEHGKATHASILRACACRFGTQCLRRAEAVAEQQSA-DVEQAEEHVVAMTELDKV 907
                 444444444444444555445556688999999999999999*****************************9999998654.455555555555555555 PP

>> TIGR02966  phoR_proteo: phosphate regulon sensor kinase PhoR
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0      0.26   5.3e+02      93     112 ..     442     461 ..     424     469 .. 0.72
   2 ?   10.5   0.0   2.4e-05     0.049     225     267 ..     594     636 ..     516     647 .. 0.85

  Alignments for each domain:
  == domain 1    score: -2.8 bits;  conditional E-value: 0.26
   TIGR02966  93 geeelllvarDvtklkrleq 112
                 +e+  ++v+rD+t+  + ++
  MMETSP1137-20121227|7732_1 442 SEQGCVVVMRDITDRIKRQE 461
                 5666899*****97544433 PP

  == domain 2    score: 10.5 bits;  conditional E-value: 2.4e-05
   TIGR02966 225 gdeeeLrsalsNLveNAikytpeggeitvrweeeeegaelsvk 267
                  d + L  + +N v+NA++y+++gg +t +++ ++++ +l v 
  MMETSP1137-20121227|7732_1 594 IDPRLLLHIYRNAVSNACRYGKKGGLVTTEIDFKDDTLTLRVI 636
                 5667788999********************9999999998886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1031 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       191  (0.0465627); expected 82.0 (0.02)
Passed bias filter:                       97  (0.023647); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.66u 0.16s 00:00:00.82 Elapsed: 00:00:00.79
# Mc/sec: 1722.54
//
Query:       MMETSP1137-20121227|7733_1  [L=223]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (223 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        95  (0.0231594); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.18s 00:00:00.40 Elapsed: 00:00:00.44
# Mc/sec: 668.94
//
Query:       MMETSP1137-20121227|7734_1  [L=163]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (163 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       103  (0.0251097); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.17s 00:00:00.36 Elapsed: 00:00:00.48
# Mc/sec: 448.21
//
Query:       MMETSP1137-20121227|7735_1  [L=386]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (386 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       131  (0.0319356); expected 82.0 (0.02)
Passed bias filter:                      103  (0.0251097); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.18s 00:00:00.48 Elapsed: 00:00:00.52
# Mc/sec: 979.77
//
Query:       MMETSP1137-20121227|7737_1  [L=186]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (186 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        73  (0.0177962); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.17s 00:00:00.35 Elapsed: 00:00:00.28
# Mc/sec: 846.55
//
Query:       MMETSP1137-20121227|7738_1  [L=561]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.1e-19   68.5  26.0    1.5e-19   68.0  18.0    1.1  1  TIGR00797 matE: MATE efflux family protein


Domain annotation for each model (and alignments):
>> TIGR00797  matE: MATE efflux family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.0  18.0   3.6e-23   1.5e-19      16     387 ..      95     473 ..      92     482 .. 0.88

  Alignments for each domain:
  == domain 1    score: 68.0 bits;  conditional E-value: 3.6e-23
   TIGR00797  16 DtafvGhlg.pveL.aavglg.slvlmvliiillglltattalvaqavGagnqqrlsrsasqslllalllgllvavvlifaakpllslmgadeevaelaqeYlrililgipavllslalqgvlrGagdtktpliitvi.gnviniiLdyilifkfglGivGaAlAtvisqylmflllllyilk...akkvdlknegllkpdwealkrllklglplllrvilvsflvtllallvarlG...stalAahqvalqvesllfmlafGlaiAvsalvGqalGagdpkrakevarvalklglllglvlaiililfrefiarlftkdpevlelaaillifvaltqpsdalafvldGvlrGagdtkvaaivtvvsawviglpllfllglv 387
                  ++f+G    + +L +a+g g   ++ ++ i+l+g++    a+v  ++Gag+++r+ ++++++++l +l+ l++++++++a++ + sl  +++++a     Y r +i g+ + l+   l  vl   g ++ + + +++ g+ + i  +y+li+++++G++GaAlA ++++ + +++ l++ +     + + + +  ++ ++ + ++ ++ l +p + ++++ ++++ l +  ++ ++    ++lAa ++ +q+e++ + +  G    +s ++ + lG++d+   ++ a  +l l+ +     +++l++ r  i rl +++ +v ++ ++++++++  + +  +a    + l+  g+     ++t++++++i+ p++  l+ +
  MMETSP1137-20121227|7738_1  95 AMFFAGSTPdSEALqSALGYGrVYFNCTVLIALIGMAAYGWAVVPGCIGAGRRERIPHYFRRAVILSTLIMLPLFALQFAAEPLMRSLS-VPPSIAYDVGVYCRSMICGAWLLLFECHLEIVLVCCGYSRCASFNSLLtGVGVDIGASYLLIYRLNMGVTGAALAWTVVRAARIVVWLCMAVYfgmIPLIFMPKGKEHIFSASEMRCFFSLAMPQIANNMAGWLIFELQVIGLSNIKgisPAELAAGAIWVQCEQAFAAAQSGWIQVTSMRTLALLGKRDAHAGRAFA-LILLLSSAAVAASNAVLYAQRDAIVRLASNNAAVRAAFEKIVWVLVPHIQTRLIALASCSLLIPLGRPILNVAATFGCFYLIACPTVGALA-I 473
                 566666655333334899999999***************************************************99988777766666.8***************************************999988762677******************************999999998877765555555566788999************************9976655555448799*******************************9*****986555555.5666666666778999********************************************************************9998886.3 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (561 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       109  (0.0265724); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.12s 00:00:00.49 Elapsed: 00:00:00.49
# Mc/sec: 1511.14
//
Query:       MMETSP1137-20121227|7739_1  [L=171]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (171 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       194  (0.047294); expected 82.0 (0.02)
Passed bias filter:                      157  (0.038274); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.18s 00:00:00.37 Elapsed: 00:00:00.46
# Mc/sec: 490.66
//
Query:       MMETSP1137-20121227|7741_1  [L=277]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (277 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        54  (0.0131643); expected 82.0 (0.02)
Passed bias filter:                       42  (0.0102389); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.13s 00:00:00.37 Elapsed: 00:00:00.52
# Mc/sec: 703.10
//
Query:       MMETSP1137-20121227|7742_1  [L=245]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (245 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        95  (0.0231594); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.14s 00:00:00.35 Elapsed: 00:00:00.31
# Mc/sec: 1043.14
//
Query:       MMETSP1137-20121227|7743_1  [L=255]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.074   10.1  33.8       0.44    7.5   0.4    2.2  2  TIGR02794 tolA_full: protein TolA
        1.2    5.9  24.1       0.68    6.6  12.3    2.5  2  TIGR00998 8a0101: efflux pump membrane protein
        1.2    4.5  28.4        2.9    3.2  19.8    1.4  1  TIGR02168 SMC_prok_B: chromosome segregation protein SMC
        1.6    7.5   7.7         30    3.4   1.0    3.3  4  TIGR01682 moaD: molybdopterin converting factor, subunit 1
          3    4.5  30.5       0.34    7.6  14.2    2.1  2  TIGR01843 type_I_hlyD: type I secretion membrane fusion protein, HlyD family
        4.1    4.0  11.9       0.85    6.3   4.7    2.1  2  TIGR01219 Pmev_kin_ERG8: phosphomevalonate kinase
        8.7    2.4  21.6       0.82    5.8  11.5    1.6  2  TIGR03185 DNA_S_dndD: DNA sulfur modification protein DndD


Domain annotation for each model (and alignments):
>> TIGR02794  tolA_full: protein TolA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1  18.5     0.001       0.6      40     164 ..      58     171 ..       5     179 .. 0.35
   2 ?    7.5   0.4   0.00075      0.44      35     101 ..     198     252 ..     183     255 .] 0.61

  Alignments for each domain:
  == domain 1    score: 7.1 bits;  conditional E-value: 0.001
   TIGR02794  40 vlvDpaavaqqanrlqqqekkaakkepkpeepkqerqkkleqqaeeakkkqaaeqarqkelekqraaaek.........aak.kaeeaakekee....kkkqaeeakakqaaEakakaeaeaKa...ekkakeeAakkaEee 164
                 v+ Dp ++  q+ +l+ +e+   +++            + e qa+  + k + e+arqk+le+++  + +         ++k k e+a++++ e     ++q  e +                a   e kak eAa+++  e
  MMETSP1137-20121227|7743_1  58 VIPDPDSMRGQFRELTPDEQAIVDRQ------------RRELQAALDESKAKLEAARQKQLEARDDVRSQrrelqaaldESKaKLEAARQKQLEarddVRRQRRELQ----------------AaldESKAKLEAARQKQLE 171
                 23333344444444444444433333............222222222233333333333331111111110000000001111111111111111111111111111................0112233333333332222 PP

  == domain 2    score: 7.5 bits;  conditional E-value: 0.00075
   TIGR02794  35 eiiqAvlvDpaavaqqanrlqqqekkaakkepkpeepkqerqkkleqqaeeakkkqaaeqarqkele 101
                 +i+q v+ Dp ++  q+ +l+ +e+   +++      ++e q +l++ ++      + e+arqk+le
  MMETSP1137-20121227|7743_1 198 SIMQVVIPDPDSMRGQFRELTPDEQAIVDRQ------RRELQAALDESKA------KLEAARQKQLE 252
                 7888888888888888888888888888888......3333333333333......33444444443 PP

>> TIGR00998  8a0101: efflux pump membrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6  12.3    0.0012      0.68      86     180 ..      85     180 ..      69     204 .. 0.66
   2 ?    2.8   0.3     0.017        10     152     173 ..     233     254 ..     214     255 .] 0.65

  Alignments for each domain:
  == domain 1    score: 6.6 bits;  conditional E-value: 0.0012
   TIGR00998  86 eaklaalvrkvkqleikvkklqa...kveslkikleqareklkqaeldleRresllkkglisk..EeldrarkallsakaaLeaaiqeaeaAnqalvrve 180
                 ++  aal++ + +le+  +k+     +v s++ +l++a +   +a+l+ +R+++l+++  + +   el   + al ++ka+Leaa+q++++A+  ++  +
  MMETSP1137-20121227|7743_1  85 RELQAALDESKAKLEAARQKQLEardDVRSQRRELQAALD-ESKAKLEAARQKQLEARDDVRRqrREL---QAALDESKAKLEAARQKQLEARXMMSGDS 180
                 3334566666666665544433313355566666665555.455668888999999988888733344...45677889999999999999998887655 PP

  == domain 2    score: 2.8 bits;  conditional E-value: 0.017
   TIGR00998 152 rkallsakaaLeaaiqeaeaAn 173
                 + al ++ka+Leaa+q++++A+
  MMETSP1137-20121227|7743_1 233 QAALDESKAKLEAARQKQLEAR 254
                 3455667777777777777665 PP

>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2  19.8     0.005       2.9     768     931 ..      80     248 ..      64     255 .] 0.29

  Alignments for each domain:
  == domain 1    score: 3.2 bits;  conditional E-value: 0.005
   TIGR02168 768 leeeleeaeeelkeaeeeieeleaeieqlkeelkalrealseleaelt.elkeeaaekeerleslekeiaalekeleeleeqieeleeeiesleaeieelee...eleeleeeleellkekasleealaelreeleelseelre.lekkvkelereleelreklaqlel 931
                  ++++ e++++l+e+++++e+ +++  ++++++ ++r++l+++ +e + +l+++ +++ e++++++++ ++l+  l+e ++++e +++++ +++  ++  +e   + + ++++l++    ++ +  + +++r + +el+ + ++ ++++++el+++l+e ++kl+++++
  MMETSP1137-20121227|7743_1  80 VDRQRRELQAALDESKAKLEAARQKQLEARDDVRSQRRELQAALDESKaKLEAARQKQLEARDDVRRQRRELQAALDESKAKLEAARQKQLEARXMMSGDSEgnfKPRLMSQRLAAGFSIMQVVIPDPDSMRGQFRELTPDEQAiVDRQRRELQAALDESKAKLEAARQ 248
                 2223333333333333333333333333333333333333333333332333333333333333333333333333333333333333333333322221110001111222222222222222222223333322222221110222233333333333333333222 PP

>> TIGR01682  moaD: molybdopterin converting factor, subunit 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.1     0.076        44      21      64 ..      58     101 ..      52     112 .. 0.74
   2 ?    3.2   1.7      0.06        35      17      64 ..      86     133 ..      75     144 .. 0.68
   3 ?    3.4   1.0     0.051        30      16      64 ..     117     165 ..     107     172 .. 0.65
   4 ?    2.5   0.0     0.098        58      21      64 ..     203     246 ..     192     252 .. 0.75

  Alignments for each domain:
  == domain 1    score: 2.9 bits;  conditional E-value: 0.076
   TIGR01682  21 elpdevttveelkellakegpellesrkqvrvAvneeyvedeal 64 
                  +pd  +  ++++el   e+  +  +r++++ A++e+ ++ ea+
  MMETSP1137-20121227|7743_1  58 VIPDPDSMRGQFRELTPDEQAIVDRQRRELQAALDESKAKLEAA 101
                 56666667788888888888878889999******999885554 PP

  == domain 2    score: 3.2 bits;  conditional E-value: 0.06
   TIGR01682  17 eetlelpdevttveelkellakegpellesrkqvrvAvneeyvedeal 64 
                 e + +l+++ +++e+ ++   + ++ + ++r++++ A++e+ ++ ea+
  MMETSP1137-20121227|7743_1  86 ELQAALDESKAKLEAARQKQLEARDDVRSQRRELQAALDESKAKLEAA 133
                 445566666566666655554555569999999******999885554 PP

  == domain 3    score: 3.4 bits;  conditional E-value: 0.051
   TIGR01682  16 deetlelpdevttveelkellakegpellesrkqvrvAvneeyvedeal 64 
                 +e + +l+++ +++e+ ++   + ++ +  +r++++ A++e+ ++ ea+
  MMETSP1137-20121227|7743_1 117 RELQAALDESKAKLEAARQKQLEARDDVRRQRRELQAALDESKAKLEAA 165
                 4445556666556666555544444468999999999999998876655 PP

  == domain 4    score: 2.5 bits;  conditional E-value: 0.098
   TIGR01682  21 elpdevttveelkellakegpellesrkqvrvAvneeyvedeal 64 
                  +pd  +  ++++el   e+  +  +r++++ A++e+ ++ ea+
  MMETSP1137-20121227|7743_1 203 VIPDPDSMRGQFRELTPDEQAIVDRQRRELQAALDESKAKLEAA 246
                 56666667788888888888878889999******998886655 PP

>> TIGR01843  type_I_hlyD: type I secretion membrane fusion protein, HlyD family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6  14.2   0.00058      0.34     109     235 ..      58     179 ..      36     203 .. 0.74
   2 ?    1.5   1.9     0.041        24     201     228 ..     226     253 ..     213     255 .] 0.63

  Alignments for each domain:
  == domain 1    score: 7.6 bits;  conditional E-value: 0.00058
   TIGR01843 109 aiefpdillsaedavaelvkeqeslfesrksalraqlesleaqikqleaeleglqaqlqalrqqleliseeleal.rkLkekglvsrlelLelereraelqgelaeleaeleklkaeldeleeklqel 235
                  i +pd++     +++el  +++++ ++++++l+a l++ +a+++  ++++ +++ ++++ r++l+++ +e +a+ +   +k+l +r +     r+r+elq++l+e++a+le++++++ e++  + + 
  MMETSP1137-20121227|7743_1  58 VIPDPDSMRG---QFRELTPDEQAIVDRQRRELQAALDESKAKLEAARQKQLEARDDVRSQRRELQAALDESKAKlEAARQKQLEARDD---VRRQRRELQAALDESKAKLEAARQKQLEARXMMSGD 179
                 3334444444...7899999999999999999999999999999999999999999999999999988777666414455666666665...478899999999999999999999999998877654 PP

  == domain 2    score: 1.5 bits;  conditional E-value: 0.041
   TIGR01843 201 ereraelqgelaeleaeleklkaeldel 228
                 +r+r+elq++l+e++a+le++++++ e+
  MMETSP1137-20121227|7743_1 226 DRQRRELQAALDESKAKLEAARQKQLEA 253
                 4566666666666666666666666555 PP

>> TIGR01219  Pmev_kin_ERG8: phosphomevalonate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   4.7    0.0014      0.85     319     389 ..      95     170 ..      68     178 .. 0.68
   2 ?   -3.4   0.1       1.2   7.1e+02     360     389 ..     222     251 ..     213     251 .. 0.81

  Alignments for each domain:
  == domain 1    score: 6.3 bits;  conditional E-value: 0.0014
   TIGR01219 319 edklsdl.dklakdhddvylrvik...vLesekcvlsaee.ellevreallsirrllrkitkeasvdiePekqtsl 389
                 + kl+   +k  +  ddv  +  +   +L+  k  l+a   + le+r+ +++ rr l+   +e+++ +e  +q +l
  MMETSP1137-20121227|7743_1  95 KAKLEAArQKQLEARDDVRSQRRElqaALDESKAKLEAARqKQLEARDDVRRQRRELQAALDESKAKLEAARQKQL 170
                 3333322134445566666554444457887777777654378899999999999999999999999999988887 PP

  == domain 2    score: -3.4 bits;  conditional E-value: 1.2
   TIGR01219 360 reallsirrllrkitkeasvdiePekqtsl 389
                 +  + + rr l+   +e+++ +e  +q +l
  MMETSP1137-20121227|7743_1 222 QAIVDRQRRELQAALDESKAKLEAARQKQL 251
                 455678899999999999999999999876 PP

>> TIGR03185  DNA_S_dndD: DNA sulfur modification protein DndD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8  11.5    0.0014      0.82     184     287 ..      69     171 ..      67     176 .. 0.86
   2 ?   -1.6   0.1      0.24   1.4e+02     232     250 ..     229     247 ..     204     254 .. 0.42

  Alignments for each domain:
  == domain 1    score: 5.8 bits;  conditional E-value: 0.0014
   TIGR03185 184 idqLkadLkvverrrkkeeleseieseiealeaelkeqeekievlaqeiaalrkeleeaerkleslekkfeseGgelaeereelerqqkeleaklkavraelre 287
                 +++L  d +++  r+++e +  ++ +   +lea +++q e +++++ ++ +l+  l+e++ kle +++k  ++  ++  +r el+  + e +akl+a+r++  e
  MMETSP1137-20121227|7743_1  69 FRELTPDEQAIVDRQRRELQA-ALDESKAKLEAARQKQLEARDDVRSQRRELQAALDESKAKLEAARQKQLEARDDVRRQRRELQAALDESKAKLEAARQKQLE 171
                 567777878887777766554.455555789******************************************************************9998655 PP

  == domain 2    score: -1.6 bits;  conditional E-value: 0.24
   TIGR03185 232 iaalrkeleeaerklesle 250
                 + +l+  l+e++ kle ++
  MMETSP1137-20121227|7743_1 229 RRELQAALDESKAKLEAAR 247
                 1222222222222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (255 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       319  (0.0777669); expected 82.0 (0.02)
Passed bias filter:                      124  (0.0302292); expected 82.0 (0.02)
Passed Vit filter:                        19  (0.00463189); expected 4.1 (0.001)
Passed Fwd filter:                        15  (0.00365675); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.50u 0.16s 00:00:00.66 Elapsed: 00:00:00.61
# Mc/sec: 551.76
//
Query:       MMETSP1137-20121227|7744_1  [L=499]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (499 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       126  (0.0307167); expected 82.0 (0.02)
Passed bias filter:                      110  (0.0268162); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.16s 00:00:00.51 Elapsed: 00:00:00.38
# Mc/sec: 1733.23
//
Query:       MMETSP1137-20121227|7745_1  [L=909]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   3.2e-233  773.8   6.7     6e-233  772.9   4.7    1.3  1  TIGR02441 fa_ox_alpha_mit: fatty acid oxidation complex, alpha subunit, mitochondrial
     1e-205  682.9   5.6   1.3e-205  682.6   3.9    1.0  1  TIGR02440 FadJ: fatty oxidation complex, alpha subunit FadJ
     3e-130  433.6   5.8   3.9e-130  433.2   4.0    1.0  1  TIGR02437 FadB: fatty oxidation complex, alpha subunit FadB
    2.6e-62  209.1   4.5    7.2e-59  197.7   0.8    2.6  3  TIGR02279 PaaC-3OHAcCoADH: 3-hydroxyacyl-CoA dehydrogenase PaaC
    2.1e-20   71.2   0.4    3.7e-20   70.3   0.3    1.3  1  TIGR02280 PaaB1: phenylacetate degradation probable enoyl-CoA hydratase PaaB
    1.2e-16   58.4   0.0    1.9e-16   57.7   0.0    1.2  1  TIGR03222 benzo_boxC: benzoyl-CoA-dihydrodiol lyase
    1.5e-12   45.2   1.6    2.6e-12   44.4   1.1    1.4  1  TIGR03189 dienoyl_CoA_hyt: cyclohexa-1,5-dienecarbonyl-CoA hydratase
    3.8e-11   40.8   0.0      6e-11   40.2   0.0    1.3  1  TIGR01929 menB: naphthoate synthase
    3.4e-07   27.7   0.1    5.9e-07   26.9   0.1    1.3  1  TIGR03210 badI: 2-ketocyclohexanecarboxyl-CoA hydrolase
     0.0021   15.1   0.0     0.0038   14.2   0.0    1.3  1  TIGR03200 dearomat_oah: 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase
  ------ inclusion threshold ------
       0.11    9.0   2.4       0.14    8.7   0.2    1.9  2  TIGR03385 CoA_CoA_reduc: CoA-disulfide reductase


Domain annotation for each model (and alignments):
>> TIGR02441  fa_ox_alpha_mit: fatty acid oxidation complex, alpha subunit, mitochondrial
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  772.9   4.7  1.6e-235    6e-233      20     720 ..      46     745 ..      24     751 .. 0.94

  Alignments for each domain:
  == domain 1    score: 772.9 bits;  conditional E-value: 1.6e-235
   TIGR02441  20 kgdvavvkidspnskvntlskelsaefkevldeletneavksavlisskpgsfvaGadidmlkackta..eevtqlsreaqkllekle..kskkpivaaisGsclGGGlelalachyriatkdkktllglpevllGllpGaGgtqrlpklvsvpaaldleltGkkikadrakklGlvdrlvdplGpGlkpaeertieyleevavkvakelankklkvkrdk.GlvekitsyvmtldlvkdkvyktvkekvlkqtkGlypaplkildvvkagldkgsdaGyeaeskafGelsatkeskaliglfdGqveckknkfGkperevkelavlGaGlmGaGiaqvsvdkGlktvlkdateagldrGqqqvakglnkkvkkkkltslerdsilsnltatldy.....safkkadvvieavfedlklkhkvlkeveavvpehciiasntsalpikeiaavssrpekviGmhyfspvdkmqlleiittdktskdtlasavavGlkqGkvvivvkdgpGfyttrilgpmlaevirllqeGvdpkeldklttkfGfpvGaatlvdevGvdvaehvaedlg....kalGerlgGGslellkelvkkGflGrksGkGifiydegkkgskkvnsdadeilkklkllaka.evssdedlqlrlvsrfvneavlcleegilaspleGdigavfGlGfppflGGpfrfvdlyGadklvdklkkyeavygaqfk 720
                 ++++a+v++d p  k+n+ls e++ ef++v +++  ++++k+avlis+kpgsf+aGa+i+m++  +++  e+v ++  ++q+ ++ le  + kkp vaai G clGGGle+al+c +r+a   +kt+lglpev+lGllpGaGgtqrlpkl++  +aldl+ltGk++ka+rakk+ lvd   d              + le++av va + a++ +k k+ k G  +    +  ++   +  ++ +++++v kq+kG+ypap  il  v+agl+ g+ aG ++e++ f +l++t+es al glf G++eckkn fG+   +v +++vlGaGlmGaGia+vs  k ++++lkd   +gl rG  q++ +l kk+ k++lt++ +d  +s++ +  d      + f +ad+vieavfe++ +khkv+ e+ea+v+++ciiasnts+lpi eia+v++rp+ ++Gmhyfspvdkm lle+i + +tsk+  a+av vG++qGk vi vkd pGfy+ r+lgp+lae++ l+q+G dp +l++  t fG+pvG  tl+devG+dv++hv ++l     k lG r+ G +l +l+ +v++GflGrk+GkG+f y++++   k++n++a  i++k++ ++k+ +  s+ +l  r+v rf+ eav cle g++ +  +GdigavfG+GfppflGGpf ++d+ Ga+ +v+kl   ++ +g q +
  MMETSP1137-20121227|7745_1  46 EQGIALVRLDCPGEKQNSLSDEMMGEFETVAEQVANDPKIKAAVLISGKPGSFIAGANIKMIEKLGASsyEAVHEVGLKGQQCMDELEamQQKKPWVAAIDGPCLGGGLEMALCCAHRVASTSSKTVLGLPEVMLGLLPGAGGTQRLPKLIGAAKALDLMLTGKQLKAERAKKMSLVDFTCDA-------------NALERTAVAVAMQAADGSIKPKKRKlGWTDW---FLEKTAPGRSIMFGQAEKQVAKQSKGKYPAPYGILASVRAGLEGGHVAGSKVERERFAKLATTPESAALRGLFFGSTECKKNPFGTVATPVMTMGVLGAGLMGAGIAEVSATKSMRVLLKDRDLKGLSRGEAQITGNLGKKLTKNRLTKYAHDTAVSRIIGLTDAhaswkRHFAQADMVIEAVFEEMGVKHKVVAEMEAIVGDKCIIASNTSTLPIGEIASVAKRPQNIVGMHYFSPVDKMPLLEVIPHAGTSKEVCAAAVDVGIRQGKTVIAVKDVPGFYVNRCLGPFLAEAVALIQQGADPLNLNSALTDFGMPVGGVTLADEVGIDVSRHVVNNLVgeqpKFLGVRMEGADLTMLDAFVEAGFLGRKAGKGFFDYSDKQAKVKPINKEALAIIDKFRHPSKKaDTLSKPELAERMVLRFLIEAVHCLETGVIRNARDGDIGAVFGIGFPPFLGGPFMYMDKLGAKTVVEKLSVLQKEHGDQXR 745
                 4579**********************************************************987654227999*************955678*************************************************************************************98763.............569******************9999787654...344555678899***************************************************************************************************************************************************999986222224699*****************************************************************************************************************************************************************9984455599***********************************9999****************99865267788999************************************************************999888887765 PP

>> TIGR02440  FadJ: fatty oxidation complex, alpha subunit FadJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  682.6   3.9  3.4e-208  1.3e-205       3     683 ..      41     745 ..      39     756 .. 0.92

  Alignments for each domain:
  == domain 1    score: 682.6 bits;  conditional E-value: 3.4e-208
   TIGR02440   3 tltvredniailtidvpgeklntlkaefadqvaeilkqlkekkelrglvlvsgkpdsfiagadismlaackta..deakalaqkgqellaelealpi..kvvaaihgaclggglelalachsrvcsdddktvlglpevqlgllpgsggtqrlprlvgvskaldmiltgkqlrakqalklglvddvvpksilldvavelakkg.....klkrkalslqerllegtalgrallfdlvakktekktrgnypaaerildvvrkglakgmkkgleaearafgelvlskesaalrsiffattelkketgsdatpaaikkvgvlggglmgggiasvtatkaglpvrikdineqgiknalkyaydlldkkvkrrrlkkaerdkklalisgttdy.....rgfkevdivveavfedlelkqqmvkdieretaehtifasntsslpigqiaaaaerpeqviglhyfspvekmplveviphaktseetiattvalakkqgktpivvadkagfyvnrilapyineaarlllegesvehidkalvdfgfpvgpitlldevgidvgakispileae....lgerfkapa..vfdkllsddrkgrkngkgfylygaktkk.kevdesvykllgv..kpe...akleasavaercvllmlneavrcldegvirsardgdigavfgigfppflggpfryldslgadkvvkilkrlatqygerfe 683
                 +++v+e++ia++++d pgek n+l  e+  + +++ +q+ ++++++  vl+sgkp sfiaga+i+m++   ++  +  + +  kgq+ + elea++   + vaai g+clgggle+al c +rv s  +ktvlglpev lgllpg+ggtqrlp+l+g +kald++ltgkql+a +a+k+ lvd     + l  +av  a++      k+k++ l ++++ le ta gr+++f +++k+++k+++g+ypa+  il  vr gl+ g   g ++e ++f++l+ ++esaalr +ff +te kk++    +++++  +gvlg glmg gia+v+atk+ + v +kd + +g+++        l+kk  ++rl+k ++d  +  i g td      r f+++d+v+eavfe++ +k+++v+++e   +++ i+asnts+lpig+ia+ a+rp++++g+hyfspv+kmpl+evipha+ts+e  a++v +  +qgkt i v+d  gfyvnr l p++ ea++l+ +g    +++ al dfg+pvg +tl devgidv+ +++  l+ e    lg r++  +  ++d +++ +  grk+gkgf+ y++k  k k++++   +++    +p     +l+ +++aer vl +l eav cl+ gvir+ardgdigavfgigfppflggpf y+d lga+ vv+ l  l++++g++  
  MMETSP1137-20121227|7745_1  41 SVSVNEQGIALVRLDCPGEKQNSLSDEMMGEFETVAEQVANDPKIKAAVLISGKPGSFIAGANIKMIEKLGASsyEAVHEVGLKGQQCMDELEAMQQkkPWVAAIDGPCLGGGLEMALCCAHRVASTSSKTVLGLPEVMLGLLPGAGGTQRLPKLIGAAKALDLMLTGKQLKAERAKKMSLVDFTCDANALERTAVAVAMQAadgsiKPKKRKLGWTDWFLEKTAPGRSIMFGQAEKQVAKQSKGKYPAPYGILASVRAGLEGGHVAGSKVERERFAKLATTPESAALRGLFFGSTECKKNPFGT-VATPVMTMGVLGAGLMGAGIAEVSATKS-MRVLLKDRDLKGLSRGEAQITGNLGKKLTKNRLTKYAHDTAVSRIIGLTDAhaswkRHFAQADMVIEAVFEEMGVKHKVVAEMEAIVGDKCIIASNTSTLPIGEIASVAKRPQNIVGMHYFSPVDKMPLLEVIPHAGTSKEVCAAAVDVGIRQGKTVIAVKDVPGFYVNRCLGPFLAEAVALIQQGADPLNLNSALTDFGMPVGGVTLADEVGIDVSRHVVNNLVGEqpkfLGVRMEGADltMLDAFVEAGFLGRKAGKGFFDYSDKQAKvKPINKEALAIIDKfrHPSkkaDTLSKPELAERMVLRFLIEAVHCLETGVIRNARDGDIGAVFGIGFPPFLGGPFMYMDKLGAKTVVEKLSVLQKEHGDQXR 745
                 678999*************************************************************9865431145578999************862268**********************************************************************************999999998888776654322234778888***************************************************************************************98543.4456889*******************96.7899*************************************999999988522333679*****************************************************************************************************************************************************************999985544558****99886689*********************9876669999998888874223330113457789*********************************************************************9865 PP

>> TIGR02437  FadB: fatty oxidation complex, alpha subunit FadB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  433.2   4.0  1.1e-132  3.9e-130       5     684 ..      37     730 ..      35     749 .. 0.91

  Alignments for each domain:
  == domain 1    score: 433.2 bits;  conditional E-value: 1.1e-132
   TIGR02437   5 aetlqvelledgiaelvfdapg.svnkldratlasldkaldalkaqsdlkgllltsdk.dafivGaditeflelfakpeeellqwleeansvfnkledlp..vptvaavkGfalGGGlevvlatdfriadktak..iGlpetklGilpGfGGtvrlprliGadsaleiiaaGkevraedalkvglvdavvkaekleaaalqllkdainekldykakrqrklek.lklskleammsftiakGlvaqvaGkhypapvtavktiekaarfgreealeiekkafvklakteeakalvGlflndqyvkgkakkaaklakkvkqaavlGaGimGGGiayqsaskGvpvvmkdiaeksldlGlteaakllnkqlerGkidglklaevlnsitp.tleya....dvdnvdivveavvenpkvkkavlaeveekvredavlasntstisisllakalkrpenfvGmhffnpvhrmplvevirGekssdetiakvvayaskmGktpivvndcpGflvnrvlfpyfaGfskllrdGadfakidkvmekkfGwpmGpaylldvvGidtahhaqavmaeGfpd....rmkkdrrdaidalfeakrlGqknGkGfyayev.dkkGkpkkevdaevlellkevvaeqrdfddeeiiarmmiplilevvrcleeGivasaaeadmalvyGlGfppfrGGvlryldslGvaefv 684
                 +e l v++ e+gia + +d pg   n l  + + +++   + + ++ ++k+ +l s+k  +fi Ga+i  + +l a   e +++   + ++ +++le ++   p vaa++G +lGGGle+ l + +r+a+++ k  +Glpe+ lG+lpG GGt rlp+liGa +al+++ +Gk+ +ae a k++lvd   +a++le +a+++  +a ++ +  k ++   ++  l+ ++    + f  a   va+++  +ypap   +  ++++ + g     ++e++ f+kla t e+ al Glf+   + k++   ++ +a  v    vlGaG+mG Gia  sa+k + v++kd + k+l  G ++ +  l k+l + +++       ++ i   t  +a    ++ ++d+v+eav e+  vk++v+ae+e  v +++++asntst++i ++a   krp+n+vGmh+f pv +mpl+evi    +s+e  a  v    + Gkt i v d pGf+vnr l p++a    l+++Gad  +++  +   fG p+G   l d vGid + h  + +    p+    rm+      +da+ ea  lG+k GkGf+ y+  + k kp  ++  ++++ +++ +++   +++ e+ +rm++ +++e+v+cle G++  a + d++ v+G+Gfppf GG + y+d lG    v
  MMETSP1137-20121227|7745_1  37 GEQLSVSVNEQGIALVRLDCPGeKQNSLSDEMMGEFETVAEQVANDPKIKAAVLISGKpGSFIAGANIKMIEKLGASSYEAVHEVGLKGQQCMDELEAMQqkKPWVAAIDGPCLGGGLEMALCCAHRVASTSSKtvLGLPEVMLGLLPGAGGTQRLPKLIGAAKALDLMLTGKQLKAERAKKMSLVDFTCDANALERTAVAVAMQAADGSIKPKKRKLGWTDWfLEKTAPGRSIMFGQAEKQVAKQSKGKYPAPYGILASVRAGLEGGHVAGSKVERERFAKLATTPESAALRGLFFGSTECKKN--PFGTVATPVMTMGVLGAGLMGAGIAEVSATKSMRVLLKDRDLKGLSRGEAQITGNLGKKLTKNRLTKYAHDTAVSRIIGlTDAHAswkrHFAQADMVIEAVFEEMGVKHKVVAEMEAIVGDKCIIASNTSTLPIGEIASVAKRPQNIVGMHYFSPVDKMPLLEVIPHAGTSKEVCAAAVDVGIRQGKTVIAVKDVPGFYVNRCLGPFLAEAVALIQQGADPLNLNSALTD-FGMPVGGVTLADEVGIDVSRHVVNNLVGEQPKflgvRMEGADLTMLDAFVEAGFLGRKAGKGFFDYSDkQAKVKPINKEALAIIDKFRHPSKKADTLSKPELAERMVLRFLIEAVHCLETGVIRNARDGDIGAVFGIGFPPFLGGPFMYMDKLGAKTVV 730
                 578899999*************889***************************999999458*******9999999999999999999**********9862269*************************98766448**************************************************************************999777766664245555668899****************************************************************999986..578899999*******************************************************99877666666554312223311126899**************************************************************************************************************************************987.*********************988887776754444899999999*********************74145666767777778888888888888999********************************************************87766 PP

>> TIGR02279  PaaC-3OHAcCoADH: 3-hydroxyacyl-CoA dehydrogenase PaaC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.1      0.83   3.1e+02     357     392 ..     212     246 ..     201     251 .. 0.77
   2 !  197.7   0.8   1.9e-61   7.2e-59       5     298 ..     350     650 ..     346     658 .. 0.92
   3 !   11.7   0.0   4.8e-05     0.018     420     484 ..     676     744 ..     668     760 .. 0.82

  Alignments for each domain:
  == domain 1    score: -2.3 bits;  conditional E-value: 0.83
   TIGR02279 357 aaeearpnlvlldlvldystakriaiaaaadttesa 392
                  ae + +++ l+d + d  + +r a+a a ++++++
  MMETSP1137-20121227|7745_1 212 KAE-RAKKMSLVDFTCDANALERTAVAVAMQAADGS 246
                 333.34448999999***********9999999876 PP

  == domain 2    score: 197.7 bits;  conditional E-value: 1.9e-61
   TIGR02279   5 vvkvaviGaGamGaGiaqvaaraGhtvllydiraealaravagiekdlkslvekgkldaaeaeatlkrlvPvaalea.....ladaglvieaivenlevkkalfaqleelltadaiiasntsslsitalaaglarPervaGlhffnPaPlmalvevvsGlateaevaetlyetarawGkqPvrarstPGfivnrvarPyyaealrvleeqaaepasldallrdgaGfamGpleltdliGhdvnfavtcsvf.e.afyqdrrfaPs..lvqkelvaaGrlGrksGrGvyeyaeeaekavpleea 298
                 v+++ v+GaG mGaGia+v+a +  +vll d   + l+r+ a i  +l ++++k++l+    ++ + r++ +++ +a      a+a++viea+ e++ vk+++ a++e++++ ++iiasnts+l i  +a+  +rP++++G+h+f P  +m l+ev+    t +ev ++ +++    Gk  + ++  PGf vnr   P+ aea+ +++ q a+p  l+++l d  G+++G + l d +G dv   v   +  e   +   r+  +   +   +v+aG lGrk+G+G+++y+++++k+ p+++ 
  MMETSP1137-20121227|7745_1 350 VMTMGVLGAGLMGAGIAEVSATKSMRVLLKDRDLKGLSRGEAQITGNLGKKLTKNRLTKYAHDTAVSRIIGLTDAHAswkrhFAQADMVIEAVFEEMGVKHKVVAEMEAIVGDKCIIASNTSTLPIGEIASVAKRPQNIVGMHYFSPVDKMPLLEVIPHAGTSKEVCAAAVDVGIRQGKTVIAVKDVPGFYVNRCLGPFLAEAVALIQ-QGADPLNLNSALTD-FGMPVGGVTLADEVGIDVSRHVVNNLVgEqPKFLGVRMEGAdlTMLDAFVEAGFLGRKAGKGFFDYSDKQAKVKPINKE 650
                 67889*********************************************************************9974444469***********************************************************************************************************************98776.679*********99.69****************977776655232468888887762245689*************************998865 PP

  == domain 3    score: 11.7 bits;  conditional E-value: 4.8e-05
   TIGR02279 420 rtvamlaneaadavlkgva.sardidtamraGvnyP...kGPlawaaqlGiarvlrvlenlqehyGeer 484
                 r v  +  ea+  +  gv   ard d+    G+ +P    GP+ + ++lG++ v++ l  lq+++G++ 
  MMETSP1137-20121227|7745_1 676 RMVLRFLIEAVHCLETGVIrNARDGDIGAVFGIGFPpflGGPFMYMDKLGAKTVVEKLSVLQKEHGDQX 744
                 66667778999999999852789************955337*************************874 PP

>> TIGR02280  PaaB1: phenylacetate degradation probable enoyl-CoA hydratase PaaB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.3   0.3   9.9e-23   3.7e-20       6     198 ..      46     245 ..      41     258 .. 0.84

  Alignments for each domain:
  == domain 1    score: 70.3 bits;  conditional E-value: 9.9e-23
   TIGR02280   6 ekgvlrltlnrp.dklnsfteemhaelaealerverdd.vra.llltGaGrGfcaGqdlsernvtkg....aapdlGetvekfynplvrrlaalpkpvvvavnGvaaGaGanlalagdivlaaesakfiqaf..aklGlipdsGGtwllprlvGrarakglallgekldaetaaewGliwqvvddealadevqalaahlakq 198
                 e+g++ + l+ p +k ns+++em  e+    e+v +d  ++a +l++G    f aG +++  +        a+ ++G   ++  + l     + +kp v+a++G   G G ++al++   +a+ s+k +  +  + lGl+p +GGt  lp+l+G a+a  l l+g++l+ae+a++  l+  + d +al+ ++ a+a + a +
  MMETSP1137-20121227|7745_1  46 EQGIALVRLDCPgEKQNSLSDEMMGEFETVAEQVANDPkIKAaVLISGKPGSFIAGANIKMIEKLGAssyeAVHEVGLKGQQCMDELEA--MQQKKPWVAAIDGPCLGGGLEMALCCAHRVASTSSKTVLGLpeVMLGLLPGAGGTQRLPKLIGAAKALDLMLTGKQLKAERAKKMSLVDFTCDANALERTAVAVAMQAADG 245
                 6788999999986799*******************99887751667888899*****99876654440122555666666666655533..34479*********************************98744679*******************************************999999*****99999988765 PP

>> TIGR03222  benzo_boxC: benzoyl-CoA-dihydrodiol lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.7   0.0   5.1e-19   1.9e-16      63     257 ..      81     274 ..      68     286 .. 0.77

  Alignments for each domain:
  == domain 1    score: 57.7 bits;  conditional E-value: 5.1e-19
   TIGR03222  63 ehpevrvvvltsakdkvfcaGanikmlglsthahkvnfckftnetrngiedase.esglkflaavnGtaaGGGyelalacdeivlvddrssavslpevpllavlpGtGGltrvtdkrrvrrdladifctieeGvkGkrakewrlvdevvksskfdaavaeraaelaaksdrpadak.Gveltklertieedgvryet 257
                 + p++++ vl s+k+  f aGanikm+ +   +          + ++++++ +  + ++ ++aa++G + GGG e+al c + v    +++ + lpev +l++lpG+GG  r+           d++ t  + +k +rak+  lvd     ++++++  + a + a  s +p++ k G +   le+t    ++ + +
  MMETSP1137-20121227|7745_1  81 NDPKIKAAVLISGKPGSFIAGANIKMIEKLGASSYEAVHEVGLKGQQCMDELEAmQQKKPWVAAIDGPCLGGGLEMALCCAHRVASTSSKTVLGLPEV-MLGLLPGAGGTQRLPK-LIGAAKALDLMLT-GKQLKAERAKKMSLVDFTCDANALERTAVAVAMQAADGSIKPKKRKlGWTDWFLEKTAPGRSIMFGQ 274
                 579***********************75543333333334444444444443330445679************************************9.78********999864.4344445576665.667**********************999999999888888887654366666777777666666655 PP

>> TIGR03189  dienoyl_CoA_hyt: cyclohexa-1,5-dienecarbonyl-CoA hydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.4   1.1   7.1e-15   2.6e-12       7     176 ..      47     228 ..      40     246 .. 0.74

  Alignments for each domain:
  == domain 1    score: 44.4 bits;  conditional E-value: 7.1e-15
   TIGR03189   7 rdgkllrlrlarpkanivdaamiaalraalgealeaaalra.vlldaegphfsfgasveehmpdq.caamlkslhklv.........iemldspvpilvavrgqclggglevaaag..nllfaapdaklgqpeiklgvfapaas.cllpervgkvaaedllysgrsidgaegariglvdavaed 176
                 +  +l+rl     k n +  +m+  +++   +  ++++++a vl+  +   f  ga  + +m ++  a+  +++h++           e ++   p + a+ g clgggle+a++   ++  ++ ++ lg pe+ lg++  a     lp+ +g + a dl+ +g+ ++++ ++++ lvd  ++ 
  MMETSP1137-20121227|7745_1  47 QGIALVRLDCPGEKQNSLSDEMMGEFETVAEQVANDPKIKAaVLISGKPGSFIAGA--NIKMIEKlGASSYEAVHEVGlkgqqcmdeLEAMQQKKPWVAAIDGPCLGGGLEMALCCahRVASTSSKTVLGLPEVMLGLLPGAGGtQRLPKLIGAAKALDLMLTGKQLKAERAKKMSLVDFTCDA 228
                 4447899999999***************9999*******97255554444555555..5556655246677788876411111111123456788*****************9865115556677788**********988865157*******************************987654 PP

>> TIGR01929  menB: naphthoate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.2   0.0   1.6e-13     6e-11      10     200 ..      46     243 ..      38     254 .. 0.82

  Alignments for each domain:
  == domain 1    score: 40.2 bits;  conditional E-value: 1.6e-13
   TIGR01929  10 edaiakiaidrp.kvrnafrpktvdellealddaredsdiGvviltGaGdkafcsGGdqkvrgksGykdesGesrlnv.....levqrlirtlpkpvialvnGyaiGGGhvlhvvcdltias..enarfgqtgpkvGsfdgGyGsaylarivGqkkareifflcrqydaeeaekmGlvnavvelaeleketvewareil 200
                 e++ia + +d p + +n++  + + e+ ++ ++  +d++i   +l      +f +G + k+  k G    + ++++ +     ++   ++    kp +a ++G ++GGG  + + c   +as   ++++g  +  +G + g  G+  l +++G  ka +++++++q +ae+a+km lv+   +++ le+++v  a +  
  MMETSP1137-20121227|7745_1  46 EQGIALVRLDCPgEKQNSLSDEMMGEFETVAEQVANDPKIKAAVLISGKPGSFIAGANIKMIEKLGASSYEAVHEVGLkgqqcMDELEAM-QQKKPWVAAIDGPCLGGGLEMALCCAHRVAStsSKTVLGLPEVMLGLLPGAGGTQRLPKLIGAAKALDLMLTGKQLKAERAKKMSLVDFTCDANALERTAVAVAMQAA 243
                 6788888888885578999999999999999*********876665555668********999988665555544433000003333332.3479*************************996678899999999*********************************************************9987755 PP

>> TIGR03210  badI: 2-ketocyclohexanecarboxyl-CoA hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.9   0.1   1.6e-09   5.9e-07       8     185 ..      45     231 ..      39     239 .. 0.83

  Alignments for each domain:
  == domain 1    score: 26.9 bits;  conditional E-value: 1.6e-09
   TIGR03210   8 vrngvatiiinra.eklnafrgrtcdelikalkkagydreigvivlagagdkafctggdqsthd....gnydgrgviglp....veelhsairdvakpviarvqgyaigggnvlvticdltia..sekavlgqvgpkvgsvdpgygtallarvvgekkareiwylcrrysakealamglvnavvphdql 185
                  ++g+a + ++ + ek n++  +   e+    ++   d +i + vl      +f +g +    +     +y+    +gl     ++el++   +  kp +a ++g ++ggg  ++  c   +a  s k+vlg     +g +    gt  l +++g  ka ++    ++  a+ a+ m lv+ +   + l
  MMETSP1137-20121227|7745_1  45 NEQGIALVRLDCPgEKQNSLSDEMMGEFETVAEQVANDPKIKAAVLISGKPGSFIAGANIKMIEklgaSSYEAVHEVGLKgqqcMDELEAM--QQKKPWVAAIDGPCLGGGLEMALCCAHRVAstSSKTVLGLPEVMLGLLPGAGGTQRLPKLIGAAKALDLMLTGKQLKAERAKKMSLVDFTCDANAL 231
                 57899999998875799999999999999999999********9999999999****9976654232258999999999722225555433..4479**************9999999876662268999**999999988777899*********************************987766655 PP

>> TIGR03200  dearomat_oah: 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.0     1e-05    0.0038      42     206 ..      53     222 ..      41     239 .. 0.76

  Alignments for each domain:
  == domain 1    score: 14.2 bits;  conditional E-value: 1e-05
   TIGR03200  42 ildnp.kqynsyttdmvkaiilafrrassdrdvaavvftavgdkafctggntkeyaeyyagnpqeyrqymrlfndmvsai..lgcdkpvicrvngmrigggqeigmaadlsvaqdlak..fgqagpkhgsaaiggatdflplmigceqamvsgtlcepfsahkakrlgii 206
                  ld p  + ns + +m+       ++ ++d +++a+v+ +    +f +g n k   +  a+  +  ++     ++ ++ +  ++ +kp ++ ++g  +ggg e+ + +   va+  +k  +g      g  +  g t+ lp +ig  +a+    + +   a +ak+++++
  MMETSP1137-20121227|7745_1  53 RLDCPgEKQNSLSDEMMGEFETVAEQVANDPKIKAAVLISGKPGSFIAGANIKMIEKLGASSYEAVHEVGLKGQQCMDELeaMQQKKPWVAAIDGPCLGGGLEMALCCAHRVASTSSKtvLGLPEVMLGLLPGAGGTQRLPKLIGAAKALDLMLTGKQLKAERAKKMSLV 222
                 5565523569999999999999999999***********99999*******99887766665554444332223333322115679**********************99999876651267777789******************999766666666666666665554 PP

>> TIGR03385  CoA_CoA_reduc: CoA-disulfide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.1      0.23        86       7      33 ..      22      48 ..      21      56 .. 0.88
   2 ?    8.7   0.2   0.00037      0.14     151     266 ..     352     469 ..     346     478 .. 0.82

  Alignments for each domain:
  == domain 1    score: -0.5 bits;  conditional E-value: 0.23
   TIGR03385  7 gvaaGasaAsrvrRLkkesdiivfekt 33
                ++aa + aA++vr L +++ + v e++
  MMETSP1137-20121227|7745_1 22 ATAAATRAAAHVRTLGEQLSVSVNEQG 48
                789999*****************9986 PP

  == domain 2    score: 8.7 bits;  conditional E-value: 0.00037
   TIGR03385 151 kvvviGgGyiglemvealkergkevtliersekilnkllDeeiakiveeelekkeie.lrlneevksvegeekvevltsgkvyqaDlvilav....GvkPnselikssqlklgkkGaikvn 266
                 ++ v+G+G++g  ++e   ++ + v l +r+ k l    +++i+  +  +l+k+ ++ +  +  v+ ++g   +    +++  qaD+vi+av    Gvk   +++ +++ ++g+k +i  n
  MMETSP1137-20121227|7745_1 352 TMGVLGAGLMGAGIAEVSATKSMRVLLKDRDLKGL-SRGEAQITGNLGKKLTKNRLTkYAHDTAVSRIIGLTDAHASWKRHFAQADMVIEAVfeemGVK--HKVVAEMEAIVGDKCIIASN 469
                 56799**************************9995.667999*********9988862666668999******99999999**********83322333..45677777777877777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (909 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       155  (0.0377864); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                        19  (0.00463189); expected 4.1 (0.001)
Passed Fwd filter:                        11  (0.00268162); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.84u 0.18s 00:00:01.02 Elapsed: 00:00:01.07
# Mc/sec: 1121.29
//
Query:       MMETSP1137-20121227|7746_1  [L=71]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (71 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        58  (0.0141394); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.31
# Mc/sec: 302.30
//
Query:       MMETSP1137-20121227|7747_1  [L=37]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (37 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        50  (0.0121892); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.16s 00:00:00.26 Elapsed: 00:00:00.31
# Mc/sec: 157.54
//
Query:       MMETSP1137-20121227|7748_1  [L=271]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (271 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.17s 00:00:00.40 Elapsed: 00:00:00.56
# Mc/sec: 638.73
//
Query:       MMETSP1137-20121227|7749_1  [L=377]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (377 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        72  (0.0175524); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.14s 00:00:00.40 Elapsed: 00:00:00.40
# Mc/sec: 1244.00
//
Query:       MMETSP1137-20121227|7750_1  [L=904]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-15   55.0   0.0    2.2e-15   54.3   0.0    1.2  1  TIGR03965 actino_glycTran: mycofactocin system glycosyltransferase
     0.0058   14.1   0.0       0.01   13.3   0.0    1.3  1  TIGR04017 WcaA: colanic acid biosynthesis glycosyl transferase WcaA


Domain annotation for each model (and alignments):
>> TIGR03965  actino_glycTran: mycofactocin system glycosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.3   0.0   1.1e-18   2.2e-15      73     384 ..     527     834 ..     504     846 .. 0.72

  Alignments for each domain:
  == domain 1    score: 54.3 bits;  conditional E-value: 1.1e-18
   TIGR03965  73 ldsvtvVvPvrdrpaglarllaalealdyprdrlevivVDDgSedpvetaaar.aaeltvrviRhdrsqGpaaaRNaGlraartefvAFlDsDvvprpgWLeallaefsdpgV..alvaprvvaldaedtrlaryEavrSsLdlGpeeaavrprgaVsYvpsaalivrRrallevgGFDeslevgEDvDlvwRlve.aGarvrYePaavVaHd..hRtrlaawlarraaYgasaaeLarRHpgkvaplvvsawtllallgvlaalgraarlallsallllalvavrlrrarlagadvplravallvlrgllaalyqla 384
                 + s+ vV+P+   p++l   + ++ a++       ++++D   + ++++  a  +++++vrv     + G++aaR  Gl+ ++ e v F+D+Dv+ +   + a +a+  +++    +  + v + +  ++    yEa+r s      + +    + V++ ++a+l+vrR    +     ++   gEDvD + Rl++ +G  +    +a+V H+  +  +   +l r   +  ++  L+ +Hp++v +l  +    l+++ +l+++   +++ + +++++ a+ + +l +    ++  ++ +++      +l+++++la
  MMETSP1137-20121227|7750_1 527 PLSIDVVIPSFRTPTRLLHSIVSI-ADPPGCTLRFILIIDQPDAPNLPELLALqSTRTRVRV--NAFNMGASAARSRGLEESSAEWVLFIDDDVELNYEXISAYAARVREAHAsgNAFCGFVGTTKLPQSESILYEATRMSNITFFYNLPHIFASSVPWGVTANLLVRRTESMDFDTIFAKTGGGEDVDYCIRLQNqTGLPLGRAHNAIVIHEwwPAPSAYRYLLRFWKWTMGDGFLMYKHPQHV-YLCFPNVIELTMVWILVGMF--SPCSRDTVMMV-ATQLSALWA---VELGFETVQALCGPESRHLSSTWRLA 834
                 568899***999998777766666.4443344345667777777777776443244444444..45679**************************************988765215667778777778888889****966655556666666799*************998887766689999**********8527999***********93334567789*******************998.56677777776655666655..44444333322.222223322...34444444444444445555555555 PP

>> TIGR04017  WcaA: colanic acid biosynthesis glycosyl transferase WcaA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   0.0     5e-06      0.01      56     110 ..     577     631 ..     562     669 .. 0.90

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 5e-06
   TIGR04017  56 elndprvkyihndlnsgacavrnqailqakgeyitgiddddewtpnrlsvflahk 110
                 +l+ +r +   n++n ga a r + + +++ e++  iddd e   + +s + a  
  MMETSP1137-20121227|7750_1 577 ALQSTRTRVRVNAFNMGASAARSRGLEESSAEWVLFIDDDVELNYEXISAYAARV 631
                 7889999999*********************************999999987765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (904 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        63  (0.0153584); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.27s 00:00:00.68 Elapsed: 00:00:00.68
# Mc/sec: 1754.68
//
Query:       MMETSP1137-20121227|7751_1  [L=122]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (122 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        52  (0.0126767); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.17s 00:00:00.29 Elapsed: 00:00:00.27
# Mc/sec: 596.40
//
Query:       MMETSP1137-20121227|7752_1  [L=88]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (88 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        38  (0.00926377); expected 82.0 (0.02)
Passed bias filter:                       36  (0.00877621); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.18s 00:00:00.31 Elapsed: 00:00:00.28
# Mc/sec: 414.82
//
Query:       MMETSP1137-20121227|7753_1  [L=295]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (295 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        87  (0.0212092); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.17s 00:00:00.41 Elapsed: 00:00:00.44
# Mc/sec: 884.93
//
Query:       MMETSP1137-20121227|7754_1  [L=401]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   1.8e-119  396.9   0.0   2.2e-119  396.7   0.0    1.0  1  TIGR00092 TIGR00092: GTP-binding protein YchF
      1e-16   58.7   0.0    1.2e-09   35.5   0.0    2.2  2  TIGR02729 Obg_CgtA: Obg family GTPase CgtA
    6.2e-08   29.7   0.0    1.1e-07   28.9   0.0    1.3  1  TIGR03156 GTP_HflX: GTP-binding protein HflX
    1.2e-06   25.9   0.3    2.4e-06   25.0   0.0    1.5  2  TIGR03596 GTPase_YlqF: ribosome biogenesis GTP-binding protein YlqF
    2.7e-06   24.5   0.0    4.6e-06   23.7   0.0    1.3  1  TIGR03594 GTPase_EngA: ribosome-associated GTPase EngA
    3.5e-06   23.8   0.0    4.8e-06   23.4   0.0    1.2  1  TIGR00437 feoB: ferrous iron transport protein B
    1.9e-05   21.8   0.0    2.9e-05   21.1   0.0    1.2  1  TIGR00450 mnmE_trmE_thdF: tRNA modification GTPase TrmE
    7.9e-05   20.3   0.0    0.00018   19.1   0.0    1.7  1  TIGR00231 small_GTP: small GTP-binding protein domain
    0.00017   18.4   0.0    0.00028   17.6   0.0    1.3  1  TIGR03918 GTP_HydF: [FeFe] hydrogenase H-cluster maturation GTPase HydF
    0.00083   16.4   0.0     0.0016   15.5   0.0    1.4  1  TIGR03597 GTPase_YqeH: ribosome biogenesis GTPase YqeH
     0.0014   15.9   0.1     0.0032   14.7   0.0    1.6  1  TIGR00436 era: GTP-binding protein Era
     0.0024   15.4   0.1     0.0046   14.5   0.1    1.3  1  TIGR03598 GTPase_YsxC: ribosome biogenesis GTP-binding protein YsxC


Domain annotation for each model (and alignments):
>> TIGR00092  TIGR00092: GTP-binding protein YchF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  396.7   0.0  6.4e-122  2.2e-119       2     368 .]      23     394 ..      22     394 .. 0.94

  Alignments for each domain:
  == domain 1    score: 396.7 bits;  conditional E-value: 6.4e-122
   TIGR00092   2 nlkaGivGLpnvGkstlfqaitkaklgeaanyPfatiepntgvvnvpderldkLaeivksekvvpttlefvDiaGLvkGaskGeGLGnkfLaniRevdaivhvvRcfedddivhvegkvdPvrDlevineeLilaDlelvekkiekvkkkakegkeakeelel..lekvleaLengkkvrklklneeelkiiksl..nlLtakPilivanvseddlvnkenkllekvkeivaefkegdkvvlvsaeleselselkeeereeflkelgleevsglnrviraaykllnLisfftaGkkevraWtikkGtkapqaagvihtDlekgfikaevikyedlielk...seqeakekGllrleGkdyivkdgDvllfkanv 368
                 nlk G+vGLpnvGks lf+ +t++++  a n+Pf+ti+p +++ +vpder+d L+++ ++    p+ l   DiaGLv+Gas+G GLGn+fL++i+ vd+i+hvvR+f+dd++vhv+++vd vrDle+i+ eL  +Dl  v+ + +  kk  ++gk +  e  l  ++kv e Le +k vr++++n+e++ +i++    lLt+kP+++++n+s +d+++k+nk+l +v+++v+  + g +++++s e e++   l+++e +  +   +    s+l++++ ++yk lnLi fftaG+kevr Wt+ +G  apqaagvih+D+e+gfikaev++++d++++    s+ e+k++G+ r+eGk y+vkdgD+++f +nv
  MMETSP1137-20121227|7754_1  23 NLKMGVVGLPNVGKSSLFNLLTQQAV-AAENFPFCTIDPSEARCPVPDERYDYLCKMWNPPSQYPAYLWCTDIAGLVRGASEGAGLGNAFLSHIQAVDGIYHVVRAFDDDEVVHVDDSVDAVRDLETIQYELCRKDLTYVDSQEQIEKKGLQGGKFKLSENFLfcFAKVRELLEASKPVRDHDWNAEQVTMIREKlpALLTTKPVVYLVNMSAADYARKKNKWLARVRKWVD-EHGGGTMIPFSIEWEQKAWALRDDEAKLAEYVGESGCKSALPKMVVTGYKELNLIYFFTAGEKEVRCWTMYNGGLAPQAAGVIHSDFERGFIKAEVVAFDDFKAIStsaSMAEVKAAGKYRQEGKAYVVKDGDIIHFMFNV 394
                 799***********************.899**************************************************************************************************************976555555555556666665442279*************************875348*********************************9.688999***************9999988888888888899**************************************************************9998777899**************************996 PP

>> TIGR02729  Obg_CgtA: Obg family GTPase CgtA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.0   0.0   8.7e-08     3e-05     160     195 ..      26      61 ..      19      71 .. 0.94
   2 !   35.5   0.0   3.4e-12   1.2e-09     209     281 ..      91     163 ..      83     193 .. 0.84

  Alignments for each domain:
  == domain 1    score: 21.0 bits;  conditional E-value: 8.7e-08
   TIGR02729 160 vglvGlpnaGkStllsavsaakpkiadYpFtTlvPn 195
                 +g+vGlpn+GkS+l++ +++      ++pF T+ P+
  MMETSP1137-20121227|7754_1  26 MGVVGLPNVGKSSLFNLLTQQAVAAENFPFCTIDPS 61 
                 79*******************************996 PP

  == domain 2    score: 35.5 bits;  conditional E-value: 3.4e-12
   TIGR02729 209 laDiPgliegasegagLGleFLkHiertrvllhlidlseedekdpvedleviekeLkkyseeLaekpelvvln 281
                   Di gl+ gasegagLG+ FL Hi+    + h++ + ++de   v+d     ++L++ + eL +k+   v +
  MMETSP1137-20121227|7754_1  91 CTDIAGLVRGASEGAGLGNAFLSHIQAVDGIYHVVRAFDDDEVVHVDDSVDAVRDLETIQYELCRKDLTYVDS 163
                 68**********************************9999998888888888889999999998887665544 PP

>> TIGR03156  GTP_HflX: GTP-binding protein HflX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.9   0.0   3.3e-10   1.1e-07     188     237 ..      22      71 ..      14      77 .. 0.89

  Alignments for each domain:
  == domain 1    score: 28.9 bits;  conditional E-value: 3.3e-10
   TIGR03156 188 evptvalvGYTNaGKstllnaltkaevlaedklFATLdpttrrlklpeee 237
                 +  ++++vG  N GKs+l+n lt++ v ae+  F T+dp+  r+ +p+e+
  MMETSP1137-20121227|7754_1  22 NNLKMGVVGLPNVGKSSLFNLLTQQAVAAENFPFCTIDPSEARCPVPDER 71 
                 456899***********************************999998875 PP

>> TIGR03596  GTPase_YlqF: ribosome biogenesis GTP-binding protein YlqF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.0   0.0     7e-09   2.4e-06     113     145 ..      18      50 ..       7      58 .. 0.85
   2 ?   -3.1   0.0       2.5   8.7e+02      42      72 ..     217     247 ..     214     252 .. 0.76

  Alignments for each domain:
  == domain 1    score: 25.0 bits;  conditional E-value: 7e-09
   TIGR03596 113 glkkkairalvvGiPNvGKStliNrlakkkvak 145
                 g  k+++++ vvG+PNvGKS+l N l+++ va 
  MMETSP1137-20121227|7754_1  18 GRVKNNLKMGVVGLPNVGKSSLFNLLTQQAVAA 50 
                 55678899****************999988764 PP

  == domain 2    score: -3.1 bits;  conditional E-value: 2.5
   TIGR03596  42 leelvknkprlivlnkaDladpektkkwlky 72 
                 l  l++ kp ++++n +     +k++kwl+ 
  MMETSP1137-20121227|7754_1 217 LPALLTTKPVVYLVNMSAADYARKKNKWLAR 247
                 6678889999999998877777778888765 PP

>> TIGR03594  GTPase_EngA: ribosome-associated GTPase EngA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.7   0.0   1.3e-08   4.6e-06       4      41 ..      27      63 ..       6      74 .. 0.61

  Alignments for each domain:
  == domain 1    score: 23.7 bits;  conditional E-value: 1.3e-08
   TIGR03594  4 aivGrpNVGKStLfNrlvkkrkAivedtpgvTRDrkyg 41
                 +vG pNVGKS+LfN l+++  A  e++p  T D  ++
  MMETSP1137-20121227|7754_1 27 GVVGLPNVGKSSLFNLLTQQAVA-AENFPFCTIDPSEA 63
                35666666666666666555444.34455555444444 PP

>> TIGR00437  feoB: ferrous iron transport protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.4   0.0   1.4e-08   4.8e-06       1      40 [.      30      69 ..      30      74 .. 0.91

  Alignments for each domain:
  == domain 1    score: 23.4 bits;  conditional E-value: 1.4e-08
   TIGR00437  1 GnpNvGKstlfnaLtgsnqkvgNwpGvTVekkegklelkg 40
                G pNvGKs+lfn Lt++ ++  N+p  T++  e++  + +
  MMETSP1137-20121227|7754_1 30 GLPNVGKSSLFNLLTQQAVAAENFPFCTIDPSEARCPVPD 69
                77*****************************999887766 PP

>> TIGR00450  mnmE_trmE_thdF: tRNA modification GTPase TrmE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1   0.0   8.6e-08   2.9e-05     203     233 ..      17      47 ..       9      63 .. 0.88

  Alignments for each domain:
  == domain 1    score: 21.1 bits;  conditional E-value: 8.6e-08
   TIGR00450 203 leklkdglklaivGktNvGKSSLlNallkkd 233
                 + ++k+ lk+ +vG +NvGKSSL+N+l ++ 
  MMETSP1137-20121227|7754_1  17 FGRVKNNLKMGVVGLPNVGKSSLFNLLTQQA 47 
                 56899*********************99875 PP

>> TIGR00231  small_GTP: small GTP-binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.0   5.3e-07   0.00018       3      38 ..      23      57 ..      21     135 .. 0.72

  Alignments for each domain:
  == domain 1    score: 19.1 bits;  conditional E-value: 5.3e-07
   TIGR00231  3 eikivivGhvdvGKstLlnsllknkisiteskpgvt 38
                  k ++vG ++vGKs+L+n l+++  +  e  p+ t
  MMETSP1137-20121227|7754_1 23 NLKMGVVGLPNVGKSSLFNLLTQQA-VAAENFPFCT 57
                5799*******************99.4444446555 PP

>> TIGR03918  GTP_HydF: [FeFe] hydrogenase H-cluster maturation GTPase HydF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.0   8.3e-07   0.00028       6      45 ..      22      60 ..      19      65 .. 0.83

  Alignments for each domain:
  == domain 1    score: 17.6 bits;  conditional E-value: 8.3e-07
   TIGR03918  6 erlhialfGrrNaGKSsliNaltgqdvaivsdvpGtTtDp 45
                + l+++++G  N+GKSsl+N lt+q va   ++p  T Dp
  MMETSP1137-20121227|7754_1 22 NNLKMGVVGLPNVGKSSLFNLLTQQAVAA-ENFPFCTIDP 60
                56899********************9984.5666666666 PP

>> TIGR03597  GTPase_YqeH: ribosome biogenesis GTPase YqeH
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   4.7e-06    0.0016     146     184 ..      14      52 ..       4      65 .. 0.79

  Alignments for each domain:
  == domain 1    score: 15.5 bits;  conditional E-value: 4.7e-06
   TIGR03597 146 lelikkarekkdvyvvGvtNVGKSsliNkllklnkgkkk 184
                 ++   +++++ ++ vvG  NVGKSsl N l +++   ++
  MMETSP1137-20121227|7754_1  14 VARFGRVKNNLKMGVVGLPNVGKSSLFNLLTQQAVAAEN 52 
                 55566778888999**************99987765554 PP

>> TIGR00436  era: GTP-binding protein Era
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0   9.4e-06    0.0032       2      25 ..      25      48 ..      24      51 .. 0.89

  Alignments for each domain:
  == domain 1    score: 14.7 bits;  conditional E-value: 9.4e-06
   TIGR00436  2 fvailGrpnvGKSTLlNkllgqki 25
                +++++G pnvGKS L N l++q +
  MMETSP1137-20121227|7754_1 25 KMGVVGLPNVGKSSLFNLLTQQAV 48
                689***************999865 PP

>> TIGR03598  GTPase_YsxC: ribosome biogenesis GTP-binding protein YsxC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.1   1.3e-05    0.0046      19      45 ..      24      50 ..      18      53 .. 0.84

  Alignments for each domain:
  == domain 1    score: 14.5 bits;  conditional E-value: 1.3e-05
   TIGR03598 19 peiafaGrSNvGKSsliNaLtnrkkla 45
                 ++ ++G  NvGKSsl N Lt++   a
  MMETSP1137-20121227|7754_1 24 LKMGVVGLPNVGKSSLFNLLTQQAVAA 50
                567789****************98665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (401 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       140  (0.0341297); expected 82.0 (0.02)
Passed bias filter:                      120  (0.029254); expected 82.0 (0.02)
Passed Vit filter:                        19  (0.00463189); expected 4.1 (0.001)
Passed Fwd filter:                        12  (0.0029254); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.38u 0.16s 00:00:00.54 Elapsed: 00:00:00.38
# Mc/sec: 1392.83
//
Query:       MMETSP1137-20121227|7755_1  [L=339]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0088   11.3   0.1      0.011   11.0   0.1    1.1  1  TIGR03315 Se_ygfK: putative selenate reductase, YgfK subunit


Domain annotation for each model (and alignments):
>> TIGR03315  Se_ygfK: putative selenate reductase, YgfK subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.0   0.1   2.6e-06     0.011     662     698 ..      49      85 ..      27     158 .. 0.86

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 2.6e-06
   TIGR03315 662 klklGkrvvvvGgGntamdaaraalrvpGvekvtvvy 698
                 ++++Gk v+v+ gG+ a daa aa    Gv  v ++ 
  MMETSP1137-20121227|7755_1  49 ATEIGKPVTVLVGGENAKDAATAAASAAGVSSVVLLE 85 
                 6789***************************998775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (339 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       199  (0.0485129); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.27u 0.13s 00:00:00.40 Elapsed: 00:00:00.40
# Mc/sec: 1118.61
//
Query:       MMETSP1137-20121227|7757_1  [L=552]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (552 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        87  (0.0212092); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.14s 00:00:00.49 Elapsed: 00:00:00.51
# Mc/sec: 1428.59
//
Query:       MMETSP1137-20121227|7758_1  [L=461]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (461 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       159  (0.0387616); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.15s 00:00:00.47 Elapsed: 00:00:00.56
# Mc/sec: 1067.49
//
Query:       MMETSP1137-20121227|7759_1  [L=434]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (434 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       146  (0.0355924); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.13s 00:00:00.43 Elapsed: 00:00:00.43
# Mc/sec: 1332.17
//
Query:       MMETSP1137-20121227|7760_1  [L=408]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (408 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       189  (0.0460751); expected 82.0 (0.02)
Passed bias filter:                      131  (0.0319356); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.16s 00:00:00.48 Elapsed: 00:00:00.41
# Mc/sec: 1313.45
//
Query:       MMETSP1137-20121227|7761_1  [L=329]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.061   10.7   2.2      0.092   10.1   1.5    1.2  1  TIGR03593 yidC_nterm: membrane protein insertase, YidC/Oxa1 family, N-terminal domain


Domain annotation for each model (and alignments):
>> TIGR03593  yidC_nterm: membrane protein insertase, YidC/Oxa1 family, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   1.5   2.2e-05     0.092       5      65 ..      94     155 ..      93     176 .. 0.54

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 2.2e-05
   TIGR03593   5 ilavaLsfvilllwqawqkdpkpepqkppaaaqqaesqsaa.aaaaasaaaaasadapsaaa 65 
                 + +v+L+++ +ll+ ++ ++  + +  pp++  +a+++  a a ++++++aa+sa ++ aaa
  MMETSP1137-20121227|7761_1  94 VVLVLLAAIAVLLYFKFGPKDDKSARLPPPPPPAAAAAAVAaAVTSTATSAATSAASAVAAA 155
                 67889999999999999988888776666666665553333322222222222222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (329 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       387  (0.0943442); expected 82.0 (0.02)
Passed bias filter:                      184  (0.0448562); expected 82.0 (0.02)
Passed Vit filter:                        20  (0.00487567); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.15s 00:00:00.48 Elapsed: 00:00:00.45
# Mc/sec: 964.99
//
Query:       MMETSP1137-20121227|7762_1  [L=271]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (271 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        77  (0.0187713); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.16s 00:00:00.39 Elapsed: 00:00:00.35
# Mc/sec: 1021.97
//
Query:       MMETSP1137-20121227|7763_1  [L=493]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (493 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        64  (0.0156021); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.12s 00:00:00.46 Elapsed: 00:00:00.44
# Mc/sec: 1478.88
//
Query:       MMETSP1137-20121227|7764_1  [L=101]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        87  (0.0212092); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.13s 00:00:00.27 Elapsed: 00:00:00.26
# Mc/sec: 512.73
//
Query:       MMETSP1137-20121227|7765_1  [L=157]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (157 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       238  (0.0580205); expected 82.0 (0.02)
Passed bias filter:                      104  (0.0253535); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.15s 00:00:00.32 Elapsed: 00:00:00.73
# Mc/sec: 283.87
//
Query:       MMETSP1137-20121227|7766_1  [L=273]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.5e-14   50.2   0.1    8.5e-14   49.6   0.0    1.2  1  TIGR03341 YhgI_GntY: IscR-regulated protein YhgI
    1.3e-09   35.7   0.1    1.7e-09   35.3   0.1    1.2  1  TIGR02000 NifU_proper: Fe-S cluster assembly protein NifU
  ------ inclusion threshold ------
      0.024   11.4   0.0      0.033   11.0   0.0    1.1  1  TIGR02800 propeller_TolB: Tol-Pal system beta propeller repeat protein TolB


Domain annotation for each model (and alignments):
>> TIGR03341  YhgI_GntY: IscR-regulated protein YhgI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.6   0.0   6.2e-17   8.5e-14     101     183 ..     137     220 ..     128     226 .. 0.91

  Alignments for each domain:
  == domain 1    score: 49.6 bits;  conditional E-value: 6.2e-17
   TIGR03341 101 aedapleerieyvlqseinPqlaahGGevslveitdde.vavlkfgGGcnGcsavdvtlkegvekellekipelkgvkdatdhe 183
                 ++d+ +++ i+ +l+ +i P++ + GG++   +  +++ v++l++ G c Gc    vtlk g+e+ l++ ipe+k+v+ + d +
  MMETSP1137-20121227|7766_1 137 DDDSEVVQMIKELLELRIRPSVQEDGGDIVYRNFDEETgVVLLQMQGSCAGCPSSTVTLKAGIENMLMHYIPEVKEVRAVDDED 220
                 799*******************************998747889**********************************9887765 PP

>> TIGR02000  NifU_proper: Fe-S cluster assembly protein NifU
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.3   0.1   1.3e-12   1.7e-09     221     290 .]     143     216 ..     123     216 .. 0.86

  Alignments for each domain:
  == domain 1    score: 35.3 bits;  conditional E-value: 1.3e-12
   TIGR02000 221 iqkiekvl.eelrPtlqadgGdvelldvdgke..vkvkltGacsgcsssaatlki.iqqklverlgeflkvkav 290
                 +q i++ l   +rP +q dgGd+   + d+++  v ++++G+c+gc ss++tlk  i++ l++ + e  +v+av
  MMETSP1137-20121227|7766_1 143 VQMIKELLeLRIRPSVQEDGGDIVYRNFDEETgvVLLQMQGSCAGCPSSTVTLKAgIENMLMHYIPEVKEVRAV 216
                 677888884589***********99999887633777889*************988********9999998875 PP

>> TIGR02800  propeller_TolB: Tol-Pal system beta propeller repeat protein TolB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   2.4e-05     0.033     166     220 ..     126     180 ..     113     184 .. 0.88

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 2.4e-05
   TIGR02800 166 kgkkkyelavaDydganqqtilrsrepllsPawSpdgqklaYvsfekkkpeiyvq 220
                 + +++ +l + D d + +q+i +  e  + P++  dg +++Y  f++++ ++ +q
  MMETSP1137-20121227|7766_1 126 DDAERDSLLITDDDSEVVQMIKELLELRIRPSVQEDGGDIVYRNFDEETGVVLLQ 180
                 358899***************************************9988777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (273 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        65  (0.0158459); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.22u 0.13s 00:00:00.35 Elapsed: 00:00:00.38
# Mc/sec: 948.24
//
Query:       MMETSP1137-20121227|7769_1  [L=802]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   3.9e-216  717.1   0.0   4.8e-216  716.7   0.0    1.1  1  TIGR02506 NrdE_NrdA: ribonucleoside-diphosphate reductase, alpha subunit
    2.4e-95  318.2   0.0    3.4e-95  317.6   0.0    1.1  1  TIGR02504 NrdJ_Z: ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
    4.8e-68  227.8   0.0      1e-54  183.8   0.0    3.1  2  TIGR04170 RNR_1b_NrdE: ribonucleoside-diphosphate reductase, class 1b, alpha subunit
    7.7e-62  207.3   0.0    1.7e-24   84.0   0.0    3.2  3  TIGR02510 NrdE-prime: ribonucleoside-diphosphate reductase, alpha chain
    7.2e-11   38.8   0.1    1.8e-06   24.2   0.0    2.2  2  TIGR02505 RTPR: ribonucleoside-triphosphate reductase, adenosylcobalamin-dependent


Domain annotation for each model (and alignments):
>> TIGR02506  NrdE_NrdA: ribonucleoside-diphosphate reductase, alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  716.7   0.0  5.9e-219  4.8e-216       1     616 []     151     747 ..     151     747 .. 0.97

  Alignments for each domain:
  == domain 1    score: 716.7 bits;  conditional E-value: 5.9e-219
   TIGR02506   1 yaGlkellnryllrkaakkallelpqeaymrvalalasleeketaladaikfyellsrlkislatpvlanagtkksqlaSCfLleveddelesiskaikevaklskkggGiGlnlsklratgskirgsenkskgiipvlklldssveavnqg.gkRpgavavylevwHpdieefLelkknngeeerraknlfiglvipdlfmkrveedkdwtLfspqdvpeleelygeefeeeYerlekekeakkkikvsarelmkkilksavetGepYilfkdavN.khnpnklkgeaikmSNLCtEivqptdeeeevavCnLasvnlanfvlekeefdfekleeavqlavraldnvidlqnyptaeaaksnkrrrsiGiGvmgladvlaklglsYeseearalnkrifeaiyyaaikaSveLAkekGafegFeeskyakGllhidtwektieeleeakteedWeaLrekikeyGlrnsqllAlaPtassSqltgvtesiePvfsniftkktkkgeflkvNktLvkeleelglweaervgdiveavgsiqpieaiseelkekyktafeldqealiklaaarqkfvdqsiSlnlfleeekevtakkllkllllAwkkGlKT.mYYlrvk 616
                 y+G+k+l++ yll+ +  ++++e+pq+++mrva++++      ++l+ ai++yel+s+ ++++atp+++nagt+ +q++SCfLl+++dd++e i ++++ +a++sk++gGiG+++ ++ra+gs i+gs+++s+g++p+l+++d+++++v+qg gkR+ga+a+yle+wH+di  fL+lkkn+g+ee ra++lf++l++pdlfmkrve++ dw+Lf+p+++p+l +++geefe  Y+++e+e +a++k  ++a+ l+++il s++etG+pYil+kda+N k+n+++   ++i+ SNLCtEi+++t++e evavCnLas+ l++fv++   fd ++l ++ + ++r+l++vid+++yp++ea++sn+r+r+iG+Gv+glad +  l+l+++se ar++nk+ife+iyyaa++ S++LAk +G ++++e+s  +kG+l++d+w  t         + dW+aLr++i+e+G rns llA +Ptas++q+ g++e++eP++sni+t++ ++gef +vN++L+k+l  +glw++e++++i+++ gs+q+i++i+++lke ykt +e+++++li++aa+r  f+dqs+S+n+f++e   ++  kl ++++++w kGlKT mYYlr++
  MMETSP1137-20121227|7769_1 151 YFGFKTLEKAYLLKMN--GKIVERPQHMLMRVAIGIHK-----EDLDSAIQTYELMSQKWFTHATPTMFNAGTPCPQMSSCFLLSMKDDSIEGIFDTLSLCARISKSAGGIGISVHDVRAKGSYIKGSGGTSNGLVPMLRVFDNTARYVDQGgGKRKGAFAIYLEPWHADILAFLDLKKNHGKEEGRARDLFYALWVPDLFMKRVESNGDWSLFCPNEAPGLCDVWGEEFEALYAKYESEGRARQK--MPAQTLWFAILDSQIETGTPYILYKDAANrKSNQQN--LGTIRSSNLCTEIIEYTSPE-EVAVCNLASIALPRFVIDGV-FDHQRLYDVTYHVTRNLNRVIDANYYPVEEARTSNMRHRPIGLGVQGLADTFIHLRLPFDSEGARKVNKEIFETIYYAALCCSCDLAKVEGRYSSYEGSPISKGVLQFDMWGVTPG------DRWDWTALRARIAEHGTRNSLLLAPMPTASTAQILGNNECFEPYTSNIYTRRVLAGEFAVVNQHLLKDLMSQGLWTEEIRNQIIAHGGSVQNIPEIPQDLKELYKTCWEMKMRSLIDMAADRGAFIDQSQSFNVFMTE---PNYAKLSSMHFYGWNKGLKTgMYYLRTR 747
                 79*********99776..56*************96655.....5699********************************************************************************************************999******************************************************************************************99..*****************************6666666..56*****************9.8*****************76.****************************************************************************************************************6544......4589**************************************************************************************************************************************...**************************86 PP

>> TIGR02504  NrdJ_Z: ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  317.6   0.0   4.2e-98   3.4e-95       3     592 ..     155     739 ..     154     747 .. 0.90

  Alignments for each domain:
  == domain 1    score: 317.6 bits;  conditional E-value: 4.2e-98
   TIGR02504   3 kvlearyllkdedgeilespedlfrrvaealaaaeakeeseeleelaeefeellvelkfvpnsptlmnaagtelgqlsacfvlpveddles.IleaakeaaeifksGgGvGynfSelRpkgdvvrgtgGvaSGpvsfmrlfdsvtevvkqgg.kRRGAqmgilevdHPDieeFIeaKkkeeklaeaklqnfNiSVgvtdeFmeavekddeeyklenprtgeeeeelk..............vkvekevpareLwdkiveaAwksaePGllfldtiNrenpeakkallerinatNPCgEqpll....pyesCnLgsinLakfvkedadaefdleelaeavelatrflDnvidlnkfpleeieeaakktRriGLGimgladlLiklgipYdSeeavelaeevmevlaeeaykaSaelAkerGafplyekskeeeakvlrkkkalpkeleelierkkleekaekygiRNaalttiAPTGtiSllagtssGiEPvFalvykrkvavggeellevneeveealrekglyekeeelvkevaeegmsveglpevpeelkkvfvtasdvspedHvrmqaavqkwvdsaiSKTiNlpsdatvedveavYllawklglKG 592
                 k le++yllk + g+i+e p+++  rva ++ +++         ++a + +el++++ f  ++pt++n agt   q+s+cf l+++dd  + I++++   a+i ks gG+G++   +R+kg++++g+gG++ G v  +r+fd+++  v qgg kR+GA  + le +H Di  F++ Kk+++k  e   +   +   v d Fm+ ve+ + +++l  p ++   + +                  ++++pa++Lw +i ++  +++ P +l+ d +Nr+++   ++ l++i+++N C E+  +    +  +CnL+si L +fv +++   fd+++l  +   +tr l+ vid+n +p+ee ++ + + R iGLG+ glad+ i l +p+dSe a+++ +e++e+++++a+  S +lAk  G ++ ye s   +  + + +    +  +++ + ++l+ +++++g RN+ l++  PT ++  + g     EP+ + +y+r+v  g  e+ +vn+++ + l  +gl++  ee+ ++++++g+sv+++pe+p++lk+++ t  +++++  ++m a    ++d++ S  + + +    +++ ++ ++ w++glK 
  MMETSP1137-20121227|7769_1 155 KTLEKAYLLKMN-GKIVERPQHMLMRVAIGIHKEDL--------DSAIQTYELMSQKWFTHATPTMFN-AGTPCPQMSSCFLLSMKDDSIEgIFDTLSLCARISKSAGGIGISVHDVRAKGSYIKGSGGTSNGLVPMLRVFDNTARYVDQGGgKRKGAFAIYLEPWHADILAFLDLKKNHGK-EEGRARDLFYALWVPDLFMKRVES-NGDWSLFCPNEAPGLCDVWgeefealyakyeseGRARQKMPAQTLWFAILDSQIETGTPYILYKDAANRKSN---QQNLGTIRSSNLCTEIIEYtspeEVAVCNLASIALPRFVIDGV---FDHQRLYDVTYHVTRNLNRVIDANYYPVEEARTSNMRHRPIGLGVQGLADTFIHLRLPFDSEGARKVNKEIFETIYYAALCCSCDLAKVEGRYSSYEGSPISKGVL-QFDMWGVTPGDRWDW-TALRARIAEHGTRNSLLLAPMPTASTAQILGNNECFEPYTSNIYTRRVLAG--EFAVVNQHLLKDLMSQGLWT--EEIRNQIIAHGGSVQNIPEIPQDLKELYKTCWEMKMRSLIDMAADRGAFIDQSQSFNVFMTE-PNYAKLSSMHFYGWNKGLKT 739
                 578999988887.66****************99996........3466899*****************.9***************9976656***********************************************************99**************************998.5689999999**************.577777777776666655466677777777766567899*****************************9995...3469***********876422225679*************886...***************************************************************************************************6665544.333333344444444.357899********************************************9..8*****************99..89***************************************************999998864.55778999999999999986 PP

>> TIGR04170  RNR_1b_NrdE: ribonucleoside-diphosphate reductase, class 1b, alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  183.8   0.0   1.2e-57     1e-54      77     596 ..     141     632 ..      90     642 .. 0.86
   2 !   36.2   0.0   5.5e-13   4.5e-10     608     684 ..     674     750 ..     659     760 .. 0.90

  Alignments for each domain:
  == domain 1    score: 183.8 bits;  conditional E-value: 1.2e-57
   TIGR04170  77 eakakkfrfksflsaykfykdyalktndgkkyledyedrvalvaltladGdeekakdlvdeiieqryqPatPtflnaGkkrrGelvscfllrve.dnlesigrainsalqlskiGGGvalllsklreaGaaikkienaasGvvpvmklledafsyanql.GqrqGaGavylnifhpdilefldtkkenadekvrvktlslGvviPdkffelakenedlylfsPyd...vekeyGkplddidltekydelvaderirkkkinarelleklaelqlesGyPyimfedtvnkana..iegkikmsnlcseilqvseaslynddleedeigkdiscnlGslnivnvmespdfektvetavraltavsdesdiksvPsvkkgnseahaiGlGamnlhgylarekiaygseeavdftniyfmlvnyyalrrsneiakerGetfkdfeksdyasGey.fdkyvsqefaPktekvkelfegiaiPtaedwaelkdkveeeGlynqyrlavaPtgsisyindstssihPivekieer 596
                  +++++f+++ +++     k y lk n   k++e+ ++ ++ va+ + + d + a +  + + ++ +  atPt++naG     ++ scfll ++ d++e i  + + + ++sk  GG+++ + ++r++G  ik+  ++++G+vp++++++++ +y +q  G+r+Ga a+yl+ +h dil+fld kk    e+ r + l   + +Pd f++    n d  lf P +   +  ++G++++       y +  ++ r +++k+ a+ l   + + q+e+G Pyi+++d++n+     + g i+ snlc+ei+   ++        e  + +  s  l    i  v +++ + +     +r l  v d  +   v   + +n + + iGlG+ +l   + + ++ ++se a+   +  f ++ y al  s ++ak +G +++ +e s  ++G   fd +                 g++   + dw++l+++++e+G  n+ +la  Pt s + i        P +++i +r
  MMETSP1137-20121227|7769_1 141 IVYDRDFEYD-YFGFKTLEKAYLLKMNG--KIVERPQHMLMRVAIGIHKEDLDSAIQTYELMSQKWFTHATPTMFNAGTP-CPQMSSCFLLSMKdDSIEGIFDTLSLCARISKSAGGIGISVHDVRAKGSYIKGSGGTSNGLVPMLRVFDNTARYVDQGgGKRKGAFAIYLEPWHADILAFLDLKKNHGKEEGRARDLFYALWVPDLFMKRVESNGDWSLFCPNEapgLCDVWGEEFEA-----LYAKYESEGR-ARQKMPAQTLWFAILDSQIETGTPYILYKDAANRKSNqqNLGTIRSSNLCTEIIEYTSPE-------EVAVCNLASIALPRFVIDGVFDHQRLYDVTYHVTRNLNRVIDA-NYYPVEEARTSNMRHRPIGLGVQGLADTFIHLRLPFDSEGARKVNKEIFETIYYAALCCSCDLAKVEG-RYSSYEGSPISKGVLqFDMW-----------------GVTPGDRWDWTALRARIAEHGTRNSLLLAPMPTASTAQILGNNECFEPYTSNIYTR 632
                 5678888886.55666677889999985..699*****************************999*************86.5789******9962679************************************************************7368*************************************************************9822234666766654.....5666656666.567899***************************97665688************9876653.......3345556677888888999**********************95.67889999**********************************************************99.699*****999997424433.................44444566788888888888888888888888888887777777777777777666 PP

  == domain 2    score: 36.2 bits;  conditional E-value: 5.5e-13
   TIGR04170 608 apflaeenleyykdayeidaekvidlyaaitkhvdqGlsltlflkdtattrdlnrlqiyafkkGikt.lyyirlkqla 684
                 +p ++++  e+yk  +e+ ++ +id+ a    ++dq  s+ +f+ +      l+ ++ y ++kG+kt +yy+r++  a
  MMETSP1137-20121227|7769_1 674 IPEIPQDLKELYKTCWEMKMRSLIDMAADRGAFIDQSQSFNVFMTEPNY-AKLSSMHFYGWNKGLKTgMYYLRTRAAA 750
                 6788899999**********************************98765.57**************889*****9865 PP

>> TIGR02510  NrdE-prime: ribonucleoside-diphosphate reductase, alpha chain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.0   0.0     2e-20   1.6e-17      22     207 ..     153     348 ..     133     355 .. 0.78
   2 !   58.2   0.0   1.4e-19   1.2e-16     215     381 ..     393     556 ..     374     568 .. 0.86
   3 !   84.0   0.0   2.1e-27   1.7e-24     389     548 ..     596     753 ..     589     762 .. 0.93

  Alignments for each domain:
  == domain 1    score: 61.0 bits;  conditional E-value: 2e-20
   TIGR02510  22 arsflrrgyllk..Gesveervreiaeraek.ldkvegfeerffeylarGkyslatPvfanfGldrGlPiscaG.syvedsvedileaqaevgmlaknGgGtssylGdvrPrGadisdn.gesngayalaslfdkvinvvsqget.rrGefagyvdvehpdleellsiqlen....davqsllygvevgddwlekl 207
                 +   l + yllk  G+ ve   + + + a + +++  + + + +e++ + +++ atP + n G+      sc+  s  +ds+e i+++ +  + ++k  gG    + dvr +G+ i+ + g+sng  ++ ++fd+    v qg + r+G fa y++  h+d+  +l++++++       + l+y++ v d ++ ++
  MMETSP1137-20121227|7769_1 153 GFKTLEKAYLLKmnGKIVERPQHMLMRVAIGiHKEDLDSAIQTYELMSQKWFTHATPTMFNAGTPCPQMSSCFLlSMKDDSIEGIFDTLSLCARISKSAGGIGISVHDVRAKGSYIKGSgGTSNGLVPMLRVFDNTARYVDQGGGkRKGAFAIYLEPWHADILAFLDLKKNHgkeeGRARDLFYALWVPDLFMKRV 348
                 45667888887632544544333333333331333335566889**********************9999**963778999***********************************987369****************9999876367***************999988765111145678999999988877765 PP

  == domain 2    score: 58.2 bits;  conditional E-value: 1.4e-19
   TIGR02510 215 rarWakllksraevGipyllfrdnanekaPqvikdkGidirasnlcteialPsdeeesfvcilsslnvlly..deikdtdavetlvrfldsvldefiekakglayleravrfaeraraiGlGvlGfhsylqsnrialesaeasllnaeiyktikeraeeasrelaeryg 381
                 +++W  +l+s++e+G py+l++d an k+ q  +++G +ir+snlctei+  +++ee  vc l+s+ +  +  d + d   +  ++  +   l+  i+  +    +e a     r+r iGlGv G    +   r++++s  a   n ei++ti  +a  +s  la+  g
  MMETSP1137-20121227|7769_1 393 QTLWFAILDSQIETGTPYILYKDAANRKSNQ--QNLG-TIRSSNLCTEIIEYTSPEEVAVCNLASIALPRFviDGVFDHQRLYDVTYHVTRNLNRVIDA-N-YYPVEEARTSNMRHRPIGLGVQGLADTFIHLRLPFDSEGARKVNKEIFETIYYAALCCSCDLAKVEG 556
                 578***********************99987..6787.7***************************997764477777777777777777777777764.3.334788888899************9999999*****************************9998655 PP

  == domain 3    score: 84.0 bits;  conditional E-value: 2.1e-27
   TIGR02510 389 kgrrnatllaiaPtkssalilGqvspsiePlvsnyfvqdsakakvvfknPvlekvlkekgkdeekvedeialhnGsvqhldfltdeeksvfktfaeisqmaiidlaaarqkhidqaqslnlvidadekeskdvnvlvveawkkglks.lyyqrseraakaf 548
                 +g rn+ lla  Pt s+a ilG+  +  eP++sn + +   +++++  n +l k l  +g  +e + ++i+ h Gsvq +  +  + k+++kt  e++  ++id+aa r   idq+qs+n+++     +  +++ ++ + w+kglk+ +yy+r++ aa a 
  MMETSP1137-20121227|7769_1 596 HGTRNSLLLAPMPTASTAQILGN-NECFEPYTSNIYTRRVLAGEFAVVNQHLLKDLMSQGLWTEEIRNQIIAHGGSVQNIPEIPQDLKELYKTCWEMKMRSLIDMAADRGAFIDQSQSFNVFMTE--PNYAKLSSMHFYGWNKGLKTgMYYLRTRAAADAI 753
                 689*******************8.689*********************************************************************************************99975..667788889999*******659*****9999885 PP

>> TIGR02505  RTPR: ribonucleoside-triphosphate reductase, adenosylcobalamin-dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.2   0.1   9.3e-06    0.0076     212     254 ..     256     298 ..     241     307 .. 0.86
   2 !   24.2   0.0   2.2e-09   1.8e-06     323     455 ..     377     522 ..     367     540 .. 0.73

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 9.3e-06
   TIGR02505 212 lDlSdvRpaGeklkgfGgtasGpvklaklltevaeiLskkagg 254
                 + + dvR+ G  +kg Ggt++G v++  ++ + a+   +  g+
  MMETSP1137-20121227|7769_1 256 ISVHDVRAKGSYIKGSGGTSNGLVPMLRVFDNTARYVDQGGGK 298
                 6688**************************9999987766665 PP

  == domain 2    score: 24.2 bits;  conditional E-value: 2.2e-09
   TIGR02505 323 larskadlleteelkqerldlalsegkiengewlqtdssl....edageaeevkgtNPCgEI....llankepCNLaevnllaieedkevdle...rafklaarsvarltfsal.edeksrevlaknrriGvsftGlad.flvlal 455
                 +a+ + + +  +++ +++l  a  + +ie g +    +      +++++++ +   N C EI    + ++   CNLa + l  ++ d+  d +   ++ + ++r + r++  ++  +e  r +  + r iG+++ Glad f++l+l
  MMETSP1137-20121227|7769_1 377 YAKYESEGRARQKMPAQTLWFAILDSQIETGTPYILYKDAanrkSNQQNLGTIRSSNLCTEIieytSPEEVAVCNLASIALPRFVIDGVFDHQrlyDVTYHVTRNLNRVIDANYyPVEEARTSNMRHRPIGLGVQGLADtFIHLRL 522
                 66777777777777788888888888888888765544330011344444559999******43333578899*************99866551115667899*****998875279*********************94445554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (802 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       117  (0.0285227); expected 82.0 (0.02)
Passed bias filter:                      107  (0.0260848); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.70u 0.16s 00:00:00.86 Elapsed: 00:00:00.90
# Mc/sec: 1176.17
//
Query:       MMETSP1137-20121227|7771_1  [L=652]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.3e-77  257.5   0.0    3.5e-61  205.4   0.0    2.0  2  TIGR02730 carot_isom: carotene isomerase
    2.5e-40  136.4   0.2    4.1e-24   83.0   0.0    2.4  2  TIGR02734 crtI_fam: phytoene desaturase
      7e-30  101.9   0.0      3e-16   57.0   0.3    2.1  2  TIGR02733 desat_CrtD: C-3',4' desaturase CrtD
    2.3e-15   54.7   0.5    6.1e-10   36.8   0.0    3.0  3  TIGR03467 HpnE: squalene-associated FAD-dependent desaturase
    1.1e-07   29.1   0.5    2.6e-07   27.9   0.4    1.6  1  TIGR00292 TIGR00292: thiazole biosynthesis enzyme
    2.7e-06   24.0   0.0    4.6e-06   23.3   0.0    1.3  1  TIGR00562 proto_IX_ox: protoporphyrinogen oxidase
    1.1e-05   21.2   0.8    1.6e-05   20.7   0.5    1.1  1  TIGR01372 soxA: sarcosine oxidase, alpha subunit family
    1.3e-05   22.3   0.9      2e-05   21.6   0.6    1.2  1  TIGR03364 HpnW_proposed: FAD dependent oxidoreductase TIGR03364
    2.8e-05   20.5   0.9    3.1e-05   20.4   0.0    1.4  2  TIGR03997 mycofact_OYE_2: mycofactocin system FadH/OYE family oxidoreductase 2
    6.5e-05   20.6   1.8    0.00015   19.4   1.2    1.6  1  TIGR02032 GG-red-SF: geranylgeranyl reductase family
    0.00012   19.2   2.3     0.0006   16.8   0.7    2.1  2  TIGR02352 thiamin_ThiO: glycine oxidase ThiO
    0.00014   18.7   0.6     0.0002   18.2   0.4    1.1  1  TIGR01317 GOGAT_sm_gam: glutamate synthase, NADH/NADPH, small subunit
    0.00016   17.1   0.2    0.00022   16.6   0.1    1.1  1  TIGR03315 Se_ygfK: putative selenate reductase, YgfK subunit
     0.0002   17.8   0.6    0.00032   17.1   0.4    1.2  1  TIGR03996 mycofact_OYE_1: mycofactocin system FadH/OYE family oxidoreductase 1
    0.00022   18.0   0.1       0.25    7.9   0.2    2.3  2  TIGR00275 TIGR00275: flavoprotein, HI0933 family
    0.00023   17.9   1.0    0.00049   16.8   0.3    1.7  2  TIGR01813 flavo_cyto_c: flavocytochrome c
    0.00046   16.9   1.8       0.16    8.5   0.3    2.2  2  TIGR02485 CobZ_N-term: precorrin 3B synthase CobZ
    0.00048   16.7   1.1     0.0042   13.7   0.1    2.1  2  TIGR00551 nadB: L-aspartate oxidase
    0.00087   16.3   0.9     0.0016   15.4   0.6    1.4  1  TIGR03197 MnmC_Cterm: tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain
      0.002   14.6   0.1     0.0032   13.9   0.1    1.2  1  TIGR01318 gltD_gamma_fam: glutamate synthase, small subunit
     0.0021   14.7   0.0      0.038   10.5   0.0    2.1  2  TIGR02731 phytoene_desat: phytoene desaturase
     0.0034   14.2   0.1     0.0047   13.8   0.0    1.1  1  TIGR00031 UDP-GALP_mutase: UDP-galactopyranose mutase
     0.0039   14.1   0.5     0.0063   13.4   0.3    1.3  1  TIGR02023 BchP-ChlP: geranylgeranyl reductase
     0.0039   13.8   0.6     0.0078   12.8   0.4    1.4  1  TIGR01350 lipoamide_DH: dihydrolipoyl dehydrogenase
     0.0077   12.9   0.3      0.012   12.2   0.2    1.2  1  TIGR01316 gltA: glutamate synthase (NADPH), homotetrameric
  ------ inclusion threshold ------
      0.011   12.7   0.3      0.023   11.6   0.2    1.5  1  TIGR03911 pyrrolys_PylD: pyrrolysine biosynthesis protein PylD
      0.023   11.4   0.2      0.037   10.7   0.2    1.3  1  TIGR02732 zeta_caro_desat: carotene 7,8-desaturase
      0.028   11.4   0.1      0.041   10.8   0.1    1.2  1  TIGR01790 carotene-cycl: lycopene cyclase family protein
      0.029   10.8   0.7      0.043   10.2   0.5    1.2  1  TIGR01424 gluta_reduc_2: glutathione-disulfide reductase
      0.035   10.7   1.7      0.026   11.1   0.2    1.5  2  TIGR01292 TRX_reduct: thioredoxin-disulfide reductase
      0.038   10.1   1.1       0.36    6.9   0.2    2.0  2  TIGR00136 gidA: tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
      0.049   10.0   0.6      0.087    9.1   0.1    1.5  2  TIGR03140 AhpF: alkyl hydroperoxide reductase, F subunit
      0.075   10.0   1.2       0.11    9.5   0.8    1.2  1  TIGR01421 gluta_reduc_1: glutathione-disulfide reductase
      0.086    9.2   0.5       0.14    8.5   0.3    1.2  1  TIGR03143 AhpF_homolog: putative alkyl hydroperoxide reductase F subunit
       0.45    6.8   3.6          2    4.6   0.1    2.2  2  TIGR03377 glycerol3P_GlpA: glycerol-3-phosphate dehydrogenase, anaerobic, A subunit


Domain annotation for each model (and alignments):
>> TIGR02730  carot_isom: carotene isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.1   0.0   3.4e-16   3.9e-14       2      82 ..     130     209 ..     129     243 .. 0.88
   2 !  205.4   0.0     3e-63   3.5e-61     177     489 ..     310     630 ..     303     633 .. 0.89

  Alignments for each domain:
  == domain 1    score: 50.1 bits;  conditional E-value: 3.4e-16
   TIGR02730   2 daivigsgigglvtatqlaakgakvlvlekylipggsagyferegykfdvgaslifgfgdkgttnlltralaavgekleti 82 
                 d++v+gsgiggl +a+ l+  g +v vle++ i gg+a  fer gy fd g sl  g +   +tn l + l a++e+ + +
  MMETSP1137-20121227|7771_1 130 DVLVVGSGIGGLSAAALLSRYGYRVSVLERHTIAGGAAHSFERGGYIFDSGPSLWSGCAV-PSTNPLRQVLDAIDESPDWV 209
                 89****************************************************999865.67899999999999887665 PP

  == domain 2    score: 205.4 bits;  conditional E-value: 3e-63
   TIGR02730 177 rkyikdpellkfidiecfiwsvvpadltpminagmvlsdrhygg..inypkggvgeiaeklvkglekaggkirykarvtkiilendkavgvkladgekirakr.ivsnatrwdtfgkllke..enlpkkekkfrkaykkspsflslhlgvkadllpegt..echhllledwenlekeegtifvsiptlldpelapegyhiihtftpss..ledweglspk..dyeakkeadaarlidrlekilpgldealdykevgtprshrrflgredgtygpiprrklkgllsmpfnrtaidglycvgdstfpgqglnavafsgfacahrva 489
                 r  + dp l ++ d   f +s + +d t      ++l+d ++ g  ++yp+gg g + + lv+g+ k+gg +r  ++v+++++e++++vgv l dge++r+ + ++sna  w t + l ++  ++   +++   +a  ++psf+ lh+g  a+ l +++    hh+++  w+ l+ ++ ++fvs+p+lldp+l+peg h++h++ p++  +e+w +l  k   y+  k + a+ l   +e  +p + e  + + +g+p +h rfl+r+ gtygp  +    g  ++   ++ ++gl c gdst+pg g+ ava sg+a ah +a
  MMETSP1137-20121227|7771_1 310 RAGVTDPFLRNWFDFLAFAFSGLRSDGTVAAAMVFMLADFYADGakMDYPVGGSGAVVDALVRGVTKHGGSVRVGCEVSSLLVEEGRCVGVCLKDGEELRCTTaVISNADVWATAALLPPAmrAHFRGRDEGLDEATPETPSFMHLHIGFDAKGLSDQAlrSIHHIVVPKWDLLDAPQSAVFVSVPSLLDPSLSPEGKHVLHAYLPATepFEQWANLDRKsrAYRDLKRERAECLYRAIELFIPDIRERAQVTMIGSPLTHARFLARHRGTYGPAIAA---GKSTFAGAKSKLPGLLCCGDSTWPGIGVPAVAGSGIAAAHAIA 630
                 67789999*****************99865444445679888874578***************************************************9764399********98886541167789999**********************9998754489*****************************************8764339******8652279**************************************************7765...5566777899******************************997 PP

>> TIGR02734  crtI_fam: phytoene desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.2   0.6   2.9e-16   3.4e-14       1      53 [.     131     183 ..     131     190 .. 0.96
   2 !   83.0   0.0   3.5e-26   4.1e-24     171     499 ..     313     640 ..     300     645 .. 0.79

  Alignments for each domain:
  == domain 1    score: 50.2 bits;  conditional E-value: 2.9e-16
   TIGR02734   1 avViGaGlgGLAlAirLaaaGievtvlekrdkpGGRagvleedGfrfDtGPtv 53 
                 ++V+G+G+gGL++A++L + G++v vle+++  GG a ++e+ G+ fD GP++
  MMETSP1137-20121227|7771_1 131 VLVVGSGIGGLSAAALLSRYGYRVSVLERHTIAGGAAHSFERGGYIFDSGPSL 183
                 68*************************************************97 PP

  == domain 2    score: 83.0 bits;  conditional E-value: 3.5e-26
   TIGR02734 171 ikderLrqilsfhal.fvggnPfkass...iYalisaleleaGVwfprGGtsalvealaklaedlggelrlnaeveeietegerataveledgerlead.avvsnaDlvhtykkllreeer.rrksekklskkrl.slslvvlyfGl..kGvegelpqlaHHtllfgerykelieeifkkselaedfslylvsptvtdpslAPegkeslyvLvPvphlga.....aadvdwskegerlrdrilaeleeralpdlrerivverlltPadfedelnaalGsafslehtltQsaffRprnrsekvdnlylvGagThPGvGvPgvliSaklvakliledlaaeplae 499
                 + d+ Lr+ + f a  f g +   + +   ++ l       a   +p GG +a+v+al++ +++ gg++r+  ev+++ +e++r  +v l+dge+l++  av+snaD+  t + l ++ ++  r +++ l++ ++  +s + l++G   kG + +     HH ++  ++++     + ++ +    +++++  p+  dpsl Pegk+ l+   P+++        + + ++ +  +r r + l    e  +pd+rer +v+ + +P ++++ l a + ++ +++     s f     +++k+ +l   G  T PG+GvP v +S+ ++a++i +++++++l +
  MMETSP1137-20121227|7771_1 313 VTDPFLRNWFDFLAFaFSGLRSDGTVAaamVFMLADFYADGAKMDYPVGGSGAVVDALVRGVTKHGGSVRVGCEVSSLLVEEGRCVGVCLKDGEELRCTtAVISNADVWATAALLPPAMRAhFRGRDEGLDEATPeTPSFMHLHIGFdaKGLSDQALRSIHHIVV--PKWD-----LLDAPQ----SAVFVSVPSLLDPSLSPEGKHVLHAYLPATEPFEqwanlDRKSRAYRDLKRERAECLYRAIELFIPDIRERAQVTMIGSPLTHARFL-ARHRGTYGPAIAAGKSTFA---GAKSKLPGLLCCGDSTWPGIGVPAVAGSGIAAAHAIADADKQKQLLN 640
                 789999999999987254544443333111455555555556678****************************************************9538**********998877655314667888887776256666688887225665555556688765..7885.....444444....78899999********************995432566666666667777778888888888889******************99955.5555579***999999986...46789*******************************99988876655 PP

>> TIGR02733  desat_CrtD: C-3',4' desaturase CrtD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.0   0.3   2.5e-18     3e-16       3      54 ..     130     181 ..     128     188 .. 0.94
   2 !   42.5   0.0   6.3e-14   7.4e-12     234     489 ..     366     630 ..     315     633 .. 0.79

  Alignments for each domain:
  == domain 1    score: 57.0 bits;  conditional E-value: 2.5e-18
   TIGR02733   3 svvviGaGiaGltaaallakrGlevtlleaaaqvGGCastfkrrgfifdvGa 54 
                 +v+v+G+Gi+Gl aaall++ G++v +le ++++GG a  f r+g+ifd G 
  MMETSP1137-20121227|7771_1 130 DVLVVGSGIGGLSAAALLSRYGYRVSVLERHTIAGGAAHSFERGGYIFDSGP 181
                 79***********************************************996 PP

  == domain 2    score: 42.5 bits;  conditional E-value: 6.3e-14
   TIGR02733 234 lsdrlvealkkdggelllgqrveaietkeekaeakvvvdsrkkekeevkaddvvanlpaqsllelleeaalskgyrkr...lk.klpepsGalvlylavkkaalpvd........cpphlqflsdeqGslfvsv.skegdgraPkGeatliass..ftdvdeWssleee..dytakkkeytktilerleekfdleeeelvhkelatPrtferytarpeGivG.GlgqrlstfGpfglasrtPlkglWlvGdsiyPGeGtaGvsysalavvrqll 489
                 + d+lv ++ k+gg++ +g  v+++ ++e++ +++  +d    e+ +  +  v+ n  +++   ll+  a+  ++r r   l+  +pe++  + l+ + +++ l  +        + p   +l+ +q ++fvsv s  +   +P+G++ l a        ++W +l+++  +y+  k+e ++ + +++e ++   +e+ + + ++ P t +r+ ar++G  G  ++   stf      +++ l gl  +Gds++PG G   v+ s +a+++ + 
  MMETSP1137-20121227|7771_1 366 VVDALVRGVTKHGGSVRVGCEVSSLLVEEGRCVGVCLKDG---EELR-CTTAVISNADVWATAALLP-PAMRAHFRGRdegLDeATPETPSFMHLHIGFDAKGLSDQalrsihhiVVPKWDLLDAPQSAVFVSVpSLLDPSLSPEGKHVLHAYLpaTEPFEQWANLDRKsrAYRDLKRERAECLYRAIELFIPDIRERAQVTMIGSPLTHARFLARHRGTYGpAIAAGKSTFA----GAKSKLPGLLCCGDSTWPGIGVPAVAGSGIAAAHAIA 630
                 579************************9999998888776...3333.3456999999999999998.677777776622243145777788888888777655443111001114556667778888******444555789*******99762144689****9865228*************************************************945777778875....4678899****************99999988887765 PP

>> TIGR03467  HpnE: squalene-associated FAD-dependent desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.8   0.0   5.2e-12   6.1e-10       1      62 [.     131     190 ..     131     212 .. 0.87
   2 !   13.5   0.0   6.3e-05    0.0074     207     274 ..     363     430 ..     305     464 .. 0.79
   3 ?    0.9   0.1      0.42        49     362     428 ..     564     629 ..     532     631 .. 0.71

  Alignments for each domain:
  == domain 1    score: 36.8 bits;  conditional E-value: 5.2e-12
   TIGR03467   1 vvvvGgGlAGLaAAveLaraGvrvtllEarrqlGGRarsfedgslgetiDngqHvllgayte 62 
                 v+vvG G+ GL+AA+ L+r G+rv++lE+   +GG a sfe+g+    +D g  +  g+   
  MMETSP1137-20121227|7771_1 131 VLVVGSGIGGLSAAALLSRYGYRVSVLERHTIAGGAAHSFERGGYI--FDSGPSLWSGCAVP 190
                 79****************************************9998..99999888887654 PP

  == domain 2    score: 13.5 bits;  conditional E-value: 6.3e-05
   TIGR03467 207 selfvepaarylesrggevrlgtrvreleasaggiralveaaeetla.adavvlAvpperaasllpeed 274
                 s   v+ ++r ++++gg+vr+g++v++l +++g+       ++e+l   +av+  +  +  a+llp  +
  MMETSP1137-20121227|7771_1 363 SGAVVDALVRGVTKHGGSVRVGCEVSSLLVEEGRCVGVCLKDGEELRcTTAVISNADVWATAALLPP-A 430
                 444566789999*********************9887777677775515566666778999999998.3 PP

  == domain 3    score: 0.9 bits;  conditional E-value: 0.42
   TIGR03467 362 aeakllkakvikekrAtF..aatpglerlRPgartplpnlfLAGDwtatg..yPATlEgAvrSGvqAAeav 428
                  + +l++a+  + +r t+  a ++g      ga+++lp+l   GD t++g   PA     + SG +AA a+
  MMETSP1137-20121227|7771_1 564 IGSPLTHARFLARHRGTYgpAIAAGKS-TFAGAKSKLPGLLCCGDSTWPGigVPAV----AGSGIAAAHAI 629
                 455666677777777777333444444.556899*************998556774....56888888887 PP

>> TIGR00292  TIGR00292: thiazole biosynthesis enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.9   0.4   2.3e-09   2.6e-07      17      67 ..     124     177 ..     113     179 .. 0.83

  Alignments for each domain:
  == domain 1    score: 27.9 bits;  conditional E-value: 2.3e-09
   TIGR00292  17 ldyaesDviivGaGpsGLtaayylakeglkvvvlerklaiGGGsw...gGGmlf 67 
                 l+ a +Dv++vG+G  GL+aa  l++ g++v vler+   GG       GG +f
  MMETSP1137-20121227|7771_1 124 LKAATADVLVVGSGIGGLSAAALLSRYGYRVSVLERHTIAGGAAHsfeRGGYIF 177
                 67899********************************99999764122466666 PP

>> TIGR00562  proto_IX_ox: protoporphyrinogen oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.3   0.0   3.9e-08   4.6e-06       2      58 ..     128     182 ..     127     191 .. 0.95

  Alignments for each domain:
  == domain 1    score: 23.3 bits;  conditional E-value: 3.9e-08
   TIGR00562   2 kkkvvvvGgGisGLciayalekerpdvelvlvEakdRvGGkiyTrkesGyllEkGpr 58 
                 +++v vvG+Gi GL++a  l++   +  + ++E +   GG  +  ++ Gy+++ Gp 
  MMETSP1137-20121227|7771_1 128 TADVLVVGSGIGGLSAAALLSRY--GYRVSVLERHTIAGGAAHSFERGGYIFDSGPS 182
                 689******************99..999***************************96 PP

>> TIGR01372  soxA: sarcosine oxidase, alpha subunit family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.7   0.5   1.4e-07   1.6e-05     167     209 ..     127     169 ..     115     176 .. 0.90

  Alignments for each domain:
  == domain 1    score: 20.7 bits;  conditional E-value: 1.4e-07
   TIGR01372 167 ahcDvLvvGaGpaGLaaAraAaraGarvilvdeqaeaGGslls 209
                 a +DvLvvG+G  GL+aA   +r G rv +++ ++ aGG+ +s
  MMETSP1137-20121227|7771_1 127 ATADVLVVGSGIGGLSAAALLSRYGYRVSVLERHTIAGGAAHS 169
                 678************************************9875 PP

>> TIGR03364  HpnW_proposed: FAD dependent oxidoreductase TIGR03364
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.6   0.6   1.7e-07     2e-05       2      39 ..     130     167 ..     129     172 .. 0.95

  Alignments for each domain:
  == domain 1    score: 21.6 bits;  conditional E-value: 1.7e-07
   TIGR03364   2 dvvvvGaGivGlahAlaaarrGlkVtvierssraaGAs 39 
                 dv+vvG+Gi Gl+ A+  +r G +V v+er+  a GA+
  MMETSP1137-20121227|7771_1 130 DVLVVGSGIGGLSAAALLSRYGYRVSVLERHTIAGGAA 167
                 9*******************************999995 PP

>> TIGR03997  mycofact_OYE_2: mycofactocin system FadH/OYE family oxidoreductase 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   0.0   2.7e-07   3.1e-05     370     418 ..     121     167 ..      97     175 .. 0.84
   2 ?   -3.3   0.1       3.9   4.5e+02     432     473 ..     365     406 ..     361     427 .. 0.75

  Alignments for each domain:
  == domain 1    score: 20.4 bits;  conditional E-value: 2.7e-07
   TIGR03997 370 avtlkkarrrkkvlvvGgGPaGleaaataarrGhrvtllereeelGGqv 418
                 +++lk a++   vlvvG+G +Gl+aaa  +r G+rv +ler++  GG+ 
  MMETSP1137-20121227|7771_1 121 STALKAATA--DVLVVGSGIGGLSAAALLSRYGYRVSVLERHTIAGGAA 167
                 455555555..8***********************************86 PP

  == domain 2    score: -3.3 bits;  conditional E-value: 3.9
   TIGR03997 432 elvrdlaselkelgvevklGveadaelvlaekPDavvlatGs 473
                 ++v+ l++ +++ g +v++G e+++ lv++ +   v l  G 
  MMETSP1137-20121227|7771_1 365 AVVDALVRGVTKHGGSVRVGCEVSSLLVEEGRCVGVCLKDGE 406
                 689999999999999999999999988888887777776664 PP

>> TIGR02032  GG-red-SF: geranylgeranyl reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   1.2   1.3e-06   0.00015       2      34 ..     130     162 ..     129     167 .. 0.94

  Alignments for each domain:
  == domain 1    score: 19.4 bits;  conditional E-value: 1.3e-06
   TIGR02032   2 DvvvvGaGpaGssaAlrlakkGlrVlllekkel 34 
                 Dv+vvG G+ G saA+ l++ G+rV +le++ +
  MMETSP1137-20121227|7771_1 130 DVLVVGSGIGGLSAAALLSRYGYRVSVLERHTI 162
                 ******************************976 PP

>> TIGR02352  thiamin_ThiO: glycine oxidase ThiO
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.7   5.1e-06    0.0006       1      38 [.     131     168 ..     131     170 .. 0.96
   2 ?    1.0   0.0      0.32        38     152     203 ..     365     417 ..     362     436 .. 0.80

  Alignments for each domain:
  == domain 1    score: 16.8 bits;  conditional E-value: 5.1e-06
   TIGR02352   1 vlviGgGviGlsvAveLakrghkvtllekdevgsgAsk 38 
                 vlv+G G+ Gls A  L++ g +v +le++++++gA++
  MMETSP1137-20121227|7771_1 131 VLVVGSGIGGLSAAALLSRYGYRVSVLERHTIAGGAAH 168
                 79*********************************997 PP

  == domain 2    score: 1.0 bits;  conditional E-value: 0.32
   TIGR02352 152 ellkaLvkaleklGveiieevevqeieargekvtavktsse.kvqadqvvlaa 203
                 ++++aLv+++ k G++++  +ev ++  ++ + ++v  +++ ++ + + v+++
  MMETSP1137-20121227|7771_1 365 AVVDALVRGVTKHGGSVRVGCEVSSLLVEEGRCVGVCLKDGeELRCTTAVISN 417
                 6899*********************9999999998877766578888888776 PP

>> TIGR01317  GOGAT_sm_gam: glutamate synthase, NADH/NADPH, small subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.4   1.7e-06    0.0002     140     180 ..     125     165 ..     117     169 .. 0.88

  Alignments for each domain:
  == domain 1    score: 18.2 bits;  conditional E-value: 1.7e-06
   TIGR01317 140 krtGkkvavvGsGPaGlaaadqlnraGhtvtvferedrvGG 180
                 k +   v vvGsG  Gl+aa+ l+r G+ v+v er+  +GG
  MMETSP1137-20121227|7771_1 125 KAATADVLVVGSGIGGLSAAALLSRYGYRVSVLERHTIAGG 165
                 55667899****************************99999 PP

>> TIGR03315  Se_ygfK: putative selenate reductase, YgfK subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.1   1.8e-06   0.00022     532     576 ..     123     167 ..     115     170 .. 0.88

  Alignments for each domain:
  == domain 1    score: 16.6 bits;  conditional E-value: 1.8e-06
   TIGR03315 532 qlksekhkvaviGaGPaGlsagyflaraGlpvtvfekkekagGvv 576
                 +lk+    v v+G+G  Glsa+ +l+r G  v+v+e++  agG  
  MMETSP1137-20121227|7771_1 123 ALKAATADVLVVGSGIGGLSAAALLSRYGYRVSVLERHTIAGGAA 167
                 567777899******************************999975 PP

>> TIGR03996  mycofact_OYE_1: mycofactocin system FadH/OYE family oxidoreductase 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.4   2.8e-06   0.00032     366     417 ..     123     173 ..     114     177 .. 0.86

  Alignments for each domain:
  == domain 1    score: 17.1 bits;  conditional E-value: 2.8e-06
   TIGR03996 366 aeraatpgdvlvvGGGpaGleaarvlavrGhrvtlaeasarlGGmvriaarg 417
                 a +a +++dvlvvG G  Gl aa +l+  G+rv + e+ +  GG    + rg
  MMETSP1137-20121227|7771_1 123 ALKA-ATADVLVVGSGIGGLSAAALLSRYGYRVSVLERHTIAGGAAHSFERG 173
                 4444.4579************************************9999988 PP

>> TIGR00275  TIGR00275: flavoprotein, HI0933 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.9   0.2    0.0022      0.25       1      31 [.     131     161 ..     131     165 .. 0.92
   2 !    7.6   0.0    0.0028      0.33     105     156 ..     363     416 ..     351     422 .. 0.92

  Alignments for each domain:
  == domain 1    score: 7.9 bits;  conditional E-value: 0.0022
   TIGR00275   1 viiiGgGaaGlmaAitaaeegakVlllEknk 31 
                 v+++G G  Gl aA+ +++ g +V +lE+++
  MMETSP1137-20121227|7771_1 131 VLVVGSGIGGLSAAALLSRYGYRVSVLERHT 161
                 68**************************976 PP

  == domain 2    score: 7.6 bits;  conditional E-value: 0.0028
   TIGR00275 105 aksvldaLlkelkelgvevlteskvksi.kkeeekfevet.ekkeleakkvila 156
                 +  v+daL + +++ g +v++ ++v+s+  +e ++++v + +++el++++ +++
  MMETSP1137-20121227|7771_1 363 SGAVVDALVRGVTKHGGSVRVGCEVSSLlVEEGRCVGVCLkDGEELRCTTAVIS 416
                 668*************************************999*****999986 PP

>> TIGR01813  flavo_cyto_c: flavocytochrome c
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.3   4.1e-06   0.00049       1      39 [.     130     167 ..     130     176 .. 0.93
   2 ?   -1.6   0.0       1.5   1.8e+02     130     173 ..     364     406 ..     357     420 .. 0.82

  Alignments for each domain:
  == domain 1    score: 16.8 bits;  conditional E-value: 4.1e-06
   TIGR01813   1 dvvvvGsGlAGlsaaleakkaglaevvvleKapviGGNs 39 
                 dv+vvGsG+ Glsaa  + + g   v vle+  ++GG +
  MMETSP1137-20121227|7771_1 130 DVLVVGSGIGGLSAAALLSRYG-YRVSVLERHTIAGGAA 167
                 89*******************9.99************75 PP

  == domain 2    score: -1.6 bits;  conditional E-value: 1.5
   TIGR01813 130 aeivqklskkakkegvelrlnskvedlikddqgqvtGvkvkekg 173
                 + +v++l++ + k g ++r+  +v  l+  ++g+ +Gv  k+ +
  MMETSP1137-20121227|7771_1 364 GAVVDALVRGVTKHGGSVRVGCEVSSLLV-EEGRCVGVCLKDGE 406
                 46999*********************999.778999*9988754 PP

>> TIGR02485  CobZ_N-term: precorrin 3B synthase CobZ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.5   0.3    0.0014      0.16       2      44 ..     129     168 ..     128     172 .. 0.83
   2 !    7.4   0.0    0.0029      0.34     122     183 ..     358     416 ..     350     445 .. 0.80

  Alignments for each domain:
  == domain 1    score: 8.5 bits;  conditional E-value: 0.0014
   TIGR02485   2 vdvlviGgGlaglCaaiearraGasvllleaaPrdlrGGnarh 44 
                  dvlv+G+G+ gl aa    r G  v +le    +   G a+h
  MMETSP1137-20121227|7771_1 129 ADVLVVGSGIGGLSAAALLSRYGYRVSVLER---HTIAGGAAH 168
                 59***************************94...444444555 PP

  == domain 2    score: 7.4 bits;  conditional E-value: 0.0029
   TIGR02485 122 fllGGGkalvnalyasaerlGveiryeaeveriereedgratiaarlaaaderiatkavvla 183
                 +++GG  a+v+al +   + G  +r + ev +++   ++++ +++ l  ++e +++ + v++
  MMETSP1137-20121227|7771_1 358 YPVGGSGAVVDALVRGVTKHGGSVRVGCEVSSLLV--EEGRCVGVCL-KDGEELRCTTAVIS 416
                 789*******************************9..4456666666.44555555555544 PP

>> TIGR00551  nadB: L-aspartate oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   0.1   3.6e-05    0.0042       3      41 ..     129     168 ..     127     177 .. 0.81
   2 ?    1.5   0.0      0.18        21     145     175 ..     380     410 ..     362     424 .. 0.68

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 3.6e-05
   TIGR00551   3 advvviGsGaagLsaalalaekyr.vvvlskaevkesasv 41 
                 adv+v+GsG+ gLsaa+ l++ +  v+vl ++ +  +a++
  MMETSP1137-20121227|7771_1 129 ADVLVVGSGIGGLSAAALLSRYGYrVSVLERHTIAGGAAH 168
                 79**************999987544****99988877765 PP

  == domain 2    score: 1.5 bits;  conditional E-value: 0.18
   TIGR00551 145 eilerevaldllietgrvvGvlvvesetvev 175
                 +++ +  + +ll+e+gr+vGv +++ e++  
  MMETSP1137-20121227|7771_1 380 SVRVGCEVSSLLVEEGRCVGVCLKDGEELRC 410
                 4555666899*************99765543 PP

>> TIGR03197  MnmC_Cterm: tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.6   1.4e-05    0.0016       1      39 [.     130     167 ..     130     173 .. 0.91

  Alignments for each domain:
  == domain 1    score: 15.4 bits;  conditional E-value: 1.4e-05
   TIGR03197   1 kvavIGaGiAgaalalsLarrGvqvtllekdeklaqgAS 39 
                 +v+v+G Gi g+++a  L+r G +v++le++ ++a gA 
  MMETSP1137-20121227|7771_1 130 DVLVVGSGIGGLSAAALLSRYGYRVSVLERH-TIAGGAA 167
                 599****************************.7887775 PP

>> TIGR01318  gltD_gamma_fam: glutamate synthase, small subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.1   2.8e-05    0.0032     138     178 ..     125     165 ..     114     171 .. 0.87

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 2.8e-05
   TIGR01318 138 kktgkrvaviGaGpaGlacadvlaraGvkvvvfdrypeiGG 178
                 k  +  v v+G+G  Gl+ a +l+r G +v v +r+   GG
  MMETSP1137-20121227|7771_1 125 KAATADVLVVGSGIGGLSAAALLSRYGYRVSVLERHTIAGG 165
                 55667899****************************99998 PP

>> TIGR02731  phytoene_desat: phytoene desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.5   0.0   0.00032     0.038       2      52 ..     131     180 ..     130     222 .. 0.78
   2 ?    2.1   0.0      0.12        14     191     281 ..     345     427 ..     304     484 .. 0.66

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 0.00032
   TIGR02731   2 vaiagaglaglsaakyladaghtpivleardvlggkvaawkdedgdwyetg 52 
                 v + g+g+ glsaa  l+  g++  vle++ + gg   +++   g  +++g
  MMETSP1137-20121227|7771_1 131 VLVVGSGIGGLSAAALLSRYGYRVSVLERHTIAGGAAHSFE-RGGYIFDSG 180
                 7899******************************9765553.344445555 PP

  == domain 2    score: 2.1 bits;  conditional E-value: 0.12
   TIGR02731 191 alnrflqerygsklafldgapperlcqpivdyitsrggevrlnarlkeivlnedgsvkafaladle.gkesfevtadayvsalavdilklll 281
                  l  f     g+k+ +  g     + + +v  +t++gg vr+ +++  + ++e  +v    l+d+e  + +      a +s   v +   ll
  MMETSP1137-20121227|7771_1 345 MLADFYA--DGAKMDYPVGGS-GAVVDALVRGVTKHGGSVRVGCEVSSLLVEEGRCVG-VCLKDGEeLRCTT-----AVISNADVWATAALL 427
                 4444443..478888876654.45788999*****************99988887775.5566655023333.....344444444444555 PP

>> TIGR00031  UDP-GALP_mutase: UDP-galactopyranose mutase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.0     4e-05    0.0047       3      41 ..     130     168 ..     128     181 .. 0.92

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 4e-05
   TIGR00031   3 dyiivGaGlsGivlaeilaklnkrvlvvekrnhiGGncy 41 
                 d+++vG+G+ G   a  l++++ rv v+e+    GG ++
  MMETSP1137-20121227|7771_1 130 DVLVVGSGIGGLSAAALLSRYGYRVSVLERHTIAGGAAH 168
                 899***************************999999875 PP

>> TIGR02023  BchP-ChlP: geranylgeranyl reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.3   5.4e-05    0.0063       2      32 ..     130     160 ..     129     167 .. 0.92

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 5.4e-05
   TIGR02023   2 dvlviGggpsGaaaaetLakagievillere 32 
                 dvlv+G+g +G +aa  L + g++v +ler+
  MMETSP1137-20121227|7771_1 130 DVLVVGSGIGGLSAAALLSRYGYRVSVLERH 160
                 8****************************98 PP

>> TIGR01350  lipoamide_DH: dihydrolipoyl dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.8   0.4   6.7e-05    0.0078       2      37 ..     129     164 ..     124     168 .. 0.87

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 6.7e-05
   TIGR01350   2 ydvvviGgGpgGYvaAiraaqlglkvalvekeklGG 37 
                  dv+v+G+G+gG  aA   ++ g +v ++e++++ G
  MMETSP1137-20121227|7771_1 129 ADVLVVGSGIGGLSAAALLSRYGYRVSVLERHTIAG 164
                 699***************************966543 PP

>> TIGR01316  gltA: glutamate synthase (NADPH), homotetrameric
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.2   0.2    0.0001     0.012     130     170 ..     125     165 ..     114     169 .. 0.86

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 0.0001
   TIGR01316 130 pstkkkvaviGaGpaGlavaselakkGhevtvfealhkpGG 170
                 +++   v v+G+G  Gl+ a+ l++ G++v v e     GG
  MMETSP1137-20121227|7771_1 125 KAATADVLVVGSGIGGLSAAALLSRYGYRVSVLERHTIAGG 165
                 45667899*************************98887777 PP

>> TIGR03911  pyrrolys_PylD: pyrrolysine biosynthesis protein PylD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.2    0.0002     0.023     136     177 ..     121     160 ..     113     166 .. 0.85

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 0.0002
   TIGR03911 136 ldllkaglkekdvlviGlGkvGtaaavalvkkGakvyvydke 177
                 +  lka     dvlv+G G  G +aa+ l+ +G +v v++ +
  MMETSP1137-20121227|7771_1 121 STALKAA--TADVLVVGSGIGGLSAAALLSRYGYRVSVLERH 160
                 5667777..889************************999765 PP

>> TIGR02732  zeta_caro_desat: carotene 7,8-desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.2   0.00032     0.037       2      42 ..     131     171 ..     130     187 .. 0.92

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 0.00032
   TIGR02732   2 vaivgaglaglatavelvdaghevelyesrsflggkvgswv 42 
                 v +vg+g+ gl++a  l   g++v + e  ++ gg   s++
  MMETSP1137-20121227|7771_1 131 VLVVGSGIGGLSAAALLSRYGYRVSVLERHTIAGGAAHSFE 171
                 679*********************************99997 PP

>> TIGR01790  carotene-cycl: lycopene cyclase family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.1   0.00035     0.041       1      37 [.     130     165 ..     130     172 .. 0.84

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 0.00035
   TIGR01790   1 DliviGgGlAglaiAlelakpglrvqlieaapklpfn 37 
                 D++v+G+G  gl  A+ l++ g rv ++e +  +++ 
  MMETSP1137-20121227|7771_1 130 DVLVVGSGIGGLSAAALLSRYGYRVSVLERHT-IAGG 165
                 9****************************554.4443 PP

>> TIGR01424  gluta_reduc_2: glutathione-disulfide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.5   0.00037     0.043       4      38 ..     130     164 ..     128     169 .. 0.90

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 0.00037
   TIGR01424   4 dlfviGaGsGGvraarlaaalGakvaiaeedlvGG 38 
                 d++v+G+G GG+ aa l + +G +v++ e++ + G
  MMETSP1137-20121227|7771_1 130 DVLVVGSGIGGLSAAALLSRYGYRVSVLERHTIAG 164
                 899**************************988755 PP

>> TIGR01292  TRX_reduct: thioredoxin-disulfide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.2   0.00022     0.026       2      37 ..     130     165 ..     129     171 .. 0.89
   2 ?   -3.4   0.1       6.1   7.1e+02     261     296 ..     595     629 ..     591     631 .. 0.72

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 0.00022
   TIGR01292   2 dviiiGaGpaGltaaiYaaranlktlliegkeaggq 37 
                 dv+++G+G +Gl+aa   +r+++++ ++e+++ +g 
  MMETSP1137-20121227|7771_1 130 DVLVVGSGIGGLSAAALLSRYGYRVSVLERHTIAGG 165
                 99*************************999887765 PP

  == domain 2    score: -3.4 bits;  conditional E-value: 6.1
   TIGR01292 261 mrTsveGvfaaGDvrdkslrQvvtaagdGaiAalsv 296
                  + +++G+  +GD +   +  v   ag+G++Aa+++
  MMETSP1137-20121227|7771_1 595 AKSKLPGLLCCGDSTWPGI-GVPAVAGSGIAAAHAI 629
                 5678899999999887544.4555678899998876 PP

>> TIGR00136  gidA: tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   0.2     0.003      0.36       2      30 ..     130     158 ..     129     166 .. 0.91
   2 ?    1.7   0.0      0.11        13     118     149 ..     386     416 ..     381     425 .. 0.87

  Alignments for each domain:
  == domain 1    score: 6.9 bits;  conditional E-value: 0.003
   TIGR00136   2 dviviGaGhaGieaalaaarlgaktlllt 30 
                 dv+v+G+G  G+ aa+  +r g ++ +l 
  MMETSP1137-20121227|7771_1 130 DVLVVGSGIGGLSAAALLSRYGYRVSVLE 158
                 89***********************9985 PP

  == domain 2    score: 1.7 bits;  conditional E-value: 0.11
   TIGR00136 118 evedliledndevkGvvtkdgaklrakavilt 149
                 ev +l++e + ++ Gv +kdg++lr+ + ++ 
  MMETSP1137-20121227|7771_1 386 EVSSLLVE-EGRCVGVCLKDGEELRCTTAVIS 416
                 67899999.66**************9988875 PP

>> TIGR03140  AhpF: alkyl hydroperoxide reductase, F subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   0.1   0.00074     0.087     203     242 ..     119     158 ..     109     170 .. 0.82
   2 ?   -2.9   0.0       3.3   3.9e+02     295     323 ..     393     421 ..     375     424 .. 0.80

  Alignments for each domain:
  == domain 1    score: 9.1 bits;  conditional E-value: 0.00074
   TIGR03140 203 aeeaeeekekydvlvvGgGPagaaaaiyaarkGlkvalva 242
                 +++++ + ++ dvlvvG+G  g +aa   +r G +v+++ 
  MMETSP1137-20121227|7771_1 119 DQSTALKAATADVLVVGSGIGGLSAAALLSRYGYRVSVLE 158
                 45556667889*************************9975 PP

  == domain 2    score: -2.9 bits;  conditional E-value: 3.3
   TIGR03140 295 teeeakevelesGevlkaksvivatGakW 323
                 +e+    v l++Ge l+ ++ +++    W
  MMETSP1137-20121227|7771_1 393 EEGRCVGVCLKDGEELRCTTAVISNADVW 421
                 566678899*********99999988877 PP

>> TIGR01421  gluta_reduc_1: glutathione-disulfide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   0.8   0.00093      0.11       3      39 ..     129     165 ..     127     169 .. 0.92

  Alignments for each domain:
  == domain 1    score: 9.5 bits;  conditional E-value: 0.00093
   TIGR01421   3 ydylviGGGsGGiasarraaeyGakallveekklGGt 39 
                  d+lv+G G GG+++a   ++yG ++ ++e + + G 
  MMETSP1137-20121227|7771_1 129 ADVLVVGSGIGGLSAAALLSRYGYRVSVLERHTIAGG 165
                 699******************************9875 PP

>> TIGR03143  AhpF_homolog: putative alkyl hydroperoxide reductase F subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   0.3    0.0012      0.14       6      43 ..     130     167 ..     126     176 .. 0.83

  Alignments for each domain:
  == domain 1    score: 8.5 bits;  conditional E-value: 0.0012
   TIGR03143   6 dlvviGgGpaglsaGiyagraklkvliiekdelGGqit 43 
                 d++v+G+G  glsa   ++r  ++v ++e++ + G   
  MMETSP1137-20121227|7771_1 130 DVLVVGSGIGGLSAAALLSRYGYRVSVLERHTIAGGAA 167
                 89999999999999999999999999999999877655 PP

>> TIGR03377  glycerol3P_GlpA: glycerol-3-phosphate dehydrogenase, anaerobic, A subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.4     0.065       7.6       1      38 [.     130     167 ..     130     175 .. 0.94
   2 ?    4.6   0.1     0.017         2     149     204 ..     371     422 ..     363     426 .. 0.76

  Alignments for each domain:
  == domain 1    score: 2.7 bits;  conditional E-value: 0.065
   TIGR03377   1 dvvviGGGatGaGilRDlalRglkvvLlekkdlasGtt 38 
                 dv+v+G G  G   +  l+  g++v +le++ +a G++
  MMETSP1137-20121227|7771_1 130 DVLVVGSGIGGLSAAALLSRYGYRVSVLERHTIAGGAA 167
                 799*********************************97 PP

  == domain 2    score: 4.6 bits;  conditional E-value: 0.017
   TIGR03377 149 vldakehGariltytkvvgliregdrvtgvkvedlktgeeeeieaevvvnaaGaWa 204
                 v   ++hG+ ++  ++v +l++e++r +gv ++d    ee + ++  v+  a +Wa
  MMETSP1137-20121227|7771_1 371 VRGVTKHGGSVRVGCEVSSLLVEEGRCVGVCLKDG---EELRCTT-AVISNADVWA 422
                 556789************************99764...4444443.4666667777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (652 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       200  (0.0487567); expected 82.0 (0.02)
Passed bias filter:                      187  (0.0455875); expected 82.0 (0.02)
Passed Vit filter:                        76  (0.0185275); expected 4.1 (0.001)
Passed Fwd filter:                        35  (0.00853242); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              35  [number of targets reported over threshold]
# CPU time: 0.79u 0.18s 00:00:00.97 Elapsed: 00:00:00.68
# Mc/sec: 1265.54
//
Query:       MMETSP1137-20121227|7772_1  [L=592]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (592 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       118  (0.0287665); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.16s 00:00:00.54 Elapsed: 00:00:00.42
# Mc/sec: 1860.42
//
Query:       MMETSP1137-20121227|7773_1  [L=487]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   1.3e-124  414.1  30.3   1.5e-124  413.9  21.0    1.0  1  TIGR00836 amt: ammonium transporter
    4.7e-94  313.3  28.0      4e-91  303.6  15.7    2.0  2  TIGR03644 marine_trans_1: probable ammonium transporter, marine subtype
  ------ inclusion threshold ------
       0.11   10.3   1.7        5.3    4.8   0.1    2.3  2  TIGR00681 kdpC: K+-transporting ATPase, C subunit


Domain annotation for each model (and alignments):
>> TIGR00836  amt: ammonium transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  413.9  21.0  1.1e-127  1.5e-124       1     406 []      28     466 ..      28     466 .. 0.92

  Alignments for each domain:
  == domain 1    score: 413.9 bits;  conditional E-value: 1.1e-127
   TIGR00836   1 dtawllvaaalVflmqpGlalLeaGlvrsknvlnillknlldlavvillyvllGyslafgeeaetvngfiGtskfglkn...kvlk.......esskeelpelvfflfqlvFaaiaaaivsgavaeRikfsayllfsvllltlvyppvahwvwgtgGwlal.........klgvlDFAGstvVHlvgGvagLvaalvlGpRigrf....eseaikphnvplvvlGtflLwfGWfgFNaGSal..aang.....laalaavnTtlaaaagaltallie.ylkegkptvlgaingilaglvaitagagvvepwaalviGvvagvlvllavsklkkklkiDDpldvfavHgvaGiwGlilvglfaaekvvasagtagss.......llggnakqllvqligilvilvysfvvtliillilkkvigLRvseeeEklGlDlaehgesay 406
                 d ++llv  alVf+mq+G+a+LeaG+vr+kn+ nillknlld++++ ++++ +G+++a+ +   + ngfiGt++ g ++   +          e+++ +  + +++ fq+ Faa+aa+ivsgavaeR+++sayl++ v++++ +yp+v hwvw+tgGwl++           g +DFAGs+vVH++gGva++++a ++GpR+gr+    ++  +++h+  l+vlGtf+Lw+GW+gFN+GS+l  +        ++a+++++Ttlaa ag++t++l++  l+++ ++v +++ng+l+glv+itag+++++pw a v+G+++g++ + a  ++++ l+iDDpld+favHg +G+wG+++vglf+++ +  + ++ +         l+ g++k l++ +   +v +++++ + +i+++ +k+++ LRv +e E +G+D+++hg  ay
  MMETSP1137-20121227|7773_1  28 DSFYLLVVGALVFFMQAGFAMLEAGSVRAKNTKNILLKNLLDACLGAFIWWGWGFGVAYNSG-PNPNGFIGTANTGEDKggyS--FfsawwtgEDEHPTGYNFALWWFQYGFAAAAATIVSGAVAERAQLSAYLIYTVVITGWIYPVVVHWVWATGGWLSTftqveddvvLGGCIDFAGSGVVHMTGGVAAFWGAAIIGPRKGRYdeskKPIPMPGHSTVLSVLGTFILWLGWYGFNPGSTLalT--PsgyaqTMARVILTTTLAAGAGGVTTVLLDkLLSSKTWDVAMVCNGVLGGLVSITAGCSTITPWYAYVVGIIGGLVYFGASRLMANVLRIDDPLDAFAVHGACGFWGVLAVGLFGDPVYTRTYYAWTDDagdeytgLFFGGGKVLGAAITTLVVEIAWVSFFSIIMFVSMKFAGILRVPAEVEDAGMDISKHGGAAY 466
                 789*********************************************************87.669******97776664432..13456667899999*************************************************************9999999988889*********************************9999999*****************************652..4445669**********99999998888861567779************************************99999999999999******************************9886555443336788999999999****************************************************999 PP

>> TIGR03644  marine_trans_1: probable ammonium transporter, marine subtype
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  303.6  15.7   2.9e-94     4e-91       3     343 ..      27     383 ..      25     394 .. 0.90
   2 !   12.9   0.1   5.6e-06    0.0076     349     403 ..     414     468 ..     405     469 .. 0.89

  Alignments for each domain:
  == domain 1    score: 303.6 bits;  conditional E-value: 2.9e-94
   TIGR03644   3 ldtflflvsgalvmwmaaGfamleaGlvrskntteiltknvalfaiaaimyllvgynlmypgdalllegil....eafllaalesvadleagseedaayssasdfffqvvfvatamsivsGavaerlklwaflvfavvltaliyPvegswkwgg.Gll.......sel...gfsdfaGsgivhlaGaaaalagvlllGarkGkygkdgevkaipgsnlplatlGtfilwlGwfGfnGgsqlalsdvedanavakifvntnaaaaaGaiaalllakllfgka.dltmvlnGalaGlvaitaePlaPsllaatliGavgGvlvvlsi.vlldklkiddpvGaisvhgvaGifGllvvplt 343
                 +d+f++lv galv++m aGfamleaG vr+knt +il kn+   ++ a +++  g+ ++y+++    +g++    + + +++ + +++  +g++e+ +  + + ++fq  f+a+a++ivsGavaer +l a+l+++vv+t+ iyPv  +w w++ G+l       +++   g  dfaGsg+vh++G++aa+ g+ ++G+rkG+y+++++  ++pg +  l+ lGtfilwlGw+Gfn gs lal+  + a+++a++++ t +aa aG ++++ll kll  k+ d+ mv nG l+Glv+ita  ++ +++ a ++G++gG++   +  ++ + l+iddp+ a +vhg +G++G+l+v l 
  MMETSP1137-20121227|7773_1  27 VDSFYLLVVGALVFFMQAGFAMLEAGSVRAKNTKNILLKNLLDACLGAFIWWGWGFGVAYNSGP-NPNGFIgtanTGEDKGGYSFFSAWWTGEDEHPTGYNFALWWFQYGFAAAAATIVSGAVAERAQLSAYLIYTVVITGWIYPVVVHWVWATgGWLstftqveDDVvlgGCIDFAGSGVVHMTGGVAAFWGAAIIGPRKGRYDESKKPIPMPGHSTVLSVLGTFILWLGWYGFNPGSTLALTPSGYAQTMARVILTTTLAAGAGGVTTVLLDKLLSSKTwDVAMVCNGVLGGLVSITAGCSTITPWYAYVVGIIGGLVYFGASrLMANVLRIDDPLDAFAVHGACGFWGVLAVGLF 383
                 79**********************************************************7776.677777332233445566677778888888888888999************************************************8548995554443222444689*******************************************************************************************************98766************************************98765540455679**********************9875 PP

  == domain 2    score: 12.9 bits;  conditional E-value: 5.6e-06
   TIGR03644 349 fvaqligvvaifvfvfvaslivwailkavlGirvseeeeleGldlaelGleaype 403
                 + a + ++v+ +++v + s+i+++ +k+   +rv  e e  G+d+++ G  ay +
  MMETSP1137-20121227|7773_1 414 LGAAITTLVVEIAWVSFFSIIMFVSMKFAGILRVPAEVEDAGMDISKHGGAAYND 468
                 5566777888899***************9999********************976 PP

>> TIGR00681  kdpC: K+-transporting ATPase, C subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   0.1    0.0039       5.3       5      45 ..      12      52 ..       9      59 .. 0.88
   2 ?    4.5   0.1    0.0049       6.7      10      27 ..     158     175 ..     151     195 .. 0.78

  Alignments for each domain:
  == domain 1    score: 4.8 bits;  conditional E-value: 0.0039
   TIGR00681  5 palsslllllvitglvyPllvtvvGqlvfpyqanGslieed 45
                pal++ + l  +++ v     +vvG lvf +qa  +++e +
  MMETSP1137-20121227|7773_1 12 PALATAADLAYVAASVDSFYLLVVGALVFFMQAGFAMLEAG 52
                789999999999*********************99988754 PP

  == domain 2    score: 4.5 bits;  conditional E-value: 0.0049
   TIGR00681  10 lllllvitglvyPllvtv 27 
                 l+  +vitg +yP++v  
  MMETSP1137-20121227|7773_1 158 LIYTVVITGWIYPVVVHW 175
                 4555789*******9965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (487 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       159  (0.0387616); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.36u 0.16s 00:00:00.52 Elapsed: 00:00:00.52
# Mc/sec: 1236.13
//
Query:       MMETSP1137-20121227|7775_1  [L=197]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (197 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                      1047  (0.255241); expected 82.0 (0.02)
Passed bias filter:                      212  (0.0516821); expected 82.0 (0.02)
Passed Vit filter:                        69  (0.0168211); expected 4.1 (0.001)
Passed Fwd filter:                        33  (0.00804486); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.79u 0.22s 00:00:01.01 Elapsed: 00:00:00.59
# Mc/sec: 440.71
//
Query:       MMETSP1137-20121227|7776_1  [L=208]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (208 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       249  (0.0607021); expected 82.0 (0.02)
Passed bias filter:                      161  (0.0392491); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.14s 00:00:00.35 Elapsed: 00:00:00.40
# Mc/sec: 686.34
//
Query:       MMETSP1137-20121227|7777_1  [L=188]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (188 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        51  (0.012433); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.11s 00:00:00.30 Elapsed: 00:00:00.28
# Mc/sec: 855.65
//
Query:       MMETSP1137-20121227|7778_1  [L=390]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (390 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        81  (0.0197465); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.18s 00:00:00.47 Elapsed: 00:00:00.73
# Mc/sec: 705.15
//
Query:       MMETSP1137-20121227|7779_1  [L=158]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0073   12.3   0.0     0.0075   12.3   0.0    1.1  1  TIGR01631 Trypano_RHS: trypanosome RHS family


Domain annotation for each model (and alignments):
>> TIGR01631  Trypano_RHS: trypanosome RHS family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.3   0.0   1.8e-06    0.0075     381     432 ..      32      83 ..      10     111 .. 0.86

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 1.8e-06
   TIGR01631 381 aawgvillssPdeknfkeWskqrraakivinCdelkdlkAlvawrklslaee 432
                 +  +v+l+ssPd+   k+W+k++ a+++ +  +  +dl+ l  ++ ++l+++
  MMETSP1137-20121227|7779_1  32 KRLPVLLISSPDPGISKDWVKRNDATELWMPMPRGEDLEVLKESVXPKLTKA 83 
                 567899***************************9999999888877776655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (158 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        65  (0.0158459); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.19u 0.16s 00:00:00.35 Elapsed: 00:00:00.32
# Mc/sec: 651.70
//
Query:       MMETSP1137-20121227|7780_1  [L=139]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (139 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        51  (0.012433); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.14s 00:00:00.30 Elapsed: 00:00:00.28
# Mc/sec: 655.23
//
Query:       MMETSP1137-20121227|7781_1  [L=521]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (521 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       157  (0.038274); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.14s 00:00:00.48 Elapsed: 00:00:00.40
# Mc/sec: 1719.16
//
Query:       MMETSP1137-20121227|7782_1  [L=109]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (109 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        92  (0.0224281); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.18s 00:00:00.34 Elapsed: 00:00:00.30
# Mc/sec: 479.56
//
Query:       MMETSP1137-20121227|7783_1  [L=371]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (371 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       114  (0.0277913); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.15s 00:00:00.43 Elapsed: 00:00:00.37
# Mc/sec: 1323.46
//
Query:       MMETSP1137-20121227|7784_1  [L=590]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (590 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       198  (0.0482691); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.14s 00:00:00.54 Elapsed: 00:00:00.51
# Mc/sec: 1526.93
//
Query:       MMETSP1137-20121227|7785_1  [L=185]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (185 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        62  (0.0151146); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.15s 00:00:00.32 Elapsed: 00:00:00.39
# Mc/sec: 626.10
//
Query:       MMETSP1137-20121227|7786_1  [L=408]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.8e-14   51.8   0.0    2.1e-09   35.2   0.0    2.1  2  TIGR01289 LPOR: light-dependent protochlorophyllide reductase
    3.9e-07   27.4   0.0    8.8e-06   23.0   0.0    2.1  2  TIGR01963 PHB_DH: 3-hydroxybutyrate dehydrogenase
    8.6e-07   26.4   0.0    8.4e-05   19.9   0.0    2.3  2  TIGR02415 23BDH: acetoin reductases
    9.1e-06   22.1   0.1    1.3e-05   21.6   0.1    1.1  1  TIGR02632 RhaD_aldol-ADH: rhamnulose-1-phosphate aldolase/alcohol dehydrogenase
    1.2e-05   22.9   0.0    4.5e-05   21.1   0.0    1.8  2  TIGR01830 3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase
    0.00017   18.9   0.1     0.0039   14.4   0.1    2.2  2  TIGR01831 fabG_rel: putative 3-oxoacyl-(acyl-carrier-protein) reductase
    0.00054   17.4   0.0    0.00091   16.6   0.0    1.3  1  TIGR01832 kduD: 2-deoxy-D-gluconate 3-dehydrogenase
     0.0087   12.8   0.1      0.014   12.0   0.0    1.2  1  TIGR02823 oxido_YhdH: putative quinone oxidoreductase, YhdH/YhfP family
  ------ inclusion threshold ------
      0.014   12.7   0.0      0.023   11.9   0.0    1.3  1  TIGR01500 sepiapter_red: sepiapterin reductase
      0.019   12.2   0.5      0.091   10.0   0.2    1.9  2  TIGR03971 SDR_subfam_1: oxidoreductase, SDR family
      0.019   12.4   0.1      0.068   10.6   0.0    1.8  2  TIGR01829 AcAcCoA_reduct: acetoacetyl-CoA reductase
      0.025   11.4   0.2      0.048   10.5   0.1    1.5  1  TIGR02824 quinone_pig3: putative NAD(P)H quinone oxidoreductase, PIG3 family


Domain annotation for each model (and alignments):
>> TIGR01289  LPOR: light-dependent protochlorophyllide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.2   0.0   6.1e-12   2.1e-09       6     143 ..      95     235 ..      91     247 .. 0.81
   2 !   14.5   0.0   1.2e-05     0.004     182     232 ..     254     305 ..     247     309 .. 0.81

  Alignments for each domain:
  == domain 1    score: 35.2 bits;  conditional E-value: 6.1e-12
   TIGR01289   6 viitgassglglaaakalvekgkwhvvmacrdlekaekaaksl....glpkdsytilkldlasl.dsvr...kfveqfresgrsldalvcnaavylpllkeplfsadgyelsvatnhlghfllsnllledlkksdekdkrliilgs 143
                 + +tga+sg+g +aa  l+++g + vv+  r   k +ka + +    g+ +++ + + +d +s+ ++ r    +++   + g +l  l+ na v+ p+  e + ++dg e      hl h ll+  ll +l + + ++ r++ + s
  MMETSP1137-20121227|7786_1  95 IAVTGAASGIGREAAAFLAQRG-FPVVLCSRSHAKVQKAVQYIaglpGVQSEKLASVTFDQCSVfQTARgaxDIMTAADKMGAPLRGLLLNAGVW-PT--ERRITTDGMEEGFQVCHLSHQLLTMRLLPQLCA-PGEEARVVTVAS 235
                 679*******************.**************9988654333566788888999987652566622245667778899***********8.54..889**************************9975.556667766654 PP

  == domain 2    score: 14.5 bits;  conditional E-value: 1.2e-05
   TIGR01289 182 kefkaakaykdsklcnmltvrelhrryhdetg..ivfaslypgcvadtglfre 232
                 ++++a+ ay +skl+n+l ++el +r   ++   ++  +++pg va t+lfre
  MMETSP1137-20121227|7786_1 254 RRWDATAAYGESKLANVLFAQELAQRLPLTADqrLTSLCVHPGVVA-TSLFRE 305
                 67899*********************876655015555668**998.78**98 PP

>> TIGR01963  PHB_DH: 3-hydroxybutyrate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.0   0.0   2.6e-08   8.8e-06       4      52 ..      95     143 ..      92     241 .. 0.77
   2 ?    2.6   0.0     0.042        14     149     190 ..     261     305 ..     250     353 .. 0.81

  Alignments for each domain:
  == domain 1    score: 23.0 bits;  conditional E-value: 2.6e-08
   TIGR01963   4 alvtGaasGiglaiakelaaaGakvvvndleeeaaeaaakeleeaggev 52 
                 + vtGaasGig++ a  la+ G+ vv+ + ++++ ++a + ++   g  
  MMETSP1137-20121227|7786_1  95 IAVTGAASGIGREAAAFLAQRGFPVVLCSRSHAKVQKAVQYIAGLPGVQ 143
                 68*****************************999999888776543333 PP

  == domain 2    score: 2.6 bits;  conditional E-value: 0.042
   TIGR01963 149 aYvaaKHglvGltKvlAlE...vAetgitanaicPgyvrtpLvek 190
                 aY  +K + v +++ lA     +A++ +t+ ++ Pg v t L ++
  MMETSP1137-20121227|7786_1 261 AYGESKLANVLFAQELAQRlplTADQRLTSLCVHPGVVATSLFRE 305
                 5666666666666666654333799***************99765 PP

>> TIGR02415  23BDH: acetoin reductases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.0   2.5e-07   8.4e-05       5     106 ..      97     204 ..      94     236 .. 0.76
   2 ?    4.1   0.0     0.017       5.7     146     192 ..     258     307 ..     250     337 .. 0.86

  Alignments for each domain:
  == domain 1    score: 19.9 bits;  conditional E-value: 2.5e-07
   TIGR02415   5 vtGaaqGiGkaiaerLakdGfavavadlneetaketakelkek.gtka......vavkldvsdkseveeaveqaveklGe.ldvlvnnaGvalvtpileiteeeleklyn 106
                 vtGaa GiG++ a  La+ Gf v+++   +++++++++ +    g ++       + +  v + +     + +a++k+G  l  l+ naGv +++    it + +e+ ++
  MMETSP1137-20121227|7786_1  97 VTGAASGIGREAAAFLAQRGFPVVLCSRSHAKVQKAVQYIAGLpGVQSeklasvTFDQCSVFQTARGAXDIMTAADKMGApLRGLLLNAGVWPTER--RITTDGMEEGFQ 204
                 9****************************9999999998864213222000010333445666666667788889999865889999999988774..555555555555 PP

  == domain 2    score: 4.1 bits;  conditional E-value: 0.017
   TIGR02415 146 elsaysstkfavrgltqtaakeL...akkgitvnayaPGivktemreeid 192
                   +ay  +k a   ++q  a+ L   a++  t  +  PG+v t++ +e  
  MMETSP1137-20121227|7786_1 258 ATAAYGESKLANVLFAQELAQRLpltADQRLTSLCVHPGVVATSLFREFG 307
                 6789*****************9877789999************9988765 PP

>> TIGR02632  RhaD_aldol-ADH: rhamnulose-1-phosphate aldolase/alcohol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.6   0.1   3.9e-08   1.3e-05     405     464 ..      82     142 ..      78     172 .. 0.84

  Alignments for each domain:
  == domain 1    score: 21.6 bits;  conditional E-value: 3.9e-08
   TIGR02632 405 rmPkekelarr.valvtGgasGiGrevarrlvdeGahvvladldaeaaeavaaelvdkfGa 464
                 +mP    la+   ++vtG+asGiGre a  l+++G  vvl    ++++++  + + +  G 
  MMETSP1137-20121227|7786_1  82 LMPSSYALAEGcCIAVTGAASGIGREAAAFLAQRGFPVVLCSRSHAKVQKAVQYIAGLPGV 142
                 689999998752689**********************************999998876665 PP

>> TIGR01830  3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1   0.0   1.3e-07   4.5e-05       3      52 ..      97     145 ..      95     197 .. 0.71
   2 ?   -1.2   0.0      0.86   2.9e+02     147     186 ..     261     303 ..     258     309 .. 0.77

  Alignments for each domain:
  == domain 1    score: 21.1 bits;  conditional E-value: 1.3e-07
   TIGR01830   3 vtGasrgiGkaiakklakegakvviterskeekaeelaeelkeagvkaaa 52 
                 vtGa+ giG++ a  la++g+ vv+++r +++k++++++ ++   +  + 
  MMETSP1137-20121227|7786_1  97 VTGAASGIGREAAAFLAQRGFPVVLCSR-SHAKVQKAVQYIAGLPGVQSE 145
                 9*************************76.567789998888875433332 PP

  == domain 2    score: -1.2 bits;  conditional E-value: 0.86
   TIGR01830 147 nYaasKaGligltkslakEl...asrnitvnavaPGfietdmt 186
                  Y  sK   + +++ la+ l   a + +t  +v PG ++t + 
  MMETSP1137-20121227|7786_1 261 AYGESKLANVLFAQELAQRLpltADQRLTSLCVHPGVVATSLF 303
                 6777787778888888887544478899999*******99875 PP

>> TIGR01831  fabG_rel: putative 3-oxoacyl-(acyl-carrier-protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.1   1.1e-05    0.0039       2      50 ..      96     144 ..      95     195 .. 0.65
   2 ?    2.1   0.0     0.064        22     168     189 ..     284     305 ..     260     316 .. 0.81

  Alignments for each domain:
  == domain 1    score: 14.4 bits;  conditional E-value: 1.1e-05
   TIGR01831   2 lvtgasrgigraialklaadgfeiavhyrsdradaeesvaairaq.ggna 50 
                  vtga+ gigr  a+ la  gf + +   +++a+ +++v+ i    g+++
  MMETSP1137-20121227|7786_1  96 AVTGAASGIGREAAAFLAQRGFPVVLC-SRSHAKVQKAVQYIAGLpGVQS 144
                 69*********************9875.5556677777777765413333 PP

  == domain 2    score: 2.1 bits;  conditional E-value: 0.064
   TIGR01831 168 akrkitvnciapglidtemvae 189
                 a++++t  c+ pg++ t +  e
  MMETSP1137-20121227|7786_1 284 ADQRLTSLCVHPGVVATSLFRE 305
                 7889*************98776 PP

>> TIGR01832  kduD: 2-deoxy-D-gluconate 3-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0   2.7e-06   0.00091       4     140 ..      91     235 ..      88     246 .. 0.74

  Alignments for each domain:
  == domain 1    score: 16.6 bits;  conditional E-value: 2.7e-06
   TIGR01832   4 eGkvalvtGantGlGqgiavglaeaGadivgvgise..lsetqekveal....Grkflslkad...ladeeaakalvdeaveeag.kidilvnnaGiirredavefsekdwddvlnvnlkavfllsqavakkllkqGrkgkiinias 140
                 eG  + vtGa +G+G+  a  la+ G  +v  ++s+  ++++ + ++ l     +k+ s++ d   +++++  +  + +a++++g  +  l+ naG+   e  +  +    ++ ++v   +  ll+  +  +l + G++++++ +as
  MMETSP1137-20121227|7786_1  91 EGCCIAVTGAASGIGREAAAFLAQRGFPVVLCSRSHakVQKAVQYIAGLpgvqSEKLASVTFDqcsVFQTARGAXDIMTAADKMGaPLRGLLLNAGVWPTERRI--TTDGMEEGFQVCHLSHQLLTMRLLPQLCAPGEEARVVTVAS 235
                 688899**********************9998876511556667776542111467778888833323333333445556666665899********9877654..56677888888888888999999999999999999999998 PP

>> TIGR02823  oxido_YhdH: putative quinone oxidoreductase, YhdH/YhfP family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.0   0.0   4.1e-05     0.014     148     180 ..      94     126 ..      79     147 .. 0.82

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 4.1e-05
   TIGR02823 148 evlVtGAtGgVgslavalLsklGyevvavtgkk 180
                  + VtGA+ g+g  a a+L+++G+ vv  +  +
  MMETSP1137-20121227|7786_1  94 CIAVTGAASGIGREAAAFLAQRGFPVVLCSRSH 126
                 689**********************98765443 PP

>> TIGR01500  sepiapter_red: sepiapterin reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   6.8e-05     0.023       4      48 ..      96     136 ..      93     170 .. 0.85

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 6.8e-05
   TIGR01500   4 lvtGasrGfGrelaqelakrlkaegsvlvLlaRndeaLkeskaei 48 
                  vtGa+ G+Gre a  la+    +g  +vL +R++  ++++ + i
  MMETSP1137-20121227|7786_1  96 AVTGAASGIGREAAAFLAQ----RGFPVVLCSRSHAKVQKAVQYI 136
                 69****************9....899********99999876665 PP

>> TIGR03971  SDR_subfam_1: oxidoreductase, SDR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.2   0.00027     0.091       3      47 ..      92     137 ..      90     151 .. 0.80
   2 ?   -0.5   0.0      0.41   1.4e+02     163     210 ..     259     309 ..     252     357 .. 0.69

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 0.00027
   TIGR03971   3 GkvalitGaarGqGraeavrlaaeGadiiaidl.ceplsdvvtypa 47 
                 G    +tGaa G Gr +a  la+ G  ++ +    +++++ v+y a
  MMETSP1137-20121227|7786_1  92 GCCIAVTGAASGIGREAAAFLAQRGFPVVLCSRsHAKVQKAVQYIA 137
                 666779*******************999877641456777777766 PP

  == domain 2    score: -0.5 bits;  conditional E-value: 0.41
   TIGR03971 163 lahyaaakhGlvgltktlanel...aeygirvnsihPtsvdtamiepeamr 210
                 +a y  +k   v +++ la+ l   a+  +    +hP  v+t++ ++  ++
  MMETSP1137-20121227|7786_1 259 TAAYGESKLANVLFAQELAQRLpltADQRLTSLCVHPGVVATSLFREFGAA 309
                 567777888888888888887732244445555689999999998754443 PP

>> TIGR01829  AcAcCoA_reduct: acetoacetyl-CoA reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0    0.0002     0.068       5      62 ..      97     157 ..      94     200 .. 0.68
   2 ?   -1.4   0.0      0.92   3.2e+02     149     188 ..     261     303 ..     258     308 .. 0.80

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 0.0002
   TIGR01829   5 vtGglgGiGtaickrlakdGykvvanvapneerakewlqek...evegfdvavvkadvssf 62 
                 vtG+  GiG++ +  la+ G+ vv   +++++ +k+++      +v+  ++a v+ d  s+
  MMETSP1137-20121227|7786_1  97 VTGAASGIGREAAAFLAQRGFPVVLCSRSHAKVQKAVQYIAglpGVQSEKLASVTFDQCSV 157
                 9**********************98877766655555444300155556666666554443 PP

  == domain 2    score: -1.4 bits;  conditional E-value: 0.92
   TIGR01829 149 nysaakaGliGftkalaqe...gakkgvtvnviaPGyiatemv 188
                  y  +k   + f++ laq    +a + +t   + PG +at + 
  MMETSP1137-20121227|7786_1 261 AYGESKLANVLFAQELAQRlplTADQRLTSLCVHPGVVATSLF 303
                 6778888888899999997444689999999********9875 PP

>> TIGR02824  quinone_pig3: putative NAD(P)H quinone oxidoreductase, PIG3 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.1   0.00014     0.048     136     181 ..      88     133 ..      81     175 .. 0.90

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 0.00014
   TIGR02824 136 klkagetvLihggasGiGttaiqlakalgakvlvtagsdekleaae 181
                  l++g  + + g+asGiG  a  +  + g  v+   +s+ k++ a 
  MMETSP1137-20121227|7786_1  88 ALAEGCCIAVTGAASGIGREAAAFLAQRGFPVVLCSRSHAKVQKAV 133
                 578899999**************999***************99543 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (408 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       139  (0.0338859); expected 82.0 (0.02)
Passed bias filter:                      109  (0.0265724); expected 82.0 (0.02)
Passed Vit filter:                        22  (0.00536324); expected 4.1 (0.001)
Passed Fwd filter:                        12  (0.0029254); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.36u 0.17s 00:00:00.53 Elapsed: 00:00:00.61
# Mc/sec: 882.81
//
Query:       MMETSP1137-20121227|7787_1  [L=1158]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.6e-25   85.5   0.0    4.6e-25   85.5   0.0    1.9  2  TIGR03903 TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
    1.4e-05   22.5   0.0    2.4e-05   21.7   0.0    1.3  1  TIGR03724 arch_bud32: Kae1-associated kinase Bud32
     0.0014   15.1   0.1     0.0021   14.5   0.0    1.2  1  TIGR01982 UbiB: 2-polyprenylphenol 6-hydroxylase


Domain annotation for each model (and alignments):
>> TIGR03903  TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.5   0.0   3.3e-28   4.6e-25       3     189 ..     247     420 ..     245     479 .. 0.83
   2 ?   -4.2   3.0       0.4   5.5e+02     210     287 ..     687     763 ..     681     819 .. 0.67

  Alignments for each domain:
  == domain 1    score: 85.5 bits;  conditional E-value: 3.3e-28
   TIGR03903   3 ghkvaikllRedaaeeerlvaRFrReialCarLshPnivaLlDsGeaedgllFavFeyveGrtlrevLaadGaLpaaetgrLmlqvLDalaaahdaGvvhRDLkPqnimvsaadveshakvLDFGigaLlpgvedadeatltrttevlGsPaYaaPeqLRgepvtaksDlYaWGLivleCLtGkrvv 189
                 gh va+k +  + +++ +l a  + ei+l  +L+hP+iv+  +  ++ d  l+ v eyve   l+++L+  G  p +  +  m qvL +l   h++Gv hRD+k  n+++++ ++    k+ DFG++  l++  +         + v+G+P + aPe +     t++sD+++ G  vle LtG++  
  MMETSP1137-20121227|7787_1 247 GHFVAVKEIPMKGMKQGHLQA-VQSEIELLHHLQHPQIVRFYETIRTSD-HLYLVLEYVENGSLANILKLFGKFPEHILVVYMRQVLQGLEWLHSHGVCHRDIKGANLLITKDGQ---VKLADFGVAGKLTDSVK--------PNSVVGTPYWMAPEIIEMSCFTTASDIWSLGCTVLELLTGEPPY 420
                 677888888888777777766.799*********************999.9************************************************************9886...5788****988777655........688*************************************9754 PP

  == domain 2    score: -4.2 bits;  conditional E-value: 0.4
   TIGR03903 210 PsaiaghpLge.vLRkalnkdvrqRaasaealaerfralelaalvGilrageraGrkaiaePlvaaGtlaeeargerRq 287
                 P++ ag + g+ +LR+a +  + + a +a a  e+ ra    +  G+ +  +r Gr+  ae  +aaG ++    ++  q
  MMETSP1137-20121227|7787_1 687 PPSTAGRQSGKaLLRNAKESAAIDAAVAA-ASREQQRAGSWHEAAGHSDRSPRDGREGDAEADAAAGRVSSTE-VGSTQ 763
                 66677777664267877776666655555.556999******************************9998766.33333 PP

>> TIGR03724  arch_bud32: Kae1-associated kinase Bud32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.7   0.0   1.8e-08   2.4e-05      70     138 ..     294     370 ..     270     380 .. 0.85

  Alignments for each domain:
  == domain 1    score: 21.7 bits;  conditional E-value: 1.8e-08
   TIGR03724  70 eekkivmeyiegkklkdlleekel.......ellkevGelvgklHkagivhgDlttsNiiv.kddklyliDfGLgkk 138
                 ++  +v+ey+e+  l ++l+   +        ++++v + +  lH++g++h D+  +N+++ kd+++ l DfG + k
  MMETSP1137-20121227|7787_1 294 DHLYLVLEYVENGSLANILKLFGKfpehilvVYMRQVLQGLEWLHSHGVCHRDIKGANLLItKDGQVKLADFGVAGK 370
                 556799***********99987667888888999************************99846899*******9765 PP

>> TIGR01982  UbiB: 2-polyprenylphenol 6-hydroxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.0   1.5e-06    0.0021     234     309 ..     298     374 ..     276     379 .. 0.72

  Alignments for each domain:
  == domain 1    score: 14.5 bits;  conditional E-value: 1.5e-06
   TIGR01982 234 ltlewidgipvsdleklkeaGldlk.alaenlvesflkqvlrdgfFHaDlHpGNilvakdgkiialDfGivgrlsee 309
                 l+le+++  +++++ kl  +  +    +  + v   l+    +g+ H D+   N+l++kdg++ + DfG+ g+l+++
  MMETSP1137-20121227|7787_1 298 LVLEYVENGSLANILKLFGKFPEHIlVVYMRQVLQGLEWLHSHGVCHRDIKGANLLITKDGQVKLADFGVAGKLTDS 374
                 5667777777776666654432222022223333335566789*******************************976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1158 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        75  (0.0182838); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.69u 0.14s 00:00:00.83 Elapsed: 00:00:00.97
# Mc/sec: 1575.70
//
Query:       MMETSP1137-20121227|7788_1  [L=69]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (69 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        33  (0.00804486); expected 82.0 (0.02)
Passed bias filter:                       32  (0.00780107); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.17s 00:00:00.29 Elapsed: 00:00:00.54
# Mc/sec: 168.65
//
Query:       MMETSP1137-20121227|7789_1  [L=291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0063   14.0   2.0      0.024   12.1   0.2    2.1  2  TIGR00044 TIGR00044: pyridoxal phosphate enzyme, YggS family


Domain annotation for each model (and alignments):
>> TIGR00044  TIGR00044: pyridoxal phosphate enzyme, YggS family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.1   0.2   5.8e-06     0.024     166     216 ..      30      82 ..      26      89 .. 0.61
   2 ?    1.2   0.1     0.012        50      27      67 ..     114     152 ..     107     162 .. 0.79

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 5.8e-06
   TIGR00044 166 altdseeeqeesfr.elkklfek..lkqasklslidkLSmGmsdDfeeAIaaGa 216
                 a++ + +e + ++  ++ k+++k  lk+++  +    L mG++ D+++AI a +
  MMETSP1137-20121227|7789_1  30 AWECDRQECRXAAAsNASKAAQKemLKEKAA-QREAALAMGLTKDMQKAISADT 82 
                 5565555544433303333332211444444.56779*************9865 PP

  == domain 2    score: 1.2 bits;  conditional E-value: 0.012
   TIGR00044  27 ekvkllaVsKtkpasaIqeaydagqreFgEnyvQelveKik 67 
                  +v+lla +K + a+++++ ++a+  +     vQ ++ K +
  MMETSP1137-20121227|7789_1 114 ATVQLLAAAKARHAANVKAKMGASAAK--QASVQAAKAKKR 152
                 5899*************9999888765..446777666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (291 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       228  (0.0555826); expected 82.0 (0.02)
Passed bias filter:                       96  (0.0234032); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.25u 0.17s 00:00:00.42 Elapsed: 00:00:00.37
# Mc/sec: 1038.08
//
Query:       MMETSP1137-20121227|7790_1  [L=892]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
          0 1481.5   0.0          0 1481.3   0.0    1.0  1  TIGR00117 acnB: aconitate hydratase 2
    6.2e-46  154.7   0.0    5.3e-45  151.7   0.0    2.0  1  TIGR02086 IPMI_arch: 3-isopropylmalate dehydratase, large subunit
    8.6e-46  154.1   0.0    2.4e-45  152.6   0.0    1.7  1  TIGR01343 hacA_fam: homoaconitate hydratase family protein
    3.5e-32  109.2   0.0    3.4e-22   76.2   0.0    2.3  2  TIGR01342 acon_putative: putative aconitate hydratase
    1.9e-25   87.5   0.0    7.8e-22   75.6   0.0    2.8  2  TIGR02083 LEU2: 3-isopropylmalate dehydratase, large subunit
    1.7e-20   70.9   0.0      2e-17   60.7   0.0    2.1  2  TIGR00170 leuC: 3-isopropylmalate dehydratase, large subunit
    3.8e-13   46.5   0.0    7.6e-13   45.5   0.0    1.4  2  TIGR00139 h_aconitase: homoaconitase
    5.5e-05   18.8   0.2    0.00054   15.6   0.0    2.7  3  TIGR01341 aconitase_1: aconitate hydratase 1


Domain annotation for each model (and alignments):
>> TIGR00117  acnB: aconitate hydratase 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ! 1481.3   0.0         0         0       1     843 [.      23     868 ..      23     869 .. 0.98

  Alignments for each domain:
  == domain 1    score: 1481.3 bits;  conditional E-value: 0
   TIGR00117   1 lleeyrkhvaeraaegiaplplnakqvaalvellkndpeaeeefllellidrvppgvdeaayvkagflaaiakgevksplisaeeavellgtmlggynvepliealeskdkniakaaakalsktllvfdafddveelskt.neyakqvleswaeaewflnkeelaekitvtvfkvdgetntddlspapdaftrpdiplhalamlknkieeieq...rikalkqk.gvpvayvgdvvgtgssrksatnsvlwflgkdipfvpnkragglvlggkiapiffntaedsgalpievdvkdlnegdvikiypykgeitnket.evvatfklkpetlldevraggripliigrgltdkarealglsesevfkkakapaesakgftlaqklvgkacgvkgirpgtycepkvttvgsqdttgamtrdelkelaslgfdadlvlqsfchtaaypkpvdvkthktlpdfisqrggvalrpgdgvihswlnrmllpdtvgtggdshtrfplgisfpagsglvafaaatgvmpldmpesvlvrfkgelqpgitlrdlvnaipyyaikkglltvekkgkvnvfngrileieglpdlkveqafeltdasaersaagctiklnkepvieylksnivllkemiaegyedkrtlkrridamekwlanpelleadadaeyaavieidlaeikepilaapndpddvkllsevagdaidevfigscmtnighfraagkileaak.tvkarlwvvpptrmdeqqlieegyyaifgaagartevpgcslcmgnqarvedgatvfststrnfdnrlgkgakvylgsaelaavaallgkiptkeeylalvsekvesakdklyrylnfnelenfe 843
                 ++eey+khvaer+++gi plpl+a ++a+lv++l ++pe+e+e+ll ll++rvppgvdeaayvkag+laai+kg + splis  +avellg+m+ggyn++pl++al+  d ++++aa ka+ k  l+fda +dv+++s   ne ak+v+++wa+a+wf+ k+e++ek+tvtvfkv getntddlspapda++rpdiplhalamlk  +e+i +   +i++l  k g+p+ayvgdvvgtgssrksatns+lw++g+dip+vpnkr+gg+++g kiapiffnt+edsga+p+e+dv+d+n+gdvi+i py+g ++ + t +vv+tfk+k+++l+devraggripliigrg+t++ar++lgl+es vf+       +a gftlaqk+vg acg  g++pg ycep++ttvgsqdttg+mtrdelk+la+lgf+adlv+qsfchtaaypkpvdvkth+tlpdfi++r gv+lrpgdg+ihswlnrmllpdtvgtggdshtrfp+gisfpagsglvafaaa gvmpldmpesvlvrf g +qpgitlrdlv+aipyya ++glltvekkgk+nvf+gr+leiegl  lk eqafel+dasaersaagctikl+kep+ieyl sn+ +lk+miaegy++++t++rri++me+wl+np+l+ead +a y + ++i+l+e+kep+l+apndpdd++llsev+g++idevfigscmtnighfraagk+l+a++ ++++rlwv+ppt+md++ql++egyy+i+g+ garte+pgcslcmgnqarv+d++tv+ststrnf+nrlgkga+vyl+saelaavaa++gk+pt++eyla    kv++   ++yrylnf++l n++
  MMETSP1137-20121227|7790_1  23 FMEEYNKHVAERKELGIVPLPLDAARTADLVKMLSDPPEDEKEELLWLLTNRVPPGVDEAAYVKAGYLAAITKGTASSPLISKVHAVELLGSMMGGYNIQPLVDALD--DPELSDAAVKAFAKLTLIFDAQNDVHDKSADgNEAAKKVVQAWADAQWFVSKPEVPEKMTVTVFKVVGETNTDDLSPAPDAWSRPDIPLHALAMLKYPREGITNakeQIDELYAKtGFPLAYVGDVVGTGSSRKSATNSILWYMGDDIPMVPNKRTGGVCIGAKIAPIFFNTMEDSGAFPLEMDVNDMNMGDVIDIXPYEGVVKRHGTdDVVTTFKVKTDVLFDEVRAGGRIPLIIGRGVTQRARQFLGLGESTVFRSIG-GDYKAEGFTLAQKMVGAACGKAGVLPGEYCEPRMTTVGSQDTTGPMTRDELKDLACLGFSADLVMQSFCHTAAYPKPVDVKTHHTLPDFIMNRAGVSLRPGDGIIHSWLNRMLLPDTVGTGGDSHTRFPIGISFPAGSGLVAFAAAAGVMPLDMPESVLVRFSGTMQPGITLRDLVHAIPYYAKQRGLLTVEKKGKINVFSGRVLEIEGLGHLKCEQAFELSDASAERSAAGCTIKLDKEPIIEYLTSNVTMLKWMIAEGYGERKTIERRIASMENWLENPVLMEADPKATYYETLDINLDELKEPVLCAPNDPDDARLLSEVTGEKIDEVFIGSCMTNIGHFRAAGKLLNATEsSLPTRLWVAPPTKMDAAQLVDEGYYSIYGRVGARTEMPGCSLCMGNQARVADKSTVVSTSTRNFPNRLGKGANVYLASAELAAVAAIMGKLPTVDEYLAAWE-KVNTDAADTYRYLNFDQLPNYT 868
                 689********************************************************************************************************..*************************9987555****************************************************************988876554449999987659*****************************************************************************************9989**********************************************8765.567899*********************************************************************************************************************************************************************************************************************************************************************************************************************************************************998789************************************************************************************************9875.55555666************96 PP

>> TIGR02086  IPMI_arch: 3-isopropylmalate dehydratase, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  151.7   0.0     1e-47   5.3e-45       2     407 ..     398     836 ..     397     840 .. 0.89

  Alignments for each domain:
  == domain 1    score: 151.7 bits;  conditional E-value: 1e-47
   TIGR02086   2 tlaekilsekvGke.vkaGeivevkvDlvmvhDgtgplvikalrelgakvekkekivlvfDhvvPaptveaaelqkeirefakelgikvfdvgeGichqvlvekgyakpgkvvvgaDshtttsGalgafatGlGatDvalalatGktWlkvPesikveleGkleekvtakDvi............leivkelgadgatykaieftgeeiealsldeRltlsnlaveagakaglvepdee.tleylkkrrge............................frilkadedakyeeeieidlsel.eplvavPhsvdnvkeveevegteidqvfiGsCtnGRledlkiaaeilegrevhkdvrlivvPasrkvyekaleeGlietlveaGaiiltpgCGPClGahlGvladgevivsttnRnfkGRmGspkaeiYLasPavaavsaveGeit 407
                 tla+k++ +++Gk  v +Ge  e ++  v  +D+tgp++  +l++l+   ++ + ++  f h++  p+    ++++++ +f  +        g+Gi+h  l       p +v  g+Dsht    +++ f    G+  va+a+a G + l +Pes+ v ++G ++  +t +D++            l++ k+ + + ++++++e+ g    +l+ ++ + ls+ + e  a    ++ d+e + eyl ++++                               +++ad++a+y+e ++i+l+el ep+  +P+++d+ + ++ev g +id+vfiGsC    +  +++a ++l+  e     rl v+P  +    + ++eG+ +++ ++Ga    pgC  C+G+   v ad+ ++vst+ Rnf  R+G+  a++YLas ++aav+a+ G++ 
  MMETSP1137-20121227|7790_1 398 TLAQKMVGAACGKAgVLPGEYCEPRMTTVGSQDTTGPMTRDELKDLACLGFSADLVMQSFCHTAAYPKPVDVKTHHTLPDFIMNRAGVSLRPGDGIIHSWLNRM--LLPDTVGTGGDSHTRFPIGIS-F--PAGSGLVAFAAAAGVMPLDMPESVLVRFSGTMQPGITLRDLVhaipyyakqrglLTVEKKGKINVFSGRVLEIEGLG--HLKCEQAFELSDASAERSAAGCTIKLDKEpIIEYLTSNVTMlkwmiaegygerktierriasmenwlenPVLMEADPKATYYETLDINLDELkEPVLCAPNDPDDARLLSEVTGEKIDEVFIGSCMT-NIGHFRAAGKLLNATESSLPTRLWVAPPTKMDAAQLVDEGYYSIYGRVGARTEMPGCSLCMGNQARV-ADKSTVVSTSTRNFPNRLGK-GANVYLASAELAAVAAIMGKLP 836
                 89***********99************************************************99999888899999999987766667788*******99876..99***********98776654.4..4466779*********************************9822222222222234444445556778888888877..99****************99999987766268***9999988999999**************9999876667899*****************5577899**************************64.5999**********************************************************98877.78999**************7.689****************985 PP

>> TIGR01343  hacA_fam: homoaconitate hydratase family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  152.6   0.0   4.7e-48   2.4e-45       1     408 [.     398     835 ..     398     839 .. 0.87

  Alignments for each domain:
  == domain 1    score: 152.6 bits;  conditional E-value: 4.7e-48
   TIGR01343   1 tiaekiLakksgk.evvaGdlivaevdlvlvhditaplaikaleelgidkvfdpekivivvdhavPaktikaaeaqklvrefv.kkkGikyfydvgeGiahqvlaekglvkPgelvvgadshtctyGalgafatGvGstdlalaiatGkvWlkvPesikvkltGklkpgvtakdvvLev...ikeiGvdGaty..kavefeg.....etvkkldveerltlanlaieaGgktGiiead.ektleylkerake...........................kakvvksdedaeyakeveidvskl.epvvavPhevdnvkevsevegievdqvfiGsCtnGrledLreaakilkgrkvaedvrliviPaskkvykqalkeGlieifveaGavvstpgCgpClGahqGvLaegevCistsnrnfkGrmGdkeaeiyLasPavaaasavkGri 408
                 t+a+k++ ++ gk  v +G+  + ++ +v  +d+t+p++  +l++l+    f+++ ++  + h++   +    ++++++ +f+ ++ G++     g+Gi+h  l+    + P+++  g+dsht    ++ +f +G  s  +a a+a+G + l +Pes+ v++ G ++pg+t +d+v  +    k+ G        k   f+g     e + +l+ e+ + l++ + e  +    i+ d e ++eyl+ + +                            +   +++d++a y++ ++i++++l epv+++P+ +d+++ +sev+g ++d+vfiGsC    +  +r+a k+l+  + +  +rl v P +k    q ++eG  +i+ + Ga    pgC+ C+G++  v a+    +sts rnf  r+G+  a++yLas  +aa++a++G++
  MMETSP1137-20121227|7790_1 398 TLAQKMVGAACGKaGVLPGEYCEPRMTTVGSQDTTGPMTRDELKDLA-CLGFSADLVMQSFCHTAAYPKPVDVKTHHTLPDFImNRAGVS--LRPGDGIIHSWLNRM--LLPDTVGTGGDSHTRFPIGI-SFPAG--SGLVAFAAAAGVMPLDMPESVLVRFSGTMQPGITLRDLVHAIpyyAKQRGLLTVEKkgKINVFSGrvleiEGLGHLKCEQAFELSDASAERSAAGCTIKLDkEPIIEYLTSNVTMlkwmiaegygerktierriasmenwleNPVLMEADPKATYYETLDINLDELkEPVLCAPNDPDDARLLSEVTGEKIDEVFIGSCMT-NIGHFRAAGKLLNATESSLPTRLWVAPPTKMDAAQLVDEGYYSIYGRVGARTEMPGCSLCMGNQARV-ADKSTVVSTSTRNFPNRLGK-GANVYLASAELAAVAAIMGKL 835
                 899****99999989*****************************999.7899***********998777777788888888863689999..899********9766..99***********9877666.46665..557999********************************98763224444432222211222233311111335599***************999999998835699****997767899******************998876677899****************9558999***************************64.59************************************************************98776.899999*************6.79*****************87 PP

>> TIGR01342  acon_putative: putative aconitate hydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.6   0.0   4.2e-11   2.1e-08       1     173 [.     398     566 ..     398     598 .. 0.82
   2 !   76.2   0.0   6.6e-25   3.4e-22     239     406 ..     669     835 ..     653     859 .. 0.91

  Alignments for each domain:
  == domain 1    score: 30.6 bits;  conditional E-value: 4.2e-11
   TIGR01342   1 tlaekilddhlvegdlepgeeiaikidqtlsqdatgtmvylefealevdevktelavsyidhq.tlqtdfknaddhkylrsvakkygiylskpgngichqvhkerfakpgktllgsdshtptagglgqlaigaggldvavamageayylkmpkvvnvrlkgklpewvtakdvil 173
                 tla+k++     +  + pge    ++    sqd+tg m+  e++ l      ++l ++   h   +         h     + ++ g+ l +pg+gi h   ++r+  p     g dsht  + g+   a g+g   va a a + + l+mp+ v vr+ g +   +t +d++ 
  MMETSP1137-20121227|7790_1 398 TLAQKMVGAACGKAGVLPGEYCEPRMTTVGSQDTTGPMTRDELKDLACLGFSADLVMQSFCHTaAYPKPVDVKTHHTLPDFIMNRAGVSL-RPGDGIIHS-WLNRMLLPDTVGTGGDSHTRFPIGISFPA-GSG--LVAFAAAAGVMPLDMPESVLVRFSGTMQPGITLRDLVH 566
                 677888888888888899**9999**99***************************98866665055555544445555556777778776.9*******7.68999*****************9987543.555..467777778889****************99**999875 PP

  == domain 2    score: 76.2 bits;  conditional E-value: 6.6e-25
   TIGR01342 239 efvelladadaeydevivvdlsel.epliaepsspdnvvpvrevegikveqvvvgsctnsayvdllraakllegrevskdvvlivapgskqalellaregallellkagvrileaacgacigigfvpasdsvslrsfnrnfkgragieddkvylaspevavaaaiagei 406
                 + v + ad+ a y e + ++l el ep++  p+ pd+   + ev g k+++v +gsc          a kll+  e s  + l vap +k  +  l  eg+   + + g+r     c  c+g     a +s  + +  rnf  r g   ++vylas e a+ aai g++
  MMETSP1137-20121227|7790_1 669 NPVLMEADPKATYYETLDINLDELkEPVLCAPNDPDDARLLSEVTGEKIDEVFIGSCMT-NIGHFRAAGKLLNATESSLPTRLWVAPPTKMDAAQLVDEGYYSIYGRVGARTEMPGCSLCMGNQARVADKSTVVSTSTRNFPNRLGK-GANVYLASAELAAVAAIMGKL 835
                 446689*****************978*******************************64.356678899**********************99999****************************9999******************5.689***************985 PP

>> TIGR02083  LEU2: 3-isopropylmalate dehydratase, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.7   0.0    0.0003      0.15       2     236 ..     398     635 ..     397     672 .. 0.62
   2 !   75.6   0.0   1.5e-24   7.8e-22     246     414 ..     672     836 ..     651     841 .. 0.91

  Alignments for each domain:
  == domain 1    score: 8.7 bits;  conditional E-value: 0.0003
   TIGR02083   2 tlaekiladkagkeevkpgelilakldlvlgndvttplaikafkelgvkkvfdkdkvalvldhftp.nkdikaaeqvklirefakekeiekyfeigelgvehallpekglvvsgdliigadshtctygalgafatgvgstdlavamatgkawfkvpeaikfvlkgklkdyvsakdlilki......igkigvdgalykslefsg.....eglkelsvddrltianmaieagaktgifevdek.tieyv 236
                 tla+k++    gk  v pge    ++  v ++d t p++ +++k+l +   f  d v     h +   k +   ++  l   + +  +++     g+ g+ h+ l    + ++  +  g dsht     +g+ +   gs  +a a a g + + +pe++ + + g +++ ++ +dl+  i       g + v+  + k   fsg     egl +l  ++ + +++ + e  a    ++ d+   iey 
  MMETSP1137-20121227|7790_1 398 TLAQKMVGAACGKAGVLPGEYCEPRMTTVGSQDTTGPMTRDELKDLACL-GFSADLVMQSFCHTAAyPKPVDVKTHHTLPDFIMNRAGVSL--RPGD-GIIHSWLNR--MLLPDTVGTGGDSHTRF--PIGI-SFPAGSGLVAFAAAAGVMPLDMPESVLVRFSGTMQPGITLRDLVHAIpyyakqRGLLTVEK-KGKINVFSGrvleiEGLGHLKCEQAFELSDASAERSAAGCTIKLDKEpIIEYL 635
                 6677777777777777777777777777777777777777777666654.34455444444444331243433333333333333334432..3333.666776643..55677777899999864..3442.444566678888999****************************976622111123333332.23555677722222344567788888888888888887777777765245665 PP

  == domain 2    score: 75.6 bits;  conditional E-value: 1.5e-24
   TIGR02083 246 iykadedakyervieidlselepqv.afphlpentkeideaekeeikidqvvigsctngrledlrlaaeilkgkkvakevrliilpasqkvylealkeglleifieagavvstptcgpclgghmgilaegeravsttnrnfvgrmghpksevylaspavaaasaikgkia 414
                 + +ad  a y++ ++i+l+el++ v   p  p++++ ++e++    kid+v igsc    +  +r a ++l+  + +  +rl + p ++    + ++eg+ +i+   ga    p c  c+g     +a+   +vst+ rnf  r+g+  ++vylas ++aa +ai gk+ 
  MMETSP1137-20121227|7790_1 672 LMEADPKATYYETLDINLDELKEPVlCAPNDPDDARLLSEVT--GEKIDEVFIGSCMT-NIGHFRAAGKLLNATESSLPTRLWVAPPTKMDAAQLVDEGYYSIYGRVGARTEMPGCSLCMGNQAR-VADKSTVVSTSTRNFPNRLGKG-ANVYLASAELAAVAAIMGKLP 836
                 5789*****************7655278*************9..6799********75.699**********************************************************98876.589999**************85.79****************986 PP

>> TIGR00170  leuC: 3-isopropylmalate dehydratase, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.0   0.0    0.0004      0.21     116     188 ..     500     569 ..     479     638 .. 0.77
   2 !   60.7   0.0   3.9e-20     2e-17     335     462 ..     713     837 ..     707     841 .. 0.92

  Alignments for each domain:
  == domain 1    score: 8.0 bits;  conditional E-value: 0.0004
   TIGR00170 116 gltlpgktivcgdshtathgafgalafgigtsevehvlatqtlkqaraktlkievegklakgitakdiilaii 188
                  + lp +    gdsht     +  ++f  g+  v    a+  +  + + ++ ++ +g++++git +d++ ai 
  MMETSP1137-20121227|7790_1 500 RMLLPDTVGTGGDSHTRFP--I-GISFPAGSGLVAFAAAAGVMPLDMPESVLVRFSGTMQPGITLRDLVHAIP 569
                 4678888888999998753..3.479999****************************************9874 PP

  == domain 2    score: 60.7 bits;  conditional E-value: 3.9e-20
   TIGR00170 335 kdikvdkvfigsctnsriedlraaaevvkgkkvadnvklalvvpgsglvkkqaekegldkifleagfewreagcslclgmnndvldeyercastsnrnfegrqgkgarthlvspamaaaaavagkfvd 462
                 +  k+d+vfigsc  + i  +raa ++++    +   +   v p +++  +q   eg   i+   g+    +gcslc+g n+ ++ +     sts rnf  r gkga  +l s  +aa+aa++gk+  
  MMETSP1137-20121227|7790_1 713 TGEKIDEVFIGSCM-TNIGHFRAAGKLLNATESSLPTR-LWVAPPTKMDAAQLVDEGYYSIYGRVGARTEMPGCSLCMG-NQARVADKSTVVSTSTRNFPNRLGKGANVYLASAELAAVAAIMGKLPT 837
                 5569*********7.569***********999988888.8999***********************************9.889999999***********************************9855 PP

>> TIGR00139  h_aconitase: homoaconitase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.0   0.0       1.4   7.2e+02     588     605 ..     253     270 ..     198     280 .. 0.82
   2 !   45.5   0.0   1.5e-15   7.6e-13     114     468 ..     503     850 ..     467     866 .. 0.80

  Alignments for each domain:
  == domain 1    score: -4.0 bits;  conditional E-value: 1.4
   TIGR00139 588 gfnfgtgssreqaatall 605
                 g   gtgssr+ a+ ++l
  MMETSP1137-20121227|7790_1 253 GDVVGTGSSRKSATNSIL 270
                 556799999999998887 PP

  == domain 2    score: 45.5 bits;  conditional E-value: 1.5e-15
   TIGR00139 114 fpltlavasdshsntygglgs.lgtpivrtdaaavwatgktwwqippvakvelkgvlpqgvsgkdvivalcglfnkddvln....haie.ftgs...eeslralsvdtrltianmttewgalsglfpvdkv.lkdwlknkatlaklgladgpfktrkaerfthplleekakipl..kadkdakyakklildlaslsp.yvsgpnsvkvattlkeleaqdikvdkaylvsctnsrlsdlaaaadvvkeaaeknggkvnkvagvkfyvaaasieeeldaeksgdwekllkagaiqlpagcgpciglgagllepgevgisasnrnfkgrmgskeakaylaspevvaasallgklsspaevlstegwtevir 468
                  p t+    dsh+    g+    g+ +v   a    a+g    ++p    v + g + +g++ +d++ a+    ++  +l       i+ f+g     e l  l  ++ + +++ ++e  a    + +dk  ++++l +++t+ k  +a+g    ++ er   + +e+ +++p+  +ad +a y   l ++l  l +  +  pn    a  l e+  +  k+d  ++ sc    +  ++aa +++  +              +++va  +    ++  ++g +    + ga     gc  c+g  a + +   v +s+s rnf  r+g k a  ylas e+ a +a++gkl +  e+l++  w +v  
  MMETSP1137-20121227|7790_1 503 LPDTVGTGGDSHTRFPIGISFpAGSGLVAFAA----AAGVMPLDMPESVLVRFSGTMQPGITLRDLVHAIPYYAKQRGLLTvekkGKINvFSGRvleIEGLGHLKCEQAFELSDASAERSAAGCTIKLDKEpIIEYLTSNVTMLKWMIAEGYGERKTIER-RIASMENWLENPVlmEADPKATYYETLDINLDELKEpVLCAPNDPDDARLLSEVTGE--KIDEVFIGSCMT-NIGHFRAAGKLLNATESSL--------PTRLWVAPPTKMDAAQLVDEGYYSIYGRVGARTEMPGCSLCMGNQARVADKSTV-VSTSTRNFPNRLG-KGANVYLASAELAAVAAIMGKLPTVDEYLAA--WEKVNT 850
                 67777777777777776665314555554443....568888999**********************99976555555553111112322777422247899999************************86489***********999999776666666.8899********5348999**************98615689**********999865..89********75.5889999999887654443........57899**99999999999*************99999*******99988887766.9***********9.689********************99999875..555554 PP

>> TIGR01341  aconitase_1: aconitate hydratase 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0       0.2     1e+02     790     856 ..     287     349 ..     242     365 .. 0.63
   2 !   15.6   0.0     1e-06   0.00054     186     374 ..     502     714 ..     496     748 .. 0.67
   3 ?   -1.7   0.0      0.17        89     455     548 ..     753     834 ..     742     842 .. 0.66

  Alignments for each domain:
  == domain 1    score: -1.9 bits;  conditional E-value: 0.2
   TIGR01341 790 snlvgmGvlplefkqgedaetlgltgee.tidvddieelkpkkevtvelvkedgeketveavlridte 856
                    +g  + p+ f+ +ed+ +  l+ +  ++++ d+ ++ p + v  +   +d  ++t     ++ t+
  MMETSP1137-20121227|7790_1 287 GVCIGAKIAPIFFNTMEDSGAFPLEMDVnDMNMGDVIDIXPYEGVVKRHGTDD-VVTT----FKVKTD 349
                 4456777999*******999999998866999999999999988744433333.3333....333444 PP

  == domain 2    score: 15.6 bits;  conditional E-value: 1e-06
   TIGR01341 186 aypdsl.vGtdshttminGlGvlGwGvGGieaeaallGqpvslsvpeviGvkltGklreGvtatdlvltvtellrkkgvv.....gkfveffG.....eglkelsladratianmapeyGataaffpiddv.tlqylrlt..........g...rd..edkvelvekylkaqelfvddseepkytdvveldlsdv.easvaGpkrpqdrvalkevka 374
                 + pd++  G dsht    G+        G+ a aa  G  + l +pe + v++ G +++G+t  dlv  +    +++g++     gk   f G     egl +l   +   +++ + e  a+ +   +d++  ++yl             g   r+  e ++  +e++l+   l+  d  +++y ++++++l+++ e+ ++ p+ p+d   l+ev  
  MMETSP1137-20121227|7790_1 502 LLPDTVgTGGDSHTRFPIGISF--PAGSGLVAFAAAAG-VMPLDMPESVLVRFSGTMQPGITLRDLVHAIPYYAKQRGLLtvekkGKINVFSGrvleiEGLGHLKCEQAFELSDASAERSAAGCTIKLDKEpIIEYLTSNvtmlkwmiaeGygeRKtiERRIASMENWLENPVLMEAD-PKATYYETLDINLDELkEPVLCAPNDPDDARLLSEVTG 714
                 5678775688****99766665..33445556666555.367899************************9988888876422332466667773333346667777778889999999988888888887624567643211111111111111211123444555555555555433.55788899999999984578899999999888888865 PP

  == domain 3    score: -1.7 bits;  conditional E-value: 0.17
   TIGR01341 455 apGskvvtdylaesgllpyleelGfnlvGyGcttciGnsGpleeeveeaikendlevsavlsGnrnfegrihplvkanylaspplvvayalaGt 548
                 ap +k+ +  l++ g  +   ++G +    Gc+ c+Gn   + ++            + v +  rnf  r+ +     ylas  l    a+ G+
  MMETSP1137-20121227|7790_1 753 APPTKMDAAQLVDEGYYSIYGRVGARTEMPGCSLCMGNQARVADKS-----------TVVSTSTRNFPNRLGKGA-NVYLASAELAAVAAIMGK 834
                 6666666777777777777777777777778888888876655431...........222334677777776654.357777777666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (892 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        90  (0.0219405); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                        21  (0.00511945); expected 4.1 (0.001)
Passed Fwd filter:                         8  (0.00195027); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.85u 0.18s 00:00:01.03 Elapsed: 00:00:00.68
# Mc/sec: 1731.39
//
Query:       MMETSP1137-20121227|7792_1  [L=686]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.6e-17   59.2   0.0    2.4e-16   57.1   0.0    1.7  1  TIGR01389 recQ: ATP-dependent DNA helicase RecQ
    1.5e-09   35.0   0.0    5.2e-09   33.2   0.0    1.7  1  TIGR00614 recQ_fam: ATP-dependent DNA helicase, RecQ family
    1.6e-09   33.9   0.2    8.4e-09   31.5   0.1    1.9  1  TIGR04121 DEXH_lig_assoc: DEXH box helicase, DNA ligase-associated
    4.2e-08   29.7   0.2    1.6e-07   27.8   0.1    1.8  2  TIGR03817 DECH_helic: helicase/secretion neighborhood putative DEAH-box helicase
    9.8e-06   22.3   0.0      0.024   11.1   0.1    2.2  2  TIGR00643 recG: ATP-dependent DNA helicase RecG
     0.0085   12.1   0.2      0.033   10.2   0.0    1.8  2  TIGR01407 dinG_rel: putative DnaQ family exonuclease/DinG family helicase


Domain annotation for each model (and alignments):
>> TIGR01389  recQ: ATP-dependent DNA helicase RecQ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.1   0.0   3.4e-19   2.4e-16       9     375 ..     177     557 ..     171     567 .. 0.79

  Alignments for each domain:
  == domain 1    score: 57.1 bits;  conditional E-value: 3.4e-19
   TIGR01389   9 FGyeeFRggqeeiieevldgrdvlavlPtGGGkslCYqvPa.........Lllkgltvv.isPLisLmkDqvdqLraaGveaaalnstlsakeaqeilkalaagelklLYvaPerleqdk.flellerlkiallavDeahCvsqWGhDFRpeYkrlgelaerfpkapvialtatadaevre....divek.LelkdaaefvssfdRenla..fsvvkkenkkkqlleylkkereksGiiYassRkkveelaeaLeskgiealaYhaGlskkvRaeaqekFleddvkvvvatvaFGmGidksdvRfvihldlPknlesyyqeaGRaGRDGlkaeaillyseaDlallkrlieeseasedrkqieskkLdellayaetkkCrrklll 375
                  G+e+  + q+  +  +l+g+dvla   tG Gk l + +Pa         L ++g ++v i+P   L       Lr+           +    +++ + +   + +  L  +P rl+ +    + +   ++++l vDea  + + G  F  + +++++l  +  ++  + + at +++v++     i++k + ++ +++ vss     l   f v ++ ++   l ++lkk+ +k  i++ ss + v    e L+   +++l  h+  ++++R  +  +F  +   ++++t     G+d + v +++ +d P +  +y   +GR  R G +  a+l+  +++l++lk+l ++++ s +  +  s+kL ++ a +e    ++ +l 
  MMETSP1137-20121227|7792_1 177 MGFETLTEIQARAVPPLLRGQDVLAQAKTGSGKTLAFLIPAvellaraqwLPRHGCGMVtIAPTRELALQIYGILRELCAGHRQTHGMVIGGANRRAEAEKLVKGVAHLVATPGRLLDHLsSTKGFVVDNLQMLVVDEADRILEIG--FEEDLRAIVKLLPQKSRQ-TALFSATQTKNVADlarlAIQQKpVYVSAQQSEVSSATVSTLEqgFVVCESARRFLLLFTFLKKNLKKKVIVFFSSCNSVKYHSELLNYIDLPVLDLHGDQKQNKRTATFFEFCGASSGILLSTDVAARGLDIPAVDWIVQFDPPDEPKAYIHRVGRTARAGGRGRALLFLLPQELNFLKYL-KKANVSVNEYEFPSNKLANVQAQLEKLVSKNYYLH 557
                 799*************************************955333333334678887658999888877777788887766666666655555555555566678888999***997641455677889**************99..566666666665443333.23345666666543111144443244555555666666665543389999999999999************************************************************************************************************************986.55688888888999999999998887777666665 PP

>> TIGR00614  recQ_fam: ATP-dependent DNA helicase, RecQ family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.2   0.0   7.6e-12   5.2e-09       6     363 ..     176     544 ..     173     560 .. 0.77

  Alignments for each domain:
  == domain 1    score: 33.2 bits;  conditional E-value: 7.6e-12
   TIGR00614   6 vfglesfrpvqlevinavlegrdalvvmatGgGksLCyqlpavvs....dgltlvisPLisLmeDqvlqLkasdisatlLnsaqskeeakevladl.kdgklkllYvtPekvsksksllqkle.....erkkltliavDeahCisqWGhDfRsdykalgsL.kqklPsvpviaLtatasssvreDilklLklkkpqvtitsfdRpnlkyeveekks..kiledllkfiv......kefkgksGiiYClsrkkveqvaaeLqkkglaaaaYhagleesarkevqkkflrdeiqvvvatvafGmGinkpdvRfvihyslpksiesYYqesGRaGRDglksecvlfyapaDvallrrllveekdekkreyklkllekvek 363
                 + g+e   + q +++   l+g+d+l    tG Gk L + +pav +    + l    + ++ +     l L+  +i   l ++ + ++    +     +    kl+      v++  +ll++l         +l +++vDea  i + G  f +d +a+ +L  qk  + ++   +at +++v  D+   L +++  v++++ + +    +v   ++   + e  ++f+       k+ k k  i++  s ++v+  ++ L+  +l  +  h + ++++r+    +f      ++++t     G++ p v  ++ ++ p +  +Y   +GR  R g + +++lf  p+++++l+ l   + + ++ e+  ++l+ v++
  MMETSP1137-20121227|7792_1 176 KMGFETLTEIQARAVPPLLRGQDVLAQAKTGSGKTLAFLIPAVELlaraQWLPRHGCGMVTIAPTRELALQIYGILRELCAGHRQTH-GMVIGGANrRAEAEKLVKGVAHLVATPGRLLDHLSstkgfVVDNLQMLVVDEADRILEIG--FEEDLRAIVKLlPQKSRQTALF--SATQTKNVA-DL-ARLAIQQKPVYVSAQQSEVSSATVSTLEQgfVVCESARRFLLlftflkKNLKKKV-IVFFSSCNSVKYHSELLNYIDLPVLDLHGDQKQNKRTATFFEFCGASSGILLSTDVAARGLDIPAVDWIVQFDPPDEPKAYIHRVGRTARAGGRGRALLFLLPQELNFLKYLKKANVSVNEYEFPSNKLANVQA 544
                 578999999*********************************965211133444557788888888889999**9988777766555.3444333347778899999999999999******9333333345678***********99..7788888766513444444443..455555554.44.3466666666655555544444444433333566666666666666636777666.******************************************************9999***************************************************9988777777777777777777765 PP

>> TIGR04121  DEXH_lig_assoc: DEXH box helicase, DNA ligase-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.5   0.1   1.2e-11   8.4e-09      15     349 ..     183     504 ..     170     540 .. 0.67

  Alignments for each domain:
  == domain 1    score: 31.5 bits;  conditional E-value: 1.2e-11
   TIGR04121  15 rafQkevleaaeegesglliapTGaGKTlavflpsliela.akekpkkglkvlyitPLkaLakdieraleapieelgleirvelrtGDtssserarqrkkppdiLltTpEslaLllsskdaeklfkdlravvvDElHeLlgskRGdlleLaLarLrrlapelrvvglsAT.vgnleeaaevllgeekeekaklvkakekkalevesllpeeeeklPwaGhlglkaleevleeikk..arttlvFtNtRsqaEllfqaLleaneelaleialhHgsldkeqRekveaalkagklravvcTssLdLGvDfgdvdlviqvGspkgvaRllQRiGRsnHrlde 349
                 ++ Q +++  + +g++ l +a TG+GKTla  +p++  la a+  p++g  ++ i+P + La +i   l++ ++  +   + ++  G ++ ++ a++  k    L+ Tp  l   lss++   ++ +l+++vvDE   +l+    + l+  + +L   +++ ++   sAT  +n++++a++ ++++     + v+a+ + +++  ++ +  e+ +      +++ +  +++ +kk  ++ ++vF    +     + +Ll+  +   l++   Hg  ++++R+    ++   +  ++++T     G+D  +vd ++q   p   +  + R+GR++ + ++
  MMETSP1137-20121227|7792_1 183 TEIQARAVPPLLRGQDVLAQAKTGSGKTLAFLIPAVELLArAQWLPRHGCGMVTIAPTRELALQIYGILRELCAGHR--QTHGMVIGGANRRAEAEKLVKGVAHLVATPGRLLDHLSSTK-GFVVDNLQMLVVDEADRILEIGFEEDLRA-IVKLLP-QKSRQTALFSATqTKNVADLARLAIQQKP----VYVSAQ-QSEVSSATVSTL-EQGFVVC--ESARRFLLLFTFLKKnlKKKVIVFFSSCNSV-KYHSELLNYID---LPVLDLHGDQKQNKRTATFFEFCGASSGILLSTDVAARGLDIPAVDWIVQFDPPDEPKAYIHRVGRTARAGGR 504
                 567999999999***********************999985667789************************998655..5567778999999999999999999******9977777654.56889***********9998744444432.223322.22334445688834567777777776655....666662.223332222222.1222211..1111122222222221134566666554443.33445554433...3555557777777777777777777777777777777788888888888888777777777788777655554 PP

>> TIGR03817  DECH_helic: helicase/secretion neighborhood putative DEAH-box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.8   0.1   2.3e-10   1.6e-07      23     170 ..     168     319 ..     162     392 .. 0.75
   2 ?   -1.2   0.0      0.14        94     335     380 ..     463     508 ..     456     524 .. 0.80

  Alignments for each domain:
  == domain 1    score: 27.8 bits;  conditional E-value: 2.3e-10
   TIGR03817  23 pdvvaaleaaGieapwqhqaraaelahaGehvvvatgtasGkslayllPvlsalaed.....pratalylaPtkalaadqlravkelee..rdvraatydGdtpaeere.wirekaryvltnPdmlhlgilpsharWakflralryvvvdechsyr 170
                 p+ +aa+++ G e+  + qara      G++v   + t sGk+la+l+P+++ la++      +   + +aPt+ la      ++el    r+ +  +  G   ++e e  ++  a++v t P  l    l s      ++ +l+ +vvde+ +  
  MMETSP1137-20121227|7792_1 168 PETQAAIAKMGFETLTEIQARAVPPLLRGQDVLAQAKTGSGKTLAFLIPAVELLARAqwlprHGCGMVTIAPTRELALQIYGILRELCAghRQTHGMVIGGANRRAEAEkLVKGVAHLVAT-PGRLLDH-LSST--KGFVVDNLQMLVVDEADRIL 319
                 78899*************************************************999677533777899******************8777999999999988776655156666666655.5544333.3333..34578999999***998754 PP

  == domain 2    score: -1.2 bits;  conditional E-value: 0.14
   TIGR03817 335 atnalelGvdisGldavviaGfPGtvaslwqqaGraGrrgqdalvv 380
                 +t+    G+di  +d +v    P    ++  ++Gr+ r+g +  ++
  MMETSP1137-20121227|7792_1 463 STDVAARGLDIPAVDWIVQFDPPDEPKAYIHRVGRTARAGGRGRAL 508
                 6777778****************************99998654333 PP

>> TIGR00643  recG: ATP-dependent DNA helicase RecG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.1   0.1   3.5e-05     0.024     260     368 ..     200     317 ..     168     348 .. 0.78
   2 !    9.0   0.0   0.00016      0.11     486     563 ..     435     511 ..     409     534 .. 0.81

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 3.5e-05
   TIGR00643 260 LlqGdVGsGKTvVavlallavi.......esGyqvalmaPTeiLAeQhyeklrelleplgievalLtgslkkkkkkelleeiasGeielvvGThallqe.....kvefkeLalviiDEQhr 368
                 L q   GsGKT+  ++ +++++       ++G  ++ +aPT  LA Q y  lrel +    + +++ g    +++++  e++ +G  +lv     ll           ++L++ ++DE  r
  MMETSP1137-20121227|7792_1 200 LAQAKTGSGKTLAFLIPAVELLaraqwlpRHGCGMVTIAPTRELALQIYGILRELCAGHRQTHGMVIGG---ANRRAEAEKLVKGVAHLVATPGRLLDHlsstkGFVVDNLQMLVVDEADR 317
                 678899*****966666655552222223479999**********************999999999886...568888999999*999998777776531111033457999999999877 PP

  == domain 2    score: 9.0 bits;  conditional E-value: 0.00016
   TIGR00643 486 allhgrlksdekeevleeFrekevdiLvaTtviEvGvdvPnatvmviedaeRfGlsqLHQLRGRvgRgekksyclLva 563
                   lhg  k++++ + + eF   +  iL++T v   G+d+P +  +v  d+     + +H + GR +R   ++ +lL  
  MMETSP1137-20121227|7792_1 435 LDLHGDQKQNKRTATFFEFCGASSGILLSTDVAARGLDIPAVDWIVQFDPPDEPKAYIHRV-GRTARAGGRGRALLFL 511
                 458***************************************9999888877777777765.7777776666666665 PP

>> TIGR01407  dinG_rel: putative DnaQ family exonuclease/DinG family helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.2   0.0   4.8e-05     0.033     264     287 ..     196     219 ..     182     225 .. 0.87
   2 ?   -1.0   0.0      0.11        78     444     456 ..     310     322 ..     292     474 .. 0.50

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 4.8e-05
   TIGR01407 264 eekslIeAatGtGKtlgYLLpaly 287
                  +++l +A tG+GKtl++L+pa+ 
  MMETSP1137-20121227|7792_1 196 GQDVLAQAKTGSGKTLAFLIPAVE 219
                 5899*****************975 PP

  == domain 2    score: -1.0 bits;  conditional E-value: 0.11
   TIGR01407 444 liiDEahkledia 456
                 l++DEa ++++i 
  MMETSP1137-20121227|7792_1 310 LVVDEADRILEIG 322
                 5555555555542 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (686 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       168  (0.0409556); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.65u 0.14s 00:00:00.79 Elapsed: 00:00:00.79
# Mc/sec: 1146.13
//
Query:       MMETSP1137-20121227|7793_1  [L=600]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (600 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        78  (0.0190151); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.16s 00:00:00.55 Elapsed: 00:00:00.39
# Mc/sec: 2030.60
//
Query:       MMETSP1137-20121227|7794_1  [L=690]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (690 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        74  (0.01804); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.10s 00:00:00.52 Elapsed: 00:00:00.90
# Mc/sec: 1011.92
//
Query:       MMETSP1137-20121227|7795_1  [L=262]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (262 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       112  (0.0273038); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.15s 00:00:00.37 Elapsed: 00:00:00.44
# Mc/sec: 785.94
//
Query:       MMETSP1137-20121227|7796_1  [L=93]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (93 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        42  (0.0102389); expected 82.0 (0.02)
Passed bias filter:                       40  (0.00975134); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.31
# Mc/sec: 395.97
//
Query:       MMETSP1137-20121227|7798_1  [L=791]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (791 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        76  (0.0185275); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.26s 00:00:00.63 Elapsed: 00:00:00.66
# Mc/sec: 1581.87
//
Query:       MMETSP1137-20121227|7800_1  [L=54]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        41  (0.00999512); expected 82.0 (0.02)
Passed bias filter:                       41  (0.00999512); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.13s 00:00:00.27 Elapsed: 00:00:00.32
# Mc/sec: 222.73
//
Query:       MMETSP1137-20121227|7801_1  [L=257]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.8e-16   55.5   0.0    5.6e-09   33.2   0.0    2.1  2  TIGR02037 degP_htrA_DO: peptidase Do
    1.2e-08   32.1   0.0    0.00038   17.2   0.0    2.1  2  TIGR00054 TIGR00054: RIP metalloprotease RseP
    3.1e-06   24.8   0.0      0.013   12.9   0.0    2.1  2  TIGR01713 typeII_sec_gspC: general secretion pathway protein C
    3.3e-06   24.3   0.0      0.027   11.4   0.0    2.1  2  TIGR02038 protease_degS: periplasmic serine peptidase DegS
    6.6e-05   19.9   0.0       0.05   10.5   0.0    2.1  2  TIGR00225 prc: C-terminal processing peptidase
     0.0022   14.9   0.0       0.71    6.6   0.0    2.4  2  TIGR02860 spore_IV_B: stage IV sporulation protein B


Domain annotation for each model (and alignments):
>> TIGR02037  degP_htrA_DO: peptidase Do
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.2   0.0   8.2e-12   5.6e-09     253     316 ..      20      83 ..       7      94 .. 0.92
   2 !   20.5   0.0   5.9e-08     4e-05     258     317 ..     117     176 ..      99     225 .. 0.88

  Alignments for each domain:
  == domain 1    score: 33.2 bits;  conditional E-value: 8.2e-12
   TIGR02037 253 lglekakGalvaevlkgspAekaGlkaGDvilkvngkkiksaadlreaigtlkpgkkvklkilR 316
                  g++k++  l+ +v+++s+Ae+aGl+ GD++  +ngk+++   +l++ +++++  + + l+i+R
  MMETSP1137-20121227|7801_1  20 AGVSKHNENLILTVASESAAERAGLQPGDIVNTFNGKDLSAEWNLPRVLSECTESQVAVLNITR 83 
                 578888999****************************************************999 PP

  == domain 2    score: 20.5 bits;  conditional E-value: 5.9e-08
   TIGR02037 258 akGalvaevlkgspAekaGlkaGDvilkvngkkiksaadlreaigtlkpgkkvklkilRk 317
                   G+ v e+++gspAe+aGl  GDv l+ +g +++    l++ i +  + +  ++ ++R 
  MMETSP1137-20121227|7801_1 117 LLGSRVLEITPGSPAETAGLLPGDVTLAADGIPLTPEYTLKQVIEKRVMAEWTTILLIRR 176
                 4588899*************************************9988888877777775 PP

>> TIGR00054  TIGR00054: RIP metalloprotease RseP
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.0   5.6e-07   0.00038     200     254 ..      24      78 ..      15      91 .. 0.87
   2 !   12.7   0.0   1.3e-05    0.0091     206     247 ..     122     163 ..      94     184 .. 0.87

  Alignments for each domain:
  == domain 1    score: 17.2 bits;  conditional E-value: 5.6e-07
   TIGR00054 200 pkielvlsdvvdnspaekaGlkeGDkilkidgeklkswrdlvklvkenpekslei 254
                  ++e  + +v + s+ae+aGl++GD +   +g+ l    +l  ++ e  e ++++
  MMETSP1137-20121227|7801_1  24 KHNENLILTVASESAAERAGLQPGDIVNTFNGKDLSAEWNLPRVLSECTESQVAV 78 
                 568999*****************************99999999998877777665 PP

  == domain 2    score: 12.7 bits;  conditional E-value: 1.3e-05
   TIGR00054 206 lsdvvdnspaekaGlkeGDkilkidgeklkswrdlvklvken 247
                 + ++++ spae aGl +GD  l  dg +l++  +l +++++ 
  MMETSP1137-20121227|7801_1 122 VLEITPGSPAETAGLLPGDVTLAADGIPLTPEYTLKQVIEKR 163
                 67899******************************9999874 PP

>> TIGR01713  typeII_sec_gspC: general secretion pathway protein C
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.9   0.0   1.9e-05     0.013     203     248 ..      38      83 ..      32      85 .. 0.92
   2 !   10.0   0.0   0.00015       0.1     166     242 ..      91     171 ..      84     185 .. 0.78

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 1.9e-05
   TIGR01713 203 lFekvgLqdgDiavalNgldlrdeeeakqvlqslaeetelkltveR 248
                 + e+ gLq+gDi+   Ng dl  e +  +vl+   e + + l++ R
  MMETSP1137-20121227|7801_1  38 AAERAGLQPGDIVNTFNGKDLSAEWNLPRVLSECTESQVAVLNITR 83 
                 56899*********************************99999988 PP

  == domain 2    score: 10.0 bits;  conditional E-value: 0.00015
   TIGR01713 166 eelakep.qklfdyvrlspvkkdd.kleGyrlnpgkdpslFekvgLqdgDiavalNgldlrdeeeakqvlqs..laeetel 242
                 ++l+++p   l+  ++ls  kk + kl G r+    ++s  e+ gL +gD+ +a  g+ l+ e   kqv+++  +ae t +
  MMETSP1137-20121227|7801_1  91 NDLKEQPtRLLSVKLKLSANKKTGlKLLGSRVLEITPGSPAETAGLLPGDVTLAADGIPLTPEYTLKQVIEKrvMAEWTTI 171
                 6788889555667899998876554*******9999999******************************985325554444 PP

>> TIGR02038  protease_degS: periplasmic serine peptidase DegS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.9   0.0   5.7e-05     0.039     272     335 ..      20      83 ..       4      89 .. 0.83
   2 !   11.4   0.0     4e-05     0.027     276     324 ..     116     164 ..     102     180 .. 0.75

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 5.7e-05
   TIGR02038 272 lgledlrgivvtevdPngPaaragllvrdvilkldnkevisaeelmdrvaelrPgskvlvtvlr 335
                  g+ + +  +++ v  ++ a ragl++ d++  +++k+  +  +l   ++e + +++  + + r
  MMETSP1137-20121227|7801_1  20 AGVSKHNENLILTVASESAAERAGLQPGDIVNTFNGKDLSAEWNLPRVLSECTESQVAVLNITR 83 
                 5666666778999**************************9999999999998888777776665 PP

  == domain 2    score: 11.4 bits;  conditional E-value: 4e-05
   TIGR02038 276 dlrgivvtevdPngPaaragllvrdvilkldnkevisaeelmdrvaelr 324
                 +l g  v+e+ P +Pa  agll+ dv l  d+ + +   +l + + +  
  MMETSP1137-20121227|7801_1 116 KLLGSRVLEITPGSPAETAGLLPGDVTLAADGIPLTPEYTLKQVIEKRV 164
                 46677899***********************999887766666655444 PP

>> TIGR00225  prc: C-terminal processing peptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.5   0.0   7.3e-05      0.05      54      99 ..      19      64 ..      11     115 .. 0.81
   2 !    7.3   0.0   0.00066      0.45      66     103 ..     122     160 ..     114     166 .. 0.79

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 7.3e-05
   TIGR00225 54 GiqvqmeddeivivsplegsPAekagikpgDkIikvdgksva.gmel 99
                G+ v ++++  +i ++  +s Ae+ag++pgD +   +gk+    ++l
  MMETSP1137-20121227|7801_1 19 GAGVSKHNE-NLILTVASESAAERAGLQPGDIVNTFNGKDLSaEWNL 64
                566655555.46889999*********************86414665 PP

  == domain 2    score: 7.3 bits;  conditional E-value: 0.00066
   TIGR00225  66 ivsplegsPAekagikpgDkIikvdgks.vagmelddav 103
                 + ++  gsPAe ag+ pgD  ++ dg + +    l +++
  MMETSP1137-20121227|7801_1 122 VLEITPGSPAETAGLLPGDVTLAADGIPlTPEYTLKQVI 160
                 566789**************9999997513345555555 PP

>> TIGR02860  spore_IV_B: stage IV sporulation protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.6   0.0     0.001      0.71     123     173 ..      36      87 ..      30      99 .. 0.82
   2 !    5.9   0.0    0.0017       1.1     124     169 ..     129     176 ..     101     184 .. 0.78

  Alignments for each domain:
  == domain 1    score: 6.6 bits;  conditional E-value: 0.001
   TIGR02860 123 esPaeeagiqvGDlilkvngekikeeedvaklineaggeklk.ltikRkkkk 173
                 es ae+ag+q GD++   ng+++  e ++ ++++e  + ++  l+i R  + 
  MMETSP1137-20121227|7801_1  36 ESAAERAGLQPGDIVNTFNGKDLSAEWNLPRVLSECTESQVAvLNITRPLAA 87 
                 57899***************************99999666541677776555 PP

  == domain 2    score: 5.9 bits;  conditional E-value: 0.0017
   TIGR02860 124 sPaeeagiqvGDlilkvngekikeeedvaklineag.geklk.ltikR 169
                 sPae+ag+  GD+ l+ +g ++  e  ++++i++    e  + l i+R
  MMETSP1137-20121227|7801_1 129 SPAETAGLLPGDVTLAADGIPLTPEYTLKQVIEKRVmAEWTTiLLIRR 176
                 89*******************************988544444144455 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (257 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        96  (0.0234032); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.29u 0.17s 00:00:00.46 Elapsed: 00:00:00.38
# Mc/sec: 892.66
//
Query:       MMETSP1137-20121227|7802_1  [L=166]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.7e-12   42.1   0.0      1e-11   41.8   0.0    1.0  1  TIGR03591 polynuc_phos: polyribonucleotide nucleotidyltransferase
    1.2e-08   31.6   0.0    1.3e-08   31.5   0.0    1.1  1  TIGR02063 RNase_R: ribonuclease R
    1.3e-08   31.7   0.0    1.6e-08   31.3   0.0    1.1  1  TIGR00717 rpsA: ribosomal protein S1
      1e-07   28.6   0.0    1.2e-07   28.3   0.0    1.0  1  TIGR02696 pppGpp_PNP: guanosine pentaphosphate synthetase I/polyribonucleotide nucleotidyltransferase
    2.9e-06   23.7   0.0    3.4e-06   23.5   0.0    1.0  1  TIGR00358 3_prime_RNase: VacB and RNase II family 3'-5' exoribonucleases
    6.5e-05   20.4   0.1    8.5e-05   20.0   0.1    1.2  1  TIGR00448 rpoE: DNA-directed RNA polymerase


Domain annotation for each model (and alignments):
>> TIGR03591  polynuc_phos: polyribonucleotide nucleotidyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.8   0.0   1.5e-14     1e-11     608     687 ..      44     131 ..      29     133 .. 0.82

  Alignments for each domain:
  == domain 1    score: 41.8 bits;  conditional E-value: 1.5e-14
   TIGR03591 608 lieeitaevevgkvyegkvvkiadfgafvel.lpgkdglvhiSelaeervek..vedvlk.....egdevkvkvleidkkgrvklsrk 687
                  i+++ +e +vg+v++gk+vki++fg fv+l ++++ gl+hiS l++er+e+  ve +++     +g +v+v+vl+++ kg+ + s k
  MMETSP1137-20121227|7802_1  44 CIKQFREELQVGAVWSGKIVKIVNFGCFVSLgMEEHMGLIHISSLTKERLERedVEAYIEdnvgpIGSKVSVEVLSLEFKGNKRTSLK 131
                 6999**************************9677889***********99743355555422224799********999998877765 PP

>> TIGR02063  RNase_R: ribonuclease R
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.5   0.0   1.8e-11   1.3e-08     626     699 ..      52     121 ..      16     134 .. 0.79

  Alignments for each domain:
  == domain 1    score: 31.5 bits;  conditional E-value: 1.8e-11
   TIGR02063 626 ekiGeefegvissvtsfGlFveLeentieGLvhissLkddyyefdeknlalvGertgkvfrlGdevkvkvvevd 699
                  ++G++++g i+++++fG Fv L   +  GL+hissL+++  e ++ +  +     ++v  +G +v v+v + +
  MMETSP1137-20121227|7802_1  52 LQVGAVWSGKIVKIVNFGCFVSLGMEEHMGLIHISSLTKERLEREDVEAYIE----DNVGPIGSKVSVEVLSLE 121
                 49*************************************9998776665553....345589999999998776 PP

>> TIGR00717  rpsA: ribosomal protein S1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.3   0.0   2.4e-11   1.6e-08     342     441 ..      35     145 ..      28     153 .. 0.74

  Alignments for each domain:
  == domain 1    score: 31.3 bits;  conditional E-value: 2.4e-11
   TIGR00717 342 lKqvkanP..weefeekhpvGdkvkgkikkitdfgafvele.egidGliHlsDlsWekkkkeaekekkk......gdeieakvlkvdke.kkkisLgv.KqLtenPwekfa 441
                 l++   nP   ++f e+ +vG++  gki+ki +fg fv l+ e   GliH+s l  e+ ++e ++ +++      g +++++vl+++++ +k+ sL +   L+++  e+++
  MMETSP1137-20121227|7802_1  35 LQRRACNPvcIKQFREELQVGAVWSGKIVKIVNFGCFVSLGmEEHMGLIHISSLTKERLEREDVEAYIEdnvgpiGSKVSVEVLSLEFKgNKRTSLKLlEVLSQDSVEDIE 145
                 5555555522689*************************99734567**********9999999999987222222457999999999873466777641345566666655 PP

>> TIGR02696  pppGpp_PNP: guanosine pentaphosphate synthetase I/polyribonucleotide nucleotidyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.3   0.0   1.8e-10   1.2e-07     645     714 ..      51     124 ..      28     131 .. 0.78

  Alignments for each domain:
  == domain 1    score: 28.3 bits;  conditional E-value: 1.8e-10
   TIGR02696 645 lpevgerflgtvvkttafgafvsl.lpgkdgllhiseirkla.dgkrvek.ved.vlsvgekikveiadiddrg 714
                 + +vg  + g +vk + fg+fvsl +  + gl+his + k   + + ve+ +ed v  +g+k+ ve+  ++ +g
  MMETSP1137-20121227|7802_1  51 ELQVGAVWSGKIVKIVNFGCFVSLgMEEHMGLIHISSLTKERlEREDVEAyIEDnVGPIGSKVSVEVLSLEFKG 124
                 5589********************667889******9987541555677536661557*********9998777 PP

>> TIGR00358  3_prime_RNase: VacB and RNase II family 3'-5' exoribonucleases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.5   0.0   4.9e-09   3.4e-06     574     647 ..      53     122 ..      44     133 .. 0.84

  Alignments for each domain:
  == domain 1    score: 23.5 bits;  conditional E-value: 4.9e-09
   TIGR00358 574 kvgeeFegvissvtrfGlfvrldengidglikistlendyyvfdkeklaligkkegkvykigDrvevkleevkl 647
                 +vg+ ++g i+++ +fG fv l      gli+is+l+++ +  ++e++  +++ +  v  ig +v+v +  +++
  MMETSP1137-20121227|7802_1  53 QVGAVWSGKIVKIVNFGCFVSLGMEEHMGLIHISSLTKERL--EREDVEAYIEDN--VGPIGSKVSVEVLSLEF 122
                 89************************************965..666666677665..88899999998877765 PP

>> TIGR00448  rpoE: DNA-directed RNA polymerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   0.1   1.2e-07   8.5e-05      83     159 ..      56     130 ..      39     147 .. 0.73

  Alignments for each domain:
  == domain 1    score: 20.0 bits;  conditional E-value: 1.2e-07
   TIGR00448  83 eiveGevieivefGafvslGpld..dllhvsqvlddyvvydpkkealigketkkvldvgdkvrarivalslkerkpeks 159
                  +  G++++iv+fG fvslG+ +  +l+h+s ++ + +  + + ea+i  +      +g kv + + +l +k++k+ + 
  MMETSP1137-20121227|7802_1  56 AVWSGKIVKIVNFGCFVSLGMEEhmGLIHISSLTKERLERE-DVEAYIEDNV---GPIGSKVSVEVLSLEFKGNKRTSL 130
                 56789***************9763379********998754.4556665544...457888888888888888775444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (166 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       119  (0.0290102); expected 82.0 (0.02)
Passed bias filter:                      115  (0.0280351); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.20u 0.15s 00:00:00.35 Elapsed: 00:00:00.35
# Mc/sec: 626.01
//
Query:       MMETSP1137-20121227|7803_1  [L=524]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (524 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        89  (0.0216967); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.14s 00:00:00.49 Elapsed: 00:00:00.44
# Mc/sec: 1571.87
//
Query:       MMETSP1137-20121227|7804_1  [L=424]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.4e-81  271.3   0.0    9.2e-81  269.4   0.0    1.7  1  TIGR02638 lactal_redase: lactaldehyde reductase
    8.6e-48  160.7   1.5    1.7e-47  159.7   1.0    1.6  1  TIGR03405 Phn_Fe-ADH: phosphonate metabolism-associated iron-containing alcohol dehydrogenase


Domain annotation for each model (and alignments):
>> TIGR02638  lactal_redase: lactaldehyde reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  269.4   0.0   4.5e-84   9.2e-81       4     379 .]      21     411 ..      18     411 .. 0.93

  Alignments for each domain:
  == domain 1    score: 269.4 bits;  conditional E-value: 4.5e-84
   TIGR02638   4 lilnevsyfGaGaiedivkevkrrgfkkalvvtdkdliklgvvdkvlelldeaklayelfdevvpnPtvevvkeGlaafkes...............gadyliaiGGGspidtakaigiivnnPefadvvsleGvadtkkkavpiiaipttaGtaaevtinyvitdeekkrklvivdpkdiPavavvdaelmlslPksltaatGldalthaiegyitkgaweltdalelkaieliaralksavedgkdkeareelalgqyvaGmafsnvGlGlvhglahplgalydlPhGvanaillPivmefnaekagekyreiakamgvkteelseeeareaaveavktlskrvgiPeklselgvkee....diealaeaaladvCtggnPreataeeieely 379
                 + l+++   Ga a +++ + +++ ++++ l+vtd  ++k g+++ +  +l +  ++y +f++ vp+Pt+evv++G++a+kes                +d+++ iGGGsp+dtakai + +    ++d   l+ v  t   ++piiaipttaGt +evt  +v++d++  +k++ +    +P+ a+vd el ++ P++lta tGld+l ha+e+y+++ a   td  +++a++ i r+l  a +dg d+eare+l l+   aG+afsn+ + l+hg++ p+ga +++PhG++na+llP+v++f  + a+ +y+e a+amg  +++ s+++a+ + v+ ++ l +++ +P +l+e gv +      i  +a++a+a    + nP   + e++++ly
  MMETSP1137-20121227|7804_1  21 VLLPRILKIGAAASQELPAVLSQLKLSRPLIVTDAFMLKSGLLAPIEGALKKSGFSYSIFSGCVPDPTTEVVHAGIDAWKESapvgsspsdvlasgsRCDCVVGIGGGSPMDTAKAIAVATDC--VSDLSTLK-VPATPPIGLPIIAIPTTAGTGSEVTRVSVVIDSKSSEKMLWMGMGLMPSAALVDFELTMTKPPRLTADTGLDSLCHAMEAYVSRRANPYTDGHAMEAMRTIPRYLVRAYKDGTDREARERLMLAATQAGIAFSNASVTLIHGMSRPIGAHFHVPHGLSNAMLLPKVTAFSIPGAAPRYAECARAMGFASADDSDTRANMKLVDGLQLLLNELRVP-TLEEFGVDKTryfdAISLMADQAIASGSPANNPVVPSPEQLHKLY 411
                 678889999**********************************************************************98533333333333222259******************987765..58888876.889999****************************************************************************************************************************************************************************************************************9.69*****985333258889999***999999**999999999998 PP

>> TIGR03405  Phn_Fe-ADH: phosphonate metabolism-associated iron-containing alcohol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  159.7   1.0   8.4e-51   1.7e-47      77     291 ..     115     324 ..      23     391 .. 0.87

  Alignments for each domain:
  == domain 1    score: 159.7 bits;  conditional E-value: 8.4e-51
   TIGR03405  77 dedaidvvvalGGGsvidtakvlavelrrgefeellrlleadkdvavaaalplvaiPttaGtGsevtpwatvWdaekskkyslaldatyPeaaivdaelmlslPrettlstgldalshalesiWnvnanPvsrglaiqavkdiiealpevladlddlalrsdmalaalkaGlafsntktalahsisyeltlrhGvphGiaCsftlPlvlraalgv 291
                   +++d vv +GGGs +dtak++av       + +  l + + + ++   lp++aiPttaGtGsevt  + v d++ s+k+      + P aa+vd el+++ P+  t  tgld+l ha+e+   + anP ++g a++a++ i + l +  +d  d ++r+++ laa +aG+afsn+  +l h +s ++  +  vphG++ ++ lP v   ++  
  MMETSP1137-20121227|7804_1 115 SGSRCDCVVGIGGGSPMDTAKAIAVA-----TDCVSDLSTLKVPATPPIGLPIIAIPTTAGTGSEVTRVSVVIDSKSSEKMLWMGMGLMPSAALVDFELTMTKPPRLTADTGLDSLCHAMEAYVSRRANPYTDGHAMEAMRTIPRYLVRAYKDGTDREARERLMLAATQAGIAFSNASVTLIHGMSRPIGAHFHVPHGLSNAMLLPKVTAFSIPG 324
                 4568*********************9.....66677776777899*************************************99***************************************************************************************************************************98766544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (424 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       111  (0.02706); expected 82.0 (0.02)
Passed bias filter:                      106  (0.0258411); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.16s 00:00:00.54 Elapsed: 00:00:01.26
# Mc/sec: 444.15
//
Query:       MMETSP1137-20121227|7805_1  [L=306]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (306 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        68  (0.0165773); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.11s 00:00:00.36 Elapsed: 00:00:00.40
# Mc/sec: 1009.72
//
Query:       MMETSP1137-20121227|7806_1  [L=331]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (331 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        64  (0.0156021); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.13s 00:00:00.37 Elapsed: 00:00:00.44
# Mc/sec: 992.92
//
Query:       MMETSP1137-20121227|7807_1  [L=88]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (88 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        34  (0.00828864); expected 82.0 (0.02)
Passed bias filter:                       34  (0.00828864); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.27
# Mc/sec: 430.19
//
Query:       MMETSP1137-20121227|7808_1  [L=845]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        1.8    3.9  13.4       0.59    5.5   3.1    2.8  3  TIGR02169 SMC_prok_A: chromosome segregation protein SMC
        2.4    4.3   9.7        2.7    4.1   0.1    2.3  2  TIGR03185 DNA_S_dndD: DNA sulfur modification protein DndD


Domain annotation for each model (and alignments):
>> TIGR02169  SMC_prok_A: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.2    0.0016       3.4     458     505 ..      82     129 ..      71     153 .. 0.47
   2 ?    5.5   3.1   0.00029      0.59     823     908 ..     268     353 ..     223     379 .. 0.59
   3 ?   -0.3   0.0     0.017        34     735     780 ..     775     820 ..     755     840 .. 0.53

  Alignments for each domain:
  == domain 1    score: 3.0 bits;  conditional E-value: 0.0016
   TIGR02169 458 leqlkedlekaekelrklkeeleklekelselerelaeleaqakasee 505
                 le++  +l++ +++l  ++   e l+++l++le+ +a+++a a+ s+e
  MMETSP1137-20121227|7808_1  82 LEEVGRKLAERDQQLDMTTRVCEVLQRRLHDLEQSVAKADADASESQE 129
                 222222223333333333333333333333333333333333322222 PP

  == domain 2    score: 5.5 bits;  conditional E-value: 0.00029
   TIGR02169 823 nklelekelleeeiqelqeeieeleeqkkeiekeieelkakleeleeeleeleaavreLeeelkdLkkereeleaelrelekkkee 908
                  ++el +++++++++++ +  + + + +++ +++++     l+++++  +++ aa+++ ++++  L +e ee++  l+e+++++++
  MMETSP1137-20121227|7808_1 268 RERELLEKSADDARAQMAQLAASVAAAQASAQAALDVPSELLQQISAWEKQQSAAEADWRQRQIRLYAEFEERKRRLQEAQQHQRK 353
                 22233333344444444444444444455555555555555555555566666666666666666666666666666665554433 PP

  == domain 3    score: -0.3 bits;  conditional E-value: 0.017
   TIGR02169 735 klkerleeleeklseleeeleekkeelkeleaeieeleeklaklke 780
                  ++  +e +e++ls  +   ++k +el +l a +ee++++l +++ 
  MMETSP1137-20121227|7808_1 775 GVRSLVETIEARLSDASTGGTAKVSELSSLYATLEEQNRELGEINV 820
                 4444444444444444444444444444444444444444444432 PP

>> TIGR03185  DNA_S_dndD: DNA sulfur modification protein DndD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   0.1    0.0013       2.7     422     478 ..      74     130 ..      67     144 .. 0.77
   2 ?    2.1   3.5    0.0055        11     197     297 ..     270     368 ..     265     383 .. 0.74

  Alignments for each domain:
  == domain 1    score: 4.1 bits;  conditional E-value: 0.0013
   TIGR03185 422 kvaelleeleeaeeevakseveieektekleelkeaieelrkel.kektkqkedaeel 478
                  +++l+++lee  +++a++  +++ +t+  e l++++++l + + k       +++e+
  MMETSP1137-20121227|7808_1  74 VMSTLFKTLEEVGRKLAERDQQLDMTTRVCEVLQRRLHDLEQSVaK-ADADASESQEA 130
                 5789999999999999999999999999999999999999999852.33333333333 PP

  == domain 2    score: 2.1 bits;  conditional E-value: 0.0055
   TIGR03185 197 rrkkeeleseieseiealeaelkeqeekievlaqeiaalrkeleeaerkleslekkfeseGgelaeereelerqqkeleaklkavraelrelaadl.lPLll 297
                 r+  e+  ++  +++ +l a++++ +   + + +   +l ++++  e++++ +e + ++   +l++e ee +r+++e+++++   r++lre  +++  PL+ 
  MMETSP1137-20121227|7808_1 270 RELLEKSADDARAQMAQLAASVAAAQASAQAALDVPSELLQQISAWEKQQSAAEADWRQRQIRLYAEFEERKRRLQEAQQHQ---RKKLRESCDEAlCPLYT 368
                 4555666677888999999999999999999999999999999999999999999999999999998888777777666654...44455444444367776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (845 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       234  (0.0570453); expected 82.0 (0.02)
Passed bias filter:                      123  (0.0299854); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.65u 0.20s 00:00:00.85 Elapsed: 00:00:00.67
# Mc/sec: 1664.64
//
Query:       MMETSP1137-20121227|7809_1  [L=300]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (300 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        60  (0.014627); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.16s 00:00:00.38 Elapsed: 00:00:00.31
# Mc/sec: 1277.31
//
Query:       MMETSP1137-20121227|7810_1  [L=204]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (204 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        68  (0.0165773); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.16s 00:00:00.35 Elapsed: 00:00:00.32
# Mc/sec: 841.43
//
Query:       MMETSP1137-20121227|7811_1  [L=31]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (31 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        33  (0.00804486); expected 82.0 (0.02)
Passed bias filter:                       33  (0.00804486); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.13s 00:00:00.23 Elapsed: 00:00:00.22
# Mc/sec: 185.98
//
Query:       MMETSP1137-20121227|7812_1  [L=102]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (102 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       101  (0.0246221); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.16s 00:00:00.31 Elapsed: 00:00:00.41
# Mc/sec: 328.36
//
Query:       MMETSP1137-20121227|7814_1  [L=286]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (286 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       212  (0.0516821); expected 82.0 (0.02)
Passed bias filter:                      102  (0.0248659); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.14s 00:00:00.37 Elapsed: 00:00:00.39
# Mc/sec: 967.92
//
Query:       MMETSP1137-20121227|7815_1  [L=562]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   6.1e-214  709.6   0.0   7.4e-214  709.3   0.0    1.0  1  TIGR00224 pckA: phosphoenolpyruvate carboxykinase (ATP)


Domain annotation for each model (and alignments):
>> TIGR00224  pckA: phosphoenolpyruvate carboxykinase (ATP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  709.3   0.0  1.8e-217  7.4e-214      15     531 ..      43     558 ..      30     559 .. 0.98

  Alignments for each domain:
  == domain 1    score: 709.3 bits;  conditional E-value: 1.8e-217
   TIGR00224  15 iddvkevrynasaallyeeelkeekg.vltstGavavdtGiftGrspkdkyiveeettkdkiwwgdvnkplseetweslkekvtdylkerdrlfvvdafaGadekyrlkvrvvtevayqalfvknllirpteeelktfeepdfvvlnaakvkanlkeqglnsenfvavnlkerelligGteyaGemkkgifsvmnyllplkdvlslhcsanvGekGdvalffGlsGtGkttlsadpkrkliGddehgwddeGvfnieGGcyaktiklseekepeifnairfdsvlenvvvdedsrevdyddssktentrvaypiyyidnivkpvlaaghatkvilltadafGvlppvskltkeqvkyhflsGytsklaGterGvtepeptfsacfGaaflalhptqyaevlvkklqeagaeaylvntGwtGssyvtGkrislkdtraiidaildGslenaeletlpifnlaiptkvpGvdaeildprntyadkekykekaeelanlfvenfkk.yadragaallaaGpk 531
                 i + +e+ ynas  + +ee l++e g +ltstGa+ v++G++ Grspkdk++v+e+t+ dk+wwg vn pl+++++ +++e+++dyl++r+rlfvvda+aG+d+ yr++vr+++e+ay+alf++ +l++pt eelktf +p+ +++na+ ++an    g+ s  ++ + l + e++i+G++yaGemkkg+ ++m y +pl++vl lh+s n+G +Gdv+lffGlsGtGkttlsadp r l+Gddeh w d+GvfnieGGcyak+  ls + epei+ airf++v+en vv  d+r  dydd ++tentr+ayp++yi+n++ p++a   +++villt+d fGvlpp+sklt++qv yhfl Gytsk+aGte G+ +  + fsac+G++fl  hp++yae+l+ +l++aga+a+l+ntGw G +   Gkr++lk+trai+dai+ G+l ++++ + p fnl  pt+ pGv++++ldp+ ++adk++y ++a++la+lf +nfkk yad++++++la+Gp+
  MMETSP1137-20121227|7815_1  43 I-NETEIIYNASPSVYVEEALRNEPGsMLTSTGALSVSSGAKHGRSPKDKRVVREPTSEDKVWWGGVNIPLEQNSFMINRERAIDYLNTRKRLFVVDAWAGWDPTYRIAVRIICERAYHALFMHTMLVQPTAEELKTF-KPEVTIMNAGCFPANRYVAGMTSSCTIDLHLGRGEVVILGSQYAGEMKKGVLTLMMYHMPLRGVLPLHSSCNQGPNGDVTLFFGLSGTGKTTLSADPLRSLLGDDEHVWTDNGVFNIEGGCYAKCAYLSPKSEPEIHAAIRFGAVVENCVVAADTRMPDYDDLTITENTRCAYPLEYIPNAKLPATAPVQPSNVILLTCDGFGVLPPISKLTRHQVIYHFLNGYTSKMAGTEVGIKSAVACFSACYGEPFLVWHPMKYAEMLADRLEAAGAQAWLLNTGWLG-GAEKGKRCPLKYTRAILDAIHSGELIKSDVRECPPFNLFYPTTCPGVPDAVLDPHTSWADKADYIKQANHLAGLFRDNFKKqYADKSTPEVLAGGPE 558
                 4.4479***************99865389*************************************************************************************************************.******************************************************************************************************************************************************************************************************************************************************************************************.7789***************************************************************************8659*************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (562 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       144  (0.0351048); expected 82.0 (0.02)
Passed bias filter:                      144  (0.0351048); expected 82.0 (0.02)
Passed Vit filter:                        39  (0.00950756); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.19s 00:00:00.65 Elapsed: 00:00:00.66
# Mc/sec: 1123.91
//
Query:       MMETSP1137-20121227|7816_1  [L=164]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (164 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        78  (0.0190151); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.13s 00:00:00.30 Elapsed: 00:00:00.50
# Mc/sec: 432.92
//
Query:       MMETSP1137-20121227|7817_1  [L=226]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (226 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        58  (0.0141394); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.13s 00:00:00.32 Elapsed: 00:00:00.31
# Mc/sec: 962.24
//
Query:       MMETSP1137-20121227|7818_1  [L=235]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (235 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       170  (0.0414432); expected 82.0 (0.02)
Passed bias filter:                      114  (0.0277913); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.16s 00:00:00.36 Elapsed: 00:00:00.36
# Mc/sec: 861.60
//
Query:       MMETSP1137-20121227|7819_1  [L=300]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (300 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       259  (0.0631399); expected 82.0 (0.02)
Passed bias filter:                      111  (0.02706); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.14s 00:00:00.40 Elapsed: 00:00:00.38
# Mc/sec: 1042.02
//
Query:       MMETSP1137-20121227|7820_1  [L=135]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (135 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        68  (0.0165773); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.16s 00:00:00.32 Elapsed: 00:00:00.30
# Mc/sec: 593.95
//
Query:       MMETSP1137-20121227|7820_2  [L=116]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (116 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        46  (0.011214); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.13s 00:00:00.30 Elapsed: 00:00:00.46
# Mc/sec: 332.84
//
Query:       MMETSP1137-20121227|7821_1  [L=329]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      2e-25   87.4   0.0    2.8e-25   86.9   0.0    1.2  1  TIGR01963 PHB_DH: 3-hydroxybutyrate dehydrogenase
      2e-22   77.9   0.0    3.7e-22   77.0   0.0    1.4  1  TIGR01830 3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase
    2.3e-16   58.0   0.0    3.6e-16   57.4   0.0    1.2  1  TIGR01829 AcAcCoA_reduct: acetoacetyl-CoA reductase
      6e-14   50.0   0.0    9.4e-14   49.3   0.0    1.2  1  TIGR01832 kduD: 2-deoxy-D-gluconate 3-dehydrogenase
    7.3e-12   43.1   0.0    1.2e-11   42.4   0.0    1.3  1  TIGR02415 23BDH: acetoin reductases
    7.2e-11   39.0   0.0    9.8e-11   38.5   0.0    1.1  1  TIGR02632 RhaD_aldol-ADH: rhamnulose-1-phosphate aldolase/alcohol dehydrogenase
    2.3e-10   38.1   0.1    3.4e-10   37.5   0.0    1.2  1  TIGR03206 benzo_BadH: 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase
    7.2e-07   26.7   0.1    1.7e-06   25.5   0.0    1.5  1  TIGR03971 SDR_subfam_1: oxidoreductase, SDR family
    1.6e-06   25.5   0.3      1e-05   22.9   0.2    1.9  1  TIGR01831 fabG_rel: putative 3-oxoacyl-(acyl-carrier-protein) reductase
    9.1e-05   19.8   0.0    0.00013   19.3   0.0    1.2  1  TIGR01500 sepiapter_red: sepiapterin reductase
    0.00011   19.2   0.4      0.004   14.1   0.1    2.3  2  TIGR02685 pter_reduc_Leis: pteridine reductase
     0.0032   14.6   2.1      0.023   11.8   1.4    2.0  1  TIGR03325 BphB_TodD: cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase
  ------ inclusion threshold ------
      0.012   13.0   0.1      0.066   10.5   0.0    1.9  2  TIGR01289 LPOR: light-dependent protochlorophyllide reductase


Domain annotation for each model (and alignments):
>> TIGR01963  PHB_DH: 3-hydroxybutyrate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.9   0.0   8.9e-28   2.8e-25       1     196 [.       4     215 ..       4     226 .. 0.89

  Alignments for each domain:
  == domain 1    score: 86.9 bits;  conditional E-value: 8.9e-28
   TIGR01963   1 kkvalvtGaasGiglaiakelaaaGakvvvndle.....eeaaeaaakeleeaggevlalkadvtkeeeiadlieav.aaefgsldiLvnnA..Giqhvap.........ieefptekfekiiavnltsafhtiraalpimkkqgwGriiniasvhglvasafKsaYvaaKHglvGltKvlAlEvAetgitanaicPgyvrtpLvekqiadqa 196
                 k+valvtGa+ Gigl+ia+++ ++G +v ++  +       ++eaa++++e+ gge++ ++ d +kee+i  l +++ aae  ++d+Lvnn   G+ ++a+           e+p+  f++i ++ lt+ ++++ +  + m  +++G i++++s+ gl  + f s+Y + K +l  l++ lA E   tg+ + +i Pg v t   ++  +d+a
  MMETSP1137-20121227|7821_1   4 KRVALVTGASKGIGLGIARAFGEKGYRVHISASGrtpsgPGSLEAAKEAIESVGGECVPHVCDHSKEEAIGALFDEIlAAEPDGIDVLVNNVygGVDFIAKsmksgstfkFWEHPPSVFSQINQIGLTAHYVASVHYAKAMVPRKRGLIVQVSSAGGLL-YIFNSPYSTGKAALDRLSRDLAFELEGTGVGCVTIYPGMVATEKFQALASDKA 215
                 599************************99988775566667899***************************9998862678899*******555***998632222222245889******************************************97.679***************************************98887777766 PP

>> TIGR01830  3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.0   0.0   1.2e-24   3.7e-22       1     204 [.       7     225 ..       7     234 .. 0.84

  Alignments for each domain:
  == domain 1    score: 77.0 bits;  conditional E-value: 1.2e-24
   TIGR01830   1 alvtGasrgiGkaiakklakegakvviterske....ekaeelaeelkeagvkaaavkldvsdeeevkelveevee.elgeidilvnnAGitrDklllrmkeed...........wdevikvnLkgvfnvtkavlkkmikkrsGriinissvvgllGnagqanYaasKaGligltkslakElasrnitvnavaPGfietdmteklsekvkkkileqiplk 204
                 alvtGas+giG  ia+++ ++g++v i+ + ++     ++e+++e++++ g++++  ++d s+ee++ +l++e+ + e + id+lvnn     D ++  mk+             ++++ ++ L++ +  + + +k+m+ +++G i+++ss  gll   + + Y++ Ka l  l++ la El   ++ + ++ PG+++t+  ++l ++  + +l++  l 
  MMETSP1137-20121227|7821_1   7 ALVTGASKGIGLGIARAFGEKGYRVHISASGRTpsgpGSLEAAKEAIESVGGECVPHVCDHSKEEAIGALFDEILAaEPDGIDVLVNNVYGGVDFIAKSMKSGStfkfwehppsvFSQINQIGLTAHYVASVHYAKAMVPRKRGLIVQVSSAGGLLYIFN-SPYSTGKAALDRLSRDLAFELEGTGVGCVTIYPGMVATEKFQALASDKAAPWLSEDSLA 225
                 79************************99765431111578999******************************97625689*******87777777777775322222112222377888999*****************************99997765.78**************************************9999999888877766655 PP

>> TIGR01829  AcAcCoA_reduct: acetoacetyl-CoA reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.4   0.0   1.1e-18   3.6e-16       1     194 [.       5     213 ..       5     220 .. 0.81

  Alignments for each domain:
  == domain 1    score: 57.4 bits;  conditional E-value: 1.1e-18
   TIGR01829   1 rvalvtGglgGiGtaickrlakdGykvvanvapnee....rakewlqekevegfdvavvkadvssfeeakaavakveael.GpvdvlvnnaGitrdavfkkmtk....eqWe.......evidtnlnsvfnvtrpviegmlergfGriinissvnGlkGqfGqanysaakaGliGftkalaqegakkgvtvnviaPGyiatemvkavred 194
                 rvalvtG+++GiG  i++++ ++Gy+v  + ++ +     + ++ +++ e  g + +    d s+ e+  a ++++ a++   +dvlvnn     d + k m++    + We       ++ ++ l++ +       ++m+ r+ G i+++ss  Gl   f  + ys+ ka l  +++ la e   +gv   +i PG +ate  +a+  d
  MMETSP1137-20121227|7821_1   5 RVALVTGASKGIGLGIARAFGEKGYRVHISASGRTPsgpgSLEAAKEAIESVGGECVPHVCDHSKEEAIGALFDEILAAEpDGIDVLVNNVYGGVDFIAKSMKSgstfKFWEhppsvfsQINQIGLTAHYVASVHYAKAMVPRKRGLIVQVSSAGGLLYIF-NSPYSTGKAALDRLSRDLAFELEGTGVGCVTIYPGMVATEKFQALASD 213
                 8*************************97666654431111445566666777788889999**************98766267*******98888888888875222234642222111667788999999999999*******************98766.689*************************************99998766 PP

>> TIGR01832  kduD: 2-deoxy-D-gluconate 3-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.3   0.0     3e-16   9.4e-14       6     199 ..       5     215 ..       3     221 .. 0.78

  Alignments for each domain:
  == domain 1    score: 49.3 bits;  conditional E-value: 3e-16
   TIGR01832   6 kvalvtGantGlGqgiavglaeaGadi.vgvg.is.....elsetqekvealGrkflslkadladeeaakalvdeaveea.gkidilvnna..Gi..irredavefsekdwdd.......vlnvnlkavfllsqavakkllkqGrkgkiiniasllsfqGGirvpsytasksavaGltkllanewakkginvnaiaPGyletnntealradek 199
                 +valvtGa++G+G gia ++ e G  + ++++ ++     +l+ ++e++e++G +      d ++eea+ al de++++  + id+lvnn   G+  i ++     + k w++       + ++ l a ++ s + ak ++ +  +g i+ ++s   +   i  + y++ k a+  l++ la e+  +g+   +i PG ++t+  +al +d++
  MMETSP1137-20121227|7821_1   5 RVALVTGASKGIGLGIARAFGEKGYRVhISASgRTpsgpgSLEAAKEAIESVGGECVPHVCDHSKEEAIGALFDEILAAEpDGIDVLVNNVygGVdfIAKSMKSGSTFKFWEHppsvfsqINQIGLTAHYVASVHYAKAMVPRK-RGLIVQVSSAGGLLY-IFNSPYSTGKAALDRLSRDLAFELEGTGVGCVTIYPGMVATEKFQALASDKA 215
                 79**********************88744443232222225677899****************************98654179*******654542254444444444555542221111666778899999999999999987.999999988644332.45578******************************************99975 PP

>> TIGR02415  23BDH: acetoin reductases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.4   0.0   3.7e-14   1.2e-11       1     194 [.       5     213 ..       5     227 .. 0.77

  Alignments for each domain:
  == domain 1    score: 42.4 bits;  conditional E-value: 3.7e-14
   TIGR02415   1 kvalvtGaaqGiGkaiaerLakdGfavavadln.....eetaketakelkekgtkavavkldvsdkseveeaveqa.veklGeldvlvnna..Gvalvtpileite.....eelekly.nvnvkgvlfGiqaaaekfkkl..khkGkiinaasiagvegspelsaysstkfavrgltqtaakeLakkgitvnayaPGivktemreeidek 194
                 +valvtGa++GiG +ia+ + + G+ v +         + ++ ++++ +++ g++ v  + d s+ +++ ++ ++  +++  ++dvlvnn   Gv+++   +++++     e+   ++ ++n  g      a+++  k +  +++G i+   s ag   +   s ys+ k a+  l +  a eL   g+   +  PG+v te  + ++++
  MMETSP1137-20121227|7821_1   5 RVALVTGASKGIGLGIARAFGEKGYRVHISASGrtpsgPGSLEAAKEAIESVGGECVPHVCDHSKEEAIGALFDEIlAAEPDGIDVLVNNVygGVDFIAKSMKSGStfkfwEHPPSVFsQINQIGLTAHYVASVHYAKAMvpRKRGLIVQV-SSAGGLLYIFNSPYSTGKAALDRLSRDLAFELEGTGVGCVTIYPGMVATEKFQALASD 213
                 79***************************98765555556777788889************************9972467789*******5559*99865444443122223333455247777765555555444443322455777765.55677778899**************************************988877665 PP

>> TIGR02632  RhaD_aldol-ADH: rhamnulose-1-phosphate aldolase/alcohol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.5   0.0   3.1e-13   9.8e-11     414     599 ..       4     202 ..       2     215 .. 0.77

  Alignments for each domain:
  == domain 1    score: 38.5 bits;  conditional E-value: 3.1e-13
   TIGR02632 414 rrvalvtGgasGiGrevarrlvdeGahvvladldae....aaeavaaelvdkfGadkavalkldvtdeeavkaafaev.alayGGvdivvnna..Gi.avskpleete.leeWdl.......nldilatGyflvareaarllrkqglggnlvfiasknavvakknalaysaakaaeahlvrllaielaelgirvntvaPdav 599
                 +rvalvtG++ GiG  +ar + ++G  v +             + a+e ++  G +++v  + d  +eea+ a f+e+ a +  G+d++vnn   G+ +++k +++ +  + W+          +i  t +++ + + a+ +  ++  g +v ++s  +++   n + ys+ kaa   l r la el  +g+   t+ P  v
  MMETSP1137-20121227|7821_1   4 KRVALVTGASKGIGLGIARAFGEKGYRVHISASGRTpsgpGSLEAAKEAIESVG-GECVPHVCDHSKEEAIGALFDEIlAAEPDGIDVLVNNVygGVdFIAKSMKSGStFKFWEHppsvfsqINQIGLTAHYVASVHYAKAMVPRK-RGLIVQVSSAGGLLYIFN-SPYSTGKAALDRLSRDLAFELEGTGVGCVTIYPGMV 202
                 69***********************99988766544112223455556666777.56777889*************97366789*******9544774567776655437889862222111235667889999998888887665.4679*******9998766.68**************************99999877 PP

>> TIGR03206  benzo_BadH: 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.5   0.0   1.1e-12   3.4e-10       4     198 ..       5     215 ..       3     225 .. 0.77

  Alignments for each domain:
  == domain 1    score: 37.5 bits;  conditional E-value: 1.1e-12
   TIGR03206   4 kvaivtgggggiggaicrrfaeegakvavldlnae.....aaekvaaairekggkaeavavditdrasvdaavaaaeea.lgpvdvlvnna..gwdvlkpflkteka..ewer.......liainltgalymhhavlkgmverkagrivniasdaarvgssgeavyaackgglvafsktlarelarhgitvnvvcpgptdtalledvkseae 198
                 +va+vtg + gig  i r f+e+g +v +    +      + e   +ai + gg++    +d ++++++ a    +  a    +dvlvnn   g d + + +k+  +   we+       +  i lt         +k mv rk+g iv+++s  +      ++ y++ k  l  +s+ la el   g+    + pg   t  ++ ++s+ +
  MMETSP1137-20121227|7821_1   5 RVALVTGASKGIGLGIARAFGEKGYRVHISASGRTpsgpgSLEAAKEAIESVGGECVPHVCDHSKEEAIGALFDEILAAePDGIDVLVNNVygGVDFIAKSMKSGSTfkFWEHppsvfsqINQIGLTAHYVASVHYAKAMVPRKRGLIVQVSSA-GGLLYIFNSPYSTGKAALDRLSRDLAFELEGTGVGCVTIYPGMVATEKFQALASDKA 215
                 799************************998876642222145677789**************9999988877665544413569******655999998777654431146643322000555555554444445689************9875.5556678899************************************99998887765 PP

>> TIGR03971  SDR_subfam_1: oxidoreductase, SDR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.5   0.0   5.4e-09   1.7e-06       4     205 ..       5     208 ..       3     228 .. 0.80

  Alignments for each domain:
  == domain 1    score: 25.5 bits;  conditional E-value: 5.4e-09
   TIGR03971   4 kvalitGaarGqGraeavrlaaeGadiiaidlceplsdvvtypaatredldetaklvealGrkvlarkadvrkleelravveegve.efGrldvvvana..Gv......lsygra...felseeqWdtvldvnlkGvWktvkavvPalierknGGsiiivssvaglkalpglahyaaakhGlvgltktlanelaeygirvnsihPtsvdtamie 205
                 +val+tGa++G G   a ++ ++G  +    + ++  +++    +    l+ + +++e++G   + +++d  k e++ a  +e ++ e   +dv+v+n   Gv      +  g++   +e  +  + ++ ++ l+  + +      a++ rk  G i+ vss+ gl  + +++ y++ k  l  l + la el   g+   +i P  v+t+  +
  MMETSP1137-20121227|7821_1   5 RVALVTGASKGIGLGIARAFGEKGYRV---HISASG-RTP----SGPGSLEAAKEAIESVGGECVPHVCDHSKEEAIGALFDEILAaEPDGIDVLVNNVygGVdfiaksMKSGSTfkfWEHPPSVFSQINQIGLTAHYVASVHYAKAMVPRK-RGLIVQVSSAGGLLYI-FNSPYSTGKAALDRLSRDLAFELEGTGVGCVTIYPGMVATEKFQ 208
                 8********************999865...444443.555....45567999999**********************999999886256789****99553662222212233332226777777778888888888877777778999999.7899****99999865.7899************************************9776 PP

>> TIGR01831  fabG_rel: putative 3-oxoacyl-(acyl-carrier-protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.9   0.2   3.2e-08     1e-05       2     191 ..       8     211 ..       7     220 .. 0.76

  Alignments for each domain:
  == domain 1    score: 22.9 bits;  conditional E-value: 3.2e-08
   TIGR01831   2 lvtgasrgigraialklaadgfeiavhyr....sdradaeesvaairaqggnarllkfdvadrvavrevlea.........diaehgayygvvlnagiar.daafpalse..edwdavietnldgfynvihplvmpmirarkggriitlasvsgvmgnrgqvnysaakagligatkalavelakrkitvnciapglidtemvaeve 191
                 lvtgas+gig  ia  +  +g+ + +       s+  + e++ +ai++ gg++     d ++ +a+ +++++         d+  +  y gv   a   +  ++f    +    +  + + +l + y         m+  rk g i+ ++s  g++    +  ys+ ka l   ++ la el    +    i pg++ te  +   
  MMETSP1137-20121227|7821_1   8 LVTGASKGIGLGIARAFGEKGYRVHISASgrtpSGPGSLEAAKEAIESVGGECVPHVCDHSKEEAIGALFDEilaaepdgiDVLVNNVYGGVDFIAKSMKsGSTFKFWEHppSVFSQINQIGLTAHYVASVHYAKAMVP-RKRGLIVQVSSAGGLLYI-FNSPYSTGKAALDRLSRDLAFELEGTGVGCVTIYPGMVATEKFQALA 211
                 9**********************9987642112455567888999******9999999999999998776541111222224556777888876665444045554433311457778889999999877777778875.88899*********9865.5679**********************9999999*******9877665 PP

>> TIGR01500  sepiapter_red: sepiapterin reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.0     4e-07   0.00013       2     199 ..       6     205 ..       5     221 .. 0.72

  Alignments for each domain:
  == domain 1    score: 19.3 bits;  conditional E-value: 4e-07
   TIGR01500   2 lllvtGasrGfGrelaqelakrlkaegsvlvLlaRndea...LkeskaeieaevsalsvdlvsldleaakdvedllkaleesikkeeyerillinnaGtlgdvskrekelsDsknvqkyydsnvts...lvvltsellkklkel....qglektvvnlssLcaikpfkswalYCaskaaRdmffqvLaleek.edvkvLnYapGvlDtd 199
                 ++lvtGas+G+G  +a+ + +  k   + +  ++R   +   L  +k+ ie+ v +  v  v  d ++++ +  l+  +++  ++++ + +l+ n  G +  ++k +k  s +k+ ++     v+s    + lt++ +  ++ +    +    ++v +ss   +  +   + Y ++kaa d + + La e +   v  +   pG++ t+
  MMETSP1137-20121227|7821_1   6 VALVTGASKGIGLGIARAFGE--KGYRVHISASGRTPSGpgsLEAAKEAIES-VGGECVPHV-CDHSKEEAIGALFDEILAA-EPDGID-VLVNNVYGGVDFIAKSMKSGSTFKFWEHP--PSVFSqinQIGLTAHYVASVHYAkamvPRKRGLIVQVSSAGGLLYIF-NSPYSTGKAALDRLSRDLAFELEgTGVGCVTIYPGMVATE 205
                 79****************999..78888888888987643338888889998.777777666.4666666577777766653.455554.4555668***********88888877654..334441115567777776665442223466679******99998765.489*****************99767777777778888776 PP

>> TIGR02685  pter_reduc_Leis: pteridine reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.1   1.3e-05     0.004       3      31 ..       6      34 ..       4      97 .. 0.82
   2 ?    3.0   0.0     0.031       9.8     172     205 ..     168     201 ..     152     214 .. 0.90

  Alignments for each domain:
  == domain 1    score: 14.1 bits;  conditional E-value: 1.3e-05
   TIGR02685  3 aalvtGaakriGrsiavklhqeGyrvvlh 31
                +alvtGa+k iG  ia ++ ++Gyrv + 
  MMETSP1137-20121227|7821_1  6 VALVTGASKGIGLGIARAFGEKGYRVHIS 34
                89***********************9875 PP

  == domain 2    score: 3.0 bits;  conditional E-value: 0.031
   TIGR02685 172 lytmakealeGltrsaalelaslqirvngvapGl 205
                  y+ +k al+ l+r  a+el   ++   ++ pG+
  MMETSP1137-20121227|7821_1 168 PYSTGKAALDRLSRDLAFELEGTGVGCVTIYPGM 201
                 5999********************9999999997 PP

>> TIGR03325  BphB_TodD: cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.8   1.4   7.2e-05     0.023       6     191 ..       5     206 ..       1     244 [. 0.68

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 7.2e-05
   TIGR03325   6 evvlvtggasglgralvdrfvaegarvavl..dksaagleeleaahgdkvvgvegdv..rllddhk.eavarcveaf.....gkldtlipna.giwdystalvdipd.....drideafdevfeinvkgyllavkaalpalvasrgsviftvsnagfypngggalytaakhavvglvkelayel.apyvrvngvapgglstdl 191
                 +v+lvtg + g+g  +   f  +g rv +    ++  g   leaa+ +++ +v g+    + d+ k ea+    +++       +d+l++n+ g  d+ ++ ++        ++    f ++ +i + ++ +a      a+v  + + i  vs ag       + y+++k a+  l ++la+el +  v    + pg ++t+ 
  MMETSP1137-20121227|7821_1   5 RVALVTGASKGIGLGIARAFGEKGYRVHISasGRTPSGPGSLEAAK-EAIESVGGECvpHVCDHSKeEAIGALFDEIlaaepDGIDVLVNNVyGGVDFIAKSMKSGStfkfwEHPPSVFSQINQIGLTAHYVASVHYAKAMVPRKRGLIVQVSSAGGLLYIFNSPYSTGKAALDRLSRDLAFELeGTGVGCVTIYPGMVATEK 206
                 6899999999999999999999999987751156677778888765.4566666664113444333145443333321111256999999976667777666654431112234456788999998887655555555677777777889999999888888899******************94456889999999998764 PP

>> TIGR01289  LPOR: light-dependent protochlorophyllide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   0.00021     0.066       3      32 ..       4      32 ..       2      58 .. 0.84
   2 ?   -0.1   0.0      0.36   1.1e+02     210     227 ..     188     205 ..     178     214 .. 0.86

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 0.00021
   TIGR01289  3 kptviitgassglglaaakalvekgkwhvv 32
                k  +++tgas g+gl  a+a+ ekg + v 
  MMETSP1137-20121227|7821_1  4 KRVALVTGASKGIGLGIARAFGEKG-YRVH 32
                77899********************.5553 PP

  == domain 2    score: -0.1 bits;  conditional E-value: 0.36
   TIGR01289 210 detgivfaslypgcvadt 227
                 + tg+   ++ypg va+ 
  MMETSP1137-20121227|7821_1 188 EGTGVGCVTIYPGMVATE 205
                 579999*********975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (329 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       124  (0.0302292); expected 82.0 (0.02)
Passed bias filter:                      120  (0.029254); expected 82.0 (0.02)
Passed Vit filter:                        26  (0.00633837); expected 4.1 (0.001)
Passed Fwd filter:                        13  (0.00316919); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.38u 0.16s 00:00:00.54 Elapsed: 00:00:00.46
# Mc/sec: 944.01
//
Query:       MMETSP1137-20121227|7822_1  [L=264]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.7e-29  100.9   7.5    2.2e-29  100.5   5.2    1.0  1  TIGR01171 rplB_bact: ribosomal protein L2


Domain annotation for each model (and alignments):
>> TIGR01171  rplB_bact: ribosomal protein L2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  100.5   5.2   5.4e-33   2.2e-29      40     247 ..      14     231 ..       6     249 .. 0.81

  Alignments for each domain:
  == domain 1    score: 100.5 bits;  conditional E-value: 5.4e-33
   TIGR01171  40 kGrnnrGritvrh.kggghkklyrvidfkrdkkeieakvasieydPnrsariaLllyadGekryil.....aPkglkvgdtvvsgeeadikvgnalplkniPvGttvhnielkpgkGgqlvrsaGtsaqilakeg..kyvllrlpsgevrkvekeCratiGevgnedhknvklGkaGrkrwl..Gvr...PtvrGvamnPvdhPhGGGegrtskgrkkPvt 247
                 + r+ rG + + h k      + r +d+  ++  i++ v+++ +dP r a +  ++++   k   +     a +g  +g+ ++ g++a + +gn lpl+++P Gt++ n+e ++g  g++++++G +aqi+ + +    + +rlpsg+ ++++++ ra++G v+      + l kaGr+ ++   +r   P+vrGvamnPv+hPhGGG+ ++ +g  +P t
  MMETSP1137-20121227|7822_1  14 GQRKGRGSVFTSHtKHRKGPGALRALDYAERNGYIRGVVRELVHDPGRGAPLVRVQFNSPYKYKKIneqwtATEGTYTGQFIYCGKRATLIPGNILPLESMPPGTVINNVEKQAGDKGKFAKTSGGFAQIIQHIEgaGKTRVRLPSGQKKTISSRARAAVGIVAGGGRIDKPLLKAGRAYHKyrVKRncwPKVRGVAMNPVEHPHGGGNHQH-IG--HPST 231
                 44566666644441334445689******************************999988766544412222678999*****************************************************99855357899**********************877777777777777644311333444******************9887.66..5655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (264 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        82  (0.0199902); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.21u 0.14s 00:00:00.35 Elapsed: 00:00:00.36
# Mc/sec: 967.92
//
Query:       MMETSP1137-20121227|7823_1  [L=487]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (487 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        88  (0.0214529); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.16s 00:00:00.48 Elapsed: 00:00:00.47
# Mc/sec: 1367.63
//
Query:       MMETSP1137-20121227|7824_1  [L=488]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (488 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       294  (0.0716724); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.15s 00:00:00.51 Elapsed: 00:00:00.55
# Mc/sec: 1171.10
//
Query:       MMETSP1137-20121227|7825_1  [L=963]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   1.5e-130  434.2   0.0   4.8e-129  429.3   0.0    2.0  1  TIGR00398 metG: methionine--tRNA ligase
    2.9e-31  106.1   0.4    2.1e-20   70.2   0.0    2.8  3  TIGR00422 valS: valine--tRNA ligase
    2.3e-28   96.7   0.0    1.1e-19   67.9   0.0    3.1  3  TIGR00392 ileS: isoleucine--tRNA ligase
    1.7e-20   71.1   0.0    2.7e-20   70.4   0.0    1.3  1  TIGR00399 metG_C_term: methionine--tRNA ligase, beta subunit
    6.4e-17   58.8   0.0      5e-09   32.6   0.0    2.2  2  TIGR00396 leuS_bact: leucine--tRNA ligase
    2.8e-12   44.3   0.0    3.1e-05   21.1   0.0    2.2  2  TIGR00435 cysS: cysteine--tRNA ligase
    4.7e-10   37.3   0.0    9.6e-10   36.3   0.0    1.5  1  TIGR02222 chap_CsaA: export-related chaperone CsaA
    5.3e-10   35.7   0.0    0.00012   18.1   0.0    2.1  2  TIGR00395 leuS_arch: leucine--tRNA ligase
      4e-07   26.4   0.1    5.9e-07   25.9   0.0    1.1  1  TIGR00472 pheT_bact: phenylalanine--tRNA ligase, beta subunit
    0.00031   17.5   0.0       0.24    7.9   0.0    2.3  2  TIGR03447 mycothiol_MshC: cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase


Domain annotation for each model (and alignments):
>> TIGR00398  metG: methionine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  429.3   0.0  1.2e-131  4.8e-129       1     504 [.     269     732 ..     269     745 .. 0.94

  Alignments for each domain:
  == domain 1    score: 429.3 bits;  conditional E-value: 1.2e-131
   TIGR00398   1 ilvTtalyYangkpHlGhllttilaDvlarykrlrGeevlfvtgtDehGtkielkAesegltPkelvdklaeefkklfkllnisfdrFirTtdeehkeivqkifekllenGyiyekeikglYcvecesflpdryvegecpkckeedargdqcekcgrllePlelieprcvvskakpelkeeehyFfrlskfekkleelikknpeskklasevknvlenflkegLkdlaitRdlvewGipvPkdpnkvvYVWldAligYisalseeknatekfkkywkekedaelihliGkdivrfHtiywPamllalelklpkqlvahgyltve.gkkmSkSkgnvvdpedllarygadilRYyllkevplekDldfsledfvervNaelvnklgNllnRtlgfikkyfegklksvkeaseedekllkkieealekidealekfefkkaleeilklvsegnklideekPwelakeeekekellavllelirvlsillkpilpklsekilkllnle 504
                 ++vTta+ Yang+pH+Gh+++++  Dvlary+r  G  v+f+tg DehG+ki+ +A++ +l P +l+d+ +++f+ l  +l++ +d + rT +++hk+ ++ +++k  ++G+iy + ++g+Y v++e+f++++         +++    dq                   vs++     ee +yFf+lsk+++++ ++i+ +p + +++ ++++vle  l+  L+dl+i+R++++wGipvP dp++v+YVW+dAl +Yisal++  +  e+f+ +w++      +h+iGkdi+ fH+++wPa+l++lel+lp+ ++ahg++    g+kmSkS+gnvvdp ++la+++ d +RY++++ +pl+ Dl fs++++  r Nael+ ++gNl+nR l++ +ky+ g ++++k+      + + +i++  e+ ++a+ +f +++a+e  +      nk++ +++Pw+++ ++ k + ++ +lle +++l+ +++p+l++ ++ +++ ln+ 
  MMETSP1137-20121227|7825_1 269 FYVTTAINYANGSPHMGHAYESVCTDVLARYHRAYGRAVFFLTGADEHGQKIADTAREANLAPIQLCDRSVSQFHALNTALGVANDGYVRTSSDHHKAGATAVWKKAASKGDIYLGVYSGWYNVREETFVTETD-AAA---ADYM----DQ-------------------VSGKPLKKMEEASYFFKLSKYQQQIIAHIETHPAFVQPEVRRNEVLE-RLRVPLQDLSISRTTFSWGIPVPDDPQHVMYVWIDALSNYISALGYPDG--EAFRAFWPAA-----VHVIGKDITWFHCVIWPALLMSLELPLPTTVLAHGFVHGAdGRKMSKSLGNVVDPLEVLAKFDLDSFRYFVVRDAPLGGDLTFSEDALAIRHNAELIGTFGNLVNRALALCEKYCAGCVPAAKA------DRVLDIDALREATERAYGSFALHSAMEMAIGAFGTVNKYVTDTEPWHMKADDPKRNVVVRTLLEHVYALTHFVQPVLVRGASAVFSKLNTP 732
                 69*********************************************************************************************************************************992.222...2222....22...................3333344467899****************************999887.56677********************************************..9******998.....*************************************9654********************************************************************************999......34668999********************************************99999******************************9986 PP

>> TIGR00422  valS: valine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.0   0.0   1.7e-11   7.1e-09      35      83 ..     269     317 ..     261     369 .. 0.91
   2 ?    0.1   0.0     0.079        32     347     414 ..     413     481 ..     408     483 .. 0.82
   3 !   70.2   0.0   5.1e-23   2.1e-20     449     572 ..     486     607 ..     480     614 .. 0.90

  Alignments for each domain:
  == domain 1    score: 32.0 bits;  conditional E-value: 1.7e-11
   TIGR00422  35 fiiviPPPnvTGslHiGHalevslqDiliRykrmkgknvlflpGlDhag 83 
                 f +++   +  Gs H+GHa+e + +D+l+Ry+r  g  v fl+G D +g
  MMETSP1137-20121227|7825_1 269 FYVTTAINYANGSPHMGHAYESVCTDVLARYHRAYGRAVFFLTGADEHG 317
                 66666777889************************************99 PP

  == domain 2    score: 0.1 bits;  conditional E-value: 0.079
   TIGR00422 347 sktvvEpllskQWfVkvekLadkaleaaekegeikfv.PkrfekeylsWle.elkdWcISRQli.wghriP 414
                 s++++  + +  +f k++k ++++++ +e+  ++ fv P+  ++e+l+ l+  l+d  ISR  + wg ++P
  MMETSP1137-20121227|7825_1 413 SGKPLKKMEEASYFFKLSKYQQQIIAHIET--HPAFVqPEVRRNEVLERLRvPLQDLSISRTTFsWGIPVP 481
                 6777788888999***************94..6666549988888888886379*******8755998888 PP

  == domain 3    score: 70.2 bits;  conditional E-value: 5.1e-23
   TIGR00422 449 DVLDTWfsSslwplstlgWpeekkdlkkfyptsllvtgfDIiffWvarmillslaltgqvPf.kevlihglvrdeqgrKmSKSlgNvidPldliekyGaDalRftlaalvaaGrDinldlkkvea 572
                  V+  W++     +s lg+p+ + +++ f+p+ + v g DI  +W   +i  +l +  ++P   +vl hg+v +++grKmSKSlgNv+dPl++++k+  D+ R+++++ +  G D++++++ +  
  MMETSP1137-20121227|7825_1 486 HVMYVWIDALSNYISALGYPDGE-AFRAFWPAAVHVIGKDI--TWFHCVIWPALLMSLELPLpTTVLAHGFVHGADGRKMSKSLGNVVDPLEVLAKFDLDSFRYFVVRDAPLGGDLTFSEDALAI 607
                 57788999999999******877.9***************9..6888888888888889998457999***************************************************998765 PP

>> TIGR00392  ileS: isoleucine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.3   0.0   1.7e-08   6.8e-06      46      87 ..     277     318 ..     265     344 .. 0.92
   2 ?    2.7   0.0     0.014       5.8     419     476 ..     420     481 ..     390     482 .. 0.79
   3 !   67.9   0.0   2.8e-22   1.1e-19     533     791 ..     485     731 ..     483     797 .. 0.83

  Alignments for each domain:
  == domain 1    score: 22.3 bits;  conditional E-value: 1.7e-08
   TIGR00392  46 yanGeihlghalnkilKDiilryktmqGfkverkpGWDtHGL 87 
                 yanG++h+gha  ++  D++ ry++  G +v +  G D HG 
  MMETSP1137-20121227|7825_1 277 YANGSPHMGHAYESVCTDVLARYHRAYGRAVFFLTGADEHGQ 318
                 9****************************************6 PP

  == domain 2    score: 2.7 bits;  conditional E-value: 0.014
   TIGR00392 419 rateqwFikvkeikeelleeikkv.kwvpekg..ekRlkkmlenrkdWciSRqR.yWGvPip 476
                     ++F k+++ +++++++i++   +v  ++  ++ l+ +    +d  iSR   +WG+P+p
  MMETSP1137-20121227|7825_1 420 MEEASYFFKLSKYQQQIIAHIETHpAFVQPEVrrNEVLERLRVPLQDLSISRTTfSWGIPVP 481
                 566899***************9753677554444555555556789******8737****98 PP

  == domain 3    score: 67.9 bits;  conditional E-value: 2.8e-22
   TIGR00392 533 edvlDvWfdSGsspyavleyklenekkkevfpadlilEGsDQtrGWFyssllisvalsdkapy.kkvithGfvldekGrKMSKslgNvvdpekvikkyGaDvlRlyvass.dpaedlkfseeilk.evaekllkilnntlrFlllyanLdkfkpeekslkveklkelDrwilsklnslveeveealekyeflkvlra.ledfvseeLsnwYlriskdrlyaekkdedkr.aaqttlyeiletlvkllapilpflaeeiyqnlke 791
                 ++v+ vW+d  s + ++l y+   e +++ +pa + + G D t  WF      +  +s + p   +v+ hGfv  ++GrKMSKslgNvvdp +v+ k+  D++R++v+       dl fse+ l+ + + +l+ +  n+++ +l  a  +k+      +     ++ Dr     +++l e +e a+ ++ ++++++  + +f +    n Y+       +  k+d +kr  +  tl e + +l++++ p+l   a +++++l++
  MMETSP1137-20121227|7825_1 485 QHVMYVWIDALSNYISALGYPDG-EAFRAFWPAAVHVIGKDIT--WFHCVIWPALLMSLELPLpTTVLAHGFVHGADGRKMSKSLGNVVDPLEVLAKFDLDSFRYFVVRDaPLGGDLTFSEDALAiRHNAELIGTFGNLVNRAL--ALCEKYC-----AGCVPAAKADRV--LDIDALREATERAYGSFALHSAMEMaIGAFGTV---NKYVTD--TEPWHMKADDPKRnVVVRTLLEHVYALTHFVQPVLVRGASAVFSKLNT 731
                 689*******************9.9****************86..*************999984689******************************************977899******98862334445666666666555..5555444.....444444578884..5899999999999****9999998615555554...677754..45688888888887899999999999*****99999999999999887 PP

>> TIGR00399  metG_C_term: methionine--tRNA ligase, beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.4   0.0   6.6e-23   2.7e-20       8     138 ..     772     904 ..     762     905 .. 0.83

  Alignments for each domain:
  == domain 1    score: 70.4 bits;  conditional E-value: 6.6e-23
   TIGR00399   8 kllseeakkkekkkeeekaeeekkeeitiddfekvdlrvakvkkaerveksdkLlkLklDlGeek.rqvvsGiaeaYtpeeLvgkkvivvaNLkPaKlfGvkSeGmilaa.eddgkdlallspdkevkaGerv 138
                 ++ + ++k++++k +++ a ++ ++  + +d++++dlrv++v ++ +  ++d L   ++DlGe k r vvsG+ ++   + L +  v+++aN kP K++Gv+S+ m+l +  +dg  + l+ p  +  +G rv
  MMETSP1137-20121227|7825_1 772 EAEAAAKKVAAAKGAAKAAAKSGAKVEDQSDLSRLDLRVGRVLSVRKHTEADALYVEEIDLGEPKpRVVVSGLVAHMXADXLQNALVVCLANTKPSKMRGVESQAMLLCGfAADGGAVRLVRPPDGCVPGDRV 904
                 3333445555555555555555566667899**********************************9******************************************9724455699*****9999999998 PP

>> TIGR00396  leuS_bact: leucine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.6   0.0   1.2e-11     5e-09      30     206 ..     268     442 ..     261     452 .. 0.95
   2 !   23.8   0.0   5.6e-09   2.3e-06     604     649 ..     560     605 ..     551     682 .. 0.93

  Alignments for each domain:
  == domain 1    score: 32.6 bits;  conditional E-value: 1.2e-11
   TIGR00396  30 kyYiLsmfPYPsgalHlGHvrnYtitDvlsRykrlkgynvlhPiGfDaFGlPaenaaiergtaPakwteeniakmkkqlqalgfsydwdrelattdpeYykftqwiFlelfekgLaykkeaevnwcpedktvLaneevidsdGrseRgdasvekkelkqwvlkitkyaekLledLee 206
                  +Y+ + + Y  g  H+GH    + tDvl+Ry+r+ g  v    G D  G    + a e + aP +  +  ++++++  +alg++ d    ++t+ +++      ++ +   kg +y    + ++  +++t +   +   +d + + ++ + +k e   +++k+ ky ++++ ++e+
  MMETSP1137-20121227|7825_1 268 SFYVTTAINYANGSPHMGHAYESVCTDVLARYHRAYGRAVFFLTGADEHGQKIADTAREANLAPIQLCDRSVSQFHALNTALGVAND--GYVRTSSDHHKAGATAVWKKAASKGDIYLGVYSGWYNVREETFVTETDAAAADYMDQVSGKPLKKMEEASYFFKLSKYQQQIIAHIET 442
                 58999******************************************************************************9876..579999999999999******************************99999999999*************************9999886 PP

  == domain 2    score: 23.8 bits;  conditional E-value: 5.6e-09
   TIGR00396 604 ekmskskkngidPqeivkkyGaDalRlyilFasPieksleWdesgl 649
                  kmsks +n++dP e+++k+  D+ R +++  +P+  +l+++e++l
  MMETSP1137-20121227|7825_1 560 RKMSKSLGNVVDPLEVLAKFDLDSFRYFVVRDAPLGGDLTFSEDAL 605
                 6****************************************99987 PP

>> TIGR00435  cysS: cysteine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.0   0.0     8e-08   3.3e-05      35     110 ..     282     357 ..     268     387 .. 0.89
   2 !   21.1   0.0   7.4e-08   3.1e-05     255     310 ..     550     607 ..     517     641 .. 0.80

  Alignments for each domain:
  == domain 1    score: 21.0 bits;  conditional E-value: 8e-08
   TIGR00435  35 sHlGhaRtlvvfDvlrrilqylgYdvqyvqNiTDidDKiikrAreeelteeevserfieayledleaLnvlkpdle 110
                  H+Gha + v+ Dvl+r+ ++ g  v +     +   Ki  +Are +l   ++++r +++++   +aL+v +  + 
  MMETSP1137-20121227|7825_1 282 PHMGHAYESVCTDVLARYHRAYGRAVFFLTGADEHGQKIADTAREANLAPIQLCDRSVSQFHALNTALGVANDGYV 357
                 5********************************************************************9876654 PP

  == domain 2    score: 21.1 bits;  conditional E-value: 7.4e-08
   TIGR00435 255 Hngflk.iegeKmSKSlgNfitikdllkkfdpralRlllls.vhyrnqldfseellee 310
                   gf++  +g KmSKSlgN++   ++l kfd   +R++++  +     l fse++l+ 
  MMETSP1137-20121227|7825_1 550 AHGFVHgADGRKMSKSLGNVVDPLEVLAKFDLDSFRYFVVRdAPLGGDLTFSEDALAI 607
                 4566664799***************************998614567788888888765 PP

>> TIGR02222  chap_CsaA: export-related chaperone CsaA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.3   0.0   2.3e-12   9.6e-10       3     106 ..     802     904 ..     800     905 .. 0.86

  Alignments for each domain:
  == domain 1    score: 36.3 bits;  conditional E-value: 2.3e-12
   TIGR02222   3 dfekvdlrvGriveaedfpkarkPayklkvdlGeelGvkkssaqitklykkeelvgrlvvavvnfppkriaglksev.lvlGvideegevvllqpdrevklGtkv 106
                 d++++dlrvGr+++++++ +a    y+ ++dlGe+   +   + + ++  ++ l + lvv+  n  p ++ g++s+  l+ G+  + g v+l+ p      G++v
  MMETSP1137-20121227|7825_1 802 DLSRLDLRVGRVLSVRKHTEAD-ALYVEEIDLGEPKP-RVVVSGLVAHMXADXLQNALVVCLANTKPSKMRGVESQAmLLCGFAADGGAVRLVRPPDGCVPGDRV 904
                 789*****************97.57999*****6655.555555666699*************************86267799**********998888888876 PP

>> TIGR00395  leuS_arch: leucine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   1.8e-06   0.00073      26      79 ..     268     321 ..     261     331 .. 0.87
   2 !   18.1   0.0   2.8e-07   0.00012     567     729 ..     509     672 ..     507     720 .. 0.67

  Alignments for each domain:
  == domain 1    score: 15.4 bits;  conditional E-value: 1.8e-06
   TIGR00395  26 kffltvayPylnGvlhaGhlrtftivevvarfermkgknvLfplgfhvtGtPil 79 
                  f++t a  y nG  h+Gh++    ++v ar++r  g+ v+f  g    G  i 
  MMETSP1137-20121227|7825_1 268 SFYVTTAINYANGSPHMGHAYESVCTDVLARYHRAYGRAVFFLTGADEHGQKIA 321
                 5999*************************************9888776666665 PP

  == domain 2    score: 18.1 bits;  conditional E-value: 2.8e-07
   TIGR00395 567 efeyfyPldlrisakdLipnhLtfyifthvaifPeefWPrgivvnGyvl.legkklskskGnlltlkeavekfGadvarlylldaaelvedadfkesev..eaakkrlerlkefaeeiakksdlevg..eelsfldrwllsrlnkaikevkealenlelrkavkaalf 729
                  f+ f+P  +++ +kd+   h +  i+    +  e   P ++ ++G+v   +g+k+sks Gn++   e++ kf  d  r +++  a l  d  f e  +     ++ +  + +++++     +   +   +    dr l  +++++ + +++a+ ++ l+ a+++a+ 
  MMETSP1137-20121227|7825_1 509 AFRAFWPAAVHVIGKDITWFHCV--IWPALLMSLELPLPTTVLAHGFVHgADGRKMSKSLGNVVDPLEVLAKFDLDSFRYFVVRDAPLGGDLTFSEDALaiRHNAELIGTFGNLVNRALALCEKYCAgcVPAAKADRVL--DIDALREATERAYGSFALHSAMEMAIG 672
                 68999999999999999887765..455555555677899999999986479***************************************999886541133344455555555555444433333123334444444..455555556666666666666666654 PP

>> TIGR00472  pheT_bact: phenylalanine--tRNA ligase, beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.9   0.0   1.4e-09   5.9e-07      23     121 ..     787     880 ..     777     883 .. 0.85

  Alignments for each domain:
  == domain 1    score: 25.9 bits;  conditional E-value: 1.4e-09
   TIGR00472  23 aekltsiGlEveeveelkkslkgvvvGkvlevekhPnadkLkvckVdigekellqivcgaknveagkkVvvAlegAkLpnglkIkksklrGveSeGMl.C 121
                 a++  ++G +ve+  +l+  +  + vG+vl+v+kh +ad L+v ++d+ge +++ +v+g   +   +    Al+   L+n    k+sk+rGveS+ Ml C
  MMETSP1137-20121227|7825_1 787 AKAAAKSGAKVEDQSDLSRLD--LRVGRVLSVRKHTEADALYVEEIDLGEPKPRVVVSGLVAHMXADXLQNALVV-CLAN---TKPSKMRGVESQAMLlC 880
                 5677899******99998877..9***********************************9999888876555553.4555...5************9635 PP

>> TIGR03447  mycothiol_MshC: cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.0   0.0    0.0012      0.48      36      80 ..     266     312 ..     233     358 .. 0.76
   2 !    7.9   0.0    0.0006      0.24     277     297 ..     550     570 ..     528     579 .. 0.85

  Alignments for each domain:
  == domain 1    score: 7.0 bits;  conditional E-value: 0.0012
   TIGR03447  36 easlyvcGitPyd..athlGhaatylafdlvnrvlldaghkvhyvqn 80 
                   s+yv     y   + h+Gha   ++ d++ r+ ++ g+ v +   
  MMETSP1137-20121227|7825_1 266 AGSFYVTTAINYAngSPHMGHAYESVCTDVLARYHRAYGRAVFFLTG 312
                 55789988888853378***********************9988765 PP

  == domain 2    score: 7.9 bits;  conditional E-value: 0.0006
   TIGR03447 277 vhagmigldGekmskskGnlv 297
                 +h  + g dG+kmsks+Gn+v
  MMETSP1137-20121227|7825_1 550 AHGFVHGADGRKMSKSLGNVV 570
                 34445589***********87 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (963 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       160  (0.0390054); expected 82.0 (0.02)
Passed bias filter:                       97  (0.023647); expected 82.0 (0.02)
Passed Vit filter:                        30  (0.00731351); expected 4.1 (0.001)
Passed Fwd filter:                        12  (0.0029254); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.85u 0.14s 00:00:00.99 Elapsed: 00:00:00.85
# Mc/sec: 1495.36
//
Query:       MMETSP1137-20121227|7826_1  [L=281]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.5e-69  229.8   0.0    6.9e-69  229.4   0.0    1.0  1  TIGR00235 udk: uridine kinase
    1.8e-11   41.8   0.0    4.4e-11   40.5   0.0    1.6  2  TIGR00554 panK_bact: pantothenate kinase
    0.00022   18.9   0.0    0.00043   18.0   0.0    1.4  1  TIGR00101 ureG: urease accessory protein UreG
    0.00086   17.0   0.3      0.032   11.9   0.1    2.1  2  TIGR00152 TIGR00152: dephospho-CoA kinase
     0.0019   15.4   0.1      0.003   14.7   0.1    1.2  1  TIGR02782 TrbB_P: P-type conjugative transfer ATPase TrbB
     0.0033   15.3   0.2     0.0059   14.5   0.1    1.4  1  TIGR00176 mobB: molybdopterin-guanine dinucleotide biosynthesis protein B
     0.0052   14.6   0.0     0.0074   14.1   0.0    1.1  1  TIGR03499 FlhF: flagellar biosynthesis protein FlhF
     0.0064   13.4   0.0     0.0093   12.8   0.0    1.2  1  TIGR02788 VirB11: P-type DNA transfer ATPase VirB11
  ------ inclusion threshold ------
      0.027   11.8   0.0      0.042   11.1   0.0    1.2  1  TIGR00073 hypB: hydrogenase accessory protein HypB
      0.037   10.7   0.0      0.063    9.9   0.0    1.3  1  TIGR02928 TIGR02928: orc1/cdc6 family replication initiation protein
       0.04   11.4   0.2        1.5    6.3   0.0    2.1  2  TIGR00017 cmk: cytidylate kinase


Domain annotation for each model (and alignments):
>> TIGR00235  udk: uridine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  229.4   0.0   1.9e-71   6.9e-69       7     206 ..      30     238 ..      25     239 .. 0.92

  Alignments for each domain:
  == domain 1    score: 229.4 bits;  conditional E-value: 1.9e-71
   TIGR00235   7 iiigiaGasgsGkttvaekivellkk...ekivlisqDnyYkdl..sdkelaerkkinfDhPdaldldlllehlknLkkgk..avdvPvYdyvehtr..kketvkvepkkvvileGilllvderlrdlldlkifvdtdldirlirrlerDieerGrsldsvikqyrkvvrpmyekfveptkkyaDliiPeggknevainllkakiksll 206
                 + ig+aG+ +sGkttv+ek+v+ +++    +++ i+qD++Yk+l  s++e+a  +++nfDhPda+d dl ++ l++L  g   +v+vP Yd+ +h r  +++ + ve  +vvi eGil+l derlr lldlkifvd+d dirl+rr++rDi erGr+l++v+ qy+k+v+p +  f++ptk +aD+++P+gg+n+vai+ll +++ +ll
  MMETSP1137-20121227|7826_1  30 FCIGVAGGTASGKTTVVEKLVQRIRDnteVRVASITQDCFYKPLssSEREQALASNYNFDHPDAFDFDLTVQVLQHLHGGDpaPVAVPQYDFCSHSRlsTDHDTLVEAPQVVIFEGILALHDERLRALLDLKIFVDADDDIRLARRIQRDIAERGRDLAGVLMQYEKFVKPAFDSFIRPTKCHADIVVPRGGDNTVAIELLAQHVATLL 238
                 579*********************9853345778*********9445566667899**********************9863369************8888999****************************************************************************************************98875 PP

>> TIGR00554  panK_bact: pantothenate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.5   0.0   1.2e-13   4.4e-11      78     224 ..      28     168 ..      20     188 .. 0.78
   2 ?   -2.1   0.0       1.1   4.3e+02     272     300 ..     197     225 ..     186     230 .. 0.77

  Alignments for each domain:
  == domain 1    score: 40.5 bits;  conditional E-value: 1.2e-13
   TIGR00554  78 ipyiisiaGsvavGksttarilqkllsrlp..eerkvelittdGflyptakl.kkknllkkkGf..pesydvkklvkfladlksGkdn.vtapvyshltydvi.edkfevvekadilileGlnvlqsgtdkddetdrvfvsdfvdfsiyvdaee 224
                  p+ i++aG  a Gk+t    ++kl+ r+   +e +v  it d f  p++   +++ l ++  f  p+++d +  v+ l+ l  G ++ v  p y    + +   d++  ve ++++i+eG+  l     +           ++d+ i+vda++
  MMETSP1137-20121227|7826_1  28 RPFCIGVAGGTASGKTTV---VEKLVQRIRdnTEVRVASITQDCFYKPLSSSeREQALASNYNFdhPDAFDFDLTVQVLQHLHGGDPApVAVPQYDFCSHSRLsTDHDTLVEAPQVVIFEGILALHDERLRA----------LLDLKIFVDADD 168
                 69*************995...556666555115678899*********98761566677777766699*****************9864999****999987626788889***********9998777764..........455555555554 PP

  == domain 2    score: -2.1 bits;  conditional E-value: 1.1
   TIGR00554 272 inrlnlkqnilptreradlilkkgdnhkv 300
                   ++ ++  i pt+  ad+++ +g +  v
  MMETSP1137-20121227|7826_1 197 FVKPAFDSFIRPTKCHADIVVPRGGDNTV 225
                 55667778899*******99988766655 PP

>> TIGR00101  ureG: urease accessory protein UreG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.0   1.2e-06   0.00043       3      40 ..      31      70 ..      29      82 .. 0.85

  Alignments for each domain:
  == domain 1    score: 18.0 bits;  conditional E-value: 1.2e-06
   TIGR00101  3 kigvagpvgsgktaliealtrelakkyd..lavitndiyt 40
                 igvag   sgkt+++e+l+++++++ +  +a it+d + 
  MMETSP1137-20121227|7826_1 31 CIGVAGGTASGKTTVVEKLVQRIRDNTEvrVASITQDCFY 70
                59*********************98765116779999875 PP

>> TIGR00152  TIGR00152: dephospho-CoA kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.9   0.1   8.7e-05     0.032       2      21 ..      32      51 ..      31      68 .. 0.86
   2 ?    3.2   0.0     0.039        15     106     145 ..     139     179 ..     125     196 .. 0.79

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 8.7e-05
   TIGR00152  2 igltGgigsGKstvakilkd 21
                ig+ Gg +sGK+tv++ l +
  MMETSP1137-20121227|7826_1 32 IGVAGGTASGKTTVVEKLVQ 51
                9*************987755 PP

  == domain 2    score: 3.2 bits;  conditional E-value: 0.039
   TIGR00152 106 alvlldvpL.lfenkleklvdkvivvevskelqlerlmkrd 145
                 ++v+++  L l    l++l d  i v++++++ l+r ++rd
  MMETSP1137-20121227|7826_1 139 QVVIFEGILaLHDERLRALLDLKIFVDADDDIRLARRIQRD 179
                 5555554441556699************************8 PP

>> TIGR02782  TrbB_P: P-type conjugative transfer ATPase TrbB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.1     8e-06     0.003     139     168 ..      32      60 ..      17      68 .. 0.80

  Alignments for each domain:
  == domain 1    score: 14.7 bits;  conditional E-value: 8e-06
   TIGR02782 139 ilvvGGtgsGkttLanallaeiaksapddr 168
                 i v+GGt+sGktt++  l+++i  +  + r
  MMETSP1137-20121227|7826_1  32 IGVAGGTASGKTTVVEKLVQRIRDN-TEVR 60 
                 679*******************987.3444 PP

>> TIGR00176  mobB: molybdopterin-guanine dinucleotide biosynthesis protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.1   1.6e-05    0.0059       2      30 ..      32      61 ..      31      67 .. 0.81

  Alignments for each domain:
  == domain 1    score: 14.5 bits;  conditional E-value: 1.6e-05
   TIGR00176  2 lqivgykdsGKTtlieklvkelkar.gyrV 30
                ++++g   sGKTt++eklv++++++  +rV
  MMETSP1137-20121227|7826_1 32 IGVAGGTASGKTTVVEKLVQRIRDNtEVRV 61
                7899****************9986514555 PP

>> TIGR03499  FlhF: flagellar biosynthesis protein FlhF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.0     2e-05    0.0074     193     239 ..      24      69 ..      12      70 .. 0.88

  Alignments for each domain:
  == domain 1    score: 14.1 bits;  conditional E-value: 2e-05
   TIGR03499 193 eilekggviaLvGptGvGKTTTlAKLAarfvlehgkkkValiTtDty 239
                 +i +++ +i + G t +GKTT + KL +r   +  + +Va iT D++
  MMETSP1137-20121227|7826_1  24 DIRSRPFCIGVAGGTASGKTTVVEKLVQRIRDN-TEVRVASITQDCF 69 
                 667777788899*******************99.888********98 PP

>> TIGR02788  VirB11: P-type DNA transfer ATPase VirB11
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.8   0.0   2.5e-05    0.0093     147     171 ..      32      56 ..      22      70 .. 0.81

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 2.5e-05
   TIGR02788 147 iiisGgtgsgKTTflkalvkliPke 171
                 i ++Ggt+sgKTT+++ lv+ i  +
  MMETSP1137-20121227|7826_1  32 IGVAGGTASGKTTVVEKLVQRIRDN 56 
                 5599****************99765 PP

>> TIGR00073  hypB: hydrogenase accessory protein HypB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00011     0.042      31      66 ..      30      67 ..      21      78 .. 0.80

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 0.00011
   TIGR00073 31 lvlnllssiGsGktlllekliealkk..evkiavieGD 66
                +++ + +   sGkt+++ekl++++ +  ev++a i+ D
  MMETSP1137-20121227|7826_1 30 FCIGVAGGTASGKTTVVEKLVQRIRDntEVRVASITQD 67
                6777888999************9976125667777766 PP

>> TIGR02928  TIGR02928: orc1/cdc6 family replication initiation protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.0   0.00017     0.063      39      82 ..      28      68 ..      21      82 .. 0.84

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 0.00017
   TIGR02928 39 rpsnvliyGktGtGKtavtkkvlkeleeaaeekdvrvstvyvnC 82
                rp  + + G t +GKt+v++k+++++++++e    rv+ ++ +C
  MMETSP1137-20121227|7826_1 28 RPFCIGVAGGTASGKTTVVEKLVQRIRDNTEV---RVASITQDC 68
                67778899*******************99885...466666666 PP

>> TIGR00017  cmk: cytidylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.0     0.039        14       3      25 ..      30      52 ..      28      55 .. 0.87
   2 ?    6.3   0.0    0.0041       1.5     139     159 ..     159     179 ..     157     196 .. 0.79

  Alignments for each domain:
  == domain 1    score: 3.1 bits;  conditional E-value: 0.039
   TIGR00017  3 liiaiDGPsaaGKstvakalaek 25
                + i + G +a+GK+tv  +l ++
  MMETSP1137-20121227|7826_1 30 FCIGVAGGTASGKTTVVEKLVQR 52
                57999************998776 PP

  == domain 2    score: 6.3 bits;  conditional E-value: 0.0041
   TIGR00017 139 elKifLdAsveeRAkRRlkdl 159
                 +lKif+dA  ++R  RR++  
  MMETSP1137-20121227|7826_1 159 DLKIFVDADDDIRLARRIQRD 179
                 69***********99998743 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (281 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       167  (0.0407118); expected 82.0 (0.02)
Passed bias filter:                      164  (0.0399805); expected 82.0 (0.02)
Passed Vit filter:                        42  (0.0102389); expected 4.1 (0.001)
Passed Fwd filter:                        11  (0.00268162); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.31u 0.14s 00:00:00.45 Elapsed: 00:00:00.53
# Mc/sec: 699.79
//
Query:       MMETSP1137-20121227|7827_1  [L=89]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (89 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        30  (0.00731351); expected 82.0 (0.02)
Passed bias filter:                       26  (0.00633837); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.15s 00:00:00.29 Elapsed: 00:00:00.33
# Mc/sec: 355.97
//
Query:       MMETSP1137-20121227|7828_1  [L=452]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.2e-39  132.2   0.0      6e-39  131.7   0.0    1.2  1  TIGR00101 ureG: urease accessory protein UreG
    0.00012   19.5   0.0    0.00018   18.9   0.0    1.2  1  TIGR00073 hypB: hydrogenase accessory protein HypB
     0.0047   13.9   0.0     0.0072   13.2   0.0    1.2  1  TIGR00682 lpxK: tetraacyldisaccharide 4'-kinase
  ------ inclusion threshold ------
      0.039   11.4   0.0       0.06   10.8   0.0    1.2  1  TIGR00235 udk: uridine kinase


Domain annotation for each model (and alignments):
>> TIGR00101  ureG: urease accessory protein UreG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  131.7   0.0   5.9e-42     6e-39       7     105 ..     353     452 .]     344     452 .] 0.93

  Alignments for each domain:
  == domain 1    score: 131.7 bits;  conditional E-value: 5.9e-42
   TIGR00101   7 agpvgsgktaliealtrelakkydlavitndiytkedaeflvknsvlpperilgvetggcphtairedaslnleaveelearf.pdlelvliesggdnls 105
                  gpvgsgktal+ +l+r+l+k+ ++ v+tndi+t+edaefl++n++lpperi  vetggcph+aired s nl+a+eel+a   p+ el+l esggdnl+
  MMETSP1137-20121227|7828_1 353 GGPVGSGKTALVLQLCRSLRKRMSIGVVTNDIFTREDAEFLTRNEALPPERIRAVETGGCPHAAIREDVSANLAALEELTAGVsPPPELLLCESGGDNLA 452
                 49*****************************************************************************98762789***********96 PP

>> TIGR00073  hypB: hydrogenase accessory protein HypB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.0   1.8e-07   0.00018      38      89 ..     355     410 ..     350     431 .. 0.83

  Alignments for each domain:
  == domain 1    score: 18.9 bits;  conditional E-value: 1.8e-07
   TIGR00073  38 siGsGktlllekliealkkevkiavieGDlitkaDaeRlrkagv....kaiqintG 89 
                  +GsGkt+l+ +l  +l k + i+v++ D+ t+ Dae l ++++    ++ +++tG
  MMETSP1137-20121227|7828_1 355 PVGSGKTALVLQLCRSLRKRMSIGVVTNDIFTREDAEFLTRNEAlppeRIRAVETG 410
                 58***********************************9988765222235556666 PP

>> TIGR00682  lpxK: tetraacyldisaccharide 4'-kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   0.0   7.1e-06    0.0072      29      67 ..     341     381 ..     330     390 .. 0.83

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 7.1e-06
   TIGR00682  29 kavvisVGNlsvG...GtGKTpvVlwLaeaLkerglrvgvls 67 
                 +a  i +G +  G   G+GKT +Vl L   L++r +++gv++
  MMETSP1137-20121227|7828_1 341 RAFTIGIGYCISGgpvGSGKTALVLQLCRSLRKR-MSIGVVT 381
                 566677899988844459****************.*****98 PP

>> TIGR00235  udk: uridine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   5.8e-05      0.06      11      47 ..     351     389 ..     340     398 .. 0.81

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 5.8e-05
   TIGR00235  11 iaGa.sgsGkttvaekivellkk.ekivlisqDnyYkdl 47 
                 i+G+  gsGkt+++ +++ +l+k  +i+++++D + ++ 
  MMETSP1137-20121227|7828_1 351 ISGGpVGSGKTALVLQLCRSLRKrMSIGVVTNDIFTRED 389
                 5555279**************99899*******997754 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (452 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       183  (0.0446124); expected 82.0 (0.02)
Passed bias filter:                      117  (0.0285227); expected 82.0 (0.02)
Passed Vit filter:                        21  (0.00511945); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.36u 0.15s 00:00:00.51 Elapsed: 00:00:00.40
# Mc/sec: 1491.48
//
Query:       MMETSP1137-20121227|7829_1  [L=358]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (358 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        56  (0.0136519); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.16s 00:00:00.43 Elapsed: 00:00:00.51
# Mc/sec: 926.51
//
Query:       MMETSP1137-20121227|7830_1  [L=636]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (636 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       155  (0.0377864); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.16s 00:00:00.57 Elapsed: 00:00:00.39
# Mc/sec: 2152.44
//
Query:       MMETSP1137-20121227|7831_1  [L=144]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (144 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        92  (0.0224281); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.16s 00:00:00.35 Elapsed: 00:00:00.25
# Mc/sec: 760.26
//
Query:       MMETSP1137-20121227|7832_1  [L=289]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      8e-06   23.0   0.4    1.8e-05   21.8   0.3    1.7  1  TIGR03921 T7SS_mycosin: type VII secretion-associated serine protease mycosin


Domain annotation for each model (and alignments):
>> TIGR03921  T7SS_mycosin: type VII secretion-associated serine protease mycosin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.8   0.3   4.4e-09   1.8e-05       2      42 ..     181     230 ..     180     268 .. 0.82

  Alignments for each domain:
  == domain 1    score: 21.8 bits;  conditional E-value: 4.4e-09
   TIGR03921   2 eleeawklstGa.gvtVAViDtGvd.rhPrLpgev..aGgDlve.....s 42 
                  +eeaw +s G+  v +A+iD+Gvd +hP+++++   + g++       +
  MMETSP1137-20121227|7832_1 181 GMEEAWAISAGKpNVIIAIIDSGVDmQHPEMRSNAwlNTGEICXngeddD 230
                 689********956789***************998777777766344333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (289 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        57  (0.0138957); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.23u 0.15s 00:00:00.38 Elapsed: 00:00:00.36
# Mc/sec: 1059.58
//
Query:       MMETSP1137-20121227|7833_1  [L=417]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.69    7.4   7.3          1    6.8   5.1    1.2  1  TIGR03789 pdsO: proteobacterial sortase system OmpA family protein


Domain annotation for each model (and alignments):
>> TIGR03789  pdsO: proteobacterial sortase system OmpA family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   5.1   0.00026         1      88     139 ..      44      95 ..      31     108 .. 0.76

  Alignments for each domain:
  == domain 1    score: 6.8 bits;  conditional E-value: 0.00026
   TIGR03789  88 seiakqeqqlvaltekqqaleqleaeyqqaqkeletlqqeqeqlleelalem 139
                 ++ +kq+ + +  ++++ + eq+eae++ a+++ +++q +q+q+++++al +
  MMETSP1137-20121227|7833_1  44 ASERKQRVARALAEAEHCEAEQREAEQRAAEQHEAEQQMQQQQQTSSTALRT 95 
                 3445555555556666778899999999999999999999999999999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (417 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       369  (0.0899561); expected 82.0 (0.02)
Passed bias filter:                      214  (0.0521697); expected 82.0 (0.02)
Passed Vit filter:                        24  (0.0058508); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.19s 00:00:00.61 Elapsed: 00:00:00.45
# Mc/sec: 1223.10
//
Query:       MMETSP1137-20121227|7834_1  [L=310]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0026   15.4   0.0      0.004   14.8   0.0    1.3  1  TIGR03137 AhpC: peroxiredoxin


Domain annotation for each model (and alignments):
>> TIGR03137  AhpC: peroxiredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   9.7e-07     0.004      22      68 ..     110     156 ..     103     186 .. 0.87

  Alignments for each domain:
  == domain 1    score: 14.8 bits;  conditional E-value: 9.7e-07
   TIGR03137  22 vevtdedlkGkwsvlvfypadftfvcpteledladkyeelkelgvev 68 
                  +v d d++Gkw +l f  +    +cp e+e ++   +el++ g  v
  MMETSP1137-20121227|7834_1 110 NTVRDTDFHGKWVLLYFGFTKCPDICPQEMEKVTTVLNELEAKGQHV 156
                 6899*******************************999999888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (310 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        82  (0.0199902); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.25u 0.16s 00:00:00.41 Elapsed: 00:00:00.28
# Mc/sec: 1461.31
//
Query:       MMETSP1137-20121227|7835_1  [L=427]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (427 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        85  (0.0207216); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.14s 00:00:00.45 Elapsed: 00:00:00.38
# Mc/sec: 1483.14
//
Query:       MMETSP1137-20121227|7836_1  [L=620]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.9e-08   31.1   4.4     0.0035   13.6   0.2    3.0  3  TIGR03591 polynuc_phos: polyribonucleotide nucleotidyltransferase
    2.6e-05   21.9  11.9        0.1   10.2   0.1    3.2  3  TIGR03665 arCOG04150: arCOG04150 universal archaeal KH domain protein
    6.2e-05   21.2   3.8      0.088   11.0   0.1    3.1  3  TIGR01952 nusA_arch: NusA family KH domain protein, archaeal
     0.0028   14.5   0.5      0.048   10.5   0.1    2.2  2  TIGR01953 NusA: transcription termination factor NusA
     0.0032   13.8   4.3       0.22    7.8   0.0    2.9  3  TIGR03319 YmdA_YtgF: conserved hypothetical protein YmdA/YtgF
  ------ inclusion threshold ------
      0.048   11.2   1.4        6.7    4.2   0.0    3.1  3  TIGR01008 rpsC_E_A: ribosomal protein S3


Domain annotation for each model (and alignments):
>> TIGR03591  polynuc_phos: polyribonucleotide nucleotidyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.5   0.1   1.2e-05    0.0079     552     589 ..      33      70 ..      13     104 .. 0.78
   2 !   13.6   0.2   5.2e-06    0.0035     554     589 ..     130     165 ..     123     191 .. 0.88
   3 !    5.2   0.0    0.0019       1.3     556     589 ..     287     320 ..     274     360 .. 0.75

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 1.2e-05
   TIGR03591 552 ietikinkdkireviGkgGkvireiieetgakidiedd 589
                 +  + +++ +++++iGkgG++i+ i e +g++++i d 
  MMETSP1137-20121227|7836_1  33 VLRLLVSNLQVGTIIGKGGANIKGIREMSGCRMQIADM 70 
                 5567788889*************************996 PP

  == domain 2    score: 13.6 bits;  conditional E-value: 5.2e-06
   TIGR03591 554 tikinkdkireviGkgGkvireiieetgakidiedd 589
                 ++ +++++++++iGkgG++i+++ ee+ga i++e +
  MMETSP1137-20121227|7836_1 130 KLVLDNNQVGRIIGKGGSTIKQMREESGAFIKVEAT 165
                 5667899*************************9865 PP

  == domain 3    score: 5.2 bits;  conditional E-value: 0.0019
   TIGR03591 556 kinkdkireviGkgGkvireiieetgakidiedd 589
                  ++   ++++iG+gG+ i+e+ e + a i+++ +
  MMETSP1137-20121227|7836_1 287 LVPVGLVGRIIGRGGSGIKEMRELSHAMIKVNAE 320
                 57778899*********************99865 PP

>> TIGR03665  arCOG04150: arCOG04150 universal archaeal KH domain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.0   0.9   0.00068      0.46     101     139 ..      44      79 ..      39      98 .. 0.71
   2 !    9.7   0.4   0.00021      0.14     100     127 ..     138     165 ..     132     193 .. 0.75
   3 !   10.2   0.1   0.00015       0.1     101     146 ..     294     347 ..     289     357 .. 0.80

  Alignments for each domain:
  == domain 1    score: 8.0 bits;  conditional E-value: 0.00068
   TIGR03665 101 griIGeeGktrkiieeltgvkisvygktvsiiGeieqvk 139
                 g iIG++G   k i+e++g ++ + +    ++G++e++ 
  MMETSP1137-20121227|7836_1  44 GTIIGKGGANIKGIREMSGCRMQIADM---VLGSTERLI 79 
                 89********************99984...344444333 PP

  == domain 2    score: 9.7 bits;  conditional E-value: 0.00021
   TIGR03665 100 kgriIGeeGktrkiieeltgvkisvygk 127
                  griIG++G t k+++e +g+ i v+  
  MMETSP1137-20121227|7836_1 138 VGRIIGKGGSTIKQMREESGAFIKVEAT 165
                 59*******************9999865 PP

  == domain 3    score: 10.2 bits;  conditional E-value: 0.00015
   TIGR03665 101 griIGeeGktrkiieeltgvkisvyg........ktvsiiGeieqvkiareAie 146
                 griIG++G   k ++el+ + i v+         ++v + G++eq ++a + i+
  MMETSP1137-20121227|7836_1 294 GRIIGRGGSGIKEMRELSHAMIKVNAecepgtdqRKVVVTGTPEQTAMALQLIN 347
                 9**********************9753334444468999999999998877775 PP

>> TIGR01952  nusA_arch: NusA family KH domain protein, archaeal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.0   0.1   0.00013     0.088      97     139 ..      29      71 ..      20      73 .. 0.69
   2 !    7.8   0.1    0.0012      0.83      37      70 ..     131     163 ..     123     185 .. 0.82
   3 ?    1.8   0.0     0.087        59     112     132 ..     294     314 ..     286     321 .. 0.72

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 0.00013
   TIGR01952  97 nskkvayvevepedkgvaiGkdGknierakelaeRhldiddvk 139
                 n++ v  + v++ + g +iGk+G ni+ ++e+    ++i d++
  MMETSP1137-20121227|7836_1  29 NDTMVLRLLVSNLQVGTIIGKGGANIKGIREMSGCRMQIADMV 71 
                 5556666667777777777777777777777777777776665 PP

  == domain 2    score: 7.8 bits;  conditional E-value: 0.0012
   TIGR01952  37 fvvkkgemgvAiGkgGanvkkveellgkkvelve 70 
                 +v+ ++++g  iGkgG+++k+++e  g  +++ e
  MMETSP1137-20121227|7836_1 131 LVLDNNQVGRIIGKGGSTIKQMREESGAFIKV-E 163
                 68899999*************99998877764.4 PP

  == domain 3    score: 1.8 bits;  conditional E-value: 0.087
   TIGR01952 112 gvaiGkdGknierakelaeRh 132
                 g++iG++G  i++ +el +  
  MMETSP1137-20121227|7836_1 294 GRIIGRGGSGIKEMRELSHAM 314
                 678888888888888876554 PP

>> TIGR01953  NusA: transcription termination factor NusA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.5   0.1     7e-05     0.048     296     336 ..      28      68 ..      25      71 .. 0.90
   2 ?    1.8   0.0      0.03        20     299     323 ..     126     150 ..     118     165 .. 0.78

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 7e-05
   TIGR01953 296 dedkksaevvveeeqlslaiGkeGqNvrLaskLtgwkidvk 336
                 ++d+   + +v++ q+ + iGk+G+N++ + +++g ++ + 
  MMETSP1137-20121227|7836_1  28 QNDTMVLRLLVSNLQVGTIIGKGGANIKGIREMSGCRMQIA 68 
                 578888999*************************9998886 PP

  == domain 2    score: 1.8 bits;  conditional E-value: 0.03
   TIGR01953 299 kksaevvveeeqlslaiGkeGqNvr 323
                 +++ + v+ ++q+   iGk+G+ ++
  MMETSP1137-20121227|7836_1 126 SHTLKLVLDNNQVGRIIGKGGSTIK 150
                 4778888999999999999998776 PP

>> TIGR03319  YmdA_YtgF: conserved hypothetical protein YmdA/YtgF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.3   0.1    0.0018       1.2     203     242 ..      29      69 ..      12      75 .. 0.72
   2 !    7.8   0.0   0.00032      0.22     200     246 ..     123     168 ..     113     169 .. 0.78
   3 ?    0.4   0.2     0.053        37     215     232 ..     292     309 ..     284     316 .. 0.86

  Alignments for each domain:
  == domain 1    score: 5.3 bits;  conditional E-value: 0.0018
   TIGR03319 203 stvsvvslpndem.kGRiiGreGRniralEtltGvdliiDd 242
                 + + v+ l   ++  G iiG+ G ni+ + ++ G  + i d
  MMETSP1137-20121227|7836_1  29 NDTMVLRLLVSNLqVGTIIGKGGANIKGIREMSGCRMQIAD 69 
                 3444444444444159*****************99887766 PP

  == domain 2    score: 7.8 bits;  conditional E-value: 0.00032
   TIGR03319 200 vaestvsvvslpndemkGRiiGreGRniralEtltGvdliiDdtPea 246
                 +++s +  + l+n++  GRiiG+ G  i+ + +  G  + ++ tP a
  MMETSP1137-20121227|7836_1 123 TGQSHTLKLVLDNNQ-VGRIIGKGGSTIKQMREESGAFIKVEATPTA 168
                 555555555555555.5**********************9**99986 PP

  == domain 3    score: 0.4 bits;  conditional E-value: 0.053
   TIGR03319 215 mkGRiiGreGRniralEt 232
                 + GRiiGr G  i+ + +
  MMETSP1137-20121227|7836_1 292 LVGRIIGRGGSGIKEMRE 309
                 56*********9998765 PP

>> TIGR01008  rpsC_E_A: ribosomal protein S3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.0     0.065        45      44      66 ..      38      60 ..      27      76 .. 0.79
   2 ?    4.2   0.0    0.0098       6.7      41      66 ..     130     155 ..     123     193 .. 0.83
   3 ?    2.7   0.0     0.028        19      46      67 ..     290     311 ..     267     350 .. 0.77

  Alignments for each domain:
  == domain 1    score: 1.5 bits;  conditional E-value: 0.065
   TIGR01008 44 ifaerpglviGrrGrrireltel 66
                +   + g++iG++G+ i+ + e+
  MMETSP1137-20121227|7836_1 38 VSNLQVGTIIGKGGANIKGIREM 60
                55567899**********99876 PP

  == domain 2    score: 4.2 bits;  conditional E-value: 0.0098
   TIGR01008  41 kviifaerpglviGrrGrrireltel 66 
                 k+++  ++ g +iG++G++i+++ e 
  MMETSP1137-20121227|7836_1 130 KLVLDNNQVGRIIGKGGSTIKQMREE 155
                 56677788999***********9875 PP

  == domain 3    score: 2.7 bits;  conditional E-value: 0.028
   TIGR01008  46 aerpglviGrrGrrireltell 67 
                 +   g +iGr+G+ i+e+ el 
  MMETSP1137-20121227|7836_1 290 VGLVGRIIGRGGSGIKEMRELS 311
                 556789**********998864 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (620 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       110  (0.0268162); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.45u 0.12s 00:00:00.57 Elapsed: 00:00:00.52
# Mc/sec: 1573.72
//
Query:       MMETSP1137-20121227|7837_1  [L=244]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (244 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        45  (0.0109703); expected 82.0 (0.02)
Passed bias filter:                       39  (0.00950756); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.13s 00:00:00.32 Elapsed: 00:00:00.35
# Mc/sec: 920.15
//
Query:       MMETSP1137-20121227|7838_1  [L=481]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (481 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       214  (0.0521697); expected 82.0 (0.02)
Passed bias filter:                      141  (0.0343735); expected 82.0 (0.02)
Passed Vit filter:                        18  (0.0043881); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.16s 00:00:00.53 Elapsed: 00:00:00.51
# Mc/sec: 1244.84
//
Query:       MMETSP1137-20121227|7840_1  [L=200]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (200 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       119  (0.0290102); expected 82.0 (0.02)
Passed bias filter:                      100  (0.0243784); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.12s 00:00:00.32 Elapsed: 00:00:00.32
# Mc/sec: 824.93
//
Query:       MMETSP1137-20121227|7841_1  [L=368]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (368 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        81  (0.0197465); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.15s 00:00:00.42 Elapsed: 00:00:00.36
# Mc/sec: 1349.22
//
Query:       MMETSP1137-20121227|7842_1  [L=404]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (404 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       130  (0.0316919); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.14s 00:00:00.43 Elapsed: 00:00:00.44
# Mc/sec: 1211.90
//
Query:       MMETSP1137-20121227|7843_1  [L=380]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (380 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        86  (0.0209654); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.16s 00:00:00.42 Elapsed: 00:00:00.67
# Mc/sec: 748.59
//
Query:       MMETSP1137-20121227|7844_1  [L=491]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.5e-17   61.3   0.2    2.4e-17   60.6   0.1    1.2  1  TIGR00860 LIC: cation transporter family protein


Domain annotation for each model (and alignments):
>> TIGR00860  LIC: cation transporter family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.6   0.1   5.9e-21   2.4e-17      54     329 ..      27     303 ..      19     310 .. 0.86

  Alignments for each domain:
  == domain 1    score: 60.6 bits;  conditional E-value: 5.9e-21
   TIGR00860  54 ggkpvtVsinlilasiskvdeknmdytvniwlrqeWtDerLqyneeeskgvtkvrledesiWvPDillanekdarfheitkknvlvrisknGevly..sirltltlaCpmdlknfPlDvQnCslkleSygYttddiklelkeqeavqvdeslfielpefellgvl..ktrse...teetstgeYselklslvlrRrilYYllqlyiPsillvilslvsFwlnkdasgarvsLgittlLtlttfssgvreslPavsyvkaIdvylvvclvfvflalleyalVny 329
                 g+++vtV+ +  +  + +++ kn  +++++  + +W+    + ++++ +g +++ ++    W+P   + n  d  f+     n++     nGe+      r+ + l    +l+ fP+D Q  +++le   + +  i+ e ke+e+     ++  e pef+l + +  +  ++    +   + + sel++ + l+R+  +Y  + +   +l+v++s+ ++ +    +++r++L  t+lL  ttf  ++++   +v+y  ++d y + c v++f+a    a+V +
  MMETSP1137-20121227|7844_1  27 GKESVTVYTRAEILHVWDINVKNGSFSIELRINAKWKCPAKHLDKVKEDGGDDLDVDWLPDWLPQFSVINTTDRIFDWPSRFNAYKEQ--NGEIWIkgVYRFAVSLYERFNLRSFPFDLQYLNVRLEI--HNGGKISCENKENEPAVFLAGV--ESPEFSLPSHIrpGALNCvfgVHPSQRSPTSELHIVIFLERQEEFYFWNGMFLLLLIVAVSIAVWAVHWREVANRIALDLTLLLVATTFKQLLSQETARVAYLTILDKYAILCVVLLFIATWLHAIVGF 303
                 6789************************************999999999999888884444666666778888888888888888777..9998652257888888899******************5..67778********888777777..88888887653113445543245667788999*****************9999***************999*************************************************998888865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (491 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       172  (0.0419308); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.15s 00:00:00.50 Elapsed: 00:00:00.42
# Mc/sec: 1543.02
//
Query:       MMETSP1137-20121227|7845_1  [L=625]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.1e-20   68.8   0.3    6.7e-20   68.4   0.2    1.2  1  TIGR03903 TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
    1.1e-05   22.8   0.0    1.9e-05   22.0   0.0    1.3  1  TIGR03724 arch_bud32: Kae1-associated kinase Bud32


Domain annotation for each model (and alignments):
>> TIGR03903  TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.4   0.2   3.3e-23   6.7e-20       3     239 ..     193     420 ..     191     491 .. 0.89

  Alignments for each domain:
  == domain 1    score: 68.4 bits;  conditional E-value: 3.3e-23
   TIGR03903   3 ghkvaikllRedaaeeerlvaRFrReialCarLshPnivaLlDsGeaedgllFavFeyveGrtlrevLaadGaLpaaetgrLmlqvLDalaaahdaGvvhRDLkPqnimvsaadveshakvLDFGigaLlpgvedadeatltrttevlGsPaYaaPeqLRgepvtaksDlYaWGLivleCLtGkrvvqGasvaevlykqLs.PvdvslPsaiaghp...LgevLRkalnkdvrqRaasaea 239
                 gh+ a+k + +    +e    R  Re +   +  h  iv+ l   ++    lF  Fe+veG  l  +L   G ++    +   + v  al + h+  + +RDLkP+n++   +d +   k++D G+   l+       ++ltrt  v G+ +Y aPe + g     + D +a G+ ++e L G++  +G+s  ev+ k ++ P  v+ P+++ g     +  +L +a nk+ r+  a+ae 
  MMETSP1137-20121227|7845_1 193 GHRYALKCISKGR-VRESACTRVNRERETLLATDHAFIVRALAFHQSSL-HLFIRFELVEGGELTSLLSRVGRVSEDAAAFYGASVAHALGHLHSLRIAYRDLKPENLI---RDAQGYLKLVDMGMCKRLA------PNELTRT--VCGTVHYLAPEVVSGSGHGCAVDWWALGVFLFEVLAGHPPFDGDSPVEVMAKIMArPRRVAYPPSLSGDAtttIKRLLVSAPNKRLRATTAAAES 420
                 7888999998884.5777889999**99999***********9999887.9********************************************************97...7888899******987554......4457776..89**************************************************9866**********98761115567889999999998888875 PP

>> TIGR03724  arch_bud32: Kae1-associated kinase Bud32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.0   0.0   9.4e-09   1.9e-05      71     138 ..     241     316 ..     209     333 .. 0.77

  Alignments for each domain:
  == domain 1    score: 22.0 bits;  conditional E-value: 9.4e-09
   TIGR03724  71 ekkivmeyiegkklkdlleekel.......ellkevGelvgklHkagivhgDlttsNiiv.kddklyliDfGLgkk 138
                 +  i +e +eg +l  ll++           +  +v++++g+lH+ +i++ Dl ++N+i   ++ l l+D+G+ k+
  MMETSP1137-20121227|7845_1 241 HLFIRFELVEGGELTSLLSRVGRvsedaaaFYGASVAHALGHLHSLRIAYRDLKPENLIRdAQGYLKLVDMGMCKR 316
                 45678888888888888887655666676667789************************934667889*****986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (625 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       180  (0.043881); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.16s 00:00:00.62 Elapsed: 00:00:00.80
# Mc/sec: 1031.16
//
Query:       MMETSP1137-20121227|7847_1  [L=1138]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.46    5.8  18.7       0.68    5.3  13.0    1.1  1  TIGR00927 2A1904: K+-dependent Na+/Ca+ exchanger
          4    4.4  12.9      0.063   10.3   3.0    2.2  2  TIGR00599 rad18: DNA repair protein rad18


Domain annotation for each model (and alignments):
>> TIGR00927  2A1904: K+-dependent Na+/Ca+ exchanger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3  13.0   0.00033      0.68     774     934 ..     473     638 ..     450     667 .. 0.67

  Alignments for each domain:
  == domain 1    score: 5.3 bits;  conditional E-value: 0.00033
   TIGR00927 774 eesggeaeqegeseekaeeeseGeieaerkgedegegeieakeaevkGeeeeeeveaeeeteaeGdedegeieaeeeGeekededegeieak..eevevegded.eteieaeeeaevkededeGeieaeedgevkGdegeeqk..veaeeeeeedekdegeedeee 934
                   + + ++++g++ +k+  +  G  +    ++++++++ ++++ e+  +++++   ++  t+  G+  e+ i+ +++G + + + +g++++k  +++e eg +  +++ +++  ++ ++ded+ +  a+ d+e +G+ +  q+  v a+   e d ++     +++
  MMETSP1137-20121227|7847_1 473 AAQSKTQKKKGGKGGKGFLKAMGLEQPASDDDSDDDSDDDSDSEEYTPKSQAKRKVTKAATKRGGAAVEKRIQKQKKGAKINGKANGKANGKgkKAAEPEGGNGaKAKGKGKGGGNDDSDEDDSDYSAGSDSEGEGEADGAQQrsVRAQRAAERDARVALAVANST 638
                 3333344456667778888888876666678888888888888888888888877788899999999999999999999998888888877654778888776313334444555666778888889999999998865443311445555555655555555555 PP

>> TIGR00599  rad18: DNA repair protein rad18
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   1.0      0.21   4.3e+02     329     373 ..     475     519 ..     471     554 .. 0.63
   2 ?   10.3   3.0   3.1e-05     0.063      28      67 ..     879     923 ..     870     927 .. 0.84

  Alignments for each domain:
  == domain 1    score: -2.3 bits;  conditional E-value: 0.21
   TIGR00599 329 qgktpqasgnkggisklmlvkskdktgaekklkkfngkeWevaya 373
                 q+kt ++ g+kgg+  l  +  +++++    +++ + +  + +y+
  MMETSP1137-20121227|7847_1 475 QSKTQKKKGGKGGKGFLKAMGLEQPASDDDSDDDSDDDSDSEEYT 519
                 667777777777777777777777666666665555555554444 PP

  == domain 2    score: 10.3 bits;  conditional E-value: 3.1e-05
   TIGR00599  28 RChvCkdffkaPvltsCsHtFCslCiRrcLseep.....kCPlCr 67 
                  C +C +  + Pv   C+H FC  C+ +++ +++     +CP+C 
  MMETSP1137-20121227|7847_1 879 ICGLCFEDAEEPVRARCAHLFCKGCVQDYMASHAegaamHCPTCS 923
                 5999*999**********************9986333336***96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1138 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       143  (0.034861); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.71u 0.14s 00:00:00.85 Elapsed: 00:00:00.94
# Mc/sec: 1597.91
//
Query:       MMETSP1137-20121227|7848_1  [L=439]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (439 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        61  (0.0148708); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.12s 00:00:00.41 Elapsed: 00:00:00.42
# Mc/sec: 1379.60
//
Query:       MMETSP1137-20121227|7850_1  [L=667]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (667 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       674  (0.16431); expected 82.0 (0.02)
Passed bias filter:                      143  (0.034861); expected 82.0 (0.02)
Passed Vit filter:                        23  (0.00560702); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.60u 0.14s 00:00:00.74 Elapsed: 00:00:00.62
# Mc/sec: 1419.95
//
Query:       MMETSP1137-20121227|7851_1  [L=244]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (244 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        44  (0.0107265); expected 82.0 (0.02)
Passed bias filter:                       36  (0.00877621); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.15s 00:00:00.34 Elapsed: 00:00:00.33
# Mc/sec: 975.92
//
Query:       MMETSP1137-20121227|7852_1  [L=524]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (524 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        93  (0.0226719); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.13s 00:00:00.47 Elapsed: 00:00:00.57
# Mc/sec: 1192.45
//
Query:       MMETSP1137-20121227|7853_1  [L=123]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.6e-11   41.7   0.1    1.8e-11   41.7   0.1    1.0  1  TIGR02154 PhoB: phosphate regulon transcriptional regulatory protein PhoB
    3.1e-10   36.6   0.7    3.3e-10   36.5   0.5    1.0  1  TIGR02956 TMAO_torS: TMAO reductase sytem sensor TorS
    1.3e-08   32.5   0.1    1.5e-08   32.3   0.0    1.0  1  TIGR03787 marine_sort_RR: proteobacterial dedicated sortase system response regulator
    2.8e-07   28.3   0.0    3.3e-07   28.0   0.0    1.0  1  TIGR01387 cztR_silR_copR: heavy metal response regulator
    3.6e-05   20.6   0.0    4.1e-05   20.4   0.0    1.0  1  TIGR01818 ntrC: nitrogen regulation protein NR(I)
     0.0017   15.1   0.0      0.002   14.9   0.0    1.0  1  TIGR02915 PEP_resp_reg: PEP-CTERM-box response regulator transcription factor
     0.0045   14.1   0.0     0.0045   14.1   0.0    1.2  1  TIGR02875 spore_0_A: sporulation transcription factor Spo0A


Domain annotation for each model (and alignments):
>> TIGR02154  PhoB: phosphate regulon transcriptional regulatory protein PhoB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.7   0.1     3e-14   1.8e-11       3     112 ..       2     116 ..       1     123 [] 0.87

  Alignments for each domain:
  == domain 1    score: 41.7 bits;  conditional E-value: 3e-14
   TIGR02154   3 krilvvedeeairellaynlekegyevveaedaeealalikeelP..dlilldWmlpgts....GielarrlrkeeetreiPiimltargeeedrvrgletGaddyvvkPfspkel 112
                 +++lvved+  + +ll  +l++ g+e+ve+++ eea  +i+ +l    l   d  l+++s    G+ ++++lr+ +  ++i +i lta  + e   +++++Gad ++ kP s +++
  MMETSP1137-20121227|7853_1   2 AKVLVVEDDVFQSQLLVAMLSECGFEAVECNSEEEAYEAIESALTpfALAFCDMQLDDEStelgGLLVVKKLRE-NFGKQIKVISLTANEDIEVLDASIKAGADSHLLKPISQHDI 116
                 589*************************************99865135667899898876666699******96.5789*********9998888899**************9876 PP

>> TIGR02956  TMAO_torS: TMAO reductase sytem sensor TorS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.5   0.5   5.7e-13   3.3e-10     702     815 ..       2     119 ..       1     123 [] 0.92

  Alignments for each domain:
  == domain 1    score: 36.5 bits;  conditional E-value: 5.7e-13
   TIGR02956 702 arvLlvEDNevnamvaqglleklGhkvtlaesgksAleclee..kaFDlallDinLpDtd....GvtLlkqLkeleeakeelkfiavsAhvfnedvekylaagFdgflaKPlsekqLvat 815
                 a+vL+vED    +++  ++l + G + +  +s ++A e++e     F la+ D++L D +    G+   k+L+e +++  ++k+i+++A+   e ++  ++ag d+ l KP+s+++++++
  MMETSP1137-20121227|7853_1   2 AKVLVVEDDVFQSQLLVAMLSECGFEAVECNSEEEAYEAIESalTPFALAFCDMQLDDEStelgGLLVVKKLRENFGK--QIKVISLTANEDIEVLDASIKAGADSHLLKPISQHDITKI 119
                 68**************************************998899***********976555599999999999988..59*******************************9998876 PP

>> TIGR03787  marine_sort_RR: proteobacterial dedicated sortase system response regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.3   0.0   2.5e-11   1.5e-08       2     111 ..       3     117 ..       2     122 .. 0.87

  Alignments for each domain:
  == domain 1    score: 32.3 bits;  conditional E-value: 2.5e-11
   TIGR03787   2 rialvedeaairenyadalkkqGykvetyadrssaeeafkarlp..dlaiidvGlgeeid..GGfelcqelrs.lsktlpiifltardsdfdtv.sGlrlGaddyltkdislahll 111
                 ++ +ved+    +   ++l++ G++    ++ ++a ea++++l    la  d+ l++e    GG+ + ++lr    k++ +i lta + d++++ + ++ Gad +l k is++ ++
  MMETSP1137-20121227|7853_1   3 KVLVVEDDVFQSQLLVAMLSECGFEAVECNSEEEAYEAIESALTpfALAFCDMQLDDESTelGGLLVVKKLREnFGKQIKVISLTANE-DIEVLdASIKAGADSHLLKPISQHDIT 117
                 6889**************************************973468899*****9975569*********72589*********75.677663679*************87664 PP

>> TIGR01387  cztR_silR_copR: heavy metal response regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.0   0.0   5.6e-10   3.3e-07       1     104 [.       4     114 ..       4     120 .. 0.81

  Alignments for each domain:
  == domain 1    score: 28.0 bits;  conditional E-value: 5.6e-10
   TIGR01387   1 ilvvedeqktaeylqqGlsesGyvvdivsnGrdGlhlaek..ddydliildvmlp....gldGwevlkalres.aketpvllltardevadkvkGlelGaddylvkpfefa 104
                 +lvved+   ++ l   lse G+ +   +  ++  ++ e   + ++l   d++l      l G  v+k+lre+ +k+  v+ lta+++++     ++ Gad +l+kp++  
  MMETSP1137-20121227|7853_1   4 VLVVEDDVFQSQLLVAMLSECGFEAVECNSEEEAYEAIESalTPFALAFCDMQLDdestELGGLLVVKKLRENfGKQIKVISLTANEDIEVLDASIKAGADSHLLKPISQH 114
                 79*********************8655555555544433312679999999999622225789********98579999***********9999*************9765 PP

>> TIGR01818  ntrC: nitrogen regulation protein NR(I)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   0.0     7e-08   4.1e-05       1     106 [.       4     116 ..       4     122 .. 0.87

  Alignments for each domain:
  == domain 1    score: 20.4 bits;  conditional E-value: 7e-08
   TIGR01818   1 vlvvdddrsirtvlekalaeaglevrtfdnaasvlralare.qp.dllitdvrmPged....gldllkkikkrr.PklpvivmsahsdldaavkayqrGafeylpkPfdldea 106
                 vlvv+dd     +l   l+e g+e    ++ +++++a+++  +p  l + d+++ +e+    gl ++kk++++   +++vi ++a++d++   ++++ Ga  +l kP   +++
  MMETSP1137-20121227|7853_1   4 VLVVEDDVFQSQLLVAMLSECGFEAVECNSEEEAYEAIESAlTPfALAFCDMQLDDEStelgGLLVVKKLRENFgKQIKVISLTANEDIEVLDASIKAGADSHLLKPISQHDI 116
                 79************************************998677356689***9987644448999999998762579*****************************877665 PP

>> TIGR02915  PEP_resp_reg: PEP-CTERM-box response regulator transcription factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   3.4e-06     0.002       1     111 [.       4     118 ..       4     122 .. 0.77

  Alignments for each domain:
  == domain 1    score: 14.9 bits;  conditional E-value: 3.4e-06
   TIGR02915   1 lliveddlglqkqlkwsl...adyelvvaadresaialvrrhe.P.avvtldlGlPPdadsaseGlaaleqila.iaPdtkvivitGnddrenalkaielGaydfyqkPldadvlkl 111
                 +l+vedd  +q ql  ++   + +e v  +  e+a +++     P a+   d+ l  d+++   Gl +++++ +    ++kvi +t n+d e    +i++Ga     kP+ ++ ++ 
  MMETSP1137-20121227|7853_1   4 VLVVEDDV-FQSQLLVAMlseCGFEAVECNSEEEAYEAIESALtPfALAFCDMQLD-DESTELGGLLVVKKLREnFGKQIKVISLTANEDIEVLDASIKAGADSHLLKPISQHDITK 118
                 58999986.78888877655567889999999999999987651423345577774.4445557999999997626789*************99999*************8876654 PP

>> TIGR02875  spore_0_A: sporulation transcription factor Spo0A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.0   7.7e-06    0.0045      60     113 ..      63     115 ..       4     122 .. 0.90

  Alignments for each domain:
  == domain 1    score: 14.1 bits;  conditional E-value: 7.7e-06
   TIGR02875  60 yldGlgvleklaeielkakpkvlllsavGqekitkravelGadyyvlkpfdlei 113
                  l Gl v++kl+e   k + kv+ l+a    ++   +++ Gad ++lkp+  + 
  MMETSP1137-20121227|7853_1  63 ELGGLLVVKKLRENFGK-QIKVISLTANEDIEVLDASIKAGADSHLLKPISQHD 115
                 6889*******998777.99*****************************97654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (123 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       149  (0.0363237); expected 82.0 (0.02)
Passed bias filter:                      132  (0.0321794); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.19u 0.14s 00:00:00.33 Elapsed: 00:00:00.34
# Mc/sec: 477.49
//
Query:       MMETSP1137-20121227|7854_1  [L=863]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.2e-19   65.7   0.1    6.3e-19   65.1   0.1    1.2  1  TIGR03903 TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
    4.6e-06   24.1   0.0    8.5e-06   23.2   0.0    1.3  1  TIGR03724 arch_bud32: Kae1-associated kinase Bud32
     0.0098   12.6   0.0      0.016   11.9   0.0    1.2  1  TIGR01173 glmU: UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase


Domain annotation for each model (and alignments):
>> TIGR03903  TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.1   0.1   4.6e-22   6.3e-19       3     238 ..     502     734 ..     500     740 .. 0.84

  Alignments for each domain:
  == domain 1    score: 65.1 bits;  conditional E-value: 4.6e-22
   TIGR03903   3 ghkvaikllRedaaeeerlvaRFrReialCarLs.hPnivaLlDsGeaedgllFavFeyveGrtlrevL..aadGaLpaaetgrLmlqvLDalaaahdaGvvhRDLkPqnimvsaadveshakvLDFGiga.LlpgvedadeatltrttevlGsPaYaaPeqL...Rgepvtaks.......DlYaWGLivleCLtGkrvvqGasvaevlykqLsPvdvslPsaiaghpLgevLRkalnkdvrqRaasae 238
                 +++ a+k++R+       +v R   e+ +  +L  hP+i +L+D  +  d  ++ v e v+G  l   +  + +G L ++   r   q+L al   h++G +h D+kP+n+ ++ +     a ++D+G +  ++p+ +            + G+PaYaaPe L   Rg+ vt ks       D++a G  ++e L G++  +G+   e l +++      lPs +  + L  ++ + l+ ++ +Ra  ae
  MMETSP1137-20121227|7854_1 502 KQQLAVKVVRKG--SLDGKVDRIMWEVHVMRHLAgHPHIAKLVDVIDLTD-AVYIVMERVDGPCLLSFIrrQPQGRLEPEVARRFFCQMLSALKFTHANGYIHGDVKPENVRLTSTC--DSAVLVDWGFAQrIGPQPHR----------VMQGTPAYAAPELLmgyRGDGVTDKShwlcatvDVWALGASLVEMLCGEPPFRGDCF-EXLVRNVRDLRYELPSYVP-LELRLLIDSMLQLHPTDRASVAE 734
                 5789******99..667789************966************999.9*************998733678*************************************998875..5799*****97525555554..........477*********9877799****887555566699999****************986.5566777777888887763.56666777777777777776665 PP

>> TIGR03724  arch_bud32: Kae1-associated kinase Bud32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.2   0.0   6.2e-09   8.5e-06      42     137 ..     520     627 ..     506     635 .. 0.78

  Alignments for each domain:
  == domain 1    score: 23.2 bits;  conditional E-value: 6.2e-09
   TIGR03724  42 eRtrkEarllseakkagvntPvvydvdp.eekkivmeyiegkklkdlleekel.........ellkevGelvgklHkagivhgDlttsNiivk..ddklyliDfGLgk 137
                 +R   E++++++++ +   + +v  +d  ++  ivme+++g  l   ++++ +         +++ ++  ++   H +g +hgD+ ++N++++   d+++l+D G ++
  MMETSP1137-20121227|7854_1 520 DRIMWEVHVMRHLAGHPHIAKLVDVIDLtDAVYIVMERVDGPCLLSFIRRQPQgrlepevarRFFCQMLSALKFTHANGYIHGDVKPENVRLTstCDSAVLVDWGFAQ 627
                 566667777777766655555555555414578****************98889999977776777777888888*****************633799*******997 PP

>> TIGR01173  glmU: UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.9   0.0   1.1e-05     0.016      22     116 ..      45     144 ..      35     163 .. 0.77

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 1.1e-05
   TIGR01173  22 Lhelagkpmlehvieaarklsaekivvvlghgaeevkealkees....vkfvlqee.qlg..TghAvkqalkalseeeeevlvlygDvPLisketleklles 116
                 L ++  +p++ hv+   +++  e+ vv lg+ga+++ e+++++     v+fv  +e   g   ++ +++a +a++ ++e +l++ +D  L +   l+k+ + 
  MMETSP1137-20121227|7854_1  45 LSHIDMRPLIIHVLRGLQRVGIERTVVALGQGANAIVESVRRHPfnmqVDFVWGNEfAWGsaLANSIMAARSAFQ-DNEPLLIVRSDY-LFDWRLLQKMATV 144
                 778899**********************************98876666667765552445335677999999999.99999**99996.6666666666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (863 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       171  (0.041687); expected 82.0 (0.02)
Passed bias filter:                      105  (0.0255973); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.62u 0.15s 00:00:00.77 Elapsed: 00:00:00.71
# Mc/sec: 1604.32
//
Query:       MMETSP1137-20121227|7855_1  [L=95]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (95 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        38  (0.00926377); expected 82.0 (0.02)
Passed bias filter:                       28  (0.00682594); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.30
# Mc/sec: 417.97
//
Query:       MMETSP1137-20121227|7856_1  [L=116]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.6e-38  128.8   2.8    3.2e-38  128.5   1.9    1.1  1  TIGR01080 rplX_A_E: ribosomal protein L24
    2.9e-06   25.5   6.6    2.2e-05   22.7   4.5    2.1  1  TIGR01079 rplX_bact: ribosomal protein L24


Domain annotation for each model (and alignments):
>> TIGR01080  rplX_A_E: ribosomal protein L24
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  128.5   1.9   1.5e-41   3.2e-38      23     115 ..       1      92 [.       1      93 [. 0.99

  Alignments for each domain:
  == domain 1    score: 128.5 bits;  conditional E-value: 1.5e-41
   TIGR01080  23 lsapLskeLrekygkralpvrkgdkvrilrGdfkGkeGkvlkvdlkryriyvegvtkekvdGtevavpihpsnvmiiklklddekrkkllerk 115
                 +s+ Ls eLr+ky +r++pvrk+d+v ++rG++kG+eGkv++ ++k+++i+++++t+ek+ G++v+v+ihps+ +i+klkld++ rk++lerk
  MMETSP1137-20121227|7856_1   1 MSSALSSELRKKYHVRSMPVRKDDEVSVVRGTYKGREGKVIQCYRKKWVIHIDRITREKQSGATVQVGIHPSKCVITKLKLDKD-RKNILERK 92 
                 89**********************************************************************************.*******8 PP

>> TIGR01079  rplX_bact: ribosomal protein L24
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.7   4.5   1.1e-08   2.2e-05       3      47 ..      19      60 ..      17     115 .. 0.66

  Alignments for each domain:
  == domain 1    score: 22.7 bits;  conditional E-value: 1.1e-08
   TIGR01079  3 kikkgDtVlvisGkdkGkkGkvlkvlpkkdkviVegvnlvkkhvk 47
                 ++k+D+V v++G  kG++Gkv++ ++kk  + ++ +   +++++
  MMETSP1137-20121227|7856_1 19 PVRKDDEVSVVRGTYKGREGKVIQCYRKKWVIHIDRI---TREKQ 60
                69*************************8544334433...33333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (116 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       131  (0.0319356); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.16u 0.16s 00:00:00.32 Elapsed: 00:00:00.34
# Mc/sec: 450.32
//
Query:       MMETSP1137-20121227|7857_1  [L=1102]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1102 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       106  (0.0258411); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.64u 0.16s 00:00:00.80 Elapsed: 00:00:00.74
# Mc/sec: 1965.57
//
Query:       MMETSP1137-20121227|7858_1  [L=69]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (69 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        36  (0.00877621); expected 82.0 (0.02)
Passed bias filter:                       26  (0.00633837); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:00.50
# Mc/sec: 182.14
//
Query:       MMETSP1137-20121227|7859_1  [L=589]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.4e-78  259.4   0.5    1.4e-72  242.4   0.2    2.1  2  TIGR03156 GTP_HflX: GTP-binding protein HflX
    3.3e-07   27.5   0.1    0.00048   17.1   0.0    2.2  2  TIGR02729 Obg_CgtA: Obg family GTPase CgtA
    9.2e-07   25.8   0.1      3e-05   20.9   0.0    2.1  2  TIGR03918 GTP_HydF: [FeFe] hydrogenase H-cluster maturation GTPase HydF
    2.8e-06   24.4   0.0     0.0006   16.8   0.0    2.1  2  TIGR03594 GTPase_EngA: ribosome-associated GTPase EngA
    3.2e-05   21.2   0.0    0.00085   16.6   0.0    2.2  2  TIGR00436 era: GTP-binding protein Era
  ------ inclusion threshold ------
      0.026   12.0   0.1        1.7    6.1   0.0    2.2  2  TIGR03598 GTPase_YsxC: ribosome biogenesis GTP-binding protein YsxC


Domain annotation for each model (and alignments):
>> TIGR03156  GTP_HflX: GTP-binding protein HflX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   2.2e-06    0.0015       1      63 [.      92     155 ..      92     159 .. 0.91
   2 !  242.4   0.2     2e-75   1.4e-72      68     350 ..     197     512 ..     182     513 .. 0.87

  Alignments for each domain:
  == domain 1    score: 15.3 bits;  conditional E-value: 2.2e-06
   TIGR03156   1 rallvgvelekekeeeesleEleeLaeaa.gvevvesvtqkrekvdpktligkGkveeiaelve 63 
                 r+++v+ ++ +++e+ e leE e L+ea+ g +v++s + k +++ ++t++g G+  ++ e+++
  MMETSP1137-20121227|7859_1  92 RVVIVQPHAGSSQETFEALEEAEGLVEAVqGWRVIGSEIIKVKRPGSRTYLGDGQCAKLGEVIN 155
                 6899999999999999***********984689***********************99988776 PP

  == domain 2    score: 242.4 bits;  conditional E-value: 2e-75
   TIGR03156  68 dlvifddeLspaQernlekalevkviDRteLiLdIFaqrArtkegklqVelAqlkyllprlvrkgthlsrqkgGiGtr.GpGEtklEtdrRlirerikklkkelekvekqreeq......rkkrkksevptvalvGYTNaGKstllnaltka...................evlaedklFATLdpttrrlklpeeeevlltDTVGFirkLPheLveaFkaTLeevaeadlllhvvDasdeeaeeqieaveevLeelgaeei..pvllvlNkidkleeeeleeleekk.....eeavlvsAkkgegleeLleaieea 350
                 ++ +  ++L+p Q+++l+++++v v+DR  ++L+IF +rA+++e+ +q elA+l ++++rl+ +    s+q+gG  tr G GE+++E+ rR++ +r + lkkel++  ++r+++      r+    s++ +valvGYTNaGKs  +na  +                    +  a+d lFA Ld+ tr  +lp  + vl+ DTVGFi++L h+Lv  F aTLee+ + d+l+hv+D+s+++a +q ++ve++L++lg+     +++ v+Nk d+l+ +e    ee++     ++++l sA k++g+e+L+++i+++
  MMETSP1137-20121227|7859_1 197 SVFVNTKSLAPHQQQHLQDEWGVPVLDRFMVVLQIFKNRATSAEATIQLELAELAFRRSRLSASDAGYSQQRGGTATRgGGGEQQIELSRRTLLRRETLLKKELARAVESRAKRgsvireREINLGSRLSRVALVGYTNAGKSLSTNASQRWlqntppkqcgdgvpllfirRERAQDALFASLDTCTRVGHLPGVNAVLFVDTVGFIKDLAHSLVRCFNATLEEAVHCDVLVHVIDVSNRAAYAQKRSVEQTLADLGTLPPvsHRIDVYNKSDRLSAKERLCWEESEaaaegTTRILCSALKSDGIERLQAEIARR 512
                 56667789********************************************************************996789**********************99888777541111112223345699*************99998776556679999**********9999***********************************************************************************97654599**********9544333322222334467******************9986 PP

>> TIGR02729  Obg_CgtA: Obg family GTPase CgtA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.3   0.0   0.00033      0.23     137     171 ..     306     339 ..     295     347 .. 0.82
   2 !   17.1   0.0   7.1e-07   0.00048     228     328 ..     416     513 ..     384     514 .. 0.79

  Alignments for each domain:
  == domain 1    score: 8.3 bits;  conditional E-value: 0.00033
   TIGR02729 137 rkaekGeegeerelkleLklladvglvGlpnaGkS 171
                 ++a++G+  +ere++l    l+ v+lvG+ naGkS
  MMETSP1137-20121227|7859_1 306 SRAKRGSVIREREINLGS-RLSRVALVGYTNAGKS 339
                 567889999999999985.589************9 PP

  == domain 2    score: 17.1 bits;  conditional E-value: 7.1e-07
   TIGR02729 228 eFLkHiertrvllhlidlseedekdpvedleviekeLkkyseeLaekpelvvlnkidlleeeeleellkelkeelekkvlaisaltkegleellkkllell 328
                   L     + vl+h+id+s+     ++++ + +e+ L+   +     +++ v nk d l+++e     ++ +++ +++ +  sal+++g+e+l +++++ l
  MMETSP1137-20121227|7859_1 416 ATLEEAVHCDVLVHVIDVSNR---AAYAQKRSVEQTLADLGTLPPVSHRIDVYNKSDRLSAKERLCWEESEAAAEGTTRILCSALKSDGIERLQAEIARRL 513
                 45666678***********99...778888889999999888777889999*********98888888877777799999***************998866 PP

>> TIGR03918  GTP_HydF: [FeFe] hydrogenase H-cluster maturation GTPase HydF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.0     0.014       9.7       8      26 ..     326     344 ..     320     348 .. 0.83
   2 !   20.9   0.0   4.4e-08     3e-05      47     172 ..     383     518 ..     377     526 .. 0.75

  Alignments for each domain:
  == domain 1    score: 2.7 bits;  conditional E-value: 0.014
   TIGR03918   8 lhialfGrrNaGKSsliNa 26 
                  ++al+G +NaGKS   Na
  MMETSP1137-20121227|7859_1 326 SRVALVGYTNAGKSLSTNA 344
                 579***********88886 PP

  == domain 2    score: 20.9 bits;  conditional E-value: 4.4e-08
   TIGR03918  47 ekamEllplGpvvliDTaGldDegeLGelR.vektrevlektdlallvvdaeaeleeleeelleelkek..kip....vivvlnkidlkeeeke...keklekkkeeevvlvsakekegieelkealiellpeeae 172
                 ++   l  + +v+++DT G+  + + + +R  + t e   ++d+ + v+d +++   ++++ +e+  +   ++p     i v+nk+d  +++++   +e++ ++++++ +l+sa +++gie+l+++++++l+++ +
  MMETSP1137-20121227|7859_1 383 TRVGHLPGVNAVLFVDTVGFIKDLAHSLVRcFNATLEEAVHCDVLVHVIDVSNRAAYAQKRSVEQTLADlgTLPpvshRIDVYNKSDRLSAKERlcwEESEAAAEGTTRILCSALKSDGIERLQAEIARRLQKSEK 518
                 55556777889********755555555552688999999**********99877776666666544331233312225789*****999988888667777888999**********************988754 PP

>> TIGR03594  GTPase_EngA: ribosome-associated GTPase EngA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.5   0.0    0.0023       1.5     173     193 ..     323     343 ..     278     347 .. 0.67
   2 !   16.8   0.0   8.7e-07    0.0006      49     169 ..     393     522 ..     372     537 .. 0.73

  Alignments for each domain:
  == domain 1    score: 5.5 bits;  conditional E-value: 0.0023
   TIGR03594 173 eepikiaiiGrpNvGKStLvN 193
                 ++  ++a++G  N+GKS  +N
  MMETSP1137-20121227|7859_1 323 SRLSRVALVGYTNAGKSLSTN 343
                 446799**********97666 PP

  == domain 2    score: 16.8 bits;  conditional E-value: 8.7e-07
   TIGR03594  49 efiliDTgGl.eeeedelekeireqaelaieeadvilfvvdaregl.teeDeeiaklLrksk.....kpvilvvNKvdnkkeeae.aaefyslGlge..vlaiSaehgrgikdLldeileelpeeeeeeee 169
                  + ++DT G+ ++ +++l +  ++  e a+ ++dv++ v+d+ ++   ++ +++ ++L   +     ++ i v NK+d+ +++++ ++e  +   +    +  Sa +++gi++L  ei ++l+++e+++++
  MMETSP1137-20121227|7859_1 393 AVLFVDTVGFiKDLAHSLVRCFNATLEEAV-HCDVLVHVIDVSNRAaYAQKRSVEQTLADLGtlppvSHRIDVYNKSDRLSAKERlCWEESEAAAEGttRILCSALKSDGIERLQAEIARRLQKSEKRASR 522
                 567899999955555556666666666665.68999999999886515667788899998886634445577999999997666645555444443311567799999******99999999998876554 PP

>> TIGR00436  era: GTP-binding protein Era
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.0     0.029        20       2      15 ..     327     340 ..     326     346 .. 0.86
   2 !   16.6   0.0   1.2e-06   0.00085      48     169 ..     392     519 ..     384     526 .. 0.74

  Alignments for each domain:
  == domain 1    score: 2.3 bits;  conditional E-value: 0.029
   TIGR00436   2 fvailGrpnvGKST 15 
                 +va++G +n+GKS 
  MMETSP1137-20121227|7859_1 327 RVALVGYTNAGKSL 340
                 79**********95 PP

  == domain 2    score: 16.6 bits;  conditional E-value: 1.2e-06
   TIGR00436  48 sqiifiDtPGlhek.khklnellvkeirkalsevdlilfvvdsdeknke..dellleklqklkapvvl.....alnkldnkekdkllelidkeasllefkeiveisalkgenveelkaiveaklregpfy 169
                 + ++f+Dt G+ ++  h+l +  +   ++a++  d+++ v+d +++ +    + + + l +l +   +     + nk d+   +++l  +++ea  +   + +  salk + +e l+a + ++l++++ +
  MMETSP1137-20121227|7859_1 392 NAVLFVDTVGFIKDlAHSLVRCFNATLEEAVH-CDVLVHVIDVSNRAAYaqKRSVEQTLADLGTLPPVshridVYNKSDRLSAKERLCWEESEAAAEGT-TRILCSALKSDGIERLQAEIARRLQKSEKR 519
                 5689*********99***************97.8********987765444788999998887644431000123444444444444444444444444.66779********************98876 PP

>> TIGR03598  GTPase_YsxC: ribosome biogenesis GTP-binding protein YsxC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   0.0    0.0025       1.7      18      37 ..     325     344 ..     314     349 .. 0.86
   2 ?    3.6   0.0     0.015        10      96     185 ..     419     509 ..     402     510 .. 0.67

  Alignments for each domain:
  == domain 1    score: 6.1 bits;  conditional E-value: 0.0025
   TIGR03598  18 lpeiafaGrSNvGKSsliNa 37 
                 l+ +a++G+ N+GKS   Na
  MMETSP1137-20121227|7859_1 325 LSRVALVGYTNAGKSLSTNA 344
                 678************87775 PP

  == domain 2    score: 3.6 bits;  conditional E-value: 0.015
   TIGR03598  96 ekrenLkgvvllvDirhelkelDlellellkeakipvlvvltKaDklkkselkkalkkvk.kelkkeeekvevllfSslkkegieelkael 185
                 e+  +   +v ++D+  +     ++ +e + +   ++  v  ++D ++ks++ +a++++  +e +  +e ++ +l+S+lk  gie+l+ae+
  MMETSP1137-20121227|7859_1 419 EEAVHCDVLVHVIDVSNRAAYAQKRSVEQTLADLGTLPPVSHRIDVYNKSDRLSAKERLCwEESEAAAEGTTRILCSALKSDGIERLQAEI 509
                 555556667777777777666666666666666666666777777777766655555544134444466678999************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (589 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       106  (0.0258411); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.42u 0.16s 00:00:00.57 Elapsed: 00:00:00.43
# Mc/sec: 1807.94
//
Query:       MMETSP1137-20121227|7860_1  [L=243]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.9e-15   54.3   0.1    5.2e-15   53.5   0.1    1.4  1  TIGR02349 DnaJ_bact: chaperone protein DnaJ
    1.3e-08   31.5   0.0    1.8e-08   31.1   0.0    1.1  1  TIGR03835 termin_org_DnaJ: terminal organelle assembly protein TopJ


Domain annotation for each model (and alignments):
>> TIGR02349  DnaJ_bact: chaperone protein DnaJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.5   0.1   2.5e-18   5.2e-15       5      55 ..       8      60 ..       6      66 .. 0.94

  Alignments for each domain:
  == domain 1    score: 53.5 bits;  conditional E-value: 2.5e-18
   TIGR02349  5 iLgvskdAseeeikkAYrklakkyHPDrnkg..ekeaeekfkeineAyevLsd 55
                 Lg+s+ As+ eik A+r lak++HPDr++g  +k+aee+fk+i+ Ay+ Ls 
  MMETSP1137-20121227|7860_1  8 ALGLSHGASHVEIKAAFRALAKEWHPDRHHGiaKKNAEERFKQIQSAYQSLST 60
                69****************************9999***************9985 PP

>> TIGR03835  termin_org_DnaJ: terminal organelle assembly protein TopJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.1   0.0   8.8e-12   1.8e-08       8      56 ..       9      60 ..       6      65 .. 0.90

  Alignments for each domain:
  == domain 1    score: 31.1 bits;  conditional E-value: 8.8e-12
   TIGR03835  8 LgidrDadeqeikkafrkLakkyhPDrnka...adaakifaeineandvLsn 56
                Lg++  a + eik afr Lak +hPDr +     +a++ f+ i  a++ Ls 
  MMETSP1137-20121227|7860_1  9 LGLSHGASHVEIKAAFRALAKEWHPDRHHGiakKNAEERFKQIQSAYQSLST 60
                899************************98553589**************995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (243 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       106  (0.0258411); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.23u 0.15s 00:00:00.38 Elapsed: 00:00:00.26
# Mc/sec: 1233.59
//
Query:       MMETSP1137-20121227|7861_1  [L=414]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.7e-91  303.9   0.0    4.6e-91  303.1   0.0    1.3  1  TIGR01136 cysKM: cysteine synthases
    1.1e-90  301.8   0.0    1.7e-90  301.1   0.0    1.3  1  TIGR01139 cysK: cysteine synthase A
    1.4e-74  249.3   0.0    2.3e-74  248.5   0.0    1.3  1  TIGR01137 cysta_beta: cystathionine beta-synthase
    6.9e-67  223.8   0.1    1.1e-58  196.9   0.0    2.0  2  TIGR01138 cysM: cysteine synthase B
    3.6e-52  175.1   0.0    6.6e-52  174.3   0.0    1.3  1  TIGR03945 PLP_SbnA_fam: 2,3-diaminopropionate biosynthesis protein SbnA
    2.4e-12   44.1   0.2    2.9e-12   43.8   0.1    1.2  1  TIGR01124 ilvA_2Cterm: threonine ammonia-lyase, biosynthetic
    1.5e-11   41.9   0.1    1.8e-09   35.1   0.0    2.1  2  TIGR00260 thrC: threonine synthase
    3.8e-10   36.9   0.9    4.1e-09   33.5   0.0    2.1  2  TIGR02079 THD1: threonine dehydratase
    1.3e-07   28.8   1.1    6.1e-07   26.6   0.7    1.9  1  TIGR01127 ilvA_1Cterm: threonine dehydratase
    1.7e-05   21.7   1.4    2.8e-05   21.0   0.2    1.9  2  TIGR02991 ectoine_eutB: ectoine utilization protein EutB
    0.00017   18.3   0.2     0.0078   12.8   0.1    2.1  2  TIGR01415 trpB_rel: pyridoxal-phosphate dependent TrpB-like enzyme
    0.00027   17.7   0.4     0.0063   13.1   0.0    2.1  2  TIGR03844 cysteate_syn: cysteate synthase
    0.00033   17.1   0.1    0.00093   15.7   0.0    1.7  1  TIGR03528 2_3_DAP_am_ly: diaminopropionate ammonia-lyase
    0.00053   16.7   0.1     0.0013   15.4   0.0    1.6  2  TIGR01747 diampropi_NH3ly: diaminopropionate ammonia-lyase family
  ------ inclusion threshold ------
      0.011   12.9   0.0      0.023   11.9   0.0    1.5  1  TIGR01275 ACC_deam_rel: pyridoxal phosphate-dependent enzymes, D-cysteine desulfhydrase family


Domain annotation for each model (and alignments):
>> TIGR01136  cysKM: cysteine synthases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  303.1   0.0   1.7e-93   4.6e-91       2     299 .]      60     375 ..      59     375 .. 0.89

  Alignments for each domain:
  == domain 1    score: 303.1 bits;  conditional E-value: 1.7e-93
   TIGR01136   2 eeliGntPlvrln.ls.eelk.aevlvKlEsrnPsgSvKdRialsmildAekrgllkkgk.tiieatSGNtGiaLAmvaaakgyklilvmpetmsl.ERrkllkayGaelvlteaeegmkgaiekakelae..eepekyvllkqfeNpaNpeaHrkttgpEilkdtdgkidafvagvGtgGtitGvgrvlkekkpnvkivavePaespvlsegkpgphkiqgigag....fiPkildee........lldevikvededaietarrlakeegilvGiSsGaavaaalkvakklekedkkivvilpdagerYLstelf 299
                 +eliG+tPlv l+ +  +++k a+vl+KlE+ nP+ SvKdRia +m+++Ae+rg++ +g+ ti+eatSGNtGi+LAmv+aakgyk i++mp+  s+ ER  + + +Ga++ lt+ + g+++ ++  +++ +  ++p+++  ++qf+N +Np+ H +ttgpEi+++t g++d fvag GtgGt+ Gvg +lke++ ++k v veP+es vl+++ p++h i gigag    fi ++  ++         +de  + ++e+a+++a rla+eeg+lvG S+Gaa+  a +va + e+++k++vv++++++ rY++ +l+
  MMETSP1137-20121227|7861_1  60 TELIGSTPLVALHrVPgPDCKaARVLAKLEFANPGDSVKDRIAKAMVEQAENRGEIAPGRtTIVEATSGNTGIGLAMVCAAKGYKCIIIMPQVPSMkERYLICRKFGAHVHLTAFAPGATAFVNMMDHMSAllAQPDHW-SPQQFSNRDNPQCHIHTTGPEIWQQTGGNVDYFVAGAGTGGTMAGVGAYLKEQNSQLKNVLVEPTESRVLTGAFPDQHSIVGIGAGvplpFIEALSAQQpwsdaprgHVDEFASATSEEAMAWADRLAAEEGMLVGPSAGAACKVACQVAARDEAAGKTVVVVFASSAVRYMTHPLW 375
                 799**********6431344469************************************869******************************988638888889***************99998888776532568888.9************************************************************************************933333333322222222223369***************************************************************99886 PP

>> TIGR01139  cysK: cysteine synthase A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  301.1   0.0   6.4e-93   1.7e-90       2     298 .]      60     375 ..      59     375 .. 0.90

  Alignments for each domain:
  == domain 1    score: 301.1 bits;  conditional E-value: 6.4e-93
   TIGR01139   2 seliGntPlvrLnlaee...akaevlvkleslnPsssvkdrialamiedaekegllkkgk.tiveatsGntGialamvaaargykliltmpetmsl.errkllkayGaelvLtdgaegmkgaiekaeelve..etpnkylllkqfenpanpeihrkttapeilkdldgkldafvagvGtGGtitGvgevlkekkpdikvvavePaespvlsggkpgphkiqGigag....fiPkvLdke........videvikvsdeeaietarrlakeeGilvGissGaavaaalkvakkle.kdkkivvilpdtgerYlstaLf 298
                 +eliG+tPlv L+++ +   ++a+vl+kle+ nP+ svkdria am+e+ae++g + +g+ tiveatsGntGi+lamv+aa+gyk i++mp+  s+ er  + + +Ga++ Lt  a g ++ ++  +++ +  ++p+++  ++qf+n  np++h +tt+pei++++ g++d fvag GtGGt++Gvg +lke+++++k v veP+es vl+g+ p++h i Gigag    fi +   ++         +de  + ++eea++ a rla+eeG+lvG s+Gaa+  a +va + e ++k++vv++++++ rY++ +L+
  MMETSP1137-20121227|7861_1  60 TELIGSTPLVALHRVPGpdcKAARVLAKLEFANPGDSVKDRIAKAMVEQAENRGEIAPGRtTIVEATSGNTGIGLAMVCAAKGYKCIIIMPQVPSMkERYLICRKFGAHVHLTAFAPGATAFVNMMDHMSAllAQPDHW-SPQQFSNRDNPQCHIHTTGPEIWQQTGGNVDYFVAGAGTGGTMAGVGAYLKEQNSQLKNVLVEPTESRVLTGAFPDQHSIVGIGAGvplpFIEALSAQQpwsdaprgHVDEFASATSEEAMAWADRLAAEEGMLVGPSAGAACKVACQVAARDEaAGKTVVVVFASSAVRYMTHPLW 375
                 89***********55432225789***********************************879******************************998637778889*********99999999999888775433789888.9************************************************************************************9555555443322222222222689****************************************99998******************9997 PP

>> TIGR01137  cysta_beta: cystathionine beta-synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  248.5   0.0   8.4e-77   2.3e-74       2     308 ..      56     372 ..      55     385 .. 0.84

  Alignments for each domain:
  == domain 1    score: 248.5 bits;  conditional E-value: 8.4e-77
   TIGR01137   2 adnildliGntPlvrlnkvsk.glk.aevlakveffnaGGsvkdrialrmiedaeksGrlkpg.dtliePtsGntGiGlalvaaikGykciivlPekvs.eekvdvlkalGaeivrt...PtaaafdsPesyigvakrlek..eipgavildqyanasnPlahydttgeeileqlegkldalvagvGtGGtitGiarklkekedkvrivGadPeGs.ilaepeelnktektdykveGiGy....dfiPtvld........rkvvdeiiktddkesfkmarrlikeegllvgGssGsavvaalkvaeeelkeddvivvllpdsirnyltk 308
                 a ++ +liG tPlv+l++v+  + k a+vlak+ef n+G svkdria+ m+e+ae+ G++ pg  t++e tsGntGiGla+v+a kGykcii++P+  s +e+  + + +Ga +  t   P a+      +++++ ++++     p+ + + q++n +nP++h +ttg+ei++q+ g++d +vag+GtGGt++G++ +lke++++++ v ++P  s +l+++      ++  + + GiG      fi +           r  vde+  +  +e++ +a rl++eeg+lvg s+G+a  +a +va+++   ++ +vv+++ s   y+t 
  MMETSP1137-20121227|7861_1  56 ATDVTELIGSTPLVALHRVPGpDCKaARVLAKLEFANPGDSVKDRIAKAMVEQAENRGEIAPGrTTIVEATSGNTGIGLAMVCAAKGYKCIIIMPQVPSmKERYLICRKFGAHVHLTafaPGAT------AFVNMMDHMSAllAQPDHWSPQQFSNRDNPQCHIHTTGPEIWQQTGGNVDYFVAGAGTGGTMAGVGAYLKEQNSQLKNVLVEPTESrVLTGA----FPDQ--HSIVGIGAgvplPFIEALSAqqpwsdapRGHVDEFASATSEEAMAWADRLAAEEGMLVGPSAGAACKVACQVAARDEAAGKTVVVVFASSAVRYMTH 372
                 6799***************987765268***********************************999******************************98835777889******97762224444......45555555443114599******************************************************************988355544....2233..44555554111156654332112222237789*******************************************999999**************97 PP

>> TIGR01138  cysM: cysteine synthase B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  196.9   0.0   3.9e-61   1.1e-58       2     206 ..      59     270 ..      58     280 .. 0.91
   2 !   25.1   0.0     9e-09   2.5e-06     223     288 ..     306     373 ..     296     375 .. 0.86

  Alignments for each domain:
  == domain 1    score: 196.9 bits;  conditional E-value: 3.9e-61
   TIGR01138   2 ilklvGntplvrlkrllpe..edsevlvklegnnpaGsvkdrpalsmiveaekrGeikeGdv.lieatsGntGialamvaalkGykvkllmpdnvs.eerkaalkayGaelilvdkeeGmeGardlarelvrkgeek...lldqfnnpdnpkahytstGieiwqqtkGrithfvsslGttGtimGvsrflkeqnpavqivGlqpaegsaieG 206
                 +++l+G tplv l+r+++   + + vl+kle  np+ svkdr a +m+ +ae rGei +G + ++eatsGntGi lamv+a+kGyk +++mp+  s +er  + + +Ga++ l+    G    +++++++     +      +qf+n dnp+ h ++tG+eiwqqt+G++ +fv++ Gt+Gt+ Gv+ +lkeqn +++ v ++p+e+  + G
  MMETSP1137-20121227|7861_1  59 VTELIGSTPLVALHRVPGPdcKAARVLAKLEFANPGDSVKDRIAKAMVEQAENRGEIAPGRTtIVEATSGNTGIGLAMVCAAKGYKCIIIMPQVPSmKERYLICRKFGAHVHLTAFAPGATAFVNMMDHMSALLAQPdhwSPQQFSNRDNPQCHIHTTGPEIWQQTGGNVDYFVAGAGTGGTMAGVGAYLKEQNSQLKNVLVEPTESRVLTG 270
                 5789************866478899***********************************85278***************************9755389999*****************999999999887643332224889*************************************************************99877666 PP

  == domain 2    score: 25.1 bits;  conditional E-value: 9e-09
   TIGR01138 223 lvdrvvdveqedaediarelakkegifvGvssGgavaaalrlarelek..avvvaiicdrGdrylstg 288
                  vd+      e+a  +a +la +eg++vG s+G+a   a ++a   e     vv +++    ry++  
  MMETSP1137-20121227|7861_1 306 HVDEFASATSEEAMAWADRLAAEEGMLVGPSAGAACKVACQVAARDEAagKTVVVVFASSAVRYMTHP 373
                 6899999999**************************9999997655443467899999999***9875 PP

>> TIGR03945  PLP_SbnA_fam: 2,3-diaminopropionate biosynthesis protein SbnA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  174.3   0.0   2.4e-54   6.6e-52       2     295 ..      60     370 ..      59     372 .. 0.85

  Alignments for each domain:
  == domain 1    score: 174.3 bits;  conditional E-value: 2.4e-54
   TIGR03945   2 lsligntplvkleklfed..ekvelfaKlEglnpagSvKdrtAlallekaikegeikpg.ttiiESsSGnlaiaLamvcaalGlkficvvDpkiseanlk.llralgaevevveekdetggyLkaRlarvrellaeipdavwlNQYaneanaeahyettaeeileelk.evdylfvgvsttGtlaGvarrlrekspevkvvavDavGS.vifggepgkRlipGlGasvvpelld............eslidevvkvseletvaacrelleregilaGgSsGtvvaavkkllak.ieegstvvailpDrGerYl 295
                 ++lig tplv l+++     + +++ aKlE  np+ SvKdr A+a++e+a+++gei pg tti+E +SGn +i+Lamvcaa+G+k i+++ +  s +++  + r +ga+v++      +  +++  ++++ +lla+ pd   + Q++n +n++ h++tt+ ei ++   +vdy+++g++t+Gt+aGv  +l+e+++++k v v+ + S v+ g+ p +  i G+Ga+v  ++++            + ++de+ + + +e++a + +l+++eg+l+G S+G++   + +++a+  ++g+tvv++++    rY+
  MMETSP1137-20121227|7861_1  60 TELIGSTPLVALHRVPGPdcKAARVLAKLEFANPGDSVKDRIAKAMVEQAENRGEIAPGrTTIVEATSGNTGIGLAMVCAAKGYKCIIIMPQVPSMKERYlICRKFGAHVHLTAFAPGATAFVNM-MDHMSALLAQ-PDHWSPQQFSNRDNPQCHIHTTGPEIWQQTGgNVDYFVAGAGTGGTMAGVGAYLKEQNSQLKNVLVEPTESrVLTGAFPDQHSIVGIGAGVPLPFIEalsaqqpwsdapRGHVDEFASATSEEAMAWADRLAAEEGMLVGPSAGAACKVACQVAARdEAAGKTVVVVFASSAVRYM 370
                 6899**********8643225689**********************************989*************************9988665555444415599******99998888888865.8888888875.78899**************************9**********************************988774788999***********9976665411111111111134677888888899999******************98876666555527888********9999997 PP

>> TIGR01124  ilvA_2Cterm: threonine ammonia-lyase, biosynthetic
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.8   0.1     1e-14   2.9e-12      10     212 ..      58     273 ..      50     369 .. 0.80

  Alignments for each domain:
  == domain 1    score: 43.8 bits;  conditional E-value: 1e-14
   TIGR01124  10 rvyeaavetplekaakls..erlknrvllkredlqpvfsfklrGaynkmaqlsae.qkakG...viaasaGnhaqGvalsakklGvkavivmpettpeik..vdavkafGgevvlh....G.enydeakakalelaqekgltfiapfddpl.viaGqGtvalellrqveedldavfvpvGGGGliaGvaalvkqllpeikvigveaedsaalkqale 212
                  v e    tpl   +++   +    rvl k e  +p  s k r a +++ q  +  + a G   ++ a++Gn   G+a+ ++  G k +i+mp+  p++k     +++fG++v l     G +++ +  ++  +l  + +    + f + +       t + e+ +q+  ++d+     G GG +aGv a++k+   ++k + ve+++s +l+ a+ 
  MMETSP1137-20121227|7861_1  58 DVTELIGSTPLVALHRVPgpDCKAARVLAKLEFANPGDSVKDRIAKAMVEQAENRgEIAPGrttIVEATSGNTGIGLAMVCAAKGYKCIIIMPQV-PSMKerYLICRKFGAHVHLTafapGaTAFVNMMDHMSALLAQPDHWSPQQFSNRDnPQCHIHTTGPEIWQQTGGNVDYFVAGAGTGGTMAGVGAYLKEQNSQLKNVLVEPTESRVLTGAFP 273
                 566666667776666664214456799**********************998764145555444899**************************85.6666115689*******99733333245777777777766555544444554443044566899**************9999********************************9988765 PP

>> TIGR00260  thrC: threonine synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.1   0.0   6.4e-12   1.8e-09      21     106 ..      64     151 ..      48     163 .. 0.84
   2 !    4.9   0.0    0.0097       2.7     269     314 ..     307     351 ..     235     371 .. 0.81

  Alignments for each domain:
  == domain 1    score: 35.1 bits;  conditional E-value: 6.4e-12
   TIGR00260  21 gstelfrspkla.eevgaenlyvkelfhgPtlaFKDrglqfvavlltkalelgne.....tvlcAtsGdtgaaaaealagkanvkvvvLyPk 106
                 gst+l++ ++++    +a ++  k +f++P  + KDr       ++++a ++g+      t++ AtsG+tg  +a +  + ++ k+++++P+
  MMETSP1137-20121227|7861_1  64 GSTPLVALHRVPgPDCKAARVLAKLEFANPGDSVKDRI---AKAMVEQAENRGEIapgrtTIVEATSGNTGIGLA-MVCAAKGYKCIIIMPQ 151
                 7889999999885556668*******************...5566677777776667777***************.9**************7 PP

  == domain 2    score: 4.9 bits;  conditional E-value: 0.0097
   TIGR00260 269 ledlkesvsdeeileaikklaeeegyllephtavavaalkklvekg 314
                 +++  +s+++ee +    +la+eeg+l+ p +++a ++  + ++ +
  MMETSP1137-20121227|7861_1 307 VDEF-ASATSEEAMAWADRLAAEEGMLVGPSAGAACKVACQVAARD 351
                 4444.58999*************************99988888777 PP

>> TIGR02079  THD1: threonine dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.5   0.0   1.5e-11   4.1e-09      10     217 ..      59     275 ..      52     282 .. 0.73
   2 ?    1.8   0.1     0.065        18     268     305 ..     326     365 ..     307     370 .. 0.80

  Alignments for each domain:
  == domain 1    score: 33.5 bits;  conditional E-value: 1.5e-11
   TIGR02079  10 lkevvketPlqknerls..ekykaeiylkredlqevrsyklrGaynklkqlsdeel....ekgvvcasaGnhaqGvayacrklgvkgtvfmPvttP.kqkvdkvklfGge.fievilvGdt.fdeaaaaakkavekegktlipPfddkdiieGq.gtvaveileqleeekidlvlvpvGGGGlisGvtsylkekskktkiigvePeGapslkaslkag 217
                 + e++ +tPl   +r+   +   a ++ k e  +   s k r a  +++q  + +       ++v a++Gn   G+a  c + g k  + mP +   k +    + fG + ++     G t f + + +     ++ ++   + f ++d  +    t + ei +q   + +d+ +++ G GG ++Gv++ylke+ ++ k + veP+ +  l+ ++ ++
  MMETSP1137-20121227|7861_1  59 VTELIGSTPLVALHRVPgpDCKAARVLAKLEFANPGDSVKDRIAKAMVEQAENRGEiapgRTTIVEATSGNTGIGLAMVCAAKGYKCIIIMPQVPSmKERYLICRKFGAHvHLTAFAPGATaFVNMMDHMSALLAQPDHWSPQQFSNRDNPQCHiHTTGPEIWQQTGGN-VDYFVAGAGTGGTMAGVGAYLKEQNSQLKNVLVEPTESRVLTGAFPDQ 275
                 5666666666666655322445666777777777777777777777776666554322225689****************************87441555566799997634555566665366666666666666666666778888776654268899*****9986.************************************999998888665 PP

  == domain 2    score: 1.8 bits;  conditional E-value: 0.065
   TIGR02079 268 ynkegivaeP.aGal.siaaleelseeikgktvvcvvsGg 305
                   +eg+++ P aGa   +a+   +++e  gktvv+v + +
  MMETSP1137-20121227|7861_1 326 AAEEGMLVGPsAGAAcKVACQVAARDEAAGKTVVVVFASS 365
                 5678888888567651677777888*********998765 PP

>> TIGR01127  ilvA_1Cterm: threonine dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.6   0.7   2.2e-09   6.1e-07      20     282 ..      87     363 ..      77     371 .. 0.72

  Alignments for each domain:
  == domain 1    score: 26.6 bits;  conditional E-value: 2.2e-09
   TIGR01127  20 klenlqktGsfkirGalnkiaklseeek....krGvvaasaGnhaqGvalaakvfgikakivmPesapl.skvkatksyGaeviLhGa.....dfDeayklaeelaeeegrvfvhafdDefv.iaGqGtlgleiledl.pdvdtvivPvGGGGLisGvasavkklnpevkviGveaeaapslveslkegkik.avesvkti..aDGiavkkpgdltfeivkelvDevvav.deeeiakaillLlerakivaegaGavg.vaavleekvdvkgkkvavvvs 282
                 kle      s k r a   ++++ + ++    +  +v a++Gn   G a+     g k+ i+mP++  + ++    + +Ga+v L  +      f + + + + l ++ ++   + f ++    +   t g ei +++ ++vd  ++  G GG ++Gv + +k++n ++k + ve  ++  l+ ++ +++ +  + +   +   + ++ ++p     +  + +vDe+ +  +ee +a a  l  e   +v  +aGa+  va  ++ + ++ gk+v+vv +
  MMETSP1137-20121227|7861_1  87 KLEFANPGDSVKDRIAKAMVEQAENRGEiapgRTTIVEATSGNTGIGLAMVCAAKGYKCIIIMPQVPSMkERYLICRKFGAHVHLTAFapgatAFVNMMDHMSALLAQPDHWSPQQFSNRDNpQCHIHTTGPEIWQQTgGNVDYFVAGAGTGGTMAGVGAYLKEQNSQLKNVLVEPTESRVLTGAFPDQHSIvGIGAGVPLpfIEALSAQQP---WSDAPRGHVDEFASAtSEEAMAWADRLAAEEGMLVGPSAGAACkVACQVAARDEAAGKTVVVVFA 363
                 55555555566666665555555544432222567999***************************97651567789********986411112466666666666667777777777665431445578999999886369**************************************999999976654303333333311444444444...4467899****987515677888999999999999999999863777788888899999999876 PP

>> TIGR02991  ectoine_eutB: ectoine utilization protein EutB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.0   0.2     1e-07   2.8e-05       9     119 ..      55     172 ..      48     261 .. 0.74
   2 ?   -1.9   0.0         1   2.7e+02     124     154 ..     316     346 ..     306     365 .. 0.61

  Alignments for each domain:
  == domain 1    score: 21.0 bits;  conditional E-value: 1e-07
   TIGR02991   9 aaeriagrveetplvesesls..ellGvpvllklesrqttGsfklrGatnavlslsdaer....aaGvvaastGnhGralayaakkegvravicmselvpqnkvd..eirrlGaevriv 119
                  a+ ++  + +tplv  + +   +    +vl kle  ++  s k r a   v   ++       ++ +v a++Gn G +la   +++g +++i m + vp+ k      r++Ga+v++ 
  MMETSP1137-20121227|7861_1  55 IATDVTELIGSTPLVALHRVPgpDCKAARVLAKLEFANPGDSVKDRIAKAMVEQAENRGEiapgRTTIVEATSGNTGIGLAMVCAAKGYKCIIIMPQ-VPSMKERylICRKFGAHVHLT 172
                 56667777888888887776422556778999****************99998876643322225679***************************98.5665544115699*****986 PP

  == domain 2    score: -1.9 bits;  conditional E-value: 1
   TIGR02991 124 ddaqeeverlvkerGlvmlppfdhadivaGq 154
                 ++a    +rl +e+G+ + p    a  va q
  MMETSP1137-20121227|7861_1 316 EEAMAWADRLAAEEGMLVGPSAGAACKVACQ 346
                 4555556666666666665555555445444 PP

>> TIGR01415  trpB_rel: pyridoxal-phosphate dependent TrpB-like enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.0     0.022       5.9      84     171 ..      81     170 ..      46     183 .. 0.75
   2 !   12.8   0.1   2.9e-05    0.0078     350     402 ..     313     365 ..     302     373 .. 0.86

  Alignments for each domain:
  == domain 1    score: 3.3 bits;  conditional E-value: 0.022
   TIGR01415  84 kariyyksesvsptGshkintaiaqayyakkeGv....krlvtetGaGqWGsalslaaalldlkvkvfmvrvsfkqkpyrkllmelygaevi 171
                  ar+  k e + p  s k   a a +  a + G     ++ + e+ +G  G  l++ +a  + k+ + m +v       r l+ + +ga+v+
  MMETSP1137-20121227|7861_1  81 AARVLAKLEFANPGDSVKDRIAKAMVEQAENRGEiapgRTTIVEATSGNTGIGLAMVCAAKGYKCIIIMPQVPSM--KERYLICRKFGAHVH 170
                 47888888888888887766666655555555532222455679999**********************998643..457788889999886 PP

  == domain 2    score: 12.8 bits;  conditional E-value: 2.9e-05
   TIGR01415 350 ydqeevfeaavlfakaeGivPaPesahaiavaideakkareegkekvilfsls 402
                    ee++++a  +a  eG++  P +  a +va + a + +  gk  v++f+ s
  MMETSP1137-20121227|7861_1 313 ATSEEAMAWADRLAAEEGMLVGPSAGAACKVACQVAARDEAAGKTVVVVFASS 365
                 46799**********************************99999999999876 PP

>> TIGR03844  cysteate_syn: cysteate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.1   0.0   2.3e-05    0.0063     116     185 ..     118     190 ..      94     243 .. 0.79
   2 ?    2.6   0.1     0.036       9.9     110     155 ..     323     369 ..     306     388 .. 0.66

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 2.3e-05
   TIGR03844 116 gkkvlvvasaGntgrafaevsaltgkpvvlvvPe..savdrlwtt.edassvllvtvegdytdaiklaekiaa 185
                 g+ ++v a++Gntg  +a v+a  g+  ++++P+  s  +r  +  +  ++v+l +  +  t  +++ ++++a
  MMETSP1137-20121227|7861_1 118 GRTTIVEATSGNTGIGLAMVCAAKGYKCIIIMPQvpSMKERYLICrKFGAHVHLTAFAPGATAFVNMMDHMSA 190
                 5778999************************998434556666654667788888888887777777777765 PP

  == domain 2    score: 2.6 bits;  conditional E-value: 0.036
   TIGR03844 110 qrlkekgkkvlvvasaGntgrafaevsal...tgkpvvlvvPesavdrl 155
                  rl  +++++lv  saG + +  ++v+a     gk vv+v  +sav r 
  MMETSP1137-20121227|7861_1 323 DRLA-AEEGMLVGPSAGAACKVACQVAARdeaAGKTVVVVFASSAV-RY 369
                 4544.356788899************99622245666666665554.32 PP

>> TIGR03528  2_3_DAP_am_ly: diaminopropionate ammonia-lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   3.4e-06   0.00093     112     167 ..     118     174 ..      98     271 .. 0.84

  Alignments for each domain:
  == domain 1    score: 15.7 bits;  conditional E-value: 3.4e-06
   TIGR03528 112 gditfvtatdGnhGrGvawaanklgqksvvymPkG.saqerlenirkeGaeatitdl 167
                 g  t v at Gn G G+a      g k+++ mP+  s +er    rk Ga++ +t +
  MMETSP1137-20121227|7861_1 118 GRTTIVEATSGNTGIGLAMVCAAKGYKCIIIMPQVpSMKERYLICRKFGAHVHLTAF 174
                 67899****************************9637788999999****9998876 PP

>> TIGR01747  diampropi_NH3ly: diaminopropionate ammonia-lyase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   4.9e-06    0.0013      93     148 ..     118     174 ..      99     205 .. 0.84
   2 ?   -2.1   0.0         1   2.7e+02     212     247 ..     233     266 ..     214     272 .. 0.73

  Alignments for each domain:
  == domain 1    score: 15.4 bits;  conditional E-value: 4.9e-06
   TIGR01747  93 kdatfvtatdGnhGrGvawaaeklGqkavvympkG.saqeraeniekeGaevtitdl 148
                 + +t v at Gn G G+a      G k++++mp+  s +er    +k Ga+v +t +
  MMETSP1137-20121227|7861_1 118 GRTTIVEATSGNTGIGLAMVCAAKGYKCIIIMPQVpSMKERYLICRKFGAHVHLTAF 174
                 468999***************************963667888888999**9998865 PP

  == domain 2    score: -2.1 bits;  conditional E-value: 1
   TIGR01747 212 lqaGvGslaGavlGylveafsenipniivveadkad 247
                   aG G    +v  yl e  ++ +++ ++ve+ ++ 
  MMETSP1137-20121227|7861_1 233 AGAGTGGTMAGVGAYLKE--QNSQLKNVLVEPTESR 266
                 557777666667778866..4556788899998765 PP

>> TIGR01275  ACC_deam_rel: pyridoxal phosphate-dependent enzymes, D-cysteine desulfhydrase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   8.2e-05     0.023     167     303 ..     220     358 ..     213     368 .. 0.61

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 8.2e-05
   TIGR01275 167 iaeqlnlesevkfdsivvaaGsgGtiaGlslGlsaLkeevesvgvavsrfs.....addsdklvnlvkei.leelevkvnseeivelddykgkgyavptsee.leivkkvasleGiiLDPvytgkalaGlideirkkeleekki 303
                 i +q  +    ++d  v  aG+gGt+aG+ + l+  ++++++v v+ + +        d++ +v++  ++ l  +e+  +++        + +++a  tsee +    ++a+ eG+++ P  +g a +   + + ++e  +k +
  MMETSP1137-20121227|7861_1 220 IWQQ--TG--GNVDYFVAGAGTGGTMAGVGAYLKEQNSQLKNVLVEPTESRvltgaFPDQHSIVGIGAGVpLPFIEALSAQQPWSDAPRGHVDEFASATSEEaMAWADRLAAEEGMLVGPS-AGAACKVACQVAARDEAAGKTV 358
                 5555..23..478999******************999999977654333310000122233333333333122333333333344444446778988887762556778999999999885.5556666666666666666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (414 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       185  (0.0451); expected 82.0 (0.02)
Passed bias filter:                      155  (0.0377864); expected 82.0 (0.02)
Passed Vit filter:                        20  (0.00487567); expected 4.1 (0.001)
Passed Fwd filter:                        15  (0.00365675); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.56u 0.17s 00:00:00.73 Elapsed: 00:00:00.60
# Mc/sec: 910.72
//
Query:       MMETSP1137-20121227|7862_1  [L=436]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (436 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        83  (0.020234); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.13s 00:00:00.43 Elapsed: 00:00:00.42
# Mc/sec: 1370.17
//
Query:       MMETSP1137-20121227|7863_1  [L=487]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (487 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        75  (0.0182838); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.12s 00:00:00.43 Elapsed: 00:00:00.48
# Mc/sec: 1339.14
//
Query:       MMETSP1137-20121227|7864_1  [L=116]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (116 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       105  (0.0255973); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.12s 00:00:00.28 Elapsed: 00:00:00.27
# Mc/sec: 567.06
//
Query:       MMETSP1137-20121227|7865_1  [L=405]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      7e-88  292.8   0.0    7.8e-88  292.6   0.0    1.0  1  TIGR03674 fen_arch: flap structure-specific endonuclease
    5.5e-44  148.6   0.0    3.1e-20   70.0   0.0    3.0  3  TIGR00600 rad2: DNA excision repair protein (rad2)
    1.9e-06   24.3   0.0    0.00028   17.2   0.0    2.1  2  TIGR00593 pola: DNA polymerase I


Domain annotation for each model (and alignments):
>> TIGR03674  fen_arch: flap structure-specific endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  292.6   0.0   5.7e-91   7.8e-88      11     338 .]      18     350 ..       1     350 [. 0.92

  Alignments for each domain:
  == domain 1    score: 292.6 bits;  conditional E-value: 5.7e-91
   TIGR03674  11 keeieledlsgkvvavDalNalYqfLssirq.edgtplkdskGritshlsGllyrtinllekgikpvyvFDGkppelKkeeleeRrevreeaeekleealekgdleeaakyakrsarldeeivedskkLlellgipyvqApsegEAqaaymvkkgdvdavgsqDYDsLlfGaprlvrnltisgkrklpkknvyvevkpElieLeevLkelgitreqLidiailvGTDynegvkgiGpkkalklikelgdlekvlke......keeeie..nldeirelFlnPpvtd..dYelelkkpdkekiieflveehdfseervekalerleka.kkskqktLdawf 338
                  +e+++e+l+g+v+a+Da  +lYqfL ++rq e+++ l +++G++tsh++G l rt++lle gikp+yvFDGkppelK e+l+ R+e+++eae+ l++ale+g++ee++k ++r+a+ + ++ +d ++Ll+llg+p+v Apse+EA +a + k g + a++++D D+L fG+p +++nl  +++ ++++k+ +       ++L + L++l+++ e  +d  il+G Dy   ++g+Gp +a+kl+k++g++e+++++           e  ++   r+lFl P+v d  + +l+++ pd+ ++ +flve+h f+e rv++ lerl++  ++ +q++Ld++f
  MMETSP1137-20121227|7865_1  18 VKETKMESLTGRVIAIDASTCLYQFLVAVRQgESQANLSNESGEVTSHIQGFLSRTVRLLECGIKPIYVFDGKPPELKMETLSGRAEKKREAEADLASALESGNAEEVRKASHRTAKATPQMNKDVQELLRLLGVPVVLAPSEAEATCAALCKAGLSYATATEDMDALTFGTPVMLKNLFDTESSRTATKRPVF-----ELTLARALEQLDVSMELFVDFCILCGCDYCGSIRGVGPSTAFKLLKQHGTIEAAVESldasklP--PAEqwRPADARRLFLSPDVADasSLQLSWSAPDSAGLKSFLVERHSFNETRVARSLERLSACrRAGSQSRLDSFF 350
                 6899**************************9345678*************************************************************************************************************************************************998888888444.....4689**************************************************9996543221..12223456789********98335678899*******************************978899******98 PP

>> TIGR00600  rad2: DNA excision repair protein (rad2)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.7   0.0   2.2e-22     3e-19       1     101 [.       1     112 [.       1     119 [. 0.80
   2 !   70.0   0.0   2.3e-23   3.1e-20     749     892 ..     109     260 ..     103     269 .. 0.79
   3 !   10.4   0.0   2.3e-05     0.031     946    1014 ..     289     357 ..     283     378 .. 0.79

  Alignments for each domain:
  == domain 1    score: 66.7 bits;  conditional E-value: 2.2e-22
   TIGR00600   1 mGVqglWk.llecsg...rpvkletLegKilAvDiSiWlyqalKavRDkeGNa.ikn......sHlltlFrRlCKLLfFrirPvFVFDGdaPlLKrqTlakRrqRrdkased 101
                 mG++gl   + +c+    ++ k+e+L g+++A+D+S  lyq+l avR  e  a + n      sH+ ++  R  +LL  +i+P++VFDG  P LK +Tl  R +++ +a+ d
  MMETSP1137-20121227|7865_1   1 MGIKGLMPfISDCAPaavKETKMESLTGRVIAIDASTCLYQFLVAVRQGESQAnLSNesgevtSHIQGFLSRTVRLLECGIKPIYVFDGKPPELKMETLSGRAEKKREAEAD 112
                 78888875244565411166689************************86543313333444448******************************************999987 PP

  == domain 2    score: 70.0 bits;  conditional E-value: 2.3e-23
   TIGR00600 749 leaflkaeqeslkakkqq.qkRiadeVTgqmikEsqELLrlFGiPYivAPmEAEAqCakLdlldlvdGiiTDDSDvfLFGarkvYkNfFnk.......nkfVEyYqyedikkqlgldrkklinLAyLLGSDYTeGlptvGpVsalEilnEFp 892
                  ea l +  es +a++ +     +++ T qm k++qELLrl G+P + AP EAEA Ca L +  l   + T+D D   FG+  + kN+F+        ++ V     +  ++ql++  + +++   L G DY   +++vGp +a+ +l+  +
  MMETSP1137-20121227|7865_1 109 AEADLASALESGNAEEVRkASHRTAKATPQMNKDVQELLRLLGVPVVLAPSEAEATCAALCKAGLSYATATEDMDALTFGTPVMLKNLFDTessrtatKRPVFELTLARALEQLDVSMELFVDFCILCGCDYCGSIRGVGPSTAFKLLKQHG 260
                 444444444444444322033446789**************************************************************852222222344544456667899*********************************998876 PP

  == domain 3    score: 10.4 bits;  conditional E-value: 2.3e-05
   TIGR00600  946 YlkPvV.DdskssFlWGkPDldklReFlkaqlGWsrektdEvLlPvlkkkkakqtqlridsFFrlaqqek 1014
                  +l P V D s    +W  PD   l++Fl ++  ++ ++   +L  +       + q+r+dsFF     ++
  MMETSP1137-20121227|7865_1  289 FLSPDVaDASSLQLSWSAPDSAGLKSFLVERHSFNETRVARSLERL-SACRRAGSQSRLDSFFVSRAPKA 357 
                  6888774778889*****************************9765.5666789*********8544333 PP

>> TIGR00593  pola: DNA polymerase I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.2   0.0   0.00089       1.2       4      86 ..      33     117 ..      30     125 .. 0.81
   2 !   17.2   0.0     2e-07   0.00028     152     219 ..     208     273 ..     131     298 .. 0.82

  Alignments for each domain:
  == domain 1    score: 5.2 bits;  conditional E-value: 0.00089
   TIGR00593   4 iDghslafRayfalkk....epLknskgeptnavyGfvkmllkllkeekpeyvvvafdsekktfRheayeeYKanRketpeelaeql 86 
                 iD++  ++    a+++    ++L+n++ge t+ + Gf++  ++ll+       + +fd + ++++ e+  +   +++e+ ++la  l
  MMETSP1137-20121227|7865_1  33 IDASTCLYQFLVAVRQgesqANLSNESGEVTSHIQGFLSRTVRLLECGI--KPIYVFDGKPPELKMETLSGRAEKKREAEADLASAL 117
                 8888888888888877777789*****************9999998654..346689999999999998888777777777777655 PP

  == domain 2    score: 17.2 bits;  conditional E-value: 2e-07
   TIGR00593 152 telteltaeavvekygvtpeqlvdlkaLvGDkSDnipGvkgiGeKtAakLLkefgslekiyenlekik 219
                   + elt +   e+  v  e +vd+  L+G   D    ++g+G+ tA kLLk++g++e+ +e+l++ k
  MMETSP1137-20121227|7865_1 208 RPVFELTLARALEQLDVSMELFVDFCILCG--CDYCGSIRGVGPSTAFKLLKQHGTIEAAVESLDASK 273
                 44567788888999999999*********9..799999************************999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (405 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       135  (0.0329108); expected 82.0 (0.02)
Passed bias filter:                      118  (0.0287665); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.41u 0.13s 00:00:00.54 Elapsed: 00:00:00.55
# Mc/sec: 971.92
//
Query:       MMETSP1137-20121227|7866_1  [L=259]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (259 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        61  (0.0148708); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.14s 00:00:00.36 Elapsed: 00:00:00.28
# Mc/sec: 1178.80
//
Query:       MMETSP1137-20121227|7867_1  [L=42]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (42 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        21  (0.00511945); expected 82.0 (0.02)
Passed bias filter:                       21  (0.00511945); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.15s 00:00:00.27 Elapsed: 00:00:00.28
# Mc/sec: 191.16
//
Query:       MMETSP1137-20121227|7868_1  [L=337]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (337 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       104  (0.0253535); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.14s 00:00:00.40 Elapsed: 00:00:00.34
# Mc/sec: 1308.24
//
Query:       MMETSP1137-20121227|7869_1  [L=321]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (321 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        94  (0.0229157); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.13s 00:00:00.39 Elapsed: 00:00:00.45
# Mc/sec: 941.52
//
Query:       MMETSP1137-20121227|7870_1  [L=201]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (201 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       152  (0.0370551); expected 82.0 (0.02)
Passed bias filter:                      133  (0.0324232); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.13s 00:00:00.34 Elapsed: 00:00:00.40
# Mc/sec: 663.25
//
Query:       MMETSP1137-20121227|7871_1  [L=344]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0048   15.0   1.8       0.04   12.1   0.0    2.5  3  TIGR01557 myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class


Domain annotation for each model (and alignments):
>> TIGR01557  myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.1      0.02        81       3      23 ..      64      84 ..      63      90 .. 0.87
   2 !   12.1   0.0   9.6e-06      0.04       1      34 [.     189     218 ..     189     226 .. 0.90
   3 ?   -3.7   0.1      0.86   3.5e+03       5      10 ..     290     295 ..     287     296 .. 0.76

  Alignments for each domain:
  == domain 1    score: 1.5 bits;  conditional E-value: 0.02
   TIGR01557  3 rvvWteelhrrFlqAvqklGg 23
                +  W e ++   l Av+  G 
  MMETSP1137-20121227|7871_1 64 KATWAESEDAELLAAVKAWGT 84
                568**************9997 PP

  == domain 2    score: 12.1 bits;  conditional E-value: 9.6e-06
   TIGR01557   1 kkrvvWteelhrrFlqAvqklGgedkatPkkIle 34 
                 ++r +Wt  ++++ l++v+++G   +   ++I++
  MMETSP1137-20121227|7871_1 189 NARACWTAHEDEVILEGVRRFGC-RW---RQIAA 218
                 6899*******************.99...88865 PP

  == domain 3    score: -3.7 bits;  conditional E-value: 0.86
   TIGR01557   5 vWteel 10 
                 +Wt++l
  MMETSP1137-20121227|7871_1 290 SWTSQL 295
                 799987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (344 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        39  (0.00950756); expected 82.0 (0.02)
Passed bias filter:                       30  (0.00731351); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.26u 0.12s 00:00:00.38 Elapsed: 00:00:00.41
# Mc/sec: 1107.42
//
Query:       MMETSP1137-20121227|7872_1  [L=86]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (86 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.43
# Mc/sec: 263.98
//
Query:       MMETSP1137-20121227|7873_1  [L=691]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (691 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       104  (0.0253535); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.12s 00:00:00.54 Elapsed: 00:00:00.55
# Mc/sec: 1658.26
//
Query:       MMETSP1137-20121227|7874_1  [L=371]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.7e-33  111.9   0.2    8.4e-33  111.4   0.1    1.2  1  TIGR03168 1-PFK: hexose kinase, 1-phosphofructokinase family
    2.8e-30  103.2   0.0    4.1e-30  102.7   0.0    1.2  1  TIGR03828 pfkB: 1-phosphofructokinase
    1.1e-16   58.8   0.0    1.8e-16   58.1   0.0    1.3  1  TIGR01231 lacC: tagatose-6-phosphate kinase
    1.4e-06   25.7   0.1     0.0013   16.0   0.1    2.1  2  TIGR02152 D_ribokin_bact: ribokinase


Domain annotation for each model (and alignments):
>> TIGR03168  1-PFK: hexose kinase, 1-phosphofructokinase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  111.4   0.1   8.2e-36   8.4e-33       3     264 ..       8     277 ..       6     282 .. 0.89

  Alignments for each domain:
  == domain 1    score: 111.4 bits;  conditional E-value: 8.2e-36
   TIGR03168   3 TvTlNpaiDktvevee.lelgevnrvesvekdagGKGinVarvlkelg.aevvalgflGgftgefiealleeegikadfvevkgetRinvkik.essgeetelnepGpeiseeeleallekleellkkgdvvvlsGSlPrgvpedfyaelielake....kgakvilDtsgeaLrealka.kplliKPNkeEleelvgrelkteeevieaare.llekGvenvlvSlGadGallvtkeg.alkaeapkvevvstvGAGDsmvAgfllalekg 264
                  v +Npa+ +++++++ lelg+vnr++s ++  gGKG   a +l+++   e++   flGg+tg+ +eall++++++  + + ++ tRi++++  +     te+  p  ++se el+all ++ee+l + d ++++G  P+g  +d+y +l++++ +     + +v+lD  +  + e+l++ +++++K N  E ++l+g++ +  + ++ +a++ +l+++     ++ G + all+t+ +  ++ ++p+vevv+ +GAGD   A fl+ l+k 
  MMETSP1137-20121227|7874_1   8 VVGPNPALQRVLSLPTqLELGSVNRAASLSEYVGGKGQGAALALARWApGETTLASFLGGDTGRAVEALLSASDLELLTQPTAAPTRICTTLLsPGVAGGTEVIDPSGTVSEMELDALLGQIEERLXTFDALAFCGTCPSGA-QDIYSRLVSMLAAsasgDKCTVLLDGIK-QVDEVLNSgRVDVLKINVLEATTLTGTSSAAAAAAVLFAENgALRRRRALLALTDGPKPALLFTSATqGWRLHVPSVEVVNAIGAGDVCTAVFLYHLAKA 277
                 6889**********988****************************9863678888899***********************************7888889*****************************************7.6899999888777554456688888665.578889888*****************998777776666655166677788889*******99988766***************************99876 PP

>> TIGR03828  pfkB: 1-phosphofructokinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.7   0.0     4e-33   4.1e-30       4     264 ..       9     277 ..       6     282 .. 0.87

  Alignments for each domain:
  == domain 1    score: 102.7 bits;  conditional E-value: 4e-33
   TIGR03828   4 vTlNpaiDktiele.elelgevnrveserldagGKGinVarvLkklgv.evvalgflGgftgeeiealleeegiktdfvevkgetRinvkikes.sgeetklnepGpeiseeeleallekleeqlkegdvlvlaGSlPrgvpedlyaelikllrek....gakvilDtsgeaLlkvlkakplliKPNkeEleellgrelkteeevieaar.kllekgvenvlislGadGallvtke.galfakapkievkstvGAGDsmvAgfllalekg 264
                 v +Npa+ ++++l  +lelg+vnr++s +   gGKG   a +L+++   e++   flGg+tg+ +eall++++++  +   +  tRi++++ ++     t++  p  ++se el+all ++ee+l + d l ++G+ P+g  +d+y +l+++l ++    + +v lD  +++     + + +++K N  E ++l+g++ +  ++++  a+   l+++ +   ++ G + all+t+  + ++ + p +ev++ +GAGD   A fl++l+k 
  MMETSP1137-20121227|7874_1   9 VGPNPALQRVLSLPtQLELGSVNRAASLSEYVGGKGQGAALALARWAPgETTLASFLGGDTGRAVEALLSASDLELLTQPTAAPTRICTTLLSPgVAGGTEVIDPSGTVSEMELDALLGQIEERLXTFDALAFCGTCPSGA-QDIYSRLVSMLAASasgdKCTVLLDGIKQVDEVLNSGRVDVLKINVLEATTLTGTSSAAAAAAVLFAEnGALRRRRALLALTDGPKPALLFTSAtQGWRLHVPSVEVVNAIGAGDVCTAVFLYHLAKA 277
                 789*********9725777**************************9752677789***************************************9888999999999*********************************5.578888887777666666899999988877666666779****************9997776665555056666666777899***99999876489999***********************99876 PP

>> TIGR01231  lacC: tagatose-6-phosphate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.1   0.0   1.8e-19   1.8e-16       3     260 ..       7     270 ..       5     282 .. 0.86

  Alignments for each domain:
  == domain 1    score: 58.1 bits;  conditional E-value: 1.8e-19
   TIGR01231   3 ltvtlnpsvdisypl.ealkvdtvnrvkevsktaggkglnvtrvlaqv..gdkvlasgllggklgefiekeldksaikhafykisgetrnciailhegqq..teileqgpeisakeakgfleffekllkkvevvaisgslpkglpqdyyekliel....akdkgvavvldcsgaaletvlesaakptvikpnteelsqllekevtedveelkdalkeplfsgiewiivslgaqgafakhgdt.fykvdipkiavvnpvgsgdstvagi 260
                 l v  np+++    l ++l + +vnr    s   ggkg   +  la+   g+  la  +lgg+ g+ +e+ l  s+++       + tr c ++l  g    te+++   ++s+ e + +l   e+ l   +++a  g+ p+g  qd y++l+++    a+ ++ +v+ld   + +++vl+s  +  v+k n+ e + l +       + +  a + +l      + ++ g + a+   + t  +++++p++ vvn +g+gd   a  
  MMETSP1137-20121227|7874_1   7 LVVGPNPALQRVLSLpTQLELGSVNRAASLSEYVGGKGQGAALALARWapGETTLA-SFLGGDTGRAVEALLSASDLELLTQPTAAPTRICTTLLSPGVAggTEVIDPSGTVSEMELDALLGQIEERLXTFDALAFCGTCPSGA-QDIYSRLVSMlaasASGDKCTVLLDGI-KQVDEVLNSG-RVDVLKINVLEATTLTGTSSAAAAAAVLFAENGALRRRRALLALTDGPKPALLFTSATqGWRLHVPSVEVVNAIGAGDVCTAVF 270
                 6677788888777774679********************99999997533677666.59*************************************9974449****************************************5.799999886522225677899999976.5689999865.789****************99999999999999****************997765554169*****************988765 PP

>> TIGR02152  D_ribokin_bact: ribokinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.6   0.0   0.00044      0.45      21      62 ..      27      69 ..       7      92 .. 0.82
   2 !   16.0   0.1   1.2e-06    0.0013     175     265 ..     187     279 ..     157     283 .. 0.79

  Alignments for each domain:
  == domain 1    score: 7.6 bits;  conditional E-value: 0.00044
   TIGR02152 21 pGetvkaeefkiaaGGKGANQAvaaarlg.aevsmigkvGkDe 62
                 G   +a +++ + GGKG   A+a ar +  e+++ + +G D+
  MMETSP1137-20121227|7874_1 27 LGSVNRAASLSEYVGGKGQGAALALARWApGETTLASFLGGDT 69
                566667889999****************999999999999995 PP

  == domain 2    score: 16.0 bits;  conditional E-value: 1.2e-06
   TIGR02152 175 lvdiivpNetEaeiLtgievedledaekaae.kllekgvkaviitlGskGallvskd.ekklipalkvkavDttaAGDtFigalavaLaegks 265
                  vd++  N  Ea +Ltg++ + +++a   ae   l++    + +t G k all ++  +   +++  v++v   +AGD+ ++ +  +La+ ++
  MMETSP1137-20121227|7874_1 187 RVDVLKINVLEATTLTGTSSAAAAAAVLFAEnGALRRRRALLALTDGPKPALLFTSAtQGWRLHVPSVEVVNAIGAGDVCTAVFLYHLAKARA 279
                 6899*************997666655544441445555677999******99888773666799999********************999754 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (371 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       101  (0.0246221); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.33u 0.15s 00:00:00.48 Elapsed: 00:00:00.33
# Mc/sec: 1483.88
//
Query:       MMETSP1137-20121227|7876_1  [L=374]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   1.2e-131  436.8   0.5   1.3e-131  436.6   0.4    1.0  1  TIGR03376 glycerol3P_DH: glycerol-3-phosphate dehydrogenase (NAD(+))


Domain annotation for each model (and alignments):
>> TIGR03376  glycerol3P_DH: glycerol-3-phosphate dehydrogenase (NAD(+))
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  436.6   0.4  3.3e-135  1.3e-131       1     340 [.      40     373 ..      40     374 .] 0.98

  Alignments for each domain:
  == domain 1    score: 436.6 bits;  conditional E-value: 3.3e-135
   TIGR03376   1 kvavvGsGnwGtaiAkivaenakalpelfeekvkmwvfeekiegkkltevineehenvkyLpgiklpenlvavpdleeaakdadilvfviPhqflekilkqlkgkvkkkaraisclkGlevskdgvkllsdiieeel.giacgvlsGanlAnevAkekfsettvaykepkdfdvdaevlkalferpyFrvsvvedvagveiagalknvvAiaaGfveGlelgdnakaAvlrlGllemikfaklffeesevtlveesaGvaDlittClggRnvkvaealaktgksleelekellngqklqGvatakeveellkkknleeefPlfeavykilyeelkikklie 340
                 kv+vvGsGnwG+aiAkiv++n  ++ e f+++v+mwv++e+i+gk+lt++in+++envkyLpg+k  +n++a+pdl+ a+kd+ +l+fv+Phqf++k  + ++  + k+ ra+s++kG+e  ++g +l+s++i++ + g+ ++vl+Gan+AnevA+++f+e tv+y      +++ + +++lf+ p Fr+  ++dvag e++galknvvA++aGf++Gl++g n+kaA++r+Gl e+ kfak+ff+  + ++++es+G+aDl+ttC ggRn+k+aea+ak   s +e+ek+llngqklqG +tak+v  +lkkk+l+eefPlf+ +++i  e++++k+++e
  MMETSP1137-20121227|7876_1  40 KVTVVGSGNWGSAIAKIVGRNVLERDE-FDDEVRMWVYQEQINGKNLTDIINAKNENVKYLPGVKFTKNVIADPDLASACKDSTLLIFVMPHQFIPKNWDSIE--LGKGCRAVSLIKGIEFDENGPQLISQYIKKVMkGMDVSVLMGANVANEVAQDQFCESTVGYDV----ESSGQIWQKLFDCPTFRIGKIKDVAGTELCGALKNVVALGAGFCDGLGYGGNTKAAIIRIGLKETAKFAKMFFDGVQDETFMESCGLADLVTTCFGGRNRKCAEAFAKGEGSWDEIEKKLLNGQKLQGTITAKDVLLVLKKKKLTEEFPLFTRIHEIAXEGKDPKTIVE 373
                 69********************99998.**********************************************************************99985..89****************************9999***************************98....899*********************************************************************************************************99****************************************************9999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (374 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       159  (0.0387616); expected 82.0 (0.02)
Passed bias filter:                      133  (0.0324232); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.31u 0.15s 00:00:00.46 Elapsed: 00:00:00.33
# Mc/sec: 1495.88
//
Query:       MMETSP1137-20121227|7877_1  [L=213]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (213 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        44  (0.0107265); expected 82.0 (0.02)
Passed bias filter:                       44  (0.0107265); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.18s 00:00:00.37 Elapsed: 00:00:00.25
# Mc/sec: 1124.55
//
Query:       MMETSP1137-20121227|7879_1  [L=532]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.2e-62  208.7   0.0    1.8e-53  179.4   0.0    2.1  2  TIGR00465 ilvC: ketol-acid reductoisomerase


Domain annotation for each model (and alignments):
>> TIGR00465  ilvC: ketol-acid reductoisomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  179.4   0.0   4.4e-57   1.8e-53       4     280 ..      78     369 ..      74     398 .. 0.84
   2 !   27.3   0.0   8.5e-11   3.5e-07     188     264 ..     414     491 ..     410     509 .. 0.85

  Alignments for each domain:
  == domain 1    score: 179.4 bits;  conditional E-value: 4.4e-57
   TIGR00465   4 kkvaiiGyGsqGeaqalnlrds....glnvivglrkeaaswkkAeedGfk.....vltveeaikkadlimiLlpDevqkevyeaeikpllkegkallfsHGfni.vfkqiv..ipkdvdvvlvAPKgpGalvReeyk.....egrGvpsliAveqdvtgeakeiAlayAkaiGgaragvlettFkeEvesDLfGEqavLcGglealikaafdtLveaGyqpelAyfeivhel.klivdllkekGlelmrdavsntAklgalelreilkeelkkemqkilkeiqnGefakewalek 280
                 k++++iG+GsqG aqa nlr+s     ++v vglr++++s++ A+  Gf+     + ++   i+++++++ L++D +  ++y++ i   lk g +++ sHGf + + ++i    pkdv+vv+vAPKg G  vR+ y+     +g G+++++Av+qdv+g+a++ Al++A ++G+   +v++tt  +E +sD+fGE+ +L+G ++++i+  f      G +pe A+++  + +   ++  + ++G+  +++++s   k    +++       ++ +++ ++ +  G++ ++ ++  
  MMETSP1137-20121227|7879_1  78 KQIGVIGWGSQGPAQAQNLRESlegtDIKVKVGLRPGSSSMDLARAAGFDekngtLGEMYSTISESEMVLCLISDGACVSEYKK-IFAALKPGTTFGLSHGFLLgHLESIGedFPKDVNVVMVAPKGMGPSVRRLYElgrevNGSGINASFAVHQDVNGNATDHALGWAIGVGSP--YVFQTTLAAEWRSDIFGERCILLGAVHGMIESLFRRYEYFGMSPEDAFKNSAEVItGPLTTTISHEGILAVYNKLSAEDKXVFKQAYCASYMPARSIIEECYDTVACGNEIRDVVNAV 369
                 89*******************8765568999************99998843333367788899*******************99.*****************87344443344***********************844434567****************************99..*************************************************9998886789*****************988876666666666677888888888888888888776654 PP

  == domain 2    score: 27.3 bits;  conditional E-value: 8.5e-11
   TIGR00465 188 glealikaafdtLveaGyqpelAyfeivhel.klivdllkekGlelmrdavsntAklgalelreilkeelkkemqkil 264
                    a + a+ dtLv++G+  ++  +e v e  +++ + ++ +G+++m+d++s tA+lg+ ++++ ++  l ++ +  +
  MMETSP1137-20121227|7879_1 414 VYCATMMAQIDTLVDNGHVYSEVVNESVIESvDSLNPYMHARGVSYMVDNCSVTARLGSRKWAPRFDYILTEQAYSAI 491
                 556788999*********99888888766644*******************************999888877666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (532 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       128  (0.0312043); expected 82.0 (0.02)
Passed bias filter:                      123  (0.0299854); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.18s 00:00:00.57 Elapsed: 00:00:00.56
# Mc/sec: 1231.90
//
Query:       MMETSP1137-20121227|7880_1  [L=122]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (122 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        87  (0.0212092); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.12s 00:00:00.27 Elapsed: 00:00:00.27
# Mc/sec: 596.40
//
Query:       MMETSP1137-20121227|7881_1  [L=552]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (552 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       641  (0.156265); expected 82.0 (0.02)
Passed bias filter:                      160  (0.0390054); expected 82.0 (0.02)
Passed Vit filter:                        37  (0.00901999); expected 4.1 (0.001)
Passed Fwd filter:                        15  (0.00365675); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.88u 0.21s 00:00:01.09 Elapsed: 00:00:00.84
# Mc/sec: 867.36
//
Query:       MMETSP1137-20121227|7882_1  [L=310]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (310 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        58  (0.0141394); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.12s 00:00:00.36 Elapsed: 00:00:00.35
# Mc/sec: 1169.05
//
Query:       MMETSP1137-20121227|7883_1  [L=634]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.9e-19   66.3   0.0    3.8e-19   65.9   0.0    1.1  1  TIGR03903 TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
    2.5e-08   31.5   0.0      4e-08   30.8   0.0    1.2  1  TIGR03724 arch_bud32: Kae1-associated kinase Bud32


Domain annotation for each model (and alignments):
>> TIGR03903  TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.9   0.0   1.8e-22   3.8e-19       2     233 ..     317     536 ..     316     542 .. 0.87

  Alignments for each domain:
  == domain 1    score: 65.9 bits;  conditional E-value: 1.8e-22
   TIGR03903   2 tghkvaikllRedaaeeerlvaRFrReialCarLshPnivaLlDsGeaedgllFavFeyveGrtlrevLaadGaLpaaetgrLmlqvLDalaaahdaGvvhRDLkPqnimvsaadveshakvLDFGigaLlpgvedadeatltrttevlGsPaYaaPeqLRgep.vtaksDlYaWGLivleCLtGkrvvqGasvaevlykqLsPvdvslPsaiaghpLgevLRkalnkdvrqR 233
                 tg+  a+k +   +     l +    ei++ +rL+h  +v+Ll+  e +   +  v ey +G  l+++++a   +  a+    + q+LD++   h++ v hRDLk +n ++  +   ++ k++DFG++ +    ++             G+P Y+aPe L g +   ++ D+++ G+ +   LtG    q  s  e+  + +s   ++lP+ + +  + +++R+ l   + qR
  MMETSP1137-20121227|7883_1 317 TGQLAAMKTIDRTKLYTPNLKKTVEHEIKILKRLRHDGVVRLLEVIERPR-SIHLVLEYAPGGNLQQLVKARKRIDEAHARSYLWQILDSVEYCHSHRVCHRDLKLENFVLDRS--FRTVKLIDFGLSVIWRPDQA--------LFKSYGTPCYSAPEILSGQSyQGPQVDVWSLGVSLYTMLTGTLPFQAMSASELKRRVMS-GRLTLPDGLSA-EVRDLIRQMLTLSPEQR 536
                 56666777776666677778888999******************999887.99*********************************************************9876..5789********99765444........23457*************983579*************************9998777766.5799***9976.57899999999998888 PP

>> TIGR03724  arch_bud32: Kae1-associated kinase Bud32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.8   0.0   1.9e-11     4e-08      44     137 ..     340     442 ..     329     467 .. 0.89

  Alignments for each domain:
  == domain 1    score: 30.8 bits;  conditional E-value: 1.9e-11
   TIGR03724  44 trkEarllseakkagvntPvvydvdpeekkivmeyiegkklkdlleekel.......ellkevGelvgklHkagivhgDlttsNiivk..ddklyliDfGLgk 137
                 + +E+++l+++++ gv   + +   p++ ++v+ey  g +l++l+++++        ++l ++ + v  +H+++++h Dl  +N++++   +++ liDfGL+ 
  MMETSP1137-20121227|7883_1 340 VEHEIKILKRLRHDGVVRLLEVIERPRSIHLVLEYAPGGNLQQLVKARKRideaharSYLWQILDSVEYCHSHRVCHRDLKLENFVLDrsFRTVKLIDFGLSV 442
                 4689***********987777777888999****************988899999999999**************************52257899******96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (634 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        84  (0.0204778); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.20s 00:00:00.64 Elapsed: 00:00:00.51
# Mc/sec: 1640.81
//
Query:       MMETSP1137-20121227|7884_1  [L=454]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.2e-13   48.9   0.1    8.1e-09   33.0   0.0    2.3  2  TIGR02427 protocat_pcaD: 3-oxoadipate enol-lactonase
    3.5e-12   44.3   1.4    2.9e-08   31.5   0.7    3.0  2  TIGR01738 bioH: putative pimeloyl-BioC--CoA transferase BioH
      1e-10   39.3   0.0    1.2e-09   35.8   0.0    2.2  2  TIGR03695 menH_SHCHC: 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase
    3.4e-10   37.2   0.1      3e-06   24.3   0.1    2.3  2  TIGR03056 bchO_mg_che_rel: putative magnesium chelatase accessory protein
    2.3e-09   35.1   0.0    9.4e-08   29.8   0.0    2.1  2  TIGR01250 pro_imino_pep_2: proline-specific peptidases
    6.1e-08   30.2   0.1    1.1e-07   29.3   0.1    1.3  1  TIGR03611 RutD: pyrimidine utilization protein D
    2.8e-07   27.8   0.2    4.6e-07   27.2   0.1    1.2  1  TIGR03343 biphenyl_bphD: 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase
    0.00037   17.6   0.0    0.00064   16.8   0.0    1.3  1  TIGR01249 pro_imino_pep_1: prolyl aminopeptidase
  ------ inclusion threshold ------
      0.031   11.2   0.9      0.041   10.8   0.1    1.5  2  TIGR01392 homoserO_Ac_trn: homoserine O-acetyltransferase


Domain annotation for each model (and alignments):
>> TIGR02427  protocat_pcaD: 3-oxoadipate enol-lactonase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.0   0.0   1.8e-11   8.1e-09       4     120 ..     150     276 ..     147     286 .. 0.80
   2 !   13.6   0.0   1.5e-05    0.0069     189     249 ..     385     449 ..     380     451 .. 0.73

  Alignments for each domain:
  == domain 1    score: 33.0 bits;  conditional E-value: 1.8e-11
   TIGR02427   4 yrlegaeadkpvlvlinSLGtdlrlwdkvlealt.kdfrvlryDkrGHGlSdvpe......gpysiedladdvlallD....algiekaavcGlSlGGliaqaLaarrpdrvealvlsntaakigtae 120
                 y   g+++++pvl l+  +G +   w+  ++al+ + ++v ++D  G G+Sd p+       ++ +++ a+ +++++     + g+++a+v+G SlGG +++a aa++ d+v+  vl+n+a ++++ e
  MMETSP1137-20121227|7884_1 150 YIEAGEASGQPVL-LVHGFGGSAYHWRRNINALAsRGLHVFAIDLLGFGQSDKPAdivydaEDVWVAQCARFMVEVMGcgerEGGARRAMVAGNSLGGFVSLAAAATHKDLVSGCVLLNSAGRFEQVE 276
                 6667888888865.666777777789999999972579*************876421111146679999999999996222245789***********************************998865 PP

  == domain 2    score: 13.6 bits;  conditional E-value: 1.5e-05
   TIGR02427 189 leeiavPtlviaGdeDgstPpelvreiad...lvpgarfaeiee.aaHlpnleqpeafaallrdf 249
                 l++++vP+l++ G+ D+   p++++ ++    ++   +++ ++  a+H p  e+p++++a+l df
  MMETSP1137-20121227|7884_1 385 LRKLRVPLLLLWGKFDPWIRPSTADLLQRraaALGVETVSRVDVnAGHCPMDEAPAEVNAALLDF 449
                 789*************98877765555440003333334444323*****************999 PP

>> TIGR01738  bioH: putative pimeloyl-BioC--CoA transferase BioH
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.5   0.7   6.4e-11   2.9e-08       5     107 ..     159     277 ..     155     285 .. 0.73
   2 !    8.8   0.0   0.00055      0.25     182     244 ..     383     449 ..     378     450 .. 0.86

  Alignments for each domain:
  == domain 1    score: 31.5 bits;  conditional E-value: 6.4e-11
   TIGR01738   5 kklvLihGWglnaevfadlveeLsah.ftlslvDLPGyGdsae.......lralslaevaeailaqa........pakaiwlGWsLGGLvalhlalthpdkvrsLvlvasspkfaared 107
                 + ++L+hG+g  a  ++  +++L +   +++++DL G+G+s +        + + +a+ a  +++ +         ++a++ G sLGG v+l +a+th d v++ vl+ s+ +f + e+
  MMETSP1137-20121227|7884_1 159 QPVLLVHGFGGSAYHWRRNINALASRgLHVFAIDLLGFGQSDKpadivydAEDVWVAQCARFMVEVMgcgereggARRAMVAGNSLGGFVSLAAAATHKDLVSGCVLLNSAGRFEQVEE 277
                 6799**************99999875389**********976511111111222344444444433222222222578************************************88776 PP

  == domain 2    score: 8.8 bits;  conditional E-value: 0.00055
   TIGR01738 182 ralqkisvPvLrlyGqkDalvPakvvealdklap....qsellvlekaahaPflshaeafaallref 244
                 r l k+ vP+L+l+G+ D  + + +++ l+++a     ++ + v  +a+h P    ++++ a+l +f
  MMETSP1137-20121227|7884_1 383 RYLRKLRVPLLLLWGKFDPWIRPSTADLLQRRAAalgvETVSRVDVNAGHCPMDEAPAEVNAALLDF 449
                 57999*************************999877555666677799****999999999999888 PP

>> TIGR03695  menH_SHCHC: 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.8   0.0   2.7e-12   1.2e-09       3     104 ..     159     268 ..     157     290 .. 0.77
   2 ?    1.1   0.0      0.11        48     177     250 ..     371     449 ..     356     451 .. 0.71

  Alignments for each domain:
  == domain 1    score: 35.8 bits;  conditional E-value: 2.7e-12
   TIGR03695   3 pvlvlLHGflgskedwqalieele.ekfsvlalDLpgHGkskslkekeakdfeea....aqellkel....leklkiekviLvGYSlGGRialalaleaperleglilesa 104
                 + ++l+HGf gs+  w++ i++l+ + ++v a+DL+g G+s+++++  ++d e++    +   + e+    +++ + +++++ G SlGG + la+a+++++ ++g +l ++
  MMETSP1137-20121227|7884_1 159 QPVLLVHGFGGSAYHWRRNINALAsRGLHVFAIDLLGFGQSDKPAD-IVYDAEDVwvaqCARFMVEVmgcgEREGGARRAMVAGNSLGGFVSLAAAATHKDLVSGCVLLNS 268
                 67899*************999996489***************9966.45554443110122223333122134557899*************************9998766 PP

  == domain 2    score: 1.1 bits;  conditional E-value: 0.11
   TIGR03695 177 ratglgkqpslweklkelklpvlylvGekDekFk.kiakemqkllpalklevie....eaGHnihlenpeafakileef 250
                    g+g  +     l++l++p+l+l G+ D   + + a  +q+++ al +e+++    +aGH+   e p++ +++l  f
  MMETSP1137-20121227|7884_1 371 SRNGVGPPQTVDRYLRKLRVPLLLLWGKFDPWIRpSTADLLQRRAAALGVETVSrvdvNAGHCPMDEAPAEVNAALLDF 449
                 5667777777778899999********9998766245556666667777776653334689999999998888877665 PP

>> TIGR03056  bchO_mg_che_rel: putative magnesium chelatase accessory protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.3   0.1   6.5e-09     3e-06      21      73 ..     151     204 ..     139     265 .. 0.84
   2 !   10.6   0.0   9.7e-05     0.044     212     277 ..     381     450 ..     378     451 .. 0.83

  Alignments for each domain:
  == domain 1    score: 24.3 bits;  conditional E-value: 6.5e-09
   TIGR03056  21 rdeGpaaGPvllllhGagasshsfrklvpllaar.frvvapdlPGhGftratar 73 
                 ++ G a+G  +ll+hG g+s++ +r+ + +la+r   v a+dl G G +  +a 
  MMETSP1137-20121227|7884_1 151 IEAGEASGQPVLLVHGFGGSAYHWRRNINALASRgLHVFAIDLLGFGQSDKPAD 204
                 5789999*999*****************999865489*********99877765 PP

  == domain 2    score: 10.6 bits;  conditional E-value: 9.7e-05
   TIGR03056 212 lqralpriavPvlliageedkavppdvs...keaatrlplatlrevp.GlGhlvheedadgvaglildav 277
                 + r l+++ vP+ll+ g+ d  + p+ +   ++ a+ l + t+ +v+  +Gh   +e+++ v + +ld++
  MMETSP1137-20121227|7884_1 381 VDRYLRKLRVPLLLLWGKFDPWIRPSTAdllQRRAAALGVETVSRVDvNAGHCPMDEAPAEVNAALLDFA 450
                 6799****************988776652226778888899999998446**************999986 PP

>> TIGR01250  pro_imino_pep_2: proline-specific peptidases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.8   0.0   2.1e-10   9.4e-08       9     140 ..     143     279 ..     137     300 .. 0.83
   2 ?    3.1   0.0     0.027        12     227     286 ..     385     449 ..     379     451 .. 0.78

  Alignments for each domain:
  == domain 1    score: 29.8 bits;  conditional E-value: 2.1e-10
   TIGR01250   9 ldggyvlftkvkeegekikllvlHGGPgssheyleslkellkegvevilYDQLGsgkSdqPddsd...ekll..tidrfvdEleevrekLaldk.fyllgqSwGglLaqeYalkyqqhlkgliissmlasipeyvkel 140
                  dg +v + + +e + + ++l++HG  gs  +   ++++l+ +g++v+  D LG g+Sd+P d     e+ +  ++ rf+ E+    e+ +  +   + g+S Gg   ++ a + ++ + g ++ ++    ++ ++ +
  MMETSP1137-20121227|7884_1 143 WDGRRVGYIEAGEAS-GQPVLLVHGFGGSAYHWRRNINALASRGLHVFAIDLLGFGQSDKPADIVydaEDVWvaQCARFMVEVMGCGEREGGARrAMVAGNSLGGFVSLAAAATHKDLVSGCVLLNSAGRFEQVEEAV 279
                 677888888888777.99*******9999999999**************************875566788883346799999999988876655599******************99999999988876666655554 PP

  == domain 2    score: 3.1 bits;  conditional E-value: 0.027
   TIGR01250 227 lkeIkvPtLltvgefde.mtpeaaremqekiaksrlvvfe....dgshltmieepeeylkllkdf 286
                 l++++vP Ll  g+fd  + p++a  +q + a   ++++     +++h +m e p+e ++ l df
  MMETSP1137-20121227|7884_1 385 LRKLRVPLLLLWGKFDPwIRPSTADLLQRRAAALGVETVSrvdvNAGHCPMDEAPAEVNAALLDF 449
                 8899************6479999999999887655544432222899999999999999999988 PP

>> TIGR03611  RutD: pyrimidine utilization protein D
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.3   0.1   2.4e-10   1.1e-07      10     114 ..     155     269 ..     150     278 .. 0.82

  Alignments for each domain:
  == domain 1    score: 29.3 bits;  conditional E-value: 2.4e-10
   TIGR03611  10 dadaevvvlssGLGGsgsywapqlevleqe.frvvvyDhrGtgrspeel.....aedysiaalaadvlell....daldiekahvvGhalGgliglelalrkperlaklvlinaW 114
                 +a ++ v+l  G+GGs+ +w  ++++l+++  +v   D  G g+s +       aed  +a+ a+ ++e++     + + ++a v G +lGg+++l  a ++ + ++  vl+n+ 
  MMETSP1137-20121227|7884_1 155 EASGQPVLLVHGFGGSAYHWRRNINALASRgLHVFAIDLLGFGQSDKPAdivydAEDVWVAQCARFMVEVMgcgeREGGARRAMVAGNSLGGFVSLAAAATHKDLVSGCVLLNSA 269
                 567788*********************86549***********99876511222455568999999****94433356788999****************************985 PP

>> TIGR03343  biphenyl_bphD: 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.2   0.1     1e-09   4.6e-07      21     138 ..     147     272 ..     140     285 .. 0.79

  Alignments for each domain:
  == domain 1    score: 27.2 bits;  conditional E-value: 1e-09
   TIGR03343  21 rihyneage..geavimlhgggpgaggwsnyyrniealvdagyrvilkdapgfnksde...vvmdeqrglvn..aravkglmdald....iekahlvgnsmggatalnfaleypdrlgklilmgpgglg 138
                 r+ y eage  g+ v+++hg g  a  w    rni+al+  g  v   d  gf +sd+   +v d +   v   ar +  +m + +      +a + gns+gg  +l  a  + d ++  +l+  +g  
  MMETSP1137-20121227|7884_1 147 RVGYIEAGEasGQPVLLVHGFGGSAYHWR---RNINALASRGLHVFAIDLLGFGQSDKpadIVYDAEDVWVAqcARFMVEVMGCGEreggARRAMVAGNSLGGFVSLAAAATHKDLVSGCVLLNSAGRF 272
                 67788999755889*******99999885...9********************9999544488888776663225555555544331111568999*************************99999865 PP

>> TIGR01249  pro_imino_pep_1: prolyl aminopeptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0   1.4e-06   0.00064      15     125 ..     146     265 ..     140     287 .. 0.74

  Alignments for each domain:
  == domain 1    score: 16.8 bits;  conditional E-value: 1.4e-06
   TIGR01249  15 hqlyyeesGnPdGkPvvflhGGPGsGtd.eecrkffdpevyrivlldqrGaGks.kphaileenttwdlvadiekl........reklkikkWlvfGGsWGstlalayaqkhPekvtklvl 125
                  ++ y e+G+  G+Pv+++hG  Gs  +  ++ +       ++  +d  G G+s kp +i+++ + +  va   ++         ++ + ++ +v G s G  ++la a +h + v++ vl
  MMETSP1137-20121227|7884_1 146 RRVGYIEAGEASGQPVLLVHGFGGSAYHwRRNINALASRGLHVFAIDLLGFGQSdKPADIVYDAE-DVWVAQCARFmvevmgcgEREGGARRAMVAGNSLGGFVSLAAAATHKDLVSGCVL 265
                 577899***************887765413344455566778999********956777877754.4445444332000001113344667889**********************99987 PP

>> TIGR01392  homoserO_Ac_trn: homoserine O-acetyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.0         2   9.3e+02     156     187 ..     103     134 ..      99     139 .. 0.76
   2 ?   10.8   0.1     9e-05     0.041     128     168 ..     235     275 ..     220     286 .. 0.87

  Alignments for each domain:
  == domain 1    score: -3.6 bits;  conditional E-value: 2
   TIGR01392 156 ivvlatsarasaqaiafnevqrqailsDpeyn 187
                 ++++a    a+a+ ++  + ++qai+++  ++
  MMETSP1137-20121227|7884_1 103 MAQVAERELAEAESLSQAQSTQQAIIDEVPWK 134
                 56677777788889999999999999988887 PP

  == domain 2    score: 10.8 bits;  conditional E-value: 9e-05
   TIGR01392 128 klaavvGgSlGGmqalewalsypervkkivvlatsarasaq 168
                 + a+v G SlGG  +l  a++ ++ v+ +v l ++ r +  
  MMETSP1137-20121227|7884_1 235 RRAMVAGNSLGGFVSLAAAATHKDLVSGCVLLNSAGRFEQV 275
                 4589*****************************99987754 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (454 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       120  (0.029254); expected 82.0 (0.02)
Passed bias filter:                       96  (0.0234032); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         9  (0.00219405); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.35u 0.18s 00:00:00.53 Elapsed: 00:00:00.42
# Mc/sec: 1426.74
//
Query:       MMETSP1137-20121227|7885_1  [L=336]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (336 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       312  (0.0760605); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.17s 00:00:00.45 Elapsed: 00:00:00.33
# Mc/sec: 1343.89
//
Query:       MMETSP1137-20121227|7886_1  [L=435]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.1e-06   26.1   0.1    1.8e-06   25.3   0.1    1.3  1  TIGR02021 BchM-ChlM: magnesium protoporphyrin O-methyltransferase
     0.0016   15.6   0.1     0.0033   14.6   0.1    1.5  1  TIGR01983 UbiG: 3-demethylubiquinone-9 3-O-methyltransferase
  ------ inclusion threshold ------
      0.035   11.0   0.0      0.057   10.3   0.0    1.3  1  TIGR00452 TIGR00452: putative methyltransferase


Domain annotation for each model (and alignments):
>> TIGR02021  BchM-ChlM: magnesium protoporphyrin O-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.3   0.1   1.3e-09   1.8e-06      51      93 ..     191     235 ..     159     249 .. 0.86

  Alignments for each domain:
  == domain 1    score: 25.3 bits;  conditional E-value: 1.3e-09
   TIGR02021  51 d.slkGkkvlDAGCGtGllsielA.krGaivkavDiseklvelar 93 
                 + +lkGk +lDAGCG G  +  +A k G +v + Di ++l+++a+
  MMETSP1137-20121227|7886_1 191 TgNLKGKVLLDAGCGIGGPARYIAwKTGCQVIGLDIQQDLINEAN 235
                 2579****************9999789****************98 PP

>> TIGR01983  UbiG: 3-demethylubiquinone-9 3-O-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.1   2.4e-06    0.0033      46      89 ..     192     236 ..     143     243 .. 0.82

  Alignments for each domain:
  == domain 1    score: 14.6 bits;  conditional E-value: 2.4e-06
   TIGR01983  46 kkleglkvlDvGcGgGllsesla.rlgaevtgiDlseelievAkl 89 
                  +l+g+ +lD GcG G  +  +a ++g++v+g+D+ ++li+ A++
  MMETSP1137-20121227|7886_1 192 GNLKGKVLLDAGCGIGGPARYIAwKTGCQVIGLDIQQDLINEANV 236
                 6899**********999999999678999************9986 PP

>> TIGR00452  TIGR00452: putative methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   4.2e-05     0.057     117     189 ..     191     265 ..     177     327 .. 0.68

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 4.2e-05
   TIGR00452 117 lsplkgrtildvGcgsGyylfrmvgeGaklvvGidptelvlkqfeavrklldndkr..aillplGieqlqelkaf 189
                   +lkg+++ld Gcg G     +  +    v+G+d  + +  + +++++l+d++    a+   l   ++ ++++f
  MMETSP1137-20121227|7886_1 191 TGNLKGKVLLDAGCGIGGPARYIAWKTGCQVIGLDIQQDLINEANVLKPLIDDEFAlgAEACKLYACDMTDKASF 265
                 468************98665555555556789********************98651144455666666666644 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (435 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        74  (0.01804); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.32u 0.13s 00:00:00.45 Elapsed: 00:00:00.42
# Mc/sec: 1367.03
//
Query:       MMETSP1137-20121227|7887_1  [L=369]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (369 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       276  (0.0672843); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.16s 00:00:00.44 Elapsed: 00:00:00.54
# Mc/sec: 901.93
//
Query:       MMETSP1137-20121227|7888_1  [L=199]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.9e-13   46.0   0.0    1.1e-11   42.7   0.0    2.0  2  TIGR02378 nirD_assim_sml: nitrite reductase [NAD(P)H], small subunit
    5.2e-08   30.7   0.0    1.2e-07   29.6   0.0    1.5  2  TIGR02377 MocE_fam_FeS: Rieske [2Fe-2S] domain protein, MocE subfamily
    3.8e-05   20.4   0.0    4.5e-05   20.1   0.0    1.0  1  TIGR03228 anthran_1_2_A: anthranilate 1,2-dioxygenase, large subunit
    0.00054   17.7   0.0     0.0009   17.0   0.0    1.3  1  TIGR02694 arsenite_ox_S: arsenite oxidase, small subunit
     0.0033   14.1   0.0     0.0047   13.7   0.0    1.2  1  TIGR03229 benzo_1_2_benA: benzoate 1,2-dioxygenase, large subunit
     0.0043   14.9   0.3     0.0043   14.9   0.2    1.9  2  TIGR01416 Rieske_proteo: ubiquinol-cytochrome c reductase, iron-sulfur subunit


Domain annotation for each model (and alignments):
>> TIGR02378  nirD_assim_sml: nitrite reductase [NAD(P)H], small subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.7   0.0   1.5e-14   1.1e-11       2      82 ..      57     132 ..      56     135 .. 0.96
   2 ?    1.0   0.0      0.14        97      88     104 ..     154     170 ..     145     171 .. 0.84

  Alignments for each domain:
  == domain 1    score: 42.7 bits;  conditional E-value: 1.5e-14
   TIGR02378   2 wqavckleelpeesgvavklddeqlAiFrvkkkevyAiqnlcPhkrafvlsrGlvgdaegelvvacPlhkrkfeLedGkcl 82 
                 w++vc++++l+++s +a+    +++ i   k+ +++A  n+cPh  +++l++G v++      ++cPlh   f+L++Gk +
  MMETSP1137-20121227|7888_1  57 WTTVCSAKDLKPNSLKAAFGAGQDILIATDKGGKIFAAANVCPHI-GTPLDQGTVENGA----IVCPLHRSAFDLKTGKLV 132
                 *********************************************.**********999....***************975 PP

  == domain 2    score: 1.0 bits;  conditional E-value: 0.14
   TIGR02378  88 svktfevrvedgrvlvk 104
                 ++ktf+vr   ++v+v 
  MMETSP1137-20121227|7888_1 154 ELKTFQVRKSGDNVQVL 170
                 689***********996 PP

>> TIGR02377  MocE_fam_FeS: Rieske [2Fe-2S] domain protein, MocE subfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.6   0.0   1.7e-10   1.2e-07       2      78 ..      57     133 ..      56     139 .. 0.92
   2 ?   -3.0   0.0       2.4   1.6e+03      84      99 ..     154     169 ..     148     171 .. 0.70

  Alignments for each domain:
  == domain 1    score: 29.6 bits;  conditional E-value: 1.7e-10
   TIGR02377   2 wvkackaddieredvirfdhggrtfaiyrsaddeyyatdglcthekvhladglvedtevecpkhagafdyrtgealr 78 
                 w   c+a+d++ +       +g+   i      +++a++++c h    l +g ve+  + cp h  afd +tg+ ++
  MMETSP1137-20121227|7888_1  57 WTTVCSAKDLKPNSLKAAFGAGQDILIATDKGGKIFAAANVCPHIGTPLDQGTVENGAIVCPLHRSAFDLKTGKLVG 133
                 9999******99998888889999999999999****************************************9765 PP

  == domain 2    score: -3.0 bits;  conditional E-value: 2.4
   TIGR02377  84 nlktypvkvvdgevlv 99 
                 +lkt+ v+    +v+v
  MMETSP1137-20121227|7888_1 154 ELKTFQVRKSGDNVQV 169
                 6888888777666665 PP

>> TIGR03228  anthran_1_2_A: anthranilate 1,2-dioxygenase, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.0   6.6e-08   4.5e-05      32     155 ..      50     176 ..      33     185 .. 0.77

  Alignments for each domain:
  == domain 1    score: 20.1 bits;  conditional E-value: 6.6e-08
   TIGR03228  32 elifeknwiyacheselannhdfvtlragrqplivtrdgegelhalvnacehrgatltrvgkgnqsvftcpfhawcyk.sdgrlvkvkapgey....aegfdkatrglkkariesyrgfvfvsldvaae 155
                 ++ ++++w   c   +l  n    ++ ag+  ++++ d  g++ a  n c h g+ l + +  n  ++ cp+h  ++  + g+lv   +p         g  k+ r lk  +++     v v ldv+a+
  MMETSP1137-20121227|7888_1  50 DFPVKNVWTTVCSAKDLKPNSLKAAFGAGQ-DILIATDKGGKIFAAANVCPHIGTPLDQGTVEN-GAIVCPLHRSAFDlKTGKLVGPWCPAPPligpLTGKLKSPRELKTFQVRKSGDNVQVLLDVNAK 176
                 55567899********99888888888885.566677888****************99866655.6679****98886367999987666432111135666888888888888888888888888876 PP

>> TIGR02694  arsenite_ox_S: arsenite oxidase, small subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.0   1.3e-06    0.0009      47      86 ..      87     127 ..      68     135 .. 0.81

  Alignments for each domain:
  == domain 1    score: 17.0 bits;  conditional E-value: 1.3e-06
   TIGR02694  47 perdivafsilcthkGcpvsy.eadaktfkcpchfsvfdpe 86 
                 + + i a + +c+h G p++    +++   cp h s fd +
  MMETSP1137-20121227|7888_1  87 KGGKIFAAANVCPHIGTPLDQgTVENGAIVCPLHRSAFDLK 127
                 56789999***********7625689************964 PP

>> TIGR03229  benzo_1_2_benA: benzoate 1,2-dioxygenase, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   0.0   6.8e-06    0.0047      61     114 ..      78     131 ..      56     134 .. 0.85

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 6.8e-06
   TIGR03229  61 rqpiliarnkdgelnalinacshrgamlcrhkrgnkatytcpfhgwtfn.nsgkl 114
                  q ilia +k g++ a  n c h g+ l +   +n +++ cp+h  +f+ ++gkl
  MMETSP1137-20121227|7888_1  78 GQDILIATDKGGKIFAAANVCPHIGTPLDQGTVEN-GAIVCPLHRSAFDlKTGKL 131
                 599*************************9877766.6789*****9998345666 PP

>> TIGR01416  Rieske_proteo: ubiquinol-cytochrome c reductase, iron-sulfur subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.4      0.25   1.7e+02       8      39 ..      14      46 ..       4      69 .. 0.71
   2 !   14.9   0.2   6.3e-06    0.0043     108     154 ..      90     134 ..      51     146 .. 0.76

  Alignments for each domain:
  == domain 1    score: -0.1 bits;  conditional E-value: 0.25
   TIGR01416  8 vlat.aavgavgaaavavplikslnpsakvkaa 39
                ++at a +++ ++  ++ p+++ ++ sa+v  a
  MMETSP1137-20121227|7888_1 14 AAATvALLTGATGFHATAPVVQRVRRSATVSMA 46
                444314455666677888999999999988766 PP

  == domain 2    score: 14.9 bits;  conditional E-value: 6.3e-06
   TIGR01416 108 ewlvvigiCtHLGCiPtlkpeegdkggffCpCHgskydlagrvvkgv 154
                 +++ + ++C H+G  P l + + + g+  Cp H s +dl+     g 
  MMETSP1137-20121227|7888_1  90 KIFAAANVCPHIG-TP-LDQGTVENGAIVCPLHRSAFDLKTGKLVGP 134
                 5678899******.58.66677788*************987777773 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (199 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       115  (0.0280351); expected 82.0 (0.02)
Passed bias filter:                      104  (0.0253535); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.20u 0.17s 00:00:00.37 Elapsed: 00:00:00.35
# Mc/sec: 750.45
//
Query:       MMETSP1137-20121227|7890_1  [L=156]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (156 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        72  (0.0175524); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.17s 00:00:00.33 Elapsed: 00:00:00.32
# Mc/sec: 643.45
//
Query:       MMETSP1137-20121227|7891_1  [L=149]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (149 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        49  (0.0119454); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.12s 00:00:00.28 Elapsed: 00:00:00.28
# Mc/sec: 702.37
//
Query:       MMETSP1137-20121227|7892_1  [L=340]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.038   10.7   0.0      0.055   10.1   0.0    1.1  1  TIGR00115 tig: trigger factor
      0.099    9.2   6.2       0.13    8.9   4.3    1.1  1  TIGR02927 SucB_Actino: 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase


Domain annotation for each model (and alignments):
>> TIGR00115  tig: trigger factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0   2.7e-05     0.055     147     204 ..     212     268 ..     200     277 .. 0.85

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 2.7e-05
   TIGR00115 147 d.aaekgDivtidfegkvdGeafeggkaedfelelgsgqfipgfeeqlvGmkaGeekei 204
                 d ++ +g  v +++++  d+ ++ g  + + ++ +g+g +++ +ee  vGm +G+ + i
  MMETSP1137-20121227|7892_1 212 DtPVIEGQAVRVSYVARLDDSTVCG--KGNLSFRIGNGVVCQAIEESAVGMCVGDRRLI 268
                 458889999*************986..559*************************9876 PP

>> TIGR02927  SucB_Actino: 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   4.3   6.1e-05      0.13     300     338 ..      21      59 ..      13     135 .. 0.63

  Alignments for each domain:
  == domain 1    score: 8.9 bits;  conditional E-value: 6.1e-05
   TIGR02927 300 vlaaaeaaeeakeaaaaeaaaaapaapaaakka..pepeka 338
                 v aa++aa  a++aaaa aaaaa+   aaa++   ++ + +
  MMETSP1137-20121227|7892_1  21 VRAATSAATSAAAAAAAAAAAAAA--EAAATPDllTANKSS 59 
                 455555554444433333332222..223332222333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (340 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       192  (0.0468064); expected 82.0 (0.02)
Passed bias filter:                      107  (0.0260848); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.31u 0.15s 00:00:00.46 Elapsed: 00:00:00.39
# Mc/sec: 1150.67
//
Query:       MMETSP1137-20121227|7893_1  [L=232]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.03   11.9   0.0        3.3    5.3   0.0    2.1  2  TIGR02251 HIF-SF_euk: dullard-like phosphatase domain


Domain annotation for each model (and alignments):
>> TIGR02251  HIF-SF_euk: dullard-like phosphatase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   0.0    0.0008       3.3      28      68 ..      75     115 ..      59     126 .. 0.82
   2 ?    4.6   0.0    0.0013       5.3      30      69 ..     157     196 ..     122     200 .. 0.66

  Alignments for each domain:
  == domain 1    score: 5.3 bits;  conditional E-value: 0.0008
   TIGR02251  28 klevliekkiilvyVlkRPyvdeFlerlsklyelvvfTasl 68 
                   ++ i+kk+  v+V++ P v eF + l + y  +v   s+
  MMETSP1137-20121227|7893_1  75 YKNLRITKKHGSVFVIATPLVIEFRKPLRQNYGFIVMSGSV 115
                 556777889999***********************988776 PP

  == domain 2    score: 4.6 bits;  conditional E-value: 0.0013
   TIGR02251  30 evliekkiilvyVlkRPyvdeFlerlsklyelvvfTasle 69 
                   ++  + ++v    RP ++  + ++ +  e+ +fTa+++
  MMETSP1137-20121227|7893_1 157 ADSTWLHGMMVHYPSRPTLSPEMCQVLSSKEVAIFTAAQR 196
                 333333788888899******9***************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (232 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        68  (0.0165773); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.21u 0.11s 00:00:00.32 Elapsed: 00:00:00.67
# Mc/sec: 457.04
//
Query:       MMETSP1137-20121227|7894_1  [L=533]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.1e-06   26.3   0.0    0.00028   18.3   0.0    2.4  2  TIGR00633 xth: exodeoxyribonuclease III (xth)


Domain annotation for each model (and alignments):
>> TIGR00633  xth: exodeoxyribonuclease III (xth)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.0   6.7e-08   0.00028      20     128 ..     294     412 ..     283     429 .. 0.69
   2 !    5.3   0.0   0.00064       2.6      23      71 ..     448     502 ..     437     512 .. 0.71

  Alignments for each domain:
  == domain 1    score: 18.3 bits;  conditional E-value: 6.7e-08
   TIGR00633  20 lellkeekpDvlclQEtKvaeeqlpkell.....eeegYevafssakkk.gysGvallsk...eepesvrvgigaeeedeegr..vitaefdeltvvnvYvPngeardlerleyklefwe 128
                 ++++k  k D+++ QE  v++++l+  +         gY+ ++  + +  +  G+a+l      +  sv + + ++++ +  r    +  f++l+v+++Y P  + +++++l  k+   +
  MMETSP1137-20121227|7894_1 294 IATMKDDKIDIIAFQELNVHRNNLSVLEShkqtaIALGYKLFIAPTAEVsQIGGTAILVSlrmISEGSVATFLHSHPQGNYVRikLTNPIFGTLYVWSIYAPADG-TQRRNLFLKMALXA 412
                 688999**************98765433322334789*****99877545999***99762222223455545555554444454556679***********998.77777777775544 PP

  == domain 2    score: 5.3 bits;  conditional E-value: 0.00064
   TIGR00633  23 lkeekpDvlclQEtKvaeeql.....pkelleeegYevafssakkk.gysGvall 71 
                 + e k Dv++ QE  v+++++     +k++ +  gY+ ++  + +  +  G+a+l
  MMETSP1137-20121227|7894_1 448 MLEDKIDVVAFQELNVHRNNQriiesHKQTANALGYKLFMAPTAEVaQIGGTAVL 502
                 557899**********996541111133444888999998876654478888877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (533 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       147  (0.0358362); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.13s 00:00:00.49 Elapsed: 00:00:01.01
# Mc/sec: 696.54
//
Query:       MMETSP1137-20121227|7895_1  [L=63]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (63 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        77  (0.0187713); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.15s 00:00:00.27 Elapsed: 00:00:00.56
# Mc/sec: 148.49
//
Query:       MMETSP1137-20121227|7896_1  [L=104]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (104 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        97  (0.023647); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.09s 00:00:00.25 Elapsed: 00:00:00.30
# Mc/sec: 457.56
//
Query:       MMETSP1137-20121227|7897_1  [L=628]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (628 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       141  (0.0343735); expected 82.0 (0.02)
Passed bias filter:                      118  (0.0287665); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.16s 00:00:00.59 Elapsed: 00:00:00.50
# Mc/sec: 1657.78
//
Query:       MMETSP1137-20121227|7898_1  [L=72]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        39  (0.00950756); expected 82.0 (0.02)
Passed bias filter:                       39  (0.00950756); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.14s 00:00:00.27 Elapsed: 00:00:00.31
# Mc/sec: 306.56
//
Query:       MMETSP1137-20121227|7901_1  [L=153]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (153 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       120  (0.029254); expected 82.0 (0.02)
Passed bias filter:                      103  (0.0251097); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.16s 00:00:00.34 Elapsed: 00:00:00.25
# Mc/sec: 807.77
//
Query:       MMETSP1137-20121227|7902_1  [L=325]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00031   18.1   1.9       0.12    9.5   0.1    2.6  3  TIGR01978 sufC: FeS assembly ATPase SufC
     0.0047   14.4   0.0     0.0095   13.4   0.0    1.5  1  TIGR03263 guanyl_kin: guanylate kinase
  ------ inclusion threshold ------
      0.034   11.7   0.3       0.13    9.8   0.1    1.9  2  TIGR00624 tag: DNA-3-methyladenine glycosylase I
      0.034   10.5   0.0      0.066    9.5   0.0    1.3  1  TIGR00602 rad24: checkpoint protein rad24


Domain annotation for each model (and alignments):
>> TIGR01978  sufC: FeS assembly ATPase SufC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.3   0.0   0.00059       0.6      29      52 ..     105     129 ..      82     140 .. 0.80
   2 !    9.5   0.1   0.00012      0.12     166     204 ..     176     217 ..     173     228 .. 0.72
   3 ?   -1.9   0.2      0.37   3.8e+02      98     141 ..     280     323 ..     277     325 .] 0.81

  Alignments for each domain:
  == domain 1    score: 7.3 bits;  conditional E-value: 0.00059
   TIGR01978  29 haimGpnGsGkstLsk.vlagheky 52 
                  +++Gp G Gkst+ k vla ++k+
  MMETSP1137-20121227|7902_1 105 LVVVGPRGGGKSTVIKkVLAERPKV 129
                 689**********865166666654 PP

  == domain 2    score: 9.5 bits;  conditional E-value: 0.00012
   TIGR01978 166 aiLDeiDsGlDvDalkivaegvnklree...ekalliithye 204
                 +++ e+Ds  DvDa+++ +++v+++  +    +++++++  +
  MMETSP1137-20121227|7902_1 176 VLVVEMDSTTDVDAIRTQSQQVKQVCVDqtlAHGIIVLSDAS 217
                 45669******************9865533456667666554 PP

  == domain 3    score: -1.9 bits;  conditional E-value: 0.37
   TIGR01978  98 lrsalnavrkargeeeldllefekllkeklelleldeelleRsl 141
                 lr++++a+rka +++   l++++++ ++++ + + ++++leR++
  MMETSP1137-20121227|7902_1 280 LRAVAQAARKAAEKAVAALHDHATEADRQAVADRAEQQVLEREI 323
                 78889999988888888888898888888888888889999887 PP

>> TIGR03263  guanyl_kin: guanylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.0   9.3e-06    0.0095       3      29 ..     104     130 ..     102     137 .. 0.86

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 9.3e-06
   TIGR03263   3 livisgpsGvGKstlvkklleekeelk 29 
                  +v++gp G GKst++kk+l+e++++ 
  MMETSP1137-20121227|7902_1 104 YLVVVGPRGGGKSTVIKKVLAERPKVV 130
                 689******************988865 PP

>> TIGR00624  tag: DNA-3-methyladenine glycosylase I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0      0.23   2.4e+02     115     142 ..     121     148 ..     113     163 .. 0.73
   2 ?    9.8   0.1   0.00013      0.13      71     155 ..     193     274 ..     180     298 .. 0.77

  Alignments for each domain:
  == domain 1    score: -0.9 bits;  conditional E-value: 0.23
   TIGR00624 115 sfvndkpqvrqrkadseipsvsseskal 142
                    +++p+v   + +s+ip+++ + ++ 
  MMETSP1137-20121227|7902_1 121 KVLAERPKVVYVELSSDIPTIAGKLRSR 148
                 556789999999999****998776554 PP

  == domain 2    score: 9.8 bits;  conditional E-value: 0.00013
   TIGR00624  71 tdadverlllddgivrnrakieatianaraalelesed.lvellwsfvndkpqvrqrkadseipsvsseskalskelkkrgfrfvg 155
                 + ++v+++ +d+ +  +      ++++a aa +l+ +    ++lw    d+ +++ + +++ +     +++a s++l+kr f+ +g
  MMETSP1137-20121227|7902_1 193 QSQQVKQVCVDQTL-AHG---IIVLSDASAAFKLNPDXxRQDFLWVDDFDESEMQAFLDKTGVLPAQGKATATSRGLRKRFFNELG 274
                 55566666666622.222...235678999999987664789***99999************999999************888766 PP

>> TIGR00602  rad24: checkpoint protein rad24
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   0.0   6.4e-05     0.066     103     131 ..      95     124 ..      84     138 .. 0.76

  Alignments for each domain:
  == domain 1    score: 9.5 bits;  conditional E-value: 6.4e-05
   TIGR00602 103 qvLeskkkriLLitGPsGCgKsTvik.iLs 131
                 +v + ++ + L + GP G gKsTvik +L+
  MMETSP1137-20121227|7902_1  95 HVSNDQPVKYLVVVGPRGGGKSTVIKkVLA 124
                 4556678889***************72555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (325 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       357  (0.0870307); expected 82.0 (0.02)
Passed bias filter:                      239  (0.0582643); expected 82.0 (0.02)
Passed Vit filter:                        53  (0.0129205); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.37u 0.19s 00:00:00.56 Elapsed: 00:00:00.43
# Mc/sec: 997.59
//
Query:       MMETSP1137-20121227|7903_1  [L=204]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (204 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        56  (0.0136519); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.14s 00:00:00.32 Elapsed: 00:00:00.49
# Mc/sec: 549.51
//
Query:       MMETSP1137-20121227|7904_1  [L=679]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (679 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       229  (0.0558264); expected 82.0 (0.02)
Passed bias filter:                      109  (0.0265724); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.15s 00:00:00.61 Elapsed: 00:00:00.53
# Mc/sec: 1690.95
//
Query:       MMETSP1137-20121227|7905_1  [L=434]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (434 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        93  (0.0226719); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.25s 00:00:00.43 Elapsed: 00:00:00.43
# Mc/sec: 1332.17
//
Query:       MMETSP1137-20121227|7906_1  [L=726]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.6e-12   43.5   0.0    6.8e-12   42.6   0.0    1.4  1  TIGR00653 GlnA: glutamine synthetase, type I
      6e-10   36.0   0.0    5.4e-09   32.9   0.0    2.2  2  TIGR03105 gln_synth_III: glutamine synthetase, type III


Domain annotation for each model (and alignments):
>> TIGR00653  GlnA: glutamine synthetase, type I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.6   0.0   3.3e-15   6.8e-12     123     277 ..     235     380 ..     202     396 .. 0.73

  Alignments for each domain:
  == domain 1    score: 42.6 bits;  conditional E-value: 3.3e-15
   TIGR00653 123 fGpEaEFflfdkvefkeasnssflevdseegewnreveegnkgykikkkggYfdvepvDkakdirrelvlaleelglevevsHHEvataqaEidikfdklvkaaDeivlyKyvvknvakkhGktatFmpKplfgdngsGmHvhlslwk.dgenlfa 277
                 +G E+EFfl  ++e  ++  +  ++  ++    +++ + g++      ++ Y+ +  +  a  +  e+ ++   +g+ +++ H Eva+ q E +  f +++++ D+ +++ +v+  va++hG+      Kp++g ngsG H ++sl    g nl++
  MMETSP1137-20121227|7906_1 235 IGLEQEFFLVPRKEYYRR-PDLQFTGRTIL---GKSAPRGQE-----MCDHYMGPL-NPIAAACIAEIQHECFMMGIPLKTRHREVAPNQYECAPFFGTATTQIDQNLMVMQVMDEVAARHGLACLLQEKPFTGVNGSGKHNNFSLGTdTGVNLLN 380
                 666777777666666644.33333322222...244444422.....222333221.112344556777777789***********************************************************************8835777765 PP

>> TIGR03105  gln_synth_III: glutamine synthetase, type III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.9   0.0   2.6e-12   5.4e-09     116     257 ..     234     386 ..     197     407 .. 0.75
   2 ?   -0.2   0.0     0.028        58     314     351 ..     483     519 ..     463     541 .. 0.76

  Alignments for each domain:
  == domain 1    score: 32.9 bits;  conditional E-value: 2.6e-12
   TIGR03105 116 ktGveceffllrree.........dgklsvaDkaDklakpcYDqralmr..rydvleeisealnelGwdlYqiDheDanGqfelnfeyaDalttaDrvaffkylvkeiaeeegllatfmPkPfadrtGnGlhlhlslldedgknlfaddadee 257
                 ++G+e effl+ r+e          g++ +  +a + ++ c  + +  +      ++ei +    +G+ l +   e a  q+e    +  a t  D+  ++  ++ e+a+++gl + +  kPf+   G+G h ++sl  ++g nl + ++ ++
  MMETSP1137-20121227|7906_1 234 NIGLEQEFFLVPRKEyyrrpdlqfTGRTILGKSAPRGQEMCDHYMGPLNpiAAACIAEIQHECFMMGIPLKTRHREVAPNQYECAPFFGTATTQIDQNLMVMQVMDEVAARHGLACLLQEKPFTGVNGSGKHNNFSLGTDTGVNLLNPASIHK 386
                 566666666666554222111111233333334444444454454444411335788888888999999999999*********************************************************************998776555 PP

  == domain 2    score: -0.2 bits;  conditional E-value: 0.028
   TIGR03105 314 nnRthmvRiP.dagRlelRlaDgaanpYlvsaavlaaGL 351
                  nRt     P +++R+e+R   ++ n  +v++++ +   
  MMETSP1137-20121227|7906_1 483 RNRTS--PFPyGGHRFEFRAVGSSQNVSMVNTVLCTIFA 519
                 44444..4566799************9999988766555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (726 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       109  (0.0265724); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.30u 0.32s 00:00:00.62 Elapsed: 00:00:00.72
# Mc/sec: 1330.89
//
Query:       MMETSP1137-20121227|7907_1  [L=338]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (338 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       532  (0.129693); expected 82.0 (0.02)
Passed bias filter:                      111  (0.02706); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.21s 00:00:00.47 Elapsed: 00:00:00.50
# Mc/sec: 892.25
//
Query:       MMETSP1137-20121227|7908_1  [L=103]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (103 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        90  (0.0219405); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.17s 00:00:00.26 Elapsed: 00:00:00.28
# Mc/sec: 485.53
//
Query:       MMETSP1137-20121227|7909_1  [L=38]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (38 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        24  (0.0058508); expected 82.0 (0.02)
Passed bias filter:                       24  (0.0058508); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.18s 00:00:00.28 Elapsed: 00:00:00.42
# Mc/sec: 119.42
//
Query:       MMETSP1137-20121227|7910_1  [L=205]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (205 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        41  (0.00999512); expected 82.0 (0.02)
Passed bias filter:                       40  (0.00975134); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.12s 00:00:00.31 Elapsed: 00:00:00.31
# Mc/sec: 872.83
//
Query:       MMETSP1137-20121227|7911_1  [L=70]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        48  (0.0117016); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.33
# Mc/sec: 279.98
//
Query:       MMETSP1137-20121227|7912_1  [L=757]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      6e-34  115.3   0.0    1.1e-16   58.5   0.1    2.7  2  TIGR01733 AA-adenyl-dom: amino acid adenylation domain
    2.4e-26   90.1   0.0    9.1e-18   61.8   0.0    2.1  2  TIGR03098 ligase_PEP_1: acyl-CoA ligase (AMP-forming), exosortase A-associated
    1.7e-25   87.6   0.0    2.8e-12   44.1   0.0    2.6  2  TIGR01923 menE: O-succinylbenzoate-CoA ligase
    4.5e-20   69.4   0.5    1.1e-09   35.1   0.0    2.2  2  TIGR03205 pimA: dicarboxylate--CoA ligase PimA
    4.2e-16   56.6   0.0      3e-13   47.1   0.0    2.6  2  TIGR02262 benz_CoA_lig: benzoate-CoA ligase family
    9.9e-15   52.1   0.2    1.8e-06   24.8   0.0    2.4  2  TIGR03208 cyc_hxne_CoA_lg: cyclohexanecarboxylate-CoA ligase
      1e-14   51.8   0.0    2.3e-06   24.3   0.0    2.9  3  TIGR01734 D-ala-DACP-lig: D-alanine--poly(phosphoribitol) ligase, subunit 1
    4.6e-13   46.1   0.0    9.1e-11   38.5   0.0    2.1  2  TIGR02188 Ac_CoA_lig_AcsA: acetate--CoA ligase
    1.2e-07   28.2   0.0    0.00016   17.9   0.0    2.8  2  TIGR02275 DHB_AMP_lig: (2,3-dihydroxybenzoyl)adenylate synthase
    3.1e-05   20.6   0.0      6e-05   19.7   0.0    1.4  1  TIGR02316 propion_prpE: propionate--CoA ligase
    6.6e-05   18.2   0.0     0.0013   14.0   0.0    2.2  3  TIGR03443 alpha_am_amid: L-aminoadipate-semialdehyde dehydrogenase
  ------ inclusion threshold ------
      0.015   11.3   0.1       0.06    9.3   0.1    1.8  2  TIGR01217 ac_ac_CoA_syn: acetoacetate-CoA ligase


Domain annotation for each model (and alignments):
>> TIGR01733  AA-adenyl-dom: amino acid adenylation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.5   0.1   3.3e-19   1.1e-16       1     155 [.     142     331 ..     142     372 .. 0.82
   2 !   53.2   0.0   1.2e-17   4.3e-15     249     405 ..     482     647 ..     459     650 .. 0.75

  Alignments for each domain:
  == domain 1    score: 58.5 bits;  conditional E-value: 3.3e-19
   TIGR01733   1 tYreLderanrlAraLkeaggvrpgdrVavllersvelvvailavlkaGaayvpldpeyPaeRlaailedakakllltdeelaeelaeval...........eailleeleekaaedasaeeaaeak.................................skpddlayviyTSGStGkPKgVlvehrslvnllaslarr 155
                 tY+e +++  +l+  + + + ++pgd V++++e +++ + + +a +    + v + ++  +e la+ ++++kakl+++d++l ++++++a+            +++ +++++ + ++         +                                 +k++d+a v+yTSG+tG PKgV+++h+++v+ ++ +++r
  MMETSP1137-20121227|7912_1 142 TYGEYRTALHALGGGMVKFAXLKPGDHVVIYAETQLDWMLSCIAAFSQSLVVVTVYATLGEEGLAHGVKQTKAKLIIADSKLLPKVSAAARkhkesmgncnhVIAISDPVQTPDPKN---------EsvvsaalreltesgwksqtldeaianagippnpPKAEDTAVVMYTSGTTGLPKGVIITHANIVSCASGFVER 331
                 99***************9889*************************************************************99999888767676666553111122222222222.........1233334556788889999999999999999999999999************************998877763 PP

  == domain 2    score: 53.2 bits;  conditional E-value: 1.2e-17
   TIGR01733 249 aelverlraraeevrlinlYGpTEttvvvtveevsadeeseeepvpiGrplanvrlyvldea.........lrpvpvgvvGELyigGagvarGYlnrpeltaerFvedpfaksege....rlYrTGDlvrlradGeleflGRaDdqvKi.rGfRielgEieaalaelpgve 405
                 + +v+ + ++a ++   ++YG TEt+ +++v+    d+++      +G p + + + + d +         ++p      GE +igG+ v +GYl +p+   +  v+++ ++ +      r+++TGD++++++dG+l+++ R+ d vK+ +G  + l+ +e+al+++p ve
  MMETSP1137-20121227|7912_1 482 SPKVQAFVQTAFNAPCRQGYGLTETCAATCVQM-GCDNTTG----AVGPPTPSACIKLKDWEegnyknadlHNPEVGMRRGEVLIGGPLVCSGYLVDPDDPDADVVQKNKEEFSVDekgvRWFHTGDIGQFTPDGNLQIIDRKKDLVKLqQGEYVALSKVENALKACPLVE 647
                 445566555555788999*******99887654.3333334....467777766666665443333322322333334579*******************99999988766544334567****************************955****************9997 PP

>> TIGR03098  ligase_PEP_1: acyl-CoA ligase (AMP-forming), exosortase A-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.8   0.0   2.7e-20   9.1e-18      22     194 ..     137     327 ..     117     341 .. 0.76
   2 !   26.1   0.0   1.7e-09   5.9e-07     296     446 ..     488     648 ..     460     669 .. 0.75

  Alignments for each domain:
  == domain 1    score: 61.8 bits;  conditional E-value: 2.7e-20
   TIGR03098  22 kdrtltyaaLseevkalasgl.kalglkrgeRvaiylekrletvlalfaaslaggvfvpinPlLkaeqvayilkDcnvkllvtskerldaledalak....chdlrtlilvdepekasekka.gaevlsweklkaleeaa............akvdvidddlaailYtsGstGrPkgvvlshrnlvaGaks 194
                 +   +ty + + + +al  g+ k   lk g+ v iy+e +l+ +l+ +aa   + v v +   L +e +a+ +k +++kl+++ ++ l +++ a+ k    + + +++i + +p ++   k+  + + ++++l+  + +             ++ +   +d a ++YtsG tG Pkgv+++h+n+v  a+ 
  MMETSP1137-20121227|7912_1 137 EYTWMTYGEYRTALHALGGGMvKFAXLKPGDHVVIYAETQLDWMLSCIAAFSQSLVVVTVYATLGEEGLAHGVKQTKAKLIIADSKLLPKVSAAARKhkesMGNCNHVIAISDPVQTPDPKNeSVVSAALRELTESGWKSqtldeaianagiPPNPPKAEDTAVVMYTSGTTGLPKGVIITHANIVSCASG 327
                 445678888888888887765155679*************************************************************888776554111155789*******99887766533333444444322211111122224445677778889**************************99975 PP

  == domain 2    score: 26.1 bits;  conditional E-value: 1.7e-09
   TIGR03098 296 lRkllpeaklylmYGLteafRstyLdPeevdrrPdsiGkaipnaevlvlr.edGsecape....e....eGelvhrGalvakGYWndpekt.aerfrplpkrqselkltelavfsGDlvrrDeeGflyfvgRrdemikt.sGyRvsPteveevllatglvae 446
                 + +++ +a     YGLte   +t ++    d+  +++G   p a +     e+G+  +++    e     Ge+   G+lv  GY  dp+   a + +++ ++ s  ++  +  + GD+++   +G l ++ R+ +++k   G  v+   ve++l a +lv+ 
  MMETSP1137-20121227|7912_1 488 FVQTAFNAPCRQGYGLTETCAATCVQ-MGCDNTTGAVGPPTPSACIKLKDwEEGNYKNADlhnpEvgmrRGEVLIGGPLVCSGYLVDPDDPdADVVQKNKEEFSVDEKGVRWFHTGDIGQFTPDGNLQIIDRKKDLVKLqQGEYVALSKVENALKACPLVEM 648
                 55555566666779999999888887.45799999999999999888764366664433222223222269*****************986155555555555555555566779***********************637******************986 PP

>> TIGR01923  menE: O-succinylbenzoate-CoA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.4   0.0     1e-13   3.5e-11      21     179 ..     163     369 ..     155     383 .. 0.75
   2 !   44.1   0.0   8.1e-15   2.8e-12     248     386 ..     494     658 ..     459     665 .. 0.79

  Alignments for each domain:
  == domain 1    score: 40.4 bits;  conditional E-value: 1e-13
   TIGR01923  21 vrkgdvvallaenslelvllllallllgveiallntrLtekelttqlkelkvellltdslleekedlqaisldeleaeae..........................aeevs.................ls.asfsldkiatlifTSgstGkpKavvqtfrnhyasavgsaeklg.f......tesdnWLlsLPlyHvsGlsilfralleg 179
                 ++ gd v ++ae +l+ +l+ +a++  + +++ +   L e+ l++ +k++k +l+++ds+l  k+   a + +e + + +                                                +     + +++a++++TSg+tG pK+v +t+ n++  a g  e++  f       ++  +L  LPl H+  +++ + ++  g
  MMETSP1137-20121227|7912_1 163 LKPGDHVVIYAETQLDWMLSCIAAFSQSLVVVTVYATLGEEGLAHGVKQTKAKLIIADSKLLPKVSAAARKHKESMGNCNhviaisdpvqtpdpknesvvsaalreL---TesgwksqtldeaianagIPpNPPKAEDTAVVMYTSGTTGLPKGVIITHANIVSCASGFVERMMtFfdikrdGPKHVYLGYLPLAHIMEIALEIMVISVG 369
                 677999********************************************************777555555555544444678887777777766666666655550...05555556666666455533033478********************************999874232222222456799999999997766655555555 PP

  == domain 2    score: 44.1 bits;  conditional E-value: 8.1e-15
   TIGR01923 248 glpiyksyGmTEtasqvvtlevevlkaktdsvGkplasveikikvdd..............keghgeilvkganlmkgYl...........ekgelteaveeqG..wlktgDlgeldgegfllvldRrddli.ISGGENiypeeiEkvlkslpevqeavvvpkeDse 386
                 + p  ++yG TEt++  +   +  ++  t++vG p +s  ik+k  +                  ge+l+ g+ +  gYl           +k++ +  v+e+G  w++tgD+g++  +g+l + dR++dl+ +  GE +   ++E++lk  p v+  ++ ++  + 
  MMETSP1137-20121227|7912_1 494 NAPCRQGYGLTETCAATCVQ-MGCDN-TTGAVGPPTPSACIKLKDWEegnyknadlhnpevGMRRGEVLIGGPLVCSGYLvdpddpdadvvQKNKEEFSVDEKGvrWFHTGDIGQFTPDGNLQIIDRKKDLVkLQQGEYVALSKVENALKACPLVEMPMCYARSSES 658
                 457779********976654.44444.4789************7655678999999987666678**************944333222221222222345667788*************************96899********************99998876655 PP

>> TIGR03205  pimA: dicarboxylate--CoA ligase PimA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.4   0.1   2.1e-11   7.2e-09      74     254 ..     169     360 ..     139     375 .. 0.68
   2 !   35.1   0.0   3.2e-12   1.1e-09     314     469 ..     471     646 ..     465     653 .. 0.73

  Alignments for each domain:
  == domain 1    score: 32.4 bits;  conditional E-value: 2.1e-11
   TIGR03205  74 valylgntpdhpinffgalkagarvvhlspldgeralshklsdsgarllitsd.laallp.malkfle.kglldrlivcedeswgkvgtpkaaipadprivt...ya.dfvkgaakpaewpav..kaddvallqytggttglpkgamlthgnltsavsiy..dvwgkrsraergd.vervicvlplfhiyalt 254
                 v +y     d  +  + a+     vv +    ge  l+h + ++ a+l+i+   l   +   a k  e  g  + +i  +d       + ++ + a  r +t   ++ + +++a + a  p    ka+d a++ yt gttglpkg ++th+n+ s+ s +   +       +r++  +  +  lpl hi  ++
  MMETSP1137-20121227|7912_1 169 VVIYAETQLDWMLSCIAAFSQSLVVVTVYATLGEEGLAHGVKQTKAKLIIADSkLLPKVSaAARKHKEsMGNCNHVIAISDPVQTPDPKNESVVSAALRELTesgWKsQTLDEAIANAGIPPNppKAEDTAVVMYTSGTTGLPKGVIITHANIVSCASGFveRMMTF-FDIKRDGpKHVYLGYLPLAHIMEIA 360
                 55666666777777788888888889999999999999999999999888643133333314455554247888999998877766666666666666666522222123344444444443212789**************************9888552133333.4444544266667889999997543 PP

  == domain 2    score: 35.1 bits;  conditional E-value: 3.2e-12
   TIGR03205 314 latigsggaplpvevaklferkvglklksgwgmtetcspgtghplegpdkpgsiglmlpgieldvvsldd...pkkvlppgev....gelrirgpnvtrgywnraee........saeaf.vgdr....fltgdigyvdrdgyfflvdrkkdmi.isggfnvypqmieqaiyelpav 469
                 l  +g+g apl  +v  + +   +   + g+g+tetc+  t+  +   +  g++g   p   + +   ++    +  l   ev    ge+ i gp v  gy   +++        + e f v+++    f tgdig +  dg + ++drkkd++ +  g  v    +e+a+   p v
  MMETSP1137-20121227|7912_1 471 LVFAGTGSAPLSPKVQAFVQTAFNAPCRQGYGLTETCAA-TCVQMGCDNTTGAVGPPTPSACIKLKDWEEgnyKNADLHNPEVgmrrGEVLIGGPLVCSGYLVDPDDpdadvvqkNKEEFsVDEKgvrwFHTGDIGQFTPDGNLQIIDRKKDLVkLQQGEYVALSKVENALKACPLV 646
                 6789*********************************86.444555556678999888876555554443111334566666623336999**********988765211111113344435543455689*********************9845677778888888888877766 PP

>> TIGR02262  benz_CoA_lig: benzoate-CoA ligase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.1   0.0   8.9e-16     3e-13      18     198 ..     128     333 ..     113     337 .. 0.74
   2 !    6.0   0.0    0.0026      0.89     288     430 ..     479     644 ..     454     651 .. 0.71

  Alignments for each domain:
  == domain 1    score: 47.1 bits;  conditional E-value: 8.9e-16
   TIGR02262  18 rgdklafiddvsslsygeleaevrrva.aalrrlGvkreervllvlldtvdfpivflGairaGivpvalntlltaddyaylledsrarvvlvseellpvlkevlak....lpdleklvvvgak.....pagekqlaell....at...eseqek........aaatkaddpafwlyssGstGapkGvvhvhsnlrvtaelyarkvl 198
                   +kl+f d+ + ++yge +++ + ++  +++   +k+ + v++     +d+ +  + a    +v v++ + l ++  a+ +++++a+ +++ ++llp + +++ k    + + +++++++++     p+ e+ +++ l     +    +   +        + + ka+d+a  +y+sG+tG pkGv+ +h+n+   a  +  +++
  MMETSP1137-20121227|7912_1 128 EVEKLTFADEYTWMTYGEYRTALHALGgGMVKFAXLKPGDHVVIYAETQLDWMLSCIAAFSQSLVVVTVYATLGEEGLAHGVKQTKAKLIIADSKLLPKVSAAARKhkesMGNCNHVIAISDPvqtpdPKNESVVSAALreltESgwkSQTLDEaianagipPNPPKAEDTAVVMYTSGTTGLPKGVIITHANIVSCASGFVERMM 333
                 2489******************9998625777889****************************************************************999987622224567899999987654322222222222211111111112222211111111345689**************************999988877665 PP

  == domain 2    score: 6.0 bits;  conditional E-value: 0.0026
   TIGR02262 288 ealpeevGkrwkarfGvdildGvGstellhiflsnlpddvkyGtsGkpvpGyrlrlvd.dggedvadg....ev....Gellvsgpssaagywnnre........ksratfe....G.ewtrsGdkyvrnddGsytyaGrtddllkv.sGiyvspfevesaliahe 430
                  +l  +v    ++ f     +G G te        +  d   G+ G p p   ++l d ++g+   ++    ev    Ge+l+ gp  ++gy  +++        k ++ f     G  w ++Gd      dG+     r  dl+k+  G yv+  +ve+al a +
  MMETSP1137-20121227|7912_1 479 APLSPKVQAFVQTAFNAPCRQGYGLTETCAATCVQMGCDNTTGAVGPPTPSACIKLKDwEEGNYKNADlhnpEVgmrrGEVLIGGPLVCSGYLVDPDdpdadvvqKNKEEFSvdekGvRWFHTGDIGQFTPDGNLQIIDRKKDLVKLqQGEYVALSKVENALKACP 644
                 55666677777777777788888888888888888888888888888888888888887555544333222222222378999999999998866532222222266666752222236***************************8459***********97655 PP

>> TIGR03208  cyc_hxne_CoA_lg: cyclohexanecarboxylate-CoA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.2   0.0   8.2e-09   2.8e-06     189     256 ..     290     364 ..     267     371 .. 0.72
   2 !   24.8   0.0   5.3e-09   1.8e-06     319     466 ..     478     647 ..     463     683 .. 0.76

  Alignments for each domain:
  == domain 1    score: 24.2 bits;  conditional E-value: 8.2e-09
   TIGR03208 189 gdrlspddvtqliytsgttgepkgvmhtantllsnilayaerlel.......gegdvilmaspmahqtgfmyglm 256
                  + +  +d + ++ytsgttg pkgv+ t   ++s    ++er+         g   v l+  p+ah    +  +m
  MMETSP1137-20121227|7912_1 290 PNPPKAEDTAVVMYTSGTTGLPKGVIITHANIVSCASGFVERMMTffdikrdGPKHVYLGYLPLAHIMEIALEIM 364
                 4456779***********************************953222221134467777777777766655555 PP

  == domain 2    score: 24.8 bits;  conditional E-value: 5.3e-09
   TIGR03208 319 gapipgalverarealgakivsawgmtengavtvtkpddaeekasvtdglplpgvevkvidad.....gaklsagevg....rllvraasnfggylkrp........hln....avdaeg..wfdtgdlafldaegyiriagrskdvi.irggenipvveieallykhpava 466
                  ap+ + +    ++a+ a     +g+te+ a t +++  ++   +v  g p p   +k+ d +     +a l + evg    ++l+ +    +gyl  p        + n    +vd +g  wf tgd+ + + +g ++i  r+kd++ ++ ge + + ++e+ l   p v 
  MMETSP1137-20121227|7912_1 478 SAPLSPKVQAFVQTAFNAPCRQGYGLTETCAATCVQMGCDNTTGAV--GPPTPSACIKLKDWEegnykNADLHNPEVGmrrgEVLIGGPLVCSGYLVDPddpdadvvQKNkeefSVDEKGvrWFHTGDIGQFTPDGNLQIIDRKKDLVkLQQGEYVALSKVENALKACPLVE 647
                 4899999999999***********************9988877766..6666666666666441112256788888853322799***99******88733333222223333378888888************************885799************99988775 PP

>> TIGR01734  D-ala-DACP-lig: D-alanine--poly(phosphoribitol) ligase, subunit 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.0     0.077        26      16     108 ..     131     224 ..     118     256 .. 0.83
   2 !   24.3   0.0   6.7e-09   2.3e-06     140     172 ..     294     326 ..     261     341 .. 0.82
   3 !   22.5   0.0   2.3e-08   7.9e-06     342     432 ..     555     655 ..     485     683 .. 0.79

  Alignments for each domain:
  == domain 1    score: 1.0 bits;  conditional E-value: 0.077
   TIGR01734  16 liayeeegqeltykeLkeesdklaaalqerl.leekePiivfGkqefemlvaflgsiksGhayiPvDtsipleriekikeaaepelvievaels 108
                   +++ e + +ty e   +  +l+  + + + l+  + ++++ +++ + + + +++  +    + v +   +e +++  ++++++l+i+ ++l 
  MMETSP1137-20121227|7912_1 131 KLTFADEYTWMTYGEYRTALHALGGGMVKFAxLKPGDHVVIYAETQLDWMLSCIAAFSQSLVVVTVYATLGEEGLAHGVKQTKAKLIIADSKLL 224
                 56677777888999999999999887766554888999*********99999999999999999999999999999999999999999887764 PP

  == domain 2    score: 24.3 bits;  conditional E-value: 6.7e-09
   TIGR01734 140 keddnyyiiytsGstGkPkGvqishdnLvsftn 172
                 k +d+  ++ytsG+tG PkGv i h+n+vs + 
  MMETSP1137-20121227|7912_1 294 KAEDTAVVMYTSGTTGLPKGVIITHANIVSCAS 326
                 6799*************************9554 PP

  == domain 3    score: 22.5 bits;  conditional E-value: 2.3e-08
   TIGR01734 342 ekGeivivGdsvskGylnnpe........kteeaff.eaegkrayrtGDagtieddgllfyqGrlDfqikln.GyrieLedieanlkkskyikeavvvPky 432
                  +Ge++i G+ v  Gyl +p+        k +e f  +++g r ++tGD g+++ dg l +  r    +kl+ G  + L  +e+ lk    ++  +   + 
  MMETSP1137-20121227|7912_1 555 RRGEVLIGGPLVCSGYLVDPDdpdadvvqKNKEEFSvDEKGVRWFHTGDIGQFTPDGNLQIIDRKKDLVKLQqGEYVALSKVENALKACPLVEMPMCYARS 655
                 58***************998622233332444555415678999********************9999**954999**********999888876666555 PP

>> TIGR02188  Ac_CoA_lig_AcsA: acetate--CoA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.5   0.0   2.7e-13   9.1e-11      87     280 ..     138     340 ..     117     348 .. 0.73
   2 !    5.3   0.0     0.003         1     480     527 ..     598     646 ..     583     663 .. 0.87

  Alignments for each domain:
  == domain 1    score: 38.5 bits;  conditional E-value: 2.7e-13
   TIGR02188  87 srkltYaellrevcrlanvlke.lGvkkgdrvaiYlpmipeaviamlacaRiGavhsvvfaGfsaealaeRivdaeaklvitadeglRggkvielkkivdealekaee..svekvlvvkrtgee.va..ewkegrDvwweelvek..easaecepekldsedplfiLYtsGstGkPkGvlhttgGylllaa...ltvkyvfdikd 280
                    +tY e  +    l   + + + +k gd+v+iY     + ++  +a+     v   v+a    e la+ +++++akl+i+  + l +  + + k    e++ ++++  ++++ +     ++e v+  +++e  +  w++ + +   a+a ++p++ ++ed   ++YtsG+tG PkGv+ t +  + +a+     + + fdik 
  MMETSP1137-20121227|7912_1 138 YTWMTYGEYRTALHALGGGMVKfAXLKPGDHVVIYAETQLDWMLSCIAAFSQSLVVVTVYATLGEEGLAHGVKQTKAKLIIADSKLLPKVSAAARK--HKESMGNCNHviAISDPVQTPDPKNEsVVsaALRELTESGWKSQTLDeaIANAGIPPNPPKAEDTAVVMYTSGTTGLPKGVIITHANIVSCASgfvERMMTFFDIKR 340
                 55678888888887776655443789*****************************************************99877766655555444..4566666665445555444443333313211344445555554443323678999***************************9999877766411144556677774 PP

  == domain 2    score: 5.3 bits;  conditional E-value: 0.003
   TIGR02188 480 lyftGDgarrdkdGyiwilGRvDdvinv.sGhrlgtaeiesalvsheav 527
                  ++tGD  +   dG ++i+ R  d++++  G  ++ + +e+al + + v
  MMETSP1137-20121227|7912_1 598 WFHTGDIGQFTPDGNLQIIDRKKDLVKLqQGEYVALSKVENALKACPLV 646
                 799***********************98459999********9877665 PP

>> TIGR02275  DHB_AMP_lig: (2,3-dihydroxybenzoyl)adenylate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.7   0.0    0.0012      0.39      35     234 ..     127     355 ..     100     362 .. 0.55
   2 !   17.9   0.0   4.8e-07   0.00016     377     456 ..     555     647 ..     451     682 .. 0.73

  Alignments for each domain:
  == domain 1    score: 6.7 bits;  conditional E-value: 0.0012
   TIGR02275  35 kkpdaiaiicgerkfsyrelderadnlaasltk.lGikkgdtavvqlpniaefyivffallklGvaPvlalfshrkselkayaeqieaalliidrahslfdedalare.................lkaklstlkvvivag.keveee..lksaleslaee..vkleetkadevaffqlsGGstGtpkliPrthddyaysvrrsve.......iceltqqtrylcalPaah 234
                 k+ ++++  ++ + ++y e  ++ ++l  ++ k + +k gd++v+      ++ +   a + + ++ v    +  +  l   ++q++a+l+i+d++  + + +a ar+                 +++  ++ + v+ a+ +e +e+  ++++l+++ ++  +  ++ ka++ a +  + G+tG+pk +  th + +      ve       i +   + +yl  lP ah
  MMETSP1137-20121227|7912_1 127 KEVEKLTFADEYTWMTYGEYRTALHALGGGMVKfAXLKPGDHVVIYAETQLDWMLSCIAAFSQSLVVVTVYATLGEEGLAHGVKQTKAKLIIADSKLLP-KVSAAARKhkesmgncnhviaisdpVQTPDPKNESVVSAAlRELTESgwKSQTLDEAIANagIPPNPPKAEDTAVVMYTSGTTGLPKGVIITHANIVSCASGFVErmmtffdIKRDGPKHVYLGYLPLAH 355
                 556667777777777788888888888777655256788888888877777777777777777777776666666667777777777777777654322.2222222200000000000000000222223333333333222222212444555554442345557789999999999999999999999998876654444442211111333334566777777777 PP

  == domain 2    score: 17.9 bits;  conditional E-value: 4.8e-07
   TIGR02275 377 eaGrlltrGPytirGyykae........ehnakaf..daeG..fyitGdlvkltkeGyivveGrakdqin.rGGekiaaeeienlllkhpavi 456
                   G +l+ GP    Gy   +        + n++ f  d++G  ++ tGd+ ++t++G + +  r+kd +  + Ge +a  ++en l + p v 
  MMETSP1137-20121227|7912_1 555 RRGEVLIGGPLVCSGYLVDPddpdadvvQKNKEEFsvDEKGvrWFHTGDIGQFTPDGNLQIIDRKKDLVKlQQGEYVALSKVENALKACPLVE 647
                 4677899999999999876522223333467666633667755699**********************98578************98888765 PP

>> TIGR02316  propion_prpE: propionate--CoA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.0   1.7e-07     6e-05      98     272 ..     156     339 ..     116     345 .. 0.73

  Alignments for each domain:
  == domain 1    score: 19.7 bits;  conditional E-value: 1.7e-07
   TIGR02316  98 salralgvrrgdrvliylpmiaeaalallacarigaihsvvfggfashslaariddatpklivs.......adagarggkvieykklldaaiaeaqh..kpahvllvdrglaklrrvpgrdvdyaalrrqhedadvevewlesnepsyilytsgttgkpkgv...qrdvggyavalaasmdaifgak 272
                  +++   ++ gd v+iy  +  + +l+ +a      +   v+  +  + la  + +++ kli++         a ar  k          ai++ ++  +p+   +v+  l +l++         +l +   +a ++ +  +++++++++ytsgttg pkgv     ++   a ++   m + f++k
  MMETSP1137-20121227|7912_1 156 GMVKFAXLKPGDHVVIYAETQLDWMLSCIAAFSQSLVVVTVYATLGEEGLAHGVKQTKAKLIIAdskllpkVSAAARKHKESMGNCNHVIAISDPVQtpDPKNESVVSAALRELTESG---WKSQTLDEAIANAGIPPNPPKAEDTAVVMYTSGTTGLPKGViitHANIVSCASGFVERMMTFFDIK 339
                 4677777899*******99999999999999999999999999999************999986222222223555555533333333334554444124677788888888877665...45678889999999**************************93334567778888889999999987 PP

>> TIGR03443  alpha_am_amid: L-aminoadipate-semialdehyde dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.0      0.77   2.6e+02     270     313 ..     140     184 ..     129     203 .. 0.78
   2 ?    1.8   0.0     0.018         6     417     438 ..     298     319 ..     206     341 .. 0.92
   3 !   14.0   0.0   3.7e-06    0.0013     669     735 ..     587     655 ..     567     717 .. 0.81

  Alignments for each domain:
  == domain 1    score: -3.6 bits;  conditional E-value: 0.77
   TIGR03443 270 eftykqideasnilahyllk.tGikrgdvvmvyasrgvdlvvavl 313
                  +ty +   a   l+  ++k + +k gd v++ya   +d +++ +
  MMETSP1137-20121227|7912_1 140 WMTYGEYRTALHALGGGMVKfAXLKPGDHVVIYAETQLDWMLSCI 184
                 56777777777777766665367999************9998765 PP

  == domain 2    score: 1.8 bits;  conditional E-value: 0.018
   TIGR03443 417 nptlsftsGseGiPkGvkGrhf 438
                 ++ + +tsG++G+PkGv   h 
  MMETSP1137-20121227|7912_1 298 TAVVMYTSGTTGLPKGVIITHA 319
                 566789***********88775 PP

  == domain 3    score: 14.0 bits;  conditional E-value: 3.7e-06
   TIGR03443 669 refwlgpr.drlyrtGdlGrylPdGnvecsGraddqvkir.GfrielGeidthlsrhPlvrenvtlvrr 735
                 +ef +  +  r ++tGd+G+++PdGn +   r  d vk++ G  + l  ++  l   Plv   +   r 
  MMETSP1137-20121227|7912_1 587 EEFSVDEKgVRWFHTGDIGQFTPDGNLQIIDRKKDLVKLQqGEYVALSKVENALKACPLVEMPMCYARS 655
                 345333331589**************************954999**************99877766665 PP

>> TIGR01217  ac_ac_CoA_syn: acetoacetate-CoA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   0.1   0.00018      0.06     112     285 ..     138     317 ..     122     323 .. 0.63
   2 ?   -2.0   0.0      0.46   1.6e+02     500     559 ..     597     658 ..     551     707 .. 0.77

  Alignments for each domain:
  == domain 1    score: 9.3 bits;  conditional E-value: 0.00018
   TIGR01217 112 sakvtfeelrrqvaslaaalral.GvkkGdrvagylpnipeavaallatasvGaiwsscspdfGargvldrfsqiepkllfsvdgyvynGkehdrrekvrevakelpdlravvli..pyvgdreklapkvegaltledllaa.....aqaaelvfeqlpfdhp.....lyilfssGttGvpkaivhs 285
                  + +t+ e r  +  l   + +   +k+Gd v+ y     + +   +a+ s   +  ++   +G++g+    +q + kl+++   +  +     ++   r+ + ++++ ++v+ i  p   +  k +  v +a  l +l+ +     + +  +    +p + p       ++++sGttG+pk ++ +
  MMETSP1137-20121227|7912_1 138 YTWMTYGEYRTALHALGGGMVKFaXLKPGDHVVIYAETQLDWMLSCIAAFSQSLVVVTVYATLGEEGLAHGVKQTKAKLIIADSKLLPK-----VSAAARKHKESMGNCNHVIAIsdPVQTPDPKNESVVSAA--LRELTESgwksqTLDEAIANAGIPPNPPkaedtAVVMYTSGTTGLPKGVIIT 317
                 55688999999998888877665168999999999999999999999999999999999999999999999999999998875544322.....222333334455555555555323333333333333332..33444332222222333333344444332222268************98754 PP

  == domain 2    score: -2.0 bits;  conditional E-value: 0.46
   TIGR01217 500 vwah.GdyieltprGgivihGrs.datlnpnGvrlGsaeiynaverldeveeslvigqeqed 559
                  w h Gd  ++tp G + i  r  d    ++G  +  +++ na+++ + ve  ++ ++  e 
  MMETSP1137-20121227|7912_1 597 RWFHtGDIGQFTPDGNLQIIDRKkDLVKLQQGEYVALSKVENALKACPLVEMPMCYARSSES 658
                 38776999999**9999888775155566889999999999999999999988888776665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (757 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       115  (0.0280351); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                        21  (0.00511945); expected 4.1 (0.001)
Passed Fwd filter:                        12  (0.0029254); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.82u 0.16s 00:00:00.98 Elapsed: 00:00:00.75
# Mc/sec: 1332.21
//
Query:       MMETSP1137-20121227|7915_1  [L=204]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (204 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        62  (0.0151146); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.16s 00:00:00.35 Elapsed: 00:00:00.55
# Mc/sec: 489.56
//
Query:       MMETSP1137-20121227|7916_1  [L=328]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.9e-05   22.5   0.0    2.7e-05   22.0   0.0    1.2  1  TIGR01488 HAD-SF-IB: HAD phosphoserine phosphatase-like hydrolase, family IB
     0.0067   14.4   0.0       0.01   13.7   0.0    1.2  1  TIGR01489 DKMTPPase-SF: 2,3-diketo-5-methylthio-1-phosphopentane phosphatase


Domain annotation for each model (and alignments):
>> TIGR01488  HAD-SF-IB: HAD phosphoserine phosphatase-like hydrolase, family IB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.0   0.0   1.3e-08   2.7e-05       1     150 [.      79     234 ..      79     248 .. 0.75

  Alignments for each domain:
  == domain 1    score: 22.0 bits;  conditional E-value: 1.3e-08
   TIGR01488   1 laifDfDgTLtdqdsliellkkllgtndevkeltrlvlegrisfedrlgrrlkllerslleelak..eflakevairpgarelikwlkekGiklvivSg...gldflveklaeklgidk.vfanelelddnGlltgrieg.e...vnpsgeeKgkvlkel 150
                 la+fD+DgTL  ++    ++++ ++    + ++  l+     ++ + l++  ++ +  + ++ ++  + +    +i+p a+++  ++  ++++++i+S+   ++d+l ++l  klg+++ + a   ++  ++ ++ + +  +   ++ + ++K ++lk+l
  MMETSP1137-20121227|7916_1  79 LAVFDVDGTLLVTQGREIIVDSNGM----RAAVHPLMEPVATPVTSSLMYTSDYTHAGEEDQXEDtfQLIMNACIIEPIAEKCRTFAEHEDCDVAIISArghNPDWLARQLEMKLGLKRpLAAENVKCVYSDAFEQQFKAaKaegEDGTSDRKALALKQL 234
                 79*************8888886666....456667777788888888888888888887555555556777777788*********************988889*************9984444444444445655555533555667777777777754 PP

>> TIGR01489  DKMTPPase-SF: 2,3-diketo-5-methylthio-1-phosphopentane phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   0.0   5.1e-06      0.01       3      96 ..      79     173 ..      77     178 .. 0.79

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 5.1e-06
   TIGR01489   3 vvvsDFDgTIieqdsddwivdkfgkkeakrllkeslskdlsiefmdrlmkvLsseglkedeikevlksvpidegvkefie.fikekeidliviSd 96 
                 + v+D DgT+      ++ivd  g+  a + l e        ++m    ++   e  + +++ + + ++ i e + e    f++++++d+ +iS+
  MMETSP1137-20121227|7916_1  79 LAVFDVDGTLLVTQGREIIVDSNGMRAAVHPLMEPVATPVTSSLMYTSDYTHAGEEDQXEDTFQLIMNACIIEPIAEKCRtFAEHEDCDVAIISA 173
                 679***********************9999998888877777777777777777777777888888887766666666550555566*******7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (328 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       112  (0.0273038); expected 82.0 (0.02)
Passed bias filter:                      105  (0.0255973); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.26u 0.17s 00:00:00.43 Elapsed: 00:00:00.40
# Mc/sec: 1082.31
//
Query:       MMETSP1137-20121227|7917_1  [L=93]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (93 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        30  (0.00731351); expected 82.0 (0.02)
Passed bias filter:                       29  (0.00706972); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.14s 00:00:00.28 Elapsed: 00:00:00.27
# Mc/sec: 454.63
//
Query:       MMETSP1137-20121227|7918_1  [L=796]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0078   11.9   0.0      0.013   11.2   0.0    1.2  1  TIGR01739 tegu_FGAM_synt: herpesvirus tegument protein/v-FGAM-synthase


Domain annotation for each model (and alignments):
>> TIGR01739  tegu_FGAM_synt: herpesvirus tegument protein/v-FGAM-synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.2   0.0   3.2e-06     0.013     749     784 ..     120     155 ..     109     158 .. 0.88

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 3.2e-06
   TIGR01739 749 lselspeslkkllkalqelvkegvivSgHDvSDGGL 784
                 + +l+ e+ +k+l++++e  k+g+  SgHD SDGGL
  MMETSP1137-20121227|7918_1 120 VRTLKREKTRKILAVVEEGGKNGLPSSGHDSSDGGL 155
                 467889999**************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (796 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       184  (0.0448562); expected 82.0 (0.02)
Passed bias filter:                      114  (0.0277913); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.56u 0.14s 00:00:00.70 Elapsed: 00:00:00.72
# Mc/sec: 1459.21
//
Query:       MMETSP1137-20121227|7919_1  [L=549]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.3e-07   27.1   0.0    8.6e-07   26.4   0.0    1.2  1  TIGR00569 ccl1: cyclin ccl1


Domain annotation for each model (and alignments):
>> TIGR00569  ccl1: cyclin ccl1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.4   0.0   2.1e-10   8.6e-07      68     220 ..     168     315 ..     161     339 .. 0.85

  Alignments for each domain:
  == domain 1    score: 26.4 bits;  conditional E-value: 2.1e-10
   TIGR00569  68 salkptlPkevvgtAilyFkRFyLnnsvmeydPkiivltcvFlAcKveefnv.sieqFvkn..lketrekaleevLeyEllliqsLkfsLlvhnPyrPleGFllDiktvlpkleneevlrkiadkflnevlltDvvllytPsqiaLaailseasrl 220
                 + ++  lP++ vg A++yF R+  +    e d   i l c+F A+K     +   +q ++   ++++r  a+ ++   E+ +++ L+++L    P+  le     ++  l      e+ ++ a++f++  ++ + + + +P  +a aa+l + +++
  MMETSP1137-20121227|7919_1 168 EDFR--LPTHAVGLAVSYFDRYMFHCQHNELDFELIALACIFTASKFVLMGMpPADQLCHAryARQSRPYAPSQLYAAEVCVLEALEWELHTATPHSGLELL-ALLQGGL-----SERCHERAQDFISISYYMESCAVVSPLLVAAAALLCSLQQV 315
                 5677..****************************************8777662578988652267778899**************************99943.3355555.....6778888999***********************99876554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (549 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        59  (0.0143832); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.15s 00:00:00.48 Elapsed: 00:00:00.48
# Mc/sec: 1509.63
//
Query:       MMETSP1137-20121227|7920_1  [L=141]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.2e-48  160.7   0.5    3.7e-48  160.5   0.3    1.0  1  TIGR03673 rpl14p_arch: 50S ribosomal protein L14P
    1.1e-18   65.1   0.4    1.3e-18   64.9   0.3    1.1  1  TIGR01067 rplN_bact: ribosomal protein L14


Domain annotation for each model (and alignments):
>> TIGR03673  rpl14p_arch: 50S ribosomal protein L14P
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  160.5   0.3   1.8e-51   3.7e-48       3     130 ..      12     140 ..      10     141 .] 0.96

  Alignments for each domain:
  == domain 1    score: 160.5 bits;  conditional E-value: 1.8e-51
   TIGR03673   3 irakvtralevgalvkvaDnsGaklvevisvkkykgvkrrlpaagvgDlvvvsvkkGtpelrkqvlkavvvrqrkeyrrpdG.trvkfeDnavvivteegepkGseikgpvareaaerfpkiasiasii 130
                  ++++t +l vg+ +++aDn+Gak + +isvk+ kg+ +++p a+vg++v+++vkkG+pelrk+v+ avvvrqr+ +rr dG   v feDna viv+ +g  kGs i gpva+e a+ +p+ias+a ++
  MMETSP1137-20121227|7920_1  12 NKFRTTLGLCVGSVMNCADNTGAKNLYIISVKGIKGRLNKMPGATVGNMVMATVKKGKPELRKKVMPAVVVRQRRTWRRVDGgGFVYFEDNAGVIVNVKGXLKGSAISGPVAKECADLWPRIASAAGTV 140
                 5678899**************************************************************************7368****************************************9876 PP

>> TIGR01067  rplN_bact: ribosomal protein L14
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.9   0.3   6.2e-22   1.3e-18       5     120 ..      23     139 ..      20     141 .] 0.83

  Alignments for each domain:
  == domain 1    score: 64.9 bits;  conditional E-value: 6.2e-22
   TIGR01067   5 ksrlkvaDnsGakkvecikvlg..gskkry..akvGdvivvvvkkaipkkkvkkgdvvkavivrtkkevrRkdG.stvkfddnacvllnkkkePlGtRifgpvarelrekgflkivslake 120
                  s+++ aDn+Gak++ +i v g  g  +++  a+vG++++++vkk +p+ +    +v+ av+vr ++  rR dG   v f+dna v++n k+  +G  i gpva+e  +  + +i+s a  
  MMETSP1137-20121227|7920_1  23 GSVMNCADNTGAKNLYIISVKGikGRLNKMpgATVGNMVMATVKKGKPELR---KKVMPAVVVRQRRTWRRVDGgGFVYFEDNAGVIVNVKGXLKGSAISGPVAKECAD-LWPRIASAAGT 139
                 6899**************9987433333323499**************974...56****************97368*****************************865.46666666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (141 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        91  (0.0221843); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.16u 0.15s 00:00:00.31 Elapsed: 00:00:00.37
# Mc/sec: 502.99
//
Query:       MMETSP1137-20121227|7921_1  [L=147]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (147 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        75  (0.0182838); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.14s 00:00:00.29 Elapsed: 00:00:00.44
# Mc/sec: 440.96
//
Query:       MMETSP1137-20121227|7922_1  [L=467]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (467 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        40  (0.00975134); expected 82.0 (0.02)
Passed bias filter:                       34  (0.00828864); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.11s 00:00:00.41 Elapsed: 00:00:00.43
# Mc/sec: 1433.46
//
Query:       MMETSP1137-20121227|7923_1  [L=611]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   7.2e-103  342.6   0.0   2.4e-102  340.9   0.0    1.7  1  TIGR01263 4HPPD: 4-hydroxyphenylpyruvate dioxygenase
    2.6e-08   32.3   0.2    1.7e-07   29.7   0.0    2.3  3  TIGR03081 metmalonyl_epim: methylmalonyl-CoA epimerase


Domain annotation for each model (and alignments):
>> TIGR01263  4HPPD: 4-hydroxyphenylpyruvate dioxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  340.9   0.0  1.1e-105  2.4e-102       1     351 [.     117     530 ..     117     532 .. 0.95

  Alignments for each domain:
  == domain 1    score: 340.9 bits;  conditional E-value: 1.1e-105
   TIGR01263   1 kgfdfvefavgdakqaakalveklGfeavak...etgsrekastvlrqgeitlvltaelsss...................................seaaaflakHGdgvkdvafevedveaafeaavergaeavsapeeedekevklaaikgiGdvvltlvereg...ekgsilpgfeevsekaalkekledvgleaiDHvvgnvergelekvaefyekilgfkeiksfd...ikteasaLkSkvlasaegkvklplnepask.kkksQIeeyleeyeGaGvQHlAlntedivktveelrar.....gveflkip.etYYdnlkervkk..lvkedleelkelkiLvDrdeeGlLLQiFtkpvvdrgtlFfEiIqRk................gakGFGegNfkaLfeaiEreqekrg 351
                 k+f++vef++gdak+ a++++ +lG++ va+    tg+++ as+v+ +g++++vlta++sss                                   +e++af akHG ++++v+++ved++ a+e+av++ga + ++p+++ +++  + ++  +Gd+vl++v+ e     ++++lpg+++   ++++       g+e+iDH+vgnv+  +le++ ++ e + gf+e+++f+   + t  s+L+S+vlas++++v lplnep+++ k+ksQI +yle+++G+GvQH+Al+t+di+ t++++r+      g+e++++p  +YY +l++r+++  l++e+   ++ l+iL+D de+G+LLQiFtkpv dr tlFfEiIqR                 g+ GFG+gNf++Lf aiE+++++ g
  MMETSP1137-20121227|7923_1 117 KDFHHVEFICGDAKSLAAHWCLALGMQPVAHsnlMTGNKHYASHVISSGSVRFVLTAPYSSSasakasegthapsadgkhaesewepstlpnpshsaDEMHAFFAKHGVSACAVGVHVEDAAVAYEQAVAAGAVSRTSPRSSPDGDCVVSEVLLYGDTVLRFVSGEAveeSSSHFLPGYVASLPRSSA----RTFGIERIDHLVGNVP--KLEQTRQYLETLSGFHEFAEFTaddVGTVDSGLNSVVLASNNENVLLPLNEPTHGsKRKSQILTYLEQHNGPGVQHIALKTDDIFGTIRAIREMhaqggGLELMDPPrPQYYATLRDRLGHdvLSAEQASACEXLGILADADEQGVLLQIFTKPVGDRSTLFFEIIQRVgctidpetgaetaqrpGCGGFGKGNFRELFRAIEEYETRAG 530
                 58*****************************9999*************************************************************99*************************************999998779*******************865422267889****988876433....569*************..7********************9999****************************999****************************9999988887788999*****66379***********9999*********************************************************************************9987 PP

>> TIGR03081  metmalonyl_epim: methylmalonyl-CoA epimerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0      0.26   5.3e+02       2      32 ..     119     150 ..     118     181 .. 0.73
   2 ?   -4.0   0.0         2   4.1e+03      24      36 ..     231     243 ..     217     254 .. 0.56
   3 !   29.7   0.0   8.2e-11   1.7e-07       1      95 [.     311     415 ..     311     426 .. 0.80

  Alignments for each domain:
  == domain 1    score: -1.0 bits;  conditional E-value: 0.26
   TIGR03081   2 ldhvaiavkdleeaaklyrdvlGak.vseeee 32 
                 + hv   + d++++a+ +  +lG++ v++++ 
  MMETSP1137-20121227|7923_1 119 FHHVEFICGDAKSLAAHWCLALGMQpVAHSNL 150
                 5799999************9***973444444 PP

  == domain 2    score: -4.0 bits;  conditional E-value: 2
   TIGR03081  24 Gakvseeeelpeq 36 
                 G++v+++    eq
  MMETSP1137-20121227|7923_1 231 GVHVEDAAVAYEQ 243
                 3333333333333 PP

  == domain 3    score: 29.7 bits;  conditional E-value: 8.2e-11
   TIGR03081   1 kldhvaiavkdleeaaklyrdvlGa.....kvseeeelpeqgvkvvflelgetkl..ellepl...eedspiakflekkkgeGlhhialevddieaaletlkekg 95 
                 ++dh+   v++le+  ++ + + G+       ++     + g++ v+l+ ++ ++   l ep+   +++s i  +le+++g G+ hial++ddi  +++ ++e  
  MMETSP1137-20121227|7923_1 311 RIDHLVGNVPKLEQTRQYLETLSGFhefaeFTADDVGTVDSGLNSVVLASNNENVllPLNEPThgsKRKSQILTYLEQHNGPGVQHIALKTDDIFGTIRAIREMH 415
                 69***************999999994444323556667799*******999766512455665222689*************************99988888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (611 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        87  (0.0212092); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.18s 00:00:00.63 Elapsed: 00:00:00.91
# Mc/sec: 886.21
//
Query:       MMETSP1137-20121227|7924_1  [L=557]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.051   10.7   3.7       0.08   10.1   2.5    1.2  1  TIGR00742 yjbN: tRNA dihydrouridine synthase A


Domain annotation for each model (and alignments):
>> TIGR00742  yjbN: tRNA dihydrouridine synthase A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   2.5   1.9e-05      0.08      82     140 ..     478     537 ..     455     552 .. 0.73

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 1.9e-05
   TIGR00742  82 deinlnvGcPsdrvqngnfGaclmanadlvadivkamkeaveiPvt.vktriGideldsy 140
                 +  n+n+Gc  d   n n   c m+n+d  a+i  +m++ +    + +  r G d +  y
  MMETSP1137-20121227|7924_1 478 NGCNMNIGCRMDNSCNMNNSCCNMSNSDAYANISTSMRQDMPGSFSaLYDRPGQDIQRVY 537
                 458**********************************98765444314555555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (557 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       115  (0.0280351); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.11s 00:00:00.49 Elapsed: 00:00:00.49
# Mc/sec: 1500.37
//
Query:       MMETSP1137-20121227|7925_1  [L=176]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (176 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        93  (0.0226719); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.15s 00:00:00.32 Elapsed: 00:00:00.36
# Mc/sec: 645.28
//
Query:       MMETSP1137-20121227|7926_1  [L=412]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (412 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       103  (0.0251097); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.15s 00:00:00.43 Elapsed: 00:00:00.55
# Mc/sec: 988.72
//
Query:       MMETSP1137-20121227|7927_1  [L=225]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0035   13.2   0.0     0.0042   13.0   0.0    1.1  1  TIGR00870 trp: transient-receptor-potential calcium channel protein


Domain annotation for each model (and alignments):
>> TIGR00870  trp: transient-receptor-potential calcium channel protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   0.0     1e-06    0.0042      37     159 ..      51     179 ..      17     198 .. 0.68

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 1e-06
   TIGR00870  37 leeaklveklnincvdrlgrsallsaaieneneelteLllkkeegevGdalLhaiskelvdaveailllllkaarksltlselandestseftkgitalilAihkqnyeivklLlekgasve.............a 159
                  e++    ++ ++ v +l+ ++ + aa+++e   + e+l+      +G +lL a ++   +   a+l+   + +++ +++         ++  +g ++l++A+    +++v+ Ll+ gas++             +
  MMETSP1137-20121227|7927_1  51 SEGSSGELSFTQEXVLSLNIERFFAAAKQGETAIISEMLETA----LGPTLLSAKLE---RSRTALLAASRFGHPGVVSVLLSHGVDVDEQNDAGVSPLMVAAAYGHLKCVRQLLKHGASLSlcdktgrsaldwaI 179
                 444555567778888888888889888888888888877654....58888887777...555556666666666655442222222233446799************************9865555555544444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (225 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        77  (0.0187713); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.22u 0.13s 00:00:00.35 Elapsed: 00:00:00.35
# Mc/sec: 848.50
//
Query:       MMETSP1137-20121227|7928_1  [L=364]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (364 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        90  (0.0219405); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.15s 00:00:00.42 Elapsed: 00:00:00.37
# Mc/sec: 1298.49
//
Query:       MMETSP1137-20121227|7929_1  [L=374]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.024   11.6   0.0      0.043   10.8   0.0    1.3  1  TIGR03087 stp1: sugar transferase, PEP-CTERM/EpsH1 system associated


Domain annotation for each model (and alignments):
>> TIGR03087  stp1: sugar transferase, PEP-CTERM/EpsH1 system associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   1.1e-05     0.043     295     356 ..     265     332 ..     249     350 .. 0.83

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 1.1e-05
   TIGR03087 295 lahaavvvaPlri.aRGvqnkvLEA....m.Amakpvvaspeaaegieaeaeaellvaaeeeefvaav 356
                 l +a++++ Pl i a G    vLEA    m A+a pvva+p   ++ +   + el  a+++++ v++ 
  MMETSP1137-20121227|7929_1 265 LEQADLLIIPLLIgAAGSRGTVLEAppldMqALASPVVATPLNTNAWQDVIGSELETALKQDDTVKSR 332
                 67899******996789*******97766358999************************999998764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (374 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       105  (0.0255973); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.27u 0.16s 00:00:00.43 Elapsed: 00:00:00.51
# Mc/sec: 967.92
//
Query:       MMETSP1137-20121227|7930_1  [L=192]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.1e-05   21.3   7.4    1.1e-05   21.2   5.2    1.0  1  TIGR02168 SMC_prok_B: chromosome segregation protein SMC
      7e-05   18.5   7.6    7.7e-05   18.4   5.3    1.0  1  TIGR02169 SMC_prok_A: chromosome segregation protein SMC
     0.0022   14.9   3.5     0.0026   14.7   2.4    1.1  1  TIGR00414 serS: serine--tRNA ligase
  ------ inclusion threshold ------
      0.011   12.5   9.2      0.014   12.2   6.4    1.0  1  TIGR01843 type_I_hlyD: type I secretion membrane fusion protein, HlyD family
      0.039   10.5   5.0      0.048   10.2   3.5    1.1  1  TIGR02231 TIGR02231: conserved hypothetical protein
       0.07   10.2   2.7      0.087    9.9   1.8    1.2  1  TIGR03752 conj_TIGR03752: integrating conjugative element protein, PFL_4705 family
      0.076    9.2   1.9      0.096    8.8   1.3    1.1  1  TIGR00811 sit: silicon transporter
       0.61    8.1   9.0        6.7    4.7   6.3    2.1  1  TIGR02894 DNA_bind_RsfA: transcription factor, RsfA family


Domain annotation for each model (and alignments):
>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   5.2   2.2e-08   1.1e-05     354     463 ..      45     154 ..       7     174 .. 0.72

  Alignments for each domain:
  == domain 1    score: 21.2 bits;  conditional E-value: 2.2e-08
   TIGR02168 354 esleaeleeaeaeleelesrleeleeeleelrsevaeleeqlaslnaelerleaeleqleerrerlkqeieelekkleeaeaelkelqeeleeleeeleeleeelerlee 463
                 + ++++ +++++  +el + +e+l+e+ ee+++ +a+ ee++a+++++l+ l ++l +l+++++r  ++++e +k ++e+ea+ +++ e+ ++l + l+    +l + ++
  MMETSP1137-20121227|7930_1  45 KHMAQAGSSLQNYNNELVRCIEDLREKREEVNRSIAKDEEEKAKIQNDLRILTERLAKLNDNLARKISSRNEYDKTIQETEAAYSKIMESSQTLLHVLKRESVNLTKKRQ 154
                 45556666666777788888888888888888888888888888888888888888888888888888888888888888887777776666655554443333333333 PP

>> TIGR02169  SMC_prok_A: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   5.3   1.5e-07   7.7e-05     255     355 ..      52     151 ..      19     173 .. 0.60

  Alignments for each domain:
  == domain 1    score: 18.4 bits;  conditional E-value: 1.5e-07
   TIGR02169 255 ekleeeieelekeleeiekkleelnkkieklgeeeqlavkekleelkaeiekleraiaekeeeledaeerlakaeaeidklkeeieelereieeekkerek 355
                   l++  +el + +e +++k+ee+n+ i k  eee+++++++l+ l+  ++kl++++a k +  ++ +++++++ea ++k+ e  + l + +++e ++ +k
  MMETSP1137-20121227|7930_1  52 SSLQNYNNELVRCIEDLREKREEVNRSIAK-DEEEKAKIQNDLRILTERLAKLNDNLARKISSRNEYDKTIQETEAAYSKIMESSQTLLHVLKRESVNLTK 151
                 333334444444455555555566666655.5666666666666666666666666666666666666666666666666666666665555555444333 PP

>> TIGR00414  serS: serine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   2.4     5e-06    0.0026      34     131 ..      53     156 ..      29     170 .. 0.79

  Alignments for each domain:
  == domain 1    score: 14.7 bits;  conditional E-value: 5e-06
   TIGR00414  34 elddklkkllskieelqkkrnelskeigkkkaekkdkiee....lkkelkelkeeleeleaelkeleeeleekllkipnlvaes...vpvgkdeednlevkkege 131
                 +l++  ++l   ie l++kr+e++++i+k+++ek++  ++    l+++l +l+ +l+++ ++ +e ++ ++e     + +++ s   + v k e+ nl  k+++ 
  MMETSP1137-20121227|7930_1  53 SLQNYNNELVRCIEDLREKREEVNRSIAKDEEEKAKI-QNdlriLTERLAKLNDNLARKISSRNEYDKTIQETEAAYSKIMESSqtlLHVLKRESVNLTKKRQTS 156
                 4555566777889****************88887764.444677999**********999999999999999999999997665222567788888887777665 PP

>> TIGR01843  type_I_hlyD: type I secretion membrane fusion protein, HlyD family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   6.4   2.6e-05     0.014      95     240 ..      18     161 ..       2     173 .. 0.76

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 2.6e-05
   TIGR01843  95 aevarlraeanseeaiefpdillsae.davaelvkeqeslfesrksalraqlesleaqikqleaeleglqaqlqalrqqleliseelealrkLkekglvsrlelLelereraelqgelae.leaeleklkaeldeleeklqeleqkfr 240
                 ++  r+ra   ++++i +    ++     + + ++++ s +++ +++l   +e l +++++ + ++++ +++ ++++++l+++ e+l  l+   ++++ sr+e+ +  +e +++ +++ e ++  l++lk+e  +l +k+q+    ++
  MMETSP1137-20121227|7930_1  18 NDRYRIRAA--AAALIRDT--RTRPGfSLQWKHMAQAGSSLQNYNNELVRCIEDLREKREEVNRSIAKDEEEKAKIQNDLRILTERLAKLNDNLARKISSRNEYDKTIQETEAAYSKIMEsSQTLLHVLKRESVNLTKKRQTSSYAAA 161
                 444444444..33333222..22222236788999999999************************************************999999*********999988877777765505666899*********99998766555 PP

>> TIGR02231  TIGR02231: conserved hypothetical protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   3.5   9.4e-05     0.048      88     181 ..      45     141 ..      32     155 .. 0.85

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 9.4e-05
   TIGR02231  88 edledradalkklk....kfledirekltepikdlkreeadlkelkklldfaeseieklleedreveakirelekklselenelralltekeqrskkv 181
                 +++++++++l++      + +ed+rek +e  + + ++e++ +++++ l    + ++kl+ ++  + +  +e +k ++e e+   ++++ ++q   +v
  MMETSP1137-20121227|7930_1  45 KHMAQAGSSLQNYNnelvRCIEDLREKREEVNRSIAKDEEEKAKIQNDLRILTERLAKLNDNLARKISSRNEYDKTIQETEAAYSKIME-SSQTLLHV 141
                 566777777777666677**********9999999999999999999999999999999999999999999999999999999999998.55555554 PP

>> TIGR03752  conj_TIGR03752: integrating conjugative element protein, PFL_4705 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   1.8   0.00017     0.087      62     137 ..      66     140 ..      34     180 .. 0.52

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 0.00017
   TIGR03752  62 rtlvaelkelrkelaklekeNeklkkenerlkkreesvderiqqaleaekkelkkekeqlkeeqakleelldelqk 137
                  +l  + +e+++++ak e+e  k++++ + l++r  ++++++++++++ ++e++k++++++++  k+ e++++l +
  MMETSP1137-20121227|7930_1  66 EDLREKREEVNRSIAKDEEEKAKIQNDLRILTERLAKLNDNLARKISS-RNEYDKTIQETEAAYSKIMESSQTLLH 140
                 222222233333333333333334444444555555555555555555.444555555555555555555554444 PP

>> TIGR00811  sit: silicon transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   1.3   0.00019     0.096     467     544 ..      44     123 ..      37     129 .. 0.76

  Alignments for each domain:
  == domain 1    score: 8.8 bits;  conditional E-value: 0.00019
   TIGR00811 467 weealanlsvketfsvrrerilknikelkelleeass..deekaafeaalalevkaldklneeeeeeadlkkevedveae 544
                 w+      s  + +   + r +++++e +e ++ +++  +eeka  ++ l++ ++ l+kln++  ++ + ++e +++ +e
  MMETSP1137-20121227|7930_1  44 WKHMAQAGSSLQNYNNELVRCIEDLREKREEVNRSIAkdEEEKAKIQNDLRILTERLAKLNDNLARKISSRNEYDKTIQE 123
                 5555555567788999999*************9985511567899999**************988866666665555443 PP

>> TIGR02894  DNA_bind_RsfA: transcription factor, RsfA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   6.3     0.013       6.7      83     149 ..      62     133 ..      12     155 .. 0.57

  Alignments for each domain:
  == domain 1    score: 4.7 bits;  conditional E-value: 0.013
   TIGR02894  83 edviefLqnlke.tleeaeklrkekeklkeeleslqkr....neeLekeleklkkkksvieedyetlikimd 149
                  ++ie L++ +e  + + +k ++ek k++++l+ l +r    n++L++++ + ++  ++i+e  ++  kim+
  MMETSP1137-20121227|7930_1  62 VRCIEDLREKREeVNRSIAKDEEEKAKIQNDLRILTERlaklNDNLARKISSRNEYDKTIQETEAAYSKIME 133
                 334444433332033344444445555555544433331111333344444444445555555555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (192 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       338  (0.0823988); expected 82.0 (0.02)
Passed bias filter:                      181  (0.0441248); expected 82.0 (0.02)
Passed Vit filter:                        28  (0.00682594); expected 4.1 (0.001)
Passed Fwd filter:                         8  (0.00195027); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.29u 0.15s 00:00:00.43 Elapsed: 00:00:00.44
# Mc/sec: 575.95
//
Query:       MMETSP1137-20121227|7931_1  [L=415]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (415 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.17s 00:00:00.46 Elapsed: 00:00:00.32
# Mc/sec: 1711.73
//
Query:       MMETSP1137-20121227|7932_1  [L=293]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0005   17.0   0.0    0.00091   16.2   0.0    1.4  1  TIGR04180 EDH_00030: NAD dependent epimerase/dehydratase, LLPSF_EDH_00030 family
      0.001   15.9   0.7     0.0024   14.6   0.5    1.5  1  TIGR03466 HpnA: hopanoid-associated sugar epimerase
  ------ inclusion threshold ------
      0.016   12.3   0.0      0.025   11.7   0.0    1.3  1  TIGR01486 HAD-SF-IIB-MPGP: mannosyl-3-phosphoglycerate phosphatase family


Domain annotation for each model (and alignments):
>> TIGR04180  EDH_00030: NAD dependent epimerase/dehydratase, LLPSF_EDH_00030 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0   6.6e-07   0.00091       2     120 ..      51     169 ..      50     176 .. 0.79

  Alignments for each domain:
  == domain 1    score: 16.2 bits;  conditional E-value: 6.6e-07
   TIGR04180   2 lvtGadGfiGshlvealvekGaevralvlynsf....nswGwldevekevkkeievvlGdirdaesvkkavkgvdvvfhlaaliaiPysyvapesyvetn.vkGtlnvlqaardlevekv.vhts 120
                  v Ga G  Gs  v + + +G +v  lv+  s+    +  G   + ++ ++++++vv+Gd+ +a+ v k+ +g d+   + al +   s v      et    Gt nv++a++ ++v+++ v ts
  MMETSP1137-20121227|7932_1  51 AVFGASGGTGSEAVFQALGRGEDVSCLVRDPSRllvpEGSGGSSANTPLTSEKLKVVQGDVTKASDVAKVFEGGDITGVVVALGGK-TSDVG-----ETMlTDGTRNVIEACKANGVKRIaVVTS 169
                 588*************************99997333334566667777899**********************9998877777553.23332.....333146****************834455 PP

>> TIGR03466  HpnA: hopanoid-associated sugar epimerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.5   1.7e-06    0.0024       5     115 ..      52     171 ..      48     179 .. 0.76

  Alignments for each domain:
  == domain 1    score: 14.6 bits;  conditional E-value: 1.7e-06
   TIGR03466   5 vtGatGFvGsavvrllleeGeevrvlvrktsd............rrnleeldvEiveGdlkdeaslkkalkGcealfHvAAdyrlwakdpeelykanvegtravleaAleagvervvytssva 115
                 v Ga+G  Gs+ v + l +Ge+v +lvr+ s+            ++ l++ +  +v+Gd++ ++ ++k  +G ++   v A   l  k+++   ++  +gtr+v+ea + +gv+r+    s++
  MMETSP1137-20121227|7932_1  52 VFGASGGTGSEAVFQALGRGEDVSCLVRDPSRllvpegsggssaNTPLTSEKLKVVQGDVTKASDVAKVFEGGDITGVVVA---LGGKTSDVGETMLTDGTRNVIEACKANGVKRIAVVTSIG 171
                 78**************************987522222222211134466667789******************99888877...444555555555679****************97666654 PP

>> TIGR01486  HAD-SF-IIB-MPGP: mannosyl-3-phosphoglycerate phosphatase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   1.8e-05     0.025     190     232 ..     161     208 ..     126     227 .. 0.78

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 1.8e-05
   TIGR01486 190 kekekaikvvglGDspnDlp.....llevvdlavvvkgkdgeskslke 232
                  ++   ++++g+GDs n +p     l+ +v+ ++ v+++++e+ +l+ 
  MMETSP1137-20121227|7932_1 161 VKRIAVVTSIGAGDSENQAPfffkmLMMTVMRKIFVDKNNQEKLFLDG 208
                 4555667899**********555544578999*****99999888875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (293 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       135  (0.0329108); expected 82.0 (0.02)
Passed bias filter:                      100  (0.0243784); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.29u 0.19s 00:00:00.48 Elapsed: 00:00:00.39
# Mc/sec: 991.61
//
Query:       MMETSP1137-20121227|7933_1  [L=444]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (444 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       230  (0.0560702); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.14s 00:00:00.45 Elapsed: 00:00:00.45
# Mc/sec: 1302.29
//
Query:       MMETSP1137-20121227|7934_1  [L=185]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.2e-37  123.4  15.9    6.9e-35  117.4   8.6    2.1  2  TIGR01100 V_ATP_synt_C: V-type ATPase, C subunit
  ------ inclusion threshold ------
        4.1    5.4  11.3       0.06   11.3   1.2    2.8  2  TIGR01260 ATP_synt_c: ATP synthase F0, C subunit


Domain annotation for each model (and alignments):
>> TIGR01100  V_ATP_synt_C: V-type ATPase, C subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  117.4   8.6   3.4e-38   6.9e-35       1     108 []      14     127 ..      14     127 .. 0.93
   2 !    7.7   0.0   0.00041      0.85      44      66 ..     141     163 ..     129     180 .. 0.77

  Alignments for each domain:
  == domain 1    score: 117.4 bits;  conditional E-value: 3.4e-38
   TIGR01100   1 ffgvlGaaaalvfsalGaayGtaksgvGiaalgvl.....rpelilksiipvvmaGiiaiyGlvvavliagslkekek.yslykgfihlgaGlavGlsglaaGlaiGivGdagv 108
                 ffg++Gaa alvf ++GaayGt ks+vG+a+++ l     ++e+++ksi+pv+++G+ +i+Gl++av+i++s++  ++ ysl++g++hlgaGl+vGls la+Gla+G++G+ gv
  MMETSP1137-20121227|7934_1  14 FFGFMGAALALVFGNMGAAYGTWKSAVGLATIANLpsknvQTEMVMKSIMPVILSGVCGIFGLIIAVIISSSMEGGANkYSLFSGYAHLGAGLTVGLSNLATGLALGMAGEIGV 127
                 9****************************9997542222289********************************98777*******************************9987 PP

  == domain 2    score: 7.7 bits;  conditional E-value: 0.00041
   TIGR01100  44 iipvvmaGiiaiyGlvvavliag 66 
                 ++   +   +++yGl+va++ia 
  MMETSP1137-20121227|7934_1 141 VLIWSFGSALGLYGLIVALIIAV 163
                 5555566789**********985 PP

>> TIGR01260  ATP_synt_c: ATP synthase F0, C subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   1.6      0.42   8.6e+02      40      54 ..      67      81 ..      28      85 .. 0.54
   2 ?   11.3   1.2   2.9e-05      0.06       5      55 ..     115     161 ..     111     163 .. 0.85

  Alignments for each domain:
  == domain 1    score: -2.0 bits;  conditional E-value: 0.42
   TIGR01260 40 lvdaipiiavviaLl 54
                l    +i+++ ia +
  MMETSP1137-20121227|7934_1 67 LSGVCGIFGLIIAVI 81
                222345666666655 PP

  == domain 2    score: 11.3 bits;  conditional E-value: 2.9e-05
   TIGR01260   5 aaiGigilggKflEsaARQPelagllrtkmfivaglvdaipiiavviaLll 55 
                 +++  g++g   +  +ARQP     l   m+++ +   a +++++ +aL++
  MMETSP1137-20121227|7934_1 115 TGLALGMAGEIGVQDSARQPK----LYIGMVLIWSFGSALGLYGLIVALII 161
                 566677777888999****96....6789********************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (185 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       160  (0.0390054); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.20u 0.14s 00:00:00.34 Elapsed: 00:00:00.31
# Mc/sec: 787.68
//
Query:       MMETSP1137-20121227|7936_1  [L=840]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0011   16.4   0.0     0.0022   15.4   0.0    1.5  1  TIGR00633 xth: exodeoxyribonuclease III (xth)


Domain annotation for each model (and alignments):
>> TIGR00633  xth: exodeoxyribonuclease III (xth)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   5.2e-07    0.0022      20     113 ..     732     836 ..     725     840 .] 0.73

  Alignments for each domain:
  == domain 1    score: 15.4 bits;  conditional E-value: 5.2e-07
   TIGR00633  20 lellkeekpDvlclQEtKvaeeqlpkell.....eeegYevafssakkk.gysGvallskeepesvrvgigaeeedeegr.....vitaefdeltvvnvYvPnge 113
                 ++ +++ k Dv++lQE  v+++++   +       + gY+ +   + +  +  G+a+l  +++ +  +     +++ +g       +  +++++ ++++Y P  +
  MMETSP1137-20121227|7936_1 732 MAAMRNDKIDVVALQEHNVHRQNQRMIEShkhaaSTLGYKLFLAPTATAsQVGGTAILIAQTLLNEGTTASLAHSHPKGNsirvnLVIPSVGNFNIWSIYAPADS 836
                 6788999************985443222223344889****999877655999******99998766655555555555545566666789**********9765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (840 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       102  (0.0248659); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.17s 00:00:00.69 Elapsed: 00:00:00.83
# Mc/sec: 1335.79
//
Query:       MMETSP1137-20121227|7937_1  [L=517]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.3e-96  320.1   0.0    6.7e-96  319.8   0.0    1.0  1  TIGR00032 argG: argininosuccinate synthase
    8.1e-05   20.1   0.0    0.00015   19.2   0.0    1.3  1  TIGR00364 TIGR00364: queuosine biosynthesis protein QueC
    0.00066   17.2   0.1     0.0011   16.5   0.0    1.2  1  TIGR00268 TIGR00268: TIGR00268 family protein
     0.0016   15.3   0.0     0.0022   14.8   0.0    1.1  1  TIGR01536 asn_synth_AEB: asparagine synthase (glutamine-hydrolyzing)
  ------ inclusion threshold ------
      0.036   10.5   0.0      0.063    9.7   0.0    1.3  1  TIGR01862 N2-ase-Ialpha: nitrogenase component I, alpha chain


Domain annotation for each model (and alignments):
>> TIGR00032  argG: argininosuccinate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  319.8   0.0   8.2e-99   6.7e-96       1     388 [.      12     403 ..      12     407 .. 0.97

  Alignments for each domain:
  == domain 1    score: 319.8 bits;  conditional E-value: 8.2e-99
   TIGR00032   1 kvvlaysGGlDtsvalklleekgaeviavtvdvGqp.eedldaieekalklGaekayviDareefvkdylfaaiqanavyegkYllstaLaRpliakklvevakkegaeavahGctgKGnDqvRFelsilllnpdlkviaPvreleli.....ReeeieyaaekGievpvekekaysiDenllgrsiEageLEdp.steppediyelvkdpiektedepevveieFekGvPvalngeslepvelilkaneiagkhGvGriDivEdRiiglKsReiYEapalllLikAhkdLetlvltkdvlefkeiveekyseliYkGlwfdplaealdalikktqervtGtvrvklfkGnaivigrk.seyslYdeelvsfekdkefdqkdaiGfikirglqikv 388
                 kv++  sGGlD   + k l e+g+ev+a+ +d+Gqp e d+++++ +   +G++ ++++D ++ +++   f  iqa+a y+g Y ++t ++R ++ + l+ ++ ++ +e+++hG+tg+GnDq+RFe++  +l+p + v+aP+r+  l      R+e+  y+ + Gie  v  +k+ys+D nl+g s+Ea++LE + + + ++++ ++v  p +++ d++e+v+++F +G   a+ng+s++p+e+i +an+i+g++G+G +  +E+Riig KsR++YEap++ lL kA + + + vl+++ + +    ++ +s  +Y G+wfdp + a + +ik+  +  + tv+v  +kGn++ +  +  + s+Y+e  +s+e  + +++   +Gf +i+++++k 
  MMETSP1137-20121227|7937_1  12 KVGVCVSGGLDSKTVSKRLVEEGVEVLAFSADLGQPdESDIENVKARMATCGVD-TVIVDLKDAMAEG-CFEIIQAQARYDGGYWNTTGIGRIVTCHGLITAMLEKKVEVLSHGATGRGNDQMRFERYTNVLAPSMLVYAPWRDPVLLeefpgRSEMATYLGKFGIEAFVGPKKKYSTDANLAGLSHEAEDLESMeTPMTIVEAEMGVW-PADAP-DKTEEVTLTFVQGRCTAVNGKSMTPLEVITEANKIGGRNGLGISHALENRIIGTKSRGVYEAPGMELLGKALEFVYQSVLDRRATTLFWQLSKLVSDQVYDGRWFDPATRAARLAIKELTKTASATVKVGAYKGNVFFLSLTaAPASIYNEADSSMEASDGLNPVSSQGFAEIQAVEAKS 403
                 7999********************************999*********999875.789********99.****************************************************************************99999********************************************956677888877776.66666.9****************************************************************************************************************************************999998*********************************9986 PP

>> TIGR00364  TIGR00364: queuosine biosynthesis protein QueC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   0.0   1.9e-07   0.00015       3      60 ..      15      72 ..      14      87 .. 0.93

  Alignments for each domain:
  == domain 1    score: 19.2 bits;  conditional E-value: 1.9e-07
   TIGR00364  3 vvlSGGlDSttvllialkegeeveavtFdYgqrhskElevAkkiaealgiketvidls 60
                v +SGGlDS tv   +++eg ev a + d gq  + ++e  k    + g+ + ++dl+
  MMETSP1137-20121227|7937_1 15 VCVSGGLDSKTVSKRLVEEGVEVLAFSADLGQPDESDIENVKARMATCGVDTVIVDLK 72
                568****************************************9***********996 PP

>> TIGR00268  TIGR00268: TIGR00268 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0   1.3e-06    0.0011      13      74 ..      11      72 ..       4      82 .. 0.88

  Alignments for each domain:
  == domain 1    score: 16.5 bits;  conditional E-value: 1.3e-06
   TIGR00268 13 kkvliaysGGvdssllaavlsdaglevlaitvvspslspreledakkiakeigvkhelvkid 74
                kkv +  sGG+ds ++++ l + g+evla  +   +  + ++e+ k++    gv   +v++ 
  MMETSP1137-20121227|7937_1 11 KKVGVCVSGGLDSKTVSKRLVEEGVEVLAFSADLGQPDESDIENVKARMATCGVDTVIVDLK 72
                5888999*************999**********999999**************999998864 PP

>> TIGR01536  asn_synth_AEB: asparagine synthase (glutamine-hydrolyzing)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   2.7e-06    0.0022     253     313 ..      11      67 ..       3     134 .. 0.70

  Alignments for each domain:
  == domain 1    score: 14.8 bits;  conditional E-value: 2.7e-06
   TIGR01536 253 vpvgvllSGGlDSslvaaiakkeaksevktFsigfedskdldeskaarkvadelgtehkev 313
                 ++vgv++SGGlDS +v+  + +e   ev  Fs ++ + ++ d +++ +++a  +g++   v
  MMETSP1137-20121227|7937_1  11 KKVGVCVSGGLDSKTVSKRLVEEGV-EVLAFSADLGQPDESDIENVKARMA-TCGVDT--V 67 
                 68**************987777744.7*******99444443223333332.344443..3 PP

>> TIGR01862  N2-ase-Ialpha: nitrogenase component I, alpha chain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.0   7.7e-05     0.063     315     375 ..       7      72 ..       4      90 .. 0.71

  Alignments for each domain:
  == domain 1    score: 9.7 bits;  conditional E-value: 7.7e-05
   TIGR01862 315 kLqGkkvlly.vGGsrlwhliksleeelGvevvavsiefahed..dyekvikrvke...gtlliddv 375
                  L+Gkkv +  +GG  ++++ k l ee Gvev+a s  ++  d  d+e+v++r+      t+++d  
  MMETSP1137-20121227|7937_1   7 SLKGKKVGVCvSGGLDSKTVSKRLVEE-GVEVLAFSADLGQPDesDIENVKARMATcgvDTVIVDLK 72 
                 599***9775279999***99977766.**********99755227888887775411157777743 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (517 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       140  (0.0341297); expected 82.0 (0.02)
Passed bias filter:                      120  (0.029254); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.40u 0.13s 00:00:00.53 Elapsed: 00:00:00.54
# Mc/sec: 1263.67
//
Query:       MMETSP1137-20121227|7938_1  [L=301]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (301 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.13s 00:00:00.36 Elapsed: 00:00:00.37
# Mc/sec: 1073.75
//
Query:       MMETSP1137-20121227|7939_1  [L=258]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (258 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       109  (0.0265724); expected 82.0 (0.02)
Passed bias filter:                      105  (0.0255973); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.14s 00:00:00.38 Elapsed: 00:00:00.34
# Mc/sec: 1001.56
//
Query:       MMETSP1137-20121227|7940_1  [L=110]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (110 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        51  (0.012433); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.15s 00:00:00.30 Elapsed: 00:00:00.28
# Mc/sec: 518.53
//
Query:       MMETSP1137-20121227|7941_1  [L=217]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (217 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        69  (0.0168211); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.14s 00:00:00.34 Elapsed: 00:00:01.13
# Mc/sec: 251.24
//
Query:       MMETSP1137-20121227|7942_1  [L=222]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (222 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       172  (0.0419308); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.16s 00:00:00.39 Elapsed: 00:00:00.43
# Mc/sec: 681.43
//
Query:       MMETSP1137-20121227|7943_1  [L=513]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (513 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        86  (0.0209654); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.17s 00:00:00.51 Elapsed: 00:00:00.72
# Mc/sec: 940.42
//
Query:       MMETSP1137-20121227|7944_1  [L=144]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (144 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        55  (0.0134081); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.14s 00:00:00.30 Elapsed: 00:00:00.68
# Mc/sec: 279.51
//
Query:       MMETSP1137-20121227|7945_1  [L=170]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.6e-42  140.7   0.0    7.5e-42  140.5   0.0    1.1  1  TIGR02540 gpx7: putative glutathione peroxidase Gpx7


Domain annotation for each model (and alignments):
>> TIGR02540  gpx7: putative glutathione peroxidase Gpx7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  140.5   0.0   1.8e-45   7.5e-42       3     152 ..      13     168 ..      11     169 .. 0.89

  Alignments for each domain:
  == domain 1    score: 140.5 bits;  conditional E-value: 1.8e-45
   TIGR02540   3 ysfevkdikgrl.vslekyrgkvslvvnvaseceftdknyralqelqrelgpshfnvlafpcnqfgesepksskeiesfarknygvtfpifskikilgseaepafrflvdsskk......eprwnfwkylvdpegkvvkawkpeesveeirpeitsl 152
                 y+  ++d+  ++ v l+ky+gkvslvvnva +  +td+ny++lq lq +l p+ f+vlafpcnqfg +ep+   +i sf+   ygvtfp+f ki + g++++p ++fl +  +       + +wnf k+lv  +g v + + p+ s ++i ++i +l
  MMETSP1137-20121227|7945_1  13 YALSAHDLDSNApVNLDKYNGKVSLVVNVAXQGAMTDSNYKQLQALQEKLEPQGFTVLAFPCNQFGGQEPGDAAKIRSFVD-GYGVTFPMFAKIDVNGPNTHPVYKFLKKEKREfmgltsDIKWNFAKFLVRRDGSVANRYLPTTSPSSIEKDILAL 168
                 555566665543399****************************************************************95.8*************************987654222222679****************************999765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (170 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        72  (0.0175524); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.17u 0.13s 00:00:00.30 Elapsed: 00:00:00.62
# Mc/sec: 361.91
//
Query:       MMETSP1137-20121227|7946_1  [L=128]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (128 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       107  (0.0260848); expected 82.0 (0.02)
Passed bias filter:                       96  (0.0234032); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.16s 00:00:00.31 Elapsed: 00:00:00.48
# Mc/sec: 351.97
//
Query:       MMETSP1137-20121227|7947_1  [L=335]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (335 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       171  (0.041687); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                        19  (0.00463189); expected 4.1 (0.001)
Passed Fwd filter:                         8  (0.00195027); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.12s 00:00:00.52 Elapsed: 00:00:00.56
# Mc/sec: 775.73
//
Query:       MMETSP1137-20121227|7948_1  [L=185]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (185 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       112  (0.0273038); expected 82.0 (0.02)
Passed bias filter:                       97  (0.023647); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.14s 00:00:00.34 Elapsed: 00:00:00.33
# Mc/sec: 739.94
//
Query:       MMETSP1137-20121227|7949_1  [L=537]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   3.1e-180  596.9   0.0   3.8e-180  596.6   0.0    1.0  1  TIGR01962 NuoD: NADH dehydrogenase (quinone), D subunit
    0.00012   19.0   0.0    0.00025   17.9   0.0    1.4  1  TIGR03295 frhA: coenzyme F420 hydrogenase, subunit alpha


Domain annotation for each model (and alignments):
>> TIGR01962  NuoD: NADH dehydrogenase (quinone), D subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  596.6   0.0  1.8e-183  3.8e-180       2     385 ..      58     441 ..      57     442 .. 1.00

  Alignments for each domain:
  == domain 1    score: 596.6 bits;  conditional E-value: 1.8e-183
   TIGR01962   2 klvlnlGPqhPsahGvlrlileldGekvvkaepeiGylhrGieklaekktytqalpytdrldylsslvnelayvlavekLlgievPeraqvirvllaelnrisshllaigtkaldlGamtallyafrerekvldllekvtGarlhsayiriGGvaeDLPenlleeieefleklpkklkeleelleenriwkartegvgvvsakealdlGltGvmLrasGveyDvrkeePyevyeeldfdvivgeegDsydrylvrveelreslkiieqcleklregpvkadnrklalpakeelktsmealiqhfklvteGlkvPagevyvavespkGelgvyiisdGstkpyrlkiraPsfahlqaleevlkgkllaDliailgsidivlgevD 385
                 +++ln+GPqhP+ahGvlrl+lel+Ge+v++a+p+iG+lhrG+ekl+e+k y+qalpy+drldy+s++++e+ y +avekL++++vP+ra vir+++ e++ri++hlla++ +ald+Ga+t+++++f+erek+++++e+v+Gar+h+ayir+GGv+ DLP ++ e+i +f++++p++l+e+eell+  riwk+r++++g+vsa++ald+G+tGvmLr+sGv++D+rk++Pye+y el f v++g++gD+ydryl+rvee+r+s ++i qcl+ l++g vk+d+rkl++p+++e+k +me+li+hfkl+teG+ +P ge+y+a e+pkGe+gvy++sdG+++pyr++iraP+f+hlq+l+ +++g++laD++ai+g++div+ge+D
  MMETSP1137-20121227|7949_1  58 NFTLNFGPQHPAAHGVLRLVLELNGEYVERADPHIGLLHRGTEKLIEYKNYQQALPYFDRLDYVSMMAQEHCYSMAVEKLVNVTVPRRASVIRTMFCEITRILNHLLAVSCHALDVGATTPFMWMFEEREKLMEFYERVSGARMHAAYIRPGGVHADLPMGMSEDIYHFCQQFPHRLDEMEELLTGSRIWKQRLVDIGYVSADQALDWGFTGVMLRGSGVPWDLRKAQPYEIYPELKFIVPTGRNGDCYDRYLLRVEEMRQSTHMIVQCLNLLEPGLVKVDDRKLSPPPRSEMKGDMESLIHHFKLYTEGYAPPPGETYTACEAPKGEFGVYLVSDGTNRPYRCHIRAPGFCHLQGLDFMAHGHMLADVVAIIGTQDIVFGEID 441
                 689********************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************9 PP

>> TIGR03295  frhA: coenzyme F420 hydrogenase, subunit alpha
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.0   1.2e-07   0.00025      15     193 ..      72     242 ..      66     254 .. 0.83

  Alignments for each domain:
  == domain 1    score: 17.9 bits;  conditional E-value: 1.2e-07
   TIGR03295  15 GhaklvlkvddeGivekgdylsitPvrGlekllvGkaaefaPiivsricGicpiahtlasveaiedsidievPkdglllrelvgianrlhshalhellilpdfipeadtklkvevikriqrlrkvgqlvvdivgGeaihpsnirvGGmlknitekakkklyaklkeleklakeqvelli 193
                 G  +lvl+++ e  ve++d       rG ekl+  k  ++a     r+  +  +a   +   a+e+ ++++vP+ + ++r++     r+  h l     + d+   +           + + r+      + v+G  +h++ ir GG++ ++     + +y+ ++++ ++ +e  ell+
  MMETSP1137-20121227|7949_1  72 GVLRLVLELNGE-YVERADPHIGLLHRGTEKLIEYKNYQQALPYFDRLDYVSMMAQEHCYSMAVEKLVNVTVPRRASVIRTMFCEITRILNHLLAVSCHALDVGATTP-------FMWMFEEREKLMEFYERVSGARMHAAYIRPGGVHADLPMGMSEDIYHFCQQFPHRLDEMEELLT 242
                 556788888877.5677776666678********************************************************99999998887766666656533333.......233344456666678999*********************************9999888887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (537 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       169  (0.0411994); expected 82.0 (0.02)
Passed bias filter:                      141  (0.0343735); expected 82.0 (0.02)
Passed Vit filter:                        18  (0.0043881); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.18s 00:00:00.63 Elapsed: 00:00:00.64
# Mc/sec: 1107.47
//
Query:       MMETSP1137-20121227|7951_1  [L=601]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.9e-21   74.3   0.0    3.7e-21   73.4   0.0    1.4  1  TIGR01181 dTDP_gluc_dehyt: dTDP-glucose 4,6-dehydratase
    1.7e-15   54.7   0.0      2e-14   51.2   0.0    2.2  1  TIGR04180 EDH_00030: NAD dependent epimerase/dehydratase, LLPSF_EDH_00030 family
    1.8e-15   54.5   0.0      7e-15   52.5   0.0    1.8  1  TIGR01179 galE: UDP-glucose 4-epimerase
    2.4e-12   44.5   0.0    5.9e-12   43.2   0.0    1.6  1  TIGR02197 heptose_epim: ADP-glyceromanno-heptose 6-epimerase
  ------ inclusion threshold ------
      0.012   12.4   0.0      0.047   10.4   0.0    1.9  2  TIGR03589 PseB: UDP-N-acetylglucosamine 4,6-dehydratase
      0.014   12.3   1.0      0.023   11.6   0.0    1.8  2  TIGR01214 rmlD: dTDP-4-dehydrorhamnose reductase


Domain annotation for each model (and alignments):
>> TIGR01181  dTDP_gluc_dehyt: dTDP-glucose 4,6-dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.4   0.0   5.4e-24   3.7e-21       4     314 ..       9     356 ..       6     361 .. 0.73

  Alignments for each domain:
  == domain 1    score: 73.4 bits;  conditional E-value: 5.4e-24
   TIGR01181   4 vtGGaGfiGsnfvryileetpdaevvvlDkLtyagnkenlkdled.eerysfvkgdiadr.elverllkeedvdavvnfaaeshvDrsisepeafietnvvGtytlleavrkelkevrllhistDevyGd......lekdd.ae..f.tettpla..PssP....ysaskaasdllvrayartyglpvlitrcsnnyGpy.qf..........pekliPllitnalagkklpvyGdGqqvrDwlyveDhcraielvlekg..rvgevyniggeeer.tnlevvkiilelldk...........dedlieyvedrpGhDrryaldaski.kreLgwkpkvtfeeglrktvkWylen 314
                 + G aGfiGs ++++i++e  d++v+  D ++ +  +e l   ++  +r++f + +i ++ ++++ l+++   d+vvn+aa     + i++p + i++n+  ++  ++ + +   + +l+h st evyG       l ++d ++    +ettp+   P s     y+ +k   + l+ a+    gl+ +i+r+ n  Gp  ++            +++  ++t  ++g++l++   G+  r + +veD c a+  ++e+   ++g+ +n+g  +++ +  ++ ++++++  k            +    y +     D+r  + + k+ k++L w+p +++e +++ t++ ++e+
  MMETSP1137-20121227|7951_1   9 IVGVAGFIGSHMLEKIIRER-DWTVLGCDMVAPTKIQELLGAEKKwAARFEFHQMNIVEEpQKLKALIARA--DCVVNLAAICNPSEYIKQPVNTINSNFTDAQDCINYCVE--LKKHLIHFSTCEVYGRtlssygLDAKDeKNwlLdEETTPMImgPVSAqrwcYACAKQLVERLIFAHGTENGLKFTIVRPYNWIGPRmDYipgvdgkddgQPRVLASFMTALMKGEPLVLVNGGEVFRTFCFVEDACDAVMRMIEHPdkSSGHAFNVGNPNNNiQISKLAELMINMYSKitgkpkgttvsISGEEYYGKGYEDSDLR--IPSMKLvKKQLDWTPPTSLETAMEATMRVFIEK 356
                 7899**************98.9********9998888888544432689*******988736788888754..6******************************99999988..4678***********7222222222221221121455553222444222226666666777778899999**************9523322222211113467788899999******************************998622579999*998665514556777777777778888987665533333456666666666..6666642679****************9988765 PP

>> TIGR04180  EDH_00030: NAD dependent epimerase/dehydratase, LLPSF_EDH_00030 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.2   0.0     3e-17     2e-14       2     256 ..       8     293 ..       7     299 .. 0.76

  Alignments for each domain:
  == domain 1    score: 51.2 bits;  conditional E-value: 3e-17
   TIGR04180   2 lvtGadGfiGshlvealvekGaevralvlynsfnswGwldevekevkkeievvlGdi.rdaesvkkavkgvdvvfhlaaliaiPysyv.apesyvetnvkGtlnvlqaardlevekvvhtstsevyGta...........qyvPidekh......plqaqs.PysaskigadqlalsfyrsfelPvaivrPfntyGPr...........qsaraviPtiitqilsgkkkiklGslsPtrdfnyvkdtvegfiavaes.dkavGevinigs.nfeisigdtvkliaeil 256
                  + G  GfiGsh+ e+++++       +   + ++   l  +ek+   ++e  + +i  +++ +k+ +  +d v+ laa+   P  y+  p + +++n + + + ++ + +l+ ++++h st evyG +           +   +de+       p++aq   y+ +k   ++l  ++ +   l  +ivrP+n  GPr                v+ + +t +++g+  + +   +  r f +v+d++++++++ e+ dk+ G+ +n+g+ n +i i+++++l++++ 
  MMETSP1137-20121227|7951_1   8 CIVGVAGFIGSHMLEKIIRERDWTVLGCDMVAPTKIQELLGAEKKWAARFEFHQMNIvEEPQKLKALIARADCVVNLAAIC-NPSEYIkQPVNTINSNFTDAQDCINYCVELK-KHLIHFSTCEVYGRTlssygldakdeKNWLLDEETtpmimgPVSAQRwCYACAKQLVERLIFAHGTENGLKFTIVRPYNWIGPRmdyipgvdgkdDGQPRVLASFMTALMKGEPLVLVNGGEVFRTFCFVEDACDAVMRMIEHpDKSSGHAFNVGNpNNNIQISKLAELMINMY 293
                 6899**************987655555666677777777777789999999988776267899***************965.6777752799******************998.789**********6522111111111222344443222222445554357888888888888888889999*************333322222211345699999*********9999999999**************9876537899******975889******99998765 PP

>> TIGR01179  galE: UDP-glucose 4-epimerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.5   0.0     1e-17     7e-15       2     320 ..       7     348 ..       6     356 .. 0.72

  Alignments for each domain:
  == domain 1    score: 52.5 bits;  conditional E-value: 1e-17
   TIGR01179   2 iLvtGgaGyiGshvvrql.lekgkevvvlDnlskgskealkalekit..evklvegdladk.ekleavleeekidaviHfaaliavgEsvkePlkYYennvvntleLleamqkagvkkliFsssaavYges...........ekvpisEe...splnpinp....YGrsklmvErilkdlkkadkelkvviLRYFnvaGAdeegeiGea..sknathliklvaevavgkrekleifGtdyptkDGtcvRDyiHveDlaeaHlaalealeeggesevynlGagqgf.svke....vieavkkvsgkdikvela.......drRaGDpaslvadaskikrelgwkpkyddLeeiiks 320
                 + ++G aG+iGsh++ ++ +e++  v+  D ++ ++ + l   ek    ++++ + ++ ++ +kl+a++++   d v+ +aa  +  E +k+P++  ++n +++   ++ +++ + k+li  s++ vYg++           ++  + Ee   + ++p++     Y  +k  vEr++ +  +  ++lk++i+R +n +G  +++  G +    ++++++ + + + + k e l +       + G   R +  veD  +a ++ +e    ++  +++n+G+ + +  + +    +i+  +k++gk+  ++++        +   D    + + + +k++l+w+p    Le+ ++ 
  MMETSP1137-20121227|7951_1   7 VCIVGVAGFIGSHMLEKIiRERDWTVLGCDMVAPTKIQELLGAEKKWaaRFEFHQMNIVEEpQKLKALIAR--ADCVVNLAAICNPSEYIKQPVNTINSNFTDAQDCINYCVELK-KHLIHFSTCEVYGRTlssygldakdeKNWLLDEEttpMIMGPVSAqrwcYACAKQLVERLIFAHGTE-NGLKFTIVRPYNWIGPRMDYIPGVDgkDDGQPRVLASFMTALM-KGEPLVLV------NGGEVFRTFCFVEDACDAVMRMIEHPD-KSSGHAFNVGNPNNNiQISKlaelMINMYSKITGKPKGTTVSisgeeyyGKGYEDSDLRIPSMKLVKKQLDWTPPTS-LETAMEA 348
                 5699*********9977516788899999*999998887776665545899*****986553889999875..699************************************987.6788889*****97622222211111233445542222344666344449***********988665.********************76655116678899988887666.55555542......347899************999999877.57889*****8654313433112368888999987543332211111113444466666777777777777777666.6666655 PP

>> TIGR02197  heptose_epim: ADP-glyceromanno-heptose 6-epimerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.2   0.0   8.6e-15   5.9e-12       2     245 ..       8     277 ..       7     300 .. 0.75

  Alignments for each domain:
  == domain 1    score: 43.2 bits;  conditional E-value: 8.6e-15
   TIGR02197   2 ivTGgaGfiGsnlvaalnekgetdilvvDklrk.........gekllnlkdeeiadyidkeellerlekeelkkveavfHegAisdTteldgell..menNyeyskellelcaekevkliYASSAavYGdseeefreekele..................rPlNvYgySKllfDelvrkevlkekksaqvvGlryFNVyGprEeh......Kgkma.SvvfklfnqikkekkvkLFksseqlkdGeqlRDFvyvkDvvkvnllllekkeks.G.ifnvGtgk 245
                  + G aGfiGs ++ ++ ++    +l +D +           ++k++   + + ++++++++ l+ l +    + ++v+  +Ai +  e  ++ +  +++N++  ++ +++c+e +++li  S   vYG++ +++  +++ e                      +Y+ +K l+++l+  +   +++  +++ +r +N  Gpr ++      K++ +  v++ +++ ++k++ + L +  e +      R F +v+D  ++++ ++e+++ks G  fnvG  +
  MMETSP1137-20121227|7951_1   8 CIVGVAGFIGSHMLEKIIRERDWTVLGCDMVAPtkiqellgaEKKWAARFEFHQMNIVEEPQKLKALIA----RADCVVNLAAICNPSEYIKQPVntINSNFTDAQDCINYCVELKKHLIHFSTCEVYGRTLSSYGLDAKDEknwlldeettpmimgpvsAQRWCYACAKQLVERLIFAHG--TENGLKFTIVRPYNWIGPRMDYipgvdgKDDGQpRVLASFMTALMKGEPLVLVNGGEVF------RTFCFVEDACDAVMRMIEHPDKSsGhAFNVGNPN 277
                 689**************************9988666667764447776666677777777777777765....79**********9998877655337899999*************************988777555444446899999*999994443334467777777777777443..3333456667789*9****9995555554444415666777777777777777666666......*******************977525579999765 PP

>> TIGR03589  PseB: UDP-N-acetylglucosamine 4,6-dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   6.9e-05     0.047       2     125 ..       2     127 ..       1     139 [. 0.76
   2 ?   -1.2   0.0      0.23   1.6e+02     154     178 ..     185     209 ..     168     244 .. 0.72

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 6.9e-05
   TIGR03589   2 lnnksilitGgtGsfGkkfikkllekykvkkiiiysrdelkqfelqqkfee.....dklrff.iGdvrdkerleraledvdlvvhaaalkqvpaaeynPleciktnieGaenvidaaldkgvkkvvalst 125
                  ++k + i G +G  G ++++k++++ +     +   d +   ++q+   +      ++ f  +  v + ++l++ +   d+vv  aa+ +       P+++i++n + a++ i+ +++ + k+++ +st
  MMETSP1137-20121227|7951_1   2 SESKCVCIVGVAGFIGSHMLEKIIRERDW---TVLGCDMVAPTKIQELLGAekkwaARFEFHqMNIVEEPQKLKALIARADCVVNLAAICNPSEYIKQPVNTINSNFTDAQDCINYCVELK-KHLIHFST 127
                 57889999999999999999999987665...455666666666666653322333555555244567789999999************887777779*******************9865.55666666 PP

  == domain 2    score: -1.2 bits;  conditional E-value: 0.23
   TIGR03589 154 GekktrfsvvryGnvvGsrGsvvPf 178
                  e++++f++vr  n +G r   +P 
  MMETSP1137-20121227|7951_1 185 TENGLKFTIVRPYNWIGPRMDYIPG 209
                 467899***********99999985 PP

>> TIGR01214  rmlD: dTDP-4-dehydrorhamnose reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   3.3e-05     0.023       2     104 ..       7     131 ..       6     166 .. 0.77
   2 ?   -2.9   0.8      0.87     6e+02     202     257 ..     383     436 ..     363     451 .. 0.62

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 3.3e-05
   TIGR01214   2 ilitGakgqlgreLveqlsk.egsevvaltrs......................qldl.edpealeellreikPdvvvntaAytdVDkaEseaekayavNalatenlAraaarvgallvhiSTDYvF 104
                 + i+G +g +g+++ e++ +  +++v+  +                        q+++ e+p++l+ l+     d vvn aA  +  +  +++ +  + N++ ++   + + +++  l+h ST  v+
  MMETSP1137-20121227|7951_1   7 VCIVGVAGFIGSHMLEKIIReRDWTVLGCDMVaptkiqellgaekkwaarfefhQMNIvEEPQKLKALIAR--ADCVVNLAAICNPSEYIKQPVNTINSNFTDAQDCINYCVELKKHLIHFSTCEVY 131
                 56788888888887777765333333333333566668888888888888888888863778888888876..79**********99999999999999************************8776 PP

  == domain 2    score: -2.9 bits;  conditional E-value: 0.87
   TIGR01214 202 rgvyHlanegqvSwyefaqaifevleeeglelkveevkpisskeyptpArRpaySv 257
                 +   H  + ++vS + +a a ++ ++ +   + ++   ++  ++++++A+R a S 
  MMETSP1137-20121227|7951_1 383 ATHAHTHSMQTVSAHTHAVAHAAPAQPQN--AAAPGRAALGRAALGRAAPRRARSL 436
                 33446666666777766665555555444..4455566777777777887777775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (601 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       169  (0.0411994); expected 82.0 (0.02)
Passed bias filter:                      108  (0.0263286); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.81
# Mc/sec: 979.33
//
Query:       MMETSP1137-20121227|7952_1  [L=644]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (644 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        86  (0.0209654); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.21s 00:00:00.56 Elapsed: 00:00:00.44
# Mc/sec: 1931.84
//
Query:       MMETSP1137-20121227|7953_1  [L=152]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (152 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        72  (0.0175524); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.18s 00:00:00.28 Elapsed: 00:00:00.32
# Mc/sec: 626.95
//
Query:       MMETSP1137-20121227|7954_1  [L=250]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (250 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        97  (0.023647); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.20s 00:00:00.40 Elapsed: 00:00:00.44
# Mc/sec: 749.94
//
Query:       MMETSP1137-20121227|7955_1  [L=374]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (374 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       114  (0.0277913); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.17s 00:00:00.46 Elapsed: 00:00:00.28
# Mc/sec: 1702.20
//
Query:       MMETSP1137-20121227|7956_1  [L=380]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.038   10.8   0.5      0.067   10.0   0.0    1.5  2  TIGR01536 asn_synth_AEB: asparagine synthase (glutamine-hydrolyzing)


Domain annotation for each model (and alignments):
>> TIGR01536  asn_synth_AEB: asparagine synthase (glutamine-hydrolyzing)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.1       0.1   4.1e+02     405     424 ..     102     121 ..      55     162 .. 0.44
   2 ?   10.0   0.0   1.6e-05     0.067     226     270 ..     249     296 ..     212     305 .. 0.85

  Alignments for each domain:
  == domain 1    score: -2.5 bits;  conditional E-value: 0.1
   TIGR01536 405 eselkellkakleeelkeke 424
                 ++++++  ++ +++ ++ ++
  MMETSP1137-20121227|7956_1 102 SNATARRPQRYFTRRTHAST 121
                 11111111111111111111 PP

  == domain 2    score: 10.0 bits;  conditional E-value: 1.6e-05
   TIGR01536 226 vkeseeelveelrelledavkkrlvadvpvgvl...lSGGlDSslvaa 270
                 v++  e+  + ++++l  av+   vad++vg+l   lS GlD  ++ +
  MMETSP1137-20121227|7956_1 249 VAALAEQRHDGVDRALSVAVEDAQVADAEVGLLndqLSAGLDAAAIQC 296
                 56667888999*********************8888******999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (380 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       145  (0.0353486); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.27u 0.16s 00:00:00.43 Elapsed: 00:00:00.45
# Mc/sec: 1114.57
//
Query:       MMETSP1137-20121227|7957_1  [L=408]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (408 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       120  (0.029254); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.17s 00:00:00.48 Elapsed: 00:00:00.36
# Mc/sec: 1495.88
//
Query:       MMETSP1137-20121227|7958_1  [L=505]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (505 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       121  (0.0294978); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.16s 00:00:00.51 Elapsed: 00:00:00.59
# Mc/sec: 1129.74
//
Query:       MMETSP1137-20121227|7959_1  [L=511]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0075   13.4   2.3      0.017   12.2   1.6    1.5  1  TIGR00599 rad18: DNA repair protein rad18


Domain annotation for each model (and alignments):
>> TIGR00599  rad18: DNA repair protein rad18
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.2   1.6     4e-06     0.017      29      74 ..     440     493 ..     428     498 .. 0.78

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 4e-06
   TIGR00599  29 ChvCkd.ffkaPvl....tsCsHtFCslCiRrcLse...epkCPlCraedqEsk 74 
                 C +C + f ++P+     t C H F   Ci+++L e     kCP+Cr +  Es+
  MMETSP1137-20121227|7959_1 440 CGLCTEkFGDTPLWpvsrTLCRHLFHDTCIKQVLFEseaRRKCPICRLPLEESL 493
                 66776525577764444589*************965212579*******99996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (511 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        95  (0.0231594); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.16s 00:00:00.52 Elapsed: 00:00:00.48
# Mc/sec: 1405.13
//
Query:       MMETSP1137-20121227|7960_1  [L=562]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.3e-09   35.2   0.0    5.9e-07   26.4   0.0    2.1  2  TIGR02160 PA_CoA_Oxy5: phenylacetate-CoA oxygenase/reductase, PaaK subunit
    9.2e-08   29.3   0.0    1.5e-07   28.6   0.0    1.2  1  TIGR02911 sulfite_red_B: sulfite reductase, subunit B


Domain annotation for each model (and alignments):
>> TIGR02160  PA_CoA_Oxy5: phenylacetate-CoA oxygenase/reductase, PaaK subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.4   0.0   2.9e-10   5.9e-07      29     137 ..     281     389 ..     262     405 .. 0.84
   2 !    6.6   0.0    0.0003      0.62     210     242 ..     529     561 ..     498     562 .] 0.75

  Alignments for each domain:
  == domain 1    score: 26.4 bits;  conditional E-value: 2.9e-10
   TIGR02160  29 edyrfepGqhlt.lkaeldGeelrrsysicdavadgeirvavkkieGGlfstwaneeiraGdtlevmaPqGrftskldaerakhyvavaaGsGitPilaivktvlaaepk 137
                 + ++++ Gq++  l  el   +l   +si ++++++++r+ v++        +     ++  t  +  P G+++ +l+ +r kh ++v+ G GitP+ +i ++ l ++ +
  MMETSP1137-20121227|7960_1 281 KGFQYKAGQYVFvLIPELSWLQL-HPFSISSSPQEDTVRIHVRVLGDWTKKLHDLASTKKEVTAFIDGPVGELGVDLEGSRYKHVLLVSGGIGITPMQSICNSLLDQHAR 389
                 56899999998515566766665.68*****************986655555556678999999999*************************************998766 PP

  == domain 2    score: 6.6 bits;  conditional E-value: 0.0003
   TIGR02160 210 aflcGPaalvddaedalkalGvdsekvhlelft 242
                 +  cGPaa++++ ++  + +  ++  vh elf+
  MMETSP1137-20121227|7960_1 529 VLGCGPAAMIKQLQKLCHERKFANFDVHTELFE 561
                 345****************************96 PP

>> TIGR02911  sulfite_red_B: sulfite reductase, subunit B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.6   0.0   7.2e-11   1.5e-07      29     121 ..     283     383 ..     273     428 .. 0.85

  Alignments for each domain:
  == domain 1    score: 28.6 bits;  conditional E-value: 7.2e-11
   TIGR02911  29 gevkpgqffevslpkyg...eapisvsei.gegyvdltirkvgkvtdevfelkegdk...lflrgpygn.gfdvdnykdkelvvvaggtgvapvkgvveyf 121
                 ++ k gq++ v +p +      p s+s    e++v + +r +g  t+++++l   +k    f+ gp g+ g d++  + k++++v+gg g++p++ + + +
  MMETSP1137-20121227|7960_1 283 FQYKAGQYVFVLIPELSwlqLHPFSISSSpQEDTVRIHVRVLGDWTKKLHDLASTKKevtAFIDGPVGElGVDLEGSRYKHVLLVSGGIGITPMQSICNSL 383
                 67899*********9762225899998762689*****************99776643337*******87*************************998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (562 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       133  (0.0324232); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.18s 00:00:00.56 Elapsed: 00:00:00.35
# Mc/sec: 2119.37
//
Query:       MMETSP1137-20121227|7961_1  [L=285]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (285 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        52  (0.0126767); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.14s 00:00:00.35 Elapsed: 00:00:00.38
# Mc/sec: 989.92
//
Query:       MMETSP1137-20121227|7962_1  [L=128]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.028   11.9   0.3      0.037   11.5   0.2    1.1  1  TIGR03789 pdsO: proteobacterial sortase system OmpA family protein
      0.046    9.2   0.6      0.055    8.9   0.4    1.0  1  TIGR02169 SMC_prok_A: chromosome segregation protein SMC
      0.065   10.9   1.7      0.059   11.1   0.4    1.7  1  TIGR03042 PS_II_psbQ_bact: photosystem II protein PsbQ
      0.096    8.4   3.7       0.12    8.1   2.6    1.0  1  TIGR00618 sbcc: exonuclease SbcC


Domain annotation for each model (and alignments):
>> TIGR03789  pdsO: proteobacterial sortase system OmpA family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.2   3.6e-05     0.037      94     170 ..      26     104 ..      22     109 .. 0.90

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 3.6e-05
   TIGR03789  94 eqqlvaltekqqaleqleaeyqqaqkeletlqqeqeqlleelalemnv..qFrTGSseiephfqeQldevaellkqspe 170
                  +  ++l+ ++q ++q++a+ ++++k + tl++  +q  +el+l+  +      G    ++h ++Q d++  llk+s +
  MMETSP1137-20121227|7962_1  26 PSTAAVLQRQDQVMQQQDASLDELHKSVRTLKKMGGQIHDELNLQSGLldDLERGVDLTNSHLRSQRDRMKLLLKKSKD 104
                 56778899999******************************9998877557999****************999999976 PP

>> TIGR02169  SMC_prok_A: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   0.4   5.4e-05     0.055     698     767 ..      32     101 ..      25     107 .. 0.88

  Alignments for each domain:
  == domain 1    score: 8.9 bits;  conditional E-value: 5.4e-05
   TIGR02169 698 lrriekrldelssklsdaekkieeiekeleqleeeeeklkerleeleeklseleeeleekkeelkeleae 767
                 l+r+++ +++  ++l++ +k++++++k   q+++e + ++  l++le+ ++ ++ +l  +++++k l ++
  MMETSP1137-20121227|7962_1  32 LQRQDQVMQQQDASLDELHKSVRTLKKMGGQIHDELNLQSGLLDDLERGVDLTNSHLRSQRDRMKLLLKK 101
                 6889999999999***********************************9999999999999999877655 PP

>> TIGR03042  PS_II_psbQ_bact: photosystem II protein PsbQ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.4   5.7e-05     0.059      12      61 ..       5      55 ..       1     107 [. 0.77

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 5.7e-05
   TIGR03042 12 vltlLvscsgpaaak.patyspedlekiqrqveeieaakdrldeLkslvak 61
                ++ l+++  +p+ +  p+  +p+  +++qrq + ++++  +ldeL+++v  
  MMETSP1137-20121227|7962_1  5 LAGLVMASTAPTLQPlPPVGQPSTAAVLQRQDQVMQQQDASLDELHKSVRT 55
                55677788888887789******************************9975 PP

>> TIGR00618  sbcc: exonuclease SbcC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   2.6   0.00011      0.12     329     397 ..      34     103 ..      25     107 .. 0.86

  Alignments for each domain:
  == domain 1    score: 8.1 bits;  conditional E-value: 0.00011
   TIGR00618 329 akraalvkqessleeqrrllqtllsqeeelrdeaekeksireeleqqkeleq.hlkklqqqkealkqklq 397
                  + + +++q +sl+e +++  tl +   ++ de + + + ++ le+   l++ hl+ + + +  l+ k++
  MMETSP1137-20121227|7962_1  34 RQDQVMQQQDASLDELHKSVRTLKKMGGQIHDELNLQSGLLDDLERGVDLTNsHLRSQRDRMKLLLKKSK 103
                 34567889999************************************99975499999999988888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (128 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       336  (0.0819113); expected 82.0 (0.02)
Passed bias filter:                      253  (0.0616772); expected 82.0 (0.02)
Passed Vit filter:                        22  (0.00536324); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.23u 0.20s 00:00:00.43 Elapsed: 00:00:00.35
# Mc/sec: 482.70
//
Query:       MMETSP1137-20121227|7963_1  [L=723]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (723 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        69  (0.0168211); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.10s 00:00:00.52 Elapsed: 00:00:00.61
# Mc/sec: 1564.40
//
Query:       MMETSP1137-20121227|7964_1  [L=222]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.2e-14   51.8   0.0    2.6e-14   51.5   0.0    1.1  1  TIGR02933 nifM_nitrog: nitrogen fixation protein NifM


Domain annotation for each model (and alignments):
>> TIGR02933  nifM_nitrog: nitrogen fixation protein NifM
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.5   0.0   6.4e-18   2.6e-14     127     223 ..     102     194 ..      62     217 .. 0.83

  Alignments for each domain:
  == domain 1    score: 51.5 bits;  conditional E-value: 6.4e-18
   TIGR02933 127 rhlLltvneddreavrerieallrrlrakreafaelaerhseCPtalegGlLGwvsrGlLypeLdaaLfqlaegeLsavieselGwhlLlCeairpa 223
                  h++l      +e +  ++   +r + +++e+fae a + s C ++ +gG LG v+rG L  + d+ +f+ + g +  ++ se G+hl++  + r +
  MMETSP1137-20121227|7964_1 102 SHIMLRG----SEVAVAQLIEWKREIADDEELFAERARQSSACRSSAKGGDLGFVTRGKLTKQFDDVIFSEEPGYVYGPVTSEFGHHLIFLHSCREP 194
                 4666655....66667778889*******************************************************************98888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (222 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        75  (0.0182838); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.20u 0.16s 00:00:00.36 Elapsed: 00:00:00.36
# Mc/sec: 813.93
//
Query:       MMETSP1137-20121227|7965_1  [L=127]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (127 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       134  (0.032667); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.13s 00:00:00.29 Elapsed: 00:00:00.34
# Mc/sec: 493.02
//
Query:       MMETSP1137-20121227|7966_1  [L=218]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.3e-17   59.0   0.0    1.5e-16   58.4   0.0    1.2  1  TIGR02540 gpx7: putative glutathione peroxidase Gpx7


Domain annotation for each model (and alignments):
>> TIGR02540  gpx7: putative glutathione peroxidase Gpx7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.4   0.0   3.6e-20   1.5e-16      54     149 ..      95     198 ..      81     202 .. 0.80

  Alignments for each domain:
  == domain 1    score: 58.4 bits;  conditional E-value: 3.6e-20
   TIGR02540  54 shfnvlafpcnqfgesepksskeiesfarknygvtfpifskikilgseaepafrflvdss.....kkep...rwnfwkylvdpegkvvkawkpeesveeirpei 149
                 ++++vlafpcnqf  +ep+  +++e+  r ++ v f  ++k+ + g+ +++ +rfl   +     + ep    wnf  +lv+p+g  v+ +  + +  +i  ei
  MMETSP1137-20121227|7966_1  95 EKLEVLAFPCNQFLGQEPDDAEQVETCMRAKFDVNFRTMEKVLVNGPSTHAVYRFLRTKAaasdgDSEPgpiGWNFCMFLVSPDGARVQRFAASRTPLSITAEI 198
                 4689****************************************************65331111134663345************9999887776665665555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (218 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        33  (0.00804486); expected 82.0 (0.02)
Passed bias filter:                       32  (0.00780107); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.19u 0.17s 00:00:00.36 Elapsed: 00:00:00.39
# Mc/sec: 737.79
//
Query:       MMETSP1137-20121227|7968_1  [L=336]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (336 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       192  (0.0468064); expected 82.0 (0.02)
Passed bias filter:                      149  (0.0363237); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.13s 00:00:00.42 Elapsed: 00:00:00.56
# Mc/sec: 778.04
//
Query:       MMETSP1137-20121227|7969_1  [L=505]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (505 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       109  (0.0265724); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.16s 00:00:00.49 Elapsed: 00:00:00.57
# Mc/sec: 1149.22
//
Query:       MMETSP1137-20121227|7970_1  [L=428]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (428 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       134  (0.032667); expected 82.0 (0.02)
Passed bias filter:                      119  (0.0290102); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.15s 00:00:00.46 Elapsed: 00:00:00.46
# Mc/sec: 1228.07
//
Query:       MMETSP1137-20121227|7971_1  [L=229]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (229 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       147  (0.0358362); expected 82.0 (0.02)
Passed bias filter:                      116  (0.0282789); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.17s 00:00:00.40 Elapsed: 00:00:00.37
# Mc/sec: 816.91
//
Query:       MMETSP1137-20121227|7972_1  [L=203]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.1e-28   98.0   0.0    1.3e-28   97.7   0.0    1.0  1  TIGR00231 small_GTP: small GTP-binding protein domain
     0.0011   15.8   0.0      0.015   12.2   0.0    2.0  1  TIGR03594 GTPase_EngA: ribosome-associated GTPase EngA
      0.009   13.0   0.0       0.28    8.1   0.0    2.0  2  TIGR03597 GTPase_YqeH: ribosome biogenesis GTPase YqeH
  ------ inclusion threshold ------
      0.031   11.0   0.0      0.053   10.2   0.0    1.3  1  TIGR03156 GTP_HflX: GTP-binding protein HflX


Domain annotation for each model (and alignments):
>> TIGR00231  small_GTP: small GTP-binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.7   0.0   1.3e-31   1.3e-28       4     162 ..       8     164 ..       6     166 .. 0.96

  Alignments for each domain:
  == domain 1    score: 97.7 bits;  conditional E-value: 1.3e-31
   TIGR00231   4 ikivivGhvdvGKstLlnsllknkisiteskpgvtrdyvteqieedGktykvnllDTaGqedfdairrlyvreverslevvdivilvldveeglekqtkeiiheakkkgvpiilvvnKiDlkd..dlktkvkslfaklnaepiielsaetgknidklfklv 162
                 +k+v++G++ vGK++L  ++ k++ + ++  p+v  +y  +q  +  k++ + ++DTaGqe+f a+ ++y+r++++ l v+di+   +++ +++ ++ +e+++ +  +g+++++++nK Dl+    + ++ +++ a + ++ + e+sa+tg++i+++f ++
  MMETSP1137-20121227|7972_1   8 AKVVLLGEGRVGKTSLVLRFCKDT-FTEAQPPTVQASYLDKQLVIGDKKINMAIWDTAGQERFHALGPIYYRDADAALLVFDITDT-ESFAKVK-NWVRELRKMVG-EGIVLLIAGNKTDLERqrLVGQQSAQEYASSVGACYAETSAKTGRGIEEAFSTL 164
                 79**********************.8888889******************************************************.*******.***********.****************9888999999999999999***************9865 PP

>> TIGR03594  GTPase_EngA: ribosome-associated GTPase EngA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.2   0.0   1.4e-05     0.015     177     343 ..       9     165 ..       2     172 .. 0.58

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 1.4e-05
   TIGR03594 177 kiaiiGrpNvGKStLvNallgeervivsdiaGtTr.Dsidievevkgkk..ylliDTAGirrkkkveekveklsvlrtlkaieradvvllvlDat..egiseqDlkiaglileegkalv..ivvNKwDlvkdekeleelkkeleeklkflkfapivfiSAltgkgveklleaik 343
                 k+ ++G   vGK +Lv ++++++   ++ ++ t +    d ++ + +kk  + + DTAG  r + +                ++ad +llv+D+t  e++ +    + +l +  g ++v  i+ NK+Dl     +++ + ++  ++++    a    +SA+tg+g+e+ ++++ 
  MMETSP1137-20121227|7972_1   9 KVVLLGEGRVGKTSLVLRFCKDT--FTEAQPPTVQaSYLDKQLVIGDKKinMAIWDTAGQERFHALG----P-------IYYRDADAALLVFDITdtESFAKVKNWVRELRKMVGEGIVllIAGNKTDLE----RQRLVGQQSAQEYASSVGACYAETSAKTGRGIEEAFSTLA 165
                 55566666666666666655543..333333333303345555554444224455666644433322....1.......124677888888887633566777766666655555555411667999998....5556666667777777788888999999999999887765 PP

>> TIGR03597  GTPase_YqeH: ribosome biogenesis GTPase YqeH
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.1   0.0   0.00027      0.28     152     215 ..       4      66 ..       1      75 [. 0.82
   2 !    3.1   0.0    0.0093       9.5      69     103 ..      84     124 ..      72     141 .. 0.75

  Alignments for each domain:
  == domain 1    score: 8.1 bits;  conditional E-value: 0.00027
   TIGR03597 152 arekkdvyvvGvtNVGKSsliNkllklnkgkkk.vittSkfpgTTldlieipldkesvllDtpGi 215
                 ar + +v+++G   VGK sl+ + +k + ++ +   +  ++ +  l + + ++  +  + Dt+G 
  MMETSP1137-20121227|7972_1   4 ARLQAKVVLLGEGRVGKTSLVLRFCKDTFTEAQpPTVQASYLDKQLVIGDKKI--NMAIWDTAGQ 66 
                 555789*******************9988777755677788888888888888..7889999985 PP

  == domain 2    score: 3.1 bits;  conditional E-value: 0.0093
   TIGR03597  69 vavvDifdle.....gslikelkrfvkenkvllv.vNKidl 103
                 + v+Di d e     + +++el+++v+e  vll+ +NK dl
  MMETSP1137-20121227|7972_1  84 LLVFDITDTEsfakvKNWVRELRKMVGEGIVLLIaGNKTDL 124
                 45666666552222247999********99999856***98 PP

>> TIGR03156  GTP_HflX: GTP-binding protein HflX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   5.2e-05     0.053     267     350 ..      78     167 ..      76     168 .. 0.80

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 5.2e-05
   TIGR03156 267 aeadlllhvvDasdeeaeeqieaveevLeelgaeeipvllvlNkidkleeeeleeleekk.ee.....avlvsAkkgegleeLleaieea 350
                 ++ad  l v D++d e  +++++  + L+++  e i  l++ Nk+d+ +++ + ++++++ ++         sAk+g+g+ee  ++++++
  MMETSP1137-20121227|7972_1  78 RDADAALLVFDITDTESFAKVKNWVRELRKMVGEGIVLLIAGNKTDLERQRLVGQQSAQEyASsvgacYAETSAKTGRGIEEAFSTLARQ 167
                 579999**************9999999999999*************99977666665555322233336778999999999887777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (203 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       164  (0.0399805); expected 82.0 (0.02)
Passed bias filter:                      153  (0.0372989); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.26u 0.17s 00:00:00.43 Elapsed: 00:00:00.32
# Mc/sec: 837.31
//
Query:       MMETSP1137-20121227|7973_1  [L=497]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (497 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        73  (0.0177962); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.15s 00:00:00.48 Elapsed: 00:00:00.39
# Mc/sec: 1682.01
//
Query:       MMETSP1137-20121227|7974_1  [L=594]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (594 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        84  (0.0204778); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.15s 00:00:00.53 Elapsed: 00:00:00.43
# Mc/sec: 1823.29
//
Query:       MMETSP1137-20121227|7975_1  [L=65]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (65 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        48  (0.0117016); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:00.23
# Mc/sec: 373.01
//
Query:       MMETSP1137-20121227|7976_1  [L=471]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00073   17.0   7.9     0.0061   13.9   0.5    2.3  2  TIGR02521 type_IV_pilW: type IV pilus biogenesis/stability protein PilW


Domain annotation for each model (and alignments):
>> TIGR02521  type_IV_pilW: type IV pilus biogenesis/stability protein PilW
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.5   1.5e-06    0.0061     139     203 ..     311     375 ..     304     399 .. 0.88
   2 !    6.6   0.9   0.00026       1.1      18      72 ..     412     466 ..     400     470 .. 0.81

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 1.5e-06
   TIGR02521 139 eNaglcalkagdtekaekyltralkidpkrpesllelaelklkkgqyaeAralleryqqtveqta 203
                  N++lcalk  d+  a+++ +  l ++p+ +++l+  a+    + ++a A  +l +  qt+ ++ 
  MMETSP1137-20121227|7976_1 311 LNVALCALKRSDFRLAREACKFVLSLEPNHQKALYRFAQACEAESDLAPAVTALRKMLQTASPQD 375
                 69**********************************************************95554 PP

  == domain 2    score: 6.6 bits;  conditional E-value: 0.00026
   TIGR02521  18 vkesskkkdrekaakirvqLaleYleqgdlekAkenlekAleldpkdadanlalA 72 
                 +  ++   ++e     r+ L leY ++++++kA e+ +kA +++++ a a ++ A
  MMETSP1137-20121227|7976_1 412 TAPAPAPVEKEDPLTERIRLVLEYEAREEARKAEEAAQKAAAAKTAMAAAASSAA 466
                 4555556666666779*************************99999988877665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (471 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       171  (0.041687); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.16s 00:00:00.51 Elapsed: 00:00:00.39
# Mc/sec: 1594.02
//
Query:       MMETSP1137-20121227|7977_1  [L=247]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (247 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        51  (0.012433); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.14s 00:00:00.35 Elapsed: 00:00:00.35
# Mc/sec: 931.47
//
Query:       MMETSP1137-20121227|7978_1  [L=866]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (866 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       655  (0.159678); expected 82.0 (0.02)
Passed bias filter:                      183  (0.0446124); expected 82.0 (0.02)
Passed Vit filter:                        34  (0.00828864); expected 4.1 (0.001)
Passed Fwd filter:                        14  (0.00341297); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.91u 0.19s 00:00:01.10 Elapsed: 00:00:01.05
# Mc/sec: 1088.60
//
Query:       MMETSP1137-20121227|7979_1  [L=209]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.4e-07   27.1   0.0    3.8e-06   24.8   0.0    2.0  1  TIGR00357 TIGR00357: methionine-R-sulfoxide reductase


Domain annotation for each model (and alignments):
>> TIGR00357  TIGR00357: methionine-R-sulfoxide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.8   0.0   9.3e-10   3.8e-06      34     122 ..     115     201 ..     105     208 .. 0.69

  Alignments for each domain:
  == domain 1    score: 24.8 bits;  conditional E-value: 9.3e-10
   TIGR00357  34 knkeeGiyvditsgeplf.....ssedkf...dsgcGWPsftkpiseeavkyekdeslgmirtevrskradahlGhvfddGPektGkryCinsaalk 122
                 ++++  +y d +sg+plf      s d f    +  GWPsf +   +e+v ++      ++  e  s    +hlGh +   P++ G+ryCin +++ 
  MMETSP1137-20121227|7979_1 115 DRNQPTVYYDSVSGKPLFvapigRSLDEFlaeSASHGWPSFRD---QEVVWENM---RVLQNGEAISV-DGTHLGHNL---PDRKGNRYCINLVSVA 201
                 566789************544444889995523357*****86...34554433...33444555544.368****77...7799*******99875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (209 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        99  (0.0241346); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.20u 0.14s 00:00:00.34 Elapsed: 00:00:00.34
# Mc/sec: 811.34
//
Query:       MMETSP1137-20121227|7981_1  [L=259]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (259 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        58  (0.0141394); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.14s 00:00:00.33 Elapsed: 00:00:00.31
# Mc/sec: 1102.75
//
Query:       MMETSP1137-20121227|7982_1  [L=215]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (215 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        39  (0.00950756); expected 82.0 (0.02)
Passed bias filter:                       36  (0.00877621); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.15s 00:00:00.35 Elapsed: 00:00:00.27
# Mc/sec: 1051.02
//
Query:       MMETSP1137-20121227|7983_1  [L=48]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (48 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        35  (0.00853242); expected 82.0 (0.02)
Passed bias filter:                       33  (0.00804486); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.16s 00:00:00.27 Elapsed: 00:00:00.34
# Mc/sec: 186.34
//
Query:       MMETSP1137-20121227|7984_1  [L=141]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (141 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        38  (0.00926377); expected 82.0 (0.02)
Passed bias filter:                       37  (0.00901999); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.13s 00:00:00.30 Elapsed: 00:00:00.63
# Mc/sec: 295.40
//
Query:       MMETSP1137-20121227|7985_1  [L=516]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (516 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       121  (0.0294978); expected 82.0 (0.02)
Passed bias filter:                      101  (0.0246221); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.15s 00:00:00.53 Elapsed: 00:00:00.82
# Mc/sec: 830.57
//
Query:       MMETSP1137-20121227|7986_1  [L=130]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (130 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        98  (0.0238908); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.16s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 612.81
//
Query:       MMETSP1137-20121227|7987_1  [L=272]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (272 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        52  (0.0126767); expected 82.0 (0.02)
Passed bias filter:                       40  (0.00975134); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.16s 00:00:00.35 Elapsed: 00:00:00.31
# Mc/sec: 1158.10
//
Query:       MMETSP1137-20121227|7988_1  [L=101]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        51  (0.012433); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.14s 00:00:00.28 Elapsed: 00:00:00.48
# Mc/sec: 277.73
//
Query:       MMETSP1137-20121227|7989_1  [L=458]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.6e-33  114.3   0.0    5.4e-15   53.2   0.0    4.7  4  TIGR01622 SF-CC1: splicing factor, CC1-like family
    1.2e-26   91.8   0.0    1.2e-26   91.8   0.0    2.4  2  TIGR01628 PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family
    7.9e-17   59.7   0.0    6.7e-06   23.7   0.0    3.4  3  TIGR01661 ELAV_HUD_SF: ELAV/HuD family splicing factor
    8.9e-15   52.0   0.0    4.1e-10   36.6   0.0    3.7  4  TIGR01642 U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor
    4.1e-14   50.8   0.0    1.2e-05   23.0   0.0    3.1  2  TIGR01659 sex-lethal: sex-lethal family splicing factor
      5e-07   26.7   0.1      5e-07   26.7   0.0    5.0  4  TIGR01645 half-pint: poly-U binding splicing factor, half-pint family


Domain annotation for each model (and alignments):
>> TIGR01622  SF-CC1: splicing factor, CC1-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?  -23.0  32.3         6   4.1e+03      14     118 ..      16     125 ..       2     148 .. 0.33
   2 !   53.2   0.0   7.9e-18   5.4e-15     197     300 ..     145     249 ..     141     262 .. 0.87
   3 !   29.7   0.0   1.1e-10   7.3e-08     215     297 ..     256     335 ..     245     342 .. 0.85
   4 !   43.4   0.0   7.2e-15   4.9e-12     122     197 ..     371     447 ..     349     454 .. 0.91

  Alignments for each domain:
  == domain 1    score: -23.0 bits;  conditional E-value: 6
   TIGR01622  14 sreadrdrerdksrersRdrsrdRersrskerdrdfdr..rdrdrdkyrdrerrsrkrresererereker..rredevrrkrkeredrrerrekeer.lkeelteeeRD 118
                   ea +++e+ +++e++ +r  + e +++k+   +      ++++ + ++++ ++ ++ ++e + e+      ++e+++++k k++++++   e e   + ee+ + ++D
  MMETSP1137-20121227|7989_1  16 AAEAMETKEKKEKKEKKEKRAAEPEEGKKKKPKVEEPVveAKKEKKEKKEKKANKEEKADKEEKAEEAAAVttEKEEKKEKKDKKDKKKKAEAEAEAApVVEEESKTKKD 125
                 44555555555555555555555555553311111111111111112222222221111111111111111112222222222222222222222222233333333333 PP

  == domain 2    score: 53.2 bits;  conditional E-value: 7.9e-18
   TIGR01622 197 AEKNraakaatelsg..dipnsiadlkLYvGnlhfnitEqeLrqiFepFGeielvqlqkDpetGrskGyGFiqFsdaeeakeAleklNGlelAGReikvglasDvt 300
                 AE   a+ka te++     p+  +  ++Y+Gnl   ++E++++  Fe  G+i +++  + ++tG+ +G  F++F  a+ a+ A +k NG ++ GR +kv la+  +
  MMETSP1137-20121227|7989_1 145 AEEAPAKKAKTETPAatAAPSGDSGARVYLGNLPWTVSEEQIKSTFEDCGSIGNIEWLMHSDTGKFRGAVFLEFDSADAAQSAVQK-NGADMDGRAMKVELAQPKK 249
                 77777777777777654677777889******************************************************999876.*************998655 PP

  == domain 3    score: 29.7 bits;  conditional E-value: 1.1e-10
   TIGR01622 215 nsiadlkLYvGnlhfnitEqeLrqiFepFGeielvqlqkDpetGrskGyGFiqFsdaeeakeAleklNGlelAGReikvglas 297
                 +  ++  +++Gnl  n+ E+++r  F+  Ge+  +++    + G+  G  F+ F   + ak+A  k NG +l GR++k+ +++
  MMETSP1137-20121227|7989_1 256 ENEPNESVFLGNLSWNVDEDSVRAAFKDCGELSRIKFLE--KDGQFMGKAFLDFDTVDSAKAAVAK-NGEDLLGRPMKINYSK 335
                 455778899*************************99654..34789*************9999876.************9965 PP

  == domain 4    score: 43.4 bits;  conditional E-value: 7.2e-15
   TIGR01622 122 vfvlqlalklreRdlkEFFskvg.kvrdvrlikDrnSrrSkGvaYvEFydvesvqlAlaltGqkllgvPvivqaseA 197
                  f+ +l+  ++e  +  FF++vg  v + r ++Dr+ +  kG+++v F + e v +A++ +G  l g+P+ +  +  
  MMETSP1137-20121227|7989_1 371 LFCGNLPYSIDEEKIAAFFKEVGaTVTNTRWLNDRETQEFKGIGFVSFETTEEVDKAVKKAGDYLDGRPIRIDYAGQ 447
                 69*********************99*********************************************9986644 PP

>> TIGR01628  PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?  -10.3  15.7         6   4.1e+03     416     532 ..      20     143 ..       1     162 [. 0.31
   2 !   91.8   0.0   1.8e-29   1.2e-26      90     365 ..     171     449 ..     161     453 .. 0.83

  Alignments for each domain:
  == domain 1    score: -10.3 bits;  conditional E-value: 6
   TIGR01628 416 qqlasqplnfkinqmmlstqnpskpeapnalaqlaqqrlqaqgr..rnlnnrnrnvlgnm.......nkkqqnaaskanqanvkaqpq....aqsknqmqqvvqdnnlpqkqatksnnkestltaaalas 532
                 + +++++ + + ++++  + +++k+++p+   ++++ +++++++  +++n+ +++ ++++       +      ++k+++++ k + +    a+ +++  +vv+++++ +k+++ +++k++++  a+ ++
  MMETSP1137-20121227|7989_1  20 METKEKKEKKEKKEKRAAEPEEGKKKKPKVEEPVVEAKKEKKEKkeKKANKEEKADKEEKaeeaaavT------TEKEEKKEKKDKKDkkkkAEAEAEAAPVVEEESKTKKDKKDKKEKKEKKREAETEA 143
                 22222222222233333333333444455444444444333322111111111111111111122221......11111111111111111122222445555555544443333333333222222222 PP

  == domain 2    score: 91.8 bits;  conditional E-value: 1.8e-29
   TIGR01628  90 NifvKnLdksidnkaLfdtFskfGnilsck.vatdeeGkSkgYgfvhfedeesAkeAieklNgvllndkevyvgkfikksere.atkekkftNlYvKnlddsvtedklrelFakfGeitSaivkkdeknrkrgfafvnyekaedAkkAveelngkkitlaatgkilyVgraq....kraeReaelkakfeelkqerkekaqgvNlYvkNlddtvddekLrelFeefG.eitSakvmld.ekekSkgFGFVcfssqeeAnkAvtelhgkilngkPLyvalAqrke 365
                  +++ nL+  + ++ ++ tF+  G+i  +  ++  ++Gk +g  f++f+  ++A++A++k Ng+ ++ ++++v+  + k+    + +++    +++ nl  +v+ed++r  F + Ge++ ++  + ++++  g af+ +++ ++Ak Av +  +  ++  ++ ki y  +       +    +   +  + ++  + + +  v l+  Nl  ++d+ek+   F+e+G ++t ++ + d e+++ kg GFV+f + ee  kAv++  g  l+g+P+ + +A +k 
  MMETSP1137-20121227|7989_1 171 RVYLGNLPWTVSEEQIKSTFEDCGSIGNIEwLMHSDTGKFRGAVFLEFDSADAAQSAVQK-NGADMDGRAMKVELAQPKKAPVaVEENEPNESVFLGNLSWNVDEDSVRAAFKDCGELSRIKFLE-KDGQFMGKAFLDFDTVDSAKAAVAKNGEDLLG--RPMKINYSKPKTggggDKWGNANSTGKPQRSYTPANPKPEGCVELFCGNLPYSIDEEKIAAFFKEVGaTVTNTRWLNDrETQEFKGIGFVSFETTEEVDKAVKK-AGDYLDGRPIRIDYAGQKK 449
                 58999************************84677899**********************9.***************99999863445555677************************98888765.567778*****************885555555..5666666666542221333333334444445555567778899************************66899999999889999******************98.699***********97665 PP

>> TIGR01661  ELAV_HUD_SF: ELAV/HuD family splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.0   5.5e-07   0.00038      80     153 ..     162     232 ..     152     250 .. 0.75
   2 !   12.9   0.0   1.9e-05     0.013      11      83 ..     268     337 ..     258     349 .. 0.86
   3 !   23.7   0.0   9.9e-09   6.7e-06      91     150 ..     370     430 ..     357     441 .. 0.91

  Alignments for each domain:
  == domain 1    score: 18.0 bits;  conditional E-value: 5.5e-07
   TIGR01661  80 arPssdsikganlyvsGlPktmtqkeleslfspfGkiitsrilsdnvtdlskGvGfirfdkreeadraikalnG 153
                 a Ps ds  ga +y+  lP t++ +++ s f++ G i     l+ + t+  +G  f+ fd  + a+ a+++ nG
  MMETSP1137-20121227|7989_1 162 AAPSGDS--GARVYLGNLPWTVSEEQIKSTFEDCGSIGNIEWLMHSDTGKFRGAVFLEFDSADAAQSAVQK-NG 232
                 6666665..78888888888888888888888888888888888888888888888888888888888764.44 PP

  == domain 2    score: 12.9 bits;  conditional E-value: 1.9e-05
   TIGR01661  11 lPqtmtqeeirslftsiGeiescklvrdkvtGqslGyGfvnyvreedaekavnslnGlrlqnktikvsyarPs 83 
                 l  ++ ++ +r+ f   Ge+  +k++     Gq +G  f+++    d+ ka  + nG  l  + +k+ y++P 
  MMETSP1137-20121227|7989_1 268 LSWNVDEDSVRAAFKDCGELSRIKFLE--KDGQFMGKAFLDFD-TVDSAKAAVAKNGEDLLGRPMKINYSKPK 337
                 6678899*****************996..47**********95.56666777788****************96 PP

  == domain 3    score: 23.7 bits;  conditional E-value: 9.9e-09
   TIGR01661  91 nlyvsGlPktmtqkeleslfspfGkiit.srilsdnvtdlskGvGfirfdkreeadraika 150
                 +l+   lP ++  +++ ++f++ G+ +t +r l d+ t+  kG+Gf+ f+  ee d+a+k+
  MMETSP1137-20121227|7989_1 370 ELFCGNLPYSIDEEKIAAFFKEVGATVTnTRWLNDRETQEFKGIGFVSFETTEEVDKAVKK 430
                 688999*******************998469****************************96 PP

>> TIGR01642  U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?  -13.0  23.9         6   4.1e+03       4     135 ..      24     154 ..       3     166 .. 0.32
   2 !   36.6   0.0     6e-13   4.1e-10     276     386 ..     149     258 ..     138     289 .. 0.85
   3 !    7.9   0.0    0.0003      0.21     294     364 ..     258     325 ..     248     334 .. 0.81
   4 !   21.4   0.0   2.5e-08   1.7e-05     223     356 ..     296     429 ..     274     450 .. 0.83

  Alignments for each domain:
  == domain 1    score: -13.0 bits;  conditional E-value: 6
   TIGR01642   4 ekdrerEksrerdrdkskeRsRkRsrdrsrdRdRdrrdrrrsrrkdsRdRdrrrydsrsissleeds.......rrrSRdrirrrsrssssesk.errrsrkrsssnekkkddkkrslwdvkppkyea.vtavqakasqva 135
                 ek+ ++Ek+ +r  +  +e ++k+ + ++   +          +k+++++++++ +++++ + ee+          +  +++++++++++++++ e +    + +  ++kkd+k ++ ++ k+ + e+ + a  a a++++
  MMETSP1137-20121227|7989_1  24 EKKEKKEKKEKRAAEP-EEGKKKKPKVEEPVVE---------AKKEKKEKKEKKANKEEKADKEEKAeeaaavtTEKEEKKEKKDKKDKKKKAEaEAEAAPVVEEESKTKKDKKDKKEKKEKKREAETeAAAEEAPAKKAK 154
                 2222222222222211.1111222221111111.........122222222222222222222222234444443333333334444433333202223333333444455555555555555444431222223333333 PP

  == domain 2    score: 36.6 bits;  conditional E-value: 6e-13
   TIGR01642 276 sdinlkaveklvnsktvldsedklyignLPldlkddqvkeLLesFGdLkaFnliKdlatGlsKGyaFceykdssvtdlAiaaLnGiklgdkkLnvkrAtvgakqatieken 386
                 +   +k+    +++  + ds  ++y+gnLP  + ++q+k   e+ G +   + +  ++tG+ +G  F e++ +  ++ A++  nG ++ ++ ++v  A   + +  +e+++
  MMETSP1137-20121227|7989_1 149 PAKKAKTETPAATAAPSGDSGARVYLGNLPWTVSEEQIKSTFEDCGSIGNIEWLMHSDTGKFRGAVFLEFDSADAAQSAVQK-NGADMDGRAMKVELAQPKKAPVAVEENE 258
                 455555555556777889****************************************************999999999975.***************9999999999887 PP

  == domain 3    score: 7.9 bits;  conditional E-value: 0.0003
   TIGR01642 294 dsedklyignLPldlkddqvkeLLesFGdLkaFnliKdlatGlsKGyaFceykdssvtdlAiaaLnGiklg 364
                 + ++ +++gnL  ++++d v+   ++ G+L   + +   ++G+  G aF +++    ++ A+a  nG +l 
  MMETSP1137-20121227|7989_1 258 EPNESVFLGNLSWNVDEDSVRAAFKDCGELSRIKFLE--KDGQFMGKAFLDFDTVDSAKAAVA-KNGEDLL 325
                 456789************************9988874..68999********98888887775.5776665 PP

  == domain 4    score: 21.4 bits;  conditional E-value: 2.5e-08
   TIGR01642 223 dkkF...aflEfrtveeatlalaldsiiyenvslkirRphdYiPvpeatpevsqknsdinlkavekl..vnsktvldsedklyignLPldlkddqvkeLLesFGd.LkaFnliKdlatGlsKGyaFceykdssvtdlAia 356
                 d +F   afl+f tv+ a  a+a +++ + + ++ki    +Y   p  t +   k  + n  +  +   + ++  +++   l+ gnLP+ ++++++    ++ G  +     + d++t   KG +F+ ++ +   d A++
  MMETSP1137-20121227|7989_1 296 DGQFmgkAFLDFDTVDSAKAAVAKNGEDLLGRPMKI----NYS-KP-KTGGGGDKWGNANSTGKPQRsyTPANPKPEGCVELFCGNLPYSIDEEKIAAFFKEVGAtVTNTRWLNDRETQEFKGIGFVSFETTEEVDKAVK 429
                 55554448***************************9....688.44.355566666666665554442366778899999************************73567899*******************999999985 PP

>> TIGR01659  sex-lethal: sex-lethal family splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.0   0.0   1.7e-08   1.2e-05     188     253 ..     166     229 ..     156     246 .. 0.90
   2 !   17.8   0.0   6.3e-07   0.00043     194     253 ..     369     429 ..     253     436 .. 0.72

  Alignments for each domain:
  == domain 1    score: 23.0 bits;  conditional E-value: 1.7e-08
   TIGR01659 188 gesikdtnlyvtnlprtitddqldtifgkygsivqknilrdkltgkprgvafvrfnkreeaqeais 253
                 g+s   + +y+ nlp t++++q+++ f   gsi + + l    tgk rg  f+ f+  + aq a+ 
  MMETSP1137-20121227|7989_1 166 GDS--GARVYLGNLPWTVSEEQIKSTFEDCGSIGNIEWLMHSDTGKFRGAVFLEFDSADAAQSAVQ 229
                 554..4679*****************************************************9985 PP

  == domain 2    score: 17.8 bits;  conditional E-value: 6.3e-07
   TIGR01659 194 tnlyvtnlprtitddqldtifgkygsivqk.nilrdkltgkprgvafvrfnkreeaqeais 253
                  +l+  nlp +i ++++ + f   g  v     l d+ t + +g+ fv f+  ee ++a+ 
  MMETSP1137-20121227|7989_1 369 VELFCGNLPYSIDEEKIAAFFKEVGATVTNtRWLNDRETQEFKGIGFVSFETTEEVDKAVK 429
                 36999********************98865268***********************99985 PP

>> TIGR01645  half-pint: poly-U binding splicing factor, half-pint family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?  -19.3  16.1         6   4.1e+03     447     471 ..      11      35 ..       2      83 .. 0.53
   2 ?  -20.1  19.2         6   4.1e+03     435     487 ..      67     119 ..      44     149 .. 0.58
   3 !   26.7   0.0   7.3e-10     5e-07     108     261 ..     171     319 ..     167     331 .. 0.83
   4 !    8.1   0.1    0.0003       0.2     110     259 ..     265     428 ..     260     442 .. 0.64

  Alignments for each domain:
  == domain 1    score: -19.3 bits;  conditional E-value: 6
   TIGR01645 447 akeaaaalllenkkkkkekeeeelq 471
                 +++ aaa ++e+k kk++ke++e  
  MMETSP1137-20121227|7989_1  11 KEKKAAAEAMETKEKKEKKEKKEKR 35 
                 3334455555555544444444322 PP

  == domain 2    score: -20.1 bits;  conditional E-value: 6
   TIGR01645 435 aasslalaaaakakeaaaalllenkkkkkekeeeelqpklveeeedeslaeqe 487
                  a     a++ +++e aaa  +e+  kk++k++++ ++k   e e + + e e
  MMETSP1137-20121227|7989_1  67 KANKEEKADKEEKAEEAAAVTTEKEEKKEKKDKKDKKKKAEAEAEAAPVVEEE 119
                 33444445555555666666666666666666666556554444433333333 PP

  == domain 3    score: 26.7 bits;  conditional E-value: 7.3e-10
   TIGR01645 108 rv.vGsisfelkedtlrrafdPfGPiksinmsWdpvtqkhkgfafve.evPeaallaleqmngallGGrnlkvgrPsnlpqaqpii.devqeeakkfnrivasvhpdlseedlksvfeafGeivkcklaraptlrkhkGfGflefenlqsqseaias 261
                 rv +G + + + e+ ++ +f+  G i  i+    + t+k +g  f+e +  +aa+ a  q nga + Gr +kv++ +  p+  p+  +e + +   f   +  +  ++ e+ +++ f   Ge+ + k+  +    +  G  fl+f+   s + a+a 
  MMETSP1137-20121227|7989_1 171 RVyLGNLPWTVSEEQIKSTFEDCGSIGNIEWLMHSDTGKFRGAVFLEfDSADAAQSAV-QKNGADMDGRAMKVELAQ--PKKAPVAvEENEPNESVF---LGNLSWNVDEDSVRAAFKDCGELSRIKFLEKDG--QFMGKAFLDFDTVDSAKAAVAK 319
                 78789999***************************************9999***9997.67************9766..444555403333333344...8999999*****************999877654..5566669*********999985 PP

  == domain 4    score: 8.1 bits;  conditional E-value: 0.0003
   TIGR01645 110 vGsisfelkedtlrrafdPfGPiksinmsWdpvtqkhkgfafve.evPeaallaleqmngallGGrnlkvg..............rPsnlpqaqpiidevqeeakkfnri.vasvhpdlseedlksvfeafGeiv.kcklaraptlrkhkGfGflefenlqsqseai 259
                 +G +s+++ ed +r af+  G +  i+       ++  g af++ +  ++a+ a    ng  l Gr +k++                +  ++ q+     + +      +    +   + ee + + f   G  v + +  ++  +++ kG Gf+ fe ++  ++a+
  MMETSP1137-20121227|7989_1 265 LGNLSWNVDEDSVRAAFKDCGELSRIKFLE--KDGQFMGKAFLDfDTVDSAKAAVA-KNGEDLLGRPMKINyskpktggggdkwgNANSTGKPQRSYTPANPKPEGCVELfCGNLPYSIDEEKIAAFFKEVGATVtNTRWLNDRETQEFKGIGFVSFETTEEVDKAV 428
                 7999******************99998654..456677778887777788887765.58888889999999886666666665553333344444333333333222222255555566666666666666643314455566666666666666666666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (458 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       621  (0.15139); expected 82.0 (0.02)
Passed bias filter:                      166  (0.0404681); expected 82.0 (0.02)
Passed Vit filter:                        75  (0.0182838); expected 4.1 (0.001)
Passed Fwd filter:                        43  (0.0104827); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 1.57u 0.17s 00:00:01.74 Elapsed: 00:00:01.43
# Mc/sec: 422.73
//
Query:       MMETSP1137-20121227|7991_1  [L=298]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (298 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        69  (0.0168211); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.15s 00:00:00.37 Elapsed: 00:00:00.36
# Mc/sec: 1092.58
//
Query:       MMETSP1137-20121227|7992_1  [L=92]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (92 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        63  (0.0153584); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.12s 00:00:00.28 Elapsed: 00:00:00.49
# Mc/sec: 247.82
//
Query:       MMETSP1137-20121227|7993_1  [L=290]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (290 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       124  (0.0302292); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.17s 00:00:00.38 Elapsed: 00:00:00.36
# Mc/sec: 1063.25
//
Query:       MMETSP1137-20121227|7994_1  [L=425]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (425 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        69  (0.0168211); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.15s 00:00:00.43 Elapsed: 00:00:00.43
# Mc/sec: 1304.54
//
Query:       MMETSP1137-20121227|7995_1  [L=126]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.5e-05   22.4   6.3    7.2e-05   20.9   4.3    1.7  1  TIGR03685 L21P_arch: 50S ribosomal protein L12P
  ------ inclusion threshold ------
        0.2    8.8   8.3       0.25    8.5   5.7    1.2  1  TIGR02783 TrbL_P: P-type conjugative transfer protein TrbL


Domain annotation for each model (and alignments):
>> TIGR03685  L21P_arch: 50S ribosomal protein L12P
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   4.3   3.5e-08   7.2e-05       4      95 ..      23     119 ..      20     124 .. 0.59

  Alignments for each domain:
  == domain 1    score: 20.9 bits;  conditional E-value: 3.5e-08
   TIGR03685   4 iyaaLllheagkeineenlkkvleaaGvevdearvKalvaaL.edvdieeaiekaa.aapvaaaaaa.aaa....aeaaeeekeeeeeeeeekeeeeee 95 
                 +yaaL+ h+ g e +  n+ ++l+aa +e + a   +l a L ++ +i +++       pv+aa++a aa+    a a  ++ +++ + e e eeeeee
  MMETSP1137-20121227|7995_1  23 VYAALICHDEGIEASATNIAAILKAANIETE-AYWPTLFAKLvKGKNIGDMLTAGGgGGPVVAAGGAvAAPtggaAPAGGDAPAKA-APEPEPEEEEEE 119
                 9***************************985.6777777776499******98754123333333331222000011222222222.222222222222 PP

>> TIGR02783  TrbL_P: P-type conjugative transfer protein TrbL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   5.7   0.00012      0.25     237     292 ..      47     107 ..      20     110 .. 0.66

  Alignments for each domain:
  == domain 1    score: 8.5 bits;  conditional E-value: 0.00012
   TIGR02783 237 vvilllvkkipeiaaslvsgasv...lgaggava.aaaavagv.aaaggaalaaGalsaaa 292
                 ++ +    + p+++a lv+g+     l agg  + ++aa+ +v a +ggaa+a G   a+a
  MMETSP1137-20121227|7995_1  47 AANIETEAYWPTLFAKLVKGKNIgdmLTAGGGGGpVVAAGGAVaAPTGGAAPAGGDAPAKA 107
                 4444556688***********9999866665554355555555155777777666655555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (126 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       117  (0.0285227); expected 82.0 (0.02)
Passed bias filter:                      103  (0.0251097); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.17u 0.15s 00:00:00.32 Elapsed: 00:00:00.30
# Mc/sec: 554.35
//
Query:       MMETSP1137-20121227|7996_1  [L=522]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (522 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        74  (0.01804); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.13s 00:00:00.46 Elapsed: 00:00:00.52
# Mc/sec: 1324.97
//
Query:       MMETSP1137-20121227|7998_1  [L=458]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        5.8    2.9   6.4         10    2.1   4.5    1.3  1  TIGR04154 archaeo_STT3: oligosaccharyl transferase, archaeosortase system-associated


Domain annotation for each model (and alignments):
>> TIGR04154  archaeo_STT3: oligosaccharyl transferase, archaeosortase system-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   4.5    0.0025        10     661     734 ..      39     112 ..      24     123 .. 0.77

  Alignments for each domain:
  == domain 1    score: 2.1 bits;  conditional E-value: 0.0025
   TIGR04154 661 lveveeeeaseqslkvetkeeeenaseaeaaaeadnaasaaeafaeeeeealehyRlvhesstsatseeeskqk 734
                  ++ + +++  q+++v++++++++++ ++ ++++  +++++++   e  ++l  +R v    +s++s+ +++++
  MMETSP1137-20121227|7998_1  39 QQQSNLQTQLRQQQQVQQQQQQQQLKXQQLKQQQLLQQQQEQQLRRERLPQLPPLRAVSAPAPSEASTVSTQRS 112
                 334444556667778888888888888888899999999999988888999*999*999999999988887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (458 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       492  (0.119941); expected 82.0 (0.02)
Passed bias filter:                      205  (0.0499756); expected 82.0 (0.02)
Passed Vit filter:                        37  (0.00901999); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.18s 00:00:00.65 Elapsed: 00:00:01.32
# Mc/sec: 457.96
//
Query:       MMETSP1137-20121227|7999_1  [L=221]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (221 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        55  (0.0134081); expected 82.0 (0.02)
Passed bias filter:                       44  (0.0107265); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.15s 00:00:00.32 Elapsed: 00:00:00.35
# Mc/sec: 833.42
//
Query:       MMETSP1137-20121227|8000_1  [L=208]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (208 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       103  (0.0251097); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.11s 00:00:00.30 Elapsed: 00:00:00.86
# Mc/sec: 319.23
//
Query:       MMETSP1137-20121227|8001_1  [L=239]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.5e-06   23.8   4.7    0.00018   18.6   3.3    2.1  1  TIGR03921 T7SS_mycosin: type VII secretion-associated serine protease mycosin


Domain annotation for each model (and alignments):
>> TIGR03921  T7SS_mycosin: type VII secretion-associated serine protease mycosin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   3.3   4.4e-08   0.00018       2      51 ..     128     187 ..     127     220 .. 0.65

  Alignments for each domain:
  == domain 1    score: 18.6 bits;  conditional E-value: 4.4e-08
   TIGR03921   2 eleeawklstGa.gvtVAViDtGvd.rhPrLpgev..aGgDlve.....sgdged.dcdg 51 
                  +eeaw +s G   +++A+iD+Gvd +hP+++++   + g++ +     +g+g   dc+g
  MMETSP1137-20121227|8001_1 128 GMEEAWAVSAGDpNIVIAIIDSGVDvNHPEMRSNAwlNTGEVCGngaddDGNGYVdDCSG 187
                 5799*******846899**************99877766666664544444444445542 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (239 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        67  (0.0163335); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.23u 0.15s 00:00:00.38 Elapsed: 00:00:00.42
# Mc/sec: 751.08
//
Query:       MMETSP1137-20121227|8002_1  [L=721]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.8e-20   70.3   0.1    2.4e-20   69.9   0.0    1.1  1  TIGR03903 TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
    9.9e-06   23.0   0.0    1.7e-05   22.2   0.0    1.3  1  TIGR03724 arch_bud32: Kae1-associated kinase Bud32


Domain annotation for each model (and alignments):
>> TIGR03903  TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.9   0.0   1.2e-23   2.4e-20      17     194 ..     182     361 ..     164     421 .. 0.76

  Alignments for each domain:
  == domain 1    score: 69.9 bits;  conditional E-value: 1.2e-23
   TIGR03903  17 eeerlvaRFrReialCarLshPnivaLlDs.GeaedgllFavFeyveGrtl.revLaadGaLpaaetgrLmlqvLDalaaahdaGvvhRDLkPqnimvsaadveshakvLDFGigaLlpgvedadeatltrttevlGsPaYaaPeqL......Rgepvt..aksDlYaWGLivleCLtGkrvvqGasv 194
                 +  ++ a  r e +l   L hPniv++ +s  ea +  +  v e+  G  l  evL +   L  +  +r+ +  L a+   h++GvvhRD+kP+n+m    d +s+ k++DFG++  +              te +G+ +Y aPe L      R  +    +  Dl++ G  +   L G+r  +G+  
  MMETSP1137-20121227|8002_1 182 NGYKRLAELRQEFELQRSLDHPNIVRVYESfEEASPPCVRVVLELCTGSALiDEVLRTPDGLDEQRVARVAACLLSAIFYMHQRGVVHRDIKPENVMFESCDADSEPKLIDFGLACRVLK--------CEPMTERVGTLSYMAPELLvsgthrRAAAAAydSSVDLWSLGATLYTLLCGRRPFEGDGH 361
                 46789999********************994468999***********9973679**********************************************************9875544........455899***********9854444222222211345888888888888888888888644 PP

>> TIGR03724  arch_bud32: Kae1-associated kinase Bud32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.2   0.0   8.3e-09   1.7e-05      96     141 ..     252     301 ..     192     319 .. 0.79

  Alignments for each domain:
  == domain 1    score: 22.2 bits;  conditional E-value: 8.3e-09
   TIGR03724  96 lkevGelvgklHkagivhgDlttsNiivk....ddklyliDfGLgkkske 141
                 +  +  ++  +H+ g+vh D+ ++N++++    d++  liDfGL+ +  +
  MMETSP1137-20121227|8002_1 252 AACLLSAIFYMHQRGVVHRDIKPENVMFEscdaDSEPKLIDFGLACRVLK 301
                 4444467889******************767778999*******976555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (721 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        65  (0.0158459); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.14s 00:00:00.59 Elapsed: 00:00:00.74
# Mc/sec: 1286.00
//
Query:       MMETSP1137-20121227|8004_1  [L=541]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00061   16.3   0.0    0.00096   15.6   0.0    1.2  1  TIGR00562 proto_IX_ox: protoporphyrinogen oxidase
     0.0036   14.5   0.1       0.01   13.0   0.0    1.7  2  TIGR03467 HpnE: squalene-associated FAD-dependent desaturase


Domain annotation for each model (and alignments):
>> TIGR00562  proto_IX_ox: protoporphyrinogen oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   4.7e-07   0.00096       6      60 ..      47     113 ..      43     125 .. 0.72

  Alignments for each domain:
  == domain 1    score: 15.6 bits;  conditional E-value: 4.7e-07
   TIGR00562   6 vvvGgGisGLciayalekerp.......dvelvlvEakdRvGGkiyTrk.esG....yllEkGprtl 60 
                 vvvG+G sG+  a++ +           +++l ++Ea++R+GG+ y +   +     ++l++G+  +
  MMETSP1137-20121227|8004_1  47 VVVGAGWSGIYYAWRRAMSFSeegykgpAPQLCVFEASERIGGRTYSVRdLKLenveFVLDVGAYRF 113
                 89********9998754433333667779***************99543022122347777776665 PP

>> TIGR03467  HpnE: squalene-associated FAD-dependent desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   0.0     5e-06      0.01       2      46 ..      47     100 ..      46     111 .. 0.76
   2 ?   -1.7   0.0      0.14   2.9e+02     213     249 ..     178     215 ..     161     255 .. 0.63

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 5e-06
   TIGR03467   2 vvvGgGlAGLaA....AveLaraG.....vrvtllEarrqlGGRarsfedgslg 46 
                 vvvG+G++G+      A+  +++G      +  ++Ea++++GGR  s++d +l+
  MMETSP1137-20121227|8004_1  47 VVVGAGWSGIYYawrrAMSFSEEGykgpaPQLCVFEASERIGGRTYSVRDLKLE 100
                 79********87112245566777777766789***************997776 PP

  == domain 2    score: -1.7 bits;  conditional E-value: 0.14
   TIGR03467 213 paarylesrggevrlgtrvreleas.aggiralveaae 249
                  +++ +++ g+ v++g+++ +++as a+g++++  +++
  MMETSP1137-20121227|8004_1 178 RMIAEMKALGVVVKTGAELVSINASsAHGVELTFSSSG 215
                 44555677788888888888888751455555444333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (541 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        71  (0.0173086); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.37u 0.17s 00:00:00.54 Elapsed: 00:00:00.56
# Mc/sec: 1252.74
//
Query:       MMETSP1137-20121227|8005_1  [L=311]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (311 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       167  (0.0407118); expected 82.0 (0.02)
Passed bias filter:                      125  (0.0304729); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.15s 00:00:00.41 Elapsed: 00:00:00.51
# Mc/sec: 804.87
//
Query:       MMETSP1137-20121227|8006_1  [L=357]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.3e-87  290.4   0.1    2.8e-87  290.2   0.0    1.0  1  TIGR00500 met_pdase_I: methionine aminopeptidase, type I
    4.8e-29   99.7   0.3    1.6e-26   91.4   0.2    2.0  2  TIGR00501 met_pdase_II: methionine aminopeptidase, type II
    3.3e-13   46.9   0.1    2.6e-11   40.7   0.1    2.0  2  TIGR00495 crvDNA_42K: DNA-binding protein, 42 kDa
    0.00017   18.6   0.1    0.00025   18.1   0.1    1.1  1  TIGR02993 ectoine_eutD: ectoine utilization protein EutD


Domain annotation for each model (and alignments):
>> TIGR00500  met_pdase_I: methionine aminopeptidase, type I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  290.2   0.0   2.7e-90   2.8e-87       1     245 [.     101     344 ..     101     346 .. 0.98

  Alignments for each domain:
  == domain 1    score: 290.2 bits;  conditional E-value: 2.7e-90
   TIGR00500   1 islkskeeieklrkagelvaevlellerevkpGvstkeldkiakdfiekkgAksafkgykgfpgsvCiSvNevviHGipdkkvlkdgDivniDvgveldGyygDtaktllvgkvseeaeklleatkealkkaieeikvgkrikeiskaiektaeekgfsvvkeytGHGiGrklHeepeilnyakketnvrlkeGmviaiEPmvnekteeiviaadgWtvltkdkklsaqfEhtvvvtengveiLt 245
                 i++k++++ie++r ag++++evl+l++r v  Gv+t+++d++++d+++k+g ++++++y+gfp+s C+SvNev++HGipd++ lkdgDivniDv+ ++ Gy+gD ++++lvg+v+e  ++l+++t++a + ai+ + +gk  + i++ ie++++ +g+s+v +++GHGiG+ +H+ p+il+y ++ ++ +++ G v++iEPm+ne+  + v++ dgWt +tkd+k saqfEht++vt +gve Lt
  MMETSP1137-20121227|8006_1 101 IEVKNEKDIEGMRVAGRVAREVLDLAHRAVAVGVTTDAIDQLVHDETIKRGGYPSPLNYHGFPKSCCTSVNEVICHGIPDSYKLKDGDIVNIDVTCYVGGYHGDCSQMVLVGDVDEAGKQLVKVTHDAWQAAIAYCAPGKPYNGIGAVIEDYIKPYGYSTVAHFCGHGIGKVFHTTPNILHYRNR-EPGKMQVGHVFTIEPMINEGVVDHVEWRDGWTATTKDGKRSAQFEHTLLVTPDGVEPLT 344
                 789***********************************************************************************************************************************************************************************876.5789****************************************************998 PP

>> TIGR00501  met_pdase_II: methionine aminopeptidase, type II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.4   0.2   1.5e-29   1.6e-26       5     195 ..     109     306 ..     104     317 .. 0.91
   2 !    6.5   0.0    0.0011       1.2     270     291 ..     320     341 ..     309     345 .. 0.86

  Alignments for each domain:
  == domain 1    score: 91.4 bits;  conditional E-value: 1.5e-29
   TIGR00501   5 aeklikaGkilkkvrreaaekivpGlkllevaefvenrirelGaeP......afP..anisinevaahftpkagdetvlkdedvvkldlGahvdGyiadtaitvdlddq...ykellkaakdaletaikeiradvevgeiGkvieeviesygvkPisnLtGhslaryrlhagksipnvkerdttkleeGevlaiepfatdGv 195
                 +e +  aG++++ v + a   ++ G+    + ++v + +++ G+ P      +fP  +  s+nev  h  p   d  +lkd+d+v +d+   v Gy  d +  v ++d+    k+l+k ++da ++ai    ++     iG vie+ i+ yg+  +  ++Gh++ +   h+ + i  +++r+  k+++G+v+ iep+  +Gv
  MMETSP1137-20121227|8006_1 109 IEGMRVAGRVAREVLDLAHRAVAVGVTTDAIDQLVHDETIKRGGYPsplnyhGFPksCCTSVNEVICHGIP---DSYKLKDGDIVNIDVTCYVGGYHGDCSQMVLVGDVdeaGKQLVKVTHDAWQAAIAYCAPGKPYNGIGAVIEDYIKPYGYSTVAHFCGHGIGK-VFHTTPNILHYRNREPGKMQVGHVFTIEPMINEGV 306
                 5556668999***********************************9999999**977889********887...889********************99887775555444499**************************************************98.68****************************99997 PP

  == domain 2    score: 6.5 bits;  conditional E-value: 0.0011
   TIGR00501 270 eksgslvaqfehtilveedgae 291
                  k+g   aqfeht+lv+ dg+e
  MMETSP1137-20121227|8006_1 320 TKDGKRSAQFEHTLLVTPDGVE 341
                 5678889***********9987 PP

>> TIGR00495  crvDNA_42K: DNA-binding protein, 42 kDa
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.7   0.1   2.5e-14   2.6e-11      27     188 ..     112     268 ..      97     290 .. 0.86
   2 !    4.2   0.0    0.0031       3.2     309     334 ..     320     345 ..     304     353 .. 0.89

  Alignments for each domain:
  == domain 1    score: 40.7 bits;  conditional E-value: 2.5e-14
   TIGR00495  27 geiankvlkkvvekcksgakvvdiCekGdelikeetakvykk.kkelekGiafPtavsvnnvvghfsPlksdelvlkeGdvvkidlGvhidGfialvahtivigaeesvtGrkadviaaaslaleaalrlvkPGkkntevteviekvaasydcksveGvlshq 188
                   +a +v ++v++ ++  + v    +  d+l+++et k         ++G     + svn+v++h  P   d++ lk+Gd+v id+ +++ G+    ++ +++g + + +G+    ++ ++ a +aa+    PGk  + +  vie   + y+  +v+    h 
  MMETSP1137-20121227|8006_1 112 MRVAGRVAREVLDLAHRAVAVGVTTDAIDQLVHDETIKRGGYpSPLNYHGFPKSCCTSVNEVICHGIP---DSYKLKDGDIVNIDVTCYVGGYHGDCSQMVLVG-DVDEAGK--QLVKVTHDAWQAAIAYCAPGKPYNGIGAVIEDYIKPYGYSTVAHFCGHG 268
                 4678888888999999888888888999999999998864442355578988889**********999...99**************************99998.5555666..58999*********************************99999887775 PP

  == domain 2    score: 4.2 bits;  conditional E-value: 0.0031
   TIGR00495 309 dkeGeivaqfkftvlllpnGsirlts 334
                  k+G+  aqf+ t+l++p+G + lt+
  MMETSP1137-20121227|8006_1 320 TKDGKRSAQFEHTLLVTPDGVEPLTG 345
                 599*****************998876 PP

>> TIGR02993  ectoine_eutD: ectoine utilization protein EutD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.1   2.4e-07   0.00025     152     323 ..      97     270 ..      84     282 .. 0.85

  Alignments for each domain:
  == domain 1    score: 18.1 bits;  conditional E-value: 2.4e-07
   TIGR02993 152 vnwqravksetelkymrkaakivekmhqrilervepgmrkcdlvadiydagirgvdg..fggdypaivpllpsgadasaphltwddkplkvgegtffeiagvykryhvplsrtvflgkptqafldaekavlegleaglevakpgntcediakaffavlkkygiek.dsrtgypig 323
                 + wq  vk e++++ mr+a+++  ++ +     v +g+    +   ++d  i+   g     +y        + ++    h   d   lk g+   ++++  +  yh   s+ v +g   +a  +  k + +  +a ++ + pg+  + i   + + +k yg       +g+ ig
  MMETSP1137-20121227|8006_1  97 LPWQIEVKNEKDIEGMRVAGRVAREVLDLAHRAVAVGVTTDAIDQLVHDETIKR-GGypSPLNYHGFPKSCCTSVNEVICHGIPDSYKLKDGDIVNIDVTCYVGGYHGDCSQMVLVGDVDEAGKQLVKVTHDAWQAAIAYCAPGKPYNGIGAVIEDYIKPYGYSTvAHFCGHGIG 270
                 57***********************************98766666666666653.4401445788888888899999999********************999******************************************999999999999999997651345777777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (357 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        95  (0.0231594); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.31u 0.17s 00:00:00.48 Elapsed: 00:00:00.54
# Mc/sec: 872.59
//
Query:       MMETSP1137-20121227|8007_1  [L=121]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (121 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       219  (0.0533886); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.16s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 550.71
//
Query:       MMETSP1137-20121227|8009_1  [L=230]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (230 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       112  (0.0273038); expected 82.0 (0.02)
Passed bias filter:                       96  (0.0234032); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.18s 00:00:00.38 Elapsed: 00:00:00.48
# Mc/sec: 632.45
//
Query:       MMETSP1137-20121227|8010_1  [L=395]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   7.3e-124  411.4  11.1   8.2e-124  411.2   7.7    1.0  1  TIGR01930 AcCoA-C-Actrans: acetyl-CoA C-acetyltransferase
   1.5e-103  344.8  12.3   1.7e-103  344.5   8.5    1.0  1  TIGR02430 pcaF: 3-oxoadipyl-CoA thiolase
    1.2e-79  265.8  11.0    2.4e-79  264.9   7.6    1.4  1  TIGR02445 fadA: acetyl-CoA C-acyltransferase FadA
    3.2e-48  162.7  13.7    5.7e-46  155.3   9.5    2.6  1  TIGR02446 FadI: acetyl-CoA C-acyltransferase FadI
    2.9e-06   24.1   9.6     0.0013   15.3   4.2    2.2  2  TIGR03150 fabF: beta-ketoacyl-acyl-carrier-protein synthase II


Domain annotation for each model (and alignments):
>> TIGR01930  AcCoA-C-Actrans: acetyl-CoA C-acetyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  411.2   7.7    1e-126  8.2e-124       2     385 .]       9     392 ..       8     392 .. 0.96

  Alignments for each domain:
  == domain 1    score: 411.2 bits;  conditional E-value: 1e-126
   TIGR01930   2 vdavRtpigklggslkelsaedLlaavikelleragldpekidevilGnvlqageq.aniaReaalaaglpesvpaltvnrvCaSglqAvalaaqkikaGeadvvvaGGvEsmSrvpillkaslrreslklgkakledqllkdl...vktklsmgetAenlakkygisReeqDeyalrShqkaakAieegkfkdeivpvevkgk..kkvvskDegirpnttlekLakLkpafkekkgstvtAgNssqlnDGAaalllmseevakelgltplarivsaavagvdpeemglgpvpAiekaLkkaglsisdidlvEinEAFAaqvlavekelgsldlekvNvnGGAiAlGHPlGasGarivltllkeLkergkkyGlatlCvggGqGaAvile 385
                 v+a Rt++g++ggslk++s+ +L+a++ +++l+   l +e i+ v +Gnvl+++++   +aR+aal+ag++ +vpalt+nr+C+Sg+q+v ++aq+i  Gea+v +aGG+E+mS++p+++  +  r++ +lg+  +   +l  +   ++++ +mg+tAenla++ygisR   De+al+S++k ++A+++g f +ei p+ev+gk   +++++De++r  tt+ekL++L + fk+ +g +vtAg++s++ DGAaa++++se+++ ++gl+pla++v++a +gv+p++mg+gpvpAi++aL++ g+++++++ vEinEAFA qvla++k+l  ld +k+Nv+GGAiAlGHPlGasGari+++l++++++ ++k ++ ++C+ggGqG+A++l+
  MMETSP1137-20121227|8010_1   9 VAAKRTAFGAFGGSLKNVSSTELSAHASRAALAD--LPAELIETVCFGNVLPTAADaTYLARHAALKAGVRIEVPALTLNRLCGSGFQSVVTVAQEILLGEAQVGLAGGAENMSQSPMSVYGQDVRWGTRLGQDMKLVDTLWAGltdSYAGCAMGMTAENLAAEYGISRLASDEFALSSQEKWSAAHAAGAFRSEIAPIEVRGKkgMVSFETDEHPR-ATTIEKLGTLATTFKK-DG-IVTAGSASGICDGAAAIVVASEAAVTAHGLKPLAELVGWASVGVEPSVMGIGPVPAIQAALERSGMTLDEMERVEINEAFAPQVLACAKALS-LDMSKLNVKGGAIALGHPLGASGARITAHLAHAIANGEVKTAVGAACIGGGQGIALVLK 392
                 89******************************97..899****************999*****************************************************************999999998765555444444799999*****************************************************9999999*******.899***********95.9*.7*******************************************************************************************.89******************************************************985 PP

>> TIGR02430  pcaF: 3-oxoadipyl-CoA thiolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  344.5   8.5  2.1e-106  1.7e-103       3     399 ..       6     393 ..       4     394 .. 0.94

  Alignments for each domain:
  == domain 1    score: 344.5 bits;  conditional E-value: 2.1e-106
   TIGR02430   3 vyivdairtpiGrygGslssvraddlaavplkallarnpsldaaaiddvilGcanqaGednrnvarmaallaGlpvsvpgttvnrlcgsgldalglaaraikaGeadlviaGGvesmsrapfvlGkad....safsrsakledttiGwrfvnpklkalyGvdsmpetaenvaeefgvsredqdafalrsqqrtaaaqakGffaeeivpveikqkkGeetvvdkdehlraettlealaklkavvredgtvtaGnasGvndGaaalllaseeavkrhgltprarilaaasaGveprvmGlgpvpavkkllaraglsledldvielneafaaqalavlrelgladddarvnpnGGaialGhplGasGarlvltalkqleksggryalatlciGvGqGialvier 399
                  ++v a rt +G +gGsl +v + +l+a   +a la   +l a+ i+ v++G    +  d   +ar aal aG+  +vp+ t+nrlcgsg++++ ++a+ i  Gea++ +aGG e ms++p  +   d    + ++++ kl dt   w      l + y   +m+ taen+a e+g+sr   d+fal sq++++aa+a+G f +ei+p+e+++kkG ++ +++deh+r  tt+e+l  l + +++dg vtaG asG+ dGaaa+++ase av +hgl+p a +++ as+Gvep vmG+gpvpa++ +l+r g++l++++ +e+neafa q la+ ++l+l  d +++n  GGaialGhplGasGar+ + + + +++ + + a+ + ciG GqGialv++ 
  MMETSP1137-20121227|8010_1   6 LFLVAAKRTAFGAFGGSLKNVSSTELSAHASRAALA---DLPAELIETVCFGNVLPTAADATYLARHAALKAGVRIEVPALTLNRLCGSGFQSVVTVAQEILLGEAQVGLAGGAENMSQSPMSVYGQDvrwgTRLGQDMKLVDTL--W----AGLTDSYAGCAMGMTAENLAAEYGISRLASDEFALSSQEKWSAAHAAGAFRSEIAPIEVRGKKG-MVSFETDEHPR-ATTIEKLGTLATTFKKDGIVTAGSASGICDGAAAIVVASEAAVTAHGLKPLAELVGWASVGVEPSVMGIGPVPAIQAALERSGMTLDEMERVEINEAFAPQVLACAKALSL--DMSKLNVKGGAIALGHPLGASGARITAHLAHAIANGEVKTAVGAACIGGGQGIALVLKA 393
                 69999***********************99998875...78899*****************************************************************************976655511114455566677764..5....4688999999******************************************************.899********.89*********************************************************************************************************9988..899*****************************************************975 PP

>> TIGR02445  fadA: acetyl-CoA C-acyltransferase FadA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  264.9   7.6   2.9e-82   2.4e-79       4     383 ..       8     392 ..       5     394 .. 0.91

  Alignments for each domain:
  == domain 1    score: 264.9 bits;  conditional E-value: 2.9e-82
   TIGR02445   4 ivdalrtpmgrskggafrntraedlsahllkkllarnpkveaaevediywgcvqqtleqgfniarnaallaevphevaavtvnrlcgssmqalhdaaraimtgdaevcliggvehmghvsms.hgvdfhpg..lskhv............akaagmmgltaemlgklhgisreqqdafaarsharahaatlegkfkneiiptegydadgvlkvldydevirpettvealaalrpafdpkngtvtagtssalsdgasamlvmseeraqelgvkprarirsmavagvdpsimgygpvpatkkalkraglsisdidvlelneafaaqalpvlkdlglldkldekvnlnggaialghplgcsgaristtllnlmerkdakfglatmciglgqgiatvfe 383
                 +v a rt +g   gg  +n+ + +lsah  ++ la    + a  +e + +g v  t  +   +ar+aal a+v +ev+a t+nrlcgs +q++ + a+ i+ g+a+v l gg e m   +ms +g d++ g  l +++            + a   mg+tae l+  +gisr   d+fa+ s ++  aa   g+f+ ei p+e   ++g++  ++ de  r  tt+e l +l  +f+ k+g+vtag++s ++dga+a++v se      g+kp+a + + a +gv+ps+mg gpvpa + al r+g+++++++ +e+neafa q+l ++k l l d +  k+n++ggaialghplg sgari++ l   + + ++k  + + cig gqgia v++
  MMETSP1137-20121227|8010_1   8 LVAAKRTAFGA-FGGSLKNVSSTELSAHASRAALAD---LPAELIETVCFGNVLPTAADATYLARHAALKAGVRIEVPALTLNRLCGSGFQSVVTVAQEILLGEAQVGLAGGAENMSQSPMSvYGQDVRWGtrLGQDMklvdtlwagltdSYAGCAMGMTAENLAAEYGISRLASDEFALSSQEKWSAAHAAGAFRSEIAPIEVRGKKGMV-SFETDEHPRA-TTIEKLGTLATTFK-KDGIVTAGSASGICDGAAAIVVASEAAVTAHGLKPLAELVGWASVGVEPSVMGIGPVPAIQAALERSGMTLDEMERVEINEAFAPQVLACAKALSL-D-M-SKLNVKGGAIALGHPLGASGARITAHLAHAIANGEVKTAVGAACIGGGQGIALVLK 392
                 68889999995.6999***************99985...667889****************************************************************************75687776542232222111111211111346668*****************************************************86.79****9885.99***********7.79*******************************************************************************************987.3.3.69**************************************************9986 PP

>> TIGR02446  FadI: acetyl-CoA C-acyltransferase FadI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  155.3   9.5   6.9e-49   5.7e-46       8     428 ..       5     392 ..       2     394 .. 0.91

  Alignments for each domain:
  == domain 1    score: 155.3 bits;  conditional E-value: 6.9e-49
   TIGR02446   8 riaivaglrtpfarqatafhgipavdlgkmvvsellarseidaklieqlvfgqvvqm.peapniareivlgtgmnvhtdaysvtracatsfqsavnvaesimagaieigiaggadsssvlpigvskklaralvdlnkartlgqklkvlsrlglkdllpvppavaeystglsmgqtaeqmaktygitraeqdalahrshtlaaqawadgklkeevmtafvepykkfia.ednnirenssladyaklrpafdrkygsvtaanstpltdgaaavilmsegrakelgleilgyirsyaftaidve.qdmllgpsyatplalkraglelsdltlidmheafaaqtlanvkllasekfaeeklgrakaigeidmskfnvlggsiayghpfaatgarlitqtlrelkrrggglglatacaagglgaamile 428
                 r+ +va  rt f     +++++++ +l           ++++a+lie + fg+v+    +a  +ar   l +g+ ++  a ++ r c + fqs+v va+ i+ g+ ++g+agga+  s  p+ v  +      d+     lgq +k++  l           +++  +g +mg tae++a  ygi+r   d +a  s ++ + a a g ++ e+    v   k ++  e ++  + +++++   l  +f +k g vta  ++ + dgaaa+++ se+   + gl++l  + ++a    +ve + m +gp  a   al+r+g++l+++  +++ eafa q la  k l                  +dmsk+nv gg+ia ghp+ a+gar+ +   + +      +++ +ac  gg g a++l+
  MMETSP1137-20121227|8010_1   5 RLFLVAAKRTAFGAFGGSLKNVSSTELSAHASRAA--LADLPAELIETVCFGNVLPTaADATYLARHAALKAGVRIEVPALTLNRLCGSGFQSVVTVAQEILLGEAQVGLAGGAENMSQSPMSVYGQ------DVRWGTRLGQDMKLVDTLW--------AGLTDSYAGCAMGMTAENLAAEYGISRLASDEFALSSQEKWSAAHAAGAFRSEIAPIEVRGKKGMVSfETDEHPRATTIEKLGTLATTF-KKDGIVTAGSASGICDGAAAIVVASEAAVTAHGLKPLAELVGWASV--GVEpSVMGIGPVPAIQAALERSGMTLDEMERVEINEAFAPQVLACAKAL-----------------SLDMSKLNVKGGAIALGHPLGASGARITAHLAHAIANGEVKTAVGAACIGGGQGIALVLK 392
                 7889***********************98876655..579**************965167999***********************************************************99865......8888999*****9998774........35566778*****************************************************999986233445567899*******999.678*************************************999865..55526799**********************************9976544.................48**********************************9999******************97 PP

>> TIGR03150  fabF: beta-ketoacyl-acyl-carrier-protein synthase II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.9   0.0   6.8e-05     0.056     151     197 ..      79     126 ..      62     131 .. 0.77
   2 !   15.3   4.2   1.5e-06    0.0013     229     365 ..     251     377 ..     238     392 .. 0.91

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 6.8e-05
   TIGR03150 151 kgpnlavvtACatgthaigeaarlikegeadvmiagGaeaai.telgi 197
                 + p+l+    C +g +++ + a+ i  gea+v +agGae++  +++++
  MMETSP1137-20121227|8010_1  79 EVPALTLNRLCGSGFQSVVTVAQEILLGEAQVGLAGGAENMSqSPMSV 126
                 3566677788*****************************764155655 PP

  == domain 2    score: 15.3 bits;  conditional E-value: 1.5e-06
   TIGR03150 229 lgeGagvlvlEelehAkaRgAkiyaevvGyglsaDAyHitapaeegegaaramkaalkdaglkpeevdyinaHgtstplgdkaEtkaikkvfgehakklavsstKsmtGHlLGaaGaveavitvlaleeqvvpptin 365
                 + +Ga+ +v+ +     a g k +ae+vG+++ +      +p+  g g + a++aal+++g++ +e++ +       p      + a  k+++ +++kl+v     ++GH LGa+Ga  +   + a+ ++ v+  ++
  MMETSP1137-20121227|8010_1 251 ICDGAAAIVVASEAAVTAHGLKPLAELVGWASVG-----VEPSVMGIGPVPAIQAALERSGMTLDEMERVEINEAFAP-----QVLACAKALSLDMSKLNVKGGAIALGHPLGASGARITAHLAHAIANGEVKTAVG 377
                 579***************************8876.....69****************************998766554.....6889999***************************9999999***9999887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (395 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       156  (0.0380302); expected 82.0 (0.02)
Passed bias filter:                       98  (0.0238908); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.38u 0.14s 00:00:00.52 Elapsed: 00:00:00.50
# Mc/sec: 1042.71
//
Query:       MMETSP1137-20121227|8011_1  [L=396]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      1e-14   52.5   0.0    1.8e-14   51.6   0.0    1.4  1  TIGR01557 myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class


Domain annotation for each model (and alignments):
>> TIGR01557  myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.6   0.0   4.5e-18   1.8e-14       1      55 [.     142     198 ..     142     200 .. 0.92

  Alignments for each domain:
  == domain 1    score: 51.6 bits;  conditional E-value: 4.5e-18
   TIGR01557   1 kkrvvWteelhrrFlqAvqklGgedkatPkkIlelmkvek...lTreqvkSHlQkyrl 55 
                 k+r  W +elhr+F  Av +lG  d a P+ I +lm+v++    +r+++kSHlQkyr+
  MMETSP1137-20121227|8011_1 142 KQRFMWGPELHRKFEAAVAQLGL-DAAKPQTISQLMGVSGkeaPSRQNIKSHLQKYRI 198
                 89*********************.*************986322589**********96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (396 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        64  (0.0156021); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.27u 0.15s 00:00:00.42 Elapsed: 00:00:00.42
# Mc/sec: 1244.47
//
Query:       MMETSP1137-20121227|8012_1  [L=455]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (455 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        60  (0.014627); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.15s 00:00:00.44 Elapsed: 00:00:00.41
# Mc/sec: 1464.76
//
Query:       MMETSP1137-20121227|8013_1  [L=635]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      1e-97  325.3   0.0    1.8e-97  324.5   0.0    1.4  1  TIGR01289 LPOR: light-dependent protochlorophyllide reductase
    9.2e-10   36.0   0.8    6.7e-09   33.2   0.0    2.1  2  TIGR01963 PHB_DH: 3-hydroxybutyrate dehydrogenase
    1.5e-09   35.7   0.1    8.6e-09   33.3   0.0    2.0  2  TIGR01830 3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase
    7.5e-09   33.4   0.1      3e-08   31.5   0.0    1.9  2  TIGR01829 AcAcCoA_reduct: acetoacetyl-CoA reductase
    4.2e-06   24.2   0.4    9.6e-06   23.1   0.0    1.7  2  TIGR01832 kduD: 2-deoxy-D-gluconate 3-dehydrogenase
    2.5e-05   20.7   0.0      5e-05   19.7   0.0    1.4  1  TIGR02632 RhaD_aldol-ADH: rhamnulose-1-phosphate aldolase/alcohol dehydrogenase


Domain annotation for each model (and alignments):
>> TIGR01289  LPOR: light-dependent protochlorophyllide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  324.5   0.0  2.6e-100   1.8e-97       3     282 ..      80     359 ..      78     410 .. 0.96

  Alignments for each domain:
  == domain 1    score: 324.5 bits;  conditional E-value: 2.6e-100
   TIGR01289   3 kptviitgassglglaaakalvekgkwhvvmacrdlekaekaakslglpkdsytilkldlasldsvrkfveqfre..sgrsldalvcnaavylpllkeplfsadgyelsvatnhlghfllsnllledlkksdekdkrliilgsvtanskelag.kvpikadlgdlsgleaglkaaniamidgkefkaakaykdsklcnmltvrelhrryhdetgivfaslypgcvadtglfrehlplfrtlfppfqkyitkgyvseeeagkrlaqvvadpklkksgvywswgk 282
                 k+ v+itg+ssglg ++a al+ +gk+hvv a rdl+k e +a+  g+   s+t +  +l s++svr fv++++e  + +++d l+cnaavy p l   ++s dg+e  +  n l hfl++ lll+dl ++d  d+r+i +gsvt+n ++++g  v + adl +l+gl+ g k++ i+m+dg +f++akaykdsklc m+t++ lh +yh++tgi+f+s+ypgc+a+++lfre+   fr+ fp f kyit+g+v eeeag rl qv  dp+  ksgvywsw+ 
  MMETSP1137-20121227|8013_1  80 KKLVVITGTSSGLGRKTAAALLRTGKYHVVGAVRDLDKMELVAEMDGFDMSSFTPMFCELNSFESVRSFVDDLKEfkAAKPVDRLICNAAVYQPSLPYAKWSVDGHEQQMQINFLSHFLMTSLLLDDLAQAD--DPRCIYVGSVTGNDNTVGGgGVYPIADLKELDGLKLGAKNP-ISMFDGYNFDGAKAYKDSKLCLMMTSNLLHDKYHKQTGIAFSSIYPGCIAESPLFREKREWFRKYFPIFMKYITGGFVGEEEAGMRLFQVAHDPRCSKSGVYWSWNG 359
                 789*********************************************************************99733579************************************************8775..79**************975279999****************.9********************************************************************************************************85 PP

>> TIGR01963  PHB_DH: 3-hydroxybutyrate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.2   0.0   9.8e-12   6.7e-09       2     141 ..      81     224 ..      80     229 .. 0.89
   2 ?   -1.4   1.8      0.35   2.4e+02      33      88 ..     539     594 ..     521     622 .. 0.60

  Alignments for each domain:
  == domain 1    score: 33.2 bits;  conditional E-value: 9.8e-12
   TIGR01963   2 kvalvtGaasGiglaiakelaaaGakvvvndle.eeaaeaaakeleeaggevlalkadvtkeeeiadlieava..aefgsldiLvnnAGi.qhvapieefptekfekiiavnltsafhtiraalpimkkqgwGriiniasvhgl 141
                 k +++tG++sG+g++ a +l + G   vv  ++  +++e +a++      + + +  ++ + e++++ ++ ++  +++  +d L+ nA + q   p  ++ ++ +e+ +++n  s f ++   l  + +++  r i+++sv g 
  MMETSP1137-20121227|8013_1  81 KLVVITGTSSGLGRKTAAALLRTGKYHVVGAVRdLDKMELVAEMDGFDMSSFTPMFCELNSFESVRSFVDDLKefKAAKPVDRLICNAAVyQPSLPYAKWSVDGHEQQMQINFLSHFLMTSLLLDDLAQADDPRCIYVGSVTGN 224
                 889*********************98888888746777777777777888889999*************99872256778999****99868889**********************************************985 PP

  == domain 2    score: -1.4 bits;  conditional E-value: 0.35
   TIGR01963  33 leeeaaeaaakeleeaggevlalkadvtkeeeiadlieavaaefgsldiLvnnA.Gi 88 
                 + e++a+ a++++++a + v+a +a +t++++ a++ +   ++  ++ +++n A Gi
  MMETSP1137-20121227|8013_1 539 AAEADAAVAEAAVAAAEAAVMAEAAVMTEAAH-AETADVNMQHDDHAVVIINGAnGI 594
                 33445555555555555555555555555553.344454445555555666655444 PP

>> TIGR01830  3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.3   0.0   1.3e-11   8.6e-09       1     140 [.      83     225 ..      83     232 .. 0.85
   2 ?   -1.3   0.7      0.46   3.1e+02      37      84 ..     544     591 ..     526     611 .. 0.51

  Alignments for each domain:
  == domain 1    score: 33.3 bits;  conditional E-value: 1.3e-11
   TIGR01830   1 alvtGasrgiGkaiakklakegakvviterskeekaeelaeelkeagv.kaaavkldvsdeeevkelveevee..elgeidilvnnAGitrDkl.llrmkeedwdevikvnLkgvfnvtkavlkkmikkrsGriinissvvgll 140
                 +++tG+s g+G+ +a +l ++g   v+  +++ +k  el++e+    + + + + +++++ e+v+++v++++e  +++ +d l++nA + + +l   + + + +++ +++n  + f +t   l  + ++   r i ++sv g  
  MMETSP1137-20121227|8013_1  83 VVITGTSSGLGRKTAAALLRTGKYHVVGAVRDLDK-MELVAEMDGFDMsSFTPMFCELNSFESVRSFVDDLKEfkAAKPVDRLICNAAVYQPSLpYAKWSVDGHEQQMQINFLSHFLMTSLLLDDLAQADDPRCIYVGSVTGND 225
                 68********************8777776656554.5666777775551556789**************9986326789************998457899999*************************************9965 PP

  == domain 2    score: -1.3 bits;  conditional E-value: 0.46
   TIGR01830  37 eelaeelkeagvkaaavkldvsdeeevkelveeveeelgeidilvnnA 84 
                 +++ae+  +a   a+++++ v  e++  e+ +  +++ ++  +++n A
  MMETSP1137-20121227|8013_1 544 AAVAEAAVAAAEAAVMAEAAVMTEAAHAETADVNMQHDDHAVVIINGA 591
                 222222223333344444444444444444444444444455555544 PP

>> TIGR01829  AcAcCoA_reduct: acetoacetyl-CoA reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.5   0.0   4.4e-11     3e-08       2     146 ..      82     229 ..      81     237 .. 0.90
   2 ?   -1.7   0.4      0.57   3.9e+02      34      75 ..     538     579 ..     527     602 .. 0.52

  Alignments for each domain:
  == domain 1    score: 31.5 bits;  conditional E-value: 4.4e-11
   TIGR01829   2 valvtGglgGiGtaickrlakdGykvvanvapneerakewlqekevegfdvavvkadvssfeeakaavakvea..elGpvdvlvnnaGitrdav.fkkmtkeqWeevidtnlnsvfnvtrpviegmlergfGriinissvnGlkGqfG 146
                 + ++tG++ G+G++ + +l + G   v + + + ++ + +++  ++  + ++ +  +++sfe+ ++ v+++++  +  pvd l+ na + + ++ ++k + +  e+ +++n+ s f +t  +++++++ +  r i + sv G    +G
  MMETSP1137-20121227|8013_1  82 LVVITGTSSGLGRKTAAALLRTGKYHVVGAVRDLDKMELVAEMDGFDMSSFTPMFCELNSFESVRSFVDDLKEfkAAKPVDRLICNAAVYQPSLpYAKWSVDGHEQQMQINFLSHFLMTSLLLDDLAQADDPRCIYVGSVTGNDNTVG 229
                 6789****************999666666666999999999*****************************997336789*********99987659**********************************************877665 PP

  == domain 2    score: -1.7 bits;  conditional E-value: 0.57
   TIGR01829  34 neerakewlqekevegfdvavvkadvssfeeakaavakveae 75 
                 ++++a +   e +v   + av+      +e+a+a  a+v+ +
  MMETSP1137-20121227|8013_1 538 EAAEADAAVAEAAVAAAEAAVMAEAAVMTEAAHAETADVNMQ 579
                 333333444444444444444444444445555555555444 PP

>> TIGR01832  kduD: 2-deoxy-D-gluconate 3-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.1   0.0   1.4e-08   9.6e-06       6     136 ..      81     216 ..      78     228 .. 0.76
   2 ?   -4.5   0.7       3.8   2.6e+03      34      52 ..     553     569 ..     539     595 .. 0.42

  Alignments for each domain:
  == domain 1    score: 23.1 bits;  conditional E-value: 1.4e-08
   TIGR01832   6 kvalvtGantGlGqgiavglaeaGadivgvgiselsetqekvealG...rkflslkadladeeaakalvdeave..eagkidilvnnaGiirre.davefsekdwddvlnvnlkavfllsqavakkllkqGrkgkii 136
                 k +++tG+++GlG+  a +l ++G   v  ++++l++ +   e  G     f+ +  +l + e+++++vd+  e  +a+ +d l+ na + + +    ++s    ++ +++n+ + fl++  +  +l +q +  + i
  MMETSP1137-20121227|8013_1  81 KLVVITGTSSGLGRKTAAALLRTGKYHVVGAVRDLDKMELVAEMDGfdmSSFTPMFCELNSFESVRSFVDDLKEfkAAKPVDRLICNAAVYQPSlPYAKWSVDGHEQQMQINFLSHFLMTSLLLDDL-AQADDPRCI 216
                 7899********************97666667777777666667772224566667888999999999*98765225679**********99762456788888999************98766543.444455555 PP

  == domain 2    score: -4.5 bits;  conditional E-value: 3.8
   TIGR01832  34 gvgiselsetqekvealGr 52 
                 +++ + + e++  v ++ +
  MMETSP1137-20121227|8013_1 553 AAEAAVMAEAA--VMTEAA 569
                 22222222222..112222 PP

>> TIGR02632  RhaD_aldol-ADH: rhamnulose-1-phosphate aldolase/alcohol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.0   7.3e-08     5e-05     404     533 ..      70     201 ..      52     225 .. 0.83

  Alignments for each domain:
  == domain 1    score: 19.7 bits;  conditional E-value: 7.3e-08
   TIGR02632 404 rrmPkekelarrvalvtGgasGiGrevarrlvdeGa.hvvladldaeaaeavaaelvdkfGadkavalkldvtdeeavkaafaeva..layGGvdivvnnaGiav.skpleeteleeWdlnldilatGyflvar 533
                 r++ +ek  +++++++tG++sG+Gr++a  l   G  hvv a  d +++e va+   d f +     +  ++ + e+v++ +++     a   vd ++ na +   s p+ + + +  + +++i+   +fl++ 
  MMETSP1137-20121227|8013_1  70 RKAAREKFGSKKLVVITGTSSGLGRKTAAALLRTGKyHVVGAVRDLDKMELVAEM--DGFDMSSFTPMFCELNSFESVRSFVDDLKefKAAKPVDRLICNAAVYQpSLPYAKWSVDGHEQQMQINFLSHFLMTS 201
                 6788999999***********************9964888899999999999874..569999999************9988876422455679*99999998753779999999999********99999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (635 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       288  (0.0702097); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.48u 0.15s 00:00:00.63 Elapsed: 00:00:00.50
# Mc/sec: 1676.26
//
Query:       MMETSP1137-20121227|8014_1  [L=46]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (46 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        31  (0.00755729); expected 82.0 (0.02)
Passed bias filter:                       25  (0.00609459); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.11s 00:00:00.22 Elapsed: 00:00:00.23
# Mc/sec: 263.98
//
Query:       MMETSP1137-20121227|8015_1  [L=70]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       107  (0.0260848); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:00.30
# Mc/sec: 307.97
//
Query:       MMETSP1137-20121227|8016_1  [L=205]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00018   19.3   0.6    0.00053   17.8   0.0    2.0  3  TIGR02246 TIGR02246: conserved hypothetical protein


Domain annotation for each model (and alignments):
>> TIGR02246  TIGR02246: conserved hypothetical protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.1      0.27   1.1e+03      79     106 ..      14      41 ..       7      48 .. 0.66
   2 !   17.8   0.0   1.3e-07   0.00053      11      55 ..      70     113 ..      63     127 .. 0.87
   3 ?   -1.7   0.0      0.14   5.6e+02      98     114 ..     130     146 ..     114     157 .. 0.73

  Alignments for each domain:
  == domain 1    score: -2.6 bits;  conditional E-value: 0.27
   TIGR02246  79 dlaivhaeatitatgkkraaaraavrlt 106
                  +a+ +a     a + ++++++a++++ 
  MMETSP1137-20121227|8016_1  14 GAALHQATRRLEAQPHAEERPEAKIAAR 41 
                 4566666666677777777777777765 PP

  == domain 2    score: 17.8 bits;  conditional E-value: 1.3e-07
   TIGR02246  11 arleaAwaagDaeafAnlFteDgvfvtvpGqklkGreaIaaalea 55 
                 + +e+Aw+++D+++ A  + +D  +   +  +l+Gre+++++l+ 
  MMETSP1137-20121227|8016_1  70 RMAEDAWNSRDPDRIALAYSPDTKWR-NRNIFLQGREEVRQFLKG 113
                 66899********************9.7888*********99875 PP

  == domain 3    score: -1.7 bits;  conditional E-value: 0.14
   TIGR02246  98 aaraavrltlvavkadg 114
                  +++++++ +v++ +d+
  MMETSP1137-20121227|8016_1 130 HTEERIAVRFVYEYRDD 146
                 56777888888888875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (205 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       108  (0.0263286); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.19u 0.16s 00:00:00.35 Elapsed: 00:00:00.50
# Mc/sec: 541.16
//
Query:       MMETSP1137-20121227|8017_1  [L=324]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (324 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        89  (0.0216967); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.16s 00:00:00.42 Elapsed: 00:00:00.32
# Mc/sec: 1336.39
//
Query:       MMETSP1137-20121227|8018_1  [L=486]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.4e-07   26.2   1.9    5.7e-07   25.8   1.3    1.1  1  TIGR02956 TMAO_torS: TMAO reductase sytem sensor TorS


Domain annotation for each model (and alignments):
>> TIGR02956  TMAO_torS: TMAO reductase sytem sensor TorS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.8   1.3   1.4e-10   5.7e-07     763     965 ..     216     437 ..     210     439 .. 0.77

  Alignments for each domain:
  == domain 1    score: 25.8 bits;  conditional E-value: 1.4e-10
   TIGR02956 763 LlkqLkeleeake....e.lkfiavsAhvfnedvekylaagFdgflaKPlsekqLvatlakil........egkkseeeapvleksvsleeasvieseqkds...laesqeksev.lldeeqlqqD..ievlGvekvrklv.alfkqssaeeleeleaaravddsaevkklaHkLKgsaaslglvqltqlCqelEkqkkagalelsdideikqvvqasktaLd 965
                 L ++L el e++     e +++ a++A+ +++     ++a+F  ++   l  ++L +  a++         + +  ++e++ +++++  e a+v++ + ++    ++ ++ ++     +ee ++ +  + ++G ek+ k+v + f +s  ++ e++ +a +  d   +++laH+LKg++  lg  +  ++ ++l    + +    +++de+k+ + a   aL+
  MMETSP1137-20121227|8018_1 216 LHEDLTELREQNMlmraElVRVRAMAANAIDDTAVDATSALFRNVVDSSLIDQRLSPRHAEASqpklsaqlSAETCDKESQAVDTHTR-EIAAVLPPAVQTLlagEVSASSSTAAsSYNEEAFDREhvVRLVGGEKLLKMVfSNFYKSNVKTAENITKALKQADWPRLRRLAHTLKGASSYLGAHATVDASRKLMLSAEGAVRGHVHLDELKANAXAVLAALE 437
                 67777777777667776679999******************************99877666553333332244444444444444333.334445555444467744444444445889988865544899******99985679999999*******************************************999777777999*******9999999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (486 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       191  (0.0465627); expected 82.0 (0.02)
Passed bias filter:                      112  (0.0273038); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.16s 00:00:00.53 Elapsed: 00:00:00.64
# Mc/sec: 1002.29
//
Query:       MMETSP1137-20121227|8019_1  [L=804]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00025   18.6   1.1      0.095   10.2   0.0    3.0  3  TIGR03598 GTPase_YsxC: ribosome biogenesis GTP-binding protein YsxC
  ------ inclusion threshold ------
      0.016   12.8   0.0       0.19    9.3   0.0    2.4  2  TIGR00231 small_GTP: small GTP-binding protein domain


Domain annotation for each model (and alignments):
>> TIGR03598  GTPase_YsxC: ribosome biogenesis GTP-binding protein YsxC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.6   0.0    0.0012       2.4       3      39 ..     162     198 ..     160     205 .. 0.86
   2 !   10.2   0.0   4.6e-05     0.095      65     153 ..     283     373 ..     276     391 .. 0.75
   3 ?   -1.8   0.1      0.23   4.6e+02     113     150 ..     424     461 ..     415     481 .. 0.76

  Alignments for each domain:
  == domain 1    score: 5.6 bits;  conditional E-value: 0.0012
   TIGR03598   3 flksaaklkqlpedklpeiafaGrSNvGKSsliNaLt 39 
                 ++k +++l++  + +lp i+++G   +GKSs i  ++
  MMETSP1137-20121227|8019_1 162 MIKRIESLSTATKLELPRIVVIGSESSGKSSTIERIA 198
                 566778888999999******************9876 PP

  == domain 2    score: 10.2 bits;  conditional E-value: 4.6e-05
   TIGR03598  65 elrlvDlPGYGyakvske...ekekwqklieeYLekrenLkgvvllvDirhelkelDlellellkeakipvlvvltKaDklkkselkkalkk 153
                 +l lvDlPG   a ++ e   + ++ +++ ++YL++ +++   v+   i +   ++ ++l++  k++++++  vl KaD  +  + k+++++
  MMETSP1137-20121227|8019_1 283 TLELVDLPGIVAASIEGEpadMMQRTRNISDRYLRHENTIVVAVVPANITRVRDSQAMQLVQANKKEGVTL-GVLAKADLAHDPRFKQRKQS 373
                 578**********9976511155666677899*******99999888888877777777777776666655.57889998877766666554 PP

  == domain 3    score: -1.8 bits;  conditional E-value: 0.23
   TIGR03598 113 elkelDlellellkeakipvlvvltKaDklkkselkka 150
                 e+ +++ ++ + ++e+++ +  +l K+D l +++ +++
  MMETSP1137-20121227|8019_1 424 EWFKDEAKVAKEMREEQCGIDALLKKIDGLFTKHFQST 461
                 56677888999999999999999***999887776654 PP

>> TIGR00231  small_GTP: small GTP-binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   0.0   9.2e-05      0.19       4      30 ..     178     204 ..     176     221 .. 0.85
   2 ?    0.2   0.0      0.06   1.2e+02      42      66 ..     272     295 ..     259     375 .. 0.56

  Alignments for each domain:
  == domain 1    score: 9.3 bits;  conditional E-value: 9.2e-05
   TIGR00231   4 ikivivGhvdvGKstLlnsllknkisi 30 
                  +iv++G+ ++GKs++++++++ + ++
  MMETSP1137-20121227|8019_1 178 PRIVVIGSESSGKSSTIERIAGFSLFP 204
                 58******************9877665 PP

  == domain 2    score: 0.2 bits;  conditional E-value: 0.06
   TIGR00231  42 vteqieedGktykvnllDTaGqedf 66 
                  t  i+ ++++ +++l+D++G ++ 
  MMETSP1137-20121227|8019_1 272 LTIEIRKKSVP-TLELVDLPGIVAA 295
                 55556777766.8899999994333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (804 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       228  (0.0555826); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.19s 00:00:00.69 Elapsed: 00:00:01.06
# Mc/sec: 1001.12
//
Query:       MMETSP1137-20121227|8020_1  [L=250]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (250 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        93  (0.0226719); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.10s 00:00:00.32 Elapsed: 00:00:00.40
# Mc/sec: 824.93
//
Query:       MMETSP1137-20121227|8021_1  [L=155]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00059   16.2   2.1     0.0007   16.0   1.5    1.0  1  TIGR03185 DNA_S_dndD: DNA sulfur modification protein DndD
     0.0021   13.6   2.7     0.0026   13.3   1.8    1.1  1  TIGR02169 SMC_prok_A: chromosome segregation protein SMC
      0.007   11.9   4.0     0.0083   11.7   2.8    1.0  1  TIGR02168 SMC_prok_B: chromosome segregation protein SMC
     0.0098   14.1   6.8      0.012   13.8   4.7    1.2  1  TIGR02473 flagell_FliJ: flagellar export protein FliJ
  ------ inclusion threshold ------
      0.035   10.6   1.4      0.044   10.3   1.0    1.1  1  TIGR02231 TIGR02231: conserved hypothetical protein
      0.078    9.8   3.2        0.1    9.4   2.2    1.1  1  TIGR00414 serS: serine--tRNA ligase
        3.4    5.7   9.0       0.35    8.8   0.5    2.1  2  TIGR00293 TIGR00293: prefoldin, alpha subunit


Domain annotation for each model (and alignments):
>> TIGR03185  DNA_S_dndD: DNA sulfur modification protein DndD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   1.5   1.2e-06    0.0007     217     294 ..       8      84 ..       4     106 .. 0.73

  Alignments for each domain:
  == domain 1    score: 16.0 bits;  conditional E-value: 1.2e-06
   TIGR03185 217 elkeqeekievlaqeiaalrkeleeaerkleslekkfeseGgelaeereelerqqkeleaklkavraelrelaadl.lP 294
                 e+  +ee+i+ + +ei +++k++e  +  +  +    e+  g ++ee+++l+r++++l+ +++++r+e +el+++l  P
  MMETSP1137-20121227|8021_1   8 EVSTLEERIQAIDAEISEVEKQIEACDAXITIATX--EQMRGXWIEEKKQLRRKEEQLRDEKRQLREEKTELLKRLpTP 84 
                 44556666667777777777777666666665544..566799****************************99986555 PP

>> TIGR02169  SMC_prok_A: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   1.8   4.4e-06    0.0026     423     492 ..       9      76 ..       3     102 .. 0.38

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 4.4e-06
   TIGR02169 423 laelkaelerieekiaeleeeleelaeeikkaeqkleqlkedlekaekelrklkeeleklekelselere 492
                 ++ l++ +++i ++i e+e++ e+ ++ i  a+   eq++    +++k+lr+++e+l++ +++l+e + e
  MMETSP1137-20121227|8021_1   9 VSTLEERIQAIDAEISEVEKQIEACDAXITIATX--EQMRGXWIEEKKQLRRKEEQLRDEKRQLREEKTE 76 
                 2233333333333333333333333332222221..1122222222222222222222222222222222 PP

>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.7   2.8   1.4e-05    0.0083     296     362 ..       8      76 ..       3      90 .. 0.36

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 1.4e-05
   TIGR02168 296 eisrleqeieilkerleqlekeleeleeq..leeleskkeeleeelaeleeeleelkeelesleaelee 362
                 e+s+le++i+ ++++ +++ek++e+ ++   +++ e+ +    ee+++l+ + e+l+ e  +l++e +e
  MMETSP1137-20121227|8021_1   8 EVSTLEERIQAIDAEISEVEKQIEACDAXitIATXEQMRGXWIEEKKQLRRKEEQLRDEKRQLREEKTE 76 
                 233333333333333333333333322220022233333333333333333333333333333332222 PP

>> TIGR02473  flagell_FliJ: flagellar export protein FliJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   4.7   2.1e-05     0.012      71     131 ..      10      70 ..       8     103 .. 0.96

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 2.1e-05
   TIGR02473  71 rqldeaieqqqqelaelekeleakrerlleaakelkalekLkekkqkeeraeeakrEqkem 131
                  +l+e+i+    e++e ek++ea+      a  e +   +++ekkq ++ +e+++ E +++
  MMETSP1137-20121227|8021_1  10 STLEERIQAIDAEISEVEKQIEACDAXITIATXEQMRGXWIEEKKQLRRKEEQLRDEKRQL 70 
                 5799*******************************************************97 PP

>> TIGR02231  TIGR02231: conserved hypothetical protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   1.0   7.5e-05     0.044      72     138 ..       8      76 ..       4      90 .. 0.88

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 7.5e-05
   TIGR02231  72 riaelrkkireleaeledledradalkklk..kfledirekltepikdlkreeadlkelkklldfaese 138
                 ++  l+++i++++ae+ ++e +++a ++ +   + e++r    e++k+l+r+e++l++ k  l   ++e
  MMETSP1137-20121227|8021_1   8 EVSTLEERIQAIDAEISEVEKQIEACDAXItiATXEQMRGXWIEEKKQLRRKEEQLRDEKRQLREEKTE 76 
                 78899***********************99888999************999999999888877766655 PP

>> TIGR00414  serS: serine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   2.2   0.00017       0.1      40     103 ..      10      74 ..       4      86 .. 0.71

  Alignments for each domain:
  == domain 1    score: 9.4 bits;  conditional E-value: 0.00017
   TIGR00414  40 kkllskieelqkkrnelskeigkkkaek.kdkieelkkelkelkeeleeleaelkeleeeleekl 103
                   l+++i+ + ++ +e++k+i++ +a    ++ e+++    e+k++l ++e++l++++++l+e  
  MMETSP1137-20121227|8021_1  10 STLEERIQAIDAEISEVEKQIEACDAXItIATXEQMRGXWIEEKKQLRRKEEQLRDEKRQLREEK 74 
                 45667788888888888888888444330334777888888888888888888888888887654 PP

>> TIGR00293  TIGR00293: prefoldin, alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   0.5    0.0006      0.35      15      39 ..       9      33 ..       4      48 .. 0.51
   2 ?    1.0   1.6      0.16        94       7      32 ..      52      77 ..      41      83 .. 0.55

  Alignments for each domain:
  == domain 1    score: 8.8 bits;  conditional E-value: 0.0006
   TIGR00293 15 vealqaeiaalraliaeleeaietl 39
                v+ l+++i+a++a i+e+e+ ie+ 
  MMETSP1137-20121227|8021_1  9 VSTLEERIQAIDAEISEVEKQIEAC 33
                4444444444444444444444432 PP

  == domain 2    score: 1.0 bits;  conditional E-value: 0.16
   TIGR00293  7 elqqlqeevealqaeiaalraliael 32
                e++ql ++ e l++e  +lr+ ++el
  MMETSP1137-20121227|8021_1 52 EKKQLRRKEEQLRDEKRQLREEKTEL 77
                44444444444444444444444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (155 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       244  (0.0594832); expected 82.0 (0.02)
Passed bias filter:                      185  (0.0451); expected 82.0 (0.02)
Passed Vit filter:                        30  (0.00731351); expected 4.1 (0.001)
Passed Fwd filter:                         8  (0.00195027); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.24u 0.14s 00:00:00.38 Elapsed: 00:00:00.40
# Mc/sec: 511.46
//
Query:       MMETSP1137-20121227|8022_1  [L=181]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.012   13.7   0.1      0.016   13.3   0.1    1.1  1  TIGR02985 Sig70_bacteroi1: RNA polymerase sigma-70 factor, Bacteroides expansion family 1


Domain annotation for each model (and alignments):
>> TIGR02985  Sig70_bacteroi1: RNA polymerase sigma-70 factor, Bacteroides expansion family 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.1   3.9e-06     0.016      91     127 ..      52      89 ..      29      93 .. 0.78

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 3.9e-06
   TIGR02985  91 leeeeeeeles.keleeiieeaiekLPeqcrkifklsr 127
                  e+e  + l + +ele+ ++ea+++LP+++rk f+  r
  MMETSP1137-20121227|8022_1  52 QEAERRAHLARsQELESSLNEALKALPAKQRKSFTHAR 89 
                 345666777777********************998776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (181 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       126  (0.0307167); expected 82.0 (0.02)
Passed bias filter:                      100  (0.0243784); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.20u 0.13s 00:00:00.33 Elapsed: 00:00:00.43
# Mc/sec: 555.58
//
Query:       MMETSP1137-20121227|8023_1  [L=209]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (209 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        77  (0.0187713); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.15s 00:00:00.35 Elapsed: 00:00:00.38
# Mc/sec: 725.94
//
Query:       MMETSP1137-20121227|8025_1  [L=613]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.3e-41  138.7  18.8    1.2e-27   94.7   1.8    3.0  2  TIGR00893 2A0114: D-galactonate transporter
    1.1e-31  108.3  18.9    5.2e-30  102.7   3.0    2.5  2  TIGR02332 HpaX: 4-hydroxyphenylacetate permease
    5.7e-10   36.6  13.8    3.8e-06   24.0   0.9    2.2  2  TIGR00881 2A0104: phosphoglycerate transporter family protein


Domain annotation for each model (and alignments):
>> TIGR00893  2A0114: D-galactonate transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.7   1.8   9.1e-31   1.2e-27      12     205 ..      78     287 ..      68     298 .. 0.84
   2 !   46.4   5.9     4e-16   5.5e-13     194     372 ..     327     522 ..     314     528 .. 0.77

  Alignments for each domain:
  == domain 1    score: 94.7 bits;  conditional E-value: 9.1e-31
   TIGR00893  12 tlSiAavtlkedLglsaaqyglvfsafsigyvlfqlpggllldriGakktlavaivlWgl....ftllqafat...alvslivlRvllGlaEaplfPgiikivasWFP..akeratavsifnsaqalgaiiggplvgwilvefs.......WqlvFiieGvlaiilgvlilkvikdkpekakvlk.eeeksivvggllaeqagkknseakk 205
                 t ++Aa+t+   Lgls+a+ygl+ s+f++g++  qlp+ +l +++Ga   la +++lWg+    f +l af t   a+ ++  lR  lG+aE++l P++  +++ W+   + + + + +  ++a+++++++gg ++   + +++       Wq++F++e+v+ ++ + +   ++ ++pe+a +l+ +e + + +++l+   +g  + ++k 
  MMETSP1137-20121227|8025_1  78 TFGYAALTMVPSLGLSSAEYGLGSSIFYAGFMTTQLPAIWLTRKLGAPRALAGMLLLWGItaslFATLRAFTTqiaAFRGFCCLRLFLGAAEGGLLPCMFVYLSVWYGqlPDRLSGVHGQVTLAAQIASVVGGLVALP-VLKLDgfcgmegWQWLFVLEAVPVACAAAATPRMLARDPEHAPWLNaKEVQMLRAQRLRTGANGVRQVKVKV 287
                 6789******************************************************852222777778877999999****************************73357889999***********999877775.556666999999*******************99999888888776515666667777777766555555554 PP

  == domain 2    score: 46.4 bits;  conditional E-value: 4e-16
   TIGR00893 194 eqagkknseakkaqikelLkdrrviglalgqflvnillyffltwfplylkq..erglslleagllaslpaivgfvgmvlggils................dlllkkgkslvlarktaiiaglvlsllliatnlvaskiaalalvalaffgkglaailwavisdvlskeiagltgGlinllGnlagivgPivigaiaa 372
                 +qa   +++++   + ++L+d rvi la+ +f ++++l+ +++w pl++++  er +s  ++ +la + +++g+vg +++g+++                d +l+++++  +a +++ +a+ +++l+  + + ++++ + l  va a++ + ++ +l++ +s+ l  e a+++ ++++++ +++g+vgP+++g +a 
  MMETSP1137-20121227|8025_1 327 QQAWEFDQSSALRLMGAVLRDMRVIYLAALTFFLQLTLWSLIYWQPLLIQEgsERAVSDSSVIVLAGISYACGVVGTYALGWHAsssigccehgrrsqhaDQALERRWHSAIAMAVGGVALCASVLIQSIGEAAFAPSYLLLCVANAGLWS-VGGLLATWPSEWLTAELAAVALAVTSTASAIGGLVGPALVGLLAR 522
                 44444445667778899********************************963367788888899999**************97522222222222222225666777*************7777777777775555555554444444444.499**************************************9875 PP

>> TIGR02332  HpaX: 4-hydroxyphenylacetate permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.7   3.0   3.8e-33   5.2e-30      12     211 ..      66     272 ..      53     297 .. 0.83
   2 !   10.5   4.6   3.8e-05     0.052     243     393 ..     350     521 ..     320     531 .. 0.73

  Alignments for each domain:
  == domain 1    score: 102.7 bits;  conditional E-value: 3.8e-33
   TIGR02332  12 flfvlfvfsfldrinigfagltmgkdlglsatmfglaatlfyvayvifgipsnimlakvgarrwiatimvlwgias....tatmfatspe...slyllrilvgiaeagflpgillyltfwfpayfr..aranalfmvampvttalglilsgyilaldgllalkgwqwlflleglpsvllgvvvwfylddspdkakwldkeekkalkemi 211
                 f +vl++ +++     g+a ltm   lgls++ +gl +++fy+ ++   +p+  +  k+ga r +a++++lwgi++    t   f+t       +  lr+++g ae g+lp +++yl+ w+       +     + +a  ++ ++g +++  +l ldg   + gwqwlf+le +p       +   l   p++a wl+ +e + l+   
  MMETSP1137-20121227|8025_1  66 FAIVLLI-AMFS-RTFGYAALTMVPSLGLSSAEYGLGSSIFYAGFMTTQLPAIWLTRKLGAPRALAGMLLLWGITAslfaTLRAFTTQIAafrGFCCLRLFLGAAEGGLLPCMFVYLSVWYGQLPDrlSGVHGQVTLAAQIASVVGGLVALPVLKLDGFCGMEGWQWLFVLEAVPVACAAAATPRMLARDPEHAPWLNAKEVQMLRAQR 272
                 3333333.3334.468**********************************************************75222133345554431115679***********************987643113456678889999*************************************************************9998754 PP

  == domain 2    score: 10.5 bits;  conditional E-value: 3.8e-05
   TIGR02332 243 vvmlytlayfcltntlsaisiwtpqilqs.fntgssnitigllaavpqictilgmv..yw..............srrsdrlkerkkhtilpylf....aaagwllasatdhsli.qllsiimastgsfsamaifwttpdqvislraravaiavinavgnvgsalsplligilk 393
                 v+ l +l+ f l  tl ++  w p ++q   ++  s+  + +la +   c ++g     w              s+++d+  er+ h+++   +     +a  l+ s  + ++    l + +a  g +s   ++ t p + ++ +  ava+av  ++  +g  + p l+g+l 
  MMETSP1137-20121227|8025_1 350 VIYLAALT-FFLQLTLWSLIYWQPLLIQEgSERAVSDSSVIVLAGISYACGVVGTYalGWhasssigccehgrrSQHADQALERRWHSAIAMAVggvaLCASVLIQSIGEAAFApSYLLLCVANAGLWSVGGLLATWPSEWLTAELAAVALAVTSTASAIGGLVGPALVGLLA 521
                 44444554.558889999999***9999724567789999999999999999986322233433333333333356778999*****99887541111356677777777776624556778999*********************************************985 PP

>> TIGR00881  2A0104: phosphoglycerate transporter family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   3.6   2.2e-07    0.0003       1     158 [.      66     237 ..      66     289 .. 0.81
   2 !   24.0   0.9   2.8e-09   3.8e-06     197     370 ..     329     521 ..     300     528 .. 0.73

  Alignments for each domain:
  == domain 1    score: 17.7 bits;  conditional E-value: 2.2e-07
   TIGR00881   1 figylayylvRknfalalpelqeeiglsktdlGlllsafsiaYgiskfvvgvvsDrvsarvflaigLilvaivnlflgfss.......slwvliallalnGlfqglgwppcgrlltkwfsr...s...erGtvvaiwnishnvggallpplvll.aialllswhvvfivpgi 158
                 f ++l++ ++ ++f  a+  ++ ++gls+++ Gl +s f++ +   +++  ++  + +a   la +L+l++i   +++          ++  +  l+++ G ++g   p+   +l  w+ +   +     G+v     i++ vgg ++ p++ l ++  +  w+++f++ ++
  MMETSP1137-20121227|8025_1  66 FAIVLLIAMFSRTFGYAALTMVPSLGLSSAEYGLGSSIFYAGFMTTQLPAIWLTRKLGAPRALAGMLLLWGITASLFATLRafttqiaAFRGFCCLRLFLGAAEGGLLPCMFVYLSVWYGQlpdRlsgVHGQVTLAAQIASVVGGLVALPVLKLdGFCGMEGWQWLFVLEAV 237
                 5677778888899***********************************************************9888876665666777777789999**********************76322211124555555677888888777666654378888899999988774 PP

  == domain 2    score: 24.0 bits;  conditional E-value: 2.8e-09
   TIGR00881 197 kkeeeltkkeillqyvlknkvlwlislvnvfvyvvrtgiedWvplYltqekglskekas..vavtlfelaglvGtllaGwlsDk................lfkgrraplavifmaliivsllvywlivaan...klvvlillfvlGflvyGpilligvaaselapkkaiGtaaglvglfaylggilaglplgyla 370
                   e + +    l+  vl++  +++++   +f+ ++ + ++ W pl + +  + +  ++s  v   +    g+vGt + Gw +                   +++r +++  +++ ++ +++ v+ + + +    +   l++++ +G+ + G  l ++   se    ++++ a +++++++ +gg++ ++ +g+la
  MMETSP1137-20121227|8025_1 329 AWEFDQSSALRLMGAVLRDMRVIYLAALTFFLQLTLWSLIYWQPLLIQEGSERAVSDSSviVLAGISYACGVVGTYALGWHASSsigccehgrrsqhadqALERRWHSAIAMAVGGVALCASVLIQSIGEAafaPSYLLLCVANAGLWSVGGLLATW--PSEWLTAELAAVALAVTSTASAIGGLVGPALVGLLA 521
                 223334444457889*****************************98877544444444400444456778***********9999*************96555555555555556676666666555554447666778999999999999866555..6899999***********************999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (613 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       178  (0.0433935); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.48u 0.18s 00:00:00.65 Elapsed: 00:00:00.69
# Mc/sec: 1172.60
//
Query:       MMETSP1137-20121227|8026_1  [L=184]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (184 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       151  (0.0368113); expected 82.0 (0.02)
Passed bias filter:                      107  (0.0260848); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.14s 00:00:00.35 Elapsed: 00:00:00.36
# Mc/sec: 674.61
//
Query:       MMETSP1137-20121227|8027_1  [L=372]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (372 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        43  (0.0104827); expected 82.0 (0.02)
Passed bias filter:                       40  (0.00975134); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.16s 00:00:00.44 Elapsed: 00:00:00.33
# Mc/sec: 1487.88
//
Query:       MMETSP1137-20121227|8028_1  [L=466]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00023   18.0   0.1    0.00034   17.4   0.0    1.2  1  TIGR03947 viomycin_VioD: capreomycidine synthase
    0.00048   17.0   0.0     0.0007   16.4   0.0    1.1  1  TIGR03542 DAPAT_plant: LL-diaminopimelate aminotransferase
    0.00048   16.9   0.0    0.00077   16.2   0.0    1.2  1  TIGR01141 hisC: histidinol-phosphate transaminase
     0.0014   15.6   0.0     0.0024   14.8   0.0    1.3  1  TIGR01140 L_thr_O3P_dcar: threonine-phosphate decarboxylase


Domain annotation for each model (and alignments):
>> TIGR03947  viomycin_VioD: capreomycidine synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.0   3.3e-07   0.00034      99     222 ..     154     285 ..     148     295 .. 0.70

  Alignments for each domain:
  == domain 1    score: 17.4 bits;  conditional E-value: 3.3e-07
   TIGR03947  99 vdpayhslselavalgakvrrwplaaerdfrpdldd.lralvtdrtrlvvv..nfPhnPtGasvderelsellelaaesgavllWdaafadlvydae.....plpepsaaadrvisfgtlskafGlpGlrvG 222
                   p++ s +++ +a+g  vr ++   +     d +  l +l    +  vv+     hnPtG+ +++++ ++  + +a++ a+ l+daa+  lv         ++ + + +     ++  +sk  Gl   rvG
  MMETSP1137-20121227|8028_1 154 PSPSWASHAQIFKAVGYIVRYYRYYDAASGGLDAESmLFDLSHAEAGSVVLlqACGHNPTGVDLNTAQWAAAADAIAAARAFPLFDAAYHGLVSGDAqxdvwAVRHFAXRGFEMAAVQSFSKNMGLYSERVG 285
                 56777777888888888888888765555555554415566555554444322578***********************************996432011112333344444556778999****9999998 PP

>> TIGR03542  DAPAT_plant: LL-diaminopimelate aminotransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0   6.8e-07    0.0007     174     256 ..     202     285 ..     168     298 .. 0.81

  Alignments for each domain:
  == domain 1    score: 16.4 bits;  conditional E-value: 6.8e-07
   TIGR03542 174 vdiiylCsPnnPtGtvltkeqlkelvdyakendslilfdaayeafisdpslPksiyeiegakecaie...irsfsktlGftGvrlg 256
                 v ++  C   nPtG  l+++q  +  d   +  +  lfdaay+  +s ++    ++ +++      e   ++sfsk++G+   r+g
  MMETSP1137-20121227|8028_1 202 VVLLQAC-GHNPTGVDLNTAQWAAAADAIAAARAFPLFDAAYHGLVSGDAQ-XDVWAVRHFAXRGFEmaaVQSFSKNMGLYSERVG 285
                 4444455.579***********************************98764.56777776655555522268*******9888876 PP

>> TIGR01141  hisC: histidinol-phosphate transaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0   7.6e-07   0.00077      98     221 ..     150     286 ..     144     293 .. 0.77

  Alignments for each domain:
  == domain 1    score: 16.2 bits;  conditional E-value: 7.6e-07
   TIGR01141  98 avlvleptysmYevsakiagaevkevplked..gqedleavle..aakekvklvfl.asPnnPtGnllkreeiekvleev.e.dalVVvDeAYieFsee......asvlellaeypnlvvlrTlSKafgLAglRvGy 221
                  v+ ++p+++ ++ + k+ g  v+ +++ +   g  d e++l    ++e   +v l a  +nPtG  l++++  + +++  + +a+ + D AY    +         v  ++ +  +++ ++++SK +gL + RvG 
  MMETSP1137-20121227|8028_1 150 VVYLPSPSWASHAQIFKAVGYIVRYYRYYDAasGGLDAESMLFdlSHAEAGSVVLLqACGHNPTGVDLNTAQWAAAADAIaAaRAFPLFDAAYHGLVSGdaqxdvWAVRHFAXRGFEMAAVQSFSKNMGLYSERVGT 286
                 4677889999999999999999999888877665566666665556666667777735579****************999767**********999887676553233334444459*******************7 PP

>> TIGR01140  L_thr_O3P_dcar: threonine-phosphate decarboxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   2.4e-06    0.0024      90     175 ..     151     249 ..     142     288 .. 0.74

  Alignments for each domain:
  == domain 1    score: 14.8 bits;  conditional E-value: 2.4e-06
   TIGR01140  90 vlvlaptyseyaralraagaevvels.........dleelaael....eeadllvvvnPnNPtGrllekeellalaerlkarggllvvDEAFidftpae 175
                 v +++p+++ +a+ ++a g+ v+ +          d+e++  +l    +   +l+ +  +NPtG  l++++ +a+a++++a++++ + D A+  ++  +
  MMETSP1137-20121227|8028_1 151 VYLPSPSWASHAQIFKAVGYIVRYYRyydaasgglDAESMLFDLshaeAGSVVLLQACGHNPTGVDLNTAQWAAAADAIAAARAFPLFDAAYHGLVSGD 249
                 4789*********************999**99999444444333442134444444567*********************************9887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (466 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        92  (0.0224281); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.34u 0.16s 00:00:00.50 Elapsed: 00:00:00.34
# Mc/sec: 1809.03
//
Query:       MMETSP1137-20121227|8029_1  [L=347]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (347 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        75  (0.0182838); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.14s 00:00:00.40 Elapsed: 00:00:00.43
# Mc/sec: 1065.12
//
Query:       MMETSP1137-20121227|8030_1  [L=332]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (332 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       128  (0.0312043); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.17s 00:00:00.42 Elapsed: 00:00:00.35
# Mc/sec: 1252.01
//
Query:       MMETSP1137-20121227|8031_1  [L=171]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.63    7.0   4.3       0.79    6.7   3.0    1.1  1  TIGR03752 conj_TIGR03752: integrating conjugative element protein, PFL_4705 family


Domain annotation for each model (and alignments):
>> TIGR03752  conj_TIGR03752: integrating conjugative element protein, PFL_4705 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   3.0   0.00019      0.79      85     144 ..      82     140 ..      68     150 .. 0.79

  Alignments for each domain:
  == domain 1    score: 6.7 bits;  conditional E-value: 0.00019
   TIGR03752  85 lkkenerlkkreesvderiqqaleaekkelkkekeqlkeeqakleelldelqkkledvaa 144
                 l+  +++l+++ ++   r+++al++ +++ ++++  l++ +++ ++++++l+++l++  +
  MMETSP1137-20121227|8031_1  82 LQ-AERHLRREAQQEVMRMRSALDSLQQKHRADQAYLNDMIQRQRQSIEQLTRQLQKDEE 140
                 44.34566666677778999*******************************999985433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (171 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       364  (0.0887372); expected 82.0 (0.02)
Passed bias filter:                      226  (0.0550951); expected 82.0 (0.02)
Passed Vit filter:                        37  (0.00901999); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.22u 0.18s 00:00:00.40 Elapsed: 00:00:00.40
# Mc/sec: 564.25
//
Query:       MMETSP1137-20121227|8033_1  [L=422]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (422 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       277  (0.067528); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.16s 00:00:00.47 Elapsed: 00:00:00.34
# Mc/sec: 1638.22
//
Query:       MMETSP1137-20121227|8034_1  [L=713]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (713 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        62  (0.0151146); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.12s 00:00:00.53 Elapsed: 00:00:00.87
# Mc/sec: 1081.70
//
Query:       MMETSP1137-20121227|8035_1  [L=64]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        64  (0.0156021); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.17s 00:00:00.29 Elapsed: 00:00:00.65
# Mc/sec: 129.96
//
Query:       MMETSP1137-20121227|8036_1  [L=555]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (555 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        65  (0.0158459); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.18s 00:00:00.56 Elapsed: 00:00:00.45
# Mc/sec: 1627.87
//
Query:       MMETSP1137-20121227|8037_1  [L=790]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (790 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       169  (0.0411994); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.49u 0.15s 00:00:00.64 Elapsed: 00:00:00.56
# Mc/sec: 1829.32
//
Query:       MMETSP1137-20121227|8038_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        85  (0.0207216); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.15s 00:00:00.27 Elapsed: 00:00:00.43
# Mc/sec: 162.68
//
Query:       MMETSP1137-20121227|8039_1  [L=317]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (317 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       147  (0.0358362); expected 82.0 (0.02)
Passed bias filter:                      127  (0.0309605); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.17s 00:00:00.44 Elapsed: 00:00:00.43
# Mc/sec: 973.04
//
Query:       MMETSP1137-20121227|8040_1  [L=237]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-25   87.0   0.4    2.5e-25   86.2   0.2    1.4  1  TIGR00062 L27: ribosomal protein L27


Domain annotation for each model (and alignments):
>> TIGR00062  L27: ribosomal protein L27
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.2   0.2   6.2e-29   2.5e-25       2      82 ..      91     172 ..      90     173 .. 0.97

  Alignments for each domain:
  == domain 1    score: 86.2 bits;  conditional E-value: 6.2e-29
   TIGR00062   2 askkgvGstkngrDseakrLGvkkadgqsvkaGeiivrqrGtklypGenvglGkDdtlfalsdGvvkfekkg.kkkrkkvsv 82 
                 a+kk++Gs  ++r s+ k LG+k  + q +k G+ii+rqrG +  +Genvg+G+D+tlfa+  G v+f  +   kkr++++v
  MMETSP1137-20121227|8040_1  91 ATKKSAGSGGSSRTSNPKMLGIKMHGDQLIKPGNIIMRQRGERYKAGENVGMGRDHTLFAMVAGYVEFTYQYfPKKRTFIHV 172
                 9*******************************************************************99988999999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (237 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        93  (0.0226719); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.22u 0.15s 00:00:00.37 Elapsed: 00:00:00.35
# Mc/sec: 893.75
//
Query:       MMETSP1137-20121227|8041_1  [L=120]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (120 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        88  (0.0214529); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.15s 00:00:00.30 Elapsed: 00:00:00.38
# Mc/sec: 416.81
//
Query:       MMETSP1137-20121227|8042_1  [L=792]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (792 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       159  (0.0387616); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.51u 0.18s 00:00:00.69 Elapsed: 00:00:00.59
# Mc/sec: 1771.79
//
Query:       MMETSP1137-20121227|8044_1  [L=954]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (954 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       157  (0.038274); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.60u 0.13s 00:00:00.73 Elapsed: 00:00:00.70
# Mc/sec: 1798.82
//
Query:       MMETSP1137-20121227|8045_1  [L=427]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (427 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        87  (0.0212092); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.14s 00:00:00.46 Elapsed: 00:00:00.50
# Mc/sec: 1127.19
//
Query:       MMETSP1137-20121227|8047_1  [L=254]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (254 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       121  (0.0294978); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.12s 00:00:00.34 Elapsed: 00:00:00.35
# Mc/sec: 957.86
//
Query:       MMETSP1137-20121227|8049_1  [L=298]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.7e-05   20.2   3.3    8.2e-05   19.4   2.3    1.3  1  TIGR00959 ffh: signal recognition particle protein


Domain annotation for each model (and alignments):
>> TIGR00959  ffh: signal recognition particle protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   2.3     2e-08   8.2e-05     311     424 ..     100     217 ..      92     220 .. 0.77

  Alignments for each domain:
  == domain 1    score: 19.4 bits;  conditional E-value: 2e-08
   TIGR00959 311 deeeakklaeklakeefdleDlleqlrqikklG...slskllkmlPglgkvkksekdldedekklkrieaiissmtkeErknpkilnasRkkRiakGsGtsvsd.vnklikefeqakk 424
                 de+ a+++++ ++ e+fd++ ++eql++  ++    +ls+ + +     +  ++ + ++e + +++++ aii+++t  E++  +++++  kkR++   G + +d +++l+ +++++k 
  MMETSP1137-20121227|8049_1 100 DESFANTVKNFCQIERFDFKVMREQLDEAIRVEerlPLSQRIGLKIEKMRGGEQGQAIEEMQATMRQQIAIIDALTAVEKRRISLIDKVAKKRVMDQLGLESEDpIDELVSQYSHMKM 217
                 4455555555566788999999999887555541115666666544344456888999*****************************************9887769********9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (298 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       177  (0.0431497); expected 82.0 (0.02)
Passed bias filter:                      104  (0.0253535); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.25u 0.13s 00:00:00.38 Elapsed: 00:00:00.49
# Mc/sec: 802.71
//
Query:       MMETSP1137-20121227|8050_1  [L=653]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (653 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       118  (0.0287665); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.16s 00:00:00.56 Elapsed: 00:00:00.56
# Mc/sec: 1512.09
//
Query:       MMETSP1137-20121227|8051_1  [L=743]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.15    8.7   7.0       0.27    7.8   4.8    1.3  1  TIGR00474 selA: L-seryl-tRNA selenium transferase
        2.9    4.9  20.0        4.6    4.2  13.9    1.2  1  TIGR03752 conj_TIGR03752: integrating conjugative element protein, PFL_4705 family
        5.2    3.0  10.7        7.4    2.5   7.4    1.1  1  TIGR04154 archaeo_STT3: oligosaccharyl transferase, archaeosortase system-associated
        9.1    2.3   7.5         12    1.8   5.2    1.1  1  TIGR00934 2a38euk: potassium uptake protein, Trk family


Domain annotation for each model (and alignments):
>> TIGR00474  selA: L-seryl-tRNA selenium transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   4.8   0.00027      0.27       6      95 ..     284     371 ..     280     377 .. 0.70

  Alignments for each domain:
  == domain 1    score: 7.8 bits;  conditional E-value: 0.00027
   TIGR00474   6 kvdklleeaelaelleelgrelvveavrevldelrekilageieeelakeelveevekkleekkksslrrviNatGvvlhT.NLGRallae 95 
                 ++ +ll++++ +++l++l++++ +++++++ ++l ++  +++++++   ++ +++ +++ ++ ++++  r+  ++Gv+ +   LGR++  +
  MMETSP1137-20121227|8051_1 284 QMSQLLQQQQQQQMLQQLHQQQAAQQLHAAQQQLAAQQEQAAQQQQ---AAQQQQQQQQQQQLEAPQQVRLDCGSGVIANSqDLGRSQQLQ 371
                 6788999999988888888888888887777777765555555544...4444444555556666777788899****986379**98655 PP

>> TIGR03752  conj_TIGR03752: integrating conjugative element protein, PFL_4705 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2  13.9    0.0045       4.6      74     140 ..     277     344 ..     265     377 .. 0.71

  Alignments for each domain:
  == domain 1    score: 4.2 bits;  conditional E-value: 0.0045
   TIGR03752  74 elaklekeNeklkkenerlkkreesvderiqqaleaekkelkkekeqlkeeqakleelldel.qkkle 140
                  +++l+++ ++l +++++ +  ++  +++ +q+l+a++++l++++eq++++q+ ++++ +++ q++le
  MMETSP1137-20121227|8051_1 277 AADTLQQQMSQLLQQQQQQQMLQQLHQQQAAQQLHAAQQQLAAQQEQAAQQQQAAQQQQQQQqQQQLE 344
                 56778888899998888888777778889999999999999999999998888666655444044444 PP

>> TIGR04154  archaeo_STT3: oligosaccharyl transferase, archaeosortase system-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   7.4    0.0073       7.4     625     701 ..     279     355 ..     261     396 .. 0.59

  Alignments for each domain:
  == domain 1    score: 2.5 bits;  conditional E-value: 0.0073
   TIGR04154 625 eetgsqtvsvnkqryyetmvarLhlfdGsaaepsallveveeeeaseqslkvetkeeeenaseaeaaaeadnaasaa 701
                 ++ ++q +++ +q+  + m+ +Lh+ +++++ ++a  + ++++e+++q+++  +++++++ +++ +a+++      +
  MMETSP1137-20121227|8051_1 279 DTLQQQMSQLLQQQQQQQMLQQLHQQQAAQQLHAAQQQLAAQQEQAAQQQQAAQQQQQQQQQQQLEAPQQVRLDCGS 355
                 45566777888899999999999999997776664444444444444444444444444444444444444333334 PP

>> TIGR00934  2a38euk: potassium uptake protein, Trk family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   5.2     0.012        12     194     310 ..     221     340 ..     185     385 .. 0.57

  Alignments for each domain:
  == domain 1    score: 1.8 bits;  conditional E-value: 0.012
   TIGR00934 194 elvkrdeqdsvhsdqnsedvksdtsadesis.....slrfdeskekkkstrvpsekfakrresrdidpedlyrsimmlqekheatakirdkiseanslaaesdeessesrriqekikrrlst 310
                 ++  +++q+ +h  q+s++++++  a   +s     ++ f + +++ ++ +v ++  a+  +++  ++ + ++ ++mlq+ h+++a+++ +   a++  a ++e++++ ++  ++ +++  +
  MMETSP1137-20121227|8051_1 221 QVHMHNQQNAPHIAQQSSQQDVQGMAPCGHSlmhypPQGFPTEQTEFRPRKVRAATAADTLQQQMSQLLQQQQQQQMLQQLHQQQAAQQLH--AAQQQLAAQQEQAAQQQQAAQQQQQQQQQ 340
                 4556677777777777777776666665555666666667777777777777666666666666666666666777777666655543333..11111111111111111111111111111 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (743 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       935  (0.227938); expected 82.0 (0.02)
Passed bias filter:                      332  (0.0809361); expected 82.0 (0.02)
Passed Vit filter:                        96  (0.0234032); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 1.04u 0.21s 00:00:01.25 Elapsed: 00:00:01.59
# Mc/sec: 616.78
//
Query:       MMETSP1137-20121227|8052_1  [L=133]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.9e-44  148.0   0.9    2.3e-44  147.7   0.6    1.1  1  TIGR01046 S10_Arc_S20_Euk: ribosomal protein S10
    7.6e-17   59.3   0.2    9.6e-17   58.9   0.1    1.1  1  TIGR01049 rpsJ_bact: ribosomal protein S10


Domain annotation for each model (and alignments):
>> TIGR01046  S10_Arc_S20_Euk: ribosomal protein S10
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  147.7   0.6   1.1e-47   2.3e-44       1      99 []      30     128 ..      30     128 .. 0.99

  Alignments for each domain:
  == domain 1    score: 147.7 bits;  conditional E-value: 1.1e-47
   TIGR01046   1 qkarikltstnvkslekvceqlkkiaektgvklsGPvplPtkrlrvvtrksPdGeGsktwdrwelrihkrlidleadervlrqimkikvpedveieiel 99 
                 +++ri+lts+nvk+lekvc++l+++a+ + +k++GPv+lPtk lr++trksP+GeG++twdr+e+rihkrlidl++++++++qi++i+++++ve+e+++
  MMETSP1137-20121227|8052_1  30 HRIRITLTSRNVKNLEKVCADLIRGAKDKRLKVKGPVRLPTKYLRITTRKSPCGEGTNTWDRFEMRIHKRLIDLHSPSEIVKQITSISIEPGVEVEVTI 128
                 79**********************************************************************************************985 PP

>> TIGR01049  rpsJ_bact: ribosomal protein S10
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.9   0.1   4.7e-20   9.6e-17       2      98 ..      31     127 ..      30     128 .. 0.94

  Alignments for each domain:
  == domain 1    score: 58.9 bits;  conditional E-value: 4.7e-20
   TIGR01049   2 kiriklksydkelldqsikkivetvkrtgakvkgpipLPtkkekytvlrsphvn.kksreqfeirthkRlidivevnsktldaLmkldlpagvdveik 98 
                 +iri l+s + ++l+++++ +++ +k    kvkgp+ LPtk  ++t  +sp  +  +  ++fe+r hkRlid+ +++ ++++ ++++++  gv+ve++
  MMETSP1137-20121227|8052_1  31 RIRITLTSRNVKNLEKVCADLIRGAKDKRLKVKGPVRLPTKYLRITTRKSPCGEgTNTWDRFEMRIHKRLIDLHSPS-EIVKQITSISIEPGVEVEVT 127
                 8**************************************************98725788**************9996.799**************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (133 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        94  (0.0229157); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.17u 0.12s 00:00:00.29 Elapsed: 00:00:00.28
# Mc/sec: 605.33
//
Query:       MMETSP1137-20121227|8053_1  [L=508]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (508 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       133  (0.0324232); expected 82.0 (0.02)
Passed bias filter:                       97  (0.023647); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.15s 00:00:00.50 Elapsed: 00:00:00.39
# Mc/sec: 1719.24
//
Query:       MMETSP1137-20121227|8054_1  [L=215]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00081   17.7   0.2      0.004   15.5   0.0    2.1  3  TIGR02196 GlrX_YruB: glutaredoxin-like protein, YruB-family
     0.0065   14.6   0.1      0.022   12.9   0.0    1.8  2  TIGR01126 pdi_dom: protein disulfide-isomerase domain
     0.0094   13.7   0.5       0.49    8.2   0.1    2.3  2  TIGR02443 TIGR02443: conserved hypothetical protein


Domain annotation for each model (and alignments):
>> TIGR02196  GlrX_YruB: glutaredoxin-like protein, YruB-family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.1       1.9   2.6e+03       9      17 ..      29      37 ..      27      44 .. 0.68
   2 ?   -1.4   0.0      0.55   7.5e+02      45      65 ..      89     109 ..      83     115 .. 0.74
   3 !   15.5   0.0   2.9e-06     0.004       3      60 ..     126     185 ..     125     192 .. 0.77

  Alignments for each domain:
  == domain 1    score: -3.1 bits;  conditional E-value: 1.9
   TIGR02196  9 wCppCkkak 17
                +C  Ck+++
  MMETSP1137-20121227|8054_1 29 ECVACKQLQ 37
                588888765 PP

  == domain 2    score: -1.4 bits;  conditional E-value: 0.55
   TIGR02196  45 klgqrsvPvivigekivvGFd 65 
                 k +q  vP++      v+GF+
  MMETSP1137-20121227|8054_1  89 KPEQPDVPQVLYTPPAVKGFS 109
                 566778999998877799997 PP

  == domain 3    score: 15.5 bits;  conditional E-value: 2.9e-06
   TIGR02196   3 kvYttpwCppCkkakeyLkskg...iafeeidvekdsaaaeellkklg.qrsvPvivigeki 60 
                 k+Y   wC +C + k+++ + g   i++   + ++d  + +++l k +  r+ P+ +i++k 
  MMETSP1137-20121227|8054_1 126 KMYGAYWCSHCFNQKNMFGAGGsriIEYV--ECAEDGYQSQRMLCKAKeIRGYPTWEINGKF 185
                 89****************99883335554..5667777777666555549********9985 PP

>> TIGR01126  pdi_dom: protein disulfide-isomerase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0      0.49   6.7e+02      26      46 ..      30      39 ..      13      63 .. 0.64
   2 !   12.9   0.0   1.6e-05     0.022      23      77 ..     130     181 ..     121     199 .. 0.83

  Alignments for each domain:
  == domain 1    score: -1.5 bits;  conditional E-value: 0.49
   TIGR01126 26 CGhCkklaPeyeklakelkke 46
                C  Ck+l           +++
  MMETSP1137-20121227|8054_1 30 CVACKQL-----------QSQ 39
                4445544...........333 PP

  == domain 2    score: 12.9 bits;  conditional E-value: 1.6e-05
   TIGR01126  23 aPWCGhCkklaPeyeklakelkkeeekvkiakvdataekelaskfkvsgfPtlkf 77 
                 a WC hC +    +   ++++ +    v+ a+   ++++ l++  +++g+Pt ++
  MMETSP1137-20121227|8054_1 130 AYWCSHCFNQKNMFGAGGSRIIE---YVECAEDGYQSQRMLCKAKEIRGYPTWEI 181
                 88*************99999985...699***99999***************876 PP

>> TIGR02443  TIGR02443: conserved hypothetical protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.0     0.011        15      28      43 ..      24      39 ..      11      53 .. 0.75
   2 !    8.2   0.1   0.00036      0.49      29      44 ..     151     166 ..     129     175 .. 0.77

  Alignments for each domain:
  == domain 1    score: 3.4 bits;  conditional E-value: 0.011
   TIGR02443 28 dielvECveCgyqeqr 43
                 +  +ECv C   + +
  MMETSP1137-20121227|8054_1 24 TLASIECVACKQLQSQ 39
                56678*****865555 PP

  == domain 2    score: 8.2 bits;  conditional E-value: 0.00036
   TIGR02443  29 ielvECveCgyqeqrk 44 
                 ie vEC e gyq qr 
  MMETSP1137-20121227|8054_1 151 IEYVECAEDGYQSQRM 166
                 89***********984 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (215 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        86  (0.0209654); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.20u 0.14s 00:00:00.34 Elapsed: 00:00:00.38
# Mc/sec: 746.78
//
Query:       MMETSP1137-20121227|8055_1  [L=194]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (194 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        97  (0.023647); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.14s 00:00:00.32 Elapsed: 00:00:00.66
# Mc/sec: 387.97
//
Query:       MMETSP1137-20121227|8056_1  [L=71]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (71 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        42  (0.0102389); expected 82.0 (0.02)
Passed bias filter:                       33  (0.00804486); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.16s 00:00:00.25 Elapsed: 00:00:00.30
# Mc/sec: 312.37
//
Query:       MMETSP1137-20121227|8057_1  [L=866]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (866 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       109  (0.0265724); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.54u 0.15s 00:00:00.69 Elapsed: 00:00:00.91
# Mc/sec: 1256.07
//
Query:       MMETSP1137-20121227|8058_1  [L=427]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (427 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       255  (0.0621648); expected 82.0 (0.02)
Passed bias filter:                      108  (0.0263286); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.16s 00:00:00.47 Elapsed: 00:00:00.48
# Mc/sec: 1174.15
//
Query:       MMETSP1137-20121227|8060_1  [L=328]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (328 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       123  (0.0299854); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.16s 00:00:00.43 Elapsed: 00:00:00.46
# Mc/sec: 941.14
//
Query:       MMETSP1137-20121227|8061_1  [L=39]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (39 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        51  (0.012433); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.17s 00:00:00.29 Elapsed: 00:00:00.28
# Mc/sec: 183.84
//
Query:       MMETSP1137-20121227|8062_1  [L=237]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (237 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        72  (0.0175524); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.14s 00:00:00.32 Elapsed: 00:00:00.32
# Mc/sec: 977.54
//
Query:       MMETSP1137-20121227|8063_1  [L=149]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (149 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        65  (0.0158459); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.09s 00:00:00.26 Elapsed: 00:00:00.72
# Mc/sec: 273.14
//
Query:       MMETSP1137-20121227|8064_1  [L=259]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-08   32.5   0.4      2e-08   32.0   0.3    1.2  1  TIGR03042 PS_II_psbQ_bact: photosystem II protein PsbQ


Domain annotation for each model (and alignments):
>> TIGR03042  PS_II_psbQ_bact: photosystem II protein PsbQ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.0   0.3   4.9e-12     2e-08      37     140 ..     158     258 ..     140     259 .] 0.88

  Alignments for each domain:
  == domain 1    score: 32.0 bits;  conditional E-value: 4.9e-12
   TIGR03042  37 kiqrqveeieaakdrldeLkslvakkdWvetrnlihGPlgevrremtylnqsLlpkdkkeakklakelkedLeklDeAAklqdkseaqkayqevaadldayldl 140
                 +  r+ +++ +  +r+  L+  ++ k W ++r  ++    ++r+ m+++n    + dk++a+   k+  ++ e+ D A  ++++  a+++y+ev + l+ay++l
  MMETSP1137-20121227|8064_1 158 V-SREKAAFLESSKRISSLQPKIDSKTWWFVRDEMRNQAYNMRSSMLAMND--VNPDKAAAEXAYKKYWSKVEQFDLACAKKESALANQKYAEVLEALKAYSAL 258
                 3.455667888999*******************************999988..57899*******************************************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (259 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       106  (0.0258411); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.22u 0.14s 00:00:00.36 Elapsed: 00:00:00.38
# Mc/sec: 899.61
//
Query:       MMETSP1137-20121227|8065_1  [L=555]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (555 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       109  (0.0265724); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.17s 00:00:00.52 Elapsed: 00:00:00.38
# Mc/sec: 1927.74
//
Query:       MMETSP1137-20121227|8066_1  [L=69]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (69 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        95  (0.0231594); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.16s 00:00:00.27 Elapsed: 00:00:00.56
# Mc/sec: 162.63
//
Query:       MMETSP1137-20121227|8067_1  [L=429]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.3e-09   33.2   0.0    4.4e-06   24.5   0.0    2.3  2  TIGR00372 cas4: CRISPR-associated protein Cas4
    9.3e-07   25.1   0.3    2.3e-05   20.5   0.2    2.1  1  TIGR02786 addB_alphas: double-strand break repair protein AddB
      3e-05   20.4   1.1      0.041   10.0   0.5    2.2  2  TIGR02784 addA_alphas: double-strand break repair helicase AddA
    0.00094   15.3   0.0     0.0015   14.6   0.0    1.4  1  TIGR03623 TIGR03623: probable DNA repair protein


Domain annotation for each model (and alignments):
>> TIGR00372  cas4: CRISPR-associated protein Cas4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.5   0.0    0.0014       1.4       1      44 [.     138     181 ..     138     193 .. 0.91
   2 !   24.5   0.0   4.3e-09   4.4e-06      53     179 ..     277     418 ..     243     419 .. 0.76

  Alignments for each domain:
  == domain 1    score: 6.5 bits;  conditional E-value: 0.0014
   TIGR00372   1 itvsdvkeylyCprklwleklggseeeseesmeeGrliheeaek 44 
                 +++s ++ +  Cp +  ++++ + +e+++e+++ G+ +h  +e+
  MMETSP1137-20121227|8067_1 138 MSPSSISLFKKCPLQFKYRHIDKLPEPTTEALATGTVAHTALER 181
                 57888999999****************************99987 PP

  == domain 2    score: 24.5 bits;  conditional E-value: 4.3e-09
   TIGR00372  53 vkeekevilkskkl.glkGviDvvleedg..elvpvEvksgkak.......kre.....ahklQllayallleerygvevskgyllyleegkkveveiseelrkkavkliek.....ieellegellPkpakksrkCkfCpyreiCl 179
                 ++ ek +  +++   + +GviD + ++ +  +l++ ++k+g+++         +     ++  Ql +yal+l++++ +++s+  ll+l  g ++e +++e++ + +++ ++      i  + ++   P+p   s+ C+ C+ ++iC+
  MMETSP1137-20121227|8067_1 277 MECEKRIQCSFPTIpEAVGVIDRLDSDSEegQLIVTDYKTGSSPksiysaaM-NeqireEAFEQLRIYALMLRQSG-ARASRLRLLFLGDGVELEESVTEQKLALTEEDLRAtwqrlIDAARSDAFEPSP---SPLCDWCAHKSICP 418
                 566777777887778899****9998777779**********9855555551.0566668889*************.7**********999999667777766666654432111125666667778855...69***********7 PP

>> TIGR02786  addB_alphas: double-strand break repair protein AddB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   0.2   2.2e-08   2.3e-05     786     931 ..     167     351 ..     131     356 .. 0.55

  Alignments for each domain:
  == domain 1    score: 20.5 bits;  conditional E-value: 2.2e-08
   TIGR02786 786 eaaerGtliHdilerfveeva.erlaadaaealkk.....iaaklleelnlppeaealwlprlervadav.....lewerarrleveeivaearakkelvaea..........................gitLsgraDRidl.tedgsaeilDYKTgapP....s...ekqvrallspQLaLeaalleega 931
                 ea + Gt+ H +ler  +  + +r+aa+a + +++     ++ + +  l  +p+ ++   p ++     v     +ewe++r++e+     +   +k+l + +                            +  g+ DR+d   e+g++ + DYKTg++P    s   ++q+r+  + QL + a++l++ +
  MMETSP1137-20121227|8067_1 167 EALATGTVAHTALERLFTLPPpQRTAAAAEDLFRAtwaklRLSEKFRPLFFKPKDSTEGTPDASSSSMHVtslsaAEWEHDREKEA-----AWG-QKSLQTLRtyfemenpelvnpmecekriqcsfptIPEAVGVIDRLDSdSEEGQLIVTDYKTGSSPksiySaamNEQIREEAFEQLRIYALMLRQSG 351
                 56666666666666644444303344444444443111112334455555555555555555444433331111123333322222.....111.111111111223333445555566666666554233789*******83578**************44431333579999*************9977 PP

>> TIGR02784  addA_alphas: double-strand break repair helicase AddA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.0   0.5     4e-05     0.041     890    1013 ..      73     199 ..      57     212 .. 0.76
   2 !    8.4   0.0   0.00012      0.12    1068    1116 ..     294     349 ..     280     354 .. 0.81

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 4e-05
   TIGR02784  890 aeageakqedelaeaeaakrlaltaedlkevkeeeeaaaeeaaealPawlsepvpaepklakpl..apSdlskaiekaeeeeaarsg.ktaaealalkrGtllHrLLqvLPdlaeeeredaarryla 1013
                  a+  +  + +++ ++ a+ r ++t+ +  +v+e +  a +++ ++ P+++ +     + + kpl  +pS  s   + + + +  +++   + ++ al+ Gt+ H  L++L  l++ +r +aa++ l 
  MMETSP1137-20121227|8067_1   73 AQYPHRACGAHMSHSAAIVRRHQTEGSSVRVRELSMVARRSSSTTAPNVVVTSDGGIRVNSKPLrmSPSSISLFKKCPLQFKYRHIDkLPEPTTEALATGTVAHTALERLFTLPPPQRTAAAAEDLF 199 
                  5555566777888888888888888889999998999999999999**99988776666666651167777777677777777777756788899***********************999876554 PP

  == domain 2    score: 8.4 bits;  conditional E-value: 0.00012
   TIGR02784 1068 sGriDRLvvded..rvlivDyKtnravPet......aeevpeaylrQlalYralLek 1116
                   G iDRL  d++  ++++ DyKt+   P++      +e++ e   +Ql +Y+ +L++
  MMETSP1137-20121227|8067_1  294 VGVIDRLDSDSEegQLIVTDYKTGSS-PKSiysaamNEQIREEAFEQLRIYALMLRQ 349 
                  59*****998876689********87.6652222226888999999*****999986 PP

>> TIGR03623  TIGR03623: probable DNA repair protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.0   1.5e-06    0.0015     740     783 ..     296     346 ..     247     362 .. 0.77

  Alignments for each domain:
  == domain 1    score: 14.6 bits;  conditional E-value: 1.5e-06
   TIGR03623 740 riDRiDrlad.gsrliiDYKTgaasvk...dwagerpee...pQLplYall 783
                  iDR+D+  + g+ ++ DYKTg+++ +   +  +e + e    QL +Yal+
  MMETSP1137-20121227|8067_1 296 VIDRLDSDSEeGQLIVTDYKTGSSPKSiysAAMNEQIREeafEQLRIYALM 346
                 69****86553888889******6665455444455554234499999988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (429 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        60  (0.014627); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.38u 0.17s 00:00:00.55 Elapsed: 00:00:00.54
# Mc/sec: 1048.58
//
Query:       MMETSP1137-20121227|8068_1  [L=447]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (447 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                      1007  (0.24549); expected 82.0 (0.02)
Passed bias filter:                      183  (0.0446124); expected 82.0 (0.02)
Passed Vit filter:                        64  (0.0156021); expected 4.1 (0.001)
Passed Fwd filter:                        14  (0.00341297); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.65u 0.19s 00:00:00.84 Elapsed: 00:00:00.74
# Mc/sec: 797.29
//
Query:       MMETSP1137-20121227|8069_1  [L=90]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (90 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        70  (0.0170648); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.14s 00:00:00.27 Elapsed: 00:00:00.44
# Mc/sec: 269.98
//
Query:       MMETSP1137-20121227|8070_1  [L=303]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (303 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        81  (0.0197465); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.17s 00:00:00.40 Elapsed: 00:00:01.15
# Mc/sec: 344.76
//
Query:       MMETSP1137-20121227|8071_1  [L=109]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (109 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        92  (0.0224281); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.15s 00:00:00.30 Elapsed: 00:00:00.27
# Mc/sec: 532.84
//
Query:       MMETSP1137-20121227|8072_1  [L=303]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (303 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       125  (0.0304729); expected 82.0 (0.02)
Passed bias filter:                      100  (0.0243784); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.15s 00:00:00.41 Elapsed: 00:00:00.42
# Mc/sec: 952.21
//
Query:       MMETSP1137-20121227|8073_1  [L=525]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   6.8e-118  392.1   5.0   7.8e-118  391.9   3.4    1.0  1  TIGR01350 lipoamide_DH: dihydrolipoyl dehydrogenase
    1.2e-84  282.8   4.5    1.5e-84  282.5   3.1    1.0  1  TIGR02053 MerA: mercuric reductase
    2.8e-73  244.8   3.8    3.5e-73  244.5   2.6    1.0  1  TIGR01424 gluta_reduc_2: glutathione-disulfide reductase
    7.1e-65  217.4   0.7    9.5e-65  217.0   0.5    1.1  1  TIGR03452 mycothione_red: mycothione reductase
    3.4e-57  192.4   1.1    4.3e-57  192.1   0.8    1.0  1  TIGR01421 gluta_reduc_1: glutathione-disulfide reductase
    8.8e-45  151.3   0.6    1.2e-44  150.9   0.4    1.1  1  TIGR01438 TGR: thioredoxin and glutathione reductase
    9.2e-36  121.2   3.3    1.5e-35  120.5   2.3    1.2  1  TIGR01423 trypano_reduc: trypanothione-disulfide reductase
    6.6e-17   59.2   0.0    1.3e-16   58.2   0.0    1.4  1  TIGR03385 CoA_CoA_reduc: CoA-disulfide reductase
    4.1e-11   40.0   0.1    1.5e-05   21.8   0.0    3.1  2  TIGR01292 TRX_reduct: thioredoxin-disulfide reductase
    1.1e-10   38.4   0.1      2e-10   37.6   0.0    1.5  1  TIGR02374 nitri_red_nirB: nitrite reductase [NAD(P)H], large subunit
    4.2e-07   26.7   0.6    0.00013   18.4   0.1    2.3  2  TIGR03140 AhpF: alkyl hydroperoxide reductase, F subunit
    2.2e-05   21.6   0.8     0.0014   15.5   1.0    2.3  2  TIGR03364 HpnW_proposed: FAD dependent oxidoreductase TIGR03364
     0.0019   15.1   4.7       0.11    9.3   1.7    3.0  3  TIGR03378 glycerol3P_GlpB: glycerol-3-phosphate dehydrogenase, anaerobic, B subunit
     0.0031   15.1   2.4      0.011   13.3   1.3    2.0  2  TIGR02032 GG-red-SF: geranylgeranyl reductase family
     0.0034   13.8   0.2       0.25    7.7   0.0    2.3  2  TIGR03143 AhpF_homolog: putative alkyl hydroperoxide reductase F subunit
     0.0072   12.9   0.0     0.0072   12.9   0.0    1.6  1  TIGR03026 NDP-sugDHase: nucleotide sugar dehydrogenase
  ------ inclusion threshold ------
      0.016   10.7   3.1      0.062    8.8   1.0    2.3  2  TIGR01372 soxA: sarcosine oxidase, alpha subunit family
      0.093    9.2  10.6       0.36    7.3   0.0    3.1  4  TIGR01813 flavo_cyto_c: flavocytochrome c
        3.9    4.0   9.0        3.6    4.1   0.0    2.7  3  TIGR00275 TIGR00275: flavoprotein, HI0933 family


Domain annotation for each model (and alignments):
>> TIGR01350  lipoamide_DH: dihydrolipoyl dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  391.9   3.4  3.6e-120  7.8e-118       2     460 ..      51     525 .]      50     525 .] 0.93

  Alignments for each domain:
  == domain 1    score: 391.9 bits;  conditional E-value: 3.6e-120
   TIGR01350   2 ydvvviGgGpgGYvaAiraaqlglkvalvekeklGGtClnvGCiPtKalLksaevveelke...akelgievenvkldlekllerkekvvkklvgGvkaLlkknkvevikGeaklldkkevevkkekkekkleakniiiAtGseprelplkleedekvvitseealelkevpeslvivGgGviGvEfasifaklGvkvtvielldrilpaldaevskvlkkklkkkg.vkiltnakvtevekeedevv......veakkk.evetleaekvLvavGrkpnleelgleklgveldergaikvdeelrtn......vpgiyaiGDvigklmLAhvAskegvvaaekiagkekseidykavPsviytePevasvGlteeqake....egievkvgkfpfaangkalaleetdGfvkvivdkktgeilGahivgaeaseliselalaveleltveelaktihpHPtlsEaikeaalaalgkaih 460
                 +d+v++G G gG  aA +a  +glkva+   e++GGtC+n+GC+P+KalL+++  v+e+++   ++elgi++ +v++d +k+ ++ ++  +k++g +++ l+  +v+v+  +++l+++++v++ +++  k+++akn+i+AtGs p  +p+ +++d+k+v ts+eal+l+ vp+ ++i+G+G+iG+Ef+ +++ lG++vt ie++++++p +d+++++++ + l +   ++ +tn   +ev   e  v+      + ak k  + t+e+++v+v+ Gr p  e+lgle+lgv +++ g+++vde++r        ++g++ iGD++gk+mLAh As++g+ a+e+++g+e+  ++++avP++ +t+Peva+vG tee a+e    eg+e+ v+  +f+an+kala +  dG++kvi+ k+t++++ +hi+g +a++li+e a a+e ++t++ela+t h+HPtl E++ ea++a lg+a h
  MMETSP1137-20121227|8073_1  51 FDLVIVGCGVGGHGAALHAVSKGLKVAVCAGEDVGGTCVNRGCVPSKALLAASGRVREMRDtkhLAELGIQAGEVSYDRAKVAAHANNLANKVKGNLEGSLTALGVTVFPNKGELVSPTSVKLVGSD--KTVSAKNVILATGSVPFVPPG-VKVDGKTVFTSDEALKLEWVPDWVAIIGSGYIGLEFSDVYTALGSEVTFIEAMPKMMPGFDKQIAQLADRLLIRPRaIDSYTNVFASEVIPGEPGVKpcvvkmIDAKTKePAATIEVDAVMVCTGRVPFSEGLGLEALGVGMNR-GFVQVDEKMRALdaegkpIEGLWCIGDLNGKMMLAHAASAQGISAVENMCGNEH-VLNHDAVPAACFTHPEVAMVGPTEEVAREraekEGYEIGVSTGNFKANSKALAEGAGDGIAKVIFRKDTHKLIAVHIIGLHAADLIQECANAIEHGVTLDELAMTTHTHPTLCEVLDEAFKAGLGRAAH 525
                 8****************************************************99888754222889**********************************************************99..68*******************.**********************************************************************99886559999999999998888888777766645555545789***************************998.*********974233333789******************************776.9***********************987752222679*************************************************************************************99998876 PP

>> TIGR02053  MerA: mercuric reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  282.5   3.1     7e-87   1.5e-84       1     447 [.      51     513 ..      51     518 .. 0.90

  Alignments for each domain:
  == domain 1    score: 282.5 bits;  conditional E-value: 7e-87
   TIGR02053   1 ydlviiGsGaaafaaaikaaelgakvvlverGilGGtCvnvGCvPSKallraaevaklakkas....vgllaaevevdleelleqkkevveelRkeKYedvlesydavdllegkakfkdektvkvdlgkevvgakrvliAtGarpavPeipGLkeaeyltseelleldkipeslvviGggaiavElaqlfarlGsevtllqrserllkeeepeisaaveellae.eGvevvksakvkavskrnggk.....klvtvekndskkeveadellvAtGRkpnvdgLnLekvgvklderGeilvdeklrtsnp......kiyAAGDvikglqlesvAakeGvvaAenalggaeakldlevlPkvvFtdPevAsvGltee....elakagievesrtvkleavpralinretrGliKlvaeketkkvlgvqvvaeeAaevineaalaikagltvddlidtlhvfltmaEglk 447
                 +dlvi+G G ++  aa++a+ +g kv++     +GGtCvn GCvPSKall+a+   + +++++     g++a ev+ d++++ ++++++ ++++ +  e  l  + +v ++  k++++++  vk+    ++v+ak+v++AtG+ p vP+   ++  +++ts+e+l+l+ +p+ +++iG+g+i++E++ ++  lGsevt ++   ++++  +++i++   +ll +   ++  +++ +++v  ++ g      k+++ ++++  +++e+d+++v tGR p  +gL+Le++gv + +rG+++vdek+r+  +      +++  GD  ++++l ++A+++G  a en+ g+ e+ l+ +++P++ Ft+PevA vG tee     ++k+g+e+ ++t + +a ++al+++   G+ K++  k+t+k+++v++++ +Aa++i+e a ai+ g+t+d+l+ t+h+++t+ E l 
  MMETSP1137-20121227|8073_1  51 FDLVIVGCGVGGHGAALHAVSKGLKVAVCAGEDVGGTCVNRGCVPSKALLAASGRVREMRDTKhlaeLGIQAGEVSYDRAKVAAHANNLANKVKGN-LEGSLTAL-GVTVFPNKGELVSPTSVKLVGSDKTVSAKNVILATGSVPFVPPGVKVDGKTVFTSDEALKLEWVPDWVAIIGSGYIGLEFSDVYTALGSEVTFIEAMPKMMPGFDKQIAQLADRLLIRpRAIDSYTNVFASEVIPGEPGVkpcvvKMIDAKTKEPAATIEVDAVMVCTGRVPFSEGLGLEALGVGM-NRGFVQVDEKMRALDAegkpieGLWCIGDLNGKMMLAHAASAQGISAVENMCGN-EHVLNHDAVPAACFTHPEVAMVGPTEEvareRAEKEGYEIGVSTGNFKANSKALAEGAGDGIAKVIFRKDTHKLIAVHIIGLHAADLIQECANAIEHGVTLDELAMTTHTHPTLCEVLD 513
                 59************************************************9987666666555566689999*****************9999776.66777888.5*****************999899999999************766667777***************************************************************998769********99999888777522222577888888999***************************66.58**********965422222279*****************************5.9**********************9996322257899*******************************************************************************9886 PP

>> TIGR01424  gluta_reduc_2: glutathione-disulfide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  244.5   2.6   1.6e-75   3.5e-73       2     441 ..      50     511 ..      49     514 .. 0.88

  Alignments for each domain:
  == domain 1    score: 244.5 bits;  conditional E-value: 1.6e-75
   TIGR01424   2 dydlfviGaGsGGvraarlaaalGakvaiaeedlvGGtcvirGcvPkkllvyasefaeeledak...gyGwevekaefdwkkllakkdkeiarlsglykkllakagvellegraelvdantvevledgktytaekiliavGgrpvkp...elPGaelaitsdeafdletlPksilvvGgGyiavefagifrGlGvkvtllyrgekilrgfdddvraelaeel.eerGirillktvlksiekvddGlkvtls.........kdeeivadvvllatGrvPnvkglgleaaGvelndagaiavdeysrt......svpsiyavGdvtdrinltPvaikeaaafaetefknnptkadhdlvatavfsqPevatvGlseeearekf...tddievyraefrPmkatlsGrqekillklvvdekddkvlGahvvGedaaeiiqlvaialkaGatkkdfdstvavhPssaee 441
                 d+dl ++G+G GG  aa  a ++G kva++  + vGGtcv rGcvP k l+ as    e++d+k   + G + +++ +d +k+ a+ ++   +++g     l   gv ++  ++elv +  v++  + kt++a+++++a+G+ p  p   ++ G     tsdea++le +P+ ++++G+Gyi+ ef++++  lG++vt +    k++ gfd+++ +  ++ l   r i   ++    ++   + G+k  +             +i+ d+v++ tGrvP  +glglea Gv +n +g ++vde  r+       +++++ +Gd   ++ l+  a  ++ + +e    +n    +hd v +a f++Peva+vG +ee are++   + +i v + +f+   ++l+      + k++  ++++k++ +h++G  aa++iq  a a+  G+t ++   t   hP++ e 
  MMETSP1137-20121227|8073_1  50 DFDLVIVGCGVGGHGAALHAVSKGLKVAVCAGEDVGGTCVNRGCVPSKALLAASGRVREMRDTKhlaELGIQAGEVSYDRAKVAAHANNLANKVKGNLEGSLTALGVTVFPNKGELVSPTSVKLVGSDKTVSAKNVILATGSVPFVPpgvKVDG-KTVFTSDEALKLEWVPDWVAIIGSGYIGLEFSDVYTALGSEVTFIEAMPKMMPGFDKQIAQLADRLLiRPRAIDSYTNVFASEVIPGEPGVKPCVVkmidaktkePAATIEVDAVMVCTGRVPFSEGLGLEALGVGMN-RGFVQVDEKMRAldaegkPIEGLWCIGDLNGKMMLAHAASAQGISAVEN-MCGNEHVLNHDAVPAACFTHPEVAMVGPTEEVARERAekeGYEIGVSTGNFKANSKALAEGAGDGIAKVIFRKDTHKLIAVHIIGLHAADLIQECANAIEHGVTLDELAMTTHTHPTLCEV 511
                 9*****************************************************999999998622268**************************************************************************95541223344.3568*******************************************************87766654256889888888888888888886533221233332223457999***********************997.6999999988863332225789*********************998886.56777899***********************9887551116789*************************************************************************9985 PP

>> TIGR03452  mycothione_red: mycothione reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  217.0   0.5   4.4e-67   9.5e-65       2     449 ..      50     516 ..      49     519 .. 0.84

  Alignments for each domain:
  == domain 1    score: 217.0 bits;  conditional E-value: 4.4e-67
   TIGR03452   2 hydliiiGtGsGn..silderfedkriaivekGtfGGtclnvGciptkmfvyaaevakevkesarlg.idaeidsvrwpdivsrvfedridpiaasGeeyrrgdktpnidvyesharfvgrktlr.tedgeeitadqvviaaGsrpvipeaiaesgvryytnedimrlpelpeslvivGgGyialefahvfsalGtkvtlvarsekllrkldediserftelakkkfdvrlgrnvtaaeq..dddg...vtleldd......GstveadvllvatGrvpngdlldaeaaGvevdedgrvkvdeyqrt......saegvfalGdvsspyqlkhvanaearvvkhnllkdedlkkadhdfvpaavftdpqiatvGlteqearea....GlditvkvqdygdvayGwamedteglakliadkdtGkllGahiiGaqassliqqlitalafgldarelarkqywihpalpevvenal 449
                 ++dl+i+G+G G   + l+   +  ++a++     GGtc+n Gc+p+k  + a+   +e++++++l+ +  +  +v ++       ++ +    ++  +   +  +  ++v+ ++ ++v++  ++ +++ ++++a++v++a+Gs p++p+ ++  g + +t+++ ++l+ +p+ + i+G+Gyi lef+ v+ alG++vt +    k++   d++i++   +l  +   + + +nv a+e    + g    ++++ d       +t+e d ++v tGrvp ++ l +ea Gv + + g v+vde  r+       +eg++ +Gd   + +l h a a+     +n+  +e+  + +hd vpaa ft+p +a+vG te+ are+    G++i v   ++   +   a    +g+ak+i  kdt kl+  hiiG +a+ liq+  +a+  g++  ela      hp+l ev+++a+
  MMETSP1137-20121227|8073_1  50 DFDLVIVGCGVGGhgAALHAVSKGLKVAVCAGEDVGGTCVNRGCVPSKALLAASGRVREMRDTKHLAeLGIQAGEVSYDRAKVAAHANNLANKVKG--NLEGSLTALGVTVFPNKGELVSPTSVKlVGSDKTVSAKNVILATGSVPFVPPGVKVDGKTVFTSDEALKLEWVPDWVAIIGSGYIGLEFSDVYTALGSEVTFIEAMPKMMPGFDKQIAQLADRLLIRPRAIDSYTNVFASEVipGEPGvkpCVVKMIDaktkepAATIEVDAVMVCTGRVPFSEGLGLEALGVGM-NRGFVQVDEKMRAldaegkPIEGLWCIGDLNGKMMLAHAASAQGISAVENMCGNEH--VLNHDAVPAACFTHPEVAMVGPTEEVARERaekeGYEIGVSTGNFKANSKALAEGAGDGIAKVIFRKDTHKLIAVHIIGLHAADLIQECANAIEHGVTLDELAMTT-HTHPTLCEVLDEAF 516
                 79*******99862245556667779*********************************9999876424445567888766555555444444443..4444455689************999983466677***********************************************************************************99998887777777777777666541123331124455433111112568999*************************.99*******99953222224689*******************99999999988775..589*********************99887444449********************************************************************986.68********9986 PP

>> TIGR01421  gluta_reduc_1: glutathione-disulfide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  192.1   0.8     2e-59   4.3e-57       2     445 ..      50     511 ..      49     514 .. 0.86

  Alignments for each domain:
  == domain 1    score: 192.1 bits;  conditional E-value: 2e-59
   TIGR01421   2 eydylviGGGsGGiasarraaeyGakallveekklGGtcvnvGcvPkkvmwyaaslaelle...daadyGfksekenkfnfkelkekrdayvdrlngiyqknlekekvelieGyaeftkdetvevngke..ytakhiliatGgkpsip..eniPGaelgldsdgffaleelPkrvvivGaGyiavelaGvlhglGsktdlvirrervlrsfdelisekvveel..ekaglevhklskvvkv...ektvegklvitledg....keiedvdeliwaiGrkpntkdlglekvgvkldekgyikvdeyqnt......nvegiyalGdvvGkveltPvaiaaGrklserlfegkedakldyenvPtvvfshPeigtvGltekeaiekyGke..nvkvykssftamyyaltkekqksrlklvcagkeekvvGlhiiGlgvdellqGfavaikmGatkadfdntvaihPtssee 445
                 ++d++++G G GG  +a  a + G k+++  ++++GGtcvn GcvP k +  a+  +  ++   + a+ G+++ +  +++ +++  + ++  ++++g  + +l+   v +     e+++ ++v++ g +  ++ak +++atG+ p +p   ++ G+    +sd+ ++le +P+ v+i+G+Gyi++e++ v+ +lGs+  ++    +++ +fd+ i++  +++l  +  +++ +++    +v   e  v+  +v ++++       + +vd+++ ++Gr+p  ++lgle +gv ++ +g+++vde   +       +eg++++Gd+ Gk+ l+  a a G    e + +++  + l+++ vP+  f+hPe++ vG te+ a e+  ke  ++ v   +f a   al++   +   k++   +  k++ +hiiGl +++l+q  a ai  G t  ++  t   hPt +e 
  MMETSP1137-20121227|8073_1  50 DFDLVIVGCGVGGHGAALHAVSKGLKVAVCAGEDVGGTCVNRGCVPSKALLAASGRVREMRdtkHLAELGIQAGEV-SYDRAKVAAHANNLANKVKGNLEGSLTALGVTVFPNKGELVSPTSVKLVGSDktVSAKNVILATGSVPFVPpgVKVDGK-TVFTSDEALKLEWVPDWVAIIGSGYIGLEFSDVYTALGSEVTFIEAMPKMMPGFDKQIAQL-ADRLliRPRAIDSYTNVFASEVipgEPGVKPCVVKMIDAKtkepAATIEVDAVMVCTGRVPFSEGLGLEALGVGMN-RGFVQVDEKMRAldaegkPIEGLWCIGDLNGKMMLAHAASAQGISAVENMCGNE--HVLNHDAVPAACFTHPEVAMVGPTEEVARERAEKEgyEIGVSTGNFKANSKALAEGAGDGIAKVIFRKDTHKLIAVHIIGLHAADLIQECANAIEHGVTLDELAMTTHTHPTLCEV 511
                 589**************************************************98888776333557899999855.59******************************************999877654599***************33333343.3478*****************************************************9864.5554113456666666555555222444554444444443444467889************************997.8******965431111115799*********************99999998765..68999***********************9998888446888999********************************************************************8875 PP

>> TIGR01438  TGR: thioredoxin and glutathione reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  150.9   0.4   5.4e-47   1.2e-44       2     465 ..      50     512 ..      49     518 .. 0.85

  Alignments for each domain:
  == domain 1    score: 150.9 bits;  conditional E-value: 5.4e-47
   TIGR01438   2 dydliviGgGsGGlaaakeaaklgakvllldfvkptpqGtkwGiGGtcvnvGcipkklmhqaallGkalkdskky...GwnveeqvkhdweklskavqdrikslnfsyrvalrekkvkyinayaelvdkdvikatdkkkkeeilsakrvliatGlrpkypddieGakelsitsddlfslkkvpGktlvvGasyvalecaGflaalgldvtvl.vrsillrGfdqdcavkvke.ylkeqGvkfkeqvlpkkvekvea.......kvlvkftdkdntieeeydtvlyaiGrkadlkklnlenvgvkvnk....ksgkiladelertnvpsiyavGdivedkleltpvaikaGklladrlfkdskeivdyenvpttvftpleygavGlseekavekyGeenvevfhseftpleysvpsrkdsskcyakvvclkdedervvGlhfvGpnagevtqGfavalrvgvkkkdldntigihpvsaeef 465
                 d+dl+++G+G GG  aa +a + g kv++         G+   +GGtcvn Gc+p k +  a+   ++++d+k+    G +  e v +d  k++   ++  +        +l    v+ +   +elv +  +k +   + ++++sak+v++atG  p +p  ++ + +   tsd+ + l+ vp    ++G++y+ le +   +alg +vt +     ++ Gfd+++a+      ++ + +    +v +  v   e        k++ +   k+ +++ e d+v+   Gr++  ++l+le++gv +n+      +k+ a + e   +++++ +Gd+ ++k+ l+  a   G + a     + +++++++ vp++ ft  e + vG +ee a e+  +e  e+  s  +    s +  +  +  +akv+  +++ ++++ +h++G  a++++q  a a+  gv+ ++l  t   hp+ +e++
  MMETSP1137-20121227|8073_1  50 DFDLVIVGCGVGGHGAALHAVSKGLKVAVC-------AGE--DVGGTCVNRGCVPSKALLAASGRVREMRDTKHLaelGIQAGE-VSYDRAKVAAHANNLANKVKGNLEGSLTALGVTVFPNKGELVSPTSVKLV---GSDKTVSAKNVILATGSVPFVPPGVKVDGKTVFTSDEALKLEWVPDWVAIIGSGYIGLEFSDVYTALGSEVTFIeAMPKMMPGFDKQIAQLADRlLIRPRAIDSYTNVFASEVIPGEPgvkpcvvKMI-DAKTKEPAATIEVDAVMVCTGRVPFSEGLGLEALGVGMNRgfvqVDEKMRALDAEGKPIEGLWCIGDL-NGKMMLAHAASAQG-ISAVENMCGNEHVLNHDAVPAACFTHPEVAMVGPTEEVARERAEKEGYEIGVSTGNFKANSKALAEGAGDGIAKVI-FRKDTHKLIAVHIIGLHAADLIQECANAIEHGVTLDELAMTTHTHPTLCEVL 512
                 8**************************985.......454..599************999999888999988865111555555.********99999888888888899999999*************999876...67899*****************99999999******************************************7624567899*******998651567899998888888888766555554543333.333366678899************************99973332578999999999***********6.78889998776666.6676777778899*********************************998877765555555566666789999987.577899*****************************************99976 PP

>> TIGR01423  trypano_reduc: trypanothione-disulfide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  120.5   2.3     7e-38   1.5e-35       4     467 ..      51     512 ..      48     516 .. 0.80

  Alignments for each domain:
  == domain 1    score: 120.5 bits;  conditional E-value: 7e-38
   TIGR01423   4 ydlvvigagsggleagwnaaslykkrvavvdlqkvhgppfyaalggtcvnvgcvpkklmvtgaqymdtlresagfg.weldaesvkanwkaliaaknkavldindsyedmfkdteglefflgfgaledknvvlvresadpkskvkerldaeyillatgswpqm...lkiegielcissneafyleeapkrvltvgggyisvefagifnaykavggkvdlayrndmilrgfdselrkeltkql..vangidvrtnenpakveknadgskhvvf........esgkeldvdvvmlaigrlprsqtlqldkvgveladkgaikvdeyskt......nvdniyaigdvtdrvmltpvainegaavvdtvfaskprktdhtkvasavfsippigvcglveeeaakkyek....vavyessftplmhnisgskykkfvvkivtdhadgevlgvhllgdsspeiiqavaiclklnakisdfyntigvhptsaeel 467
                 +dlv++g+g gg  a   a s    +vav              +ggtcvn gcvp k +++ +  + ++r++  +    ++a  v  +   + a  n+   +++   e+ ++ + g++ f   g l     v +  s        +++ a+ ++latgs p     +k++g+  + +s+ea+ le  p  v ++g gyi +ef+ +   y a g +v+++     ++ gfd+++ + l+++l  +   id  tn   + v     g k  v         e  ++++vd vm++ gr+p s+ l l+  gv + ++g ++vde  ++       ++ +++igd+ +++ml+  a  +g + v+ + ++     +h  v +a f+ p + ++g +ee a  + ek    + v    f    + ++       ++k++  +   +++ vh++g  + ++iq  a ++  +  + ++  t   hpt +e l
  MMETSP1137-20121227|8073_1  51 FDLVIVGCGVGGHGAALHAVSKG-LKVAVCAG---------EDVGGTCVNRGCVPSKALLAASGRVREMRDTKHLAeLGIQAGEVSYDRAKVAAHANNLANKVKGNLEGSLT-ALGVTVFPNKGELVSPTSVKLVGS-------DKTVSAKNVILATGSVPFVppgVKVDGK-TVFTSDEALKLEWVPDWVAIIGSGYIGLEFSDV---YTALGSEVTFIEAMPKMMPGFDKQIAQ-LADRLliRPRAIDSYTNVFASEVIPGEPGVKPCVVkmidaktkEPAATIEVDAVMVCTGRVPFSEGLGLEALGVGM-NRGFVQVDEKMRAldaegkPIEGLWCIGDLNGKMMLAHAASAQGISAVENMCGNE-HVLNHDAVPAACFTHPEVAMVGPTEEVARERAEKegyeIGVSTGNFKANSKALAEG-AGDGIAKVIFRKDTHKLIAVHIIGLHAADLIQECANAIEHGVTLDELAMTTHTHPTLCEVL 512
                 9*************999998854.45777643.........358****************9999999999987764134555556555544555556666677777777765.568888888888887777766543.......35788999*******9865333788886.5689**************************976...6778********************986.55554235689***********99999998865432222222277899**************************97.68******9988633322258899***************************9997.5789*********************9888777762211455555555555555443.356799**************************************************98865 PP

>> TIGR03385  CoA_CoA_reduc: CoA-disulfide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.2   0.0   6.1e-19   1.3e-16     107     421 ..     185     502 ..     171     513 .. 0.79

  Alignments for each domain:
  == domain 1    score: 58.2 bits;  conditional E-value: 6.1e-19
   TIGR03385 107 LilstGAkpkileiegieldavftlrnledaeaikkyldkkkvekvvviGgGyiglemvealkergkevtliersekilnkllDeeiakiveee.lekkeielrlneevksve.gee....kve.vltsgk.....vyqaDlvilavGvkPnselikssqlklg.kkGaikvnekfqtsveniyaiGDvaesknivtkkeelvPlAwaanklgsivaeniaGk.diefkGvlGtsivkfldltiaktGltenelk....k..lnidyktvevkakakanYYPgakdlllklivekdtkkilgaqavGkegvlkRidvlaaaikakltvkdltele 421
                 +il+tG  p +++   ++ ++vft ++          l ++  + v++iG+Gyigle  +  ++ g evt+ie   k+ ++ +D++ia+      ++ + i+  +n + ++v+ ge      v+ ++  +      ++++D+v++ +G  P se +    l +g ++G+++v+ek++  +    a G  +e    + +++  + lA aa  +g  + en+ G+ ++  +  + ++   f   ++a +G te+ ++    k  ++i ++t   ka++ka    ga d + k+i+ kdt+k++ + ++G + +   i+  a ai++++t ++l+++ 
  MMETSP1137-20121227|8073_1 185 VILATGSVPFVPPGVKVDGKTVFTSDEALK-------L-EWVPDWVAIIGSGYIGLEFSDVYTALGSEVTFIEAMPKM-MPGFDKQIAQLADRLlIRPRAIDSYTNVFASEVIpGEPgvkpCVVkMIDAKTkepaaTIEVDAVMVCTGRVPFSEGLGLEALGVGmNRGFVQVDEKMRALD----AEGKPIEGLWCIGDLNGKMMLAHAASAQGISAVENMCGNeHVLNHDAVPAA--CFTHPEVAMVGPTEEVAReraeKegYEIGVSTGNFKANSKAL-AEGAGDGIAKVIFRKDTHKLIAVHIIGLH-AADLIQECANAIEHGVTLDELAMTT 502
                 678888888888888888888887654322.......2.5667889*******************************9.*********987665257899*999999998887333322222332444443112225799***********9998877777776358*********9755....78*************************************888877777665..588999999998887654111142234556667778888875.578899999*******************9.6778*****************9875 PP

>> TIGR01292  TRX_reduct: thioredoxin-disulfide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   0.1   2.8e-05     0.006       2      39 ..      52      89 ..      51      95 .. 0.92
   2 !   21.8   0.0     7e-08   1.5e-05      97     295 ..     178     390 ..     136     393 .. 0.72

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 2.8e-05
   TIGR01292  2 dviiiGaGpaGltaaiYaaranlktlliegkeaggqlt 39
                d++i+G G +G+ aa+ a+ ++lk+++  g++ gg  +
  MMETSP1137-20121227|8073_1 52 DLVIVGCGVGGHGAALHAVSKGLKVAVCAGEDVGGTCV 89
                89********************************9876 PP

  == domain 2    score: 21.8 bits;  conditional E-value: 7e-08
   TIGR01292  97 keykakaviiAtGakarklgikgeeeflgrGvsyCavCDgalfknkevavvGggdsAveealyLskiakkVtlvhrrdkl.....raekillerlkkne.kievllnstveeik.Gdekves..vkikntktke.eeelkvdgvFiaiGhepntellkel...leldeegyivvdeemrT......sveGvfaaGDvrdkslrQvvtaagdGaiAals 295
                 k+++ak vi+AtG+ +    ++   +  g+ v +        +    va++G+g   +e + + + ++++Vt++    k+     +  + l++rl  ++  i+  +n  ++e+  G+  v+   vk+ + ktke   +++vd+v +  G  p +e l  +   + ++ +g+++vde+mr        +eG++  GD++  +++ +  a ++G+ A+ +
  MMETSP1137-20121227|8073_1 178 KTVSAKNVILATGSVP---FVPPGVKVDGKTVFTSDEALKLEWVPDWVAIIGSGYIGLEFSDVYTALGSEVTFIEAMPKMmpgfdKQIAQLADRLLIRPrAIDSYTNVFASEVIpGEPGVKPcvVKMIDAKTKEpAATIEVDAVMVCTGRVPFSEGLGLEalgVGMN-RGFVQVDEKMRAldaegkPIEGLWCIGDLNG-KMMLAHAASAQGISAVEN 390
                 5666666666666654...233334444444433222222335556799*************************999877333333445677888776658999***9999875277799862266678888886789**************999875444455565.6********8753333336***********9.667788899999999865 PP

>> TIGR02374  nitri_red_nirB: nitrite reductase [NAD(P)H], large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.6   0.0   9.2e-13     2e-10      84     268 ..     171     355 ..     105     406 .. 0.71

  Alignments for each domain:
  == domain 1    score: 37.6 bits;  conditional E-value: 9.2e-13
   TIGR02374  84 eksvitdagrtlsyDkLilatGsypfilPipGaDkkgvfvyrtieDldaleaaakrtkkaaviGgGLLGLeaaraLknlGldvsvielapllm...akqlDqtagrlLqr..elekkGltvlleke.tveivkesvekaerlrfkD.GssleadlvvlaaGirPrde.Laaea.GlkvndrrGiivndsmqtsd 268
                  k v    ++t+s  ++ilatGs+pf++P    D k vf+    ++   le         a+iG+G +GLe +     lG +v  ie +p++m   +kq+ q a rlL r   +++    +  e    +  vk  v k+   + k+   ++e+d v++++G  P  e L+ ea G+ +n r+ + v++ m++ d
  MMETSP1137-20121227|8073_1 171 VKLVG--SDKTVSAKNVILATGSVPFVPPGVKVDGKTVFTS---DEALKLEW---VPDWVAIIGSGYIGLEFSDVYTALGSEVTFIEAMPKMMpgfDKQIAQLADRLLIRprAIDSYTNVFASEVIpGEPGVKPCVVKMIDAKTKEpAATIEVDAVMVCTGRVPFSEgLGLEAlGVGMN-RGFVQVDEKMRALD 355
                 44443..46899999*************9777777766643...32223333...345579*******************************977779*********97611444444444433321333455554444444444325789*****99999888655488776577777.66677999998755 PP

>> TIGR03140  AhpF: alkyl hydroperoxide reductase, F subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.1   6.2e-07   0.00013     210     249 ..      48      88 ..      25      95 .. 0.81
   2 !    6.4   0.0    0.0028      0.61     355     475 ..     222     353 ..     170     377 .. 0.77

  Alignments for each domain:
  == domain 1    score: 18.4 bits;  conditional E-value: 6.2e-07
   TIGR03140 210 kekydvlvvGgGPagaaaaiyaarkGlkvalva.eriGGqv 249
                    +d+++vG G  g  aa++a+ kGlkva+ a e +GG  
  MMETSP1137-20121227|8073_1  48 DVDFDLVIVGCGVGGHGAALHAVSKGLKVAVCAgEDVGGTC 88 
                 4579***************************9747799865 PP

  == domain 2    score: 6.4 bits;  conditional E-value: 0.0028
   TIGR03140 355 vaviGGGnsGieaaidlaGivehvtvlefadelka..dkv...lveklksl.snvdiltsaktkeivgdgdkvtg..lkykdrssee.ekkleldGvfvqiGlvpnteflk.davel.nrrGeividergrt 475
                 va+iG G  G+e +   + + ++vt +e + ++    dk    l ++l  +   +d  t++ + e++  +  v+   +k+ d +++e   ++e+d v+v  G vp +e l  +a+ +  +rG + +de+ r+
  MMETSP1137-20121227|8073_1 222 VAIIGSGYIGLEFSDVYTALGSEVTFIEAMPKMMPgfDKQiaqLADRLLIRpRAIDSYTNVFASEVIPGEPGVKPcvVKMIDAKTKEpAATIEVDAVMVCTGRVPFSEGLGlEALGVgMNRGFVQVDEKMRA 353
                 9***********9988999**********99986322443122555555442579**********99887777751155556555542689**************999875344444145788888888764 PP

>> TIGR03364  HpnW_proposed: FAD dependent oxidoreductase TIGR03364
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   1.0   6.7e-06    0.0014       2      30 ..      52      80 ..      51     123 .. 0.85
   2 ?    3.1   0.0     0.039       8.4       3      33 ..     222     252 ..     220     256 .. 0.91

  Alignments for each domain:
  == domain 1    score: 15.5 bits;  conditional E-value: 6.7e-06
   TIGR03364  2 dvvvvGaGivGlahAlaaarrGlkVtvie 30
                d+v+vG G+ G   Al+a+++GlkV+v  
  MMETSP1137-20121227|8073_1 52 DLVIVGCGVGGHGAALHAVSKGLKVAVCA 80
                99************************975 PP

  == domain 2    score: 3.1 bits;  conditional E-value: 0.039
   TIGR03364   3 vvvvGaGivGlahAlaaarrGlkVtvierss 33 
                 v+++G+G +Gl ++   ++ G +Vt ie  +
  MMETSP1137-20121227|8073_1 222 VAIIGSGYIGLEFSDVYTALGSEVTFIEAMP 252
                 89*************************9766 PP

>> TIGR03378  glycerol3P_GlpB: glycerol-3-phosphate dehydrogenase, anaerobic, B subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.3   1.7    0.0005      0.11       1      30 [.      51      80 ..      51      89 .. 0.94
   2 ?    0.0   0.0      0.33        70     305     320 ..     176     191 ..     163     207 .. 0.85
   3 ?    3.7   0.0     0.025       5.5     367     409 ..     345     388 ..     340     398 .. 0.75

  Alignments for each domain:
  == domain 1    score: 9.3 bits;  conditional E-value: 0.0005
   TIGR03378  1 fDviiiGgGlaGlscalrlaeaGkktaiia 30
                fD +i+G G+ G  +al+++ +G k+a+ a
  MMETSP1137-20121227|8073_1 51 FDLVIVGCGVGGHGAALHAVSKGLKVAVCA 80
                9*************************9975 PP

  == domain 2    score: 0.0 bits;  conditional E-value: 0.33
   TIGR03378 305 edipleakqfvlasGs 320
                 +d +++ak+++la+Gs
  MMETSP1137-20121227|8073_1 176 SDKTVSAKNVILATGS 191
                 6999***********9 PP

  == domain 3    score: 3.7 bits;  conditional E-value: 0.025
   TIGR03378 367 vktdaklrvs.kagktienLyaiGavlsgydpieeGcGsGvavs 409
                 v++d+k+r+  ++gk ie L++iG + ++    +  +  G++ +
  MMETSP1137-20121227|8073_1 345 VQVDEKMRALdAEGKPIEGLWCIGDLNGKMMLAHAASAQGISAV 388
                 8999***997268***********98777666666666666655 PP

>> TIGR02032  GG-red-SF: geranylgeranyl reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   1.3   4.9e-05     0.011       1      34 [.      51      84 ..      51     135 .. 0.88
   2 ?   -0.6   0.0      0.87   1.9e+02     128     147 ..     173     191 ..     146     215 .. 0.81

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 4.9e-05
   TIGR02032  1 yDvvvvGaGpaGssaAlrlakkGlrVlllekkel 34
                +D+v+vG G  G  aAl++ +kGl+V++   ++ 
  MMETSP1137-20121227|8073_1 51 FDLVIVGCGVGGHGAALHAVSKGLKVAVCAGEDV 84
                7*************************98766655 PP

  == domain 2    score: -0.6 bits;  conditional E-value: 0.87
   TIGR02032 128 vredekkevtakivigAdGa 147
                 + + + k+v+ak vi A+G+
  MMETSP1137-20121227|8073_1 173 LVG-SDKTVSAKNVILATGS 191
                 333.5689**********98 PP

>> TIGR03143  AhpF_homolog: putative alkyl hydroperoxide reductase F subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   0.1     0.017       3.8       5      42 ..      51      88 ..      48     120 .. 0.91
   2 !    7.7   0.0    0.0012      0.25     146     287 ..     222     375 ..     169     392 .. 0.73

  Alignments for each domain:
  == domain 1    score: 3.8 bits;  conditional E-value: 0.017
   TIGR03143  5 ydlvviGgGpaglsaGiyagraklkvliiekdelGGqi 42
                +dlv++G G  g  a ++a    lkv +   +++GG  
  MMETSP1137-20121227|8073_1 51 FDLVIVGCGVGGHGAALHAVSKGLKVAVCAGEDVGGTC 88
                7**********************************974 PP

  == domain 2    score: 7.7 bits;  conditional E-value: 0.0012
   TIGR03143 146 vlviGgGfaaaeeavfltkyakkvtvivrepdft..ca...kaiaekvkanPk.ievkfnvelkevt.GddvlreakfvnnatGeeteykakkdegtfGvfvfvGyvPsselfk.gkveld.erGyvvtnedlet......nveGvyaaGdlrvkel 287
                 v +iG+G+   e +   t  +++vt i   p++    +   + +a++ + +P+ i+   nv   ev  G+  ++   ++   +  ++e  a  +     v+v  G vP se +  + + +  +rG+v  +e++++       +eG++ +Gdl  k +
  MMETSP1137-20121227|8073_1 222 VAIIGSGYIGLEFSDVYTALGSEVTFIEAMPKMMpgFDkqiAQLADRLLIRPRaIDSYTNVFASEVIpGEPGVKPCVVKMIDAK-TKEPAATIEV--DAVMVCTGRVPFSEGLGlEALGVGmNRGFVQVDEKMRAldaegkPIEGLWCIGDLNGKMM 375
                 679***********999**********887765422340023457889999975788889999998879999988766554433.3333322222..359*********996541444443259*********8643333369*********99875 PP

>> TIGR03026  NDP-sugDHase: nucleotide sugar dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.9   0.0   3.3e-05    0.0072       3      40 ..     222     259 ..     220     272 .. 0.84

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 3.3e-05
   TIGR03026   3 iavvGlGYvGlplaallaekgheVvgvDidkekvekln 40 
                 +a++G GY+Gl  + ++++ g eV++++   +      
  MMETSP1137-20121227|8073_1 222 VAIIGSGYIGLEFSDVYTALGSEVTFIEAMPKMMPGFD 259
                 89*************************98877665555 PP

>> TIGR01372  soxA: sarcosine oxidase, alpha subunit family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   1.0   0.00029     0.062     169     207 ..      51      88 ..      37     143 .. 0.87
   2 ?    0.9   0.0     0.072        16     385     479 ..     291     392 ..     272     426 .. 0.72

  Alignments for each domain:
  == domain 1    score: 8.8 bits;  conditional E-value: 0.00029
   TIGR01372 169 cDvLvvGaGpaGLaaAraAaraGarvilvdeqaeaGGsl 207
                  D+++vG G  G  aA+ A ++G++v ++  +  +GG+ 
  MMETSP1137-20121227|8073_1  51 FDLVIVGCGVGGHGAALHAVSKGLKVAVCAGE-DVGGTC 88 
                 599************************99876.456654 PP

  == domain 2    score: 0.9 bits;  conditional E-value: 0.072
   TIGR01372 385 kkrvesvkvarvdlstaesgaeeeleaDallvsgG...wsPvvhL....asqakgklawdeeraaFlp.deavqelllaGAvnglfglaaa.ladgaaagaaaa 479
                 +  v+ + v+ +d +t+e    +++e+Da++v +G   +s  ++L    ++ ++g ++ de+++a  + +++ ++l + G +ng + la a  a+g +a++++ 
  MMETSP1137-20121227|8073_1 291 EPGVKPCVVKMIDAKTKEP--AATIEVDAVMVCTGrvpFSEGLGLealgVGMNRGFVQVDEKMRALDAeGKPIEGLWCIGDLNGKMMLAHAaSAQGISAVENMC 392
                 5567777788888887554..459**********9444444677733233578999999999999866156899999999999999988651456666665544 PP

>> TIGR01813  flavo_cyto_c: flavocytochrome c
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   2.0    0.0054       1.2       1      27 [.      52      78 ..      52      90 .. 0.85
   2 ?   -2.3   0.0       1.4     3e+02     173     189 ..     174     190 ..      79     191 .. 0.49
   3 ?   -1.8   0.0      0.99   2.1e+02       2      33 ..     222     252 ..     222     254 .. 0.84
   4 ?    7.3   0.0    0.0017      0.36     388     420 ..     342     373 ..     337     390 .. 0.89

  Alignments for each domain:
  == domain 1    score: 5.6 bits;  conditional E-value: 0.0054
   TIGR01813  1 dvvvvGsGlAGlsaaleakkaglaevv 27
                d+v+vG G+ G+ aal+a ++gl+ +v
  MMETSP1137-20121227|8073_1 52 DLVIVGCGVGGHGAALHAVSKGLKVAV 78
                78********************65544 PP

  == domain 2    score: -2.3 bits;  conditional E-value: 1.4
   TIGR01813 173 gkkikikaakaVvlatG 189
                  ++ k++ ak+V+latG
  MMETSP1137-20121227|8073_1 174 VGSDKTVSAKNVILATG 190
                 33445566677777776 PP

  == domain 3    score: -1.8 bits;  conditional E-value: 0.99
   TIGR01813   2 vvvvGsGlAGlsaaleakkaglaevvvleKap 33 
                 v ++GsG  Gl  +   ++ g  ev  +e +p
  MMETSP1137-20121227|8073_1 222 VAIIGSGYIGLEFSDVYTALG-SEVTFIEAMP 252
                 679********9999888888.8888888776 PP

  == domain 4    score: 7.3 bits;  conditional E-value: 0.0017
   TIGR01813 388 mGGvkintkaeVldensekpikgLfAaGEvtGg 420
                  G v++++k + ld+++ kpi+gL+  G++ G 
  MMETSP1137-20121227|8073_1 342 RGFVQVDEKMRALDAEG-KPIEGLWCIGDLNGK 373
                 5789*************.***********9995 PP

>> TIGR00275  TIGR00275: flavoprotein, HI0933 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   2.5     0.078        17       2      27 ..      54      79 ..      53      87 .. 0.90
   2 ?    4.1   0.0     0.017       3.6     137     161 ..     169     193 ..     124     209 .. 0.68
   3 ?   -1.7   0.0      0.97   2.1e+02       1      33 [.     222     254 ..     222     255 .. 0.92

  Alignments for each domain:
  == domain 1    score: 1.9 bits;  conditional E-value: 0.078
   TIGR00275  2 iiiGgGaaGlmaAitaaeegakVlll 27
                +i+G+G  G  aA++a ++g+kV++ 
  MMETSP1137-20121227|8073_1 54 VIVGCGVGGHGAALHAVSKGLKVAVC 79
                8**********************997 PP

  == domain 2    score: 4.1 bits;  conditional E-value: 0.017
   TIGR00275 137 ekfevetekkeleakkvilatGgks 161
                 + +++  ++k+++ak+vilatG+  
  MMETSP1137-20121227|8073_1 169 TSVKLVGSDKTVSAKNVILATGSVP 193
                 3444555999************955 PP

  == domain 3    score: -1.7 bits;  conditional E-value: 0.97
   TIGR00275   1 viiiGgGaaGlmaAitaaeegakVlllEknkki 33 
                 v+iiG G  Gl  +    + g +V+ +E++ k+
  MMETSP1137-20121227|8073_1 222 VAIIGSGYIGLEFSDVYTALGSEVTFIEAMPKM 254
                 78**********9999999*********99875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (525 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       211  (0.0514383); expected 82.0 (0.02)
Passed bias filter:                      152  (0.0370551); expected 82.0 (0.02)
Passed Vit filter:                        48  (0.0117016); expected 4.1 (0.001)
Passed Fwd filter:                        19  (0.00463189); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              19  [number of targets reported over threshold]
# CPU time: 0.71u 0.18s 00:00:00.88 Elapsed: 00:00:00.84
# Mc/sec: 824.93
//
Query:       MMETSP1137-20121227|8074_1  [L=659]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.7e-21   74.3   0.0    2.2e-21   73.9   0.0    1.1  1  TIGR02160 PA_CoA_Oxy5: phenylacetate-CoA oxygenase/reductase, PaaK subunit
    1.9e-15   54.4   0.0    6.8e-14   49.3   0.0    2.3  2  TIGR04025 PPOX_FMN_DR2398: pyridoxamine 5'-phosphate oxidase, FMN-binding family
    3.2e-09   34.0   0.0    6.4e-09   33.0   0.0    1.4  1  TIGR01941 nqrF: NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit


Domain annotation for each model (and alignments):
>> TIGR02160  PA_CoA_Oxy5: phenylacetate-CoA oxygenase/reductase, PaaK subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.9   0.0   1.6e-24   2.2e-21       6     242 ..     413     658 ..     409     659 .] 0.80

  Alignments for each domain:
  == domain 1    score: 73.9 bits;  conditional E-value: 1.6e-24
   TIGR02160   6 vaevrrltadaveisfevPeelaedyrfepGqhltlkaeldGeelrrsysicdavadg.....eirvavkkieGGlfstwaneeira.Gdt...levmaPqGrftskldaerakhyvavaaGsGitPilaivktvlaaepkstft.....lvyanrrsasvmfaeeladlkdkypqrfallhvlsreereaellsGrldgeklkalld.sli...evdevdeaflcGPaalvddaedal.kalGvdsekvhlelft 242
                 + + + +t+d  + +f  P ++    +f  Gq+ tl+ +l  e l rs++i ++v+ g     + +++vk+ +GG+ + w+ +++ +  dt   + + a +G f        a +++ +a G GitP++++++t  ++  + +++     l+y+ r++++++f  el  + ++ pq f+ + +l+re ++      r+d+  l+  ++  ++    v+   ++++cGPa+l   + d+l ++lG++++++h + f+
  MMETSP1137-20121227|8074_1 413 LLKKEVETSDVQTFTFRAPRPV----DFSAGQYATLRFQLGDETLVRSWTISSGVSAGdppsaQFQLTVKRRDGGRVTPWMLDQLSPtADTtalISLAAVEGDFVVGDAQRDASRFLFIAGGIGITPLMSLLRTLRSQPLRRRLQlppivLLYTARTHKELVFDAELRTMSERLPQ-FEYVPLLTREGEQR-----RIDAAVLRDAVGaDVLadfAVRSRVQVYMCGPAQLQRMVADTLvQGLGLPESNLHADSFE 658
                 5566789999999999999986....79************************9987651222257899****************8752444222566789******999999*********************9877776776542222279*********************997.9999*****99876.....555555554332022211146667789********9988766549**********99996 PP

>> TIGR04025  PPOX_FMN_DR2398: pyridoxamine 5'-phosphate oxidase, FMN-binding family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.0     0.012        17       7      45 ..      97     136 ..      94     160 .. 0.76
   2 !   49.3   0.0   4.9e-17   6.8e-14      18     144 ..     258     378 ..     246     383 .. 0.83

  Alignments for each domain:
  == domain 1    score: 2.4 bits;  conditional E-value: 0.012
   TIGR04025   7 ygepseralkKvldrldehyrefieaspflvlatv.daeg 45 
                 y+e++e a +  ++ + +++r+f ++ pf++++t  ++eg
  MMETSP1137-20121227|8074_1  97 YEETQEWAPAVIRNVMPDQHRQFFTEQPFFIMSTLsGPEG 136
                 6666666777777888999***************615555 PP

  == domain 2    score: 49.3 bits;  conditional E-value: 4.9e-17
   TIGR04025  18 vldrldehyrefieaspflvlatvdaegkldvsPrGdapgfvkvlddktlllPdrrGNnridslrnivedprvgllflvpgv..eetlRvnGtAeisadaelleslavegkapklvlvvevee.vyfhCa 144
                 + +++de + ++++++  +++a+ +a+  +dvs rG++pgf + +d +tl+ Pd +GN+  ++l n+v + r +l+  vp +  +++  + GtAei  d +++          +  ++++ve+ vy++Ca
  MMETSP1137-20121227|8074_1 258 TFKEMDECVLSLLRRADTFFIASGNANIGADVSHRGGNPGFLRAVDSSTLMWPDYKGNEMYQTLGNLVVNARTALF--VPDFesRDVAVIVGTAEILFDRRYMPLA-------RRTVQLKVEQvVYMRCA 378
                 567899999999****9999999999988*******************************************9985..66551168999**********9987543.......34455555542477776 PP

>> TIGR01941  nqrF: NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.0   0.0   4.7e-12   6.4e-09     262     403 ..     510     657 ..     498     658 .. 0.79

  Alignments for each domain:
  == domain 1    score: 33.0 bits;  conditional E-value: 4.7e-12
   TIGR01941 262 Geffvkdtd...aelvfigGGaGmaplrshildllkrlkskrk.....isfwyGarskrevfyeedfdeleaendnfkyhvalsdplpednwtGytgfihnvlyenylkdhdapediefymcGpplmnaavik.lledlGverenillddf 403
                 G+f v d +   + ++fi+GG G++pl s +l  l+++  +r+     i + y ar+++e +++ + +++  + + f+y   l+    e      ++ + +++  + l d+     ++ ymcGp+  +  v + l++ lG++++n+  d f
  MMETSP1137-20121227|8074_1 510 GDFVVGDAQrdaSRFLFIAGGIGITPLMS-LLRTLRSQPLRRRlqlppIVLLYTARTHKELVFDAELRTMSERLPQFEYVPLLTR-EGEQR-RIDAAVLRDAVGADVLADFAVRSRVQVYMCGPAQLQRMVADtLVQGLGLPESNLHADSF 657
                 666666654111569**********9987.5677777777777222225579***************************776664.44443.33567899**************************999998626688*******999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (659 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        89  (0.0216967); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.45u 0.17s 00:00:00.62 Elapsed: 00:00:00.87
# Mc/sec: 999.78
//
Query:       MMETSP1137-20121227|8075_1  [L=450]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.4e-42  142.0   2.7    3.7e-41  139.2   0.3    2.5  2  TIGR02152 D_ribokin_bact: ribokinase
    6.6e-12   42.9   2.7    3.7e-11   40.4   1.9    2.3  1  TIGR03828 pfkB: 1-phosphofructokinase
    1.8e-11   41.3   3.7    1.2e-10   38.7   2.5    2.3  1  TIGR03168 1-PFK: hexose kinase, 1-phosphofructokinase family
    4.1e-06   23.9   1.9    5.4e-05   20.3   0.7    2.7  2  TIGR02198 rfaE_dom_I: bifunctional protein RfaE, domain I


Domain annotation for each model (and alignments):
>> TIGR02152  D_ribokin_bact: ribokinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.1     0.019        19       1      19 [.      66      84 ..      66     100 .. 0.75
   2 !  139.2   0.3   3.6e-44   3.7e-41      30     297 ..     141     435 ..     130     436 .. 0.80

  Alignments for each domain:
  == domain 1    score: 2.2 bits;  conditional E-value: 0.019
   TIGR02152  1 ivvvGSinvDlvlrvkrlp 19
                ++vvGSinvDl    ++ +
  MMETSP1137-20121227|8075_1 66 VLVVGSINVDLYQXLSSAA 84
                79********987766554 PP

  == domain 2    score: 139.2 bits;  conditional E-value: 3.6e-44
   TIGR02152  30 fkiaaGGKGANQAvaaarlgaevsmigkvGkDefg..eellenlkkegidteyvkkvkktstGvAlilvdeegeNsIvvvaGaneeltpedvkaa.eekikesdlvllQlEipletveealkiakkagvkvllnPAPaekkldeellslvdiivpNetEaeiLtgieve.....dl....edaekaaekllekgv..kaviitlGskGallvskd........ekklipalkv.....kavDttaAGDtFigalavaLaeg.ksledavrfanaaaalsVtrkGaqssiPtkeeve 297
                 f++ +GGKGAN A aa +   +++++++ G+ + +  ++ll +lk+ g   ++ +++ + +tG+A+il+ e+ +N+I++  Gan+ + pe ++a  + +i+e+  v+lQ E+p+++++e++++a+k g+ v+++    ++ +d ell ++++i pNetE+ +++g++++     +l    +++++  +++++ g    +v++tlG  Ga+   +         +++ + ++       k  Dtt+AGD+F g++ +aL    +s+++a++ a+aaa+lsV  +Ga +s+Pt++ +e
  MMETSP1137-20121227|8075_1 141 FEQKTGGKGANXAAAAGQT-FRCELVCNFGRESEAsnKALLADLKEFGXVNTSRSQTVDGPTGTAYILLXEDFDNAILLLGGANQAWAPEPLHAGlQVAISECVAVMLQREVPEHVNREVANAARKCGKPVIMDVGGTDAPVDVELLPHITMIAPNETELTFISGVATSvagrpSLslvrQAVSSLKARFSAAGNsdVEVLVTLGGMGAVHFASAwacgsdtaHETRVGTFPLgtpdgKPKDTTGAGDCFRGSFIAALYGRgNSVAAALTWAAAAASLSVEVEGAMPSMPTEKAIE 435
                 78899********887766.56********987762256899****98655555666799********************************9862668*****************************************************************998541122233111133444445555667644469********986544332311122334444443333333789*************99998665*****************************99887 PP

>> TIGR03828  pfkB: 1-phosphofructokinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.4   1.9   3.6e-14   3.7e-11     137     291 ..     247     427 ..     139     440 .. 0.75

  Alignments for each domain:
  == domain 1    score: 40.4 bits;  conditional E-value: 3.6e-14
   TIGR03828 137 lPrgvpedlyaelikllrekgakvilDtsg..eaLlkvlkakplliKPNkeEleellgrelkteee.........vieaarkllekgve..nvlislGadGallvtk.........e....galfakapkievkstvGAGDsmvAgfllale.kglsleealrlavAvgaaaassegtelpd 291
                 l r vpe++  e+++++r+ g++vi+D+ g  +++   l  + ++i PN+ El+ + g + +  ++         v ++  ++ ++g +  +vl++lG+ Ga+ + +         +    g++   +p+++ k+t+GAGD   + f++al+ +g+s+++al++a A+++ ++  eg ++p+
  MMETSP1137-20121227|8075_1 247 LQREVPEHVNREVANAARKCGKPVIMDVGGtdAPVDVELLPHITMIAPNETELTFISGVATSVAGRpslslvrqaVSSLKARFSAAGNSdvEVLVTLGGMGAVHFASawacgsdtaHetrvGTFPLGTPDGKPKDTTGAGDCFRGSFIAALYgRGNSVAAALTWAAAAASLSVEVEG-AMPS 427
                 56789999********************8722567777888899**************66655444455553333444444455556553368*********98865111111111111113344456999*******************984688999**************9999.4443 PP

>> TIGR03168  1-PFK: hexose kinase, 1-phosphofructokinase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.7   2.5   1.1e-13   1.2e-10     137     290 ..     247     426 ..     139     439 .. 0.77

  Alignments for each domain:
  == domain 1    score: 38.7 bits;  conditional E-value: 1.1e-13
   TIGR03168 137 lPrgvpedfyaelielakekgakvilDtsge..aLrealkakplliKPNkeEleelvgrelkteee.........vieaarellekGve..nvlvSlGadGallvtke.............galkaeapkvevvstvGAGDsmvAgfllale.kglsleealrlavAagsaaassegtelp 290
                 l r vpe++ +e++++a++ g++vi+D+ g   ++   l  ++++i PN+ El+ + g + +   +         v ++  ++ ++G +   vlv+lG+ Ga+ + +              g++   +p+++ ++t+GAGD + + f++al  +g+s++ al+ a Aa+s ++  eg ++p
  MMETSP1137-20121227|8075_1 247 LQREVPEHVNREVANAARKCGKPVIMDVGGTdaPVDVELLPHITMIAPNETELTFISGVATSVAGRpslslvrqaVSSLKARFSAAGNSdvEVLVTLGGMGAVHFASAwacgsdtahetrvGTFPLGTPDGKPKDTTGAGDCFRGSFIAALYgRGNSVAAALTWAAAAASLSVEVEG-AMP 426
                 5578999*********************8861155555666*****************88877777778884444444444445556442269*********98754311111111111113556678999******************9873788****************99998.444 PP

>> TIGR02198  rfaE_dom_I: bifunctional protein RfaE, domain I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0      0.41   4.2e+02       8      22 ..      64      78 ..      60      83 .. 0.85
   2 !   20.3   0.7   5.3e-08   5.4e-05     160     304 ..     254     426 ..     237     435 .. 0.72

  Alignments for each domain:
  == domain 1    score: -2.4 bits;  conditional E-value: 0.41
   TIGR02198  8 akvlvvGDlmlDeyl 22
                  vlvvG + +D y 
  MMETSP1137-20121227|8075_1 64 PSVLVVGSINVDLYQ 78
                579*********995 PP

  == domain 2    score: 20.3 bits;  conditional E-value: 5.3e-08
   TIGR02198 160 kvveeviaaarekgkpvlvDpkgk....dfskYkgatlltPNrkEleeavg...aveee...eelvkaaeklleelele.....allvTrsekGmtllek.......ekevlh...lp..aaakevyDVtGAGDtViav.lalalaagasleeaaelaNaaagvvvgklGtat 304
                 +v +ev +aar+ gkpv++D  g+    d++   + t++ PN++El+ + g   +v      + + +a ++l+ ++++       +lvT +  G   + +        ++ +    +p  +   +  D tGAGD   ++ +a+    g s++ a+++a aaa++ v+  G+  
  MMETSP1137-20121227|8075_1 254 HVNREVANAARKCGKPVIMDVGGTdapvDVELLPHITMIAPNETELTFISGvatSVAGRpslSLVRQAVSSLKARFSAAgnsdvEVLVTLGGMGAVHFASawacgsdTAHETRvgtFPlgTPDGKPKDTTGAGDCFRGSfIAALYGRGNSVAAALTWAAAAASLSVEVEGAMP 426
                 57899***************987634447899***************999965422222111335567788888877643333469********887764222211112222211122114445778********986516778899*******************9988865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (450 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       102  (0.0248659); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.38u 0.12s 00:00:00.50 Elapsed: 00:00:00.85
# Mc/sec: 698.77
//
Query:       MMETSP1137-20121227|8076_1  [L=329]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (329 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       186  (0.0453437); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.15s 00:00:00.43 Elapsed: 00:00:00.44
# Mc/sec: 986.92
//
Query:       MMETSP1137-20121227|8077_1  [L=345]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0028   14.5   0.0      0.039   10.8   0.0    2.1  2  TIGR03056 bchO_mg_che_rel: putative magnesium chelatase accessory protein


Domain annotation for each model (and alignments):
>> TIGR03056  bchO_mg_che_rel: putative magnesium chelatase accessory protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    1.5   0.0    0.0062        26      24      70 ..      62     109 ..      42     162 .. 0.68
   2 !   10.8   0.0   9.6e-06     0.039     212     272 ..     262     320 ..     249     325 .. 0.90

  Alignments for each domain:
  == domain 1    score: 1.5 bits;  conditional E-value: 0.0062
   TIGR03056  24 GpaaGPvllllh..GagasshsfrklvpllaarfrvvapdlPGhGftra 70 
                 G  +   lll+h  G+g ss  +  ++ +      v apdl G G +  
  MMETSP1137-20121227|8077_1  62 GHEDEAPLLLIHpiGIGMSSWFWEPFMESWE-GAEVFAPDLIGCGNSEP 109
                 4444456788896677888888899998765.45899999999998754 PP

  == domain 2    score: 10.8 bits;  conditional E-value: 9.6e-06
   TIGR03056 212 lqralpriavPvlliageedkavppdvskeaatrlplatlrevpGlGhlvheedadgvagl 272
                 ++ +l+ +  P+l++ g++dk v  +  k+  + +  +tl+++pGl  l  e +ad  +++
  MMETSP1137-20121227|8077_1 262 FEEELRELVQPTLVLSGDGDKRVEGR--KQFKSEMISCTLKTLPGLNVLPWESAADTCSAV 320
                 57899******************987..567789999*******************99875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (345 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        42  (0.0102389); expected 82.0 (0.02)
Passed bias filter:                       41  (0.00999512); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.26u 0.13s 00:00:00.39 Elapsed: 00:00:00.38
# Mc/sec: 1198.32
//
Query:       MMETSP1137-20121227|8078_1  [L=62]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (62 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        66  (0.0160897); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.13s 00:00:00.25 Elapsed: 00:00:00.53
# Mc/sec: 154.40
//
Query:       MMETSP1137-20121227|8079_1  [L=420]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.8e-05   19.7   5.3    0.00014   19.1   3.7    1.2  1  TIGR00599 rad18: DNA repair protein rad18


Domain annotation for each model (and alignments):
>> TIGR00599  rad18: DNA repair protein rad18
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   3.7   3.4e-08   0.00014       7      69 ..     147     211 ..     142     224 .. 0.84

  Alignments for each domain:
  == domain 1    score: 19.1 bits;  conditional E-value: 3.4e-08
   TIGR00599   7 tdssDwldtklpsLapldtslRChvCkdffkaPvltsCsHtFCslCiRrcLs...eepkCPlCrae 69 
                 t ++Dw++ + +    l++   C +C  ++  P+   C+H FC lC+ + ++    ++ C lCr++
  MMETSP1137-20121227|8079_1 147 TVATDWNSGHHAK-GSLNNVPECAICVSWLCEPISLRCGHLFCRLCLLQLVQfgpGHSSCALCRTP 211
                 6688998887654.57888889*************************998873335899****986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (420 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.29u 0.14s 00:00:00.43 Elapsed: 00:00:00.80
# Mc/sec: 692.94
//
Query:       MMETSP1137-20121227|8080_1  [L=162]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (162 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        79  (0.0192589); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.11s 00:00:00.28 Elapsed: 00:00:00.71
# Mc/sec: 301.16
//
Query:       MMETSP1137-20121227|8081_1  [L=548]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (548 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        93  (0.0226719); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.15s 00:00:00.51 Elapsed: 00:00:00.33
# Mc/sec: 2191.82
//
Query:       MMETSP1137-20121227|8082_1  [L=307]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.094    9.3   5.3       0.13    8.9   3.6    1.1  1  TIGR01648 hnRNP-R-Q: hnRNP-R, Q splicing factor family


Domain annotation for each model (and alignments):
>> TIGR01648  hnRNP-R-Q: hnRNP-R, Q splicing factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   3.6   3.1e-05      0.13     418     564 ..      80     226 ..      74     234 .. 0.58

  Alignments for each domain:
  == domain 1    score: 8.9 bits;  conditional E-value: 3.1e-05
   TIGR01648 418 glelspvnpvalkpqGikaapaileeisr.naapaP..kiiedgriltlekiiipaavsqdpai..aalappkasaavreakstpaey.qlrtlgvrtsagn.qriatagakakaydgyaaPdatarvataqqnkaaaavggdyagyitqevya 564
                 +   +p++ v++ p+Gi+++       s  ++a     +i  +   lt+ ++   ++   d+a   +++a p a+a+++ + +++    ++r+   +  +++ q +a+ +a      g aaP  +arvat  q   ++  + d agy++ +v +
  MMETSP1137-20121227|8082_1  80 SASATPIEQVNVLPSGIVSTQLKEFASSLaDGAVFAesNIFPKSE-LTISQMREQVMSRIDAANavSPYALPTAAATLSVGLAAAVAAsNQRSSVQEDAEPEwQLLASEAA-----RGAAAPGPKARVATVMQAGMSTDTYTDRAGYTG-SVQP 226
                 556789999999998888765443333333332221334444443.66666655555444443322556666666655555444433304444444445555333333333.....45679999***********************99.4444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (307 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       118  (0.0287665); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.27u 0.15s 00:00:00.42 Elapsed: 00:00:00.25
# Mc/sec: 1620.83
//
Query:       MMETSP1137-20121227|8083_1  [L=690]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (690 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       146  (0.0355924); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.54u 0.14s 00:00:00.68 Elapsed: 00:00:00.62
# Mc/sec: 1468.91
//
Query:       MMETSP1137-20121227|8085_1  [L=177]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (177 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        84  (0.0204778); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.18s 00:00:00.36 Elapsed: 00:00:00.44
# Mc/sec: 530.96
//
Query:       MMETSP1137-20121227|8086_1  [L=62]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (62 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        28  (0.00682594); expected 82.0 (0.02)
Passed bias filter:                       26  (0.00633837); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.13s 00:00:00.25 Elapsed: 00:00:00.42
# Mc/sec: 194.84
//
Query:       MMETSP1137-20121227|8087_1  [L=285]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (285 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        86  (0.0209654); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.17s 00:00:00.42 Elapsed: 00:00:00.38
# Mc/sec: 989.92
//
Query:       MMETSP1137-20121227|8088_1  [L=384]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (384 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        41  (0.00999512); expected 82.0 (0.02)
Passed bias filter:                       38  (0.00926377); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.15s 00:00:00.42 Elapsed: 00:00:00.42
# Mc/sec: 1206.76
//
Query:       MMETSP1137-20121227|8089_1  [L=762]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (762 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        86  (0.0209654); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.15s 00:00:00.59 Elapsed: 00:00:00.57
# Mc/sec: 1734.06
//
Query:       MMETSP1137-20121227|8090_1  [L=47]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (47 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       178  (0.0433935); expected 82.0 (0.02)
Passed bias filter:                      177  (0.0431497); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.57
# Mc/sec: 106.96
//
Query:       MMETSP1137-20121227|8091_1  [L=527]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.8e-38  130.1   6.6    1.8e-38  130.1   4.6    3.9  3  TIGR02475 CobW: cobalamin biosynthesis protein CobW
    6.3e-06   23.6   0.8    0.00029   18.2   0.0    2.2  2  TIGR00073 hypB: hydrogenase accessory protein HypB
     0.0019   15.5   0.0     0.0031   14.8   0.0    1.3  1  TIGR03015 pepcterm_ATPase: putative secretion ATPase, PEP-CTERM locus subfamily
     0.0051   14.3   0.1      0.071   10.6   0.3    2.1  2  TIGR03598 GTPase_YsxC: ribosome biogenesis GTP-binding protein YsxC
  ------ inclusion threshold ------
       0.04   11.5   2.7       0.48    8.0   1.8    2.2  1  TIGR00231 small_GTP: small GTP-binding protein domain


Domain annotation for each model (and alignments):
>> TIGR02475  CobW: cobalamin biosynthesis protein CobW
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  130.1   4.6   2.2e-41   1.8e-38       2     249 ..     111     339 ..     110     349 .. 0.89
   2 ?   -5.9   3.7         5   4.1e+03     237     252 ..     348     363 ..     337     373 .. 0.66
   3 !   10.5   4.3   5.2e-05     0.043     237     341 ..     398     506 ..     368     507 .. 0.73

  Alignments for each domain:
  == domain 1    score: 130.1 bits;  conditional E-value: 2.2e-41
   TIGR02475   2 akipvtvvtGflGaGkttlirhllenaeGkriavivnefGdlGidGeilkacgieacseeeivelanGcicctvaddflptlekllareeeldhilietsGlalpkplvqafqw.peirsrvtvdgvvavvdsaavaaGrfaedldaleaqraadenldhespleelfedqlacadlvilnkadlldaaglekvraeiaeelpravkiveaeeGevdaevllGlgaaaeedlearkshhdleeeeeehd 249
                 +k+p+tvvtGflGaGkttl++ +l++   k+i vi nefG + id  ++k+   +    ee++ + nGc cctv  d++ ++ +l +r+++ d +l+et+Gla p p++++     ++ ++  +dgv+++vd++ +          +l+++ra+d        ++e    q+a +d +ilnk+dl++ ++l+ v+++i++ +++  +++e+++ +v+++ l+Gl+  + e +e+    +dlee+ee  d
  MMETSP1137-20121227|8091_1 111 EKLPITVVTGFLGAGKTTLVNYILNEQXDKKICVIENEFGAVSIDEALVKENVKA---AEELITMDNGCACCTVRGDLVKAFGQLKDRRKNFDLVLLETTGLADPAPVIKTITSdFSLMNNFRIDGVLCLVDCKHIL--------THLNDKRAEDT-------VNEAV-QQVAFSDRIILNKTDLVTKEELAIVKETINS-INSFAELMESQQSRVPMDKLMGLNSFSLERFEEEIKEYDLEEAEECTD 339
                 79***********************************************998444...678999**********************************************9875158999************99774........45667776654.......45544.699***********************99976.777889*******************99999999999999999766544 PP

  == domain 2    score: -5.9 bits;  conditional E-value: 5
   TIGR02475 237 shhdleeeeeehdhde 252
                 + h++e++++eh h e
  MMETSP1137-20121227|8091_1 348 TTHGHEHGHHEHGHAE 363
                 4566666666666655 PP

  == domain 3    score: 10.5 bits;  conditional E-value: 5.2e-05
   TIGR02475 237 shhdlee.eeeehdhdefdsvvvdlgevadvdalaerlekl..veeedvlrikGfvevegk.plrllvqavGkrvdsyydr.awkaeearstrlvviGlkdldeaaiaaa 341
                  h d +  ++++hd   + s++++       +++++ + kl  ++ +d++r kG +  e+    +++ q+v + ++    r +w+  e + +++v iG+  l++++++a+
  MMETSP1137-20121227|8091_1 398 GHADKKPkKKKKHDLSGVGSMALKSEVPLRSADFNRFMTKLlqAKAQDLYRSKGVLCFEQEgNKKFVFQGVHEDIQFTEARtEWAEGEPKVSKIVFIGRD-LNRDELEAS 506
                 23332223567788888999888655545555666666665114679*******99988761568999*******97766637***************97.**9999875 PP

>> TIGR00073  hypB: hydrogenase accessory protein HypB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.0   3.5e-07   0.00029      35     120 ..     118     208 ..     101     215 .. 0.69
   2 !    3.8   0.1    0.0092       7.5     144     193 ..     252     299 ..     240     315 .. 0.78

  Alignments for each domain:
  == domain 1    score: 18.2 bits;  conditional E-value: 3.5e-07
   TIGR00073  35 llssiGsGktlllekliealkkevkiavieGDlitkaDaeRlrkagvka.iq...intGke.ChLdaklva..dalkdlelddkdlllienvG 120
                 + +  G+Gkt+l++ +++++ +  ki+vie +  +    e l k +vka ++   +  G + C +  +lv+   +lkd   ++ dl+l+e  G
  MMETSP1137-20121227|8091_1 118 VTGFLGAGKTTLVNYILNEQXD-KKICVIENEFGAVSIDEALVKENVKAaEElitMDNGCAcCTVRGDLVKafGQLKDRR-KNFDLVLLETTG 208
                 55678********988876655.9********988766666666666552332114445442678999999444444444.667****99877 PP

  == domain 2    score: 3.8 bits;  conditional E-value: 0.0092
   TIGR00073 144 GdDkvlkyPeifkeadlilinkvdlveavdadvekvkadvkkinPeveii 193
                  +D+v    + ++ +d i++nk+dlv + ++ +  vk+ + +in  +e++
  MMETSP1137-20121227|8091_1 252 AEDTVNEAVQQVAFSDRIILNKTDLVTKEELAI--VKETINSINSFAELM 299
                 578888888889999**********99876655..667777777766665 PP

>> TIGR03015  pepcterm_ATPase: putative secretion ATPase, PEP-CTERM locus subfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   3.8e-06    0.0031      46      74 ..     116     144 ..     109     210 .. 0.85

  Alignments for each domain:
  == domain 1    score: 14.8 bits;  conditional E-value: 3.8e-06
   TIGR03015  46 ilitGevGaGkttlvrnllkkleaekvvl 74 
                  ++tG +GaGkttlv ++l+++ ++k+ +
  MMETSP1137-20121227|8091_1 116 TVVTGFLGAGKTTLVNYILNEQXDKKICV 144
                 69*****************9999888755 PP

>> TIGR03598  GTPase_YsxC: ribosome biogenesis GTP-binding protein YsxC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.0     0.096        79      14      42 ..     108     137 ..     101     143 .. 0.72
   2 !   10.6   0.3   8.7e-05     0.071      97     156 ..     227     291 ..     217     315 .. 0.71

  Alignments for each domain:
  == domain 1    score: 0.7 bits;  conditional E-value: 0.096
   TIGR03598  14 pedklpei.afaGrSNvGKSsliNaLtnrk 42 
                 pe+++  i +++G   +GK +l+N ++n++
  MMETSP1137-20121227|8091_1 108 PEEEKLPItVVTGFLGAGKTTLVNYILNEQ 137
                 55544444145688889********99986 PP

  == domain 2    score: 10.6 bits;  conditional E-value: 8.7e-05
   TIGR03598  97 krenLkgvvllvDirhelkelD.....lellellkeakipvlvvltKaDklkkselkkalkkvkk 156
                 +  ++ gv+ lvD++h l++l+      ++ e +++ +++  ++l+K+D ++k+el+  ++++++
  MMETSP1137-20121227|8091_1 227 NNFRIDGVLCLVDCKHILTHLNdkraeDTVNEAVQQVAFSDRIILNKTDLVTKEELAIVKETINS 291
                 5567889*********99876411111446667777888889***********998766665554 PP

>> TIGR00231  small_GTP: small GTP-binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   1.8   0.00059      0.48       7      43 ..     117     151 ..     111     314 .. 0.68

  Alignments for each domain:
  == domain 1    score: 8.0 bits;  conditional E-value: 0.00059
   TIGR00231   7 vivGhvdvGKstLlnsllknkisiteskpgvtrdyvt 43 
                 v+ G+ ++GK+tL n++l ++   +++   ++ ++ +
  MMETSP1137-20121227|8091_1 117 VVTGFLGAGKTTLVNYILNEQ-XDKKI-CVIENEFGA 151
                 67899*************988.44444.455555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (527 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       292  (0.0711848); expected 82.0 (0.02)
Passed bias filter:                      182  (0.0443686); expected 82.0 (0.02)
Passed Vit filter:                        45  (0.0109703); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.52u 0.18s 00:00:00.70 Elapsed: 00:00:00.70
# Mc/sec: 993.69
//
Query:       MMETSP1137-20121227|8092_1  [L=580]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.1e-15   53.3   0.0    1.1e-14   52.2   0.0    1.4  2  TIGR02779 NHEJ_ligase_lig: DNA polymerase LigD, ligase domain
    1.2e-10   38.7   0.0    1.9e-10   38.1   0.0    1.2  1  TIGR02776 NHEJ_ligase_prk: DNA ligase D
    7.9e-05   19.3   0.0    0.00013   18.6   0.0    1.3  1  TIGR00574 dnl1: DNA ligase I, ATP-dependent (dnl1)


Domain annotation for each model (and alignments):
>> TIGR02779  NHEJ_ligase_lig: DNA polymerase LigD, ligase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.2   0.0   8.1e-18   1.1e-14      14     235 ..     338     542 ..     327     544 .. 0.83
   2 ?   -3.0   0.0      0.51     7e+02     270     297 ..     551     578 ..     549     579 .. 0.82

  Alignments for each domain:
  == domain 1    score: 52.2 bits;  conditional E-value: 8.1e-18
   TIGR02779  14 ddWlyevKyDGyRlllrieegkvrlisRngrdltekfeelaaaakalklreavlDGEiVvldeegrsdFsalqnrlrakkaepltylaFDlleldgedlrdlplseRkklLeellkeakaklaairlseelesdgqalleaavklglEGvvaKrkdsrYrsgrskdWlKlKnrkrqevvivgYtesngsr.sklgaLllavyedgklryvGkvgtGfseaelk 235
                 + Wl   K DG+R++ + +++   l+sR+g+++ +     +++++ l+ +++ lDGE+   + +++   s + ++ + +  +++ +++FD ++  g      + +eR ++ ++ l+ +   +++     +  +++++ l+ ++++g+EG+  ++  ++ r grs+d lK+K  + +e+++ g+++++g++  +lgaLl  +++        kvgtGfs+a+++
  MMETSP1137-20121227|8092_1 338 TGWLGSEKLDGMRCVWDGKGN---LWSRTGHQVHA----PDWFTRGLP-LRLDLDGELFLGRGRFQECVSIVRRQDKPDDWSRIRFVVFDAPNAGG------AITERLSAARDALQGHTYAQVHHHWRCNGIEHVRDQLKIVEDQGGEGLMLRHPTAPHRGGRSADLLKVKSARDDEALVIGHEAGKGKHaGRLGALLCRLRS----GVTFKVGTGFSNAQRE 542
                 5799999*******9887777...******99865....689999998.7899******9999888888888888888888**************9......4455555555555544444444555566667788889************************************************9987889999988888....34458******99875 PP

  == domain 2    score: -3.0 bits;  conditional E-value: 0.51
   TIGR02779 270 aevefaeltedgeLReasFkglredkpa 297
                 ++ ++ elt+ +  R ++F+++r d ++
  MMETSP1137-20121227|8092_1 551 ITFRYFELTQAHVPRFPAFHRIRPDVQW 578
                 566788999888889********99876 PP

>> TIGR02776  NHEJ_ligase_prk: DNA ligase D
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.1   0.0   1.4e-13   1.9e-10       5     226 ..     338     542 ..     335     579 .. 0.82

  Alignments for each domain:
  == domain 1    score: 38.1 bits;  conditional E-value: 1.4e-13
   TIGR02776   5 eeWlyEvKyDGYRvllriedgkvrLitrngldltekfpelvkalkllklldailDGEiVvldekgvadFaalQnaleegakekllylaFDlleleGedlralpleeRkkrLkellkaakldeesaikaseqveeeteallesacklklEGvvaKradsaYrsgrskdWlKlKcrkrqevvitgytesng..arklgallvgvyeegelkyvgkvgtGfeaeelk 226
                 ++Wl   K DG R++   +++   L +r+g+++++      +++     l++ lDGE+     +++   + + +  +    +++ +++FD +++ G       ++eR ++ ++ l++++  + +    ++ +e+  ++ l+ ++  ++EG++ ++ ++++r grs+d lK+K  + +e ++ g+++ +g  a++lgall+ + ++       kvgtGf++++++
  MMETSP1137-20121227|8092_1 338 TGWLGSEKLDGMRCVWDGKGN---LWSRTGHQVHA-----PDWFTRGLPLRLDLDGELFLGRGRFQECVSIVRRQDKPDDWSRIRFVVFDAPNAGGA------ITERLSAARDALQGHTYAQVHHHWRCNGIEH-VRDQLKIVEDQGGEGLMLRHPTAPHRGGRSADLLKVKSARDDEALVIGHEAGKGkhAGRLGALLCRLRSG----VTFKVGTGFSNAQRE 542
                 5799999*******8765555...*******9864.....566665555899********999999999999999999999************9985......5566666666666655442222333333544.4456799*******************************************98862256699999988887....56699****998876 PP

>> TIGR00574  dnl1: DNA ligase I, ATP-dependent (dnl1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.0   9.9e-08   0.00013     324     413 ..     445     526 ..     427     540 .. 0.84

  Alignments for each domain:
  == domain 1    score: 18.6 bits;  conditional E-value: 9.9e-08
   TIGR00574 324 eivekkqvssnaeeiekflneaisegcEGlvvKnlksiYepgkRgenwlKvkpeyleelgdnlDLvviGaylGkgkrtglygsfllavad 413
                 ++ ++ ++ ++ e +++ l+ + ++g EGl++ ++ ++   g R+ + lKvk    ++  d++  +viG   Gkgk +g +g +l+  + 
  MMETSP1137-20121227|8092_1 445 QVHHHWRC-NGIEHVRDQLKIVEDQGGEGLMLRHPTAPH-RGGRSADLLKVK----SARDDEA--LVIGHEAGKGKHAGRLGALLCRLRS 526
                 45667778.79*************************996.578*********....6666665..899******************7765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (580 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        92  (0.0224281); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.39u 0.13s 00:00:00.52 Elapsed: 00:00:00.42
# Mc/sec: 1822.71
//
Query:       MMETSP1137-20121227|8093_1  [L=485]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (485 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        83  (0.020234); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.13s 00:00:00.46 Elapsed: 00:00:00.45
# Mc/sec: 1422.55
//
Query:       MMETSP1137-20121227|8094_1  [L=341]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.074    9.6   6.2      0.073    9.6   4.3    1.2  1  TIGR01645 half-pint: poly-U binding splicing factor, half-pint family


Domain annotation for each model (and alignments):
>> TIGR01645  half-pint: poly-U binding splicing factor, half-pint family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   4.3   1.8e-05     0.073     291     367 ..      18     102 ..       4     291 .. 0.76

  Alignments for each domain:
  == domain 1    score: 9.6 bits;  conditional E-value: 1.8e-05
   TIGR01645 291 salPaaaavaaaaatakitaaeavagaavlglraqspatasssl..vtdieakavvssakkeae......evpalpqaapavlkd 367
                 +  P+aa+ aaa  +a + aa a+ag a+l+++  s a+a        + ++++++++a ++          +++p+aa  v + 
  MMETSP1137-20121227|8094_1  18 GEEPSAASWAAAGRAAAVRAAAAAAGLAALAPSFGSEALAQPGAqaLLSGGSTPLLAAAAEKCSaltpsgATGSVPEAAATVEAH 102
                 55699*********************99999998888776443300334456666665544433233333444555555555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (341 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       139  (0.0338859); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.28u 0.14s 00:00:00.42 Elapsed: 00:00:00.60
# Mc/sec: 750.14
//
Query:       MMETSP1137-20121227|8095_1  [L=496]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (496 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        46  (0.011214); expected 82.0 (0.02)
Passed bias filter:                       40  (0.00975134); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.14s 00:00:00.47 Elapsed: 00:00:00.61
# Mc/sec: 1073.22
//
Query:       MMETSP1137-20121227|8096_1  [L=132]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (132 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        85  (0.0207216); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.15s 00:00:00.31 Elapsed: 00:00:00.28
# Mc/sec: 622.23
//
Query:       MMETSP1137-20121227|8097_1  [L=175]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (175 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        58  (0.0141394); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.15s 00:00:00.34 Elapsed: 00:00:00.28
# Mc/sec: 824.93
//
Query:       MMETSP1137-20121227|8098_1  [L=50]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (50 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        73  (0.0177962); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.13s 00:00:00.25 Elapsed: 00:00:00.26
# Mc/sec: 253.83
//
Query:       MMETSP1137-20121227|8099_1  [L=467]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   1.4e-175  581.8   0.2   1.6e-175  581.6   0.1    1.0  1  TIGR00713 hemL: glutamate-1-semialdehyde-2,1-aminomutase
    2.4e-53  179.1   0.1    3.7e-53  178.5   0.1    1.2  1  TIGR00707 argD: acetylornithine and succinylornithine transaminases
    2.7e-43  146.0   0.6    2.3e-42  142.9   0.4    2.1  1  TIGR00700 GABAtrnsam: 4-aminobutyrate transaminase
      1e-41  141.1   0.2    1.4e-41  140.6   0.1    1.1  1  TIGR03246 arg_catab_astC: succinylornithine transaminase family
    4.6e-39  132.1   0.0    6.4e-39  131.6   0.0    1.1  1  TIGR01885 Orn_aminotrans: ornithine--oxo-acid transaminase
      2e-36  123.7   0.5    2.6e-36  123.3   0.4    1.1  1  TIGR03372 putres_am_tran: putrescine aminotransferase
    8.7e-36  121.2   0.0    2.1e-35  119.9   0.0    1.6  1  TIGR00508 bioA: adenosylmethionine-8-amino-7-oxononanoate transaminase
    7.4e-35  118.2   0.4    2.7e-33  113.0   0.3    2.0  1  TIGR00709 dat: 2,4-diaminobutyrate 4-transaminase
      4e-25   86.1   0.0    1.9e-24   83.9   0.0    1.8  1  TIGR02407 ectoine_ectB: diaminobutyrate--2-oxoglutarate aminotransferase
    2.8e-15   53.6   0.0    1.4e-14   51.3   0.0    1.9  2  TIGR03251 LAT_fam: L-lysine 6-transaminase
    1.6e-06   25.0   0.0    6.9e-06   22.9   0.0    1.8  2  TIGR00699 GABAtrns_euk: 4-aminobutyrate aminotransferase
    5.4e-05   20.1   0.1    9.5e-05   19.3   0.0    1.6  1  TIGR01822 2am3keto_CoA: 2-amino-3-ketobutyrate coenzyme A ligase
  ------ inclusion threshold ------
      0.011   12.4   0.0      0.019   11.5   0.0    1.4  1  TIGR00858 bioF: 8-amino-7-oxononanoate synthase


Domain annotation for each model (and alignments):
>> TIGR00713  hemL: glutamate-1-semialdehyde-2,1-aminomutase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  581.6   0.1  5.2e-178  1.6e-175       3     422 ..      47     466 ..      45     467 .] 0.99

  Alignments for each domain:
  == domain 1    score: 581.6 bits;  conditional E-value: 5.2e-178
   TIGR00713   3 eklfeeakqvlpGGvnsPvRafkavkgtPlfvekakgallldvdgneyiDyvlsyGplilGhahekvveavkealerGlsyGapteaeielakeiiervksvekvRlvnsGteatmsavRlaRgftgrdkiikfeGcyhGhaDalLvkagsgaatlglpsslgvpeeaakltlvlpyndlealeevleelgeeiagvivepvagnmgvvlpkkeflealrelteengallilDevvtGFRvalegaqelygvepDlvvlGkilggGlPvgalggrreimerlaPeGkvyqaGtlsgnplavaaGlatlkaleeeevykeleelaeklaegleevleekgievevvrvgsmlslffteeevtnfaeakksdtelfakffkellekGvylapsqfealFvsaaheeealektiealeevlke 422
                 +++ +ea+ ++pGGv+sPvRafk+v+g+P++  + kg++ +dvdgney+Dyv+++Gp i+Gha+++v++a+k +le+G+s+Gap   e elak++i+ v+sve+vR++nsGtea m  +Rl R++t+r+k+ikf+GcyhGhaD++Lv+agsg+atlglp+s+gv++ a++ tlv++ynd+e++++++e+++ e+agvi+e v+gn g + p kefl++lr+l++engall++Dev+tGFR++++gaq+ +g++pDl ++Gk++ggGlPvga++g++eime +aP+G++yqaGtlsgnpla++aG++tl+ l++ ++y++l++++ +l +g+ ++++e+g +v   +++ m+++fft+ +v++fa+a ksdte+fak+++ +le+Gvylapsq+ea F+s ah+ee+++ ti+a++ev+++
  MMETSP1137-20121227|8099_1  47 NQIMAEARTIMPGGVSSPVRAFKSVGGEPVVFDRVKGSKAYDVDGNEYVDYVGTWGPAIVGHADDRVLDALKVTLEKGTSFGAPCALENELAKMVIDAVPSVEMVRFTNSGTEACMGVLRLMRAYTKREKVIKFDGCYHGHADSFLVAAGSGVATLGLPDSPGVTSGASASTLVAKYNDIESVKALFEANKGEVAGVILEGVVGNSGFIVPDKEFLQGLRQLCDENGALLVFDEVMTGFRISYGGAQQHWGITPDLSCFGKVIGGGLPVGAYAGKKEIMEMVAPAGPMYQAGTLSGNPLAMTAGIKTLEILKQPGTYEQLDKITGRLINGILDAAREAGHDVCGGHISGMFGFFFTKGPVKCFADAAKSDTEKFAKWHRGMLERGVYLAPSQYEAGFTSLAHTEEDVDFTIAAAKEVFAT 466
                 67789****************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************986 PP

>> TIGR00707  argD: acetylornithine and succinylornithine transaminases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  178.5   0.1   1.2e-55   3.7e-53       6     313 ..      71     384 ..      67     415 .. 0.86

  Alignments for each domain:
  == domain 1    score: 178.5 bits;  conditional E-value: 1.2e-55
   TIGR00707   6 yarlelaivrgkgakvyDveGkeYlDlvaGiavnalGHahpklvealkeqleklvhvsnlyateeqlelaeklvels.aadrvffcnsGaeanEaAlklarkaarkkgkekkkivafknsFHGRtlgalsatgkpkykkdFeplvpgvk.......yveyndiealkeaidde...taavivEpiqGEgGvvpadkeflkalrelceekdvllivDEvqtGlGRtGklfayehygvePDiltlakalggGvPigavlakeevaealtvG...dHgstfGGnplacaaalavleviekeellekvkekgeilkkkleellkkk 313
                  +  ++++ r kg+k yDv+G eY+D+v+  + +++GHa +++ +alk  lek +  +       + ela+ +++++  ++ v f+nsG+ea  + l+l r +++     ++k++ f   +HG   + l a+g      +  + ++  +        ++yndie++k++ + +   +a+vi+E + G++G +++dkefl++lr+lc+e+++ll++DEv tG+ R     a++h+g++PD+   +k +ggG+P+ga   k+e+ e++ +      + t  Gnpla++a+ ++le+++++ + e+  +    l++ + +  ++ 
  MMETSP1137-20121227|8099_1  71 VGGEPVVFDRVKGSKAYDVDGNEYVDYVGTWGPAIVGHADDRVLDALKVTLEKGTSFGAP--CALENELAKMVIDAVpSVEMVRFTNSGTEACMGVLRLMRAYTK-----REKVIKFDGCYHGHADSFLVAAGSGVATLGLPDSPGVTSgasastlVAKYNDIESVKALFEANkgeVAGVILEGVVGNSGFIVPDKEFLQGLRQLCDENGALLVFDEVMTGF-RISYGGAQQHWGITPDLSCFGKVIGGGLPVGAYAGKKEIMEMVAPAgpmYQAGTLSGNPLAMTAGIKTLEILKQPGTYEQLDKITGRLINGILDAAREA 384
                 5667999*********************************************98766665..5667899***9998735679***********************.....9**************9999988887777666554322211112222689********998876677**********************************************.*****************************************998742335799************************9999998888777766555554 PP

>> TIGR00700  GABAtrnsam: 4-aminobutyrate transaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  142.9   0.4   7.2e-45   2.3e-42      16     337 ..      75     381 ..      66     395 .. 0.83

  Alignments for each domain:
  == domain 1    score: 142.9 bits;  conditional E-value: 7.2e-45
   TIGR00700  16 rvlaakaegaelkdvdGnrlidlaagiavlnvGhshPkvveavkrqveelthtafqvvpyesyvelaeklnaiaPgsgekkavllnsGaeavenavkiarkytgrpgvvafsrgfhGrtnltmaltakvkPykiGfGPfapevyraPlpydyrdialdkqeslddelaaiealfvadveaeqvaavvlePvqGeGGfivpakelvaavaslckehgivliadevqtGfartGklfaieheddkPdlitvaksladGlPlsgvvGraeildapapGg...lGGtyaGnPlavaaalavldiieeeglieraeqigklvkdklielk 337
                 +v+  + +g++ +dvdGn+++d+ ++ +   vGh + +v++a+k  +e+ t  +    p     ela+ +    P+ +     + nsG+ea    +++ r+yt+r+ v+ f++++hG +   +   a +    +G+ P +p v     ++++          ++  +++++alf a+    +va v+le v G+ Gfivp ke+++ +++lc+e+g +l+ dev tGf r     a +h++ +Pdl +  k + +GlP+ +  G+ ei++  ap g     Gt +GnPla++a   +l+i+++ g  e+ ++i  ++ + ++++ 
  MMETSP1137-20121227|8099_1  75 PVVFDRVKGSKAYDVDGNEYVDYVGTWGPAIVGHADDRVLDALKVTLEKGTSFGA---PCALENELAKMVIDAVPSVEMV--RFTNSGTEACMGVLRLMRAYTKREKVIKFDGCYHGHADSFLVA-AGSGVATLGL-PDSPGVTSGASASTLV-------AKYN-DIESVKALFEAN--KGEVAGVILEGVVGNSGFIVPDKEFLQGLRQLCDENGALLVFDEVMTGF-RISYGGAQQHWGITPDLSCFGKVIGGGLPVGAYAGKKEIMEMVAPAGpmyQAGTLSGNPLAMTAGIKTLEILKQPGTYEQLDKITGRLINGILDAA 381
                 5666788999*************************************99765554...4444558899888888877665..599********************************99755433.3333345565.5566665544433332.......2233.589999999876..668**********************************************.777888***********************************98886643358*****************************999877766666654 PP

>> TIGR03246  arg_catab_astC: succinylornithine transaminase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  140.6   0.1   4.4e-44   1.4e-41      18     310 ..      75     372 ..      69     384 .. 0.84

  Alignments for each domain:
  == domain 1    score: 140.6 bits;  conditional E-value: 4.4e-44
   TIGR03246  18 kfipvrgeGsrvwdqegkeyidfaGGiavnalGhahpelvealkeqaeklwhlgngytnepvlrlakklvdat.fadkvffcnsGaeaneaalklarkvaldkygaekseivafknsfhGrt.lftvsvG.Gqakysedfap.....lpegikhaayndlealkalisdk...tcavivepiqGegGvvpadkaflkglrelcdrhnallifdevqtGvGrtGelyaymeyGvtpdiltsakalGgGfpiGalltteelakvlkvG...thGttyGGnplacavaekvldlvntaelleGvkqrhel 310
                 +++ +r +Gs+ +d +g+ey+d+ G    + +Gha   + +alk   ek    g   + e+  +lak ++da    + v f+nsG+ea    l+l r ++       +++++ f  ++hG +  f v++G G a      +p       +    a+ynd+e++kal + +      vi+e + G++G + +dk+fl+glr+lcd+ +all+fdev tG  r+ +  a ++ G+tpd+    k +GgG+p+Ga   ++e+ ++++         t  Gnpla +   k l++++++ + e + + + +
  MMETSP1137-20121227|8099_1  75 PVVFDRVKGSKAYDVDGNEYVDYVGTWGPAIVGHADDRVLDALKVTLEKGTSFGAPCALEN--ELAKMVIDAVpSVEMVRFTNSGTEACMGVLRLMRAYTK------REKVIKFDGCYHGHAdSFLVAAGsGVATLGLPDSPgvtsgASASTLVAKYNDIESVKALFEANkgeVAGVILEGVVGNSGFIVPDKEFLQGLRQLCDENGALLVFDEVMTGF-RISYGGAQQHWGITPDLSCFGKVIGGGLPVGAYAGKKEIMEMVAPAgpmYQAGTLSGNPLAMTAGIKTLEILKQPGTYEQLDKITGR 372
                 578899*******************************************988888888776..689*****9735799*******************9864......579**********864688888834444332222210001334445689*********998652225789*****************************************7.999999*********************************9998764232467899*******************9888777665555 PP

>> TIGR01885  Orn_aminotrans: ornithine--oxo-acid transaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  131.6   0.0     2e-41   6.4e-39      20     329 ..      75     383 ..      66     396 .. 0.81

  Alignments for each domain:
  == domain 1    score: 131.6 bits;  conditional E-value: 2e-41
   TIGR01885  20 pvvlskaeGakvwdvegkryldflsaysavnqGhchpkivkalveqaqkltlssrafyndvfgefaeyvtk.lfGydkvlpmntGaeavetaiklarkWgykkkkipedkalilsaegnfhGrtlavislstdpesrenfGpyvpnvkkieynnlealeealeeagekvaaflvePiqGeaGvvvpddgylkkvrelckkynvlliadeiqtGiartGkllaveheevkPdivllGkalsgGvyPvsavladkevmltikpg...ehGstygGnPlasavavaalevlkeeklaeraeklGeelreelkklkke 329
                 pvv+++ +G+k +dv+g++y+d++ ++     Gh+  ++++al+   +k t            e+a++v + +   ++v  +n+G+ea    ++l r ++ ++k i  d       +++f   + + +++   p+s       ++++   +yn++e+++  +e+++ +va++++e + G++G +vpd+++l+  r+lc+++  ll+ de+ tG  r     a +h ++ Pd+  +Gk ++gG +Pv a  ++ke+m ++ p        t +GnPla +  +++le+lk+    e+ +k+  +l + + +  +e
  MMETSP1137-20121227|8099_1  75 PVVFDRVKGSKAYDVDGNEYVDYVGTWGPAIVGHADDRVLDALKVTLEKGTSFGA--PCALENELAKMVIDaVPSVEMVRFTNSGTEACMGVLRLMRAYTKREKVIKFDGCYH-GHADSFLVAAGSGVATLGLPDSPGVTSGASASTLVAKYNDIESVKALFEANKGEVAGVILEGVVGNSGFIVPDKEFLQGLRQLCDENGALLVFDEVMTGF-RISYGGAQQHWGITPDLSCFGKVIGGG-LPVGAYAGKKEIMEMVAPAgpmYQAGTLSGNPLAMTAGIKTLEILKQPGTYEQLDKITGRLINGILDAARE 383
                 9******************************************999998775432..2333445566655515578*********************9888777666555443.3334443333333333333344333333444557889**************************************************************7.77777899***************9888.6***************9862225789****************************99998888877666555 PP

>> TIGR03372  putres_am_tran: putrescine aminotransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  123.3   0.4   8.3e-39   2.6e-36      70     375 ..      87     389 ..      47     403 .. 0.83

  Alignments for each domain:
  == domain 1    score: 123.3 bits;  conditional E-value: 8.3e-39
   TIGR03372  70 vdtqgqeyldclggygifnvghrnpvvvaavesqlakqplhsqelldplrallaktlaaltpgklkysffsnsgtesveaalklakayqsprgkytfiaasgafhgkslgalsataksafrkpfmpllpgfrhva.fgdieamlkalqeckk....tgddvaavilepiqgeggvilppenyltavrklcdevgallildevqtgmgrtgkmfacehenvqpdilclakalgggvmpigatvateevfsvlf.enpflhtttfggnplacaaalatvnvlleknlpeqaeikgellldglrqlaaeypdlvi 375
                  d +g+ey+d +g +g   vgh +  v+ a++  l k           l   lak +    p  +    f+nsgte+    l+l +ay   r k   i   g++hg++   l a+  s      +p  pg    a    + a  ++++ +k        +va vile + g+ g i+p +++l+ +r+lcde gall++dev tg+ r     a +h ++ pd+ c+ k +ggg +p+ga    +e++ ++    p+ ++ t+ gnpla +a + t+++l +    eq ++    l++g+ + a+e  + v 
  MMETSP1137-20121227|8099_1  87 YDVDGNEYVDYVGTWGPAIVGHADDRVLDALKVTLEKGTSFG--APCALENELAKMVIDAVPS-VEMVRFTNSGTEACMGVLRLMRAYTK-REK--VIKFDGCYHGHADSFLVAA-GSGVATLGLPDSPGVTSGAsASTLVAKYNDIESVKAlfeaNKGEVAGVILEGVVGNSGFIVPDKEFLQGLRQLCDENGALLVFDEVMTGF-RISYGGAQQHWGITPDLSCFGKVIGGG-LPVGAYAGKKEIMEMVApAGPMYQAGTLSGNPLAMTAGIKTLEILKQPGTYEQLDKITGRLINGILDAAREAGHDVC 389
                 5999*******************************9987555..55679999***99999886.778899******************75.555..57889******99888775.55566666777777765431233344444444443211113358*********************************************8.778889*******************99.6*******999998665278***************************9*****99999999****999999876665 PP

>> TIGR00508  bioA: adenosylmethionine-8-amino-7-oxononanoate transaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  119.9   0.0   6.8e-38   2.1e-35      12     360 ..      73     400 ..      63     464 .. 0.79

  Alignments for each domain:
  == domain 1    score: 119.9 bits;  conditional E-value: 6.8e-38
   TIGR00508  12 epplavekaegvyltdedgkeliDgisSwwvavhGhnhpelneaikeqleklehvifaglthepaieLaekLveilpeglekvffsdsGsvavEvalKmalqywqnkgekekkkflalengYHGdTlgamsvgdvelfhelfeellfeqvkvpapevalekkeeekeeevleeleklleehaeeiaalivEPlvqgagGmrvyspeyLkklrelcdeydvlliaDEiatGfgrtGklFacehagvtPDilclsKaltgGylplaatltteeiyeaflsdeeekaflHghtytgnplacavAlaslelleeeeilekvkeieaqlkeeleelke..lpkvkdvRvlGaigav 360
                  +p++ ++ +g++ +d dg+e++D +  w  a+ Gh+++++ +a+k  lek    +  g   +   eLa+ +++ +p ++e v f++sG  a    l++   y      ++++k++++++ YHG     +  +++++ +    +    +  ++a +          + + +e++++l+e+++ e+a++i+E +v g +G  v ++e+L+ lr+lcde++ ll++DE++tGf r     a +h g+tPD+ c++K + gG lp+ a   ++ei+e++      + ++ + t +gnpla ++++++le+l++  + e++ +i+ +l +++ ++++   + v      G+ g +
  MMETSP1137-20121227|8099_1  73 GEPVVFDRVKGSKAYDVDGNEYVDYVGTWGPAIVGHADDRVLDALKVTLEK---GTSFGAPCALENELAKMVIDAVP-SVEMVRFTNSGTEACMGVLRLMRAY------TKREKVIKFDGCYHGHADSFLVAAGSGVATLGLPDSPGVTSGASAST-------LVAKYNDIESVKALFEANKGEVAGVILEGVV-GNSGFIVPDKEFLQGLRQLCDENGALLVFDEVMTGF-RISYGGAQQHWGITPDLSCFGKVIGGG-LPVGAYAGKKEIMEMVAPA---GPMYQAGTLSGNPLAMTAGIKTLEILKQPGTYEQLDKITGRLINGILDAAReaGHDVCGGHISGMFGFF 400
                 577888999************************************987665...556688888999*********97.689***********98888888777......46899**********87665544444443333222222222222222.......223345699*******************965.999*********************************.777888****************99766.8*************99876...479999********************************9999888776444123444444555555555 PP

>> TIGR00709  dat: 2,4-diaminobutyrate 4-transaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  113.0   0.3   8.5e-36   2.7e-33      12     325 ..      63     361 ..      59     386 .. 0.79

  Alignments for each domain:
  == domain 1    score: 113.0 bits;  conditional E-value: 8.5e-36
   TIGR00709  12 sevrsy..vrklplafakakGckvtdveGkeyldflaGaGtlalGhndealkqklkdvldsglvlhtldlttklkdafieallaillkpkeeyilqftGpsGadaveaalklakkytGrsnvisfsgGfhGmtiGalaltGnlsaknavenllsgvqflpydheyreplglggeagadaviey..ienfledvesGvdkpaavileaiqGeGGvvaasveflrkirevtrkrdillildevqaGvarsGklfafehaGiepdvvvlskavGGglplavlaikke.fdafqpae...htGtfrGnqlalatGlealeilkden 325
                 s vr++  v + p++f + kG k +dv+G+ey+d++   G   +Gh d+ ++ +lk +l++g           l +++++ +   ++   +  +++ft  sG++a    l+l + yt r +vi f g +hG +   l  +G              v +l  ++         g + +  v +y  ie      e+     a vile + G+ G +    efl+ +r+++++++ ll++dev +G+       a +h Gi pd+ ++ k +GGglp+   a kke  +  +pa+    +Gt+ Gn la+++G+++leilk+  
  MMETSP1137-20121227|8099_1  63 SPVRAFksVGGEPVVFDRVKGSKAYDVDGNEYVDYVGTWGPAIVGHADDRVLDALKVTLEKGTSF---GAPCALENELAKMVIDAVP---SVEMVRFT-NSGTEACMGVLRLMRAYTKREKVIKFDGCYHGHADSFLVAAGSG------------VATLGLPDSPGV---TSGASASTLVAKYndIESVKALFEANKGEVAGVILEGVVGNSGFIVPDKEFLQGLRQLCDENGALLVFDEVMTGFRI-SYGGAQQHWGITPDLSCFGKVIGGGLPVGAYAGKKEiMEMVAPAGpmyQAGTLSGNPLAMTAGIKTLEILKQPG 361
                 556665324578************************************************99865...4566777777777777777...33457887.69********************************9999988854............444444443322...22333333334442234333334444556799******************************************955.456799**********************9998888835678999855468********************9854 PP

>> TIGR02407  ectoine_ectB: diaminobutyrate--2-oxoglutarate aminotransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.9   0.0     6e-27   1.9e-24      16     332 ..      73     379 ..      60     395 .. 0.80

  Alignments for each domain:
  == domain 1    score: 83.9 bits;  conditional E-value: 6e-27
   TIGR02407  16 sfptvfekakgaklldedgkeyidflagaGalnyGhnneklkealldylaedgivhsldmateakkefletfeevilkPreldykvqftgPtGtnavesalklarkvtgrenvvaftnafhGmslgslavtgnkskreeagvslsnvvrlPydgyldeevdslayleklledsssGvdlPaaviletvqgeGGlnvaskeWlrsleklcrehdillivddiqaGcGrtGtffsfeeagikPdivclsksisGiGlPlalvllkpel.dvwkPg...ehnGtfrGnnlafvaataalekyWkddelekavkkksekvkerle 332
                   p+vf++ kg+k +d+dg+ey+d++ + G    Gh ++++ +al   l++     +      a  +  + + ++++        v+ft   Gt+a    l+l r +t+re+v+ f  ++hG++ + l  +g+     +    +  v++      l  + ++++ ++ l+e + + v   a vile v g+ G  v  ke+l+ l++lc e++ ll+ d++ +G  r     + ++ gi+Pd+ c  k i+G GlP+     k+e+ ++ +P+    ++Gt+ Gn la+ a+ ++le   +  ++e+  k +++ ++  l+
  MMETSP1137-20121227|8099_1  73 GEPVVFDRVKGSKAYDVDGNEYVDYVGTWGPAIVGHADDRVLDALKVTLEKG-TSFG------APCALENELAKMVIDAVPSVEMVRFTN-SGTEACMGVLRLMRAYTKREKVIKFDGCYHGHADSFLVAAGSGVATLGL-PDSPGVTSGASASTLVAKYNDIESVKALFEANKGEV---AGVILEGVVGNSGFIVPDKEFLQGLRQLCDENGALLVFDEVMTGF-RISYGGAQQHWGITPDLSCFGKVIGG-GLPVGAYAGKKEImEMVAPAgpmYQAGTLSGNPLAMTAGIKTLEILKQPGTYEQLDKITGRLINGILD 379
                 469**************************************99987766654.3333......223333445555555555455688886.7*********************************999999998876655.344455555555666667899999999999888766...89***************************************9997.77777788999***************.****9999888852666665222689*****************9877777777666666666666665 PP

>> TIGR03251  LAT_fam: L-lysine 6-transaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.0      0.21        67      19      64 ..      76     118 ..      69     154 .. 0.82
   2 !   51.3   0.0   4.4e-17   1.4e-14     203     363 ..     224     385 ..     171     401 .. 0.82

  Alignments for each domain:
  == domain 1    score: -0.4 bits;  conditional E-value: 0.21
   TIGR03251  19 lvldleksrGsvlvdardGrryldlfsffassalGmnhPaladdae 64 
                 +v+d  + +Gs+ +d  dG++y+d  + +  + +G+    + d  +
  MMETSP1137-20121227|8099_1  76 VVFD--RVKGSKAYDV-DGNEYVDYVGTWGPAIVGHADDRVLDALK 118
                 5554..7889999985.8**********999999998877766555 PP

  == domain 2    score: 51.3 bits;  conditional E-value: 4.4e-17
   TIGR03251 203 ealaqakaafaeeeddiaaliiePiqgeGGdnhlrpeflralrklcdehdallvldevqtGvGltGkawayqqlgvkPdvvafGkktq...vcGilagrrvdevadnvfkv.ssrlnstfGGnlvdmvratrileiieeerlvdrareqGehllarleelaaefp 363
                 + ++ +ka f++++ ++a++i+e + g+ G      efl+ lr+lcde+ allv+dev tG  ++    a q+ g++Pd+ +fGk        G  ag++  e+ + v    +     t  Gn   m    + lei+++    ++  +    l + + + a+e  
  MMETSP1137-20121227|8099_1 224 NDIESVKALFEANKGEVAGVILEGVVGNSGFIVPDKEFLQGLRQLCDENGALLVFDEVMTGFRISY-GGAQQHWGITPDLSCFGKVIGgglPVGAYAGKK--EIMEMVAPAgPMYQAGTLSGNPLAMTAGIKTLEILKQPGTYEQLDKITGRLINGILDAAREAG 385
                 55778999*****************************************************99864.4699*************9764111346677765..777777644155667799999999999999999998888888877777777777777666655 PP

>> TIGR00699  GABAtrns_euk: 4-aminobutyrate aminotransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0      0.31        97      44      82 ..      78     116 ..      73     159 .. 0.77
   2 !   22.9   0.0   2.2e-08   6.9e-06     238     391 ..     226     383 ..     221     400 .. 0.86

  Alignments for each domain:
  == domain 1    score: -0.7 bits;  conditional E-value: 0.31
   TIGR00699  44 yekslGnylvdvdGnvlldlyaqiasipiGynnPallkv 82 
                 +++  G    dvdGn ++d         +G+ +  +l +
  MMETSP1137-20121227|8099_1  78 FDRVKGSKAYDVDGNEYVDYVGTWGPAIVGHADDRVLDA 116
                 5666788889*********88777777777776666655 PP

  == domain 2    score: 22.9 bits;  conditional E-value: 2.2e-08
   TIGR00699 238 leeveelikkyrkpvaaiivePiqseGGdnhasddffrklrditkkhnvvfivdevqtGvGatGklwahehwnleePadlvtfskklqta...Gyffhdeal....rPnkpyrqfntwlGdPsralllreiieeikdkdllenvaavGdylyagleelakk 391
                 +e v+ l +  + +va++i+e +  + G     ++f+++lr++   ++ + + dev tG   +    a +hw++   +dl  f k +  +   G + +++++     P+ p  q  t  G+P  +    + +e++k+    e+  ++   l++g+++ a++
  MMETSP1137-20121227|8099_1 226 IESVKALFEANKGEVAGVILEGVVGNSGFIVPDKEFLQGLRQLCDENGALLVFDEVMTGFRIS-YGGAQQHWGIT--PDLSCFGKVIGGGlpvGAYAGKKEImemvAPAGPMYQAGTLSGNPLAMTAGIKTLEILKQPGTYEQLDKITGRLINGILDAARE 383
                 67888899999999*********************************************8754.335999***96..7******98865433488998877522226999999***********9999999999999999999999999999999887765 PP

>> TIGR01822  2am3keto_CoA: 2-amino-3-ketobutyrate coenzyme A ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.0     3e-07   9.5e-05     151     296 ..     223     365 ..     147     461 .. 0.74

  Alignments for each domain:
  == domain 1    score: 19.3 bits;  conditional E-value: 3e-07
   TIGR01822 151 nadledleaklkearaagarlrliatdGvfsmdGtiap....ldeicalaekydalvlvdechatGflGatGrGsaelldvldkvdiitgtlGkalGGas.GGfttakkevvellrqrsrpylfsnsl..apavvgasikvlelleasnelrd 296
                  +d+e ++a l ea++       ++ +Gv    G+i p    l+ +++l+++ +al++ de   tGf  + G G+++  ++   +    + +Gk +GG +  G  ++kke++e++     p   + +l   p  ++a+ik+le+l++ ++ ++
  MMETSP1137-20121227|8099_1 223 YNDIESVKA-LFEANKG--EVAGVILEGVVGNSGFIVPdkefLQGLRQLCDENGALLVFDEV-MTGFRISYG-GAQQHWGITPDL----SCFGKVIGGGLpVGAYAGKKEIMEMVAPAG-PMYQAGTLsgNPLAMTAGIKTLEILKQPGTYEQ 365
                 556666655.4444444..456677899999999998755568889***************8.589988877.788888988776....567888887652466789*******98765.555555552269999**********99876543 PP

>> TIGR00858  bioF: 8-amino-7-oxononanoate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   6.2e-05     0.019     126     271 ..     215     359 ..     210     387 .. 0.71

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 6.2e-05
   TIGR00858 126 kakvlrykHndvealerlLekergerrklivtdgvFSmDGdvap....lkelvalaeryealllvDdAHgtGvlGedGrGlleefglkkeevdilvgTlsKalgs...lGavvvgsealidyLlnrartfifsT.alpPavvaaalaaleliqe 271
                  a++l+ k nd+e++++l+e+++ge  + ++ +gv    G ++p    l+ l +l+++ +all+ D+   tG   +   G  ++ g+++      ++ ++K +g+   +Ga+ +g+++++++ + +   +   T +  P +++a  ++le++++
  MMETSP1137-20121227|8099_1 215 SASTLVAKYNDIESVKALFEANKGEV-AGVILEGVVGNSGFIVPdkefLQGLRQLCDENGALLVFDEVM-TGFRISY-GGAQQHWGITP-----DLSCFGKVIGGglpVGAY-AGKKEIMEMVAPAGPMYQAGTlSGNPLAMTAGIKTLEILKQ 359
                 67889999*************99655.556679*******9998777788999**************86.5665553.58999999976.....378899999864434555.67777777665544433332223346666666666666554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (467 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       124  (0.0302292); expected 82.0 (0.02)
Passed bias filter:                      118  (0.0287665); expected 82.0 (0.02)
Passed Vit filter:                        25  (0.00609459); expected 4.1 (0.001)
Passed Fwd filter:                        13  (0.00316919); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.62u 0.17s 00:00:00.79 Elapsed: 00:00:00.73
# Mc/sec: 844.37
//
Query:       MMETSP1137-20121227|8100_1  [L=232]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.1e-09   36.2   0.4    2.7e-09   35.0   0.0    1.8  3  TIGR01068 thioredoxin: thioredoxin
  ------ inclusion threshold ------
      0.046    8.9   0.0      0.054    8.6   0.0    1.0  1  TIGR03839 termin_org_P1: adhesin P1


Domain annotation for each model (and alignments):
>> TIGR01068  thioredoxin: thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       0.8   1.6e+03      40      62 ..      13      35 ..       8      45 .. 0.62
   2 ?   -2.7   0.0       0.7   1.4e+03      42      69 ..      46      73 ..      36      74 .. 0.65
   3 !   35.0   0.0   1.3e-12   2.7e-09       4      89 ..     105     188 ..     102     202 .. 0.88

  Alignments for each domain:
  == domain 1    score: -2.9 bits;  conditional E-value: 0.8
   TIGR01068 40 akeleekvkvvKlnvdeeqeiaa 62
                a e ++++ +  +n d + e a 
  MMETSP1137-20121227|8100_1 13 AGEITQEALIRNVNNDLQAEAAV 35
                55566666666666666665554 PP

  == domain 2    score: -2.7 bits;  conditional E-value: 0.7
   TIGR01068 42 eleekvkvvKlnvdeeqeiaakygirsi 69
                  e+++++   n d+ ++ a++ +++s+
  MMETSP1137-20121227|8100_1 46 AAEKQLQIDDDNDDDFDDFANDPEVQSL 73
                4555566666666777777777777775 PP

  == domain 3    score: 35.0 bits;  conditional E-value: 1.3e-12
   TIGR01068   4 enfeetvassdklvlvDfwAeWCgpCkmlaPvleelakeleekvkvvKlnvdeeqeiaakygirsiPtlllfkngkevkrvvGakp 89 
                 e+f ++v +sd +v+v f+ +    Ck++   +  +a +  ++ k++ ln ++ +    k  ir +Ptl++fk+g   +r vG+++
  MMETSP1137-20121227|8100_1 105 EEFLKEVCASD-NVVVHFYHNEFFRCKVIDKHMRVIAPKH-KRCKFLYLNAEKAPFFVDKLMIRMLPTLVVFKDGVAGERLVGFED 188
                 66777777776.9***********************9655.57****************************************986 PP

>> TIGR03839  termin_org_P1: adhesin P1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   0.0   2.7e-05     0.054     251     365 ..      29     143 ..       2     150 .. 0.88

  Alignments for each domain:
  == domain 1    score: 8.6 bits;  conditional E-value: 2.7e-05
   TIGR03839 251 aarggasadtkakalkvevekgsdsesntqlqkndlaeapikrkeesgkivklkaekesteasesisggrwkplltteqiakekklsasivklydapysenrtavervdhidPkk 365
                  +   a+ +++  al+   ek+ + +++     +d+a+ p  ++ ++ +   lka     +a +    g+++ ++  e +++    + ++v++y + + + ++  +++  i Pk+
  MMETSP1137-20121227|8100_1  29 LQAEAAVEEAQQAALAAAAEKQLQIDDDNDDDFDDFANDPEVQSLQEKRLAALKARYMEEKAYHMQGHGEYREIVEEEFLKEVCASDNVVVHFYHNEFFRCKVIDKHMRVIAPKH 143
                 567789999******************9999*********9999999999******999999888888999*99998888888999****************99999*****996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (232 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       199  (0.0485129); expected 82.0 (0.02)
Passed bias filter:                      114  (0.0277913); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.23u 0.15s 00:00:00.38 Elapsed: 00:00:00.38
# Mc/sec: 805.83
//
Query:       MMETSP1137-20121227|8101_1  [L=388]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (388 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        71  (0.0173086); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.11s 00:00:00.39 Elapsed: 00:00:00.42
# Mc/sec: 1219.33
//
Query:       MMETSP1137-20121227|8102_1  [L=58]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       269  (0.0655778); expected 82.0 (0.02)
Passed bias filter:                      229  (0.0558264); expected 82.0 (0.02)
Passed Vit filter:                        26  (0.00633837); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.18s 00:00:00.32 Elapsed: 00:00:00.33
# Mc/sec: 231.98
//
Query:       MMETSP1137-20121227|8103_1  [L=424]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (424 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       149  (0.0363237); expected 82.0 (0.02)
Passed bias filter:                      125  (0.0304729); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.16s 00:00:00.47 Elapsed: 00:00:00.40
# Mc/sec: 1399.08
//
Query:       MMETSP1137-20121227|8104_1  [L=237]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.6e-36  123.2   2.8      2e-36  122.9   1.9    1.1  1  TIGR01071 rplO_bact: ribosomal protein L15


Domain annotation for each model (and alignments):
>> TIGR01071  rplO_bact: ribosomal protein L15
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  122.9   1.9   4.8e-40     2e-36       2     143 ..      59     206 ..      58     207 .. 0.90

  Alignments for each domain:
  == domain 1    score: 122.9 bits;  conditional E-value: 4.8e-40
   TIGR01071   2 LeeLkpakgakkkkkrvgRGigsGkGktsgrGqkGqkaRsggkvrlgFEGGqtPlyrrlPk.rgfsnk...lkkelevvnvekleklfkdgevvtlekLlekklikkknkl.vKvlgkgk..lekkltvkaekvsksakakiekaggsv 143
                 L +L+ + ga+k+k+r gRGi++G+G+++g G +Gqk+Rsg  +r+gFEGGq+PlyrrlPk +g  +    +k+ +e+++v++l+k++++ ++v++++L ek++++k++    Kv+++++   +k ltvka+++++saka+ie+ gg++
  MMETSP1137-20121227|8104_1  59 LGNLAASPGASKRKTRKGRGIAAGQGASCGFGYRGQKSRSGSGTRPGFEGGQIPLYRRLPKyVGRPTGaghKKTLYEIIKVSALNKMEDN-SEVDFAALFEKRAVSKSKYSiNKVVSSDEalTAKGLTVKAHAFTASAKAAIEQNGGKC 206
                 7899999******************************************************5454333554677799*********9888.7**************9888757****999867788********************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (237 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       106  (0.0258411); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.20u 0.14s 00:00:00.34 Elapsed: 00:00:00.33
# Mc/sec: 947.92
//
Query:       MMETSP1137-20121227|8105_1  [L=459]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   9.2e-125  414.4   8.9   4.9e-123  408.7   6.2    2.0  1  TIGR01242 26Sp45: 26S proteasome subunit P45 family
    4.5e-81  270.9   1.5    4.5e-81  270.9   1.1    1.4  2  TIGR01241 FtsH_fam: ATP-dependent metallopeptidase HflB
    2.9e-71  238.6   0.2    4.1e-71  238.1   0.1    1.1  1  TIGR01243 CDC48: AAA family ATPase, CDC48 subfamily
      7e-51  171.3   4.0    9.3e-51  170.9   0.1    1.9  2  TIGR03689 pup_AAA: proteasome ATPase
    3.8e-06   23.9   2.6     0.0026   14.5   0.0    2.7  3  TIGR00390 hslU: ATP-dependent protease HslVU, ATPase subunit
    7.2e-05   19.8   0.0    0.00014   18.8   0.0    1.4  1  TIGR00635 ruvB: Holliday junction DNA helicase RuvB
    0.00014   18.4   0.0    0.00024   17.6   0.0    1.4  1  TIGR03922 T7SS_EccA: type VII secretion AAA-ATPase EccA
    0.00024   17.9   0.1     0.0088   12.8   0.0    2.3  2  TIGR02928 TIGR02928: orc1/cdc6 family replication initiation protein
    0.00042   17.3   0.2     0.0042   14.0   0.0    2.2  2  TIGR02881 spore_V_K: stage V sporulation protein K
     0.0015   15.5   0.0     0.0028   14.5   0.0    1.4  1  TIGR00382 clpX: ATP-dependent Clp protease, ATP-binding subunit ClpX
     0.0021   14.4   3.7     0.0021   14.4   0.1    2.4  2  TIGR00763 lon: ATP-dependent protease La
  ------ inclusion threshold ------
       0.28    8.9   3.7        1.2    6.8   0.0    2.6  3  TIGR02237 recomb_radB: DNA repair and recombination protein RadB


Domain annotation for each model (and alignments):
>> TIGR01242  26Sp45: 26S proteasome subunit P45 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  408.7   6.2  1.4e-125  4.9e-123       5     363 ..      61     447 ..      58     448 .. 0.89

  Alignments for each domain:
  == domain 1    score: 408.7 bits;  conditional E-value: 1.4e-125
   TIGR01242   5 kekirkledekkllekekirlereverlrsele....rl...rsppllvavvvevld.........d........er....vvvksstGpkfvvnvskfidrkelkpGarvalnqrtlaivdvlptekdplvkaleveerpevsyediGGlekqlreireavelplkkpelfeevGieppkGvllyGppGtGktllakavaeetnatfirvvgselvkkyiGeGarlvrevfklakekapsiifideidaiaakrldsstsGdrevqrtllqllaeldGfdprgnvkviaatnrldildpallrpGrfdrlievplpdleGrleilkihtrkmklaedvdleelaklteGasGadlkaivteaGmfaireerdkvtmedflkavekv 363
                  ++ r le+e+k+l +e  rl +e ++ +++++    ++   ++ p+lva vve+ld         d        +r     v+k+st  ++ + v   ++ ++lkp   v +n+ ++ i++ lp+e d +vka+ev+e+p  ++ d+GGl+ q++e+ ea++lp+ + e fe++Gi+ppkG l+yGppGtGktl+a+a a +tna f+++ g +lv+ +iG+Ga+lvr+ f lakek p+iifide+da+++kr ds+ sGdrevqrt+l+ll ++dGf++ +n+kviaatnr+dildpallr Gr+dr ie plp+++Gr +i+ ih+rkm+ + +v++eel + t+ + Ga+lka+++eaGm a+r+er+++  edf++ +  v
  MMETSP1137-20121227|8105_1  61 AQRTRMLENEVKVLRNETARLLHEHQSQKEKIKenndKIklnKQLPYLVANVVELLDmnaeeepeeDganidldaHRtgkcCVLKTSTRQTIFLPVPGLVEPEKLKPADLVGVNKDSYLILEALPAEFDSRVKAMEVDEKPTEEFTDVGGLDTQIQELVEAIVLPMTHKERFENIGIKPPKGALMYGPPGTGKTLIARACAAQTNACFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKQPAIIFIDELDAVGTKRFDSELSGDREVQRTMLELLNQMDGFNSNDNIKVIAATNRIDILDPALLRSGRIDRKIEFPLPNEQGRARIMYIHSRKMNTSTEVNFEELGRCTDDFNGAQLKAVCVEAGMLALRNERTEIVHEDFMEGITAV 447
                 678889999999999999988888776665553222233222577999999999886433333322121111212223333578888999999999999******************************************************************************************************************************************************************************************************************************************************************************************998765 PP

>> TIGR01241  FtsH_fam: ATP-dependent metallopeptidase HflB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.1       1.5   5.2e+02     434     473 ..      61      99 ..      33     106 .. 0.58
   2 !  270.9   1.1   1.3e-83   4.5e-81      44     297 ..     194     448 ..     186     456 .. 0.94

  Alignments for each domain:
  == domain 1    score: -3.1 bits;  conditional E-value: 1.5
   TIGR01241 434 kkekeyseetakeiDeevkriieeaykkakeilkekkeel 473
                 +++ ++ e+  k + +e  r+++e +++ ke +ke+++++
  MMETSP1137-20121227|8105_1  61 AQRTRMLENEVKVLRNETARLLHE-HQSQKEKIKENNDKI 99 
                 334444444445555555555544.444455555555555 PP

  == domain 2    score: 270.9 bits;  conditional E-value: 1.3e-83
   TIGR01241  44 klleeekvkvtfkdvaGideakeelve.ivdfLknpkkftklGakiPkGvllvGpPGtGktLlakavaGeagvpffsisGsdfvemfvGvGasrvrDlfeqakknaPciifiDeiDavGrkrgaglgggndereqtLnqlLvemDGfetnegvivlaatnrpdvLDkaLlrPGrfDrqvvvdkPdlkgreeilkvhakkvklaeevdlkkvarrtpGfsGadlanlvneaallaarknkkevtlkeleeavdrvi 297
                  +  +ek++ +f+dv G+d + +elve iv  + + ++f+++G k PkG+l++GpPGtGktL+a+a+a + +  f++++G ++v+mf+G Ga+ vrD f  ak++ P+iifiDe+DavG kr  +  +g  e+++t+  lL +mDGf++n+++ v+aatnr d+LD+aLlr Gr Dr++   +P+ +gr  i+ +h++k++ ++ev+ +++ r t  f Ga+l+ ++ ea +la r++++e+  +++ e +  v 
  MMETSP1137-20121227|8105_1 194 AMEVDEKPTEEFTDVGGLDTQIQELVEaIVLPMTHKERFENIGIKPPKGALMYGPPGTGKTLIARACAAQTNACFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKQPAIIFIDELDAVGTKRFDSELSGDREVQRTMLELLNQMDGFNSNDNIKVIAATNRIDILDPALLRSGRIDRKIEFPLPNEQGRARIMYIHSRKMNTSTEVNFEELGRCTDDFNGAQLKAVCVEAGMLALRNERTEIVHEDFMEGITAVQ 448
                 3345669999***************9956677999******************************************************************************************888899********************************************************************************************************************99887665 PP

>> TIGR01243  CDC48: AAA family ATPase, CDC48 subfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  238.1   0.1   1.2e-73   4.1e-71     446     684 ..     199     439 ..     170     455 .. 0.90

  Alignments for each domain:
  == domain 1    score: 238.1 bits;  conditional E-value: 1.2e-73
   TIGR01243 446 evpnvkwediggleevkqelreavewplkakevfeklgirppkgvllfgppgtgktllakavatesganfiavrgpeilskwvgesekaireifrkarqaapaiifldeidaiapargadl..seavtdrivnqllteldgleensdvvviaatnrpdildpallrpgrldrlilvpapdeearleifkihtrslplaedvdleelakktegytgadieavvreaalaalresvksvakek 684
                 e p  ++ d+ggl+   qel ea+  p+ +ke fe +gi+ppkg l++gppgtgktl+a+a a++++a f+ + gp+++  ++g+  k +r+ f  a++  paiif+de+da+  +r  ++  +++  +r + +ll ++dg++ n+++ viaatnr dildpallr gr+dr i  p p+e+ r  i+ ih+r+++ + +v++eel + t+ + ga+++av+ ea ++alr+    + +e 
  MMETSP1137-20121227|8105_1 199 EKPTEEFTDVGGLDTQIQELVEAIVLPMTHKERFENIGIKPPKGALMYGPPGTGKTLIARACAAQTNACFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKQPAIIFIDELDAVGTKRFDSElsGDREVQRTMLELLNQMDGFNSNDNIKVIAATNRIDILDPALLRSGRIDRKIEFPLPNEQGRARIMYIHSRKMNTSTEVNFEELGRCTDDFNGAQLKAVCVEAGMLALRNERTEIVHED 439
                 678999***************************************************************************************************************87652234477899999*************************************************************************************************6554444443 PP

>> TIGR03689  pup_AAA: proteasome ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.5   0.4    0.0018       0.6       2     100 ..      63     183 ..      62     187 .. 0.83
   2 !  170.9   0.1   2.7e-53   9.3e-51     137     378 ..     158     390 ..     134     448 .. 0.82

  Alignments for each domain:
  == domain 1    score: 6.5 bits;  conditional E-value: 0.0018
   TIGR03689   2 elreleaeasslaakneklvealkaareklaelkeqldalaqPPstygtllev...................aadeetve.vftagrkm.rvavspeveaaelkaGaevrlneall.vvea 100
                 ++r le+e++ l ++ ++l++  ++ +ek++e +++++  +q P+  + ++e+                   a+++ +   + t++r+   + v   ve ++lk+ + v +n+++  ++ea
  MMETSP1137-20121227|8105_1  63 RTRMLENEVKVLRNETARLLHEHQSQKEKIKENNDKIKLNKQLPYLVANVVELldmnaeeepeedganidldAHRTGKCCvLKTSTRQTiFLPVPGLVEPEKLKPADLVGVNKDSYlILEA 183
                 678899999*******************************************999**************9985555554405577887525789999999*********999765414455 PP

  == domain 2    score: 170.9 bits;  conditional E-value: 2.7e-53
   TIGR03689 137 galaeeklraGdsllvdlkaglaleavpk...seveelvleevPdvtyadiGGldsqieqirdavelPflhkelyreydlkpPkGvllyGPPGcGktliakavanslaekvaedgeaksyflnikGPellnkyvGeterqirliferarekaaegrPvvvffdemdslfrtr.GsGvssdvet.tvvPqllaeldGveslenviviGasnredlidPailrPGrldvkirierPdaeaaadilakyl 378
                 g +  ekl++ d + v++ + l lea+p+   s v+ + ++e P   + d+GGld+qi+++ +a+ lP++hke +++ ++kpPkG l+yGPPG+Gktlia+a a+          ++++ fl++ GP+l++ ++G+  + +r  f+ a+    e +P ++f+de+d++   r  s +s d e    +  ll ++dG +s +n+ vi a+nr d++dPa+lr Gr+d ki    P++++ a i++ + 
  MMETSP1137-20121227|8105_1 158 GLVEPEKLKPADLVGVNKDSYLILEALPAefdSRVKAMEVDEKPTEEFTDVGGLDTQIQELVEAIVLPMTHKERFENIGIKPPKGALMYGPPGTGKTLIARACAA----------QTNACFLKLAGPQLVQMFIGDGAKLVRDAFALAK----EKQPAIIFIDELDAVGTKRfDSELSGDREVqRTMLELLNQMDGFNSNDNIKVIAATNRIDILDPALLRSGRIDRKIEFPLPNEQGRARIMYIHS 390
                 3344569********************973335789999***************************************************************985..........35689**********************9998766....569************888846899*99885246679************************************************9999876553 PP

>> TIGR00390  hslU: ATP-dependent protease HslVU, ATPase subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.3      0.88     3e+02     219     240 ..      70      91 ..      40     129 .. 0.51
   2 !   14.5   0.0   7.7e-06    0.0026      47      80 ..     240     273 ..     233     291 .. 0.87
   3 !    8.8   0.0   0.00044      0.15     241     284 ..     293     335 ..     283     353 .. 0.83

  Alignments for each domain:
  == domain 1    score: -2.1 bits;  conditional E-value: 0.88
   TIGR00390 219 akkvlieeeaeklvdseeikqe 240
                   kvl +e a  l +++  k++
  MMETSP1137-20121227|8105_1  70 EVKVLRNETARLLHEHQSQKEK 91 
                 2222222222222222211111 PP

  == domain 2    score: 14.5 bits;  conditional E-value: 7.7e-06
   TIGR00390  47 PknilmiGstGvGkteiarrlaklaeaPfikvea 80 
                 Pk  lm G+ G Gkt iar  a  ++a f+k+  
  MMETSP1137-20121227|8105_1 240 PKGALMYGPPGTGKTLIARACAAQTNACFLKLAG 273
                 999****************************865 PP

  == domain 3    score: 8.8 bits;  conditional E-value: 0.00044
   TIGR00390 241 avdrveesGiifideidkiakkgessgadvsreGvqrdllPive 284
                 a+ +  +  iifide+d + +k   s+    re vqr +l +++
  MMETSP1137-20121227|8105_1 293 ALAKEKQPAIIFIDELDAVGTKRFDSELSGDRE-VQRTMLELLN 335
                 566777889*************98888888887.9**9998864 PP

>> TIGR00635  ruvB: Holliday junction DNA helicase RuvB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.0   4.1e-07   0.00014      33      93 ..     243     311 ..     232     319 .. 0.77

  Alignments for each domain:
  == domain 1    score: 18.8 bits;  conditional E-value: 4.1e-07
   TIGR00635  33 vllyGPPGlGkttlakiiakelgvklkitsgpalekp..gDlaail......taleegdvlfiDeihrl 93 
                  l+yGPPG Gkt +a+  a++ ++     +gp+l +   gD a ++      ++ ++  ++fiDe+ ++
  MMETSP1137-20121227|8105_1 243 ALMYGPPGTGKTLIARACAAQTNACFLKLAGPQLVQMfiGDGAKLVrdafalAKEKQPAIIFIDELDAV 311
                 69***********************999*****9885446655554111100344556799***99877 PP

>> TIGR03922  T7SS_EccA: type VII secretion AAA-ATPase EccA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.0     7e-07   0.00024     313     390 ..     241     314 ..     193     386 .. 0.59

  Alignments for each domain:
  == domain 1    score: 17.6 bits;  conditional E-value: 7e-07
   TIGR03922 313 kHlllaGPPGtGkttiArvvakiy.aGlgvlrkpevrEvsRadligeyigeseaktneli...dkaLggvlFlDEayaLvek 390
                 k  l+ GPPGtGkt iAr+ a +  a +  l+ p        +l+  +ig+ ++   +      +    ++F+DE+ a+  k
  MMETSP1137-20121227|8105_1 241 KGALMYGPPGTGKTLIARACAAQTnACFLKLAGP--------QLVQMFIGDGAKLVRDAFalaKEKQPAIIFIDELDAVGTK 314
                 567999*************997751222223333........4455555555554443330003333456666666666555 PP

>> TIGR02928  TIGR02928: orc1/cdc6 family replication initiation protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.8   0.0   2.6e-05    0.0088      38      63 ..     238     263 ..     200     270 .. 0.74
   2 ?    2.8   0.0     0.028       9.5     124     179 ..     294     358 ..     287     385 .. 0.78

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 2.6e-05
   TIGR02928  38 srpsnvliyGktGtGKtavtkkvlke 63 
                 + p+  l+yG++GtGKt+++++   +
  MMETSP1137-20121227|8105_1 238 KPPKGALMYGPPGTGKTLIARACAAQ 263
                 3577789*************998766 PP

  == domain 2    score: 2.8 bits;  conditional E-value: 0.028
   TIGR02928 124 leeredsliivLDEiDklvkkeade..........lLyeLsraeengdlekakvsvigisndlkfl 179
                 l ++++ +ii +DE+D + +k  d+          ++ eL+    +g  ++ ++ vi+ +n +++l
  MMETSP1137-20121227|8105_1 294 LAKEKQPAIIFIDELDAVGTKRFDSelsgdrevqrTMLELLNQ-MDGFNSNDNIKVIAATNRIDIL 358
                 667888999********98554444588888999877777666.3555556899999999998876 PP

>> TIGR02881  spore_V_K: stage V sporulation protein K
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.1      0.15        50     200     253 ..      42      92 ..      27      98 .. 0.77
   2 !   14.0   0.0   1.2e-05    0.0042      13     116 ..     214     310 ..     200     352 .. 0.71

  Alignments for each domain:
  == domain 1    score: 0.6 bits;  conditional E-value: 0.15
   TIGR02881 200 eeakaklreklakvksasekefsnarlvrnliekairrqavrllkksdvskedl 253
                 ++a+ +l e +a+ +   ++    +r++ n + k +r+++ rll++++ +ke++
  MMETSP1137-20121227|8105_1  42 DDAEDELGEEIARADP--DEIAQRTRMLENEV-KVLRNETARLLHEHQSQKEKI 92 
                 5667777777776664..44456789999988.689**********99999876 PP

  == domain 2    score: 14.0 bits;  conditional E-value: 1.2e-05
   TIGR02881  13 evkelikeiyalilinekrkeeglkaekqvlhmifkGnPGtGkttvarllaklfkelnvlskGhlieveradlvGeyiGhtaqktrevi...kkalGGvlfideays 116
                 +++el++ i   ++ +e+ ++ g+k  k +l   + G PGtGkt +ar  a         +   ++++    lv  +iG+ a+ +r+     k+ +  ++fide  +
  MMETSP1137-20121227|8105_1 214 QIQELVEAIVLPMTHKERFENIGIKPPKGAL---MYGPPGTGKTLIARACAAQ-------TNACFLKLAGPQLVQMFIGDGAKLVRDAFalaKEKQPAIIFIDELDA 310
                 3344443333333333333445677666664...57************99865.......445677888899**************975222667889*****9544 PP

>> TIGR00382  clpX: ATP-dependent Clp protease, ATP-binding subunit ClpX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.0   8.3e-06    0.0028     121     219 ..     244     333 ..     225     339 .. 0.79

  Alignments for each domain:
  == domain 1    score: 14.5 bits;  conditional E-value: 8.3e-06
   TIGR00382 121 lliGptGsGktllaqtlakeldvpfaiadattlteaGyvGedvenillkllqaadydvekaekGiiyideidkiarksenasitrdvsGeGvqqallkl 219
                 l+ Gp G+Gktl+a++ a++ +  f       l +  ++G+       kl++ a    ++ +  ii+ide+d +  k  ++ ++ d     vq+++l l
  MMETSP1137-20121227|8105_1 244 LMYGPPGTGKTLIARACAAQTNACFLKLAGPQLVQ-MFIGDG-----AKLVRDAFALAKEKQPAIIFIDELDAVGTKRFDSELSGD---REVQRTMLEL 333
                 678*******************9997766667765.599987.....58999999999999*************988765544433...2355555555 PP

>> TIGR00763  lon: ATP-dependent protease La
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.5      0.17        57     228     272 ..      62     106 ..      37     135 .. 0.53
   2 !   14.4   0.1   6.1e-06    0.0021     358     385 ..     245     272 ..     239     346 .. 0.86

  Alignments for each domain:
  == domain 1    score: -0.3 bits;  conditional E-value: 0.17
   TIGR00763 228 qreylLkeqlkaikkElGeekdkkdelieklkekleelklpeevl 272
                 qr  +L++++k++++E     +++++  ek+ke  +++kl ++  
  MMETSP1137-20121227|8105_1  62 QRTRMLENEVKVLRNETARLLHEHQSQKEKIKENNDKIKLNKQLP 106
                 344456666666666544433333333334443333333333322 PP

  == domain 2    score: 14.4 bits;  conditional E-value: 6.1e-06
   TIGR00763 358 lvGPPGVGKtSlaksiAkalnrkfvrls 385
                 ++GPPG GKt +a++ A  +n +f++l+
  MMETSP1137-20121227|8105_1 245 MYGPPGTGKTLIARACAAQTNACFLKLA 272
                 79***********************986 PP

>> TIGR02237  recomb_radB: DNA repair and recombination protein RadB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.1       1.7   5.8e+02      74     125 ..      55     105 ..      38     119 .. 0.60
   2 ?    6.8   0.0    0.0035       1.2      17      39 ..     245     267 ..     242     272 .. 0.83
   3 ?    2.3   0.1     0.083        28      81     144 ..     283     349 ..     277     358 .. 0.69

  Alignments for each domain:
  == domain 1    score: -2.0 bits;  conditional E-value: 1.7
   TIGR02237  74 fevfdldeqekaiqkaskliekekadlvvvDsltalyRleksddrislklel 125
                  ++ ++ +  ++++++ k++++e a l + +  ++  ++++++d+i+l+++l
  MMETSP1137-20121227|8105_1  55 ADPDEIAQRTRMLENEVKVLRNETARL-LHEHQSQKEKIKENNDKIKLNKQL 105
                 556666666677777777777764444.345555555566666655544444 PP

  == domain 2    score: 6.8 bits;  conditional E-value: 0.0035
   TIGR02237  17 iyGpggsGKtnialilaveaaek 39 
                 +yGp+g+GKt ia   a ++ + 
  MMETSP1137-20121227|8105_1 245 MYGPPGTGKTLIARACAAQTNAC 267
                 7***********99888887665 PP

  == domain 3    score: 2.3 bits;  conditional E-value: 0.083
   TIGR02237  81 eqekaiqkaskliekekadlvvvDsl....talyRleksddr..islklelarqlslLlslArkkdlavv 144
                 + +k +++a+ l+++++  ++ +D l    t+ + +e s+dr  ++++lel +q+     +  + ++ v+
  MMETSP1137-20121227|8105_1 283 DGAKLVRDAFALAKEKQPAIIFIDELdavgTKRFDSELSGDRevQRTMLELLNQMD---GFNSNDNIKVI 349
                 55788999999999999999999887444466799999999855555556666654...44445555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (459 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       229  (0.0558264); expected 82.0 (0.02)
Passed bias filter:                      153  (0.0372989); expected 82.0 (0.02)
Passed Vit filter:                        29  (0.00706972); expected 4.1 (0.001)
Passed Fwd filter:                        12  (0.0029254); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.54u 0.18s 00:00:00.72 Elapsed: 00:00:00.73
# Mc/sec: 829.90
//
Query:       MMETSP1137-20121227|8106_1  [L=284]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      1e-21   75.1   0.0    1.3e-21   74.6   0.0    1.2  1  TIGR02024 FtcD: glutamate formiminotransferase


Domain annotation for each model (and alignments):
>> TIGR02024  FtcD: glutamate formiminotransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.6   0.0   3.3e-25   1.3e-21      27     209 ..      26     217 ..      11     283 .. 0.78

  Alignments for each domain:
  == domain 1    score: 74.6 bits;  conditional E-value: 3.3e-25
   TIGR02024  27 ikkvdnvklldvdsdadhnrsvitlvgepekvveaalklakvaaelidlsk..hkGehPrmGavdviPfvPvkdvt.......veecvelakelGkrlgeelgvPvylyeeaaekeerktlaairkgey.ealkeklkea...kWkPdfGPsevnpkaGatavGarkfliafnvnldtsnleiakkiakavrekgg 209
                 ++  + v l+dv +d    rs + lvge+  +++aa  +a  a++lidl++  h   hPr Gavd++ f+P+++ +       + +c  la +lG  lg + g  v ly+       r  l a r+  +  +++    +    +  Pd GP e + +aG+++vGa + +  fnv ++   l  +k+ a a+r++ g
  MMETSP1137-20121227|8106_1  26 AAAFPAVSLVDVFTDDTYARSSLKLVGETGPLLQAARLAALEAVRLIDLQNepHPAPHPRCGAVDMVAFMPLSEASatdlapeLRTCEDLATQLGVSLG-DAGCSVLLYGPQR---GRTLLEARRHTSFfKSVRADAPNRvclHVPPDAGPAEPSQRAGVSVVGAMTYVTNFNVQIESASLTECKAAATALRTAMG 217
                 456789*******************************************977799*****************99862222222458999**********.99*******9643...344444444443313333333222222467**********************************************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (284 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        96  (0.0234032); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.22u 0.16s 00:00:00.38 Elapsed: 00:00:00.38
# Mc/sec: 986.44
//
Query:       MMETSP1137-20121227|8107_1  [L=487]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (487 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        68  (0.0165773); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.18s 00:00:00.51 Elapsed: 00:00:00.37
# Mc/sec: 1737.26
//
Query:       MMETSP1137-20121227|8108_1  [L=134]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (134 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        59  (0.0143832); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.15s 00:00:00.32 Elapsed: 00:00:00.38
# Mc/sec: 465.44
//
Query:       MMETSP1137-20121227|8109_1  [L=510]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0088   12.6   0.0      0.023   11.3   0.0    1.7  1  TIGR00858 bioF: 8-amino-7-oxononanoate synthase
  ------ inclusion threshold ------
      0.011   12.6   0.0       0.02   11.8   0.0    1.5  1  TIGR01977 am_tr_V_EF2568: cysteine desulfurase family protein


Domain annotation for each model (and alignments):
>> TIGR00858  bioF: 8-amino-7-oxononanoate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.3   0.0   1.1e-05     0.023      89     232 ..     144     293 ..     134     303 .. 0.64

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 1.1e-05
   TIGR00858  89 sGylaNlgvisalvekedlvlsD......klnHAslidgarLskakv....lrykHndveal..erlLekerg.errklivtdgvFSmDGdvaplkelvalaeryealllvDdAHgtGvlGedGrGlleefglkkeevdilvgTlsKal.gslGavvv 232
                 sG  aN  v sa+++ +d ++        +l+H   +d  ++s ++v    + y+ n+ +     ++Le++++  r kli++ +  S     ++ k++ +++++ +a+ll D AH  G +++   G++ + +   e  di+++T  K+l g  Ga++ 
  MMETSP1137-20121227|8109_1 144 SGSPANFCVFSAVLKPHDRLMGLdlphggHLSHGFQTDTKKISMVSVyfetMPYRLNEATGYidYDALEESAKlFRPKLIIAGT--SAYSRAIDYKRMREICDKVGAYLLADMAHISGLVAA---GVVPT-PF--EYADIVTTTTHKSLrGPRGAMIF 293
                 666677777777777666555430111113444444555555555431111345544444331134677777778888888765..666688999************************999...66543.22..23468888888887566787776 PP

>> TIGR01977  am_tr_V_EF2568: cysteine desulfurase family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   9.6e-06      0.02     122     212 ..     203     295 ..     194     409 .. 0.80

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 9.6e-06
   TIGR01977 122 eglvdvekikkaikkdtklivlshaSNvtGtilpieeiaelakekgilflvDaaqtaGvleidvek...laidllaftGHKgLlgpqGigglli 212
                 +g +d + +++  k     ++++ +S    + ++ + + e++ + g  +l+D+a   G++   v     +  d++  t HK+L gp G   ++ 
  MMETSP1137-20121227|8109_1 203 TGYIDYDALEESAKLFRPKLIIAGTSAYSRA-IDYKRMREICDKVGAYLLADMAHISGLVAAGVVPtpfEYADIVTTTTHKSLRGPRGAMIFYR 295
                 6677777777777665444445555554444.46788999***************9999987775511145688999***********988875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (510 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       140  (0.0341297); expected 82.0 (0.02)
Passed bias filter:                      129  (0.0314481); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.14s 00:00:00.54 Elapsed: 00:00:00.54
# Mc/sec: 1246.56
//
Query:       MMETSP1137-20121227|8110_1  [L=438]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      5e-06   23.6   0.1    1.4e-05   22.1   0.0    1.6  2  TIGR01622 SF-CC1: splicing factor, CC1-like family
     0.0011   16.0   0.0      0.002   15.1   0.0    1.4  1  TIGR01628 PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family
  ------ inclusion threshold ------
      0.014   12.4   0.0      0.022   11.7   0.0    1.2  1  TIGR01721 AMN-like: putative AMP nucleosidase
      0.015   12.1   0.0      0.021   11.6   0.0    1.1  1  TIGR01649 hnRNP-L_PTB: hnRNP-L/PTB/hephaestus splicing factor family


Domain annotation for each model (and alignments):
>> TIGR01622  SF-CC1: splicing factor, CC1-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.5      0.27   2.8e+02      53      80 ..     258     285 ..     247     299 .. 0.44
   2 !   22.1   0.0   1.4e-08   1.4e-05     212     295 ..     303     381 ..     287     407 .. 0.77

  Alignments for each domain:
  == domain 1    score: -2.0 bits;  conditional E-value: 0.27
   TIGR01622  53 drdrdkyrdrerrsrkrreserererek 80 
                 +  r+  rd +r sr++  + r++  ++
  MMETSP1137-20121227|8110_1 258 EEIRETLRDSQRGSRNDAIRARYHGTKE 285
                 2333333444444444443333333333 PP

  == domain 2    score: 22.1 bits;  conditional E-value: 1.4e-08
   TIGR01622 212 dipnsiadlkLYvGnlhfnitEqeLrqiFepFGeielvqlqkDpetGrskGyGFiqFsdaeeakeAleklNG.lelAGReikvgl 295
                 + p+  +   L+vG+l  +it q++++ F +FGei+ ++l+ +           ++Fs    a eA + l   l + G  +k   
  MMETSP1137-20121227|8110_1 303 TPPEDEGVCSLWVGGLTPSITQQDIKDAFYSFGEILEIKLMSERRC------ALVTFSLRRSAEEAAKSLYRkLSIKGTALKLWW 381
                 5677788999*******************************98776......678888888888887777666777777776655 PP

>> TIGR01628  PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0     2e-06     0.002      89     147 ..     311     364 ..     283     390 .. 0.61

  Alignments for each domain:
  == domain 1    score: 15.1 bits;  conditional E-value: 2e-06
   TIGR01628  89 gNifvKnLdksidnkaLfdtFskfGnilsckvatdeeGkSkgYgfvhfedeesAkeAie 147
                   + v  L  si+++ ++d F +fG+il +k++ +        + v f    sA+eA +
  MMETSP1137-20121227|8110_1 311 CSLWVGGLTPSITQQDIKDAFYSFGEILEIKLMSERRC-----ALVTFSLRRSAEEAAK 364
                 44444445555555555555555555555555444333.....4444444444444433 PP

>> TIGR01721  AMN-like: putative AMP nucleosidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   2.2e-05     0.022     104     147 ..     167     210 ..     158     222 .. 0.91

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 2.2e-05
   TIGR01721 104 qvGdylvpvasirgeGtsdaylpeevpalanfvvqkaitevlee 147
                 ++G  +  +a++ ++ ts  y+  ++p l +f v+++ t v+++
  MMETSP1137-20121227|8110_1 167 SIGHSFEKLAALSRNNTSTPYYDRNLPKLCSFWVRQSCTRVVNN 210
                 68899999*********************************987 PP

>> TIGR01649  hnRNP-L_PTB: hnRNP-L/PTB/hephaestus splicing factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0     2e-05     0.021       7      91 ..     315     398 ..     278     423 .. 0.82

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 2e-05
   TIGR01649   7 vRnlpeevveadlvelliefGkvsyvlvlkgkrqAlvEfedeesAkalVnfatsvpiqirGrtvfvqyStskelkrdgnakalsd 91 
                 v +l+ ++++ d+ ++   fG++  + ++ ++r Alv f    sA+++ +     ++ i+G  + + ++ s+  k +++a a+  
  MMETSP1137-20121227|8110_1 315 VGGLTPSITQQDIKDAFYSFGEILEIKLMSERRCALVTFSLRRSAEEAAKSL-YRKLSIKGTALKLWWAKSQLSKDNEEASAYLS 398
                 6678999999******************************999999987655.45678888888888877776555555555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (438 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       107  (0.0260848); expected 82.0 (0.02)
Passed bias filter:                       98  (0.0238908); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.35u 0.16s 00:00:00.51 Elapsed: 00:00:00.52
# Mc/sec: 1111.75
//
Query:       MMETSP1137-20121227|8111_1  [L=481]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (481 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        99  (0.0241346); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.13s 00:00:00.45 Elapsed: 00:00:00.49
# Mc/sec: 1295.65
//
Query:       MMETSP1137-20121227|8113_1  [L=563]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   3.1e-115  383.1   0.0   3.8e-115  382.9   0.0    1.1  1  TIGR01161 purK: phosphoribosylaminoimidazole carboxylase, ATPase subunit
    6.8e-45  150.2   6.1    1.8e-30  103.4   1.2    4.3  4  TIGR01162 purE: phosphoribosylaminoimidazole carboxylase, catalytic subunit
    9.7e-45  150.9   4.1    1.4e-44  150.3   2.8    1.2  1  TIGR01142 purT: phosphoribosylglycinamide formyltransferase 2
    1.1e-09   34.2   0.2    1.6e-09   33.7   0.1    1.1  1  TIGR01235 pyruv_carbox: pyruvate carboxylase
    1.1e-06   25.5   0.1    1.9e-06   24.8   0.1    1.3  1  TIGR00514 accC: acetyl-CoA carboxylase, biotin carboxylase subunit
    2.6e-05   19.8   0.1    3.7e-05   19.4   0.1    1.1  1  TIGR01369 CPSaseII_lrg: carbamoyl-phosphate synthase, large subunit
     0.0001   17.9   0.0    0.00014   17.5   0.0    1.1  1  TIGR02712 urea_carbox: urea carboxylase
    0.00013   18.8   0.0    0.00035   17.5   0.0    1.6  1  TIGR01205 D_ala_D_alaTIGR: D-alanine--D-alanine ligase
    0.00016   17.6   0.0    0.00025   17.0   0.0    1.2  1  TIGR02068 cya_phycin_syn: cyanophycin synthetase
     0.0012   16.1   0.0      0.002   15.4   0.0    1.3  1  TIGR00768 rimK_fam: alpha-L-glutamate ligases, RimK family
     0.0039   14.1   0.0      0.009   13.0   0.0    1.6  1  TIGR02144 LysX_arch: lysine biosynthesis enzyme LysX


Domain annotation for each model (and alignments):
>> TIGR01161  purK: phosphoribosylaminoimidazole carboxylase, ATPase subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  382.9   0.0    1e-117  3.8e-115       2     359 ..       9     372 ..       8     375 .. 0.96

  Alignments for each domain:
  == domain 1    score: 382.9 bits;  conditional E-value: 1e-117
   TIGR01161   2 vgilGgGQLgrmlalaakklgikvavleaea.espakqvadeevlasftdpeaieelaekcdviTleiEhvdeeaLekleakg.vkvapspealallqdkltqkqllqkl.glavpeflvelkeeeelekaleelglpvvlKarkggYDGrGqfvikseeeleqalkalgdk...elivEefvkfekElsvivaRskeGevafyPvvenlqkdgilrlvvapaalpeklqkkaeelarklveeldlvGvlavElFlledgelLvNElApRvHNsGHytldacetSQFeqhlraildlplgstelllp.avmvNllGteesdeeeelleellalpgaklhlYgKaevrpgRKlGHvnlvksdkeel 359
                 +g+lGgGQLgrm+a+aa+++g++++vl+++   spa qv  + +++sftdp +i+el+   dviT+eiEh+d+ +L++l+a g v+v+p p++l+++qdkl+qk++l+k  g+++ +f+  ++++e++ k +ee g+p++lKar+ +YDGrG+ v++  +e+ +a ++l+++   +l+vE++  fe El+v+vaRs++G+v++yP+v + q+  +++ v+apa +  +++++a+++a++++ +++ +G+++vElF + dg++L+NE+ApR+HNsGHytldac+t Q e hlra+l++plg+ ++++   +m+N++G+ e +++    +++ a+p a++h+YgKa  + +RK+GH+n+++s+++e 
  MMETSP1137-20121227|8113_1   9 LGVLGGGQLGRMMAQAASRIGVSMTVLDPAGlGSPAGQVCGKALEGSFTDPVKIKELSTMVDVITVEIEHIDTAMLTELAACGvVQVHPAPATLRIIQDKLVQKRHLSKIdGVKLGDFAE-AESAEAVLKIAEEWGYPLMLKARTFAYDGRGNAVVNTASEVASAFAQLSQEgkvALYVERWCAFECELAVMVARSVDGKVVAYPTVVTEQRHSMCHAVIAPAEVSLETAASAKAIASAAISSFEGAGIFGVELFAMADGSVLLNEIAPRPHNSGHYTLDACYTEQHEMHLRAVLGMPLGDPSMKVEaVAMLNVIGDGELSTTIAPIARAMAMPRASVHWYGKAPPKARRKMGHINVCASSVAEA 372
                 79**************************985379***********************************************9999**********************99648*******5.79***************************************99999998877889*********************************************************************************************************************************99567******998899999999********************************99886 PP

>> TIGR01162  purE: phosphoribosylaminoimidazole carboxylase, catalytic subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.1      0.23        85      66     122 ..     195     250 ..     166     272 .. 0.70
   2 !   31.3   0.0   7.4e-11   2.8e-08       1      33 [.     393     425 ..     393     429 .. 0.96
   3 !   13.9   0.0   1.7e-05    0.0062       8      34 ..     430     456 ..     426     461 .. 0.91
   4 !  103.4   1.2   4.7e-33   1.8e-30      68     155 ..     461     548 ..     458     549 .. 0.97

  Alignments for each domain:
  == domain 1    score: 0.5 bits;  conditional E-value: 0.23
   TIGR01162  66 hLpgmvaaltelPVigvPvqskalsgldsllSivqmPsGvpvatvaigka.kNAalla 122
                 +L+ mva + +  V++ P  ++  +   s+   v  P+ v   t a  ka + Aa+ +
  MMETSP1137-20121227|8113_1 195 ELAVMVARSVDGKVVAYPTVVT--EQRHSMCHAVIAPAEVSLETAASAKAiASAAISS 250
                 5666777777777777776666..5666777777777777777777777754444443 PP

  == domain 2    score: 31.3 bits;  conditional E-value: 7.4e-11
   TIGR01162   1 vviimGsksDlevmkkaaeileelgipyelkvv 33 
                 v++imGs+sDl++m+ aaeile++g+p+el++v
  MMETSP1137-20121227|8113_1 393 VGVIMGSDSDLPTMRAAAEILEHFGVPFELTIV 425
                 89*****************************98 PP

  == domain 3    score: 13.9 bits;  conditional E-value: 1.7e-05
   TIGR01162   8 ksDlevmkkaaeileelgipyelkvvS 34 
                 +sDl++m+ aaeile++g+p+el++ +
  MMETSP1137-20121227|8113_1 430 DSDLPTMRAAAEILEHFGVPFELTIXA 456
                 8**********************9976 PP

  == domain 4    score: 103.4 bits;  conditional E-value: 4.7e-33
   TIGR01162  68 pgmvaaltelPVigvPvqskalsgldsllSivqmPsGvpvatvaigkakNAallaaqiLalkdeelaeklkelreakkeevlkkskkl 155
                 pgm aa+t+lPVigvPv++++lsg+dsllSivqmP+Gvpvatvaig+a+NA+lla+++L++ d +l+  ++++ ++++ evl+k ++l
  MMETSP1137-20121227|8113_1 461 PGMAAAMTPLPVIGVPVKTSTLSGNDSLLSIVQMPKGVPVATVAIGNAANAGLLAVRMLGMGDANLRGAMAAYMKKQEGEVLSKVQRL 548
                 9********************************************************************************9987765 PP

>> TIGR01142  purT: phosphoribosylglycinamide formyltransferase 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  150.3   2.8   3.8e-47   1.4e-44       4     368 ..      11     374 ..       8     380 .. 0.89

  Alignments for each domain:
  == domain 1    score: 150.3 bits;  conditional E-value: 3.8e-47
   TIGR01142   4 LlGsgelgkevaieaqrLGveviavDry.adaPamqvahrsvvvdmlDadalravierekPdfivpeieaiatdaLlelekeg.yevvPnaratkltmnreglrrlaaeelglptakyefadsleeleeavekiGfPcvvkp.vmsssGkGqsvvkgpediekaWeeakegargsaerviveefidfdveitlltvravdg.vvefcaPiGhrqedgdykesWqPqelsekaleeakeiakrvvdaLGGlGlfGvelfvkgd.evifsevsprPhdtglvtlisqelsefelhvrailGlpideikqlsPaasavikakeeae.kvavegleealsvpetdvrlfGkPeakvgrrlgvaLataesveeare 368
                 +lG g+lg+ +a +a r+Gv +   D    ++Pa qv  ++   + +D  +++++      d+i  eie i t +L el + g ++v P+    ++  ++   +r + +  g++   +  a+s e + + +e+ G+P++ k+   +  G+G++vv+++ ++++a+ +  +++++    + ve +  f++e+++++ r+vdg vv+++  +   q ++  ++   P+e+s ++ ++ak+ia   ++ + G+G+fGvelf   d  v+++e++prPh++g  tl +    + e+h+ra+lG+p++   + +  a a++++  ++e +++++ ++ a+++p ++v  +Gk   k++r++g     a+sv+ear+
  MMETSP1137-20121227|8113_1  11 VLGGGQLGRMMAQAASRIGVSMTVLDPAgLGSPAGQVCGKALEGSFTDPVKIKELST--MVDVITVEIEHIDTAMLTELAACGvVQVHPAPATLRIIQDKLVQKRHLSKIDGVKLGDFAEAESAEAVLKIAEEWGYPLMLKArTFAYDGRGNAVVNTASEVASAFAQLSQEGKV---ALYVERWCAFECELAVMVARSVDGkVVAYPT-VVTEQRHSMCHAVIAPAEVSLETAASAKAIASAAISSFEGAGIFGVELFAMADgSVLLNEIAPRPHNSGHYTLDACYTEQHEMHLRAVLGMPLGDPSM-KVEAVAMLNVIGDGElSTTIAPIARAMAMPRASVHWYGKAPPKARRKMGHINVCASSVAEARS 374
                 69***********************9752699******************9999854..579*********************4556666666688888888899999999*****************************98457889*****************998888776...589*********************5666665.556899999****************************************8877479*************************************96555.4455555665555442677888***************************************96 PP

>> TIGR01235  pyruv_carbox: pyruvate carboxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.7   0.1   4.2e-12   1.6e-09      95     292 ..      87     277 ..      75     286 .. 0.81

  Alignments for each domain:
  == domain 1    score: 33.7 bits;  conditional E-value: 4.2e-12
   TIGR01235  95 vekaGivfiGPkaevldqlGdk.vaarelaikagvPvvPgtdgpvetleevldfakaiGyPvilka.ayGGGGrGmrvvrseeevadaferakseakaafGndevyveklierpkhievqllgdkaGnvvhlferdcsvqrrhqkvvevaPakslsrevrdklaeaavklakevnyinaGt..veflvdedtkfyfievnpr 292
                     G+v + P + +l+ + dk v+ r+l++  gv +  g  + +e+ e+vl++a++ GyP++lka ++   GrG  vv   +eva af + ++e k a     +yve+       + v +    +G vv  +    + qr       +aPa+     +  +  ++a++ a   ++++aG   ve +  +d+   + e+ pr
  MMETSP1137-20121227|8113_1  87 LAACGVVQVHPAPATLRIIQDKlVQKRHLSKIDGVKL--GDFAEAESAEAVLKIAEEWGYPLMLKArTFAYDGRGNAVVNTASEVASAFAQLSQEGKVA-----LYVERWCAFECELAVMVARSVDGKVVA-YPTVVTEQRHSMCHAVIAPAEVS---LETAASAKAIASAAISSFEGAGIfgVELFAMADGSVLLNEIAPR 277
                 566799****************456666766667765..67778999******************966999***********************97765.....79***9999999999999999999996.77778888888777888888642...33445667777777788888885337777777777777777776 PP

>> TIGR00514  accC: acetyl-CoA carboxylase, biotin carboxylase subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.8   0.1   5.1e-09   1.9e-06      95     192 ..      87     184 ..      77     259 .. 0.84

  Alignments for each domain:
  == domain 1    score: 24.8 bits;  conditional E-value: 5.1e-09
   TIGR00514  95 veesgltfiGpsaeairlmGdkvsaketmkkagvpvvpGsdGlvedveeaveiakeiGypviikata.GGGGrGlrvvreedelvkslkaakaeakaaf 192
                  + +g++ + p + ++r++ dk + k+ + k++     G     e+ e  ++ia+e Gyp+++ka +    GrG  vv +  e++ ++++  +e k a+
  MMETSP1137-20121227|8113_1  87 LAACGVVQVHPAPATLRIIQDKLVQKRHLSKIDGVK-LGDFAEAESAEAVLKIAEEWGYPLMLKARTfAYDGRGNAVVNTASEVASAFAQLSQEGKVAL 184
                 45789999****************999999886433.36666778888999**************762679***********************99885 PP

>> TIGR01369  CPSaseII_lrg: carbamoyl-phosphate synthase, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.1   9.8e-08   3.7e-05     623     844 ..      61     281 ..      55     321 .. 0.79

  Alignments for each domain:
  == domain 1    score: 19.4 bits;  conditional E-value: 9.8e-08
   TIGR01369 623 diiekekvegvivqlgGqtalnlakeleeagvkilGtsaesidraEdRekFsklldel.gikqpkgkeatsveeakeiakeigyPvlvRp.syvlgGrameiveneeeleryleeavevskekPvlidkyledavEvdvDav.adgeevliagileHiEeaGvHsGDstlvlppqklseevkkkikeivkkiakelkvkGllniq.fvvkdeevyviEvnvRasRt 844
                 +i e + +  vi+     + + + +el++ gv  +   ++++ ++ d+   ++ l ++ g+k  +++ea+s e + +ia+e gyP+++++  +   Gr+ ++v+   e+++ + + ++   +  + ++++     E+ v +  + +++v+++     + +   Hs   +++ p+ ++s e+  + k+i+++   +++  G++ +  f++ d++v + E+ +R   +
  MMETSP1137-20121227|8113_1  61 KIKELSTMVDVITVEIEHIDTAMLTELAACGVVQVHPAPATLRIIQDKLVQKRHLSKIdGVKLGDFAEAESAEAVLKIAEEWGYPLMLKArTFAYDGRGNAVVNTASEVASAFAQLSQEG-KVALYVERWCAFECELAVMVArSVDGKVVAYPT---VVTEQRHSMCHAVIAPA-EVSLETAASAKAIASAAISSFEGAGIFGVElFAMADGSVLLNEIAPRPHNS 281
                 566666666777777777888888899999988889999999999999999999999945999*************************9747999****************999987555.677999**9986666665432223334443333...22334588766666665.99***************************85788899***99*99997655 PP

>> TIGR02712  urea_carbox: urea carboxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.0   3.9e-07   0.00014      92     220 ..      85     209 ..      78     223 .. 0.81

  Alignments for each domain:
  == domain 1    score: 17.5 bits;  conditional E-value: 3.9e-07
   TIGR02712  92 eaceaagivfvGPtpeqlrklGlkh.tarelaeaagvPllpGtgllesleealeaaeeigyPvmlks.taGGGGiGlqkvdsaeeleeafesvkrlgesffsdagvflekfvekarhvevqilGdgkGkvv 220
                  +++a g+v v P+p +lr +  k  + r+l++  gv l + ++  es+e+ l+ aee gyP+mlk+ t    G G   v+ a+e+++af ++ + g+       +++e++ +    + v +     Gkvv
  MMETSP1137-20121227|8113_1  85 TELAACGVVQVHPAPATLRIIQDKLvQKRHLSKIDGVKLGDFAE-AESAEAVLKIAEEWGYPLMLKArTFAYDGRGNAVVNTASEVASAFAQLSQEGKV-----ALYVERWCAFECELAVMVARSVDGKVV 209
                 5678899**************999625799********998877.6999*****************9456789******************99888765.....456666655555555555555555555 PP

>> TIGR01205  D_ala_D_alaTIGR: D-alanine--D-alanine ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.0   9.4e-07   0.00035      95     299 ..      96     290 ..      82     300 .. 0.76

  Alignments for each domain:
  == domain 1    score: 17.5 bits;  conditional E-value: 9.4e-07
   TIGR01205  95 GsgvlaSalsmdKlltKlllka.lglpvadyavlerkeekseeaekekleklglpvivKpareG.SSvGvskvkseeeleealeeafeyde.evlveea.ikgrelevsvlekeealpiieiveekekedFydYeaKYldgsaelvipaelseeeeekikelalkaykalgcrglaRvDfflekegeiylnEiNtiPGmtaislfpkla 299
                 ++  +   +  dKl+ K+ l++  g++  d+a  e      +ea  + +e+ g+p++ K++       G ++v++ +e+++a+++  +  +  + ve++   + el+v v + +   ++++ ++  +       e++  +  + ++ pae+s e +++ k++a  a++  + +g+  v+ f  ++g ++lnEi + P    ++ ++ + 
  MMETSP1137-20121227|8113_1  96 HPAPATLRIIQDKLVQKRHLSKiDGVKLGDFAEAE---S--AEAVLKIAEEWGYPLMLKARTFAyDGRGNAVVNTASEVASAFAQLSQEGKvALYVERWcAFECELAVMVAR-SVDGKVVAYPTVVT-------EQR-HSMCHAVIAPAEVSLETAASAKAIASAAISSFEGAGIFGVELFAMADGSVLLNEIAPRPHNSGHYTLDACY 290
                 55555556678999999877662689****99762...2..2223457889********98744145799**********99988766554167799996667788888877.33345555555555.......333.445588999************************************9************9888777776655 PP

>> TIGR02068  cya_phycin_syn: cyanophycin synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.0   6.7e-07   0.00025     209     310 ..     103     210 ..      97     228 .. 0.81

  Alignments for each domain:
  == domain 1    score: 17.0 bits;  conditional E-value: 6.7e-07
   TIGR02068 209 eiasDkeltkklLka.aGvPvPeGtvvqsaeeaeeaaeelGyPvvikPld.GnhGrGvtiniesreeiesayeaakees.seviverfikGr.dhrlLv...vgeklva 310
                  i +Dk + k+ L++  Gv       ++sae++ ++aee GyP+++k +    +GrG ++ +++  e+ sa+++ ++e+   + ver+   + +  ++v   v++k+va
  MMETSP1137-20121227|8113_1 103 RIIQDKLVQKRHLSKiDGVKLGDFAEAESAEAVLKIAEEWGYPLMLKARTfAYDGRGNAV-VNTASEVASAFAQLSQEGkVALYVERWCAFEcELAVMVarsVDGKVVA 210
                 578999999998876269999999999********************9983568***887.89***********9999934678***9864325666665556777776 PP

>> TIGR00768  rimK_fam: alpha-L-glutamate ligases, RimK family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   5.3e-06     0.002      57     255 ..      76     278 ..      18     284 .. 0.71

  Alignments for each domain:
  == domain 1    score: 15.4 bits;  conditional E-value: 5.3e-06
   TIGR00768  57 ssdrglavlraleslGveviNssqa.ienagdKllssalLak.aglplpktlvagseeeakklieeigfPvvlKp.vfGswGklvvlvedkqeaekllealeqlkekykvflvQeyikksggrdiRvfV...vgdevvaaiyrikseefrsNlarGgkaekcelteei..eelaikaakal.gldvagiDllesedkgllvlEvNasv 255
                   + ++a+l  l + Gv  + +  a +   +dKl+    L+k  g+ l + + a+s e++ k++ee g+P+ lK  +f   G++ + v++ +e+++    l q+++     +v  +   + +++  v+V   v+++vva       e+  s ++   ++++++l+ +   + +a  a   + g ++ g+ l+   d+++l++E+ + +
  MMETSP1137-20121227|8113_1  76 IEHIDTAMLTELAACGVVQVHPAPAtLRIIQDKLVQKRHLSKiDGVKLGDFAEAESAEAVLKIAEEWGYPLMLKArTFAYDGRGNAVVNTASEVASAFAQLSQEGK--VALYVERWC--AFECELAVMVarsVDGKVVAYPTV-VTEQRHSMCHAVIAPAEVSLETAAsaKAIASAAISSFeGAGIFGVELFAMADGSVLLNEIAPRP 278
                 4556677888888889888877555166689*********99679*****************************6489999********99999999999998883..444555554..444566666655599999975444.5555566677776666666665541155555554444256799999999999999999998765 PP

>> TIGR02144  LysX_arch: lysine biosynthesis enzyme LysX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   0.0   2.4e-05     0.009      67     130 ..      86     151 ..      51     186 .. 0.78

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 2.4e-05
   TIGR02144  67 lleelGvkvinss.eviiacgdKvfttlkLak.agvPtPktivafdkeaalklaeelGyPvvlKPv 130
                  l ++Gv  + ++  ++   +dK++ + +L+k  gv   + + a + ea+lk+aee GyP++lK  
  MMETSP1137-20121227|8113_1  86 ELAACGVVQVHPApATLRIIQDKLVQKRHLSKiDGVKLGDFAEAESAEAVLKIAEEWGYPLMLKAR 151
                 34567888887652678889**********99569****************************975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (563 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       154  (0.0375427); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                        20  (0.00487567); expected 4.1 (0.001)
Passed Fwd filter:                        11  (0.00268162); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.56u 0.17s 00:00:00.73 Elapsed: 00:00:00.53
# Mc/sec: 1402.07
//
Query:       MMETSP1137-20121227|8114_1  [L=170]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.99    5.6  11.5        1.2    5.4   7.9    1.0  1  TIGR01642 U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor


Domain annotation for each model (and alignments):
>> TIGR01642  U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   7.9   0.00029       1.2      35     118 ..      14      94 ..       9     133 .. 0.51

  Alignments for each domain:
  == domain 1    score: 5.4 bits;  conditional E-value: 0.00029
   TIGR01642  35 RdRdrrdrrrsrrkdsRdRdrrrydsrsissleedsrrrSRdrirrrsrsssseskerrrsrkrsssnekkkddkkrslwdvkp 118
                 R R+  +r r   +d R  +  r++ +s ++++ + +rr  + ++++++ +s  s    +   ++ +++++k++kkr  w+  +
  MMETSP1137-20121227|8114_1  14 RTRKISERMRVFDEDTRR-EITRRRLESLEKDNWQEERRKEEDEDEEEYVLSASSG--DEVAVSAAKKQRRKKQKKRDAWNASQ 94 
                 555555666666555543.2233333333333333333333333444444443333..33444555566666677777776543 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (170 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       223  (0.0543637); expected 82.0 (0.02)
Passed bias filter:                      133  (0.0324232); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.21u 0.19s 00:00:00.40 Elapsed: 00:00:00.81
# Mc/sec: 277.01
//
Query:       MMETSP1137-20121227|8116_1  [L=208]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (208 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       164  (0.0399805); expected 82.0 (0.02)
Passed bias filter:                      104  (0.0253535); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.14s 00:00:00.35 Elapsed: 00:00:00.43
# Mc/sec: 638.46
//
Query:       MMETSP1137-20121227|8117_1  [L=270]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-94  313.2   0.1    1.7e-94  312.9   0.1    1.1  1  TIGR01163 rpe: ribulose-phosphate 3-epimerase
    3.6e-07   27.9   0.1    6.9e-05   20.4   0.0    2.3  2  TIGR03128 RuMP_HxlA: 3-hexulose-6-phosphate synthase
    0.00017   19.0   0.0    0.00028   18.3   0.0    1.3  1  TIGR01334 modD: modD protein
     0.0012   16.0   0.0     0.0043   14.2   0.0    1.9  2  TIGR00693 thiE: thiamine-phosphate pyrophosphorylase
     0.0022   15.1   0.0      0.048   10.7   0.0    2.3  2  TIGR00078 nadC: nicotinate-nucleotide diphosphorylase (carboxylating)


Domain annotation for each model (and alignments):
>> TIGR01163  rpe: ribulose-phosphate 3-epimerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  312.9   0.1   2.1e-97   1.7e-94       2     211 .]      45     255 ..      44     255 .. 0.99

  Alignments for each domain:
  == domain 1    score: 312.9 bits;  conditional E-value: 2.1e-97
   TIGR01163   2 iapsilsadfarlgeevkkveeaGadliHvDvmDghfvPnltlGpavlealrkl.tklpldvHlmvenvdkyiekfakagadlitvHveasehikrllklikelGvkagvvlnPatplealeevlekvdlvllmsvnPGFggqkFipevlekirevrklidekekeilievDGGvkeeniaevaeaGadvlvagsaifkaddykeaikklr 211
                 iapsilsa fa+lg+ev+ v +aGad++H+DvmD+h+vPnlt+Gp+v++alr+  +++p+dvHlmv++vd++i +fa+aga++it+H ea+ hi+r+l+li+ +G+k+g+v+nPat+l+ l++v++kvd+vllmsvnPGFggqkFip++l+k+re+rklide++++i +e+DGGv   niaevaeaGad++vagsaif+++dyke+i+k+r
  MMETSP1137-20121227|8117_1  45 IAPSILSAXFANLGKEVDDVLAAGADTVHFDVMDNHYVPNLTIGPMVCKALRNHgVEAPIDVHLMVSPVDRIIGEFADAGASYITFHPEATGHIDRSLQLIRAAGCKSGLVFNPATSLDCLKYVMDKVDIVLLMSVNPGFGGQKFIPATLDKLREARKLIDESGYDISLEIDGGVGPANIAEVAEAGADMFVAGSAIFNTPDYKETIDKMR 255
                 9****************************************************999********************************************************************************************************************************************************997 PP

>> TIGR03128  RuMP_HxlA: 3-hexulose-6-phosphate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.3   0.0    0.0036       2.9      68     133 ..      60     131 ..      55     142 .. 0.81
   2 !   20.4   0.0   8.5e-08   6.9e-05     132     204 ..     180     256 ..     168     258 .. 0.83

  Alignments for each domain:
  == domain 1    score: 5.3 bits;  conditional E-value: 0.0036
   TIGR03128  68 EaeqafaaGadivt..vlg..vaddatikeavkaA.kkegkevlvDl.invkDkakrakelkelGvdiiavH 133
                 E+  + aaGad v   v+     ++ ti  +v +A +++g e  +D+ + v+ + + + e + +G+++i++H
  MMETSP1137-20121227|8117_1  60 EVDDVLAAGADTVHfdVMDnhYVPNLTIGPMVCKAlRNHGVEAPIDVhLMVSPVDRIIGEFADAGASYITFH 131
                 8889999999998533665224578999998877747889999999767899999999*************9 PP

  == domain 2    score: 20.4 bits;  conditional E-value: 8.5e-08
   TIGR03128 132 vHtGlDeqakgkkpledLetllkvvkevkv....avAGGikldtikeviklgadvvivGsaitkAedpaeaakkikk 204
                 v  G   q+    +l++L++  k++ e++      + GG+   +i ev+++gad+ + Gsai +  d +e+  k+++
  MMETSP1137-20121227|8117_1 180 VNPGFGGQKFIPATLDKLREARKLIDESGYdislEIDGGVGPANIAEVAEAGADMFVAGSAIFNTPDYKETIDKMRA 256
                 5556666777777888888888888877655555899*******************************999999876 PP

>> TIGR01334  modD: modD protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.0   3.4e-07   0.00028     216     270 ..     188     245 ..     174     251 .. 0.78

  Alignments for each domain:
  == domain 1    score: 18.3 bits;  conditional E-value: 3.4e-07
   TIGR01334 216 kftpqqvkelaellklldk...nitlavaGGinkenvaeylelGidlfitsaPyyaaP 270
                 kf p  + +l e  kl+d+    i+l + GG+ + n+ae +e+G+d+f++ +  +  P
  MMETSP1137-20121227|8117_1 188 KFIPATLDKLREARKLIDEsgyDISLEIDGGVGPANIAEVAEAGADMFVAGSAIFNTP 245
                 665555555555555555422289*************************987777666 PP

>> TIGR00693  thiE: thiamine-phosphate pyrophosphorylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0      0.26   2.2e+02       3      32 ..      43      73 ..      41      93 .. 0.72
   2 !   14.2   0.0   5.3e-06    0.0043     154     195 ..     211     252 ..     168     254 .. 0.82

  Alignments for each domain:
  == domain 1    score: -1.2 bits;  conditional E-value: 0.26
   TIGR00693  3 Ylvtdsellke.kelleiveaalkgGvtlvQ 32
                Y++++s l    ++l + v+++l++G+++v 
  MMETSP1137-20121227|8117_1 43 YIIAPSILSAXfANLGKEVDDVLAAGADTVH 73
                6666665555566777777777777777665 PP

  == domain 2    score: 14.2 bits;  conditional E-value: 5.3e-06
   TIGR00693 154 ipvvaIGGitlenveevlkagvdgvavvsaimaaadvaaaak 195
                 i     GG+ + n++ev++ag+d  +  sai++++d+++++ 
  MMETSP1137-20121227|8117_1 211 ISLEIDGGVGPANIAEVAEAGADMFVAGSAIFNTPDYKETID 252
                 444455*******************************99876 PP

>> TIGR00078  nadC: nicotinate-nucleotide diphosphorylase (carboxylating)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.0     0.025        20     190     213 ..      59      82 ..      49     102 .. 0.89
   2 !   10.7   0.0   5.9e-05     0.048     211     255 ..     195     239 ..     133     247 .. 0.91

  Alignments for each domain:
  == domain 1    score: 2.1 bits;  conditional E-value: 0.025
   TIGR00078 190 eeaeealeagadiilLDNmkpeei 213
                 +e++ +l+agad + +D m+++ +
  MMETSP1137-20121227|8117_1  59 KEVDDVLAAGADTVHFDVMDNHYV 82 
                 58999**************99876 PP

  == domain 2    score: 10.7 bits;  conditional E-value: 5.9e-05
   TIGR00078 211 eeikeavellkekapsvlvEaSGgitldnveeyaetgvdvisvga 255
                 ++++ea +l++e    + +E  Gg+ + n++e+ae g d+   g+
  MMETSP1137-20121227|8117_1 195 DKLREARKLIDESGYDISLEIDGGVGPANIAEVAEAGADMFVAGS 239
                 678999999999999************************987776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (270 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       124  (0.0302292); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.26u 0.18s 00:00:00.44 Elapsed: 00:00:00.36
# Mc/sec: 989.92
//
Query:       MMETSP1137-20121227|8118_1  [L=757]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
          0 1048.4   0.9          0 1048.2   0.6    1.0  1  TIGR00484 EF-G: translation elongation factor G
    1.3e-95  318.9   3.7    1.7e-37  126.7   0.1    3.1  3  TIGR00490 aEF-2: translation elongation factor aEF-2
      5e-70  234.2   2.6    2.3e-35  119.7   0.0    3.8  3  TIGR01394 TypA_BipA: GTP-binding protein TypA/BipA
    2.1e-55  185.9   0.1    4.5e-55  184.9   0.1    1.4  2  TIGR00503 prfC: peptide chain release factor 3
    8.3e-53  177.4   0.0    2.7e-27   93.2   0.0    3.9  3  TIGR01393 lepA: GTP-binding protein LepA
    2.5e-33  113.0   0.0    4.9e-33  112.1   0.0    1.5  1  TIGR00231 small_GTP: small GTP-binding protein domain
    2.2e-17   60.7   0.8    1.3e-14   51.6   0.0    2.6  2  TIGR00485 EF-Tu: translation elongation factor Tu
    9.9e-13   45.1   0.1    3.3e-11   40.1   0.0    2.3  2  TIGR00483 EF-1_alpha: translation elongation factor EF-1, subunit alpha
    6.1e-11   39.6   0.4    2.1e-10   37.8   0.2    1.8  1  TIGR00487 IF-2: translation initiation factor IF-2
    1.2e-08   32.0   0.2    4.6e-08   30.0   0.0    1.9  2  TIGR00475 selB: selenocysteine-specific translation elongation factor
    4.4e-06   23.8   0.1     0.0002   18.4   0.0    2.2  2  TIGR02034 CysN: sulfate adenylyltransferase, large subunit
    0.00076   15.8   0.0     0.0017   14.7   0.0    1.5  1  TIGR00491 aIF-2: translation initiation factor aIF-2
      0.004   14.3   0.1      0.019   12.0   0.1    2.0  2  TIGR03680 eif2g_arch: translation initiation factor 2, gamma subunit
     0.0096   12.8   0.0      0.035   10.9   0.0    1.8  2  TIGR03594 GTPase_EngA: ribosome-associated GTPase EngA


Domain annotation for each model (and alignments):
>> TIGR00484  EF-G: translation elongation factor G
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ! 1048.2   0.6         0         0       3     690 ..      60     750 ..      58     751 .. 0.99

  Alignments for each domain:
  == domain 1    score: 1048.2 bits;  conditional E-value: 0
   TIGR00484   3 rtvdleklrniGisahidaGktttterilfytgkihkigevhdGaatmdwmeqekerGititsaattvewkdfrinlidtPGhvdftveverslrvldGavavldavaGvepqsetvwrqakkyevPrivfvnkmdkiGanflkvveqlksrldvnavplqlpiGaedkfeGvidlvkkkayffe.edkgekaeekeiPedlkeeakelreklveavaeldeelmekyleGeeltieeikkairkgvlalelvpvlvGsafknkGvqllldavvdylPsPvdvkaikaidedtekeielkasddepfvalafkvatdpfvgkltfvrvysGvlksGsevlnsrkekkervgrlvkmhankreeieevraGdiaaliGlkdtttGdtlcdekaevilesmefpePvislavePktkadqekmgialgklaeedPtfkvftdeesgqtiiaGmGelhldiivdrlkrefkvevnvGkPqvayretirkkaevegkyakqsGGrGqyGhvvielePlee..gkgyefvneikGGviPreyipavdkGleealesGvlaGyPvvdikvtlfdGsyhdvdsselafklaaslalkeavkkakPvllePimkvevevPeeylGdvlGdlsrrrgliegseeresvkvvkaevPlsemfGyatdlrsatqGraeysmeflkyaevPksvaeeiiekkk 690
                 r+vdl+ +rn+Gi+ahidaGktttterilfytgk++kigevh+G atmdwmeqe+erGititsaatt+ wkd+rin+idtPGhvdft+everslrvldGavav+d vaGvepqsetvwrqa+ky+vPr+ f+nkmd++Ga+f+  v+++ + l++ +  lqlpiG+e +f+Gv+dlv +k ++++ e  g+++e  +iP+dl ++a e++eklve ++e+dee +  yleGe  + e++kk irkg++a ++vpvl G+afknkGvq llda+vdy+P+P+dv++ik++++d+e+++ +k+sd+epf+ala k++tdpfvg ltf r+ysG+l++G  vlns+k+k+er+gr+++m an+r +++   aGdi+al+G kdtttG+tlcd+ ++vile+mefpePvi+++veP +k dqekm++al kla+edP+f+   de+sgqt+i+GmGelhl+ii dr+krefkve n+G Pqvayre+i + +++e++++kqsGG Gq+ ++v+++ePle+  + g+ f +eikGG +P+eyip v kGle  +++G laG+Pv+  k+tl dG yhdvdss +af++a+  a +++ ++a   l+eP+mkvev+vPee +Gdv+Gd+++rrg++    er+++kvv+a+vPls+mf y ++lrs t+Gra+ysme+++y+ vP +v +e++ k k
  MMETSP1137-20121227|8118_1  60 RKVDLAMYRNVGIMAHIDAGKTTTTERILFYTGKTYKIGEVHEGGATMDWMEQEQERGITITSAATTCYWKDHRINIIDTPGHVDFTLEVERSLRVLDGAVAVFDGVAGVEPQSETVWRQADKYGVPRMCFLNKMDRTGADFYFCVKTIIELLGATPAVLQLPIGTEADFKGVVDLVAMKGIVWDgEGLGADFEIIDIPSDLADKAAEYHEKLVELAVEQDEEALMAYLEGEMPSPETLKKLIRKGTIAGDFVPVLTGTAFKNKGVQPLLDAIVDYMPAPTDVADIKGVSQDGETPMVRKSSDEEPFAALAXKIMTDPFVGTLTFARIYSGILEKGTSVLNSVKNKRERIGRMLEMNANDRTDLDSAVAGDIIALVGCKDTTTGETLCDPANPVILEKMEFPEPVIKVSVEPNSKGDQEKMTMALVKLAQEDPSFRFSRDEDSGQTVIEGMGELHLEIICDRMKREFKVECNIGPPQVAYREAISRPCTIEHTHKKQSGGSGQFAKIVVKFEPLEDesASGFVFEQEIKGGTVPKEYIPGVAKGLESVMSNGILAGFPVIGCKATLLDGAYHDVDSSVMAFEIAGRAAARKGLREAGAKLMEPVMKVEVTVPEESMGDVIGDINSRRGMVAELAERGNMKVVRARVPLSNMFQYVSQLRSITKGRASYSMELDNYEVVPPNVEKELLTKYK 750
                 89***************************************************************************************************************************************************************************************8889*************************************************************************************************************************************************************************************************************************************************************************************************************************************998889*********************************************************************************************************************************************************************998866 PP

>> TIGR00490  aEF-2: translation elongation factor aEF-2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  108.2   0.0   2.3e-34   6.8e-32      18     151 ..      66     197 ..      57     210 .. 0.90
   2 !  126.7   0.1   5.9e-40   1.7e-37     245     498 ..     327     577 ..     318     599 .. 0.82
   3 !   83.9   0.1   5.1e-27   1.5e-24     560     710 ..     600     748 ..     579     753 .. 0.91

  Alignments for each domain:
  == domain 1    score: 108.2 bits;  conditional E-value: 2.3e-34
   TIGR00490  18 firnigivahidhgkttlsdnllagagmise..elageqlfldfdeqeqergitidaanvsmvheyegneylinlidtpghvdfggdvtramravdgaivvvcavegvmpqtetvlrqalkenvkpvlfinkvdrl 151
                 + rn+gi+ahid gktt ++ +l  +g   +  e+      +d+ eqeqergiti++a  +       +++ in+idtpghvdf  +v r++r +dga+ v + v gv pq+etv rqa k  v  + f+nk+dr 
  MMETSP1137-20121227|8118_1  66 MYRNVGIMAHIDAGKTTTTERILFYTGKTYKigEVHEGGATMDWMEQEQERGITITSAATTCY----WKDHRINIIDTPGHVDFTLEVERSLRVLDGAVAVFDGVAGVEPQSETVWRQADKYGVPRMCFLNKMDRT 197
                 67********************9877765443388888899**************99987643....57999**************************************************************96 PP

  == domain 2    score: 126.7 bits;  conditional E-value: 5.9e-40
   TIGR00490 245 vvldmvikhlpspaeaqkyriaviwkgdlnseagkamlncdpegplavvitkivvdkhagevavgrlysgaikkgsevylvdskakariqqvgvymgpervevdeipagnivavvglkeavageticstdkkikafeaikhisepvvtvaieakntkdlpklievlrkvakedptvkveineetgehlisgmgelhleiivkkirekagvevetsepivvyretvtgtspvve..gk...spnkhnrlyivvepleesv 498
                  +ld ++ ++p+p++        i kg  +  +   + ++  e p+a++  ki+ d+  g ++ +r+ysg ++kg+ v    +++++ri ++  +   +r + d+  ag+i+a+vg k++++get+c++++ +  +e ++ + epv+ v++e     d  k+   l k+a+edp+ +   +e++g+ +i gmgelhleii+++++++++ve ++++p v yre+++  +++     k      +  ++ ++ eple++ 
  MMETSP1137-20121227|8118_1 327 PLLDAIVDYMPAPTDVAD-----I-KGVSQDGETPMVRKSSDEEPFAALAXKIMTDPFVGTLTFARIYSGILEKGTSVLNSVKNKRERIGRMLEMNANDRTDLDSAVAGDIIALVGCKDTTTGETLCDPANPV-ILEKME-FPEPVIKVSVEPNSKGDQEKMTMALVKLAQEDPSFRFSRDEDSGQTVIEGMGELHLEIICDRMKREFKVECNIGPPQVAYREAISRPCTIEHthKKqsgGSGQFAKIVVKFEPLEDES 577
                 567777777777766433.....2.3332222333344677899**********************************99999999****99999999*******************************9887.477776.79*********************************************************************************98655433211221113456778888888988754 PP

  == domain 3    score: 83.9 bits;  conditional E-value: 5.1e-27
   TIGR00490 560 ilegfkeamrngpvakekvmgvkvklvdaklhedavhrgpaqvipavrkgifaallqaepvlleplqkvfinvpqdlmgaatreiqnrrgqilemkqegdmvtikakvpvaemfgfagairgategralwstefagfekvprelqeelvke 710
                 + +g+++ m ng +a  +v+g k  l+d   h+  v         a r + ++ l +a   l+ep+ kv ++vp++ mg ++ +i++rrg + e+ + g+m +++a+vp+++mf +  ++r+ t+gra +s+e   +e vp ++ +el+ +
  MMETSP1137-20121227|8118_1 600 VAKGLESVMSNGILAGFPVIGCKATLLDGAYHD--VDSSVMAFEIAGRAAARKGLREAGAKLMEPVMKVEVTVPEESMGDVIGDINSRRGMVAELAERGNMKVVRARVPLSNMFQYVSQLRSITKGRASYSMELDNYEVVPPNVEKELLTK 748
                 679***************************997..55555556668899999999999***************************************************************************************999865 PP

>> TIGR01394  TypA_BipA: GTP-binding protein TypA/BipA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  119.7   0.0   7.7e-38   2.3e-35       1     146 [.      67     214 ..      67     240 .. 0.93
   2 !   83.8   0.1   6.1e-27   1.8e-24     194     388 ..     359     542 ..     313     552 .. 0.84
   3 !   27.5   0.1   6.5e-10   1.9e-07     386     475 ..     653     741 ..     647     752 .. 0.90

  Alignments for each domain:
  == domain 1    score: 119.7 bits;  conditional E-value: 7.7e-38
   TIGR01394   1 irniaiiahvDhGkttlvDklLkqsgvlrekeevee..rvmDsndlererGitilakntavkykdtkinivDtPGhaDfGGevervlsmvdgvlllvDaseGplpqtrfvlkkalelglkpivvinkiDrpdarpeevvdevfdLfve 146
                 +rn+ i+ah+D Gktt  +++L  +g   +  ev+e    mD  + e+erGiti + +t+  +kd +ini+DtPGh Df  ever l ++dg++ + D + G+ pq   v ++a ++g   +  +nk+Dr+ a+    v+++ +L+ +
  MMETSP1137-20121227|8118_1  67 YRNVGIMAHIDAGKTTTTERILFYTGKTYKIGEVHEggATMDWMEQEQERGITITSAATTCYWKDHRINIIDTPGHVDFTLEVERSLRVLDGAVAVFDGVAGVEPQSETVWRQADKYGVPRMCFLNKMDRTGADFYFCVKTIIELLGA 214
                 59********************999988888888874469*****************************************************************************************************9999754 PP

  == domain 2    score: 83.8 bits;  conditional E-value: 6.1e-27
   TIGR01394 194 kadkdeplqllvttldydeylGriaigrverGkvkkgqqvallkkdgkiekariskllafeglerveideaeaGdivavaGledieigetiadaeeaealpllkvdePtlsmtfsvndsPlaGkegkkvtsrkirdrLereletnvalrveeteeadkfevsGrGeLhlsiLietmrre.GfelsvskPkvivkei 388
                 k +++ep+ +l  ++ +d ++G ++ +r+++G + kg++v    k    ++ ri ++l +++ +r+++d+a aGdi+a++G +d++ get++d+ ++  l+ ++  eP ++++++ n     G ++k +t       L + ++++ ++r +  e++ +  ++G GeLhl i+ + m+re   e +++ P+v ++e 
  MMETSP1137-20121227|8118_1 359 KSSDEEPFAALAXKIMTDPFVGTLTFARIYSGILEKGTSVLNSVK---NKRERIGRMLEMNANDRTDLDSAVAGDIIALVGCKDTTTGETLCDPANPVILEKMEFPEPVIKVSVEPNSK---GDQEK-MTM-----ALVKLAQEDPSFRFSRDEDSGQTVIEGMGELHLEIICDRMKREfKVECNIGPPQVAYREA 542
                 456789*******************************99976554...46789*************************************************************99973...55443.443.....4666778899*********************************55899*********985 PP

  == domain 3    score: 27.5 bits;  conditional E-value: 6.5e-10
   TIGR01394 386 keidgkklePieeltidvpeefvgavieklgkrkgelkdmeskgsGrvrlefkiPsrgliGfrtefltatrGegilnrvfdeyeplkgei 475
                 +e   k +eP+ ++ + vpee++g vi  + +r+g + +++++g+    ++  +P   ++ + +++ + t+G +  +   d+ye +  ++
  MMETSP1137-20121227|8118_1 653 REAGAKLMEPVMKVEVTVPEESMGDVIGDINSRRGMVAELAERGN-MKVVRARVPLSNMFQYVSQLRSITKGRASYSMELDNYEVVPPNV 741
                 56667899************************************9.566899**************************999999765555 PP

>> TIGR00503  prfC: peptide chain release factor 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  184.9   0.1   1.5e-57   4.5e-55       9     467 ..      65     538 ..      56     556 .. 0.83
   2 ?   -3.3   0.0       1.6   4.7e+02     171     205 ..     619     655 ..     612     670 .. 0.65

  Alignments for each domain:
  == domain 1    score: 184.9 bits;  conditional E-value: 1.5e-57
   TIGR00503   9 dkrrtfaiishpdaGkttltekvllyGnaiqeaGavkargsqrsaksdwmemekqrGisittsvlqfdyrdklvnlldtpGhedfsedtyrtltavdsalmvidaakGveertrkllevtrlrdlpiltflnkldrdirdplelldevenelkintaaitypiGtGklfkGvyhllkdeiylye.sGkgstikavrvvkalddpeld...aavGedlaqelrdelelvee..asaefdkeav....laGeltpvffGtalgnfGvdllldallqyaakpe........ardsdtrtveaa..eekfsGfvfklqanmdpkhrdrvaflrvvsGkyekdmklkhvrtgkdvvlsdalkllagdresveeayaGdiiGlhnhGtiqiGdtvtqGek.lkftgipnfapelfrrlrlkdplkqkqllkGlvelseeG.avqvlrsldendlivaavGvlqfdvvvarlkeeynveavyesvnva 467
                 +  r+  i++h daGktt te++l+y +   + G v+       a+ dwme e++rGi+it++     ++d  +n++dtpGh df+ +  r+l   d a+ v d   Gve ++  +   +    +p + flnk+dr   d    +  + + l+ + a ++ piGt   fkGv +l+  +  +++  G g+  + +++   l d + +    +v   + q+ +  +  +e+   s e  k+++    +aG++ pv+ Gta++n Gv+ llda+++y ++p+        ++d +t  v  +  ee f+ +  k+    dp     ++f r+ sG  ek+  + +    k  ++ + l++ a+dr++ + a aGdii l      + G+t+ +  + ++   +    p +   +  +    q ++   lv+l +e  + +  r  d  + ++  +G l ++++  r+k e++ve+ + + +va
  MMETSP1137-20121227|8118_1  65 AMYRNVGIMAHIDAGKTTTTERILFYTGKTYKIGEVHEG----GATMDWMEQEQERGITITSAATTCYWKDHRINIIDTPGHVDFTLEVERSLRVLDGAVAVFDGVAGVEPQSETVWRQADKYGVPRMCFLNKMDRTGADFYFCVKTIIELLGATPAVLQLPIGTEADFKGVVDLVAMKGIVWDgEGLGADFEIIDIPSDLADKAAEyheKLVELAVEQDEEALMAYLEGemPSPETLKKLIrkgtIAGDFVPVLTGTAFKNKGVQPLLDAIVDYMPAPTdvadikgvSQDGETPMVRKSsdEEPFAALAXKIM--TDP-FVGTLTFARIYSGILEKGTSVLNSVKNKRERIGRMLEMNANDRTDLDSAVAGDIIALVGCKDTTTGETLCDPANpVILEKMEFPEPVIKVSVEPNSKGDQEKMTMALVKLAQEDpSFRFSRDEDSGQTVIEGMGELHLEIICDRMKREFKVECNIGPPQVA 538
                 4679*******************************9865....5899**********************************************************************************************************************************999999989***********9999998765111334333333333333444441134454455441111678889*************************9963333333367888888876612456888888885..466.6789*****************99999*********************************9999*****9876551555555544555656666666677899999****976661556666666669*************************988776665 PP

  == domain 2    score: -3.3 bits;  conditional E-value: 1.6
   TIGR00503 171 iGtG.klfkGvyhllkdeiylye.sGkgstikavrvv 205
                 iG+   l+ G yh +   +  +e +G+ +++k  r  
  MMETSP1137-20121227|8118_1 619 IGCKaTLLDGAYHDVDSSVMAFEiAGRAAARKGLREA 655
                 5664146778888888888888877777777766654 PP

>> TIGR01393  lepA: GTP-binding protein LepA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   93.2   0.0   9.1e-30   2.7e-27       3     153 ..      67     215 ..      65     235 .. 0.90
   2 !   50.0   0.0   1.1e-16   3.4e-14     183     373 ..     359     541 ..     275     557 .. 0.81
   3 !   28.0   0.0   5.1e-10   1.5e-07     396     476 ..     657     735 ..     645     740 .. 0.90

  Alignments for each domain:
  == domain 1    score: 93.2 bits;  conditional E-value: 9.1e-30
   TIGR01393   3 irnfsiiahidhGkstladrllektk...avserelkeqlldsldlererGitikaqavrlkykakdgeeyvlnlidtPGhvdfsyevsrslaaceGalllvdaaqGveaqtlanvylalekdleiiPvinkidlPsadvervkkeieeviGld 153
                  rn+ i+ahid Gk+t ++r+l +t+    + e +    ++d ++ e+erGiti + a +  +k     ++ +n+idtPGhvdf+ ev rsl   +Ga+ + d + Gve q+ +    a +  +  +  +nk+d   ad     k i e++G  
  MMETSP1137-20121227|8118_1  67 YRNVGIMAHIDAGKTTTTERILFYTGktyKIGEVHEGGATMDWMEQEQERGITITSAATTCYWK-----DHRINIIDTPGHVDFTLEVERSLRVLDGAVAVFDGVAGVEPQSETVWRQADKYGVPRMCFLNKMDRTGADFYFCVKTIIELLGAT 215
                 69********************87752115677777789*******************999996.....468****************************************988888888899999***********************9976 PP

  == domain 2    score: 50.0 bits;  conditional E-value: 1.1e-16
   TIGR01393 183 kgdkeaplkalifdsvydayrGvvvyvrvveGkikkgdkikllstgkeyeveevgvltpklvkeeelkaGevGyliagikdvkdvkvGdtitsvkkpakealpGfkkvkpvvfaglyPidsedyeelrdaleklklndasltyekesskalGfGfrcGflGllhleviqerlerefdldliataPsvvykv 373
                 k+++e+p  al    + d++ G +++ r+++G ++kg  +    ++k+ ++ ++  l++++++++ l +   G +ia +   kd+  G+t+ + ++p+   l+  +  +pv+  ++ P ++ d e++  al kl+ +d s+ + ++  +  G     G +G lhle+i +r++ref+++  +  P+v y+ 
  MMETSP1137-20121227|8118_1 359 KSSDEEPFAALAXKIMTDPFVGTLTFARIYSGILEKGTSVLNSVKNKRERIGRM--LEMNANDRTDLDSAVAGDIIALV-GCKDTTTGETLCDPANPVI--LEKMEFPEPVIKVSVEPNSKGDQEKMTMALVKLAQEDPSFRFSRDEDS--GQTVIEG-MGELHLEIICDRMKREFKVECNIGPPQVAYRE 541
                 345678999****************************99877666666555554..45555677788888888888755.799**********999986..555666789*********************************998765..4444444.7*****************************85 PP

  == domain 3    score: 28.0 bits;  conditional E-value: 5.1e-10
   TIGR01393 396 eeveePyvkatiivpeeylgailelcqekrgvlkkleyldkervelvyelPlaeivldffdklksiskGyasldyelieyr 476
                 +++ eP++k+++ vpee +g ++  ++++rg++ +l   ++ +  ++  +Pl++ ++++  +l+si+kG as+  el +y+
  MMETSP1137-20121227|8118_1 657 AKLMEPVMKVEVTVPEESMGDVIGDINSRRGMVAELAERGNMK-VVRARVPLSN-MFQYVSQLRSITKGRASYSMELDNYE 735
                 6789********************************9999655.5899*****9.589****************9999886 PP

>> TIGR00231  small_GTP: small GTP-binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  112.1   0.0   1.7e-35   4.9e-33       3     162 ..      67     236 ..      65     238 .. 0.95

  Alignments for each domain:
  == domain 1    score: 112.1 bits;  conditional E-value: 1.7e-35
   TIGR00231   3 eikivivGhvdvGKstLlnsllknkisiteskp...gvtrdyvteqieedGkt............ykvnllDTaGqedfdairrlyvreverslevvdivilvldveeglekqtkeiiheakkkgvpiilvvnKiDlkd.dlktkvkslfaklnaep.iielsaetgknidklfklv 162
                 +++++i++h+d+GK+t+++++l++++   ++++   g   ++++eq++e+G+t             ++n++DT+G++df       + eversl+v+d++++v d   g+e+q ++++++a+k+gvp++ ++nK+D  + d+  +vk++++ l+a p + +l++ t++ + ++++lv
  MMETSP1137-20121227|8118_1  67 YRNVGIMAHIDAGKTTTTERILFYTGKTYKIGEvheGGATMDWMEQEQERGITitsaattcywkdHRINIIDTPGHVDF-------TLEVERSLRVLDGAVAVFDGVAGVEPQSETVWRQADKYGVPRMCFLNKMDRTGaDFYFCVKTIIELLGATPaVLQLPIGTEADFKGVVDLV 236
                 579*******************999877666666668888999999*********************************.......***********************************************************************99************999987 PP

>> TIGR00485  EF-Tu: translation elongation factor Tu
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.6   0.0   4.3e-17   1.3e-14      13     141 ..      68     197 ..      61     213 .. 0.88
   2 !    6.7   0.0    0.0019      0.56     154     297 ..     298     450 ..     276     468 .. 0.72

  Alignments for each domain:
  == domain 1    score: 51.6 bits;  conditional E-value: 4.3e-17
   TIGR00485  13 vnvgtighvdhgkttltaaittvlakegk.aaakk.ydeidkapeekargitintahveyetekrhyahvdcpghadyvknmitgaaqmdgailvvsaadgpmpqtrehillarqvgvpklvvflnkvdlv 141
                  nvg + h+d gktt t  i     k++k +++++    +d   +e++rgiti++a      ++     +d pgh d+  ++      +dga+ v  +  g+ pq+      a + gvp++ +flnk+d  
  MMETSP1137-20121227|8118_1  68 RNVGIMAHIDAGKTTTTERILFYTGKTYKiGEVHEgGATMDWMEQEQERGITITSAATTCYWKDHRINIIDTPGHVDFTLEVERSLRVLDGAVAVFDGVAGVEPQSETVWRQADKYGVPRM-CFLNKMDRT 197
                 59******************99999988755554415789*************9987766666666789**************************************999*********97.8*****975 PP

  == domain 2    score: 6.7 bits;  conditional E-value: 0.0019
   TIGR00485 154 vrellseydfpgddvpivrgsalkalegdaeweekilelmea.........vdeyiptp..erev.dkpfllaiedvfsitgrgtvvtgrvergevkvgeeveivglketkkttvtgvemf...kklldeakagdnvgvllrgvkkeeiergqvlakpg 297
                 +++l+ +    gd vp+++g+a+k  +g +   ++i++ m a         v +  +tp  +++  ++pf      +++    gt++  r+  g++  g  v +  +k++++ +   +em    +  ld+a agd + ++  g   ++   g  l+ p+
  MMETSP1137-20121227|8118_1 298 LKKLIRKGTIAGDFVPVLTGTAFKN-KGVQPLLDAIVDYMPAptdvadikgVSQDGETPmvRKSSdEEPFAALAXKIMTDPFVGTLTFARIYSGILEKGTSV-LNSVKNKRERIGRMLEMNandRTDLDSAVAGDIIALV--G--CKDTTTGETLCDPA 450
                 6788899999999********9997.45555566666665431111111113222333421333326789988899999999****************9998.7799999999999999974446789******988753..3..34556666666665 PP

>> TIGR00483  EF-1_alpha: translation elongation factor EF-1, subunit alpha
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.1   0.0   1.1e-13   3.3e-11       9     154 ..      69     197 ..      64     213 .. 0.88
   2 ?    2.1   0.0     0.038        11     241     315 ..     379     453 ..     365     468 .. 0.77

  Alignments for each domain:
  == domain 1    score: 40.1 bits;  conditional E-value: 1.1e-13
   TIGR00483   9 nvafighvdsgkstlvgrllyeagaiderlleklkkeaeekgkasfefayvldklkeerergvtidvahkkfetdkyevtivdapghrdfiknmitgasqadaavlvvavddgelevqpqtrehvllartlgikqlivainkmdsv 154
                 nv ++ h+d+gk+t++ r+l+ +g+  +  +     e +e g         +d +++e+erg+ti  a +    + +++ i+d+pgh df  ++       d av v ++  g   v+pq+      a   g+ ++   +nkmd+ 
  MMETSP1137-20121227|8118_1  69 NVGIMAHIDAGKTTTTERILFYTGKTYK--IG----EVHEGG-------ATMDWMEQEQERGITITSAATTCYWKDHRINIIDTPGHVDFTLEVERSLRVLDGAVAVFDGVAG---VEPQSETVWRQADKYGVPRMC-FLNKMDRT 197
                 999*********************8643..44....444443.......258999******************************************************9999...99**999999999****9986.58***986 PP

  == domain 2    score: 2.1 bits;  conditional E-value: 0.038
   TIGR00483 241 vgtvpvgrvetgvlkkgekvvfepagvsgev.ksiemhhe...qieqaepgdnigfnvrgvskkdirrgdvagdadnpp 315
                 vgt+   r+ +g+l kg+ v+         + + +em  +    ++ a+ gd i +    v+ kd   g+   d+ np 
  MMETSP1137-20121227|8118_1 379 VGTLTFARIYSGILEKGTSVLNSVKNKRERIgRMLEMNANdrtDLDSAVAGDIIAL----VGCKDTTTGETLCDPANPV 453
                 9******************9987776666553567887542225788888888765....7888888888888888875 PP

>> TIGR00487  IF-2: translation initiation factor IF-2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.8   0.2     7e-13   2.1e-10      90     203 ..      70     200 ..      62     216 .. 0.78

  Alignments for each domain:
  == domain 1    score: 37.8 bits;  conditional E-value: 7e-13
   TIGR00487  90 vtimGhvDhGktsLLdsi.....rktkvaegeaGGit.......qh......iGayqvekedkkkitflDtPGheaftsmrarGakvtDivvlvvaadDGvkpqtieaiehakaanvPiivainkiDkpean 203
                 v im h+D Gkt+  + i     +  k+ e   GG t       q+        a +   +d+  i  +DtPGh  ft    r  +v D +v v     Gv+pq +     a + +vP + ++nk+D+  a+
  MMETSP1137-20121227|8118_1  70 VGIMAHIDAGKTTTTERIlfytgKTYKIGEVHEGGATmdwmeqeQErgititSAATTCYWKDH-RINIIDTPGHVDFTLEVERSLRVLDGAVAVFDGVAGVEPQSETVWRQADKYGVPRMCFLNKMDRTGAD 200
                 789999999999977766444446677877777776633333222211110044445554554.8**************************************************************99887 PP

>> TIGR00475  selB: selenocysteine-specific translation elongation factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.0   0.0   1.6e-10   4.6e-08       3     117 ..      70     198 ..      68     213 .. 0.86
   2 ?   -1.0   0.0       0.4   1.2e+02     191     241 ..     380     434 ..     378     439 .. 0.77

  Alignments for each domain:
  == domain 1    score: 30.0 bits;  conditional E-value: 1.6e-10
   TIGR00475   3 iataGHvDHGKttLlkal...tgid............adrlPeEkKRGltiDlGyaylpledkvlgliDvPGHekflknalagvggidaalLvvdadeGvkaqtkEHLavlkllgikelivvltKaDrvd 117
                 ++++ H+D GKtt    +   tg               d + +E+ RG+ti    +    +d+++++iD PGH  f  ++  ++  +d+a+ v d   Gv +q +   + +++ g++  +  l+K+Dr+ 
  MMETSP1137-20121227|8118_1  70 VGIMAHIDAGKTTTTERIlfyTGKTykigevheggatMDWMEQEQERGITITSAATTCYWKDHRINIIDTPGHVDFTLEVERSLRVLDGAVAVFDGVAGVEPQSETVWRQADKYGVP-RMCFLNKMDRTG 198
                 778899999999987765444554456666778887455677889********9999999*********************************************************.8899******86 PP

  == domain 2    score: -1.0 bits;  conditional E-value: 0.4
   TIGR00475 191 GtvvtGtafsGevkvgDelvlepinkkvrvkal....qaqnqsvekavAGqRial 241
                 Gt     ++sG  + g ++  +  nk+ r+  +     + +++ + avAG+ ial
  MMETSP1137-20121227|8118_1 380 GTLTFARIYSGILEKGTSVLNSVKNKRERIGRMlemnANDRTDLDSAVAGDIIAL 434
                 7777778999999999999999889999997662222234578899*****9998 PP

>> TIGR02034  CysN: sulfate adenylyltransferase, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.0   6.7e-07    0.0002      55     147 ..     107     198 ..      79     207 .. 0.85
   2 ?    3.2   0.0     0.028       8.2     239     284 ..     387     436 ..     375     483 .. 0.81

  Alignments for each domain:
  == domain 1    score: 18.4 bits;  conditional E-value: 6.7e-07
   TIGR02034  55 vdGlqaereqgitidvayr.yfstdkrkfivadtPGheqytrnmatgastadlavllvdarkGvleqtrrhsiiasllGikhvvlavnkidlvd 147
                 +d ++ e+e+giti  a    +  d+r   + dtPGh+ +t ++  +    d av + d   Gv  q       a   G+ ++   +nk+d ++
  MMETSP1137-20121227|8118_1 107 MDWMEQEQERGITITSAATtCYWKDHRIN-IIDTPGHVDFTLEVERSLRVLDGAVAVFDGVAGVEPQSETVWRQADKYGVPRMCF-LNKMDRTG 198
                 8999**********987651455566655.55***********************************998888888888887654.78888665 PP

  == domain 2    score: 3.2 bits;  conditional E-value: 0.028
   TIGR02034 239 iasGsvkvGdevvvlpsgresrvarivtfd....gelekaeaGeavtlvl 284
                 i sG +++G +v    ++++ r+ r+++++     +l++a+aG+ ++lv 
  MMETSP1137-20121227|8118_1 387 IYSGILEKGTSVLNSVKNKRERIGRMLEMNandrTDLDSAVAGDIIALVG 436
                 789**********9999********9998732334799******999874 PP

>> TIGR00491  aIF-2: translation initiation factor aIF-2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0   5.8e-06    0.0017       7     133 ..      70     196 ..      67     200 .. 0.72

  Alignments for each domain:
  == domain 1    score: 14.7 bits;  conditional E-value: 5.8e-06
   TIGR00491   7 vavlGhvdhGkttlldkirktrvakreaGgitqhiGaseiPidvikrlcgdllk.klkidlkiPGllvidtPGheaftslrkrGGaladiailvvdineGfkpqtveavnilrqlktPfvvaankidr 133
                 v ++ h+d Gktt  ++i      +   G++  + Ga+   ++  ++    +         k   + +idtPGh  ft    r   + d a+ v d + G++pq++       ++ +P +   nk+dr
  MMETSP1137-20121227|8118_1  70 VGIMAHIDAGKTTTTERILFYTGKTYKIGEVH-EGGATMDWMEQEQERGITITSaATTCYWKDHRINIIDTPGHVDFTLEVERSLRVLDGAVAVFDGVAGVEPQSETVWRQADKYGVPRMCFLNKMDR 196
                 56778888888888888866655555556553.34555444443333222222202223334445679*************************************99999999999999999999998 PP

>> TIGR03680  eif2g_arch: translation initiation factor 2, gamma subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.0   0.1   6.6e-05     0.019       7     129 ..      69     179 ..      65     198 .. 0.72
   2 ?   -1.8   0.0      0.98   2.9e+02     160     201 ..     298     341 ..     290     347 .. 0.81

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 6.6e-05
   TIGR03680   7 niglvGhvDhGkttlvkaltGvwtdthseelkrgisiklGyadaeikkceeceepeaytteekceecgsetellrkvsfvDaPGhetLmatmlsGaalmdgalLviaaneevPqpqtkehlva 129
                 n+g++ h+D Gktt+++ +     +t++        ++ G a +  ++ e+    + +t ++ +++c        ++ ++D+PGh  +   +     ++dga+ v +    v +pq +     
  MMETSP1137-20121227|8118_1  69 NVGIMAHIDAGKTTTTERILFYTGKTYK-----IGEVHEGGATMDWMEQEQE---RGITITSAATTCYW---KDHRINIIDTPGHVDFTLEVERSLRVLDGAVAVFDGVAGV-EPQSETVWRQ 179
                 89**************998766555554.....2234455565555555544...56666777777773...45689********999999999999********9998888.7776655555 PP

  == domain 2    score: -1.8 bits;  conditional E-value: 0.98
   TIGR03680 160 ikefv.kgtvaen.apiiPvsalkkvnidvllealekeiptper 201
                 +k+++ kgt+a +  p++  +a k+  ++ ll+a+ +++p p  
  MMETSP1137-20121227|8118_1 298 LKKLIrKGTIAGDfVPVLTGTAFKNKGVQPLLDAIVDYMPAPTD 341
                 566654789986637899999*******************9975 PP

>> TIGR03594  GTPase_EngA: ribosome-associated GTPase EngA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.9   0.0   0.00012     0.035      31     124 ..     115     200 ..     112     215 .. 0.74
   2 ?   -2.1   0.0         1   3.1e+02     319     344 ..     309     334 ..     291     347 .. 0.61

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 0.00012
   TIGR03594  31 tpgvTRDrkygeaelkgkefiliDTgGleeeedelekeireqaelaieeadvilfvvdareglteeDeeiaklLrkskkpvilvvNKvdnkkee 124
                 + g+T     +++ +k++++++iDT+G          + + ++e +++  d  + v+d+ +g++++ e++ +   k++ p +  +NK+d++ ++
  MMETSP1137-20121227|8118_1 115 ERGITITSAATTCYWKDHRINIIDTPGHV--------DFTLEVERSLRVLDGAVAVFDGVAGVEPQSETVWRQADKYGVPRMCFLNKMDRTGAD 200
                 56777777778888888888888888873........233445566666677778888888888888888888888888888888888877655 PP

  == domain 2    score: -2.1 bits;  conditional E-value: 1
   TIGR03594 319 lkfapivfiSAltgkgveklleaike 344
                  +f+p+++  A ++kgv+ ll+ai +
  MMETSP1137-20121227|8118_1 309 GDFVPVLTGTAFKNKGVQPLLDAIVD 334
                 45556666666666666666555543 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (757 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       124  (0.0302292); expected 82.0 (0.02)
Passed bias filter:                      107  (0.0260848); expected 82.0 (0.02)
Passed Vit filter:                        25  (0.00609459); expected 4.1 (0.001)
Passed Fwd filter:                        14  (0.00341297); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.83u 0.18s 00:00:01.01 Elapsed: 00:00:00.68
# Mc/sec: 1469.35
//
Query:       MMETSP1137-20121227|8119_1  [L=205]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (205 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        52  (0.0126767); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.15s 00:00:00.32 Elapsed: 00:00:00.30
# Mc/sec: 901.93
//
Query:       MMETSP1137-20121227|8120_1  [L=163]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.9e-28   96.5   0.2    2.3e-28   96.2   0.1    1.1  1  TIGR01068 thioredoxin: thioredoxin
      2e-18   64.4   0.2    2.6e-18   64.1   0.1    1.2  1  TIGR01126 pdi_dom: protein disulfide-isomerase domain
    1.9e-16   58.5   0.1    2.2e-16   58.3   0.1    1.0  1  TIGR01130 ER_PDI_fam: protein disulfide isomerases
    3.9e-08   31.1   0.3    5.9e-08   30.5   0.2    1.2  1  TIGR00411 redox_disulf_1: redox-active disulfide protein 1
    1.8e-05   22.2   0.0    4.3e-05   21.0   0.0    1.5  2  TIGR00385 dsbE: periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily
    0.00064   17.3   0.1    0.00082   17.0   0.1    1.1  1  TIGR02187 GlrX_arch: glutaredoxin-like domain protein
     0.0016   16.7   0.1     0.0026   16.1   0.1    1.4  1  TIGR02196 GlrX_YruB: glutaredoxin-like protein, YruB-family
     0.0062   13.0   0.1     0.0072   12.8   0.1    1.1  1  TIGR00424 APS_reduc: 5'-adenylylsulfate reductase, thioredoxin-independent
  ------ inclusion threshold ------
      0.028   11.9   0.1      0.035   11.6   0.1    1.2  1  TIGR02738 TrbB: type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB


Domain annotation for each model (and alignments):
>> TIGR01068  thioredoxin: thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.2   0.1     5e-31   2.3e-28      11      99 ..      75     161 ..      64     163 .] 0.89

  Alignments for each domain:
  == domain 1    score: 96.2 bits;  conditional E-value: 5e-31
   TIGR01068  11 assdklvlvDfwAeWCgpCkmlaPvleelakeleekvkvvKlnvdeeqeiaakygirsiPtlllfkngkevkrvvGakpkaalkeliek 99 
                  ++dklv+vDf A+WCgpC+ +aPv+++la+e+  +v +vK++vde++++a++ gi+++Pt  l+kn ++v++  Ga + ++l+e+i+k
  MMETSP1137-20121227|8120_1  75 GAGDKLVVVDFTATWCGPCQKIAPVFAKLAEEMP-NVVFVKVDVDENEDVAQECGIQAMPTFQLYKNKEKVHEFSGASE-EKLREAISK 161
                 35799*************************8888.6****************************************987.889999887 PP

>> TIGR01126  pdi_dom: protein disulfide-isomerase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.1   0.1   5.7e-21   2.6e-18       6      97 ..      69     155 ..      64     163 .] 0.83

  Alignments for each domain:
  == domain 1    score: 64.1 bits;  conditional E-value: 5.7e-21
   TIGR01126   6 fdelvl.denkdvlvefyaPWCGhCkklaPeyeklakelkkeeekvkiakvdataekelaskfkvsgfPtlkffkkgkkepvdyeGeReaeel 97 
                 fd +++   +k v+v+f+a WCG C+k+aP++ kla+e+     +v+  kvd ++++++a++ ++++ Pt +++k+++k   +++G+ e+ +l
  MMETSP1137-20121227|8120_1  69 FDAALAgAGDKLVVVDFTATWCGPCQKIAPVFAKLAEEMP----NVVFVKVDVDENEDVAQECGIQAMPTFQLYKNKEK-VHEFSGASEE-KL 155
                 5555541468899***********************9998....599****************************9996.999**98654.33 PP

>> TIGR01130  ER_PDI_fam: protein disulfide isomerases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.3   0.1   4.8e-19   2.2e-16      10      96 ..      68     152 ..      59     162 .. 0.85

  Alignments for each domain:
  == domain 1    score: 58.3 bits;  conditional E-value: 4.8e-19
   TIGR01130  10 nfddlik..enelvLveFYAPWCGHCksLaPeYekAAeelkkkspkvklakvDateekelaqkygvsGyPtLkifrngesssdYnGpRe 96 
                 +fd ++    ++lv+v F A WCG C+++aP ++k A    ++ p+v+ +kvD  e++++aq+ g++  Pt ++++n e++++++G+ e
  MMETSP1137-20121227|8120_1  68 EFDAALAgaGDKLVVVDFTATWCGPCQKIAPVFAKLA----EEMPNVVFVKVDVDENEDVAQECGIQAMPTFQLYKNKEKVHEFSGASE 152
                 5666665214799********************9865....56689****************************************866 PP

>> TIGR00411  redox_disulf_1: redox-active disulfide protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.5   0.2   1.3e-10   5.9e-08       6      80 ..      85     161 ..      81     163 .] 0.84

  Alignments for each domain:
  == domain 1    score: 30.5 bits;  conditional E-value: 1.3e-10
   TIGR00411   6 ftsPtCPyCPkakkvveevakeegdkvevekinvmedlkkaleyGimavPaivi..n.gkv.efvGaPdkeeLveaikk 80 
                 ft+  C  C k   v  + a+e+++ v v k++v+e+ + a e Gi+a+P+  +  n +kv ef G  ++e+L+eai k
  MMETSP1137-20121227|8120_1  85 FTATWCGPCQKIAPVFAKLAEEMPNVVFV-KVDVDENEDVAQECGIQAMPTFQLykNkEKVhEFSG-ASEEKLREAISK 161
                 999*********************98876.8********************987333234414555.58999*****87 PP

>> TIGR00385  dsbE: periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.0   0.0   9.4e-08   4.3e-05      46     104 ..      61     121 ..      48     127 .. 0.71
   2 ?    0.1   0.0      0.25   1.1e+02     121     159 ..     115     152 ..     111     157 .. 0.69

  Alignments for each domain:
  == domain 1    score: 21.0 bits;  conditional E-value: 9.4e-08
   TIGR00385  46 aelkekvqlltaevlkkgklvLlnvwasWCptCraehplLkelakeglriv..gvdykDes 104
                 a+lk+k ++  a +    klv++++ a+WC++C++  p+  +la+e  ++v   vd  +++
  MMETSP1137-20121227|8120_1  61 AQLKNKPEFDAALAGAGDKLVVVDFTATWCGPCQKIAPVFAKLAEEMPNVVfvKVDVDENE 121
                 5666665554444444568999***********************9755541155555555 PP

  == domain 2    score: 0.1 bits;  conditional E-value: 0.25
   TIGR00385 121 vlaDekGklaldlGvygaPetflvdgnGviryrhaGdln 159
                 v  De+  +a + G++++P  f + +n    +  +G ++
  MMETSP1137-20121227|8120_1 115 VDVDENEDVAQECGIQAMPT-FQLYKNKEKVHEFSGASE 152
                 667999999999****9995.544444444556666655 PP

>> TIGR02187  GlrX_arch: glutaredoxin-like domain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.1   1.8e-06   0.00082     139     207 ..      83     154 ..      65     161 .. 0.83

  Alignments for each domain:
  == domain 1    score: 17.0 bits;  conditional E-value: 1.8e-06
   TIGR02187 139 evfvtptCpYCPrAvllAhklAleadkilgevieAlEfqdlaekyqvssvPkivinkdve...efvGaqpee 207
                   f  + C+ C + + +  klA e ++++   ++  E++d+a++ +++++P+  + k++e   ef Ga  e+
  MMETSP1137-20121227|8120_1  83 VDFTATWCGPCQKIAPVFAKLAEEMPNVVFVKVDVDENEDVAQECGIQAMPTFQLYKNKEkvhEFSGASEEK 154
                 44556679999999999999999999*************************999987777567899998665 PP

>> TIGR02196  GlrX_YruB: glutaredoxin-like protein, YruB-family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.1   5.7e-06    0.0026       5      49 ..      85     130 ..      81     160 .. 0.70

  Alignments for each domain:
  == domain 1    score: 16.1 bits;  conditional E-value: 5.7e-06
   TIGR02196   5 YttpwCppCkkakeyLksk.....giafeeidvekdsaaaeellkklgqr 49 
                 +t +wC+pC+k+   + +      ++ f ++dv++++  a+e     g +
  MMETSP1137-20121227|8120_1  85 FTATWCGPCQKIAPVFAKLaeempNVVFVKVDVDENEDVAQE----CGIQ 130
                 799********8877765433344999999999988766655....4555 PP

>> TIGR00424  APS_reduc: 5'-adenylylsulfate reductase, thioredoxin-independent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.8   0.1   1.6e-05    0.0072     376     449 ..      82     152 ..      68     163 .] 0.76

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 1.6e-05
   TIGR00424 376 lvvlyapwcpfcqameasyvelaeklagsgvkvakfradgdqkefakqelqlgsfptillfp.krssraikypse 449
                 +v + a wc  cq +   + +lae +     +v   + d d++e   qe  ++++pt  l+  k+  +     se
  MMETSP1137-20121227|8120_1  82 VVDFTATWCGPCQKIAPVFAKLAEEM----PNVVFVKVDVDENEDVAQECGIQAMPTFQLYKnKEKVHEFSGASE 152
                 3345799********99988777766....57888999*******************998851334444444555 PP

>> TIGR02738  TrbB: type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.1   7.7e-05     0.035      34     104 ..      59     133 ..      35     145 .. 0.72

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 7.7e-05
   TIGR02738  34 ltaaqdekpv...grkvlledyklvlfyqstCpyChqfapvLkqlsqqtglevla.yslDgkglaeFpdalpvtp 104
                 ++a+ ++kp    + +   ++  +v f    C  C++ apv+ +l++++   v++ + +D + + + +  + ++p
  MMETSP1137-20121227|8120_1  59 MVAQLKNKPEfdaALAGAGDKLVVVDFTATWCGPCQKIAPVFAKLAEEMPNVVFVkVDVDENEDVAQECGIQAMP 133
                 5566677776554455555667778899999***************99876665426677776666666666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (163 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       185  (0.0451); expected 82.0 (0.02)
Passed bias filter:                      155  (0.0377864); expected 82.0 (0.02)
Passed Vit filter:                        25  (0.00609459); expected 4.1 (0.001)
Passed Fwd filter:                         9  (0.00219405); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.20u 0.17s 00:00:00.37 Elapsed: 00:00:00.37
# Mc/sec: 581.47
//
Query:       MMETSP1137-20121227|8122_1  [L=513]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (513 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       192  (0.0468064); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.15s 00:00:00.49 Elapsed: 00:00:00.41
# Mc/sec: 1651.47
//
Query:       MMETSP1137-20121227|8123_1  [L=283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (283 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        89  (0.0216967); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.16s 00:00:00.38 Elapsed: 00:00:00.56
# Mc/sec: 667.02
//
Query:       MMETSP1137-20121227|8124_1  [L=109]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.053    9.8   1.2      0.066    9.5   0.8    1.1  1  TIGR00204 dxs: 1-deoxy-D-xylulose-5-phosphate synthase


Domain annotation for each model (and alignments):
>> TIGR00204  dxs: 1-deoxy-D-xylulose-5-phosphate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   0.8   1.6e-05     0.066     117     152 ..      68     103 ..      56     105 .. 0.88

  Alignments for each domain:
  == domain 1    score: 9.5 bits;  conditional E-value: 1.6e-05
   TIGR00204 117 isaglGiavaaelkgadekvvaviGdGaltaGmale 152
                    ++G+ava ++ +   +++++iG G + a +al 
  MMETSP1137-20121227|8124_1  68 TVNAIGMAVASNAGDFGGYTIPIIGLGLIGATIALL 103
                 4579***************************99985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (109 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       153  (0.0372989); expected 82.0 (0.02)
Passed bias filter:                      100  (0.0243784); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.16u 0.16s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 513.81
//
Query:       MMETSP1137-20121227|8125_1  [L=390]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.6e-07   28.3   0.1     0.0039   13.9   0.0    3.4  3  TIGR01302 IMP_dehydrog: inosine-5'-monophosphate dehydrogenase
     0.0033   14.9   0.9       0.46    7.8   0.2    2.8  2  TIGR00393 kpsF: sugar isomerase, KpsF/GutQ family
     0.0069   13.3   0.2      0.069   10.1   0.0    2.2  2  TIGR01186 proV: glycine betaine/L-proline transport ATP binding subunit


Domain annotation for each model (and alignments):
>> TIGR01302  IMP_dehydrog: inosine-5'-monophosphate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.0     0.052        70     149     197 ..      72     127 ..      63     140 .. 0.71
   2 !    9.2   0.0   7.8e-05      0.11     142     199 ..     155     214 ..     143     227 .. 0.83
   3 !   13.9   0.0   2.9e-06    0.0039     100     153 ..     270     322 ..     251     387 .. 0.70

  Alignments for each domain:
  == domain 1    score: -0.1 bits;  conditional E-value: 0.052
   TIGR01302 149 mtkeevitvkeeidleeaeevleekkieklpvvdke........gelvglvtvkdie 197
                 ++ +++++  ++ ++++a + +  ++ + lpv +k+        + lvg++ + di+
  MMETSP1137-20121227|8125_1  72 KS-KKLVCCYANEKARDALNDMVLHQLSCLPVFEKNragdntgkESLVGVIDMVDIV 127
                 44.788999999999999999999999999999987222222223466666666665 PP

  == domain 2    score: 9.2 bits;  conditional E-value: 7.8e-05
   TIGR01302 142 skkvsevmt..keevitvkeeidleeaeevleekkieklpvvdkegelvglvtvkdieka 199
                 s +v+e+m   k+   tv+ + ++ +a +vl   +i ++++ d+++++ +lvt++d+++a
  MMETSP1137-20121227|8125_1 155 SATVKEAMHdgKRTPGTVSIHGSMLDAARVLMAYRIPRVLLHDDNEKICSLVTQSDVVNA 214
                 56788888844555567777888999******************************9875 PP

  == domain 3    score: 13.9 bits;  conditional E-value: 2.9e-06
   TIGR01302 100 edvlelkekkgisgvpvvedgkeegklvGivtkkdlrfvkdkskkvsevmtkee 153
                  ++ +l++ +++s++pv+ d++++ kl+G ++++d+r + +++   +++ t + 
  MMETSP1137-20121227|8125_1 270 IEAFQLMAAEQVSAIPVIADNQSQ-KLLGSISARDIRDIVHEDDFPKTLYTLNT 322
                 56778999************7776.**********9987777665555555333 PP

>> TIGR00393  kpsF: sugar isomerase, KpsF/GutQ family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.8   0.2   0.00034      0.46     232     266 ..     262     298 ..     155     300 .. 0.67
   2 ?   -1.6   0.0      0.25   3.5e+02     238     265 ..     349     376 ..     305     383 .. 0.68

  Alignments for each domain:
  == domain 1    score: 7.8 bits;  conditional E-value: 0.00034
   TIGR00393 232 tlksdallveakellkkrkitslvvvdde..nkllGv 266
                 ++ +d+l++ea +l+ ++++ +++v+ d+  +kllG 
  MMETSP1137-20121227|8125_1 262 AIGQDKLAIEAFQLMAAEQVSAIPVIADNqsQKLLGS 298
                 3457888888888888888888888766522466665 PP

  == domain 2    score: -1.6 bits;  conditional E-value: 0.25
   TIGR00393 238 llveakellkkrkitslvvvddenkllG 265
                    +    l++ ki+ + v+d+++ +  
  MMETSP1137-20121227|8125_1 349 TFKDVVATLHQFKIHRVWVADGQGTVRH 376
                 3344444555666666666666655544 PP

>> TIGR01186  proV: glycine betaine/L-proline transport ATP binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.0     0.043        59     313     360 ..     170     218 ..     152     220 .. 0.78
   2 !   10.1   0.0     5e-05     0.069     219     302 ..     228     312 ..     223     332 .. 0.77

  Alignments for each domain:
  == domain 1    score: 0.4 bits;  conditional E-value: 0.043
   TIGR01186 313 ltvdeqtllsellskvlkagik.vpvvdedqrlvGivsraslvdaldds 360
                  tv+ +  + +  +++    i+ v + d+++++  +v+++ +v+al+d 
  MMETSP1137-20121227|8125_1 170 GTVSIHGSMLDAARVLMAYRIPrVLLHDDNEKICSLVTQSDVVNALYDH 218
                 466666677777888888888889999*******************985 PP

  == domain 2    score: 10.1 bits;  conditional E-value: 5e-05
   TIGR01186 219 rnPaneyveefiekvdlsqvldveriakraetvlitktadkglrsalkllkdedveslyvv..drekklvGvvdvesikkarkkaq 302
                 + P  ++  + +++  l+  +d   +  +  ++l+ +  dk   +a++l+  e+v+ + v+  ++ +kl+G +++ +i    ++++
  MMETSP1137-20121227|8125_1 228 NRPVSQFH-RIVQGDTLVSLSDWPTMVVKDGKNLVAIGQDKLAIEAFQLMAAEQVSAIPVIadNQSQKLLGSISARDIRDIVHEDD 312
                 55665554.356666677777777777777788999999*******************9994345689*******99998877765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (390 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       149  (0.0363237); expected 82.0 (0.02)
Passed bias filter:                      103  (0.0251097); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.35u 0.17s 00:00:00.52 Elapsed: 00:00:00.35
# Mc/sec: 1470.74
//
Query:       MMETSP1137-20121227|8126_1  [L=381]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (381 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        95  (0.0231594); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.16s 00:00:00.44 Elapsed: 00:00:00.37
# Mc/sec: 1359.13
//
Query:       MMETSP1137-20121227|8127_1  [L=340]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.4e-48  161.8   0.5    6.8e-48  161.4   0.4    1.1  1  TIGR01357 aroB: 3-dehydroquinate synthase


Domain annotation for each model (and alignments):
>> TIGR01357  aroB: 3-dehydroquinate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  161.4   0.4   1.7e-51   6.8e-48      83     333 ..       2     258 ..       1     264 [. 0.93

  Alignments for each domain:
  == domain 1    score: 161.4 bits;  conditional E-value: 1.7e-51
   TIGR01357  83 ksvlvaiGGGvvgDlaGFvAatylRGirlvqvPTtllamvDssvG.GKtginlplgkNliGafyqPkaVlidlkvletlperelreGmaEviKhgliadaelfeelekneklllklaelealeelikrsievKaevVeeDekesglRalLNfGHtlgHaiEallkyklsHGeaVaiGmvveaklseklgllkaellerlvallkklglptklkkklsveellkallkDKK.....negskiklvlleeiGkaalase 333
                 k+v++ +GGG+v    G +A    RGirlvq PT++l + D++    K +in+ + kN++G ++ P++ lid+++ etl   el++G++E+ K +++ + + +e ++k++ +     + + l e+   ++  K  + + D+ke+ l  l  +GHt+gHa+E + + + sHGe V+iGm  + ++s+k+g+++  ++e + al+ +l ++++++k+  +ee+l+++++D K     ++++   ++l ++iG++   ++
  MMETSP1137-20121227|8127_1   2 KTVVMPVGGGIVANTYGLAAGLLFRGIRLVQCPTSFLNAHDAAASsQKQAINHTGYKNIVGLYHVPTMALIDTSFYETLGVTELKAGLGELTKNAALFGGQHYELIKKTTMTKGVALSGDDLVEATYIGLGAKDMLLAIDPKEKHLALLFEYGHTVGHALELTQGVRTSHGEGVTIGMLAASYISNKMGIMSDADREAHDALVLALDPQIEIPKRDITEEVLDKVMHDNKrgylpEREGFCPFILNQRIGEMHAPNK 258
                 578999***********************************9986269**********************************************************998876555578899*********************************************************************************************99999*********99444444788899999999999887665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (340 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        98  (0.0238908); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.27u 0.11s 00:00:00.38 Elapsed: 00:00:00.68
# Mc/sec: 659.95
//
Query:       MMETSP1137-20121227|8128_1  [L=700]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   1.9e-219  728.1   0.0   2.2e-219  727.9   0.0    1.0  1  TIGR00232 tktlase_bact: transketolase
    5.1e-25   85.9   0.7    2.3e-14   50.7   0.0    3.4  3  TIGR00204 dxs: 1-deoxy-D-xylulose-5-phosphate synthase
    2.6e-09   33.5   1.2    0.00023   17.0   0.1    2.2  2  TIGR00759 aceE: pyruvate dehydrogenase (acetyl-transferring), homodimeric type
    1.5e-08   31.7   0.6    2.6e-08   31.0   0.4    1.3  1  TIGR03181 PDH_E1_alph_x: pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit
      8e-07   25.5   0.5     0.0018   14.4   0.1    2.2  2  TIGR03186 AKGDH_not_PDH: alpha-ketoglutarate dehydrogenase
    4.4e-05   20.4   0.2    9.9e-05   19.2   0.1    1.5  1  TIGR03182 PDH_E1_alph_y: pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit


Domain annotation for each model (and alignments):
>> TIGR00232  tktlase_bact: transketolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  727.9   0.0  3.3e-222  2.2e-219       4     650 ..      54     699 ..      51     700 .] 0.94

  Alignments for each domain:
  == domain 1    score: 727.9 bits;  conditional E-value: 3.3e-222
   TIGR00232   4 vnairlLavdaiekaksGhpGaplGlapiaevlwkkflklnPtnpkWinRDRfvlsaGhgsmllYsllhllGydlsiedlkqfrqlesktpghPelaetagvevttGPLGqGianavGlalaektlaaefnkesaeivdhytyvlvGDGdlqeGisseaaslaGhlkLgkLivlyDsnkisidgeveksfsedvkkRfeaygWevlevedgedleeikkaiekakkskd.kPtlikvktiigfgspnkegteevhgaplkeeevkllkkklglnyee.FevpqevydffkkevkergekaeeewneklakykkkypelakeferrlsgelpadyekklkefkakkkalatRkaskevlnalakelpellggsaDlarsnltklkeskelk.enalgnyiryGvRefamgaimngialhGglkpygatFlvFvdYakpaiRlaaLmklkviyvythDsigvGeDGpthqpveqlaslRaipnlsvwRPaDeketaaayklalesqdaptvlilsRqnlpqle....esslekvlkGgYvlkdskn.PdiiliatGsevelaveaakkLakenikvrvvslpsidlldkqdeeYresvlpanvt..llaieasaaleWykyaklegavlgidsfGesakgdkvfekfgFtvenvvakak 650
                 +   r La+d+i+ka+sGh G+plG a+i  vl+ + + +nP +p+W+nRDRfvlsaGhgsm lYs lh++Gydl+++++ +fr  +sktpghPe++ t+gve+ttGPLGqG+an+vGla a k   a++n  +++i+dh++ vl+GDG+lqeGi++ea  +aGh +L++Li +yDsn +++d   e++ sedv +Rfea+gWevle  dg+d+++i+ka ++ak+s++ kPtli++ktiig+g  + +gt ++hg +   +  +  ++ lgl  ++ ++v+ e+ydff+++ ke  +k+ e+w e++++ + + p++ak ++ +  g +p d ++ ++efk   +++atR+a  +vl+ +a+++p +++gsaDl  sn+  +k+ ++++ +n +g+++ yG+Re+amgaimng+a +G +++ g+tFlvF+dY+++a+R+aaL++l+  y+ thDsigvGeDGpthqpve+++s+R+ipnl v+RP D+ etaaay  al+++++pt+lilsRqnlp l     e++++ ++ GgYvl +  +    i++a Gse+++aveaak++       rvvs+p+++++++q++eY+esvlp++ +    a+ea+ +  Wyk+a+++   +g+dsfG sa+gd+v+e +g tv ++v+ +k
  MMETSP1137-20121227|8128_1  54 ADEARGLAIDSISKAESGHMGLPLGCAEIGAVLFGQEMSYNPVDPEWVNRDRFVLSAGHGSMFLYSWLHMAGYDLPMKEVENFRAKDSKTPGHPEFGWTPGVEATTGPLGQGVANGVGLAAAAKLAGATLNTAEHSIIDHHVVVLCGDGCLQEGIANEAVAFAGHEQLDNLILMYDSNGVTLDKMAEHTQSEDVGMRFEAQGWEVLEI-DGHDMDAITKAYQHAKNSDNgKPTLIICKTIIGKGIDEIAGTCAAHGEAGV-KYKDSGRESLGLPADKnWYVSPETYDFFTEHKKELIAKY-EAWGETFKAWEAANPDKAKMLADAKAGVVP-DLDSMMPEFK-VGAQIATRNAGADVLQPIAQSMPFYVSGSADLHGSNKNYMKGVGDFSkNNYAGRNFYYGIREHAMGAIMNGMAYYGLFRVSGSTFLVFSDYMRAAVRVAALSHLPINYIWTHDSIGVGEDGPTHQPVETVSSMRLIPNLDVMRPGDADETAAAYVHALNRKEGPTALILSRQNLPVLGeasaEDKKAGTKMGGYVLVKETEeLSSIILAVGSELSMAVEAAKEIG---GGCRVVSMPCVEAFERQSAEYKESVLPKAMKskTTAVEAGVTALWYKFADKV---MGVDSFGLSAPGDQVYEAKGITVPKLVELVK 699
                 556799********************************************************************************************************************************************************************************************************98.****************99755**************************8754.44577899999999998*********9999888777665.68*************999988887766555.789*******.6889**************************************9976515667999**************************************************************************************************************************85655556667899****8776655899999*************9985...579************************998766899**************99...**************************99887 PP

>> TIGR00204  dxs: 1-deoxy-D-xylulose-5-phosphate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.7   0.0     2e-08   1.4e-05      16     171 ..      48     230 ..      34     238 .. 0.74
   2 !   10.0   0.0   6.9e-05     0.047     231     282 ..     248     300 ..     231     322 .. 0.77
   3 !   50.7   0.0   3.3e-17   2.3e-14     348     530 ..     440     626 ..     428     651 .. 0.81

  Alignments for each domain:
  == domain 1    score: 21.7 bits;  conditional E-value: 2e-08
   TIGR00204  16 deleklsdelrekllesvsa.sgGhlasglGvveltvalh...kvfd......tdkdkliwdvghqa...yahklltGr...reelstlrqkkGla.gfpkrseseydvlsaGhsstsisaglGiavaaelkga..........dekvvaviGdGaltaGmalealnhaGdlkkdllvilndn 171
                 + l k +de r   ++s+s+ ++Gh++  lG  e+   l+   + ++      +++d+++   gh +   y+   ++G    ++e++ +r k+  + g+p  + +     ++G     ++ g+G+a+aa+l ga          d++vv + GdG+l  G+a ea+  aG+++ d l+++ d 
  MMETSP1137-20121227|8128_1  48 AALAKAADEARGLAIDSISKaESGHMGLPLGCAEIGAVLFgqeMSYNpvdpewVNRDRFVLSAGHGSmflYSWLHMAGYdlpMKEVENFRAKDSKTpGHPEFGWTPGVEATTGPLGQGVANGVGLAAAAKLAGAtlntaehsiiDHHVVVLCGDGCLQEGIANEAVAFAGHEQLDNLILMYDS 230
                 6789999***********96369***********9888763224566444444579*********876557777788863336788888888865414454444444556788888899999999999987765222222233356789999********************99988887774 PP

  == domain 2    score: 10.0 bits;  conditional E-value: 6.9e-05
   TIGR00204 231 gvlfeelGfnyiGPvdGhdlselietlknakklk..gPvllhvktkkGkGykla 282
                 g+ fe  G + +  +dGhd++++ +++++ak+    +P l+  kt  GkG +  
  MMETSP1137-20121227|8128_1 248 GMRFEAQGWEVL-EIDGHDMDAITKAYQHAKNSDngKPTLIICKTIIGKGIDEI 300
                 778888888877.6****************9876226*************8754 PP

  == domain 3    score: 50.7 bits;  conditional E-value: 3.3e-17
   TIGR00204 348 kkfPkryfdvaiaeqhavtlaaalaieGlkPvvaiystflqra.yd.qvvhdvaiqklpvllaidraGi.vGadGethqGlfdisylrsiPnlvlmaPkdenelkqmlvtaleydegpialryPrGna..vgveltee..ekleiGksellrkgedi..lllgfGtlveealevaeelkekgieatvvdlrf 530
                 +++  r f  +i e    ++  ++a  Gl  v    stfl  + y    v  +a+++lp+ +      i vG+dG+thq +  +s +r iPnl +m P d +e+  + v al+ +egp+al   r n   +g    e+     ++G   l+++ e++  ++l+ G+ +++a+e+a+e+      ++vv +  
  MMETSP1137-20121227|8128_1 440 NNYAGRNFYYGIREHAMGAIMNGMAYYGLFRVS--GSTFLVFSdYMrAAVRVAALSHLPINYIWTHDSIgVGEDGPTHQPVETVSSMRLIPNLDVMRPGDADETAAAYVHALNRKEGPTALILSRQNLpvLGEASAEDkkAGTKMGGYVLVKETEELssIILAVGSELSMAVEAAKEIG---GGCRVVSMPC 626
                 468888899999886667889999999986654..58998643254156888899*****87665555559*******************************************************9542454444444466899*******999875589************999876...4567776655 PP

>> TIGR00759  aceE: pyruvate dehydrogenase (acetyl-transferring), homodimeric type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.0   3.7e-07   0.00025     215     288 ..     189     260 ..     102     262 .. 0.82
   2 !   17.0   0.1   3.4e-07   0.00023     354     409 ..     257     312 ..     251     351 .. 0.82

  Alignments for each domain:
  == domain 1    score: 16.9 bits;  conditional E-value: 3.7e-07
   TIGR00759 215 dtsdqkvyaflGdGemdepeskgaitlaarekldnlvfvincnlqrldGPvrgngkiiqeleslfrGagwnvik 288
                 +  d++v  + GdG + e  +  a+ +a++e+ldnl+++ ++n   ld   +      +++   f+  gw+v+ 
  MMETSP1137-20121227|8128_1 189 SIIDHHVVVLCGDGCLQEGIANEAVAFAGHEQLDNLILMYDSNGVTLDKMAE--HTQSEDVGMRFEAQGWEVLE 260
                 55689***************************************99997544..34457788888888888875 PP

  == domain 2    score: 17.0 bits;  conditional E-value: 3.4e-07
   TIGR00759 354 ealnrGghdvkkvyaaykaakea.kGkptvilaktikGyglgeaaearnvahqvkkl 409
                 e l+  ghd+  +  ay++ak++ +Gkpt+i+ kti G g+  +  +  +ah    +
  MMETSP1137-20121227|8128_1 257 EVLEIDGHDMDAITKAYQHAKNSdNGKPTLIICKTIIGKGID-EIAGTCAAHGEAGV 312
                 568889**************98637****************8.55567778866555 PP

>> TIGR03181  PDH_E1_alph_x: pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.0   0.4   3.7e-11   2.6e-08     123     241 ..     161     287 ..     150     292 .. 0.84

  Alignments for each domain:
  == domain 1    score: 31.0 bits;  conditional E-value: 3.7e-11
   TIGR03181 123 pigtqvlhAaGvAlalklkg..........ekevavayiGdGgtsegdfyealnfAavfkap.vvfvvqNNqwAISvprskqtaaktlaqkavaagipgvqvDGnDvlAvyevvkealekArkgegPtLi 241
                 p+g+ v   +G+A a+kl g           ++ +v+++GdG   eg  +ea+ fA+  ++  ++++   N+      +++ t+++++  +  a g + +++DG D+ A+ ++ ++a + + ++++PtLi
  MMETSP1137-20121227|8128_1 161 PLGQGVANGVGLAAAAKLAGatlntaehsiIDHHVVVLCGDGCLQEGIANEAVAFAGHEQLDnLILMYDSNGVTLDK-MAEHTQSEDVGMRFEAQGWEVLEIDGHDMDAITKAYQHAKN-S-DNGKPTLI 287
                 78999999************99988876654788999***********************97257777889888865.567788889********************999999887754.3.44459998 PP

>> TIGR03186  AKGDH_not_PDH: alpha-ketoglutarate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.9   0.0   3.2e-05     0.022     216     288 ..     190     260 ..     155     262 .. 0.77
   2 !   14.4   0.1   2.6e-06    0.0018     354     397 ..     257     301 ..     247     316 .. 0.84

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 3.2e-05
   TIGR03186 216 tegrkvwglfgdgemdepesiaalslaarerldnlvfvincnlqrldgpvrgngriideleslfagagwnvik 288
                   +++v  l gdg ++e  +  a+++a  e+ldnl+++ + n   ld          +++  +f   gw+v+ 
  MMETSP1137-20121227|8128_1 190 IIDHHVVVLCGDGCLQEGIANEAVAFAGHEQLDNLILMYDSNGVTLDKMAE--HTQSEDVGMRFEAQGWEVLE 260
                 45789999************************************9997654..34467888899999998876 PP

  == domain 2    score: 14.4 bits;  conditional E-value: 2.6e-06
   TIGR03186 354 drlrrgghdvrklyaayerakkh.kgrptvilaktkkgfglgaig 397
                 + l+  ghd+  +  ay++ak+  +g+pt+i+ kt  g g+  i 
  MMETSP1137-20121227|8128_1 257 EVLEIDGHDMDAITKAYQHAKNSdNGKPTLIICKTIIGKGIDEIA 301
                 668889**************97537***************98875 PP

>> TIGR03182  PDH_E1_alph_y: pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   0.1   1.5e-07   9.9e-05     112     233 ..     162     291 ..     157     296 .. 0.79

  Alignments for each domain:
  == domain 1    score: 19.2 bits;  conditional E-value: 1.5e-07
   TIGR03182 112 vgaqvplatGlafaekyk..........kedevtlaffGdgavnqGqvyEslnlaalwklP.vifviennkyamGtaverssaekdlakkgesfgikglevdGmdvlavreaakeavervragkgPvllelkt 233
                 +g++v+ ++Gla a+k+             d+ +++++Gdg  ++G   E++ +a   +l  +i++ + n  ++    e +++++d+ ++ e+ g + le+dG d+ a+++a ++a +   ++ +P+l+ +kt
  MMETSP1137-20121227|8128_1 162 LGQGVANGVGLAAAAKLAgatlntaehsIIDHHVVVLCGDGCLQEGIANEAVAFAGHEQLDnLILMYDSNGVTLDKMAE-HTQSEDVGMRFEAQGWEVLEIDGHDMDAITKAYQHAKNS--DNGKPTLIICKT 291
                 57778888888888888777777754432244567889*******************9996367777889888876655.56678999999999999************9999988764..677899998888 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (700 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       117  (0.0285227); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.62u 0.13s 00:00:00.75 Elapsed: 00:00:00.78
# Mc/sec: 1184.52
//
Query:       MMETSP1137-20121227|8129_1  [L=434]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (434 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        50  (0.0121892); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.14s 00:00:00.43 Elapsed: 00:00:00.71
# Mc/sec: 806.81
//
Query:       MMETSP1137-20121227|8130_1  [L=177]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (177 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        90  (0.0219405); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.14s 00:00:00.32 Elapsed: 00:00:00.51
# Mc/sec: 458.08
//
Query:       MMETSP1137-20121227|8131_1  [L=802]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   1.7e-106  355.0   0.2    1.3e-83  279.4   0.2    2.1  2  TIGR00958 3a01208: antigen peptide transporter 2
    9.1e-96  319.6   0.4    3.7e-82  274.6   0.0    2.1  2  TIGR02204 MsbA_rel: ABC transporter, permease/ATP-binding protein
    4.7e-93  310.4   0.7    3.7e-82  274.4   0.2    2.1  2  TIGR02203 MsbA_lipidA: lipid A export permease/ATP-binding protein MsbA
    2.8e-68  228.7   0.9    1.9e-66  222.6   0.2    2.2  2  TIGR01846 type_I_sec_HlyB: type I secretion system ATPase
    4.5e-67  224.6   1.5    9.8e-63  210.3   0.2    2.3  2  TIGR03796 NHLM_micro_ABC1: NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein
      6e-66  221.1   5.2    5.2e-63  211.4   1.0    2.6  2  TIGR03797 NHLM_micro_ABC2: NHLM bacteriocin system ABC transporter, ATP-binding protein
      1e-58  197.1   0.6    4.6e-57  191.6   0.1    2.2  2  TIGR03375 type_I_sec_LssB: type I secretion system ATPase
    1.5e-54  183.5   0.2    2.3e-54  182.8   0.1    1.2  1  TIGR01192 chvA: glucan exporter ATP-binding protein
    4.3e-54  182.2   1.3    1.8e-51  173.5   0.0    2.1  2  TIGR02857 CydD: thiol reductant ABC exporter, CydD subunit
    1.5e-47  160.2   3.4    2.5e-44  149.5   0.3    2.7  2  TIGR01842 type_I_sec_PrtD: type I secretion system ATPase
    1.1e-46  157.5   0.0    2.7e-46  156.2   0.0    1.5  2  TIGR01193 bacteriocin_ABC: ABC-type bacteriocin transporter
    1.2e-40  137.5   0.0    2.9e-40  136.2   0.0    1.6  1  TIGR02868 CydC: thiol reductant ABC exporter, CydC subunit
    2.6e-35  119.8   0.0    5.4e-35  118.7   0.0    1.5  1  TIGR00972 3a0107s01c2: phosphate ABC transporter, ATP-binding protein
    1.2e-31  107.8   0.6    5.2e-31  105.7   0.4    1.9  1  TIGR03864 PQQ_ABC_ATP: ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system
    2.1e-30  103.7   0.7    1.7e-29  100.7   0.5    2.0  1  TIGR02314 ABC_MetN: D-methionine ABC transporter, ATP-binding protein
      8e-30  102.0   0.0    2.1e-29  100.6   0.0    1.5  1  TIGR01186 proV: glycine betaine/L-proline transport ATP binding subunit
    1.3e-29  100.2   0.1    5.3e-29   98.2   0.0    1.8  2  TIGR00957 MRP_assoc_pro: multi drug resistance-associated protein (MRP)
    3.6e-29   99.7   0.0    3.1e-28   96.6   0.0    2.1  1  TIGR02315 ABC_phnC: phosphonate ABC transporter, ATP-binding protein
    1.4e-28   97.9   0.1    1.2e-27   94.8   0.1    2.1  1  TIGR02673 FtsE: cell division ATP-binding protein FtsE
      2e-28   97.4   0.1      8e-28   95.5   0.1    1.9  1  TIGR00960 3a0501s02: type II secretory pathway family protein
    3.4e-28   96.5   0.4    1.5e-27   94.4   0.3    1.9  1  TIGR01187 potA: polyamine ABC transporter, ATP-binding protein
    1.2e-27   94.8   0.6    7.9e-27   92.1   0.4    2.0  1  TIGR00968 3a0106s01: sulfate ABC transporter, ATP-binding protein
    1.3e-27   94.6   0.2    1.4e-26   91.3   0.1    2.2  1  TIGR01277 thiQ: thiamine ABC transporter, ATP-binding protein
    1.4e-26   91.4   0.6    4.5e-26   89.7   0.4    1.7  1  TIGR03265 PhnT2: putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein
      2e-26   90.6   0.0    2.9e-25   86.8   0.0    2.1  1  TIGR03608 L_ocin_972_ABC: putative bacteriocin export ABC transporter, lactococcin 972 group
    2.2e-26   90.6   0.1    5.4e-26   89.4   0.1    1.6  1  TIGR02982 heterocyst_DevA: ABC exporter ATP-binding subunit, DevA family
    2.6e-26   90.5   0.3      3e-25   87.0   0.2    2.1  1  TIGR02142 modC_ABC: molybdate ABC transporter, ATP-binding protein
    6.2e-26   89.2   0.2    1.7e-15   54.9   0.1    2.2  2  TIGR01188 drrA: daunorubicin resistance ABC transporter, ATP-binding protein
      1e-25   88.6   0.1      2e-14   51.5   0.1    2.2  2  TIGR02769 nickel_nikE: nickel import ATP-binding protein NikE
    1.7e-25   87.6   0.3      5e-25   86.1   0.2    1.7  1  TIGR03258 PhnT: 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT
    1.8e-24   84.3   0.1    4.1e-24   83.1   0.1    1.5  1  TIGR03410 urea_trans_UrtE: urea ABC transporter, ATP-binding protein UrtE
    3.2e-24   83.4   1.2    1.8e-23   80.9   0.8    2.0  1  TIGR03873 F420-0_ABC_ATP: proposed F420-0 ABC transporter, ATP-binding protein
    1.1e-23   81.8   0.1    1.7e-22   77.8   0.1    2.2  1  TIGR02211 LolD_lipo_ex: lipoprotein releasing system, ATP-binding protein
    1.6e-23   81.0   1.0    8.1e-23   78.7   0.1    2.4  1  TIGR01166 cbiO: cobalt ABC transporter, ATP-binding protein
    9.2e-22   75.3   0.1    7.8e-16   55.9   0.0    2.6  2  TIGR03005 ectoine_ehuA: ectoine/hydroxyectoine ABC transporter, ATP-binding protein EhuA
    2.3e-20   70.8   0.7    9.2e-13   45.9   0.0    2.8  2  TIGR02770 nickel_nikD: nickel import ATP-binding protein NikD
    6.1e-20   69.5   0.3    4.2e-10   37.3   0.1    2.3  2  TIGR02324 CP_lyasePhnL: phosphonate C-P lyase system protein PhnL
    7.7e-20   68.6   0.0    1.3e-19   67.9   0.0    1.2  1  TIGR02633 xylG: D-xylose ABC transporter, ATP-binding protein
    1.2e-19   68.7   0.5    6.8e-11   40.0   0.1    2.3  2  TIGR01184 ntrCD: nitrate ABC transporter, ATP-binding proteins C and D
    1.2e-18   65.1   0.1    5.1e-18   63.0   0.1    1.8  1  TIGR03415 ABC_choXWV_ATP: choline ABC transporter, ATP-binding protein
    3.6e-18   63.9   0.0    7.3e-18   62.9   0.0    1.5  1  TIGR03411 urea_trans_UrtD: urea ABC transporter, ATP-binding protein UrtD
    5.8e-18   62.6   0.0    4.2e-17   59.8   0.0    2.0  1  TIGR00955 3a01204: pigment precursor permease
    1.4e-17   61.8   0.0    1.3e-09   35.6   0.0    2.1  2  TIGR01978 sufC: FeS assembly ATPase SufC
    4.8e-17   58.6   0.1    6.9e-08   28.2   0.0    2.1  2  TIGR01271 CFTR_protein: cystic fibrosis transmembrane conductor regulator (CFTR)
    6.4e-17   59.1   0.3    1.3e-12   44.9   0.1    2.1  2  TIGR03269 met_CoM_red_A2: methyl coenzyme M reductase system, component A2
    6.7e-17   59.3   0.2    1.9e-16   57.8   0.2    1.7  1  TIGR01288 nodI: nodulation ABC transporter NodI
    3.1e-16   57.5   0.1    4.7e-15   53.6   0.1    2.2  1  TIGR01189 ccmA: heme ABC exporter, ATP-binding protein CcmA
    8.6e-16   56.1   0.0    1.4e-08   32.6   0.0    2.2  2  TIGR03740 galliderm_ABC: lantibiotic protection ABC transporter, ATP-binding subunit
      1e-15   55.9   0.2    1.6e-11   42.2   0.1    2.3  2  TIGR03771 anch_rpt_ABC: anchored repeat-type ABC transporter, ATP-binding subunit
    6.2e-15   53.3   0.3    9.2e-08   29.7   0.1    2.1  2  TIGR03522 GldA_ABC_ATP: gliding motility-associated ABC transporter ATP-binding subunit GldA
      5e-14   49.6   0.0    1.3e-08   31.7   0.0    2.1  2  TIGR03719 ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family
      9e-14   49.4   0.4    3.2e-13   47.6   0.3    1.8  1  TIGR02323 CP_lyasePhnK: phosphonate C-P lyase system protein PhnK
      1e-12   45.3   0.1    3.6e-05   20.3   0.0    3.1  3  TIGR01194 cyc_pep_trnsptr: cyclic peptide transporter
    2.4e-11   39.1   0.0    3.7e-11   38.4   0.0    1.1  1  TIGR01257 rim_protein: rim ABC transporter
    6.2e-11   39.2   0.0    3.1e-07   27.0   0.0    2.1  2  TIGR00954 3a01203: peroxysomal long chain fatty acyl transporter
      4e-09   32.5   0.1    8.1e-06   21.5   0.0    2.0  2  TIGR00956 3a01205: pleiotropic drug resistance family protein
      2e-08   30.7   0.5    5.8e-05   19.3   0.1    2.1  2  TIGR00630 uvra: excinuclease ABC subunit A
  ------ inclusion threshold ------
       0.02   12.4   0.0      0.053   11.0   0.0    1.7  1  TIGR00455 apsK: adenylylsulfate kinase
       0.02   10.9   0.0       0.63    6.0   0.0    2.1  2  TIGR00929 VirB4_CagE: type IV secretion/conjugal transfer ATPase, VirB4 family


Domain annotation for each model (and alignments):
>> TIGR00958  3a01208: antigen peptide transporter 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.6   0.0   3.2e-23   2.2e-21     194     377 ..     135     318 ..      56     358 .. 0.86
   2 !  279.4   0.2   1.8e-85   1.3e-83     433     711 .]     474     767 ..     459     767 .. 0.87

  Alignments for each domain:
  == domain 1    score: 73.6 bits;  conditional E-value: 3.2e-23
   TIGR00958 194 dksvealakaiflltllslaSsllaglrgGsfeyamarinlriredlfksllrQdigFfdenktGeltSRlssDtstvseslslnvnvllrnlvkllgllifmlslSprLtlvtllalPlvllaekvfgkvyqklseevqeavakanqvaeEalsglrTVrSFaaEekEasrfkekleeilqln 377
                  ++ ++l+++ +ll ++ +a  + +g+  G  ++a+ r+ +  +++ +ks++rQd+ +fd+n+  el   +++  st+ + l ++v  l  n   +lg l++ +   p  ++v + + P+v+ a+  +++v q+ ++++q a a+a+  a+Eals++rT+  F+ Ee+ a+ +++ l++    +
  MMETSP1137-20121227|8131_1 135 AFDQDELTRQAVLLVVVGVALWFGTGIYMGATDIAKVRMMACYKKEYVKSIIRQDLSWFDTNNPSELAPGIGAAMSTIEDGLGNKVMQLFENSGTGLGCLGIAFYYNPWVSFVVVATFPVVMGAAGLMNHVQQNSTKNIQAAYAEAGGRANEALSSMRTIACFSLEERTAKLYESGLKRAEVAA 318
                 456889*************************************************************************************************************************************************************************999875443 PP

  == domain 2    score: 279.4 bits;  conditional E-value: 1.8e-85
   TIGR00958 433 avreLsevysellkavGasekvFeyldRkPqlel..sgtlapknleGkveFqdVsFsYPsrpdkpvlkdLtftlepGevvalVGPsGsGKStvaallenlYqPtgGqvllDgkplkeydhkylhrkvalVgqEPvlfsgsvreNiaYGltk.te..deevtaaakaanahdFiselekgydtevgekGsqlsgGqkqriAiARALvrkPrvLiLDeAtSALDaeveqllqe........sksa..ksrtvlliahrLstvekadkilvlkkgsvvelGthkqLmekedvykqlv 711
                 ++  +++  s ++ka  a+ kv   ++R P+++   +   + ++++G++e +dV F+YPs pd++v ++ ++ + +G+vval G sGsGKSt++ l+e++Y+P  G v  Dg++++ ++  +l+++++lVgqEP lf g+v eNiaYG    ++   ++       + + +      + y t+vg  G  lsgGqkqr+AiARALvrkP+vL+LDeAtSALD e+e+++q+        +k+   ++rt + iahrL t++++dki+v+++g+v e Gth+ Lmek++vy +lv
  MMETSP1137-20121227|8131_1 474 QLGLIGQNISPIVKARQAAVKVLRTIERMPTIDAfsTEGNTLTQVRGEIEVKDVYFAYPSAPDVQVCNGYSLHVPAGQVVALCGQSGSGKSTIINLVERFYDPHRGAVHFDGVDVRTLNVSWLRQQIGLVGQEPXLFVGTVAENIAYGKXXgCDaxGDRXGGRXXPTRTXSSXXXCXSXYXTQVGXXGXKLSGGQKQRVAIARALVRKPAVLLLDEATSALDNESERIVQAaldeiikeQKKLtgRGRTTITIAHRLTTIRNSDKIAVVHRGQVLEEGTHNALMEKHGVYFELV 767
                 44555666778899999**************9862234456789********************************************************************************************************7652443356666667777888888999999********************************************8888887666556433333322479******************************************9997 PP

>> TIGR02204  MsbA_rel: ABC transporter, permease/ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.2   0.0   6.6e-14   4.6e-12      53     236 ..     137     320 ..     101     350 .. 0.88
   2 !  274.6   0.0   5.4e-84   3.7e-82     287     575 ..     471     770 ..     452     771 .. 0.90

  Alignments for each domain:
  == domain 1    score: 43.2 bits;  conditional E-value: 6.6e-14
   TIGR02204  53 esellneafalllvvvlvlalatalrfylvsslGervvadlrkavfahllelspaffdknrsgevlsrltadttllksvvGaslsialrnlllliGalamlvitsvkltslvllavPlvllPillfgrrvrklsresqdrladasayagealeaiktvqayaseeaersrfdaavekayeaark 236
                 ++++l++  +ll+vv + l ++t + +        r++a  +k+  + +++ + ++fd+n+ +e+   + a  + ++  +G  +   + n  + +G+l + ++ ++ ++ +v+++ P+v+    l+ +  ++ +++ q   a+a++ a+eal+ ++t+ +++ ee+ ++ +++ + +a  aa+ 
  MMETSP1137-20121227|8131_1 137 DQDELTRQAVLLVVVGVALWFGTGIYMGATDIAKVRMMACYKKEYVKSIIRQDLSWFDTNNPSELAPGIGAAMSTIEDGLGNKVMQLFENSGTGLGCLGIAFYYNPWVSFVVVATFPVVMGAAGLMNHVQQNSTKNIQAAYAEAGGRANEALSSMRTIACFSLEERTAKLYESGLKRAEVAAVW 320
                 45688899999999999999999997777777778*************************************************************************************99999988888889999**********************************9998888666653 PP

  == domain 2    score: 274.6 bits;  conditional E-value: 5.4e-84
   TIGR02204 287 vagslgalsevlgelqraaGaaerliellkaksdikaPaqpkalpakvrgeiefeevkfayParpdqkaldgldltvrpGetvalvGPsGaGkstllelllrfydPqsGailldGvdlreldpeelrerlalvpqdsalfaasvleniryGrpdasdeevea...aakaaeadefisklpeGydtllGergvtLsGGqkqriaiarailkdapiLLLdeatsaLdaeseqlvqqaleelmk........grttlviahrLatvlkadrivvldkGriveqGthaeLiakggLyarlarLq 575
                  a+ lg +++ ++ + +a  aa ++   ++  ++i+a +++ +  ++vrgeie+++v fayP+ pd ++ +g +l+v +G++val G sG+Gkst+++l+ rfydP++Ga+ +dGvd+r l+ + lr+++ lv q++ lf + v eni+yG+    d+   +       ++         + y t++G  g +LsGGqkqr+aiara++++  +LLLdeatsaLd ese+ vq al+e++k        grtt+ iahrL+t++++d+i+v+ +G++ e+Gth++L++k g+y +l++ q
  MMETSP1137-20121227|8131_1 471 GAQQLGLIGQNISPIVKARQAAVKVLRTIERMPTIDAFSTEGNTLTQVRGEIEVKDVYFAYPSAPDVQVCNGYSLHVPAGQVVALCGQSGSGKSTIINLVERFYDPHRGAVHFDGVDVRTLNVSWLRQQIGLVGQEPXLFVGTVAENIAYGKXXGCDAXGDRxggRXXPTRTXSSXXXCXSXYXTQVGXXGXKLSGGQKQRVAIARALVRKPAVLLLDEATSALDNESERIVQAALDEIIKeqkkltgrGRTTITIAHRLTTIRNSDKIAVVHRGQVLEEGTHNALMEKHGVYFELVEAQ 770
                 2566788888899999****************************************************************************************************************************************86666655440005556777788888999********************************************************99863333333369*********************************************9876 PP

>> TIGR02203  MsbA_lipidA: lipid A export permease/ATP-binding protein MsbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.4   0.0   2.7e-11   1.9e-09      16     224 ..     100     311 ..      85     344 .. 0.86
   2 !  274.4   0.2   5.3e-84   3.7e-82     278     569 ..     462     770 ..     456     773 .. 0.85

  Alignments for each domain:
  == domain 1    score: 34.4 bits;  conditional E-value: 2.7e-11
   TIGR02203  16 lvlalvalvlvaatesllaallkplldegfse.....lekeevllavPllvvglvvlrGiasfvsdyllakvsnkvvrdlRkklfeklltlpsayfdkessgsllsrltfdseqvvsaatdvlkvlvretltvigllivllylsWqltlivvvllPvlallvrvvskrlrkiskeiqnsigeltkvveealqgyrvvklfggqeaeakRfdavs 224
                 + + ++a+++  a  +l+++l++  ++ + ++      ++e + +av l+vvg++++ G + +++   +akv  +     +k+ ++ +++   + fd ++ ++l   +      + + + + ++ l  ++ t +g l + +y++  ++++vv+ +Pv+  ++  +++  ++ +k+iq + +e+   ++eal+  r +  f  +e  ak ++   
  MMETSP1137-20121227|8131_1 100 ICIGVIAACGCGACMPLVLVLFAGSIESAGQAsngafDQDELTRQAVLLVVVGVALWFGTGIYMGATDIAKVRMMA--CYKKEYVKSIIRQDLSWFDTNNPSELAPGIGAAMSTIEDGLGNKVMQLFENSGTGLGCLGIAFYYNPWVSFVVVATFPVVMGAAGLMNHVQQNSTKNIQAAYAEAGGRANEALSSMRTIACFSLEERTAKLYESGL 311
                 456677777777888888877777776654444555445666678999***********************97665..567999***********************************999999*******************99*********************************************************99999887655 PP

  == domain 2    score: 274.4 bits;  conditional E-value: 5.3e-84
   TIGR02203 278 itamlalikplksLtnvsaklq...kglaaaesvfallDsppekd...eGtralervrGkvefrnvtfrypgd.drealdsislkveaGevvalvGrsGsGkstlvnllpRFyepdsGeillDgvdladlkLasLRrqvalvsqdvvLFddtiaenvaYgeleevde..aeveealaaaylkdlvdklpeGldtevGengskLsGGqRqRlaiaRallkdaPiLiLDeatsaLDneseRlvqaaLerlmk........gRttlviahRLstiekaDrivvlddGkiverGtheeLlarnGlYasLhkiq 569
                 + a+l + +  ++L  + +++    k   aa +v+  +++ p  d   +  ++l +vrG++e+++v f yp++ d+++ ++ sl+v aG+vval G+sGsGkst++nl+ RFy+p++G + +Dgvd++ l+++ LR+q+ lv+q+  LF +t+aen+aYg+    d   ++           +      +   t+vG  g kLsGGq+qR+aiaRal++   +L+LDeatsaLDneseR vqaaL++++k        gRtt+ iahRL+ti+++D+i v+  G+++e+Gth+ L++++G+Y +L + q
  MMETSP1137-20121227|8131_1 462 LLALLSVQTGAQQLGLIGQNISpivKARQAAVKVLRTIERMPTIDafsTEGNTLTQVRGEIEVKDVYFAYPSApDVQVCNGYSLHVPAGQVVALCGQSGSGKSTIINLVERFYDPHRGAVHFDGVDVRTLNVSWLRQQIGLVGQEPXLFVGTVAENIAYGKXXGCDAxgDRXGGRXXPTRTXSSXXXCXSXYXTQVGXXGXKLSGGQKQRVAIARALVRKPAVLLLDEATSALDNESERIVQAALDEIIKeqkkltgrGRTTITIAHRLTTIRNSDKIAVVHRGQVLEEGTHNALMEKHGVYFELVEAQ 770
                 55666666666666666555441114444566666667777666622234467889***************97599*************************************************************************************97665511555566667788888999999*********************************************************9853333333379******************************************9998766 PP

>> TIGR01846  type_I_sec_HlyB: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.0     0.024       1.7     269     388 ..     233     346 ..     183     354 .. 0.73
   2 !  222.6   0.2   2.8e-68   1.9e-66     427     693 ..     492     771 ..     476     772 .. 0.86

  Alignments for each domain:
  == domain 1    score: 4.6 bits;  conditional E-value: 0.024
   TIGR01846 269 flavmffyspkltlvvlvslviylllsvivspilrkrvedkfeksaeaqsflvesvtgietikasavepqfkrrWerqlaayvaasfkvtklgnlasqaieliqkltaalllwfGaklvl 388
                  l++ f+y p + +vv+ ++++ +     +  + ++  ++  +  aea     e++++++ti + ++e++  + +e  l +   a+  +  lg   + a+++     a ++l+fGa l+ 
  MMETSP1137-20121227|8131_1 233 CLGIAFYYNPWVSFVVVATFPVVMGAAGLMNHVQQNSTKNIQAAYAEAGGRANEALSSMRTIACFSLEERTAKLYESGLKRAEVAAVWAAVLG---GFALSV---FMASMNLMFGAGLLF 346
                 58999**************9997766655555555555555666688888899********************99999876554444444443...333332...334455555555555 PP

  == domain 2    score: 222.6 bits;  conditional E-value: 2.8e-68
   TIGR01846 427 alerlGdildsPt.eassagkaalpelkGaiefenirfryked.spevlsnlsldikaGeviGivGpsGsGkstltkllqrlyvPekGrvlvdgvdlaladPawlrrqvgvvlqenvlfsrsirdnialakPa.iseekviaaaklaG..ahdfiselkqGyetevgekGaalsGGqrqrialaralvanPrilildeatsaldyeseavimrnlreic........kgrtviiiahrlstvraadrilvlekGkivesGkheellakeglyaklyqqqs 693
                 a++ l +i   Pt +a s+   +l++++G+ie++++ f y      +v +  sl+++aG+v+ + G+sGsGkst+  l+ r+y P++G v  dgvd+  ++ +wlr+q+g+v qe  lf +++++nia +k    +    +   +     +          y t+vg  G +lsGGq+qr+a+aralv +P +l+ldeatsald ese++++  l+ei         +grt i+iahrl+t+r++d+i v+++G+++e+G+h+ l++k+g y +l + qs
  MMETSP1137-20121227|8131_1 492 AVKVLRTIERMPTiDAFSTEGNTLTQVRGEIEVKDVYFAYPSApDVQVCNGYSLHVPAGQVVALCGQSGSGKSTIINLVERFYDPHRGAVHFDGVDVRTLNVSWLRQQIGLVGQEPXLFVGTVAENIAYGKXXgCDAXGDRXGGRXXPtrTXSSXXXCXSXYXTQVGXXGXKLSGGQKQRVAIARALVRKPAVLLLDEATSALDNESERIVQAALDEIIkeqkkltgRGRTTITIAHRLTTIRNSDKIAVVHRGQVLEEGTHNALMEKHGVYFELVEAQS 771
                 4445555555555234445567899***************65415678999******************************************************************************99641444444555555540045556677899******************************************************99963333333369***********************************************9998 PP

>> TIGR03796  NHLM_micro_ABC1: NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.1   0.0   6.2e-05    0.0043     221     354 ..     169     303 ..     137     354 .. 0.84
   2 !  210.3   0.2   1.4e-64   9.8e-63     466     709 ..     510     767 ..     474     768 .. 0.86

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 6.2e-05
   TIGR03796 221 leiklavassarflwhilrlPveffaqRaageiasRvqln.dkvaellsgqlattvldlvlvvfyalvmllydlvlaliaialaainvlalqlvsrkrvdanrrlqqdagklagvaiaglqsietlkAsglesdf 354
                  ++++     +++++ i+r   ++f+    +e+a  + ++   + + l++++++   +  + +  + + + y+++++++++a+  + + a  l+++ ++++++++q+ ++ + g a ++l+s+ t+   +le+  
  MMETSP1137-20121227|8131_1 169 AKVRMMACYKKEYVKSIIRQDLSWFDTNNPSELAPGIGAAmSTIEDGLGNKVMQLFENSGTGLGCLGIAFYYNPWVSFVVVATFPVVMGAAGLMNHVQQNSTKNIQAAYAEAGGRANEALSSMRTIACFSLEERT 303
                 5667777778899999*******************9988725688899999999999999999999************************************************************998888765 PP

  == domain 2    score: 210.3 bits;  conditional E-value: 1.4e-64
   TIGR03796 466 aeseekekLsGkvelrnvtfgy.saleapliedfslslkpGqrvAlvGgsGsGkstiaklvaGlyepwsGeilfDgkpreeiprevlanslalvdqdivlfegtvrdnltlwdetipeedlvrA...akDAaihdvilarpggyeaelaegganlsGGqrqRleiARaLvknPsiLilDEatsaLDaetEkaid..........enlrrRgctciivaHRLstiRdcdeiivlerGkvverGtHeellakegaYarLi 709
                 +e ++ ++++G++e+++v f+y sa + ++ +++sl++  Gq vAl G+sGsGksti  lv  +y+p +G + fDg++ ++++ + l++ + lv q+  lf gtv +n++       ++   r            +       y +++   g  lsGGq+qR+ iARaLv++P++L+lDEatsaLD e E++++          ++l  Rg t+i +aHRL tiR++d+i v+ rG+v+e GtH+ l++k+g+Y +L+
  MMETSP1137-20121227|8131_1 510 TEGNTLTQVRGEIEVKDVYFAYpSAPDVQVCNGYSLHVPAGQVVALCGQSGSGKSTIINLVERFYDPHRGAVHFDGVDVRTLNVSWLRQQIGLVGQEPXLFVGTVAENIAYGKXXGCDAXGDRXggrXXPTRTXSSXXXCXSXYXTQVGXXGXKLSGGQKQRVAIARALVRKPAVLLLDEATSALDNESERIVQaaldeiikeqKKLTGRGRTTITIAHRLTTIRNSDKIAVVHRGQVLEEGTHNALMEKHGVYFELV 767
                 334444899*************55568899********************************************************************************98877666554443111455667778888999*************************************************997222111111134567***********************************************98 PP

>> TIGR03797  NHLM_micro_ABC2: NHLM bacteriocin system ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.5   0.1   0.00047     0.033     182     357 ..     152     324 ..      79     362 .. 0.80
   2 !  211.4   1.0   7.4e-65   5.2e-63     414     685 ..     488     770 ..     457     771 .. 0.82

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 0.00047
   TIGR03797 182 llaaalgallfqlaqslavlRletavdaslqaavwdrLLrlpasfFreysagdLasra.mgvsqirrllsgatlkallssifallnlvlllvyslklalvavllalvaiavtlvlgllqvrkerkllelegklsgltvqlingisKlrvagaeerafaawakefseqrklelkaqri 357
                  +a+ +g+ +++ a ++a +R+++  + +        ++r   s+F + + ++La  +  ++s+i+  l++++++ +  s  +l  l++ ++y+  ++ v v+   v+++   ++  +q + ++++++  ++  g + + ++++  +   + eer+   +    ++++  ++ a+ +
  MMETSP1137-20121227|8131_1 152 GVALWFGTGIYMGATDIAKVRMMACYKKEYVK----SIIRQDLSWFDTNNPSELAPGIgAAMSTIEDGLGNKVMQLFENSGTGLGCLGIAFYYNPWVSFVVVATFPVVMGAAGLMNHVQQNSTKNIQAAYAEAGGRANEALSSMRTIACFSLEERTAKLYESGLKRAEVAAVWAAVL 324
                 33445677788888888888888777766554....456888899*********988736899********************************************************************9999999999999999998889888877777766665555554444 PP

  == domain 2    score: 211.4 bits;  conditional E-value: 7.4e-65
   TIGR03797 414 tlievlavvplyerakPileaepEvdeekvdpgkLsGaievdrvtFrYekd.gplvLddvslkiepGefvaivGaSGsGKStllrlLLgFekPesGsvlyDGqdlekldvqavRrqlGvVLQngrllsgsileniaggasltldeaweaa..rm..agleeDikamPmglhTvisegggtlSGGQrQRlliAralvrkPrillfDEATSALDNrtQaiVseslekl.....kv.....tRiviAHRLSTirnadrilvleeGrvveqGsyeeLlakeGlfaelarRQ 685
                 +  ++++v+ + er+  i +  +E      +  +++G+iev+ v F+Y +    +v +  sl++ +G+ va+ G+SGsGKSt++ l+  F  P+ G+v++DG d+++l+v+ +R+q+G V Q+  l+ g++ enia g+    d+  +    r   +              T +   g +lSGGQ+QR+ iAralvrkP +ll+DEATSALDN++ +iV ++l+++     k      t i iAHRL Tirn+d+i v++ G+v e+G+++ L++k+G++ el++ Q
  MMETSP1137-20121227|8131_1 488 ARQAAVKVLRTIERMPTIDAFSTE----GNTLTQVRGEIEVKDVYFAYPSApDVQVCNGYSLHVPAGQVVALCGQSGSGKSTIINLVERFYDPHRGAVHFDGVDVRTLNVSWLRQQIGLVGQEPXLFVGTVAENIAYGKXXGCDAXGDRXggRXxpTRTXSSXXXCXSXYXTQVGXXGXKLSGGQKQRVAIARALVRKPAVLLLDEATSALDNESERIVQAALDEIikeqkKLtgrgrTTITIAHRLTTIRNSDKIAVVHRGQVLEEGTHNALMEKHGVYFELVEAQ 770
                 444555555555555433333333....33345789************654156899***********************************************************************************9999876543112200334444555666788**************************************************9987633333112233378********************************************988 PP

>> TIGR03375  type_I_sec_LssB: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.0     0.046       3.2     281     359 ..     236     314 ..     232     354 .. 0.84
   2 !  191.6   0.1   6.7e-59   4.6e-57     434     691 ..     490     759 ..     474     762 .. 0.85

  Alignments for each domain:
  == domain 1    score: 3.7 bits;  conditional E-value: 0.046
   TIGR03375 281 vialiggplvlvplvavplvllvglllqkplsklaeeslresaqknallveslegletikalnaesrlqkkWeqvvaal 359
                 + ++  +++ +v+++++p+v+ ++ l+ +  ++++++ +++ a+  +   e+l+ + ti   + e+r+ k +e+ ++  
  MMETSP1137-20121227|8131_1 236 IAFYYNPWVSFVVVATFPVVMGAAGLMNHVQQNSTKNIQAAYAEAGGRANEALSSMRTIACFSLEERTAKLYESGLKRA 314
                 5566778999****************999999999999999999999******************99999999876655 PP

  == domain 2    score: 191.6 bits;  conditional E-value: 6.7e-59
   TIGR03375 434 ktalesldelmklpvereeekrllsreklkGeielknvsfkYpeeek.aaLknvslkikpGekvaiiGriGsGKstllklllglyepteGsvlldgvdirqidpadlrrnigyvpqdvtLfyGtlrdNialgapaaedeellraaelaGvtefvkk...hpkGldlqigerGesLSgGQrqavalaRallkdppillLDEPtsalDnsseekllerLkella........dkTlvlvtHrtslLelvdriivldkGrivadGpkdevlea 691
                 ++a++ l ++ ++p+    +++  + ++++Geie+k+v f+Yp + + ++ +  sl++ +G+ va+ G+ GsGKst+ +l+ ++y+p++G+v +dgvd+r+++++ lr++ig+v q++ Lf Gt+ +Nia+g+    d+   r   +   t+  ++     + + +q+g  G +LSgGQ+q va+aRal+++p++llLDE tsalDn+se+ +  +L e+++        ++T + ++Hr + ++  d+i v+ +G+++ +G++++++e+
  MMETSP1137-20121227|8131_1 490 QAAVKVLRTIERMPTIDAFSTEGNTLTQVRGEIEVKDVYFAYPSAPDvQVCNGYSLHVPAGQVVALCGQSGSGKSTIINLVERFYDPHRGAVHFDGVDVRTLNVSWLRQQIGLVGQEPXLFVGTVAENIAYGKXXGCDAXGDRXGGRXXPTRTXSSxxxCXSXYXTQVGXXGXKLSGGQKQRVAIARALVRKPAVLLLDEATSALDNESERIVQAALDEIIKeqkkltgrGRTTITIAHRLTTIRNSDKIAVVHRGQVLEEGTHNALMEK 759
                 4455555556566666666666677889**************998661667889********************************************************************************8888777666655555554444111567899**********************************************999998877642211112468*********************************99987 PP

>> TIGR01192  chvA: glucan exporter ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  182.8   0.1   3.4e-56   2.3e-54     323     570 ..     510     770 ..     474     785 .. 0.86

  Alignments for each domain:
  == domain 1    score: 182.8 bits;  conditional E-value: 3.4e-56
   TIGR01192 323 adarelknvkgavefrdisfefans..sqgvrdvsfeakagqtvaivgptgagkttlinllqrvydpksgqilidgvdiatvtreslrksiatvfqdagllnrsirenirlgredatdeevvea...akaaaasdfiekrlkgydtlvgergnrlsggerqrlaiarailknapilvldeatsaldvetearvkdaidalrkn........rttfiiahrlstvreadlvlfldqgrliekgsfdeliqkdgrfakllras 570
                 ++ + l++v+g++e +d+ f ++ +   q     s+++ agq va+ g +g+gk+t+inl++r ydp+ g +  dgvd+ t++   lr+ i  v q+  l+  ++ eni  g+   +d+           + +          y t+vg  g +lsgg++qr+aiara+++   +l+ldeatsald e+e  v++a+d + k+        rtt+ iahrl+t+r++d +  + +g+++e g+ + l++k+g + +l+ a 
  MMETSP1137-20121227|8131_1 510 TEGNTLTQVRGEIEVKDVYFAYPSApdVQVCNGYSLHVPAGQVVALCGQSGSGKSTIINLVERFYDPHRGAVHFDGVDVRTLNVSWLRQQIGLVGQEPXLFVGTVAENIAYGKXXGCDAXGDRXggrXXPTRTXSSXXXCXSXYXTQVGXXGXKLSGGQKQRVAIARALVRKPAVLLLDEATSALDNESERIVQAALDEIIKEqkkltgrgRTTITIAHRLTTIRNSDKIAVVHRGQVLEEGTHNALMEKHGVYFELVEAQ 770
                 5667899**************9876325788889*******************************************************************************987776544430003344444555667789*******************************************************98764344455559******************************************9998764 PP

>> TIGR02857  CydD: thiol reductant ABC exporter, CydD subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.6   0.2     0.005      0.35      17     237 ..     116     332 ..     102     353 .. 0.71
   2 !  173.5   0.0   2.6e-53   1.8e-51     290     528 ..     488     741 ..     485     742 .. 0.83

  Alignments for each domain:
  == domain 1    score: 7.6 bits;  conditional E-value: 0.005
   TIGR02857  17 llliaqAallarvvssliaagealaelltalaalalvlllRallawlkeaaaaraaaevksqlrerllekvaalGpavlqkkksgelatlllegvdalddYfarylpqlvlavivplvilaavltadwisalillltlPlipiFmiLiGsaaqaaarkqlaalsrLsghfldlvrglptLklfgrakaeaaaikriseeyrerTmevLriAfLSslvLell 237
                 l+l+ +A  + ++ +     + +++el+ ++++l++v ++    + +   a + a +++ +  +++ ++ + ++  ++  +++ +ela  +  +++ ++d +   + ql+    + l  l + +  +     +++ t+P++     L+ +  q+ +++ +aa ++ +g   + ++ + t++ f  ++++a+ + ++   ++++ ++    A L +++L ++
  MMETSP1137-20121227|8131_1 116 LVLVLFAGSIESAGQAS-NGAFDQDELTRQAVLLVVVGVALWFGTGIYMGATDIAKVRMMACYKKEYVKSIIRQDLSWFDTNNPSELAPGIGAAMSTIEDGLGNKVMQLFENSGTGLGCLGIAFYYNPWVSFVVVATFPVVMGAAGLMNHVQQNSTKNIQAAYAEAGGRANEALSSMRTIACFSLEERTAK-LYES--GLKRAEVAAVWAAVLGGFALSVF 332
                 55555555554443333.4444555666665555555554444444444555566667777778888888888888888888889999999999999988888888888888888887777777777667788999************************************************9987764.4443..45566666666777777777655 PP

  == domain 2    score: 173.5 bits;  conditional E-value: 2.6e-53
   TIGR02857 290 gvaaaealvevldaeeqpeaekapltaaass..slelenvsvayegrk..palkevsltvepgelvalvGaSGaGKstllklllgfvepteGailvngaelaeldadswrkqiawvpQkPllfegtvaenirlarkdaseaevkealer...agldelvkalpqgleteiGergagLSgGqrqRlaLArallrdapllllDEPtahLDaeteaevlealrelae........grtvllvaHrlalaeladkivv 528
                 +++aa ++ +++++ + + a +++ ++  +   ++e+++v +ay+ +   ++ ++ sl+v++g++val+G+SG+GKst+++l+ +f +p++Ga++ +g++++ l+ + +r+qi+ v+Q+P lf gtvaeni+ ++    +a  ++   r   +   +      + + t++G  g +LSgGq+qR+a+Aral+r+  +lllDE t++LD+e+e  v++al+e+++        grt++ +aHrl ++++ dki v
  MMETSP1137-20121227|8131_1 488 ARQAAVKVLRTIERMPTIDAFSTEGNTLTQVrgEIEVKDVYFAYPSAPdvQVCNGYSLHVPAGQVVALCGQSGSGKSTIINLVERFYDPHRGAVHFDGVDVRTLNVSWLRQQIGLVGQEPXLFVGTVAENIAYGKXXGCDAXGDRXGGRxxpTRTXSSXXXCXSXYXTQVGXXGXKLSGGQKQRVAIARALVRKPAVLLLDEATSALDNESERIVQAALDEIIKeqkkltgrGRTTITIAHRLTTIRNSDKIAV 741
                 566666777777744444444444333333346***********877668899******************************************************99**************************988888766655441115566666778889*************************************************99999876532233333389*****************976 PP

>> TIGR01842  type_I_sec_PrtD: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.2   0.1    0.0006     0.042     133     246 ..     234     343 ..     222     359 .. 0.80
   2 !  149.5   0.3   3.7e-46   2.5e-44     285     542 ..     486     758 ..     457     760 .. 0.83

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 0.0006
   TIGR01842 133 llvvfllhpylGllalvgavvlvalallneaatkkklkeateasikanklldsalrnaeviealgmlkeltkrWeklkskalsaqsaasdragalsalskvlRivlqslvlglG 246
                 l + f  +p++ ++++++  v+++ a l ++++++++k+ + a  +a   +++al     i  +++ ++  k    l+++ l+  ++a+  a++l++++ ++ ++   l+ g G
  MMETSP1137-20121227|8131_1 234 LGIAFYYNPWVSFVVVATFPVVMGAAGLMNHVQQNSTKNIQAAYAEAGGRANEALSSMRTIACFSLEERTAK----LYESGLKRAEVAAVWAAVLGGFALSVFMASMNLMFGAG 343
                 6799********************999999999999999999999999999999988888888777666555....55666777777777777777777766666666666655 PP

  == domain 2    score: 149.5 bits;  conditional E-value: 3.7e-46
   TIGR01842 285 saarkaykrlkelleelp....areealklPepegelevenvslvppeekk.ktlkgisfalkaGealaiiGpsgsGkssLarllvGvwlpasGsvrlDgadlkqwdretlGksiGYlPqdveLfeGtvaeniaRfee...nadaekvieaaklagvhelilrlpkGYdteigegGaaLsgGqrqRiaLaRalygdPklvvLDePnanLDeeGeqalakalkel....ka...rkitvvvithrpsllelvdkilvlkdGalkafGereevlk 542
                 ++ar+a  ++ + +e++p    +++e  +l +++ge+ev++v+++ p++   ++ +g s+ + aG+++a+ G+sgsGks++  l+   + p++G v++Dg+d++  +   l ++iG + q+  Lf Gtvaenia  +    +a  ++       +          + Y t++g  G +LsgGq+qR+a+aRal ++P++++LDe  + LD+e e  + +al e+    k+   r++t+++i+hr + ++  dki+v++ G++ + G+++ +++
  MMETSP1137-20121227|8131_1 486 VKARQAAVKVLRTIERMPtidaFSTEGNTLTQVRGEIEVKDVYFAYPSAPDvQVCNGYSLHVPAGQVVALCGQSGSGKSTIINLVERFYDPHRGAVHFDGVDVRTLNVSWLRQQIGLVGQEPXLFVGTVAENIAYGKXxgcDAXGDRXGGRXXPTRTXSSXXXCXSXYXTQVGXXGXKLSGGQKQRVAIARALVRKPAVLLLDEATSALDNESERIVQAALDEIikeqKKltgRGRTTITIAHRLTTIRNSDKIAVVHRGQVLEEGTHNALME 758
                 445555544444444444111145566889**************9887755278899*****************************************************************************7554211455566666666677788889999*************************************************8887777554211133444789******************************9988776 PP

>> TIGR01193  bacteriocin_ABC: ABC-type bacteriocin transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0         4   2.8e+02     234     281 ..     180     228 ..     172     306 .. 0.68
   2 !  156.2   0.0   3.9e-48   2.7e-46     460     707 ..     510     768 ..     480     769 .. 0.84

  Alignments for each domain:
  == domain 1    score: -2.5 bits;  conditional E-value: 4
   TIGR01193 234 syikhlfelPmsffstrrvGeivsrftda.skiidalastilslfldls 281
                 +y+k ++   +s+f t +  e+      a s+i d l+  ++ lf +  
  MMETSP1137-20121227|8131_1 180 EYVKSIIRQDLSWFDTNNPSELAPGIGAAmSTIEDGLGNKVMQLFENSG 228
                 69999999999*****999999998876626677899999999997654 PP

  == domain 2    score: 156.2 bits;  conditional E-value: 3.9e-48
   TIGR01193 460 ekkkltelenlngdievndvsysyGygs..evledislkikknekitlvGlsGsGkstlakllvkffqaesGeillngkslkdidkhelrqlinylPqePfifsGsilenlllgakenvsq..eeikkaveiaeikddieklplGyqtelseeassisgGqkqrlalarallsdskvlildestsnldlltek.......kivenllklk..dktiifvahrlsvakksdkiivldeGkiieqGshkellkenGfyaslih 707
                 +  + ++l++++g+iev+dv + y  +   +v +  sl++ + ++++l G sGsGkst++ l+ +f++++ G ++++g++++ ++ + lrq i  + qeP +f G++ en+  g   + +   ++       +   +        y t++   + ++sgGqkqr+a+aral+ +  vl+lde+ts ld   e+        i+++  kl+   +t i +ahrl+  ++sdki v+++G+++e+G+h+ l++++G y +l++
  MMETSP1137-20121227|8131_1 510 T--EGNTLTQVRGEIEVKDVYFAYPSAPdvQVCNGYSLHVPAGQVVALCGQSGSGKSTIINLVERFYDPHRGAVHFDGVDVRTLNVSWLRQQIGLVGQEPXLFVGTVAENIAYGKXXGCDAxgDRXGGRXXPTRTXSSXXXCXSXYXTQVGXXGXKLSGGQKQRVAIARALVRKPAVLLLDEATSALDNESERivqaaldEIIKEQKKLTgrGRTTITIAHRLTTIRNSDKIAVVHRGQVLEEGTHNALMEKHGVYFELVE 768
                 3..33688999*************98751267899********************************************************************************99887611455555555666777888999********************************************988872222222344444444311469*****************************************99986 PP

>> TIGR02868  CydC: thiol reductant ABC exporter, CydC subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  136.2   0.0   4.1e-42   2.9e-40     272     530 .]     456     730 ..     434     730 .. 0.78

  Alignments for each domain:
  == domain 1    score: 136.2 bits;  conditional E-value: 4.1e-42
   TIGR02868 272 alAvlvLlp.LaafealaalpaA...aqqltrvraaaeRieevldakvevaeasapaaeaaasekptlelrdlsvsypgaee..vlkgvsldlepGervavvGasGaGKstLlallaglldplkGevtldgvsvaslsesevrrvvsvlaqdaHlFdttvreNlrlarpda...tdeellaaLervgLadwlraLpdGldtklgeggarlSGGerqRlalARaLladapvllLDEPtehLDaeteeelledLl...aaeegrt.....vvlvthrl 530
                 ++A  vLl+ L++    + l      +  + ++r+aa ++  +++  +  ++ s + + ++++ + ++e++d+ ++yp a+   v +g sl++++G+ va+ G+sG+GKst+++l+ ++ dp++G v  dgv+v +l+ s +r+ + ++ q++ lF  tv eN+  ++  +    ++        ++  +      + + t++g  g  lSGG++qR+a+ARaL+ +  vllLDE t  LD e e+ + ++L    + +++ t     ++ ++hrl
  MMETSP1137-20121227|8131_1 456 WIASSVLLAlLSVQTGAQQLGLIgqnISPIVKARQAAVKVLRTIERMPTIDAFSTEGN-TLTQVRGEIEVKDVYFAYPSAPDvqVCNGYSLHVPAGQVVALCGQSGSGKSTIINLVERFYDPHRGAVHFDGVDVRTLNVSWLRQQIGLVGQEPXLFVGTVAENIAYGKXXGcdaXGDRXGGRXXPTRTXSSXXXCXSXYXTQVGXXGXKLSGGQKQRVAIARALVRKPAVLLLDEATSALDNESERIVQAALDeiiKEQKKLTgrgrtTITIAHRL 730
                 5555555541455555555555400055555666666666666666644444444444.44445889************998789***********************************************************************************8661115556666677788888888899***********************************************997665555411133322224444488888875 PP

>> TIGR00972  3a0107s01c2: phosphate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  118.7   0.0   7.8e-37   5.4e-35      13     233 ..     536     759 ..     521     762 .. 0.79

  Alignments for each domain:
  == domain 1    score: 118.7 bits;  conditional E-value: 7.8e-37
   TIGR00972  13 ekealkdvnleikknkvtaliGpsGcGkstllrslnrlndlveevrieGkvllegkdiydkkldvvelrkkvGmvfqkpnpfpmsiydnvayglrlkg..ikdkkeldei.veesLkkaalwdevkdklkksalsLsGGqqqrlciaralavePevlLlDePtsaLDpiateki....eeliqeLkkk....ytivivthnmqqaarvsdktaffleGelveegeteqifek 233
                 + ++ +  +l++++ +v+al G sG+Gkst++  + r+ d       +G+v+++g d+    l+v  lr+++G+v q+p  f  ++ +n+ayg         d+   +    ++  +         +++   + +LsGGq+qr++iaral  +P vlLlDe tsaLD ++ + +    +e+i+e kk      t + + h +  ++r sdk+a++++G+++eeg+ + ++ek
  MMETSP1137-20121227|8131_1 536 DVQVCNGYSLHVPAGQVVALCGQSGSGKSTIINLVERFYDPH-----RGAVHFDGVDVRT--LNVSWLRQQIGLVGQEPXLFVGTVAENIAYGKXXGCdaXGDRXGGRXXpTRTXSSXXXCXSXYXTQVGXXGXKLSGGQKQRVAIARALVRKPAVLLLDEATSALDNESERIVqaalDEIIKEQKKLtgrgRTTITIAHRLT-TIRNSDKIAVVHRGQVLEEGTHNALMEK 759
                 457788999******************************998.....8*********975..6999***************************65443113344433333133334445566788999***************************************988766511115666665543223458899999996.7899*****************9998876 PP

>> TIGR03864  PQQ_ABC_ATP: ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  105.7   0.4   7.5e-33   5.2e-31       2     225 ..     522     762 ..     521     769 .. 0.78

  Alignments for each domain:
  == domain 1    score: 105.7 bits;  conditional E-value: 7.5e-33
   TIGR03864   2 leveglsfaygkr...ralddvsltvakgefvaLLGpnGaGkstLfslltrLyeakegeikvaGldlrrapkeala.rlGvvfqqstlDldlsveqnlryh....aaLhG..lsraeaeerieeala..rlglaeraeekvreLnGGhrrrveiarallhePklLLlDeatvGLDiesraalveevrelvree......glsvLWathlvdeveaedrlvvlhkGkvlaqGaaaelaaeada 225
                 +ev+++ fay +    ++ ++ sl+v+ g++vaL G  G+Gkst+++l+ r y+ ++g ++  G+d+r+ +++ l+ ++G+v q++ l +  +v++n+ y      +  G   + +   +r  +           +      +L+GG+++rv iaral+ +P++LLlDeat  LD es + +++++ e+++e+      g + +   h +  ++++d++ v+h+G+vl +G+ ++l++++++
  MMETSP1137-20121227|8131_1 522 IEVKDVYFAYPSApdvQVCNGYSLHVPAGQVVALCGQSGSGKSTIINLVERFYDPHRGAVHFDGVDVRTLNVSWLRqQIGLVGQEPXLFVG-TVAENIAYGkxxgCDAXGdrXGGRXXPTRTXSSXXxcXSXYXTQVGXXGXKLSGGQKQRVAIARALVRKPAVLLLDEATSALDNESERIVQAALDEIIKEQkkltgrGRTTITIAHRLTTIRNSDKIAVVHRGQVLEEGTHNALMEKHGV 762
                 6888999999764222678899*************************************************9999637**********875.9******96221112222113333334444333330023344455556689***********************************99888877777665421111145677888*****************************998875 PP

>> TIGR02314  ABC_MetN: D-methionine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  100.7   0.5   2.5e-31   1.7e-29      14     227 ..     533     755 ..     522     763 .. 0.78

  Alignments for each domain:
  == domain 1    score: 100.7 bits;  conditional E-value: 2.5e-31
   TIGR02314  14 gdkkikaldnvslfvpkgqifgvigasgagkstlircvnllekptsgavivdgkdlttlsnaelvkarrqigmifqhfnllssrtvfgnvalplelentp.kek.......ikrkvtellalvglsdkkdsypsnlsggqkqrvaiaralasepkvllcdeatsaldpattqsilellkeinrr...l...gltillithemdvvkricdevavidkgeliekgtvse 227
                 +  +++  +  sl+vp+gq++ + g sg+gkst+i  v+ +  p  gav  dg+d+ tl+ + l   r+qig++ q   l+   tv +n+a        +  ++        ++  +   +      +       lsggqkqrvaiaral  +p vll deatsald  + + +   l ei ++   l   g t + i+h +  +++  d++av+++g+++e+gt + 
  MMETSP1137-20121227|8131_1 533 SAPDVQVCNGYSLHVPAGQVVALCGQSGSGKSTIINLVERFYDPHRGAVHFDGVDVRTLNVSWL---RQQIGLVGQEPXLFV-GTVAENIAYGKXXGCDAxGDRxggrxxpTRTXSSXXXCXSXYXTQVGXXGXKLSGGQKQRVAIARALVRKPAVLLLDEATSALDNESERIVQAALDEIIKEqkkLtgrGRTTITIAHRLTTIRN-SDKIAVVHRGQVLEEGTHNA 755
                 55678899999************************************************87665...99*******988775.69******98765443312330111111222333344444555666677889*********************************99988877777764421113333568999*****99865.8**************99765 PP

>> TIGR01186  proV: glycine betaine/L-proline transport ATP binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  100.6   0.0     3e-31   2.1e-29      10     218 ..     541     757 ..     536     764 .. 0.80

  Alignments for each domain:
  == domain 1    score: 100.6 bits;  conditional E-value: 3e-31
   TIGR01186  10 ndvdleieeGeiiviiGlsGsGkstlvrllnrliePtaGkilidGediaeisdaelrevrrkkiamviqkialfPhmtildnislglellkideqer....kekalealklvdl.eeyedry...PdelsGGmqqrvGlaralaaePdlllmdeafsaldPlirdelq...delvklqkkl...qktivfithdldealrlgdrivilkaGeivqvGtPdeil 218
                 n  +l++  G+++ + G sGsGkst++ l++r+ +P +G ++ dG+d+  ++   l    r++i++v q+  lf   t+ +ni++g      +  +r       ++           y  +      +lsGG++qrv +aral  +P +ll+dea sald      +q   de++k qkkl    +t + i+h l  ++r +d+i++++ G+++  Gt + ++
  MMETSP1137-20121227|8131_1 541 NGYSLHVPAGQVVALCGQSGSGKSTIINLVERFYDPHRGAVHFDGVDVRTLNVSWL----RQQIGLVGQEPXLFV-GTVAENIAYGKXXGCDAXGDRxggrXXPTRTXSSXXXCxSXYXTQVgxxGXKLSGGQKQRVAIARALVRKPAVLLLDEATSALDNESERIVQaalDEIIKEQKKLtgrGRTTITIAHRLT-TIRNSDKIAVVHRGQVLEEGTHNALM 757
                 667999************************************************99....9************96.69*******9765433333431110333444333333346676664221579********************************85544444333788888888633369*********6.79******************988765 PP

>> TIGR00957  MRP_assoc_pro: multi drug resistance-associated protein (MRP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0      0.58        41    1014    1089 ..     147     227 ..     124     256 .. 0.69
   2 !   98.2   0.0   7.6e-31   5.3e-29    1281    1517 ..     518     767 ..     500     771 .. 0.84

  Alignments for each domain:
  == domain 1    score: -0.9 bits;  conditional E-value: 0.58
   TIGR00957 1014 lgilqgiav.lgysmavsiggilasr...vlhldllhnvlrspmsffertpsgnlvnrfskeldvvdsvla.evikmllgs 1089
                  l ++ g+a+ +g  + + +  i   r   + +++ +++++r  +s+f++    +l   +   + ++++ l  +v++++ +s
  MMETSP1137-20121227|8131_1  147 LLVVVGVALwFGTGIYMGATDIAKVRmmaCYKKEYVKSIIRQDLSWFDTNNPSELAPGIGAAMSTIEDGLGnKVMQLFENS 227 
                  44445544325555555555555555111678999**************99999999999999998776651566666555 PP

  == domain 2    score: 98.2 bits;  conditional E-value: 7.6e-31
   TIGR00957 1281 ksgrvefrnyslryredldl.vlrdlnvtieggekvgivgrtgagkssltlglfrinesaegeiiidglniakiglhdlrfkltiipqdpvlfsgslrmnldpfsqysdeevw...lalelahlkdfvsal..pdkldfecaeggenlsvgqrqlvclarallrktkilvldeataavdletdnliqst....irtqfe....dctvltiahrlntimdytrvlvldkgevaefdapsellqqrgifysma 1517
                   +g++e ++  + y    d+ v +  ++++  g+ v + g++g+gks++   + r  +  +g +  dg+++  + +  lr ++ ++ q+p lf g++  n+  +++    +             ++  s     +    +    g +ls gq+q v +aral+rk  +l+ldeat+a+d e++ ++q++    i+ q +      t +tiahrl ti +  ++ v+ +g+v e ++   l+++ g+++ + 
  MMETSP1137-20121227|8131_1  518 VRGEIEVKDVYFAYPSAPDVqVCNGYSLHVPAGQVVALCGQSGSGKSTIINLVERFYDPHRGAVHFDGVDVRTLNVSWLRQQIGLVGQEPXLFVGTVAENIA-YGKXXGCDAXgdrXGGRXXPTRTXSSXXxcXSXYXTQVGXXGXKLSGGQKQRVAIARALVRKPAVLLLDEATSALDNESERIVQAAldeiIKEQKKltgrGRTTITIAHRLTTIRNSDKIAVVHRGQVLEEGTHNALMEKHGVYFELV 767 
                  479***********999997477889**************************************************************************96.55555544441113334444555555541145566788888*******************************************973332455543212245899***************************************9875 PP

>> TIGR02315  ABC_phnC: phosphonate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.6   0.0   4.5e-30   3.1e-28       2     235 ..     522     758 ..     521     762 .. 0.83

  Alignments for each domain:
  == domain 1    score: 96.6 bits;  conditional E-value: 4.5e-30
   TIGR02315   2 levenlskvypn..gkqalknvnleikkGelvaviGlsGaGkstllrsinrlveissgsillegkevtklkkkelrklrkkigmifqeynlierltvlenvLsgrlgakstlksllglfseedkekAlelLervglaelaakradqLsGGqqqRvaiaRalaqqpklilaDEPiasLDpksskqvmdllkrinkek......gitvivnlHqvdlakkyadrivglkageivfdgasseldd 235
                 +ev+++   yp+  + q+ +  +l++  G++va+ G+sG+Gkst++  ++r+ ++++g++ ++g +v++l+   +  lr++ig++ qe  l    tv en+  g+    ++     g      ++             +      +LsGGq+qRvaiaRal+++p+++l DE +++LD++s ++v  +l +i ke+      g t+i   H++   +  +d+i  ++ g+++ +g+ ++l +
  MMETSP1137-20121227|8131_1 522 IEVKDVYFAYPSapDVQVCNGYSLHVPAGQVVALCGQSGSGKSTIINLVERFYDPHRGAVHFDGVDVRTLN---VSWLRQQIGLVGQEPXLFV-GTVAENIAYGKXXGCDAXGDRXGGRXXPTRTXSSXXXCXSXYXTQVGXXGXKLSGGQKQRVAIARALVRKPAVLLLDEATSALDNESERIVQAALDEIIKEQkkltgrGRTTITIAHRLTTIR-NSDKIAVVHRGQVLEEGTHNALME 758
                 78999999998744689999***********************************************9665...667899********98875.689*******98777666655555444444455555555566777788899***********************************************9986333333567788888887765.589999999999999999888766 PP

>> TIGR02673  FtsE: cell division ATP-binding protein FtsE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.8   0.1   1.8e-29   1.2e-27       2     205 ..     522     738 ..     521     746 .. 0.76

  Alignments for each domain:
  == domain 1    score: 94.8 bits;  conditional E-value: 1.8e-29
   TIGR02673   2 ielekvskeya..agveaLkdvslkiekgeflfltGasGaGkttllklllgaekpsrGevevagedvarlrerelpllRrkigvvfqDfkllkdrtvlenvalalev....rgkk..eeeiqkrveevle..lvgledkakalpeelsgGeqqRvaiaRaivnkPelllaDePtGnlDdelserildll.......kelnkrGttvivathdeelvervkk 205
                 ie+++v+++y+   +v++ +  sl++ +g+++ l G+sG+Gk+t+++l+     p+rG+v+++g dv++l   +++ lR++ig+v q+  l+   tv+en+a          g++   +   +r  +           ++     +lsgG +qRvaiaRa+v+kP++ll De t  lD+e ++ + + l       k+l+ rG t i  +h  + +++++k
  MMETSP1137-20121227|8131_1 522 IEVKDVYFAYPsaPDVQVCNGYSLHVPAGQVVALCGQSGSGKSTIINLVERFYDPHRGAVHFDGVDVRTL---NVSWLRQQIGLVGQEPXLFV-GTVAENIAYGKXXgcdaXGDRxgGRXXPTRTXSSXXxcXSXYXTQVGXXGXKLSGGQKQRVAIARALVRKPAVLLLDEATSALDNESERIVQAALdeiikeqKKLTGRGRTTITIAHRLTTIRNSDK 738
                 7889999***955578999***********************************************9988...5899***********99876.69******9754311113322112333344333333003445677888999*********************************9877654443311111115566789999999999888877654 PP

>> TIGR00960  3a0501s02: type II secretory pathway family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.5   0.1   1.1e-29     8e-28       2     206 ..     522     738 ..     521     747 .. 0.77

  Alignments for each domain:
  == domain 1    score: 95.5 bits;  conditional E-value: 1.1e-29
   TIGR00960   2 ikfeqvskaykgaael.aldnvtvkiekGelvflvGhsGaGkstllklilgiekpsaGkirvsgqdltklrdrevpflrrqiGivfqdfkllsdrtvydnvalalr....iiGvk..greieervsaalekv..GlkdkakalPvqlsgGeqqrvaiaravvnkPallladePtgnlddelsr.......dilelleevnraGttvlvathdenlveskrk 206
                 i++++v  ay++a ++   ++ +++++ G++v l G+sG+Gkst+++l+     p +G +++ g d+ +l   +v+ lr+qiG+v q+  l+   tv +n+a          G +  gr  ++r   +          +      +lsgG++qrvaiara+v+kPa+ll de t+ ld+e  r       +i++  +++  +G t +  +h  + + +  k
  MMETSP1137-20121227|8131_1 522 IEVKDVYFAYPSAPDVqVCNGYSLHVPAGQVVALCGQSGSGKSTIINLVERFYDPHRGAVHFDGVDVRTL---NVSWLRQQIGLVGQEPXLFV-GTVAENIAYGKXxgcdAXGDRxgGRXXPTRTXSSXXXCxsXYXTQVGXXGXKLSGGQKQRVAIARALVRKPAVLLLDEATSALDNESERivqaaldEIIKEQKKLTGRGRTTITIAHRLTTIRNSDK 738
                 7788899999998765156889********************************************9887...699************98876.69******9754111145543225666777766665541145667778899*********************************9987622222224444445566678888888888887766544 PP

>> TIGR01187  potA: polyamine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.4   0.3   2.2e-29   1.5e-27       1     191 [.     555     759 ..     555     767 .. 0.77

  Alignments for each domain:
  == domain 1    score: 94.4 bits;  conditional E-value: 2.2e-29
   TIGR01187   1 lLGpsGsGkttlLrllaGleeldsGkilldgedvt..evpaekrsvnvvfqsyaLfPhmtveenvafgLkmrkvpk......aeikervkeaLelvq..leefakrkpsqlsGGqrqrvalaravvkkPkiLLlDeplsaLDkkLrdqmqlelkal...qekl...GitvvlvthDqeealtmsdriavlrkGkiaqigepeeiyee 191
                 l G sGsGk+t++ l+  + ++  G + +dg+dv   +v+  ++++++v q+  Lf   tv+en+a+g                  +r             +       +lsGGq+qrva+ara+v kP +LLlDe+ saLD++    +q  l ++   q+kl   G t++ ++h     +  sd+iav+++G+++  g+ + + e+
  MMETSP1137-20121227|8131_1 555 LCGQSGSGKSTIINLVERFYDPHRGAVHFDGVDVRtlNVSWLRQQIGLVGQEPXLFV-GTVAENIAYGKXXGCDAXgdrxggRXXPTRTXSSXXXCXsxYXTQVGXXGXKLSGGQKQRVAIARALVRKPAVLLLDEATSALDNESERIVQAALDEIikeQKKLtgrGRTTITIAHRL-TTIRNSDKIAVVHRGQVLEEGTHNALMEK 759
                 579******************************962367778999***********7.59*******9654332221000002233444443333320123333345678*********************************9999999988776333555566689*******65.6899***************9999888765 PP

>> TIGR00968  3a0106s01: sulfate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.1   0.4   1.1e-28   7.9e-27      12     222 ..     536     760 ..     522     768 .. 0.77

  Alignments for each domain:
  == domain 1    score: 92.1 bits;  conditional E-value: 1.1e-28
   TIGR00968  12 dfqalddvdlevktGslvallGpsGsGkstllrviaGlekpdsGrilleGrdvtrvkvr..dreiGfvfqhyalfkhltvrdniafGleir......kkdkakikakveellelvqleklgd.......rypsqlsGGqrqrvalaralavepqvllldepfgaldakvrkelrawlrklhdevk.v.....ttvfvthdqeealevadrivvlekGkieqvgsaeevydep 222
                 d+q+ +  +l+v+ G++val G sGsGkst++ ++  + +p  G + ++G dv  ++v   +++iG+v q+  lf   tv +nia+G          +        +              +           +lsGGq+qrva+aral  +p vlllde  +ald +  + ++a l ++ +e k +     tt+ ++h    ++  +d+i+v+++G++ + g+ + ++++ 
  MMETSP1137-20121227|8131_1 536 DVQVCNGYSLHVPAGQVVALCGQSGSGKSTIINLVERFYDPHRGAVHFDGVDVRTLNVSwlRQQIGLVGQEPXLFVG-TVAENIAYGKXXGcdaxgdR-----XGGRXXPTRTXSSXXXCXSxyxtqvgXXGXKLSGGQKQRVAIARALVRKPAVLLLDEATSALDNESERIVQAALDEIIKEQKkLtgrgrTTITIAHRL-TTIRNSDKIAVVHRGQVLEEGTHNALMEKH 760
                 67899999*********************************************8776643389************86.9********88765444442.....22233333333333333330000000456679*********************************999999999987655432423333678888866.567889************999999888765 PP

>> TIGR01277  thiQ: thiamine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.3   0.1     2e-28   1.4e-26      16     208 ..     542     748 ..     522     752 .. 0.77

  Alignments for each domain:
  == domain 1    score: 91.3 bits;  conditional E-value: 2e-28
   TIGR01277  16 efdlsveaGervailGesGaGkstllnliaGflepasGeikvndkdhtrs..apyerpvsmlfqennlfahltvrqniglGlkpglklnavqke.....kvedvarqvGiady...lerlpeelsGGqrqrvalarclvrekpillldepfsaldpklreemlalvkkladekk......ltlllvthslsdaaaiasqvvvvedGkik 208
                  ++l v aG+ va+ G+sG+Gkst++nl+  f  p +G+++ +++d+ ++  +  ++ + ++ qe  lf   tv++ni+ G   g      +         +  +     + y   +     +lsGGq+qrva+ar lvr+  +lllde  sald+   + + a + ++ +e+k      +t + ++h+l  + +  ++++vv+ G++ 
  MMETSP1137-20121227|8131_1 542 GYSLHVPAGQVVALCGQSGSGKSTIINLVERFYDPHRGAVHFDGVDVRTLnvSWLRQQIGLVGQEPXLFVG-TVAENIAYGKXXGCDAXGDRXGgrxxpTRTXSSXXXCXSXYxtqVGXXGXKLSGGQKQRVAIARALVRKPAVLLLDEATSALDNESERIVQAALDEIIKEQKkltgrgRTTITIAHRLTTI-RNSDKIAVVHRGQVL 748
                 489****************************************999877611556899***********85.9********999988765543211111122223333444551015556789********************************98777666666666555432222227899*****9876.56799*******985 PP

>> TIGR03265  PhnT2: putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.7   0.4   6.4e-28   4.5e-26      18     224 ..     538     758 ..     521     786 .. 0.79

  Alignments for each domain:
  == domain 1    score: 89.7 bits;  conditional E-value: 6.4e-28
   TIGR03265  18 talkdislsvkkgelvclLGPsGCGkttLLriiaGLekqdaGaillggrditrlppq..krdyGivfqsYaLfPnltvaeniayGLkn.kklkreevaerveelLelvg.......lsgseekyPgqlsGGqqqrvaLaralalsPglLLLDePlsaLDa...kvrekLreelkklqrkl...gvttimvthdqeealslaDrivvmnkgkieqvgtPeeiYe 224
                 ++ +  sl+v +g +v+l G sG Gk+t++ ++  + ++++Ga++ +g d+ +l ++  +++ G+v q   Lf   tvaeniayG         ++   r                  ++      +lsGGq+qrva+aral+ +P +LLLDe  saLD    ++ +    e+ k q+kl   g tti ++h     +  +D+i+v+ +g++   gt + + e
  MMETSP1137-20121227|8131_1 538 QVCNGYSLHVPAGQVVALCGQSGSGKSTIINLVERFYDPHRGAVHFDGVDVRTLNVSwlRQQIGLVGQEPXLFVG-TVAENIAYGKXXgCDAXGDRXGGRXXPTRTXSSxxxcxsxYXTQVGXXGXKLSGGQKQRVAIARALVRKPAVLLLDEATSALDNeseRIVQAALDEIIKEQKKLtgrGRTTITIAHRL-TTIRNSDKIAVVHRGQVLEEGTHNALME 758
                 6667889********************************************988765337899**********86.9********7531222223333333333333330000001344445556679*******************************73335556666889999999965568*******76.57999****************9887765 PP

>> TIGR03608  L_ocin_972_ABC: putative bacteriocin export ABC transporter, lactococcin 972 group
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.8   0.0   4.1e-27   2.9e-25      12     203 ..     538     739 ..     530     742 .. 0.75

  Alignments for each domain:
  == domain 1    score: 86.8 bits;  conditional E-value: 4.1e-27
   TIGR03608  12 eilkklslkiekGelvaivGesGsGKstlLnilgllekkdsgkvilegkekaklkskkaskllreklgylFqnfaLlenetveenlelalklkkkskkek...ekkkkevlekvgl.....ekklkkkiyelsgGekqRvalarillkeselilADEPtgsLDkknreevlellkelke.......egktiiivtHdpevaekadrv 203
                 ++ +  sl++ +G++va++G+sGsGKst++n++ ++ ++++g v ++g + +    + + + lr+++g + q+  L    tv en+  +         ++   +   +++  +         ++      +lsgG+kqRva+ar+l++++ ++l DE t++LD++++ +v + l+e+ +       +g+t i + H  +  +++d++
  MMETSP1137-20121227|8131_1 538 QVCNGYSLHVPAGQVVALCGQSGSGKSTIINLVERFYDPHRGAVHFDGVDVR----TLNVSWLRQQIGLVGQEPXLF-VGTVAENIAYGKXXGCDAXGDRxggRXXPTRTXSSXXXcxsxyXTQVGXXGXKLSGGQKQRVAIARALVRKPAVLLLDEATSALDNESERIVQAALDEIIKeqkkltgRGRTTITIAHRLTTIRNSDKI 739
                 688899********************************************44....5667899**********9998.579*****998776554444331112222333333222210113333445589**********************************998877776655441111111677888888888777777765 PP

>> TIGR02982  heterocyst_DevA: ABC exporter ATP-binding subunit, DevA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.4   0.1   7.8e-28   5.4e-26      17     219 ..     536     747 ..     521     748 .. 0.78

  Alignments for each domain:
  == domain 1    score: 89.4 bits;  conditional E-value: 7.8e-28
   TIGR02982  17 rkqvlfdinleiepgeiviltGpsGsGkttlltligglrsvqeGelkvlgkelkgasekelvqvrrkiGyifqahnllesltaeqnvrmalelkekls.......akeakakaeelleavgleerldykpedlsgGqkqrvaiaralvarPklvladePtaaldkksgrevvellqklar......eqgttillvthdnrildvadrivkmedGkl 219
                   qv +  +l++ +g++v l G+sGsGk t+++l+  +     G +++ g +++ +   ++  +r++iG++ q+  l+   t+ +n+  +     +            +++ ++          ++     +lsgGqkqrvaiaralv +P ++l de t+ald++s r v   l ++ +       +g t + ++h    +  +d+i  + +G++
  MMETSP1137-20121227|8131_1 536 DVQVCNGYSLHVPAGQVVALCGQSGSGKSTIINLVERFYDPHRGAVHFDGVDVRTL---NVSWLRQQIGLVGQEPXLFVG-TVAENIAYGKXXGCDAXgdrxggrXXPTRTXSSXXXCXSXYXTQVGXXGXKLSGGQKQRVAIARALVRKPAVLLLDEATSALDNESERIVQAALDEIIKeqkkltGRGRTTITIAHRLTTIRNSDKIAVVHRGQV 747
                 569999*****************************************999987765...57789***********99965.88899999876654433000011023334455555566667779********************************************99988888888333333446677777777777777888888888775 PP

>> TIGR02142  modC_ABC: molybdate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.0   0.2   4.4e-27     3e-25      17     234 ..     544     771 ..     538     795 .. 0.77

  Alignments for each domain:
  == domain 1    score: 87.0 bits;  conditional E-value: 4.4e-27
   TIGR02142  17 dlelpgkgvtalFGrsGsGktslirliaGLtrpdegeivldgevlqdsrkkiilppekRrvgyvFqeArLFpHlsvrenLrYGlkr.arae..e.......rriseekvielLgiehLleRlpgkLsGGekqRvaigRAlLssPeLLlmDePLaaLDekrkkeilPyLerlsaelk.i.....PilyvsHsldevarladrvvvledGrvkaagkleevlaskdlsllekeeag 234
                 +l++p+ +v+al G+sGsGk+++i+l+     p++g ++ dg  +   r  + ++  + ++g v qe  LF   +v+en+ YG    ++a   +       +r               +     kLsGG kqRvai+RAl+ +P +Ll+De  +aLD+++ + +   L+++ +e k +       + ++H l+ +   +d++ v++ G+v  +g+ +++++++ + +   e ++
  MMETSP1137-20121227|8131_1 544 SLHVPAGQVVALCGQSGSGKSTIINLVERFYDPHRGAVHFDGVDV---R-TLNVSWLRQQIGLVGQEPXLFVG-TVAENIAYGKXXgCDAXgdRxggrxxpTRTXSSXXXCXSXYXTQVGXXGXKLSGGQKQRVAIARALVRKPAVLLLDEATSALDNESERIVQAALDEIIKEQKkLtgrgrTTITIAHRLTTIR-NSDKIAVVHRGQVLEEGTHNALMEKHGVYFELVEAQS 771
                 5789999***********************************744...4.4899*****************86.8********86423332112111111122222223333445567888899************************************99999999887666542323333689*******995.69*********************99887744444444 PP

>> TIGR01188  drrA: daunorubicin resistance ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.1   0.0   2.2e-10   1.5e-08       7      77 ..     538     609 ..     533     620 .. 0.90
   2 !   54.9   0.1   2.5e-17   1.7e-15     124     218 ..     663     763 ..     656     799 .. 0.80

  Alignments for each domain:
  == domain 1    score: 32.1 bits;  conditional E-value: 2.2e-10
   TIGR01188   7 kAvdgvnlkveegevfglLGPnGAGKtttikmLttllkPdsGtarvaGyDv.vrepdevRrsigvvpqkasv 77 
                 +  +g +l+v++g+v++l G  G GK+t+i+++     P  G +   G Dv + + + +R++ig+v+q+  +
  MMETSP1137-20121227|8131_1 538 QVCNGYSLHVPAGQVVALCGQSGSGKSTIINLVERFYDPHRGAVHFDGVDVrTLNVSWLRQQIGLVGQEPXL 609
                 5667889********************************************5568899**********9765 PP

  == domain 2    score: 54.9 bits;  conditional E-value: 2.5e-17
   TIGR01188 124 tysgGmrrrlelaasliaqPevlfLDEPtiGLDprtrraiw....dlieelkke...gvtilltthyleeadkladrvaiidkGkiiaedtpeeLKervgke 218
                 ++sgG+++r+ +a++l+ +P+vl LDE t+ LD ++ r++     ++i+e kk    g t++  +h l  +   +d++a++++G+++ e+t + L e+ g  
  MMETSP1137-20121227|8131_1 663 KLSGGQKQRVAIARALVRKPAVLLLDEATSALDNESERIVQaaldEIIKEQKKLtgrGRTTITIAHRLTTIR-NSDKIAVVHRGQVLEEGTHNALMEKHGVY 763
                 68**********************************998762222456655543434899********9986.59********************8765543 PP

>> TIGR02769  nickel_nikE: nickel import ATP-binding protein NikE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.5   0.0   4.4e-11   3.1e-09      24      82 ..     537     595 ..     527     610 .. 0.90
   2 !   51.5   0.1   2.9e-16     2e-14     149     236 ..     662     754 ..     654     776 .. 0.77

  Alignments for each domain:
  == domain 1    score: 34.5 bits;  conditional E-value: 4.4e-11
   TIGR02769  24 kavldnvslsleeGetvallGrsGaGkstlarlllGlekPakGevsfrGqdlakldrkq 82 
                  +v ++ sl++ +G+ val G+sG+Gkst+  l+  +  P +G v+f G+d+  l+ + 
  MMETSP1137-20121227|8131_1 537 VQVCNGYSLHVPAGQVVALCGQSGSGKSTIINLVERFYDPHRGAVHFDGVDVRTLNVSW 595
                 579999***********************************************999764 PP

  == domain 2    score: 51.5 bits;  conditional E-value: 2.9e-16
   TIGR02769 149 rqlsGGqlqriniaralavePklivldeavsnld....lvlqasilellkklkqef..GlaylfithdlrlvqkfaqrvlvldeGqiveeikva 236
                  +lsGGq qr++iaral  +P +++ldea s ld    ++ qa++ e++k+ k+ +  G + + i+h l  ++  +++++v+++Gq++ee +  
  MMETSP1137-20121227|8131_1 662 XKLSGGQKQRVAIARALVRKPAVLLLDEATSALDneseRIVQAALDEIIKEQKKLTgrGRTTITIAHRLTTIR-NSDKIAVVHRGQVLEEGTHN 754
                 689******************************9333335666655555555554412667889999999886.59*************97543 PP

>> TIGR03258  PhnT: 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.1   0.2   7.2e-27     5e-25      22     230 ..     538     759 ..     516     765 .. 0.75

  Alignments for each domain:
  == domain 1    score: 86.1 bits;  conditional E-value: 7.2e-27
   TIGR03258  22 vvlddlsleieaGellallGksGsGkttllravaGfvkadGGrllvadrdlthlp..pykrnlallvqnyalfphlkveenvafGlrarkqskal......iaervadalklvqlsdaaarl...paqlsGGqqqrvalaralvvrpdvllldeplsaldaqlrasvv...eelkalhrelpel..tvlyvthdrdealvladkillmkeGslialGetralyda 230
                  v +  sl++ aG+++al G+sGsGk+t++ +v  f  +  G +   + d+  l     +++++l+ q+  lf   +v en+a+G      +  +         r   +      s + +++     +lsGGq+qrva+aralv +p vlllde  sald +    v+   +e+ +  ++l     t + ++h    ++  +dki +++ G++++ G+ +al ++
  MMETSP1137-20121227|8131_1 538 QVCNGYSLHVPAGQVVALCGQSGSGKSTIINLVERFYDPHRGAVHFDGVDVRTLNvsWLRQQIGLVGQEPXLFVG-TVAENIAYGKXXGCDAXGDrxggrxXPTRTXSS-XXXCXSXYXTQVgxxGXKLSGGQKQRVAIARALVRKPAVLLLDEATSALDNESERIVQaalDEIIKEQKKLTGRgrTTITIAHR-LTTIRNSDKIAVVHRGQVLEEGTHNALMEK 759
                 477889*********************************************87641156889***********75.9*******9876554444410000033343333.333445555544111578********************************9866555500055555555555322267777775.567889*******************99875 PP

>> TIGR03410  urea_trans_UrtE: urea ABC transporter, ATP-binding protein UrtE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.1   0.1   5.9e-26   4.1e-24       3     221 ..     524     758 ..     522     765 .. 0.73

  Alignments for each domain:
  == domain 1    score: 83.1 bits;  conditional E-value: 5.9e-26
   TIGR03410   3 venlevaYges...evlrdvslevekgevvavlGrngvGkttllkalvgllkvksGeielegeditklkpeervkaGiayvpqGreifpkltveenlelg....lealkkk..ekkipeeiyelFPvlke....mlkRrgGdLsGGqqqqlaiaRaLvtePklllLDePteGiqPs...iik.eiekvik...elakekdlaillveqvldfaleladrylvlerGevvaegekeelde 221
                 v+++  aY ++   +v ++ sl+v++g+vva+ G+ g Gk+t++  +   ++ ++G+++++g d+++l+ +   ++ i+ v q   +f   tv+en+  g     +a  ++   +  p +  +    + +         g +LsGGq+q +aiaRaLv +P +llLDe t  +      i++  ++++ik   +l+ ++  +i  + + l   ++ +d+++v++rG+v++eg++++l e
  MMETSP1137-20121227|8131_1 524 VKDVYFAYPSApdvQVCNGYSLHVPAGQVVALCGQSGSGKSTIINLVERFYDPHRGAVHFDGVDVRTLNVS-WLRQQIGLVGQEPXLFVG-TVAENIAYGkxxgCDAXGDRxgGRXXPTRTXSSXXXCXSxyxtQVGXXGXKLSGGQKQRVAIARALVRKPAVLLLDEATSALDNEserIVQaALDEIIKeqkKLTGRGRTTIT-IAHRLTTIRN-SDKIAVVHRGQVLEEGTHNALME 758
                 666666665432228999***********************************************999865.67899******9999976.9*****987211144555446766666666665555544000045566779****************************9887652224431234444311044444455555.5555655554.8***************9988655 PP

>> TIGR03873  F420-0_ABC_ATP: proposed F420-0 ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.9   0.8   2.6e-25   1.8e-23      14     224 ..     537     756 ..     530     764 .. 0.79

  Alignments for each domain:
  == domain 1    score: 80.9 bits;  conditional E-value: 2.6e-25
   TIGR03873  14 rlivddvdvtaPaGaltgllGPnGsGkstllrllaGllapdaGevdlagadlkalsrrararrvalveqdsdaevplsvrdvvalGriPhrslfaadsdedae....vvdralarvelssladrdlstlsGGerqrvhlaralaqePklllldePtnhldvsaqlellalvrela.......aegvtvvvalhdlnlaasvcdhvvvldgGrvvaaGppaev 224
                 + + ++  + +PaG++ +l G  GsGkst+++l+     p++G+v+++g+d+++l+     +++ lv q+    v  +v + +a G+     + +              +   +     +        lsGG++qrv +aral ++P +lllde t  ld ++   + a++ e++       + g t++   h l+  ++ +d++ v++ G+v   G+ + +
  MMETSP1137-20121227|8131_1 537 VQVCNGYSLHVPAGQVVALCGQSGSGKSTIINLVERFYDPHRGAVHFDGVDVRTLNVSWLRQQIGLVGQEPXLFVG-TVAENIAYGKXXGCDAXGDRXGGRXXptrtXSSXXXCXSXYXTQVGXXGXKLSGGQKQRVAIARALVRKPAVLLLDEATSALDNESERIVQAALDEIIkeqkkltGRGRTTITIAHRLTT-IRNSDKIAVVHRGQVLEEGTHNAL 756
                 6788899999***********************************************************9877665.899999*99987766655444333330000333333333344444456678********************************77655555555555555556659999999999***85.7899***********999987765 PP

>> TIGR02211  LolD_lipo_ex: lipoprotein releasing system, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.8   0.1   2.5e-24   1.7e-22      16     218 ..     535     746 ..     522     749 .. 0.79

  Alignments for each domain:
  == domain 1    score: 77.8 bits;  conditional E-value: 2.5e-24
   TIGR02211  16 leievlkgvsleiekgelvaivGssGsGkstllhllggldkptsGevllkGkelsklssneraklrnkklGfiyqfhhlladftalenvamPlliskkskke........akerakellekvglekrinkkpselsGGerqrvaiaralvnkPklvladePtgnldkktakkifelllelnkeknt......allvvthdlelakkldrvlelkdgk 218
                  +++v +g sl++ +g++va+ G+sGsGkst++ l+  + +p  G v ++G ++++l+    + lr +++G++ q   l+   t+ en+a     +     +        +++ +           ++     +lsGG++qrvaiaralv kP+++l de t+ ld+++ +++   l e+ ke++       + + ++h l+ +++ d+   ++ g+
  MMETSP1137-20121227|8131_1 535 PDVQVCNGYSLHVPAGQVVALCGQSGSGKSTIINLVERFYDPHRGAVHFDGVDVRTLN---VSWLR-QQIGLVGQEPXLFVG-TVAENIAYGKXXGCDAXGDrxggrxxpTRTXSSXXXCXSXYXTQVGXXGXKLSGGQKQRVAIARALVRKPAVLLLDEATSALDNESERIVQAALDEIIKEQKKltgrgrTTITIAHRLTTIRNSDKIAVVHRGQ 746
                 5799***************************************************997...56788.679*****9998886.899*****99987655443111111113444555556667888999999***************************************9999998887776531122225667777777777777777666666 PP

>> TIGR01166  cbiO: cobalt ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.7   0.1   1.2e-24   8.1e-23       4     178 ..     536     714 ..     531     729 .. 0.82

  Alignments for each domain:
  == domain 1    score: 78.7 bits;  conditional E-value: 1.2e-24
   TIGR01166   4 eaevlkglnlavergevlallGanGaGkstlllhlnGllrPksGkvlldGeeldysrkgllelrkkvalvlqdpddqlfaadvdedvafgpln.lGlseaeverrvrealaavd....isgleerp...thllsgGekkrvaiagavalrpdvllldePtagldpaGaeqlleilrklreeGk 178
                 +++v +g +l+v  g+v+al G+ G+Gkst+++ ++    P+ G+v +dG ++     ++  lr++++lv q+p   lf  +v e++a+g        +++   r     +  +     s +  +      +lsgG+k+rvaia a++ +p vlllde t+ ld + ++ + ++l+++ +e k
  MMETSP1137-20121227|8131_1 536 DVQVCNGYSLHVPAGQVVALCGQSGSGKSTIINLVERFYDPHRGAVHFDGVDVR--TLNVSWLRQQIGLVGQEP--XLFVGTVAENIAYGKXXgCDAXGDRXGGRXXPTRTXSSxxxcXSXYXTQVgxxGXKLSGGQKQRVAIARALVRKPAVLLLDEATSALDNESERIVQAALDEIIKEQK 714
                 567899********************************************7765..5677889*********99..5*************864244556666666555444433111156676665111568*************************************99999999877655 PP

>> TIGR03005  ectoine_ehuA: ectoine/hydroxyectoine ABC transporter, ATP-binding protein EhuA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0   1.3e-05   0.00087      13      61 ..     537     585 ..     523     620 .. 0.82
   2 !   55.9   0.0   1.1e-17   7.8e-16     145     236 ..     662     758 ..     654     761 .. 0.82

  Alignments for each domain:
  == domain 1    score: 16.4 bits;  conditional E-value: 1.3e-05
   TIGR03005  13 ltvldglelevaaGekvaliGpsGsGkstilrilmtletideGsikveg 61 
                 ++v +g +l+v aG+ val G sGsGksti+ ++  +   + G ++ +g
  MMETSP1137-20121227|8131_1 537 VQVCNGYSLHVPAGQVVALCGQSGSGKSTIINLVERFYDPHRGAVHFDG 585
                 67899*************************9987666666666666555 PP

  == domain 2    score: 55.9 bits;  conditional E-value: 1.1e-17
   TIGR03005 145 aqlsGGqkqrvaiaralalrpkvllfdevtsaldpelveevlnvlrrlasetd.l.....tmllvthemgfarefadrvlffdkGkiveeGkpdeifr 236
                  +lsGGqkqrvaiaral  +p vll+de+tsald e    v + l ++ +e++ l     t + ++h++   r+ +d++   ++G++ eeG  + +++
  MMETSP1137-20121227|8131_1 662 XKLSGGQKQRVAIARALVRKPAVLLLDEATSALDNESERIVQAALDEIIKEQKkLtgrgrTTITIAHRLTTIRN-SDKIAVVHRGQVLEEGTHNALME 758
                 68********************************9976666666666666543232222267899999999987.8***************9988876 PP

>> TIGR02770  nickel_nikD: nickel import ATP-binding protein NikD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.2   0.0   2.4e-07   1.7e-05       4      72 ..     542     608 ..     539     616 .. 0.84
   2 !   45.9   0.0   1.3e-14   9.2e-13     125     215 ..     663     758 ..     657     770 .. 0.86

  Alignments for each domain:
  == domain 1    score: 22.2 bits;  conditional E-value: 2.4e-07
   TIGR02770   4 dvnlslkrgkvlalvGesGsGksltalailglldkeltktsGeilldgkelaal..alrgreialilqnPr 72 
                 + +l++  g+v+al G+sGsGks+    +  + d      +G + +dg ++ +l  +   ++i+l+ q+P 
  MMETSP1137-20121227|8131_1 542 GYSLHVPAGQVVALCGQSGSGKSTIINLVERFYD----PHRGAVHFDGVDVRTLnvSWLRQQIGLVGQEPX 608
                 5689999****************87777777766....679*********998855667889999999996 PP

  == domain 2    score: 45.9 bits;  conditional E-value: 1.3e-14
   TIGR02770 125 elsGGmlqRvmialallleaplliaDePttdlDvvvqaevLklleelrekr......glgillithDlgvvaeladevavmekGkivergtvkelfq 215
                 +lsGG  qRv ia al+ ++++l+ De t++lD  ++  v   l+e+ +++      g + + i+h l+ + +  d++av+++G+++e+gt + l++
  MMETSP1137-20121227|8131_1 663 KLSGGQKQRVAIARALVRKPAVLLLDEATSALDNESERIVQAALDEIIKEQkkltgrGRTTITIAHRLTTI-RNSDKIAVVHRGQVLEEGTHNALME 758
                 79********************************9999999999998766422232267899*******99.568***************9998876 PP

>> TIGR02324  CP_lyasePhnL: phosphonate C-P lyase system protein PhnL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.8   0.0   1.2e-09   8.4e-08      21      67 ..     537     583 ..     527     605 .. 0.89
   2 !   37.3   0.1     6e-12   4.2e-10     150     208 ..     664     729 ..     660     743 .. 0.79

  Alignments for each domain:
  == domain 1    score: 29.8 bits;  conditional E-value: 1.2e-09
   TIGR02324  21 lpvlkevsleveaGelvalsGksGaGkstllkslyanYlpesgrilv 67 
                 ++v++  sl+v aG++val G+sG+Gkst++  + + Y p+ g +  
  MMETSP1137-20121227|8131_1 537 VQVCNGYSLHVPAGQVVALCGQSGSGKSTIINLVERFYDPHRGAVHF 583
                 799*************************************9998865 PP

  == domain 2    score: 37.3 bits;  conditional E-value: 6e-12
   TIGR02324 150 fsGGekqRvniaraliadrPiLLLdePtasLdaanrkvvv....elikeaka...rgaaligifhd 208
                  sGG kqRv iaral+ +  +LLLde t++Ld+   ++v     e+ike+k+   rg + i+i h 
  MMETSP1137-20121227|8131_1 664 LSGGQKQRVAIARALVRKPAVLLLDEATSALDNESERIVQaaldEIIKEQKKltgRGRTTITIAHR 729
                 79***************8889************999888633347777777544467888888885 PP

>> TIGR02633  xylG: D-xylose ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.9   0.0   1.8e-21   1.3e-19      13     228 ..     536     756 ..     526     780 .. 0.81

  Alignments for each domain:
  == domain 1    score: 67.9 bits;  conditional E-value: 1.8e-21
   TIGR02633  13 gvkaldnidlklraGeivslcGenGaGkstlmkvlsgvyphGtydGeilfegeelkassirdterkGiviihqeltlvkelsvleniflGneit..lkGglmdydamvlrakellre.lkldasnvtrpvsdlGlGqqqlveiakalnkqvrllildepsaslteke...tei.lldiirdlka...kgvacvyishkleevkavsdtisvirdGqhvatkdaeal 228
                 +v+  ++ +l++ aG++v+lcG+ G+Gkst++ ++   y    + G ++f+g ++++ +++   r+ i ++ qe  l    +v+eni  G+       G +        r+ +      +   ++v     +l +Gq+q v ia+al ++  +l+lde +++l ++    ++  l +ii++ k+   +g + + i+h+l  ++  sd+i+v+  Gq +     +al
  MMETSP1137-20121227|8131_1 536 DVQVCNGYSLHVPAGQVVALCGQSGSGKSTIINLVERFYD--PHRGAVHFDGVDVRTLNVSWL-RQQIGLVGQEPXLFVG-TVAENIAYGKXXGcdAXGDRXGGRXXPTRTXSSXXXcXSXYXTQVGXXGXKLSGGQKQRVAIARALVRKPAVLLLDEATSALDNESeriVQAaLDEIIKEQKKltgRGRTTITIAHRLTTIRN-SDKIAVVHRGQVLEEGTHNAL 756
                 789999*****************************99995..468***************865.678*******999876.8********98751156778777777777766554414556677777788999*****************************865412233324569987554333999***********986.9*********98865554444 PP

>> TIGR01184  ntrCD: nitrate ABC transporter, ATP-binding proteins C and D
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.6   0.0   1.2e-08   8.3e-07       4      50 ..     543     589 ..     540     619 .. 0.93
   2 !   40.0   0.1   9.8e-13   6.8e-11     113     175 ..     662     730 ..     654     753 .. 0.79

  Alignments for each domain:
  == domain 1    score: 26.6 bits;  conditional E-value: 1.2e-08
   TIGR01184   4 vdleikkgefislighsgcgkstllnliaglekptsgavilegkeit 50 
                  +l++  g+ ++l g sg gkst++nl+  +  p  gav+++g ++ 
  MMETSP1137-20121227|8131_1 543 YSLHVPAGQVVALCGQSGSGKSTIINLVERFYDPHRGAVHFDGVDVR 589
                 579999*************************************9886 PP

  == domain 2    score: 40.0 bits;  conditional E-value: 9.8e-13
   TIGR01184 113 eqlsggmkqrvaiaralsirpklllldepfgaldaltreelqekllkiveearv......tvlmvthdv 175
                  +lsgg kqrvaiaral  +p +lllde   ald  +   +q  l +i++e++       t++ ++h +
  MMETSP1137-20121227|8131_1 662 XKLSGGQKQRVAIARALVRKPAVLLLDEATSALDNESERIVQAALDEIIKEQKKltgrgrTTITIAHRL 730
                 589*********************************************999763222222566666655 PP

>> TIGR03415  ABC_choXWV_ATP: choline ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.0   0.1   7.4e-20   5.1e-18      37     253 ..     537     757 ..     532     774 .. 0.79

  Alignments for each domain:
  == domain 1    score: 63.0 bits;  conditional E-value: 7.4e-20
   TIGR03415  37 vlgvadasldveeGeilvlmGlsGsGkssllravnglnpvsrGkvlvkdedkevdvakcdeatlrklrtkrvsmvfqkfallPWrtveenvafGlelsGvakaer....rkrveeqlelvgl.aeWad...kkvgelsGGmqqrvGlarafateadillmdePfsaldP...liraklqdellelqkklk...ktivfvshdldealklGnriaimegGrivqlgtpeeiv 253
                 v  +++ sl+v  G+++ l G sGsGks+++  v ++    rG v+       vdv +++ + lr    +++ +v q+  l+   tv+en+a+G      a  +r        +         + + +        lsGG +qrv +ara+  +  +ll+de  sald     i +   de+++ qkkl    +t + ++h l   ++  ++ia+++ G+++  gt + ++
  MMETSP1137-20121227|8131_1 537 VQVCNGYSLHVPAGQVVALCGQSGSGKSTIINLVERFYDPHRGAVHFD----GVDVRTLNVSWLR----QQIGLVGQEPXLF-VGTVAENIAYGKXXGCDAXGDRxggrXXPTRTXSSXXXCxSXYXTqvgXXGXKLSGGQKQRVAIARALVRKPAVLLLDEATSALDNeseRIVQAALDEIIKEQKKLTgrgRTTITIAHRLT-TIRNSDKIAVVHRGQVLEEGTHNALM 757
                 6668999*************************************9874....5889999888877....48*******9887.57********9765443333331110333333333333303333301134568********************************73334566666**********76669*********7.7999**************99987765 PP

>> TIGR03411  urea_trans_UrtD: urea ABC transporter, ATP-binding protein UrtD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.9   0.0   1.1e-19   7.3e-18      17     233 ..     539     760 ..     522     765 .. 0.85

  Alignments for each domain:
  == domain 1    score: 62.9 bits;  conditional E-value: 1.1e-19
   TIGR03411  17 alndlslsveegelrviiGpnGaGkttllDvitGktrpdeGsvlfkgkdltklkeaeiarlGigRkfqkpsvfeeltvlenlelalkadksvlallfarlskeekerieevleligLeekadkkaglLshGqkqwLeigmllvqepkllllDePvaGmtdeetektaellkelake........rsvvvvehDmefvrelaekvtvlheGkvlaeGsldevqade 233
                   n  sl+v +g++ ++ G  G+Gk+t+++++     p++G v f+g d++ l+ +   r+ ig   q+p +f   tv+en+        +        +   +++  +         +++     +Ls Gqkq++ i+  lv++p++lllDe ++ + +e ++ +   l e+ ke        r+ + + h ++ +r+ ++k++v+h+G+vl eG+ + + + +
  MMETSP1137-20121227|8131_1 539 VCNGYSLHVPAGQVVALCGQSGSGKSTIINLVERFYDPHRGAVHFDGVDVRTLNVS-WLRQQIGLVGQEPXLFV-GTVAENIAYGKXXGCDAXGDRXGGRXXPTRTXSSXXXCXSXYXTQVGXXGXKLSGGQKQRVAIARALVRKPAVLLLDEATSALDNESERIVQAALDEIIKEqkkltgrgRTTITIAHRLTTIRN-SDKIAVVHRGQVLEEGTHNALMEKH 760
                 567889********************************************998876.56778***********7.59*****99999999999988888888888888888888899999*************************************987765555444444433212222223789**********98.578*************998877665 PP

>> TIGR00955  3a01204: pigment precursor permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.8   0.0     6e-19   4.2e-17      36     254 ..     535     756 ..     504     760 .. 0.80

  Alignments for each domain:
  == domain 1    score: 59.8 bits;  conditional E-value: 6e-19
   TIGR00955  36 pekellknvsGvaksGellAvlGsSGaGKtTLlnalafrsekglkvsgdvllnG...ekveakemraisayvqqd.dlfiptltvrehLmfsahlrlkrrltkk.ekrerveevleelgLrkcadtrigvpgrvkglSgGerkRlalaselltdPilLfcDEPTsGLDsfs.....a..asvvkvLkklaqkgktviltiHQPsselfelfdkiillaeGrvvylGspeea 254
                 p  ++ ++ s ++  G+++A+ G SG+GK+T++n +           g+v  +G   + ++ + +r+  + v q+  lf++  tv e++ +      ++   +   +        +     +   t +g  g    lSgG+++R+a+a  l+ +P +L++DE Ts LD  s     a   +++k  kkl+ +g+t i+  H  +    ++ dki ++ +G+v  +G+ + +
  MMETSP1137-20121227|8131_1 535 PDVQVCNGYSLHVPAGQVVALCGQSGSGKSTIINLVERFYDPHR---GAVHFDGvdvRTLNVSWLRQQIGLVGQEpXLFVG--TVAENIAYGKXXGCDAXGDRXgGRXXPTRTXSSXXXCXSXYXTQVGXXGX--KLSGGQKQRVAIARALVRKPAVLLLDEATSALDNESerivqAalDEIIKEQKKLTGRGRTTITIAHRLT--TIRNSDKIAVVHRGQVLEEGTHNAL 756
                 778889999999**********************9875544332...3466666111556778999999999776368888..789***********999888888999999999999999999*****9996..8********************************87622222212467888899*************866..57999**********9999887665 PP

>> TIGR01978  sufC: FeS assembly ATPase SufC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.9   0.0   7.2e-08     5e-06      11      72 ..     535     594 ..     522     619 .. 0.84
   2 !   35.6   0.0   1.9e-11   1.3e-09     145     230 ..     664     754 ..     649     763 .. 0.87

  Alignments for each domain:
  == domain 1    score: 23.9 bits;  conditional E-value: 7.2e-08
   TIGR01978  11 edkeiLkglnlevkkGevhaimGpnGsGkstLskvlaghekyevtsGeiklkgqdlleleve 72 
                  d ++ +g +l+v +G+v+a+ G+ GsGkst+ + +   + y   +G ++++g d+  l+v 
  MMETSP1137-20121227|8131_1 535 PDVQVCNGYSLHVPAGQVVALCGQSGSGKSTIINLVE--RFYDPHRGAVHFDGVDVRTLNVS 594
                 5789999*************************99885..678889************99986 PP

  == domain 2    score: 35.6 bits;  conditional E-value: 1.9e-11
   TIGR01978 145 fsGGekkrneilqlallePklaiLDeiDsGlDvDalkivaegvnklree.....ekalliithyerllelikPdvvhvlldGrivksGdve 230
                  sGG k+r  i + ++ +P + +LDe+ s lD ++ +iv + ++++ +e      ++   it  +rl    + d++ v+++G+++++G  +
  MMETSP1137-20121227|8131_1 664 LSGGQKQRVAIARALVRKPAVLLLDEATSALDNESERIVQAALDEIIKEqkkltGRGRTTITIAHRLTTIRNSDKIAVVHRGQVLEEGTHN 754
                 69***************************************999987763333345668999999***********************865 PP

>> TIGR01271  CFTR_protein: cystic fibrosis transmembrane conductor regulator (CFTR)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.2   0.0   9.9e-10   6.9e-08    1215    1312 ..     519     618 ..     507     623 .. 0.91
   2 !   28.1   0.0   1.1e-09   7.5e-08     540     660 ..     655     781 ..     649     799 .. 0.78

  Alignments for each domain:
  == domain 1    score: 28.2 bits;  conditional E-value: 9.9e-10
   TIGR01271 1215 ggqmtvkdltakyteagr.avlqdlsfsveagqrvgllgrtgsgkstllsallrlls.tegeiqidgvswnsvtlqkwrkafgvipqkvfilsgtfrknl 1312
                   g+++vkd+   y +a    v +  s+ v agq v l g++gsgkst++  + r+ +   g ++ dgv   ++ +   r+ +g++ q   ++ gt   n+
  MMETSP1137-20121227|8131_1  519 RGEIEVKDVYFAYPSAPDvQVCNGYSLHVPAGQVVALCGQSGSGKSTIINLVERFYDpHRGAVHFDGVDVRTLNVSWLRQQIGLVGQEPXLFVGTVAENI 618 
                  69999****999999865268999******************************997357***********************************99987 PP

  == domain 2    score: 28.1 bits;  conditional E-value: 1.1e-09
   TIGR01271 540 tvlgeggitlsggqrarislaravykdadlylldspfsyldvvtekeifesclc......klla..nktrilvtsklehlkkadkilllhegscyfygtfselqakkpdfsskllgleafdslsaerrn 660
                 t +g  g  lsggq+ r+++ara+ +   + lld   s ld  +e+   ++ l       k l+   +t i ++ +l  ++++dki ++h g+    gt   l +k+  +  +l+ +++   + ae r 
  MMETSP1137-20121227|8131_1 655 TQVGXXGXKLSGGQKQRVAIARALVRKPAVLLLDEATSALDNESERI-VQAALDeiikeqKKLTgrGRTTITIAHRLTTIRNSDKIAVVHRGQVLEEGTHNALMEKHGVY-FELVEAQSNXIFMAESRR 781
                 56778899*********************************999874.344433000112333312467899999*************************9998877654.567777777777777665 PP

>> TIGR03269  met_CoM_red_A2: methyl coenzyme M reductase system, component A2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.1   0.0   0.00016     0.011      11      59 ..     535     581 ..     512     618 .. 0.75
   2 !   44.9   0.1   1.8e-14   1.3e-12     168     268 ..     663     768 ..     655     781 .. 0.81

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 0.00016
   TIGR03269  11 dglevlknisleleeGevlGilGksGaGksvllhllrGldeyeptsGki 59 
                  +++v +  sl++  G+v+ + G+sG+Gks +++l+     y+p+ G +
  MMETSP1137-20121227|8131_1 535 PDVQVCNGYSLHVPAGQVVALCGQSGSGKSTIINLVERF--YDPHRGAV 581
                 367777788888888888888888888888888887644..44555555 PP

  == domain 2    score: 44.9 bits;  conditional E-value: 1.8e-14
   TIGR03269 168 dlsGGekqrvvlarqlakeplllladeptGtldpktaklvhealkeavkeed.i.....slvltshwpeviedlsdkaillekGeiveeGepeevvakflesvseve 268
                 +lsGG+kqrv +ar l+++p +ll de t +ld ++  +v  al e +ke++ +     + +  +h    i + sdk  +++ G++ eeG+ + +++k+   ++ ve
  MMETSP1137-20121227|8131_1 663 KLSGGQKQRVAIARALVRKPAVLLLDEATSALDNESERIVQAALDEIIKEQKkLtgrgrTTITIAHRLTTIRN-SDKIAVVHRGQVLEEGTHNALMEKHGVYFELVE 768
                 79**********************************************9875232223256666777777765.7888899***********999987654444444 PP

>> TIGR01288  nodI: nodulation ABC transporter NodI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.8   0.2   2.7e-18   1.9e-16      16     226 ..     536     760 ..     521     773 .. 0.80

  Alignments for each domain:
  == domain 1    score: 57.8 bits;  conditional E-value: 2.7e-18
   TIGR01288  16 dkvvvndlsftiaagecfgllgpngagkstiarlvlglispdegkitvlgepvpa.rarlarakigvvpqfdnldreftvrenllvfgryfglst...reieevipsllef..arleskadvrv....adlsggmkrrltlaralindpqllildepttgldpharhliwerl.......rsllargktilltthlmeeaerlcdrlcvleagrkiaegrpdalideq 226
                 d  v n  s+ + ag++  l g  g+gksti  lv  +  p++g +   g +v + ++   r +ig+v q   l    tv en+  +g+  g ++   r      p+          s   ++v     +lsgg k+r+++aral+  p +l+lde t+ ld  +  ++   l       + l  rg+t +  +h +    r  d++ v+  g+ + eg  +al++++
  MMETSP1137-20121227|8131_1 536 DVQVCNGYSLHVPAGQVVALCGQSGSGKSTIINLVERFYDPHRGAVHFDGVDVRTlNVSWLRQQIGLVGQEPXLFV-GTVAENI-AYGKXXGCDAxgdRXGGRXXPTRTXSsxXXCXSXYXTQVgxxgXKLSGGQKQRVAIARALVRKPAVLLLDEATSALDNESERIVQAALdeiikeqKKLTGRGRTTITIAHRLTT-IRNSDKIAVVHRGQVLEEGTHNALMEKH 760
                 5668899*****************************************9998876378999*********999965.5999996.7****9988633355556666554430033445555555222268********************************9988776554411122226788899999999998865.6899********************9986 PP

>> TIGR01189  ccmA: heme ABC exporter, ATP-binding protein CcmA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.6   0.1   6.8e-17   4.7e-15      15     176 ..     539     712 ..     534     735 .. 0.79

  Alignments for each domain:
  == domain 1    score: 53.6 bits;  conditional E-value: 6.8e-17
   TIGR01189  15 lleglsfelaaGealvveGpnGiGKttLLRilaGLlkpesGevelndkelaeqrdel.aeellylgHldglKaeLsalEnLkfyaallq............seqktveealekv..gLsgledlpvaqLsAGqkrRlalarLllskaplWiLDEPttalDkegvellaellaaHlar 176
                 + +g s+++ aG+++++ G+ G+GK+t++ ++     p+ G v++++ ++ + + ++ ++++  +g ++ l    +++En+ + +                   + +  +                 +Ls Gqk+R+a+ar l+ k  + +LDE t alD+e+ ++++++l++ +++
  MMETSP1137-20121227|8131_1 539 VCNGYSLHVPAGQVVALCGQSGSGKSTIINLVERFYDPHRGAVHFDGVDVRTLNVSWlRQQIGLVGQEPXLF-VGTVAENIAYGKXXGCdaxgdrxggrxxP--TRTXSSXXXCxsXYXTQVGXXGXKLSGGQKQRVAIARALVRKPAVLLLDEATSALDNESERIVQAALDEIIKE 712
                 6677899******************************************99988776256777888888775.679******98876544555665544321..122222222200233333445679*************************************999999887665 PP

>> TIGR03740  galliderm_ABC: lantibiotic protection ABC transporter, ATP-binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3   0.0   5.5e-07   3.8e-05      14      83 ..     538     611 ..     523     620 .. 0.80
   2 !   32.6   0.0     2e-10   1.4e-08     124     218 ..     663     763 ..     655     768 .. 0.80

  Alignments for each domain:
  == domain 1    score: 21.3 bits;  conditional E-value: 5.5e-07
   TIGR03740  14 avvnnvslkvkknsvygllGpnGaGkstllklltGllrktsGeilldgrewtr...kdl.kkiGsliesPalye 83 
                 +v n  sl+v+  +v +l G  G+Gkst++ l+  +  +  G + +dg ++     + l ++iG + ++P l+ 
  MMETSP1137-20121227|8131_1 538 QVCNGYSLHVPAGQVVALCGQSGSGKSTIINLVERFYDPHRGAVHFDGVDVRTlnvSWLrQQIGLVGQEPXLFV 611
                 678899*****************************************976544000344246777777777775 PP

  == domain 2    score: 32.6 bits;  conditional E-value: 2e-10
   TIGR03740 124 qfslGmkqrlGiaiallnkPkllildePtnGldP....lGiqelrelik...sfpekGitvilsshilsevelladhiGiiseGklkyekkidkdedleelf 218
                 ++s G kqr+ ia al++kP +l+lde t  ld     +    l e+ik    ++ +G t i  +h l+ +++ +d+i +++ G++  e+  +   +   ++
  MMETSP1137-20121227|8131_1 663 KLSGGQKQRVAIARALVRKPAVLLLDEATSALDNeserIVQAALDEIIKeqkKLTGRGRTTITIAHRLTTIRN-SDKIAVVHRGQVLEEGTHNALMEKHGVY 763
                 6788****************************973322333467888862226889***************86.8**********99888777655555555 PP

>> TIGR03771  anch_rpt_ABC: anchored repeat-type ABC transporter, ATP-binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.3   0.0   0.00063     0.044       2      46 ..     546     590 ..     545     609 .. 0.80
   2 !   42.2   0.1   2.3e-13   1.6e-11     113     201 ..     663     758 ..     656     771 .. 0.80

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 0.00063
   TIGR03771   2 svdkGellgllGpnGaGkttllrailglikvakGsvkvagkssrk 46 
                 +v +G++++l G  G+Gk+t++  +  +  +++G v+ +g   r+
  MMETSP1137-20121227|8131_1 546 HVPAGQVVALCGQSGSGKSTIINLVERFYDPHRGAVHFDGVDVRT 590
                 6779*********************************99976553 PP

  == domain 2    score: 42.2 bits;  conditional E-value: 2.3e-13
   TIGR03771 113 elsGGqrqrvlvaralavkpslllldepftGldlps....qellvelfee...lagegtailmtthdlaeavatcdrvvllngrvvadgapdqlqd 201
                 +lsGGq+qrv +aral  kp +lllde  + ld+ s    q  l e+++e   l+g g++ +  +h l+   ++ +  v+  g+v+ +g+ + l +
  MMETSP1137-20121227|8131_1 663 KLSGGQKQRVAIARALVRKPAVLLLDEATSALDNESerivQAALDEIIKEqkkLTGRGRTTITIAHRLTTIRNSDKIAVVHRGQVLEEGTHNALME 758
                 79********************************9822223456777754333899999999999*998765555555666789999998887765 PP

>> TIGR03522  GldA_ABC_ATP: gliding motility-associated ABC transporter ATP-binding subunit GldA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.5   0.0   4.1e-07   2.9e-05      16      82 ..     538     605 ..     521     620 .. 0.80
   2 !   29.7   0.1   1.3e-09   9.2e-08     133     221 ..     663     758 ..     655     777 .. 0.80

  Alignments for each domain:
  == domain 1    score: 21.5 bits;  conditional E-value: 4.1e-07
   TIGR03522  16 kaldevsfeaekGeivGflGPnGaGkstlmkiltgylkadsGsvavagedvlk.nslevrkniGylPe 82 
                 ++ +  s+++  G++v + G  G+Gkst++ ++  +  ++ G+v+ +g dv + n    r++iG + +
  MMETSP1137-20121227|8131_1 538 QVCNGYSLHVPAGQVVALCGQSGSGKSTIINLVERFYDPHRGAVHFDGVDVRTlNVSWLRQQIGLVGQ 605
                 577889999******************************************87244557888887665 PP

  == domain 2    score: 29.7 bits;  conditional E-value: 1.3e-09
   TIGR03522 133 alskGyrqrvGlakallhdPkvlildePttGldPn..qlve..irevike....iakdktvilsthimqevealcdrviiinkGkivadkkleelka 221
                 +ls G +qrv +a+al+ +P vl+lde t+ ld +  ++v+  + e+ike     ++ +t i  +h +  ++   d++ ++++G+++ + + + l +
  MMETSP1137-20121227|8131_1 663 KLSGGQKQRVAIARALVRKPAVLLLDEATSALDNEseRIVQaaLDEIIKEqkklTGRGRTTITIAHRLTTIRN-SDKIAVVHRGQVLEEGTHNALME 758
                 799******************************7522677433556666522225789999999999999986.799*********99988877744 PP

>> TIGR03719  ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   1.4e-05   0.00096     323     383 ..     522     586 ..     494     612 .. 0.79
   2 !   31.7   0.0   1.9e-10   1.3e-08     160     205 ..     662     707 ..     655     728 .. 0.91

  Alignments for each domain:
  == domain 1    score: 15.7 bits;  conditional E-value: 1.4e-05
   TIGR03719 323 ievenlskafg...dklliddlsfklpkggivGviGpnGaGkstlfklitgkekpdsGelki.Ge 383
                 iev+++  a+    d  + +  s+++p+g +v + G  G+Gkst+++l+    +p++G++++ G 
  MMETSP1137-20121227|8131_1 522 IEVKDVYFAYPsapDVQVCNGYSLHVPAGQVVALCGQSGSGKSTIINLVERFYDPHRGAVHFdGV 586
                 5666666666422256788999*************************************997333 PP

  == domain 2    score: 31.7 bits;  conditional E-value: 1.9e-10
   TIGR03719 160 eklsGGekrrvalcrlllekPdlllldePtnhldaesvaWlekflk 205
                  klsGG+k+rva++r l+ kP +lllde t  ld es   ++  l 
  MMETSP1137-20121227|8131_1 662 XKLSGGQKQRVAIARALVRKPAVLLLDEATSALDNESERIVQAALD 707
                 58**********************************9887777665 PP

>> TIGR02323  CP_lyasePhnK: phosphonate C-P lyase system protein PhnK
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.6   0.3   4.5e-15   3.2e-13      21     228 ..     543     760 ..     523     770 .. 0.73

  Alignments for each domain:
  == domain 1    score: 47.6 bits;  conditional E-value: 4.5e-15
   TIGR02323  21 vsf.lypGevlgivGesGsGkstllkalaarlladaGevtyesrsrelellalseaerrlllrtewGlvhqnprGlrmevsaGaniger..llavgarhyGkiraaakwlekveid...aari..kpaafsGGmqqrlqiarnlvtrprlvfm.eptGGl..vs...vqarll.llr..glvrelglaviivth.lavarllaqrllvmkqGrvvesGltrvl.pkh 228
                  s+ +  G+v+++ G+sGsGkst+++ +     +++G v+++  +    + +l+ +     lr + Glv q+p  +  +v+     g+     a g r  G+   + +  +         +++     ++sGG +qr+ iar+lv +p ++++ e t  l   s   vqa l  +++  + ++  g ++i ++h l+ +r  ++++ v+++G+v+e+G  + l  kh
  MMETSP1137-20121227|8131_1 543 YSLhVPAGQVVALCGQSGSGKSTIINLVERFYDPHRGAVHFDGVD----VRTLNVS----WLRQQIGLVGQEPXLFVGTVAENIAYGKXxgCDAXGDRXGGRXXPTRTXSSXXXCXsxyXTQVgxXGXKLSGGQKQRVAIARALVRKPAVLLLdEATSALdnESeriVQAALDeIIKeqKKLTGRGRTTITIAHrLTTIRN-SDKIAVVHRGQVLEEGTHNALmEKH 760
                 45535569*********************************9766....5555443....567899*******97777776655555541146899999999876665444433320003344558899********************999999****953223446776654333113344566789999998999986.789*************986664444 PP

>> TIGR01194  cyc_pep_trnsptr: cyclic peptide transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   0.0     0.012      0.86      41     167 ..     132     260 ..     110     282 .. 0.81
   2 !   20.3   0.0   5.1e-07   3.6e-05     334     406 ..     519     589 ..     459     615 .. 0.86
   3 !   15.3   0.0   1.7e-05    0.0012     468     550 ..     662     750 ..     654     754 .. 0.85

  Alignments for each domain:
  == domain 1    score: 5.9 bits;  conditional E-value: 0.012
   TIGR01194  41 inqalheetflrq.vllsfvGlsllallsrivadlfta.yvsqriiarlrkelgekvlsapleeverrrahrlltlltsdidtlsdtll.ilttllvelavtlfglaylayl.svvvflltvvl.ivlGvaa 167
                  n a+ +++  rq vll  vG   +al +  +  ++++  +  r++a  +ke  + ++   l   +  +  +l + +   + t++d l   +  l  ++   l++l+   y   +v f++  +  +v+G+a 
  MMETSP1137-20121227|8131_1 132 SNGAFDQDELTRQaVLLVVVG---VALWFGTGIYMGATdIAKVRMMACYKKEYVKSIIRQDLSWFDTNNPSELAPGIGAAMSTIEDGLGnKVMQLFENSGTGLGCLGIAFYYnPWVSFVVVATFpVVMGAAG 260
                 588999999999989999999...6899999999986615678******************************************98751566777788999****98665416898887665426666653 PP

  == domain 2    score: 20.3 bits;  conditional E-value: 5.1e-07
   TIGR01194 334 vdslelkdvrysyk...dvessegfalGpidlriasGelvyivGenGcGkstliklllGlyipqeGellldGeavs 406
                  + +e+kdv ++y+   dv+  +g+      l++  G++v + G+ G Gkst+i l+  +y p  G + +dG  v 
  MMETSP1137-20121227|8131_1 519 RGEIEVKDVYFAYPsapDVQVCNGY-----SLHVPAGQVVALCGQSGSGKSTIINLVERFYDPHRGAVHFDGVDVR 589
                 578999***9988621145555555.....6799**************************************9886 PP

  == domain 3    score: 15.3 bits;  conditional E-value: 1.7e-05
   TIGR01194 468 tdlstGqrkrlalvnayleerpvllldewaadqdpafkrvfy...eellpdlkr...rGktilvishddryfeladrlikladGkvvke 550
                  +ls Gq++r+a+  a + +  vlllde ++  d    r+     +e++ + k+   rG+t + i+h     + +d++  +  G+v++e
  MMETSP1137-20121227|8131_1 662 XKLSGGQKQRVAIARALVRKPAVLLLDEATSALDNESERIVQaalDEIIKEQKKltgRGRTTITIAHRLTTIRNSDKIAVVHRGQVLEE 750
                 579****************************99*999999752226777765544449********************99999999876 PP

>> TIGR01257  rim_protein: rim ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.4   0.0   5.3e-13   3.7e-11     956    1161 ..     550     768 ..     528     786 .. 0.76

  Alignments for each domain:
  == domain 1    score: 38.4 bits;  conditional E-value: 5.3e-13
   TIGR01257  956 nqitaflghngagktttlsiltgllpptsgtvlvggkdiet.nldavrqslgmcpqhnilfhhltvaehilfyaqlkgrswee........aqlemeamledtglhhkrneeaqdlsgglqrklsvaiafvgdakvvvldeptsgvdpysrrsi...wdlllkyr.....sgrtiimsthhmdeadllgdriaiisqgrlycsgtplflkncfgtglyltlvr 1161
                   q+ a+ g+ g+gk+t + ++  +  p  g+v   g d+ t n+  +rq +g++ q   lf   tvae i +       +  +        ++         +    +       lsgg ++++++a a+v    v++lde ts +d  s r +    d ++k +      grt i  +h +       d+ia++ +g++   gt   l +  g   y+ lv 
  MMETSP1137-20121227|8131_1  550 GQVVALCGQSGSGKSTIINLVERFYDPHRGAVHFDGVDVRTlNVSWLRQQIGLVGQEPXLFV-GTVAENIAYGKXXGCDAXGDrxggrxxpTRTXSSXXXCXSXYXTQVGXXGXKLSGGQKQRVAIARALVRKPAVLLLDEATSALDNESERIVqaaLDEIIKEQkkltgRGRTTITIAHRLTTIR-NSDKIAVVHRGQVLEEGTHNALMEKHGV--YFELVE 768 
                  699************************************9878999**************97.59****9865433222222201100000223333334445555666778899***********************************997722246667654223235899999999998664.69****************9999887665..555554 PP

>> TIGR00954  3a01203: peroxysomal long chain fatty acyl transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.0   0.0   0.00065     0.045     445     538 ..     514     620 ..     483     625 .. 0.75
   2 !   27.0   0.0   4.4e-09   3.1e-07     583     621 ..     663     701 ..     657     734 .. 0.87

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 0.00065
   TIGR00954 445 kveaqdngikfeniplvtP..egdvlieeLsfevksGnhlLiiGPnGcGKsslfRilgelW.Pvyg..........glltkpeegklFyvPqrPYmslgtlRdqiiY 538
                 ++++    i + ++  + P   +  + +  s++v+ G+ + ++G  G GKs +  ++  ++ P +g           l     ++++  v q P + +gt+ + i Y
  MMETSP1137-20121227|8131_1 514 TLTQVRGEIEVKDVYFAYPsaPDVQVCNGYSLHVPAGQVVALCGQSGSGKSTIINLVERFYdPHRGavhfdgvdvrTLNVSWLRQQIGLVGQEPXLFVGTVAENIAY 620
                 456667789999999999942234567999************************99999876777788888886532233335788999999999999999988888 PP

  == domain 2    score: 27.0 bits;  conditional E-value: 4.4e-09
   TIGR00954 583 vLsgGekqRiamARlfyHkPkfavLDEctsAvsvdvEdk 621
                  LsgG+kqR+a+AR +  kP   +LDE+tsA+  + E  
  MMETSP1137-20121227|8131_1 663 KLSGGQKQRVAIARALVRKPAVLLLDEATSALDNESERI 701
                 69*****************************99887754 PP

>> TIGR00956  3a01205: pleiotropic drug resistance family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.9   0.0   0.00073     0.051     776     812 ..     537     572 ..     493     621 .. 0.75
   2 !   21.5   0.0   1.2e-07   8.1e-06     895     979 ..     657     745 ..     650     769 .. 0.76

  Alignments for each domain:
  == domain 1    score: 8.9 bits;  conditional E-value: 0.00073
   TIGR00956 776 rvlLdevdGwvkPGkltALmGasGAGkttLlnvLaeR 812
                  ++ +  + +v  G++ AL G+sG Gk t++n + eR
  MMETSP1137-20121227|8131_1 537 VQVCNGYSLHVPAGQVVALCGQSGSGKSTIINLV-ER 572
                 4566666777889******************964.44 PP

  == domain 2    score: 21.5 bits;  conditional E-value: 1.2e-07
   TIGR00956 895 vGvpGeGLnveqRkrltigveLvAkPklllFlDePtsGLDsqtaws.......ivkllrkladaGqailCtiHqPsailleeFDrLLllqkG 979
                 vG  G  L+  q++r++i+  Lv kP  +l lDe ts LD  +  +       i+k  +kl+  G++ +   H    + + + D++ ++++G
  MMETSP1137-20121227|8131_1 657 VGXXGXKLSGGQKQRVAIARALVRKP-AVLLLDEATSALDNESERIvqaaldeIIKEQKKLTGRGRTTITIAHRL--TTIRNSDKIAVVHRG 745
                 99************************.7778*********87654411111236777889999999888777753..334555666665555 PP

>> TIGR00630  uvra: excinuclease ABC subunit A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.6   0.0   0.00071      0.05     627     651 ..     544     568 ..     537     575 .. 0.89
   2 !   19.3   0.1   8.4e-07   5.8e-05     821     900 ..     656     739 ..     652     752 .. 0.81

  Alignments for each domain:
  == domain 1    score: 9.6 bits;  conditional E-value: 0.00071
   TIGR00630 627 dvsiplglltvitGvsgsGkstLin 651
                 ++++p g+++++ G sgsGkst+in
  MMETSP1137-20121227|8131_1 544 SLHVPAGQVVALCGQSGSGKSTIIN 568
                 6899*******************98 PP

  == domain 2    score: 19.3 bits;  conditional E-value: 8.4e-07
   TIGR00630 821 klGqpattLsGGeaqrvkLakeLskrstgktlyilDePttGLhfdD...ikk.Llevl...qrlvdkGntvvviehnldviksaDyi 900
                 ++G     LsGG  qrv +a+ L ++    ++ +lDe t  L  +    ++  L e++   ++l+ +G t + i h l  i+++D i
  MMETSP1137-20121227|8131_1 656 QVGXXGXKLSGGQKQRVAIARALVRK---PAVLLLDEATSALDNESeriVQAaLDEIIkeqKKLTGRGRTTITIAHRLTTIRNSDKI 739
                 68899999***************987...6799*********976533333212234422268999*******************87 PP

>> TIGR00455  apsK: adenylylsulfate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00077     0.053      16      59 ..     548     590 ..     535     606 .. 0.80

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 0.00077
   TIGR00455  16 qksvvlWltGlsgsGkstianalekkLeekglrvevLDGDnvrh 59 
                   + v+ l G sgsGksti n +e+ +++    +  +DG  vr+
  MMETSP1137-20121227|8131_1 548 PAGQVVALCGQSGSGKSTIINLVER-FYDPHRGAVHFDGVDVRT 590
                 5688999*************98876.556666677788888875 PP

>> TIGR00929  VirB4_CagE: type IV secretion/conjugal transfer ATPase, VirB4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   0.0     0.009      0.63     440     457 ..     553     570 ..     543     572 .. 0.82
   2 ?    2.5   0.0     0.098       6.8     627     666 ..     674     716 ..     672     727 .. 0.81

  Alignments for each domain:
  == domain 1    score: 6.0 bits;  conditional E-value: 0.009
   TIGR00929 440 TlIfGptgsGKTvllnfl 457
                 ++++G++gsGK++++n++
  MMETSP1137-20121227|8131_1 553 VALCGQSGSGKSTIINLV 570
                 689************986 PP

  == domain 2    score: 2.5 bits;  conditional E-value: 0.098
   TIGR00929 627 ieealdgrrfliiiDEawkllgdpv...feakikeilktlRKa 666
                 i +al ++++++++DEa + l++++   ++a+ +ei+k  +K 
  MMETSP1137-20121227|8131_1 674 IARALVRKPAVLLLDEATSALDNESeriVQAALDEIIKEQKKL 716
                 5678999****************95333778888888877776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (802 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       274  (0.0667967); expected 82.0 (0.02)
Passed bias filter:                      194  (0.047294); expected 82.0 (0.02)
Passed Vit filter:                        82  (0.0199902); expected 4.1 (0.001)
Passed Fwd filter:                        59  (0.0143832); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              59  [number of targets reported over threshold]
# CPU time: 1.89u 0.19s 00:00:02.08 Elapsed: 00:00:01.11
# Mc/sec: 953.65
//
Query:       MMETSP1137-20121227|8132_1  [L=234]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (234 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        29  (0.00706972); expected 82.0 (0.02)
Passed bias filter:                       27  (0.00658216); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.12s 00:00:00.31 Elapsed: 00:00:00.31
# Mc/sec: 996.30
//
Query:       MMETSP1137-20121227|8133_1  [L=110]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (110 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        35  (0.00853242); expected 82.0 (0.02)
Passed bias filter:                       32  (0.00780107); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.16s 00:00:00.32 Elapsed: 00:00:00.75
# Mc/sec: 193.58
//
Query:       MMETSP1137-20121227|8134_1  [L=206]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (206 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        91  (0.0221843); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.13s 00:00:00.32 Elapsed: 00:00:00.32
# Mc/sec: 849.68
//
Query:       MMETSP1137-20121227|8135_1  [L=308]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.1e-94  314.5   0.0    1.2e-94  314.3   0.0    1.0  1  TIGR00078 nadC: nicotinate-nucleotide diphosphorylase (carboxylating)
    1.2e-18   65.3   0.1    1.6e-18   65.0   0.1    1.0  1  TIGR01334 modD: modD protein
     0.0074   13.5   0.2       0.19    8.9   0.0    2.2  2  TIGR01163 rpe: ribulose-phosphate 3-epimerase


Domain annotation for each model (and alignments):
>> TIGR00078  nadC: nicotinate-nucleotide diphosphorylase (carboxylating)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  314.3   0.0     9e-98   1.2e-94       2     269 .]      24     295 ..      23     295 .. 0.98

  Alignments for each domain:
  == domain 1    score: 314.3 bits;  conditional E-value: 9e-98
   TIGR00078   2 lkealreDvgkedittealvkeeekaeaslvakeegvlaGlevaeevfeelegveveelvkdGeeleage.....vvaelegdarslLlaERvaLNllqrlsgiAtatrklvealretn..vkiadTRKttPglrlleKyavrvGGgdnHRldLsdavliKdNHiaaagsvekavkraraalsfalkievEvesleeaeealeagadiilLDNmkpeeikeavellkekapsvlvEaSGgitldnveeyaetgvdvisvgalthsvkvlDlslki 269
                 ++++l++D++k d+++  +v ++e+++asl+ k+ gvlaG+++a+ vf++l ++ ve+l ++G++++++e      va++ g++r++L+aER+aLN+l+r+sg+Ata+r++++ + e +   k+a+TRKttPg+ ++eKya++vGG+d+HR+dLs +v++KdNHi+ +gs+++ v rar++++f++kievE+ s+++a+ea+eagad+i+LDN k ee+k++++ +k+++p+v++EaSGgit d + +y + +vd+is g+lt+ + +lD+slk+
  MMETSP1137-20121227|8135_1  24 VTRWLEQDMPKWDVGG--YVVGAERTHASLLGKSPGVLAGIPFATFVFTHL-ECXVEWLRDEGHVISEAEakakaPVAKVVGPTRNVLMAERTALNILSRASGVATAARAAMDVAVEHKwhGKVAGTRKTTPGFGIVEKYALLVGGADTHRMDLSAMVMLKDNHIWSTGSISTSVARARSVCGFSTKIEVECTSQQDAQEAAEAGADVIMLDNYKGEELKKVAKVIKAQHPHVIIEASGGITIDAMPSYFSPDVDIISQGSLTNGYDTLDFSLKV 295
                 89*************9..7999*****************************.5*************9998777778*************************************99888889********************************************************************************************************************************************************85 PP

>> TIGR01334  modD: modD protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.0   0.1   1.2e-21   1.6e-18      18     260 ..      34     277 ..      21     282 .. 0.86

  Alignments for each domain:
  == domain 1    score: 65.0 bits;  conditional E-value: 1.2e-21
   TIGR01334  18 rGdlttralgiedqpaeiefkardegivsgvsvaakllkklglsidvavkeG...s..raeaGsllleakgsadklhqgWkavqsvleWsaGvadytdkmvalakkisPaavvactrkaiPltrklaskavlaaGGlihraglsetllvfanhrtllsdnedisgaitrlkqqaP.ekkitveadtlkqalavlradPdilqldkftpqqvkelaellklldknitlavaGGinkenvaeylelGidlf 260
                 + d+    +g e ++a  ++  +  g+ +g+  a+ ++++l+  ++   +eG   s  +a+a + + +  g + ++ ++ +++ ++l  ++Gva+     +  a + + ++ va trk+ P+   +   a+l +G   hr++ls  +++  nh      +  is  ++r +       ki ve  + ++a ++++a  d++ ld +  + +k++a+++k  ++++ + ++GGi  +++  y    +d++
  MMETSP1137-20121227|8135_1  34 KWDVGGYVVGAERTHA--SLLGKSPGVLAGIPFATFVFTHLECXVEWLRDEGhviSeaEAKAKAPVAKVVGPTRNVLMAERTALNILSRASGVATAARAAMDVAVEHKWHGKVAGTRKTTPGFGIVEKYALLVGGADTHRMDLSAMVMLKDNHIWS---TGSISTSVARARSVCGfSTKIEVECTSQQDAQEAAEAGADVIMLDNYKGEELKKVAKVIKAQHPHVIIEASGGITIDAMPSYFSPDVDII 277
                 5555555555555555..5567899******************99998888833321133444445556688899999********************************************************************9999999654...569********99865389***************************************************************99888876 PP

>> TIGR01163  rpe: ribulose-phosphate 3-epimerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.1     0.013        18     166     192 ..     205     230 ..     191     235 .. 0.73
   2 !    8.9   0.0   0.00014      0.19     151     197 ..     237     283 ..     233     295 .. 0.88

  Alignments for each domain:
  == domain 1    score: 2.4 bits;  conditional E-value: 0.013
   TIGR01163 166 eilievDGGvkeeniaevaeaGadvlv 192
                 +++iev+    ++ ++e+aeaGadv++
  MMETSP1137-20121227|8135_1 205 STKIEVEC-TSQQDAQEAAEAGADVIM 230
                 56677765.456778889999999886 PP

  == domain 2    score: 8.9 bits;  conditional E-value: 0.00014
   TIGR01163 151 ekirevrklidekekeilievDGGvkeeniaevaeaGadvlvagsai 197
                 e +++v k+i++++ ++ ie  GG++ +++ +  +  +d++  gs  
  MMETSP1137-20121227|8135_1 237 EELKKVAKVIKAQHPHVIIEASGGITIDAMPSYFSPDVDIISQGSLT 283
                 67899*****************************9999999999976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (308 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       199  (0.0485129); expected 82.0 (0.02)
Passed bias filter:                      133  (0.0324232); expected 82.0 (0.02)
Passed Vit filter:                        18  (0.0043881); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.27u 0.15s 00:00:00.42 Elapsed: 00:00:00.46
# Mc/sec: 883.75
//
Query:       MMETSP1137-20121227|8136_1  [L=155]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.037   11.8   0.2      0.058   11.2   0.1    1.2  1  TIGR02209 ftsL_broad: cell division protein FtsL


Domain annotation for each model (and alignments):
>> TIGR02209  ftsL_broad: cell division protein FtsL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.1   1.4e-05     0.058      55      77 ..      19      40 ..      16      42 .. 0.89

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 1.4e-05
   TIGR02209 55 aelsrheRiekiAkkqLgmklpd 77
                a+ls  eRi+++A+++ g++l +
  MMETSP1137-20121227|8136_1 19 AKLSHAERIARVARDE-GLELAK 40
                89**************.**9976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (155 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        97  (0.023647); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.17u 0.16s 00:00:00.33 Elapsed: 00:00:00.45
# Mc/sec: 454.63
//
Query:       MMETSP1137-20121227|8139_1  [L=529]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        1.3    5.5   8.9        2.7    4.5   6.2    1.5  1  TIGR00806 rfc: reduced folate carrier


Domain annotation for each model (and alignments):
>> TIGR00806  rfc: reduced folate carrier
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   6.2   0.00066       2.7     451     507 ..     219     279 ..     175     283 .. 0.73

  Alignments for each domain:
  == domain 1    score: 4.5 bits;  conditional E-value: 0.00066
   TIGR00806 451 rgreq....elaqaqelrspeeeavqalslqdrdlraaqpsavqlleedatveddradlrv 507
                 +gr+     ++ q+q++++ +++ +q++ lq +++++ qp ++ l ++++t+ +  a+ ++
  MMETSP1137-20121227|8139_1 219 QGRQMallfQQQQQQQQQQQQQQQQQQQRLQQEQRQQLQPATPTLAQQHPTTARAPAQVHL 279
                 3343344434445555557788889999*********************987666555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (529 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       703  (0.17138); expected 82.0 (0.02)
Passed bias filter:                      165  (0.0402243); expected 82.0 (0.02)
Passed Vit filter:                        31  (0.00755729); expected 4.1 (0.001)
Passed Fwd filter:                         8  (0.00195027); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.63u 0.15s 00:00:00.78 Elapsed: 00:00:01.41
# Mc/sec: 495.19
//
Query:       MMETSP1137-20121227|8140_1  [L=386]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0029   13.5   0.0     0.0039   13.1   0.0    1.1  1  TIGR02865 spore_II_E: stage II sporulation protein E


Domain annotation for each model (and alignments):
>> TIGR02865  spore_II_E: stage II sporulation protein E
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.1   0.0   9.4e-07    0.0039     679     763 ..     272     353 ..     269     354 .. 0.64

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 9.4e-07
   TIGR02865 679 iGvldevdvevekkklk.ngDlivlvsDGvlegekeeegkeeWlvkvlkeektndPeeiaeellekal...elrkgkikDDmTvivakv 763
                 iGv+ e  +ev ++ ++ +g ++v+ sDGv e  ++ +   e +  ++  + t      + +l+e a    + ++g  +DD+T i +++
  MMETSP1137-20121227|8140_1 272 IGVIAE--PEVTHRIVNiDGTFLVMASDGVWEFLESDK-AAELVNSFIWSNATD----ACTRLIETAAakwRAEEGDXRDDITAICVRF 353
                 666664..566666665489**********66655522.233444555554444....4555555543112678999********9997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (386 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        85  (0.0207216); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.29u 0.14s 00:00:00.43 Elapsed: 00:00:00.59
# Mc/sec: 863.52
//
Query:       MMETSP1137-20121227|8141_1  [L=662]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.8e-06   22.6   0.5    0.00012   18.9   0.0    2.4  3  TIGR00387 glcD: glycolate oxidase, subunit GlcD
  ------ inclusion threshold ------
      0.036   11.7   0.0      0.067   10.8   0.0    1.3  1  TIGR03096 nitroso_cyanin: nitrosocyanin


Domain annotation for each model (and alignments):
>> TIGR00387  glcD: glycolate oxidase, subunit GlcD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.0   5.9e-08   0.00012       9      80 ..     124     200 ..     117     240 .. 0.78
   2 ?   -2.8   0.0      0.23   4.7e+02     202     222 ..     391     411 ..     387     415 .. 0.86
   3 ?    1.1   0.0     0.015        30     350     382 ..     597     629 ..     576     649 .. 0.75

  Alignments for each domain:
  == domain 1    score: 18.9 bits;  conditional E-value: 5.9e-08
   TIGR00387   9 qvarilklCserrikvvprGagtglsGgalpee......gglvlvfkrlnkileideenltavvqPGvinkeleeave 80 
                 + a +l  C      vv +Ga tgl+Gg+lp e      ++++l ++rl+++  id+  + +  + Gv +++l +++ 
  MMETSP1137-20121227|8141_1 124 EAADVLSQCIASGATVVLQGANTGLTGGSLPREsvertpESVLLNMRRLQRVRVIDQAHQ-VLCEAGVGIASLAKEMR 200
                 6789999************************87444444589999***********9876.56799999998888765 PP

  == domain 2    score: -2.8 bits;  conditional E-value: 0.23
   TIGR00387 202 iiPaalEflDnlsikavedvv 222
                  +Pa +E ++ +++ a+++ +
  MMETSP1137-20121227|8141_1 391 FLPASIEYMNRDAVDAIDEAA 411
                 58**************99976 PP

  == domain 3    score: 1.1 bits;  conditional E-value: 0.015
   TIGR00387 350 erveelleeilelavelgGtisgEHGiGvekae 382
                 +r + + +ei     ++gG + +EHG G+e + 
  MMETSP1137-20121227|8141_1 597 ARIHAIKGEIKAGIENMGGRLPSEHGHGTEYEA 629
                 6888999999777778**********9987655 PP

>> TIGR03096  nitroso_cyanin: nitrosocyanin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   3.3e-05     0.067      91     122 ..     514     546 ..     501     556 .. 0.84

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 3.3e-05
   TIGR03096  91 gikevikagetktis.fkadkagaftiwcqlhp 122
                  i+e   age+kt+s f+   a af +wc  h 
  MMETSP1137-20121227|8141_1 514 RIHEATSAGEAKTLSlFRFVAAAAFKVWCTGHG 546
                 689999********86788999*******9885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (662 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       108  (0.0263286); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.16s 00:00:00.59 Elapsed: 00:00:01.32
# Mc/sec: 661.95
//
Query:       MMETSP1137-20121227|8142_1  [L=108]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (108 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        44  (0.0107265); expected 82.0 (0.02)
Passed bias filter:                       44  (0.0107265); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.12s 00:00:00.27 Elapsed: 00:00:00.28
# Mc/sec: 509.10
//
Query:       MMETSP1137-20121227|8143_1  [L=223]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (223 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        44  (0.0107265); expected 82.0 (0.02)
Passed bias filter:                       44  (0.0107265); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.17s 00:00:00.36 Elapsed: 00:00:00.32
# Mc/sec: 919.80
//
Query:       MMETSP1137-20121227|8144_1  [L=346]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (346 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        74  (0.01804); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.15s 00:00:00.40 Elapsed: 00:00:00.40
# Mc/sec: 1141.71
//
Query:       MMETSP1137-20121227|8145_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        32  (0.00780107); expected 82.0 (0.02)
Passed bias filter:                       31  (0.00755729); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.41
# Mc/sec: 167.40
//
Query:       MMETSP1137-20121227|8146_1  [L=621]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0097   13.3   0.2      0.019   12.4   0.1    1.4  1  TIGR01971 NuoI: NADH-quinone oxidoreductase, chain I


Domain annotation for each model (and alignments):
>> TIGR01971  NuoI: NADH-quinone oxidoreductase, chain I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.4   0.1   4.6e-06     0.019      52     109 ..      52     110 ..      32     119 .. 0.78

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 4.6e-06
   TIGR01971  52 kvCpaeaikvvkaeeekgkrrlkkyeinlgrCifCglCe..evCPtdaivltkefelase 109
                 ++C a   + +++e +++k r+++++i  ++ + C  C   e+CP++++ +  e+e a++
  MMETSP1137-20121227|8146_1  52 AICLAMRKRRNQTEAKEKKERIYRPRISGAKWVACI-CRerEACPVESLWVQAELEAATQ 110
                 4555555555556668888899999******99995.531389*************9985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (621 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       113  (0.0275475); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.17s 00:00:00.57 Elapsed: 00:00:00.39
# Mc/sec: 2101.67
//
Query:       MMETSP1137-20121227|8147_1  [L=214]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.3e-05   21.1   0.0    0.00011   19.7   0.0    1.7  2  TIGR01351 adk: adenylate kinases
    8.4e-05   20.5   0.0    0.00012   20.0   0.0    1.2  1  TIGR02173 cyt_kin_arch: putative cytidylate kinase
    0.00088   16.6   0.1     0.0025   15.1   0.0    1.7  2  TIGR03574 selen_PSTK: L-seryl-tRNA(Sec) kinase
  ------ inclusion threshold ------
      0.012   12.3   0.0      0.019   11.6   0.0    1.3  1  TIGR02928 TIGR02928: orc1/cdc6 family replication initiation protein
      0.018   12.1   0.0      0.031   11.3   0.0    1.3  1  TIGR01420 pilT_fam: twitching motility protein


Domain annotation for each model (and alignments):
>> TIGR01351  adk: adenylate kinases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.0   1.4e-07   0.00011       2      39 ..      57      95 ..      56     117 .. 0.82
   2 ?   -1.9   0.0      0.58   4.8e+02     108     130 ..     142     164 ..     137     182 .. 0.80

  Alignments for each domain:
  == domain 1    score: 19.7 bits;  conditional E-value: 1.4e-07
   TIGR01351  2 lvllGpPGsGKGTqakrlaekl.glvhistGdllRaevk 39
                ++l G PG+GK+  a+ l+ ++ +l+hi  G l+R++  
  MMETSP1137-20121227|8147_1 57 ILLTGTPGTGKSATAAALVARVpQLKHIEVGTLVREKQL 95
                789********8766666555438***********9765 PP

  == domain 2    score: -1.9 bits;  conditional E-value: 0.58
   TIGR01351 108 davielkvpdevlverisgRric 130
                 d v  l+ ++ +l+ r+++R   
  MMETSP1137-20121227|8147_1 142 DLVAVLRADNTILYGRLESRGYS 164
                 67888899999999999999654 PP

>> TIGR02173  cyt_kin_arch: putative cytidylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   0.0   1.4e-07   0.00012       3     118 ..      57     169 ..      56     212 .. 0.69

  Alignments for each domain:
  == domain 1    score: 20.0 bits;  conditional E-value: 1.4e-07
   TIGR02173   3 ivisGpPGsGkt.tvakilaeklslklisaGk.irelaekkgldlaeskkaeeekeiDkkiDrkikeiaekeknvvlesrlagWllkeyaDvkiylkaslevraeriakrenksltea 118
                 i ++G PG+Gk+ t a  +a+  +lk+i  G+ +re   ++g d  e     +  + +++ D+   e a +++ v+l+ + a    +   D+   l+a+  + + r+  r   +++ a
  MMETSP1137-20121227|8147_1  57 ILLTGTPGTGKSaTAAALVARVPQLKHIEVGTlVREKQLHQGWDE-E--FECHILDEERMCDE--LEDAMEAGGVILDFHGADLFPERWFDLVAVLRADNTILYGRLESRGYSEKKLA 169
                 7789*******834566789999*****99952455555555553.2..22222233345554..45677899**********************************99965443322 PP

>> TIGR03574  selen_PSTK: L-seryl-tRNA(Sec) kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0     3e-06    0.0025       2      67 ..      57     123 ..      56     150 .. 0.76
   2 ?   -1.2   0.1      0.29   2.4e+02     157     199 ..     170     212 ..     164     213 .. 0.77

  Alignments for each domain:
  == domain 1    score: 15.1 bits;  conditional E-value: 3e-06
   TIGR03574   2 iiltGlPgvGkstfskelakklseknidviilgtdllre.slpv.Wkekyeefirestl..klikealen 67 
                 i+ltG Pg+Gks+ + +l  ++ +  ++ i +gt l+re +l + W+e++e  i +       +++a+e+
  MMETSP1137-20121227|8147_1  57 ILLTGTPGTGKSATAAALVARVPQ--LKHIEVGT-LVREkQLHQgWDEEFECHILDEERmcDELEDAMEA 123
                 79***********99999887765..78889998.5665245434******9997654311445666665 PP

  == domain 2    score: -1.2 bits;  conditional E-value: 0.29
   TIGR03574 157 neileeileiseeklkvekkkkkkkekkessvekidkltrqiv 199
                 +++  ei+++  ++ +  ++++   e   ++ve++d+   +iv
  MMETSP1137-20121227|8147_1 170 ENVEAEIMQVILDEARGAYPEEAVVELASNTVEDLDSNVSRIV 212
                 4577788888888888888888888888889999888877776 PP

>> TIGR02928  TIGR02928: orc1/cdc6 family replication initiation protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   2.3e-05     0.019      38      64 ..      52      78 ..      44      91 .. 0.84

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 2.3e-05
   TIGR02928 38 srpsnvliyGktGtGKtavtkkvlkel 64
                ++++++l+ G +GtGK+a++ +++ ++
  MMETSP1137-20121227|8147_1 52 REAPEILLTGTPGTGKSATAAALVARV 78
                46789***************9998876 PP

>> TIGR01420  pilT_fam: twitching motility protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   3.7e-05     0.031     124     151 ..      56      83 ..      42      90 .. 0.83

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 3.7e-05
   TIGR01420 124 lilvtGptGsGKsttlAslidyinkeka 151
                  il+tG  G GKs t A+l+  + + k+
  MMETSP1137-20121227|8147_1  56 EILLTGTPGTGKSATAAALVARVPQLKH 83 
                 59******************98876655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (214 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       177  (0.0431497); expected 82.0 (0.02)
Passed bias filter:                      162  (0.0394929); expected 82.0 (0.02)
Passed Vit filter:                        45  (0.0109703); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.25u 0.16s 00:00:00.41 Elapsed: 00:00:00.39
# Mc/sec: 724.25
//
Query:       MMETSP1137-20121227|8148_1  [L=50]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (50 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        75  (0.0182838); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.17s 00:00:00.28 Elapsed: 00:00:00.27
# Mc/sec: 244.42
//
Query:       MMETSP1137-20121227|8149_1  [L=455]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (455 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        64  (0.0156021); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.17s 00:00:00.47 Elapsed: 00:00:00.39
# Mc/sec: 1539.87
//
Query:       MMETSP1137-20121227|8151_1  [L=172]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (172 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        63  (0.0153584); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.16s 00:00:00.32 Elapsed: 00:00:00.34
# Mc/sec: 667.71
//
Query:       MMETSP1137-20121227|8152_1  [L=634]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.5e-23   78.7   0.2    1.8e-19   67.7   0.0    3.0  2  TIGR00475 selB: selenocysteine-specific translation elongation factor
      8e-19   65.2   0.6    1.9e-18   63.9   0.4    1.5  1  TIGR00483 EF-1_alpha: translation elongation factor EF-1, subunit alpha
    3.8e-10   37.3   1.6    4.6e-09   33.8   1.1    2.3  1  TIGR03680 eif2g_arch: translation initiation factor 2, gamma subunit
    5.9e-09   33.8   0.0    1.5e-08   32.5   0.0    1.6  1  TIGR00231 small_GTP: small GTP-binding protein domain
    9.5e-09   32.6   1.0    3.3e-08   30.8   0.2    1.9  2  TIGR02034 CysN: sulfate adenylyltransferase, large subunit
    1.6e-08   31.5   6.2    5.6e-07   26.4   4.3    2.7  1  TIGR00485 EF-Tu: translation elongation factor Tu
    5.2e-08   29.9   0.7    9.1e-08   29.1   0.1    1.6  2  TIGR00487 IF-2: translation initiation factor IF-2
    5.8e-06   23.4   0.0      0.026   11.4   0.0    2.2  2  TIGR03594 GTPase_EngA: ribosome-associated GTPase EngA
     0.0002   19.0   0.0      0.038   11.5   0.0    2.3  2  TIGR03598 GTPase_YsxC: ribosome biogenesis GTP-binding protein YsxC
      0.003   15.7   0.0        3.2    5.8   0.0    3.1  3  TIGR02528 EutP: ethanolamine utilization protein, EutP
     0.0035   14.1   0.0       0.48    7.0   0.0    2.4  2  TIGR03918 GTP_HydF: [FeFe] hydrogenase H-cluster maturation GTPase HydF
     0.0043   13.3   0.1       0.02   11.1   0.0    1.8  2  TIGR00491 aIF-2: translation initiation factor aIF-2
  ------ inclusion threshold ------
      0.011   12.0   0.0      0.018   11.3   0.0    1.3  1  TIGR00503 prfC: peptide chain release factor 3
      0.036   10.2   0.0        0.2    7.7   0.0    2.0  2  TIGR01393 lepA: GTP-binding protein LepA


Domain annotation for each model (and alignments):
>> TIGR00475  selB: selenocysteine-specific translation elongation factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.0     0.041        12       3      22 ..     215     234 ..     213     240 .. 0.91
   2 !   67.7   0.0   6.2e-22   1.8e-19      43     260 ..     289     541 ..     287     606 .. 0.72

  Alignments for each domain:
  == domain 1    score: 2.2 bits;  conditional E-value: 0.041
   TIGR00475   3 iataGHvDHGKttLlkaltg 22 
                 +a+ G vD GK tL+  ltg
  MMETSP1137-20121227|8152_1 215 VAVVGNVDAGKSTLVGVLTG 234
                 899****************8 PP

  == domain 2    score: 67.7 bits;  conditional E-value: 6.2e-22
   TIGR00475  43 aylpled..kvlgliDvPGHekflknalagvggi..daalLvvdadeGvkaqtkEHLavlkllgikelivvltKaDrvdeeevkevEeelkeile...............e.....eeflkn..akivkvsAktGqGieeLkkelknLlesldak.dkqkplrlaiDraFkvKGaGtvvtGtafsGevkvgDelvlepink....kvrvkalqaqnqsvekavAGqRialnla.....dvdkeklkRGllilkp 260
                 a l++ +  kv+ +iD  GHe++l++ + g+++   d++++vv a+ G+   tkEH+ ++  l ++ l vv+tK+D   e  +ke+ + l ++l+               e      +f +   + ++ +s ++G  +  L++ ++ ++ +     +k+ p  + iD+ F+v G+G+vv Gt  sG v  +  l + p n+    +v v++++  +  v+    Gq  a+ +       v    +++G++ l+p
  MMETSP1137-20121227|8152_1 289 AALDQSEtaKVVSFIDLAGHERYLRTTVYGLTAHepDYVMVVVGANHGITRMTKEHVGMAIALHVP-LFVVVTKVDLCPEPVMKETMKSLTRLLKlpgarkqpyvvrtldElmvavRSFGRTaiTPVFTISSVDGTNVPLLRQFFNLMPSRRAWVnQKDMPAEFLIDQHFNVPGVGLVVAGTLISGVVALNHVLLMGPDNQgkfnPVTVRSIHHMRAAVHALLPGQTGAFVVRsrtxdHVRSXGIRKGMVLLEP 541
                 5666666679********************9875338*****************************.99********99999888888877776522222111111111111111112222211357999***********998877777766554778899**********************************99997545479*********99999999988777664221123444456666544444 PP

>> TIGR00483  EF-1_alpha: translation elongation factor EF-1, subunit alpha
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.9   0.4   6.6e-21   1.9e-18       8     381 ..     213     616 ..     207     632 .. 0.66

  Alignments for each domain:
  == domain 1    score: 63.9 bits;  conditional E-value: 6.6e-21
   TIGR00483   8 lnvafighvdsgkstlvgrl......lyeagaiderlleklkkeaeekgkasfefayvldklkeererg..vtid.....vahkkfetdkyevtivdapghrdfiknmitgasqada..avlvvavddgelevqpqtrehvllartlgikqlivainkmdsvnydeekfeelkkevsellkkvg.....ykpdeve..fipvsaykgdnvvkksenapwyk.......gktllealdkleapek....pvdkplripiqdvysitgvgtvpvgrvetgvlkkgekvvfepa..gvsg..evksiemhheqieqaepgdnigfnvrg.....vskkdirrgdvagdadnppkvakeftaqivvlqhpgaitvgytpvldahtaqvacrfvellkkldprtg......kvkeenpkflktgdaa 381
                 l va++g vd+gkstlvg l      l +  ++++  + + k+eae  g++s       d+      rg  ++++      a+ + et k  v+ +d  gh  +++  + g +  +    ++vv ++    +++  t+ehv +a +l +  l v + k+d     e  ++e  k +++llk  g     y + +++  ++ v ++       ++  +p +           ll  + +l +  +      d+p  + i++ +++ gvg v  g + +gv+   +++++ p   g      v+si      ++   pg+   f vr+     v    ir+g v  ++   p ++k+ft +++vl+  +++ v y p++ a   +   r+  +  k   rtg           +p+fl+ g   
  MMETSP1137-20121227|8152_1 213 LRVAVVGNVDAGKSTLVGVLtgptsfLDDGRGLARSRVLRHKHEAE-TGRTSSI---AEDQHMRLNTRGqcLAMErhqrhAALDQSETAK-VVSFIDLAGHERYLRTTVYGLTAHEPdyVMVVVGAN---HGITRMTKEHVGMAIALHVP-LFVVVTKVDLC--PEPVMKETMKSLTRLLKLPGarkqpYVVRTLDelMVAVRSFG------RTAITPVFTissvdgtNVPLLRQFFNLMPSRRawvnQKDMPAEFLIDQHFNVPGVGLVVAGTLISGVVALNHVLLMGPDnqGKFNpvTVRSIHHMRAAVHALLPGQTGAFVVRSrtxdhVRSXGIRKGMVLLEPSMNPVATKSFTCDVLVLHSQTTMRVNYQPIVYARNVRQCVRIAAMD-KEILRTGvrarvtLEFMYRPEFLQPGTKV 616
                 689***************9922222122333455555555666665.4554432...223333333333003332111114556667777.4899**************997655440044444444...4699**************97.677799***97..578889999999****99883222244445542223334443......4444444444444433234666666665555422225789***********************************9996224444115667666667899999*********97333335667799****************************************99877555544443.33334441110002233567777777655 PP

>> TIGR03680  eif2g_arch: translation initiation factor 2, gamma subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.8   1.1   1.6e-11   4.6e-09       5     172 ..     212     389 ..     209     562 .. 0.79

  Alignments for each domain:
  == domain 1    score: 33.8 bits;  conditional E-value: 1.6e-11
   TIGR03680   5 evniglvGhvDhGkttlvkaltG.............vwtdthseelkrgisiklGyad.aeikkceeceepeaytteekceecgsetellrkvsfvDaPGhetLmatmlsGaalm..dgalLviaaneevPqpqtkehlvaleiigiknivivqnkidlvskekalenyeeikefvkgtvaena 172
                 ++ +++vG vD Gk+tlv  ltG               + +h+ e   g +  +   + + + +  +c + e+  ++       +++e+ + vsf+D  Ghe  + t + G +    d  ++v+ an+ +    tkeh+     + +  +v+   k+dl  +  + e  + + +++k   a + 
  MMETSP1137-20121227|8152_1 212 DLRVAVVGNVDAGKSTLVGVLTGptsflddgrglarSRVLRHKHEAETGRTSSIAEDQhMRLNTRGQCLAMERHQRHA----ALDQSETAKVVSFIDLAGHERYLRTTVYGLTAHepDYVMVVVGANHGI-TRMTKEHVGMAIALHVPLFVV-VTKVDLCPEPVMKETMKSLTRLLKLPGARKQ 389
                 57899*****************94322222211111122334444444433333221102222222222222222222....223567999******************9966542278899999**999.789****98777777766655.57****9998888888888888876665555 PP

>> TIGR00231  small_GTP: small GTP-binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.5   0.0     5e-11   1.5e-08       4     131 ..     213     373 ..     211     389 .. 0.84

  Alignments for each domain:
  == domain 1    score: 32.5 bits;  conditional E-value: 5e-11
   TIGR00231   4 ikivivGhvdvGKstLlnsllknkisiteskpgvtrdyvteqieedGkt......................................ykvnllDTaGqedfdairrlyvreverslevvdivilvldveeglekqtkeiiheakkkgvpiilvvnKiDlkd..dlktk 131
                  ++++vG vd+GKstL   l++ + s   ++ g  r+ v + ++ + +t                                      + v ++D+aG+e++     l+++     + + d v+ v+ ++ g ++ tke    a +  vp+ +vv+K+Dl     +k+ 
  MMETSP1137-20121227|8152_1 213 LRVAVVGNVDAGKSTLVGVLTGPT-SFLDDGRGLARSRVLR-HKHEAETgrtssiaedqhmrlntrgqclamerhqrhaaldqsetaKVVSFIDLAGHERY-----LRTTVYGLTAHEPDYVMVVVGANHGITRMTKEHVGMAIALHVPLFVVVTKVDLCPepVMKET 373
                 579*********************.7777778777766554.4444444445**********************************99*************.....5555555567889***************************************9775544444 PP

>> TIGR02034  CysN: sulfate adenylyltransferase, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.8   0.2   1.1e-10   3.3e-08       1     146 [.     213     365 ..     213     381 .. 0.71
   2 ?   -0.3   0.0      0.31        91     236     322 ..     467     564 ..     441     593 .. 0.67

  Alignments for each domain:
  == domain 1    score: 30.8 bits;  conditional E-value: 1.1e-10
   TIGR02034   1 lrfltcGsvddGkstliGrllhdtkqiledqlaalerdskkkgtegeei.dlallvdG..lqaereqgitidvayryfstdkrk....fivadtPGheqytrnmatgasta..dlavllvdarkGvleqtrrhsiiasllGikhvvlavnkidlv 146
                 lr+  +G+vd Gkstl+G l   t  + + +    ++   ++++e e+    ++  d       r q ++++   r+ + d+ +        d  Ghe+y r ++ g ++   d ++++v a +G+++ t+ h  +a  l +  +v+ v k+dl 
  MMETSP1137-20121227|8152_1 213 LRVAVVGNVDAGKSTLVGVLTGPTSFLDDGR-GLARSRVLRHKHEAETGrTSSIAEDQhmRLNTRGQCLAMERHQRHAALDQSEtakvVSFIDLAGHERYLRTTVYGLTAHepDYVMVVVGANHGITRMTKEHVGMAIALHVPLFVV-VTKVDLC 365
                 788999************8877766655544.333333333333333330333333431133578899999988888877664311112346*************99665422899************************9987765.8999996 PP

  == domain 2    score: -0.3 bits;  conditional E-value: 0.31
   TIGR02034 236 aGtiasGsvkvGdevvvlpsgre....srvarivtfdgelekaeaGeavtlvle....dei...disrGdllaaadeapevadqfaaelvwladeall 322
                 aGt+ sG v+  + + + p+++       v +i  +   +++   G++ ++v++    d++    i +G +l +   +p ++++f+ +++ l+ ++ +
  MMETSP1137-20121227|8152_1 467 AGTLISGVVALNHVLLMGPDNQGkfnpVTVRSIHHMRAAVHALLPGQTGAFVVRsrtxDHVrsxGIRKGMVLLEPSMNPVATKSFTCDVLVLHSQTTM 564
                 67777777777777777776543111145667777777777777777654444311112222225889999999999999999999999999877644 PP

>> TIGR00485  EF-Tu: translation elongation factor Tu
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.4   4.3   1.9e-09   5.6e-07      67     393 ..     290     633 ..     206     634 .] 0.67

  Alignments for each domain:
  == domain 1    score: 26.4 bits;  conditional E-value: 1.9e-09
   TIGR00485  67 hveyetekrhyahvdcpghadyvknmitg..aaqmdgailvvsaadgpmpqtrehillarqvgvpklvvflnkvdlvddeellelvelevrellseydfpgd.dvp.ivrg..salkale..................gdaeweekilelmeavdeyiptperevdkpfllaiedvfsitgrgtvvtgrvergevkvgeeveivglketkk...ttvtgvemfkklldeakagdnvgvllrg.....vkkeeiergqvlakpgsi.kphkkfeaevyvlkkeeggrhtpffsgyrpqfylrttdvtgkielpegvemvlpgdnvkltveli.spvaleeglrfaireggrtvgagvvskil 393
                  ++ +   +  + +d  gh  y++  + g  a + d  ++vv a  g    t+eh+ +a  + vp +vv + kvdl  +  + e ++  +  ll+   +pg  + p +vr     + a+                   ++     + ++lm +  +++++     d p  + i++ f + g g vv+g +  g+v + ++v ++g  ++ k    tv  +  ++  ++    g+    ++r      v+   i++g+vl  p+    + k f ++v vl+ +     t++  +y+p  y r       i+  ++ e++  g + ++t+e++  p  l+ g++    eg +t   g++ ++l
  MMETSP1137-20121227|8152_1 290 ALDQSETAKVVSFIDLAGHERYLRTTVYGltAHEPDYVMVVVGANHGITRMTKEHVGMAIALHVPLFVV-VTKVDLCPEPVMKETMKS-LTRLLK---LPGArKQPyVVRTldELMVAVRsfgrtaitpvftissvdgTNVPLLRQFFNLMPSRRAWVNQ----KDMPAEFLIDQHFNVPGVGLVVAGTLISGVVAL-NHVLLMGPDNQGKfnpVTVRSIHHMRAAVHALLPGQTGAFVVRSrtxdhVRSXGIRKGMVLLEPSMNpVATKSFTCDVLVLHSQ-----TTMRVNYQPIVYARNVRQCVRIAA-MDKEILRTGVRARVTLEFMyRPEFLQPGTKVLFTEG-KTKAIGTIRELL 633
                 33444455667789*************99545567889999999*********************8877.689**9998877776554.333433...33321222122211111122223434444566644443332333445556666666666543....34455556899******************9987.57889998755442227899999999999998888888888876222225566789********865145678********986.....556689********9887777764.5689999*********98736888999999988885.788888887776 PP

>> TIGR00487  IF-2: translation initiation factor IF-2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0         2     6e+02      90     106 ..     215     231 ..     214     233 .. 0.86
   2 !   29.1   0.1   3.1e-10   9.1e-08     131     199 ..     294     364 ..     285     381 .. 0.86

  Alignments for each domain:
  == domain 1    score: -3.3 bits;  conditional E-value: 2
   TIGR00487  90 vtimGhvDhGktsLLds 106
                 v+++G vD Gk +L+ +
  MMETSP1137-20121227|8152_1 215 VAVVGNVDAGKSTLVGV 231
                 7899*********9865 PP

  == domain 2    score: 29.1 bits;  conditional E-value: 3.1e-10
   TIGR00487 131 kedkkkitflDtPGheaf..tsmrarGakvtDivvlvvaadDGvkpqtieaiehakaanvPiivainkiDk 199
                  e  k+++f+D  Ghe +  t++    a+  D v++vv a+ G+ + t+e +  a a +vP+ v++ k+D 
  MMETSP1137-20121227|8152_1 294 SETAKVVSFIDLAGHERYlrTTVYGLTAHEPDYVMVVVGANHGITRMTKEHVGMAIALHVPLFVVVTKVDL 364
                 466789**********994455666668999***************************************6 PP

>> TIGR03594  GTPase_EngA: ribosome-associated GTPase EngA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.4   0.0   8.7e-05     0.026     175     198 ..     212     235 ..     172     255 .. 0.77
   2 !    9.6   0.0   0.00029     0.086     258     317 ..     324     382 ..     312     392 .. 0.87

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 8.7e-05
   TIGR03594 175 pikiaiiGrpNvGKStLvNallge 198
                  +++a++G   +GKStLv  l+g 
  MMETSP1137-20121227|8152_1 212 DLRVAVVGNVDAGKSTLVGVLTGP 235
                 589999999999999999988875 PP

  == domain 2    score: 9.6 bits;  conditional E-value: 0.00029
   TIGR03594 258 advvllvlDategiseqDlkiaglileegkalvivvNKwDlvkdekeleelkkeleeklk 317
                  d v++v+ a++gi++  ++ +g+++  + +l +vv K+Dl+  e  ++e+ k+l++ lk
  MMETSP1137-20121227|8152_1 324 PDYVMVVVGANHGITRMTKEHVGMAIALHVPLFVVVTKVDLC-PEPVMKETMKSLTRLLK 382
                 5779999***********************************.88888888887776655 PP

>> TIGR03598  GTPase_YsxC: ribosome biogenesis GTP-binding protein YsxC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   0.0     0.014         4      19      40 ..     213     234 ..     197     239 .. 0.85
   2 !   11.5   0.0   0.00013     0.038     103     161 ..     326     384 ..     313     399 .. 0.88

  Alignments for each domain:
  == domain 1    score: 4.9 bits;  conditional E-value: 0.014
   TIGR03598  19 peiafaGrSNvGKSsliNaLtn 40 
                   +a++G   +GKS+l+ +Lt+
  MMETSP1137-20121227|8152_1 213 LRVAVVGNVDAGKSTLVGVLTG 234
                 579**************99997 PP

  == domain 2    score: 11.5 bits;  conditional E-value: 0.00013
   TIGR03598 103 gvvllvDirhelkelDlellellkeakipvlvvltKaDklkkselkkalkkvkkelkke 161
                  v+++v + h+++++ +e + ++ + ++p++vv+tK+D + +  +k+++k++++ lk  
  MMETSP1137-20121227|8152_1 326 YVMVVVGANHGITRMTKEHVGMAIALHVPLFVVVTKVDLCPEPVMKETMKSLTRLLKLP 384
                 68999****************************************99999999887765 PP

>> TIGR02528  EutP: ethanolamine utilization protein, EutP
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   0.0     0.011       3.2       2      22 ..     214     234 ..     213     238 .. 0.91
   2 ?    5.6   0.0     0.013       3.8      58     119 ..     319     386 ..     301     403 .. 0.71
   3 ?    0.1   0.0      0.66   1.9e+02     112     140 ..     404     432 ..     391     434 .. 0.80

  Alignments for each domain:
  == domain 1    score: 5.8 bits;  conditional E-value: 0.011
   TIGR02528   2 rimliGsvgcGkttLtqaLkg 22 
                 r++++G+v++Gk tL+  L+g
  MMETSP1137-20121227|8152_1 214 RVAVVGNVDAGKSTLVGVLTG 234
                 899************999877 PP

  == domain 2    score: 5.6 bits;  conditional E-value: 0.013
   TIGR02528  58 vtaadadvivlvqsatdeesllspgfasifak...eviglvtkidlaeadkeierak...elLeeaga 119
                  ta + d +++v +a++  ++++ +   +      +   +vtk+dl  +++  e  k   +lL+  ga
  MMETSP1137-20121227|8152_1 319 LTAHEPDYVMVVVGANHGITRMTKEHVGMAIAlhvPLFVVVTKVDLCPEPVMKETMKsltRLLKLPGA 386
                 47889999999*******999998877665543258899*******9876655443311155665555 PP

  == domain 3    score: 0.1 bits;  conditional E-value: 0.66
   TIGR02528 112 elLeeagaekiFeissvdekgleelvdyL 140
                 +    +  +++F+issvd + +  l+++ 
  MMETSP1137-20121227|8152_1 404 RSFGRTAITPVFTISSVDGTNVPLLRQFF 432
                 5555667899**********999988886 PP

>> TIGR03918  GTP_HydF: [FeFe] hydrogenase H-cluster maturation GTPase HydF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   0.0      0.01         3       8      29 ..     213     234 ..     207     243 .. 0.89
   2 !    7.0   0.0    0.0016      0.48      84     146 ..     321     383 ..     302     413 .. 0.76

  Alignments for each domain:
  == domain 1    score: 4.4 bits;  conditional E-value: 0.01
   TIGR03918   8 lhialfGrrNaGKSsliNaltg 29 
                 l++a++G+  aGKS+l+  ltg
  MMETSP1137-20121227|8152_1 213 LRVAVVGNVDAGKSTLVGVLTG 234
                 689**************99997 PP

  == domain 2    score: 7.0 bits;  conditional E-value: 0.0016
   TIGR03918  84 lektdlallvvdaeaeleeleeelleelkekkipvivvlnkidlkeeekekeklekkkeeevv 146
                  ++ d +++vv a+++++++ +e +  + + ++p+ vv++k+dl+ e   ke++++ ++  ++
  MMETSP1137-20121227|8152_1 321 AHEPDYVMVVVGANHGITRMTKEHVGMAIALHVPLFVVVTKVDLCPEPVMKETMKSLTRLLKL 383
                 4567999**************************************998666666555555444 PP

>> TIGR00491  aIF-2: translation initiation factor aIF-2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.0      0.22        66       7      21 ..     215     229 ..     213     238 .. 0.89
   2 !   11.1   0.0   6.9e-05      0.02      72     144 ..     301     375 ..     288     401 .. 0.83

  Alignments for each domain:
  == domain 1    score: -0.5 bits;  conditional E-value: 0.22
   TIGR00491   7 vavlGhvdhGkttll 21 
                 vav+G vd Gk+tl+
  MMETSP1137-20121227|8152_1 215 VAVVGNVDAGKSTLV 229
                 89***********97 PP

  == domain 2    score: 11.1 bits;  conditional E-value: 6.9e-05
   TIGR00491  72 lvidtPGheaftslrkrG..GaladiailvvdineGfkpqtveavnilrqlktPfvvaankidripGwkskegkf 144
                  +id  Ghe +      G      d  ++vv  n G+ + t+e v +   l++P+ v   k+d+ p    ke+  
  MMETSP1137-20121227|8152_1 301 SFIDLAGHERYLRTTVYGltAHEPDYVMVVVGANHGITRMTKEHVGMAIALHVPLFVVVTKVDLCPEPVMKETMK 375
                 589******9855555551144579***************************************99888877765 PP

>> TIGR00503  prfC: peptide chain release factor 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   6.1e-05     0.018      78     144 ..     296     364 ..     262     387 .. 0.84

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 6.1e-05
   TIGR00503  78 rdklvnlldtpGhedfsedtyrtltav..dsalmvidaakGveertrkllevtrlrdlpiltflnkldr 144
                   k+v ++d  Ghe +   t   lta   d +++v+ a +G+   t+  + ++   ++p++  + k+d 
  MMETSP1137-20121227|8152_1 296 TAKVVSFIDLAGHERYLRTTVYGLTAHepDYVMVVVGANHGITRMTKEHVGMAIALHVPLFVVVTKVDL 364
                 6799*********************97446788889999***************************995 PP

>> TIGR01393  lepA: GTP-binding protein LepA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   0.0    0.0007       0.2      65     139 ..     293     370 ..     214     388 .. 0.73
   2 ?   -0.6   0.0      0.24        70     158     264 ..     415     524 ..     406     530 .. 0.71

  Alignments for each domain:
  == domain 1    score: 7.7 bits;  conditional E-value: 0.0007
   TIGR01393  65 kdgeeyvlnlidtPGhvdfsyevsrslaaceG..alllvdaaqGveaqtlanvylalekdleiiPvinkidl.Psadv 139
                 + ++  v+ +id  Gh  +       l+a e   ++++v a  G+   t  +v +a+   + +  v+ k+dl P   +
  MMETSP1137-20121227|8152_1 293 QSETAKVVSFIDLAGHERYLRTTVYGLTAHEPdyVMVVVGANHGITRMTKEHVGMAIALHVPLFVVVTKVDLcPEPVM 370
                 334556899**********999999***99863378999********************************9444444 PP

  == domain 2    score: -0.6 bits;  conditional E-value: 0.24
   TIGR01393 158 ilvsaktGigieelleaivkkvpaPkg...dkeaplkalifdsvyd.ayrGvvvyvrvveGkikkgdkikllstgkeyeveevgvltpkl..vkeeelkaGevGyliagikdv 264
                  ++s+ +G+++  ll++  + +p+ +    +k+ p + +++d +++ +  G+vv   +++G ++ + ++ l+  +++ + + v v+++++  ++ ++l  G+ G +++  ++ 
  MMETSP1137-20121227|8152_1 415 FTISSVDGTNVP-LLRQFFNLMPSRRAwvnQKDMPAE-FLIDQHFNvPGVGLVVAGTLISGVVALN-HVLLMGPDNQGKFNPVTVRSIHHmrAAVHALLPGQTGAFVVRSRTX 524
                 567778888875.778888888876652113334444.5568888734689999999****99875.6889998888888888888776633567789999999988766655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (634 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       207  (0.0504632); expected 82.0 (0.02)
Passed bias filter:                      169  (0.0411994); expected 82.0 (0.02)
Passed Vit filter:                        46  (0.011214); expected 4.1 (0.001)
Passed Fwd filter:                        14  (0.00341297); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.76u 0.14s 00:00:00.90 Elapsed: 00:00:01.00
# Mc/sec: 836.81
//
Query:       MMETSP1137-20121227|8153_1  [L=324]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (324 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       108  (0.0263286); expected 82.0 (0.02)
Passed bias filter:                      100  (0.0243784); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.16s 00:00:00.42 Elapsed: 00:00:00.44
# Mc/sec: 971.92
//
Query:       MMETSP1137-20121227|8154_1  [L=289]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (289 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       180  (0.043881); expected 82.0 (0.02)
Passed bias filter:                      104  (0.0253535); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.12s 00:00:00.37 Elapsed: 00:00:00.38
# Mc/sec: 1003.81
//
Query:       MMETSP1137-20121227|8155_1  [L=426]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   5.6e-132  438.1   9.2   6.4e-132  437.9   6.4    1.0  1  TIGR01016 sucCoAbeta: succinate-CoA ligase, beta subunit


Domain annotation for each model (and alignments):
>> TIGR01016  sucCoAbeta: succinate-CoA ligase, beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  437.9   6.4  1.6e-135  6.4e-132       1     385 [.      32     422 ..      32     423 .. 0.97

  Alignments for each domain:
  == domain 1    score: 437.9 bits;  conditional E-value: 1.6e-135
   TIGR01016   1 mklheyqakellakygipvpegavatsveeveeiaeelgakkvvvkaqvhaGGRG....k...aGGvkvakskeellkaaeellgkelktfqtakegekvekilieekveiekeyYlsiviDRkakkvviilsaeGGvdieevaeksPekilkvaidpkkgllpyqlRelakkleleselvkqvaeiikklykiflekdaslveinPLvltkdGnlvalDakleiDdnalfrhkdleeledesqedkleveakklglsyvkldGnigvlvnGaGlalatlDiiklyggkpanFLDvGGgaseervkealklvlsdksvkvvlinifGGivrcdevakGlvealkevevkvpvvvRleGtnveeGkkileesgln.ieiaesleeaaekavela 385
                 ++lheyq+ +l+a++g++vp g  a+svee+  +a+++g ++vv+k+q++aGGRG    k   +GGv+v+k ++++++ a+++lg +l+t q+++eg++v+ +l+ +k+++ ke+Y+si++DR++  +++++ aeGG  ie++a++sPek +kv +d + g+++ ++ +++  le++++++k + + ik+lyk+f++ d ++ve+nPL   ++G+l+a+Dak+ +Ddna fr++ + + +d+sqed++ev a k++l+yv ldGnig++vnGaGla+at+Dii  ygg+panFLDvGGga++e++  a+k++ +d+ vk++linifGGi++cd++a+G+v+a+kev+ k+p+vvRleGtnv+ Gkki+e sgl  +++a++l +aa+kav+++
  MMETSP1137-20121227|8155_1  32 LNLHEYQSAQLMAEKGVNVPVGIPAHSVEEAVAAAQKIGDDEVVIKSQILAGGRGlgtfKsgfKGGVHVIK-TSQVAEYASKMLGXHLVTKQSGPEGKPVNTVLLAKKMKLVKEMYFSIMLDRTSMGPLMVACAEGGTSIEDLAHSSPEKXIKVPVDINVGITDAEAMKVVEGLEVSGDKTKAMDQ-IKALYKLFVDLDCTMVEVNPLAEDENGELLAADAKVGFDDNAAFRQPAIFSKRDTSQEDPREVAADKWDLNYVGLDGNIGCMVNGAGLAMATMDIIAAYGGQPANFLDVGGGAKSEQISAAFKIITADDRVKAILINIFGGIMKCDVIAEGVVSAVKEVGLKIPLVVRLEGTNVDLGKKIIETSGLSgVIAADDLDDAAQKAVAAM 422
                 58****************************************************85555333379****99.889********************************************************************************************************9999988.599**************************************************************************************************************************************************************************************76488999**********876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (426 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       169  (0.0411994); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.32u 0.16s 00:00:00.48 Elapsed: 00:00:00.41
# Mc/sec: 1371.40
//
Query:       MMETSP1137-20121227|8157_1  [L=394]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (394 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        86  (0.0209654); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.15s 00:00:00.43 Elapsed: 00:00:00.33
# Mc/sec: 1575.87
//
Query:       MMETSP1137-20121227|8158_1  [L=687]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (687 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       264  (0.0643588); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.13s 00:00:00.56 Elapsed: 00:00:00.89
# Mc/sec: 1018.84
//
Query:       MMETSP1137-20121227|8159_1  [L=147]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (147 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        74  (0.01804); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.11s 00:00:00.27 Elapsed: 00:00:00.52
# Mc/sec: 373.12
//
Query:       MMETSP1137-20121227|8160_1  [L=242]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (242 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       168  (0.0409556); expected 82.0 (0.02)
Passed bias filter:                       99  (0.0241346); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.16s 00:00:00.37 Elapsed: 00:00:01.01
# Mc/sec: 316.25
//
Query:       MMETSP1137-20121227|8161_1  [L=194]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (194 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        68  (0.0165773); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.12s 00:00:00.31 Elapsed: 00:00:00.30
# Mc/sec: 853.53
//
Query:       MMETSP1137-20121227|8162_1  [L=477]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (477 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        74  (0.01804); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.15s 00:00:00.46 Elapsed: 00:00:00.51
# Mc/sec: 1234.49
//
Query:       MMETSP1137-20121227|8163_1  [L=225]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (225 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        68  (0.0165773); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.15s 00:00:00.34 Elapsed: 00:00:00.26
# Mc/sec: 1142.21
//
Query:       MMETSP1137-20121227|8164_1  [L=509]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   1.6e-187  621.7   0.3   1.8e-187  621.5   0.2    1.0  1  TIGR01302 IMP_dehydrog: inosine-5'-monophosphate dehydrogenase
    6.6e-60  201.1   1.0    8.7e-60  200.8   0.7    1.0  1  TIGR01303 IMP_DH_rel_1: IMP dehydrogenase family protein
    1.1e-33  114.5   1.0    4.9e-31  105.8   0.4    2.2  2  TIGR01305 GMP_reduct_1: guanosine monophosphate reductase
    1.2e-31  108.1   0.6    6.7e-22   76.0   0.7    2.3  2  TIGR01304 IMP_DH_rel_2: IMP dehydrogenase family protein
    1.5e-27   94.8   0.6    9.2e-26   88.9   0.1    2.1  2  TIGR01306 GMP_reduct_2: guanosine monophosphate reductase
    2.2e-09   34.9   0.4    0.00059   17.0   0.6    2.2  2  TIGR03151 enACPred_II: putative enoyl-[acyl-carrier-protein] reductase II
    0.00031   18.0   0.6       0.27    8.4   0.0    2.5  2  TIGR03572 WbuZ: glycosyl amidation-associated protein WbuZ
     0.0023   14.9   0.2      0.036   11.0   0.2    2.0  2  TIGR01186 proV: glycine betaine/L-proline transport ATP binding subunit
     0.0083   12.7   0.1      0.016   11.8   0.1    1.4  1  TIGR03966 actino_HemFlav: heme/flavin dehydrogenase, mycofactocin system
  ------ inclusion threshold ------
      0.027   11.9   0.7        3.6    5.0   0.0    2.3  2  TIGR00007 TIGR00007: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase
      0.035   10.8   0.5      0.097    9.4   0.3    1.8  1  TIGR02151 IPP_isom_2: isopentenyl-diphosphate delta-isomerase, type 2


Domain annotation for each model (and alignments):
>> TIGR01302  IMP_dehydrog: inosine-5'-monophosphate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  621.5   0.2  4.9e-190  1.8e-187       1     449 [.      28     474 ..      28     475 .. 0.99

  Alignments for each domain:
  == domain 1    score: 621.5 bits;  conditional E-value: 4.9e-190
   TIGR01302   1 gltfddvlllPakidvepkdvdlstrltkniklkiPvlssamDtvtesklaialAreGgiGviHknmsiekqveevkkvKraeegvisdpvtvsPettvedvlelkekkgisgvpvvedgkeegklvGivtkkdlrfvkdkskkvsevmtkeevitvkeeidleeaeevleekkieklpvvdkegelvglvtvkdiekakefpkaskdeegrlivgaavgtreedkeRveelveagvdvlviDssqgnsikvlesikkikktypdldviaGnvataeaakalidagadglkvGiGsGsiCttrevaavGvpqitAvakvaeaaaksgipviADGGirysGdivKalalGadavmlGsllagteEspgevvlkngrrlKaYRGmGsleAme.kgskdRYlkeekedekkvaeGvegavvdkGsvaellaqlvkglksglgdvGaksleelk 449
                 g+t+ d ++lP++i+++++dv+l+t++tk+ikl++P++ss+mDtvte+++ai +A+ Gg+G+iH n +ie+q +ev++vKr+e+g+i dp+ + P++t++dv+ +k+k+g+sg+pv+e+g   g+lvGivt++d +fvkd+s++v evmt +++++++++ +l+ea+++l ++k++klpvv+k+ elv+l+++kd+ k+++fp+ask +++rl+vga+v tr +dk Rv++l+eagvdv+viDssqg+s+++  ++k ik+++p+l+v++Gnv+  ++ak+li+ g+d+l++G+GsGsiCtt+ev+avG+pq+tAv++v+++a+k+g+p+ ADGGi++ G+i+Kala Ga+avm+Gsllagt+E+pg++++k+g+rlK+YRGmGs++Am+   s+dRY++++   + +va+Gv+gav d Gs+++ l++l +glk++l+d+G ++l el+
  MMETSP1137-20121227|8164_1  28 GYTYADYIILPGHINFAAEDVSLQTQVTKKIKLNLPFISSPMDTVTEAQMAIHMALFGGLGIIHCNNTIEEQCAEVRRVKRYENGFILDPFCLPPNATLADVDMIKAKHGFSGIPVTENGALGGRLVGIVTTRDHDFVKDRSTPVMEVMT-TDLVVAEVGCSLQEANQLLMDSKKGKLPVVNKKRELVALISRKDMRKNRDFPDASKGDDKRLLVGASVHTRPDDKLRVKALAEAGVDVVVIDSSQGDSTYQEGMVKFIKENFPQLQVVGGNVVCVTQAKNLIKWGVDALRIGMGSGSICTTQEVMAVGRPQATAVYHVCKYASKYGVPCWADGGISNIGKIAKALACGASAVMMGSLLAGTDEAPGDYFYKDGVRLKKYRGMGSIDAMQxGTSSDRYFSAD--SALRVAQGVSGAVMDXGSLKRYLPYLSTGLKHSLQDMGLRNLLELR 474
                 79****************************************************************************************************************************************************.***********************************************************************************************************************************************************************************************************************************************44589*******..79****************************************9998 PP

>> TIGR01303  IMP_DH_rel_1: IMP dehydrogenase family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  200.8   0.7   2.3e-62   8.7e-60      12     418 ..      29     442 ..      23     478 .. 0.88

  Alignments for each domain:
  == domain 1    score: 200.8 bits;  conditional E-value: 2.3e-62
   TIGR01303  12 ltyddvflvpsrsevgsrldvdlstadgt..gttiplvvanmtavagrrmaetvarrgglvilpqdvpievvketvafvksrdl.vldtpitlapddtvadalalihkrahgaavvveed....kpvgvvtdkdlegv.drftqveevmstdlvtlpadlepreafdlleeasrklapvvdadgslagiltrtgalratlytpavd.aagrlrigaavgingdvegkakalldagvdvlvidtahghqekmisavkavraldlrvpivagnvvsaegvrdlveaganiikvgvgpgamcttrmmtgvgrpqfsavlecaaearklgahvwadggvrdprdvalalaagasnvmvgswfagtyespgdlrrdadgraykesfgmaskraveartskeeafdrarkalfeegistsrl 418
                  ty d +++p   + ++  dv l+t+        +p++ + m +v+  +ma  +a  ggl i+  +  ie     v  vk+ +   +  p  l p+ t+ad   +  k   +   v e++    + vg+vt +d + v dr t v evm+tdlv+++ + + +ea +ll ++++   pvv++  +l  +++r+   +   +  a    + rl +ga+v    d + + kal++agvdv+vid++ g  +     vk +++  +++ +v gnvv+    ++l++ g + +++g+g g++ctt+ +  vgrpq +av      a k+g   wadgg+ +   +a ala gas vm+gs +agt e+pgd  + +dg   k+  gm s  a++  ts +  f         +g+s + +
  MMETSP1137-20121227|8164_1  29 YTYADYIILPGHINFAA-EDVSLQTQVTKkiKLNLPFISSPMDTVTEAQMAIHMALFGGLGIIHCNNTIEEQCAEVRRVKRYENgFILDPFCLPPNATLADVDMIKAKHGFSGIPVTENGalggRLVGIVTTRDHDFVkDRSTPVMEVMTTDLVVAEVGCSLQEANQLLMDSKKGKLPVVNKKRELVALISRKDMRKNRDFPDASKgDDKRLLVGASVHTRPDDKLRVKALAEAGVDVVVIDSSQGDSTYQEGMVKFIKENFPQLQVVGGNVVCVTQAKNLIKWGVDALRIGMGSGSICTTQEVMAVGRPQATAVYHVCKYASKYGVPCWADGGISNIGKIAKALACGASAVMMGSLLAGTDEAPGDYFY-KDGVRLKKYRGMGSIDAMQXGTSSDRYFSADSALRVAQGVSGAVM 442
                 59*********999986.578887765551156799**********************************99999****98765233459***********8777666665444344432344499*******9997769*****************************************************988887777666515679*************************************9999*******************************************************************************************************************865.788899999**************9998876655557888888776 PP

>> TIGR01305  GMP_reduct_1: guanosine monophosphate reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.0   0.0    0.0015      0.55      43      83 ..      59      99 ..      36     108 .. 0.86
   2 !  105.8   0.4   1.3e-33   4.9e-31     118     286 ..     259     427 ..     212     477 .. 0.85

  Alignments for each domain:
  == domain 1    score: 7.0 bits;  conditional E-value: 0.0015
   TIGR01305 43 ysgvpiiaanmdtvgtfemaaalasfdiltaihkhysvdew 83
                   +p i++ mdtv   +ma  +a f  l  ih   +++e 
  MMETSP1137-20121227|8164_1 59 KLNLPFISSPMDTVTEAQMAIHMALFGGLGIIHCNNTIEEQ 99
                4578*****************************99999885 PP

  == domain 2    score: 105.8 bits;  conditional E-value: 1.3e-33
   TIGR01305 118 evpqlkficldvangysehfvefvkkvreaypkktimagnvvtgemveelilsgadivkvgigpgsvcttrkktgvgypqlsaviecadaahglkghivsdggcttpgdvakafgagadfvmlggllagheesggevveengkklklfygmssdtamkkhaggvaeyra 286
                 +   ++ +++d ++g s     +vk ++e++p+  ++ gnvv     ++li  g d +++g+g gs+ctt+    vg pq +av  ++  a   +    +dgg ++ g +aka++ ga  vm+g llag +e+ g+ + ++g +lk + gm s  am+  + +   + a
  MMETSP1137-20121227|8164_1 259 AEAGVDVVVIDSSQGDSTYQEGMVKFIKENFPQLQVVGGNVVCVTQAKNLIKWGVDALRIGMGSGSICTTQEVMAVGRPQATAVYHVCKYASKYGVPCWADGGISNIGKIAKALACGASAVMMGSLLAGTDEAPGDYFYKDGVRLKKYRGMGSIDAMQXGTSSDRYFSA 427
                 44568899*******9999889999999**********************************************************99999999999************************************************************976665444444 PP

>> TIGR01304  IMP_DH_rel_2: IMP dehydrogenase family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.3   0.0   2.8e-10   1.1e-07      10      76 ..      26      93 ..      23     105 .. 0.91
   2 !   76.0   0.7   1.8e-24   6.7e-22     145     299 ..     255     398 ..     240     476 .. 0.84

  Alignments for each domain:
  == domain 1    score: 29.3 bits;  conditional E-value: 2.8e-10
   TIGR01304 10 rrayeldeiavvpsrrtrdskdvdtawkid.ayrfelPvlaspmdalvspelaielgelGglGvlnle 76
                r  y+  +  ++p+     ++dv+ + ++   ++ +lP+++spmd++ ++++ai+++  GglG++  +
  MMETSP1137-20121227|8164_1 26 REGYTYADYIILPGHINFAAEDVSLQTQVTkKIKLNLPFISSPMDTVTEAQMAIHMALFGGLGIIHCN 93
                778999999*******************96379*******************************9765 PP

  == domain 2    score: 76.0 bits;  conditional E-value: 1.8e-24
   TIGR01304 145 akvvveaGvdllviqgtvvsaehvsssgealnlkklisel..dvPvvvGgvvdyetalhlmrtGaagvlvGggtgaatttrevlGievpmataiadvaaarrdyldetGgryvhviadGgietsGdlakaiacGadavvlGsPlaraaeaaGrGffw 299
                  k+++eaGvd++vi ++    +  s+ +e   ++k+i+e   ++ vv G+vv  + a +l++ G  ++ +G+g+g+ +tt+ev+ ++ p+ata+  v      y  + G   v+  adGgi++ G++aka+acGa av++Gs la ++ea+G  f+ 
  MMETSP1137-20121227|8164_1 255 VKALAEAGVDVVVIDSS----QGDSTYQEG--MVKFIKENfpQLQVVGGNVVCVTQAKNLIKWGVDALRIGMGSGSICTTQEVMAVGRPQATAVYHVCK----YASKYG---VPCWADGGISNIGKIAKALACGASAVMMGSLLAGTDEAPGDYFYK 398
                 57899********9854....444555554..68999884346899*************************************************9985....777779...****************************************98775 PP

>> TIGR01306  GMP_reduct_2: guanosine monophosphate reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.0     0.014       5.2      28      65 ..      55      92 ..      29     114 .. 0.74
   2 !   88.9   0.1   2.5e-28   9.2e-26      79     256 ..     235     411 ..     192     449 .. 0.85

  Alignments for each domain:
  == domain 1    score: 4.3 bits;  conditional E-value: 0.014
   TIGR01306 28 lgkkkfklpvvpanmqtiideklakslaengyfyimhr 65
                  k k++lp + + m+t+ + ++a+++a  g + i+h 
  MMETSP1137-20121227|8164_1 55 TKKIKLNLPFISSPMDTVTEAQMAIHMALFGGLGIIHC 92
                34568999********************9998888885 PP

  == domain 2    score: 88.9 bits;  conditional E-value: 2.5e-28
   TIGR01306  79 kergllasisvgvkkaeyefveklaeeklipeyitidiahghsnsviemikhiktelpdsfviagnvgtpeavrelenagadatkvgigpgkvcitkiktgfgtggwqlaalrlcakaark...piiadggirthgdiaksirfgasmvmigslfagheespgktveldgklykeyfgsas 256
                 +++ ll   sv  +  +   v+ lae     + + id ++g s     m+k ik+++p+  v+ gnv      ++l + g da ++g+g g +c t+    +  g  q +a+  ++k a+k   p  adggi   g iak++  gas vm+gsl+ag +e+pg+   +dg + k+y g  s
  MMETSP1137-20121227|8164_1 235 DDKRLLVGASVHTRPDDKLRVKALAEAG--VDVVVIDSSQGDSTYQEGMVKFIKENFPQLQVVGGNVVCVTQAKNLIKWGVDALRIGMGSGSICTTQEV--MAVGRPQATAVYHVCKYASKygvPCWADGGISNIGKIAKALACGASAVMMGSLLAGTDEAPGDYFYKDGVRLKKYRGMGS 411
                 5667777778888888877888898887..789**************************************************************9865..55667788777776677766566999*************************************************76544 PP

>> TIGR03151  enACPred_II: putative enoyl-[acyl-carrier-protein] reductase II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0   5.7e-06    0.0021       2      60 ..      52     109 ..      51     125 .. 0.88
   2 !   17.0   0.6   1.6e-06   0.00059     113     208 ..     296     400 ..     251     419 .. 0.69

  Alignments for each domain:
  == domain 1    score: 15.2 bits;  conditional E-value: 5.7e-06
   TIGR03151   2 tkltelleieyPilqGgmawvataelaaavseaGGlGiigaGnapkdvvkkeikkvkel 60 
                 t++t+ ++++ P +   m  v++a++a  ++  GGlGii + n+ ++   +e+++vk+ 
  MMETSP1137-20121227|8164_1  52 TQVTKKIKLNLPFISSPMDTVTEAQMAIHMALFGGLGIIHCNNTIEEQ-CAEVRRVKRY 109
                 89999**********************************998887766.5789999875 PP

  == domain 2    score: 17.0 bits;  conditional E-value: 1.6e-06
   TIGR03151 113 iPvvasvalakrleklGadaviaeGmeaGGh........iG..elttlalvpqvvdavsiPviaaGGiadgrGlaaalalGaeavqlGtrflvakesevhpnykek 208
                    v  v+ ak l k G+da+ + Gm +G          +G  + t++  v + +    +P  a GGi++   +a ala Ga+av +G+ +  ++e+  +  yk+ 
  MMETSP1137-20121227|8164_1 296 GGNVVCVTQAKNLIKWGVDALRI-GMGSGSIcttqevmaVGrpQATAVYHVCKYASKYGVPCWADGGISNIGKIAKALACGASAVMMGSLLAGTDEAPGDYFYKDG 400
                 335778999***********854.77777641111111123112344555666677788*****************************988877777766666665 PP

>> TIGR03572  WbuZ: glycosyl amidation-associated protein WbuZ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.5   0.1    0.0014      0.51      52     102 ..     268     318 ..     250     332 .. 0.72
   2 !    8.4   0.0   0.00073      0.27      66     104 ..     345     383 ..     328     388 .. 0.67

  Alignments for each domain:
  == domain 1    score: 7.5 bits;  conditional E-value: 0.0014
   TIGR03572  52 idaskeerekllelieklaeevfvPltvgGGiksledvkkllkaGadKvsi 102
                 id s+ ++  +  +++ + e+      vgG + ++ ++k+l+k G+d + i
  MMETSP1137-20121227|8164_1 268 IDSSQGDSTYQEGMVKFIKENFPQLQVVGGNVVCVTQAKNLIKWGVDALRI 318
                 4555555555555666555555555567888****************8766 PP

  == domain 2    score: 8.4 bits;  conditional E-value: 0.00073
   TIGR03572  66 ieklaeevfvPltvgGGiksledvkkllkaGadKvsint 104
                 + k a++  vP  + GGi+++ ++ k l +Ga  v++ +
  MMETSP1137-20121227|8164_1 345 VCKYASKYGVPCWADGGISNIGKIAKALACGASAVMMGS 383
                 555666667777777777777777777777777766544 PP

>> TIGR01186  proV: glycine betaine/L-proline transport ATP binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.0      0.11        42      52      90 ..      90     128 ..      85     145 .. 0.86
   2 !   11.0   0.2   9.6e-05     0.036     284     352 ..     152     221 ..     143     227 .. 0.82

  Alignments for each domain:
  == domain 1    score: 0.9 bits;  conditional E-value: 0.11
   TIGR01186  52 idGediaeisdaelrevrrkkiamviqkialfPhmtild 90 
                 i  ++ +e + ae+r v+r   ++++  ++l P  t+ d
  MMETSP1137-20121227|8164_1  90 IHCNNTIEEQCAEVRRVKRYENGFILDPFCLPPNATLAD 128
                 666788888999*********************999876 PP

  == domain 2    score: 11.0 bits;  conditional E-value: 9.6e-05
   TIGR01186 284 klvGvvdvesikkarkkaqlledvlkediltvdeqtllsellskvlkagik.vpvvdedqrlvGivsras 352
                 +lvG+v+  + +  +++++ + +v+++d+++ + ++ l+e  + + + +   +pvv+ +++lv ++sr+ 
  MMETSP1137-20121227|8164_1 152 RLVGIVTTRDHDFVKDRSTPVMEVMTTDLVVAEVGCSLQEANQLLMDSKKGkLPVVNKKRELVALISRKD 221
                 6889999999999999999999999999999999999999988877655433999999999999999875 PP

>> TIGR03966  actino_HemFlav: heme/flavin dehydrogenase, mycofactocin system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.8   0.1   4.2e-05     0.016     256     332 ..     300     383 ..     276     396 .. 0.67

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 4.2e-05
   TIGR03966 256 lrvddarravdvGvtaisvsnhGGnnld.......gtpaairalpaiaeavGdqvevlldGGirrGsdvvkalalGaravliGr 332
                 + v +a+  ++ Gv+a+ +    G           g p a  +  +   a    v    dGGi     ++kala Ga av++G 
  MMETSP1137-20121227|8164_1 300 VCVTQAKNLIKWGVDALRIGMGSGSICTtqevmavGRPQATAVYHVCKYASKYGVPCWADGGISNIGKIAKALACGASAVMMGS 383
                 55666666666666666655544432211111111455555555555566666778889***********************96 PP

>> TIGR00007  TIGR00007: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   0.2     0.012       4.4      45     101 ..     263     319 ..     250     342 .. 0.82
   2 ?    5.0   0.0    0.0095       3.6      67     103 ..     348     384 ..     334     391 .. 0.69

  Alignments for each domain:
  == domain 1    score: 4.7 bits;  conditional E-value: 0.012
   TIGR00007  45 lHvVDLdgAkegekknlevikkiveelevkvqvGGGiRsleavekllelgverviig 101
                 + vV +d  ++ ++ ++ ++k i+e++ +   vGG +  + ++++l++ gv+++ ig
  MMETSP1137-20121227|8164_1 263 VDVVVIDSSQGDSTYQEGMVKFIKENFPQLQVVGGNVVCVTQAKNLIKWGVDALRIG 319
                 5578888999999999999*9999999876668999***************987665 PP

  == domain 2    score: 5.0 bits;  conditional E-value: 0.0095
   TIGR00007  67 iveelevkvqvGGGiRsleavekllelgverviigta 103
                  +++  v++   GGi ++ +++k+l+ g+++v++g++
  MMETSP1137-20121227|8164_1 348 YASKYGVPCWADGGISNIGKIAKALACGASAVMMGSL 384
                 4455556666667888888888888888888877775 PP

>> TIGR02151  IPP_isom_2: isopentenyl-diphosphate delta-isomerase, type 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   0.3   0.00026     0.097     238     288 ..     330     382 ..     271     392 .. 0.86

  Alignments for each domain:
  == domain 1    score: 9.4 bits;  conditional E-value: 0.00026
   TIGR02151 238 afsdwGiptaasllevrs..aakkleliasGGlrsgldvakalaLGAdlvgla 288
                   +  G p a+++++v +  ++  ++  a GG+ +   +akala GA++v + 
  MMETSP1137-20121227|8164_1 330 EVMAVGRPQATAVYHVCKyaSKYGVPCWADGGISNIGKIAKALACGASAVMMG 382
                 556678888888888877555667899*********************99775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (509 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       198  (0.0482691); expected 82.0 (0.02)
Passed bias filter:                      146  (0.0355924); expected 82.0 (0.02)
Passed Vit filter:                        29  (0.00706972); expected 4.1 (0.001)
Passed Fwd filter:                        11  (0.00268162); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.52u 0.17s 00:00:00.69 Elapsed: 00:00:00.86
# Mc/sec: 781.19
//
Query:       MMETSP1137-20121227|8165_1  [L=429]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (429 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       216  (0.0526572); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.14s 00:00:00.53 Elapsed: 00:00:00.49
# Mc/sec: 1155.58
//
Query:       MMETSP1137-20121227|8166_1  [L=134]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (134 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       135  (0.0329108); expected 82.0 (0.02)
Passed bias filter:                      111  (0.02706); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.18s 00:00:00.34 Elapsed: 00:00:00.54
# Mc/sec: 327.53
//
Query:       MMETSP1137-20121227|8167_1  [L=233]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (233 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        49  (0.0119454); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.15s 00:00:00.35 Elapsed: 00:00:00.35
# Mc/sec: 878.67
//
Query:       MMETSP1137-20121227|8168_1  [L=308]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (308 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       106  (0.0258411); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.15s 00:00:00.40 Elapsed: 00:00:00.50
# Mc/sec: 813.05
//
Query:       MMETSP1137-20121227|8169_1  [L=305]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (305 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        83  (0.020234); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.13s 00:00:00.37 Elapsed: 00:00:00.37
# Mc/sec: 1088.02
//
Query:       MMETSP1137-20121227|8170_1  [L=183]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (183 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        66  (0.0160897); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.12s 00:00:00.32 Elapsed: 00:00:00.54
# Mc/sec: 447.30
//
Query:       MMETSP1137-20121227|8171_1  [L=542]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (542 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       117  (0.0285227); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.18s 00:00:00.54 Elapsed: 00:00:00.44
# Mc/sec: 1625.87
//
Query:       MMETSP1137-20121227|8172_1  [L=270]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (270 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        74  (0.01804); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.17s 00:00:00.38 Elapsed: 00:00:00.33
# Mc/sec: 1079.91
//
Query:       MMETSP1137-20121227|8173_1  [L=568]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   1.4e-218  724.2   0.3   1.6e-218  724.0   0.2    1.0  1  TIGR01722 MMSDH: methylmalonate-semialdehyde dehydrogenase (acylating)
    7.7e-88  292.8   0.0    8.7e-88  292.6   0.0    1.0  1  TIGR01804 BADH: betaine aldehyde dehydrogenase
    8.6e-84  279.6   0.0    1.1e-83  279.3   0.0    1.0  1  TIGR02299 HpaE: 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase
      3e-78  261.5   0.1    3.8e-78  261.2   0.0    1.0  1  TIGR01780 SSADH: succinate-semialdehyde dehydrogenase
    8.5e-73  243.7   0.0    1.1e-72  243.3   0.0    1.0  1  TIGR01237 D1pyr5carbox2: putative delta-1-pyrroline-5-carboxylate dehydrogenase
    1.2e-67  226.4   0.3    1.5e-67  226.1   0.2    1.0  1  TIGR03216 OH_muco_semi_DH: 2-hydroxymuconic semialdehyde dehydrogenase
    1.6e-59  199.8   0.3    1.9e-59  199.5   0.2    1.0  1  TIGR03374 ABALDH: 1-pyrroline dehydrogenase
    6.8e-58  194.4   0.3    8.4e-58  194.1   0.2    1.0  1  TIGR03240 arg_catab_astD: succinylglutamic semialdehyde dehydrogenase
    1.7e-56  189.6   0.0    2.1e-56  189.4   0.0    1.0  1  TIGR03250 PhnAcAld_DH: putative phosphonoacetaldehyde dehydrogenase
    3.8e-50  168.7   0.5    5.1e-50  168.2   0.4    1.0  1  TIGR01238 D1pyr5carbox3: delta-1-pyrroline-5-carboxylate dehydrogenase
    1.1e-37  127.7   0.0    1.6e-37  127.2   0.0    1.1  1  TIGR01236 D1pyr5carbox1: 1-pyrroline-5-carboxylate dehydrogenase
    5.2e-22   75.7   0.7    9.3e-22   74.8   0.5    1.3  1  TIGR02278 PaaN-DH: phenylacetic acid degradation protein paaN
    3.8e-11   39.7   1.6    4.5e-10   36.2   1.1    2.0  1  TIGR02288 PaaN_2: phenylacetic acid degradation protein paaN
     0.0031   14.2   0.0      0.065    9.9   0.0    2.1  2  TIGR00407 proA: glutamate-5-semialdehyde dehydrogenase


Domain annotation for each model (and alignments):
>> TIGR01722  MMSDH: methylmalonate-semialdehyde dehydrogenase (acylating)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  724.0   0.2  5.6e-221  1.6e-218       3     477 .]      79     553 ..      77     553 .. 1.00

  Alignments for each domain:
  == domain 1    score: 724.0 bits;  conditional E-value: 5.6e-221
   TIGR01722   3 hlidGkfvegksdkyipvsnpatnevlakvaeasaeevdaavasaretfaawaetsvaerarvllryqallkehrdeiaklisaeqGktledakGdvarGlevvehacsvtslllGetvesvakdvdvysirqplGvvaGitpfnfpamiplwmfplaiacGntfvlkpsekvpsaavklaellseaGapdGvlnvvhGdkeavdrllehpdvkavsfvGsvavgeyiyetgsahgkrvqalaGaknhmvvlpdadkeaaldalvgaavGaaGqrcmaisaavlvGaakelveeireraekvrvgagddpgaelGplitkqakervasliasgakeGaevlldGrgykveGyeeGnfvGitllervkpdmkiykeeifGpvlvvleadtleeaiklinespyGnGtaiftsdGaaarkfqheievGqvGvnvpipvplpffsftGwkdslfGdlhiyGkqGvrfytrlktvtarw 477
                 ++i+ + v++ks + +pv  pa++ +l++v++a+aee++aav +ar +f+aw+ tsv++rarv+l+ qal++eh +e+a+l+s+e+Gkt++dakGd++rGlevvehacsv+sl +Get+++va+ vd +s+r plGv+aGi+pfnfpamiplwmfp+a++ Gntfvlkpse+vp++a+ lael + aG+pdGvln++hG ++av+++++ p++ka+sfvGs a+g +++++gsa+gkrvqa+ Ga+nh+vvl dad +a+++al +aa+GaaGqrcmais +vlvG a   ++e++ +a  +++gag +pg+e+ pl +kqakerv++liasg+++Ga   ldGr+  veGy++Gn+vG+t++++vkp+m+ ykee+fGpvl vl +dtl eai+lin++pyGnGta+ft++Gaa+rkfq+e++vGq+G+n+pipvplp+fsftG+++s+ Gdl++yGk  v+fyt+ ktvt+ w
  MMETSP1137-20121227|8173_1  79 LFINNQEVDSKSVHDMPVLCPASQRILGHVPIATAEEMEAAVDAARAAFPAWSATSVSNRARVMLKLQALIREHTQELAELLSSEHGKTVDDAKGDIFRGLEVVEHACSVPSLQMGETMQNVATGVDCHSYRVPLGVCAGIAPFNFPAMIPLWMFPMAVVTGNTFVLKPSERVPLTAMYLAELTRRAGLPDGVLNIIHGTHDAVNFICDSPHIKAISFVGSDAAGSHVHHRGSANGKRVQANLGAQNHAVVLEDADPQAVVSALTAAAFGAAGQRCMAISRVVLVGRAAACLPELVRKASALKLGAGLEPGSEVPPLNSKQAKERVERLIASGVRDGAVCDLDGRNAVVEGYPNGNWVGPTIISNVKPEMELYKEEVFGPVLQVLTVDTLAEAIALINANPYGNGTALFTRSGAASRKFQYEVNVGQIGINLPIPVPLPMFSFTGSRGSIQGDLNFYGKASVQFYTQWKTVTTSW 553
                 79999*************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************9 PP

>> TIGR01804  BADH: betaine aldehyde dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  292.6   0.0     3e-90   8.7e-88       1     466 [.      80     546 ..      80     547 .. 0.94

  Alignments for each domain:
  == domain 1    score: 292.6 bits;  conditional E-value: 3e-90
   TIGR01804   1 fidGeyveaeagkvleiinPanqeviaevaeatredvekaiaaarraqgewaalsalergrilrriaellrkkneelakletldtGkaleetlvadiddiadvleffaGladkleGeiielgip.sfakvrreplGvvvgigawnyPlliaswksaPalaaGnalvlkPseitPltalkvaelleeaGlPkGvfnvvlGkgaevGeelvehkdvakvsltGgvetGkkimaaaaeelkkvtlelGGksPlivfddadlelavdqallanffsaGqvcsnGtrvlvekkikekflaklvervkkiklGdgfdeetelGPlisaehrdkvlkyiekgkeegaklaiGGkvpeeeeldeGffiePtvfadvtddmtivreeifGPvlsvlefeseeevikrandteyGlaagvftadleraervaerlkaGtvwindynlspaev.PfGGykqsGiGren..gvaaleeytev 466
                 fi+ + v++++ + + ++ Pa+q ++ +v  at+e++e+a+ aar a++ w+a s  +r+r++ +   l+r++ +ela+l + + Gk+++++ + di  + +v+e+ + + + + Ge+++   +   ++  r+plGv++gi+++n+P +i +w    a+++Gn++vlkPse  Plta+ +ael + aGlP+Gv+n+++G+  +  + +++ ++++ +s+ G+ ++G ++ +  +++ k+v  +lG ++  +v++dad +  v     a+f  aGq c + +rv++  +  ++ l +lv+++ ++klG g+++ +e+ Pl s + +++v++ i+ g  +ga     G     e++ +G ++ Pt++++v+ +m + +ee+fGPvl vl+ ++ +e+i++ n+  yG  +++ft+    +++   ++++G + in   ++p  +  f G++ s  G  n  g+a+++ yt+ 
  MMETSP1137-20121227|8173_1  80 FINNQEVDSKSVHDMPVLCPASQRILGHVPIATAEEMEAAVDAARAAFPAWSATSVSNRARVMLKLQALIREHTQELAELLSSEHGKTVDDA-KGDIFRGLEVVEHACSVPSLQMGETMQNVATgVDCHSYRVPLGVCAGIAPFNFPAMIPLWMFPMAVVTGNTFVLKPSERVPLTAMYLAELTRRAGLPDGVLNIIHGT-HDAVNFICDSPHIKAISFVGSDAAGSHVHHRGSANGKRVQANLGAQNHAVVLEDADPQAVVSALTAAAFGAAGQRCMAISRVVLVGRA-AACLPELVRKASALKLGAGLEPGSEVPPLNSKQAKERVERLIASGVRDGAVCDLDGRNAVVEGYPNGNWVGPTIISNVKPEMELYKEEVFGPVLQVLTVDTLAEAIALINANPYGNGTALFTRSGAASRKFQYEVNVGQIGINLPIPVPLPMfSFTGSRGSIQGDLNfyGKASVQFYTQW 546
                 788888999999*******************************************************************************9.*****************999******99998789999**********************************************************************.888899**************************************************988887777788999**********9876654.678999*****************************************************************************************************************************************8777766543578888887775543478888888776 PP

>> TIGR02299  HpaE: 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  279.3   0.0   3.6e-86   1.1e-83       3     484 ..      79     559 ..      77     563 .. 0.94

  Alignments for each domain:
  == domain 1    score: 279.3 bits;  conditional E-value: 3.6e-86
   TIGR02299   3 hlidGelvasesgetfetlsPadnevlasvakGgaedvdkavkaakkafkkwaelkaaerkklllkladliekhadeiavlesldtGqalrlvrkavaraaenfrffadkaeeakdgetlpvdefl.nytvrvpvGvvglitPwnaPfmlstwkiaPalaaGntvvlkpaelsPltaarlaelvkeaglPdGvlnlvhGfGeeaGkalvehpavkavsfvGetatGsaimrngadtlkrlslelGGksPvivfddadleraldavvfmifslnGerctassrllvqesiaedfveklkervkairvGdPldeetevGPlikeehlakvlsylevaekeGatilvGgkkakevldkelsrGnyvaPtvlvdadnkmriaqeeifGPvltvipfkdeeealelandieyGlagyvwtedvgralrvaaaleaGmiyvnsenvrdlrt.PfGGvkas..GigreGGdysfdfytetknvavalgehkip 484
                 ++i+ + v+s+s + ++ l Pa++  l++v   +ae++++av+aa++af++w+ ++  +r++++lkl  li +h++e+a l s + G+++   +  + r+ e  ++     + ++ ++  +v + +  ++ rvp+Gv++ i+P+n P m+  w    a+ +Gnt vlkp+e  Plta  lael ++aglPdGvln++hG  ++a + + + p++ka+sfvG+ a+Gs + ++g+++ kr++ +lG ++ ++v++dad +  + a +   f   G+rc a sr+++     +  + +l++++ a+++G  l++++ev Pl +++  ++v   +  + ++Ga     g++a     +   +Gn+v Pt++ +++ +m + +ee+fGPvl v++ +  +ea+ l n   yG  + ++t++   + +   +++ G i +n      l+   f G++ s  G+    G+ s +fyt+ k+v+ + +e  + 
  MMETSP1137-20121227|8173_1  79 LFINNQEVDSKSVHDMPVLCPASQRILGHVPIATAEEMEAAVDAARAAFPAWSATSVSNRARVMLKLQALIREHTQELAELLSSEHGKTVDDAKGDIFRGLEVVEHACSVPSLQMGETMQNVATGVdCHSYRVPLGVCAGIAPFNFPAMIPLWMFPMAVVTGNTFVLKPSERVPLTAMYLAELTRRAGLPDGVLNIIHGT-HDAVNFICDSPHIKAISFVGSDAAGSHVHHRGSANGKRVQANLGAQNHAVVLEDADPQAVVSALTAAAFGAAGQRCMAISRVVLVGRA-AACLPELVRKASALKLGAGLEPGSEVPPLNSKQAKERVERLIASGVRDGAVCDLDGRNAVV---EGYPNGNWVGPTIISNVKPEMELYKEEVFGPVLQVLTVDTLAEAIALINANPYGNGTALFTRSGAASRKFQYEVNVGQIGINLPIPVPLPMfSFTGSRGSiqGDLNFYGKASVQFYTQWKTVTTSWKEDSVM 559
                 79****************************************************************************************************99987776666665555556655515789********************************************************************5.7899*****************************************************************************9988765.5678899*******************************************99999888766...8899*******************************************************************************9999998647*****9944555678***************999888776 PP

>> TIGR01780  SSADH: succinate-semialdehyde dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  261.2   0.0   1.3e-80   3.8e-78       2     417 ..      97     513 ..      96     544 .. 0.93

  Alignments for each domain:
  == domain 1    score: 261.2 bits;  conditional E-value: 1.3e-80
   TIGR01780   2 vnPatGekigkvpevsveeveeaieaaeealktykeltakerakllrkwyelilenkddlaklltlenGkplkeakgevlyaasyleWfaeeakrvyGdviaslqsdkrllvikqPvGvaaiitPWnfPaamitrkagaalaaGctvvvkPaeqtPlsalalarlaekaGvPkgvlnvvtssaeevGkvltssPlvrkvsftGstavGkillkqsastvkkvslelGGnaPlivfddadldqavegalaskfrnagqtcvcanrlyvhesvydefakklaekvkklkvGdGldegvtvGplinekavekvekhiedavekGakvvvgGdkreekg...gnffePtvlsdvtadmlvakeetfGPlapvfkfddeeevvalandtevGlaayffskdlakiirvaeelevGlvgvntgli 417
                   Pa+  ++g+vp +++ee+e+a++aa+ a+++++++++ +ra+++ k+  li e+ ++la+ll+ e+Gk++++akg++  +   +e  +      +G+++++ ++     + + P+Gv+a i+P+nfPa +       a+ +G t+v+kP+e+ Pl+a+ la+l+++aG+P+gvln++ +  ++  + +++sP ++ +sf Gs a G  + ++ + + k+v  +lG +   +v +dad    v  + a+ f +agq c+   r+++  +        l+ k + lk+G Gl++g+ v pl +++a e+ve+ i+  v  Ga   ++G ++  +g   gn++ Pt++s+v+ +m++ kee fGP+  v++ d+ +e++al n+ ++G  + +f++  a   +   e++vG +g+n  + 
  MMETSP1137-20121227|8173_1  97 LCPASQRILGHVPIATAEEMEAAVDAARAAFPAWSATSVSNRARVMLKLQALIREHTQELAELLSSEHGKTVDDAKGDIFRGLEVVEHACSVPSLQMGETMQNVATGVDCHSYRVPLGVCAGIAPFNFPAMIPLWMFPMAVVTGNTFVLKPSERVPLTAMYLAELTRRAGLPDGVLNIIHGTHDA-VNFICDSPHIKAISFVGSDAAGSHVHHRGSANGKRVQANLGAQNHAVVLEDADPQAVVSALTAAAFGAAGQRCMAISRVVLVGRAA-ACLPELVRKASALKLGAGLEPGSEVPPLNSKQAKERVERLIASGVRDGAVCDLDGRNAVVEGypnGNWVGPTIISNVKPEMELYKEEVFGPVLQVLTVDTLAEAIALINANPYGNGTALFTRSGAASRKFQYEVNVGQIGINLPIP 513
                 569****************************************************************************************99************************************75556677889***************************************997655.589***************************************************99999999****************98877665.556778899999*******************************************665544333389***************************************************************************8764 PP

>> TIGR01237  D1pyr5carbox2: putative delta-1-pyrroline-5-carboxylate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  243.3   0.0   3.7e-75   1.1e-72      32     468 ..      76     510 ..      49     549 .. 0.93

  Alignments for each domain:
  == domain 1    score: 243.3 bits;  conditional E-value: 3.7e-75
   TIGR01237  32 dyplvinGeeveteakidsinpadk.sevvGkvakasvedaeqalqaakkafeewkktdveeraaillkaaailkrrrhelsallvlevGkiyaeadaevaeaidfleyyaremikla.kskevlsieGeknrylyiplGvavvispwnfplailvGmtvapivtGncvvlkpaeaatviaaklveileeaGlpkGvlqfvpGkGsevGeylvdhpktrlitftGsrevGlriyedaakvqpGqkhlkrviaelGGkdavivdesadieqavaaavtsafGfaGqkcsaasrvvvlekvydevverfveatkslkvgktdeadvqvgpvidqksfdkikeyielgkaegklv.lggedddskGy....fikptifkdvdrkarlaqeeifGpvvavlrakdfdealeiansteygltGgvisnsrerierakaefevGnlyfnr 468
                   pl+in +ev++++  d    +   ++++G+v  a+ e+ e a++aa++af++w  t+v++ra+++lk  a +++  +el+ ll+ e Gk++++a  ++   ++ +e+ a ++  l+ +++ ++   G + +   +plGv+  i+p+nfp  i   m   ++vtGn+ vlkp+e  ++ a +l+e+ + aGlp Gvl+ + G+ + v +++ d p+++ i+f Gs + G +++++      G    krv a+lG ++  +v e+ad +  v+a + +afG aGq+c a+srvv++ +   + +  +v ++ +lk+g + e+ ++v p+  +++ ++++  i  g  +g +  l g ++  +Gy    +++pti+++v ++  l +ee+fGpv+ vl +    ea+ + n+  yg   +++++s     + + e +vG + +n 
  MMETSP1137-20121227|8173_1  76 RIPLFINNQEVDSKSVHDMPVLCPAsQRILGHVPIATAEEMEAAVDAARAAFPAWSATSVSNRARVMLKLQALIREHTQELAELLSSEHGKTVDDAKGDIFRGLEVVEH-ACSVPSLQmGETMQNVATGVDCHSYRVPLGVCAGIAPFNFPAMIPLWMFPMAVVTGNTFVLKPSERVPLTAMYLAELTRRAGLPDGVLNIIHGTHDAV-NFICDSPHIKAISFVGSDAAGSHVHHR------GSANGKRVQANLGAQNHAVVLEDADPQAVVSALTAAAFGAAGQRCMAISRVVLVGRA-AACLPELVRKASALKLGAGLEPGSEVPPLNSKQAKERVERLIASGVRDGAVCdLDGRNAVVEGYpngnWVGPTIISNVKPEMELYKEEVFGPVLQVLTVDTLAEAIALINANPYGNGTALFTRSGAASRKFQYEVNVGQIGINL 510
                 5699********998777644454405689*****************************************************************************97.5566666647788888999999999********************************************************************99888.7***********************987......566779**********************************************99986.578999*******************************************99734588888887766669**********************************************************************99986 PP

>> TIGR03216  OH_muco_semi_DH: 2-hydroxymuconic semialdehyde dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  226.1   0.2   5.1e-70   1.5e-67       4     478 ..      80     550 ..      77     552 .. 0.90

  Alignments for each domain:
  == domain 1    score: 226.1 bits;  conditional E-value: 5.1e-70
   TIGR03216   4 fidGafv..esektfedispvdgkviaevaeagkeevdaavkaaraalkgewgklsvaeraellkkvadeierrfdeflaaevadtGkpkslaskldiprgaanfrvfadvvknvateafematpdGkealnyavrkplGvvgvispwnlplllltwkvapalacGntvvvkpseetpatatllaevmeevGvpkGvynvvhGfGpdsaGefltrhpdvdaitftGetrtGeaimkaaadgvkevslelGGknaaivfadadldaavegvlrsaflntGqvclgtervy.verpifdrfvaalkekaeklklGvpedeaaelGpliskehrdkvlsyyklaveeGatvvtGGGvpelgdelaeGayvqptiwtglpdsarvvkeeifGpvchvapfdseeeviarandtayGlaasvwtedlsrahrvakklevGvvwvnswflrdlr.tpfGGsklsGiGr..eGGvhslefytelknvc 478
                 fi+ + v  +s + +    p++ +++++v  a++ee++aav aaraa+ + w  +sv++ra+++ k+   i++ ++e+ +   ++ Gk +  a k di rg         v +    e+++ +++ G +  +y  r plGv + i+p+n+p ++  w    a+  Gnt v+kpse  p ta  lae+ + +G+p+Gv n++hG  ++ a +f++  p+++ai+f G   +G+ + +  +   k v  +lG +n a+v+ dad +a+v +++ +af  +Gq c++  rv  v r      +  l  ka +lklG+  ++ +e+ pl sk+ +++v    +  v +Ga      G  ++ + + +G +v pti ++++ +    kee+fGpv +v   d+  e+ia++n++ yG  ++++t+  + + +   +++vG + +n      l   +f Gs+ s  G     G  s++fyt+ k+v 
  MMETSP1137-20121227|8173_1  80 FINNQEVdsKSVHDMPVLCPASQRILGHVPIATAEEMEAAVDAARAAFPA-WSATSVSNRARVMLKLQALIREHTQELAELLSSEHGKTVDDA-KGDIFRGLEVVEHACSVPSLQMGETMQ-NVATGVDCHSY--RVPLGVCAGIAPFNFPAMIPLWMFPMAVVTGNTFVLKPSERVPLTAMYLAELTRRAGLPDGVLNIIHG--THDAVNFICDSPHIKAISFVGSDAAGSHVHHRGSANGKRVQANLGAQNHAVVLEDADPQAVVSALTAAAFGAAGQRCMAISRVVlVGRA--AACLPELVRKASALKLGAGLEPGSEVPPLNSKQAKERVERLIASGVRDGAVCDLD-GRNAVVEGYPNGNWVGPTIISNVKPEMELYKEEVFGPVLQVLTVDTLAEAIALINANPYGNGTALFTRSGAASRKFQYEVNVGQIGINLPIPVPLPmFSFTGSRGSIQGDlnFYGKASVQFYTQWKTVT 550
                 56655552223334455789***************************998.***************************999999999998876.57******9998888877777777665.56778787776..88****************************************************************97..57899************************9999888899****************************************9997515665..567889999****************************************977665.66788999********************************************************************************9998888526899*999988852146999******999875 PP

>> TIGR03374  ABALDH: 1-pyrroline dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  199.5   0.2   6.6e-62   1.9e-59       4     421 ..      79     498 ..      76     537 .. 0.88

  Alignments for each domain:
  == domain 1    score: 199.5 bits;  conditional E-value: 6.6e-62
   TIGR03374   4 lliegklvageg.ekqavynpatgevileiaeasaeqvdaavraadaafaewgqttpkaraelllkladaieenaevfaklesrncgkplhavlndeipaivdvfrffagaarclsglaageyleghtsmirrdpvgvvasiapwnyplmmaawklapalaagncvvlkpseitpltalklaelakd.ilpagvvnvlfgrgktvgdaltghekvrmvsltgsiatgehilahtaasikrthmelggkapvivfddadidavvegvrtfgfynagqdctaacriyaqrgiydelveklgkavatlkigapedestelgplsslahlervsaaveeakalshikvitggekv.kg..kgyyfaptllagakqddaivqkevfgpvvsitvfddeeqvvrwandsryglassvwtkdvgrahrls 421
                 l+i+ + v+ +    ++v  pa+  ++ +++ a ae+++aav aa aaf  w  t+   ra ++lkl   i e ++++a+l s + gk +  +  d      +v    +       g +  +   g      r p+gv a iap+n+p m+  w +  a+ +gn  vlkpse  plta++lael++   lp gv+n++ g  + v + +   ++++ +s+ gs a+g+h+ +  +a  kr + +lg +   +v++dad +avv  + +  f  agq c a  r+        + + +l +  ++lk+ga  +  +e+ pl s+   erv +++      + +  + g + v +g  +g +  pt++++ k + ++ ++evfgpv+ + + d  ++ +   n+  yg  ++++t+    + ++ 
  MMETSP1137-20121227|8173_1  79 LFINNQEVDSKSvHDMPVLCPASQRILGHVPIATAEEMEAAVDAARAAFPAWSATSVSNRARVMLKLQALIREHTQELAELLSSEHGKTVDDAKGDIFRG-LEVVEHACSVPSLQMGETMQNVATGVDCHSYRVPLGVCAGIAPFNFPAMIPLWMFPMAVVTGNTFVLKPSERVPLTAMYLAELTRRaGLPDGVLNIIHGTHDAV-NFICDSPHIKAISFVGSDAAGSHVHHRGSANGKRVQANLGAQNHAVVLEDADPQAVVSALTAAAFGAAGQRCMAISRVVLVGRA-AACLPELVRKASALKLGAGLEPGSEVPPLNSKQAKERVERLIASGVRDGAVCDLDGRNAVvEGypNGNWVGPTIISNVKPEMELYKEEVFGPVLQVLTVDTLAEAIALINANPYGNGTALFTRSGAASRKFQ 498
                 67777777776525689***********************************************************************999887665544.5676766666666678888888889999999****************************************************97516***********98777.678899***********************************************************************9765444.4555566666789***************************9999888888888888765425555899******************************************************9755544444 PP

>> TIGR03240  arg_catab_astD: succinylglutamic semialdehyde dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  194.1   0.2   2.9e-60   8.4e-58      15     431 ..      94     512 ..      79     529 .. 0.90

  Alignments for each domain:
  == domain 1    score: 194.1 bits;  conditional E-value: 2.9e-60
   TIGR03240  15 lesldpvtqevlwqgkaasaaqvekavkaarkafpawarlsleeriavvkrfaelleeekeelaeviaketgkplweartevasmvakvaisikayeertGekeseladakavlrhr.phGvlavfGpynfpGhlpnGhivpallaGntvvfkpseltplvaeetvklwekaGlpaGvlnlvqGaretGkalaaeedidGllftGssntGallhrqlagrpekilalelGGnnplvveevkdidaavhlivqsafisaGqrctcarrllvkdgaeGdallerlvevaerltvgkydaepqpflGavisekaakellaaqekllalggksllelkqlee....eaalltpgii.dvtevaevpdeeyfgpllkvlrykdfdealaeanntrfGlaaGllsddrelydkflleiraGivnwnkpl 431
                 +  l p++q  l +   a+a+++e+av aar+afpaw+++s+++r+ v+ + ++l++e+ +elae+++ e gk++ +a++++   ++ v+ +    + + Ge+ +++a++     +r p Gv a + p+nfp  +p      a+++Gnt v+kpse  pl+a  + +l ++aGlp+Gvln++ G++++ + + ++++i  + f Gs ++G ++h++ + + +++ a +lG  n  vv e +d +a+v  +  +af +aGqrc    r+++      +a l +lv  a++l++g+   ep   + ++ s++a++++    ++ ++ g+   l+ +++      +   + p+ii +v    e+  ee+fgp+l+vl ++++ ea+a  n+  +G  + l + + +  +kf  e+  G +  n p+
  MMETSP1137-20121227|8173_1  94 MPVLCPASQRILGHVPIATAEEMEAAVDAARAAFPAWSATSVSNRARVMLKLQALIREHTQELAELLSSEHGKTVDDAKGDIFRGLEVVEHACSVPSLQMGETMQNVATGVDCHSYRvPLGVCAGIAPFNFPAMIPLWMFPMAVVTGNTFVLKPSERVPLTAMYLAELTRRAGLPDGVLNIIHGTHDAVNFICDSPHIKAISFVGSDAAGSHVHHRGSANGKRVQA-NLGAQNHAVVLEDADPQAVVSALTAAAFGAAGQRCMAISRVVLVGR--AAACLPELVRKASALKLGA-GLEPGSEVPPLNSKQAKERVERLIASGVRDGAVCDLDGRNAVVegypNGNWVGPTIIsNVKPEMELYKEEVFGPVLQVLTVDTLAEAIALINANPYGNGTALFTRSGAASRKFQYEVNVGQIGINLPI 512
                 55567999999999999*******************************************************************9999999999999999**********9998887689*****************99999*************************************************************************98888877766.8**********************************98777766544..4689*************98.567888899999****99999888888899988888766543212337789****9945677789******************************************************999988887 PP

>> TIGR03250  PhnAcAld_DH: putative phosphonoacetaldehyde dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  189.4   0.0     7e-59   2.1e-56      18     472 .]      93     553 ..      76     553 .. 0.86

  Alignments for each domain:
  == domain 1    score: 189.4 bits;  conditional E-value: 7e-59
   TIGR03250  18 vievrepydgevvgtvpkasvedvrralevaaayrs...kltryerskileraaellaarkeeisdlitlesGlskkdslyevgrvadvlklaaaevlrddgqifscdltphgkkrkvftlrepllgvisaitpfnhplnqvahkvapaiatnnrvvlkpsekvplsallladllyeaGlpeemlqvvtGdpreiadelit.dehvdlvtftGgvaiGkliaak..agykravlelGGndplivledadldraadlavkGsyknsGqrctavkrilvqesvadrftellvektralkyGdpldrsvdlGtvideaaaklfeerveeavaeGa.......rlllgnkrdGalyaptvldrvdpelalvreetfGpvspvirfkdiddairisnstayglssgvctnrldaitkliaelevGtvnvwevpGyrleltpfGGikdsGlGykeGvqea.lksftnlktyslpw 472
                  + v  p ++ ++g vp a++e++ +a++ a+a  +   + +  +r++++ +  +l++++++e+++l++ e G +  d+  ++ r  +v++ a +    + g+++    t  +     ++ r pl gv + i+pfn p          a+ t n  vlkpse+vpl+a++la+l + aGlp+ +l+++ G+  ++  ++i+ ++h++ ++f G+ a G ++ ++  a+ kr+  +lG  +  +vledad +   +   + ++  +Gqrc a+ r+++    a+ + e lv k+ alk G  l++ +++  +  ++a + +e+ + + v +Ga       + +++   +G    pt++ +v+pe++l +ee fGpv  v++++++ +ai++ n+  yg  +++ t + +a  k+  e++vG + +       l +  f G + s  G  +   +a ++ +t  kt++  w
  MMETSP1137-20121227|8173_1  93 DMPVLCPASQRILGHVPIATAEEMEAAVDAARAAFPawsATSVSNRARVMLKLQALIREHTQELAELLSSEHGKTVDDAKGDIFRGLEVVEHACSVPSLQMGETMQNVATGVD----CHSYRVPL-GVCAGIAPFNFPAMIPLWMFPMAVVTGNTFVLKPSERVPLTAMYLAELTRRAGLPDGVLNIIHGTHDAV--NFICdSPHIKAISFVGSDAAGSHVHHRgsANGKRVQANLGAQNHAVVLEDADPQAVVSALTAAAFGAAGQRCMAISRVVLVGRAAACLPE-LVRKASALKLGAGLEPGSEVPPLNSKQAKERVERLIASGVRDGAvcdldgrNAVVEGYPNGNWVGPTIISNVKPEMELYKEEVFGPVLQVLTVDTLAEAIALINANPYGNGTALFTRSGAASRKFQYEVNVGQIGINLPIPVPLPMFSFTGSRGSIQGDLNFYGKAsVQFYTQWKTVTTSW 553
                 356889999*******************99987655111566789**************************************************999999999876555544....568899*9.69**********9988888889******************************************98765..4565269*****************986447889*******************9999888889999************8776666666666.5799*********************************9999998332222233555667999***********************************************************************999765567788888888888888876665544255567777777666 PP

>> TIGR01238  D1pyr5carbox3: delta-1-pyrroline-5-carboxylate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  168.2   0.4   1.7e-52   5.1e-50      42     461 ..      81     509 ..      60     514 .. 0.85

  Alignments for each domain:
  == domain 1    score: 168.2 bits;  conditional E-value: 1.7e-52
   TIGR01238  42 vgekakaegeaq..pvknpadrkdivGqvseadaaevqeavdsavaafaewsatdakeraailerladlleshmpelvallvreaGktlsnaiaevreavdflryyak....qvedvldeesaka............lGavvcispwnfplaiftGqiaaalaaGntviakpaeqtsliaaravellqeaGvpagviqllpGrGedvGaaltsderiaGviftGstevarlinkalakredapvpliaetGGqnamivdstalaeqvvadvlasafdsaGqrcsalrvlcvqedvadrvltlikGamdelkvgkpirlttdvGpvidaeakqnllahiekmkakakkvaqvkledd..vesekgtfvaptlfe.ld.dldelkkevfGpvlhvvrykadeldkvvdkinakGygltlGvhsrieetvrqiekrakvGnvyvn 461
                 ++++ +++++++  pv  pa ++ i+G+v  a a+e+++avd+a aaf+ wsat   +ra ++ +l  l+ +h+ el  ll  e Gkt+++a  ++   ++ +++ +     q+ +++++                 lG+   i+p+nfp  i +     a+++Gnt + kp+e+ +l a++  el + aG+p gv++++ G  + v   + + ++i+ + f Gs +    +++  +   ++   + a+ G qn  +v   a ++ vv  + a+af +aGqrc a+  +++    a  + +l++ a + lk+g   +  ++v p+  ++ak+++++ i      +  v ++   +     + +g++v pt++  ++ +++  k+evfGpvl v+    d l++ +  ina+ yg    + +r   + r+ + +++vG + +n
  MMETSP1137-20121227|8173_1  81 INNQEVDSKSVHdmPVLCPASQR-ILGHVPIATAEEMEAAVDAARAAFPAWSATSVSNRARVMLKLQALIREHTQELAELLSSEHGKTVDDAKGDIFRGLEVVEHACSvpslQMGETMQN----VatgvdchsyrvpLGVCAGIAPFNFPAMIPLWMFPMAVVTGNTFVLKPSERVPLTAMYLAELTRRAGLPDGVLNIIHGTHDAVN-FICDSPHIKAISFVGSDAAGSHVHHRGS---ANGKRVQANLGAQNHAVVLEDADPQAVVSALTAAAFGAAGQRCMAISRVVLVGRAAACLPELVRKA-SALKLGAGLEPGSEVPPLNSKQAKERVERLIASGVRDGA-VCDLDGRNAvvEGYPNGNWVGPTIISnVKpEMELYKEEVFGPVLQVLT--VDTLAEAIALINANPYGNGTALFTRSGAASRKFQYEVNVGQIGIN 509
                 555665544442229****9876.79******************************************************************9998766666555444000155555555....2445688999999******************************************************************99775.678899***********99988865322...23345679*************************************955555566677888999988.78*****************************88665554.5555444443345789*******99624426777899*********85..789**************************************9998 PP

>> TIGR01236  D1pyr5carbox1: 1-pyrroline-5-carboxylate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  127.2   0.0   5.4e-40   1.6e-37      25     458 ..      70     492 ..      55     504 .. 0.83

  Alignments for each domain:
  == domain 1    score: 127.2 bits;  conditional E-value: 5.4e-40
   TIGR01236  25 lkskvleiPlviggkevvksne.lievvaPadhqaklakltnateedvkkaveaaldakkeWselpfadraaiflkaadllsgkyreeilaatmlgqsktvyqaeidavaelidffrfnvkyarelleqqPsvsapgelnkveyrpleGfvaaisPfnftaiaa.nlagaPalmGnvvvWkPsktavlsnyllmkileeaGlPpgvinfvpadgvkvsdvvladkdlaalhftGstavfkelwkkvasnldkyrnfPrivGetGGkdfvlvhpsadveevvaatirgafeyqGqkcsaasrlyvpkslwkelkeellaelkkvkvgdvddlssfmgavideksfakivkviekakkdpeeleilaGGkyddskGy....fvePtvveskdPkeklmkeeifGPvltvyvydddkykeilevvdstskyaltGavfakdre 458
                 ++s    iPl i+++ev ++ +  + v  Pa  q+ l+++  at e++++av+aa +a   Ws+  +++ra ++lk   l+   + +e++     +++ktv +a  d +   ++ + +     +  ++    +++   ++   yr   G  a i+Pfnf a+    +     + Gn+ v kPs+ + l++  l ++ + aGlP gv+n++ +      + +  ++++ a+ f Gs a  ++++++ + n        r+  + G ++  +v + ad + vv+a+  +af   Gq+c a+sr+ +          el+++++ +k+g   +  s + ++ ++++ +++ ++i +  +d +  + l  G+    +Gy    +v Pt++   +P+ +l+kee+fGPvl v   d     e + +++ +  y+   a+f++  +
  MMETSP1137-20121227|8173_1  70 AASMPGRIPLFINNQEVDSKSVhDMPVLCPA-SQRILGHVPIATAEEMEAAVDAARAAFPAWSATSVSNRARVMLKLQALIRE-HTQELAELLSSEHGKTVDDAKGD-IFRGLEVVEHACSVPSLQMGET-MQNVATGVDCHSYRVPLGVCAGIAPFNFPAMIPlWMFPMAVVTGNTFVLKPSERVPLTAMYLAELTRRAGLPDGVLNIIHGTHD-AVNFICDSPHIKAISFVGSDAAGSHVHHRGSAN------GKRVQANLGAQNHAVVLEDADPQAVVSALTAAAFGAAGQRCMAISRVVLVGRAA-ACLPELVRKASALKLGAGLEPGSEVPPLNSKQAKERVERLIASGVRDGAVCD-L-DGRNAVVEGYpngnWVGPTIISNVKPEMELYKEEVFGPVLQVLTVD--TLAEAIALIN-ANPYGNGTALFTRSGA 492
                 55667789********877776345666665.6789****************************************9999975.567888888899***********.5555566666555544333333.345666778889**999***********997651455556678************************************99955.55678899*****************99887665......458999****************************************98876655.5667899***********99*********************99999884444.3.444444444444449**************************98764..5678888884.6788888888887655 PP

>> TIGR02278  PaaN-DH: phenylacetic acid degradation protein paaN
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.8   0.5   3.2e-24   9.3e-22      37     432 ..     115     497 ..      86     508 .. 0.82

  Alignments for each domain:
  == domain 1    score: 74.8 bits;  conditional E-value: 3.2e-24
   TIGR02278  37 dlaaavayarevGgkalraltfheraaklkalakylserkeelyal.aattGatrrdnavdidGgigtlftyaskgrrelPdadlliedelealskdgsfqgrhiltpksGvavqinafnfPvwGlleklaPaflaGvPalvkPatatayvaealvklivesgllPeGalqlivGsvg..dlldhldsrdvvaftGsaataeklrahpnvleksirfsaeadslnaavlGedvtpdepefdlfvkeivreltakaGqkctairrvlvPkalveavlealkarlakvklGdPreedvklGplvsveqredveaavaallaagaevrlgdpeeld.....GaffaPtlllaeepeadavhateafGPvatllayddraeavrlaarGeGslvaslvtadpevarqf 432
                 +++aav  ar    +a  a ++ +ra+ + +l + + e+ +el +l + + G t  d+  di  g+ ++   +s  + ++ +        +  +   ++ +  h +    Gv+  i  fnfP    l  +  a ++G   ++kP+      a  l  l   +g lP+G l++i G+    +++    +   + f Gs a+++++       +++ r +a+  + n av+ ed+ p+     + v  +       aGq+c ai rv+   ++ +a l  l+ +  ++klG   e + ++ pl s++ +e ve+ +a  + +ga   l +++ +      G ++ Pt++   +pe   +++ e fGPv  +l+ d  aea+ l+ +      ++l+t   + +r+f
  MMETSP1137-20121227|8173_1 115 EMEAAVDAAR-AAFPAWSATSVSNRARVMLKLQALIREHTQELAELlSSEHGKTVDDAKGDIFRGLEVVEHACSVPSLQMGE--------T--MQNVATGVDCHSYRVPLGVCAGIAPFNFPAMIPLWMFPMAVVTGNTFVLKPSERVPLTAMYLAELTRRAG-LPDGVLNIIHGTHDavNFICDSPHIKAISFVGSDAAGSHVHH--RGSANGKRVQANLGAQNHAVVLEDADPQ-----AVVSALTAAAFGAAGQRCMAISRVVL-VGRAAACLPELVRKASALKLGAGLEPGSEVPPLNSKQAKERVERLIASGVRDGAVCDLDGRNAVVegypnGNWVGPTIISNVKPEM-ELYKEEVFGPVLQVLTVDTLAEAIALINANPYGNGTALFTRSGAASRKF 497
                 4556665555.457888999999****99999999*******998626788999999999**99999988777765543322........2..22333445678888889**********************************9988777766666666665.7*********985411444445567899******99998655..5567788889999999*********986.....5677777788899**********865.5778899999************************************************998876558999**********999987.58999*********************98876666677777777777666 PP

>> TIGR02288  PaaN_2: phenylacetic acid degradation protein paaN
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.2   1.1   1.5e-12   4.5e-10      85     466 ..     115     477 ..     110     495 .. 0.79

  Alignments for each domain:
  == domain 1    score: 36.2 bits;  conditional E-value: 1.5e-12
   TIGR02288  85 dtdalleaakkalkgwrdaGararvgvcleilqrlnkrslelahavmhttGqafmmafqaGGphaqdrGleavayayremsripetavwekpqGkkdplklekrfeivprGialvigcstfptwntypGlfaslatGnavlvkphpgailplaltvkvarevlaeaGfdpnlvalaaeeaeeevaqrlaldpavrivdftGsnafGewleq..narqaqvytekaGvntviiestddlkavlrnlafslslysGqmctttqa.ilvprdGirtdegrksydevaadlaaaidkllgddaravallGaiqsedtvar.iaearalGevl.ldskklehpefpdarvrtplllkvdaadeaayaeerfGpiafvvavddaahavelarr 466
                 +++a ++aa++a ++w       r+ v l++   + +++ ela+ +    G++      a G     rGle v +a      +p   + e  q       ++ +   vp G++  i+   fp+      +  ++ tGn+ ++kp ++  l    t     e+   aG+ p+ v+ +++   +++ + +  +p+++ + f Gs+a G  + +   a   +v +++   n+ ++    d +av+  l+ +    +Gq c +    +lv r      e  +     a +l+a +     ++   v  l + q+++ v r ia+    G v  ld ++     +p+ +   p ++     + + y ee+fGp+  v++vd  a+a+ l ++
  MMETSP1137-20121227|8173_1 115 EMEAAVDAARAAFPAWSATSVSNRARVMLKLQALIREHTQELAELLSSEHGKTVD---DAKGD--IFRGLEVVEHAC----SVPSLQMGETMQNVATG--VDCHSYRVPLGVCAGIAPFNFPAMIPLWMFPMAVVTGNTFVLKPSERVPL----TAMYLAELTRRAGL-PDGVLNIIHG-THDAVNFICDSPHIKAISFVGSDAAGSHVHHrgSANGKRVQANLGAQNHAVVLEDADPQAVVSALTAAAFGAAGQRCMAISRvVLVGRAAACLPE--LVRKASALKLGAGL-----EPGSEVPPLNSKQAKERVERlIASGVRDGAVCdLDGRNAVVEGYPNGNWVGPTIISNVKPEMELYKEEVFGPVLQVLTVDTLAEAIALINA 477
                 56889***************9999999999999999*********9999999865...45554..46******9986....57777777777765554..6778889****************9988888899***********999654....44445577778999.5555555554.699999*********************997622588899*****999*9999999999*******9999999*****986651556554332222..11222233333333.....3444444556666666555525666777877647899999999************999999*************************99775 PP

>> TIGR00407  proA: glutamate-5-semialdehyde dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.0     0.056        16      90     168 ..     199     275 ..     175     301 .. 0.75
   2 !    9.9   0.0   0.00022     0.065     299     355 ..     449     505 ..     436     511 .. 0.88

  Alignments for each domain:
  == domain 1    score: 2.0 bits;  conditional E-value: 0.056
   TIGR00407  90 eldeGLklervrvPlGvlgviyearPevi..vdvasLclktGnaviLkGgkeavrsnkalveviqdaleqtglpveavqli 168
                 ++  G+  +  rvPlGv   i      ++  + +  +++ tGn  +Lk ++    +   l+e+ ++a    glp + +++i
  MMETSP1137-20121227|8173_1 199 NVATGVDCHSYRVPLGVCAGIAPFNFPAMipLWMFPMAVVTGNTFVLKPSERVPLTAMYLAELTRRA----GLPDGVLNII 275
                 45678899999******9888554444440155678999*********9999888888888876654....5555555555 PP

  == domain 2    score: 9.9 bits;  conditional E-value: 0.00022
   TIGR00407 299 edfdkeflsldLsvkivedleeaiehirqygtkhsdailtedkknaekfvkevdsaa 355
                 e +++e   ++L+v +v+ l eai+ i+        a+ t++ ++++kf+ ev+   
  MMETSP1137-20121227|8173_1 449 ELYKEEVFGPVLQVLTVDTLAEAIALINANPYGNGTALFTRSGAASRKFQYEVNVGQ 505
                 56899999*********************99999*****************998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (568 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       104  (0.0253535); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                        21  (0.00511945); expected 4.1 (0.001)
Passed Fwd filter:                        14  (0.00341297); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.69u 0.16s 00:00:00.85 Elapsed: 00:00:00.80
# Mc/sec: 937.12
//
Query:       MMETSP1137-20121227|8174_1  [L=706]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.6e-24   84.6  28.4    2.4e-24   84.0  19.7    1.2  1  TIGR00813 sss: transporter, solute:sodium symporter (SSS) family
    7.2e-19   65.7  26.4    1.9e-16   57.7  18.3    2.2  1  TIGR02121 Na_Pro_sym: sodium/proline symporter
    1.1e-16   58.3  19.7    9.8e-12   41.9   1.9    2.3  2  TIGR03648 Na_symport_lg: probable sodium:solute symporter, VC_2705 subfamily
    1.8e-15   54.7  17.7    3.1e-13   47.4   2.1    2.2  2  TIGR02119 panF: sodium/pantothenate symporter


Domain annotation for each model (and alignments):
>> TIGR00813  sss: transporter, solute:sodium symporter (SSS) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.0  19.7   2.3e-27   2.4e-24       2     396 ..      74     482 ..      73     502 .. 0.78

  Alignments for each domain:
  == domain 1    score: 84.0 bits;  conditional E-value: 2.3e-27
   TIGR00813   2 flagrslgglvvaaslvasnisasqllGlpgeayasGlaiiflelaal...vllivlgllfvpvyikagvltmpeylekRFgkrilrilsvlililviflkisvdlfsgalllelvlGld..lylsllllalitilYtviGGlkAvvwtDtlqavimivgvlilpvvafsevggles.vvekakqaaptvvsvddllkleldpltsdlpwgalvfGliivallywcldqvivqRllaaksaksakkgvlisgvlkllpmllavlpGliaralytd..........vdpalagavq................qasdqaypllvvellp....pglaglflav.llaAvlStlssilnsastvfteDlYkkiirkaaekekkivsrgrvavlvaiviaivvaaaqsgqvlqlvqsafgilgapllavfvLglfw 396
                 f+ag+slg++v+ ++++as  s+ +++G+p ea+++G+  + +  + l   + ++ ++     + + ++ ++  ++++ RF +++lr++ +++l++ ++++++++ +     +++++Gl+     + +++ ++++ +  iGGl++v++tD  q+++mi+++++++       gg++s +++  +   p ++ +  + ++++   t  l w   ++ l++             qR++a+ + ks+k +  + ++   l ml+ v+ G i++ l +d          ++                        ++    + ++v +l+       + gl++ v  +aA++St++s+l++++ +++  +    +++a + +++++ +++v+ ++++++a+vva+   g + +l    +g+    +++ f++glf 
  MMETSP1137-20121227|8174_1  74 FVAGKSLGTFVTVMTIFASLFSGYTMVGVPNEAFRNGFTALRWIPSKLfmaFGYMGTSPRLRRISLIRHYHSPLDFVTDRFRSQLLRYVLFIVLLVPSIIYLAAQPITLKGNFNDLFGLEdnNVIAPVAICAFILALEWIGGLNVVAYTDAAQGILMIIAFVLMSSTLAALYGGYNSdIFNPTTYPEP-KFFQVPSAETQFAMWTFSLQW-ISFLALPHF-----------QQRTYASGNFKSMKLAYGVITLAPWLTMLVGVFSGTIGVYLLQDegnvanpftaIV-------AklmsasafgyyllqdeGNVANPFTAIVAKLMSasafGYISGLLILVgSIAAIISTADSLLIATAHMIMSEVVCVAFPNA-S-QARVAFASKVVSFFVMALALVVALTDDGALSDLANVQNGMTL-QAVPTFLIGLFA 482
                 89***********************************5554444333300033333333344455667789999*******************************9999999*******61145556677777788889***********************************66515555554444.223444555555555566777.566777888...........8*******************************************9*9866555522.......23444556778889855444444556788999976655566665554269***********************9666655.5.5****************************9999888777655.56899*****95 PP

>> TIGR02121  Na_Pro_sym: sodium/proline symporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.7  18.3   1.9e-19   1.9e-16      27     437 ..      69     507 ..      28     543 .. 0.75

  Alignments for each domain:
  == domain 1    score: 57.7 bits;  conditional E-value: 1.9e-19
   TIGR02121  27 nledyvlggrslgpfvaalsagasdmsgWlllGlPGalyvtGlsel.wiaiGlliGayinwklvakrlrvytevakdaitlPdflekrledkskvlrivsaliilvfftlytssGlvaGgklfesafGldyklalligali..vviytflGGflavswtdlvqgllmlvalvlvPivallklgg.lseileaveaidpekldllkgasviai.isllaWGlGyfGqPhiivrfmaiksakelkkarligisWmilsllGavlvglvGiayvekvpgv.....evadk..................ekifillskvlfn....PliaGll.laailaaimstissqllvsssalaedlykallkkeasekelvlvgrlsvlvvaiiaivlalnpdssvlelvsyaWaGfGaafgpvvllslywk.rltragal..agmvigavtvivw 437
                 ++e+++++g+slg+fv+ ++  as  sg+ ++G+P   +  G+++l wi   l + a   ++  ++rlr  + +++    l df+++r+   s++lr v  +++lv  ++y ++  ++    f+  fGl+ +  +  +a++  ++   ++GG   v++td+ qg+lm++a+vl+        gg  s+i++  +  +p+ +++ +  +  a+   +l W + +   Ph   r  a  + k++k a  + +    l++l  v+ g +G+  ++++++v     +++ k                   + f  ++ +l+      +i+Gll l   +aai+st +s l+ ++  ++ ++   +   +as+  +   +++  + v+ +a+v+al+ d  + +l ++   G+     p  l+ l+   ++t ++ +   g  +g +t +v 
  MMETSP1137-20121227|8174_1  69 EMENHFVAGKSLGTFVTVMTIFASLFSGYTMVGVPNEAFRNGFTALrWIPSKLFM-A-FGYMGTSPRLRRISLIRHYHSPL-DFVTDRFR--SQLLRYVLFIVLLVPSIIYLAAQPITLKGNFNDLFGLEDNNVIAPVAICafILALEWIGGLNVVAYTDAAQGILMIIAFVLMSSTLAALYGGyNSDIFNPTTYPEPKFFQVPSAETQFAMwTFSLQW-ISFLALPHFQQRTYASGNFKSMKLAYGVITLAPWLTMLVGVFSGTIGVYLLQDEGNVanpftAIVAKlmsasafgyyllqdegnvANPFTAIVAKLMSasafGYISGLLiLVGSIAAIISTADSLLIATAHMIMSEVVC-VAFPNASQARVAFASKVVSFFVMALALVVALTDDGALSDL-ANVQNGMTLQAVPTFLIGLFATpNFTPHAWViaLGAAVGFITTVVI 507
                 57899**************************************987599888876.4.479999********777665554.9******6..89************************999********99988776666511556678**********************9998665555555168999*************9887755551567888.89**********************9987777777889999999999999888764321111133333445556666666665555233555555554411114788875278899*********999999999988875.55678999999999**99999999*******998887777.5667888888888888888865233333322003344555544443 PP

>> TIGR03648  Na_symport_lg: probable sodium:solute symporter, VC_2705 subfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.9   1.9   9.6e-15   9.8e-12      23     195 ..      69     246 ..      66     255 .. 0.79
   2 !   21.7   6.4   1.2e-08   1.2e-05     362     483 ..     387     510 ..     363     539 .. 0.78

  Alignments for each domain:
  == domain 1    score: 41.9 bits;  conditional E-value: 9.6e-15
   TIGR03648  23 stkefyvagrkvpavanGmAtaadWmsaAsfismagliallGydglaylmGWtgGyvlla...lllApylRkfg...kftvp.dfvgdRyysktaRlvaviaailisftYvvgqirgvGvvfsrflevdielgv..liglavvlvyavlgGmkgvtytqvaqyvvlivaylvpvvflslklt 195
                 ++++++vag+++ +++  m + a  +s    +++      +G+++l ++       +++a   +   p lR+ +   ++  p dfv dR+ s++ R v  i++++ s++Y+++q   +   f  +++++ +  +  +   a +l+   +gG+  v+yt +aq +++i+a+++    l++  +
  MMETSP1137-20121227|8174_1  69 EMENHFVAGKSLGTFVTVMTIFASLFSGYTMVGVPNEAFRNGFTALRWIPS----KLFMAfgyMGTSPRLRRISlirHYHSPlDFVTDRFRSQLLRYVLFIVLLVPSIIYLAAQPITLKGNFNDLFGLEDNNVIapVAICAFILALEWIGGLNVVAYTDAAQGILMIIAFVLMSSTLAALYG 246
                 567889999999999999999999999999999999998899988876643....3333311144678888875443677666*******************************8888888888877755444411444567888999************************9988887655 PP

  == domain 2    score: 21.7 bits;  conditional E-value: 1.2e-08
   TIGR03648 362 via.lvaAGglaAAlstaaGLllvissaisHDllkkllnpkasekkrllvarvallvviviaaylalnkpgfiaqvvalAFglaaaslFpalvlGifwkra.nkegai..agmlaGllvtllyivl 483
                 +++ l+  G++aA +sta+ Ll++ +  i  +++     p+as+++  ++++v+ + v+++a ++al++ g ++++  +  g++ +++ p++++G+f     + ++ +  +g  +G+++t++  ++
  MMETSP1137-20121227|8174_1 387 ISGlLILVGSIAAIISTADSLLIATAHMIMSEVVCV-AFPNASQARVAFASKVVSFFVMALALVVALTDDGALSDLANVQNGMTLQAV-PTFLIGLFATPNfTPHAWViaLGAAVGFITTVVINYT 510
                 55525789*********************9999875.569******************************************998875.********87541433333113555555555443333 PP

>> TIGR02119  panF: sodium/pantothenate symporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.4   2.1     3e-16   3.1e-13      27     279 ..      65     315 ..      30     336 .. 0.74
   2 !   12.9   4.6   8.6e-06    0.0088     306     385 ..     374     453 ..     367     482 .. 0.86

  Alignments for each domain:
  == domain 1    score: 47.4 bits;  conditional E-value: 3e-16
   TIGR02119  27 ktdsflqeyflGnrslgGfvlamtlvatyvsassfigGpGiayklG...lGwvllamiqvptvylvlgvlGkkfailarklnavtlvdllkaryknkllvllsslsllvfllsaivaqfiGGarllesltGlsyltalllfsl..svliyvliGGfravvltdalqgivmllgtiilliavikaggGve.kiveklkeidpnlvtpfgadgsldkafvasfwilvgiGvvglpqiavralsykdskalhraliigtivv 279
                 ++d  ++++f+ ++slg fv  mt+ a+  s  +++g p  a++ G   l w+  + + ++ +y+  +   ++++++ r+++  +  d++ +r++++ll ++  ++llv  +  ++aq i     ++ l Gl  ++ +   ++   +l    iGG+  v+ tda qgi+m+++ +++  ++    gG + +i +  +  +p++ +  +a+     +f +  + l  i  ++lp+   r+ +  + k+++ a  + t+  
  MMETSP1137-20121227|8174_1  65 DGDGEMENHFVAGKSLGTFVTVMTIFASLFSGYTMVGVPNEAFRNGftaLRWI-PSKLFMAFGYMGTSPRLRRISLI-RHYH--SPLDFVTDRFRSQLLRYVLFIVLLVPSIIYLAAQPITLKGNFNDLFGLEDNNVIAPVAIcaFILALEWIGGLNVVAYTDAAQGILMIIAFVLMSSTLAALYGGYNsDIFNPTTYPEPKFFQVPSAET----QFAMWTFSLQWISFLALPHFQQRTYASGNFKSMKLAYGVITLAP 315
                 23446899************************************993323454.46666777777777777888877.4444..457*********************************************98876655444004555678********************976655444444566652688999999****99999988....55555556666789************999999987765555444 PP

  == domain 2    score: 12.9 bits;  conditional E-value: 8.6e-06
   TIGR02119 306 vipllalkvlppilaGif.laaplaaimstvdsllllssstlikdlylnylekeakekkvkkisllitlllgllvllaalk 385
                 ++  l+     ++++G++ l + +aai+st dsll+ ++ +++ ++   +++ +a++ +v+  s ++++++ +l l++al 
  MMETSP1137-20121227|8174_1 374 IVAKLMSASAFGYISGLLiLVGSIAAIISTADSLLIATAHMIMSEVVCVAFP-NASQARVAFASKVVSFFVMALALVVALT 453
                 6777888899999999752789****************99999999777776.678899***************9999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (706 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       169  (0.0411994); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.56u 0.17s 00:00:00.73 Elapsed: 00:00:00.49
# Mc/sec: 1901.72
//
Query:       MMETSP1137-20121227|8175_1  [L=528]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   1.8e-200  664.7   0.0   2.1e-200  664.5   0.0    1.0  1  TIGR01438 TGR: thioredoxin and glutathione reductase
     6e-116  386.1   0.0   7.4e-116  385.8   0.0    1.0  1  TIGR01421 gluta_reduc_1: glutathione-disulfide reductase
   5.8e-114  378.9   0.0   7.1e-114  378.6   0.0    1.0  1  TIGR01424 gluta_reduc_2: glutathione-disulfide reductase
    5.5e-77  257.2   0.0    7.1e-77  256.9   0.0    1.1  1  TIGR01350 lipoamide_DH: dihydrolipoyl dehydrogenase
    7.3e-77  256.7   0.0    9.1e-77  256.4   0.0    1.0  1  TIGR01423 trypano_reduc: trypanothione-disulfide reductase
    1.5e-71  239.6   0.0    1.9e-71  239.3   0.0    1.0  1  TIGR02053 MerA: mercuric reductase
    3.7e-49  165.6   0.0    4.7e-49  165.3   0.0    1.0  1  TIGR03452 mycothione_red: mycothione reductase
    6.9e-20   69.0   0.0    4.2e-19   66.4   0.0    1.9  2  TIGR03385 CoA_CoA_reduc: CoA-disulfide reductase
    2.4e-13   47.2   0.0      4e-13   46.5   0.0    1.2  1  TIGR02374 nitri_red_nirB: nitrite reductase [NAD(P)H], large subunit
    9.2e-10   35.6   0.0    8.5e-09   32.4   0.0    2.1  2  TIGR01292 TRX_reduct: thioredoxin-disulfide reductase
    3.1e-09   33.9   2.6    0.00053   16.7   0.2    3.9  3  TIGR01316 gltA: glutamate synthase (NADPH), homotetrameric
    4.7e-07   26.7   0.0    9.8e-05   19.1   0.0    2.4  2  TIGR04018 Bthiol_YpdA: putative bacillithiol system oxidoreductase, YpdA family
    7.5e-07   25.7   0.3     0.0044   13.3   0.0    2.2  2  TIGR03997 mycofact_OYE_2: mycofactocin system FadH/OYE family oxidoreductase 2
    4.7e-06   23.8   0.0    0.00011   19.3   0.0    2.4  2  TIGR03169 Nterm_to_SelD: pyridine nucleotide-disulfide oxidoreductase family protein
    5.3e-06   22.3   0.1    7.8e-06   21.7   0.0    1.1  1  TIGR01372 soxA: sarcosine oxidase, alpha subunit family
    1.4e-05   22.0   0.1     0.0029   14.3   0.0    2.6  2  TIGR01317 GOGAT_sm_gam: glutamate synthase, NADH/NADPH, small subunit
    0.00011   17.6   0.1     0.0017   13.7   0.0    2.4  2  TIGR03315 Se_ygfK: putative selenate reductase, YgfK subunit
    0.00022   18.0   0.2     0.0039   13.9   0.1    2.3  2  TIGR00275 TIGR00275: flavoprotein, HI0933 family
    0.00026   17.5   0.4       0.26    7.6   0.0    3.3  4  TIGR01318 gltD_gamma_fam: glutamate synthase, small subunit
    0.00054   16.9   0.6     0.0013   15.6   0.2    1.7  2  TIGR03378 glycerol3P_GlpB: glycerol-3-phosphate dehydrogenase, anaerobic, B subunit
     0.0013   14.8   0.1     0.0024   13.9   0.1    1.4  1  TIGR01816 sdhA_forward: succinate dehydrogenase, flavoprotein subunit
     0.0014   15.1   0.1      0.088    9.2   0.0    2.6  2  TIGR03143 AhpF_homolog: putative alkyl hydroperoxide reductase F subunit
     0.0019   14.6   0.1      0.061    9.6   0.0    2.5  2  TIGR03140 AhpF: alkyl hydroperoxide reductase, F subunit
     0.0042   14.3   0.2      0.013   12.6   0.1    1.7  2  TIGR03467 HpnE: squalene-associated FAD-dependent desaturase
      0.005   13.8   0.1     0.0085   13.0   0.0    1.3  1  TIGR03364 HpnW_proposed: FAD dependent oxidoreductase TIGR03364
     0.0082   13.7   0.3       0.47    7.9   0.1    2.8  3  TIGR02032 GG-red-SF: geranylgeranyl reductase family
     0.0094   13.0   0.3      0.024   11.7   0.0    1.7  2  TIGR00292 TIGR00292: thiazole biosynthesis enzyme
  ------ inclusion threshold ------
      0.014   11.9   0.2      0.025   11.1   0.1    1.4  1  TIGR02734 crtI_fam: phytoene desaturase
      0.016   12.2   0.0      0.022   11.7   0.0    1.3  1  TIGR01790 carotene-cycl: lycopene cyclase family protein
       0.03   10.6   0.3       0.12    8.6   0.0    2.0  2  TIGR01812 sdhA_frdA_Gneg: succinate dehydrogenase or fumarate reductase, flavoprotein subunit
      0.052   10.4   0.7       0.21    8.5   0.2    2.0  2  TIGR02352 thiamin_ThiO: glycine oxidase ThiO


Domain annotation for each model (and alignments):
>> TIGR01438  TGR: thioredoxin and glutathione reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  664.5   0.0  1.6e-202  2.1e-200       2     483 ..      41     528 .]      40     528 .] 0.97

  Alignments for each domain:
  == domain 1    score: 664.5 bits;  conditional E-value: 1.6e-202
   TIGR01438   2 dydliviGgGsGGlaaakeaaklgakvllldfvkptpqGtkwGiGGtcvnvGcipkklmhqaallGkalkdskkyGwnveeqvkhdweklskavqdrikslnfsyrvalrekkvkyinayaelvdkdvikatdkkkkeeilsakrvliatGlrpkypddieGakelsitsddlfslkkvpGktlvvGasyvalecaGflaalgldvtvlvrsillrGfdqdcavkvkeylkeqGvkfkeqvlpkkvekvea.kvlvkftdkd.ntieeeydtvlyaiGrkadlkklnlenvgvkvnkksgkiladelertnvpsiyavGdive........dkleltpvaikaGklladrlfkdskeivdyenvpttvftpleygavGlseekavekyGeenvevfhseftpleysvpsrkdsskcyakvvclkdedervvGlhfvGpnagevtqGfavalrvgvkkkdldntigihpvsaeefvklsvtkrsGsdaaktGc 483
                 ++dl+viGgGsGGla++k+aa++g+kv++ dfvkptp Gt w +GGtcvnvGcipkklmh aallG+ +kd+ +yGw++  +  h we ++++vq++i slnf+yr +l e+ vky+naya + d+++++++dkk+ke  ++a++++iatG rp+yp di+Ga+e +itsdd+fs ++ pGktlvvGasyvalecaGf++++g+d tv++rsi+lrGfdq++a++v+ y+ e+G+ f+e+ +p+ ve +++ k++v+++ kd  ++++e+dtvl+aiGrk ++ +++l+++gv +   +gk+++   ertnvp iya+Gdi++        + +eltpvai+aG+lladrl+ +++  +dy +vpttv+tpley+++Gl+ee+a++ yGee vevfhs+f+ple+++p+r d + cy k++c  +e+ rv+Glh+ Gp age+ qGfava+++g +k ++d+t+gihp+  eef+ ls tkrsG+ a k+Gc
  MMETSP1137-20121227|8175_1  41 HFDLLVIGGGSGGLACSKRAAQHGKKVAVCDFVKPTPIGTTWKLGGTCVNVGCIPKKLMHTAALLGEGMKDAVSYGWEMPAEPTHKWETMVENVQQHIFSLNFGYRSDLMENSVKYLNAYATFLDPHTVRTVDKKGKEVDVTADTIVIATGGRPNYP-DIPGAREHCITSDDIFSQRTPPGKTLVVGASYVALECAGFIKGVGFDTTVMMRSIPLRGFDQQMAKQVQTYMMEHGIPFIEGAVPTAVELLDSgKKKVTWSLKDgSSASDEFDTVLLAIGRKVCTSDIGLDKAGVSLS-PNGKVPVA-SERTNVPHIYAIGDIIDgdslsppsNTTELTPVAIQAGRLLADRLYAGATLEMDYTGVPTTVYTPLEYACIGLAEEDAIKTYGEERVEVFHSYFKPLEWTLPHRGD-NACYCKLICDLQENLRVIGLHVCGPSAGEMAQGFAVAMKCGATKAHFDQTVGIHPTVVEEFTILSTTKRSGASAEKKGC 528
                 69***********************************************************************************************************************************************************.5*******************************************************************************************98888998866525789**************************996.689**997.589************9733333333578*****************************************************************************9.9*****************************************************************************9 PP

>> TIGR01421  gluta_reduc_1: glutathione-disulfide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  385.8   0.0  5.6e-118  7.4e-116       2     448 ..      41     512 ..      40     514 .. 0.90

  Alignments for each domain:
  == domain 1    score: 385.8 bits;  conditional E-value: 5.6e-118
   TIGR01421   2 eydylviGGGsGGiasarraaeyGakallve.........ekklGGtcvnvGcvPkkvmwyaaslaelledaadyGfksekenkfnfkelkekrdayvdrlngiyqknlekekvelieGyaeftkdetvevngke.....ytakhiliatGgkpsipeniPGa.elgldsdgffaleelPkrvvivGaGyiavelaGvlhglGsktdlvirrervlrsfdelisekvveelekaglevhklskvvkvektveg..klvitledg.keiedvdeliwaiGrkpntkdlglekvgvkldekgyikvdeyqntnvegiyalGdvv.G........kveltPvaiaaGrklserlfegkedakldyenvPtvvfshPeigtvGltekeaiekyGkenvkvykssftamyyaltkek.qksrlklvcagkee.kvvGlhiiGlgvdellqGfavaikmGatkadfdntvaihPtsseelvt 448
                 ++d+lviGGGsGG+a  +raa++G k+++ +         + klGGtcvnvGc+Pkk+m  aa l e ++da  yG+++  e + ++++++e+ ++++  ln  y  +l +++v+ ++ ya+f + +tv   +k+     +ta+ i+iatGg+p+ p +iPGa e  ++sd++f     P++  +vGa y+a+e aG ++g+G +t +++r   +lr+fd+ ++++v   + ++g++  + ++++ ve   +g  k++  l+dg + +++ d+++ aiGrk  t+d+gl+k+gv+l  +g++ v     tnv+ iya+Gd++ G         +eltPvai+aGr l++rl+ g  + ++dy  vPt v++  e + +Gl+e++ai+ yG+e+v v++s f ++ ++l ++  + +  kl+c  +e+ +v+Glh+ G ++ e+ qGfava+k Gatka fd+tv ihPt  ee+  
  MMETSP1137-20121227|8175_1  41 HFDLLVIGGGSGGLACSKRAAQHGKKVAVCDfvkptpigtTWKLGGTCVNVGCIPKKLMHTAALLGEGMKDAVSYGWEMPAEPTHKWETMVENVQQHIFSLNFGYRSDLMENSVKYLNAYATFLDPHTVRTVDKKgkevdVTADTIVIATGGRPNYP-DIPGArEHCITSDDIFSQRTPPGKTLVVGASYVALECAGFIKGVGFDTTVMMRS-IPLRGFDQQMAKQVQTYMMEHGIPFIEGAVPTAVELLDSGkkKVTWSLKDGsSASDEFDTVLLAIGRKVCTSDIGLDKAGVSLSPNGKVPVAS-ERTNVPHIYAIGDIIdGdslsppsnTTELTPVAIQAGRLLADRLYAGA-TLEMDYTGVPTTVYTPLEYACIGLAEEDAIKTYGEERVEVFHSYFKPLEWTLPHRGdNACYCKLICDLQENlRVIGLHVCGPSAGEMAQGFAVAMKCGATKAHFDQTVGIHPTVVEEFTI 512
                 79**************************986333333333468***********************************************************************************987654444455889****************.****75899****************************************99985.8*****************************9999988877224555677873567889********************************976.78************95333333332579*****************986.689***********************************************998875167899****7655439********************************************975 PP

>> TIGR01424  gluta_reduc_2: glutathione-disulfide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  378.6   0.0  5.3e-116  7.1e-114       3     443 ..      42     511 ..      40     514 .. 0.92

  Alignments for each domain:
  == domain 1    score: 378.6 bits;  conditional E-value: 5.3e-116
   TIGR01424   3 ydlfviGaGsGGvraarlaaalGakvaiaeedl.........vGGtcvirGcvPkkllvyasefaeeledakgyGwe.vekaefdwkkllakkdkeiarlsglykkllakagvellegraelvdantvevle.dgk..tytaekiliavGgrpvkpelPGa.elaitsdeafdletlPksilvvGgGyiavefagifrGlGvkvtllyrgekilrgfdddvraelaeeleerGirillktvlksiekvddG.lkvtls.kdeei...vadvvllatGrvPnvkglgleaaGvelndagaiavdeysrtsvpsiyavGdvtd.........rinltPvaikeaaafaetefknnptkadhdlvatavfsqPevatvGlseeearekftdd.ievyraefrPmkatlsGr.qekillklvvdekdd.kvlGahvvGedaaeiiqlvaialkaGatkkdfdstvavhPssaeelv 443
                 +dl+viG+GsGG++++++aa++G+kva+++  +         +GGtcv  Gc+Pkkl+  a+ ++e ++da +yGwe   +   +w++++++ ++ i  l+  y++ l + +v+ l++ a+  d++tv+  + +gk   +ta+ i+ia+Ggrp  p++PGa e +itsd++f+ +t P + lvvG+ y+a e ag ++G+G  +t ++r   +lrgfd+++ +++++ + e+Gi  +  +v +++e +d G  kvt s kd++    + d+vlla+Gr+  ++ +gl++aGv+l+ +g + v    rt+vp iya+Gd+ d           +ltPvai+ ++ +a+  + +   ++d+  v t+v++  e a +Gl+ee+a + ++++ +ev+++ f+P++ tl  r  + +  kl+ d +++ +v+G hv+G+ a+e++q+ a+a+k+Gatk++fd+tv++hP+  ee+ 
  MMETSP1137-20121227|8175_1  42 FDLLVIGGGSGGLACSKRAAQHGKKVAVCDFVKptpigttwkLGGTCVNVGCIPKKLMHTAALLGEGMKDAVSYGWEmPAEPTHKWETMVENVQQHIFSLNFGYRSDLMENSVKYLNAYATFLDPHTVRTVDkKGKevDVTADTIVIATGGRPNYPDIPGArEHCITSDDIFSQRTPPGKTLVVGASYVALECAGFIKGVGFDTTVMMRS-IPLRGFDQQMAKQVQTYMMEHGIPFIEGAVPTAVELLDSGkKKVTWSlKDGSSasdEFDTVLLAIGRKVCTSDIGLDKAGVSLSPNGKVPVAS-ERTNVPHIYAIGDIIDgdslsppsnTTELTPVAIQAGRLLADRLYAGATLEMDYTGVPTTVYTPLEYACIGLAEEDAIKTYGEErVEVFHSYFKPLEWTLPHRgDNACYCKLICDLQENlRVIGLHVCGPSAGEMAQGFAVAMKCGATKAHFDQTVGIHPTVVEEFT 511
                 9*****************************99899******************************************5578999********************************************977656665689********************659********************************************996.79**************************************777777764444411145799*****************************975.8************975333322222689****************************************************986549**************9872456899*****65544*********************************************96 PP

>> TIGR01350  lipoamide_DH: dihydrolipoyl dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  256.9   0.0   5.4e-79   7.1e-77       1     446 [.      41     509 ..      41     518 .. 0.87

  Alignments for each domain:
  == domain 1    score: 256.9 bits;  conditional E-value: 5.4e-79
   TIGR01350   1 eydvvviGgGpgGYvaAiraaqlglkvalve.........keklGGtClnvGCiPtKalLksaevveelkeakelgieven.vkldlekllerkekvvkklvgGvkaLlkknkvevikGeaklldkkeve.vkkekkekkleakniiiAtGseprelplkleedekvvitseealelkevpeslvivGgGviGvEfasifaklGvkvtvielldrilpaldaevskvlkkklkkkgvkiltna...kvtevekeedevvveakkkevetleaekvLvavGrkpnleelgleklgveldergaikvdeelrtnvpgiyaiGDvigk.........lmLAhvAskegvvaaekiagkekseidykavPsviytePevasvGlteeqakeeg..ievkvgkfpfaangkalal.eetdGfvkvivdkktg.eilGahivgaeaseliselalaveleltveelaktihpHPtlsEa 446
                 ++d++viGgG gG  ++ raaq+g+kva+ +           klGGtC+nvGCiP K + ++a + e +k+a ++g e+    +  +e+++e+ ++ + +l+ G +  l +n v+ ++ +a++ld+++v+ v+k+ ke  ++a++i+iAtG +p+ + ++ ++++   its+++++ ++ p + ++vG+ ++ +E a + + +G + tv+ + +  l  +d++++k+++  + ++g+ ++++a    v+ + + +++v+ + k++   + e + vL+a+Grk  ++++gl+k gv+l  +g+++v +  rtnvp+iyaiGD+i++         + L  vA + g + a+++   ++ e+dy+ vP+ +yt  e a +Gl ee+a + +   +v+v +  f+    +l   +++ ++ k+i+d + + +++G+h+ g++a e+ + +a+a+++++t  +  +t+  HPt+ E 
  MMETSP1137-20121227|8175_1  41 HFDLLVIGGGSGGLACSKRAAQHGKKVAVCDfvkptpigtTWKLGGTCVNVGCIPKKLMHTAALLGEGMKDAVSYGWEMPAePTHKWETMVENVQQHIFSLNFGYRSDLMENSVKYLNAYATFLDPHTVRtVDKKGKEVDVTADTIVIATGGRPNYPDIPGAREH--CITSDDIFSQRTPPGKTLVVGASYVALECAGFIKGVGFDTTVM-MRSIPLRGFDQQMAKQVQTYMMEHGIPFIEGAvptAVELLDSGKKKVTWSLKDGSSASDEFDTVLLAIGRKVCTSDIGLDKAGVSLSPNGKVPVAS-ERTNVPHIYAIGDIIDGdslsppsntTELTPVAIQAGRLLADRLYAGATLEMDYTGVPTTVYTPLEYACIGLAEEDAIKTYgeERVEVFHSYFKPLEWTLPHrGDNACYCKLICDLQENlRVIGLHVCGPSAGEMAQGFAVAMKCGATKAHFDQTVGIHPTVVEE 509
                 59**************************9763323332223589***********8876666667788999*******8777***********************************************736666666899***************999666665..9**************************************9996.5566699*********************998622267778899999**9999999999************************************76.59************987222222222457789***********9977878*************************99877623456677777888888775426799********655439****************************************9985 PP

>> TIGR01423  trypano_reduc: trypanothione-disulfide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  256.4   0.0   6.9e-79   9.1e-77       3     472 ..      41     515 ..      39     525 .. 0.90

  Alignments for each domain:
  == domain 1    score: 256.4 bits;  conditional E-value: 6.9e-79
   TIGR01423   3 aydlvvigagsggleagwnaaslykkrvavvdlqkvhgppfyaalggtcvnvgcvpkklmvtgaqymdtlresagfgweldaesvkanwkaliaaknkavldindsyedmfkdteglefflgfgaledknvvlvresadpkskvkerldaeyillatgswpqmlkiegi.elcissneafyleeapkrvltvgggyisvefagifnaykavggkvdlayrndmilrgfdselrkeltkqlvangidvrtnenpakveknadgskhvvfe....sgkeldvdvvmlaigrlprsqtlqldkvgveladkgaikvdeysktnvdniyaigdvtd.........rvmltpvainegaavvdtvfaskprktdhtkvasavfsippigvcglveeeaakky..ekvavyessftplmhnisgskykkfvvkivtdhad.gevlgvhllgdsspeiiqavaiclklnakisdfyntigvhptsaeelcsmrt 472
                  +dl+vig gsggl +   aa  + k+vav d  k         lggtcvnvgc+pkklm t a   + ++++  +gwe+ ae  + +w +++   ++ +  +n  y   + + + +++   + ++ d ++v      d k k    + a+ i++atg  p++ +i+g  e+ci+s++ f    +p ++l+vg  y+++e ag +   k vg + ++  r+ + lrgfd+++ k++   ++  gi       p+ ve+   g k+v++     s ++ ++d v+laigr   ++ + ldk+gv l+ +g + v    +tnv+ iyaigd+ d            ltpvai+ g  + d ++a    + d+t v ++v++       gl+ee+a k+y  e+v v++s f pl   +     +   +k++ d  +   v+g+h+ g s+ e+ q  a+++k +a  + f +t+g+hpt  ee+  + t
  MMETSP1137-20121227|8175_1  41 HFDLLVIGGGSGGLACSKRAA-QHGKKVAVCDFVKPTPIGTTWKLGGTCVNVGCIPKKLMHTAALLGEGMKDAVSYGWEMPAEPTH-KWETMVENVQQHIFSLNFGYRSDLME-NSVKYLNAYATFLDPHTVRT---VDKKGKEV-DVTADTIVIATGGRPNYPDIPGArEHCITSDDIFSQRTPPGKTLVVGASYVALECAGFI---KGVGFDTTVMMRSIP-LRGFDQQMAKQVQTYMMEHGIPFIEGAVPTAVELLDSGKKKVTWSlkdgSSASDEFDTVLLAIGRKVCTSDIGLDKAGVSLSPNGKVPVA-SERTNVPHIYAIGDIIDgdslsppsnTTELTPVAIQAGRLLADRLYAGATLEMDYTGVPTTVYTPLEYACIGLAEEDAIKTYgeERVEVFHSYFKPLEWTLPHRGDNACYCKLICDLQEnLRVIGLHVCGPSAGEMAQGFAVAMKCGATKAHFDQTVGIHPTVVEEFTILST 515
                 59************8887766.69999******99998889999**************************************9865.7*******************987765.578999********999854...55555543.467899***************9549********************************85...899***999999755.9*****************************************9853333667778********************************996.58************9863333332224679*********************************99999999***********7779************999999999999999999765168********************************************987776 PP

>> TIGR02053  MerA: mercuric reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  239.3   0.0   1.4e-73   1.9e-71       1     446 [.      42     510 ..      42     518 .. 0.90

  Alignments for each domain:
  == domain 1    score: 239.3 bits;  conditional E-value: 1.4e-73
   TIGR02053   1 ydlviiGsGaaafaaaikaaelgakvvlve......rGi...lGGtCvnvGCvPSKallraaevaklakkas.vgl.laaevevdleelleqkkevveelRkeKYedvlesydavdllegkakfkdektvkvdl..gkev.vgakrvliAtGarpavPeipGLkeaeyltseelleldkipeslvviGggaiavElaqlfarlGsevtllqrserllkeeepeisaaveellaeeGvevvksakvkavskrnggkklvtveknd.skkeveadellvAtGRkpnvdgLnLekvgvklderGeilvdeklrtsnpkiyAAGDvikglq.........lesvAakeGvvaAenalggaeakldlevlPkvvFtdPevAsvGlteeelakagievesrtvkleavpralin...retrGliKlvae.ketkkvlgvqvvaeeAaevineaalaikagltvddlidtlhvfltmaEgl 446
                 +dl++iG+G++++a   +aa+ g+kv++ +       G+   lGGtCvnvGC+P K + +aa + + +k+a  +g  + ae++ + e+++e+ ++ +  l      d++e+   v++l+++a+f d++tv+  +  gkev v+a+ ++iAtG rp+ P+ipG +e + +ts++++++ + p + +v+G++++a+E a  ++ +G ++t++ rs + l   ++++++ v+ ++ e G+ +++ a  +av+  + gkk+vt   +d s+++ e d++l+A GRk  +  ++L+k+gv l+ +G++ v ++ rt+ p+iyA GD+i+g +         l  vA ++G + A+    ga  ++d++ +P+ v+t  e+A +Gl ee+++k   e ++ + +    p ++++   +++    Kl+ + +e  +v+g +v +++A+e+ + +a+a+k g+t     +t+ +++t++E  
  MMETSP1137-20121227|8175_1  42 FDLLVIGGGSGGLACSKRAAQHGKKVAVCDfvkptpIGTtwkLGGTCVNVGCIPKKLMHTAALLGEGMKDAVsYGWeMPAEPTHKWETMVENVQQHIFSLNFGYRSDLMENS--VKYLNAYATFLDPHTVRTVDkkGKEVdVTADTIVIATGGRPNYPDIPGARE-HCITSDDIFSQRTPPGKTLVVGASYVALECAGFIKGVGFDTTVMMRS-IPLRGFDQQMAKQVQTYMMEHGIPFIEGAVPTAVELLDSGKKKVTWSLKDgSSASDEFDTVLLAIGRKVCTSDIGLDKAGVSLSPNGKVPVASE-RTNVPHIYAIGDIIDGDSlsppsntteLTPVAIQAGRLLADRLYAGATLEMDYTGVPTTVYTPLEYACIGLAEEDAIKTYGEERVEVFHSYFKPLEWTLphrGDNACYCKLICDlQENLRVIGLHVCGPSAGEMAQGFAVAMKCGATKAHFDQTVGIHPTVVEEF 510
                 599**********************9986533233323233389**********************999998555415578899999************9887777777766..9***************865547888735677899**************988.589********************************************.799******************************************987651667899**********************************876.8999**********9965568889999************************************************************999999999985333688899*****966789******************************************9975 PP

>> TIGR03452  mycothione_red: mycothione reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  165.3   0.0   3.5e-51   4.7e-49       2     443 ..      41     508 ..      40     513 .. 0.82

  Alignments for each domain:
  == domain 1    score: 165.3 bits;  conditional E-value: 3.5e-51
   TIGR03452   2 hydliiiGtGsGnsilderfe..dkriaive.........kGtfGGtclnvGciptkmfvyaaevakevkesarlgidaeid.svrwpdivsrvfedridpiaasGeeyrrgdktpnidvyesharfvgrktlrted..gee..itadqvviaaGsrpvipeaiaesgvryytnedimrlpelpeslvivGgGyialefahvfsalGtkvtlvarsekllrkldediserftelakkk.fdvrlg...rnvtaaeqdddgvtlelddGstvea..dvllvatGrvpngdlldaeaaGvevdedgrvkvdeyqrtsaegvfalGdv.........sspyqlkhvanaearvvkhnllkdedlkkadhdfvpaavftdpqiatvGlteqeareaGlditvkvqdygdvayGwam...edteglakliad.kdtGkllGahiiGaqassliqqlitalafgldarelarkqywihpalpe 443
                 h+dl++iG GsG    ++r +   k++a+++           ++GGtc+nvGcip k+   aa + + +k++  +g +   + + +w+ +v+ v +  i  +      yr       ++  ++ a+f +++t+rt d  g+e  +tad++via+G+rp  p++   +  +  t++di      p + ++vG+ y+ale a   +++G + t+++rs   lr  d+++++++++   ++ +    g   ++v   ++ +++vt +l dGs+++   d++l+a+Gr   +  + +++aGv ++ +g+v v   +rt +  ++a+Gd+         s+  +l  va +  r +++ l   + l ++d++ vp++v+t    a++Gl+e++a ++  + +v v +       w++    d+  ++kli+d ++  +++G h+ G+ a  + q +  a+  g + +++ +    ihp++ e
  MMETSP1137-20121227|8175_1  41 HFDLLVIGGGSGGLACSKRAAqhGKKVAVCDfvkptpigtTWKLGGTCVNVGCIPKKLMHTAALLGEGMKDAVSYGWEMPAEpTHKWETMVENVQQ-HIFSLN---FGYRSDLMENSVKYLNAYATFLDPHTVRTVDkkGKEvdVTADTIVIATGGRPNYPDI-PGAREHCITSDDIFSQRTPPGKTLVVGASYVALECAGFIKGVGFDTTVMMRSI-PLRGFDQQMAKQVQTYMMEHgIPFIEGavpTAVELLDSGKKKVTWSLKDGSSASDefDTVLLAIGRKVCTSDIGLDKAGVSLSPNGKVPVAS-ERTNVPHIYAIGDIidgdslsppSNTTELTPVAIQAGRLLADRLYAGATL-EMDYTGVPTTVYTPLEYACIGLAEEDAIKTYGEERVEVFHSYFKPLEWTLphrGDNACYCKLICDlQENLRVIGLHVCGPSAGEMAQGFAVAMKCGATKAHFDQ-TVGIHPTVVE 508
                 9***********9888877641169****984443332223368********************************9988873568********99.555554...45999988889999*************995411555789**************9985.56688999*******************************************98.6899****9999877655442444444000444444555566*********99763379*******************************75.9************9444444333445667777777777777777776666.69*************************9998888888877667788998744459999*******556789*************************99888754.5679998765 PP

>> TIGR03385  CoA_CoA_reduc: CoA-disulfide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.0   0.0      0.45        60       2      26 ..      44      68 ..      43      76 .. 0.78
   2 !   66.4   0.0   3.2e-21   4.2e-19      95     412 ..     174     491 ..     164     508 .. 0.73

  Alignments for each domain:
  == domain 1    score: 0.0 bits;  conditional E-value: 0.45
   TIGR03385  2 ivivGgvaaGasaAsrvrRLkkesd 26
                ++++Gg+++G ++  r+    k++ 
  MMETSP1137-20121227|8175_1 44 LLVIGGGSGGLACSKRAAQHGKKVA 68
                5799******999988776666555 PP

  == domain 2    score: 66.4 bits;  conditional E-value: 3.2e-21
   TIGR03385  95 ktnekyeesyDkLilstGAkpkileiegieldavftlrnledaeaikkyldkkkvekvvviGgGyiglemvealkergkevtliersekilnkllDeeiakiveeelekkeielr...lneevksve.geekve.vltsgkv..yqaDlvilavGvk...PnselikssqlklgkkGaikvnekfqtsveniyaiGDvaesknivtkkeelvPlAwaanklgsivaeni.aGk..diefkGvlGtsivkfldltiaktGltenelkklnidyktvevkak.ak....anYYPgakdlllklive.kdtkkilgaqavGkegvlkRidvlaaaikakl 412
                 k++++ + + D+++++tG +p+ ++i+g    + + +     ++ i  + +++   k +v+G+ y++le +  +k  g + t++ rs  +  + +D+++ak v+  + +++i +    +   v+ ++ g++kv   l++g+    ++D v+la+G k    ++ l +++++ l  +G ++v    +t+v++iyaiGD+++   +     ++  l ++a ++g+++a+++ aG   ++    + G   +    l+ a +Gl e+++ k  +  + vev +   k    +  + g++  + kli + +++ +++g  + G   + +  +  a+a+k ++
  MMETSP1137-20121227|8175_1 174 KKGKEVDVTADTIVIATGGRPNYPDIPG---AREHCI----TSDDI--FSQRTPPGKTLVVGASYVALECAGFIKGVGFDTTVMMRSIPL--RGFDQQMAKQVQTYMMEHGIPFIegaVPTAVELLDsGKKKVTwSLKDGSSasDEFDTVLLAIGRKvctSDIGL-DKAGVSLSPNGKVPVAS-ERTNVPHIYAIGDIIDGDSLS-PPSNTTELTPVAIQAGRLLADRLyAGAtlEMD---YTGVPTTVYTPLEYACIGLAEEDAIK-TYGEERVEVFHSyFKplewTLPHRGDNACYCKLICDlQENLRVIGLHVCGPS-AGEMAQGFAVAMKCGA 491
                 4456667789******************...444433....34444..5577899****************************9999888..99*****************9885111445555554478888899***98622589********8732134444.556************86.59*************987665.44555678888888999****99456533444...55666666778999********9995.4555555554431331100233446677777777774456677777777765.4555555555555555 PP

>> TIGR02374  nitri_red_nirB: nitrite reductase [NAD(P)H], large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.5   0.0   3.1e-15     4e-13      83     279 ..     167     360 ..     142     370 .. 0.76

  Alignments for each domain:
  == domain 1    score: 46.5 bits;  conditional E-value: 3.1e-15
   TIGR02374  83 eeksvitdagrt..lsyDkLilatGsypfilPipGaDkkgvfvyrtieDldaleaaakrtkkaaviGgGLLGLeaaraLknlGldvsvielapllmakqlDqtagrlLqrelekkGltvllek..etveivkesvekaerlrfkDGssl..eadlvvlaaGirPrd.eLa.aeaGlkvndrrGiivndsmqtsdPdiyavGecae 279
                 ++   + ++g+   ++ D++++atG  p  + ipGa ++ +++    +D   + +      k+ v+G+  + Le a  +k +G+d+ v+  +  +  + +Dq  ++++q+ + ++G+ +  +    +ve   +s++k+ +  +kDGss   e d v+la+G +  + +++  +aG+++++ + + v  s +t+ P+iya+G++ +
  MMETSP1137-20121227|8175_1 167 HTVRTVDKKGKEvdVTADTIVIATGGRPNYPDIPGAREHCITS----DD---IFSQRTPPGKTLVVGASYVALECAGFIKGVGFDTTVM--MRSIPLRGFDQQMAKQVQTYMMEHGIPFIEGAvpTAVELL-DSGKKKVTWSLKDGSSAsdEFDTVLLAIGRKVCTsDIGlDKAGVSLSPNGKVPV-ASERTNVPHIYAIGDIID 360
                 443333333333114679*****************98776543....44...555555567789***********************95..66777899********************985411445554.556999999*****987446899******886431555258******7666655.689***********9865 PP

>> TIGR01292  TRX_reduct: thioredoxin-disulfide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.0      0.32        43       2      29 ..      43      70 ..      42      81 .. 0.80
   2 !   32.4   0.0   6.4e-11   8.5e-09      82     276 ..     172     360 ..     129     363 .. 0.78

  Alignments for each domain:
  == domain 1    score: 0.6 bits;  conditional E-value: 0.32
   TIGR01292  2 dviiiGaGpaGltaaiYaaranlktlli 29
                d+++iG+G +Gl+ +  aa+ + k+++ 
  MMETSP1137-20121227|8175_1 43 DLLVIGGGSGGLACSKRAAQHGKKVAVC 70
                899*********9988888877776665 PP

  == domain 2    score: 32.4 bits;  conditional E-value: 6.4e-11
   TIGR01292  82 vdkkerpfkvltedekeykakaviiAtGakarklgikgeeeflgrGvsyCavCDgalfknk...evavvGggdsAveealyLskiakkVtlvhrrdklra.ekillerlkkne...kievllnstveeikGdekvesvkikntktkeeeelkvdgvFiaiGhepntell.kel..leldeegyivvdeemrTsveGvfaaGDvrd 276
                 vdkk        ++e  ++a++++iAtG ++ + +i+g  e        C + D  + +     + +vvG    A+e a +++ ++ + t++ r   lr  ++ ++++++       i ++  ++ ++++  ++ ++ +  + k++++ + + d+v +aiG +  t  +  ++  ++l+ +g + v +  rT+v+ ++a GD+ d
  MMETSP1137-20121227|8175_1 172 VDKK--------GKEVDVTADTIVIATGGRPNYPDIPGAREH-------CITSDDIFSQRTppgKTLVVGASYVALECAGFIKGVGFDTTVMMRSIPLRGfDQQMAKQVQTYMmehGIPFIEGAVPTAVELLDSGKKKVTWSLKDGSSASDEFDTVLLAIGRKVCTSDIgLDKagVSLSPNGKVPVAS-ERTNVPHIYAIGDIID 360
                 3332........2456789******************99985.......999998776654555789****************************9999745666666655333349*******999998776544444556999****************98877543133348**********987.59***********976 PP

>> TIGR01316  gltA: glutamate synthase (NADPH), homotetrameric
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.5   0.0   0.00031     0.041     130     164 ..      38      72 ..      25      82 .. 0.84
   2 ?    1.4   0.0      0.17        23     362     388 ..     169     195 ..     160     209 .. 0.86
   3 !   16.7   0.2     4e-06   0.00053     356     428 ..     287     362 ..     213     365 .. 0.69

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 0.00031
   TIGR01316 130 pstkkkvaviGaGpaGlavaselakkGhevtvfea 164
                  + ++ + viG G  Gla+++  a++G +v v + 
  MMETSP1137-20121227|8175_1  38 MPDHFDLLVIGGGSGGLACSKRAAQHGKKVAVCDF 72 
                 56788999***********************9874 PP

  == domain 2    score: 1.4 bits;  conditional E-value: 0.17
   TIGR01316 362 krkvpvtdeevkleadavivaiGqean 388
                  r+v   ++ev + ad++++a G ++n
  MMETSP1137-20121227|8175_1 169 VRTVDKKGKEVDVTADTIVIATGGRPN 195
                 57778889999************9998 PP

  == domain 3    score: 16.7 bits;  conditional E-value: 4e-06
   TIGR01316 356 erdsgekrkv.pv.tdeevkleadavivaiGqe..ankiiaedsslktskrGtivvdedletsieGvfaGGdvirGe 428
                   dsg+k+       ++ +  e d+v++aiG++  +  i  +++++  s++G + v    +t+++ ++a Gd+i G+
  MMETSP1137-20121227|8175_1 287 LLDSGKKKVTwSLkDGSSASDEFDTVLLAIGRKvcTSDIGLDKAGVSLSPNGKVPVAS-ERTNVPHIYAIGDIIDGD 362
                 34555444331321446667799********98435789999*************985.58**************97 PP

>> TIGR04018  Bthiol_YpdA: putative bacillithiol system oxidoreductase, YpdA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   0.1     0.014       1.8       1      28 [.      43      70 ..      43      74 .. 0.89
   2 !   19.1   0.0   7.4e-07   9.8e-05     108     291 ..     177     361 ..     152     366 .. 0.76

  Alignments for each domain:
  == domain 1    score: 5.1 bits;  conditional E-value: 0.014
   TIGR04018  1 dviiiGaGPiGlaaaieakkaglsylii 28
                d+++iG+G  Gla++  a ++g ++ + 
  MMETSP1137-20121227|8175_1 43 DLLVIGGGSGGLACSKRAAQHGKKVAVC 70
                789*************999999888775 PP

  == domain 2    score: 19.1 bits;  conditional E-value: 7.4e-07
   TIGR04018 108 ekeeyeakkvvvatGyydipnllnvpGedlpkvsh..yykeahpyvkqkvvvvGgknsavdaalelyrkgaevtlvvrgeels...ekvkyWvkp.dlenrikegkikalfesevkeieeesvtletpegeveeiendfvlaltGyrpdle..lleklgveleedekipvydeetmEtnveglylaGvvaag 291
                 ++ +++a ++v+atG  ++pn+ ++pG   + ++    +++       k +vvG++  a + a  ++  g + t+++r   l+   +++   v+   +e  i   + ++    e+ +  +++vt + ++g++ + e d vl+ +G +  ++   l+k+gv+l+ + k+pv +e+   tnv+ +y  G +  g
  MMETSP1137-20121227|8175_1 177 KEVDVTADTIVIATG--GRPNYPDIPGAREHCITSddIFSQRT--PPGKTLVVGASYVALECAGFIKGVGFDTTVMMRSIPLRgfdQQMAKQVQTyMMEHGIPFIEGAVPTAVELLDSGKKKVTWSLKDGSSASDEFDTVLLAIGRKVCTSdiGLDKAGVSLSPNGKVPVASER---TNVPHIYAIGDIIDG 361
                 566899*********..89********9988887511454444..46789***************************986554111333333333023444444444444555666777999***********************9864432148***************9998...9*********99877 PP

>> TIGR03997  mycofact_OYE_2: mycofactocin system FadH/OYE family oxidoreductase 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.5   0.0   0.00022      0.03     382     409 ..      44      71 ..      32      86 .. 0.90
   2 !   13.3   0.0   3.3e-05    0.0044     463     508 ..     182     226 ..     168     322 .. 0.75

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 0.00022
   TIGR03997 382 vlvvGgGPaGleaaataarrGhrvtlle 409
                 +lv+GgG +Gl+ ++ aa+ G +v +++
  MMETSP1137-20121227|8175_1  44 LLVIGGGSGGLACSKRAAQHGKKVAVCD 71 
                 79**********************9986 PP

  == domain 2    score: 13.3 bits;  conditional E-value: 3.3e-05
   TIGR03997 463 kPDavvlatGsrparpdlagadservvtvrevltgeaevggrvlvv 508
                 + D++v+atG rp+ pd++g + e+ +t  ++ ++++ +g++++v 
  MMETSP1137-20121227|8175_1 182 TADTIVIATGGRPNYPDIPG-AREHCITSDDIFSQRTPPGKTLVVG 226
                 569*****************.889999********99999998874 PP

>> TIGR03169  Nterm_to_SelD: pyridine nucleotide-disulfide oxidoreductase family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.0      0.21        28     136     159 ..      32      55 ..      20      73 .. 0.72
   2 !   19.3   0.0   8.3e-07   0.00011     130     282 ..     204     360 ..     150     408 .. 0.83

  Alignments for each domain:
  == domain 1    score: 1.5 bits;  conditional E-value: 0.21
   TIGR03169 136 lekakaseetkslavvGgGaagvE 159
                 ++++++ ++  +l+v+GgG +g+ 
  MMETSP1137-20121227|8175_1  32 QAAQDNMPDHFDLLVIGGGSGGLA 55 
                 445556666779*********964 PP

  == domain 2    score: 19.3 bits;  conditional E-value: 8.3e-07
   TIGR03169 130 aaweellekakaseetkslavvGgGaagvElalalrkrlkkrglkaevslaseakllqalsakvrklvkrllakrgievlekeevtevede.........alllaegetleadavllatgak...apawLaesglsldedGflavkktLqslshpevFaaGDcav 282
                 +++ ++ +  ++++ + + +vvG+   ++E a+ ++    ++ +        ++  l+++ +++ k+v+  ++++gi  +e +  t ve           +l+ ++  + e+d+vlla+g k   +   L + g+sl ++G + v ++   ++ p+++a GD++ 
  MMETSP1137-20121227|8175_1 204 EHCITSDDIFSQRTPPGKTLVVGASYVALECAGFIKGVGFDTTVM------MRSIPLRGFDQQMAKQVQTYMMEHGIPFIEGAVPTAVELLdsgkkkvtwSLKDGSSASDEFDTVLLAIGRKvctSDIGLDKAGVSLSPNGKVPVASE--RTNVPHIYAIGDIID 360
                 556666677777777788999999999999888776655544433......67889*************************998888874355789887777778888889*********872224556****************876..4589********985 PP

>> TIGR01372  soxA: sarcosine oxidase, alpha subunit family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.7   0.0   5.9e-08   7.8e-06     161     198 ..      34      71 ..      22      84 .. 0.91

  Alignments for each domain:
  == domain 1    score: 21.7 bits;  conditional E-value: 5.9e-08
   TIGR01372 161 tydkvnahcDvLvvGaGpaGLaaAraAaraGarvilvd 198
                 + d++  h D+Lv+G+G+ GLa  + Aa++G +v ++d
  MMETSP1137-20121227|8175_1  34 AQDNMPDHFDLLVIGGGSGGLACSKRAAQHGKKVAVCD 71 
                 5688999******************************9 PP

>> TIGR01317  GOGAT_sm_gam: glutamate synthase, NADH/NADPH, small subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   0.0     0.022       2.9     146     172 ..      44      70 ..      21      80 .. 0.80
   2 !   14.3   0.0   2.2e-05    0.0029     388     459 ..     294     364 ..     279     368 .. 0.78

  Alignments for each domain:
  == domain 1    score: 4.4 bits;  conditional E-value: 0.022
   TIGR01317 146 vavvGsGPaGlaaadqlnraGhtvtvf 172
                 + v+G G  Gla++++ ++ G++v+v 
  MMETSP1137-20121227|8175_1  44 LLVIGGGSGGLACSKRAAQHGKKVAVC 70 
                 458888888888888888888888874 PP

  == domain 2    score: 14.3 bits;  conditional E-value: 2.2e-05
   TIGR01317 388 kyeleevpgseevleadlvllalGfvg.peqallddlgvdkdergnikaeldesetsidGvfaaGdarrGqsl 459
                 k +    +gs    e d vlla+G +  +  + ld+ gv  + +g++  +   ++t+++ ++a Gd+  G sl
  MMETSP1137-20121227|8175_1 294 KVTWSLKDGSSASDEFDTVLLAIGRKVcTSDIGLDKAGVSLSPNGKVPVAS--ERTNVPHIYAIGDIIDGDSL 364
                 4444445688899999********8651556689*************6555..558**************998 PP

>> TIGR03315  Se_ygfK: putative selenate reductase, YgfK subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.0     0.083        11     536     568 ..      40      72 ..      18      85 .. 0.79
   2 !   13.7   0.0   1.3e-05    0.0017     758     819 ..     302     363 ..     221     398 .. 0.84

  Alignments for each domain:
  == domain 1    score: 1.0 bits;  conditional E-value: 0.083
   TIGR03315 536 ekhkvaviGaGPaGlsagyflaraGlpvtvfek 568
                 ++  + viG+G  Gl+ +   a++G +v+v + 
  MMETSP1137-20121227|8175_1  40 DHFDLLVIGGGSGGLACSKRAAQHGKKVAVCDF 72 
                 555788***********************9884 PP

  == domain 2    score: 13.7 bits;  conditional E-value: 1.3e-05
   TIGR03315 758 gelveleadaviaavGeqvdte.l.lkklgieldekgkvvvneetketsvtnvfviGdakkGPa 819
                 g     e d+v++a+G++v t  + l+k g++l  +gkv v +e   t+v++++ iGd+  G +
  MMETSP1137-20121227|8175_1 302 GSSASDEFDTVLLAIGRKVCTSdIgLDKAGVSLSPNGKVPVASE--RTNVPHIYAIGDIIDGDS 363
                 55555678**********966423589*************9999..9***********998864 PP

>> TIGR00275  TIGR00275: flavoprotein, HI0933 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.1   2.9e-05    0.0039       2      28 ..      45      71 ..      44      80 .. 0.93
   2 ?    1.4   0.0      0.19        25     144     160 ..     177     193 ..     158     209 .. 0.78

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 2.9e-05
   TIGR00275  2 iiiGgGaaGlmaAitaaeegakVlllE 28
                ++iGgG  Gl ++ +aa++g+kV++ +
  MMETSP1137-20121227|8175_1 45 LVIGGGSGGLACSKRAAQHGKKVAVCD 71
                7***********************987 PP

  == domain 2    score: 1.4 bits;  conditional E-value: 0.19
   TIGR00275 144 ekkeleakkvilatGgk 160
                 ++ +++a+++++atGg 
  MMETSP1137-20121227|8175_1 177 KEVDVTADTIVIATGGR 193
                 4557899*********5 PP

>> TIGR01318  gltD_gamma_fam: glutamate synthase, small subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.6   0.0     0.002      0.26     144     172 ..      44      72 ..      34     100 .. 0.85
   2 ?   -0.5   0.0      0.57        75     376     401 ..     172     197 ..     152     217 .. 0.78
   3 ?   -1.5   0.0       1.2   1.6e+02     143     173 ..     221     251 ..     208     259 .. 0.83
   4 !    5.4   0.0    0.0095       1.3     379     446 ..     301     364 ..     280     387 .. 0.85

  Alignments for each domain:
  == domain 1    score: 7.6 bits;  conditional E-value: 0.002
   TIGR01318 144 vaviGaGpaGlacadvlaraGvkvvvfdr 172
                 + viG+G  Glac+ + a+ G kv v d 
  MMETSP1137-20121227|8175_1  44 LLVIGGGSGGLACSKRAAQHGKKVAVCDF 72 
                 569**********************9884 PP

  == domain 2    score: -0.5 bits;  conditional E-value: 0.57
   TIGR01318 376 eivaGseavleadvviiafGfepham 401
                 +  +G e  + ad+++ia G +p+ +
  MMETSP1137-20121227|8175_1 172 VDKKGKEVDVTADTIVIATGGRPNYP 197
                 445899**************999764 PP

  == domain 3    score: -1.5 bits;  conditional E-value: 1.2
   TIGR01318 143 rvaviGaGpaGlacadvlaraGvkvvvfdry 173
                 +  v+Ga    l ca  ++  G +++v  r 
  MMETSP1137-20121227|8175_1 221 KTLVVGASYVALECAGFIKGVGFDTTVMMRS 251
                 5679***************999999998775 PP

  == domain 4    score: 5.4 bits;  conditional E-value: 0.0095
   TIGR01318 379 aGseavleadvviiafGfephamew.laehgikldskGrivaaeeselayqtsnpkifaGGdivrGadl 446
                 +Gs a  e d+v++a G +  + +  l++ g+ l+ +G++ +a     + +t+ p+i+a Gdi+ G  l
  MMETSP1137-20121227|8175_1 301 DGSSASDEFDTVLLAIGRKVCTSDIgLDKAGVSLSPNGKVPVA-----SERTNVPHIYAIGDIIDGDSL 364
                 688888899********998877644999**********9998.....568999**********99766 PP

>> TIGR03378  glycerol3P_GlpB: glycerol-3-phosphate dehydrogenase, anaerobic, B subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.2     1e-05    0.0013       1      29 [.      42      70 ..      42      72 .. 0.96
   2 ?   -2.2   0.0       2.6   3.4e+02     299     319 ..     171     191 ..     159     192 .. 0.78

  Alignments for each domain:
  == domain 1    score: 15.6 bits;  conditional E-value: 1e-05
   TIGR03378  1 fDviiiGgGlaGlscalrlaeaGkktaii 29
                fD ++iGgG  Gl+c+ r+a++Gkk+a+ 
  MMETSP1137-20121227|8175_1 42 FDLLVIGGGSGGLACSKRAAQHGKKVAVC 70
                9*************************985 PP

  == domain 2    score: -2.2 bits;  conditional E-value: 2.6
   TIGR03378 299 iftrnhedipleakqfvlasG 319
                    ++ +++ ++a+++v+a+G
  MMETSP1137-20121227|8175_1 171 TVDKKGKEVDVTADTIVIATG 191
                 4567889999*********99 PP

>> TIGR01816  sdhA_forward: succinate dehydrogenase, flavoprotein subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.1   1.8e-05    0.0024       2      55 ..      41      94 ..      40      99 .. 0.94

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 1.8e-05
   TIGR01816  2 kfdvvvvGaGGaGlraalelakeglktavvtklfPtrshtvaaqGGisaalgnv 55
                +fd +v+G+G  Gl ++ ++a++g k+av   + Pt   t+   GG ++ +g +
  MMETSP1137-20121227|8175_1 41 HFDLLVIGGGSGGLACSKRAAQHGKKVAVCDFVKPTPIGTTWKLGGTCVNVGCI 94
                69********************************************99998876 PP

>> TIGR03143  AhpF_homolog: putative alkyl hydroperoxide reductase F subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.0     0.058       7.6       4      24 ..      41      61 ..      38      74 .. 0.78
   2 !    9.2   0.0   0.00066     0.088      75     190 ..     154     267 ..     141     362 .. 0.63

  Alignments for each domain:
  == domain 1    score: 2.8 bits;  conditional E-value: 0.058
   TIGR03143  4 lydlvviGgGpaglsaGiyag 24
                 +dl+viGgG+ gl+    a+
  MMETSP1137-20121227|8175_1 41 HFDLLVIGGGSGGLACSKRAA 61
                58************9876555 PP

  == domain 2    score: 9.2 bits;  conditional E-value: 0.00066
   TIGR03143  75 vkflqaevldvdlegdiktv..ktakgdlkalavliatGasprklGfeGeeeftGrGvaycatcdGefftGl...dvlviGgGfaaaeeavfltkyakkvtvivrepdf.tcakaiaekvka 190
                 vk+l+a ++ +d  ++++tv  k ++ d+ a +++iatG  p     +G +e+       c t d  f +     + lv+G+ + a e a f+   +   tv++r   +   ++ +a++v++
  MMETSP1137-20121227|8175_1 154 VKYLNAYATFLDP-HTVRTVdkKGKEVDVTADTIVIATGGRPNYPDIPGAREH-------CITSDDIFSQRTppgKTLVVGASYVALECAGFIKGVGFDTTVMMRSIPLrGFDQQMAKQVQT 267
                 6667776666664.4667773245677888999****************9995.......9****9998854333689**************************985441456777776664 PP

>> TIGR03140  AhpF: alkyl hydroperoxide reductase, F subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.6   0.0   0.00046     0.061     203     240 ..      32      69 ..       3      73 .. 0.80
   2 ?    2.3   0.0     0.076        10     438     486 ..     308     358 ..     129     362 .. 0.66

  Alignments for each domain:
  == domain 1    score: 9.6 bits;  conditional E-value: 0.00046
   TIGR03140 203 aeeaeeekekydvlvvGgGPagaaaaiyaarkGlkval 240
                 ++++++  +++d+lv+GgG  g a +  aa+ G kva+
  MMETSP1137-20121227|8175_1  32 QAAQDNMPDHFDLLVIGGGSGGLACSKRAAQHGKKVAV 69 
                 566778889************************99997 PP

  == domain 2    score: 2.3 bits;  conditional E-value: 0.076
   TIGR03140 438 eldGvfvqiGlvpnte.f.lkda.velnrrGeividergrtsvkGifaaGdv 486
                 e+d v++ iG    t+ + l++a v l+  G + + +  rt+v+ i+a Gd+
  MMETSP1137-20121227|8175_1 308 EFDTVLLAIGRKVCTSdIgLDKAgVSLSPNGKVPVAS-ERTNVPHIYAIGDI 358
                 4555666666433332121222237888888888754.58999999999997 PP

>> TIGR03467  HpnE: squalene-associated FAD-dependent desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.6   0.1    0.0001     0.013       2      28 ..      45      71 ..      44      76 .. 0.93
   2 ?   -2.2   0.0       3.1   4.1e+02     227     264 ..     281     319 ..     251     323 .. 0.75

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 0.0001
   TIGR03467  2 vvvGgGlAGLaAAveLaraGvrvtllE 28
                +v+GgG  GLa+  + a++G +v + +
  MMETSP1137-20121227|8175_1 45 LVIGGGSGGLACSKRAAQHGKKVAVCD 71
                79*********************9976 PP

  == domain 2    score: -2.2 bits;  conditional E-value: 3.1
   TIGR03467 227 lgtrvreleasaggiralveaaeet..laadavvlAvppe 264
                 + t+v+ l   +++++++++ ++++   ++d v lA+  +
  MMETSP1137-20121227|8175_1 281 VPTAVELLDSGKKKVTWSLK-DGSSasDEFDTVLLAIGRK 319
                 55789999999999999998.3333356899999998765 PP

>> TIGR03364  HpnW_proposed: FAD dependent oxidoreductase TIGR03364
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   0.0   6.5e-05    0.0085       2      57 ..      43      99 ..      42     107 .. 0.83

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 6.5e-05
   TIGR03364  2 dvvvvGaGivGlahAlaaarrGlkVtvie.rssraaGAsvrNFGqvvvtgqaageal 57
                d++v+G+G  Gla + +aa++G+kV+v +  ++++ G + +  G +v  g  + +++
  MMETSP1137-20121227|8175_1 43 DLLVIGGGSGGLACSKRAAQHGKKVAVCDfVKPTPIGTTWKLGGTCVNVGCIPKKLM 99
                89**************************94477899998888888887776665555 PP

>> TIGR02032  GG-red-SF: geranylgeranyl reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.9   0.1    0.0035      0.47       1      30 [.      42      71 ..      42      75 .. 0.94
   2 ?    2.4   0.0      0.17        23     119     148 ..     163     193 ..     149     204 .. 0.74
   3 ?   -1.9   0.0       3.5   4.6e+02      93     131 ..     257     302 ..     231     319 .. 0.62

  Alignments for each domain:
  == domain 1    score: 7.9 bits;  conditional E-value: 0.0035
   TIGR02032  1 yDvvvvGaGpaGssaAlrlakkGlrVllle 30
                +D++v+G+G  G +   r+a+ G +V++ +
  MMETSP1137-20121227|8175_1 42 FDLLVIGGGSGGLACSKRAAQHGKKVAVCD 71
                7*************************9876 PP

  == domain 2    score: 2.4 bits;  conditional E-value: 0.17
   TIGR02032 119 iedekvkvevred.ekkevtakivigAdGak 148
                 + d +++ +v+++ ++++vta+ +++A+G +
  MMETSP1137-20121227|8175_1 163 FLDPHTVRTVDKKgKEVDVTADTIVIATGGR 193
                 4454445555554589************965 PP

  == domain 3    score: -1.9 bits;  conditional E-value: 3.5
   TIGR02032  93 fDelLaekAq....eagaelllettvlsveied...ekvkvevred 131
                 fD+++a+++q    e+g+ + +++  ++ve  d   +kv+++++++
  MMETSP1137-20121227|8175_1 257 FDQQMAKQVQtymmEHGIPFIEGAVPTAVELLDsgkKKVTWSLKDG 302
                 5555555554222266666666666666666666556666666555 PP

>> TIGR00292  TIGR00292: thiazole biosynthesis enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.7   0.0   0.00018     0.024      22      65 ..      42      87 ..      31      98 .. 0.77
   2 ?   -2.1   0.0         3   3.9e+02      25      56 ..     223     254 ..     221     259 .. 0.87

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 0.00018
   TIGR00292 22 sDviivGaGpsGLtaayylakeglkvvvle.rklaiGGGsw.gGGm 65
                 D +++G+G+ GL++++  a++g kv+v +  k ++ G +w +GG 
  MMETSP1137-20121227|8175_1 42 FDLLVIGGGSGGLACSKRAAQHGKKVAVCDfVKPTPIGTTWkLGGT 87
                5999*******************99999773233444444425665 PP

  == domain 2    score: -2.1 bits;  conditional E-value: 3
   TIGR00292  25 iivGaGpsGLtaayylakeglkvvvlerklai 56 
                 ++vGa    L +a ++   g+ + v+ r++ +
  MMETSP1137-20121227|8175_1 223 LVVGASYVALECAGFIKGVGFDTTVMMRSIPL 254
                 68999999********9999999999998865 PP

>> TIGR02734  crtI_fam: phytoene desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.1   0.00019     0.025       2      28 ..      45      71 ..      44     115 .. 0.86

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 0.00019
   TIGR02734  2 vViGaGlgGLAlAirLaaaGievtvle 28
                +ViG+G gGLA++ r a++G +v v +
  MMETSP1137-20121227|8175_1 45 LVIGGGSGGLACSKRAAQHGKKVAVCD 71
                6**********************9976 PP

>> TIGR01790  carotene-cycl: lycopene cyclase family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   0.00016     0.022       1      41 [.      43      83 ..      43     198 .. 0.88

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 0.00016
   TIGR01790  1 DliviGgGlAglaiAlelakpglrvqlieaapklpfnntyg 41
                Dl+viGgG  gla + + a+ g +v + + +++ p   t+ 
  MMETSP1137-20121227|8175_1 43 DLLVIGGGSGGLACSKRAAQHGKKVAVCDFVKPTPIGTTWK 83
                9****************************999999999985 PP

>> TIGR01812  sdhA_frdA_Gneg: succinate dehydrogenase or fumarate reductase, flavoprotein subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   0.0    0.0009      0.12       1      48 [.      43      90 ..      43      99 .. 0.90
   2 ?   -1.3   0.0      0.93   1.2e+02     171     190 ..     174     193 ..     169     196 .. 0.86

  Alignments for each domain:
  == domain 1    score: 8.6 bits;  conditional E-value: 0.0009
   TIGR01812  1 DvvivGaGlAGlraAveaakkglkvaviskvyptRsHsvaAqGGiaaa 48
                D++++G+G  Gl     aa++g kvav   v pt   ++   GG++  
  MMETSP1137-20121227|8175_1 43 DLLVIGGGSGGLACSKRAAQHGKKVAVCDFVKPTPIGTTWKLGGTCVN 90
                899******************************998888888888765 PP

  == domain 2    score: -1.3 bits;  conditional E-value: 0.93
   TIGR01812 171 ktgevvvlrakavvlatGGa 190
                 k+g+ v ++a ++v+atGG 
  MMETSP1137-20121227|8175_1 174 KKGKEVDVTADTIVIATGGR 193
                 57888899**********95 PP

>> TIGR02352  thiamin_ThiO: glycine oxidase ThiO
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   0.2    0.0016      0.21       2      30 ..      45      73 ..      44      87 .. 0.81
   2 ?   -0.7   0.0         1   1.3e+02     184     204 ..     171     191 ..     159     194 .. 0.84

  Alignments for each domain:
  == domain 1    score: 8.5 bits;  conditional E-value: 0.0016
   TIGR02352  2 lviGgGviGlsvAveLakrghkvtllekd 30
                lviGgG  Gl+   ++a++g+kv++ +  
  MMETSP1137-20121227|8175_1 45 LVIGGGSGGLACSKRAAQHGKKVAVCDFV 73
                8************************9855 PP

  == domain 2    score: -0.7 bits;  conditional E-value: 1
   TIGR02352 184 vtavktssekvqadqvvlaaG 204
                 +++ k+++ +v+ad++v+a+G
  MMETSP1137-20121227|8175_1 171 TVDKKGKEVDVTADTIVIATG 191
                 5666888889**********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (528 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       196  (0.0477816); expected 82.0 (0.02)
Passed bias filter:                      185  (0.0451); expected 82.0 (0.02)
Passed Vit filter:                        60  (0.014627); expected 4.1 (0.001)
Passed Fwd filter:                        31  (0.00755729); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              31  [number of targets reported over threshold]
# CPU time: 0.84u 0.15s 00:00:00.99 Elapsed: 00:00:01.00
# Mc/sec: 696.90
//
Query:       MMETSP1137-20121227|8176_1  [L=100]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (100 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       152  (0.0370551); expected 82.0 (0.02)
Passed bias filter:                      145  (0.0353486); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.16s 00:00:00.32 Elapsed: 00:00:00.33
# Mc/sec: 399.97
//
Query:       MMETSP1137-20121227|8177_1  [L=290]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (290 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        55  (0.0134081); expected 82.0 (0.02)
Passed bias filter:                       44  (0.0107265); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.15s 00:00:00.38 Elapsed: 00:00:00.44
# Mc/sec: 869.93
//
Query:       MMETSP1137-20121227|8178_1  [L=753]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.41    6.2   5.9       0.63    5.6   4.1    1.2  1  TIGR01299 synapt_SV2: synaptic vesicle protein SV2


Domain annotation for each model (and alignments):
>> TIGR01299  synapt_SV2: synaptic vesicle protein SV2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   4.1   0.00015      0.63     612     708 ..     208     303 ..     191     328 .. 0.81

  Alignments for each domain:
  == domain 1    score: 5.6 bits;  conditional E-value: 0.00015
   TIGR01299 612 nivsallmdkigrlrmlagssvlsgvscfflsfgtsesamiallclynglsiaawnaldvltvelypsdkratafgflnalcklaavlgiliftslv 708
                  +v + l+d  g  ++   s  +s+v++  l fg++ +a++  l +  g  +       +   +l     rataf +  al ++a vlg+ +  +l 
  MMETSP1137-20121227|8178_1 208 SLVCSPLLDAFGVRTIALVSLSVSCVTVGALAFGSTRAALVFALYM-PGAELLGLALYSIGLKQLTTPATRATAFALQVALNNVAIVLGMNMVEALR 303
                 46777899****9999999*****************9999876654.56666666555666667888899********************9988763 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (753 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       130  (0.0316919); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.17s 00:00:00.63 Elapsed: 00:00:00.47
# Mc/sec: 2114.63
//
Query:       MMETSP1137-20121227|8179_1  [L=575]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   1.9e-235  780.1  26.4   2.2e-235  779.9  18.3    1.0  1  TIGR02348 GroEL: chaperonin GroL
    3.7e-24   83.2  17.3    3.2e-14   50.4   4.3    2.3  2  TIGR02339 thermosome_arch: thermosome, various subunits, archaeal
    4.6e-24   82.7   7.4      7e-13   45.8   1.3    2.2  2  TIGR02347 chap_CCT_zeta: T-complex protein 1, zeta subunit
    2.3e-20   70.2   7.8    6.2e-11   39.1   1.2    2.5  2  TIGR02345 chap_CCT_eta: T-complex protein 1, eta subunit
    2.8e-20   70.2  11.5      2e-12   44.2   2.2    2.1  2  TIGR02342 chap_CCT_delta: T-complex protein 1, delta subunit
      5e-17   59.5  12.2      5e-09   33.1   2.0    2.1  2  TIGR02341 chap_CCT_beta: T-complex protein 1, beta subunit
    2.4e-15   54.0  12.7    1.7e-12   44.6   3.2    2.1  2  TIGR02343 chap_CCT_epsi: T-complex protein 1, epsilon subunit
    6.1e-15   52.5   9.6    1.2e-07   28.5   0.6    2.2  2  TIGR02344 chap_CCT_gamma: T-complex protein 1, gamma subunit
    2.8e-13   47.0   4.3    1.2e-07   28.4   0.2    2.2  2  TIGR02346 chap_CCT_theta: T-complex protein 1, theta subunit
    4.2e-12   43.4  16.9    3.7e-09   33.6   2.3    3.1  3  TIGR02340 chap_CCT_alpha: T-complex protein 1, alpha subunit


Domain annotation for each model (and alignments):
>> TIGR02348  GroEL: chaperonin GroL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  779.9  18.3  5.4e-238  2.2e-235       1     525 [.      29     553 ..      29     554 .. 1.00

  Alignments for each domain:
  == domain 1    score: 779.9 bits;  conditional E-value: 5.4e-238
   TIGR02348   1 akeikfdeearkalekGvdkladavkvtlGPkgrnvvleksfGaPkitkdGvtvakeieledkfenlGaklvkevasktndvaGdGtttatvlaqaivkeGlknvaaGanpielkrGiekavekvveelkklskevkdkeeiaqvatisanndeeiGeliaeamekvgkdGvitveesksletelevveGmqfdrGyvspyfvtdaekmevelenplilitdkkisavkdllPllekvaksgkplliiaedvegealatlvvnklrgvlkvaavkaPgfGdrrkamlediailtggqviseelglkleevtleklGkakkvtvdkdettivegagekeaikerveqikaqieetesdydkeklqerlaklaGGvavikvGaatetelkekkarvedalnatraaveeGivaGGGvallraaekleelkeksedekvGveivkraleaPlrqiaenaGkdgavvvekvkekkdeevGfnaatdeyedlveaGiidpakvtrsalqnaasiagllltteavvadkpe 525
                 ak++ f +ear+ + +Gvdkladav+vtlGPkgrn vl++ fGaPkitkdGvtvak ie++d+  nlGa+lv++va+ktndvaGdGtttatvl++ai+ eG k+vaaG+np++l+rGi+ av++v+++lk ++k +++keei++vatisan+d eiGe+ia amekvgk+Gvitv+++k+le+elevveGm+fdrGy+spyf+t  +++++e+enplil+++kk+s+++ +lPlle+v+k+ kpl+iiaedv+gealatlvvnklrg ++vaavkaPgfGd rka l+d+a+lt+++vi+e++g+kle+++ + lG+akkvt++kd+t+i++gag k+ai+er+e +++ i+ t+s+y+keklqerlakl+GGvavikvG atete+ ekk+rv dalnatraaveeGivaGGG+all  +++l++l + + d+k Gvei+++al+ P r+ia+naG +gavvv k+ e++d ++Gfna+t+ey+d+++aGiidp+kv+rsal++aas+a+l+ ttea+v++ p+
  MMETSP1137-20121227|8179_1  29 AKDVRFGNEARALMLAGVDKLADAVQVTLGPKGRNAVLDQPFGAPKITKDGVTVAKAIEFKDRHHNLGAQLVRQVANKTNDVAGDGTTTATVLTRAIFAEGCKSVAAGMNPMDLRRGINLAVDAVLADLKARTKMISTKEEIKNVATISANSDVEIGEIIASAMEKVGKEGVITVQDGKTLENELEVVEGMKFDRGYISPYFITSPKTQKAEFENPLILLVEKKVSSLQSMLPLLEQVVKMQKPLVIIAEDVDGEALATLVVNKLRGGVNVAAVKAPGFGDNRKATLQDMAVLTNATVIAEDVGMKLETAEFSCLGTAKKVTISKDDTIILDGAGAKDAIEERCELLRESIAGTSSEYEKEKLQERLAKLSGGVAVIKVGGATETEVNEKKDRVTDALNATRAAVEEGIVAGGGTALLYSTRALKDLPTANFDQKHGVEIMMQALTVPCRTIASNAGVEGAVVVGKLLESTDPSYGFNAQTGEYVDMIAAGIIDPTKVVRSALTDAASVASLMTTTEAMVVELPK 553
                 79****************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************987 PP

>> TIGR02339  thermosome_arch: thermosome, various subunits, archaeal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.4   4.3   7.9e-17   3.2e-14      13     161 ..      34     184 ..      27     223 .. 0.83
   2 !   39.1   1.6   2.1e-13   8.7e-11     369     514 ..     405     544 ..     377     550 .. 0.86

  Alignments for each domain:
  == domain 1    score: 50.4 bits;  conditional E-value: 7.9e-17
   TIGR02339  13 kgrdalksniaaakavaeavkstlGPrGlDkmLvdslGdvtitnDGatilkemdie....hPaakllvevaktqdeevgDGtttavvlaGeLlekaedLleqdihPtviveGyrkaaekalevideiaekidvedkellkkvaetsltskava 161
                  g++a+   +a +  +a+av+ tlGP+G + +L +++G   it DG+t+ k ++ +    + +a+l+ +va+  ++ +gDGttta vl+ ++++++ + +  ++ P  + +G ++a +  l  ++  ++ i+++  e +k+va+ s +s +  
  MMETSP1137-20121227|8179_1  34 FGNEARALMLAGVDKLADAVQVTLGPKGRNAVLDQPFGAPKITKDGVTVAKAIEFKdrhhNLGAQLVRQVANKTNDVAGDGTTTATVLTRAIFAEGCKSVAAGMNPMDLRRGINLAVDAVLADLKARTKMISTK--EEIKNVATISANSDVEI 184
                 588899999999999*************************************99863321358********************************************************999999999998876..68999999998887653 PP

  == domain 2    score: 39.1 bits;  conditional E-value: 2.1e-13
   TIGR02339 369 illrGgtehvvdeleRaleDalkvvksvledgkvvaGgGavevelakrlreyaakieGreqlaveafadaleeiprilaenaGldpidalvelRakhekegnknagvdvftgeiedmlelgvieplkvkeqaiksateaatlilri 514
                 i + G te  v+e    ++Dal++ ++++e+g +vaGgG+  +  ++ l++   + +  ++  ve   +al    r++a naG++   ++ +l +  +     ++g + +tge  dm+++g+i+p kv + a++ a+ +a l+   
  MMETSP1137-20121227|8179_1 405 IKVGGATETEVNEKKDRVTDALNATRAAVEEG-IVAGGGTALLYSTRALKDL-PTANFDQKHGVEIMMQALTVPCRTIASNAGVEGAVVVGKLLESTD----PSYGFNAQTGEYVDMIAAGIIDPTKVVRSALTDAASVASLMTTT 544
                 3477899**********************987.8899998888777778776.55666777899**********************999999988777....58******************************999999887655 PP

>> TIGR02347  chap_CCT_zeta: T-complex protein 1, zeta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.8   1.3   1.7e-15     7e-13      16     197 ..      37     222 ..      24     227 .. 0.82
   2 !   39.8   0.2   1.1e-13   4.4e-11     375     516 ..     405     541 ..     399     549 .. 0.89

  Alignments for each domain:
  == domain 1    score: 45.8 bits;  conditional E-value: 1.7e-15
   TIGR02347  16 aalkvnlnaakglqdvlktnlGPkGtlkmlvsgaGdikltkdGnvllkelqiq....hPtasliaraaaaqdditGdGttstviligellkqaerlieeglhPrilteGleiakkealefleklkikkeeevdrelllevartslrtklea..eladklteivvdavlaikkdee.eidlfmveilemk 197
                 +a ++ l +   l+d ++  lGPkG   +l +  G+ k+tkdG ++ k ++ +    +  a+l+ ++a   +d++GdGtt++ +l  +++    + ++ g+ P  l  G+++a +++l  l   k +++    +e +++va  s    +e+   +a  + ++  + v ++++ ++ e +l +ve +++ 
  MMETSP1137-20121227|8179_1  37 EARALMLAGVDKLADAVQVTLGPKGRNAVLDQPFGAPKITKDGVTVAKAIEFKdrhhNLGAQLVRQVANKTNDVAGDGTTTATVLTRAIFAEGCKSVAAGMNPMDLRRGINLAVDAVLADL---KARTKMISTKEEIKNVATISANSDVEIgeIIASAMEKVGKEGVITVQDGKTlENELEVVEGMKFD 222
                 455666788899***********************************9998762221347999****************************************************987655...55566667889999999988888776521456666666678888888765524788888888765 PP

  == domain 2    score: 39.8 bits;  conditional E-value: 1.1e-13
   TIGR02347 375 ilikgpndhtlkqikdavrdGlravknaiedkcvvaGagafeiallkklkeekksvkGkaklgveafaeallviPkvlvensGydvqevlvkledeadearevvgvdletgesivaelkgiwdnysvkkqllssatviasql 516
                 i + g+++ +++  kd v d l a + a+e+ ++vaG g+  +  +++lk+   +++  +k gve++ +al v  +++++n+G +   v+ kl + +d +    g + +tge ++   +gi d  +v + +l+ a+ +as +
  MMETSP1137-20121227|8179_1 405 IKVGGATETEVNEKKDRVTDALNATRAAVEE-GIVAGGGTALLYSTRALKDL-PTANFDQKHGVEIMMQALTVPCRTIASNAGVEGAVVVGKLLESTDPS---YGFNAQTGEYVDMIAAGIIDPTKVVRSALTDAASVASLM 541
                 556789999****************999985.68888888888889999865.6788999***********9999***********99999999988877...9*********************************99854 PP

>> TIGR02345  chap_CCT_eta: T-complex protein 1, eta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.1   1.2   1.5e-13   6.2e-11      27     161 ..      46     180 ..      31     254 .. 0.74
   2 !   33.9   0.3   5.6e-12   2.3e-09     332     513 ..     373     543 ..     341     552 .. 0.78

  Alignments for each domain:
  == domain 1    score: 39.1 bits;  conditional E-value: 1.5e-13
   TIGR02345  27 cvaiaeilkttlGPrGmdklivskek.avvsndGatilklldi...vhPaakllv.diaksqdsevGdGttsvvvlagellkeakplieeglhpqliiralrealklaieklkeiaveldeeksekrevleklaatalss 161
                 + ++a++++ tlGP+G + ++ +    + ++ dG t+ k ++     h  +  lv ++a+  ++  GdGtt+ +vl+  ++ e  + +  g++p  + r+++ a+ ++++ lk  +  ++ +k    e ++++a+ + +s
  MMETSP1137-20121227|8179_1  46 VDKLADAVQVTLGPKGRNAVLDQPFGaPKITKDGVTVAKAIEFkdrHHNLGAQLVrQVANKTNDVAGDGTTTATVLTRAIFAEGCKSVAAGMNPMDLRRGINLAVDAVLADLKARTKMIS-TK----EEIKNVATISANS 180
                 67899***************99987769*********99997633257665555538999999999**********************************************98877776.33....4455555555444 PP

  == domain 2    score: 33.9 bits;  conditional E-value: 5.6e-12
   TIGR02345 332 sdleadvlGkcalfeekqiGserynlftggekakactlilrGgaeqfleeaerslhdaimivrralkakkivaGGGaielelskllrekskkidgkqqliieavakaleviPrslaenaGfdsieilnklrkkhakkgekwaGvdieteeildaleafvwePllvkknalkaateaaatils 513
                 + l+++  G+ + +e +++ +er   + gg     + + + G++e  ++e +  + da+   r a+ ++ ivaGGG+  l+ ++ l++      + q+  +e + +al v  r++a+naG +   ++ kl +      +  +G + +t e +d+++a + +P+ v + al+ a++ a+++ +
  MMETSP1137-20121227|8179_1 373 ELLRESIAGTSSEYEKEKL-QERLAKLSGG----VAVIKVGGATETEVNEKKDRVTDALNATRAAV-EEGIVAGGGTALLYSTRALKDLPTANFD-QKHGVEIMMQALTVPCRTIASNAGVEGAVVVGKLLEST----DPSYGFNAQTGEYVDMIAAGIIDPTKVVRSALTDAASVASLMTT 543
                 5555666666666666665.4555555555....344445556677899**********9998887.578*****************98755443.33457999*************************98754....559*****************************999998877655 PP

>> TIGR02342  chap_CCT_delta: T-complex protein 1, delta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.2   2.2   4.9e-15     2e-12      11     177 ..      39     209 ..      27     220 .. 0.79
   2 !   30.8   0.8   5.8e-11   2.4e-08     365     505 ..     404     539 ..     391     550 .. 0.86

  Alignments for each domain:
  == domain 1    score: 44.2 bits;  conditional E-value: 4.9e-15
   TIGR02342  11 rtsnivaakavadairtslGpkGmdkliqekkGeviitndGatilkqlev...lhp.aakllvelskaqdieaGdGttsvvvlaGalldaaekllekgihptiisesfqsaadealkilkelsipvdlsdrealiksattslsskv..vsqyssllaplavdavlkvidsekd 177
                 r   +     +ada++ +lGpkG + ++++  G   it dG t+ k +e    +h   a+l+ ++++  +  aGdGtt+  vl+ a++    k ++ g+ p+ +  +++ a+d  l  lk  ++   +s +e + ++at s +s v      +s +  +  + v+ v+d+++ 
  MMETSP1137-20121227|8179_1  39 RALMLAGVDKLADAVQVTLGPKGRNAVLDQPFGAPKITKDGVTVAKAIEFkdrHHNlGAQLVRQVANKTNDVAGDGTTTATVLTRAIFAEGCKSVAAGMNPMDLRRGINLAVDAVLADLKARTKM--ISTKEEIKNVATISANSDVeiGEIIASAMEKVGKEGVITVQDGKTL 209
                 44455556789***********************************99863324552577888898888888**************9998888899****************9876666655444..4667888899999999987313456778888889999999998654 PP

  == domain 2    score: 30.8 bits;  conditional E-value: 5.8e-11
   TIGR02342 365 svlvrGsnklvideaerslhdalcvirslvkkraliaGGGapeieialklskkarelkGvesyivrafadalevipytlaenaGlnpikvvtelrnrhaqGektaGisvrkggitdileeevlqpllvtksavtlasetvr 505
                  + v G+ +  ++e +  + dal   r+ v++ +++aGGG+  +  +++l+++  + +  +++ v  + +al v   t+a naG++   vv +l +   + + ++G + + g   d++   ++ p+ v +sa+t a+ +  
  MMETSP1137-20121227|8179_1 404 VIKVGGATETEVNEKKDRVTDALNATRAAVEE-GIVAGGGTALLYSTRALKDL-PTANFDQKHGVEIMMQALTVPCRTIASNAGVEGAVVVGKLLE---STDPSYGFNAQTGEYVDMIAAGIIDPTKVVRSALTDAASVAS 539
                 345789999999**9999**********9965.899****9988877777766.567888999******************************986...56789******************************9986544 PP

>> TIGR02341  chap_CCT_beta: T-complex protein 1, beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.1   2.0   1.2e-11     5e-09      12     136 ..      35     161 ..      25     219 .. 0.85
   2 !   31.7   1.4   3.3e-11   1.3e-08     359     512 ..     400     548 ..     370     555 .. 0.84

  Alignments for each domain:
  == domain 1    score: 33.1 bits;  conditional E-value: 1.2e-11
   TIGR02341  12 aenarlssfvgaiavgdlvkstlgpkgmdkillsasseasivvtndgatilksiald....npaakvlvdiskvqddevgdgttsvtvlaaellreaeklvnkkihpqtiiegyrlatkaalealkksa 136
                 +++ar   + g   + d v+ tlgpkg + +l      ++ ++t dg t+ k+i       n  a+++ ++++  +d  gdgtt+ tvl+  ++ e  k v++ + p  +  g  la++a l  lk+ +
  MMETSP1137-20121227|8179_1  35 GNEARALMLAGVDKLADAVQVTLGPKGRNAVLDQPF--GAPKITKDGVTVAKAIEFKdrhhNLGAQLVRQVANKTNDVAGDGTTTATVLTRAIFAEGCKSVAAGMNPMDLRRGINLAVDAVLADLKART 161
                 677888899999999****************97654..5789************9742333788999999**99***********************************99999999999888887643 PP

  == domain 2    score: 31.7 bits;  conditional E-value: 3.3e-11
   TIGR02341 359 geactivlrgatqqildeaerslhdalavlsqtvkesrtvlgggcaellmakaveeeaqk.vagkkalaveafakalrqlptiladnagfdsaelvaklraahaegnstagldleegeiadlrklgivesyklkravvssaaeaaevllrvdnii 512
                 g    i + gat+  ++e +  + dal      v+e  +v+ggg+a l  ++a+++  +   + k+   ve + +al+     +a nag++ a +v kl  +      + g++ + ge  d+ + gi++  k+ r+ ++ aa  a ++   + ++
  MMETSP1137-20121227|8179_1 400 GGVAVIKVGGATETEVNEKKDRVTDALNATRAAVEE-GIVAGGGTALLYSTRALKDLPTAnFDQKH--GVEIMMQALTVPCRTIASNAGVEGAVVVGKLLEST---DPSYGFNAQTGEYVDMIAAGIIDPTKVVRSALTDAASVASLMTTTEAMV 548
                 445567889*******************98888866.5899******999****988664044444..678899****9999****************97654...5679*******************************99999887776666 PP

>> TIGR02343  chap_CCT_epsi: T-complex protein 1, epsilon subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.6   3.2   4.2e-15   1.7e-12      23     202 ..      33     214 ..      21     221 .. 0.81
   2 !   14.3   0.7   6.1e-06    0.0025     351     508 ..     372     527 ..     349     550 .. 0.77

  Alignments for each domain:
  == domain 1    score: 44.6 bits;  conditional E-value: 4.2e-15
   TIGR02343  23 lkGleakksniaaakavasilrtslGpkGldkiliskdgditvtndGatilekmdlde...ei.akllvelsksqdeeiGdGttgvvvlasalleqaeklldkGihpikiaeGfekaakvavekleeiaeeisvdednketllkaaktslgskivskskrrlaeiavdavlavadlerkdvdfd 202
                   G ea    +a +  +a  ++ +lGpkG + +l ++ g   +t dG t+ + ++ ++   ++ a+l+ ++++  ++  GdGtt+  vl+ a++ +  k +  G+ p+ +  G + a++  ++ l+  ++ is++e+ k+    +a++     i +     + ++  + v++v d +  + +++
  MMETSP1137-20121227|8179_1  33 RFGNEARALMLAGVDKLADAVQVTLGPKGRNAVLDQPFGAPKITKDGVTVAKAIEFKDrhhNLgAQLVRQVANKTNDVAGDGTTTATVLTRAIFAEGCKSVAAGMNPMDLRRGINLAVDAVLADLKARTKMISTKEEIKNVATISANSD--VEIGEIIASAMEKVGKEGVITVQDGKTLENELE 214
                 4578888888889999*************************************99976222334788889999999999*****************************************************99777666543333333..334445556677778888999888766555555 PP

  == domain 2    score: 14.3 bits;  conditional E-value: 6.1e-06
   TIGR02343 351 aklvreksfGttkd..rllvieq.skeskavtil.vrGgnkliieeakrslhdalcvvrnlikdsrivyGGGaaeiacslaveeeadklsgveqyairafaealeeiplalaensGldpietlsevkakqlkeknpalGvdcleeGtndmkelkvletligk 508
                 ++l+re   Gt+ +  +  + e+ +k s  v+++ v G+ +  ++e k  + dal + r  ++ + iv GGG+a +  + a+++  +  +  +++ +  + +al     ++a n+G++   ++     k l+++ p++G + ++    dm    ++++    
  MMETSP1137-20121227|8179_1 372 CELLRESIAGTSSEyeKEKLQERlAKLSGGVAVIkVGGATETEVNEKKDRVTDALNATRAAVE-EGIVAGGGTALLYSTRALKDLPTA-NFDQKHGVEIMMQALTVPCRTIASNAGVEGAVVVG----KLLESTDPSYGFNAQTGEYVDMIAAGIIDPTKVV 527
                 66777777777643213333443145566776553889999*******************997.579*********999999987765.44567899999****99889*******99765554....5578899999999998888899888888876555 PP

>> TIGR02344  chap_CCT_gamma: T-complex protein 1, gamma subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.5   1.6   2.9e-10   1.2e-07      14     189 ..      35     214 ..      20     223 .. 0.82
   2 !   28.5   0.6   2.9e-10   1.2e-07     370     520 ..     404     548 ..     346     554 .. 0.82

  Alignments for each domain:
  == domain 1    score: 28.5 bits;  conditional E-value: 2.9e-10
   TIGR02344  14 GrkaqlsniqaakavadiirttlGpkamlkmlldplGgivltndGnailreidva...hpa.akslielsrtqdeevGdGttsviilaGellaaaepfleknihptvivraykkaledalkvleelsipvdvedeakllklvkssigtkfvsrwsdlvvdlaldavktvkleerngrkle 189
                 G++a+   +     +ad ++ tlGpk    +l +p G+  +t dG ++ + i+ +   h   a+ + +++   ++  GdGtt+  +l+  ++a+  + +   + p  + r+ + a++ +l  l+  +  +  ++e k    +++     + +  ++ + ++  + v tv+  ++  ++le
  MMETSP1137-20121227|8179_1  35 GNEARALMLAGVDKLADAVQVTLGPKGRNAVLDQPFGAPKITKDGVTVAKAIEFKdrhHNLgAQLVRQVANKTNDVAGDGTTTATVLTRAIFAEGCKSVAAGMNPMDLRRGINLAVDAVLADLKARTKMISTKEEIKNVATISANSDVEIGEIIASAMEKVGKEGVITVQDGKTLENELE 214
                 4444444455566789**********************************998753325542555567888888889****************************************************999999999889998888888888888888899898888888775555554 PP

  == domain 2    score: 28.5 bits;  conditional E-value: 2.9e-10
   TIGR02344 370 tillrGaskdvlnevernlqdalavarnvllepklvpGGGatelavsvklkkkakklegveqlpyeavadaleviprtlvqncGvnvirtltelrakhaqeekkalGidGetGkivdmkekgiweplavklqtiktaiesavlllriddiv 520
                  i + Ga+   +ne +  ++dal+ +r  +    +v+GGG++ l  +++lk+  ++ +  +++ +e + +al v  rt++ n+Gv+    + +l       +  ++G + +tG+ vdm  +gi +p+ v   ++  a   a+l+   + +v
  MMETSP1137-20121227|8179_1 404 VIKVGGATETEVNEKKDRVTDALNATRAAVE-EGIVAGGGTALLYSTRALKDLPTA-NFDQKHGVEIMMQALTVPCRTIASNAGVEGAVVVGKLLES----TDPSYGFNAQTGEYVDMIAAGIIDPTKVVRSALTDAASVASLMTTTEAMV 548
                 455678888899************9998765.568999999988888888776554.456788999********************99999888643....44679***********************9999999999999987766665 PP

>> TIGR02346  chap_CCT_theta: T-complex protein 1, theta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.4   0.2     3e-10   1.2e-07      26     150 ..      45     172 ..      28     202 .. 0.83
   2 !   19.9   0.2   1.1e-07   4.4e-05     364     507 ..     402     538 ..     390     553 .. 0.84

  Alignments for each domain:
  == domain 1    score: 28.4 bits;  conditional E-value: 3e-10
   TIGR02346  26 aikelseitrtslGPngmnklvinhleklfvtnDaatilrelevq...hP.aakllvlaskaqeeelGDgtnlvlvlagelLekaeelirlGlspseiikGyelalkkalevLeelvvlevkdleekee 150
                  + +l++ ++ +lGP+g+n ++   +    +t+D +t+ + +e +   h   a+l+ +++++ +   GDgt  + vl+ +++++  + +  G++p+++ +G +la++++l+ L+      ++++ee ++
  MMETSP1137-20121227|8179_1  45 GVDKLADAVQVTLGPKGRNAVLDQPFGAPKITKDGVTVAKAIEFKdrhHNlGAQLVRQVANKTNDVAGDGTTTATVLTRAIFAEGCKSVAAGMNPMDLRRGINLAVDAVLADLKARTK-MISTKEEIKN 172
                 56789999********************************99986332433589999999999999*****************************************99998875332.2333333333 PP

  == domain 2    score: 19.9 bits;  conditional E-value: 1.1e-07
   TIGR02346 364 istivLrGstknllddieraidDGvnvvkalvkdsrllpGagateieLakklkkyaeklkgleqyaikkfaeafeiiPrtlaenaGlnanevlskLyaahkkgnkslgidiekesdavkdvkeekiyDllaakkfaiklateaa 507
                 ++ i + G+t++ +++    + D +n+ +a+v ++ +++G+g++ +  +++lk++  +  + +++ ++   +a  +  rt+a naG++   v+ kL  +    + s+g + ++++    d+  + i D  +  ++a+  a+  a
  MMETSP1137-20121227|8179_1 402 VAVIKVGGATETEVNEKKDRVTDALNATRAAVEEG-IVAGGGTALLYSTRALKDLPTANFD-QKHGVEIMMQALTVPCRTIASNAGVEGAVVVGKLLEST---DPSYGFNAQTGEY--VDMIAAGIIDPTKVVRSALTDAASVA 538
                 7788899************************9875.8999999999999999999877666.789*******************************9776...5688888887777..68888888888877777777666554 PP

>> TIGR02340  chap_CCT_alpha: T-complex protein 1, alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.6   2.3   9.1e-12   3.7e-09       9     156 ..      34     182 ..      26     208 .. 0.84
   2 ?    1.6   0.4     0.045        18     308     366 ..     311     365 ..     297     370 .. 0.81
   3 !   16.7   0.4   1.2e-06    0.0005     368     511 ..     402     532 ..     370     557 .. 0.71

  Alignments for each domain:
  == domain 1    score: 33.6 bits;  conditional E-value: 9.1e-12
   TIGR02340   9 sGedvrkqnvlavvavanivktslGPvGldkmlvddvGdvtitndGatilkklevehP....aakvlvelaqlqdkevGdGttsvvilaaellkradelvkrkvhPtsvisGyrlalkeavkyikeklavsveel.gkealinvaktslsski 156
                  G+++r   +  v ++a++v+ +lGP G + +l    G   it dG t+ k +e ++      a+++ ++a++ +   GdGtt+  +l+ +++ ++ + v+  + P  +  G +la+   +  +k     +++ + +ke + nva  s  s +
  MMETSP1137-20121227|8179_1  34 FGNEARALMLAGVDKLADAVQVTLGPKGRNAVLDQPFGAPKITKDGVTVAKAIEFKDRhhnlGAQLVRQVANKTNDVAGDGTTTATVLTRAIFAEGCKSVAAGMNPMDLRRGINLAVDAVLADLK----ARTKMIsTKEEIKNVATISANSDV 182
                 577888888888999******************99******************9975422225778889999999999*************************************9987766554....444444257888899988887765 PP

  == domain 2    score: 1.6 bits;  conditional E-value: 0.045
   TIGR02340 308 kkedlkriakatGatlvssladleGeetleasllGeaeevveeriaddelilikgtkkk 366
                 +k  l+ +a  t at+++    ++  et e s+lG+a++v+   i+ d+ i++ g+ +k
  MMETSP1137-20121227|8179_1 311 RKATLQDMAVLTNATVIAEDVGMKL-ETAEFSCLGTAKKVT---ISKDDTIILDGAGAK 365
                 5778889999999999887777764.788999*****9985...899999999987665 PP

  == domain 3    score: 16.7 bits;  conditional E-value: 1.2e-06
   TIGR02340 368 sasiilrGandvlldemerslhdalcvvkrtleskkvvaGgGaveaalsiyleel.attlgsreqlaiaefaealliiPkvlavnaakdstelvaklralhaaaqlkeekkklkflGldlsngkirdnveaGvlePavskvkslk 511
                 +a i + Ga ++ ++e +  + dal + + ++e + v  Gg a+  +    l++l +  ++++  + i    +al +  +++a+na+ + + +v kl  + +            ++G++ ++g+ +d + aG+++P+      l 
  MMETSP1137-20121227|8179_1 402 VAVIKVGGATETEVNEKKDRVTDALNATRAAVEEGIVAGGGTALLYSTR-ALKDLpTANFDQKHGVEI--MMQALTVPCRTIASNAGVEGAVVVGKLLESTD-----------PSYGFNAQTGEYVDMIAAGIIDPTKVVRSALT 532
                 4667789***********************9997755555555555555.555551556666666666..578999999*****************985432...........36889999999999999999999744333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (575 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       192  (0.0468064); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                        10  (0.00243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.59u 0.15s 00:00:00.74 Elapsed: 00:00:00.71
# Mc/sec: 1068.93
//
Query:       MMETSP1137-20121227|8181_1  [L=62]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (62 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        35  (0.00853242); expected 82.0 (0.02)
Passed bias filter:                       30  (0.00731351); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.11s 00:00:00.23 Elapsed: 00:00:00.24
# Mc/sec: 340.97
//
Query:       MMETSP1137-20121227|8182_1  [L=800]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (800 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        90  (0.0219405); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.17s 00:00:00.63 Elapsed: 00:00:00.43
# Mc/sec: 2455.61
//
Query:       MMETSP1137-20121227|8183_1  [L=45]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (45 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        22  (0.00536324); expected 82.0 (0.02)
Passed bias filter:                       22  (0.00536324); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.15s 00:00:00.25 Elapsed: 00:00:00.23
# Mc/sec: 258.24
//
Query:       MMETSP1137-20121227|8185_1  [L=227]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.9e-27   92.7   1.9    3.9e-27   92.2   1.3    1.2  1  TIGR00952 S15_bact: ribosomal protein S15
  ------ inclusion threshold ------
       0.01   13.8   0.0        2.1    6.3   0.0    2.2  2  TIGR01909 C_GCAxxG_C_C: C_GCAxxG_C_C family protein


Domain annotation for each model (and alignments):
>> TIGR00952  S15_bact: ribosomal protein S15
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.2   1.3   1.9e-30   3.9e-27       7      85 ..     132     210 ..     125     211 .. 0.95

  Alignments for each domain:
  == domain 1    score: 92.2 bits;  conditional E-value: 1.9e-30
   TIGR00952   7 eiikefqlhekDtGsaevqiallterikkLteHlkankkDhssrrgLlklvgkRrrLlkylkkkdverYrelikkLglr 85 
                 ++ +++++he+D Gsa+vqia+l++ri+ +t H+++nkkD +s rgL ++v++Rr+Ll+yl k+d+e +++l ++Lg+r
  MMETSP1137-20121227|8185_1 132 DMKAKYKTHENDCGSAQVQIAVLSARIQYMTAHMQQNKKDYASLRGLTRMVTRRRKLLEYLLKNDIELFKRLTSELGIR 210
                 55679*************************************************************************9 PP

>> TIGR01909  C_GCAxxG_C_C: C_GCAxxG_C_C family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   0.0    0.0018       3.7      10      80 ..      19      89 ..      14      95 .. 0.86
   2 ?    6.3   0.0     0.001       2.1      41      81 ..     144     185 ..     125     207 .. 0.87

  Alignments for each domain:
  == domain 1    score: 5.5 bits;  conditional E-value: 0.0018
   TIGR01909 10 alreefnldlaeealklasgfggGvaGagsiCGAvtGavmvlslifg.megkeekvnktyalakellekfre 80
                a+r+ +++  a   ++++ ++++G+  +   C A+    +++ +    m++  +++ +t a + ++ e + +
  MMETSP1137-20121227|8185_1 19 AARQILDVFSAAAPVSMGLALTSGLI-MAPACPAIRTCSAAAPIACRpMMQAPDQSTETSAPTDDFTEDLLD 89
                67777777777778999999999*99.999*****99999999999999***************99998765 PP

  == domain 2    score: 6.3 bits;  conditional E-value: 0.001
   TIGR01909  41 CGAvtGavmvlslifg.megkeekvnktyalakellekfrek 81 
                 CG ++  ++vls +   m ++ ++ +k ya  ++l + +  +
  MMETSP1137-20121227|8185_1 144 CGSAQVQIAVLSARIQyMTAHMQQNKKDYASLRGLTRMVTRR 185
                 **************9989999999999999999998876655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (227 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       146  (0.0355924); expected 82.0 (0.02)
Passed bias filter:                      104  (0.0253535); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.21u 0.15s 00:00:00.36 Elapsed: 00:00:00.52
# Mc/sec: 576.18
//
Query:       MMETSP1137-20121227|8186_1  [L=140]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (140 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       237  (0.0577767); expected 82.0 (0.02)
Passed bias filter:                      137  (0.0333983); expected 82.0 (0.02)
Passed Vit filter:                        19  (0.00463189); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.17s 00:00:00.35 Elapsed: 00:00:00.35
# Mc/sec: 527.96
//
Query:       MMETSP1137-20121227|8187_1  [L=169]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (169 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        53  (0.0129205); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.11s 00:00:00.28 Elapsed: 00:00:00.28
# Mc/sec: 769.18
//
Query:       MMETSP1137-20121227|8188_1  [L=132]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (132 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        59  (0.0143832); expected 82.0 (0.02)
Passed bias filter:                       41  (0.00999512); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.12s 00:00:00.28 Elapsed: 00:00:00.28
# Mc/sec: 600.78
//
Query:       MMETSP1137-20121227|8189_1  [L=730]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (730 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       103  (0.0251097); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.14s 00:00:00.57 Elapsed: 00:00:00.50
# Mc/sec: 1927.04
//
Query:       MMETSP1137-20121227|8191_1  [L=480]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0011   16.3   0.0     0.0057   14.0   0.0    1.9  2  TIGR00573 dnaq: exonuclease, DNA polymerase III, epsilon subunit family
     0.0015   14.6   0.0     0.0023   14.0   0.0    1.2  1  TIGR01407 dinG_rel: putative DnaQ family exonuclease/DinG family helicase
  ------ inclusion threshold ------
      0.022   10.2   0.0      0.028    9.9   0.0    1.1  1  TIGR01405 polC_Gram_pos: DNA polymerase III, alpha subunit, Gram-positive type


Domain annotation for each model (and alignments):
>> TIGR00573  dnaq: exonuclease, DNA polymerase III, epsilon subunit family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.0   4.2e-06    0.0057      60     105 ..      75     120 ..      61     132 .. 0.89
   2 ?   -0.8   0.0      0.14   1.9e+02     156     172 ..     157     173 ..     136     178 .. 0.85

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 4.2e-06
   TIGR00573  60 ihgitddmLkdkpdfkevaedfadyikgkvLvihnasfDvgFlnae 105
                 + gi ++ L+ +p+f  v     + ++g vL++h+++ D+  l+ +
  MMETSP1137-20121227|8191_1  75 VSGILPQHLEKAPTFEQVQARAGEILNGRVLIGHAVENDLKALKLA 120
                 88************************************99888766 PP

  == domain 2    score: -0.8 bits;  conditional E-value: 0.14
   TIGR00573 156 lhgaladAfilaelylv 172
                 +h  + dA++++ l+++
  MMETSP1137-20121227|8191_1 157 AHSPVEDARVCLRLFKL 173
                 79999**********86 PP

>> TIGR01407  dinG_rel: putative DnaQ family exonuclease/DinG family helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.0   1.7e-06    0.0023      46      96 ..      68     118 ..      56     131 .. 0.88

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 1.7e-06
   TIGR01407  46 ippfIqeLTgisdeqlkqAPeFsqvaqeiydlledgiFVAHNvhFDlnlla 96 
                 ++  +    gi  ++l++AP+F+qv ++  ++l++ + + H v+ Dl  l+
  MMETSP1137-20121227|8191_1  68 VDDYLTWVSGILPQHLEKAPTFEQVQARAGEILNGRVLIGHAVENDLKALK 118
                 6666677789999*********************************98876 PP

>> TIGR01405  polC_Gram_pos: DNA polymerase III, alpha subunit, Gram-positive type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.0     2e-05     0.028     193     308 ..      28     134 ..      16     177 .. 0.68

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 2e-05
   TIGR01405 193 vfDiettGlspkldeiielaavkvkngkiiekfelfikpeeklsekvteltgitdemlenakeleevleklkeflkdavlvahnasfDlgflktkfekvnleelenpviDtLelar 308
                  +D e   l +  + +   + v  +   + +++      ++++++  t + gi  ++le+a + e+v  +  e+l+++vl+ h +  Dl+ lk         +  + +iDt +l +
  MMETSP1137-20121227|8191_1  28 ALDCEMIQLRGGRQALARCSVVNWHGAALFDEYV--HTCSSNVDDYLTWVSGILPQHLEKAPTFEQVQARAGEILNGRVLIGHAVENDLKALKLA-------HPAELTIDTQQLDW 134
                 5666666666666666666666666666666553..356789999*****************************************999888765.......33444556655554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (480 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       107  (0.0260848); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.37u 0.15s 00:00:00.52 Elapsed: 00:00:00.68
# Mc/sec: 931.69
//
Query:       MMETSP1137-20121227|8192_1  [L=421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.3e-19   67.5   0.0    5.2e-19   66.4   0.0    1.5  1  TIGR00046 TIGR00046: RNA methyltransferase, RsmE family


Domain annotation for each model (and alignments):
>> TIGR00046  TIGR00046: RNA methyltransferase, RsmE family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.4   0.0   1.3e-22   5.2e-19      20     239 ..     171     417 ..     160     418 .. 0.79

  Alignments for each domain:
  == domain 1    score: 66.4 bits;  conditional E-value: 1.3e-22
   TIGR00046  20 eeevhHlvrvlRlkkgdklklldgdgeiyka.elkk......iskkkvkvklleaesee...relplkvhlaivlikgkklekiirklteLGvskiipllaersvvkldaeakkKle...rwqkivieaaeQsgrnivpeikavknlk..............eklaeaeeealklnlhleasalsknleieakkiviiiGPEGGfse.kEiqllkekgfkevsLgkriLRteTAvvaalsilqalled 239
                 + +  H++  l+lk+ + l +   dg + ++ e +       +sk+   ++l  +   +   +e+  kv ++++++++ ++ +i++ l ++Gv +i +  a r ++++ ++   K e   +    + e++ Q g ++vp+ ++  +l               + + +  ++ l ++ +   +a  + +e   ++i++++GPE+G+ e kE +l++  +f++v Lg+r+LRt+ A+v+ l++++a+l +
  MMETSP1137-20121227|8192_1 171 DPRFRHVKDHLKLKEKETLRVGVIDGGVNDSaEATWvssdavDSKEALRLELGDRSLLDvpnVENCPKVDVLLAMPRPLQFARILPMLSSVGVGTIWLTGAKRVEKSYFSSHLLKEEnadQLRAALVEGLVQAGDTVVPKFRFHRSLRhsledirxaxasleNPAIKWLCHPLRIGDYDTLHAMRAPVE-RSSRILVAVGPERGWDEpKELELFADEDFQQVTLGPRTLRTDVATVSLLAVAHARLAE 417
                 56778999999999999999998888876531333211111155666677777776655111577889****************************************9995555551225666799*********************99999998776665444455555666666666666666666.699************9967*******************************99998865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (421 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       104  (0.0253535); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.29u 0.21s 00:00:00.50 Elapsed: 00:00:00.35
# Mc/sec: 1587.64
//
Query:       MMETSP1137-20121227|8193_1  [L=529]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (529 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       233  (0.0568016); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.17s 00:00:00.55 Elapsed: 00:00:00.47
# Mc/sec: 1485.58
//
Query:       MMETSP1137-20121227|8194_1  [L=76]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (76 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        17  (0.00414432); expected 82.0 (0.02)
Passed bias filter:                       17  (0.00414432); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.16s 00:00:00.27 Elapsed: 00:00:00.34
# Mc/sec: 295.03
//
Query:       MMETSP1137-20121227|8195_1  [L=599]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (599 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       112  (0.0273038); expected 82.0 (0.02)
Passed bias filter:                      104  (0.0253535); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.16s 00:00:00.56 Elapsed: 00:00:00.56
# Mc/sec: 1387.04
//
Query:       MMETSP1137-20121227|8197_1  [L=389]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.6e-89  297.2   7.0      1e-88  295.2   4.9    1.9  1  TIGR03626 L3_arch: archaeal ribosomal protein L3
    1.2e-09   36.1   9.1    1.7e-09   35.7   3.6    2.7  3  TIGR03625 L3_bact: 50S ribosomal protein L3


Domain annotation for each model (and alignments):
>> TIGR03626  L3_arch: archaeal ribosomal protein L3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  295.2   4.9   5.1e-92     1e-88       2     331 .]       8     364 ..       7     364 .. 0.86

  Alignments for each domain:
  == domain 1    score: 295.2 bits;  conditional E-value: 5.1e-92
   TIGR03626   2 rprrGslafsPRkRakrivprirsWPevd..gevkllafagykvGmtHvvlvddrknsptegkevvvpvtvleaPplkvlairaYekdekgekvlaevwaeeldkelkrkltll....kkedveekl.......eklkeklek..ekvedvrllvatqpklvtgvpkkkPevleiriggksveekleyalellgkeisvkdvfkeGelvDviavtkGkGfqGvvkRfgvkllkrkhkrkkkeRkvGtlgpwtpsrvrwtvpqaGqmGyhqRteynkrilkigedgee.............itpkgGfvnYGlvrndyvlikGsvpGpskRlivlReaiRpk..kkkvkepeityislesk 331
                 rpr+Gsl+f P+kRa+r+ ++++s+P+ d  + ++l af +yk+GmtH++   d++ s+ + kevv +v vle+Pp++v++i  Y ++++g ++l+ vwae+l++elkr++ +     kk+   + +       +++ +++ek  +  + vr+l +tq ++++ +++kk  ++ei+i+g +v  k+++al+l+ ke+ v+ vf + e+ Dvi+vtkG+G++Gvv R+gv+ l+rk++r    Rkv  +g+w+p++v+++v++aGq Gyh+Rte+nk++ kig+ g e             i+p gGf +YGlvr+dy+l+kG + Gp+kR+i+lR+++ ++  +++++e+++++i ++sk
  MMETSP1137-20121227|8197_1   8 RPRHGSLGFLPKKRASRHRGKVKSFPKDDpsKPPHLTAFLAYKAGMTHITRDVDKPGSKAHKKEVVEAVSVLETPPMRVVGIVGYVQTSNGIRALTTVWAEHLNDELKRRFYKNwykcKKKAFTKYVkkyadgqKDIDAEVEKikKYCQVVRVLSHTQIRKLK-LGQKKAHLMEIQINGGDVAAKVDFALNLFEKEVPVDGVFAQNEMLDVIGVTKGHGYEGVVSRWGVTRLPRKTHRG--LRKVACIGAWHPAKVQYSVARAGQHGYHHRTEMNKKVYKIGKGGVEnnattefdlteknINPVGGFPHYGLVREDYMLLKGNIVGPKKRVITLRKSLFEQtsRNAAEEITLKFIDTSSK 364
                 8***************************9877899****************99*********************************************************96541111222222222000000022333333211245679**********76.**********************************************************************98765..5***************************************9865444455667777778*************************************98883355566677789999886 PP

>> TIGR03625  L3_bact: 50S ribosomal protein L3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.2     0.071   1.5e+02      17      60 ..      71     116 ..      45     162 .. 0.55
   2 !   35.7   3.6   8.2e-13   1.7e-09      41     178 ..     139     285 ..     124     290 .. 0.69
   3 ?    0.2   0.0      0.06   1.2e+02     182     201 ..     319     338 ..     316     339 .. 0.85

  Alignments for each domain:
  == domain 1    score: -0.1 bits;  conditional E-value: 0.071
   TIGR03625  17 gklvpvtvievepnvvvqvk..tkekdgyeavqlgfgekkekkvnk 60 
                   + +v+v+e  p++vv +    + ++g +a++    e+ + ++++
  MMETSP1137-20121227|8197_1  71 EVVEAVSVLETPPMRVVGIVgyVQTSNGIRALTTVWAEHLNDELKR 116
                 3344788888888888876411455667777666555544433333 PP

  == domain 2    score: 35.7 bits;  conditional E-value: 8.2e-13
   TIGR03625  41 dgyeavqlgfgekke..kkvnkpeaghfkkagve.akrvlkefrvee...aeelev.....gdeikv.dlfeegekvdvtgtskGkGfaGvikrhnfkggp.asHGsskshRapGSigqrqtpgrvfkgkkmaGhlGnekvtvqnLevvkv 178
                 dg + +   ++++k+  + v+   + +++k ++  +k +l+e++ +    a++++       +e+ v  +f++ e++dv g++kG+G+ Gv+ r++ ++ p ++H      R+   ig+ + p++v      aG+ G +++t  n +v k+
  MMETSP1137-20121227|8197_1 139 DGQKDIDAEVEKIKKycQVVRVLSHTQIRKLKLGqKKAHLMEIQINGgdvAAKVDFalnlfEKEVPVdGVFAQNEMLDVIGVTKGHGYEGVVSRWGVTRLPrKTHR---GLRKVACIGAWH-PAKVQYSVARAGQHGYHHRTEMNKKVYKI 285
                 5555555555554442222333344455566554355667776665433322222211111467778559***************************997626774...47*******998.***********************999987 PP

  == domain 3    score: 0.2 bits;  conditional E-value: 0.06
   TIGR03625 182 knlllvkGavpGakgslvlv 201
                 +  +l+kG++ G+k+ ++++
  MMETSP1137-20121227|8197_1 319 EDYMLLKGNIVGPKKRVITL 338
                 56899**********99887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (389 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       178  (0.0433935); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                        18  (0.0043881); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.37u 0.16s 00:00:00.53 Elapsed: 00:00:00.42
# Mc/sec: 1222.47
//
Query:       MMETSP1137-20121227|8198_1  [L=461]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   2.5e-200  663.4   0.0   3.1e-200  663.1   0.0    1.0  1  TIGR02006 IscS: cysteine desulfurase IscS
   1.2e-145  482.9   0.0   1.5e-145  482.6   0.0    1.1  1  TIGR03402 FeS_nifS: cysteine desulfurase NifS
   4.1e-138  458.3   0.0   4.9e-138  458.1   0.0    1.0  1  TIGR03235 DNA_S_dndA: cysteine desulfurase DndA
   3.4e-113  376.1   0.0     4e-113  375.9   0.0    1.0  1  TIGR03403 nifS_epsilon: cysteine desulfurase, NifS family
    1.1e-53  180.3   0.1    4.8e-52  175.0   0.1    2.1  1  TIGR01979 sufS: cysteine desulfurase, SufS family
    1.7e-50  170.0   0.0    1.5e-49  166.8   0.0    2.0  1  TIGR01977 am_tr_V_EF2568: cysteine desulfurase family protein
      1e-34  118.2   0.1      4e-34  116.3   0.1    1.8  1  TIGR03392 FeS_syn_CsdA: cysteine desulfurase, catalytic subunit CsdA
    2.1e-31  107.4   0.1    2.1e-29  100.9   0.1    2.0  1  TIGR01976 am_tr_V_VC1184: cysteine desulfurase family protein
    4.7e-12   43.2   0.2    6.9e-12   42.7   0.1    1.1  1  TIGR03812 tyr_de_CO2_Arch: tyrosine decarboxylase MnfA
    3.7e-10   37.5   0.0    8.5e-10   36.3   0.0    1.4  1  TIGR03301 PhnW-AepZ: 2-aminoethylphosphonate aminotransferase
    1.1e-09   35.7   0.1    1.8e-09   35.0   0.1    1.2  1  TIGR02326 transamin_PhnW: 2-aminoethylphosphonate--pyruvate transaminase
    6.9e-07   26.4   0.3    1.7e-06   25.1   0.0    1.7  2  TIGR02539 SepCysS: Sep-tRNA:Cys-tRNA synthase
    0.00036   17.1   0.1    0.00063   16.3   0.0    1.3  1  TIGR01325 O_suc_HS_sulf: O-succinylhomoserine sulfhydrylase
    0.00068   16.0   0.0    0.00098   15.4   0.0    1.2  1  TIGR03799 NOD_PanD_pyr: putative pyridoxal-dependent aspartate 1-decarboxylase
     0.0027   14.3   0.3     0.0039   13.8   0.2    1.1  1  TIGR01326 OAH_OAS_sulfhy: O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase


Domain annotation for each model (and alignments):
>> TIGR02006  IscS: cysteine desulfurase IscS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  663.1   0.0  1.1e-202  3.1e-200       4     402 .]      62     461 .]      60     461 .] 0.99

  Alignments for each domain:
  == domain 1    score: 663.1 bits;  conditional E-value: 1.1e-202
   TIGR02006   4 piyldyaattpvdkrvaekmleyltvkfGnpasrshkfGweaeeavenarkevaeligadsreivftsGatesdnlaikGvakfykskgkhiitsktehkavldtcrelereGfevtylevkedGlidleelkaairddtilvsvmavnneiGviqdiaaigelcrerkvlfhvdaaqsvGkvpidleelkvdllslsahkiyGpkGiGalyvrrkprvrlealihGGGherGlrsGtlpthqivGlGeafriakeelakdtarvlklrdkllngies.ieevylngdleqrvksnlnvsfnyveGeslilalkdlavssGsactsaslepsyvlralGlndelahssirftlGrftteeeidyavklvkeavdklrelsplwemlkeGvdlnsiewaah 402
                  iyld +attp+d+rv+++m++y+t  +Gnp+s++h++Gwe++eave+ar++va+l+ga+ +ei+ftsGates+n+aikGva+fy   ++hiit++tehk+vl +cr+l++ Gf+vt+l+vk+dGl+d++el aa+r dt lvsvm+vnneiGviq+i++ig+lc+ rkv+fhvdaaq+vGk+++d+++l +dl+s+sahk+yGpkGiGalyvrr+prvrle++  GGG+erGlrsGtlp+++ vG+G a+ +a+ e+++d a+v+ l+++l++gi+  i +  +ng++e+r+++nlnvsf+yveGesl++alkd+avssGsactsaslepsyvlralG+++e+ah+sirf++Grf+te e+dya+++  ++vd+lre+splwem++eG+d+++i+w++h
  MMETSP1137-20121227|8198_1  62 AIYLDSQATTPLDPRVLDAMMPYMTGMYGNPHSKTHAYGWETNEAVEKARDQVASLVGAEGKEIIFTSGATESNNMAIKGVANFYXATKNHIITTQTEHKCVLXSCRYLQQXGFDVTFLPVKQDGLVDVDELAAAMRPDTGLVSVMYVNNEIGVIQPIEQIGKLCKXRKVFFHVDAAQAVGKIAVDVNKLGIDLMSISAHKLYGPKGIGALYVRRRPRVRLEPIFSGGGQERGLRSGTLPAPLAVGFGAACAVAQTEMERDAAHVEXLMKRLVDGINAnIPHATINGSMESRYAGNLNVSFAYVEGESLLMALKDIAVSSGSACTSASLEPSYVLRALGVDEEMAHTSIRFGIGRFSTEAEVDYAIEVCIKHVDRLREMSPLWEMVQEGIDIKTINWSQH 461
                 69**********************************************************************************************************************************************************************************************************************************************************************************988**********************************************************************************************************************987 PP

>> TIGR03402  FeS_nifS: cysteine desulfurase NifS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  482.6   0.0  5.4e-148  1.5e-145       1     379 []      63     443 ..      63     443 .. 0.98

  Alignments for each domain:
  == domain 1    score: 482.6 bits;  conditional E-value: 5.4e-148
   TIGR03402   1 vYlDnnattkvdpevleamlpyltekfGnpss.lhsfgkevkkaveeaRekvakllgaeeeeiiftsggtesdntaiksalaakk.ekkhiittavehpavlslceyLekegykvtylpvdeeGrldleelkkaltdetilvsvmyanneiGtifpieeiaklakekgvlfhtDavqavGkvpidlkeleidllslsghklhaPkgvgalyirkg..vklepllrGGhqergrRagtenvpgivglgkaielaaeeleeenekvkalRdrlekgllekipkarvnGdkekRlpntvnisfefiegeailllldkegiaassGsaCtsgslepshvlramgvpaevahGslRlslsrenteedvdkvlevlpeiverlRelspl 379
                 +YlD +att +dp+vl+am+py+t ++Gnp s +h++g e+++ave+aR++va+l+gae +eiiftsg+tes+n+aik++++     k+hiitt+ eh+ vl  c+yL++ g+ vt lpv+++G +d++el +a++ +t lvsvmy nneiG+i+pie+i+kl+k ++v+fh+Da qavGk+++d+++l idl+s+s+hkl++Pkg+galy+r+   v+lep++ GG+qerg R+gt   p  vg+g a+ +a++e+e+++++v+ l  rl +g+ ++ip+a++nG+ e+R ++++n+sf+++ege++l+ l+   ia+ssGsaCts+sleps+vlra+gv +e+ah s+R+ ++r +te++vd+ +ev  + v+rlRe+spl
  MMETSP1137-20121227|8198_1  63 IYLDSQATTPLDPRVLDAMMPYMTGMYGNPHSkTHAYGWETNEAVEKARDQVASLVGAEGKEIIFTSGATESNNMAIKGVANFYXaTKNHIITTQTEHKCVLXSCRYLQQXGFDVTFLPVKQDGLVDVDELAAAMRPDTGLVSVMYVNNEIGVIQPIEQIGKLCKXRKVFFHVDAAQAVGKIAVDVNKLGIDLMSISAHKLYGPKGIGALYVRRRprVRLEPIFSGGGQERGLRSGTLPAPLAVGFGAACAVAQTEMERDAAHVEXLMKRLVDGINANIPHATINGSMESRYAGNLNVSFAYVEGESLLMALK--DIAVSSGSACTSASLEPSYVLRALGVDEEMAHTSIRFGIGRFSTEAEVDYAIEVCIKHVDRLREMSPL 443
                 8*****************************7758*********************************************998765167****************************************************************************************************************************99544999*****************************************************************************************9995..79****************************************************************96 PP

>> TIGR03235  DNA_S_dndA: cysteine desulfurase DndA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  458.1   0.0  1.8e-140  4.9e-138       1     352 [.      64     413 ..      64     414 .. 0.99

  Alignments for each domain:
  == domain 1    score: 458.1 bits;  conditional E-value: 1.8e-140
   TIGR03235   1 YLDvnattpvdpevaevvrpflleefGnassrthefgakakkavekarkqvaealgadkeeviftsgatesnnlallGlaeygeqkgkkhiitsaiehkavlepikfLeenGftvtylevdesGridveelkeairedtllvslmavnnevGslqpireiaevleerevflhvDaaqvvgkiavdlsakridlisvsghkiygPkGiGalvirkrrkkkaplkPllfGGGqergLrpGtLpvalivGlgeaaeiarknaeakekklralknklldaLkt..levklngdpaekipnvlnlsidgvnsealivaLkavvavstgsaCssskyepshvLkamgldedrlasalrfs 352
                 YLD +attp+dp+v +++ p+++  +Gn+ s+th++g + ++avekar qva+++ga+ +e+iftsgatesnn+a++G+a++   + k+hiit++ ehk+vl ++++L++ Gf vt+l+v+++G +dv+el+ a+r+dt lvs+m vnne+G++qpi++i+++++ r+vf+hvDaaq+vgkiavd+++  idl+s+s+hk+ygPkGiGal++r+   ++++l+P++ GGGqergLr+GtLp +l vG+g a+++a+++ e +  + + l ++l+d ++   +++++ng ++++ + +ln+s+  v+ e+l++aLk+ +avs+gsaC+s+++eps+vL+a+g+de+ +++++rf 
  MMETSP1137-20121227|8198_1  64 YLDSQATTPLDPRVLDAMMPYMTGMYGNPHSKTHAYGWETNEAVEKARDQVASLVGAEGKEIIFTSGATESNNMAIKGVANFYXAT-KNHIITTQTEHKCVLXSCRYLQQXGFDVTFLPVKQDGLVDVDELAAAMRPDTGLVSVMYVNNEIGVIQPIEQIGKLCKXRKVFFHVDAAQAVGKIAVDVNKLGIDLMSISAHKLYGPKGIGALYVRR--RPRVRLEPIFSGGGQERGLRSGTLPAPLAVGFGAACAVAQTEMERDAAHVEXLMKRLVDGINAniPHATINGSMESRYAGNLNVSFAYVEGESLLMALKD-IAVSSGSACTSASLEPSYVLRALGVDEEMAHTSIRFG 413
                 9**********************************************************************************999.8*****************************************************************************************************************************9..789**********************************************************99889********************************96.89*********************************95 PP

>> TIGR03403  nifS_epsilon: cysteine desulfurase, NifS family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  375.9   0.0  1.4e-115    4e-113       1     380 [.      63     441 ..      63     443 .. 0.97

  Alignments for each domain:
  == domain 1    score: 375.9 bits;  conditional E-value: 1.4e-115
   TIGR03403   1 vyldnnattlldpkvkelmepflkdiygnpns.lhkfgtethpaiaealdklykginardeddivitscatesnnwvlkgvyfdeilkkeknhiittevehpavraacafleslgvevtylpvneqgvitaeqvreaitektalvsvmwannetglifpikeigelckekgvlfhtdavqavgkipvdvqkvkvdflsfsahkfhgpkgvgalyikk..gveltpllhggehmsgrrsgtlnvpyivamgealklaveyldfekssvrklrdkledal.lelpdvlvvgdrehrvpntilisikgvegeamlwdlnkagiaastgsacasedleanpvmvaigadkelahtairlslsrftteeeidyaievfkkaverlrais 380
                 +yld +att ldp+v + m+p+++ +ygnp s  h +g et  a+++a d++   ++a+   +i++ts atesnn  +kgv   +    +knhiitt+ eh +v  +c++l++ g +vt+lpv ++g ++++++  a++ +t lvsvm+ nne g+i pi++ig+lck + v+fh da qavgki vdv+k+ +d++s+sahk++gpkg+galy+++   v+l p++ gg   +g rsgtl  p  v++g a  +a++ ++ + ++v+ l  +l d +  ++p +++ g+ e r    + +s   vege++l  l   +ia s+gsac+s  le   v+ a+g d+e+aht+ir+ + rf+te+e+dyaiev  k v+rlr +s
  MMETSP1137-20121227|8198_1  63 IYLDSQATTPLDPRVLDAMMPYMTGMYGNPHSkTHAYGWETNEAVEKARDQVASLVGAEG-KEIIFTSGATESNNMAIKGVA--NFYXATKNHIITTQTEHKCVLXSCRYLQQXGFDVTFLPVKQDGLVDVDELAAAMRPDTGLVSVMYVNNEIGVIQPIEQIGKLCKXRKVFFHVDAAQAVGKIAVDVNKLGIDLMSISAHKLYGPKGIGALYVRRrpRVRLEPIFSGGGQERGLRSGTLPAPLAVGFGAACAVAQTEMERDAAHVEXLMKRLVDGInANIPHATINGSMESRYAGNLNVSFAYVEGESLLMALK--DIAVSSGSACTSASLEPSYVLRALGVDEEMAHTSIRFGIGRFSTEAEVDYAIEVCIKHVDRLREMS 441
                 7*****************************9846******************99999976.57*****************96..5667899****************************************************************************************************************************9733599******************************************************99457*******************************9985..8**************************************************************998 PP

>> TIGR01979  sufS: cysteine desulfurase, SufS family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  175.0   0.1   1.7e-54   4.8e-52      15     364 ..      58     388 ..      46     438 .. 0.81

  Alignments for each domain:
  == domain 1    score: 175.0 bits;  conditional E-value: 1.7e-54
   TIGR01979  15 ngkplvYLDsaatsqkPkaVidaveeyyeksnanvhRgvhtlseeateayeeaRekvakfinAksaeeivftkgateslNlvaaslgesslkegdeivvseleHHanivpwqllakrkgaklkvieldedgtldleeleelltektklvaithvsNvlGtvnpveeiiklahevgalvlvDgaqavphlkvdvkeldvDflvfsgHKllgptGiGvLygkkelLeklpPfegGGemieevsleestyaelPlkfEaGtpniagvvglgaaieylekiglekieakekeltayalerle.eidglriygpkeeeeragiisfnvegvhahDvatlldeeGiavRsGhhCaqP 364
                 ++ + +YLDs at+     V+da++ y + +++n h  +h+   e+ ea+e+aR++va++++A+  +ei+ft+gates N+  + +++   ++ ++i+++++eH   + + + l ++ g ++ ++++++dg +d++el   ++  t lv+++ v N +G+++p+e+i kl + +++ + vD+aqav +  vdv++l++D + +s+HKl+gp GiG Ly+++    +l+P+  GG                   + +Gt +   +vg+gaa   + ++++e+ +a+++ l++ +++ ++ +i++ +i g++e+ + ag + ++++ v     + l+  + iav sG  C+  
  MMETSP1137-20121227|8198_1  58 REGRAIYLDSQATTPLDPRVLDAMMPYMTGMYGNPHSKTHAYGWETNEAVEKARDQVASLVGAE-GKEIIFTSGATESNNMAIKGVANFYXATKNHIITTQTEHKCVLXSCRYL-QQXGFDVTFLPVKQDGLVDVDELAAAMRPDTGLVSVMYVNNEIGVIQPIEQIGKLCKXRKVFFHVDAAQAVGKIAVDVNKLGIDLMSISAHKLYGPKGIGALYVRRRPRVRLEPIFSGGGQE--------------RGLRSGTLPAPLAVGFGAACA-VAQTEMERDAAHVEXLMKRLVDGINaNIPHATINGSMES-RYAGNLNVSFAYVEGE--SLLMALKDIAVSSGSACTSA 388
                 566789********9999*********************************************9.78****************************************9999887.568***************************************************************************************************************99999731..............123456666666777777765.566777777778888888887777535777777777663.4555544444444444..45666667777777777654 PP

>> TIGR01977  am_tr_V_EF2568: cysteine desulfurase family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  166.8   0.0   5.6e-52   1.5e-49       1     372 [.      63     429 ..      63     434 .. 0.87

  Alignments for each domain:
  == domain 1    score: 166.8 bits;  conditional E-value: 5.6e-52
   TIGR01977   1 iYldnAattypKpdeviealadllkeeggsagrgserlalrasreveetReelaklfnveekakvvFtnnattalNialkGilk....egkhvittslEHnaVlRpleklkeelgvevtivkaeeeglvdvekikkaikkdtklivlshaSNvtGtilpieeiaelakekgilflvDaaqtaGvleidveklaidllaftGHKgLlgpqGiggllikekik..lkpllsGGtGsnSasleqpselPdrfeaGtlNtlgiagLkagikfiekigianikkkelkltekllegLk.eikkvkiyGakdaakrvgv.vSltlegldseevaaildekfdivvRaGlHCaP..l....aHktigt...latGtiRlslgyfnteeeieklvea 372
                 iYld  att p  + v +a++ +++ + g++    ++   +++++ve +R+++a+l+ +e k +++Ft+ at++ N+a+kG+ +    +++h+itt  EH+ Vl   ++l++  g +vt+++++++glvdv++++ a++ dt l+ + ++ N  G+i+pie+i++l+k + ++f vDaaq +G + +dv+kl idl+ ++ HK L+gp+Gig+l+++ + +  l+p++sGG   +             + +Gtl  +  +g  a+   + ++++++++++   l+++l++g++ +i + +i G+++ +  +++ vS+     + e++   l    di+v +G  C+   l    + + +g    +a  +iR+++g f te+e+++++e+
  MMETSP1137-20121227|8198_1  63 IYLDSQATT-PLDPRVLDAMMPYMTGMYGNPHSKTHAYGWETNEAVEKARDQVASLVGAEGK-EIIFTSGATESNNMAIKGVANfyxaTKNHIITTQTEHKCVLXSCRYLQQX-GFDVTFLPVKQDGLVDVDELAAAMRPDTGLVSVMYVNNEIGVIQPIEQIGKLCKXRKVFFHVDAAQAVGKIAVDVNKLGIDLMSISAHK-LYGPKGIGALYVRRRPRvrLEPIFSGGGQER------------GLRSGTLPAPLAVGFGAAC-AVAQTEMERDAAHVEXLMKRLVDGINaNIPHATINGSMESRYAGNLnVSFAYV--EGESL---LMALKDIAVSSGSACTSasLepsyVLRALGVdeeMAHTSIRFGIGRFSTEAEVDYAIEV 429
                 7****9999.6667899999999999999******************************999.9*****************88777779********************9988.****************************************************************************************9.9***********98765559******95433............3679******999999987.588999******************97468899****99988777654666654..44443...444457999999999752231112345566422267899*****************997 PP

>> TIGR03392  FeS_syn_CsdA: cysteine desulfurase, catalytic subunit CsdA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  116.3   0.1   1.5e-36     4e-34      16     247 ..      61     291 ..      46     439 .. 0.85

  Alignments for each domain:
  == domain 1    score: 116.3 bits;  conditional E-value: 1.5e-36
   TIGR03392  16 ktvyldsaata.lkpqavieatqdfyrlesatvhrsqykealsltaryeaareqvaellnasdaenivwtrGtteslnlvaqsyarprlqpedeiivseaehhanlipwlmvaeqtGakvvklplgadklpdiellpelltkktrllalsqmsnvtGGapdlariialahkagavvvvdGaqGvvhlpadvqaldidfyafsghklygptGiGvlyGktelleampp.wqGGGk 247
                 +++ylds at+ l p  v++a+  + +   ++ h   ++   +  +  e+ar+qva+l+ a+  ++i++t G+tes n+ ++  a      ++ ii +++eh++ l       +q G  v  lp+ +d l d++ l+  + + t l+++  + n  G +  +++i +l++  ++   vd aq v ++ +dv++l id+ ++s+hklygp+GiG ly +      + p + GGG+
  MMETSP1137-20121227|8198_1  61 RAIYLDSQATTpLDP-RVLDAMMPYMTGMYGNPHSKTHAYGWETNEAVEKARDQVASLVGAE-GKEIIFTSGATESNNMAIKGVANFYXATKNHIITTQTEHKCVLXSCRY-LQQXGFDVTFLPVKQDGLVDVDELAAAMRPDTGLVSVMYVNNEIGVIQPIEQIGKLCKXRKVFFHVDAAQAVGKIAVDVNKLGIDLMSISAHKLYGPKGIGALYVRRRPRVRLEPiFSGGGQ 291
                 689****88762666.599****************************************986.689*************************************99987655.599*****************************************************************************************************987766665551556654 PP

>> TIGR01976  am_tr_V_VC1184: cysteine desulfurase family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  100.9   0.1   7.6e-32   2.1e-29      17     398 ..      60     427 ..      52     430 .. 0.85

  Alignments for each domain:
  == domain 1    score: 100.9 bits;  conditional E-value: 7.6e-32
   TIGR01976  17 edvvflDnpaGtqvPqsvldavsaaltrsnanrggayess.rkadqvvddAreavadllnaespeevvlGanatslafllsralartlg.pgdEvivtrldheaNispWlqaaedagakvkwaevdeadgeleeadlaallsdrTRLVAvtaasnllGsivdlaaltelvhaaGalvvvDavhyaphaliDvqalgaDllvcsaykffgPh.lGilvvraellkslkpsklefsedegperlElGtlqyellaGvvaavdylaelgaseegsrRerlvasfeaieayeerlaerllagLs.dlplvtvyglqdekleervptvaftvaklapervvkrlaeq.nvlvaaghfyavellrqLgle..aeeGvvrvglahYntaeevdkll 398
                  + ++lD+ a t +  +vlda+  ++t +  n   ++++   ++++ v++Ar++va l++ae   e+++   at+      +++a+ +  +++ +i t+ +h+    + +   ++ g +v +++v++ dg +++++laa + + T LV v +  n +G+i+ ++ + +l +     ++vDa ++     +Dv++lg Dl+ +sa+k +gP+ +G+l+vr+  + +l+p    fs  ++   l  Gtl   l  G+ aa   +a+ +              +e  +a+ e l++rl++g++ ++p +t+ g  + + +    +    v++ +     k +a + +   ++ ++  + +lr Lg++  + +  +r g+  ++t++evd  +
  MMETSP1137-20121227|8198_1  60 GRAIYLDSQATTPLDPRVLDAMMPYMTGMYGNPHSKTHAYgWETNEAVEKARDQVASLVGAEGK-EIIFTSGATESNNMAIKGVANFYXaTKNHIITTQTEHKCVLXSCR-YLQQXGFDVTFLPVKQ-DGLVDVDELAAAMRPDTGLVSVMYVNNEIGVIQPIEQIGKLCKXRKVFFHVDAAQAVGKIAVDVNKLGIDLMSISAHKLYGPKgIGALYVRRRPRVRLEPI---FSGGGQERGLRSGTLPAPLAVGFGAACA-VAQTE--------------MERDAAHVEXLMKRLVDGINaNIPHATINGSMESRYAGNLNVSFAYVEGESLLMALKDIAVSsGSACTSASLEPSYVLRALGVDeeMAHTSIRFGIGRFSTEAEVDYAI 427
                 369************************998888877777769*******************988.**********99999999999876156788999999999999988.6666**********99.**********************************************************************************77********999999986...66777888999******99999999875.33333..............6777899***********96379*******987777777665444555555555555555331334455566677899*****72245789**************9765 PP

>> TIGR03812  tyr_de_CO2_Arch: tyrosine decarboxylase MnfA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.7   0.1   2.5e-14   6.9e-12      63     192 ..     109     238 ..      89     257 .. 0.87

  Alignments for each domain:
  == domain 1    score: 42.7 bits;  conditional E-value: 2.5e-14
   TIGR03812  63 evvellgellhlkealGyivsGGteanilalraaknlakeekkekpeiivPesahfsfekaaell...glelvkaeldeeykvdvkkveeliedntiglvgiaGttelGlvDdieelskiakendlylhvDaa 192
                 ++ +++++l+ ++      +sG te+n +a++ + n + ++k+   +ii  ++ h      +  l   g ++   +++++  vdv+++++++   t  +  +  + e+G++ +ie+++k+ k  ++++hvDaa
  MMETSP1137-20121227|8198_1 109 KARDQVASLVGAEGKEIIFTSGATESNNMAIKGVANFYXATKN---HIITTQTEHKCVLXSCRYLqqxGFDVTFLPVKQDGLVDVDELAAAMRPDTGLVSVMYVNNEIGVIQPIEQIGKLCKXRKVFFHVDAA 238
                 55567888999998888999********************997...9********9887766555222789999******************99886666667899**************************8 PP

>> TIGR03301  PhnW-AepZ: 2-aminoethylphosphonate aminotransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.3   0.0   3.1e-12   8.5e-10      98     196 ..     175     270 ..     163     278 .. 0.83

  Alignments for each domain:
  == domain 1    score: 36.3 bits;  conditional E-value: 3.1e-12
   TIGR03301  98 lphtalkfseeeevdlseieelLaedpdithvavvHhEtttgiLnpleaiakvarshgavlivDavSslgaipidieeldvdaliasanKclegvpGls 196
                  ++t l ++++  vd++e++++++ d+ + +v+ v  E   g++ p+e+i+k+++ + + + vDa  ++g i++d+++l++d +  sa K l g  G++
  MMETSP1137-20121227|8198_1 175 FDVTFLPVKQDGLVDVDELAAAMRPDTGLVSVMYVNNE--IGVIQPIEQIGKLCKXRKVFFHVDAAQAVGKIAVDVNKLGIDLMSISAHK-LYGPKGIG 270
                 44555666777889999999999999999999999888..59**********************************************99.55555555 PP

>> TIGR02326  transamin_PhnW: 2-aminoethylphosphonate--pyruvate transaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.0   0.1   6.6e-12   1.8e-09      32     202 ..     102     272 ..      94     281 .. 0.80

  Alignments for each domain:
  == domain 1    score: 35.0 bits;  conditional E-value: 6.6e-12
   TIGR02326  32 dynevvekirqkllklataeeeytsvllqGsGtfaveaviGsavp.kdgkllvvinGayGkrlaqiaelleipvvvveteekeatnvaevekilaa.dpeithvalvhsetttGilnPieavakvakryGkvlivdamssfGgieidiaeleidylissankciqGvPGfgfv 202
                 + ne vek r ++ +l++ae++   +   G+      a+ G a     +k  +++  +  k +   + +l+    +v++  +++  +++v+++ aa  p+   v++++ +   G++ Pie++ k+ k       vda  ++G i +d+++l id +  sa k + G  G+g +
  MMETSP1137-20121227|8198_1 102 ETNEAVEKARDQVASLVGAEGKE-IIFTSGATESNNMAIKGVANFyXATKNHIITTQTEHKCVLXSCRYLQQXGFDVTFLPVKQDGLVDVDELAAAmRPDTGLVSVMYVNNEIGVIQPIEQIGKLCKXRKVFFHVDAAQAVGKIAVDVNKLGIDLMSISAHK-LYGPKGIGAL 272
                 56889999999999999998763.333444433333344444332356666777777888999999************************998765278899999*************************************************99988888.5566666655 PP

>> TIGR02539  SepCysS: Sep-tRNA:Cys-tRNA synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.1   0.0   6.4e-09   1.7e-06     136     210 ..     190     264 ..     171     277 .. 0.88
   2 ?   -2.3   0.0       1.3   3.6e+02     146     230 ..     325     410 ..     313     424 .. 0.62

  Alignments for each domain:
  == domain 1    score: 25.1 bits;  conditional E-value: 6.4e-09
   TIGR02539 136 ieevedesgkevalallthvdgeyGnladakkvakvcrkkgvplllncaytvGrlpvsakevkadfivgsGhksm 210
                 ++e+      ++ l+ + +v+ e G ++  ++++k+c+ ++v + +++a +vG++ v+ ++++ d++  s hk  
  MMETSP1137-20121227|8198_1 190 VDELAAAMRPDTGLVSVMYVNNEIGVIQPIEQIGKLCKXRKVFFHVDAAQAVGKIAVDVNKLGIDLMSISAHKLY 264
                 56777777778899**********************************************************954 PP

  == domain 2    score: -2.3 bits;  conditional E-value: 1.3
   TIGR02539 146 evalallthvdgeyGnladakkvakvcrkkgvplllncaytvGrlpvsakevkadfivgsGhksmaas.apvGv...lalkeeyedkvl 230
                 +v+  +   vdg   n++ a   +++  ++   l +  ay  G   +       d  v+sG    +as  p  v   l++ ee +++ +
  MMETSP1137-20121227|8198_1 325 HVEXLMKRLVDGINANIPHATINGSMESRYAGNLNVSFAYVEGESLLM---ALKDIAVSSGSACTSASlEPSYVlraLGVDEEMAHTSI 410
                 555555666788888888888888887777777777788887764333...33466677776665555234443111567777766655 PP

>> TIGR01325  O_suc_HS_sulf: O-succinylhomoserine sulfhydrylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0   2.3e-06   0.00063      44     202 ..      95     264 ..      90     273 .. 0.80

  Alignments for each domain:
  == domain 1    score: 16.3 bits;  conditional E-value: 2.3e-06
   TIGR01325  44 kgfvysryanPtvkvfeerlalleGae......aavatasGmaailaallallsaGdhvvasrslfGstvvlvseilkrfGvevsfvdat.....dlkaWeaalkantkllfletPsnPlaelvdiaalaelahavGaklvvdnvfat.PvlqqplklGadvvvysatkai 202
                 k + y   +n +v+   +++a l Gae      ++ at s   ai+     +  + +h++++++    +v    ++l++ G +v+f + +     d+++  aa++++t l+ +    n +  +  i+ +  l         vd + a   +     klG+d++  sa k  
  MMETSP1137-20121227|8198_1  95 KTHAYGWETNEAVEKARDQVASLVGAEgkeiifTSGATESNNMAIKGVANFYXATKNHIITTQTEH-KCVLXSCRYLQQXGFDVTFLPVKqdglvDVDELAAAMRPDTGLVSVMYVNNEIGVIQPIEQIGKLCKXRKVFFHVDAAQAVgKIAVDVNKLGIDLMSISAHKLY 264
                 56778889999999999*****99998433222234666667788877777777788888888765.67778889***********86533344499**********************************************987751566777899***9999999865 PP

>> TIGR03799  NOD_PanD_pyr: putative pyridoxal-dependent aspartate 1-decarboxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   3.6e-06   0.00098     275     343 ..     210     271 ..     143     282 .. 0.79

  Alignments for each domain:
  == domain 1    score: 15.4 bits;  conditional E-value: 3.6e-06
   TIGR03799 275 ttetGnvdPldeladiaqeldchfhvdaawGGatllsekyrkllkGieradsvtidahkqlyvPmGaGl 343
                   e G + P++++ ++++  +++fhvdaa     +  + ++    Gi   d ++i ahk ly P G G 
  MMETSP1137-20121227|8198_1 210 NNEIGVIQPIEQIGKLCKXRKVFFHVDAAQAVGKIAVDVNKL---GI---DLMSISAHK-LYGPKGIGA 271
                 4699*************************8877766665553...66...456788887.788888775 PP

>> TIGR01326  OAH_OAS_sulfhy: O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.2   1.4e-05    0.0039      57     210 ..     105     269 ..      94     274 .. 0.75

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 1.4e-05
   TIGR01326  57 Pttdvlekriaaleg..GvaalavasGqaaillallnlae....aGdnivsssklYGGtynlfkvtlkrlGievrf..vdkd...dleelekaidentkavfletignPkldvlDiekvaevakkagvplivDntvatp.ylvrPlehGadivvhsatkylgGhgt 210
                  +++   +++a+l g  G   ++++  + +  +a+  +a+    + ++i+++++ +          l++ G +v+f  v++d   d++el++a+++ t  v +  + n    +  ie++ ++ k  +v   vD + a + + v   + G+d++  sa k +g +g+
  MMETSP1137-20121227|8198_1 105 EAVEKARDQVASLVGaeGKEIIFTSGATESNNMAIKGVANfyxaTKNHIITTQTEHKCVL-XSCRYLQQXGFDVTFlpVKQDglvDVDELAAAMRPDTGLVSVMYVNNEIGVIQPIEQIGKLCKXRKVFFHVDAAQAVGkIAVDVNKLGIDLMSISAHKLYGPKGI 269
                 444455567777766324444555555567778887776433324455666655554444.444569999****99444566443589*************************************************99677888899***********9998875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (461 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       137  (0.0333983); expected 82.0 (0.02)
Passed bias filter:                      103  (0.0251097); expected 82.0 (0.02)
Passed Vit filter:                        21  (0.00511945); expected 4.1 (0.001)
Passed Fwd filter:                        15  (0.00365675); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.56u 0.17s 00:00:00.73 Elapsed: 00:00:00.63
# Mc/sec: 965.83
//
Query:       MMETSP1137-20121227|8199_1  [L=317]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (317 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       106  (0.0258411); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.16s 00:00:00.42 Elapsed: 00:00:00.51
# Mc/sec: 820.40
//
Query:       MMETSP1137-20121227|8200_1  [L=110]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (110 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        96  (0.0234032); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.17s 00:00:00.32 Elapsed: 00:00:00.26
# Mc/sec: 558.42
//
Query:       MMETSP1137-20121227|8201_1  [L=496]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (496 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        90  (0.0219405); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.16s 00:00:00.50 Elapsed: 00:00:00.49
# Mc/sec: 1336.05
//
Query:       MMETSP1137-20121227|8202_1  [L=119]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00064   17.8   5.4     0.0011   17.1   3.7    1.5  1  TIGR01031 rpmF_bact: ribosomal protein L32


Domain annotation for each model (and alignments):
>> TIGR01031  rpmF_bact: ribosomal protein L32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   3.7   2.6e-07    0.0011       1      24 [.      59      81 ..      59      93 .. 0.87

  Alignments for each domain:
  == domain 1    score: 17.1 bits;  conditional E-value: 2.6e-07
   TIGR01031  1 AVPkrktSksrkrkRRshdaklka 24
                AVPk+++Sk ++r+R+++ + +ka
  MMETSP1137-20121227|8202_1 59 AVPKKRQSKMKTRQRKAN-WFAKA 81
                9****************9.63555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (119 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       164  (0.0399805); expected 82.0 (0.02)
Passed bias filter:                      110  (0.0268162); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.16u 0.13s 00:00:00.29 Elapsed: 00:00:00.30
# Mc/sec: 523.56
//
Query:       MMETSP1137-20121227|8203_1  [L=563]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (563 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        87  (0.0212092); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.17s 00:00:00.52 Elapsed: 00:00:00.43
# Mc/sec: 1728.14
//
Query:       MMETSP1137-20121227|8204_1  [L=480]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.6e-12   45.6   7.3    1.6e-12   45.6   5.0    3.5  4  TIGR00880 2_A_01_02: multidrug resistance protein
      7e-07   26.3  16.6    4.9e-05   20.2   2.2    2.2  2  TIGR00890 2A0111: oxalate/formate antiporter
    7.8e-06   23.3  25.9    6.3e-05   20.3  16.1    2.8  2  TIGR00900 2A0121: H+ Antiporter protein
    9.5e-05   19.4   3.9    9.5e-05   19.4   2.7    2.2  2  TIGR00881 2A0104: phosphoglycerate transporter family protein
    0.00024   18.1   2.6    0.00024   18.1   1.8    2.9  2  TIGR00896 CynX: cyanate transporter
     0.0027   14.5  17.8     0.0094   12.7   3.0    2.9  2  TIGR00893 2A0114: D-galactonate transporter
  ------ inclusion threshold ------
       0.14    8.5   4.6       0.48    6.7   0.4    2.4  2  TIGR00894 2A0114euk: Na(+)-dependent inorganic phosphate cotransporter
       0.47    7.1   8.5       0.11    9.2   1.5    2.5  2  TIGR00882 2A0105: oligosaccharide:H+ symporter


Domain annotation for each model (and alignments):
>> TIGR00880  2_A_01_02: multidrug resistance protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.1         1   5.3e+02      24      61 ..      20      57 ..      18      71 .. 0.58
   2 !   45.6   5.0   3.2e-15   1.6e-12       9     130 ..      70     198 ..      62     210 .. 0.89
   3 ?   -1.9   0.1       1.4   6.9e+02     112     138 ..     228     254 ..     199     257 .. 0.65
   4 ?    4.4   7.7     0.015       7.9      23     128 ..     301     421 ..     279     433 .. 0.58

  Alignments for each domain:
  == domain 1    score: -1.5 bits;  conditional E-value: 1
   TIGR00880 24 rvGrkpvllvglfifvlsqllfalssnitvliiarilq 61
                r G+ +v ++ l+  ++    + ++  + +l+++r ++
  MMETSP1137-20121227|8204_1 20 RGGKLSVFCCCLACALADLSYALFAPFFPSLAVSRGVS 57
                55666666666665555555555667777777777443 PP

  == domain 2    score: 45.6 bits;  conditional E-value: 3.2e-15
   TIGR00880   9 lgqlvvsplsglltdrvGrkpvllvglfifvlsqllfals.......snitvliiarilqGfgaaaalvagaaliadiikeeersvalgllsagialgpilGpllGavlaqalgwralflilallalla 130
                 l+ l++ pl+  l++  G   vllvg++i+++s l+fa+        +     +++r +qG ++a++ +a+++l+ ++++e++++ a+g   a+  lg + Gp+lG++l+q  g++a+fl+++  +ll 
  MMETSP1137-20121227|8204_1  70 LVMLMLTPLAPRLIQYAGCNRVLLVGMLIQSISVLAFAFIerleeplHFTIAALLLRSVQGGASAFFETAAGSLVMRAVPENMVGDAIGWTEAARGLGSLGGPPLGGLLFQTAGFEAPFLAAGGAMLLM 198
                 6778899********************************99998887666667789****************************************************************997666553 PP

  == domain 3    score: -1.9 bits;  conditional E-value: 1.4
   TIGR00880 112 qalgwralflilallallafilllfll 138
                 +a++  +  l +  +a+ afi+++fl+
  MMETSP1137-20121227|8204_1 228 KASSSPWRMLQMPPIAAGAFICTCFLI 254
                 445555555666777888888888876 PP

  == domain 4    score: 4.4 bits;  conditional E-value: 0.015
   TIGR00880  23 drvGrkpvllvglfifvlsqllfals.........snitvliiarilqGfgaaaalv.agaaliadiikee....ersvalgllsag.ialgpilGpllGavlaqalgwralflilallal 128
                 +r+G    l +g+++  l+ +++            +++ + + a +++G+ga+   v +++ ++a + +++    e s al+ ++ + + +g+  Gp +G+vl+q+ g+ +   il++ +l
  MMETSP1137-20121227|8204_1 301 SRLGSLLQLNLGIALTGLGYIALGPIpllphgerfQSVPQVAAAMTVIGLGAGLGYVpMTNLMLAAARSTGrrvdEISDALSAIVNFsFCVGAAAGPWIGGVLVQFAGFDWASSILGMCML 421
                 55555555555555555555443333444555555555566666677777777654414444444433333111355666655544415678889999999999****9999999887765 PP

>> TIGR00890  2A0111: oxalate/formate antiporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.7   3.9   3.7e-05     0.019     262     373 ..      81     197 ..      26     204 .. 0.78
   2 !   20.2   2.2   9.6e-08   4.9e-05       6     171 ..     244     425 ..     240     452 .. 0.73

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 3.7e-05
   TIGR00890 262 avsDkigrlktmsivlsisavlllslllikkisdvlflAl.valvaftiGgtfslfp....slvskifgkknsaanyGllytakavagilggliaslvlteiGfeatllvtaalall 373
                  +  + g  +++ +++ i  +++l++++i+ + + l++ +  +l  +  Gg  + f     slv +   ++ ++   G + +a +++++ g  +++l++   Gfea +l ++  +ll
  MMETSP1137-20121227|8204_1  81 RLIQYAGCNRVLLVGMLIQSISVLAFAFIERLEEPLHFTIaALLLRSVQGGASAFFEtaagSLVMRAVPENMVGDAIGWTEAARGLGSLGGPPLGGLLFQTAGFEAPFLAAGGAMLL 197
                 5556788899999********************66655440445667778888888633336778888899999999*******************************999877764 PP

  == domain 2    score: 20.2 bits;  conditional E-value: 9.6e-08
   TIGR00890   6 lvgtvimalvsgivYtwtllapalgrklrvkvtavaiaftlllivlalsqvvgGkladkfGpravallggillgiGfifaa.........ladslallyltyglasvgegivYgialst...av....kWfpdkrGLasgiiiggyGlGslilsplitsvielegveaafivmgivallliv 171
                 + +++ +++ + i +    l+p +++ ++++ ++v + f++l++   l + v+G+ a + G+ +   lg +l+g+G+i  +           +s++ + +++++ ++g g  Y  + ++   a     +   +     s+i+  ++ +G+++   +   +++  g+  a  ++g+ +l l  
  MMETSP1137-20121227|8204_1 244 AGAFICTCFLIAISFLDPSLQPEMKARFGMGPAQVGLLFGTLILAYILLSLVAGATASRLGSLLQLNLGIALTGLGYIALGpipllphgeRFQSVPQVAAAMTVIGLGAGLGYVPMTNLmlaAArstgRRVDEISDALSAIVNFSFCVGAAAGPWIGGVLVQFAGFDWASSILGMCMLSLPA 425
                 578999***********************************************************************877622222211134689999999999999999999643322111221111344444555566666677666666666666666666666666666666665555 PP

>> TIGR00900  2A0121: H+ Antiporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3  16.1   1.2e-07   6.3e-05      37     347 ..      62     384 ..      31     400 .. 0.76
   2 ?    3.1   0.2     0.021        11     131     159 ..     384     412 ..     372     434 .. 0.78

  Alignments for each domain:
  == domain 1    score: 20.3 bits;  conditional E-value: 1.2e-07
   TIGR00900  37 slaalagllplvvvspiaGvlvDRldrkkvmvgaDliravlvavlpfvallgleiwmvlvvalilsi...aqafftpatsailPdlvpeeeltranslsqlvrslieivgPgiggllvatlgikaailvdavgflisallivsvripkkaaseeeelse.avlrdileGlkfvlknklLrtllllallfnlvfapiisvllpyvtskv...lrrssvevgvvlaafglGallGalllgllgkylkraalitiavlvig...lailvlgllnp.n....lllllvlaaaiGvvvglinviigtllqrsvpaellgRVfglqeslssa 347
                 + + +  +l++++++p a  l+ ++   +v+    li+ ++v+++ f+  l+ ++   ++++l++s+   a+aff +a  +++ ++vpe+    a++  +++r l ++ gP +ggll +t g++a +l+   + l+  ++ +++ + k     +  l++ +  +   +  +  ++   +  +++ a++ +    +i   l p  + ++   ++ ++ +vg++   + l+ +l +l+ g ++ +l  ++ +++++ + g   +a+++++ll+       ++ +++++ +iG++ gl  v+++ l+  ++ +  + RV  + ++ls +
  MMETSP1137-20121227|8204_1  62 GAVFAQPMLVMLMLTPLAPRLIQYAGCNRVLLVGMLIQSISVLAFAFIERLEEPLHFTIAALLLRSVqggASAFFETAAGSLVMRAVPENMVGDAIGWTEAARGLGSLGGPPLGGLLFQTAGFEAPFLAAGGAMLLMNGVQLVIALSKTST-SAALLPPaDASATASKASSSPWRMLQMPPIAAGAFICTCFLIAIS-FLDPSLQPEMkarFGMGPAQVGLLFGTLILAYILLSLVAGATASRLGSLLQLNLGIALTGlgyIALGPIPLLPHgErfqsVPQVAAAMTVIGLGAGLGYVPMTNLMLAAARSTGR-RVDEISDALSAI 384
                 4445567999***************99888888889999999999999988767777777777776644489*****************************************************99888777777666666666666665.333344344444444444444444444444455555444333333.5666665554445*************************************9999988876333689999999987687888999*******************999877766544.666666666655 PP

  == domain 2    score: 3.1 bits;  conditional E-value: 0.021
   TIGR00900 131 lsqlvrslieivgPgiggllvatlgikaa 159
                 +++  + +    gP igg+lv++ g+ +a
  MMETSP1137-20121227|8204_1 384 IVNFSFCVGAAAGPWIGGVLVQFAGFDWA 412
                 45556667778899999999999999997 PP

>> TIGR00881  2A0104: phosphoglycerate transporter family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   2.5     0.023        12      62     184 ..      91     221 ..      43     238 .. 0.78
   2 !   19.4   2.7   1.9e-07   9.5e-05      17     145 ..     263     406 ..     247     452 .. 0.81

  Alignments for each domain:
  == domain 1    score: 2.6 bits;  conditional E-value: 0.023
   TIGR00881  62 flaigLilvaivnlflgfss......slwvli.allalnGlfqglgwppcgrlltkwfsrserGtvvaiwnishnvggallpplvllaialllswhvvfivpgiiaiivslilllllrdspqs.vglpkle 184
                 +l++g++  +i  l ++f +      ++++ + +l+ ++G + ++    +g+l+ + ++++  G +++    +  +g    ppl  l ++    +   ++  g++ ++ ++ l++ l+++  s   lp+++
  MMETSP1137-20121227|8204_1  91 VLLVGMLIQSISVLAFAFIErleeplHFTIAAlLLRSVQGGASAFFETAAGSLVMRAVPENMVGDAIGWTEAARGLGSLGGPPLGGLLFQTAGFEAPFLAAGGAMLLMNGVQLVIALSKTSTSaALLPPAD 221
                 5677888899*********98887664444331345667777777788999*******************************9999999888877777777777666667655555555444404455555 PP

  == domain 2    score: 19.4 bits;  conditional E-value: 1.9e-07
   TIGR00881  17 alpelqeeiglsktdlGlllsafsiaYgiskfvvgvvsDrvsarvflaigLilvaivnlflgfss.........slwvliallalnGlfqglgwppcgrlltkwfsrser......Gtvvaiwnishnvggallpplvllaial 145
                 ++pe+++ +g+  +++Gll+    +aY +  +v g  + r ++   l +g+ l+++  + lg  +         s+++ +a++ + Gl  glg +p + l+ +    + r        + ai n s  vg a  p +  + +++
  MMETSP1137-20121227|8204_1 263 LQPEMKARFGMGPAQVGLLFGTLILAYILLSLVAGATASRLGSLLQLNLGIALTGLGYIALGPIPllphgerfqSVPQVAAAMTVIGLGAGLGYVPMTNLMLAAARSTGRrvdeisDALSAIVNFSFCVGAAAGPWIGGVLVQF 406
                 689*************************************************************9****************************999888776554443331222212455777888888877777655555554 PP

>> TIGR00896  CynX: cyanate transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   1.8   4.6e-07   0.00024      20      81 ..      44     105 ..      31     183 .. 0.85
   2 ?    1.8   7.1     0.044        23     225     350 ..     269     408 ..     263     414 .. 0.63

  Alignments for each domain:
  == domain 1    score: 18.1 bits;  conditional E-value: 4.6e-07
   TIGR00896  20 gplleevrsalglsasaaglLtalPvlalavlallapklarrlgeersvlagllliaaGili 81 
                 +p ++++  + g+s +a g + a P+l + +l++lap+l +  g +r++l+g+l+  + +l 
  MMETSP1137-20121227|8204_1  44 APFFPSLAVSRGVSHAAVGAVFAQPMLVMLMLTPLAPRLIQYAGCNRVLLVGMLIQSISVLA 105
                 7889999999999***************************************9998887764 PP

  == domain 2    score: 1.8 bits;  conditional E-value: 0.044
   TIGR00896 225 iesGvsaataGlllallqlaqlasalliPllasrvkdqrkivvvvavltl....vGlv.....GllfapvdallaWalvlGlgqG.gafsLa.Ltliglrsrs...aaqaakLsamaqsiGyllaalgPllvGvlydasg 350
                    G+  a+ Gll++ l+la ++ +l++ + asr+    ++ + +a+  l     G +     G  f  v  + a + v+Glg G g ++++ L+l+  rs+     ++  +Lsa+      + aa gP++ Gvl + +g
  MMETSP1137-20121227|8204_1 269 ARFGMGPAQVGLLFGTLILAYILLSLVAGATASRLGSLLQLNLGIALTGLgyiaLGPIpllphGERFQSVPQVAAAMTVIGLGAGlGYVPMTnLMLAAARSTGrrvDEISDALSAIVNFSFCVGAAAGPWIGGVLVQFAG 408
                 56688889999999999999999999999999999544333333332222000023221122244466677778889999999994455665266777777531113456677777654444558999*****9998765 PP

>> TIGR00893  2A0114: D-galactonate transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.7   3.0   1.8e-05    0.0094      25     179 ..      55     217 ..      42     232 .. 0.85
   2 !    6.2   3.8    0.0018       0.9      17      93 ..     264     349 ..     252     423 .. 0.70

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 1.8e-05
   TIGR00893  25 glsaaqyglvfsafsigyvlfqlpggllldriGakktlavaivlWglftllqafat.......alvslivlRvllGlaEaplfPgiikivasWFPakeratavsifnsaqalgaiiggplvgwilvefsWqlvFiieGvlaiil.gvlilkvikdkpekakvl 179
                 g+s a++g vf+  ++ ++++  ++  l++  G   +l v +++ ++  l+ af+         +++ ++lR + G a a +  +   +v    P++  + a++ + +a +lg++ g+pl g++ ++ ++++ F+  G   +++ gv +++ + +   +a++l
  MMETSP1137-20121227|8204_1  55 GVSHAAVGAVFAQPMLVMLMLTPLAPRLIQYAGCNRVLLVGMLIQSISVLAFAFIErleeplhFTIAALLLRSVQGGASAFFETAAGSLVMRAVPENMVGDAIGWTEAARGLGSLGGPPLGGLLFQTAGFEAPFLAAGGAMLLMnGVQLVIALSKTSTSAALL 217
                 7899999999999999999************************************999977665555667888899999999999999999999*****************************************9999888873555555555555555555 PP

  == domain 2    score: 6.2 bits;  conditional E-value: 0.0018
   TIGR00893  17 avtlkedLglsaaqyglvfsafsigyvlfqlpggllldriGakktlavaivlWglftllqafat.........alvslivlRvllG 93 
                 ++++k  +g+  aq+gl f    ++y+l+ l++g+   r+G+ + l + i l gl  ++ + +          ++++ +++ +++G
  MMETSP1137-20121227|8204_1 264 QPEMKARFGMGPAQVGLLFGTLILAYILLSLVAGATASRLGSLLQLNLGIALTGLGYIALGPIPllphgerfqSVPQVAAAMTVIG 349
                 7899999**********************************988888777777776666664445555555555555555555555 PP

>> TIGR00894  2A0114euk: Na(+)-dependent inorganic phosphate cotransporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   0.4   0.00095      0.48     132     201 ..     119     188 ..      57     205 .. 0.78
   2 ?    3.3   0.1      0.01       5.3      66     117 ..     266     317 ..     255     423 .. 0.78

  Alignments for each domain:
  == domain 1    score: 6.7 bits;  conditional E-value: 0.00095
   TIGR00894 132 al.vivlRvlqGlaeglvspaqhellakWiPPkERsrlvsavlsGaqlGtlivlpisGlicesdlgWpavf 201
                 ++  ++lR +qG a +   +a  +l+ + +P +  + +++ + + + lG l   p++Gl+ +   g++a f
  MMETSP1137-20121227|8204_1 119 TIaALLLRSVQGGASAFFETAAGSLVMRAVPENMVGDAIGWTEAARGLGSLGGPPLGGLLFQT-AGFEAPF 188
                 3335789*****************************************************999.5888766 PP

  == domain 2    score: 3.3 bits;  conditional E-value: 0.01
   TIGR00894  66 iknkefaWseklqGlilssvfygslilqipvGylakkygtkkvigaalllss 117
                 + +  f   +++ Gl+++++ +++++l +  G  a ++g+ + +  +++l+ 
  MMETSP1137-20121227|8204_1 266 EMKARFGMGPAQVGLLFGTLILAYILLSLVAGATASRLGSLLQLNLGIALTG 317
                 5677788889999**************************9998887777654 PP

>> TIGR00882  2A0105: oligosaccharide:H+ symporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   1.5   0.00022      0.11     222     306 ..      26     111 ..      13     207 .. 0.83
   2 ?   -0.1   0.4      0.15        75      29      68 ..     267     306 ..     242     432 .. 0.71

  Alignments for each domain:
  == domain 1    score: 9.2 bits;  conditional E-value: 0.00022
   TIGR00882 222 lyvvGvasvy.dvfdqqfavffkslfetpeeGtrvfGyvttagellnalimfiapliinriGaknalliagvimavrilgssfatt 306
                 ++    a+   d+    fa ff sl  +  +   + G v +   l+  ++  +ap +i   G    ll++ +i ++ +l+ +f   
  MMETSP1137-20121227|8204_1  26 VFCCCLACALaDLSYALFAPFFPSLAVSRGVSHAAVGAVFAQPMLVMLMLTPLAPRLIQYAGCNRVLLVGMLIQSISVLAFAFIER 111
                 55566666441555556999999999999999999999999999999999999***********************9999988754 PP

  == domain 2    score: -0.1 bits;  conditional E-value: 0.15
   TIGR00882  29 lkdvlglsktetGivfsvislfsilfqplfGlisdklGlk 68 
                 +k   g+  +++G++f ++ l+ il+  + G    +lG  
  MMETSP1137-20121227|8204_1 267 MKARFGMGPAQVGLLFGTLILAYILLSLVAGATASRLGSL 306
                 5566677778888899988888888888888888888843 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (480 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       153  (0.0372989); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         8  (0.00195027); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.51u 0.15s 00:00:00.66 Elapsed: 00:00:00.98
# Mc/sec: 646.48
//
Query:       MMETSP1137-20121227|8205_1  [L=304]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (304 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        85  (0.0207216); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.17s 00:00:00.42 Elapsed: 00:00:00.44
# Mc/sec: 911.92
//
Query:       MMETSP1137-20121227|8206_1  [L=411]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (411 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        88  (0.0214529); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.16s 00:00:00.46 Elapsed: 00:00:00.70
# Mc/sec: 774.96
//
Query:       MMETSP1137-20121227|8208_1  [L=392]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (392 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        75  (0.0182838); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.18s 00:00:00.45 Elapsed: 00:00:01.33
# Mc/sec: 389.02
//
Query:       MMETSP1137-20121227|8209_1  [L=374]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (374 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        62  (0.0151146); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.17s 00:00:00.45 Elapsed: 00:00:00.71
# Mc/sec: 695.27
//
Query:       MMETSP1137-20121227|8210_1  [L=452]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.7e-12   42.1   0.0    5.7e-12   42.1   0.0    1.5  2  TIGR03903 TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
    4.2e-05   20.9   0.0    7.1e-05   20.2   0.0    1.4  1  TIGR03724 arch_bud32: Kae1-associated kinase Bud32


Domain annotation for each model (and alignments):
>> TIGR03903  TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.1   0.0   2.8e-15   5.7e-12       1     192 [.      60     247 ..      60     276 .. 0.81
   2 ?   -5.8   2.2       0.8   1.6e+03    1233    1254 ..     361     382 ..     351     406 .. 0.55

  Alignments for each domain:
  == domain 1    score: 42.1 bits;  conditional E-value: 2.8e-15
   TIGR03903   1 etghkvaikllRedaaeeerlvaRFrReialCarLshPnivaLlD..sGea.....edgllFavFeyveGrtlrevLaadGaLpaaetgrLmlqvLDalaaahdaGvvhRDLkPqnimvsaadveshakvLDFGigaLlpgvedadeatltrttevlGsPaYaaPeqLRgepv.taksDlYaWGLivleCLtGkrvvqGa 192
                 etg+ va+k +R d  e+e       Rei++ + L+h niv+L +    +a     + g ++ v e+ e   l  +  a    ++a+    m q L+++a  h++ v+hRD+k  n+++  +++    k+ DFG++     +e+    +l   t+ + +  Y  Pe L g +   +  D+++ G i+ e L  k+++ G 
  MMETSP1137-20121227|8210_1  60 ETGEIVALKRVRMD-NEKEGFPITAIREIKILKILNHKNIVRLKEivTSKAteynqGKGSIYMVMEFCE-HDLTGLTDAGQRFTTAQIKCYMKQLLEGMAYCHKNRVLHRDIKGSNLLINDEGQ---LKLADFGLAR---PFEE----QLRPYTNRVITLWYRPPELLLGASLyGPTIDMWSVGCIFAELLLRKPILPGR 247
                 69999*********.666777777889***************954223333122225789*******98.5688888888899999*********************************87765...6788***864...4555....6777778888999*****999987537999***********99999998886 PP

  == domain 2    score: -5.8 bits;  conditional E-value: 0.8
   TIGR03903 1233 ravaaeallrravevareagkk 1254
                     aa+++ ++a+++a++++++
  MMETSP1137-20121227|8210_1  361 HLAAAQQAQAQAAQLAQQQATH 382 
                  2334444444444444444332 PP

>> TIGR03724  arch_bud32: Kae1-associated kinase Bud32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   0.0   3.5e-08   7.1e-05      94     137 ..     147     191 ..      97     204 .. 0.85

  Alignments for each domain:
  == domain 1    score: 20.2 bits;  conditional E-value: 3.5e-08
   TIGR03724  94 ellkevGelvgklHkagivhgDlttsNiivk.ddklyliDfGLgk 137
                  ++k++ e ++ +Hk++++h D+  sN++++ +++l l DfGL++
  MMETSP1137-20121227|8210_1 147 CYMKQLLEGMAYCHKNRVLHRDIKGSNLLINdEGQLKLADFGLAR 191
                 6888999999*******************96378999******97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (452 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       186  (0.0453437); expected 82.0 (0.02)
Passed bias filter:                       96  (0.0234032); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.37u 0.16s 00:00:00.53 Elapsed: 00:00:00.48
# Mc/sec: 1242.90
//
Query:       MMETSP1137-20121227|8211_1  [L=50]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (50 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        85  (0.0207216); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.18s 00:00:00.30 Elapsed: 00:00:00.32
# Mc/sec: 206.23
//
Query:       MMETSP1137-20121227|8212_1  [L=209]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (209 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       359  (0.0875183); expected 82.0 (0.02)
Passed bias filter:                      180  (0.043881); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.14s 00:00:00.38 Elapsed: 00:00:00.46
# Mc/sec: 599.69
//
Query:       MMETSP1137-20121227|8213_1  [L=424]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (424 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       103  (0.0251097); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.12s 00:00:00.42 Elapsed: 00:00:00.44
# Mc/sec: 1271.89
//
Query:       MMETSP1137-20121227|8214_1  [L=83]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (83 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        45  (0.0109703); expected 82.0 (0.02)
Passed bias filter:                       40  (0.00975134); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:00.28
# Mc/sec: 391.25
//
Query:       MMETSP1137-20121227|8215_1  [L=212]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (212 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       204  (0.0497318); expected 82.0 (0.02)
Passed bias filter:                      102  (0.0248659); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.15s 00:00:00.34 Elapsed: 00:00:00.34
# Mc/sec: 822.99
//
Query:       MMETSP1137-20121227|8216_1  [L=389]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (389 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       127  (0.0309605); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.16s 00:00:00.46 Elapsed: 00:00:00.32
# Mc/sec: 1604.49
//
Query:       MMETSP1137-20121227|8217_1  [L=222]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (222 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        57  (0.0138957); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.15s 00:00:00.35 Elapsed: 00:00:00.33
# Mc/sec: 887.93
//
Query:       MMETSP1137-20121227|8218_1  [L=86]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (86 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        22  (0.00536324); expected 82.0 (0.02)
Passed bias filter:                       22  (0.00536324); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.15s 00:00:00.28 Elapsed: 00:00:00.23
# Mc/sec: 493.52
//
Query:       MMETSP1137-20121227|8219_1  [L=145]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.011   12.9   7.1      0.013   12.8   4.9    1.0  1  TIGR00687 pyridox_kin: pyridoxal kinase
      0.019   11.6   3.2      0.024   11.3   2.2    1.1  1  TIGR03998 thiol_BshC: bacillithiol biosynthesis cysteine-adding enzyme BshC
      0.037   11.5   2.6      0.048   11.1   1.8    1.2  1  TIGR02135 phoU_full: phosphate transport system regulatory protein PhoU
      0.081   11.2  12.9      0.034   12.5   2.6    2.2  2  TIGR01985 phasin_2: phasin
       0.13    9.0   4.0       0.17    8.6   2.8    1.1  1  TIGR02668 moaA_archaeal: probable molybdenum cofactor biosynthesis protein A


Domain annotation for each model (and alignments):
>> TIGR00687  pyridox_kin: pyridoxal kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   4.9   1.5e-05     0.013     123     242 ..       8     128 ..       1     138 [. 0.81

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 1.5e-05
   TIGR00687 123 vvaedlaevlvekaiPvaDiitPnlfelelLterkvet.leealaaadaLiakGpkivlvkhLvragksrdr.sieilvvtaegaweiskpllqfdrepvGvGDliaalllakllrgkslke 242
                  vae ++e+++e + PvaD        +e +t ++ve  +ee ++++++  +  +  v  k + + g++ ++   e++++ +e + e+++  +++  ++    D+ aall a+ +  k  + 
  MMETSP1137-20121227|8219_1   8 EVAEAVEEAVAETVEPVADAAVEATAAVEEITPEPVEEvVEEMIKTVEEGVEAAVAAV-EKAVEAPGATVEEaVAETVAAVEESVAEVTEAAAELVAPKSAETDAAAALLSAQRRCVKDSVS 128
                 599******************************9997625778888887777766655.3566666766665478999999*****************************998766555544 PP

>> TIGR03998  thiol_BshC: bacillithiol biosynthesis cysteine-adding enzyme BshC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   2.2   2.9e-05     0.024     376     470 ..       9     103 ..       4     119 .. 0.75

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 2.9e-05
   TIGR03998 376 ierkveklLeklqlsveelaegveelkervleeqaeeeidalfeeakeqikaalkelkeelakvdatleklaekneakitkqvefLekrlerair 470
                 + + ve  +++    v++ a ++ + +e+++ e  ee +++ ++ ++e ++aa+ ++++++++ +at+e+++ ++ a +++ v+  ++ +   ++
  MMETSP1137-20121227|8219_1   9 VAEAVEEAVAETVEPVADAAVEATAAVEEITPEPVEEVVEEMIKTVEEGVEAAVAAVEKAVEAPGATVEEAVAETVAAVEESVAEVTEAAAELVA 103
                 44556666666666667767777777777777777777777777778888889999999999999999999999999999999998887766555 PP

>> TIGR02135  phoU_full: phosphate transport system regulatory protein PhoU
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   1.8   5.8e-05     0.048      88     181 ..      21     114 ..       7     122 .. 0.70

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 5.8e-05
   TIGR02135  88 LERiGDeakkiakivlrlkeeeaksevleelekmgklvlkmlkkaldafankdaelakqvaeldeevdelyrqivrelveymkedpenieaale 181
                 +E ++D a++ + +v++ ++e+ +++v+e+++++++ v+  ++++ +a++   a+ ++ vae   +v e   ++ +  +e +  + +++ aa++
  MMETSP1137-20121227|8219_1  21 VEPVADAAVEATAAVEEITPEPVEEVVEEMIKTVEEGVEAAVAAVEKAVEAPGATVEEAVAETVAAVEESVAEVTEAAAELVAPKSAETDAAAA 114
                 6889*******************999999****9999999999999998765555555555555554444444444444443333333333333 PP

>> TIGR01985  phasin_2: phasin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   2.6   4.2e-05     0.034       3      74 ..       3      71 ..       2      74 .. 0.93
   2 ?    5.2   4.4    0.0076       6.2       1      50 [.      45     102 ..      45     121 .. 0.47

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 4.2e-05
   TIGR01985  3 paeirdfaekgvdqakeafaklkkaaeettkaledalstssktaaeiskkviefleanaeaafdflqkLvsA 74
                p+++ ++ae   + ++e  + +++aa e t+a+e+++   +++++e++  +i+ +e+ +eaa+  ++k v+A
  MMETSP1137-20121227|8219_1  3 PTAVEEVAEAVEEAVAETVEPVADAAVEATAAVEEIT---PEPVEEVVEEMIKTVEEGVEAAVAAVEKAVEA 71
                6789999****************************99...999*******************9999998887 PP

  == domain 2    score: 5.2 bits;  conditional E-value: 0.0076
   TIGR01985   1 evpaeirdfaekgvdqakeafaklkka........aeettkaledalstssktaaeis 50 
                 ev +e+ +++e+gv+ a +a +k  +a         +et++a+e++++++++ aae++
  MMETSP1137-20121227|8219_1  45 EVVEEMIKTVEEGVEAAVAAVEKAVEApgatveeaVAETVAAVEESVAEVTEAAAELV 102
                 5677777777777777777766654441000000033344444444444444444333 PP

>> TIGR02668  moaA_archaeal: probable molybdenum cofactor biosynthesis protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   2.8   0.00021      0.17     131     216 ..       4      97 ..       2     106 .. 0.76

  Alignments for each domain:
  == domain 1    score: 8.6 bits;  conditional E-value: 0.00021
   TIGR02668 131 daleevlegiekAvdvgltPvKlnmv....vlkglneee....vkellelaaeeegailqliElepeeegekelkkyaidikeieeeleekadk 216
                 +a+eev e++e+Av   ++Pv    v     +++++ e     v+e++++++e  +a++  +E   e  g+++ ++ a+ +  +ee+++e +++
  MMETSP1137-20121227|8219_1   4 TAVEEVAEAVEEAVAETVEPVADAAVeataAVEEITPEPveevVEEMIKTVEEGVEAAVAAVEKAVEAPGATVEEAVAETVAAVEESVAEVTEA 97 
                 5799****************97655522222333443322223788888888889999999999999999999999999999999999887665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (145 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       553  (0.134812); expected 82.0 (0.02)
Passed bias filter:                      209  (0.0509508); expected 82.0 (0.02)
Passed Vit filter:                        21  (0.00511945); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.24u 0.17s 00:00:00.41 Elapsed: 00:00:00.40
# Mc/sec: 478.46
//
Query:       MMETSP1137-20121227|8220_1  [L=351]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (351 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       109  (0.0265724); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.18s 00:00:00.45 Elapsed: 00:00:00.45
# Mc/sec: 1029.51
//
Query:       MMETSP1137-20121227|8222_1  [L=350]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.5e-10   39.0   0.0    6.5e-09   33.7   0.0    2.3  2  TIGR01830 3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase
    1.7e-10   38.5   0.5    4.7e-10   37.1   0.1    1.8  2  TIGR03206 benzo_BadH: 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase
    1.8e-10   38.3   0.0    2.2e-09   34.7   0.0    2.1  2  TIGR01963 PHB_DH: 3-hydroxybutyrate dehydrogenase
    6.5e-09   33.6   0.1    4.1e-06   24.5   0.0    2.2  2  TIGR01829 AcAcCoA_reduct: acetoacetyl-CoA reductase
    3.1e-06   24.7   0.1    4.5e-06   24.2   0.1    1.1  1  TIGR01289 LPOR: light-dependent protochlorophyllide reductase
    3.7e-05   21.0   0.1      0.037   11.2   0.0    2.4  2  TIGR01831 fabG_rel: putative 3-oxoacyl-(acyl-carrier-protein) reductase
    7.9e-05   19.0   0.4     0.0001   18.7   0.3    1.1  1  TIGR02632 RhaD_aldol-ADH: rhamnulose-1-phosphate aldolase/alcohol dehydrogenase
    0.00015   19.1   0.1     0.0015   15.9   0.0    2.1  2  TIGR01832 kduD: 2-deoxy-D-gluconate 3-dehydrogenase
    0.00028   18.2   0.0    0.00043   17.6   0.0    1.3  1  TIGR02415 23BDH: acetoin reductases
     0.0069   13.6   0.0       0.02   12.1   0.1    1.6  2  TIGR01500 sepiapter_red: sepiapterin reductase


Domain annotation for each model (and alignments):
>> TIGR01830  3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.7   0.0   1.6e-11   6.5e-09       1     138 [.       6     143 ..       6     147 .. 0.79
   2 ?    2.8   0.0     0.044        18     148     187 ..     191     228 ..     189     238 .. 0.80

  Alignments for each domain:
  == domain 1    score: 33.7 bits;  conditional E-value: 1.6e-11
   TIGR01830   1 alvtGasrgiGkaiakklak.egakvviterskeekaeelaeelke...agvkaaavkldvsdeeevkelveeveeel...geidilvnnAGitrDklllrmkeedwdevikvnLkgvfnvtkavlkkmikkrsGriinissvvg 138
                 ++vtG++ giG a+ k la+ +g++v + +r+k++ ++++a+ +++      k   +++d  ++++v ++ ++v+++l   +++  lvnnAG     l   ++    +ev++vnL g  +++ a l  ++ +  Gri+n++s +g
  MMETSP1137-20121227|8222_1   6 VVVTGGNSGIGLALCKILATdHGCHVYLGSRNKDKGLAAIASLVEAnkdLESKLELLNVDTGSDDSVAAAAASVKDSLpegEKLYALVNNAGTG---LSHGVS---PEEVLNVNLYGPKRMVDAFL-PLLSALDGRIVNLGSGAG 143
                 68****************9637***********9998877766655211567888899999999*99999888887653327899*******75...443344...468*********99998776.567789*******99766 PP

  == domain 2    score: 2.8 bits;  conditional E-value: 0.044
   TIGR01830 148 YaasKaGligltkslakElasrnitvnavaPGfietdmte 187
                 Y  sKa l   t  la E     i   +v+PG+i+t + +
  MMETSP1137-20121227|8222_1 191 YGLSKACLALYTMLLAAEHP--KIMSSCVSPGMINTAIVK 228
                 66677777777888887764..6999**********9865 PP

>> TIGR03206  benzo_BadH: 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.1   0.1   1.2e-12   4.7e-10       4     142 ..       4     143 ..       1     160 [. 0.81
   2 ?   -1.1   0.0      0.52   2.1e+02     152     192 ..     191     229 ..     190     241 .. 0.77

  Alignments for each domain:
  == domain 1    score: 37.1 bits;  conditional E-value: 1.2e-12
   TIGR03206   4 kvaivtgggggiggaicrrfaee.gakvavldlnae....aaekvaaairekggkaeavavditdrasvdaavaaaeealgp...vdvlvnnagwdvlkpflktekaewerliainltgalymhhavlkgmverkagrivniasdaa 142
                 + ++vtgg  gig a+c+ +a + g++v +   n++    a   + +a ++   k e ++vd  + +sv aa a+++++l        lvnnag    +          e ++ +nl+g   m  a l+ ++   +grivn+ s a+
  MMETSP1137-20121227|8222_1   4 RRVVVTGGNSGIGLALCKILATDhGCHVYLGSRNKDkglaAIASLVEANKDLESKLELLNVDTGSDDSVAAAAASVKDSLPEgekLYALVNNAGTGLSHG------VSPEEVLNVNLYGPKRMVDAFLP-LLSALDGRIVNLGSGAG 143
                 679***************9986438999887777762221445556666777899999**********************651124579*****876544......345789****************9.567889*******9987 PP

  == domain 2    score: -1.1 bits;  conditional E-value: 0.52
   TIGR03206 152 yaackgglvafsktlarelarhgitvnvvcpgptdtalled 192
                 y   k  l  ++  la e+   +i    v pg  +ta+++ 
  MMETSP1137-20121227|8222_1 191 YGLSKACLALYTMLLAAEHP--KIMSSCVSPGMINTAIVKG 229
                 56677778888888888886..5788899999999999875 PP

>> TIGR01963  PHB_DH: 3-hydroxybutyrate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.7   0.0   5.5e-12   2.2e-09       2     139 ..       4     142 ..       3     151 .. 0.81
   2 ?    1.1   0.0       0.1        42     169     189 ..     207     228 ..     190     240 .. 0.75

  Alignments for each domain:
  == domain 1    score: 34.7 bits;  conditional E-value: 5.5e-12
   TIGR01963   2 kvalvtGaasGiglaiakelaaa.Gakvvvndle.eeaaeaaak...eleeaggevlalkadvtkeeeiadlieavaaef...gsldiLvnnAGiqhvapieefptekfekiiavnltsafhtiraalpimkkqgwGriiniasvh 139
                 + ++vtG +sGigla+ k la + G++v + + + +++++a+a+   + ++   + + l++d  + +++a   + v++++    +l  LvnnAG    + +        e++++vnl ++ +++ a lp + +   Gri+n++s  
  MMETSP1137-20121227|8222_1   4 RRVVVTGGNSGIGLALCKILATDhGCHVYLGSRNkDKGLAAIASlveANKDLESKLELLNVDTGSDDSVAAAAASVKDSLpegEKLYALVNNAGTGLSHGVSP------EEVLNVNLYGPKRMVDAFLPLLSAL-DGRIVNLGSGA 142
                 679*****************9744******99995555555554110445667889999***********9999999987222456689*****999888853......679*****************99776.5*******965 PP

  == domain 2    score: 1.1 bits;  conditional E-value: 0.1
   TIGR01963 169 Aet.gitanaicPgyvrtpLve 189
                 Ae+ +i + ++ Pg ++t +v+
  MMETSP1137-20121227|8222_1 207 AEHpKIMSSCVSPGMINTAIVK 228
                 4333899************997 PP

>> TIGR01829  AcAcCoA_reduct: acetoacetyl-CoA reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.5   0.0     1e-08   4.1e-06       4      89 ..       7      99 ..       4     144 .. 0.73
   2 !    7.0   0.0    0.0022       0.9     150     190 ..     191     229 ..     189     235 .. 0.89

  Alignments for each domain:
  == domain 1    score: 24.5 bits;  conditional E-value: 1e-08
   TIGR01829  4 lvtGglgGiGtaickrlakd.Gykvvanvapnee...rakewlqekevegfdvavvkadvssfeeakaavakveael...GpvdvlvnnaGit 89
                +vtGg  GiG a+ck la+d G++v  + +++++   + +++ ++++  ++++ ++++d  s ++ +aa a+v++ l    ++  lvnnaG  
  MMETSP1137-20121227|8222_1  7 VVTGGNSGIGLALCKILATDhGCHVYLGSRNKDKglaAIASLVEANKDLESKLELLNVDTGSDDSVAAAAASVKDSLpegEKLYALVNNAGTG 99
                79***************9755****99888644311134556677788889***********99999998888887622146889*****964 PP

  == domain 2    score: 7.0 bits;  conditional E-value: 0.0022
   TIGR01829 150 ysaakaGliGftkalaqegakkgvtvnviaPGyiatemvka 190
                 y  +ka l  +t+ la+e  k  +    ++PG i+t++vk 
  MMETSP1137-20121227|8222_1 191 YGLSKACLALYTMLLAAEHPK--IMSSCVSPGMINTAIVKG 229
                 7889**************865..8899**********9985 PP

>> TIGR01289  LPOR: light-dependent protochlorophyllide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.2   0.1   1.1e-08   4.5e-06       5      91 ..       5      98 ..       2     109 .. 0.82

  Alignments for each domain:
  == domain 1    score: 24.2 bits;  conditional E-value: 1.1e-08
   TIGR01289  5 tviitgassglglaaakalvekgkwhvvmacrdlekaekaaksl.glpkd...sytilkldlasldsvrkfveqfres...grsldalvcnaav 91
                 v++tg  sg+gla  k l+     hv +  r+ +k   a  sl   +kd   +  +l++d +s dsv    ++ ++s   g +l alv na  
  MMETSP1137-20121227|8222_1  5 RVVVTGGNSGIGLALCKILATDHGCHVYLGSRNKDKGLAAIASLvEANKDlesKLELLNVDTGSDDSVAAAAASVKDSlpeGEKLYALVNNAGT 98
                69*****************98777************97776555155555222467999**********999998886555899*****99975 PP

>> TIGR01831  fabG_rel: putative 3-oxoacyl-(acyl-carrier-protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.2   0.0   8.9e-05     0.037       1     138 [.       6     142 ..       6     150 .. 0.66
   2 !    7.6   0.0    0.0012      0.48     149     188 ..     191     228 ..     188     259 .. 0.84

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 8.9e-05
   TIGR01831   1 vlvtgasrgigraialklaad.gfeiavhyrsdradaeesvaairaq...ggnarllkfdva..drvavrev.leadiaehgayygvvlnagiardaafpalseedwdavietnldgfynvihplvmpmirarkggriitlasvs 138
                 v+vtg   gig a+   la+d g ++ +  r++  +  + ++ ++a+    ++ +ll+ d    d va+ ++ ++  + e    y +v nag         +s    + v++ nl g   +++   +p++ a + gri+ l s +
  MMETSP1137-20121227|8222_1   6 VVVTGGNSGIGLALCKILATDhGCHVYLGSRNKDKGLAAIASLVEANkdlESKLELLNVDTGsdDSVAAAAAsVKDSLPEGEKLYALVNNAGTGLSHG---VSP---EEVLNVNLYGPKRMVDA-FLPLLSALD-GRIVNLGSGA 142
                 79**************9998768999998888777766666666665111567778888875225555554415555666778999999999765433...232...34666666666666654.456666543.5666666655 PP

  == domain 2    score: 7.6 bits;  conditional E-value: 0.0012
   TIGR01831 149 ysaakagligatkalavelakrkitvnciapglidtemva 188
                 y  +ka l   t  la e  + ki   c++pg+i+t +v+
  MMETSP1137-20121227|8222_1 191 YGLSKACLALYTMLLAAE--HPKIMSSCVSPGMINTAIVK 228
                 556777777777777766..468*************9986 PP

>> TIGR02632  RhaD_aldol-ADH: rhamnulose-1-phosphate aldolase/alcohol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.3   2.5e-07    0.0001     413     508 ..       2     103 ..       1     114 [. 0.75

  Alignments for each domain:
  == domain 1    score: 18.7 bits;  conditional E-value: 2.5e-07
   TIGR02632 413 arrvalvtGgasGiGrevarrlv.deGahvvladldaeaaeavaaelvdkfG..adkavalkldvtdeeavkaafaevalay..G.GvdivvnnaGiavskp 508
                 a r ++vtGg sGiG ++++ l+ d+G hv l   ++++  a  a lv+     + k   l++d  ++++v+aa a v  +   G  + ++vnnaG   s+ 
  MMETSP1137-20121227|8222_1   2 AARRVVVTGGNSGIGLALCKILAtDHGCHVYLGSRNKDKGLAAIASLVEANKdlESKLELLNVDTGSDDSVAAAAASVKDSLpeGeKLYALVNNAGTGLSHG 103
                 667779**************99846799*****99999877777777644330134445599**********999888655421325889999999887765 PP

>> TIGR01832  kduD: 2-deoxy-D-gluconate 3-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   3.7e-06    0.0015       5      90 ..       3      98 ..       1     140 [. 0.70
   2 ?    1.0   0.0      0.13        55     151     192 ..     189     228 ..     187     242 .. 0.84

  Alignments for each domain:
  == domain 1    score: 15.9 bits;  conditional E-value: 3.7e-06
   TIGR01832  5 GkvalvtGantGlGqgiavglae.aGadivgvgiselsetqekv....ea...lGrkflslkadladeeaa...kalvdeaveeagkidilvnnaGi 90
                 ++++vtG n+G+G +++  la+  G+++   g ++ ++  +++    ea   l  k++ l++d  + +++   +a v++ + e +k+  lvnnaG 
  MMETSP1137-20121227|8222_1  3 ARRVVVTGGNSGIGLALCKILATdHGCHVYL-GSRNKDKGLAAIaslvEAnkdLESKLELLNVDTGSDDSVaaaAASVKDSLPEGEKLYALVNNAGT 98
                6889*****************9725777654.444444444444000043111456677788887665544000455677777889*********95 PP

  == domain 2    score: 1.0 bits;  conditional E-value: 0.13
   TIGR01832 151 psytasksavaGltkllanewakkginvnaiaPGyletnnte 192
                 p y  sk  +a  t lla+e+ k  i    ++PG ++t+  +
  MMETSP1137-20121227|8222_1 189 PPYGLSKACLALYTMLLAAEHPK--IMSSCVSPGMINTAIVK 228
                 78999***************875..889999****9998665 PP

>> TIGR02415  23BDH: acetoin reductases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.0     1e-06   0.00043       3      93 ..       6     104 ..       4     159 .. 0.70

  Alignments for each domain:
  == domain 1    score: 17.6 bits;  conditional E-value: 1e-06
   TIGR02415   3 alvtGaaqGiGkaiaerLakd.Gfavavadln.eetaketakelke.kg..tkavavkldvsdkseveeaveqavekl...GeldvlvnnaGvalvtpi 93 
                  +vtG+  GiG a+ + La d G +v +   n ++ ++++a+ +++ k+   k   +++d  + ++v +a  + +++l    +l  lvnnaG +l++ +
  MMETSP1137-20121227|8222_1   6 VVVTGGNSGIGLALCKILATDhGCHVYLGSRNkDKGLAAIASLVEAnKDleSKLELLNVDTGSDDSVAAAAASVKDSLpegEKLYALVNNAGTGLSHGV 104
                 58*****************9889******99944455555554443134114555677888778877776555555552216799*******9887765 PP

>> TIGR01500  sepiapter_red: sepiapterin reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.1   0.1   4.9e-05      0.02       3      97 ..       6      98 ..       4     111 .. 0.74
   2 ?   -1.9   0.0      0.96   3.9e+02     164     200 ..     191     226 ..     187     236 .. 0.86

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 4.9e-05
   TIGR01500  3 llvtGasrGfGrelaqelakrlkaegsvlvLlaRndeaLkeskaeieaevsals..vdlvsldleaakdvedllkaleesikkeeyerillinnaGt 97
                ++vtG   G+G +l + la     +g  + L +Rn++    + a+++   ++l   ++l  +d ++   v     ++++s  +e+ +   l+nnaGt
  MMETSP1137-20121227|8222_1  6 VVVTGGNSGIGLALCKILAT---DHGCHVYLGSRNKDKGLAAIASLVEANKDLEskLELLNVDTGSDDSVAAAAASVKDSL-PEGEKLYALVNNAGT 98
                68*****************9...99**********9876666666664466665115555556666666777777777664.445555678999998 PP

  == domain 2    score: -1.9 bits;  conditional E-value: 0.96
   TIGR01500 164 YCaskaaRdmffqvLaleekedvkvLnYapGvlDtdm 200
                 Y  ska   ++   La e+ +++     +pG+++t +
  MMETSP1137-20121227|8222_1 191 YGLSKACLALYTMLLAAEH-PKIMSSCVSPGMINTAI 226
                 6678999999999999999.99999999999999975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (350 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        82  (0.0199902); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                        22  (0.00536324); expected 4.1 (0.001)
Passed Fwd filter:                        10  (0.00243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.31u 0.15s 00:00:00.46 Elapsed: 00:00:00.46
# Mc/sec: 1004.26
//
Query:       MMETSP1137-20121227|8223_1  [L=314]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.35    7.9   7.1       0.29    8.1   4.1    1.4  2  TIGR00601 rad23: UV excision repair protein Rad23


Domain annotation for each model (and alignments):
>> TIGR00601  rad23: UV excision repair protein Rad23
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   4.1   7.1e-05      0.29      92     166 ..      74     149 ..      57     160 .. 0.64
   2 ?   -3.8   0.0       0.3   1.2e+03     304     339 ..     195     231 ..     189     233 .. 0.68

  Alignments for each domain:
  == domain 1    score: 8.1 bits;  conditional E-value: 7.1e-05
   TIGR00601  92 esaptptpsatp..asvaekksaaPasaveeessaeeeatatalesedtsaesegdsdretlvvGsereetveeime 166
                 ++a++p+ +atp  ++ +e+++++P s  +++++  e+a ++a+e+++  a+ + + d     + +ere+ ++++++
  MMETSP1137-20121227|8223_1  74 ALAAAPATAATPakPAASEAPANTPKSDKKDKKKGGEKAETPAKEKKEKEAPKKEEKDP-VKEAAKEREKLLKKVIK 149
                 34444444344400445566677899999999999999999999988887775543332.23355677777777665 PP

  == domain 2    score: -3.8 bits;  conditional E-value: 0.3
   TIGR00601 304 pveelegesdlvegtGe.iaeaglgqieqiqvtpeek 339
                 p e++e++++  +++G+ +  ag+ q+  + + pe+k
  MMETSP1137-20121227|8223_1 195 PEEGAEDRKGCSGHVGKmVFSAGVKQLAIVSYVPEDK 231
                 5555666666666666525678888988889988887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (314 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       196  (0.0477816); expected 82.0 (0.02)
Passed bias filter:                      147  (0.0358362); expected 82.0 (0.02)
Passed Vit filter:                        24  (0.0058508); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.30u 0.15s 00:00:00.44 Elapsed: 00:00:00.38
# Mc/sec: 1090.65
//
Query:       MMETSP1137-20121227|8224_1  [L=467]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.3e-05   20.8   0.1    0.00021   19.7   0.1    1.5  1  TIGR00058 Hemerythrin: hemerythrin family non-heme iron proteins
     0.0018   16.2   0.5     0.0092   13.9   0.3    2.0  1  TIGR02481 hemeryth_dom: hemerythrin-like metal-binding domain


Domain annotation for each model (and alignments):
>> TIGR00058  Hemerythrin: hemerythrin family non-heme iron proteins
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.1     1e-07   0.00021      15      90 ..     299     374 ..     294     382 .. 0.90

  Alignments for each domain:
  == domain 1    score: 19.7 bits;  conditional E-value: 1e-07
   TIGR00058  15 ydeldeehkklfnaifalaesesadalkelidvvtkhfkdeealmekakysevkehkkahedflaklkglkapvad 90 
                   +ld eh +  +a+  la+++s  al ++ +  ++hf++eeal+++  y +++  k++   f a++   ++  ad
  MMETSP1137-20121227|8224_1 299 VTDLDREHERCAAALRILAQTRSRAALSSVFAEYQAHFAHEEALLDQWLYAQQSCTKATVVAFDASAGQRRSHFAD 374
                 568**************************************************99999999999888887776665 PP

>> TIGR02481  hemeryth_dom: hemerythrin-like metal-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.3   4.5e-06    0.0092       8      93 ..     297     374 ..     293     421 .. 0.82

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 4.5e-06
   TIGR02481   8 vgieeiDaqHkeLvelinellealkagegkeelkevlkeLkeyvekHFkeEEklmeevgypeleeHkkeHeklvkkveelqeavae 93 
                 v + ++D++H++  ++++ l ++        + + +l ++ +  + HF++EE+l+++  y + ++ k++  ++ +++ + ++++a+
  MMETSP1137-20121227|8224_1 297 VRVTDLDREHERCAAALRILAQT--------RSRAALSSVFAEYQAHFAHEEALLDQWLYAQQSCTKATVVAFDASAGQRRSHFAD 374
                 67788889998877777777662........33456677778889******************99999999999988888888887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (467 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       103  (0.0251097); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.35u 0.11s 00:00:00.46 Elapsed: 00:00:00.46
# Mc/sec: 1339.98
//
Query:       MMETSP1137-20121227|8225_1  [L=787]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (787 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        72  (0.0175524); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.13s 00:00:00.59 Elapsed: 00:00:00.62
# Mc/sec: 1675.41
//
Query:       MMETSP1137-20121227|8226_1  [L=55]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        27  (0.00658216); expected 82.0 (0.02)
Passed bias filter:                       27  (0.00658216); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.25
# Mc/sec: 290.38
//
Query:       MMETSP1137-20121227|8227_1  [L=193]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (193 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       563  (0.13725); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.16s 00:00:00.43 Elapsed: 00:00:00.44
# Mc/sec: 578.95
//
Query:       MMETSP1137-20121227|8228_1  [L=473]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.2e-22   77.8   0.1    1.4e-19   68.6   0.0    3.0  2  TIGR01289 LPOR: light-dependent protochlorophyllide reductase
    9.1e-19   65.5   0.2    1.5e-18   64.8   0.2    1.4  1  TIGR01963 PHB_DH: 3-hydroxybutyrate dehydrogenase
    7.4e-15   53.1   0.0    1.7e-12   45.4   0.0    2.2  2  TIGR01830 3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase
      3e-14   50.1   0.3      4e-14   49.7   0.2    1.1  1  TIGR02632 RhaD_aldol-ADH: rhamnulose-1-phosphate aldolase/alcohol dehydrogenase
    4.9e-14   50.2   0.1      1e-13   49.2   0.0    1.6  2  TIGR01832 kduD: 2-deoxy-D-gluconate 3-dehydrogenase
    1.1e-12   45.6   2.1    1.6e-12   45.2   0.9    1.6  2  TIGR03206 benzo_BadH: 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase
      8e-12   42.9   0.1    2.5e-11   41.3   0.1    1.7  2  TIGR02415 23BDH: acetoin reductases
    7.8e-11   39.9   0.0    1.9e-08   32.1   0.0    2.1  2  TIGR01829 AcAcCoA_reduct: acetoacetyl-CoA reductase
    5.6e-09   33.6   1.7    1.8e-08   32.0   1.2    1.9  1  TIGR03971 SDR_subfam_1: oxidoreductase, SDR family
    7.5e-06   23.3   1.4    1.4e-05   22.4   0.9    1.6  1  TIGR01831 fabG_rel: putative 3-oxoacyl-(acyl-carrier-protein) reductase
    7.5e-06   23.2   0.2    1.2e-05   22.5   0.2    1.3  1  TIGR03325 BphB_TodD: cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase
    0.00037   17.8   0.0     0.0022   15.2   0.0    2.0  1  TIGR01500 sepiapter_red: sepiapterin reductase
     0.0025   14.8   0.2     0.0043   14.0   0.1    1.3  1  TIGR02685 pter_reduc_Leis: pteridine reductase


Domain annotation for each model (and alignments):
>> TIGR01289  LPOR: light-dependent protochlorophyllide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.6   0.0   4.5e-22   1.4e-19       4     143 ..     150     291 ..     148     365 .. 0.77
   2 ?    1.3   0.0      0.13        42     296     312 ..     450     466 ..     439     469 .. 0.79

  Alignments for each domain:
  == domain 1    score: 68.6 bits;  conditional E-value: 4.5e-22
   TIGR01289   4 ptviitgassglglaaakalvekgkwhvvmacrdlekaekaakslg.lpkd..sytilkldlasldsvrkfveqfre...sgrsldalvcnaavylpllkeplfsadgyelsvatnhlghfllsnllledlkksdekdkrliilgs 143
                  t++itga +glg+++a+ l++ g  hvv++ r ++k  +a  +l  l  +  +   + ldla l svr f +++ +   +g ++d+l+ na v    + e + +adg+e  ++ nhlghf l   +l  l++++    r+i + s
  MMETSP1137-20121227|8228_1 150 RTIVITGANTGLGFESARRLAAAG-AHVVITARSYDKGAEAISRLRaLVGEdaQLKSVALDLADLRSVRSFPSRLDAalgAGAAVDVLMNNAGVM--AIPERRTTADGFERQLGVNHLGHFALVAAMLPYLRRAPA-GFRVINVAS 291
                 599*********************.9***********9888877641333301345578************9988763336899********996..578999****************************99986.456666554 PP

  == domain 2    score: 1.3 bits;  conditional E-value: 0.13
   TIGR01289 296 sddekakklwelseklv 312
                  d++ a +lw+lse+l 
  MMETSP1137-20121227|8228_1 450 DDQRLAARLWDLSEQLA 466
                 3555699*******996 PP

>> TIGR01963  PHB_DH: 3-hydroxybutyrate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.8   0.2   4.7e-21   1.5e-18       2     143 ..     150     298 ..     149     362 .. 0.85

  Alignments for each domain:
  == domain 1    score: 64.8 bits;  conditional E-value: 4.7e-21
   TIGR01963   2 kvalvtGaasGiglaiakelaaaGakvvvndle.eeaaeaaakeleeag..gevlalkadvtkeeeiadlieavaaefg...sldiLvnnAGiqhvapieefptekfekiiavnltsafhtiraalpimkkqgwG.riiniasv.hglva 143
                 +++++tGa++G+g++ a++laaaGa+vv++  + +++aea+++  +  g  ++ + +++d+++ +++++  +++ a++g   ++d+L+nnAG+  +        + fe+ + vn  + f ++ a lp ++++  G r+in+as+ h +v+
  MMETSP1137-20121227|8228_1 150 RTIVITGANTGLGFESARRLAAAGAHVVITARSyDKGAEAISRLRALVGedAQLKSVALDLADLRSVRSFPSRLDAALGagaAVDVLMNNAGVMAIP-ERRTTADGFERQLGVNHLGHFALVAAMLPYLRRAPAGfRVINVASAaHEFVS 298
                 89****************************99966667776665554441155667899*********9999999988733369********98874.46678899************************************96355554 PP

>> TIGR01830  3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.4   0.0   5.3e-15   1.7e-12       2     137 ..     153     293 ..     152     305 .. 0.85
   2 !    5.6   0.0    0.0077       2.4     146     193 ..     319     368 ..     314     396 .. 0.85

  Alignments for each domain:
  == domain 1    score: 45.4 bits;  conditional E-value: 5.3e-15
   TIGR01830   2 lvtGasrgiGkaiakklakegakvviterskeekaeelae..elkeagvkaaavkldvsdeeevkelveeveeelg...eidilvnnAGitrDklllrmkeedwdevikvnLkgvfnvtkavlkkmikkrsG.riinissvv 137
                 ++tGa+ g+G + a++la++ga+vvit rs ++ ae+++   +l  + ++ ++v+ld++d  +v+++ +++ ++lg    +d+l+nnAG+       r + + +++ + vn  g f ++ a+l  + ++ +G r+in++s +
  MMETSP1137-20121227|8228_1 153 VITGANTGLGFESARRLAAAGAHVVITARSYDKGAEAISRlrALVGEDAQLKSVALDLADLRSVRSFPSRLDAALGagaAVDVLMNNAGVMAI-PERRTTADGFERQLGVNHLGHFALVAAMLPYLRRAPAGfRVINVASAA 293
                 79*************************99999888877651134445567788999****99999988877777664448**********874.55799999****************************9989*****965 PP

  == domain 2    score: 5.6 bits;  conditional E-value: 0.0077
   TIGR01830 146 anYaasKaGligltkslakElasrnitvnava..PGfietdmteklsekv 193
                  nY  sKa  i ++  l + l + +++  av+  PG ++td+ + +  k 
  MMETSP1137-20121227|8228_1 319 GNYGLSKAANILFSNELQRRLEASGVRGTAVSlhPGVVDTDLGRFIGAKS 368
                 59************************99988666*******988776665 PP

>> TIGR02632  RhaD_aldol-ADH: rhamnulose-1-phosphate aldolase/alcohol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.7   0.2   1.3e-16     4e-14     410     555 ..     145     293 ..     140     356 .. 0.85

  Alignments for each domain:
  == domain 1    score: 49.7 bits;  conditional E-value: 1.3e-16
   TIGR02632 410 kelarrvalvtGgasGiGrevarrlvdeGahvvladldaeaaeavaaelvdkfGadkav.alkldvtdeeavkaafa..evalayG.GvdivvnnaGiavskpleeteleeWdlnldilatGyflvareaarllrkqglggnlvfiaskn 555
                 ++l +r +++tG+ +G+G e arrl++ Gahvv++    ++ ++    l    G+d+ + ++ ld++d  +v++     ++al  G  vd+++nnaG++ + p   t+++ ++++l ++  G+f +       lr+   g  ++ +as  
  MMETSP1137-20121227|8228_1 145 HSLDGRTIVITGANTGLGFESARRLAAAGAHVVITARSYDKGAEAISRLRALVGEDAQLkSVALDLADLRSVRSFPSrlDAALGAGaAVDVLMNNAGVM-AIPERRTTADGFERQLGVNHLGHFALVAAMLPYLRRAPAGFRVINVASAA 293
                 67899*********************************999999999999999*99875389**********9754411344433337*********96.5677889999**************88777888888888888888888764 PP

>> TIGR01832  kduD: 2-deoxy-D-gluconate 3-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.2   0.0   3.3e-16     1e-13       2     141 ..     146     292 ..     145     305 .. 0.79
   2 ?   -3.8   0.0         5   1.6e+03     200     231 ..     392     423 ..     388     432 .. 0.65

  Alignments for each domain:
  == domain 1    score: 49.2 bits;  conditional E-value: 3.3e-16
   TIGR01832   2 sleGkvalvtGantGlGqgiavglaeaGadivgvgis..elsetqekveal.G..rkflslkadladeeaakal...vdeaveeagkidilvnnaGiirredavefsekdwddvlnvnlkavfllsqavakkllkqGrkgkiiniasl 141
                 sl+G+++++tGantGlG   a  la+aGa++v +++s  +  e+++++ al G  ++++s+ +dlad ++++++   +d a+ +   +d+l+nnaG++   +    +   ++  l vn    f l  a+   l +     ++in+as 
  MMETSP1137-20121227|8228_1 146 SLDGRTIVITGANTGLGFESARRLAAAGAHVVITARSydKGAEAISRLRALvGedAQLKSVALDLADLRSVRSFpsrLDAALGAGAAVDVLMNNAGVMAIPERRT-TADGFERQLGVNHLGHFALVAAMLPYLRRAPAGFRVINVASA 292
                 89*****************************9998762244677777766423225788999999888877665222788888888***********98877654.556789999999999999998888777777777899999985 PP

  == domain 2    score: -3.8 bits;  conditional E-value: 5
   TIGR01832 200 rnaaileriPagrwGepedlagaavflassas 231
                 r +a+l r+ ++     e  a++ vfla++a 
  MMETSP1137-20121227|8228_1 392 RLKAVLTRVKTTLLKPVELGANTQVFLAAAAD 423
                 66677777765544333333567888888775 PP

>> TIGR03206  benzo_BadH: 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.2   0.9   5.1e-15   1.6e-12       2     153 ..     148     304 ..     147     311 .. 0.83
   2 ?   -2.5   0.0       1.8   5.6e+02     152     189 ..     321     360 ..     315     383 .. 0.62

  Alignments for each domain:
  == domain 1    score: 45.2 bits;  conditional E-value: 5.1e-15
   TIGR03206   2 kdkvaivtgggggiggaicrrfaeegakvavldlnaeaaekvaaairekgg.ka..eavavditdrasvdaavaaaeealg...pvdvlvnnagwdvlkpflktekaewerliainltgalymhhavlkgmverkag.rivniasdaarvgssgeavya 153
                  ++++++tg   g+g    rr+a  ga+v +   + +   +  +++r+  g +a  ++va d++d  sv    +  + alg    vdvl+nnag   + +  +t    +er + +n  g + +  a+l+ +    ag r++n+as a     sge   a
  MMETSP1137-20121227|8228_1 148 DGRTIVITGANTGLGFESARRLAAAGAHVVITARSYDKGAEAISRLRALVGeDAqlKSVALDLADLRSVRSFPSRLDAALGagaAVDVLMNNAGVMAIPE-RRTTADGFERQLGVNHLGHFALVAAMLPYLRRAPAGfRVINVASAAH-EFVSGEQFSA 304
                 6799**************************99999887777777777754414422689***********9999999999844459********988865.56777789********************9999888889*****9665.5566776555 PP

  == domain 2    score: -2.5 bits;  conditional E-value: 1.8
   TIGR03206 152 yaackgglvafsktlarelarhgitvnvv..cpgptdtal 189
                 y   k   + fs  l r l   g+    v   pg  dt l
  MMETSP1137-20121227|8228_1 321 YGLSKAANILFSNELQRRLEASGVRGTAVslHPGVVDTDL 360
                 6666777777777777777666664443311466666665 PP

>> TIGR02415  23BDH: acetoin reductases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.3   0.1   8.1e-14   2.5e-11       2     141 ..     151     295 ..     150     308 .. 0.75
   2 ?   -1.3   0.0      0.81   2.5e+02     174     197 ..     347     370 ..     314     386 .. 0.75

  Alignments for each domain:
  == domain 1    score: 41.3 bits;  conditional E-value: 8.1e-14
   TIGR02415   2 valvtGaaqGiGkaiaerLakdGfavavadlneetaketak...elkekgtkavavkldvsdksevee...aveqaveklGeldvlvnnaGvalvtpileiteeeleklynvnvkgvlfGiqaaaekfkklkhkGkiinaasiagv 141
                 + ++tGa  G+G + a+rLa+ G +v+++    ++ +e+++    l  ++ + + v ld++d  +v +    ++ a      +dvl+nnaGv ++ p    t + +e++  vn  g +  + a    +++   + ++in as a  
  MMETSP1137-20121227|8228_1 151 TIVITGANTGLGFESARRLAAAGAHVVITARSYDKGAEAISrlrALVGEDAQLKSVALDLADLRSVRSfpsRLDAALGAGAAVDVLMNNAGVMAI-PERRTTADGFERQLGVNHLGHFALVAAMLPYLRRAPAGFRVINVASAAHE 295
                 679*************************998844444444401145556666777888887776666511156666666668**********998.5678899************97655555555566666777*******8864 PP

  == domain 2    score: -1.3 bits;  conditional E-value: 0.81
   TIGR02415 174 tvnayaPGivktemreeideklae 197
                 t  +  PG+v+t++ + i +k a 
  MMETSP1137-20121227|8228_1 347 TAVSLHPGVVDTDLGRFIGAKSAS 370
                 556788999999999988877665 PP

>> TIGR01829  AcAcCoA_reduct: acetoacetyl-CoA reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.1   0.0   5.9e-11   1.9e-08       3     137 ..     152     291 ..     150     306 .. 0.84
   2 !    5.7   0.0     0.007       2.2     148     208 ..     319     385 ..     314     400 .. 0.77

  Alignments for each domain:
  == domain 1    score: 32.1 bits;  conditional E-value: 5.9e-11
   TIGR01829   3 alvtGglgGiGtaickrlakdGykvvanvapneerakewlqekevegf..dvavvkadvssfeeakaavakveaelG...pvdvlvnnaGitrdavfkkmtkeqWeevidtnlnsvfnvtrpviegmlergfG.riiniss 137
                  ++tG+  G+G + ++rla++G +vv + ++ ++ a+++ + +++ g   +++ v  d+++  + ++  +++ a+lG    vdvl+nnaG+      ++ t++ +e  + +n  + f +   ++  ++    G r+in++s
  MMETSP1137-20121227|8228_1 152 IVITGANTGLGFESARRLAAAGAHVVITARSYDKGAEAISRLRALVGEdaQLKSVALDLADLRSVRSFPSRLDAALGagaAVDVLMNNAGVMA-IPERRTTADGFERQLGVNHLGHFALVAAMLPYLRRAPAGfRVINVAS 291
                 579***************************999999999888887655115677889999999999999999999984446*********975.44577888899999999999999999999999988887778999987 PP

  == domain 2    score: 5.7 bits;  conditional E-value: 0.007
   TIGR01829 148 anysaakaGliGftkalaqegakkgvtvnvia..PGyiatemvkavredv....lkkivaqiPvkrl 208
                  ny  +ka  i f+  l +   ++gv   +++  PG ++t++ + + ++     ++++ a++P+  l
  MMETSP1137-20121227|8228_1 319 GNYGLSKAANILFSNELQRRLEASGVRGTAVSlhPGVVDTDLGRFIGAKSasggVAAVEAGVPMDTL 385
                 59***********************976666555*******98887665411114556677777665 PP

>> TIGR03971  SDR_subfam_1: oxidoreductase, SDR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.0   1.2   5.6e-11   1.8e-08       1     156 [.     147     294 ..     147     363 .. 0.82

  Alignments for each domain:
  == domain 1    score: 32.0 bits;  conditional E-value: 5.6e-11
   TIGR03971   1 leGkvalitGaarGqGraeavrlaaeGadiiaidlceplsdvvtypaatredldetaklv..ealGrkvlarkadvrkleelravveegveefGrldvvvanaGvlsygrafelseeqWdtvldvnlkGvWktvkavvPalierknGGsiiivssvag 156
                 l+G+  +itGa  G G   a rlaa Ga ++            +y  +++  + +  +lv  +a+ + v+   ad+r++    + ++ ++     +dv+++naGv+++ +    +++ ++  l vn  G +  v a++P l  +  G  +i v+s+a 
  MMETSP1137-20121227|8228_1 147 LDGRTIVITGANTGLGFESARRLAAAGAHVVITA--------RSYDKGAE-AISRLRALVgeDAQLKSVALDLADLRSVRSFPSRLDAALGAGAAVDVLMNNAGVMAIPER-RTTADGFERQLGVNHLGHFALVAAMLPYLRRAPAGFRVINVASAAH 294
                 89**************************998542........23444433.3344333332145567788889**********************************9765.6799*************************************99874 PP

>> TIGR01831  fabG_rel: putative 3-oxoacyl-(acyl-carrier-protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.4   0.9   4.5e-08   1.4e-05       2     138 ..     153     293 ..     152     368 .. 0.81

  Alignments for each domain:
  == domain 1    score: 22.4 bits;  conditional E-value: 4.5e-08
   TIGR01831   2 lvtgasrgigraialklaadgfeiavhyrsdradaees..vaairaqggnarllkfdvadrvavrev...leadiaehgayygvvlnagiardaafp..alseedwdavietnldgfynvihplvmpmirarkggriitlasvs 138
                 ++tga  g+g   a +laa+g ++ +  rs   +ae+   + a++ + ++ + + +d+ad  +vr+    l+a + +  a   ++ nag+    a+p    + + ++  +  n  g + ++  ++  + ra  g r+i +as +
  MMETSP1137-20121227|8228_1 153 VITGANTGLGFESARRLAAAGAHVVITARSYDKGAEAIsrLRALVGEDAQLKSVALDLADLRSVRSFpsrLDAALGAGAAVDVLMNNAGVM---AIPerRTTADGFERQLGVNHLGHFALVAAMLPYLRRAPAGFRVINVASAA 293
                 79***************************998888753115566666666777999********975333888888877888888899996...44411457788999999999999999987766667788899999999865 PP

>> TIGR03325  BphB_TodD: cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.5   0.2   3.9e-08   1.2e-05       3     143 ..     147     291 ..     145     307 .. 0.74

  Alignments for each domain:
  == domain 1    score: 22.5 bits;  conditional E-value: 3.9e-08
   TIGR03325   3 lkdevvlvtggasglgralvdrfvaegarvav....ldksaagleeleaahgd..kvvgvegdvrllddhkeavarcveafg...kldtlipnagiwdystalvdipddrid.eafdevfeinvkgyllavkaalpalvas.rgsviftvsn 143
                 l+++ +++tg  +glg     r  a ga+v +     dk a+ + +l+a  g+  ++ +v+ d   l + +   +r  +a+g    +d+l++nag+       + ip+ r   + f+    +n  g++  v a lp+l  +  g  ++ v+ 
  MMETSP1137-20121227|8228_1 147 LDGRTIVITGANTGLGFESARRLAAAGAHVVItarsYDKGAEAISRLRALVGEdaQLKSVALDLADLRSVRSFPSRLDAALGagaAVDVLMNNAGV-------MAIPERRTTaDGFERQLGVNHLGHFALVAAMLPYLRRApAGFRVINVAS 291
                 778899************************983333477788999999988752245677766666666666555555555422279999999998.......579999975268**********************986513444444444 PP

>> TIGR01500  sepiapter_red: sepiapterin reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0   7.1e-06    0.0022       3     139 ..     152     280 ..     150     376 .. 0.65

  Alignments for each domain:
  == domain 1    score: 15.2 bits;  conditional E-value: 7.1e-06
   TIGR01500   3 llvtGasrGfGrelaqelakrlkaegsvlvLlaRndeaLkeskaeieaev.salsvdlvsldleaakdvedllkaleesikkeeyerillinnaGtlgdvskrekelsDsknvqkyydsnvtslvvltsellkklkel 139
                 +++tGa  G+G e a++la      g  +v+ aR+ +   e+   + a v ++ +++ v+ldl   + v  +   l +  +       +l+nnaG +    +r+     ++  +++   n     +l + +l  l+ +
  MMETSP1137-20121227|8228_1 152 IVITGANTGLGFESARRLAA----AGAHVVITARSYDKGAEAISRLRALVgEDAQLKSVALDLADLRSVRSFPSRLDAALGAGA-AVDVLMNNAGVMAIPERRTT----ADGFERQLGVNHLGHFALVAAMLPYLRRA 280
                 689***********999998....99**********9999999999976526789999999***99999999999998887654.55678999999887777666....33444444444444444444444444433 PP

>> TIGR02685  pter_reduc_Leis: pteridine reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.1   1.4e-05    0.0043       4      93 ..     152     241 ..     150     258 .. 0.81

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 1.4e-05
   TIGR02685   4 alvtGaakriGrsiavklhqeGyrvvlh...yrrsaeaasslaaelnaera.nsavvvkadlsnsasllssceeiidacfrafGrcdvlvnnas 93 
                  ++tGa   +G   a +l + G +vv+    y + aea s+l a + ++   +s  +  adl  + s++s+     da+  a    dvl+nna 
  MMETSP1137-20121227|8228_1 152 IVITGANTGLGFESARRLAAAGAHVVITarsYDKGAEAISRLRALVGEDAQlKSVALDLADLRSVRSFPSRL----DAALGAGAAVDVLMNNAG 241
                 589***********************9644488899999999998876655145555669999999998885....6666777889******96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (473 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       152  (0.0370551); expected 82.0 (0.02)
Passed bias filter:                      118  (0.0287665); expected 82.0 (0.02)
Passed Vit filter:                        28  (0.00682594); expected 4.1 (0.001)
Passed Fwd filter:                        13  (0.00316919); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.47u 0.16s 00:00:00.63 Elapsed: 00:00:00.76
# Mc/sec: 821.46
//
Query:       MMETSP1137-20121227|8229_1  [L=93]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (93 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        64  (0.0156021); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.15s 00:00:00.31 Elapsed: 00:00:00.30
# Mc/sec: 409.17
//
Query:       MMETSP1137-20121227|8230_1  [L=400]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.6e-59  196.6   0.0    1.3e-58  196.1   0.0    1.1  1  TIGR01258 pgm_1: phosphoglycerate mutase 1 family
    2.6e-19   67.2   0.1    3.5e-13   47.2   0.0    2.2  2  TIGR03162 ribazole_cobC: alpha-ribazole phosphatase
    2.7e-10   37.8   0.1    7.4e-10   36.4   0.0    1.7  2  TIGR03848 MSMEG_4193: probable phosphomutase, MSMEG_4193 family
    1.2e-05   23.0   0.0    6.5e-05   20.7   0.0    1.9  2  TIGR00249 sixA: phosphohistidine phosphatase SixA


Domain annotation for each model (and alignments):
>> TIGR01258  pgm_1: phosphoglycerate mutase 1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  196.1   0.0   1.3e-61   1.3e-58       2     224 ..      83     318 ..      82     323 .. 0.89

  Alignments for each domain:
  == domain 1    score: 196.1 bits;  conditional E-value: 1.3e-61
   TIGR01258   2 klvlvrhGeseWnkenlftGWvdvelsekGkeeakeagkllkee.klefdvaytsllkraiktlnivldeld...qlwlpvkksWrlnerhyGalqGldkaetaekyGeeqvkiwrrsfdvsPpeldekderspkkdrryak.....lkkk.....elPlteslkdtvervlPywedeiapelksgkrvlivahGnslralvkhleklsde.eilelniPtgiPlvyeldeelkpvkk 224
                 kl+lvrhGes Wn  n+ftGW dv l++ G++ a++++++l+ e k + dv+yts+l+ra++t++i++ +l+   ++ + +++ WrlnerhyGal+Gl k e      + ++ ++r + +  Pp ++ +++++++++++y +     ++ +     ++Pltesl+dt +r  P we+e+ p +++g +vl+v h n lral++ ++++sde +++ l +P ++Plvy ++++ +pv++
  MMETSP1137-20121227|8230_1  83 KLILVRHGESTWNMDNKFTGWADVPLTDAGRAGAHRTAQVLRSEfKETVDVLYTSVLERAVETAQIIIASLEshgHQPIELRQRWRLNERHYGALTGLSKRESG--CDDFELFQYRMTLAGRPPAMQPDHPYFTRREAKYVSgellfVDPEplalaDVPLTESLADTCNRCRPVWEKELEPMIRNGVNVLVVGHANQLRALIQCVQQISDErQLMTLGVPNTMPLVYTFEHDGTPVSE 318
                 89***************************************97647789*****************976654211678999*******************9975..456678899*************************76333333333666669***************************************************986489*****************9999875 PP

>> TIGR03162  ribazole_cobC: alpha-ribazole phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.2   0.0   3.4e-16   3.5e-13       1      88 [.      84     181 ..      84     200 .. 0.85
   2 !   17.8   0.0   3.8e-07   0.00039     110     161 ..     237     291 ..     232     303 .. 0.85

  Alignments for each domain:
  == domain 1    score: 47.2 bits;  conditional E-value: 3.4e-16
   TIGR03162   1 lyLiRHgevevnkgkcY.GqtDvpLaekgeeqaaalrekl...edvkfdavvsSplsRcrelAella......eklklpiekddrLrEmdfGdwEgks 88 
                 l+L+RHge  +n  +++ G +DvpL++ g++ a++ ++ l    + ++d +++S l+R+ e+A+++        ++ +++++  rL+E ++G+  g s
  MMETSP1137-20121227|8230_1  84 LILVRHGESTWNMDNKFtGWADVPLTDAGRAGAHRTAQVLrseFKETVDVLYTSVLERAVETAQIIIasleshGHQPIELRQRWRLNERHYGALTGLS 181
                 79***************************9999998888843335678888**************98777765566677799999*******998876 PP

  == domain 2    score: 17.8 bits;  conditional E-value: 3.8e-07
   TIGR03162 110 rvpgGEsvadfsqRveefleelake...ekenvlivtHgGvirallahllglple 161
                  vp  Es+ad  +R+  ++e+ ++    ++ nvl+v+H+  +ral+  +++++ e
  MMETSP1137-20121227|8230_1 237 DVPLTESLADTCNRCRPVWEKELEPmirNGVNVLVVGHANQLRALIQCVQQISDE 291
                 57889***************99998887888****************99999544 PP

>> TIGR03848  MSMEG_4193: probable phosphomutase, MSMEG_4193 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.4   0.0   7.3e-13   7.4e-10       2      90 ..      84     180 ..      83     192 .. 0.84
   2 ?   -2.3   0.0       0.5   5.2e+02     114     159 ..     239     281 ..     231     284 .. 0.61

  Alignments for each domain:
  == domain 1    score: 36.4 bits;  conditional E-value: 7.3e-13
   TIGR03848   2 vllvrhgrstantaktLaGrtpGveLderGreqaaalaerlad...lpiaaivssPlercretveaiaear......glevavderltevdYGdWtGr 90 
                 ++lvrhg st n  ++++G+++ v L++ Gr+ a+++a+ l++    +++ +++s ler+ et++ i++++       +e++   rl+e +YG  tG 
  MMETSP1137-20121227|8230_1  84 LILVRHGESTWNMDNKFTGWAD-VPLTDAGRAGAHRTAQVLRSefkETVDVLYTSVLERAVETAQIIIASLeshghqPIELRQRWRLNERHYGALTGL 180
                 79******************97.****************9985222579999**************99887666533344456678*******99995 PP

  == domain 2    score: -2.3 bits;  conditional E-value: 0.5
   TIGR03848 114 PgGealaevqaravaavreldarleeehgpdavwvavshgDviksv 159
                 P  e+la++  r       ++++le    +++  ++v h++ ++++
  MMETSP1137-20121227|8230_1 239 PLTESLADTCNRCRP---VWEKELEPMIRNGVNVLVVGHANQLRAL 281
                 555555555555432...3556666666667777777777776665 PP

>> TIGR00249  sixA: phosphohistidine phosphatase SixA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.7   0.0   6.3e-08   6.5e-05       3      68 ..      84     154 ..      83     163 .. 0.83
   2 ?   -0.7   0.0      0.23   2.4e+02      87     116 ..     255     283 ..     242     299 .. 0.75

  Alignments for each domain:
  == domain 1    score: 20.7 bits;  conditional E-value: 6.3e-08
   TIGR00249   3 lylmrHGeAkekaa....sDkeRqLtkkGkdeaervaqwLkkag.veldrilvSplvRAeqtaeivadald 68 
                 l l+rHGe   +         + +Lt  G   a+r aq L+ +    +d +++S l RA +ta+i+   l+
  MMETSP1137-20121227|8230_1  84 LILVRHGESTWNMDnkftGWADVPLTDAGRAGAHRTAQVLRSEFkETVDVLYTSVLERAVETAQIIIASLE 154
                 6799***99765543554567899****************9875278******************988776 PP

  == domain 2    score: -0.7 bits;  conditional E-value: 0.23
   TIGR00249  87 vadyleelkeegvksvllvsHlPllgelva 116
                 + + le +  +gv  vl+v+H  +l  l++
  MMETSP1137-20121227|8230_1 255 WEKELEPMIRNGV-NVLVVGHANQLRALIQ 283
                 5556666666665.4899999988877765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (400 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       138  (0.0336421); expected 82.0 (0.02)
Passed bias filter:                      125  (0.0304729); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.31u 0.15s 00:00:00.46 Elapsed: 00:00:00.40
# Mc/sec: 1319.89
//
Query:       MMETSP1137-20121227|8231_1  [L=417]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.022   11.7   0.0      0.034   11.1   0.0    1.2  1  TIGR02438 catachol_actin: catechol 1,2-dioxygenase


Domain annotation for each model (and alignments):
>> TIGR02438  catachol_actin: catechol 1,2-dioxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   8.4e-06     0.034      65      99 ..     229     263 ..     197     273 .. 0.76

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 8.4e-06
   TIGR02438  65 kawlidvGedGewplfldvfveheveevaaerrkG 99 
                  + + +  edG wp+ +d fve + ++v+a++r+ 
  MMETSP1137-20121227|8231_1 229 DDDMGNFDEDGAWPVIIDEFVEWHCDKVKADSRES 263
                 55677889*********************999865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (417 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        88  (0.0214529); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.31u 0.16s 00:00:00.47 Elapsed: 00:00:00.32
# Mc/sec: 1719.98
//
Query:       MMETSP1137-20121227|8232_1  [L=278]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.9e-14   51.8   0.1    3.5e-14   50.9   0.1    1.4  1  TIGR01830 3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase
    2.8e-10   37.9   0.0    4.5e-10   37.2   0.0    1.3  1  TIGR02415 23BDH: acetoin reductases
    8.6e-10   36.3   0.1    5.2e-09   33.8   0.1    2.1  1  TIGR01832 kduD: 2-deoxy-D-gluconate 3-dehydrogenase
    8.6e-09   33.2   0.1    1.9e-08   32.1   0.0    1.5  1  TIGR01829 AcAcCoA_reduct: acetoacetyl-CoA reductase
    1.3e-07   28.9   0.1    2.4e-07   28.1   0.0    1.4  1  TIGR01963 PHB_DH: 3-hydroxybutyrate dehydrogenase
    1.4e-07   29.0   0.0      2e-07   28.4   0.0    1.4  1  TIGR03206 benzo_BadH: 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase
    1.5e-07   28.0   0.0    2.1e-07   27.6   0.0    1.2  1  TIGR02632 RhaD_aldol-ADH: rhamnulose-1-phosphate aldolase/alcohol dehydrogenase
    4.5e-06   23.9   0.0    6.4e-06   23.4   0.0    1.2  1  TIGR03325 BphB_TodD: cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase
     0.0011   16.0   0.0     0.0014   15.6   0.0    1.2  1  TIGR01214 rmlD: dTDP-4-dehydrorhamnose reductase
     0.0017   15.1   0.1     0.0024   14.7   0.0    1.2  1  TIGR03466 HpnA: hopanoid-associated sugar epimerase
     0.0025   15.0   0.0      0.035   11.3   0.0    2.1  2  TIGR01831 fabG_rel: putative 3-oxoacyl-(acyl-carrier-protein) reductase
     0.0036   14.0   0.0     0.0049   13.5   0.0    1.1  1  TIGR01179 galE: UDP-glucose 4-epimerase
     0.0054   14.0   0.1       0.56    7.4   0.1    2.4  2  TIGR01500 sepiapter_red: sepiapterin reductase
     0.0079   13.6   0.0      0.015   12.7   0.0    1.4  1  TIGR01289 LPOR: light-dependent protochlorophyllide reductase
  ------ inclusion threshold ------
      0.011   13.0   0.7       0.28    8.4   0.1    2.3  2  TIGR03971 SDR_subfam_1: oxidoreductase, SDR family
      0.012   13.1   0.0      0.017   12.5   0.0    1.4  1  TIGR01777 yfcH: TIGR01777 family protein


Domain annotation for each model (and alignments):
>> TIGR01830  3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.9   0.1   1.4e-16   3.5e-14       1     195 [.      45     239 ..      45     256 .. 0.77

  Alignments for each domain:
  == domain 1    score: 50.9 bits;  conditional E-value: 1.4e-16
   TIGR01830   1 alvtGasrgiGkaiakklakegakvviterskeekaeelaeelkeagvkaaavkldvsdeeevkelveeveeelgeidilvnnAGitrDk..lllrmkeedwdevikvnLkgvfnvtkavlkkmikkrsGriinissvvgllGnagqan........YaasKaGligltkslakElasrnitvnavaPGfietdmteklsekvkk 195
                 +l+tG++rg+G a++k++ ++ga+vv+  r+++ ++        +     +++ +dv+d+++v ++ +e+e+    +di++nnAG   ++   +  ++ e+  + i++   g  +v+ a  ++   + + +ii i+s +g +      n           s+a     +  l++El +++  v  + PGf +t+mt+kl+e   k
  MMETSP1137-20121227|8232_1  45 VLITGGNRGLGLATVKQMMSDGAEVVVVGRKSSPEL-------DALKPAKIITGCDVTDADAVMKMATELEK---PVDIVINNAGYFMEAkeQVDSLNFEEQLKQINICGLGPLRVSSALYNAKKLAPNAKIIFITSQAGSVEWRKTQNcneggdygHHMSRAACNMAAVLLSEELKQKGFPVLLLHPGFNRTEMTAKLKEVWDK 239
                 69**************************77554433.......33333467889*******99999888776...9*********7655400444444444455555555667899999999999999***********986533222211222211567888888888899***************************997655 PP

>> TIGR02415  23BDH: acetoin reductases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.2   0.0   1.8e-12   4.5e-10       4     212 ..      46     254 ..      44     271 .. 0.76

  Alignments for each domain:
  == domain 1    score: 37.2 bits;  conditional E-value: 1.8e-12
   TIGR02415   4 lvtGaaqGiGkaiaerLakdGfavavadlneetaketakelkekgtkavavkldvsdkseveeaveqaveklGeldvlvnnaGvalvtpileiteeele.klynvnvkgv.lfGiqaaaekfkklkhkGkiinaasiagvegspe.lsayss...tkfavrgltqtaa....keLakkgitvnayaPGivktemreeideklaelagkeigekleefss 212
                 l+tG+ +G+G a ++++  dG +v+v+  +         el++     ++   dv+d ++v ++  +       +d+++nnaG  ++++ +++++ ++e +l ++n+ g     + +a  + kkl  + kii  +s+ag +   + +          +  r+    aa    +eL +kg+ v    PG  +tem+++++e   ++   + +e+ +++ +
  MMETSP1137-20121227|8232_1  46 LITGGNRGLGLATVKQMMSDGAEVVVVGRK------SSPELDALKPAKIITGCDVTDADAVMKMATELE---KPVDIVINNAGY-FMEAKEQVDSLNFEeQLKQINICGLgPLRVSSALYNAKKLAPNAKIIFITSQAGSVEWRKtQNCNEGgdyGHHMSRAACNMAAvllsEELKQKGFPVLLLHPGFNRTEMTAKLKEVWDKEGAVDPSEGAKRVLH 254
                 8*************************9755......4556666667778999****9998877655444...468********6.456667777766651456799999734789999999*****************97655430332222111345566666666644448999*********************9998887777776666666555 PP

>> TIGR01832  kduD: 2-deoxy-D-gluconate 3-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.8   0.1     2e-11   5.2e-09       3     196 ..      40     235 ..      38     245 .. 0.65

  Alignments for each domain:
  == domain 1    score: 33.8 bits;  conditional E-value: 2e-11
   TIGR01832   3 leGkvalvtGantGlGqgiavglaeaGadivgvgiselsetqekvealGrkflslkadladeeaakalvdeaveeagkidilvnnaGiirredavefsekdwddvl.nvnlkavfllsqavak.kllkqGrkgkiiniaslls...f...qGGirvpsyt..asksavaGltkllanewakkginvnaiaPGyletnntealra 196
                 l+G ++l+tG n+GlG + +  + + Ga++v vg+++  e  +              d++d +a   +++ a+e  + +di++nnaG    ++ +++   ++++ l ++n+  +  l  + a  ++ k   ++kii i+s      +   q       y    s+ a    + ll+ e+ +kg  v  + PG+  t+ t++l++
  MMETSP1137-20121227|8232_1  40 LKGLRVLITGGNRGLGLATVKQMMSDGAEVVVVGRKSSPELDAL----KPAKIITGCDVTDADA---VMKMATELEKPVDIVINNAGYFMEAK-EQVDSLNFEEQLkQINICGLGPLRVSSALyNAKKLAPNAKIIFITSQAGsveWrktQNCNEGGDYGhhMSRAACNMAAVLLSEELKQKGFPVLLLHPGFNRTEMTAKLKE 235
                 8999*******************************999986543....3333344567666555...56888999999*********876543.34445555544325777766555444443023333456788888775321112111444444455411455555555666777788888888888888888888877765 PP

>> TIGR01829  AcAcCoA_reduct: acetoacetyl-CoA reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.1   0.0   7.5e-11   1.9e-08       4     193 ..      46     235 ..      44     246 .. 0.75

  Alignments for each domain:
  == domain 1    score: 32.1 bits;  conditional E-value: 7.5e-11
   TIGR01829   4 lvtGglgGiGtaickrlakdGykvvanvapneerakewlqekevegfdvavvkadvssfeeakaavakveaelGpvdvlvnnaGitrdavfkkmtkeqW.eevidtnlnsv..fnvtrpviegmlergfGriinissvnG....lkGqf....GqanysaakaGliGftkalaqegakkgvtvnviaPGyiatemvkavre 193
                 l+tGg +G+G a  k++++dG +vv   +  + +  +++ +k       +++  dv++ ++  ++ +++e    pvd+++nnaG   +a  + +++ ++ e++ ++n+ ++  + v   ++++ +     +ii i+s  G     k q     G   +  ++a     +  l++e  +kg  v  + PG+  tem+++++e
  MMETSP1137-20121227|8232_1  46 LITGGNRGLGLATVKQMMSDGAEVVVVGRKSSPELDALKPAK-------IITGCDVTDADAVMKMATELE---KPVDIVINNAGYFMEAKEQ-VDSLNFeEQLKQINICGLgpLRVSSALYNAKKLAPNAKIIFITSQAGsvewRKTQNcnegGDYGHHMSRAACNMAAVLLSEELKQKGFPVLLLHPGFNRTEMTAKLKE 235
                 89**********************987764444444443333.......346889999998877777665...59*********98776533.33333303444566665533899*******99999*****998755522226777533324555678899999999999************************99886 PP

>> TIGR01963  PHB_DH: 3-hydroxybutyrate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.1   0.0   9.3e-10   2.4e-07       4     142 ..      45     176 ..      42     181 .. 0.80

  Alignments for each domain:
  == domain 1    score: 28.1 bits;  conditional E-value: 9.3e-10
   TIGR01963   4 alvtGaasGiglaiakelaaaGakvvvndleeeaaeaaakeleeaggevlalkadvtkeeeiadlieavaaefgsldiLvnnAG..iqhvapieefptekfekiiavnltsafhtiraalpimkkqgwGriiniasvhglv 142
                 +l+tG + G+gla  k++  +Ga+vvv++ ++        el +     + +  dvt+++++ ++ ++++     +di++nnAG  +   +++++ ++e+  k i++   ++++++ a     k +   +ii i+s  g v
  MMETSP1137-20121227|8232_1  45 VLITGGNRGLGLATVKQMMSDGAEVVVVGRKSSP------ELDALKPAKIITGCDVTDADAVMKMATELE---KPVDIVINNAGyfMEAKEQVDSLNFEEQLKQINICGLGPLRVSSALYNAKKLAPNAKIIFITSQAGSV 176
                 89**************************987544......34444455677899*****98775555554...579********444556779999998888888888889999998888888888899999999988765 PP

>> TIGR03206  benzo_BadH: 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.4   0.0   7.9e-10     2e-07       2     144 ..      41     176 ..      40     238 .. 0.80

  Alignments for each domain:
  == domain 1    score: 28.4 bits;  conditional E-value: 7.9e-10
   TIGR03206   2 kdkvaivtgggggiggaicrrfaeegakvavldlnaeaaekvaaairekggkaeavavditdrasvdaavaaaeealgpvdvlvnnagwdvlkpflktekaew.erliainlt..galymhhavlkgmverkagrivniasdaarv 144
                 k+  +++tgg  g+g a+ +++  +ga+v v+       +k + ++ +         +d+td ++v      a+e   pvd+++nnag+ + ++  + +  ++ e+l  in+   g l +  a+ +      + +i+ i+s+a+ v
  MMETSP1137-20121227|8232_1  41 KGLRVLITGGNRGLGLATVKQMMSDGAEVVVVG------RKSSPELDALKPAKIITGCDVTDADAVMKM---ATELEKPVDIVINNAGYFM-EAKEQVDSLNFeEQLKQINICglGPLRVSSALYNAKKLAPNAKIIFITSQAGSV 176
                 666799***********************9975......455555655555556678*****9998654...455567**********965.444455555541456666765116799999999888888899999999998865 PP

>> TIGR02632  RhaD_aldol-ADH: rhamnulose-1-phosphate aldolase/alcohol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.6   0.0   8.1e-10   2.1e-07     417     558 ..      45     176 ..      38     222 .. 0.77

  Alignments for each domain:
  == domain 1    score: 27.6 bits;  conditional E-value: 8.1e-10
   TIGR02632 417 alvtGgasGiGrevarrlvdeGahvvladldae.aaeavaaelvdkfGadkavalkldvtdeeavkaafaevalayGGvdivvnnaGiavskp..leeteleeWdlnldilatGyflvareaarllrkqglggnlvfiasknavv 558
                 +l+tGg  G+G ++ ++++++Ga vv++  ++  +++a     +      + +    dvtd +av ++  e       vdiv+nnaG ++ ++  +++ + ee  ++++i   G   v+  a    +k +  ++++fi+s+ + v
  MMETSP1137-20121227|8232_1  45 VLITGGNRGLGLATVKQMMSDGAEVVVVGRKSSpELDAL----K-----PAKIITGCDVTDADAVMKMATELEK---PVDIVINNAGYFMEAKeqVDSLNFEEQLKQINICGLGPLRVSS-ALYNAKKLAPNAKIIFITSQAGSV 176
                 689***********************9986544123322....2.....23344568*********99888776...6*********998655114555577777889999999988885.77788999999********97654 PP

>> TIGR03325  BphB_TodD: cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.4   0.0   2.5e-08   6.4e-06       4      98 ..      41     129 ..      39     178 .. 0.65

  Alignments for each domain:
  == domain 1    score: 23.4 bits;  conditional E-value: 2.5e-08
   TIGR03325   4 kdevvlvtggasglgralvdrfvaegarvavldksaagleeleaahgdkvvgvegdvrllddhkeavarcveafgk.ldtlipnagiwdystalvd 98 
                 k+  vl+tgg  glg a v++++++ga v v+ + +    el+a +++k+++   dv       +av +   ++ k +d++i+nag +  + + vd
  MMETSP1137-20121227|8232_1  41 KGLRVLITGGNRGLGLATVKQMMSDGAEVVVVGRKS--SPELDALKPAKIIT-GCDVTD----ADAVMKMATELEKpVDIVINNAGYFMEAKEQVD 129
                 56679*************************998754..35777888899886.456643....345555555555548999999997765555554 PP

>> TIGR01214  rmlD: dTDP-4-dehydrorhamnose reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   5.6e-06    0.0014       1      61 [.      44     121 ..      44     159 .. 0.86

  Alignments for each domain:
  == domain 1    score: 15.6 bits;  conditional E-value: 5.6e-06
   TIGR01214   1 rilitGakgqlgreLveqlskegsevvaltrs...............qldledpealeellre.ikP.dvvvntaAyt 61 
                 r+litG++  lg + v+q+ ++g evv++ r+                +d++d++a++++  e +kP d+v+n a y 
  MMETSP1137-20121227|8232_1  44 RVLITGGNRGLGLATVKQMMSDGAEVVVVGRKsspeldalkpakiitGCDVTDADAVMKMATElEKPvDIVINNAGYF 121
                 79***********************99999999*************99***********99873467799****9985 PP

>> TIGR03466  HpnA: hopanoid-associated sugar epimerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0   9.2e-06    0.0024       2      61 ..      44     103 ..      43     136 .. 0.85

  Alignments for each domain:
  == domain 1    score: 14.7 bits;  conditional E-value: 9.2e-06
   TIGR03466   2 kvlvtGatGFvGsavvrllleeGeevrvlvrktsdrrnleeldvEiveG.dlkdeaslkka 61 
                 +vl+tG++  +G a v++++++G+ev v+ rk+s++ +    ++ i++G d++d++++ k 
  MMETSP1137-20121227|8232_1  44 RVLITGGNRGLGLATVKQMMSDGAEVVVVGRKSSPELDA-LKPAKIITGcDVTDADAVMKM 103
                 69*********************************8773.336788887799999887654 PP

>> TIGR01831  fabG_rel: putative 3-oxoacyl-(acyl-carrier-protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.3   0.0   0.00014     0.035       1      38 [.      45      82 ..      45     120 .. 0.84
   2 ?    1.8   0.0      0.11        28     149     196 ..     192     239 ..     160     270 .. 0.78

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 0.00014
   TIGR01831  1 vlvtgasrgigraialklaadgfeiavhyrsdradaee 38
                vl+tg  rg+g a   ++ +dg e+ v  r++  + ++
  MMETSP1137-20121227|8232_1 45 VLITGGNRGLGLATVKQMMSDGAEVVVVGRKSSPELDA 82
                89***********************9988877666555 PP

  == domain 2    score: 1.8 bits;  conditional E-value: 0.11
   TIGR01831 149 ysaakagligatkalavelakrkitvnciapglidtemvaevekdlke 196
                 +  ++a    a+  l+ el ++   v  + pg+  tem a+ ++  ++
  MMETSP1137-20121227|8232_1 192 HHMSRAACNMAAVLLSEELKQKGFPVLLLHPGFNRTEMTAKLKEVWDK 239
                 456777777788889999999999**************9998875554 PP

>> TIGR01179  galE: UDP-glucose 4-epimerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   0.0   1.9e-05    0.0049       1      80 [.      44     120 ..      44     133 .. 0.83

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 1.9e-05
   TIGR01179   1 kiLvtGgaGyiGshvvrqllekgkevvvlDnlskgskealkalekitevklvegdladkekleavle..eekidaviHfaal 80 
                 ++L+tGg   +G  +v+q+++ g+evvv+   s+ + +alk  +      +   d++d+ ++ ++ +  e+ +d vi  a++
  MMETSP1137-20121227|8232_1  44 RVLITGGNRGLGLATVKQMMSDGAEVVVVGRKSSPELDALKPAK-----IITGCDVTDADAVMKMATelEKPVDIVINNAGY 120
                 69***************************************999.....455668888887777666456778888888875 PP

>> TIGR01500  sepiapter_red: sepiapterin reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.4   0.1    0.0022      0.56       3      66 ..      45     109 ..      43     146 .. 0.71
   2 ?    4.3   0.0     0.019       4.9     167     207 ..     195     236 ..     182     266 .. 0.85

  Alignments for each domain:
  == domain 1    score: 7.4 bits;  conditional E-value: 0.0022
   TIGR01500   3 llvtGasrGfGrelaqelakrlkaegsvlvLlaRn....deaLkeskaeieae.vsalsvdlvsldlea 66 
                 +l+tG  rG+G +  +++ +    +g  +v+++R     ++aLk +k   + + ++a  v +++ +le+
  MMETSP1137-20121227|8232_1  45 VLITGGNRGLGLATVKQMMS----DGAEVVVVGRKsspeLDALKPAKIITGCDvTDADAVMKMATELEK 109
                 699********987777666....999999999962222466666665555431344556666666655 PP

  == domain 2    score: 4.3 bits;  conditional E-value: 0.019
   TIGR01500 167 skaaRdmffqvLaleek.edvkvLnYapGvlDtdmqsqvree 207
                 s+aa +m    L+ e k + + vL   pG   t+m+ + +e 
  MMETSP1137-20121227|8232_1 195 SRAACNMAAVLLSEELKqKGFPVLLLHPGFNRTEMTAKLKEV 236
                 89******999**9999889****************998763 PP

>> TIGR01289  LPOR: light-dependent protochlorophyllide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.7   0.0   5.8e-05     0.015       6     102 ..      45     130 ..      41     182 .. 0.74

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 5.8e-05
   TIGR01289   6 viitgassglglaaakalvekgkwhvvmacrdlekaekaakslglpkdsytilkldlasldsvrkfveqfresgrsldalvcnaavylpllkeplfs 102
                 v+itg   glgla+ k +++ g   vv+  r+      ++ +l   k +  i   d++  d+v k+ +   e+++++d+++ n a y+  +ke + s
  MMETSP1137-20121227|8232_1  45 VLITGGNRGLGLATVKQMMSDG-AEVVVVGRK------SSPELDALKPAKIITGCDVTDADAVMKMAT---ELEKPVDIVINN-AGYFMEAKEQVDS 130
                 89********************.788887774......445566666677888999999999999876...578999976655.5566677776554 PP

>> TIGR03971  SDR_subfam_1: oxidoreductase, SDR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   0.1    0.0011      0.28       2      33 ..      41      72 ..      40      79 .. 0.90
   2 ?    2.9   0.0     0.053        14      82     109 ..      99     126 ..      86     242 .. 0.60

  Alignments for each domain:
  == domain 1    score: 8.4 bits;  conditional E-value: 0.0011
   TIGR03971  2 eGkvalitGaarGqGraeavrlaaeGadiiai 33
                +G   litG  rG G a   ++ ++Ga+++++
  MMETSP1137-20121227|8232_1 41 KGLRVLITGGNRGLGLATVKQMMSDGAEVVVV 72
                666789***********************986 PP

  == domain 2    score: 2.9 bits;  conditional E-value: 0.053
   TIGR03971  82 avveegveefGrldvvvanaGvlsygra 109
                 av++ + e    +d+v++naG    ++ 
  MMETSP1137-20121227|8232_1  99 AVMKMATELEKPVDIVINNAGYFMEAKE 126
                 4455555555569999999997765543 PP

>> TIGR01777  yfcH: TIGR01777 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   6.6e-05     0.017       1      69 [.      45     122 ..      45     184 .. 0.81

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 6.6e-05
   TIGR01777   1 vlitGgtGliGralveelekkghevviltrskekekeekkesakevaee...........aeeealegvdavinLaGepi 69 
                 vlitGg+  +G a v+++ ++g evv++ r+++ e ++ k  ak + +            +++e  + vd+vin aG  +
  MMETSP1137-20121227|8232_1  45 VLITGGNRGLGLATVKQMMSDGAEVVVVGRKSSPELDALK-PAKII-TGcdvtdadavmkMATELEKPVDIVINNAGYFM 122
                 79****9999*********************997776663.33222.22244555666555555788999****999755 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (278 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       180  (0.043881); expected 82.0 (0.02)
Passed bias filter:                      157  (0.038274); expected 82.0 (0.02)
Passed Vit filter:                        29  (0.00706972); expected 4.1 (0.001)
Passed Fwd filter:                        16  (0.00390054); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              16  [number of targets reported over threshold]
# CPU time: 0.39u 0.15s 00:00:00.54 Elapsed: 00:00:00.45
# Mc/sec: 815.40
//
Query:       MMETSP1137-20121227|8234_1  [L=199]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (199 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        89  (0.0216967); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.16s 00:00:00.36 Elapsed: 00:00:00.60
# Mc/sec: 437.76
//
Query:       MMETSP1137-20121227|8235_1  [L=490]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (490 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        89  (0.0216967); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.16s 00:00:00.49 Elapsed: 00:00:00.91
# Mc/sec: 710.71
//
Query:       MMETSP1137-20121227|8237_1  [L=135]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (135 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        34  (0.00828864); expected 82.0 (0.02)
Passed bias filter:                       34  (0.00828864); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.13s 00:00:00.29 Elapsed: 00:00:00.53
# Mc/sec: 336.20
//
Query:       MMETSP1137-20121227|8238_1  [L=645]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (645 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       111  (0.02706); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.16s 00:00:00.56 Elapsed: 00:00:00.59
# Mc/sec: 1442.93
//
Query:       MMETSP1137-20121227|8239_1  [L=550]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (550 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       110  (0.0268162); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.15s 00:00:00.50 Elapsed: 00:00:00.52
# Mc/sec: 1396.04
//
Query:       MMETSP1137-20121227|8240_1  [L=370]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (370 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       117  (0.0285227); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.18s 00:00:00.44 Elapsed: 00:00:00.35
# Mc/sec: 1395.31
//
Query:       MMETSP1137-20121227|8242_1  [L=277]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.9e-09   34.0   0.0    3.2e-09   33.3   0.0    1.2  1  TIGR02956 TMAO_torS: TMAO reductase sytem sensor TorS
    3.4e-09   34.1   0.0    8.8e-07   26.2   0.0    2.1  2  TIGR02875 spore_0_A: sporulation transcription factor Spo0A
    4.7e-07   27.5   0.0      2e-06   25.4   0.0    1.8  2  TIGR01387 cztR_silR_copR: heavy metal response regulator
    5.1e-05   20.5   0.0    7.3e-05   20.0   0.0    1.1  1  TIGR02154 PhoB: phosphate regulon transcriptional regulatory protein PhoB
    0.00019   18.2   0.1    0.00029   17.6   0.0    1.2  1  TIGR01818 ntrC: nitrogen regulation protein NR(I)


Domain annotation for each model (and alignments):
>> TIGR02956  TMAO_torS: TMAO reductase sytem sensor TorS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.3   0.0   3.9e-12   3.2e-09     675     820 ..     111     267 ..     100     274 .. 0.82

  Alignments for each domain:
  == domain 1    score: 33.3 bits;  conditional E-value: 3.9e-12
   TIGR02956 675 cFafelplergkkaeksatkevidvpparvLlvEDNevnamvaqglleklGh.kvtlaesgksAleclee....kaFDlallDinLpDtdGvtLlkqLkeleeake.....elkfiavsAhvfnedv.ekylaagFdgflaKPlsekqLvatlakil 820
                    ++ ple + +a++   + + ++     L+v+D ++ + ++q++ e+ G   vt+a +g++A + l +    ++  l+++D+++p  dG + ++ ++  e ++      +l +i+vs    ++   ++ ++ag d++l KP+++++L + l+++ 
  MMETSP1137-20121227|8242_1 111 HPLIDAPLECTTEAAEMPMQLQXFLSFGSSLIVDDCPMMQWLTQAMFEEWGAtAVTVASDGQEAVNILCQaaghEQSWLVIMDVQMPVLDGFEATRVIRDWERSQRiqprdALVIIGVSGDGDEDACgSSAIDAGMDAMLSKPVKHDELLHCLNEVA 267
                 555566666655555555557777888899*********************736999*******987755334456679**********************99988889855*********98887746789********************99875 PP

>> TIGR02875  spore_0_A: sporulation transcription factor Spo0A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.9   0.0    0.0017       1.4      30      69 ..      20      63 ..       5      72 .. 0.80
   2 !   26.2   0.0   1.1e-09   8.8e-07      16     122 ..     150     267 ..     139     276 .. 0.71

  Alignments for each domain:
  == domain 1    score: 5.9 bits;  conditional E-value: 0.0017
   TIGR02875 30 vvGvaknGvealelike....kkpdvvvldiimpyldGlgvlek 69
                 + va +G+ea++l+ +    ++  +v +d+ mp ld    ++k
  MMETSP1137-20121227|8242_1 20 AITVASDGQEAVDLLCQpevyERSWLVFMDMQMPVLDREVAFDK 63
                5889**********9873333467799*********97666665 PP

  == domain 2    score: 26.2 bits;  conditional E-value: 1.1e-09
   TIGR02875  16 ellkeylaaqedlevvGvaknGvealelike....kkpdvvvldiimpyldGlgvleklaeielka..kpk....vlllsavGqek.itkravelGadyyvlkpfdleilaarirqla 122
                 + l + + +      v va +G+ea++++ +    ++  +v++d+ mp ldG+     +++ e+++  +p+    ++ +s  G e+     a++ G d  + kp+  + l + + ++a
  MMETSP1137-20121227|8242_1 150 QWLTQAMFEEWGATAVTVASDGQEAVNILCQaaghEQSWLVIMDVQMPVLDGFEATRVIRDWERSQriQPRdalvIIGVSGDGDEDaCGSSAIDAGMDAMLSKPVKHDELLHCLNEVA 267
                 44444444555567899***********97623336788*************998888877665431267655323335666766516789**************9998887777766 PP

>> TIGR01387  cztR_silR_copR: heavy metal response regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.0      0.23   1.9e+02      25      64 ..      21      64 ..       9      85 .. 0.70
   2 !   25.4   0.0   2.4e-09     2e-06       3     111 ..     142     264 ..     140     275 .. 0.68

  Alignments for each domain:
  == domain 1    score: -0.6 bits;  conditional E-value: 0.23
   TIGR01387 25 vdivsnGrdGlhlaek.ddyd...liildvmlpgldGwevlkal 64
                + ++s+G++ + l  + + y+   l+ +d+++p ld    +++l
  MMETSP1137-20121227|8242_1 21 ITVASDGQEAVDLLCQpEVYErswLVFMDMQMPVLDREVAFDKL 64
                67788888888765441556655589999999999876555555 PP

  == domain 2    score: 25.4 bits;  conditional E-value: 2.4e-09
   TIGR01387   3 vvedeqktaeylqqGlses.G.yvvdivsnGrdGlhl....aekddydliildvmlpgldGwevlkalr...esaketp....vllltardevadkv..kGlelGaddylvkpfefaellarvr 111
                 +v d+    ++l+q + e+ G   v ++s+G++ +++    a +++  l+i+dv++p ldG+e  + +r   +s++ +p    v++  + d  +d      ++ G d  l kp +  ell  + 
  MMETSP1137-20121227|8242_1 142 IV-DDCPMMQWLTQAMFEEwGaTAVTVASDGQEAVNIlcqaAGHEQSWLVIMDVQMPVLDGFEATRVIRdweRSQRIQPrdalVIIGVSGDGDEDACgsSAIDAGMDAMLSKPVKHDELLHCLN 264
                 44.445567899999988744257999*****9976422227788899**************98888772223444344333244444445455544225699***************997655 PP

>> TIGR02154  PhoB: phosphate regulon transcriptional regulatory protein PhoB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   0.0   8.9e-08   7.3e-05       6     118 ..     141     265 ..     138     274 .. 0.77

  Alignments for each domain:
  == domain 1    score: 20.0 bits;  conditional E-value: 8.9e-08
   TIGR02154   6 lvvedeeairellaynlekegye.vveaedaeealalike....elPdlilldWmlpgtsGielarrlrkeeetrei.P.....iimltargeeedr.vrgletGaddyvvkPfspkellarika 118
                 l+v+d + ++ l + ++e+ g + v+ a+d++ea++++ +    e+  l+++d  +p   G e +r +r+ e+ + i P     ii ++  g+e+ +  +++++G d  + kP    ell  ++ 
  MMETSP1137-20121227|8242_1 141 LIVDDCPMMQWLTQAMFEEWGATaVTVASDGQEAVNILCQaaghEQSWLVIMDVQMPVLDGFEATRVIRDWERSQRIqPrdalvIIGVSGDGDEDACgSSAIDAGMDAMLSKPVKHDELLHCLNE 265
                 899999999999999999988761556899****98876511114567**************9988888777665543133322788888999988734689****************9976655 PP

>> TIGR01818  ntrC: nitrogen regulation protein NR(I)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.0   3.5e-07   0.00029       2     111 ..     141     264 ..     140     275 .. 0.67

  Alignments for each domain:
  == domain 1    score: 17.6 bits;  conditional E-value: 3.5e-07
   TIGR01818   2 lvvdddrsirtvlekalaeaglevrtf.dnaasvl....ralareqpdllitdvrmPgedgldllkkik......krrPk..lpvivmsahsdldaa.vkayqrGafeylpkPfdldeavalve 111
                 l+vdd   ++++ +  ++e g +  t+  ++++++    +a ++eq+ l+i dv+mP  dg++  + i+      +++P+  l +i +s   d da+  +a++ G    l+kP   de++   +
  MMETSP1137-20121227|8242_1 141 LIVDDCPMMQWLTQAMFEEWGATAVTVaSDGQEAVnilcQAAGHEQSWLVIMDVQMPVLDGFEATRVIRdwersqRIQPRdaLVIIGVSGDGDEDACgSSAIDAGMDAMLSKPVKHDELLHCLN 264
                 689999999998888888877765554145555540111556678999**************9877665222221567762244444566666655425788999999******9999986554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (277 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        65  (0.0158459); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.27u 0.14s 00:00:00.41 Elapsed: 00:00:00.39
# Mc/sec: 937.46
//
Query:       MMETSP1137-20121227|8243_1  [L=221]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (221 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        35  (0.00853242); expected 82.0 (0.02)
Passed bias filter:                       29  (0.00706972); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.15s 00:00:00.32 Elapsed: 00:00:00.32
# Mc/sec: 911.55
//
Query:       MMETSP1137-20121227|8244_1  [L=361]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        0.9    4.9  41.9       0.32    6.4  16.4    1.9  1  TIGR02168 SMC_prok_B: chromosome segregation protein SMC
        2.3    4.2   8.3        2.9    3.9   5.8    1.1  1  TIGR00934 2a38euk: potassium uptake protein, Trk family
        3.1    3.1  32.7        8.6    1.6  22.7    1.6  1  TIGR02169 SMC_prok_A: chromosome segregation protein SMC


Domain annotation for each model (and alignments):
>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4  16.4   0.00023      0.32     316     485 ..     171     342 ..     165     355 .. 0.77

  Alignments for each domain:
  == domain 1    score: 6.4 bits;  conditional E-value: 0.00023
   TIGR02168 316 keleeleeqleeleskkeeleeelaeleeeleelkeelesleaeleeaeaeleelesrleeleeeleelrsevaeleeqlaslnaelerleaeleqleerrerlkqeieelekkleea..eaelkelqeeleeleeeleeleeelerleealeeleeeleeaeqalqkaeee 485
                 +el+++ ++++++  ++e+   e+a+le+  +e ++e +++ ++ +eae +++e  ++ +++  ++e+lr+++ ++e+   +++ e++ l    ++l+ +++ +++ i el  +  ++   a+l++lq+++++le+  eel  e++++e+a  e++ e +++   +q++++ 
  MMETSP1137-20121227|8244_1 171 EELQAAVAERDTAHMDLERVHVEKAALENAAQESQQERDAAVDARQEAEGARAEXVAARDAALVQIEALRADIVDVERVNGQQRTEINALTLLATRLDYELHAAQAAIDELLPSGPQVaqVAQLHALQNQVTKLEQLMEELLDEKKAAETARDEARLERDANLVMVQALQST 342
                 4556666777888888888888999999999999999999999999999999999999999999999999999999999999999999999999999999999999998888765444115688888899999988888888888888888888777776665555555444 PP

>> TIGR00934  2a38euk: potassium uptake protein, Trk family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   5.8    0.0021       2.9     218     376 ..      62     216 ..      37     277 .. 0.63

  Alignments for each domain:
  == domain 1    score: 3.9 bits;  conditional E-value: 0.0021
   TIGR00934 218 sadesisslrfdeskekkkstrvpsekfakrresrdidpedlyrsimmlqekheatakirdkiseanslaaesdees.sesrriqekikrrlstssieknsqqnltrlaktksfddskavrlersktidraeasdleeldrakdfqkmveknvkaakrkk 376
                 ++d++++    d+  +  ++++     f +++e   +++++++rs   l + +ea ++ r++ + a++ a + ++ +  +   ++  ++   sts  +++++ +l+ la +++++  +a+ +er++     e+  +e+ + ++  q++ ++   a   ++
  MMETSP1137-20121227|8244_1  62 AHDQQVQ----DQHTRVASNHHYVRILFLPQIERLLLTFSEVERSCVDLRNDKEAASHARQEAEAARAEAVHARDAAlVQIEALRADVRETESTSRQQRTENIALNLLATSRVEE-LQAAVAERDTAHMDLERVHVEKAALENAAQESQQERDAAVDARQ 216
                 2222222....3333333334444455778999999******************9999999966666655544443335556677777777777777777655555555444444.56666666666666666666666655555555444333333333 PP

>> TIGR02169  SMC_prok_A: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6  22.7    0.0063       8.6     687     975 ..      49     343 ..      40     348 .. 0.65

  Alignments for each domain:
  == domain 1    score: 1.6 bits;  conditional E-value: 0.0063
   TIGR02169 687 Lereleslqselrriekrldelssklsdaekkiee.iekeleqleeeeeklkerleeleeklseleeeleekkeelkeleaeieeleeklaklkealedleaelseekieeieeelekle..eevsriearleeieaelnklelekelleeeiqelqeeieeleeqkkeiekeieelkakleeleeeleeleaavreLeeelkdLkkereeleaelrelekkkeeleaeiekkrkr..lkelkaklealeeelseleeev.keeeeepeeelslekvkkelekveeeleaLepvN 975
                 L++ + +l +  +  ++++++ + ++   ++ ++     ++e+l    +++++   +l+++ ++ +++++e+++  +e  +  ++   ++++l++++ + e   ++++ e+i  +l +    ee++   a  + +  +l++ ++ek+ le++ qe q+e++++ + ++e e + +e  a  ++   ++e l+a + + e   ++ + e++ l     +l  + + ++a+i++      +  + a+l+al++++++le+ + +   e+ ++e   ++ + e+++    ++aL + N
  MMETSP1137-20121227|8244_1  49 LQQMRTELEACSTAHDQQVQDQHTRVASNHHYVRIlFLPQIERLLLTFSEVERSCVDLRNDKEAASHARQEAEAARAEAVHARDAALVQIEALRADVRETESTSRQQRTENIALNLLATSrvEELQAAVAERDTAHMDLERVHVEKAALENAAQESQQERDAAVDARQEAEGARAEXVAARDAALVQIEALRADIVDVERVNGQQRTEINALTLLATRLDYELHAAQAAIDELLPSgpQVAQVAQLHALQNQVTKLEQLMeELLDEKKAAETARDEARLERDANLVMVQALQSTN 343
                 3334444444444444444444444444444444313457777777788888888888888888888888888777777777777788888888888888888888888888776654331134444444445566778888888888888888888888776665555555555555556666678888888888888888888888888888888888888888888887654411445567778888888888887744444444555555556666666666666666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (361 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       342  (0.083374); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.40u 0.20s 00:00:00.60 Elapsed: 00:00:00.51
# Mc/sec: 934.28
//
Query:       MMETSP1137-20121227|8245_1  [L=34]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (34 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        34  (0.00828864); expected 82.0 (0.02)
Passed bias filter:                       33  (0.00804486); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.16s 00:00:00.24 Elapsed: 00:00:00.25
# Mc/sec: 179.51
//
Query:       MMETSP1137-20121227|8246_1  [L=177]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (177 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        67  (0.0163335); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.16s 00:00:00.34 Elapsed: 00:00:00.33
# Mc/sec: 707.94
//
Query:       MMETSP1137-20121227|8248_1  [L=65]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.038   11.6   0.0      0.038   11.6   0.0    1.1  1  TIGR04061 AZL_007950_fam: AZL_007950 family protein


Domain annotation for each model (and alignments):
>> TIGR04061  AZL_007950_fam: AZL_007950 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   9.3e-06     0.038      10      45 ..      14      49 ..       6      64 .. 0.83

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 9.3e-06
   TIGR04061 10 afvrldarLlayWhtLfDvCPrLLkldpPdGleifr 45
                 + + d++++    +L+D+C r L+++ P   ++ r
  MMETSP1137-20121227|8248_1 14 LLEHTDVSFMVDNEALYDICRRNLDIERPTYTNLNR 49
                4568999999999****************9888766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (65 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        42  (0.0102389); expected 82.0 (0.02)
Passed bias filter:                       42  (0.0102389); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.28
# Mc/sec: 306.40
//
Query:       MMETSP1137-20121227|8248_2  [L=65]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (65 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       109  (0.0265724); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.28
# Mc/sec: 295.84
//
Query:       MMETSP1137-20121227|8249_1  [L=348]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (348 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        72  (0.0175524); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.16s 00:00:00.41 Elapsed: 00:00:00.35
# Mc/sec: 1312.35
//
Query:       MMETSP1137-20121227|8250_1  [L=266]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      1e-31  107.4   0.3    3.4e-31  105.7   0.0    1.8  2  TIGR03330 SAM_DCase_Bsu: S-adenosylmethionine decarboxylase proenzyme


Domain annotation for each model (and alignments):
>> TIGR03330  SAM_DCase_Bsu: S-adenosylmethionine decarboxylase proenzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  105.7   0.0   8.3e-35   3.4e-31       3      87 ..      60     143 ..      58     154 .. 0.95
   2 ?   -0.8   0.0     0.098     4e+02      39      72 ..     185     220 ..     155     223 .. 0.61

  Alignments for each domain:
  == domain 1    score: 105.7 bits;  conditional E-value: 8.3e-35
   TIGR03330   3 lGkhllvdlygvdeekledeelieevlleaakaagatlvevafhkfspqGvsgvvvlaESHisiHTwpEkgyaavDvftCgdtvd 87 
                 +G+h ++++++ ++++l+ +++++++ll+aaka ++t+v   fh f  qGvsgvv+++ESH+siHTwpE+gyaa+D+ftCg+ v 
  MMETSP1137-20121227|8250_1  60 MGTHAILEVQQASFSTLNSTRRVRDALLSAAKAGDLTVVGDLFHAFPVQGVSGVVLVSESHLSIHTWPEYGYAAIDIFTCGH-VG 143
                 8********************************************************************************9.54 PP

  == domain 2    score: -0.8 bits;  conditional E-value: 0.098
   TIGR03330  39 tlvevafhkfspqGvsgvvvlaESHi..siHTwpEk 72 
                  +++   h+f     + + v++E H   +i Tw ++
  MMETSP1137-20121227|8250_1 185 DVCQGVQHEFAGLWSAIACVISELHAgeAILTWIDR 220
                 455555566655545555677777754466677554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (266 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       105  (0.0255973); expected 82.0 (0.02)
Passed bias filter:                      104  (0.0253535); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.25u 0.16s 00:00:00.41 Elapsed: 00:00:00.37
# Mc/sec: 948.89
//
Query:       MMETSP1137-20121227|8251_1  [L=318]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0071   13.9   0.6       0.29    8.7   0.0    2.5  2  TIGR02098 MJ0042_CXXC: MJ0042 family finger-like domain


Domain annotation for each model (and alignments):
>> TIGR02098  MJ0042_CXXC: MJ0042 family finger-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    3.0   0.1    0.0043        18       3       9 ..     244     250 ..     242     257 .. 0.78
   2 !    8.7   0.0   7.2e-05      0.29       3      11 ..     281     289 ..     279     299 .. 0.80

  Alignments for each domain:
  == domain 1    score: 3.0 bits;  conditional E-value: 0.0043
   TIGR02098   3 iqCPnCk 9  
                 + CPnC 
  MMETSP1137-20121227|8251_1 244 TACPNCN 250
                 7799995 PP

  == domain 2    score: 8.7 bits;  conditional E-value: 7.2e-05
   TIGR02098   3 iqCPnCkts 11 
                 ++CPnCkt+
  MMETSP1137-20121227|8251_1 281 LTCPNCKTA 289
                 69******7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (318 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       149  (0.0363237); expected 82.0 (0.02)
Passed bias filter:                      141  (0.0343735); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.25u 0.15s 00:00:00.40 Elapsed: 00:00:00.41
# Mc/sec: 1023.72
//
Query:       MMETSP1137-20121227|8253_1  [L=47]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (47 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        60  (0.014627); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.19s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 213.91
//
Query:       MMETSP1137-20121227|8254_1  [L=846]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.5e-14   48.8   0.0    1.2e-13   48.2   0.0    1.1  1  TIGR00717 rpsA: ribosomal protein S1
    2.2e-11   41.6   0.1    7.5e-11   39.9   0.1    1.9  1  TIGR01259 comE: comEA protein
      1e-08   31.9   0.0    4.7e-08   29.7   0.0    2.0  3  TIGR03591 polynuc_phos: polyribonucleotide nucleotidyltransferase
    6.2e-08   29.3   3.0    6.6e-08   29.2   0.0    2.2  3  TIGR02696 pppGpp_PNP: guanosine pentaphosphate synthetase I/polyribonucleotide nucleotidyltransferase
      9e-08   30.0   0.1    2.2e-07   28.7   0.1    1.7  1  TIGR00426 TIGR00426: competence protein ComEA helix-hairpin-helix repeat region
    5.1e-05   19.6   0.0    9.2e-05   18.7   0.0    1.4  1  TIGR02063 RNase_R: ribonuclease R
  ------ inclusion threshold ------
      0.016   12.0   0.0      0.027   11.2   0.0    1.3  1  TIGR00757 RNaseEG: ribonuclease, Rne/Rng family


Domain annotation for each model (and alignments):
>> TIGR00717  rpsA: ribosomal protein S1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.2   0.0   2.1e-16   1.2e-13     182     257 ..     705     785 ..     700     789 .. 0.86

  Alignments for each domain:
  == domain 1    score: 48.2 bits;  conditional E-value: 2.1e-16
   TIGR00717 182 leklkegeevkGvVknitdfgafvdlg.gvdgllhitdlsw....krvkhPseivevgdevkvkvikvDkekkrislslkq 257
                 l+ +++g++++GvV+n+t+fgafvd+g   dgllh ++l       r+ +P+ ++ vg++v+v v++vD +k+++sls++q
  MMETSP1137-20121227|8254_1 705 LSDVSIGSRLRGVVRNVTPFGAFVDVGlKQDGLLHSSELERlpgeARPPEPHAVLRVGQTVTVSVVRVDIAKGQLSLSMRQ 785
                 67899999*****************994479******99753333688899999************************998 PP

>> TIGR01259  comE: comEA protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.9   0.1   1.3e-13   7.5e-11      57     118 ..     540     600 ..     521     602 .. 0.88

  Alignments for each domain:
  == domain 1    score: 39.9 bits;  conditional E-value: 1.3e-13
   TIGR01259  57 ealvnlnkAsleeLqalkGiGpakAkaiieyReenGaFksvddltkvsGiGeksleklkdyv 118
                 e  v +n+As   L+ + G+  a+A ai++ R ++G F s  +l+kv+GiG ks+e+ +  +
  MMETSP1137-20121227|8254_1 540 EVGVDINTASVALLKHVAGLNAARAAAIAAARPAHG-FASRAELKKVKGIGAKSFEQAAGFL 600
                 55799*******************************.9******************877665 PP

>> TIGR03591  polynuc_phos: polyribonucleotide nucleotidyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0      0.34     2e+02     389     409 ..     150     170 ..     147     178 .. 0.80
   2 ?   -2.9   0.0      0.59   3.5e+02     516     542 ..     177     203 ..     169     209 .. 0.84
   3 !   29.7   0.0     8e-11   4.7e-08     614     688 ..     706     785 ..     701     786 .. 0.89

  Alignments for each domain:
  == domain 1    score: -2.1 bits;  conditional E-value: 0.34
   TIGR03591 389 vrspkRReiGHgkLaeralka 409
                 + ++k Re+G g Laer  ++
  MMETSP1137-20121227|8254_1 150 CLAAKARELGFGPLAERVWSQ 170
                 568899***********8765 PP

  == domain 2    score: -2.9 bits;  conditional E-value: 0.59
   TIGR03591 516 lekaleqakegRlhiLdkmekvisepr 542
                 l+ al+ a+++  h+L+ +++ is++ 
  MMETSP1137-20121227|8254_1 177 LDAALAAAHDAEEHVLNVLADKISASS 203
                 6789999**********9999998775 PP

  == domain 3    score: 29.7 bits;  conditional E-value: 8e-11
   TIGR03591 614 aevevgkvyegkvvkiadfgafvellpgkdglvhiSela....eervekvedvlkegdevkvkvleidk.kgrvklsrka 688
                 ++v +g+  +g v ++++fgafv++  ++dgl+h Sel+    e r  + + vl++g++v+v v+ +d  kg+++ls+++
  MMETSP1137-20121227|8254_1 706 SDVSIGSRLRGVVRNVTPFGAFVDVGLKQDGLLHSSELErlpgEARPPEPHAVLRVGQTVTVSVVRVDIaKGQLSLSMRQ 785
                 57899*********************************8333346888999*****************659*****9986 PP

>> TIGR02696  pppGpp_PNP: guanosine pentaphosphate synthetase I/polyribonucleotide nucleotidyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.0   0.0       1.3   7.4e+02     418     432 ..     153     167 ..     152     168 .. 0.89
   2 ?   -0.5   0.2      0.11        67     545     570 ..     177     202 ..     171     210 .. 0.87
   3 !   29.2   0.0   1.1e-10   6.6e-08     647     718 ..     709     781 ..     700     783 .. 0.93

  Alignments for each domain:
  == domain 1    score: -4.0 bits;  conditional E-value: 1.3
   TIGR02696 418 pkrreighgalaera 432
                  k re+g g laer 
  MMETSP1137-20121227|8254_1 153 AKARELGFGPLAERV 167
                 689**********95 PP

  == domain 2    score: -0.5 bits;  conditional E-value: 0.11
   TIGR02696 545 laealkqakdarlaildvlaeaidsp 570
                 l +al+ a+da  ++l+vla+ i + 
  MMETSP1137-20121227|8254_1 177 LDAALAAAHDAEEHVLNVLADKISAS 202
                 6789****************999875 PP

  == domain 3    score: 29.2 bits;  conditional E-value: 1.1e-10
   TIGR02696 647 evgerflgtvvkttafgafvsllpgkdgllhiseirkladgkrvekvedvlsvgekikveiadid.drgklsl 718
                 ++g+r  g v   t+fgafv +   +dgllh se+ +l +  r  + + vl vg+ ++v +  +d  +g+lsl
  MMETSP1137-20121227|8254_1 709 SIGSRLRGVVRNVTPFGAFVDVGLKQDGLLHSSELERLPGEARPPEPHAVLRVGQTVTVSVVRVDiAKGQLSL 781
                 689******99*****************************************************966899998 PP

>> TIGR00426  TIGR00426: competence protein ComEA helix-hairpin-helix repeat region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.7   0.1   3.7e-10   2.2e-07       8      63 ..     543     596 ..     540     602 .. 0.91

  Alignments for each domain:
  == domain 1    score: 28.7 bits;  conditional E-value: 3.7e-10
   TIGR00426   8 vnintAtaeElqkalsGvGakKAeAivaYREeyGrFktvEdlkkvsGiGekslEkn 63 
                 v+intA++  l++ ++G+ a +A Ai a R  +G F +  +lkkv+GiG ks+E+ 
  MMETSP1137-20121227|8254_1 543 VDINTASVALLKH-VAGLNAARAAAIAAARPAHG-FASRAELKKVKGIGAKSFEQA 596
                 89******99988.********************.777778*************86 PP

>> TIGR02063  RNase_R: ribonuclease R
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.0   1.6e-07   9.2e-05     627     709 ..     709     783 ..     700     785 .. 0.84

  Alignments for each domain:
  == domain 1    score: 18.7 bits;  conditional E-value: 1.6e-07
   TIGR02063 627 kiGeefegvissvtsfGlFveLeentieGLvhissLkddyyefdeknlalvGertgkvfrlGdevkvkvvevdkeekkidfel 709
                  iG+++ gv+ +vt fG Fv +   + +GL h s+L+             +      v r+G++v+v vv+vd  ++++ +++
  MMETSP1137-20121227|8254_1 709 SIGSRLRGVVRNVTPFGAFVDVGL-KQDGLLHSSELE-------RLPGEARPPEPHAVLRVGQTVTVSVVRVDIAKGQLSLSM 783
                 69*******************988.99*********9.......22223344456779********************99987 PP

>> TIGR00757  RNaseEG: ribonuclease, Rne/Rng family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   4.5e-05     0.027      25      99 ..     709     773 ..     702     779 .. 0.75

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 4.5e-05
   TIGR00757  25 kvgniykgkvtrvlpslqaaFvdigeekegflhlsdilknseklepaeakreaekkieellkegqevlVQvvkee 99 
                 ++g  ++g v++v p   +aFvd+g +++g+lh s++ +        ea+  +    + +l+ gq+v V vv+ +
  MMETSP1137-20121227|8254_1 709 SIGSRLRGVVRNVTPF--GAFVDVGLKQDGLLHSSELERLPG-----EARPPE---PHAVLRVGQTVTVSVVRVD 773
                 6777889999999995..9*****************986533.....333222...2467888888888887755 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (846 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       187  (0.0455875); expected 82.0 (0.02)
Passed bias filter:                      113  (0.0275475); expected 82.0 (0.02)
Passed Vit filter:                        25  (0.00609459); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.64u 0.19s 00:00:00.83 Elapsed: 00:00:00.68
# Mc/sec: 1642.10
//
Query:       MMETSP1137-20121227|8256_1  [L=600]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
          0 1075.7   0.0          0 1075.5   0.0    1.0  1  TIGR01042 V-ATPase_V1_A: V-type ATPase, A subunit
   1.6e-233  774.2   0.0     2e-233  773.9   0.0    1.0  1  TIGR01043 ATP_syn_A_arch: ATP synthase archaeal, A subunit
    1.9e-48  163.0   0.0    1.9e-37  126.8   0.0    2.1  2  TIGR02546 III_secr_ATP: type III secretion apparatus H+-transporting two-sector ATPase
    1.5e-45  153.4   0.0    4.8e-37  125.4   0.0    2.1  2  TIGR03498 FliI_clade3: flagellar protein export ATPase FliI
    1.7e-45  153.4   0.0    1.5e-34  117.3   0.0    2.1  2  TIGR01026 fliI_yscN: ATPase FliI/YscN family
    2.4e-44  149.8   0.0    7.1e-35  118.5   0.0    2.1  2  TIGR03497 FliI_clade2: flagellar protein export ATPase FliI
    6.1e-44  148.3   0.0    2.5e-35  119.9   0.0    2.1  2  TIGR03496 FliI_clade1: flagellar protein export ATPase FliI
      5e-39  132.2   0.0    1.4e-35  120.8   0.0    2.2  2  TIGR01039 atpD: ATP synthase F1, beta subunit
    2.2e-33  113.3   0.2    1.4e-22   77.7   0.0    2.1  2  TIGR01040 V-ATPase_V1_B: V-type ATPase, B subunit
    1.1e-32  111.2   0.0    1.3e-26   91.1   0.0    2.1  2  TIGR03305 alt_F1F0_F1_bet: alternate F1F0 ATPase, F1 subunit beta
    2.4e-32  109.8   0.2    1.3e-22   77.7   0.0    2.1  2  TIGR01041 ATP_syn_B_arch: ATP synthase archaeal, B subunit
    9.3e-21   71.9   0.1    6.2e-14   49.4   0.0    2.1  2  TIGR00962 atpA: ATP synthase F1, alpha subunit
    1.7e-17   61.2   0.2    7.2e-11   39.3   0.0    2.1  2  TIGR03324 alt_F1F0_F1_al: alternate F1F0 ATPase, F1 subunit alpha


Domain annotation for each model (and alignments):
>> TIGR01042  V-ATPase_V1_A: V-type ATPase, A subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ! 1075.5   0.0         0         0       2     590 ..       4     591 ..       3     592 .. 0.99

  Alignments for each domain:
  == domain 1    score: 1075.5 bits;  conditional E-value: 0
   TIGR01042   2 ygsvkkvsgpvvvaeemagaamyelvrvgheelvgeiirlegdkatiqvyeetagltvgdpvlrtgkplsvelgpgilgnifdgiqrplkaiaeksqsiyiprgvnvealdrekkwefkpkklrvgdhitggdiygvveensllkhkillpprakgtityiapageytveekvlevefdgkkkkysmlqvwpvrsprpvaeklaadtplltgqrvldalfpsvqggttaipgafgcgktvisqslskysnsdvivyvgcgergnemaevlrdfpeltveldgreesimkrttlvantsnmpvaareasiytgitlaeyfrdmgynvsmladstsrwaealreisgrlaempadsgypaylgarlasfyeragrvkclgsperegsvsivgavsppggdfsdpvtsatlgivqvfwgldkklaqrkhfpsvnwlisyskylkaleefyekeypefvelrtkvkeilqeeeeleeivqlvgkdalaesdkitlevaklikedflqqngytkydkfcplyktvkmlrnliafydlakkavektaqddnkitysiikeklgdllyklsslkfedpadgeekikaeyeelaedl 590
                 +g v++vsgpvv+a++m+gaamyelvrvgh++lvgeiirle+dkatiqvyeet+gltvgdpv+ tg+pls++lgpg++g i+dgiqrpl++iae +qsiyiprgv+++al++++ w f p +++vgd itggdiyg v en ++ hk++l+p a+gti+yiap+g+yt+++++l+ ++dgk++ ++m + wpvrsprpv+ekla+d+plltgqr++dalfpsv ggt+a+pgafgcgktvisq+lskysnsd i+yvgcgergnemaevl+dfpelt+ ++g ee+imkrttlvantsnmpvaareasiytgitlaey+rdmg+nv+m+adstsrwaealreisgrlaempadsgypaylgarlasfyer+g+ + lgsp+r+gs+sivgavsppggdfsdpv satlgivqvfwgldkklaqrkhfpsvnwlisyskyl+al+++y+ +yp+f ++rt vkeilq e++l+eivqlvgkd+laesdk++levak+i++d+l+qng++++dk cp+yk+v+m++n++ fy+ a ka+e++++ dnk+t++ +k+++gd +ykl+++kf+ p+dg+e+++a++++l+e++
  MMETSP1137-20121227|8256_1   4 VGGVYSVSGPVVIADKMSGAAMYELVRVGHTKLVGEIIRLEEDKATIQVYEETSGLTVGDPVVCTGQPLSLQLGPGVMGRIYDGIQRPLEKIAELTQSIYIPRGVSTTALNNDISWSFIPLNFKVGDAITGGDIYGEVPENNIITHKLMLKPGAMGTISYIAPKGSYTIDDVILKTKLDGKETGHTMQHFWPVRSPRPVSEKLAGDMPLLTGQRIIDALFPSVLGGTCAVPGAFGCGKTVISQALSKYSNSDCIIYVGCGERGNEMAEVLKDFPELTMVVNGIEETIMKRTTLVANTSNMPVAAREASIYTGITLAEYMRDMGMNVAMMADSTSRWAEALREISGRLAEMPADSGYPAYLGARLASFYERSGKSEMLGSPSRTGSISIVGAVSPPGGDFSDPVCSATLGIVQVFWGLDKKLAQRKHFPSVNWLISYSKYLNALNPWYDANYPDFPPMRTTVKEILQMEDDLTEIVQLVGKDSLAESDKLILEVAKIIRDDYLAQNGFSEHDKTCPFYKSVWMMKNIVDFYKCAVKAIENSTA-DNKVTWNRLKASMGDTIYKLTAQKFQLPSDGKEALVANFTALNEEI 591
                 689********************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************988.8*****************************************9986 PP

>> TIGR01043  ATP_syn_A_arch: ATP synthase archaeal, A subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  773.9   0.0  6.2e-236    2e-233       3     557 ..       5     562 ..       3     585 .. 0.97

  Alignments for each domain:
  == domain 1    score: 773.9 bits;  conditional E-value: 6.2e-236
   TIGR01043   3 GeivrvsGplvvaeglkgakmyevvkvgeekliGeiiriegdkaviqvyeetsGikpgepvestGaplsvelGpGllesiydGvqrpldvlkeksg.afierGvdapaldrdkkwefkpk.vkkGdkvegGdiiGvveetsliehkilvppevegelkeiaeeGdytvedtiavvekdGeeeelkllqkwpvrkkrpvkeklepeeplvtGqrildtlfpiakGGtaaipGpfGsGktvtqqslakwsdaeivvyiGcGerGnemtevleefpeledpktG..kpllertvliantsnmpvaareasiytGitiaeyfrdmGydvalvadstsrwaealreisgrleempgeeGypaylasrlaefyeraGrvktlgseeregsvtvvgavsppGGdfsepvtqntlrivkvfwaldaklaerrhfpainwlqsyslyvdsvedwfaenvdeewrelrdealellqkeaelqeivrlvGsdalpekeklvlevarlireaflkqnafdevdtysspekqvkilkvilkfeeealealekGvpveeilklevkeelarvk 557
                 G +++vsGp+v+a+ ++ga mye+v+vg++kl+Geiir+e+dka+iqvyeetsG+  g+pv+ tG+pls++lGpG++++iydG+qrpl++++e ++  +i rGv+  al++d  w+f p   k Gd ++gGdi G+v+e ++i+hk+++ p   g+++ ia +G+yt++d+i + + dG+e+  ++++ wpvr +rpv ekl  ++pl+tGqri+d+lfp   GGt+a+pG+fG Gktv  q l+k+s+++ ++y+GcGerGnem+evl++fpel     G  + +++rt+l+antsnmpvaareasiytGit+aey rdmG +va++adstsrwaealreisgrl emp++ Gypayl +rla fyer+G+ + lgs++r+gs+++vgavsppGGdfs+pv + tl iv+vfw ld kla+r+hfp++nwl sys y ++++ w+  n  +++  +r ++ e+lq e++l eiv+lvG+d+l+e++kl+leva++ir+++l qn f e d+ +++ k v ++k i++f++ a++a+e+  + ++++  ++k ++  + 
  MMETSP1137-20121227|8256_1   5 GGVYSVSGPVVIADKMSGAAMYELVRVGHTKLVGEIIRLEEDKATIQVYEETSGLTVGDPVVCTGQPLSLQLGPGVMGRIYDGIQRPLEKIAELTQsIYIPRGVSTTALNNDISWSFIPLnFKVGDAITGGDIYGEVPENNIITHKLMLKPGAMGTISYIAPKGSYTIDDVILKTKLDGKETGHTMQHFWPVRSPRPVSEKLAGDMPLLTGQRIIDALFPSVLGGTCAVPGAFGCGKTVISQALSKYSNSDCIIYVGCGERGNEMAEVLKDFPELTMVVNGieETIMKRTTLVANTSNMPVAAREASIYTGITLAEYMRDMGMNVAMMADSTSRWAEALREISGRLAEMPADSGYPAYLGARLASFYERSGKSEMLGSPSRTGSISIVGAVSPPGGDFSDPVCSATLGIVQVFWGLDKKLAQRKHFPSVNWLISYSKYLNALNPWYDANY-PDFPPMRTTVKEILQMEDDLTEIVQLVGKDSLAESDKLILEVAKIIRDDYLAQNGFSEHDKTCPFYKSVWMMKNIVDFYKCAVKAIENSTADNKVTWNRLKASMGDTI 562
                 889********************************************************************************************988*********************769***********************************************************************************************************************************************************99985568*****************************************************************************************************************************************************************9995.99***************************************************************************************9999998877776665544 PP

>> TIGR02546  III_secr_ATP: type III secretion apparatus H+-transporting two-sector ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.2   0.0   7.9e-12   2.5e-09       5     106 ..       3     101 ..       1     116 [. 0.89
   2 !  126.8   0.0   5.9e-40   1.9e-37     110     349 ..     193     447 ..     175     525 .. 0.84

  Alignments for each domain:
  == domain 1    score: 34.2 bits;  conditional E-value: 7.9e-12
   TIGR02546   5 vlgrvtevsgtllka.vlpearvgelclikekekeseleaevvgfeedealLsplgelsglslgseviplgrplsikvgeelLGrvldglGrpldgkkelkak 106
                 ++g v +vsg ++ a ++ +a++ el+++     +++l  e++ +eed+a ++  +e+sgl+ g  v+ +g+pls+++g  ++Gr+ dg+ rpl++  el ++
  MMETSP1137-20121227|8256_1   3 RVGGVYSVSGPVVIAdKMSGAAMYELVRVG----HTKLVGEIIRLEEDKATIQVYEETSGLTVGDPVVCTGQPLSLQLGPGVMGRIYDGIQRPLEKIAELTQS 101
                 678899999987666267899******999....699**********************************************************98887665 PP

  == domain 2    score: 126.8 bits;  conditional E-value: 5.9e-40
   TIGR02546 110 krpldaepPdplsRqkieqplalGvraiDglltvgeGqRiGifaeaGvGkstLlsmiargakadvivlaLiGeRGRevrefiek....el.....geekrkrsvlvvstsdrsslerlkaayvataiaeyfRdqgkkvllllDsltRfaralreigLaaGepparrgyppsvfsslprlleRaGase.......kGsitalYtvLvegddmndpiadevrsilDGhivLsrklaernhyPaiDvlaslsRvlkkvv 349
                  +p++++  +  ++ + + pl +G r+iD+l     G    + ++ G+Gk+ + +++ + +++d i+ +  GeRG e+ e +++    ++     +e  +kr+ lv++ts+ +   r  + y+++++aey Rd g +v ++ Ds +R+a alrei+    e pa  gyp+ + ++l+ + eR+G+se       +Gsi  + +v   g d +dp+   + +i+     L +kla+r+h+P+++ l s s+ l+++ 
  MMETSP1137-20121227|8256_1 193 FWPVRSPR-PVSEKLAGDMPLLTGQRIIDALFPSVLGGTCAVPGAFGCGKTVISQALSKYSNSDCIIYVGCGERGNEMAEVLKDfpelTMvvngiEETIMKRTTLVANTSNMPVAAREASIYTGITLAEYMRDMGMNVAMMADSTSRWAEALREISGRLAEMPADSGYPAYLGARLASFYERSGKSEmlgspsrTGSISIVGAVSPPGGDFSDPVCSATLGIVQVFWGLDKKLAQRKHFPSVNWLISYSKYLNALN 447
                 35554433.3445566799**********************************************************98866532211332222278889************************************************************************************98744444447*******************************************************999875 PP

>> TIGR03498  FliI_clade3: flagellar protein export ATPase FliI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.9   0.0   2.5e-09   7.9e-07      25     102 ..      25     102 ..       5     118 .. 0.85
   2 !  125.4   0.0   1.5e-39   4.8e-37      91     344 ..     180     446 ..     170     513 .. 0.82

  Alignments for each domain:
  == domain 1    score: 25.9 bits;  conditional E-value: 2.5e-09
   TIGR03498  25 lveieaeegkkvlaevvgleedevllmpfeslegvelgaavvveeealevrpeeswlGRvidalgepiDgkgalaege 102
                 + e+ + +++k+++e+++leed+++++ +e+++g  +g+ vv + ++l++++ +  +GR+ d + +p++   +l+++ 
  MMETSP1137-20121227|8256_1  25 MYELVRVGHTKLVGEIIRLEEDKATIQVYEETSGLTVGDPVVCTGQPLSLQLGPGVMGRIYDGIQRPLEKIAELTQSI 102
                 455556666889*********************************************************999998875 PP

  == domain 2    score: 125.4 bits;  conditional E-value: 1.5e-39
   TIGR03498  91 piDgkgalaegeaavpvkaeppaalsRkrveeklktGvrvidlfltlcrGqRlGifaGsGvGkstllsmlaraaaaDvvvialvGeRGRevrefled....dlg.....eeglkrsvvvvatsDesplmRrkaayvalaiaeyfRdqgkdvllllDsvtRfakaqReialaageppvarGYtpsvfselPrLLeRaGpG.....aegkGsitglftvLvdgDdhnePvaDavrgilDGhivldRaiaergryPainvlksvsRlakkv 344
                  +Dgk++ ++ ++  pv+ +p +  ++   + +l tG r+id++ +  +G    +    G Gk+++   l++ ++ D ++    GeRG e+ e+l+d    ++      e  +kr+ +v  ts+ ++ +R+ + y+ +++aey+Rd g +v ++ Ds  R+a+a Rei+    e p+  GY++   + l    eR+G        + +Gsi+ + +v   g d+ +Pv  a+ gi+     ld+++a+r ++P++n l s s+  +  
  MMETSP1137-20121227|8256_1 180 KLDGKETGHTMQHFWPVR-SPRPVSEKLAGDMPLLTGQRIIDALFPSVLGGTCAVPGAFGCGKTVISQALSKYSNSDCIIYVGCGERGNEMAEVLKDfpelTMVvngieETIMKRTTLVANTSNMPVAAREASIYTGITLAEYMRDMGMNVAMMADSTSRWAEALREISGRLAEMPADSGYPAYLGARLASFYERSGKSemlgsPSRTGSISIVGAVSPPGGDFSDPVCSATLGIVQVFWGLDKKLAQRKHFPSVNWLISYSKYLNAL 446
                 567777777777777777.44445556667889*********************************************************9998876554444411111556899999*******************************************************************************8522113357899999999**********************************************987754 PP

>> TIGR01026  fliI_yscN: ATPase FliI/YscN family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.1   0.0   8.6e-12   2.7e-09      22     122 ..       2      98 ..       1     122 [. 0.85
   2 !  117.3   0.0   4.8e-37   1.5e-34     146     421 ..     211     508 ..     179     530 .. 0.79

  Alignments for each domain:
  == domain 1    score: 34.1 bits;  conditional E-value: 8.6e-12
   TIGR01026  22 kvvGrvkkvkgllieakgp.qasvGevclierkgsekkevvaevvgfegekvllmpyeevegveagskvlaknealsvkvgegllGrvldalGkplDekgka 122
                 ++vG v +v g ++ a+ +  a++ e++++      ++++v+e++ +e++k ++  yee++g+++g+ v+ ++++ls+++g g++Gr+ d++ +pl++ ++ 
  MMETSP1137-20121227|8256_1   2 ARVGGVYSVSGPVVIADKMsGAAMYELVRVG-----HTKLVGEIIRLEEDKATIQVYEETSGLTVGDPVVCTGQPLSLQLGPGVMGRIYDGIQRPLEKIAEL 98 
                 5789999999977776654156777777777.....3469********************************************************987654 PP

  == domain 2    score: 117.3 bits;  conditional E-value: 4.8e-37
   TIGR01026 146 vlstGvrsidalltvgkGqrlGifaGsGvGkstLlGmiarateadvnvialiGerGrevkefie.........kdLgeeglkrsvvvvatsDespllrlkgayvataiaeyfrdqGkdvlllmDsvtrfakaqreigLaaGepPatkGytPsvfsllpklleraGasek.......GsitafytvLveGDDlnePiaDevrailDGhivLsralaerglyPaidvlasisrllkaivseekkka..vrkfre.llskykenedLiriGa.YkkGsdkelDkaikklekler..flkqd 421
                  l tG r idal++   G    +    G Gk ++   +++++++d ++    GerG e+ e ++         + + e  +kr+ +v+ ts+ +  +r  + y+++++aey rd G +v+++ Ds  r+a+a rei+  + e Pa  Gy+    + l+ + er+G+se+       Gsi  + +v   G D+++P++ ++ +i+     L+++la+r+++P+++ l s s+ l+a+ +    +      +r  +  +++ ++dL +i +   k s +e Dk i +++k++r  +l+q+
  MMETSP1137-20121227|8256_1 211 PLLTGQRIIDALFPSVLGGTCAVPGAFGCGKTVISQALSKYSNSDCIIYVGCGERGNEMAEVLKdfpeltmvvNGIEETIMKRTTLVANTSNMPVAAREASIYTGITLAEYMRDMGMNVAMMADSTSRWAEALREISGRLAEMPADSGYPAYLGARLASFYERSGKSEMlgspsrtGSISIVGAVSPPGGDFSDPVCSATLGIVQVFWGLDKKLAQRKHFPSVNWLISYSKYLNALNPWYDANYpdFPPMRTtVKEILQMEDDLTEIVQlVGKDSLAESDKLILEVAKIIRddYLAQN 508
                 589********************9999*******************************87654311112221145667779************************************************************************************6543322222399999999999***********************************************9987544433112223321333344444455443313455667777777777777543377775 PP

>> TIGR03497  FliI_clade2: flagellar protein export ATPase FliI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.3   0.0   2.8e-10   8.8e-08       1      97 [.       5      99 ..       5     121 .. 0.87
   2 !  118.5   0.0   2.3e-37   7.1e-35      90     347 ..     181     454 ..     175     530 .. 0.75

  Alignments for each domain:
  == domain 1    score: 29.3 bits;  conditional E-value: 2.8e-10
   TIGR03497  1 Gkvkkvvglvieakgp.kakiGelcsikkkeekkvlaevvgfkeekvlLmPleevegiapgslveatgkklavkvgkellGkvldglGepldekelvk 97
                G v +v+g v+ a+ +  a++ el+++   +++k++ e++ ++e+k+++  +ee++g++ g+ v+ tg++l+++ g  ++G++ dg+ +pl++ ++++
  MMETSP1137-20121227|8256_1  5 GGVYSVSGPVVIADKMsGAAMYELVRV---GHTKLVGEIIRLEEDKATIQVYEETSGLTVGDPVVCTGQPLSLQLGPGVMGRIYDGIQRPLEKIAELT 99
                567888888777766536788899988...7899*********************************************************9865554 PP

  == domain 2    score: 118.5 bits;  conditional E-value: 2.3e-37
   TIGR03497  90 ldekelvkkkeklpleaeppnplkrk.rikdvlevgvkaidglltvGkGqrvGifagsGvGkstllgmiarnakadinviaLvGerGrev....refiekdLgeeG.....lkksvvvvatsdqpallrlkaalvataiaeyfrdqGkkvllmmDsvtrfamaqrevglavgepPttkGytpsvfsllpklleraGkse.......kGsitglytvLvdgDdlnePiaDavrgilDGhivLsreLaeknhyPaidvlksvsrvmeeivseehkel 347
                 ld+ke+ ++ +++   ++p  p++ k     +l +g + id+l+    G    +  + G Gk+++   +++++++d  +    GerG e+    ++f e  +  +G     +k++ +v+ ts++p   r  + ++++++aey+rd G +v +m Ds  r a+a re++    e P+  Gy + + + l+ + er+Gkse       +Gsi  + +v   g d+ +P+  a  gi+     L+++La+++h+P+++ l s s+ ++++ +  + + 
  MMETSP1137-20121227|8256_1 181 LDGKETGHTMQHFWPVRSP-RPVSEKlAGDMPLLTGQRIIDALFPSVLGGTCAVPGAFGCGKTVISQALSKYSNSDCIIYVGCGERGNEMaevlKDFPELTMVVNGieetiMKRTTLVANTSNMPVAAREASIYTGITLAEYMRDMGMNVAMMADSTSRWAEALREISGRLAEMPADSGYPAYLGARLASFYERSGKSEmlgspsrTGSISIVGAVSPPGGDFSDPVCSATLGIVQVFWGLDKKLAQRKHFPSVNWLISYSKYLNALNPWYDANY 454
                 5555555555555444444.44444404456899*******************************************9999*******97222256656555555522222688899*******************************************************************************97633333336999999999999*********************************************99876544443 PP

>> TIGR03496  FliI_clade1: flagellar protein export ATPase FliI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.4   0.0     2e-09   6.2e-07      27      99 ..      29     101 ..       5     122 .. 0.83
   2 !  119.9   0.0     8e-38   2.5e-35      90     341 ..     181     446 ..     172     510 .. 0.86

  Alignments for each domain:
  == domain 1    score: 26.4 bits;  conditional E-value: 2e-09
   TIGR03496  27 eeeegesveaevvgfeeeklllmpleeveglalgakvvlleeekklpvgeellGrvidalgepldgkgaleae 99 
                  +   +++ +e++++ee+k+++  +ee++gl++g+ vv + +  +l++g  ++Gr+ d+  +pl++ ++l+++
  MMETSP1137-20121227|8256_1  29 VRVGHTKLVGEIIRLEEDKATIQVYEETSGLTVGDPVVCTGQPLSLQLGPGVMGRIYDGIQRPLEKIAELTQS 101
                 334567899********************************************************99988776 PP

  == domain 2    score: 119.9 bits;  conditional E-value: 8e-38
   TIGR03496  90 ldgkgaleaeeevsleaepinplkrerieevldvGvrainalltvgkGqrlglfagsGvGKsvLlgmlarateadvvvvaLiGERgREvkefie.........knLgeeglkrsvvvaatadespllrlraaalataiaeyfrdqgkdvLllmDSltRfAmAqReialaiGEppatkgYppsvfaklpkLvEraGng.....kegkGsitafytvLvegddqqdpiadaaraiLDGHivLsRelaeaghyPaidieaSiSRvmkkv 341
                 ldgk + ++ ++    ++p    ++ + + +l +G r i+al++   G   ++  + G GK+v+   l ++++ d+++    GERg E+ e ++         + ++e+ +kr+ +va t++ +   r  + ++ +++aey rd g +v ++ DS +R+A+A Rei+  + E pa  gYp+   a+l+++ Er+G++      +++Gsi+ + +v   g d +dp+  a+ +i+     L+++la++ h+P+++ + S S+ ++++
  MMETSP1137-20121227|8256_1 181 LDGKETGHTMQHFWPVRSPRPVSEKLAGDMPLLTGQRIIDALFPSVLGGTCAVPGAFGCGKTVISQALSKYSNSDCIIYVGCGERGNEMAEVLKdfpeltmvvNGIEETIMKRTTLVANTSNMPVAAREASIYTGITLAEYMRDMGMNVAMMADSTSRWAEALREISGRLAEMPADSGYPAYLGARLASFYERSGKSemlgsPSRTGSISIVGAVSPPGGDFSDPVCSATLGIVQVFWGLDKKLAQRKHFPSVNWLISYSKYLNAL 446
                 6666666666655555555555566667889***********************************************999*******987655111111111456788899999********************************************************************************98444334679******************************************************998865 PP

>> TIGR01039  atpD: ATP synthase F1, beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.1   0.0   0.00034      0.11      40     106 ..      36     101 ..       4     118 .. 0.77
   2 !  120.8   0.0   4.6e-38   1.4e-35      93     421 ..     177     523 ..     163     542 .. 0.84

  Alignments for each domain:
  == domain 1    score: 9.1 bits;  conditional E-value: 0.00034
   TIGR01039  40 lvlevaqhlGddlvraialdstdGlvrglevkdtgkpievpvGkevlGrilnvlGepidekgevkkk 106
                 lv e+  +l +d+      ++t Gl+ g  v+ tg+p+++ +G  v+Gri++ +  p+++  e+ ++
  MMETSP1137-20121227|8256_1  36 LVGEII-RLEEDKATIQVYEETSGLTVGDPVVCTGQPLSLQLGPGVMGRIYDGIQRPLEKIAELTQS 101
                 555554.45666666667899*********************************9999988877665 PP

  == domain 2    score: 120.8 bits;  conditional E-value: 4.6e-38
   TIGR01039  93 lGepidekgevkkkek.lsihrkapsfeeqstkveiletGikvidllapyakGGkiglfGGaGvGktvliqelinniakehsGlsvfaGvGertreGndlylelke.sgvld........kvalvyGqmneppGarlrvaltgltlaeyfrdeegqdvllfidnifrftqaGsevsallGrlpsavGyqptlatemGelqerits.......tkkgsitsvqavyvpaddltdpapattfahldattvlsrkiaelGiypavdpldstsrlldpev.vGeehy....evarevqeilqrykelqdiiailGldelseedklvverarkie.rflsqpffvaevftGspGkyv 421
                 l   +d k++ ++ ++ +++    p  e++  ++ +l tG ++id l p + GG  ++ G  G Gktv+ q l +   ++ s + +++G Ger  e  ++ +++ e + v++        +++lv    n p  ar    +tg+tlaey+rd+   +v ++ d   r+++a  e+s  l  +p+  Gy   l+  + ++ er          +++gsi+ v av  p  d++dp  ++t+  ++    l++k+a+   +p+v+ l s s++l++     +  y     + + v+eilq   +l +i+ ++G d l+e dkl++e a+ i+  +l+q+ f     t    k v
  MMETSP1137-20121227|8256_1 177 LKTKLDGKETGHTMQHfWPVRSPRPVSEKLAGDMPLL-TGQRIIDALFPSVLGGTCAVPGAFGCGKTVISQALSK---YSNSDCIIYVGCGERGNEMAEVLKDFPElTMVVNgieetimkRTTLVANTSNMPVAAREASIYTGITLAEYMRDMGM-NVAMMADSTSRWAEALREISGRLAEMPADSGYPAYLGARLASFYERSGKsemlgspSRTGSISIVGAVSPPGGDFSDPVCSATLGIVQVFWGLDKKLAQRKHFPSVNWLISYSKYLNALNpWYDANYpdfpPMRTTVKEILQMEDDLTEIVQLVGKDSLAESDKLILEVAKIIRdDYLAQNGFSEHDKTCPFYKSV 523
                 5567899988877666488888888888888777765.9******************************999976...46678899**********9999887765233444566666669*******************************976.9******************************************9996431222223689*******************************************************9987541233344222247899***********************************9973699999776665555555555 PP

>> TIGR01040  V-ATPase_V1_B: V-type ATPase, B subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.5   0.1   1.1e-11   3.5e-09       5     101 ..       7      99 ..       4     114 .. 0.90
   2 !   77.7   0.0   4.3e-25   1.4e-22     206     454 ..     287     543 ..     280     555 .. 0.86

  Alignments for each domain:
  == domain 1    score: 33.5 bits;  conditional E-value: 1.1e-11
   TIGR01040   5 vsgvngplvildevkfpkfaeivnlkladgtvrkgqvlevsgekavvqvfegtsgidakkttveftgdilrlpvsedmlgrvfngsgkpidkgpkvl 101
                 v +v+gp+vi d++  + + e+v++     t+  g+++ ++++ka +qv+e tsg+ +   +   tg+ l l +   ++gr+++g  +p++k  ++ 
  MMETSP1137-20121227|8256_1   7 VYSVSGPVVIADKMSGAAMYELVRVG---HTKLVGEIIRLEEDKATIQVYEETSGLTVGDPV-VCTGQPLSLQLGPGVMGRIYDGIQRPLEKIAELT 99 
                 789*******************9985...57889**********************998765.58************************99977765 PP

  == domain 2    score: 77.7 bits;  conditional E-value: 4.3e-25
   TIGR01040 206 engslervtlflnlandptieriitprlalttaeylayekekhvlviltdmssyadalrevsaareevpgrrgfpgymytdlatiyeragrve.....grngsitqipiltmpnddithpipdltgyitegqiyvdrqlhnrqiyppinvlpslsrlmksai.gegmtrkdhsdvsnqlyakyaigkdvaamkavvgeealssedllyleflekfekkfiaqgayesrt.ifesldlawellri..fpkellkripkk 454
                 e+  ++r+tl  n +n p   r  +    +t aey+  ++++ v ++    s +a+alre+s    e+p+  g+p y+ + la+ yer+g+ e      r gsi+ +  ++ p  d + p+   t  i +    +d++l +r+ +p +n l s s+ + +     +    d   +   +     + +d++ +  +vg+++l++ d+l le  + +  +++aq+ + + +      +  w +  i  f k  +k i+++
  MMETSP1137-20121227|8256_1 287 EETIMKRTTLVANTSNMPVAAREASIYTGITLAEYMR-DMGMNVAMMADSTSRWAEALREISGRLAEMPADSGYPAYLGARLASFYERSGKSEmlgspSRTGSISIVGAVSPPGGDFSDPVCSATLGIVQVFWGLDKKLAQRKHFPSVNWLISYSKYLNALNpWYDANYPDFPPMRTTVKEILQMEDDLTEIVQLVGKDSLAESDKLILEVAKIIRDDYLAQNGFSEHDkTCPFYKSVWMMKNIvdFYKCAVKAIENS 543
                 55689******************************95.899999999999999*************************************9875544469*************************999988888**********************997644135677889***************************************************988765413333444455544423445555666555 PP

>> TIGR03305  alt_F1F0_F1_bet: alternate F1F0 ATPase, F1 subunit beta
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.0   6.5e-07   0.00021       2      98 ..       6      99 ..       5     118 .. 0.81
   2 !   91.1   0.0   4.2e-29   1.3e-26      88     407 ..     178     515 ..     161     538 .. 0.83

  Alignments for each domain:
  == domain 1    score: 18.0 bits;  conditional E-value: 6.5e-07
   TIGR03305  2 kvvavrgsivdvrfeeelpalysvlkagrekevvvevlaqldakkvrgialtateglargmavkdsgaplkapvgkeilsrvfdvfgntidrreslk 98
                 v +v g +v +  +    a+y ++++g ++++v e++ +l+++k        t gl+ g++v  +g+pl   +g  +++r++d + +++++  +l+
  MMETSP1137-20121227|8256_1  6 GVYSVSGPVVIA-DKMSGAAMYELVRVG-HTKLVGEII-RLEEDKATIQVYEETSGLTVGDPVVCTGQPLSLQLGPGVMGRIYDGIQRPLEKIAELT 99
                577777877643.34556799*******.667777875.68888888888999*******************************9999998766554 PP

  == domain 2    score: 91.1 bits;  conditional E-value: 4.2e-29
   TIGR03305  88 gntidrreslkdvkwrsvhqappaltrrssksevfetgikaidvlvplerggkaglfggagvgktvlltelihnlvsqeegvslfcgigercregeelyremke.....ag....vldntvmvfgqmneppgarfrvglaaltmaeyfrddekkdvlllidnifrfiqagsevsgllgqlpsrlgyqptlgtelaeleeriat.......tedaaitsiqavyvpaddftdpaavhtfshlsaslvlsrkraseglypaidplkstsklatp.sivgerhyk....larevrrvlaqyeelkdiiamlgleelskedrrvvararrl.erfltqpfftteqf 407
                    +d +e+ + +++    ++p  ++++ +    + tg ++id l p   gg   + g  g gktv+   l +     ++   ++ g ger  e  e+ +++ e      g    ++++t +v    n p  ar    ++ +t+aey+rd    +v ++ d   r+ +a  e+sg l ++p+  gy   lg+ la++ er  +       +++++i  + av  p  df+dp    t+  +     l +k a    +p+++ l s sk ++  +   +  y     +   v+++l   ++l +i+ ++g + l++ d+ +++ a+ + + +l+q  f+ ++ 
  MMETSP1137-20121227|8256_1 178 KTKLDGKETGHTMQHFWPVRSPRPVSEKLAGDMPLLTGQRIIDALFPSVLGGTCAVPGAFGCGKTVISQALSKY---SNSDCIIYVGCGERGNEMAEVLKDFPEltmvvNGieetIMKRTTLVANTSNMPVAAREASIYTGITLAEYMRD-MGMNVAMMADSTSRWAEALREISGRLAEMPADSGYPAYLGARLASFYERSGKsemlgspSRTGSISIVGAVSPPGGDFSDPVCSATLGIVQVFWGLDKKLAQRKHFPSVNWLISYSKYLNAlNPWYDANYPdfppMRTTVKEILQMEDDLTEIVQLVGKDSLAESDKLILEVAKIIrDDYLAQNGFSEHDK 515
                 567899999999999999999*******999999********************************87776553...3445679**************99976521111331111455677899999**********************7.6789*******************************************99755111111256899999*************************************************98875233445555322336789******************************9999876356888877766555 PP

>> TIGR01041  ATP_syn_B_arch: ATP synthase archaeal, B subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.0   0.2   1.3e-10     4e-08       5      99 ..       7      97 ..       4     116 .. 0.91
   2 !   77.7   0.0   4.2e-25   1.3e-22     196     413 ..     287     508 ..     244     532 .. 0.87

  Alignments for each domain:
  == domain 1    score: 30.0 bits;  conditional E-value: 1.3e-10
   TIGR01041  5 iteikGplvlvekveevaydeiveielpdGekrrGqvldsseglvvvqvfegttgldkeatkvrflGetlklkvsedllGrilngsGepidgGpe 99
                + +++Gp+v+++k++++a  e+v++     +k  G+++  +e+ + +qv+e t+gl+     v+ +G+ l l++   ++Gri++g+ +p++   e
  MMETSP1137-20121227|8256_1  7 VYSVSGPVVIADKMSGAAMYELVRVGH---TKLVGEIIRLEEDKATIQVYEETSGLTVGDP-VVCTGQPLSLQLGPGVMGRIYDGIQRPLEKIAE 97
                5689*******************9965...5679***********************9998.99***********************99987555 PP

  == domain 2    score: 77.7 bits;  conditional E-value: 4.2e-25
   TIGR01041 196 ektGaleravvflnladdpaverivtprlaltvaeylafekdlhvlviltdltnycealreisaareevpGrrGypGylytdlatlyeraGrvk.....GkkGsitqipiltmpdddithpipdltGyiteGqivlsrelhrkGiyppinvlpslsrlmkdGiG.eGktredhkdvsdqlyaayaegrdlrdlvaivGeealserdrkylkfadefekkfvkqg 413
                 e+t  ++r++++ n ++ p   r  +  + +t+aey+  + ++ v ++    + ++ealreis    e+p   Gyp yl + la++yer+G+ +      ++Gsi+ +  ++ p+ d + p+   t  i +    l+++l ++  +p +n l s s+ ++           d   +   +        dl ++v +vG+++l+e d+  l+ a+   + +++q 
  MMETSP1137-20121227|8256_1 287 EET-IMKRTTLVANTSNMPVAAREASIYTGITLAEYMR-DMGMNVAMMADSTSRWAEALREISGRLAEMPADSGYPAYLGARLASFYERSGKSEmlgspSRTGSISIVGAVSPPGGDFSDPVCSATLGIVQVFWGLDKKLAQRKHFPSVNWLISYSKYLNALNPwYDANYPDFPPMRTTVKEILQMEDDLTEIVQLVGKDSLAESDKLILEVAKIIRDDYLAQN 508
                 333.6899****************************95.888888776666778*************************************96534333589****************************9999***********************998755414566789**********************************************999985 PP

>> TIGR00962  atpA: ATP synthase F1, alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   0.1   1.2e-07   3.9e-05      26     120 ..       3      98 ..       1     107 [. 0.91
   2 !   49.4   0.0     2e-16   6.2e-14     128     366 ..     196     441 ..     171     446 .. 0.78

  Alignments for each domain:
  == domain 1    score: 20.4 bits;  conditional E-value: 1.2e-07
   TIGR00962  26 evGtvvsvadGiakveGlenvlskeliefegg.vkgialnleedsvGvvilGdyseikeGsevkrtgevlevpvGdallGrvvnalGepidGkGdi 120
                  vG v+sv+  ++    ++ + ++el+ + +    g ++ leed+  + +  ++s +  G+ v +tg+ l+  +G +++Gr+ + + +p++   ++
  MMETSP1137-20121227|8256_1   3 RVGGVYSVSGPVVIADKMSGAAMYELVRVGHTkLVGEIIRLEEDKATIQVYEETSGLTVGDPVVCTGQPLSLQLGPGVMGRIYDGIQRPLEKIAEL 98 
                 699*************************976516799*************************************************9999876666 PP

  == domain 2    score: 49.4 bits;  conditional E-value: 2e-16
   TIGR00962 128 vekkaPgvierksvkePlqtGikaidaliPiGrGqreliiGdrqtGktavaidtiinqkdskkdvkcvyvaiGqkestvaqvvekle.........ekgaleytivvaasasdsaslqylaPyagvalaeyfrdkgkdaliiyddlskqavayrqlslllrrPPGreayPGdvfylhsrl...leraak...lsdekGaGsltalPiietqagdvsayiPtnvisitdGqiflesdlfnsGirPainvGlsvsr 366
                 v +  P v e+ + + Pl tG + idal+P   G    + G    Gkt ++    +++ +++ d   +yv  G +   +a+v++ +          e+  ++ t++va +++ + + +  + y+g++laey+rd g+++ ++ d  s+ a+a r++s  l   P    yP    yl +rl    er+ k   l     +Gs++ +  +    gd s  + +  + i      l+ +l ++   P++n  +s s+
  MMETSP1137-20121227|8256_1 196 VRSPRP-VSEKLAGDMPLLTGQRIIDALFPSVLGGTCAVPGAFGCGKTVIS--QALSKYSNS-D-CIIYVGCGERGNEMAEVLKDFPeltmvvngiEETIMKRTTLVANTSNMPVAAREASIYTGITLAEYMRDMGMNVAMMADSTSRWAEALREISGRLAEMPADSGYPA---YLGARLasfYERSGKsemLGSPSRTGSISIVGAVSPPGGDFSDPVCSATLGIVQVFWGLDKKLAQRKHFPSVNWLISYSK 441
                 444444.567777889********************************875..445544423.3.458*************9986541112222224667999*******************************************************************7...77777633368988722233445568999999999999999998888888887666668888888888888888888776 PP

>> TIGR03324  alt_F1F0_F1_al: alternate F1F0 ATPase, F1 subunit alpha
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   0.1   1.6e-07     5e-05      27     127 ..       3     104 ..       1     132 [. 0.90
   2 !   39.3   0.0   2.3e-13   7.2e-11     114     291 ..     180     364 ..     168     396 .. 0.81

  Alignments for each domain:
  == domain 1    score: 20.0 bits;  conditional E-value: 1.6e-07
   TIGR03324  27 evGtvesvskGiakvsGlpgvgveellkfp.GdllGiafnvdedevGvvllgeysklqaGdevertgrvldvpvGdellGrvvdplGrpldgkkelasskrl 127
                 +vG v svs  +   + + g+ + el+++    l+G  + ++ed+  + +++e s l+ Gd v  tg+ l + +G +++Gr+ d + rpl+   el++s  +
  MMETSP1137-20121227|8256_1   3 RVGGVYSVSGPVVIADKMSGAAMYELVRVGhTKLVGEIIRLEEDKATIQVYEETSGLTVGDPVVCTGQPLSLQLGPGVMGRIYDGIQRPLEKIAELTQSIYI 104
                 68999999999999999***********9725789********************************************************99988876554 PP

  == domain 2    score: 39.3 bits;  conditional E-value: 2.3e-13
   TIGR03324 114 pldgkkelasskrlpierpapeimdrapvtvplqtGlkvvdalipiGrGqrelilGdrqtGktaiaidtilnqkdknvlcvycaiGqrasavakvvaelr.........ekgaldytivvvtegndppGlqyiapyaatsiaeyfmeqGrdvlivyddltkharayrelslllrrppGreafpGdif 291
                  ldgk++ +++++    r   ++ ++ +  +pl tG +++dal p   G    + G    Gkt i+    l +  +    +y   G+r   +a+v++++          e+  ++ t+ v    n p   +  + y+  ++aey+ + G +v ++ d  ++ a a re+s  l   p    +p  + 
  MMETSP1137-20121227|8256_1 180 KLDGKETGHTMQHFWPVRSPRPVSEKLAGDMPLLTGQRIIDALFPSVLGGTCAVPGAFGCGKTVIS--QALSKYSNSDCIIYVGCGERGNEMAEVLKDFPeltmvvngiEETIMKRTTLVANTSNMPVAAREASIYTGITLAEYMRDMGMNVAMMADSTSRWAEALREISGRLAEMPADSGYPAYLG 364
                 688888877777665567777899***************************************986..3455555555569*************998765111111122456678888899999***************************************************999999997443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (600 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       169  (0.0411994); expected 82.0 (0.02)
Passed bias filter:                      149  (0.0363237); expected 82.0 (0.02)
Passed Vit filter:                        20  (0.00487567); expected 4.1 (0.001)
Passed Fwd filter:                        13  (0.00316919); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.65u 0.18s 00:00:00.83 Elapsed: 00:00:00.66
# Mc/sec: 1199.90
//
Query:       MMETSP1137-20121227|8257_1  [L=1139]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1139 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       138  (0.0336421); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.68u 0.16s 00:00:00.84 Elapsed: 00:00:00.68
# Mc/sec: 2210.82
//
Query:       MMETSP1137-20121227|8258_1  [L=664]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   3.3e-176  585.0   0.0     4e-176  584.7   0.0    1.1  1  TIGR00389 glyS_dimeric: glycine--tRNA ligase
    4.4e-12   43.5   0.0    2.6e-05   21.1   0.0    2.3  2  TIGR00409 proS_fam_II: proline--tRNA ligase
    4.7e-07   26.9   0.0    0.00038   17.3   0.0    2.5  2  TIGR00408 proS_fam_I: proline--tRNA ligase
    1.7e-05   21.8   1.3      0.024   11.4   0.0    3.4  4  TIGR00442 hisS: histidine--tRNA ligase


Domain annotation for each model (and alignments):
>> TIGR00389  glyS_dimeric: glycine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  584.7   0.0  3.9e-179    4e-176      21     563 ..       2     592 ..       1     594 [. 0.92

  Alignments for each domain:
  == domain 1    score: 584.7 bits;  conditional E-value: 3.9e-179
   TIGR00389  21 eiYgGlaglvDygPlGaelknnikkawrkffileeevlevdspiltpeevlkasGHvdkFtDalveck.kckevfRaDhlveevlekeleg....................lsgkelkellekydincPkckgenleevrsfnLlFeteiGvsgkkkgylRPEtAqGiFinFkkllefkreklPFgvaqiGksfRnEisprqgllRvrEFeqaEiefFvdPeekshekFeevkdeklkllp..rqleesgpvkltvgeavesgivenevlayfiarvkrFlleigidedklrfrqhlknelAHYAkdcwDaelktsyGwiEvvGiadRtdyDLkqHskkskkelsvfekldepkevkkreiel.nkkllGpkfrkdakkvesalenlseddleeveeeleeegkfiikv...eveldkelveikevekvvkvekyiPsviEpsfGidRiiyallehsyqkev............deeeRevlrlkpkvaPikvlvlplvnke..elkeiakeiakaLrkeeiiikyddsgs.iGkrYaraDeiGtpfavtiDfetl...eDe........tvtlReRdslkqvRvkieelvsalkk 563
                 eiYgG+ag++ ygP+G ++k+n+++ wrk+f++ee+++ev+   ++p++vl +sGHv++F+D +v++  + ++ +RaD+l eev+++++ +                    +s +el  +++ky i+ P+ ++e l+e+++fnL+F t iG++g ++gylRPEtAqGiF+nFk  le + +++PFg+aq+Gk+fRnEi+pr+gl+R rEF+  EiefFv+Pe k h+kF ev+  kl+l+   +ql+   +v++t+geav sg+v+ne+l++fi+r++ Fll+ g +e+++rfrqhl+ e+AHYA dcwDae+++s Gw E+vGiadR++yDL+ Hsk ++  l+ +++l ep+ v+k+ i      ++G+ f+kdakkv ++l +ls  +l++ e + +e g++ i v   e+el+ el+e ++v++ ++ve y P+viEpsfGidRi+ a+ eh +  +             d+++  vl ++p++aP+kv++lpl  +   +  e+  e+  +L+ ++++ k+d+sg+ iG+rYaraDe+G+pfa+tiDf+tl   +D         t tlReRds++q R  + +++ +++k
  MMETSP1137-20121227|8258_1   2 EIYGGVAGFYTYGPPGSAVKQNLIDLWRKHFVIEENLMEVN---IMPHDVLFTSGHVERFNDFIVKDSsDPNKFYRADKLLEEVMDARMAEkgvseelkveyqkvkaqadaYSREELMAVFSKYAIKAPESGAE-LTEPQEFNLMFPTPIGPTGMLHGYLRPETAQGIFLNFKFCLEQNANQMPFGIAQVGKAFRNEIAPRSGLIRQREFT-XEIEFFVHPELKRHSKFVEVASLKLQLFAspQQLNAEPAVEMTLGEAVSSGLVANETLGFFIGRTYLFLLRAGCNEKHIRFRQHLPDEMAHYACDCWDAEIEMSLGWVECVGIADRSAYDLTCHSKATGVALTAQRDLPEPRVVTKFGIAKkAVAKMGKAFKKDAKKVSAYLAELSSXELQKLEATAKEAGQVKITVegdEFELTAELIECETVTEKQHVEVYTPNVIEPSFGIDRILTAVYEHIFFVRSaaeeekgkgdkgDKQKPGVLAFPPEMAPYKVIILPLDMRVvpQYGEMLAELRTELAAHGLQYKVDESGAgIGRRYARADELGIPFAITIDFDTLgqgQDAsksselkgTATLRERDSTEQIRLPLADIPGLIAK 592
                 9**************************************97...9********************875267899**************9999*************************************99999.***************************************************************************8.6**************************985566666679*************************************************************************************************************97615789*************************************9999999********************************************996654431101212112223446******************99853367788999999****************************************94443423333334489*****************9988876 PP

>> TIGR00409  proS_fam_II: proline--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   0.0   6.2e-08   6.3e-05     126     156 ..     178     208 ..     175     217 .. 0.94
   2 !   21.1   0.0   2.6e-08   2.6e-05     466     549 ..     479     563 ..     468     581 .. 0.83

  Alignments for each domain:
  == domain 1    score: 19.8 bits;  conditional E-value: 6.2e-08
   TIGR00409 126 kqlPvnlYqiqtKfRDEiRPRfGllRgREFi 156
                  q+P  + q+ + fR+Ei PR Gl+R REF 
  MMETSP1137-20121227|8258_1 178 NQMPFGIAQVGKAFRNEIAPRSGLIRQREFT 208
                 59****************************5 PP

  == domain 2    score: 21.1 bits;  conditional E-value: 2.6e-08
   TIGR00409 466 iWpkaiAPyevvivvsnvkd.eeqkklaeevyselkakgvdvllDdrneraGvkfrdseliGiplavvvGkksldnkeiEvkkrr 549
                  +p ++APy+v i++ +++   +  +++ e+++el a+g +  +D+  + +G + +  + +Gip+a+++   +l +++   k  +
  MMETSP1137-20121227|8258_1 479 AFPPEMAPYKVIILPLDMRVvPQYGEMLAELRTELAAHGLQYKVDESGAGIGRRYARADELGIPFAITIDFDTLGQGQDASKSSE 563
                 5899***************9677789******************************************98888877765555554 PP

>> TIGR00408  proS_fam_I: proline--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.6   0.0   0.00064      0.65     102     153 ..     157     209 ..     154     232 .. 0.80
   2 !   17.3   0.0   3.7e-07   0.00038     274     348 ..     478     550 ..     472     587 .. 0.90

  Alignments for each domain:
  == domain 1    score: 6.6 bits;  conditional E-value: 0.00064
   TIGR00408 102 lRP.tsEtvlynlykkwvksyrdLPlklnqivnvfRyEkkhtrPllRtrEflf 153
                 lRP t+  ++ n+    +++ +++P+ + q+ + fR E      l+R+rEf+ 
  MMETSP1137-20121227|8258_1 157 LRPeTAQGIFLNFKFCLEQNANQMPFGIAQVGKAFRNEIAPRSGLIRQREFTX 209
                 67744555555555567788999*****************7778*******85 PP

  == domain 2    score: 17.3 bits;  conditional E-value: 3.7e-07
   TIGR00408 274 LvlPpkvapiqvvvipiifkkkenkkvlelarkveekLkkleiRvelderdnrpGkkfskaElkGiPlrlevgpk 348
                 L +Pp++ap +v+++p   + +   +  e+  +++++L + ++  ++de+    G+++ +a+  GiP+ + ++  
  MMETSP1137-20121227|8258_1 478 LAFPPEMAPYKVIILP--LDMRVVPQYGEMLAELRTELAAHGLQYKVDESGAGIGRRYARADELGIPFAITIDFD 550
                 678*************..8888889***********************************************954 PP

>> TIGR00442  hisS: histidine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.1      0.88     9e+02     347     375 ..      87     115 ..      76     125 .. 0.72
   2 !    5.4   0.1    0.0016       1.6      75     121 ..     157     208 ..     150     236 .. 0.76
   3 ?    1.3   0.0     0.028        29     201     247 ..     355     403 ..     331     409 .. 0.76
   4 !   11.4   0.0   2.4e-05     0.024     322     395 ..     484     561 ..     477     573 .. 0.84

  Alignments for each domain:
  == domain 1    score: -3.6 bits;  conditional E-value: 0.88
   TIGR00442 347 lrkagirvevdlegkklkkqlkyadkkga 375
                 + ++g++ e+++e +k+k+q ++ ++++ 
  MMETSP1137-20121227|8258_1  87 MAEKGVSEELKVEYQKVKAQADAYSREEL 115
                 45667888888888888888877777665 PP

  == domain 2    score: 5.4 bits;  conditional E-value: 0.0016
   TIGR00442  75 LRpelTapvv...RavvenklelkkpfklyyigpvFRyE.rpqkG..RyRqFh 121
                 LRpe   ++    ++++e+ ++++ pf + ++g+ FR+E  p +G  R+R+F+
  MMETSP1137-20121227|8258_1 157 LRPETAQGIFlnfKFCLEQ-NANQMPFGIAQVGKAFRNEiAPRSGliRQREFT 208
                 7777777764222566665.55779**************64566666999997 PP

  == domain 3    score: 1.3 bits;  conditional E-value: 0.028
   TIGR00442 201 lrildskaeklkellke.apkildflkeesleeleelkelLkal.giky 247
                 ++i +++++k+ + +k+ a+k++++l+e s  el++l+++ k++ ++k+
  MMETSP1137-20121227|8258_1 355 FGIAKKAVAKMGKAFKKdAKKVSAYLAELSSXELQKLEATAKEAgQVKI 403
                 7788888888877777768999999999999999999888887744455 PP

  == domain 4    score: 11.4 bits;  conditional E-value: 2.4e-05
   TIGR00442 322 kkkadvlvvaldeeaeaealklaeklrka....girvevdlegkklkkqlkyadkkgakfvvilgedelekgkvtlkd 395
                  +  +v++++ld +   ++ +++++lr++    g++ +vd +g+ +++++ +ad+ g++f+++++ d l +g+   k+
  MMETSP1137-20121227|8258_1 484 MAPYKVIILPLDMRVVPQYGEMLAELRTElaahGLQYKVDESGAGIGRRYARADELGIPFAITIDFDTLGQGQDASKS 561
                 566789999999999999999999999655556********************************9999888766555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (664 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       175  (0.0426621); expected 82.0 (0.02)
Passed bias filter:                      128  (0.0312043); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.48u 0.16s 00:00:00.64 Elapsed: 00:00:00.61
# Mc/sec: 1436.73
//
Query:       MMETSP1137-20121227|8259_1  [L=122]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (122 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       102  (0.0248659); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.16s 00:00:00.32 Elapsed: 00:00:00.30
# Mc/sec: 536.76
//
Query:       MMETSP1137-20121227|8260_1  [L=264]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.6e-81  271.2   0.0    1.9e-81  271.0   0.0    1.0  1  TIGR03234 OH-pyruv-isom: hydroxypyruvate isomerase


Domain annotation for each model (and alignments):
>> TIGR03234  OH-pyruv-isom: hydroxypyruvate isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  271.0   0.0   4.5e-85   1.9e-81       2     253 ..       2     255 ..       1     256 [. 0.97

  Alignments for each domain:
  == domain 1    score: 271.0 bits;  conditional E-value: 4.5e-85
   TIGR03234   2 rfaanlsllFte.lplleRfaaaaqaGfkavellfP....ydveaeelkaeledaglelvlfnlpaGdweageRGiavlpdreeeFregvakaieyaraLgvkkvnclaGkrpegvdeeeakatlvenlryaakklekegvtllieainkldiPgfflesteealavidevGsenv.klqyDlYhlqileedlartleelaakiahvqiaDnPgRhePGtGeinyealfaaldelgYdgwvgleYkPatdteasleWl 253
                 r+aanls+lF+e +++l Rf  aa+aGf+ave++fP    y  + +++++ele++ l+++l+n paGdw++geRG+  +p+r e++ + +++a+eya+ L +++v+ +aG+r++g++ee    ++ve++r aa+ +e +gvtll+e++n +d Pg+++ st+ al++++++ +  v +lq+DlYh+q+ e+dl++ +++l+++ ahvqia+ PgRheP  Ge+n+e+++ +lde+gY g+vgleYkP + t +sl+W 
  MMETSP1137-20121227|8260_1   2 RLAANLSFLFKEsADFLGRFRSAAHAGFDAVEFMFPgdggYIHTSDDVAKELEEHSLKQILLNAPAGDWANGERGLGGIPGRDEDWDQSISTALEYAQRLTCPNVHVMAGLRQHGASEE----VFVERMRRAADLAEPAGVTLLVEPLNFRDFPGYLVPSTRVALELLEKIDRPSVcRLQLDLYHMQVSEGDLTEGIRRLLPHAAHVQIANPPGRHEPTXGEVNFEHILTHLDEQGYPGYVGLEYKPYDGTLNSLAWA 255
                 89********99469*********************77777899**********************************************************************99875....89**********************************************9876548*******************************************************************************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (264 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        81  (0.0197465); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.22u 0.13s 00:00:00.35 Elapsed: 00:00:00.36
# Mc/sec: 967.92
//
Query:       MMETSP1137-20121227|8261_1  [L=366]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        1.3    5.4  11.3          2    4.8   7.8    1.2  1  TIGR01651 CobT: cobaltochelatase, CobT subunit


Domain annotation for each model (and alignments):
>> TIGR01651  CobT: cobaltochelatase, CobT subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   7.8   0.00049         2     204     253 ..     155     204 ..     139     229 .. 0.73

  Alignments for each domain:
  == domain 1    score: 4.8 bits;  conditional E-value: 0.00049
   TIGR01651 204 gddeesedeedtdddqpredeqeeegeeeeegdeasaaeeaeaaeeeees 253
                 +d e+++de+d+dd+   e e+ +ege+ +egd+a  ++e+  + + ++s
  MMETSP1137-20121227|8261_1 155 SDREDDDDENDDDDEGEDESEEGDEGEQGDEGDDARISDETSISYRSSQS 204
                 45556666666666666666777888888888888888888877777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (366 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       162  (0.0394929); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.32u 0.12s 00:00:00.44 Elapsed: 00:00:00.44
# Mc/sec: 1097.91
//
Query:       MMETSP1137-20121227|8262_1  [L=236]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.2e-30  102.5   0.0    5.1e-30  102.3   0.0    1.1  1  TIGR00231 small_GTP: small GTP-binding protein domain
      1e-05   22.4   0.0    7.5e-05   19.5   0.0    1.9  1  TIGR03918 GTP_HydF: [FeFe] hydrogenase H-cluster maturation GTPase HydF
      3e-05   21.0   0.1     0.0003   17.7   0.0    1.9  1  TIGR03594 GTPase_EngA: ribosome-associated GTPase EngA
    0.00018   18.6   0.0     0.0018   15.3   0.0    1.9  2  TIGR03597 GTPase_YqeH: ribosome biogenesis GTPase YqeH
     0.0068   13.8   0.0       0.53    7.6   0.0    2.2  2  TIGR00157 TIGR00157: ribosome small subunit-dependent GTPase A
  ------ inclusion threshold ------
      0.012   12.3   0.1      0.025   11.3   0.0    1.5  2  TIGR03156 GTP_HflX: GTP-binding protein HflX
      0.015   12.2   0.1       0.17    8.8   0.1    2.0  1  TIGR00450 mnmE_trmE_thdF: tRNA modification GTPase TrmE
      0.034   11.3   0.1      0.081   10.1   0.1    1.6  1  TIGR00436 era: GTP-binding protein Era


Domain annotation for each model (and alignments):
>> TIGR00231  small_GTP: small GTP-binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.3   0.0   9.9e-33   5.1e-30       4     160 ..      12     166 ..      10     170 .. 0.96

  Alignments for each domain:
  == domain 1    score: 102.3 bits;  conditional E-value: 9.9e-33
   TIGR00231   4 ikivivGhvdvGKstLlnsllknkisiteskpgvtrdyvteqieedGktykvnllDTaGqedfdairrlyvreverslevvdivilvldveeglekqtkeiiheakkkgvpiilvvnKiDlkd..dlktkvkslfaklnaepiielsaetgknidklfk 160
                 +k+v++G+++vGKs+L  ++ + + + +  +++++  + t+ +  +  t+k++++DTaGqe++  + ++y+r +++ + v+di+++ ++++ ++ ++ ke++++    +++i l++nK Dl +  ++++++++  a  n+  ++e+sa+t +n+ +lf 
  MMETSP1137-20121227|8262_1  12 FKLVLLGDSAVGKSSLVLRFVRGQ-FFEYQESTIGAAFLTQTVALNDTTVKFEIWDTAGQERYHSLAPMYYRGAAAAIVVFDITNR-DTFQRAK-QWVKELQRQGN-PNIVIALAGNKSDLSSkrKVEPEEAEAYASENGIFFMETSAKTATNVNELFV 166
                 79**********************.5555559******************************************************.*******.**********9.9**********************************************99985 PP

>> TIGR03918  GTP_HydF: [FeFe] hydrogenase H-cluster maturation GTPase HydF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.0   1.5e-07   7.5e-05      11     174 ..      15     179 ..       6     191 .. 0.62

  Alignments for each domain:
  == domain 1    score: 19.5 bits;  conditional E-value: 1.5e-07
   TIGR03918  11 alfGrrNaGKSsliNalt.gqdvaivsdvpGtTtDpvekamEllplG.pvvliDTaGldDegeLGelRvektrevlektdlallvvdaea.eleeleeelleelkekkipvivvl...nkidlkeeeke....keklekkkeeevvlvsakekegieelkealiellpeeaeek 174
                 +l+G   +GKSsl+  ++ gq      ++ G+     ++++ l +      + DTaG +   +L  + ++ +         a++v+d ++ ++ +  +++++el+++  p iv++   nk+dl++++k     +e++ +++++ ++ +sak+ ++++el  a++++lp++a ++
  MMETSP1137-20121227|8262_1  15 VLLGDSAVGKSSLVLRFVrGQFFEYQESTIGAA--FLTQTVALNDTTvKFEIWDTAGQERYHSLAPMYYRGA-------AAAIVVFDITNrDTFQRAKQWVKELQRQGNPNIVIAlagNKSDLSSKRKVepeeAEAYASENGIFFMETSAKTATNVNELFVAIARKLPKTAPQP 179
                 566666666666654443133333333344433..2333333433321344556666655555555555444.......45566666544145678899*******9999888755559***99987765444555666677778899*******************9998444 PP

>> TIGR03594  GTPase_EngA: ribosome-associated GTPase EngA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.0   5.9e-07    0.0003     177     344 ..      13     170 ..       3     178 .. 0.42

  Alignments for each domain:
  == domain 1    score: 17.7 bits;  conditional E-value: 5.9e-07
   TIGR03594 177 kiaiiGrpNvGKStLvNallgeervivsdiaGtTrDsidievevk..gkkylliDTAGirrkkkveekveklsvlrtlkaieradvvllvlDat..egiseqDlkiaglileegkalvivv...NKwDlvkdekeleelkkeleeklkflkfapivfiSAltgkgveklleaike 344
                 k+ ++G   vGKS+Lv ++++ + +  ++++ +     +++v  +    k+ + DTAG  r ++++               + a  +++v+D+t  +++++  ++ ++ ++++g + +++    NK Dl     ++++++ e  e ++  + + ++ +SA+t ++v++l+ ai +
  MMETSP1137-20121227|8262_1  13 KLVLLGDSAVGKSSLVLRFVRGQFF-EYQESTIGAAFLTQTVALNdtTVKFEIWDTAGQERYHSLAPM-----------YYRGAAAAIVVFDITnrDTFQR-AKQWVKELQRQGNPNIVIAlagNKSDLS----SKRKVEPEEAEAYASENGIFFMETSAKTATNVNELFVAIAR 170
                 5556666666666666666554432.233333333333333333300334555666665554444311...........1122222333334331022222.3333444444444433321133666666....23333333334444444555555666666666666655543 PP

>> TIGR03597  GTPase_YqeH: ribosome biogenesis GTPase YqeH
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   3.5e-06    0.0018     157     248 ..      13     103 ..       5     106 .. 0.85
   2 ?    3.7   0.0     0.012         6      73     151 ..      97     170 ..      84     176 .. 0.68

  Alignments for each domain:
  == domain 1    score: 15.3 bits;  conditional E-value: 3.5e-06
   TIGR03597 157 dvyvvGvtNVGKSsliNkllklnkgkkk.vittSkfpgTTldlieipldkesvllDtpGiineeqianllskkdlkkivpkkeikpktyqlke 248
                 + +++G + VGKSsl+ + ++ +  + +       f   T+ l++  +  +  + Dt+G  + +++a +  +  +  iv+    ++ t+q  +
  MMETSP1137-20121227|8262_1  13 KLVLLGDSAVGKSSLVLRFVRGQFFEYQeSTIGAAFLTQTVALNDTTV--KFEIWDTAGQERYHSLAPMYYRGAAAAIVVFDITNRDTFQRAK 103
                 66789***************9776665523445789999*******99..999**************99999999999999999999999765 PP

  == domain 2    score: 3.7 bits;  conditional E-value: 0.012
   TIGR03597  73 Difdlegslikelkrfvkenkvl.lvvNKidllpksvklekikewlkkeakeeglkpvdillvsakkkkglkellelikk 151
                 D f   + ++kel+r  + n v+ l +NK dl  k++ +    e  + +a+e+g+     + +sak+ ++++el+ +i +
  MMETSP1137-20121227|8262_1  97 DTFQRAKQWVKELQRQGNPNIVIaLAGNKSDLSSKRKVEP---EEAEAYASENGIF---FMETSAKTATNVNELFVAIAR 170
                 4677778999*****999888764679****977665443...4445566667766...455677777777777776665 PP

>> TIGR00157  TIGR00157: ribosome small subunit-dependent GTPase A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.6   0.0     0.001      0.53     126     143 ..      15      32 ..       8      70 .. 0.82
   2 ?    4.4   0.0      0.01       5.1      69     124 ..     116     172 ..      86     189 .. 0.82

  Alignments for each domain:
  == domain 1    score: 7.6 bits;  conditional E-value: 0.001
   TIGR00157 126 vfaGqSGVGKSSLiNlld 143
                 v+ G S VGKSSL+ + +
  MMETSP1137-20121227|8262_1  15 VLLGDSAVGKSSLVLRFV 32 
                 789**********97665 PP

  == domain 2    score: 4.4 bits;  conditional E-value: 0.01
   TIGR00157  69 niepiivlnkkdlleeedaekeqleelknl.gYkvllvsvkneegleelkeklkkri 124
                 ni + +  nk dl ++ ++e e +e +++  g   + +s+k++ +++el+ +++ ++
  MMETSP1137-20121227|8262_1 116 NIVIALAGNKSDLSSKRKVEPEEAEAYASEnGIFFMETSAKTATNVNELFVAIARKL 172
                 667777779***********999999986515556669**********998887775 PP

>> TIGR03156  GTP_HflX: GTP-binding protein HflX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0      0.61   3.1e+02     191     216 ..      13      38 ..       6      69 .. 0.71
   2 ?   11.3   0.0   4.9e-05     0.025     273     350 ..      88     171 ..      81     172 .. 0.81

  Alignments for each domain:
  == domain 1    score: -2.2 bits;  conditional E-value: 0.61
   TIGR03156 191 tvalvGYTNaGKstllnaltkaevla 216
                 ++ l G    GKs+l+ ++++ + ++
  MMETSP1137-20121227|8262_1  13 KLVLLGDSAVGKSSLVLRFVRGQFFE 38 
                 56678888999999998888766554 PP

  == domain 2    score: 11.3 bits;  conditional E-value: 4.9e-05
   TIGR03156 273 lhvvDasdeeaeeqieaveevLeelgaeeipvllvlNkidkleeeeleeleekk...ee...avlvsAkkgegleeLleaieea 350
                 + v D++++++ +++++  + L+  g  +i + l+ Nk d+ +++++e +e+++   e+    +  sAk+ ++++eL  ai+++
  MMETSP1137-20121227|8262_1  88 IVVFDITNRDTFQRAKQWVKELQRQGNPNIVIALAGNKSDLSSKRKVEPEEAEAyasENgifFMETSAKTATNVNELFVAIARK 171
                 779999999999999998888888899999999999*******99998888877443224445678***********9999876 PP

>> TIGR00450  mnmE_trmE_thdF: tRNA modification GTPase TrmE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   0.1   0.00032      0.17     210     342 ..      12     150 ..       6     203 .. 0.54

  Alignments for each domain:
  == domain 1    score: 8.8 bits;  conditional E-value: 0.00032
   TIGR00450 210 lklaivGktNvGKSSLlNallkkdraiVsdikGttR..DvvEedleleGi..lvkllDtAGiReaadkvEklGiekslkaikeadlvlyvlDaskpltkddeliitlkkkkkdlllvl...NKiDLa........eleilkselkltv 342
                 +kl+++G+  vGKSSL+  +++       +++ +t     + + ++l+    ++++ DtAG    ++ +  +           a +v++ +  +   +++++ +++l+++ ++ +++    NK DL         e e + se  +  
  MMETSP1137-20121227|8262_1  12 FKLVLLGDSAVGKSSLVLRFVR---GQFFEYQESTIgaAFLTQTVALNDTtvKFEIWDTAGQERYHS-LAPM-----YYRGAAAAIVVFDITNRDTFQRAKQWVKELQRQGNPNIVIAlagNKSDLSskrkvepeEAEAYASENGIFF 150
                 7999999999999999765554...344555555531134566666665411445778887433333.2222.....11122334444444444455566677888888877777664445888888555444443444444444444 PP

>> TIGR00436  era: GTP-binding protein Era
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.1   0.00016     0.081      63     165 ..      74     174 ..      12     178 .. 0.64

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 0.00016
   TIGR00436  63 hklnellvkeirkalsevdlilfvvdsdeknkedellleklqklkapvv...lalnkldnkekdkllelidkeasllefkeiveisalkgenveelkaiveaklre 165
                 h+l  +  + +  a+     ++f +   ++ ++ +  +++lq+  +p +   la nk d   k k++++++++   ++    +e+sa++ +nv+el  ++ +kl++
  MMETSP1137-20121227|8262_1  74 HSLAPMYYRGAAAAI-----VVFDITNRDTFQRAKQWVKELQRQGNPNIviaLAGNKSDLSSKRKVEPEEAEAYASENGIFFMETSAKTATNVNELFVAIARKLPK 174
                 555555555555554.....66767666666664455555555554443111556999999******99999999999999***************9999999976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (236 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       169  (0.0411994); expected 82.0 (0.02)
Passed bias filter:                      154  (0.0375427); expected 82.0 (0.02)
Passed Vit filter:                        19  (0.00463189); expected 4.1 (0.001)
Passed Fwd filter:                         8  (0.00195027); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.31u 0.14s 00:00:00.45 Elapsed: 00:00:00.45
# Mc/sec: 692.21
//
Query:       MMETSP1137-20121227|8263_1  [L=1049]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.7e-95  317.9  12.8    4.5e-46  154.9   5.3    3.0  3  TIGR00917 2A060601: Niemann-Pick C type protein family
    2.8e-65  218.5  20.2    7.5e-35  117.7   9.3    3.0  2  TIGR00918 2A060602: transmembrane receptor Patched
    7.5e-17   58.4  18.8    1.4e-11   41.0   6.7    3.1  3  TIGR00921 2A067: efflux transporter, putative, hydrophobe/amphiphile efflux-3 (HAE3) family
    8.4e-07   25.1  28.2    0.00017   17.6   9.4    3.0  3  TIGR03480 HpnN: hopanoid biosynthesis associated RND transporter like protein HpnN
    6.2e-06   22.4   7.6    1.3e-05   21.3   5.2    1.4  1  TIGR00920 2A060605: 3-hydroxy-3-methylglutaryl-coenzyme A reductase
  ------ inclusion threshold ------
       0.18    7.4  19.9    0.00067   15.4   7.5    1.4  2  TIGR00915 2A0602: RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
        2.3    5.6  31.1       0.25    8.8  10.7    2.7  2  TIGR00916 2A0604s01: protein-export membrane protein, SecD/SecF family


Domain annotation for each model (and alignments):
>> TIGR00917  2A060601: Niemann-Pick C type protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.9   0.0     1e-11   6.1e-09     298     420 ..      10     134 ..       5     153 .. 0.77
   2 !  132.0   0.4   6.4e-42   3.7e-39     602     868 ..     354     618 ..     321     683 .. 0.86
   3 !  154.9   5.3   7.7e-49   4.5e-46     953    1204 .]     747     996 ..     739     996 .. 0.92

  Alignments for each domain:
  == domain 1    score: 31.9 bits;  conditional E-value: 1e-11
   TIGR00917 298 rnekqsaavetilerfftkyGsfvarkPglvlllsvvlvvll......gvGliklevetdPvkLWvapdsraalekeyfDtkfgPfyrveqliikavqtsqdekfpevldrdllkklldlqkkik.elea 420
                  +++ s ++++ + + f+ +G fvar+P lv+lls+   +++      ++G   l  et+  +LWv pds+a  +k+ +++ fg   r + +  ++       k ++vl++  +k++l  ++++k +l+a
  MMETSP1137-20121227|8263_1  10 AMQRASRTIQSGFYHTFYAWGAFVARRPKLVILLSLLTGLACmtrlwiALGGEALPTETEQSNLWVPPDSQAVTDKDRYEELFGRPTRRNEIYFTTD-----PKGGNVLTNSTFKEILRYDQSLKtKLTA 134
                 4556666777777778899***************98765554111111566778999***************************8889888888776.....4688999999999999888887624554 PP

  == domain 2    score: 132.0 bits;  conditional E-value: 6.4e-42
   TIGR00917 602 fvdskvaLGlaGvlivlasvvisvGvfsaiglkatLiiveviPfLvLavgvdnifilvqtyerlerlrrevvkraeilltleqqlarvLakvgPsilLaslseslafllGalskmPavrafslyaalavliDfLLqitafvaLlvlDikraeekrlDilpcikgeksd......isaekssvqkkeglLtrffkevyaPlLlkkivkivvivifvglllagialatrvdiGLdqelalPqdsylqeyfkslaell..evGppvyivlkgd..ydytd 868
                  v+s+ +L laG+    +++ +s G+ +  g+++   +v+v+Pf+ L +gvd +f+l++    le    +        l++e++++++++  g si+++sl++++afllG  s++Pa   f ++a + +l Df++qit f+  +vlD++r++ +r+D +p+ik   +       +s  +  +    g L  f+ ++y+P L    v+++vi++f+gl  +    a +++  +d +  +P+ + l e f+   e      Gppv++v  +   +dy+ 
  MMETSP1137-20121227|8263_1 354 PVRSQALLALAGIASCGLAIGVSYGLTTGFGVPLNP-VVNVLPFILLGIGVDDMFVLLNS---LEATDDD--------LSVEEKIGQTMGMAGVSITVTSLTDMFAFLLGVSSSLPALSDFCIFAFIGILFDFFFQITFFAGWMVLDTRRQKANRIDGFPFIKRTTDTvacccfPSCGRIFAAPAGGRLRWFITKFYVPALQPAAVRAIVIAVFFGLFGFMAYAASNLEQDFDYRWFVPSGAKLHETFELKDEWYgsYSGPPVWVVTPDSevFDYSL 618
                 3899*****************************986.579*****************986...5555666........899**********************************************************************************9999978887777777788888999************************************************************98887762257*****9985431155655 PP

  == domain 3    score: 154.9 bits;  conditional E-value: 7.7e-49
   TIGR00917  953 fvkyLPffLndnpsakCakaGhaayssavdlsg..yetrieassfrtYhtvLktqaDyinalkaarklaakvtrslklevfpYsvfYvffeqYLtiksdallnlgislgaifvvtlvllglnvlsavvvvisvgmivvnllgimalwnislnavsvvnlvmavgisvefcshiaaafatskkvsrderakealaemGssvfsGitltklvGvvvLafskseifqvyYfrmYLalvllGalhGLvfLPvllsllg 1204
                  f  +L  fL+d p      + +   +++   s+   +  i+ ++fr+ +  +++ +D i+++ + r   +    + +   +pY   Y+f+eqY  i+ +a++nl ++l+a+f +tl+ +  n+ ++++v++ v m+ v++lg+m+lw++ +++v ++nlv+a+g++v++ +h+a+af  + ++ + er+++al emG++v+ G + t ++ v+vLa + s if+v+ f+ ++++ l+Ga+hGLvfLPv+ls++g
  MMETSP1137-20121227|8263_1  747 FWSWLDQFLSDDPRGAAVASNFVWRADSYVRSEaeVARGIRGARFRAVYEDIEKAQDQIDSMTSLRSDVESAGVGDENASYPYMFAYLFYEQYAVIVREAIVNLVLALTAVFFITLLVM-GNLGATLLVLLCVLMVDVDILGLMWLWDLTIDSVTIINLVLAIGLTVDYSAHVAHAFLMA-QGTHLERMNHALIEMGTAVIHGAFST-FLAVLVLAGADSYIFTVF-FKQFFGICLFGATHGLVFLPVVLSFIG 996 
                  788899999999998888888888888766655234467************************99987777777889999************************************999.69999*******************************************************.999*******************9977.788**************8.899*********************997 PP

>> TIGR00918  2A060602: transmembrane receptor Patched
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.1   0.4   6.8e-33     4e-30     302     576 ..     229     518 ..     220     522 .. 0.84
   2 !  117.7   9.3   1.3e-37   7.5e-35     672    1122 ..     531    1000 ..     525    1020 .. 0.80

  Alignments for each domain:
  == domain 1    score: 102.1 bits;  conditional E-value: 6.8e-33
   TIGR00918 302 ivGGtkknssGkllkaqalqsvfqlmtpk.....qlyehfkgdekvshi..gwneekaaavleawqrkfsevveqslaknssqkvlafssttlddilkkfsdvsvirvvsGyllmlayacltllrwdcaksqgsvGlaGvllvalsvaaGlGlcallGisfnaattqvlpflalGvGvddvfllahafsetgrnipleertgeilkrtGasvvltsisnvtaffmaalipipalrafslqaavvvvsnlaavllvfpailsldlrrrearrld...........ifccfvspc 576
                 + GG + +  G++++a+a++ v+q+  +      +l     +d+    i  +w+ +   +   aw r   e   +   + ss +++  + +++   l+      v ++++G++l+++ya+l l r  +++sq+ + laG+    l++    Gl++ +G+ +n    +vlpf+ lG+Gvdd+f+l ++   t  ++ +ee++g+ +  +G s+ +ts++++ af++     +pal  f++ a + + +++   +  f   + ld rr++a+r+d           + cc+++ c
  MMETSP1137-20121227|8263_1 229 VFGGIEYDAAGNIVSAKAVKVVYQMNDDEsgepiELASAAFEDQMNYMIgpDWTLDPPISEGSAWTRDGGEGPVD--FESSSVDLYPETHAAIGVQLRGSIGGDVSSLTIGIMLIIVYALLVLARCHPVRSQALLALAGIASCGLAIGVSYGLTTGFGVPLNPVV-NVLPFILLGIGVDDMFVLLNSLEATDDDLSVEEKIGQTMGMAGVSITVTSLTDMFAFLLGVSSSLPALSDFCIFAFIGILFDFFFQITFFAGWMVLDTRRQKANRIDgfpfikrttdtVACCCFPSC 518
                 679999999999999999999888765431211145444333333333422699999888889999987765433..36779999999999999999998888899999*****************************************************998.9*********************************************************************************************************944443333333447777666 PP

  == domain 2    score: 117.7 bits;  conditional E-value: 1.3e-37
   TIGR00918  672 atfaekhyapfllkskakvvvillflallglslygttrvrdGldltdivprdtkeydflsaqlryfsfye...myvvtqknvdyakvqkllydlhqsfssvkyvlkeengqlpr...lwlhyfrdwlqglqeafdedyeaGritk.esyrngsdd..avlaykll....vqtGerekpv.dieq......ltkqrlveadG......i......inpeafyiylsawvsndplayaasqanlrpeppeylhdkadytpeslkipaaepleyaqfpfylrGlretsdfveaiekvraicakyeklGl....asypsGipflfweqylglrrslllsisvvlvctllvvallllnpwtaglivlvlalmtvelfGimgllGiklsavpvviliasvGigveftvhvalafltaiGdrnrravlalehslapvldGalstllgvlmlagsefdfivryffavlavltvlGvlnglvllpvllsllGpepe 1122
                    f +k y p l  + ++++vi +f +l+g   y+++ ++  +d    vp ++k ++ ++ +  +++ y+   + vvt            l     ++ ++ ++++e++  lp     w  ++r+++ +  ++     ++   t+  + +    d  + l y       vq  ++ +p+ d ++       + + lv+++G      i      ++p  f+  l  + s+dp + aa  +n+  +   y+  +a+           + +  a+f    + ++++ d ++ + ++r+     e++G+    asyp  + +lf+eqy  + r  ++ + + l + +++  l++ n  ++ l++l ++++ v+++G+m l  + + +v ++ l++++G++v ++ hva afl a+G +  r+ +al  + + v++Ga+st l+vl+lag++  +i   ff  +  + ++G+ +glv+lpv+ls++Gp + 
  MMETSP1137-20121227|8263_1  531 RWFITKFYVPALQPAAVRAIVIAVFFGLFGFMAYAASNLEQDFDYRWFVPSGAKLHETFELKDEWYGSYSgppVWVVTPD---SEVFDYSLIPEQGRLDNLAQIVQENEWILPSsvtAWYALYREYVWECGQVVAPINTTCIATNaTCLKRECTDasGELCYPYCsfgkVQRSSTGEPLiDANNntlrgaALDKYLVDSEGnalpdgIpvegsyLPPAYFWSWLDQFLSDDPRG-AAVASNFVWRADSYVRSEAEVA---------RGIRGARFRAVYEDIEKAQDQIDSMTSLRSD---VESAGVgdenASYPYMFAYLFYEQYAVIVREAIVNLVLALTAVFFITLLVMGNLGATLLVLLCVLMVDVDILGLMWLWDLTIDSVTIINLVLAIGLTVDYSAHVAHAFLMAQGTHLERMNHALIEMGTAVIHGAFSTFLAVLVLAGAD-SYIFTVFFKQFFGICLFGATHGLVFLPVVLSFIGPSAS 1000
                  5689999**************************************************************85556777754...34444456666788999999999999999853337********9999888776655555554145554444411457776543355898888888536543111111457889**987433333333333367888999999999***988.5667899999999998887765.........8899999999999999998887777777754...444444222379*************999999999999999999999888888888888999999999*******************************************************************************98.689999999999999********************874 PP

>> TIGR00921  2A067: efflux transporter, putative, hydrophobe/amphiphile efflux-3 (HAE3) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.0   6.7   2.4e-14   1.4e-11     586     728 ..     334     482 ..     316     487 .. 0.81
   2 ?    0.3   0.0     0.048        28     293     314 ..     548     569 ..     540     613 .. 0.70
   3 !   19.5   1.7   7.6e-08   4.4e-05     194     313 ..     846     962 ..     795    1034 .. 0.61

  Alignments for each domain:
  == domain 1    score: 41.0 bits;  conditional E-value: 2.4e-14
   TIGR00921 586 mtvvgvllvlivllvvyR......divkavvpliailsvilwaigllglagipsslilaalvslilGlGvdysihlleRyfEErke.lspkeaiiralertGkailvsalTtagGFlaLllsqlpiirnfGlvavvgvllsllvalvvfP 728
                 +t+  +l+++  llv  R      +   a++++ + ++ i+ + gl +  g+p ++++ +l  ++lG+Gvd  +++l   +E  ++ ls+ e i +++  +G +i+v +lT  + Fl  ++s lp++++f + a +g+l+ ++   + f 
  MMETSP1137-20121227|8263_1 334 LTIGIMLIIVYALLVLARchpvrsQALLALAGIASCGLAIGVSYGLTTGFGVPLNPVVNVLPFILLGIGVDD-MFVLLNSLEATDDdLSVEEKIGQTMGMAGVSITVTSLTDMFAFLLGVSSSLPALSDFCIFAFIGILFDFFFQITFFA 482
                 4444444444444444442111114566899999999**********************************5.77777778888777*****************************************************9998877765 PP

  == domain 2    score: 0.3 bits;  conditional E-value: 0.048
   TIGR00921 293 kAvliallttvlGFlalllsvl 314
                 +A++ia      GF+a ++s l
  MMETSP1137-20121227|8263_1 548 RAIVIAVFFGLFGFMAYAASNL 569
                 5555555555555555555544 PP

  == domain 3    score: 19.5 bits;  conditional E-value: 7.6e-08
   TIGR00921 194 lgvvlaisgilvvlvLllvfksvvrkllpLvivlfgVvvvlGlmglLGiPlsaatlaalplliGlgIdYgiqltnRyeEErdkgkakeeAvveavkrtgkAvliallttvlGFlalllsv 313
                   v l ++  +v  + llv  +  ++ll L  vl+  v +lGlm l    ++ +t+  l+l iGl +dY++++   +   ++   +  e + +a+ + g Av+  +  t l  l l+ + 
  MMETSP1137-20121227|8263_1 846 AIVNLVLALTAVFFITLLVMGNLGATLLVLLCVLMVDVDILGLMWLWDLTIDSVTIINLVLAIGLTVDYSAHVAHAFLMAQG---THLERMNHALIEMGTAVIHGAFSTFLAVLVLAGAD 962
                 3334444444455555555555566666666666666666666666666666666666666666666666666666543322...22333444455556666666666655555555444 PP

>> TIGR03480  HpnN: hopanoid biosynthesis associated RND transporter like protein HpnN
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.0     0.013       7.9       2      64 ..      26      94 ..      25     108 .. 0.74
   2 !    9.0   5.1   0.00011     0.063     277     437 ..     338     503 ..     329     512 .. 0.81
   3 !   17.6   9.4   2.8e-07   0.00017     708     818 ..     840     954 ..     832     962 .. 0.83

  Alignments for each domain:
  == domain 1    score: 2.1 bits;  conditional E-value: 0.013
   TIGR03480  2 lvalvgvsvrhaalvlavallltals...viytv..erlevnTdtskl.lskdlpfrkderafekaFPq 64
                + a+ ++++r++ lv++++ll  +++   ++ +   e l  +T++s+l +++d +   d++++e+ F+ 
  MMETSP1137-20121227|8263_1 26 FYAWGAFVARRPKLVILLSLLTGLACmtrLWIALggEALPTETEQSNLwVPPDSQAVTDKDRYEELFGR 94
                67899************9997544441114444322788888888887468899999999999999964 PP

  == domain 2    score: 9.0 bits;  conditional E-value: 0.00011
   TIGR03480 277 lslvlvlvlLlla....lrslrlv.lavlvtlivgLiltaafaalavGslnliSvaFavlfiGlgvdfaiqfslryreelergeeeeeAlseaakevgaalllaalatAigffaFlpTdykGvseLGlIagvgmliallvtltllpAlLkllkpsgkk.eearlktl 437
                 ++l++v  lL+la    +rs  l+ la + +  +++ ++ ++ + +   ln +  +   +++G+gvd  + + l   e  + + + ee + +++  +g+++++++l+  ++f+  +  +   +s+  + a +g+l  +++++t+ +  + l   ++k+ +  +++++
  MMETSP1137-20121227|8263_1 338 IMLIIVYALLVLArchpVRSQALLaLAGIASCGLAIGVSYGLTTGFGVPLNPVVNVLPFILLGIGVD-DMFVLLNSLEATDDDLSVEEKIGQTMGMAGVSITVTSLTDMFAFLLGVSSSLPALSDFCIFAFIGILFDFFFQITFFAGWMVLDTRRQKAnRIDGFPFI 503
                 5566666666666555589988762456666777777888888888889**99999999999****9.5778899999**********************************************************************9998444443154555555 PP

  == domain 3    score: 17.6 bits;  conditional E-value: 2.8e-07
   TIGR03480 708 etvvkAFleAfilalvaitvlLllvLrrvrdvllvLvPlllaalltvaamvllgiplNfANiiaLPLllGlgVdfkiyivvrlrege.dsanllqss...taravlfsalttvta 818
                  ++v+  +   +lal a+  + llv+ ++  +llvL+ +l+  + ++++m+l ++++ +  ii L L +Gl Vd + ++ +++  ++ ++ + ++ +   ++ av+ +a+ t  a
  MMETSP1137-20121227|8263_1 840 AVIVREAIVNLVLALTAVFFITLLVMGNLGATLLVLLCVLMVDVDILGLMWLWDLTIDSVTIINLVLAIGLTVDYSAHVAHAFLMAQgTHLERMNHAlieMGTAVIHGAFSTFLA 954
                 555555567789***********************************************************************99996555555543111567888888877655 PP

>> TIGR00920  2A060605: 3-hydroxy-3-methylglutaryl-coenzyme A reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3   5.2   2.3e-08   1.3e-05      59     216 ..     328     485 ..     318     497 .. 0.93

  Alignments for each domain:
  == domain 1    score: 21.3 bits;  conditional E-value: 2.3e-08
   TIGR00920  59 ssdvivltivrciavlyiyyqftklrklGskyilGiaGlftvfssfvfstavikflgkeltelkealffflllidlskasalakfalssnsqdevkdniarGlallGPtitldtvvevlvigvGtlsgvrrlevlccfavlsvlvnyvvfmtffPacl 216
                   dv  lti   + ++y  + +++ + + s+ +l +aG+ +   +   s  +   +g  l  + + l+f+ll i +    +l +   +++    v++ i + + + G +it+ ++  ++   +G+ s++  l  +c+fa + +l +++  +tff   +
  MMETSP1137-20121227|8263_1 328 GGDVSSLTIGIMLIIVYALLVLARCHPVRSQALLALAGIASCGLAIGVSYGLTTGFGVPLNPVVNVLPFILLGIGVDDMFVLLNSLEATDDDLSVEEKIGQTMGMAGVSITVTSLTDMFAFLLGVSSSLPALSDFCIFAFIGILFDFFFQITFFAGWM 485
                 5688889999999***************************9999999999999****************************9998777787889************************************************************8654 PP

>> TIGR00915  2A0602: RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -5.2   1.1       1.9   1.1e+03     337     429 ..     327     424 ..     324     448 .. 0.61
   2 ?   15.4   7.5   1.1e-06   0.00067     336     411 ..     842     917 ..     825     989 .. 0.85

  Alignments for each domain:
  == domain 1    score: -5.2 bits;  conditional E-value: 1.9
   TIGR00915 337 ieevvktlleaivLvflvmylfL...qnfratliptla....vPvvLlgtfavlaalgfsintLtlfalvLaiGllvddaivvvenvervmkeegldPke 429
                 i   v  l + i+L+++  +l L   + +r+  + +la      +++  ++++ + +g+ +n +      + +G+ vdd  v  + +e   ++++l+ +e
  MMETSP1137-20121227|8263_1 327 IGGDVSSLTIGIMLIIVYALLVLarcHPVRSQALLALAgiasCGLAIGVSYGLTTGFGVPLNPVVNVLPFILLGIGVDDMFVLLNSLEA--TDDDLSVEE 424
                 55567777888888877777776222345654433333211134455557888888888888655444444578889999998888875..345555555 PP

  == domain 2    score: 15.4 bits;  conditional E-value: 1.1e-06
   TIGR00915 336 sieevvktlleaivLvflvmylfLqnfratliptlavPvvLlgtfavlaalgfsintLtlfalvLaiGllvddaiv 411
                  + e +  l+ a+  vf++ +l + n+ atl+  l v +v +  ++++   +++i+++t+  lvLaiGl vd +  
  MMETSP1137-20121227|8263_1 842 IVREAIVNLVLALTAVFFITLLVMGNLGATLLVLLCVLMVDVDILGLMWLWDLTIDSVTIINLVLAIGLTVDYSAH 917
                 567888999***************************************************************7654 PP

>> TIGR00916  2A0604s01: protein-export membrane protein, SecD/SecF family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   5.4     0.055        32      93     228 ..     333     475 ..     323     478 .. 0.79
   2 ?    8.8  10.7   0.00042      0.25      86     205 ..     842     959 ..     840     978 .. 0.85

  Alignments for each domain:
  == domain 1    score: 1.8 bits;  conditional E-value: 0.055
   TIGR00916  93 allialvlvllylllrYellgaiaaiallvhd.....vilivgvlsllg.aeltlagiagll..liiGysvddtVvifeRireelregrtvaeaielginralsriidtnvttllavliLyvlgtgaikgfaltlliGvivgvy 228
                 +l i+++l+++y ll       + + all+        ++i   ++l+  + + l+ ++ +l  + +G+ vdd  v  + + e +  + +v+e i + +  a  +i +t++t ++a l+ +     a+++f +  +iG++++++
  MMETSP1137-20121227|8263_1 333 SLTIGIMLIIVYALLVLARCHPVRSQALLALAgiascGLAIGVSYGLTTgFGVPLNPVVNVLpfILLGIGVDDMFVLLNSL-EATDDDLSVEEKIGQTMGMAGVSITVTSLTDMFAFLLGVSSSLPALSDFCIFAFIGILFDFF 475
                 6778888888888877777666666666655543332222333456655577777777777644778*******9999998.7899******************************999999999***************9988 PP

  == domain 2    score: 8.8 bits;  conditional E-value: 0.00042
   TIGR00916  86 likkgllallialvlvllylllrYellgaiaaiallvhdvil.ivgvlsllgaeltlagiagllliiGysvddtVvifeRireelr.egrtvaeaielginralsriidtnvttllavliLy 205
                 +++++++ l++al +v++  ll    lga+  ++l v  v + i+g++ l  +++++ +i+ l+l iG++vd +      +   +   + t  e ++ ++ ++ +++i + + t+lavl+L 
  MMETSP1137-20121227|8263_1 842 IVREAIVNLVLALTAVFFITLLVMGNLGATLLVLLCVLMVDVdILGLMWLWDLTIDSVTIINLVLAIGLTVDYSA----HVAHAFLmAQGTHLERMNHALIEMGTAVIHGAFSTFLAVLVLA 959
                 6899************998888888888877666666555557*****************************765....56666666999999999*********************99995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1049 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       219  (0.0533886); expected 82.0 (0.02)
Passed bias filter:                      102  (0.0248659); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         8  (0.00195027); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.99u 0.17s 00:00:01.15 Elapsed: 00:00:01.18
# Mc/sec: 1173.36
//
Query:       MMETSP1137-20121227|8264_1  [L=292]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (292 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        66  (0.0160897); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.17s 00:00:00.43 Elapsed: 00:00:00.37
# Mc/sec: 1041.64
//
Query:       MMETSP1137-20121227|8265_1  [L=343]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (343 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        46  (0.011214); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.15s 00:00:00.40 Elapsed: 00:00:00.45
# Mc/sec: 1006.05
//
Query:       MMETSP1137-20121227|8266_1  [L=318]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.6e-12   43.7   0.0    5.3e-10   36.9   0.0    2.1  2  TIGR02427 protocat_pcaD: 3-oxoadipate enol-lactonase
    5.5e-07   27.0   0.0    3.1e-06   24.6   0.0    2.0  2  TIGR03611 RutD: pyrimidine utilization protein D
    1.2e-05   22.9   0.0    1.8e-05   22.3   0.0    1.2  1  TIGR01250 pro_imino_pep_2: proline-specific peptidases
     0.0006   17.3   0.0     0.0012   16.4   0.0    1.4  1  TIGR01738 bioH: putative pimeloyl-BioC--CoA transferase BioH
  ------ inclusion threshold ------
      0.016   12.2   0.0      0.022   11.8   0.0    1.2  1  TIGR01249 pro_imino_pep_1: prolyl aminopeptidase
      0.023   11.9   0.0      0.037   11.3   0.0    1.2  1  TIGR03695 menH_SHCHC: 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase


Domain annotation for each model (and alignments):
>> TIGR02427  protocat_pcaD: 3-oxoadipate enol-lactonase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.9   0.0   7.8e-13   5.3e-10      30     133 ..      63     167 ..      31     173 .. 0.78
   2 !    5.1   0.0    0.0041       2.8     181     205 ..     227     251 ..     202     304 .. 0.87

  Alignments for each domain:
  == domain 1    score: 36.9 bits;  conditional E-value: 7.8e-13
   TIGR02427  30 dkvlealtkdfr.vlryDkrGHGlSdvpegpysiedladdvlallDalgiekaavcGlSlGGliaqaLaarrpdrvealvlsntaakigtaesWeaRiaavraeG 133
                 ++ ++ +++  r ++++D+ G G+S+ p  + si++ ad  la++D+lg+++++ +G  lG l++ +La+r p+rv   vl+n  +   +ae  ++ ++ v aeG
  MMETSP1137-20121227|8266_1  63 AEAAPLISATGRlMVAIDELGYGRSSNPVRSCSIDEIADCGLAVADELGLKRFVAAGSLLGCLVSISLASRYPERVCGTVLTNLYHYRAKAEEASSSAESVGAEG 167
                 55555555555515789****************************************************************998777776666666666666666 PP

  == domain 2    score: 5.1 bits;  conditional E-value: 0.0041
   TIGR02427 181 rdadlrerleeiavPtlviaGdeDg 205
                  ++d+ +++++++ P+l++ G+  +
  MMETSP1137-20121227|8266_1 227 SAFDFEAAARAVRCPVLCLRGEGAA 251
                 478****************998655 PP

>> TIGR03611  RutD: pyrimidine utilization protein D
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.6   0.0   4.5e-09   3.1e-06      42     114 ..      76     147 ..      32     156 .. 0.85
   2 ?    0.3   0.0      0.12        79     180     204 ..     221     245 ..     190     306 .. 0.68

  Alignments for each domain:
  == domain 1    score: 24.6 bits;  conditional E-value: 4.5e-09
   TIGR03611  42 vvvyDhrGtgrspeelaedysiaalaadvlelldaldiekahvvGhalGgliglelalrkperlaklvlinaW 114
                 +v  D+ G grs++ +    si+++a+  l++ d+l+++++   G  lG l+++ la r+per+   vl n +
  MMETSP1137-20121227|8266_1  76 MVAIDELGYGRSSNPVR-SCSIDEIADCGLAVADELGLKRFVAAGSLLGCLVSISLASRYPERVCGTVLTNLY 147
                 57789*********996.689********************************************99999965 PP

  == domain 2    score: 0.3 bits;  conditional E-value: 0.12
   TIGR03611 180 rrinaLeafdvdarldriklpvlli 204
                  ri+   afd++a++  +++pvl +
  MMETSP1137-20121227|8266_1 221 IRIQDASAFDFEAAARAVRCPVLCL 245
                 5888889999999999999999865 PP

>> TIGR01250  pro_imino_pep_2: proline-specific peptidases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.3   0.0   2.6e-08   1.8e-05      14     129 ..      35     146 ..      23     163 .. 0.89

  Alignments for each domain:
  == domain 1    score: 22.3 bits;  conditional E-value: 2.6e-08
   TIGR01250  14 vlftkvkeegekikllvlHGGPgssheyleslkellkegvevilYDQLGsgkSdqPddsdeklltidrfvdEleevrekLaldkfyllgqSwGglLaqeYalkyqqhlkgliissm 129
                 +++   k ++e +++l+ H  P s+ ey e    +++ g+ ++  D LG g+S++P  s      id + d   +v+++L+l++f   g+  G l  +  a +y++ + g ++ + 
  MMETSP1137-20121227|8266_1  35 QVHSPSKSSSELAPVLAFHMSPRSTDEYAEAAPLISATGRLMVAIDELGYGRSSNPVRS----CSIDEIADCGLAVADELGLKRFVAAGSLLGCLVSISLASRYPERVCGTVLTNL 146
                 4555567778899*******************999999******************774....58999999999************************************999885 PP

>> TIGR01738  bioH: putative pimeloyl-BioC--CoA transferase BioH
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0   1.7e-06    0.0012      25      96 ..      67     144 ..      53     160 .. 0.78

  Alignments for each domain:
  == domain 1    score: 16.4 bits;  conditional E-value: 1.7e-06
   TIGR01738  25 eeLsahftls.lvDLPGyGd.saelralslaevaeailaqapa....kaiwlGWsLGGLvalhlalthpdkvrsLvlv 96 
                 + +sa+ +l  ++D  GyG+ s+ +r+ s++e+a+  la a++    + +  G  LG Lv++ la ++p++v + vl+
  MMETSP1137-20121227|8266_1  67 PLISATGRLMvAIDELGYGRsSNPVRSCSIDEIADCGLAVADElglkRFVAAGSLLGCLVSISLASRYPERVCGTVLT 144
                 5566666654168999****7788***********777777652222467789999****************998886 PP

>> TIGR01249  pro_imino_pep_1: prolyl aminopeptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   3.2e-05     0.022      28     137 ..      47     155 ..      20     190 .. 0.75

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 3.2e-05
   TIGR01249  28 kPvvflhGGPGsGtde.ecrkffdpevyrivlldqrGaGkskphaileenttwdlvadie.klreklkikkWlvfGGsWGstlalayaqkhPekvtklvlrgifllrkkele 137
                  Pv+ +h  P s  +  e+          +v +d  G G+s     +    + d +ad    + ++l++k++   G   G  +++  a ++Pe+v + vl  ++  r k  e
  MMETSP1137-20121227|8266_1  47 APVLAFHMSPRSTDEYaEAAPLISATGRLMVAIDELGYGRSSNP--VR-SCSIDEIADCGlAVADELGLKRFVAAGSLLGCLVSISLASRYPERVCGTVLTNLYHYRAKAEE 155
                 67777777777654431344455555566788999999998643..33.3445556666526899***********99**************************99987544 PP

>> TIGR03695  menH_SHCHC: 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   5.5e-05     0.037      14     102 ..      58     144 ..      46     148 .. 0.84

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 5.5e-05
   TIGR03695  14 skedwqalieele.ekfsvlalDLpgHGkskslkekeakdfeeaaqellkelleklkiekviLvGYSlGGRialalaleaperleglile 102
                 s++++ ++++ ++ +   ++a+D +g G+s+++   +  +++e+a+     + ++l+ ++++  G  lG  + ++la ++per+ g +l 
  MMETSP1137-20121227|8266_1  58 STDEYAEAAPLISaTGRLMVAIDELGYGRSSNP--VRSCSIDEIADC-GLAVADELGLKRFVAAGSLLGCLVSISLASRYPERVCGTVLT 144
                 66777777877762344569***********99..678899999988.88899999*****************************99986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (318 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       111  (0.02706); expected 82.0 (0.02)
Passed bias filter:                      106  (0.0258411); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.27u 0.15s 00:00:00.42 Elapsed: 00:00:00.52
# Mc/sec: 807.16
//
Query:       MMETSP1137-20121227|8267_1  [L=111]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (111 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       182  (0.0443686); expected 82.0 (0.02)
Passed bias filter:                      166  (0.0404681); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.11s 00:00:00.28 Elapsed: 00:00:00.28
# Mc/sec: 523.24
//
Query:       MMETSP1137-20121227|8268_1  [L=154]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (154 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        83  (0.020234); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.15s 00:00:00.31 Elapsed: 00:00:00.34
# Mc/sec: 597.83
//
Query:       MMETSP1137-20121227|8269_1  [L=171]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.8e-11   41.7   0.1    1.8e-11   41.7   0.1    1.9  2  TIGR00601 rad23: UV excision repair protein Rad23


Domain annotation for each model (and alignments):
>> TIGR00601  rad23: UV excision repair protein Rad23
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   1.6     0.047   1.9e+02      95     141 ..       4      51 ..       1      65 [. 0.53
   2 !   41.7   0.1   4.3e-15   1.8e-11       2      67 ..      77     139 ..      76     144 .. 0.95

  Alignments for each domain:
  == domain 1    score: -1.2 bits;  conditional E-value: 0.047
   TIGR00601  95 ptptp.satpasvaekksaaPasaveeessaeeeatatalesedtsae 141
                 p+p+p s++p++ a++++ a     +++  ++   +a+a  + ++  +
  MMETSP1137-20121227|8269_1   4 PAPAPpSPPPSAQASSHARALCPMLADGDDPTPDGAAAACLKAAPRMN 51 
                 566665566666666666665555555544444444444444444333 PP

  == domain 2    score: 41.7 bits;  conditional E-value: 4.3e-15
   TIGR00601   2 kltlKtlkqqkfkidlepdetvkelKekiesekgkdayevaqqkLiyaGkiLsDdktvkeykikek 67 
                 ++ +Ktl ++++++d+e  +t+  +K ki++++g   ++ ++q+Li+ Gk L D kt+ +y i+++
  MMETSP1137-20121227|8269_1  77 QIFVKTLSGKTVTVDVEEGDTIADVKAKIQDKEG---IPPKEQRLIFGGKQLDDRKTIGDYSIEQE 139
                 5789******************************...**************************875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (171 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        87  (0.0212092); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.18u 0.13s 00:00:00.31 Elapsed: 00:00:00.37
# Mc/sec: 610.00
//
Query:       MMETSP1137-20121227|8270_1  [L=167]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (167 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       182  (0.0443686); expected 82.0 (0.02)
Passed bias filter:                      119  (0.0290102); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.16s 00:00:00.34 Elapsed: 00:00:00.28
# Mc/sec: 787.22
//
Query:       MMETSP1137-20121227|8271_1  [L=366]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.2e-16   56.7   0.0    2.8e-16   56.4   0.0    1.0  1  TIGR03903 TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
      8e-06   23.3   0.0    1.3e-05   22.6   0.0    1.3  1  TIGR03724 arch_bud32: Kae1-associated kinase Bud32


Domain annotation for each model (and alignments):
>> TIGR03903  TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.4   0.0   1.3e-19   2.8e-16      20     239 ..      87     301 ..      70     307 .. 0.79

  Alignments for each domain:
  == domain 1    score: 56.4 bits;  conditional E-value: 1.3e-19
   TIGR03903  20 rlvaRFrReialCarLshPnivaLlDsGeaedgllFavFeyveGrtlrevLaa..dGaLpaaetgrLmlqvLDalaaahdaGvvhRDLkPqnimvsaadveshakvLDFGigaLlpgvedadeatltrttevlGsPaYaaPeqLR...gepv..taksDlYaWGLivleCLtGkrvvqGasvaevlykqLsPvdvslPsaiaghpLg.evLRkalnkdvrqRaasaea 239
                 r+   +r+e ++   L hPni++L+   +++   +F v     G  l  +  +    + p  e  r     L a+ + hd+G+vhRD+kP n+++s+ +v    k+ DFG+   lp+ +          t+v G+  + aPe +R   ge      + Dl+  GL++   L G++  +  +  e l+  L   d s+P+       +  ++ k l  d+rqR  ++e 
  MMETSP1137-20121227|8271_1  87 RHDSDWRKEPEMLRTLMHPNIIQLIATXQTPC-SMFIVMLPELGGDLHSLARSlpGNVFPESEAKRYASSLLQAVQHIHDRGIVHRDIKPSNVLLSVGGVL---KLADFGLCEQLPDSGM--------LTNVCGTHDFLAPEMIRcghGEEAgyGLAVDLWGVGLLLYVLLFGHNPFEHRTEIETLQAILR-ADYSFPEHSSVSSAAkSLISKLLVADPRQRLSASEC 301
                 55667899999******************999.67777655555555544332214588999***********************************9986...677*********9988........46899***********96554433114578****************99999999999887775.688999876554444156677888899988766655 PP

>> TIGR03724  arch_bud32: Kae1-associated kinase Bud32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.6   0.0   6.4e-09   1.3e-05      92     138 ..     149     196 ..     129     202 .. 0.86

  Alignments for each domain:
  == domain 1    score: 22.6 bits;  conditional E-value: 6.4e-09
   TIGR03724  92 elellkevGelvgklHkagivhgDlttsNiivk.ddklyliDfGLgkk 138
                  +++++++ ++v ++H+ givh D+ +sN++++ ++ l l DfGL ++
  MMETSP1137-20121227|8271_1 149 AKRYASSLLQAVQHIHDRGIVHRDIKPSNVLLSvGGVLKLADFGLCEQ 196
                 34788888899*********************7477788******875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (366 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        60  (0.014627); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.29u 0.18s 00:00:00.47 Elapsed: 00:00:00.57
# Mc/sec: 832.90
//
Query:       MMETSP1137-20121227|8272_1  [L=661]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (661 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       126  (0.0307167); expected 82.0 (0.02)
Passed bias filter:                      112  (0.0273038); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.18s 00:00:00.63 Elapsed: 00:00:00.48
# Mc/sec: 1817.60
//
Query:       MMETSP1137-20121227|8273_1  [L=241]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.7e-65  216.6   4.8    4.6e-65  216.4   3.3    1.2  1  TIGR00496 frr: ribosome recycling factor


Domain annotation for each model (and alignments):
>> TIGR00496  frr: ribosome recycling factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  216.4   3.3   1.1e-68   4.6e-65       2     176 .]      68     241 .]      31     241 .] 0.98

  Alignments for each domain:
  == domain 1    score: 216.4 bits;  conditional E-value: 1.1e-68
   TIGR00496   2 ekmdkslealkeelskiRtgranpsllDkilveyygaktplkqlasvtvedartlvikpfdkslinaiekailkadlglnPssdGekirvnlPplteErRkelvkvvkkiaEeakvavRnvRrDandkvkklekdkeisEdeekklkeeiqkitdeyikkideilkdkekellev 176
                 +k++ksl+++ e+ls+iR gra +++lD+++veyyga+tpl+qlasvt++ a++lv++ +dks +++ie+a++++dlg++P++dG++ir+n+P lt+ErRkel+k++ ki+Ee kva+RnvRrDa dk+kk++kd   sEde++++++e+qk  ++y + id+++ ++eke++++
  MMETSP1137-20121227|8273_1  68 KKLKKSLASVTEQLSTIRVGRATSDMLDRVQVEYYGAPTPLNQLASVTTPSASQLVVDAYDKSCLGDIERALMESDLGMTPNNDGNVIRLNVPSLTAERRKELAKTASKIGEEGKVALRNVRRDAIDKIKKMQKDG-LSEDESRDAQDELQKSLKKYESEIDSSVSQREKEIMTI 241
                 6889**********************************************************************************************************************************97.67**********************************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (241 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       314  (0.076548); expected 82.0 (0.02)
Passed bias filter:                      147  (0.0358362); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.25u 0.17s 00:00:00.42 Elapsed: 00:00:00.36
# Mc/sec: 883.59
//
Query:       MMETSP1137-20121227|8275_1  [L=389]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (389 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        86  (0.0209654); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.17s 00:00:00.45 Elapsed: 00:00:00.28
# Mc/sec: 1833.71
//
Query:       MMETSP1137-20121227|8276_1  [L=64]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        81  (0.0197465); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.13s 00:00:00.26 Elapsed: 00:00:00.28
# Mc/sec: 291.29
//
Query:       MMETSP1137-20121227|8278_1  [L=84]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (84 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        62  (0.0151146); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.13s 00:00:00.25 Elapsed: 00:00:00.26
# Mc/sec: 426.43
//
Query:       MMETSP1137-20121227|8280_1  [L=314]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (314 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       124  (0.0302292); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.17s 00:00:00.42 Elapsed: 00:00:00.70
# Mc/sec: 592.07
//
Query:       MMETSP1137-20121227|8281_1  [L=132]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (132 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       173  (0.0421745); expected 82.0 (0.02)
Passed bias filter:                      140  (0.0341297); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.13s 00:00:00.30 Elapsed: 00:00:00.30
# Mc/sec: 580.75
//
Query:       MMETSP1137-20121227|8282_1  [L=113]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (113 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        70  (0.0170648); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.15s 00:00:00.30 Elapsed: 00:00:00.26
# Mc/sec: 573.64
//
Query:       MMETSP1137-20121227|8283_1  [L=574]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   1.4e-222  737.9   6.7   1.6e-222  737.7   4.6    1.0  1  TIGR00110 ilvD: dihydroxy-acid dehydratase
    7.1e-67  223.8   1.9    1.6e-66  222.7   1.3    1.4  1  TIGR01196 edd: phosphogluconate dehydratase
    4.1e-65  217.8   8.9      7e-63  210.5   6.2    2.0  1  TIGR03432 yjhG_yagF: putative dehydratase, YjhG/YagF family


Domain annotation for each model (and alignments):
>> TIGR00110  ilvD: dihydroxy-acid dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  737.7   4.6  1.2e-225  1.6e-222       2     542 ..      36     573 ..      35     574 .] 0.99

  Alignments for each domain:
  == domain 1    score: 737.7 bits;  conditional E-value: 1.2e-225
   TIGR00110   2 arallkatGlkdedlekPiiavvnsyteivPghvhlkdlaklvkeeieaaGgvakefntiavsDGiamgheGmkysLpsreiiaDsvetvvkahalDalvvissCDkivPGmlmaalrlniPaivvsGGpmeagktklsekidlvdvfeavgeyaagklseeeleeiersacPtagsCsGlftansmacltealGlslPgsstllatsaekkelakksgkrivelvkknikPrdiltkeafenaitldlalGGstntvLhllaiakeagvklslddfdrlsrkvPllaklkPsgkkviedlhraGGvsavlkeldkegllhkdaltvtGktlaetlekvkvlrvdqdvirsldnpvkkegglavLkGnlaeeGavvkiagveedilkfeGpakvfeseeealeailggkvkeGdvvviryeGPkGgPGmremLaPtsalvglGLgkkvaLitDGrfsGgtrGlsiGhvsPeaaegGaialvedGDkikiDien.rkldlevseeelaerrakakkkearevkgaLakyaklvssadkGavld 542
                 ++a+l+a+Gl+d++l  P++++++ ++e +P+ +hl  l++ +k++i++aG v  +fnti+vsDGi+mg++Gm ysL+sreiiaDs+etv+ ++++D+l++i+ CDk++PG +ma++r+n+P+++++GG++ ag  k++  +d+v++f+a+g+y +g ++ee++++i ++acP+ag+C+G++tan+ma++ ea+G+slP+ss ++a    k+e ++++gk +  l++k+ikP+di+t++afena++l++alGGstn+vLhl+a+ak ++v ls+ddf+++s++vP +a+lkPsgk+v+edlh+ GGv+avlk l +egl++  ++tvtGktlae+l++ + l+++q++i ++++p+k  g+l++L+G+la+eG+v+ki+g+e   l feG+a v++seee+l+a+ +gk+ +G vv+iryeGPkGgPGm+emL+Ptsa++g+GLg+kva++tDGrfsGg++G++iGhv+Pea +gG+ialv+dGD+i+i  ++ +++dl+vseeel +rra++k++  +  +g+L k+ k vssa++G+v+d
  MMETSP1137-20121227|8283_1  36 SQAMLHALGLNDAQLALPQVGIASVWWEGNPCXMHLLSLSEDAKKSINEAGMVGLRFNTIGVSDGISMGTDGMSYSLQSREIIADSIETVMGGQWYDGLITIPGCDKNMPGCVMAMARVNRPSLMMYGGTIRAGCGKAGTPLDIVSAFQAYGQYISGSIDEETRSDIIHNACPGAGACGGMYTANTMASAIEAMGMSLPYSSCTPAY--MKAEECTRAGKAMRVLLEKDIKPSDIMTRSAFENAMVLIMALGGSTNAVLHLIAMAKAINVPLSIDDFQKVSDRVPFIADLKPSGKYVMEDLHEIGGVPAVLKLLLEEGLIDGSCMTVTGKTLAENLAELPGLKEGQQIITPVNKPIKPSGHLQILYGSLAPEGSVAKITGKEG--LSFEGTACVYDSEEEMLKALEDGKIGAGAVVIIRYEGPKGGPGMPEMLTPTSAIMGAGLGDKVAMLTDGRFSGGSHGFIIGHVTPEAQVGGPIALVRDGDRISIQCDSaKRIDLHVSEEELSARRAAWKAPALKAERGTLYKFIKNVSSASEGCVTD 573
                 79********************************************************************************************************************************************************************************************************99987..57899*************************************************************************************************************************************************************************..9*******************************************************************************************************9975378********************************************97 PP

>> TIGR01196  edd: phosphogluconate dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  222.7   1.3   1.2e-69   1.6e-66     109     597 ..      96     570 ..      73     573 .. 0.84

  Alignments for each domain:
  == domain 1    score: 222.7 bits;  conditional E-value: 1.2e-69
   TIGR01196 109 amcdGvtqGedGmelsllsrdvialstaiglshnmfdgalflGvcdkivpGlliaalsfGhlpavfvpaGpmasGlenk....ekakvrq...lfaeGkvdreellksemasyhapGtctfyGtansnqmlvelmGlhlpgasfvnpntplrdaltreaakrlarltakngevlplaelideksivnalvgllatGGstnhtlhlvaiaraaGiilnwddlselsdlvpllarvypnGkadvnhfeaaGGlsflirellkeGllhedvetvagkGlrry.tkepfledgkleyreaaeksldedilrkvdkpfsaeGGlkllkGnlGr..avikvsavkeesrvieapaivfkdqaellaafkagelerdlvavvrfqGpka.nGmpelhklttvlGvl.qdrgfkvalvtdGrlsGasGkvpaaihvtpealegGalakirdGdlirldavng.elevlvddaelkareleeldlednelGlGrelfaalrekvssaeeGa 597
                  + dG++ G dGm  sl sr++ia s    +  + +dg + +  cdk +pG ++ a++  + p++++ +G + +G        + + + q   ++  G +d e   +   ++  ++G+c    tan+    +e mG+ lp +s   p     ++ tr  a +++r+   + +++p +++++  ++ na+v ++a GGstn  lhl+a+a+a  + l+ dd++++sd vp +a + p Gk  ++ ++  GG++ +++ ll+eGl+     tv+gk l +  ++ p l++g             ++i+ +v+kp +++G l++l G l    +v k++   +e    e  a v+++++e+l+a++ g++    v+++r++Gpk   Gmpe+  lt++  ++    g kva++tdGr+sG s       hvtpea+ gG++a +rdGd+i +++ ++ ++++ v + el ar     + +++ l   r  + ++ ++vssa eG+
  MMETSP1137-20121227|8283_1  96 GVSDGISMGTDGMSYSLQSREIIADSIETVMGGQWYDGLITIPGCDKNMPGCVM-AMARVNRPSLMMYGGTIRAGCGKAgtplDIVSAFQaygQYISGSIDEETRSDIIHNACPGAGACGGMYTANTMASAIEAMGMSLPYSSCT-PAYMKAEECTR--AGKAMRVL-LEKDIKP-SDIMTRSAFENAMVLIMALGGSTNAVLHLIAMAKAINVPLSIDDFQKVSDRVPFIADLKPSGKYVMEDLHEIGGVPAVLKLLLEEGLIDGSCMTVTGKTLAENlAELPGLKEG-------------QQIITPVNKPIKPSGHLQILYGSLAPegSVAKIT--GKEGLSFEGTACVYDSEEEMLKALEDGKIGAGAVVIIRYEGPKGgPGMPEM--LTPTSAIMgAGLGDKVAMLTDGRFSGGSHGFI-IGHVTPEAQVGGPIALVRDGDRISIQCDSAkRIDLHVSEEELSARRA---AWKAPALKAERGTLYKFIKNVSSASEGC 570
                 578************************************************966.566678899999999999988765222233444441116778999999999999999999*****999******************9975.55444555554..44555644.5778999.689999*******************************************************************************************9997540344555544.............68**********************8622567765..5788899************************************736****8..67766666246899************996654.45***********************98765169999********994...4566667777777777778888888886 PP

>> TIGR03432  yjhG_yagF: putative dehydratase, YjhG/YagF family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  210.5   6.2   5.1e-66     7e-63      90     580 ..      75     534 ..      67     557 .. 0.84

  Alignments for each domain:
  == domain 1    score: 210.5 bits;  conditional E-value: 5.1e-66
   TIGR03432  90 vkaaaeelkrkgavpfaaavsdpcdGrtqGttGmfdslpyrndaaivlrrlirslptrkgvlGvatcdkGlpamlmalaatkdlatvlvpGGvtllp..eeg...edaGkvqtiGaryakgeitleeaaeagckacaspGGGcqflGtaatsqvvaealGlalphsalapsGqpiwldlarrsaraalelekkGlstkdiltdkaienalvvhaafGGstnlllhipaiahaaglrrptvddwkrinkkvprlvdalpnGpvghptvkvflaGgvpevmlhlrklGlldedvktvtGetldelldwwekserreslkkrlrerdgvdpddvilspakakergltstvtfpkGnlapeGsvikstaidpsvvdedGvyrkkGkakvfvseksaikaikhekieaGdvlvligrGplG.sGmeetyqvtsalkylsfgkhvalitdarfsGvstGaciGhvspealaGGpiGklrdGdlieividrnkleGtvnlvgde 580
                  ++a + +++ g v          dG + Gt+Gm  sl  r+  a  +  ++       g++ +  cdk +p  +ma+a   + +++++ GG + ++  ++g   +     q+ G +y  g i  e  +++  +ac  + G c  + ta t     ea+G++lp+s+ +p+   +  +  +r+ +a+  l +k ++ +di+t  a+ena+v+  a+GGstn +lh+ a+a+a ++   ++dd++++  +vp + d  p G        +   Ggvp v+  l + Gl+d + +tvtG+tl e+l                    g++  + i++p +   +  +  + +  G lapeGsv k t       +++G    +G+a v+ se++ +ka+ ++ki aG v+++  +Gp G  Gm e+   tsa+     g +va++td rfsG s G  iGhv+pea  GGpi  +rdGd i i+ d++k   +++l ++e
  MMETSP1137-20121227|8283_1  75 SEDAKKSINEAGMVGLRFNTIGVSDGISMGTDGMSYSLQSREIIADSIETVMGGQ-WYDGLITIPGCDKNMPGCVMAMAR-VNRPSLMMYGGTIRAGcgKAGtplDIVSAFQAYG-QYISGSIDEETRSDIIHNACPGA-GACGGMYTANTMASAIEAMGMSLPYSSCTPAY--MKAEECTRAGKAMRVLLEKDIKPSDIMTRSAFENAMVLIMALGGSTNAVLHLIAMAKAINVPL-SIDDFQKVSDRVPFIADLKPSGKYVME--DLHEIGGVPAVLKLLLEEGLIDGSCMTVTGKTLAENLAEL----------------PGLKEGQQIITPVNKPIKP-SGHLQILYGSLAPEGSVAKIT-------GKEGL-SFEGTACVYDSEEEMLKALEDGKIGAGAVVIIRYEGPKGgPGMPEMLTPTSAIMGAGLGDKVAMLTDGRFSGGSHGFIIGHVTPEAQVGGPIALVRDGDRISIQCDSAK---RIDLHVSE 534
                 566777888888888877788889**********************999999876.568******************986.5789999999987654115554422233344444.79999**********99999765.67999************************986..56788999999*999*************************************99999888765.79********************76655..56678****************************9998643................3333444455555433332.44577789**********977.......56776.568**********************************9636*****************************************************************987...45555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (574 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       106  (0.0258411); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.51u 0.17s 00:00:00.68 Elapsed: 00:00:00.43
# Mc/sec: 1761.90
//
Query:       MMETSP1137-20121227|8284_1  [L=501]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.7e-52  175.1   9.0    9.4e-49  164.5   3.2    2.9  3  TIGR02349 DnaJ_bact: chaperone protein DnaJ
    3.8e-18   63.1   0.5    4.4e-17   59.6   0.1    2.0  2  TIGR03835 termin_org_DnaJ: terminal organelle assembly protein TopJ


Domain annotation for each model (and alignments):
>> TIGR02349  DnaJ_bact: chaperone protein DnaJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  164.5   3.2   4.6e-52   9.4e-49       3     295 ..      34     286 ..      32     299 .. 0.91
   2 ?   -2.7   0.2       0.3   6.2e+02     146     177 ..     321     352 ..     315     386 .. 0.66
   3 !   11.6   0.0   1.4e-05     0.028     304     350 ..     394     442 ..     361     444 .. 0.77

  Alignments for each domain:
  == domain 1    score: 164.5 bits;  conditional E-value: 4.6e-52
   TIGR02349   3 YeiLgvskdAseeeikkAYrklakkyHPDrnkgekeaeekfkeineAyevLsdeekraqYDqfghagleggaggggagfegfeasefgdigdifeeffgggggsgrr.rskarrgedlevelelsleeavkGvekeielerkekCetCkGsGakkgsklktCktCgGtGqvrkqqgtllgffqsqqtCseCkGeGkiikekCkeCkGkgrvkekkkievkiPaGvedgerlrvegkGeagenggesGdLyvevkvkehkiferegndllvevpisfvqailgeeievptlegkv 295
                 Ye+Lgv+kdA ++ ikkAYrkla k HPD+   +    ekfke+++A+++L de+kr+ YD+ g++glegg+ g             g+  dif+ + g+g+    + ++  ++ge++   l+++le+++kG + +++l+rk           +k+++++ C+ C+G+G  +++ ++  ++ q+q+ C++C+G+G+i+++          +k +++++v+iP+G  d+++++ ++k ++   +ge+Gd+  +++ ++h+ f+r+g+dl++e +is+ +a  g +++++ l+++v
  MMETSP1137-20121227|8284_1  34 YETLGVEKDAPQDAIKKAYRKLAVKLHPDKGG-D---PEKFKEVQKAFDILGDERKREIYDRHGEEGLEGGGDG-------------GGPADIFDVLSGRGR----KpQRGVKKGENMVHPLKVTLEQIYKGSSRTLRLTRKV---------IDKERGVERCSGCQGQGYKIQTIRMGPMIQQVQKVCDSCGGQGTIFRQ----------NKVQETLDVHIPKGAPDQHKINFSEKADE-IPDGEAGDVVFVLQEQPHSDFKRKGDDLYIERSISLSEALCGFKMQIKHLDDRV 286
                 *****************************998.5...59******************************95322.............344589999888554....447899*****************************97.........5778899************999998888888999************98..........78899*********************995.7778**********************************************9876 PP

  == domain 2    score: -2.7 bits;  conditional E-value: 0.3
   TIGR02349 146 CetCkGsGakkgsklktCktCgGtGqvrkqqg 177
                 C+  +   a + ++lk+Ck+   +Gq r +  
  MMETSP1137-20121227|8284_1 321 CPGLEDAAAAETEDLKVCKKACESGQLRGKGI 352
                 55555566777788888887666777655443 PP

  == domain 3    score: 11.6 bits;  conditional E-value: 1.4e-05
   TIGR02349 304 qsgevl.rlkgkGvkklksk.krGdllvkvkvevPkklskeekelleel 350
                 ++++++  ++g+G+++lks  ++G+l++ ++ve+P +l+++ + +l +l
  MMETSP1137-20121227|8284_1 394 KDKRMMkAVQGEGLPRLKSPfEHGNLFILLNVEFPATLDAQCQSALMKL 442
                 3333331689*********99********************99999876 PP

>> TIGR03835  termin_org_DnaJ: terminal organelle assembly protein TopJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.6   0.1   2.1e-20   4.4e-17       4      85 ..      33     111 ..      31     115 .. 0.95
   2 !    1.5   0.0    0.0077        16     674     750 ..     145     262 ..     125     267 .. 0.76

  Alignments for each domain:
  == domain 1    score: 59.6 bits;  conditional E-value: 2.1e-20
   TIGR03835   4 yyevLgidrDadeqeikkafrkLakkyhPDrnkaadaakifaeineandvLsnPkkraryDkyGhDGvDreddldfdadvfd 85 
                  ye Lg+++Da ++ ikka+rkLa k hPD+  +++    f+e+  a+d+L + +kr+ yD++G +G+++ +d    ad+fd
  MMETSP1137-20121227|8284_1  33 LYETLGVEKDAPQDAIKKAYRKLAVKLHPDKGGDPE---KFKEVQKAFDILGDERKREIYDRHGEEGLEGGGDGGGPADIFD 111
                 5******************************99997...4*********************************999999998 PP

  == domain 2    score: 1.5 bits;  conditional E-value: 0.0077
   TIGR03835 674 qlkeikytrkvvdgn..vest......................................tneaitLeikLsitsqleisaifkGfGhdfgkgl.GDLkvvlkvipsnffqikeddlhv 750
                   + ++ trkv+d +  ve +                                       +   tL++++++ +  +  ++f    ++ ++g  GD+  vl+  p + f+ k ddl+ 
  MMETSP1137-20121227|8284_1 145 SSRTLRLTRKVIDKErgVERCsgcqgqgykiqtirmgpmiqqvqkvcdscggqgtifrqNKVQETLDVHIPKGAPDQHKINFSEKADEIPDGEaGDVVFVLQEQPHSDFKRKGDDLYI 262
                 55677888888655422455566666666666666666666667777777888888876455569**************************988***********9999999999975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (501 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       105  (0.0255973); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.14s 00:00:00.54 Elapsed: 00:00:00.54
# Mc/sec: 1224.57
//
Query:       MMETSP1137-20121227|8285_1  [L=837]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0048   13.1  34.1     0.0077   12.4  23.6    1.3  1  TIGR00580 mfd: transcription-repair coupling factor
  ------ inclusion threshold ------
        1.8    3.9  74.1          3    3.2  51.4    1.3  1  TIGR02168 SMC_prok_B: chromosome segregation protein SMC


Domain annotation for each model (and alignments):
>> TIGR00580  mfd: transcription-repair coupling factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.4  23.6   3.7e-06    0.0077      82     336 ..     393     650 ..     378     712 .. 0.57

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 3.7e-06
   TIGR00580  82 rakkkaaaveeaektek.ealkegkkkaglekllpllfee.lsslldelkdetl.illdepekvekaaee...lereleefleaaleakklisaerlsleveelvleakalslsevelesalslkaseaieaaqeaeraelaeilalkeellralkagfkvvllaesesqaerlksllkesdiaakvta.esskllkeavkavlegelsegfal.veaelaviteselfgervkakkk.kkkkkskateelaelkegdlvVHkd 336
                  ++++aa+++ a++  + +  +e    a  ++ l+ ++ +  ssl++ l+d  + +l++++++++  +++   +++ l++  +++++a+kl++a++++++++++  ++ + +l + ++++   l +++a      a++++ ++++al+e+ l+ l++ f++    + +++   +++l +++  + + t+ ++++ ++++++ + +++l+++++   +a l  ++ ++l+ +r++ +++ ++++++ +++ + e + g+   H++
  MMETSP1137-20121227|8285_1 393 AMASAAASAAVARHNGSqKLAAEAVLAAAAKAHLGNIYPNsSSSLVEPLPDSMPqLLAQQYQQMRMLQQHqanQQQALQQQAQQKMAANKLLQAQQQHVQQQAQQQQQAQQQLLQAQQQQGAPLAQMKAH-----AKQQQAQAQQALLESRLQSLHQHFAKETRECRQQEEMATQQLAQQQ-AQDQATQqQQHHQQQTQQHRQQHAQLQQAQQQqSTALLNSLAADNLLLARQAEQQQtQQQQTQSQARWFMEYQRGQQQLHDQ 650
                 3333333333333322235556666777778888888877789999999999994444444444333333000333334444444444444544444444444443333333333333332222222222.....2223344455555555666666666666666444444444444443.33333331222222222222233344444444044445556677777666666555055555666699********999987 PP

>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2  51.4    0.0014         3     280     519 ..     450     687 ..     422     706 .. 0.74

  Alignments for each domain:
  == domain 1    score: 3.2 bits;  conditional E-value: 0.0014
   TIGR02168 280 eeeleelqkelqelkaeisrleqeieilkerleqlekeleeleeqleeleskkeeleeelaeleeeleelkeelesleaeleeaeaeleelesrleeleeeleelrsevaeleeqlaslnaelerleaeleqleerrerlkqeieelekkleeaeaelkelqeeleeleeeleeleeelerleealeeleeeleeaeqalqkaeeelaqlqarle..sleslqenleglseg.vkallknksk 519
                  +++++++   q  ++++++l+q+ ++  +  + l+++++++++q +++++ +++l ++ +++ + l+++k+  ++++a++++     + lesrl++l +++ ++ +e ++ ee ++++ a+++ +++  +q ++++++++q+++++++ +++ +++  +l ++l+  +  l+ ++e++++ +++ +++ + + e ++  q+++++++q++++ +  ++ +++++l++ s++ ++++l ++ k
  MMETSP1137-20121227|8285_1 450 AQQYQQMRMLQQHQANQQQALQQQAQQKMAANKLLQAQQQHVQQQAQQQQQAQQQLLQAQQQQGAPLAQMKAHAKQQQAQAQQ-----ALLESRLQSLHQHFAKETRECRQQEEMATQQLAQQQAQDQATQQQQHHQQQTQQHRQQHAQLQQAQQQQSTALLNSLAADNLLLARQAEQQQTQQQQTQSQARWFMEYQRGQQQLHDQMEQVRQQQKqeLMMQQKSQLSEPSQEtASEALSEQGK 687
                 44555555555666667777777777777777777777777776666666666666555555555555555555555555544.....78999999999999999999999999999999999999999999999999999988888888888888889999999999999999999999999999999999999999999999999988765441155555555555544404444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (837 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                      1126  (0.2745); expected 82.0 (0.02)
Passed bias filter:                      160  (0.0390054); expected 82.0 (0.02)
Passed Vit filter:                        90  (0.0219405); expected 4.1 (0.001)
Passed Fwd filter:                        29  (0.00706972); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.89u 0.18s 00:00:02.06 Elapsed: 00:00:01.95
# Mc/sec: 566.54
//
Query:       MMETSP1137-20121227|8286_1  [L=386]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (386 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       146  (0.0355924); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.17s 00:00:00.47 Elapsed: 00:00:00.33
# Mc/sec: 1543.87
//
Query:       MMETSP1137-20121227|8287_1  [L=341]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.4e-85  282.0   0.0    5.5e-85  281.7   0.0    1.1  1  TIGR01012 Sa_S2_E_A: ribosomal protein S2
      5e-20   69.5   0.0    6.1e-12   43.1   0.0    2.1  2  TIGR01011 rpsB_bact: ribosomal protein S2


Domain annotation for each model (and alignments):
>> TIGR01012  Sa_S2_E_A: ribosomal protein S2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  281.7   0.0   2.7e-88   5.5e-85       2     195 ..       9     203 ..       8     204 .. 0.99

  Alignments for each domain:
  == domain 1    score: 281.7 bits;  conditional E-value: 2.7e-88
   TIGR01012   2 klvpvdkylaagvhlGtqnktkdmekfiykvrsdGlyvldlrktderlklaakflaaie.PedilvvsariygqkpvkkfakvtGakaiaGrfiPGtltnpalkefvePevvvvtdPrvdkqalkeasevgiPivalvdtdnslrfvdlviPannkGkkslaliywllareilknrGvisaeeklevsveeflar 195
                 k+ + +++l++ +hlGt+n++++m ++++k++ dG+++++l +t+++l laa++++aie P+d+ v+sar ygq+++ k++++tGa++iaGrf+PGt+tn+++++f+eP+++++tdPr+d+qa++ea++ +iP++a++dtd++l+++d++iPannkGk+s++l+ywllare+l+ r +i ++++++v+v++f++r
  MMETSP1137-20121227|8287_1   9 KKKDFQMMLSCSTHLGTKNLDFQMTRYVWKRKPDGIHIINLGRTYDKLLLAARIIVAIEnPADVCVISARPYGQRSILKYCQYTGATPIAGRFTPGTFTNQITNKFMEPRLLLLTDPRTDHQAIQEAAYANIPTIAFCDTDSPLKYIDVAIPANNKGKHSIGLLYWLLAREVLRLRRTIPRNQPWDVMVDLFFYR 203
                 678999*******************************************************************************************************************************************************************************************98 PP

>> TIGR01011  rpsB_bact: ribosomal protein S2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.8   0.0   1.1e-09   2.3e-06       6     104 ..      15     111 ..      12     115 .. 0.92
   2 !   43.1   0.0     3e-15   6.1e-12     155     220 ..     116     181 ..     109     186 .. 0.93

  Alignments for each domain:
  == domain 1    score: 24.8 bits;  conditional E-value: 1.1e-09
   TIGR01011   6 elleagvhfGhqtrrwnPkmkkfifeer.ngvhiidLektlqllkeayelvkevvkeekkilFvgtkkqakeivkeeakrvgvayvneRWlGGmLtnfkt 104
                  +l++ +h+G  t+ ++ +m +++++ + +g+hii+L +t+ +l  a  ++  ++++  ++  ++ + + ++++ ++ + +g++ ++ R+  G+ tn  t
  MMETSP1137-20121227|8287_1  15 MMLSCSTHLG--TKNLDFQMTRYVWKRKpDGIHIINLGRTYDKLLLAARIIV-AIENPADVCVISARPYGQRSILKYCQYTGATPIAGRFTPGTFTNQIT 111
                 689999***9..567899*********999****************999886.5789999*************************************766 PP

  == domain 2    score: 43.1 bits;  conditional E-value: 3e-15
   TIGR01011 155 lPdllvvidtkkekiavaearklkiPvvalvdtncdPdlvdyviPgnddairsikLlvklladavl 220
                  P ll++ d++ ++ a++ea   +iP +a +dt++  + +d+ iP+n++  +si Ll  lla  vl
  MMETSP1137-20121227|8287_1 116 EPRLLLLTDPRTDHQAIQEAAYANIPTIAFCDTDSPLKYIDVAIPANNKGKHSIGLLYWLLAREVL 181
                 599*******************************************************99998886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (341 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        65  (0.0158459); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.28u 0.18s 00:00:00.46 Elapsed: 00:00:00.40
# Mc/sec: 1125.21
//
Query:       MMETSP1137-20121227|8289_1  [L=392]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.4e-19   66.3   0.0    3.6e-09   34.3   0.0    2.1  2  TIGR02452 TIGR02452: TIGR02452 family protein


Domain annotation for each model (and alignments):
>> TIGR02452  TIGR02452: TIGR02452 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.9   0.0     2e-11   8.1e-08      26     111 ..     136     221 ..     125     232 .. 0.76
   2 !   34.3   0.0   8.8e-13   3.6e-09     189     265 ..     308     381 ..     294     382 .. 0.88

  Alignments for each domain:
  == domain 1    score: 29.9 bits;  conditional E-value: 2e-11
   TIGR02452  26 aeeleraiqgtklyspeeeevlklepakartelkvvnestl..eaaeelkeseiagevavLNFAsaknPGGgflnGAkAqEEslaraS 111
                 a++ ++a ++ + +++e  +++ + ++ a  +l++v e     e+  +l+  e  +  avLN A+a  PGGg+++G  AqEE++ r  
  MMETSP1137-20121227|8289_1 136 AHFHDLAKKNMQRWKEE-AKTKSSATNGADGQLTIVIEPGDwgEVTGKLT-AEWGQTFAVLNMANAYCPGGGYVEGCPAQEENMFRRT 221
                 56666666666666665.66677777777777777766554115666777.788899**************************98875 PP

  == domain 2    score: 34.3 bits;  conditional E-value: 8.8e-13
   TIGR02452 189 alknRikkvlklaedqnvkalvLGAwGcGvFgndpaevakifkdllkpegsfkgrikevvFaildrskqkailqiFk 265
                  l +R++  l++ ++ n++ +vL A+GcG+F+n +++va ++k+ +     ++ ++  v+Fai+    +  + + Fk
  MMETSP1137-20121227|8289_1 308 DLRRRVRAQLQTLREANIRHVVLSAFGCGAFKNPAKKVATVYKEEID---AVREHFDCVAFAIFAPGYGPDNYTPFK 381
                 5889******************************************9...45679********98776666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (392 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       110  (0.0268162); expected 82.0 (0.02)
Passed bias filter:                      105  (0.0255973); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.22s 00:00:00.55 Elapsed: 00:00:00.55
# Mc/sec: 940.72
//
Query:       MMETSP1137-20121227|8290_1  [L=507]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (507 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       116  (0.0282789); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.14s 00:00:00.47 Elapsed: 00:00:00.47
# Mc/sec: 1423.80
//
Query:       MMETSP1137-20121227|8291_1  [L=282]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (282 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        50  (0.0121892); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.16s 00:00:00.38 Elapsed: 00:00:00.46
# Mc/sec: 809.15
//
Query:       MMETSP1137-20121227|8292_1  [L=644]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.4e-41  138.8   0.3      6e-41  138.3   0.2    1.2  1  TIGR02824 quinone_pig3: putative NAD(P)H quinone oxidoreductase, PIG3 family
    3.6e-16   57.3   0.0      2e-15   54.8   0.0    2.2  1  TIGR02798 ligK_PcmE: 4-carboxy-4-hydroxy-2-oxoadipate aldolase/oxaloacetate decarboxylase
    1.7e-15   54.5   2.4    4.1e-15   53.3   1.7    1.6  1  TIGR02823 oxido_YhdH: putative quinone oxidoreductase, YhdH/YhfP family
    2.2e-15   54.1   2.4    1.6e-13   48.0   0.9    2.4  2  TIGR01751 crot-CoA-red: crotonyl-CoA reductase
    1.3e-11   42.2   3.7    4.4e-07   27.3   1.7    2.5  2  TIGR03989 Rxyl_3153: oxidoreductase, Rxyl_3153 family
    5.8e-06   23.7   1.0    1.1e-05   22.9   0.7    1.4  1  TIGR02825 B4_12hDH: leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase
    2.1e-05   22.3   0.5    5.3e-05   20.9   0.0    1.9  2  TIGR01935 NOT-MenG: RraA family
    2.6e-05   21.0   3.8      0.046   10.3   0.0    2.1  2  TIGR03451 mycoS_dep_FDH: mycothiol-dependent formaldehyde dehydrogenase
    2.7e-05   21.3   0.1      0.074   10.0   0.0    2.3  2  TIGR03366 HpnZ_proposed: putative phosphonate catabolism associated alcohol dehydrogenase


Domain annotation for each model (and alignments):
>> TIGR02824  quinone_pig3: putative NAD(P)H quinone oxidoreductase, PIG3 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  138.3   0.2   1.3e-43     6e-41       1     323 [.     310     642 ..     310     644 .] 0.89

  Alignments for each domain:
  == domain 1    score: 138.3 bits;  conditional E-value: 1.3e-43
   TIGR02824   1 mkaieieeaggpevlels.eaplpelkagevlikvaAaGvNrpDvlQraGkYppppgaseilGLEvaGevvavgeevsk..fkvGdrvcaLvagGgyaeyvvveakqvlpvpeglslveaAalpEtffTv.wsnlfelakl.kagetvLihggasGiGttaiqlakalgakvlvtagsdekleaaekLGadvai...........nyreedFvevvkeetegkGvdvilDivggsyleknlkalakdGrlvliallggakaeldlakllakrltltgstlRarsaeeKaaiaaeleekvwpllaegkvrpvidkvfpledaakAhellessehiGKivL 323
                 mka  ++e+g++ vl+++ e+p+p+l+ g+vl++ + aG+N  D   r+G Y+   +   + G E  G+++a+  + +   fk+G+rv      G y+ y +v+a ++lpvp+++ +  a ++    +T+ + +   +a+l k+ge++Lihg  +G    a q+a+  g+kv+ t+ +  k+e+ ++ G +  i           +y++ d v+ v+e t g+Gv  ++D +g s ++  +++la+ G +v  +   ga   +++ +l+ k + +t   l   +++    ++++  ++++ +l +g++++ +d++fpl++aa+ h++le+++  GK++ 
  MMETSP1137-20121227|8292_1 310 MKAAMVRETGDAGVLKMEtEVPVPSLNDGQVLVNNEFAGINFIDTYHRSGLYA--RDLPFVGGQEGGGKIAALTPKAEAqgFKLGQRVA-YSILGTYSXYSAVPAAKLLPVPDNVPMDVAVSCVVQGLTAhYLTTSAHAQLvKPGEWMLIHGVGGGTCQWAAQMARLKGYKVIGTVAE-GKAETGRATGCHELIvlkevpgksfeDYESVDVVAKVMEITGGEGVKAVIDGIGKSTVDISINSLARRGIFVSFGNASGAVPAFPVLRLIGKSAFVTRPKLLDYTVDREELLMRA--NEIFGWLGSGELKVSVDRTFPLAEAAEGHRYLEEGKSRGKVLY 642
                 8889999*********96378*******************************7..68999*************99887778******95.56679**********************999999888888747788889997467*****************************99964.4555555555555542222233333378889999************************************************************************999988885..78***************************************86 PP

>> TIGR02798  ligK_PcmE: 4-carboxy-4-hydroxy-2-oxoadipate aldolase/oxaloacetate decarboxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.8   0.0   4.5e-18     2e-15      41     195 ..      89     254 ..      56     277 .. 0.78

  Alignments for each domain:
  == domain 1    score: 54.8 bits;  conditional E-value: 4.5e-18
   TIGR02798  41 rpiytgakvagsavtvllqp...........gdnwmlhvaaeqlkegdvvvaavtaesedgyfgdllatslqargargliidagvrdvrdlkemdfpvwskaisa.kgtvkatlgsvnipvvvanalvnpgdvvvadddgvvvvpaakaeavleaaqareaneedkr 195
                 rp+ +g k ag avt+   p           g +   + a e   + +v+v+++  + e    gd+    lq  g  gl+ d+ vrd  ++    fpv+s + +  +g         n  + + ++ v pgd ++ d+dgvvvvpa++a++v + a+ re+ e   +
  MMETSP1137-20121227|8292_1  89 RPLAKGMKCAGRAVTLNFVPqrpdiaadkpaGVDSPEYEAFELCGPKNVLVMSSVGPWE-SVGGDIKFLRLQQLGLGGLVTDGSVRDTDEILGYGFPVFSYSTTPkQGPAAMQPWECNGVIECGKVAVRPGDAIIGDQDGVVVVPASHAQQVYDIAHGREEIEVIIK 254
                 77777777777777776655221221111112222334566777778888888877765.5679999999******************************988751677777778999999***************************************9996544 PP

>> TIGR02823  oxido_YhdH: putative quinone oxidoreductase, YhdH/YhfP family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.3   1.7     9e-18   4.1e-15       2     247 ..     312     564 ..     311     577 .. 0.78

  Alignments for each domain:
  == domain 1    score: 53.3 bits;  conditional E-value: 9e-18
   TIGR02823   2 alvvek.edekvsaeleelsledlpegdvlikvaysslNyKDalaitgkgkvvreyPlvpGiDlaGtvvesedprfkeGdeVivtgydlgvshaGGyseyarvkadwvvplPeglslkeamilGtAGfTAaLsvealekagltpeegevlVtGAtGgVgslavalLsklGyevvavtgkkeeeeylkelGakevisreeleee..........kkkplek...erwagavDtvGgkvlanvlkqlkyggavaacGlaaga 247
                 a +v++  d+ v +  +e+ + +l++g+vl++ +++++N+ D++    +g   r+ P+v+G +  G++++ + ++ ++G +    g +++ s  G ys y  v+a  ++p+P+++ +  a+   + G+TA    +  +++ ++p e  +l+ G  Gg  + a ++    Gy+v+ +++   ++e+ ++ G +e+i  +e+  +           +k +e    e  ++++D +G ++++  +++l  +g+  + G+a+ga
  MMETSP1137-20121227|8292_1 312 AAMVREtGDAGVLKMETEVPVPSLNDGQVLVNNEFAGINFIDTYH--RSGLYARDLPFVGGQEGGGKIAALTPKAEAQGFK---LGQRVAYSILGTYSXYSAVPAAKLLPVPDNVPMDVAVSCVVQGLTAHYLTTSAHAQLVKPGE-WMLIHGVGGGTCQWAAQMARLKGYKVIGTVAE-GKAETGRATGCHELIVLKEVPGKsfedyesvdvVAKVMEItggEGVKAVIDGIGKSTVDISINSLARRGIFVSFGNASGA 564
                 556666566677777789999*********************975..566789***************9988877777755...699999*****************************************999999988888885.899***********************976543.34445566666665554444322000001011124444431225677889999999999999999999999999999987 PP

>> TIGR01751  crot-CoA-red: crotonyl-CoA reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.6   0.0    0.0052       2.4       6      52 ..     308     352 ..     304     361 .. 0.73
   2 !   48.0   0.9   3.4e-16   1.6e-13     139     315 ..     400     564 ..     393     641 .. 0.89

  Alignments for each domain:
  == domain 1    score: 4.6 bits;  conditional E-value: 0.0052
   TIGR01751   6 eemeafairkerdkdprkalrve.qvpvpelgpdevLvavmaagvnyn 52 
                  +m+a ++r++ d      l++e +vpvp l +++vLv+   ag+n+ 
  MMETSP1137-20121227|8292_1 308 ATMKAAMVRETGDAG---VLKMEtEVPVPSLNDGQVLVNNEFAGINFI 352
                 566666666644333...3444327*********************85 PP

  == domain 2    score: 48.0 bits;  conditional E-value: 3.4e-16
   TIGR01751 139 yGslaefalvedsqllPkPkhLtWeeaacllLtaatayrqLvgkkpaelkpGdavLiWGaaGGLGsyaiqlaraaGgipvavvssedkaeiarelGaeavidrqdfdlkgrlpdlnseavkewtkevkrfgkairevlGeedvkivlehsGratfpvsvyvvkrgGmvvicggttGy 315
                  G+++ ++ v + +llP P  +  + a + ++ + ta+   ++ +++ +kpG+ +Li G  GG   +a q+ar +G   ++ v+ e kae  r  G++ +i  ++++ k          ++++  e+  +  +++e++G+e vk v++  G+ t+ +s+    r G+ v  g ++G 
  MMETSP1137-20121227|8292_1 400 LGTYSXYSAVPAAKLLPVPDNVPMDVAVSCVVQGLTAHYLTTSAHAQLVKPGEWMLIHGVGGGTCQWAAQMARLKGYKVIGTVA-EGKAETGRATGCHELIVLKEVPGKS---------FEDY--ESVDVVAKVMEITGGEGVKAVIDGIGKSTVDISINSLARRGIFVSFGNASGA 564
                 589999****************************************************************************97.689**********999877766443.........4444..2334456789*************************************99995 PP

>> TIGR03989  Rxyl_3153: oxidoreductase, Rxyl_3153 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0     4e-06    0.0018       3      86 ..     311     398 ..     309     400 .. 0.75
   2 !   27.3   1.7   9.6e-10   4.4e-07     134     279 ..     396     551 ..     385     642 .. 0.70

  Alignments for each domain:
  == domain 1    score: 15.4 bits;  conditional E-value: 4e-06
   TIGR03989   3 kaavlrelgkkfeve...eielddPkegevkvklaasGlChsdehlvtGdlplekyPvvgGheGaGvvekvGpgv..telkeGdhvvls 86 
                 kaa++re+g++  ++   e+ + + ++g+v+v+ + +G+   d++ ++G ++   +P+vgG eG G + ++ p+   +++k G  v  s
  MMETSP1137-20121227|8292_1 311 KAAMVRETGDAGVLKmetEVPVPSLNDGQVLVNNEFAGINFIDTYHRSGLYAR-DLPFVGGQEGGGKIAALTPKAeaQGFKLGQRVAYS 398
                 7788877766543322124445555789**********************996.6***************9987511567777777665 PP

  == domain 2    score: 27.3 bits;  conditional E-value: 9.6e-10
   TIGR03989 134 qmcllgtfseytvveeasvvkidkdipldkaa.lvgCgvttGfGs.avkaadvkaGdtvvvvGiGG.vGinavqGaavaGarkvvavdpvefkrekal...klGat.....havasie..ealelvaeltnGkgadkaiitvgevegelieealklvak 279
                 + ++lgt+s y  v+ a ++++ +++p+d a+  v  g+t+ + + +++a  vk+G+ +++ G+GG     a q a+++G + + +v   +    +a+   +l         +++++e  + +++v+e+t G+g + +i  +g   +++++  ++ +a+
  MMETSP1137-20121227|8292_1 396 AYSILGTYSXYSAVPAAKLLPVPDNVPMDVAVsCVVQGLTAHYLTtSAHAQLVKPGEWMLIHGVGGgTCQWAAQMARLKGYKVIGTVAEGKAETGRATgchELIVLkevpgKSFEDYEsvDVVAKVMEITGGEGVKAVIDGIG---KSTVDISINSLAR 551
                 4679*************************874244456666665505566669***********872556799*******999877754433333332111222220001122333222245666777777777666554444...3445555555555 PP

>> TIGR02825  B4_12hDH: leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.9   0.7   2.4e-08   1.1e-05      26     177 ..     330     486 ..     309     570 .. 0.71

  Alignments for each domain:
  == domain 1    score: 22.9 bits;  conditional E-value: 2.4e-08
   TIGR02825  26 velpplnngevllealfls...vdpymrva..akrlk.egdtmmgqqvarv.vesknsalpkgtivlassgwtshsisdgkdleklltewpdtlplslalgtvgmpgltayfgll..eicgvkggetvlvnaaagavgsvvgqiaklkgckvvgaagsdek 177
                 v +p ln+g+vl++  f     +d y r +  a+ l   g +  g ++a +  ++  + +  g  v a s   ++s        kll   pd++p+ +a+  v + glta++     +   vk ge +l+    g       q+a+lkg kv+g++    k
  MMETSP1137-20121227|8292_1 330 VPVPSLNDGQVLVNNEFAGinfIDTYHRSGlyARDLPfVGGQEGGGKIAALtPKAEAQGFKLGQRV-AYSILGTYSXYSAVPAAKLL-PVPDNVPMDVAVSCV-VQGLTAHYLTTsaHAQLVKPGEWMLIHGVGGGTCQWAAQMARLKGYKVIGTVAE-GK 486
                 457899999999998887522368999965336666423555555555554056667778888776.55566777777777778876.57**********998.689999875541145669********************************9853.33 PP

>> TIGR01935  NOT-MenG: RraA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   0.0   1.2e-07   5.3e-05      79     149 ..     159     230 ..     130     231 .. 0.86
   2 ?   -2.3   0.0       1.6   7.4e+02      45      66 ..     519     541 ..     507     552 .. 0.63

  Alignments for each domain:
  == domain 1    score: 20.9 bits;  conditional E-value: 1.2e-07
   TIGR01935  79 eengWeGvivnGavrdvaelaeldlGvkalaasPlksek.kgaGevdvpvtlagvtikpgeyvyaDedGilv 149
                 ++ g  G++  G+vrd++e+ +    v + +++P +     +  e +  ++ + v ++pg+ + +D+dG++v
  MMETSP1137-20121227|8292_1 159 QQLGLGGLVTDGSVRDTDEILGYGFPVFSYSTTPKQGPAaMQPWECNGVIECGKVAVRPGDAIIGDQDGVVV 230
                 556788****************************9976515678**************************99 PP

  == domain 2    score: -2.3 bits;  conditional E-value: 1.6
   TIGR01935  45 revle.qpgaGrvLvvDGgGslr 66 
                  +v+e + g+G   v+DG G + 
  MMETSP1137-20121227|8292_1 519 AKVMEiTGGEGVKAVIDGIGKST 541
                 44444245677778899988655 PP

>> TIGR03451  mycoS_dep_FDH: mycothiol-dependent formaldehyde dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.3   0.0    0.0001     0.046       5      72 ..     313     383 ..     309     397 .. 0.74
   2 !    9.7   1.8   0.00016     0.073     167     256 ..     441     540 ..     395     564 .. 0.69

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 0.0001
   TIGR03451   5 viarskg.apveled..ivvpdpgpgevvvkiqacgvchtdlayreggisdefpfllgheaagvveavgeg 72 
                  ++r+ g a v + +  + vp   +g+v+v+ + +g+   d  +r+g  + + pf+ g e  g + a+ ++
  MMETSP1137-20121227|8292_1 313 AMVRETGdAGVLKMEteVPVPSLNDGQVLVNNEFAGINFIDTYHRSGLYARDLPFVGGQEGGGKIAALTPK 383
                 4445444144554440155566667788889999*****************************99987654 PP

  == domain 2    score: 9.7 bits;  conditional E-value: 0.00016
   TIGR03451 167 aavntgevkrgdsvavigvgg.vgeaaiagaalagakkiiavdiddkklerarelgathtvnss...........eedvveaireltggfgadvvidavgrp 256
                 ++  +  vk g+ + + gvgg   + a   a+l g k i +v   + k e+ r  g  + +  +           + dvv+++ e+tgg g+  vid +g+ 
  MMETSP1137-20121227|8292_1 441 TSAHAQLVKPGEWMLIHGVGGgTCQWAAQMARLKGYKVIGTV--AEGKAETGRATGCHELIVLKevpgksfedyeSVDVVAKVMEITGGEGVKAVIDGIGKS 540
                 334445588899999999976145566667888887666555..456667777777766654443344455544235***********************86 PP

>> TIGR03366  HpnZ_proposed: putative phosphonate catabolism associated alcohol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.0   0.0   0.00016     0.074       1      71 [.     333     399 ..     333     404 .. 0.94
   2 !    9.6   0.4   0.00022     0.099     107     241 ..     400     535 ..     398     553 .. 0.67

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 0.00016
   TIGR03366   1 palaeGevlvrvllatvCGsdlhtvaGrregklpsvlGheavGevvalgseeaaavdgeklavGqRvvwsv 71 
                 p+l++G+vlv+   a +   d +  +G  + +lp v G e  G++ al++++    + +  ++GqRv +s+
  MMETSP1137-20121227|8292_1 333 PSLNDGQVLVNNEFAGINFIDTYHRSGLYARDLPFVGGQEGGGKIAALTPKA----EAQGFKLGQRVAYSI 399
                 6799**********************************************97....777899*******98 PP

  == domain 2    score: 9.6 bits;  conditional E-value: 0.00022
   TIGR03366 107 sGglaehvvllaGvaivavpddlpdavaapaaCatatvaaa.leaagd....legrrvlvlGaGmLGLtaaa.aaeerGasrviavDpsaeRrelaaafGaealaeeeelaevr.keatdgravdvalelsGasaaveaale 241
                  G+++ +  ++a  ++++vpd++p +va   +C +   +a  l + ++      g  +l+ G+G      aa +a+ +G  +vi++ +++ ++e   a G ++l+  +e   +  ++ ++   v  ++e++G  ++v+a+++
  MMETSP1137-20121227|8292_1 400 LGTYSXYSAVPA-AKLLPVPDNVPMDVAV--SCVVQGLTAHyLTTSAHaqlvKPGEWMLIHGVGGGTCQWAAqMARLKGY-KVIGT-VAEGKAETGRATGCHELIVLKEVPGKSfEDYESVDVVAKVMEITGG-EGVKAVID 535
                 688888888887.5799********9875..555555544313222223667789********97665555515666677.78775.7788899999999999887666655542444444445556888884.45666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (644 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       123  (0.0299854); expected 82.0 (0.02)
Passed bias filter:                      104  (0.0253535); expected 82.0 (0.02)
Passed Vit filter:                        19  (0.00463189); expected 4.1 (0.001)
Passed Fwd filter:                         9  (0.00219405); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.59u 0.16s 00:00:00.75 Elapsed: 00:00:00.51
# Mc/sec: 1666.69
//
Query:       MMETSP1137-20121227|8293_1  [L=277]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (277 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        57  (0.0138957); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.17s 00:00:00.41 Elapsed: 00:00:00.28
# Mc/sec: 1305.75
//
Query:       MMETSP1137-20121227|8294_1  [L=277]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.4e-07   28.1   0.0    2.6e-05   21.5   0.0    2.1  2  TIGR01983 UbiG: 3-demethylubiquinone-9 3-O-methyltransferase
    4.6e-05   20.8   0.2    7.6e-05   20.0   0.2    1.3  1  TIGR02021 BchM-ChlM: magnesium protoporphyrin O-methyltransferase
     0.0037   14.6   0.0     0.0064   13.9   0.0    1.3  1  TIGR02752 MenG_heptapren: 2-heptaprenyl-1,4-naphthoquinone methyltransferase
     0.0083   13.3   0.0      0.019   12.1   0.0    1.5  2  TIGR01934 MenG_MenH_UbiE: ubiquinone/menaquinone biosynthesis methyltransferase


Domain annotation for each model (and alignments):
>> TIGR01983  UbiG: 3-demethylubiquinone-9 3-O-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.5   0.0   2.5e-08   2.6e-05      47      97 ..      69     119 ..      54     135 .. 0.86
   2 !    4.5   0.0     0.004       4.1     114     153 ..     166     206 ..     146     211 .. 0.82

  Alignments for each domain:
  == domain 1    score: 21.5 bits;  conditional E-value: 2.5e-08
   TIGR01983  47 kleglkvlDvGcGgGllseslarlgaevtgiDlseelievAklhakkdplk 97 
                 + +g + lDvGc  G  + sla++ a v giD s   i++A++ +k+  + 
  MMETSP1137-20121227|8294_1  69 SYSGDSALDVGCAVGGATFSLAKHFACVDGIDFSLAFIDAARQLQKQGSMD 119
                 5668889************************************99998875 PP

  == domain 2    score: 4.5 bits;  conditional E-value: 0.004
   TIGR01983 114 kesfDvvlamEvlEHvadleeilkecaellkpg.gilflst 153
                 ++ +++vla+++l   + ++++l++cae    + g+l+l t
  MMETSP1137-20121227|8294_1 166 SSGYEAVLASNLLCRLPRPRAFLRSCAEWAVAErGVLLLVT 206
                 4669***********************97655548888876 PP

>> TIGR02021  BchM-ChlM: magnesium protoporphyrin O-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   0.2   7.4e-08   7.6e-05      52      98 ..      69     115 ..      54     127 .. 0.85

  Alignments for each domain:
  == domain 1    score: 20.0 bits;  conditional E-value: 7.4e-08
   TIGR02021  52 slkGkkvlDAGCGtGllsielAkrGaivkavDiseklvelarkraek 98 
                 s +G   lD GC  G  + +lAk+ a v ++D s ++++ ar+ +++
  MMETSP1137-20121227|8294_1  69 SYSGDSALDVGCAVGGATFSLAKHFACVDGIDFSLAFIDAARQLQKQ 115
                 679999***********************************986654 PP

>> TIGR02752  MenG_heptapren: 2-heptaprenyl-1,4-naphthoquinone methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.0   6.3e-06    0.0064      40     104 ..      66     127 ..      60     134 .. 0.88

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 6.3e-06
   TIGR02752  40 rmnvqkgkkaldvccgtadwaialaeavgkegevkgldfsenmlsvgkekvkdaklenvelvhgn 104
                 ++    g++aldv c  +  + +la+       v g+dfs  +++ +++  k+ +++  +lv g 
  MMETSP1137-20121227|8294_1  66 KVGSYSGDSALDVGCAVGGATFSLAKHF---ACVDGIDFSLAFIDAARQLQKQGSMDYKSLVEGT 127
                 5566789******************987...579*******************999999999886 PP

>> TIGR01934  MenG_MenH_UbiE: ubiquinone/menaquinone biosynthesis methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.1   0.0   1.8e-05     0.019      32      85 ..      64     116 ..      60     134 .. 0.83
   2 ?   -3.0   0.0      0.78     8e+02     190     213 ..     228     251 ..     212     254 .. 0.75

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 1.8e-05
   TIGR01934  32 vkkieeekeekvlDvatGtGdlaielakkaeakvtgvDlseemLevakkkakek 85 
                  kk+++ +++  lDv +  G  +++lak+  a v g+D+s + ++ a++  k+ 
  MMETSP1137-20121227|8294_1  64 SKKVGSYSGDSALDVGCAVGGATFSLAKHF-ACVDGIDFSLAFIDAARQLQKQG 116
                 5677888999******************99.789************99876544 PP

  == domain 2    score: -3.0 bits;  conditional E-value: 0.78
   TIGR01934 190 skeelaallkeagfeevryrsltf 213
                 s+e+l++ +++ gf+ ++ +++ f
  MMETSP1137-20121227|8294_1 228 SSEALSKEMNALGFQLLSREEVPF 251
                 678899999999999887776655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (277 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        85  (0.0207216); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.25u 0.12s 00:00:00.37 Elapsed: 00:00:00.37
# Mc/sec: 988.13
//
Query:       MMETSP1137-20121227|8295_1  [L=261]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (261 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       136  (0.0331546); expected 82.0 (0.02)
Passed bias filter:                      131  (0.0319356); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.15s 00:00:00.38 Elapsed: 00:00:00.38
# Mc/sec: 906.56
//
Query:       MMETSP1137-20121227|8296_1  [L=306]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      1e-12   46.6   0.0    3.3e-12   44.9   0.0    1.7  1  TIGR01444 fkbM_fam: methyltransferase, FkbM family
  ------ inclusion threshold ------
      0.013   12.8   0.0       0.02   12.3   0.0    1.2  1  TIGR02752 MenG_heptapren: 2-heptaprenyl-1,4-naphthoquinone methyltransferase


Domain annotation for each model (and alignments):
>> TIGR01444  fkbM_fam: methyltransferase, FkbM family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.9   0.0   1.6e-15   3.3e-12       8     139 ..     110     268 ..     107     271 .. 0.77

  Alignments for each domain:
  == domain 1    score: 44.9 bits;  conditional E-value: 1.6e-15
   TIGR01444   8 niGdvslvfaravae.grviafEPlpdllekleenvklnnlknvkllnaAvgdreg................eleftvsddatgnsslaads..................elaees............eieVevvtlddlveeaglekvdllKiDvEGaEleVLrglaetleekvpaiv 139
                 + Gd+   +++av+e g v+ fEP+ ++   +++ ++ n l n ++l+aA+ ++                  +            s+                       +    +            e +Ve++ ld+ +  a  ++ ++l iD EG E +VL+g+++ +++++p + 
  MMETSP1137-20121227|8296_1 110 FFGDWLPALSEAVGEsGFVVGFEPSLRNTGLARSTAQGNRLTNTRVLHAALCAERStrsvcvrdrggklxggQ------------ST----LtayaddiapaaaadaaarR----RlranatrpdcrqEEQVECRPLDSALPWAPAQRLGILLIDFEGQESSVLQGAEALIRKWRPIVA 268
                 5688888999999999************************************999855553333333222221............33....13333666666666555551....1444455677778889***********************************9999999998775 PP

>> TIGR02752  MenG_heptapren: 2-heptaprenyl-1,4-naphthoquinone methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   9.6e-06      0.02      47     103 ..     102     158 ..      88     163 .. 0.87

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 9.6e-06
   TIGR02752  47 kkaldvccgtadwaialaeavgkegevkgldfsenmlsvgkekvkdaklenvelvhg 103
                 ++a+      +dw  al+eavg++g v+g++ s     +++   + ++l+n +++h 
  MMETSP1137-20121227|8296_1 102 QTAVIAGLFFGDWLPALSEAVGESGFVVGFEPSLRNTGLARSTAQGNRLTNTRVLHA 158
                 55555555579**********************9999*************9999996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (306 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        89  (0.0216967); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.25u 0.14s 00:00:00.39 Elapsed: 00:00:00.34
# Mc/sec: 1187.90
//
Query:       MMETSP1137-20121227|8297_1  [L=331]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      2e-07   27.7   0.0    4.2e-07   26.6   0.0    1.4  2  TIGR01389 recQ: ATP-dependent DNA helicase RecQ
    7.7e-07   25.0   0.3      9e-07   24.8   0.2    1.0  1  TIGR04121 DEXH_lig_assoc: DEXH box helicase, DNA ligase-associated
    1.3e-06   25.3   0.0    8.7e-06   22.5   0.0    2.0  2  TIGR00643 recG: ATP-dependent DNA helicase RecG
    3.4e-05   20.6   0.0    4.7e-05   20.2   0.0    1.1  1  TIGR00614 recQ_fam: ATP-dependent DNA helicase, RecQ family
    0.00014   18.2   0.0      0.002   14.3   0.0    2.1  2  TIGR00580 mfd: transcription-repair coupling factor
  ------ inclusion threshold ------
      0.038   10.8   0.0      0.067   10.0   0.0    1.3  1  TIGR04095 dnd_restrict_1: DNA phosphorothioation system restriction enzyme


Domain annotation for each model (and alignments):
>> TIGR01389  recQ: ATP-dependent DNA helicase RecQ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0      0.42   2.9e+02      92     135 ..      46      89 ..       4      93 .. 0.56
   2 !   26.6   0.0   6.2e-10   4.2e-07     225     333 ..     196     306 ..     166     317 .. 0.84

  Alignments for each domain:
  == domain 1    score: -2.6 bits;  conditional E-value: 0.42
   TIGR01389  92 aqeilkalaagelklLYvaPerleqdkflellerlkiallavDe 135
                 +q  + + ++ + ++L  +P r++++    +++   + ++a+De
  MMETSP1137-20121227|8297_1  46 SQTQEGREEEDQSRILSTTPSRFLRAFRDGRVQTGLLRVVAFDE 89 
                 23333445566778888888888887777788888888888888 PP

  == domain 2    score: 26.6 bits;  conditional E-value: 6.2e-10
   TIGR01389 225 ksGiiYassRkkveelaeaLeskg..iealaYhaGlskkvRaeaqekFleddvkvvvatvaFGmGidksdvRfvihldlPknlesyyqeaGRaGRDGlkaeaillyseaDl 333
                  +  ++++s  + e+l + + s    +  +  ha + ++ R  a+++F   + +v+v t     G+d +  R+v+ +d   ++  +   aGR  R G +     l +  D 
  MMETSP1137-20121227|8297_1 196 GTCAVFCASEPDAEKLCALVASAApqLLPTVLHARMPDAARLAALDRFRLGESRVLVCTACAARGLDLPLLRHVVLYDPTPEVADFVHSAGRTARRGTHGLVTCLVQAGDA 306
                 455799**********9999887511455679*****************************************************************98776666666665 PP

>> TIGR04121  DEXH_lig_assoc: DEXH box helicase, DNA ligase-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.8   0.2   1.3e-09     9e-07     103     348 ..      46     293 ..       4     314 .. 0.85

  Alignments for each domain:
  == domain 1    score: 24.8 bits;  conditional E-value: 1.3e-09
   TIGR04121 103 ssserarqrkkppdiLltTpEslaLllsskdaeklfkdlravvvDElHeLl.gskRGdlleLaLarL.rrlapelrvvglsATvgnleeaaevllgeekeekaklvkakekkalevesllpeeeeklPw.aGhlglkaleevleeik....karttlvFtNtRsqaEllfqaLleaneelaleialhHgsldkeqRekveaalkagklravvcTssLdLGvDfgdvdlviqvGspkgvaRllQRiGRsnHrld 348
                 s+++  r ++++ +iL tTp    +l + +d +     lr+v  DE+ +Ll g+     + La + L ++l  + + v l  T ++l ea+e++l+ +   +a+lv+ + + + +   l+p+  +++ + +G    ++l +++++      ++ t+ vF+     aE l   + +a ++  l   + H+ + +++R    + ++ g+ r++vcT+    G+D   +  v+       va ++  +GR++ r  
  MMETSP1137-20121227|8297_1  46 SQTQEGREEEDQSRILSTTPSR--FLRAFRDGRVQTGLLRVVAFDEVDALLcGEAHSREMPLAATELlEALLSAGQPVQLLMTTAHLTEAHEHVLRGRF-PRAELVRHQGSDSGRRGVLVPTLRQRFHYfNGDKEQQLLRTLARAEAdphlREGTCAVFCASEPDAEKLCALVASAAPQ--LLPTVLHARMPDAARLAALDRFRLGESRVLVCTACAARGLDLPLLRHVVLYDPTPEVADFVHSAGRTARRGT 293
                 456667889999********86..68888899999999***********8736778889999988752678888999**************99998887.899*****999999************986489998888888876543222256899**************999999999..66677899**********************************************************987755 PP

>> TIGR00643  recG: ATP-dependent DNA helicase RecG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.1     0.072        49     286     309 ..       4      27 ..       2      51 .. 0.88
   2 !   22.5   0.0   1.3e-08   8.7e-06     468     536 ..     207     275 ..     203     318 .. 0.84

  Alignments for each domain:
  == domain 1    score: 0.2 bits;  conditional E-value: 0.072
   TIGR00643 286 qvalmaPTeiLAeQhyeklrelle 309
                 q++++ PT  LA+Qh + +++l +
  MMETSP1137-20121227|8297_1   4 QALVLSPTIELASQHSRVIAQLAQ 27 
                 8999***********998887755 PP

  == domain 2    score: 22.5 bits;  conditional E-value: 1.3e-08
   TIGR00643 468 aaealleelkkafpklnvallhgrlksdekeevleeFrekevdiLvaTtviEvGvdvPnatvmviedae 536
                 +ae+l+  + +a p+l   +lh+r++++ + ++l +Fr +e  +Lv+T     G+d+P +  +v++d+ 
  MMETSP1137-20121227|8297_1 207 DAEKLCALVASAAPQLLPTVLHARMPDAARLAALDRFRLGESRVLVCTACAARGLDLPLLRHVVLYDPT 275
                 5888999999999*********************************************99999998875 PP

>> TIGR00614  recQ_fam: ATP-dependent DNA helicase, RecQ family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   0.0   6.9e-08   4.7e-05     223     338 ..     192     309 ..     163     319 .. 0.84

  Alignments for each domain:
  == domain 1    score: 20.2 bits;  conditional E-value: 6.9e-08
   TIGR00614 223 efkgksGiiYClsrkkveqvaaeLqkk..glaaaaYhagleesarkevqkkflrdeiqvvvatvafGmGinkpdvRfvihyslpksiesYYqesGRaGRDglksecvlfyapaDvall 338
                 + +  +  ++C s  ++e++ a + +    l  +  ha + ++ar     +f   e +v+v t     G++ p +R+v+ y+ + ++  +   +GR  R g +   + + + +D a l
  MMETSP1137-20121227|8297_1 192 HLREGTCAVFCASEPDAEKLCALVASAapQLLPTVLHARMPDAARLAALDRFRLGESRVLVCTACAARGLDLPLLRHVVLYDPTPEVADFVHSAGRTARRGTHGLVTCLVQAGDAAAL 309
                 445556799***********998877622688899******************************************************************99988888888887765 PP

>> TIGR00580  mfd: transcription-repair coupling factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.1     0.022        15     499     520 ..       3      24 ..       1      37 [. 0.85
   2 !   14.3   0.0   2.9e-06     0.002     636     728 ..     170     265 ..     161     301 .. 0.84

  Alignments for each domain:
  == domain 1    score: 1.5 bits;  conditional E-value: 0.022
   TIGR00580 499 kQvavlvPTTlLaeQHfetlke 520
                  Q  vl+PT  La+QH + + +
  MMETSP1137-20121227|8297_1   3 PQALVLSPTIELASQHSRVIAQ 24 
                 699*************887765 PP

  == domain 2    score: 14.3 bits;  conditional E-value: 2.9e-06
   TIGR00580 636 ktfvkeyddelvkeairrE...llRgGqvfyvhnriesieklkeqlrelvPeariaiaHgqmeeeeleevmleFlkkefdvLvcTtiiEsGidipn 728
                 + f  +++++l+++  r E   +lR+G   +      + ekl + +++  P++  ++ H++m +      + +F  +e+ vLvcT+    G+d+p 
  MMETSP1137-20121227|8297_1 170 HYFNGDKEQQLLRTLARAEadpHLREGTCAVFCASEPDAEKLCALVASAAPQLLPTVLHARMPDAARLAALDRFRLGESRVLVCTACAARGLDLPL 265
                 55556667777777777663335688888888888888899999999999****************99*************************995 PP

>> TIGR04095  dnd_restrict_1: DNA phosphorothioation system restriction enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.0   9.8e-05     0.067     322     383 ..     230     291 ..     215     296 .. 0.91

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 9.8e-05
   TIGR04095 322 eeskeeReellkqfesgelqalvairCLDeGvDvPairtayiLasssnPrqFiqRRGRvLRk 383
                 + + + R   l +f  ge  +lv   C   G+D+P +r+ ++   +    +F+   GR  R+
  MMETSP1137-20121227|8297_1 230 RMPDAARLAALDRFRLGESRVLVCTACAARGLDLPLLRHVVLYDPTPEVADFVHSAGRTARR 291
                 556778888999**********************************************9886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (331 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       109  (0.0265724); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.33u 0.16s 00:00:00.49 Elapsed: 00:00:00.39
# Mc/sec: 1120.22
//
Query:       MMETSP1137-20121227|8298_1  [L=258]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (258 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       115  (0.0280351); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.14s 00:00:00.36 Elapsed: 00:00:00.35
# Mc/sec: 972.95
//
Query:       MMETSP1137-20121227|8299_1  [L=211]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (211 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       102  (0.0248659); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.17s 00:00:00.35 Elapsed: 00:00:00.40
# Mc/sec: 696.24
//
Query:       MMETSP1137-20121227|8300_1  [L=516]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (516 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       142  (0.0346173); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.17s 00:00:00.53 Elapsed: 00:00:00.51
# Mc/sec: 1335.42
//
Query:       MMETSP1137-20121227|8301_1  [L=263]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.1e-95  316.5   0.0    8.3e-95  316.2   0.0    1.0  1  TIGR00838 argH: argininosuccinate lyase
    2.4e-09   34.4   0.0    3.3e-09   34.0   0.0    1.2  1  TIGR02426 protocat_pcaB: 3-carboxy-cis,cis-muconate cycloisomerase
    7.6e-08   29.3   0.0    9.5e-08   29.0   0.0    1.0  1  TIGR00928 purB: adenylosuccinate lyase
    0.00052   16.9   0.0    0.00068   16.5   0.0    1.1  1  TIGR00839 aspA: aspartate ammonia-lyase
    0.00058   16.6   0.0     0.0009   15.9   0.0    1.4  1  TIGR00979 fumC_II: fumarate hydratase, class II


Domain annotation for each model (and alignments):
>> TIGR00838  argH: argininosuccinate lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  316.2   0.0     1e-97   8.3e-95     205     451 ..       2     247 ..       1     250 [. 0.98

  Alignments for each domain:
  == domain 1    score: 316.2 bits;  conditional E-value: 1e-97
   TIGR00838 205 idrellaelLgFdavvensldavsdRDfiiEllsaaallmvhlsrlaEelilfsseEfgfvelsdevssgssimPqKKnpDvaEliRgktgrviGnltglltilKalPlaYnkDlqEdkealfdalktveellevvtgllkelkvnkerleeaakknfalatdlAdylvrkGvPFReaheivGevvakaiekGkkleeltleelqklsekleedvlevldleeavekrdakGGtakeevekaieeak 451
                 +dr +la++LgF+  + nsld+vsdRDf++El s+a+llmvhlsr+aE+li++ss+Efgfv   d++s+gss+mPq KnpD+aEl+Rgk++rviG+ ++llt+lK+lP+aYnkDlqEdk+alfd+l+tv  +l+++ g+l++l+ +  r ++ a ++f+latdl +ylvrkGvPFRe+h+i+G++v+ a+ k   l+ l+++el+ l++ +e+dvl+v d+  +ve++d+ GGt+k++v ++ ++++
  MMETSP1137-20121227|8301_1   2 LDRVALAADLGFNGPTPNSLDSVSDRDFVVELSSWASLLMVHLSRFAEDLIIYSSQEFGFVRCGDSYSTGSSLMPQXKNPDAAELLRGKSARVIGHHVTLLTMLKGLPTAYNKDLQEDKQALFDTLETVDAALKIASGVLSTLTPQPTR-MREALNSFMLATDLSEYLVRKGVPFRETHHISGRAVQLAEGKNCALTALSVDELKSLHPLFEDDVLKVWDFDASVERKDSVGGTSKRRVLEQAKKLQ 247
                 8***************************************************************************************************************************************************9.677899********************************999999*********************************************99988765 PP

>> TIGR02426  protocat_pcaB: 3-carboxy-cis,cis-muconate cycloisomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.0   0.0     4e-12   3.3e-09     205     329 ..       6     135 ..       4     144 .. 0.78

  Alignments for each domain:
  == domain 1    score: 34.0 bits;  conditional E-value: 4e-12
   TIGR02426 205 alAaelgLeapa...lpWhtqrdriaelaaaLalvagalgkiaqDvallaqtevgevleagg..GGSSampHKrNPvaaevlaaaarrapglvatLfaalaqedeRsaggWhaeWetLrelvaltagalr 329
                 alAa lg + p+   l   ++rd+++el++  +l+   l ++a+D+++ +  e g v+ + +   GSS mp  +NP aae+l++ ++r+ g   tL+  l+      +   + + ++L + ++ + +al+
  MMETSP1137-20121227|8301_1   6 ALAADLGFNGPTpnsLDSVSDRDFVVELSSWASLLMVHLSRFAEDLIIYSSQEFGFVRCGDSysTGSSLMPQXKNPDAAELLRGKSARVIGHHVTLLTMLKGLPTAYNKDLQEDKQALFDTLETVDAALK 135
                 677777777664111345799**********************************999854456***************************999999877655555555555555555555555555555 PP

>> TIGR00928  purB: adenylosuccinate lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.0   0.0   1.2e-10   9.5e-08     207     398 ..      10     198 ..       4     228 .. 0.81

  Alignments for each domain:
  == domain 1    score: 29.0 bits;  conditional E-value: 1.2e-10
   TIGR00928 207 lLGlk.talist.QiiqrdrhaellaalallaatleklavdirllqrtevleveekfekgqvGSSaMPhKrNpidsErveGl.arvirsvls..aalekvvlwheRdltdSsveRviLpdsliladiilksllkvvkkLvvypenikrnLelelgllasekvlielvekglgreeayeivkelamkaaeveeedlke 398
                  LG++ + ++s   +  rd  +el +  +ll   l+++a d+  + + e   v+   +   +GSS MP  +Np  +E + G  arvi  +++  ++l+ ++   ++dl++    + +L d l ++d +lk  + v++ L+  p ++++ L+    +++++ +   lv+kg+   e ++ ++  a++ ae+++ +l  
  MMETSP1137-20121227|8301_1  10 DLGFNgPTPNSLdSVSDRDFVVELSSWASLLMVHLSRFAEDLIIYSSQEFGFVRCGDS-YSTGSSLMPQXKNPDAAELLRGKsARVIGHHVTllTMLKGLPTAYNKDLQED---KQALFDTLETVDAALKIASGVLSTLTPQPTRMREALNS---FMLATDLSEYLVRKGVPFRETHH-ISGRAVQLAEGKNCALTA 198
                 47776345556568999*****************************999998887766.88********************73678877665224566679*******985...67899*****************************9984...66666677799999999999996.677888888866665554 PP

>> TIGR00839  aspA: aspartate ammonia-lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0   8.3e-07   0.00068     260     344 ..      19     101 ..      12     135 .. 0.88

  Alignments for each domain:
  == domain 1    score: 16.5 bits;  conditional E-value: 8.3e-07
   TIGR00839 260 nlieatsdtgayvevsgalkriavklskvcndlrllssGpraGlneinlpelqaGssimpakvnpvvpevvnqvcfkviGndttv 344
                 n +++ sd +  ve+s+    ++v+ls+ ++dl + ss    G+         +Gss+mp   np  +e++   + +viG   t+
  MMETSP1137-20121227|8301_1  19 NSLDSVSDRDFVVELSSWASLLMVHLSRFAEDLIIYSSQE-FGFVRCG-DSYSTGSSLMPQXKNPDAAELLRGKSARVIGHHVTL 101
                 567889999999*********************9988865.5666554.57889**************************98876 PP

>> TIGR00979  fumC_II: fumarate hydratase, class II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   1.1e-06    0.0009     257     344 ..      16     101 ..       2     167 .. 0.86

  Alignments for each domain:
  == domain 1    score: 15.9 bits;  conditional E-value: 1.1e-06
   TIGR00979 257 tapnkfealaahdalveahGalkalaasllkiandirflasGPrcGlgelll.PenePGssimPGkvnPtqsealtmvcaqvlGndati 344
                 ++pn +++++  d +ve +     l ++l + a+d+   +s    G+  +        Gss+mP   nP  +e l+  +a+v+G ++t+
  MMETSP1137-20121227|8301_1  16 PTPNSLDSVSDRDFVVELSSWASLLMVHLSRFAEDLIIYSSQE-FGF--VRCgDSYSTGSSLMPQXKNPDAAELLRGKSARVIGHHVTL 101
                 689*********************************9887753.333..333045689****************************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (263 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        90  (0.0219405); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.25u 0.16s 00:00:00.41 Elapsed: 00:00:00.42
# Mc/sec: 826.50
//
Query:       MMETSP1137-20121227|8302_1  [L=292]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (292 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       335  (0.0816675); expected 82.0 (0.02)
Passed bias filter:                      112  (0.0273038); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.17s 00:00:00.49 Elapsed: 00:00:00.71
# Mc/sec: 542.83
//
Query:       MMETSP1137-20121227|8303_1  [L=453]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (453 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       118  (0.0287665); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.16s 00:00:00.47 Elapsed: 00:00:00.38
# Mc/sec: 1573.45
//
Query:       MMETSP1137-20121227|8304_1  [L=405]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0044   13.0   0.0     0.0066   12.4   0.0    1.1  1  TIGR04075 bacter_Pnkp: polynucleotide kinase-phosphatase


Domain annotation for each model (and alignments):
>> TIGR04075  bacter_Pnkp: polynucleotide kinase-phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.4   0.0   1.6e-06    0.0066     185     262 ..      61     137 ..      55     141 .. 0.70

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 1.6e-06
   TIGR04075 185 iGdvhGCldeleelleklGyeveeeeegkavevthpegrkavflGdlvdrGpdspdvlrlvmsmv.....kagaalcvpGnhe 262
                 iGd+hG   +l++l++ l ++   +++    +        +v  Gd+ drG+d p++l l +++      + g+ +++ Gnhe
  MMETSP1137-20121227|8304_1  61 IGDIHG---DLNALINCLEFSDLYSKA---KDCWTGGDAVLVQTGDVLDRGTDEPAILELLQKLKlqaaeAGGKVITLLGNHE 137
                 99***9...567777777775443333...44444555566778**************999876322111346889999**98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (405 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       124  (0.0302292); expected 82.0 (0.02)
Passed bias filter:                       98  (0.0238908); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.31u 0.14s 00:00:00.45 Elapsed: 00:00:00.45
# Mc/sec: 1187.90
//
Query:       MMETSP1137-20121227|8305_1  [L=161]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.5e-05   20.3   0.0    0.00011   19.5   0.0    1.3  1  TIGR02349 DnaJ_bact: chaperone protein DnaJ
     0.0011   15.3   0.0     0.0013   15.0   0.0    1.1  1  TIGR03835 termin_org_DnaJ: terminal organelle assembly protein TopJ


Domain annotation for each model (and alignments):
>> TIGR02349  DnaJ_bact: chaperone protein DnaJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.0   5.3e-08   0.00011       4      51 ..     104     147 ..     103     154 .. 0.84

  Alignments for each domain:
  == domain 1    score: 19.5 bits;  conditional E-value: 5.3e-08
   TIGR02349   4 eiLgvskdAseeeikkAYrklakkyHPDrnkgekeaeekfkeineAye 51 
                 +iLg+  ++++++ik A+rk+    HPDr   ++    k  e n   e
  MMETSP1137-20121227|8305_1 104 QILGIRESSNKAQIKDAHRKIMLLNHPDRGG-SPYIASKINEAN---E 147
                 79***************************98.777777655544...4 PP

>> TIGR03835  termin_org_DnaJ: terminal organelle assembly protein TopJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   6.5e-07    0.0013       2      54 ..     100     149 ..      99     154 .. 0.87

  Alignments for each domain:
  == domain 1    score: 15.0 bits;  conditional E-value: 6.5e-07
   TIGR03835   2 rDyyevLgidrDadeqeikkafrkLakkyhPDrnkaadaakifaeineandvL 54 
                 r+   +Lgi   +++ +ik a rk+    hPDr   +    i   inean+ L
  MMETSP1137-20121227|8305_1 100 REAAQILGIRESSNKAQIKDAHRKIMLLNHPDRGGSPY---IASKINEANECL 149
                 556679***************************99886...566899999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (161 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       191  (0.0465627); expected 82.0 (0.02)
Passed bias filter:                      145  (0.0353486); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.18u 0.12s 00:00:00.30 Elapsed: 00:00:00.45
# Mc/sec: 472.23
//
Query:       MMETSP1137-20121227|8307_1  [L=557]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (557 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        97  (0.023647); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.18s 00:00:00.55 Elapsed: 00:00:00.49
# Mc/sec: 1500.37
//
Query:       MMETSP1137-20121227|8309_1  [L=366]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (366 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        87  (0.0212092); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.15s 00:00:00.43 Elapsed: 00:00:00.42
# Mc/sec: 1150.19
//
Query:       MMETSP1137-20121227|8310_1  [L=442]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (442 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        57  (0.0138957); expected 82.0 (0.02)
Passed bias filter:                       41  (0.00999512); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.16s 00:00:00.47 Elapsed: 00:00:00.50
# Mc/sec: 1166.78
//
Query:       MMETSP1137-20121227|8311_1  [L=574]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   3.4e-135  449.0   0.0   4.1e-135  448.8   0.0    1.0  1  TIGR03385 CoA_CoA_reduc: CoA-disulfide reductase
    1.2e-52  177.2   0.0    1.5e-52  176.8   0.0    1.0  1  TIGR02374 nitri_red_nirB: nitrite reductase [NAD(P)H], large subunit
    7.2e-38  128.6   0.9    4.3e-37  126.0   0.0    2.0  2  TIGR02053 MerA: mercuric reductase
    4.1e-37  125.8   0.0    3.6e-36  122.7   0.0    2.0  2  TIGR01350 lipoamide_DH: dihydrolipoyl dehydrogenase
    3.4e-25   86.3   0.0    8.3e-25   85.1   0.0    1.6  1  TIGR01424 gluta_reduc_2: glutathione-disulfide reductase
    1.8e-19   67.8   0.0      1e-18   65.3   0.0    2.1  2  TIGR03452 mycothione_red: mycothione reductase
    1.4e-18   65.1   0.0    3.3e-18   63.8   0.0    1.5  2  TIGR03169 Nterm_to_SelD: pyridine nucleotide-disulfide oxidoreductase family protein
    1.7e-16   58.3   0.3    2.9e-16   57.5   0.0    1.6  1  TIGR01421 gluta_reduc_1: glutathione-disulfide reductase
    5.6e-15   52.6   0.0      1e-14   51.7   0.0    1.4  2  TIGR01423 trypano_reduc: trypanothione-disulfide reductase
    3.4e-13   47.1   0.0    4.7e-12   43.3   0.0    2.3  2  TIGR01438 TGR: thioredoxin and glutathione reductase
    4.2e-13   46.7   1.8    1.2e-09   35.3   0.1    2.9  3  TIGR01316 gltA: glutamate synthase (NADPH), homotetrameric
    1.8e-10   38.0   0.1      1e-09   35.5   0.1    2.0  1  TIGR01292 TRX_reduct: thioredoxin-disulfide reductase
      4e-09   33.4   0.5    7.4e-09   32.5   0.3    1.5  1  TIGR03140 AhpF: alkyl hydroperoxide reductase, F subunit
    7.5e-07   26.1   0.0    2.7e-06   24.2   0.0    1.9  2  TIGR04018 Bthiol_YpdA: putative bacillithiol system oxidoreductase, YpdA family
    1.7e-06   23.6   3.2    1.5e-05   20.4   0.0    2.4  3  TIGR03315 Se_ygfK: putative selenate reductase, YgfK subunit
     0.0016   15.2   3.4      0.036   10.7   0.0    2.9  4  TIGR01317 GOGAT_sm_gam: glutamate synthase, NADH/NADPH, small subunit
      0.002   15.1   0.2     0.0033   14.4   0.2    1.3  1  TIGR02352 thiamin_ThiO: glycine oxidase ThiO
     0.0032   13.7   5.4       0.16    8.1   0.1    3.2  3  TIGR03997 mycofact_OYE_2: mycofactocin system FadH/OYE family oxidoreductase 2
     0.0034   14.3   1.8     0.0073   13.2   0.1    2.2  2  TIGR03364 HpnW_proposed: FAD dependent oxidoreductase TIGR03364
     0.0038   14.2   0.2      0.007   13.3   0.1    1.4  1  TIGR03197 MnmC_Cterm: tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain
     0.0038   14.4   4.2     0.0066   13.6   0.2    2.6  3  TIGR03467 HpnE: squalene-associated FAD-dependent desaturase
      0.005   13.3   3.2      0.055    9.9   0.0    2.4  3  TIGR01318 gltD_gamma_fam: glutamate synthase, small subunit
     0.0062   13.2   0.3        1.6    5.3   0.1    2.7  3  TIGR00275 TIGR00275: flavoprotein, HI0933 family
       0.01   12.6   0.3      0.035   10.7   0.0    1.8  2  TIGR01988 Ubi-OHases: ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family
  ------ inclusion threshold ------
      0.018   12.0   0.1      0.036   11.0   0.1    1.5  1  TIGR01790 carotene-cycl: lycopene cyclase family protein
      0.022   12.3   3.4       0.81    7.1   0.1    3.0  3  TIGR02032 GG-red-SF: geranylgeranyl reductase family
      0.026   12.7   0.0      0.061   11.5   0.0    1.6  1  TIGR02981 phageshock_pspE: phage shock operon rhodanese PspE
       0.03   10.9   0.0       0.05   10.2   0.0    1.3  1  TIGR00137 gid_trmFO: tRNA:m(5)U-54 methyltransferase
      0.039   10.4   2.7      0.026   11.0   0.2    1.8  2  TIGR02734 crtI_fam: phytoene desaturase
      0.041   10.3   0.7       0.12    8.7   0.0    1.9  3  TIGR03143 AhpF_homolog: putative alkyl hydroperoxide reductase F subunit


Domain annotation for each model (and alignments):
>> TIGR03385  CoA_CoA_reduc: CoA-disulfide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  448.8   0.0    3e-137  4.1e-135       1     439 []      13     458 ..      13     458 .. 0.97

  Alignments for each domain:
  == domain 1    score: 448.8 bits;  conditional E-value: 3e-137
   TIGR03385   1 kivivGgvaaGasaAsrvrRLkkesdiivfekteivsfanCglPYfvggviedrkkllaytpekfiekkkidvktksevikvdkeektvvvknnktnekyeesyDkLilstGAkpkileiegieldavftlrnledaeaikkyldkkkvekvvviGgGyiglemvealkergkevtliersekilnkllDeeiakiveeelekkeielrlneevksvegeekve....vltsgk.vyqaDlvilavGvkPnselikssqlklgkkGaikvnekfqtsveniyaiGDvaesknivtkkeelvPlAwaanklgsivaeniaGkdiefkGvlGtsivkfldltiaktGltenelkklnidyktvevkakakanYYPgakdlllklive...kdtkkilgaqavGkegvlkRidvlaaaikakltvkdltelelaYaPPysrvkDlvnlig 439
                 +iv+vG+va+GasaA+r+rRL+++  i++fek+ + sfanCglPY++gg i+dr kl ++tp ++  + ++dv++ +evi +d++ ktv+ +   t+++  + yD Lils+G kp i++i+gi+ +  f lrnled + i+++l  k+++++vv GgG+ig+em+e l++rg++vtl+e   ++    lD e+a +++ee+e+++i +++   +k+ e++  +     vl +g  ++ aD+v+l++Gv+ ++ l+ks++++l+ +G i+v+ +++tsv+ni+a+GD++e+kn ++  + +v lA +an++g++va+ni Gk  efkG+ Gts+v++++lt+a tGl+e+ l+  n++y+ v++  +++a+YYPga+++ lkl++e   ++  ++lgaqavG++g++kRidv+a+a++a+l v+dl++lel YaPP+ ++kD+vn +g
  MMETSP1137-20121227|8311_1  13 RIVVVGAVAGGASAAARARRLDEHATITLFEKGPDPSFANCGLPYYIGGEITDRAKLSVQTPASLHARLNLDVRVLTEVISIDSQAKTVTTRHLPTGTEETHPYDDLILSPGSKPFIPPIPGIKRPGAFALRNLEDMDVIHSWLSGKDAKTAVVAGGGFIGIEMAEQLHRRGLKVTLVEALPQL-LAPLDPEMAMMIQEEMESHGIRVVTGKPIKAFEDNASALcgdvVLGDGVpNIPADMVLLGLGVRADTALAKSAGIELNARGGIVVDSQLRTSVPNIWAVGDAIEVKNPIVGGQWMVALAGPANRQGRMVADNIFGKXREFKGTFGTSVVRVFNLTAAGTGLNERGLQMANLKYQAVHLFPNSHAGYYPGASQIALKLLFEvggENEGRVLGAQAVGNDGADKRIDVIATAMQAGLKVDDLAQLELCYAPPVGSAKDPVNYAG 458
                 79*******************************************************************************************9998888888********************************************************************************9.688*******************************99874344366666436789*************************************************************************************************************************************************96667899***************************************************9875 PP

>> TIGR02374  nitri_red_nirB: nitrite reductase [NAD(P)H], large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  176.8   0.0   1.1e-54   1.5e-52       2     325 ..      15     352 ..      14     371 .. 0.87

  Alignments for each domain:
  == domain 1    score: 176.8 bits;  conditional E-value: 1.1e-54
   TIGR02374   2 vlvGnGmvGvrlieevlkkddkdefeitvfgeepdaaydrvlLssvlq..eadledltLnsk.dyyekhgikllvnervikidreeksvitd.....agrtlsyDkLilatGsypfilPipGaDkkgvfvyrtieDldalea..aakrtkkaaviGgGLLGLeaaraLknlGldvsvielapllmakqlDqtagrlLqrelekkGltvlleketveivkesvekaerlrfkDGs.sleadlvvlaaGirPrdeLaaeaGlkvndrrGiivndsmqtsdPdiyavGecaehngrvyG......LvaPlyeqakvladhllgveeeyegadlsakLkllGvdv 325
                 v+vG    G  +    + +d  ++  it+f + pd+++   +L  ++    +d+++l++++        ++ + v + vi id + k+v t      ++ t++yD+Lil+ Gs pfi+PipG  ++g f+ r++eD+d +++    k  k a+v GgG++G+e a+ L++ Gl+v  +e  p+l+a  lD   + ++q+e+e++G++v ++k      ++ +     + + DG  ++ ad+v+l  G+r  + La++aG+++n r+Gi+v+  ++ts P+i+avG+  e+++ + G      L +P  +q++++ad++ g  +e++g+  ++ +++  +  
  MMETSP1137-20121227|8311_1  15 VVVGAVAGGASAAARARRLD--EHATITLFEKGPDPSFANCGLPYYIGgeITDRAKLSVQTPaSLHARLNLDVRVLTEVISIDSQAKTVTTRhlptgTEETHPYDDLILSPGSKPFIPPIPGIKRPGAFALRNLEDMDVIHSwlSGKDAKTAVVAGGGFIGIEMAEQLHRRGLKVTLVEALPQLLA-PLDPEMAMMIQEEMESHGIRVVTGKPIKAFEDNASALCGDVVLGDGVpNIPADMVLLGLGVRADTALAKSAGIELNARGGIVVDSQLRTSVPNIWAVGDAIEVKNPIVGgqwmvaLAGPANRQGRMVADNIFGKXREFKGTFGTSVVRVFNLTA 352
                 66666555555555444444..7889*********************87467899999987515667779999999*************97522222799****************************************994457899999********************************98.59**********************9988887777888999******648******************************************************998876677555889*********************997777666665555 PP

>> TIGR02053  MerA: mercuric reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.1      0.32        43       2      33 ..      13      46 ..      11      47 .. 0.85
   2 !  126.0   0.0   3.1e-39   4.3e-37     106     439 ..      93     443 ..      76     452 .. 0.83

  Alignments for each domain:
  == domain 1    score: 0.7 bits;  conditional E-value: 0.32
   TIGR02053  2 dlviiGsGaaafaaaikaaelg..akvvlverGi 33
                ++v++G  a++ +aa +a++l   a ++l e+G+
  MMETSP1137-20121227|8311_1 13 RIVVVGAVAGGASAAARARRLDehATITLFEKGP 46
                689****999999999999887668889999886 PP

  == domain 2    score: 126.0 bits;  conditional E-value: 3.1e-39
   TIGR02053 106 llegkakfkdektvkvdlgkevvgakrvliAtGarpavPeipGLkeae........yltseelleldkipeslvviGggaiavElaqlfarlGsevtllqrserllkeeepeisaaveellaeeGvevvksakvkavskrnggkklvtvekndskkeveadellvAtGRkpnvdgLnLekvgvklderGeilvdeklrtsnpkiyAAGDvikglq..........lesvAakeGvvaAenalggaeakldlevlPkvv.FtdPevAsvGlteeelakagievesrtvkleavpralinretrGliKlvae...ketkkvlgvqvvaee.Aaevineaalaikagltvddlidtlhvf 439
                  + ++ak +  +++     +e+  ++ +++  G++p +P+ipG+k  +         ++  + + + k  +  vv Ggg i++E+a  ++r G++vtl++   +ll   +pe++ +++e +++ G++vv+   +ka +  n  +   +v   d+  ++ ad +l+  G ++ ++ L  + +g++l+ rG+i+vd++lrts p+i+A GD i+  +          l   A ++G ++A+n++g+  +++  +   +vv   +   A  Gl e+ l+ a +++++  +   +  +++  +  +  +Kl  e   ++ ++vlg+q+v+++ A+  i + a a++agl vddl++    +
  MMETSP1137-20121227|8311_1  93 SIDSQAKTVTTRHLPTG-TEETHPYDDLILSPGSKPFIPPIPGIKRPGafalrnleDMDVIHSWLSGKDAKTAVVAGGGFIGIEMAEQLHRRGLKVTLVEALPQLLAPLDPEMAMMIQEEMESHGIRVVTGKPIKAFED-NASALCGDVVLGDGVPNIPADMVLLGLGVRADTA-L-AKSAGIELNARGGIVVDSQLRTSVPNIWAVGDAIEVKNpivggqwmvaLAGPANRQGRMVADNIFGK-XREFKGTFGTSVVrVFNLTAAGTGLNERGLQMANLKYQAVHLF-PNSHAGYYPGASQIALKLLFEvggENEGRVLGAQAVGNDgADKRIDVIATAMQAGLKVDDLAQLELCY 443
                 56788888888888888.566667777*****************99885544433334444455667777999*****************************************************************9.68888899999999***************99999.4.4789****************************99876667888885555566789***********5.7888877666665244677899***********8777765554.4556678889999999997763336789********98626668*****************9876555 PP

>> TIGR01350  lipoamide_DH: dihydrolipoyl dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.1      0.27        37       3      26 ..      13      36 ..      11      44 .. 0.83
   2 !  122.7   0.0   2.6e-38   3.6e-36     122     435 ..     109     438 ..      84     449 .. 0.78

  Alignments for each domain:
  == domain 1    score: 0.7 bits;  conditional E-value: 0.27
   TIGR01350  3 dvvviGgGpgGYvaAiraaqlglk 26
                 +vv+G+  gG  aA ra +l  +
  MMETSP1137-20121227|8311_1 13 RIVVVGAVAGGASAAARARRLDEH 36
                68***************9887665 PP

  == domain 2    score: 122.7 bits;  conditional E-value: 2.6e-38
   TIGR01350 122 kkekkekkleakniiiAtGseprelplk.leedekvvitseealel......kevpeslvivGgGviGvEfasifaklGvkvtvielldrilpaldaevskvlkkklkkkgvkiltnakvtevekeedevv..veakkkevetleaekvLvavGrkpnleelgleklgveldergaikvdeelrtnvpgiyaiGDvig........klm..LAhvAskegvvaaekiagkekseidykavPsviyt.ePevasvGlteeqakeegievkvgkfpfaangkalal.eetdGfvkvivd...kktgeilGahivgaease.liselalaveleltveelak 435
                  +   e++  ++++i+  Gs+p  +p++ +++ + + + + e + +       +  ++ v+ GgG iG+E+a  +++ G kvt++e+l+++l+ ld e++ +++++++ +g++++t+  +++ e+++ ++   v   +  v ++ a+ vL+  G+++++     ++ g+el+ rg i+vd++lrt+vp+i+a+GD+i+        ++m  LA  A ++g ++a++i+gk + e++ +   sv+   +   a  Gl+e+ ++ ++ +++++  ++  n++a  + + ++  +k++++   ++ g++lGa+ vg++ ++  i  +a a++++l+v++la+
  MMETSP1137-20121227|8311_1 109 GT---EETHPYDDLILSPGSKPFIPPIPgIKRPGAFALRNLEDMDVihswlsGKDAKTAVVAGGGFIGIEMAEQLHRRGLKVTLVEALPQLLAPLDPEMAMMIQEEMESHGIRVVTGKPIKAFEDNASALCgdVVLGD-GVPNIPADMVLLGLGVRADTA--LAKSAGIELNARGGIVVDSQLRTSVPNIWAVGDAIEvknpivggQWMvaLAGPANRQGRMVADNIFGKXR-EFKGTFGTSVVRVfNLTAAGTGLNERGLQMANLKYQAV--HLFPNSHAGYYpGASQIALKLLFEvggENEGRVLGAQAVGNDGADkRIDVIATAMQAGLKVDDLAQ 438
                 22...2577899*************9999555444333333322221111114557889999*******************************************************************996544444.69******************9..7799*****************************87533333322444338999**************988.677766666664315678999*******9997766655..556666666551556777899887555799***********9887369***************987 PP

>> TIGR01424  gluta_reduc_2: glutathione-disulfide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.1   0.0   6.1e-27   8.3e-25     132     427 ..     117     435 ..      82     440 .. 0.71

  Alignments for each domain:
  == domain 1    score: 85.1 bits;  conditional E-value: 6.1e-27
   TIGR01424 132 ekiliavGgrpvkpelPGae....laitsdeafdl......etlPksilvvGgGyiavefagifrGlGvkvtllyrgekilrgfdddvraelaeeleerGirillktvlksiekvddGlk..vtlskd.eeivadvvllatGrvPnvkglgleaaGvelndagaiavdeysrtsvpsiyavGdvtd..........rinltPvaikeaaafaetefknnptkadhdlvatavfsqPevatvGlseeearekftddievy.raefrPmkatlsGrqekillklvvd...ekddkvlGahvvGedaae.iiqlvaialkaGatkkd 427
                 + ++++ G++p  p +PG      +a+   e +d+       +  k+++v+GgG+i++e+a+ ++  G kvtl+    ++l  +d ++ + ++ee+e +Gir+++ + +k+ e ++  l   v+l ++  +i ad+vll +G   ++      +aG+eln +g i+vd   rtsvp+i+avGd+ +           + l+  a ++++  a+  f+ + ++++  +  t+v    ++++ G   +e   +++ +++      f   +a ++    +i lkl+ +   e++ +vlGa+ vG+d a+  i ++a a++aG   +d
  MMETSP1137-20121227|8311_1 117 DDLILSPGSKPFIPPIPGIKrpgaFALRNLEDMDVihswlsGKDAKTAVVAGGGFIGIEMAEQLHRRGLKVTLVEALPQLLAPLDPEMAMMIQEEMESHGIRVVTGKPIKAFEDNASALCgdVVLGDGvPNIPADMVLLGLGVRADTA--LAKSAGIELNARGGIVVDSQLRTSVPNIWAVGDAIEvknpivggqwMVALAGPANRQGRMVADNIFG-KXREFK-GTFGTSVVRVFNLTAAGTGLNERGLQMA-NLKYQaVHLFPNSHAGYYPGASQIALKLLFEvggENEGRVLGAQAVGNDGADkRIDVIATAMQAGLKVDD 435
                 555666666666666666542222444444444331111112346899******************************************************************9998541144444415799*********887765..3578*****************************9873223222222356777788999999999996.455554.3444444444444444444444444442.23333033455566778888999999997653337889***********876279*********987665 PP

>> TIGR03452  mycothione_red: mycothione reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.3   0.0   7.5e-21     1e-18     111     433 ..      95     439 ..      86     448 .. 0.77
   2 ?   -2.0   0.0       1.9   2.6e+02     163     181 ..     517     535 ..     511     541 .. 0.88

  Alignments for each domain:
  == domain 1    score: 65.3 bits;  conditional E-value: 7.5e-21
   TIGR03452 111 esharfvgrktlrtedgeeitadqvviaaGsrpvipea..iaesgvryytn.edimrlp.....elpeslvivGgGyialefahvfsalGtkvtlvarsekllrkldediserfte.lakkkfdvrlgrnvtaaeqdddgv..tlelddGs.tveadvllvatGrvpngdlldaeaaGvevdedgrvkvdeyqrtsaegvfalGd...vssp.....y..qlkhvanaearvvkhnllkdedlkkadhdfvpaavftdpqiatvGlteqeareaGlditvkvqdygdvayGwamedteglakl...iadkdtGkllGahiiGaq.assliqqlitalafgldarelark 433
                 +s+a+ v+++ l t++ e+   d+++++ Gs+p+ip++  i+  g+    n ed+  +      +  ++ v+ GgG+i +e+a+ ++  G kvtlv    +ll+ ld +++  ++e + ++ + v +g+ + a e++++ +   + l dG  ++ ad++l+  G    +d+  a++aG+e++  g + vd   rts+ +++a+Gd   v +p     +   l   an + r+v++n+  +    k    +    vf     a  Gl e+  + a l+ +  v  + +   G+    ++   kl   ++ ++ G++lGa  +G++ a   i  + ta+  gl++ +la+ 
  MMETSP1137-20121227|8311_1  95 DSQAKTVTTRHLPTGTEETHPYDDLILSPGSKPFIPPIpgIKRPGAFALRNlEDMDVIHswlsgKDAKTAVVAGGGFIGIEMAEQLHRRGLKVTLVEALPQLLAPLDPEMAMMIQEeMESHGIRVVTGKPIKAFEDNASALcgDVVLGDGVpNIPADMVLLGLGV--RADTALAKSAGIELNARGGIVVDSQLRTSVPNIWAVGDaieVKNPivggqWmvALAGPANRQGRMVADNIFGKXREFKGTFGTSVVRVFN-LTAAGTGLNERGLQMANLKYQ-AVHLFPNSHAGYYPGASQIALKLlfeVGGENEGRVLGAQAVGNDgADKRIDVIATAMQAGLKVDDLAQL 439
                 67899999****************************8655888876544441444333311112457899****************************************9998752667789999*********99999623578888864899*****99996..56778899*****************************9444334422222322477789***********98855555555555556774.456778999998888777654.35556666666666666666666111456889**********9747789****************9975 PP

  == domain 2    score: -2.0 bits;  conditional E-value: 1.9
   TIGR03452 163 mrlpelpeslvivGgGyia 181
                  r++elp++ +iv + ++ 
  MMETSP1137-20121227|8311_1 517 SRINELPKDKIIVTSCFVG 535
                 59************99985 PP

>> TIGR03169  Nterm_to_SelD: pyridine nucleotide-disulfide oxidoreductase family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0       3.3   4.5e+02     144     165 ..      10      31 ..       5      46 .. 0.70
   2 !   63.8   0.0   2.4e-20   3.3e-18      72     284 ..      87     302 ..      28     307 .. 0.82

  Alignments for each domain:
  == domain 1    score: -2.4 bits;  conditional E-value: 3.3
   TIGR03169 144 etkslavvGgGaagvElalalr 165
                  +k+++vvG+ a+g   a   r
  MMETSP1137-20121227|8311_1  10 PAKRIVVVGAVAGGASAAARAR 31 
                 5679999999888876554444 PP

  == domain 2    score: 63.8 bits;  conditional E-value: 2.4e-20
   TIGR03169  72 vedeatgldleerkvllae.....reeisydvlsldvGsttalseve.gaadkavpvKPleellaaweellekakaseetkslavvGgGaagvElalalrkrlkkrglkaevsla.seakllqalsakvrklvkrllakrgievlekeevtevede......alll.aegetleadavllatgakapawLaes.glsldedGflavkktLqslshpevFaaGDcavik 284
                 v  e++++d +++ v++++     +e+ +yd l l  Gs++ +  +   ++  a++ + le++   +++ l      +++k+ +v+GgG+ g+E+a  l++    rglk  v+l+ + ++ll+ l +++  ++++ ++ +gi+v++ ++++  ed+       ++l +   +++ad+vll  g++a + La+s g++l+++G + v+++L++ s p+++a+GD + +k
  MMETSP1137-20121227|8311_1  87 VLTEVISIDSQAKTVTTRHlptgtEETHPYDDLILSPGSKPFIPPIPgIKRPGAFALRNLEDMDV-IHSWLSG----KDAKTAVVAGGGFIGIEMAEQLHR----RGLK--VTLVeALPQLLAPLDPEMAMMIQEEMESHGIRVVTGKPIKAFEDNasalcgDVVLgDGVPNIPADMVLLGLGVRADTALAKSaGIELNARGGIVVDSQLRT-SVPNIWAVGDAIEVK 302
                 78899******999998752222145689**************9998678899*****9998765.4444444....4567899**********9977665....5666..7777689************************************998888885555245569**************999987659****************9.9*********99876 PP

>> TIGR01421  gluta_reduc_1: glutathione-disulfide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.5   0.0   2.1e-18   2.9e-16     165     427 ..     160     431 ..      82     440 .. 0.80

  Alignments for each domain:
  == domain 1    score: 57.5 bits;  conditional E-value: 2.1e-18
   TIGR01421 165 lPkrvvivGaGyiavelaGvlhglGsktdlvirrervlrsfdelisekvveelekaglevhklskvvkvektveg.klvitledgkeiedvdeliwaiGrkpntkdlglekvgvkldekgyikvdeyqntnvegiyalGd.......vvGk...veltPvaiaaGrklserlfegkedakldyenvPtvvfshPeigtvGlteke.aiekyGkenvkvykssftamyyaltkekqksrlklvcagkeekvvGlhiiG.lgvdellqGfavaikmGa 427
                   k  v+ G G+i++e+a  lh  G k  lv    + l  +d  ++  + ee+e +g++v + + ++  e ++++    + l dg     +d ++ ++G + +t     + +g++l+ +g i vd    t+v++i+a+Gd       +vG    v l+  a + Gr +++ +f++ ++ k  + +    vf   ++gt Gl e    + +   + v ++  s +  y   ++   k  +  v  ++e +v+G   +G +g+d+ +   a a++ G 
  MMETSP1137-20121227|8311_1 160 DAKTAVVAGGGFIGIEMAEQLHRRGLKVTLVEALPQLLAPLDPEMAMMIQEEMESHGIRVVTGKPIKAFEDNASAlCGDVVLGDGVPNIPADMVLLGLGVRADT--ALAKSAGIELNARGGIVVDSQLRTSVPNIWAVGDaievknpIVGGqwmVALAGPANRQGRMVADNIFGKXREFKGTFGTSVVRVFNLTAAGT-GLNERGlQMANLKYQAVHLFPNSHAGYYPGASQIALKLLFE-VGGENEGRVLGAQAVGnDGADKRIDVIATAMQAGL 431
                 45778999******************************************************************955578899999999**********99443..446789****************************3333333233312245566667789******************999999999988887.99997525667777889999999999888777766666655.56667779999999994478888888888888775 PP

>> TIGR01423  trypano_reduc: trypanothione-disulfide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0       4.3   5.9e+02       6      33 ..      14      39 ..      11      54 .. 0.68
   2 !   51.7   0.0   7.6e-17     1e-14     186     453 ..     160     436 ..     115     445 .. 0.82

  Alignments for each domain:
  == domain 1    score: -3.5 bits;  conditional E-value: 4.3
   TIGR01423  6 lvvigagsggleagwnaaslykkrvavv 33
                +vv+ga +gg  a   a  l  +  a +
  MMETSP1137-20121227|8311_1 14 IVVVGAVAGGASAAARARRLDEH--ATI 39
                7999******9998888777543..444 PP

  == domain 2    score: 51.7 bits;  conditional E-value: 7.6e-17
   TIGR01423 186 apkrvltvgggyisvefagifnaykavggkvdlayrndmilrgfdselrkeltkqlvangidvrtnenpakveknadg.skhvvfesgk.eldvdvvmlaigrlprsqtlqldkvgveladkgaikvdeysktnvdniyaigd........vtdr..vmltpvainegaavvdtvfaskp.rktdhtkvasavfsippigvcglve...eeaakkyekvavyessftplmhnisgskykkfvvkivtdhadgevlgvhllg.dsspeiiqavaiclklnakisdf 453
                   k +++ ggg+i +e+a      + +g kv+l+    ++l  +d e+   + +++ + gi v t +     e na   +  vv+  g  ++  d+v+l +g   r++t   + +g+el  +g i vd+  +t v+ni+a+gd        v ++  v l+  a  +g  v d +f++    k         vf +   g+ gl e   + a  ky+ v ++  s +      s    k +    v    +g vlg + +g d + + i+ +a +++ + k+ d+
  MMETSP1137-20121227|8311_1 160 DAKTAVVAGGGFIGIEMAEQ---LHRRGLKVTLVEALPQLLAPLDPEMAMMIQEEMESHGIRVVTGKPIKAFEDNASAlCGDVVLGDGVpNIPADMVLLGLG--VRADTALAKSAGIELNARGGIVVDSQLRTSVPNIWAVGDaievknpiVGGQwmVALAGPANRQGRMVADNIFGKXReFKGTFGTSVVRVFNLTAAGT-GLNErglQMANLKYQAVHLFPNSHAGYYPGASQIALKLLF--EVGGENEGRVLGAQAVGnDGADKRIDVIATAMQAGLKVDDL 436
                 56889999*********975...5789**************************************9988889999886356788888853789999999988..588888899*****************************94442222222332244666788899********9643134444455567899999887.6766222457889******999999998888777766443..4788899*******99945677889*********9999996 PP

>> TIGR01438  TGR: thioredoxin and glutathione reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.0      0.28        38       5      30 ..      14      39 ..      12      63 .. 0.79
   2 !   43.3   0.0   3.4e-14   4.7e-12     131     452 ..     103     437 ..      87     445 .. 0.67

  Alignments for each domain:
  == domain 1    score: 0.8 bits;  conditional E-value: 0.28
   TIGR01438  5 liviGgGsGGlaaakeaaklgakvll 30
                ++v+G+ +GG +aa +a  l+++  +
  MMETSP1137-20121227|8311_1 14 IVVVGAVAGGASAAARARRLDEHATI 39
                699**************999876544 PP

  == domain 2    score: 43.3 bits;  conditional E-value: 3.4e-14
   TIGR01438 131 katdkkkkeeilsakrvliatGlrpkypddieGakelsits.......ddlfs.lkkvpGktlvv.GasyvalecaGflaalgldvtvl.vrsillrGfdqdcavkvkeylkeqGvkfkeqvlpkkvekveakvlvkftdkdntieeeydtvlyaiGrkadlkklnlenvgvkvnkksgkiladelertnvpsiyavGdivedkl.........eltpvaikaGklladrlfkdskeivdyenvpttvftpleygavGls.eekaveky..Geenvevfhseftpleysvpsrkdsskcyakvvcl..kdedervvGlhfvGpnag.evtqGfavalrvgvkkkdld 452
                 +     ++ee+   + ++++ G +p +p  i+G k  +  +       d + s l+    kt vv G++++ +e a  l   gl+vt++     ll  +d ++a +++e ++ +G+++  +   k  e+  +    ++   d   +   d vl+ +G +ad+     +++g+++n +   i++d + rt+vp+i+avGd +e k+          l+  a + G+++ad +f++ +e     +  t+v   ++++a+G   +e+ ++      ++v +f +    +          s+   k++     +++ rv+G   vG + + + +  +a a++ g+k +dl 
  MMETSP1137-20121227|8311_1 103 TRHLPTGTEETHPYDDLILSPGSKPFIP-PIPGIKRPGAFAlrnledmDVIHSwLSGKDAKTAVVaGGGFIGIEMAEQLHRRGLKVTLVeALPQLLAPLDPEMAMMIQEEMESHGIRVVTGKPIKAFEDNASALCGDVVLGDGVPNIPADMVLLGLGVRADTAL--AKSAGIELNARG-GIVVDSQLRTSVPNIWAVGDAIEVKNpivggqwmvALAGPANRQGRMVADNIFGKXREFK--GTFGTSVVRVFNLTAAGTGlNERGLQMAnlKYQAVHLFPNSHAGYYPG---A---SQIALKLLFEvgGENEGRVLGAQAVGNDGAdKRIDVIATAMQAGLKVDDLA 437
                 3344488999999999**********99.5999987543211112111344444566777887664999*****************96414456899********************988866666666666555555544444455689*******9999864..4799****9885.5999****************999775222222222456667899*********9887643..245666666666666665423444443300334444444443333222...2...222333332200345568999999988755156888888999988888875 PP

>> TIGR01316  gltA: glutamate synthase (NADPH), homotetrameric
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.0      0.43        59     272     300 ..      11      39 ..       6      52 .. 0.76
   2 !    8.7   0.0    0.0011      0.15     132     167 ..     159     195 ..     147     198 .. 0.84
   3 !   35.3   0.1   8.7e-12   1.2e-09     343     431 ..     217     305 ..     203     320 .. 0.88

  Alignments for each domain:
  == domain 1    score: 0.1 bits;  conditional E-value: 0.43
   TIGR01316 272 gkkvvviGgGntavdaartalrlGaevhv 300
                 +k++vv+G+      aa  a rl    ++
  MMETSP1137-20121227|8311_1  11 AKRIVVVGAVAGGASAAARARRLDEHATI 39 
                 78999999988888888889998877544 PP

  == domain 2    score: 8.7 bits;  conditional E-value: 0.0011
   TIGR01316 132 tkkkvavi.GaGpaGlavaselakkGhevtvfealhk 167
                  + k av+ G G  G+ +a++l ++G +vt+ eal++
  MMETSP1137-20121227|8311_1 159 KDAKTAVVaGGGFIGIEMAEQLHRRGLKVTLVEALPQ 195
                 45677766488899********************985 PP

  == domain 3    score: 35.3 bits;  conditional E-value: 8.7e-12
   TIGR01316 343 vkavkfektelqeerdsgekrkvpvtdeevkleadavivaiGqeankiiaedsslktskrGtivvdedletsieGvfaGGdvirGeatv 431
                 ++ v  + +++ e++ s     v+ +d    + ad v++ +G +a+  +a++++++ + rG ivvd +l+ts++ ++a Gd+i+ ++ +
  MMETSP1137-20121227|8311_1 217 IRVVTGKPIKAFEDNASALCGDVVLGDGVPNIPADMVLLGLGVRADTALAKSAGIELNARGGIVVDSQLRTSVPNIWAVGDAIEVKNPI 305
                 45555666788899999999999***********************************************************9877655 PP

>> TIGR01292  TRX_reduct: thioredoxin-disulfide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.5   0.1   7.4e-12     1e-09     142     276 ..     162     300 ..      12     316 .. 0.74

  Alignments for each domain:
  == domain 1    score: 35.5 bits;  conditional E-value: 7.4e-12
   TIGR01292 142 kevavvGggdsAveealyLskiakkVtlvhrrdklra.....ekillerlkknekievllnstveeikGde..kvesvkikntktkeeeelkvdgvFiaiGhepntellkel.leldeegyivvdeemrTsveGvfaaGDvrd 276
                 k+ +v Ggg   +e a  L++ + kVtlv    +l a      ++++++ ++ + i+v++ + +++ + ++     +v++ +       ++ +d v + +G+++ t+l k + +el+ +g ivvd++ rTsv+ ++a+GD  +
  MMETSP1137-20121227|8311_1 162 KTAVVAGGGFIGIEMAEQLHRRGLKVTLVEALPQLLApldpeMAMMIQEEMESHGIRVVTGKPIKAFEDNAsaLCGDVVLGDG----VPNIPADMVLLGLGVRADTALAKSAgIELNARGGIVVDSQLRTSVPNIWAVGDAIE 300
                 677888***************************999944333367778888888**********9999887545566777654....56799999*********************************************765 PP

>> TIGR03140  AhpF: alkyl hydroperoxide reductase, F subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.5   0.3   5.4e-11   7.4e-09     353     490 ..     162     302 ..       9     313 .. 0.85

  Alignments for each domain:
  == domain 1    score: 32.5 bits;  conditional E-value: 5.4e-11
   TIGR03140 353 kkvaviGGGnsGieaaidlaGivehvtvlefadelka..dkvlveklkslsnvdiltsaktkeivgdgdkvtglkykdrsseeekkleldGvfvqiGlvpnteflkda.velnrrGeividergrtsvkGifaaGdvttvp 490
                 k+  v GGG  Gie a  l     +vt++e + +l a  d  +   +++    + +  ++ k i++ +d+ ++l       +   ++  d v++ +G+ ++t++ k a +eln+rG iv+d++ rtsv+ i+a Gd+ +v+
  MMETSP1137-20121227|8311_1 162 KTAVVAGGGFIGIEMAEQLHRRGLKVTLVEALPQLLAplDPEMAMMIQEEMESHGIRVVTGKPIKAFEDNASALCGDVVLGDGVPNIPADMVLLGLGVRADTALAKSAgIELNARGGIVVDSQLRTSVPNIWAVGDAIEVK 302
                 4445569999**********9999***********9966655555555555555555566788999999999999999999999**********************999***************************99876 PP

>> TIGR04018  Bthiol_YpdA: putative bacillithiol system oxidoreductase, YpdA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0       1.4   1.9e+02     154     183 ..      13      42 ..      11      68 .. 0.76
   2 !   24.2   0.0     2e-08   2.7e-06     154     287 ..     163     297 ..      75     305 .. 0.89

  Alignments for each domain:
  == domain 1    score: -1.5 bits;  conditional E-value: 1.4
   TIGR04018 154 kvvvvGgknsavdaalelyrkgaevtlvvr 183
                 ++vvvG+    + aa    r + + t+ + 
  MMETSP1137-20121227|8311_1  13 RIVVVGAVAGGASAAARARRLDEHATITLF 42 
                 789999998888888888876655555443 PP

  == domain 2    score: 24.2 bits;  conditional E-value: 2e-08
   TIGR04018 154 kvvvvGgknsavdaalelyrkgaevtlvvrgeelsekvkyWvkpdlenrikegkikalfesevkeieeesvtletp...egeveeiendfvlaltGyrpdlelleklgveleedekipvydeetmEtnveglylaGv 287
                   vv Gg    ++ a +l+r+g +vtlv    +l + + + +   +++ ++++ i+++    +k+ e+++  l       + v +i++d vl+  G r+d++l +++g+el+++    v+d++ + t+v++++ +G 
  MMETSP1137-20121227|8311_1 163 TAVVAGGGFIGIEMAEQLHRRGLKVTLVEALPQLLAPLDPEMAMMIQEEMESHGIRVVTGKPIKAFEDNASALCGDvvlGDGVPNIPADMVLLGLGVRADTALAKSAGIELNARG-GIVVDSQ-LRTSVPNIWAVGD 297
                 467889999**********************************************************99877654334555667****************************995.4555554.99*******9995 PP

>> TIGR03315  Se_ygfK: putative selenate reductase, YgfK subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.1       1.4   1.9e+02     538     567 ..      12      43 ..       6      47 .. 0.58
   2 ?    3.5   0.0     0.014         2     536     567 ..     159     191 ..     145     198 .. 0.80
   3 !   20.4   0.0   1.1e-07   1.5e-05     758     822 ..     243     306 ..     205     335 .. 0.83

  Alignments for each domain:
  == domain 1    score: -3.1 bits;  conditional E-value: 1.4
   TIGR03315 538 hkvaviGaGPaGlsagyflar..aGlpvtvfe 567
                 +++ v+Ga   G sa+   +r  +   +t+fe
  MMETSP1137-20121227|8311_1  12 KRIVVVGAVAGGASAAARARRldEHATITLFE 43 
                 46677777777777666666622233455555 PP

  == domain 2    score: 3.5 bits;  conditional E-value: 0.014
   TIGR03315 536 ekhkvavi.GaGPaGlsagyflaraGlpvtvfe 567
                 +  k+av+ G+G  G+  +  l r Gl+vt++e
  MMETSP1137-20121227|8311_1 159 KDAKTAVVaGGGFIGIEMAEQLHRRGLKVTLVE 191
                 4446666538899*****************998 PP

  == domain 3    score: 20.4 bits;  conditional E-value: 1.1e-07
   TIGR03315 758 gelveleadaviaavGeqvdtellkklgieldekgkvvvneetketsvtnvfviGdakkGPativ 822
                 + + +++ad v++ +G + dt l k  giel+++g +vv+++   tsv+n++ +Gda +    iv
  MMETSP1137-20121227|8311_1 243 DGVPNIPADMVLLGLGVRADTALAKSAGIELNARGGIVVDSQ-LRTSVPNIWAVGDAIEVKNPIV 306
                 44558*************************************.99***********987666665 PP

>> TIGR01317  GOGAT_sm_gam: glutamate synthase, NADH/NADPH, small subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0       1.6   2.2e+02     284     317 ..      12      46 ..       6      53 .. 0.54
   2 ?    3.8   0.0     0.032       4.4     143     173 ..     161     191 ..     151     200 .. 0.85
   3 !   10.7   0.0   0.00026     0.036     401     455 ..     248     300 ..     230     328 .. 0.84
   4 ?   -3.4   0.0       5.2   7.1e+02     290     326 ..     414     452 ..     400     454 .. 0.77

  Alignments for each domain:
  == domain 1    score: -1.8 bits;  conditional E-value: 1.6
   TIGR01317 284 kkvvviGGGdtGadcvgtslrhg.aasvlqfeilP 317
                 k++vv+G    Ga   + + r +  a+++ fe+ P
  MMETSP1137-20121227|8311_1  12 KRIVVVGAVAGGASAAARARRLDeHATITLFEKGP 46 
                 55555555555555555555533133445555555 PP

  == domain 2    score: 3.8 bits;  conditional E-value: 0.032
   TIGR01317 143 GkkvavvGsGPaGlaaadqlnraGhtvtvfe 173
                  k+  v G G  G+  a+ql r G +vt+ e
  MMETSP1137-20121227|8311_1 161 AKTAVVAGGGFIGIEMAEQLHRRGLKVTLVE 191
                 46666779999*****************987 PP

  == domain 3    score: 10.7 bits;  conditional E-value: 0.00026
   TIGR01317 401 leadlvllalGfvgpeqallddlgvdkdergnikaeldesetsidGvfaaGdarr 455
                 ++ad+vll lG   +++al ++ g++ ++rg i   + + +ts++ ++a+Gda  
  MMETSP1137-20121227|8311_1 248 IPADMVLLGLGVR-ADTALAKSAGIELNARGGIVV-DSQLRTSVPNIWAVGDAIE 300
                 68*********75.6788999************55.56667***********865 PP

  == domain 4    score: -3.4 bits;  conditional E-value: 5.2
   TIGR01317 290 GGGdtGadcvgtslrhgaa..svlqfeilPkpPeerakd 326
                  G d   d ++t+++ g +   + q+e+   pP   akd
  MMETSP1137-20121227|8311_1 414 DGADKRIDVIATAMQAGLKvdDLAQLELCYAPPVGSAKD 452
                 588888999999999875522799999999999888776 PP

>> TIGR02352  thiamin_ThiO: glycine oxidase ThiO
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.2   2.4e-05    0.0033       2      29 ..     165     192 ..     164     196 .. 0.93

  Alignments for each domain:
  == domain 1    score: 14.4 bits;  conditional E-value: 2.4e-05
   TIGR02352   2 lviGgGviGlsvAveLakrghkvtllek 29 
                 +v+GgG iG  +A +L +rg kvtl+e 
  MMETSP1137-20121227|8311_1 165 VVAGGGFIGIEMAEQLHRRGLKVTLVEA 192
                 79***********************985 PP

>> TIGR03997  mycofact_OYE_2: mycofactocin system FadH/OYE family oxidoreductase 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   0.8     0.011       1.5     379     413 ..      11      47 ..       2     148 .. 0.67
   2 !    8.1   0.1    0.0012      0.16     378     412 ..     160     194 ..     147     227 .. 0.86
   3 ?   -3.6   0.0         4   5.5e+02     611     626 ..     284     299 ..     283     303 .. 0.88

  Alignments for each domain:
  == domain 1    score: 4.9 bits;  conditional E-value: 0.011
   TIGR03997 379 rkkvlvvGgGPaGleaaataarrG.h.rvtllereee 413
                  k+++vvG+  +G +aaa a r   h ++tl+e++  
  MMETSP1137-20121227|8311_1  11 AKRIVVVGAVAGGASAAARARRLDeHaTITLFEKGPD 47 
                 389*******999999999988652424789998765 PP

  == domain 2    score: 8.1 bits;  conditional E-value: 0.0012
   TIGR03997 378 rrkkvlvvGgGPaGleaaataarrGhrvtlleree 412
                   k+ +v+GgG  G+e a++  rrG +vtl+e   
  MMETSP1137-20121227|8311_1 160 DAKTAVVAGGGFIGIEMAEQLHRRGLKVTLVEALP 194
                 458899*************************9765 PP

  == domain 3    score: -3.6 bits;  conditional E-value: 4
   TIGR03997 611 slkdkvlevyriGDcl 626
                 +l+ +v++++ +GD++
  MMETSP1137-20121227|8311_1 284 QLRTSVPNIWAVGDAI 299
                 7999**********97 PP

>> TIGR03364  HpnW_proposed: FAD dependent oxidoreductase TIGR03364
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.1      0.61        84      69     100 ..      62      92 ..      12     114 .. 0.49
   2 !   13.2   0.1   5.4e-05    0.0073       3      31 ..     164     192 ..     162     197 .. 0.91

  Alignments for each domain:
  == domain 1    score: -0.1 bits;  conditional E-value: 0.61
   TIGR03364  69 elaekaglsvrenGslvlarteeelavleefa 100
                 e+ ++a+lsv+   sl+ ar + +++vl+e++
  MMETSP1137-20121227|8311_1  62 EITDRAKLSVQTPASLH-ARLNLDVRVLTEVI 92 
                 34444444444443332.44444455555544 PP

  == domain 2    score: 13.2 bits;  conditional E-value: 5.4e-05
   TIGR03364   3 vvvvGaGivGlahAlaaarrGlkVtvier 31 
                  vv G+G +G+ +A + +rrGlkVt++e 
  MMETSP1137-20121227|8311_1 164 AVVAGGGFIGIEMAEQLHRRGLKVTLVEA 192
                 5899**********************995 PP

>> TIGR03197  MnmC_Cterm: tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   0.1   5.1e-05     0.007       2      33 ..     164     195 ..     163     198 .. 0.90

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 5.1e-05
   TIGR03197   2 vavIGaGiAgaalalsLarrGvqvtllekdek 33 
                 ++v G+G  g+ +a++L rrG++vtl+e+ ++
  MMETSP1137-20121227|8311_1 164 AVVAGGGFIGIEMAEQLHRRGLKVTLVEALPQ 195
                 7899***********************98665 PP

>> TIGR03467  HpnE: squalene-associated FAD-dependent desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.2      0.31        42       1      31 [.      14      46 ..      14      48 .. 0.77
   2 ?   -1.8   0.0       2.2   3.1e+02     223     259 ..      83     121 ..      67     125 .. 0.82
   3 !   13.6   0.2   4.8e-05    0.0066       2      33 ..     165     196 ..     164     196 .. 0.94

  Alignments for each domain:
  == domain 1    score: 1.1 bits;  conditional E-value: 0.31
   TIGR03467  1 vvvvGgGlAGLaAAveL..araGvrvtllEarr 31
                +vvvG+   G +AA++    ++++ +tl+E ++
  MMETSP1137-20121227|8311_1 14 IVVVGAVAGGASAAARArrLDEHATITLFEKGP 46
                589999888888888762245789******987 PP

  == domain 2    score: -1.8 bits;  conditional E-value: 2.2
   TIGR03467 223 gevrlgtrvreleasaggiralve..aaeetlaadavvl 259
                  +vr+ t+v ++  +a+ ++++     +eet+++d  +l
  MMETSP1137-20121227|8311_1  83 LDVRVLTEVISIDSQAKTVTTRHLptGTEETHPYDDLIL 121
                 579999999999999999999888656778899999887 PP

  == domain 3    score: 13.6 bits;  conditional E-value: 4.8e-05
   TIGR03467   2 vvvGgGlAGLaAAveLaraGvrvtllEarrql 33 
                 vv GgG+ G+  A +L r+G++vtl+Ea +ql
  MMETSP1137-20121227|8311_1 165 VVAGGGFIGIEMAEQLHRRGLKVTLVEALPQL 196
                 799*************************9875 PP

>> TIGR01318  gltD_gamma_fam: glutamate synthase, small subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.3   0.1       8.1   1.1e+03     141     159 ..      11      29 ..       5      40 .. 0.66
   2 ?    3.9   0.0     0.026       3.5     140     175 ..     159     195 ..     146     201 .. 0.81
   3 !    9.9   0.0    0.0004     0.055     383     444 ..     246     302 ..     202     330 .. 0.77

  Alignments for each domain:
  == domain 1    score: -4.3 bits;  conditional E-value: 8.1
   TIGR01318 141 gkrvaviGaGpaGlacadv 159
                  kr+ v+Ga   G + a +
  MMETSP1137-20121227|8311_1  11 AKRIVVVGAVAGGASAAAR 29 
                 6778888877666665554 PP

  == domain 2    score: 3.9 bits;  conditional E-value: 0.026
   TIGR01318 140 tgkrvavi.GaGpaGlacadvlaraGvkvvvfdrype 175
                 ++ + av+ G+G  G+  a+ l r G kv++ +  p+
  MMETSP1137-20121227|8311_1 159 KDAKTAVVaGGGFIGIEMAEQLHRRGLKVTLVEALPQ 195
                 5667776648889****************99887766 PP

  == domain 3    score: 9.9 bits;  conditional E-value: 0.0004
   TIGR01318 383 avleadvviiafGfephamewlaehgikldskGrivaaeeselayqtsnpkifaGGdivrGa 444
                   ++ad+v++ +G ++ ++   ++ gi+l+ +G iv++     + +ts p+i+a Gd++   
  MMETSP1137-20121227|8311_1 246 PNIPADMVLLGLGVRADTA-LAKSAGIELNARGGIVVD----SQLRTSVPNIWAVGDAIEVK 302
                 469***********99765.67889************9....7899***********98654 PP

>> TIGR00275  TIGR00275: flavoprotein, HI0933 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   0.1     0.012       1.6       1      31 [.      14      46 ..      14      49 .. 0.92
   2 ?   -3.0   0.0       3.9   5.3e+02     118     160 ..      80     126 ..      67     128 .. 0.71
   3 ?    5.0   0.0     0.014       1.9       2      34 ..     165     197 ..     164     201 .. 0.92

  Alignments for each domain:
  == domain 1    score: 5.3 bits;  conditional E-value: 0.012
   TIGR00275  1 viiiGgGaaGlmaAitaae..egakVlllEknk 31
                ++++G+ a G  aA++a +  e+a ++l+Ek  
  MMETSP1137-20121227|8311_1 14 IVVVGAVAGGASAAARARRldEHATITLFEKGP 46
                79****************9989999*****975 PP

  == domain 2    score: -3.0 bits;  conditional E-value: 3.9
   TIGR00275 118 elgvevlteskvksikkeeekfevet....ekkeleakkvilatGgk 160
                 +l+ +v++ ++v si++++++++ +     ++++  ++ +il+ G+k
  MMETSP1137-20121227|8311_1  80 RLNLDVRVLTEVISIDSQAKTVTTRHlptgTEETHPYDDLILSPGSK 126
                 56677788888888866665554433343778888899999999985 PP

  == domain 3    score: 5.0 bits;  conditional E-value: 0.014
   TIGR00275   2 iiiGgGaaGlmaAitaaeegakVlllEknkkig 34 
                 ++ GgG  G+  A ++ ++g+kV+l+E+  +++
  MMETSP1137-20121227|8311_1 165 VVAGGGFIGIEMAEQLHRRGLKVTLVEALPQLL 197
                 799************************998876 PP

>> TIGR01988  Ubi-OHases: ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0      0.85   1.2e+02       2      35 ..      14      48 ..      13      56 .. 0.77
   2 !   10.7   0.0   0.00026     0.035       3      33 ..     165     194 ..     163     206 .. 0.89

  Alignments for each domain:
  == domain 1    score: -0.8 bits;  conditional E-value: 0.85
   TIGR01988  2 ivIvGgGlvGlalAlaLassa.dlkvalveakaae 35
                iv+vG+   G++ A++ ++   +  ++l+e+ + +
  MMETSP1137-20121227|8311_1 14 IVVVGAVAGGASAAARARRLDeHATITLFEKGPDP 48
                89999988888888776665568899999988765 PP

  == domain 2    score: 10.7 bits;  conditional E-value: 0.00026
   TIGR01988   3 vIvGgGlvGlalAlaLassadlkvalveaka 33 
                 v++GgG +G  +A +L +++ lkv+lvea +
  MMETSP1137-20121227|8311_1 165 VVAGGGFIGIEMAEQLHRRG-LKVTLVEALP 194
                 89***************888.*******975 PP

>> TIGR01790  carotene-cycl: lycopene cyclase family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.1   0.00026     0.036       3      34 ..     165     196 ..     163     204 .. 0.92

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 0.00026
   TIGR01790   3 iviGgGlAglaiAlelakpglrvqlieaapkl 34 
                 +v GgG  g+ +A +l ++gl+v l+ea p+l
  MMETSP1137-20121227|8311_1 165 VVAGGGFIGIEMAEQLHRRGLKVTLVEALPQL 196
                 899*************************9986 PP

>> TIGR02032  GG-red-SF: geranylgeranyl reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.0     0.034       4.7       3      41 ..      14      54 ..      13     104 .. 0.81
   2 ?    7.1   0.1    0.0059      0.81       4      31 ..     165     192 ..     163     195 .. 0.95
   3 ?   -2.0   0.0       3.7   5.1e+02     259     281 ..     286     308 ..     273     316 .. 0.83

  Alignments for each domain:
  == domain 1    score: 4.6 bits;  conditional E-value: 0.034
   TIGR02032  3 vvvvGaGpaGssaAlrlak..kGlrVlllekkelprekeCg 41
                +vvvGa   G+saA+r+ +  + +++ l+ek   p    Cg
  MMETSP1137-20121227|8311_1 14 IVVVGAVAGGASAAARARRldEHATITLFEKGPDPSFANCG 54
                79****999***99998642266889999999999999997 PP

  == domain 2    score: 7.1 bits;  conditional E-value: 0.0059
   TIGR02032   4 vvvGaGpaGssaAlrlakkGlrVlllek 31 
                 vv G+G  G  +A++l + Gl+V l+e 
  MMETSP1137-20121227|8311_1 165 VVAGGGFIGIEMAEQLHRRGLKVTLVEA 192
                 9************************995 PP

  == domain 3    score: -2.0 bits;  conditional E-value: 3.7
   TIGR02032 259 ktvtgnvllvGDAAglVkPltGe 281
                 +t+  n+ +vGDA  + +P+ G+
  MMETSP1137-20121227|8311_1 286 RTSVPNIWAVGDAIEVKNPIVGG 308
                 67778999***********9998 PP

>> TIGR02981  phageshock_pspE: phage shock operon rhodanese PspE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   0.00045     0.061      21      85 ..     488     552 ..     467     563 .. 0.77

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 0.00045
   TIGR02981  21 widvrvpeqyqreh..vqgainiplkevkerietvvpdkndtvklycnagrqsgqakdillemgyth 85 
                  +dvr p++ + +     g++nip+ e+++ri+    dk   +   c  g++   a  il++ g+  
  MMETSP1137-20121227|8311_1 488 LLDVRSPKEIETKGglPAGTMNIPVDELRSRINELPKDK--IIVTSCFVGQRGYYAARILMQNGFXV 552
                 57899998776553114799************9976665..57778999*99999*****9999863 PP

>> TIGR00137  gid_trmFO: tRNA:m(5)U-54 methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   0.00036      0.05       3      38 ..     164     199 ..     162     214 .. 0.91

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 0.00036
   TIGR00137   3 vnviGgGlaGseaawqlakeGvrvilyemrpkkltp 38 
                   v GgG+ G e a ql ++G++v l+e  p+ l+p
  MMETSP1137-20121227|8311_1 164 AVVAGGGFIGIEMAEQLHRRGLKVTLVEALPQLLAP 199
                 5689***************************99998 PP

>> TIGR02734  crtI_fam: phytoene desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.1       1.1   1.5e+02       1      29 [.      14      44 ..      14      48 .. 0.70
   2 ?   11.0   0.2   0.00019     0.026       1      30 [.     164     193 ..     164     196 .. 0.93

  Alignments for each domain:
  == domain 1    score: -1.4 bits;  conditional E-value: 1.1
   TIGR02734  1 avViGaGlgGLAlAirLaa..aGievtvlek 29
                +vV+Ga +gG ++A+r  +  +  ++t++ek
  MMETSP1137-20121227|8311_1 14 IVVVGAVAGGASAAARARRldEHATITLFEK 44
                69****9999999987654224455666665 PP

  == domain 2    score: 11.0 bits;  conditional E-value: 0.00019
   TIGR02734   1 avViGaGlgGLAlAirLaaaGievtvlekr 30 
                 avV G+G+ G+ +A +L + G +vt++e+ 
  MMETSP1137-20121227|8311_1 164 AVVAGGGFIGIEMAEQLHRRGLKVTLVEAL 193
                 69**************************85 PP

>> TIGR03143  AhpF_homolog: putative alkyl hydroperoxide reductase F subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.2       4.4     6e+02     290     306 ..      16      32 ..      12      37 .. 0.84
   2 ?   -1.7   0.0       1.3   1.8e+02     146     173 ..     164     191 ..     157     215 .. 0.88
   3 ?    8.7   0.0   0.00087      0.12     248     283 ..     263     300 ..     246     307 .. 0.80

  Alignments for each domain:
  == domain 1    score: -3.5 bits;  conditional E-value: 4.4
   TIGR03143 290 vvtavadGaiaateler 306
                 vv ava Ga aa+++ r
  MMETSP1137-20121227|8311_1  16 VVGAVAGGASAAARARR 32 
                 789********999887 PP

  == domain 2    score: -1.7 bits;  conditional E-value: 1.3
   TIGR03143 146 vlviGgGfaaaeeavfltkyakkvtviv 173
                  +v GgGf   e a  l + + kvt++ 
  MMETSP1137-20121227|8311_1 164 AVVAGGGFIGIEMAEQLHRRGLKVTLVE 191
                 5799*********************985 PP

  == domain 3    score: 8.7 bits;  conditional E-value: 0.00087
   TIGR03143 248 selfkg.kvelderGyvvtnedletnveGvyaaGd.lr 283
                 ++l k   +el+ rG +v + +l+t+v+ ++a+Gd + 
  MMETSP1137-20121227|8311_1 263 TALAKSaGIELNARGGIVVDSQLRTSVPNIWAVGDaIE 300
                 555554159*************************9444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (574 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       192  (0.0468064); expected 82.0 (0.02)
Passed bias filter:                      172  (0.0419308); expected 82.0 (0.02)
Passed Vit filter:                        59  (0.0143832); expected 4.1 (0.001)
Passed Fwd filter:                        30  (0.00731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              30  [number of targets reported over threshold]
# CPU time: 0.94u 0.17s 00:00:01.10 Elapsed: 00:00:01.34
# Mc/sec: 565.39
//
Query:       MMETSP1137-20121227|8312_1  [L=280]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        5.5    5.2  11.8        2.4    6.4   4.3    2.6  3  TIGR03685 L21P_arch: 50S ribosomal protein L12P


Domain annotation for each model (and alignments):
>> TIGR03685  L21P_arch: 50S ribosomal protein L12P
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0      0.11   4.6e+02      50      76 ..      79     105 ..      74     122 .. 0.77
   2 ?    1.1   0.1     0.026   1.1e+02      63      98 ..     137     172 ..     121     176 .. 0.41
   3 ?    6.4   4.3   0.00058       2.4      55     105 .]     175     231 ..     168     231 .. 0.53

  Alignments for each domain:
  == domain 1    score: -0.9 bits;  conditional E-value: 0.11
   TIGR03685  50 ieeaiekaaaapvaaaaaaaaaaeaae 76 
                 i++ +++ a  p+   a+a+a+ ++++
  MMETSP1137-20121227|8312_1  79 IQDLVKRLADRPARPKAPASASRNRNA 105
                 778888888888888888877776665 PP

  == domain 2    score: 1.1 bits;  conditional E-value: 0.026
   TIGR03685  63 aaaaaaaaaaeaaeeekeeeeeeeeekeeeeeeale 98 
                 a ++a++a+a+   + ++  + +ee+ +e++++al+
  MMETSP1137-20121227|8312_1 137 APPPASSAPAKGLISLDDLSDLDEENLDEQDDAALS 172
                 222222222222233333333444444444444443 PP

  == domain 3    score: 6.4 bits;  conditional E-value: 0.00058
   TIGR03685  55 ekaaaapvaaaaaaaaaaeaaeeekeeee......eeeeekeeeeeealegLgaLFG 105
                 ++a +  vaaa++  aa ++ +e+++ ++      ++ ++ +++e+ ++ +L +L G
  MMETSP1137-20121227|8312_1 175 AEAKVSSVAAAGQNEAAGKPVKEKSKGKKkkekgsKKTKKGKSAEDPSGPSLNSLLG 231
                 556666666666665555555444444332223334444555556666667777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (280 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       105  (0.0255973); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.25u 0.18s 00:00:00.43 Elapsed: 00:00:00.39
# Mc/sec: 947.61
//
Query:       MMETSP1137-20121227|8313_1  [L=524]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (524 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       115  (0.0280351); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.18s 00:00:00.55 Elapsed: 00:00:00.52
# Mc/sec: 1330.04
//
Query:       MMETSP1137-20121227|8314_1  [L=572]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      2e-09   33.6   0.1    2.9e-09   33.2   0.0    1.1  1  TIGR03903 TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein


Domain annotation for each model (and alignments):
>> TIGR03903  TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.2   0.0     7e-13   2.9e-09      64     181 ..     196     316 ..     190     340 .. 0.80

  Alignments for each domain:
  == domain 1    score: 33.2 bits;  conditional E-value: 7e-13
   TIGR03903  64 rtlrevLaadGaLpaaetgrLmlqvLDalaaahdaGvvhRDLkPqnimvsaadveshakvLDFGigaLlpgvedadeat....ltrttevlGsPaYa.aPeqLRgepvtaksDlYaWGLivle 181
                  tl ++La+ G+L+   t     q L +l   h+  v hR L P+ i++s   ++   ++ DF  +    gv  +  ++       +     + +Y+ +Pe L g pv a++D++a G i+ e
  MMETSP1137-20121227|8314_1 196 MTLGALLATTGSLSHDYTLWFTWQLLQGLCVLHASNVAHRSLHPDAILISRHSLR--LMIADFASTGSCDGVSVVPDTNggpwKGSAAQQQEATHYCtSPEALLGQPVGAAADVWAVGCIIAE 316
                 6999**********************************************99876..689999766655555544433311111223333344567648*********************988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (572 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        50  (0.0121892); expected 82.0 (0.02)
Passed bias filter:                       37  (0.00901999); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.17s 00:00:00.56 Elapsed: 00:00:00.52
# Mc/sec: 1451.88
//
Query:       MMETSP1137-20121227|8316_1  [L=530]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (530 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       144  (0.0351048); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.15s 00:00:00.50 Elapsed: 00:00:00.85
# Mc/sec: 822.99
//
Query:       MMETSP1137-20121227|8317_1  [L=289]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.4e-31  107.2   0.0    3.1e-31  106.8   0.0    1.1  1  TIGR00486 YbgI_SA1388: dinuclear metal center protein, YbgI/SA1388 family


Domain annotation for each model (and alignments):
>> TIGR00486  YbgI_SA1388: dinuclear metal center protein, YbgI/SA1388 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  106.8   0.0   7.5e-35   3.1e-31       6     250 .]      17     285 ..      14     285 .. 0.89

  Alignments for each domain:
  == domain 1    score: 106.8 bits;  conditional E-value: 7.5e-35
   TIGR00486   6 liqlleqfspkalaeegdkiGLqvg....tlnkeikkvlvtldvsesvideAiekevdliiahHplifkslkrlstdqkakrlikillkndiavyaaHtnlDvadgGvndlLaeaLeleepkeyeeq......glGrvgelkkeitlkelvlevkkklnvkevlvvkkad............ekvkkvAvvsGsGnsyiekalrkgvdvyitGdlshheahlakelGlnvidagHyatermgv....rkltemln.kkegleivvsetdtnp 250
                 +  +l + +p  la egd+ GL v      +  +  ++++++d++e+v+ eA +  ++++i++ p+  +++  lst  + +r++  + ++++avy++H++ D a+gG nd+La+ L    + ++  +      glGr+ e + +  l  lv+  k+ l+  +v+++  a               vk vAv  G+ + +++   + ++dv i  ++sh +++ a+  G+ vi ag +  er+ +    ++l e ++ ++ ++ ++ s++d np
  MMETSP1137-20121227|8317_1  17 VAASLARRYPLSLAREGDNVGLTVAalreVDRGNSAAIMLCVDLTEQVLCEALAIHAAFVITYFPMPSHPIRSLSTADVTGRILLNCAQHNLAVYSVHSACDHAPGGINDWLAKSLAPGRSRPIVPDvnmpdaGLGRLLECEVSTPLSLLVERLKQLLQLRHVRLAFGAIvdeqnlaraqefCFVKTVAVQVGEAAAVLQ---NIAADVMIASEMSHSDIIAANAKGIVVILAGQSTIERGYLgylsQQLQEEFAdSDWNVKVKCSQIDGNP 285
                 566788999***************9555555667889*********************************************************************************996666665666666**************************9999987555556678999998889**********999444...4579**********************************5544699999999999999999999999775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (289 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       132  (0.0321794); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.24u 0.13s 00:00:00.37 Elapsed: 00:00:00.45
# Mc/sec: 847.66
//
Query:       MMETSP1137-20121227|8319_1  [L=64]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       191  (0.0465627); expected 82.0 (0.02)
Passed bias filter:                      183  (0.0446124); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.18s 00:00:00.31 Elapsed: 00:00:00.28
# Mc/sec: 291.29
//
Query:       MMETSP1137-20121227|8320_1  [L=475]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.7e-24   84.5   0.1    4.2e-24   83.2   0.1    1.5  2  TIGR03169 Nterm_to_SelD: pyridine nucleotide-disulfide oxidoreductase family protein
    3.3e-24   83.2   0.1    1.6e-23   81.0   0.0    1.8  2  TIGR01350 lipoamide_DH: dihydrolipoyl dehydrogenase
      3e-19   67.0   0.0    4.8e-18   63.0   0.0    2.0  2  TIGR03385 CoA_CoA_reduc: CoA-disulfide reductase
    8.2e-16   55.8   0.8    2.2e-15   54.5   0.1    1.7  2  TIGR02053 MerA: mercuric reductase
    4.6e-14   49.6   0.9    2.4e-13   47.2   0.1    1.9  2  TIGR02374 nitri_red_nirB: nitrite reductase [NAD(P)H], large subunit
    1.2e-10   38.7   0.0    2.5e-10   37.7   0.0    1.4  2  TIGR03452 mycothione_red: mycothione reductase
    1.2e-09   35.1   0.0    2.1e-09   34.3   0.0    1.3  1  TIGR01424 gluta_reduc_2: glutathione-disulfide reductase
    1.2e-07   28.5   0.1    2.1e-07   27.6   0.0    1.4  2  TIGR01423 trypano_reduc: trypanothione-disulfide reductase
    1.5e-07   28.4   0.0    9.8e-07   25.8   0.0    1.9  2  TIGR01438 TGR: thioredoxin and glutathione reductase
    4.6e-06   23.5   0.1       0.01   12.5   0.0    2.3  2  TIGR01988 Ubi-OHases: ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family
    8.8e-06   23.0   0.1    1.6e-05   22.1   0.0    1.5  2  TIGR01421 gluta_reduc_1: glutathione-disulfide reductase
    3.8e-05   21.2   0.1     0.0052   14.2   0.0    2.3  2  TIGR02964 xanthine_xdhC: xanthine dehydrogenase accessory protein XdhC
    8.5e-05   19.3   0.2    0.00057   16.6   0.1    2.1  2  TIGR04018 Bthiol_YpdA: putative bacillithiol system oxidoreductase, YpdA family
    0.00041   17.1   1.7     0.0054   13.4   0.0    2.7  3  TIGR01292 TRX_reduct: thioredoxin-disulfide reductase
     0.0016   15.1   0.3       0.24    8.0   0.0    2.4  2  TIGR01984 UbiH: 2-polyprenyl-6-methoxyphenol 4-hydroxylase
     0.0023   15.1   2.8      0.083   10.0   0.0    2.9  3  TIGR03467 HpnE: squalene-associated FAD-dependent desaturase
     0.0044   13.4   0.8       0.22    7.8   0.3    2.3  2  TIGR03140 AhpF: alkyl hydroperoxide reductase, F subunit
     0.0047   13.9   2.5        1.7    5.5   0.1    3.1  3  TIGR01790 carotene-cycl: lycopene cyclase family protein
     0.0056   13.6   0.7          1    6.2   0.0    2.4  3  TIGR01789 lycopene_cycl: lycopene cyclase
     0.0085   12.7   1.8          2    4.9   0.0    3.0  3  TIGR01316 gltA: glutamate synthase (NADPH), homotetrameric
  ------ inclusion threshold ------
      0.032   10.9   0.8        2.1    4.9   0.2    2.9  2  TIGR01317 GOGAT_sm_gam: glutamate synthase, NADH/NADPH, small subunit
      0.052    9.9   0.4       0.62    6.4   0.0    2.1  2  TIGR00562 proto_IX_ox: protoporphyrinogen oxidase
       0.14    9.0   6.0        3.3    4.5   0.0    3.0  3  TIGR03364 HpnW_proposed: FAD dependent oxidoreductase TIGR03364


Domain annotation for each model (and alignments):
>> TIGR03169  Nterm_to_SelD: pyridine nucleotide-disulfide oxidoreductase family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.0     0.065        12     141     172 ..      78     106 ..      66     126 .. 0.62
   2 !   83.2   0.1   2.3e-26   4.2e-24       2     319 ..      85     391 ..      84     396 .. 0.80

  Alignments for each domain:
  == domain 1    score: 2.8 bits;  conditional E-value: 0.065
   TIGR03169 141 aseetkslavvGgGaagvElalalrkrlkkrg 172
                 +++ +k+++++Gg +ag+    alr++  +++
  MMETSP1137-20121227|8320_1  78 NAQPAKKVVIIGGSFAGLA---ALRELAGHAQ 106
                 4555678999998888863...4444444444 PP

  == domain 2    score: 83.2 bits;  conditional E-value: 2.3e-26
   TIGR03169   2 LvLvGgGHahalvLkklamkpkagvrvtlispssttlYSGMlPgliaghysedeiridlrrlaekagaelvedeatgldleerkvll..aeree..isydvlsldvGsttalsevegaadkavpvKPleellaaweellekakaseetkslavvGgGaagvElalalrkrlkkrglkaevsla.seakllqalsakvrklvkrllakrgievlekeevtevedealllaegetleadavllatgakap.awLaesglsldedGf...lavkktLqslshpevFaaGDcavikeaprpkaGVyAVrqakiLaaNLeaalegqplkkfr 319
                 +v++Gg  a +  L++la   +a+++vtl++ +++  Y+   Pg++    + + +r  l      ++ ++v +   ++ +e + v +  ++++e  ++yd+l+l vGst +        + +v + P  +l ++  + +++a++ +e+ks+++vG+Ga gvEla  + +  +++ +    +++  +a++l+++ +k+ + +++ l++rg +++   +v+ + +++++l+ g+t++ad+v  + g+ +  ++La+s l+    Gf   ++v+++Lq+ + p+vF +GD+++ +++++ k G  A  ++++ a+N+ ++ e++pl ++ 
  MMETSP1137-20121227|8320_1  85 VVIIGGSFAGLAALRELAG--HAQLEVTLVDLKDYFEYT---PGILRCFVDASYLRH-LTCALPARRNAFVHGSLGAVSTEIESVSVigRDGREvnLPYDYLVLAVGSTYQEPI-----KPVV-AEP--TLQERSASWRQAASRLSEAKSVIIVGAGAVGVELAAEILESRPEMTV----TFVdFAAAVLPGFDRKACEFATQWLKQRGAKMMLGVQVETIGESSVTLKGGQTVSADIVYKCVGVLPNtEMLAASSLAKS-FGFrnaVQVNDHLQVDGLPNVFCVGDMMSHSSREL-KLGHTAEVNGHLAAKNIIRMAEEKPLLEYP 391
                 7999******999999965..68899******9999996...999988887777764.5555556667799998776666555555411666654589***********96333.....2333.334..34444445555555568999**************9877666666655....56658999*********************************************************986269999999754.354444********************987766655.8999999999999************99996 PP

>> TIGR01350  lipoamide_DH: dihydrolipoyl dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.0      0.43        77       3     201 ..      84     114 ..      61     118 .. 0.59
   2 !   81.0   0.0   8.9e-26   1.6e-23     117     337 ..     161     385 ..     146     403 .. 0.81

  Alignments for each domain:
  == domain 1    score: -0.4 bits;  conditional E-value: 0.43
   TIGR01350   3 dvvviGgGpgGYvaAiraaqlglkvalvekeklGGtClnvGCiPtKalLksaevveelkeakelgievenvkldlekllerkekvvkklvgGvkaLlkknkvevikGeaklldkkevevkkekkekkleakniiiAtGseprelplkleedekvvitseealelkevpeslvivGgGviGvEfasifaklGvkvtviel 201
                  vv+iGg  +G  a                                                                                                                                                                        +  +  + + +vt+++l
  MMETSP1137-20121227|8320_1  84 KVVIIGGSFAGLAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------LRELAGHAQLEVTLVDL 114
                 34555555555433........................................................................................................................................................................33344444444444444 PP

  == domain 2    score: 81.0 bits;  conditional E-value: 8.9e-26
   TIGR01350 117 kevevkkekke.kkleakniiiAtGseprelplk..leedek.vvitseealelkevpeslvivGgGviGvEfas.if.aklGvkvtvielldrilpaldaevskvlkkklkkkgvkiltnakvtevekeedevvveakkkevetleaekvLvavGrkpnleelgleklgveldergaikvdeelrtn.vpgiyaiGDvig....klmLAhvAskegvvaaekiagkeksei 337
                 ++v+v +++++  +l ++ +++A Gs+ +e+  +   e   + +  + ++a +  +  +s++ivG+G++GvE+a  i+ ++  + vt ++++  +lp +d++ ++++++ lk++g k++ + +v+++   e +v+++  ++  +t++a+ v  +vG+ pn+e l   +l  ++  r+a++v+++l++  +p+++ +GD+++    +l+L h+A+ +g +aa++i+  ++ e 
  MMETSP1137-20121227|8320_1 161 ESVSVIGRDGReVNLPYDYLVLAVGSTYQEPIKPvvAEPTLQeRSASWRQAASRLSEAKSVIIVGAGAVGVELAAeILeSRPEMTVTFVDFAAAVLPGFDRKACEFATQWLKQRGAKMMLGVQVETI--GESSVTLK--GG--QTVSADIVYKCVGVLPNTEMLAASSLAKSFGFRNAVQVNDHLQVDgLPNVFCVGDMMShssrELKLGHTAEVNGHLAAKNIIRMAE-EK 385
                 5677766666535677999*******98887766653333333668889999999999***************8633325678999***************************************55..55566655..66..79*****************************************96489*******9862222679****************98666.33 PP

>> TIGR03385  CoA_CoA_reduc: CoA-disulfide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.0     0.022       3.9     147     183 ..      80     117 ..      70     121 .. 0.81
   2 !   63.0   0.0   2.7e-20   4.8e-18       1     288 [.      84     359 ..      84     411 .. 0.73

  Alignments for each domain:
  == domain 1    score: 4.0 bits;  conditional E-value: 0.022
   TIGR03385 147 kkvekvvviGgGyiglemvealk.ergkevtliersek 183
                 + ++kvv+iGg + gl  +  l  +  +evtl++++++
  MMETSP1137-20121227|8320_1  80 QPAKKVVIIGGSFAGLAALRELAgHAQLEVTLVDLKDY 117
                 56799***********9876654277899***998765 PP

  == domain 2    score: 63.0 bits;  conditional E-value: 2.7e-20
   TIGR03385   1 kivivGgvaaGasaAsrvrRLkkesdiivfekteivsfanCglPYfvggviedrkkllaytpekfiekkkidvktksevikvdkeektvvvknnktnekyeesyDkLilstGAkpkileiegieldavftlrnledaeaikkyldkkkvekvvviGgGyiglemv.ealker.gkevtliersekilnkllDeeiakiveeelekkeielrlneevksvegeekvevltsgkvyqaDlvilavGvkPnselikssqlk..lgkkGaikvnekfqts.veniyaiGDvaeskni 288
                 k+vi+Gg+ aG +a  ++   + ++++++++ +++  +++  l  fv+       + l + +  +  +++  v+      +v +e + v+v  + ++++ +  yD+L+l+ G   + + i+ + ++ +   r     +a  + l  +++++v+++G+G +g+e++ e l++r  + vt+++ +  +  + +D+   +  ++ l++++ ++ l  +v+++ +  +  +l+ g++ +aD+v   vGv Pn+e++  s l+   g + a++vn+++q +  +n++ +GD++    +
  MMETSP1137-20121227|8320_1  84 KVVIIGGSFAGLAALRELA-GHAQLEVTLVDLKDYFEYTPGILRCFVDA-----SY-LRHLTCALPARRNAFVHGSLG--AVSTEIESVSVIGR-DGREVNLPYDYLVLAVGSTYQEP-IKPVVAEPTLQERSASWRQAA-SRL--SEAKSVIIVGAGAVGVELAaEILESRpEMTVTFVDFAAAV-LPGFDRKACEFATQWLKQRGAKMMLGVQVETIGESSV--TLKGGQTVSADIVYKCVGVLPNTEMLAASSLAksFGFRNAVQVNDHLQVDgLPNVFCVGDMMSHSSR 359
                 6777888777776544443.35567777778778888877777777765.....22.233333344555555554443..44456666666655.45566778*********988776.555455554444443333333.333..78999************972566666347899********.899***************************9987776..9************************9999986337899**********8648********9876554 PP

>> TIGR02053  MerA: mercuric reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0       0.7   1.2e+02     165     182 ..      80      97 ..      39     119 .. 0.70
   2 !   54.5   0.1   1.2e-17   2.2e-15     124     335 ..     170     385 ..     152     404 .. 0.80

  Alignments for each domain:
  == domain 1    score: -0.8 bits;  conditional E-value: 0.7
   TIGR02053 165 kipeslvviGggaiavEl 182
                 +  +++v+iGg+  ++ +
  MMETSP1137-20121227|8320_1  80 QPAKKVVIIGGSFAGLAA 97 
                 344788888888777643 PP

  == domain 2    score: 54.5 bits;  conditional E-value: 1.2e-17
   TIGR02053 124 gkevvg.akrvliAtGarpavPeipGLkeaeyltseell....eldkipeslvviGggaiavElaq..lfarlGsevtllqrserllkeeepeisaaveellaeeGvevvksakvkavskrnggkklvtvekndskkeveadellvAtGRkpnvdgLnLekvgvklderGeilvdeklrts.npkiyAAGDvikg....lqlesvAakeGvvaAenalggaeak 335
                 g+ev   ++ +++A+G+  + P  p ++e +  + +  +    +     +s++++G+ga++vEla   l  r  + vt +  + ++l+  ++++ ++ ++ l++ G +++  ++v+++ ++      vt+++    ++v ad ++   G  pn++ L  + +   ++ r  ++v+++l+ +  p+++  GD++++    l+l + A  +G +aA+n++  ae+k
  MMETSP1137-20121227|8320_1 170 GREVNLpYDYLVLAVGSTYQEPIKPVVAEPTLQERSASWrqaaSRLSEAKSVIIVGAGAVGVELAAeiLESRPEMTVTFVDFAAAVLPGFDRKACEFATQWLKQRGAKMMLGVQVETIGES-----SVTLKG---GQTVSADIVYKCVGVLPNTEMLAASSLAKSFGFRNAVQVNDHLQVDgLPNVFCVGDMMSHssreLKLGHTAEVNGHLAAKNIIRMAEEK 385
                 66665415557789***999998888887775544444410003344569*************9863244688999*************************************88888764.....466666...699*****************************************9757*********98744446699***************988766 PP

>> TIGR02374  nitri_red_nirB: nitrite reductase [NAD(P)H], large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.0      0.14        25     134     170 ..      76     113 ..      47     133 .. 0.82
   2 !   47.2   0.1   1.4e-15   2.4e-13      85     303 ..     163     379 ..     149     389 .. 0.79

  Alignments for each domain:
  == domain 1    score: 0.8 bits;  conditional E-value: 0.14
   TIGR02374 134 eaaakrtkkaaviGgGLLGLeaaraLk.nlGldvsvie 170
                  a a+  kk ++iGg + GL a r L  +  l+v  ++
  MMETSP1137-20121227|8320_1  76 SANAQPAKKVVIIGGSFAGLAALRELAgHAQLEVTLVD 113
                 46799999************999988634556666665 PP

  == domain 2    score: 47.2 bits;  conditional E-value: 1.4e-15
   TIGR02374  85 ksvitdagr..tlsyDkLilatGsypfilPipGaDkkgvfvyrtieDldaleaaakrtkkaaviGgGLLGLeaaraLkn..lGldvsvielapllmakqlDqtagrlLqrelekkGltvlleketveivkesvekaerlrfkDGssleadlvvlaaGirPrdeLaaeaGlk..vndrrGiivndsmqts.dPdiyavGecaehngrvyGLvaPlyeqakvladhll 303
                  svi   gr   l+yD L+la Gs+ +  Pi+    +     r     +a    + + k  +++G+G +G+e a  + +    + v  +++a+ ++   +D+ a +   + l+++G +++l+ + + i ++s      + +k G+++ ad+v  ++G+ P++e+ a++ l+   + r  + vnd++q +  P+++ vG++ +h +r   L      +++ +a++++
  MMETSP1137-20121227|8320_1 163 VSVIGRDGRevNLPYDYLVLAVGST-YQEPIKPVVAEPTLQERSASWRQAASRLS-EAKSVIIVGAGAVGVELAAEILEsrPEMTVTFVDFAAAVLP-GFDRKACEFATQWLKQRGAKMMLGVQVETIGESS------VTLKGGQTVSADIVYKCVGVLPNTEMLAASSLAksFGFRNAVQVNDHLQVDgLPNVFCVGDMMSHSSRELKLGHTAEVNGHLAAKNII 379
                 55666655511468*********95.89999987777777777777666655554.3566699*********666554412579999******9986.69**********************9976665555......99***********************98888886336789**********9836************99877776666666666666665 PP

>> TIGR03452  mycothione_red: mycothione reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       3.1   5.5e+02     112     142 ..      62      92 ..      59      98 .. 0.74
   2 !   37.7   0.0   1.4e-12   2.5e-10     130     344 ..     175     395 ..     159     418 .. 0.73

  Alignments for each domain:
  == domain 1    score: -3.0 bits;  conditional E-value: 3.1
   TIGR03452 112 sharfvgrktlrtedgeeitadqvviaaGsr 142
                 +har v  k+l+  +++   a++vvi  Gs 
  MMETSP1137-20121227|8320_1  62 AHARDVMLKMLKLRSANAQPAKKVVIIGGSF 92 
                 5777777788888888888888888888875 PP

  == domain 2    score: 37.7 bits;  conditional E-value: 1.4e-12
   TIGR03452 130 itadqvviaaGsr..pvipeaiaesgvryytn...edimrlpelpeslvivGgGyialefah.vfsal.Gtkvtlvarsekllrkldediserftelakkkfdvrlgrnvtaaeqdddg.vtlelddGstveadvllvatGrvpngdlldaeaaGvevdedgrvkvdey.qrtsaegvfalGdvss....pyqlkhvanaearvvkhnllkdedlkkadhdfvpaavf 344
                 +  d +v+a Gs     i++++ae   + +++   +   rl+e  +s++ivG+G + +e+a+ ++++   ++vt v  + ++l   d + +e  t+     ++ r  + + +++ +  g  +++l  G+tv+ad++   +G +pn+++l a++        + v+v+++ q     +vf +Gd+ s    + +l h a+ +    ++n+++ ++ k  +    p++v 
  MMETSP1137-20121227|8320_1 175 LPYDYLVLAVGSTyqEPIKPVVAEPTLQERSAswrQAASRLSE-AKSVIIVGAGAVGVELAAeILESRpEMTVTFVDFAAAVLPGFDRKACEFATQW----LKQRGAKMMLGVQVETIGeSSVTLKGGQTVSADIVYKCVGVLPNTEMLAASSLAKSFGFRNAVQVNDHlQVDGLPNVFCVGDMMShssrELKLGHTAEVNGHLAAKNIIRMAEEK--PLLEYPSGVV 395
                 5567889999985224588999998888776522256778887.589************9753777652689***************9998755544....4445555556666555555678899*************************9999888888999997761668899*******865222257888999999999999988764322..2223344443 PP

>> TIGR01424  gluta_reduc_2: glutathione-disulfide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.3   0.0   1.2e-11   2.1e-09     132     303 ..     178     354 ..     151     362 .. 0.79

  Alignments for each domain:
  == domain 1    score: 34.3 bits;  conditional E-value: 1.2e-11
   TIGR01424 132 ekiliavGgr...pvkpelPG...aelaitsdeafdletlPksilvvGgGyiavefa.gifrGl.GvkvtllyrgekilrgfdddvraelaeeleerGirillktvlksiekvddGlkvtlskdeeivadvvllatGrvPnvkglgleaaGvelndagaiavdeysrts.vpsiyavGdvt 303
                 + +++avG+    p+kp++     +e + +  +a +  +  ks+++vG+G ++ve+a +i++    ++vt +   + +l gfd +     ++ l++rG +++l   +++i +      vtl  ++++ ad+v   +G  Pn++ l+  +   +   ++a++v+++ + +  p+++ vGd+ 
  MMETSP1137-20121227|8320_1 178 DYLVLAVGSTyqePIKPVVAEptlQERSASWRQAASRLSEAKSVIIVGAGAVGVELAaEILESRpEMTVTFVDFAAAVLPGFDRKACEFATQWLKQRGAKMMLGVQVETIGES----SVTLKGGQTVSADIVYKCVGVLPNTEMLAASSLAKSFGFRNAVQVNDHLQVDgLPNVFCVGDMM 354
                 556677776411144555433111233344445555566789*************97257776525778888999****************************9988888654....57888999**************************************99997548********75 PP

>> TIGR01423  trypano_reduc: trypanothione-disulfide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.9   0.0       4.3   7.7e+02       5      36 ..      84     115 ..      82     118 .. 0.82
   2 !   27.6   0.0   1.2e-09   2.1e-07     181     328 ..     213     354 ..     166     362 .. 0.80

  Alignments for each domain:
  == domain 1    score: -3.9 bits;  conditional E-value: 4.3
   TIGR01423   5 dlvvigagsggleagwnaaslykkrvavvdlq 36 
                  +v+ig    gl a  + a   +  v++vdl+
  MMETSP1137-20121227|8320_1  84 KVVIIGGSFAGLAALRELAGHAQLEVTLVDLK 115
                 57899999999999999999889999999987 PP

  == domain 2    score: 27.6 bits;  conditional E-value: 1.2e-09
   TIGR01423 181 fyleeapkrvltvgggyisvefagifnaykavggkvdlayrndmilrgfdselrkeltkqlvangidvrtnenpakveknadgskhvvfesgkeldvdvvmlaigrlprsqtlqldkvgveladkgaikvdeysktn.vdniyaigdvt 328
                   l e  k v++vg g + ve+a  +   ++    v+++  +  +l gfd +  +  t+ l+  g +++       v+ ++ g   v+++ g+++  d+v  ++g lp +++l           + a++v+++ + + ++n++++gd+ 
  MMETSP1137-20121227|8320_1 213 SRLSE-AKSVIIVGAGAVGVELAAEILESRPE-MTVTFVDFAAAVLPGFDRKACEFATQWLKQRGAKMMLG-----VQVETIGESSVTLKGGQTVSADIVYKCVGVLPNTEMLAASSLAKSFGFRNAVQVNDHLQVDgLPNVFCVGDMM 354
                 33444.5889************9866666665.4699999999***********************99975.....6777889999********************************************888776439********86 PP

>> TIGR01438  TGR: thioredoxin and glutathione reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.0       0.3        53       5      33 ..      85     114 ..      82     123 .. 0.80
   2 !   25.8   0.0   5.5e-09   9.8e-07     184     346 ..     221     382 ..     174     401 .. 0.78

  Alignments for each domain:
  == domain 1    score: 0.3 bits;  conditional E-value: 0.3
   TIGR01438   5 liviGgGsGGlaaakeaaklga.kvllldf 33 
                 +++iGg   Glaa +e a + + +v l+d 
  MMETSP1137-20121227|8320_1  85 VVIIGGSFAGLAALRELAGHAQlEVTLVDL 114
                 68999999*******998876437877774 PP

  == domain 2    score: 25.8 bits;  conditional E-value: 5.5e-09
   TIGR01438 184 tlvvGasyvalecaG.flaal.gldvt.vlvrsillrGfdqdcavkvkeylkeqGvkfkeqvlpkkvekveakvlvkftdkdntieeeydtvlyaiGrkadlkklnlenvgvkvnkksgkiladelertnvpsiyavGdivedk...leltpvaikaGklladrlfkds 346
                  ++vGa+ v +e a   l++  ++ vt v   + +l Gfd++  ++ +++lk++G k+  +v++   e +++  +      ++  +   d v   +G  ++++ l   +++     +++  + d+l+   +p+++ vGd++ +    l+l   a   G+l a+ + + +
  MMETSP1137-20121227|8320_1 221 VIIVGAGAVGVELAAeILESRpEMTVTfVDFAAAVLPGFDRKACEFATQWLKQRGAKMMLGVQV---ETIGESSVTLKG--GQ--TVSADIVYKCVGVLPNTEMLAASSLAKSFGFRNAVQVNDHLQVDGLPNVFCVGDMMSHSsreLKLGHTAEVNGHLAAKNIIRMA 382
                 689*********87624554313445423357899*********************99877765...555554333222..23..3456899999********************************************997541113456677777777777666555 PP

>> TIGR01988  Ubi-OHases: ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.9   0.0   0.00074      0.13       2      33 ..      85     116 ..      84     133 .. 0.91
   2 !   12.5   0.0   5.6e-05      0.01       2      34 ..     221     254 ..     220     280 .. 0.81

  Alignments for each domain:
  == domain 1    score: 8.9 bits;  conditional E-value: 0.00074
   TIGR01988   2 ivIvGgGlvGlalAlaLassadlkvalveaka 33 
                 +vI+Gg  +Gla   +La +a+l+v+lv+ k+
  MMETSP1137-20121227|8320_1  85 VVIIGGSFAGLAALRELAGHAQLEVTLVDLKD 116
                 8***************************9876 PP

  == domain 2    score: 12.5 bits;  conditional E-value: 5.6e-05
   TIGR01988   2 ivIvGgGlvGlalAlaLassa.dlkvalveakaa 34 
                 ++IvG+G vG  lA+++ +s  ++ v++v+ +aa
  MMETSP1137-20121227|8320_1 221 VIIVGAGAVGVELAAEILESRpEMTVTFVDFAAA 254
                 8**************98877779*****998754 PP

>> TIGR01421  gluta_reduc_1: glutathione-disulfide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       3.9   6.9e+02       5      24 ..      85     104 ..      83     115 .. 0.71
   2 !   22.1   0.0   9.2e-08   1.6e-05     166     307 ..     218     356 ..     155     388 .. 0.83

  Alignments for each domain:
  == domain 1    score: -3.0 bits;  conditional E-value: 3.9
   TIGR01421   5 ylviGGGsGGiasarraaey 24 
                 +++iGG   G+a+ r  a +
  MMETSP1137-20121227|8320_1  85 VVIIGGSFAGLAALRELAGH 104
                 57889989999999876655 PP

  == domain 2    score: 22.1 bits;  conditional E-value: 9.2e-08
   TIGR01421 166 PkrvvivGaGyiavelaG.vlhglGsktdlvir.rervlrsfdelisekvveelekaglevhklskvvkvektvegklvitledgkeiedvdeliwaiGrkpntkdlglekvgvkldekgyikv.deyqntnvegiyalGdvvGk 307
                  k+v+ivGaG ++vela  +l++    t  ++     vl +fd    e  ++ l++ g ++    +v        g+  +tl+ g ++ ++d +  ++G  pnt+ l+   +  +   ++ ++v d+ q    ++++++Gd++ +
  MMETSP1137-20121227|8320_1 218 AKSVIIVGAGAVGVELAAeILESRPEMTVTFVDfAAAVLPGFDRKACEFATQWLKQRGAKMMLGVQVET-----IGESSVTLKGG-QTVSADIVYKCVGVLPNTEMLAASSLAKSFGFRNAVQVnDHLQVDGLPNVFCVGDMMSH 356
                 5899************8538888888887777526789*******************988765544433.....34557788888.7788999999***************************956679999*********9865 PP

>> TIGR02964  xanthine_xdhC: xanthine dehydrogenase accessory protein XdhC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   0.0     0.023       4.1      83     133 ..      62     116 ..      49     140 .. 0.74
   2 !   14.2   0.0   2.9e-05    0.0052      92     138 ..     210     258 ..     193     288 .. 0.78

  Alignments for each domain:
  == domain 1    score: 4.7 bits;  conditional E-value: 0.023
   TIGR02964  83 aeeadtleeevkaea...aaaaevvlfGaGHvgkalvrvlaklp.vrvtlvdsre 133
                 a+++d + +  k +    ++a++vv+ G    g a  r la +  ++vtlvd ++
  MMETSP1137-20121227|8320_1  62 AHARDVMLKMLKLRSanaQPAKKVVIIGGSFAGLAALRELAGHAqLEVTLVDLKD 116
                 444444444433332444999************999888886655*******875 PP

  == domain 2    score: 14.2 bits;  conditional E-value: 2.9e-05
   TIGR02964  92 evkaeaaaaaevvlfGaGHvgkalv.rvlaklp.vrvtlvdsreeelpe 138
                 +++++ ++a++v++ GaG vg +l+ ++l++ p ++vt+vd  ++ lp 
  MMETSP1137-20121227|8320_1 210 QAASRLSEAKSVIIVGAGAVGVELAaEILESRPeMTVTFVDFAAAVLPG 258
                 3344558899**************7368999988********9999975 PP

>> TIGR04018  Bthiol_YpdA: putative bacillithiol system oxidoreductase, YpdA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.0      0.41        74     153     182 ..      83     113 ..      75     121 .. 0.65
   2 !   16.6   0.1   3.2e-06   0.00057     153     290 ..     219     355 ..     179     383 .. 0.79

  Alignments for each domain:
  == domain 1    score: -0.2 bits;  conditional E-value: 0.41
   TIGR04018 153 qkvvvvGgknsavdaalely.rkgaevtlvv 182
                 +kvv++Gg+ +   a  el  ++  evtlv 
  MMETSP1137-20121227|8320_1  83 KKVVIIGGSFAGLAALRELAgHAQLEVTLVD 113
                 6778888877777666666523344677665 PP

  == domain 2    score: 16.6 bits;  conditional E-value: 3.2e-06
   TIGR04018 153 qkvvvvGgknsavdaalely..rkgaevtlvvrgeelsekvkyWvkpdlenrikegkikalfesevkeieeesvtletpegeveeiendfvlaltGyrpdlelleklgveleede.kipvydeetmEtnveglylaGvvaa 290
                 ++v++vG+    v+ a e+   r + +vt+v   +++            ++ +k++  k+++  +v++i e+svtl+   g++  +++d v   +G  p++e+l++  ++ +    ++ +++++     +++++ +G +++
  MMETSP1137-20121227|8320_1 219 KSVIIVGAGAVGVELAAEILesRPEMTVTFVDFAAAVLPGFDRKACEFATQWLKQRGAKMMLGVQVETIGESSVTLKG--GQT--VSADIVYKCVGVLPNTEMLAASSLAKSFGFrNAVQVNDHLQVDGLPNVFCVGDMMS 355
                 679*************9997124566688888888888888888777778899***********************98..555..99******************999987766524444555555566888888887665 PP

>> TIGR01292  TRX_reduct: thioredoxin-disulfide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0      0.76   1.4e+02       2      15 ..      84      97 ..      83     116 .. 0.82
   2 ?    1.7   0.1      0.11        20       2      28 ..     220     248 ..     219     255 .. 0.74
   3 !   13.4   0.0     3e-05    0.0054     219     298 ..     294     380 ..     269     382 .. 0.76

  Alignments for each domain:
  == domain 1    score: -1.0 bits;  conditional E-value: 0.76
   TIGR01292  2 dviiiGaGpaGlta 15
                +v+iiG+  aGl+a
  MMETSP1137-20121227|8320_1 84 KVVIIGGSFAGLAA 97
                799********988 PP

  == domain 2    score: 1.7 bits;  conditional E-value: 0.11
   TIGR01292   2 dviiiGaGpaG..ltaaiYaaranlktll 28 
                  vii+GaG+ G  l+a i  +r ++++ +
  MMETSP1137-20121227|8320_1 220 SVIIVGAGAVGveLAAEILESRPEMTVTF 248
                 69********9444677888887776655 PP

  == domain 3    score: 13.4 bits;  conditional E-value: 3e-05
   TIGR01292 219 tkeeeelkvdgvFiaiGhepntellkel...leldeegyivvdee.mrTsveGvfaaGDvrdkslrQv...vtaagdGaiAalsvek 298
                  k  +++++d v+  +G+ pnte+l+ +    +   ++ ++v+++ +   ++ vf +GD++++s r +    ta  +G +Aa ++ +
  MMETSP1137-20121227|8320_1 294 LKGGQTVSADIVYKCVGVLPNTEMLAASslaKSFGFRNAVQVNDHlQVDGLPNVFCVGDMMSHSSRELklgHTAEVNGHLAAKNIIR 380
                 455678999*****************995333334456788888845567999********99776652226899999999998865 PP

>> TIGR01984  UbiH: 2-polyprenyl-6-methoxyphenol 4-hydroxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.0     0.011         2       1      33 [.      84     116 ..      84     124 .. 0.91
   2 !    8.0   0.0    0.0014      0.24       2      49 ..     221     267 ..     220     296 .. 0.83

  Alignments for each domain:
  == domain 1    score: 5.0 bits;  conditional E-value: 0.011
   TIGR01984   1 dviivGgglvGlslAlaLsrksklkialieaks 33 
                 +v+i+Gg+ +Gl+    L+ +++l+++l++ k+
  MMETSP1137-20121227|8320_1  84 KVVIIGGSFAGLAALRELAGHAQLEVTLVDLKD 116
                 59***************************9876 PP

  == domain 2    score: 8.0 bits;  conditional E-value: 0.0014
   TIGR01984   2 viivGgglvGlslAlaLsrks.klkialieaksaeaakssfdarslals 49 
                 viivG+g vG+ lA  + +   ++ ++ ++  +a  +  +fd +++ ++
  MMETSP1137-20121227|8320_1 221 VIIVGAGAVGVELAAEILESRpEMTVTFVDFAAAVLP--GFDRKACEFA 267
                 9************998766666999999998777666..8888877665 PP

>> TIGR03467  HpnE: squalene-associated FAD-dependent desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.0   0.0   0.00047     0.083       1      28 [.      85     113 ..      85     133 .. 0.85
   2 ?   -0.9   0.4      0.97   1.7e+02       1      21 [.     221     241 ..     221     255 .. 0.73
   3 ?    4.0   0.0     0.031       5.5     213     257 ..     266     305 ..     261     348 .. 0.71

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 0.00047
   TIGR03467   1 vvvvGgGlAGLaAAveLaraG.vrvtllE 28 
                 vv++Gg +AGLaA  eLa +  ++vtl++
  MMETSP1137-20121227|8320_1  85 VVIIGGSFAGLAALRELAGHAqLEVTLVD 113
                 89***************987547888876 PP

  == domain 2    score: -0.9 bits;  conditional E-value: 0.97
   TIGR03467   1 vvvvGgGlAGLaAAveLaraG 21 
                 v++vG+G  G+  A+e+ +  
  MMETSP1137-20121227|8320_1 221 VIIVGAGAVGVELAAEILESR 241
                 89********98888876654 PP

  == domain 3    score: 4.0 bits;  conditional E-value: 0.031
   TIGR03467 213 paarylesrggevrlgtrvreleasaggiralveaaeetlaadav 257
                  a ++l++rg+++ lg++v+++     ++++  + +++t+ ad v
  MMETSP1137-20121227|8320_1 266 FATQWLKQRGAKMMLGVQVETIGE--SSVTL--K-GGQTVSADIV 305
                 5899***************99853..33333..3.6666666655 PP

>> TIGR03140  AhpF: alkyl hydroperoxide reductase, F subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.0      0.03       5.4     352     385 ..      82     116 ..      80     121 .. 0.88
   2 !    7.8   0.3    0.0013      0.22     351     493 ..     217     360 ..     211     380 .. 0.72

  Alignments for each domain:
  == domain 1    score: 3.2 bits;  conditional E-value: 0.03
   TIGR03140 352 gkkvaviGGGnsGieaaidlaGive.hvtvlefad 385
                 +kkv +iGG  +G+ a  +laG  + +vt+++ +d
  MMETSP1137-20121227|8320_1  82 AKKVVIIGGSFAGLAALRELAGHAQlEVTLVDLKD 116
                 69********************8875899998877 PP

  == domain 2    score: 7.8 bits;  conditional E-value: 0.0013
   TIGR03140 351 kgkkvaviGGGnsGieaaidlaGivehvtvlefadelkadkvl..veklkslsnvdiltsaktkeivgdgdkvtglkykdrsseeekkleldGvfvqiGlvpnteflkdavelnrrG...eividergrts.vkGifaaGdvttvpykq 493
                 ++k+v ++G G  G+e a ++     ++tv  f+d   a +vl   ++ +     + l +  +k ++g   +v+++  +  + +  ++++ d v+  +G++pnte+l  +   +++G    + ++ + + + ++ +f  Gd+ +   + 
  MMETSP1137-20121227|8320_1 217 EAKSVIIVGAGAVGVELAAEILESRPEMTV-TFVDF--AAAVLpgFDRKACEFATQWLKQRGAKMMLGV--QVETIGESSVTLKGGQTVSADIVYKCVGVLPNTEMLAASSLAKSFGfrnAVQVNDHLQVDgLPNVFCVGDMMSHSSRE 360
                 689999999999999999988777666665.35554..3345511344444444455555555555555..9***********************************998777777643357777776665368899999987766555 PP

>> TIGR01790  carotene-cycl: lycopene cyclase family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.0     0.038       6.8       2      30 ..      85     114 ..      84     123 .. 0.89
   2 !    5.5   0.1    0.0093       1.7       2      30 ..     221     251 ..     220     261 .. 0.87
   3 ?    3.4   0.0     0.041       7.2     106     156 ..     279     332 ..     259     345 .. 0.68

  Alignments for each domain:
  == domain 1    score: 3.5 bits;  conditional E-value: 0.038
   TIGR01790   2 liviGgGlAglaiAlela.kpglrvqliea 30 
                 +++iGg  Agla   ela +++l+v l++ 
  MMETSP1137-20121227|8320_1  85 VVIIGGSFAGLAALRELAgHAQLEVTLVDL 114
                 79************************9985 PP

  == domain 2    score: 5.5 bits;  conditional E-value: 0.0093
   TIGR01790   2 liviGgGlAglaiAlela..kpglrvqliea 30 
                 +i++G+G  g+ +A+e+   +p++ v  ++ 
  MMETSP1137-20121227|8320_1 221 VIIVGAGAVGVELAAEILesRPEMTVTFVDF 251
                 79**************9878******99985 PP

  == domain 3    score: 3.4 bits;  conditional E-value: 0.041
   TIGR01790 106 aikveadavslslvecaggqriqarlVidargfka...lvqyekaslavgfQaa 156
                  + v+ ++  +s v+ +ggq+++a +V  + g  +   ++  ++ ++  gf  a
  MMETSP1137-20121227|8320_1 279 MLGVQVETIGESSVTLKGGQTVSADIVYKCVGVLPnteMLAASSLAKSFGFRNA 332
                 34567777788899999***************9885555555555555555555 PP

>> TIGR01789  lycopene_cycl: lycopene cyclase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.9   0.0       6.8   1.2e+03       2      17 ..      85      99 ..      72     112 .. 0.60
   2 ?    5.4   0.1      0.01       1.8       2      35 ..     221     254 ..     220     261 .. 0.89
   3 !    6.2   0.0    0.0056         1      90     142 ..     265     317 ..     258     328 .. 0.88

  Alignments for each domain:
  == domain 1    score: -3.9 bits;  conditional E-value: 6.8
   TIGR01789  2 vivvGgGlagglialr 17
                v+++Gg +a gl alr
  MMETSP1137-20121227|8320_1 85 VVIIGGSFA-GLAALR 99
                455555554.455555 PP

  == domain 2    score: 5.4 bits;  conditional E-value: 0.01
   TIGR01789   2 vivvGgGlagglialrlqdarPdlrilvieaaas 35 
                 vi+vG+G  g  +a  + ++rP++ +  ++ aa+
  MMETSP1137-20121227|8320_1 221 VIIVGAGAVGVELAAEILESRPEMTVTFVDFAAA 254
                 89************************99986654 PP

  == domain 3    score: 6.2 bits;  conditional E-value: 0.0056
   TIGR01789  90 rlreeleqklpervlldrkavevdadavdlengrvisasavidargfkPsaal 142
                 +++ +  ++ + +++l+ ++  +   +v+l++g+++sa  v  + g  P++++
  MMETSP1137-20121227|8320_1 265 EFATQWLKQRGAKMMLGVQVETIGESSVTLKGGQTVSADIVYKCVGVLPNTEM 317
                 5677777788899999*********************************9875 PP

>> TIGR01316  gltA: glutamate synthase (NADPH), homotetrameric
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.0     0.093        17     132     154 ..      81     103 ..      61     115 .. 0.74
   2 ?    3.8   0.2     0.025       4.5     269     302 ..     215     248 ..     204     296 .. 0.72
   3 ?    4.9   0.0     0.011         2     372     432 ..     298     361 ..     276     380 .. 0.74

  Alignments for each domain:
  == domain 1    score: 1.9 bits;  conditional E-value: 0.093
   TIGR01316 132 tkkkvaviGaGpaGlavaselak 154
                   kkv +iG   aGla   ela 
  MMETSP1137-20121227|8320_1  81 PAKKVVIIGGSFAGLAALRELAG 103
                 45788888888888888888874 PP

  == domain 2    score: 3.8 bits;  conditional E-value: 0.025
   TIGR01316 269 vevgkkvvviGgGntavdaartalrlGaevhvvy 302
                 +  +k+v+++G+G + v+ a   l    e++v +
  MMETSP1137-20121227|8320_1 215 LSEAKSVIIVGAGAVGVELAAEILESRPEMTVTF 248
                 5678999999999999998887776666666554 PP

  == domain 3    score: 4.9 bits;  conditional E-value: 0.011
   TIGR01316 372 vkleadavivaiGqeankiiaedsslkts..krGtivvdedlet.sieGvfaGGdvirGeatvi 432
                  ++ ad v   +G  +n  +   ssl+ s   r +++v+++l+   ++ vf  Gd++  +++ +
  MMETSP1137-20121227|8320_1 298 QTVSADIVYKCVGVLPNTEMLAASSLAKSfgFRNAVQVNDHLQVdGLPNVFCVGDMMSHSSREL 361
                 5789**************9999999987733578999999877626**********98777654 PP

>> TIGR01317  GOGAT_sm_gam: glutamate synthase, NADH/NADPH, small subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   0.2     0.012       2.1     136     176 ..      75     116 ..      70     250 .. 0.86
   2 ?    3.2   0.0     0.038       6.7     398     455 ..     297     355 ..     256     378 .. 0.77

  Alignments for each domain:
  == domain 1    score: 4.9 bits;  conditional E-value: 0.012
   TIGR01317 136 rppkkrtGkkvavvGsGPaGlaaadqln.raGhtvtvfered 176
                 r ++ +  kkv ++G   aGlaa  +l+ +a  +vt+ + +d
  MMETSP1137-20121227|8320_1  75 RSANAQPAKKVVIIGGSFAGLAALRELAgHAQLEVTLVDLKD 116
                 5667788899************99988534555677766655 PP

  == domain 2    score: 3.2 bits;  conditional E-value: 0.038
   TIGR01317 398 eevleadlvllalGfv.gpeqallddlgvdkdergnikaeldesetsidGvfaaGdarr 455
                  +++ ad+v+ ++G   ++e    ++l   +  r+ ++ +++ +   ++ vf++Gd+  
  MMETSP1137-20121227|8320_1 297 GQTVSADIVYKCVGVLpNTEMLAASSLAKSFGFRNAVQVNDHLQVDGLPNVFCVGDMMS 355
                 467799********761334444555555667899997777777778888******965 PP

>> TIGR00562  proto_IX_ox: protoporphyrinogen oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   0.0    0.0035      0.62       2      37 ..      82     116 ..      81     118 .. 0.88
   2 ?    1.6   0.1     0.097        17       3      33 ..     219     249 ..     217     255 .. 0.87

  Alignments for each domain:
  == domain 1    score: 6.4 bits;  conditional E-value: 0.0035
   TIGR00562   2 kkkvvvvGgGisGLciayalekerpdvelvlvEakd 37 
                  kkvv++Gg  +GL++   l+ +  ++e++lv+ kd
  MMETSP1137-20121227|8320_1  82 AKKVVIIGGSFAGLAALRELAGH-AQLEVTLVDLKD 116
                 689*************9999987.899999998765 PP

  == domain 2    score: 1.6 bits;  conditional E-value: 0.097
   TIGR00562   3 kkvvvvGgGisGLciayalekerpdvelvlv 33 
                 k v++vG+G  G+ +a  +   rp++ ++ v
  MMETSP1137-20121227|8320_1 219 KSVIIVGAGAVGVELAAEILESRPEMTVTFV 249
                 789***********99999999999888876 PP

>> TIGR03364  HpnW_proposed: FAD dependent oxidoreductase TIGR03364
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.0      0.19        34     193     255 ..      45     109 ..      36     119 .. 0.77
   2 ?    3.6   1.1     0.036       6.3       2      20 ..     220     238 ..     219     255 .. 0.81
   3 ?    4.5   0.0     0.018       3.3     145     195 ..     261     311 ..     259     326 .. 0.87

  Alignments for each domain:
  == domain 1    score: 1.2 bits;  conditional E-value: 0.19
   TIGR03364 193 sgadfetLfpelfaas..evrrckLqMlrvapqaelelgaalltglslvrYeaFaelpaaaalka 255
                 s ad+  L  e +a++  + r + L+Ml+++  +  + ++ ++ g s++  +a  el   a+l+ 
  MMETSP1137-20121227|8320_1  45 SAADIVLLAVEGMARMsaHARDVMLKMLKLRSANAQPAKKVVIIGGSFAGLAALRELAGHAQLEV 109
                 56666677777666651146789999999999999999999999999998888888888777765 PP

  == domain 2    score: 3.6 bits;  conditional E-value: 0.036
   TIGR03364   2 dvvvvGaGivGlahAlaaa 20 
                 +v++vGaG vG+  A++  
  MMETSP1137-20121227|8320_1 220 SVIIVGAGAVGVELAAEIL 238
                 69**********9998765 PP

  == domain 3    score: 4.5 bits;  conditional E-value: 0.018
   TIGR03364 145 reaipalaeyLaeekgveflwntavtevetstvrtsrGevh.aeqvlVcsga 195
                 r+a    +++L+++ g +++++ +v+ + +s v+ + G+++ a+ v  c+g 
  MMETSP1137-20121227|8320_1 261 RKACEFATQWLKQR-GAKMMLGVQVETIGESSVTLKGGQTVsADIVYKCVGV 311
                 677777899**999.99**********************9999999999995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (475 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       232  (0.0565578); expected 82.0 (0.02)
Passed bias filter:                      181  (0.0441248); expected 82.0 (0.02)
Passed Vit filter:                        48  (0.0117016); expected 4.1 (0.001)
Passed Fwd filter:                        23  (0.00560702); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              23  [number of targets reported over threshold]
# CPU time: 0.70u 0.19s 00:00:00.88 Elapsed: 00:00:00.93
# Mc/sec: 674.14
//
Query:       MMETSP1137-20121227|8321_1  [L=688]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        5.9    2.2  17.4        7.9    1.8  11.7    1.5  2  TIGR00927 2A1904: K+-dependent Na+/Ca+ exchanger


Domain annotation for each model (and alignments):
>> TIGR00927  2A1904: K+-dependent Na+/Ca+ exchanger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.1   0.0      0.11   4.7e+02     248     277 ..      40      72 ..      30     122 .. 0.75
   2 ?    1.8  11.7    0.0019       7.9     727     815 ..     284     374 ..     219     506 .. 0.65

  Alignments for each domain:
  == domain 1    score: -4.1 bits;  conditional E-value: 0.11
   TIGR00927 248 ptplkgvvdntrtfllk...eletdvltsprsv 277
                 p+ lkg++d+t  f+ +   e e+ +l   ++ 
  MMETSP1137-20121227|8321_1  40 PAELKGIIDKTAQFVARngpEFESRILKNEQNN 72 
                 889999999999999873334666666666555 PP

  == domain 2    score: 1.8 bits;  conditional E-value: 0.0019
   TIGR00927 727 tpapapedkgdqeedpgsqgdvaeaeak..gertgeeaeaeteaegekdeesggeaeqegeseekaeeeseGeieaerkgedegegeieak 815
                 +p     + g ++e  ++q+d+++ae +  +  t+  aea+  ae+e+ e +++e+ +++++e   ++e+    +a    ++++e+e+ea 
  MMETSP1137-20121227|8321_1 284 APQDLSATVGARNEAAAAQKDKEKAEREeeAAATQRRAEAAQAAEAEQAEIAEKEKIEKEQAERAEKAEKAAAQQAAPVAQQAEEAEVEAL 374
                 2333445567788888888877666554004456666777788888888888888888888887777788777888777888888887764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (688 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       366  (0.0892248); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.15s 00:00:00.69 Elapsed: 00:00:00.62
# Mc/sec: 1464.65
//
Query:       MMETSP1137-20121227|8322_1  [L=366]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0019   15.4   0.0     0.0027   14.9   0.0    1.3  1  TIGR03516 ppisom_GldI: peptidyl-prolyl isomerase, gliding motility-associated


Domain annotation for each model (and alignments):
>> TIGR03516  ppisom_GldI: peptidyl-prolyl isomerase, gliding motility-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   6.7e-07    0.0027     124     176 ..     219     270 ..     167     271 .. 0.84

  Alignments for each domain:
  == domain 1    score: 14.9 bits;  conditional E-value: 6.7e-07
   TIGR03516 124 lisGlrdglklmkegeevtfllPsykayGyyGdedkigsnlpikstvtllnik 176
                 +i G  +gl+lm+ g ++ + +P+  ayG     +ki +n  ++ +v ll++k
  MMETSP1137-20121227|8322_1 219 VIAGWNEGLQLMRPGGSARLTIPAPLAYGPR-ASEKIPANSVLQFKVDLLEVK 270
                 789**************************87.5789***********999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (366 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        98  (0.0238908); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.27u 0.13s 00:00:00.40 Elapsed: 00:00:00.44
# Mc/sec: 1097.91
//
Query:       MMETSP1137-20121227|8323_1  [L=331]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (331 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       107  (0.0260848); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.16s 00:00:00.41 Elapsed: 00:00:00.36
# Mc/sec: 1213.57
//
Query:       MMETSP1137-20121227|8324_1  [L=96]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (96 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       148  (0.03608); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                        32  (0.00780107); expected 4.1 (0.001)
Passed Fwd filter:                        20  (0.00487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.17s 00:00:00.53 Elapsed: 00:00:00.47
# Mc/sec: 269.59
//
Query:       MMETSP1137-20121227|8325_1  [L=141]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.015   12.1   0.2      0.018   11.9   0.1    1.1  1  TIGR03503 TIGR03503: TIGR03503 family protein


Domain annotation for each model (and alignments):
>> TIGR03503  TIGR03503: TIGR03503 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.1   4.3e-06     0.018     273     371 ..       6     121 ..       2     124 .. 0.49

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 4.3e-06
   TIGR03503 273 antefGkyrvklsvfatti.sgRelvlelpelsfnvvep..............leveptaeelaeeeaakvkeeqekalieereakkekeliiiivgnlvllll..vlvglivlrk 371
                 a  +fG  + k ++ ++++ +gR+  +++ +++ +v ++              ++  ++ e+  +e aa++k+ ++  + ++r+  ++++ + i++g l+ ++l  +++ +iv+ k
  MMETSP1137-20121227|8325_1   6 AVMAFGGSSGKEKASSSSTgDGRQGSVKIKQVQRQVDDVkqvmqenvevmlsnIDKTEVLENKSAELAAQAKTFHKSSREVKRHMCRQNAKMNILLGILCAVILlaIIIPVIVWAK 121
                 55666666666666665555677766666666666666555555555555433333333333333333333333333333333333333335556665543333248888999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (141 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       534  (0.13018); expected 82.0 (0.02)
Passed bias filter:                      301  (0.0733788); expected 82.0 (0.02)
Passed Vit filter:                        33  (0.00804486); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.22u 0.18s 00:00:00.40 Elapsed: 00:00:00.36
# Mc/sec: 516.96
//
Query:       MMETSP1137-20121227|8326_1  [L=244]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.8e-86  286.7   0.0    9.3e-86  286.5   0.0    1.0  1  TIGR01381 E1_like_apg7: E1-like protein-activating enzyme Gsa7p/Apg7p


Domain annotation for each model (and alignments):
>> TIGR01381  E1_like_apg7: E1-like protein-activating enzyme Gsa7p/Apg7p
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  286.5   0.0   2.3e-89   9.3e-86     430     660 ..       3     241 ..       1     243 [. 0.91

  Alignments for each domain:
  == domain 1    score: 286.5 bits;  conditional E-value: 2.3e-89
   TIGR01381 430 eekelledikrleelikehdvvfllldsrearWlPtvlcaradkiaisaalGfdsylvlrhGagrseessdveesdsvntsrlgCyfCndvvaPkdsttdrtldqqCtvtrPGvaliasalavellvsvlqhPlk..........sklpaslddnatvlGilPhqirGflsrfeqikleakafesCsaCseavlaeykergwkfvkdalneptyledltGltelkkeaevaeldfe...dfesd 660
                 e ++++ d+++l++likehdvvfll+d+re+rWlP++l+a   k+ai+aalGfds+lv+  G+ ++++  ++         rlgCyfCndvvaP +st  rtldqqCtv+rPG++++asa+avel+vs+l hP +           +  a  +  +++lG +Phq+rGfls f+   + ++af++C+aCs avl+ ++ +g++f++ a+n+ +yle+ltGl ++++eae a   +e   d+e+d
  MMETSP1137-20121227|8326_1   3 EIEQVKADVEKLHRLIKEHDVVFLLTDTRESRWLPSLLAAAERKLAITAALGFDSFLVMGXGVETADSGAEAAAPG-----RLGCYFCNDVVAPANSTLRRTLDQQCTVSRPGLSMLASAMAVELMVSLLHHPHGasaeadadveGRREAHAQATQSPLGLVPHQVRGFLSAFRSDCMVGRAFDKCTACSAAVLSAHEAQGFDFLLSAFNRAAYLEELTGLSQMHREAEAALESLEffgDDEAD 241
                 678999*****************************************************98888777777766555.....******************************************************8888888876666677778899*********************************************************************999887666411144444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (244 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       119  (0.0290102); expected 82.0 (0.02)
Passed bias filter:                      105  (0.0255973); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.26u 0.17s 00:00:00.43 Elapsed: 00:00:00.32
# Mc/sec: 1006.42
//
Query:       MMETSP1137-20121227|8328_1  [L=599]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00073   16.9   0.9     0.0015   15.8   0.6    1.5  1  TIGR00710 efflux_Bcr_CflA: drug resistance transporter, Bcr/CflA subfamily


Domain annotation for each model (and alignments):
>> TIGR00710  efflux_Bcr_CflA: drug resistance transporter, Bcr/CflA subfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.6   3.7e-07    0.0015     222     293 ..     327     398 ..     304     421 .. 0.88

  Alignments for each domain:
  == domain 1    score: 15.8 bits;  conditional E-value: 3.7e-07
   TIGR00710 222 lfaflsaapfvlidimgvspevfgllfalniialifgsfligrlvkkigaksllrialvllivsavllvlta 293
                  f+f sa  +v+  + ++s++  g+l+   ++  ++   l +r+ +++ +k ll +a  l ++s+v+++lt 
  MMETSP1137-20121227|8328_1 327 KFGFXSAMVVVYDKQFHFSVDAAGMLAGSCALSGLVSVALYRRFCRRVSGKRLLLMAEGLALASSVFMALTG 398
                 59******************************************************************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (599 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       166  (0.0404681); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.17s 00:00:00.57 Elapsed: 00:00:00.48
# Mc/sec: 1647.11
//
Query:       MMETSP1137-20121227|8329_1  [L=204]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (204 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       124  (0.0302292); expected 82.0 (0.02)
Passed bias filter:                      114  (0.0277913); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.14s 00:00:00.33 Elapsed: 00:00:00.34
# Mc/sec: 791.93
//
Query:       MMETSP1137-20121227|8330_1  [L=433]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (433 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        81  (0.0197465); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.14s 00:00:00.44 Elapsed: 00:00:00.45
# Mc/sec: 1270.03
//
Query:       MMETSP1137-20121227|8331_1  [L=56]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        46  (0.011214); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.16s 00:00:00.26 Elapsed: 00:00:00.27
# Mc/sec: 273.76
//
Query:       MMETSP1137-20121227|8332_1  [L=220]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (220 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        74  (0.01804); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.15s 00:00:00.37 Elapsed: 00:00:00.44
# Mc/sec: 659.95
//
Query:       MMETSP1137-20121227|8333_1  [L=407]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   5.3e-135  448.1   4.0   6.2e-135  447.8   2.7    1.0  1  TIGR01242 26Sp45: 26S proteasome subunit P45 family
    1.7e-89  298.9   6.3    9.8e-47  157.5   1.0    2.1  2  TIGR01243 CDC48: AAA family ATPase, CDC48 subfamily
    3.2e-81  271.4   0.6    4.5e-81  270.9   0.4    1.1  1  TIGR01241 FtsH_fam: ATP-dependent metallopeptidase HflB
    1.2e-58  196.9   1.6    1.6e-58  196.5   1.1    1.1  1  TIGR03689 pup_AAA: proteasome ATPase
    4.4e-08   30.2   1.2    0.00017   18.4   0.0    2.2  2  TIGR02928 TIGR02928: orc1/cdc6 family replication initiation protein
    6.2e-07   26.2   0.0    8.6e-07   25.7   0.0    1.3  1  TIGR03922 T7SS_EccA: type VII secretion AAA-ATPase EccA
    4.9e-06   23.6   0.0      1e-05   22.6   0.0    1.5  1  TIGR00635 ruvB: Holliday junction DNA helicase RuvB
      1e-05   22.5   0.1     0.0017   15.2   0.0    2.3  2  TIGR00390 hslU: ATP-dependent protease HslVU, ATPase subunit
    1.6e-05   21.9   0.1    2.6e-05   21.2   0.1    1.4  1  TIGR02881 spore_V_K: stage V sporulation protein K
    0.00014   18.9   0.0    0.00028   17.8   0.0    1.5  1  TIGR00382 clpX: ATP-dependent Clp protease, ATP-binding subunit ClpX
    0.00029   17.2   0.0    0.00062   16.1   0.0    1.5  1  TIGR00763 lon: ATP-dependent protease La
     0.0019   14.7   0.0      0.007   12.8   0.0    1.8  2  TIGR02902 spore_lonB: ATP-dependent protease LonB
     0.0022   15.4   0.0     0.0044   14.5   0.0    1.4  1  TIGR00678 holB: DNA polymerase III, delta' subunit
     0.0026   15.2   0.0     0.0062   13.9   0.0    1.6  1  TIGR02640 gas_vesic_GvpN: gas vesicle protein GvpN
     0.0039   13.6   0.0     0.0066   12.8   0.0    1.3  1  TIGR02903 spore_lon_C: ATP-dependent protease, Lon family
     0.0057   13.1   0.0      0.013   11.9   0.0    1.6  1  TIGR00368 TIGR00368: Mg chelatase-like protein
     0.0075   14.0   0.2          3    5.5   0.0    3.4  3  TIGR02237 recomb_radB: DNA repair and recombination protein RadB
  ------ inclusion threshold ------
      0.017   12.5   0.0      0.083   10.2   0.0    2.0  2  TIGR03420 DnaA_homol_Hda: DnaA regulatory inactivator Hda


Domain annotation for each model (and alignments):
>> TIGR01242  26Sp45: 26S proteasome subunit P45 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  447.8   2.7  2.7e-137  6.2e-135       3     364 .]      32     393 ..      30     393 .. 0.99

  Alignments for each domain:
  == domain 1    score: 447.8 bits;  conditional E-value: 2.7e-137
   TIGR01242   3 elkekirkledekkllekekirlereverlrselerlrsppllvavvvevlddervvvksstGpkfvvnvskfidrkelkpGarvalnqrtlaivdvlptekdplvkaleveerpevsyediGGlekqlreireavelplkkpelfeevGieppkGvllyGppGtGktllakavaeetnatfirvvgselvkkyiGeGarlvrevfklakekapsiifideidaiaakrldsstsGdrevqrtllqllaeldGfdprgnvkviaatnrldildpallrpGrfdrlievplpdleGrleilkihtrkmklaedvdleelaklteGasGadlkaivteaGmfaireerdkvtmedflkavekvl 364
                 el+  +r+   + + le+++ +l+ +v+ lr+el+ l++p   v+ vv+v++ ++v+vk     k+vv++ k id  +l+   rval + ++++  vlp++ dplv  +++e+ p+ +y+ iGG +kq++ei+e++elp+k+pelfe +Gi  pkGvl+yGppGtGktlla+ava++t+ t irv gselv+kyiGeG+r+vre+f +a+e apsiif+deid+i+ +rl+ +++Gd evqrt+l+ll +ldGf++ +++kvi atnrldild allrpGr+dr ie p p+++ rl+il ih+r+m+l+  +dl+++a   + asGa+ ka++teaGmfa+re+r +vt++df  av kv+
  MMETSP1137-20121227|8333_1  32 ELELIVREKTSNLRRLEAQRNELNSKVRLLREELSLLQEPGSYVGEVVKVMGRKKVLVKVHPEGKYVVDIDKTIDIAKLNTNDRVALRNDSYTLHLVLPSKVDPLVSLMKLEKVPDSTYDMIGGCDKQIKEIKEVIELPIKHPELFESLGIAQPKGVLMYGPPGTGKTLLARAVAHHTDCTXIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGGQRLEGESGGDSEVQRTMLELLNQLDGFEATNQIKVIMATNRLDILDSALLRPGRIDRKIEFPNPNEDARLDILSIHSRRMNLTRGIDLRKIAAQMNEASGAETKAVCTEAGMFALRERRVHVTQDDFEMAVAKVM 393
                 5666778888999***********************************************************************************************************************************************************************************************************************************************************************************************************************************************************97 PP

>> TIGR01243  CDC48: AAA family ATPase, CDC48 subfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  151.8   0.2   2.2e-47   5.1e-45     136     289 ..     105     262 ..      58     272 .. 0.80
   2 !  157.5   1.0   4.3e-49   9.8e-47     516     695 ..     214     395 ..     214     406 .. 0.93

  Alignments for each domain:
  == domain 1    score: 151.8 bits;  conditional E-value: 2.2e-47
   TIGR01243 136 lklvvvsttpagivrvteatevelkeea....veeeketkvpevtyedigglkeavkkirelvelplkhpelfeklgieppkgvllygppgtgktllakavaneagayfiaingpeimskyygeseerlreifkeaeenapsiifideidaiapkree 289
                 + +  ++t  +  +r  + t   + +      v+ +k  kvp+ ty+ igg ++++k i+e++elp+khpelfe lgi  pkgvl+ygppgtgktlla+ava  ++   i + g e++ ky+ge  + +re+f  a e apsiif+deid+i  +r e
  MMETSP1137-20121227|8333_1 105 IDIAKLNTNDRVALRNDSYTLHLVLPSKvdplVSLMKLEKVPDSTYDMIGGCDKQIKEIKEVIELPIKHPELFESLGIAQPKGVLMYGPPGTGKTLLARAVAHHTDCTXIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGGQRLE 262
                 555555666555555555554444433301125566667*****************************************************************************************************************999965 PP

  == domain 2    score: 157.5 bits;  conditional E-value: 4.3e-49
   TIGR01243 516 iavrgpeilskwvgesekaireifrkarqaapaiifldeidaiapar..gadlseavtdrivnqllteldgleensdvvviaatnrpdildpallrpgrldrlilvpapdeearleifkihtrslplaedvdleelakktegytgadieavvreaalaalresvksvakekleaeekeilkd 695
                 i v g e++ k++ge  + +re+f  ar+ ap+iif+deid+i  +r  g++ +++  +r + +ll +ldg+e ++++ vi atnr dild allrpgr+dr i  p p+e+arl+i+ ih+r+++l+  +dl+++a + +  +ga+ +av+ ea + alre    v+++ +e    +++k+
  MMETSP1137-20121227|8333_1 214 IRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGGQRleGESGGDSEVQRTMLELLNQLDGFEATNQIKVIMATNRLDILDSALLRPGRIDRKIEFPNPNEDARLDILSIHSRRMNLTRGIDLRKIAAQMNEASGAETKAVCTEAGMFALRERRVHVTQDDFEMAVAKVMKK 395
                 6799****************************************9996677888889999******************************************************************************************************99999999999886655554 PP

>> TIGR01241  FtsH_fam: ATP-dependent metallopeptidase HflB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  270.9   0.4     2e-83   4.5e-81      50     308 ..     145     404 ..     137     406 .. 0.97

  Alignments for each domain:
  == domain 1    score: 270.9 bits;  conditional E-value: 2e-83
   TIGR01241  50 kvkvtfkdvaGideakeelveivdf.LknpkkftklGakiPkGvllvGpPGtGktLlakavaGeagvpffsisGsdfvemfvGvGasrvrDlfeqakknaPciifiDeiDavGrkrgaglgggndereqtLnqlLvemDGfetnegvivlaatnrpdvLDkaLlrPGrfDrqvvvdkPdlkgreeilkvhakkvklaeevdlkkvarrtpGfsGadlanlvneaallaarknkkevtlkeleeavdrviaGlekksrvis 308
                  +  t++ + G+d++ +e++e+++  +k+p+ f++lG   PkGvl++GpPGtGktLla+ava   +   +++sGs++v+ ++G G+  vr+lf  a+++aP+iif+DeiD++G +r +g +gg +e+++t+  lL ++DGfe+++++ v+ atnr d+LD+aLlrPGr Dr++   +P+   r +il++h+++++l + +dl+k+a +   +sGa+ + ++ ea ++a r+++ +vt++++e av +v+   + k++ ++
  MMETSP1137-20121227|8333_1 145 VPDSTYDMIGGCDKQIKEIKEVIELpIKHPELFESLGIAQPKGVLMYGPPGTGKTLLARAVAHHTDCTXIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGGQRLEGESGGDSEVQRTMLELLNQLDGFEATNQIKVIMATNRLDILDSALLRPGRIDRKIEFPNPNEDARLDILSIHSRRMNLTRGIDLRKIAAQMNEASGAETKAVCTEAGMFALRERRVHVTQDDFEMAVAKVMKKDNEKNMSLK 404
                 55678999****************879******************************************************************************************************************************************************************************************************************************99999988765 PP

>> TIGR03689  pup_AAA: proteasome ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  196.5   1.1   6.9e-61   1.6e-58     100     401 ..      69     359 ..      12     397 .. 0.81

  Alignments for each domain:
  == domain 1    score: 196.5 bits;  conditional E-value: 6.9e-61
   TIGR03689 100 aldaervGeivtlkevlddgralvvdkadeervvklagalaeeklraGdsllvdlkaglaleavpkseveelv....leevPdvtyadiGGldsqieqirdavelPflhkelyreydlkpPkGvllyGPPGcGktliakavanslaekvaedgeaksyflnikGPellnkyvGeterqirliferarekaaegrPvvvffdemdslfrtr..G.sGvssdvettvvPqllaeldGveslenviviGasnredlidPailrPGrldvkirierPdaeaaadilakylte.dlPleedlaeadgdreaavea 401
                 + + + vGe+v   +v++++++lv  + + ++vv + +++  +kl++ d++++ +   + l+ v  s+v+ lv    le vPd ty+ iGG d+qi++i++ +elP +h+el++  ++  PkGvl+yGPPG+Gktl+a+ava           ++    + + G el++ky+Ge  r +r +f  are+a    P ++f+de+ds+   r  G sG  s+v+ t++  ll +ldG e+ + + vi a+nr d++d a+lrPGr+d ki    P+++a  dil+ +    +l    dl +   + ++a  a
  MMETSP1137-20121227|8333_1  69 QEPGSYVGEVV---KVMGRKKVLVKVHPEGKYVVDIDKTIDIAKLNTNDRVALRN-DSYTLHLVLPSKVDPLVslmkLEKVPDSTYDMIGGCDKQIKEIKEVIELPIKHPELFESLGIAQPKGVLMYGPPGTGKTLLARAVAH----------HTDCTXIRVSGSELVQKYIGEGSRMVRELFVMAREHA----PSIIFMDEIDSIGGQRleGeSGGDSEVQRTML-ELLNQLDGFEATNQIKVIMATNRLDILDSALLRPGRIDRKIEFPNPNEDARLDILSIHSRRmNLTRGIDLRKIAAQMNEASGA 359
                 34445566655...668899******************************99865.5699999999999998877779***************************************************************96..........4457789***************************987....99**********87772233566689998876.7******************************************************9875431333344555555544444444 PP

>> TIGR02928  TIGR02928: orc1/cdc6 family replication initiation protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.0   7.6e-07   0.00017      15      63 ..     151     208 ..     138     226 .. 0.72
   2 !   10.2   0.4   0.00023     0.053     127     280 ..     242     397 ..     229     405 .. 0.78

  Alignments for each domain:
  == domain 1    score: 18.4 bits;  conditional E-value: 7.6e-07
   TIGR02928  15 drivhRdeqieelakalkpilr.........gsrpsnvliyGktGtGKtavtkkvlke 63 
                 d i + d+qi+e+++ ++  ++           +p+ vl+yG++GtGKt+ +++v ++
  MMETSP1137-20121227|8333_1 151 DMIGGCDKQIKEIKEVIELPIKhpelfeslgIAQPKGVLMYGPPGTGKTLLARAVAHH 208
                 4777888888888877653333233333332579*******************99865 PP

  == domain 2    score: 10.2 bits;  conditional E-value: 0.00023
   TIGR02928 127 redsliivLDEiDklv.kkeade.........lLyeLsraeengdlekakvsvigisndlkfleeldervksslseeeivFppYdaeeLrdILeeRaekafkdgvlddeviplvaalaaqehGdaRkAidlLreageiAeeegsekvteehvekAqekiekerl 280
                 ++   ii +DEiD++  ++ + e         ++ eL+   +  ++   ++ vi  +n l++l++     +   ++++i+Fp+ +++   dIL+  ++   + +      ++++aa   + +G   kA+    eag  A +e + +vt+++ e+A  k+ k+  
  MMETSP1137-20121227|8333_1 242 EHAPSIIFMDEIDSIGgQRLEGEsggdsevqrTMLELLNQLDGFEAT-NQIKVIMATNRLDILDSAL--LRPGRIDRKIEFPNPNEDARLDILSIHSR---RMNLTRGIDLRKIAAQMNEASGAETKAVC--TEAGMFALRERRVHVTQDDFEMAVAKVMKKDN 397
                 344457889****9965433333688889999677766665666666.79**********9998754..4566789*****************97766...556666667999***************85..6************************9966554 PP

>> TIGR03922  T7SS_EccA: type VII secretion AAA-ATPase EccA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.7   0.0   3.8e-09   8.6e-07     287     390 ..     159     259 ..     152     356 .. 0.73

  Alignments for each domain:
  == domain 1    score: 25.7 bits;  conditional E-value: 3.8e-09
   TIGR03922 287 qvaalkssvevalvRae..rGlavaqrskHlllaGPPGtGkttiArvvakiyaGlgvlrkpevrEvsRadligeyigeseaktnelidkaLg...gvlFlDEayaLvek 390
                 q++ +k+ +e+ +   e    l +a + k +l+ GPPGtGkt +Ar+va+           + + vs ++l+ +yige      el   a +    ++F+DE+ ++  +
  MMETSP1137-20121227|8333_1 159 QIKEIKEVIELPIKHPElfESLGIA-QPKGVLMYGPPGTGKTLLARAVAHHT-------DCTXIRVSGSELVQKYIGEGSRMVRELFVMAREhapSIIFMDEIDSIGGQ 259
                 5566666555555544322345555.4578999****************974.......3455679******************9987776522279*****9988655 PP

>> TIGR00635  ruvB: Holliday junction DNA helicase RuvB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.6   0.0   4.5e-08     1e-05      29      93 ..     184     256 ..     159     263 .. 0.65

  Alignments for each domain:
  == domain 1    score: 22.6 bits;  conditional E-value: 4.5e-08
   TIGR00635  29 aldhvllyGPPGlGkttlakiiakelgvk.lkitsgpalek....pgDlaailtal...eegdvlfiDeihrl 93 
                 +   vl+yGPPG Gkt la+ +a+  + + +++  +  ++k     + ++  l  +   ++ +++f+Dei  +
  MMETSP1137-20121227|8333_1 184 QPKGVLMYGPPGTGKTLLARAVAHHTDCTxIRVSGSELVQKyigeGSRMVRELFVMareHAPSIIFMDEIDSI 256
                 66789*******************9996515655555555532222445544433311144579999999776 PP

>> TIGR00390  hslU: ATP-dependent protease HslVU, ATPase subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0   7.4e-06    0.0017      46     101 ..     184     237 ..     181     243 .. 0.86
   2 !    5.1   0.1    0.0084       1.9     248     283 ..     245     279 ..     238     294 .. 0.75

  Alignments for each domain:
  == domain 1    score: 15.2 bits;  conditional E-value: 7.4e-06
   TIGR00390  46 vPknilmiGstGvGkteiarrlaklaeaPfikveatkftevGyvGrdveslvrdlv 101
                  Pk +lm G+ G Gkt +ar +a  ++   i+v  +   +  y+G     +vr+l 
  MMETSP1137-20121227|8333_1 184 QPKGVLMYGPPGTGKTLLARAVAHHTDCTXIRVSGSELVQ-KYIGEG-SRMVRELF 237
                 59*******************************9998876.588854.56888775 PP

  == domain 2    score: 5.1 bits;  conditional E-value: 0.0084
   TIGR00390 248 sGiifideidkiakkg..essgadvsreGvqrdllPiv 283
                   iif+deid i  +    +sg d     vqr +l ++
  MMETSP1137-20121227|8333_1 245 PSIIFMDEIDSIGGQRleGESGGD---SEVQRTMLELL 279
                 579*********988742234444...45899888775 PP

>> TIGR02881  spore_V_K: stage V sporulation protein K
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.1   1.2e-07   2.6e-05      44     188 ..     187     332 ..     151     398 .. 0.68

  Alignments for each domain:
  == domain 1    score: 21.2 bits;  conditional E-value: 1.2e-07
   TIGR02881  44 hmifkGnPGtGkttvarllaklfkelnvlskGhlieveradlvGeyiGhtaqktrevi...kkalGGvlfideaysla..r.....GGekdfGkeaidtlvk.emedkreelvlilaGysdemdyflslnPGlksrfpisldfpdytveelleiak 188
                  +++ G PGtGkt +ar +a+        +    i v  ++lv +yiG+ ++ +re+    ++    ++f+de  s+   r     GG+ +  +  ++ l + +  +  +++ +i+a  + ++     l PG   r+  +++fp+ + +  l+i+ 
  MMETSP1137-20121227|8333_1 187 GVLMYGPPGTGKTLLARAVAHH-------TDCTXIRVSGSELVQKYIGEGSRMVRELFvmaREHAPSIIFMDEIDSIGgqRlegesGGDSEVQRTMLELLNQlDGFEATNQIKVIMATNRLDILDSALLRPG---RIDRKIEFPNPNEDARLDILS 332
                 45678**************985.......45677899999****************86222445679******99984221222226666666666655544122355667777777766554444445565...677788888888877777764 PP

>> TIGR00382  clpX: ATP-dependent Clp protease, ATP-binding subunit ClpX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.0   1.2e-06   0.00028     120     196 ..     188     258 ..     177     281 .. 0.78

  Alignments for each domain:
  == domain 1    score: 17.8 bits;  conditional E-value: 1.2e-06
   TIGR00382 120 illiGptGsGktllaqtlakeldvpfaiadattlteaGyvGedvenillkllqaadydvekaekGiiyideidkiar 196
                 +l+ Gp G+Gktlla+++a++ d        + l +  y+Ge    ++ +l+  a    ++    ii++deid i  
  MMETSP1137-20121227|8333_1 188 VLMYGPPGTGKTLLARAVAHHTDCTXIRVSGSELVQ-KYIGEGSR-MVRELFVMA----REHAPSIIFMDEIDSIGG 258
                 7899*******************9876666666765.7****865.556666555....445578********9964 PP

>> TIGR00763  lon: ATP-dependent protease La
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0   2.7e-06   0.00062     356     434 ..     188     263 ..     175     284 .. 0.69

  Alignments for each domain:
  == domain 1    score: 16.1 bits;  conditional E-value: 2.7e-06
   TIGR00763 356 lclvGPPGVGKtSlaksiAkalnrkfvrlslGGlkDvaeikGHRrtYvGalPGkiiqgl.kkvktenP.lillDEiDKlg.....s 434
                 + ++GPPG GKt la+++A+ ++ + +r+s        e+    + Y+G    +++  l   ++ + P +i++DEiD +g      
  MMETSP1137-20121227|8333_1 188 VLMYGPPGTGKTLLARAVAHHTDCTXIRVSGS------EL---VQKYIGE-GSRMVRELfVMAREHAPsIIFMDEIDSIGgqrleG 263
                 679************************99833......33...2458876.45777766234555556466778888887655542 PP

>> TIGR02902  spore_lonB: ATP-dependent protease LonB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.8   0.0   3.1e-05     0.007      81     108 ..     180     207 ..     157     216 .. 0.86
   2 ?   -1.5   0.0      0.68   1.5e+02     473     530 ..     249     306 ..     242     307 .. 0.84

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 3.1e-05
   TIGR02902  81 lcGpnpqhviiyGppGvGktaaarlvle 108
                 l    p+ v++yGppG Gkt  ar v +
  MMETSP1137-20121227|8333_1 180 LGIAQPKGVLMYGPPGTGKTLLARAVAH 207
                 5556899*****************9865 PP

  == domain 2    score: -1.5 bits;  conditional E-value: 0.68
   TIGR02902 473 lnGlvkpvGGvsskieaakkaGakkviipkenyqevleslekikvipvknlkevlevv 530
                 ++ ++ ++GG     e+   + +++ ++   n+ + +e  ++ikvi   n  ++l+ +
  MMETSP1137-20121227|8333_1 249 FMDEIDSIGGQRLEGESGGDSEVQRTMLELLNQLDGFEATNQIKVIMATNRLDILDSA 306
                 56678889999888899999999999999999999*********99988887888765 PP

>> TIGR00678  holB: DNA polymerase III, delta' subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.0   1.9e-05    0.0044      14      41 ..     185     212 ..     181     233 .. 0.87

  Alignments for each domain:
  == domain 1    score: 14.5 bits;  conditional E-value: 1.9e-05
   TIGR00678  14 ahAlLfaGpeGvGkealaealakallCe 41 
                 ++ +L++Gp+G+Gk+ la+a+a+++ C+
  MMETSP1137-20121227|8333_1 185 PKGVLMYGPPGTGKTLLARAVAHHTDCT 212
                 5689***********************8 PP

>> TIGR02640  gas_vesic_GvpN: gas vesicle protein GvpN
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.0   2.7e-05    0.0062      24      57 ..     188     221 ..     182     239 .. 0.84

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 2.7e-05
   TIGR02640  24 vhlrGPaGtGktslalhvakkrdrPvvllnGdae 57 
                 v + GP GtGkt la++va++ d   + + G + 
  MMETSP1137-20121227|8333_1 188 VLMYGPPGTGKTLLARAVAHHTDCTXIRVSGSEL 221
                 6789*******************99999999754 PP

>> TIGR02903  spore_lon_C: ATP-dependent protease, Lon family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.8   0.0   2.9e-05    0.0066     155     196 ..     165     206 ..     136     214 .. 0.81

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 2.9e-05
   TIGR02903 155 eivGqeraikallaklaspfpqhiilyGppGvGkttaarlal 196
                 e++   +    l+  l    p+ +++yGppG Gkt  ar + 
  MMETSP1137-20121227|8333_1 165 EVIELPIKHPELFESLGIAQPKGVLMYGPPGTGKTLLARAVA 206
                 55555555556777788889******************9875 PP

>> TIGR00368  TIGR00368: Mg chelatase-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.9   0.0   5.8e-05     0.013     208     231 ..     182     205 ..     146     209 .. 0.90

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 5.8e-05
   TIGR00368 208 aaGghnllllGPPGsGktllakrl 231
                 +a    +l+ GPPG+Gktlla+ +
  MMETSP1137-20121227|8333_1 182 IAQPKGVLMYGPPGTGKTLLARAV 205
                 66677899*************986 PP

>> TIGR02237  recomb_radB: DNA repair and recombination protein RadB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.0      0.21        47      96     133 ..      31      69 ..      20      74 .. 0.81
   2 ?    5.5   0.0     0.013         3      17      36 ..     190     209 ..     181     216 .. 0.83
   3 ?    2.3   0.0      0.12        28      82     148 ..     229     298 ..     222     313 .. 0.74

  Alignments for each domain:
  == domain 1    score: 1.6 bits;  conditional E-value: 0.21
   TIGR02237  96 ekadlvvvDsltalyRleksddr.islklelarqlslLl 133
                 ++++l+v +  ++l Rle ++++ +s ++ l + lslL+
  MMETSP1137-20121227|8333_1  31 DELELIVREKTSNLRRLEAQRNElNSKVRLLREELSLLQ 69 
                 4689***************99996666777788888887 PP

  == domain 2    score: 5.5 bits;  conditional E-value: 0.013
   TIGR02237  17 iyGpggsGKtnialilavea 36 
                 +yGp+g+GKt +a  +a ++
  MMETSP1137-20121227|8333_1 190 MYGPPGTGKTLLARAVAHHT 209
                 7*********9998877665 PP

  == domain 3    score: 2.3 bits;  conditional E-value: 0.12
   TIGR02237  82 qekaiqkaskliekekadlvvvDsltal..yRleksddr.islklelarqlslLlslArkkdlavvitnq 148
                  ++++++++ +++++  +++ +D + ++   Rle +     ++++ + + l+ L  + +++++ v+++  
  MMETSP1137-20121227|8333_1 229 GSRMVRELFVMAREHAPSIIFMDEIDSIggQRLEGESGGdSEVQRTMLELLNQLDGFEATNQIKVIMATN 298
                 5678999999999999999999999877335776543323688888888888899999999999987543 PP

>> TIGR03420  DnaA_homol_Hda: DnaA regulatory inactivator Hda
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   0.00036     0.083      37     106 ..     184     260 ..     174     266 .. 0.64
   2 ?   -1.1   0.0       1.1   2.5e+02     196     216 ..     273     293 ..     268     299 .. 0.80

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 0.00036
   TIGR03420  37 aerllylwGesgsGksHLLqAacaaaeeagksaiylplkelaqll..........vevlegleqaelvalDdvealager 106
                 + + + ++G++g+Gk+ L +A+++++  +    i ++ +el+q            + v++  ++ +++ +D+++++ g+r
  MMETSP1137-20121227|8333_1 184 QPKGVLMYGPPGTGKTLLARAVAHHTDCT---XIRVSGSELVQKYigegsrmvreLFVMAREHAPSIIFMDEIDSIGGQR 260
                 5566889***************9987544...333333333332211111211113456666777888888888888776 PP

  == domain 2    score: -1.1 bits;  conditional E-value: 1.1
   TIGR03420 196 rsLlelLdaLdkaslaekrki 216
                 r++lelL++Ld +  +++ k+
  MMETSP1137-20121227|8333_1 273 RTMLELLNQLDGFEATNQIKV 293
                 678999999999888887766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (407 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       286  (0.0697221); expected 82.0 (0.02)
Passed bias filter:                      214  (0.0521697); expected 82.0 (0.02)
Passed Vit filter:                        50  (0.0121892); expected 4.1 (0.001)
Passed Fwd filter:                        18  (0.0043881); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              18  [number of targets reported over threshold]
# CPU time: 0.55u 0.17s 00:00:00.72 Elapsed: 00:00:00.56
# Mc/sec: 959.28
//
Query:       MMETSP1137-20121227|8334_1  [L=365]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (365 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        86  (0.0209654); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.16s 00:00:00.43 Elapsed: 00:00:00.39
# Mc/sec: 1235.28
//
Query:       MMETSP1137-20121227|8336_1  [L=144]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (144 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       103  (0.0251097); expected 82.0 (0.02)
Passed bias filter:                       97  (0.023647); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.14s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 655.39
//
Query:       MMETSP1137-20121227|8337_1  [L=280]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.51    5.7  26.8       0.51    5.7  18.6    1.1  1  TIGR00927 2A1904: K+-dependent Na+/Ca+ exchanger


Domain annotation for each model (and alignments):
>> TIGR00927  2A1904: K+-dependent Na+/Ca+ exchanger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7  18.6   0.00012      0.51     767     882 ..     163     272 ..      52     280 .] 0.48

  Alignments for each domain:
  == domain 1    score: 5.7 bits;  conditional E-value: 0.00012
   TIGR00927 767 eaegekdee.sggeaeqegeseekaeeeseGeieaerkgedegegeieakea....evkGeeeeeeveaeeeteaeGdedegeieaeeeGeekededegeieakeevevegdedeteieae 882
                 + +g+++++ +g ++e+ege+e+k ++e+e + e+e +ge+++ege+   +a    +  G  ++  ve+e++t+ eG       +a  +G  +     + +e++ +ve + +++e+   ++
  MMETSP1137-20121227|8337_1 163 DENGNVKQRaEGADSEDEGEGEGKRDAEEESQGEGESEGESKEEGEAGRTKAtpetDEAGAAQDASVEREGSTQREG-------DAMPKGAATAGS--AAVEGGTSVEPKPEDEEAG--GN 272
                 22333332202334444444444433333333333333444444433333320000223333333334444444444.......222222222221..2233333333332222221..11 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (280 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        63  (0.0153584); expected 82.0 (0.02)
Passed bias filter:                       40  (0.00975134); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.24u 0.13s 00:00:00.37 Elapsed: 00:00:00.37
# Mc/sec: 998.84
//
Query:       MMETSP1137-20121227|8338_1  [L=830]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (830 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       172  (0.0419308); expected 82.0 (0.02)
Passed bias filter:                       96  (0.0234032); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.49u 0.14s 00:00:00.63 Elapsed: 00:00:00.62
# Mc/sec: 1766.95
//
Query:       MMETSP1137-20121227|8339_1  [L=410]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.6e-35  118.6   0.0    6.8e-35  118.0   0.0    1.2  1  TIGR00093 TIGR00093: pseudouridine synthase
    2.3e-07   28.2   0.0    7.3e-06   23.3   0.0    2.1  2  TIGR00005 rluA_subfam: pseudouridine synthase, RluA family


Domain annotation for each model (and alignments):
>> TIGR00093  TIGR00093: pseudouridine synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  118.0   0.0   3.3e-38   6.8e-35       1     157 [.     238     394 ..     238     397 .. 0.94

  Alignments for each domain:
  == domain 1    score: 118.0 bits;  conditional E-value: 3.3e-38
   TIGR00093   1 nKPkgvlsskdDpekrkvvkdlleklrgkklaavGRLDrdseGlllltddgelqhrlthpekevektYlvqvegsvtdedl.ealrkGv.kledektkpaklklikepelktklrvtlteGrnrqvrRltaavglevlrLvRvrigdvslegLeeGewr 157
                 +KP gv s+  D ++r  + ++l++l  k++++vGRLD d++Glll++ dg l+hr++hp++eve++Y ++v+++v+ ++l e+l++Gv ++ed++t     kl++ +     +r+ + eG++r vrR++a+ g +vl L+R r+g v l +LeeGe  
  MMETSP1137-20121227|8339_1 238 HKPVGVHSTIGDSRGRPSLIHVLPELWRKQMHPVGRLDADTSGLLLFSRDGILTHRMLHPKYEVEREYEATVKNTVDAHALgEKLSSGVaTIEDGETYIVFGKLLHAEG--NTVRLQVAEGKYRMVRRILANCGHPVLTLHRLRYGSVWLGDLEEGEVV 394
                 7************************989************************************************99877589****966999999999999986555..5799999**************************************975 PP

>> TIGR00005  rluA_subfam: pseudouridine synthase, RluA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    2.7   0.0    0.0067        14       7      36 ..     174     202 ..     171     214 .. 0.87
   2 !   23.3   0.0   3.5e-09   7.3e-06      87     170 ..     239     316 ..     234     340 .. 0.81

  Alignments for each domain:
  == domain 1    score: 2.7 bits;  conditional E-value: 0.0067
   TIGR00005   7 rldevlaselkdlsrskikklieegqVkvn 36 
                 rld++la +    sr+++ kli++g V+++
  MMETSP1137-20121227|8339_1 174 RLDKLLADRGL-GSRKDVDKLIRNGLVEID 202
                 89999998877.89**************98 PP

  == domain 2    score: 23.3 bits;  conditional E-value: 3.5e-09
   TIGR00005  87 KPsglvvhptggyekntvlnallahlkeelvsrleivhRLDrdTSGllvvaktekaleeLkeqlkektvkkeYvalvkgefksk 170
                 KP g+    +      +++++l          ++++v RLD dTSGll++++     +++ +   + +v++eY+a vk  ++++
  MMETSP1137-20121227|8339_1 239 KPVGVHSTIGDSRGRPSLIHVLPELWR----KQMHPVGRLDADTSGLLLFSRDGILTHRMLH--PKYEVEREYEATVKNTVDAH 316
                 777777777777777788888888888....369******************9755544433..3678*********9988755 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (410 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        94  (0.0229157); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.31u 0.12s 00:00:00.43 Elapsed: 00:00:00.44
# Mc/sec: 1229.90
//
Query:       MMETSP1137-20121227|8340_1  [L=309]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (309 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        86  (0.0209654); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.13s 00:00:00.37 Elapsed: 00:00:00.38
# Mc/sec: 1073.28
//
Query:       MMETSP1137-20121227|8341_1  [L=264]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (264 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       106  (0.0258411); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.15s 00:00:00.40 Elapsed: 00:00:00.36
# Mc/sec: 967.92
//
Query:       MMETSP1137-20121227|8342_1  [L=289]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.2e-17   60.9   0.4    1.5e-17   60.6   0.3    1.0  1  TIGR03903 TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
    2.2e-06   25.1   0.0    4.5e-06   24.1   0.0    1.5  1  TIGR03724 arch_bud32: Kae1-associated kinase Bud32


Domain annotation for each model (and alignments):
>> TIGR03903  TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.6   0.3   7.5e-21   1.5e-17      16     188 ..      28     204 ..      17     218 .. 0.79

  Alignments for each domain:
  == domain 1    score: 60.6 bits;  conditional E-value: 7.5e-21
   TIGR03903  16 aeeerlvaRFrReialCarLshPnivaLlDsGeaedgllFavFeyveGrtlrevLaadG.aLpaaetgrLmlqvLDalaaahdaGvvhRDLkPqnimvsaadveshakvLDFGigaLlpgvedadeatltr.....ttevlGsPaYaaPeqL...RgepvtaksDlYaWGLivleCLtGkrv 188
                  +    +aRF Re  l +r  hP i  Ll    + + +   +  y  G  l  +L a G +L+a+  + ++  v +a+ + h+ Gv+hRD+k +ni+v a +    a + D   + L +++    + ++       ++ v+G+ +Y aPe L   Rg + t + D+Y++ +++ e  t + v
  MMETSP1137-20121227|8342_1  28 ITCSADIARFERERDLLERCAHPRIATLLGIISSAPTYALVMPHYARGA-LFGILHASGeVLTAQAKAIVLSDVSEAVCHLHSIGVLHRDIKTDNILVQADG---RAVLTDLNASELESNITSDIVVQARPtggffKQFVVGTLPYMAPELLrsvRGAAYTRACDVYSFAIVMNEVATQR-V 204
                 5566789***********************9999997777777777775.6667777764789999999999*************************98766...58999********9987655555443012225679**********983335899**********99998877755.4 PP

>> TIGR03724  arch_bud32: Kae1-associated kinase Bud32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.1   0.0   2.2e-09   4.5e-06      92     142 ..      93     144 ..      60     154 .. 0.83

  Alignments for each domain:
  == domain 1    score: 24.1 bits;  conditional E-value: 2.2e-09
   TIGR03724  92 elellkevGelvgklHkagivhgDlttsNiivk.ddklyliDfGLgkkskev 142
                 +  +l++v e+v++lH+ g++h D+ t Ni+v+ d++++l D+  ++ ++++
  MMETSP1137-20121227|8342_1  93 KAIVLSDVSEAVCHLHSIGVLHRDIKTDNILVQaDGRAVLTDLNASELESNI 144
                 337899**************************64889999999888876665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (289 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.25u 0.13s 00:00:00.38 Elapsed: 00:00:00.38
# Mc/sec: 1003.81
//
Query:       MMETSP1137-20121227|8343_1  [L=91]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (91 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        55  (0.0134081); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.16s 00:00:00.31 Elapsed: 00:00:00.32
# Mc/sec: 375.34
//
Query:       MMETSP1137-20121227|8344_1  [L=70]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        92  (0.0224281); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.15s 00:00:00.26 Elapsed: 00:00:00.27
# Mc/sec: 342.19
//
Query:       MMETSP1137-20121227|8345_1  [L=307]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (307 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       102  (0.0248659); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.17s 00:00:00.40 Elapsed: 00:00:00.34
# Mc/sec: 1191.78
//
Query:       MMETSP1137-20121227|8346_1  [L=597]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.5e-75  251.7  10.0    3.1e-75  251.4   6.9    1.1  1  TIGR00881 2A0104: phosphoglycerate transporter family protein
    7.2e-50  168.1   9.6      1e-49  167.7   6.7    1.0  1  TIGR00712 glpT: glycerol-3-phosphate transporter
    5.2e-24   82.7  13.6    6.7e-24   82.4   9.4    1.1  1  TIGR00893 2A0114: D-galactonate transporter
    2.3e-12   45.1  24.2    8.1e-09   33.6   5.4    2.2  2  TIGR00880 2_A_01_02: multidrug resistance protein
    4.8e-10   36.7  15.4      7e-10   36.2  10.7    1.2  1  TIGR00890 2A0111: oxalate/formate antiporter
    7.2e-09   32.9  22.3    3.2e-07   27.4   5.5    3.6  3  TIGR00895 2A0115: MFS transporter, aromatic acid:H+ symporter (AAHS) family
    4.8e-07   26.5   5.9    1.2e-06   25.2   0.8    2.2  2  TIGR00894 2A0114euk: Na(+)-dependent inorganic phosphate cotransporter
    8.2e-05   20.0   3.3    8.2e-05   20.0   2.3    2.1  2  TIGR00710 efflux_Bcr_CflA: drug resistance transporter, Bcr/CflA subfamily
  ------ inclusion threshold ------
       0.17    8.4   9.5        0.3    7.6   6.6    1.3  1  TIGR00711 efflux_EmrB: drug resistance MFS transporter, drug:H+ antiporter-2 (14 Spanner) (DHA2) family


Domain annotation for each model (and alignments):
>> TIGR00881  2A0104: phosphoglycerate transporter family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  251.4   6.9   6.9e-78   3.1e-75       2     379 .]     171     543 ..     170     543 .. 0.95

  Alignments for each domain:
  == domain 1    score: 251.4 bits;  conditional E-value: 6.9e-78
   TIGR00881   2 igylayylvRknfalalpelqeeiglsktdlGlllsafsiaYgiskfvvgvvsDrvsarvflaigLilvaivnlflgfssslwvliallalnGlfqglgwppcgrlltkwfsr.serGtvvaiwnishnvggallpplvllaialllswhvvfivpgiiaiivslilllllrdspqsvglpkleelrneekeedkekkeeeltkkeillqyvlknkvlwlislvnvfvyvvrtgiedWvplYltqekglskekasvavtlfelaglvGtllaGwlsDklfkgrraplavifmaliivsllvywlivaanklvvlillfvlGflvyGpilligvaaselapkkaiGtaaglvglfaylggilaglplgyladlfgwagaf 379
                 + y+ + lvRkn+ + lp++ +e+g  k + Gll s f i+Yg + ++ gv+ D vs++ +l  gL+l+a+vn+++g+ ssl+++++l+  nG++q++gwp ++ +  +wf+    rG + +++++ +n g al+p l++  +   +sw+++++ p++++ + +  l +ll +sp+++  ++ +++   + ++++++ +++l   + l+++vl+n+ lwl++l ++ + ++rt + dW++++l ++kgls  +a    +++e +g+ G+l+aG +sDklf+grr+p+ v++ ali  +ll +    a+++l+  ++ + +Gf  +   +l+g+   e++ +++  +a g+v  +a++gg++ag plg l ++ gw+g f
  MMETSP1137-20121227|8346_1 171 MAYMSFLLVRKNYGFWLPSVLSELGAGKGEAGLLGSTFEIVYGSCALLNGVIIDLVSPKLLLTYGLLLSALVNIGIGSTSSLPLMVILWGGNGFIQSFGWPSVTNVFLSWFPDpASRGAWYSLLSTCQNAGAALVP-LLVSFFVSRYSWRAALYAPAAVCTVAAATLGALLYGSPAAYARRHGNDDEGGA-DRKQPQLPRGLA--RMLANQVLLNRALWLMALNYFCISLLRTSLSDWSTVFLREAKGLSMHTAARCLFTLETGGFAGSLVAGAVSDKLFNGRRGPVVVLCSALIAPALLCMLR--AESPLLLQACYAWMGFCAFPVHVLLGLFSREVVAPNMSSSAGGFVKCIAQVGGAFAGYPLGRLQQVAGWHGVF 543
                 789************************************************************************************************************96379********************.5666666789******************************9998888777776.677777766665..67999**************************************************************************************99999888..9999******************************************************************987 PP

>> TIGR00712  glpT: glycerol-3-phosphate transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  167.7   6.7   2.2e-52     1e-49      23     429 ..     158     555 ..     149     565 .. 0.91

  Alignments for each domain:
  == domain 1    score: 167.7 bits;  conditional E-value: 2.2e-52
   TIGR00712  23 ykrlrlqvflgiflgyaayylvrknfalalpy.lveqgfskaelglvlsavsiayglskfimgsvsdrsnprvflaaglllsalvmlllgllpwatssiaimfvllflngwfqgmgwppcgrtmvhwfsk.sergtivsiwnvahnigggilaalvllgialfvvwkaalylpaiiaiivallvvllvrdtpqscglpsieeyrndypddynekaek.eltakeillqyvlknkllwyiaianvfvylvrygvldwspvylkevkhfaledsawayflyeyagipgtllcgwvsdkvfkgkrgatgvlfmilvtiavvvywlnpagnplvdlillivigfliygpvmliglhalelapkkaagtaagltglfgylggsvaasaivgyavdrfgwdggflvliggsilavl 429
                 + r+r+  f  i++ y ++ lvrkn+ + lp  l e g  k+e gl++s+  i yg   ++ g + d   p+++l+ glllsalv++ +g+    tss+ +m +l   ng++q +gwp +   +  wf     rg+  s+  +++n g +++++lv + ++ + +w+aaly pa ++ + a  + +l+  +p +       ++ nd    + +k+ +      ++l + vl n+ lw +a+    + l+r  + dws v+l+e+k+++++ +a + f  e  g  g+l+ g vsdk+f+g+rg+  vl  +l+  a     +  a  pl  + +   +gf  +   +l+gl + e+   + + +a g+   +  +gg+ +a   +g   +  gw+g fl+l g ++l+ l
  MMETSP1137-20121227|8346_1 158 HPRVRYVEFGLIYMAYMSFLLVRKNYGFWLPSvLSELGAGKGEAGLLGSTFEIVYGSCALLNGVIIDLVSPKLLLTYGLLLSALVNIGIGS----TSSLPLMVILWGGNGFIQSFGWPSVTNVFLSWFPDpASRGAWYSLLSTCQNAGAALVPLLVSFFVSRY-SWRAALYAPAAVCTVAAATLGALLYGSPAAYA----RRHGNDDEGGADRKQPQlPRGLARMLANQVLLNRALWLMALNYFCISLLRTSLSDWSTVFLREAKGLSMHTAARCLFTLETGGFAGSLVAGAVSDKLFNGRRGPVVVLCSALIAPAL--LCMLRAESPLLLQACYAWMGFCAFPVHVLLGLFSREVVAPNMSSSAGGFVKCIAQVGGA-FAGYPLGRLQQVAGWHGVFLLLAGVAVLSAL 555
                 56999999999********************7367889*************************************************9985....9********************************76378*****************9999999887765.8***********************99998764....677888877777776541445678999****************************************************************************98888777665555..56889*******************999*********99999999************996.677889*********************9876 PP

>> TIGR00893  2A0114: D-galactonate transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.4   9.4   1.5e-26   6.7e-24      10     394 ..     180     556 ..     171     560 .. 0.88

  Alignments for each domain:
  == domain 1    score: 82.4 bits;  conditional E-value: 1.5e-26
   TIGR00893  10 ratlSiAavtlkedLglsaaqyglvfsafsigyvlfqlpggllldriGakktlavaivlWglftllqafatalvslivlRvllGlaEaplfPgiikivasWFP.akeratavsifnsaqalgaiiggplvgwilvefsWqlvFiieGvlaiilgvlilkvikdkpekakvlkeeeksivvggllaeqagkknseakkaqikelLkdrrviglalgqflvnillyffltwfplylkqerglslleagllaslpaivgfvgmvlggilsdlllkkgkslvlarktaiiaglvlsllliatnlvaskiaalalvalaffgkglaailwavis.dvlskeiagltgGlinllGnlagivgPivigaiaattGsfagallvvaalaligals 394
                 r ++++  +++  +Lg  + ++gl  s f i y  + l+ g+++d ++ k+ l+  ++l +l+ +  +   +l+ +++l    G   +  +P ++ +  sWFP ++ r++  s+    q  ga++++ lv + +   sW+++    ++++ + +  + ++++  p     ++ +  +  +gg +  ++ + ++  +++   ++L +r ++++al +f++++l + ++ w+ ++l++++gls+ +a+         gf g +  g +sd l + ++  v+    a+ia ++l++l      ++s+++  a +a ++f++    +l+ + s +v+ ++++ ++gG+++ +++++g ++   +g ++++ G + g++l++a++a+++al+
  MMETSP1137-20121227|8346_1 180 RKNYGFWLPSVLSELGAGKGEAGLLGSTFEIVYGSCALLNGVIIDLVSPKLLLTYGLLLSALVNIGIGSTSSLPLMVILWGGNGFIQSFGWPSVTNVFLSWFPdPASRGAWYSLLSTCQNAGAALVPLLVSFFVSRYSWRAALYAPAAVCTVAAATLGALLYGSPAA---YARRHGNDDEGG-ADRKQPQLPRGLARMLANQVLLNRALWLMALNYFCISLLRTSLSDWSTVFLREAKGLSMHTAARCLFTLETGGFAGSLVAGAVSDKLFNGRRGPVVVLCSALIAPALLCMLR-----AESPLLLQACYAWMGFCAFPVHVLLGLFSrEVVAPNMSSSAGGFVKCIAQVGGAFAGYPLGRLQQVAG-WHGVFLLLAGVAVLSALA 556
                 7888888999999*******************************************************999********************************5589********************************************************9993...333333333333.233567888999***************************************************99999999**************988766444444444444434444433.....34677777888888899966888888776378999*********************************.***************997 PP

>> TIGR00880  2_A_01_02: multidrug resistance protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.6   5.4   1.8e-11   8.1e-09      14     134 ..     215     336 ..     206     341 .. 0.92
   2 !   17.2   5.8     2e-06   0.00089      10     140 ..     434     563 ..     430     564 .. 0.86

  Alignments for each domain:
  == domain 1    score: 33.6 bits;  conditional E-value: 1.8e-11
   TIGR00880  14 vsplsglltdrvGrkpvllvglfifvlsqllfalssnitvliiarilqGfgaaaalvagaaliadiikee.ersvalgllsagialgpilGpllGavlaqalgwralflilallallafill 134
                 +++l g+++d v+ k +l  gl++ +l ++ +  +s++ +++i+    Gf+ ++ +++++ ++ + +++   r++ ++lls+++++g+ l pll ++ ++ ++wra +++ a+++++a+++l
  MMETSP1137-20121227|8346_1 215 CALLNGVIIDLVSPKLLLTYGLLLSALVNIGIGSTSSLPLMVILWGGNGFIQSFGWPSVTNVFLSWFPDPaSRGAWYSLLSTCQNAGAALVPLLVSFFVSRYSWRAALYAPAAVCTVAAATL 336
                 4556666677999******************************************************9998**********************************************99987 PP

  == domain 2    score: 17.2 bits;  conditional E-value: 2e-06
   TIGR00880  10 gqlvvsplsglltdrvGrkpvllvglfifvlsqllfals.snitvliiarilqGfgaaaalvagaaliadiikeeersvalgllsag.ialgpilGpllGavlaqalgwralflilallallafilllfllpe 140
                 g lv++ +s+ l   +Gr+ +++v+ +  ++ +ll++l  +++ +l  + +  Gf a ++ v  +   ++++++++ s a g++  + ++ g+  G +lG++  q+ gw+ +fl+la +a+l++++ + l+ +
  MMETSP1137-20121227|8346_1 434 GSLVAGAVSDKLF--NGRRGPVVVLCSALIAPALLCMLRaESPLLLQACYAWMGFCAFPVHVLLGLFSREVVAPNMSSSAGGFVKCIaQVGGAFAGYPLGRLQ-QVAGWHGVFLLLAGVAVLSALAAAPLWST 563
                 5678888888555..8********************996599**************9999999999999*************998651566788999**9965.666*************9999998877765 PP

>> TIGR00890  2A0111: oxalate/formate antiporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.2  10.7   1.5e-12     7e-10       5     375 ..     164     554 ..     160     556 .. 0.86

  Alignments for each domain:
  == domain 1    score: 36.2 bits;  conditional E-value: 1.5e-12
   TIGR00890   5 vlvgtvimalvs..givYtwtllapalgrklrvkvtavaiaftlllivlalsqvvgGkladkfGpravallggillgiGfifaaladslallyltyglasvgegivYgialstavkWfpd..krGLasgiiiggyGlGslilsplitsvielegveaafivmgivalll.ivllallikypek.............qkvkksievsekdvtvaealrtaqfwvlyvsfllaavsgllligllkaygrsli.ldvgalvlavsissllngggRlvlGavsDkigrlktmsivlsisavlllslllikkis.dvlflAlvalvaftiGgtfslfpslvskifgkknsaanyGllytakavagilggliaslvlteiGfeatllvtaalallsl 375
                 v  g + ma +s  ++   ++ ++p + ++l+++     +   ++ iv        G + d   p++    g  l+++  i  + + sl+l+ +++g  +  ++  + ++ +    Wfpd   rG   ++ +     G++ +  l + ++   + +aa  + ++v ++   +l+all + p               ++++ +  +    +  ++ l +   w++++ ++++++   +l+  +  + r+   l++ +++   +       +g lv GavsDk+   +   +v+  sa  + +ll +       l  A  a ++f+  ++  l    + ++ +++ s+   G++ +   v+g ++g+  + +    G++  +l+ a +a+ls+
  MMETSP1137-20121227|8346_1 164 VEFGLIYMAYMSflLVRKNYGFWLPSVLSELGAGKGEAGLLGSTFEIVYGSCALLNGVIIDLVSPKLLLTYGLLLSALVNIGIGSTSSLPLMVILWGGNGFIQSFGWPSVTNVFLSWFPDpaSRGAWYSLLSTCQNAGAALVPLLVSFFVSRYSWRAALYAPAAVCTVAaATLGALLYGSPAAyarrhgnddeggaDRKQPQLPRGLARMLANQVLLNRALWLMALNYFCISLLRTSLSDWSTVFLREAKgLSMHTAARCLFTLETGGFAGSLVAGAVSDKLFNGRRGPVVVLCSALIAPALLCMLRAEsPLLLQACYAWMGFCAFPVHVLLGLFSREVVAPNMSSSAGGFVKCIAQVGGAFAGYPLGRLQQVAGWHGVFLLLAGVAVLSA 554
                 5566666654431145667889999999999999999999999999999999**************************99***************************************96569*****************9999999**9999******9999999972589999999999999******999765555555555566778899999**************9999999988887666665666555555444455555799**********99999889988999888888888777735666799999************************************************************99998888875 PP

>> TIGR00895  2A0115: MFS transporter, aromatic acid:H+ symporter (AAHS) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.4   3.5   5.2e-05     0.024     268     396 ..     182     311 ..     135     313 .. 0.81
   2 !   27.4   5.5     7e-10   3.2e-07     128     391 ..     276     527 ..     269     533 .. 0.80
   3 !    5.2   1.3    0.0039       1.8     132     183 ..     501     552 ..     491     594 .. 0.75

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 5.2e-05
   TIGR00895 268 lltsWlPkLlveagaslskaalllvllnvGgvlgslllgaladrlgpk.vlalllllaavfavlvvstlssptllllllvilGlfvngaqsgllalmaefYp.taiRatgvgwaigiGrlgaiigpilagv 396
                     WlP  l+e+ga   +a ll+  +++     +ll g+++d + pk  l+ +lll+a + + ++s +ss  l+++l    G++   +  +++ +  + +p +a R+   + +  +  +ga++ p+l+ +
  MMETSP1137-20121227|8346_1 182 NYGFWLPSVLSELGAGKGEAGLLGSTFEIVYGSCALLNGVIIDLVSPKlLLTYGLLLSALVNIGIGS-TSSLPLMVILWGGNGFIQSFGWPSVTNVFLSWFPdPASRGAWYSLLSTCQNAGAALVPLLVSF 311
                 3457********************************************6666777777766666666.899999999999999999888887777777777747899999999999999999999999876 PP

  == domain 2    score: 27.4 bits;  conditional E-value: 7e-10
   TIGR00895 128 aLvsEyapkrfratvvglvavGyaiGaavggllaallipafgWrslflvggiiplllllllikvLpEs.ikflvekkpekvrkilnaiapslqaeaqselaeekseekkkrsvvkllfkgklakatllLw.llyflllvvvYlltsWlP.kLlveagaslskaalllvllnvGgvlgslllgaladrlgpk.vlalllllaavfavlvvs..tlssptllllllvilGlfvngaqsgllalmaefYptaiRatgvgwaigiGrlgaiigp 391
                 +++s +     r+   +l+    + Gaa+  ll ++ ++ + Wr  ++  +++  + ++ l   L  s ++++ +++++                  +e   ++++ +  r+  ++l ++ l ++ l L  l yf+ ++    l  W   +L   +g s++ aa +l+ l++Gg +gsl++ga++d+l  +    +++l++a +a ++     ++sp ll    + +G+++   ++ l   + e+ ++++ + + g +  i ++g++++ 
  MMETSP1137-20121227|8346_1 276 VFLSWFPDPASRGAWYSLLSTCQNAGAALVPLLVSFFVSRYSWRAALYAPAAVCTVAAATLGALLYGSpAAYARRHGND------------------DEGGADRKQPQLPRGLARMLANQVLLNRALWLMaLNYFCISLLRTSLSDWSTvFLREAKGLSMHTAARCLFTLETGGFAGSLVAGAVSDKLFNGrRGPVVVLCSALIAPALLCmlRAESPLLLQACYAWMGFCAFPVHVLLGLFSREVVAPNMSSSAGGFVKCIAQVGGAFAG 527
                 5555555566778888888888899999999999999999999999999999999999988888876526676666222..................23334444566789999999999887777665516799************997888999*******************************8665488899999999998887723455666666677889**************************99999999999999876 PP

  == domain 3    score: 5.2 bits;  conditional E-value: 0.0039
   TIGR00895 132 EyapkrfratvvglvavGyaiGaavggllaallipafgWrslflv.ggiipll 183
                 E ++  + +++ g+v +  ++G+a +g   + l  + gW+ +fl+ +g++ +l
  MMETSP1137-20121227|8346_1 501 EVVAPNMSSSAGGFVKCIAQVGGAFAGYPLGRLQQVAGWHGVFLLlAGVA-VL 552
                 77778888889999999999999999999999999999999997524432.22 PP

>> TIGR00894  2A0114euk: Na(+)-dependent inorganic phosphate cotransporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.2   0.8   2.6e-09   1.2e-06      95     227 ..     218     348 ..     200     418 .. 0.88
   2 !    3.7   0.2    0.0087         4     389     443 ..     503     554 ..     475     566 .. 0.86

  Alignments for each domain:
  == domain 1    score: 25.2 bits;  conditional E-value: 2.6e-09
   TIGR00894  95 pvGylakkygtkkvigaalllssvlslliPiaaavgvalvivlRvlqGlaeglvspaqhellakWiP.PkERsrlvsavlsGaqlGtlivlpisGlicesdlgWpavfYifgivgtvvlilwlvlvyddPseHp 227
                   G++ +  + k+++ ++llls ++++   i ++ +  l+++l   +G++++  +p+  +++  W+P P  R+   s+  + ++ G+++v ++  + +     W a  Y  ++v tv       l+y +P+   
  MMETSP1137-20121227|8346_1 218 LNGVIIDLVSPKLLLTYGLLLSALVNI--GIGSTSSLPLMVILWGGNGFIQSFGWPSVTNVFLSWFPdPASRGAWYSLLSTCQNAGAALVPLLVSFFVSR-YSWRAALYAPAAVCTVAAATLGALLYGSPAAYA 348
                 46778889999*************996..5677889999****************************99*****************99996666666665.48************************9998765 PP

  == domain 2    score: 3.7 bits;  conditional E-value: 0.0087
   TIGR00894 389 laPryagiikgvttligslaglissllvgqllkqdsksaWkkvFllaalvavisl 443
                 +aP+ ++   g  ++i++++g ++    g+l   ++   W+ vFll a vav+s 
  MMETSP1137-20121227|8346_1 503 VAPNMSSSAGGFVKCIAQVGGAFAGYPLGRL---QQVAGWHGVFLLLAGVAVLSA 554
                 6888888888999999999999999999987...45689************9986 PP

>> TIGR00710  efflux_Bcr_CflA: drug resistance transporter, Bcr/CflA subfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   4.5       1.7   7.8e+02      43     176 ..     202     336 ..     166     354 .. 0.79
   2 !   20.0   2.3   1.8e-07   8.2e-05      54     205 ..     432     586 ..     384     591 .. 0.83

  Alignments for each domain:
  == domain 1    score: -3.0 bits;  conditional E-value: 1.7
   TIGR00710  43 qltltlyllglavgqLllGplsDsyGRkpvlLlgllvfalsslvlalsenietllvlRflqafgasaalVisqalvrDiya.keelskvysilmlllalaPllapliGgyvlvflsWhaiFavlsligillvali 176
                  l  +++ +  +   Ll G + D    k  l  gll+ al  +++  +++   +++l    +f  s +  ++  +    ++  +     ys+l+       +l pl+ ++ +   sW+a  +  +++ ++++a +
  MMETSP1137-20121227|8346_1 202 GLLGSTFEIVYGSCALLNGVIIDLVSPKLLLTYGLLLSALVNIGIGSTSSLPLMVILWGGNGFIQSFGWPSVTNVFLSWFPdPASRGAWYSLLSTCQNAGAALVPLLVSFFVSRYSWRAALYAPAAVCTVAAATL 336
                 55556777777777888888888888888888999999999999999999999999987777777777777777777777755666889*****************************99999888888888765 PP

  == domain 2    score: 20.0 bits;  conditional E-value: 1.8e-07
   TIGR00710  54 avgqLllGplsDsy..GRk.pvlLlgllvfalsslvlalsenietllvlRflqafgasaalVisqalvrDiyakeelskvysilmlllalaPllapliGgyvlvflsWhaiFavlsligillvaliflllpeTkakekriqistsvetfllllkd 205
                  +g L+ G +sD++  GR+ pv+ l+  + a + l ++ +e+   l +     +f a    V+     r + a + +s   +++  +  +  + a +  g + + ++Wh +F +l+ +++l +++++ l+ +T +       + +v  f  l k+
  MMETSP1137-20121227|8346_1 432 FAGSLVAGAVSDKLfnGRRgPVVVLCSALIAPALLCMLRAESPLLLQACYAWMGFCAFPVHVLLGLFSREVVAPNMSSSAGGFVKCIAQVGGAFAGYPLGRLQQVAGWHGVFLLLAGVAVLSALAAAPLWSTTAQAAPLRCKQGTVADFEELTKS 586
                 3699********966799967777777776666666666666666666667889999999*************99**********************99*********************************99988777777777788888776 PP

>> TIGR00711  efflux_EmrB: drug resistance MFS transporter, drug:H+ antiporter-2 (14 Spanner) (DHA2) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   6.6   0.00065       0.3      25     161 ..     187     324 ..     166     343 .. 0.91

  Alignments for each domain:
  == domain 1    score: 7.6 bits;  conditional E-value: 0.00065
   TIGR00711  25 lptlaadlgaslsevqWviTsymvanaivIpltgwlakrlgerklflvsvlaFtlssllcgvannlelliifRviQgfggglliplseslllseyp.pekrglalalvglavlvaPvlGPiLgGwiieayeWrwiFli 161
                 lp + ++lga   e   +   + ++ +   +l g ++++++ + l   ++l+ +l  +  g +++l l++i     gf+++   p+++ + ls +p p++rg    l++     + +l P L  + +  y+Wr   + 
  MMETSP1137-20121227|8346_1 187 LPSVLSELGAGKGEAGLLGSTFEIVYGSCALLNGVIIDLVSPKLLLTYGLLLSALVNIGIGSTSSLPLMVILWGGNGFIQSFGWPSVTNVFLSWFPdPASRGAWYSLLSTCQNAGAALVPLLVSFFVSRYSWRAALYA 324
                 678888999999999999999**************************************************************************989***********************************98875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (597 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       121  (0.0294978); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                        18  (0.0043881); expected 4.1 (0.001)
Passed Fwd filter:                         9  (0.00219405); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.53u 0.15s 00:00:00.68 Elapsed: 00:00:00.63
# Mc/sec: 1250.75
//
Query:       MMETSP1137-20121227|8347_1  [L=132]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (132 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       184  (0.0448562); expected 82.0 (0.02)
Passed bias filter:                      132  (0.0321794); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.12s 00:00:00.31 Elapsed: 00:00:00.40
# Mc/sec: 435.56
//
Query:       MMETSP1137-20121227|8349_1  [L=197]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.3e-41  137.8   0.0    6.9e-41  137.4   0.0    1.1  1  TIGR01961 NuoC_fam: NADH (or F420H2) dehydrogenase, subunit C


Domain annotation for each model (and alignments):
>> TIGR01961  NuoC_fam: NADH (or F420H2) dehydrogenase, subunit C
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  137.4   0.0   1.7e-44   6.9e-41       9     121 ..      44     160 ..      37     161 .. 0.91

  Alignments for each domain:
  == domain 1    score: 137.4 bits;  conditional E-value: 1.7e-44
   TIGR01961   9 ellevlkalkd.eelrfellldvsgvdypkkk.efevvyhllslkknkkrirlkvklsedds...vpslvsvfkaanwsErEaydlyGivfdghpdlrrillpedfeGhPlrkdyplk 121
                  + +vl++l+d + +r + l+dv+++d+p+++ +fe+ y+lls+++n+ rir+k+ +  ++    vp+ +s+f++anw ErE++d+yG++f+ghpdlrril++++f+GhP+rkd+pl+
  MMETSP1137-20121227|8349_1  44 AVPTVLQFLRDhSGTRCKQLVDVTAIDIPSRDkRFELAYQLLSIDHNS-RIRVKTMVGGHEGsdgVPTSTSIFSSANWLEREVWDMYGVFFSGHPDLRRILTDYGFQGHPMRKDFPLS 160
                 56789******9999************988767*************98.9*****9975443347***************************************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (197 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        78  (0.0190151); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.19u 0.16s 00:00:00.35 Elapsed: 00:00:00.48
# Mc/sec: 541.71
//
Query:       MMETSP1137-20121227|8350_1  [L=40]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (40 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        41  (0.00999512); expected 82.0 (0.02)
Passed bias filter:                       41  (0.00999512); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.13s 00:00:00.24 Elapsed: 00:00:00.27
# Mc/sec: 195.54
//
Query:       MMETSP1137-20121227|8351_1  [L=415]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (415 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       270  (0.0658216); expected 82.0 (0.02)
Passed bias filter:                      123  (0.0299854); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.17s 00:00:00.49 Elapsed: 00:00:00.49
# Mc/sec: 1117.87
//
Query:       MMETSP1137-20121227|8352_1  [L=578]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (578 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       112  (0.0273038); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.18s 00:00:00.52 Elapsed: 00:00:00.46
# Mc/sec: 1658.47
//
Query:       MMETSP1137-20121227|8353_1  [L=195]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (195 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        88  (0.0214529); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.22s 00:00:00.35 Elapsed: 00:00:00.34
# Mc/sec: 757.00
//
Query:       MMETSP1137-20121227|8354_1  [L=255]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.4e-71  237.1   0.0      4e-71  236.8   0.0    1.0  1  TIGR01351 adk: adenylate kinases
    9.1e-34  114.6   0.1    2.1e-25   87.3   0.0    2.1  2  TIGR01360 aden_kin_iso1: adenylate kinase
    2.6e-30  103.5   0.0    5.4e-22   76.4   0.0    2.0  2  TIGR01359 UMP_CMP_kin_fam: UMP-CMP kinase family
    0.00033   18.2   0.5      0.024   12.1   0.1    2.2  2  TIGR03263 guanyl_kin: guanylate kinase
    0.00041   18.2   0.2     0.0014   16.5   0.0    1.9  2  TIGR02173 cyt_kin_arch: putative cytidylate kinase
     0.0041   14.7   0.0     0.0064   14.0   0.0    1.3  1  TIGR00017 cmk: cytidylate kinase
  ------ inclusion threshold ------
      0.021   11.7   0.0      0.029   11.2   0.0    1.2  1  TIGR00635 ruvB: Holliday junction DNA helicase RuvB


Domain annotation for each model (and alignments):
>> TIGR01351  adk: adenylate kinases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  236.8   0.0   6.9e-74     4e-71       2     211 ..      43     253 ..      42     254 .. 0.97

  Alignments for each domain:
  == domain 1    score: 236.8 bits;  conditional E-value: 6.9e-74
   TIGR01351   2 lvllGpPGsGKGTqakrlaeklglvhistGdllRaevkkktelgkkakeylekGklvpdeiviklvkerleeeedeekgfiLDGfPRtleQaeaLdelleelglkldavielkvpdevlverisgRricpkcgkvynlkfkkpkv......ecddctaellkqReDDteevvkkRlevYkeqteplieyYkkkgklveidaekkieevlkeileal 211
                 l+l+GpPG+GKG+qa  +++klg++++stGd+lRa+v+++te+gk+a++++++G+lv+deiv+k+++er+++  d++ gfiLDGfPRtl Qa++Ld+ll +   +++ vi l+vpd vl eri+gR+i++++g++y++kf++pk       + dd+t+e l+qR+DDtee++++Rl++Y++qt p++++Y+k  ++v++da+++ e+v ++i ++l
  MMETSP1137-20121227|8354_1  43 LILFGPPGAGKGSQAPMIVDKLGIPQLSTGDMLRAAVTAGTEVGKEADRVMKSGALVSDEIVLKIIDERIKQ-PDCAAGFILDGFPRTLPQAKLLDQLLGS--EHITLVIALEVPDAVLTERICGRWIHKASGRSYHKKFAPPKSlaegngMLDDETGEALEQRKDDTEEALRSRLQAYHAQTVPILKHYNK--VVVRVDANRAPEQVSSTIVKIL 253
                 79********************************************************************99.88***********************985..579**************************************999999999*************************************87..58999*********99999876 PP

>> TIGR01360  aden_kin_iso1: adenylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.3   0.0   3.5e-28   2.1e-25       4     128 ..      41     166 ..      38     180 .. 0.89
   2 !   25.4   0.0   3.6e-09   2.1e-06     132     184 ..     202     252 ..     192     254 .. 0.91

  Alignments for each domain:
  == domain 1    score: 87.3 bits;  conditional E-value: 3.5e-28
   TIGR01360   4 kiifivGGpGsGkGtqcekivekyGfthlssGdllreevasgsergkklqaimekGelvpldvvldllkeallkalekskGflidGyprevkqGeefekriaea..klvlyldvsedtlvkrllkra 128
                 +++ + G pG+GkG+q   iv+k G+  ls+Gd+lr+ v++g+e gk+   +m++G+lv+ ++vl+++ e + k+ + + Gf++dG+pr   q + +++ ++    +lv+ l+v +  l++r+  r 
  MMETSP1137-20121227|8354_1  41 QLLILFGPPGAGKGSQAPMIVDKLGIPQLSTGDMLRAAVTAGTEVGKEADRVMKSGALVSDEIVLKIIDERI-KQPDCAAGFILDGFPRTLPQAKLLDQLLGSEhiTLVIALEVPDAVLTERICGRW 166
                 56778899************************************************************9976.77899*********************997642279999***********99883 PP

  == domain 2    score: 25.4 bits;  conditional E-value: 3.6e-09
   TIGR01360 132 arvddnektikkrletykkatepvieyyeskgkllkinaegtvddvflevvaa 184
                  r+dd+e++++ rl++y+ +t p++++y+    +++++a++++++v  ++v+ 
  MMETSP1137-20121227|8354_1 202 QRKDDTEEALRSRLQAYHAQTVPILKHYNK--VVVRVDANRAPEQVSSTIVKI 252
                 599*************************99..99************9999875 PP

>> TIGR01359  UMP_CMP_kin_fam: UMP-CMP kinase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.4   0.0   9.2e-25   5.4e-22       3     133 ..      44     174 ..      42     183 .. 0.93
   2 !   25.2   0.0   4.8e-09   2.8e-06     131     184 ..     202     253 ..     194     254 .. 0.91

  Alignments for each domain:
  == domain 1    score: 76.4 bits;  conditional E-value: 9.2e-25
   TIGR01359   3 fvlGgPGsGkGtqCakiveefkfvhlsaGdllreeikregseegelieslikeGkivPsevtvellekaikeseeskkflidGfPrneenleaweklidekvevkfvlfldcseevmvkrllkr..gqssGrv 133
                  ++G+PG+GkG q   iv+++++  ls+Gd+lr+++   g e g+  + ++k G +v  e+ +++++++ik+ + +  f++dGfPr     +   +l+  + +++ v+ l++++ v+++r+  r   ++sGr+
  MMETSP1137-20121227|8354_1  44 ILFGPPGAGKGSQAPMIVDKLGIPQLSTGDMLRAAVT-AGTEVGKEADRVMKSGALVSDEIVLKIIDERIKQPDCAAGFILDGFPRTLPQAKLLDQLLG-SEHITLVIALEVPDAVLTERICGRwiHKASGRS 174
                 568**********************************.9**************************************************9999998886.668999*****************9555779997 PP

  == domain 2    score: 25.2 bits;  conditional E-value: 4.8e-09
   TIGR01359 131 Grvddnieslkkrletykeetlpvieyfekknkvkkidaeksveevfeevekif 184
                  r+dd +e+l+ rl+ y+ +t+p++++++k   v ++da++  e+v + + ki+
  MMETSP1137-20121227|8354_1 202 QRKDDTEEALRSRLQAYHAQTVPILKHYNK--VVVRVDANRAPEQVSSTIVKIL 253
                 59**************************87..599**********999998876 PP

>> TIGR03263  guanyl_kin: guanylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.3   0.0    0.0099       5.8       2      23 ..      41      62 ..      40      80 .. 0.83
   2 !   12.1   0.1   4.1e-05     0.024     128     178 ..     198     249 ..     193     251 .. 0.86

  Alignments for each domain:
  == domain 1    score: 4.3 bits;  conditional E-value: 0.0099
   TIGR03263  2 klivisgpsGvGKstlvkklle 23
                +l+++ gp G+GK++ + ++++
  MMETSP1137-20121227|8354_1 41 QLLILFGPPGAGKGSQAPMIVD 62
                699***********97776665 PP

  == domain 2    score: 12.1 bits;  conditional E-value: 4.1e-05
   TIGR03263 128 eRlkkRgtdseeviekRlekAkk.elkaaeefdyvivNddlekaveelksii 178
                 e l++R++d+ee++++Rl++ ++  +   ++++ v+v  d ++a e+++s i
  MMETSP1137-20121227|8354_1 198 EALEQRKDDTEEALRSRLQAYHAqTVPILKHYNKVVVRVDANRAPEQVSSTI 249
                 5699**************9876516788999***************999876 PP

>> TIGR02173  cyt_kin_arch: putative cytidylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0   2.4e-06    0.0014       3      46 ..      43      86 ..      41     117 .. 0.83
   2 ?   -1.4   0.0      0.74   4.4e+02      71     107 ..     205     241 ..     184     251 .. 0.67

  Alignments for each domain:
  == domain 1    score: 16.5 bits;  conditional E-value: 2.4e-06
   TIGR02173  3 ivisGpPGsGkttvakilaeklslklisaGkirelaekkgldla 46
                +++ GpPG+Gk + a ++ +kl++  +s+G++   a + g ++ 
  MMETSP1137-20121227|8354_1 43 LILFGPPGAGKGSQAPMIVDKLGIPQLSTGDMLRAAVTAGTEVG 86
                5778***************************9999988888774 PP

  == domain 2    score: -1.4 bits;  conditional E-value: 0.74
   TIGR02173  71 keknvvlesrlagWllkeyaDvkiylkaslevraeri 107
                  + +  l srl ++ +++++ +k y k  ++v a+r 
  MMETSP1137-20121227|8354_1 205 DDTEEALRSRLQAYHAQTVPILKHYNKVVVRVDANRA 241
                 3334567788888888888888888888888877775 PP

>> TIGR00017  cmk: cytidylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.0   1.1e-05    0.0064       9      41 ..      47      79 ..      40     111 .. 0.87

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 1.1e-05
   TIGR00017  9 GPsaaGKstvakalaeklgykyldsGalYRvla 41
                GP +aGK++ a  + +klg   l++G + R+  
  MMETSP1137-20121227|8354_1 47 GPPGAGKGSQAPMIVDKLGIPQLSTGDMLRAAV 79
                9*****************************865 PP

>> TIGR00635  ruvB: Holliday junction DNA helicase RuvB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   4.9e-05     0.029      26      56 ..      36      66 ..      27     110 .. 0.83

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 4.9e-05
   TIGR00635 26 rkealdhvllyGPPGlGkttlakiiakelgv 56
                  e+ + ++l+GPPG Gk + a +i  +lg 
  MMETSP1137-20121227|8354_1 36 YGEQRQLLILFGPPGAGKGSQAPMIVDKLGI 66
                567788899***************9999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (255 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       186  (0.0453437); expected 82.0 (0.02)
Passed bias filter:                      171  (0.041687); expected 82.0 (0.02)
Passed Vit filter:                        25  (0.00609459); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.19u 0.26s 00:00:00.45 Elapsed: 00:00:00.86
# Mc/sec: 391.36
//
Query:       MMETSP1137-20121227|8355_1  [L=384]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (384 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        62  (0.0151146); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.13s 00:00:00.40 Elapsed: 00:00:00.47
# Mc/sec: 1078.38
//
Query:       MMETSP1137-20121227|8356_1  [L=650]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (650 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       216  (0.0526572); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.15s 00:00:00.55 Elapsed: 00:00:00.57
# Mc/sec: 1479.19
//
Query:       MMETSP1137-20121227|8357_1  [L=227]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (227 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       159  (0.0387616); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.17s 00:00:00.39 Elapsed: 00:00:00.68
# Mc/sec: 440.61
//
Query:       MMETSP1137-20121227|8358_1  [L=163]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.1e-14   50.2   0.0    5.8e-14   50.0   0.0    1.1  1  TIGR02540 gpx7: putative glutathione peroxidase Gpx7


Domain annotation for each model (and alignments):
>> TIGR02540  gpx7: putative glutathione peroxidase Gpx7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.0   0.0   1.4e-17   5.8e-14      10     134 ..      19     146 ..      10     160 .. 0.85

  Alignments for each domain:
  == domain 1    score: 50.0 bits;  conditional E-value: 1.4e-17
   TIGR02540  10 ikgrlvslekyrgkvslvvnvaseceftdknyralqelqrelgpshfnvlafpcnqfgesepksskeiesfarkn.ygvtfp...ifskikilgseaepafrflvdsskkeprwnfwk.ylvdpegkvvk 134
                 ++g  +s++   gk  l++nvas+   t + y+ +++l+ ++gp  +++l fp ++fg +e  s+k i +f+ k+      p   ++ k+k  g++a p +    +s   + +wnf   +l d eg+ v 
  MMETSP1137-20121227|8358_1  19 LNGGSLSMSSLAGKPILMMNVASDEAATASGYKLMKQLHTKFGPG-LEILLFPSDEFGGQELPSEK-IPAFVEKQgLPLDAPgchVMAKVKTNGPNASPIWSLAKESFPGDVTWNFAAiFLFDKEGNCVA 146
                 568889999**********************************96.89*************87765.788876542555555444899****************************754999****9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (163 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        59  (0.0143832); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.17u 0.13s 00:00:00.30 Elapsed: 00:00:00.28
# Mc/sec: 741.87
//
Query:       MMETSP1137-20121227|8359_1  [L=414]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (414 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       263  (0.0641151); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.17s 00:00:00.48 Elapsed: 00:00:00.46
# Mc/sec: 1187.90
//
Query:       MMETSP1137-20121227|8360_1  [L=263]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.3e-19   67.4   0.1    4.2e-19   66.6   0.1    1.4  1  TIGR00988 hip: integration host factor, beta subunit
    1.5e-16   58.4   0.1    2.9e-16   57.5   0.1    1.4  1  TIGR00987 himA: integration host factor, alpha subunit
     0.0045   14.7   0.5     0.0098   13.6   0.3    1.5  1  TIGR01201 HU_rel: putative DNA-binding protein


Domain annotation for each model (and alignments):
>> TIGR00988  hip: integration host factor, beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.6   0.1     3e-22   4.2e-19       2      92 ..      62     151 ..      61     153 .. 0.94

  Alignments for each domain:
  == domain 1    score: 66.6 bits;  conditional E-value: 3e-22
   TIGR00988   2 ikselieriateqshlsakdvekavktlleelaealarGdrieirGfGsfslkkraartGrnpktGesveldekyvpffkpGkelrdrvne 92 
                  ks+l++ ia++   + +++   ++   l+ ++e++a+Gd++ + GfG+f  k r+artGrnpktGe + + +  vp f  Gk ++d v +
  MMETSP1137-20121227|8360_1  62 SKSKLVDAIAEKA-GVNKRTAGMVLTAALDVIVESVAKGDKVSLVGFGTFDSKERKARTGRNPKTGEAMVIPDAVVPTFSFGKSFKDAVKQ 151
                 5999****99865.699**********************************************************************9876 PP

>> TIGR00987  himA: integration host factor, alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.5   0.1   2.1e-19   2.9e-16       2      93 ..      61     152 ..      60     155 .. 0.96

  Alignments for each domain:
  == domain 1    score: 57.5 bits;  conditional E-value: 2.1e-19
   TIGR00987   2 ltkaelsealfeelGlskreakelvelvleeirdalergeqvklsgfGnfdlrdkrqrpGrnpktGeeipitarrvvtfrpgqklkdrveea 93 
                 ++k +l +a+ e+ G++kr a  ++   l+ i +++ +g++v l gfG+fd ++++ r+GrnpktGe + i    v tf  g+ +kd v+++
  MMETSP1137-20121227|8360_1  61 VSKSKLVDAIAEKAGVNKRTAGMVLTAALDVIVESVAKGDKVSLVGFGTFDSKERKARTGRNPKTGEAMVIPDAVVPTFSFGKSFKDAVKQQ 152
                 6789999********************************************************************************99876 PP

>> TIGR01201  HU_rel: putative DNA-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   0.3   7.2e-06    0.0098      26      81 ..      56     111 ..      49     128 .. 0.89

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 7.2e-06
   TIGR01201  26 vksgsvdleeiaeliseeStlspGdVkgildrlakvlrreLasGktvklgeiGsFr 81 
                 + +  v+ +++++ i+e+ ++ +     +l+++  v+ + +a+G +v+l + G+F 
  MMETSP1137-20121227|8360_1  56 AVNMAVSKSKLVDAIAEKAGVNKRTAGMVLTAALDVIVESVAKGDKVSLVGFGTFD 111
                 5566788999*********************************************6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (263 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       166  (0.0404681); expected 82.0 (0.02)
Passed bias filter:                      121  (0.0294978); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.25u 0.12s 00:00:00.37 Elapsed: 00:00:00.45
# Mc/sec: 771.40
//
Query:       MMETSP1137-20121227|8362_1  [L=470]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.6e-07   28.1   0.2      0.071   10.7   0.0    3.4  3  TIGR03804 para_beta_helix: parallel beta-helix repeat


Domain annotation for each model (and alignments):
>> TIGR03804  para_beta_helix: parallel beta-helix repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.2   0.0    0.0018       7.3       1      40 [.     270     310 ..     258     314 .. 0.81
   2 !   10.7   0.0   1.7e-05     0.071       1      40 [.     316     356 ..     316     360 .. 0.90
   3 !    8.9   0.4   6.3e-05      0.26      10      42 ..     371     404 ..     362     406 .. 0.85

  Alignments for each domain:
  == domain 1    score: 4.2 bits;  conditional E-value: 0.0018
   TIGR03804   1 GIyLesssnntlenNtasnNsy.GIyLydSsnNtlsnNtas 40 
                 G+ +++ ++  +e+N +  N+  G+ + + +++ +  N + 
  MMETSP1137-20121227|8362_1 270 GVLMCDFGRGLIEDNEICFNGRaGVAILSGADPQVCRNKIH 310
                 67788888888999999888888999988888887777765 PP

  == domain 2    score: 10.7 bits;  conditional E-value: 1.7e-05
   TIGR03804   1 GIyLesssnntlenNtasnNsy.GIyLydSsnNtlsnNtas 40 
                 G+ +++ ++ ++e N +++N+  G+ +   + + ++ N + 
  MMETSP1137-20121227|8362_1 316 GVLISEKGRGRIEENDIFGNRRaGVAILKEGAPLVKRNKIH 356
                 7788888999******************9999999999886 PP

  == domain 3    score: 8.9 bits;  conditional E-value: 6.3e-05
   TIGR03804  10 ntlenNtasnNsy.GIyLydSsnNtlsnNtasnN 42 
                  ++ +N ++ N   G+ + + + +++++Nt+s+ 
  MMETSP1137-20121227|8362_1 371 GSVCDNEIFANQMaGVAIGRGGASRVTGNTISDG 404
                 56789***************************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (470 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        90  (0.0219405); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.12s 00:00:00.45 Elapsed: 00:00:00.43
# Mc/sec: 1442.67
//
Query:       MMETSP1137-20121227|8364_1  [L=38]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (38 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        24  (0.0058508); expected 82.0 (0.02)
Passed bias filter:                       24  (0.0058508); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.17s 00:00:00.28 Elapsed: 00:00:00.25
# Mc/sec: 200.62
//
Query:       MMETSP1137-20121227|8365_1  [L=182]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-08   31.3   0.0    2.5e-05   20.6   0.0    2.0  2  TIGR00691 spoT_relA: RelA/SpoT family protein


Domain annotation for each model (and alignments):
>> TIGR00691  spoT_relA: RelA/SpoT family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   0.0   6.2e-09   2.5e-05     557     591 ..       6      43 ..       1      49 [. 0.87
   2 !    9.1   0.0   1.8e-05     0.076     599     682 ..      92     176 ..      74     181 .. 0.84

  Alignments for each domain:
  == domain 1    score: 20.6 bits;  conditional E-value: 6.2e-09
   TIGR00691 557 lakcCspipgdeiigivtkk...kklvvHrksCknlkn 591
                 + +cC+p+pgd+i g++ k+   + lvvHr++C+ l++
  MMETSP1137-20121227|8365_1   6 FGSCCRPLPGDKIAGVLYKSpegERLVVHRSFCEVLAK 43 
                 679***************9877789********99876 PP

  == domain 2    score: 9.1 bits;  conditional E-value: 1.8e-05
   TIGR00691 599 ieveweas.kekaqkfeveikiellekkgvlskllkalsenesniesisvkek.dkreaileitlevkdkkqllkimekikkvedv 682
                 + v+w +s ++ ++++++e+++e  +k   l ++ ++ +++ s+i++       +  ++++ ++lev+d  +l +i++ i     v
  MMETSP1137-20121227|8365_1  92 VVVNWGESwQQWRTSYMTEVEVEFADKL-SLPEVSEVTANQGSQIRRFALLRGqGSTSVKVAVQLEVRDLLHLERILAGISALASV 176
                 67999998777899999*****999876.5899**************988776588999*****************9998876665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (182 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        61  (0.0148708); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.18u 0.14s 00:00:00.32 Elapsed: 00:00:00.35
# Mc/sec: 686.34
//
Query:       MMETSP1137-20121227|8366_1  [L=421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (421 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       104  (0.0253535); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.14s 00:00:00.45 Elapsed: 00:00:00.45
# Mc/sec: 1234.83
//
Query:       MMETSP1137-20121227|8367_1  [L=104]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (104 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       146  (0.0355924); expected 82.0 (0.02)
Passed bias filter:                      104  (0.0253535); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.14s 00:00:00.29 Elapsed: 00:00:00.28
# Mc/sec: 490.25
//
Query:       MMETSP1137-20121227|8368_1  [L=188]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (188 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.12s 00:00:00.30 Elapsed: 00:00:00.30
# Mc/sec: 827.13
//
Query:       MMETSP1137-20121227|8370_1  [L=129]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (129 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        46  (0.011214); expected 82.0 (0.02)
Passed bias filter:                       42  (0.0102389); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.14s 00:00:00.28 Elapsed: 00:00:00.42
# Mc/sec: 405.40
//
Query:       MMETSP1137-20121227|8371_1  [L=472]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-08   31.1   0.5    1.8e-08   30.7   0.3    1.1  1  TIGR02865 spore_II_E: stage II sporulation protein E


Domain annotation for each model (and alignments):
>> TIGR02865  spore_II_E: stage II sporulation protein E
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.7   0.3   4.5e-12   1.8e-08     686     762 ..     314     389 ..     304     391 .. 0.87

  Alignments for each domain:
  == domain 1    score: 30.7 bits;  conditional E-value: 4.5e-12
   TIGR02865 686 dvevekkklkngDl.ivlvsDGvlegekeeegkeeWlvkvlkeektndPeeiaeellekal...elrkgkikDDmTvivak 762
                 ++e+ + +++++D+ +++ sDGv e  +++      +v++l++ k +dP ei+++++e+a    + ++g  +DD+Tv+v+ 
  MMETSP1137-20121227|8371_1 314 EPEITEYDITDDDVaLIIASDGVWELLSSQT-----VVDILSNVKNLDPMEICNNIIEQASymwKVEEGDYRDDITVVVVT 389
                 6789999******868899*******99988.....***********************963337899***********85 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (472 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        85  (0.0207216); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.18s 00:00:00.52 Elapsed: 00:00:00.68
# Mc/sec: 916.16
//
Query:       MMETSP1137-20121227|8372_1  [L=68]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (68 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        31  (0.00755729); expected 82.0 (0.02)
Passed bias filter:                       31  (0.00755729); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:00.62
# Mc/sec: 144.76
//
Query:       MMETSP1137-20121227|8373_1  [L=371]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.1e-28   97.6   0.1    1.5e-28   97.1   0.0    1.2  1  TIGR00311 aIF-2beta: putative translation initiation factor aIF-2, beta subunit


Domain annotation for each model (and alignments):
>> TIGR00311  aIF-2beta: putative translation initiation factor aIF-2, beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.1   0.0   3.7e-32   1.5e-28       2     131 ..     217     352 ..     216     355 .. 0.89

  Alignments for each domain:
  == domain 1    score: 97.1 bits;  conditional E-value: 3.7e-32
   TIGR00311   2 yeelleraiekl....adkvvekerfevpkveilieGn.rtiiknfrevakalnrdeehllkyllkelGtaGnleg.GrlilqgkfteellkkriedyvrkyvicrecnkpdtkiikegrvlllkclacGakrpvr 131
                 yeeller +  l    ++   +++rf +   ++++eG+ r ++ nf e+ k+lnr++eh++ ++l e+Gt+G +++  r++++g+f ++ +++ i  yv +yv c  c++p+t + k +r+ +++c  cGa+r v 
  MMETSP1137-20121227|8373_1 217 YEELLERMYCLLvannPELAGDRKRFLIKPPQVVREGSkRVVLINFGEICKTLNRSPEHVYSFMLAEMGTTGSIDAsSRMVIKGRFPPKAIEQIIRRYVSEYVSCSSCKSPNTALQKSNRLYFMQCNNCGARRSVT 352
                 999****9876622113344459*****999*****96378899******************************9637*****************************************************99875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (371 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       163  (0.0397367); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.17s 00:00:00.52 Elapsed: 00:00:00.41
# Mc/sec: 1194.34
//
Query:       MMETSP1137-20121227|8374_1  [L=1363]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0086   13.5   0.3        0.4    8.1   0.0    2.7  2  TIGR01277 thiQ: thiamine ABC transporter, ATP-binding protein


Domain annotation for each model (and alignments):
>> TIGR01277  thiQ: thiamine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.1   0.0   9.8e-05       0.4      13      44 ..     433     464 ..     424     472 .. 0.86
   2 !    2.3   0.1    0.0057        24     122     157 ..     679     714 ..     661     725 .. 0.82

  Alignments for each domain:
  == domain 1    score: 8.1 bits;  conditional E-value: 9.8e-05
   TIGR01277  13 lplefdlsveaGervailGesGaGkstllnli 44 
                 + le +ls+  G   a +G  G Gkstl+nl+
  MMETSP1137-20121227|8374_1 433 EELEKQLSLGCGPSAAFIGLNGIGKSTLINLL 464
                 56778899999*******************96 PP

  == domain 2    score: 2.3 bits;  conditional E-value: 0.0057
   TIGR01277 122 lerlpeelsGGqrqrvalarclvrekpillldepfs 157
                 + rl +e+  G+ + + l rcl++++   ++++p+ 
  MMETSP1137-20121227|8374_1 679 ILRLRHEIHCGEGKSLHLDRCLLQDQLKEIMENPLR 714
                 448999*******************99888888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1363 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       260  (0.0633837); expected 82.0 (0.02)
Passed bias filter:                      188  (0.0458313); expected 82.0 (0.02)
Passed Vit filter:                        39  (0.00950756); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.01u 0.22s 00:00:01.23 Elapsed: 00:00:01.07
# Mc/sec: 1681.32
//
Query:       MMETSP1137-20121227|8375_1  [L=386]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (386 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        96  (0.0234032); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.15s 00:00:00.44 Elapsed: 00:00:00.31
# Mc/sec: 1643.48
//
Query:       MMETSP1137-20121227|8377_1  [L=397]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (397 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       139  (0.0338859); expected 82.0 (0.02)
Passed bias filter:                      113  (0.0275475); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.16s 00:00:00.47 Elapsed: 00:00:00.28
# Mc/sec: 1871.42
//
Query:       MMETSP1137-20121227|8378_1  [L=398]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (398 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       115  (0.0280351); expected 82.0 (0.02)
Passed bias filter:                      110  (0.0268162); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.16s 00:00:00.48 Elapsed: 00:00:00.34
# Mc/sec: 1545.05
//
Query:       MMETSP1137-20121227|8379_1  [L=529]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (529 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       167  (0.0407118); expected 82.0 (0.02)
Passed bias filter:                      135  (0.0329108); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.19s 00:00:00.60 Elapsed: 00:00:00.56
# Mc/sec: 1246.83
//
Query:       MMETSP1137-20121227|8380_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        29  (0.00706972); expected 82.0 (0.02)
Passed bias filter:                       27  (0.00658216); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.12s 00:00:00.23 Elapsed: 00:00:00.38
# Mc/sec: 180.62
//
Query:       MMETSP1137-20121227|8382_1  [L=464]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (464 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       845  (0.205997); expected 82.0 (0.02)
Passed bias filter:                       97  (0.023647); expected 82.0 (0.02)
Passed Vit filter:                        39  (0.00950756); expected 4.1 (0.001)
Passed Fwd filter:                        23  (0.00560702); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 1.28u 0.21s 00:00:01.49 Elapsed: 00:00:01.42
# Mc/sec: 431.29
//
Query:       MMETSP1137-20121227|8383_1  [L=326]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-22   78.0   0.0    1.9e-20   71.0   0.0    2.0  1  TIGR01293 Kv_beta: voltage-dependent potassium channel beta subunit


Domain annotation for each model (and alignments):
>> TIGR01293  Kv_beta: voltage-dependent potassium channel beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.0   0.0   4.5e-24   1.9e-20       1     227 [.      31     286 ..      31     308 .. 0.82

  Alignments for each domain:
  == domain 1    score: 71.0 bits;  conditional E-value: 4.5e-24
   TIGR01293   1 lkyrnlgksglrvsclglgtwvvfgsqisdeqaedllklayesginlfdiaevy.......aagkaetelgkilkkkgwrrssyvittkifwggkaee.....erglsrkhiieglkaslerlqleyvdivlanradpsspm.............e.....evvramtyvinqglalywgtsrwsaveimeaysvarqfnlippiveqaeyhlfqrekvelqlpelyhkigvgavtwsplalalvdskyddk.lpkas 227
                 + y  lg s l vs   lgt  ++g q + ++a d l  a++ g+n++d+ae y       + g++++ + k +k +   r s++++tk+     + +        + r  +i ++ asl rl+ +++d++ ++ +d   p+             +     e v  m  +i+ g   +wg s  +   + e   v+    +  p+  q  y l+qr   e  l e  +++ vg + +spl+ ++ ++ky +   p+a 
  MMETSP1137-20121227|8383_1  31 MTYTRLGSSDLMVSDCCLGTM-TWGKQNTAKEAADQLSAAWDMGVNFLDTAEGYpvpmtaeTQGETDRCIAKWMKTAKQPRDSVILATKVCGRNDRFTwfrdgPTIVNRDQVIASVDASLSRLETDHIDLLQIHWPDRYVPLfgttrydvskerdDevsfaEQVEVMGELIKAGKIRHWGLSNETPFGVCEFARVCDALGVPRPVSVQNSYSLLQRSD-ETGLVEAMRRLDVGYLPYSPLSAGVLSGKYRGLqTPPAG 286
                 78*****************95.789999999999999***************98444332235778889*********************865544332111145689**************************99988886444444444333312222267899**************************************************86.999***************************874355543 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (326 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       102  (0.0248659); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.27u 0.16s 00:00:00.43 Elapsed: 00:00:00.40
# Mc/sec: 1075.71
//
Query:       MMETSP1137-20121227|8384_1  [L=282]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (282 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        54  (0.0131643); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.15s 00:00:00.37 Elapsed: 00:00:00.32
# Mc/sec: 1163.15
//
Query:       MMETSP1137-20121227|8385_1  [L=147]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (147 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        55  (0.0134081); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.16s 00:00:00.34 Elapsed: 00:00:00.25
# Mc/sec: 776.10
//
Query:       MMETSP1137-20121227|8386_1  [L=81]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (81 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       114  (0.0277913); expected 82.0 (0.02)
Passed bias filter:                      110  (0.0268162); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.14s 00:00:00.28 Elapsed: 00:00:00.28
# Mc/sec: 381.83
//
Query:       MMETSP1137-20121227|8387_1  [L=182]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (182 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        55  (0.0134081); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.15s 00:00:00.32 Elapsed: 00:00:00.43
# Mc/sec: 558.65
//
Query:       MMETSP1137-20121227|8389_1  [L=177]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.023   12.6   0.8       0.21    9.5   0.0    2.4  2  TIGR04031 Htur_1727_fam: rSAM-partnered protein, Htur_1727 family


Domain annotation for each model (and alignments):
>> TIGR04031  Htur_1727_fam: rSAM-partnered protein, Htur_1727 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   0.0   5.1e-05      0.21      32      59 ..      39      66 ..      28      69 .. 0.92
   2 ?    0.6   0.2      0.03   1.2e+02      23      47 ..     114     138 ..     110     150 .. 0.69

  Alignments for each domain:
  == domain 1    score: 9.5 bits;  conditional E-value: 5.1e-05
   TIGR04031 32 vGsvsapsaDiareqaasLFdwvaealW 59
                 Gs++a  aD+a   a +L    a++lW
  MMETSP1137-20121227|8389_1 39 CGSINAELADGADGAAGNLHPHLAVELW 66
                7*************************** PP

  == domain 2    score: 0.6 bits;  conditional E-value: 0.03
   TIGR04031  23 edeedPLkhvGsvsapsaDiareqa 47 
                 e   d   hvG+ +a    +a+   
  MMETSP1137-20121227|8389_1 114 EALRDAAGHVGAWKAAAPTTAHSIR 138
                 5556777899999988888887654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (177 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        67  (0.0163335); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.19u 0.15s 00:00:00.34 Elapsed: 00:00:00.41
# Mc/sec: 569.81
//
Query:       MMETSP1137-20121227|8392_1  [L=69]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (69 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        32  (0.00780107); expected 82.0 (0.02)
Passed bias filter:                       27  (0.00658216); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.26
# Mc/sec: 350.28
//
Query:       MMETSP1137-20121227|8395_1  [L=912]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.7e-70  234.9  19.0    2.4e-35  120.0   0.0    3.9  3  TIGR03719 ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family
    1.5e-43  146.8   0.4    1.9e-20   71.0   0.1    4.0  3  TIGR03873 F420-0_ABC_ATP: proposed F420-0 ABC transporter, ATP-binding protein
    1.3e-38  131.1   8.6    4.4e-23   79.8   0.0    4.2  3  TIGR02857 CydD: thiol reductant ABC exporter, CydD subunit
    1.6e-38  130.3   0.2    3.6e-21   72.9   0.1    3.9  3  TIGR03375 type_I_sec_LssB: type I secretion system ATPase
    3.5e-35  119.5   0.0    7.4e-11   40.0   0.0    4.2  4  TIGR02673 FtsE: cell division ATP-binding protein FtsE
    3.8e-35  119.2   3.4    1.5e-22   78.1   0.1    3.4  3  TIGR01189 ccmA: heme ABC exporter, ATP-binding protein CcmA
    1.1e-34  117.3   0.3    2.6e-09   34.7   0.0    4.5  4  TIGR01166 cbiO: cobalt ABC transporter, ATP-binding protein
    2.8e-34  116.5   0.6    1.9e-15   54.8   0.5    4.2  3  TIGR03864 PQQ_ABC_ATP: ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system
    4.2e-34  115.7   0.0    6.7e-12   43.1   0.0    4.2  4  TIGR03608 L_ocin_972_ABC: putative bacteriocin export ABC transporter, lactococcin 972 group
    6.4e-34  115.4   3.3    8.3e-15   52.7   0.7    4.1  3  TIGR01188 drrA: daunorubicin resistance ABC transporter, ATP-binding protein
    5.3e-33  112.3   0.0    5.1e-15   53.4   0.0    4.3  3  TIGR02315 ABC_phnC: phosphonate ABC transporter, ATP-binding protein
    7.9e-33  111.6   0.0    4.1e-10   36.6   0.0    4.2  4  TIGR01842 type_I_sec_PrtD: type I secretion system ATPase
    1.4e-32  111.1   0.0    2.9e-17   61.0   0.0    4.1  3  TIGR00960 3a0501s02: type II secretory pathway family protein
    1.9e-32  110.4   0.0    1.5e-09   34.8   0.0    4.1  4  TIGR03797 NHLM_micro_ABC2: NHLM bacteriocin system ABC transporter, ATP-binding protein
    1.1e-31  107.8  27.7    5.1e-21   72.7   0.1    5.5  4  TIGR02868 CydC: thiol reductant ABC exporter, CydC subunit
    1.6e-31  107.4   0.0      1e-11   42.6   0.0    4.3  4  TIGR02211 LolD_lipo_ex: lipoprotein releasing system, ATP-binding protein
    2.9e-31  106.5   0.0    5.4e-13   46.7   0.0    4.4  4  TIGR00972 3a0107s01c2: phosphate ABC transporter, ATP-binding protein
    5.3e-31  105.9   0.2      2e-12   45.0   0.1    4.4  3  TIGR02769 nickel_nikE: nickel import ATP-binding protein NikE
      7e-31  105.0   0.1    1.8e-15   54.0   0.1    3.8  3  TIGR03796 NHLM_micro_ABC1: NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein
    1.2e-28   98.1   0.0    1.1e-13   49.3   0.0    3.8  3  TIGR03740 galliderm_ABC: lantibiotic protection ABC transporter, ATP-binding subunit
    2.5e-28   96.6   0.0    4.3e-08   29.7   0.0    4.1  4  TIGR00958 3a01208: antigen peptide transporter 2
    1.7e-27   94.3   0.1    6.6e-11   40.0   0.0    4.3  3  TIGR02982 heterocyst_DevA: ABC exporter ATP-binding subunit, DevA family
    3.4e-27   93.2   0.1    6.9e-12   43.1   0.0    5.2  4  TIGR03410 urea_trans_UrtE: urea ABC transporter, ATP-binding protein UrtE
    4.2e-27   93.1   2.1    2.2e-12   45.0   0.4    4.3  3  TIGR03771 anch_rpt_ABC: anchored repeat-type ABC transporter, ATP-binding subunit
    5.2e-27   92.5   0.8    1.4e-08   31.7   0.0    4.4  5  TIGR02204 MsbA_rel: ABC transporter, permease/ATP-binding protein
    8.9e-27   92.1   0.2    3.2e-07   28.1   0.0    4.2  4  TIGR03411 urea_trans_UrtD: urea ABC transporter, ATP-binding protein UrtD
    1.8e-26   90.9   0.2    2.2e-11   41.5   0.0    4.2  4  TIGR00968 3a0106s01: sulfate ABC transporter, ATP-binding protein
    5.3e-26   89.5   1.1    1.7e-10   38.5   0.0    4.2  4  TIGR03265 PhnT2: putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein
    5.3e-26   89.3   0.3    1.5e-10   38.7   0.0    4.3  3  TIGR02324 CP_lyasePhnL: phosphonate C-P lyase system protein PhnL
    9.3e-26   88.3   2.6    8.3e-10   36.0   0.2    3.6  3  TIGR01288 nodI: nodulation ABC transporter NodI
    1.5e-24   84.6   0.0      3e-07   27.9   0.0    4.3  4  TIGR01978 sufC: FeS assembly ATPase SufC
    1.9e-24   84.3   0.2    6.3e-07   27.0   0.0    4.2  4  TIGR01277 thiQ: thiamine ABC transporter, ATP-binding protein
    2.7e-24   84.0   0.0      1e-10   39.4   0.0    4.0  3  TIGR03522 GldA_ABC_ATP: gliding motility-associated ABC transporter ATP-binding subunit GldA
    3.4e-24   82.9   0.0    7.9e-08   28.8   0.0    4.1  4  TIGR01846 type_I_sec_HlyB: type I secretion system ATPase
    1.7e-23   80.8   0.0    1.9e-09   34.4   0.0    4.1  4  TIGR03269 met_CoM_red_A2: methyl coenzyme M reductase system, component A2
      2e-23   81.0   0.6      8e-09   33.0   0.0    4.3  4  TIGR02142 modC_ABC: molybdate ABC transporter, ATP-binding protein
      8e-23   78.8   0.0    5.2e-10   36.8   0.0    4.3  4  TIGR03005 ectoine_ehuA: ectoine/hydroxyectoine ABC transporter, ATP-binding protein EhuA
    2.1e-22   77.5   0.0    1.4e-10   38.8   0.1    4.1  3  TIGR02770 nickel_nikD: nickel import ATP-binding protein NikD
    2.1e-22   77.2   0.0    8.2e-08   29.0   0.0    3.9  4  TIGR01193 bacteriocin_ABC: ABC-type bacteriocin transporter
    4.7e-21   73.0   0.1    7.9e-08   29.5   0.1    4.0  3  TIGR02314 ABC_MetN: D-methionine ABC transporter, ATP-binding protein
    2.2e-20   70.5   0.0    6.2e-06   22.8   0.0    4.2  4  TIGR02203 MsbA_lipidA: lipid A export permease/ATP-binding protein MsbA
    4.6e-20   69.9   0.1    4.2e-08   30.5   0.0    4.3  4  TIGR01186 proV: glycine betaine/L-proline transport ATP binding subunit
    2.7e-19   67.3   0.0    2.1e-08   31.4   0.0    4.3  4  TIGR03258 PhnT: 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT
    8.6e-19   65.6   0.1    1.2e-09   35.6   0.0    4.1  4  TIGR01187 potA: polyamine ABC transporter, ATP-binding protein
    1.4e-18   65.1   2.1    3.8e-07   27.7   0.1    4.2  3  TIGR01184 ntrCD: nitrate ABC transporter, ATP-binding proteins C and D
    3.4e-18   62.4   0.7    5.8e-10   35.1   0.1    3.8  3  TIGR01271 CFTR_protein: cystic fibrosis transmembrane conductor regulator (CFTR)
    8.7e-18   61.8   0.0    2.3e-05   20.9   0.0    4.2  4  TIGR02633 xylG: D-xylose ABC transporter, ATP-binding protein
      8e-16   55.5   0.0    3.8e-05   20.3   0.0    4.2  4  TIGR00955 3a01204: pigment precursor permease
    1.3e-15   54.7   6.9    5.8e-08   29.4   0.1    3.9  2  TIGR00954 3a01203: peroxysomal long chain fatty acyl transporter
    2.8e-15   54.3   0.2      7e-06   23.5   0.0    4.2  4  TIGR02323 CP_lyasePhnK: phosphonate C-P lyase system protein PhnK
    2.9e-12   43.8   6.7    0.00025   17.6   0.0    3.8  4  TIGR01192 chvA: glucan exporter ATP-binding protein
    4.4e-12   42.1   0.3    2.7e-05   19.6   0.2    3.8  3  TIGR00957 MRP_assoc_pro: multi drug resistance-associated protein (MRP)
      1e-09   35.7   9.2    1.6e-06   25.1   0.0    4.7  4  TIGR03415 ABC_choXWV_ATP: choline ABC transporter, ATP-binding protein
    2.1e-09   34.0   0.2    0.00026   17.1   0.1    3.2  3  TIGR00630 uvra: excinuclease ABC subunit A
    2.5e-06   22.4   0.0     0.0087   10.7   0.0    2.3  2  TIGR01257 rim_protein: rim ABC transporter
      4e-05   20.2   0.1      0.016   11.6   0.0    3.3  4  TIGR01194 cyc_pep_trnsptr: cyclic peptide transporter
    0.00012   17.6   0.0       0.16    7.3   0.0    3.4  3  TIGR00956 3a01205: pleiotropic drug resistance family protein
    0.00031   18.6   9.5       0.09   10.6   5.8    3.7  3  TIGR03499 FlhF: flagellar biosynthesis protein FlhF
     0.0051   12.4   0.0     0.0051   12.4   0.0    3.3  4  TIGR02168 SMC_prok_B: chromosome segregation protein SMC
  ------ inclusion threshold ------
      0.038   11.7   1.3        1.9    6.1   0.0    2.7  2  TIGR00152 TIGR00152: dephospho-CoA kinase
      0.051    9.6   0.2       0.16    7.9   0.0    1.9  2  TIGR00929 VirB4_CagE: type IV secretion/conjugal transfer ATPase, VirB4 family


Domain annotation for each model (and alignments):
>> TIGR03719  ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.5   0.0   1.5e-08     1e-06      16     112 ..      17     112 ..      11     126 .. 0.86
   2 !  101.2   0.2   1.7e-31   1.2e-29     120     270 ..     165     317 ..     140     358 .. 0.86
   3 !  120.0   0.0   3.5e-37   2.4e-35     303     536 ..     377     615 ..     369     630 .. 0.86

  Alignments for each domain:
  == domain 1    score: 25.5 bits;  conditional E-value: 1.5e-08
   TIGR03719  16 pkkeilkdislsffpgakiGvlGlnGaGkstllkimaGvdkefeGealaaegikvGyleqePkldeektvrenveegvaeikealdrfeeisaklae 112
                 + k++++d +ls ++g + G++G+nG+Gkst+++ +   + e   +a + +g+ + ++eqe +  +e t  ++v ++ +  +++l++ +e++++l e
  MMETSP1137-20121227|8395_1  17 GGKTLFHDAKLSLIHGRRYGLIGPNGCGKSTVMHAIGTGEVEEIRNA-IPPGMDILLVEQEVQASDEITALQMVVSADTRRTALLAEAKELEKTLEE 112
                 67999****************************98866666655555.569***********************99999999999999999887766 PP

  == domain 2    score: 101.2 bits;  conditional E-value: 1.7e-31
   TIGR03719 120 lleeqaklqekidaadawdldskleiamdalrlpe..edakveklsGGekrrvalcrlllekPdlllldePtnhldaesvaWlekflkeykGtvvavthdryfldnvaeWileldrGegipykgnysswleqkekrleqeekeeaarkkalkk 270
                 ++ + +++ ++++  +a + +++ +  +  l+  e  +++  + +sGG + r++l+r l+ kP lllldePtnhld  +v Wle +l+++k t+v+v hdr fl  v+  il   r + + y gny  + +  +++le+ +ke ++++k+lk+
  MMETSP1137-20121227|8395_1 165 IAGRLSDVYDELADIGADSAEQRASAILSGLQFLEeqKNWPTAAFSGGWRMRISLARALFVKPRLLLLDEPTNHLDLHAVIWLEGYLQKWKHTLVVVSHDRDFLTTVCTDILHCWRSKLVHYAGNYEVFEKVFASKLEEYNKEYERQQKKLKE 317
                 55566677788888888889999999999998865115677899**************************************************************************************************99999999986 PP

  == domain 3    score: 120.0 bits;  conditional E-value: 3.5e-37
   TIGR03719 303 kkeetaeivippgerlGdkvievenlskafgdk.lliddlsfklpkggivGviGpnGaGkstlfklitgkekpdsGelkiGetvklayvdq.srdalddnk.....tvweeisdGldllklgkvevnsrayvgrfnfkGadqqkkvgelsGGernrvhlakllkeggnvllldePtndldvetlraleeallefaGcavvishdrwfldriathilafegdskveffeGnyeeyeedkkkr 536
                  k+++ +i+ p++  +   ++ v+n+s +++++  l+ d++f l  ++ v ++G+nG+Gkstl+kl+ ++ +p +Ge++   + k++  +q s d+l +       +v   +s  + ++  +  + + r+ +g+f+++G+   + +++lsGG++ rv + +l  +   +llldePtn ld+et+ +l +al++f G ++vi+h+  ++++++  i   e+  kv+ f G++eey++   ++
  MMETSP1137-20121227|8395_1 377 IKSNNMHIHFPVAGEIAMPILAVDNVSFHYENQeDLFTDVDFGLNMDSRVALVGANGTGKSTLLKLMLSELTPTRGEVRQSRSCKIGVYNQhSCDQLAAGMrlakgEVLSPVSYLAHTFP-SMSTQEIRNALGKFGLEGHHHLQAIETLSGGQKSRVVFVELGLRRCHLLLLDEPTNHLDLETVDCLVKALHAFEGGVLVITHNVSLINKVCNQIWVIED-RKVNRFAGEFEEYRDMLAEQ 615
                 57788999**********************87627***************************************************9888835688887551111134444544443332.2233355999*******************************999***************************************************9985.69***********9876655 PP

>> TIGR03873  F420-0_ABC_ATP: proposed F420-0 ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   0.0   5.5e-07   3.7e-05       5      49 ..      10      54 ..       6     107 .. 0.80
   2 !   50.1   0.0   6.9e-16   4.6e-14     135     210 ..     206     278 ..     176     296 .. 0.85
   3 !   71.0   0.1   2.8e-22   1.9e-20       3     215 ..     398     598 ..     396     616 .. 0.82

  Alignments for each domain:
  == domain 1    score: 20.9 bits;  conditional E-value: 5.5e-07
   TIGR03873  5 srvsvraggrlivddvdvtaPaGaltgllGPnGsGkstllrllaG 49
                 + s+++gg+++  d +++  +G   gl+GPnG+Gkst+++ +  
  MMETSP1137-20121227|8395_1 10 PKFSISRGGKTLFHDAKLSLIHGRRYGLIGPNGCGKSTVMHAIGT 54
                67899**********************************987743 PP

  == domain 2    score: 50.1 bits;  conditional E-value: 6.9e-16
   TIGR03873 135 lstlsGGerqrvhlaralaqePklllldePtnhldvsaqlellalvrelaaegvtvvvalhdlnlaasvcdhvvvl 210
                 + ++sGG r r+ laral  +P+lllldePtnhld++a + l + +++    + t vv  hd ++ ++vc +++  
  MMETSP1137-20121227|8395_1 206 TAAFSGGWRMRISLARALFVKPRLLLLDEPTNHLDLHAVIWLEGYLQKW---KHTLVVVSHDRDFLTTVCTDILHC 278
                 4568*************************************99999999...99999999**********998755 PP

  == domain 3    score: 71.0 bits;  conditional E-value: 2.8e-22
   TIGR03873   3 rlsrvsvragg.rlivddvdvtaPaGaltgllGPnGsGkstllrllaGllapdaGevdlagadlkalsrrararrvalveqdsdaevplsvrdv..valGriPhrslfaadsdedaevvdralarvels.sladrdlstlsGGerqrvhlaralaqePklllldePtnhldvsaqlellalvrelaaegvtvvvalhdlnlaasvcdhvvvldgGrv 215
                  +++vs++ ++   + +dvd      +  +l+G nG+Gkstll+l+   l+p++Gev           r++r++++ + +q+s +++   +r +   +l  + +++   + ++  ++ +++al++ +l+ +   ++++tlsGG++ rv +     ++ +lllldePtnhld+++   l+++++     +  v+v  h+++l  +vc+++ v++  +v
  MMETSP1137-20121227|8395_1 398 AVDNVSFHYENqEDLFTDVDFGLNMDSRVALVGANGTGKSTLLKLMLSELTPTRGEV-----------RQSRSCKIGVYNQHSCDQLAAGMRLAkgEVLSPVSYLAH--TFPSMSTQEIRNALGKFGLEgHHHLQAIETLSGGQKSRVVFVELGLRRCHLLLLDEPTNHLDLETVDCLVKALHAF---EGGVLVITHNVSLINKVCNQIWVIEDRKV 598
                 5677787765415699***************************************99...........678************998776666441155666666554..3334456667899***99984556689************99999999***************98766555555555...88899999*************99988766 PP

>> TIGR02857  CydD: thiol reductant ABC exporter, CydD subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.0   0.0   0.00023     0.016     330     368 ..      15      52 ..       4     112 .. 0.87
   2 !   41.9   0.0     2e-13   1.4e-11     457     521 ..     207     269 ..     177     276 .. 0.89
   3 !   79.8   0.0   6.5e-25   4.4e-23     321     527 ..     396     591 ..     370     593 .. 0.81

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 0.00023
   TIGR02857 330 ayegrkpalkevsltvepgelvalvGaSGaGKstllkll 368
                 +  g++   ++ +l++  g++++l+G+ G+GKst+++++
  MMETSP1137-20121227|8395_1  15 SRGGKT-LFHDAKLSLIHGRRYGLIGPNGCGKSTVMHAI 52 
                 445555.8889999**********************987 PP

  == domain 2    score: 41.9 bits;  conditional E-value: 2e-13
   TIGR02857 457 agLSgGqrqRlaLArallrdapllllDEPtahLDaeteaevlealrelaegrtvllvaHrlalae 521
                 a  SgG r R++LAral  + +llllDEPt hLD ++   ++  l++   ++t+++v+H++  ++
  MMETSP1137-20121227|8395_1 207 AAFSGGWRMRISLARALFVKPRLLLLDEPTNHLDLHAVIWLEGYLQK--WKHTLVVVSHDRDFLT 269
                 679**********************************9999999999..689********98765 PP

  == domain 3    score: 79.8 bits;  conditional E-value: 6.5e-25
   TIGR02857 321 slelenvsvayegrkpalkevsltvepgelvalvGaSGaGKstllklllgfvepteGailvnga.elaeldadswrkqiawvpQkPllfegtvaenir...larkdaseaevkealeragldelvkalpqgleteiGergagLSgGqrqRlaLArallrdapllllDEPtahLDaeteaevlealrelaegrtvllvaHrlalaela.dkiv 527
                  l ++nvs+ ye++++  ++v++ ++  ++valvGa G GKstllkl+l  ++pt+G+++   + ++   +++    ++  ++    l +g v+  +    +  +  s++e+++al + gl+   ++l+         + + LSgGq+ R+    + lr ++llllDEPt hLD et   +++al+++  g  vl+++H+ +l++++ ++i+
  MMETSP1137-20121227|8395_1 396 ILAVDNVSFHYENQEDLFTDVDFGLNMDSRVALVGANGTGKSTLLKLMLSELTPTRGEVRQSRScKIGVYNQH----SCDQLAAGMRLAKGEVLSPVSylaHTFPSMSTQEIRNALGKFGLEG-HHHLQ---------AIETLSGGQKSRVVFVELGLRRCHLLLLDEPTNHLDLETVDCLVKALHAFEGG--VLVITHNVSLINKVcNQIW 591
                 6899********************************************************5444244444433....4555556677888888877754226678999*************66.44443.........4478********************************************98766..899****998876415555 PP

>> TIGR03375  type_I_sec_LssB: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.1   0.0   0.00056     0.037     482     512 ..      21      51 ..       9      59 .. 0.85
   2 !   41.6   0.0   1.7e-13   1.1e-11     603     668 ..     208     271 ..     198     297 .. 0.89
   3 !   72.9   0.1   5.4e-23   3.6e-21     467     679 ..     398     598 ..     378     603 .. 0.84

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 0.00056
   TIGR03375 482 aLknvslkikpGekvaiiGriGsGKstllkl 512
                   ++ +l++  G + ++iG +G+GKst+++ 
  MMETSP1137-20121227|8395_1  21 LFHDAKLSLIHGRRYGLIGPNGCGKSTVMHA 51 
                 5678899999*****************9876 PP

  == domain 2    score: 41.6 bits;  conditional E-value: 1.7e-13
   TIGR03375 603 sLSgGQrqavalaRallkdppillLDEPtsalDnsseekllerLkelladkTlvlvtHrtslLelv 668
                 ++SgG r  ++laRal  +p++llLDEPt++lD ++   l   L+++  ++Tlv+v+H   +L+ v
  MMETSP1137-20121227|8395_1 208 AFSGGWRMRISLARALFVKPRLLLLDEPTNHLDLHAVIWLEGYLQKW--KHTLVVVSHDRDFLTTV 271
                 78*******************************************99..57*******99999765 PP

  == domain 3    score: 72.9 bits;  conditional E-value: 5.4e-23
   TIGR03375 467 elknvsfkYpeeekaaLknvslkikpGekvaiiGriGsGKstllklllglyepteGsvlldgvdirqidpadlrrnigyvpqdvtLfyGtlrdNial...gapaaedeellraaelaGvtefvkkhpkGldlqigerGesLSgGQrqavalaRallkdppillLDEPtsalDnsseekllerLkelladkTlvlvtHrtslLe.lvdriivldkGri 679
                 +++nvsf+Y+++e     +v + ++  ++va++G +G+GKstllkl+l  ++pt+G+v        +i + + +++   ++  ++L  G++   + +     p+++ +e+ +a+ ++G++     h +          e LSgGQ+  v++  + l+  ++llLDEPt++lD ++ + l+++L+++     ++++tH  sl++ ++++i v+++ ++
  MMETSP1137-20121227|8395_1 398 AVDNVSFHYENQE-DLFTDVDFGLNMDSRVALVGANGTGKSTLLKLMLSELTPTRGEVRQS--RSCKIGVYN-QHSCDQLAAGMRLAKGEVLSPVSYlahTFPSMSTQEIRNALGKFGLEGHH--HLQA--------IETLSGGQKSRVVFVELGLRRCHLLLLDEPTNHLDLETVDCLVKALHAFEG--GVLVITHNVSLINkVCNQIWVIEDRKV 598
                 689******7765.67899**************************************9854..334444433.56778899999999999987665510055699*************98643..3333........368*******************************************99866..589********9636799999999886 PP

>> TIGR02673  FtsE: cell division ATP-binding protein FtsE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   0.0     0.017       1.2      16      48 ..      20      52 ..      12      65 .. 0.87
   2 !   40.0   0.0   1.1e-12   7.4e-11     111     208 ..     181     276 ..     175     281 .. 0.81
   3 !   34.4   0.0   5.4e-11   3.7e-09       2      60 ..     397     455 ..     396     475 .. 0.92
   4 !   32.8   0.0   1.7e-10   1.1e-08     114     211 ..     499     594 ..     490     597 .. 0.84

  Alignments for each domain:
  == domain 1    score: 6.6 bits;  conditional E-value: 0.017
   TIGR02673 16 eaLkdvslkiekgeflfltGasGaGkttllkll 48
                +  +d +l++ +g  + l+G+ G Gk+t+++ +
  MMETSP1137-20121227|8395_1 20 TLFHDAKLSLIHGRRYGLIGPNGCGKSTVMHAI 52
                5679999**********************9877 PP

  == domain 2    score: 40.0 bits;  conditional E-value: 1.1e-12
   TIGR02673 111 eeeiqkrveevlelvgledkakalp.eelsgGeqqRvaiaRaivnkPelllaDePtGnlDdelserildllkelnkrGttvivathdeelvervkkrvl 208
                 +++ ++r +++l+ + + + +k+ p  ++sgG + R+++aRa+  kP+lll DePt  lD +    ++ l   l+k   t++v++hd++++ +v + +l
  MMETSP1137-20121227|8395_1 181 ADSAEQRASAILSGLQFLEEQKNWPtAAFSGGWRMRISLARALFVKPRLLLLDEPTNHLDLHA---VIWLEGYLQKWKHTLVVVSHDRDFLTTVCTDIL 276
                 56788999999999986655555551689*******************************876...55555666666789********99988766655 PP

  == domain 3    score: 34.4 bits;  conditional E-value: 5.4e-11
   TIGR02673   2 ielekvskeyaagveaLkdvslkiekgeflfltGasGaGkttllklllgaekpsrGeve 60 
                 + +++vs++y+++ +  +dv++ ++  + + l+Ga G+Gk+tllkl+l  ++p+rGev+
  MMETSP1137-20121227|8395_1 397 LAVDNVSFHYENQEDLFTDVDFGLNMDSRVALVGANGTGKSTLLKLMLSELTPTRGEVR 455
                 6789*****************************************************97 PP

  == domain 4    score: 32.8 bits;  conditional E-value: 1.7e-10
   TIGR02673 114 iqkrveevlelvgledkak.alpeelsgGeqqRvaiaRaivnkPelllaDePtGnlDdelserildllkelnkrGttvivathdeelvervkkrvlele 211
                  +++++++l + gle +++ +  e+lsgG + Rv      +++ +lll DePt  lD e+   +++ l++++     v+v th+ +l+++v +++  +e
  MMETSP1137-20121227|8395_1 499 STQEIRNALGKFGLEGHHHlQAIETLSGGQKSRVVFVELGLRRCHLLLLDEPTNHLDLETVDCLVKALHAFE---GGVLVITHNVSLINKVCNQIWVIE 594
                 5688999*******97666155689********************************999888777776664...579999*********988877666 PP

>> TIGR01189  ccmA: heme ABC exporter, ATP-binding protein CcmA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   0.0   0.00019     0.013       5      45 ..      11      51 ..       7      59 .. 0.90
   2 !   27.1   0.1   9.1e-09   6.1e-07     117     173 ..     198     254 ..     173     267 .. 0.84
   3 !   78.1   0.1   2.2e-24   1.5e-22      10     188 ..     407     582 ..     397     591 .. 0.82

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 0.00019
   TIGR01189  5 elaveRgervlleglsfelaaGealvveGpnGiGKttLLRi 45
                +++++Rg+++l+++ +++l  G    + GpnG GK+t++  
  MMETSP1137-20121227|8395_1 11 KFSISRGGKTLFHDAKLSLIHGRRYGLIGPNGCGKSTVMHA 51
                56899********************************9865 PP

  == domain 2    score: 27.1 bits;  conditional E-value: 9.1e-09
   TIGR01189 117 LsgledlpvaqLsAGqkrRlalarLllskaplWiLDEPttalDkegvellaellaaH 173
                 L++ ++ p+a+ s G + R++lar l  k +l +LDEPt  lD ++v  l+  l++ 
  MMETSP1137-20121227|8395_1 198 LEEQKNWPTAAFSGGWRMRISLARALFVKPRLLLLDEPTNHLDLHAVIWLEGYLQKW 254
                 7788999****************************************9999988765 PP

  == domain 3    score: 78.1 bits;  conditional E-value: 2.2e-24
   TIGR01189  10 RgervlleglsfelaaGealvveGpnGiGKttLLRilaGLlkpesGevelndkelaeqrdelaeellylgHldglKaeLsalEnLkfyaallqseqktveealekvgLsgledlp.vaqLsAGqkrRlalarLllskaplWiLDEPttalDkegvellaellaaHlargGivllathqdl 188
                  +++ l+++++f l+    ++++G nG+GK+tLL+++   l+p+ Gev+ + +    + ++ + + l +g + +  + Ls +  L +    +++  +++ +al k gL+g+++l  +++Ls Gqk R+ +  L l +  l +LDEPt  lD e+v+ l ++l  H+ +gG+ +++   +l
  MMETSP1137-20121227|8395_1 407 ENQEDLFTDVDFGLNMDSRVALVGANGTGKSTLLKLMLSELTPTRGEVRQSRSCKIGVYNQHSCDQLAAGMRLAKGEVLSPVSYLAHTFPSMST--QEIRNALGKFGLEGHHHLQaIETLSGGQKSRVVFVELGLRRCHLLLLDEPTNHLDLETVDCLVKAL--HAFEGGVLVITHNVSL 582
                 35678********************************************986555555555555556677777777788888877766655553..46***************862689***************************************9988..7788998888876665 PP

>> TIGR01166  cbiO: cobalt ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.0   9.9e-05    0.0066       9      38 ..      23      52 ..      16      58 .. 0.85
   2 !   32.5   0.0   1.8e-10   1.2e-08     100     188 ..     182     266 ..     150     268 .. 0.80
   3 !   31.0   0.0     5e-10   3.4e-08       1      50 [.     406     455 ..     406     473 .. 0.94
   4 !   34.7   0.0   3.8e-11   2.6e-09     105     190 .]     500     583 ..     488     583 .. 0.88

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 9.9e-05
   TIGR01166  9 kglnlavergevlallGanGaGkstlllhl 38
                ++ +l++ +g++ +l+G+nG+Gkst+++ +
  MMETSP1137-20121227|8395_1 23 HDAKLSLIHGRRYGLIGPNGCGKSTVMHAI 52
                667888999*****************9875 PP

  == domain 2    score: 32.5 bits;  conditional E-value: 1.8e-10
   TIGR01166 100 seaeverrvrealaavd.isgleerpthllsgGekkrvaiagavalrpdvllldePtagldpaGaeqlleilrklreeGktvvisthdvd 188
                 +   +e+r +  l+ ++ +++ ++ pt  +sgG + r+++a a+ ++p++llldePt  ld + +  l   l+k +   +t+v+ +hd d
  MMETSP1137-20121227|8395_1 182 DS--AEQRASAILSGLQfLEEQKNWPTAAFSGGWRMRISLARALFVKPRLLLLDEPTNHLDLHAVIWLEGYLQKWK---HTLVVVSHDRD 266
                 43..3455555566555234567789***********************************999888888877765...68999999977 PP

  == domain 3    score: 31.0 bits;  conditional E-value: 5e-10
   TIGR01166   1 yedeaevlkglnlavergevlallGanGaGkstlllhlnGllrPksGkvl 50 
                 ye++ + ++++++ ++  +++al+GanG+Gkstll+ +   l P+ G+v 
  MMETSP1137-20121227|8395_1 406 YENQEDLFTDVDFGLNMDSRVALVGANGTGKSTLLKLMLSELTPTRGEVR 455
                 8999999****************************************996 PP

  == domain 4    score: 34.7 bits;  conditional E-value: 3.8e-11
   TIGR01166 105 errvrealaavdisglee.rpthllsgGekkrvaiagavalrpdvllldePtagldpaGaeqlleilrklreeGktvvisthdvdla 190
                 ++ +r+al + +++g ++ +++++lsgG+k rv        r ++llldePt  ld + ++ l+++l+ ++  G  v++ th+v l+
  MMETSP1137-20121227|8395_1 500 TQEIRNALGKFGLEGHHHlQAIETLSGGQKSRVVFVELGLRRCHLLLLDEPTNHLDLETVDCLVKALHAFE--G-GVLVITHNVSLI 583
                 56799********98776599**************9999999**********************9999874..3.466669999885 PP

>> TIGR03864  PQQ_ABC_ATP: ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.0   8.8e-05    0.0059       6      47 ..      11      52 ..       6      83 .. 0.87
   2 !   40.4   0.0     7e-13   4.7e-11      97     170 ..     172     246 ..     153     261 .. 0.82
   3 !   54.8   0.5   2.8e-17   1.9e-15       2     211 ..     397     599 ..     396     621 .. 0.76

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 8.8e-05
   TIGR03864  6 glsfaygkrralddvsltvakgefvaLLGpnGaGkstLfsll 47
                + s + g ++ ++d +l++ +g+   L+GpnG Gkst++  +
  MMETSP1137-20121227|8395_1 11 KFSISRGGKTLFHDAKLSLIHGRRYGLIGPNGCGKSTVMHAI 52
                5677778899999************************99765 PP

  == domain 2    score: 40.4 bits;  conditional E-value: 7e-13
   TIGR03864  97 yhaaLhGlsraeaeerieealarlg.laeraeekvreLnGGhrrrveiarallhePklLLlDeatvGLDiesraa 170
                  + +L  ++  +ae+r +++l+ l+ l+e+++    + +GG r r+ +aral  +P+lLLlDe+t  LD+++   
  MMETSP1137-20121227|8395_1 172 VYDELADIGADSAEQRASAILSGLQfLEEQKNWPTAAFSGGWRMRISLARALFVKPRLLLLDEPTNHLDLHAVIW 246
                 5778999****************993455666679**********************************988655 PP

  == domain 3    score: 54.8 bits;  conditional E-value: 2.8e-17
   TIGR03864   2 leveglsfaygkrral.ddvsltvakgefvaLLGpnGaGkstLfslltrLyeakegeikva.GldlrrapkealarlGvvfqqstlDldlsveqnlryhaaLhGlsraeaeerieealarlglaeraeek.vreLnGGhrrrveiarallhePklLLlDeatvGLDiesraalveevrelvreeglsvLWathlvdeveae.drlvvlhkGkvl 211
                 l+v+++sf+y +++ l  dv++ ++  + vaL+G nG GkstL++l+   ++ ++ge++    +++   +++   +l    +         v   ++y a  h +++ + +++i++al ++gl+ +++ + +++L+GG++ rv  +   l + +lLLlDe+t  LD+e+ + lv+++++       +vL  th v  +++  +++ v++  kv 
  MMETSP1137-20121227|8395_1 397 LAVDNVSFHYENQEDLfTDVDFGLNMDSRVALVGANGTGKSTLLKLMLSELTPTRGEVRQSrSCKIGVYNQHSCDQLAAGMRL----AKGEVLSPVSYLA--HTFPSMS-TQEIRNALGKFGLEGHHHLQaIETLSGGQKSRVVFVELGLRRCHLLLLDEPTNHLDLETVDCLVKALHAFE----GGVLVITHNVSLINKVcNQIWVIEDRKVN 599
                 789*******987755389**************************99888889999986421333333333333333332222....1234566677776..6777765.568**********998875549**************************************99999998876....47788899888887642667777776664 PP

>> TIGR03608  L_ocin_972_ABC: putative bacteriocin export ABC transporter, lactococcin 972 group
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   0.0   2.1e-06   0.00014       8      51 ..      16      59 ..      11      81 .. 0.86
   2 !   30.6   0.0   6.9e-10   4.6e-08     114     196 ..     187     267 ..     177     277 .. 0.81
   3 !   17.1   0.0   9.3e-06   0.00062       3      55 ..     401     454 ..     399     472 .. 0.81
   4 !   43.1   0.0     1e-13   6.7e-12     112     202 ..     500     589 ..     490     593 .. 0.84

  Alignments for each domain:
  == domain 1    score: 19.2 bits;  conditional E-value: 2.1e-06
   TIGR03608  8 fkdkeilkklslkiekGelvaivGesGsGKstlLnilgllekkd 51
                 + k+++++ +l++ +G+ + ++G  G+GKst++  +g+ e ++
  MMETSP1137-20121227|8395_1 16 RGGKTLFHDAKLSLIHGRRYGLIGPNGCGKSTVMHAIGTGEVEE 59
                56799********************************9877655 PP

  == domain 2    score: 30.6 bits;  conditional E-value: 6.9e-10
   TIGR03608 114 kkkevlekvgl.ekklkkkiyelsgGekqRvalarillkeselilADEPtgsLDkknreevlellkelkeegktiiivtHdpev 196
                 +   +l  +++ e++++     +sgG + R++lar+l+ +++l+l DEPt  LD +   +v+ l   l++  +t+++v Hd   
  MMETSP1137-20121227|8395_1 187 RASAILSGLQFlEEQKNWPTAAFSGGWRMRISLARALFVKPRLLLLDEPTNHLDLH---AVIWLEGYLQKWKHTLVVVSHDRDF 267
                 5556666666546777778889********************************75...67877788888899*******9864 PP

  == domain 3    score: 17.1 bits;  conditional E-value: 9.3e-06
   TIGR03608   3 niskkfkdk.eilkklslkiekGelvaivGesGsGKstlLnilgllekkdsgkv 55 
                 n+s +++++  +++++++ ++  + va+vG  G+GKstlL ++    ++ +g+v
  MMETSP1137-20121227|8395_1 401 NVSFHYENQeDLFTDVDFGLNMDSRVALVGANGTGKSTLLKLMLSELTPTRGEV 454
                 6777776653799***************************98866666666666 PP

  == domain 4    score: 43.1 bits;  conditional E-value: 1e-13
   TIGR03608 112 ekkkkevlekvgl.ekklkkkiyelsgGekqRvalarillkeselilADEPtgsLDkknreevlellkelkeegktiiivtHdpevaek.adr 202
                 ++++ ++l k+gl  ++  + i +lsgG+k Rv  + + l+ ++l+l DEPt  LD ++ + +++ l+  +     ++++tH+ ++ +k +++
  MMETSP1137-20121227|8395_1 500 TQEIRNALGKFGLeGHHHLQAIETLSGGQKSRVVFVELGLRRCHLLLLDEPTNHLDLETVDCLVKALHAFEG---GVLVITHNVSLINKvCNQ 589
                 5778899******55667799********************************************9998753...47888***9876651554 PP

>> TIGR01188  drrA: daunorubicin resistance ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   0.0   9.1e-05    0.0061      13      64 ..      26      77 ..      19     114 .. 0.75
   2 !   45.1   0.0   2.6e-14   1.7e-12      91     230 ..     174     311 ..     164     355 .. 0.77
   3 !   52.7   0.7   1.2e-16   8.3e-15      10     268 ..     414     665 ..     405     700 .. 0.72

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 9.1e-05
   TIGR01188 13 nlkveegevfglLGPnGAGKtttikmLttllkPdsGtarvaGyDvvrepdev 64
                +l++ +g  +gl+GPnG GK+t+++ + t    +  +a+  G D++   +ev
  MMETSP1137-20121227|8395_1 26 KLSLIHGRRYGLIGPNGCGKSTVMHAIGTGEVEEIRNAIPPGMDILLVEQEV 77
                677788999**************99887766666666666666665555555 PP

  == domain 2    score: 45.1 bits;  conditional E-value: 2.6e-14
   TIGR01188  91 gelyglpkkeaeeraeellelve.lkeaadkkvktysgGmrrrlelaasliaqPevlfLDEPtiGLDprtrraiwdlieelkkegvtilltthyleeadkladrvaiidkGkiiaedtpeeLKervgkevveverrdikel 230
                  el ++  + ae+ra+ +l  ++ l e+++ +   +sgG r r++la++l ++P++l LDEPt  LD ++  +iw     l+k ++t+++ +h+ +   +++  +    + k++   +  e+ e+v +  +e  +++ +  
  MMETSP1137-20121227|8395_1 174 DELADIGADSAEQRASAILSGLQfLEEQKNWPTAAFSGGWRMRISLARALFVKPRLLLLDEPTNHLDLHA--VIWLE-GYLQKWKHTLVVVSHDRDFLTTVCTDILHCWRSKLVHYAGNYEVFEKVFASKLEEYNKEYERQ 311
                 57889999************9993456677899**********************************975..66643.45666789********99999999999999999999998888888877776666333333222 PP

  == domain 3    score: 52.7 bits;  conditional E-value: 1.2e-16
   TIGR01188  10 dgvnlkveegevfglLGPnGAGKtttikmLttllkPdsGtarvaGyDvvrepdevRrsigvvpq....kasvdedLtarenlellgelyglpkkeaeeraeellelvelk.eaadkkvktysgGmrrrlelaasliaqPevlfLDEPtiGLDprtrraiwdlieelkkegvtilltthyleeadkladrvaiidkGkiiae.dtpeeLKervgkevveverrdikelkkevsllaaelteslleleavevdsdkvklkveeadet 268
                  +v++ ++ ++ ++l+G nG GK+t++k++ + l+P+ G++        r++++   +igv  q    + ++   L+  e l  ++ l     ++  + +++ l  + l  +   + ++t+sgG++ r+  +   + + ++l LDEPt  LD +t +    l+++l+  +  +l+ th++  ++k+++++ +i+  k+  + +  ee ++ + ++   +  +d +  k e+++ aa   + ++ + ++  ++ k k + e++ ++
  MMETSP1137-20121227|8395_1 414 TDVDFGLNMDSRVALVGANGTGKSTLLKLMLSELTPTRGEV--------RQSRSC--KIGVYNQhscdQLAAGMRLAKGEVLSPVSYLAHTFPSMSTQEIRNALGKFGLEgHHHLQAIETLSGGQKSRVVFVELGLRRCHLLLLDEPTNHLDLETVD---CLVKALHAFEGGVLVITHNVSLINKVCNQIWVIEDRKVNRFaGEFEEYRDMLAEQLNLLYDEDPEVKKRERERAAAAALKAEDAALEADPSKPKSKAQRERERKE 665
                 689999999******************************95........566654..57766651111456677888889999999999999999999***********82556689****************99*****************99865...567888888899*************************99862677888886666655444444433333333333333332223333333333333222222222 PP

>> TIGR02315  ABC_phnC: phosphonate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.8   0.0   0.00019     0.013      14      49 ..      18      53 ..      12      92 .. 0.76
   2 !   31.7   0.0   3.1e-10   2.1e-08     122     237 ..     184     296 ..     169     301 .. 0.81
   3 !   53.4   0.0   7.6e-17   5.1e-15       1     224 [.     396     598 ..     396     620 .. 0.76

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 0.00019
   TIGR02315 14 gkqalknvnleikkGelvaviGlsGaGkstllrsin 49
                gk+ +++ +l++ +G   ++iG+ G Gkst++++i 
  MMETSP1137-20121227|8395_1 18 GKTLFHDAKLSLIHGRRYGLIGPNGCGKSTVMHAIG 53
                6788999*************************9985 PP

  == domain 2    score: 31.7 bits;  conditional E-value: 3.1e-10
   TIGR02315 122 dkekAlelLervg.laelaakradqLsGGqqqRvaiaRalaqqpklilaDEPiasLDpksskqvmdllkrinkekgitvivnlHqvdlakkyadrivglkageivfdgasselddev 237
                  +++A ++L+ ++ l+e+++  + + sGG + R+++aRal  +p+l+l DEP+  LD ++   +  +l    ++ + t +v  H+ d+ +  ++ i+    +++v+++   e+ ++v
  MMETSP1137-20121227|8395_1 184 AEQRASAILSGLQfLEEQKNWPTAAFSGGWRMRISLARALFVKPRLLLLDEPTNHLDLHAVIWLEGYL----QKWKHTLVVVSHDRDFLTTVCTDILHCWRSKLVHYAGNYEVFEKV 296
                 5678888999888345566677899********************************87765544444....566678888889999999999999999999998887777766665 PP

  == domain 3    score: 53.4 bits;  conditional E-value: 7.6e-17
   TIGR02315   1 llevenlskvypngkqalknvnleikkGelvaviGlsGaGkstllrsinrlveissgsillegkevtklkkkelrklrkkigmifqeynlierltvlenvLsgrlgakstlksllglfseedkekAlelLervglaelaa.kradqLsGGqqqRvaiaRalaqqpklilaDEPiasLDpksskqvmdllkrinkekgitvivnlHqvdlakkyadrivglkagei 224
                 +l v+n+s +y+n++  + +v++ ++    va++G  G+Gkstll+ +    ++++g++  +                 kig+  q+    ++l +   + +g +   s +  l ++f++  +++  ++L ++gl+ +++ +  ++LsGGq+ Rv      +++ +l+l DEP+  LD ++   ++++l+    e    v+v  H+v+l +k +++i  +++ ++
  MMETSP1137-20121227|8395_1 396 ILAVDNVSFHYENQEDLFTDVDFGLNMDSRVALVGANGTGKSTLLKLMLSELTPTRGEVRQSR--------------SCKIGVYNQHS--CDQLAAGMRLAKGEV--LSPVSYLAHTFPSMSTQEIRNALGKFGLEGHHHlQAIETLSGGQKSRVVFVELGLRRCHLLLLDEPTNHLDLETVDCLVKALHAF--EG--GVLVITHNVSLINKVCNQIWVIEDRKV 598
                 689*******************************************87666667776654322..............22344443432..233333333333333..2345566788888999999999******98766156799**************9********************99999988765..33..456667*************99998887 PP

>> TIGR01842  type_I_sec_PrtD: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.4   0.0    0.0043      0.29     331     364 ..      19      52 ..      11      66 .. 0.85
   2 !   36.6   0.0   6.2e-12   4.1e-10     453     524 ..     207     276 ..     204     296 .. 0.76
   3 !   30.4   0.0   4.6e-10   3.1e-08     296     377 ..     372     456 ..     367     473 .. 0.85
   4 !   31.4   0.0   2.4e-10   1.6e-08     453     535 ..     522     602 ..     517     612 .. 0.90

  Alignments for each domain:
  == domain 1    score: 7.4 bits;  conditional E-value: 0.0043
   TIGR01842 331 kktlkgisfalkaGealaiiGpsgsGkssLarll 364
                 k+ +++ +++l  G   ++iGp g Gks++++ +
  MMETSP1137-20121227|8395_1  19 KTLFHDAKLSLIHGRRYGLIGPNGCGKSTVMHAI 52 
                 6778999**********************98876 PP

  == domain 2    score: 36.6 bits;  conditional E-value: 6.2e-12
   TIGR01842 453 aaLsgGqrqRiaLaRalygdPklvvLDePnanLDeeGeqalakalkelkarkitvvvithrpsllelv.dkil 524
                 aa sgG r Ri+LaRal+ +P+l++LDeP   LD +  + l      l++ k t vv++h    l++v   il
  MMETSP1137-20121227|8395_1 207 AAFSGGWRMRISLARALFVKPRLLLLDEPTNHLDLHAVIWLEG---YLQKWKHTLVVVSHDRDFLTTVcTDIL 276
                 578*******************************986666665...566777899999997776665414555 PP

  == domain 3    score: 30.4 bits;  conditional E-value: 4.6e-10
   TIGR01842 296 elleelpareealklPepeg....elevenvslvppeekkktlkgisfalkaGealaiiGpsgsGkssLarllvGvwlpasGsvrl 377
                 ell+++++++ ++++P         l+v+nvs+   +++ + +++++f l+  + +a++G+ g+Gks+L +l++   +p++G+vr 
  MMETSP1137-20121227|8395_1 372 ELLDQIKSNNMHIHFPVAGEiampILAVDNVSFHYENQE-DLFTDVDFGLNMDSRVALVGANGTGKSTLLKLMLSELTPTRGEVRQ 456
                 899999999999999975431222589999999776665.99******************************************95 PP

  == domain 4    score: 31.4 bits;  conditional E-value: 2.4e-10
   TIGR01842 453 aaLsgGqrqRiaLaRalygdPklvvLDePnanLDeeGeqalakalkelkarkitvvvithrpsllelv.dkilvlkdGalkafG 535
                 ++LsgGq+ R+       +  +l++LDeP   LD e    l+kal++    +  v+vith +sl++ v ++i v++d ++++f 
  MMETSP1137-20121227|8395_1 522 ETLSGGQKSRVVFVELGLRRCHLLLLDEPTNHLDLETVDCLVKALHAF---EGGVLVITHNVSLINKVcNQIWVIEDRKVNRFA 602
                 69****************************************999766...6789**********865499********99984 PP

>> TIGR00960  3a0501s02: type II secretory pathway family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   0.0     0.039       2.6      20      50 ..      23      53 ..      15      71 .. 0.82
   2 !   37.1   0.0   8.5e-12   5.7e-10     111     211 ..     180     278 ..     172     283 .. 0.86
   3 !   61.0   0.0   4.4e-19   2.9e-17       3     212 ..     398     594 ..     396     598 .. 0.81

  Alignments for each domain:
  == domain 1    score: 5.5 bits;  conditional E-value: 0.039
   TIGR00960 20 dnvtvkiekGelvflvGhsGaGkstllklil 50
                ++ ++++ +G    l+G+ G+Gkst+++ i 
  MMETSP1137-20121227|8395_1 23 HDAKLSLIHGRRYGLIGPNGCGKSTVMHAIG 53
                56667777888888*************9885 PP

  == domain 2    score: 37.1 bits;  conditional E-value: 8.5e-12
   TIGR00960 111 kgreieervsaalekvGlkdkakalPv.qlsgGeqqrvaiaravvnkPallladePtgnlddelsrdilelleevnraGttvlvathdenlveskrkrvltl 211
                  ++ +e+r+sa l  + + + +k+ P+  +sgG + r+++ara+  kP lll dePt  ld +    ++ l   +++   t++v +hd++++ +    +l+ 
  MMETSP1137-20121227|8395_1 180 GADSAEQRASAILSGLQFLEEQKNWPTaAFSGGWRMRISLARALFVKPRLLLLDEPTNHLDLHA---VIWLEGYLQKWKHTLVVVSHDRDFLTTVCTDILHC 278
                 467899********9999999999996369*******************************864...6777777888889***********99998888765 PP

  == domain 3    score: 61.0 bits;  conditional E-value: 4.4e-19
   TIGR00960   3 kfeqvskaykgaaelaldnvtvkiekGelvflvGhsGaGkstllklilgiekpsaGkirvsgq.dltklrdrevpflrrqiGivfqdfkllsdrtvydnvalalriiGvkgreieervsaalekvGlkdkakalP.vqlsgGeqqrvaiaravvnkPallladePtgnlddelsrdilelleevnraGttvlvathdenlveskrkrvltls 212
                  +++vs +y+  ++  + +v + ++  + v lvG  G+Gkstllkl+l+  +p++G++r s   +++ ++++    l    G+       l + +v+  v     ++ + +    + +++al k Gl+++++     +lsgG++ rv      +++ +lll dePt  ld e+   ++   + ++     vlv th+ +l+++  +++ +++
  MMETSP1137-20121227|8395_1 398 AVDNVSFHYENQED-LFTDVDFGLNMDSRVALVGANGTGKSTLLKLMLSELTPTRGEVRQSRScKIGVYNQHSCDQLAA--GM------RLAKGEVLSPVSY---LAHTFPSMSTQEIRNALGKFGLEGHHHLQAiETLSGGQKSRVVFVELGLRRCHLLLLDEPTNHLDLETVDCLV---KALHAFEGGVLVITHNVSLINKVCNQIWVIE 594
                 6799*****99988.899****************************************988642777777777777754..43......3455566666653...344455566667789********9988665168********************************99877655...555555668999*********9988887665 PP

>> TIGR03797  NHLM_micro_ABC2: NHLM bacteriocin system ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.0   0.0    0.0028      0.19     459     497 ..      12      50 ..       7      55 .. 0.90
   2 !   28.9   0.0   1.3e-09   8.9e-08     588     644 ..     208     264 ..     205     295 .. 0.84
   3 !   34.8   0.0   2.2e-11   1.5e-09     452     510 ..     397     454 ..     388     459 .. 0.93
   4 !   33.0   0.0   7.4e-11     5e-09     586     670 ..     521     607 ..     512     614 .. 0.92

  Alignments for each domain:
  == domain 1    score: 8.0 bits;  conditional E-value: 0.0028
   TIGR03797 459 FrYekdgplvLddvslkiepGefvaivGaSGsGKStllr 497
                 F  ++ g++ ++d  l+   G   +++G+ G+GKSt++ 
  MMETSP1137-20121227|8395_1  12 FSISRGGKTLFHDAKLSLIHGRRYGLIGPNGCGKSTVMH 50 
                 667788999999999999*******************96 PP

  == domain 2    score: 28.9 bits;  conditional E-value: 1.3e-09
   TIGR03797 588 tlSGGQrQRlliAralvrkPrillfDEATSALDNrtQaiVsesleklkvtRiviAHR 644
                 + SGG r R+ +Aral  kPr+ll+DE T  LD ++       l+k k t +v+ H 
  MMETSP1137-20121227|8395_1 208 AFSGGWRMRISLARALFVKPRLLLLDEPTNHLDLHAVIWLEGYLQKWKHTLVVVSHD 264
                 68******************************************************4 PP

  == domain 3    score: 34.8 bits;  conditional E-value: 2.2e-11
   TIGR03797 452 ievdrvtFrYekdgplvLddvslkiepGefvaivGaSGsGKStllrlLLgFekPesGsv 510
                 ++vd+v+F+Y ++++  + dv +  +    va+vGa G+GKStll+l+L+  +P+ G+v
  MMETSP1137-20121227|8395_1 397 LAVDNVSFHY-ENQEDLFTDVDFGLNMDSRVALVGANGTGKSTLLKLMLSELTPTRGEV 454
                 579*******.778899****************************************98 PP

  == domain 4    score: 33.0 bits;  conditional E-value: 7.4e-11
   TIGR03797 586 ggtlSGGQrQRlliAralvrkPrillfDEATSALDNrtQaiVsesleklkvtRiviAHRLSTirn.adrilvleeGrvve.qGsyee 670
                  +tlSGGQ+ R++      r+ ++ll+DE T  LD +t  + +++l++++   +vi H +S i++ +++i v+e+ +v    G++ee
  MMETSP1137-20121227|8395_1 521 IETLSGGQKSRVVFVELGLRRCHLLLLDEPTNHLDLETVDCLVKALHAFEGGVLVITHNVSLINKvCNQIWVIEDRKVNRfAGEFEE 607
                 589************************************************************8659********999864677776 PP

>> TIGR02868  CydC: thiol reductant ABC exporter, CydC subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.8   0.0   0.00022     0.015     349     381 ..      20      52 ..       6      60 .. 0.86
   2 !   37.4   0.0   3.7e-12   2.5e-10     470     510 ..     207     247 ..     199     265 .. 0.81
   3 !   72.7   0.1   7.6e-23   5.1e-21     325     529 ..     389     579 ..     371     580 .. 0.76
   4 ?   -2.0   0.5       3.4   2.3e+02     191     229 ..     795     833 ..     749     857 .. 0.52

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 0.00022
   TIGR02868 349 evlkgvsldlepGervavvGasGaGKstLlall 381
                 + +++ +l l  G+r  ++G+ G+GKst+++++
  MMETSP1137-20121227|8395_1  20 TLFHDAKLSLIHGRRYGLIGPNGCGKSTVMHAI 52 
                 46788899********************99876 PP

  == domain 2    score: 37.4 bits;  conditional E-value: 3.7e-12
   TIGR02868 470 arlSGGerqRlalARaLladapvllLDEPtehLDaeteeel 510
                 a++SGG r R+ lARaL  + ++llLDEPt hLD ++   l
  MMETSP1137-20121227|8395_1 207 AAFSGGWRMRISLARALFVKPRLLLLDEPTNHLDLHAVIWL 247
                 78********************************9876554 PP

  == domain 3    score: 72.7 bits;  conditional E-value: 7.6e-23
   TIGR02868 325 aeaaasekptlelrdlsvsypgaeevlkgvsldlepGervavvGasGaGKstLlallaglldplkGevtldgvsvaslsesevrrvvsvlaqdaHlFdttvreNlrlarpda..............tdeellaaLervgLadwlraLpdGldtklgeggarlSGGerqRlalARaLladapvllLDEPtehLDaeteeelledLlaaeegrtvvlvthr 529
                 a++ a   p l + ++s++y+++e  +++v++ l+  +rva+vGa G+GKstLl+l++  l p +Gev  +    +          + v +q+      ++   +rla++++              + +e+ +aL + gL+ + +           +  ++lSGG++ R+++    l    +llLDEPt hLD et + l+++L a e g  v+++th+
  MMETSP1137-20121227|8395_1 389 AGEIA--MPILAVDNVSFHYENQEDLFTDVDFGLNMDSRVALVGANGTGKSTLLKLMLSELTPTRGEVRQSR--SC---------KIGVYNQHS---CDQLAAGMRLAKGEVlspvsylahtfpsmSTQEIRNALGKFGLEGHHHL----------QAIETLSGGQKSRVVFVELGLRRCHLLLLDEPTNHLDLETVDCLVKALHAFEGG--VLVITHN 579
                 44444..48999********************************************************9443..22.........344444433...2344455555555554422222222233377777777777777766554..........34578*******************************************998766..8999997 PP

  == domain 4    score: -2.0 bits;  conditional E-value: 3.4
   TIGR02868 191 elaaqlldllegaaelvvaGa...leavlaqveeaereltra 229
                 + +    ++ + +a l+va a   ++a+ ++v++a+rel+ra
  MMETSP1137-20121227|8395_1 795 AAR---HSAASRRAALRVADAarlAAAAYDDVQAAQRELLRA 833
                 222...122222233333222000233444444444444444 PP

>> TIGR02211  LolD_lipo_ex: lipoprotein releasing system, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.8   0.0    0.0017      0.11      19      53 ..      20      54 ..       8      76 .. 0.89
   2 !   42.6   0.0   1.6e-13     1e-11     116     207 ..     182     270 ..     176     284 .. 0.82
   3 !   22.9   0.0   1.7e-07   1.1e-05      10      63 ..     405     455 ..     396     468 .. 0.85
   4 !   26.4   0.0   1.4e-08   9.7e-07     119     213 ..     500     591 ..     484     599 .. 0.79

  Alignments for each domain:
  == domain 1    score: 9.8 bits;  conditional E-value: 0.0017
   TIGR02211 19 evlkgvsleiekgelvaivGssGsGkstllhllgg 53
                +++++ +l++ +g   +++G  G Gkst++h +g+
  MMETSP1137-20121227|8395_1 20 TLFHDAKLSLIHGRRYGLIGPNGCGKSTVMHAIGT 54
                5789999************************9986 PP

  == domain 2    score: 42.6 bits;  conditional E-value: 1.6e-13
   TIGR02211 116 keakerakellekvg.lekrinkkpselsGGerqrvaiaralvnkPklvladePtgnldkktakkifelllelnkekntallvvthdlelakk 207
                  +a++ra ++l+ ++ le++ n  ++++sGG r r+++aral  kP+l+l dePt +ld ++      l   l ++ + +l+vv+hd+++   
  MMETSP1137-20121227|8395_1 182 DSAEQRASAILSGLQfLEEQKNWPTAAFSGGWRMRISLARALFVKPRLLLLDEPTNHLDLHAVI---WLEGYL-QKWKHTLVVVSHDRDFLTT 270
                 67999*******998467777888889********************************98644...344444.4456679******998765 PP

  == domain 3    score: 22.9 bits;  conditional E-value: 1.7e-07
   TIGR02211  10 sykegkleievlkgvsleiekgelvaivGssGsGkstllhllggldkptsGevl 63 
                 +y+   ++ +++++v++ ++    va+vG+ G+Gkstll l+ +  +pt Gev 
  MMETSP1137-20121227|8395_1 405 HYE---NQEDLFTDVDFGLNMDSRVALVGANGTGKSTLLKLMLSELTPTRGEVR 455
                 443...4568999***************************9988889****996 PP

  == domain 4    score: 26.4 bits;  conditional E-value: 1.4e-08
   TIGR02211 119 kerakellekvglekrinkkp.selsGGerqrvaiaralvnkPklvladePtgnldkktakkifelllelnkekntallvvthdlelakkldrvle 213
                  ++  + l k+gle + + ++   lsGG++ rv      + + +l+l dePt +ld +t +    l++ l+ + + ++lv+th+ +l++k+ +++ 
  MMETSP1137-20121227|8395_1 500 TQEIRNALGKFGLEGHHHLQAiETLSGGQKSRVVFVELGLRRCHLLLLDEPTNHLDLETVDC---LVKALH-AFEGGVLVITHNVSLINKVCNQIW 591
                 455667789999987766665156*************99*****************998765...555554.4567899**********9877664 PP

>> TIGR00972  3a0107s01c2: phosphate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0   3.3e-05    0.0022       6      48 ..      11      53 ..       7      90 .. 0.76
   2 !   46.7   0.0     8e-15   5.4e-13     141     242 ..     205     304 ..     182     308 .. 0.90
   3 !   16.0   0.0   1.8e-05    0.0012       2      47 ..     397     443 ..     396     467 .. 0.86
   4 !   22.8   0.0   1.6e-07   1.1e-05     143     218 ..     522     595 ..     502     612 .. 0.82

  Alignments for each domain:
  == domain 1    score: 15.2 bits;  conditional E-value: 3.3e-05
   TIGR00972  6 nlklfygekealkdvnleikknkvtaliGpsGcGkstllrsln 48
                +++++ g k+  +d +l++ + +  +liGp GcGkst+++++ 
  MMETSP1137-20121227|8395_1 11 KFSISRGGKTLFHDAKLSLIHGRRYGLIGPNGCGKSTVMHAIG 53
                566777888889999999999999***************9985 PP

  == domain 2    score: 46.7 bits;  conditional E-value: 8e-15
   TIGR00972 141 salsLsGGqqqrlciaralavePevlLlDePtsaLDpiatekieeliqeLkkkytivivthnmqqaarvsdktaffleGelveegeteqifekpkekktedy 242
                  + + sGG + r+++aral v+P +lLlDePt  LD  a+  +e  +q+ k   t+v+v h+ ++ + v   +   ++ +lv ++   ++fek   +k e+y
  MMETSP1137-20121227|8395_1 205 PTAAFSGGWRMRISLARALFVKPRLLLLDEPTNHLDLHAVIWLEGYLQKWK--HTLVVVSHDRDFLTTVCTDILHCWRSKLVHYAGNYEVFEKVFASKLEEY 304
                 56789******************************************9765..79*************************************9998888888 PP

  == domain 3    score: 16.0 bits;  conditional E-value: 1.8e-05
   TIGR00972   2 levknlklfygekeal.kdvnleikknkvtaliGpsGcGkstllrsl 47 
                 l+v n+++ y ++e l +dv++ ++ ++ +al+G  G+Gkstll+ +
  MMETSP1137-20121227|8395_1 397 LAVDNVSFHYENQEDLfTDVDFGLNMDSRVALVGANGTGKSTLLKLM 443
                 678999****998855279*************************975 PP

  == domain 4    score: 22.8 bits;  conditional E-value: 1.6e-07
   TIGR00972 143 lsLsGGqqqrlciaralavePevlLlDePtsaLDpiatekieeliqeLkkkytivivthnmqqaarvsdktaffle 218
                  +LsGGq+ r++       + ++lLlDePt  LD +++  + + ++  +    ++++thn++  ++v +++ ++ +
  MMETSP1137-20121227|8395_1 522 ETLSGGQKSRVVFVELGLRRCHLLLLDEPTNHLDLETVDCLVKALHAFE--GGVLVITHNVSLINKVCNQIWVIED 595
                 58*********9998878899*************987776666666554..579999**********999887754 PP

>> TIGR02769  nickel_nikE: nickel import ATP-binding protein NikE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.2   0.0    0.0003      0.02      20      55 ..      15      50 ..       9      57 .. 0.88
   2 !   38.1   0.0   3.8e-12   2.6e-10     116     229 ..     174     283 ..     157     296 .. 0.85
   3 !   45.0   0.1   2.9e-14     2e-12      22     228 ..     408     597 ..     397     604 .. 0.84

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 0.0003
   TIGR02769 20 kkqrkavldnvslsleeGetvallGrsGaGkstlar 55
                 ++ k+++++ +lsl +G   +l+G  G+Gkst+ +
  MMETSP1137-20121227|8395_1 15 SRGGKTLFHDAKLSLIHGRRYGLIGPNGCGKSTVMH 50
                56778999*************************865 PP

  == domain 2    score: 38.1 bits;  conditional E-value: 3.8e-12
   TIGR02769 116 rhltsldeserkariaellelvelrsevldklPrqlsGGqlqriniaralavePklivldeavsnldlvlqasilellkklkqefGlaylfithdlrlvqkfaqrvlvldeGqi 229
                  +l ++ +   ++r++++l+ +++ +e+ +   + +sGG   ri++aral v+P+l++lde    ldl+  +     l+   q+   + ++++hd     +++  +l   + ++
  MMETSP1137-20121227|8395_1 174 DELADIGADSAEQRASAILSGLQFLEEQKNWPTAAFSGGWRMRISLARALFVKPRLLLLDEPTNHLDLHAVI----WLEGYLQKWKHTLVVVSHDRDFLTTVCTDILHCWRSKL 283
                 5677788888999************999999999*********************************98644....455555566678999****9999999998876655555 PP

  == domain 3    score: 45.0 bits;  conditional E-value: 2.9e-14
   TIGR02769  22 qrkavldnvslsleeGetvallGrsGaGkstlarlllGlekPakGevsfrGqdlakldrkqrkafrrdvqlvfqdsisavnprks.vreiigePlrhltsldeserkariaellelvelrsevldklPrqlsGGqlqriniaralavePklivldeavsnldlvlqasilellkklkqefGlaylfithdlrlvqkfaqrvlvldeGq 228
                 +++ ++++v++ l+    val+G  G+Gkstl +l+l    P++Gev+              ++   ++ +  q s   + + +  ++  +  P+  l +   s   + i + l + +l+ ++  +  + lsGGq  r+        + +l++lde    ldl     +++ l+++       +l+ith+++l++k+++++ v+++ +
  MMETSP1137-20121227|8395_1 408 NQEDLFTDVDFGLNMDSRVALVGANGTGKSTLLKLMLSELTPTRGEVRQ------------SRSC--KIGVYNQHSCDQLAAGMRlAKGEVLSPVSYLAHTFPSMSTQEIRNALGKFGLEGHHHLQAIETLSGGQKSRVVFVELGLRRCHLLLLDEPTNHLDLETVDCLVKALHAF----EGGVLVITHNVSLINKVCNQIWVIEDRK 597
                 5677899***************************************963............3333..46667777777777655414556788*****999999***********************************9998888899*************98766655555443....336799*****************99865 PP

>> TIGR03796  NHLM_micro_ABC1: NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0     2e-05    0.0013     484     525 ..      11      52 ..       1      60 [. 0.89
   2 !   31.1   0.0   2.3e-10   1.5e-08     614     671 ..     207     264 ..     186     291 .. 0.90
   3 !   54.0   0.1   2.7e-17   1.8e-15     479     690 ..     398     599 ..     369     613 .. 0.85

  Alignments for each domain:
  == domain 1    score: 14.8 bits;  conditional E-value: 2e-05
   TIGR03796 484 tfgysaleapliedfslslkpGqrvAlvGgsGsGkstiaklv 525
                 +f+ s+  + l +d +lsl +G+r  l+G+ G+Gkst+ + +
  MMETSP1137-20121227|8395_1  11 KFSISRGGKTLFHDAKLSLIHGRRYGLIGPNGCGKSTVMHAI 52 
                 689999999****************************98655 PP

  == domain 2    score: 31.1 bits;  conditional E-value: 2.3e-10
   TIGR03796 614 anlsGGqrqRleiARaLvknPsiLilDEatsaLDaetEkaidenlrrRgctciivaHR 671
                 a +sGG r R+ +ARaL  +P +L+lDE t  LD ++   ++  l++   t ++v+H 
  MMETSP1137-20121227|8395_1 207 AAFSGGWRMRISLARALFVKPRLLLLDEPTNHLDLHAVIWLEGYLQKWKHTLVVVSHD 264
                 679******************************************************4 PP

  == domain 3    score: 54.0 bits;  conditional E-value: 2.7e-17
   TIGR03796 479 elrnvtfgysaleapliedfslslkpGqrvAlvGgsGsGkstiaklvaGlyepwsGeilfDgkpreeiprevlanslalvdqdivlfegtvrdnltlwdetipeedlvrAakDAaihdvilarpggyeaelaegganlsGGqrqRleiARaLvknPsiLilDEatsaLDaetEkaidenlrrRgctciivaHRLstiRd.cdeiivlerGkvv 690
                  ++nv+f y+++ + l  d+++ l+  +rvAlvG+ G+Gkst+ kl+    +p++Ge++     +  + ++     la     + l +g v   ++   +t p+ +         i++++ +   + +++l +  + lsGGq+ R+       ++  +L+lDE t  LD et   ++++l+     +++++H +s i   c++i v+e  kv 
  MMETSP1137-20121227|8395_1 398 AVDNVSFHYENQ-EDLFTDVDFGLNMDSRVALVGANGTGKSTLLKLMLSELTPTRGEVRQSRSCKIGVYNQHSCDQLA---AGMRLAKGEVLSPVSYLAHTFPSMSTQ------EIRNALGKFGLEGHHHL-QAIETLSGGQKSRVVFVELGLRRCHLLLLDEPTNHLDLETVDCLVKALHAFEGGVLVITHNVSLINKvCNQIWVIEDRKVN 599
                 578******987.789******************************************98777777776666555555...6899****************9987654......34444444433333333.44567************999*********************************************6549*******99885 PP

>> TIGR03740  galliderm_ABC: lantibiotic protection ABC transporter, ATP-binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0   1.4e-05   0.00094      13      47 ..      19      54 ..      10      65 .. 0.82
   2 !   27.1   0.0   9.4e-09   6.3e-07     103     171 ..     186     255 ..     179     278 .. 0.79
   3 !   49.3   0.0   1.6e-15   1.1e-13       1     203 [.     397     599 ..     397     617 .. 0.81

  Alignments for each domain:
  == domain 1    score: 16.7 bits;  conditional E-value: 1.4e-05
   TIGR03740 13 qavvnnvslkvkknsvygllGpnGaGkstllkll.t 47
                +++ ++ +l++ + + ygl+GpnG+Gkst++  + t
  MMETSP1137-20121227|8395_1 19 KTLFHDAKLSLIHGRRYGLIGPNGCGKSTVMHAIgT 54
                5667778889999999***************97734 PP

  == domain 2    score: 27.1 bits;  conditional E-value: 9.4e-09
   TIGR03740 103 srieevlkivd.lentekkkakqfslGmkqrlGiaiallnkPkllildePtnGldPlGiqelreliksfp 171
                 +r + +l+ ++ le+++   +  fs G + r+ +a al+ kP+ll+ldePtn ld   +  l   ++ ++
  MMETSP1137-20121227|8395_1 186 QRASAILSGLQfLEEQKNWPTAAFSGGWRMRISLARALFVKPRLLLLDEPTNHLDLHAVIWLEGYLQKWK 255
                 55666666666245556668999********************************888777766666655 PP

  == domain 3    score: 49.3 bits;  conditional E-value: 1.6e-15
   TIGR03740   1 letknlskkfkkqa.vvnnvslkvkknsvygllGpnGaGkstllklltGllrktsGeilldgr.ewtrkdlkkiGsliesPalyenltarenlkvrtlllglpesrieevlkivdlentek.kkakqfslGmkqrlGiaiallnkPkllildePtnGldPlGiqelreliksfpekGitvilsshilsevelladhiGiiseGklk 203
                 l ++n+s ++++q+ +  +v++ ++ +s  +l+G nG+Gkstllkl+   l++t Ge+    + ++   + ++   l     l +         +  +  ++++++i + l + +le  +  +  + +s G k r+      l++ +ll+ldePtn ld   ++ l + +++f+  G  v++ +h +s +++++++i +i++ k++
  MMETSP1137-20121227|8395_1 397 LAVDNVSFHYENQEdLFTDVDFGLNMDSRVALVGANGTGKSTLLKLMLSELTPTRGEVRQSRScKIGVYNQHSCDQLAAGMRLAKGEVLSPVSYLAHTFPSMSTQEIRNALGKFGLEGHHHlQAIETLSGGQKSRVVFVELGLRRCHLLLLDEPTNHLDLETVDCLVKALHAFEG-G--VLVITHNVSLINKVCNQIWVIEDRKVN 599
                 568899999998862679***************************************986543255666666666666665555444333444456778899**************977661566889********999999*****************9999999999999964.4..55568****************998874 PP

>> TIGR00958  3a01208: antigen peptide transporter 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.6   0.0   0.00037     0.025     491     525 ..      16      50 ..      12      54 .. 0.88
   2 !   26.4   0.0   6.5e-09   4.4e-07     618     673 ..     209     264 ..     205     295 .. 0.79
   3 !   24.4   0.0   2.5e-08   1.7e-06     482     538 ..     400     454 ..     376     472 .. 0.88
   4 !   29.7   0.0   6.4e-10   4.3e-08     617     699 ..     523     607 ..     490     617 .. 0.89

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 0.00037
   TIGR00958 491 rpdkpvlkdLtftlepGevvalVGPsGsGKStvaa 525
                 r  k +++d  ++l  G+   l+GP+G GKStv+ 
  MMETSP1137-20121227|8395_1  16 RGGKTLFHDAKLSLIHGRRYGLIGPNGCGKSTVMH 50 
                 5667789999999********************86 PP

  == domain 2    score: 26.4 bits;  conditional E-value: 6.5e-09
   TIGR00958 618 lsgGqkqriAiARALvrkPrvLiLDeAtSALDaeveqllqesksaksrtvlliahr 673
                  sgG + ri +ARAL  kPr+L+LDe t  LD +    l+   ++ ++t++++ h 
  MMETSP1137-20121227|8395_1 209 FSGGWRMRISLARALFVKPRLLLLDEPTNHLDLHAVIWLEGYLQKWKHTLVVVSHD 264
                 79*******************************88888888666667777777774 PP

  == domain 3    score: 24.4 bits;  conditional E-value: 2.5e-08
   TIGR00958 482 qdVsFsYPsrpdkpvlkdLtftlepGevvalVGPsGsGKStvaallenlYqPtgGqv 538
                  +VsF Y ++    ++ d  f l+  + valVG +G GKSt   l+     Pt G+v
  MMETSP1137-20121227|8395_1 400 DNVSFHYENQE--DLFTDVDFGLNMDSRVALVGANGTGKSTLLKLMLSELTPTRGEV 454
                 68*****8875..689***************************************98 PP

  == domain 4    score: 29.7 bits;  conditional E-value: 6.4e-10
   TIGR00958 617 qlsgGqkqriAiARALvrkPrvLiLDeAtSALDaeveqllqesksaksrtvlliahrLstvek.adkilvlkkgsvve.lGthkq 699
                  lsgGqk r+      +r+  +L+LDe t  LD e+   l +  +a +  vl+i+h  s+++k +++i v++  +v++  G++++
  MMETSP1137-20121227|8395_1 523 TLSGGQKSRVVFVELGLRRCHLLLLDEPTNHLDLETVDCLVKALHAFEGGVLVITHNVSLINKvCNQIWVIEDRKVNRfAGEFEE 607
                 69********************************988888888888899************98679******9999873466665 PP

>> TIGR02982  heterocyst_DevA: ABC exporter ATP-binding subunit, DevA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   0.0     0.021       1.4      18      53 ..      19      54 ..      11      88 .. 0.88
   2 !   36.9   0.0   8.9e-12     6e-10     113     212 ..     179     276 ..     171     284 .. 0.77
   3 !   40.0   0.0   9.9e-13   6.6e-11       4     218 ..     399     597 ..     396     599 .. 0.74

  Alignments for each domain:
  == domain 1    score: 6.3 bits;  conditional E-value: 0.021
   TIGR02982 18 kqvlfdinleiepgeiviltGpsGsGkttlltligg 53
                k +++d +l++ +g    l Gp G+Gk t++  ig+
  MMETSP1137-20121227|8395_1 19 KTLFHDAKLSLIHGRRYGLIGPNGCGKSTVMHAIGT 54
                667789999999999999*************99996 PP

  == domain 2    score: 36.9 bits;  conditional E-value: 8.9e-12
   TIGR02982 113 lsakeakakaeelleavg.leerldykpedlsgGqkqrvaiaralvarPklvladePtaaldkksgrevvellqklareqgttillvthdnril.dvadriv 212
                 + a+ a+++a+++l+ +  lee+ +   + +sgG + r+++aral  +P+l+l dePt  ld ++   v+  l+   ++   t+++v hd   l  v+  i+
  MMETSP1137-20121227|8395_1 179 IGADSAEQRASAILSGLQfLEEQKNWPTAAFSGGWRMRISLARALFVKPRLLLLDEPTNHLDLHA---VI-WLEGYLQKWKHTLVVVSHDRDFLtTVCTDIL 276
                 466778899999999886367777777889********************************865...33.4444455556788999999876513555555 PP

  == domain 3    score: 40.0 bits;  conditional E-value: 9.9e-13
   TIGR02982   4 irelnhyygkgelrkqvlfdinleiepgeiviltGpsGsGkttlltligglrsvqeGelkvlgkelkgasekel.vqvrrkiGyifqahnllesltaeqnvrmalelkeklsakeakakaeelleavgleerldykp.edlsgGqkqrvaiaralvarPklvladePtaaldkksgrevvellqklareqgttillvthdnril.dvadrivkmedGk 218
                 + +++ +y   e+++ ++ d+++ ++ +  v l G+ G+Gk tll l+ +  +   Ge++   +   g+ +++   q+    G+ +           + +v   +   +++  + ++++ ++ l + gle +++ ++ e lsgGqk rv +      r +l+l dePt  ld ++   +v+ l+         +l++th+  ++ +v+++i  +ed k
  MMETSP1137-20121227|8395_1 399 VDNVSFHY---ENQEDLFTDVDFGLNMDSRVALVGANGTGKSTLLKLMLSELTPTRGEVRQSRSCKIGVYNQHScDQL--AAGMRLA----------KGEVLSPVSYLAHTFPSMSTQEIRNALGKFGLEGHHHLQAiETLSGGQKSRVVFVELGLRRCHLLLLDEPTNHLDLETVDCLVKALH----AFEGGVLVITHNVSLInKVCNQIWVIEDRK 597
                 55555555...4567889999999999*********************999999999998665554444443330333..3455444..........44444455555555666677788999******99887654389********************************988666666554....44567999***9765516899998888866 PP

>> TIGR03410  urea_trans_UrtE: urea ABC transporter, ATP-binding protein UrtE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.5   0.0   0.00096     0.065      11      46 ..      17      52 ..       8      64 .. 0.86
   2 ?    0.0   0.0       1.6     1e+02     181     206 ..      66      91 ..      55     109 .. 0.78
   3 !   29.9   0.0   1.1e-09   7.7e-08     110     203 ..     187     276 ..     174     300 .. 0.76
   4 !   43.1   0.0     1e-13   6.9e-12       1     211 [.     397     599 ..     397     617 .. 0.79

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 0.00096
   TIGR03410 11 gesevlrdvslevekgevvavlGrngvGkttllkal 46
                g  ++++d +l++ +g+   ++G ng Gk+t+++a+
  MMETSP1137-20121227|8395_1 17 GGKTLFHDAKLSLIHGRRYGLIGPNGCGKSTVMHAI 52
                6678899**************************998 PP

  == domain 2    score: 0.0 bits;  conditional E-value: 1.6
   TIGR03410 181 kdlaillveqvldfaleladrylvle 206
                  ++ illveq ++ + e++   +v++
  MMETSP1137-20121227|8395_1  66 PGMDILLVEQEVQASDEITALQMVVS 91 
                 4899********99999887777665 PP

  == domain 3    score: 29.9 bits;  conditional E-value: 1.1e-09
   TIGR03410 110 ipeeiyelFPvlkemlkRrgGdLsGGqqqqlaiaRaLvtePklllLDePteGiqPsiikeiekvikelakekdlaillveqvldfaleladryl 203
                     i++    l+e ++  +   sGG +  +++aRaL  +P+lllLDePt+ +    +  +e  +++ ++    ++++v +  df +++   +l
  MMETSP1137-20121227|8395_1 187 RASAILSGLQFLEEQKNWPTAAFSGGWRMRISLARALFVKPRLLLLDEPTNHLDLHAVIWLEGYLQKWKH----TLVVVSHDRDFLTTVCTDIL 276
                 555666677789999999999*****************************99887777777777666554....56666666666666666555 PP

  == domain 4    score: 43.1 bits;  conditional E-value: 1e-13
   TIGR03410   1 levenlevaYges.evlrdvslevekgevvavlGrngvGkttllkalvgllkvksGeielege...ditklkpeervkaGiayvpqGreifpkltveenlelglealkkkekkipeeiyelFPvlkemlkRrgGdLsGGqqqqlaiaRaLvtePklllLDePteGiqPsiikeiekvikelakekdlaillveqvldfaleladrylvlerGevv 211
                 l v+n++ +Y++   +++dv++ ++ ++ va++G ng+Gk+tllk +++ l+ ++Ge++ + +    + ++++ ++ +aG+    +G  +++ ++    l  ++ +++   ++ + +++  F +  + +      LsGGq+  +      + + +lllLDePt+ +    ++ + k++++ +     ++l++ +++++  ++ ++++v+e  +v 
  MMETSP1137-20121227|8395_1 397 LAVDNVSFHYENQeDLFTDVDFGLNMDSRVALVGANGTGKSTLLKLMLSELTPTRGEVRQSRSckiGVYNQHSCDQLAAGMRL-AKGE-VLSPVS---YLAHTFPSMS---TQEIRNALGKFGLEGHHHLQAIETLSGGQKSRVVFVELGLRRCHLLLLDEPTNHLDLETVDCLVKALHAFE----GGVLVITHNVSLINKVCNQIWVIEDRKVN 599
                 6799******86515789****************************************8765422246677788889999874.5664.444333...3444444444...455566778898887777788899*******************************9888877777666654....4899*******************987775 PP

>> TIGR03771  anch_rpt_ABC: anchored repeat-type ABC transporter, ATP-binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.5   0.0    0.0011     0.076       4      26 ..      30      52 ..      27      63 .. 0.86
   2 !   32.6   0.0     2e-10   1.4e-08     103     181 ..     198     273 ..     181     285 .. 0.84
   3 !   45.0   0.4   3.3e-14   2.2e-12       8     191 ..     425     598 ..     418     611 .. 0.82

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 0.0011
   TIGR03771  4 dkGellgllGpnGaGkttllrai 26
                 +G   gl+GpnG Gk+t++ ai
  MMETSP1137-20121227|8395_1 30 IHGRRYGLIGPNGCGKSTVMHAI 52
                5677889*************998 PP

  == domain 2    score: 32.6 bits;  conditional E-value: 2e-10
   TIGR03771 103 lteladrpvGelsGGqrqrvlvaralavkpslllldepftGldlpsqellvelfeelagegtailmtthdlaeavatcd 181
                 l+e ++ p   +sGG r r+ +aral vkp+lllldep   ldl +   l + +++    ++++++++hd     ++c 
  MMETSP1137-20121227|8395_1 198 LEEQKNWPTAAFSGGWRMRISLARALFVKPRLLLLDEPTNHLDLHAVIWLEGYLQK---WKHTLVVVSHDRDFLTTVCT 273
                 56778889999*********************************999999887765...57889999998776666665 PP

  == domain 3    score: 45.0 bits;  conditional E-value: 3.3e-14
   TIGR03771   8 llgllGpnGaGkttllrailglikvakGsvkvagkssrkgrreiGyvpqrhefawdfpidv.eqtvlsGragliGllrrpkkadfaavadalervklt.eladrpvGelsGGqrqrvlvaralavkpslllldepftGldlpsqellvelfeelagegtailmtthdlaeavatcdrvvllngrvv 191
                  ++l+G nG+Gk+tll+ +l+ +++++G+v+ +        ++iG   q         + + ++ vls  + l   +   +    + +++al +  l+ +   +++  lsGGq+ rv+       + +lllldep   ldl + + lv+    l + +  +l+ th+++   ++c+++ +++ r v
  MMETSP1137-20121227|8395_1 425 RVALVGANGTGKSTLLKLMLSELTPTRGEVRQSR------SCKIGVYNQHSCDQLAAGMRLaKGEVLSPVSYLAHTFPSMS---TQEIRNALGKFGLEgHHHLQAIETLSGGQKSRVVFVELGLRRCHLLLLDEPTNHLDLETVDCLVKA---LHAFEGGVLVITHNVSLINKVCNQIWVIEDRKV 598
                 589******************9999*****9766......59999888876555555555414578888777776665544...456899******974666789************9998888899**************999998765...55567789****************998877655 PP

>> TIGR02204  MsbA_rel: ABC transporter, permease/ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.2   0.0    0.0053      0.36     356     385 ..      22      51 ..      14      54 .. 0.85
   2 !   21.3   0.0   2.9e-07   1.9e-05     476     512 ..     208     244 ..     199     278 .. 0.81
   3 !   31.7   0.0   2.1e-10   1.4e-08     338     398 ..     397     455 ..     370     467 .. 0.83
   4 !   26.8   0.0   6.4e-09   4.3e-07     476     552 ..     523     598 ..     512     613 .. 0.90
   5 ?   -3.5   0.2       9.7   6.6e+02     210     269 ..     694     753 ..     667     773 .. 0.49

  Alignments for each domain:
  == domain 1    score: 7.2 bits;  conditional E-value: 0.0053
   TIGR02204 356 ldgldltvrpGetvalvGPsGaGkstllel 385
                 +++ +l++  G++  l+GP G Gkst+++ 
  MMETSP1137-20121227|8395_1  22 FHDAKLSLIHGRRYGLIGPNGCGKSTVMHA 51 
                 5677889999*****************985 PP

  == domain 2    score: 21.3 bits;  conditional E-value: 2.9e-07
   TIGR02204 476 tLsGGqkqriaiarailkdapiLLLdeatsaLdaese 512
                  +sGG + ri++ara++ + ++LLLde t+ Ld ++ 
  MMETSP1137-20121227|8395_1 208 AFSGGWRMRISLARALFVKPRLLLLDEPTNHLDLHAV 244
                 68*******************************7654 PP

  == domain 3    score: 31.7 bits;  conditional E-value: 2.1e-10
   TIGR02204 338 iefeevkfayParpdqkaldgldltvrpGetvalvGPsGaGkstllelllrfydPqsGail 398
                 +++++v+f+y ++ d   + ++d+ ++   +valvG  G Gkstll+l+l    P++G+++
  MMETSP1137-20121227|8395_1 397 LAVDNVSFHYENQEDL--FTDVDFGLNMDSRVALVGANGTGKSTLLKLMLSELTPTRGEVR 455
                 3579*******99975..689*************************************997 PP

  == domain 4    score: 26.8 bits;  conditional E-value: 6.4e-09
   TIGR02204 476 tLsGGqkqriaiarailkdapiLLLdeatsaLdaeseqlvqqaleelmkgrttlviahrLatvlk.adrivvldkGri 552
                 tLsGGqk r+      l+   +LLLde t+ Ld e+ + + +al++       lvi h ++ + k +++i v+++ ++
  MMETSP1137-20121227|8395_1 523 TLSGGQKSRVVFVELGLRRCHLLLLDEPTNHLDLETVDCLVKALHAFEG--GVLVITHNVSLINKvCNQIWVIEDRKV 598
                 7*******************************************98755..58**********875799*9*998776 PP

  == domain 5    score: -3.5 bits;  conditional E-value: 9.7
   TIGR02204 210 vqayaseeaersrfdaavekayeaarkrikaralliavvivlvfgavvlvlWvGardvla 269
                   a a+ +a++++ +a++ +  + a+++i+aral     +   +++  +v   G+  vl 
  MMETSP1137-20121227|8395_1 694 AAAAAKVKADKEQAEAQLLRESQLAQAAISARALPLHECMAQLLATGRAVDVCGGLYVLC 753
                 223334444444445555555555555555555555555555555555555555555555 PP

>> TIGR03411  urea_trans_UrtD: urea ABC transporter, ATP-binding protein UrtD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.0   8.4e-05    0.0057       9      52 ..      13      57 ..       7      87 .. 0.82
   2 !   24.6   0.0   5.5e-08   3.7e-06     118     211 ..     182     274 ..     165     290 .. 0.83
   3 !   21.0   0.0   6.8e-07   4.6e-05       2      80 ..     396     476 ..     395     486 .. 0.83
   4 !   28.1   0.0   4.7e-09   3.2e-07      96     220 ..     475     598 ..     459     610 .. 0.82

  Alignments for each domain:
  == domain 1    score: 14.2 bits;  conditional E-value: 8.4e-05
   TIGR03411  9 svsfdgfkalndlslsveegelrviiGpnGaGkttllDvi.tGkt 52
                s+s +g +  +d +ls+ +g    +iGpnG Gk+t++ +i tG +
  MMETSP1137-20121227|8395_1 13 SISRGGKTLFHDAKLSLIHGRRYGLIGPNGCGKSTVMHAIgTGEV 57
                556666667788899999999999*************99856665 PP

  == domain 2    score: 24.6 bits;  conditional E-value: 5.5e-08
   TIGR03411 118 keekerieevleli.gLeekadkkaglLshGqkqwLeigmllvqepkllllDePvaGmtdeetektaellkelakersvvvvehDmefvrelaek 211
                 +++++r +++l+ +  Lee++++ +++ s G + ++ ++  l  +p+llllDeP+  +  +        l++   ++++vvv hD +f+ ++ + 
  MMETSP1137-20121227|8395_1 182 DSAEQRASAILSGLqFLEEQKNWPTAAFSGGWRMRISLARALFVKPRLLLLDEPTNHLDLHAVIWLEGYLQKW--KHTLVVVSHDRDFLTTVCTD 274
                 556666677776551589999***********************************99999888888888864..79***********9988665 PP

  == domain 3    score: 21.0 bits;  conditional E-value: 6.8e-07
   TIGR03411   2 iLevedvsvsfdgfkal.ndlslsveegelrviiGpnGaGkttllDvitGktrpdeGsvlfkgk.dltklkeaeiarlGig 80 
                 iL v++vs +++  + l +d+++ ++ ++  +++G+nG Gk+tll ++     p++G+v  + + ++  +++++  +l  g
  MMETSP1137-20121227|8395_1 396 ILAVDNVSFHYENQEDLfTDVDFGLNMDSRVALVGANGTGKSTLLKLMLSELTPTRGEVRQSRScKIGVYNQHSCDQLAAG 476
                 78999999999998765489***************************************9887767777666666665555 PP

  == domain 4    score: 28.1 bits;  conditional E-value: 4.7e-09
   TIGR03411  96 enlelalkadksvlallfarlskeekerieevleligLeekadkka.glLshGqkqwLeigmllvqepkllllDePvaGmtdeetektaellkelakersvvvvehDmefvrelaekvtvlheGkv 220
                   ++la  +  s ++ l++++ + ++++i+++l   gLe +++ +a  +Ls Gqk ++    l +++ +llllDeP+  +  e  +   + l++   e  v+v+ h+++ ++++ +++ v+++ kv
  MMETSP1137-20121227|8395_1 475 AGMRLAKGEVLSPVSYLAHTFPSMSTQEIRNALGKFGLEGHHHLQAiETLSGGQKSRVVFVELGLRRCHLLLLDEPTNHLDLETVDCLVKALHAF--EGGVLVITHNVSLINKVCNQIWVIEDRKV 598
                 4678888888899999*************************99998468********99999999***********9988766555555555544..557******************99988776 PP

>> TIGR00968  3a0106s01: sulfate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.2   0.0    0.0013     0.086      13      51 ..      19      57 ..      10      78 .. 0.81
   2 !   41.5   0.0   3.3e-13   2.2e-11     107     220 ..     184     294 ..     175     304 .. 0.83
   3 !   16.4   0.0   1.6e-05    0.0011       3      57 ..     399     454 ..     397     470 .. 0.85
   4 !   17.4   0.0   7.7e-06   0.00052     129     214 ..     522     603 ..     490     617 .. 0.81

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 0.0013
   TIGR00968 13 fqalddvdlevktGslvallGpsGsGkstllrviaGlek 51
                 + ++d +l++ +G+  +l+Gp G Gkst++ +i   e 
  MMETSP1137-20121227|8395_1 19 KTLFHDAKLSLIHGRRYGLIGPNGCGKSTVMHAIGTGEV 57
                566788999999*******************99976555 PP

  == domain 2    score: 41.5 bits;  conditional E-value: 3.3e-13
   TIGR00968 107 ikakveellelvqleklgdryp.sqlsGGqrqrvalaralavepqvllldepfgaldakvrkelrawlrklhdevkvttvfvthdqeealevadrivvlekGkieqvgsaeevyd 220
                   ++ + +l+ +q+ + ++++p + +sGG r r++laral v+p++llldep   ld +       wl    ++ k t v+v+hd++  + v  +i    + k+       ev++
  MMETSP1137-20121227|8395_1 184 AEQRASAILSGLQFLEEQKNWPtAAFSGGWRMRISLARALFVKPRLLLLDEPTNHLDLHAV----IWLEGYLQKWKHTLVVVSHDRDFLTTVCTDILHCWRSKLVHYAGNYEVFE 294
                 56677788888888888888883579*******************************8765....57777777788899********9999999999888888877777777776 PP

  == domain 3    score: 16.4 bits;  conditional E-value: 1.6e-05
   TIGR00968   3 ianvskrfGdfq.alddvdlevktGslvallGpsGsGkstllrviaGlekpdsGri 57 
                 ++nvs ++ + +  + dvd+ ++  s val+G  G+Gkstll+++     p+ G++
  MMETSP1137-20121227|8395_1 399 VDNVSFHYENQEdLFTDVDFGLNMDSRVALVGANGTGKSTLLKLMLSELTPTRGEV 454
                 78888888776515689**************************9987777888776 PP

  == domain 4    score: 17.4 bits;  conditional E-value: 7.7e-06
   TIGR00968 129 sqlsGGqrqrvalaralavepqvllldepfgaldakvrkelrawlrklhdevkvttvfvthdqeealevadrivvlekGkieqvgs 214
                 + lsGGq+ rv +        ++llldep   ld +  + l + l       +   +++th+ +   +v ++i v+e+ k+++   
  MMETSP1137-20121227|8395_1 522 ETLSGGQKSRVVFVELGLRRCHLLLLDEPTNHLDLETVDCLVKALHA----FEGGVLVITHNVSLINKVCNQIWVIEDRKVNRFAG 603
                 679**********99888899*************9877766555544....445556789******************99987654 PP

>> TIGR03265  PhnT2: putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.9   0.0    0.0003      0.02      18      54 ..      20      56 ..      11      74 .. 0.85
   2 !   38.5   0.0   2.6e-12   1.7e-10     108     218 ..     181     288 ..     175     314 .. 0.81
   3 !   15.6   0.0   2.2e-05    0.0015       3      64 ..     395     457 ..     393     465 .. 0.87
   4 !   18.4   0.5   3.3e-06   0.00023     113     226 ..     501     611 ..     494     726 .. 0.74

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 0.0003
   TIGR03265 18 talkdislsvkkgelvclLGPsGCGkttLLriiaGLe 54
                t ++d +ls+ +g    l+GP GCGk+t++ +i   e
  MMETSP1137-20121227|8395_1 20 TLFHDAKLSLIHGRRYGLIGPNGCGKSTVMHAIGTGE 56
                567899999999******************9997655 PP

  == domain 2    score: 38.5 bits;  conditional E-value: 2.6e-12
   TIGR03265 108 reevaerveelLelvglsgseekyP.gqlsGGqqqrvaLaralalsPglLLLDePlsaLDakvrekLreelkklqrklgvttimvthdqeealslaDrivvmnkgkieqvgt 218
                  + +++r + +L+ +++ + ++ +P + +sGG + r++Laral ++P lLLLDeP   LD +    L   l+k     + t ++v hd++   +++  i    ++k+  ++ 
  MMETSP1137-20121227|8395_1 181 ADSAEQRASAILSGLQFLEEQKNWPtAAFSGGWRMRISLARALFVKPRLLLLDEPTNHLDLHAVIWLEGYLQKW----KHTLVVVSHDRDFLTTVCTDILHCWRSKLVHYAG 288
                 5778999*********9999999*94479*******************************99888887776655....5566789999887766666666555555555555 PP

  == domain 3    score: 15.6 bits;  conditional E-value: 2.2e-05
   TIGR03265   3 eylsieeiekefeaft.alkdislsvkkgelvclLGPsGCGkttLLriiaGLekqdaGaillg 64 
                 + l++++++ ++e+ +  ++d+++ ++ +  v+l+G  G Gk+tLL+++    ++++G++ ++
  MMETSP1137-20121227|8395_1 395 PILAVDNVSFHYENQEdLFTDVDFGLNMDSRVALVGANGTGKSTLLKLMLSELTPTRGEVRQS 457
                 67999****99997651569***************************9988888999998875 PP

  == domain 4    score: 18.4 bits;  conditional E-value: 3.3e-06
   TIGR03265 113 erveelLelvglsgsee.kyPgqlsGGqqqrvaLaralalsPglLLLDePlsaLDakvrekLreelkklqrklgvttimvthdqeealslaDrivvmnkgkieqvgtPeeiYeqP 226
                 + ++++L   gl+g ++ +    lsGGq+ rv +      + +lLLLDeP   LD    + L + l+++   +    +++th+      ++++i v+++ k+++ +   e Y++ 
  MMETSP1137-20121227|8395_1 501 QEIRNALGKFGLEGHHHlQAIETLSGGQKSRVVFVELGLRRCHLLLLDEPTNHLDLETVDCLVKALHAFEGGV----LVITHNVSLINKVCNQIWVIEDRKVNRFAGEFEEYRDM 611
                 66777777788887766234578************99999**********************99999887654....67899999999999999999999999988888888764 PP

>> TIGR02324  CP_lyasePhnL: phosphonate C-P lyase system protein PhnL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.9   0.0    0.0015       0.1      24      54 ..      22      52 ..      13      59 .. 0.90
   2 !   38.7   0.0   2.3e-12   1.5e-10     122     219 ..     181     275 ..     171     279 .. 0.82
   3 !   27.0   0.0     9e-09   6.1e-07      21     215 ..     410     586 ..     400     594 .. 0.71

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 0.0015
   TIGR02324 24 lkevsleveaGelvalsGksGaGkstllksl 54
                +++ +l++  G    l+G+ G Gkst+++++
  MMETSP1137-20121227|8395_1 22 FHDAKLSLIHGRRYGLIGPNGCGKSTVMHAI 52
                6788999*********************987 PP

  == domain 2    score: 38.7 bits;  conditional E-value: 2.3e-12
   TIGR02324 122 reearakakellarlniperLWslaPatfsGGekqRvniaraliadrPi.LLLdePtasLdaanrkvvvelikeakargaaligifhdeevrelvadre 219
                  ++a+++a+++l+ l+  e   + + a fsGG + R+ +aral + +P+ LLLdePt  Ld     +v+ l   +++   +l+ + hd++  ++v++  
  MMETSP1137-20121227|8395_1 181 ADSAEQRASAILSGLQFLEEQKNWPTAAFSGGWRMRISLARALFV-KPRlLLLDEPTNHLDLH---AVIWLEGYLQKWKHTLVVVSHDRDFLTTVCTDI 275
                 57899************9999999999******************.66516789******754...566666666677778999999998877777665 PP

  == domain 3    score: 27.0 bits;  conditional E-value: 9e-09
   TIGR02324  21 lpvlkevsleveaGelvalsGksGaGkstllkslyanYlpesgrilvrhegeivdlvkaserevlevRrktigyvsqfLrviPRvsalevvaepllelGvereearakakellarlniperLWslaPatfsGGekqRvniaraliadrPiLLLdePtasLdaanrkvvvelikeakargaaligifhdeevrelv 215
                  + +++v++ ++    val G+ G+Gkstllk + ++  p  g+++   + +i    + s  ++                +  R++  ev+        +    ++++ +++l ++ +  +    a  t sGG k Rv      +    +LLLdePt  Ld  + +    l+k ++a    ++ i h+ ++ ++v
  MMETSP1137-20121227|8395_1 410 EDLFTDVDFGLNMDSRVALVGANGTGKSTLLKLMLSELTPTRGEVRQSRSCKIGVYNQHSCDQLA---------------AGMRLAKGEVLSPVSYLAHTFPSMSTQEIRNALGKFGLEGHHHLQAIETLSGGQKSRVVFVELGLRRCHLLLLDEPTNHLDLETVD---CLVKALHAFEGGVLVITHNVSLINKV 586
                 467899**************************************998887776633333333332...............233555555555444444444555666677777777776666666678*********998887777799***********877665...55555566555666677765555544 PP

>> TIGR01288  nodI: nodulation ABC transporter NodI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.0   3.8e-06   0.00026      11      49 ..      13      51 ..       6      64 .. 0.90
   2 !   31.8   0.0   2.3e-10   1.5e-08     120     175 ..     195     246 ..     170     276 .. 0.82
   3 !   36.0   0.2   1.2e-11   8.3e-10      19     210 ..     412     595 ..     394     604 .. 0.76

  Alignments for each domain:
  == domain 1    score: 17.9 bits;  conditional E-value: 3.8e-06
   TIGR01288 11 sksygdkvvvndlsftiaagecfgllgpngagkstiarl 49
                s s g+k + +d  +++ +g  +gl+gpng+gkst+   
  MMETSP1137-20121227|8395_1 13 SISRGGKTLFHDAKLSLIHGRRYGLIGPNGCGKSTVMHA 51
                56889******************************9865 PP

  == domain 2    score: 31.8 bits;  conditional E-value: 2.3e-10
   TIGR01288 120 lefarleskadvrvadlsggmkrrltlaralindpqllildepttgldpharhliw 175
                 l    le + + + a +sgg + r++laral   p+ll+ldept  ld ha  +iw
  MMETSP1137-20121227|8395_1 195 L--QFLEEQKNWPTAAFSGGWRMRISLARALFVKPRLLLLDEPTNHLDLHA--VIW 246
                 3..4489999****************************************9..456 PP

  == domain 3    score: 36.0 bits;  conditional E-value: 1.2e-11
   TIGR01288  19 vvndlsftiaagecfgllgpngagkstiarlvlglispdegkitvlgepvpararlarakigvvpqf..dnldreft.vrenllvfgryf.....glstreieevipsllefarleskadv.rvadlsggmkrrltlaralindpqllildepttgldpharhliwerlrsllargktilltthlmeeaerlcdrlcvlea 210
                 +  d+ f +       l+g ng+gkst+ +l+l   +p +g++         ++r   +kigv +q   d+l   +  ++ ++l    y+     ++st+ei +++    +f  le + +   + +lsgg k r+ +    +   +ll+ldept  ld  +   +   +++l a    +l+ th +   +++c+++ v+e 
  MMETSP1137-20121227|8395_1 412 LFTDVDFGLNMDSRVALVGANGTGKSTLLKLMLSELTPTRGEVR--------QSR--SCKIGVYNQHscDQLAAGMRlAKGEVLSPVSYLahtfpSMSTQEIRNAL---GKF-GLEGHHHLqAIETLSGGQKSRVVFVELGLRRCHLLLLDEPTNHLDLETVDCL---VKALHAFEGGVLVITHNVSLINKVCNQIWVIED 595
                 567899999999999*************************9863........233..2578888875336776665414455665555541111256666666554...455.4777666515889********************************9987766...5778888899*********************96 PP

>> TIGR01978  sufC: FeS assembly ATPase SufC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.0   8.3e-05    0.0056      11      54 ..      17      60 ..       8      84 .. 0.83
   2 !   27.9   0.0   4.4e-09     3e-07     143     235 ..     207     296 ..     184     304 .. 0.89
   3 !   15.7   0.0   2.4e-05    0.0016       2      49 ..     398     446 ..     397     476 .. 0.81
   4 !   21.3   0.0   4.9e-07   3.3e-05     143     223 ..     522     598 ..     500     616 .. 0.85

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 8.3e-05
   TIGR01978 11 edkeiLkglnlevkkGevhaimGpnGsGkstLskvlaghekyev 54
                  k++ ++ +l++ +G  + ++GpnG Gkst+++++   e  e+
  MMETSP1137-20121227|8395_1 17 GGKTLFHDAKLSLIHGRRYGLIGPNGCGKSTVMHAIGTGEVEEI 60
                568888999999**********************9976655555 PP

  == domain 2    score: 27.9 bits;  conditional E-value: 4.4e-09
   TIGR01978 143 eGfsGGekkrneilqlallePklaiLDeiDsGlDvDalkivaegvnklreeekalliithyerllelikPdvvhvlldGrivksGdvelakel 235
                   fsGG + r  + + ++++P+l +LDe    lD+ a+  +   ++k++   ++l++++h + +l ++  d +h   +  +   G+ e+ +++
  MMETSP1137-20121227|8395_1 207 AAFSGGWRMRISLARALFVKPRLLLLDEPTNHLDLHAVIWLEGYLQKWK---HTLVVVSHDRDFLTTVCTDILHCWRSKLVHYAGNYEVFEKV 296
                 57************************************99999999997...579*******************9988888888988888776 PP

  == domain 3    score: 15.7 bits;  conditional E-value: 2.4e-05
   TIGR01978   2 kikdlhvsvedk.eiLkglnlevkkGevhaimGpnGsGkstLskvlagh 49 
                  + +++ + e++ ++ ++++  ++    +a++G+nG+GkstL k +  +
  MMETSP1137-20121227|8395_1 398 AVDNVSFHYENQeDLFTDVDFGLNMDSRVALVGANGTGKSTLLKLMLSE 446
                 567777777765157899*************************988654 PP

  == domain 4    score: 21.3 bits;  conditional E-value: 4.9e-07
   TIGR01978 143 eGfsGGekkrneilqlallePklaiLDeiDsGlDvDalkivaegvnklreeekalliithyerllelikPdvvhvlldGri 223
                 e  sGG k r   + l l + +l +LDe    lD++++ ++++ ++ +   e ++l+ith+  l++++  +++ v+ d ++
  MMETSP1137-20121227|8395_1 522 ETLSGGQKSRVVFVELGLRRCHLLLLDEPTNHLDLETVDCLVKALHAF---EGGVLVITHNVSLINKVC-NQIWVIEDRKV 598
                 568*******************************99988887766655...789************985.67788877776 PP

>> TIGR01277  thiQ: thiamine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.8   0.0    0.0072      0.48      12      44 ..      20      52 ..      13      64 .. 0.84
   2 !   20.9   0.0   7.2e-07   4.8e-05     128     200 ..     208     276 ..     187     286 .. 0.85
   3 !   23.1   0.0   1.5e-07     1e-05       2      56 ..     398     455 ..     397     466 .. 0.83
   4 !   27.0   0.0   9.3e-09   6.3e-07     125     209 ..     520     600 ..     494     603 .. 0.79

  Alignments for each domain:
  == domain 1    score: 7.8 bits;  conditional E-value: 0.0072
   TIGR01277 12 hlplefdlsveaGervailGesGaGkstllnli 44
                +l+   +ls+ +G r  ++G+ G Gkst++  i
  MMETSP1137-20121227|8395_1 20 TLFHDAKLSLIHGRRYGLIGPNGCGKSTVMHAI 52
                56666789999*****************99877 PP

  == domain 2    score: 20.9 bits;  conditional E-value: 7.2e-07
   TIGR01277 128 elsGGqrqrvalarclvrekpillldepfsaldpklreemlalvkkladekkltlllvthslsdaaaiasqvv 200
                  +sGG r r++lar l  +  +llldep   ld +     +  ++   ++ k tl++v+h+ + ++++ + ++
  MMETSP1137-20121227|8395_1 208 AFSGGWRMRISLARALFVKPRLLLLDEPTNHLDLH----AVIWLEGYLQKWKHTLVVVSHDRDFLTTVCTDIL 276
                 58**************99999*********99964....4556678889999********9988887777665 PP

  == domain 3    score: 23.1 bits;  conditional E-value: 1.5e-07
   TIGR01277   2 klddviyeykh...lplefdlsveaGervailGesGaGkstllnliaGflepasGeik 56 
                 ++d+v ++y++   l+   d+ ++   rva++G  G+Gkstll+l+   l+p++Ge++
  MMETSP1137-20121227|8395_1 398 AVDNVSFHYENqedLFTDVDFGLNMDSRVALVGANGTGKSTLLKLMLSELTPTRGEVR 455
                 67888887765111455678889999*****************************986 PP

  == domain 4    score: 27.0 bits;  conditional E-value: 9.3e-09
   TIGR01277 125 lpeelsGGqrqrvalarclvrekpillldepfsaldpklreemlalvkkladekkltlllvthslsdaaaiasqvvvvedGkikv 209
                   e lsGGq+ rv +    +r   +llldep   ld      + +lvk l +  +  +l++th++s + ++ +q+ v+ed k++ 
  MMETSP1137-20121227|8395_1 520 AIETLSGGQKSRVVFVELGLRRCHLLLLDEPTNHLDLE---TVDCLVKAL-HAFEGGVLVITHNVSLINKVCNQIWVIEDRKVNR 600
                 4589*****************************99964...344566655.56678999*********************99975 PP

>> TIGR03522  GldA_ABC_ATP: gliding motility-associated ABC transporter ATP-binding subunit GldA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   0.0   0.00017     0.012      26      49 ..      30      53 ..      14      80 .. 0.80
   2 !   25.1   0.0   3.5e-08   2.4e-06     124     212 ..     198     285 ..     174     332 .. 0.74
   3 !   39.4   0.0   1.5e-12     1e-10       4     210 ..     398     598 ..     394     629 .. 0.81

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 0.00017
   TIGR03522 26 ekGeivGflGPnGaGkstlmkilt 49
                 +G+  G++GPnG Gkst+m  + 
  MMETSP1137-20121227|8395_1 30 IHGRRYGLIGPNGCGKSTVMHAIG 53
                579999**************9774 PP

  == domain 2    score: 25.1 bits;  conditional E-value: 3.5e-08
   TIGR03522 124 kaeqhk.kigalskGyrqrvGlakallhdPkvlildePttGldPnqlveirevikeiakdktvilsthimqevealcdrviiinkGkiva 212
                  +eq     +a+s G+r r+ la+al  +P++l+ldePt  ld   ++ +   +++   + t+++ +h    + ++c +++   + k+v 
  MMETSP1137-20121227|8395_1 198 LEEQKNwPTAAFSGGWRMRISLARALFVKPRLLLLDEPTNHLDLHAVIWLEGYLQKW--KHTLVVVSHDRDFLTTVCTDILHCWRSKLVH 285
                 334433146789*******************************99999888877764..4577778888888888888888777777765 PP

  == domain 3    score: 39.4 bits;  conditional E-value: 1.5e-12
   TIGR03522   4 evsdlsklygkqkal.devsfeaekGeivGflGPnGaGkstlmkiltgylkadsGsvavagedvlknslevrkniGylPehnPlyldlyvreylefsaalyklkgrklkkrveelielvGlkaeqh.kkigalskGyrqrvGlakallhdPkvlildePttGldPnqlveirevikei.akdktvilsthimqevealcdrviiinkGki 210
                  v ++s +y +q+ l  +v f  +  + v ++G nG+Gkstl+k++ + l+++ G v   ++   k  +  +++   l     l +     e l   + l      +  +++++ + + Gl+  +h + i+ ls G + rv + +  l   ++l+ldePt  ld +    +  ++k + a +  v++ th +  ++ +c+++ +i+  k+
  MMETSP1137-20121227|8395_1 398 AVDNVSFHYENQEDLfTDVDFGLNMDSRVALVGANGTGKSTLLKLMLSELTPTRGEVR--QSRSCKIGVYNQHSCDQLAAGMRLAKG----EVLSPVSYLAHTFPSMSTQEIRNALGKFGLEGHHHlQAIETLSGGQKSRVVFVELGLRRCHLLLLDEPTNHLDLET---VDCLVKALhAFEGGVLVITHNVSLINKVCNQIWVIEDRKV 598
                 688999999988754389*************************************865..455566666667777777666555544....4454444444444455699************99984679**********************************765...45566666356889********************998776 PP

>> TIGR01846  type_I_sec_HlyB: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.2   0.0    0.0021      0.14     471     503 ..      20      52 ..      10      81 .. 0.84
   2 !   28.8   0.0   1.2e-09   7.9e-08     592     669 ..     207     283 ..     187     312 .. 0.76
   3 !   17.1   0.0   4.2e-06   0.00028     457     514 ..     398     454 ..     384     458 .. 0.90
   4 !   23.2   0.0   6.1e-08   4.1e-06     593     676 ..     523     606 ..     516     620 .. 0.87

  Alignments for each domain:
  == domain 1    score: 8.2 bits;  conditional E-value: 0.0021
   TIGR01846 471 evlsnlsldikaGeviGivGpsGsGkstltkll 503
                 +++++ +l++ +G+  G++Gp G+Gkst+ + +
  MMETSP1137-20121227|8395_1  20 TLFHDAKLSLIHGRRYGLIGPNGCGKSTVMHAI 52 
                 567888999*******************98765 PP

  == domain 2    score: 28.8 bits;  conditional E-value: 1.2e-09
   TIGR01846 592 aalsGGqrqrialaralvanPrilildeatsaldyeseavimrnlreickgrtviiiahrlstv.raadrilvlekGki 669
                 aa+sGG r ri+laral ++Pr+l+lde t  ld ++   +   l++     t+++++h  + +   +  il   + k+
  MMETSP1137-20121227|8395_1 207 AAFSGGWRMRISLARALFVKPRLLLLDEPTNHLDLHAVIWLEGYLQKW--KHTLVVVSHDRDFLtTVCTDILHCWRSKL 283
                 789*******************************99888777777775..45777777754443134666666555555 PP

  == domain 3    score: 17.1 bits;  conditional E-value: 4.2e-06
   TIGR01846 457 efenirfrykedspevlsnlsldikaGeviGivGpsGsGkstltkllqrlyvPekGrv 514
                  ++n+ f y++ + ++++++ + ++    + +vG  G+Gkstl kl+    +P +G+v
  MMETSP1137-20121227|8395_1 398 AVDNVSFHYEN-QEDLFTDVDFGLNMDSRVALVGANGTGKSTLLKLMLSELTPTRGEV 454
                 5789*****75.67899**************************************998 PP

  == domain 4    score: 23.2 bits;  conditional E-value: 6.1e-08
   TIGR01846 593 alsGGqrqrialaralvanPrilildeatsaldyeseavimrnlreickgrtviiiahrlstv.raadrilvlekGkive.sGkhe 676
                 +lsGGq+ r+      +   ++l+lde t  ld e+ + + + l++   g  v++i+h +s + + +++i v+e+ k+    G++e
  MMETSP1137-20121227|8395_1 523 TLSGGQKSRVVFVELGLRRCHLLLLDEPTNHLDLETVDCLVKALHAFEGG--VLVITHNVSLInKVCNQIWVIEDRKVNRfAGEFE 606
                 69*******************************************98765..8999*****99456*********99864245555 PP

>> TIGR03269  met_CoM_red_A2: methyl coenzyme M reductase system, component A2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   0.0     0.024       1.6      12      46 ..      18      52 ..       7      64 .. 0.62
   2 !   34.4   0.0   2.8e-11   1.9e-09     425     520 ..     206     297 ..     176     307 .. 0.81
   3 !   11.0   0.0   0.00036     0.024     276     342 ..     393     455 ..     370     462 .. 0.77
   4 !   24.8   0.0   2.3e-08   1.6e-06     165     263 ..     520     615 ..     503     631 .. 0.71

  Alignments for each domain:
  == domain 1    score: 4.9 bits;  conditional E-value: 0.024
   TIGR03269 12 glevlknisleleeGevlGilGksGaGksvllhll 46
                g++ +++ +l l  G+  G++G  G+Gks ++h +
  MMETSP1137-20121227|8395_1 18 GKTLFHDAKLSLIHGRRYGLIGPNGCGKSTVMHAI 52
                44445556666666666666666666666666654 PP

  == domain 2    score: 34.4 bits;  conditional E-value: 2.8e-11
   TIGR03269 425 pdelseGerhrvalaqvlikeprivildeptGtmdpitkvkvaesilkareeleetfvivshdmdfvlevcdraalmrdGkivkiGdpeeiveelt 520
                 +  +s G r r++la+ l  +pr+++ldept  +d  +   ++  + k     ++t v+vshd df+++vc  +      k+v+     e+ e++ 
  MMETSP1137-20121227|8395_1 206 TAAFSGGWRMRISLARALFVKPRLLLLDEPTNHLDLHAVIWLEGYLQK----WKHTLVVVSHDRDFLTTVCTDILHCWRSKLVHYAGNYEVFEKVF 297
                 56789******************************8776666655544....6789***************9998888899999888888877765 PP

  == domain 3    score: 11.0 bits;  conditional E-value: 0.00036
   TIGR03269 276 gediikvkdvskryisvdrGvvkavdnvslevkekeifGlvGtsGaGkttlskilaGvleptsGeve 342
                   +i+ v +vs +y   +  +     +v++ ++      lvG  G+Gk+tl k+++  l pt+Gev 
  MMETSP1137-20121227|8395_1 393 AMPILAVDNVSFHYENQED-LF---TDVDFGLNMDSRVALVGANGTGKSTLLKLMLSELTPTRGEVR 455
                 5567777777777766553.33...356677777777889999999999999999999999999985 PP

  == domain 4    score: 24.8 bits;  conditional E-value: 2.3e-08
   TIGR03269 165 iardlsGGekqrvvlarqlakeplllladeptGtldpktaklvhealkeavkeedislvltshwpeviedlsdkaillekGeive.eGepeevvakfles 263
                     lsGG+k rvv++    ++  lll dept  ld +t + + +al++     +  +++ +h   +i++++++  ++e+ ++ +  Ge ee  +   e+
  MMETSP1137-20121227|8395_1 520 AIETLSGGQKSRVVFVELGLRRCHLLLLDEPTNHLDLETVDCLVKALHAF----EGGVLVITHNVSLINKVCNQIWVIEDRKVNRfAGEFEEYRDMLAEQ 615
                 44578999999999988888888888889999999999988777776543....3344445588888888888888888888866246666655555555 PP

>> TIGR02142  modC_ABC: molybdate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   0.0     0.047       3.1      15      44 ..      24      53 ..       8      62 .. 0.76
   2 !   33.0   0.0   1.2e-10     8e-09     128     195 ..     205     268 ..     181     306 .. 0.80
   3 !   12.7   0.0   0.00017     0.012      11      54 ..     411     454 ..     402     462 .. 0.86
   4 !   25.4   0.1   2.5e-08   1.7e-06     128     218 ..     520     607 ..     505     722 .. 0.84

  Alignments for each domain:
  == domain 1    score: 4.7 bits;  conditional E-value: 0.047
   TIGR02142 15 dvdlelpgkgvtalFGrsGsGktslirlia 44
                d++l+l    + +l G  G+Gk++++++i 
  MMETSP1137-20121227|8395_1 24 DAKLSLIHGRRYGLIGPNGCGKSTVMHAIG 53
                4555554447889**************984 PP

  == domain 2    score: 33.0 bits;  conditional E-value: 1.2e-10
   TIGR02142 128 lpgkLsGGekqRvaigRAlLssPeLLlmDePLaaLDekrkkeilPyLerlsaelkiPilyvsHsldev 195
                  ++  sGG + R++++RAl  +P+LLl+DeP   LD +    +  yL++     k  ++ vsH+ d +
  MMETSP1137-20121227|8395_1 205 PTAAFSGGWRMRISLARALFVKPRLLLLDEPTNHLDLHAVIWLEGYLQKW----KHTLVVVSHDRDFL 268
                 57889*******************************98766555666555....55567788887655 PP

  == domain 3    score: 12.7 bits;  conditional E-value: 0.00017
   TIGR02142  11 dfeLdvdlelpgkgvtalFGrsGsGktslirliaGLtrpdegei 54 
                 d   dvd+ l+ + ++al G+ G+Gk++l++l+   ++p++ge+
  MMETSP1137-20121227|8395_1 411 DLFTDVDFGLNMDSRVALVGANGTGKSTLLKLMLSELTPTRGEV 454
                 5667999999999*******************998888998887 PP

  == domain 4    score: 25.4 bits;  conditional E-value: 2.5e-08
   TIGR02142 128 lpgkLsGGekqRvaigRAlLssPeLLlmDePLaaLDekrkkeilPyLerlsaelkiPilyvsHsldevarladrvvvledGrvkaa.gklee 218
                   ++LsGG k Rv      L + +LLl+DeP   LD +  + ++       + ++  +l + H+++ ++++ +++ v+ed +v+ + g+ ee
  MMETSP1137-20121227|8395_1 520 AIETLSGGQKSRVVFVELGLRRCHLLLLDEPTNHLDLETVDCLVKA----LHAFEGGVLVITHNVSLINKVCNQIWVIEDRKVNRFaGEFEE 607
                 5689********************************9877665544....44678899*************************864145444 PP

>> TIGR03005  ectoine_ehuA: ectoine/hydroxyectoine ABC transporter, ATP-binding protein EhuA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.2   0.0     0.002      0.13      15      49 ..      21      55 ..      14      79 .. 0.87
   2 !   36.8   0.0   7.8e-12   5.2e-10     121     237 ..     182     295 ..     175     311 .. 0.84
   3 !    9.3   0.0    0.0019      0.13       4      48 ..     400     445 ..     397     465 .. 0.79
   4 !   17.6   0.0   5.5e-06   0.00037     146     221 ..     523     594 ..     500     607 .. 0.81

  Alignments for each domain:
  == domain 1    score: 9.2 bits;  conditional E-value: 0.002
   TIGR03005 15 vldglelevaaGekvaliGpsGsGkstilrilmtl 49
                ++++++l++ +G++  liGp G Gkst++  + t 
  MMETSP1137-20121227|8395_1 21 LFHDAKLSLIHGRRYGLIGPNGCGKSTVMHAIGTG 55
                5677889999******************9988774 PP

  == domain 2    score: 36.8 bits;  conditional E-value: 7.8e-12
   TIGR03005 121 aeaekravelldmvGladkadalp.aqlsGGqkqrvaiaralalrpkvllfdevtsaldpelveevlnvlrrlasetdltmllvthemgfarefadrvlffdkGkiveeGkpdeifrk 237
                   ae+ra  +l  + + + ++++p a +sGG + r+++aral ++p++ll+de+t  ld + v  +        ++ + t+++v+h+  f   ++  +l   + k+v      e+f+k
  MMETSP1137-20121227|8395_1 182 DSAEQRASAILSGLQFLEEQKNWPtAAFSGGWRMRISLARALFVKPRLLLLDEPTNHLDLHAVIWLE----GYLQKWKHTLVVVSHDRDFLTTVCTDILHCWRSKLVHYAGNYEVFEK 295
                 5799*******99999999999994579*******************************87665444....444567789*************************9998888888876 PP

  == domain 3    score: 9.3 bits;  conditional E-value: 0.0019
   TIGR03005   4 sdvtkrfgelt.vldglelevaaGekvaliGpsGsGkstilrilmt 48 
                 ++v+ ++++   ++ ++++ ++   +val+G  G+Gkst+l+++++
  MMETSP1137-20121227|8395_1 400 DNVSFHYENQEdLFTDVDFGLNMDSRVALVGANGTGKSTLLKLMLS 445
                 5666677766415578889999999*****************8875 PP

  == domain 4    score: 17.6 bits;  conditional E-value: 5.5e-06
   TIGR03005 146 qlsGGqkqrvaiaralalrpkvllfdevtsaldpelveevlnvlrrlasetdltmllvthemgfarefadrvlffd 221
                  lsGGqk rv        r ++ll+de+t  ld e v+ +++ l+      +  +l++th++ + +++++++   +
  MMETSP1137-20121227|8395_1 523 TLSGGQKSRVVFVELGLRRCHLLLLDEPTNHLDLETVDCLVKALH----AFEGGVLVITHNVSLINKVCNQIWVIE 594
                 69********99876667899************999887666554....456678999**9999999988876665 PP

>> TIGR02770  nickel_nikD: nickel import ATP-binding protein NikD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.2   0.0    0.0023      0.16       2      32 ..      22      52 ..      21      96 .. 0.84
   2 !   22.9   0.0   1.4e-07   9.7e-06     125     215 ..     208     294 ..     180     306 .. 0.85
   3 !   38.8   0.1   2.1e-12   1.4e-10       2     204 ..     413     598 ..     412     608 .. 0.75

  Alignments for each domain:
  == domain 1    score: 9.2 bits;  conditional E-value: 0.0023
   TIGR02770  2 vqdvnlslkrgkvlalvGesGsGksltalai 32
                 +d +lsl +g+  +l+G  G+Gks++  ai
  MMETSP1137-20121227|8395_1 22 FHDAKLSLIHGRRYGLIGPNGCGKSTVMHAI 52
                588999*******************999887 PP

  == domain 2    score: 22.9 bits;  conditional E-value: 1.4e-07
   TIGR02770 125 elsGGmlqRvmialallleaplliaDePttdlDvvvqaevLklleelrekrglgillithDlgvvaeladevavmekGkivergtvkelfq 215
                  +sGG   R+ +a al +++ ll+ DePt  lD+ + +     le   +k   ++++++hD   ++ +  +++   + k+v  +   e+f+
  MMETSP1137-20121227|8395_1 208 AFSGGWRMRISLARALFVKPRLLLLDEPTNHLDLHAVI----WLEGYLQKWKHTLVVVSHDRDFLTTVCTDILHCWRSKLVHYAGNYEVFE 294
                 58*******************************98765....4666677778899********9999999998888888887777666665 PP

  == domain 3    score: 38.8 bits;  conditional E-value: 2.1e-12
   TIGR02770   2 vqdvnlslkrgkvlalvGesGsGksltalailglldkeltktsGeilldgkelaalalrgreialilqnPrsafnPllti.keqlletlkalekls.kqakelivealeavgLeeaeevlkkypfelsGGmlqRvmialallleaplliaDePttdlDvvvqaevLklleelrekrglgillithDlgvvaeladevavmekGki 204
                  +dv++ l+++  +alvG+ G+Gks+    +l+l+ +elt t+Ge++ +         r+ +i++  q   + +   + + k ++l  +  l ++  + +++ i +al + gLe   + l+     lsGG   Rv+     l +  ll+ DePt  lD+ +   ++k      + ++ g+l+ith+++ + ++ +++ v+e+ k+
  MMETSP1137-20121227|8395_1 413 FTDVDFGLNMDSRVALVGANGTGKST----LLKLMLSELTPTRGEVRQS---------RSCKIGVYNQHSCDQLAAGMRLaKGEVLSPVSYLAHTFpSMSTQEIRNALGKFGLEGH-HHLQAI-ETLSGGQKSRVVFVELGLRRCHLLLLDEPTNHLDLETVDCLVKA----LHAFEGGVLVITHNVSLINKVCNQIWVIEDRKV 598
                 579*********************97....6777777888999998743.........44444444444444444333220333444444333333367777899********955.555554.58*********99988999***************9765555555....567889**********************99776 PP

>> TIGR01193  bacteriocin_ABC: ABC-type bacteriocin transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.0      0.35        23     486     517 ..      18      49 ..       5      54 .. 0.87
   2 !   19.2   0.0   1.1e-06   7.6e-05     610     667 ..     207     263 ..     197     294 .. 0.80
   3 !   29.0   0.0   1.2e-09   8.2e-08     474     532 ..     397     455 ..     382     477 .. 0.91
   4 !   22.2   0.0   1.5e-07   9.8e-06     587     687 ..     500     599 ..     487     615 .. 0.84

  Alignments for each domain:
  == domain 1    score: 1.1 bits;  conditional E-value: 0.35
   TIGR01193 486 gsevledislkikknekitlvGlsGsGkstla 517
                 g+ +++d +l++ + ++  l+G  G Gkst++
  MMETSP1137-20121227|8395_1  18 GKTLFHDAKLSLIHGRRYGLIGPNGCGKSTVM 49 
                 567889************************86 PP

  == domain 2    score: 19.2 bits;  conditional E-value: 1.1e-06
   TIGR01193 610 ssisgGqkqrlalarallsdskvlildestsnldlltekkivenllklkdktiifvah 667
                 ++ sgG + r++laral+++ ++l+lde t +ldl      +e  l+  + t++ v+h
  MMETSP1137-20121227|8395_1 207 AAFSGGWRMRISLARALFVKPRLLLLDEPTNHLDLHAV-IWLEGYLQKWKHTLVVVSH 263
                 578*******************************8554.3456666666777888877 PP

  == domain 3    score: 29.0 bits;  conditional E-value: 1.2e-09
   TIGR01193 474 ievndvsysyGygsevledislkikknekitlvGlsGsGkstlakllvkffqaesGeil 532
                 + v++vs++y   ++++ d+++ ++++++++lvG  G+Gkstl kl++    ++ Ge+ 
  MMETSP1137-20121227|8395_1 397 LAVDNVSFHYENQEDLFTDVDFGLNMDSRVALVGANGTGKSTLLKLMLSELTPTRGEVR 455
                 6799*********************************************9999999986 PP

  == domain 4    score: 22.2 bits;  conditional E-value: 1.5e-07
   TIGR01193 587 iaeikddieklplGyqtelseeassisgGqkqrlalarallsdskvlildestsnldlltekkivenllklkdktiifvahrlsv.akksdkiivldeGkii 687
                   ei++ + k+ l  + +l     ++sgGqk r+ +    l  +++l+lde t +ldl t   +v+ l  + +  ++ ++h +s+  k  ++i v+++ k+ 
  MMETSP1137-20121227|8395_1 500 TQEIRNALGKFGLEGHHHLQ-AIETLSGGQKSRVVFVELGLRRCHLLLLDEPTNHLDLETVDCLVKALHAF-EGGVLVITHNVSLiNKVCNQIWVIEDRKVN 599
                 56888888888877777776.6789******************************************9999.888999****99615557889999988874 PP

>> TIGR02314  ABC_MetN: D-methionine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.4   0.0    0.0063      0.43      21      56 ..      22      57 ..      11      94 .. 0.78
   2 !   29.2   0.0   1.4e-09   9.4e-08     108     230 ..     175     294 ..     170     312 .. 0.83
   3 !   29.5   0.1   1.2e-09   7.9e-08      23     217 ..     415     596 ..     396     602 .. 0.75

  Alignments for each domain:
  == domain 1    score: 7.4 bits;  conditional E-value: 0.0063
   TIGR02314 21 ldnvslfvpkgqifgvigasgagkstlircvnllek 56
                +++ +l + +g+ +g+ig  g gkst++  +   e 
  MMETSP1137-20121227|8395_1 22 FHDAKLSLIHGRRYGLIGPNGCGKSTVMHAIGTGEV 57
                5677888999*****************998876665 PP

  == domain 2    score: 29.2 bits;  conditional E-value: 1.4e-09
   TIGR02314 108 elentpkekikrkvtellalvglsdkkdsyp.snlsggqkqrvaiaralasepkvllcdeatsaldpattqsilellkeinrrlgltillithemdvvkricdevavidkgeliekgtvseifs 230
                 el++   +  +++ + +l+ + + + ++ +p + +sgg + r+++aral  +p++ll de t  ld  +       l    ++ + t+++++h+ d +  +c  +    + +l+      e+f 
  MMETSP1137-20121227|8395_1 175 ELADIGADSAEQRASAILSGLQFLEEQKNWPtAAFSGGWRMRISLARALFVKPRLLLLDEPTNHLDLHAVIW----LEGYLQKWKHTLVVVSHDRDFLTTVCTDILHCWRSKLVHYAGNYEVFE 294
                 77888889999999999997776666666763689*******************************876544....45555667789999*************999999999998887777775 PP

  == domain 3    score: 29.5 bits;  conditional E-value: 1.2e-09
   TIGR02314  23 nvslfvpkgqifgvigasgagkstlircvnllekptsgavivdgkdlttlsnaelvkarrqigmifqhfnllssrtvfgnvalplelentpkekikrkvtellalvglsdkkds.ypsnlsggqkqrvaiaralasepkvllcdeatsaldpattqsilellkeinrrlgltillithemdvvkricdevavidkg 217
                 +v++ +     + ++ga g+gkstl++ +    +pt g+v         + n + ++ +   gm + + ++ls  +          l+ t      + + + l   gl  +++      lsggqk rv          ++ll de t  ld  t   +++ l+      +  +l+ith++ ++ ++c+++ vi++ 
  MMETSP1137-20121227|8395_1 415 DVDFGLNMDSRVALVGANGTGKSTLLKLMLSELTPTRGEVRQSRSCKIGVYNQHSCD-QLAAGMRLAKGEVLSPVSY---------LAHTFPSMSTQEIRNALGKFGLEGHHHLqAIETLSGGQKSRVVFVELGLRRCHLLLLDEPTNHLDLETVDCLVKALHAF----EGGVLVITHNVSLINKVCNQIWVIEDR 596
                 555556666667889999999999999887777999999876655555555555554.4556776666666654432.........334444444455667788889987776514578***********999999******************99988888765....5579********************875 PP

>> TIGR02203  MsbA_lipidA: lipid A export permease/ATP-binding protein MsbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.0     0.085       5.7     350     379 ..      23      52 ..      12      56 .. 0.84
   2 !   16.9   0.0   5.5e-06   0.00037     469     504 ..     207     242 ..     194     271 .. 0.84
   3 !   21.8   0.0   1.8e-07   1.2e-05     332     390 ..     397     454 ..     384     457 .. 0.89
   4 !   22.8   0.0   9.2e-08   6.2e-06     470     546 ..     523     598 ..     513     610 .. 0.91

  Alignments for each domain:
  == domain 1    score: 3.1 bits;  conditional E-value: 0.085
   TIGR02203 350 dsislkveaGevvalvGrsGsGkstlvnll 379
                 ++ +l++  G++  l+G+ G Gkst+++ +
  MMETSP1137-20121227|8395_1  23 HDAKLSLIHGRRYGLIGPNGCGKSTVMHAI 52 
                 667888899****************98765 PP

  == domain 2    score: 16.9 bits;  conditional E-value: 5.5e-06
   TIGR02203 469 skLsGGqRqRlaiaRallkdaPiLiLDeatsaLDne 504
                 +  sGG R R+++aRal+    +L+LDe t  LD  
  MMETSP1137-20121227|8395_1 207 AAFSGGWRMRISLARALFVKPRLLLLDEPTNHLDLH 242
                 678******************************976 PP

  == domain 3    score: 21.8 bits;  conditional E-value: 1.8e-07
   TIGR02203 332 vefrnvtfrypgddrealdsislkveaGevvalvGrsGsGkstlvnllpRFyepdsGei 390
                 + + nv+f+y++++ + + ++++ ++   +valvG  G Gkstl++l+   + p++Ge+
  MMETSP1137-20121227|8395_1 397 LAVDNVSFHYENQE-DLFTDVDFGLNMDSRVALVGANGTGKSTLLKLMLSELTPTRGEV 454
                 5789******8765.7899****************************988888888875 PP

  == domain 4    score: 22.8 bits;  conditional E-value: 9.2e-08
   TIGR02203 470 kLsGGqRqRlaiaRallkdaPiLiLDeatsaLDneseRlvqaaLerlmkgRttlviahRLstiek.aDrivvlddGki 546
                  LsGGq+ R+      l+   +L+LDe t  LD e    + +aL+++      lvi h +s i+k  ++i v++d k+
  MMETSP1137-20121227|8395_1 523 TLSGGQKSRVVFVELGLRRCHLLLLDEPTNHLDLETVDCLVKALHAFEG--GVLVITHNVSLINKvCNQIWVIEDRKV 598
                 69******************************************99865..58**********984689999999775 PP

>> TIGR01186  proV: glycine betaine/L-proline transport ATP binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.1   0.0     0.001     0.067       4      39 ..      17      52 ..      15      59 .. 0.91
   2 !   30.5   0.0   6.2e-10   4.2e-08      97     193 ..     175     268 ..     169     328 .. 0.82
   3 !    9.5   0.0    0.0015       0.1      11      50 ..     415     454 ..     410     467 .. 0.89
   4 !   14.1   0.0   6.1e-05    0.0041     108     208 ..     501     598 ..     483     607 .. 0.85

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 0.001
   TIGR01186  4 GlklgvndvdleieeGeiiviiGlsGsGkstlvrll 39
                G+k   +d++l++ +G  + +iG+ G+Gkst+++ +
  MMETSP1137-20121227|8395_1 17 GGKTLFHDAKLSLIHGRRYGLIGPNGCGKSTVMHAI 52
                77888899************************9876 PP

  == domain 2    score: 30.5 bits;  conditional E-value: 6.2e-10
   TIGR01186  97 ellkideqerkekalealklvdleeyedryPd.elsGGmqqrvGlaralaaePdlllmdeafsaldPlirdelqdelvklqkklqktivfithdldea 193
                 el++i ++  +++a   l  +++ e ++++P   +sGG + r+ laral ++P lll+de+   ld      l   l    +k ++t+v ++hd d  
  MMETSP1137-20121227|8395_1 175 ELADIGADSAEQRASAILSGLQFLEEQKNWPTaAFSGGWRMRISLARALFVKPRLLLLDEPTNHLDLHAVIWLEGYL----QKWKHTLVVVSHDRDFL 268
                 8999999999********99999666777775279*******************************77666665555....4567899******9865 PP

  == domain 3    score: 9.5 bits;  conditional E-value: 0.0015
   TIGR01186  11 dvdleieeGeiiviiGlsGsGkstlvrllnrliePtaGki 50 
                 dvd+ ++    + ++G  G+Gkstl++l+   + Pt+G++
  MMETSP1137-20121227|8395_1 415 DVDFGLNMDSRVALVGANGTGKSTLLKLMLSELTPTRGEV 454
                 67777777778899***************9999*****98 PP

  == domain 4    score: 14.1 bits;  conditional E-value: 6.1e-05
   TIGR01186 108 ekalealklvdleeyed.ryPdelsGGmqqrvGlaralaaePdlllmdeafsaldPlirdelqdelvklqkklqktivfithdldealrlgdrivilkaGei 208
                 +  ++al + +le++++ +  + lsGG++ rv  +        lll+de+   ld     e  d lvk  +  +  ++ ith++    +++++i ++++ ++
  MMETSP1137-20121227|8395_1 501 QEIRNALGKFGLEGHHHlQAIETLSGGQKSRVVFVELGLRRCHLLLLDEPTNHLDL----ETVDCLVKALHAFEGGVLVITHNVSLINKVCNQIWVIEDRKV 598
                 667899999***99998455688*********999999999**************6....45567777777888899999**99999999999998887665 PP

>> TIGR03258  PhnT: 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.9   0.0   0.00026     0.018      13      55 ..      11      53 ..       2      65 .. 0.89
   2 !   31.4   0.0   3.2e-10   2.1e-08     117     208 ..     186     273 ..     178     299 .. 0.75
   3 ?    4.9   0.0     0.036       2.4      11      59 ..     399     448 ..     391     459 .. 0.77
   4 !   13.1   0.0   0.00011    0.0076     121     218 ..     505     598 ..     492     616 .. 0.73

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 0.00026
   TIGR03258 13 slrvaygarvvlddlsleieaGellallGksGsGkttllrava 55
                +++++ g++++++d  l +  G    l+G+ G+Gk+t++ a+ 
  MMETSP1137-20121227|8395_1 11 KFSISRGGKTLFHDAKLSLIHGRRYGLIGPNGCGKSTVMHAIG 53
                6788999********************************9984 PP

  == domain 2    score: 31.4 bits;  conditional E-value: 3.2e-10
   TIGR03258 117 ervadalklvqlsdaaarlp.aqlsGGqqqrvalaralvvrpdvllldeplsaldaqlrasvveelkalhrelpeltvlyvthdrdealvlad 208
                 +r +  l  +q+ +  +++p a +sGG + r++laral v+p++llldep   ld +    +   l++      + t+++v+hdrd   ++  
  MMETSP1137-20121227|8395_1 186 QRASAILSGLQFLEEQKNWPtAAFSGGWRMRISLARALFVKPRLLLLDEPTNHLDLHAVIWLEGYLQKW-----KHTLVVVSHDRDFLTTVCT 273
                 455556677777777788883579******************************976655555555444.....4578899999986665555 PP

  == domain 3    score: 4.9 bits;  conditional E-value: 0.036
   TIGR03258  11 leslrvaygarv.vlddlsleieaGellallGksGsGkttllravaGfvk 59 
                 +++++  y+ +  ++ d+ + ++    +al+G  G+Gk+tll+++   + 
  MMETSP1137-20121227|8395_1 399 VDNVSFHYENQEdLFTDVDFGLNMDSRVALVGANGTGKSTLLKLMLSELT 448
                 6777777776541567888888888999**************98766555 PP

  == domain 4    score: 13.1 bits;  conditional E-value: 0.00011
   TIGR03258 121 dalklvqlsdaaa.rlpaqlsGGqqqrvalaralvvrpdvllldeplsaldaqlrasvveelkalhrelpeltvlyvthdrdealvladkillmkeGsl 218
                 +al   +l    + +  + lsGGq+ rv +      r ++llldep   ld +    +v   kalh    e  vl++th+ +    + ++i ++ + ++
  MMETSP1137-20121227|8395_1 505 NALGKFGLEGHHHlQAIETLSGGQKSRVVFVELGLRRCHLLLLDEPTNHLDLETVDCLV---KALHA--FEGGVLVITHNVSLINKVCNQIWVIEDRKV 598
                 5555555544333133468***********9999999**************98766665...56664..356778888887766667777777666665 PP

>> TIGR01187  potA: polyamine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.0     0.063       4.2       1      16 [.      37      52 ..      37      78 .. 0.82
   2 !   35.6   0.0   1.7e-11   1.2e-09      74     190 ..     181     294 ..     175     326 .. 0.80
   3 ?    3.8   0.1     0.078       5.3       1      27 [.     428     454 ..     428     462 .. 0.83
   4 !   16.5   0.0   1.1e-05   0.00074      81     173 ..     503     592 ..     494     612 .. 0.71

  Alignments for each domain:
  == domain 1    score: 4.2 bits;  conditional E-value: 0.063
   TIGR01187  1 lLGpsGsGkttlLrll 16
                l+Gp G+Gk+t++  +
  MMETSP1137-20121227|8395_1 37 LIGPNGCGKSTVMHAI 52
                79**********9876 PP

  == domain 2    score: 35.6 bits;  conditional E-value: 1.7e-11
   TIGR01187  74 kaeikervkeaLelvqleefakrkp.sqlsGGqrqrvalaravvkkPkiLLlDeplsaLDkkLrdqmqlelkalqeklGitvvlvthDqeealtmsdriavlrkGkiaqigepeeiye 190
                 ++  ++r  ++L+  q+ e  k  p   +sGG r r++lara+  kP++LLlDep   LD +    +   l++ +     t+v+v hD++   t+   i    + k++  +   e++e
  MMETSP1137-20121227|8395_1 181 ADSAEQRASAILSGLQFLEEQKNWPtAAFSGGWRMRISLARALFVKPRLLLLDEPTNHLDLHAVIWLEGYLQKWK----HTLVVVSHDRDFLTTVCTDILHCWRSKLVHYAGNYEVFE 294
                 56678899999999887666666661579*******************************776555555555554....588999999988888777777776777766666666655 PP

  == domain 3    score: 3.8 bits;  conditional E-value: 0.078
   TIGR01187   1 lLGpsGsGkttlLrllaGleeldsGki 27 
                 l+G+ G+Gk+tlL+l+    ++  G++
  MMETSP1137-20121227|8395_1 428 LVGANGTGKSTLLKLMLSELTPTRGEV 454
                 68************9877767777766 PP

  == domain 4    score: 16.5 bits;  conditional E-value: 1.1e-05
   TIGR01187  81 vkeaLelvqleefak.rkpsqlsGGqrqrvalaravvkkPkiLLlDeplsaLDkkLrdqmqlelkalqeklGitvvlvthDqeealtmsdriav 173
                 +++aL    le+  + + ++ lsGGq+ rv +      + ++LLlDep   LD +  d + + l+a++      v+++th+ +    + ++i v
  MMETSP1137-20121227|8395_1 503 IRNALGKFGLEGHHHlQAIETLSGGQKSRVVFVELGLRRCHLLLLDEPTNHLDLETVDCLVKALHAFEG----GVLVITHNVSLINKVCNQIWV 592
                 667777777777665145778********************************8777666555544432....234456665555555555555 PP

>> TIGR01184  ntrCD: nitrate ABC transporter, ATP-binding proteins C and D
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   0.0     0.012      0.82       3      31 ..      24      52 ..      22      97 .. 0.88
   2 !   26.4   0.0   1.5e-08     1e-06     104     176 ..     198     266 ..     181     276 .. 0.78
   3 !   27.7   0.1   5.7e-09   3.8e-07       3     176 ..     415     581 ..     413     595 .. 0.78

  Alignments for each domain:
  == domain 1    score: 7.0 bits;  conditional E-value: 0.012
   TIGR01184  3 dvdleikkgefislighsgcgkstllnli 31
                d +l++ +g    lig  gcgkst++  i
  MMETSP1137-20121227|8395_1 24 DAKLSLIHGRRYGLIGPNGCGKSTVMHAI 52
                6678888999999***********99877 PP

  == domain 2    score: 26.4 bits;  conditional E-value: 1.5e-08
   TIGR01184 104 lreaadkrpeqlsggmkqrvaiaralsirpklllldepfgaldaltreelqekllkiveearvtvlmvthdvd 176
                 l+e ++  ++ +sgg + r+++aral ++p+lllldep   ld  +   l+   l+   + + t ++v+hd d
  MMETSP1137-20121227|8395_1 198 LEEQKNWPTAAFSGGWRMRISLARALFVKPRLLLLDEPTNHLDLHAVIWLEGY-LQ---KWKHTLVVVSHDRD 266
                 455556667899******************************97666555443.33...34567788888866 PP

  == domain 3    score: 27.7 bits;  conditional E-value: 5.7e-09
   TIGR01184   3 dvdleikkgefislighsgcgkstllnliaglekptsgavilegkeitepgpdrmvvfqnysllpwltvrenialavdavlrdlskserreiveehielvglreaad.krpeqlsggmkqrvaiaralsirpklllldepfgaldaltreelqekllkiveearvtvlmvthdvd 176
                 dvd+ ++    ++l+g  g gkstll l+     pt g v+   +  +    ++    q  +    + ++ ++   v    ++ +    +e +++ +   gl+   + + +e lsgg k rv        r +lllldep   ld  t +     l+k ++  +  vl++th+v 
  MMETSP1137-20121227|8395_1 415 DVDFGLNMDSRVALVGANGTGKSTLLKLMLSELTPTRGEVRQ-SRSCKIGVYNQHSCDQLAA--GMRLAKGEVLSPVSYLAHTFPSMSTQE-IRNALGKFGLEGHHHlQAIETLSGGQKSRVVFVELGLRRCHLLLLDEPTNHLDLETVDC----LVKALHAFEGGVLVITHNVS 581
                 677788888899***************9999999****9974.4555444444444444333..345678888888999998888887777.578899999987766267899*********9998777899*************877655....56666667778899999885 PP

>> TIGR01271  CFTR_protein: cystic fibrosis transmembrane conductor regulator (CFTR)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.7   0.0    0.0065      0.44    1229    1265 ..      16      52 ..       7      57 .. 0.92
   2 !   15.6   0.0   6.5e-06   0.00044     548     582 ..     208     242 ..     203     272 .. 0.92
   3 !   35.1   0.1   8.7e-12   5.8e-10     431     621 ..     399     594 ..     367     614 .. 0.70

  Alignments for each domain:
  == domain 1    score: 5.7 bits;  conditional E-value: 0.0065
   TIGR01271 1229 eagravlqdlsfsveagqrvgllgrtgsgkstllsal 1265
                   +g+++++d  +s+  g+r gl+g  g+gkst++ a+
  MMETSP1137-20121227|8395_1   16 RGGKTLFHDAKLSLIHGRRYGLIGPNGCGKSTVMHAI 52  
                  6899*****************************9886 PP

  == domain 2    score: 15.6 bits;  conditional E-value: 6.5e-06
   TIGR01271 548 tlsggqrarislaravykdadlylldspfsyldvv 582
                 ++sgg r rislara++    l lld p ++ld+ 
  MMETSP1137-20121227|8395_1 208 AFSGGWRMRISLARALFVKPRLLLLDEPTNHLDLH 242
                 579*****************************975 PP

  == domain 3    score: 35.1 bits;  conditional E-value: 8.7e-12
   TIGR01271 431 fsnlslyv...tpvlknislklekgqllavagstgsgkssllmmilgelepsegkikhs..grisfspqvsw..impgt..ikdniifglsydeyrytsvikacqleediallaekdktvlgeggitlsggqrarislaravykdadlylldspfsyldvvtekeifesclckllan.k.trilvtsklehlkk.adkilllh 621
                   n+s++      ++ ++++ l+    +a+ g+ g+gks+ll ++l el p+ g ++ s   +i   +q s   +  g    k +++  +sy  + + s+  + ++ + + ++    +  l     tlsggq++r+ +     + + l lld p ++ld+ t       cl k l +     +++t  +  + k +++i ++ 
  MMETSP1137-20121227|8395_1 399 VDNVSFHYenqEDLFTDVDFGLNMDSRVALVGANGTGKSTLLKLMLSELTPTRGEVRQSrsCKIGVYNQHSCdqLAAGMrlAKGEVLSPVSYLAHTFPSM-STQEIRNALGKFGLEGHHHLQA-IETLSGGQKSRVVFVELGLRRCHLLLLDEPTNHLDLETV-----DCLVKALHAfEgGVLVITHNVSLINKvCNQIWVIE 594
                 456665531113567899999999999***************************9997522788877777642245553326899*********999996.6678999*****9999888864.569*************99*****************9885.....46666554312133444555555544135555554 PP

>> TIGR02633  xylG: D-xylose ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   0.0      0.01       0.7      15      47 ..      20      52 ..      12      81 .. 0.87
   2 !   20.9   0.0   3.4e-07   2.3e-05     377     439 ..     182     244 ..     165     283 .. 0.72
   3 !   10.4   0.0   0.00051     0.034      18      52 ..     414     449 ..     396     456 .. 0.79
   4 !   18.9   0.0   1.3e-06   8.8e-05     380     481 ..     500     598 ..     472     608 .. 0.81

  Alignments for each domain:
  == domain 1    score: 6.1 bits;  conditional E-value: 0.01
   TIGR02633 15 kaldnidlklraGeivslcGenGaGkstlmkvl 47
                + +++ +l l  G   +l G nG+Gkst+m  +
  MMETSP1137-20121227|8395_1 20 TLFHDAKLSLIHGRRYGLIGPNGCGKSTVMHAI 52
                556788999999******************865 PP

  == domain 2    score: 20.9 bits;  conditional E-value: 3.4e-07
   TIGR02633 377 aaelkaieeeikrlkvktaspdlpiarlsGGnqqkavlakllllnprvlildeptrGvdvGak 439
                 ++ ++  ++ ++ l+    + + p a++sGG + +  la+ l ++pr+l+ldept  +d+ a 
  MMETSP1137-20121227|8395_1 182 DSAEQRASAILSGLQFLEEQKNWPTAAFSGGWRMRISLARALFVKPRLLLLDEPTNHLDLHAV 244
                 444444444555555556666777888999999999999999999999999999999998774 PP

  == domain 3    score: 10.4 bits;  conditional E-value: 0.00051
   TIGR02633  18 dnidlklraGeivslcGenGaGkstlmkv.lsgvyp 52 
                  ++d+ l+    v+l G nG+Gkstl+k+ ls + p
  MMETSP1137-20121227|8395_1 414 TDVDFGLNMDSRVALVGANGTGKSTLLKLmLSELTP 449
                 678899999999****************72555555 PP

  == domain 4    score: 18.9 bits;  conditional E-value: 1.3e-06
   TIGR02633 380 lkaieeeikrlkvktaspdlpiarlsGGnqqkavlakllllnprvlildeptrGvdvGakyeiyklinqlaqeGvaiivvsselaevlGlsdrvlvigeGkl 481
                  + i++++ ++ +   +   +i +lsGG++ + v+  l l + ++l+ldept  +d+ +      l+++l +    ++v++ +++ +  +++++ vi++ k+
  MMETSP1137-20121227|8395_1 500 TQEIRNALGKFGLEGHHHLQAIETLSGGQKSRVVFVELGLRRCHLLLLDEPTNHLDLETVD---CLVKALHAFEGGVLVITHNVSLINKVCNQIWVIEDRKV 598
                 5678888889999999999999999999999999999999999999999999999997644...55555555555677778888888888888888877766 PP

>> TIGR00955  3a01204: pigment precursor permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.0     0.088       5.9      35      74 ..      16      55 ..       6      72 .. 0.80
   2 !   20.3   0.0   5.7e-07   3.8e-05     166     198 ..     208     240 ..     185     253 .. 0.91
   3 !    6.4   0.0    0.0089       0.6      50      72 ..     422     444 ..     379     460 .. 0.78
   4 !   19.9   0.0   7.6e-07   5.1e-05     164     212 ..     521     569 ..     498     615 .. 0.82

  Alignments for each domain:
  == domain 1    score: 3.1 bits;  conditional E-value: 0.088
   TIGR00955 35 kpekellknvsGvaksGellAvlGsSGaGKtTLlnalafr 74
                ++ k+l ++    +  G    ++G+ G GK+T + a+ + 
  MMETSP1137-20121227|8395_1 16 RGGKTLFHDAKLSLIHGRRYGLIGPNGCGKSTVMHAIGTG 55
                5567777777777778888899*************99765 PP

  == domain 2    score: 20.3 bits;  conditional E-value: 5.7e-07
   TIGR00955 166 glSgGerkRlalaselltdPilLfcDEPTsGLD 198
                 + SgG r R++la  l  +P lL++DEPT  LD
  MMETSP1137-20121227|8395_1 208 AFSGGWRMRISLARALFVKPRLLLLDEPTNHLD 240
                 68******************************9 PP

  == domain 3    score: 6.4 bits;  conditional E-value: 0.0089
   TIGR00955  50 sGellAvlGsSGaGKtTLlnala 72 
                     +A++G+ G GK+TLl+ + 
  MMETSP1137-20121227|8395_1 422 MDSRVALVGANGTGKSTLLKLML 444
                 55569**************9754 PP

  == domain 4    score: 19.9 bits;  conditional E-value: 7.6e-07
   TIGR00955 164 vkglSgGerkRlalaselltdPilLfcDEPTsGLDsfsaasvvkvLkkl 212
                 + +lSgG++ R+ + +  l   +lL++DEPT  LD  +   +vk+L+ +
  MMETSP1137-20121227|8395_1 521 IETLSGGQKSRVVFVELGLRRCHLLLLDEPTNHLDLETVDCLVKALHAF 569
                 468*****************************************99854 PP

>> TIGR00954  3a01203: peroxysomal long chain fatty acyl transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.4   0.1   8.6e-10   5.8e-08     464     639 ..      17     264 ..       5     270 .. 0.87
   2 !   25.3   0.0   1.6e-08   1.1e-06     452     643 ..     396     583 ..     342     588 .. 0.86

  Alignments for each domain:
  == domain 1    score: 29.4 bits;  conditional E-value: 8.6e-10
   TIGR00954 464 egdvlieeLsfevksGnhlLiiGPnGcGKsslfRilgelWPvygglltkpeegklFyvPqrPYmslg.tlRdqiiYPdssedfkerglsdkdLeqiLeevkLedlleregg.........................................................................wdavqdW.kdvLsgGekqRiamARlfyHkPkfavLDEctsAvsvdvEdklyelakevgitllsvshr 639
                  g+ l ++ ++ + +G+   +iGPnGcGKs ++  +g    v   +  +p+   +  v q    s   t  + ++  d+         + k+Le+ Lee  ++++   +                                                                           ++  ++W     sgG + Ri++AR ++ kP+  +LDE t+ + +     l   +++ + tl+ vsh 
  MMETSP1137-20121227|8395_1  17 GGKTLFHDAKLSLIHGRRYGLIGPNGCGKSTVMHAIGT-GEVEEIRNAIPPGMDILLVEQEVQASDEiTALQMVVSADTRRTALL--AEAKELEKTLEEGGVKYIKAAKLDgddfsvgakvkfegrvvtilegldkdgdytiqdvfdedgeiagrlsdvydeladigadsaeqrasailsglqfLEEQKNWpTAAFSGGWRMRISLARALFVKPRLLLLDEPTNHLDLHAVIWLEGYLQKWKHTLVVVSHD 264
                 67889999999999*********************985.567778889******************9888888887777665544..45689*******99999988777678999*******************************************************************99******44679****************************876665555556788888888888885 PP

  == domain 2    score: 25.3 bits;  conditional E-value: 1.6e-08
   TIGR00954 452 gikfeniplvtPegdvlieeLsfevksGnhlLiiGPnGcGKsslfR.ilgelWPvygglltkpeegklFyvPqrPY..mslg..tlRdqiiYPdssedfkerglsdkdLeqiLeevkLedllereggwdavqdWkdvLsgGekqRiamARlfyHkPkfavLDEctsAvsvdvEdklyelakevgitllsvshrksLw 643
                 ++ ++n+     + + l  ++ f ++  + + ++G nG GKs l + +l+el P++g +++  +++k+    q+    ++ g    +  ++ P s    +   +s +++ + L +  Le        ++a+    + LsgG+k R+ +  l   + +  +LDE t+ + ++  d l ++++ ++  +l ++h  sL+
  MMETSP1137-20121227|8395_1 396 ILAVDNVSFHYENQEDLFTDVDFGLNMDSRVALVGANGTGKSTLLKlMLSELTPTRGEVRQ-SRSCKIGVYNQHSCdqLAAGmrLAKGEVLSPVSYLAHTFPSMSTQEIRNALGKFGLEG----HHHLQAI----ETLSGGQKSRVVFVELGLRRCHLLLLDEPTNHLDLETVDCLVKALHAFEGGVLVITHNVSLI 583
                 5668899999999999***************************998458******987765.688999888888752255554244689**************************99863....4556665....79**********************************************************98 PP

>> TIGR02323  CP_lyasePhnK: phosphonate C-P lyase system protein PhnK
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.0      0.29        19      24      49 ..      29      54 ..      11      63 .. 0.83
   2 !   20.5   0.0   8.5e-07   5.7e-05     138     175 ..     205     242 ..     180     278 .. 0.77
   3 !   23.5   0.0     1e-07     7e-06       2      64 ..     395     459 ..     394     478 .. 0.89
   4 ?    1.9   0.0      0.43        29     140     215 ..     522     597 ..     509     601 .. 0.80

  Alignments for each domain:
  == domain 1    score: 2.5 bits;  conditional E-value: 0.29
   TIGR02323 24 lypGevlgivGesGsGkstllkalaa 49
                l  G+  g++G  G Gkst+++a+ +
  MMETSP1137-20121227|8395_1 29 LIHGRRYGLIGPNGCGKSTVMHAIGT 54
                5678899**************99975 PP

  == domain 2    score: 20.5 bits;  conditional E-value: 8.5e-07
   TIGR02323 138 kpaafsGGmqqrlqiarnlvtrprlvfm.eptGGlvsvq 175
                   aafsGG + r+ +ar+l  +prl+++ ept  l  + 
  MMETSP1137-20121227|8395_1 205 PTAAFSGGWRMRISLARALFVKPRLLLLdEPTNHL-DLH 242
                 3478************************9***887.333 PP

  == domain 3    score: 23.5 bits;  conditional E-value: 1e-07
   TIGR02323   2 pllevselsksygskkgcr..vsf.lypGevlgivGesGsGkstllkalaarlladaGevtyesrs 64 
                 p+l v ++s +y +++ ++  v+f l     +++vG  G+Gkstllk + ++l++++Gev+  srs
  MMETSP1137-20121227|8395_1 395 PILAVDNVSFHYENQEDLFtdVDFgLNMDSRVALVGANGTGKSTLLKLMLSELTPTRGEVRQ-SRS 459
                 89*************998768*****99*******************************985.444 PP

  == domain 4    score: 1.9 bits;  conditional E-value: 0.43
   TIGR02323 140 aafsGGmqqrlqiarnlvtrprlvfm.eptGGlvsvqarllllrglvrelglaviivth.lavarllaqrllvmkqGr 215
                 +++sGG + r+      + r +l+++ ept  l  +++   l+++l   ++  v+++th ++++  +++++ v++  +
  MMETSP1137-20121227|8395_1 522 ETLSGGQKSRVVFVELGLRRCHLLLLdEPTNHLD-LETVDCLVKALHA-FEGGVLVITHnVSLINKVCNQIWVIEDRK 597
                 589********9999999999999999***9983.3333446677665.88899999999999998888888887655 PP

>> TIGR01192  chvA: glucan exporter ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       6.6   4.4e+02     359     379 ..      30      50 ..      19      60 .. 0.81
   2 !   12.3   0.0   0.00015      0.01     471     508 ..     208     245 ..     167     286 .. 0.87
   3 !   17.6   0.0   3.7e-06   0.00025     337     393 ..     399     455 ..     375     476 .. 0.88
   4 !   15.5   0.0   1.6e-05    0.0011     471     556 ..     523     608 ..     517     630 .. 0.84

  Alignments for each domain:
  == domain 1    score: -3.0 bits;  conditional E-value: 6.6
   TIGR01192 359 kagqtvaivgptgagkttlin 379
                   g+   ++gp g gk+t++ 
  MMETSP1137-20121227|8395_1  30 IHGRRYGLIGPNGCGKSTVMH 50 
                 56777889*********9875 PP

  == domain 2    score: 12.3 bits;  conditional E-value: 0.00015
   TIGR01192 471 rlsggerqrlaiarailknapilvldeatsaldvetea 508
                  +sgg r r+++ara++    +l+lde t  ld+ + +
  MMETSP1137-20121227|8395_1 208 AFSGGWRMRISLARALFVKPRLLLLDEPTNHLDLHAVI 245
                 68*******************************98766 PP

  == domain 3    score: 17.6 bits;  conditional E-value: 3.7e-06
   TIGR01192 337 frdisfefanssqgvrdvsfeakagqtvaivgptgagkttlinllqrvydpksgqil 393
                   ++sf++ n ++   dv f       va+vg  g+gk+tl+ l+     p+ g++ 
  MMETSP1137-20121227|8395_1 399 VDNVSFHYENQEDLFTDVDFGLNMDSRVALVGANGTGKSTLLKLMLSELTPTRGEVR 455
                 579******************************************999999999875 PP

  == domain 4    score: 15.5 bits;  conditional E-value: 1.6e-05
   TIGR01192 471 rlsggerqrlaiarailknapilvldeatsaldvetearvkdaidalrknrttfiiahrlstvreadlvlfldqgrliek..gsfdel 556
                  lsgg++ r+      l+   +l+lde t  ld+et   + +a+ a++     ++i+h +s + +    +++ + r +++  g f+e 
  MMETSP1137-20121227|8395_1 523 TLSGGQKSRVVFVELGLRRCHLLLLDEPTNHLDLETVDCLVKALHAFE--GGVLVITHNVSLINKVCNQIWVIEDRKVNRfaGEFEEY 608
                 79**********************************988888998885..57899******999987777777777666433677775 PP

>> TIGR00957  MRP_assoc_pro: multi drug resistance-associated protein (MRP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.0      0.21        14     647     691 ..      15      60 ..       8      77 .. 0.80
   2 !   14.3   0.0   1.6e-05    0.0011     760     872 ..     208     314 ..     187     372 .. 0.71
   3 !   19.6   0.2     4e-07   2.7e-05     640     945 ..     400     705 ..     390     708 .. 0.59

  Alignments for each domain:
  == domain 1    score: 0.7 bits;  conditional E-value: 0.21
   TIGR00957 647 ardepptlngltlsipegalvavvgqvgcgkssllsal.laemdkv 691
                 +r+    ++  +ls+ +g    ++g+ gcgks+++ a+  +e++ +
  MMETSP1137-20121227|8395_1  15 SRGGKTLFHDAKLSLIHGRRYGLIGPNGCGKSTVMHAIgTGEVEEI 60 
                 5666666788889999999999************999834666665 PP

  == domain 2    score: 14.3 bits;  conditional E-value: 1.6e-05
   TIGR00957 760 nlsggqkqrvslaravysdadiyllddplsavdahvakhifekvigpkgllkn..ktrilvthgisylpqv..dviivlsdgkisemgsyqelldrdgafaeflrtyasaedeldae 872
                  +sgg + r+slara++ +  + lld+p   +d h        vi  +g l++  +t ++v+h   +l  v  d++       +   g+y+ +   +  fa  l +y ++ + ++ +
  MMETSP1137-20121227|8395_1 208 AFSGGWRMRISLARALFVKPRLLLLDEPTNHLDLHA-------VIWLEGYLQKwkHTLVVVSHDRDFLTTVctDILHCWRSKLVHYAGNYEVF---EKVFASKLEEYNKEYERQQKK 314
                 579*************************99999884.......78888988753268899999999998762255555666666677777654...457888888887654433332 PP

  == domain 3    score: 19.6 bits;  conditional E-value: 4e-07
   TIGR00957 640 knatftwardepptlngltlsipegalvavvgqvgcgkssllsallaemdkvegkvalkgsva.yvpqqawiqndslrenilfgkaleekyykavleacalladleilps....gdrteigekgv.nlsggqkqrvslaravysdadiyllddplsavdahvakhifekvigpkgllknktrilvthgisylpqv.dviivlsdgkisem.gsyqelldrdgafaeflrt.yasaedeldaeddgvasvsaedkeaklve.dgllvtdvvgkqlqrqlsas.ssdsedtsrhlsssaelqkaeak.eetwklmeadka 945
                  n +f + ++e   +  +++ +   + va+vg  g gks+ll  +l+e+    g+v    s    v +q   ++ +    +  g+ l +  y a       ++  ei  +    g +     + +  lsggqk rv +       + + lld+p   +d      + + +   +g       +++th++s + +v + i v+ d k+  + g ++e  d    +ae l   y ++ + ++ e + +a  +a + e   +e d       ++++  r+ +    s  e+  r  + +a    aea   +  + ++adk 
  MMETSP1137-20121227|8395_1 400 DNVSFHYENQE-DLFTDVDFGLNMDSRVALVGANGTGKSTLLKLMLSELTPTRGEVRQSRSCKiGVYNQHSCDQLAAGMRLAKGEVLSPVSYLAHTF--PSMSTQEIRNAlgkfGLEGHHHLQAIeTLSGGQKSRVVFVELGLRRCHLLLLDEPTNHLDLETVDCLVKALHAFEG-----GVLVITHNVSLINKVcNQIWVIEDRKVNRFaGEFEEYRDM---LAEQLNLlYDEDPEVKKRERERAA-AAALKAEDAALEaDPSKPKSKAQRERERKEAREaKSAREEAERAEKEAAAKAAAEAAaAAAAAKVKADKE 705
                 55555554433.4566788888889999999999999999999999999999999988777641477777777777777788888898888765432..2233334333310013333333344435899999999999999999999999999887777666655555544444.....2356799999998874678899999998753666665443...444443314444444444444333.3333334444440444445556666666554330333344444444333333444432445555666665 PP

>> TIGR03415  ABC_choXWV_ATP: choline ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.1      0.14       9.2      40      70 ..      22      52 ..      13      60 .. 0.87
   2 !   25.1   0.0   2.4e-08   1.6e-06     141     251 ..     184     291 ..     174     359 .. 0.67
   3 ?    3.3   0.1      0.11       7.1      53      83 ..     426     456 ..     414     481 .. 0.77
   4 ?    5.4   1.0     0.024       1.6     160     243 ..     519     598 ..     497     746 .. 0.79

  Alignments for each domain:
  == domain 1    score: 2.9 bits;  conditional E-value: 0.14
   TIGR03415 40 vadasldveeGeilvlmGlsGsGkssllrav 70
                 +da l++ +G    l+G  G Gks+++ a+
  MMETSP1137-20121227|8395_1 22 FHDAKLSLIHGRRYGLIGPNGCGKSTVMHAI 52
                5899************************998 PP

  == domain 2    score: 25.1 bits;  conditional E-value: 2.4e-08
   TIGR03415 141 rrkrveeqle.lvglaeWadkkvgelsGGmqqrvGlarafateadillmdePfsaldPliraklqdellelqkklkktivfvshdldealklGnriaimegGrivqlgtpee 251
                   +r+++ l  l  l+e ++  +  +sGG + r+ lara+ ++  +ll+deP   ld      l        +k k+t+v vshd d    + + i      ++v +    e
  MMETSP1137-20121227|8395_1 184 AEQRASAILSgLQFLEEQKNWPTAAFSGGWRMRISLARALFVKPRLLLLDEPTNHLDLHAVIWLEGY----LQKWKHTLVVVSHDRDFLTTVCTDILHCWRSKLVHYAGNYE 291
                 45555555541334555556667789*******************************7766666654....468899********998888888887777777776654444 PP

  == domain 3    score: 3.3 bits;  conditional E-value: 0.11
   TIGR03415  53 lvlmGlsGsGkssllravnglnpvsrGkvlv 83 
                 + l+G  G+Gks+ll+ +    + +rG+v+ 
  MMETSP1137-20121227|8395_1 426 VALVGANGTGKSTLLKLMLSELTPTRGEVRQ 456
                 5699***********9876666668998874 PP

  == domain 4    score: 5.4 bits;  conditional E-value: 0.024
   TIGR03415 160 kkvgelsGGmqqrvGlarafateadillmdePfsaldPliraklqdellelqkklkktivfvshdldealklGnriaimegGri 243
                 + ++ lsGG + rv +       + +ll+deP   ld     +  d l++  + ++  ++ ++h++    k+ n+i ++e+ ++
  MMETSP1137-20121227|8395_1 519 QAIETLSGGQKSRVVFVELGLRRCHLLLLDEPTNHLDL----ETVDCLVKALHAFEGGVLVITHNVSLINKVCNQIWVIEDRKV 598
                 45677*********999999999*************94....567999999999999999999999999999999999998776 PP

>> TIGR00630  uvra: excinuclease ABC subunit A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.4   0.0   0.00081     0.054     816     894 ..     194     268 ..     185     275 .. 0.68
   2 ?    3.4   0.0     0.054       3.6     620     660 ..     410     450 ..     379     473 .. 0.82
   3 !   17.1   0.1   3.9e-06   0.00026     812     896 ..     507     585 ..     488     594 .. 0.82

  Alignments for each domain:
  == domain 1    score: 9.4 bits;  conditional E-value: 0.00081
   TIGR00630 816 GLgYiklGq..pattLsGGeaqrvkLakeLskrstgktlyilDePttGLhfdDikkLlevlqrlvdkGntvvviehnldvi 894
                 GL++++  +  p+ ++sGG   r+ La+ L  +     l +lDePt  L ++ +  L   lq+     +t+vv+ h+ d +
  MMETSP1137-20121227|8395_1 194 GLQFLEEQKnwPTAAFSGGWRMRISLARALFVK---PRLLLLDEPTNHLDLHAVIWLEGYLQKW---KHTLVVVSHDRDFL 268
                 555554443114566788888888888888765...4588888888888777777666655554...46888888877755 PP

  == domain 2    score: 3.4 bits;  conditional E-value: 0.054
   TIGR00630 620 ennlkdidvsiplglltvitGvsgsGkstLindiLvkalee 660
                 e+ + d+d  + ++  +++ G  g GkstL++ +L + + +
  MMETSP1137-20121227|8395_1 410 EDLFTDVDFGLNMDSRVALVGANGTGKSTLLKLMLSELTPT 450
                 455679999999999****************9999877655 PP

  == domain 3    score: 17.1 bits;  conditional E-value: 3.9e-06
   TIGR00630 812 lvdvGLgYiklGqpattLsGGeaqrvkLakeLskrstgktlyilDePttGLhfdDikkLlevlqrlvdkGntvvviehnldviks 896
                 l + GL+  +  q+  tLsGG   rv +  eL  r  +  l +lDePt  L ++ +  L++ l+ +      v+vi hn+ +i +
  MMETSP1137-20121227|8395_1 507 LGKFGLEGHHHLQAIETLSGGQKSRVVF-VELGLRRCH--LLLLDEPTNHLDLETVDCLVKALHAFE---GGVLVITHNVSLINK 585
                 666777777777999***********76.577777665..899****************99999874...3599******99964 PP

>> TIGR01257  rim_protein: rim ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.7   0.0   0.00013    0.0087    2067    2138 ..     205     273 ..     127     283 .. 0.75
   2 !    9.2   0.0   0.00036     0.024    1967    2138 ..     425     588 ..     395     601 .. 0.72

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 0.00013
   TIGR01257 2067 lagtysggnkrklstaialigcpplvlldepttgmdpqarrmlwntivsiiregravvltshsmeecealct 2138
                   + ++sgg + ++s a al   p l+lldept  +d +a   l      + + ++++v+ sh  +   ++ct
  MMETSP1137-20121227|8395_1  205 PTAAFSGGWRMRISLARALFVKPRLLLLDEPTNHLDLHAVIWLEGY---LQKWKHTLVVVSHDRDFLTTVCT 273 
                  46789*******************************9885443322...33445666777777777777776 PP

  == domain 2    score: 9.2 bits;  conditional E-value: 0.00036
   TIGR01257 1967 cfgllgvngagktttfkmltgdttvtsgdatvagksiltnisdvhqnmgycpqfdaiddlltgrehlylyarlrgvpaeeiekvanwsikslglslyadrla.gtysggnkrkls.taialigcpplvlldepttgmdpqarrmlwntivsiiregravvltshsmeecealct 2138
                   + l+g ng+gk+t +k++  + t t g+     +s    + + h     c q+ a   l  g     +    +  p+   +++ n ++  +gl  +    a  t sgg+k ++    + l  c  l+lldept  +d ++   l +++ +   eg  v++ +h +   + +c 
  MMETSP1137-20121227|8395_1  425 RVALVGANGTGKSTLLKLMLSELTPTRGEVRQ-SRSCKIGVYNQH----SCDQLAAGMRLAKGEVLSPVSYLAHTFPSMSTQEIRN-ALGKFGLEGHHHLQAiETLSGGQKSRVVfVELGLRRC-HLLLLDEPTNHLDLETVDCLVKALHAF--EG-GVLVITHNVSLINKVCN 588 
                  56899**********************99764.455555555444....6999999888888765443333345667766666666.5677888776665442799**9997765166778777.58999******9999888777665543..33.34444466666666665 PP

>> TIGR01194  cyc_pep_trnsptr: cyclic peptide transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.0      0.25        17     371     385 ..      36      50 ..      22      56 .. 0.79
   2 ?    2.3   0.0      0.15        10     460     533 ..     200     268 ..     171     285 .. 0.75
   3 !   11.6   0.0   0.00024     0.016     364     398 ..     420     454 ..     397     460 .. 0.86
   4 ?   -3.5   0.0       8.6   5.8e+02     468     496 ..     522     550 ..     501     556 .. 0.85

  Alignments for each domain:
  == domain 1    score: 1.6 bits;  conditional E-value: 0.25
   TIGR01194 371 yivGenGcGkstlik 385
                  ++G nGcGkst++ 
  MMETSP1137-20121227|8395_1  36 GLIGPNGCGKSTVMH 50 
                 579*********975 PP

  == domain 2    score: 2.3 bits;  conditional E-value: 0.15
   TIGR01194 460 edlnystttdlstGqrkrlalvnayleerpvllldewaadqdpafkrvfyeellpdlkrrGktilvishddryf 533
                 e+ n+  t+++s G r r++l  a + +  +lllde +   d   + v + e    l++   t++v+shd  ++
  MMETSP1137-20121227|8395_1 200 EQKNWP-TAAFSGGWRMRISLARALFVKPRLLLLDEPTNHLDL--HAVIWLE--GYLQKWKHTLVVVSHDRDFL 268
                 456777.99***************9999999*****9988884..5555544..34666678999999997765 PP

  == domain 3    score: 11.6 bits;  conditional E-value: 0.00024
   TIGR01194 364 iasGelvyivGenGcGkstliklllGlyipqeGel 398
                 ++    v +vG nG Gkstl+kl+l    p  Ge+
  MMETSP1137-20121227|8395_1 420 LNMDSRVALVGANGTGKSTLLKLMLSELTPTRGEV 454
                 555566889*********************99997 PP

  == domain 4    score: -3.5 bits;  conditional E-value: 8.6
   TIGR01194 468 tdlstGqrkrlalvnayleerpvllldew 496
                   ls Gq+ r+ +v   l    +lllde 
  MMETSP1137-20121227|8395_1 522 ETLSGGQKSRVVFVELGLRRCHLLLLDEP 550
                 5799***********99999999999995 PP

>> TIGR00956  3a01205: pleiotropic drug resistance family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.0     0.023       1.5     907     937 ..     214     243 ..     207     257 .. 0.77
   2 ?    1.9   0.0       0.1       6.9     792     809 ..     426     443 ..     377     503 .. 0.71
   3 !    7.3   0.0    0.0024      0.16     208     254 ..     522     568 ..     517     604 .. 0.85

  Alignments for each domain:
  == domain 1    score: 4.0 bits;  conditional E-value: 0.023
   TIGR00956 907 RkrltigveLvAkPklllFlDePtsGLDsqt 937
                 R r++++  L  kP  ll lDePt  LD ++
  MMETSP1137-20121227|8395_1 214 RMRISLARALFVKP-RLLLLDEPTNHLDLHA 243
                 77888888888888.5667899998888665 PP

  == domain 2    score: 1.9 bits;  conditional E-value: 0.1
   TIGR00956 792 tALmGasGAGkttLlnvL 809
                  AL+Ga G Gk tLl  +
  MMETSP1137-20121227|8395_1 426 VALVGANGTGKSTLLKLM 443
                 466666666666666542 PP

  == domain 3    score: 7.3 bits;  conditional E-value: 0.0024
   TIGR00956 208 RGvsGGerkRvsiaevlvakakiqcwDnatrGLDsatalefvkalkt 254
                   +sGG++ Rv   e  + + +++++D+ t  LD  t   +vkal++
  MMETSP1137-20121227|8395_1 522 ETLSGGQKSRVVFVELGLRRCHLLLLDEPTNHLDLETVDCLVKALHA 568
                 56899999999999999999999999999999999999999999876 PP

>> TIGR03499  FlhF: flagellar biosynthesis protein FlhF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.0      0.62        41     198     213 ..      32      47 ..      21      52 .. 0.85
   2 ?    2.2   0.0      0.46        31     200     213 ..     425     438 ..     410     443 .. 0.83
   3 !   10.6   5.8    0.0013      0.09      56     153 ..     645     742 ..     594     779 .. 0.63

  Alignments for each domain:
  == domain 1    score: 1.8 bits;  conditional E-value: 0.62
   TIGR03499 198 ggviaLvGptGvGKTT 213
                 g+ + L+Gp G GK T
  MMETSP1137-20121227|8395_1  32 GRRYGLIGPNGCGKST 47 
                 56789*********99 PP

  == domain 2    score: 2.2 bits;  conditional E-value: 0.46
   TIGR03499 200 viaLvGptGvGKTT 213
                  +aLvG  G GK T
  MMETSP1137-20121227|8395_1 425 RVALVGANGTGKST 438
                 58**********98 PP

  == domain 3    score: 10.6 bits;  conditional E-value: 0.0013
   TIGR03499  56 sasaaseeeeakkaleeaepkklskaeekeekekeaeekaaeaaqeaekkleeaeeelrkelkalkellekqlselaleeedperakllkklleagvs 153
                 + +a+ +++++k++ e+++++++++++++ee+e+  +e+aa+aa+ea+ ++++a+ +  ke ++ + l e+ql+++a + +  +  + +++ll+ g  
  MMETSP1137-20121227|8395_1 645 ALEADPSKPKSKAQRERERKEAREAKSAREEAERAEKEAAAKAAAEAAAAAAAAKVKADKEQAEAQLLRESQLAQAAISARALPLHECMAQLLATGRA 742
                 33333334444444444444444444444444444444444555555555555556667777777777777777766566777777777777776655 PP

>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.4   0.0   7.6e-05    0.0051      27      43 ..      36      52 ..      25      53 .. 0.92
   2 ?   -1.9   0.1       1.6   1.1e+02     876     895 ..     300     319 ..     286     347 .. 0.53
   3 ?   -2.4   0.0       2.3   1.5e+02      26      37 ..     426     437 ..     416     439 .. 0.86
   4 ?   -0.0  12.5      0.42        28     699     877 ..     620     711 ..     583     741 .. 0.34

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 7.6e-05
   TIGR02168 27 giVGPNGcGKSNivDAi 43
                g +GPNGcGKS ++ Ai
  MMETSP1137-20121227|8395_1 36 GLIGPNGCGKSTVMHAI 52
                89************998 PP

  == domain 2    score: -1.9 bits;  conditional E-value: 1.6
   TIGR02168 876 eleellkekasleealaelr 895
                 +lee +ke+++++++l+elr
  MMETSP1137-20121227|8395_1 300 KLEEYNKEYERQQKKLKELR 319
                 22222222222222222222 PP

  == domain 3    score: -2.4 bits;  conditional E-value: 2.3
   TIGR02168  26 tgiVGPNGcGKS 37 
                 ++ VG NG GKS
  MMETSP1137-20121227|8395_1 426 VALVGANGTGKS 437
                 89*********9 PP

  == domain 4    score: -0.0 bits;  conditional E-value: 0.42
   TIGR02168 699 ekelkelekeleeleeeleklrkeleelerklselkkelerlekeveqleerlaqlekeleeleeereeleeeleeaeeelkeaeeeieeleaeieqlkeelkalrealseleaeltelkeeaaekeerleslekeiaalekeleeleeqieeleeeiesleaeieeleeeleeleeel 877
                  +e  e++k+ +e + +++ l++e   le + s+ k++++r++++ e+ e++ a++e+e++e e+  ++++e+ + a                                                                                        ++ ++++e++e++l
  MMETSP1137-20121227|8395_1 620 YDEDPEVKKRERERA-AAAALKAEDAALEADPSKPKSKAQRERERKEAREAKSAREEAERAEKEAAAKAAAEAAAAAA--------------------------------------------------------------------------------------AAKVKADKEQAEAQL 711
                 222222222111111.22222222222222222222222222222222222222222222222222222222111111......................................................................................111111111111111 PP

>> TIGR00152  TIGR00152: dephospho-CoA kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.0      0.16        11       3      19 ..      36      52 ..      35      61 .. 0.89
   2 ?    6.1   0.0     0.029       1.9       2      19 ..     426     443 ..     425     449 .. 0.88

  Alignments for each domain:
  == domain 1    score: 3.7 bits;  conditional E-value: 0.16
   TIGR00152  3 gltGgigsGKstvakil 19
                gl+G  g+GKstv++++
  MMETSP1137-20121227|8395_1 36 GLIGPNGCGKSTVMHAI 52
                899**********9987 PP

  == domain 2    score: 6.1 bits;  conditional E-value: 0.029
   TIGR00152   2 igltGgigsGKstvakil 19 
                 ++l+G  g+GKst++k++
  MMETSP1137-20121227|8395_1 426 VALVGANGTGKSTLLKLM 443
                 89************9986 PP

>> TIGR00929  VirB4_CagE: type IV secretion/conjugal transfer ATPase, VirB4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0       3.5   2.4e+02     442     455 ..      37      50 ..      36      52 .. 0.88
   2 ?    7.9   0.0    0.0024      0.16     428     461 ..     404     447 ..     401     453 .. 0.82

  Alignments for each domain:
  == domain 1    score: -2.5 bits;  conditional E-value: 3.5
   TIGR00929 442 IfGptgsGKTvlln 455
                 ++Gp+g GK++ + 
  MMETSP1137-20121227|8395_1  37 LIGPNGCGKSTVMH 50 
                 59*********996 PP

  == domain 2    score: 7.9 bits;  conditional E-value: 0.0024
   TIGR00929 428 fHvrdake..........vlGhTlIfGptgsGKTvllnfllaql 461
                 fH ++++           +   ++++G++g+GK++ll+++l++l
  MMETSP1137-20121227|8395_1 404 FHYENQEDlftdvdfglnMDSRVALVGANGTGKSTLLKLMLSEL 447
                 777776557777777777888899***************99987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (912 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       460  (0.11214); expected 82.0 (0.02)
Passed bias filter:                      208  (0.050707); expected 82.0 (0.02)
Passed Vit filter:                        93  (0.0226719); expected 4.1 (0.001)
Passed Fwd filter:                        64  (0.0156021); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              61  [number of targets reported over threshold]
# CPU time: 2.24u 0.21s 00:00:02.45 Elapsed: 00:00:01.44
# Mc/sec: 835.93
//
Query:       MMETSP1137-20121227|8396_1  [L=328]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (328 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       132  (0.0321794); expected 82.0 (0.02)
Passed bias filter:                      116  (0.0282789); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.16s 00:00:00.43 Elapsed: 00:00:00.97
# Mc/sec: 446.31
//
Query:       MMETSP1137-20121227|8397_1  [L=348]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (348 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        87  (0.0212092); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.12s 00:00:00.38 Elapsed: 00:00:00.39
# Mc/sec: 1177.75
//
Query:       MMETSP1137-20121227|8398_1  [L=434]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (434 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        66  (0.0160897); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.17s 00:00:00.46 Elapsed: 00:00:00.38
# Mc/sec: 1507.45
//
Query:       MMETSP1137-20121227|8399_1  [L=131]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.1e-30  101.2   0.0    8.1e-30  101.0   0.0    1.0  1  TIGR03677 rpl7ae: 50S ribosomal protein L7Ae


Domain annotation for each model (and alignments):
>> TIGR03677  rpl7ae: 50S ribosomal protein L7Ae
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  101.0   0.0     2e-33   8.1e-30       9     116 ..      20     129 ..      14     130 .. 0.89

  Alignments for each domain:
  == domain 1    score: 101.0 bits;  conditional E-value: 2e-33
   TIGR03677   9 eladkaleavekaretGkikkGtnevtkaverGiaklvviaedvePeeivahlpalceekkipyvyvkkkedlGkaaGlevsaaavaiv.deGk.aeelleeivekveel 116
                 +l+   l++v++a +  ++kkG+ne+tk+++rGia+l+v+a+d eP ei+ hlp lce+k++pyv+v +k++lG+++G++ +  + +i+ +eG+  +++++++ +++e+l
  MMETSP1137-20121227|8399_1  20 QLTVTILDVVQQAANFKQLKKGANEATKTLNRGIAELIVMAADAEPLEILLHLPLLCEDKNVPYVFVPHKQALGRSCGVSRPVISCSITtNEGSqLKNQIQQLKDSIEKL 129
                 5666789*************************************************************************998888886255641577888888888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (131 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       236  (0.0575329); expected 82.0 (0.02)
Passed bias filter:                      209  (0.0509508); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.18u 0.13s 00:00:00.31 Elapsed: 00:00:00.34
# Mc/sec: 508.55
//
Query:       MMETSP1137-20121227|8400_1  [L=688]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00078   16.9   0.0     0.0016   15.8   0.0    1.5  1  TIGR00633 xth: exodeoxyribonuclease III (xth)


Domain annotation for each model (and alignments):
>> TIGR00633  xth: exodeoxyribonuclease III (xth)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0     4e-07    0.0016      11      78 ..     554     627 ..     552     677 .. 0.74

  Alignments for each domain:
  == domain 1    score: 15.8 bits;  conditional E-value: 4e-07
   TIGR00633  11 lrarlkklflellkeekpDvlclQEtKvaeeqlpkell.....eeegYevafssakkk.gysGvallskeepes 78 
                 ++a    ++++++k+ek Dv++lQE  v++++ ++ +      ++ gY+ +   + ++ +  G+a+l  +++ +
  MMETSP1137-20121227|8400_1 554 ITANKFYKTVATMKNEKIDVIALQELNVHRKDRHTIDAhkntaQTLGYKLFLAPTATPtQIGGTAILISQTLLD 627
                 555555567899****************986543322223444999*****999887779999**998887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (688 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        70  (0.0170648); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.15s 00:00:00.60 Elapsed: 00:00:00.43
# Mc/sec: 2111.83
//
Query:       MMETSP1137-20121227|8401_1  [L=156]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (156 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        65  (0.0158459); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.16s 00:00:00.34 Elapsed: 00:00:00.33
# Mc/sec: 623.95
//
Query:       MMETSP1137-20121227|8402_1  [L=188]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (188 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        49  (0.0119454); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.13s 00:00:00.31 Elapsed: 00:00:00.35
# Mc/sec: 708.97
//
Query:       MMETSP1137-20121227|8403_1  [L=495]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (495 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       111  (0.02706); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.23s 00:00:00.49 Elapsed: 00:00:00.68
# Mc/sec: 960.80
//
Query:       MMETSP1137-20121227|8405_1  [L=198]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.8e-24   81.8   0.4    1.4e-23   81.4   0.2    1.3  1  TIGR03044 PS_II_psb27: photosystem II protein Psb27


Domain annotation for each model (and alignments):
>> TIGR03044  PS_II_psb27: photosystem II protein Psb27
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.4   0.2   3.3e-27   1.4e-23      29     135 .]      90     197 ..      63     197 .. 0.92

  Alignments for each domain:
  == domain 1    score: 81.4 bits;  conditional E-value: 3.3e-27
   TIGR03044  29 akasltGdyaeDtlaviktlreaielpedaenkeeaqaearelindyisrYrrrskvnklssFtTmqTalnslaghYksyanR.PlpeklkeRlekelkkaekavkre 135
                    +l  dy  D+  + +++r a el   +++ ee+ + +r+ + d+++ Yrr++kv+++ sF T+ Ta+n+l+ghY+sy+n+ P+pek ++Rl++++k++e+a++r+
  MMETSP1137-20121227|8405_1  90 DIYKLKKDYPVDAKQMLTNMRVATELQRGNPDMEEIVKATRAEMIDFVAFYRRQPKVSGMPSFSTLYTAINTLSGHYASYGNKyPVPEKRRTRLAQQYKEIERALARG 197
                 45678899*************************************************************************977*********************996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (198 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       161  (0.0392491); expected 82.0 (0.02)
Passed bias filter:                      131  (0.0319356); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.15u 0.19s 00:00:00.34 Elapsed: 00:00:00.70
# Mc/sec: 373.34
//
Query:       MMETSP1137-20121227|8406_1  [L=204]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (204 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        88  (0.0214529); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.16s 00:00:00.37 Elapsed: 00:00:00.40
# Mc/sec: 673.14
//
Query:       MMETSP1137-20121227|8408_1  [L=60]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        37  (0.00901999); expected 82.0 (0.02)
Passed bias filter:                       37  (0.00901999); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.16s 00:00:00.31 Elapsed: 00:00:00.67
# Mc/sec: 118.20
//
Query:       MMETSP1137-20121227|8409_1  [L=362]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (362 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       102  (0.0248659); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.16s 00:00:00.41 Elapsed: 00:00:00.43
# Mc/sec: 1111.16
//
Query:       MMETSP1137-20121227|8410_1  [L=517]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (517 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       258  (0.0628961); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.16s 00:00:00.54 Elapsed: 00:00:00.46
# Mc/sec: 1483.44
//
Query:       MMETSP1137-20121227|8411_1  [L=365]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.1e-15   55.2   0.0    1.7e-15   54.6   0.0    1.2  1  TIGR03466 HpnA: hopanoid-associated sugar epimerase
    5.8e-13   46.2   0.0    6.1e-11   39.5   0.0    2.3  2  TIGR01179 galE: UDP-glucose 4-epimerase
    3.5e-08   31.2   0.2    2.1e-06   25.3   0.0    2.1  2  TIGR01777 yfcH: TIGR01777 family protein
    2.3e-07   28.0   0.2    6.6e-06   23.2   0.1    2.4  2  TIGR04180 EDH_00030: NAD dependent epimerase/dehydratase, LLPSF_EDH_00030 family
    4.2e-07   27.3   0.0    0.00033   17.8   0.0    2.3  2  TIGR01746 Thioester-redct: thioester reductase domain
    3.9e-05   20.8   0.0    5.7e-05   20.2   0.0    1.3  1  TIGR02197 heptose_epim: ADP-glyceromanno-heptose 6-epimerase
    0.00013   19.0   0.0    0.00016   18.7   0.0    1.2  1  TIGR01214 rmlD: dTDP-4-dehydrorhamnose reductase
     0.0023   15.3   0.0     0.0035   14.7   0.0    1.3  1  TIGR03649 ergot_EASG: ergot alkaloid biosynthesis protein, AFUA_2G17970 family
     0.0026   14.8   0.0      0.047   10.6   0.0    2.5  2  TIGR02622 CDP_4_6_dhtase: CDP-glucose 4,6-dehydratase
      0.004   14.0   0.5      0.079    9.7   0.2    2.3  2  TIGR03589 PseB: UDP-N-acetylglucosamine 4,6-dehydratase


Domain annotation for each model (and alignments):
>> TIGR03466  HpnA: hopanoid-associated sugar epimerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.6   0.0   4.1e-18   1.7e-15       2     159 ..      46     202 ..      45     214 .. 0.79

  Alignments for each domain:
  == domain 1    score: 54.6 bits;  conditional E-value: 4.1e-18
   TIGR03466   2 kvlvtGatGFvGsavvrllleeGeevrvlvrktsdrrnleeldvEiveGdlkdeaslkkalkGcealfHvAAdy..rlwakdpeelykanvegtravleaAleagvervvytssvatlgvkedgkeadettpsklekmiG...hYkrskflAEqaveelaae.g 159
                 kv+v GatG++G +++r+l e+G  v  + r++++        vE ++ dl++++s+ k  +  +  f vA +    l + + ++ +++n+ gtr+ ++aAl+ag +++v +ssvat+g+++   + ++   +  ++  G   +Y  sk   Eq +  +++e g
  MMETSP1137-20121227|8411_1  46 KVVVSGATGWIGGKLARELSEDGLPVTGVSRRETKIDG-----VESLQLDLSSTESMYKGFSQNK--FDVAVHMagTLGKCTLQQAVDINIAGTRRFVQAALDAGCKKIVVASSVATMGTQAPMYPPKKLPLAADAQFQGapwPYAYSKDAVEQLIDFMSKEeG 202
                 799*****************************999777.....5556668999999999887544..444444311688899999**********************************998876666654334444444323799999999999999888753 PP

>> TIGR01179  galE: UDP-glucose 4-epimerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.5   0.0   1.5e-13   6.1e-11       1     181 [.      46     221 ..      46     228 .. 0.81
   2 !    4.2   0.0    0.0082       3.4     262     317 ..     301     356 ..     266     363 .. 0.58

  Alignments for each domain:
  == domain 1    score: 39.5 bits;  conditional E-value: 1.5e-13
   TIGR01179   1 kiLvtGgaGyiGshvvrqllekgkevvvlDnlskgskealkalekitevklvegdladkekleavleeekidaviHfaaliavgEsvkePlkYYennvvntleLleamqkagvkkliFsssaavYge......sekvpisEespln.pinpYGrsklmvErilkdlkka..dkelkvviLRYFnvaGAde 181
                 k++v+G++G+iG + +r+l+e g  v  +   s   ++ +  +e       ++ dl+ +e++ + ++++k+d  +H+a++   +  +++     + n+ +t + ++a  +ag+kk++ +ss a+ g+      ++k+p+  +++ + +  pY  sk +vE++++ ++k   +++ +++i+R  nv+  ++
  MMETSP1137-20121227|8411_1  46 KVVVSGATGWIGGKLARELSEDGLPVTGV---S-RRETKIDGVE------SLQLDLSSTESMYKGFSQNKFDVAVHMAGTLG-KCTLQQA---VDINIAGTRRFVQAALDAGCKKIVVASSVATMGTqapmypPKKLPLAADAQFQgAPWPYAYSKDAVEQLIDFMSKEegNEDVDFIIVRIGNVVEVSP 221
                 689********************987543...3.2344455555......6889*************************864.3344444...578****************************99833333346889999988886889*************988765226899999999999986655 PP

  == domain 2    score: 4.2 bits;  conditional E-value: 0.0082
   TIGR01179 262 fsvkevieav...kkvsgkdikveladrRaGDpaslvadaskikrelgwkpkyddLeei 317
                 +sv ++i+ +   +++s  d++   +  R+ D    + d s +k+elgw+pk d L+  
  MMETSP1137-20121227|8411_1 301 HSVPDIIRSMygdEAASKIDMSHYSKRGRERD---PLYDLSAAKKELGWEPKVDLLDYA 356
                 45555555543222333333333333334444...456888999*********988765 PP

>> TIGR01777  yfcH: TIGR01777 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.3   0.0   5.2e-09   2.1e-06       1      67 [.      47     115 ..      47     163 .. 0.71
   2 ?    3.8   0.0     0.019       7.6     198     239 ..     266     309 ..     261     319 .. 0.83

  Alignments for each domain:
  == domain 1    score: 25.3 bits;  conditional E-value: 5.2e-09
   TIGR01777   1 vlitGgtGliGralveelekkghevviltrskekekeekkesakevaeeaeee..alegvdavinLaGe 67 
                 v+++G+tG iG +l++el+++g  v+ ++r+++k    ++ + +  ++e+  +  +++++d+ +++aG 
  MMETSP1137-20121227|8411_1  47 VVVSGATGWIGGKLARELSEDGLPVTGVSRRETKIDGVESLQLDLSSTESMYKgfSQNKFDVAVHMAGT 115
                 79******************************97665554444444333333356999**********6 PP

  == domain 2    score: 3.8 bits;  conditional E-value: 0.019
   TIGR01777 198 ihleDlvklilfaleneevsGv..vNataPepvrnkefakalak 239
                 i+l+D+v+ ++ a+e ++ sGv  v ++aP+    +++ + +++
  MMETSP1137-20121227|8411_1 266 IALSDQVDCLKAAVEADHKSGVrtVACVAPTAYAVHSVPDIIRS 309
                 99*******************85578899999888877776665 PP

>> TIGR04180  EDH_00030: NAD dependent epimerase/dehydratase, LLPSF_EDH_00030 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.2   0.1   1.6e-08   6.6e-06       1     156 [.      47     194 ..      47     212 .. 0.73
   2 ?   -2.6   0.0       1.2   4.9e+02     216     295 ..     270     349 ..     268     351 .. 0.62

  Alignments for each domain:
  == domain 1    score: 23.2 bits;  conditional E-value: 1.6e-08
   TIGR04180   1 vlvtGadGfiGshlvealvekGaevralvlynsfnswGwldevekevkkeievvlGdirdaesvkkav..kgvdvvfhlaaliaiPysyvapesyvetnvkGtlnvlqaardlevekvvhtstsevyGta......qyvPidekhplqaq.sPysaskigadqla 156
                 v+v+Ga G+iG  l+ +l e+G  v+ + + ++              ++ +e ++ d+  +es+ k    ++ dv +h+a  ++      + ++ v+ n+ Gt   +qaa d++ +k+v +s+  + Gt       + +P+  + + q+   Py+ sk + +ql 
  MMETSP1137-20121227|8411_1  47 VVVSGATGWIGGKLARELSEDGLPVTGVSRRET-------------KIDGVESLQLDLSSTESMYKGFsqNKFDVAVHMAGTLG----KCTLQQAVDINIAGTRRFVQAALDAGCKKIVVASSVATMGTQapmyppKKLPLAADAQFQGApWPYAYSKDAVEQLI 194
                 678999999999999999999999988766433.............34455555666666666666441145667777777666....5677888*********************************9622222244566655555543259999998888875 PP

  == domain 2    score: -2.6 bits;  conditional E-value: 1.2
   TIGR04180 216 dtvegfiavaesdkavG.evinigsnfeisigdtvkliaeilgkeveivtdeerlrPekseverlladnskikeltgwkpk 295
                 d v+ + a +e+d+  G +++ + + +  +++ + ++i+++ g e   + d +    +  e + l+ d s +k+ +gw+pk
  MMETSP1137-20121227|8411_1 270 DQVDCLKAAVEADHKSGvRTVACVAPTAYAVHSVPDIIRSMYGDEAASKIDMSHYSKRGRERDPLY-DLSAAKKELGWEPK 349
                 667777777777766663566666777777777777777777776666666666655555655554.55666666677766 PP

>> TIGR01746  Thioester-redct: thioester reductase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.1   0.0    0.0014      0.59       1      41 [.      46      84 ..      46      97 .. 0.77
   2 !   17.8   0.0   8.1e-07   0.00033     109     196 ..     125     217 ..      94     222 .. 0.75

  Alignments for each domain:
  == domain 1    score: 7.1 bits;  conditional E-value: 0.0014
   TIGR01746  1 tvlLTGAtGfLGaylleeLlrrsteakviClVRakseehal 41
                +v++ GAtG++G +l++eL ++     v+   R +++ ++ 
  MMETSP1137-20121227|8411_1 46 KVVVSGATGWIGGKLARELSEDG--LPVTGVSRRETKIDGV 84
                599****************9886..6666666666665555 PP

  == domain 2    score: 17.8 bits;  conditional E-value: 8.1e-07
   TIGR01746 109 raaNVegtvevlrlaasgkakpliyvStlsv...laaielsakvevddatetkkpglatGYaqSKwvaEllvreasdr....glpvtivRpGril 196
                    N++gt+  ++ a+   +k+++  S++++   +a++++++  ++  a++++ +g   +Ya SK + E+l++  s++     +++ ivR+G+++
  MMETSP1137-20121227|8411_1 125 VDINIAGTRRFVQAALDAGCKKIVVASSVATmgtQAPMYPPK--KLPLAADAQFQGAPWPYAYSKDAVEQLIDFMSKEegneDVDFIIVRIGNVV 217
                 457******************988877766510044444444..888888889999999*************987777666799*********97 PP

>> TIGR02197  heptose_epim: ADP-glyceromanno-heptose 6-epimerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   0.0   1.4e-07   5.7e-05       1     150 [.      47     195 ..      47     216 .. 0.74

  Alignments for each domain:
  == domain 1    score: 20.2 bits;  conditional E-value: 1.4e-07
   TIGR02197   1 iivTGgaGfiGsnlvaalnekgetdilvvDklrkgekllnlkdeeiadyidkeellerlekeelkkveavfHegAisdTteldgellmenNyeyskellelcaekev.kliYASSAavYGdseeefreekele........rPlNvYgySKllfDelvr 150
                 ++v G+ G iG +l+ +l e+g   + v    r+++k+ +++  ++ d  + e++ + +++   +k+++ +H++      +l++   ++ N++ ++++++++++ +  k++ ASS a+ G+++  +  +k l              Y+ySK  +++l+ 
  MMETSP1137-20121227|8411_1  47 VVVSGATGWIGGKLARELSEDG---LPVTGVSRRETKIDGVESLQL-DLSSTESMYKGFSQ---NKFDVAVHMAGTLGKCTLQQ--AVDINIAGTRRFVQAALDAGCkKIVVASSVATMGTQAPMYPPKK-LPlaadaqfqGAPWPYAYSKDAVEQLID 195
                 689*****************99...445555667779998887775.77788888888887...69*******87666555554..4799**************98625779********7654443333.2224444454444679999998888875 PP

>> TIGR01214  rmlD: dTDP-4-dehydrorhamnose reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.0     4e-07   0.00016       1     112 [.      46     163 ..      46     216 .. 0.87

  Alignments for each domain:
  == domain 1    score: 18.7 bits;  conditional E-value: 4e-07
   TIGR01214   1 rilitGakgqlgreLveqlskegsevvaltrs..........qldledpealeellreikPdvvvntaAytdVDkaEseaekayavNalatenlAraaarvgallvhiSTDYvFDGekkrpY 112
                 ++++ Ga+g +g +L+++ls++g  v+ ++r+          qldl+  e++ + + + k dv v+ a      k+ +  ++a  +N  +t++  +aa ++g   + +       G +  +Y
  MMETSP1137-20121227|8411_1  46 KVVVSGATGWIGGKLARELSEDGLPVTGVSRRetkidgveslQLDLSSTESMYKGFSQNKFDVAVHMAGT--LGKCTL--QQAVDINIAGTRRFVQAALDAGCKKIVVASSVATMGTQAPMY 163
                 799******************9999999988889********************************9974..566665..57899*************999998888766555555555555 PP

>> TIGR03649  ergot_EASG: ergot alkaloid biosynthesis protein, AFUA_2G17970 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0   8.6e-06    0.0035       2     113 ..      47     157 ..      46     162 .. 0.75

  Alignments for each domain:
  == domain 1    score: 14.7 bits;  conditional E-value: 8.6e-06
   TIGR03649   2 iLllgGtGkvasriarllaaasvpllvasrssssaaledekavkFdwldedtyenvfssddemekeelisavylvappvldla....sllikFidvavkkgvkrfvllsasaiekG 113
                 +++ g tG ++ ++ar l+++++p+   sr+   ++ + +++ + d+  +++  + fs+++ +   ++  +  l +  + +++      + +F++ a+  g k++v+ s+  +  G
  MMETSP1137-20121227|8411_1  47 VVVSGATGWIGGKLARELSEDGLPVTGVSRRE--TKIDGVESLQLDLSSTESMYKGFSQNKFDVAVHMAGT--LGKCTLQQAVdiniAGTRRFVQAALDAGCKKIVVASS-VATMG 157
                 78999*********************99*999..8899999****************66555444333333..3333333333000145679*************98764.44455 PP

>> TIGR02622  CDP_4_6_dhtase: CDP-glucose 4,6-dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.6   0.0   0.00011     0.047       5     192 ..      45     217 ..      43     219 .. 0.67
   2 ?    0.7   0.0      0.12        48     277     319 ..     313     352 ..     283     356 .. 0.65

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 0.00011
   TIGR02622   5 kkvlvtGhtGfkGsWlslwLkelGaevaGysldpetkpnlfellklakklkdssvlgdirdaeklekaieevkPeivfhlaaqplvrksYkdPletfetnvlGtvnlleavralesvkavvl..v....tsDkvYenkewvwgyretdalGGhDpYsaskaaaelvvasyrksflkeankekikiasaRaGnvi 192
                 +kv+v G tG+ G+ l+  L+e G  v+G s   etk + +e l+l           d+  +e++ k +++ k ++  h+a  +l +   ++     ++n+ Gt + ++a+     +k+vv+  v    t   +Y  k+   +  + +  G   pY+ sk a+e +++ + k     + +e + + ++R Gnv+
  MMETSP1137-20121227|8411_1  45 QKVVVSGATGWIGGKLARELSEDGLPVTGVSRR-ETKIDGVESLQL-----------DLSSTESMYKGFSQNKFDVAVHMAG-TLGKCTLQQA---VDINIAGTRRFVQAALDAGCKKIVVAssVatmgTQAPMYPPKKLPLA-ADAQFQGAPWPYAYSKDAVEQLIDFMSKE----EGNEDVDFIIVRIGNVV 217
                 79***************************9965.666777776665...........4555678888888888888888875.6777777665...46888888888888777776666653112111123334444444433.45556666777777777777777644432....22556777777777775 PP

  == domain 2    score: 0.7 bits;  conditional E-value: 0.12
   TIGR02622 277 llagkkaeiekksdkeapheaklLkLdsdkakkklgwkprlsl 319
                   a++k+ +++   +++ +e + L  d + akk+lgw+p+ +l
  MMETSP1137-20121227|8411_1 313 DEAASKIDMSH--YSKRGRERDPL-YDLSAAKKELGWEPKVDL 352
                 44444444443..23456666666.47889999*****99875 PP

>> TIGR03589  PseB: UDP-N-acetylglucosamine 4,6-dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   0.0       2.4   9.9e+02       5      23 ..      45      63 ..      44      67 .. 0.78
   2 !    9.7   0.2   0.00019     0.079      95     125 ..     122     152 ..      90     237 .. 0.79

  Alignments for each domain:
  == domain 1    score: -3.8 bits;  conditional E-value: 2.4
   TIGR03589  5 ksilitGgtGsfGkkfikk 23
                + ++++G+tG  G k  ++
  MMETSP1137-20121227|8411_1 45 QKVVVSGATGWIGGKLARE 63
                578999****999887665 PP

  == domain 2    score: 9.7 bits;  conditional E-value: 0.00019
   TIGR03589  95 leciktnieGaenvidaaldkgvkkvvalst 125
                  +++  ni G++  ++aald+g kk+v  s+
  MMETSP1137-20121227|8411_1 122 QQAVDINIAGTRRFVQAALDAGCKKIVVASS 152
                 468999******************9876553 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (365 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       145  (0.0353486); expected 82.0 (0.02)
Passed bias filter:                      135  (0.0329108); expected 82.0 (0.02)
Passed Vit filter:                        24  (0.0058508); expected 4.1 (0.001)
Passed Fwd filter:                        10  (0.00243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.41u 0.19s 00:00:00.60 Elapsed: 00:00:00.48
# Mc/sec: 1003.67
//
Query:       MMETSP1137-20121227|8412_1  [L=628]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.9e-32  110.4   2.6    5.6e-32  108.8   0.9    2.3  2  TIGR02475 CobW: cobalamin biosynthesis protein CobW
    5.3e-06   23.9   1.0    0.00013   19.4   0.0    2.1  2  TIGR00073 hypB: hydrogenase accessory protein HypB
     0.0011   16.1   0.8     0.0078   13.2   0.0    2.1  2  TIGR03819 heli_sec_ATPase: helicase/secretion neighborhood ATPase


Domain annotation for each model (and alignments):
>> TIGR02475  CobW: cobalamin biosynthesis protein CobW
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  108.8   0.9   4.1e-35   5.6e-32       4     243 ..      89     364 ..      86     378 .. 0.78
   2 ?   -2.9   0.0      0.39   5.3e+02     282     318 ..     539     576 ..     537     581 .. 0.69

  Alignments for each domain:
  == domain 1    score: 108.8 bits;  conditional E-value: 4.1e-35
   TIGR02475   4 ipvtvvtGflGaGkttlirhllenaeGkriavivnefGdlGidGeilkacgieacsee............eivelanGcicctvaddflptlekl....lareeeldhilietsGlalpkplvqafq......wpeirsrvtvdgvvavvdsaavaa....Grfaedldal.......eaqraadenldh.espleelfedqlacadlvilnkadlldaaglekvraeiaeelpravkiveaeeGevdaevll....Glgaaaeedlearkshhdlee 243
                 +p t+++GflG+Gktt++ h+l+n +  r+ v+vn+   + id ++++     + + +            ++v+l+nGc cc+  dd++ +l +l    l+r    dhi++e+sG+a p+ l + fq      wp +r  v++  +v+vvdsa+  +      +  d  +l       +a     e+ld  +  + +l+ +q   ad+v+lnkadl++ +++++v++ +   ++   +++ ae  +v+ + ll     lg+a  +++ + ks  d+ +
  MMETSP1137-20121227|8412_1  89 VPLTILSGFLGSGKTTMLTHILNNKDDVRVGVVVNDVAAVNIDAKLVQRGDERGSEADsavgseltawgdDLVQLSNGCACCSAGDDLFASLAELislsLSRGMPYDHIVVESSGVAEPRLLRAMFQeavandWPLMR-VVSLQNMVTVVDSASFLElyesDALVRDRPDLgggapdeSASPFLTEQLDAgDAGVVQLLVEQAEIADVVVLNKADLMSDDEMARVEQIV-GAINGFATVLRAEYSKVPLSQLLvqsrELGVAGSNEVMDHKSAVDFAK 364
                 9**********************************************987555444445556667888889*********************99933334577889**************9977664444444**988.5899*********98754111133444444441211111222333567776258899****************************98755.66888899**********998884444488889999999998888766 PP

  == domain 2    score: -2.9 bits;  conditional E-value: 0.39
   TIGR02475 282 vlrikGfvevegkp.lrllvqavGkrvdsy.ydrawkae 318
                 ++r kGfv +++ p + +     Gkr+d     r w+ +
  MMETSP1137-20121227|8412_1 539 LVRSKGFVWLSDEPeVAFYWSHAGKRLDLSeMGRWWA-S 576
                 6799*******99944566778999999551455554.4 PP

>> TIGR00073  hypB: hydrogenase accessory protein HypB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.0   9.2e-08   0.00013      26      78 ..      84     137 ..      63     147 .. 0.76
   2 ?    2.9   0.1      0.01        14     156     179 ..     291     315 ..     283     332 .. 0.71

  Alignments for each domain:
  == domain 1    score: 19.4 bits;  conditional E-value: 9.2e-08
   TIGR00073  26 ekkgllvlnllss.iGsGktlllekliealkkevkiavieGDlitka.DaeRlrk 78 
                 +k++ + l +ls   GsGkt++l+++++++++ v+++v++ D+++ + Da+ +++
  MMETSP1137-20121227|8412_1  84 NKRQPVPLTILSGfLGSGKTTMLTHILNNKDD-VRVGVVVNDVAAVNiDAKLVQR 137
                 556666777776537************99988.**********986526655444 PP

  == domain 2    score: 2.9 bits;  conditional E-value: 0.01
   TIGR00073 156 keadlilinkvdlveavd.advekv 179
                 + ad++++nk+dl+   + a+ve++
  MMETSP1137-20121227|8412_1 291 EIADVVVLNKADLMSDDEmARVEQI 315
                 579**********874331344444 PP

>> TIGR03819  heli_sec_ATPase: helicase/secretion neighborhood ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   0.0   5.7e-06    0.0078     182     232 ..      93     143 ..      54     155 .. 0.88
   2 ?    0.9   0.1     0.033        44      49      78 ..     277     306 ..     263     320 .. 0.83

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 5.7e-06
   TIGR03819 182 lvsGgtGsGkttLLsalLalvaedeRivlvedaaelrpdhphvvkleaRea 232
                 ++sG  GsGktt+L+ +L + ++    v+v+d+a +++d + v +  +R +
  MMETSP1137-20121227|8412_1  93 ILSGFLGSGKTTMLTHILNNKDDVRVGVVVNDVAAVNIDAKLVQRGDERGS 143
                 67999*************998888888*********999887776666665 PP

  == domain 2    score: 0.9 bits;  conditional E-value: 0.033
   TIGR03819  49 lsgaGpLeplladpgvtDvlvngpdevwvD 78 
                    aG+++ l+++ +++Dv+v ++ ++  D
  MMETSP1137-20121227|8412_1 277 AGDAGVVQLLVEQAEIADVVVLNKADLMSD 306
                 45699***************9887766655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (628 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       174  (0.0424183); expected 82.0 (0.02)
Passed bias filter:                      141  (0.0343735); expected 82.0 (0.02)
Passed Vit filter:                        30  (0.00731351); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.53u 0.19s 00:00:00.72 Elapsed: 00:00:00.69
# Mc/sec: 1201.29
//
Query:       MMETSP1137-20121227|8414_1  [L=88]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.097   10.2   3.3       0.31    8.6   0.4    2.2  2  TIGR01053 LSD1: zinc finger domain, LSD1 subclass


Domain annotation for each model (and alignments):
>> TIGR01053  LSD1: zinc finger domain, LSD1 subclass
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.1    0.0083        34      20      30 ..      39      49 ..      37      50 .. 0.70
   2 ?    8.6   0.4   7.5e-05      0.31       2      18 ..      58      74 ..      57      75 .. 0.87

  Alignments for each domain:
  == domain 1    score: 2.1 bits;  conditional E-value: 0.0083
   TIGR01053 20 vRCalCqtvnl 30
                v+C  C  ++ 
  MMETSP1137-20121227|8414_1 39 VKCPGCFSITT 49
                78888877775 PP

  == domain 2    score: 8.6 bits;  conditional E-value: 7.5e-05
   TIGR01053  2 vvCsgCRtlLmyprGAs 18
                v C++C t L  p G +
  MMETSP1137-20121227|8414_1 58 VLCGSCATVLCQPTGGK 74
                78********9999865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (88 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        87  (0.0212092); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.13u 0.14s 00:00:00.27 Elapsed: 00:00:01.19
# Mc/sec: 97.61
//
Query:       MMETSP1137-20121227|8415_1  [L=243]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (243 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       171  (0.041687); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.15s 00:00:00.37 Elapsed: 00:00:00.40
# Mc/sec: 801.83
//
Query:       MMETSP1137-20121227|8416_1  [L=98]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (98 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        53  (0.0129205); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.15s 00:00:00.29 Elapsed: 00:00:00.43
# Mc/sec: 300.81
//
Query:       MMETSP1137-20121227|8417_1  [L=516]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.4e-13   46.9   0.1    9.1e-13   46.1   0.1    1.3  1  TIGR02349 DnaJ_bact: chaperone protein DnaJ
    1.7e-08   31.1   0.1    2.2e-08   30.8   0.1    1.1  1  TIGR03835 termin_org_DnaJ: terminal organelle assembly protein TopJ


Domain annotation for each model (and alignments):
>> TIGR02349  DnaJ_bact: chaperone protein DnaJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.1   0.1   4.4e-16   9.1e-13      11      68 ..       2      55 ..       1      74 [. 0.92

  Alignments for each domain:
  == domain 1    score: 46.1 bits;  conditional E-value: 4.4e-16
   TIGR02349 11 dAseeeikkAYrklakkyHPDrnkgekeaeekfkeineAyevLsdeekraqYDqfgha 68
                dAseeei++AYrkla  +HPDrn       e f + + Ay+vL d ++r++YD f ++
  MMETSP1137-20121227|8417_1  2 DASEEEIRRAYRKLALVHHPDRNG----GXEFFLQLKTAYDVLIDVDRRRNYDAFHQS 55
                79*********************9....5689**********************9765 PP

>> TIGR03835  termin_org_DnaJ: terminal organelle assembly protein TopJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.8   0.1   1.1e-11   2.2e-08      12      66 ..       1      52 [.       1      55 [. 0.94

  Alignments for each domain:
  == domain 1    score: 30.8 bits;  conditional E-value: 1.1e-11
   TIGR03835 12 rDadeqeikkafrkLakkyhPDrnkaadaakifaeineandvLsnPkkraryDky 66
                +Da e+ei++a+rkLa  +hPDrn      + f  +  a+dvL + ++r +yD +
  MMETSP1137-20121227|8417_1  1 PDASEEEIRRAYRKLALVHHPDRNGG---XEFFLQLKTAYDVLIDVDRRRNYDAF 52
                69**********************75...679*********************76 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (516 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       132  (0.0321794); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.35u 0.19s 00:00:00.54 Elapsed: 00:00:00.37
# Mc/sec: 1840.71
//
Query:       MMETSP1137-20121227|8418_1  [L=413]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (413 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        67  (0.0163335); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.12s 00:00:00.41 Elapsed: 00:00:00.38
# Mc/sec: 1434.51
//
Query:       MMETSP1137-20121227|8419_1  [L=294]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (294 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        79  (0.0192589); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.14s 00:00:00.37 Elapsed: 00:00:00.38
# Mc/sec: 1021.18
//
Query:       MMETSP1137-20121227|8420_1  [L=164]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (164 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       175  (0.0426621); expected 82.0 (0.02)
Passed bias filter:                      133  (0.0324232); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.15s 00:00:00.32 Elapsed: 00:00:00.32
# Mc/sec: 676.44
//
Query:       MMETSP1137-20121227|8421_1  [L=348]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (348 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        62  (0.0151146); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.12s 00:00:00.37 Elapsed: 00:00:00.37
# Mc/sec: 1241.41
//
Query:       MMETSP1137-20121227|8422_1  [L=1285]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      8e-16   56.0   0.0    2.9e-10   37.8   0.0    3.2  3  TIGR02152 D_ribokin_bact: ribokinase
  ------ inclusion threshold ------
      0.014   12.3   1.0       0.02   11.8   0.0    1.7  2  TIGR02198 rfaE_dom_I: bifunctional protein RfaE, domain I


Domain annotation for each model (and alignments):
>> TIGR02152  D_ribokin_bact: ribokinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.8   0.0   1.4e-13   2.9e-10       2     102 ..     178     287 ..     177     314 .. 0.77
   2 !    2.3   0.0    0.0091        19     128     164 ..     412     448 ..     402     483 .. 0.82
   3 !   11.9   0.0   1.1e-05     0.022     235     296 ..     590     651 ..     569     653 .. 0.87

  Alignments for each domain:
  == domain 1    score: 37.8 bits;  conditional E-value: 1.4e-13
   TIGR02152   2 vvvGSinvDlvlrvkrlpkpGetvkae...efkiaaGGKGANQAvaaarlgaevsmigkvGkDefgeellenlkkeg.....idteyvkkv.kktstGvAlilvdeegeN 102
                 +v+GSi +Dl + v+ l ++ + ++ +    f+  +GGK AN Av   +lg +++++++vG D++g +ll++l+k +     +d++ v++  ++++tGv + ++++ +e 
  MMETSP1137-20121227|8422_1 178 LVFGSITMDLHAVVDGLVRKSDLLRLSalgRFTASPGGKAANEAVGLCKLGVRTHLVARVGFDAMGVSLLKELSKVQaqhpsLDISGVTTAeSDVATGVSVQILAHAAEE 287
                 69********************9987745578999************************************998765111225666666541466777776666655554 PP

  == domain 2    score: 2.3 bits;  conditional E-value: 0.0091
   TIGR02152 128 esdlvllQlEipletveealkiakkagvkvllnPAPa 164
                 e  ++llQlE+++e ++  + +a+++g+ v l   P 
  MMETSP1137-20121227|8422_1 412 EVGVLLLQLEVSTEPMRVLAAAAREQGKLVALKASPL 448
                 56789*************************9998886 PP

  == domain 3    score: 11.9 bits;  conditional E-value: 1.1e-05
   TIGR02152 235 ipalkvkavDttaAGDtFigalavaLaegksledavrfanaaaalsVtrkGaqssiPtkeev 296
                 +p ++ k vD  +  D+F+ +++     g sl++a+  +   + ls    Gaq+++P+++e+
  MMETSP1137-20121227|8422_1 590 LPCTRRKLVDSLGFKDAFVSGFVGGHCIGLSLREALLWGYGSSVLSLSAPGAQAGLPSRDEL 651
                 57888899****************************************************97 PP

>> TIGR02198  rfaE_dom_I: bifunctional protein RfaE, domain I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   9.9e-06      0.02      46      91 ..     212     258 ..     177     305 .. 0.80
   2 ?   -3.9   0.1      0.61   1.3e+03     260     286 ..     354     378 ..     350     383 .. 0.68

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 9.9e-06
   TIGR02198  46 rlGG.AaNvakNlasLgaevvlvgvvGkDeagkaleellkeegiets 91 
                  +GG AaN a  l +Lg+++ lv+ vG D  g +l + l++ ++++ 
  MMETSP1137-20121227|8422_1 212 SPGGkAANEAVGLCKLGVRTHLVARVGFDAMGVSLLKELSKVQAQHP 258
                 455449*****************************999998887732 PP

  == domain 2    score: -3.9 bits;  conditional E-value: 0.61
   TIGR02198 260 DVtGAGDtViavlalalaagasleeaa 286
                 DV+  GD V  +l+l    g+  +ea 
  MMETSP1137-20121227|8422_1 354 DVSVCGDEVAYALSL--LRGEAAKEAS 378
                 9999****9766655..5555555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1285 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       111  (0.02706); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.73u 0.15s 00:00:00.88 Elapsed: 00:00:00.56
# Mc/sec: 3028.68
//
Query:       MMETSP1137-20121227|8423_1  [L=178]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.5e-33  113.2   0.1    2.2e-33  112.7   0.1    1.3  1  TIGR00037 eIF_5A: translation initiation factor eIF-5A
    1.8e-06   25.6   0.0    2.3e-06   25.2   0.0    1.2  1  TIGR00038 efp: translation elongation factor P
     0.0079   14.2   0.0     0.0097   13.9   0.0    1.2  1  TIGR02178 yeiP: elongation factor P-like protein YeiP


Domain annotation for each model (and alignments):
>> TIGR00037  eIF_5A: translation initiation factor eIF-5A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  112.7   0.1   1.6e-36   2.2e-33       6     114 ..      33     142 ..      28     174 .. 0.84

  Alignments for each domain:
  == domain 1    score: 112.7 bits;  conditional E-value: 1.6e-36
   TIGR00037   6 qvevkaLrkggyvvidgepckivdisvskpGkhGaakarvvaigifdkkkrefvsPvtskvevPivdrkeaqvlaid.ggvvqlmdleteetlevkiPeelkdsleegve 114
                 ++e  ++rkgg ++i+g+pck+ d++ sk+GkhG+ak + vai+if++kk e++ P+++  + P+v++ e+q +++d +g+v++md e++++ ++k+P+ ++ +   + e
  MMETSP1137-20121227|8423_1  33 PIEAGQIRKGGLIMIKGRPCKVSDVTSSKTGKHGHAKCHFVAIDIFTGKKMEDLVPASHTTYSPFVKKIEYQCMDVDeDGFVSVMDAEGNTREDLKLPDTISPEPPGAAE 142
                 78999***********************************************************************84689*****************987766555555 PP

>> TIGR00038  efp: translation elongation factor P
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.2   0.0   1.7e-09   2.3e-06       2      85 ..      35     120 ..      34     132 .. 0.90

  Alignments for each domain:
  == domain 1    score: 25.2 bits;  conditional E-value: 1.7e-09
   TIGR00038   2 sandlrkGlvieldgelyvvlefehvkpGk.gqafvrvklknlktgkvlektfksgekvekaeveekemqylYkdgdsyv.fmdke 85 
                 +a ++rkG  i+++g++++v +++ +k+Gk g+a  ++   ++ tgk++e  + ++++  +  v++ e+q +  d+d +v +md e
  MMETSP1137-20121227|8423_1  35 EAGQIRKGGLIMIKGRPCKVSDVTSSKTGKhGHAKCHFVAIDIFTGKKMEDLVPASHTTYSPFVKKIEYQCMDVDEDGFVsVMDAE 120
                 6889*************************7468999999********************************999999876478876 PP

>> TIGR02178  yeiP: elongation factor P-like protein YeiP
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.0   7.1e-06    0.0097       2      90 ..      36     124 ..      35     149 .. 0.83

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 7.1e-06
   TIGR02178   2 aselkkGlvveyngktllikdievssPqgrGgaklyklrlsdvrtGakveerfkaddvldtvellrrevsfsyvdGeeyv.fldeedytl 90 
                 a +++kG ++  +g+  ++ d+  ss +g+ g  + +++  d+ tG k+e+   a +   +  +++ e +   vd + +v  +d e  t 
  MMETSP1137-20121227|8423_1  36 AGQIRKGGLIMIKGRPCKVSDVT-SSKTGKHGHAKCHFVAIDIFTGKKMEDLVPASHTTYSPFVKKIEYQCMDVDEDGFVsVMDAEGNTR 124
                 7789*****************97.5677788888889**************999998877777777777777778888874577776665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (178 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        98  (0.0238908); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.19u 0.15s 00:00:00.34 Elapsed: 00:00:00.25
# Mc/sec: 939.76
//
Query:       MMETSP1137-20121227|8427_1  [L=393]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (393 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       150  (0.0365675); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.11s 00:00:00.40 Elapsed: 00:00:00.37
# Mc/sec: 1401.94
//
Query:       MMETSP1137-20121227|8428_1  [L=135]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (135 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        43  (0.0104827); expected 82.0 (0.02)
Passed bias filter:                       37  (0.00901999); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.11s 00:00:00.27 Elapsed: 00:00:00.32
# Mc/sec: 556.83
//
Query:       MMETSP1137-20121227|8429_1  [L=407]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (407 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       131  (0.0319356); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.17s 00:00:00.46 Elapsed: 00:00:00.80
# Mc/sec: 671.49
//
Query:       MMETSP1137-20121227|8430_1  [L=581]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (581 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        77  (0.0187713); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.17s 00:00:00.54 Elapsed: 00:00:00.51
# Mc/sec: 1503.64
//
Query:       MMETSP1137-20121227|8431_1  [L=168]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (168 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       101  (0.0246221); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.13s 00:00:00.30 Elapsed: 00:00:00.32
# Mc/sec: 692.94
//
Query:       MMETSP1137-20121227|8432_1  [L=97]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (97 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        43  (0.0104827); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.17s 00:00:00.32 Elapsed: 00:00:00.33
# Mc/sec: 387.97
//
Query:       MMETSP1137-20121227|8433_1  [L=246]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (246 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        89  (0.0216967); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.12s 00:00:00.32 Elapsed: 00:00:00.37
# Mc/sec: 877.55
//
Query:       MMETSP1137-20121227|8434_1  [L=714]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      2e-20   71.3   0.2    3.2e-20   70.7   0.1    1.2  1  TIGR02349 DnaJ_bact: chaperone protein DnaJ
    1.7e-17   60.9   0.3    2.3e-17   60.5   0.2    1.1  1  TIGR03835 termin_org_DnaJ: terminal organelle assembly protein TopJ
     0.0077   14.2   0.2      0.022   12.7   0.1    1.7  1  TIGR00714 hscB: Fe-S protein assembly co-chaperone HscB


Domain annotation for each model (and alignments):
>> TIGR02349  DnaJ_bact: chaperone protein DnaJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.7   0.1   2.3e-23   3.2e-20       2      68 ..     104     169 ..     103     181 .. 0.93

  Alignments for each domain:
  == domain 1    score: 70.7 bits;  conditional E-value: 2.3e-23
   TIGR02349   2 YYeiLgvskdAseeeikkAYrklakkyHPDrnkgekeaeekfkeineAyevLsdeekraqYDqfgha 68 
                  Ye+L +  +Ase+ei++AYrk+a  yHPD+n+ ++ea+++f +i++Ay +Lsd + ra+Y+++g+ 
  MMETSP1137-20121227|8434_1 104 PYETLQLASQASEAEIRSAYRKMAAMYHPDKNP-DPEASARFIQISRAYTILSDARARANYEKYGSP 169
                 5********************************.******************************975 PP

>> TIGR03835  termin_org_DnaJ: terminal organelle assembly protein TopJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.5   0.2   1.7e-20   2.3e-17       3      68 ..     103     168 ..     102     178 .. 0.95

  Alignments for each domain:
  == domain 1    score: 60.5 bits;  conditional E-value: 1.7e-20
   TIGR03835   3 DyyevLgidrDadeqeikkafrkLakkyhPDrnkaadaakifaeineandvLsnPkkraryDkyGh 68 
                 D ye L++   a e ei+ a+rk+a  yhPD+n +++a   f  i  a+ +Ls+ + ra+y+kyG 
  MMETSP1137-20121227|8434_1 103 DPYETLQLASQASEAEIRSAYRKMAAMYHPDKNPDPEASARFIQISRAYTILSDARARANYEKYGS 168
                 77***************************************************************5 PP

>> TIGR00714  hscB: Fe-S protein assembly co-chaperone HscB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.7   0.1   1.6e-05     0.022       6      56 ..     117     163 ..     113     164 .. 0.84

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 1.6e-05
   TIGR00714   6 kaLrkryrklQkqyHPDvsksaqeqaaalqqStelNqAykTLkdplkRaey 56 
                   +r  yrk+ + yHPD  k+      a+ +  ++  Ay  L d+  Ra+y
  MMETSP1137-20121227|8434_1 117 AEIRSAYRKMAAMYHPD--KNPD--PEASARFIQISRAYTILSDARARANY 163
                 568899***********..3333..468899999***************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (714 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       120  (0.029254); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.49u 0.12s 00:00:00.61 Elapsed: 00:00:00.59
# Mc/sec: 1597.29
//
Query:       MMETSP1137-20121227|8435_1  [L=344]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.9e-10   37.8   0.6    2.8e-10   37.2   0.4    1.1  1  TIGR00717 rpsA: ribosomal protein S1
      7e-08   29.2   0.4    1.1e-07   28.5   0.3    1.3  1  TIGR03591 polynuc_phos: polyribonucleotide nucleotidyltransferase


Domain annotation for each model (and alignments):
>> TIGR00717  rpsA: ribosomal protein S1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.2   0.4   1.4e-13   2.8e-10     267     372 ..      38     145 ..      34     153 .. 0.80

  Alignments for each domain:
  == domain 1    score: 37.2 bits;  conditional E-value: 1.4e-13
   TIGR00717 267 ekkfkv.gkkikgkvtnladyGvfveiee..giEGlvhvsElsWekknskPskvvkvGdevevkvleideerrrvslslKqvkanPweefeekhpvGdkvkgkikkitd 372
                 e++f++ ++++ ++v  +a+ G++v + e  +iEG++  sEls  + +   +k+v+vG +  ++vl +d+e++ + ls ++v ++  ++  e+++  + v++ ++++ +
  MMETSP1137-20121227|8435_1  38 ENQFPEiDEVVVVQVRSIAEMGAYVSLLEynNIEGMILLSELSRRR-IRSINKLVRVGKQEVCMVLRVDKEKGYIDLSKRRVSPEDVQKCDERYQRSKAVHSIVRHVSE 145
                 6677762456778899999999999997433899999999999655.55589999999999999999999999999999999999999999999999999988888766 PP

>> TIGR03591  polynuc_phos: polyribonucleotide nucleotidyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.5   0.3   5.6e-11   1.1e-07     616     688 ..      42     117 ..      35     118 .. 0.91

  Alignments for each domain:
  == domain 1    score: 28.5 bits;  conditional E-value: 5.6e-11
   TIGR03591 616 vevgkvyegkvvkiadfgafvellp..gkdglvhiSelaeervekvedvlkegdevkvkvleidk.kgrvklsrka 688
                 +e+++v   +v +ia++ga+v+ll+  + +g++ +Sel+++r++++++ +++g++    vl +dk kg ++ls+++
  MMETSP1137-20121227|8435_1  42 PEIDEVVVVQVRSIAEMGAYVSLLEynNIEGMILLSELSRRRIRSINKLVRVGKQEVCMVLRVDKeKGYIDLSKRR 117
                 7999*******************9632779**********************************87899**99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (344 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       150  (0.0365675); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.28u 0.15s 00:00:00.43 Elapsed: 00:00:00.68
# Mc/sec: 667.71
//
Query:       MMETSP1137-20121227|8436_1  [L=544]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.6e-50  169.4   0.0    4.1e-48  162.1   0.1    2.1  2  TIGR01357 aroB: 3-dehydroquinate synthase


Domain annotation for each model (and alignments):
>> TIGR01357  aroB: 3-dehydroquinate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.1   0.0   0.00058       2.4       3      77 ..      62     137 ..      60     141 .. 0.87
   2 !  162.1   0.1     1e-51   4.1e-48      68     333 ..     190     462 ..     166     468 .. 0.89

  Alignments for each domain:
  == domain 1    score: 5.1 bits;  conditional E-value: 0.00058
   TIGR01357   3 vkvgegllkklveelae.kasklvvitdeeveklvaekleealkslgvevlvlvvpdgeesKsletvaklldqlle 77 
                 v +g++ l +lv el++   +k+++  de++  ++a +le+ l+++g+  + +v+   e++K+++++ ++l++ l+
  MMETSP1137-20121227|8436_1  62 VLLGHDKLPELVGELKTlDMDKVFLGYDENTVVHCAPRLEAELERQGIPFYRCVMGVSEQNKTMASLDHILETFLK 137
                 666777777888888885449999999****************************************999998776 PP

  == domain 2    score: 162.1 bits;  conditional E-value: 1e-51
   TIGR01357  68 vaklldqlleekler.ksvlvaiGGGvvgDlaGFvAatylRGirlvqvPTtllamvDssvG.GKtginlplgkNliGafyqPkaVlidlkvletlperelreGmaEviKhgliadaelfeelekneklllklaelealeelikrsievKaevVeeDekesglRalLNfGHtlgHaiEallkyklsHGeaVaiGmvveaklseklgllkaellerlvallkklglptklkkklsveellkallkDKK.....negskiklvlleeiGkaalase 333
                 +  + ++l+   ++  k+v++ +GGG+v    G +A    RGirlvq PT++l + D++    K +in+ + kN++G ++ P++ lid+++ etl   el++G++E+ K +++ + + +e ++k++ +     + + l e+   ++  K  + + D+ke+ l  l  +GHt+gHa+E + + + sHGe V+iGm  + ++s+k+g+++  ++e + al+ +l ++++++k+  +ee+l+++++D K     ++++   ++l ++iG++   ++
  MMETSP1137-20121227|8436_1 190 AIMCRRALVYDSADXmKTVVMPVGGGIVANTYGLAAGLLFRGIRLVQCPTSFLNAHDAAASsQKQAINHTGYKNIVGLYHVPTMALIDTSFYETLGVTELKAGLGELTKNAALFGGQHYELIKKTTMTKGVALSGDDLVEATYIGLGAKDMLLAIDPKEKHLALLFEYGHTVGHALELTQGVRTSHGEGVTIGMLAASYISNKMGIMSDADREAHDALVLALDPQIEIPKRDITEEVLDKVMHDNKrgylpEREGFCPFILNQRIGEMHAPNK 462
                 5555666666666551566778***********************************9986269**********************************************************998876555578899*********************************************************************************************99999*********99444444788899999999999887665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (544 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.15s 00:00:00.52 Elapsed: 00:00:00.91
# Mc/sec: 789.03
//
Query:       MMETSP1137-20121227|8437_1  [L=308]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (308 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        78  (0.0190151); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.13s 00:00:00.38 Elapsed: 00:00:00.39
# Mc/sec: 1042.38
//
Query:       MMETSP1137-20121227|8438_1  [L=192]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (192 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       170  (0.0414432); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         8  (0.00195027); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.18s 00:00:00.51 Elapsed: 00:00:00.64
# Mc/sec: 395.97
//
Query:       MMETSP1137-20121227|8440_1  [L=73]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (73 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        28  (0.00682594); expected 82.0 (0.02)
Passed bias filter:                       28  (0.00682594); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.32
# Mc/sec: 301.10
//
Query:       MMETSP1137-20121227|8441_1  [L=98]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (98 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       116  (0.0282789); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                        23  (0.00560702); expected 4.1 (0.001)
Passed Fwd filter:                        14  (0.00341297); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.17s 00:00:00.49 Elapsed: 00:00:00.66
# Mc/sec: 195.98
//
Query:       MMETSP1137-20121227|8442_1  [L=450]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   2.6e-203  673.3   0.0     3e-203  673.2   0.0    1.0  1  TIGR01793 cit_synth_euk: citrate (Si)-synthase, eukaryotic
    1.8e-41  139.9   0.0    2.6e-41  139.4   0.0    1.1  1  TIGR01800 cit_synth_II: 2-methylcitrate synthase/citrate synthase II
    5.4e-30  102.2   0.0    7.7e-30  101.7   0.0    1.2  1  TIGR01798 cit_synth_I: citrate (Si)-synthase


Domain annotation for each model (and alignments):
>> TIGR01793  cit_synth_euk: citrate (Si)-synthase, eukaryotic
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  673.2   0.0  2.2e-206    3e-203       3     427 .]      10     439 ..       8     439 .. 0.98

  Alignments for each domain:
  == domain 1    score: 673.2 bits;  conditional E-value: 2.2e-206
   TIGR01793   3 dlkevlkekipeeqekvkklrkehgkkvvgnvtvdmvyggmrgvkglvwetsvldpeegirfrglsipecqkllpk..akggeeplpegllwllltgevpseeqvaalsaelaaradlpkfvvklidalpstlhpmaqfaaavaaleveskfakayakgiakkkyweytyedsldliaklptvaakiyrnlykdgkaasidkkkdysanlasmlgyddkslaelmrlyltihsdheggnvsahtshlvgsalsdpylslaaalnglagplhglanqevlvfl...kevvkevgenlteeqlkdyvwktlnsgkvvpgyghavlrktdpryesqrefalkklpddplfklvsqlykivpgiltekgkvknpypnvdahsgvllqyyglteasyytvlfgvsralgvlsqliidralglplerpksvsteal 427
                  lke l   +pe+q+ +k ++kehg k+v++vt+d+++gg+r++k+++wets+ldp egirfrg++ipe q  lp+   k+g+ep pegl+wllltg++p+++qv+al++el+ara+lp +v+ +i ++p+ +hpm+q++ a+ al+++s fa+ yakg +k+ ywe+tyed ++l+a+lp v a iyr  y dgk  + dk+ dysan+++m+g+ d+s+ elmrly+tihsdheggn saht+hlvgs+lsdpylsl+a++n lagplhglanqevl +l   + + ke g+ +t e++ ++ w+tl++gkv+pgyghavlrktdpry++qr falk+lpd +lfk+v ++y+++pg+lte+gk+knpypnvd+hsgvll+yyg+   +yytvlfgv ra gvl+ql +dralglplerpksv+ e+l
  MMETSP1137-20121227|8442_1  10 GLKERLMTIMPEKQDALKAMKKEHGAKIVDKVTIDQLVGGARSIKCMLWETSLLDPIEGIRFRGYTIPELQEKLPNytGKAGDEPQPEGLFWLLLTGDIPTKAQVDALTQELHARAKLPAHVEPMIRSFPKGMHPMTQLSSAILALQTDSVFAREYAKGCHKSTYWEHTYEDMMNLLARLPEVCALIYRCTYFDGKIGAYDKSVDYSANFCNMMGHTDPSFHELMRLYITIHSDHEGGNASAHTCHLVGSTLSDPYLSLSASMNALAGPLHGLANQEVLGWLlglQALLKEQGKPVTPESITEFAWDTLKAGKVIPGYGHAVLRKTDPRYTCQRTFALKHLPDYELFKVVNTVYEVMPGVLTEHGKTKNPYPNVDSHSGVLLKYYGFDHYDYYTVLFGVGRAYGVLAQLFWDRALGLPLERPKSVTSEWL 439
                 69*************************************************************************733688********************************************************************************************************************************************************************************************************733367889*****************************************************************************************************************************************996 PP

>> TIGR01800  cit_synth_II: 2-methylcitrate synthase/citrate synthase II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  139.4   0.0   1.9e-44   2.6e-41      38     338 ..      95     418 ..      60     433 .. 0.78

  Alignments for each domain:
  == domain 1    score: 139.4 bits;  conditional E-value: 1.9e-44
   TIGR01800  38 sfEEvaylllygkLPtkeeLekfktelakerelpdevielleslpkeahpmavlrtavsalga...ldke.....kekvtkeeareiakrllaklptivaavyriregeeivap.kedlsiaanFLymltGeepskeeekaldiaLiLyaeHe.lnAstfaarviastlsDiysaivaaigaLkGplHGGAneavl.......kmleeiedp...eeaeeyikkklenkekimGfGHrvYktaDpRakilkela.kklsakkgesklyeiaerlekvvee...ekgllpnvDfysasvyaslgipv.elftpiFalsRvsGWtahi 338
                 + E + +lll g++Ptk++++++ +el+++++lp++v  +++s+pk +hpm+ l +a+ al +   +  e     ++++  e+++e   +lla+lp + a +yr    +  + + +++  ++anF +m+   +p  + ++ +   ++++++He  nAs  +   ++stlsD y ++ a++ aL GplHG An++vl       + l+e ++p   e+  e+  ++l++++ i G+GH+v +++DpR ++ +++a k+l + +  + +  ++e +  v++e   +k+ +pnvD +s++  +  g+++ +++t +F ++R  G  a++
  MMETSP1137-20121227|8442_1  95 QPEGLFWLLLTGDIPTKAQVDALTQELHARAKLPAHVEPMIRSFPKGMHPMTQLSSAILALQTdsvFAREyakgcHKSTYWEHTYEDMMNLLARLPEVCALIYRCTYFDGKIGAyDKSVDYSANFCNMMGHTDP--SFHELMRLYITIHSDHEgGNASAHTCHLVGSTLSDPYLSLSASMNALAGPLHGLANQEVLgwllglqALLKEQGKPvtpESITEFAWDTLKAGKVIPGYGHAVLRKTDPRYTCQRTFAlKHLPDYELFKVVNTVYEVMPGVLTEhgkTKNPYPNVDSHSGVLLKYYGFDHyDYYTVLFGVGRAYGVLAQL 418
                 457899****************************************************998652222222211212334468999999****************9987666655156699********966555..57889999********946****************************************843333333566776652226666778899************************9998746776666444444444444444444666999******************9746***********9999876 PP

>> TIGR01798  cit_synth_I: citrate (Si)-synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  101.7   0.0   5.7e-33   7.7e-30      75     385 ..      99     417 ..      47     434 .. 0.77

  Alignments for each domain:
  == domain 1    score: 101.7 bits;  conditional E-value: 5.7e-33
   TIGR01798  75 vcylllkgelptkeqkeefdekvkehtmvheqltrffkgfrrdahpmavlvgvvgal...safyhdal.diedp...kereiaairliaklptlaalsykysi..gqpfvypkndlsyaenflkmlfatpceeykvnpvlaraldrifilhadhe.qnaststvrlagssganpfaciaagiaalwgpahgganeavl.......kmleeigsv...ekiaefikkvkdkndevrlmgfghrvyknydprakvlketceevlkelgkeddpllklalelekia..ledeyfiekklypnvdfysgivlkalgipt.emftvifalartvgwisq 385
                 + +lll g++ptk+q + + +++++ + +   ++ ++++f +  hpm+ l + + al   s f ++ +   +++   ++    ++ l+a+lp ++al y+ ++  g+   y  ++++y+ nf +m+  t       +p + + +   +++h+dhe  nas+ t  l gs+ ++p+ +++a + al gp hg an+ vl       ++l+e g+    e i+ef   + +      + g+gh v +  dpr +     c+  +      d  l+k+   + ++   +  e+   k  ypnvd +sg++lk  g+   + +tv+f + r+ g ++q
  MMETSP1137-20121227|8442_1  99 LFWLLLTGDIPTKAQVDALTQELHARAKLPAHVEPMIRSFPKGMHPMTQLSSAILALqtdSVFAREYAkGCHKStywEHTYEDMMNLLARLPEVCALIYRCTYfdGKIGAYD-KSVDYSANFCNMMGHT-------DPSFHELMRLYITIHSDHEgGNASAHTCHLVGSTLSDPYLSLSASMNALAGPLHGLANQEVLgwllglqALLKEQGKPvtpESITEFAWDTLK--AGKVIPGYGHAVLRKTDPRYT-----CQRTFALKHLPDYELFKVVNTVYEVMpgVLTEHGKTKNPYPNVDSHSGVLLKYYGFDHyDYYTVLFGVGRAYGVLAQ 417
                 5689*************************************************999944445654433123333111556667899*************9665226666665.589*********9765.......8999999999999******55**************************************9983333333355666653122456666544332..234577************975.....5555544455578899998888777423667888999*******************853899***********9997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (450 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        69  (0.0168211); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.35u 0.15s 00:00:00.50 Elapsed: 00:00:00.36
# Mc/sec: 1649.86
//
Query:       MMETSP1137-20121227|8443_1  [L=305]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      5e-19   65.5   0.0    6.1e-19   65.2   0.0    1.0  1  TIGR03903 TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
    1.8e-06   25.4   0.0    2.6e-06   24.9   0.0    1.2  1  TIGR03724 arch_bud32: Kae1-associated kinase Bud32


Domain annotation for each model (and alignments):
>> TIGR03903  TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.2   0.0     3e-22   6.1e-19       3     197 ..      27     209 ..      25     231 .. 0.79

  Alignments for each domain:
  == domain 1    score: 65.2 bits;  conditional E-value: 3e-22
   TIGR03903   3 ghkvaikllRedaaeeerlvaRFrReialCarLshPnivaLlDsGeaedgllFavFeyveGrtlrevLaadGaLpaaetgrLmlqvLDalaaahdaGvvhRDLkPqnimvsaadveshakvLDFGig.aLlpgvedadeatltrttevlGsPaYaaPeqLRgepv.taksDlYaWGLivleCLtGkrvvqGasvaev 197
                 g+ va+k +R + ae+e       Rei++ ++L+hPniv+L D  ++e   l  vFey + + l++ L ++  L ++     + q L ++   h++ v+hRDLkPqn+++ ++++    k+ DFG++ a +  v+         t+ev+ +  Y aP+ L g     +  Dl++ G i+ e    ++   G s  + 
  MMETSP1137-20121227|8443_1  27 GELVALKKIRLE-AEDEGIPSTAIREISILKELQHPNIVRLHDVIHTEK-KLTLVFEYLD-QDLKKFLDTQDRLESGMIKSSLYQLLRGVEFCHERRVLHRDLKPQNLLINKEGE---LKLADFGLArAFGIPVRS-------YTHEVV-TLWYRAPDVLMGSRKySTPVDLWSVGCIFGEMASSRPLFPGTSDHDQ 209
                 56799*****98.89999999999***********************99.8889****98.78***********************************************98886...5777***97344444444.......556665.56777777777764314456788888887777777777777776554 PP

>> TIGR03724  arch_bud32: Kae1-associated kinase Bud32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.9   0.0   1.3e-09   2.6e-06      66     137 ..      70     148 ..      33     163 .. 0.79

  Alignments for each domain:
  == domain 1    score: 24.9 bits;  conditional E-value: 1.3e-09
   TIGR03724  66 dvdpeekkivmeyiegkklkdlleekel.......ellkevGelvgklHkagivhgDlttsNiiv.kddklyliDfGLgk 137
                   ++++ ++v+ey++ ++lk+ l+++         + l+++ + v  +H+ +++h Dl ++N+++ k+++l l DfGL++
  MMETSP1137-20121227|8443_1  70 IHTEKKLTLVFEYLD-QDLKKFLDTQDRlesgmikSSLYQLLRGVEFCHERRVLHRDLKPQNLLInKEGELKLADFGLAR 148
                 34566789999**96.678888888666788888888999999********************99558899*******97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (305 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        86  (0.0209654); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.26u 0.16s 00:00:00.42 Elapsed: 00:00:00.37
# Mc/sec: 1088.02
//
Query:       MMETSP1137-20121227|8444_1  [L=469]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.028   11.2   0.0      0.039   10.8   0.0    1.2  1  TIGR04095 dnd_restrict_1: DNA phosphorothioation system restriction enzyme


Domain annotation for each model (and alignments):
>> TIGR04095  dnd_restrict_1: DNA phosphorothioation system restriction enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   9.4e-06     0.039       7     144 ..     114     252 ..     107     284 .. 0.67

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 9.4e-06
   TIGR04095   7 lelrdyqkeaikaWfk.....nngrGilkmatGtGktltaLalvskl.aekikslvvvvvvPykhLveqWakeaekFgle.pilayesvsrWqkelsekleelsskakkllliittnatlkeekFqsqlrllkkkllliaDeahn 144
                  ++++yq ++++ W++       g Gil+   G Gktl a+al+++l a ++     +vv+P    ++ W+ ++ +F  +  +l + ++++  +e+ + l+ l  ++   +++++  +++  +   + lr++      + Deah 
  MMETSP1137-20121227|8444_1 114 CKMHNYQLDGLR-WAAgllqhGTGGGILADEMGLGKTLQAIALMAHLdAATSAGCRHLVVAPLST-ISGWTDQLSRFYPSlTVLRHTGTAASRAEARAGLAXLGXGQ--SCALLASYESVLADG--DSLRKCGGWSCAVIDEAHR 252
                 567888888876.5432221156889*********************656667788999999876.67899999988543134455555555666666666544443..334444444443332..4555555555556666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (469 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        99  (0.0241346); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.17s 00:00:00.51 Elapsed: 00:00:00.47
# Mc/sec: 1317.08
//
Query:       MMETSP1137-20121227|8445_1  [L=532]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.078    8.5  45.5       0.25    6.8  27.8    2.0  2  TIGR02168 SMC_prok_B: chromosome segregation protein SMC
       0.23    6.9  43.0        0.4    6.1  28.2    1.9  2  TIGR02169 SMC_prok_A: chromosome segregation protein SMC


Domain annotation for each model (and alignments):
>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   5.1   0.00036      0.73     347     490 ..      47     187 ..       9     189 .. 0.65
   2 ?    6.8  27.8   0.00012      0.25     264     467 ..     150     348 ..     138     364 .. 0.72

  Alignments for each domain:
  == domain 1    score: 5.2 bits;  conditional E-value: 0.00036
   TIGR02168 347 eelkeelesleaeleeaeaeleelesrleeleeeleelrsevaeleeqlaslnaelerleaeleqleerrerlkqeieelekkleeaeaelkelqeeleeleeeleeleeelerleealeeleeeleeaeqalqkaeeelaqlq 490
                 +e +++  +++++++++++  + + + + +  +++++l+s++  +e+++++l+++ ++l a+le  ++ ++++ + +++  +++ ++  ++++++ +  + +   ++  eel++ ++++++lee+l+  e +l ++ + +++++
  MMETSP1137-20121227|8445_1  47 AEPANKGGAIDKKIAKQRKRNKCSLKGMLKFADQWTQLSSAYVVAEKRVRRLKKKCRKLAAKLEGHDQPVDEMAAGVSKM-RRVGDLGGNMDDVRDTQPTPD--AKTGVEELAECRAQKSSLEEQLRLREAELADKDKAFEEAN 187
                 33444555666777777777777778888888888888888888888888888888888888888888888888888777.567777778877777655443..3344455555555555555555555555555555555554 PP

  == domain 2    score: 6.8 bits;  conditional E-value: 0.00012
   TIGR02168 264 eleeeleelrlekseleeeleelqkelqelkaeisrleqeieilkerleqlekeleeleeqleeleskkeeleeelaeleeeleelkeelesleaeleeaeaeleelesrleeleeeleel.rsevaeleeqlaslnaelerleaeleqleerrerlkqeieelekkleeaeaelkelqeeleeleeeleeleeelerleealee 467
                 +  eel+e r++ks+lee+l+  ++el +  ++ ++ +++   + +r+   e+ + +l  qle+le++k + ee++ ++++++++ +ee+++l++e++++  ++++l+++++ + ++l+e+ ++++a++    ++l+ +le++ea+  +l+e+++ l++ +  ++++      + k l+ +l  +ee+ +e++++l+rl++a++ 
  MMETSP1137-20121227|8445_1 150 TGVEELAECRAQKSSLEEQLRLREAELADKDKAFEEANAKHLATFQRQ---EDAELQLRGQLEKLEADKLQVEESARDWKDKFDKKQEEVAALREEHSRKVINMAALHDAERLQAKRLNEQtKAALADTVAANKALAVRLEQVEAQHRALAEQLR-LREAQAVEKDDRA--LRKEKLLEYRLRCSEEKRNEMKNRLARLQNAANC 348
                 556788999999999999999999999998888888887766666665...46777888899999999999999999999999999999999999999999999999998888887776551567888889999999999999999999998864.4444433333322..3444555556666666666777777777666554 PP

>> TIGR02169  SMC_prok_A: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.2    0.0032       6.5     446     507 ..      55     116 ..      21     134 .. 0.55
   2 ?    6.1  28.2   0.00019       0.4     184     448 ..      99     358 ..      91     365 .. 0.73

  Alignments for each domain:
  == domain 1    score: 2.0 bits;  conditional E-value: 0.0032
   TIGR02169 446 elaeeikkaeqkleqlkedlekaekelrklkeeleklekelselerelaeleaqakaseees 507
                 +++++i+k++++ +   + + k  ++  +l++ +   ek+++ l+++  +l a+ +   + +
  MMETSP1137-20121227|8445_1  55 AIDKKIAKQRKRNKCSLKGMLKFADQWTQLSSAYVVAEKRVRRLKKKCRKLAAKLEGHDQPV 116
                 34445555555555555555555555555555555555555555555555444443333333 PP

  == domain 2    score: 6.1 bits;  conditional E-value: 0.00019
   TIGR02169 184 eeriervelvieevrqqlerLekerekaerYkeLkkekreleltlllkelealekqkekiekelaeleeelekleeeieelekeleeiekkleelnkkieklgeeeqlavkekleelkaeiekleraiaekeeeledaeerlakaeaeidklkeeieelereieeekke.reklkeelkelkeeleelraeleevdkeaaelreelkelkekleklkeelnelkreldrlleelkrleeelaelkaelerieekia.eleeeleela 448
                 +++  ++ + +e   q ++ ++    k  r  +L  +  +++ t      ++  +++++ +++ ++lee+l   e+e+ ++ k +ee+++k  +      +  e+  l+++ +le+l+a+  ++e++ ++ +++  + +e++a + +e +++  ++++l+ + + ++k+  e+ k++l++  +  ++l  +le+v++++++l e+l  ++    ++ e+ +   r+++ l  +l+  ee+++e+k+ l+r++++ + e++e ++el+
  MMETSP1137-20121227|8445_1  99 KKKCRKLAAKLEGHDQPVDEMAAGVSKMRRVGDLGGNMDDVRDTQPTPDAKTGVEELAECRAQKSSLEEQLRLREAELADKDKAFEEANAKHLATF----QRQEDAELQLRGQLEKLEADKLQVEESARDWKDKFDKKQEEVAALREEHSRKVINMAALHDAERLQAKRlNEQTKAALADTVAANKALAVRLEQVEAQHRALAEQLRLREA---QAVEKDDRALRKEKLLEYRLRCSEEKRNEMKNRLARLQNAANcEVKEMMTELD 358
                 566666666666666666666666667777777777777777777777777777777777777777777777777777777777777665433322....2357789***************************************************987666554441688999************************99988765443...23333333333344444466777788899999999998765436777666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (532 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       399  (0.0972696); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.14s 00:00:00.66 Elapsed: 00:00:00.74
# Mc/sec: 948.89
//
Query:       MMETSP1137-20121227|8446_1  [L=151]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.8e-05   21.4   0.0    3.8e-05   20.9   0.0    1.2  1  TIGR03516 ppisom_GldI: peptidyl-prolyl isomerase, gliding motility-associated
     0.0033   14.2   0.0     0.0036   14.0   0.0    1.0  1  TIGR00115 tig: trigger factor


Domain annotation for each model (and alignments):
>> TIGR03516  ppisom_GldI: peptidyl-prolyl isomerase, gliding motility-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   0.0   1.8e-08   3.8e-05      82     175 ..      50     145 ..      40     147 .. 0.86

  Alignments for each domain:
  == domain 1    score: 20.9 bits;  conditional E-value: 1.8e-08
   TIGR03516  82 etktpetgDlvsfeyeikaldgdviyskeelgpk..tykvdqedlisGlrdglklmkegeevtfllPsykayGyyGdedkigsnlpikstvtllni 175
                  ++ p+ g +v  +y+ k  dg+v  +      +  ++++   ++i+G   g+  m  ge++++   s  +yG+ G    i +n  ++ +v l+++
  MMETSP1137-20121227|8446_1  50 GKTFPKAGQMVRAHYTGKLRDGTVFDTSRGFLKQpfQFQIGAGEVIKGWDVGMMKMSVGEKAVLTCSSDYGYGMRGAPPDIPPNAELIFDVELVSV 145
                 4567999********999999999988888755511667888*************************************************99876 PP

>> TIGR00115  tig: trigger factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.0   1.7e-06    0.0036     150     212 ..      55     119 ..      43     145 .. 0.85

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 1.7e-06
   TIGR00115 150 ekgDivtidfegkv.dGeafeggka...edfelelgsgqfipgfeeqlvGmkaGeekeikvtFpedy 212
                 ++g +v   ++gk  dG  f+   +   + f++++g+g++i+g + +++ m++Ge+++++++  +dy
  MMETSP1137-20121227|8446_1  55 KAGQMVRAHYTGKLrDGTVFDTSRGflkQPFQFQIGAGEVIKGWDVGMMKMSVGEKAVLTCS--SDY 119
                 788899999999554999998666555599***************************99876..555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (151 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        65  (0.0158459); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.18u 0.12s 00:00:00.30 Elapsed: 00:00:00.32
# Mc/sec: 622.82
//
Query:       MMETSP1137-20121227|8447_1  [L=175]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (175 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       155  (0.0377864); expected 82.0 (0.02)
Passed bias filter:                      105  (0.0255973); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.13s 00:00:00.31 Elapsed: 00:00:00.41
# Mc/sec: 563.37
//
Query:       MMETSP1137-20121227|8448_1  [L=312]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.9e-35  120.3   0.0    2.8e-35  119.8   0.0    1.2  1  TIGR03584 PseF: pseudaminic acid CMP-transferase
    5.3e-08   30.4   0.0    7.6e-08   29.9   0.0    1.1  1  TIGR00466 kdsB: 3-deoxy-D-manno-octulosonate cytidylyltransferase
     0.0052   14.1   0.0     0.0085   13.4   0.0    1.3  1  TIGR00453 ispD: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase


Domain annotation for each model (and alignments):
>> TIGR03584  PseF: pseudaminic acid CMP-transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  119.8   0.0     2e-38   2.8e-35       1     217 [.       8     219 ..       8     224 .. 0.84

  Alignments for each domain:
  == domain 1    score: 119.8 bits;  conditional E-value: 2e-38
   TIGR03584   1 vaiipARggskRiprknikeFlgkPliaysieaAlesglFdkvvvstDdeeiaevAkkyGAkvpflRpkeladDftgtaevvkhaieelkkqkeeellCclYatapllqakaLkeafeklkekekkfvfsvt...efefpiqRalklkengkvemlqpehlktRsqDLeeayhDaGqfYwgkseafleeevifsaesiaivlprllvqDiDtleDwelAe 217
                 +a+ipARggs  iprknik   g+Pli + i+ Al+s++F +v vstDd+eiae+A+k GA v   R  e a   ++t + +++    + ++ e+++lC++ at+pl+  ++ +++++k+++ +++++ +++   +f +++  +    ++++   l     + R qD +    + G+fY++k++ + +e+  ++ +   +++ ++  +++D   Dw++  
  MMETSP1137-20121227|8448_1   8 IAVIPARGGSVSIPRKNIKLLAGRPLIDWVIRPALDSAVFAEVWVSTDDDEIAEIATKSGALVHR-RAPETATSTASTESALMDF---VASHPEYDILCLIQATSPLIVPQDFRDGLRKMASAKADSLVTAVrahRFLWAVDESSGTASAKNYDPL----NRPRRQDWDGELIENGAFYMTKKAVLEKESCRLGGRIALHEMAEHTLTELDSSVDWQIVS 219
                 89***********************************************************9865.7778887777777666555...555588**************************996666555443111455566655555544444444....45688***************************************************9765 PP

>> TIGR00466  kdsB: 3-deoxy-D-manno-octulosonate cytidylyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.9   0.0   5.6e-11   7.6e-08       4     131 ..       8     138 ..       5     144 .. 0.82

  Alignments for each domain:
  == domain 1    score: 29.9 bits;  conditional E-value: 5.6e-11
   TIGR00466   4 vviiParlassrlegkvledikGkPmivrvlekaresga.ervivatddedvaqvvkkfgaevvltskdhnsGterlaevv.ekl.alkddevivnlqGdePliekeiirqvadnlakknvnlaalavkih 131
                 + +iPar  s  ++ k ++ + G+P+i  v++ a +s +  +v v+tdd+++a+++ k ga v     +  + t     +  + + + ++ +++  +q   Pli ++  r+ + ++a  +++   +av+ h
  MMETSP1137-20121227|8448_1   8 IAVIPARGGSVSIPRKNIKLLAGRPLIDWVIRPALDSAVfAEVWVSTDDDEIAEIATKSGALVHRRAPETATSTASTESALmDFVaSHPEYDILCLIQATSPLIVPQDFRDGLRKMASAKADSLVTAVRAH 138
                 569*********************************98757999**************999887665555555544433331333045667788889*******999999999999999999999998876 PP

>> TIGR00453  ispD: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.0   6.2e-06    0.0085       2     129 ..       9     136 ..       8     154 .. 0.76

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 6.2e-06
   TIGR00453   2 avilAAGrgeRlgskvpKqylelagkplllhaleallaseavkevvvvvseedeellqkalkakaevklvkGGetRqeSVlngLkale...adaeiVlvhDaARplvkkelldrllealekaak.aailalp 129
                 avi+A G +  + +k       lag+pl+ ++++  l+s  ++ev v +++++ +++  +  a  +   +   +t + S  ++L       ++++i +   a  pl+ ++++ + l+++++a++  ++ a+ 
  MMETSP1137-20121227|8448_1   9 AVIPARGGSVSIPRKNI---KLLAGRPLIDWVIRPALDSAVFAEVWVSTDDDEIAEIATKSGALVH-RRAPETATSTASTESALMDFVashPEYDILCLIQATSPLIVPQDFRDGLRKMASAKAdSLVTAVR 136
                 89999888877766644...4689**************************9998888877766444.45555667777777777544436799999999999999999999999888877732225555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (312 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       121  (0.0294978); expected 82.0 (0.02)
Passed bias filter:                       98  (0.0238908); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.26u 0.16s 00:00:00.42 Elapsed: 00:00:00.46
# Mc/sec: 895.23
//
Query:       MMETSP1137-20121227|8449_1  [L=511]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      2e-06   24.9   2.3     0.0011   15.8   0.0    2.6  2  TIGR01622 SF-CC1: splicing factor, CC1-like family
    4.6e-06   23.9   0.0    6.1e-06   23.5   0.0    1.3  1  TIGR01628 PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family
     0.0013   15.1   0.5      0.002   14.5   0.0    1.5  2  TIGR01642 U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor
     0.0039   14.6   0.0      0.012   13.1   0.0    1.7  2  TIGR01661 ELAV_HUD_SF: ELAV/HuD family splicing factor


Domain annotation for each model (and alignments):
>> TIGR01622  SF-CC1: splicing factor, CC1-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0   1.1e-06    0.0011     220     297 ..     108     185 ..      88     222 .. 0.62
   2 !    7.6   0.6   0.00033      0.34      81     178 ..     237     339 ..     227     351 .. 0.62

  Alignments for each domain:
  == domain 1    score: 15.8 bits;  conditional E-value: 1.1e-06
   TIGR01622 220 lkLYvGnlhfnitEqeLrqiFepFGeielvqlqkDpetGrskGyGFiqFsdaeeakeAleklNGlel..AGReikvglas 297
                 + +Yv  +  + + ++Lr +F p G++  v l++       kGy F++F+  +   +A+ ++ G  l   G  +k g ++
  MMETSP1137-20121227|8449_1 108 RTIYVEPVPRDASIDSLRTLFAPCGDVAGVFLPRLRSR-DVKGYAFLEFTTESAVTKAIARFHGAGLgtTG-AVKEGTVK 185
                 34566666666666777777777777777777776666.67777777777777777777777774441033.45555544 PP

  == domain 2    score: 7.6 bits;  conditional E-value: 0.00033
   TIGR01622  81 errredevrrkrkeredrrerrek....eerlkeelteeeRDartvfvl.ql....alklreRdlkEFFskvgkvrdvrlikDrnSrr.SkGvaYvEFydvesvqlAl 178
                 +r++ ++ rr  +++e+    r+      er  +  + +     tv+ + ++     +k   R+++E F+++++v  v      +S+     vaYv F+ +    +A+
  MMETSP1137-20121227|8449_1 237 QRDEYKRLRRAGQTDEEA--SRNSakagAERWAQRAAADAATPHTVMLIsKIgrssSIKKIRREMNEMFEEIAPVEYVDY---GVSNSgDPTVAYVRFKSEVGADTAV 339
                 233333333333333333..333223567787888887778888887651333322677889************987765...3444313579999999988777776 PP

>> TIGR01628  PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.5   0.0     6e-09   6.1e-06     180     246 ..     109     247 ..      69     398 .. 0.76

  Alignments for each domain:
  == domain 1    score: 23.5 bits;  conditional E-value: 6e-09
   TIGR01628 180 NlYvKnlddsvtedklrelFakfGeitSaivkkdeknrkrgfafvnyekaedAkkAveelngkkit........................................................................l 246
                  +Yv  ++ + + d+lr lFa+ G++  +   + +++  +g+af+++ ++ + +kA+ +++g  ++                                                                         
  MMETSP1137-20121227|8449_1 109 TIYVEPVPRDASIDSLRTLFAPCGDVAGVFLPRLRSRDVKGYAFLEFTTESAVTKAIARFHGAGLGttgavkegtvkedavkeagvkedsvkedaekeggvkenavkeggvngagvplrvipkeqwaeqrdeykrlrrA 247
                 58************************************************************99997777777777777777777777777777777777777777766644444444444444444444444444440 PP

>> TIGR01642  U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.0   1.9e-06     0.002     290     365 ..     102     175 ..      77     220 .. 0.83
   2 ?   -4.7   0.7       1.3   1.4e+03      36      86 ..     239     259 ..     231     277 .. 0.39

  Alignments for each domain:
  == domain 1    score: 14.5 bits;  conditional E-value: 1.9e-06
   TIGR01642 290 ktvldsedklyignLPldlkddqvkeLLesFGdLkaFnliKdlatGlsKGyaFceykdssvtdlAiaaLnGiklgd 365
                 k+v+ds+  +y++ +P d   d ++ L  + Gd+ +  l + l     KGyaF e+   s    Aia   G  lg 
  MMETSP1137-20121227|8449_1 102 KAVSDSR-TIYVEPVPRDASIDSLRTLFAPCGDVAGVFLPR-LRSRDVKGYAFLEFTTESAVTKAIARFHGAGLGT 175
                 5667765.6*************************9987765.667789*********************9998875 PP

  == domain 2    score: -4.7 bits;  conditional E-value: 1.3
   TIGR01642  36 dRdrrdrrrsrrkdsRdRdrrrydsrsissleedsrrrSRdrirrrsrsss 86 
                 d                               ++  rr+ + +++ sr+s 
  MMETSP1137-20121227|8449_1 239 DE------------------------------YKRLRRAGQTDEEASRNSA 259
                 22..............................2222222222222222222 PP

>> TIGR01661  ELAV_HUD_SF: ELAV/HuD family splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.1   0.0   1.1e-05     0.012     251     336 ..      91     174 ..       9     187 .. 0.54
   2 ?   -2.4   0.0      0.57   5.8e+02     132     152 ..     323     343 ..     310     348 .. 0.84

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 1.1e-05
   TIGR01661 251 gavaglaagaqiaasdgagycifvynlspdtd.eavlqlfgpfGavqsvkiirdlttnkckGygfvsmtnydeaalailslnGytlg 336
                 + va l + +  a sd     i+v  +  d+  +++  lf+p G v  v + r l+++  kGy+f+  t     ++ai+ + G  lg
  MMETSP1137-20121227|8449_1  91 ARVARLDKLPPKAVSD--SRTIYVEPVPRDASiDSLRTLFAPCGDVAGVFLPR-LRSRDVKGYAFLEFTTESAVTKAIARFHGAGLG 174
                 3344454444444433..46688888887766255558899999988886655.668888999998888888888888888888776 PP

  == domain 2    score: -2.4 bits;  conditional E-value: 0.57
   TIGR01661 132 GvGfirfdkreeadraikaln 152
                  v ++rf     ad+a++ l 
  MMETSP1137-20121227|8449_1 323 TVAYVRFKSEVGADTAVRVLT 343
                 589999999999999999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (511 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       132  (0.0321794); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.45u 0.10s 00:00:00.55 Elapsed: 00:00:00.56
# Mc/sec: 1183.27
//
Query:       MMETSP1137-20121227|8450_1  [L=280]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (280 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       100  (0.0243784); expected 82.0 (0.02)
Passed bias filter:                       31  (0.00755729); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.18s 00:00:00.39 Elapsed: 00:00:00.51
# Mc/sec: 724.65
//
Query:       MMETSP1137-20121227|8451_1  [L=208]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (208 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        98  (0.0238908); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.18s 00:00:00.38 Elapsed: 00:00:00.45
# Mc/sec: 610.08
//
Query:       MMETSP1137-20121227|8453_1  [L=364]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.7e-14   50.3   0.1    4.5e-08   30.4   0.1    3.2  3  TIGR01969 minD_arch: cell division ATPase MinD
    6.1e-12   43.3   0.0    7.8e-10   36.3   0.0    2.1  2  TIGR01968 minD_bact: septum site-determining protein MinD
    8.6e-09   32.8   0.8    2.6e-06   24.6   0.4    2.2  2  TIGR03815 CpaE_hom_Actino: helicase/secretion neighborhood CpaE-like protein
    2.1e-07   28.5   0.0    1.4e-06   25.8   0.0    1.9  1  TIGR01007 eps_fam: capsular exopolysaccharide family
    2.3e-06   25.1   0.1    4.6e-06   24.1   0.0    1.6  1  TIGR03371 cellulose_yhjQ: cellulose synthase operon protein YhjQ
    1.1e-05   22.7   0.0    0.00012   19.3   0.0    2.1  2  TIGR03018 pepcterm_TyrKin: exopolysaccharide/PEPCTERM locus tyrosine autokinase
    2.6e-05   21.7   0.9    7.9e-05   20.1   0.1    2.0  3  TIGR00345 arsA: arsenite-activated ATPase ArsA
    9.1e-05   19.3   0.0    0.00015   18.5   0.0    1.3  1  TIGR03453 partition_RepA: plasmid partitioning protein RepA
    0.00011   19.3   0.1    0.00015   18.8   0.0    1.2  1  TIGR00750 lao: LAO/AO transport system ATPase
    0.00019   19.4   0.0    0.00029   18.7   0.0    1.3  1  TIGR03499 FlhF: flagellar biosynthesis protein FlhF
    0.00024   18.4   0.1    0.00036   17.8   0.1    1.2  1  TIGR01281 DPOR_bchL: light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein
    0.00056   17.4   0.0    0.00094   16.7   0.0    1.3  1  TIGR00455 apsK: adenylylsulfate kinase
     0.0035   14.6   0.0     0.0048   14.2   0.0    1.2  1  TIGR03574 selen_PSTK: L-seryl-tRNA(Sec) kinase
     0.0047   13.0   0.0     0.0071   12.4   0.0    1.2  1  TIGR01005 eps_transp_fam: exopolysaccharide transport protein family
      0.005   14.0   0.2      0.018   12.1   0.1    1.8  2  TIGR02016 BchX: chlorophyllide reductase iron protein subunit X
     0.0097   12.9   0.0      0.016   12.2   0.0    1.4  1  TIGR03029 EpsG: chain length determinant protein tyrosine kinase EpsG
  ------ inclusion threshold ------
      0.012   12.8   0.0      0.017   12.2   0.0    1.2  1  TIGR01287 nifH: nitrogenase iron protein
      0.029   11.5   0.0      0.042   11.0   0.0    1.2  1  TIGR03878 thermo_KaiC_2: KaiC domain protein, AF_0795 family
      0.058    9.1   0.0      0.078    8.7   0.0    1.1  1  TIGR01448 recD_rel: helicase, RecD/TraA family


Domain annotation for each model (and alignments):
>> TIGR01969  minD_arch: cell division ATPase MinD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.4   0.1   2.1e-10   4.5e-08       3      55 ..      60     112 ..      58     144 .. 0.92
   2 !   14.0   0.0   2.1e-05    0.0046     107     169 ..     175     244 ..     153     250 .. 0.81
   3 ?    2.2   0.0     0.085        18     180     209 ..     297     326 ..     291     334 .. 0.86

  Alignments for each domain:
  == domain 1    score: 30.4 bits;  conditional E-value: 2.1e-10
   TIGR01969   3 itiasGkGGtGkttvtanlgvaLaklGkkvlvlDaDiamanLelilgledkkv 55 
                 + + sGkGG+Gk t++a+l+ +La  G +v +lD Di    +  +lgl ++ v
  MMETSP1137-20121227|8453_1  60 VLVLSGKGGVGKSTMAAQLAFSLAARGLRVGLLDVDICGPSIPQMLGLRGQTV 112
                 6789*********************************9988888888877655 PP

  == domain 2    score: 14.0 bits;  conditional E-value: 2.1e-05
   TIGR01969 107 ddvdflliDaPaGlerdavtalaa.......adelllvvnPeissitDalkvkivaeklgtkilGvvlnr 169
                 +  d+lliD+P G   + ++ +          d +++v +P   s++D  k      k  +++lGv+ n 
  MMETSP1137-20121227|8453_1 175 GVLDYLLIDTPPGTSDEHISLVQYlgkvmgpRDGAVIVSTPQEVSLMDVRKELSFCAKTKLNVLGVIENM 244
                 467***********999987654211111126899********************************886 PP

  == domain 3    score: 2.2 bits;  conditional E-value: 0.085
   TIGR01969 180 eeieailevpvlavvPeDpevrraaakgep 209
                 e++ a ++vp l+ vP +pe+ ra+  g +
  MMETSP1137-20121227|8453_1 297 EAMAAAFKVPFLGRVPLEPELTRACENGRS 326
                 6778889*****************988876 PP

>> TIGR01968  minD_bact: septum site-determining protein MinD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.3   0.0   3.6e-12   7.8e-10       4      56 ..      60     112 ..      57     117 .. 0.89
   2 ?    4.8   0.0     0.016       3.4     102     150 ..     166     222 ..     159     240 .. 0.71

  Alignments for each domain:
  == domain 1    score: 36.3 bits;  conditional E-value: 3.6e-12
   TIGR01968   4 ivvtsGkGGvGkttttanlgtalaklgkkvvlvdadiGlrnldlllGlenrvv 56 
                 + v sGkGGvGk+t++a+l+ +la++g +v l+d+di    +  +lGl  + v
  MMETSP1137-20121227|8453_1  60 VLVLSGKGGVGKSTMAAQLAFSLAARGLRVGLLDVDICGPSIPQMLGLRGQTV 112
                 6789*********************************9888888888876665 PP

  == domain 2    score: 4.8 bits;  conditional E-value: 0.016
   TIGR01968 102 kklvkelkee.fdyvlidsPaGiekGfk.......navasadeaivvttPevsavrd 150
                 k+++++++    dy+lid+P G    +        + + + d a++v tP+  ++ d
  MMETSP1137-20121227|8453_1 166 KQFLTDVEWGvLDYLLIDTPPGTSDEHIslvqylgKVMGPRDGAVIVSTPQEVSLMD 222
                 555555555558**********87654411111115667889999999998777766 PP

>> TIGR03815  CpaE_hom_Actino: helicase/secretion neighborhood CpaE-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.6   0.4   1.2e-08   2.6e-06     114     161 ..      60     107 ..      50     120 .. 0.89
   2 !    6.2   0.0    0.0047         1     290     331 ..     296     334 ..     263     343 .. 0.84

  Alignments for each domain:
  == domain 1    score: 24.6 bits;  conditional E-value: 1.2e-08
   TIGR03815 114 vaVvggrGGaGAStlAaalAlaaarsglrtlLvDadPlggGldlllga 161
                 v V++g+GG G St+Aa lA + a +glr+ L+D d  g  +  +lg+
  MMETSP1137-20121227|8453_1  60 VLVLSGKGGVGKSTMAAQLAFSLAARGLRVGLLDVDICGPSIPQMLGL 107
                 789*********************************999988777765 PP

  == domain 2    score: 6.2 bits;  conditional E-value: 0.0047
   TIGR03815 290 aeevaevlgvpllgevrdqrrlaealerGglprasrrrplar 331
                 ae+ a + +vp lg v+ +++l++a e+G++ +a   ++l++
  MMETSP1137-20121227|8453_1 296 AEAMAAAFKVPFLGRVPLEPELTRACENGRSYTA---AALRN 334
                 6789999***********************9443...34444 PP

>> TIGR01007  eps_fam: capsular exopolysaccharide family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.8   0.0   6.7e-09   1.4e-06      18     188 ..      58     243 ..      48     249 .. 0.74

  Alignments for each domain:
  == domain 1    score: 25.8 bits;  conditional E-value: 6.7e-09
   TIGR01007  18 kvllitsvkageGkstvsaniavafaqaGyktLliDgDlrksvlsgvfksrnk.....ikGLtnllsgkadlsdaiketeienLtvitaGpvpPnPteLl......qskkfkelletlr.kyfDyiiiDtpP......igvviDaaiiaravdasiLvveaekikkrevkkakeqleqagskiLGvvln 188
                   +l+ s k g Gkst++a++a+++a  G+++ l+D D+  + +  +   r +      +G + + + +    d+  + ++ +L v++ G + Pn  + +      ++  +k++l  ++  + Dy++iDtpP      i++v     ++   d++++v + +++   +v+k  +   ++  ++LGv+ n
  MMETSP1137-20121227|8453_1  58 HKVLVLSGKGGVGKSTMAAQLAFSLAARGLRVGLLDVDICGPSIPQMLGLRGQtvhqsASGWSPVYVMQPAS-DG-SDDDV-ELGVMSIGFMLPNEDDAViwrgprKNGLIKQFLTDVEwGVLDYLLIDTPPgtsdehISLVQYLGKVMGPRDGAVIVSTPQEVSLMDVRKELSFCAKTKLNVLGVIEN 243
                 45678899*********************************9999888776541111145666555544433.33.34445.5999********98765424332233445555444432589*********66666666666666667777999*******************************976 PP

>> TIGR03371  cellulose_yhjQ: cellulose synthase operon protein YhjQ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.1   0.0   2.1e-08   4.6e-06       3     127 ..      59     189 ..      57     228 .. 0.71

  Alignments for each domain:
  == domain 1    score: 24.1 bits;  conditional E-value: 2.1e-08
   TIGR03371   3 viaivsvkGGvGkTtltAnLasalklsgeevlaidldpqn.....lLrlhfgldlserdGlarallageaWaaaalrssdgvrfvpyGslsadeaea...yleadaewlarllqqldleardvvlidlprgas 127
                  + + s kGGvGk+t++A+La +l+++g +v ++d+d  +     +L+l      +++ G++     + a  + + +++ ++ ++  G +  +e +a   +  ++++++++ l++++    d  lid+p+g s
  MMETSP1137-20121227|8453_1  59 KVLVLSGKGGVGKSTMAAQLAFSLAARGLRVGLLDVDICGpsipqMLGLRGQTVHQSASGWSPVYVMQPA--SDGSDDDVELGVMSIGFMLPNEDDAviwRGPRKNGLIKQFLTDVEWGVLDYLLIDTPPGTS 189
                 5789999************************999998653211114555555555666677766653222..3333333334566666666666666556666677777777777777777777777777554 PP

>> TIGR03018  pepcterm_TyrKin: exopolysaccharide/PEPCTERM locus tyrosine autokinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.0   5.8e-07   0.00012      34      88 ..      56     109 ..      48     113 .. 0.88
   2 ?    1.0   0.0      0.23        49     151     201 ..     179     235 ..     164     243 .. 0.67

  Alignments for each domain:
  == domain 1    score: 19.3 bits;  conditional E-value: 5.8e-07
   TIGR03018  34 nknlimvtsalsgeGksftaiNLAislaleldktvLliDadlrrPslselLglka 88 
                  +  ++v s   g Gks +a+ LA sla+    +v l+D d+  Ps+ ++Lgl+ 
  MMETSP1137-20121227|8453_1  56 VQHKVLVLSGKGGVGKSTMAAQLAFSLAAR-GLRVGLLDVDICGPSIPQMLGLRG 109
                 56778999999*****************86.6789999**************986 PP

  == domain 2    score: 1.0 bits;  conditional E-value: 0.23
   TIGR03018 151 iiiiDtppllv...tsearvlaelv...dqivlVveeertteeavkealsaleskkv 201
                 +++iDtpp  +   +s ++ l +++   d+ v+V   ++++  +v++ ls   ++k+
  MMETSP1137-20121227|8453_1 179 YLLIDTPPGTSdehISLVQYLGKVMgprDGAVIVSTPQEVSLMDVRKELSFCAKTKL 235
                 788999997651113445566677733347899999999999999999998876553 PP

>> TIGR00345  arsA: arsenite-activated ATPase ArsA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.1   3.7e-07   7.9e-05       2      34 ..      63      95 ..      62     107 .. 0.92
   2 ?   -1.1   0.0       1.1   2.4e+02     116     153 ..     166     203 ..     126     206 .. 0.67
   3 ?   -2.8   0.0       3.5   7.6e+02     206     239 ..     210     243 ..     191     244 .. 0.78

  Alignments for each domain:
  == domain 1    score: 20.1 bits;  conditional E-value: 3.7e-07
   TIGR00345  2 fgGKGGVGKTtisaatairlaesgkkvllvSTD 34
                ++GKGGVGK t++a +a  la +g +v l+  D
  MMETSP1137-20121227|8453_1 63 LSGKGGVGKSTMAAQLAFSLAARGLRVGLLDVD 95
                68************************9888766 PP

  == domain 2    score: -1.1 bits;  conditional E-value: 1.1
   TIGR00345 116 lkelkeae.nefDvvifDtAPTGhtlrlLqlpevlskfl 153
                 ++ l++ e +  D++++Dt P G++   ++l++ l+k +
  MMETSP1137-20121227|8453_1 166 KQFLTDVEwGVLDYLLIDTPP-GTSDEHISLVQYLGKVM 203
                 44556666566999****966.77767777777666655 PP

  == domain 3    score: -2.8 bits;  conditional E-value: 3.5
   TIGR00345 206 vlVvipeklslkEseRavkeLkkygikvdavivN 239
                 v+V +p+++sl ++++ +   +k +++v  vi N
  MMETSP1137-20121227|8453_1 210 VIVSTPQEVSLMDVRKELSFCAKTKLNVLGVIEN 243
                 7889999999999988888888877777777755 PP

>> TIGR03453  partition_RepA: plasmid partitioning protein RepA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.0     7e-07   0.00015     106     153 ..      59     107 ..      35     115 .. 0.77

  Alignments for each domain:
  == domain 1    score: 18.5 bits;  conditional E-value: 7e-07
   TIGR03453 106 viavvnfkGGsgktttaahLaqylalrGyrvLavDlDP.qaslsalfGv 153
                  + v+  kGG gk t aa La  la rG rv  +D+D    s+  ++G+
  MMETSP1137-20121227|8453_1  59 KVLVLSGKGGVGKSTMAAQLAFSLAARGLRVGLLDVDIcGPSIPQMLGL 107
                 4568899************************999999513466666665 PP

>> TIGR00750  lao: LAO/AO transport system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.0   7.1e-07   0.00015      35      75 ..      59      99 ..      43     129 .. 0.89

  Alignments for each domain:
  == domain 1    score: 18.8 bits;  conditional E-value: 7.1e-07
   TIGR00750 35 hvvGltGvPGaGkstlveklieelrrrGlkvaviavDPssp 75
                +v+ l G  G+Gkst+  +l+ +l  rGl+v+++ vD   p
  MMETSP1137-20121227|8453_1 59 KVLVLSGKGGVGKSTMAAQLAFSLAARGLRVGLLDVDICGP 99
                677899******************************96655 PP

>> TIGR03499  FlhF: flagellar biosynthesis protein FlhF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.0   1.4e-06   0.00029     196     237 ..      56      95 ..      46      97 .. 0.87

  Alignments for each domain:
  == domain 1    score: 18.7 bits;  conditional E-value: 1.4e-06
   TIGR03499 196 ekggviaLvGptGvGKTTTlAKLAarfvlehgkkkValiTtD 237
                  +++v++L G  GvGK T  A LA  ++ + g  +V+l+ +D
  MMETSP1137-20121227|8453_1  56 VQHKVLVLSGKGGVGKSTMAAQLAFSLAAR-GL-RVGLLDVD 95 
                 5789************************99.66.99999877 PP

>> TIGR01281  DPOR_bchL: light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.1   1.6e-06   0.00036       2      33 ..      60      91 ..      59     111 .. 0.86

  Alignments for each domain:
  == domain 1    score: 17.8 bits;  conditional E-value: 1.6e-06
   TIGR01281  2 ilavyGkGGiGksttssnlsvalakkGkkvlq 33
                +l + GkGG+Gkst ++ l+ +la +G +v  
  MMETSP1137-20121227|8453_1 60 VLVLSGKGGVGKSTMAAQLAFSLAARGLRVGL 91
                68889***********************9954 PP

>> TIGR00455  apsK: adenylylsulfate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0   4.4e-06   0.00094      12      67 ..      52     107 ..      47     115 .. 0.84

  Alignments for each domain:
  == domain 1    score: 16.7 bits;  conditional E-value: 4.4e-06
   TIGR00455  12 akkkqksvvlWltGlsgsGkstianalekkLeekglrvevLDGDnvrhgLnkdLGf 67 
                  + + +  vl l G  g Gkst+a  l+  L  +glrv +LD D     + + LG+
  MMETSP1137-20121227|8453_1  52 RLADVQHKVLVLSGKGGVGKSTMAAQLAFSLAARGLRVGLLDVDICGPSIPQMLGL 107
                 55556667999*******************************99877777666665 PP

>> TIGR03574  selen_PSTK: L-seryl-tRNA(Sec) kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.0   2.2e-05    0.0048       2      44 ..      61     103 ..      60     117 .. 0.90

  Alignments for each domain:
  == domain 1    score: 14.2 bits;  conditional E-value: 2.2e-05
   TIGR03574   2 iiltGlPgvGkstfskelakklseknidviilgtdllreslpv 44 
                 ++l G  gvGkst++ +la  l+ ++++v +l+ d+   s+p+
  MMETSP1137-20121227|8453_1  61 LVLSGKGGVGKSTMAAQLAFSLAARGLRVGLLDVDICGPSIPQ 103
                 89*********************************99888886 PP

>> TIGR01005  eps_transp_fam: exopolysaccharide transport protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.4   0.0   3.3e-05    0.0071     541     600 ..      53     111 ..      47     120 .. 0.85

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 3.3e-05
   TIGR01005 541 ladaesevvelasplpdvGksiieanlaaliAaggkRvllidadirkaalsqilvkaeks 600
                 lad + +v++l s + +vGks ++a la  +Aa g Rv l+d di  + + q+l+ + ++
  MMETSP1137-20121227|8453_1  53 LADVQHKVLVL-SGKGGVGKSTMAAQLAFSLAARGLRVGLLDVDICGPSIPQMLGLRGQT 111
                 56666666665.56899*************************************987665 PP

>> TIGR02016  BchX: chlorophyllide reductase iron protein subunit X
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.1   0.1   8.5e-05     0.018       2      39 ..      60      97 ..      59     114 .. 0.85
   2 ?   -0.9   0.0      0.79   1.7e+02     196     220 ..     294     318 ..     285     360 .. 0.77

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 8.5e-05
   TIGR02016  2 iiaiyGkGGiGksftttnlsaklallgkrvlqlGcdpk 39
                ++ + GkGG+Gks + + l+  la  g rv +l  d  
  MMETSP1137-20121227|8453_1 60 VLVLSGKGGVGKSTMAAQLAFSLAARGLRVGLLDVDIC 97
                67889*************************99988755 PP

  == domain 2    score: -0.9 bits;  conditional E-value: 0.79
   TIGR02016 196 Gvaeafakkvgipvlakipldekvr 220
                 G aea a +  +p l ++pl+ ++ 
  MMETSP1137-20121227|8453_1 294 GGAEAMAAAFKVPFLGRVPLEPELT 318
                 7899999999*********998875 PP

>> TIGR03029  EpsG: chain length determinant protein tyrosine kinase EpsG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.2   0.0   7.5e-05     0.016     101     172 ..      56     125 ..      47     243 .. 0.67

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 7.5e-05
   TIGR03029 101 edrkvlavvsaksGeGcsfiaanlaivfsqlGektllidanlrePeqhrlfklsedrGlsdvlaGrsdleai 172
                  ++kvl v s+k G G+s +aa la  ++  G ++ l+d ++  P   +++ l +++ + +   G s+  ++
  MMETSP1137-20121227|8453_1  56 VQHKVL-VLSGKGGVGKSTMAAQLAFSLAARGLRVGLLDVDICGPSIPQMLGLRGQT-VHQSASGWSPVYVM 125
                 455665.679***********************************999999887765.34444565655555 PP

>> TIGR01287  nifH: nitrogenase iron protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   8.1e-05     0.017       4      37 ..      62      95 ..      59     116 .. 0.79

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 8.1e-05
   TIGR01287  4 aiyGkGGiGksttvqniaaalaeagkkvlvvGcd 37
                 + GkGG+Gkst+++ +a +la+ g +v ++  d
  MMETSP1137-20121227|8453_1 62 VLSGKGGVGKSTMAAQLAFSLAARGLRVGLLDVD 95
                678********************99998776665 PP

>> TIGR03878  thermo_KaiC_2: KaiC domain protein, AF_0795 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00019     0.042      35      90 ..      57     112 ..      41     129 .. 0.86

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 0.00019
   TIGR03878  35 aysvlnitGvsdtGksllveqfavkqaskGekvlfvtvesPaefvaaslklraeal 90 
                 +  vl ++G    Gks ++ q a + a++G +v  + v+  ++ + + l lr +++
  MMETSP1137-20121227|8453_1  57 QHKVLVLSGKGGVGKSTMAAQLAFSLAARGLRVGLLDVDICGPSIPQMLGLRGQTV 112
                 457999*******************************9999998888888887765 PP

>> TIGR01448  recD_rel: helicase, RecD/TraA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   0.0   0.00036     0.078     336     376 ..      56      99 ..      49     117 .. 0.70

  Alignments for each domain:
  == domain 1    score: 8.7 bits;  conditional E-value: 0.00036
   TIGR01448 336 iqdkvviltGGPGtGKtTvtkaii.elaee..legllevvLaAP 376
                 +q+kv++l+G  G+GK+T+   ++ +la++    gll+v ++ P
  MMETSP1137-20121227|8453_1  56 VQHKVLVLSGKGGVGKSTMAAQLAfSLAARglRVGLLDVDICGP 99 
                 69****************98776513333211234577777777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (364 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       210  (0.0511945); expected 82.0 (0.02)
Passed bias filter:                      204  (0.0497318); expected 82.0 (0.02)
Passed Vit filter:                        67  (0.0163335); expected 4.1 (0.001)
Passed Fwd filter:                        19  (0.00463189); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              19  [number of targets reported over threshold]
# CPU time: 0.45u 0.17s 00:00:00.62 Elapsed: 00:00:00.73
# Mc/sec: 658.14
//
Query:       MMETSP1137-20121227|8454_1  [L=321]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (321 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        65  (0.0158459); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.14s 00:00:00.37 Elapsed: 00:00:00.38
# Mc/sec: 1114.96
//
Query:       MMETSP1137-20121227|8455_1  [L=63]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (63 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       104  (0.0253535); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.28
# Mc/sec: 296.98
//
Query:       MMETSP1137-20121227|8456_1  [L=133]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (133 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        67  (0.0163335); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.15s 00:00:00.30 Elapsed: 00:00:00.44
# Mc/sec: 398.97
//
Query:       MMETSP1137-20121227|8457_1  [L=205]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      0.001   16.2   0.5     0.0013   15.9   0.3    1.1  1  TIGR03025 EPS_sugtrans: exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase


Domain annotation for each model (and alignments):
>> TIGR03025  EPS_sugtrans: exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.3   3.2e-07    0.0013      18     119 ..      92     190 ..      70     201 .. 0.65

  Alignments for each domain:
  == domain 1    score: 15.9 bits;  conditional E-value: 3.2e-07
   TIGR03025  18 lslkllleeeesslllllllllllilfala...glyrskrrrslleelarvllalllllllllalafllkslslsrlvlllalllalllllllrlllrrllrrlr 119
                 +s+++ +e +  ++++ ++l+++l +   a   g+y+   r s l+ l++++ a+++++l+ ++l  l++++  +  +++++l+++++ll  +r++   +++r++
  MMETSP1137-20121227|8457_1  92 RSSHSSDEGSLLATAAPFMLAWAL-A---ApplGAYK--DRTSALQALRQIMPAVVAAVLFGCTLRGLTQDHMPAPPFWVVSLVANTILLGGWRMIYFLVVERTS 190
                 222222222222222222222222.2...23236777..888999*************************66666689999*****************9999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (205 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       129  (0.0314481); expected 82.0 (0.02)
Passed bias filter:                      100  (0.0243784); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.21u 0.14s 00:00:00.35 Elapsed: 00:00:00.28
# Mc/sec: 966.35
//
Query:       MMETSP1137-20121227|8458_1  [L=556]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.7e-27   91.8   0.0    4.9e-26   88.9   0.0    2.0  2  TIGR02956 TMAO_torS: TMAO reductase sytem sensor TorS
    4.8e-18   63.1   0.0    8.8e-16   55.6   0.0    2.1  1  TIGR02966 phoR_proteo: phosphate regulon sensor kinase PhoR
    4.2e-13   46.6   1.9    3.2e-12   43.6   0.0    2.1  2  TIGR02916 PEP_his_kin: putative PEP-CTERM system histidine kinase
    1.3e-10   38.7   0.0    2.9e-10   37.5   0.0    1.6  2  TIGR01386 cztS_silS_copS: heavy metal sensor kinase
    2.1e-07   27.7   0.0    4.2e-07   26.7   0.0    1.4  1  TIGR02938 nifL_nitrog: nitrogen fixation negative regulator NifL
    5.1e-07   26.2   0.0    8.6e-07   25.4   0.0    1.3  1  TIGR03785 marine_sort_HK: proteobacterial dedicated sortase system histidine kinase
  ------ inclusion threshold ------
      0.013   13.5   0.0       0.46    8.6   0.0    2.6  2  TIGR00756 PPR: pentatricopeptide repeat domain


Domain annotation for each model (and alignments):
>> TIGR02956  TMAO_torS: TMAO reductase sytem sensor TorS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.2     0.071        42     443     480 ..     284     321 ..     252     344 .. 0.74
   2 !   88.9   0.0   8.3e-29   4.9e-26     511     682 ..     376     551 ..     357     555 .. 0.89

  Alignments for each domain:
  == domain 1    score: -0.2 bits;  conditional E-value: 0.071
   TIGR02956 443 LneEvlnHakAraeAeeAnrAKSaFLAtmSHEiRTPln 480
                  ++E  + +  r+  ee  + +  +  +mSH+  TP+ 
  MMETSP1137-20121227|8458_1 284 AESEQRAMDAERVAHEESLQMRNRYVGAMSHDFGTPVA 321
                 455556666667777888999999************74 PP

  == domain 2    score: 88.9 bits;  conditional E-value: 8.3e-29
   TIGR02956 511 sLldiLnDiLDySkiEaG.hlsiserafdlskLledvlhlmes.raqekgiqLsleidedlpevlqgDlsrirQvliNlvgNaiKFTdrGsvvlrvslndds.llfeVeDtGvGiaeeeqetlFkaftqae.grkksgGTGLGLAiskrlveamdgelsveSelgkGScFafelpl 682
                  L  i    L ySk+ aG +l+    +f++++Lle+v  + +  r         + ++ ++p+v+  D + +  vliNl +N+iK T +G ++l+ +++d+  l ++V DtG G++ +   +lF++f+ a   + ++  TGLGL  sk+l+ +++gels + +  +G  F+ ++pl
  MMETSP1137-20121227|8458_1 376 LLEVIRQKALAYSKLQAGaDLEPTLAHFSPTELLEKVASITRXmRXTXXLXXVEVCVSPEVPAVVRSDRNWLFMVLINLASNSIKHTAEGTLTLSAFVDDEArLSLQVRDTGSGVPAHFVPKLFEPFSSACtAKSSVESTGLGLYHSKQLARLLEGELSHAPNRPRGAVFTAHVPL 551
                 3444556789********99*******************987624444444567888899*****************************************99**************************9967788899*******************************999987 PP

>> TIGR02966  phoR_proteo: phosphate regulon sensor kinase PhoR
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.6   0.0   1.5e-18   8.8e-16      63     332 ..     253     548 ..     240     549 .. 0.71

  Alignments for each domain:
  == domain 1    score: 55.6 bits;  conditional E-value: 1.5e-18
   TIGR02966  63 ylaekkaeep..lelksplneervlevrivpygeeelllvarDvtklkrleqmRrdFvanvsHELrtPLtvlkGyletleeepeeddea...................aekalelmeeqskrmqsL..v.edLltLsrlEsa.akekeeekvdvaelleelkkeaealseek...ehqielevdaavkvkgdeeeLrsalsNLveNAikytpeggeitvr.weeeeegaelsvkDtGeGIaaehlprltERFYRvdksrsretgGtGLGLaIvkHvlerheaeLeieSelgkGstFsvk 332
                 yl+ k+a++   l  ++++  e+++ +   + ++e++ + a  v + ++l qmR+ +v  +sH+  tP++vlk  l +l+ + e+d+e+                   ++k l+l+++ s  ++ L  + ++ l+ s+l +  + e +  +++ +elle++++ ++ +  +     +++ ++ +  + v++d++ L  +l NL +N ik+t eg+ +t++ +  +e++  l+v+DtG G++a+ +p+l+E F    +++s+ +  tGLGL   k   +  e+eL+ + +  +G++F+++
  MMETSP1137-20121227|8458_1 253 YLQDKQARSLyaLMKEQKVACEEKVAATRRAAESEQRAMDAERVAHEESL-QMRNRYVGAMSHDFGTPVAVLKMLLGLLRMRIESDEEKrlaiapeqpptvrvrscddNAKLLDLVRRASAALELLevIrQKALAYSKLQAGaDLEPTLAHFSPTELLEKVASITRXMRXTXxlxXVEVCVSPEVPAVVRSDRNWLFMVLINLASNSIKHTAEGT-LTLSaFVDDEARLSLQVRDTGSGVPAHFVPKLFEPFSSACTAKSSVE-STGLGLYHSKQLARLLEGELSHAPNRPRGAVFTAH 548
                 55555554433355556677777777777778888888888888887776.7********************97777775443222221011111111111111111134555555555554432221314568889999862456667888889999988877766655541114666666688899***********************9875.566505566667*************************9999999765.6*********************99999**999987 PP

>> TIGR02916  PEP_his_kin: putative PEP-CTERM system histidine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   3.3      0.36   2.1e+02       8      81 ..     126     199 ..     119     255 .. 0.67
   2 !   43.6   0.0   5.5e-15   3.2e-12     542     679 .]     402     550 ..     378     550 .. 0.76

  Alignments for each domain:
  == domain 1    score: -2.0 bits;  conditional E-value: 0.36
   TIGR02916   8 vaylvlslllva.awrkrlaggllllaaalsavwalasaalvllkkalkllvlvlevlrdavwlaflltllrrtl 81 
                  a ++l+ + +  a  +  a ++++++  + +v  l+s +++  +++ +l v++ e +  a+  afll++l  ++
  MMETSP1137-20121227|8458_1 126 SAAFILMRIGAQeAKDQLRAQRFMVTTLYVLTVIRLSSETFSKAASPDTLEVMICEQMFCATR-AFLLMILLPSM 199
                 333444555555144555566788888889999999999999999999999999999999998.67766665222 PP

  == domain 2    score: 43.6 bits;  conditional E-value: 5.5e-15
   TIGR02916 542 avdlvdllervieskraqk.....prievsvdkd..levradrerlervlghLvqNAleATeeeGkVkirverek.eaavieieDsGqGmseeFirerLFkPFdt...tKk..aGmGiGvyesreyveelGGeieveStpgkGtiftlvlP 679
                  ++ ++lle+v    r ++       +ev v+ +    vr dr+ l  vl +L+ N +  T  eG+ ++++   +  ++++++ D+G+G++ +F+  +LF+PF++   +K+     G+G+y s+++ + l Ge++ + +  +G++ft  +P
  MMETSP1137-20121227|8458_1 402 HFSPTELLEKVASITRXMRxtxxlXXVEVCVSPEvpAVVRSDRNWLFMVLINLASNSIKHTA-EGTLTLSAFVDDeARLSLQVRDTGSGVPAHFV-PKLFEPFSSactAKSsvESTGLGLYHSKQLARLLEGELSHAPNRPRGAVFTAHVP 550
                 5555566665554443333000003345555444347899*******************996.7******998886899***************5.79*****9622246556689*******************************9887 PP

>> TIGR01386  cztS_silS_copS: heavy metal sensor kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0      0.81   4.8e+02     107     119 ..     282     294 ..     250     329 .. 0.42
   2 !   37.5   0.0   4.9e-13   2.9e-10     338     442 ..     431     534 ..     393     550 .. 0.85

  Alignments for each domain:
  == domain 1    score: -2.7 bits;  conditional E-value: 0.81
   TIGR01386 107 aaakaseeeeaae 119
                  aa+++++  +ae
  MMETSP1137-20121227|8458_1 282 RAAESEQRAMDAE 294
                 1111111111111 PP

  == domain 2    score: 37.5 bits;  conditional E-value: 4.9e-13
   TIGR01386 338 slkvegeaevegdaqlfrRalsNLlsNAlrytpegstievrverradevevsventgkgipeeelsrlFdRFYRvdaarsnseegtGLGLaIvrsiveaHgGeve 442
                  ++ e+ a+v++d++ +  +l NL sN +++t+eg+ +     +++  ++++v +tg+g+p++  ++lF+ F  +  a+s  e+ tGLGL   + ++++  Ge++
  MMETSP1137-20121227|8458_1 431 CVSPEVPAVVRSDRNWLFMVLINLASNSIKHTAEGTLTLSAFVDDEARLSLQVRDTGSGVPAHFVPKLFEPFSSACTAKSSVES-TGLGLYHSKQLARLLEGELS 534
                 444566799***************************9999999999***************************99999987766.*****888888887777776 PP

>> TIGR02938  nifL_nitrog: nitrogen fixation negative regulator NifL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.7   0.0   7.1e-10   4.2e-07     376     468 ..     434     525 ..     411     542 .. 0.79

  Alignments for each domain:
  == domain 1    score: 26.7 bits;  conditional E-value: 7.1e-10
   TIGR02938 376 avlPavlGsesrlrslfkalvdnaieamaqkqvkrrelsistaveddl.irveiedsGPGiPadlrlkvfePffttkass..rkhvGmGlavaqei 468
                 + +Pav+ s+     lf  l++ a +++++       l++s+ v+d+  + +++ d+G G+Pa ++ k fePf ++ +++   +  G+Gl   +++
  MMETSP1137-20121227|8458_1 434 PEVPAVVRSD--RNWLFMVLINLASNSIKHT--AEGTLTLSAFVDDEArLSLQVRDTGSGVPAHFVPKLFEPFSSACTAKssVESTGLGLYHSKQL 525
                 5566666544..3457888888888887777..7789******99875489**********************98766552266788888777765 PP

>> TIGR03785  marine_sort_HK: proteobacterial dedicated sortase system histidine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.4   0.0   1.5e-09   8.6e-07     492     692 ..     312     541 ..     300     551 .. 0.80

  Alignments for each domain:
  == domain 1    score: 25.4 bits;  conditional E-value: 1.5e-09
   TIGR03785 492 LsHElrTPvAvVrsSLenLelqklekekqk........................YleRAqegverlsaiLnsmseAtRlEqalqsa.ekedfdlsevl...selvqgYqqlyeeqrfelei.eeedlvlrgspellaQllDKlvdNaieFskedglIevslkekkkealltveNeGpplPedlkeklFdsmvSvRaqkaqeqpHLGlGLyIvrliadfHqgeik.aeNraq 692
                 +sH+  TPvAv +  L  L +  +++e+++                         + RA+++ e l+ i ++  + ++l +  + +   ++f   e+l   ++++   + +     +e+ + +e + v+r   + l  +l  l +N+i  + e++l        + +  l+v+  G+ +P++   klF+++ S  + k+  +   GlGLy ++ +a   +ge++ a Nr +
  MMETSP1137-20121227|8458_1 312 MSHDFGTPVAVLKMLLGLLRMRIESDEEKRlaiapeqpptvrvrscddnaklldLVRRASAALELLEVIRQKALAYSKLQAGADLEpTLAHFSPTELLekvASITRXMRXTXXLXXVEVCVsPEVPAVVRSDRNWLFMVLINLASNSIKHTAEGTLTLSAFVDDEARLSLQVRDTGSGVPAHFVPKLFEPFSSACTAKSSVE-STGLGLYHSKQLARLLEGELShAPNRPR 541
                 68********************9999999999*******************99999***********9998888888887655432134555555555000555555555555555554331566779*************************9998888888999999************************996655555.99********999999998862445555 PP

>> TIGR00756  PPR: pentatricopeptide repeat domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   0.0   0.00078      0.46       5      25 ..     207     227 ..     206     233 .. 0.88
   2 ?    1.8   0.0      0.12        69      18      31 ..     258     271 ..     257     274 .. 0.87

  Alignments for each domain:
  == domain 1    score: 8.6 bits;  conditional E-value: 0.00078
   TIGR00756   5 tlisglckagrveeAlelfde 25 
                 +l+++l+ ag++++Al+l+ +
  MMETSP1137-20121227|8458_1 207 ALLNALFAAGSWHKALQLLSS 227
                 69***************9976 PP

  == domain 2    score: 1.8 bits;  conditional E-value: 0.12
   TIGR00756  18 eAlelfdeMkergi 31 
                  A++l+ +Mke+++
  MMETSP1137-20121227|8458_1 258 QARSLYALMKEQKV 271
                 599********997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (556 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       141  (0.0343735); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.47u 0.17s 00:00:00.64 Elapsed: 00:00:00.55
# Mc/sec: 1334.29
//
Query:       MMETSP1137-20121227|8459_1  [L=159]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.044   10.3  16.2      0.042   10.4  11.2    1.2  1  TIGR01651 CobT: cobaltochelatase, CobT subunit


Domain annotation for each model (and alignments):
>> TIGR01651  CobT: cobaltochelatase, CobT subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4  11.2     1e-05     0.042     209     278 ..      81     150 ..       1     158 [. 0.55

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 1e-05
   TIGR01651 209 sedeedtdddqpredeqeeegeeeeegdeasaaeeaeaaeeeeesgeeeaaeadd.ddlsdeddedaetpg 278
                 +++ +d++dd   +++q ++ +++ee++e+ + ++++  ++e+++ge +  + +d dd ++edd++    g
  MMETSP1137-20121227|8459_1  81 KKNGSDKKDDVDXGEKQYKKDDDDEESEED-DEDDKKDDDDEKKQGEDDDDKRKDdDDDKEEDDDNEHGSG 150
                 344444444444444443333333322222.2333333333344444333333330333333333333233 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (159 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       139  (0.0338859); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.23u 0.19s 00:00:00.42 Elapsed: 00:00:00.26
# Mc/sec: 807.16
//
Query:       MMETSP1137-20121227|8460_1  [L=291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (291 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        78  (0.0190151); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.12s 00:00:00.37 Elapsed: 00:00:00.33
# Mc/sec: 1163.90
//
Query:       MMETSP1137-20121227|8461_1  [L=110]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (110 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        61  (0.0148708); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.13s 00:00:00.29 Elapsed: 00:00:00.42
# Mc/sec: 345.69
//
Query:       MMETSP1137-20121227|8462_1  [L=1249]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1249 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       213  (0.0519259); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.74u 0.15s 00:00:00.89 Elapsed: 00:00:00.73
# Mc/sec: 2258.28
//
Query:       MMETSP1137-20121227|8464_1  [L=255]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.7e-17   61.6   0.1    3.2e-17   60.7   0.0    1.4  2  TIGR02287 PaaY: phenylacetic acid degradation protein PaaY
    6.6e-13   46.5   4.3    4.1e-08   30.9   1.5    2.2  2  TIGR03570 NeuD_NnaD: sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family
    6.9e-10   36.2   1.1    1.1e-05   22.4   0.2    2.2  2  TIGR01853 lipid_A_lpxD: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
    2.9e-09   34.7   0.1    4.7e-09   34.0   0.1    1.3  1  TIGR03532 DapD_Ac: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase
    1.2e-07   28.3   0.2    4.3e-07   26.5   0.1    1.7  1  TIGR02353 NRPS_term_dom: non-ribosomal peptide synthetase terminal domain of unknown function
    9.9e-07   26.6   0.6     0.0013   16.4   0.0    2.8  2  TIGR03308 phn_thr-fam: phosphonate metabolim protein, transferase hexapeptide repeat family
    5.4e-06   23.5   0.0    7.4e-06   23.1   0.0    1.1  1  TIGR02091 glgC: glucose-1-phosphate adenylyltransferase
    7.2e-05   19.6   0.9    0.00015   18.6   0.4    1.6  2  TIGR03992 Arch_glmU: UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase
    8.1e-05   19.8   0.5      0.074   10.1   0.0    2.1  2  TIGR01852 lipid_A_lpxA: acyl-[acyl-carrier-protein]-UDP-N-acetylglucosamine O-acyltransferase
    8.3e-05   19.4   0.2      0.012   12.3   0.0    2.0  2  TIGR01173 glmU: UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase
    0.00027   18.8   0.3    0.00078   17.4   0.2    1.9  1  TIGR01172 cysE: serine O-acetyltransferase
    0.00032   17.5   0.7     0.0091   12.7   0.5    2.1  1  TIGR01208 rmlA_long: glucose-1-phosphate thymidylyltransferase
     0.0019   15.4   1.7       0.11    9.5   0.2    2.1  2  TIGR03991 alt_bact_glmU: UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase
     0.0064   14.2   0.2     0.0097   13.6   0.1    1.3  1  TIGR04008 WcaF: colanic acid biosynthesis acetyltransferase WcaF
  ------ inclusion threshold ------
      0.033   11.5   2.8       0.15    9.3   2.0    2.0  2  TIGR00965 dapD: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase


Domain annotation for each model (and alignments):
>> TIGR02287  PaaY: phenylacetic acid degradation protein PaaY
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0       3.1   8.4e+02      31      61 ..      24      53 ..      21      56 .. 0.79
   2 !   60.7   0.0   1.2e-19   3.2e-17       7     167 ..      70     236 ..      64     251 .. 0.88

  Alignments for each domain:
  == domain 1    score: -2.7 bits;  conditional E-value: 3.1
   TIGR02287 31 krvyvgplaslrgdfgrivlkeganvqdtcv 61
                krv vg   +lr d g+ + + g   qd+ +
  MMETSP1137-20121227|8464_1 24 KRVAVGVGKALR-DTGQAIERMGCRAQDNFI 53
                577777777887.889999999999999876 PP

  == domain 2    score: 60.7 bits;  conditional E-value: 1.2e-19
   TIGR02287   7 ltpvvheeayvhpsavligdvivgkrvyvgplaslrgdfgrivlkeganvqdtcvmh.......gfpgqdtvveenghvghgailhgcrvgrnalvgmnavvmdgavigessivaasafvkagleiaaqvlvvgspakvvrelseqelawkkegtreyqdlaarslqt 167
                  +p v + a++ p+a +ig+v + +r+ +   a +rgd  +i +   + + d  v+        gf    t +++  ++g g +l +c++   + +g   +v +ga i   +++   + v  g+ ++a  + +g pa  vr+ls++e++   e ++e  dlaa+ l+ 
  MMETSP1137-20121227|8464_1  70 QRPRVAQGAFIAPNAAVIGNVDIEPRTSIWYGAVIRGDQSNIFIGGESSIGDRSVVQsstvnptGF-SARTCIGDWVKIGQGCVLRACTIEDYCQIGDGCIVQEGALIESGAMLEPGSVVPQGARVPAGEVYAGNPATFVRKLSKEEIEEFGEYAEEVCDLAAKHLDE 236
                 6899***************************************99888888888876222222244.356899999************************************************************************99888888888888887665 PP

>> TIGR03570  NeuD_NnaD: sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.2   9.8e-07   0.00027     138     190 ..      74     129 ..      66     136 .. 0.87
   2 !   30.9   1.5   1.5e-10   4.1e-08     114     201 ..     113     205 ..     110     206 .. 0.85

  Alignments for each domain:
  == domain 1    score: 18.4 bits;  conditional E-value: 9.8e-07
   TIGR03570 138 igdfvhiapgatlsGgvkigegvfiGagAtviq...gvtIgkgavvGaGavVvkdi 190
                 + + + iap+a++ G+v i+ ++ i  gA+++    ++ Ig ++ +G  +vV +++
  MMETSP1137-20121227|8464_1  74 VAQGAFIAPNAAVIGNVDIEPRTSIWYGAVIRGdqsNIFIGGESSIGDRSVVQSST 129
                 777889*************************95333788*************8775 PP

  == domain 2    score: 30.9 bits;  conditional E-value: 1.5e-10
   TIGR03570 114 inadvrigdnviintgav....veHdceigdfvhiapgatlsGgvkigegvfiGagAtviqgvtIgkgavvGaGavVvk..dipenavvvGvPa 201
                 i  +++igd  ++++++v     +  + igd v+i  g++l   ++i++ + iG g++v +g  I++ga+   G+vV +   +p+++v++G+Pa
  MMETSP1137-20121227|8464_1 113 IGGESSIGDRSVVQSSTVnptgFSARTCIGDWVKIGQGCVLR-ACTIEDYCQIGDGCIVQEGALIESGAMLEPGSVVPQgaRVPAGEVYAGNPA 205
                 556677888888887765444478999***********9886.79********************************863379**********9 PP

>> TIGR01853  lipid_A_lpxD: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.1   0.0   5.3e-05     0.014      80     156 ..      63     126 ..      45     132 .. 0.48
   2 !   22.4   0.2     4e-08   1.1e-05     115     173 ..     137     194 ..     133     203 .. 0.87

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 5.3e-05
   TIGR01853  80 kvaelfkpkakreagilptavveesakleeeveigpnvviganveiGenvkIgpgvvi...gddvkigdesviyanvviy 156
                 +v++l++                +  ++++++ i+pn+ +  nv i  ++ I  g+vi   ++++ ig es i  + v++
  MMETSP1137-20121227|8464_1  63 AVMNLYD----------------QRPRVAQGAFIAPNAAVIGNVDIEPRTSIWYGAVIrgdQSNIFIGGESSIGDRSVVQ 126
                 4444444................444445555555555555555555555555555552222233344444444444443 PP

  == domain 2    score: 22.4 bits;  conditional E-value: 4e-08
   TIGR01853 115 pnvviganveiGenvkIgpgvvigddvkigdesviyanvviyeevklgknviiqagavi 173
                 + + ig+ v+iG+++++   ++i+d+++igd++++  ++ i + ++l+   ++ +ga++
  MMETSP1137-20121227|8464_1 137 ARTCIGDWVKIGQGCVLR-ACTIEDYCQIGDGCIVQEGALIESGAMLEPGSVVPQGARV 194
                 56789*********9876.599********************99999988888888776 PP

>> TIGR03532  DapD_Ac: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.0   0.1   1.7e-11   4.7e-09      86     217 ..      77     214 ..      39     226 .. 0.82

  Alignments for each domain:
  == domain 1    score: 34.0 bits;  conditional E-value: 1.7e-11
   TIGR03532  86 nariepGaiirdkvaigdnavimmGavi.....n..iGae..iGegtmidmnav....lGgraivGknvhiGaGavlaGvieppsakpvvieddvliGanavileGvkvGkGavvaaGaivie..dvpentvvaGvpakvikevdek 217
                  a i p a +  +v i+  + i  Gavi     n  iG e  iG+ ++++ ++v    + +r+ +G  v+iG G+vl           ++ied   iG   ++ eG  + +Ga++  G++v +   vp+  v aG pa  +++++++
  MMETSP1137-20121227|8464_1  77 GAFIAPNAAVIGNVDIEPRTSIWYGAVIrgdqsNifIGGEssIGDRSVVQSSTVnptgFSARTCIGDWVKIGQGCVLR---------ACTIEDYCQIGDGCIVQEGALIESGAMLEPGSVVPQgaRVPAGEVYAGNPATFVRKLSKE 214
                 57799999999999***********998444443336753349999999988875545679***************95.........5899999999999999999999999999999999873359**************999875 PP

>> TIGR02353  NRPS_term_dom: non-ribosomal peptide synthetase terminal domain of unknown function
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.5   0.1   1.6e-09   4.3e-07     646     695 .]     156     205 ..      98     205 .. 0.93

  Alignments for each domain:
  == domain 1    score: 26.5 bits;  conditional E-value: 1.6e-09
   TIGR02353 646 vtigdgatlgpsaivlygavvgedavlgpdslvMkgeevpahtrWeGnPa 695
                  ti d + +g++ iv  ga+++ +a l+p s+v +g +vpa   ++GnPa
  MMETSP1137-20121227|8464_1 156 CTIEDYCQIGDGCIVQEGALIESGAMLEPGSVVPQGARVPAGEVYAGNPA 205
                 689999999****************************************7 PP

>> TIGR03308  phn_thr-fam: phosphonate metabolim protein, transferase hexapeptide repeat family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.1   0.0    0.0017      0.48      10      43 ..     129     162 ..     120     164 .. 0.83
   2 !   16.4   0.0   4.8e-06    0.0013     117     167 ..     164     216 ..     162     224 .. 0.89

  Alignments for each domain:
  == domain 1    score: 8.1 bits;  conditional E-value: 0.0017
   TIGR03308  10 tihesaelkesklGrytevgertrleevalddys 43 
                 t++++     + +G ++++g+ ++l+ ++++dy+
  MMETSP1137-20121227|8464_1 129 TVNPTGFSARTCIGDWVKIGQGCVLRACTIEDYC 162
                 6666666677889********************7 PP

  == domain 2    score: 16.4 bits;  conditional E-value: 4.8e-06
   TIGR03308 117 iGhGavilPgvtiGnGavvaagavvtk..dvasytivaGvpaklirrrfaeei 167
                 iG G ++  g  i  Ga++  g+vv +   v++  + aG+pa+ +r+   eei
  MMETSP1137-20121227|8464_1 164 IGDGCIVQEGALIESGAMLEPGSVVPQgaRVPAGEVYAGNPATFVRKLSKEEI 216
                 9************************873369***************9877777 PP

>> TIGR02091  glgC: glucose-1-phosphate adenylyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.1   0.0   2.7e-08   7.4e-06     262     363 ..      61     171 ..      55     172 .. 0.87

  Alignments for each domain:
  == domain 1    score: 23.1 bits;  conditional E-value: 2.7e-08
   TIGR02091 262 eepeldlydkkwpiytkeeqlppakfveskeakvkdslvaegcvisgatvenSvlgervriesesevedsvvlge...........vkigenakikkaiidknvrigegvkig 363
                 +++ ++lyd++ ++   +  +p a ++ + + +  +s +  g+vi+g   +n  +g ++ i++ s v++s v ++           vkig++++++ + i+  ++ig+g  ++
  MMETSP1137-20121227|8464_1  61 HRAVMNLYDQRPRVAQGAFIAPNAAVIGNVDIEPRTS-IWYGAVIRG-DQSNIFIGGESSIGDRSVVQSSTVNPTgfsartcigdwVKIGQGCVLRACTIEDYCQIGDGCIVQ 171
                 567899****999988888777777777766666666.578999999.778899999****************99*********************************98875 PP

>> TIGR03992  Arch_glmU: UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.4   5.3e-07   0.00015     238     324 ..      79     172 ..      61     182 .. 0.84
   2 !    5.9   0.0    0.0039       1.1     238     275 ..     157     194 ..     150     209 .. 0.78

  Alignments for each domain:
  == domain 1    score: 18.6 bits;  conditional E-value: 5.3e-07
   TIGR03992 238 eveenvklkgevvveegavvrsgayieG...pvligknaeiGPnayiRpatv....igedvkvgnaveiKnsiimeetkipHlsYvGDSviged 324
                  + +n+ + g+v +e  + +  ga+i G    ++ig +++iG  + + ++tv        + +g  v+i +  +++   i  +  +GD  i ++
  MMETSP1137-20121227|8464_1  79 FIAPNAAVIGNVDIEPRTSIWYGAVIRGdqsNIFIGGESSIGDRSVVQSSTVnptgFSARTCIGDWVKIGQGCVLRACTIEDYCQIGDGCIVQE 172
                 4899***********************9444589***************9984433566788**************************988765 PP

  == domain 2    score: 5.9 bits;  conditional E-value: 0.0039
   TIGR03992 238 eveenvklkgevvveegavvrsgayieGpvligknaei 275
                 ++e+ +++    +v+ega+++sga++e   ++ ++a++
  MMETSP1137-20121227|8464_1 157 TIEDYCQIGDGCIVQEGALIESGAMLEPGSVVPQGARV 194
                 67888888888888888888888888877777776665 PP

>> TIGR01852  lipid_A_lpxA: acyl-[acyl-carrier-protein]-UDP-N-acetylglucosamine O-acyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.3   0.0     0.002      0.56       2      57 ..      75     127 ..      74     133 .. 0.82
   2 !   10.1   0.0   0.00027     0.074      23      61 ..     139     176 ..     132     183 .. 0.86

  Alignments for each domain:
  == domain 1    score: 7.3 bits;  conditional E-value: 0.002
   TIGR01852   2 hptaiieegaelgedveigpfavvgkevkigegvelkshvviegattiGentkvfp 57 
                 ++ a i+++a +  +v i+p + +  +++i  +   +s++ i g+++iG+ + v +
  MMETSP1137-20121227|8464_1  75 AQGAFIAPNAAVIGNVDIEPRTSIWYGAVIRGD---QSNIFIGGESSIGDRSVVQS 127
                 567899999999999999999999999999888...68999999999999887765 PP

  == domain 2    score: 10.1 bits;  conditional E-value: 0.00027
   TIGR01852  23 avvgkevkigegvelkshvviegattiGentkvfpgAvi 61 
                 +++g+ vkig+g++l+  ++ie + +iG+++ v +gA i
  MMETSP1137-20121227|8464_1 139 TCIGDWVKIGQGCVLR-ACTIEDYCQIGDGCIVQEGALI 176
                 5789999999999886.5899999999999999999988 PP

>> TIGR01173  glmU: UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.2   0.0    0.0062       1.7     253     300 ..      81     130 ..      61     134 .. 0.53
   2 !   12.3   0.0   4.4e-05     0.012     278     325 ..     136     184 ..     132     203 .. 0.72

  Alignments for each domain:
  == domain 1    score: 5.2 bits;  conditional E-value: 0.0062
   TIGR01173 253 dPasvllekdveigqdvviepnvileg...kvkigedvviGagsvikdsai 300
                  P+  ++ ++v i+  + i  +++++g   ++ ig ++ iG  sv++ s++
  MMETSP1137-20121227|8464_1  81 APNAAVI-GNVDIEPRTSIWYGAVIRGdqsNIFIGGESSIGDRSVVQSSTV 130
                 3433333.4566666666666666666222234455555555555444444 PP

  == domain 2    score: 12.3 bits;  conditional E-value: 4.4e-05
   TIGR01173 278 egkvkigedvviGagsvikdsaikenakikaysvlek.seigegasvGP 325
                 + ++ ig+ v+iG+g+v++ ++i++ ++i + + +++ + i++ga + P
  MMETSP1137-20121227|8464_1 136 SARTCIGDWVKIGQGCVLRACTIEDYCQIGDGCIVQEgALIESGAMLEP 184
                 5678999**********************97777654133444444444 PP

>> TIGR01172  cysE: serine O-acetyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.2   2.8e-06   0.00078      34     148 ..      61     172 ..      58     205 .. 0.86

  Alignments for each domain:
  == domain 1    score: 17.4 bits;  conditional E-value: 2.8e-06
   TIGR01172  34 yrlahalykrklkll.arllselvrvltgvdihPaakigrgvliD.hatGvviGetavigddvsiyqgvtLGgtgkekgkRhPtvkegvvigagakvLGnievgenakiGansvvlk 148
                 +r    ly ++ +++ + +++  + v+ +vdi P  +i  g +i      + iG  ++igd  s+ q+ t+  tg   + R   +++ v ig g  vL + ++ +  +iG + +v +
  MMETSP1137-20121227|8464_1  61 HRAVMNLYDQRPRVAqGAFIAPNAAVIGNVDIEPRTSIWYGAVIRgDQSNIFIGGESSIGDR-SVVQSSTVNPTGF--SAR-TCIGDWVKIGQGC-VLRACTIEDYCQIGDGCIVQE 172
                 77788889888776525789999999*************99999614567999*99****87.6779999999994..444.57********996.99**************99965 PP

>> TIGR01208  rmlA_long: glucose-1-phosphate thymidylyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.7   0.5   3.3e-05    0.0091     264     314 ..     137     188 ..      62     208 .. 0.77

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 3.3e-05
   TIGR01208 264 vnsvirGPaviGedviiensyigpytsigegvvikdaeveks.ivldesvie 314
                  ++ i   + iG+ ++++ + i+ y  ig+g +++++ + +s  +l+  +++
  MMETSP1137-20121227|8464_1 137 ARTCIGDWVKIGQGCVLRACTIEDYCQIGDGCIVQEGALIESgAMLEPGSVV 188
                 4556666788999999999999999999999999987765441455544444 PP

>> TIGR03991  alt_bact_glmU: UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.5   0.2   0.00041      0.11     204     280 ..      74     149 ..      43     153 .. 0.79
   2 ?    4.6   0.0     0.013       3.5     204     236 ..     164     196 ..     157     205 .. 0.75

  Alignments for each domain:
  == domain 1    score: 9.5 bits;  conditional E-value: 0.00041
   TIGR03991 204 igkdakveefsflegpvyigegarvkagarikggts...iGttckiGGEveasviedysNKqHdGFLGhSvlgsWvNlGA 280
                 + ++a + + + + g+v i + + +  ga i+g+ s   iG  + iG   + sv++  s  +  GF     +g+Wv +G 
  MMETSP1137-20121227|8464_1  74 VAQGAFIAPNAAVIGNVDIEPRTSIWYGAVIRGDQSnifIGGESSIG---DRSVVQS-STVNPTGFSARTCIGDWVKIGQ 149
                 678999999****************9999999876433377777777...5788776.4456799999999999999996 PP

  == domain 2    score: 4.6 bits;  conditional E-value: 0.013
   TIGR03991 204 igkdakveefsflegpvyigegarvkagarikg 236
                 ig++  v+e++++e  +++ +g+ v +gar+ +
  MMETSP1137-20121227|8464_1 164 IGDGCIVQEGALIESGAMLEPGSVVPQGARVPA 196
                 788888888888888888888888888888843 PP

>> TIGR04008  WcaF: colanic acid biosynthesis acetyltransferase WcaF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   0.1   3.6e-05    0.0097      78     177 ..     103     210 ..      59     213 .. 0.75

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 3.6e-05
   TIGR04008  78 awvgddavlytlgeitigahsvisqksylctg..shdyaskhfdina....tpivigekcwlatdvfvapgvtigdgtvvgarssvfk..slpankicrgnpavvvre 177
                    gd+++++  ge +ig +sv+   +   tg  +   + + ++i          i + c +    +v  g  i +g+++   s v +   +pa ++  gnpa  vr+
  MMETSP1137-20121227|8464_1 103 VIRGDQSNIFIGGESSIGDRSVVQSSTVNPTGfsARTCIGDWVKIGQgcvlRACTIEDYCQIGDGCIVQEGALIESGAMLEPGSVVPQgaRVPAGEVYAGNPATFVRK 210
                 3459*******************999988888323345566777765111145579999999999*************99999988762269************9996 PP

>> TIGR00965  dapD: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.1      0.32        87     177     199 ..     108     130 ..      32     148 .. 0.62
   2 ?    9.3   2.0   0.00054      0.15     173     224 ..     155     203 ..      72     235 .. 0.89

  Alignments for each domain:
  == domain 1    score: 0.3 bits;  conditional E-value: 0.32
   TIGR00965 177 edncfigarseivegviveegsv 199
                 + n fig  s i +  +v+  +v
  MMETSP1137-20121227|8464_1 108 QSNIFIGGESSIGDRSVVQSSTV 130
                 23666666666666666665555 PP

  == domain 2    score: 9.3 bits;  conditional E-value: 0.00054
   TIGR00965 173 pviiedncfigarseivegviveegsvismgvfigqstkivdretgeiiygr 224
                    ied c ig    + eg ++e g+++  g  + q +++    +ge++ g 
  MMETSP1137-20121227|8464_1 155 ACTIEDYCQIGDGCIVQEGALIESGAMLEPGSVVPQGARVP---AGEVYAGN 203
                 4679***************************9999999984...67777764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (255 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       108  (0.0263286); expected 82.0 (0.02)
Passed bias filter:                      104  (0.0253535); expected 82.0 (0.02)
Passed Vit filter:                        21  (0.00511945); expected 4.1 (0.001)
Passed Fwd filter:                        15  (0.00365675); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.41u 0.14s 00:00:00.55 Elapsed: 00:00:00.44
# Mc/sec: 764.94
//
Query:       MMETSP1137-20121227|8465_1  [L=283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.2e-85  281.9   0.1    6.8e-85  281.5   0.1    1.1  1  TIGR00493 clpP: ATP-dependent Clp protease, proteolytic subunit ClpP
     0.0066   13.9   0.0       0.01   13.3   0.0    1.2  1  TIGR00706 SppA_dom: signal peptide peptidase SppA, 36K type


Domain annotation for each model (and alignments):
>> TIGR00493  clpP: ATP-dependent Clp protease, proteolytic subunit ClpP
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  281.5   0.1   3.3e-88   6.8e-85      12     191 ..      88     267 ..      82     268 .. 0.98

  Alignments for each domain:
  == domain 1    score: 281.5 bits;  conditional E-value: 3.3e-88
   TIGR00493  12 srgerafdiysrllkeriillsgevedevansivaqllfleaedpekdislyinspGGsitaGlaiydtmqfikpdvsticiGlaasmGafllaaGakGkrlalpnsrimihqplGGaqGqasdieiqakeilklkkklnellaektGqslekiekdterdfflsaeeakeyGlidkvlt 191
                 + g+   d+ srll++ri+ll+++v+devan++vaqll+l+ ed+e+di++yinspGGs++aG+ai+dtmq++  d++t+c+G aasmGafll aG+kGkr +lpnsrimihqplGGaqGqa+dieiqakeil ++++l e +a+ tGq+++kie+d +rdff++ eeak+yG+id+vl+
  MMETSP1137-20121227|8465_1  88 GAGDDKMDVISRLLRDRILLLGQQVDDEVANLLVAQLLYLANEDAERDITMYINSPGGSVSAGMAIFDTMQYVPCDMNTVCFGTAASMGAFLLGAGQKGKRRSLPNSRIMIHQPLGGAQGQAADIEIQAKEILXIRALLCEYIADYTGQPVDKIEEDCDRDFFMTPEEAKAYGIIDEVLV 267
                 5788999***************************************************************************************************************************************************************************96 PP

>> TIGR00706  SppA_dom: signal peptide peptidase SppA, 36K type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   0.0   4.9e-06      0.01      28      83 ..     129     183 ..     107     187 .. 0.80

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 4.9e-06
   TIGR00706  28 ddksvkalvlkidSPGGtvvaseeiyeklkklkakkpvvasvgnvaaSGgyyiala 83 
                 +++  + + + i+SPGG+v+a   i+++++ +   +  v  +g+ a  G+++++++
  MMETSP1137-20121227|8465_1 129 NEDAERDITMYINSPGGSVSAGMAIFDTMQYVPCDMNTV-CFGTAASMGAFLLGAG 183
                 55666789999*******************999877765.5788888899887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (283 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        72  (0.0175524); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.23u 0.14s 00:00:00.37 Elapsed: 00:00:00.37
# Mc/sec: 1009.54
//
Query:       MMETSP1137-20121227|8466_1  [L=210]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (210 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       115  (0.0280351); expected 82.0 (0.02)
Passed bias filter:                       99  (0.0241346); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.13s 00:00:00.32 Elapsed: 00:00:00.36
# Mc/sec: 769.94
//
Query:       MMETSP1137-20121227|8467_1  [L=259]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (259 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       107  (0.0260848); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.17s 00:00:00.38 Elapsed: 00:00:00.28
# Mc/sec: 1220.90
//
Query:       MMETSP1137-20121227|8468_1  [L=340]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (340 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        52  (0.0126767); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.15s 00:00:00.39 Elapsed: 00:00:00.39
# Mc/sec: 1150.67
//
Query:       MMETSP1137-20121227|8469_1  [L=369]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-09   35.4   0.0      1e-06   26.1   0.0    2.2  2  TIGR03162 ribazole_cobC: alpha-ribazole phosphatase
    1.3e-06   25.9   0.1    2.4e-06   25.0   0.0    1.4  1  TIGR03848 MSMEG_4193: probable phosphomutase, MSMEG_4193 family
    0.00013   19.7   0.0    0.00025   18.7   0.0    1.5  1  TIGR00249 sixA: phosphohistidine phosphatase SixA


Domain annotation for each model (and alignments):
>> TIGR03162  ribazole_cobC: alpha-ribazole phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.1   0.0   7.7e-10     1e-06       1      79 [.     159     253 ..     159     262 .. 0.81
   2 !    7.3   0.0   0.00047      0.64     111     175 ..     301     364 ..     283     365 .. 0.75

  Alignments for each domain:
  == domain 1    score: 26.1 bits;  conditional E-value: 7.7e-10
   TIGR03162   1 lyLiRHge.....vevnk..gkcYGqt.DvpLaekgeeqaaalrekl........edvkfdavvsSplsRcrelAellaeklklpiekddrLrEm 79 
                 l+LiRHge     +e ++  ++c G+t D pL+++g++qa++++e l         d  +  v+sSpl R+ ++A ++a++l++p+++ + L E 
  MMETSP1137-20121227|8469_1 159 LVLIRHGErvdetTEKHEwrRNCGGRTwDPPLTKNGARQARKAAEXLialgygrqGDDGVAVVLSSPLLRTVQTASHIASALDIPVQTLPGLAEC 253
                 689***9743222222221133445545******************9999*999888889999*************************9999996 PP

  == domain 2    score: 7.3 bits;  conditional E-value: 0.00047
   TIGR03162 111 vpgGEsvadfsqRveefleelakeekenvlivtHgGvirallahllgl....pleqllsieveygsitl 175
                 +pg E +++fs+ ++    +la+  +e +livtH   ir l+a + ++    p+ ++ ++e+++g +tl
  MMETSP1137-20121227|8469_1 301 APGEERFETFSTCIT----RLAAV-SELLLIVTHREGIRELCAMAGQAacrtPYCAIAKFEFDQGRWTL 364
                 555566666654333....33333.5669******9999999999888777788899999999999987 PP

>> TIGR03848  MSMEG_4193: probable phosphomutase, MSMEG_4193 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.0   0.0   1.8e-09   2.4e-06       2      83 ..     159     254 ..     158     258 .. 0.79

  Alignments for each domain:
  == domain 1    score: 25.0 bits;  conditional E-value: 1.8e-09
   TIGR03848   2 vllvrhgrstanta......ktLaGrtpGveLderGreqaaalaerladl........piaaivssPlercretveaiaearglevavderltevd 83 
                 ++l+rhg   ++t+      +   Grt    L+++G++qa+++ae l +l         +a ++ssPl r+ +t+++ia+a+ ++v++ + l+e+ 
  MMETSP1137-20121227|8469_1 159 LVLIRHGERVDETTekhewrRNCGGRTWDPPLTKNGARQARKAAEXLIALgygrqgddGVAVVLSSPLLRTVQTASHIASALDIPVQTLPGLAECA 254
                 799****776665511112135678999999*************9988773333333358999*******************************95 PP

>> TIGR00249  sixA: phosphohistidine phosphatase SixA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.0   1.9e-07   0.00025      21      82 ..     188     254 ..     157     263 .. 0.77

  Alignments for each domain:
  == domain 1    score: 18.7 bits;  conditional E-value: 1.9e-07
   TIGR00249  21 RqLtkkGkdeaervaqwLkkag......veldrilvSplvRAeqtaeivadaldesklevlegltPlg 82 
                  +Ltk+G  +a++ a+ L + g        +  +l Spl+R  qta ++a ald   +++l+gl+ ++
  MMETSP1137-20121227|8469_1 188 PPLTKNGARQARKAAEXLIALGygrqgdDGVAVVLSSPLLRTVQTASHIASALD-IPVQTLPGLAECA 254
                 47****************999988888888999********************9.7788999998776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (369 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        83  (0.020234); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.28u 0.11s 00:00:00.39 Elapsed: 00:00:00.63
# Mc/sec: 773.08
//
Query:       MMETSP1137-20121227|8470_1  [L=367]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.3e-37  125.1   0.0    1.5e-36  123.8   0.0    1.6  1  TIGR02396 diverge_rpsU: rpsU-divergently transcribed protein


Domain annotation for each model (and alignments):
>> TIGR02396  diverge_rpsU: rpsU-divergently transcribed protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  123.8   0.0   3.8e-40   1.5e-36       2     176 ..      66     246 ..      65     253 .. 0.93

  Alignments for each domain:
  == domain 1    score: 123.8 bits;  conditional E-value: 3.8e-40
   TIGR02396   2 aklldallelvpflGwteeallkaaeelglsdilakllpeegladliefferkldaallealkake.lledlkvrekielavrlrlkmvkpiiehlkqalallakpknlaeslrlllelvDeIwylagDkSs......DfnwYtKRalLsavysstelfmiqDkSedfedTwkFldsrienv 176
                 ++llda+l+ vp++Gwt  al++aa  +gls++ +++lp++++ +l+ +f+ ++da+l ++l +k+ ++e l+v+++++la ++rl m +p++  ++qalal a+p+n+ esl+ + +l++ ++ + g  ++        +   K a+L+avy ++el+m++DkS++f+dTw F+++ + ++
  MMETSP1137-20121227|8470_1  66 VRLLDAALNKVPEHGWTVGALSAAAVSIGLSPAAHGMLPRGPI-ELVRHFSSACDAKLQAELVSKAdEFESLEVKNRLVLAMQTRLRMLEPYVATWPQALALKAQPTNVSESLSDAHALASLLLDACGAGARapiapaAIDAHLKCASLAAVYGAAELYMLTDKSPGFSDTWLFVEREVGAL 246
                 79****************************************9.8****************9999889********************************************************9999887622222257999*********************************998766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (367 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        90  (0.0219405); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.29u 0.13s 00:00:00.42 Elapsed: 00:00:00.40
# Mc/sec: 1211.00
//
Query:       MMETSP1137-20121227|8471_1  [L=108]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (108 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        69  (0.0168211); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.37
# Mc/sec: 385.27
//
Query:       MMETSP1137-20121227|8472_1  [L=306]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (306 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       184  (0.0448562); expected 82.0 (0.02)
Passed bias filter:                       98  (0.0238908); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.14s 00:00:00.39 Elapsed: 00:00:00.39
# Mc/sec: 1035.61
//
Query:       MMETSP1137-20121227|8473_1  [L=593]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        3.6    2.9   7.5        5.4    2.3   5.2    1.2  1  TIGR00927 2A1904: K+-dependent Na+/Ca+ exchanger


Domain annotation for each model (and alignments):
>> TIGR00927  2A1904: K+-dependent Na+/Ca+ exchanger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   5.2    0.0013       5.4     962     999 ..     444     482 ..     397     493 .. 0.50

  Alignments for each domain:
  == domain 1    score: 2.3 bits;  conditional E-value: 0.0013
   TIGR00927 962 ekGvdgeggsdGGdseeeeeeeeeeeeeeee.eeeeeee 999
                  +  d+ ggs GG  ++e++  e e +  +e e+e e+e
  MMETSP1137-20121227|8473_1 444 ADDRDDHGGSGGGGDDDEDDGGESESDSGDEyEHETEQE 482
                 222334444433333333333332222222202222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (593 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       122  (0.0297416); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.12s 00:00:00.54 Elapsed: 00:00:00.55
# Mc/sec: 1423.08
//
Query:       MMETSP1137-20121227|8474_1  [L=36]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (36 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        27  (0.00658216); expected 82.0 (0.02)
Passed bias filter:                       26  (0.00633837); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.16s 00:00:00.26 Elapsed: 00:00:00.26
# Mc/sec: 182.75
//
Query:       MMETSP1137-20121227|8475_1  [L=319]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (319 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       127  (0.0309605); expected 82.0 (0.02)
Passed bias filter:                      113  (0.0275475); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.18s 00:00:00.46 Elapsed: 00:00:00.41
# Mc/sec: 1026.94
//
Query:       MMETSP1137-20121227|8476_1  [L=567]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.7e-34  115.8   0.0      2e-28   97.4   0.0    2.1  2  TIGR02967 guan_deamin: guanine deaminase
    5.6e-25   85.9   0.0    5.5e-15   53.0   0.0    2.8  2  TIGR03314 Se_ssnA: putative selenium metabolism protein SsnA
    3.9e-17   59.9   0.1    4.2e-09   33.5   0.0    2.2  2  TIGR01224 hutI: imidazolonepropionase
    1.3e-14   51.6   1.3    7.4e-11   39.2   0.8    2.1  2  TIGR02022 hutF: formiminoglutamate deiminase
    1.2e-08   32.2   0.0    3.5e-07   27.4   0.0    2.6  3  TIGR02033 D-hydantoinase: dihydropyrimidinase
    2.5e-06   24.4   0.0    3.1e-05   20.8   0.0    2.5  3  TIGR03178 allantoinase: allantoinase
    1.1e-05   22.4   0.0     0.0016   15.3   0.0    2.5  3  TIGR02318 phosphono_phnM: phosphonate metabolism protein PhnM
    0.00039   17.3   0.0      0.017   11.9   0.0    2.1  2  TIGR00857 pyrC_multi: dihydroorotase, multifunctional complex type
    0.00098   15.5   0.0     0.0015   14.9   0.0    1.1  1  TIGR01178 ade: adenine deaminase
      0.004   13.3   0.0      0.023   10.7   0.0    1.9  2  TIGR03121 one_C_dehyd_A: formylmethanofuran dehydrogenase subunit A
  ------ inclusion threshold ------
      0.027   11.3   0.0       0.13    9.0   0.0    1.9  2  TIGR00221 nagA: N-acetylglucosamine-6-phosphate deacetylase
      0.054   10.0   0.0        5.6    3.4   0.0    2.8  3  TIGR01792 urease_alph: urease, alpha subunit
      0.066   10.1   0.0       0.51    7.1   0.0    2.0  2  TIGR03583 EF_0837: putative amidohydrolase, EF_0837/AHA_3915 family


Domain annotation for each model (and alignments):
>> TIGR02967  guan_deamin: guanine deaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0   2.6e-06   0.00083       9      72 ..      40     102 ..      35     109 .. 0.82
   2 !   97.4   0.0   6.2e-31     2e-28     159     367 ..     237     451 ..     220     457 .. 0.89

  Alignments for each domain:
  == domain 1    score: 16.3 bits;  conditional E-value: 2.6e-06
   TIGR02967   9 lvvenGkieavgeyaelkeelseevevedlrkkliipGliDtHvHypQlevia.slgeqLleWLe 72 
                 +++++G+i++++e ++lk+  +e v+  d+++++++pG++  H H  Q  + +     +L+ W+ 
  MMETSP1137-20121227|8476_1  40 VLLQDGVIKKLAESNTLKA--KEGVQTLDCTERMLLPGFVNAHTHSVQQWTRGlIKPLPLELWVM 102
                 67899*****999988875..6789999*****************99987777555567777765 PP

  == domain 2    score: 97.4 bits;  conditional E-value: 6.2e-31
   TIGR02967 159 kelierwhg.kgrlkyavtPRFaptsseeqlealgelakeyPdvyvqtHlsEnkdEiawvkelypeakdyldvydkfglltrrsvlaHcvhlsdeelkllaetgaaiafCPtSNlflgsglfdlkkaeekevkvglgtD.vggGtsfslLqtlreaykvsqlq.....gkrlsaveafylaTlggakaldlddkiGnlevgkeaDlvvldlaatpl 367
                 ++ +er+h+  + ++ ++ P  a ++se+ l+ + +l ++y ++  +tHl E++    ++k+  p+ ++  +  +   l +r +  aH+++l+d+e+ l+ae ga+ ++ P+SNl lgsg+++l+k+++k+v+v++g D  ++G    +L++++ a     +              a+ la  +g +a+++ ++ G++ +g+ aDl++ dl+a +l
  MMETSP1137-20121227|8476_1 237 EAAVERFHDpANGIEIVIGPATAYSASEALLRGAAALRRKY-NLCGHTHLLETRAQALMAKQFLPSGSAVRHLHETGFLQGRGTSCAHTIWLEDDEMALMAEAGASCVHNPLSNLRLGSGVMPLDKLLDKGVNVAMGCDgAASGDGQDILEAIKLATTLPCVLsaeyrRWPAARRAALTLAAKNGYQAVGMGGQAGEIVEGACADLTLWDLTALSL 451
                 5668888886678999*************************.************************999988888888888999*******************************************************445699*********99987655533333444556789*********************************999765 PP

>> TIGR03314  Se_ssnA: putative selenium metabolism protein SsnA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.8   0.0   3.8e-10   1.2e-07      20     155 ..      37     174 ..      21     181 .. 0.78
   2 !   53.0   0.0   1.7e-17   5.5e-15     192     380 ..     253     448 ..     239     465 .. 0.82

  Alignments for each domain:
  == domain 1    score: 28.8 bits;  conditional E-value: 3.8e-10
   TIGR03314  20 nvdiaidgdvivevGsteelkakypeaefkdakGklvmPGlvnthnhlystlarGlaadiapskdfidilknlWWrldrald......ledvyysglvasldaiksGvttvldhhaspaaikGslsklakaaeelGlrtmlc 155
                  +d+ +++ vi+++ ++++lkak +  +  d   ++++PG+vn+h h     +rGl +  +    +++ +++   r   a           +  s+l + l+++ sG+ttvldh    +     l  +a+a++ lG+r+ l+
  MMETSP1137-20121227|8476_1  37 RADVLLQDGVIKKLAESNTLKAK-EGVQTLDCTERMLLPGFVNAHTHSVQQWTRGLIKPLPLELWVMQNIRHEP-RGAAAXXaxxxxpSAVLGLSALHCGLESLLSGCTTVLDHIMIRNL--DDLAAVAQAYKALGVRAFLA 174
                 568899999***********998.567889**************************987766666666555443.32222220001112345689999***************9877664..68**************9886 PP

  == domain 2    score: 53.0 bits;  conditional E-value: 1.7e-17
   TIGR03314 192 hiGlhasltvsdaglellreavkatgrGlhihvaedledvedskkky.Gkeiverlaelglldek.tlvahciylsdeeiellkekdtlvvhnaesnmgnavGvnpvlkelkegillalGtdGi....tsdlleelkvanvkhkdaggdltaaWaeifakll..ennnkllerffkaklGvleagakadliivdyna 380
                  iG  +++  s+a l   +   ++ +   h h+ e ++    +k+     + v  l+e+g l+ + t  ah+i+l d+e++l+ e ++  vhn+ sn+    Gv p  k l +g+ +a+G dG     ++d+le +k+a  +    +++    W+     +l     n   +  ++ + G + +ga adl++ d +a
  MMETSP1137-20121227|8476_1 253 VIGPATAYSASEALLRGAAALRRKYNLCGHTHLLETRAQALMAKQFLpSGSAVRHLHETGFLQGRgTSCAHTIWLEDDEMALMAEAGASCVHNPLSNLRLGSGVMPLDKLLDKGVNVAMGCDGAasgdGQDILEAIKLATTLPCVLSAEY-RRWPAARRAALtlAAKNGYQAVGMGGQAGEIVEGACADLTLWDLTA 448
                 5666667777777777777777788888899999999988877776513467899*****997553999*****************************************************97333357***********999888888.89*9887665511566667788899*****************9887 PP

>> TIGR01224  hutI: imidazolonepropionase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.2   0.0   8.9e-09   2.8e-06       4      50 ..      38      84 ..      35      90 .. 0.92
   2 !   33.5   0.0   1.3e-11   4.2e-09     234     355 ..     318     448 ..     304     457 .. 0.82

  Alignments for each domain:
  == domain 1    score: 24.2 bits;  conditional E-value: 8.9e-09
   TIGR01224  4 aailveegkiaaigqkaalpgeeaakiidleGklvvPGlvDpHtHlv 50
                a +l+++g i+ +++ + l+++e+++++d++ ++ +PG+v +HtH v
  MMETSP1137-20121227|8476_1 38 ADVLLQDGVIKKLAESNTLKAKEGVQTLDCTERMLLPGFVNAHTHSV 84
                66899****************************************98 PP

  == domain 2    score: 33.5 bits;  conditional E-value: 1.3e-11
   TIGR01224 234 avsadHleeasdedikalaeagtvavlLPgtaflLreaapparklidekvivalatDlnP...gsspllslqlilslavtll...k...ltaeealaaatvnaAqalglgeekGtleeGkdadlvvlsaes 355
                 ++s  H + ++d++++ +aeag++ v  P   + L++   p +kl+d++v va++ D      g+  l++++l+  l ++l    +    +   al+ a  n  qa+g+g ++G++ eG  adl +++++ 
  MMETSP1137-20121227|8476_1 318 GTSCAHTIWLEDDEMALMAEAGASCVHNPLSNLRLGSGVMPLDKLLDKGVNVAMGCDGAAsgdGQDILEAIKLATTLPCVLSaeyRrwpAARRAALTLAAKNGYQAVGMGGQAGEIVEGACADLTLWDLTA 448
                 57999****************************************************654233788999999999999986411131112333455555556679**********************9876 PP

>> TIGR02022  hutF: formiminoglutamate deiminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.4   0.0   0.00013      0.04      39      68 ..      62      91 ..      21      95 .. 0.69
   2 !   39.2   0.8   2.4e-13   7.4e-11     254     453 ..     305     508 ..     282     510 .. 0.83

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 0.00013
   TIGR02022 39 aedaerlsgvvlpglanlHsHAFqralaGl 68
                 ++ + +++++lpg++n+H H  q+  +Gl
  MMETSP1137-20121227|8476_1 62 VQTLDCTERMLLPGFVNAHTHSVQQWTRGL 91
                2345567899****************9998 PP

  == domain 2    score: 39.2 bits;  conditional E-value: 2.4e-13
   TIGR02022 254 vewLldhaevdar.wclvHatHltdeevkllaksgavaglCpttEanLgDGifpaadfvaaggrlgiGsDshvvvdvleElRllEygqRLrdraRnvlaageeasvaralydaAlaggaqalGlae..geleaGarADlltldledpslagakgd...alldsllfaaekaavrdvvvaGrkvvrdgrHaleeeierafakvlral 453
                 v+ L + + ++ r ++  H++ l+d+e++l+a++ga     p  +  Lg G++p ++++ +g ++++G D  ++ d  + l ++ ++  L     + + +   ++  ra +  A+ +g qa+G+    ge+  Ga ADl   dl   sl+ +++     +l sl  a++ ++++  +v G +   ++r  +     +a a +lral
  MMETSP1137-20121227|8476_1 305 VRHLHETGFLQGRgTSCAHTIWLEDDEMALMAEAGASCVHNPLSNLRLGSGVMPLDKLLDKGVNVAMGCDGAASGDGQDILEAIKLATTLPCVLSAEYRR--WPAARRAALTLAAKNGYQAVGMGGqaGEIVEGACADLTLWDLTALSLLPRTDPlslLVLGSLAHAGGRRRLCAPLVLGARAAGGRRRFAVRCRCQAAAVALRAL 508
                 667777777765526678**********************************************************999999998888888777777765..45777788899999999998775434*****************9999876654111578899999999999999999988877777776666667777777776 PP

>> TIGR02033  D-hydantoinase: dihydropyrimidinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.4   0.0   1.1e-09   3.5e-07      14      60 ..      35      83 ..      21      92 .. 0.86
   2 ?   -1.9   0.0      0.84   2.6e+02      81     110 ..     138     167 ..     135     170 .. 0.89
   3 ?    1.4   0.0      0.08        25     373     398 ..     422     447 ..     411     455 .. 0.79

  Alignments for each domain:
  == domain 1    score: 27.4 bits;  conditional E-value: 1.1e-09
   TIGR02033 14 kaeaDvliedekivavgan..llapdavkeidatGkyvlPGgiDvHtHl 60
                 ++aDvl++d++i+++ +   l+a++ v+++d+t +++lPG++++HtH 
  MMETSP1137-20121227|8476_1 35 YQRADVLLQDGVIKKLAESntLKAKEGVQTLDCTERMLLPGFVNAHTHS 83
                5789************976679999***********************5 PP

  == domain 2    score: -1.9 bits;  conditional E-value: 0.84
   TIGR02033  81 aagGtttiidfalqekgksLkealekykek 110
                 +  G tt++d+ + ++   L +++++yk++
  MMETSP1137-20121227|8476_1 138 LLSGCTTVLDHIMIRNLDDLAAVAQAYKAL 167
                 56899********99999******999975 PP

  == domain 3    score: 1.4 bits;  conditional E-value: 0.08
   TIGR02033 373 klfnlyPrkGtiavGsDaDivildPe 398
                 +  ++  + G i++G+ aD+ ++d +
  MMETSP1137-20121227|8476_1 422 QAVGMGGQAGEIVEGACADLTLWDLT 447
                 556777899**************966 PP

>> TIGR03178  allantoinase: allantoinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   0.0   9.7e-08   3.1e-05      10      59 ..      30      82 ..      20      87 .. 0.86
   2 ?   -0.7   0.0      0.32     1e+02     125     154 ..     150     180 ..     144     188 .. 0.82
   3 ?   -1.3   0.0      0.49   1.5e+02     351     385 ..     411     446 ..     389     454 .. 0.70

  Alignments for each domain:
  == domain 1    score: 20.8 bits;  conditional E-value: 9.7e-08
   TIGR03178 10 vleegereadvavkdgkiaeigqed...lkeaakiidvsgkvvlPGvvDahvh 59
                + + g ++adv ++dg i ++ +++   +ke+ +++d  ++++lPG v+ah+h
  MMETSP1137-20121227|8476_1 30 LADGGYQRADVLLQDGVIKKLAESNtlkAKEGVQTLDCTERMLLPGFVNAHTH 82
                457899***************999877788999******************** PP

  == domain 2    score: -0.7 bits;  conditional E-value: 0.32
   TIGR03178 125 vpenldelaelaea.GvvgfkaFlsksGvde 154
                 + +nld+la++a+a  ++g++aFl++   d+
  MMETSP1137-20121227|8476_1 150 MIRNLDDLAAVAQAyKALGVRAFLAPMLNDD 180
                 6689******9987469*******9876655 PP

  == domain 3    score: -1.3 bits;  conditional E-value: 0.49
   TIGR03178 351 kiarllaanpaklvgL.akkGriavGkDaDfvlvdk 385
                    +l a+n  + vg+  + G+i  G+ aD+ l d 
  MMETSP1137-20121227|8476_1 411 AALTLAAKNGYQAVGMgGQAGEIVEGACADLTLWDL 446
                 33456678889999998899**********998775 PP

>> TIGR02318  phosphono_phnM: phosphonate metabolism protein PhnM
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   4.9e-06    0.0016       2      60 ..      23      86 ..      22      96 .. 0.88
   2 ?   -3.2   0.0       2.1   6.5e+02      86     102 ..     140     156 ..     136     166 .. 0.74
   3 ?    4.3   0.0     0.011       3.4     324     355 ..     411     443 ..     393     452 .. 0.90

  Alignments for each domain:
  == domain 1    score: 15.3 bits;  conditional E-value: 4.9e-06
   TIGR02318  2 lsnarlvledevveg.svaiedgaIaeieeeesalaea....idleGdlllPGlidlHtDnler 60
                lsna + l+d  ++   v ++dg I++++e+++ +a+      d   ++llPG+++ Ht ++++
  MMETSP1137-20121227|8476_1 23 LSNALIPLADGGYQRaDVLLQDGVIKKLAESNTLKAKEgvqtLDCTERMLLPGFVNAHTHSVQQ 86
                78999999999999989*************9988776667779****************99876 PP

  == domain 2    score: -3.2 bits;  conditional E-value: 2.1
   TIGR02318  86 aGiTTvfdalalgdtek 102
                 +G TTv+d + +++ ++
  MMETSP1137-20121227|8476_1 140 SGCTTVLDHIMIRNLDD 156
                 799*****999986555 PP

  == domain 3    score: 4.3 bits;  conditional E-value: 0.011
   TIGR02318 324 eavklvtknpAkavgls.drGeiakGkrADlvl 355
                 +a+ l++kn  +avg+  + Gei +G  ADl l
  MMETSP1137-20121227|8476_1 411 AALTLAAKNGYQAVGMGgQAGEIVEGACADLTL 443
                 78999************9************976 PP

>> TIGR00857  pyrC_multi: dihydroorotase, multifunctional complex type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.9   0.0   5.5e-05     0.017       4      48 ..      36      83 ..      33      88 .. 0.84
   2 ?    3.3   0.0     0.023       7.2     312     371 ..     387     448 ..     384     456 .. 0.85

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 5.5e-05
   TIGR00857  4 veadilvedgkIkkie.klkikadaevi..dakgllvlPgliDlhvhl 48
                 +ad+l +dg Ikk++ ++ +ka++ v+  d +  ++lPg++ +h+h+
  MMETSP1137-20121227|8476_1 36 QRADVLLQDGVIKKLAeSNTLKAKEGVQtlDCTERMLLPGFVNAHTHS 83
                589************99778888877763367789************7 PP

  == domain 2    score: 3.3 bits;  conditional E-value: 0.023
   TIGR00857 312 ipgletvlplllqllvkg.lislkalvrvlsenParilglkekg.tleegepAdltvidlkk 371
                 +++l t lp++l +  +    + +a+++  ++n  +++g+  ++ ++ eg  Adlt+ dl +
  MMETSP1137-20121227|8476_1 387 AIKLATTLPCVLSAEYRRwPAARRAALTLAAKNGYQAVGMGGQAgEIVEGACADLTLWDLTA 448
                 57899999999998888867777888889999********98766**************975 PP

>> TIGR01178  ade: adenine deaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   4.6e-06    0.0015       9      58 ..      27      82 ..      20      86 .. 0.88

  Alignments for each domain:
  == domain 1    score: 14.9 bits;  conditional E-value: 4.6e-06
   TIGR01178  9 iiDvvnkeiikgdiaiaegviagvgkee......gvkvidakgkvvvPgfiDaHiH 58
                +i + +++  ++d+ +++gvi  + + +      gv+++d ++++++Pgf++aH+H
  MMETSP1137-20121227|8476_1 27 LIPLADGGYQRADVLLQDGVIKKLAESNtlkakeGVQTLDCTERMLLPGFVNAHTH 82
                567778888999*********9999888899999*********************9 PP

>> TIGR03121  one_C_dehyd_A: formylmethanofuran dehydrogenase subunit A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.7   0.0   7.3e-05     0.023      16      62 ..      33      83 ..      21      86 .. 0.76
   2 ?   -0.3   0.0      0.16        50     445     470 ..     422     448 ..     387     454 .. 0.86

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 7.3e-05
   TIGR03121 16 ikgevmdilikdGkiveevskee....kkakvidasgkvvmaGgvdlHsHi 62
                   + +d+l++dG i +  ++++    +  +++d + ++ ++G v+ H+H 
  MMETSP1137-20121227|8476_1 33 GGYQRADVLLQDGVIKKLAESNTlkakEGVQTLDCTERMLLPGFVNAHTHS 83
                455789*******8876655544322356789******************6 PP

  == domain 2    score: -0.3 bits;  conditional E-value: 0.16
   TIGR03121 445 kllglsdr.GhLgvGadadiavYdikp 470
                 +++g+  + G++ +Ga ad++++d++ 
  MMETSP1137-20121227|8476_1 422 QAVGMGGQaGEIVEGACADLTLWDLTA 448
                 678999888**************9875 PP

>> TIGR00221  nagA: N-acetylglucosamine-6-phosphate deacetylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   0.0   0.00041      0.13      21      65 ..      37      83 ..      18      88 .. 0.84
   2 ?   -0.8   0.0      0.38   1.2e+02     334     366 ..     412     444 ..     402     447 .. 0.88

  Alignments for each domain:
  == domain 1    score: 9.0 bits;  conditional E-value: 0.00041
   TIGR00221 21 dsavvindekikavvteaele..eeikeidlkgnvltpGliDvqlnG 65
                   v+++d++ik++  ++ l+  e++++ d    +l+pG+++ + + 
  MMETSP1137-20121227|8476_1 37 RADVLLQDGVIKKLAESNTLKakEGVQTLDCTERMLLPGFVNAHTHS 83
                5679*************99987799*******************986 PP

  == domain 2    score: -0.8 bits;  conditional E-value: 0.38
   TIGR00221 334 vvrisslnparalgiddrlGsvakGkdanLavl 366
                 ++ ++++n  +a+g+  + G + +G  a+L++ 
  MMETSP1137-20121227|8476_1 412 ALTLAAKNGYQAVGMGGQAGEIVEGACADLTLW 444
                 67788999999*******************975 PP

>> TIGR01792  urease_alph: urease, alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.0     0.018       5.6      57     110 ..       9      63 ..       3      72 .. 0.83
   2 ?   -1.4   0.0      0.49   1.5e+02     106     132 ..     247     273 ..     244     323 .. 0.86
   3 ?    2.6   0.0     0.029       9.3     415     443 ..     423     451 ..     409     469 .. 0.84

  Alignments for each domain:
  == domain 1    score: 3.4 bits;  conditional E-value: 0.018
   TIGR01792  57 atlkrddaevldlvitnalildy.tgiykadiGiknGkivaiGkaGnpdlmdgvd 110
                 a++k+ da+   ++++nali  +  g  +ad+ +++G i ++  +   + ++gv+
  MMETSP1137-20121227|8476_1   9 ASVKQTDAQPQTVLLSNALIPLAdGGYQRADVLLQDGVIKKLAESNTLKAKEGVQ 63 
                 6778889999999*******666155668*************9998888888876 PP

  == domain 2    score: -1.4 bits;  conditional E-value: 0.49
   TIGR01792 106 mdgvdlivGastevisgegkivtaGgl 132
                  +g+++++G +t  +++e ++  a  l
  MMETSP1137-20121227|8476_1 247 ANGIEIVIGPATAYSASEALLRGAAAL 273
                 5799**************999888765 PP

  == domain 3    score: 2.6 bits;  conditional E-value: 0.029
   TIGR01792 415 ahGisdlvGsievGkladlvlwepkffgv 443
                 a G++ + G+i +G  adl lw+   ++ 
  MMETSP1137-20121227|8476_1 423 AVGMGGQAGEIVEGACADLTLWDLTALSL 451
                 77999*****************9876665 PP

>> TIGR03583  EF_0837: putative amidohydrolase, EF_0837/AHA_3915 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   0.0    0.0016      0.51      15      62 ..      37      86 ..      30      90 .. 0.79
   2 ?    0.2   0.0      0.21        67     314     332 ..     429     447 ..     418     451 .. 0.89

  Alignments for each domain:
  == domain 1    score: 7.1 bits;  conditional E-value: 0.0016
   TIGR03583 15 lvdiviedkkiaevgeeiege...akkildlegevyvsaGWidlhvhcfek 62
                  d++++d+ i +++e+ + +   + ++ld +    + +G+++ h+h+ ++
  MMETSP1137-20121227|8476_1 37 RADVLLQDGVIKKLAESNTLKakeGVQTLDCTE-RMLLPGFVNAHTHSVQQ 86
                679999999998887766655334889999998.66789********9876 PP

  == domain 2    score: 0.2 bits;  conditional E-value: 0.21
   TIGR03583 314 ekGrleeGkdadLtlftvk 332
                 + G++ eG+ adLtl++++
  MMETSP1137-20121227|8476_1 429 QAGEIVEGACADLTLWDLT 447
                 6799***********9976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (567 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        91  (0.0221843); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                        13  (0.00316919); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.50u 0.19s 00:00:00.69 Elapsed: 00:00:00.47
# Mc/sec: 1592.29
//
Query:       MMETSP1137-20121227|8477_1  [L=133]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.023   11.8   0.1      0.036   11.2   0.1    1.2  1  TIGR01981 sufD: FeS assembly protein SufD
        0.2    8.2   8.6       0.27    7.7   6.0    1.2  1  TIGR02927 SucB_Actino: 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase
        1.6    7.0   9.6        3.1    6.1   6.7    1.5  1  TIGR02811 formate_TAT: formate dehydrogenase region TAT target


Domain annotation for each model (and alignments):
>> TIGR01981  sufD: FeS assembly protein SufD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.1   2.6e-05     0.036     203     225 ..      92     114 ..      88     115 .. 0.92

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 2.6e-05
   TIGR01981 203 sdkaradtkPeLeIdaddVkasH 225
                 s +a  +++P+L++ +d+V+a+H
  MMETSP1137-20121227|8477_1  92 SHQACRQSQPRLLCATDEVNAAH 114
                 6788899**************** PP

>> TIGR02927  SucB_Actino: 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   6.0    0.0002      0.27     309     349 ..      16      56 ..       1      63 [. 0.53

  Alignments for each domain:
  == domain 1    score: 7.7 bits;  conditional E-value: 0.0002
   TIGR02927 309 eakeaaaaeaaaaapaapaaakkapepekaklrGttqkvnr 349
                 +a++aaaa aaaaa+aa a   +a e+  a lrG  + + r
  MMETSP1137-20121227|8477_1  16 AAAAAAAAAAAAAAAAAFAFLAAADETSCASLRGARRAIVR 56 
                 22222222222222333333344577888999999887766 PP

>> TIGR02811  formate_TAT: formate dehydrogenase region TAT target
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   6.7    0.0022       3.1      11      39 ..      11      39 ..       4      53 .. 0.60

  Alignments for each domain:
  == domain 1    score: 6.1 bits;  conditional E-value: 0.0022
   TIGR02811 11 RRdLLkglavgaaagavaaatgrvasasa 39
                 RdL  ++a++aaa+a+aaa   +  a+a
  MMETSP1137-20121227|8477_1 11 MRDLAAAAAAAAAAAAAAAAAAFAFLAAA 39
                56666666666666555555554443333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (133 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       176  (0.0429059); expected 82.0 (0.02)
Passed bias filter:                      101  (0.0246221); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.18u 0.17s 00:00:00.35 Elapsed: 00:00:00.33
# Mc/sec: 531.96
//
Query:       MMETSP1137-20121227|8478_1  [L=448]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.5e-16   57.2   0.0      9e-16   56.5   0.0    1.3  1  TIGR01444 fkbM_fam: methyltransferase, FkbM family


Domain annotation for each model (and alignments):
>> TIGR01444  fkbM_fam: methyltransferase, FkbM family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.5   0.0   2.2e-19     9e-16       2     131 ..     208     350 ..     207     362 .. 0.79

  Alignments for each domain:
  == domain 1    score: 56.5 bits;  conditional E-value: 2.2e-19
   TIGR01444   2 viDiGAniGdvslvfaravaegrviafEPlpdllekleenvklnnlkn.....vkllnaAvgdregeleftvsddatgnsslaads....elaees....eieVevvtlddlveeag.....lekvdllKiDvEGaEleVLrglaetl 131
                 +iD GAniG  sl+++ a++   v+afEP   +l ++   ++  +++      ++l+++A+g+++   +++ + ++ g+s +  ++         +    + ++ v+ ldd++  +g     +  v+llK+DvEG+E+  Lrg+++ l
  MMETSP1137-20121227|8478_1 208 IIDAGANIGACSLHMLLATNA-AVVAFEPGAANLFHASMTFRMLPNNSsirsrITLYPLALGSENKSETLNAAIGNAGHSVVGKKPgafaP----RghepPETIVVRMLDDVLWPRGqrwmrPPTVGLLKLDVEGYECLALRGMRALL 350
                 89**************99996.*******998876666555443333334679*************9999999999999999999976542....2244666899999***996554445457889*****************86654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (448 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        66  (0.0160897); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.31u 0.10s 00:00:00.41 Elapsed: 00:00:00.53
# Mc/sec: 1115.68
//
Query:       MMETSP1137-20121227|8479_1  [L=480]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (480 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       106  (0.0258411); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.13s 00:00:00.44 Elapsed: 00:00:00.48
# Mc/sec: 1319.89
//
Query:       MMETSP1137-20121227|8480_1  [L=469]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (469 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       104  (0.0253535); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.16s 00:00:00.48 Elapsed: 00:00:00.49
# Mc/sec: 1263.32
//
Query:       MMETSP1137-20121227|8481_1  [L=201]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (201 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        58  (0.0141394); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.17s 00:00:00.36 Elapsed: 00:00:00.53
# Mc/sec: 500.56
//
Query:       MMETSP1137-20121227|8482_1  [L=166]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (166 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       108  (0.0263286); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.15s 00:00:00.32 Elapsed: 00:00:00.34
# Mc/sec: 644.42
//
Query:       MMETSP1137-20121227|8483_1  [L=205]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (205 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       110  (0.0268162); expected 82.0 (0.02)
Passed bias filter:                      104  (0.0253535); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.19s 00:00:00.38 Elapsed: 00:00:00.49
# Mc/sec: 552.20
//
Query:       MMETSP1137-20121227|8485_1  [L=145]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (145 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        86  (0.0209654); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.17s 00:00:00.32 Elapsed: 00:00:01.39
# Mc/sec: 137.69
//
Query:       MMETSP1137-20121227|8486_1  [L=72]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        86  (0.0209654); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.33
# Mc/sec: 287.98
//
Query:       MMETSP1137-20121227|8487_1  [L=283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (283 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       128  (0.0312043); expected 82.0 (0.02)
Passed bias filter:                      107  (0.0260848); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.18s 00:00:00.43 Elapsed: 00:00:00.57
# Mc/sec: 644.02
//
Query:       MMETSP1137-20121227|8489_1  [L=344]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.8e-12   43.5   0.1    8.7e-12   42.9   0.0    1.2  1  TIGR01262 maiA: maleylacetoacetate isomerase


Domain annotation for each model (and alignments):
>> TIGR01262  maiA: maleylacetoacetate isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.9   0.0   2.1e-15   8.7e-12       2      91 ..      35     125 ..      34     132 .. 0.86

  Alignments for each domain:
  == domain 1    score: 42.9 bits;  conditional E-value: 2.1e-15
   TIGR01262   2 lYsyfrSsasyRvRiaLaLkgidyesvpvnLlkdGeqkkeefkalNPqelvPtLkidegevltqSlAiieyLeetypepa..Llp.kdpakra 91 
                 lY + +S +s  vR+ L+  ++ y+s+ + L    e+ ++e+ ++NP + vP+L+i  g v+t+S  i++y++++y + +  Ll  +++ kr+
  MMETSP1137-20121227|8489_1  35 LYHFAQSICSRQVRMLLDELNVPYTSHHLALPL-YEHYEPEYVRINPRAVVPALVIX-GCVFTDSANILQYVDDHYGNWNalLLHeSEAVKRQ 125
                 9******************************99.5**********************.6*****************98665444423333444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (344 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        71  (0.0173086); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.26u 0.17s 00:00:00.43 Elapsed: 00:00:00.37
# Mc/sec: 1227.14
//
Query:       MMETSP1137-20121227|8490_1  [L=309]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.035   11.0   0.1      0.048   10.5   0.0    1.2  1  TIGR01392 homoserO_Ac_trn: homoserine O-acetyltransferase


Domain annotation for each model (and alignments):
>> TIGR01392  homoserO_Ac_trn: homoserine O-acetyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   1.2e-05     0.048     255     305 ..      61     111 ..      16     137 .. 0.78

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 1.2e-05
   TIGR01392 255 erFdAnsYllltkaldthdlargrrdslkealkkikapvlvvgiesDllft 305
                 ++ + + Y+ll ka+ +++ ++g++d lk+ l+++++p+ ++    D++ +
  MMETSP1137-20121227|8490_1  61 QKEHSEEYILLLKAVSQFQAGKGKDDFLKDCLASVTLPAELLHALRDWMAK 111
                 3457899********************************999999998755 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (309 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        82  (0.0199902); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.24u 0.14s 00:00:00.38 Elapsed: 00:00:00.37
# Mc/sec: 1102.29
//
Query:       MMETSP1137-20121227|8491_1  [L=278]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.6e-10   37.3   0.1    2.6e-09   35.3   0.1    1.9  1  TIGR02096 TIGR02096: conserved hypothetical protein
      0.001   16.9   0.0     0.0017   16.2   0.0    1.3  1  TIGR02246 TIGR02246: conserved hypothetical protein


Domain annotation for each model (and alignments):
>> TIGR02096  TIGR02096: conserved hypothetical protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.3   0.1   1.3e-12   2.6e-09       2      79 ..     141     218 ..     140     245 .. 0.89

  Alignments for each domain:
  == domain 1    score: 35.3 bits;  conditional E-value: 1.3e-12
   TIGR02096   2 elaqkwiealnsgdmdavlallaeDvlyddeagsrklktkdqlarflaelanalpdnevdvvrftaeegsavvaewtv 79 
                 + ++++ + +n++dm ++ +l++eDv y+d   ++k  +++ql+  l+++a+a pd++  vv+   +   ++ ++w v
  MMETSP1137-20121227|8491_1 141 QAVREFFQCWNERDMSKAAKLFSEDVSYEDTLYPEKFVGREQLVFHLNRVADAVPDSFRFVVDEVSASPDRAGVQWHV 218
                 77999*****************************************************99998888777788888765 PP

>> TIGR02246  TIGR02246: conserved hypothetical protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0   8.2e-07    0.0017      10      72 ..     143     204 ..     133     220 .. 0.80

  Alignments for each domain:
  == domain 1    score: 16.2 bits;  conditional E-value: 8.2e-07
   TIGR02246  10 varleaAwaagDaeafAnlFteDgvfv.tvpGqklkGreaIaaaleaflekpvkgtkvevdvie 72 
                 v++ ++ w+++D ++ A+lF eD+++  t+  +k  Gre+++++l+ ++   +    +  +v e
  MMETSP1137-20121227|8491_1 143 VREFFQCWNERDMSKAAKLFSEDVSYEdTLYPEKFVGREQLVFHLNRVADAVPDS--FRFVVDE 204
                 67899*********************724566799**********9999888874..5555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (278 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        57  (0.0138957); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.24u 0.13s 00:00:00.37 Elapsed: 00:00:00.51
# Mc/sec: 719.47
//
Query:       MMETSP1137-20121227|8492_1  [L=410]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (410 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        99  (0.0241346); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.18s 00:00:00.48 Elapsed: 00:00:00.47
# Mc/sec: 1151.39
//
Query:       MMETSP1137-20121227|8493_1  [L=343]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.1e-07   28.5   0.0    3.8e-07   27.7   0.0    1.3  1  TIGR00668 apaH: bis(5'-nucleosyl)-tetraphosphatase (symmetrical)
    4.5e-05   19.6   0.0    0.00012   18.2   0.0    1.6  1  TIGR04075 bacter_Pnkp: polynucleotide kinase-phosphatase


Domain annotation for each model (and alignments):
>> TIGR00668  apaH: bis(5'-nucleosyl)-tetraphosphatase (symmetrical)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.7   0.0   1.8e-10   3.8e-07       5     127 ..      86     205 ..      83     218 .. 0.75

  Alignments for each domain:
  == domain 1    score: 27.7 bits;  conditional E-value: 1.8e-10
   TIGR00668   5 ligdlhgcydelqlllervefdpakdtlyltgdlvargdkslevlryv....kslgdavrlvlgnhdlhllavalgikk.vkpkdrldalleapdadellnwlrrqpllvvdeekklvlahagispdw 127
                 ++gd+hg y +l  l+e+  f p  + l+l gd v rg++ le++ ++        +   l+ gnh+   +  + g     k +     +   + ++e+ n l   p+  v +e k+   hag+spd 
  MMETSP1137-20121227|8493_1  86 IVGDIHGQYHDLLRLFEHCGFPPDANYLFL-GDYVDRGKNGLECMCLLlaykIKYPENFFLLRGNHECASINRIYGFYDeCKRRY---NIKMWKKFQEVFNVL---PFAAVVDE-KIFCIHAGLSPDL 205
                 79***********************99998.9***********976541110445677888899**9999999998764034333...344567788888887...44444444.5667799999975 PP

>> TIGR04075  bacter_Pnkp: polynucleotide kinase-phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.0   5.8e-08   0.00012     177     263 ..      79     152 ..      53     162 .. 0.75

  Alignments for each domain:
  == domain 1    score: 18.2 bits;  conditional E-value: 5.8e-08
   TIGR04075 177 dekGPfdiiGdvhGCldeleelleklGyeveeeeegkavevthpegrkavflGdlvdrGpdspdvlrlv..msmvkagaalcvpGnhee 263
                 + + P  i+Gd+hG +++l +l+e+ G+               p   + +flGd+vdrG++  + + l    ++    + + ++Gnhe 
  MMETSP1137-20121227|8493_1  79 ELEAPIQIVGDIHGQYHDLLRLFEHCGF---------------PPDANYLFLGDYVDRGKNGLECMCLLlaYKIKYPENFFLLRGNHEC 152
                 5678***********************9...............3334679***********9998765411556667788899999996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (343 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        57  (0.0138957); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.28u 0.17s 00:00:00.45 Elapsed: 00:00:00.36
# Mc/sec: 1257.56
//
Query:       MMETSP1137-20121227|8494_1  [L=205]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (205 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       133  (0.0324232); expected 82.0 (0.02)
Passed bias filter:                       96  (0.0234032); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.17s 00:00:00.38 Elapsed: 00:00:00.43
# Mc/sec: 629.25
//
Query:       MMETSP1137-20121227|8495_1  [L=325]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (325 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        75  (0.0182838); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.16s 00:00:00.40 Elapsed: 00:00:00.45
# Mc/sec: 953.25
//
Query:       MMETSP1137-20121227|8496_1  [L=541]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (541 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       109  (0.0265724); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.13s 00:00:00.49 Elapsed: 00:00:00.56
# Mc/sec: 1275.11
//
Query:       MMETSP1137-20121227|8497_1  [L=164]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.8e-07   27.2   0.1    1.2e-06   25.8   0.1    1.4  1  TIGR00782 ccoP: cytochrome c oxidase, cbb3-type, subunit III
      1e-05   23.1   0.5    6.4e-05   20.5   0.1    2.0  2  TIGR03045 PS_II_C550: cytochrome c-550
    0.00014   19.3   0.3    0.00037   18.0   0.2    1.9  1  TIGR03046 PS_II_psbV2: photosystem II cytochrome PsbV2


Domain annotation for each model (and alignments):
>> TIGR00782  ccoP: cytochrome c oxidase, cbb3-type, subunit III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.8   0.1   9.1e-10   1.2e-06     199     279 ..      49     128 ..      10     134 .. 0.62

  Alignments for each domain:
  == domain 1    score: 25.8 bits;  conditional E-value: 9.1e-10
   TIGR00782 199 dealaakGkelFadnCvsChgedgkGlqelgapnltddvwlyGgd..kktivttikkGrigvmPawkkrlseaqikalaayvh 279
                  ++  ++G+++Fa+ C++Ch    + +++ +   l  dv        + +i  ++++G+  +mPa++ rl +++i  +a yv 
  MMETSP1137-20121227|8497_1  49 KAPNTEAGAKVFASVCSACHLGGYNAVRAEK--TLQLDVLKENNMfaADAIEYQVTNGKN-NMPAFGGRLTDDEITDVAYYVI 128
                 3445667777777777777754444444433..333333322222223456667777764.6777777777777777777774 PP

>> TIGR03045  PS_II_C550: cytochrome c-550
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   0.1   4.7e-08   6.4e-05      24      86 ..      27      88 ..       8     113 .. 0.76
   2 ?    0.8   0.0     0.055        75     132     149 ..     115     132 ..     113     137 .. 0.88

  Alignments for each domain:
  == domain 1    score: 20.5 bits;  conditional E-value: 4.7e-08
   TIGR03045 24 saaeldeetrtvkldseGetvvlteeqvkkgkrlfnsaCatChvgGitktnpnvgLdleaLel 86
                 a+ l ++ ++ +l ++ +t++    + ++g ++f s C++Ch gG      + +L+l+ L+ 
  MMETSP1137-20121227|8497_1 27 AAMVLSASLLANPLAAHARTLTK-APNTEAGAKVFASVCSACHLGGYNAVRAEKTLQLDVLKE 88
                45556666666666666444443.346899*****************9999999999988865 PP

  == domain 2    score: 0.8 bits;  conditional E-value: 0.055
   TIGR03045 132 LtdedLkliagyiLvqpk 149
                 Ltd++++ +a y++ q++
  MMETSP1137-20121227|8497_1 115 LTDDEITDVAYYVIYQSQ 132
                 9************99986 PP

>> TIGR03046  PS_II_psbV2: photosystem II cytochrome PsbV2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.2   2.7e-07   0.00037      49      92 ..      44      88 ..      10     137 .. 0.86

  Alignments for each domain:
  == domain 1    score: 18.0 bits;  conditional E-value: 2.7e-07
   TIGR03046 49 lktft.aedlteGkklfesncknchvGGatlpnPkvslslkdlkG 92
                 +t+t a +  +G k f+s c  ch+GG + +  + +l l+ lk 
  MMETSP1137-20121227|8497_1 44 ARTLTkAPNTEAGAKVFASVCSACHLGGYNAVRAEKTLQLDVLKE 88
                444442346689********************9999999998885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (164 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       151  (0.0368113); expected 82.0 (0.02)
Passed bias filter:                      121  (0.0294978); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.20u 0.16s 00:00:00.36 Elapsed: 00:00:00.65
# Mc/sec: 333.02
//
Query:       MMETSP1137-20121227|8498_1  [L=89]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (89 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        10  (0.00243784); expected 82.0 (0.02)
Passed bias filter:                       10  (0.00243784); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.12s 00:00:00.25 Elapsed: 00:00:00.25
# Mc/sec: 469.88
//
Query:       MMETSP1137-20121227|8499_1  [L=340]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (340 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       144  (0.0351048); expected 82.0 (0.02)
Passed bias filter:                      101  (0.0246221); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.18s 00:00:00.46 Elapsed: 00:00:01.01
# Mc/sec: 444.32
//
Query:       MMETSP1137-20121227|8500_1  [L=261]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (261 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       164  (0.0399805); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.13s 00:00:00.35 Elapsed: 00:00:00.35
# Mc/sec: 984.26
//
Query:       MMETSP1137-20121227|8501_1  [L=333]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (333 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        76  (0.0185275); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.13s 00:00:00.38 Elapsed: 00:00:00.39
# Mc/sec: 1126.98
//
Query:       MMETSP1137-20121227|8502_1  [L=422]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.01   13.8   0.0      0.022   12.7   0.0    1.7  1  TIGR04169 perox_w_seleSAM: alkylhydroperoxidase/carboxymuconolactone decarboxylase family protein
        2.6    3.4  22.6        3.9    2.8  15.6    1.1  1  TIGR02168 SMC_prok_B: chromosome segregation protein SMC
        4.1    4.4  14.4        7.3    3.5  10.0    1.3  1  TIGR03752 conj_TIGR03752: integrating conjugative element protein, PFL_4705 family


Domain annotation for each model (and alignments):
>> TIGR04169  perox_w_seleSAM: alkylhydroperoxidase/carboxymuconolactone decarboxylase family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   1.6e-05     0.022      37      70 ..      84     117 ..      32     155 .. 0.79

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 1.6e-05
   TIGR04169  37 Gal.serekalialavahavkcpycida.ytktsle 70 
                 G+l s re al  l  ah +kc yc++a y+k   e
  MMETSP1137-20121227|8502_1  84 GSLqSLRELALAHLQRAHELKCRYCLHAtYAK--RE 117
                 555367********************982433..34 PP

>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8  15.6    0.0028       3.9     666     816 ..     223     374 ..     213     399 .. 0.55

  Alignments for each domain:
  == domain 1    score: 2.8 bits;  conditional E-value: 0.0028
   TIGR02168 666 gsektessilerkkeieeleeeieeleekiaelekelkelekeleeleeeleklrkeleel.erklselkkelerlekeveqleerlaqlekeleeleeereeleeeleeaeeelkeaeeeieeleaeieqlkeelkalrealseleaelte 816
                 gs++++++ +++++++++l +e ++l+++++el+++l +++++ +e     +k+ ++l++     ++ + +++++ e++  ql++ ++++++  e+++++ + ++ + + a++ ++ +  ++ +l   ++++ +e  +l++   + e+++++
  MMETSP1137-20121227|8502_1 223 GSRSAHEVFQAQRQQVSHLAAENATLKQRVTELQAALVKVQRRAKEQLRLSKKALAALRDVqAXPSAGAXEQVRKYEQRWAQLKASARRRQQLKEQQQQQHTPAQGQQHAAQHGAQPQLMQQRQLAPGMTAQLQESLSLQQGGGRHERAVER 374
                 55567777888888888888888888888888888888777765555545555555555441334555666666666666666666666666666666666666666655555555444444444444444433333333333333333332 PP

>> TIGR03752  conj_TIGR03752: integrating conjugative element protein, PFL_4705 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5  10.0    0.0053       7.3      69     168 ..     232     338 ..     227     400 .. 0.71

  Alignments for each domain:
  == domain 1    score: 3.5 bits;  conditional E-value: 0.0053
   TIGR03752  69 kelrkelaklekeNeklkkenerlkkreesvderiqqaleaekkelkkekeqlkeeqakleelldelqkkle........dvaaekesseedlpvglGleegdkaqse 168
                 ++ r+++++l +eN +lk++ ++l++   +v++r +++l+  kk+l++ ++ ++   a + e++++ +++ +         ++ +++++++ +p   G ++++++ ++
  MMETSP1137-20121227|8502_1 232 QAQRQQVSHLAAENATLKQRVTELQAALVKVQRRAKEQLRLSKKALAALRDVQAXPSAGAXEQVRKYEQRWAqlkasarrRQQLKEQQQQQHTPAQ-GQQHAAQHGAQ 338
                 67899**************************************99999999999888888888888888877666766665555555566666644.66666655553 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (422 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       355  (0.0865431); expected 82.0 (0.02)
Passed bias filter:                      108  (0.0263286); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.36u 0.16s 00:00:00.52 Elapsed: 00:00:00.50
# Mc/sec: 1113.99
//
Query:       MMETSP1137-20121227|8503_1  [L=366]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (366 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        42  (0.0102389); expected 82.0 (0.02)
Passed bias filter:                       41  (0.00999512); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.14s 00:00:00.42 Elapsed: 00:00:00.31
# Mc/sec: 1558.32
//
Query:       MMETSP1137-20121227|8504_1  [L=50]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (50 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        60  (0.014627); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.18s 00:00:00.28 Elapsed: 00:00:00.32
# Mc/sec: 206.23
//
Query:       MMETSP1137-20121227|8505_1  [L=152]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (152 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        23  (0.00560702); expected 82.0 (0.02)
Passed bias filter:                       22  (0.00536324); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.12s 00:00:00.28 Elapsed: 00:00:00.54
# Mc/sec: 371.52
//
Query:       MMETSP1137-20121227|8506_1  [L=927]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (927 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       151  (0.0368113); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.55u 0.16s 00:00:00.71 Elapsed: 00:00:00.53
# Mc/sec: 2308.56
//
Query:       MMETSP1137-20121227|8507_1  [L=442]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (442 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        91  (0.0221843); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.15s 00:00:00.42 Elapsed: 00:00:00.43
# Mc/sec: 1356.73
//
Query:       MMETSP1137-20121227|8508_1  [L=488]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   7.7e-179  592.7   0.4   8.7e-179  592.5   0.3    1.0  1  TIGR00936 ahcY: adenosylhomocysteinase
    1.2e-06   25.8   0.4    2.2e-06   25.0   0.3    1.3  1  TIGR02853 spore_dpaA: dipicolinic acid synthetase, A subunit
     0.0001   19.3   0.3    0.00014   18.8   0.2    1.2  1  TIGR00465 ilvC: ketol-acid reductoisomerase
      0.002   15.1   0.2     0.0038   14.2   0.2    1.5  1  TIGR03911 pyrrolys_PylD: pyrrolysine biosynthesis protein PylD
     0.0023   14.6   2.0     0.0035   14.0   1.4    1.1  1  TIGR01327 PGDH: phosphoglycerate dehydrogenase
     0.0079   13.0   0.9       0.02   11.7   0.2    1.8  2  TIGR01035 hemA: glutamyl-tRNA reductase


Domain annotation for each model (and alignments):
>> TIGR00936  ahcY: adenosylhomocysteinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  592.5   0.3  1.3e-181  8.7e-179       1     416 []      12     480 ..      12     480 .. 0.97

  Alignments for each domain:
  == domain 1    score: 592.5 bits;  conditional E-value: 1.3e-181
   TIGR00936   1 ykvkdlslaeeGrkkielaerempvLkkireefaeekPlkGvriaaclhltvktavLietLkalGaevalascnilstqddvaaalakakgvpvfawkGeteeeyyealekvle....kepniilddGadlivlvhk.........................................kreellekvlGvseetttGvirLralakeGkLkfpviavndavtkslfdnryGtgqslldgilratnlliaGktvvvaGyGwvGkGvaerlrGlGarvivtevdpikaleaamdGfevvtmeeaakegdifvtatGnkdvireehlekmkdgailanaGhfdveidvkaLeelakekkevkkqvdeyklkdGrriillaeGrLvnLaaaeGhpsevmdmsfanqalaaeellkkkdk.........lekkvyrlpkeldeavarlklealgveldkLteeqkeylesweeGt 416
                 ykv+d+sla++Grk+++lae+emp+L++ r ef   +Pl+Gvr+ ++lh+t++t vLietL +lGa+v++ scni+stqd++a+a+++a   +vfawkGet eey+++ +k+l+    + p+ i+ddG+d++ l+h+                                         + ++++  ++GvseetttGv+rL a+a++G+L fp+i+vnd+vtks+fdn yG+++sl dgi+rat+++++Gk+vv++G+G+vGkG a+ ++ + a v vte+dpi al+a m+Gf+vvtme+ ++++d+f+t+tGnkd+i+ eh++kmk++ai++n+Ghfd+ei+++aLe+  ++++++k+q d+y+++dG+ +i+laeGrL+nL++a+Ghps+vm++sf+nq+la+ el k             ++++vy lpkelde+varl+l +lg +l++Lt++q+ y+++++ G+
  MMETSP1137-20121227|8508_1  12 YKVADMSLADFGRKELDLAEHEMPGLMAARTEFGPAQPLAGVRVMGSLHMTIQTGVLIETLAHLGADVRWCSCNIFSTQDHAASACVRAGTSNVFAWKGETLEEYWWCTDKALTwpdgEGPDQIVDDGGDATLLLHEgkkfedayakdgslpdpastdnaefkcvlatikasiqkdpkRFTKMVTRMIGVSEETTTGVHRLIAMAEKGELLFPAINVNDCVTKSKFDNVYGCRHSLPDGIMRATDVMLSGKKVVICGFGDVGKGSAQSMKAQAAIVYVTEIDPICALQACMEGFQVVTMEDVISIADVFITTTGNKDIITLEHMKKMKNNAIVGNIGHFDNEIQMEALEKA-ATRMNIKPQCDKYIFPDGHGVIVLAEGRLLNLGCATGHPSFVMSNSFTNQTLAQLELRKAYVAagndktkskYQNQVYLLPKELDEKVARLHLGQLGAHLTELTKDQADYIGVKADGP 480
                 9***************************************************************************************88889*********************999999*********************************************************999************************************************************************************************************************************************************************975.6789**************************************************999765332333335555****************************************999986 PP

>> TIGR02853  spore_dpaA: dipicolinic acid synthetase, A subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.0   0.3   3.2e-09   2.2e-06     142     236 ..     252     344 ..     249     378 .. 0.90

  Alignments for each domain:
  == domain 1    score: 25.0 bits;  conditional E-value: 3.2e-09
   TIGR02853 142 iestdftihgsrvlvlGlGrtGktiarllsalgakvsvaareskdlarilelglepvelkeleekvaeiDivintiPa.lvltkdvlsklpkhavi 236
                 ++ td+ + g +v++ G+G +Gk  a+ ++a +a v v+     d   +l++++e +++  +e+ ++ +D+ i t  +  ++t + ++k++++a++
  MMETSP1137-20121227|8508_1 252 MRATDVMLSGKKVVICGFGDVGKGSAQSMKAQAAIVYVTE---IDPICALQACMEGFQVVTMEDVISIADVFITTTGNkDIITLEHMKKMKNNAIV 344
                 7899*********************************975...4555678999********************9987516**************98 PP

>> TIGR00465  ilvC: ketol-acid reductoisomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.2   2.1e-07   0.00014       1      70 [.     259     327 ..     259     373 .. 0.77

  Alignments for each domain:
  == domain 1    score: 18.8 bits;  conditional E-value: 2.1e-07
   TIGR00465   1 lkgkkvaiiGyGsqGeaqalnlrdsglnvivglrkeaaswkkAeedGfkvltveeaikkadlimiLlpDe 70 
                 l gkkv+i G+G  G++ a  ++     +++    +     +A  +Gf+v+t+e++i+ ad+ ++ + ++
  MMETSP1137-20121227|8508_1 259 LSGKKVVICGFGDVGKGSAQSMKAQAA-IVYVTEIDPICALQACMEGFQVVTMEDVISIADVFITTTGNK 327
                 679********************8765.555556666888999******************998877665 PP

>> TIGR03911  pyrrolys_PylD: pyrrolysine biosynthesis protein PylD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.2   5.6e-06    0.0038     134     223 ..     253     336 ..     200     370 .. 0.77

  Alignments for each domain:
  == domain 1    score: 14.2 bits;  conditional E-value: 5.6e-06
   TIGR03911 134 ealdllkaglkekdvlviGlGkvGtaaavalvkkGakvyvydkekelleklvkdlpevgieaeesealkkfslifeatPeagliseevls 223
                  a d++ +g   k+v++ G G vG+++a+ +  + a vyv +++   + ++  +    ++ ++ ++  +  ++ +  t ++++i+ e+++
  MMETSP1137-20121227|8508_1 253 RATDVMLSG---KKVVICGFGDVGKGSAQSMKAQAAIVYVTEIDPICALQACMEG--FQVVTM-EDVISIADVFITTTGNKDIITLEHMK 336
                 577777777...99***************************99987765554443..222222.22334456666677777777777665 PP

>> TIGR01327  PGDH: phosphoglycerate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   1.4   5.1e-06    0.0035     136     232 ..     259     348 ..     255     369 .. 0.77

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 5.1e-06
   TIGR01327 136 lygktlGviGlGriGsevak..rakalgmkvlayDPyiseekaeklgvellkdldellaeaDvitvHvPltketkgligkeelakmKkgviivNcaRGG 232
                 l gk++ + G+G +G+  a+  +a+a  ++v   DP     +a   g + + +++++++ aDv       t   k++i  e+++kmK+++i+ N+   G
  MMETSP1137-20121227|8508_1 259 LSGKKVVICGFGDVGKGSAQsmKAQAAIVYVTEIDPIC-ALQACMEGFQ-VVTMEDVISIADVFI----TTTGNKDIITLEHMKKMKNNAIVGNI---G 348
                 789************9999822455566788999**65.5567777999.778*********854....4677899***************9997...3 PP

>> TIGR01035  hemA: glutamyl-tRNA reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.7   0.2   2.9e-05      0.02     178     266 ..     259     341 ..     251     350 .. 0.76
   2 ?   -1.4   0.0      0.28   1.9e+02     113     140 ..     411     440 ..     396     444 .. 0.80

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 2.9e-05
   TIGR01035 178 LkgkkvlliGaGemaeLvakhLkekgvkkvlilnRtyekaekLakeleeeavklekleealaeadivissTgapepivskedleralke 266
                 L+gkkv++ G G++++ +a+ +k++  + v ++         L   +e    ++  +e+++  ad+ i++Tg ++ i++ e++++++++
  MMETSP1137-20121227|8508_1 259 LSGKKVVICGFGDVGKGSAQSMKAQA-AIVYVTE--IDPICALQACME--GFQVVTMEDVISIADVFITTTGNKD-IITLEHMKKMKNN 341
                 99********************9988.5555554..444444444444..45556899*************9877.6677788877765 PP

  == domain 2    score: -1.4 bits;  conditional E-value: 0.28
   TIGR01035 113 eQilgQ..vkeaykvakeektvgkvLerlf 140
                 +Q l+Q  +++ay  a ++kt +k  ++++
  MMETSP1137-20121227|8508_1 411 NQTLAQleLRKAYVAAGNDKTKSKYQNQVY 440
                 588888445999999999999999877765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (488 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       183  (0.0446124); expected 82.0 (0.02)
Passed bias filter:                      115  (0.0280351); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.33u 0.22s 00:00:00.55 Elapsed: 00:00:00.38
# Mc/sec: 1695.02
//
Query:       MMETSP1137-20121227|8509_1  [L=313]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (313 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        87  (0.0212092); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.24s 00:00:00.40 Elapsed: 00:00:00.31
# Mc/sec: 1332.66
//
Query:       MMETSP1137-20121227|8512_1  [L=138]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (138 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        51  (0.012433); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.19s 00:00:00.31 Elapsed: 00:00:00.25
# Mc/sec: 728.58
//
Query:       MMETSP1137-20121227|8513_1  [L=344]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.9e-77  253.9   0.0    2.9e-38  128.5   0.0    2.1  2  TIGR00068 glyox_I: lactoylglutathione lyase
      2e-10   38.5   0.0    0.00046   17.6   0.0    3.2  3  TIGR01263 4HPPD: 4-hydroxyphenylpyruvate dioxygenase
    1.1e-09   35.9   0.1     0.0038   14.4   0.0    4.0  4  TIGR03211 catechol_2_3: catechol 2,3 dioxygenase
    1.8e-09   36.0   0.0     0.0026   16.2   0.0    3.9  3  TIGR03081 metmalonyl_epim: methylmalonyl-CoA epimerase
    4.9e-07   27.3   0.0    0.00085   16.7   0.0    3.8  4  TIGR03213 23dbph12diox: 2,3-dihydroxybiphenyl 1,2-dioxygenase
    9.7e-07   26.1   0.0       0.12    9.4   0.0    3.7  4  TIGR02295 HpaD: 3,4-dihydroxyphenylacetate 2,3-dioxygenase


Domain annotation for each model (and alignments):
>> TIGR00068  glyox_I: lactoylglutathione lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  123.5   0.0   1.5e-39     1e-36      17     142 ..       8     174 ..       2     177 .. 0.96
   2 !  128.5   0.0   4.3e-41   2.9e-38      14     144 ..     180     336 ..     176     342 .. 0.93

  Alignments for each domain:
  == domain 1    score: 123.5 bits;  conditional E-value: 1.5e-39
   TIGR00068  17 lllhtmlrvgdldksldfytevlGmkllrkkdfpeekfslaflgyedessa....................avieLtynwgtek.....................ydlGn..gfGhiaiavddvykacervkakGgkvvrepgpvkggtkviafvkDPDGykiellekk 142
                 + ++tmlr++d+++sl+fy++ + m+l+++ dfp+ kfsl+fl    +++                     +++eLt+n+g e+                     y  G   gfGhia +v+dvy++  ++++ G+++ ++p  ++g++k++af  DPDGy+iel++++
  MMETSP1137-20121227|8513_1   8 RWQQTMLRIKDPKASLEFYKKHFNMQLVHRYDFPQWKFSLYFLERPRDKDIeslpppgtkeseqylwsmqgTTLELTHNHGSEHdptfsvwsgnqgsdlpkdsplYREGVirGFGHIAFNVEDVYATSAQLEKDGVRFQKRP--DEGRMKGLAFCLDPDGYWIELVKRD 174
                 679****************************************9988887789******************************99***************999999999899****************************99..*********************9876 PP

  == domain 2    score: 128.5 bits;  conditional E-value: 4.3e-41
   TIGR00068  14 kkylllhtmlrvgdldksldfytevlGmkllrkkdfpeekfslaflgyedessa....................avieLtynwgtek.....ydlGn....gfGhiaiavddvykacervkakGgkvvrepgpvkggtkviafvkDPDGykiellekkkt 144
                 +++ l +tm+rv+d +k++ fy +vlGm+l+r++ +p+  fs+ fl+   e+++                     v+eLt+n+gtek      ++Gn    gfGhi+  vdd+ ++c++++++G+ + ++p   +g++++iafv DP+Gy+iel++++ t
  MMETSP1137-20121227|8513_1 180 ENQNLSQTMMRVKDAEKTISFYRDVLGMTLIREMTVPN-DFSNFFLACLSEEEKksapapdsaeardfvkrlwqPVLELTHNHGTEKddqfnVHTGNsdpvGFGHIGFLVDDLVRTCDEMEKRGVPFHKRP--NEGNMSQIAFVLDPNGYRIELIQRGCT 336
                 567899*****************************996.799999998777776789*****************9************8998888899*********************************9..***********************9865 PP

>> TIGR01263  4HPPD: 4-hydroxyphenylpyruvate dioxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.0   6.7e-07   0.00046     238     268 ..     120     150 ..     115     152 .. 0.93
   2 ?    2.0   0.0     0.037        25     170     205 ..     193     228 ..     182     235 .. 0.79
   3 !   14.8   0.0   4.7e-06    0.0032     225     268 ..     267     310 ..     254     313 .. 0.80

  Alignments for each domain:
  == domain 1    score: 17.6 bits;  conditional E-value: 6.7e-07
   TIGR01263 238 GvQHlAlntedivktveelrargveflkipe 268
                 G  H+A+n+ed+++t ++l++ gv+f k p+
  MMETSP1137-20121227|8513_1 120 GFGHIAFNVEDVYATSAQLEKDGVRFQKRPD 150
                 778*************************997 PP

  == domain 2    score: 2.0 bits;  conditional E-value: 0.037
   TIGR01263 170 elekvaefyekilgfkeiksfdikteasaLkSkvla 205
                 + ek+++fy+++lg++ i+++++  ++s +    l 
  MMETSP1137-20121227|8513_1 193 DAEKTISFYRDVLGMTLIREMTVPNDFSNFFLACLS 228
                 558999***************999888877655555 PP

  == domain 3    score: 14.8 bits;  conditional E-value: 4.7e-06
   TIGR01263 225 sQIeeyleeyeGaGvQHlAlntedivktveelrargveflkipe 268
                  Q + +  + +  G  H+ ++++d+v+t +e+++rgv f k p+
  MMETSP1137-20121227|8513_1 267 DQFNVHTGNSDPVGFGHIGFLVDDLVRTCDEMEKRGVPFHKRPN 310
                 5555555566667999***********************99886 PP

>> TIGR03211  catechol_2_3: catechol 2,3 dioxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.0     0.017        11       7      34 ..      11      38 ..       7      43 .. 0.88
   2 ?    2.1   0.0     0.029        20      60     118 ..     120     173 ..     108     188 .. 0.73
   3 !   14.4   0.0   5.5e-06    0.0038       5      50 ..     184     234 ..     180     243 .. 0.72
   4 !   11.4   0.0   4.4e-05      0.03     208     267 ..     281     335 ..     266     340 .. 0.86

  Alignments for each domain:
  == domain 1    score: 2.9 bits;  conditional E-value: 0.017
   TIGR03211  7 hvelrvldleealkfykdvlGleetgrd 34
                +  lr+ d+ ++l+fyk+   ++ ++r 
  MMETSP1137-20121227|8513_1 11 QTMLRIKDPKASLEFYKKHFNMQLVHRY 38
                567999*****************99985 PP

  == domain 2    score: 2.1 bits;  conditional E-value: 0.029
   TIGR03211  60 gldhvafkveseadLeklekkleaaGveverieagedlevGeavrfelPsgheleLyae 118
                 g  h+af ve   d+ +++++le+ Gv+ ++ +++ ++  G a+ +  P+g  +eL+  
  MMETSP1137-20121227|8513_1 120 GFGHIAFNVE---DVYATSAQLEKDGVRFQKRPDEGRM-KGLAF-CLDPDGYWIELVKR 173
                 7788888886...5778899999999999999984443.45444.45688888887765 PP

  == domain 3    score: 14.4 bits;  conditional E-value: 5.5e-06
   TIGR03211   5 lghvelrvldleealkfykdvlGleetgr...deq..svYlkawdewdkys 50 
                 l +  +rv d e++++fy+dvlG++  ++    ++  + +l +  e +k s
  MMETSP1137-20121227|8513_1 184 LSQTMMRVKDAEKTISFYRDVLGMTLIREmtvPNDfsNFFLACLSEEEKKS 234
                 677889******************865431112222367777777776665 PP

  == domain 4    score: 11.4 bits;  conditional E-value: 4.4e-05
   TIGR03211 208 lhHvsflldswedvlkaaDvlskndvkidvgptrHgitrgqtiYvfdPsGnrvElfaggy 267
                 + H+ fl+d   d+++  D ++k +v +   p+   ++  q+ +v dP+G r+El++ g 
  MMETSP1137-20121227|8513_1 281 FGHIGFLVD---DLVRTCDEMEKRGVPFHKRPNEGNMS--QIAFVLDPNGYRIELIQRGC 335
                 789999987...899******************99876..57789**********98775 PP

>> TIGR03081  metmalonyl_epim: methylmalonyl-CoA epimerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.0     0.037        25       9      55 ..      16      63 ..      11      81 .. 0.84
   2 !   10.3   0.0   0.00024      0.16      72     101 ..     119     147 ..     108     166 .. 0.85
   3 !   16.2   0.0   3.8e-06    0.0026       7     115 ..     189     320 ..     183     332 .. 0.76

  Alignments for each domain:
  == domain 1    score: 3.3 bits;  conditional E-value: 0.037
   TIGR03081  9 vkdleeaaklyrdvlGakvseeeelpeqgvkvvflelg.etklellep 55
                +kd ++  ++y++ + +++ ++ ++p+ + +  fle   +  +e l p
  MMETSP1137-20121227|8513_1 16 IKDPKASLEFYKKHFNMQLVHRYDFPQWKFSLYFLERPrDKDIESLPP 63
                567778899*************************99775788888776 PP

  == domain 2    score: 10.3 bits;  conditional E-value: 0.00024
   TIGR03081  72 eGlhhialevddieaaletlkekgvrllde 101
                 +G  hia++v+d+ a++++l+++gvr  ++
  MMETSP1137-20121227|8513_1 119 RGFGHIAFNVEDVYATSAQLEKDGVRF-QK 147
                 6999*********************96.34 PP

  == domain 3    score: 16.2 bits;  conditional E-value: 3.8e-06
   TIGR03081   7 iavkdleeaaklyrdvlGa......................kvseeeelpeqgvkvvflelg.etklellep..leedspiakflekkkgeGlhhialevddieaaletlkekgvrlldeepriGahGkkvaFl 115
                 + vkd+e+ +++yrdvlG+                      + +++ + p+      f++   +  lel +   +e+d   + +  + +  G  hi + vdd+  + ++++++gv   +++p  G    ++aF+
  MMETSP1137-20121227|8513_1 189 MRVKDAEKTISFYRDVLGMtliremtvpndfsnfflaclseEEKKSAPAPDSAEARDFVKRLwQPVLELTHNhgTEKDDQFNVHTGNSDPVGFGHIGFLVDDLVRTCDEMEKRGVP-FHKRPNEGNMS-QIAFV 320
                 679****************8999999999999999988876556666677776666677655478899987522566777777777777779999999999999999999999995.67888888764.45554 PP

>> TIGR03213  23dbph12diox: 2,3-dihydroxybiphenyl 1,2-dioxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.0     0.012         8     147     187 ..      13      50 ..      10      72 .. 0.82
   2 ?   -0.1   0.0      0.16   1.1e+02       2      32 ..     119     148 ..     115     159 .. 0.59
   3 !   16.7   0.0   1.2e-06   0.00085     135     180 ..     176     219 ..     134     235 .. 0.86
   4 ?    0.9   0.0     0.081        55      49     115 ..     269     330 ..     263     337 .. 0.71

  Alignments for each domain:
  == domain 1    score: 3.6 bits;  conditional E-value: 0.012
   TIGR03213 147 vlavedvdaaleFYtevLGlqlsdviklkieeglsvrlaFl 187
                 +l+++d +a+leFY++   +ql   ++++     +  l+Fl
  MMETSP1137-20121227|8513_1  13 MLRIKDPKASLEFYKKHFNMQLVHRYDFPQW---KFSLYFL 50 
                 6899*****************9999887654...3445555 PP

  == domain 2    score: -0.1 bits;  conditional E-value: 0.16
   TIGR03213   2 kelGYlgievsDldaWrefaaevlGlevaee 32 
                 +++G++ ++v+D+ a  + + e+ G+  +++
  MMETSP1137-20121227|8513_1 119 RGFGHIAFNVEDVYATSAQL-EKDGVRFQKR 148
                 55566666666665554444.4445555555 PP

  == domain 3    score: 16.7 bits;  conditional E-value: 1.2e-06
   TIGR03213 135 gfvtgdqGlGhvvlavedvdaaleFYtevLGlqlsdviklkieegl 180
                 g   ++q l  ++++v+d +++++FY++vLG++l  +++++  +++
  MMETSP1137-20121227|8513_1 176 GLFAENQNLSQTMMRVKDAEKTISFYRDVLGMTLIREMTVP--NDF 219
                 56789999************************998776554..444 PP

  == domain 4    score: 0.9 bits;  conditional E-value: 0.081
   TIGR03213  49 iavlkgesDdlay..vGwevadeealeevkeklekagvavevaseeeaeergvlglikftDPaGnrlei 115
                 + v+ g+sD + +  +G+ v+d   l +  +++ek gv +++  +    e ++ +++ + DP G r+e+
  MMETSP1137-20121227|8513_1 269 FNVHTGNSDPVGFghIGFLVDD---LVRTCDEMEKRGVPFHKRPN----EGNMSQIAFVLDPNGYRIEL 330
                 6778888887643338888876...67778888888988876554....44566777788999999885 PP

>> TIGR02295  HpaD: 3,4-dihydroxyphenylacetate 2,3-dioxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0      0.23   1.6e+02       7      29 ..      11      33 ..       6      41 .. 0.62
   2 !    4.1   0.0    0.0068       4.6      60     116 ..     120     171 ..     110     183 .. 0.80
   3 !    9.4   0.0   0.00017      0.12       5      30 ..     184     209 ..     180     234 .. 0.84
   4 !    7.5   0.0   0.00064      0.44      42     115 ..     262     330 ..     256     335 .. 0.80

  Alignments for each domain:
  == domain 1    score: -0.9 bits;  conditional E-value: 0.23
   TIGR02295  7 hvelvvtDLeksrefYseilGlr 29
                + +l+++D + s+efY++ + ++
  MMETSP1137-20121227|8513_1 11 QTMLRIKDPKASLEFYKKHFNMQ 33
                55666777777777776654444 PP

  == domain 2    score: 4.1 bits;  conditional E-value: 0.0068
   TIGR02295  60 alkalafrvseeedldkladllkelGlkvklveekvekgigealrvedpeGiplely 116
                 +  ++af v   ed+ + +++l+++G++ +++ ++++  +g a+   dp G+ +el 
  MMETSP1137-20121227|8513_1 120 GFGHIAFNV---EDVYATSAQLEKDGVRFQKRPDEGRM-KGLAFC-LDPDGYWIELV 171
                 556677766...89*****************9999888.565554.59999999885 PP

  == domain 3    score: 9.4 bits;  conditional E-value: 0.00017
   TIGR02295   5 vghvelvvtDLeksrefYseilGlre 30 
                 +++ +++v+D ek+  fY ++lG++ 
  MMETSP1137-20121227|8513_1 184 LSQTMMRVKDAEKTISFYRDVLGMTL 209
                 578899*****************975 PP

  == domain 4    score: 7.5 bits;  conditional E-value: 0.00064
   TIGR02295  42 gieefqhhsLvLkkapaaalkalafrvseeedldkladllkelGlkvklveekvekgigealrvedpeGiplel 115
                 g+e  +++++   +++  +  +++f v   +dl +  d+++++G++ +++ ++++    +   v dp+G+++el
  MMETSP1137-20121227|8513_1 262 GTEKDDQFNVHTGNSDPVGFGHIGFLV---DDLVRTCDEMEKRGVPFHKRPNEGNM--SQIAFVLDPNGYRIEL 330
                 666677777777777888888999988...58999999999999999988887776..6777899999999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (344 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        65  (0.0158459); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.27u 0.22s 00:00:00.49 Elapsed: 00:00:00.49
# Mc/sec: 926.62
//
Query:       MMETSP1137-20121227|8515_1  [L=1495]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.2e-17   61.0   7.2    2.3e-16   57.7   5.0    2.5  1  TIGR03921 T7SS_mycosin: type VII secretion-associated serine protease mycosin
    9.5e-07   25.7   0.7    1.6e-06   25.0   0.5    1.2  1  TIGR03895 protease_PatA: cyanobactin maturation protease, PatA/PatG family


Domain annotation for each model (and alignments):
>> TIGR03921  T7SS_mycosin: type VII secretion-associated serine protease mycosin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.7   5.0   1.1e-19   2.3e-16      12     261 ..     807    1073 ..     802    1083 .. 0.77

  Alignments for each domain:
  == domain 1    score: 57.7 bits;  conditional E-value: 1.1e-19
   TIGR03921   12 GagvtVAViDtGvd.rhPrLpgev.aGgDlve............sgdged.dcd......ghGTlvAglIAarpaegsGfvGvAPdakilpirqtskafedkeeksavgdletlAkairrAa.....d.sgAkVINiSevacl.saksaadeselgaAvkyalekdvvvvAaagnegqdgsktvvyPAay....pgVlaVgsidrsgepssfslagpwvdvaApgenlvsls..pggdglasavgespleGtSfAaplVsgvAaLvrskfpeltaaqvirrlea 261 
                  G+gv V V DtG++ +h++ +++  + +  v+             g+    dc       ghGT vAg+ A+ +      +G+A  a+i  ++ +++            + +++ +++ +A+     + +g  V  + + +      +++ +++ ++  ++ ++++v   ++agn+ +d+ +  ++PA++      V++Vg++  + ++ s+s  g  vdv Apg+ ++s++  p+ +g+  + g    +GtS+AaplV gv aL+ +++p  t+  + +++ +
  MMETSP1137-20121227|8515_1  807 GEGVHVFVFDTGINwAHRDFTEAGdDSKSRVDlsyhalkhsacvPGQLSMfDCLdtaagrGHGTHVAGIAAGLK------YGLATCARIHIVKLSESSDY---------TFASIERGVNWALlyhafNvQGKFVKGVPQRSVAiASLGTVRNENYNRLFRKLVDNGVATAVSAGNDDNDACQ--ASPASVgggaSAVVTVGATSYDDSKGSYSNYGSCVDVWAPGTAIASADgqPQPNGQFPRDGYRVKSGTSMAAPLVGGVLALLSQAYPYSTPLFLKNKVRS 1073
                  9*******************9987666655555556676666443333335664566777*************8......*********99998877666.........4444444444444111113134444455554444455567777777888888**************9999977..999997422256**********************************9988888888888889999**********************9999877766665 PP

>> TIGR03895  protease_PatA: cyanobactin maturation protease, PatA/PatG family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.0   0.5   7.7e-10   1.6e-06      83     176 ..     951    1055 ..     936    1065 .. 0.76

  Alignments for each domain:
  == domain 1    score: 25.0 bits;  conditional E-value: 7.7e-10
   TIGR03895   83 klcqenniLivaaaGndgc.eClhvPaal....psvlavGAmdadGrplefsnwGeaykeqGilApGenilgak.........pggetvrksGtslAtavvtgvaalL 176 
                  ++  +n +    +aGnd   +C   Pa++    ++v++vGA + d    ++sn+G       + ApG  i +a+         p+++ + ksGts+A+++v gv alL
  MMETSP1137-20121227|8515_1  951 RKLVDNGVATAVSAGNDDNdACQASPASVgggaSAVVTVGATSYDDSKGSYSNYGSCVD---VWAPGTAIASADgqpqpngqfPRDGYRVKSGTSMAAPLVGGVLALL 1055
                  556678888778889976527******99443346********************9764...6777777766632222222226788899**************9976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1495 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       116  (0.0282789); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.86u 0.21s 00:00:01.07 Elapsed: 00:00:01.07
# Mc/sec: 1844.15
//
Query:       MMETSP1137-20121227|8516_1  [L=298]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (298 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        42  (0.0102389); expected 82.0 (0.02)
Passed bias filter:                       37  (0.00901999); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.13s 00:00:00.35 Elapsed: 00:00:00.35
# Mc/sec: 1123.79
//
Query:       MMETSP1137-20121227|8517_1  [L=299]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.3e-20   71.5   0.0    2.7e-20   70.5   0.0    1.5  2  TIGR02447 yiiD_Cterm: putative thioesterase domain


Domain annotation for each model (and alignments):
>> TIGR02447  yiiD_Cterm: putative thioesterase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0      0.39   1.6e+03      33      45 ..      67      79 ..      60      81 .. 0.77
   2 !   70.5   0.0   6.5e-24   2.7e-20       4     131 ..     147     284 ..     144     290 .. 0.86

  Alignments for each domain:
  == domain 1    score: -3.3 bits;  conditional E-value: 0.39
   TIGR02447 33 NlNhketvFgGSl 45
                 +N+++  F+G +
  MMETSP1137-20121227|8517_1 67 CINPHSHYFSGQV 79
                5899999999976 PP

  == domain 2    score: 70.5 bits;  conditional E-value: 6.5e-24
   TIGR02447   4 saiPlsekmgiavseltd.....keltlsaplaaNlNhketvFgGSlyslatLsgWgll..ylrlqelkie.gdiviadseirYlaPvt.gdlkaeceapdlesleafletlqrkgkarvkleakissde.klaakfs 131
                 +a+P + ++gi v+++++     ++l+lsapl++N N ++t+F+GSl+++ +L+++ l+  +l+ + + +   d+v +d++i Y++P + ++++a++ +p+ ++l+af ++l  +gka + +  ++++d+ k+a++++
  MMETSP1137-20121227|8517_1 147 KAMPPAVSLGIGVDSIEEdsgqvHALSLSAPLKGNTNVHGTAFAGSLFAVGVLTSYYLVgeWLQRRGVDLAaYDVVAKDASIAYKRPASaERIVARSSMPSTSTLSAFEQELLTRGKATLPVPGRVMKDQqKVAVEYT 284
                 56777777888887776533333689*********************************666777766666679*************96379*************************************989999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (299 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       108  (0.0263286); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.25u 0.14s 00:00:00.39 Elapsed: 00:00:00.43
# Mc/sec: 917.78
//
Query:       MMETSP1137-20121227|8518_1  [L=219]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (219 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        67  (0.0163335); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.14s 00:00:00.34 Elapsed: 00:00:00.42
# Mc/sec: 688.23
//
Query:       MMETSP1137-20121227|8519_1  [L=458]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00053   18.0   0.0      0.001   17.0   0.0    1.5  1  TIGR00229 sensory_box: PAS domain S-box protein
     0.0039   13.6   0.0      0.007   12.7   0.0    1.3  1  TIGR02938 nifL_nitrog: nitrogen fixation negative regulator NifL


Domain annotation for each model (and alignments):
>> TIGR00229  sensory_box: PAS domain S-box protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.0     5e-07     0.001      24     115 ..     107     199 ..      81     204 .. 0.79

  Alignments for each domain:
  == domain 1    score: 17.0 bits;  conditional E-value: 5e-07
   TIGR00229  24 eGnilyvNrafeeifGYsaeeliGrnvlelipeedreevrerierrlegerepvseerrvkrkdGse....iwvevsvspirdaggelgvvgivrD 115
                 e+ i+yv + ++e+ G++  e++G+n++    ++   +  ++++++l++    +s ++r+ + +G      +w  +s+spi+ +g+++ ++++++D
  MMETSP1137-20121227|8519_1 107 ENPIVYVTEPWQEMCGLTYSEAVGQNPRVTQGPDTDAAAIKMMSTALSK---KNSCKVRLLNYRGGLasqpFWNMLSISPITYQGEIKLFMANLQD 199
                 6789*************************77777777777899999994...45666666666775434449*********************999 PP

>> TIGR02938  nifL_nitrog: nitrogen fixation negative regulator NifL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.7   0.0   3.4e-06     0.007       6     104 ..      87     189 ..      83     206 .. 0.84

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 3.4e-06
   TIGR02938   6 frqtvdqapvaisitd...lkanilyanaafseitGyakeeviGknesvlsnrttPpevyqalwgslaekkPwaGkllnrrk..dgelylaeltvaPvlneaGe 104
                 f +tvd   v++ it+       i+y+ + ++e+ G +  e +G+n  v     t     + +  +l++k+  + +lln r     + +   l+++P+    Ge
  MMETSP1137-20121227|8519_1  87 FLATVDTNSVSLVITNpllAENPIVYVTEPWQEMCGLTYSEAVGQNPRVTQGPDTDAAAIKMMSTALSKKNSCKVRLLNYRGglASQPFWNMLSISPITY-QGE 189
                 5689***********85422445********************************************************996224667888899999754.355 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (458 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        76  (0.0185275); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.32u 0.15s 00:00:00.47 Elapsed: 00:00:00.33
# Mc/sec: 1831.85
//
Query:       MMETSP1137-20121227|8520_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        22  (0.00536324); expected 82.0 (0.02)
Passed bias filter:                       22  (0.00536324); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.15s 00:00:00.27 Elapsed: 00:00:00.26
# Mc/sec: 269.05
//
Query:       MMETSP1137-20121227|8521_1  [L=141]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (141 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        60  (0.014627); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.14s 00:00:00.29 Elapsed: 00:00:00.28
# Mc/sec: 664.66
//
Query:       MMETSP1137-20121227|8522_1  [L=855]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (855 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        91  (0.0221843); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.51u 0.15s 00:00:00.66 Elapsed: 00:00:00.98
# Mc/sec: 1151.54
//
Query:       MMETSP1137-20121227|8523_1  [L=1111]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.6e-05   22.2   1.4    6.1e-05   20.4   0.0    2.2  2  TIGR03596 GTPase_YlqF: ribosome biogenesis GTP-binding protein YlqF
      0.002   15.0   0.6      0.034   11.0   0.1    2.8  3  TIGR03594 GTPase_EngA: ribosome-associated GTPase EngA


Domain annotation for each model (and alignments):
>> TIGR03596  GTPase_YlqF: ribosome biogenesis GTP-binding protein YlqF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   0.0     3e-08   6.1e-05      74     147 ..     143     218 ..     133     239 .. 0.82
   2 ?   -1.3   0.9      0.12   2.4e+02      70     116 ..     876     924 ..     865     935 .. 0.57

  Alignments for each domain:
  == domain 1    score: 20.4 bits;  conditional E-value: 3e-08
   TIGR03596  74 eekgkkalavnakkkkkvkkilkaikkllkekk..eklkakglkkkairalvvGiPNvGKStliNrlakkkvakvg 147
                 ee ++k l   ++++++v ++ k+ +k++++k   +++++kg   ++  ++v+G+   GKS+l+N++++  +a+v 
  MMETSP1137-20121227|8523_1 143 EEFDEKLLPQPQDSESEVGELEKEFRKITNNKGkfKENSEKGAGLRSADVVVIGLEGSGKSSLVNSIVRTAAADVN 218
                 55566777777888999999*******9988752267889*****************************9999886 PP

  == domain 2    score: -1.3 bits;  conditional E-value: 0.12
   TIGR03596  70 lkyfe.ekgkkalavnakkkkkv.kkilkaikkllkekkeklkakglkk 116
                 lk+fe + +k+   +n+ +k+++ +++++ i ++lk+kk+++++  ++ 
  MMETSP1137-20121227|8523_1 876 LKKFEeSFNKELRKINSYRKETMcEEMKRRIPEILKQKKNEQRKDKMAR 924
                 4444433345555566555555548888888888888776654444432 PP

>> TIGR03594  GTPase_EngA: ribosome-associated GTPase EngA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.0   0.1   1.7e-05     0.034     151     199 ..     162     213 ..     148     228 .. 0.64
   2 ?    0.1   0.0     0.032        66      47      85 ..     443     481 ..     436     490 .. 0.79
   3 ?   -1.5   0.1       0.1   2.1e+02     322     369 ..     980    1027 ..     960    1044 .. 0.64

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 1.7e-05
   TIGR03594 151 dLldeileelpeeeeeeeeeee...eepikiaiiGrpNvGKStLvNallgee 199
                 +L +e  +  +++ + +e++e+    ++  + +iG   +GKS+LvN+++++ 
  MMETSP1137-20121227|8523_1 162 ELEKEFRKITNNKGKFKENSEKgagLRSADVVVIGLEGSGKSSLVNSIVRTA 213
                 5555444444444222222222122446789999999999999999998765 PP

  == domain 2    score: 0.1 bits;  conditional E-value: 0.032
   TIGR03594  47 gkefiliDTgGleeeedelekeireqaelaieeadvilf 85 
                 + e++++D +G+++++d + ++i+  a    ++a ++l+
  MMETSP1137-20121227|8523_1 443 EFELRVVDAPGFNKHSDPFRQSIALAAVSGRASAATLLM 481
                 57899****************999877766666665554 PP

  == domain 3    score: -1.5 bits;  conditional E-value: 0.1
   TIGR03594  322 apivfiSAltgkgveklleaikevyeslskristsklnrvleeavekh 369 
                   ++v+ S++ ++++ ++++ ++e ++s ++    + + ++l++ +++h
  MMETSP1137-20121227|8523_1  980 LKLVVASCNGNRKCAEIIRDLDEKVKSGEEVHAQQVVEKLLNKELKQH 1027
                  567777888888888888777766666555555555555555544444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1111 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       260  (0.0633837); expected 82.0 (0.02)
Passed bias filter:                      120  (0.029254); expected 82.0 (0.02)
Passed Vit filter:                        31  (0.00755729); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.79u 0.15s 00:00:00.94 Elapsed: 00:00:01.02
# Mc/sec: 1437.65
//
Query:       MMETSP1137-20121227|8524_1  [L=171]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (171 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        36  (0.00877621); expected 82.0 (0.02)
Passed bias filter:                       36  (0.00877621); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.12s 00:00:00.29 Elapsed: 00:00:00.32
# Mc/sec: 705.32
//
Query:       MMETSP1137-20121227|8525_1  [L=213]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.056    9.9   1.9      0.077    9.4   1.3    1.1  1  TIGR01564 S_layer_MJ: S-layer protein


Domain annotation for each model (and alignments):
>> TIGR01564  S_layer_MJ: S-layer protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   1.3   1.9e-05     0.077       9      78 ..      46     117 ..      41     122 .. 0.82

  Alignments for each domain:
  == domain 1    score: 9.4 bits;  conditional E-value: 1.9e-05
   TIGR01564   9 GaavvaaaLalgvaaeeviedvkdfk..lvkdGePn.vkivvGseaaamDvvsaadiaakiGsllykegevks 78 
                 G+ +++a   ++  ae v ++++d +   v  GeP  +  + G + aa+   saa  aa +G   y e ev +
  MMETSP1137-20121227|8525_1  46 GGLLASAPPIAALLAETVEGGIEDVRieAVRRGEPClCARICGVDEAAAAAASAASAAAWVGP-AYGEDEVVV 117
                 5555556566678899999999**99778******7578899********************7.688888865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (213 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       103  (0.0251097); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.22u 0.14s 00:00:00.36 Elapsed: 00:00:00.35
# Mc/sec: 803.25
//
Query:       MMETSP1137-20121227|8526_1  [L=95]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.8e-07   27.1   0.1    7.2e-07   27.1   0.0    1.1  1  TIGR00986 3a0801s05tom22: mitochondrial import receptor subunit


Domain annotation for each model (and alignments):
>> TIGR00986  3a0801s05tom22: mitochondrial import receptor subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.1   0.0   1.7e-10   7.2e-07      79     121 ..      39      81 ..      11      90 .. 0.81

  Alignments for each domain:
  == domain 1    score: 27.1 bits;  conditional E-value: 1.7e-10
   TIGR00986  79 sfvkkalsfaGkaaWavstsaLLlGvPlalslaeeqqliemek 121
                  + kk +  +G+aaW+v t+ L++ +Pla+ ++ e+ql+e e+
  MMETSP1137-20121227|8526_1  39 RGAKKFIFGTGNAAWVVGTTMLVMVMPLAFEIEREAQLVEWEN 81 
                 4556666678******************************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (95 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       113  (0.0275475); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.14u 0.14s 00:00:00.28 Elapsed: 00:00:00.31
# Mc/sec: 404.48
//
Query:       MMETSP1137-20121227|8527_1  [L=223]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (223 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       149  (0.0363237); expected 82.0 (0.02)
Passed bias filter:                      108  (0.0263286); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.17s 00:00:00.41 Elapsed: 00:00:00.34
# Mc/sec: 865.69
//
Query:       MMETSP1137-20121227|8528_1  [L=355]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.026   12.5   1.1       0.58    8.1   0.2    2.7  2  TIGR02894 DNA_bind_RsfA: transcription factor, RsfA family


Domain annotation for each model (and alignments):
>> TIGR02894  DNA_bind_RsfA: transcription factor, RsfA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.0     0.012        51       3      22 ..      95     114 ..      93     117 .. 0.90
   2 ?    8.1   0.2   0.00014      0.58       2      58 ..     146     196 ..     145     204 .. 0.78

  Alignments for each domain:
  == domain 1    score: 1.8 bits;  conditional E-value: 0.012
   TIGR02894   3 rqdaWtdeedllLaevvLrh 22 
                 ++ aWt  ed  L e v +h
  MMETSP1137-20121227|8528_1  95 KKQAWTAAEDQKLMELVTQH 114
                 578**************998 PP

  == domain 2    score: 8.1 bits;  conditional E-value: 0.00014
   TIGR02894   2 trqdaWtdeedllLaevvLrhireGstqlaafeevGdkLsrtaaaCGfrWnaevrkk 58 
                 +r+d +++eed ++ e v  h  + s        v     rt  a   rWn++vrk 
  MMETSP1137-20121227|8528_1 146 VRKDTFSEEEDRMILEAVAVHGTKWSLI------VKMIPGRTDNAIKNRWNSTVRKV 196
                 7999999999999999998875444433......3334579**************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (355 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        78  (0.0190151); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.27u 0.15s 00:00:00.42 Elapsed: 00:00:00.36
# Mc/sec: 1301.56
//
Query:       MMETSP1137-20121227|8529_1  [L=291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.038   11.4   0.0       0.24    8.8   0.0    2.0  2  TIGR01262 maiA: maleylacetoacetate isomerase


Domain annotation for each model (and alignments):
>> TIGR01262  maiA: maleylacetoacetate isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   0.0   5.9e-05      0.24      53      80 ..      96     122 ..      92     147 .. 0.78
   2 ?    0.3   0.0     0.024        98     134     170 ..     158     196 ..     135     245 .. 0.64

  Alignments for each domain:
  == domain 1    score: 8.8 bits;  conditional E-value: 5.9e-05
   TIGR01262  53 PtLkidegevltqSlAiieyLeetypep 80 
                 P+++++ + vl+qS Ai +yL e++   
  MMETSP1137-20121227|8529_1  96 PIIQDG-DLVLSQSTAICMYLGEKVGFA 122
                 555555.7**************987655 PP

  == domain 2    score: 0.3 bits;  conditional E-value: 0.024
   TIGR01262 134 wiekG.laalEellk.ekagafcvGdevtladvcLvpqv 170
                 +i+ G +aal + ++ +  g +  G+++t  d +Lv  +
  MMETSP1137-20121227|8529_1 158 LIDGGrFAALLSNIErQVVGPHYYGEKMTYLDFYLVTVF 196
                 555555677766666577788888888888888888653 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (291 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        94  (0.0229157); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.25u 0.15s 00:00:00.40 Elapsed: 00:00:00.48
# Mc/sec: 800.18
//
Query:       MMETSP1137-20121227|8530_1  [L=551]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (551 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        78  (0.0190151); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.16s 00:00:00.51 Elapsed: 00:00:00.31
# Mc/sec: 2346.00
//
Query:       MMETSP1137-20121227|8531_1  [L=163]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (163 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        98  (0.0238908); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.14s 00:00:00.31 Elapsed: 00:00:00.28
# Mc/sec: 741.87
//
Query:       MMETSP1137-20121227|8532_1  [L=209]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (209 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        70  (0.0170648); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.17s 00:00:00.36 Elapsed: 00:00:00.41
# Mc/sec: 672.82
//
Query:       MMETSP1137-20121227|8533_1  [L=207]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (207 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        88  (0.0214529); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.16s 00:00:00.34 Elapsed: 00:00:00.35
# Mc/sec: 780.62
//
Query:       MMETSP1137-20121227|8534_1  [L=399]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      4e-18   63.8   0.0    1.1e-14   52.5   0.0    2.1  2  TIGR01250 pro_imino_pep_2: proline-specific peptidases
    5.9e-11   39.9   0.0      5e-10   36.8   0.0    2.3  2  TIGR01249 pro_imino_pep_1: prolyl aminopeptidase
    1.2e-07   29.2   0.2    0.00028   18.2   0.0    2.6  3  TIGR02427 protocat_pcaD: 3-oxoadipate enol-lactonase
    4.5e-07   27.6   0.0    0.00018   19.1   0.0    2.3  2  TIGR01738 bioH: putative pimeloyl-BioC--CoA transferase BioH
    5.8e-05   20.5   0.0     0.0012   16.2   0.0    2.1  2  TIGR03695 menH_SHCHC: 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase
    7.5e-05   19.7   1.3     0.0084   13.0   0.0    2.7  3  TIGR03056 bchO_mg_che_rel: putative magnesium chelatase accessory protein
    0.00033   17.8   0.0    0.00053   17.1   0.0    1.3  1  TIGR03343 biphenyl_bphD: 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase
     0.0004   17.4   0.0     0.0011   15.9   0.0    1.6  2  TIGR01392 homoserO_Ac_trn: homoserine O-acetyltransferase
    0.00041   17.3   0.0     0.0053   13.6   0.0    2.0  2  TIGR01836 PHA_synth_III_C: poly(R)-hydroxyalkanoic acid synthase, class III, PhaC subunit
     0.0029   14.8   0.0     0.0074   13.5   0.0    1.7  1  TIGR03611 RutD: pyrimidine utilization protein D
     0.0061   13.8   0.1      0.015   12.5   0.0    1.6  2  TIGR02240 PHA_depoly_arom: poly(3-hydroxyalkanoate) depolymerase


Domain annotation for each model (and alignments):
>> TIGR01250  pro_imino_pep_2: proline-specific peptidases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.5   0.0   2.9e-17   1.1e-14      21     128 ..      81     204 ..      61     211 .. 0.82
   2 !    9.2   0.0   0.00048      0.18     216     270 ..     315     372 ..     309     385 .. 0.82

  Alignments for each domain:
  == domain 1    score: 52.5 bits;  conditional E-value: 2.9e-17
   TIGR01250  21 eegekikllvlHGGPgss.heyleslkellke...gvevilYDQLGsgkSdqPddsd.............eklltidrfvdEleevrekLaldkfyllgqSwGglLaqeYalkyqqhlkgliiss 128
                 + ++  ++l++HGGP+ +  ++++  +el+      +++++  Q G+g+S++P   +             e+ l i   ++++e  r++L++d++ l+g+S+Gg +a  Ya ++++ +k+l++  
  MMETSP1137-20121227|8534_1  81 GPDNACPVLCIHGGPAAPpLQQWKVAEELAVLcpdAMKLHFMHQRGCGHSSRPFA-KwpsagmwpglxtvEQTLGIGEQIADIERARRRLGVDQLVLVGHSFGGFMATLYAAEFPHAVKALVLIA 204
                 455678*********975256666655554333349*****************65.569999**999999889999999******************************************9865 PP

  == domain 2    score: 9.2 bits;  conditional E-value: 0.00048
   TIGR01250 216 gklkdw..ditdklkeIkvPtLltvgefdemtpeaaremqekiaksrlvvfe.dgshl 270
                 g+ +d+  +++d+l++ + P  ++ g+ d m+p+  + + +  +++++ + e dg+h 
  MMETSP1137-20121227|8534_1 315 GREHDYrkQLRDRLQHSAFPVAIVHGTKDIMPPSSSQDYGDLFPSGHVSFHEvDGGHF 372
                 56666633579**********************************9999987456664 PP

>> TIGR01249  pro_imino_pep_1: prolyl aminopeptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.8   0.0   1.3e-12     5e-10      23     126 ..      81     203 ..      71     211 .. 0.77
   2 ?   -1.0   0.0      0.43   1.6e+02     249     293 ..     332     376 ..     319     389 .. 0.68

  Alignments for each domain:
  == domain 1    score: 36.8 bits;  conditional E-value: 1.3e-12
   TIGR01249  23 GnPdGkPvvflhGGPGsGtde.....ecrkffdpevyrivlldqrGaGks.kphaileenttw.............dlvadieklreklkikkWlvfGGsWGstlalayaqkhPekvtklvlr 126
                 G  +  Pv+ +hGGP +   +     e +    p+ +++ ++ qrG+G+s +p+a       w             + +adie+ r++l++ +  + G s+G  +a  ya + P+ v+ lvl 
  MMETSP1137-20121227|8534_1  81 GPDNACPVLCIHGGPAAPPLQqwkvaEELAVLCPDAMKLHFMHQRGCGHSsRPFAKWPSAGMWpglxtveqtlgigEQIADIERARRRLGVDQLVLVGHSFGGFMATLYAAEFPHAVKALVLI 203
                 666789**********986551111144567789**************8637888765554443222222222233569******************************************95 PP

  == domain 2    score: -1.0 bits;  conditional E-value: 0.43
   TIGR01249 249 niktvivqGrydlvcPlqsalalkkafPeaelkvvq.daGhsasdp 293
                   ++ iv+G  d++ P  s+ +    fP  ++   + d Gh   + 
  MMETSP1137-20121227|8534_1 332 AFPVAIVHGTKDIMPP-SSSQDYGDLFPSGHVSFHEvDGGHFVIEG 376
                 457899****998877.56678888888877766542566765554 PP

>> TIGR02427  protocat_pcaD: 3-oxoadipate enol-lactonase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0       1.6   5.8e+02     194     218 ..      86     108 ..      77     131 .. 0.64
   2 !   18.2   0.0   7.5e-07   0.00028      57     114 ..     150     207 ..     145     213 .. 0.90
   3 !    8.3   0.0   0.00076      0.28     184     246 ..     323     386 ..     311     391 .. 0.80

  Alignments for each domain:
  == domain 1    score: -2.5 bits;  conditional E-value: 1.6
   TIGR02427 194 vPtlviaGdeDgstPpelvreiadl 218
                  P+l+i G   +++Pp +  ++a+ 
  MMETSP1137-20121227|8534_1  86 CPVLCIHGG--PAAPPLQQWKVAEE 108
                 689999885..56676654444433 PP

  == domain 2    score: 18.2 bits;  conditional E-value: 7.5e-07
   TIGR02427  57 egpysiedladdvlallDalgiekaavcGlSlGGliaqaLaarrpdrvealvlsntaa 114
                 e++ +i++   d+ +   +lg+++ +++G S GG +a   aa+ p  v+alvl++ aa
  MMETSP1137-20121227|8534_1 150 EQTLGIGEQIADIERARRRLGVDQLVLVGHSFGGFMATLYAAEFPHAVKALVLIAPAA 207
                 56678889999999999************************************99887 PP

  == domain 3    score: 8.3 bits;  conditional E-value: 0.00076
   TIGR02427 184 dlrerleeiavPtlviaGdeDgstPpelvreiadlvpga..rfaeieeaaHlpnleqpeafaall 246
                 +lr+rl++ a P+ ++ G++D+  Pp++ ++  dl p +  +f+e++++  +   e+++ +a+++
  MMETSP1137-20121227|8534_1 323 QLRDRLQHSAFPVAIVHGTKDIM-PPSSSQDYGDLFPSGhvSFHEVDGGHFVIEGESAKDVAKII 386
                 6899*****************85.88999999999997622578898555566677777777665 PP

>> TIGR01738  bioH: putative pimeloyl-BioC--CoA transferase BioH
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.0   4.8e-07   0.00018      65     103 ..     172     210 ..     151     258 .. 0.89
   2 !    6.2   0.0     0.004       1.5     177     211 ..     321     354 ..     310     376 .. 0.78

  Alignments for each domain:
  == domain 1    score: 19.1 bits;  conditional E-value: 4.8e-07
   TIGR01738  65 akaiwlGWsLGGLvalhlalthpdkvrsLvlvasspkfa 103
                 ++ +++G s GG +a+  a+++p+ v++Lvl+a ++ ++
  MMETSP1137-20121227|8534_1 172 DQLVLVGHSFGGFMATLYAAEFPHAVKALVLIAPAAVLT 210
                 45799****************************998876 PP

  == domain 2    score: 6.2 bits;  conditional E-value: 0.004
   TIGR01738 177 evDlRralqkisvPvLrlyGqkDalvPakvveald 211
                 +  lR+ lq+   Pv  ++G+kD + P+ + ++  
  MMETSP1137-20121227|8534_1 321 RKQLRDRLQHSAFPVAIVHGTKDIMPPSSS-QDYG 354
                 5679*******************7766554.4444 PP

>> TIGR03695  menH_SHCHC: 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0   3.1e-06    0.0012      58     102 ..     160     203 ..     148     210 .. 0.86
   2 ?    1.9   0.0      0.07        26     185     206 ..     322     343 ..     309     386 .. 0.84

  Alignments for each domain:
  == domain 1    score: 16.2 bits;  conditional E-value: 3.1e-06
   TIGR03695  58 qellkelleklkiekviLvGYSlGGRialalaleaperleglile 102
                  + +++  ++l+ ++++LvG S GG +a+ +a+e+p+ +++l+l 
  MMETSP1137-20121227|8534_1 160 AD-IERARRRLGVDQLVLVGHSFGGFMATLYAAEFPHAVKALVLI 203
                 45.56778899*******************************996 PP

  == domain 2    score: 1.9 bits;  conditional E-value: 0.07
   TIGR03695 185 pslweklkelklpvlylvGekD 206
                  +l+++l+++++pv +++G kD
  MMETSP1137-20121227|8534_1 322 KQLRDRLQHSAFPVAIVHGTKD 343
                 5688999**************9 PP

>> TIGR03056  bchO_mg_che_rel: putative magnesium chelatase accessory protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.1       1.2   4.5e+02      79     101 ..       5      27 ..       3      29 .. 0.84
   2 !    4.9   0.1    0.0065       2.4      87     138 ..     164     216 ..     148     229 .. 0.82
   3 !   13.0   0.0   2.2e-05    0.0084     211     276 ..     323     389 ..     308     391 .. 0.82

  Alignments for each domain:
  == domain 1    score: -2.5 bits;  conditional E-value: 1.2
   TIGR03056  79 kamaedlakllaaedlsPdaviG 101
                 ++m+ +la+l aa  ++ ++ iG
  MMETSP1137-20121227|8534_1   5 RPMSAALAALAAAAAVAIAVYIG 27 
                 68999999999999999888888 PP

  == domain 2    score: 4.9 bits;  conditional E-value: 0.0065
   TIGR03056  87 kllaaedlsPdaviGhsaGaaialrlaldlpvrPravvgin.aaldnfeGvaG 138
                 +    +++   +++Ghs G+ +a   a + p   +a+v i  aa+  ++ vaG
  MMETSP1137-20121227|8534_1 164 RARRRLGVDQLVLVGHSFGGFMATLYAAEFPHAVKALVLIApAAVLTLPPVAG 216
                 555667788889*****************999999999996467788888887 PP

  == domain 3    score: 13.0 bits;  conditional E-value: 2.2e-05
   TIGR03056 211 plqralpriavPvlliageedkavppdvskeaatrlpla..tlrevpGlGhlvhe.edadgvaglilda 276
                  l+ +l+  a Pv ++ g +d  +pp+ s++    +p +  +++ev+G Gh+v e e+a+ va +i   
  MMETSP1137-20121227|8534_1 323 QLRDRLQHSAFPVAIVHGTKD-IMPPSSSQDYGDLFPSGhvSFHEVDG-GHFVIEgESAKDVAKIIIST 389
                 688899999**********99.5899**********9864489*****.88776636778899888765 PP

>> TIGR03343  biphenyl_bphD: 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.0   1.4e-06   0.00053      98     137 ..     169     208 ..     160     246 .. 0.89

  Alignments for each domain:
  == domain 1    score: 17.1 bits;  conditional E-value: 1.4e-06
   TIGR03343  98 ldiekahlvgnsmggatalnfaleypdrlgklilmgpggl 137
                 l++++  lvg s+gg  a  +a e+p+ ++ l+l+ p+ +
  MMETSP1137-20121227|8534_1 169 LGVDQLVLVGHSFGGFMATLYAAEFPHAVKALVLIAPAAV 208
                 8999*********************************975 PP

>> TIGR01392  homoserO_Ac_trn: homoserine O-acetyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0     3e-06    0.0011     119     163 ..     164     207 ..     136     215 .. 0.87
   2 ?   -2.0   0.0      0.85   3.2e+02     277     335 ..     319     372 ..     311     386 .. 0.74

  Alignments for each domain:
  == domain 1    score: 15.9 bits;  conditional E-value: 3e-06
   TIGR01392 119 alldsLgveklaavvGgSlGGmqalewalsypervkkivvlatsa 163
                 +  ++Lgv++l + vG S+GG  a+ +a++ p +vk++v +a +a
  MMETSP1137-20121227|8534_1 164 RARRRLGVDQL-VLVGHSFGGFMATLYAAEFPHAVKALVLIAPAA 207
                 45578*****6.678**************************9876 PP

  == domain 2    score: -2.0 bits;  conditional E-value: 0.85
   TIGR01392 277 grrdslkealkkikapvlvvgiesDllftleeqeelakalkaakleyaeieseeGHDaF 335
                 ++r++l++ l++   pv +v  + D++ +++++++  + +++ +++++e++   GH  F
  MMETSP1137-20121227|8534_1 319 DYRKQLRDRLQHSAFPVAIVHGTKDIM-PPSSSQDYGDLFPSGHVSFHEVDG--GH--F 372
                 557788888899999999988888876.567888888999998888888753..55..5 PP

>> TIGR01836  PHA_synth_III_C: poly(R)-hydroxyalkanoic acid synthase, class III, PhaC subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   0.0   1.4e-05    0.0053     128     169 ..     164     205 ..     156     212 .. 0.89
   2 ?    1.3   0.0      0.08        30     291     342 ..     337     385 ..     326     391 .. 0.74

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 1.4e-05
   TIGR01836 128 kikrtseldkisllGiCqGGtfsliyaaLeedkiknLvtmvt 169
                   +r+  +d++ l G   GG ++ +yaa +++ +k Lv++++
  MMETSP1137-20121227|8534_1 164 RARRRLGVDQLVLVGHSFGGFMATLYAAEFPHAVKALVLIAP 205
                 55677789******************************9986 PP

  == domain 2    score: 1.3 bits;  conditional E-value: 0.08
   TIGR01836 291 niyaekDhlvapdaskaLkdlvssedktelsfktGhigivvsgkaqkevlpa 342
                  +  +kD +++p +s+   dl +s   + +++ +Gh   v+ g++ k+v   
  MMETSP1137-20121227|8534_1 337 IVHGTKD-IMPPSSSQDYGDLFPSGHVSFHEVDGGHF--VIEGESAKDVAKI 385
                 4444444.78899999999999999999999999996..5567777777655 PP

>> TIGR03611  RutD: pyrimidine utilization protein D
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   0.0     2e-05    0.0074      57     112 ..     149     204 ..     107     209 .. 0.91

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 2e-05
   TIGR03611  57 laedysiaalaadvlelldaldiekahvvGhalGgliglelalrkperlaklvlin 112
                 +++  +i +  ad+ ++  +l+++++ +vGh+ Gg+++   a + p+ ++ lvli 
  MMETSP1137-20121227|8534_1 149 VEQTLGIGEQIADIERARRRLGVDQLVLVGHSFGGFMATLYAAEFPHAVKALVLIA 204
                 6666677777789999999**********************************995 PP

>> TIGR02240  PHA_depoly_arom: poly(3-hydroxyalkanoate) depolymerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.5   0.0     4e-05     0.015      88     130 ..     169     211 ..     155     224 .. 0.86
   2 ?   -3.6   0.0       3.2   1.2e+03     238     261 ..     364     388 ..     360     391 .. 0.72

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 4e-05
   TIGR02240  88 ldygqvnvigvswggalaqqfahdyperckklvlaataagavm 130
                 l   q+  +g s+gg +a  +a ++p  +k lvl a aa   +
  MMETSP1137-20121227|8534_1 169 LGVDQLVLVGHSFGGFMATLYAAEFPHAVKALVLIAPAAVLTL 211
                 56678999***************************99986655 PP

  == domain 2    score: -3.6 bits;  conditional E-value: 3.2
   TIGR02240 238 lhviddghlflvt.raeavapiimk 261
                 +h +d gh+++    a+ va ii+ 
  MMETSP1137-20121227|8534_1 364 FHEVDGGHFVIEGeSAKDVAKIIIS 388
                 6889999977654257889999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (399 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       142  (0.0346173); expected 82.0 (0.02)
Passed bias filter:                      132  (0.0321794); expected 82.0 (0.02)
Passed Vit filter:                        22  (0.00536324); expected 4.1 (0.001)
Passed Fwd filter:                        11  (0.00268162); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.36u 0.17s 00:00:00.53 Elapsed: 00:00:00.93
# Mc/sec: 566.28
//
Query:       MMETSP1137-20121227|8535_1  [L=567]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (567 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       244  (0.0594832); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.14s 00:00:00.60 Elapsed: 00:00:00.47
# Mc/sec: 1592.29
//
Query:       MMETSP1137-20121227|8536_1  [L=263]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00061   16.7   0.0     0.0011   15.9   0.0    1.4  1  TIGR01622 SF-CC1: splicing factor, CC1-like family


Domain annotation for each model (and alignments):
>> TIGR01622  SF-CC1: splicing factor, CC1-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   2.6e-07    0.0011     214     342 ..     115     234 ..      98     250 .. 0.76

  Alignments for each domain:
  == domain 1    score: 15.9 bits;  conditional E-value: 2.6e-07
   TIGR01622 214 pnsiadlkLYvGnlhfnitEqeLrqiFepFGeielvqlqkDpetGrskGyGFiqFsdaeeakeAleklNGlelAGReikvglasDvteesdaslaskfedsfdeseqsgldlnteereqldekldrdde 342
                 p  ++  ++ v nl f+ t  +L   Fe  G+i++++l++            + F     a  A +k  G  l GR + v la +  +  +a   ++ ed +d+ +  g +  +++++ +    ++dd 
  MMETSP1137-20121227|8536_1 115 P--MPVARVLVSNLAFETTSASLTRFFEGCGQILQIELPQTHRF---NRAAHVVFASEADALLAVQK-SGSKLEGRRVVVVLAPEDGDFATA--TQSRED-VDKLAIYGYKSVGRGNKFFGTVFADDDA 234
                 3..67889999999999999999999999999999999765555...55578889888888888766.799999999999998777777777..677777.7888888888888777777777776665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (263 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        91  (0.0221843); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.23u 0.12s 00:00:00.35 Elapsed: 00:00:00.36
# Mc/sec: 964.25
//
Query:       MMETSP1137-20121227|8537_1  [L=56]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        42  (0.0102389); expected 82.0 (0.02)
Passed bias filter:                       39  (0.00950756); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.13s 00:00:00.24 Elapsed: 00:00:00.24
# Mc/sec: 307.97
//
Query:       MMETSP1137-20121227|8538_1  [L=424]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (424 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       109  (0.0265724); expected 82.0 (0.02)
Passed bias filter:                      103  (0.0251097); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.18s 00:00:00.51 Elapsed: 00:00:01.05
# Mc/sec: 532.98
//
Query:       MMETSP1137-20121227|8539_1  [L=840]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.4e-78  261.3   7.6    1.3e-76  256.1   0.2    2.2  2  TIGR02350 prok_dnaK: chaperone protein DnaK
    1.9e-65  219.3   0.5    1.9e-64  216.1   0.2    2.1  2  TIGR01991 HscA: Fe-S protein assembly chaperone HscA
    1.3e-08   32.2   0.3    1.1e-07   29.1   0.0    2.2  2  TIGR00904 mreB: cell shape determining protein, MreB/Mrl family
    0.00063   17.1   0.2      0.012   12.9   0.1    2.3  2  TIGR02529 EutJ: ethanolamine utilization protein EutJ family protein


Domain annotation for each model (and alignments):
>> TIGR02350  prok_dnaK: chaperone protein DnaK
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  256.1   0.2   1.3e-79   1.3e-76       2     385 ..       3     395 ..       2     409 .. 0.91
   2 !    8.1   1.4   0.00016      0.16     483     589 ..     582     692 ..     577     701 .. 0.72

  Alignments for each domain:
  == domain 1    score: 256.1 bits;  conditional E-value: 1.3e-79
   TIGR02350   2 iiGidLGttnsvvavleggepvvianaeGarttPsvvafkkdgerlvGelakrqavtnpentivsikrliGrkle..eveeeakkvpykvveaenevk..vevedke..ytpeeisaeiLqklkkda..eaylGekvteavitvPayfndaqrqatkdaGkiaGlevlriinePtaaaLayGldke....kkdekilvfdlGGGtfdvsilelgdgvfevkstaGdtkLGGddfdekiidylaeefkkeegidLskdkmalqrlkeaaekakieLssaleteinlpfitadasgpkhlelkltrakfeelvedlvertkepvkkalkdaklsaseidevilvGGstriPavqelvkelvgkepnksvnPdevvaiGaaiqggvlkge..vkdvlLldv 385
                  +Gid+G +n+vva+   g   v+ n+  ++ tP +++f+ + er  Ge+a   +  n  nti+ +k +iG+k++  e+++e+ +v+yk++++  +v   v+ +d+e  ++pe   +++L+ ++k a  e+  G +v++ v+ vPayf + +r+a  da +i Gl+vlr++ + taaaL+yG+ k+    +k ++++  d+G      s++ + +g + v+sta d +LGG dfde++ ++ a+e+k+++ id +++k+a  rl  aaek k+ Ls++ ++ i++     d    ++++  + r  f +l+e+lv + ++ +++a+++++ls ++i++v + GGs riPavq ++++++gk   k+ n de++a G a+q ++l+    v+d  ++d 
  MMETSP1137-20121227|8539_1   3 CVGIDIGFANAVVAIARRGGIDVLDNEVSKKNTPCMIGFSGK-ERKLGEQALTGITSNMTNTITGVKAVIGKKFHsdEIQQEIPRVAYKMIDVAGNVGipVQYNDEElvLSPERAMSMLLRCMQKIAakEHAAGVEVKDVVLSVPAYFTECERRAMLDAAQIVGLNVLRLMTDVTAAALSYGIYKTdlptDKTTNVVFVDMGALDTTCSVVAFVKGKLTVLSTACDRHLGGRDFDEELAKHXAAEWKEKHKIDATTNKKAWFRLMTAAEKTKKVLSANPKAPISIECFMDD----IDVKGMMERDVFLQLCEPLVAKLQKLLEAAFNESGLSMDDIHSVEIFGGSVRIPAVQSTIENFFGKPCMKTQNFDECIAKGCALQCAMLSPAfrVRDFSVVDA 395
                 59***************************************9.9999*************************987669*************99886551156666653369*************998445678**************************************************9974433566778888999998899****************************************************************************9977654....5677889999*******************************************************************************98666888888875 PP

  == domain 2    score: 8.1 bits;  conditional E-value: 0.00016
   TIGR02350 483 atgkeqsiti...tassglseeeiermvkeaeanaeedkkkkeevearneadsliyqaektlkeagdk.leeeekekiekaveelkealkeedveekikakteelekalek 589
                 +t+k +++++   ++s gls++e+    +   + + +d+  +e+++a n ++s iy++++ l+   ++ ++e+eke++  +++++++ l e+ ++++ ++  ++l + l  
  MMETSP1137-20121227|8539_1 582 KTKKVKRVNLpvsDKSVGLSSREMMDAQEAEGKMSIQDRIIQETADAMNALESRIYSMRDDLSIRYASfVSEAEKESLMPMLTSMEDWLYEDGADADKATYEAKLAELLDA 692
                 4555555443222356689999987765444466789*************************976655489999************9998887766555555555554444 PP

>> TIGR01991  HscA: Fe-S protein assembly chaperone HscA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  216.1   0.2   1.8e-67   1.9e-64       2     367 ..       4     386 ..       3     403 .. 0.90
   2 ?    0.9   0.0     0.025        26     438     477 ..     477     521 ..     474     524 .. 0.73

  Alignments for each domain:
  == domain 1    score: 216.1 bits;  conditional E-value: 1.8e-67
   TIGR01991   2 vGiDlGttnslvaavregkaevlkdeegrvllpsvvryleegkvevGkeakeaaaedpkntiisvkRlmGrs..ledvkkeaeelpyeledakgem.vrlktaqg..evtPvevsaeiLkklkkra..eealgkelkgavitvPAYFddaqrqatkdAarlaglnvlRLlnePtaAAvAYGldk.....aseglyavYDLGGGtFDvsiLklekGvFevlatgGdsaLGGDDfDralaklil....kkagleaelskeekkellkaaraakeaLtdaeevevevkl..egkdlkaklsreeleelieelvkktleivrralrdaglkveeikevvlvGGstrvplvrqavaelFkkepltdldPdevvAlGAalqadlLaknkr 367
                 vGiD+G  n++va  r+g + vl +e  +   p ++ +  + + ++G++a + ++++ +nti+ vk ++G+    +++++e  +  y++ d  g++ + ++ +++   ++P    + +L+ ++k a  e+a g e+k +v+ vPAYF + +r+a+ dAa++ glnvlRL+ + taAA+ YG+ k      + + ++  D+G      s++ + kG   vl+t+ d +LGG DfD+ lak+      +k++++a+++k+    l++aa+++k+ L+++ ++ ++++   ++ d+k  ++r+ + +l e+lv k  +  ++a++++gl++++i++v + GGs r+p+v+++++++F+k  +++ + de +A G alq  +L+   r
  MMETSP1137-20121227|8539_1   4 VGIDIGFANAVVAIARRGGIDVLDNEVSKKNTPCMIGFSGK-ERKLGEQALTGITSNMTNTITGVKAVIGKKfhSDEIQQEIPRVAYKMIDVAGNVgIPVQYNDEelVLSPERAMSMLLRCMQKIAakEHAAGVEVKDVVLSVPAYFTECERRAMLDAAQIVGLNVLRLMTDVTAAALSYGIYKtdlptDKTTNVVFVDMGALDTTCSVVAFVKGKLTVLSTACDRHLGGRDFDEELAKHXAaewkEKHKIDATTNKKAWFRLMTAAEKTKKVLSANPKAPISIECfmDDIDVKGMMERDVFLQLCEPLVAKLQKLLEAAFNESGLSMDDIHSVEIFGGSVRIPAVQSTIENFFGKPCMKTQNFDECIAKGCALQCAMLSPAFR 386
                 8**************************************99.99***************************732568***********988877422444444444489*************9988323567789***********************************************9988875555666667999999999********************************99877766777788899999999***************9998887755599****************************************************************************************986555 PP

  == domain 2    score: 0.9 bits;  conditional E-value: 0.025
   TIGR01991 438 rFeLrgippmaA..G...aarirvtfqvDadGllsvsaqekltgv 477
                  F++++ip+ +   G   aa+i+v+ ++D  G l+++   ++ ++
  MMETSP1137-20121227|8539_1 477 EFTVSDIPSRVGadGkpeAAKIKVKLRLDIHGCLQIESAQAIEEI 521
                 5778888876531223338****************9887766665 PP

>> TIGR00904  mreB: cell shape determining protein, MreB/Mrl family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.0     0.054        55       5      22 ..       4      21 ..       1      31 [. 0.84
   2 !   29.1   0.0   1.1e-10   1.1e-07      80     323 ..     117     375 ..     108     383 .. 0.79

  Alignments for each domain:
  == domain 1    score: 0.5 bits;  conditional E-value: 0.054
   TIGR00904  5 lgidlGtantlvyvkgkG 22
                +gid+G an++v + ++G
  MMETSP1137-20121227|8539_1  4 VGIDIGFANAVVAIARRG 21
                89**********999887 PP

  == domain 2    score: 29.1 bits;  conditional E-value: 1.1e-10
   TIGR00904  80 ekmlkyfikkvlkrksllkpk...vlicvPsgiteverravkesaksaGarevylieeplaaaiG.....adlPveeptgsmvvdiGGGttevavisl.gG..ivvsksi..rvaGdeldeaiikyirrkyn..lliGertaekikieiGsayaeendeeeklevkGrdlvtGlprtleldskevlealkepvseiveavkstlektpPelaadive.rGivltGGGallknldkllsketklpvivaedpllavalGtG 323
                  +ml   ++k+  +++    +   v+++vP+  te erra+ ++a+  G +   l+ +  aaa+      +dlP  ++t  + vd+G   t  +v+++ +G   v s +    ++G ++de + k+   +++    i  +t  k   ++ +a  + ++++ + + k    ++    ++ ++ ++ ++ + +  + +v+++++ le++  e    + + + + + GG   +  ++ ++++  + p + +++  +++a+G  
  MMETSP1137-20121227|8539_1 117 MSMLLRCMQKIAAKEHAAGVEvkdVVLSVPAYFTECERRAMLDAAQIVGLNVLRLMTDVTAAALSygiykTDLPTDKTTNVVFVDMGALDTTCSVVAFvKGklTVLSTACdrHLGGRDFDEELAKHXAAEWKekHKIDATTNKKAWFRLMTAAEK-TKKVLSANPKAPISIECFMDDIDVKGMMERDVFLQLCEPLVAKLQKLLEAAFNESGLSMDDiHSVEIFGGSVRIPAVQSTIENFFGKPCMKTQNFDECIAKGCA 375
                 5677777777776655433322369**************************************8533444689***************999999998524533456665543689***********98877522578999999999999998886.57888999999999999999999999999999999999999999999999988865555551345566777789999999999999999999999999999976 PP

>> TIGR02529  EutJ: ethanolamine utilization protein EutJ family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.9   0.1   1.2e-05     0.012      52     184 ..     129     274 ..     105     290 .. 0.74
   2 ?    1.5   0.0     0.035        36     168     226 ..     300     364 ..     284     370 .. 0.76

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 1.2e-05
   TIGR02529  52 klekklGieltkaaiavPPGveegdkkvivnvvesaGlevlkvldePtaaaavlql..........kngavvdvGGGttGisi..lkkGkviy...sadeatGGthlslvlaGaykisleeaeekkkekkkeeevfsvvkPvvekmae 184
                   e+  G+e++    +vP   +e + +++++  +  Gl+vl+ + + taaa    +          +n + vd+G   t  s+  + kGk++    + d   GG ++   la +   +++e    k +   +++ +  +   +ek  +
  MMETSP1137-20121227|8539_1 129 AKEHAAGVEVKDVVLSVPAYFTECERRAMLDAAQIVGLNVLRLMTDVTAAALSYGIyktdlptdktTNVVFVDMGALDTTCSVvaFVKGKLTVlstACDRHLGGRDFDEELAKHXAAEWKEKH--KIDATTNKKAWFRLMTAAEKTKK 274
                 347889********************************************9876653333343333577889***987777772256999764222459999*****9999988877766554..44444555566666566666655 PP

  == domain 2    score: 1.5 bits;  conditional E-value: 0.035
   TIGR02529 168 eeevf.svvkPvvekmaeivkkhiekq.....kvkdlylvGGassfsefedvfekelglevikpa 226
                 e++vf ++ +P+v k+ ++++  ++++     +++++ + GG+  ++ +++++e+ +g++ +k++
  MMETSP1137-20121227|8539_1 300 ERDVFlQLCEPLVAKLQKLLEAAFNESglsmdDIHSVEIFGGSVRIPAVQSTIENFFGKPCMKTQ 364
                 5566624568999999999988877652212256677789***************9999988876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (840 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       237  (0.0577767); expected 82.0 (0.02)
Passed bias filter:                       97  (0.023647); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.65u 0.18s 00:00:00.83 Elapsed: 00:00:00.49
# Mc/sec: 2262.67
//
Query:       MMETSP1137-20121227|8540_1  [L=255]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (255 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        97  (0.023647); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.12s 00:00:00.34 Elapsed: 00:00:00.40
# Mc/sec: 841.43
//
Query:       MMETSP1137-20121227|8541_1  [L=688]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0053   13.0   0.0      0.016   11.5   0.0    1.7  1  TIGR03788 marine_srt_targ: marine proteobacterial sortase target protein


Domain annotation for each model (and alignments):
>> TIGR03788  marine_srt_targ: marine proteobacterial sortase target protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.5   0.0   3.8e-06     0.016     251     384 ..      24     179 ..      14     263 .. 0.73

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 3.8e-06
   TIGR03788 251 eeyllvlllPPeeaaaaqslk.RevvfviDtsGsma.........gesieq.......AksalllalsqLkpkDrfnvieFdsdvellfkkavpAtaenlerArqfvagLqAdGGtEmaeaLeaale......daaseesgalrqvvFltDGavgnE 384
                 ++ l+ +l+PP+++  +  +      fviD sGsm+         g+ ++         k++ ++ +  L ++D + ++ + ++++ + + +   ++  ++rA + v+gL+ d  t++++ L++ ++       +++  +++   ++  tDG  + E
  MMETSP1137-20121227|8541_1  24 DDTLMCTLVPPQTKPGSIGVTcGAYCFVIDVSGSMNiaasvttddGDKVNHgwsqldiGKHSTNTFIASLGSEDFVCLVTYSDAASVVLDWT-RCDEAGIARATEAVNGLRPDRRTNLMAGLNTGFKqllalpVDDADLHRYALDMIVTTDGMPSAE 179
                 56788999***888888877757899*********7422222222222222111122257888888999999**999999999988877655.66788899*****************999998777666666566666667777888899977666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (688 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        72  (0.0175524); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.17s 00:00:00.64 Elapsed: 00:00:00.50
# Mc/sec: 1816.17
//
Query:       MMETSP1137-20121227|8542_1  [L=478]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (478 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        75  (0.0182838); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.16s 00:00:00.49 Elapsed: 00:00:00.52
# Mc/sec: 1213.28
//
Query:       MMETSP1137-20121227|8543_1  [L=119]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (119 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        67  (0.0163335); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.15s 00:00:00.30 Elapsed: 00:00:00.55
# Mc/sec: 285.58
//
Query:       MMETSP1137-20121227|8544_1  [L=272]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (272 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       317  (0.0772794); expected 82.0 (0.02)
Passed bias filter:                      128  (0.0312043); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.16s 00:00:00.42 Elapsed: 00:00:00.37
# Mc/sec: 970.30
//
Query:       MMETSP1137-20121227|8545_1  [L=303]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.026   11.2   0.0      0.038   10.6   0.0    1.2  1  TIGR02928 TIGR02928: orc1/cdc6 family replication initiation protein


Domain annotation for each model (and alignments):
>> TIGR02928  TIGR02928: orc1/cdc6 family replication initiation protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   9.3e-06     0.038      52     124 ..     130     202 ..     114     207 .. 0.94

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 9.3e-06
   TIGR02928  52 GKtavtkkvlkeleeaaeekdvrvstvyvnCqelsteyqvlvelvnqlaeseeevpetGlstkevfeelvkel 124
                 G tav++k+  ++++a  +  ++ +t++   +   t ++++ + +    + e +v ++G+s++ vfe++   l
  MMETSP1137-20121227|8545_1 130 GSTAVAQKFAAMAKKALAQPRDATATASAAPAAAATTTAAVTTAAAAADRPELSVRQEGFSSSSVFEQMATNL 202
                 88***************999999*************************99******************98776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (303 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       211  (0.0514383); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.26u 0.17s 00:00:00.43 Elapsed: 00:00:00.42
# Mc/sec: 952.21
//
Query:       MMETSP1137-20121227|8546_1  [L=355]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.96    4.8  14.9       0.66    5.3   9.0    1.5  1  TIGR02169 SMC_prok_A: chromosome segregation protein SMC


Domain annotation for each model (and alignments):
>> TIGR02169  SMC_prok_A: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   9.0   0.00016      0.66     354     465 ..      10     119 ..       3     131 .. 0.74

  Alignments for each domain:
  == domain 1    score: 5.3 bits;  conditional E-value: 0.00016
   TIGR02169 354 eklkeelkelkeeleelraeleevdkeaaelreelkelkekleklkeelnelkreldrlleelkrleeelaelkaelerieekiaeleeeleelaeeikkaeqkleqlkedl 465
                 ++++ el++ ++e++  ++e+++ d+ea +lre+l++l+ + e++ ++   lkr +++   +  r+ +  ++++  le   +++a+ e+ l+e+ + i++ e ++ +lk++ 
  MMETSP1137-20121227|8546_1  10 NNISVELQAXRAEEDSWKREAAKADEEATALRERLAALRVQNESALQRVAILKRRHSKA--QVTRQASGAEDAEVRLEVRAQRQAAAEALLKEVGKTIAAYELQVDKLKAQA 119
                 55667788888888888888888888888888888888888888888888888777776..555666666777777777777778888888888888888888887777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (355 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       223  (0.0543637); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.17s 00:00:00.50 Elapsed: 00:00:00.84
# Mc/sec: 557.81
//
Query:       MMETSP1137-20121227|8547_1  [L=302]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.9e-15   54.4   9.0    4.3e-15   53.8   6.2    1.2  1  TIGR03753 blh_monoox: beta-carotene 15,15'-monooxygenase, Brp/Blh family


Domain annotation for each model (and alignments):
>> TIGR03753  blh_monoox: beta-carotene 15,15'-monooxygenase, Brp/Blh family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.8   6.2   1.1e-18   4.3e-15       3     172 ..      90     259 ..      88     265 .. 0.78

  Alignments for each domain:
  == domain 1    score: 53.8 bits;  conditional E-value: 1.1e-18
   TIGR03753   3 allavlllGlpHGAlDhliaarl........gkkrkkrslakflllYlllaalvlalwlvaPvlaLllFllisalHFGegdlealiaktraqralailvrGglvllvpllfhpeevaeifsalvglfalfvaelrlvlllivlllvllllllglkrkskrswrl.daaelllLlalfal 172
                 a++++ l+GlpHGA D  +a+          +  r  r +   ll Y+ + a+  ++  v+P++a+++Fl++sa H+G+++ +        + ++ +++ G+++++ ++l h+++   ++++l g  ++   + + + +l+ ++  +ll ++++ r ++ sw++ d+++ +lLla++al
  MMETSP1137-20121227|8547_1  90 AAVLLTLVGLPHGATDRRLALSIkgcigsstSAGRVDRCMGELLLYYASVXAAACMAIEVFPLTAMAAFLVVSAHHWGQSHGS--------RPSIRRTFLGASIIASIVLSHKSASLHLLQLLCGAXSNVLLQGVQIYGLVGAAGYALLSAAAVLR-RSVSWTArDVLKECLLLAAVAL 259
                 789999**********98877654332111133344455677889999999***************************99855........677888889***************************77777777777777777777766666666.6888888556666666666654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (302 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.24u 0.17s 00:00:00.41 Elapsed: 00:00:00.43
# Mc/sec: 926.99
//
Query:       MMETSP1137-20121227|8548_1  [L=70]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        23  (0.00560702); expected 82.0 (0.02)
Passed bias filter:                       23  (0.00560702); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.13s 00:00:00.25 Elapsed: 00:00:01.20
# Mc/sec: 76.99
//
Query:       MMETSP1137-20121227|8550_1  [L=107]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (107 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        54  (0.0131643); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.13s 00:00:00.29 Elapsed: 00:00:00.47
# Mc/sec: 300.49
//
Query:       MMETSP1137-20121227|8551_1  [L=491]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.9e-99  331.1   0.0    2.2e-99  330.9   0.0    1.0  1  TIGR03026 NDP-sugDHase: nucleotide sugar dehydrogenase


Domain annotation for each model (and alignments):
>> TIGR03026  NDP-sugDHase: nucleotide sugar dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  330.9   0.0  5.3e-103   2.2e-99       2     413 .]      31     465 ..      30     465 .. 0.92

  Alignments for each domain:
  == domain 1    score: 330.9 bits;  conditional E-value: 5.3e-103
   TIGR03026   2 kiavvGlGYvGlplaallaek..gheVvgvDidkekveklnkgkspikepgleellkkalkkgrlrattdieeaikeadviiitVpTplkkeg.....eldlsavesaaeeiakvlkk..ga...ivvlkSTvppgtteevvkpileklsglklgedfevavnPEflreGnavedllnpdriviG.....eteeaseavaelYesiiekavvlvtsietAeliKlaeNtfravkiafiNelariceklgidvkevieaagldprigknflrpGlGvGGsClpkDplaLlakakelgve..aelieaareiNdsqpervvekvkkal.kklkgkkvlvlGlafKantdDvReSpaldiiekLkekgakvkayDPlveeeev....kaaesee.......vsdleealkeadavviltehsefkeldlekiks.lkkaklvvdtrn 413
                 ki+ +G+GYvG p++ ++a k   ++V++ D++++++++ n+ + pi+epgl+e++++a + ++l ++tdi+ ai+e+++i+++V+Tp+kk+g     ++dl++ e aa++ia+v++   ++   i+v kSTvp++t + ++k + ++++    g df+v +nPEfl eG+a+ dl++pdr+ +G     + ++a e +a++Y++ + + +vl+t++ +Ael Kl++N+f+a +i+ iN ++ +ce+ g++v ev +a+g d rig +fl++++G+GGsC+ kD+l L++  ++ g +  ae  +++  +Nd q++r ++++ +a+ ++++gkk+++lG+afK++t D+Re+pa+d+ ++L ++ ak+++yDP+v+ e++        +          +d + a+++a+a+ ilte++efk ld+++i + ++k ++v+d+rn
  MMETSP1137-20121227|8551_1  31 KICCLGAGYVGGPTMSVIAYKceDIKVTVCDLNERRIAAWNSSSLPIYEPGLQEVVETA-RGRNLFFSTDIDAAIRECTIIFVSVNTPTKKSGigageAADLTYWELAARRIAAVCNAssEKapkIIVEKSTVPVKTADAMAKVMAASCK----GIDFQVLSNPEFLAEGTAIDDLFKPDRVLVGgpvtpQGNAAVECLANVYRRWVPGPQVLTTNLWSAELSKLTANAFLAQRISSINSISALCEATGANVAEVSHAIGVDSRIGPKFLKASVGFGGSCFQKDILNLVYLCRSFGLPevAEYWHQVIVMNDYQKKRFATNMVSAMfNTVSGKKIAILGFAFKKDTGDTRETPAIDVCNSLLAESAKLAIYDPKVSREQIyedlG---K-DsmekiliEDDPYIACSNAHAIAILTEWDEFKTLDFKRIYDtMQKPAFVFDGRN 465
                 89***************998633789******************************999.6666**************************9866666689***************9985411466*****************88888876....69**************************88889655566777889*******99999************************************************************************************998778999***********999999888888**************************************************99964331...3.235678988999***************************99677778999*997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (491 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       131  (0.0319356); expected 82.0 (0.02)
Passed bias filter:                      110  (0.0268162); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.16s 00:00:00.51 Elapsed: 00:00:00.46
# Mc/sec: 1408.84
//
Query:       MMETSP1137-20121227|8552_1  [L=67]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (67 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        31  (0.00755729); expected 82.0 (0.02)
Passed bias filter:                       29  (0.00706972); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.14s 00:00:00.26 Elapsed: 00:00:00.26
# Mc/sec: 340.13
//
Query:       MMETSP1137-20121227|8553_1  [L=145]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.7e-32  109.6   1.2    3.3e-32  109.3   0.8    1.2  1  TIGR01038 L22_arch: ribosomal protein L22


Domain annotation for each model (and alignments):
>> TIGR01038  L22_arch: ribosomal protein L22
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  109.3   0.8   8.1e-36   3.3e-32       1     100 [.      21     122 ..      21     137 .. 0.97

  Alignments for each domain:
  == domain 1    score: 109.3 bits;  conditional E-value: 8.1e-36
   TIGR01038   1 YslkeedesksakasgrnlrvsfknavevarairGmkleeAkkyLedviekkravpfrRynkkvghrrgl..lgwtagRyPvkaakailklLknaeanAeak 100
                 Ys + e+ +ks+kasg++lrv+fkn+  +a ai+ m+l++AkkyLedv+e+k+a+pfr +n+ +g+++++  +  t+ R+P+k+ +++l+lLknae+nAe +
  MMETSP1137-20121227|8553_1  21 YSREAENSTKSCKASGSDLRVHFKNTCVTAAAIKKMQLKKAKKYLEDVLEHKQAIPFRFFNGCIGRHAQAkmTNATQCRWPKKSCEFLLHLLKNAESNAEVR 122
                 89999***************************************************************99888999***********************975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (145 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       133  (0.0324232); expected 82.0 (0.02)
Passed bias filter:                      103  (0.0251097); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.16u 0.19s 00:00:00.35 Elapsed: 00:00:00.47
# Mc/sec: 407.20
//
Query:       MMETSP1137-20121227|8554_1  [L=478]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (478 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       115  (0.0280351); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.17s 00:00:00.45 Elapsed: 00:00:00.44
# Mc/sec: 1433.88
//
Query:       MMETSP1137-20121227|8555_1  [L=390]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (390 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        94  (0.0229157); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.17s 00:00:00.44 Elapsed: 00:00:00.50
# Mc/sec: 1029.51
//
Query:       MMETSP1137-20121227|8556_1  [L=200]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.9e-06   25.8   0.0    3.3e-06   25.0   0.0    1.4  1  TIGR00369 unchar_dom_1: uncharacterized domain 1
     0.0013   16.2   0.0     0.0023   15.4   0.0    1.4  1  TIGR04099 biosn_Pnap_2097: probable biosynthetic protein, Pnap_2097 family
     0.0027   15.8   0.0     0.0054   14.8   0.0    1.5  1  TIGR02286 PaaD: phenylacetic acid degradation protein PaaD
  ------ inclusion threshold ------
      0.011   13.9   0.0      0.018   13.2   0.0    1.3  1  TIGR02799 thio_ybgC: tol-pal system-associated acyl-CoA thioesterase
      0.012   12.8   0.0       0.02   12.0   0.0    1.4  1  TIGR04098 biosyn_clust_1: biosynthesis cluster domain
       0.03   12.5   0.0      0.047   11.9   0.0    1.2  1  TIGR00051 TIGR00051: acyl-CoA thioester hydrolase, YbgC/YbaW family


Domain annotation for each model (and alignments):
>> TIGR00369  unchar_dom_1: uncharacterized domain 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.0   0.0   4.8e-09   3.3e-06      26     112 ..      97     188 ..      79     192 .. 0.78

  Alignments for each domain:
  == domain 1    score: 25.0 bits;  conditional E-value: 4.8e-09
   TIGR00369  26 ertlqpigsvHGGvlaaLadtagslaaaltkee...gkavvtlelnvnylrpareG...klrAiakvvhlGrqtgvaeieivdeqgrlialar 112
                   +  + g vHGG+ a+  d ++ la+ ++ +e   g    t++l+vny  p+r G   ++r +a ++  Gr++    +  +++ grlia+a 
  MMETSP1137-20121227|8556_1  97 DTLEGHPGIVHGGATASVCDDLFGLASLMCVPEtvrGRPFFTANLTVNYRAPLRTGtnvRVRVRADELD-GRKLRMHATVERESDGRLIAEAS 188
                 55555689***************88888887652227899****************9555556666654.88888888888888999999875 PP

>> TIGR04099  biosn_Pnap_2097: probable biosynthetic protein, Pnap_2097 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   3.3e-06    0.0023     212     258 ..     142     188 ..     129     189 .. 0.88

  Alignments for each domain:
  == domain 1    score: 15.4 bits;  conditional E-value: 3.3e-06
   TIGR04099 212 dlvflgNvdvgdalsvrllaleedeeslahrselrresdgakiaevv 258
                  + +++ +  g++++vr+ a e d+ +l+  + ++resdg +iae+ 
  MMETSP1137-20121227|8556_1 142 TVNYRAPLRTGTNVRVRVRADELDGRKLRMHATVERESDGRLIAEAS 188
                 567899999***********************************975 PP

>> TIGR02286  PaaD: phenylacetic acid degradation protein PaaD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0     8e-06    0.0054      24     106 ..      96     186 ..      79     191 .. 0.85

  Alignments for each domain:
  == domain 1    score: 14.8 bits;  conditional E-value: 8e-06
   TIGR02286  24 edmlngh.gtahGGllfalADsaFAlacNsageaaV......AaevtidflrparagevlvAeAkevsrsgrtgvydvevrn.eegelvAl 106
                  d l+gh g+ hGG   ++ D  F la+      +V       a+ t+++ +p r+g  +  + +  +  gr+     +v++ ++g+l+A+
  MMETSP1137-20121227|8556_1  96 GDTLEGHpGIVHGGATASVCDDLFGLASLMCVPETVrgrpffTANLTVNYRAPLRTGTNVRVRVRADELDGRKLRMHATVEReSDGRLIAE 186
                 589999988*****************9988888887544444799******************9999999999999999988678899996 PP

>> TIGR02799  thio_ybgC: tol-pal system-associated acyl-CoA thioesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   2.6e-05     0.018      53     111 ..     136     194 ..     128     199 .. 0.85

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 2.6e-05
   TIGR02799  53 fvvrkleldylkparlddaleveteveelkkaslvlaQevrrgdellveaevevacvda 111
                 f   +l+++y++p r   +++v+++ +el + +l ++ +v+r+ +  + ae +  +++a
  MMETSP1137-20121227|8556_1 136 FFTANLTVNYRAPLRTGTNVRVRVRADELDGRKLRMHATVERESDGRLIAEASTLFIKA 194
                 777899***********************************998877777777766665 PP

>> TIGR04098  biosyn_clust_1: biosynthesis cluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   2.9e-05      0.02     222     269 ..     141     188 ..     124     189 .. 0.84

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 2.9e-05
   TIGR04098 222 revvylGNadageeldvrlaraseeedgelvdvelrresdGrllavav 269
                   v y + +  g++++vr+++ + +  ++ ++ +++resdGrl+a+a 
  MMETSP1137-20121227|8556_1 141 LTVNYRAPLRTGTNVRVRVRADELDGRKLRMHATVERESDGRLIAEAS 188
                 56778888899*********888888889****************986 PP

>> TIGR00051  TIGR00051: acyl-CoA thioester hydrolase, YbgC/YbaW family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   6.9e-05     0.047      49     106 ..     136     192 ..     129     199 .. 0.86

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 6.9e-05
   TIGR00051  49 fvvvkikieYkkparlddvleirteleelkgvsvvfsqeivredeallkaetklvvcv 106
                 f+  +++++Y++p+r +  + +r + +el g ++ ++  + re    l+ae+++  ++
  MMETSP1137-20121227|8556_1 136 FFTANLTVNYRAPLRTGTNVRVRVRADELDGRKLRMHATVERESDGRLIAEASTL-FI 192
                 78889*******************************9999999998888887744.54 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (200 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        78  (0.0190151); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.16u 0.20s 00:00:00.36 Elapsed: 00:00:00.38
# Mc/sec: 694.68
//
Query:       MMETSP1137-20121227|8557_1  [L=92]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (92 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        37  (0.00901999); expected 82.0 (0.02)
Passed bias filter:                       37  (0.00901999); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.16s 00:00:00.25 Elapsed: 00:00:00.25
# Mc/sec: 485.72
//
Query:       MMETSP1137-20121227|8558_1  [L=444]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.4e-68  227.3   0.0    6.9e-68  227.0   0.0    1.0  1  TIGR00225 prc: C-terminal processing peptidase
    1.1e-46  157.2   1.5    1.4e-46  156.7   1.0    1.1  1  TIGR03900 prc_long_Delta: putative carboxyl-terminal-processing protease, deltaproteobacterial
    2.4e-08   31.2   0.0    3.2e-08   30.7   0.0    1.2  1  TIGR02037 degP_htrA_DO: peptidase Do
    1.8e-05   21.8   0.0    3.6e-05   20.9   0.0    1.4  1  TIGR02038 protease_degS: periplasmic serine peptidase DegS
  ------ inclusion threshold ------
      0.024   11.3   0.0      0.049   10.3   0.0    1.4  1  TIGR00054 TIGR00054: RIP metalloprotease RseP


Domain annotation for each model (and alignments):
>> TIGR00225  prc: C-terminal processing peptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  227.0   0.0   8.4e-71   6.9e-68       1     314 [.     105     423 ..     105     434 .. 0.93

  Alignments for each domain:
  == domain 1    score: 227.0 bits;  conditional E-value: 8.4e-71
   TIGR00225   1 reeyvkrrldekeevetaikeilaslndpytrylskeeakelsettsgel..eGiGiqvqmedd.eivivsplegsPAekagikpgDkIikvdgksva.gmelddavelirGkkgtkvkleieragkkktlelelkrekieletvkaevkkvegkkvgyirissFsehtae.dvkkalkklekkkikglilDLRgNpGGllqeavelarlflkkgk.ivsvkdrngekeveykangkqkl.klplvvlvdrgsASAsEilagAlkdnkravivGektfGKGtvQqvrelndgsglkvTiakyytpngksiqkkGiepdiei 314
                 r+eyvk+++++ + + +a++++l  l d ytry+++ ++k l +  ++ +   G+G+ +++ +   +++ ++  gsPA+ ag+ pgD++++v+g+s++ + + d+a++l+ G+   +v++++ r+g   +  l++ r+ ++  ++ka+     g   g++ + +Fse+++  ++++a+ +    ++ +++lDLR+NpGG + +ave a+lfl +gk ivs+ +r  +++  +  +g  ++ ++pl  lv++g+ASA+E++a+Al +n+rav+vGe+tfGKG vQ++ +++dg  +  T+a+y+tp g++i+  G+ep+++ 
  MMETSP1137-20121227|8558_1 105 RSEYVKKQYKNMKAAREAVTKMLGLLGDKYTRYVTPAQYKALLARYESPAgqGGVGVVLGTASSgGVLLLDVEPGSPAATAGLLPGDTLLSVGGTSITsSTSPDEAASLLFGPLSERVQVSVRRGG--DETALSVGRALLQTGAAKASSARAAGLDFGVVTLRQFSEGLTVpSLREAMGSAAIADAPAVVLDLRSNPGGHFPSAVEAAKLFLREGKtIVSTSSRTATDQQVTIVDGPYASdTRPLYLLVNKGTASAAEVFAAALAENGRAVVVGERTFGKGIVQTIAKVSDGGAVICTTARYLTPLGNDINGIGVEPNVAS 423
                 789***************************************98887654228******9876659999**************************97616789*********************97..55667889********************************88648******************************************99*******999887777777766669***************************************************************************9975 PP

>> TIGR03900  prc_long_Delta: putative carboxyl-terminal-processing protease, deltaproteobacterial
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  156.7   1.0   1.8e-49   1.4e-46     108     404 ..     122     423 ..     106     437 .. 0.84

  Alignments for each domain:
  == domain 1    score: 156.7 bits;  conditional E-value: 1.8e-49
   TIGR03900 108 avnGlLstL.DPHsvlLePeafkem..klktrGeFGGlGiviam.RdrkltVlrvlpetPAaraGlkakDrivkidees.tvnmdlndavdrlRGpvdtkvtitvrReGldeakrleleRavikvesV...eaklLegnvGyvrlktFsan.tteeleaalqdlrskaqlkGlVlDlRgNpGGLLeqAievsdkFlsqG.tiVstvgaserreekk.akedtseeakvPvvvlVdegSASAsEiVaGalknlDRaviiGrqtFGKGsVqvlrdatsadksaLKLtiAqYltpGDvsiqevGvvPDiel 404
                 av  +L  L D  +  ++P+++k +  + +     GG+G+v++    + ++ l v p++PAa aGl   D ++ ++  s t   + ++a ++l Gp   +v + vrR+G  +  +l++ Ra+++  +     a++   + G v l++Fs+  t   l++a+      a++  +VlDlR+NpGG    A+e + +Fl +G tiVst + +   ++ +   +++   ++ P+  lV++g ASA+E+ a al ++ Rav++G +tFGKG Vq + +  + d  a+  t A+Yltp    i ++Gv P++  
  MMETSP1137-20121227|8558_1 122 AVTKMLGLLgDKYTRYVTPAQYKALlaRYESPAGQGGVGVVLGTaSSGGVLLLDVEPGSPAATAGLLPGDTLLSVGGTSiTSSTSPDEAASLLFGPLSERVQVSVRRGG--DETALSVGRALLQTGAAkasSARAAGLDFGVVTLRQFSEGlTVPSLREAMGSAA-IADAPAVVLDLRSNPGGHFPSAVEAAKLFLREGkTIVSTSSRTATDQQVTiVDGPY-ASDTRPLYLLVNKGTASAAEVFAAALAENGRAVVVGERTFGKGIVQTIAK--VSDGGAVICTTARYLTPLGNDINGIGVEPNVAS 423
                 556666666588899999999999833344555679******8615689**************************987747778889*********************9..55689999**999876622245666678*********98636678999997765.45699****************************66999988877654444044555.999*********************************************99..9999*************************9965 PP

>> TIGR02037  degP_htrA_DO: peptidase Do
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.7   0.0   3.9e-11   3.2e-08     253     353 ..     163     276 ..     156     353 .. 0.76

  Alignments for each domain:
  == domain 1    score: 30.7 bits;  conditional E-value: 3.9e-11
   TIGR02037 253 lglekakGalvaevlkgspAekaGlkaGDvilkvngkkiksaadlreaigtl..kpgkkvklkilRkgkekeikvtlk..eaeeekasseks.........ekkellglsvadl 353
                 lg +++ G+l  +v +gspA++aGl  GD +l+v g +i+s+++  ea + l  +  ++v++++ R g e+ ++v  +  ++  +kass +           ++  +gl+v +l
  MMETSP1137-20121227|8558_1 163 LGTASSGGVLLLDVEPGSPAATAGLLPGDTLLSVGGTSITSSTSPDEAASLLfgPLSERVQVSVRRGGDETALSVGRAllQTGAAKASSARAagldfgvvtLRQFSEGLTVPSL 276
                 889999**********************************99987777665533789*****************9766432222222222223344544443334445555555 PP

>> TIGR02038  protease_degS: periplasmic serine peptidase DegS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   0.0   4.4e-08   3.6e-05     272     343 ..     163     236 ..     158     239 .. 0.76

  Alignments for each domain:
  == domain 1    score: 20.9 bits;  conditional E-value: 4.4e-08
   TIGR02038 272 lgledlrgivvtevdPngPaaragllvrdvilkldnkevisaeelmdrvaelr..P.gskvlvtvlrkgkqlelp 343
                 lg+ + +g+++++v+P +Paa agll+ d +l++ + +++s  +  d+ a l   P +++v+v v r g++  l 
  MMETSP1137-20121227|8558_1 163 LGTASSGGVLLLDVEPGSPAATAGLLPGDTLLSVGGTSITSSTSP-DEAASLLfgPlSERVQVSVRRGGDETALS 236
                 5677789*****************************999887654.44454431132356777777777776665 PP

>> TIGR00054  TIGR00054: RIP metalloprotease RseP
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0     6e-05     0.049     205     260 ..     172     230 ..     158     240 .. 0.76

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 6e-05
   TIGR00054 205 vlsdvvdnspaekaGlkeGDkilkidgeklkswrdlv...klvkenpeksleikveRng 260
                  l dv + spa+ aGl +GD +l++ g+ ++s +  +   +l+    ++ +++ v+R g
  MMETSP1137-20121227|8558_1 172 LLLDVEPGSPAATAGLLPGDTLLSVGGTSITSSTSPDeaaSLLFGPLSERVQVSVRRGG 230
                 6889***********************99998775440003444445667777777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (444 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       134  (0.032667); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                        19  (0.00463189); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.33u 0.18s 00:00:00.51 Elapsed: 00:00:00.51
# Mc/sec: 1149.08
//
Query:       MMETSP1137-20121227|8559_1  [L=271]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.5e-07   25.9   0.1    1.3e-06   25.4   0.1    1.2  1  TIGR01941 nqrF: NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit
    0.00017   18.6   0.1    0.00019   18.4   0.1    1.1  1  TIGR00225 prc: C-terminal processing peptidase
     0.0013   15.5   0.2     0.0015   15.4   0.2    1.1  1  TIGR02037 degP_htrA_DO: peptidase Do
     0.0015   16.5   0.0      0.004   15.2   0.0    1.8  1  TIGR02007 fdx_isc: ferredoxin, 2Fe-2S type, ISC system
     0.0016   15.7   0.3     0.0037   14.6   0.1    1.7  2  TIGR03198 pucE: xanthine dehydrogenase E subunit
     0.0098   13.6   0.1      0.021   12.6   0.1    1.6  1  TIGR03193 4hydroxCoAred: 4-hydroxybenzoyl-CoA reductase, gamma subunit


Domain annotation for each model (and alignments):
>> TIGR01941  nqrF: NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.4   0.1   1.9e-09   1.3e-06      33     121 ..     176     269 ..     170     271 .] 0.75

  Alignments for each domain:
  == domain 1    score: 25.4 bits;  conditional E-value: 1.9e-09
   TIGR01941  33 tikinddeeksltveaGdkllntlaskgifiss......acGGggscgqcrvrvvegggeilptekshisk.reakegwrlscqvkvkedlelele 121
                 ti i+    ++++v++G+ l ++l+++   + s       cGG g cg c v +      + p   +   k + +    rl+cqv v+ d+ ++l+
  MMETSP1137-20121227|8559_1 176 TIAIEG--GQAIEVPTGQLLRKVLQDNKQELYSlmgkmtNCGGVGQCGTCAVDIDAKERALSPRTAAEDRKlKGKPSSRRLACQVVVQGDMFVKLQ 269
                 444444..899*************9988766543333338*************988877777655444444145557889***********99886 PP

>> TIGR00225  prc: C-terminal processing peptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.1   2.8e-07   0.00019      54     123 ..      72     143 ..      48     216 .. 0.82

  Alignments for each domain:
  == domain 1    score: 18.4 bits;  conditional E-value: 2.8e-07
   TIGR00225  54 Giqvqmedd..eivivsplegsPAekag.ikpgDkIikvdgksvagmelddavelirGkkgtkvkleieragk 123
                 G+ ++++ +    ++ s++eg+ A  +  +  gD ++++dgk+v +   d+++e + G  g  v l +er+ +
  MMETSP1137-20121227|8559_1  72 GVLLEERAGgaGAEVASLIEGGSALSSNlVFEGDVVVSIDGKDVSSTGFDEIME-MLGDAGEIVDLVLERQVT 143
                 5666666555567899************8899*******************987.56*********9999853 PP

>> TIGR02037  degP_htrA_DO: peptidase Do
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.2   2.2e-06    0.0015     259     317 ..      82     141 ..      38     207 .. 0.69

  Alignments for each domain:
  == domain 1    score: 15.4 bits;  conditional E-value: 2.2e-06
   TIGR02037 259 kGalvaevlkgspAekaGlk.aGDvilkvngkkiksaa..dlreaigtlkpgkkvklkilRk 317
                  Ga va++++g++A ++ l  +GDv+++++gk+++s+   ++ e++g   +g+ v+l + R+
  MMETSP1137-20121227|8559_1  82 AGAEVASLIEGGSALSSNLVfEGDVVVSIDGKDVSSTGfdEIMEMLG--DAGEIVDLVLERQ 141
                 7999**********99997549************9864114444444..4566666666665 PP

>> TIGR02007  fdx_isc: ferredoxin, 2Fe-2S type, ISC system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0   5.8e-06     0.004      14      97 ..     181     266 ..     171     271 .] 0.80

  Alignments for each domain:
  == domain 1    score: 15.2 bits;  conditional E-value: 5.8e-06
   TIGR02007  14 eGavveakeGetildvalkaeieieh......acekscacttchvivrkGfdsleeasekeedlldkawGleaesrlscqavvadedlvv 97 
                  G+++e+ +G+ + +v+++++ e+ +       c ++  c tc v +     +l+  +  e+  l    G  ++ rl+cq+vv   d+ v
  MMETSP1137-20121227|8559_1 181 GGQAIEVPTGQLLRKVLQDNKQELYSlmgkmtNCGGVGQCGTCAVDIDAKERALSPRTAAEDRKL---KGKPSSRRLACQVVVQG-DMFV 266
                 578999999999999999999998642222227999999*****************999998755...6999999*****99865.5554 PP

>> TIGR03198  pucE: xanthine dehydrogenase E subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.0       2.3   1.6e+03      44      58 ..     102     116 ..      92     124 .. 0.66
   2 !   14.6   0.1   5.4e-06    0.0037      20      56 ..     194     231 ..     173     239 .. 0.73

  Alignments for each domain:
  == domain 1    score: -3.7 bits;  conditional E-value: 2.3
   TIGR03198  44 rcgacavlvdgkvan 58 
                   g  +v +dgk + 
  MMETSP1137-20121227|8559_1 102 FEGDVVVSIDGKDVS 116
                 456677777777654 PP

  == domain 2    score: 14.6 bits;  conditional E-value: 5.4e-06
   TIGR03198  20 akrladllreeltltgtkvsc.gigrcgacavlvdgkv 56 
                  k l d  +e ++l g    c g+g+cg+cav +d k 
  MMETSP1137-20121227|8559_1 194 RKVLQDNKQELYSLMGKMTNCgGVGQCGTCAVDIDAKE 231
                 3446677777789****9999459***********985 PP

>> TIGR03193  4hydroxCoAred: 4-hydroxybenzoyl-CoA reductase, gamma subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.6   0.1   3.1e-05     0.021      20      56 ..     196     233 ..     176     249 .. 0.80

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 3.1e-05
   TIGR03193  20 llvdylrdvvgltgvkqgcdg.gecgactvlvdgeprl 56 
                 +l d  +++  l g  + c g g+cg+c+v +d + r 
  MMETSP1137-20121227|8559_1 196 VLQDNKQELYSLMGKMTNCGGvGQCGTCAVDIDAKERA 233
                 46678889999********9989**********98764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (271 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       108  (0.0263286); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.24u 0.14s 00:00:00.38 Elapsed: 00:00:00.38
# Mc/sec: 941.29
//
Query:       MMETSP1137-20121227|8560_1  [L=560]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (560 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       130  (0.0316919); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.16s 00:00:00.54 Elapsed: 00:00:00.45
# Mc/sec: 1642.53
//
Query:       MMETSP1137-20121227|8561_1  [L=209]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.42    8.5   4.2        2.2    6.2   0.7    2.5  2  TIGR04031 Htur_1727_fam: rSAM-partnered protein, Htur_1727 family


Domain annotation for each model (and alignments):
>> TIGR04031  Htur_1727_fam: rSAM-partnered protein, Htur_1727 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   0.7   0.00052       2.2      54      69 ..     170     185 ..     142     187 .. 0.65
   2 ?    3.2   0.1    0.0047        19      45      61 ..     189     206 ..     184     209 .] 0.81

  Alignments for each domain:
  == domain 1    score: 6.2 bits;  conditional E-value: 0.00052
   TIGR04031  54 vaealWlCPadeveRy 69 
                  a + W+CP + v+ y
  MMETSP1137-20121227|8561_1 170 GAAEAWVCPREWVQAY 185
                 36778******99988 PP

  == domain 2    score: 3.2 bits;  conditional E-value: 0.0047
   TIGR04031  45 eqa.asLFdwvaealWlC 61 
                 e+a ++L     e++W+C
  MMETSP1137-20121227|8561_1 189 EHAsCELVTVEGEQVWVC 206
                 55537999999******* PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (209 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       174  (0.0424183); expected 82.0 (0.02)
Passed bias filter:                      102  (0.0248659); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.20u 0.15s 00:00:00.35 Elapsed: 00:00:00.67
# Mc/sec: 411.73
//
Query:       MMETSP1137-20121227|8562_1  [L=33]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (33 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        35  (0.00853242); expected 82.0 (0.02)
Passed bias filter:                       29  (0.00706972); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.24
# Mc/sec: 181.49
//
Query:       MMETSP1137-20121227|8563_1  [L=554]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.1e-89  296.7   0.0    7.7e-89  296.1   0.0    1.2  1  TIGR00120 ArgJ: glutamate N-acetyltransferase/amino-acid acetyltransferase


Domain annotation for each model (and alignments):
>> TIGR00120  ArgJ: glutamate N-acetyltransferase/amino-acid acetyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  296.1   0.0   1.9e-92   7.7e-89      16     405 .]     148     554 .]     137     554 .] 0.85

  Alignments for each domain:
  == domain 1    score: 296.1 bits;  conditional E-value: 1.9e-92
   TIGR00120  16 ikeGkkkssldlgliisereava.aavfttnkvraapvkvskevlkdkasikaivvnsgnanavtGeqGlkDakemarlvaeklgiee..eevlvastGviGrrldmekikkkiekvieelkessnssekvakailttDtvpkevavelelegkkvriggvakGaGmiaPnmatlLgFittdveieskalqkmLrkatdksFnqitvDGdtstnDtvlvlangas....etkaitedskeaeklkeallavcqelakaiarDGeGatkllevqvkgakneedakviaraiagslLvktavfGaDpnWGRivaaiGys....gadvdkeevsvilsdekeevvlvdngep.lefe.ees..............eraeeilk..sdeieivvdlatGdeeataygCDLsydYvkinaeYtt 405
                  ++G  + ++ l+li++++++++ aavft+n +   pv+v k+++++ ++++a++vn    n +   +G+ D +  ++ +a  l++ +   +vl +stGviG +l + ++++ + +++++l+ +  s+  +a+ i+ttD++pk  a+ +       ri g+akGaGmi Pnmat+L+F++tdv++ +++lq mL++a+d sFn+++vD d+st Dt++ l++ a+    e +  +e++    ++++al++vc+ la  +ar+GeG+t ++ vqv+ga + + a+ + +a+++s L ktav G+Dpn GR+vaa+G      + d+  ++ +++l++      ++  g+  l++e e +              + a+ ++   +  +e+ +dl+ Gd+  t+ g DL+ +Yv ina+Y++
  MMETSP1137-20121227|8563_1 148 AATGT-RVKMRLTLIVADKPSSSfAAVFTKNAFCGSPVTVGKRRMRESPTLQALLVNNKVSNVCAAGDGVADSEALCEALATALELPDgaASVLPSSTGVIGWKLPVPEMRAAMPEAVASLQAG--SALPAAQGIMTTDRYPKLRAASVC----GGRIVGIAKGAGMIEPNMATMLSFLLTDVAVPRAQLQAMLSRAVDVSFNCMSVDADQSTSDTLVCLSSEAKllcpEGASDEEQAAALAEFESALTSVCEGLAADVARNGEGTTHVIRVQVTGAPSVDLARGVGKAVVNSPLFKTAVAGNDPNVGRLVAAVGSYlgrvAPDLSLDKCTMSLGG----RPIFSAGSFdLDNEaE-AalsahmrdalisddNGASLLYPphQRCVEVAIDLGVGDKGVTVLGSDLTREYVDINADYRS 554
                 45566.458999*****9987544**********************************************************9998752268999*****************************..8899**************888554....45899*********************************************************98888765422224556667788889************************************************************************9766676666666667776666....2233333322333211.1122333333444446898898776788********************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (554 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        79  (0.0192589); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.17s 00:00:00.54 Elapsed: 00:00:00.57
# Mc/sec: 1260.72
//
Query:       MMETSP1137-20121227|8564_1  [L=367]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (367 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        95  (0.0231594); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.14s 00:00:00.41 Elapsed: 00:00:00.42
# Mc/sec: 1153.33
//
Query:       MMETSP1137-20121227|8565_1  [L=361]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (361 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        65  (0.0158459); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.17s 00:00:00.44 Elapsed: 00:00:00.34
# Mc/sec: 1401.41
//
Query:       MMETSP1137-20121227|8566_1  [L=362]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.5e-24   83.0   0.1    7.7e-24   82.5   0.1    1.2  1  TIGR02349 DnaJ_bact: chaperone protein DnaJ
      1e-18   65.0   0.0    1.3e-18   64.6   0.0    1.1  1  TIGR03835 termin_org_DnaJ: terminal organelle assembly protein TopJ
    5.2e-09   34.0   0.0    4.3e-07   27.7   0.0    2.0  2  TIGR01130 ER_PDI_fam: protein disulfide isomerases
    8.9e-09   33.4   0.0    1.8e-08   32.4   0.0    1.5  1  TIGR01126 pdi_dom: protein disulfide-isomerase domain
    1.2e-08   32.9   0.0    2.2e-08   32.0   0.0    1.4  1  TIGR01068 thioredoxin: thioredoxin
     0.0015   15.0   0.0     0.0019   14.7   0.0    1.1  1  TIGR00424 APS_reduc: 5'-adenylylsulfate reductase, thioredoxin-independent
     0.0044   15.0   0.0     0.0074   14.2   0.0    1.3  1  TIGR00714 hscB: Fe-S protein assembly co-chaperone HscB
  ------ inclusion threshold ------
      0.014   12.8   0.0      0.026   12.0   0.0    1.4  1  TIGR00385 dsbE: periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily
      0.029   11.9   0.0      0.058   10.9   0.0    1.4  1  TIGR02738 TrbB: type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB


Domain annotation for each model (and alignments):
>> TIGR02349  DnaJ_bact: chaperone protein DnaJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.5   0.1   1.7e-26   7.7e-24       1      98 [.      86     184 ..      86     202 .. 0.81

  Alignments for each domain:
  == domain 1    score: 82.5 bits;  conditional E-value: 1.7e-26
   TIGR02349   1 dYYeiLgvskdAseeeikkAYrklakkyHPDrnkg....ekeaeekfkeineAyevLsdeekraqYDqfghagleggaggggagfegfeasefgdigdifee 98 
                 d+Y +Lgvs+dA+ + +k+A+rk+a k+HPD+++g    +++a+ +f   ++A+evLsd+ekr+ YD +g++gle+++ +gg++ +g      g++ + f++
  MMETSP1137-20121227|8566_1  86 DFYAVLGVSRDADGAALKRAFRKVALKHHPDKQQGsdeeKEDAQRQFILASRAFEVLSDPEKRRIYDIYGEQGLESTTSTGGGHGAGAX---QGSMFSSFSS 184
                 9********************************987776788999******************************98665443322222...2233344443 PP

>> TIGR03835  termin_org_DnaJ: terminal organelle assembly protein TopJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.6   0.0   2.8e-21   1.3e-18       3      73 ..      86     161 ..      84     186 .. 0.88

  Alignments for each domain:
  == domain 1    score: 64.6 bits;  conditional E-value: 2.8e-21
   TIGR03835   3 DyyevLgidrDadeqeikkafrkLakkyhPDrnk....a.adaakifaeineandvLsnPkkraryDkyGhDGvDr 73 
                 D+y vLg++rDad   +k+afrk+a k+hPD+ +    +  da++ f     a++vLs+P+kr  yD yG  G++ 
  MMETSP1137-20121227|8566_1  86 DFYAVLGVSRDADGAALKRAFRKVALKHHPDKQQgsdeEkEDAQRQFILASRAFEVLSDPEKRRIYDIYGEQGLES 161
                 9******************************976222124689999999************************986 PP

>> TIGR01130  ER_PDI_fam: protein disulfide isomerases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.0     0.012       5.3     121     188 ..      79     147 ..      73     163 .. 0.76
   2 !   27.7   0.0   9.4e-10   4.3e-07     367     432 ..     209     273 ..     205     309 .. 0.85

  Alignments for each domain:
  == domain 1    score: 4.3 bits;  conditional E-value: 0.012
   TIGR01130 121 lekllekkevvvvgvfkdldsel.vetflevaeklrdkfkavasssdeaalkkleakkdevvlvkkkke 188
                 ++++++++  +v+gv++d+d+++ + +f +va k++ + ++ +++++e+a +++  ++ +  +++++++
  MMETSP1137-20121227|8566_1  79 VNTFAADDFYAVLGVSRDADGAAlKRAFRKVALKHHPDKQQGSDEEKEDAQRQFILASRAFEVLSDPEK 147
                 7889999***********997651678******999999977877777777777776666666555554 PP

  == domain 2    score: 27.7 bits;  conditional E-value: 9.4e-10
   TIGR01130 367 LvefYApWCGHCkkLapiYeelaekykkeedvviakldataNdvpe.fevegFPTilfvpagkksep 432
                 Lv +YA WC H  ++ap  e+lae++k    + +a +d     +++  ++e  PT+ ++ a+  ++ 
  MMETSP1137-20121227|8566_1 209 LVFYYASWCRHAEEMAPLVEQLAEELKGF--IKVASMDVGDMAISSrLRIEMSPTLRLYSAEGPEQG 273
                 899************************97..779**********999**********9999876555 PP

>> TIGR01126  pdi_dom: protein disulfide-isomerase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.4   0.0     4e-11   1.8e-08      13      89 ..     204     277 ..     192     292 .. 0.78

  Alignments for each domain:
  == domain 1    score: 32.4 bits;  conditional E-value: 4e-11
   TIGR01126  13 enkdvlvefyaPWCGhCkklaPeyeklakelkkeeekvkiakvdataekelaskfkvsgfPtlkffkkgk.kepvdye 89 
                  +  +lv +ya WC h  ++aP  e+la+elk     +k+a +d     +++s++ ++  Ptl++++++  ++ +++ 
  MMETSP1137-20121227|8566_1 204 GDLPWLVFYYASWCRHAEEMAPLVEQLAEELKG---FIKVASMDVGD-MAISSRLRIEMSPTLRLYSAEGpEQGEEWR 277
                 55679***************************7...69******976.56778**********998765404455555 PP

>> TIGR01068  thioredoxin: thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.0   0.0   4.9e-11   2.2e-08       9      76 ..     200     266 ..     193     278 .. 0.88

  Alignments for each domain:
  == domain 1    score: 32.0 bits;  conditional E-value: 4.9e-11
   TIGR01068   9 tvassdklvlvDfwAeWCgpCkmlaPvleelakeleekvkvvKlnvdeeqeiaakygirsiPtlllfk 76 
                 + a++d + lv ++A+WC     +aP++e+la+el++ +kv+ ++v +  +i+++  i+  Ptl l+ 
  MMETSP1137-20121227|8566_1 200 ASARGDLPWLVFYYASWCRHAEEMAPLVEQLAEELKGFIKVASMDVGD-MAISSRLRIEMSPTLRLYS 266
                 566788899*************************************87.579***********98876 PP

>> TIGR00424  APS_reduc: 5'-adenylylsulfate reductase, thioredoxin-independent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0   4.2e-06    0.0019     373     437 ..     206     266 ..     168     289 .. 0.77

  Alignments for each domain:
  == domain 1    score: 14.7 bits;  conditional E-value: 4.2e-06
   TIGR00424 373 eawlvvlyapwcpfcqameasyvelaeklagsgvkvakfradgdqkefakqelqlgsfptillfp 437
                  +wlv  ya wc+  + m     +lae l g  +kva +   gd        l+++ +pt+ l+ 
  MMETSP1137-20121227|8566_1 206 LPWLVFYYASWCRHAEEMAPLVEQLAEELKGF-IKVASMDV-GDMA--ISSRLRIEMSPTLRLYS 266
                 48***************************995.78887643.3332..23456677777776665 PP

>> TIGR00714  hscB: Fe-S protein assembly co-chaperone HscB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.0   1.6e-05    0.0074       4      56 ..      98     151 ..      96     162 .. 0.88

  Alignments for each domain:
  == domain 1    score: 14.2 bits;  conditional E-value: 1.6e-05
   TIGR00714   4 DekaLrkryrklQkqyHPD.vsksaqeqaaalqqStelNqAykTLkdplkRaey 56 
                 D  aL++ +rk+  ++HPD   +s  e+  a +q      A++ L dp kR  y
  MMETSP1137-20121227|8566_1  98 DGAALKRAFRKVALKHHPDkQQGSDEEKEDAQRQFILASRAFEVLSDPEKRRIY 151
                 7789***************88889999999999999999*********999655 PP

>> TIGR00385  dsbE: periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   5.7e-05     0.026      64     102 ..     206     247 ..     185     254 .. 0.79

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 5.7e-05
   TIGR00385  64 klvLlnvwasWCptCraehplLkelake..g.lrivgvdykD 102
                  + L+  +asWC    +  pl+++la+e  g +++ ++d  D
  MMETSP1137-20121227|8566_1 206 LPWLVFYYASWCRHAEEMAPLVEQLAEElkGfIKVASMDVGD 247
                 478999********************9733577888887766 PP

>> TIGR02738  TrbB: type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00013     0.058      54      89 ..     209     244 ..     197     251 .. 0.89

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 0.00013
   TIGR02738  54 lvlfyqstCpyChqfapvLkqlsqqtglevlayslD 89 
                 lv++y s C +    ap + ql+++ +  + + s+D
  MMETSP1137-20121227|8566_1 209 LVFYYASWCRHAEEMAPLVEQLAEELKGFIKVASMD 244
                 8***********************999888888877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (362 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        99  (0.0241346); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         9  (0.00219405); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.31u 0.11s 00:00:00.42 Elapsed: 00:00:00.44
# Mc/sec: 1085.91
//
Query:       MMETSP1137-20121227|8567_1  [L=147]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (147 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        68  (0.0165773); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.10s 00:00:00.27 Elapsed: 00:00:00.39
# Mc/sec: 497.50
//
Query:       MMETSP1137-20121227|8568_1  [L=325]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (325 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       122  (0.0297416); expected 82.0 (0.02)
Passed bias filter:                       97  (0.023647); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.15s 00:00:00.42 Elapsed: 00:00:00.33
# Mc/sec: 1299.89
//
Query:       MMETSP1137-20121227|8569_1  [L=93]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (93 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       186  (0.0453437); expected 82.0 (0.02)
Passed bias filter:                      152  (0.0370551); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.14s 00:00:00.28 Elapsed: 00:00:00.28
# Mc/sec: 438.39
//
Query:       MMETSP1137-20121227|8570_1  [L=386]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.9e-65  219.2   7.4    2.3e-65  218.9   5.1    1.0  1  TIGR00817 tpt: Tpt phosphate/phosphoenolpyruvate translocator


Domain annotation for each model (and alignments):
>> TIGR00817  tpt: Tpt phosphate/phosphoenolpyruvate translocator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  218.9   5.1   5.7e-69   2.3e-65       3     299 ..      18     318 ..      16     322 .. 0.94

  Alignments for each domain:
  == domain 1    score: 218.9 bits;  conditional E-value: 5.7e-69
   TIGR00817   3 tgllfllwyvlnvyFnivnkkllklfhypvlktlvslavgvllellswssilkkrlkiskallklllpvaivhtighvtsnvslskvavSfthtikalepifsvvlskfflgrefpltlylsLlpivlGvalasltelsfnllgflsamisniefvarnifsKkiltkk....sldklnlyalisililfllspiafiveglklltreflqa..iskvnvlklvtvslvaalgifHlyqqvafqllervspltysvgNvlKRvvvIvvSilffetkisflqvlGvilaiaGvflYskvkakkk 299
                 + ++fllwy+lnv++n  nk +lk++  p++++ ++l  g+l+++  w ++l k +k+ ++ +++++pva++h+ g+  +  sl++ ++ f+ ++k+lep+f+vv  +++++ ++p  + + Llp+v Gv  as  +l+f +  f  am sn  f  r ++sKk++       ++d  n +a+++ l++++ +p+a+++eg kl   e+  a    k +   + ++ l   l  f ly+ v+f +l+ v p+t++vgN++KRv+ I +S++ f+t+++++ ++G ++a+ Gvf Ys  k++ k
  MMETSP1137-20121227|8570_1  18 IIFFFLLWYALNVVYNDTNKTVLKVLDLPWTISALQLGLGLLYITPLWVTGLRKXPKLGFSDIMAITPVALIHAAGQCVTVASLGAGSIAFVNVVKSLEPFFNVVFGALLMNDVLPWQVNICLLPVVAGVGIASAADLNFTWECFAYAMGSNFFFSLRGVISKKTMADVdaskNMDPGNTFAVLTALAFIVTLPVALALEGHKLQS-EWDAAmgSGKFTAEDMLARILGSGL-SFYLYNEVSFYTLGMVHPITHAVGNTIKRVILILFSVIRFGTPMTTQSAIGSTIAVGGVFAYSVAKQQXK 318
                 6789******************************************************************************************************************************************************************86566669*****************************998.6655411346777788888888888.899*************************************************************999865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (386 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       136  (0.0331546); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.28u 0.15s 00:00:00.43 Elapsed: 00:00:00.43
# Mc/sec: 1184.83
//
Query:       MMETSP1137-20121227|8571_1  [L=675]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.3e-34  117.3   0.0    1.8e-34  116.9   0.0    1.0  1  TIGR02956 TMAO_torS: TMAO reductase sytem sensor TorS
    6.7e-20   69.2   0.0    9.7e-20   68.6   0.0    1.1  1  TIGR02966 phoR_proteo: phosphate regulon sensor kinase PhoR
    4.1e-13   46.6   0.0    8.4e-13   45.6   0.0    1.5  1  TIGR02916 PEP_his_kin: putative PEP-CTERM system histidine kinase
    2.9e-10   37.5   0.1    6.1e-10   36.5   0.0    1.4  1  TIGR01386 cztS_silS_copS: heavy metal sensor kinase
    1.3e-07   29.0   0.0    2.2e-07   28.2   0.0    1.2  1  TIGR02154 PhoB: phosphate regulon transcriptional regulatory protein PhoB
    0.00095   15.6   0.0     0.0015   14.9   0.0    1.2  1  TIGR02938 nifL_nitrog: nitrogen fixation negative regulator NifL
     0.0019   15.3   0.0     0.0031   14.6   0.0    1.2  1  TIGR02875 spore_0_A: sporulation transcription factor Spo0A
  ------ inclusion threshold ------
      0.039   11.4   0.0      0.072   10.6   0.0    1.3  1  TIGR01387 cztR_silR_copR: heavy metal response regulator


Domain annotation for each model (and alignments):
>> TIGR02956  TMAO_torS: TMAO reductase sytem sensor TorS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  116.9   0.0   3.5e-37   1.8e-34     459     818 ..     252     637 ..     244     666 .. 0.81

  Alignments for each domain:
  == domain 1    score: 116.9 bits;  conditional E-value: 3.5e-37
   TIGR02956 459 eAnrAKSaFLAtmSHEiRTPlnGv.lGTleLLadtkL.tseq.qkylqvinrSGesLldiLnDiLDySkiEaG.hlsiserafdlskLledvlhlmesraqekgiqLsleidedlpevlqgDlsrirQvliNlvgNaiKFTdrGsvvlrvslndds..llfeVeDtGvGiaeeeqetlFkaftqaegrkksgGTGLGLAiskrlveamdgelsveSelgkGScFafelplergkkaeksat.....kevidvppa.......rvLlvEDNevnamvaqglleklGh.kvtlaesgksAleclee.kaF...DlallDinLpDtdGvtLlkqLkeleeake....e.lkfiavsAhvfnedve.kylaagFdgflaKPlsekqLvatlak 818
                 +A r +  ++A++SH+  TP+  + +G  +L ++ +  +se   k l+  n   e L  +    +  Sk+  G +++ ++r ++l++Ll++  + +    ++ ++  ++++de++p  + +D + i  +++N+++Na K    G v+  v   dd+  l+f+V+DtG+G++ +   +lFk+f +a+      GTGLGL  s++l+  + g+ +   +  +G  F  ++    +  + +s+        ++++p +          l+   ++  ++++ +l+ lG  +v+ a +g++A++ l   +a     l+++D+++p   G++ ++++++ e+++     + l++++++A+  + + + +  +ag dg+l KPls++qL + l+ 
  MMETSP1137-20121227|8571_1 252 DARRSQDRYMAAISHDFGTPIAAMqMGMKQLTSELREkKSEVnSKLLAGLNGALELLVVLRHKAITLSKVRGGlNVQPQPRTVELRALLNKLRDTVDIVPRRPQVVVNFKVDESVPTHVITDAELIFMIMVNFLSNAFKHVRDGTVTATVDAIDDKgtLRFAVADTGLGVPADFVPHLFKPFARATAWS--SGTGLGLYHSQQLAISLRGNAGYMANHPRGAIFYVDVVCPVATTNLESSLpilsnYSADTLPQQsetltpeLAKLL-SDPIIRDLTTWILTDLGAaSVSEAVDGQDAEQQLLSnDAHagpALVFMDVQMPFLTGMDCTRRIRAWEAERRvpaeKrLRILGLTANGDDPNCAaECFDAGMDGVLCKPLSKDQLLQCLRM 637
                 68899999**************9967888886553320233303444445555555555556899***********************9876666666666666************************************************999999***************************9876..9*********************************998655554443333211111455666666766666333344.457888999********637899********9876534432235899*********************9998999746**********9999762689*******************9975 PP

>> TIGR02966  phoR_proteo: phosphate regulon sensor kinase PhoR
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.6   0.0   1.9e-22   9.7e-20     107     303 ..     250     447 ..     242     458 .. 0.88

  Alignments for each domain:
  == domain 1    score: 68.6 bits;  conditional E-value: 1.9e-22
   TIGR02966 107 lkrleqmRrdFvanvsHELrtPLtvlkGyletleeep.eeddeaaekalelmeeqskrmqsLvedLltLsrlEsa.akekeeekvdvaelleelkkeaealseekehqielevdaav..kvkgdeeeLrsalsNLveNAikytpegg.eitvrweeeeegaelsvkDtGeGIaaehlprltERFYRvdksrsretgGtGLGL 303
                 l    +    ++a +sH+  tP++ ++  +  l++e  e+++e+++k l+ ++   + +  L ++ +tLs++    + + + ++v++++ll++l+++++++ ++ ++ ++++vd++v  +v  d e +  ++ N+++NA k+ ++g+ + tv++  ++++ +++v+DtG G++a+ +p+l+  F R  +     ++GtGLGL
  MMETSP1137-20121227|8571_1 250 LMDARRSQDRYMAAISHDFGTPIAAMQMGMKQLTSELrEKKSEVNSKLLAGLNGALELLVVLRHKAITLSKVRGGlNVQPQPRTVELRALLNKLRDTVDIVPRRPQVVVNFKVDESVptHVITDAELIFMIMVNFLSNAFKHVRDGTvTATVDAIDDKGTLRFAVADTGLGVPADFVPHLFKPFARATA----WSSGTGLGL 447
                 44444455579****************889999888878999999***************************99856788899******************************887522788999999***************99863678999999999************************99765....4569****9 PP

>> TIGR02916  PEP_his_kin: putative PEP-CTERM system histidine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.6   0.0   1.6e-15   8.4e-13     529     676 ..     319     475 ..     262     478 .. 0.85

  Alignments for each domain:
  == domain 1    score: 45.6 bits;  conditional E-value: 1.6e-15
   TIGR02916 529 aqLrekgl.eeekkavdlvdllervieskraqkprievsv..dkd....levradrerlervlghLvqNAleATeeeGkVkirverek..eaavieieDsGqGmseeFirerLFkPFd..ttKkaGmGiGvyesreyveelGGeieveStpgkGtiftl 676
                 +++r +   + + ++v+l +ll+++ ++ ++  +r++v v  + d     +v +d e +  ++++ + NA     ++G+V+  v+  +  ++++ +++D+G G++ +F+  +LFkPF   t+ + G G+G+y s+++  +l G+    ++  +G+if +
  MMETSP1137-20121227|8571_1 319 SKVRGGLNvQPQPRTVELRALLNKLRDTVDIVPRRPQVVVnfKVDesvpTHVITDAELIFMIMVNFLSNAFKHV-RDGTVTATVDAIDdkGTLRFAVADTGLGVPADFV-PHLFKPFAraTAWSSGTGLGLYHSQQLAISLRGNAGYMANHPRGAIFYV 475
                 566655444778899*************999988877655323333456678899****************975.689999888877644789999************5.79*****7324456*******************************9987 PP

>> TIGR01386  cztS_silS_copS: heavy metal sensor kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.5   0.0   1.2e-12   6.1e-10     232     427 ..     248     447 ..     241     467 .. 0.84

  Alignments for each domain:
  == domain 1    score: 36.5 bits;  conditional E-value: 1.2e-12
   TIGR01386 232 drLedafqrlsqFsadlAHelRtPltnLltqtqvaLsreRs..geeyrevlesnleEleRlsrmvedmLfLaradna.qlalereeldlaaelekvaelfevlaeergvslkvege....aevegdaqlfrRalsNLlsNAlrytpegsti.evrverradevevsventgkgipeeelsrlFdRFYRvdaarsnseegtGLGL 427
                 + L da + ++++ a + H+  tP++ + +  + + s  R+   e    +l++    le l  + +  + L ++  + +++++ ++++l a l+k+++  + +    +v ++++++      v  da+l+   + N lsNA ++  +g+ + +v   +++++++ +v +tg g+p++  ++lF  F R+ a     ++gtGLGL
  MMETSP1137-20121227|8571_1 248 QELMDARRSQDRYMAAISHDFGTPIAAMQMGMKQLTSELREkkSEVNSKLLAGLNGALELLVVLRHKAITLSKVRGGlNVQPQPRTVELRALLNKLRDTVDIVPRRPQVVVNFKVDesvpTHVITDAELIFMIMVNFLSNAFKHVRDGTVTaTVDAIDDKGTLRFAVADTGLGVPADFVPHLFKPFARATA----WSSGTGLGL 447
                 56778889999999***********99966555555554541044556777777788999999999999****9877479************************999998888877333356779***********************97537999******************************99865....577899998 PP

>> TIGR02154  PhoB: phosphate regulon transcriptional regulatory protein PhoB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.2   0.0   4.3e-10   2.2e-07      12     116 ..     519     635 ..     515     640 .. 0.81

  Alignments for each domain:
  == domain 1    score: 28.2 bits;  conditional E-value: 4.3e-10
   TIGR02154  12 eairellaynlekeg.yevveaedaeealali....keelPdlilldWmlpgtsGielarrlrkeeetreiP......iimltargeeedrv.rgletGaddyvvkPfspkellari 116
                 + ir+l ++ l   g  +v ea d+++a++++    +++ P l+ +d  +p  +G++ +rr+r  e  r +P      i+ lta g++ ++  +++++G d  + kP s  +ll  +
  MMETSP1137-20121227|8571_1 519 PIIRDLTTWILTDLGaASVSEAVDGQDAEQQLlsndAHAGPALVFMDVQMPFLTGMDCTRRIRAWEAERRVPaekrlrILGLTANGDDPNCAaECFDAGMDGVLCKPLSKDQLLQCL 635
                 5678888888877651467789999999877633223457***********************999888888666666899*******998537*****************998755 PP

>> TIGR02938  nifL_nitrog: nitrogen fixation negative regulator NifL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   2.9e-06    0.0015     419     468 ..     405     453 ..     326     464 .. 0.75

  Alignments for each domain:
  == domain 1    score: 14.9 bits;  conditional E-value: 2.9e-06
   TIGR02938 419 veddlirveiedsGPGiPadlrlkvfePffttkassrkhvGmGlavaqei 468
                  ++  +r  + d+G G+Pad++ + f Pf  + a    + G+Gl   q++
  MMETSP1137-20121227|8571_1 405 DDKGTLRFAVADTGLGVPADFVPHLFKPFARATA-WSSGTGLGLYHSQQL 453
                 34557899********************977655.467899999999886 PP

>> TIGR02875  spore_0_A: sporulation transcription factor Spo0A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.0     6e-06    0.0031      34     124 ..     540     641 ..     524     660 .. 0.73

  Alignments for each domain:
  == domain 1    score: 14.6 bits;  conditional E-value: 6e-06
   TIGR02875  34 aknGvealeli....kekkpdvvvldiimpyldGlgvleklaeielkak.p.....kvlllsavGqe.kitkravelGadyyvlkpfdleilaarirqlaek 124
                 a +G++a + +    ++  p +v +d+ mp+l G+    +++  e +++ p     ++l l+a G + + +  + + G d  + kp+  + l + +r l  +
  MMETSP1137-20121227|8571_1 540 AVDGQDAEQQLlsndAHAGPALVFMDVQMPFLTGMDCTRRIRAWEAERRvPaekrlRILGLTANGDDpNCAAECFDAGMDGVLCKPLSKDQLLQCLRMLDLD 641
                 66777775433111133469*****************9999876654321222222999******98568999**************999998888877655 PP

>> TIGR01387  cztR_silR_copR: heavy metal response regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   0.00014     0.072      41     112 ..     557     637 ..     529     649 .. 0.73

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 0.00014
   TIGR01387  41 ddydliildvmlpgldGwevlkalresaketp........vllltarde.vadkvkGlelGaddylvkpfefaellarvrt 112
                    +l+ +dv++p+l G +  + +r  + e+         +l lta+++  +     ++ G d  l kp++  +ll  +r 
  MMETSP1137-20121227|8571_1 557 AGPALVFMDVQMPFLTGMDCTRRIRAWEAERRvpaekrlrILGLTANGDdPNCAAECFDAGMDGVLCKPLSKDQLLQCLRM 637
                 34579***************9999975554431122222268899986515667899***************999988886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (675 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       198  (0.0482691); expected 82.0 (0.02)
Passed bias filter:                      120  (0.029254); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         8  (0.00195027); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.55u 0.19s 00:00:00.74 Elapsed: 00:00:00.81
# Mc/sec: 1099.91
//
Query:       MMETSP1137-20121227|8572_1  [L=148]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (148 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       126  (0.0307167); expected 82.0 (0.02)
Passed bias filter:                      101  (0.0246221); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.14s 00:00:00.30 Elapsed: 00:00:00.30
# Mc/sec: 651.15
//
Query:       MMETSP1137-20121227|8575_1  [L=731]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (731 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       121  (0.0294978); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.18s 00:00:00.63 Elapsed: 00:00:00.46
# Mc/sec: 2097.48
//
Query:       MMETSP1137-20121227|8576_1  [L=321]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (321 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        65  (0.0158459); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.13s 00:00:00.40 Elapsed: 00:00:00.36
# Mc/sec: 1176.90
//
Query:       MMETSP1137-20121227|8577_1  [L=221]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.6e-06   23.0   0.0    1.5e-05   22.3   0.0    1.3  1  TIGR03516 ppisom_GldI: peptidyl-prolyl isomerase, gliding motility-associated


Domain annotation for each model (and alignments):
>> TIGR03516  ppisom_GldI: peptidyl-prolyl isomerase, gliding motility-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.3   0.0   3.6e-09   1.5e-05     122     176 ..      90     144 ..      77     145 .. 0.93

  Alignments for each domain:
  == domain 1    score: 22.3 bits;  conditional E-value: 3.6e-09
   TIGR03516 122 edlisGlrdglklmkegeevtfllPsykayGyyGdedkigsnlpikstvtllnik 176
                 +++i G  ++++lm eg++  +++Ps  ayG  G   kig    +  t+ +l+ik
  MMETSP1137-20121227|8577_1  90 NQVIGGWTEAMQLMVEGDKWELYIPSELAYGDRGSPPKIGGGDVLVFTIEILKIK 144
                 67899************************************99999999999886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (221 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        63  (0.0153584); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.19u 0.15s 00:00:00.34 Elapsed: 00:00:00.34
# Mc/sec: 857.93
//
Query:       MMETSP1137-20121227|8578_1  [L=164]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (164 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       128  (0.0312043); expected 82.0 (0.02)
Passed bias filter:                      114  (0.0277913); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.12s 00:00:00.29 Elapsed: 00:00:00.30
# Mc/sec: 721.54
//
Query:       MMETSP1137-20121227|8579_1  [L=351]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.1e-06   23.8   2.5    2.8e-06   23.3   1.7    1.1  1  TIGR02917 PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein
    2.1e-05   21.4   0.0    3.7e-05   20.6   0.0    1.4  1  TIGR00115 tig: trigger factor
    5.2e-05   20.5   0.0    8.4e-05   19.8   0.0    1.3  1  TIGR03516 ppisom_GldI: peptidyl-prolyl isomerase, gliding motility-associated
    0.00018   18.1   2.9     0.0011   15.4   2.0    1.9  1  TIGR00990 3a0801s09: mitochondrial precursor proteins import receptor
    0.00075   17.1   3.0     0.0042   14.7   1.0    2.1  2  TIGR02552 LcrH_SycD: type III secretion low calcium response chaperone LcrH/SycD


Domain annotation for each model (and alignments):
>> TIGR02917  PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.3   1.7   3.4e-09   2.8e-06     117     228 ..     214     324 ..     207     346 .. 0.84

  Alignments for each domain:
  == domain 1    score: 23.3 bits;  conditional E-value: 3.4e-09
   TIGR02917 117 sslddeeaaellalrglAaLglgeleeAqksleqAlaiapks..leaklglAqlalaenkldearalvdevLtadpknvdAllLkgdlllssgnieeAlaayrkaielkpnaia 228
                 ++ ++ + ae+l+l g+Aa++l   + A   l +A +++ ks  ++  l  A  +l+  +++ea+a  ++vL ++p+nv+Al  +g   +  +++++  a++r+a++l+p++++
  MMETSP1137-20121227|8579_1 214 EAFKQSKWAEALELYGDAAMIL---DGAYPPLPEADEAEGKSalISCWLNQATCSLKMSEYAEAEASCSKVLDKEPENVKALFRRGTARMQMSEFDASKADLREAARLDPKSKE 324
                 5556777889999999999885...6777888888877766622688999************************************************************9875 PP

>> TIGR00115  tig: trigger factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   0.0   4.5e-08   3.7e-05     151     207 ..      98     157 ..      81     183 .. 0.87

  Alignments for each domain:
  == domain 1    score: 20.6 bits;  conditional E-value: 4.5e-08
   TIGR00115 151 kgDivtidfeg.kvdGeafeggka..edfelelgsgqfipgfeeqlvGmkaGeekeikvt 207
                 kg  v++ ++g   dG +f++      +f++++g+gq+i+g +e++  m +Ge++e+ + 
  MMETSP1137-20121227|8579_1  98 KGSEVKVHYVGtLRDGSKFDSSRDrpGNFNFTIGQGQVIKGWDEGVATMHKGEVAELVCR 157
                 7889*******555******9998667***************************998665 PP

>> TIGR03516  ppisom_GldI: peptidyl-prolyl isomerase, gliding motility-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   0.0     1e-07   8.4e-05      84     174 ..      94     185 ..      81     188 .. 0.82

  Alignments for each domain:
  == domain 1    score: 19.8 bits;  conditional E-value: 1e-07
   TIGR03516  84 ktpetgDlvsfeyeikaldgdviyskee.lgpktykvdqedlisGlrdglklmkegeevtfllPsykayGyyGdedkigsnlpikstvtlln 174
                  tp +g  v+ +y     dg+   s  +  g   +++ q ++i+G  +g+  m++ge + ++  +  ayG  G    i +n ++k +v ll 
  MMETSP1137-20121227|8579_1  94 GTPPKGSEVKVHYVGTLRDGSKFDSSRDrPGNFNFTIGQGQVIKGWDEGVATMHKGEVAELVCRADYAYGARGSPPTIPPNATLKFEVELLG 185
                 566677777777755555666665555414677899****************************************************9986 PP

>> TIGR00990  3a0801s09: mitochondrial precursor proteins import receptor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   2.0   1.4e-06    0.0011     128     248 ..     206     342 ..     193     350 .. 0.70

  Alignments for each domain:
  == domain 1    score: 15.4 bits;  conditional E-value: 1.4e-06
   TIGR00990 128 aklkekGnkayrnkdfdkaielyskalll.......kedP............vyysnraacynaladlekvvedttaaleldpdyvkalnrranaydqlgkyadalldltassliddfrdeqsaqaverllkkfaeskak 248
                  k k kG +a+++ ++ +a+ely  a ++          P              + n+a+c   ++++ +  +   + l+ +p+ vkal rr +a  q++ +  +  dl   +  d  + +++ ++     +k   sk  
  MMETSP1137-20121227|8579_1 206 NKWKAKGTEAFKQSKWAEALELYGDAAMIldgayppL--PeadeaegksaliSCWLNQATCSLKMSEYAEAEASCSKVLDKEPENVKALFRRGTARMQMSEFDASKADLREAARLDP-KSKEIREMFAACQEKAKASKSS 342
                 5778999999999999999999976644412222110..1222222222221246799********************************************999999876655443.4455555555555555555555 PP

>> TIGR02552  LcrH_SycD: type III secretion low calcium response chaperone LcrH/SycD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.0     0.064        52      63      81 ..     216     234 ..     206     247 .. 0.80
   2 !   14.7   1.0   5.1e-06    0.0042      55     129 ..     258     332 ..     255     342 .. 0.85

  Alignments for each domain:
  == domain 1    score: 1.4 bits;  conditional E-value: 0.064
   TIGR02552  63 qalkeyeeAiaaYalaaal 81 
                  ++++++eA++ Y+ aa++
  MMETSP1137-20121227|8579_1 216 FKQSKWAEALELYGDAAMI 234
                 57899*********99987 PP

  == domain 2    score: 14.7 bits;  conditional E-value: 5.1e-06
   TIGR02552  55 wlgLaaclqalkeyeeAiaaYalaaaldlddprpvyhaaecllalgekeeAlkaLklaieiaeekeeyselkera 129
                 wl  a c  +++ey+eA a  +  +  ++++ +++++++   +++ e   ++++L+ a++++ +++e  e+   +
  MMETSP1137-20121227|8579_1 258 WLNQATCSLKMSEYAEAEASCSKVLDKEPENVKALFRRGTARMQMSEFDASKADLREAARLDPKSKEIREMFAAC 332
                 78889********************************************************99888765553333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (351 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        83  (0.020234); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.30u 0.12s 00:00:00.42 Elapsed: 00:00:00.43
# Mc/sec: 1077.40
//
Query:       MMETSP1137-20121227|8580_1  [L=491]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (491 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        71  (0.0173086); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.18s 00:00:00.51 Elapsed: 00:00:00.36
# Mc/sec: 1800.18
//
Query:       MMETSP1137-20121227|8581_1  [L=370]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (370 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       100  (0.0243784); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.16s 00:00:00.44 Elapsed: 00:00:00.45
# Mc/sec: 1085.24
//
Query:       MMETSP1137-20121227|8582_1  [L=457]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (457 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        81  (0.0197465); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.15s 00:00:00.47 Elapsed: 00:00:00.38
# Mc/sec: 1587.34
//
Query:       MMETSP1137-20121227|8583_1  [L=581]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     5e-198  656.6  18.7   6.3e-198  656.3  12.9    1.0  1  TIGR02348 GroEL: chaperonin GroL
      5e-33  112.4  14.7    3.4e-24   83.3   3.7    2.9  3  TIGR02339 thermosome_arch: thermosome, various subunits, archaeal
    2.8e-25   86.4   5.9    8.7e-18   61.7   0.8    2.2  2  TIGR02345 chap_CCT_eta: T-complex protein 1, eta subunit
    2.5e-21   73.7   6.9    2.3e-18   63.9   0.6    2.1  2  TIGR02341 chap_CCT_beta: T-complex protein 1, beta subunit
      8e-21   72.0   6.1    3.2e-18   63.4   1.1    2.5  3  TIGR02342 chap_CCT_delta: T-complex protein 1, delta subunit
    1.3e-19   68.0   2.7    1.3e-19   68.0   1.9    2.8  3  TIGR02343 chap_CCT_epsi: T-complex protein 1, epsilon subunit
    9.6e-19   65.3  10.2    1.6e-17   61.3   1.8    3.1  3  TIGR02340 chap_CCT_alpha: T-complex protein 1, alpha subunit
    1.4e-17   61.2   5.2    2.1e-14   50.7   0.8    2.2  2  TIGR02344 chap_CCT_gamma: T-complex protein 1, gamma subunit
    1.4e-13   48.0   6.2    1.8e-09   34.5   0.5    2.3  2  TIGR02347 chap_CCT_zeta: T-complex protein 1, zeta subunit
    1.7e-13   47.7   3.4    2.2e-10   37.4   0.1    2.2  2  TIGR02346 chap_CCT_theta: T-complex protein 1, theta subunit


Domain annotation for each model (and alignments):
>> TIGR02348  GroEL: chaperonin GroL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  656.3  12.9  1.5e-200  6.3e-198       2     525 ..      26     549 ..      25     550 .. 0.98

  Alignments for each domain:
  == domain 1    score: 656.3 bits;  conditional E-value: 1.5e-200
   TIGR02348   2 keikfdeearkalekGvdkladavkvtlGPkgrnvvleksfGaPkitkdGvtvakeieledkfenlGaklvkevasktndvaGdGtttatvlaqaivkeGlknvaaGanpielkrGiekavekvveelkklskevkdkeeiaqvatisanndeeiGeliaeamekvgkdGvitveesksletelevveGmqfdrGyvspyfvtdaekmevelenplilitdkkisavkdllPllekvaksgkplliiaedvegealatlvvnklrgvlkvaavkaPgfGdrrkamlediailtggqviseelglkleevtleklGkakkvtvdkdettivegagekeaikerveqikaqieetesdydkeklqerlaklaGGvavikvGaatetelkekkarvedalnatraaveeGivaGGGvallraaeklee..lkeksedekvGveivkraleaPlrqiaenaGkdgavvvekvkekkdeevGfnaatdeyedlveaGiidpakvtrsalqnaasiagllltteavvadkpe 525
                  e++f +e+r+al +G+d++a+avkvtlGPkgrnvvle+s+G P++++dGvt+a++iel+d+  n+Gakl+ evaskt+++aGdGttt+tvlaqa+v eGlk va+Ganpi+++rG+ +a + + ee+  l+k+v+++++++++a i+++ +e +G+ ia  +++vg++G   ve++++l++e+e++eGm+ drG+vspyfv ++e++ +elenp +l+td+k+ ++++l+Plle+v+ s +p+liiae+v geal++lv+nk+rgvl+v+ +k PgfGdrr+++ledia +tgg+ ++e+lgl+le +t+e+lG+a++v v+k++tt++++ ++ ea++er+++i+a+ eet+s++dkek  er+akl G +  ikvGaatetelk+kk+r edaln+ +aa++eG+v+GGG +l+ + ++ ++  + ++ e+++  v+i+ ra++ P+ qia+naG +g++++ek k+k ++ +G+naat+++e+l+e+G+idpa vt++a+ n++sia+ +ltt a++++ + 
  MMETSP1137-20121227|8583_1  26 TEVTFGDESRQALLAGIDAVANAVKVTLGPKGRNVVLERSYGVPEVVNDGVTIARDIELDDPKANVGAKLLVEVASKTDQKAGDGTTTSTVLAQALVTEGLKLVASGANPIAIQRGLYTASNMLAEEIGMLAKPVDSDDDLKNIAIIATG-SEAMGKTIATCFARVGQNGATMVEDGQTLTDEIEFTEGMEIDRGFVSPYFVKNQETQLCELENPRVLVTDRKLGNMQELVPLLEQVVASKEPILIIAEEVTGEALSSLVLNKMRGVLDVCVIKPPGFGDRRRSYLEDIATITGGTFVTEQLGLSLEGITMEMLGRAQRVAVSKERTTMIATGEHMEAVAERIKKIRAEAEETDSQFDKEKAXERIAKLGGAIGRIKVGAATETELKDKKLRYEDALNSVKAAMAEGVVPGGGSTLVYLLRTKDKimAAMEDEEQRFAVDILFRAMQYPIMQIASNAGAEGSIILEKCKDK-EFGFGWNAATGNFENLLESGVIDPATVTKQAILNSCSIAASVLTTSALITEVKT 549
                 6899*********************************************************************************************************************************************99888.699*********************************************************************************************************************************************************************************************************************************************************************9988888777423445558999********************************99.78************************************************9875 PP

>> TIGR02339  thermosome_arch: thermosome, various subunits, archaeal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.3   3.7   8.3e-27   3.4e-24      10     163 ..      27     182 ..      23     212 .. 0.87
   2 ?    0.9   0.0     0.076        31     312     357 ..     306     353 ..     302     376 .. 0.75
   3 !   33.3   0.2   1.2e-11   4.8e-09     386     518 ..     417     544 ..     399     546 .. 0.82

  Alignments for each domain:
  == domain 1    score: 83.3 bits;  conditional E-value: 8.3e-27
   TIGR02339  10 qrtkgrdalksniaaakavaeavkstlGPrGlDkmLvdslGdvtitnDGatilkemdiehP....aakllvevaktqdeevgDGtttavvlaGeLlekaedLleqdihPtviveGyrkaaekalevideiaekidvedkellkkvaetsltskavaee 163
                 + t g ++++  +a   ava+avk tlGP+G + +L  s G   + nDG+ti +++++++P    +akllveva   d+++gDGttt  vla +L++++ +L+ ++  P  i +G  +a++   e i  +a+ +d +d   lk++a  +  s a++++
  MMETSP1137-20121227|8583_1  27 EVTFGDESRQALLAGIDAVANAVKVTLGPKGRNVVLERSYGVPEVVNDGVTIARDIELDDPkanvGAKLLVEVASKTDQKAGDGTTTSTVLAQALVTEGLKLVASGANPIAIQRGLYTASNMLAEEIGMLAKPVDSDD--DLKNIAIIATGSEAMGKT 182
                 55677888888888889********************************************4444479*******************************************************************996..789998888777777533 PP

  == domain 2    score: 0.9 bits;  conditional E-value: 0.076
   TIGR02339 312 kksDieklaratGakivs.....slkeieesdLGeaelveerkvgedklvf 357
                 ++s +e +a +tG+  v+     sl+ i+ + LG+a++v  +k    +++ 
  MMETSP1137-20121227|8583_1 306 RRSYLEDIATITGGTFVTeqlglSLEGITMEMLGRAQRVAVSKE---RTTM 353
                 57889999999999999844444589999999999999976554...4444 PP

  == domain 3    score: 33.3 bits;  conditional E-value: 1.2e-11
   TIGR02339 386 leDalkvvksvledgkvvaGgGavevelakrlreyaakieGreq.laveafadaleeiprilaenaGldpidalvelRakhekegnknagvdvftgeiedmlelgvieplkvkeqaiksateaatlilriDdvi 518
                  eDal++vk+++++g vv+GgG++ v l +   +  a +e  eq  av+    a+    + +a naG +   +l + +      ++   g +  tg+ e+ le gvi+p++v +qai  +   a+ +l    +i
  MMETSP1137-20121227|8583_1 417 YEDALNSVKAAMAEG-VVPGGGSTLVYLLRTKDKIMAAMEDEEQrFAVDILFRAMQYPIMQIASNAGAEGSIILEKCKD-----KEFGFGWNAATGNFENLLESGVIDPATVTKQAILNSCSIAASVLTTSALI 544
                 68*********9987.899***999998766666667777777648**********************98655544432.....3578****************************998888888888766655 PP

>> TIGR02345  chap_CCT_eta: T-complex protein 1, eta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.7   0.8   2.1e-20   8.7e-18      27     154 ..      42     169 ..      26     208 .. 0.84
   2 !   27.1   0.2   6.4e-10   2.6e-07     379     518 ..     410     544 ..     396     549 .. 0.85

  Alignments for each domain:
  == domain 1    score: 61.7 bits;  conditional E-value: 2.1e-20
   TIGR02345  27 cvaiaeilkttlGPrGmdklivskek.avvsndGatilklldivhPa....akllvdiaksqdsevGdGttsvvvlagellkeakplieeglhpqliiralrealklaieklkeiaveldeeksekrevlekl 154
                 + a+a+++k tlGP+G + +++ +   + v ndG ti + +++  P     akllv++a   d+  GdGtt+ +vla  l+ e  +l+  g +p  i r+l +a ++  e++  +a  +d++ ++    l+++
  MMETSP1137-20121227|8583_1  42 IDAVANAVKVTLGPKGRNVVLERSYGvPEVVNDGVTIARDIELDDPKanvgAKLLVEVASKTDQKAGDGTTTSTVLAQALVTEGLKLVASGANPIAIQRGLYTASNMLAEEIGMLAKPVDSD-DD----LKNI 169
                 567899***************9999889****************9962333699***********************************************************999999943.34....2333 PP

  == domain 2    score: 27.1 bits;  conditional E-value: 6.4e-10
   TIGR02345 379 leeaerslhdaimivrralkakkivaGGGaielelskllrekskkidgk.qqliieavakaleviPrslaenaGfdsieilnklrkkhakkgekwaGvdieteeildaleafvwePllvkknalkaateaaatilsvdeti 518
                 l++ +   +da+  v+ a+ a+ +v+GGG++ ++l ++  ++   +++  q++ ++ + +a++    ++a+naG +   il+k + k     e  +G +  t +  + le+ v +P+ v k a+  +++ aa++l+    i
  MMETSP1137-20121227|8583_1 410 LKDKKLRYEDALNSVKAAM-AEGVVPGGGSTLVYLLRTKDKIMAAMEDEeQRFAVDILFRAMQYPIMQIASNAGAEGSIILEKCKDK-----EFGFGWNAATGNFENLLESGVIDPATVTKQAILNSCSIAASVLTTSALI 544
                 5555566789999999887.678**************99998887776516799**********99***************997654.....5568999999999****************************99876665 PP

>> TIGR02341  chap_CCT_beta: T-complex protein 1, beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.9   0.6   5.6e-21   2.3e-18      12     176 ..      31     193 ..      24     249 .. 0.76
   2 !   13.1   0.4   1.4e-05    0.0058     359     506 ..     394     539 ..     388     550 .. 0.78

  Alignments for each domain:
  == domain 1    score: 63.9 bits;  conditional E-value: 5.6e-21
   TIGR02341  12 aenarlssfvgaiavgdlvkstlgpkgmdkillsasseasivvtndgatilksialdnpa....akvlvdiskvqddevgdgttsvtvlaaellreaeklvnkkihpqtiiegyrlatkaalealkksavdnssdkvkfredllkiarttlsskilsqd.kdhfaklavd 176
                 ++++r + + g  av + vk tlgpkg + +l  +       v ndg ti ++i ld+p     ak+lv+++   d++ gdgtt+ tvla  l+ e  klv+    p +i  g  +a+++  e +   a    sd     +dl +ia  + +s  + +     fa++  +
  MMETSP1137-20121227|8583_1  31 GDESRQALLAGIDAVANAVKVTLGPKGRNVVLERSYG--VPEVVNDGVTIARDIELDDPKanvgAKLLVEVASKTDQKAGDGTTTSTVLAQALVTEGLKLVASGANPIAIQRGLYTASNMLAEEIGMLAKPVDSD-----DDLKNIAIIATGSEAMGKTiATCFARVGQN 193
                 5667778888999***************999986655..67899*************7752222789**********************************************9999988777665544433334.....688888888887777766513456666555 PP

  == domain 2    score: 13.1 bits;  conditional E-value: 1.4e-05
   TIGR02341 359 geact.ivlrgatqqildeaerslhdalavlsqtvkesrtvlgggcaellmakav.eeeaqkvagkkalaveafakalrqlptiladnagfdsaelvaklraahaegnstagldleegeiadlrklgivesykl.kravvssaaeaaevll 506
                 g a   i +  at+  l + +    dal  +   ++e  +v ggg++ + + ++  +  a  ++  +  av+   +a++     +a nag + + ++ k + +    +   g +   g+  +l + g+++   + k+a++ s++ aa vl 
  MMETSP1137-20121227|8583_1 394 GGAIGrIKVGAATETELKDKKLRYEDALNSVKAAMAEG-VVPGGGSTLVYLLRTKdKIMAAMEDEEQRFAVDILFRAMQYPIMQIASNAGAEGSIILEKCKDK----EFGFGWNAATGNFENLLESGVIDPATVtKQAILNSCSIAASVLT 539
                 555441455567888899999999****9999998886.66777777665555550557888899999*********9887788**********999988765....4568999999************9777647888999999998875 PP

>> TIGR02342  chap_CCT_delta: T-complex protein 1, delta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.4   1.1   7.7e-21   3.2e-18      11     150 ..      35     176 ..      30     209 .. 0.83
   2 ?   -2.1   0.0      0.54   2.2e+02     261     341 ..     253     344 ..     244     357 .. 0.70
   3 !   10.0   0.1   0.00012     0.047     384     510 ..     418     540 ..     398     547 .. 0.82

  Alignments for each domain:
  == domain 1    score: 63.4 bits;  conditional E-value: 7.7e-21
   TIGR02342  11 rtsnivaakavadairtslGpkGmdkliqekkGeviitndGatilkqlevlhpa....akllvelskaqdieaGdGttsvvvlaGalldaaekllekgihptiisesfqsaadealkilkelsipvdlsdrealiksattslss 150
                 r++ +    ava+a++ +lGpkG + +++ + G   + ndG ti +++e+  p     akllve++   d +aGdGtt+  vla al+    kl++ g  p  i  ++ +a +   + +  l++pvd +d+ + i  + t   s
  MMETSP1137-20121227|8583_1  35 RQALLAGIDAVANAVKVTLGPKGRNVVLERSYGVPEVVNDGVTIARDIELDDPKanvgAKLLVEVASKTDQKAGDGTTTSTVLAQALVTEGLKLVASGANPIAIQRGLYTASNMLAEEIGMLAKPVDSDDDLKNIAIIAT--GS 176
                 777778889*****************************************9996333369*****************************************************99999999*****98776544444433..33 PP

  == domain 2    score: -2.1 bits;  conditional E-value: 0.54
   TIGR02342 261 yilnlvkkikkaganvlliqksilrdavndlalhfla.kkkilvvk.....diereevefisktlGckpva.....sidkltadklGkaelv 341
                  ++ l +++ +++  +l+i   +  +a++ l l  +   +++ v+k     d  r  +e i+ + G + v+     s++ +t ++lG a+ v
  MMETSP1137-20121227|8583_1 253 ELVPLLEQVVASKEPILIIAEEVTGEALSSLVLNKMRgVLDVCVIKppgfgDRRRSYLEDIATITGGTFVTeqlglSLEGITMEMLGRAQRV 344
                 56778889999999999999999999999998865541567778876665566777777777777766665222235777778888877765 PP

  == domain 3    score: 10.0 bits;  conditional E-value: 0.00012
   TIGR02342 384 hdalcvirslvkkraliaGGGapeieialklskkarelkGv.esyivrafadalevipytlaenaGlnpikvvtelrnrhaqGektaGisvrkggitdileeevlqpllvtksavtlasetvrsilki 510
                  dal  +++ +   ++++GGG+  + + +   k    ++ + + + v     a++   + +a naG +   ++ + +    + e   G +   g+  ++le  v+ p+ vtk a+  +     s+l  
  MMETSP1137-20121227|8583_1 418 EDALNSVKAAMA-EGVVPGGGSTLVYLLRTKDKIMAAMEDEeQRFAVDILFRAMQYPIMQIASNAGAEGSIILEKCK----DKEFGFGWNAATGNFENLLESGVIDPATVTKQAILNSCSIAASVLTT 540
                 688888888765.589**********999988888888765167999999*****9999*******99866654444....4466799***************************9988888888765 PP

>> TIGR02343  chap_CCT_epsi: T-complex protein 1, epsilon subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.0   1.9   3.2e-22   1.3e-19      25     178 ..      31     188 ..      25     207 .. 0.87
   2 ?   -1.0   0.2      0.27   1.1e+02     325     378 ..     310     363 ..     307     372 .. 0.78
   3 ?    2.7   0.1      0.02       8.3     396     520 ..     416     535 ..     399     547 .. 0.72

  Alignments for each domain:
  == domain 1    score: 68.0 bits;  conditional E-value: 3.2e-22
   TIGR02343  25 GleakksniaaakavasilrtslGpkGldkiliskdgditvtndGatilekmdldeei....akllvelsksqdeeiGdGttgvvvlasalleqaeklldkGihpikiaeGfekaakvavekleeiaeeisvdednketllkaaktslgskivskskr 178
                 G e+ ++ +a   ava+ ++ +lGpkG + +l    g   v ndG ti ++++ld++     akllve++   d++ GdGtt+  vla al+ +  kl+  G  pi i  G  +a+++  e++  +a+ ++ d d k+  + a+ +    k +  +  
  MMETSP1137-20121227|8583_1  31 GDESRQALLAGIDAVANAVKVTLGPKGRNVVLERSYGVPEVVNDGVTIARDIELDDPKanvgAKLLVEVASKTDQKAGDGTTTSTVLAQALVTEGLKLVASGANPIAIQRGLYTASNMLAEEIGMLAKPVDSDDDLKNIAIIATGSEAMGKTIATCFA 188
                 6677888888999******************************************953222479*********************************************************************9999876666555544555555544 PP

  == domain 2    score: -1.0 bits;  conditional E-value: 0.27
   TIGR02343 325 leliaiatgGrivprfeelseeklGkaklvreksfGttkdrllvieqskeskav 378
                 le ia  tgG  v+    ls e +    l r +++  +k+r  +i   ++  av
  MMETSP1137-20121227|8583_1 310 LEDIATITGGTFVTEQLGLSLEGITMEMLGRAQRVAVSKERTTMIATGEHMEAV 363
                 8999*********99888888877777777777888888888887777776666 PP

  == domain 3    score: 2.7 bits;  conditional E-value: 0.02
   TIGR02343 396 slhdalcvvrnlikdsrivyGGGaaeiacslaveeeadklsgveq.yairafaealeeiplalaensGldpietlsevkakqlkeknpalGvdcleeGtndmkelkvletligkkqqillatqlvk 520
                   +dal  v+  +  + +v GGG++ + +  + +++   ++ +eq +a+  + +a++   + +a n+G +    l      + k+k + +G +  +   +++ e  v+++    kq il +  +  
  MMETSP1137-20121227|8583_1 416 RYEDALNSVKAAM-AEGVVPGGGSTLVYLLRTKDKIMAAMEDEEQrFAVDILFRAMQYPIMQIASNAGAEGSIILE-----KCKDKEFGFGWNAATGNFENLLESGVIDPATVTKQAILNSCSIAA 535
                 5567787777766.467999*****999999999987777766652799999****99999******998654444.....455566667776666666667777777776666666665555555 PP

>> TIGR02340  chap_CCT_alpha: T-complex protein 1, alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.3   1.8   3.9e-20   1.6e-17       6     124 ..      27     149 ..      23     204 .. 0.82
   2 ?   -1.4   0.0      0.38   1.5e+02     312     350 ..     310     347 ..     304     381 .. 0.67
   3 !    7.3   0.1   0.00085      0.35     387     528 ..     416     545 ..     396     554 .. 0.72

  Alignments for each domain:
  == domain 1    score: 61.3 bits;  conditional E-value: 3.9e-20
   TIGR02340   6 erksGedvrkqnvlavvavanivktslGPvGldkmlvddvGdvtitndGatilkklevehPa....akvlvelaqlqdkevGdGttsvvilaaellkradelvkrkvhPtsvisGyrlalkea 124
                 e + G++ r+  +  + avan+vk +lGP G + +l  + G   + ndG ti + +e+++P     ak+lve+a++ d+  GdGtt+  +la +l+ ++ +lv++   P ++  G+  a +  
  MMETSP1137-20121227|8583_1  27 EVTFGDESRQALLAGIDAVANAVKVTLGPKGRNVVLERSYGVPEVVNDGVTIARDIELDDPKanvgAKLLVEVASKTDQKAGDGTTTSTVLAQALVTEGLKLVASGANPIAIQRGLYTASNML 149
                 56678888888889999********************************************62333699*********************************************998887643 PP

  == domain 2    score: -1.4 bits;  conditional E-value: 0.38
   TIGR02340 312 lkriakatGatlvssladleGeetleasllGeaeevvee 350
                 l  ia +tG+t v+    l+  e +   +lG a++v   
  MMETSP1137-20121227|8583_1 310 LEDIATITGGTFVTEQLGLSL-EGITMEMLGRAQRVAVS 347
                 566777777777766655554.34455567776666433 PP

  == domain 3    score: 7.3 bits;  conditional E-value: 0.00085
   TIGR02340 387 slhdalcvvkrtleskkvvaGgGaveaalsiyleelattlgsreq.laiaefaealliiPkvlavnaakdstelvaklralhaaaqlkeekkklkflGldlsngkirdnveaGvlePavskvkslkfateaaitilriddlik 528
                    dal  vk ++ ++ vv+GgG+  + l    +++  +++  eq  a+    +a+     ++a+na+ + + ++ k             k+k   +G +  +g+ ++ +e Gv++Pa    + +  +   a ++l    li+
  MMETSP1137-20121227|8583_1 416 RYEDALNSVKAAM-AEGVVPGGGSTLVYLLRTKDKIMAAMEDEEQrFAVDILFRAMQYPIMQIASNAGAEGSIILEK------------CKDKEFGFGWNAATGNFENLLESGVIDPATVTKQAILNSCSIAASVLTTSALIT 545
                 5579999999887.5789******99999999999999998887647999999***999999*****9887655433............233344567777788888888888888875555555555555556666666665 PP

>> TIGR02344  chap_CCT_gamma: T-complex protein 1, gamma subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.7   0.8   5.2e-17   2.1e-14      14     153 ..      31     174 ..      23     217 .. 0.85
   2 !   12.2   0.1   2.5e-05      0.01     387     516 ..     416     540 ..     399     550 .. 0.81

  Alignments for each domain:
  == domain 1    score: 50.7 bits;  conditional E-value: 5.2e-17
   TIGR02344  14 GrkaqlsniqaakavadiirttlGpkamlkmlldplGgivltndGnailreidvahpa....akslielsrtqdeevGdGttsviilaGellaaaepfleknihptvivraykkaledalkvleelsipvdvedeakllklvks 153
                 G +++ + +    ava+ ++ tlGpk    +l  + G   + ndG +i r+i+++ p     ak l+e++   d++ GdGtt+  +la  l+++  +++     p  i r++++a +   + +  l+ pvd +d+ k   ++ +
  MMETSP1137-20121227|8583_1  31 GDESRQALLAGIDAVANAVKVTLGPKGRNVVLERSYGVPEVVNDGVTIARDIELDDPKanvgAKLLVEVASKTDQKAGDGTTTSTVLAQALVTEGLKLVASGANPIAIQRGLYTASNMLAEEIGMLAKPVDSDDDLKNIAIIAT 174
                 55555555666679*************9999999999999***************9962333699*******************************************************************999888777765 PP

  == domain 2    score: 12.2 bits;  conditional E-value: 2.5e-05
   TIGR02344 387 nlqdalavarnvllepklvpGGGatelavsvklkkkakklegveq.lpyeavadaleviprtlvqncGvnvirtltelrakhaqeekkalGidGetGkivdmkekgiweplavklqtiktaiesavlllri 516
                   +dal+ ++  + e+ +vpGGG+t +   ++  k  +++e+ eq   +    +a++     ++ n+G++    l + + k     +  +G +  tG+  ++ e g+ +p +v +q+i  +   a+ +l  
  MMETSP1137-20121227|8583_1 416 RYEDALNSVKAAMAEG-VVPGGGSTLVYLLRTKDKIMAAMEDEEQrFAVDILFRAMQYPIMQIASNAGAEGSIILEKCKDK-----EFGFGWNAATGNFENLLESGVIDPATVTKQAILNSCSIAASVLTT 540
                 5689999999988876.89**********99999999999998761567778899999889999*****987777655443.....5789**************************998877777666655 PP

>> TIGR02347  chap_CCT_zeta: T-complex protein 1, zeta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.5   0.5   4.4e-12   1.8e-09      24     131 ..      41     152 ..      25     184 .. 0.85
   2 !   16.3   0.3   1.4e-06   0.00059     378     522 ..     403     543 ..     334     552 .. 0.85

  Alignments for each domain:
  == domain 1    score: 34.5 bits;  conditional E-value: 4.4e-12
   TIGR02347  24 aakglqdvlktnlGPkGtlkmlvsgaGdikltkdGnvllkelqiqhPtas....liaraaaaqdditGdGttstviligellkqaerlieeglhPrilteGleiakkealef 131
                 +  ++++ +k  lGPkG   +l  + G  ++  dG ++ +++++ +P a+    l+  +a+  d+ +GdGtt++ +l+++l+    +l++ g  P  +  Gl +a + + e 
  MMETSP1137-20121227|8583_1  41 GIDAVANAVKVTLGPKGRNVVLERSYGVPEVVNDGVTIARDIELDDPKANvgakLLVEVASKTDQKAGDGTTTSTVLAQALVTEGLKLVASGANPIAIQRGLYTASNMLAEE 152
                 455678899**************************************8762222677799******************************************9998876655 PP

  == domain 2    score: 16.3 bits;  conditional E-value: 1.4e-06
   TIGR02347 378 kgpndhtlkqikdavrdGlravknaiedkcvvaGagafeiallkklkeekksvk.GkaklgveafaeallviPkvlvensGydvqevlvkledeadearevvgvdletgesivaelkgiwdnysvkkqllssatviasqlllvdev 522
                  ++++ +lk  k    d l +vk a+ + +vv+G g+  + ll++  +    ++   ++++v+++  a+      +++n+G +   +l k +d+        g +  tg+     ++g+ d  +v kq++  +  ia+ +l    +
  MMETSP1137-20121227|8583_1 403 GAATETELKDKKLRYEDALNSVKAAMAE-GVVPGGGSTLVYLLRTKDKIMAAMEdEEQRFAVDILFRAMQYPIMQIASNAGAEGSIILEKCKDKE----FGFGWNAATGNFENLLESGVIDPATVTKQAILNSCSIAASVLTTSAL 543
                 5677888888899999*********985.799999999999888777666666516789**********9888899*****98876666655543....4579999999999999**************99999999998876655 PP

>> TIGR02346  chap_CCT_theta: T-complex protein 1, theta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.4   0.1   5.3e-13   2.2e-10      27     137 ..      42     156 ..      31     185 .. 0.84
   2 !   11.0   0.3   5.6e-05     0.023     363     512 ..     396     539 ..     383     549 .. 0.77

  Alignments for each domain:
  == domain 1    score: 37.4 bits;  conditional E-value: 5.3e-13
   TIGR02346  27 ikelseitrtslGPngmnklvinhleklfvtnDaatilrelevqhPa....akllvlaskaqeeelGDgtnlvlvlagelLekaeelirlGlspseiikGyelalkkalevLeel 137
                 i  +++ ++ +lGP+g+n ++        v nD +ti r++e+  P     akllv+++ + +++ GDgt    vla +l+++  +l+  G +p  i +G  +a +   e++  l
  MMETSP1137-20121227|8583_1  42 IDAVANAVKVTLGPKGRNVVLERSYGVPEVVNDGVTIARDIELDDPKanvgAKLLVEVASKTDQKAGDGTTTSTVLAQALVTEGLKLVASGANPIAIQRGLYTASNMLAEEIGML 156
                 44568899999*******99999999999*****************72333589**********************************************999999888877654 PP

  == domain 2    score: 11.0 bits;  conditional E-value: 5.6e-05
   TIGR02346 363 kistivLrGstknllddieraidDGvnvvkalvkdsrllpGagateieLakklkky.aeklkgleqyaikkfaeafeiiPrtlaenaGlnanevlskLyaahkkgnkslgidiekesdavkdvkeekiyDllaakkfaiklateaavtvLk 512
                 +i+ i +  +t++ l d     +D +n+vka++ ++ ++pG+g+t + L +   k+ a  + + +++a+    +a++     +a naG +   +l+k        +k+ g   ++ + + +++ e+ + D  +  k ai  +   a  vL 
  MMETSP1137-20121227|8583_1 396 AIGRIKVGAATETELKDKKLRYEDALNSVKAAMAEG-VVPGGGSTLVYLLRTKDKImAAMEDEEQRFAVDILFRAMQYPIMQIASNAGAEGSIILEKCK------DKEFGFGWNAATGNFENLLESGVIDPATVTKQAILNSCSIAASVLT 539
                 56666677899999***9999***********9876.89********99987776515556667789*****9999998899*******9998887653......3345555555555567777777777777777777777776666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (581 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       216  (0.0526572); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                        18  (0.0043881); expected 4.1 (0.001)
Passed Fwd filter:                        10  (0.00243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.59u 0.18s 00:00:00.77 Elapsed: 00:00:00.69
# Mc/sec: 1111.39
//
Query:       MMETSP1137-20121227|8584_1  [L=82]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (82 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        49  (0.0119454); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:00.28
# Mc/sec: 386.54
//
Query:       MMETSP1137-20121227|8586_1  [L=251]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0013   16.8   0.0        2.6    6.2   0.0    3.6  4  TIGR02620 cas_VVA1548: putative CRISPR-associated protein, VVA1548 family
      0.004   14.0   0.2      0.013   12.4   0.0    1.7  2  TIGR01133 murG: undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase


Domain annotation for each model (and alignments):
>> TIGR02620  cas_VVA1548: putative CRISPR-associated protein, VVA1548 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.2   0.0    0.0013       2.6       4      48 ..      13      58 ..      10      63 .. 0.81
   2 !    4.4   0.0    0.0048       9.8      15      49 ..      82     116 ..      70     123 .. 0.86
   3 ?    0.8   0.0     0.064   1.3e+02      15      34 ..     139     158 ..     126     176 .. 0.76
   4 ?   -0.6   0.0      0.17   3.6e+02       5      37 ..     186     219 ..     183     224 .. 0.77

  Alignments for each domain:
  == domain 1    score: 6.2 bits;  conditional E-value: 0.0013
   TIGR02620  4 srhaGakeWvs.qqgiqiDkfvdhldlieiseGDkviGtlPvslaa 48
                +  aGa+ W +   ++ i+++ +++dl+e   G+  +  +  slaa
  MMETSP1137-20121227|8586_1 13 CETAGAEGWKAlAESLTINCVLTSIDLSESRFGNGDFAAVAASLAA 58
                6789*****65379*************9988777767777776666 PP

  == domain 2    score: 4.4 bits;  conditional E-value: 0.0048
   TIGR02620  15 qqgiqiDkfvdhldlieiseGDkviGtlPvslaad 49 
                   ++q++++ +++dl+  s G+  +G +  sla +
  MMETSP1137-20121227|8586_1  82 AASLQVNRVLKSVDLSCCSYGNGGFGAVAASLASN 116
                 5689************************9999976 PP

  == domain 3    score: 0.8 bits;  conditional E-value: 0.064
   TIGR02620  15 qqgiqiDkfvdhldlieise 34 
                   ++++D++ ++ldl+  + 
  MMETSP1137-20121227|8586_1 139 AESLKLDRVLKSLDLSCCNF 158
                 5799**********986655 PP

  == domain 4    score: -0.6 bits;  conditional E-value: 0.17
   TIGR02620   5 rhaGakeWvs.qqgiqiDkfvdhldlieiseGDk 37 
                 r a  + W +   ++++++  ++++l+  ++GD+
  MMETSP1137-20121227|8586_1 186 REACVEGWKAlAESLKVNCALTSMNLSGAEAGDE 219
                 5566666743267999999999999999999996 PP

>> TIGR01133  murG: undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.0     0.054   1.1e+02      83     115 ..      27      60 ..      18      67 .. 0.69
   2 !   12.4   0.0   6.2e-06     0.013      74     114 ..      75     116 ..      54     135 .. 0.82

  Alignments for each domain:
  == domain 1    score: -0.6 bits;  conditional E-value: 0.054
   TIGR01133  83 vlkarrllkklkp.dvvvgfGGYvslPavlAakl 115
                  l+++++l++++  +  +g G +++++a+lAa +
  MMETSP1137-20121227|8586_1  27 SLTINCVLTSIDLsESRFGNGDFAAVAASLAANR 60 
                 55555555555531345899***********975 PP

  == domain 2    score: 12.4 bits;  conditional E-value: 6.2e-06
   TIGR01133  74 klllkllkavlkarrllkklk.pdvvvgfGGYvslPavlAak 114
                  + +++l a l+++r+lk+++  ++++g GG+ +++a+lA+ 
  MMETSP1137-20121227|8586_1  75 VESWRALAASLQVNRVLKSVDlSCCSYGNGGFGAVAASLASN 116
                 45678999***********9945789**************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (251 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        87  (0.0212092); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.22u 0.16s 00:00:00.38 Elapsed: 00:00:00.32
# Mc/sec: 1035.29
//
Query:       MMETSP1137-20121227|8587_1  [L=214]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.032   10.7   0.0      0.046   10.2   0.0    1.2  1  TIGR03268 methan_mark_3: putative methanogenesis marker protein 3


Domain annotation for each model (and alignments):
>> TIGR03268  methan_mark_3: putative methanogenesis marker protein 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   1.1e-05     0.046     257     302 ..     145     193 ..     120     205 .. 0.76

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 1.1e-05
   TIGR03268 257 rGavtvRnsGvge.G.rvYiyredrvssl.sHnvvGrvkkGieLidiae 302
                  G++++ n G ++ G + +i + d +     H v G+v+kG+e+++  e
  MMETSP1137-20121227|8587_1 145 PGTLSMANAGPDTnGsQFFICTSDTSFLDgKHCVFGKVTKGMEVVKAIE 193
                 5899999999775342688999988765437**************9765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (214 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        51  (0.012433); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.20u 0.16s 00:00:00.36 Elapsed: 00:00:00.28
# Mc/sec: 1008.77
//
Query:       MMETSP1137-20121227|8588_1  [L=354]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (354 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        65  (0.0158459); expected 82.0 (0.02)
Passed bias filter:                       42  (0.0102389); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.16s 00:00:00.43 Elapsed: 00:00:00.35
# Mc/sec: 1334.98
//
Query:       MMETSP1137-20121227|8589_1  [L=250]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (250 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        96  (0.0234032); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.14s 00:00:00.36 Elapsed: 00:00:00.36
# Mc/sec: 916.59
//
Query:       MMETSP1137-20121227|8590_1  [L=171]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (171 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        61  (0.0148708); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.15s 00:00:00.32 Elapsed: 00:00:00.31
# Mc/sec: 728.07
//
Query:       MMETSP1137-20121227|8592_1  [L=321]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (321 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       123  (0.0299854); expected 82.0 (0.02)
Passed bias filter:                      118  (0.0287665); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.13s 00:00:00.40 Elapsed: 00:00:00.39
# Mc/sec: 1086.37
//
Query:       MMETSP1137-20121227|8593_1  [L=150]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.2e-52  174.3   0.5    2.7e-52  174.1   0.4    1.1  1  TIGR03628 arch_S11P: archaeal ribosomal protein S11P
    6.6e-21   72.8   0.2    2.3e-20   71.0   0.1    1.7  1  TIGR03632 bact_S11: 30S ribosomal protein S11


Domain annotation for each model (and alignments):
>> TIGR03628  arch_S11P: archaeal ribosomal protein S11P
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  174.1   0.4   1.3e-55   2.7e-52       3     116 ..      28     141 ..      26     142 .. 0.98

  Alignments for each domain:
  == domain 1    score: 174.1 bits;  conditional E-value: 1.3e-55
   TIGR03628   3 giahiyssfnntiititdltGaetiakvsGGmvvkadrdessPyaamqaakkvaekakekgieglhikvraPGgsksksPGPGaqaairalaraGlkigriedvtPiPhdgtrr 116
                 +++hiy+sfn+t++++td +G eti+kv+GGm vkadrde+sPyaam aa+ va+k ke gi glhik+ra Gg+++k+PGPGaq+a+ralaraGlkigriedvtPiP d+trr
  MMETSP1137-20121227|8593_1  28 AVCHIYASFNDTFVHVTDPSGRETICKVTGGMKVKADRDEASPYAAMLAAQDVAAKCKELGIGGLHIKMRATGGNRTKTPGPGAQSALRALARAGLKIGRIEDVTPIPSDSTRR 141
                 799*************************************************************************************************************97 PP

>> TIGR03632  bact_S11: 30S ribosomal protein S11
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.0   0.1   1.1e-23   2.3e-20       7     113 ..      25     140 ..      19     143 .. 0.85

  Alignments for each domain:
  == domain 1    score: 71.0 bits;  conditional E-value: 1.1e-23
   TIGR03632   7 vsegvvhikatfnntivtvtdekGnvlswasaGavgfkGskk.stpyaaqlaaekaakkakelglkevevlvkG........pgagresairalqaaglevtsikdvtpiphnGcr 113
                 ++ +v+hi a+fn+t+v vtd +G     + +G +  k  +  ++pyaa laa+++a k kelg+  ++++++         pg+g +sa+ral+ agl++ +i+dvtpip + +r
  MMETSP1137-20121227|8593_1  25 LVLAVCHIYASFNDTFVHVTDPSGRETICKVTGGMKVKADRDeASPYAAMLAAQDVAAKCKELGIGGLHIKMRAtggnrtktPGPGAQSALRALARAGLKIGRIEDVTPIPSDSTR 140
                 566899******************998889999999999997257*********************9999986411222222677889***********************98887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (150 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        96  (0.0234032); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.17u 0.15s 00:00:00.32 Elapsed: 00:00:00.32
# Mc/sec: 618.70
//
Query:       MMETSP1137-20121227|8594_1  [L=88]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (88 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        71  (0.0173086); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.40
# Mc/sec: 290.38
//
Query:       MMETSP1137-20121227|8595_1  [L=395]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.2e-21   74.0   0.0    4.5e-14   50.0   0.0    2.4  3  TIGR01293 Kv_beta: voltage-dependent potassium channel beta subunit


Domain annotation for each model (and alignments):
>> TIGR01293  Kv_beta: voltage-dependent potassium channel beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   0.0   5.6e-09   2.3e-05      10      83 ..      31     112 ..      24     119 .. 0.84
   2 ?   -3.2   0.0      0.17   7.1e+02     103     127 ..     152     176 ..     147     179 .. 0.79
   3 !   50.0   0.0   1.1e-17   4.5e-14     131     318 ..     202     384 ..     192     385 .. 0.87

  Alignments for each domain:
  == domain 1    score: 21.4 bits;  conditional E-value: 5.6e-09
   TIGR01293  10 glrvsclglgtwvvfgsqisdeqaedllklayesginlfdiaevya.......agkaetelgkilkkk.g.wrrssyvittki 83 
                  l vs + lgt ++fgs   +++a ++l   +e g n++d+ae+y        ag++e  +g+ lk + g  +r  +vi++k+
  MMETSP1137-20121227|8595_1  31 SLNVSKVCLGT-MTFGSMSNQDTAFEILDRFIELGGNFIDTAEMYPvpvkaeyAGESEYIIGRWLKARaGrIKRDEIVIASKV 112
                 699********.59*****************************9953333344799999******96514458999***9998 PP

  == domain 2    score: -3.2 bits;  conditional E-value: 0.17
   TIGR01293 103 glkaslerlqleyvdivlanradps 127
                 + +asl rl +e +d+  ++ ++ +
  MMETSP1137-20121227|8595_1 152 SCEASLARLGIECLDLFQLHWPERH 176
                 56899*******9999888776655 PP

  == domain 3    score: 50.0 bits;  conditional E-value: 1.1e-17
   TIGR01293 131 eevvramtyvinqglalywgtsrwsaveimeaysvarqfnlippiveqaeyhlfqrekvelqlpe..lyhkigvgavtwsplalalvdskyddklpkaskatlkgyqwlkekvrseegrrqqarlkdlaalaeklgctlaqlaiawslrsegvssvllgassaeqlmeslgslqvllklsssvvleldai 318
                 + vv ++  +i +g    wg s  ++  + +a   a++  + pp+  q ++ l  r   e +l e    ++  +g+++++ l  +  ++ky  +   +++a+   +++  + +   +  r  a + + +ala+k g tla la aw++ +  +s+v++ga+s+ ql e+ +s  v   ls++++ e+d+i
  MMETSP1137-20121227|8595_1 202 DSVVSTIGALIAEGKVKEWGISNETSYGVAQACEAAKRNGVRPPVSIQNDFSLCYRI-FESELAEscSTKHYNIGLIAYGVLNGGALSGKYLRG---GATAS-SRFNFCSGFQPRYHSDRANAAIAEYMALADKHGMTLAALAQAWAFSRFYLSCVIIGATSTAQLEENCKSAYV--DLSPEILAEIDQI 384
                 678999999****************************************99876663.4445554115567889***************99655...44444.567888887777788899999***********************************************9876..69*********97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (395 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        97  (0.023647); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.32u 0.16s 00:00:00.48 Elapsed: 00:00:00.54
# Mc/sec: 965.48
//
Query:       MMETSP1137-20121227|8596_1  [L=284]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (284 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        62  (0.0151146); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.16s 00:00:00.37 Elapsed: 00:00:00.27
# Mc/sec: 1388.33
//
Query:       MMETSP1137-20121227|8598_1  [L=120]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (120 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        92  (0.0224281); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.14s 00:00:00.29 Elapsed: 00:00:00.28
# Mc/sec: 565.67
//
Query:       MMETSP1137-20121227|8599_1  [L=551]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.6e-08   31.5  17.3    7.4e-06   24.0   1.9    3.5  2  TIGR00880 2_A_01_02: multidrug resistance protein


Domain annotation for each model (and alignments):
>> TIGR00880  2_A_01_02: multidrug resistance protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.9   4.1   9.5e-06     0.039       2      81 ..      48     133 ..      47     164 .. 0.87
   2 !   24.0   1.9   1.8e-09   7.4e-06       5      93 ..     311     406 ..     306     447 .. 0.85

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 9.5e-06
   TIGR00880   2 lllagyAlgqlvvsplsglltdrvGrkpvllvglfifvlsqllfals.........snitvliiarilqGfgaaaalvagaaliadiik 81 
                  l ++yAl  l++sp +    + +G ++ ll+g +++ +  l f ++           ++v ++  +++Gf+a++ ++a ++++ad +k
  MMETSP1137-20121227|8599_1  48 ALYLSYALTALLFSPALL---SVLGARSSLLLGASLYCVYVLSFSAAlitpvdmaaVRFAVALVGGVVGGFAAGFLWAAQGTYFADNAK 133
                 67789**********877...899*********999999888887777799999999****************************9776 PP

  == domain 2    score: 24.0 bits;  conditional E-value: 1.8e-09
   TIGR00880   5 agyAlgqlvvsplsglltdrvGrkpvllvglfifvlsqllfals........snitvliiarilqGfgaaaalvagaaliadiikeeersvalglls 93 
                 a+ Al+ +++ + ++  ++r G++pv+l+gl+ f+  +ll+ ++        s+  +l+ + +lqG+g a    + +al+ad+++++  ++a++ ++
  MMETSP1137-20121227|8599_1 311 ALVALSAALLQLPFKWAASRCGKQPVMLLGLAAFLSLSLLVLTGppspdasaSTWLLLLSCYLLQGVGRACYEGTNKALYADFFPRDS-GAAFSNIV 406
                 67899999999999999**************************9******977777888899**********************9875.44444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (551 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       131  (0.0319356); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.14s 00:00:00.51 Elapsed: 00:00:00.56
# Mc/sec: 1275.89
//
Query:       MMETSP1137-20121227|8601_1  [L=714]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (714 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        68  (0.0165773); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.12s 00:00:00.55 Elapsed: 00:00:00.56
# Mc/sec: 1682.86
//
Query:       MMETSP1137-20121227|8602_1  [L=166]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        3.4    3.2   9.3        3.7    3.1   6.4    1.1  1  TIGR01299 synapt_SV2: synaptic vesicle protein SV2
        3.4    3.8  11.1          4    3.5   7.7    1.0  1  TIGR02442 Cob-chelat-sub: cobaltochelatase subunit
        3.6    4.9  10.8        4.6    4.5   7.5    1.1  1  TIGR02907 spore_VI_D: stage VI sporulation protein D
        9.5    1.5  21.3         11    1.3  14.7    1.0  1  TIGR00927 2A1904: K+-dependent Na+/Ca+ exchanger


Domain annotation for each model (and alignments):
>> TIGR01299  synapt_SV2: synaptic vesicle protein SV2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   6.4    0.0036       3.7      48      91 ..      61     101 ..      22     139 .. 0.57

  Alignments for each domain:
  == domain 1    score: 3.1 bits;  conditional E-value: 0.0036
   TIGR01299  48 rfeeeeddddyyapaetysrgeaaddeeegeasseateghdeed 91 
                   ee +dddd    ae+   g++ +d  ege+ss+a    d   
  MMETSP1137-20121227|8602_1  61 VAEESDDDDD--DEAESEATGDSGED-SEGEGSSDAEGVADATG 101
                 2222233333..33444445666666.56666666655444443 PP

>> TIGR02442  Cob-chelat-sub: cobaltochelatase subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   7.7    0.0039         4     312     424 ..      11     129 ..       4     144 .. 0.55

  Alignments for each domain:
  == domain 1    score: 3.5 bits;  conditional E-value: 0.0039
   TIGR02442 312 rkpfeeeqekeekkleekkeeakpdeekedes.eekekeeskkqe......eeepgkddekeedekeeaeeeaesaeevalepagkifrvkllavskarargasGrrsktrsdkrgryvk 424
                 ++p e+   ++++++ ++ +e +  ++ +de+ +++++ees+k +      +ee+++dd++e +++++ ++ + s  e +++++g + ++  l++++   +++  rr + + +k++ + k
  MMETSP1137-20121227|8602_1  11 KQPEENGSMRNRPDERKRIAESGGSNDVQDEAaDDDSDEESGKYGagaaqvAEESDDDDDDEAESEATGDSGEDSEGEGSSDAEGVADATGDLMPAQL-DERRRARREEKAWEKKNFVQK 129
                 44555554444455555555555444444444112222233333355555555555566666666666666666667777888888888888888776.444445665555555554444 PP

>> TIGR02907  spore_VI_D: stage VI sporulation protein D
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   7.5    0.0045       4.6     140     225 ..      36     124 ..      27     135 .. 0.75

  Alignments for each domain:
  == domain 1    score: 4.5 bits;  conditional E-value: 0.0045
   TIGR02907 140 aeldad.aredeeeeealeaeleftarkeaaeeeesldkpkveseadetaeqPaekeedeleisa..aeeaaleeekeeseeeeeveer 225
                 ++++++ a +d++ee   + +    + +e++++++   +++ + ++ e +e     +++ + + +    +a+l e++ +  ee   e++
  MMETSP1137-20121227|8602_1  36 NDVQDEaADDDSDEESGKYGAGAAQVAEESDDDDDDEAESEATGDSGEDSEGEGSSDAEGVADATgdLMPAQLDERRRARREEKAWEKK 124
                 5666774677777777788888889999999999999999999999888876555555555444447899***9999999998887744 PP

>> TIGR00927  2A1904: K+-dependent Na+/Ca+ exchanger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3  14.7     0.011        11     749     843 ..      11     104 ..       2     136 .. 0.33

  Alignments for each domain:
  == domain 1    score: 1.3 bits;  conditional E-value: 0.011
   TIGR00927 749 aeaeakgertgeeaeaeteaegekdeesggeaeqegeseekaeeeseGeiea.erkgedegegeieakeaevkGeeeeeeveaeeeteaeGdedeg 843
                 +++e++g +++   e++ +ae+  ++  ++ea++++ +ee ++        a e  ++d++e+e ea      Ge+ e+e  ++ e+ a+ + d  
  MMETSP1137-20121227|8602_1  11 KQPEENGSMRNRPDERKRIAESGGSNDVQDEAADDDSDEESGKYGAGAAQVAeESDDDDDDEAESEAT--GDSGEDSEGEGSSDAEGVADATGDLM 104
                 23333333333333333333333333333333333333333333222211110111122222222221..12222222222222222222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (166 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        89  (0.0216967); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.21u 0.18s 00:00:00.39 Elapsed: 00:00:00.31
# Mc/sec: 706.78
//
Query:       MMETSP1137-20121227|8604_1  [L=240]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (240 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        62  (0.0151146); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.15s 00:00:00.37 Elapsed: 00:00:00.45
# Mc/sec: 703.94
//
Query:       MMETSP1137-20121227|8606_1  [L=1382]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0018   15.5   0.2      0.006   13.8   0.0    1.9  2  TIGR03596 GTPase_YlqF: ribosome biogenesis GTP-binding protein YlqF
      0.003   14.4   0.1      0.069    9.9   0.0    2.8  3  TIGR03594 GTPase_EngA: ribosome-associated GTPase EngA


Domain annotation for each model (and alignments):
>> TIGR03596  GTPase_YlqF: ribosome biogenesis GTP-binding protein YlqF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.0   2.9e-06     0.006     103     141 ..     362     400 ..     335     407 .. 0.82
   2 ?   -3.5   0.1      0.57   1.2e+03     200     259 ..    1113    1173 ..    1092    1183 .. 0.53

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 2.9e-06
   TIGR03596 103 kekkeklkakglkkkairalvvGiPNvGKStliNrlakk 141
                  e + +l+a+  ++++ ++lvvG+  vGKSt++N+ ++k
  MMETSP1137-20121227|8606_1 362 VESTLRLEAHSTAQSPHKVLVVGVEGVGKSTFVNSAIRK 400
                 45556678899999********************98877 PP

  == domain 2    score: -3.5 bits;  conditional E-value: 0.57
   TIGR03596  200 keevalfllellkekypeelkerykleeeee..eeeelleeiakkrglllkggeldleraae 259 
                   ++va +l e+++ +  ++l++    e e+   +  +l+ ++ +k+++ ++ ++ld  +++e
  MMETSP1137-20121227|8606_1 1113 ASDVARELQEYVRFNILQALADALLDEIEKIalSMRALIIALVEKQDM-QELERLDAFKISE 1173
                  555555555555555555555543322222233555555555555544.4445555555555 PP

>> TIGR03594  GTPase_EngA: ribosome-associated GTPase EngA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.9   0.0   3.4e-05     0.069     147     196 ..     350     398 ..     339     402 .. 0.69
   2 ?    0.0   0.0     0.035        72      46     121 ..     624     698 ..     617     710 .. 0.80
   3 ?   -1.1   0.0     0.074   1.5e+02     120     170 ..    1032    1082 ..    1026    1103 .. 0.81

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 3.4e-05
   TIGR03594 147 rgikdLldeileelpeeeeeeeeeeeeepikiaiiGrpNvGKStLvNall 196
                 +++++Ll++ ++  ++ +  e++++ ++p k+ ++G   vGKSt+vN+ +
  MMETSP1137-20121227|8606_1 350 EQMERLLTSTISVESTLRL-EAHSTAQSPHKVLVVGVEGVGKSTFVNSAI 398
                 5556666655543333333.3334456899*****************876 PP

  == domain 2    score: 0.0 bits;  conditional E-value: 0.035
   TIGR03594  46 kgkefiliDTgGl.eeeedelekeireqaelaieeadvilfvvdareglteeDeeiaklLrkskkpvilvvNKvdnk 121
                 + ++++++D +G+  e  +++ ++i +++    e + +++ +  +  + +++++  ak+Lr ++    l+ NK+++k
  MMETSP1137-20121227|8606_1 624 ERHRLTIVDVPGFgAEGVNSFRESIVKEVVSNCECSTLLICLAPK--RFDTNNYPTAKILRDTRVFEQLLGNKLNRK 698
                 67899********7777788*********9999999988877654..468888899999998887777777777665 PP

  == domain 3    score: -1.1 bits;  conditional E-value: 0.074
   TIGR03594  120 nkkeeaeaaefyslGlgevlaiSaehgrgikdLldeileelpeeeeeeeee 170 
                  n ++e++++++ +l ++e+++   e g+ ++ L++ +l++lp++++e  +e
  MMETSP1137-20121227|8606_1 1032 NSNNEENLKKLLALVVHELCKRCDEAGSKCNILYEDLLKKLPDQKNEIMKE 1082
                  4577888999999****************************9998865554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1382 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       258  (0.0628961); expected 82.0 (0.02)
Passed bias filter:                       96  (0.0234032); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.85u 0.16s 00:00:01.01 Elapsed: 00:00:00.63
# Mc/sec: 2895.38
//
Query:       MMETSP1137-20121227|8607_1  [L=321]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.3e-40  134.8  14.0    7.3e-40  134.8   9.7    1.8  2  TIGR02977 phageshock_pspA: phage shock protein A
     0.0084   13.1   3.6       0.43    7.5   0.1    2.2  2  TIGR00996 Mtu_fam_mce: virulence factor Mce family protein


Domain annotation for each model (and alignments):
>> TIGR02977  phageshock_pspA: phage shock protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  134.8   9.7   3.5e-43   7.3e-40       2     216 ..      71     296 ..      70     299 .. 0.92
   2 ?   -0.7   0.0       0.1   2.1e+02     199     218 ..     296     315 ..     295     316 .. 0.82

  Alignments for each domain:
  == domain 1    score: 134.8 bits;  conditional E-value: 3.5e-43
   TIGR02977   2 giFsRlaDivnsnlnalldkaedPeKliRliiqEmEdtlvevrsasartlAekkeleRkverlekqeeeWqekAelAlskgreDLAraALiekkkaaekvealekelaaveealekleediekLeekleeararqkalvlRekaAesrlkvreqldsekveealarfeqlerrvdeleaeaeayd.l..........gkkksledefaeLeaedeiekelaalkek 216
                  +  R+  +v sn+ + l+  edPeK++   + +m   lv+vr a a + A  k++e + + +e+++++W ++A+lA++kg +DLAr+AL+ ++++ e ve+l ++++a + +l  l + +++Le+k++ear+++  +++R+++A++ +kv + l+   +   +a fe+++++vd+leaea+  + l          g   sl+ +f++Le+ +++++el+++k+ 
  MMETSP1137-20121227|8607_1  71 NLGDRFVRLVKSNVASALNSLEDPEKVLAQAVDDMQRDLVKVRQAYAEVSASSKRMEEQRRLAENEAAKWYSRAQLAIEKGEDDLAREALTRRQQQVELVESLGAQVEAQSGSLTTLYDSMKELEAKMAEARNKKDQIIARARTAKAATKVNDMLAGVGSGSSMAAFERMSEKVDQLEAEADVSRtLaqsspkalggGGGGSLDARFKALESGSSVDDELKSMKAA 296
                 56679999******************************************************************************************************************************************************************************8653222222222112234899********************86 PP

  == domain 2    score: -0.7 bits;  conditional E-value: 0.1
   TIGR02977 199 eLeaedeiekelaalkeklk 218
                 +L  ++++++el+++k+ + 
  MMETSP1137-20121227|8607_1 296 ALPGSKAVNDELEEMKKLMG 315
                 5777889*********9875 PP

>> TIGR00996  Mtu_fam_mce: virulence factor Mce family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.5   0.1   0.00021      0.43     237     290 ..      64     117 ..      48     118 .. 0.89
   2 !    6.3   0.4   0.00051         1     179     252 ..     155     227 ..     148     233 .. 0.79

  Alignments for each domain:
  == domain 1    score: 7.5 bits;  conditional E-value: 0.00021
   TIGR00996 237 aalsalsaqvrdllaenrpnLaqalanLasvltllvdyspeleqlLkllptaaa 290
                 + ++++ +  +++++  ++n+a al++L+++ ++l+++ +++++ L+ + +a+a
  MMETSP1137-20121227|8607_1  64 SPAGPTMNLGDRFVRLVKSNVASALNSLEDPEKVLAQAVDDMQRDLVKVRQAYA 117
                 567888999999**********************************99988876 PP

  == domain 2    score: 6.3 bits;  conditional E-value: 0.00051
   TIGR00996 179 ltaalnerdedigelidnlnrvldvladasdqldrlldnlatliaqladrsdaLddalaalsalsaqvrdllae 252
                 l++++ +r+++  el+++l++ +++++ +  +l + +++l++ +a  ++++d++ +  a++++++++v+d+la 
  MMETSP1137-20121227|8607_1 155 LAREALTRRQQQVELVESLGAQVEAQSGSLTTLYDSMKELEAKMAEARNKKDQIIA-RARTAKAATKVNDMLAG 227
                 67788889999999999999999999888888888888888888888888888865.45667778889998886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (321 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       365  (0.088981); expected 82.0 (0.02)
Passed bias filter:                      143  (0.034861); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.30u 0.18s 00:00:00.48 Elapsed: 00:00:00.44
# Mc/sec: 962.92
//
Query:       MMETSP1137-20121227|8608_1  [L=133]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      4e-06   25.0  12.8    0.00022   19.4   8.9    2.1  1  TIGR03685 L21P_arch: 50S ribosomal protein L12P
  ------ inclusion threshold ------
       0.16   10.2   9.5      0.039   12.1   3.5    2.1  2  TIGR02811 formate_TAT: formate dehydrogenase region TAT target


Domain annotation for each model (and alignments):
>> TIGR03685  L21P_arch: 50S ribosomal protein L12P
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   8.9   1.1e-07   0.00022      16      95 ..      32     126 ..      16     130 .. 0.63

  Alignments for each domain:
  == domain 1    score: 19.4 bits;  conditional E-value: 1.1e-07
   TIGR03685  16 eineenlkkvleaaGvevdearvKalvaaLedvdieeaiek..aaaap.............vaaaaaaaaaaeaaeeekeeeeeeeeekeeeeee 95 
                 + +e ++ +vl+ +G evd  ++  l+++Le+ di e+++   a +a+             vaaa++aaaa +  +  ++++++ e e eeeeee
  MMETSP1137-20121227|8608_1  32 SPSESDIAAVLSSVGGEVDSEKLPKLLSSLEGKDIVEVLAAgrAKMATmpaggggggggvaVAAAGGAAAAPAGGAAPAAAAKAPEPEPEEEEEE 126
                 347999********************************9752233333668********874444444333333333333333333333333332 PP

>> TIGR02811  formate_TAT: formate dehydrogenase region TAT target
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.1      0.19   3.8e+02      25      37 ..       9      21 ..       3      33 .. 0.73
   2 ?   12.1   3.5   1.9e-05     0.039      17      49 ..      90     123 ..      89     129 .. 0.75

  Alignments for each domain:
  == domain 1    score: -0.6 bits;  conditional E-value: 0.19
   TIGR02811 25 gavaaatgrvasa 37
                 avaa+t + ++a
  MMETSP1137-20121227|8608_1  9 TAVAAGTMKHVAA 21
                4666766665544 PP

  == domain 2    score: 12.1 bits;  conditional E-value: 1.9e-05
   TIGR02811  17 glavgaaagavaaatgrvasasaaaeps.epekk 49 
                 g+av+aa+ga+aa  g +a a+aa++p+ epe++
  MMETSP1137-20121227|8608_1  90 GVAVAAAGGAAAAPAGGAAPAAAAKAPEpEPEEE 123
                 79***************99777766665133443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (133 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       124  (0.0302292); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.18u 0.17s 00:00:00.35 Elapsed: 00:00:00.33
# Mc/sec: 531.96
//
Query:       MMETSP1137-20121227|8610_1  [L=218]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        5.1    2.1  11.1        5.9    1.9   7.7    1.0  1  TIGR03839 termin_org_P1: adhesin P1
          6    2.8   9.4        6.5    2.7   6.5    1.0  1  TIGR00934 2a38euk: potassium uptake protein, Trk family


Domain annotation for each model (and alignments):
>> TIGR03839  termin_org_P1: adhesin P1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   7.7    0.0029       5.9     183     297 ..     104     213 ..      94     218 .] 0.47

  Alignments for each domain:
  == domain 1    score: 1.9 bits;  conditional E-value: 0.0029
   TIGR03839 183 LLvPkaaveyeqlqrglqkqkteskatessfgatfrlkvksavadaaksgekl.aeatassassGsassaarggasadtkakalkvevekgsdsesntqlqkndlaeapikrkees 297
                 L + ++ v+ e ++ + +k++++ +a +++f+      v++a ++aa+  ++   +a a    sGs+ s++ g  s+  + k  k + +k+s+ +++++  k d  +   ++k++s
  MMETSP1137-20121227|8610_1 104 LAINETLVQ-ESVRVRREKEELQRQAADAAFT--NTAAVNAARSEAAEAHKRRrGDADA---QSGSGCSSDSGSDSSSGARKKSKKKYHKESKRDKESKKSKKDKKDGKKHKKHKS 213
                 344444454.5555555566666666666663..3334444444444443333233333...444444444455444444444455556666666666666655544433333333 PP

>> TIGR00934  2a38euk: potassium uptake protein, Trk family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   6.5    0.0032       6.5     238     411 ..     115     210 ..      74     218 .] 0.44

  Alignments for each domain:
  == domain 1    score: 2.7 bits;  conditional E-value: 0.0032
   TIGR00934 238 trvpsekfakrresrdidpedlyrsimmlqekheatakirdkiseanslaaesdeessesrriqekikrrlstssieknsqqnltrlaktksfddskavrlersktidraeasdleeldrakdfqkmveknvkaakrkkknfkkreanlklfeksryakksdrneedngn..kkda 411
                  rv  ek + +r++ d  +++    ++   e  ea+++ r   + +  + ++sd+ s +s   ++k k+                                                                                k  ++s+ +k+s+++++d+++  k+++
  MMETSP1137-20121227|8610_1 115 VRVRREKEELQRQAADAAFTNTAAVNAARSEAAEAHKRRRGDADAQSGSGCSSDSGSDSSSGARKKSKK--------------------------------------------------------------------------------KYHKESKRDKESKKSKKDKKDgkKHKK 210
                 333334444444444444444444444444444444444444333333333333333222223333222................................................................................222333333333222222222111111 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (218 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       240  (0.058508); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.24u 0.12s 00:00:00.36 Elapsed: 00:00:00.36
# Mc/sec: 799.27
//
Query:       MMETSP1137-20121227|8611_1  [L=138]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (138 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        40  (0.00975134); expected 82.0 (0.02)
Passed bias filter:                       35  (0.00853242); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.11s 00:00:00.26 Elapsed: 00:00:00.27
# Mc/sec: 674.61
//
Query:       MMETSP1137-20121227|8612_1  [L=207]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.018   11.6   0.0      0.025   11.1   0.0    1.1  1  TIGR00200 cinA_nterm: competence/damage-inducible protein CinA N-terminal domain


Domain annotation for each model (and alignments):
>> TIGR00200  cinA_nterm: competence/damage-inducible protein CinA N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   6.1e-06     0.025     120     176 ..     100     155 ..      97     164 .. 0.84

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 6.1e-06
   TIGR00200 120 llpagaellanavGtApGmlaeqesrllmlflPGvPselrvmvenealPlLrekfss 176
                 l+ a   l+  + G+  G + e+ + l +l  PG P+e+r+     al +L++k+ s
  MMETSP1137-20121227|8612_1 100 LVHAFKGLVDKSKGVDGG-IEEHADLLSVLAKPGLPAEMRQQTALAALRKLKSKGFS 155
                 555666677888899999.999999999***************99999999999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (207 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       124  (0.0302292); expected 82.0 (0.02)
Passed bias filter:                      115  (0.0280351); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.23u 0.16s 00:00:00.39 Elapsed: 00:00:00.47
# Mc/sec: 581.31
//
Query:       MMETSP1137-20121227|8613_1  [L=44]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (44 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        97  (0.023647); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.25
# Mc/sec: 232.30
//
Query:       MMETSP1137-20121227|8614_1  [L=133]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (133 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        50  (0.0121892); expected 82.0 (0.02)
Passed bias filter:                       44  (0.0107265); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.17s 00:00:00.34 Elapsed: 00:00:01.09
# Mc/sec: 161.05
//
Query:       MMETSP1137-20121227|8615_1  [L=259]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      3e-11   41.2   0.0    4.5e-11   40.7   0.0    1.2  1  TIGR01068 thioredoxin: thioredoxin
    8.5e-11   39.9   0.1    1.3e-10   39.4   0.1    1.3  1  TIGR01126 pdi_dom: protein disulfide-isomerase domain
      7e-07   26.9   0.1    9.3e-07   26.5   0.1    1.1  1  TIGR01130 ER_PDI_fam: protein disulfide isomerases
  ------ inclusion threshold ------
      0.024   12.0   0.0      0.036   11.5   0.0    1.2  1  TIGR00385 dsbE: periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily


Domain annotation for each model (and alignments):
>> TIGR01068  thioredoxin: thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.7   0.0   4.4e-14   4.5e-11       9      95 ..     155     242 ..     149     248 .. 0.87

  Alignments for each domain:
  == domain 1    score: 40.7 bits;  conditional E-value: 4.4e-14
   TIGR01068   9 tvassdklvlvDfwAeWCgpCkmlaPvleelakeleekvkvvKlnvdeeqeiaakygirsiPtlllfkngkevk.rvvGakpkaalke 95 
                 +  +s+k+v++ f+ + C +Ck++ P  e lak++++ ++++ +n  e ++  ++ +++ +P + ++ +g+ ++ + +G+++   ++e
  MMETSP1137-20121227|8615_1 155 AHDDSEKPVVIKFFSPRCISCKAVKPKYERLAKNMQDVAHFYEVNHVEARTFCQQSDVKFMPAVHVYAKGELARaMPMGVQSFPDFNE 242
                 5567899***************************************************************976514578777666655 PP

>> TIGR01126  pdi_dom: protein disulfide-isomerase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.4   0.1   1.2e-13   1.3e-10       9     102 ..     155     245 ..     148     248 .. 0.85

  Alignments for each domain:
  == domain 1    score: 39.4 bits;  conditional E-value: 1.2e-13
   TIGR01126   9 lvldenkdvlvefyaPWCGhCkklaPeyeklakelkkeeekvkiakvdataekelaskfkvsgfPtlkffkkgkkepvdyeGeReaeelvefve 102
                 +  d++k v+++f++P C  Ck++ P+ye+lak++++     +  +v+  + ++ +++ +v+  P ++++ kg+ ++    G  +  ++ ef+ 
  MMETSP1137-20121227|8615_1 155 AHDDSEKPVVIKFFSPRCISCKAVKPKYERLAKNMQDVA---HFYEVNHVEARTFCQQSDVKFMPAVHVYAKGELARAMPMGVQSFPDFNEFLM 245
                 55678999***************************9865...5667777777899999***************998888888888888888876 PP

>> TIGR01130  ER_PDI_fam: protein disulfide isomerases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.5   0.1   9.1e-10   9.3e-07      18      86 ..     160     225 ..     153     246 .. 0.83

  Alignments for each domain:
  == domain 1    score: 26.5 bits;  conditional E-value: 9.1e-10
   TIGR01130  18 nelvLveFYAPWCGHCksLaPeYekAAeelkkkspkvklakvDateekelaqkygvsGyPtLkifrnge 86 
                 ++ v+++F+ P C  Ck+++P+Ye+ A+++++ +   +  +v   e ++ +q+ +v+  P++ ++ +ge
  MMETSP1137-20121227|8615_1 160 EKPVVIKFFSPRCISCKAVKPKYERLAKNMQDVA---HFYEVNHVEARTFCQQSDVKFMPAVHVYAKGE 225
                 5668889999999999999999999999988887...88888888888999999999999999888887 PP

>> TIGR00385  dsbE: periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   3.5e-05     0.036      61     145 ..     158     246 ..     134     254 .. 0.78

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 3.5e-05
   TIGR00385  61 kkgklvLlnvwasWCptCraehplLkelakeglrivgvdykDesqkalkfLkelGnPyq.lvlaDekGkl..aldlGvygaPe..tflvd 145
                    k+v++ +++  C  C+a  p  ++lak+ ++ v+  y  ++ +a  f ++    +  +v    kG+l  a+ +Gv++ P+   fl++
  MMETSP1137-20121227|8615_1 158 DSEKPVVIKFFSPRCISCKAVKPKYERLAKN-MQDVAHFYEVNHVEARTFCQQSDVKFMpAVHVYAKGELarAMPMGVQSFPDfnEFLME 246
                 45689**************************.9999999999999999999988877763666778888733478899988863256665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (259 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       130  (0.0316919); expected 82.0 (0.02)
Passed bias filter:                      125  (0.0304729); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.24u 0.15s 00:00:00.39 Elapsed: 00:00:00.35
# Mc/sec: 976.72
//
Query:       MMETSP1137-20121227|8616_1  [L=244]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (244 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       146  (0.0355924); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.18s 00:00:00.40 Elapsed: 00:00:00.42
# Mc/sec: 766.79
//
Query:       MMETSP1137-20121227|8617_1  [L=376]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (376 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       195  (0.0475378); expected 82.0 (0.02)
Passed bias filter:                      134  (0.032667); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.16s 00:00:00.47 Elapsed: 00:00:00.46
# Mc/sec: 1078.87
//
Query:       MMETSP1137-20121227|8618_1  [L=174]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.013   12.4   0.7      0.014   12.2   0.5    1.0  1  TIGR03362 VI_chp_7: type VI secretion-associated protein, VC_A0119 family


Domain annotation for each model (and alignments):
>> TIGR03362  VI_chp_7: type VI secretion-associated protein, VC_A0119 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.5   3.5e-06     0.014     121     205 ..      43     123 ..      16     139 .. 0.75

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 3.5e-06
   TIGR03362 121 daletaieasvsaadlaeleealaalaqlaeewledaadklpslaklvealkarlteakneaapaaapaapasakapassasasa 205
                  +l+t+  +s+ aa++ ++++  +  a +++ + e+ + +++sl++l++a+++++   ++++++++ + ++a++++p + +s  +
  MMETSP1137-20121227|8618_1  43 VTLRTVLISSCGAACSLAAATSCS--ASSLDTEAENSSHRTGSLSELTQAIREMY--SQKSPSTESNAPEQAESEQPEAVESIVT 123
                 567777777787777655555554..445555555555678**************..8888888888888999998888777663 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (174 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       111  (0.02706); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.18u 0.15s 00:00:00.32 Elapsed: 00:00:00.62
# Mc/sec: 370.42
//
Query:       MMETSP1137-20121227|8619_1  [L=962]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.1e-05   20.6   5.3         15    3.8   0.0    7.6  8  TIGR00756 PPR: pentatricopeptide repeat domain


Domain annotation for each model (and alignments):
>> TIGR00756  PPR: pentatricopeptide repeat domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    3.7   0.0     0.004        16      10      25 ..      82      97 ..      80     107 .. 0.85
   2 ?   -1.9   0.0      0.25     1e+03      13      23 ..     131     141 ..     130     145 .. 0.87
   3 ?    2.3   0.0     0.012        47       7      23 ..     151     167 ..     149     173 .. 0.86
   4 ?   -2.2   0.0      0.32   1.3e+03      16      24 ..     205     213 ..     198     224 .. 0.49
   5 ?   -1.4   0.0      0.17   7.1e+02      11      23 ..     313     325 ..     312     329 .. 0.87
   6 ?    1.2   0.0     0.027   1.1e+02      11      27 ..     371     387 ..     369     390 .. 0.85
   7 ?    2.5   0.0      0.01        42       7      22 ..     514     529 ..     513     530 .. 0.90
   8 !    3.8   0.0    0.0037        15       7      22 ..     568     583 ..     568     586 .. 0.89

  Alignments for each domain:
  == domain 1    score: 3.7 bits;  conditional E-value: 0.004
   TIGR00756 10 lckagrveeAlelfde 25
                + +ag++ +A+e++ +
  MMETSP1137-20121227|8619_1 82 YLRAGQPQDAVEMYAR 97
                8999999999999976 PP

  == domain 2    score: -1.9 bits;  conditional E-value: 0.25
   TIGR00756  13 agrveeAlelf 23 
                 +g+++eA++l+
  MMETSP1137-20121227|8619_1 131 SGKYKEAERLY 141
                 699******99 PP

  == domain 3    score: 2.3 bits;  conditional E-value: 0.012
   TIGR00756   7 isglckagrveeAlelf 23 
                 i+ + ka+r+e++++l 
  MMETSP1137-20121227|8619_1 151 INMYKKARRYEDMIRLV 167
                 899***********997 PP

  == domain 4    score: -2.2 bits;  conditional E-value: 0.32
   TIGR00756  16 veeAlelfd 24 
                 +  A+ +++
  MMETSP1137-20121227|8619_1 205 WGSAVNMYR 213
                 444444443 PP

  == domain 5    score: -1.4 bits;  conditional E-value: 0.17
   TIGR00756  11 ckagrveeAlelf 23 
                  ka +++eA++++
  MMETSP1137-20121227|8619_1 313 IKADKPKEAIDMY 325
                 6999********9 PP

  == domain 6    score: 1.2 bits;  conditional E-value: 0.027
   TIGR00756  11 ckagrveeAlelfdeMk 27 
                  +a+++e A++++++ +
  MMETSP1137-20121227|8619_1 371 IRAKKPELAVKMYKDAL 387
                 699**********9865 PP

  == domain 7    score: 2.5 bits;  conditional E-value: 0.01
   TIGR00756   7 isglckagrveeAlel 22 
                 i+ ++  g++++A+ l
  MMETSP1137-20121227|8619_1 514 IDVYVAGGMWDKAKAL 529
                 899**********875 PP

  == domain 8    score: 3.8 bits;  conditional E-value: 0.0037
   TIGR00756   7 isglckagrveeAlel 22 
                 i +++++g++e +l+l
  MMETSP1137-20121227|8619_1 568 IEAYAQQGDWERCLQL 583
                 789**********997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (962 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       178  (0.0433935); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.14s 00:00:00.69 Elapsed: 00:00:00.69
# Mc/sec: 1840.20
//
Query:       MMETSP1137-20121227|8621_1  [L=518]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (518 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       103  (0.0251097); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.13s 00:00:00.48 Elapsed: 00:00:00.42
# Mc/sec: 1627.87
//
Query:       MMETSP1137-20121227|8622_1  [L=603]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (603 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        66  (0.0160897); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.15s 00:00:00.54 Elapsed: 00:00:00.37
# Mc/sec: 2151.07
//
Query:       MMETSP1137-20121227|8623_1  [L=442]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (442 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        77  (0.0187713); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.16s 00:00:00.47 Elapsed: 00:00:00.48
# Mc/sec: 1215.40
//
Query:       MMETSP1137-20121227|8624_1  [L=521]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (521 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       109  (0.0265724); expected 82.0 (0.02)
Passed bias filter:                      104  (0.0253535); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.15s 00:00:00.52 Elapsed: 00:00:00.50
# Mc/sec: 1375.33
//
Query:       MMETSP1137-20121227|8625_1  [L=228]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (228 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        49  (0.0119454); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.12s 00:00:00.32 Elapsed: 00:00:00.36
# Mc/sec: 835.93
//
Query:       MMETSP1137-20121227|8627_1  [L=243]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (243 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       201  (0.0490005); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.14s 00:00:00.35 Elapsed: 00:00:00.48
# Mc/sec: 668.19
//
Query:       MMETSP1137-20121227|8628_1  [L=198]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.1e-25   86.1   0.0    4.3e-25   85.7   0.0    1.2  1  TIGR01068 thioredoxin: thioredoxin
    1.4e-14   52.1   0.3    2.6e-14   51.3   0.0    1.6  2  TIGR01126 pdi_dom: protein disulfide-isomerase domain
    1.5e-12   45.6   0.0    1.9e-12   45.3   0.0    1.1  1  TIGR01130 ER_PDI_fam: protein disulfide isomerases
    1.1e-05   22.9   0.0     0.0048   14.3   0.0    2.2  2  TIGR00385 dsbE: periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily
     0.0019   16.5   0.1       0.01   14.2   0.0    2.1  2  TIGR02196 GlrX_YruB: glutaredoxin-like protein, YruB-family
     0.0031   15.4   0.0     0.0074   14.2   0.0    1.6  1  TIGR00411 redox_disulf_1: redox-active disulfide protein 1
  ------ inclusion threshold ------
      0.017   12.6   0.0      0.024   12.2   0.0    1.3  1  TIGR02738 TrbB: type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB


Domain annotation for each model (and alignments):
>> TIGR01068  thioredoxin: thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.7   0.0   7.4e-28   4.3e-25       3      97 ..     102     194 ..     100     198 .] 0.93

  Alignments for each domain:
  == domain 1    score: 85.7 bits;  conditional E-value: 7.4e-28
   TIGR01068   3 eenfeetvassdklvlvDfwAeWCgpCkmlaPvleelakeleekvkvvKlnvdeeqeiaakygirsiPtlllfkngkevkrvvGakpkaalkeli 97 
                 +e++ee +a++d+l++vDf A+WCgpC+ +aPv+  la+e+  +v +vK++vde  e+aa+ g++s+Pt  + +ng+  + v Ga + a+l+ ++
  MMETSP1137-20121227|8628_1 102 AEEWEELLARADTLIVVDFTASWCGPCQRIAPVFTALADEYP-DVVFVKIDVDELGELAADLGVSSMPTFQMWRNGEMLDVVRGADE-AKLRAAV 194
                 6899**********************************9999.6****************************************976.7777666 PP

>> TIGR01126  pdi_dom: protein disulfide-isomerase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.2       2.1   1.2e+03      24      35 ..       4      15 ..       2      45 .. 0.69
   2 !   51.3   0.0   4.4e-17   2.6e-14       4      83 ..     103     178 ..     100     196 .. 0.89

  Alignments for each domain:
  == domain 1    score: -2.3 bits;  conditional E-value: 2.1
   TIGR01126 24 PWCGhCkklaPe 35
                P C h  + aP 
  MMETSP1137-20121227|8628_1  4 PHCNHSARCAPA 15
                677777666663 PP

  == domain 2    score: 51.3 bits;  conditional E-value: 4.4e-17
   TIGR01126   4 enfdelvldenkdvlvefyaPWCGhCkklaPeyeklakelkkeeekvkiakvdataekelaskfkvsgfPtlkffkkgkk 83 
                 e+ +el++ ++  ++v+f+a WCG C+++aP++  la+e+     +v+  k+d ++  ela++++vs+ Pt +++++g+ 
  MMETSP1137-20121227|8628_1 103 EEWEELLARADTLIVVDFTASWCGPCQRIAPVFTALADEYP----DVVFVKIDVDELGELAADLGVSSMPTFQMWRNGEM 178
                 5678889999999**************************98....599*****************************985 PP

>> TIGR01130  ER_PDI_fam: protein disulfide isomerases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.3   0.0   3.3e-15   1.9e-12       8      87 ..     102     178 ..      95     190 .. 0.85

  Alignments for each domain:
  == domain 1    score: 45.3 bits;  conditional E-value: 3.3e-15
   TIGR01130   8 kenfddlikene.lvLveFYAPWCGHCksLaPeYekAAeelkkkspkvklakvDateekelaqkygvsGyPtLkifrnges 87 
                 +e++++l+ + + l++v F A WCG C+++aP + +    l+++ p+v+ +k+D  e  ela   gvs  Pt +++rnge 
  MMETSP1137-20121227|8628_1 102 AEEWEELLARADtLIVVDFTASWCGPCQRIAPVFTA----LADEYPDVVFVKIDVDELGELAADLGVSSMPTFQMWRNGEM 178
                 468999998776156789***************965....7778999********************************85 PP

>> TIGR00385  dsbE: periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.0   8.2e-06    0.0048      61      93 ..     111     143 ..      93     152 .. 0.78
   2 !    7.0   0.0    0.0015      0.89     120     150 ..     149     178 ..     144     190 .. 0.82

  Alignments for each domain:
  == domain 1    score: 14.3 bits;  conditional E-value: 8.2e-06
   TIGR00385  61 kkgklvLlnvwasWCptCraehplLkelakegl 93 
                 +   l+++++ asWC++C+   p+ + la e  
  MMETSP1137-20121227|8628_1 111 RADTLIVVDFTASWCGPCQRIAPVFTALADEYP 143
                 445678899*******************98854 PP

  == domain 2    score: 7.0 bits;  conditional E-value: 0.0015
   TIGR00385 120 lvlaDekGklaldlGvygaPetflvdgnGvi 150
                  +  De G+la dlGv ++P tf +  nG +
  MMETSP1137-20121227|8628_1 149 KIDVDELGELAADLGVSSMP-TFQMWRNGEM 178
                 56789**************9.7888888866 PP

>> TIGR02196  GlrX_YruB: glutaredoxin-like protein, YruB-family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.1      0.65   3.8e+02       8      19 ..      16      27 ..      14      32 .. 0.79
   2 !   14.2   0.0   1.8e-05      0.01       5      56 ..     120     172 ..     116     195 .. 0.77

  Alignments for each domain:
  == domain 1    score: -0.5 bits;  conditional E-value: 0.65
   TIGR02196  8 pwCppCkkakey 19
                p+C +C  a+++
  MMETSP1137-20121227|8628_1 16 PSCNDCYDARAA 27
                79****999876 PP

  == domain 2    score: 14.2 bits;  conditional E-value: 1.8e-05
   TIGR02196   5 YttpwCppCkkakeyLkskgiafeei.dvekdsaaaeellkklgqrsvPvivi 56 
                 +t  wC+pC+++   +++   ++ ++  v+ d  +  el  +lg  s P+ ++
  MMETSP1137-20121227|8628_1 120 FTASWCGPCQRIAPVFTALADEYPDVvFVKIDVDELGELAADLGVSSMPTFQM 172
                 7999*******************88626999999***************9874 PP

>> TIGR00411  redox_disulf_1: redox-active disulfide protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.0   1.3e-05    0.0074       6      62 ..     120     177 ..     116     196 .. 0.81

  Alignments for each domain:
  == domain 1    score: 14.2 bits;  conditional E-value: 1.3e-05
   TIGR00411   6 ftsPtCPyCPkakkvveevakeegdkvevekinvmedlkkaleyGimavPaivi..ngk 62 
                 ft+  C  C +   v    a+e +d v v ki+v+e  + a + G+ ++P+  +  ng+
  MMETSP1137-20121227|8628_1 120 FTASWCGPCQRIAPVFTALADEYPDVVFV-KIDVDELGELAADLGVSSMPTFQMwrNGE 177
                 9999*********************9876.8*******************987633444 PP

>> TIGR02738  TrbB: type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   4.1e-05     0.024      47      82 ..     110     145 ..      60     173 .. 0.78

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 4.1e-05
   TIGR02738  47 vlledyklvlfyqstCpyChqfapvLkqlsqqtgle 82 
                 + +++  +v f  s C  C++ apv+++l++++   
  MMETSP1137-20121227|8628_1 110 ARADTLIVVDFTASWCGPCQRIAPVFTALADEYPDV 145
                 5566777889********************998543 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (198 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       127  (0.0309605); expected 82.0 (0.02)
Passed bias filter:                      113  (0.0275475); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.20u 0.14s 00:00:00.34 Elapsed: 00:00:00.35
# Mc/sec: 746.68
//
Query:       MMETSP1137-20121227|8629_1  [L=1163]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
          0 1341.6   0.0          0 1341.3   0.0    1.0  1  TIGR01408 Ube1: ubiquitin-activating enzyme E1
    1.7e-41  139.6   0.0      4e-23   79.7   0.0    2.3  2  TIGR02356 adenyl_thiF: thiazole biosynthesis adenylyltransferase ThiF
    6.3e-28   95.6   0.0    4.6e-16   56.8   0.0    2.2  2  TIGR02355 moeB: molybdopterin synthase sulfurylase MoeB
    1.7e-13   48.7   0.0    6.3e-07   27.3   0.0    2.7  3  TIGR02354 thiF_fam2: thiamine biosynthesis protein ThiF
    1.8e-10   38.4   0.0    3.8e-08   30.8   0.0    2.3  2  TIGR03736 PRTRC_ThiF: PRTRC system ThiF family protein
    2.5e-06   24.0   0.0       0.01   12.1   0.0    2.1  2  TIGR01381 E1_like_apg7: E1-like protein-activating enzyme Gsa7p/Apg7p


Domain annotation for each model (and alignments):
>> TIGR01408  Ube1: ubiquitin-activating enzyme E1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ! 1341.3   0.0         0         0       2    1002 ..      65    1069 ..      64    1073 .. 0.97

  Alignments for each domain:
  == domain 1    score: 1341.3 bits;  conditional E-value: 0
   TIGR01408    2 idealysrqlyvlGdeamkklaksnvlisGmkGlGveiaknlvlaGvksvtlhdeekvelwdlssnfflseddvgknraeasvkklaelnqyvvvssvskslnkeflkkfqvvvlteislekqleindfcrsqqppiafikadvrGlfgsvfcdfGeefavldtdGeePktgliasitdenqgvvtcleeerheledGdlvkfseveGmtglndgkprkikvksPysfsigevtelgsyvkgGivtqvkvPkkvsfkslrealkdPeflfsdfsklerPpelhlafqaldafkekaerlPragseedaeellklatkiaet.leekveevdeklvkelsytakgvlsplaallGGvvaqevlkavtgkfsPlkqylyldsveslesev..kveseefkPrgsrydaqiavfGaklqkkledlkvflvGaGaiGcellknlallGvatgkkGkitvtdddlieksnlnrqflfrprdigkaksevaasavavinprlkieayqnrvgpetetifddefyeklsvvvnaldnvearlyvdsrclffekPllesGtlGtkgntqvvvPhltesygssrdPPekeiPlctlksfPaaiehtiawardkfegllekkpaevnkylsspsefeesllkiqsaqarevlerivellekekpesfeecvelarlkfekyfnnkvkqllytfPkdaatstGapfwsaPkraPsPlkfdlsepehldfivaaaklyaevygipiaeedkseallevlsevkvpefkPksdkkiqtd....ekaekpetaaieddkaaikdlakkidsneallsdlrlkplefekdddsnyhidfitaasnlraknysiepadrlktkfiaGkiiPaiatstavvsGlvalelvkvvdGkkkveaykntflnlaiplfsfaepleskkvkv..rdkaitkiwdryvlkg..dltlrelidalkkekGleatmvssGvkllyasllp..khaerlklkvselvkdvtkkklepyrkdlvvevacddeddedvevPl 1002
                  idealysrqlyvlG+eam+++a+s vli+G+kGlG+eiakn+vl Gvksvtlhd+ +v l dls++ffl e dvg+ raeasv +laelnqyv+vs  +  l  e+ ++f +vvlt++ l k++ in+ cr+     +fi ad+ Glfg +fcdfG+ f v dt+GeeP  +++as+t+++ g+vt+l+e rh+ledGd+vkf+ev+Gmt+ln+ + r +kv +Py+f+i++++ +g+y +gG v qvk  k+v fksl e+l+ Pefl+sdf+k++rP+ lh  fqal af e+++ lP +  e  a+e+l  a+kia + +   + e+ e+++++ls +a+g l +++a++GG++aqev+ka++gkf P++q+ly+d+ e+l+  +     + e  Prg+rydaq +v+G  +q +l++l+ +lvGaGaiGce+lkn+al+Gv+t+ +G itvtd+d ieksnlnrqflfrp+d+ k+ks +aa a++ +n+ ++++a ++r+gpete+ fdd+f+ekls v naldnv+arlyvd+rc++++kPllesGtlG kgn qvvvP +tesygssrdPPek+iP+ctlk+fP+aiehti+ward feg ++++ ++vn+yls p  f+ +l + q +  + +le i+  l+ +kp s e+cv +arlkfe+ fnn++ ql+++fP d++ts+G+pfws+Pkr+P+Pl f+ ++p+h+dfiv+aa+l+a++yg++ + ++    + + l+ v vpef Pk +++iq+d    eka +pe  +  dd aa ++l+k+++++++l + +rl+++efekdddsn+hidfit+asnlra+ny i++adr +tk iaGkiiPaiat+ta+v+Glv++e++k+++ +kk+e +kn+f+nla+p++sf+ep++++k  +   +k++t +wdr+ ++   +ltl+e+id++k+ + le+tm+ssGv++ly+ + +  k++er++l++selv+ v+k +++p +  ++ e++c+de dedvevP+
  MMETSP1137-20121227|8629_1   65 IDEALYSRQLYVLGHEAMRRMAASTVLIVGLKGLGIEIAKNVVLGGVKSVTLHDPTPVALSDLSAQFFLNEADVGRGRAEASVPRLAELNQYVPVSEYKGELTPEYASQFGIVVLTDTPLAKAIAINEACRRAG--SRFILADTFGLFGGLFCDFGDAFDVHDTTGEEPVSAMVASVTQDEAGLVTVLDESRHNLEDGDFVKFTEVRGMTELNGEHTRPVKVLGPYTFTIEDTRGYGAYERGGYVHQVKRKKTVAFKSLAESLRAPEFLISDFAKFDRPMMLHAGFQALHAFSEAHGTLPAPSDEAHAAEVLASAKKIAAAtAGGEEAELSERVLRNLSSGARGELPAMTAFFGGIAAQEVMKAASGKFMPVMQWLYFDAEEVLPNGGaeMLPTAETGPRGTRYDAQACVLGWSMQTQLASLRYLLVGAGAIGCEMLKNMALMGVGTAADGLITVTDPDTIEKSNLNRQFLFRPWDVSKPKSSTAAAAALGMNAAVHVDARLERLGPETEDTFDDAFWEKLSGVCNALDNVQARLYVDQRCIYYQKPLLESGTLGPKGNVQVVVPRMTESYGSSRDPPEKSIPVCTLKNFPNAIEHTIQWARDLFEGCFKQSAEDVNAYLSQPD-FLAALER-QPGLRKTTLEAIRANLV-DKPISLEQCVVWARLKFEEIFNNNIAQLIFNFPLDMVTSSGTPFWSGPKRPPTPLVFNPDDPLHMDFIVSAANLRAFNYGLKGS-TEI-SFFRRCLDTVMVPEFVPKAGVRIQADpkeeEKAPQPEPSSLGDDDAACEELVKTLPQPSSLAG-YRLNAVEFEKDDDSNFHIDFITSASNLRARNYVITEADRHRTKQIAGKIIPAIATTTAMVTGLVSIEMLKLLQPDKKIEDFKNAFANLALPFLSFSEPIAAPKRPIgnTGKEWT-LWDRFDVDEgrELTLKEFIDYFKERHNLEVTMISSGVSILYSFFTAqkKLKERMPLRMSELVQTVSKTEFKPTQSYITFEICCNDETDEDVEVPY 1069
                  9**********************************************************************************************************************************988..89************************************************************************************************************************************************************************************9874556678*********************************************************9985555688999*********************************************************************************************************************************************************************************************************************************9.7776655.5999*************.9*********************************************************************************93.333.6899********************984432445566777779******************999.****************************************************************************************************99977621456666.*******86699*****************************988766699********************************************7 PP

>> TIGR02356  adenyl_thiF: thiazole biosynthesis adenylyltransferase ThiF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.5   0.0   3.6e-19   2.5e-16       3     150 ..      71     212 ..      69     224 .. 0.92
   2 !   79.7   0.0   5.8e-26     4e-23      11     165 ..     473     636 ..     465     652 .. 0.86

  Alignments for each domain:
  == domain 1    score: 57.5 bits;  conditional E-value: 3.6e-19
   TIGR02356   3 arqlllkeigeegqqklleskvliiGaGgLgsavaeylaaaGvgtiaivDdDevdlsNlqrqilfaeedvkrpKveaaaerlkelnseirvealkeevtaenleelieqvdlvlDctDnfktrylindaceaagkPlisaavvgfeGq 150
                 +rql    +g e  +++++s vli+G+ gLg ++a+ ++  Gv  +++ D   v ls l  q   +e+dv+r ++ea+  rl eln+ + v+ +k e+t+e      +q  +v+ +   ++   +in+ac  ag  +i a   g+ G 
  MMETSP1137-20121227|8629_1  71 SRQL--YVLGHEAMRRMAASTVLIVGLKGLGIEIAKNVVLGGVKSVTLHDPTPVALSDLSAQFFLNEADVGRGRAEASVPRLAELNQYVPVSEYKGELTPEYA----SQFGIVVLTDTPLAKAIAINEACRRAGSRFILADTFGLFGG 212
                 5654..45899****************************************************************************************9876....56788887777899999****************99997665 PP

  == domain 2    score: 79.7 bits;  conditional E-value: 5.8e-26
   TIGR02356  11 igeegqqklleskvliiGaGgLgsavaeylaaaGvgt.....iaivDdDevdlsNlqrqilfaeedvkrpKveaaaerlkelnseirvealkeevtaen...leel.ieqvdlvlDctDnfktrylindaceaagkPlisaavvgfeGqvavldsskgpclrcl 165
                 +g + q +l++ + l++GaG++g+++++ +a +Gvgt     i++ D D+++ sNl+rq lf+  dv +pK+ +aa +   +n  ++v+a  e++ +e      ++  e+   v  + Dn+++r  +++ c  ++kPl+ ++ +g +G+v v+ ++ + ++   
  MMETSP1137-20121227|8629_1 473 LGWSMQTQLASLRYLLVGAGAIGCEMLKNMALMGVGTaadglITVTDPDTIEKSNLNRQFLFRPWDVSKPKSSTAAAAALGMNAAVHVDARLERLGPETedtFDDAfWEKLSGVCNALDNVQARLYVDQRCIYYQKPLLESGTLGPKGNVQVVVPRMTESYGSS 636
                 578899*****************************987777799**************************************************9766411144441577889*****************************************9999888664 PP

>> TIGR02355  moeB: molybdopterin synthase sulfurylase MoeB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.6   0.0     1e-12   6.8e-10       5     100 ..      70     163 ..      66     197 .. 0.89
   2 !   56.8   0.0   6.7e-19   4.6e-16       4     157 ..     465     625 ..     463     633 .. 0.85

  Alignments for each domain:
  == domain 1    score: 36.6 bits;  conditional E-value: 1e-12
   TIGR02355   5 ynrqiilkaldfdGqeklkaskvlivGlGGlGcaasqylaaaGvGrltlvdfdtvelsnlqrqvlhsdanigqpkvesakdaleelnphieietin 100
                 y+rq+ +  l  +   ++ as vlivGl GlG   ++ +   Gv  +tl d   v ls+l  q + ++a++g+ + e++  +l eln ++ ++  +
  MMETSP1137-20121227|8629_1  70 YSRQLYV--LGHEAMRRMAASTVLIVGLKGLGIEIAKNVVLGGVKSVTLHDPTPVALSDLSAQFFLNEADVGRGRAEASVPRLAELNQYVPVSEYK 163
                 6777654..55677888999**********************************************************************997655 PP

  == domain 2    score: 56.8 bits;  conditional E-value: 6.7e-19
   TIGR02355   4 rynrqiilkaldfdGqeklkaskvlivGlGGlGcaasqylaaaGvGr.....ltlvdfdtvelsnlqrqvlhsdanigqpkvesakdaleelnphieietinakl....ddeelaaliakhdvvvdctdnvevrnqlnrqcfaakvplvsgaairleGqvsvf 157
                 ry+ q  +       q +l + + l+vG+G +Gc   + +a  GvG      +t+ d dt+e+snl+rq l +  ++++pk  +a++a   +n  +++++  ++l    +d   +a+ +k + v ++ dnv+ r  ++++c   ++pl+ + ++  +G+v v 
  MMETSP1137-20121227|8629_1 465 RYDAQACVLG--WSMQTQLASLRYLLVGAGAIGCEMLKNMALMGVGTaadglITVTDPDTIEKSNLNRQFLFRPWDVSKPKSSTAAAAALGMNAAVHVDARLERLgpetEDTFDDAFWEKLSGVCNALDNVQARLYVDQRCIYYQKPLLESGTLGPKGNVQVV 625
                 6666666544..4457789999*******************999986444548999*****************************************9998777722214444578999******************************99999999998875 PP

>> TIGR02354  thiF_fam2: thiamine biosynthesis protein ThiF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.3   0.0   9.2e-10   6.3e-07      14     134 ..      80     196 ..      64     213 .. 0.80
   2 !   18.2   0.0   5.6e-07   0.00038      19     129 ..     481     601 ..     474     623 .. 0.79
   3 ?   -2.6   0.0       1.3   8.9e+02      57      83 ..     883     909 ..     877     946 .. 0.70

  Alignments for each domain:
  == domain 1    score: 27.3 bits;  conditional E-value: 9.2e-10
   TIGR02354  14 kvveklkkasvaiaGlGGlGsnvainlaraGigklilvdfdvvepsnlnrqqyk.vsdvGkkktealkeqiseinPyveieiidekideenleklfkdadivieafdnaeakallvnavlek 134
                 + + ++  ++v i+Gl GlG ++a n+   G++ + l d   v  s+l  q +    dvG+ ++ea + ++ e+n yv +  ++ +++ e   ++     iv+   d++ aka+ +n   + 
  MMETSP1137-20121227|8629_1  80 EAMRRMAASTVLIVGLKGLGIEIAKNVVLGGVKSVTLHDPTPVALSDLSAQFFLnEADVGRGRAEASVPRLAELNQYVPVSEYKGELTPEYASQF----GIVV-LTDTPLAKAIAINEACRR 196
                 566778889*****************************************99851579**********************999988887765544....3444.347777777766666555 PP

  == domain 2    score: 18.2 bits;  conditional E-value: 5.6e-07
   TIGR02354  19 lkkasvaiaGlGGlGsnvainlaraGigk.....lilvdfdvvepsnlnrqq.ykvsdvGkkktealkeqiseinPyveieiideki...deenlek.lfkdadivieafdnaeakallvn 129
                 l   +  ++G G +G ++  n+a +G+g      + + d d +e snlnrq  ++  dv k+k+ +       +n  v++++  e++   +e+ +++ + ++   v++a+dn +a+  + +
  MMETSP1137-20121227|8629_1 481 LASLRYLLVGAGAIGCEMLKNMALMGVGTaadglITVTDPDTIEKSNLNRQFlFRPWDVSKPKSSTAAAAALGMNAAVHVDARLERLgpeTEDTFDDaFWEKLSGVCNALDNVQARLYVDQ 601
                 555566789******************864444245679************636789******999999999999999999998887555678887625577899*******999866555 PP

  == domain 3    score: -2.6 bits;  conditional E-value: 1.3
   TIGR02354  57 epsnlnrqqykvsdvGkkktealkeqi 83 
                  +snl+ ++y + +  +++t+ +  +i
  MMETSP1137-20121227|8629_1 883 SASNLRARNYVITEADRHRTKQIAGKI 909
                 578999999999998888888776554 PP

>> TIGR03736  PRTRC_ThiF: PRTRC system ThiF family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.1   0.0     0.004       2.7      47      86 ..     113     153 ..      85     203 .. 0.80
   2 !   30.8   0.0   5.5e-11   3.8e-08      11     179 ..     483     658 ..     476     671 .. 0.71

  Alignments for each domain:
  == domain 1    score: 5.1 bits;  conditional E-value: 0.004
   TIGR03736  47 kvtvlDdDtvseanvgRqafa.padvGankaivlvqRvnql 86 
                 +vt  D+  v+ ++++ q f   advG+ +a++ v R+ +l
  MMETSP1137-20121227|8629_1 113 SVTLHDPTPVALSDLSAQFFLnEADVGRGRAEASVPRLAEL 153
                 6999****************7358************98654 PP

  == domain 2    score: 30.8 bits;  conditional E-value: 5.5e-11
   TIGR03736  11 kvkvvlvGaGGtGsqllegLarlhkalkalGhpaGlkvtvlDdDtvseanvgRq.afapadvGankaivlvq.RvnqllgldWeakperleveealssa.......dlvigavDnrkaRkailealeegssGarywLDlGnrkddg..qvilGevssrk...vgeaklrlPt.vgelfPelida 179
                 +++ +lvGaG  G ++l+++a + +   a G      +tv D+Dt+ ++n+ Rq +f p dv + k+++     + +   ++ +a  erl  e++ +           v  a Dn +aR  +++++   +   + +L+ G+   +g  qv++ +++++    +   ++++P  + + fP+ i++
  MMETSP1137-20121227|8629_1 483 SLRYLLVGAGAIGCEMLKNMALMGVGTAADG-----LITVTDPDTIEKSNLNRQfLFRPWDVSKPKSSTAAAaALGMNAAVHVDARLERLGPETEDTFDdafweklSGVCNALDNVQARLYVDQRCIYYQ---KPLLESGTLGPKGnvQVVVPRMTESYgssRDPPEKSIPVcTLKNFPNAIEH 658
                 56779*************9877766555544.....47****************5699********9876651556666889999999998765554433467755568999**********99987555...456777765444433777777765554322222334664145677777766 PP

>> TIGR01381  E1_like_apg7: E1-like protein-activating enzyme Gsa7p/Apg7p
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.6   0.0   8.3e-05     0.056     329     400 ..      79     147 ..      48     166 .. 0.75
   2 !   12.1   0.0   1.5e-05      0.01     335     402 ..     481     550 ..     476     561 .. 0.80

  Alignments for each domain:
  == domain 1    score: 9.6 bits;  conditional E-value: 8.3e-05
   TIGR01381 329 eldlevlssvkvlllGaGtlGcqvarvllGyGvrhitfvdngkvsfsnPvrqslynfedcleggegkaetaa 400
                 +  + ++  + vl++G   lG ++a+ ++  Gv+ +t+ d + v++s+   q + n  d+  g   +ae+++
  MMETSP1137-20121227|8629_1  79 HEAMRRMAASTVLIVGLKGLGIEIAKNVVLGGVKSVTLHDPTPVALSDLSAQFFLNEADVGRG---RAEASV 147
                 55677889999***************99988******************99999998886444...444443 PP

  == domain 2    score: 12.1 bits;  conditional E-value: 1.5e-05
   TIGR01381 335 lssvkvlllGaGtlGcqvar..vllGyGvrh...itfvdngkvsfsnPvrqslynfedcleggegkaetaaka 402
                 l s++ ll+GaG++Gc++ +  +l+G G      it  d  ++  sn  rq l+   d+ +    k+ taa+a
  MMETSP1137-20121227|8629_1 481 LASLRYLLVGAGAIGCEMLKnmALMGVGTAAdglITVTDPDTIEKSNLNRQFLFRPWDVSKP---KSSTAAAA 550
                 678999***********976337999998744559*******************99998766...44444433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1163 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       113  (0.0275475); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.83u 0.18s 00:00:01.01 Elapsed: 00:00:00.86
# Mc/sec: 1784.92
//
Query:       MMETSP1137-20121227|8630_1  [L=282]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.4e-26   89.7   0.0    6.3e-26   89.2   0.0    1.2  1  TIGR01198 pgl: 6-phosphogluconolactonase
  ------ inclusion threshold ------
      0.015   12.5   0.0          2    5.5   0.0    2.2  2  TIGR00502 nagB: glucosamine-6-phosphate deaminase


Domain annotation for each model (and alignments):
>> TIGR01198  pgl: 6-phosphogluconolactonase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.2   0.0   3.1e-29   6.3e-26       9     230 ..      45     259 ..      41     263 .. 0.86

  Alignments for each domain:
  == domain 1    score: 89.2 bits;  conditional E-value: 3.1e-29
   TIGR01198   9 aealaervatklekalaekgqallalsGGrspialleaLaaqkldWsrihlflgDERivplddadsntkllrealLdrvaipasnihlvptelsedveeaaekyeqelaaakqpe...evpsfDlllLGmGpDgHtaSLFPetpalqetek.lvvvltkspkppheRitltlpvlnaakkvlllvaGeeKaavlaeilkveaeelslpaalvlgsekllwlldeaa 230
                 a+ + e v++++e a++ekg+++la+ GG+ + al   L+ +++d+s++h++++ E i     a+  ++ + +a+   + +p ++ih v +++++   e a++yeq l+ a+  +   ++p+ D++lLG G+DgH   L+Pe+ a++   +  vv+  ++++   + i l+++++  ak+v++ +aG+ +a ++a++l+ + ++ ++pa lv   + ++w++de+ 
  MMETSP1137-20121227|8630_1  45 ASDICEMVTAAAEAAIEEKGSFSLAIPGGSVVRAL-GGLSDDAFDFSKMHVYFVNENI----GANTCYQGALDAFAVAKGVPLEQIHKVGEGAPA---EVAAAYEQVLRDAASIDqsfSLPTVDMMLLGTGEDGHCGMLYPESDAVKASWEgKVVIPIDQGET--QAIALSMDMMCSAKQVIVSAAGAGRAPMVAKALSGKFDDFECPAGLVDSVD-TIWMVDEDS 259
                 56778999**********************99997.68******************87....6888999999999999***************65...566666666666655444459*************************9999877444444444444..79*****************************************98877665.9*****986 PP

>> TIGR00502  nagB: glucosamine-6-phosphate deaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   0.0   0.00097         2     128     152 ..     156     180 ..     132     187 .. 0.86
   2 ?    4.9   0.0    0.0015       3.1     182     241 ..     198     257 ..     188     265 .. 0.78

  Alignments for each domain:
  == domain 1    score: 5.5 bits;  conditional E-value: 0.00097
   TIGR00502 128 lGkidlfllGiGadGhiafnePgss 152
                 l  +d++llG G+dGh ++  P s+
  MMETSP1137-20121227|8630_1 156 LPTVDMMLLGTGEDGHCGMLYPESD 180
                 567899************9999887 PP

  == domain 2    score: 4.9 bits;  conditional E-value: 0.0015
   TIGR00502 182 PkkaltvGiktildskevlllvsGkekaeavkklvegsvnedvtisalqlhkkvivvade 241
                   +a+++ ++ + ++k+v++ ++G  +a  v k++ g+ ++    + l    + i ++de
  MMETSP1137-20121227|8630_1 198 ETQAIALSMDMMCSAKQVIVSAAGAGRAPMVAKALSGKFDDFECPAGLVDSVDTIWMVDE 257
                 568999999**************************9998775544445555555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (282 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       105  (0.0255973); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.26u 0.17s 00:00:00.43 Elapsed: 00:00:00.41
# Mc/sec: 907.83
//
Query:       MMETSP1137-20121227|8631_1  [L=149]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (149 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       212  (0.0516821); expected 82.0 (0.02)
Passed bias filter:                      103  (0.0251097); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.17s 00:00:00.37 Elapsed: 00:00:00.60
# Mc/sec: 327.77
//
Query:       MMETSP1137-20121227|8632_1  [L=525]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (525 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        96  (0.0234032); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.15s 00:00:00.50 Elapsed: 00:00:00.38
# Mc/sec: 1823.53
//
Query:       MMETSP1137-20121227|8633_1  [L=135]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (135 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        61  (0.0148708); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.14s 00:00:00.30 Elapsed: 00:00:00.42
# Mc/sec: 424.25
//
Query:       MMETSP1137-20121227|8634_1  [L=82]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (82 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        67  (0.0163335); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.16s 00:00:00.31 Elapsed: 00:00:00.28
# Mc/sec: 373.21
//
Query:       MMETSP1137-20121227|8635_1  [L=45]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (45 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        41  (0.00999512); expected 82.0 (0.02)
Passed bias filter:                       40  (0.00975134); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.16s 00:00:00.27 Elapsed: 00:00:00.69
# Mc/sec: 86.08
//
Query:       MMETSP1137-20121227|8636_1  [L=293]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (293 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        36  (0.00877621); expected 82.0 (0.02)
Passed bias filter:                       11  (0.00268162); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.11s 00:00:00.38 Elapsed: 00:00:00.65
# Mc/sec: 594.97
//
Query:       MMETSP1137-20121227|8637_1  [L=290]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.1e-07   28.5   2.9    6.4e-06   23.7   0.2    2.4  2  TIGR02521 type_IV_pilW: type IV pilus biogenesis/stability protein PilW
    4.1e-07   26.1   6.1    0.00026   16.8   1.4    2.8  3  TIGR02917 PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein
    0.00017   19.2   2.5    0.00053   17.6   1.3    2.0  2  TIGR02552 LcrH_SycD: type III secretion low calcium response chaperone LcrH/SycD
    0.00072   17.4   0.1      0.041   11.9   0.0    3.1  4  TIGR00756 PPR: pentatricopeptide repeat domain
     0.0012   17.3   0.4     0.0012   17.3   0.3    2.5  3  TIGR02795 tol_pal_ybgF: tol-pal system protein YbgF
     0.0015   16.3   0.2      0.013   13.2   0.0    2.4  3  TIGR02561 HrpB1_HrpK: type III secretion protein HrpB1/HrpK
     0.0017   14.5   0.8     0.0017   14.5   0.5    1.7  2  TIGR03939 PGA_TPR_OMP: poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA


Domain annotation for each model (and alignments):
>> TIGR02521  type_IV_pilW: type IV pilus biogenesis/stability protein PilW
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.8   0.1    0.0063       3.7     119     166 ..      86     133 ..      73     160 .. 0.78
   2 !   23.7   0.2   1.1e-08   6.4e-06     114     200 ..     182     266 ..     174     287 .. 0.87

  Alignments for each domain:
  == domain 1    score: 4.8 bits;  conditional E-value: 0.0063
   TIGR02521 119 eqqfeaAiedpkYeqparsyeNaglcalkagdtekaekyltralkidp 166
                   q+++ ++dp  +q ++ +  ag+++l+++d+++a k l++  ++d 
  MMETSP1137-20121227|8637_1  86 VMQLKEWASDPSAQQNWQLLLMAGTVLLHEQDFKEALKLLHQNPQLDV 133
                 5677888899999**************************999887774 PP

  == domain 2    score: 23.7 bits;  conditional E-value: 1.1e-08
   TIGR02521 114 kyeeAeqqfeaAiedpkYeqparsyeNaglcalkagdtekaekyltralkidpkrpesllelaelklkkgqyaeAralleryqqtve 200
                 ky++A   f++   ++kY +    ++ +++c +++g++++ae  l++a+ +  + p s+ +l     + ++ +eA+ + ++ +++++
  MMETSP1137-20121227|8637_1 182 KYQDALYEFQE--LSEKYSTSVMLLNAMAICHMHLGRFDEAERLLQEAVSKSSNDPTSMANLITCMHHLRKSVEANRYTAQLKAMAP 266
                 67777777776..57789999999999************************************************999888777665 PP

>> TIGR02917  PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0      0.12        73      69     117 ..      12      61 ..      10      83 .. 0.77
   2 !    6.9   0.1   0.00042      0.25     357     393 ..      96     132 ..      49     135 .. 0.74
   3 !   16.8   1.4   4.4e-07   0.00026     314     400 ..     150     238 ..     148     277 .. 0.47

  Alignments for each domain:
  == domain 1    score: -1.2 bits;  conditional E-value: 0.12
   TIGR02917  69 qGdaaaAekeLrkAl.slgyskeqvlplLarayllqgkfqkvldelekks 117
                 +G++ +A+ e + +  s  ++ +q    + ra + qg++  v+de+++  
  MMETSP1137-20121227|8637_1  12 LGNYTQAVSEANSVHfSSDAARAQRDFFMYRAFVEQGQYRVVIDEVGASA 61 
                 68888888888887547778888888899999999999999999997765 PP

  == domain 2    score: 6.9 bits;  conditional E-value: 0.00042
   TIGR02917 357 ekdsddsallsllGeayLekgdfekAaeylakaseld 393
                  +++++ +ll ++G  +L+++df++A ++l ++ +ld
  MMETSP1137-20121227|8637_1  96 PSAQQNWQLLLMAGTVLLHEQDFKEALKLLHQNPQLD 132
                 46789999**********************9998876 PP

  == domain 3    score: 16.8 bits;  conditional E-value: 4.4e-07
   TIGR02917 314 AeqylnqilkaaPnshqArrllAaiqLkeg..kvdeaiatlspalekdsddsallsllGeayLekgdfekAaeylakaseldPenaaak 400
                 A+++l+++ +++ +  + +  +A + L+eg  k+++a+ + +++ ek s++  ll+   + ++++g f++A+++l++a + +++++   
  MMETSP1137-20121227|8637_1 150 ARNQLKAMQEQDDDATLTKLAAAWVALAEGgeKYQDALYEFQELSEKYSTSVMLLNAMAICHMHLGRFDEAERLLQEAVSKSSNDPTSM 238
                 44444444444444444444444555555433445555555555555555555555555555555555555555555555444443322 PP

>> TIGR02552  LcrH_SycD: type III secretion low calcium response chaperone LcrH/SycD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.1     0.082        48      76     119 ..     119     164 ..     106     178 .. 0.72
   2 !   17.6   1.3   9.1e-07   0.00053      12     108 ..     160     257 ..     149     283 .. 0.79

  Alignments for each domain:
  == domain 1    score: 1.5 bits;  conditional E-value: 0.082
   TIGR02552  76 alaaaldlddprpvyha..aecllalgekeeAlkaLklaieiaeek 119
                 + a++l  ++p+  + a   + +l +++   A++ Lk+  e +++ 
  MMETSP1137-20121227|8637_1 119 KEALKLLHQNPQLDVMAfvVQIFLTMHRADLARNQLKAMQEQDDDA 164
                 556666666776555441146689999999******9887766554 PP

  == domain 2    score: 17.6 bits;  conditional E-value: 9.1e-07
   TIGR02552  12 gldeeqleaiYalAYnlyqqg.kyeeAeklFqlLaaldpteakywlgLaaclqalkeyeeAiaaYalaaaldlddprpvyhaaecllalgekeeAlka 108
                 + d+ +l+++ a+  +l + g ky++A+  Fq L     t+   + ++a c++ l++++eA    + a++ + +dp  +  +  c+  l +  eA++ 
  MMETSP1137-20121227|8637_1 160 QDDDATLTKLAAAWVALAEGGeKYQDALYEFQELSEKYSTSVMLLNAMAICHMHLGRFDEAERLLQEAVSKSSNDPTSMANLITCMHHLRKSVEANRY 257
                 34456777776554445554467**********************************************************************99875 PP

>> TIGR00756  PPR: pentatricopeptide repeat domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0       2.5   1.5e+03       7      19 ..      41      53 ..      40      55 .. 0.75
   2 ?    1.9   0.0      0.11        65      10      25 ..     112     127 ..     110     127 .. 0.86
   3 ?   -3.2   0.0       4.5   2.6e+03      20      31 ..     138     149 ..     137     152 .. 0.76
   4 !   11.9   0.0     7e-05     0.041       4      29 ..     205     230 ..     202     236 .. 0.89

  Alignments for each domain:
  == domain 1    score: -2.4 bits;  conditional E-value: 2.5
   TIGR00756  7 isglckagrveeA 19
                 ++++++g+++ +
  MMETSP1137-20121227|8637_1 41 YRAFVEQGQYRVV 53
                5899999998765 PP

  == domain 2    score: 1.9 bits;  conditional E-value: 0.11
   TIGR00756  10 lckagrveeAlelfde 25 
                 l ++ +++eAl+l+++
  MMETSP1137-20121227|8637_1 112 LLHEQDFKEALKLLHQ 127
                 67889********986 PP

  == domain 3    score: -3.2 bits;  conditional E-value: 4.5
   TIGR00756  20 lelfdeMkergi 31 
                 +++f  M+++++
  MMETSP1137-20121227|8637_1 138 VQIFLTMHRADL 149
                 678999999886 PP

  == domain 4    score: 11.9 bits;  conditional E-value: 7e-05
   TIGR00756   4 ntlisglckagrveeAlelfdeMker 29 
                 n++  ++ + gr++eA++l++e +++
  MMETSP1137-20121227|8637_1 205 NAMAICHMHLGRFDEAERLLQEAVSK 230
                 89999****************98776 PP

>> TIGR02795  tol_pal_ybgF: tol-pal system protein YbgF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.1       2.7   1.6e+03      31      50 ..      14      33 ..       8      51 .. 0.53
   2 ?   -1.0   0.0      0.97   5.7e+02      82      98 ..     108     124 ..      79     129 .. 0.62
   3 !   17.3   0.3     2e-06    0.0012      16     104 ..     181     263 ..     144     276 .. 0.89

  Alignments for each domain:
  == domain 1    score: -2.5 bits;  conditional E-value: 2.7
   TIGR02795 31 kYPkstlapnAqYwlGealy 50
                +Y++    +n+  +   a  
  MMETSP1137-20121227|8637_1 14 NYTQAVSEANSVHFSSDAAR 33
                34444444444444443333 PP

  == domain 2    score: -1.0 bits;  conditional E-value: 0.97
   TIGR02795  82 lgeslqelgqkekAkkt 98 
                  g++l + ++ ++A k 
  MMETSP1137-20121227|8637_1 108 AGTVLLHEQDFKEALKL 124
                 44444444444444433 PP

  == domain 3    score: 17.3 bits;  conditional E-value: 2e-06
   TIGR02795  16 gdYakAeqaFkaFlkkYPkstlapnAqYwlGealyakkkykdAakaflevvkkypksekapdallklgeslqelgqkekAkktlqevik 104
                  +Y++A  +F++  +kY+ s +  nA   ++   +  + +++A++  +e+v+   ks+  p ++ +l +++ +l+++ +A ++  ++ +
  MMETSP1137-20121227|8637_1 181 EKYQDALYEFQELSEKYSTSVMLLNA---MAICHMHLGRFDEAERLLQEAVS---KSSNDPTSMANLITCMHHLRKSVEANRYTAQLKA 263
                 48************************...68899****************99...7888999999999999999999999999888765 PP

>> TIGR02561  HrpB1_HrpK: type III secretion protein HrpB1/HrpK
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0       1.5   8.9e+02      73     100 ..      54      81 ..      48      99 .. 0.78
   2 ?    0.7   0.0      0.15        88      57      93 ..     172     210 ..     154     211 .. 0.79
   3 !   13.2   0.0   2.2e-05     0.013      58      98 ..     209     249 ..     200     260 .. 0.88

  Alignments for each domain:
  == domain 1    score: -2.6 bits;  conditional E-value: 1.5
   TIGR02561  73 lrEllasagaapygkAllAlcLsakgDd 100
                 + E+ asa+ a  g  llA  L+  +++
  MMETSP1137-20121227|8637_1  54 IDEVGASAPLACQGVKLLATYLQGTREQ 81 
                 5688888888888888888888877665 PP

  == domain 2    score: 0.7 bits;  conditional E-value: 0.15
   TIGR02561  57 gvlliarg..nyddaaRilrEllasagaapygkAllAlc 93 
                 +++ +a g  +y+da   ++El+ + ++ ++    +A+c
  MMETSP1137-20121227|8637_1 172 AWVALAEGgeKYQDALYEFQELSEKYSTSVMLLNAMAIC 210
                 67777665448************9999887766666776 PP

  == domain 3    score: 13.2 bits;  conditional E-value: 2.2e-05
   TIGR02561  58 vlliargnyddaaRilrEllasagaapygkAllAlcLsakg 98 
                 + ++ +g++d+a R+l+E  +++++ p + A l  c++ ++
  MMETSP1137-20121227|8637_1 209 ICHMHLGRFDEAERLLQEAVSKSSNDPTSMANLITCMHHLR 249
                 56799**************************9999987665 PP

>> TIGR03939  PGA_TPR_OMP: poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.1      0.17        99     419     487 ..      55     126 ..      14     130 .. 0.71
   2 !   14.5   0.5   2.8e-06    0.0017      52     153 ..     166     268 ..     146     283 .. 0.80

  Alignments for each domain:
  == domain 1    score: -1.3 bits;  conditional E-value: 0.17
   TIGR03939 419 eellatAP.gNqslrlalaeveraRgwprrAeqllkkaesl..epdslsaergqaetaldlqewrqaealid 487
                 +e+ a+AP + q+++l    ++ +R++ ++   +lk+  s+  ++++ ++    + + l  q++++a +l++
  MMETSP1137-20121227|8637_1  55 DEVGASAPlACQGVKLLATYLQGTREQKDMVVMQLKEWASDpsAQQNWQLLLMAGTVLLHEQDFKEALKLLH 126
                 555666663346666666777777777777777777777777677777777777777888888887776665 PP

  == domain 2    score: 14.5 bits;  conditional E-value: 2.8e-06
   TIGR03939  52 dkkvldDllavlsWagedkevidvyery.slvglparelealAkAaRnekqwdkAlelyrkllqrdPknpdlllGlaltladagkdeeAlkalkelkerfpsd 153
                   k+ + ++a++   ++ ++++  ++++ +  +++   l+a+A     ++++d+A+ l +++ ++++++p+ ++ l+      +k+ eA  + ++lk+  p++
  MMETSP1137-20121227|8637_1 166 LTKLAAAWVALAEGGEKYQDALYEFQELsEKYSTSVMLLNAMAICHMHLGRFDEAERLLQEAVSKSSNDPTSMANLITCMHHLRKSVEANRYTAQLKAMAPTH 268
                 4567778889998899999999999999778888888999999999999999999999999999999999999999999999999999999999999887755 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (290 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       176  (0.0429059); expected 82.0 (0.02)
Passed bias filter:                      109  (0.0265724); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.37u 0.15s 00:00:00.52 Elapsed: 00:00:00.60
# Mc/sec: 637.95
//
Query:       MMETSP1137-20121227|8640_1  [L=312]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.2e-32  110.6   0.8    4.7e-27   93.2   0.0    2.4  3  TIGR00050 rRNA_methyl_1: RNA methyltransferase, TrmH family, group 1
    5.4e-05   21.0   0.0     0.0079   13.9   0.0    2.2  2  TIGR00185 rRNA_methyl_2: RNA methyltransferase, TrmH family, group 2
     0.0053   14.1   0.0     0.0083   13.4   0.0    1.2  1  TIGR00186 rRNA_methyl_3: RNA methyltransferase, TrmH family, group 3


Domain annotation for each model (and alignments):
>> TIGR00050  rRNA_methyl_1: RNA methyltransferase, TrmH family, group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   93.2   0.0   3.4e-30   4.7e-27       2     159 ..       9     178 ..       8     196 .. 0.84
   2 ?   -2.4   0.0      0.58   7.9e+02     167     191 ..     223     247 ..     210     271 .. 0.66
   3 !   14.8   0.7   3.1e-06    0.0042     195     231 ..     270     306 ..     243     308 .. 0.86

  Alignments for each domain:
  == domain 1    score: 93.2 bits;  conditional E-value: 3.4e-30
   TIGR00050   2 lenisivlvepktsgNvGsiARamknmGleeLilvnpkv..leeeaya.....laagak.dilenakvvddldealddldlvvgTsar...sralkkvlltPreladkllakkg.kvalvFGREdsGLtNEElekcdvlvsiptseeYpslNlsqAvavilYelreaklv 159
                 l   +++ v p++ gNvG++ARa  n+   eL lv p    l+e+a+       + +a   ++++a v+d+l++al d+++ vg + r    r  +++ +t  ela +++  +g ++alvFGRE +GL+  El +c    +ipts++  s+Nl+  +   l   +e+kl+
  MMETSP1137-20121227|8640_1   9 LASFRVICVSPSQGGNVGMAARACANFECGELALVAPDYdrLSEAAMSqerrfATQEAGlRVVQDALVFDSLEDALRDCSIAVGFTRRrgvMRSASSTQVTVGELAALSQTAAGgRTALVFGREADGLRSSELLQCTHTCEIPTSANHGSMNLAASITFALGRCFEEKLA 178
                 56789*******************************9877544444331111134444337*************************6669999999**********999888777***************************************9988777666666665 PP

  == domain 2    score: -2.4 bits;  conditional E-value: 0.58
   TIGR00050 167 keeatkedlelllekleelllslev 191
                  ++at ed+e l+ ++ +l +  + 
  MMETSP1137-20121227|8640_1 223 LQTATXEDIEHLMGRFLRLADPEAA 247
                 6889999999998888777655444 PP

  == domain 3    score: 14.8 bits;  conditional E-value: 3.1e-06
   TIGR00050 195 hkkrsvvkilrrllqRaklekeevalLkgilrkiekr 231
                  ++++   +l+r++qRa+l k+e+ +++ +l++ e++
  MMETSP1137-20121227|8640_1 270 TEAERNALVLKRIVQRARLSKKELRVMHNLLKQAERQ 306
                 456788899***********************99876 PP

>> TIGR00185  rRNA_methyl_2: RNA methyltransferase, TrmH family, group 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.9   0.0    0.0034       4.7       4      34 ..      14      45 ..      11      59 .. 0.84
   2 !   13.9   0.0   5.8e-06    0.0079      95     141 ..     124     169 ..      99     177 .. 0.81

  Alignments for each domain:
  == domain 1    score: 4.9 bits;  conditional E-value: 0.0034
   TIGR00185  4 ivlyePeiPnntGnivrtCaatka.elhlikP 34
                ++ ++P    n G  +r+Ca+++  el l+ P
  MMETSP1137-20121227|8640_1 14 VICVSPSQGGNVGMAARACANFECgELALVAP 45
                7788899999************9647999888 PP

  == domain 2    score: 13.9 bits;  conditional E-value: 5.8e-06
   TIGR00185  95 tdylvfGqetkGlPkslldelaeqklriPlteevrslnlsnavavvl 141
                 +  lvfG+e++Gl  s l +  +++  iP  ++  s+nl+ +++ +l
  MMETSP1137-20121227|8640_1 124 RTALVFGREADGLRSSELLQC-THTCEIPTSANHGSMNLAASITFAL 169
                 4479*********98876666.68899**************998765 PP

>> TIGR00186  rRNA_methyl_3: RNA methyltransferase, TrmH family, group 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.0     6e-06    0.0083     181     229 ..     117     165 ..      93     175 .. 0.81

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 6e-06
   TIGR00186 181 yekkktkklaLvvGnEgkGvrklikkksDflikipmagkvdSLNvSVAt 229
                  +     + aLv G E  G+r     ++ +  +ip++ +  S+N+  ++
  MMETSP1137-20121227|8640_1 117 SQTAAGGRTALVFGREADGLRSSELLQCTHTCEIPTSANHGSMNLAASI 165
                 444555699***********************************86554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (312 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       100  (0.0243784); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.27u 0.14s 00:00:00.41 Elapsed: 00:00:00.42
# Mc/sec: 980.49
//
Query:       MMETSP1137-20121227|8641_1  [L=302]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.6e-09   35.2   8.5      4e-08   30.6   5.9    2.1  1  TIGR03921 T7SS_mycosin: type VII secretion-associated serine protease mycosin


Domain annotation for each model (and alignments):
>> TIGR03921  T7SS_mycosin: type VII secretion-associated serine protease mycosin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.6   5.9   9.8e-12     4e-08       2      75 ..     162     261 ..     161     264 .. 0.75

  Alignments for each domain:
  == domain 1    score: 30.6 bits;  conditional E-value: 9.8e-12
   TIGR03921   2 eleeawklstGagv.tVAViDtGvd.rhPrLpgev..aGgDlve.....sgdged.dcd........g........hGTlvAglIAarpaegsGfvGvAP 75 
                  +eeaw ++ G+ v +VA+iDtGvd +hP+L ++   + g++ +     + +g   dc         g        hGT vAg++Aa  +++ G++G A 
  MMETSP1137-20121227|8641_1 162 GMEEAWSITGGSEVvVVAIIDTGVDmDHPDLLRNSwiNEGEICGneiddDNNGYVdDCRgynfadktGtqllgegdHGTHVAGIVAADTNNEVGVAGTAG 261
                 689********986268**************888778766666655555666665577744444444144444556*********************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (302 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        98  (0.0238908); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.25u 0.13s 00:00:00.38 Elapsed: 00:00:00.52
# Mc/sec: 766.55
//
Query:       MMETSP1137-20121227|8642_1  [L=259]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.4e-36  123.7   2.6    3.1e-36  123.3   0.2    2.0  2  TIGR02349 DnaJ_bact: chaperone protein DnaJ
    1.4e-26   90.9   0.8    1.8e-26   90.6   0.5    1.1  1  TIGR03835 termin_org_DnaJ: terminal organelle assembly protein TopJ
    1.4e-06   26.4   0.1      2e-06   25.8   0.1    1.1  1  TIGR00714 hscB: Fe-S protein assembly co-chaperone HscB


Domain annotation for each model (and alignments):
>> TIGR02349  DnaJ_bact: chaperone protein DnaJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  123.3   0.2   2.3e-39   3.1e-36       1     103 [.       9     110 ..       9     144 .. 0.86
   2 ?    0.5   0.1     0.051        70      87     129 ..     191     235 ..     151     248 .. 0.48

  Alignments for each domain:
  == domain 1    score: 123.3 bits;  conditional E-value: 2.3e-39
   TIGR02349   1 dYYeiLgvskdAseeeikkAYrklakkyHPDrnkg.ekeaeekfkeineAyevLsdeekraqYDqfghagleggaggggagfegfeasefgdigdifeeffggg 103
                 dYY iLgvs++Ase+eikkAYrkla k+HPD+n++ + +ae  fke++eAye Lsd++kra+YD++g+agl+g+a++gg+ + + +  +f d +++f+ ffgg+
  MMETSP1137-20121227|8642_1   9 DYYAILGVSRSASEAEIKKAYRKLAVKWHPDKNPNdRGTAEYMFKEVAEAYETLSDPQKRAAYDRYGRAGLNGAAAQGGG-MPQGH-YSFHDAEELFNAFFGGR 110
                 9********************************9834579999******************************8877544.44444.47999999999999965 PP

  == domain 2    score: 0.5 bits;  conditional E-value: 0.051
   TIGR02349  87 sefgdigdifeeffggggg.sgrr.rskarrgedlevelelslee 129
                 s++g+ + + +++ ++++  +g+r +++++r +d   +++++ ee
  MMETSP1137-20121227|8642_1 191 SSMGGAQGCSRSVSSTTTVqNGQRiTRRETRTTDADGKVKVEVEE 235
                 223332222222222222222233455556666666666666655 PP

>> TIGR03835  termin_org_DnaJ: terminal organelle assembly protein TopJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.6   0.5   1.3e-29   1.8e-26       1      74 [.       7      82 ..       7     130 .. 0.80

  Alignments for each domain:
  == domain 1    score: 90.6 bits;  conditional E-value: 1.3e-29
   TIGR03835  1 krDyyevLgidrDadeqeikkafrkLakkyhPDrnka..adaakifaeineandvLsnPkkraryDkyGhDGvDre 74
                k Dyy +Lg++r a e eikka+rkLa k+hPD+n +    a+ +f+e+ ea++ Ls+P+kra yD+yG  G+++ 
  MMETSP1137-20121227|8642_1  7 KNDYYAILGVSRSASEAEIKKAYRKLAVKWHPDKNPNdrGTAEYMFKEVAEAYETLSDPQKRAAYDRYGRAGLNGA 82
                78********************************9654799*******************************9864 PP

>> TIGR00714  hscB: Fe-S protein assembly co-chaperone HscB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.8   0.1   1.5e-09     2e-06       7      56 ..      24      71 ..      20      72 .. 0.93

  Alignments for each domain:
  == domain 1    score: 25.8 bits;  conditional E-value: 1.5e-09
   TIGR00714  7 aLrkryrklQkqyHPDvsksaqeqaaalqqStelNqAykTLkdplkRaey 56
                 ++k yrkl +++HPD  k+  ++ +a     e+ +Ay+TL dp kRa y
  MMETSP1137-20121227|8642_1 24 EIKKAYRKLAVKWHPD--KNPNDRGTAEYMFKEVAEAYETLSDPQKRAAY 71
                67899***********..999999999999******************88 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (259 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       138  (0.0336421); expected 82.0 (0.02)
Passed bias filter:                      114  (0.0277913); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.25u 0.13s 00:00:00.38 Elapsed: 00:00:00.38
# Mc/sec: 899.61
//
Query:       MMETSP1137-20121227|8643_1  [L=50]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (50 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        43  (0.0104827); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.32
# Mc/sec: 206.23
//
Query:       MMETSP1137-20121227|8644_1  [L=261]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (261 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        98  (0.0238908); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.14s 00:00:00.36 Elapsed: 00:00:00.37
# Mc/sec: 931.06
//
Query:       MMETSP1137-20121227|8645_1  [L=257]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (257 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       135  (0.0329108); expected 82.0 (0.02)
Passed bias filter:                      115  (0.0280351); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.18s 00:00:00.43 Elapsed: 00:00:01.56
# Mc/sec: 217.44
//
Query:       MMETSP1137-20121227|8646_1  [L=524]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.8e-76  254.4   0.0    3.4e-58  195.0   0.0    2.1  2  TIGR01249 pro_imino_pep_1: prolyl aminopeptidase
    3.9e-16   57.3   0.0    1.7e-15   55.2   0.0    1.8  2  TIGR01250 pro_imino_pep_2: proline-specific peptidases
    7.5e-09   33.2   0.1      2e-05   22.0   0.0    2.2  2  TIGR02427 protocat_pcaD: 3-oxoadipate enol-lactonase
    1.9e-07   28.6   0.0    8.3e-06   23.2   0.0    2.2  2  TIGR03611 RutD: pyrimidine utilization protein D
    1.3e-06   26.1   0.0      0.025   12.0   0.0    2.3  2  TIGR01738 bioH: putative pimeloyl-BioC--CoA transferase BioH
    3.3e-05   21.3   0.0      0.002   15.4   0.0    2.2  2  TIGR03695 menH_SHCHC: 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase
    0.00029   17.9   0.0    0.00051   17.0   0.0    1.3  1  TIGR01392 homoserO_Ac_trn: homoserine O-acetyltransferase
     0.0057   13.7   0.0     0.0093   13.0   0.0    1.2  1  TIGR03343 biphenyl_bphD: 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase


Domain annotation for each model (and alignments):
>> TIGR01249  pro_imino_pep_1: prolyl aminopeptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  195.0   0.0   6.7e-61   3.4e-58       5     199 ..      68     272 ..      64     283 .. 0.90
   2 !   57.3   0.0   5.8e-19     3e-16     213     294 ..     417     497 ..     404     508 .. 0.88

  Alignments for each domain:
  == domain 1    score: 195.0 bits;  conditional E-value: 6.7e-61
   TIGR01249   5 ekGylkvsdvhqlyyeesGnPdGkPvvflhGGPGsGtdeecrkffdpevyrivlldqrGaGkskphaileenttwdlvadieklreklkikkWl.vfGGsWGstlalayaqkhPekvtklvlrgifllrkkelewly.egglasalyPdewerfvdsipeaern.......eql.veayhkrlqsedeevklaaakaWadWesta 199
                 + G+l vs  h ly+e+ G P G   +flhGGPG+G++ +   ffdp +y+ vl+dqrG+G+s+p   l+en+   lv d e lr +l+  +W  v+GGsWG tlalaya +hP +v  lvlr++ l+r++e++wl+  +g+a++l P++w+ f  +   +e +       ++l v  ++   + +d  + + aa aW  We++ 
  MMETSP1137-20121227|8646_1  68 RTGQLPVSGGHLLYFEQHGCPSGAAALFLHGGPGAGCNARHAGFFDPSFYQAVLFDQRGCGRSTPRGSLHENNVERLVDDXEALRAHLGFDRWEvVLGGSWGVTLALAYAARHPSRVGSLVLRAVCLMRRREISWLFgSSGGARRLLPERWDAFSSAXGAVEDSpsdsgdgDDLqVLRWYAGAMAGDGPTGQXAASAWFGWEMSI 272
                 689******************************************************************************************7358**************************************87356889***********98877766544445555444367788888999****************953 PP

  == domain 2    score: 57.3 bits;  conditional E-value: 5.8e-19
   TIGR01249 213 daklslalarlenhyfvnkgflesenalldniskikniktvivqGrydlvcPlqsalalkkafPeaelkvvqdaGhsasdpn 294
                  +  + a a l +hy vn++  + e++ll  +  ++ i+ + vqG  dl+cP   a++l+k++Pe+el++v++aGhs +d +
  MMETSP1137-20121227|8646_1 417 KPSTVSAQAVLTSHYSVNHAARP-EDELLSCAPTLRSIPCIAVQGGNDLICPPVTAFELHKSWPEMELRIVHGAGHSMYDLQ 497
                 456778999***********988.999**************************************************99865 PP

>> TIGR01250  pro_imino_pep_2: proline-specific peptidases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.2   0.0   3.3e-18   1.7e-15       5     129 ..      70     192 ..      67     196 .. 0.84
   2 ?   -1.1   0.0      0.46   2.4e+02     232     271 ..     453     493 ..     451     501 .. 0.83

  Alignments for each domain:
  == domain 1    score: 55.2 bits;  conditional E-value: 3.3e-18
   TIGR01250   5 kiitldggyvlftkvkeegekikllvlHGGPgssheyleslkellke.gvevilYDQLGsgkSdqPddsdeklltidrfvdEleevrekLaldk.fyllgqSwGglLaqeYalkyqqhlkgliissm 129
                 + + ++gg+ l+ + ++   ++  l lHGGPg  ++  +  + +++    + +l+DQ G+g+S  P  s  +  +++r vd+ e++r +L+ d+   +lg SwG +La++Ya + ++ + +l++   
  MMETSP1137-20121227|8646_1  70 GQLPVSGGHLLYFEQHGCPSGAAALFLHGGPGAGCNARH--AGFFDPsFYQAVLFDQRGCGRST-PRGSL-HENNVERLVDDXEALRAHLGFDRwEVVLGGSWGVTLALAYAARHPSRVGSLVLRAV 192
                 667889999888888888889**************9744..444554457899*********96.65544.3579*******************7789************************99765 PP

  == domain 2    score: -1.1 bits;  conditional E-value: 0.46
   TIGR01250 232 vPtLltvgefde.mtpeaaremqekiaksrlvvfedgshlt 271
                 +P + + g +d  ++p +a e++++ ++ +l++++ ++h  
  MMETSP1137-20121227|8646_1 453 IPCIAVQGGNDLiCPPVTAFELHKSWPEMELRIVHGAGHSM 493
                 788888888886378889999***********999999865 PP

>> TIGR02427  protocat_pcaD: 3-oxoadipate enol-lactonase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.0   0.0   3.8e-08     2e-05      40     111 ..     117     191 ..     103     202 .. 0.87
   2 !    8.9   0.1   0.00036      0.18     184     232 ..     442     491 ..     409     505 .. 0.83

  Alignments for each domain:
  == domain 1    score: 22.0 bits;  conditional E-value: 3.8e-08
   TIGR02427  40 frvlryDkrGHGlS..dvpegpysiedladdvlallDalgiekaa.vcGlSlGGliaqaLaarrpdrvealvlsn 111
                 ++ + +D+rG G+S       +  +e l+dd  al  +lg ++ + v+G S G  +a+a aar+p rv +lvl +
  MMETSP1137-20121227|8646_1 117 YQAVLFDQRGCGRStpRGSLHENNVERLVDDXEALRAHLGFDRWEvVLGGSWGVTLALAYAARHPSRVGSLVLRA 191
                 67899*********5333345779*****************9976167************************965 PP

  == domain 2    score: 8.9 bits;  conditional E-value: 0.00036
   TIGR02427 184 dlrerleei.avPtlviaGdeDgstPpelvreiadlvpgarfaeieeaaH 232
                 +l   +  + ++P +++ G +D  +Pp ++ e+ ++ p+ ++  +++a+H
  MMETSP1137-20121227|8646_1 442 ELLSCAPTLrSIPCIAVQGGNDLICPPVTAFELHKSWPEMELRIVHGAGH 491
                 555555555259*************************************9 PP

>> TIGR03611  RutD: pyrimidine utilization protein D
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.2   0.0   1.6e-08   8.3e-06      40     110 ..     117     189 ..      82     194 .. 0.88
   2 ?    2.9   0.0     0.024        12     204     239 ..     458     493 ..     447     504 .. 0.85

  Alignments for each domain:
  == domain 1    score: 23.2 bits;  conditional E-value: 1.6e-08
   TIGR03611  40 frvvvyDhrGtgrsp.eelaedysiaalaadvlelldaldiekahvv.GhalGgliglelalrkperlaklvl 110
                 ++ v++D+rG+grs+ +   ++ ++++l +d  +l  +l+ ++ +vv G + G  ++l  a r+p+r+ +lvl
  MMETSP1137-20121227|8646_1 117 YQAVLFDQRGCGRSTpRGSLHENNVERLVDDXEALRAHLGFDRWEVVlGGSWGVTLALAYAARHPSRVGSLVL 189
                 899**********85255668899********************975499999999999999*******9997 PP

  == domain 2    score: 2.9 bits;  conditional E-value: 0.024
   TIGR03611 204 iaakDDlLvPytqsseLaekLPdaelklleyGghas 239
                 +   +Dl+ P +++ eL+++ P+ el +++  gh++
  MMETSP1137-20121227|8646_1 458 VQGGNDLICPPVTAFELHKSWPEMELRIVHGAGHSM 493
                 45568*************************99*986 PP

>> TIGR01738  bioH: putative pimeloyl-BioC--CoA transferase BioH
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.6   0.0   6.4e-05     0.033      64      99 ..     158     193 ..     114     205 .. 0.75
   2 !   12.0   0.0     5e-05     0.025     188     229 ..     452     493 ..     446     504 .. 0.93

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 6.4e-05
   TIGR01738  64 pakaiwlGWsLGGLvalhlalthpdkvrsLvlvass 99 
                 ++  ++lG s G  +al  a++hp +v sLvl a  
  MMETSP1137-20121227|8646_1 158 DRWEVVLGGSWGVTLALAYAARHPSRVGSLVLRAVC 193
                 666799*************************98854 PP

  == domain 2    score: 12.0 bits;  conditional E-value: 5e-05
   TIGR01738 188 svPvLrlyGqkDalvPakvvealdklapqsellvlekaahaP 229
                 s+P++ + G+ D + P+ ++ +l+k +p+ el ++++a+h+ 
  MMETSP1137-20121227|8646_1 452 SIPCIAVQGGNDLICPPVTAFELHKSWPEMELRIVHGAGHSM 493
                 68**************************************75 PP

>> TIGR03695  menH_SHCHC: 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0     4e-06     0.002       7     102 ..      95     190 ..      90     194 .. 0.81
   2 ?    3.5   0.0     0.018         9     213     237 ..     471     495 ..     440     504 .. 0.75

  Alignments for each domain:
  == domain 1    score: 15.4 bits;  conditional E-value: 4e-06
   TIGR03695   7 lLHGflgskedwqalieeleekfsvlalDLpgHGkskslkekeakdfeeaaqellkelleklkiekv.iLvGYSlGGRialalaleaperleglile 102
                 +LHG  g + + +++     + ++++++D  g G+s+   + + +++e+ +++  + l ++l+ ++  +++G S G  +ala+a+++p+r+ +l+l 
  MMETSP1137-20121227|8646_1  95 FLHGGPGAGCNARHAGFFDPSFYQAVLFDQRGCGRSTPRGSLHENNVERLVDD-XEALRAHLGFDRWeVVLGGSWGVTLALAYAARHPSRVGSLVLR 190
                 6666555544433332222245899************999*************.********888763678***********************996 PP

  == domain 2    score: 3.5 bits;  conditional E-value: 0.018
   TIGR03695 213 akemqkllpalklevieeaGHnihl 237
                 a e++k  p+++l++++ aGH ++ 
  MMETSP1137-20121227|8646_1 471 AFELHKSWPEMELRIVHGAGHSMYD 495
                 6689999**************9985 PP

>> TIGR01392  homoserO_Ac_trn: homoserine O-acetyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.0     1e-06   0.00051     116     162 ..     147     193 ..     136     205 .. 0.86

  Alignments for each domain:
  == domain 1    score: 17.0 bits;  conditional E-value: 1e-06
   TIGR01392 116 aqkalldsLgveklaavvGgSlGGmqalewalsypervkkivvlats 162
                   +al  +Lg +++++v+GgS G   al +a++ p rv ++v  a+ 
  MMETSP1137-20121227|8646_1 147 DXEALRAHLGFDRWEVVLGGSWGVTLALAYAARHPSRVGSLVLRAVC 193
                 5667889*********************************9987765 PP

>> TIGR03343  biphenyl_bphD: 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   0.0   1.8e-05    0.0093      29     132 ..      89     190 ..      76     198 .. 0.77

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 1.8e-05
   TIGR03343  29 egeavimlhgggpgaggwsnyyrniealvdagyrvilkdapgfnksdevvmdeqrglvnaravkglmdaldiekahl........vgnsmggatalnfaleypdrlgklilm 132
                  g a ++lhg gpgag  +   r  + +  + y+ +l d  g  +s      + rg +    v  l+d  +  +ahl        +g s g + al +a  +p r+g l+l 
  MMETSP1137-20121227|8646_1  89 SGAAALFLHG-GPGAGCNA---RHAGFFDPSFYQAVLFDQRGCGRS------TPRGSLHENNVERLVDDXEALRAHLgfdrwevvLGGSWGVTLALAYAARHPSRVGSLVLR 190
                 6889999996.79*99765...6778888899**********9987......467777777777777777777777544444433599999999****************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (524 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       155  (0.0377864); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                        18  (0.0043881); expected 4.1 (0.001)
Passed Fwd filter:                         8  (0.00195027); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.41u 0.13s 00:00:00.54 Elapsed: 00:00:00.63
# Mc/sec: 1097.81
//
Query:       MMETSP1137-20121227|8647_1  [L=168]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.071   11.3   3.2       0.09   10.9   2.2    1.2  1  TIGR02548 casB_cse2: CRISPR type I-E/ECOLI-associated protein CasB/Cse2


Domain annotation for each model (and alignments):
>> TIGR02548  casB_cse2: CRISPR type I-E/ECOLI-associated protein CasB/Cse2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   2.2   2.2e-05      0.09       4     103 ..       6     121 ..       4     142 .. 0.68

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 2.2e-05
   TIGR02548   4 alerlderder.araalRag...Lrraaepdpellafvfprllkdgaekeerraaylvaalaaahp............qsreekseqegislaralaekgrslasavsekRfeaLl 103
                 a ++++++++  a aa+Ra+   Lr +++++ +  + + +   ++ga++e   a++ vaa++ a              + ++++++++ ++ ++  +e + +l +a   +Rfe+ +
  MMETSP1137-20121227|8647_1   6 ATAQKKDDGAKaAEAAARAQsalLRACKNDELRHAETAIRKGAHAGAQDEHGNAPLHVAAMYGALRvmlflhsqgaelNVENKGKRTPLETARKVGEEGAIQLLEALAGGRFEEAQ 121
                 566777777667666666555547777777777777777888888*****************999888888665555333333333333333333333333477777777777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (168 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       140  (0.0341297); expected 82.0 (0.02)
Passed bias filter:                       97  (0.023647); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.20u 0.17s 00:00:00.37 Elapsed: 00:00:00.50
# Mc/sec: 443.48
//
Query:       MMETSP1137-20121227|8648_1  [L=210]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (210 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       157  (0.038274); expected 82.0 (0.02)
Passed bias filter:                      123  (0.0299854); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.17s 00:00:00.40 Elapsed: 00:00:00.35
# Mc/sec: 791.93
//
Query:       MMETSP1137-20121227|8649_1  [L=130]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (130 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        84  (0.0204778); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.16s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 612.81
//
Query:       MMETSP1137-20121227|8650_1  [L=484]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (484 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       196  (0.0477816); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.14s 00:00:00.47 Elapsed: 00:00:00.48
# Mc/sec: 1330.89
//
Query:       MMETSP1137-20121227|8651_1  [L=340]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      5e-98  325.2   0.0    6.4e-98  324.9   0.0    1.1  1  TIGR01258 pgm_1: phosphoglycerate mutase 1 family
    5.4e-16   56.4   0.0    6.8e-12   43.0   0.2    2.1  2  TIGR03162 ribazole_cobC: alpha-ribazole phosphatase
    1.8e-10   38.4   0.2    6.1e-10   36.7   0.2    1.7  2  TIGR03848 MSMEG_4193: probable phosphomutase, MSMEG_4193 family
    1.3e-07   29.4   0.0    2.5e-07   28.5   0.0    1.4  1  TIGR00249 sixA: phosphohistidine phosphatase SixA
     0.0027   15.2   1.1     0.0073   13.9   0.1    2.1  2  TIGR01280 xseB: exodeoxyribonuclease VII, small subunit
  ------ inclusion threshold ------
       0.04   10.7   0.0      0.062   10.1   0.0    1.2  1  TIGR01520 FruBisAldo_II_A: fructose-bisphosphate aldolase, class II


Domain annotation for each model (and alignments):
>> TIGR01258  pgm_1: phosphoglycerate mutase 1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  324.9   0.0  9.4e-101   6.4e-98       2     244 ..      84     335 ..      83     336 .. 0.96

  Alignments for each domain:
  == domain 1    score: 324.9 bits;  conditional E-value: 9.4e-101
   TIGR01258   2 klvlvrhGeseWnkenlftGWvdvelsekGkeeakeagkllkeeklefdvaytsllkraiktlnivldeldqlwlpvkksWrlnerhyGalqGldkaetaekyGeeqvkiwrrsfdvsPpeldekderspkkdrryaklkkkelPlteslkdtvervlPywedeiapelksgkrvlivahGnslralvkhleklsdeeilelniPtgiPlvyeldeelkpvkk.........kylgdeeavaaaaeavanqG 244
                  +v++rhG+s Wn+ nlftGW dvel+  Gk+ea+++++ + +e++  dvayts lkra +tl+ivl+ + q+ + v+k Wrlner yGal+Gl+k+et++kyGeeqvk+wrrs+ ++Ppe+d ++++ p + + ya++ +++lPl+e+lkdtver lPyw+  i+p+lk gk+vli+ahGns+r+++k l+++sde+i  l+iPtgiPlvy+ld++lkp+k+         ++l+d++a+aaa + va+q 
  MMETSP1137-20121227|8651_1  84 TVVFLRHGQSIWNEANLFTGWADVELTTLGKNEAAQGATQMWQEGIAIDVAYTSRLKRAQQTLEIVLKITGQEDVQVHKCWRLNERMYGALTGLNKKETVAKYGEEQVKQWRRSYSTPPPEIDLNSPHWPGNSNDYAHIPEEDLPLSECLKDTVERTLPYWNSDIVPALKRGKTVLIAAHGNSIRGILKALDDISDEDITGLEIPTGIPLVYHLDKDLKPIKSprasgflsgYFLADPKALAAAQKKVADQT 335
                 589*************************************************************************************************************************************************************************************************************************985444444443689999**********9996 PP

>> TIGR03162  ribazole_cobC: alpha-ribazole phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.0   0.2   9.9e-15   6.8e-12       1     106 [.      85     198 ..      85     205 .. 0.90
   2 !   11.1   0.0   6.2e-05     0.042     108     171 ..     224     290 ..     204     293 .. 0.79

  Alignments for each domain:
  == domain 1    score: 43.0 bits;  conditional E-value: 9.9e-15
   TIGR03162   1 lyLiRHgevevnkgkcY.GqtDvpLaekgeeqaaalrekl..edvkfdavvsSplsRcrelAella...eklklpiekddrLrEmdfGdwEgksydeisekyp..eldawakdl 106
                 ++++RHg+  +n+ + + G +Dv+L+  g+++aa+ ++++  e   +d  ++S l+R++++ e++     +++++++k  rL+E  +G+  g + +e + ky   ++++w +++
  MMETSP1137-20121227|8651_1  85 VVFLRHGQSIWNEANLFtGWADVELTTLGKNEAAQGATQMwqEGIAIDVAYTSRLKRAQQTLEIVLkitGQEDVQVHKCWRLNERMYGALTGLNKKETVAKYGeeQVKQWRRSY 198
                 689******************************999888877999******************98756589999****************************986778887765 PP

  == domain 2    score: 11.1 bits;  conditional E-value: 6.2e-05
   TIGR03162 108 harvpgGEsvadfsqRveeflee.lake..ekenvlivtHgGvirallahllglpleqllsieveyg 171
                 +  +p  E ++d ++R    +++ ++ +  ++++vli +Hg  ir +l  l +++ e+++ +e+++g
  MMETSP1137-20121227|8651_1 224 EEDLPLSECLKDTVERTLPYWNSdIVPAlkRGKTVLIAAHGNSIRGILKALDDISDEDITGLEIPTG 290
                 445778999**********9986255557899*******************9999998888877766 PP

>> TIGR03848  MSMEG_4193: probable phosphomutase, MSMEG_4193 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.7   0.2     9e-13   6.1e-10       1      94 [.      84     181 ..      84     201 .. 0.84
   2 ?   -1.5   0.0      0.44     3e+02     132     160 ..     243     271 ..     226     274 .. 0.74

  Alignments for each domain:
  == domain 1    score: 36.7 bits;  conditional E-value: 9e-13
   TIGR03848   1 tvllvrhgrstantaktLaGrtpGveLderGreqaaalaerl..adlpiaaivssPlercretveaiaear...glevavderltevdYGdWtGrelke 94 
                 tv+++rhg+s  n a++++G+++ veL+  G++ aa+ a+++  ++++i+  ++s l+r+++t+e +++ +    ++v+   rl+e  YG  tG + ke
  MMETSP1137-20121227|8651_1  84 TVVFLRHGQSIWNEANLFTGWAD-VELTTLGKNEAAQGATQMwqEGIAIDVAYTSRLKRAQQTLEIVLKITgqeDVQVHKCWRLNERMYGALTGLNKKE 181
                 89*******************97.***********99998874468********************99988322344445569**********977665 PP

  == domain 2    score: -1.5 bits;  conditional E-value: 0.44
   TIGR03848 132 eldarleeehgpdavwvavshgDviksvl 160
                  ++  +    +++++ ++ +hg+ i+ +l
  MMETSP1137-20121227|8651_1 243 YWNSDIVPALKRGKTVLIAAHGNSIRGIL 271
                 56666777777888899999999999887 PP

>> TIGR00249  sixA: phosphohistidine phosphatase SixA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.5   0.0   3.7e-10   2.5e-07       5      74 ..      87     160 ..      84     167 .. 0.85

  Alignments for each domain:
  == domain 1    score: 28.5 bits;  conditional E-value: 3.7e-10
   TIGR00249   5 lmrHGeAkekaa....sDkeRqLtkkGkdeaervaqwLkkagveldrilvSplvRAeqtaeivadaldesklev 74 
                  +rHG+   ++a       + +Lt+ Gk+ea + a  + ++g+ +d  ++S l RA+qt+eiv +  ++++++v
  MMETSP1137-20121227|8651_1  87 FLRHGQSIWNEAnlftGWADVELTTLGKNEAAQGATQMWQEGIAIDVAYTSRLKRAQQTLEIVLKITGQEDVQV 160
                 5789988777665665567889*****************************************99988666655 PP

>> TIGR01280  xseB: exodeoxyribonuclease VII, small subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.1   1.1e-05    0.0073      29      65 ..     121     157 ..     116     160 .. 0.90
   2 ?   -1.3   0.1      0.59     4e+02      45      56 ..     322     333 ..     321     339 .. 0.83

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 1.1e-05
   TIGR01280  29 alnlferGiaLakacekkLeeAeqkvekllkeedeav 65 
                 a + +++Gia+  a   +L+ A+q++e++lk  ++++
  MMETSP1137-20121227|8651_1 121 ATQMWQEGIAIDVAYTSRLKRAQQTLEIVLKITGQED 157
                 5679**************************9887765 PP

  == domain 2    score: -1.3 bits;  conditional E-value: 0.59
   TIGR01280  45 kkLeeAeqkvek 56 
                 k+L++A++kv++
  MMETSP1137-20121227|8651_1 322 KALAAAQKKVAD 333
                 6899*****987 PP

>> TIGR01520  FruBisAldo_II_A: fructose-bisphosphate aldolase, class II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0     9e-05     0.062     146     195 ..     123     172 ..     113     190 .. 0.86

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 9e-05
   TIGR01520 146 epieenieiakkylkrmakiklileieiGitGGeedGvdneeadkeelyt 195
                 +  +e i+i + y  r+ +++++lei + itG e+  v+   + +e +y 
  MMETSP1137-20121227|8651_1 123 QMWQEGIAIDVAYTSRLKRAQQTLEIVLKITGQEDVQVHKCWRLNERMYG 172
                 56799*****************************9999888877777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (340 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        86  (0.0209654); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.27u 0.15s 00:00:00.42 Elapsed: 00:00:00.72
# Mc/sec: 623.28
//
Query:       MMETSP1137-20121227|8652_1  [L=35]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (35 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        33  (0.00804486); expected 82.0 (0.02)
Passed bias filter:                       31  (0.00755729); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.15s 00:00:00.27 Elapsed: 00:00:00.52
# Mc/sec: 88.84
//
Query:       MMETSP1137-20121227|8653_1  [L=104]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (104 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       131  (0.0319356); expected 82.0 (0.02)
Passed bias filter:                      116  (0.0282789); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.10s 00:00:00.26 Elapsed: 00:00:00.73
# Mc/sec: 188.04
//
Query:       MMETSP1137-20121227|8654_1  [L=423]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (423 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       164  (0.0399805); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.11s 00:00:00.40 Elapsed: 00:00:00.56
# Mc/sec: 996.99
//
Query:       MMETSP1137-20121227|8655_1  [L=472]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (472 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        66  (0.0160897); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.16s 00:00:00.47 Elapsed: 00:00:00.50
# Mc/sec: 1245.98
//
Query:       MMETSP1137-20121227|8656_1  [L=666]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.03    9.8  36.3       0.42    6.0  20.1    2.1  1  TIGR02168 SMC_prok_B: chromosome segregation protein SMC


Domain annotation for each model (and alignments):
>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0  20.1    0.0001      0.42     735     941 ..     105     309 ..      97     326 .. 0.76

  Alignments for each domain:
  == domain 1    score: 6.0 bits;  conditional E-value: 0.0001
   TIGR02168 735 kelerlekeveqleerlaqlekeleeleeereeleeeleeaeeelkeaeeeieeleaeieqlkeelkalrealseleaeltelkeeaaekeerleslekeiaalekeleeleeqiee..leeeiesleaeieeleeeleeleeeleellkekasleealaelreeleelseelrelekkvkelereleelreklaqlelrleeleveia 941
                 + l+  e+++ ++ e++++++++++ +e  +++ + +l +a++ ++e  + +++ ++++ + +++l a r+++++ +ae+++l +  ++++e+    +k+++al+ ++++ +++ +e   ++ ++++e +i++l+ ++ + e++l+el  e a+++++l+elr++ +++++ + ++++++ +l  + e+ r++  +++l ++ + +++ 
  MMETSP1137-20121227|8656_1 105 MTLKIREQRISSALEQAQKASAQVQAAESYEMKSRVALYDASQXAAEGFRISAARRQSLVNSEAALRAARAEIDASKAEAQQLTRLSSKLQEA---AQKQVDALTSTAQQRAAKYREspSSAAAAEVETSIKRLRIAM-AEESRLAELVTECAKAQNNLDELRKSVSDARKAIVAAQEAQVALPFDQESERAASGAARLPISATALRRF 309
                 567788899999999999999999999999999999999999999999999999999999999999999999999999999888888877755...444555555555544444444115566667788888888874.5567788888888899999999999999999999999888888887777777777777777666666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (666 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       380  (0.0926377); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.15s 00:00:00.65 Elapsed: 00:00:00.74
# Mc/sec: 1187.90
//
Query:       MMETSP1137-20121227|8657_1  [L=375]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (375 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        63  (0.0153584); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.15s 00:00:00.42 Elapsed: 00:00:00.34
# Mc/sec: 1455.76
//
Query:       MMETSP1137-20121227|8658_1  [L=217]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (217 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       107  (0.0260848); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.14s 00:00:00.34 Elapsed: 00:00:00.41
# Mc/sec: 698.58
//
Query:       MMETSP1137-20121227|8659_1  [L=296]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0088   11.6  26.7       0.01   11.4  18.5    1.1  1  TIGR02168 SMC_prok_B: chromosome segregation protein SMC
  ------ inclusion threshold ------
      0.019   12.9   2.5      0.021   12.7   0.6    1.9  2  TIGR02271 TIGR02271: conserved domain
      0.024   10.1  25.6      0.029    9.8  17.8    1.0  1  TIGR02169 SMC_prok_A: chromosome segregation protein SMC
       0.38    7.0  29.3       0.32    7.2   5.5    2.1  2  TIGR03319 YmdA_YtgF: conserved hypothetical protein YmdA/YtgF


Domain annotation for each model (and alignments):
>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.4  18.5   9.8e-06      0.01     705     912 ..       7     211 ..       1     290 [. 0.41

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 9.8e-06
   TIGR02168 705 lekeleeleeeleklrkeleelerklselkkelerlekeveqleerlaqlekeleeleeereeleeeleeaeeelkeaeeeieeleaei.eqlkeelkalrealseleaeltelkeeaaekeerleslekeiaalekeleeleeqieeleeeiesleaeieeleeeleeleeeleellkekasleealaelree..leelseelrelekkv 912
                 l +     + ele  ++ele   r++s ++ +l+  e    q+++ l+++e +l+e+e   + +e++ ++ e ++++ e+  +  e++  ++   +  + r+  s++++e+++l+++aa+  ++++sl+ + aa+ ++++ +e+++e  e++ ++l ++ + l+ ++e+le e e++++ k ++ e+++++ +e  l+++s++l++ + + 
  MMETSP1137-20121227|8659_1   7 LHE----RQAELEARQEELEARLRSISLREGSLDDKELAMDQMQQALTRQEIALKEQETALRVAERAAAQREFAIAAREAAAQGREKQHgKRGGVDGVDGRRGRSSARDEIEALSARAAK--SQATSLRLKEAATLRKARFVERRAEAVEAKTAALGQKEAALKLQEEALEIEKESVQNVKLQVLEEVQAVVQEltLQAASAQLQTQQADY 211
                 222....22222222222222223334444444444444444444444444444444444444444333333333333333332222220222223333333334444444444444432..22233333333333333333333333333333333333333333333333333333333332222222222200111111111111111 PP

>> TIGR02271  TIGR02271: conserved domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0       1.8   1.8e+03      43      63 ..     141     160 ..     114     161 .. 0.67
   2 ?   12.7   0.6   2.1e-05     0.021       1      35 [.     163     197 ..     163     217 .. 0.90

  Alignments for each domain:
  == domain 1    score: -3.1 bits;  conditional E-value: 1.8
   TIGR02271  43 vierravdeneasdaeitdee 63 
                 ++erra    ea++a ++++e
  MMETSP1137-20121227|8659_1 141 FVERRAE-AVEAKTAALGQKE 160
                 5677665.3556666566555 PP

  == domain 2    score: 12.7 bits;  conditional E-value: 2.1e-05
   TIGR02271   1 lkLrkeqLdvnkekvqtgevklgkevvsekktvdv 35 
                 lkL++e L+++ke+vq+ ++++  ev+   +++++
  MMETSP1137-20121227|8659_1 163 LKLQEEALEIEKESVQNVKLQVLEEVQAVVQELTL 197
                 79************************999988876 PP

>> TIGR02169  SMC_prok_A: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8  17.8   2.8e-05     0.029     725     940 ..       3     224 ..       1     238 [. 0.66

  Alignments for each domain:
  == domain 1    score: 9.8 bits;  conditional E-value: 2.8e-05
   TIGR02169 725 eleqleeeeeklkerleeleeklsel...eeeleekkeelkeleaeieeleeklaklkealedleaelseekieeieeelekleee.vsriearleeieaelnklelekelleeeiqelqeeieeleeqkkeiekeieelkakleeleeeleeleaavreLeeelkdLkkereeleaelrelekkkee..leaeiekkrkrlkelkaklealeeelseleee 940
                 e+ +l+e++++l++r+eele++l+++   e  l +k+  ++++++ + ++e +l++ + al   e+  ++ ++    +e+ ++  e  +  ++ ++ ++ +  +++ + e++  + + ++++   l  +++++ ++    + + e++e++ + l ++++ L+ + + L+ e e +++ + ++ ++++   +e++++ +  +l++++a  ea+  +l++ +++
  MMETSP1137-20121227|8659_1   3 EVATLHERQAELEARQEELEARLRSIslrEGSLDDKELAMDQMQQALTRQEIALKEQETALRVAERAAAQREFAIAAREAAAQGREkQHGKRGGVDGVDGRRGRSSARDEIEALSARAAKSQATSLRLKEAATLRKARFVERRAEAVEAKTAALGQKEAALKLQEEALEIEKESVQNVKLQVLEEVQAvvQELTLQAASAQLQTQQADYEAAFAKLKSAGPA 224
                 556778888888888888888877762224568889999********************************99999988887755505557789999**999999977777777777777777777666666666666666666666666666655555555555555555555444333322222221123344444466666666666666666666553 PP

>> TIGR03319  YmdA_YtgF: conserved hypothetical protein YmdA/YtgF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   5.5   0.00032      0.32      65     128 ..       8      71 ..       1      82 [. 0.76
   2 ?    4.0  10.9     0.003       3.1      63     161 ..     109     211 ..      64     236 .. 0.74

  Alignments for each domain:
  == domain 1    score: 7.2 bits;  conditional E-value: 0.00032
   TIGR03319  65 eelekelkerrkelqklekrlkqkeekldrkkeklekkeeelekkekeleekekeleekeeele 128
                 +e ++el++r++el+++ + ++ +e +ld k+ ++++ +++l+++e +l+e+e+ l+  e+ + 
  MMETSP1137-20121227|8659_1   8 HERQAELEARQEELEARLRSISLREGSLDDKELAMDQMQQALTRQEIALKEQETALRVAERAAA 71 
                 5667788888888888888888888888888888888888888888888888888876665554 PP

  == domain 2    score: 4.0 bits;  conditional E-value: 0.003
   TIGR03319  63 lreele....kelkerrkelqklekrlkqkeekldrkkeklekkeeelekkekeleekekeleekeeeleellkeqkeeLekis.gltqeeAkellleeveeel 161
                 +r+e+e    + +k++ + l+ +e    +k   ++r++e++e k  +l +ke++l+ +e+ le ++e++++++ +  ee++ +  +lt + A ++ l++ ++++
  MMETSP1137-20121227|8659_1 109 ARDEIEalsaRAAKSQATSLRLKEAATLRKARFVERRAEAVEAKTAALGQKEAALKLQEEALEIEKESVQNVKLQVLEEVQAVVqELTLQAASAQ-LQTQQADY 211
                 4455441111456777788889999999999999999999**********************999999999999999999886515666655554.44444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (296 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       422  (0.102877); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.34u 0.15s 00:00:00.49 Elapsed: 00:00:00.49
# Mc/sec: 797.32
//
Query:       MMETSP1137-20121227|8660_1  [L=462]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.8e-74  247.6   0.1    4.6e-74  246.9   0.1    1.3  1  TIGR00216 ispH_lytB: 4-hydroxy-3-methylbut-2-enyl diphosphate reductase


Domain annotation for each model (and alignments):
>> TIGR00216  ispH_lytB: 4-hydroxy-3-methylbut-2-enyl diphosphate reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  246.9   0.1   1.1e-77   4.6e-74       3     279 ..     110     452 ..     108     455 .. 0.89

  Alignments for each domain:
  == domain 1    score: 246.9 bits;  conditional E-value: 1.1e-77
   TIGR00216   3 ilakalGfCfGVerAvkiaeeark.elgkkvyvlgeivHNkevverLrekgvali.....ledldelakgdtviirahGvskevleelekkglevvdaTCPlVtkvhkevkklakkgykviliGkknHpEvigiegevpekailvedl.......................eeleelkla....dek...rlvvvsQTTlskeeteeivkllkkrlpekeveve........ntiCdaTqerqdavkel.....akevdlllviggknSsNtkrLleiaeeeglksvliesaeelk.................eeilkavkv..vgitaGaStPdkvveevikkl 279
                  lak++GfC+GV+r ++ a  ar+  +++ + +++e++HN+ v+e L+ ++v++i      + +d +++g++vi++a+G+s e+++ l k+g++vvd+TCP+V+kv+++v k++k +++++++Gk  H+E i++ +++ +  i+v+d+                       e+ +++ ++    + k   r+++++QTT+ k+et++i  ll+k++ +++++ e        +tiCdaTq+rqda+ e+     a e+dl+lv+gg +SsNt +Llei  ++g+ +++i++   ++                 ++ l+  +   +g+t+GaStPd+vv+ev++++
  MMETSP1137-20121227|8660_1 110 KLAKEYGFCWGVDRSIELAWAAREaYPDQTMHITNELIHNPAVNEMLEGMDVKFIektaeGKRFDTVKEGEVVILPAFGASLEEMQLLDKRGVTVVDTTCPWVSKVWTTVDKYTKADRTSVIHGKWAHEESIATASMCDHY-IIVKDMdeaqeiasyimqepgaltdeqllEKYKNAVSKgfdpK-KhlrRIGIANQTTMYKKETQAIGRLLEKAMVARYGPEEaadnfaafDTICDATQVRQDAITEMtvgpdADELDLILVVGGWDSSNTGHLLEIPIHNGKVAYHINKGTCITedntithrlvngdvettKDFLPLDRPvrIGVTSGASTPDSVVQEVLERI 452
                 589*********************66788899**********************98888778899***********************************************************************77655.5555554667777778888888888766655555543366442.24669*************************9999999899999999***************9855555678*******************************************************9888887665579****************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (462 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       125  (0.0304729); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.18s 00:00:00.52 Elapsed: 00:00:00.36
# Mc/sec: 1693.86
//
Query:       MMETSP1137-20121227|8661_1  [L=338]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (338 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        73  (0.0177962); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.16s 00:00:00.41 Elapsed: 00:00:00.42
# Mc/sec: 1062.20
//
Query:       MMETSP1137-20121227|8663_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        37  (0.00901999); expected 82.0 (0.02)
Passed bias filter:                       36  (0.00877621); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.24
# Mc/sec: 280.48
//
Query:       MMETSP1137-20121227|8664_1  [L=410]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (410 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       112  (0.0273038); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.13s 00:00:00.40 Elapsed: 00:00:00.55
# Mc/sec: 983.92
//
Query:       MMETSP1137-20121227|8665_1  [L=785]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (785 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       177  (0.0431497); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.32s 00:00:00.67 Elapsed: 00:00:01.14
# Mc/sec: 900.97
//
Query:       MMETSP1137-20121227|8666_1  [L=332]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (332 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       180  (0.043881); expected 82.0 (0.02)
Passed bias filter:                       99  (0.0241346); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.20s 00:00:00.41 Elapsed: 00:00:00.66
# Mc/sec: 663.95
//
Query:       MMETSP1137-20121227|8667_1  [L=358]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (358 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        33  (0.00804486); expected 82.0 (0.02)
Passed bias filter:                       27  (0.00658216); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.21s 00:00:00.40 Elapsed: 00:00:00.48
# Mc/sec: 984.42
//
Query:       MMETSP1137-20121227|8668_1  [L=434]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (434 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        55  (0.0134081); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.17s 00:00:00.46 Elapsed: 00:00:00.63
# Mc/sec: 909.26
//
Query:       MMETSP1137-20121227|8669_1  [L=349]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.43    6.8  20.0       0.55    6.4  13.9    1.3  1  TIGR02442 Cob-chelat-sub: cobaltochelatase subunit
        6.3    2.8  12.4        7.2    2.6   8.6    1.1  1  TIGR00934 2a38euk: potassium uptake protein, Trk family
        7.6    3.4  10.2         11    2.9   7.1    1.3  1  TIGR01347 sucB: dihydrolipoyllysine-residue succinyltransferase, E2 component of oxoglutarate dehydrogenase (succinyl-transferring) complex


Domain annotation for each model (and alignments):
>> TIGR02442  Cob-chelat-sub: cobaltochelatase subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4  13.9    0.0004      0.55     301     418 ..     157     277 ..      87     296 .. 0.64

  Alignments for each domain:
  == domain 1    score: 6.4 bits;  conditional E-value: 0.0004
   TIGR02442 301 aaeLvlkhRrrrkpfeeeqekeekkleekkeeakpdeekedes..eekekeeskkqeeeepgkddekeedekeeaeeeaesaeevalepagkifrvkllavskar.argasGrrsktrs.dk 418
                 a eL++ +R++r    ++q+++    ee+++ +++++++ d++  ++++++++++q+++++++++++++++++++++e e+ + +  +p ++++ +++ ++++++ a+  sG  s+ +  ++
  MMETSP1137-20121227|8669_1 157 ADELAV-PRAKRVCRRDAQSTSGVAVEESTHGHHHHHHRSDDDdqQRHQQQQHHQQQQQQQQQHQQQQQQQQQQQQQEGEDVHYRVQSPSDDVVMTDAPSAANSSnASAPSGLDSDEQMpAA 277
                 445554.4566555555556666666666665555544444441122222233333344445555555555555666666666677777788888777777777447777777766655422 PP

>> TIGR00934  2a38euk: potassium uptake protein, Trk family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   8.6    0.0053       7.2     241     434 ..     163     280 ..      75     297 .. 0.42

  Alignments for each domain:
  == domain 1    score: 2.6 bits;  conditional E-value: 0.0053
   TIGR00934 241 psekfakrresrdidpedlyrsimmlqekheatakirdkiseanslaaesdeessesrriqekikrrlstssieknsqqnltrlaktksfddskavrlersktidraeasdleeldrakdfqkmveknvkaakrkkknfkkreanlklfeksryakksdrneedngn..................kkdasksneseevsldseenayptynd 434
                 p +k + rr+++  +   +++s   + ++h  ++                                                                              ++ +r++                 ++ ++++++++  ++ + +++ +++++++g+                     a +sn s    lds+e+  ++ +d
  MMETSP1137-20121227|8669_1 163 PRAKRVCRRDAQSTSGVAVEESTHGHHHHHHRSD-----------------------------------------------------------------------------DDDQQRHQ-----------------QQQHHQQQQQQQQQHQQQQQQQQQQQQQEGEdvhyrvqspsddvvmtdaPSAANSSNASAPSGLDSDEQMPAAQQD 280
                 3333333333333333222222222222222111.............................................................................11111111.................1111111111111111111111111111111222222222222222221333333444444444444433333333 PP

>> TIGR01347  sucB: dihydrolipoyllysine-residue succinyltransferase, E2 component of oxoglutarate dehydrogenase (succinyl-transferring) complex
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   7.1     0.008        11     137     169 ..     198     232 ..     116     296 .. 0.47

  Alignments for each domain:
  == domain 1    score: 2.9 bits;  conditional E-value: 0.008
   TIGR01347 137 tgrvtkedivkkeekk..asaakeaaakaakaaen 169
                 +++ ++++++++++++  +++++++++++++++++
  MMETSP1137-20121227|8669_1 198 DDQQRHQQQQHHQQQQqqQQQHQQQQQQQQQQQQQ 232
                 11111111111111110011111111111111111 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (349 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       628  (0.153096); expected 82.0 (0.02)
Passed bias filter:                      205  (0.0499756); expected 82.0 (0.02)
Passed Vit filter:                        60  (0.014627); expected 4.1 (0.001)
Passed Fwd filter:                        14  (0.00341297); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.56u 0.18s 00:00:00.74 Elapsed: 00:00:01.10
# Mc/sec: 418.77
//
Query:       MMETSP1137-20121227|8670_1  [L=66]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (66 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        98  (0.0238908); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.17s 00:00:00.29 Elapsed: 00:00:00.76
# Mc/sec: 114.62
//
Query:       MMETSP1137-20121227|8671_1  [L=77]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (77 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       132  (0.0321794); expected 82.0 (0.02)
Passed bias filter:                       98  (0.0238908); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.17s 00:00:00.29 Elapsed: 00:00:00.48
# Mc/sec: 211.73
//
Query:       MMETSP1137-20121227|8672_1  [L=398]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.2e-07   28.5   0.6      0.025   12.6   0.0    4.6  5  TIGR00756 PPR: pentatricopeptide repeat domain
    0.00026   17.9   0.1    0.00037   17.4   0.0    1.1  1  TIGR01622 SF-CC1: splicing factor, CC1-like family
     0.0019   15.2   0.0     0.0028   14.7   0.0    1.2  1  TIGR01628 PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family
  ------ inclusion threshold ------
      0.031   11.1   0.0      0.043   10.6   0.0    1.1  1  TIGR01649 hnRNP-L_PTB: hnRNP-L/PTB/hephaestus splicing factor family


Domain annotation for each model (and alignments):
>> TIGR00756  PPR: pentatricopeptide repeat domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.7   0.0    0.0018       1.9      19      34 ..     169     185 ..     169     186 .. 0.89
   2 !   12.6   0.0   2.4e-05     0.025       2      34 ..     188     220 ..     187     221 .. 0.94
   3 ?    3.8   0.0     0.015        15      22      35 .]     253     266 ..     250     266 .. 0.89
   4 ?   -2.3   0.0       1.4   1.4e+03      19      34 ..     295     311 ..     293     312 .. 0.72
   5 ?   -3.3   0.0       2.8   2.8e+03       2      11 ..     314     323 ..     314     323 .. 0.83

  Alignments for each domain:
  == domain 1    score: 6.7 bits;  conditional E-value: 0.0018
   TIGR00756  19 AlelfdeMker.givPd 34 
                 A+ l+++Mk+r +ivPd
  MMETSP1137-20121227|8672_1 169 AETLWRQMKRRgDIVPD 185
                 899*****999899999 PP

  == domain 2    score: 12.6 bits;  conditional E-value: 2.4e-05
   TIGR00756   2 tyntlisglckagrveeAlelfdeMkergivPd 34 
                 ++n+++  + ++ ++++  +l+++M +++ +P+
  MMETSP1137-20121227|8672_1 188 AHNAMLEIFQEQDEFDKFYDLWNKMNSKKYRPS 220
                 58***************************9997 PP

  == domain 3    score: 3.8 bits;  conditional E-value: 0.015
   TIGR00756  22 lfdeMkergivPda 35 
                 l+++Mk +g++Pd+
  MMETSP1137-20121227|8672_1 253 LLKKMKNAGLRPDI 266
                 89**********95 PP

  == domain 4    score: -2.3 bits;  conditional E-value: 1.4
   TIGR00756  19 AlelfdeM.kergivPd 34 
                 ++++f +M + ++i+P+
  MMETSP1137-20121227|8672_1 295 VMRFFARMvLVDKIRPT 311
                 57889999666677776 PP

  == domain 5    score: -3.3 bits;  conditional E-value: 2.8
   TIGR00756   2 tyntlisglc 11 
                 +y  l+++++
  MMETSP1137-20121227|8672_1 314 SYKLLLDCYA 323
                 688899**96 PP

>> TIGR01622  SF-CC1: splicing factor, CC1-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.0   3.6e-07   0.00037     230     314 ..      29     111 ..      13     150 .. 0.63

  Alignments for each domain:
  == domain 1    score: 17.4 bits;  conditional E-value: 3.6e-07
   TIGR01622 230 nitEqeLrqiFepFGeielvqlqkDpetGrskGyGFiqFsdaeeakeAleklNGlelAGReikvglasD.vteesdaslaskfeds 314
                 + +  ++ +    FG+i+ + +++ +   + kG   ++F+ a+ ak+Al +   l+l G  + v  a+D    +++a+   + +++
  MMETSP1137-20121227|8672_1  29 SASSGQITNALSRFGQIKEIHIHQTSS--QQKGTALVTFETAKAAKAALAT-SCLNLKGGAVAVEKAEDtDLAKTQAEWVASIAED 111
                 455556666777788888888877654..4788888888888888877754.5688888888888888753444444443333333 PP

>> TIGR01628  PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0   2.7e-06    0.0028     178     237 ..      18      76 ..      11     148 .. 0.72

  Alignments for each domain:
  == domain 1    score: 14.7 bits;  conditional E-value: 2.7e-06
   TIGR01628 178 ftNlYvKnlddsvtedklrelFakfGeitSaivkkdeknrkrgfafvnyekaedAkkAve 237
                 +  + ++n++ s +  ++ +  ++fG+i  + +++ ++++k g a v +e+a +Ak A+ 
  MMETSP1137-20121227|8672_1  18 HARVVLRNVPCSASSGQITNALSRFGQIKEIHIHQTSSQQK-GTALVTFETAKAAKAALA 76 
                 55667788888888888888888999998888888888775.888999988888888764 PP

>> TIGR01649  hnRNP-L_PTB: hnRNP-L/PTB/hephaestus splicing factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   4.2e-05     0.043       5      57 ..      21      77 ..      18     117 .. 0.79

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 4.2e-05
   TIGR01649  5 vHvRnlpeevveadlvelliefGkvsyvlvlkgkrq....AlvEfedeesAkalVnf 57
                v +Rn+p +   +++ ++l++fG++  + + ++++q    Alv fe+ ++Aka+   
  MMETSP1137-20121227|8672_1 21 VVLRNVPCSASSGQITNALSRFGQIKEIHIHQTSSQqkgtALVTFETAKAAKAALAT 77
                458**********************999887655444444***********997643 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (398 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       205  (0.0499756); expected 82.0 (0.02)
Passed bias filter:                      133  (0.0324232); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.35u 0.16s 00:00:00.51 Elapsed: 00:00:00.44
# Mc/sec: 1193.90
//
Query:       MMETSP1137-20121227|8673_1  [L=140]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (140 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        81  (0.0197465); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.13s 00:00:00.28 Elapsed: 00:00:00.28
# Mc/sec: 659.95
//
Query:       MMETSP1137-20121227|8674_1  [L=390]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (390 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       100  (0.0243784); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.17s 00:00:00.48 Elapsed: 00:00:00.75
# Mc/sec: 686.34
//
Query:       MMETSP1137-20121227|8675_1  [L=613]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (613 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        69  (0.0168211); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.16s 00:00:00.54 Elapsed: 00:00:00.88
# Mc/sec: 919.42
//
Query:       MMETSP1137-20121227|8676_1  [L=668]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.012   13.0   0.0       0.02   12.3   0.0    1.3  1  TIGR01250 pro_imino_pep_2: proline-specific peptidases


Domain annotation for each model (and alignments):
>> TIGR01250  pro_imino_pep_2: proline-specific peptidases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0     5e-06      0.02      90     128 ..     210     250 ..     185     261 .. 0.80

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 5e-06
   TIGR01250  90 rekLaldk..fyllgqSwGglLaqeYalkyqqhlkgliiss 128
                 re+ ++ +  f  +g S+Gg+La+ + ++y++ + g++ +s
  MMETSP1137-20121227|8676_1 210 REERGASEsaFIGFGGSYGGMLAAWFRVHYPNAIAGAVAAS 250
                 55555555534459**********************99877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (668 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        87  (0.0212092); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.13s 00:00:00.56 Elapsed: 00:00:00.55
# Mc/sec: 1603.07
//
Query:       MMETSP1137-20121227|8677_1  [L=473]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      2e-08   31.8   9.8      2e-08   31.8   6.8    2.2  2  TIGR00950 2A78: carboxylate/amino acid/amine transporter


Domain annotation for each model (and alignments):
>> TIGR00950  2A78: carboxylate/amino acid/amine transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.8   6.8   4.9e-12     2e-08       2     185 ..     125     316 ..     124     321 .. 0.85
   2 ?    0.6   1.5     0.016        65      61     118 ..     366     429 ..     344     442 .. 0.58

  Alignments for each domain:
  == domain 1    score: 31.8 bits;  conditional E-value: 4.9e-12
   TIGR00950   2 GttgvvikellesqlplyfavlrrlifallllLpllrlr...nslkrllrllllgalqlgvfyvllflavkkltvaiaalllvlaPlyvtllsdllekervrkkkllAavlalaGivlllsdg.......nlsislaGlllgllsgisfAlgtvlakrlvkkeglellqftgfvvlliGallllpfalllgpnl 185
                 G+  vv k  ++   pl+fa+lr l +++lll+  + +      ++r l+l+l   +++++ ++ +++  k   +      + ++P++++l+   l+ er++ +k  +++++l G++ +++ g       +++ + aG +l +l  +   l+ + +k++  k   +   +t++ +   Ga++++ +a++   n 
  MMETSP1137-20121227|8677_1 125 GFGAVVGKLGVARFNPLLFALLRELCAGALLLALARCVDgriSMRRRDLPLFLACGFCIFANQAAFIVGEKLAGAIAGSAWQPTQPVFTLLIALSLGWERPTLLKSTGICVSLCGAAFMVTFGadaatdsSTATFIAGNILFALNCLGTSLYVICSKMALGKGY-PATSVTSW-SYGFGAAMMATTAAAVSSNC 316
                 666778888888899****************999888889987788999999999*************99887666667899************************************9998877666667777788888888888888899999999886655.57777875.9999***9999998877665 PP

  == domain 2    score: 0.6 bits;  conditional E-value: 0.016
   TIGR00950  61 yvllflavkkltvaiaalllvlaPlyvtllsdllekervrk......kkllAavlalaGivlll 118
                 y l++ a    +++ ++   +l+P+ +t+l  ll  +  +       +  l+av+++ G +l l
  MMETSP1137-20121227|8677_1 366 YWLITWANRHAQAGYVLAYCALQPVSATALVVLLVLSGASTslsxpgWNALGAVAVVGGLMLTL 429
                 4445555555777777777777777777777766433222111111244566666666655554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (473 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       118  (0.0287665); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.32u 0.18s 00:00:00.50 Elapsed: 00:00:00.71
# Mc/sec: 879.31
//
Query:       MMETSP1137-20121227|8678_1  [L=391]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (391 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       116  (0.0282789); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.16s 00:00:00.44 Elapsed: 00:00:00.44
# Mc/sec: 1172.90
//
Query:       MMETSP1137-20121227|8679_1  [L=202]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0018   15.9   0.0     0.0025   15.4   0.0    1.2  1  TIGR03137 AhpC: peroxiredoxin


Domain annotation for each model (and alignments):
>> TIGR03137  AhpC: peroxiredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   6.1e-07    0.0025      31     114 ..      53     138 ..      43     144 .. 0.83

  Alignments for each domain:
  == domain 1    score: 15.4 bits;  conditional E-value: 6.1e-07
   TIGR03137  31 Gkwsvlvfypadftfvcpt.eledladkyeelkelgv.evysvstdthfvhkawhdeseaigkikypllgdptkkltrnfdvliee 114
                 G+  +++  p++ft   p  ++    ++ ++lk++gv ev    ++   v  aw+++  + g+    ++gdp+++ltr++d + ++
  MMETSP1137-20121227|8679_1  53 GRNLIILGLPGAFTPTDPMxQVPGYLENADTLKAVGVqEVIVYCVNDGAVMSAWAKDQGVEGHALISFMGDPSGELTRALDLVLDH 138
                 667788888999998888625778889999*****99556666667778999****************************998775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (202 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       123  (0.0299854); expected 82.0 (0.02)
Passed bias filter:                      114  (0.0277913); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.20u 0.16s 00:00:00.36 Elapsed: 00:00:00.35
# Mc/sec: 761.77
//
Query:       MMETSP1137-20121227|8681_1  [L=746]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (746 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        60  (0.014627); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.18s 00:00:00.61 Elapsed: 00:00:00.63
# Mc/sec: 1562.92
//
Query:       MMETSP1137-20121227|8682_1  [L=717]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (717 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       112  (0.0273038); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.14s 00:00:00.58 Elapsed: 00:00:00.61
# Mc/sec: 1551.41
//
Query:       MMETSP1137-20121227|8683_1  [L=233]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (233 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       164  (0.0399805); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.17s 00:00:00.37 Elapsed: 00:00:00.36
# Mc/sec: 854.26
//
Query:       MMETSP1137-20121227|8684_1  [L=855]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.8e-15   53.8   0.0    4.5e-15   53.1   0.0    1.2  1  TIGR02160 PA_CoA_Oxy5: phenylacetate-CoA oxygenase/reductase, PaaK subunit
    1.6e-06   25.3   0.0    4.9e-06   23.7   0.0    1.7  2  TIGR02911 sulfite_red_B: sulfite reductase, subunit B
    2.9e-05   21.0   0.0    0.00011   19.1   0.0    1.8  2  TIGR01941 nqrF: NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit


Domain annotation for each model (and alignments):
>> TIGR02160  PA_CoA_Oxy5: phenylacetate-CoA oxygenase/reductase, PaaK subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.1   0.0   3.3e-18   4.5e-15      19     222 ..     607     837 ..     591     851 .. 0.81

  Alignments for each domain:
  == domain 1    score: 53.1 bits;  conditional E-value: 3.3e-18
   TIGR02160  19 isfevPeelaedyrfepGqhltlkaeldGeelrrsysic...davadgeirvavkki.....eGGlfstwaneeiraGdtlevmaPqGrftskldaer.........................akhyvavaaGsGitPilaivktvlaae.pkstftlvyanrrsasvmfaeeladlkdkypqrfallhvlsreereaellsGrldgeklkalldslievdevdeaflcGPaalvdda 222
                  +f +P + ++      Gqhl lka++dG+ + r+y+      ++ d  i+v   ++      GGl+++++ +++  Gd l    P G++  ++++ +                          k++ ++a GsGitP+l ++ +vla+   + ++ ++yan+++++++ ++ l+ l      r+++   + r + e +  sG ++++ ++   d+l    +    f+cGP ++++ a
  MMETSP1137-20121227|8684_1 607 FRFSLPSP-EHVLGLPTGQHLFLKATIDGKMVMRAYTPMghgAGYVDFVIKVYFANVhpafpAGGLLTQFL-DKMEIGDNLAFKGPMGEYVFNTSVVHprlgiakpadamltfthtrsnskqtYKKLGLIAGGSGITPVLQVATAVLADAsANVEIGILYANQTEKDILCRDMLDALER--DPRVSVWYTVDRPPAEWKYSSGFINEDMVR---DHLPAPSKETVTFMCGPPKMLEYA 837
                 55555555.33455678*******************86511145666677776555433333588888886.899*********************9999********************988888999******************96515678999****************99953..469***********************9887...556666777889********9854 PP

>> TIGR02911  sulfite_red_B: sulfite reductase, subunit B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0      0.35   4.8e+02      67      90 ..     670     693 ..     647     699 .. 0.79
   2 !   23.7   0.0   3.6e-09   4.9e-06      99     211 ..     728     843 ..     719     853 .. 0.81

  Alignments for each domain:
  == domain 1    score: -2.5 bits;  conditional E-value: 0.35
   TIGR02911  67 gkvtdevfelkegdklflrgpygn 90 
                 g +t+ + ++++gd+l ++gp g+
  MMETSP1137-20121227|8684_1 670 GLLTQFLDKMEIGDNLAFKGPMGE 693
                 566777788888888888888885 PP

  == domain 2    score: 23.7 bits;  conditional E-value: 3.6e-09
   TIGR02911  99 dkelvvvaggtgvapvkgvveyfaknskevkeldlivgfktredilfkedlaewke..kinlvltldeaeeddkykvglvtkyiaelkl.kdieevqvivvgppimlkftvkellk 211
                  k+l ++agg+g++pv  v      ++    e+ ++   +t++dil ++ l+  ++  ++++  t+d   ++ ky  g + + +   +l    +e  + + gpp ml+++    lk
  MMETSP1137-20121227|8684_1 728 YKKLGLIAGGSGITPVLQVATAVLADASANVEIGILYANQTEKDILCRDMLDALERdpRVSVWYTVDRPPAEWKYSSGFINEDMVRDHLpAPSKETVTFMCGPPKMLEYACIPNLK 843
                 4778899************9999888888889****************9998877612577788****************987655444144566667899*******99765544 PP

>> TIGR01941  nqrF: NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0      0.14   1.9e+02     239     265 ..     669     695 ..     626     701 .. 0.69
   2 !   19.1   0.0   8.1e-08   0.00011     264     392 ..     722     846 ..     707     853 .. 0.82

  Alignments for each domain:
  == domain 1    score: -1.5 bits;  conditional E-value: 0.14
   TIGR01941 239 pGkmssyifslkpGdkvtvsGpfGeff 265
                  G  + ++ ++  Gd +  +Gp Ge+ 
  MMETSP1137-20121227|8684_1 669 GGLLTQFLDKMEIGDNLAFKGPMGEYV 695
                 456677888888999999999999975 PP

  == domain 2    score: 19.1 bits;  conditional E-value: 8.1e-08
   TIGR01941 264 ffvkdtdaelvfigGGaGmaplrshildllkrlkskrkisfwyGarskrevfyeedfdeleaendnfkyhvalsdplpednwtGytgfihnvlyenylkdhdap.ediefymcGpplm.naaviklledlG 392
                 +  k t ++l  i+GG+G++p+       l    ++ +i + y  +++++++ ++  d le++    +++ +    +p   w+   gfi + +  ++l    ap +++  +mcGpp m + a i  l+++G
  MMETSP1137-20121227|8684_1 722 SNSKQTYKKLGLIAGGSGITPVLQVATAVLADASANVEIGILYANQTEKDILCRDMLDALERDPRVSVWYTV---DRPPAEWKYSSGFINEDMVRDHLP---APsKETVTFMCGPPKMlEYACIPNLKKVG 846
                 566888899999***************************************************999999876...456678999*****9988888774...452356678****9772567777777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (855 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       107  (0.0260848); expected 82.0 (0.02)
Passed bias filter:                      105  (0.0255973); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.55u 0.15s 00:00:00.70 Elapsed: 00:00:00.68
# Mc/sec: 1659.57
//
Query:       MMETSP1137-20121227|8685_1  [L=245]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.1e-51  171.0   0.6    1.3e-48  162.9   0.1    2.1  2  TIGR03654 L6_bact: ribosomal protein L6
    9.7e-12   42.9   0.1    1.9e-11   42.0   0.0    1.4  2  TIGR03653 arch_L6P: archaeal ribosomal protein L6P


Domain annotation for each model (and alignments):
>> TIGR03654  L6_bact: ribosomal protein L6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.7   0.0   0.00057       1.2       1      19 [.      27      45 ..      27      67 .. 0.90
   2 !  162.9   0.1   6.2e-52   1.3e-48      23     174 ..      85     243 ..      80     244 .. 0.91

  Alignments for each domain:
  == domain 1    score: 6.7 bits;  conditional E-value: 0.00057
   TIGR03654  1 srigkkpieipagvevkve 19
                s+ig++pi +p+ v++++e
  MMETSP1137-20121227|8685_1 27 SKIGRMPIPVPSSVNISIE 45
                89**************997 PP

  == domain 2    score: 162.9 bits;  conditional E-value: 6.2e-52
   TIGR03654  23 vtvkgpkgelslklkeevkvkvednkivvkrk..edskeakalhGltralinnmveGvseGfekkLelvGvGYraqlkg.....kklelslGyshpveveipegikvevekqteivvkgidkqkvgqvaaeiralrkpepYkgKGiryadevvrrKegk 174
                  t++gp g+l++ +++  +v+++ + ++v+ +    +k  k+++G+tr++i+n+v Gvs+Gf k++el+GvG+ra+l+      ++l ++lGysh+ ++++p+gi+v v++qt++vv g++k++vg+vaa+ir++ +p+pYkgKG+ry +ev+r K gk
  MMETSP1137-20121227|8685_1  85 ATIEGPLGKLTVPVHSFCDVELDPKVVKVSVQcgGRTKLGKTMWGTTRSMIANAVAGVSQGFVKEMELHGVGFRARLEKdelgaEVLIMRLGYSHECKYTVPDGITVLVPTQTTVVVYGANKKQVGNVAASIRRFHEPDPYKGKGVRYVGEVLRLKPGK 243
                 689*************999999888887766622668889***********************************9986223335689*********************************************************************99 PP

>> TIGR03653  arch_L6P: archaeal ribosomal protein L6P
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0      0.68   1.4e+03       4      16 ..      34      46 ..      32      65 .. 0.80
   2 !   42.0   0.0   9.2e-15   1.9e-11      20     149 ..      86     218 ..      80     225 .. 0.89

  Alignments for each domain:
  == domain 1    score: -3.2 bits;  conditional E-value: 0.68
   TIGR03653  4 ieiPegvsvsiek 16
                i++P+ v++sie 
  MMETSP1137-20121227|8685_1 34 IPVPSSVNISIEP 46
                7889999998874 PP

  == domain 2    score: 42.0 bits;  conditional E-value: 9.2e-15
   TIGR03653  20 kvkgpkgeverel.kypkieisveddkvvletekarkkekalvgtykshiknmikGvtegfeyklkvvYaHFPmqvkve..gnkvvienflGekaprtakilkdvkvkvkge.evvvegidkEkvgqtaanieq 149
                 +++gp g+++  + ++ ++e++ +  kv +++  ++k  k++ gt +s i n + Gv++gf  ++++    F  +++ +  g +v i   lG  ++ + +++++++v v  +  vvv g++k +vg++aa+i +
  MMETSP1137-20121227|8685_1  86 TIEGPLGKLTVPVhSFCDVELDPKVVKVSVQCGGRTKLGKTMWGTTRSMIANAVAGVSQGFVKEMELHGVGFRARLEKDelGAEVLIMR-LGYSHECKYTVPDGITVLVPTQtTVVVYGANKKQVGNVAASIRR 218
                 7889999998876257899999999*********************************************9988876543477777765.8******************88769*****************976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (245 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        86  (0.0209654); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.22u 0.15s 00:00:00.37 Elapsed: 00:00:00.59
# Mc/sec: 548.09
//
Query:       MMETSP1137-20121227|8686_1  [L=74]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (74 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        22  (0.00536324); expected 82.0 (0.02)
Passed bias filter:                       22  (0.00536324); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.13s 00:00:00.24 Elapsed: 00:00:00.34
# Mc/sec: 287.27
//
Query:       MMETSP1137-20121227|8687_1  [L=573]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   2.3e-219  727.0   0.0   2.8e-219  726.7   0.0    1.0  1  TIGR02732 zeta_caro_desat: carotene 7,8-desaturase
    2.2e-79  265.1   0.0    7.1e-53  177.8   0.0    2.0  2  TIGR02731 phytoene_desat: phytoene desaturase
    2.6e-59  199.5   0.0    9.9e-40  135.0   0.0    2.1  2  TIGR03467 HpnE: squalene-associated FAD-dependent desaturase
    4.2e-10   36.7   0.4    1.3e-08   31.9   0.4    2.3  3  TIGR02734 crtI_fam: phytoene desaturase
    1.4e-06   25.2   0.7    6.1e-05   19.8   0.5    2.3  2  TIGR00275 TIGR00275: flavoprotein, HI0933 family
    1.8e-06   24.9   0.1    3.3e-06   24.0   0.1    1.3  1  TIGR01316 gltA: glutamate synthase (NADPH), homotetrameric
    2.1e-06   24.3   0.3      3e-06   23.7   0.2    1.1  1  TIGR03997 mycofact_OYE_2: mycofactocin system FadH/OYE family oxidoreductase 2
    2.8e-06   24.1   0.0    0.00051   16.6   0.0    2.2  2  TIGR02733 desat_CrtD: C-3',4' desaturase CrtD
    8.5e-06   22.7   0.2    1.6e-05   21.8   0.1    1.3  1  TIGR01317 GOGAT_sm_gam: glutamate synthase, NADH/NADPH, small subunit
    2.8e-05   21.2   0.2    4.5e-05   20.5   0.2    1.2  1  TIGR03197 MnmC_Cterm: tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain
    4.3e-05   20.5   0.1    6.8e-05   19.8   0.1    1.3  1  TIGR00031 UDP-GALP_mutase: UDP-galactopyranose mutase
      6e-05   18.4   0.1    9.2e-05   17.8   0.1    1.1  1  TIGR03315 Se_ygfK: putative selenate reductase, YgfK subunit
     0.0001   19.4   0.8    0.00049   17.1   0.4    2.0  2  TIGR02352 thiamin_ThiO: glycine oxidase ThiO
    0.00011   19.8   0.9     0.0002   19.0   0.7    1.3  1  TIGR02032 GG-red-SF: geranylgeranyl reductase family
    0.00025   17.6   0.1    0.00049   16.6   0.1    1.4  1  TIGR00562 proto_IX_ox: protoporphyrinogen oxidase
     0.0006   16.3   0.1    0.00094   15.7   0.1    1.2  1  TIGR01318 gltD_gamma_fam: glutamate synthase, small subunit
     0.0012   15.5   0.5     0.0082   12.7   0.2    2.0  2  TIGR01813 flavo_cyto_c: flavocytochrome c
     0.0014   15.4   0.1     0.0063   13.2   0.1    1.8  2  TIGR02730 carot_isom: carotene isomerase
     0.0029   14.0   0.1      0.004   13.5   0.1    1.1  1  TIGR03996 mycofact_OYE_1: mycofactocin system FadH/OYE family oxidoreductase 1
     0.0033   13.1   0.3      0.005   12.4   0.2    1.2  1  TIGR01372 soxA: sarcosine oxidase, alpha subunit family
     0.0042   14.2   0.2     0.0088   13.1   0.1    1.4  1  TIGR00292 TIGR00292: thiazole biosynthesis enzyme
     0.0044   13.6   0.3       0.02   11.4   0.2    1.9  2  TIGR01350 lipoamide_DH: dihydrolipoyl dehydrogenase
     0.0066   13.1   0.2      0.011   12.4   0.1    1.3  1  TIGR00137 gid_trmFO: tRNA:m(5)U-54 methyltransferase
  ------ inclusion threshold ------
      0.023   11.3   0.1      0.039   10.5   0.1    1.3  1  TIGR03026 NDP-sugDHase: nucleotide sugar dehydrogenase
      0.026   11.0   0.2      0.039   10.4   0.1    1.2  1  TIGR01811 sdhA_Bsu: succinate dehydrogenase or fumarate reductase, flavoprotein subunit
      0.029   10.7   0.2       0.05    9.9   0.1    1.3  1  TIGR01812 sdhA_frdA_Gneg: succinate dehydrogenase or fumarate reductase, flavoprotein subunit
      0.055   10.3   1.4      0.092    9.6   1.0    1.3  1  TIGR03364 HpnW_proposed: FAD dependent oxidoreductase TIGR03364


Domain annotation for each model (and alignments):
>> TIGR02732  zeta_caro_desat: carotene 7,8-desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  726.7   0.0  1.9e-221  2.8e-219       1     473 [.      76     550 ..      76     551 .. 0.95

  Alignments for each domain:
  == domain 1    score: 726.7 bits;  conditional E-value: 1.9e-221
   TIGR02732   1 kvaivgaglaglatavelvdaghevelyesrsflggkvgswvdkdgnhiemglhvffgcyanlfkllkkvgal.dnlllkehthlfvnkggeikeldfrfavgapfnglkafftteqlklvdklrnalalatspivrglvdydgalktirdldkisfaewflskggseaslkrmwdpiayalgfidcenisarcmltifalfaakteasvlrllkgspdkyltkpileyleakgtklylrhkvkeikfekss.dgetrvteliiskaeekkvikadayvaacdvpgikkllpkewrkfeefdkikkleavpvatvqlrydgwvtelkdeekrkqlk......eaagldnllytadadfscfadlalaspedyykegqgsllqlvltpgdpflkksneeivkrvdkqvkelfpsskelkllwssvvklaqslyreapgmdlfrpdqktpianfflagsytkqdyidsmegatlsgrkaaaai 473
                 +v ivgaglag+ +a++l+dagheve++esr f+ggkv sw+dkdgnhiemglhvffgcy+nlf ++ +v a+ +nl+lkehth+f+n+gg ++eldfrf +gap+ gl+af  t ql  +dkl+nalal+tspivr+lvd++g + ++r+ld+i+f+ewf  kggs++s++rmwdpiayalgf+dc++isarcmltif+lfa +teasvlr+l+gsp++yl++pi +ylea+g k++l+ +v e+ +e +     trv  + + +  e+k  + da  aacdvpgikkllp+ +rk+ +fdki++l++vp+atvqlr++gwvte++de++ k++       + ag+dnlly+ada+fscfadlal sp +yykeg+gsl+q v+    + +++ +e+iv+  ++q+++lfpss++l+ +wssvvkl+qslyre pg+d frp+q+tp++nfflagsyt qdyidsmegat sg  aa+ +
  MMETSP1137-20121227|8687_1  76 RVGIVGAGLAGMVAAMDLADAGHEVEIFESRRFVGGKVSSWQDKDGNHIEMGLHVFFGCYYNLFGIMRRVDAFeKNLRLKEHTHTFINNGGGTGELDFRFPIGAPVSGLQAFARTAQLGPYDKLANALALGTSPIVRALVDFNGGMDMVRELDDITFTEWFTRKGGSRGSIDRMWDPIAYALGFLDCDHISARCMLTIFMLFAIRTEASVLRMLEGSPQTYLHDPIINYLEARGVKIHLNARVSELVHEVDEfGVPTRVNAIRVGD--ETK--EYDAVXAACDVPGIKKLLPESFRKVPMFDKIYNLDCVPIATVQLRFNGWVTEMHDEARMKDVSgdqsdgRGAGIDNLLYSADAEFSCFADLALVSPGEYYKEGEGSLMQAVMD--SRAFNRPQEQIVADCLEQMHKLFPSSRQLECTWSSVVKLGQSLYREKPGQDKFRPNQATPVDNFFLAGSYTYQDYIDSMEGATKSGIMAADEV 550
                 799********************************************************************96379**************************************************************************************************************************************************************************99876414456676666544..444..57999****************************************************999874332333679***************************************96..577899**********************************************************************************99865 PP

>> TIGR02731  phytoene_desat: phytoene desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  177.8   0.0   4.6e-55   7.1e-53       1     315 [.      76     396 ..      76     403 .. 0.88
   2 !   85.5   0.0   4.5e-27   6.9e-25     314     452 ..     416     550 ..     410     551 .. 0.89

  Alignments for each domain:
  == domain 1    score: 177.8 bits;  conditional E-value: 4.6e-55
   TIGR02731   1 rvaiagaglaglsaakyladaghtpivleardvlggkvaawkdedgdwyetglhiffgaypnllqllkeln.iedrlqwkehslifaqpdk.pgelsrfdvpdlpaplnvvlailrnndmltweekik..falg...llpaiv...rgqkyveeldkltlsewlkkqgvpervndevfiaaskalnfidpdelsatvvltalnrflqerygsklafldgapperlcqpivdyitsrggevrlnarlkeivlnedgsvkafaladlegkesfevtadayvsalavdilklllpkpwkeleffkkleglegvpvinvhlwfdrkltt 315
                 rv i gaglag+ aa  ladagh   ++e+r  +ggkv++w+d+dg+ +e glh+ffg y nl  +++ ++  e  l+ keh+  f  +    gel  f +p + ap+ ++ a  r  ++  ++ k+   +alg   +++a+v    g + v eld++t++ew+ ++g +    d ++  ++ al f+d d +sa+++lt +  f      s l +l+g+p   l +pi++y+++rg +++lnar+ e+v + d+      ++  +   +++ + da  +a  v  +k+llp+ ++++++f k+ +l+ vp+  v+l f+  +t+
  MMETSP1137-20121227|8687_1  76 RVGIVGAGLAGMVAAMDLADAGHEVEIFESRRFVGGKVSSWQDKDGNHIEMGLHVFFGCYYNLFGIMRRVDaFEKNLRLKEHTHTFINNGGgTGEL-DFRFP-IGAPVSGLQAFARTAQLGPYD-KLAnaLALGtspIVRALVdfnGGMDMVRELDDITFTEWFTRKGGSRGSIDRMWDPIAYALGFLDCDHISARCMLTIFMLFAIRTEASVLRMLEGSPQTYLHDPIINYLEARGVKIHLNARVSELVHEVDEFGVPTRVNAIR-VGDETKEYDAVXAACDVPGIKKLLPESFRKVPMFDKIYNLDCVPIATVQLRFNGWVTE 396
                 799****************************************************************999636889******99996554303443.46676.9************99877765.5551255663334667774434899******************999999****************************************************************************9999876666666655.445566889*****************************************99877665 PP

  == domain 2    score: 85.5 bits;  conditional E-value: 4.5e-27
   TIGR02731 314 ttvdhllfsrsellsvyadmsetc..keyadpdksmlelvlapakdwigrsdeeiieatlkeleklfpdelkadekakllkskvvktprsvykatpgreklrpaqktpienfflagdytkqkylasmegavlsgklaaqai 452
                 + +d ll+s    +s +ad++       y++ + s+++ v+       +r++e+i+   l++++klfp+  +     +   s vvk  +s+y+  pg++k+rp+q+tp++nfflag+yt q y+ smega  sg +aa+++
  MMETSP1137-20121227|8687_1 416 AGIDNLLYSADAEFSCFADLALVSpgEYYKEGEGSLMQAVMDSR--AFNRPQEQIVADCLEQMHKLFPSSRQ----LECTWSSVVKLGQSLYREKPGQDKFRPNQATPVDNFFLAGSYTYQDYIDSMEGATKSGIMAADEV 550
                 579****************9976521446677889999998654..589*******************8765....678899*******************************************************9987 PP

>> TIGR03467  HpnE: squalene-associated FAD-dependent desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  135.0   0.0   6.5e-42   9.9e-40       1     299 [.      77     395 ..      77     410 .. 0.87
   2 !   62.6   0.0   6.1e-20   9.3e-18     339     429 ..     461     551 ..     441     552 .. 0.92

  Alignments for each domain:
  == domain 1    score: 135.0 bits;  conditional E-value: 6.5e-42
   TIGR03467   1 vvvvGgGlAGLaAAveLaraGvrvtllEarrqlGGRarsfedgslgetiDngqHvllgaytellallarvgaedr.lqlerleltfldpegresrLrl.srlpaPlhlakgllrakglsladklalarllla..lkrerl.........raaadetvaewLkakgqserlierlwepllvsaLNedperasaklaakVlrdsllakreasdlllprvdLselfvepaarylesrggevrlgtrvreleasaggiralve.....aaeetlaadavvlAvpperaasllpe....edlaaklaalesspIttvhlrldrevk 299
                 v +vG+GlAG+ AA+ La+aG +v+++E+rr +GG+++s +d++ +  i  g Hv  g+y +l+  ++rv+a ++ l+l++   tf++++g++ +L+   ++ aP   +++++r  +l++ dkla a +l    ++r  +         r+++d t++ew ++kg s+  i+r+w+p++ +    d +++sa+ +  ++   ++ + eas l++ +    + + +p+++yle+rg++++l++rv+el  + +++ + ++     +++et ++dav  A     +++llpe      +++k+ +l+  pI+tv lr++  v+
  MMETSP1137-20121227|8687_1  77 VGIVGAGLAGMVAAMDLADAGHEVEIFESRRFVGGKVSSWQDKDGN-HIEMGLHVFFGCYYNLFGIMRRVDAFEKnLRLKEHTHTFINNGGGTGELDFrFPIGAPVSGLQAFARTAQLGPYDKLANALALGTspIVRALVdfnggmdmvRELDDITFTEWFTRKGGSRGSIDRMWDPIAYALGFLDCDHISARCMLTIFM-LFAIRTEASVLRMLEGSPQTYLHDPIINYLEARGVKIHLNARVSELVHEVDEFGVPTRvnairVGDETKEYDAVXAACDVPGIKKLLPEsfrkVPMFDKIYNLDCVPIATVQLRFNGWVT 395
                 679************************************9999988.9***********************966515559999*********99**9835779********************99776664311222211222233456******************************999999************996.79***********99999999*************************9888777654332244489*************************999999*******************98773 PP

  == domain 2    score: 62.6 bits;  conditional E-value: 6.1e-20
   TIGR03467 339 edlereeladrivaelrrllpkvaeakllkakvikekrAtFaatpglerlRPgartplpnlfLAGDwtatgyPATlEgAvrSGvqAAeavl 429
                  ++++e++++  ++++++l+p  ++ + +++ v+k  +  +  +pg++  RP+++tp+ n fLAG +t  +y   +EgA++SG  AA+ v+
  MMETSP1137-20121227|8687_1 461 FNRPQEQIVADCLEQMHKLFPSSRQLECTWSSVVKLGQSLYREKPGQDKFRPNQATPVDNFFLAGSYTYQDYIDSMEGATKSGIMAADEVI 551
                 45799***********************************************************************************997 PP

>> TIGR02734  crtI_fam: phytoene desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.9   0.4   8.3e-11   1.3e-08       2      50 ..      78     127 ..      77     133 .. 0.89
   2 ?    1.9   0.0       0.1        15     224     283 ..     301     364 ..     294     382 .. 0.81
   3 ?   -3.4   0.0       4.1   6.2e+02     449     468 ..     510     528 ..     508     529 .. 0.83

  Alignments for each domain:
  == domain 1    score: 31.9 bits;  conditional E-value: 8.3e-11
   TIGR02734   2 vViGaGlgGLAlAirLaaaGievtvlekrdkpGGRagvleed.GfrfDtG 50 
                  ++GaGl+G+ +A+ La aG+ev+++e r  +GG+ ++++++ G ++ +G
  MMETSP1137-20121227|8687_1  78 GIVGAGLAGMVAAMDLADAGHEVEIFESRRFVGGKVSSWQDKdGNHIEMG 127
                 58*************************************97648777666 PP

  == domain 2    score: 1.9 bits;  conditional E-value: 0.1
   TIGR02734 224 laklaedlggelrlnaeveeieteg......erataveledgerleadavvsnaDlvhtykkllre 283
                 + +  e  g++++lna+v+e+ +e       +r++a++ +d e+ e dav  ++D+   +k ll+e
  MMETSP1137-20121227|8687_1 301 IINYLEARGVKIHLNARVSELVHEVdefgvpTRVNAIRVGD-ETKEYDAVXAACDVPGIKK-LLPE 364
                 5667788899**********999888899988989999888.7889*********997654.5554 PP

  == domain 3    score: -3.4 bits;  conditional E-value: 4.1
   TIGR02734 449 fRprnrsekvdnlylvGagT 468
                 fRp n++  vdn++l+G+ T
  MMETSP1137-20121227|8687_1 510 FRP-NQATPVDNFFLAGSYT 528
                 565.78899********877 PP

>> TIGR00275  TIGR00275: flavoprotein, HI0933 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   0.5     4e-07   6.1e-05       3      37 ..      79     113 ..      77     115 .. 0.95
   2 ?    2.9   0.0     0.056       8.6     113     147 ..     302     336 ..     295     342 .. 0.86

  Alignments for each domain:
  == domain 1    score: 19.8 bits;  conditional E-value: 4e-07
   TIGR00275   3 iiGgGaaGlmaAitaaeegakVlllEknkkigkKl 37 
                 i+G+G aG++aA+ +a +g++V ++E+++ +g K+
  MMETSP1137-20121227|8687_1  79 IVGAGLAGMVAAMDLADAGHEVEIFESRRFVGGKV 113
                 9*******************************998 PP

  == domain 2    score: 2.9 bits;  conditional E-value: 0.056
   TIGR00275 113 lkelkelgvevlteskvksikkeeekfevetekke 147
                  + l+  gv+++++++v+++ +e ++f+v t+ + 
  MMETSP1137-20121227|8687_1 302 INYLEARGVKIHLNARVSELVHEVDEFGVPTRVNA 336
                 578999**************9999****9996554 PP

>> TIGR01316  gltA: glutamate synthase (NADPH), homotetrameric
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.0   0.1   2.1e-08   3.3e-06     130     171 ..      71     112 ..      57     116 .. 0.89

  Alignments for each domain:
  == domain 1    score: 24.0 bits;  conditional E-value: 2.1e-08
   TIGR01316 130 pstkkkvaviGaGpaGlavaselakkGhevtvfealhkpGGv 171
                   +k +v ++GaG aG+  a +la +Ghev++fe+ +  GG 
  MMETSP1137-20121227|8687_1  71 SKSKLRVGIVGAGLAGMVAAMDLADAGHEVEIFESRRFVGGK 112
                 67899*****************************98888885 PP

>> TIGR03997  mycofact_OYE_2: mycofactocin system FadH/OYE family oxidoreductase 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.7   0.2     2e-08     3e-06     377     419 ..      72     114 ..      56     123 .. 0.87

  Alignments for each domain:
  == domain 1    score: 23.7 bits;  conditional E-value: 2e-08
   TIGR03997 377 rrrkkvlvvGgGPaGleaaataarrGhrvtllereeelGGqvk 419
                 + + +v +vG+G aG+ aa+  a  Gh+v ++e  + +GG+v 
  MMETSP1137-20121227|8687_1  72 KSKLRVGIVGAGLAGMVAAMDLADAGHEVEIFESRRFVGGKVS 114
                 44569************************************97 PP

>> TIGR02733  desat_CrtD: C-3',4' desaturase CrtD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0   3.3e-06   0.00051       4      44 ..      77     117 ..      74     124 .. 0.91
   2 ?    5.1   0.0     0.011       1.7     222     289 ..     284     352 ..     269     384 .. 0.74

  Alignments for each domain:
  == domain 1    score: 16.6 bits;  conditional E-value: 3.3e-06
   TIGR02733   4 vvviGaGiaGltaaallakrGlevtlleaaaqvGGCastfk 44 
                 v ++GaG+aG+ aa  la  G ev+++e+   vGG  s ++
  MMETSP1137-20121227|8687_1  77 VGIVGAGLAGMVAAMDLADAGHEVEIFESRRFVGGKVSSWQ 117
                 679********************************999877 PP

  == domain 2    score: 5.1 bits;  conditional E-value: 0.011
   TIGR02733 222 rGlyhlegsmqv.lsdrlvealkkdggelllgqrveaietkeekaeakvvvdsrkkekeevkaddvvan 289
                   l  legs q+ l d + + l+ +g+++ l+ rv+++ ++ ++  + + v+  +  +e+ + d v a+
  MMETSP1137-20121227|8687_1 284 SVLRMLEGSPQTyLHDPIINYLEARGVKIHLNARVSELVHEVDEFGVPTRVNAIRVGDETKEYDAVXAA 352
                 5567799**997699***********************9998887766655554444444444444444 PP

>> TIGR01317  GOGAT_sm_gam: glutamate synthase, NADH/NADPH, small subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.8   0.1     1e-07   1.6e-05     142     182 ..      73     113 ..      61     116 .. 0.90

  Alignments for each domain:
  == domain 1    score: 21.8 bits;  conditional E-value: 1e-07
   TIGR01317 142 tGkkvavvGsGPaGlaaadqlnraGhtvtvferedrvGGll 182
                 +  +v++vG+G aG+ aa  l+ aGh+v +fe    vGG +
  MMETSP1137-20121227|8687_1  73 SKLRVGIVGAGLAGMVAAMDLADAGHEVEIFESRRFVGGKV 113
                 4568*****************************99999965 PP

>> TIGR03197  MnmC_Cterm: tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   0.2   2.9e-07   4.5e-05       2      39 ..      77     114 ..      76     117 .. 0.88

  Alignments for each domain:
  == domain 1    score: 20.5 bits;  conditional E-value: 2.9e-07
   TIGR03197   2 vavIGaGiAgaalalsLarrGvqvtllekdeklaqgAS 39 
                 v ++GaG+Ag+++a  La +G++v+++e++  ++ + S
  MMETSP1137-20121227|8687_1  77 VGIVGAGLAGMVAAMDLADAGHEVEIFESRRFVGGKVS 114
                 679*************************9987776666 PP

>> TIGR00031  UDP-GALP_mutase: UDP-galactopyranose mutase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   0.1   4.5e-07   6.8e-05       6      59 ..      79     131 ..      74     163 .. 0.84

  Alignments for each domain:
  == domain 1    score: 19.8 bits;  conditional E-value: 4.5e-07
   TIGR00031   6 ivGaGlsGivlaeilaklnkrvlvvekrnhiGGncydevdekgllvhkyGphif 59 
                 ivGaGl+G+v a  la+ +++v + e r+ +GG +   +d++g  + + G h+f
  MMETSP1137-20121227|8687_1  79 IVGAGLAGMVAAMDLADAGHEVEIFESRRFVGGKVSSWQDKDGNHI-EMGLHVF 131
                 9********************************9877666654443.4566766 PP

>> TIGR03315  Se_ygfK: putative selenate reductase, YgfK subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.1   6.1e-07   9.2e-05     530     577 ..      67     114 ..      48     116 .. 0.85

  Alignments for each domain:
  == domain 1    score: 17.8 bits;  conditional E-value: 6.1e-07
   TIGR03315 530 kpqlksekhkvaviGaGPaGlsagyflaraGlpvtvfekkekagGvvk 577
                    ++++k +v ++GaG aG+ a++ la aG++v +fe +  +gG v+
  MMETSP1137-20121227|8687_1  67 PGVVSKSKLRVGIVGAGLAGMVAAMDLADAGHEVEIFESRRFVGGKVS 114
                 455678899********************************9999886 PP

>> TIGR02352  thiamin_ThiO: glycine oxidase ThiO
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.4   3.2e-06   0.00049       1      34 [.      77     111 ..      77     117 .. 0.85
   2 ?   -0.2   0.0      0.58        89     231     292 ..     312     374 ..     300     381 .. 0.80

  Alignments for each domain:
  == domain 1    score: 17.1 bits;  conditional E-value: 3.2e-06
   TIGR02352   1 vlviGgGviGlsvAveLakrghkvtllekd.evgs 34 
                 v ++G+G+ G++ A+ La++gh+v+++e++  vg+
  MMETSP1137-20121227|8687_1  77 VGIVGAGLAGMVAAMDLADAGHEVEIFESRrFVGG 111
                 679*************************9944444 PP

  == domain 2    score: -0.2 bits;  conditional E-value: 0.58
   TIGR02352 231 kllnrpvravvyqrqvYivPredgrlvvGAtsee.sgfdttvtlegvkeLledaievlPalke 292
                  +ln  v ++v + + + vP + + + vG  ++e +    + ++ g+k+Ll +  + +P +  
  MMETSP1137-20121227|8687_1 312 IHLNARVSELVHEVDEFGVPTRVNAIRVGDETKEyDAVXAACDVPGIKKLLPESFRKVPMFDK 374
                 5677888888888899999999999999975555155678899***********999999875 PP

>> TIGR02032  GG-red-SF: geranylgeranyl reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.7   1.3e-06    0.0002       5      37 ..      79     111 ..      77     114 .. 0.93

  Alignments for each domain:
  == domain 1    score: 19.0 bits;  conditional E-value: 1.3e-06
   TIGR02032   5 vvGaGpaGssaAlrlakkGlrVlllekkelpre 37 
                 +vGaG aG  aA +la++G++V ++e +++++ 
  MMETSP1137-20121227|8687_1  79 IVGAGLAGMVAAMDLADAGHEVEIFESRRFVGG 111
                 9****************************9875 PP

>> TIGR00562  proto_IX_ox: protoporphyrinogen oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.1   3.2e-06   0.00049       4      60 ..      76     131 ..      73     145 .. 0.89

  Alignments for each domain:
  == domain 1    score: 16.6 bits;  conditional E-value: 3.2e-06
   TIGR00562   4 kvvvvGgGisGLciayalekerpdvelvlvEakdRvGGkiy.TrkesGyllEkGprtl 60 
                  v +vG+G++G+ +a  l+    + e+ ++E++  vGGk+   ++++G  +E G + +
  MMETSP1137-20121227|8687_1  76 RVGIVGAGLAGMVAAMDLADA--GHEVEIFESRRFVGGKVSsWQDKDGNHIEMGLHVF 131
                 689****************99..889999***********967899**9999997665 PP

>> TIGR01318  gltD_gamma_fam: glutamate synthase, small subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.1   6.2e-06   0.00094     131     179 ..      64     112 ..      33     115 .. 0.81

  Alignments for each domain:
  == domain 1    score: 15.7 bits;  conditional E-value: 6.2e-06
   TIGR01318 131 rpdlskvkktgkrvaviGaGpaGlacadvlaraGvkvvvfdrypeiGGl 179
                 +     v k++ rv ++GaG aG+  a  la aG +v +f+    +GG 
  MMETSP1137-20121227|8687_1  64 QQGPGVVSKSKLRVGIVGAGLAGMVAAMDLADAGHEVEIFESRRFVGGK 112
                 444456888899*****************************99999995 PP

>> TIGR01813  flavo_cyto_c: flavocytochrome c
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.7   0.2   5.4e-05    0.0082       3      38 ..      78     112 ..      76     116 .. 0.93
   2 ?    0.4   0.0       0.3        45     134     161 ..     299     326 ..     289     352 .. 0.75

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 5.4e-05
   TIGR01813   3 vvvGsGlAGlsaaleakkaglaevvvleKapviGGN 38 
                  +vG+GlAG+ aa+++ +ag +ev + e   ++GG 
  MMETSP1137-20121227|8687_1  78 GIVGAGLAGMVAAMDLADAG-HEVEIFESRRFVGGK 112
                 59******************.*************95 PP

  == domain 2    score: 0.4 bits;  conditional E-value: 0.3
   TIGR01813 134 qklskkakkegvelrlnskvedlikddq 161
                 +++ ++++ +gv+++ln++v +l+++ +
  MMETSP1137-20121227|8687_1 299 DPIINYLEARGVKIHLNARVSELVHEVD 326
                 5677899999*************98654 PP

>> TIGR02730  carot_isom: carotene isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   0.1   4.2e-05    0.0063       5      59 ..      79     134 ..      76     149 .. 0.87
   2 ?   -0.6   0.0      0.65        99     233     261 ..     299     327 ..     266     370 .. 0.83

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 4.2e-05
   TIGR02730   5 vigsgigglvtatqlaakgakvlvlekylipgg.sagyferegykfdvgaslifgf 59 
                 ++g+g+ g+v+a +la  g  v ++e+    gg  + + +++g ++++g  ++fg 
  MMETSP1137-20121227|8687_1  79 IVGAGLAGMVAAMDLADAGHEVEIFESRRFVGGkVSSWQDKDGNHIEMGLHVFFGC 134
                 79***********************9876666515777899*************95 PP

  == domain 2    score: -0.6 bits;  conditional E-value: 0.65
   TIGR02730 233 eklvkglekaggkirykarvtkiilendk 261
                 + +++ le  g ki+ +arv++++ e d+
  MMETSP1137-20121227|8687_1 299 DPIINYLEARGVKIHLNARVSELVHEVDE 327
                 5678899****************999775 PP

>> TIGR03996  mycofact_OYE_1: mycofactocin system FadH/OYE family oxidoreductase 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   0.1   2.7e-05     0.004     373     422 ..      75     124 ..      56     188 .. 0.85

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 2.7e-05
   TIGR03996 373 gdvlvvGGGpaGleaarvlavrGhrvtlaeasarlGGmvriaargdGlsr 422
                   v +vG G aG+ aa  la +Gh+v + e+   +GG v      dG + 
  MMETSP1137-20121227|8687_1  75 LRVGIVGAGLAGMVAAMDLADAGHEVEIFESRRFVGGKVSSWQDKDGNHI 124
                 56779**********************************99998888775 PP

>> TIGR01372  soxA: sarcosine oxidase, alpha subunit family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.4   0.2   3.3e-05     0.005     171     211 ..      77     117 ..      63     125 .. 0.89

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 3.3e-05
   TIGR01372 171 vLvvGaGpaGLaaAraAaraGarvilvdeqaeaGGsllsea 211
                 v +vGaG aG+ aA   a+aG  v + + ++ +GG++ s +
  MMETSP1137-20121227|8687_1  77 VGIVGAGLAGMVAAMDLADAGHEVEIFESRRFVGGKVSSWQ 117
                 679********************************987654 PP

>> TIGR00292  TIGR00292: thiazole biosynthesis enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.1   0.1   5.8e-05    0.0088      23      59 ..      76     112 ..      57     118 .. 0.89

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 5.8e-05
   TIGR00292  23 DviivGaGpsGLtaayylakeglkvvvlerklaiGGG 59 
                  v ivGaG +G+ aa  la +g  v ++e++  +GG 
  MMETSP1137-20121227|8687_1  76 RVGIVGAGLAGMVAAMDLADAGHEVEIFESRRFVGGK 112
                 578****************************999985 PP

>> TIGR01350  lipoamide_DH: dihydrolipoyl dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.4   0.2   0.00013      0.02       4      37 ..      77     111 ..      74     114 .. 0.88
   2 ?   -0.7   0.0      0.61        93     218     245 ..     302     329 ..     288     352 .. 0.78

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 0.00013
   TIGR01350   4 vvviGgGpgGYvaAiraaqlglkvalvek.eklGG 37 
                 v ++G+G +G vaA+  a +g +v + e  + +GG
  MMETSP1137-20121227|8687_1  77 VGIVGAGLAGMVAAMDLADAGHEVEIFESrRFVGG 111
                 669*************************9566777 PP

  == domain 2    score: -0.7 bits;  conditional E-value: 0.61
   TIGR01350 218 kkklkkkgvkiltnakvtevekeedevv 245
                  + l+++gvki+ na+v+e+ +e de+ 
  MMETSP1137-20121227|8687_1 302 INYLEARGVKIHLNARVSELVHEVDEFG 329
                 567999***********98877766654 PP

>> TIGR00137  gid_trmFO: tRNA:m(5)U-54 methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.4   0.1   7.3e-05     0.011       3      32 ..      77     106 ..      75     113 .. 0.93

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 7.3e-05
   TIGR00137   3 vnviGgGlaGseaawqlakeGvrvilyemr 32 
                 v ++G+GlaG  aa  la++G++v ++e r
  MMETSP1137-20121227|8687_1  77 VGIVGAGLAGMVAAMDLADAGHEVEIFESR 106
                 789***********************9987 PP

>> TIGR03026  NDP-sugDHase: nucleotide sugar dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.1   0.00026     0.039       2      32 ..      76     106 ..      75     129 .. 0.90

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 0.00026
   TIGR03026   2 kiavvGlGYvGlplaallaekgheVvgvDid 32 
                 ++ +vG+G  G++ a+ la++gheV  ++ +
  MMETSP1137-20121227|8687_1  76 RVGIVGAGLAGMVAAMDLADAGHEVEIFESR 106
                 689**********************998865 PP

>> TIGR01811  sdhA_Bsu: succinate dehydrogenase or fumarate reductase, flavoprotein subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.1   0.00026     0.039       3      28 ..      79     104 ..      77     109 .. 0.92

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 0.00026
   TIGR01811   3 vvGtGlaGlsaaiklaelGydvklfs 28 
                 +vG+GlaG++aa+ la++G +v+ f 
  MMETSP1137-20121227|8687_1  79 IVGAGLAGMVAAMDLADAGHEVEIFE 104
                 7**********************995 PP

>> TIGR01812  sdhA_frdA_Gneg: succinate dehydrogenase or fumarate reductase, flavoprotein subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.1   0.00033      0.05       4      27 ..      79     102 ..      76     108 .. 0.89

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 0.00033
   TIGR01812   4 ivGaGlAGlraAveaakkglkvav 27 
                 ivGaGlAG+ aA+++a +g++v +
  MMETSP1137-20121227|8687_1  79 IVGAGLAGMVAAMDLADAGHEVEI 102
                 9*****************998865 PP

>> TIGR03364  HpnW_proposed: FAD dependent oxidoreductase TIGR03364
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   1.0    0.0006     0.092       3      32 ..      77     106 ..      75     113 .. 0.89

  Alignments for each domain:
  == domain 1    score: 9.6 bits;  conditional E-value: 0.0006
   TIGR03364   3 vvvvGaGivGlahAlaaarrGlkVtviers 32 
                 v +vGaG+ G+  A+  a  G++V ++e  
  MMETSP1137-20121227|8687_1  77 VGIVGAGLAGMVAAMDLADAGHEVEIFESR 106
                 77*************************965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (573 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       157  (0.038274); expected 82.0 (0.02)
Passed bias filter:                      143  (0.034861); expected 82.0 (0.02)
Passed Vit filter:                        56  (0.0136519); expected 4.1 (0.001)
Passed Fwd filter:                        27  (0.00658216); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              27  [number of targets reported over threshold]
# CPU time: 0.64u 0.18s 00:00:00.82 Elapsed: 00:00:00.88
# Mc/sec: 859.43
//
Query:       MMETSP1137-20121227|8688_1  [L=407]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (407 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       161  (0.0392491); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.13s 00:00:00.47 Elapsed: 00:00:00.52
# Mc/sec: 1033.07
//
Query:       MMETSP1137-20121227|8689_1  [L=192]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0002   19.5   1.9     0.0013   16.9   0.1    2.4  2  TIGR02811 formate_TAT: formate dehydrogenase region TAT target
  ------ inclusion threshold ------
        1.8    7.0   7.6       0.75    8.2   0.8    2.8  2  TIGR01409 TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence


Domain annotation for each model (and alignments):
>> TIGR02811  formate_TAT: formate dehydrogenase region TAT target
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.1   6.4e-07    0.0013       9      35 ..      29      55 ..      26      78 .. 0.81
   2 ?    1.5   0.1      0.04        83      13      32 ..     164     183 ..     162     186 .. 0.78

  Alignments for each domain:
  == domain 1    score: 16.9 bits;  conditional E-value: 6.4e-07
   TIGR02811  9 lsRRdLLkglavgaaagavaaatgrva 35
                ++RR+LL  l+++a+a+ va + + +a
  MMETSP1137-20121227|8689_1 29 PARRQLLLTLGTAAVAACVAPGPSHAA 55
                79*****************98888766 PP

  == domain 2    score: 1.5 bits;  conditional E-value: 0.04
   TIGR02811  13 dLLkglavgaaagavaaatg 32 
                 +L+ +l ++a agav+ a g
  MMETSP1137-20121227|8689_1 164 QLVPKLFTAAYAGAVVVAFG 183
                 56777889999999998765 PP

>> TIGR01409  TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   0.8   0.00037      0.75       3      29 .]      31      54 ..      31      54 .. 0.70
   2 ?    1.2   0.5      0.06   1.2e+02      13      20 ..     175     182 ..     170     189 .. 0.46

  Alignments for each domain:
  == domain 1    score: 8.2 bits;  conditional E-value: 0.00037
   TIGR01409  3 RRdFLkaaaaagaaaglglllpsparA 29
                RR+ L ++++a++aa ++   p+p++A
  MMETSP1137-20121227|8689_1 31 RRQLLLTLGTAAVAACVA---PGPSHA 54
                888888886666666664...689988 PP

  == domain 2    score: 1.2 bits;  conditional E-value: 0.06
   TIGR01409  13 agaaaglg 20 
                 aga+++++
  MMETSP1137-20121227|8689_1 175 AGAVVVAF 182
                 33333332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (192 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        97  (0.023647); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.21u 0.15s 00:00:00.36 Elapsed: 00:00:00.36
# Mc/sec: 703.94
//
Query:       MMETSP1137-20121227|8690_1  [L=259]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (259 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        75  (0.0182838); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.13s 00:00:00.34 Elapsed: 00:00:00.34
# Mc/sec: 1005.45
//
Query:       MMETSP1137-20121227|8692_1  [L=463]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.3e-63  212.9   0.6    1.3e-63  212.9   0.4    1.4  2  TIGR02992 ectoine_eutC: ectoine utilization protein EutC
    2.6e-50  169.2   0.4    3.5e-50  168.8   0.2    1.1  1  TIGR02371 ala_DH_arch: alanine dehydrogenase
    1.5e-23   81.2   0.0    3.7e-23   79.9   0.0    1.7  2  TIGR03944 dehyd_SbnB_fam: 2,3-diaminopropionate biosynthesis protein SbnB


Domain annotation for each model (and alignments):
>> TIGR02992  ectoine_eutC: ectoine utilization protein EutC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.1   0.2         1   1.4e+03     100     127 ..      12      40 ..      10      55 .. 0.69
   2 !  212.9   0.4   9.7e-67   1.3e-63      17     314 ..     160     458 ..     152     462 .. 0.95

  Alignments for each domain:
  == domain 1    score: -4.1 bits;  conditional E-value: 1
   TIGR02992 100 allldnGyltdvrtaaaGa.vaarrlare 127
                 a+l+  G+ ++ r+  + a vaa  la +
  MMETSP1137-20121227|8692_1  12 AMLVRRGFSSATRSVQSSAlVAAPSLAMN 40 
                 78888888888888766654677777755 PP

  == domain 2    score: 212.9 bits;  conditional E-value: 9.7e-67
   TIGR02992  17 ldavdvveeafaalatekvvmppilrldipehr....Gevdvktayvpgldgfaikvsp.GffdnpklGlpslnGlmvllssrtGlleallldnGyltdvrtaaaGavaarrlaredasevailGaGvqarlqlealtlvrdiksariwardaakaealalslaselGldvtaatdvrealsgadiivtttpaetpvlkaewlepGqhvtamGsdaehkneidpavlakadlyvadrlsqtallGelhhaiaaglvaaeqefaelGqviaGkkvGrrsddeitladltGtGvqdtaiatlafa 314
                 +da++++eeaf+ la++kv +p  ++++i e      G+  +k  yv g ++f++k++   f++n + Glp   G+ v++ +  G   a++ +n yltd+rt aaGav+ ++l++   ++v  +G G  a++  +  + v++  + +++    a ae+ a+++++elG++ t+a++ +e  + +di+ t tp ++ vl+++wl+p   ++a Gsd+  k+ei  +vl  ++  v d ++q++++Gel++a++ag ++++ ++aelG+++ G+k+Gr+  +e++++dltGtG qd+ai ++a  
  MMETSP1137-20121227|8692_1 160 VDAIEAIEEAFSKLAQGKVDVPFPMHIGIDETAeagpGDCHIKGGYVSGTKTFTVKLACvSFYKNLEKGLPPGGGIFVVMDATNGAPLAIMQENRYLTDLRTGAAGAVSVKYLTKPXHENVGFIGCGAIAKVMARGTAAVKPGFKGHVFG--FAGAEQFAAEMSEELGVEFTVAKSAQELCARSDIVFTQTPGSETVLEKKWLRPHATIIASGSDQPTKQEIPVDVLKSSK-XVCDLVKQVSKVGELRSALKAGAMKESDVYAELGEIVNGTKPGRTG-NELIVVDLTGTGAQDAAIGQVAWD 458
                 69***************************9975444599*****************98538************************************************************************************99996..6899******************************************************************999998777.9******************************************986.68999**************99976 PP

>> TIGR02371  ala_DH_arch: alanine dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  168.8   0.2   2.6e-53   3.5e-50      10     311 ..     153     458 ..     148     462 .. 0.90

  Alignments for each domain:
  == domain 1    score: 168.8 bits;  conditional E-value: 2.6e-53
   TIGR02371  10 veslvdmdealkaveeafrqealGkvqmppkvylff....evynGdlrvmpayleelelaGvkivnv.hpgnpdrnlptvmaliilvspetGfpvavmd.gtyltdlrtGaaGGvaakylarkdssvlGliGaGrqaytqlealsrvfdleevkvysrtkeaaekfvkeas.dyevpvsaaeepaekvsdcdilvtttpsrkpvvkaewveeGthinaiGadapGkqeldpeilkkakivvddleqakhsGeinvpvskgvisvedvhaslGevivGlkeGrtseeeitifdstGlaiqdvatakvvye 311
                 v++ v + +a++a+eeaf + a Gkv +p  +++      e   Gd  +   y+ + +   vk+  v    n +++lp    ++++++   G+p+a+m+   yltdlrtGaaG v++kyl++   + +G+iG+G  a++     + v      k        ae+f+ e+s + +v  ++a+ ++e  ++ di+ t tp  + v+  +w+++ + i a G+d p kqe+ +++lk +k v d ++q  + Ge+  ++  g +++ dv a+lGe++ G k+Grt +e + + d tG   qd a+ +v ++
  MMETSP1137-20121227|8692_1 153 VKANVAVVDAIEAIEEAFSKLAQGKVDVPFPMHIGIdetaEAGPGDCHIKGGYVSGTKTFTVKLACVsFYKNLEKGLPPGGGIFVVMDATNGAPLAIMQeNRYLTDLRTGAAGAVSVKYLTKPXHENVGFIGCGAIAKVMARGTAAVKP--GFKGHVFGFAGAEQFAAEMSeELGVEFTVAKSAQELCARSDIVFTQTPGSETVLEKKWLRPHATIIASGSDQPTKQEIPVDVLKSSKXVCDLVKQVSKVGELRSALKAGAMKESDVYAELGEIVNGTKPGRTGNE-LIVVDLTGTGAQDAAIGQVAWD 458
                 78889999*********************9999866111144579******************8765267999*************************7267********************************888776666666554..455555566789*******9778888999999999999**********************************************************************************************875.6688***********9998776 PP

>> TIGR03944  dehyd_SbnB_fam: 2,3-diaminopropionate biosynthesis protein SbnB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.0      0.68   9.2e+02     187     208 ..      53      74 ..      37      75 .. 0.72
   2 !   79.9   0.0   2.7e-26   3.7e-23      73     313 ..     218     458 ..     155     462 .. 0.81

  Alignments for each domain:
  == domain 1    score: -3.6 bits;  conditional E-value: 0.68
   TIGR03944 187 evaesaeealreadlvvlaTva 208
                 +  e +++ ++ea+l++ +T+a
  MMETSP1137-20121227|8692_1  53 RQDELLSAQATEAELLSWCTSA 74 
                 4555667888999999999998 PP

  == domain 2    score: 79.9 bits;  conditional E-value: 2.7e-26
   TIGR03944  73 iaSfpeNvekgleRAsaviiLNdaetgypvail.easliSaaRTAasaalaarvlakekkakrvgiiGcGlIarevlrfllelgpeleevslyDldearaeafaaelkeevekkvevaesaeealreadlvvlaTvaatpyiddlallkkgalvlni.S....LrDlapevilkadnivDdvehvlraktslelaeqetgsrefitaelaeiltgeklkredkdepilfsPfGlgilDlavaklvye 313
                   Sf +N+ekgl+    + +  da +g p+ai+ e   +   RT a  a+ +++l+k    ++vg+iGcG Ia+ + r  ++++p ++  +++    a ae+faae++ee   +++va+sa+e+++++d+v++ T  ++  + ++++l+++a+++   S     + +  +v+++++ + D v++v +       ++  + + + + ael+ei++g+k++r + +e i+    G g +D a++++  +
  MMETSP1137-20121227|8692_1 218 CVSFYKNLEKGLPPGGGIFVVMDATNGAPLAIMqENRYLTDLRTGAAGAVSVKYLTKP-XHENVGFIGCGAIAKVMARGTAAVKPGFKG-HVFGF--AGAEQFAAEMSEELGVEFTVAKSAQELCARSDIVFTQTPGSETVL-EKKWLRPHATIIASgSdqptKQEIPVDVLKSSKXVCDLVKQVSKVGELRSALKAGAMKESDVYAELGEIVNGTKPGR-TGNELIVVDLTGTGAQDAAIGQVAWD 458
                 459******************************4456899*****************9.999*************************87.67766..56899*******9988*************************9999.9*****9999875413111123455567777777**********999999998888999***************865.6678999999***********98765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (463 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       112  (0.0273038); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.38u 0.16s 00:00:00.54 Elapsed: 00:00:00.62
# Mc/sec: 985.66
//
Query:       MMETSP1137-20121227|8693_1  [L=294]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.7e-18   63.3   5.1    2.2e-09   33.8   0.0    3.9  3  TIGR00198 cat_per_HPI: catalase/peroxidase HPI


Domain annotation for each model (and alignments):
>> TIGR00198  cat_per_HPI: catalase/peroxidase HPI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.8   0.0   5.5e-13   2.2e-09      80     170 ..      49     143 ..      43     156 .. 0.85
   2 !    7.9   0.0   3.6e-05      0.15     224     257 ..     163     195 ..     151     198 .. 0.84
   3 !   20.1   0.4   7.3e-09     3e-05     296     396 ..     199     283 ..     196     289 .. 0.92

  Alignments for each domain:
  == domain 1    score: 33.8 bits;  conditional E-value: 5.5e-13
   TIGR00198  80 ggllirlawhaagtyriidgrggaadgsqrfap..lnswpdnvnl.dkarrllwpikkkygr.klswadliilagtvaledmglkvfgfaagred 170
                 g++lirl+wh ag y   +  gg  +  +rf+     ++  n  l d a +ll pi  ky    ls adl ++a +va++ mg        gr d
  MMETSP1137-20121227|8693_1  49 GPILIRLSWHDAGVYSAGNLTGGCPNAVMRFTDggEGKFGANAGLpDVALKLLEPITAKYVPgLLSNADLWVVAANVAIKAMGGPEIPTRFGRVD 143
                 899****************************97225679999999799************86258*****************9666555555555 PP

  == domain 2    score: 7.9 bits;  conditional E-value: 3.6e-05
   TIGR00198 224 saaqeirvtfarmgmndeetvaliagghtlgkch 257
                    +++r  f   g+ d++ val +g ht+gkch
  MMETSP1137-20121227|8693_1 163 KGIDHLREIFHPKGFTDKDIVAL-SGAHTVGKCH 195
                 566789999*************8.79******** PP

  == domain 3    score: 20.1 bits;  conditional E-value: 7.3e-09
   TIGR00198 296 sglevvwtttptkfdnnyleilfkyewelkkspagaiqfeavdakeiikdaedpnkkrkpimlvadlalrfdpefekisrrfleepeefeeafakawfklt 396
                 sg+++ wt++  kfdn+y++ +++ ++e++ s  g  q++  +                 iml +dlal  +p f++  +++ e+  +f e +  aw kl 
  MMETSP1137-20121227|8693_1 199 SGFDGKWTENHLKFDNSYFKEMLEKQYEKTESSKGCPQYKGAN---------------DTIMLISDLALL-EPPFKEFVEKYAEDQGAFFEDYKTAWVKLQ 283
                 9**************************************8754...............358*******96.688*************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (294 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        75  (0.0182838); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.29u 0.14s 00:00:00.43 Elapsed: 00:00:00.43
# Mc/sec: 902.44
//
Query:       MMETSP1137-20121227|8694_1  [L=298]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (298 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        91  (0.0221843); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.14s 00:00:00.40 Elapsed: 00:00:01.02
# Mc/sec: 385.62
//
Query:       MMETSP1137-20121227|8695_1  [L=122]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (122 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       170  (0.0414432); expected 82.0 (0.02)
Passed bias filter:                      133  (0.0324232); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.16s 00:00:00.33 Elapsed: 00:00:00.71
# Mc/sec: 226.80
//
Query:       MMETSP1137-20121227|8696_1  [L=260]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.25    9.4   3.1       0.18    9.8   0.1    2.3  2  TIGR03141 cytochro_ccmD: heme exporter protein CcmD


Domain annotation for each model (and alignments):
>> TIGR03141  cytochro_ccmD: heme exporter protein CcmD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.1   4.5e-05      0.18       4      46 ..     175     218 ..     175     219 .. 0.92
   2 ?   -2.6   0.3      0.33   1.4e+03      37      46 ..     229     238 ..     228     239 .. 0.72

  Alignments for each domain:
  == domain 1    score: 9.8 bits;  conditional E-value: 4.5e-05
   TIGR03141   4 GgYa.fYVWlaYgitalvLaglivwslldrrrllrelrrlqare 46 
                 GgY+  YV ++ g++ l+++  i+  +++ +++ + l+++++ +
  MMETSP1137-20121227|8696_1 175 GGYGyGYVAPSPGLVGLSVGLDIAGAIMREQQRQAFLEQQLRTQ 218
                 778747********************************999876 PP

  == domain 2    score: -2.6 bits;  conditional E-value: 0.33
   TIGR03141  37 relrrlqare 46 
                 +el+r++a++
  MMETSP1137-20121227|8696_1 229 AELQRQLAEQ 238
                 5788888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (260 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       165  (0.0402243); expected 82.0 (0.02)
Passed bias filter:                      120  (0.029254); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.24u 0.14s 00:00:00.38 Elapsed: 00:00:00.46
# Mc/sec: 746.03
//
Query:       MMETSP1137-20121227|8697_1  [L=214]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.045   11.5  11.1      0.075   10.7   7.7    1.3  1  TIGR04032 toxin_SdpC: antimicrobial peptide, SdpC family


Domain annotation for each model (and alignments):
>> TIGR04032  toxin_SdpC: antimicrobial peptide, SdpC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   7.7   1.8e-05     0.075     106     153 ..      28      74 ..       9      93 .. 0.62

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 1.8e-05
   TIGR04032 106 kvtgeanlvavvavaavlavvvvaaVAvatvalaavavnpavdstpva 153
                 + +++a+  a+v +aa +a+v++a VA+a va+aav+v+ av+ tp++
  MMETSP1137-20121227|8697_1  28 AAAAAAAKAAAVFAAAPAAAVAAAGVAAAGVAAAAVTVV-AVKKTPIH 74 
                 333333444444444445555555555555555555555.77777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (214 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       303  (0.0738664); expected 82.0 (0.02)
Passed bias filter:                      109  (0.0265724); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.27u 0.17s 00:00:00.44 Elapsed: 00:00:00.53
# Mc/sec: 532.94
//
Query:       MMETSP1137-20121227|8698_1  [L=445]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0073   13.4   0.0      0.038   11.1   0.0    2.0  2  TIGR00693 thiE: thiamine-phosphate pyrophosphorylase


Domain annotation for each model (and alignments):
>> TIGR00693  thiE: thiamine-phosphate pyrophosphorylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0     0.039   1.6e+02      47      72 ..     172     199 ..     162     205 .. 0.65
   2 !   11.1   0.0   9.2e-06     0.038      14      76 ..     255     324 ..     241     327 .. 0.82

  Alignments for each domain:
  == domain 1    score: -0.7 bits;  conditional E-value: 0.039
   TIGR00693  47 aeelqelckk..ynvplivnDrvdlAla 72 
                  +++ e ++k  +n++l+vnD    A +
  MMETSP1137-20121227|8698_1 172 EKNVPEFAEKlaANADLFVNDAFGTAHR 199
                 4445555554226899*****9877755 PP

  == domain 2    score: 11.1 bits;  conditional E-value: 9.2e-06
   TIGR00693  14 kelleiveaalkgG.vtlvQlRekese......teevlaeaeelqelckkynvplivnDrvdlAlaldad 76 
                 ++l+e+v++++ gG + +  l+ ++ e      +e+ l++a +l++++ ++++++i   +v +A +  ad
  MMETSP1137-20121227|8698_1 255 ESLMEKVDKIIIGGgMVFTFLKARGLEtgsslvEEDQLELATKLEKIAAEKGIDFILPTDVVVADKFAAD 324
                 78899999998877455555666666667899999*****************************999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (445 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       131  (0.0319356); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.14s 00:00:00.48 Elapsed: 00:00:00.33
# Mc/sec: 1779.85
//
Query:       MMETSP1137-20121227|8699_1  [L=288]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (288 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        75  (0.0182838); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.16s 00:00:00.39 Elapsed: 00:00:00.38
# Mc/sec: 1000.34
//
Query:       MMETSP1137-20121227|8700_1  [L=1249]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0055   13.7   0.2      0.028   11.4   0.0    1.9  2  TIGR03597 GTPase_YqeH: ribosome biogenesis GTPase YqeH
  ------ inclusion threshold ------
      0.053   10.4   0.0      0.087    9.7   0.0    1.2  1  TIGR00991 3a0901s02IAP34: GTP-binding protein
      0.054    9.3   0.0       0.08    8.8   0.0    1.1  1  TIGR00921 2A067: efflux transporter, putative, hydrophobe/amphiphile efflux-3 (HAE3) family


Domain annotation for each model (and alignments):
>> TIGR03597  GTPase_YqeH: ribosome biogenesis GTPase YqeH
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.4   0.0   2.1e-05     0.028     142     181 ..     162     203 ..     132     209 .. 0.77
   2 ?   -0.7   0.0     0.095   1.3e+02     208     249 ..     586     629 ..     578     638 .. 0.80

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 2.1e-05
   TIGR03597 142 lkellelikkare..kkdvyvvGvtNVGKSsliNkllklnkg 181
                 ++el + +++ ++    dv+v+G+   GKSs +N++++++  
  MMETSP1137-20121227|8700_1 162 MQELRNDLDDLSRskTADVVVIGMEGSGKSSTVNRIIRTAAR 203
                 555555555554433589*******************98764 PP

  == domain 2    score: -0.7 bits;  conditional E-value: 0.095
   TIGR03597 208 vllDtpGiineeqianllskkdlkkivpkkeikp..ktyqlkee 249
                  ++D  G++++++++ +++k+ l +i+++k +k+  ++ q++ e
  MMETSP1137-20121227|8700_1 586 HVVDVRGVFSNTKYTAFMDKQLLAQISMEKFVKEleRNAQASRE 629
                 689*************************9999862244555555 PP

>> TIGR00991  3a0901s02IAP34: GTP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.0   6.3e-05     0.087      37      68 ..     176     207 ..     147     220 .. 0.78

  Alignments for each domain:
  == domain 1    score: 9.7 bits;  conditional E-value: 6.3e-05
   TIGR00991  37 ssltilvmgkggvgksstvnsiigervaavsa 68 
                 ++  ++v+g  g gksstvn ii   +  +sa
  MMETSP1137-20121227|8700_1 176 KTADVVVIGMEGSGKSSTVNRIIRTAARKLSA 207
                 456799*****************877766665 PP

>> TIGR00921  2A067: efflux transporter, putative, hydrophobe/amphiphile efflux-3 (HAE3) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   0.0   5.8e-05      0.08     108     179 ..     150     223 ..     138     225 .. 0.84

  Alignments for each domain:
  == domain 1    score: 8.8 bits;  conditional E-value: 5.8e-05
   TIGR00921 108 klpksesevrevlselpeeaellvkdetlaliivqlesekdskqkvdiindveralertnfps..glkltlTGs 179
                  l k+ ++++++++el ++ ++l++ +t  ++++++e++ +s  + +ii    r+l+    p+     l+lTGs
  MMETSP1137-20121227|8700_1 150 GLRKNLEDMSVAMQELRNDLDDLSRSKTADVVVIGMEGSGKSSTVNRIIRTAARKLSASRGPPevSSSLNLTGS 223
                 577888999***********************************************987644411457999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1249 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       230  (0.0560702); expected 82.0 (0.02)
Passed bias filter:                      151  (0.0368113); expected 82.0 (0.02)
Passed Vit filter:                        27  (0.00658216); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.90u 0.18s 00:00:01.08 Elapsed: 00:00:00.97
# Mc/sec: 1699.53
//
Query:       MMETSP1137-20121227|8701_1  [L=166]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (166 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       141  (0.0343735); expected 82.0 (0.02)
Passed bias filter:                      125  (0.0304729); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.16s 00:00:00.36 Elapsed: 00:00:00.30
# Mc/sec: 730.34
//
Query:       MMETSP1137-20121227|8702_1  [L=390]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0011   15.7   0.4     0.0017   15.2   0.3    1.2  1  TIGR01941 nqrF: NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit
     0.0075   14.3   0.1      0.015   13.3   0.1    1.4  1  TIGR02007 fdx_isc: ferredoxin, 2Fe-2S type, ISC system


Domain annotation for each model (and alignments):
>> TIGR01941  nqrF: NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.3   8.3e-07    0.0017      66     116 ..     303     353 ..     285     364 .. 0.77

  Alignments for each domain:
  == domain 1    score: 15.2 bits;  conditional E-value: 8.3e-07
   TIGR01941  66 acGGggscgqcrvrvvegggeilpteksh.iskreakegwrlscqvkvkedl 116
                  cGG+g c  c v+vv+g  e+l  +k++     +    wrl+c++++   l
  MMETSP1137-20121227|8702_1 303 DCGGEGCCCTCAVEVVSGI-ELLSKQKTQeRQMLNRFPRWRLACKAAIDPTL 353
                 7***************976.5665554440333445578******9886554 PP

>> TIGR02007  fdx_isc: ferredoxin, 2Fe-2S type, ISC system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   0.1   7.1e-06     0.015      40      90 ..     303     349 ..     289     365 .. 0.81

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 7.1e-06
   TIGR02007  40 acekscacttchvivrkGfdsleeasekeedlldkawGleaesrlscqavv 90 
                  c +   c+tc v v  G++ l++++ +e ++l++     +  rl+c+a +
  MMETSP1137-20121227|8702_1 303 DCGGEGCCCTCAVEVVSGIELLSKQKTQERQMLNRF----PRWRLACKAAI 349
                 588899999************************985....45566666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (390 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        92  (0.0224281); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.30u 0.18s 00:00:00.48 Elapsed: 00:00:00.52
# Mc/sec: 989.92
//
Query:       MMETSP1137-20121227|8703_1  [L=190]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.3e-48  160.9   1.9    6.1e-48  160.7   1.3    1.0  1  TIGR03653 arch_L6P: archaeal ribosomal protein L6P
    1.1e-14   52.4   0.3    2.7e-14   51.2   0.2    1.7  1  TIGR03654 L6_bact: ribosomal protein L6


Domain annotation for each model (and alignments):
>> TIGR03653  arch_L6P: archaeal ribosomal protein L6P
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  160.7   1.3     3e-51   6.1e-48       3     170 .]       9     184 ..       7     184 .. 0.94

  Alignments for each domain:
  == domain 1    score: 160.7 bits;  conditional E-value: 3e-51
   TIGR03653   3 eieiPegvsvsieknevkvkgpkgeverelkypkieisved...dkvvletekarkkekalvgtykshiknmikGvtegfeyklkvvYaHFPmqvkv..egnkvvienflGekaprtakilkdvkvkvkge...evvvegidkEkvgqtaanieqatkikgkdrrvfqDGiyivek 170
                 +++iPegv+ +++ +e++vkgp+g++ r++k+  i+is  d    ++v+e  +++ k +a ++t +shi+n i Gvt+gf+yk++ vYaHFP++v +  ++++v+i nflGek  r+ + l dv+vk + +   e+v++g d+++v++t a i++ +++k+kd r f DGiy+ +k
  MMETSP1137-20121227|8703_1   9 TLQIPEGVTLTLKAREITVKGPRGTIVRSFKHMPIDISFTDdteREIVIERWFTSGKANASIRTCHSHITNAIIGVTKGFQYKMRFVYAHFPINVAItnKDKRVEIRNFLGEKVVRIVDALADVTVKRSTDvkdEIVLSGNDIDAVSRTCALIQNICHVKNKDIRKFLDGIYVSHK 184
                 589***********************************98844458************************************************999334678************************9987777**************************************9875 PP

>> TIGR03654  L6_bact: ribosomal protein L6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.2   0.2   1.3e-17   2.7e-14       7     150 ..       9     164 ..       5     174 .. 0.80

  Alignments for each domain:
  == domain 1    score: 51.2 bits;  conditional E-value: 1.3e-17
   TIGR03654   7 pieipagvevkvegekvtvkgpkgelslklkee.vkvkv...ednkivvkrkedskeakalhGltralinnmveGvseGfekkLelvGvGY....raqlkgkklelslGyshpve..veipegikvev..ekqteivvkgidkqkvgqvaaeiral 150
                 +++ip+gv+++++ +++tvkgp+g++ +++k+  ++++    ++++iv++r   s +a+a   ++++ i+n+++Gv++Gf+ k++ v   +     ++ k+k +e++    ++v   v++ ++++v+   + + eiv++g d  +v +++a i+++
  MMETSP1137-20121227|8703_1   9 TLQIPEGVTLTLKAREITVKGPRGTIVRSFKHMpIDISFtddTEREIVIERWFTSGKANASIRTCHSHITNAIIGVTKGFQYKMRFVYAHFpinvAITNKDKRVEIRNFLGEKVVriVDALADVTVKRstDVKDEIVLSGNDIDAVSRTCALIQNI 164
                 689**************************97755777551125678***************************************99766611114556889999986555555422677778888752146799***************988775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (190 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       182  (0.0443686); expected 82.0 (0.02)
Passed bias filter:                      110  (0.0268162); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.20u 0.19s 00:00:00.39 Elapsed: 00:00:00.38
# Mc/sec: 659.95
//
Query:       MMETSP1137-20121227|8704_1  [L=736]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (736 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        88  (0.0214529); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.17s 00:00:00.59 Elapsed: 00:00:00.97
# Mc/sec: 1001.48
//
Query:       MMETSP1137-20121227|8705_1  [L=321]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (321 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       694  (0.169186); expected 82.0 (0.02)
Passed bias filter:                      319  (0.0777669); expected 82.0 (0.02)
Passed Vit filter:                        66  (0.0160897); expected 4.1 (0.001)
Passed Fwd filter:                        11  (0.00268162); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.52u 0.24s 00:00:00.76 Elapsed: 00:00:00.89
# Mc/sec: 476.05
//
Query:       MMETSP1137-20121227|8706_1  [L=532]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.7e-11   40.9   0.0    5.8e-11   40.2   0.0    1.2  1  TIGR03598 GTPase_YsxC: ribosome biogenesis GTP-binding protein YsxC
    1.3e-10   38.9   0.0    2.2e-10   38.2   0.0    1.2  1  TIGR03596 GTPase_YlqF: ribosome biogenesis GTP-binding protein YlqF
    2.2e-08   31.4   0.0    2.9e-08   31.0   0.0    1.1  1  TIGR03594 GTPase_EngA: ribosome-associated GTPase EngA
    3.9e-07   27.1   0.0    5.4e-07   26.6   0.0    1.1  1  TIGR03918 GTP_HydF: [FeFe] hydrogenase H-cluster maturation GTPase HydF
    1.2e-05   22.4   0.0    1.6e-05   22.0   0.0    1.1  1  TIGR00991 3a0901s02IAP34: GTP-binding protein
    2.7e-05   21.3   0.0    3.9e-05   20.7   0.0    1.1  1  TIGR00450 mnmE_trmE_thdF: tRNA modification GTPase TrmE
    0.00018   18.8   0.0    0.00023   18.4   0.0    1.1  1  TIGR00436 era: GTP-binding protein Era
    0.00053   17.1   0.0    0.00075   16.6   0.0    1.1  1  TIGR03597 GTPase_YqeH: ribosome biogenesis GTPase YqeH
     0.0012   16.5   0.0      0.002   15.7   0.0    1.2  1  TIGR00231 small_GTP: small GTP-binding protein domain
     0.0033   13.5   0.0     0.0061   12.6   0.0    1.3  1  TIGR00993 3a0901s04IAP86: chloroplast protein import component Toc86/159, G and M domains
  ------ inclusion threshold ------
      0.028   11.1   0.0      0.047   10.4   0.0    1.2  1  TIGR03156 GTP_HflX: GTP-binding protein HflX


Domain annotation for each model (and alignments):
>> TIGR03598  GTPase_YsxC: ribosome biogenesis GTP-binding protein YsxC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.2   0.0   1.6e-13   5.8e-11      21      72 ..     141     191 ..     126     192 .. 0.90

  Alignments for each domain:
  == domain 1    score: 40.2 bits;  conditional E-value: 1.6e-13
   TIGR03598  21 iafaGrSNvGKSsliNaLtnrkklartSktPGrTqlinffevneelrlvDlP 72 
                 + ++GrSN+GKSs++NaL++ + +a +S +PG+T+ +   +v+e+l + D P
  MMETSP1137-20121227|8706_1 141 LTVIGRSNAGKSSVVNALVGAR-VASVSAQPGHTKRVQSARVSESLLVRDTP 191
                 5789****************98.**************999999988887777 PP

>> TIGR03596  GTPase_YlqF: ribosome biogenesis GTP-binding protein YlqF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.2   0.0   5.8e-13   2.2e-10     118     171 ..     138     191 ..     131     200 .. 0.95

  Alignments for each domain:
  == domain 1    score: 38.2 bits;  conditional E-value: 5.8e-13
   TIGR03596 118 airalvvGiPNvGKStliNrlakkkvakvgnkpgvTksqqwiklskeleLlDtP 171
                 ++ + v+G  N GKS+++N l++ +va+v ++pg Tk+ q  ++s++l + DtP
  MMETSP1137-20121227|8706_1 138 PLTLTVIGRSNAGKSSVVNALVGARVASVSAQPGHTKRVQSARVSESLLVRDTP 191
                 56789************************************************9 PP

>> TIGR03594  GTPase_EngA: ribosome-associated GTPase EngA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.0   0.0   7.8e-11   2.9e-08     170     212 ..     133     175 ..      82     191 .. 0.83

  Alignments for each domain:
  == domain 1    score: 31.0 bits;  conditional E-value: 7.8e-11
   TIGR03594 170 eeeeepikiaiiGrpNvGKStLvNallgeervivsdiaGtTrD 212
                 e+ e p+ +++iGr N+GKS+ vNal+g + + vs ++G T+ 
  MMETSP1137-20121227|8706_1 133 EDAELPLTLTVIGRSNAGKSSVVNALVGARVASVSAQPGHTKR 175
                 3345689999*****************************9985 PP

>> TIGR03918  GTP_HydF: [FeFe] hydrogenase H-cluster maturation GTPase HydF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.6   0.0   1.4e-09   5.4e-07       8      43 ..     139     174 ..     133     200 .. 0.85

  Alignments for each domain:
  == domain 1    score: 26.6 bits;  conditional E-value: 1.4e-09
   TIGR03918   8 lhialfGrrNaGKSsliNaltgqdvaivsdvpGtTt 43 
                 l+++++Gr NaGKSs++Nal+g  va vs +pG T 
  MMETSP1137-20121227|8706_1 139 LTLTVIGRSNAGKSSVVNALVGARVASVSAQPGHTK 174
                 57899****************************985 PP

>> TIGR00991  3a0901s02IAP34: GTP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.0   0.0   4.3e-08   1.6e-05      38      96 ..     138     193 ..     127     215 .. 0.75

  Alignments for each domain:
  == domain 1    score: 22.0 bits;  conditional E-value: 4.3e-08
   TIGR00991  38 sltilvmgkggvgksstvnsiigervaavsafqseglrpvlvsrtragftlniidtpgl 96 
                  lt+ v+g+   gkss vn+++g rva+vsa      r   v  +r   +l + dtp l
  MMETSP1137-20121227|8706_1 138 PLTLTVIGRSNAGKSSVVNALVGARVASVSAQPGHTKR---VQSARVSESLLVRDTPPL 193
                 69****************************97666655...445566667777777776 PP

>> TIGR00450  mnmE_trmE_thdF: tRNA modification GTPase TrmE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.7   0.0     1e-07   3.9e-05     207     246 ..     136     175 ..     127     183 .. 0.90

  Alignments for each domain:
  == domain 1    score: 20.7 bits;  conditional E-value: 1e-07
   TIGR00450 207 kdglklaivGktNvGKSSLlNallkkdraiVsdikGttRD 246
                 + +l l+++G+ N+GKSS++Nal+    a Vs+ +G t+ 
  MMETSP1137-20121227|8706_1 136 ELPLTLTVIGRSNAGKSSVVNALVGARVASVSAQPGHTKR 175
                 56899*******************************9985 PP

>> TIGR00436  era: GTP-binding protein Era
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.0   6.3e-07   0.00023       3      39 ..     141     176 ..     139     196 .. 0.84

  Alignments for each domain:
  == domain 1    score: 18.4 bits;  conditional E-value: 6.3e-07
   TIGR00436   3 vailGrpnvGKSTLlNkllgqkisivSpkaqTTrnri 39 
                  +++Gr+n+GKS ++N l+g+ ++ vS  +  T+  +
  MMETSP1137-20121227|8706_1 141 LTVIGRSNAGKSSVVNALVGARVASVSAQPGHTKR-V 176
                 689************************99988864.4 PP

>> TIGR03597  GTPase_YqeH: ribosome biogenesis GTPase YqeH
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0     2e-06   0.00075     159     215 ..     142     193 ..     133     200 .. 0.88

  Alignments for each domain:
  == domain 1    score: 16.6 bits;  conditional E-value: 2e-06
   TIGR03597 159 yvvGvtNVGKSsliNkllklnkgkkkvittSkfpgTTldlieipldkesvllDtpGi 215
                  v+G +N GKSs++N+l+       +v ++S  pg T  + + ++++   + Dtp +
  MMETSP1137-20121227|8706_1 142 TVIGRSNAGKSSVVNALVG-----ARVASVSAQPGHTKRVQSARVSESLLVRDTPPL 193
                 69****************3.....44689****************9999999**965 PP

>> TIGR00231  small_GTP: small GTP-binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   5.5e-06     0.002       6      44 ..     141     179 ..     138     185 .. 0.89

  Alignments for each domain:
  == domain 1    score: 15.7 bits;  conditional E-value: 5.5e-06
   TIGR00231   6 ivivGhvdvGKstLlnsllknkisiteskpgvtrdyvte 44 
                 ++++G++++GKs+  n l +  ++ ++++pg t+ + ++
  MMETSP1137-20121227|8706_1 141 LTVIGRSNAGKSSVVNALVGARVASVSAQPGHTKRVQSA 179
                 78****************************999887665 PP

>> TIGR00993  3a0901s04IAP86: chloroplast protein import component Toc86/159, G and M domains
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.6   0.0   1.6e-05    0.0061     113     160 ..     133     180 ..     126     210 .. 0.81

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 1.6e-05
   TIGR00993 113 delafslnilvlGkaGvGksatinsilgevkasidafglattsvreie 160
                 ++ ++ l++ v+G++  Gks+ +n+++g   as++a    t++v+   
  MMETSP1137-20121227|8706_1 133 EDAELPLTLTVIGRSNAGKSSVVNALVGARVASVSAQPGHTKRVQSAR 180
                 566788999***********************************9754 PP

>> TIGR03156  GTP_HflX: GTP-binding protein HflX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   0.00013     0.047     191     215 ..     140     164 ..     130     173 .. 0.87

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 0.00013
   TIGR03156 191 tvalvGYTNaGKstllnaltkaevl 215
                 t++++G  NaGKs+++nal++a+v 
  MMETSP1137-20121227|8706_1 140 TLTVIGRSNAGKSSVVNALVGARVA 164
                 6889****************99875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (532 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       150  (0.0365675); expected 82.0 (0.02)
Passed bias filter:                      116  (0.0282789); expected 82.0 (0.02)
Passed Vit filter:                        37  (0.00901999); expected 4.1 (0.001)
Passed Fwd filter:                        12  (0.0029254); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.50u 0.18s 00:00:00.68 Elapsed: 00:00:00.59
# Mc/sec: 1190.14
//
Query:       MMETSP1137-20121227|8708_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        52  (0.0126767); expected 82.0 (0.02)
Passed bias filter:                       44  (0.0107265); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.25
# Mc/sec: 279.82
//
Query:       MMETSP1137-20121227|8709_1  [L=102]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (102 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        81  (0.0197465); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.14s 00:00:00.27 Elapsed: 00:00:00.34
# Mc/sec: 395.97
//
Query:       MMETSP1137-20121227|8710_1  [L=343]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (343 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        66  (0.0160897); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.11s 00:00:00.38 Elapsed: 00:00:00.38
# Mc/sec: 1191.38
//
Query:       MMETSP1137-20121227|8711_1  [L=289]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (289 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        55  (0.0134081); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.18s 00:00:00.42 Elapsed: 00:00:00.35
# Mc/sec: 1089.85
//
Query:       MMETSP1137-20121227|8712_1  [L=341]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.039   12.1   0.1      0.091   10.9   0.0    1.6  1  TIGR00269 TIGR00269: TIGR00269 family protein


Domain annotation for each model (and alignments):
>> TIGR00269  TIGR00269: TIGR00269 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   2.2e-05     0.091      79      97 ..     300     318 ..     266     321 .. 0.79

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 2.2e-05
   TIGR00269  79 elrrCerCGePasgkiCka 97 
                 +  rC rCG+P  g+iC a
  MMETSP1137-20121227|8712_1 300 HGYRCRRCGQPKRGHICAA 318
                 4469*************87 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (341 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        51  (0.012433); expected 82.0 (0.02)
Passed bias filter:                       44  (0.0107265); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.27u 0.14s 00:00:00.41 Elapsed: 00:00:00.37
# Mc/sec: 1216.44
//
Query:       MMETSP1137-20121227|8713_1  [L=126]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.4e-08   30.6   0.1      9e-08   30.5   0.0    1.1  1  TIGR00082 rbfA: ribosome-binding factor A


Domain annotation for each model (and alignments):
>> TIGR00082  rbfA: ribosome-binding factor A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.5   0.0   2.2e-11     9e-08       9      98 ..       4      97 ..       1     118 [. 0.88

  Alignments for each domain:
  == domain 1    score: 30.5 bits;  conditional E-value: 2.2e-11
   TIGR00082  9 rveseikkeiaeilire.ikddrv...glltVtkVevSkdllhakvfvsvlkdeeaiekvvkalkkAkgfirsllgkrlrlrktpelsFvkDes 98
                r +s i + i+e  +++ i+d  +     l +t VevS  l+ a+vf + + d  +++   +al++  g+++ ++   lr +++ +l+Fv   s
  MMETSP1137-20121227|8713_1  4 RTASAIHRVISESFVKGvIYDGALkigRALNITRVEVSPSLHEARVFWEPIDDSVSVKXLQSALDRRIGIFNLEVNAYLRQKRAAKLRFVLEPS 97
                78899*****99988872567777555589************************************************************8776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (126 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        91  (0.0221843); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.16u 0.14s 00:00:00.30 Elapsed: 00:00:00.44
# Mc/sec: 377.97
//
Query:       MMETSP1137-20121227|8714_1  [L=300]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (300 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        90  (0.0219405); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.17s 00:00:00.42 Elapsed: 00:00:00.48
# Mc/sec: 824.93
//
Query:       MMETSP1137-20121227|8717_1  [L=660]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-14   50.7  13.5    1.2e-08   31.1   1.0    2.0  2  TIGR02917 PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein
    4.8e-14   50.3   8.5    1.6e-09   35.5   1.5    2.2  2  TIGR02521 type_IV_pilW: type IV pilus biogenesis/stability protein PilW
      5e-09   33.8   8.3    9.8e-05   19.9   2.3    2.5  2  TIGR02552 LcrH_SycD: type III secretion low calcium response chaperone LcrH/SycD
    9.7e-06   21.9   8.0    0.00035   16.7   0.2    2.1  2  TIGR03939 PGA_TPR_OMP: poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA
    2.7e-05   20.8   0.0      0.003   14.1   0.0    2.2  2  TIGR00990 3a0801s09: mitochondrial precursor proteins import receptor


Domain annotation for each model (and alignments):
>> TIGR02917  PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.1   1.0   1.5e-11   1.2e-08     468     564 ..     337     433 ..     334     435 .. 0.93
   2 !   28.1   6.1   1.2e-10     1e-07     138     242 ..     415     518 ..     411     528 .. 0.91

  Alignments for each domain:
  == domain 1    score: 31.1 bits;  conditional E-value: 1.5e-11
   TIGR02917 468 ynllgaiylgkkdlakAreafekALkiepdffpAlanLArldlqekniddAkqrfekvlaidpknlkallaLaelaarkgneeeavallekaaekdp 564
                 ++ +g  + + + +a+A +a+e AL++  d+f A ++LA   ++ ++++ A++ +e++ a  p + + +++L  +  r+++ ++a a + +a  + p
  MMETSP1137-20121227|8717_1 337 HVCRGDNLRAGGRYAEAAAAYESALSLRADYFDAHHSLASAREKLGDLPGAQASYESACALRPADARCVTNLGIVLRRQNKLSAAEAAYRRALSLSP 433
                 6677777788899**************************************************************************9999987766 PP

  == domain 2    score: 28.1 bits;  conditional E-value: 1.2e-10
   TIGR02917 138 lgeleeAqksleqAlaiapksleaklglAqlalaenkldearalvdevLtadpknvdAllLkgdlllssgnieeAlaayrkaielkpnaiaallalatilleege 242
                 + +l +A++++  Al+ +p+ + a ++l  +++ +nkldea + +d+++ a+p+ ++Al+ +g +    g+ + Ala+++ a++++p +++a+ ++   + ++++
  MMETSP1137-20121227|8717_1 415 QNKLSAAEAAYRRALSLSPS-ARAHAALGNVLALQNKLDEALESLDAAVDASPSDAKALNSRGVVREEMGKPADALADFEAAAAAEPGFAKAEHNARRLRAQLQR 518
                 678999************95.7899*****************************************************************999887776666665 PP

>> TIGR02521  type_IV_pilW: type IV pilus biogenesis/stability protein PilW
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.5   1.5   1.9e-12   1.6e-09      43     129 ..     346     432 ..     325     444 .. 0.91
   2 !   18.8   0.6   2.4e-07    0.0002      31      99 ..     435     503 ..     430     508 .. 0.88

  Alignments for each domain:
  == domain 1    score: 35.5 bits;  conditional E-value: 1.9e-12
   TIGR02521  43 eqgdlekAkenlekAleldpkdadanlalAlyyqqlgelekAeesfrkAltlkpnngdvlNNYGtFLcqqkkyeeAeqqfeaAiedp 129
                 + g +++A ++ e Al l +++ da+++lA + ++lg+l  A++s++ A +l p++++ + N G  L +q k   Ae+ +++A++  
  MMETSP1137-20121227|8717_1 346 AGGRYAEAAAAYESALSLRADYFDAHHSLASAREKLGDLPGAQASYESACALRPADARCVTNLGIVLRRQNKLSAAEAAYRRALSLS 432
                 56899******************************************************************************9865 PP

  == domain 2    score: 18.8 bits;  conditional E-value: 2.4e-07
   TIGR02521  31 akirvqLaleYleqgdlekAkenlekAleldpkdadanlalAlyyqqlgelekAeesfrkAltlkpnng 99 
                 a+++  L+     q++l++A e+l+ A+ + p+da+a ++++++ +++g+   A + f+ A + +p  +
  MMETSP1137-20121227|8717_1 435 ARAHAALGNVLALQNKLDEALESLDAAVDASPSDAKALNSRGVVREEMGKPADALADFEAAAAAEPGFA 503
                 667777777778899**********************************************99988765 PP

>> TIGR02552  LcrH_SycD: type III secretion low calcium response chaperone LcrH/SycD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   2.3   1.2e-07   9.8e-05      31     125 ..     347     441 ..     341     441 .. 0.95
   2 !   19.0   0.3   2.4e-07    0.0002      52     132 ..     435     517 ..     432     521 .. 0.92

  Alignments for each domain:
  == domain 1    score: 19.9 bits;  conditional E-value: 1.2e-07
   TIGR02552  31 qgkyeeAeklFqlLaaldpteakywlgLaaclqalkeyeeAiaaYalaaaldlddprpvyhaaecllalgekeeAlkaLklaieiaeekeeysel 125
                  g+y+eA+ +++    l +  ++ + +La+++ +l++  +A+a Y+ a al++ d+r v  ++++l   ++   A++a ++a+ ++ + +++++l
  MMETSP1137-20121227|8717_1 347 GGRYAEAAAAYESALSLRADYFDAHHSLASAREKLGDLPGAQASYESACALRPADARCVTNLGIVLRRQNKLSAAEAAYRRALSLSPSARAHAAL 441
                 59**********99999********************************************************************9999988875 PP

  == domain 2    score: 19.0 bits;  conditional E-value: 2.4e-07
   TIGR02552  52 akywlgLaaclqalkeyeeAiaaYalaaaldlddprpvyhaaecllalgekeeAlkaLklaieiae..ekeeyselkeraeam 132
                 a+ +++L+ +l  +++ +eA++  ++a+ ++++d++++  ++++  ++g++++Al+++++a++     +k+e+++ + ra+  
  MMETSP1137-20121227|8717_1 435 ARAHAALGNVLALQNKLDEALESLDAAVDASPSDAKALNSRGVVREEMGKPADALADFEAAAAAEPgfAKAEHNARRLRAQLQ 517
                 67899********************************************************9998878899999999998875 PP

>> TIGR03939  PGA_TPR_OMP: poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.2   4.3e-07   0.00035     393     461 ..     366     434 ..     363     444 .. 0.92
   2 !    7.4   2.4   0.00028      0.23     403     472 ..     443     512 ..     435     525 .. 0.84

  Alignments for each domain:
  == domain 1    score: 16.7 bits;  conditional E-value: 4.3e-07
   TIGR03939 393 dyleaqslkvlllaysgdlseAekkleellatAPgNqslrlalaeveraRgwprrAeqllkkaeslepd 461
                 dy +a+ + ++++   gdl+ A+++ e + a  P+++    +l+ v r +++ ++Ae ++++a sl p 
  MMETSP1137-20121227|8717_1 366 DYFDAHHSLASAREKLGDLPGAQASYESACALRPADARCVTNLGIVLRRQNKLSAAEAAYRRALSLSPS 434
                 899***************************************************************654 PP

  == domain 2    score: 7.4 bits;  conditional E-value: 0.00028
   TIGR03939 403 lllaysgdlseAekkleellatAPgNqslrlalaeveraRgwprrAeqllkkaeslepdslsaergqaet 472
                 ++la +++l+eA ++l+++    P +++    ++ v++  g+p +A   +++a + ep  + ae++   +
  MMETSP1137-20121227|8717_1 443 NVLALQNKLDEALESLDAAVDASPSDAKALNSRGVVREEMGKPADALADFEAAAAAEPGFAKAEHNARRL 512
                 5678899999999999999999999999999999999999999999999999999999988888765444 PP

>> TIGR00990  3a0801s09: mitochondrial precursor proteins import receptor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.0   3.6e-06     0.003     383     495 ..     352     463 ..     343     467 .. 0.88
   2 !    5.6   0.0    0.0013       1.1     186     228 ..     461     504 ..     460     522 .. 0.68

  Alignments for each domain:
  == domain 1    score: 14.1 bits;  conditional E-value: 3.6e-06
   TIGR00990 383 kaeedfdkalkkdsedsdiyyhraqlhfikgefaeaakdydksidldpdfifsyiqlavlqyklgsiassealfrrakkkfpeaPdvynyyaellldknkfdealekfdlaie 495
                 +a   ++ al + ++  d ++  a  +  +g+   a+  y+ +  l p        l+++  +++++  +ea +rra    p a   +   +++l  +nk+deale  d a++
  MMETSP1137-20121227|8717_1 352 EAAAAYESALSLRADYFDAHHSLASAREKLGDLPGAQASYESACALRPADARCVTNLGIVLRRQNKLSAAEAAYRRALSLSPSAR-AHAALGNVLALQNKLDEALESLDAAVD 463
                 56667788888888888888888888888899999*******************************************9888775.56779*******************986 PP

  == domain 2    score: 5.6 bits;  conditional E-value: 0.0013
   TIGR00990 186 aleldpdyvkalnrranaydqlgkyadalldltasslid.dfrd 228
                 a++  p   kaln r    +++gk adal d+ a +  + +f +
  MMETSP1137-20121227|8717_1 461 AVDASPSDAKALNSRGVVREEMGKPADALADFEAAAAAEpGFAK 504
                 55666777888888888888888888888888766543325654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (660 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       105  (0.0255973); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.53u 0.19s 00:00:00.72 Elapsed: 00:00:00.72
# Mc/sec: 1209.90
//
Query:       MMETSP1137-20121227|8719_1  [L=433]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (433 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        43  (0.0104827); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.13s 00:00:00.42 Elapsed: 00:00:00.52
# Mc/sec: 1099.06
//
Query:       MMETSP1137-20121227|8720_1  [L=133]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (133 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        37  (0.00901999); expected 82.0 (0.02)
Passed bias filter:                       36  (0.00877621); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.35
# Mc/sec: 501.56
//
Query:       MMETSP1137-20121227|8722_1  [L=171]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (171 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        78  (0.0190151); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.13s 00:00:00.31 Elapsed: 00:00:00.30
# Mc/sec: 752.34
//
Query:       MMETSP1137-20121227|8723_1  [L=193]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (193 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       134  (0.032667); expected 82.0 (0.02)
Passed bias filter:                      111  (0.02706); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.15s 00:00:00.34 Elapsed: 00:00:00.76
# Mc/sec: 335.18
//
Query:       MMETSP1137-20121227|8724_1  [L=205]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (205 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.16s 00:00:00.36 Elapsed: 00:00:01.26
# Mc/sec: 214.74
//
Query:       MMETSP1137-20121227|8725_1  [L=76]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (76 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       127  (0.0309605); expected 82.0 (0.02)
Passed bias filter:                      104  (0.0253535); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.27
# Mc/sec: 371.52
//
Query:       MMETSP1137-20121227|8726_1  [L=120]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (120 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        43  (0.0104827); expected 82.0 (0.02)
Passed bias filter:                       42  (0.0102389); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.15s 00:00:00.31 Elapsed: 00:00:00.31
# Mc/sec: 510.93
//
Query:       MMETSP1137-20121227|8727_1  [L=219]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (219 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       348  (0.0848367); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                        24  (0.0058508); expected 4.1 (0.001)
Passed Fwd filter:                        15  (0.00365675); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.16s 00:00:00.59 Elapsed: 00:00:00.99
# Mc/sec: 291.98
//
Query:       MMETSP1137-20121227|8728_1  [L=719]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (719 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       474  (0.115553); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.72u 0.16s 00:00:00.88 Elapsed: 00:00:00.82
# Mc/sec: 1157.32
//
Query:       MMETSP1137-20121227|8729_1  [L=40]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (40 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        15  (0.00365675); expected 82.0 (0.02)
Passed bias filter:                       12  (0.0029254); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.14s 00:00:00.23 Elapsed: 00:00:00.27
# Mc/sec: 195.54
//
Query:       MMETSP1137-20121227|8730_1  [L=228]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (228 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        61  (0.0148708); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.13s 00:00:00.32 Elapsed: 00:00:00.33
# Mc/sec: 911.92
//
Query:       MMETSP1137-20121227|8731_1  [L=348]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (348 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        67  (0.0163335); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.13s 00:00:00.38 Elapsed: 00:00:00.39
# Mc/sec: 1177.75
//
Query:       MMETSP1137-20121227|8732_1  [L=280]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.5e-38  130.6  11.6    1.7e-38  130.4   8.0    1.0  1  TIGR00803 nst: UDP-galactose transporter
    0.00099   16.5   0.1    0.00099   16.5   0.1    1.6  2  TIGR00817 tpt: Tpt phosphate/phosphoenolpyruvate translocator
     0.0032   15.0   0.9     0.0032   15.0   0.6    2.6  3  TIGR03340 phn_DUF6: phosphonate utilization associated putative membrane protein
      0.004   14.5   3.8      0.004   14.5   2.6    1.8  2  TIGR00688 rarD: protein RarD
  ------ inclusion threshold ------
       0.12   10.5   2.2        1.3    7.2   0.2    2.8  3  TIGR02811 formate_TAT: formate dehydrogenase region TAT target


Domain annotation for each model (and alignments):
>> TIGR00803  nst: UDP-galactose transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  130.4   8.0   2.1e-41   1.7e-38       2     222 .]       3     237 ..       2     237 .. 0.94

  Alignments for each domain:
  == domain 1    score: 130.4 bits;  conditional E-value: 2.1e-41
   TIGR00803   2 lsVPiliilkqnnlvlvalgnllaagkqvT.qlkilstalmtlgslvaslgdkqwfslkllklgvaivqlvqssa........ktlseg..nlvvglsavlsallssglagvyfekilkdkd...tsfyvrnlqlplfgllvtfvvlllsdgslisnkgffigyttavwivvllnvvgglcvglvvkyadnttksivlalsiilslllsvrlfdaklsltfalgvilvflatllY 222
                 l+VP+l++++qnnl++val  l ++++qv  q k+l ta +++ +l  +l  +qw++l +l+ gv +v+l +s++        + +++    l vg+ ++ +a l s  ag+yfe i k k+    s++ rn+ql+lf++ + f ++l++  +   +++  +g    v+++vlln+ ggl+v+ v+ky dn++k++++a s ++ +llsv+lf++  +l fa g+ lv +a+++Y
  MMETSP1137-20121227|8732_1   3 LAVPSLLYTLQNNLIFVALAHLEVVTFQVLyQAKLLITAVLSVIFLGHRLTAMQWAALLMLTIGVVAVELSNSEEvpqakrsrRNVQQDtfTLGVGTVSAFAAALLSSTAGIYFEVIVKAKEldaPSLWTRNVQLGLFSIPLAFGGVLVAGPASWDPNVLLQGFDWVVILLVLLNASGGLVVASVIKYGDNILKNFTTASSVVFGTLLSVVLFGFRPKLQFAWGATLVAVAAFVY 237
                 9************************************************************************999988887633444346777777777888888999**********99755568**********************************************************************************************************99 PP

>> TIGR00817  tpt: Tpt phosphate/phosphoenolpyruvate translocator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.1   1.2e-06   0.00099      84     183 ..      19     135 ..       6     165 .. 0.80
   2 ?   -1.9   0.1      0.49     4e+02      53      74 ..     194     215 ..     168     240 .. 0.58

  Alignments for each domain:
  == domain 1    score: 16.5 bits;  conditional E-value: 1.2e-06
   TIGR00817  84 vslskvavSfthtikalepifsvvlskfflgrefpltlylsLlpivlGva................lasltelsfnl.lgflsamisniefvarnifsKkiltkksldklnlyalis 183
                 v+l+  +v    ++   + ++++vls +flg+ ++ + + +Ll + +Gv                 +  +++  f l +g +sa+++ +   +  i+   i++ k+ld   l +  +
  MMETSP1137-20121227|8732_1  19 VALAHLEVVTFQVLYQAKLLITAVLSVIFLGHRLTAMQWAALLMLTIGVVavelsnseevpqakrsRRNVQQDTFTLgVGTVSAFAAALLSSTAGIYFEVIVKAKELDAPSLWTRNV 135
                 66777777777777888889*****************************999********999988666666666643899999999999999999999999999999877776665 PP

  == domain 2    score: -1.9 bits;  conditional E-value: 0.49
   TIGR00817  53 ilkkrlkiskallklllpvaiv 74 
                 ilk++ + s+ ++ +ll v ++
  MMETSP1137-20121227|8732_1 194 ILKNFTTASSVVFGTLLSVVLF 215
                 3444444444444444444444 PP

>> TIGR03340  phn_DUF6: phosphonate utilization associated putative membrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.6   3.8e-06    0.0032      98     139 ..      35      76 ..       2     122 .. 0.66
   2 ?   -1.8   0.1       0.5   4.1e+02     101     128 ..     149     176 ..     136     198 .. 0.75
   3 ?    3.5   0.1     0.012        10     244     270 ..     200     226 ..     195     237 .. 0.78

  Alignments for each domain:
  == domain 1    score: 15.0 bits;  conditional E-value: 3.8e-06
   TIGR03340  98 slPvlvaiaatlllgeeLsalaWlGillivlGllvlglskka 139
                 +  ++ a+ + ++lg+ L+a++W+ +l+ ++G++ + ls+ +
  MMETSP1137-20121227|8732_1  35 AKLLITAVLSVIFLGHRLTAMQWAALLMLTIGVVAVELSNSE 76 
                 333445666667777777777777777777777777766655 PP

  == domain 2    score: -1.8 bits;  conditional E-value: 0.5
   TIGR03340 101 vlvaiaatlllgeeLsalaWlGillivl 128
                 vlva+ a++  +  L++  W+ ill++l
  MMETSP1137-20121227|8732_1 149 VLVAGPASWDPNVLLQGFDWVVILLVLL 176
                 7889999998889999999999888765 PP

  == domain 3    score: 3.5 bits;  conditional E-value: 0.012
   TIGR03340 244 revsivlavllgilllnekvtlkrllg 270
                 +  s+v++ ll+++l++ + +l+   g
  MMETSP1137-20121227|8732_1 200 TASSVVFGTLLSVVLFGFRPKLQFAWG 226
                 5679************98888765555 PP

>> TIGR00688  rarD: protein RarD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   2.6   4.8e-06     0.004      73     139 ..       3      69 ..       1      78 [. 0.92
   2 ?   -2.0   0.1      0.53   4.4e+02      65      82 ..     199     217 ..     164     235 .. 0.58

  Alignments for each domain:
  == domain 1    score: 14.5 bits;  conditional E-value: 4.8e-06
   TIGR00688  73 lllaavliginwllfiWavnngslleaslGylinPlvsvvlGivflkeklsrlklvaviiailGviv 139
                 l++ ++l +++  l   a  +  ++   + y  + l++ vl ++fl+ +l  +++ a+ + ++Gv+ 
  MMETSP1137-20121227|8732_1   3 LAVPSLLYTLQNNLIFVALAHLEVVTFQVLYQAKLLITAVLSVIFLGHRLTAMQWAALLMLTIGVVA 69 
                 7889999999998888999999999999************************************985 PP

  == domain 2    score: -2.0 bits;  conditional E-value: 0.53
   TIGR00688  65 qkr.glilslllaavligi 82 
                      +++  ll+ vl g+
  MMETSP1137-20121227|8732_1 199 TTAsSVVFGTLLSVVLFGF 217
                 3332344444445555444 PP

>> TIGR02811  formate_TAT: formate dehydrogenase region TAT target
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.0     0.078        64       9      32 ..      83     109 ..      74     126 .. 0.57
   2 ?   -3.4   0.0       3.3   2.7e+03      13      22 ..     193     202 ..     193     206 .. 0.80
   3 ?    7.2   0.2    0.0016       1.3      16      47 ..     225     256 ..     221     263 .. 0.82

  Alignments for each domain:
  == domain 1    score: 1.9 bits;  conditional E-value: 0.078
   TIGR02811   9 lsRRdLLk...glavgaaagavaaatg 32 
                  sRR+  +    l+vg++ + +aa  +
  MMETSP1137-20121227|8732_1  83 RSRRNVQQdtfTLGVGTVSAFAAALLS 109
                 566664432222455555444444333 PP

  == domain 2    score: -3.4 bits;  conditional E-value: 3.3
   TIGR02811  13 dLLkglavga 22 
                 ++Lk++++++
  MMETSP1137-20121227|8732_1 193 NILKNFTTAS 202
                 5799999987 PP

  == domain 3    score: 7.2 bits;  conditional E-value: 0.0016
   TIGR02811  16 kglavgaaagavaaatgrvasasaaaepsepe 47 
                  g++++a+a+ v a+ gr+  a a+ + +e++
  MMETSP1137-20121227|8732_1 225 WGATLVAVAAFVYATNGRASPADADEAHEEQD 256
                 5899**************99888887777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (280 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       200  (0.0487567); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.24u 0.14s 00:00:00.38 Elapsed: 00:00:00.46
# Mc/sec: 803.41
//
Query:       MMETSP1137-20121227|8733_1  [L=672]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   1.6e-201  668.9   0.0   1.9e-201  668.7   0.0    1.0  1  TIGR00418 thrS: threonine--tRNA ligase
    8.9e-19   65.6   0.0      4e-09   33.8   0.0    2.2  2  TIGR00442 hisS: histidine--tRNA ligase
    2.9e-12   44.1   0.0    1.3e-06   25.4   0.0    2.2  2  TIGR00408 proS_fam_I: proline--tRNA ligase
    9.5e-11   38.7   0.0     0.0021   14.5   0.0    3.1  3  TIGR00389 glyS_dimeric: glycine--tRNA ligase
    2.2e-08   31.3   0.0    2.3e-07   27.9   0.0    2.0  2  TIGR00409 proS_fam_II: proline--tRNA ligase
    2.8e-08   30.3   0.0    3.8e-08   29.9   0.0    1.1  1  TIGR00344 alaS: alanine--tRNA ligase
    0.00041   17.3   0.0    0.00068   16.6   0.0    1.3  1  TIGR00414 serS: serine--tRNA ligase
      0.008   13.4   0.0      0.038   11.1   0.0    2.0  2  TIGR02367 PylS_Cterm: pyrrolysine--tRNA ligase, C-terminal region
  ------ inclusion threshold ------
      0.014   12.4   0.0      0.027   11.4   0.0    1.4  1  TIGR00443 hisZ_biosyn_reg: ATP phosphoribosyltransferase, regulatory subunit


Domain annotation for each model (and alignments):
>> TIGR00418  thrS: threonine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  668.7   0.0  4.2e-204  1.9e-201       1     560 [.     101     658 ..     101     662 .. 0.99

  Alignments for each domain:
  == domain 1    score: 668.7 bits;  conditional E-value: 4.2e-204
   TIGR00418   1 rhsiahllaeavkklyleeklavgpvvedgfyydvevekelaeedlekiekelkelakkklpvaklsvsleeakeafk.vleklklelldeieeeeekvtvyeqgkafvdlckgphlselsrik..afklekvagaywlgdekneelqriygiafekkkeLkeylkakeeakkrdHrklgkeleLfsfeeevgpGlvlwlpkGalirklledfvrekllkrgyeevetPiladlelweisghldkykermfrfkeeeekelvlkpmnCpghilifksslrsyrdLPlrlaelgvvhRyEksGeLvGLkRvRgftldDaHifctedQikeEiknalrliqkvlkklglseekvelstrdpedkyigedeewekaeakleealkeleveyeieegeaafygpKidfaikdaLkreiqlaTvQlDfelperfdltyvdedekekrPviiHrailGsieRfiaiLlEkaagelPlwLaPvQvrvipvsekhldyakkvaeklkkegirvdvddrneklgkkiReaqkekipyvlvvGdkEveeeavtvRerkeekkekmsleellek 560
                 rh++ah++a+av++l++++k+++gp++e+gfyyd++    + e+dl  i+ke+ +l+k+klp+++++v++eea+++++  +e++kle+l+     +e +t+y+ g+ ++dlc+gph++++++++  a++le++agayw+gdek ++lqriyg+a+e+ ++L+e+l+ +eeak+rdHr lgk l+Lfs+++ +g Glv+w+p+Ga++r+++ed +++ ++++gye ++tP++a+l+lw++sgh+d yke mf  +e e  ++ +kpmnCp+h+l+++++ rsyrdLPlr+aelg+v+RyE sG L+GL RvRgft+dDaHifc   Q+ +Ei  +l+l+  +l+k+g++e++v lstr pe+ ++g+d  w+ka+++l+ al  ++ +y ++eg +afygpKid++i+da++  +q++TvQ Df+lp+rf+++yv++++++++P+++Hrai+GsieRf+++LlE +ag++P+w+aPvQ r++pvs+ +  y+++v  k k++g+r+++d  + +lgk+i+ a++ekip+ +v+G  Eve+ +++   rk+++  km++++ ++ 
  MMETSP1137-20121227|8733_1 101 RHTTAHVMAMAVQRLFKDAKVTIGPWIEKGFYYDFDNPDVFQEKDLXRIKKEMDKLIKMKLPLTREEVTREEAERRIReADEPYKLEILEG---LKEPITIYHVGDRWWDLCAGPHVEHTGELDssAIALESIAGAYWRGDEKRPMLQRIYGTAWETAEQLEEHLRLLEEAKRRDHRTLGKALKLFSIQPDAGGGLVFWHPRGARVRRIIEDSWKQMHVDAGYELLYTPHMASLDLWKTSGHFDFYKEGMFDQMEVEGAQYQIKPMNCPFHVLVYQDEPRSYRDLPLRWAELGTVYRYERSGTLHGLFRVRGFTQDDAHIFCLPTQLADEIVGVLDLTEGILSKFGFTEYEVMLSTR-PEK-SVGSDDIWDKATEALKGALVRKGWDYSVDEGGGAFYGPKIDIKIRDAIGXLWQCSTVQCDFNLPQRFGMEYVSAEGSKEQPIMVHRAIFGSIERFFGVLLESTAGDFPFWIAPVQLRLLPVSDDFRPYCEEVLAKAKAAGLRAEIDVGGRSLGKQIKMANTEKIPLFAVIGKDEVESRTINAAPRKGGELGKMPFADAIDL 658
                 79***************************************************************************999**********6...679*************************99999**************************************************************************************************************************************************************************************************************************************.*98.5**************************************************************************************************************************************************************************************************998875 PP

>> TIGR00442  hisS: histidine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.8   0.0   8.7e-12     4e-09      10     163 ..     297     455 ..     292     476 .. 0.86
   2 !   29.4   0.0   1.8e-10   8.2e-08     325     392 ..     571     638 ..     548     649 .. 0.90

  Alignments for each domain:
  == domain 1    score: 33.8 bits;  conditional E-value: 8.7e-12
   TIGR00442  10 lpeeaekrqkveetirevfesygfeeietPilEktellkrkvGeetdivekemYsfedkggrslaLRpelTapvvRavvenklelkk.pfklyyigpvFRyErpqk..G..RyRqFhQldvevvGsesplad..aeiialaaelleelglkevtleinslg 163
                  p+ a++r+ +e+  +++  + g+e + tP + +++l k++   + d  ++ m++  + +g ++ ++p      v ++ ++ ++++  p+++ ++g v+RyEr     G  R+R F+Q d+ ++   + lad  + ++ l+  +l+++g++e+++ ++++ 
  MMETSP1137-20121227|8733_1 297 HPRGARVRRIIEDSWKQMHVDAGYELLYTPHMASLDLWKTSG--HFDFYKEGMFDQMEVEGAQYQIKPMNCPFHVLVYQDEPRSYRDlPLRWAELGTVYRYERSGTlhGlfRVRGFTQDDAHIFCLPTQLADeiVGVLDLTEGILSKFGFTEYEVMLSTRP 455
                 67888999*****************************99984..669*********************76655555555554444446***************98543466**************999877755899******************999885 PP

  == domain 2    score: 29.4 bits;  conditional E-value: 1.8e-10
   TIGR00442 325 advlvvaldeeaeaealklaeklrkagirvevdlegkklkkqlkyadkkgakfvvilgedelekgkvt 392
                 +++ +++++++ + ++ ++++k ++ag+r+e+d++g++l+kq+k a+++++++++++g+de+e+++++
  MMETSP1137-20121227|8733_1 571 VQLRLLPVSDDFRPYCEEVLAKAKAAGLRAEIDVGGRSLGKQIKMANTEKIPLFAVIGKDEVESRTIN 638
                 56778899999999*************************************************99876 PP

>> TIGR00408  proS_fam_I: proline--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0   1.4e-06   0.00064     112     182 ..     370     440 ..     287     470 .. 0.74
   2 !   25.4   0.0   2.9e-09   1.3e-06     219     364 ..     509     646 ..     485     664 .. 0.82

  Alignments for each domain:
  == domain 1    score: 16.5 bits;  conditional E-value: 1.4e-06
   TIGR00408 112 nlykkwvksyrdLPlklnqivnvfRyEkkht.rPllRtrEflfkEaHtlhataeeaeeevlkildlYkelie 182
                  +y+   +syrdLPl+   + +v+RyE   t + l R+r f+  +aH      ++ ++e++ +ldl + +++
  MMETSP1137-20121227|8733_1 370 LVYQDEPRSYRDLPLRWAELGTVYRYERSGTlHGLFRVRGFTQDDAHIF-CLPTQLADEIVGVLDLTEGILS 440
                 56888899********************988578*************55.4455555666677777777666 PP

  == domain 2    score: 25.4 bits;  conditional E-value: 2.9e-09
   TIGR00408 219 lqiatsHdLgqnFaktFeikfenkeg...ekayayqtsyGlstRvigaliliHsDdkGLvlPpkvapiqvvvipiifkkkenkkvlelarkveekLkkleiRvelderdnrpGkkfskaElkGiPlrlevgpkdieknavvvlrRdekk 364
                  q++t+     n  + F +++ + eg   + +++++  +G  +R  g+l+   + d    +P+ +ap+q  ++p       ++  + ++++v  k k++++R+e+d   +++Gk+ + a+ + iPl   +g  ++e  +++   R+  +
  MMETSP1137-20121227|8733_1 509 WQCSTVQ-CDFNLPQRFGMEYVSAEGskeQPIMVHRAIFGSIERFFGVLLESTAGD----FPFWIAPVQLRLLP------VSDDFRPYCEEVLAKAKAAGLRAEIDVGGRSLGKQIKMANTEKIPLFAVIGKDEVESRTINAAPRKGGE 646
                 4777763.45566677777777777744477899****************877766....6*************......3356789********************************************999****99999998665 PP

>> TIGR00389  glyS_dimeric: glycine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.0   4.7e-06    0.0021      28      89 ..     292     352 ..     288     361 .. 0.86
   2 !   13.8   0.0   7.5e-06    0.0034     180     225 ..     380     426 ..     375     439 .. 0.88
   3 !    6.5   0.0    0.0012      0.56     464     527 ..     563     625 ..     550     648 .. 0.84

  Alignments for each domain:
  == domain 1    score: 14.5 bits;  conditional E-value: 4.7e-06
   TIGR00389  28 glvDygPlGaelknnikkawrkffileeevlevdspiltpeevlkasGHvdkFtDalveckk 89 
                 glv + P Ga +++ i++ w+++ + + +   + +p + + +++k+sGH d +++ + ++ +
  MMETSP1137-20121227|8733_1 292 GLVFWHPRGARVRRIIEDSWKQMHV-DAGYELLYTPHMASLDLWKTSGHFDFYKEGMFDQME 352
                 566788*******999999987776.56778899*******************999998766 PP

  == domain 2    score: 13.8 bits;  conditional E-value: 7.5e-06
   TIGR00389 180 eklPFgvaqiGksfRnEis.prqgllRvrEFeqaEiefFvdPeeksh 225
                 + lP   a++G  +R E s + +gl+Rvr F+q +  +F+ P++ ++
  MMETSP1137-20121227|8733_1 380 RDLPLRWAELGTVYRYERSgTLHGLFRVRGFTQDDAHIFCLPTQLAD 426
                 579999***********983569*******************77555 PP

  == domain 3    score: 6.5 bits;  conditional E-value: 0.0012
   TIGR00389 464 rlkpkvaPikvlvlplvnkeelkeiakeiakaLrkeeiiikyddsgs.iGkrYaraDeiGtpfav 527
                 ++++++aP+++ +lp+++   ++   +e+  + +  ++++++d  g  +Gk+ + a+   +p   
  MMETSP1137-20121227|8733_1 563 DFPFWIAPVQLRLLPVSDD--FRPYCEEVLAKAKAAGLRAEIDVGGRsLGKQIKMANTEKIPLFA 625
                 699************9976..***********************9987***98877666666544 PP

>> TIGR00409  proS_fam_II: proline--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.9   0.0   5.1e-10   2.3e-07      36     164 ..     290     419 ..     267     445 .. 0.86
   2 ?    1.0   0.0      0.07        32     471     553 ..     568     647 ..     559     659 .. 0.82

  Alignments for each domain:
  == domain 1    score: 27.9 bits;  conditional E-value: 5.1e-10
   TIGR00409  36 asGlynylPlalrvlekvenivreemnkagaievl.lpalqsaelWqesgRwdkygeellrlkDrkerefvLgpthEEvitdlvkneiksYkqlPvnlYqiqtKfRDEiRP.RfGllRgREFimKDaYsFh 164
                 + Gl  + P + rv   +e   + +m+ +   e l  p + s +lW++sg +d y e ++   + ++ ++ + p        + ++e +sY++lP+    + t +R E      Gl+R R F   Da  F 
  MMETSP1137-20121227|8733_1 290 GGGLVFWHPRGARVRRIIEDSWK-QMHVDAGYELLyTPHMASLDLWKTSGHFDFYKEGMFDQMEVEGAQYQIKPMNCPFHVLVYQDEPRSYRDLPLRWAELGTVYRYERSGtLHGLFRVRGFTQDDAHIFC 419
                 67899999999999888888765.566555566652689999*********************************99999999************************9875158*************9986 PP

  == domain 2    score: 1.0 bits;  conditional E-value: 0.07
   TIGR00409 471 iAPyevvivvsnvkdeeqkklaeevyselkakgvdvllDdrneraGvkfrdseliGiplavvvGkksldnkeiEvkkrrngek 553
                 iAP ++ +++    d + + + eev ++ ka+g  + +D     +G +++  +   ipl  v+Gk ++++  i+   r+ ge 
  MMETSP1137-20121227|8733_1 568 IAPVQLRLLPV--SD-DFRPYCEEVLAKAKAAGLRAEIDVGGRSLGKQIKMANTEKIPLFAVIGKDEVESRTINAAPRKGGEL 647
                 66666666544..33.56788999999999999999999999999999999999999****************9999998875 PP

>> TIGR00344  alaS: alanine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.9   0.0   8.3e-11   3.8e-08     551     679 ..      96     229 ..      84     271 .. 0.85

  Alignments for each domain:
  == domain 1    score: 29.9 bits;  conditional E-value: 8.3e-11
   TIGR00344 551 leikknHsatHllhaalkkvlgehvkQaGslveakklrlDfshkravtkeelkkvEdlvneqilenlqvkvelmdleeakkk..galalfgeky....gekvRvvsvgdvsvelCgGtHvenTgeiglfkIvkee 679
                 + +k  H+  H++ +a+++   +     G   e k    Df      ++++l ++ + + + i+++l++  e + +eea++   +a   ++ ++    +e + + +vgd   +lC+G Hve+Tge++   I  e+
  MMETSP1137-20121227|8733_1  96 KLLKIRHTTAHVMAMAVQRLFKDAKVTIGPWIE-KGFYYDFDNPDVFQEKDLXRIKKEMDKLIKMKLPLTREEVTREEAERRirEADEPYKLEIleglKEPITIYHVGDRWWDLCAGPHVEHTGELDSSAIALES 229
                 567789***************999889999987.56889****************************************98622444457644456559***************************999887554 PP

>> TIGR00414  serS: serine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0   1.5e-06   0.00068     136     314 ..     267     442 ..     238     455 .. 0.82

  Alignments for each domain:
  == domain 1    score: 16.6 bits;  conditional E-value: 1.5e-06
   TIGR00414 136 dfkpkdHvellekldlldferavkvagsrfvvlknkgaklerALinfmLdllekkgysevvvPvlvnkellsgtgqlpkfeedifkveded..lyLiaTaEvplanl.haneileeeelpikyaavspcFRkEAGsaGkdtkGliRvHqFeKvElvkfvkpeesaeeleeliedaekilkeL 314
                 + k +dH +l++ l+l  ++     ag   v+ + +ga+++r +     +++ + gy+ +++P ++  +l ++ g++  ++e +f   + +   y i     p   l +++e  + ++lp++ a  ++ +R E    G   +Gl+Rv  F+  +   f+ p + a e   +++ +e il + 
  MMETSP1137-20121227|8733_1 267 EAKRRDHRTLGKALKLFSIQPD---AGGGLVFWHPRGARVRRIIEDSWKQMHVDAGYELLYTPHMASLDLWKTSGHFDFYKEGMFDQMEVEgaQYQIKPMNCPFHVLvYQDEPRSYRDLPLRWAELGTVYRYERS--G-TLHGLFRVRGFTQDDAHIFCLPTQLADEIVGVLDLTEGILSKF 442
                 5556677777777777766654...57777888899999999999999999**********************************9888777789999999999987256778888*****************53..3.469*******************998888777777777777665 PP

>> TIGR02367  PylS_Cterm: pyrrolysine--tRNA ligase, C-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0       0.6   2.7e+02     214     235 ..      96     117 ..      94     123 .. 0.84
   2 !   11.1   0.0   8.4e-05     0.038      33     164 ..     309     449 ..     300     463 .. 0.71

  Alignments for each domain:
  == domain 1    score: -1.5 bits;  conditional E-value: 0.6
   TIGR02367 214 rllkvredtknvrsaarslsyl 235
                 +llk+r+ t +v  +a   ++ 
  MMETSP1137-20121227|8733_1  96 KLLKIRHTTAHVMAMAVQRLFK 117
                 79***********999877665 PP

  == domain 2    score: 11.1 bits;  conditional E-value: 8.4e-05
   TIGR02367  33 relakalvdrGfvevkspiliskellekmtide..ddelfkqvfrvdekkclrpmlapnlynllrkldrllek.pirifeiGscyrkesdGseh....leeftmlnlvelGspeeerrer..leelikevleelGideyel 164
                 ++  ++ vd+G+  + +p + s++l +  +  +  ++ +f+q+     +  ++pm  p    ++++  r + + p+r  e+G+ yr e  G+ h    +  ft  +   + +p +   e   + +l + +l + G  eye+
  MMETSP1137-20121227|8733_1 309 DSWKQMHVDAGYELLYTPHMASLDLWKTSGHFDfyKEGMFDQMEVEGAQYQIKPMNCPFHVLVYQDEPRSYRDlPLRWAELGTVYRYERSGTLHglfrVRGFTQDDAHIFCLPTQLADEIvgVLDLTEGILSKFGFTEYEV 449
                 5556677788888888888888887777665442245678887766778899*******999999999998666*****************99843334555555555555555544443113456666666666666665 PP

>> TIGR00443  hisZ_biosyn_reg: ATP phosphoribosyltransferase, regulatory subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   5.9e-05     0.027       4     150 ..     297     452 ..     295     479 .. 0.84

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 5.9e-05
   TIGR00443   4 lpeeaakkeeierkleklfaswGYqeietPvlEylevllaklg..dleekvfklvdskgrvLaLRpdmTasiaRavs.trlkdqelplRlsyagkvfraee..kerg..ksreftQvGvEliGaksleaD..aEvialaleaLealglkelkvelG 150
                 +p+ a+ ++ ie+  +++    GY+   tP++  l++ ++++     +e +f  ++ +g    ++p   +  + +++ +    ++lplR    g+v+r+e+  + +g  + r ftQ  + ++   +  aD  + v+ l   +L++ g++e++v l+
  MMETSP1137-20121227|8733_1 297 HPRGARVRRIIEDSWKQMHVDAGYELLYTPHMASLDLWKTSGHfdFYKEGMFDQMEVEGAQYQIKPMNCPFHVLVYQdEPRSYRDLPLRWAELGTVYRYERsgTLHGlfRVRGFTQDDAHIFCLPTQLADeiVGVLDLTEGILSKFGFTEYEVMLS 452
                 8999999*******************************99888766788899999999********7666544455505556789***************94323335589999999999999999999866688999999999999999998875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (672 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       125  (0.0304729); expected 82.0 (0.02)
Passed bias filter:                      119  (0.0290102); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                         9  (0.00219405); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.56u 0.16s 00:00:00.72 Elapsed: 00:00:00.74
# Mc/sec: 1198.60
//
Query:       MMETSP1137-20121227|8734_1  [L=497]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.3e-09   33.5   0.4     0.0012   14.6   0.0    3.3  2  TIGR02917 PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein
    3.6e-05   21.5   1.1       0.74    8.0   0.0    5.1  5  TIGR00756 PPR: pentatricopeptide repeat domain
    0.00015   19.4   1.3       0.23    9.0   0.0    4.2  3  TIGR02552 LcrH_SycD: type III secretion low calcium response chaperone LcrH/SycD
    0.00015   19.2   1.5      0.035   11.5   0.1    3.2  2  TIGR02521 type_IV_pilW: type IV pilus biogenesis/stability protein PilW
     0.0032   14.0   0.0      0.022   11.2   0.0    2.0  2  TIGR00990 3a0801s09: mitochondrial precursor proteins import receptor
     0.0098   11.9   0.7       0.27    7.2   0.0    2.7  4  TIGR03939 PGA_TPR_OMP: poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA


Domain annotation for each model (and alignments):
>> TIGR02917  PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   0.1   5.3e-06    0.0036     703     798 ..      88     193 ..      82     199 .. 0.71
   2 !   14.6   0.0   1.8e-06    0.0012     764     830 ..     201     276 ..     195     278 .. 0.69

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 5.3e-06
   TIGR02917 703 algfeleGdlalrqkdykaAiq.aykkalkrapss.qtvikLaeallasgntaeAaktleawL........kehpkdavlrtalAelylaekdedkAakhYqtvvk 798
                 a++  +eG+   ++  y+ A++   + + +  p   +++  La++ +++g+ aeA++++e  L        ++hp+ + ++t+lA l  ++++ ++A+k Y  +++
  MMETSP1137-20121227|8734_1  88 AALRHFEGRQEEASDLYELAVAgRSRTFGQSDPRTlASIGGLASVRRQQGRFAEAEEMYERALcglerevgSKHPETLTVLTNLASLHKMQSNFEAAEKLYSVALE 193
                 5555666666666666666665234455566666656677889999999999999999988776666666678999999999999999999999999999988776 PP

  == domain 2    score: 14.6 bits;  conditional E-value: 1.8e-06
   TIGR02917 764 kehpkdavlrtalAelylaekdedkAakhYqtvv........kkapdnavvLNNLAwlalerkd.pkAleyAekAl 830
                 ++hp+ + + ++lA+ly    + dkA + Y+ +         +++pd +  +NNLA l + + +  +A+++ e+Al
  MMETSP1137-20121227|8734_1 201 SNHPDTLSTVFHLANLYASWGRLDKASSLYDRAMrgfesclgESHPDTLSSMNNLANLRATQGEyEQAERLYERAL 276
                 5778888888888888888888888888777643222222236788888888888888777777455888888887 PP

>> TIGR00756  PPR: pentatricopeptide repeat domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.1     0.034        23      12      25 ..     135     148 ..     133     151 .. 0.89
   2 ?   -1.5   0.0       1.1   7.6e+02      13      23 ..     178     188 ..     173     190 .. 0.84
   3 !    8.0   0.0    0.0011      0.74       8      27 ..     215     234 ..     212     238 .. 0.87
   4 ?    1.4   0.0      0.13        89      13      25 ..     262     274 ..     253     277 .. 0.87
   5 ?    2.1   0.0      0.08        55       5      21 ..     338     354 ..     335     355 .. 0.89

  Alignments for each domain:
  == domain 1    score: 3.3 bits;  conditional E-value: 0.034
   TIGR00756  12 kagrveeAlelfde 25 
                 ++gr+ eA+e++++
  MMETSP1137-20121227|8734_1 135 QQGRFAEAEEMYER 148
                 68**********97 PP

  == domain 2    score: -1.5 bits;  conditional E-value: 1.1
   TIGR00756  13 agrveeAlelf 23 
                 + ++e A++l+
  MMETSP1137-20121227|8734_1 178 QSNFEAAEKLY 188
                 67999999998 PP

  == domain 3    score: 8.0 bits;  conditional E-value: 0.0011
   TIGR00756   8 sglckagrveeAlelfdeMk 27 
                 + ++ +gr+++A +l+d+ +
  MMETSP1137-20121227|8734_1 215 NLYASWGRLDKASSLYDRAM 234
                 779*************9876 PP

  == domain 4    score: 1.4 bits;  conditional E-value: 0.13
   TIGR00756  13 agrveeAlelfde 25 
                 +g++e A++l+++
  MMETSP1137-20121227|8734_1 262 QGEYEQAERLYER 274
                 79*********97 PP

  == domain 5    score: 2.1 bits;  conditional E-value: 0.08
   TIGR00756   5 tlisglckagrveeAle 21 
                 +l+s l ++g+ +eA+ 
  MMETSP1137-20121227|8734_1 338 ALVSVLLEQGKHDEARA 354
                 7999***********87 PP

>> TIGR02552  LcrH_SycD: type III secretion low calcium response chaperone LcrH/SycD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.0     0.039        27      57      80 ..      86     109 ..      70     114 .. 0.85
   2 !    9.0   0.0   0.00034      0.23      16     108 ..     121     229 ..     112     239 .. 0.65
   3 ?    2.4   0.0     0.036        25      57      79 ..     254     276 ..     230     278 .. 0.79

  Alignments for each domain:
  == domain 1    score: 2.3 bits;  conditional E-value: 0.039
   TIGR02552  57 gLaaclqalkeyeeAiaaYalaaa 80 
                  Laa ++  ++ eeA + Y+la+a
  MMETSP1137-20121227|8734_1  86 NLAALRHFEGRQEEASDLYELAVA 109
                 699*****************9975 PP

  == domain 2    score: 9.0 bits;  conditional E-value: 0.00034
   TIGR02552  16 eqleaiYalAYnlyqqgkyeeAeklF.qlLaald.......pteakywlgLaaclqalkeyeeAiaaYalaa.....aldlddp...rpvyhaaecllalgekeeAlka 108
                  +l +i  lA    qqg+++eAe+++ ++L+ l+       p     +  La+ +++++++e A + Y++a+     +l  ++p   + v+h+a+ +   g+  +A + 
  MMETSP1137-20121227|8734_1 121 RTLASIGGLASVRRQQGRFAEAEEMYeRALCGLErevgskhPETLTVLTNLASLHKMQSNFEAAEKLYSVALegreeMLGSNHPdtlSTVFHLANLYASWGRLDKASSL 229
                 5666666666667788888888888855788876333333345566788999999999999999999999973333334444441113466666666666666666655 PP

  == domain 3    score: 2.4 bits;  conditional E-value: 0.036
   TIGR02552  57 gLaaclqalkeyeeAiaaYalaa 79 
                  La  +  ++eye+A   Y++a+
  MMETSP1137-20121227|8734_1 254 NLANLRATQGEYEQAERLYERAL 276
                 57777778888888888888875 PP

>> TIGR02521  type_IV_pilW: type IV pilus biogenesis/stability protein PilW
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.5   0.1    0.0017       1.2     111     193 ..     135     231 ..      76     232 .. 0.69
   2 !   11.5   0.1   5.1e-05     0.035      63     127 ..     205     277 ..     201     281 .. 0.81

  Alignments for each domain:
  == domain 1    score: 6.5 bits;  conditional E-value: 0.0017
   TIGR02521 111 qqkkyeeAeqqfeaAi......edpkYeqparsyeNaglcalkagdtekaekyltralkid........pkrpesllelaelklkkgqyaeAralle 193
                 qq+++ eAe+++e+A+         k +++  +++N++   + + ++e aek  + al+ +        p+   ++  la+l+ + g++ +A +l++
  MMETSP1137-20121227|8734_1 135 QQGRFAEAEEMYERALcglereVGSKHPETLTVLTNLASLHKMQSNFEAAEKLYSVALEGReemlgsnhPDTLSTVFHLANLYASWGRLDKASSLYD 231
                 5777777777777776222211123466677778888888888888888888888887654111111113333444556666666666666666666 PP

  == domain 2    score: 11.5 bits;  conditional E-value: 5.1e-05
   TIGR02521  63 kdadanlalAlyyqqlgelekAeesfrkAlt........lkpnngdvlNNYGtFLcqqkkyeeAeqqfeaAie 127
                 +  ++   lA +y + g+l+kA   + +A++         +p++ + +NN       q++ye+Ae+ +e+A++
  MMETSP1137-20121227|8734_1 205 DTLSTVFHLANLYASWGRLDKASSLYDRAMRgfesclgeSHPDTLSSMNNLANLRATQGEYEQAERLYERALS 277
                 5556667799999999999999999999995444444447999999999999999999999999999999986 PP

>> TIGR00990  3a0801s09: mitochondrial precursor proteins import receptor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.4   0.0    0.0037       2.5     538     574 ..     119     156 ..      89     196 .. 0.79
   2 !   11.2   0.0   3.2e-05     0.022     362     580 ..     120     370 ..     117     383 .. 0.75

  Alignments for each domain:
  == domain 1    score: 4.4 bits;  conditional E-value: 0.0037
   TIGR00990 538 dPesdiavitlaqlllqqekvdealklfera.aelart 574
                 dP++  ++ +la ++ qq++  ea +++era   l r 
  MMETSP1137-20121227|8734_1 119 DPRTLASIGGLASVRRQQGRFAEAEEMYERAlCGLERE 156
                 88988888899999999999999999999983345555 PP

  == domain 2    score: 11.2 bits;  conditional E-value: 3.2e-05
   TIGR00990 362 Prltqsyikrasinlelgdsdkaeedfdkal........kkdsedsdiyyhraqlhfikgefaeaakdydksid.....l...dpdfifsyiqlavlqyklgsiassealfrrakkkfpe.....aPdv...ynyyaellldknkfdealekfdlaie.lekelkpisvnvlPlinkalalfr..tkedfiea..ekllekalil....dPesdiavitlaqlllqqekvdealklferaaelarteeelvq 580
                 Pr   s    as+  ++g   +aee +++al         k +e   +    a lh ++ +f+ a+k y  + +     l    pd + +   la l    g+++++ +l+ ra++ f+       Pd     n  a+l   + ++++a + ++ a+  ++ +  + ++  l  in    l +   k d +e    ++l+  l+l     P++++++ +l  +ll q+k dea   +e    la + + ++ 
  MMETSP1137-20121227|8734_1 120 PRTLASIGGLASVRRQQGRFAEAEEMYERALcglerevgSKHPETLTVLTNLASLHKMQSNFEAAEKLYSVALEgreemLgsnHPDTLSTVFHLANLYASWGRLDKASSLYDRAMRGFESclgesHPDTlssMNNLANLRATQGEYEQAERLYERALSgFQSKFGADCLFTLTAINGYAGLRKqqGKLDVSEGlyRHVLQGRLKLlgagHPRCEQTRQALVSVLLEQGKHDEARA-LEAKRPLATARGRRLA 370
                 5555566667888888999999999999998555443333567777899999*****************99987333332332577788888999999999****************975222225775333799999******************974788899999999999998777766346777777533456666677656667**********************955.4666667766666665 PP

>> TIGR03939  PGA_TPR_OMP: poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.0     0.027        19     435     455 ..     129     149 ..      95     156 .. 0.75
   2 ?    2.0   0.1     0.015        10     434     458 ..     128     152 ..     118     189 .. 0.69
   3 !    7.2   0.0   0.00039      0.27     423     488 ..     201     274 ..     172     312 .. 0.83
   4 ?   -1.6   0.0      0.18   1.2e+02     348     369 ..     335     356 ..     303     365 .. 0.70

  Alignments for each domain:
  == domain 1    score: 1.1 bits;  conditional E-value: 0.027
   TIGR03939 435 laeveraRgwprrAeqllkka 455
                 la+v+r +g++ +Ae+++++a
  MMETSP1137-20121227|8734_1 129 LASVRRQQGRFAEAEEMYERA 149
                 555566666666666655555 PP

  == domain 2    score: 2.0 bits;  conditional E-value: 0.015
   TIGR03939 434 alaeveraRgwprrAeqllkkaesl 458
                  la+v+r +g++ +Ae+++++a   
  MMETSP1137-20121227|8734_1 128 GLASVRRQQGRFAEAEEMYERALCG 152
                 5678888888888888888877654 PP

  == domain 3    score: 7.2 bits;  conditional E-value: 0.00039
   TIGR03939 423 atAPgNqslrlalaeveraRgwprrAeqllkkaesl........epdslsaergqaetaldlqewrqaealidd 488
                 ++ P   s+   la+++++ g+ ++A +l+++a +          pd+ls   ++a+++ +++e++qae+l + 
  MMETSP1137-20121227|8734_1 201 SNHPDTLSTVFHLANLYASWGRLDKASSLYDRAMRGfesclgesHPDTLSSMNNLANLRATQGEYEQAERLYER 274
                 5567777888999******************996433333688899***********************99876 PP

  == domain 4    score: -1.6 bits;  conditional E-value: 0.18
   TIGR03939 348 leekLfyAlleaeqyeeAqall 369
                  ++ L+  lle+++++eA+al 
  MMETSP1137-20121227|8734_1 335 TRQALVSVLLEQGKHDEARALE 356
                 5567888888888888888775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (497 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        86  (0.0209654); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.52u 0.17s 00:00:00.69 Elapsed: 00:00:00.65
# Mc/sec: 1009.21
//
Query:       MMETSP1137-20121227|8735_1  [L=61]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-06   24.9   0.0    1.6e-06   24.8   0.0    1.0  1  TIGR02203 MsbA_lipidA: lipid A export permease/ATP-binding protein MsbA
    5.1e-06   22.8   0.0    5.7e-06   22.6   0.0    1.0  1  TIGR03796 NHLM_micro_ABC1: NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein
    2.8e-05   20.8   0.0    3.2e-05   20.6   0.0    1.0  1  TIGR02204 MsbA_rel: ABC transporter, permease/ATP-binding protein
    0.00051   16.5   0.0    0.00058   16.3   0.0    1.0  1  TIGR01193 bacteriocin_ABC: ABC-type bacteriocin transporter
    0.00052   16.4   0.0     0.0006   16.2   0.0    1.0  1  TIGR03797 NHLM_micro_ABC2: NHLM bacteriocin system ABC transporter, ATP-binding protein
    0.00066   15.9   0.0    0.00073   15.7   0.0    1.0  1  TIGR01846 type_I_sec_HlyB: type I secretion system ATPase
     0.0016   14.6   0.0     0.0018   14.4   0.0    1.0  1  TIGR00958 3a01208: antigen peptide transporter 2
  ------ inclusion threshold ------
      0.013   12.0   0.0      0.013   12.0   0.0    1.0  1  TIGR01192 chvA: glucan exporter ATP-binding protein


Domain annotation for each model (and alignments):
>> TIGR02203  MsbA_lipidA: lipid A export permease/ATP-binding protein MsbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.8   0.0     3e-09   1.6e-06     535     563 ..       2      30 ..       1      36 [. 0.93

  Alignments for each domain:
  == domain 1    score: 24.8 bits;  conditional E-value: 3e-09
   TIGR02203 535 aDrivvlddGkiverGtheeLlarnGlYa 563
                 aD i v++ Gk+verG h+ Ll+++G+Y 
  MMETSP1137-20121227|8735_1   2 ADLIAVINRGKVVERGNHTSLLQQRGIYL 30 
                 9***************************6 PP

>> TIGR03796  NHLM_micro_ABC1: NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.6   0.0   1.1e-08   5.7e-06     678     706 ..       2      30 ..       1      32 [. 0.94

  Alignments for each domain:
  == domain 1    score: 22.6 bits;  conditional E-value: 1.1e-08
   TIGR03796 678 cdeiivlerGkvverGtHeellakegaYa 706
                 +d i v++rGkvverG+H +ll++ g Y 
  MMETSP1137-20121227|8735_1   2 ADLIAVINRGKVVERGNHTSLLQQRGIYL 30 
                 799************************95 PP

>> TIGR02204  MsbA_rel: ABC transporter, permease/ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   0.0   6.2e-08   3.2e-05     541     568 ..       2      29 ..       1      35 [. 0.94

  Alignments for each domain:
  == domain 1    score: 20.6 bits;  conditional E-value: 6.2e-08
   TIGR02204 541 adrivvldkGriveqGthaeLiakggLy 568
                 ad i+v+++G++ve+G+h++L+++ g+y
  MMETSP1137-20121227|8735_1   2 ADLIAVINRGKVVERGNHTSLLQQRGIY 29 
                 89************************99 PP

>> TIGR01193  bacteriocin_ABC: ABC-type bacteriocin transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0   1.1e-06   0.00058     676     703 ..       3      30 ..       1      33 [. 0.91

  Alignments for each domain:
  == domain 1    score: 16.3 bits;  conditional E-value: 1.1e-06
   TIGR01193 676 dkiivldeGkiieqGshkellkenGfya 703
                 d i v+++Gk++e G+h++ll+++G y 
  MMETSP1137-20121227|8735_1   3 DLIAVINRGKVVERGNHTSLLQQRGIYL 30 
                 7799*********************996 PP

>> TIGR03797  NHLM_micro_ABC2: NHLM bacteriocin system ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0   1.2e-06    0.0006     651     679 ..       2      30 ..       1      33 [. 0.94

  Alignments for each domain:
  == domain 1    score: 16.2 bits;  conditional E-value: 1.2e-06
   TIGR03797 651 adrilvleeGrvveqGsyeeLlakeGlfa 679
                 ad i v++ G+vve+G++ +Ll+++G++ 
  MMETSP1137-20121227|8735_1   2 ADLIAVINRGKVVERGNHTSLLQQRGIYL 30 
                 89************************985 PP

>> TIGR01846  type_I_sec_HlyB: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   1.4e-06   0.00073     658     685 ..       2      29 ..       1      35 [. 0.93

  Alignments for each domain:
  == domain 1    score: 15.7 bits;  conditional E-value: 1.4e-06
   TIGR01846 658 adrilvlekGkivesGkheellakegly 685
                 ad i v+++Gk+ve+G+h  ll+++g y
  MMETSP1137-20121227|8735_1   2 ADLIAVINRGKVVERGNHTSLLQQRGIY 29 
                 7889**********************99 PP

>> TIGR00958  3a01208: antigen peptide transporter 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.0   3.5e-06    0.0018     680     708 ..       2      30 ..       1      32 [. 0.93

  Alignments for each domain:
  == domain 1    score: 14.4 bits;  conditional E-value: 3.5e-06
   TIGR00958 680 adkilvlkkgsvvelGthkqLmekedvyk 708
                 ad i+v+++g+vve G+h+ L +++++y 
  MMETSP1137-20121227|8735_1   2 ADLIAVINRGKVVERGNHTSLLQQRGIYL 30 
                 788***********************995 PP

>> TIGR01192  chvA: glucan exporter ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   2.5e-05     0.013     536     580 ..       2      46 ..       1      56 [. 0.86

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 2.5e-05
   TIGR01192 536 adlvlfldqgrliekgsfdeliqkdgrfakllrasgllieeeark 580
                 adl+  +++g+++e+g+   l q+ g + +   +  l  ++  r+
  MMETSP1137-20121227|8735_1   2 ADLIAVINRGKVVERGNHTSLLQQRGIYLSRRPTKKLAANDAHRR 46 
                 9*************************9999888888877776654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        83  (0.020234); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                        19  (0.00463189); expected 4.1 (0.001)
Passed Fwd filter:                         8  (0.00195027); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.13u 0.14s 00:00:00.27 Elapsed: 00:00:00.27
# Mc/sec: 298.20
//
Query:       MMETSP1137-20121227|8736_1  [L=173]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (173 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        79  (0.0192589); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.18s 00:00:00.36 Elapsed: 00:00:00.46
# Mc/sec: 496.39
//
Query:       MMETSP1137-20121227|8737_1  [L=219]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      8e-12   43.0   0.0      1e-11   42.7   0.0    1.2  1  TIGR01262 maiA: maleylacetoacetate isomerase


Domain annotation for each model (and alignments):
>> TIGR01262  maiA: maleylacetoacetate isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.7   0.0   2.5e-15     1e-11      32     202 ..      52     217 ..      18     219 .] 0.76

  Alignments for each domain:
  == domain 1    score: 42.7 bits;  conditional E-value: 2.5e-15
   TIGR01262  32 LlkdGeqkkeefkalNPqelvPtLkidegevltqSlAiieyLeetypepaLlpkdpakrarvralalliacdihPlqNlrvlqlleeklgvdeeekkewlkhwiekGlaa.lEellk...ekagafcvGdevtladvcLvpqvynAerfevdlaqyPtlkrieealaelpafqea 202
                 +     +k+++++a+NP+++vP+L  ++g+ +t+S Aii+ + ++     L  + p +ra++ +l    a+ + Pl  ++ l+ l+ek++ +++ + + ++   +  +a  l + l       ++++ G  +t +d +L+  + nAe+++  l+++P +k+  +++++ + +++a
  MMETSP1137-20121227|8737_1  52 F----VRKSDDYAANNPMRTVPALLLKDGTLITESGAIIDLILHE--AGGLTTTSPVARAKMMQLLFFSATTVFPLASVTYLEWLKEKVELQDTYRMQTSAMRFTGTVAPfLKSQLGkndYFLQEYFSG--PTAVDFMLAKPLGNAEKMGW-LEAFPEIKAFLQRIRSRESYAAA 217
                 3....357999*****************************87544..34799*************************************9999988887766555444441444454211223556655..7899**************96.9*********9999999888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (219 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        69  (0.0168211); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.22u 0.17s 00:00:00.39 Elapsed: 00:00:00.36
# Mc/sec: 802.93
//
Query:       MMETSP1137-20121227|8738_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        56  (0.0136519); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.46
# Mc/sec: 146.34
//
Query:       MMETSP1137-20121227|8739_1  [L=255]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        0.1   10.3   5.9       0.17    9.6   4.1    1.4  1  TIGR01144 ATP_synt_b: ATP synthase F0, B subunit


Domain annotation for each model (and alignments):
>> TIGR01144  ATP_synt_b: ATP synthase F0, B subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   4.1   4.3e-05      0.17      40     103 ..      61     123 ..      55     153 .. 0.79

  Alignments for each domain:
  == domain 1    score: 9.6 bits;  conditional E-value: 4.3e-05
   TIGR01144  40 kakkelalaqkkaqellkeakeeaaeiienAnkrkseikeeikkeAeeerekilakaeaeieae 103
                  +++e a a+k+ + +l ++ eea+ iie+ n  ++ ++  + keA + +  i ++ + e++  
  MMETSP1137-20121227|8739_1  61 MDEEESAAAKKQLTYELTSSTEEAQRIIEQGNYLAQLVLTAAVKEAVAIA-AIADREREEMDGL 123
                 57899999***************************999999999987654.3666666666644 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (255 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       203  (0.0494881); expected 82.0 (0.02)
Passed bias filter:                      144  (0.0351048); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.24u 0.11s 00:00:00.35 Elapsed: 00:00:00.42
# Mc/sec: 801.36
//
Query:       MMETSP1137-20121227|8740_1  [L=80]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (80 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        54  (0.0131643); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.19s 00:00:00.34 Elapsed: 00:00:00.40
# Mc/sec: 263.98
//
Query:       MMETSP1137-20121227|8741_1  [L=478]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.8e-21   73.6   0.0    1.4e-20   71.8   0.0    2.0  1  TIGR01510 coaD_prev_kdtB: pantetheine-phosphate adenylyltransferase
    2.5e-09   35.3   0.2    9.3e-06   23.6   0.0    2.4  2  TIGR00482 TIGR00482: nicotinate (nicotinamide) nucleotide adenylyltransferase
    5.6e-07   27.5   0.0    1.3e-06   26.4   0.0    1.6  1  TIGR00125 cyt_tran_rel: cytidyltransferase-related domain
     0.0013   15.6   3.7      0.002   15.0   2.5    1.2  1  TIGR00791 gntP: transporter, gluconate:H+ symporter (GntP) family


Domain annotation for each model (and alignments):
>> TIGR01510  coaD_prev_kdtB: pantetheine-phosphate adenylyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.8   0.0   1.3e-23   1.4e-20       1     153 [.     310     474 ..     310     476 .. 0.87

  Alignments for each domain:
  == domain 1    score: 71.8 bits;  conditional E-value: 1.3e-23
   TIGR01510   1 iavypGsFdPvtlGHldiikralklfdevivavainpsKkslfsleervelleeatkel....anvevkvfenlvvdlakelgakvivrGlRaatDfe.yElqlakvnkk....l...aeeietvfliaskeyaavssslvkeiaslggdvselvpeavaeklke 153
                 +av++ sF+P++ GH+ +++r ++   +v+ +v+ npsK++ +s+eer +lle a+++     ++ve +v+ + v  +a e +a ++ rG+R+  D    E  l+++n +    l      + t +l a+++ a++sss v+  ++  + + +lvp+ + e++ +
  MMETSP1137-20121227|8741_1 310 TAVFAASFNPPHAGHVALLRRLATTHARVYAVVSHNPSKTYAVSAEERATLLEAAVANEawlrERVECVVVGGYVWRYALERRADFLFRGIRSWRDDGlAEKLLEALNIAgpllLgpcRMPVPTRYLQADPRSAHISSSTVRRRIANSEPICDLVPACIHERVLA 474
                 59******************************************************55447889*****************************98864145555555543332222225679*********************9999************998865 PP

>> TIGR00482  TIGR00482: nicotinate (nicotinamide) nucleotide adenylyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.6   0.0   9.1e-09   9.3e-06       1      65 [.     312     371 ..     312     376 .. 0.83
   2 !    9.3   0.0   0.00023      0.23     158     187 ..     442     471 ..     428     476 .. 0.85

  Alignments for each domain:
  == domain 1    score: 23.6 bits;  conditional E-value: 9.1e-09
   TIGR00482   1 lfgGsFdPihlgHlllaeealealdldklivvpsaispvkkteekassehRlamlklaiekepkl 65 
                 +f  sF+P+h+gH++l+ +++     +++++v s  +p k  +   s+e+R ++l+ a+++e +l
  MMETSP1137-20121227|8741_1 312 VFAASFNPPHAGHVALLRRLAT--THARVYAVVS-HNPSKT-YA-VSAEERATLLEAAVANEAWL 371
                 6899***********9999875..4678888888.678885.55.666*************9997 PP

  == domain 2    score: 9.3 bits;  conditional E-value: 0.00023
   TIGR00482 158 aveiSStkiRkairegksveyllpeeViky 187
                    iSS+ +R++i +++++ +l+p  + + 
  MMETSP1137-20121227|8741_1 442 SAHISSSTVRRRIANSEPICDLVPACIHER 471
                 568*********************988765 PP

>> TIGR00125  cyt_tran_rel: cytidyltransferase-related domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.4   0.0   1.3e-09   1.3e-06       2      61 ..     311     366 ..     310     368 .. 0.94

  Alignments for each domain:
  == domain 1    score: 26.4 bits;  conditional E-value: 1.3e-09
   TIGR00125   2 vvfvGtFdplHlGHlklleeakelfdelivgvgsdefvnpekgpvtsaeerlemlkalky 61 
                 +vf  +F+p+H GH+ ll++ +    +++ +v    + np k   +saeer  +l+a+++
  MMETSP1137-20121227|8741_1 311 AVFAASFNPPHAGHVALLRRLATTHARVYAVV----SHNPSKTYAVSAEERATLLEAAVA 366
                 688899**************************....99******************9986 PP

>> TIGR00791  gntP: transporter, gluconate:H+ symporter (GntP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   2.5   1.9e-06     0.002      86     168 ..     249     332 ..     239     342 .. 0.84

  Alignments for each domain:
  == domain 1    score: 15.0 bits;  conditional E-value: 1.9e-06
   TIGR00791  86 ltllakfgkkkvqlavvlaglivglalFfevgl.vlliplvfaiake.akisllklaiPlvaalsvahgflpPhPgplaianelg 168
                 l +la++    v+ +vvl+++++ ++  f vg  vl++ l+f +a+e + ++  + ++P + +++ a++f pPh g +a+ ++l 
  MMETSP1137-20121227|8741_1 249 LSMLASLAVA-VDSIVVLVAVMLNIPTAFSVGAsVLILRLLFWLAAErTLVPYPYASLPRALTAVFAASFNPPHAGHVALLRRLA 332
                 5667777665.99*****************97549999*****99872567899*****9999999*************988775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (478 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       144  (0.0351048); expected 82.0 (0.02)
Passed bias filter:                       97  (0.023647); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.37u 0.14s 00:00:00.51 Elapsed: 00:00:00.37
# Mc/sec: 1705.16
//
Query:       MMETSP1137-20121227|8742_1  [L=263]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (263 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       115  (0.0280351); expected 82.0 (0.02)
Passed bias filter:                      115  (0.0280351); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.17s 00:00:00.42 Elapsed: 00:00:00.50
# Mc/sec: 694.26
//
Query:       MMETSP1137-20121227|8743_1  [L=537]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   1.6e-260  862.8  16.3     2e-260  862.5  11.3    1.0  1  TIGR02342 chap_CCT_delta: T-complex protein 1, delta subunit
   4.3e-152  505.3  14.6   5.1e-152  505.1  10.1    1.0  1  TIGR02339 thermosome_arch: thermosome, various subunits, archaeal
   1.4e-118  394.6  11.4   1.8e-118  394.3   7.9    1.0  1  TIGR02343 chap_CCT_epsi: T-complex protein 1, epsilon subunit
   3.3e-109  363.4   8.6     4e-109  363.1   6.0    1.0  1  TIGR02345 chap_CCT_eta: T-complex protein 1, eta subunit
   7.8e-108  359.3  16.7   9.6e-108  359.0  11.6    1.0  1  TIGR02340 chap_CCT_alpha: T-complex protein 1, alpha subunit
   4.1e-104  346.7  10.0   4.9e-104  346.5   6.9    1.0  1  TIGR02346 chap_CCT_theta: T-complex protein 1, theta subunit
   1.2e-103  345.3  11.2   1.4e-103  345.0   7.7    1.0  1  TIGR02344 chap_CCT_gamma: T-complex protein 1, gamma subunit
      3e-91  304.4  12.5    3.7e-91  304.1   8.7    1.0  1  TIGR02341 chap_CCT_beta: T-complex protein 1, beta subunit
    9.4e-81  269.7   9.1    1.2e-80  269.3   6.3    1.0  1  TIGR02347 chap_CCT_zeta: T-complex protein 1, zeta subunit
    2.6e-20   70.2  13.8      3e-14   50.2   3.6    2.6  3  TIGR02348 GroEL: chaperonin GroL


Domain annotation for each model (and alignments):
>> TIGR02342  chap_CCT_delta: T-complex protein 1, delta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  862.5  11.3  4.8e-263    2e-260       3     517 .]      23     537 .]      21     537 .] 1.00

  Alignments for each domain:
  == domain 1    score: 862.5 bits;  conditional E-value: 4.8e-263
   TIGR02342   3 ekekpedvrtsnivaakavadairtslGpkGmdkliqekkGeviitndGatilkqlevlhpaakllvelskaqdieaGdGttsvvvlaGalldaaekllekgihptiisesfqsaadealkilkelsipvdlsdrealiksattslsskvvsqyssllaplavdavlkvidsekdknvdlkdikvvkklGgtiddtelieGvvltqkasksaggptriekakigliqfqlsapktdmenqvvvsdyaqmdrvlkeerkyilnlvkkikkaganvlliqksilrdavndlalhflakkkilvvkdiereevefisktlGckpvasidkltadklGkaelveevksddskivkitGvknagktvsvlvrGsnklvideaerslhdalcvirslvkkraliaGGGapeieialklskkarelkGvesyivrafadalevipytlaenaGlnpikvvtelrnrhaqGektaGisvrkggitdileeevlqpllvtksavtlasetvrsilkiddivltr 517
                 ++ ++++vr+snivaakavada+rtslGp+Gmdk+i++  G+v+itndGatilkq+ev+hp+ak+lvelsk+qd+eaGdGtt+v v+aG+ll+ +e ll+kgihpt+is++f +aa ++ +il+ +s pvdl+dr++l+k+a+tsl+skv+s+++sllaplavda+  vid+++++nvdl+di vvkklGgtiddtel++G+v+tqkas++a+gptr+ +aki+liqf+lsapktd+e++vvvsdy+qmdr+lkeerkyil+l+kki+k+ganv+liqksilrdavn+l+lhflak+kilvvkdier+++efi+kt Gc p+a+ d+l a+klGka++veev ++d+k++k+tGv n gktv++l++ sn+lv++e+ rslhdalcv+r+lvkkr l +GGGape+++a +lsk +++l G+++y+v+afa+a+ev+pytlaenaGln+i+vvt+lrnrha Ge+ aGi+vrkg +t+ilee+vl pllv +sa+ la+e+vr ilkiddiv+tr
  MMETSP1137-20121227|8743_1  23 DRAQEKSVRESNIVAAKAVADAVRTSLGPRGMDKMISSPGGDVVITNDGATILKQMEVAHPTAKMLVELSKSQDVEAGDGTTTVTVIAGSLLNQSELLLKKGIHPTVISDAFLMAARKSEEILQAMSVPVDLGDRATLVKAASTSLNSKVISNNASLLAPLAVDALTAVIDPATATNVDLRDIAVVKKLGGTIDDTELVRGMVFTQKASHAASGPTRVPNAKIALIQFCLSAPKTDIEQNVVVSDYSQMDRILKEERKYILDLCKKIQKSGANVVLIQKSILRDAVNELSLHFLAKMKILVVKDIERDDIEFICKTCGCMPIANADTLHAEKLGKADMVEEVPTGDGKVIKVTGVPNGGKTVTILCKASNNLVLEESARSLHDALCVLRCLVKKRFLTPGGGAPEMQLAYQLSKWSNTLAGTHAYCVKAFAEAMEVVPYTLAENAGLNAIEVVTDLRNRHAAGESAAGINVRKGRVTNILEEDVLVPLLVHTSAIGLATECVRLILKIDDIVITR 537
                 678899**************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************997 PP

>> TIGR02339  thermosome_arch: thermosome, various subunits, archaeal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  505.1  10.1  1.3e-154  5.1e-152       9     519 ..      22     535 ..      19     537 .] 0.97

  Alignments for each domain:
  == domain 1    score: 505.1 bits;  conditional E-value: 1.3e-154
   TIGR02339   9 tqrtkgrdalksniaaakavaeavkstlGPrGlDkmLvdslGdvtitnDGatilkemdiehPaakllvevaktqdeevgDGtttavvlaGeLlekaedLleqdihPtviveGyrkaaekalevideiaekidvedkellkkvaetsltskavaeeakdklaelvveavkqvvekredgkykvdldnikiekkkGgsiedtelveGivvDkevvhe.gmPkrvenakialldaplevekteidaklkitspdqlkkfldqeeallkemvdkiadaGanvvicqkgi.....DdlaqhylakkGilavrrvkksDieklaratGakivsslkeieesdLGeaelveerkvgedklvfvega.knakavtillrGgtehvvdeleRaleDalkvvksvledgkvvaGgGavevelakrlreyaakieGreqlaveafadaleeiprilaenaGldpidalvelRakhekegnknagvdvftgeiedmlelgvieplkvkeqaiksateaatlilriDdvia 519
                 ++r++++++++sni aakava+av+++lGPrG+Dkm+  + Gdv+itnDGatilk+m++ hP+ak+lve +k+qd e+gDGttt+ v+aG+Ll+++e Ll+++ihPtvi + + +aa+k+ e+++ ++  +d+ d+ +l k a+tsl+sk++ ++++ +la l+v+a ++v++ +    ++vdl +i ++kk Gg+i+dtelv+G+v  +++ h    P+rv nakial+++ l   kt+i+ ++ +++ +q+ + l++e +++ +  +ki+++Ganvv+ qk+i     ++l  h+lak  il v+ + ++Die + + +G   +++ + +++++LG+a++vee  +g+ k++ v+g+ +  k+vtil + +++ v++e  R+l+Dal v+++++++  + +GgGa e++la +l ++++++ G +   v+afa+a+e +p +laenaGl++i+++++lR++h+  g+  ag++v++g+++++le++v+ pl v + ai  ate   lil+iDd++ 
  MMETSP1137-20121227|8743_1  22 SDRAQEKSVRESNIVAAKAVADAVRTSLGPRGMDKMISSPGGDVVITNDGATILKQMEVAHPTAKMLVELSKSQDVEAGDGTTTVTVIAGSLLNQSELLLKKGIHPTVISDAFLMAARKSEEILQAMSVPVDLGDRATLVKAASTSLNSKVI-SNNASLLAPLAVDALTAVIDPA--TATNVDLRDIAVVKKLGGTIDDTELVRGMVFTQKASHAaSGPTRVPNAKIALIQFCLSAPKTDIEQNVVVSDYSQMDRILKEERKYILDLCKKIQKSGANVVLIQKSIlrdavNELSLHFLAKMKILVVKDIERDDIEFICKTCGCMPIANADTLHAEKLGKADMVEEVPTGDGKVIKVTGVpNGGKTVTILCKASNNLVLEESARSLHDALCVLRCLVKKRFLTPGGGAPEMQLAYQLSKWSNTLAGTHAYCVKAFAEAMEVVPYTLAENAGLNAIEVVTDLRNRHAA-GESAAGINVRKGRVTNILEEDVLVPLLVHTSAIGLATECVRLILKIDDIVI 535
                 7899****************************************************************************************************************************************************.6999***************998..567***************************98888876156*****************************************************************976544467889****************************************************************5568******************************************************************************************************6.9***********************************************986 PP

>> TIGR02343  chap_CCT_epsi: T-complex protein 1, epsilon subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  394.3   7.9  4.3e-121  1.8e-118      22     530 ..      24     535 ..      14     537 .] 0.93

  Alignments for each domain:
  == domain 1    score: 394.3 bits;  conditional E-value: 4.3e-121
   TIGR02343  22 rlkGleakksniaaakavasilrtslGpkGldkiliskdgditvtndGatilekmdldeeiakllvelsksqdeeiGdGttgvvvlasalleqaeklldkGihpikiaeGfekaakvavekleeiaeeisvdednketllkaaktslgskivskskrrlaeiavdavlavadl.erkdvdfdlikvegkvGgsledtklikGilidkdlshpq.mkkevkdakiailtcpfeppkpktkhkldissveeykklekyekekfeemiddikksGanlvicqwGf.ddean....hlllqndlpavrwvgGkeleliaiatgGrivprfeelseeklGkaklvreksfGttkdrllvieqs.keskavtilvrGgnkliieeakrslhdalcvvrnlikdsrivyGGGaaeiacslaveeeadklsgveqyairafaealeeiplalaensGldpietlsevkakqlkeknpalGvdcleeGtndmkelkvletligkkqqillatqlvkmilkiddvis 530
                 r +   +  sni+aakava  +rtslGp+G+dk++ s+ gd+++tndGatil++m++ ++ ak+lvelsksqd e GdGtt+v v+a++ll+q+e ll+kGihp  i++ f +aa+ + e l+ ++  +  d  ++ tl+kaa tsl sk++s++   la +avda+ av+d     +vd+  i v +k Gg+++dt+l++G++  ++ sh    + +v +akia++   +  pk     ++++s   + +++ k e+++  ++ ++i+ksGan+v+ q     d  n    h+l + ++  v+ +   ++e+i  + g   ++  + l++eklGka +v+e    t + +++ +    +  k+vtil + +n+l++ee+ rslhdalcv+r l+k++ +  GGGa e+ ++  +++ ++ l+g + y ++afaea+e +p +laen+Gl+ ie++++++++      +a G++ ++   +++ e  vl +l+     i lat+ v++ilkidd+++
  MMETSP1137-20121227|8743_1  24 RAQEKSVRESNIVAAKAVADAVRTSLGPRGMDKMISSPGGDVVITNDGATILKQMEVAHPTAKMLVELSKSQDVEAGDGTTTVTVIAGSLLNQSELLLKKGIHPTVISDAFLMAARKSEEILQAMSVPV--DLGDRATLVKAASTSLNSKVISNNASLLAPLAVDALTAVIDPaTATNVDLRDIAVVKKLGGTIDDTELVRGMVFTQKASHAAsGPTRVPNAKIALIQFCLSAPKTDIEQNVVVSDYSQMDRILKEERKYILDLCKKIQKSGANVVLIQKSIlRDAVNelslHFLAKMKILVVKDIERDDIEFICKTCGCMPIANADTLHAEKLGKADMVEEVP--TGDGKVIKVTGVpNGGKTVTILCKASNNLVLEESARSLHDALCVLRCLVKKRFLTPGGGAPEMQLAYQLSKWSNTLAGTHAYCVKAFAEAMEVVPYTLAENAGLNAIEVVTDLRNRHAAG-ESAAGINVRKGRVTNILEEDVLVPLLVHTSAIGLATECVRLILKIDDIVI 535
                 666677889**********************************************************************************************************99999888776555..558999***********************************615689*********************************8626899*************************************************************98526767722234566789999*************9999999****************998866..5567788777661558**************************************************************************************************998765.5788*****99999*********************************996 PP

>> TIGR02345  chap_CCT_eta: T-complex protein 1, eta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  363.1   6.0  9.8e-112    4e-109      10     519 ..      21     535 ..      18     537 .] 0.94

  Alignments for each domain:
  == domain 1    score: 363.1 bits;  conditional E-value: 9.8e-112
   TIGR02345  10 gtdtsqGkgqlisninacvaiaeilkttlGPrGmdklivskek.avvsndGatilklldivhPaakllvdiaksqdsevGdGttsvvvlagellkeakplieeglhpqliiralrealklaieklkeiaveldeeksekrevleklaatalsskliaeekeffskmvvdavlsldkddldkk....liGvkkvkGGaledsvlvkGvafkktfsyaGfeqqPkkfanPkilllnvelelkaekdnaeirvedvedykeivdaewkiileklekivesGanvvlsklsi.....GdlatqyfadrdifcaGrvsdedlkrvvkatGasilsavsdleadvlGkcalfeekqiGserynlftggek.akactlilrGgaeqfleeaerslhdaimivrralkakkivaGGGaielelskllrekskkidgkqqliieavakaleviPrslaenaGfdsieilnklrkkhakkgekwaGvdieteeildaleafvwePllvkknalkaateaaatilsvdetik 519
                 + d +q k+   sni a++a+a++++t lGPrGmdk+i s     v++ndGatilk++++ hP+ak+lv+++ksqd e GdGtt+v+v+ag+ll+++  l+++g+hp +i  a+  a + + e l+ ++v +d      r  l k a+t+l+sk+i+++++ ++ + vda++ + + ++ ++    +i v k  GG+++d+ lv+G+ f +  s+a     P ++ n ki+l+ + l       + ++ v+d  +  +i+  e k il+  +ki++sGanvvl ++si      +l+  ++a+ +i+    ++ +d++ + k++G+  ++  ++l+a++lGk  + ee   G  +    tg+++ +k++t++ + + + +lee+ rslhda++++r  +k++ + +GGGa e++l+  l + s++++g +   ++a+a+a+ev+P++laenaG+++ie++ +lr++ha  ge+ aG+++ + ++++ le+ v  Pllv+  a+  ate  ++il++d+ + 
  MMETSP1137-20121227|8743_1  21 ASDRAQEKSVRESNIVAAKAVADAVRTSLGPRGMDKMISSPGGdVVITNDGATILKQMEVAHPTAKMLVELSKSQDVEAGDGTTTVTVIAGSLLNQSELLLKKGIHPTVISDAFLMAARKSEEILQAMSVPVD---LGDRATLVKAASTSLNSKVISNNASLLAPLAVDALTAVIDPATATNvdlrDIAVVKKLGGTIDDTELVRGMVFTQKASHAA--SGPTRVPNAKIALIQFCLSAPKTDIEQNVVVSDYSQMDRILKEERKYILDLCKKIQKSGANVVLIQKSIlrdavNELSLHFLAKMKILVVKDIERDDIEFICKTCGCMPIANADTLHAEKLGKADMVEEVPTGDGKVIKVTGVPNgGKTVTILCKASNNLVLEESARSLHDALCVLRCLVKKRFLTPGGGAPEMQLAYQLSKWSNTLAGTHAYCVKAFAEAMEVVPYTLAENAGLNAIEVVTDLRNRHAA-GESAAGINVRKGRVTNILEEDVLVPLLVHTSAIGLATECVRLILKIDDIVI 535
                 568888888888***************************9988799*************************************************************************99999*99999999...55699*****************************999875544333444499999999******************99997..68************99998777777778999**********************************999843333568889**************************************************************9973699****************************************************************************************************9.***********************************************9875 PP

>> TIGR02340  chap_CCT_alpha: T-complex protein 1, alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  359.0  11.6  2.3e-110  9.6e-108       6     528 ..      23     535 ..      20     537 .] 0.94

  Alignments for each domain:
  == domain 1    score: 359.0 bits;  conditional E-value: 2.3e-110
   TIGR02340   6 erksGedvrkqnvlavvavanivktslGPvGldkmlvddvGdvtitndGatilkklevehPaakvlvelaqlqdkevGdGttsvvilaaellkradelvkrkvhPtsvisGyrlalkeavkyikeklavsveelgkealinvaktslsskiislesdlfsnlvvdavlavkvtnekgetkyPikavnilkahGksaresllvkGyalnctvas.qqmpkrvkkakialldfnlqkaklklgvqivvedpeklekirkreadivkerikkilkaGanvvlttkGi.....ddlalkylveagvmavrrvkkedlkriakatGatlvssladleGeetleasllGeaeevveeriaddelilikgt.kkkksasiilrGandvlldemerslhdalcvvkrtleskkvvaGgGaveaalsiyleelattlgsreqlaiaefaealliiPkvlavnaakdstelvaklralhaaaqlkeekkklkflGldlsngkirdnveaGvlePavskvkslkfateaaitilriddlik 528
                 +r + ++vr+ n++a+ ava++v+tslGP G+dkm+    Gdv+itndGatilk++ev+hP+ak+lvel++ qd e GdGtt+v ++a +ll++++ l+k+ +hPt++ + + +a++++ + i + ++v v+   +++l+ +a tsl sk+is+++ l++ l+vda++av   + +  t+  ++++ ++k+ G++  ++ lv+G ++ ++++   + p+rv +akial+ f l   k ++  ++vv+d +++++i k+e + + + +kki k+Ganvvl  k i     ++l+l  l   +++ v+ ++++d+  i k+ G+     +a+   ++tl+a +lG+a+ v+e+  +d ++i + g  +  k+++i+ + +n+ +l+e  rslhdalcv++  +    + +GgGa e+ l+  l ++++tl       +++faea+ ++P +la na+ ++ e+v++lr  haa  ++        +G+++ +g++++ +e  vl P +     +  ate    il+idd++ 
  MMETSP1137-20121227|8743_1  23 DRAQEKSVRESNIVAAKAVADAVRTSLGPRGMDKMISSPGGDVVITNDGATILKQMEVAHPTAKMLVELSKSQDVEAGDGTTTVTVIAGSLLNQSELLLKKGIHPTVISDAFLMAARKSEE-ILQAMSVPVDLGDRATLVKAASTSLNSKVISNNASLLAPLAVDALTAVI--DPATATNVDLRDIAVVKKLGGTIDDTELVRGMVFTQKASHaASGPTRVPNAKIALIQFCLSAPKTDIEQNVVVSDYSQMDRILKEERKYILDLCKKIQKSGANVVLIQKSIlrdavNELSLHFLAKMKILVVKDIERDDIEFICKTCGCMP---IAN---ADTLHAEKLGKADMVEEVPTGDGKVIKVTGVpNGGKTVTILCKASNNLVLEESARSLHDALCVLRCLVKKRFLTPGGGAPEMQLAYQLSKWSNTLAGTHAYCVKAFAEAMEVVPYTLAENAGLNAIEVVTDLRNRHAAGESA--------AGINVRKGRVTNILEEDVLVPLLVHTSAIGLATECVRLILKIDDIVI 535
                 788999****************************************************************************************************************976.6679******999*********************************985..666788889***********************9988766414579*************************************************************99875443337899****************************854...444...689*************************99725578899999*********************************************************************************************9987665........5*******************************************985 PP

>> TIGR02346  chap_CCT_theta: T-complex protein 1, theta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  346.5   6.9  1.2e-106  4.9e-104      22     519 ..      33     536 ..      15     537 .] 0.95

  Alignments for each domain:
  == domain 1    score: 346.5 bits;  conditional E-value: 1.2e-106
   TIGR02346  22 knieaikelseitrtslGPngmnklvinhleklfvtnDaatilrelevqhPaakllvlaskaqeeelGDgtnlvlvlagelLekaeelirlGlspseiikGyelalkkalevLeelvvlevkdleekeelikalkaslsskqlgn.edilaelvakaiitvl.PknsekfnvdnirvvkllGgslsdsevlkGlvlkreaegsvk...rvkdakvavfscpldtattetkGtvLlknaeelldyskgeekkiealikeiadsgvkvivag.....gsvsdlalhyvekykilvlkisskfelrrlckvvgatalvrlsapspeelGlvdsvkveeigskkvtvikqeeedskistivLrGstknllddieraidDGvnvvkalvkdsrllpGagateieLakklkkyaeklkgleqyaikkfaeafeiiPrtlaenaGlnanevlskLyaahkkgnkslgidiekesdavkdvkeekiyDllaakkfaiklateaavtvLkvDqiima 519
                  ni a k +++ +rtslGP+gm+k++      +++tnD atil+++ev hP+ak+lv++sk q+ e GDgt  v v+ag lL+++e l++ G++p+ i + + +a++k +e+L+ ++v    dl ++ +l+ka  +sl sk ++n + +la l  +a+  v+ P   ++ ++  i vvk lGg++ d e+++G+v++++a        rv +ak+a  +  l + +t+    v++ +  ++    k e k i +l k+i++sg++v++ +      +v++l lh++ k kilv+k   + ++  +ck++g ++ +  ++ + e+lG+ d v+    g+ kv+ +    + +k+ ti+ + s + +l++  r+++D + v+++lvk+  l pG+ga e++La +l k +++l g + y++k faea+e++P tlaenaGlna ev+++L + h  g+  +gi++ k+ +  +++ ee+++  l   ++ai late++  +Lk+D i+++
  MMETSP1137-20121227|8743_1  33 SNIVAAKAVADAVRTSLGPRGMDKMISSPGGDVVITNDGATILKQMEVAHPTAKMLVELSKSQDVEAGDGTTTVTVIAGSLLNQSELLLKKGIHPTVISDAFLMAARKSEEILQAMSVP--VDLGDRATLVKAASTSLNSKVISNnASLLAPLAVDALTAVIdPATATNVDLRDIAVVKKLGGTIDDTELVRGMVFTQKASHAASgptRVPNAKIALIQFCLSAPKTDIEQNVVVSDYSQMDRILKEERKYILDLCKKIQKSGANVVLIQksilrDAVNELSLHFLAKMKILVVKDIERDDIEFICKTCGCMPIANADTLHAEKLGKADMVEEVPTGDGKVIKVTGVPNGGKTVTILCKASNNLVLEESARSLHDALCVLRCLVKKRFLTPGGGAPEMQLAYQLSKWSNTLAGTHAYCVKAFAEAMEVVPYTLAENAGLNAIEVVTDLRNRHAAGESAAGINVRKGRV--TNILEEDVLVPLLVHTSAIGLATECVRLILKIDDIVIT 536
                 499*****************************************************************************************************************986..6999******************98789*********998765999999****************************99877664445**********************************************************9766111115689********************************************************************999*****************************************************************************************************************99976..8***********************************96 PP

>> TIGR02344  chap_CCT_gamma: T-complex protein 1, gamma subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  345.0   7.7  3.4e-106  1.4e-103       9     520 ..      22     534 ..      19     537 .] 0.95

  Alignments for each domain:
  == domain 1    score: 345.0 bits;  conditional E-value: 3.4e-106
   TIGR02344   9 tkresGrkaqlsniqaakavadiirttlGpkamlkmlldplGgivltndGnailreidvahpaakslielsrtqdeevGdGttsviilaGellaaaepfleknihptvivraykkaledalkvleelsipvdvedeakllklvkssigtkfvsrwsdlvvdlaldavktvkleerngrklevdikryakvekipGGeiedsavlkGvllnkdvthp.kmrrkienprivlldcpleykkgesqtnveilkeedwnrllqleeeevkklceeiiavkpdlvitekG.....vsdlaqhyllkanisairrvrktdnnriarvsGativnrveelkesdvGtgaGlfevkkiGdeyftflteckd.pkactillrGaskdvlnevernlqdalavarnvllepklvpGGGatelavsvklkkkakklegveqlpyeavadaleviprtlvqncGvnvirtltelrakhaqeekkalGidGetGkivdmkekgiweplavklqtiktaiesavlllriddiv 520
                 ++r + + ++ sni aakavad +rt+lGp+ m km+  p G +v+tndG +il++++vahp+ak l+els++qd e GdGtt+v ++aG ll+++e +l+k ihptvi  a+  a  ++ ++l+ +s+pvd+ d+a+l k+ ++s+ +k++s+ ++l++ la+da ++v      +   +vd++  a v+k+ GG+i+d+ +++G+++ +   h+     ++ n +i l++  l   k++ + nv +++  +++r+l+ e++++  lc++i ++ +++v+ +k      v +l+ h+l+k +i +++ + + d + i + +G   ++ ++ l+ + +G+   ++e    Gd     +t   +  k+ til + +   vl+e  r l+dal v r ++ +  l+pGGGa e++ + +l+k +++l g + + ++a a+a+ev+p tl++n+G n+i  +t+lr +ha++ ++a Gi+ ++G+++++ e ++  pl v + +i  a e+  l+l+iddiv
  MMETSP1137-20121227|8743_1  22 SDRAQEKSVRESNIVAAKAVADAVRTSLGPRGMDKMISSPGGDVVITNDGATILKQMEVAHPTAKMLVELSKSQDVEAGDGTTTVTVIAGSLLNQSELLLKKGIHPTVISDAFLMAARKSEEILQAMSVPVDLGDRATLVKAASTSLNSKVISNNASLLAPLAVDALTAVIDPA--TA-TNVDLRDIAVVKKL-GGTIDDTELVRGMVFTQKASHAaSGPTRVPNAKIALIQFCLSAPKTDIEQNVVVSDYSQMDRILKEERKYILDLCKKIQKSGANVVLIQKSilrdaVNELSLHFLAKMKILVVKDIERDDIEFICKTCGCMPIANADTLHAEKLGKA-DMVEEVPTGDGKVIKVTGVPNgGKTVTILCKASNNLVLEESARSLHDALCVLRCLVKKRFLTPGGGAPEMQLAYQLSKWSNTLAGTHAYCVKAFAEAMEVVPYTLAENAGLNAIEVVTDLRNRHAAG-ESAAGINVRKGRVTNILEEDVLVPLLVHTSAIGLATECVRLILKIDDIV 534
                 57889999***************************************************************************************************************************************************************9998766..33.379**999988887.99*************9999998356789**********************************************************9999633333689**********************************************76.5555556799888888887652799*****************************************************************************************************9.5899********************************************9 PP

>> TIGR02341  chap_CCT_beta: T-complex protein 1, beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  304.1   8.7     9e-94   3.7e-91      11     512 ..      26     534 ..      18     537 .] 0.91

  Alignments for each domain:
  == domain 1    score: 304.1 bits;  conditional E-value: 9e-94
   TIGR02341  11 raenarlssfvgaiavgdlvkstlgpkgmdkillsasseasivvtndgatilksialdnpaakvlvdiskvqddevgdgttsvtvlaaellreaeklvnkkihpqtiiegyrlatkaalealkksavdnssdkvkfredllkiarttlsskilsqdkdhfaklavdavlrl...kgstnle..aiqiikklggklddsyldegfllekkig..vnqpkrienakiliantaldtdkvkvfgsrvrvdstaklaelekaekekmkekvekilkhninvf.inrqliy....nypeqlfadagvmaiehadfegverlalvtggeivstfdepelvklgscdlieeiligedkllkfsgvkl.geactivlrgatqqildeaerslhdalavlsqtvkesrtvlgggcaellmakaveeeaqkvagkkalaveafakalrqlptiladnagfdsaelvaklraahaegnstagldleegeiadlrklgivesyklkravvssaaeaaevllrvdnii 512
                 + ++ r s +v a av d v+++lgp+gmdk++ s +   ++v+tndgatilk++ +  p+ak+lv++sk qd e gdgtt+vtv+a  ll+++e l++k ihp +i + + +a++ + e l++ +v         r  l+k a t+l+sk++s++   +a lavda+  +     +tn++  +i ++kklgg +dd+ l  g+++ +k       p r+ naki + +  l + k  +   +v v   +++ ++ k e++ + +  +ki+k + nv  i++ ++     +    ++a++++  ++  + + +e ++   g   ++  d  +  klg+ d++ee+  g+ k++k +gv   g++ ti+ + + + +l+e+ rslhdal+vl   vk+   + ggg+ e+ +a  +++ ++  ag +a  v+afa a++ +p  la+nag+++ e+v+ lr  ha g+s+ag+++++g ++++ +  ++  + ++ + +  a+e+ +++l++d+i+
  MMETSP1137-20121227|8743_1  26 QEKSVRESNIVAAKAVADAVRTSLGPRGMDKMISSPGG--DVVITNDGATILKQMEVAHPTAKMLVELSKSQDVEAGDGTTTVTVIAGSLLNQSELLLKKGIHPTVISDAFLMAARKSEEILQAMSVPVDLG---DRATLVKAASTSLNSKVISNNASLLAPLAVDALTAVidpATATNVDlrDIAVVKKLGGTIDDTELVRGMVFTQKAShaASGPTRVPNAKIALIQFCLSAPKTDIE-QNVVVSDYSQMDRILKEERKYILDLCKKIQKSGANVVlIQKSILRdavnELSLHFLAKMKILVVKDIERDDIEFICKTCGCMPIANADTLHAEKLGKADMVEEVPTGDGKVIKVTGVPNgGKTVTILCKASNNLVLEESARSLHDALCVLRCLVKKRFLTPGGGAPEMQLAYQLSKWSNTLAGTHAYCVKAFAEAMEVVPYTLAENAGLNAIEVVTDLRNRHAAGESAAGINVRKGRVTNILEEDVLVPLLVHTSAIGLATECVRLILKIDDIV 534
                 4457899************************9988766..9***********************************************************************************99976544...5899**************************986544221677876533899******************998887511567**********************96.567788899*************************985255555540000555566899************************9**********************************76157889999999999******************************************************************************************************************************************98 PP

>> TIGR02347  chap_CCT_zeta: T-complex protein 1, zeta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  269.3   6.3     3e-83   1.2e-80       9     523 ..      22     534 ..      15     536 .. 0.94

  Alignments for each domain:
  == domain 1    score: 269.3 bits;  conditional E-value: 3e-83
   TIGR02347   9 aevlrkdaalkvnlnaakglqdvlktnlGPkGtlkmlvsgaGdikltkdGnvllkelqiqhPtasliaraaaaqdditGdGttstviligellkqaerlieeglhPrilteGleiakkealefleklkikkeeevdrelllevartslrtkleaeladklteivvdavlaikkdeee..idlfmveilemkhklevdtklirGlvldhGarhP.dmkrkvknvyiltlnvsleyektevnsgfvyssaeereklveaerkfvddrvkkiielkkkvvekkadkgfvvinqkGidplsldllakegilalrrakrrnlerltlacGGealnsvedltpeslGyaGlvyetvigeekytfieevkn.PksvtilikgpndhtlkqikdavrdGlravknaiedkcvvaGagafeiallkklkeekksvkGkaklgveafaeallviPkvlvensGydvqevlvkledeadearevvgvdletgesivaelkgiwdnysvkkqllssatviasqlllvdevl 523
                 ++ ++++++ + n+ aak+++d ++t lGP+G  km+ s  Gd+ +t dG ++lk++++ hPta+++   + +qd  +GdGtt++ +++g+ll+q+e l++ g+hP ++ + + +a +++ e l+ + +   +  dr +l+++a tsl  k+  + a  l+   vda+ a+ ++ ++  +dl  + +++    +  dt+l+rG+v+   a h  + +++v n+ i  +   l   kt++  ++v s+  + +++++ erk++ d  kki +   +vv  ++      i +  +++lsl  lak +il ++ + r ++e +  +cG  ++ + + l+ e+lG a +v e   g+ k   ++ v n  k+vtil k++n+  l+    +++d l  ++  ++ + + +G ga e++l+ +l +  +++ G +   v+afaea+ v+P +l+en+G++++ev+++l++++ ++++  g+++ +g  +   ++++   + v+  ++  at     +l +d+++
  MMETSP1137-20121227|8743_1  22 SDRAQEKSVRESNIVAAKAVADAVRTSLGPRGMDKMISSPGGDVVITNDGATILKQMEVAHPTAKMLVELSKSQDVEAGDGTTTVTVIAGSLLNQSELLLKKGIHPTVISDAFLMAARKSEEILQAMSVP-VDLGDRATLVKAASTSLNSKVISNNASLLAPLAVDALTAVIDPATAtnVDLRDIAVVKKLGGTIDDTELVRGMVFTQKASHAaSGPTRVPNAKIALIQFCLSAPKTDIEQNVVVSDYSQMDRILKEERKYILDLCKKIQKSGANVVLIQKS-----ILRDAVNELSLHFLAKMKILVVKDIERDDIEFICKTCGCMPIANADTLHAEKLGKADMVEEVPTGDGKVIKVTGVPNgGKTVTILCKASNNLVLEESARSLHDALCVLRCLVKKRFLTPGGGAPEMQLAYQLSKWSNTLAGTHAYCVKAFAEAMEVVPYTLAENAGLNAIEVVTDLRNRHAAGESAAGINVRKGRVTNILEEDVLVPLLVHTSAIGLATECVRLILKIDDIV 534
                 567778888899*******************************************************************************************************************885.4589************************************9988762366666666666666788***********9999972679********************************************999999999888888877733.....567899*******************************************************************9977369****************************************************************************************************************************************************9986 PP

>> TIGR02348  GroEL: chaperonin GroL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.2   3.6   7.3e-17     3e-14      16     156 ..      36     172 ..      24     226 .. 0.84
   2 ?   -1.9   0.1      0.45   1.8e+02     229     263 ..     280     314 ..     263     326 .. 0.79
   3 !   25.5   0.1   2.2e-09   9.2e-07     378     520 ..     387     534 ..     375     537 .] 0.84

  Alignments for each domain:
  == domain 1    score: 50.2 bits;  conditional E-value: 7.3e-17
   TIGR02348  16 kGvdkladavkvtlGPkgrnvvleksfGaPkitkdGvtvakeieledkfenlGaklvkevasktndvaGdGtttatvlaqaivkeGlknvaaGanpielkrGiekavekvveelkklskevkdkeeiaqvatisanndeei 156
                    +++adav++ lGP+g + +++   G   it+dG t+ k++e+ ++     ak++ e ++  +  aGdGttt tv+a +++++    +  G  p  +      a++k  e l+ +s +v+  +  + v + s++ ++++
  MMETSP1137-20121227|8743_1  36 VAAKAVADAVRTSLGPRGMDKMISSPGGDVVITNDGATILKQMEVAHPT----AKMLVELSKSQDVEAGDGTTTVTVIAGSLLNQSELLLKKGIHPTVISDAFLMAARKSEEILQAMSVPVDLGDRATLVKAASTSLNSKV 172
                 55689****************************************9987....56666666666667*****************************************************997776666666555544444 PP

  == domain 2    score: -1.9 bits;  conditional E-value: 0.45
   TIGR02348 229 kdllPllekvaksgkplliiaedvegealatlvvn 263
                 k +l l +k++ksg  +++i + +  +a+  l + 
  MMETSP1137-20121227|8743_1 280 KYILDLCKKIQKSGANVVLIQKSILRDAVNELSLH 314
                 45888999999999999999999999999888765 PP

  == domain 3    score: 25.5 bits;  conditional E-value: 2.2e-09
   TIGR02348 378 kvGaatetelkekkarvedalnatraaveeGiv.aGGGvallraaekleelkekse.dekvGveivkraleaPlrqiaenaGkdgavvvekvkek...kdeevGfnaatdeyedlveaGiidpakvtrsalqnaasiagllltteavv 520
                    a+ +  l e    + dal   r  v++  + +GGG+  +++a +l++ +++    ++  v+   +a+e    ++aenaG ++  vv +++++    ++  G n ++++ ++++e  ++ p  v  sa+  a+    l+l  + +v
  MMETSP1137-20121227|8743_1 387 LCKASNNLVLEESARSLHDALCVLRCLVKKRFLtPGGGAPEMQLAYQLSKWSNTLAgTHAYCVKAFAEAMEVVPYTLAENAGLNAIEVVTDLRNRhaaGESAAGINVRKGRVTNILEEDVLVPLLVHTSAIGLATECVRLILKIDDIV 534
                 44566666777888889***********98754389**************66555549999**********9999**************99998722235689*******************************99999999776555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (537 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       231  (0.056314); expected 82.0 (0.02)
Passed bias filter:                      106  (0.0258411); expected 82.0 (0.02)
Passed Vit filter:                        21  (0.00511945); expected 4.1 (0.001)
Passed Fwd filter:                        10  (0.00243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.60u 0.18s 00:00:00.78 Elapsed: 00:00:00.66
# Mc/sec: 1073.91
//
Query:       MMETSP1137-20121227|8744_1  [L=41]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (41 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        26  (0.00633837); expected 82.0 (0.02)
Passed bias filter:                       25  (0.00609459); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:00.25
# Mc/sec: 216.46
//
Query:       MMETSP1137-20121227|8745_1  [L=284]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (284 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        57  (0.0138957); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.16s 00:00:00.39 Elapsed: 00:00:00.35
# Mc/sec: 1071.00
//
Query:       MMETSP1137-20121227|8746_1  [L=476]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00069   17.0   0.0      0.013   12.8   0.0    2.2  2  TIGR00633 xth: exodeoxyribonuclease III (xth)
     0.0082   13.6   0.0       0.36    8.2   0.0    2.2  2  TIGR00195 exoDNase_III: exodeoxyribonuclease III


Domain annotation for each model (and alignments):
>> TIGR00633  xth: exodeoxyribonuclease III (xth)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.8   0.0   6.4e-06     0.013      15      75 ..      60     120 ..      55     148 .. 0.73
   2 ?    1.6   0.0     0.017        35     129     155 ..     270     296 ..     258     299 .. 0.78

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 6.4e-06
   TIGR00633  15 lkklflellkeekpDvlclQEtKvaeeqlpkelleeegYevafssakkk..gysGvallskee 75 
                 l+k+ + ll+e+   v+clQE  ++ +     l+e++gY+ ++ +   k  g+ Gv +++ ++
  MMETSP1137-20121227|8746_1  60 LEKKLIPLLEEN--AVICLQELSASFAAHLVVLFERHGYHLVHDQYAGKssGFMGVGIAYPRA 120
                 556656666555..49*********999999999******99987665456******997543 PP

  == domain 2    score: 1.6 bits;  conditional E-value: 0.017
   TIGR00633 129 allaklekeldkekpvvlcGDlNvahe 155
                 all +  +++ +++p+++ GD+N  ++
  MMETSP1137-20121227|8746_1 270 ALLGQRVQSIVQNEPLIIAGDFNFVPN 296
                 55555666777899*********8876 PP

>> TIGR00195  exoDNase_III: exodeoxyribonuclease III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.2   0.0   0.00018      0.36      17      67 ..      63     115 ..      56     136 .. 0.79
   2 !    3.1   0.0    0.0067        14     122     152 ..     267     296 ..     230     310 .. 0.83

  Alignments for each domain:
  == domain 1    score: 8.2 bits;  conditional E-value: 0.00018
   TIGR00195  17 klleflkeekpDvlclqEtkvadeqfpkelvekegYhvffsga....kgysGvai 67 
                 kl+  l+e+   v+clqE  ++  +    l+e++gYh ++++      g+ Gv i
  MMETSP1137-20121227|8746_1  63 KLIPLLEEN--AVICLQELSASFAAHLVVLFERHGYHLVHDQYagksSGFMGVGI 115
                 456666665..59************************998766453456677766 PP

  == domain 2    score: 3.1 bits;  conditional E-value: 0.0067
   TIGR00195 122 qfleelqkyleklekkdkpvlicGDlniape 152
                 +  + l + +++ +++ +p++i GD+n  p+
  MMETSP1137-20121227|8746_1 267 TLAALLGQRVQSIVQN-EPLIIAGDFNFVPN 296
                 5556677788888887.9*********9886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (476 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       127  (0.0309605); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.33u 0.17s 00:00:00.50 Elapsed: 00:00:00.50
# Mc/sec: 1256.54
//
Query:       MMETSP1137-20121227|8747_1  [L=859]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (859 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       182  (0.0443686); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.52u 0.18s 00:00:00.70 Elapsed: 00:00:00.57
# Mc/sec: 1954.80
//
Query:       MMETSP1137-20121227|8749_1  [L=32]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (32 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        43  (0.0104827); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.13s 00:00:00.23 Elapsed: 00:00:00.24
# Mc/sec: 175.99
//
Query:       MMETSP1137-20121227|8750_1  [L=488]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (488 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        87  (0.0212092); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.13s 00:00:00.45 Elapsed: 00:00:00.44
# Mc/sec: 1463.88
//
Query:       MMETSP1137-20121227|8751_1  [L=172]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (172 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       200  (0.0487567); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.16s 00:00:00.35 Elapsed: 00:00:00.48
# Mc/sec: 472.96
//
Query:       MMETSP1137-20121227|8752_1  [L=307]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (307 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       110  (0.0268162); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.14s 00:00:00.39 Elapsed: 00:00:00.38
# Mc/sec: 1066.33
//
Query:       MMETSP1137-20121227|8753_1  [L=487]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.4e-08   31.1   0.0    5.2e-08   30.0   0.0    1.4  2  TIGR00147 TIGR00147: lipid kinase, YegS/Rv2252/BmrU family
    2.8e-06   24.4   0.0    4.6e-06   23.7   0.0    1.3  1  TIGR03702 lip_kinase_YegS: lipid kinase YegS


Domain annotation for each model (and alignments):
>> TIGR00147  TIGR00147: lipid kinase, YegS/Rv2252/BmrU family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.0   0.0   2.5e-11   5.2e-08       8     102 ..     153     245 ..     148     249 .. 0.70
   2 ?   -2.9   0.0      0.26   5.3e+02     136     189 ..     305     370 ..     287     392 .. 0.54

  Alignments for each domain:
  == domain 1    score: 30.0 bits;  conditional E-value: 2.5e-11
   TIGR00147   8 lnptagkknikkalkevlkelekekvevrvklTkkkGdaaravkeaaerkvdtvivlGGDGTinevvnal..kdlddkPalgilPaGtaNDFsralg 102
                 +n t+g ++++ a+ +  ++l+ ++v     + + + da   ++  +  +  +v+v GGDGT+  v   l  + l+  P ++i+P+Gt ND +ralg
  MMETSP1137-20121227|8753_1 153 VNRTSGGRQGQTAMSQLRNLLSPHQVV-DLGQGHSAEDA---LQSFRSVGRFRVLVCGGDGTVGWVLSLLdsASLEYTPPVAIMPLGTGNDLARALG 245
                 566666666666666666666655542.23333333233...334444555689*************99944468999*****************98 PP

  == domain 2    score: -2.9 bits;  conditional E-value: 0.26
   TIGR00147 136 NiagiGfvtelttevpek.......lkalLg.kls...Yilsglealatlk.pfeleiktedeeiq 189
                 N++giG+ ++++ e   +        + +L+ k+    Y +++l  ++ +k   +l i+ +++ ++
  MMETSP1137-20121227|8753_1 305 NYLGIGVDARVALEWHRRrqsspqrFRSRLRnKVQyarYGMRHLFCSDYAKlCSQLVIEADGQLLE 370
                 677777766666665444333333344445423431113344444444444234555566655554 PP

>> TIGR03702  lip_kinase_YegS: lipid kinase YegS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.7   0.0   2.3e-09   4.6e-06      47      98 ..     193     244 ..     149     265 .. 0.86

  Alignments for each domain:
  == domain 1    score: 23.7 bits;  conditional E-value: 2.3e-09
   TIGR03702  47 ealaagvktvvagGGdGtlrevaealaearddaapalallPlGtandfataa 98 
                   ++ g   v+  GGdGt+  v + l +a+ + +p +a++PlGt nd+a+a 
  MMETSP1137-20121227|8753_1 193 SFRSVGRFRVLVCGGDGTVGWVLSLLDSASLEYTPPVAIMPLGTGNDLARAL 244
                 555667778999*************************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (487 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        67  (0.0163335); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.34u 0.18s 00:00:00.52 Elapsed: 00:00:00.37
# Mc/sec: 1737.26
//
Query:       MMETSP1137-20121227|8754_1  [L=89]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (89 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        57  (0.0138957); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.15s 00:00:00.29 Elapsed: 00:00:00.24
# Mc/sec: 489.46
//
Query:       MMETSP1137-20121227|8755_1  [L=310]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0068   13.9   0.1      0.013   13.1   0.1    1.4  1  TIGR02098 MJ0042_CXXC: MJ0042 family finger-like domain


Domain annotation for each model (and alignments):
>> TIGR02098  MJ0042_CXXC: MJ0042 family finger-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.1   0.1   3.1e-06     0.013      14      33 ..     126     145 ..     124     148 .. 0.79

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 3.1e-06
   TIGR02098  14 VddsqlginggkVRCgkCgh 33 
                 V++   ++  +kVRC++C++
  MMETSP1137-20121227|8755_1 126 VTHKPFAVELRKVRCTRCNT 145
                 55666677779*******97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (310 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       264  (0.0643588); expected 82.0 (0.02)
Passed bias filter:                      131  (0.0319356); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.29u 0.17s 00:00:00.46 Elapsed: 00:00:00.38
# Mc/sec: 1076.75
//
Query:       MMETSP1137-20121227|8756_1  [L=796]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00029   17.2   0.0    0.00047   16.5   0.0    1.2  1  TIGR01052 top6b: DNA topoisomerase VI, B subunit


Domain annotation for each model (and alignments):
>> TIGR01052  top6b: DNA topoisomerase VI, B subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0   1.1e-07   0.00047      32     173 ..     113     261 ..     103     279 .. 0.69

  Alignments for each domain:
  == domain 1    score: 16.5 bits;  conditional E-value: 1.1e-07
   TIGR01052  32 vikelvtnsldaceeaGilP.........dikveieklgkdhykvavednGpGiPeeyipkvfgklla.gsklhriiqsrGqqG...iGisgavlfsqlttGkPvkvisstk.geikakevelkidvkknegeivekkerkkkgwrGtrvelelkd 173
                  ++elv n  dac+++  l          + +v+i   +k+  ++++ednG+G+ ++ + + +gk+   g+k+       G+     iG  g+ ++s +     v+v++++  ge+       + +        ++k++    + +Gtr+ l lk+
  MMETSP1137-20121227|8756_1 113 FLRELVSNGSDACDKKRFLSltedggkayEGRVRIT-ADKESNTLTIEDNGIGMTRKDLQNNLGKIAQsGTKMFTEALGAGKDAtnlIGQFGVGFYSAFLVADKVTVVTKAAdGEQL------RWESTEASTYTISKDDSAPIEETGTRLILTLKE 261
                 589**********99988862222221113456664.467899**********************9752789987777777654344899999999999999999999988844443......344444444444444433322366666666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (796 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       196  (0.0477816); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.15s 00:00:00.66 Elapsed: 00:00:00.67
# Mc/sec: 1568.11
//
Query:       MMETSP1137-20121227|8757_1  [L=68]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (68 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        31  (0.00755729); expected 82.0 (0.02)
Passed bias filter:                       31  (0.00755729); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.14s 00:00:00.28 Elapsed: 00:00:00.28
# Mc/sec: 320.54
//
Query:       MMETSP1137-20121227|8759_1  [L=834]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0048   12.8   0.1      0.039    9.8   0.0    2.0  2  TIGR00870 trp: transient-receptor-potential calcium channel protein


Domain annotation for each model (and alignments):
>> TIGR00870  trp: transient-receptor-potential calcium channel protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.8   0.0   9.5e-06     0.039     129     218 ..     391     490 ..     374     500 .. 0.90
   2 !    0.3   0.0     0.007        29     178     213 ..     659     694 ..     572     700 .. 0.68

  Alignments for each domain:
  == domain 1    score: 9.8 bits;  conditional E-value: 9.5e-06
   TIGR00870 129 tkgitalilAihkqnyeivklLlekgasve............arakgdefvksqekdslyhgespLnlaaclasesivsllsedpAdiltadslgntllhll 218
                  +g t +  A++ +n+ +v++Llekg  v             +r  g+  v++    ++  g   L   +  ++e +++ll +++Ad++ +d +g t+lh +
  MMETSP1137-20121227|8759_1 391 EAGFTLMRYAVMSDNLVVVRALLEKGEVVDlsqplvkddkvsMRSRGSTLVHEAA-RCFDGGAQSLV-QKYGSAETMLELLHRFGADLSERDAIGCTVLHYA 490
                 567788888*****************999999******************99999.9***9999885.455567889***********************76 PP

  == domain 2    score: 0.3 bits;  conditional E-value: 0.007
   TIGR00870 178 gespLnlaaclasesivsllsedpAdiltadslgnt 213
                 g  pL+ aa  +  ++ +ll+  +Ad+  +   g+t
  MMETSP1137-20121227|8759_1 659 GGTPLSNAARYGHRAVCDLLISAGADPTCRCASGWT 694
                 6689************************99999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (834 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        92  (0.0224281); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.16s 00:00:00.67 Elapsed: 00:00:00.68
# Mc/sec: 1618.81
//
Query:       MMETSP1137-20121227|8760_1  [L=261]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.1e-53  179.8   0.0    1.4e-53  179.3   0.0    1.1  1  TIGR00493 clpP: ATP-dependent Clp protease, proteolytic subunit ClpP


Domain annotation for each model (and alignments):
>> TIGR00493  clpP: ATP-dependent Clp protease, proteolytic subunit ClpP
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  179.3   0.0   3.5e-57   1.4e-53      19     191 ..      67     246 ..      62     247 .. 0.95

  Alignments for each domain:
  == domain 1    score: 179.3 bits;  conditional E-value: 3.5e-57
   TIGR00493  19 diysrllkeriillsgevedevansivaqllfleaedpekdislyinspGGsitaG.......laiydtmqfikpdvsticiGlaasmGafllaaGakGkrlalpnsrimihqplGGaqGqasdieiqakeilklkkklnellaektGqslekiekdterdfflsaeeakeyGlidkvlt 191
                 d+ s ll++ri++ +  +  +v++++va+ll+l+ e ++k +++yinspG s + G       +ai dtm++i p++ ticiG+a    a+lla G+kG r++lpn+ i++hqp   a+Gqasdi+i+a+e+l+ ++++n++laektGq+lek++ d  r ++ s e+a+eyG+idkvl 
  MMETSP1137-20121227|8760_1  67 DLPSLLLNNRIVYCGLPLVPSVTELMVAELLYLNYESNDKPVYMYINSPGTSTANGqafeteaFAIADTMNYIGPEIETICIGQAFGTAAMLLANGKKGSRACLPNASILLHQPRSRARGQASDIKIKAREVLTARNTINSMLAEKTGQTLEKVTMDSSRTKYFSPEQAMEYGIIDKVLR 246
                 67799***********************************************98874444444689****************************************************************************************************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (261 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       109  (0.0265724); expected 82.0 (0.02)
Passed bias filter:                      105  (0.0255973); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.22u 0.12s 00:00:00.34 Elapsed: 00:00:00.62
# Mc/sec: 555.63
//
Query:       MMETSP1137-20121227|8761_1  [L=232]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (232 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        67  (0.0163335); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.16s 00:00:00.37 Elapsed: 00:00:00.30
# Mc/sec: 1020.72
//
Query:       MMETSP1137-20121227|8762_1  [L=113]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (113 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        72  (0.0175524); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.14s 00:00:00.31 Elapsed: 00:00:00.47
# Mc/sec: 317.34
//
Query:       MMETSP1137-20121227|8764_1  [L=432]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (432 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        48  (0.0117016); expected 82.0 (0.02)
Passed bias filter:                       44  (0.0107265); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.13s 00:00:00.42 Elapsed: 00:00:00.48
# Mc/sec: 1187.90
//
Query:       MMETSP1137-20121227|8765_1  [L=375]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.9e-06   23.4  11.7    1.9e-05   22.3   7.6    2.0  1  TIGR00803 nst: UDP-galactose transporter


Domain annotation for each model (and alignments):
>> TIGR00803  nst: UDP-galactose transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.3   7.6   4.6e-09   1.9e-05      51     222 .]     136     295 ..      91     295 .. 0.81

  Alignments for each domain:
  == domain 1    score: 22.3 bits;  conditional E-value: 4.6e-09
   TIGR00803  51 gdkqwfslkllklgvaivqlvqssaktlsegnlvvglsavlsallssglagvyfekilkdkdtsfyvrnlqlplfgllvtfvvll.lsdgslisnkgffigyttavwivvllnvvgglcvglvvkyadnttksivlalsiilslllsvrlfdaklsltfalgvilvflatllY 222
                  + qw+ + + + ++ai+q +  +++ + +     +l+a+++++      +v +++++k +d  +  +n  +++fg l  +v+ +  s++    +kgff gy+           + g+ v+ v kyad ++k+++++    ++ ++s ++f+ + +l + lg+++v ++t+ Y
  MMETSP1137-20121227|8765_1 136 NKLQWVCVIIQCCAIAIIQYDICKNRGVLP-HRAYLLIAISTSI--TAVTSVWNQLVIKGFDVPVNLQNAIMYFFGSLI-AVGFYvQSVVDGGETKGFFEGYA---------PLFHGIAVAYVYKYADAIVKNFAASSVVAFLFVISAYFFEQPTNLHSWLGIVIVLVTTYCY 295
                 467999999999999999999887544444.4455566666664..55678999************************9.55544045555566666666665.........5789******************************************************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (375 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       155  (0.0377864); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.28u 0.15s 00:00:00.43 Elapsed: 00:00:00.44
# Mc/sec: 1124.91
//
Query:       MMETSP1137-20121227|8766_1  [L=295]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.6e-12   43.6   0.1    6.2e-12   43.2   0.1    1.1  1  TIGR01169 rplA_bact: ribosomal protein L1


Domain annotation for each model (and alignments):
>> TIGR01169  rplA_bact: ribosomal protein L1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.2   0.1   1.5e-15   6.2e-12      30     219 ..     100     291 ..      86     295 .] 0.77

  Alignments for each domain:
  == domain 1    score: 43.2 bits;  conditional E-value: 1.5e-15
   TIGR01169  30 elstakfdetvevaikl.gvdprksdqqvRgsvvLPngtgksvrvlvfakgekaeeAkeaGAdlvGsedlie..k....ikkgeldfDvviatpdmmkkvgklgkvLGprgLmPnpktgtv...tadvakavkelkkGkvefradkagiihvsigkvsfeeeklkenlealle...aikkakPsaaKgkylkkialsstmgpg 219
                 e ++  f et+e++i l + dp+k d+   g + LP+  + ++rv v+ +  + e+A++ G d+  ++ l +  k    ikk   ++   +a+  ++k++ +   +LGp gL    k  t+    +d+ + v elk+  v+f+  k   ++v++g+  + +++++en++  l+   ++ k+  +++K  y+k     stmg  
  MMETSP1137-20121227|8766_1 100 EEKKREFLETIELQIGLkNYDPQK-DKRFAGNIKLPHIPRPKMRVCVLGDAFHCEKAASLGLDFKNADGLKNfnKnkklIKKFAKKYHQFLASESLIKQIPR---LLGP-GLNKAGKFPTLvqqQDDLSAKVDELKA-TVKFQLKKVLCLNVAVGHCGMTDAQVVENIKLSLNflvSLLKKNWQNVKVLYIK-----STMGKP 291
                 567889**********94578888.*************************************998776654321123347888899999****999887765...5666.666666666651114689999***997.7*****************************976551115556666666666665.....566655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (295 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       149  (0.0363237); expected 82.0 (0.02)
Passed bias filter:                      106  (0.0258411); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.28u 0.15s 00:00:00.43 Elapsed: 00:00:00.46
# Mc/sec: 846.45
//
Query:       MMETSP1137-20121227|8767_1  [L=335]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.023   12.3   3.7       0.03   11.9   0.5    2.0  2  TIGR02182 GRXB: glutaredoxin, GrxB family
       0.12    7.8  36.0       0.23    6.9  17.5    2.0  2  TIGR02168 SMC_prok_B: chromosome segregation protein SMC


Domain annotation for each model (and alignments):
>> TIGR02182  GRXB: glutaredoxin, GrxB family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.1     0.034        71     133     179 ..      54     100 ..      43     110 .. 0.82
   2 ?   11.9   0.5   1.4e-05      0.03      32     159 ..     148     280 ..     133     291 .. 0.75

  Alignments for each domain:
  == domain 1    score: 0.9 bits;  conditional E-value: 0.034
   TIGR02182 133 sallneteslleeieadleeleklldeesavngelsvddilvfplLR 179
                 sa  ne e+l e++e  l +l++ + +++a++ + +    +++ l R
  MMETSP1137-20121227|8767_1  54 SAXCNEEETLDERVEGALLALNEAIAQNNAMQASYTNAAQTLYELQR 100
                 677899999********************999887776666666655 PP

  == domain 2    score: 11.9 bits;  conditional E-value: 1.4e-05
   TIGR02182  32 nDdeetpirliG.kkqvPiLqkeDgralaeslDivkyidelag..eslltdkvseeieewlekvtsylnkll.lPRlakldlee.fatqsarkyftkkkeasvgnfsallneteslleeieadleelekllde 159
                  ++e+t+ + +G +kq+      D     e++ +vk   +     +    +k s e +++ ++v  +++k+l +   + +++e+     s ++ +++k++++ +++ ++l+ +e+  +++ + ++ le++ +e
  MMETSP1137-20121227|8767_1 148 SEEEATADEALGvQKQLRETMSRDDAXGWEAMKVVKQQLRARRdsARARVSKLSSEQRHYSNEVSRLTEKVLsMSYXIGSAFENaLPFLSVKQSYIEKQQEQHLELVQQLERAEEAKARVRDAMRTLEEISME 280
                 45556666666646777655555556667999999875543331255566788889999999**99999876255667777876245568999*********************************9998655 PP

>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9  17.5   0.00011      0.23     737     961 ..      15     239 ..      11     250 .. 0.72
   2 ?    3.3   5.1    0.0013       2.8     280     346 ..     240     306 ..     228     324 .. 0.60

  Alignments for each domain:
  == domain 1    score: 6.9 bits;  conditional E-value: 0.00011
   TIGR02168 737 lerlekeveqleerlaqlekeleeleeereeleeeleeaeeelkeaeeeieeleaeieqlkeelkalrealseleaeltelkeeaaekeerleslekeiaalekeleeleeqieeleeeiesleaeieeleeeleeleeeleellkekasleeala.elreeleelseelrelekkvkelereleelreklaqlelrleeleveiaelqerlseeyeleleeaeel 961
                 + r + +++q+ e+ ++ + +++e +e  ++ ++ l e+++  +e e+  e++e  + +l+e++++++++ ++  +++++l e  + +e++le+l++++  + +e+ + e++++e +  +++l++    l  + ee  ++ e+l  +k +l+e ++       e+++   ++l+ +++ +++++++l +++ ++++++++l+ ++ ++   + + +e  l  ++ +
  MMETSP1137-20121227|8767_1  15 AGRSRLSQQQHDEDSTRVSPNQNEGNEDVTAWRASLVEESAXCNEEETLDERVEGALLALNEAIAQNNAMQASYTNAAQTLYELQRAAESELEDLKHRHWLWIDEIATFESNKREIKVAAAELSRISHALLVASEEEATADEALGVQK-QLRETMSrDDAXGWEAMKVVKQQLRARRDSARARVSKLSSEQRHYSNEVSRLTEKVLSMSYXIGSAFENALPFLSVK 239
                 5677788999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999998888877777776666666555555554333333333333333.33333330333444555556666777777777788888888888888888877777776666666665555555555 PP

  == domain 2    score: 3.3 bits;  conditional E-value: 0.0013
   TIGR02168 280 eeeleelqkelqelkaeisrleqeieilkerleqlekeleeleeqleeleskkeeleeelaeleeel 346
                 ++ +e++q++  el ++++r e+ +++ ++ ++ le+ + e++eq+++++s++  + +++++ e+ +
  MMETSP1137-20121227|8767_1 240 QSYIEKQQEQHLELVQQLERAEEAKARVRDAMRTLEEISMEIHEQRRRKDSSRSSEDADADDCEASF 306
                 4445556666666666666666666666666666666666666666666555555555555555444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (335 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       381  (0.0928815); expected 82.0 (0.02)
Passed bias filter:                      108  (0.0263286); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.14s 00:00:00.52 Elapsed: 00:00:00.62
# Mc/sec: 713.17
//
Query:       MMETSP1137-20121227|8768_1  [L=180]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (180 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       142  (0.0346173); expected 82.0 (0.02)
Passed bias filter:                      116  (0.0282789); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.13s 00:00:00.31 Elapsed: 00:00:00.32
# Mc/sec: 742.44
//
Query:       MMETSP1137-20121227|8769_1  [L=660]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.8e-08   31.3   0.0    7.1e-08   30.4   0.0    1.4  1  TIGR02613 mob_myst_B: mobile mystery protein B
     0.0065   14.5   0.0      0.019   13.0   0.0    1.7  1  TIGR01550 DOC_P1: death-on-curing family protein


Domain annotation for each model (and alignments):
>> TIGR02613  mob_myst_B: mobile mystery protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.4   0.0   3.4e-11   7.1e-08      82     170 ..     251     335 ..     207     347 .. 0.77

  Alignments for each domain:
  == domain 1    score: 30.4 bits;  conditional E-value: 3.4e-11
   TIGR02613  82 salqipvelavllddvrywvqketyaadeiavrfhhrlvaihPfanGnGrharlladlllekllaepftwgsgslakvgdlrkeyiaal 170
                  a+++   l++++d +++  ++e   a  +a   h  lv ihPf++GnGr ar+l++  l+k ++ pft    s+ + ++ r+ y++a+
  MMETSP1137-20121227|8769_1 251 PAAEVAHALKQFVDSLNALSEREELDALGLAAAAHVGLVSIHPFSDGNGRLARILCNWALRKRGV-PFTI---SMCSTDEQRQLYVRAV 335
                 3567888999999999999999***************************************9997.4554...5667788888888875 PP

>> TIGR01550  DOC_P1: death-on-curing family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   0.0   9.1e-06     0.019      45      94 ..     271     320 ..     252     339 .. 0.82

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 9.1e-06
   TIGR01550  45 yeesddlfelsAvllikliksHvFvnaNKRtalsalllflelngyeltas 94 
                   e  d   l+A+  + l+  H+F ++N R a  + +  l+  g+ +t s
  MMETSP1137-20121227|8769_1 271 EREELDALGLAAAAHVGLVSIHPFSDGNGRLARILCNWALRKRGVPFTIS 320
                 444466677899999**************************999999854 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (660 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       145  (0.0353486); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.18s 00:00:00.60 Elapsed: 00:00:00.68
# Mc/sec: 1281.07
//
Query:       MMETSP1137-20121227|8771_1  [L=414]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (414 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        89  (0.0216967); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.17s 00:00:00.48 Elapsed: 00:00:00.49
# Mc/sec: 1115.17
//
Query:       MMETSP1137-20121227|8772_1  [L=230]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (230 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        89  (0.0216967); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.17s 00:00:00.37 Elapsed: 00:00:00.34
# Mc/sec: 892.87
//
Query:       MMETSP1137-20121227|8773_1  [L=664]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (664 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       176  (0.0429059); expected 82.0 (0.02)
Passed bias filter:                      146  (0.0355924); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.13s 00:00:00.59 Elapsed: 00:00:00.59
# Mc/sec: 1485.44
//
Query:       MMETSP1137-20121227|8774_1  [L=651]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (651 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       241  (0.0587518); expected 82.0 (0.02)
Passed bias filter:                      128  (0.0312043); expected 82.0 (0.02)
Passed Vit filter:                        20  (0.00487567); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.50u 0.18s 00:00:00.68 Elapsed: 00:00:00.49
# Mc/sec: 1753.57
//
Query:       MMETSP1137-20121227|8776_1  [L=395]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (395 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        59  (0.0143832); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.17s 00:00:00.46 Elapsed: 00:00:00.46
# Mc/sec: 1133.38
//
Query:       MMETSP1137-20121227|8777_1  [L=264]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (264 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       147  (0.0358362); expected 82.0 (0.02)
Passed bias filter:                      131  (0.0319356); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.18s 00:00:00.41 Elapsed: 00:00:00.52
# Mc/sec: 670.10
//
Query:       MMETSP1137-20121227|8778_1  [L=297]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (297 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       245  (0.059727); expected 82.0 (0.02)
Passed bias filter:                      118  (0.0287665); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.17s 00:00:00.44 Elapsed: 00:00:00.44
# Mc/sec: 890.93
//
Query:       MMETSP1137-20121227|8779_1  [L=141]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (141 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        63  (0.0153584); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.11s 00:00:00.27 Elapsed: 00:00:00.40
# Mc/sec: 465.26
//
Query:       MMETSP1137-20121227|8780_1  [L=224]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.9e-16   58.4   0.1    3.5e-16   57.5   0.1    1.4  1  TIGR01416 Rieske_proteo: ubiquinol-cytochrome c reductase, iron-sulfur subunit
    1.1e-05   23.2   0.1    1.7e-05   22.6   0.0    1.3  1  TIGR02694 arsenite_ox_S: arsenite oxidase, small subunit
  ------ inclusion threshold ------
      0.014   12.1   0.0      0.019   11.6   0.0    1.1  1  TIGR03229 benzo_1_2_benA: benzoate 1,2-dioxygenase, large subunit
       0.21    8.3   3.8        3.4    4.3   0.0    2.7  3  TIGR03171 soxL2: Rieske iron-sulfur protein SoxL2


Domain annotation for each model (and alignments):
>> TIGR01416  Rieske_proteo: ubiquinol-cytochrome c reductase, iron-sulfur subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.5   0.1   3.4e-19   3.5e-16     108     162 ..     145     195 ..     122     207 .. 0.80

  Alignments for each domain:
  == domain 1    score: 57.5 bits;  conditional E-value: 3.4e-19
   TIGR01416 108 ewlvvigiCtHLGCiPtlkpeegdkggffCpCHgskydlagrvvkgvPaPenlav 162
                 e + + ++CtHLGC+  ++  + +   + CpCHgs+yd++g+v++g PaP  la+
  MMETSP1137-20121227|8780_1 145 ENYAINAVCTHLGCVVPWNRAQLK---YICPCHGSQYDATGKVIRG-PAPLSLAL 195
                 3447789*******9778855555...*******************.****9986 PP

>> TIGR02694  arsenite_ox_S: arsenite oxidase, small subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.6   0.0   1.7e-08   1.7e-05      53      92 ..     148     185 ..     117     198 .. 0.85

  Alignments for each domain:
  == domain 1    score: 22.6 bits;  conditional E-value: 1.7e-08
   TIGR02694  53 afsilcthkGcpvsyeadaktfkcpchfsvfdpekaGqqv 92 
                 a  ++cth Gc v ++  + +++cpch s +d   +G+ +
  MMETSP1137-20121227|8780_1 148 AINAVCTHLGCVVPWNRAQLKYICPCHGSQYDA--TGKVI 185
                 5678**************************996..45555 PP

>> TIGR03229  benzo_1_2_benA: benzoate 1,2-dioxygenase, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   1.9e-05     0.019      66     133 ..     137     203 ..     128     210 .. 0.74

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 1.9e-05
   TIGR03229  66 iarnkdgelnalina.cshrgamlcrhkrgnkatytcpfhgwtfnnsgkllkvkdpedagypesfnkdg 133
                 i ++ ++  n  ina c+h g+++  ++   +  y cp hg  ++ +gk+++   p + + +++ + dg
  MMETSP1137-20121227|8780_1 137 IVKQDKSLENYAINAvCTHLGCVVPWNRA--QLKYICPCHGSQYDATGKVIRGPAPLSLALAHCDDVDG 203
                 4444444445666655*****99987665..567****************9987777777777777666 PP

>> TIGR03171  soxL2: Rieske iron-sulfur protein SoxL2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.0     0.064        66      60     124 ..      57     120 ..      54     150 .. 0.65
   2 ?    4.3   0.0    0.0034       3.4     176     194 ..     142     162 ..     132     166 .. 0.76
   3 ?    3.7   0.2    0.0052       5.3     234     255 ..     170     189 ..     165     202 .. 0.78

  Alignments for each domain:
  == domain 1    score: 0.1 bits;  conditional E-value: 0.064
   TIGR03171  60 dekrrkflkglilgiaaaavvgiipg.lkvlvppevaavsgfpksllvdssgnpikaseipvnspi 124
                 d +rr +++ +++g a   v  +  g +  lvpp  + v g    +  d+ gn +k++      p+
  MMETSP1137-20121227|8780_1  57 DMQRRTIMNLVLVGGAGVPVLWLAGGfVYFLVPP--SGVGGGAGLIAKDALGNDVKTAPWTEAHPY 120
                 5678888888888888888888888844578888..455666666667777888877766655555 PP

  == domain 2    score: 4.3 bits;  conditional E-value: 0.0034
   TIGR03171 176 ksivay..saicqhlgctppy 194
                 ks+  y   a+c hlgc  p+
  MMETSP1137-20121227|8780_1 142 KSLENYaiNAVCTHLGCVVPW 162
                 5555552269*******9986 PP

  == domain 3    score: 3.7 bits;  conditional E-value: 0.0052
   TIGR03171 234 hcdchgstydpykgaavltgpt 255
                  c chgs yd    + v+ gp+
  MMETSP1137-20121227|8780_1 170 ICPCHGSQYDAT--GKVIRGPA 189
                 59********74..56778876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (224 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        97  (0.023647); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.24u 0.18s 00:00:00.42 Elapsed: 00:00:00.35
# Mc/sec: 844.73
//
Query:       MMETSP1137-20121227|8781_1  [L=798]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.5e-35  119.0   0.2    8.4e-16   55.4   0.0    3.0  3  TIGR03377 glycerol3P_GlpA: glycerol-3-phosphate dehydrogenase, anaerobic, A subunit
    7.3e-28   95.5   0.0    8.3e-23   78.8   0.0    2.5  2  TIGR02352 thiamin_ThiO: glycine oxidase ThiO
    9.1e-18   62.3   0.0    5.2e-16   56.5   0.0    2.2  2  TIGR03364 HpnW_proposed: FAD dependent oxidoreductase TIGR03364
    1.9e-13   48.1   0.0    3.2e-13   47.3   0.0    1.3  1  TIGR03197 MnmC_Cterm: tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain
    1.6e-08   31.6   0.0    2.4e-08   31.0   0.0    1.2  1  TIGR01377 soxA_mon: sarcosine oxidase, monomeric form
    2.3e-05   22.1   5.0     0.0007   17.2   1.4    2.8  3  TIGR02032 GG-red-SF: geranylgeranyl reductase family
     0.0002   18.2   0.1     0.0027   14.4   0.0    2.1  2  TIGR01373 soxB: sarcosine oxidase, beta subunit family
    0.00029   17.9   0.1    0.00054   17.0   0.0    1.6  2  TIGR01790 carotene-cycl: lycopene cyclase family protein
    0.00065   16.4   0.9    0.00095   15.9   0.6    1.2  1  TIGR01988 Ubi-OHases: ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family
     0.0012   15.7   0.2     0.0012   15.7   0.2    1.4  2  TIGR02023 BchP-ChlP: geranylgeranyl reductase
     0.0012   15.5   0.5     0.0018   15.0   0.3    1.2  1  TIGR01438 TGR: thioredoxin and glutathione reductase
      0.002   15.3   2.2      0.004   14.3   1.6    1.5  1  TIGR03467 HpnE: squalene-associated FAD-dependent desaturase
     0.0063   13.2   1.6       0.23    8.0   1.0    2.3  2  TIGR00275 TIGR00275: flavoprotein, HI0933 family
     0.0065   13.0   0.2       0.01   12.3   0.1    1.2  1  TIGR03219 salicylate_mono: salicylate 1-monooxygenase
     0.0071   12.9   0.1      0.011   12.3   0.1    1.3  1  TIGR03026 NDP-sugDHase: nucleotide sugar dehydrogenase
     0.0074   12.9   0.2      0.011   12.3   0.1    1.2  1  TIGR01316 gltA: glutamate synthase (NADPH), homotetrameric
     0.0082   12.6   0.1      0.012   12.1   0.1    1.2  1  TIGR00562 proto_IX_ox: protoporphyrinogen oxidase
     0.0091   12.6   1.3       0.11    9.1   0.6    2.3  2  TIGR03329 Phn_aa_oxid: putative aminophosphonate oxidoreductase
  ------ inclusion threshold ------
      0.015   12.4   1.5       0.02   12.0   0.4    1.6  2  TIGR00292 TIGR00292: thiazole biosynthesis enzyme
      0.015   11.9   0.2      0.023   11.3   0.2    1.2  1  TIGR01984 UbiH: 2-polyprenyl-6-methoxyphenol 4-hydroxylase
      0.027   10.7   0.6      0.049    9.8   0.4    1.3  1  TIGR02374 nitri_red_nirB: nitrite reductase [NAD(P)H], large subunit
      0.075    9.8   0.4       0.11    9.2   0.3    1.2  1  TIGR01989 COQ6: ubiquinone biosynthesis monooxygenase COQ6


Domain annotation for each model (and alignments):
>> TIGR03377  glycerol3P_GlpA: glycerol-3-phosphate dehydrogenase, anaerobic, A subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.4   0.0   4.5e-18   8.4e-16       1     182 [.      94     280 ..      94     294 .. 0.89
   2 !   17.4   0.0   1.4e-06   0.00026     187     305 ..     341     469 ..     313     478 .. 0.84
   3 !   42.6   0.1   3.4e-14   6.3e-12     416     478 ..     564     631 ..     546     673 .. 0.83

  Alignments for each domain:
  == domain 1    score: 55.4 bits;  conditional E-value: 4.5e-18
   TIGR03377   1 dvvviGGGatGaGilRDlalRglkvvLlek.kdlasGttgRnhGLLhsGaRYavkDqesareCieenkilkkiakh...cveetgGlFiklpeDdleyqkkfleaceeagiea.eeldpeealrlePalnkelikavkvpD.gtvDpfrlvaanvldakehGariltytkvvgliregdrvtgvkved 182
                 dv ++GGG  Ga i+R+la    +vvL e  +d+++G+t  n G++h+G       +  a+ C + n++  ++ ++     + tg l + +  +++++ ++ l++ e+ g++  + +  ee++ +eP+l ++ + a+  pD gt+ p+  ++a + +a ++G +++  ++v  + +++d +  ++ ++
  MMETSP1137-20121227|8781_1  94 DVAIVGGGCIGAAIARELAKTDASVVLFEAaDDVSQGATKGNSGIVHAGYDD-TPGTMRAKLCWKGNQMFPDLDRElhfGYQLTGSLVVARGAEEEKHLHELLARGETNGVKNlRIVXKEELRLMEPNLDDACTAALFSPDaGTLTPYEYTIALAENAADNGVEMRIRREVQAISKSDDGLFNIEXNH 280
                 799**************************7368**************99543.345678**********8887764222689999**************************86155677889999***************9569*********************************99998888765 PP

  == domain 2    score: 17.4 bits;  conditional E-value: 1.4e-06
   TIGR03377 187 eeeeieaevvvnaaGaWaqeiaeladl.kielvpakGvllvlnhR...lnnkvinRlrkpsdaDilvPgd..tisllGttsekv...ddiddleveqeev.delldegakliPalaeaRilrafaGvRP 305
                  +e+++a++vvn aG  ++++a++ +  + e+ p  G  ++l++    + n+++  +  p    ilv +      +lG t+++v    d+ +  +++e+v +++l + ++l+P +++  + ++faG+R 
  MMETSP1137-20121227|8781_1 341 DKESVRARYVVNCAGGASDRLAKMIGDdSFEIKPRLGEYVLLKKTsgdQCNHILFPCPGPLGKGILVQKTlwGNLILGPTARDVhewADPGTDPETREQVlQKILASCRRLVPGFNTDDAFQSFAGARA 469
                 57899******************9876489*******99999875233789999*************887223579********76656666666666653889***********************95 PP

  == domain 3    score: 42.6 bits;  conditional E-value: 3.4e-14
   TIGR03377 416 kkkdkqviCeCeavtaaevedaie.eldvenledlrrrtRlgmGtCqge....lCalRaagllseegl 478
                  + +++++C+Ce+vt+ae+ +a + +l v++ + +r+rtR+gmG Cqg+     C +R+a+++++e+ 
  MMETSP1137-20121227|8781_1 564 VAPEQNIVCKCEKVTEAEIVEACRrSLPVDSTQGMRKRTRAGMGGCQGKpwnyGCECRVAQIIAREQS 631
                 566899************99998626799*******************844435******99998854 PP

>> TIGR02352  thiamin_ThiO: glycine oxidase ThiO
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.8   0.0   4.5e-25   8.3e-23       1     183 [.      95     272 ..      95     285 .. 0.93
   2 !   13.9   0.0   2.5e-05    0.0046     188     349 ..     339     514 ..     318     516 .. 0.74

  Alignments for each domain:
  == domain 1    score: 78.8 bits;  conditional E-value: 4.5e-25
   TIGR02352   1 vlviGgGviGlsvAveLakrghkvtllekd.evgsgAskaAaGmLapvaEveiaeeal.lrLaleSlrlypelleelkeltgldveykeeGilvvaadeddaeklreladlqsktg.leleslskealrelePelseeirgavflpedaqvdprellkaLvkaleklGveiieevevqeieargek 183
                 v+++GgG iG ++A eLak +++v l+e + +v +gA+k   G+  + ++    ++++  +L+ +  +++p+l +el      +++y+  G+lvva  ++++++l el +  +++g ++l+++ ke+lr +eP+l +   +a+f p+ + + p+e++ aL++++++ Gve++ + evq+i ++ + 
  MMETSP1137-20121227|8781_1  95 VAIVGGGCIGAAIARELAKTDASVVLFEAAdDVSQGATKGNSGIVHAGYDDT--PGTMrAKLCWKGNQMFPDLDREL------HFGYQLTGSLVVARGAEEEKHLHELLARGETNGvKNLRIVXKEELRLMEPNLDDACTAALFSPDAGTLTPYEYTIALAENAADNGVEMRIRREVQAISKSDDG 272
                 79**************************9989************87777765..6666379*************999......9********************************99******************************************************999***99988765 PP

  == domain 2    score: 13.9 bits;  conditional E-value: 2.5e-05
   TIGR02352 188 ktssekvqadqvvlaaGawakellp......lalrpvkgeilrlevpa.ekllnrpvravvyqrqvYivPre.dgrlvvGAtsees......gfdttvtlegvkeLledaievlPalkeaelletwaGlRPatpDnlPllgeheederlliatGhyRnGiLLaPataevvadliek 349
                 + ++e+v a +vv +aG ++ +l +      + ++p  ge + l+ ++ ++ ++ +     +  +  +v ++  g+l+ G t ++       g d +++++ ++++l    +++P+++  + ++  aG R  + ++  ++ + e d   ++a+G    Gi  +Pa a +v+dl+e+
  MMETSP1137-20121227|8781_1 339 VVDKESVRARYVVNCAGGASDRLAKmigddsFEIKPRLGEYVLLKKTSgDQCNHILFPCPGPLGKGILVQKTlWGNLILGPTARDVhewadpGTDPETREQVLQKILASCRRLVPGFNTDDAFQSFAGARAKSTEGDWIIRPSEADADFILAAGIDSPGIAGSPAIALEVVDLLEQ 514
                 555666777777777777766666666666655666666666666655233333333444455566666665347778887776532111125577889999***********************************************************************987 PP

>> TIGR03364  HpnW_proposed: FAD dependent oxidoreductase TIGR03364
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.5   0.0   2.8e-18   5.2e-16       1     175 [.      93     269 ..      93     279 .. 0.90
   2 ?    3.6   0.0     0.033       6.1     271     363 ..     405     505 ..     400     507 .. 0.86

  Alignments for each domain:
  == domain 1    score: 56.5 bits;  conditional E-value: 2.8e-18
   TIGR03364   1 tdvvvvGaGivGlahAlaaarrGlkVtvierssr.aaGAsvrNFGqvvvt.gqaageale.larrsreiwlelaekaglsvrenGslvlarteeelavleefaavreeae.ysvelLspaevaaklpalrldgllgglhladelrvepreaipalaeyLaeekgveflwntavtevets 175
                 +dv++vG+G +G a+A + a+   +V+++e ++   +GA+  N G v      ++g++ + l  ++ +++ +l ++ ++  + +Gslv+ar +ee++ l+e+ a  e +  ++ ++  ++e++   p +  d ++++l+++d  ++ p e   alae  a++ gve++++ +v+++++s
  MMETSP1137-20121227|8781_1  93 YDVAIVGGGCIGAAIARELAKTDASVVLFEAADDvSQGATKGNSGIVHAGyDDTPGTMRAkLCWKGNQMFPDLDRELHFGYQLTGSLVVARGAEEEKHLHELLARGETNGvKNLRIVXKEELRLMEP-NLDDACTAALFSPDAGTLTPYEYTIALAENAADN-GVEMRIRREVQAISKS 269
                 79****************************8765279********9986413456777766899******************************999999999888888768899999999999999.8899*************************98887.***********99765 PP

  == domain 2    score: 3.6 bits;  conditional E-value: 0.033
   TIGR03364 271 llvsqeedGeliiG....DsHeyea.aaepFddeevdelllaeakeil.glkelevverWqGvYasskeaeilve..eiddgvtvvvvtsGvGmtlsfgla 363
                 +lv+++  G+li+G    D He+++  ++p  +e+v + +la  ++++ g+++ +  ++ +G  a+s+e + +++  e+d+   ++ ++   G++ s+++a
  MMETSP1137-20121227|8781_1 405 ILVQKTLWGNLILGptarDVHEWADpGTDPETREQVLQKILASCRRLVpGFNTDDAFQSFAGARAKSTEGDWIIRpsEADADFILAAGIDSPGIAGSPAIA 505
                 78999999******888899**9762578899**********999987689999**************999999855677788888888899999999987 PP

>> TIGR03197  MnmC_Cterm: tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.3   0.0   1.7e-15   3.2e-13       1     181 [.      94     275 ..      94     282 .. 0.81

  Alignments for each domain:
  == domain 1    score: 47.3 bits;  conditional E-value: 1.7e-15
   TIGR03197   1 kvavIGaGiAgaalalsLarrGvqvtllekdeklaqgASgnrqGalypllsaddna.lsrfllaaflyarrlleqlaeagvefdhelcgvlqlavdekeaerlqklleqlklp.eellravdaeeaselagiel...pkgglffpqggwlsPpelvkallakaki.elklhfnteitslerdaeg.Wq 181
                 +va++G+G  gaa+a +La+  ++v l+e+++++ qgA   ++G++++  +++     +++  ++    ++++  l +++ +f  +l+g l +a+ ++e++ l++ll++ + +  + lr v +ee  +l++ +l    ++ lf p +g l P e++ al+++a++ ++++++++e+++++++++g + 
  MMETSP1137-20121227|8781_1  94 DVAIVGGGCIGAAIARELAKTDASVVLFEAADDVSQGATKGNSGIVHAGYDDTPGTmRAKLCWKG----NQMFPDL-DRELHFGYQLTGSLVVARGAEEEKHLHELLARGETNgVKNLRIVXKEEL-RLMEPNLddaCTAALFSPDAGTLTPYEYTIALAENAADnGVEMRIRREVQAISKSDDGlFN 275
                 69*********************************************987765543044555555....5555555.333579************************9777641355666666665.445555533246789**********************99***************9988554 PP

>> TIGR01377  soxA_mon: sarcosine oxidase, monomeric form
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.0   0.0   1.3e-10   2.4e-08       1     175 [.      93     270 ..      93     280 .. 0.84

  Alignments for each domain:
  == domain 1    score: 31.0 bits;  conditional E-value: 1.3e-10
   TIGR01377   1 fDvivvGaGvmGsaaayqLakrgkkvLLleqfdlphsrGsshGesriirkayped...fyvsmvkeatelWaelekeagtklhrqtellll..Gpkenqslkevvatlskhgleh.elleskelkerfanielpenevglldelgGvlyaekalralqelaealGaivrdgtkvveikrde 175
                 +Dv +vG G  G+a a +Lak   +v+L e  d   s+G+  G+s i+ + y +    +  ++  + ++++ +l++e +      t+ l++  G++e+++l+e++a  + +g++  +++  +el+   +n++      +l+ + +G l +++   al e a + G  +r   +v+ i +++
  MMETSP1137-20121227|8781_1  93 YDVAIVGGGCIGAAIARELAKTDASVVLFEAADDV-SQGATKGNSGIVHAGYDDTpgtMRAKLCWKGNQMFPDLDRELHFGYQL-TGSLVVarGAEEEKHLHELLARGETNGVKNlRIVXKEELRLMEPNLD-DACTAALFSPDAGTLTPYEYTIALAENAADNGVEMRIRREVQAISKSD 270
                 8******************************9975.89**************98733355667778899********9987544.4444432399999***************7637888888887777776.3456899*************************9999999999997753 PP

>> TIGR02032  GG-red-SF: geranylgeranyl reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   1.4   3.7e-06    0.0007       1      33 [.      93     125 ..      93     139 .. 0.94
   2 ?   -0.9   0.0       1.2   2.2e+02      94     121 ..     243     270 ..     205     285 .. 0.83
   3 ?    4.0   0.0     0.039       7.3      20      56 ..     331     369 ..     326     390 .. 0.79

  Alignments for each domain:
  == domain 1    score: 17.2 bits;  conditional E-value: 3.7e-06
   TIGR02032   1 yDvvvvGaGpaGssaAlrlakkGlrVlllekke 33 
                 yDv +vG+G  G+++A++lak+ ++V+l+e ++
  MMETSP1137-20121227|8781_1  93 YDVAIVGGGCIGAAIARELAKTDASVVLFEAAD 125
                 9*****************************986 PP

  == domain 2    score: -0.9 bits;  conditional E-value: 1.2
   TIGR02032  94 DelLaekAqeagaelllettvlsveied 121
                    Lae+A+++g+e+++ ++v+++   d
  MMETSP1137-20121227|8781_1 243 TIALAENAADNGVEMRIRREVQAISKSD 270
                 55799**************999866655 PP

  == domain 3    score: 4.0 bits;  conditional E-value: 0.039
   TIGR02032  20 akkGlrVlllekkelp.re.keCggalskraveelelpk 56 
                 ++kG++ ++++k++   r+ + C+g+ s+r  +    ++
  MMETSP1137-20121227|8781_1 331 SRKGMDGVVVDKESVRaRYvVNCAGGASDRLAKMIGDDS 369
                 589**********9752669*********9999887754 PP

>> TIGR01373  soxB: sarcosine oxidase, beta subunit family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.0   1.5e-05    0.0027      29     212 ..      91     269 ..      74     279 .. 0.74
   2 ?    1.2   0.0      0.15        28     217     372 ..     335     502 ..     317     515 .. 0.62

  Alignments for each domain:
  == domain 1    score: 14.4 bits;  conditional E-value: 1.5e-05
   TIGR01373  29 peydviivGgGGhGlatayylakehGitnvavle.kgwlGgGnvgrnttivrsnylyd...esaelyelalklweGlskdlnynvmlsqrGvlnlahstadlevlarrvnamrlnGvda.ellspeqvkkliplldvskdarfpvvGallqrraGtarhdavawGyaraadarGvdiiqncevtglikr 212
                  +ydv ivGgG  G a a  lak    + v ++e  + +  G +  n+ iv + y        a+l  +  +++  l+++l +       G l +a   ++ + l+        nGv +  ++ +e+++ + p ld         + al+   aGt      +   a  a   Gv++  + ev  + k 
  MMETSP1137-20121227|8781_1  91 GTYDVAIVGGGCIGAAIARELAKTD--ASVVLFEaADDVSQGATKGNSGIVHAGYDDTpgtMRAKLCWKGNQMFPDLDRELHFGYQ--LTGSLVVARGAEEEKHLHELLARGETNGVKNlRIVXKEELRLMEPNLDDA------CTAALFSPDAGTLTPYEYTIALAENAADNGVEMRIRREVQAISKS 269
                 58********************986..4566666156899**************975411135678888999*********99855..46888888888888888887778888999873566788888888888755......344556666666666666666666666666666666666665555 PP

  == domain 2    score: 1.2 bits;  conditional E-value: 0.15
   TIGR01373 217 viGvetsrGfigakkvgvavaGnsskvaelaG.....lrlplesyvlqalvs.eplkpiidtvvlsnavhvyvsqsdkGelviGagidgynsyaqrGnlp.....ileevleailelfpilsrvrllrswgGivdvspdaspiiaktpldnly.lncGwgtGGfkatp 372
                 + Gv   +  ++a+ v   + G s ++a++ G     ++  l  yvl    s +    i+         ++ v ++  G+l++G    +++ +a  G+ p     +l+++l++   l+p +      +s++G    s+++  ii  +  d  + l +G    G    p
  MMETSP1137-20121227|8781_1 335 MDGVVVDKESVRARYVVNCAGGASDRLAKMIGddsfeIKPRLGEYVLLKKTSgDQCNHILFPCPGPLGKGILVQKTLWGNLILGPTARDVHEWADPGTDPetreqVLQKILASCRRLVPGFNTDDAFQSFAGARAKSTEGDWIIRPSEADADFiLAAGIDSPGIAGSP 502
                 456677777777777777777777777777763332222234555554433313333333333333334455566667888888888888888887764322222677777777788899988888888888888888888888887776544156666666665555 PP

>> TIGR01790  carotene-cycl: lycopene cyclase family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.0   2.9e-06   0.00054       1      37 [.      94     130 ..      94     227 .. 0.77
   2 ?   -4.3   0.0       8.5   1.6e+03     123     140 ..     341     358 ..     309     362 .. 0.79

  Alignments for each domain:
  == domain 1    score: 17.0 bits;  conditional E-value: 2.9e-06
   TIGR01790   1 DliviGgGlAglaiAlelakpglrvqlieaapklpfn 37 
                 D++++GgG  g aiA elak + +v+l eaa+++   
  MMETSP1137-20121227|8781_1  94 DVAIVGGGCIGAAIARELAKTDASVVLFEAADDVSQG 130
                 9*****************************9986443 PP

  == domain 2    score: -4.3 bits;  conditional E-value: 8.5
   TIGR01790 123 ggqriqarlVidargfka 140
                 + + ++ar V+++ g ++
  MMETSP1137-20121227|8781_1 341 DKESVRARYVVNCAGGAS 358
                 567789999999999765 PP

>> TIGR01988  Ubi-OHases: ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.6   5.1e-06   0.00095       1      35 [.      94     127 ..      94     141 .. 0.86

  Alignments for each domain:
  == domain 1    score: 15.9 bits;  conditional E-value: 5.1e-06
   TIGR01988   1 divIvGgGlvGlalAlaLassadlkvalveakaae 35 
                 d++IvGgG +G+a+A +La ++d +v l+ea++  
  MMETSP1137-20121227|8781_1  94 DVAIVGGGCIGAAIARELA-KTDASVVLFEAADDV 127
                 9******************.566******998754 PP

>> TIGR02023  BchP-ChlP: geranylgeranyl reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.2   6.6e-06    0.0012       1      32 [.      93     124 ..      93     130 .. 0.94
   2 ?   -4.2   0.1       7.4   1.4e+03     138     162 ..     341     366 ..     338     368 .. 0.76

  Alignments for each domain:
  == domain 1    score: 15.7 bits;  conditional E-value: 6.6e-06
   TIGR02023   1 ydvlviGggpsGaaaaetLakagievillere 32 
                 ydv+++Ggg  Gaa a +Lak++ +v+l+e +
  MMETSP1137-20121227|8781_1  93 YDVAIVGGGCIGAAIARELAKTDASVVLFEAA 124
                 89**************************9976 PP

  == domain 2    score: -4.2 bits;  conditional E-value: 7.4
   TIGR02023 138 ekksveadvviG.aDGakskvakelg 162
                 +k+sv a++v+  a Ga  + ak +g
  MMETSP1137-20121227|8781_1 341 DKESVRARYVVNcAGGASDRLAKMIG 366
                 57889999988527778888888876 PP

>> TIGR01438  TGR: thioredoxin and glutathione reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.3   9.8e-06    0.0018       3      47 ..      93     137 ..      91     162 .. 0.93

  Alignments for each domain:
  == domain 1    score: 15.0 bits;  conditional E-value: 9.8e-06
   TIGR01438   3 ydliviGgGsGGlaaakeaaklgakvllldfvkptpqGtkwGiGG 47 
                 yd+ ++GgG  G a a+e ak +a v+l+++ +  +qG   G  G
  MMETSP1137-20121227|8781_1  93 YDVAIVGGGCIGAAIARELAKTDASVVLFEAADDVSQGATKGNSG 137
                 9*************************************9988766 PP

>> TIGR03467  HpnE: squalene-associated FAD-dependent desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   1.6   2.1e-05     0.004       1      32 [.      95     126 ..      95     131 .. 0.95

  Alignments for each domain:
  == domain 1    score: 14.3 bits;  conditional E-value: 2.1e-05
   TIGR03467   1 vvvvGgGlAGLaAAveLaraGvrvtllEarrq 32 
                 v++vGgG+ G a A eLa++ + v l+Ea+  
  MMETSP1137-20121227|8781_1  95 VAIVGGGCIGAAIARELAKTDASVVLFEAADD 126
                 89***************************975 PP

>> TIGR00275  TIGR00275: flavoprotein, HI0933 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.0   1.0    0.0012      0.23       1      33 [.      95     127 ..      95     132 .. 0.93
   2 ?    2.7   0.0     0.051       9.4     111     144 ..     245     279 ..     241     284 .. 0.89

  Alignments for each domain:
  == domain 1    score: 8.0 bits;  conditional E-value: 0.0012
   TIGR00275   1 viiiGgGaaGlmaAitaaeegakVlllEknkki 33 
                 v+i+GgG  G   A ++a+++a+V+l+E+++ +
  MMETSP1137-20121227|8781_1  95 VAIVGGGCIGAAIARELAKTDASVVLFEAADDV 127
                 79**************************99876 PP

  == domain 2    score: 2.7 bits;  conditional E-value: 0.051
   TIGR00275 111 aLlkelkelgvevlteskvksi.kkeeekfevete 144
                 aL+++++++gve++ + +v+ i k++++ f++e +
  MMETSP1137-20121227|8781_1 245 ALAENAADNGVEMRIRREVQAIsKSDDGLFNIEXN 279
                 689999****************8888999999875 PP

>> TIGR03219  salicylate_mono: salicylate 1-monooxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.3   0.1   5.6e-05      0.01       2      37 ..      94     128 ..      93     138 .. 0.87

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 5.6e-05
   TIGR03219   2 rvaiiGGGiaGvalalelsksshlnvklfeaapafg 37 
                  vai+GGG  G a+a el+k+    v lfeaa   +
  MMETSP1137-20121227|8781_1  94 DVAIVGGGCIGAAIARELAKT-DASVVLFEAADDVS 128
                 59****************997.57999*****8765 PP

>> TIGR03026  NDP-sugDHase: nucleotide sugar dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.3   0.1   6.1e-05     0.011       2      53 ..      94     145 ..      93     154 .. 0.92

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 6.1e-05
   TIGR03026   2 kiavvGlGYvGlplaallaekgheVvgvDidkekveklnkgkspikepglee 53 
                 ++a+vG G +G+++a  la+  ++Vv+++  +++ +   kg+s i  +g ++
  MMETSP1137-20121227|8781_1  94 DVAIVGGGCIGAAIARELAKTDASVVLFEAADDVSQGATKGNSGIVHAGYDD 145
                 599*******************************999999999999888776 PP

>> TIGR01316  gltA: glutamate synthase (NADPH), homotetrameric
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.3   0.1   6.1e-05     0.011     132     165 ..      92     124 ..      70     134 .. 0.86

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 6.1e-05
   TIGR01316 132 tkkkvaviGaGpaGlavaselakkGhevtvfeal 165
                 t   va++G G  G a+a elak+  +v +fea 
  MMETSP1137-20121227|8781_1  92 T-YDVAIVGGGCIGAAIARELAKTDASVVLFEAA 124
                 3.57****************************96 PP

>> TIGR00562  proto_IX_ox: protoporphyrinogen oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.1   0.1   6.2e-05     0.012       3      40 ..      93     128 ..      91     152 .. 0.85

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 6.2e-05
   TIGR00562   3 kkvvvvGgGisGLciayalekerpdvelvlvEakdRvG 40 
                  +v++vGgG  G +ia  l+k   d  +vl+Ea d v 
  MMETSP1137-20121227|8781_1  93 YDVAIVGGGCIGAAIARELAKT--DASVVLFEAADDVS 128
                 68********************..9********99874 PP

>> TIGR03329  Phn_aa_oxid: putative aminophosphonate oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.1   0.6   0.00058      0.11       6     199 ..      73     256 ..      71     275 .. 0.59
   2 ?   -3.7   0.0       4.3   8.1e+02     322     353 ..     443     474 ..     435     493 .. 0.85

  Alignments for each domain:
  == domain 1    score: 9.1 bits;  conditional E-value: 0.00058
   TIGR03329   6 qaleleqsdla.kalkgdteadvaivGGGftGlwtaillkqaepkldvlvlea.dlcGaGasGrnGGclltwsakfltlkrlfGeaeavrlvkeseqavleiaafckkhnidaelrldGtlytatseaqvGsldpvvaalerlginsweklseaelaaraGs..arhleGlyspvaasvqpgklvrGlrrvalelGve 199
                 qa+++e s +   a k d + dvaivGGG  G  +ai+   a+ +++v+++ea d    Ga+  n G + +            G  + ++l  + +q   ++++     +++  ++l G l  a  + ++  l+ ++a  e+ g+++ + + ++el+ +      +    l+sp a+++ p      l   a + Gve
  MMETSP1137-20121227|8781_1  73 QAVRAERSRTGhSAAKLDGTYDVAIVGGGCIG--AAIARELAKTDASVVLFEAaDDVSQGATKGNSGIVHAGYDD------TPGTMR-AKLCWKGNQMFPDLDR-----ELHFGYQLTGSLVVARGAEEEKHLHELLARGETNGVKNLRIVXKEELRLMEPNldDACTAALFSPDAGTLTPYEYTIALAENAADNGVE 256
                 677777666541455668899********999..67888888888999999954888999999999876543222......223332.2455555555555543.....34445555555555555555555555555556666666555555555554433113334555566666666655555555555555555 PP

  == domain 2    score: -3.7 bits;  conditional E-value: 4.3
   TIGR03329 322 lltkslrkffpalaevpiaaswnGasdrsvtG 353
                 ++  s r+++p ++  +   s++Ga  +s++G
  MMETSP1137-20121227|8781_1 443 KILASCRRLVPGFNTDDAFQSFAGARAKSTEG 474
                 55568899999999999999999999999988 PP

>> TIGR00292  TIGR00292: thiazole biosynthesis enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.4   0.00011      0.02      22      61 ..      93     134 ..      81     141 .. 0.82
   2 ?   -3.6   0.0       6.2   1.2e+03     147     167 ..     335     355 ..     329     361 .. 0.80

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 0.00011
   TIGR00292  22 sDviivGaGpsGLtaayylakeglkvvvlerk..laiGGGsw 61 
                  Dv+ivG+G  G + a+ lak    vv++e    ++ G   +
  MMETSP1137-20121227|8781_1  93 YDVAIVGGGCIGAAIARELAKTDASVVLFEAAddVSQGATKG 134
                 69****************************752255555544 PP

  == domain 2    score: -3.6 bits;  conditional E-value: 6.2
   TIGR00292 147 laGlkvDpLtlrsrvvvdatG 167
                 + G+ vD  ++r+r vv+++G
  MMETSP1137-20121227|8781_1 335 MDGVVVDKESVRARYVVNCAG 355
                 568888889999999998877 PP

>> TIGR01984  UbiH: 2-polyprenyl-6-methoxyphenol 4-hydroxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.2   0.00012     0.023       1      33 [.      94     125 ..      94     136 .. 0.87

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 0.00012
   TIGR01984   1 dviivGgglvGlslAlaLsrksklkialieaks 33 
                 dv+ivGgg +G+++A  L+++   ++ l+ea +
  MMETSP1137-20121227|8781_1  94 DVAIVGGGCIGAAIARELAKTD-ASVVLFEAAD 125
                 89****************9877.9******976 PP

>> TIGR02374  nitri_red_nirB: nitrite reductase [NAD(P)H], large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.4   0.00026     0.049     412     457 ..     564     609 ..     549     633 .. 0.79

  Alignments for each domain:
  == domain 1    score: 9.8 bits;  conditional E-value: 0.00026
   TIGR02374 412 alpdseqiCsCndvtkGalkaaiaeg..cstveelkactkagtsCGgC 457
                   p+++++C+C +vt  ++ +a +    + +++ +++ t+ag +  gC
  MMETSP1137-20121227|8781_1 564 VAPEQNIVCKCEKVTEAEIVEACRRSlpVDSTQGMRKRTRAGMG--GC 609
                 458999******************9988899*********9864..33 PP

>> TIGR01989  COQ6: ubiquinone biosynthesis monooxygenase COQ6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   0.3   0.00061      0.11       1      29 [.      93     117 ..      93     134 .. 0.79

  Alignments for each domain:
  == domain 1    score: 9.2 bits;  conditional E-value: 0.00061
   TIGR01989   1 lDvvivGgGlvGlalAaalkknpslkdkk 29 
                 +Dv+ivGgG +G+a+A  l+k+    d +
  MMETSP1137-20121227|8781_1  93 YDVAIVGGGCIGAAIARELAKT----DAS 117
                 8***************999875....444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (798 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       186  (0.0453437); expected 82.0 (0.02)
Passed bias filter:                      166  (0.0404681); expected 82.0 (0.02)
Passed Vit filter:                        61  (0.0148708); expected 4.1 (0.001)
Passed Fwd filter:                        22  (0.00536324); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              22  [number of targets reported over threshold]
# CPU time: 0.82u 0.19s 00:00:01.01 Elapsed: 00:00:00.75
# Mc/sec: 1404.36
//
Query:       MMETSP1137-20121227|8782_1  [L=530]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (530 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       137  (0.0333983); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.16s 00:00:00.52 Elapsed: 00:00:00.66
# Mc/sec: 1059.91
//
Query:       MMETSP1137-20121227|8783_1  [L=611]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.4e-18   63.7   0.0    2.8e-11   40.4   0.0    2.3  3  TIGR01132 pgm: phosphoglucomutase, alpha-D-glucose phosphate-specific
    3.2e-15   53.8   0.0    1.6e-13   48.1   0.0    2.8  2  TIGR03990 Arch_GlmM: phosphoglucosamine mutase
    2.3e-05   21.1   0.0      0.014   12.0   0.0    2.4  2  TIGR01455 glmM: phosphoglucosamine mutase


Domain annotation for each model (and alignments):
>> TIGR01132  pgm: phosphoglucomutase, alpha-D-glucose phosphate-specific
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.4   0.0     2e-14   2.8e-11      42     180 ..      34     178 ..      25     195 .. 0.86
   2 ?   -4.1   0.0      0.58     8e+02     159     178 ..     284     303 ..     276     308 .. 0.74
   3 !   20.7   0.0   1.8e-08   2.4e-05     303     473 ..     326     504 ..     322     515 .. 0.75

  Alignments for each domain:
  == domain 1    score: 40.4 bits;  conditional E-value: 2e-14
   TIGR01132  42 fGtsGhrGsalkgtfnea.hilaiaqavvevraaqGi...tGplyiGkdthalsepafvsvlevlaanqvevivqennrytptpavshailtynkgkkeal.adGivitpshnpp...edGGikynppnGGpaetevtkaiedrane 180
                  GtsG r    ++ f ea ++    q+v +   a+G+    G l i  d     + a + ++++ aa +v  +    ++   tpa+s  i t  +g ++     G +++ shnp    ed Gikyn  nGGpa  ++t+ +++ +++
  MMETSP1137-20121227|8783_1  34 PGTSGLRKK--TKVFMEApYLHNFVQSVFDALVAEGVpikGGTLVISGDGRFYNKEAIQIIIKMAAAAGVGRVWCGSEGLLSTPAMSAVIRTRARGLEGMSpFGGFILSASHNPGgidEDFGIKYNCENGGPAPEKLTNLMHKNTES 178
                 588998864..45666651666899***********85545899***************************************************98765516899********54448********************99887655 PP

  == domain 2    score: -4.1 bits;  conditional E-value: 0.58
   TIGR01132 159 nppnGGpaetevtkaiedra 178
                 + p+ G a++++t+a+e  a
  MMETSP1137-20121227|8783_1 284 ESPSHGHADPNLTHAVELVA 303
                 56788899999999998655 PP

  == domain 3    score: 20.7 bits;  conditional E-value: 1.8e-08
   TIGR01132 303 gndadadrhGivtpdkGllnpnhylavaieylykhrqqwaaevavGktlvssalidrvvadlgrklvevpvGfkwfvdGlldgslGfGGeesaGasflrkd.....GtvwstdkdGiilallaaeitavtGknpqqry...dela....akyGdpiyaridaaatsaqkarlkklspdevsat 473
                 + d dadr  i+   + +  p   lav +          a+     +++ +s+ +drv+ +lg   +evp G+k+f + + +++  f       + f+  +     G     +kdG+   l   +i+a   ++p++     ++++    ++yG  +yar d      +k++ +k+ + +v a+
  MMETSP1137-20121227|8783_1 326 AADGDADRNMIMGS-QFFCSPSDSLAVIVANAKCIPYYSAGLKGCARSMPTSCALDRVAEKLGIPCFEVPTGWKFFGNLMDSSTASFPD-TPKYTPFICGEesfgtGGDHVREKDGMWAVLAWLQILAAKNADPSKPLvsvKDVCldhwKEYGRNYYARYDYEG--VDKQAAEKMMASMVEAQ 504
                 68999***999887.9999********9998766666666778899****************************998766555556643.33444444332112115667889***99999999******999997541113333333389********99755..56667788999999887 PP

>> TIGR03990  Arch_GlmM: phosphoglucosamine mutase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.1   0.0   1.2e-16   1.6e-13       5     365 ..      35     467 ..      32     525 .. 0.76
   2 ?    0.2   0.0     0.043        59     393     426 ..     531     568 ..     520     584 .. 0.80

  Alignments for each domain:
  == domain 1    score: 48.1 bits;  conditional E-value: 1.2e-16
   TIGR03990   5 gtsGiRgvvgeeltpelalkvakalgtvl.......ekkkvvvgrDtRtsgellenaviagllstGvdVvdl...glvptPtlqyavkeegad.......aGimiTASHNP...peyNgiKllnsdG.......velsreeeeeieeilekeefelaewd.....evgkvk.....eeedalekyieailkkvdveaik....kkklkVvvDcgngags.lvtpellrelgvk.vitlnaepdGtFpgrnpEPt...eenLkelsklvketgad..............lgiahDgDaDRlvlvdekgefieedktlallakalle...kkkggkvvtnvssSravedvleeagvevirtkvGevnvaeklkeega...........vfGgEgnGgvifpelqlvrDgllaaalllellaeegkklsellaelpky 365
                 gtsG R+ ++  +++ ++ ++ +++   l       ++++ v++ D R   +   +++i+  +++Gv  v +   gl++tP++++++++           +G +++ASHNP    e+ giK   ++G       + l ++++e i+e    ++    + +     ++g+++     e  d +e+++  + + +d  aik    +k+++ v+D+ ng+ + ++   +++e+g+    ++n+ p+  F g+++      + nL++  +lv++ g +              +g a DgDaDR +++  +  +   d + +++a+a +    + + +  + ++ +S a+++v+e+ g+ +   + G  +  + + +  a           ++G E  G     ++   +Dg+ a++  l++la+++   s+ l ++ ++
  MMETSP1137-20121227|8783_1  35 GTSGLRKKTKVFMEAPYLHNFVQSVFDALvaegvpiKGGTLVISGDGRFYNKEAIQIIIKMAAAAGVGRVWCgseGLLSTPAMSAVIRTRARGlegmspfGGFILSASHNPggiDEDFGIKYNCENGgpapeklTNLMHKNTESIKEYSICSSLPDLDLSkpgsySLGSLDnpfkvEVFDPTEDHVMLLKQVFDFGAIKalfdRKDFSFVYDSMNGVQGpYARRVFVEEFGAPiESCMNSIPKEDFGGHESPSHghaDPNLTHAVELVAKMGLNkmglpietsapppsFGAAADGDADRNMIMGSQFFCSPSDSLAVIVANAKCIpyySAGLKGCARSMPTSCALDRVAEKLGIPCFEVPTGWKFFGNLMDSSTAsfpdtpkytpfICGEESFG--TGGDHVREKDGMWAVLAWLQILAAKNADPSKPLVSVKDV 467
                 899***999999999999999888877777888899******************************98776645589*******999876432223334479*********5555999****99888555544445666667777765544444444444000004555441111124567788887666666655554222279***********9661556667799****4467999*******9997543333779*************99********************************************9998641112345678999*********************************99986777777777445555556..46899999***************9998888766555554 PP

  == domain 2    score: 0.2 bits;  conditional E-value: 0.043
   TIGR03990 393 aevdtiDGvridledg.WvlvRpSgT...EpivRiyaE 426
                 ++v++  G+r+ ++dg  + +R SgT      +R+y E
  MMETSP1137-20121227|8783_1 531 KSVSKNQGIRFIFKDGsRIVFRLSGTgvqGATIRMYLE 568
                 5689999******99648999*****665578999987 PP

>> TIGR01455  glmM: phosphoglucosamine mutase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.0   0.0     1e-05     0.014      71     119 ..     108     166 ..      35     198 .. 0.71
   2 !    6.7   0.0   0.00039      0.54     233     307 ..     323     398 ..     314     411 .. 0.74

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 1e-05
   TIGR01455  71 klGvlptPavayltralrad.......aGvvisashnP...yeDnGiklFgaeGlkldd 119
                   G+l+tPa++ ++r+ +          G ++sashnP    eD Gik+  ++G   ++
  MMETSP1137-20121227|8783_1 108 SEGLLSTPAMSAVIRTRARGlegmspfGGFILSASHNPggiDEDFGIKYNCENGGPAPE 166
                 4589******99988753221122222699********55559*****99888854433 PP

  == domain 2    score: 6.7 bits;  conditional E-value: 0.00039
   TIGR01455 233 lGlafDGDaDRvlavDekGdivdGDkillllakalk...esgeLkentvvatvmsnlglekaleklglklartavGDr 307
                 +G a DGDaDR +++ ++      D++ +++a+a      s+ Lk+      + +  +l++  eklg++ +    G +
  MMETSP1137-20121227|8783_1 323 FGAAADGDADRNMIMGSQFFCSPSDSLAVIVANAKCipyYSAGLKG--CARSMPTSCALDRVAEKLGIPCFEVPTGWK 398
                 799***************999999**99999987641113444553..555566777777777777777776666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (611 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        68  (0.0165773); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.46u 0.17s 00:00:00.63 Elapsed: 00:00:00.55
# Mc/sec: 1466.28
//
Query:       MMETSP1137-20121227|8784_1  [L=77]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (77 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        51  (0.012433); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.12s 00:00:00.26 Elapsed: 00:00:00.27
# Mc/sec: 376.41
//
Query:       MMETSP1137-20121227|8785_1  [L=249]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.3e-29   97.5   0.0    1.1e-28   97.1   0.0    1.2  1  TIGR02180 GRX_euk: glutaredoxin
    1.7e-17   61.3   0.0      3e-17   60.5   0.0    1.4  1  TIGR02181 GRX_bact: glutaredoxin 3
    7.1e-17   59.1   0.0      1e-16   58.5   0.0    1.2  1  TIGR02189 GlrX-like_plant: glutaredoxin-like family
    1.9e-14   51.2   0.0    3.5e-14   50.4   0.0    1.4  1  TIGR02190 GlrX-dom: glutaredoxin-family domain
    3.4e-10   37.8   0.0    4.8e-10   37.3   0.0    1.2  1  TIGR00365 TIGR00365: monothiol glutaredoxin, Grx4 family
    8.2e-09   33.7   0.0    1.4e-08   33.0   0.0    1.3  1  TIGR02196 GlrX_YruB: glutaredoxin-like protein, YruB-family
    2.2e-07   29.0   0.0    3.7e-07   28.3   0.0    1.3  1  TIGR02200 GlrX_actino: glutaredoxin-like protein
    4.6e-06   24.6   0.0    7.6e-06   23.9   0.0    1.3  1  TIGR02194 GlrX_NrdH: glutaredoxin-like protein NrdH
     0.0003   18.6   0.0    0.00054   17.9   0.0    1.4  1  TIGR00411 redox_disulf_1: redox-active disulfide protein 1
    0.00036   18.5   0.0    0.00088   17.3   0.0    1.7  1  TIGR02183 GRXA: glutaredoxin, GrxA family


Domain annotation for each model (and alignments):
>> TIGR02180  GRX_euk: glutaredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.1   0.0   2.8e-31   1.1e-28       1      83 [.     115     195 ..     115     196 .. 0.97

  Alignments for each domain:
  == domain 1    score: 97.1 bits;  conditional E-value: 2.8e-31
   TIGR02180   1 VvvfsKsyCpYckkakelLkklkvkkalevveldklengselqdyLkeltgqrtVPrifingkfiGGsddlkklekkgkleel 83 
                 +vv+sKsyCp+c+ +k+l+++l v   + v+eld+++ gs+lq++L +++gqrtVP++fing+++GG+dd++k+ ++gkl e+
  MMETSP1137-20121227|8785_1 115 IVVYSKSYCPFCASTKKLFSQLDVP--FTVIELDEIDGGSDLQQALTSFSGQRTVPNVFINGEHLGGNDDTQKAFRSGKLLEM 195
                 79******************99999..*****************************************************987 PP

>> TIGR02181  GRX_bact: glutaredoxin 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.5   0.0   7.2e-20     3e-17       1      79 [.     115     195 ..     115     196 .. 0.88

  Alignments for each domain:
  == domain 1    score: 60.5 bits;  conditional E-value: 7.2e-20
   TIGR02181   1 vviYtkksCpycsrAkalLeekgvefeeievdkdk...eareemierskgrrtvPQifigdvhvGGcddLlaleregkLdkL 79 
                 +v+Y+k++Cp+c++ k+l ++ +v f+ ie+d+ +   ++++ +++ s g+rtvP +fi+ +h+GG+dd ++  r+gkL ++
  MMETSP1137-20121227|8785_1 115 IVVYSKSYCPFCASTKKLFSQLDVPFTVIELDEIDggsDLQQALTSFS-GQRTVPNVFINGEHLGGNDDTQKAFRSGKLLEM 195
                 79*************************999877654436667777777.8****************************9766 PP

>> TIGR02189  GlrX-like_plant: glutaredoxin-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.5   0.0   2.5e-19     1e-16       4      95 ..     109     200 ..     106     205 .. 0.94

  Alignments for each domain:
  == domain 1    score: 58.5 bits;  conditional E-value: 2.5e-19
   TIGR02189   4 lvsekavvifskssCClshvvkrLllelGvnPavveldkeaeakeiekallelgskeavPvvfvGGklvGgleevmalhlsgsLvpllkkag 95 
                  +  + +v++sks C ++ + k+L+++l v  +v+eld+ + ++++++al++++++ +vP vf+ G+ +Gg ++   +  sg+L +++k++ 
  MMETSP1137-20121227|8785_1 109 TINSNKIVVYSKSYCPFCASTKKLFSQLDVPFTVIELDEIDGGSDLQQALTSFSGQRTVPNVFINGEHLGGNDDTQKAFRSGKLLEMIKDSA 200
                 677899**********************************************************************************9753 PP

>> TIGR02190  GlrX-dom: glutaredoxin-family domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.4   0.0   8.5e-17   3.5e-14       7      77 ..     112     186 ..     107     188 .. 0.84

  Alignments for each domain:
  == domain 1    score: 50.4 bits;  conditional E-value: 8.5e-17
   TIGR02190   7 kesvsvftkpGCPfCakakavLkekGldfeeivLgkdirt....rslravtGattvPqvfinGkliGgsdeleay 77 
                  ++++v++k  CPfCa  k++  +  + f  i L++   +    ++l + +G+ tvP vfinG+++Gg d+ ++ 
  MMETSP1137-20121227|8785_1 112 SNKIVVYSKSYCPFCASTKKLFSQLDVPFTVIELDEIDGGsdlqQALTSFSGQRTVPNVFINGEHLGGNDDTQKA 186
                 679*********************999999999986443311226788999*******************98876 PP

>> TIGR00365  TIGR00365: monothiol glutaredoxin, Grx4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.3   0.0   1.2e-12   4.8e-10       2      98 ..     103     197 ..     102     198 .. 0.89

  Alignments for each domain:
  == domain 1    score: 37.3 bits;  conditional E-value: 1.2e-12
   TIGR00365   2 kekikeqvkenkvvlymkGtpelpqCGfsakavqilkalgvefatvnvle...deeireelkeysnWPtiPqlyvkgelvGGcdivlelyesgelkkllk 98 
                 +e+i e++++nk+v+y k       C f a++ +++++l+v f+ +++ e    +++++ l ++s   t+P ++++ge +GG d  ++ ++sg+l +++k
  MMETSP1137-20121227|8785_1 103 EEQIVETINSNKIVVYSKS-----YCPFCASTKKLFSQLDVPFTVIELDEidgGSDLQQALTSFSGQRTVPNVFINGEHLGGNDDTQKAFRSGKLLEMIK 197
                 58999***********985.....6999999999*******999997644222689***************************************99987 PP

>> TIGR02196  GlrX_YruB: glutaredoxin-like protein, YruB-family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.0   0.0   3.5e-11   1.4e-08       1      63 [.     114     179 ..     114     185 .. 0.86

  Alignments for each domain:
  == domain 1    score: 33.0 bits;  conditional E-value: 3.5e-11
   TIGR02196   1 kvkvYttpwCppCkkakeyLkskgiafeeid...vekdsaaaeellkklgqrsvPvivigekivvG 63 
                 k+ vY++  Cp C  +k+ + +  ++f  i+   ++ +s  ++ l++ +gqr vP + i+++ + G
  MMETSP1137-20121227|8785_1 114 KIVVYSKSYCPFCASTKKLFSQLDVPFTVIEldeIDGGSDLQQALTSFSGQRTVPNVFINGEHLGG 179
                 699************************98862236668888999****************776766 PP

>> TIGR02200  GlrX_actino: glutaredoxin-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.3   0.0   9.1e-10   3.7e-07       1      60 [.     114     175 ..     114     184 .. 0.87

  Alignments for each domain:
  == domain 1    score: 28.3 bits;  conditional E-value: 9.1e-10
   TIGR02200   1 kvtvYatswCgyCaslkrtLdkdgaeYevvdiekdeeaadyvksvn..dGnktvPtVkfadG 60 
                 k+ vY +s+C++Cas k+   +  ++++v+++++ ++++d  +++    G++tvP V +++ 
  MMETSP1137-20121227|8785_1 114 KIVVYSKSYCPFCASTKKLFSQLDVPFTVIELDEIDGGSDLQQALTsfSGQRTVPNVFINGE 175
                 578*************************************988776334*******977654 PP

>> TIGR02194  GlrX_NrdH: glutaredoxin-like protein NrdH
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.9   0.0   1.8e-08   7.6e-06       1      62 [.     115     179 ..     115     186 .. 0.80

  Alignments for each domain:
  == domain 1    score: 23.9 bits;  conditional E-value: 1.8e-08
   TIGR02194   1 itvysknnCvqCkatkkaleeqniafeeinideqp...eavdyvkel.GfravPVivaegeeslsG 62 
                 i+vysk  C  C  tkk +++ ++ f  i++de +   +  + + +  G r vP + ++ge +l G
  MMETSP1137-20121227|8785_1 115 IVVYSKSYCPFCASTKKLFSQLDVPFTVIELDEIDggsDLQQALTSFsGQRTVPNVFINGE-HLGG 179
                 78***************************98886511155555655348999999999887.6665 PP

>> TIGR00411  redox_disulf_1: redox-active disulfide protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.0   1.3e-06   0.00054       2      63 ..     114     176 ..     113     199 .. 0.85

  Alignments for each domain:
  == domain 1    score: 17.9 bits;  conditional E-value: 1.3e-06
   TIGR00411   2 kielftsPtCPyCPkakkvveevakeegdkvevekinvmedlkkale.y.GimavPaivingkv 63 
                 ki ++    CP+C   kk  ++    + + +e ++i+   dl++al  + G ++vP + ing+ 
  MMETSP1137-20121227|8785_1 114 KIVVYSKSYCPFCASTKKLFSQLDVPFTV-IELDEIDGGSDLQQALTsFsGQRTVPNVFINGEH 176
                 577889999*************9988865.8999************74359**********975 PP

>> TIGR02183  GRXA: glutaredoxin, GrxA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.0   2.1e-06   0.00088       2      80 ..     115     189 ..     114     195 .. 0.73

  Alignments for each domain:
  == domain 1    score: 17.3 bits;  conditional E-value: 2.1e-06
   TIGR02183   2 vvifGrpgcpycvrakqlaeklakeladfefryvdihaeGiskadlektvGkpvetvpqifvdekavGGctdfealvke 80 
                 +v++ +  cp+c  +k+l  +l       e   +d    G s  + + t      tvp++f++ +++GG  d ++  + 
  MMETSP1137-20121227|8785_1 115 IVVYSKSYCPFCASTKKLFSQLDVPFTVIELDEID----GGSDLQQALTSFSGQRTVPNVFINGEHLGGNDDTQKAFRS 189
                 689***************99996554444444333....4444333444445568***************999887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (249 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       153  (0.0372989); expected 82.0 (0.02)
Passed bias filter:                      129  (0.0314481); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                        10  (0.00243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.24u 0.18s 00:00:00.42 Elapsed: 00:00:00.33
# Mc/sec: 995.92
//
Query:       MMETSP1137-20121227|8786_1  [L=126]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (126 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       160  (0.0390054); expected 82.0 (0.02)
Passed bias filter:                      112  (0.0273038); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.12s 00:00:00.28 Elapsed: 00:00:00.28
# Mc/sec: 593.95
//
Query:       MMETSP1137-20121227|8787_1  [L=107]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (107 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       675  (0.164554); expected 82.0 (0.02)
Passed bias filter:                      114  (0.0277913); expected 82.0 (0.02)
Passed Vit filter:                        37  (0.00901999); expected 4.1 (0.001)
Passed Fwd filter:                        19  (0.00463189); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.16s 00:00:00.53 Elapsed: 00:00:00.37
# Mc/sec: 381.70
//
Query:       MMETSP1137-20121227|8789_1  [L=150]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (150 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        31  (0.00755729); expected 82.0 (0.02)
Passed bias filter:                       26  (0.00633837); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.17s 00:00:00.34 Elapsed: 00:00:00.32
# Mc/sec: 618.70
//
Query:       MMETSP1137-20121227|8790_1  [L=385]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (385 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        81  (0.0197465); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.13s 00:00:00.40 Elapsed: 00:00:00.45
# Mc/sec: 1129.24
//
Query:       MMETSP1137-20121227|8791_1  [L=337]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (337 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        71  (0.0173086); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.15s 00:00:00.40 Elapsed: 00:00:00.44
# Mc/sec: 1010.92
//
Query:       MMETSP1137-20121227|8792_1  [L=680]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (680 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       163  (0.0397367); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.16s 00:00:00.62 Elapsed: 00:00:00.56
# Mc/sec: 1602.72
//
Query:       MMETSP1137-20121227|8793_1  [L=423]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (423 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        76  (0.0185275); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.13s 00:00:00.41 Elapsed: 00:00:00.42
# Mc/sec: 1329.32
//
Query:       MMETSP1137-20121227|8794_1  [L=46]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (46 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        32  (0.00780107); expected 82.0 (0.02)
Passed bias filter:                       31  (0.00755729); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.15s 00:00:00.25 Elapsed: 00:00:00.26
# Mc/sec: 233.52
//
Query:       MMETSP1137-20121227|8794_2  [L=65]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.8e-16   58.3   0.7      2e-16   58.2   0.5    1.0  1  TIGR02349 DnaJ_bact: chaperone protein DnaJ
    3.1e-08   30.3   0.1    3.5e-08   30.1   0.0    1.0  1  TIGR03835 termin_org_DnaJ: terminal organelle assembly protein TopJ


Domain annotation for each model (and alignments):
>> TIGR02349  DnaJ_bact: chaperone protein DnaJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.2   0.5   9.8e-20     2e-16      37     103 ..       3      62 ..       1      64 [. 0.84

  Alignments for each domain:
  == domain 1    score: 58.2 bits;  conditional E-value: 9.8e-20
   TIGR02349  37 keaeekfkeineAyevLsdeekraqYDqfghagleggaggggagfegfeasefgdigdifeeffggg 103
                 + aee fk+++eAyevLs+ ekr++YDqfg+agl++g++g g++f++       + ++if++ffgg+
  MMETSP1137-20121227|8794_2   3 EMAEENFKKVSEAYEVLSNAEKRKTYDQFGRAGLQQGGMG-GGSFST------AQAEEIFSQFFGGQ 62 
                 679********************************98665.444544......45689999999975 PP

>> TIGR03835  termin_org_DnaJ: terminal organelle assembly protein TopJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.1   0.0   1.7e-11   3.5e-08      40      88 ..       5      59 ..       2      62 .. 0.73

  Alignments for each domain:
  == domain 1    score: 30.1 bits;  conditional E-value: 1.7e-11
   TIGR03835 40 aakifaeineandvLsnPkkraryDkyGhDGvDred..dldf...da.dvfdsff 88
                a++ f+ + ea++vLsn +kr+ yD++G  G+ + +  +  f   +a ++f  ff
  MMETSP1137-20121227|8794_2  5 AEENFKKVSEAYEVLSNAEKRKTYDQFGRAGLQQGGmgGGSFstaQAeEIFSQFF 59
                8899***************************987531122231112225666666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (65 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:00.27
# Mc/sec: 317.75
//
Query:       MMETSP1137-20121227|8795_1  [L=267]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   7.5e-129  428.3   0.9   8.8e-129  428.1   0.6    1.0  1  TIGR01347 sucB: dihydrolipoyllysine-residue succinyltransferase, E2 component of oxoglutarate dehydrogenase (succinyl-transferring) complex
    2.3e-60  202.8   5.6    2.7e-60  202.6   3.9    1.0  1  TIGR02927 SucB_Actino: 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase
    6.4e-48  161.5   6.6    1.3e-47  160.5   4.6    1.5  1  TIGR01348 PDHac_trf_long: dihydrolipoyllysine-residue acetyltransferase
    9.3e-47  157.9   0.3    1.1e-46  157.8   0.2    1.0  1  TIGR01349 PDHac_trf_mito: pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase


Domain annotation for each model (and alignments):
>> TIGR01347  sucB: dihydrolipoyllysine-residue succinyltransferase, E2 component of oxoglutarate dehydrogenase (succinyl-transferring) complex
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  428.1   0.6  8.5e-132  8.8e-129     164     404 .]      27     267 .]       2     267 .] 0.91

  Alignments for each domain:
  == domain 1    score: 428.1 bits;  conditional E-value: 8.5e-132
   TIGR01347 164 akaaenaatrseeRvkmtRlrqriaerLleaknstamLttFnevdmsavmelRkkykeefekkhgvklGFmsffvkavvealkefPevnaeidgddivykkylDisvavstdkGLvvPvvRdadalsladiekeikelakkaregklaledltgGtFtitnGGvfGsllstPiinppqsaiLGmhaikeRPvavngkieirPmmYlaLsYDhRliDGkeavtFLvkikelledperllldv 404
                 a+a++ +++ +e+Rv mtR+r+ria rL+ea+n++amLttFnevdmsa++++R+ yk++f kkh+vklGFms fv a+++al+e+P+vna idg divy++y+Disva++++ GLvvPv+Rd+++ls+adiekei+++++ka  g l++ed+ gGtF itnGGvfGsllstPiinppqsaiLGmh+i +RPvavng++ irPmmY+aL+YDhRliDG+eavt L++ikel+edp+r+l+dv
  MMETSP1137-20121227|8795_1  27 AAASSGVEEPRERRVAMTRMRKRIASRLKEAQNEAAMLTTFNEVDMSALTAMRNTYKDAFLKKHDVKLGFMSAFVAAAAKALQEQPAVNAVIDGGDIVYRDYVDISVAIASPTGLVVPVIRDVQKLSFADIEKEIVKYGTKASYGTLTVEDMAGGTFSITNGGVFGSLLSTPIINPPQSAILGMHGIFQRPVAVNGQVTIRPMMYIALTYDHRLIDGREAVTALKRIKELVEDPTRFLIDV 267
                 2222233778899*********************************************************************************************************************************************************************************************************************************986 PP

>> TIGR02927  SucB_Actino: 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  202.6   3.9   2.6e-63   2.7e-60     302     570 ..       2     259 ..       1     264 [. 0.93

  Alignments for each domain:
  == domain 1    score: 202.6 bits;  conditional E-value: 2.6e-63
   TIGR02927 302 aaaeaaeeakeaaaaeaaaaapaapaaakkapepekaklrGttqkvnrirqitakktveslqisaqltqvhevdvtrvaalrarakaefaekeGvnltflpffvkavvealkahpnvnasyneetkevtyhdaehlgiavdtprGllspviknagdlslpglakaiadlaarardnklkpdelsGgtftitniGseGalfdtpilvppqaailGtGaivkrprvikdedGnesiairsvvylpltydhrlvdGadagrflttikkrlee 570
                 aaa aae+a+eaaa+ a  a +   aaa++ +e      r +   ++r+r+ +a ++ e+ + +a lt+  evd++ ++a+r+  k++f++k+ v+l f+  fv a+ +al+  p vna +  ++ ++ y d +++++a+ +p Gl++pvi++ + ls++++ k i+    +a  + l  ++++Ggtf+itn G  G+l  tpi++ppq ailG+  i +rp+ ++       ++ir ++y++ltydhrl+dG +a   l  ik+ +e+
  MMETSP1137-20121227|8795_1   2 AAAAAAEAAAEAAAEGAVEAGAIGGAAASSGVE--EP--RERRVAMTRMRKRIASRLKEAQNEAAMLTTFNEVDMSALTAMRNTYKDAFLKKHDVKLGFMSAFVAAAAKALQEQPAVNAVI--DGGDIVYRDYVDISVAIASPTGLVVPVIRDVQKLSFADIEKEIVKYGTKASYGTLTVEDMAGGTFSITNGGVFGSLLSTPIINPPQSAILGMHGIFQRPVAVN-----GQVTIRPMMYIALTYDHRLIDGREAVTALKRIKELVED 259
                 788888888887777777777766666655554..44..667889****************************************************************************..***************************************************************************************************9998.....5699*****************************98886 PP

>> TIGR01348  PDHac_trf_long: dihydrolipoyllysine-residue acetyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  160.5   4.6   1.2e-50   1.3e-47     357     586 ..      38     264 ..       1     265 [. 0.90

  Alignments for each domain:
  == domain 1    score: 160.5 bits;  conditional E-value: 1.2e-50
   TIGR01348 357 veevelsrikkisganlarnWvmiPhvtqfdkaditelealrkqqneeaakekegvkltvlaillkavaaalkklPkfnasldedgerlilkkyvniGvavdtPnGllvPvikdvdrkgivelarelsdlakkardkkltademqGacftisslGgiGgtaftPivnaPevailGvsksalePvWdgkefePrlllPlslsydhrvidGadaarflkylselladirrll 586
                  ++v+++r++k  ++ l+ +     ++t f++ d+ +l a+r  ++ +a  +k++vkl  ++ ++ a+a+al++ P  na +d  g  +++++yv+i va+  P Gl+vPvi+dv++ +  ++ +e+ +   ka  + lt ++m G++f+i++ G  G+   tPi+n P+ ailG+     +Pv  + + + r ++ ++l+ydhr+idG +a   lk++ el++d+ r l
  MMETSP1137-20121227|8795_1  38 ERRVAMTRMRKRIASRLKEAQNEAAMLTTFNEVDMSALTAMRNTYK-DAFLKKHDVKLGFMSAFVAAAAKALQEQPAVNAVID--GGDIVYRDYVDISVAIASPTGLVVPVIRDVQKLSFADIEKEIVKYGTKASYGTLTVEDMAGGTFSITNGGVFGSLLSTPIINPPQSAILGMHGIFQRPVAVNGQVTIRPMMYIALTYDHRLIDGREAVTALKRIKELVEDPTRFL 264
                 36899***************************************99.9********************************986..779****************************************************************************************999999***999*************************************99876 PP

>> TIGR01349  PDHac_trf_mito: pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  157.8   0.2     1e-49   1.1e-46     189     437 .]      18     265 ..       2     265 .. 0.90

  Alignments for each domain:
  == domain 1    score: 157.8 bits;  conditional E-value: 1e-49
   TIGR01349 189 aaaaktpatkkaaapvetgeyedvplsniRkviakRLleskqtiPhyylsvevnvdkllklrkelnaaaee..rvklsvnDlivkAvalAlrevPevnsswtddvirkyknvDisvAvaipaGlitPivrnaeakgleeisnevkelakkArenkLkpeefqgGtftisnlGmlgikqFaaiinpPqaailavgasedkavvknkeekglevasilsvtlsvDHRviDGavgAeflkelkkllenPielll 437
                 a +a +   ++a + ve    + v++  +Rk ia+RL e+++         ev++++l ++r+  + a+ +   vkl      v A a+Al+e P vn+      i++ + vDisvA+a p+Gl+ P++r++++ + ++i +e++++++kA  + L+ e+  gGtf+i n G++g    + iinpPq+ail++    +++v  n +   +++  ++ + l+ DHR iDG  + + lk++k+l+e+P ++l+
  MMETSP1137-20121227|8795_1  18 AVEAGAIGGAAASSGVEEPRERRVAMTRMRKRIASRLKEAQNEAAMLTTFNEVDMSALTAMRNTYKDAFLKkhDVKLGFMSAFVAAAAKALQEQPAVNAVIDGGDIVYRDYVDISVAIASPTGLVVPVIRDVQKLSFADIEKEIVKYGTKASYGTLTVEDMAGGTFSITNGGVFGSLLSTPIINPPQSAILGMHGIFQRPVAVNGQ---VTIRPMMYIALTYDHRLIDGREAVTALKRIKELVEDPTRFLI 265
                 3333333334555566666678999**************************************998776443489***********************************************************************************************************************************...*************************************99886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (267 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       260  (0.0633837); expected 82.0 (0.02)
Passed bias filter:                      156  (0.0380302); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.33u 0.17s 00:00:00.50 Elapsed: 00:00:00.56
# Mc/sec: 629.31
//
Query:       MMETSP1137-20121227|8796_1  [L=96]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (96 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       117  (0.0285227); expected 82.0 (0.02)
Passed bias filter:                      104  (0.0253535); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.18s 00:00:00.32 Elapsed: 00:00:00.52
# Mc/sec: 243.67
//
Query:       MMETSP1137-20121227|8797_1  [L=354]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-73  244.6   0.4    1.8e-73  244.3   0.3    1.1  1  TIGR00493 clpP: ATP-dependent Clp protease, proteolytic subunit ClpP
    6.2e-06   23.8   0.2    0.00047   17.7   0.0    2.3  2  TIGR00706 SppA_dom: signal peptide peptidase SppA, 36K type
     0.0019   14.4   0.1     0.0037   13.5   0.0    1.4  2  TIGR00705 SppA_67K: signal peptide peptidase SppA, 67K type


Domain annotation for each model (and alignments):
>> TIGR00493  clpP: ATP-dependent Clp protease, proteolytic subunit ClpP
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  244.3   0.3   1.3e-76   1.8e-73      18     191 ..      72     245 ..      57     246 .. 0.98

  Alignments for each domain:
  == domain 1    score: 244.3 bits;  conditional E-value: 1.3e-76
   TIGR00493  18 fdiysrllkeriillsgevedevansivaqllfleaedpekdislyinspGGsitaGlaiydtmqfikpdvsticiGlaasmGafllaaGakGkrlalpnsrimihqplGGaqGqasdieiqakeilklkkklnellaektGqslekiekdterdfflsaeeakeyGlidkvlt 191
                  diy rl +erii+l++e++dev n+i+a +lf ++ed++k ++lyinspGGs+ aGla+ydt+q+i  +v t  +G+aasm +f+l aG++Gkr+alp+sr+mihqp+GG +Gqa d+ ++a++ilk+k +l ++ a+ tGq+ e+i  d +rd+++sa++a eyGlidk++t
  MMETSP1137-20121227|8797_1  72 VDIYNRLYQERIIFLGQEIDDEVCNQIIAVMLFSDSEDSNKPMYLYINSPGGSVIAGLALYDTIQHIXSQVITCNVGMAASMASFILGAGERGKRIALPHSRVMIHQPMGGSEGQAEDVRVEAEQILKIKGTLVTMYAQMTGQTRERIISDLDRDNYMSAQQALEYGLIDKIVT 245
                 69**************************************************************************************************************************************************************************86 PP

>> TIGR00706  SppA_dom: signal peptide peptidase SppA, 36K type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.0   3.4e-07   0.00047      28      83 ..     107     160 ..      87     170 .. 0.84
   2 !    3.8   0.0    0.0059       8.1     180     201 ..     230     251 ..     216     257 .. 0.86

  Alignments for each domain:
  == domain 1    score: 17.7 bits;  conditional E-value: 3.4e-07
   TIGR00706  28 ddksvkalvlkidSPGGtvvaseeiyeklkklkakkpvvasvgnvaaSGgyyiala 83 
                 +++s k + l i+SPGG+v a   +y++++++    +v++   ++aaS + +i  a
  MMETSP1137-20121227|8797_1 107 SEDSNKPMYLYINSPGGSVIAGLALYDTIQHIX--SQVITCNVGMAASMASFILGA 160
                 456778899***********************9..788998889999988777555 PP

  == domain 2    score: 3.8 bits;  conditional E-value: 0.0059
   TIGR00706 180 tgrqalklkLvDklgslddale 201
                 +++qal+ +L+Dk+ +  da +
  MMETSP1137-20121227|8797_1 230 SAQQALEYGLIDKIVTSVDAWD 251
                 79************99988876 PP

>> TIGR00705  SppA_67K: signal peptide peptidase SppA, 67K type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   0.0   2.7e-06    0.0037     332     404 ..      94     162 ..      76     171 .. 0.78
   2 ?   -3.8   0.0      0.46   6.3e+02     245     273 ..     222     250 ..     212     256 .. 0.70

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 2.7e-06
   TIGR00705 332 vggDtvaallrkarsDddvkAvvLRvnspGGsvfAseiirrelealkaaGkPvivsmGavAAsGgYWiasaad 404
                 v    +a +l    s+d+ k + L +nspGGsv A   +   ++++  +   vi    ++AAs + +i  a++
  MMETSP1137-20121227|8797_1  94 VCNQIIAVMLF-SDSEDSNKPMYLYINSPGGSVIAGLALYDTIQHIXSQ---VITCNVGMAASMASFILGAGE 162
                 33333333333.34567789********************999999999...999999*****9999988876 PP

  == domain 2    score: -3.8 bits;  conditional E-value: 0.46
   TIGR00705 245 elkklkgdsakkaleeklvtavvssaeve 273
                  l + +  sa++ale +l++++v+s +++
  MMETSP1137-20121227|8797_1 222 DLDRDNYMSAQQALEYGLIDKIVTSVDAW 250
                 55555666777888888888888877776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (354 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.28u 0.17s 00:00:00.45 Elapsed: 00:00:00.68
# Mc/sec: 687.12
//
Query:       MMETSP1137-20121227|8798_1  [L=72]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        43  (0.0104827); expected 82.0 (0.02)
Passed bias filter:                       41  (0.00999512); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.11s 00:00:00.25 Elapsed: 00:00:00.24
# Mc/sec: 395.97
//
Query:       MMETSP1137-20121227|8799_1  [L=109]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (109 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        78  (0.0190151); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.15s 00:00:00.30 Elapsed: 00:00:00.32
# Mc/sec: 449.59
//
Query:       MMETSP1137-20121227|8800_1  [L=252]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (252 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        90  (0.0219405); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.10s 00:00:00.32 Elapsed: 00:00:00.43
# Mc/sec: 773.52
//
Query:       MMETSP1137-20121227|8801_1  [L=88]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.05   11.2  27.8       0.37    8.4   3.7    3.6  3  TIGR03804 para_beta_helix: parallel beta-helix repeat
        7.1    4.5  44.8        1.2    7.0  12.9    2.2  2  TIGR02953 penta_MxKDx: pentapeptide MXKDX repeat protein


Domain annotation for each model (and alignments):
>> TIGR03804  para_beta_helix: parallel beta-helix repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   9.4   0.00029       0.6       8      43 ..       2      40 ..       1      51 [. 0.93
   2 ?    8.4   3.7   0.00018      0.37      10      22 ..      39      51 ..      37      61 .. 0.56
   3 ?    0.9   1.0      0.04        82      10      22 ..      74      86 ..      72      88 .] 0.64

  Alignments for each domain:
  == domain 1    score: 7.7 bits;  conditional E-value: 0.00029
   TIGR03804  8 snntlenNtasnNsy.GIyLydS..snNtlsnNtasnNg 43
                s+n+ ++N +s+N   G +++++  ++N  ++Nt+s+N+
  MMETSP1137-20121227|8801_1  2 SGNMMSGNMMSGNMMxGSVMNGNmmNGNMMNGNTMSGNT 40
                7899*****************999999999999999998 PP

  == domain 2    score: 8.4 bits;  conditional E-value: 0.00018
   TIGR03804 10 ntlenNtasnNsy 22
                nt ++Nt+s+N+ 
  MMETSP1137-20121227|8801_1 39 NTMSDNTMSGNTM 51
                4444444444444 PP

  == domain 3    score: 0.9 bits;  conditional E-value: 0.04
   TIGR03804 10 ntlenNtasnNsy 22
                n+ ++N +++N  
  MMETSP1137-20121227|8801_1 74 NMMNGNMMNGNMM 86
                5667777777755 PP

>> TIGR02953  penta_MxKDx: pentapeptide MXKDX repeat protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0  12.9   0.00061       1.2      36      78 .]       4      46 ..       1      46 [. 0.73
   2 ?    3.3  19.8    0.0082        17      27      78 .]      30      81 ..      30      88 .] 0.80

  Alignments for each domain:
  == domain 1    score: 7.0 bits;  conditional E-value: 0.00061
   TIGR02953 36 DaMkkdamakdaMskDamkkdamkkdamkkdgMkkDaMkkdam 78
                + M+ ++m+ + M    m  + m++++m+++ M+ + M+ + m
  MMETSP1137-20121227|8801_1  4 NMMSGNMMSGNMMXGSVMNGNMMNGNMMNGNTMSGNTMSDNTM 46
                4455577777888888888888888888888888888887776 PP

  == domain 2    score: 3.3 bits;  conditional E-value: 0.0082
   TIGR02953 27 aMkkdamkkDaMkkdamakdaMskDamkkdamkkdamkkdgMkkDaMkkdam 78
                +M+ ++m++++M+ ++m+ ++Ms   m  + m  ++m  + M  + M+++ m
  MMETSP1137-20121227|8801_1 30 MMNGNTMSGNTMSDNTMSGNTMSGNMMNGNMMPSNMMPSNMMPSNMMNGNMM 81
                5888888888888888888888888888888888888888887777777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (88 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        67  (0.0163335); expected 82.0 (0.02)
Passed bias filter:                       41  (0.00999512); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.14u 0.19s 00:00:00.33 Elapsed: 00:00:00.35
# Mc/sec: 331.86
//
Query:       MMETSP1137-20121227|8803_1  [L=206]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (206 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       142  (0.0346173); expected 82.0 (0.02)
Passed bias filter:                      117  (0.0285227); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.17s 00:00:00.37 Elapsed: 00:00:00.32
# Mc/sec: 849.68
//
Query:       MMETSP1137-20121227|8804_1  [L=138]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.2e-14   50.0   2.3      1e-13   49.3   1.6    1.4  1  TIGR03049 PS_I_psaK: photosystem I reaction center subunit PsaK
    0.00082   17.6   3.3    0.00082   17.6   2.3    2.3  2  TIGR03050 PS_I_psaK_plant: photosystem I reaction center PsaK


Domain annotation for each model (and alignments):
>> TIGR03049  PS_I_psaK: photosystem I reaction center subunit PsaK
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.3   1.6     5e-17     1e-13      11      81 .]      70     138 .]      61     138 .] 0.83

  Alignments for each domain:
  == domain 1    score: 49.3 bits;  conditional E-value: 5e-17
   TIGR03049  11 WspkvaiimilcnvlaivigrasikkrnegpklplskffkgfglpellattslGHilGvgvilGLanlgvl 81 
                  +p  + +m ++n+l++   + + k+   g+k    +++++fg+  llat+slGHi+Gvg+ilGL++ gvl
  MMETSP1137-20121227|8804_1  70 FTPAKTAVMAASNLLVMGTTKIQGKSLIGGTKH--DEMVDTFGMTWLLATASLGHIVGVGAILGLTATGVL 138
                 5788899*******9887775555555556665..678*******************************98 PP

>> TIGR03050  PS_I_psaK_plant: photosystem I reaction center PsaK
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.4   0.8    0.0051        11      10      66 ..      23      82 ..      19     102 .. 0.68
   2 !   17.6   2.3     4e-07   0.00082      54      83 .]     109     138 .]      98     138 .] 0.89

  Alignments for each domain:
  == domain 1    score: 4.4 bits;  conditional E-value: 0.0051
   TIGR03050 10 mvtsttlmlfagrfGlapsakrkataGl...klearesGlqtgdpaGftladvlalGavG 66
                m ++ ++m+++g    ap ++r ++  +     ++  s l +    Gft a +  + a  
  MMETSP1137-20121227|8804_1 23 MFAACSAMVLSGPRAAAPVVQRASSVKMvdpSAVDAASQLLAIADPGFTPAKTAVMAASN 82
                888999999999999999999987654421123344466666555599999987777654 PP

  == domain 2    score: 17.6 bits;  conditional E-value: 4e-07
   TIGR03050  54 ftladvlalGavGhilGvGivlGlkniGal 83 
                 f ++  la  + Ghi+GvG +lGl  +G+l
  MMETSP1137-20121227|8804_1 109 FGMTWLLATASLGHIVGVGAILGLTATGVL 138
                 6777889*********************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (138 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       132  (0.0321794); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.16u 0.13s 00:00:00.29 Elapsed: 00:00:00.42
# Mc/sec: 433.68
//
Query:       MMETSP1137-20121227|8805_1  [L=70]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        57  (0.0138957); expected 82.0 (0.02)
Passed bias filter:                       41  (0.00999512); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.13s 00:00:00.26 Elapsed: 00:00:00.30
# Mc/sec: 307.97
//
Query:       MMETSP1137-20121227|8806_1  [L=66]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (66 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        45  (0.0109703); expected 82.0 (0.02)
Passed bias filter:                       36  (0.00877621); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.15s 00:00:00.27 Elapsed: 00:00:00.30
# Mc/sec: 290.38
//
Query:       MMETSP1137-20121227|8807_1  [L=506]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.5e-91  304.6   9.0    2.3e-91  304.0   6.2    1.3  1  TIGR02997 Sig70-cyanoRpoD: RNA polymerase sigma factor, cyanobacterial RpoD-like family
    1.3e-80  268.3   4.4    2.9e-80  267.1   1.0    2.4  3  TIGR02393 RpoD_Cterm: RNA polymerase sigma factor RpoD
    1.1e-64  216.5   4.2    3.1e-62  208.5   1.8    3.0  3  TIGR02394 rpoS_proteo: RNA polymerase sigma factor RpoS
    6.1e-38  128.8   4.9    7.2e-38  128.6   2.5    1.7  2  TIGR02392 rpoH_proteo: alternative sigma factor RpoH
    1.5e-36  124.1   5.0    8.7e-32  108.5   1.3    2.2  2  TIGR02479 FliA_WhiG: RNA polymerase sigma factor, FliA/WhiG family
    3.3e-36  122.9   3.6    3.5e-33  113.0   0.9    2.1  2  TIGR02980 SigBFG: RNA polymerase sigma-70 factor, sigma-B/F/G subfamily
    4.9e-31  106.2   1.7    2.7e-29  100.5   0.4    2.1  2  TIGR02885 spore_sigF: RNA polymerase sigma-F factor
    2.7e-29   99.8  11.6      1e-28   97.9   4.5    4.2  2  TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family
    3.6e-27   93.2   1.0    2.7e-14   51.1   0.0    2.7  3  TIGR02846 spore_sigmaK: RNA polymerase sigma-K factor
    8.1e-24   82.3   0.4    1.6e-23   81.3   0.3    1.4  1  TIGR02850 spore_sigG: RNA polymerase sigma-G factor
    2.8e-21   74.0   1.4    5.3e-21   73.0   0.9    1.4  2  TIGR02941 Sigma_B: RNA polymerase sigma-B factor
    2.2e-19   67.6   2.4    8.3e-12   42.9   0.0    2.3  2  TIGR02835 spore_sigmaE: RNA polymerase sigma-E factor
      3e-06   24.6   1.3    3.6e-05   21.1   0.1    2.8  3  TIGR02859 spore_sigH: RNA polymerase sigma-H factor
  ------ inclusion threshold ------
      0.033   12.2   2.0        1.2    7.1   0.2    2.8  3  TIGR02985 Sig70_bacteroi1: RNA polymerase sigma-70 factor, Bacteroides expansion family 1


Domain annotation for each model (and alignments):
>> TIGR02997  Sig70-cyanoRpoD: RNA polymerase sigma factor, cyanobacterial RpoD-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  304.0   6.2   7.9e-94   2.3e-91       1     298 []     180     486 ..     180     486 .. 0.96

  Alignments for each domain:
  == domain 1    score: 304.0 bits;  conditional E-value: 7.9e-94
   TIGR02997   1 DlvrlylqeigrvplltaeeeielarqvqellaleekkeeleeqlekepskeelakavdlsekelkkalkqgrrAkeklikanLRLvvsvAkkYqkrglellDLiqeGslGleravekFdptkGykfstyAyWWirqgitraiaeqsrtiRlPiHiteklnklkkvqrelsqklgrepseaelaealeleveqvrellka..arkpvsLdakv......GkeedtelgdlledeeeePeeeveeellkedleellae.LkererevlrlrfGledeeeltlaeigeelnlsrervrqiekkalkklr 298
                 D++r+yl++ig+ +ll+++e   l+ +vq+ll  e k+e+le++ +++p++eela++++ls+k++++ l++ rrAk+ l++an+RLvvs+Ak ++  gl+l DLiqeG++Gl+ravek+d +kG+++styA+WWirq+i r+ia++srtiR+P+H+ + + ++kk++rel++ lgr p+eaelae+++++ve+vr++ ++   ++  s++a++      G+ + t l++ ++d ++  ++++e +l++ed+ ++l++ L+ere  vlr r+Gl d++++tl+eig+ l+++rervrqie+kal+klr
  MMETSP1137-20121227|8807_1 180 DSMRWYLKSIGKQRLLSPQEVNVLSAKVQQLLLWELKEEDLEDRFGRAPTTEELAADLQLSVKDYTEELRRLRRAKQLLVNANMRLVVSIAKXFMGAGLSLQDLIQEGAFGLNRAVEKYDLSKGFRMSTYATWWIRQAIMRSIADHSRTIRMPVHVHDLILQFKKQKRELANGLGRLPTEAELAEQMGISVEKVRQIDTNiaLTQVSSIEAPIfsksakGDGKATALENKIADATQDSTASLEATLMREDILKMLSSkLTERESFVLRHRYGLVDGQTKTLEEIGKGLSITRERVRQIETKALQKLR 486
                 899****************9999****************************************************************************************************************************************************************************9876511567889998876666679999****************************9999754************************************************8 PP

>> TIGR02393  RpoD_Cterm: RNA polymerase sigma factor RpoD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0       1.6   4.7e+02     142     177 ..     135     172 ..     127     216 .. 0.67
   2 ?    1.2   0.0      0.17        50      94     119 ..     218     243 ..     206     253 .. 0.81
   3 !  267.1   1.0   9.8e-83   2.9e-80       1     237 [.     254     498 ..     254     499 .. 0.92

  Alignments for each domain:
  == domain 1    score: -2.0 bits;  conditional E-value: 1.6
   TIGR02393 142 dselgdf..iedeevespedaaakellkeeleevletl 177
                  s+ +d    +d e  +p++++ ++  ++el++v++  
  MMETSP1137-20121227|8807_1 135 VSKTEDTktTSDAEPVQPTQHIDTADASQELDNVMHVQ 172
                 44444431146777788888999999999998888754 PP

  == domain 2    score: 1.2 bits;  conditional E-value: 0.17
   TIGR02393  94 rkllqelgrepteeelaeklgleaek 119
                   l  ++gr pt+eela  l+l+++ 
  MMETSP1137-20121227|8807_1 218 EDLEDRFGRAPTTEELAADLQLSVKD 243
                 5677899************9988764 PP

  == domain 3    score: 267.1 bits;  conditional E-value: 9.8e-83
   TIGR02393   1 akkklvesnlrlvvsiakkylnrGlsfldliqeGniGllkavekfdykkgykfstyatWWirqaitraiadqartiriPvhlvetinklakaerkllqelgrepteeelaeklgleaekvkeik.klakepv.slekpi......geeedselgdfiedeevespedaaakellkeeleevle.tlsereekvlklryGledgkektleevgkefnvtrerirqieskalrklrhpskskklkdfl 237
                 ak+ lv++n+rlvvsiak +++ Gls++dliqeG  Gl +avek+d +kg+++styatWWirqai r+iad +rtir+Pvh+ + i +++k++r+l + lgr pte elae++g+++ekv++i  ++a   v s+e+pi      g+ + + l++ i d + ++++ + + +l++e++ ++l+ +l+ere  vl++ryGl+dg++ktlee+gk +++trer+rqie+kal+klr ps s+kl+d+l
  MMETSP1137-20121227|8807_1 254 AKQLLVNANMRLVVSIAKXFMGAGLSLQDLIQEGAFGLNRAVEKYDLSKGFRMSTYATWWIRQAIMRSIADHSRTIRMPVHVHDLILQFKKQKRELANGLGRLPTEAELAEQMGISVEKVRQIDtNIALTQVsSIEAPIfsksakGDGKATALENKIADAT-QDSTASLEATLMREDILKMLSsKLTERESFVLRHRYGLVDGQTKTLEEIGKGLSITRERVRQIETKALQKLRSPSCSNKLRDYL 498
                 7999***********************************************************************************************************************63567666635888885544446677889999999965.5556678889999999999999*************************************************************8 PP

>> TIGR02394  rpoS_proteo: RNA polymerase sigma factor RpoS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   0.0      0.02       5.8      11      41 ..     178     208 ..     170     212 .. 0.89
   2 ?    1.6   0.0      0.12        34     140     168 ..     218     246 ..     213     252 .. 0.87
   3 !  208.5   1.8   1.1e-64   3.1e-62      46     272 ..     253     487 ..     247     496 .. 0.89

  Alignments for each domain:
  == domain 1    score: 4.1 bits;  conditional E-value: 0.02
   TIGR02394  11 aadaiqlylreiglkplltaeeelalarral 41 
                  +d+++ yl+ ig + ll+ +e   l+ +++
  MMETSP1137-20121227|8807_1 178 GSDSMRWYLKSIGKQRLLSPQEVNVLSAKVQ 208
                 68999*****************999988876 PP

  == domain 2    score: 1.6 bits;  conditional E-value: 0.12
   TIGR02394 140 rklekkldreasveevaelldkpvedvsk 168
                  +le++ +r +++ee+a+ l+ +v+d ++
  MMETSP1137-20121227|8807_1 218 EDLEDRFGRAPTTEELAADLQLSVKDYTE 246
                 579999******************99776 PP

  == domain 3    score: 208.5 bits;  conditional E-value: 1.1e-64
   TIGR02394  46 earkkmiesnlrlvvkiakkyvnrGlplldlieeGnlGllkavekfdPerGfrfstyatWWirqtieraimnqartirlPvhvvkelnvvlraarklekkldreasveevaelldkpvedvskllk.ln.ekiasldapldeds......ekslldlladekseePeelvqnedlkelieall.aelnekerevlarrfGlreyekatleevakelgltrervrqiqvealkklkr 272
                 +a++ ++++n+rlvv+iak +++ Gl+l dli+eG +Gl +avek+d  +Gfr+styatWWirq+i r+i + +rtir+Pvhv   + ++ + +r+l + l+r ++  e+ae+++ +ve+v+++ + ++  +++s++ap+ + s      +++l + +ad  +++ ++ ++ + ++e i ++l ++l+e+e  vl +r+Gl + +++tlee++k l +trervrqi  +al+kl++
  MMETSP1137-20121227|8807_1 253 RAKQLLVNANMRLVVSIAKXFMGAGLSLQDLIQEGAFGLNRAVEKYDLSKGFRMSTYATWWIRQAIMRSIADHSRTIRMPVHVHDLILQFKKQKRELANGLGRLPTEAELAEQMGISVEKVRQIDTnIAlTQVSSIEAPIFSKSakgdgkATALENKIADATQDS-TASLEATLMREDILKMLsSKLTERESFVLRHRYGLVDGQTKTLEEIGKGLSITRERVRQIETKALQKLRS 487
                 699***********************************************************************************************************************995413326899*****96544111112568899999877655.55667777887777777368************************************************96 PP

>> TIGR02392  rpoH_proteo: alternative sigma factor RpoH
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.0      0.38   1.1e+02     111     164 ..     200     252 ..     181     255 .. 0.71
   2 !  128.6   2.5   2.5e-40   7.2e-38      34     266 ..     252     487 ..     220     490 .. 0.82

  Alignments for each domain:
  == domain 1    score: 0.1 bits;  conditional E-value: 0.38
   TIGR02392 111 vkvattkaqrkLFFnlrkakkklkgalseeeveavaeeLgvseeevlemesRls 164
                 v v ++k q+ L ++l+++  + +   +    e++a +L+ s ++ +e  +Rl+
  MMETSP1137-20121227|8807_1 200 VNVLSAKVQQLLLWELKEEDLEDR-FGRAPTTEELAADLQLSVKDYTEELRRLR 252
                 677788889999999988776653.33555778899999999998888777775 PP

  == domain 2    score: 128.6 bits;  conditional E-value: 2.5e-40
   TIGR02392  34 leaakkLvlshLrlvvkiargYrgYGLpqadliqegniGLmkavkrfdPergvRlvsfavhWikaeiheyilrnWrlvkvattkaqrkLFFnlrkakkklkgalse.eeveavaeeLgvseeevlemesRlsgkDl.sleaeseededeseelieyLadkeseaeeeleee.eeeekqkeklkealekldersrriieaRw..ledekltLeelaaeygvsaeRvRqiekkalkklka 266
                 + a + Lv +++rlvv+ia+ + g GL+  dliqeg  GL +av ++d ++g+R++++a +Wi+ +i   i    r +++        L  +++k+k++l + l      +++ae++g+s e+v+++++ ++ + + s+ea++ ++++++  +++ L++k  +a++  + + e +  +++ lk   +kl er+  ++++R   ++ +++tLee+ + +++ +eRvRqie+kal+kl++
  MMETSP1137-20121227|8807_1 252 RRAKQLLVNANMRLVVSIAKXFMGAGLSLQDLIQEGAFGLNRAVEKYDLSKGFRMSTYATWWIRQAIMRSIADHSRTIRMPVHVH--DLILQFKKQKRELANGLGRlPTEAELAEQMGISVEKVRQIDTNIALTQVsSIEAPIFSKSAKGDGKATALENKIADATQDSTASlEATLMREDILKMLSSKLTERESFVLRHRYglVDGQTKTLEEIGKGLSITRERVRQIETKALQKLRS 487
                 2344557899**********************************************************************98765..56677777777777445431445689*****************9976552799999999999889999999996666555555505555555556666679************742446799***************************96 PP

>> TIGR02479  FliA_WhiG: RNA polymerase sigma factor, FliA/WhiG family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.1   3.3e-06   0.00098      88     132 ..     216     260 ..     204     268 .. 0.86
   2 !  108.5   1.3     3e-34   8.7e-32      20     221 ..     274     487 ..     258     488 .. 0.82

  Alignments for each domain:
  == domain 1    score: 16.7 bits;  conditional E-value: 3.3e-06
   TIGR02479  88 aieelearlgrepteeeiaeelgldlkevrkaleeinaeslvsld 132
                   e+le r+gr+pt ee+a+ l+l++k++ + l+ +  ++ + ++
  MMETSP1137-20121227|8807_1 216 KEEDLEDRFGRAPTTEELAADLQLSVKDYTEELRRLRRAKQLLVN 260
                 5689**************************999988877766655 PP

  == domain 2    score: 108.5 bits;  conditional E-value: 3e-34
   TIGR02479  20 lpssveleDliqaGmlgLldaierydeekgvkFetyavlRirGailDeLRkld...wvprslrkkakkleeaieelearlgrepteeeiaeelgldlkevrkaleeinaeslvsldellesedee.....lsladliedkksedpeeelereelkeklaeaiekLsereklvlsLyY....eeeLnlkEigevLelsesRvsQlhskalkkLra 221
                 + + ++l+Dliq G +gL  a+e+yd +kg++ +tya+ +ir ai+  +  +     +p ++++ + + +++ +el + lgr pte+e+ae++g+++++vr++ ++i+ +++ s+++ + s++ +     ++l+++i+d +++++++  ++ ++++ l+    kL+ere  vl   Y     +  +l Eig+ L ++  Rv Q+ +kal+kLr+
  MMETSP1137-20121227|8807_1 274 MGAGLSLQDLIQEGAFGLNRAVEKYDLSKGFRMSTYATWWIRQAIMRSIADHSrtiRMPVHVHDLILQFKKQKRELANGLGRLPTEAELAEQMGISVEKVRQIDTNIALTQVSSIEAPIFSKSAKgdgkaTALENKIADATQDSTASLEATLMREDILKMLSSKLTERESFVLRHRYglvdGQTKTLEEIGKGLSITRERVRQIETKALQKLRS 487
                 6677899*************************************97555444311135667777888999***********************************************99988777787776777777777775555544445555555555579**********999444347889**************************96 PP

>> TIGR02980  SigBFG: RNA polymerase sigma-70 factor, sigma-B/F/G subfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.5   0.0   0.00025     0.075      95     128 ..     216     249 ..     203     257 .. 0.85
   2 !  113.0   0.9   1.2e-35   3.5e-33       3     224 ..     253     487 ..     249     489 .. 0.88

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 0.00025
   TIGR02980  95 ateeLtqklgrePtveeiaeelevseeevveale 128
                 ++e+L +++gr+Pt+ee+a+ l++s ++ +e l 
  MMETSP1137-20121227|8807_1 216 KEEDLEDRFGRAPTTEELAADLQLSVKDYTEELR 249
                 5799*********************998887765 PP

  == domain 2    score: 113.0 bits;  conditional E-value: 1.2e-35
   TIGR02980   3 eareklvelnlkLvesiarrfrsrgeeleDlvQvgtiGLlkaidrfdlsrgvkFstyavPtivGEikrflRDktwavrvpRrlkelaakikkateeLtqklgrePtveeiaeelevseeevvealeaaksysassldasve....dddgdeialldtlgeedee....le.eveeklalkellakLdererrilllrff....edktQseiaeelGiSQmqvSRlekralkklre 224
                 +a++ lv++n++Lv sia+ f   g +l+Dl+Q g+ GL +a++++dls+g + stya   i   i r + D+++++r+p ++++l  + kk++ eL++ lgr Pt +e+ae++++s e+v ++ +     ++ss++a++     + dg+++al ++++++ ++    le ++ ++ +lk+l +kL ere  +l  r+     + kt +ei++ l i   +v  +e++al+klr+
  MMETSP1137-20121227|8807_1 253 RAKQLLVNANMRLVVSIAKXFMGAGLSLQDLIQEGAFGLNRAVEKYDLSKGFRMSTYATWWIRQAIMRSIADHSRTIRMPVHVHDLILQFKKQKRELANGLGRLPTEAELAEQMGISVEKVRQIDTNIALTQVSSIEAPIFsksaKGDGKATALENKIADATQDstasLEaTLMREDILKMLSSKLTERESFVLRHRYGlvdgQTKTLEEIGKGLSITRERVRQIETKALQKLRS 487
                 67889*********************************************************************************************************************999999988999999876422235788999999999985444111133144667788888899*************533336778889***********************96 PP

>> TIGR02885  spore_sigF: RNA polymerase sigma-F factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   0.0     0.015       4.4     102     128 ..     216     242 ..     200     257 .. 0.84
   2 !  100.5   0.4     9e-32   2.7e-29      11     228 ..     253     486 ..     249     488 .. 0.86

  Alignments for each domain:
  == domain 1    score: 4.9 bits;  conditional E-value: 0.015
   TIGR02885 102 ekeelakklerePtieelaealgleke 128
                 + e l  +++r+Pt eela+ l+l+  
  MMETSP1137-20121227|8807_1 216 KEEDLEDRFGRAPTTEELAADLQLSVK 242
                 568899**************9998865 PP

  == domain 2    score: 100.5 bits;  conditional E-value: 9e-32
   TIGR02885  11 eardklveenlrlvssivkrflnrGyeledlfqiGciGlvkaidkfdlsydvkfstyavPliiGeikrflrddg.iikvsrslkelakkirkekeelakklerePtieelaealglekeev.....vaalesaksl.qslydtvheddgdpillldkiadegeeesdllekialkeal.....kkldererqiillryf....kdktqtevakilGisqvqvsrlekkvlkklk 228
                 +a++ lv+ n+rlv+si+k f+  G  l+dl q G+ Gl +a++k+dls   ++stya   i   i r + d   +i++   + +l  + +k+k ela+ l+r Pt +elae++g++ e+v      +al  ++s+ + ++    + dg+   l +kiad +++++  le   ++e +     +kl+ere  ++  ry     + kt  e+ k l i++ +v ++e k+l+kl+
  MMETSP1137-20121227|8807_1 253 RAKQLLVNANMRLVVSIAKXFMGAGLSLQDLIQEGAFGLNRAVEKYDLSKGFRMSTYATWWIRQAIMRSIADHSrTIRMPVHVHDLILQFKKQKRELANGLGRLPTEAELAEQMGISVEKVrqidtNIALTQVSSIeAPIFSKSAKGDGKATALENKIADATQDSTASLEATLMREDIlkmlsSKLTERESFVLRHRYGlvdgQTKTLEEIGKGLSITRERVRQIETKALQKLR 486
                 68899******************************************************************97538*******************************************9844222234444444414588999999**************99988877776665544222237899***********533336678889**********************98 PP

>> TIGR02937  sigma70-ECF: RNA polymerase sigma factor, sigma-70 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.2      0.32        94      97     116 ..     151     170 ..     121     256 .. 0.53
   2 !   97.9   4.5   3.5e-31     1e-28       5     163 ..     257     487 ..     253     488 .. 0.94

  Alignments for each domain:
  == domain 1    score: 0.4 bits;  conditional E-value: 0.32
   TIGR02937  97 rpeeqeeaeelrerleqale 116
                 +p+++++  + +++l++++ 
  MMETSP1137-20121227|8807_1 151 QPTQHIDTADASQELDNVMH 170
                 55555555555555555443 PP

  == domain 2    score: 97.9 bits;  conditional E-value: 3.5e-31
   TIGR02937   5 qliesylplvykvarkylgdsldaeDlvqegflglikaldkfdpessfk..tyaysvirnsiidalrrkrelkvtneveiske..................................................................keeeeledeedrpeeqeeaeelrerleqale.kLperereilklry....leglslkeiAeelgisqetvsrilkraikkLkk 163
                  l++++++lv+++a+ + g +l ++Dl+qeg  gl +a++k+d +++f+  tya+++ir++i + + +++ ++++ +v++++                                                                    +e  + d+ ++ + ++ea+  re++ + l+ kL+ere  +l++ry     + ++l+ei++ l i++e+v++i+++a++kL++
  MMETSP1137-20121227|8807_1 257 LLVNANMRLVVSIAKXFMGAGLSLQDLIQEGAFGLNRAVEKYDLSKGFRmsTYATWWIRQAIMRSIADHS-RTIRMPVHVHDLilqfkkqkrelanglgrlpteaelaeqmgisvekvrqidtnialtqvssieapifsksakgdgkatALENKIADATQDSTASLEATLMREDILKMLSsKLTERESFVLRHRYglvdGQTKTLEEIGKGLSITRERVRQIETKALQKLRS 487
                 5899*****************9999******************************************999.999******999******************99999999999999999999999999999999999999999999998888888888888********************9**************77777799***************************96 PP

>> TIGR02846  spore_sigmaK: RNA polymerase sigma-K factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.1   0.0   9.1e-17   2.7e-14      47     134 ..     252     340 ..     238     351 .. 0.87
   2 ?   -1.3   0.0      0.92   2.7e+02     195     217 ..     357     379 ..     349     388 .. 0.80
   3 !   39.3   0.1   3.6e-13   1.1e-10     153     222 ..     416     485 ..     397     488 .. 0.85

  Alignments for each domain:
  == domain 1    score: 51.1 bits;  conditional E-value: 9.1e-17
   TIGR02846  47 eearnvliernlrlvahivkkfentgkdvddlisiGtiGlikaidsfdtekGtklatyaarcieneilmllralkkt.kgevslqdpiG 134
                 ++a++ l++ n+rlv  i k f  +g  ++dli  G+ Gl +a++ +d +kG +++tya+  i   i+ ++  + +t +  v+++d i 
  MMETSP1137-20121227|8807_1 252 RRAKQLLVNANMRLVVSIAKXFMGAGLSLQDLIQEGAFGLNRAVEKYDLSKGFRMSTYATWWIRQAIMRSIADHSRTiRMPVHVHDLIL 340
                 679*****************************************************************999887654388899998875 PP

  == domain 2    score: -1.3 bits;  conditional E-value: 0.92
   TIGR02846 195 ktqreiakklgisrsyvsriekk 217
                  t  e+a+++gis   v +i+ +
  MMETSP1137-20121227|8807_1 357 PTEAELAEQMGISVEKVRQIDTN 379
                 58899********9999999764 PP

  == domain 3    score: 39.3 bits;  conditional E-value: 3.6e-13
   TIGR02846 153 dsvleavekklevkklkkkl.kvlkerekevielryGlkdgeektqreiakklgisrsyvsriekkalkkl 222
                 ds    +e +l  +++ k l ++l+ere  v+++ryGl dg++kt  ei k l+i+r  v +ie kal+kl
  MMETSP1137-20121227|8807_1 416 DST-ASLEATLMREDILKMLsSKLTERESFVLRHRYGLVDGQTKTLEEIGKGLSITRERVRQIETKALQKL 485
                 443.345666667777777879************************************************9 PP

>> TIGR02850  spore_sigG: RNA polymerase sigma-G factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.3   0.3   5.5e-26   1.6e-23      34     251 ..     253     486 ..     229     488 .. 0.84

  Alignments for each domain:
  == domain 1    score: 81.3 bits;  conditional E-value: 5.5e-26
   TIGR02850  34 eareklingnlrlvlsviqrfnnrgeyvddlfqvgcigllksidnfdlsqnvkfstyavpmiigeirrylrdn.npirvsrslrdiaykalqvrdklvskkskeptvseiakelevpkeevvfald..aiqdpvslfepiy....ndggdpiyvmdqisdeknkdeswleeialkeal.....krlnereklilklrf..fegktq..mevaeeigisqaqvsrlekaalkqlk 251
                 +a++ l+n+n+rlv+s+ + f   g + +dl+q g  gl ++++++dls+  ++stya   i   i r + d   +ir+   + d+  +  + + +l +   + pt +e+a++++++ e+v       a+ +  s+  pi+    + +g +  + ++i+d  +  +  le   ++e +     ++l+ere ++l+ r+   +g+t+   e+ + + i++ +v ++e  al++l+
  MMETSP1137-20121227|8807_1 253 RAKQLLVNANMRLVVSIAKXFMGAGLSLQDLIQEGAFGLNRAVEKYDLSKGFRMSTYATWWIRQAIMRSIADHsRTIRMPVHVHDLILQFKKQKRELANGLGRLPTEAELAEQMGISVEKVRQIDTniALTQVSSIEAPIFsksaKGDGKATALENKIADATQDSTASLEATLMREDIlkmlsSKLTERESFVLRHRYglVDGQTKtlEEIGKGLSITRERVRQIETKALQKLR 486
                 68999*****************************************************************997258*************999999**********************999854433114455556666888322245688899999*****99999999998888865222335899**********84456654411588888889**************987 PP

>> TIGR02941  Sigma_B: RNA polymerase sigma-B factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0       1.2   3.4e+02     123     151 ..     218     246 ..     214     252 .. 0.81
   2 !   73.0   0.9   1.8e-23   5.3e-21      22     251 ..     244     487 ..     227     491 .. 0.85

  Alignments for each domain:
  == domain 1    score: -1.7 bits;  conditional E-value: 1.2
   TIGR02941 123 deltaelqrspkiaeiadrlgvseeevle 151
                 ++l +   r+p+  e+a  l++s ++  e
  MMETSP1137-20121227|8807_1 218 EDLEDRFGRAPTTEELAADLQLSVKDYTE 246
                 6788999999*******999999776555 PP

  == domain 2    score: 73.0 bits;  conditional E-value: 1.8e-23
   TIGR02941  22 lqkn..kneeaqeklvkkykdlvesiaykyskgsaihedlvqvGmvGllgairrydlsigkafeafaiptiiGeikrylrdktwsvhvprrikelGpkikkavdeltaelqrspkiaeiadrlgvseeevleimemgqsykalsvddki...eadsdGstvalldlvGes.edgydqtekrlvlekilpils....erekeiiecifienlsqket....GerlGisqmhvsrlkrraikklke 251
                 + ++  +   a++ lv+    lv sia+ +  ++   +dl+q G  Gl  a+++ydls g ++ ++a   i   i r + d + ++ +p  + +l  + kk   el++ l r p+ ae+a+++g+s e+v +i       +++s++  i    a+ dG + al + + ++ +d     e  l+ e+il++ls    ere  +++  +     q +t    G+ l i++  v +++ +a++kl+ 
  MMETSP1137-20121227|8807_1 244 YTEElrRLRRAKQLLVNANMRLVVSIAKXFMGAGLSLQDLIQEGAFGLNRAVEKYDLSKGFRMSTYATWWIRQAIMRSIADHSRTIRMPVHVHDLILQFKKQKRELANGLGRLPTEAELAEQMGISVEKVRQIDTNIALTQVSSIEAPIfskSAKGDGKATALENKIADAtQDSTASLEATLMREDILKMLSskltERESFVLRHRYGLVDGQTKTleeiGKGLSITRERVRQIETKALQKLRS 487
                 444433456788899********************************************************************************************************************999999999******99833345669999999988887516677889***********98744336788899888865555655511115566689999************96 PP

>> TIGR02835  spore_sigmaE: RNA polymerase sigma-E factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.9   0.0   2.8e-14   8.3e-12      52     126 ..     253     327 ..     238     349 .. 0.90
   2 !   23.4   0.8   2.5e-08   7.4e-06     157     227 ..     415     486 ..     387     491 .. 0.84

  Alignments for each domain:
  == domain 1    score: 42.9 bits;  conditional E-value: 2.8e-14
   TIGR02835  52 avksiliernlrlvvyiarkfentginiedlvsigtiglikavntfdpekkiklatyasrcieneilmylrrnnk 126
                  +k++l++ n+rlvv ia+ f  +g++++dl+  g+ gl +av+ +d +k  +++tya+  i + i+  +   ++
  MMETSP1137-20121227|8807_1 253 RAKQLLVNANMRLVVSIAKXFMGAGLSLQDLIQEGAFGLNRAVEKYDLSKGFRMSTYATWWIRQAIMRSIADHSR 327
                 5899**********************************************************9999877766555 PP

  == domain 2    score: 23.4 bits;  conditional E-value: 2.5e-08
   TIGR02835 157 divykeleeevdre.llkkalkklndrekkilelrfgladgeektqkevadllgisqsyisrlekrilkrlk 227
                 +  + +le+++ re +lk+  +kl++re  +l+ r+gl+dg+ kt  e+   l i++  + ++e + l++l+
  MMETSP1137-20121227|8807_1 415 QDSTASLEATLMREdILKMLSSKLTERESFVLRHRYGLVDGQTKTLEEIGKGLSITRERVRQIETKALQKLR 486
                 4456678888877626666678***********************************************998 PP

>> TIGR02859  spore_sigH: RNA polymerase sigma-H factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.1     0.052        15     134     192 ..     194     254 ..     186     260 .. 0.79
   2 !   21.1   0.1   1.2e-07   3.6e-05      19     101 ..     253     335 ..     238     427 .. 0.78
   3 ?    0.5   0.1      0.26        75      95     175 ..     378     467 ..     359     499 .. 0.55

  Alignments for each domain:
  == domain 1    score: 2.8 bits;  conditional E-value: 0.052
   TIGR02859 134 iiskeelakieskleel.lselelkvlvlyl.dgksyqeiaedlnrhvksidnalqrvkrk 192
                 ++s +e++ +  k+++l l el+ + l+  +    + +e+a dl+  vk   + l+r++r 
  MMETSP1137-20121227|8807_1 194 LLSPQEVNVLSAKVQQLlLWELKEEDLEDRFgRAPTTEELAADLQLSVKDYTEELRRLRRA 254
                 67888999999999986257898888876551567899*******************9986 PP

  == domain 2    score: 21.1 bits;  conditional E-value: 1.2e-07
   TIGR02859  19 kaleyliekyknfvkakarsyflvgadkediiqegmiglykairdykedklssfkafaelcvtrqiitaiktatrqkhiplns 101
                 +a+++l++   ++v + a+ ++  g   +d+iqeg  gl +a+  y+  k   + ++a   + + i+ +i   +r   +p+  
  MMETSP1137-20121227|8807_1 253 RAKQLLVNANMRLVVSIAKXFMGAGLSLQDLIQEGAFGLNRAVEKYDLSKGFRMSTYATWWIRQAIMRSIADHSRTIRMPVHV 335
                 78999**********************************************************99*****9999999998764 PP

  == domain 3    score: 0.5 bits;  conditional E-value: 0.26
   TIGR02859  95 khiplnsyvsldkpiydeesdrtlldvvseakvadpeeliiskeelakieskleells....elelkvlvl.y..ldg..ksyqeiaedl 175
                   i l    s++ pi+ + +      +  e+k+ad  +   +  e + +++++ ++ls    e e  vl   y  +dg  k+ +ei + l
  MMETSP1137-20121227|8807_1 378 TNIALTQVSSIEAPIFSKSAKGDGKATALENKIADATQDSTASLEATLMREDILKMLSskltERESFVLRHrYglVDGqtKTLEEIGKGL 467
                 457777777788888877766666666666666666554444444444444444444310003344455432222455223445555544 PP

>> TIGR02985  Sig70_bacteroi1: RNA polymerase sigma-70 factor, Bacteroides expansion family 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0       3.5     1e+03     132     145 ..     229     242 ..     179     253 .. 0.66
   2 ?    3.5   0.0     0.054        16     132     149 ..     358     375 ..     344     387 .. 0.84
   3 ?    7.1   0.2    0.0042       1.2      92     160 ..     414     487 ..     394     488 .. 0.68

  Alignments for each domain:
  == domain 1    score: -2.4 bits;  conditional E-value: 3.5
   TIGR02985 132 snkeIAeelgiSvk 145
                 +++e A  l++Svk
  MMETSP1137-20121227|8807_1 229 TTEELAADLQLSVK 242
                 34566666666655 PP

  == domain 2    score: 3.5 bits;  conditional E-value: 0.054
   TIGR02985 132 snkeIAeelgiSvkTVek 149
                 + +e Ae++giSv+ V++
  MMETSP1137-20121227|8807_1 358 TEAELAEQMGISVEKVRQ 375
                 5689**********9975 PP

  == domain 3    score: 7.1 bits;  conditional E-value: 0.0042
   TIGR02985  92 eeeeeeeleskeleeiieeaie.kLPeqcrkifk....lsrfeglsnkeIAeelgiSvkTVekhikkAlkkLrk 160
                  ++ +++le+  ++e i +++  kL+e+   +++    l   + ++ +eI + l+i+ + V++  +kAl+kLr 
  MMETSP1137-20121227|8807_1 414 TQDSTASLEATLMREDILKMLSsKLTERESFVLRhrygLVDGQTKTLEEIGKGLSITRERVRQIETKALQKLRS 487
                 34455566665555555555544677766555541111445689999*************************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (506 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       183  (0.0446124); expected 82.0 (0.02)
Passed bias filter:                      123  (0.0299854); expected 82.0 (0.02)
Passed Vit filter:                        26  (0.00633837); expected 4.1 (0.001)
Passed Fwd filter:                        14  (0.00341297); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.62u 0.18s 00:00:00.80 Elapsed: 00:00:00.84
# Mc/sec: 795.08
//
Query:       MMETSP1137-20121227|8808_1  [L=141]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (141 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        75  (0.0182838); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.17s 00:00:00.32 Elapsed: 00:00:00.27
# Mc/sec: 689.28
//
Query:       MMETSP1137-20121227|8809_1  [L=477]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   3.9e-126  418.9   0.6   4.6e-126  418.6   0.4    1.0  1  TIGR01930 AcCoA-C-Actrans: acetyl-CoA C-acetyltransferase
   6.1e-114  379.2   1.1   8.3e-114  378.8   0.8    1.0  1  TIGR02446 FadI: acetyl-CoA C-acyltransferase FadI
    1.9e-78  261.9   4.2    1.4e-54  183.4   0.9    3.0  2  TIGR02445 fadA: acetyl-CoA C-acyltransferase FadA
    2.7e-67  225.4   4.4    2.3e-66  222.3   3.0    2.0  1  TIGR02430 pcaF: 3-oxoadipyl-CoA thiolase
    6.7e-07   26.1   4.1    1.4e-06   25.1   0.4    3.0  3  TIGR03150 fabF: beta-ketoacyl-acyl-carrier-protein synthase II
    5.4e-05   19.9   0.2    0.00021   18.0   0.1    1.9  2  TIGR02845 spore_V_AD: stage V sporulation protein AD


Domain annotation for each model (and alignments):
>> TIGR01930  AcCoA-C-Actrans: acetyl-CoA C-acetyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  418.6   0.4  6.8e-129  4.6e-126       2     385 .]      64     474 ..      63     474 .. 0.98

  Alignments for each domain:
  == domain 1    score: 418.6 bits;  conditional E-value: 6.8e-129
   TIGR01930   2 vdavRtpigklggslkelsaedLlaavikelleragldpekidevilGnvlqageqaniaReaalaaglpesvpaltvnrvCaSglqAvalaaqkikaGeadvvvaGGvEsmSrvpillkaslrreslklgkakledqllkdl.................vktklsmgetAenlakkygisReeqDeyalrShqkaakAieegkfkdeivpvevkgkkkvvskDegirpnttlekLakLkpafkekkgstvtAgNssqlnDGAaalllmseevakelgltplarivsaavagvdp.eemglgpvpAiekaLkkaglsisdidlvEinEAFAaqvlavekelgs................ldlekvNvnGGAiAlGHPlGasGarivltllkeLkergkkyGlatlCvggGqGaAvile 385
                 vd+ R+p+   gg++++l+a dL+++++++ll ++ ++p +id+v +G+v+q+ +++niaR a + ag+p++vpa+tv+++C S+ qA+ +a  +i++G+a+vv+aGGvE+ S+vpi  ++ +r++ l lgkak++++++k +                  +t+  mg+++++l++++gi+ReeqD+yalrShq a+kA+ +g f++ei+pv+        +++ gir++ t+ek+a+Lk+af +++g tvtA+Nss l+DGAaa+llm++++a++lg+ p+a+++++ ++++dp e+++lgp++A++ +Lkkagl+++did++E++EAFA q+l + k+l+s                   ek+Nv+GG+++lGHP+Ga+Gar+v+t++++Lk++++++Gl+++C+ gG G+A i+e
  MMETSP1137-20121227|8809_1  64 VDGCRIPFQPSGGAYNDLMAYDLSRMALHGLLTKTAVKPTDIDYVLWGTVIQEVKTSNIARDASIGAGIPSNVPAHTVTQACISANQAICSAISQIQTGNAEVVIAGGVETFSDVPIRFSRPMRKAFLGLGKAKTMSKKMKLFsgvkakdlapeapaianFTTGEVMGHNTDRLCDRFGITREEQDAYALRSHQAANKAHIDGIFDEEITPVNGS------TEEGGIRKDATMEKMASLKAAFVKPHG-TVTAANSSFLTDGAAATLLMNKAKAEALGFAPKAYLREWVFVSCDPfEDLLLGPTYAVTSVLKKAGLTLKDIDVIEFHEAFAGQILSNLKALDSdaffaksmpgtqkvgaVPMEKFNVHGGSLSLGHPFGATGARLVTTVANRLKREDGRFGLIAACADGGIGHACIIE 474
                 99*******77******************************************************************************************************************************999999*****************99*************************************************8886......4799***********************.6*********************************************************************************************************9976459******************************************************97 PP

>> TIGR02446  FadI: acetyl-CoA C-acyltransferase FadI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  378.8   0.8  1.2e-116  8.3e-114       9     428 ..      61     474 ..      53     475 .. 0.98

  Alignments for each domain:
  == domain 1    score: 378.8 bits;  conditional E-value: 1.2e-116
   TIGR02446   9 iaivaglrtpfarqatafhgipavdlgkmvvsellarseidaklieqlvfgqvvqmpeapniareivlgtgmnvhtdaysvtracatsfqsavnvaesimagaieigiaggadsssvlpigvskklaralvdlnkartlgqklkvlsrlglkdllpvppavaeystglsmgqtaeqmaktygitraeqdalahrshtlaaqawadgklkeevmtafvepykkfiaednnirenssladyaklrpafdrkygsvtaanstpltdgaaavilmsegrakelgleilgyirsyaftaidveqdmllgpsyatplalkraglelsdltlidmheafaaqtlanvkllasekfaeeklgrakaigeidmskfnvlggsiayghpfaatgarlitqtlrelkrrggglglatacaagglgaamile 428
                 + +v g r pf     a++++ a dl +m +  ll+++ +++  i+ +++g v+q  ++ niar+  +g+g+  +  a++vt+ac ++ q++      i +g+ e+ iagg ++ s +pi  s+ + +a++ l ka+t+++k+k++s+++ kdl p  pa+a+++tg  mg+ +++++  +gitr+eqda a rsh+ a++a  dg + ee+      p +   +e+  ir+++++++ a l+ af + +g+vtaans+ ltdgaaa +lm++++a +lg+ +  y+r + f + d  +d+llgp+ya + +lk+agl+l+d+ +i++heafa q l+n+k l s+ f  +++  ++ +g + m+kfnv ggs++ ghpf atgarl+t + + lkr  g +gl +aca gg+g a i+e
  MMETSP1137-20121227|8809_1  61 VVLVDGCRIPFQPSGGAYNDLMAYDLSRMALHGLLTKTAVKPTDIDYVLWGTVIQEVKTSNIARDASIGAGIPSNVPAHTVTQACISANQAICSAISQIQTGNAEVVIAGGVETFSDVPIRFSRPMRKAFLGLGKAKTMSKKMKLFSGVKAKDLAPEAPAIANFTTGEVMGHNTDRLCDRFGITREEQDAYALRSHQAANKAHIDGIFDEEIT-----PVNGS-TEEGGIRKDATMEKMASLKAAFVKPHGTVTAANSSFLTDGAAATLLMNKAKAEALGFAPKAYLREWVFVSCDPFEDLLLGPTYAVTSVLKKAGLTLKDIDVIEFHEAFAGQILSNLKALDSDAFFAKSMPGTQKVGAVPMEKFNVHGGSLSLGHPFGATGARLVTTVANRLKREDGRFGLIAACADGGIGHACIIE 474
                 7899**********************************************************************************************************************************************************************************************************9999974.....55444.67889***********************************************************************************************************************999999999*************************************************************98 PP

>> TIGR02445  fadA: acetyl-CoA C-acyltransferase FadA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.5   0.1   5.9e-25     4e-22       1     126 [.      60     182 ..      60     212 .. 0.92
   2 !  183.4   0.9   2.1e-57   1.4e-54     142     384 ..     227     475 ..     201     476 .. 0.89

  Alignments for each domain:
  == domain 1    score: 76.5 bits;  conditional E-value: 5.9e-25
   TIGR02445   1 dvvivdalrtpmgrskggafrntraedlsahllkkllarnpkveaaevediywgcvqqtleqgfniarnaallaevphevaavtvnrlcgssmqalhdaaraimtgdaevcliggvehmghvsmsh 126
                 dvv+vd  r p+  s gga+ +  a dls   l++ll++ ++v++++++ ++wg v q ++   niar a++ a++p +v+a tv++ c s+ qa+ +a   i tg+aev++ ggve +  v++  
  MMETSP1137-20121227|8809_1  60 DVVLVDGCRIPFQPS-GGAYNDLMAYDLSRMALHGLLTK-TAVKPTDIDYVLWGTVIQEVK-TSNIARDASIGAGIPSNVPAHTVTQACISANQAICSAISQIQTGNAEVVIAGGVETFSDVPIRF 182
                 79*********9766.99*******************87.68****************997.57**********************************************************9875 PP

  == domain 2    score: 183.4 bits;  conditional E-value: 2.1e-57
   TIGR02445 142 agmmgltaemlgklhgisreqqdafaarsharahaatlegkfkneiiptegydadgvlkvldydevirpettvealaalrpafdpkngtvtagtssalsdgasamlvmseeraqelgvkprarirsmavagvdps.imgygpvpatkkalkraglsisdidvlelneafaaqalpvlkdlg....lldkl..........dekvnlnggaialghplgcsgaristtllnlmerkdakfglatmciglgqgiatvfer 384
                   +mg  ++ l+   gi+re qda+a+rsh+ a +a ++g f +ei p++g  ++g          ir ++t+e +a+l+ af    gtvta  ss l+dga+a l+m + +a+ lg  p+a +r    + +dp   +  gp  a    lk+agl+++didv+e+ eafa q+l  lk l+    + + +           ek n++gg+++lghp+g +gar+ tt+ n ++r+d++fgl + c   g g a ++er
  MMETSP1137-20121227|8809_1 227 GEVMGHNTDRLCDRFGITREEQDAYALRSHQAANKAHIDGIFDEEITPVNGSTEEGG---------IRKDATMEKMASLKAAFVKPHGTVTAANSSFLTDGAAATLLMNKAKAEALGFAPKAYLREWVFVSCDPFeDLLLGPTYAVTSVLKKAGLTLKDIDVIEFHEAFAGQILSNLKALDsdafFAKSMpgtqkvgavpMEKFNVHGGSLSLGHPFGATGARLVTTVANRLKREDGRFGLIAACADGGIGHACIIER 475
                 3489*************************************************9995.........899*****************************************************************625889************************************99885233222222221111222359*****************************************************999 PP

>> TIGR02430  pcaF: 3-oxoadipyl-CoA thiolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  222.3   3.0   3.4e-69   2.3e-66       3     399 ..      61     475 ..      59     476 .. 0.87

  Alignments for each domain:
  == domain 1    score: 222.3 bits;  conditional E-value: 3.4e-69
   TIGR02430   3 vyivdairtpiGrygGslssvraddlaavplkallarnpsldaaaiddvilGcanqaGednrnvarmaallaGlpvsvpgttvnrlcgsgldalglaaraikaGeadlviaGGvesmsrap...........fvlGkadsafsrsakledttiGwrfv..npklkalyGvdsmpetaenvaeefgvsredqdafalrsqqrtaaaqakGffaeeivpveikqkkGeetvvdkdehlraettlealaklkav.vredgtvtaGnasGvndGaaalllaseeavkrhgltprarilaaasaGvep.rvmGlgpvpavkkllaraglsledldvielneafaaqalavlrelg........laddd.......arvnpnGGaialGhplGasGarlvltalkqleksggryalatlciGvGqGialvier 399
                 v +vd+ r p+   gG+   + a dl+ + l+ ll++   ++ + id v++G+  q  +   n+ar a + aG+p++vp+ tv + c s+ +a++ a+  i++G+a++viaGGve++s  p             lGka++ +s++ kl+       +    p++++    + m++ ++ + ++fg++re+qda+alrs q +++a+  G+f+eei+pv+ +  +G           r ++t+e++a lka  v+++gtvta n+s + dGaaa ll  +  +++ g+ p+a +     +  +p   + lgp+ av  +l++agl+l+d+dvie+ eafa q l+ l++l         ++  +       ++ n  GG+++lGhp+Ga+Garlv+t+ ++l++++gr++l + c   G G a +ier
  MMETSP1137-20121227|8809_1  61 VVLVDGCRIPFQPSGGAYNDLMAYDLSRMALHGLLTKT-AVKPTDIDYVLWGTVIQEVK-TSNIARDASIGAGIPSNVPAHTVTQACISANQAICSAISQIQTGNAEVVIAGGVETFSDVPirfsrpmrkafLGLGKAKT-MSKKMKLFSGVKAKDLApeAPAIANFTTGEVMGHNTDRLCDRFGITREEQDAYALRSHQAANKAHIDGIFDEEITPVNGSTEEG---------GIRKDATMEKMASLKAAfVKPHGTVTAANSSFLTDGAAATLLMNKAKAEALGFAPKAYLREWVFVSCDPfEDLLLGPTYAVTSVLKKAGLTLKDIDVIEFHEAFAGQILSNLKALDsdaffaksMPGTQkvgavpmEKFNVHGGSLSLGHPFGATGARLVTTVANRLKREDGRFGLIAACADGGIGHACIIER 475
                 789********************************986.699*************9865.68*****************************************************9987773322111111123666654.67888888766555543336888999999************************************************9888888.........68999**********862699***********************************************9446889*************************************99962222211122211122222267899***************************************************9 PP

>> TIGR03150  fabF: beta-ketoacyl-acyl-carrier-protein synthase II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.1   0.4     2e-09   1.4e-06     145     190 ..     127     174 ..      90     181 .. 0.84
   2 ?   -0.2   0.0     0.099        68     281     314 ..     284     317 ..     272     341 .. 0.71
   3 ?   -0.5   0.0      0.12        84     278     302 ..     360     384 ..     356     447 .. 0.77

  Alignments for each domain:
  == domain 1    score: 25.1 bits;  conditional E-value: 2e-09
   TIGR03150 145 siklgl..kgpnlavvtACatgthaigeaarlikegeadvmiagGaea 190
                 si  g+  + p+++v+ AC ++++ai +a++ i++g+a+v+iagG e+
  MMETSP1137-20121227|8809_1 127 SIGAGIpsNVPAHTVTQACISANQAICSAISQIQTGNAEVVIAGGVET 174
                 44444421568999*******************************996 PP

  == domain 2    score: -0.2 bits;  conditional E-value: 0.099
   TIGR03150 281 mkaalkdaglkpeevdyinaHgtstplgdkaEtk 314
                 +++  ++ +++  +  ++  Hgt t ++ ++ t+
  MMETSP1137-20121227|8809_1 284 IRKDATMEKMASLKAAFVKPHGTVTAANSSFLTD 317
                 55555666777778899********999887654 PP

  == domain 3    score: -0.5 bits;  conditional E-value: 0.12
   TIGR03150 278 aramkaalkdaglkpeevdyinaHg 302
                 + a++  lk+agl+ +++d i  H 
  MMETSP1137-20121227|8809_1 360 TYAVTSVLKKAGLTLKDIDVIEFHE 384
                 5677888888888888888887774 PP

>> TIGR02845  spore_V_AD: stage V sporulation protein AD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.1     3e-07   0.00021      56     149 ..      89     189 ..      79     234 .. 0.75
   2 ?   -1.2   0.0      0.21   1.5e+02      57      75 ..     362     380 ..     359     405 .. 0.77

  Alignments for each domain:
  == domain 1    score: 18.0 bits;  conditional E-value: 3e-07
   TIGR02845  56 eavelalkkanlkkedvdfllaGdLlnqiisanfvarel........kiPflglygaCstsvetlalgaalvdggfadrvlaatsshyataerqfryPteyg 149
                  a++  l+k+ +k  d+d++l G ++  + ++n  ar++        ++P  ++  aC    +++  + + +++g a+ v+a+    ++ +  +f  P+  +
  MMETSP1137-20121227|8809_1  89 MALHGLLTKTAVKPTDIDYVLWGTVIQEVKTSNI-ARDAsigagipsNVPAHTVTQACISANQAICSAISQIQTGNAEVVIAGGVETFSDVPIRFSRPMRKA 189
                 56777899****************9977777665.55542222222268999**********************************9*99999999997643 PP

  == domain 2    score: -1.2 bits;  conditional E-value: 0.21
   TIGR02845  57 avelalkkanlkkedvdfl 75 
                 av+ +lkka+l+ +d+d +
  MMETSP1137-20121227|8809_1 362 AVTSVLKKAGLTLKDIDVI 380
                 89999*********99986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (477 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       136  (0.0331546); expected 82.0 (0.02)
Passed bias filter:                      102  (0.0248659); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.31u 0.34s 00:00:00.65 Elapsed: 00:00:00.45
# Mc/sec: 1399.08
//
Query:       MMETSP1137-20121227|8810_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        43  (0.0104827); expected 82.0 (0.02)
Passed bias filter:                       33  (0.00804486); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.07u 0.22s 00:00:00.29 Elapsed: 00:00:00.44
# Mc/sec: 155.99
//
Query:       MMETSP1137-20121227|8811_1  [L=245]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.7e-81  268.6   1.9    7.7e-81  268.4   1.3    1.0  1  TIGR00323 eIF-6: putative translation initiation factor eIF-6


Domain annotation for each model (and alignments):
>> TIGR00323  eIF-6: putative translation initiation factor eIF-6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  268.4   1.3   1.9e-84   7.7e-81       1     215 []       4     224 ..       4     224 .. 0.97

  Alignments for each domain:
  == domain 1    score: 268.4 bits;  conditional E-value: 1.9e-84
   TIGR00323   1 rvalsgnpeiGvyakvteevalvavnleekfesaleeeLe..vevlktkiaGsslvGalavgnkrGllv....sdqvldeeldelkkslevevieerltalGnvlllnddkavvspelekdvkekieDvlevevekgtiaglklvGsaavvtnrGgLvnPqvseeeleelksllkvelvaGtvnkGttvvGaglvanskgavvGedttgpELaiiEealgl 215
                 r +++++ e+Gv+ak+t++++l a++++++f+s +e+eL   ++v++t+iaG+++vG+++vgnk+Gl+v    +dq+l +++++l++ + ++++eerl+alGnv+++nd++a++++el+++++e ++Dvl+ve +++tiag+ lvGs++ ++n+G+Lv+P++s e+++el  ll+v++vaGtvn+G++v+Gag+v+n+  a  G dtt+ EL++iE++++l
  MMETSP1137-20121227|8811_1   4 RAQFENSCEVGVFAKMTNSYCLTALGGSHNFYSLFEAELAdhIPVVQTSIAGTRIVGRVTVGNKNGLIVpsttTDQELLHLRNSLPEGVLIQRVEERLSALGNVICCNDHVALIHTELDRETEEIVADVLGVEAFRQTIAGNALVGSYCCMSNQGALVHPKTSIEDQDELAALLQVPVVAGTVNRGSDVLGAGMVVNDWCAFCGLDTTATELQVIESIFKL 224
                 789************************************889***************************8887788888888888888**********************************************************************************************************************************975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (245 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       125  (0.0304729); expected 82.0 (0.02)
Passed bias filter:                      104  (0.0253535); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.12u 0.25s 00:00:00.37 Elapsed: 00:00:00.38
# Mc/sec: 850.98
//
Query:       MMETSP1137-20121227|8812_1  [L=403]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (403 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        90  (0.0219405); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.24s 00:00:00.43 Elapsed: 00:00:00.43
# Mc/sec: 1237.01
//
Query:       MMETSP1137-20121227|8813_1  [L=185]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (185 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        77  (0.0187713); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.17s 00:00:00.35 Elapsed: 00:00:00.70
# Mc/sec: 348.83
//
Query:       MMETSP1137-20121227|8814_1  [L=487]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   1.3e-109  364.7   9.7   1.6e-109  364.3   6.8    1.0  1  TIGR00967 3a0501s007: preprotein translocase, SecY subunit


Domain annotation for each model (and alignments):
>> TIGR00967  3a0501s007: preprotein translocase, SecY subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  364.3   6.8    4e-113  1.6e-109       1     412 [.      40     480 ..      40     482 .. 0.97

  Alignments for each domain:
  == domain 1    score: 364.3 bits;  conditional E-value: 4e-113
   TIGR00967   1 kekllfTlvlLvlfrlgtfipvpgidasasqesiqqnalfellnllsggalgeisifaLGIsPyitAsiilQLLtgdvapllelqkeegekgrrklqqltryltlilaliqslvivatgislv.navsdlglllvlliviqltvgsvivmwldElisk.kGiGnGisllifagIvatlpkallqatev.....................rqskvralee.llraelevllvllltvlvilvvvfvqearrkipiqsakvkggrrskqstylplklnqagviPvIlasallslialisqilnskeg..........................glayflntiksls..lskpvkailY....liliilFsffYve.vqlnPeelAknlkkqgmvipGiRpgketekylkrvlnrltviGslflgliavlpnlleallglpkllalggtsllivvgvaietvkqieselisr 412
                 kek+l+T ++L++f+++++ip++g ++++s+     ++ f+++++l+++++g  ++++LGIsP+it+++++QLL+g  ++++++++   +++r++++++++++ +++++ +++++v+ g   + + v +lg++ ++li++ql+v+++iv++ldEl++k +G+G+Gisl+i+++I++t++++ +++t+                      rq+k ral+e ++r++l++++++++tvl++lvv+++q +r+++p+++  ++g      ++ +p+kl++++++P+Il+ al+s+++++sq+l ++++                          g++y++++++s+   l +p+ ai+Y    l+ ++lFs++++e ++ +++++Ak+l++q+mv++G+R ++  +k+l+r++++++++G++++g+++v++++++a+++        gt++l++v++++++++ + +e ++ 
  MMETSP1137-20121227|8814_1  40 KEKILWTSITLFIFLVCCQIPIYGCKTNKSS-----DP-FYWMRVLLASNRG--TLMELGISPIITSGLVMQLLAG--SKIIDVDHG-LKEDRALFNGAQKLFGILITVGEAVAYVISG---MyGDVRELGAGNAILIILQLFVAGIIVIILDELLQKgYGLGSGISLFIATNICETIIWKTFSPTTIntgrgtefegalvalfhlvlsRQDKWRALKEaFYRQNLPNITNIMATVLIFLVVIYFQGFRVDLPVKYRTQRG-----MQGSYPIKLFYTSNMPIILQTALVSNLYFVSQLLYKRYPnnflvglfgkwkdeewagpsqqmptsGIVYYISPPNSMAevLLDPLRAIIYlafiLVACALFSKTWIEvSGSSAKDVAKQLRDQQMVMKGHRDSS-LAKELNRYIPTAAAFGGMCIGALTVVADFMGAIGS--------GTGILLAVTTIYQYFEMFVKENGQD 480
                 79**************************998.....99.*************..**********************..9****9977.99**************************888...558**************************************************************9********************************************************************99998.....9***********************************999**********************************999989999999999999988999**********99*************************.***********************************........*****************99998776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (487 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       173  (0.0421745); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.15s 00:00:00.52 Elapsed: 00:00:00.34
# Mc/sec: 1890.55
//
Query:       MMETSP1137-20121227|8815_1  [L=100]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (100 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        53  (0.0129205); expected 82.0 (0.02)
Passed bias filter:                       42  (0.0102389); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.13s 00:00:00.26 Elapsed: 00:00:00.72
# Mc/sec: 183.32
//
Query:       MMETSP1137-20121227|8817_1  [L=94]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (94 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        45  (0.0109703); expected 82.0 (0.02)
Passed bias filter:                       42  (0.0102389); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.12s 00:00:00.25 Elapsed: 00:00:00.28
# Mc/sec: 443.11
//
Query:       MMETSP1137-20121227|8819_1  [L=259]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      3e-70  233.5   0.3    3.6e-70  233.2   0.2    1.0  1  TIGR00038 efp: translation elongation factor P
    8.2e-35  118.5   0.2    9.8e-35  118.2   0.1    1.1  1  TIGR02178 yeiP: elongation factor P-like protein YeiP


Domain annotation for each model (and alignments):
>> TIGR00038  efp: translation elongation factor P
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  233.2   0.2   1.8e-73   3.6e-70       2     184 .]      22     204 ..      21     204 .. 0.98

  Alignments for each domain:
  == domain 1    score: 233.2 bits;  conditional E-value: 1.8e-73
   TIGR00038   2 sandlrkGlvieldgelyvvlefehvkpGkgqafvrvklknlktgkvlektfksgekvekaeveekemqylYkdgdsyvfmdketyeqievekealgdaakfLkenmevevvlyegepisvelpnkvelevtetepgvkgdtassst.KpatletGaevqVPlFieegekikvdtrtgeYveRa 184
                 ++nd++ Gl+ie+d+++++v ef hvkpGkg+afvr klknl+tg++lekt+k+ge + +a+v+++emqy+Y+dgd++vfm++et+e+  ++++++ +  +f+ke+m ++v  + g++i+v++p++v+l+v+etepg+kg+ta++ t KpatletGa+v+VP+Fie+ge ikvdt +++Y++R+
  MMETSP1137-20121227|8819_1  22 NTNDFKVGLTIEFDNSVWRVQEFLHVKPGKGSAFVRSKLKNLETGSTLEKTWKAGEAFPDAQVDKEEMQYSYDDGDDMVFMNMETFEEERIPRADIAK-NDFIKEEMXLTVLKWRGKAIDVQVPKSVQLKVAETEPGAKGNTAQGRTeKPATLETGAVVNVPIFIETGELIKVDTDDRKYLGRV 204
                 69**********************************************************************************************65.59*******************************************9999**********************************97 PP

>> TIGR02178  yeiP: elongation factor P-like protein YeiP
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  118.2   0.1   4.8e-38   9.8e-35       2     185 ..      23     203 ..      22     204 .. 0.94

  Alignments for each domain:
  == domain 1    score: 118.2 bits;  conditional E-value: 4.8e-38
   TIGR02178   2 aselkkGlvveyngktllikdievssPqgrGgaklyklrlsdvrtGakveerfkaddvldtvellrrevsfsyvdGeeyvfldeedytlytlkkdeiedellfiseglsgmsvllvdgeavalelPqsveleivetaPeikGasaskrt.kPaklstGlvvqvPeyiatGerilinteerkfmgr 185
                 ++++k Gl +e+++ ++ +++     P+  G +   + +l++++tG+ +e+ +ka +     ++ + e+++sy dG++ vf++ e +    + + +i ++  fi e++  ++vl + g+a+ +++P+sv+l++ et+P+ kG +a  rt kPa+l tG vv vP +i tGe i+++t++rk+ gr
  MMETSP1137-20121227|8819_1  23 TNDFKVGLTIEFDNSVWRVQEFLHVKPGK-G-SAFVRSKLKNLETGSTLEKTWKAGEAFPDAQVDKEEMQYSYDDGDDMVFMNMETFEEERIPRADIAKN-DFIKEEMX-LTVLKWRGKAIDVQVPKSVQLKVAETEPGAKGNTAQGRTeKPATLETGAVVNVPIFIETGELIKVDTDDRKYLGR 203
                 5789*****************99999964.4.4456778899*******************************************************987.7*****96.89*********************************999659********************************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (259 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       131  (0.0319356); expected 82.0 (0.02)
Passed bias filter:                      112  (0.0273038); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.22u 0.15s 00:00:00.37 Elapsed: 00:00:00.60
# Mc/sec: 569.75
//
Query:       MMETSP1137-20121227|8820_1  [L=156]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (156 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       210  (0.0511945); expected 82.0 (0.02)
Passed bias filter:                      133  (0.0324232); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.15s 00:00:00.32 Elapsed: 00:00:00.47
# Mc/sec: 438.09
//
Query:       MMETSP1137-20121227|8821_1  [L=31]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (31 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        17  (0.00414432); expected 82.0 (0.02)
Passed bias filter:                       17  (0.00414432); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.24
# Mc/sec: 170.49
//
Query:       MMETSP1137-20121227|8822_1  [L=430]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (430 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       106  (0.0258411); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.15s 00:00:00.43 Elapsed: 00:00:00.52
# Mc/sec: 1091.45
//
Query:       MMETSP1137-20121227|8823_1  [L=641]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (641 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        98  (0.0238908); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.15s 00:00:00.55 Elapsed: 00:00:00.47
# Mc/sec: 1800.11
//
Query:       MMETSP1137-20121227|8824_1  [L=253]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.2e-13   48.9   0.0    4.7e-13   47.0   0.0    1.7  1  TIGR00186 rRNA_methyl_3: RNA methyltransferase, TrmH family, group 3
    5.6e-07   27.5   0.0    7.8e-07   27.0   0.0    1.3  1  TIGR00050 rRNA_methyl_1: RNA methyltransferase, TrmH family, group 1


Domain annotation for each model (and alignments):
>> TIGR00186  rRNA_methyl_3: RNA methyltransferase, TrmH family, group 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.0   0.0   2.3e-16   4.7e-13      85     233 ..      14     185 ..       6     189 .. 0.79

  Alignments for each domain:
  == domain 1    score: 47.0 bits;  conditional E-value: 2.3e-16
   TIGR00186  85 ktakskk.apllliLdeitDphNlGailRtAealgvdgv...vlkkrrsapltstvv.ktssGalellplvrvtnlsetltklkesgfwivgtsleaeetkyekkktk..................klaLvvGnEgkGvrklikkksDflikipmagkvdSLNvSVAtgill 233
                  +a+ +  + l ++Ld+i+D  N  ai+R+Aea+g   v    +k   +++  + +      G  + l++ +     e   +l+  gf++ ++ +    + + +  ++                  ++a+v GnE  Gv++ + + sD   +ip++g  +SL v  A+++++
  MMETSP1137-20121227|8824_1  14 RKAAYARmQGLRVVLDGIEDCGNRAAIMRSAEAFGLLHVhelAFKGGDASSRHAKARaLLINGGEKWLNIHTHSSSEECCLELQRLGFLVCAGVAPPGRASQSNLPQDtksykaqimtlaqidfgkQVAVVFGNERFGVSEEMLRLSDIHFTIPLRGLSESLSVGAAAAVVI 185
                 444445558999**********************96655211554444333332222023469999************************999887666533332222346788999****************************************************998 PP

>> TIGR00050  rRNA_methyl_1: RNA methyltransferase, TrmH family, group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.0   0.0   3.8e-10   7.8e-07       6     156 ..      25     191 ..      21     234 .. 0.66

  Alignments for each domain:
  == domain 1    score: 27.0 bits;  conditional E-value: 3.8e-10
   TIGR00050   6 sivlvepktsgNvGsiARamknmGl...eeLilvnpkv..leeeayalaagakdilenakvvddldea...lddldlvvgTs.ar.sralkkvl.ltPreladkllakkg.....kvalvFGREdsGLtNEElekcdvlvsiptseeYpslNlsqAvavilYelrea 156
                 ++vl   +  gN  +i R +  +Gl   +eL      +  ++ +a+al ++  +   n++   + +e    l++l ++v    a+  ra ++ l  + +    +++  +      +va+vFG E+ G + E l+++d++ +ip      sl ++ A+av++ + r  
  MMETSP1137-20121227|8824_1  25 RVVLDGIEDCGNRAAIMRSAEAFGLlhvHELAFKGGDAssRHAKARALLINGGEKWLNIHTHSSSEECcleLQRLGFLVCAGvAPpGRASQSNLpQDTKSYKAQIMTLAQidfgkQVAVVFGNERFGVSEEMLRLSDIHFTIPLRGLSESLSVGAAAAVVIHFGRVS 191
                 66666666667777777777777763333455544333235555566666666666677777666664322556777777765556444443330233333333332222344579*******************************************98775544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (253 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       101  (0.0246221); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.24u 0.14s 00:00:00.38 Elapsed: 00:00:00.59
# Mc/sec: 565.99
//
Query:       MMETSP1137-20121227|8825_1  [L=165]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (165 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        68  (0.0165773); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.16s 00:00:00.34 Elapsed: 00:00:00.34
# Mc/sec: 640.54
//
Query:       MMETSP1137-20121227|8826_1  [L=905]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
          3    4.5  11.9        6.7    3.4   8.2    1.5  1  TIGR01843 type_I_hlyD: type I secretion membrane fusion protein, HlyD family


Domain annotation for each model (and alignments):
>> TIGR01843  type_I_hlyD: type I secretion membrane fusion protein, HlyD family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   8.2    0.0016       6.7     151     222 ..     311     381 ..     289     392 .. 0.86

  Alignments for each domain:
  == domain 1    score: 3.4 bits;  conditional E-value: 0.0016
   TIGR01843 151 qikqleaeleglqaqlqalrqqleliseelealrkLkekglvsrlelLelereraelqgelaeleaeleklk 222
                 ++++++a ++++qa l++ r+++++i+ +++alr+Lk+k  ++++++ el r +a+ +++l +  ae+ +l 
  MMETSP1137-20121227|8826_1 311 RRANRKAARSQIQASLKKDRDEAQVIKAKAKALRNLKDKAQMAQAQT-ELARLQAQRKEDLLRRAAERRELG 381
                 5678889999*****************************99998775.999999999999999999988775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (905 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       216  (0.0526572); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.61u 0.14s 00:00:00.75 Elapsed: 00:00:00.85
# Mc/sec: 1405.30
//
Query:       MMETSP1137-20121227|8827_1  [L=159]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (159 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       104  (0.0253535); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.11s 00:00:00.27 Elapsed: 00:00:00.27
# Mc/sec: 777.27
//
Query:       MMETSP1137-20121227|8828_1  [L=56]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       238  (0.0580205); expected 82.0 (0.02)
Passed bias filter:                      171  (0.041687); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.20s 00:00:00.31 Elapsed: 00:00:00.36
# Mc/sec: 205.32
//
Query:       MMETSP1137-20121227|8829_1  [L=221]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (221 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       122  (0.0297416); expected 82.0 (0.02)
Passed bias filter:                      109  (0.0265724); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.17s 00:00:00.38 Elapsed: 00:00:00.48
# Mc/sec: 607.70
//
Query:       MMETSP1137-20121227|8830_1  [L=341]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-20   71.4   0.0      2e-20   70.9   0.0    1.2  1  TIGR01293 Kv_beta: voltage-dependent potassium channel beta subunit


Domain annotation for each model (and alignments):
>> TIGR01293  Kv_beta: voltage-dependent potassium channel beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.9   0.0   4.9e-24     2e-20      12     283 ..      12     278 ..       7     314 .. 0.75

  Alignments for each domain:
  == domain 1    score: 70.9 bits;  conditional E-value: 4.9e-24
   TIGR01293  12 rvsclglgtw...vvfgsqisdeqaedllklayesginlfdiaevyaagk.........aetelgkilkkkgwrrssyvittkifwggkaeeerglsrkhiieglkaslerlqleyvdivlanrad.psspmeevvramtyvinqglalywgtsrwsaveimeaysvarqfnlippiv.eqaeyhlfqrekvelqlpelyhkigvgavtwsplalalvdskyddklpkaskatlkgyqwlkekvrseegrrqqarlkdlaalaeklgctlaqlaiawslrs.egvss 283
                 + s++g+g     + +g+ + de a +l++  ye g n+fd+aevy   k          e ++gk l k  + r syv++tk f g    ++       +  ++ +sl rl ++y+d+ +++r       +ee +r++  v++ g   y g s  s           r+   i p++  q e+ l++r+  +  +p     + +g v++spla  l      d+ pk  +a+         +  +e+ +++++  k++  +ae    + aql++ w  ++ e+++ 
  MMETSP1137-20121227|8830_1  12 KSSAIGFGCMgitAFYGPAMVDEDAIKLIQEVYEAGCNMFDTAEVYQQFKevvegsskyNEEVVGKALAK--FPRESYVLATKFFPG---LHDGKCDYETVSAAVDGSLSRLGMKYIDLYYLHRMPsTVEDLEEWMRSIKAVVESGRVKYVGLSEVSPNW-------LRRAHAIHPVTaVQQEWSLLTRNLEKGVVPT-CAELNIGIVAYSPLARNLLADTDADEPPKDWRAAHP-------RYSAENWQKNKELSKKVSKIAESNLVSAAQLSLKWLYQQaESLNV 278
                 4455555443111569******************************865422222122246778887765..78*********9998...23334556778899*******************965145689*********************9988754.......4556667777526999999999876666665.6789***************99999999999988844.......445666666777777888899999999999999998765244443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (341 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       138  (0.0336421); expected 82.0 (0.02)
Passed bias filter:                      114  (0.0277913); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.27u 0.15s 00:00:00.42 Elapsed: 00:00:00.71
# Mc/sec: 633.92
//
Query:       MMETSP1137-20121227|8831_1  [L=294]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (294 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        49  (0.0119454); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.15s 00:00:00.37 Elapsed: 00:00:00.62
# Mc/sec: 625.88
//
Query:       MMETSP1137-20121227|8833_1  [L=208]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (208 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        94  (0.0229157); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.12s 00:00:00.32 Elapsed: 00:00:00.48
# Mc/sec: 571.95
//
Query:       MMETSP1137-20121227|8834_1  [L=259]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (259 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        91  (0.0221843); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.15s 00:00:00.37 Elapsed: 00:00:00.81
# Mc/sec: 422.04
//
Query:       MMETSP1137-20121227|8835_1  [L=77]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (77 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        70  (0.0170648); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.13s 00:00:00.26 Elapsed: 00:00:00.28
# Mc/sec: 362.97
//
Query:       MMETSP1137-20121227|8836_1  [L=453]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.2e-07   29.1  10.4     0.0057   13.6   0.0    3.0  3  TIGR01628 PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family
    8.5e-07   26.1   2.9      0.013   12.4   0.0    3.0  3  TIGR01622 SF-CC1: splicing factor, CC1-like family
    0.00075   17.0   3.5        7.3    3.9   4.1    3.2  3  TIGR01661 ELAV_HUD_SF: ELAV/HuD family splicing factor
  ------ inclusion threshold ------
        1.9    5.0  10.5         24    1.3   7.6    2.1  2  TIGR01648 hnRNP-R-Q: hnRNP-R, Q splicing factor family


Domain annotation for each model (and alignments):
>> TIGR01628  PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   7.2     0.088        90     405     501 ..      78     162 ..      56     201 .. 0.39
   2 !   13.6   0.0   5.6e-06    0.0057     295     332 ..     241     279 ..     224     281 .. 0.89
   3 !   12.0   0.0   1.8e-05     0.018     328     358 ..     385     415 ..     381     424 .. 0.90

  Alignments for each domain:
  == domain 1    score: -0.2 bits;  conditional E-value: 0.088
   TIGR01628 405 qqqavvtqavkqqlasqplnfkinqmmlstqnpskpeapnalaqlaqqrlqaqgrrnlnnr.nrnvlgnmnkkqqnaaskanqanvkaqpqaqsknqm 501
                 q+q  + q+++q+la  +     +q+m+  q   + +a+ + a +++q++       ++++ ++   g+  + +++aa+ ++ ++++a+    +++ m
  MMETSP1137-20121227|8836_1  78 QHQLAHLQQQHQMLAAAAA---QQQQMMAAQAAAAAAAAASAASMGAQGA-------AQRGaAHPACGAAVNPAVQAATAQAATAHTAAV---QPAVM 162
                 2222333444444443332...2233333333333444444555555543.......333322222222222222222222222222222...11112 PP

  == domain 2    score: 13.6 bits;  conditional E-value: 5.6e-06
   TIGR01628 295 dtvddekLrelFeefGeitSakvmld.ekekSkgFGFVc 332
                 d++  e+Lr++F+++G++t a + +d e++ Skg  FV+
  MMETSP1137-20121227|8836_1 241 DAFSAEDLRREFSRYGTVTRAEMTIDkETGWSKGPHFVA 279
                 67889********************9899*****99996 PP

  == domain 3    score: 12.0 bits;  conditional E-value: 1.8e-05
   TIGR01628 328 FGFVcfssqeeAnkAvtelhgkilngkPLyv 358
                 FGFV+f+s+ eA +A+  +hg  ++g+ + v
  MMETSP1137-20121227|8836_1 385 FGFVSFTSPIEADAALAAIHGSWVDGREMKV 415
                 ************************9997766 PP

>> TIGR01622  SF-CC1: splicing factor, CC1-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   3.0     0.054        56     311     400 ..      80     160 ..      58     184 .. 0.47
   2 !    8.3   0.0   0.00022      0.22     232     266 ..     244     278 ..     237     281 .. 0.91
   3 !   12.4   0.0   1.2e-05     0.013     263     297 ..     385     419 ..     382     433 .. 0.89

  Alignments for each domain:
  == domain 1    score: 0.4 bits;  conditional E-value: 0.054
   TIGR01622 311 fedsfdeseqsgldlnteereqldekldrddekgsgalaiagtdskavqmaklsrdglvaklipsrelqaslsetsvlkalaeasfvpse 400
                 +  ++++++q+ ++  +++++++ ++ +    +   a+  a ++ +++   +  +++  a +         + + ++++a+a+++ v++ 
  MMETSP1137-20121227|8836_1  80 QLAHLQQQHQMLAAAAAQQQQMMAAQAAAAAAA---AASAASMGAQGAAQRGAAHPACGAAVN------PAVQAATAQAATAHTAAVQPA 160
                 333355555555444444444433333333211...122222222222222222222222222......223344444455555555543 PP

  == domain 2    score: 8.3 bits;  conditional E-value: 0.00022
   TIGR01622 232 tEqeLrqiFepFGeielvqlqkDpetGrskGyGFi 266
                 + ++Lr  F  +G +   +++ D+etG skG  F+
  MMETSP1137-20121227|8836_1 244 SAEDLRREFSRYGTVTRAEMTIDKETGWSKGPHFV 278
                 5689***************************8887 PP

  == domain 3    score: 12.4 bits;  conditional E-value: 1.2e-05
   TIGR01622 263 yGFiqFsdaeeakeAleklNGlelAGReikvglas 297
                 +GF+ F+   ea +Al ++ G  + GRe+kv  ++
  MMETSP1137-20121227|8836_1 385 FGFVSFTSPIEADAALAAIHGSWVDGREMKVEKTK 419
                 9******************************8854 PP

>> TIGR01661  ELAV_HUD_SF: ELAV/HuD family splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    3.9   4.1    0.0071       7.3     206     263 ..      61     118 ..      24     170 .. 0.69
   2 !    3.8   0.0    0.0073       7.5     101     136 ..     243     278 ..     221     282 .. 0.69
   3 ?    3.0   0.0     0.013        13     312     342 ..     385     415 ..     382     423 .. 0.78

  Alignments for each domain:
  == domain 1    score: 3.9 bits;  conditional E-value: 0.0071
   TIGR01661 206 aplhkaaakfrlsaldflavlakrlqqhavaqqaaaqrasplaadgavaglaagaqia 263
                 ++l+ +++ ++ ++l+ +  la+ +qqh +   aaaq++ ++aa++a+a+ aa +  +
  MMETSP1137-20121227|8836_1  61 TALASEMNWLKTHNLQLQHQLAHLQQQHQMLAAAAAQQQQMMAAQAAAAAAAAASAAS 118
                 4555556666677777777777777777776666666666666665554443333222 PP

  == domain 2    score: 3.8 bits;  conditional E-value: 0.0073
   TIGR01661 101 mtqkeleslfspfGkiitsrilsdnvtdlskGvGfi 136
                  + ++l   fs++G +  + +  d+ t+ skG  f+
  MMETSP1137-20121227|8836_1 243 FSAEDLRREFSRYGTVTRAEMTIDKETGWSKGPHFV 278
                 455667777777777777777777777777776665 PP

  == domain 3    score: 3.0 bits;  conditional E-value: 0.013
   TIGR01661 312 ygfvsmtnydeaalailslnGytlgnrvlqv 342
                 +gfvs t   ea  a++++ G  + +r ++v
  MMETSP1137-20121227|8836_1 385 FGFVSFTSPIEADAALAAIHGSWVDGREMKV 415
                 7888888888888888888888888887776 PP

>> TIGR01648  hnRNP-R-Q: hnRNP-R, Q splicing factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   7.6     0.024        24     458     536 ..      85     167 ..      21     190 .. 0.57
   2 ?    0.8   0.0     0.035        36     271     305 ..     385     419 ..     382     432 .. 0.88

  Alignments for each domain:
  == domain 1    score: 1.3 bits;  conditional E-value: 0.024
   TIGR01648 458 griltlekiiipaavsqdpaiaalappkasaavreakstpaeyqlrtlg..vrtsagn.qriatagakak....aydgyaaPdata 536
                 ++    +++++ aa++q+  +aa a+++a+aa + a  ++    +r+ +    + a n    a+++ +a+    a ++  +P at+
  MMETSP1137-20121227|8836_1  85 QQ---QHQMLAAAAAQQQQMMAAQAAAAAAAAASAASMGAQGAAQRGAAhpACGAAVNpAVQAATAQAATahtaAVQPAVMPAATQ 167
                 33...345666666666655544444444444444433333334444441123333332222222233330000344444444444 PP

  == domain 2    score: 0.8 bits;  conditional E-value: 0.035
   TIGR01648 271 yafvhfedredavkamdelnGkeleGseievtlak 305
                 + fv f++  +a  a+ ++ G  ++G e+ v  +k
  MMETSP1137-20121227|8836_1 385 FGFVSFTSPIEADAALAAIHGSWVDGREMKVEKTK 419
                 68**************************9997766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (453 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       351  (0.085568); expected 82.0 (0.02)
Passed bias filter:                      109  (0.0265724); expected 82.0 (0.02)
Passed Vit filter:                        23  (0.00560702); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.44u 0.15s 00:00:00.59 Elapsed: 00:00:01.55
# Mc/sec: 385.75
//
Query:       MMETSP1137-20121227|8837_1  [L=256]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.017   11.9   0.0      0.024   11.4   0.0    1.3  1  TIGR02037 degP_htrA_DO: peptidase Do


Domain annotation for each model (and alignments):
>> TIGR02037  degP_htrA_DO: peptidase Do
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   5.9e-06     0.024     258     288 ..      74     104 ..      67     155 .. 0.83

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 5.9e-06
   TIGR02037 258 akGalvaevlkgspAekaGlkaGDvilkvng 288
                 a+G +v +v ++s A++ Gl++GD+i++v+ 
  MMETSP1137-20121227|8837_1  74 ARGGIVYNVKPDSLASSFGLRRGDLITSVQT 104
                 5788999999999999999999999999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (256 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       129  (0.0314481); expected 82.0 (0.02)
Passed bias filter:                      115  (0.0280351); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.22u 0.15s 00:00:00.37 Elapsed: 00:00:00.39
# Mc/sec: 866.39
//
Query:       MMETSP1137-20121227|8838_1  [L=442]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (442 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       237  (0.0577767); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.19s 00:00:00.50 Elapsed: 00:00:00.56
# Mc/sec: 1041.77
//
Query:       MMETSP1137-20121227|8839_1  [L=261]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (261 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        89  (0.0216967); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.17s 00:00:00.41 Elapsed: 00:00:00.54
# Mc/sec: 637.95
//
Query:       MMETSP1137-20121227|8840_1  [L=190]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (190 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        32  (0.00780107); expected 82.0 (0.02)
Passed bias filter:                       29  (0.00706972); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.16s 00:00:00.34 Elapsed: 00:00:00.80
# Mc/sec: 313.47
//
Query:       MMETSP1137-20121227|8841_1  [L=163]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (163 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       103  (0.0251097); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.17s 00:00:00.37 Elapsed: 00:00:00.51
# Mc/sec: 421.85
//
Query:       MMETSP1137-20121227|8842_1  [L=908]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
          0 1227.9   0.0          0 1227.7   0.0    1.0  1  TIGR01828 pyru_phos_dikin: pyruvate, phosphate dikinase
    3.2e-49  165.8   0.4    4.3e-38  129.0   0.0    4.1  3  TIGR01418 PEP_synth: phosphoenolpyruvate synthase
    2.3e-34  116.6   0.0    4.4e-25   85.9   0.0    2.6  2  TIGR01417 PTS_I_fam: phosphoenolpyruvate-protein phosphotransferase


Domain annotation for each model (and alignments):
>> TIGR01828  pyru_phos_dikin: pyruvate, phosphate dikinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ! 1227.7   0.0         0         0       9     864 ..      48     905 ..      30     906 .. 0.97

  Alignments for each domain:
  == domain 1    score: 1227.7 bits;  conditional E-value: 0
   TIGR01828   9 egnkelkellGgkGanlaemtklglpvPqGftitteaCkeylkegkklpeelaeevkealklleektgkkfgdeenpllvsvrsGaavsmPGmmdtvlnlGlndeavkglakltgnerfaydsyrrliqmfgdvvleipkelfekaleelkkekdvkldteltaedlkeliekykkvveeakgkefpqdpkeqlelaikavfdsWknkravvyrrlnkipedlgtavniqsmvfGnmGedsgtGvaftrnPstGekklfgeflinaqGedvvaGirtpeelkel.aempevykelleiaeklekhyrdlqdieftiergklyllqtrtgkrtakaavriavdlveeglitkeeailrvepesldqllhprldesakk....evlakglpasPGaavGkvvfsaeeavelaekgkkvilvreetspedieGmavaegiltarGGmtshaavvargmGkccvsGa.eelkvdeekktlkigdkelkeGdiisidGstGevylGevkliepevsedfeellewadkvrklkvranadtpedakkalkfGaeGiGlcrtehmffdeerikavrelilaeseeerkaalekllplqkedfkelfkvmegkpvtirlldPPlheflPeteeevkklaealekeaekilkkveeleevnPmlGhrGvrlgvtyPeiyemqvraileaavevkkegievkpeimiPlvaekeelkilkeeveevaeeveeekgvkleyeiGtmieipraaltadkiae.eadffsfGtndltqmtfgfsrddaekflekylekkilekdPfesldqeGvGelirlavekgrktrpnlkvGiCGehgGdPesieflhkigldyvscspyrvPiarlaaaqaa 864
                  ++++lk llGgkGa+la+m+++glpvP+Gftitte+C  y k +++lp+ +++ v++ + l+e++ g+++gde+ pll+svrsGaa+smPGmmdtvlnlGlnd +v+++ak t ner a+dsyrr+++mfgdvv++ip+   e  l++lkk  +v+ d++l +++lkel+++yk+v+ +++  efp dp+eql +ai+avfdsW+++ra++yr+l++i+  +gtavn+q+mvfGnmG++sgtGv ftr+P+ G ++lfgefl+naqGedvvaGirtp+++ +l  ++pe+y +l+++++ le++++d+qd+eft+++g l++lqtr+gkr+++aav iavd+ve+gli++eeail+v+pe+ld +lh+++ + ++     +v+akgl+asPGaavG  +fs+ e ++  + g + il+r+etsped++Gm++a+giltarGG+tshaavvarg+Gk+cv+G+ e++ vdeek+ +kigd  ++eGd +s++G+tGev+lG++++ +pe+s+++ +++e+ ++v++++v anadt  da++a++ Ga GiGlcrte mffd  ++++vr++ila+se +r+aa+++llp q++df+++f++m+ +pvtirlldPPlheflP++ e  ++la+a+ ++++ ++ ++++++e nPmlG+rG+rlg+t Pei++mqvrai+eaa++vk+ g + kp +miPl+++++e++++k+ ++ +ae+v++e++ +l +eiGtmie+praal + ++a+  a+ffs+Gtndltqmtfgfsrdd++ fl+ yl +++l++dPf+++d+e vG+l+r+++e+grk++p+lkvG+CGehgGdP+sief+ ++  dyvscsp+rvP+a laaa+aa
  MMETSP1137-20121227|8842_1  48 SPKENLKWLLGGKGAGLAQMASIGLPVPPGFTITTEVCAVYGKYNRNLPDAIWSXVMDGVLLVEKQLGRTLGDETSPLLLSVRSGAAISMPGMMDTVLNLGLNDVTVEAIAKETANERCAFDSYRRFLDMFGDVVMGIPHADXEAELDALKKSSNVEHDSDLSVDQLKELVQRYKAVYAKHN-IEFPDDPHEQLGKAIHAVFDSWDSTRAKKYRSLQNITGLVGTAVNVQAMVFGNMGDTSGTGVLFTRCPNDGTNELFGEFLVNAQGEDVVAGIRTPKPIAQLrDDFPEIYAQLRRTCDRLEEYFKDMQDVEFTVQEGTLFILQTRNGKRSGAAAVAIAVDMVEQGLISMEEAILQVTPEHLDTMLHNQFTNVHAVeytsAVIAKGLNASPGAAVGVACFSSAEVEHKRKDGISAILIRHETSPEDVAGMFAADGILTARGGKTSHAAVVARGWGKTCVCGVgESMVVDEEKREVKIGDVLIREGDTLSLNGTTGEVLLGAMPTSKPEISGKLGKFMEFVQEVKTMEVLANADTGADAAMARRRGAGGIGLCRTEXMFFD--HLPLVRHMILATSEADRQAAVDQLLPQQRQDFESIFRAMDTLPVTIRLLDPPLHEFLPQQAE--QELADAVXMSMADLAVAIDNMRECNPMLGLRGCRLGITRPEITQMQVRAIIEAALNVKQSGGNPKPKVMIPLISSVSEFEHQKQLISATAEAVFAERNESLAFEIGTMIEVPRAALLSASVAAaGAEFFSYGTNDLTQMTFGFSRDDVGTFLPFYLTNNLLPTDPFQTIDKEAVGQLVRISTEEGRKAKPGLKVGVCGEHGGDPASIEFFATLEHDYVSCSPFRVPVACLAAARAA 905
                 56788999****************************************************************************************************************************************************************************99.77***************************************************************************************************999************************************************************************************876544345599*******************************************************************************9456899*******************************************************************************************9..8*********************************************************9765..799****************************************************************************************************************99888865169************************************************************************************************************96 PP

>> TIGR01418  PEP_synth: phosphoenolpyruvate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.2   0.0   5.1e-05      0.07      15      51 ..      56      88 ..      49     107 .. 0.82
   2 !   18.1   0.0   1.1e-07   0.00014     145     230 ..     238     325 ..     235     335 .. 0.80
   3 !  129.0   0.0   3.1e-41   4.3e-38     323     769 ..     401     891 ..     330     904 .. 0.70

  Alignments for each domain:
  == domain 1    score: 9.2 bits;  conditional E-value: 5.1e-05
   TIGR01418 15 lvGGknaslGelikelseagvkvPegfvvtaeayref 51
                l GGk+a+l  + +    +g++vP+gf +t+e    +
  MMETSP1137-20121227|8842_1 56 LLGGKGAGLAQMAS----IGLPVPPGFTITTEVCAVY 88
                68*********999....************9976655 PP

  == domain 2    score: 18.1 bits;  conditional E-value: 1.1e-07
   TIGR01418 145 eevlekvkkvfasLftdraisYreskgfdhekvalavvvqkmvrsdla...ssGvmftidtetGekdavliesayGLGeavvsGavtPD 230
                 e++ ++++ vf s  + ra +Yr+ +++    v  av vq mv  +++    +Gv+ft  ++ G+++      +   Ge vv G  tP 
  MMETSP1137-20121227|8842_1 238 EQLGKAIHAVFDSWDSTRAKKYRSLQNITG-LVGTAVNVQAMVFGNMGdtsGTGVLFTRCPNDGTNELFGEFLVNAQGEDVVAGIRTPK 325
                 5666899*********************86.59**********87765211579**********99643222344569****9999886 PP

  == domain 3    score: 129.0 bits;  conditional E-value: 3.1e-41
   TIGR01418 323 ivqarPetvqsrkkkenvvekaelke.................kgkvlvkGlavsskiasGkvkvildlkeldkleeG..dilvtdmtdPDwePvmkkasaivtdeGGrtshaaivarelGiPavvGtgdatkklkdgeevtv...scaegdeGvvyeg...........kleeeve....evelealpetatkilmnvgnPekaerfaelpadGvGLariefiisnvikahPlalleledlkeeekaeieeliaG...ekkelf..vdklaegiakva...aafyPkpvvvrlsDfksneyrkliGGekyepeeenPmlGfrGvsrylseeyeeafrlevkalk....kvreemGltnvkvmiPfvrtveevkkvleile..eeglkkgkng...levyvmvevPsnvlladefakl.vDgfsiGsnDltqltLgvDrdse.......lvakl.....fder.neavlkliekaikaakek..gkkvsiCGqapsdypelvefLveeGidsislnp 769
                 i+q  Pe                  +                  + v++kGl +s++ a G +      +  +k ++G   il+ + t P+ +  m  a +i+t +GG+tshaa+var  G   v G+g++    ++ +ev +      egd+     g           + ++e++    +    +  + ++++l n  +   a  + + +a G+GL r e +  +++     ++l +   +++ +a +++l+     + +++f  +d l   i+ +    ++f P+     l D+     + l     ++ +e nPmlG rG +  + +   e  ++ v+a+     +v++  G    kvmiP++ +v+e ++ +++++  +e +  ++n+   +e+  m+evP ++ll   +a    ++fs G+nDltq+t g  rd+        l  +l     f+   +eav +l++   +  ++   g kv++CG  +   p+ +ef      d +s  p
  MMETSP1137-20121227|8842_1 401 ILQVTPE------------------HldtmlhnqftnvhaveyTSAVIAKGLNASPGAAVGVACFSS-AEVEHKRKDGisAILIRHETSPEDVAGMFAADGILTARGGKTSHAAVVARGWGKTCVCGVGESMVVDEEKREVKIgdvLIREGDTLSLN-GttgevllgampTSKPEISgklgKFMEFVQEVKTMEVLANADTGADAAMARRRGAGGIGLCRTEXMFFDHLPLVRHMILAT--SEADRQAAVDQLLPQqrqDFESIFraMDTLPVTIRLLDpplHEFLPQQAEQELADAVXMSMADLAVAI-DNMRECNPMLGLRGCRLGITR--PEITQMQVRAIIeaalNVKQSGGNPKPKVMIPLISSVSEFEHQKQLISatAEAVFAERNEslaFEIGTMIEVPRAALLSASVAAAgAEFFSYGTNDLTQMTFGFSRDDVgtflpfyLTNNLlptdpFQTIdKEAVGQLVRISTEEGRKAkpGLKVGVCGEHGG-DPASIEFFATLEHDYVSCSP 891
                 4444444..................04445555555555555578****************986543.3333444555338***********************************************99877666666665411133444432222.123444444888555555554535555566667789999999999999999******************999988888887..4455566666666442223334453378999999988533379*********************9988.99*************999988..77777777776522227999999**************9998887776411344544444323389999**********99999988********************963222221111222444456654157899999988888775433789999999998.58888888777777777666 PP

>> TIGR01417  PTS_I_fam: phosphoenolpyruvate-protein phosphotransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.7   0.0   1.4e-10     2e-07     159     304 ..     466     609 ..     450     647 .. 0.71
   2 !   85.9   0.0   3.2e-28   4.4e-25     347     526 ..     690     891 ..     684     900 .. 0.80

  Alignments for each domain:
  == domain 1    score: 27.7 bits;  conditional E-value: 1.4e-10
   TIGR01417 159 aedLtPsetaqlnkkyvkGFlteeGgktsHaailarsleiPavvgtkaetsqvk.............ngdtviidgekgevivnpsseeikkyeekkeavseekaelaklkdkdaktkdgtkvelaanigtvkdlesvereggegiGLfRtEFlymssd 304
                  ++  P + a +      G lt+ GgktsHaa++ar  +   v g+   +   +             +gdt+ ++g+ gev +     +  +   k  + +e+++             + +++e+ an  t  d  ++ r g+ giGL RtE +++++ 
  MMETSP1137-20121227|8842_1 466 RHETSPEDVAGMF--AADGILTARGGKTSHAAVVARGWGKTCVCGVGESMVVDEekrevkigdvlirEGDTLSLNGTTGEVLLGAMPTSKPEISGKLGKFMEFVQ-------------EVKTMEVLANADTGADAAMARRRGAGGIGLCRTEXMFFDHL 609
                 5555555555443..34799******************9999988776544333112233444444555555555555555554444333333333333333333.............345568999****************************9864 PP

  == domain 2    score: 85.9 bits;  conditional E-value: 3.2e-28
   TIGR01417 347 pkeenPflgyRaiRlllekeeilrtqlrAilrAs....ayG...klkvliPmvltveEikevkqlleeekqelkeegkaisenievGvmiEiPsaaliaekla.kevdFfsiGtnDLiqYtlavdRene...kvsnlyqplnP..........avlrliklvieaakke..giwvgvCGElagDelaillllGlGlrelsmsa 526
                  +e nP+lg R  Rl + + ei + q+rAi+ A+    + G   k kv+iP + +v+E+++ kql++ + + +    +  s  +e+G+miE+P aal++ ++a    +Ffs GtnDL+q t++ +R       + +l ++l P          av +l++   e+++k   g +vgvCGE +gD ++i ++  l  + +s s+
  MMETSP1137-20121227|8842_1 690 MRECNPMLGLRGCRLGITRPEITQMQVRAIIEAAlnvkQSGgnpKPKVMIPLISSVSEFEHQKQLISATAEAVFA-ERNESLAFEIGTMIEVPRAALLSASVAaAGAEFFSYGTNDLTQMTFGFSRDDVgtfLPFYLTNNLLPtdpfqtidkeAVGQLVRISTEEGRKAkpGLKVGVCGEHGGDPASIEFFATLEHDYVSCSP 891
                 5899***************************9973332222344679*******************988777655.46667899*************9988861569*******************7642224556665554433344444458999******9998643399***************999988887777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (908 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       143  (0.034861); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.75u 0.17s 00:00:00.92 Elapsed: 00:00:00.93
# Mc/sec: 1288.67
//
Query:       MMETSP1137-20121227|8843_1  [L=283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (283 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       166  (0.0404681); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.17s 00:00:00.41 Elapsed: 00:00:00.39
# Mc/sec: 957.77
//
Query:       MMETSP1137-20121227|8844_1  [L=590]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.1e-60  196.8   0.0    4.4e-35  117.6   0.0    3.4  3  TIGR00365 TIGR00365: monothiol glutaredoxin, Grx4 family
    3.7e-13   47.4   0.0    1.1e-12   45.9   0.0    1.8  1  TIGR01068 thioredoxin: thioredoxin
    6.3e-12   43.4   0.0    1.1e-07   29.9   0.0    4.0  4  TIGR02180 GRX_euk: glutaredoxin
    1.2e-11   42.5   0.0    1.5e-07   29.4   0.0    3.6  3  TIGR02181 GRX_bact: glutaredoxin 3
    4.6e-09   34.5   1.6      0.059   11.8   0.0    3.7  3  TIGR02196 GlrX_YruB: glutaredoxin-like protein, YruB-family
    5.8e-05   21.2   0.0    0.00025   19.2   0.0    2.0  1  TIGR01126 pdi_dom: protein disulfide-isomerase domain
    7.1e-05   20.5   0.0     0.0063   14.3   0.0    3.3  4  TIGR02190 GlrX-dom: glutaredoxin-family domain
    0.00041   18.1   0.0      0.013   13.3   0.0    2.6  2  TIGR02189 GlrX-like_plant: glutaredoxin-like family
    0.00062   18.1   0.0       0.01   14.2   0.0    2.3  2  TIGR00014 arsC: arsenate reductase (glutaredoxin)
    0.00077   17.7   2.3        1.8    6.9   0.0    3.8  3  TIGR02200 GlrX_actino: glutaredoxin-like protein
     0.0017   16.0   0.1      0.092   10.3   0.0    2.6  3  TIGR02187 GlrX_arch: glutaredoxin-like domain protein
     0.0049   15.0   0.0       0.32    9.1   0.0    2.4  2  TIGR01617 arsC_related: transcriptional regulator, Spx/MgsR family


Domain annotation for each model (and alignments):
>> TIGR00365  TIGR00365: monothiol glutaredoxin, Grx4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.7   0.0   5.2e-18   1.8e-15       5      63 ..     117     175 ..     113     182 .. 0.88
   2 !   20.4   0.0   2.5e-07   8.6e-05      68      97 ..     448     477 ..     445     479 .. 0.92
   3 !  117.6   0.0   1.3e-37   4.4e-35       5      97 ..     490     582 ..     486     583 .. 0.95

  Alignments for each domain:
  == domain 1    score: 54.7 bits;  conditional E-value: 5.2e-18
   TIGR00365   5 ikeqvkenkvvlymkGtpelpqCGfsakavqilkalgvefatvnvledeeireelkeys 63 
                 +++  ++++v+l+mkG++++p+CGfs ++v+il++ +++f+t+++l+dee+r++lk   
  MMETSP1137-20121227|8844_1 117 LSALTRRSPVMLFMKGSADAPRCGFSRQIVEILQEEKIQFETFDILTDEEVRQGLKXVL 175
                 556667899**********************************************9765 PP

  == domain 2    score: 20.4 bits;  conditional E-value: 2.5e-07
   TIGR00365  68 iPqlyvkgelvGGcdivlelyesgelkkll 97 
                 + qly +g+l+GG div+e+ e+gel +++
  MMETSP1137-20121227|8844_1 448 YAQLYADGKLLGGLDIVREMREEGELADAV 477
                 57************************9865 PP

  == domain 3    score: 117.6 bits;  conditional E-value: 1.3e-37
   TIGR00365   5 ikeqvkenkvvlymkGtpelpqCGfsakavqilkalgvefatvnvledeeireelkeysnWPtiPqlyvkgelvGGcdivlelyesgelkkll 97 
                 +++  ++ +vvl+mkG++++p+CGfs+++v+il+  +v+f+t+++l+de++r++lk+ysnWPt+Pqly +g+l+GG div+e+ e+gel+++l
  MMETSP1137-20121227|8844_1 490 LHALTHSAPVVLFMKGSRDAPRCGFSKTIVEILQGEKVSFETFDILTDEDVRQGLKTYSNWPTFPQLYADGKLIGGLDIVREMREEGELRDAL 582
                 66677889*********************************************************************************9875 PP

>> TIGR01068  thioredoxin: thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.9   0.0   3.2e-15   1.1e-12      15      90 ..       8      82 ..       2      92 .. 0.90

  Alignments for each domain:
  == domain 1    score: 45.9 bits;  conditional E-value: 3.2e-15
   TIGR01068 15 klvlvDfwAeWCgpCkmlaPvleelakeleekvkvvKlnvdeeqeiaakygirsiPtlllfkngkevkrvvGakpk 90
                  v+v   A+W  pC  +  v++el++e++  +++v+l+ d+ +++ +++g++s+P  l++++gk+++ v+Ga+  
  MMETSP1137-20121227|8844_1  8 GSVVVSCTATWAAPCAQMNNVFAELSAEYT-ALTFVQLDADDFPDLCERFGVESVPYFLFLHDGKVTEAVIGANAP 82
                47999*********************9999.5****************************************9864 PP

>> TIGR02180  GRX_euk: glutaredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       5.6   1.9e+03      12      35 ..      22      46 ..      17      49 .. 0.74
   2 ?    5.2   0.0     0.016       5.5       7      38 ..     137     166 ..     126     183 .. 0.74
   3 ?    3.5   0.0     0.053        18      57      82 ..     450     475 ..     447     477 .. 0.91
   4 !   29.9   0.0   3.1e-10   1.1e-07       7      83 ..     510     581 ..     499     582 .. 0.89

  Alignments for each domain:
  == domain 1    score: -3.0 bits;  conditional E-value: 5.6
   TIGR02180 12 ckkakelLkklkvkka.levveldk 35
                c+++++++++l+ + + l +v+ld 
  MMETSP1137-20121227|8844_1 22 CAQMNNVFAELSAEYTaLTFVQLDA 46
                7888888888876665577888875 PP

  == domain 2    score: 5.2 bits;  conditional E-value: 0.016
   TIGR02180   7 syCpYckkakelLkklkvkkalevveldklen 38 
                 + C +++++ e+L+++k++  +e+ ++   e+
  MMETSP1137-20121227|8844_1 137 PRCGFSRQIVEILQEEKIQ--FETFDILTDEE 166
                 46**************999..88888755443 PP

  == domain 3    score: 3.5 bits;  conditional E-value: 0.053
   TIGR02180  57 rifingkfiGGsddlkklekkgklee 82 
                 +++  gk +GG d +++++++g+l++
  MMETSP1137-20121227|8844_1 450 QLYADGKLLGGLDIVREMREEGELAD 475
                 68999******************987 PP

  == domain 4    score: 29.9 bits;  conditional E-value: 3.1e-10
   TIGR02180   7 syCpYckkakelLkklkvkkalevveldklengselqdyLkeltgqrtVPrifingkfiGGsddlkklekkgkleel 83 
                 + C ++k + e+L+ +kv+  +e+ ++      +++++ Lk +++  t P+++  gk iGG d +++++++g+l+++
  MMETSP1137-20121227|8844_1 510 PRCGFSKTIVEILQGEKVS--FETFDILTD---EDVRQGLKTYSNWPTFPQLYADGKLIGGLDIVREMREEGELRDA 581
                 46**************999..888888665...89***************************************976 PP

>> TIGR02181  GRX_bact: glutaredoxin 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.8   0.0    0.0051       1.7       7      39 ..     137     169 ..     135     178 .. 0.91
   2 ?    1.4   0.0      0.25        84      52      77 ..     449     474 ..     440     476 .. 0.90
   3 !   29.4   0.0   4.4e-10   1.5e-07       7      78 ..     510     580 ..     508     582 .. 0.95

  Alignments for each domain:
  == domain 1    score: 6.8 bits;  conditional E-value: 0.0051
   TIGR02181   7 ksCpycsrAkalLeekgvefeeievdkdkeare 39 
                 + C+++++  ++L+e++++fe +++ +d+e r+
  MMETSP1137-20121227|8844_1 137 PRCGFSRQIVEILQEEKIQFETFDILTDEEVRQ 169
                 57***********************99999887 PP

  == domain 2    score: 1.4 bits;  conditional E-value: 0.25
   TIGR02181  52 PQifigdvhvGGcddLlaleregkLd 77 
                  Q++ + + +GG d + ++ +eg+L 
  MMETSP1137-20121227|8844_1 449 AQLYADGKLLGGLDIVREMREEGELA 474
                 5999*******************995 PP

  == domain 3    score: 29.4 bits;  conditional E-value: 4.4e-10
   TIGR02181   7 ksCpycsrAkalLeekgvefeeievdkdkeareemierskgrrtvPQifigdvhvGGcddLlaleregkLdk 78 
                 + C+++++  ++L+ ++v+fe +++ +d++ r+ +   s+   t+PQ++ + + +GG d + ++ +eg+L +
  MMETSP1137-20121227|8844_1 510 PRCGFSKTIVEILQGEKVSFETFDILTDEDVRQGLKTYSN-WPTFPQLYADGKLIGGLDIVREMREEGELRD 580
                 57*************************************6.****************************976 PP

>> TIGR02196  GlrX_YruB: glutaredoxin-like protein, YruB-family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.3   0.0    0.0021      0.71       6      54 ..      15      64 ..      10      77 .. 0.90
   2 !   11.2   0.0   0.00026     0.088       8      45 ..     137     174 ..     135     182 .. 0.87
   3 !   11.8   0.0   0.00017     0.059       8      65 ..     510     567 ..     508     570 .. 0.91

  Alignments for each domain:
  == domain 1    score: 8.3 bits;  conditional E-value: 0.0021
   TIGR02196  6 ttpwCppCkkakeyLkskgiafeeid.vekdsaaaeellkklgqrsvPvi 54
                t +w  pC ++ + + +   ++ +++ v+ d+ +  +l ++ g  svP  
  MMETSP1137-20121227|8844_1 15 TATWAAPCAQMNNVFAELSAEYTALTfVQLDADDFPDLCERFGVESVPYF 64
                78999*******************987999******************75 PP

  == domain 2    score: 11.2 bits;  conditional E-value: 0.00026
   TIGR02196   8 pwCppCkkakeyLkskgiafeeidvekdsaaaeellkk 45 
                 p C+  +++ e L+++ i+fe++d+ +d++ ++ l  +
  MMETSP1137-20121227|8844_1 137 PRCGFSRQIVEILQEEKIQFETFDILTDEEVRQGLKXV 174
                 789999***********************999887665 PP

  == domain 3    score: 11.8 bits;  conditional E-value: 0.00017
   TIGR02196   8 pwCppCkkakeyLkskgiafeeidvekdsaaaeellkklgqrsvPvivigekivvGFd 65 
                 p C+  k + e L+ + ++fe++d+ +d+  ++ l   ++    P++  ++k++ G d
  MMETSP1137-20121227|8844_1 510 PRCGFSKTIVEILQGEKVSFETFDILTDEDVRQGLKTYSNWPTFPQLYADGKLIGGLD 567
                 7899999***************************9999999999*9999999887765 PP

>> TIGR01126  pdi_dom: protein disulfide-isomerase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   0.0   7.2e-07   0.00025      16      83 ..       9      72 ..       3      85 .. 0.91

  Alignments for each domain:
  == domain 1    score: 19.2 bits;  conditional E-value: 7.2e-07
   TIGR01126 16 dvlvefyaPWCGhCkklaPeyeklakelkkeeekvkiakvdataekelaskfkvsgfPtlkffkkgkk 83
                +v+v  +a W   C ++  ++ +l++e+++    ++  ++da+   +l+++f+v++ P   f+++gk 
  MMETSP1137-20121227|8844_1  9 SVVVSCTATWAAPCAQMNNVFAELSAEYTA----LTFVQLDADDFPDLCERFGVESVPYFLFLHDGKV 72
                7899***********************995....899**************************99985 PP

>> TIGR02190  GlrX-dom: glutaredoxin-family domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0       1.6   5.6e+02      44      59 ..      88     104 ..      70     106 .. 0.68
   2 ?   -2.4   0.0       2.9   9.9e+02      16      37 ..     137     158 ..     126     169 .. 0.75
   3 ?    1.3   0.0      0.21        71      59      75 ..     449     465 ..     433     467 .. 0.85
   4 !   14.3   0.0   1.8e-05    0.0063      16      75 ..     510     570 ..     494     572 .. 0.78

  Alignments for each domain:
  == domain 1    score: -1.6 bits;  conditional E-value: 1.6
   TIGR02190  44 irtrsl.ravtGattvP 59 
                 ++  +l  a+ G  tvP
  MMETSP1137-20121227|8844_1  88 VKQNALtAAIHGDATVP 104
                 44444415899999999 PP

  == domain 2    score: -2.4 bits;  conditional E-value: 2.9
   TIGR02190  16 pGCPfCakakavLkekGldfee 37 
                 p C f  +  + L+e+ ++fe 
  MMETSP1137-20121227|8844_1 137 PRCGFSRQIVEILQEEKIQFET 158
                 5688888889999999999874 PP

  == domain 3    score: 1.3 bits;  conditional E-value: 0.21
   TIGR02190  59 PqvfinGkliGgsdele 75 
                  q + +Gkl+Gg d ++
  MMETSP1137-20121227|8844_1 449 AQLYADGKLLGGLDIVR 465
                 5999********99775 PP

  == domain 4    score: 14.3 bits;  conditional E-value: 1.8e-05
   TIGR02190  16 pGCPfCakakavLkekGldfe..eivLgkdirtrslravtGattvPqvfinGkliGgsdele 75 
                 p C f     + L+++ + fe  +i  ++d+r + l+  +   t Pq + +GkliGg d ++
  MMETSP1137-20121227|8844_1 510 PRCGFSKTIVEILQGEKVSFEtfDILTDEDVR-QGLKTYSNWPTFPQLYADGKLIGGLDIVR 570
                 45777777778888876666533788888888.589*********************99875 PP

>> TIGR02189  GlrX-like_plant: glutaredoxin-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.0      0.14        50      64      91 ..     450     477 ..     425     484 .. 0.82
   2 !   13.3   0.0   3.8e-05     0.013       6      91 ..     495     582 ..     490     589 .. 0.79

  Alignments for each domain:
  == domain 1    score: 1.8 bits;  conditional E-value: 0.14
   TIGR02189  64 vvfvGGklvGgleevmalhlsgsLvpll 91 
                  ++  Gkl+Ggl+ v  +  +g+L + +
  MMETSP1137-20121227|8844_1 450 QLYADGKLLGGLDIVREMREEGELADAV 477
                 58999********999999999987766 PP

  == domain 2    score: 13.3 bits;  conditional E-value: 3.8e-05
   TIGR02189   6 sekavvifskss.....CClshvvkrLllelGvnPavveldkeaeakeiekallelgskeavPvvfvGGklvGgleevmalhlsgsLvpll 91 
                    +vv+f k s     C +s ++ ++l++  v+   +++  +++   + + l +++  ++ P ++  Gkl+Ggl+ v  +  +g+L + l
  MMETSP1137-20121227|8844_1 495 HSAPVVLFMKGSrdaprCGFSKTIVEILQGEKVSFETFDILTDED---VRQGLKTYSNWPTFPQLYADGKLIGGLDIVREMREEGELRDAL 582
                 566788887765555779999999999999999999999987755...55555555559*****************999999999998776 PP

>> TIGR00014  arsC: arsenate reductase (glutaredoxin)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.0     3e-05      0.01       6      65 ..     136     193 ..     134     197 .. 0.90
   2 ?    1.1   0.0      0.36   1.2e+02       7      39 ..     510     542 ..     508     550 .. 0.80

  Alignments for each domain:
  == domain 1    score: 14.2 bits;  conditional E-value: 3e-05
   TIGR00014   6 nPrCsksretLalledkgiepevvkyLknppskseLkellkklgissarellrkkeelyk 65 
                  PrC+ sr+ +++l++++i+ e  + L ++  +  Lk +l+ +++++  +  r +e+l++
  MMETSP1137-20121227|8844_1 136 APRCGFSRQIVEILQEEKIQFETFDILTDEEVRQGLKXVLELADLPA--GESRPQEALFR 193
                 5***************************************9999988..55677777776 PP

  == domain 2    score: 1.1 bits;  conditional E-value: 0.36
   TIGR00014   7 PrCsksretLalledkgiepevvkyLknppsks 39 
                 PrC+ s+  +++l+ +++  e  + L ++  + 
  MMETSP1137-20121227|8844_1 510 PRCGFSKTIVEILQGEKVSFETFDILTDEDVRQ 542
                 9*************9999988877777765555 PP

>> TIGR02200  GlrX_actino: glutaredoxin-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   0.0     0.019       6.3       6      30 ..      15      39 ..      11      49 .. 0.87
   2 !    6.9   0.0    0.0051       1.8       8      38 ..     137     167 ..     134     175 .. 0.90
   3 ?    2.8   0.0       0.1        35       8      37 ..     510     539 ..     507     552 .. 0.90

  Alignments for each domain:
  == domain 1    score: 5.2 bits;  conditional E-value: 0.019
   TIGR02200  6 atswCgyCaslkrtLdkdgaeYevv 30
                +++w   Ca++ ++  +  aeY++ 
  MMETSP1137-20121227|8844_1 15 TATWAAPCAQMNNVFAELSAEYTAL 39
                689*******************986 PP

  == domain 2    score: 6.9 bits;  conditional E-value: 0.0051
   TIGR02200   8 swCgyCaslkrtLdkdgaeYevvdiekdeea 38 
                 + Cg+ +++ + L+++ +++e+ di  dee 
  MMETSP1137-20121227|8844_1 137 PRCGFSRQIVEILQEEKIQFETFDILTDEEV 167
                 67*************************9985 PP

  == domain 3    score: 2.8 bits;  conditional E-value: 0.1
   TIGR02200   8 swCgyCaslkrtLdkdgaeYevvdiekdee 37 
                 + Cg+ +++ + L+ + +++e+ di  de+
  MMETSP1137-20121227|8844_1 510 PRCGFSKTIVEILQGEKVSFETFDILTDED 539
                 67***********************99986 PP

>> TIGR02187  GlrX_arch: glutaredoxin-like domain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.3   0.0   0.00027     0.092     142     204 ..      12      80 ..       8      88 .. 0.66
   2 ?    2.6   0.0     0.063        21       5      66 ..     109     166 ..     106     176 .. 0.82
   3 ?   -2.8   0.0       2.8   9.7e+02      16      66 ..     492     539 ..     487     547 .. 0.69

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 0.00027
   TIGR02187 142 vtptCpYCPrAvllAhklAlead...kilgevieAlEfqdlaekyqvssvPkivinkdve...efvGaq 204
                 v  t  +    +++   +A  +     ++   ++A +f+dl e+++v svP  +  +d +    ++Ga+
  MMETSP1137-20121227|8844_1  12 VSCTATWAAPCAQMNNVFAELSAeytALTFVQLDADDFPDLCERFGVESVPYFLFLHDGKvteAVIGAN 80 
                 55555555555555555555444333556667899****************988766654344677775 PP

  == domain 2    score: 2.6 bits;  conditional E-value: 0.063
   TIGR02187   5 dkeilkeeflkelknpvelvvFtdeskekCeyCeetkqlleelsevsdklkleiydldteed 66 
                 +k+ l+ + l+ l++   +++F++ s  +   C   +q++e l+e  +k+++e +d  t+e+
  MMETSP1137-20121227|8844_1 109 QKQSLHAR-LSALTRRSPVMLFMKGSA-DAPRCGFSRQIVEILQE--EKIQFETFDILTDEE 166
                 56777777.89999999******9766.5899*********9987..688888888888765 PP

  == domain 3    score: -2.8 bits;  conditional E-value: 2.8
   TIGR02187  16 elknpvelvvFtdeskekCeyCeetkqlleelsevsdklkleiydldteed 66 
                  l++   +v+F++ s  +   C   k ++e l+   +k+++e +d  t+ed
  MMETSP1137-20121227|8844_1 492 ALTHSAPVVLFMKGSR-DAPRCGFSKTIVEILQG--EKVSFETFDILTDED 539
                 5667777888888665.46778877777777764..567777777776665 PP

>> TIGR01617  arsC_related: transcriptional regulator, Spx/MgsR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.1   0.0   0.00095      0.32       7      47 ..     137     177 ..     134     183 .. 0.92
   2 ?    3.1   0.0     0.071        24       7      43 ..     510     546 ..     508     550 .. 0.88

  Alignments for each domain:
  == domain 1    score: 9.1 bits;  conditional E-value: 0.00095
   TIGR01617   7 pncttckkarrwLeangieyeeidlkedtitreelkeilsl 47 
                 p c  +++ ++ L++++i++e  d+  d+  r+ lk +l+l
  MMETSP1137-20121227|8844_1 137 PRCGFSRQIVEILQEEKIQFETFDILTDEEVRQGLKXVLEL 177
                 78******************************999999876 PP

  == domain 2    score: 3.1 bits;  conditional E-value: 0.071
   TIGR01617   7 pncttckkarrwLeangieyeeidlkedtitreelke 43 
                 p c  +k  ++ L+ +++++e  d+  d+  r+ lk+
  MMETSP1137-20121227|8844_1 510 PRCGFSKTIVEILQGEKVSFETFDILTDEDVRQGLKT 546
                 789*********************9999887777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (590 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       129  (0.0314481); expected 82.0 (0.02)
Passed bias filter:                       97  (0.023647); expected 82.0 (0.02)
Passed Vit filter:                        23  (0.00560702); expected 4.1 (0.001)
Passed Fwd filter:                        12  (0.0029254); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.40u 0.14s 00:00:00.54 Elapsed: 00:00:01.22
# Mc/sec: 638.31
//
Query:       MMETSP1137-20121227|8845_1  [L=390]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (390 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       117  (0.0285227); expected 82.0 (0.02)
Passed bias filter:                      104  (0.0253535); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.14s 00:00:00.45 Elapsed: 00:00:00.44
# Mc/sec: 1169.90
//
Query:       MMETSP1137-20121227|8846_1  [L=288]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.8e-08   30.0   3.7     0.0023   14.6   0.5    3.0  3  TIGR01932 hflC: HflC protein


Domain annotation for each model (and alignments):
>> TIGR01932  hflC: HflC protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.0   0.0   5.7e-05      0.23      49     142 ..      65     156 ..      25     159 .. 0.75
   2 !    9.7   0.2   1.8e-05     0.073     169     224 ..     152     207 ..     142     213 .. 0.86
   3 !   14.6   0.5   5.7e-07    0.0023     244     285 ..     205     249 ..     198     270 .. 0.77

  Alignments for each domain:
  == domain 1    score: 8.0 bits;  conditional E-value: 5.7e-05
   TIGR01932  49 eaGLhvkiPliesvkildakiqtvDgeadrivtkekkdlivdtyikWri.eDf.kkyYlatgggnisaAevlikrkiedrlRseigklelkeivrs 142
                   G h++iP +++ +i+d +i    +   +  tk+ + ++++  +  r  eDf +  +  +g   + + e  + ++ +++l++++++++ ++++++
  MMETSP1137-20121227|8846_1  65 GEGTHFRIPWLQTPHIFDVRIRPR-NIGSNTGTKDLQVVTINLRVLSRPeEDFlHEIFSNLG---LDYDERVLPSIGNEVLKAVVAQYNAEQLITQ 156
                 5699*****************764.5666789999999999988877752566245666666...7777788888888888888888888888875 PP

  == domain 2    score: 9.7 bits;  conditional E-value: 1.8e-05
   TIGR01932 169 eiekgreilkkeilqiaesdlkdlGievvDvrikkiklsdelsesiynRmrsErea 224
                 +   +re + k++ ++ +   k++ i++ Dv i  +k+ +e++++i ++ ++E++a
  MMETSP1137-20121227|8846_1 152 QLITQRERVSKQVRDALTARAKEFHIQLEDVAITDLKFGKEFTAAIESKQVAEQDA 207
                 44567889999999999********************************9999864 PP

  == domain 3    score: 14.6 bits;  conditional E-value: 5.7e-07
   TIGR01932 244 aekEvvkiL...seAereariikgegdaeaAklysdayskdpeFy 285
                  + E+ ++L   +e e++a+ii++eg+ eaA+l s+a +++p   
  MMETSP1137-20121227|8846_1 205 QDAERSRLLvlkTEQEKKAAIIRAEGESEAARLVSEALENSPALV 249
                 45555555533468899*********************9999765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (288 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       207  (0.0504632); expected 82.0 (0.02)
Passed bias filter:                      108  (0.0263286); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.27u 0.13s 00:00:00.40 Elapsed: 00:00:00.69
# Mc/sec: 550.91
//
Query:       MMETSP1137-20121227|8847_1  [L=370]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (370 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       106  (0.0258411); expected 82.0 (0.02)
Passed bias filter:                       98  (0.0238908); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.15s 00:00:00.42 Elapsed: 00:00:00.56
# Mc/sec: 872.07
//
Query:       MMETSP1137-20121227|8848_1  [L=536]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   3.4e-276  914.8   9.2   3.9e-276  914.6   6.4    1.0  1  TIGR02343 chap_CCT_epsi: T-complex protein 1, epsilon subunit
   5.5e-152  505.0  10.5   6.2e-152  504.8   7.3    1.0  1  TIGR02339 thermosome_arch: thermosome, various subunits, archaeal
   4.5e-132  439.0   8.4     6e-132  438.6   5.8    1.0  1  TIGR02342 chap_CCT_delta: T-complex protein 1, delta subunit
   2.6e-110  367.2   9.2   3.1e-110  367.0   6.4    1.0  1  TIGR02344 chap_CCT_gamma: T-complex protein 1, gamma subunit
     3e-104  347.0   6.8     4e-104  346.6   4.7    1.0  1  TIGR02345 chap_CCT_eta: T-complex protein 1, eta subunit
   5.1e-101  336.8   8.1   6.8e-101  336.4   5.6    1.0  1  TIGR02340 chap_CCT_alpha: T-complex protein 1, alpha subunit
    3.5e-96  320.6   6.1    4.4e-96  320.2   4.2    1.0  1  TIGR02346 chap_CCT_theta: T-complex protein 1, theta subunit
    4.8e-94  313.6   9.5    5.8e-94  313.4   6.6    1.0  1  TIGR02341 chap_CCT_beta: T-complex protein 1, beta subunit
    1.5e-90  302.1   6.2    1.8e-90  301.8   4.3    1.0  1  TIGR02347 chap_CCT_zeta: T-complex protein 1, zeta subunit
    2.2e-22   77.1  13.0    3.4e-18   63.2   2.6    2.6  3  TIGR02348 GroEL: chaperonin GroL


Domain annotation for each model (and alignments):
>> TIGR02343  chap_CCT_epsi: T-complex protein 1, epsilon subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  914.6   6.4  9.4e-279  3.9e-276       2     531 ..       3     532 ..       2     533 .. 1.00

  Alignments for each domain:
  == domain 1    score: 914.6 bits;  conditional E-value: 9.4e-279
   TIGR02343   2 lafdelGrpfiiikdqdkkkrlkGleakksniaaakavasilrtslGpkGldkiliskdgditvtndGatilekmdldeeiakllvelsksqdeeiGdGttgvvvlasalleqaeklldkGihpikiaeGfekaakvavekleeiaeeisvdednketllkaaktslgskivskskrrlaeiavdavlavadlerkdvdfdlikvegkvGgsledtklikGilidkdlshpqmkkevkdakiailtcpfeppkpktkhkldissveeykklekyekekfeemiddikksGanlvicqwGfddeanhlllqndlpavrwvgGkeleliaiatgGrivprfeelseeklGkaklvreksfGttkdrllvieqskeskavtilvrGgnkliieeakrslhdalcvvrnlikdsrivyGGGaaeiacslaveeeadklsgveqyairafaealeeiplalaensGldpietlsevkakqlkeknpalGvdcleeGtndmkelkvletligkkqqillatqlvkmilkiddvisd 531
                 lafde+Grpfiiik+  kk rl+Gl a+k+ni+aakav +il+tslGpkG+dk+l+s+dgd+++tndGatile+m+++++i kllvelsksqd+eiGdGttgvvvla+alle+ae+lld+Gihp++iaeGf++a++vave+l ei++ ++ + + ke+l+  a+t+l+skiv++s+r +ae+avdavl+vad++r+dv++dlik++gkvGg+ledtkl++Gi+idkd+shpqm+k++ daki +ltcpfeppkpktkhkl++++v+ y +++  eke+f +mi ++k +Ganlv+cqwGfddeanhll+qndlpa+rwvgG+eleliaia + rivprf+els eklG+a+ v+e+ fGttkdr+ vie++ +s+avt++vrGgnk+i++eakrslhda+cvvrnli+dsrivyGGGaaeiac+l v++eadk+ ++eqya+rafa+ale+ p alaensGl+ iet+++vk+ q  e +p+lG+dcl++Gtndmke++v+etligk+qq++latq+v+milkiddvi++
  MMETSP1137-20121227|8848_1   3 LAFDEYGRPFIIIKEGAKKGRLQGLAAQKANIMAAKAVCNILKTSLGPKGMDKMLQSPDGDVCITNDGATILEQMKVENQIGKLLVELSKSQDDEIGDGTTGVVVLAGALLEKAEALLDRGIHPMRIAEGFDRACEVAVERLAEISDTFEHSLESKEALIGVAMTTLSSKIVNRSHRPMAEVAVDAVLSVADMKRRDVNLDLIKMDGKVGGRLEDTKLVRGIVIDKDMSHPQMRKDITDAKICVLTCPFEPPKPKTKHKLELETVQAYTDMQAAEKEYFLDMIRKVKACGANLVVCQWGFDDEANHLLMQNDLPAIRWVGGVELELIAIACNARIVPRFSELSPEKLGTAGHVHEEAFGTTKDRMTVIEDCPNSRAVTVFVRGGNKMIVDEAKRSLHDAICVVRNLIRDSRIVYGGGAAEIACALKVSDEADKVGTIEQYAMRAFADALEQTPCALAENSGLNSIETVAAVKSAQAAEGKPFLGIDCLQKGTNDMKEQRVFETLIGKQQQLMLATQVVRMILKIDDVIQP 532
                 89*********************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************986 PP

>> TIGR02339  thermosome_arch: thermosome, various subunits, archaeal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  504.8   7.3  1.5e-154  6.2e-152       1     519 [.      11     531 ..      11     533 .. 0.97

  Alignments for each domain:
  == domain 1    score: 504.8 bits;  conditional E-value: 1.5e-154
   TIGR02339   1 pvlilkegtq..rtkgrdalksniaaakavaeavkstlGPrGlDkmLvdslGdvtitnDGatilkemdiehPaakllvevaktqdeevgDGtttavvlaGeLlekaedLleqdihPtviveGyrkaaekalevideiaekid..vedkellkkvaetsltskavaeeakdklaelvveavkqvvekredgkykvdldnikiekkkGgsiedtelveGivvDkevvhegmPkrvenakialldaplevekteidaklkitspdqlkkfldqeeallkemvdkiadaGanvvicqkgiDdlaqhylakkGilavrrvkksDieklaratGakivsslkeieesdLGeaelveerkvg..edklvfvegaknakavtillrGgtehvvdeleRaleDalkvvksvledgkvvaGgGavevelakrlreyaakieGreqlaveafadaleeiprilaenaGldpidalvelRakhekegnknagvdvftgeiedmlelgvieplkvkeqaiksateaatlilriDdvia 519
                 p +i+keg++  r +g  a+k ni+aakav +++k++lGP+G+DkmL  + Gdv itnDGatil++m +e+   kllve +k+qd+e+gDGtt +vvlaG+Llekae+Ll+++ihP  i+eG+ +a e a+e + ei+++ +  +e ke l  va+t+l+sk v +++++ +ae++v+av +v++++   + +v+ld ik++ k Gg++edt+lv+Giv+Dk++ h++m k +++aki +l  p+e  k++++ kl++++++  + +  +e++++ +m+ k+++ Gan+v+cq g Dd a+h+l ++ + a+r v   ++e +a a+ a+iv  ++e+++++LG+a+ v+e+ +g  +d+++ +e++ n++avt+++rGg++++vde+ R+l+Da+ vv+++++d+++v GgGa e++ a+++ ++a+k++  eq a++afadale+ p +laen+Gl++i+++  ++++ + eg+   g+d  +   +dm e++v+e+l  k+q +  at +  +il+iDdvi 
  MMETSP1137-20121227|8848_1  11 PFIIIKEGAKkgRLQGLAAQKANIMAAKAVCNILKTSLGPKGMDKMLQSPDGDVCITNDGATILEQMKVENQIGKLLVELSKSQDDEIGDGTTGVVVLAGALLEKAEALLDRGIHPMRIAEGFDRACEVAVERLAEISDTFEhsLESKEALIGVAMTTLSSKIV-NRSHRPMAEVAVDAVLSVADMK---RRDVNLDLIKMDGKVGGRLEDTKLVRGIVIDKDMSHPQMRKDITDAKICVLTCPFEPPKPKTKHKLELETVQAYTDMQAAEKEYFLDMIRKVKACGANLVVCQWGFDDEANHLLMQNDLPAIRWVGGVELELIAIACNARIVPRFSELSPEKLGTAGHVHEEAFGttKDRMTVIEDCPNSRAVTVFVRGGNKMIVDEAKRSLHDAICVVRNLIRDSRIVYGGGAAEIACALKVSDEADKVGTIEQYAMRAFADALEQTPCALAENSGLNSIETVAAVKSAQAAEGKPFLGIDCLQKGTNDMKEQRVFETLIGKQQQLMLATQVVRMILKIDDVIQ 531
                 6799***98744679**************************************************************************************************************************9987511679*****************.8999****************98...567**************************************************************************************************************************************************************998633789*******************************************************************************************************************************************************************96 PP

>> TIGR02342  chap_CCT_delta: T-complex protein 1, delta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  438.6   5.8  1.5e-134    6e-132      11     514 ..      30     530 ..      21     532 .. 0.95

  Alignments for each domain:
  == domain 1    score: 438.6 bits;  conditional E-value: 1.5e-134
   TIGR02342  11 rtsnivaakavadairtslGpkGmdkliqekkGeviitndGatilkqlevlhpaakllvelskaqdieaGdGttsvvvlaGalldaaekllekgihptiisesfqsaadealkilkelsipvdls..drealiksattslsskvvsqyssllaplavdavlkvidsekdknvdlkdikvvkklGgtiddtelieGvvltqkasksaggptriekakigliqfqlsapktdmenqvvvsdyaqmdrvlkeerkyilnlvkkikkaganvlliqksilrdavndlalhflakkkilvvkdiereevefisktlGckpvasidkltadklGkaelveevks..ddskivkitGvknagktvsvlvrGsnklvideaerslhdalcvirslvkkraliaGGGapeieialklskkarelkGvesyivrafadalevipytlaenaGlnpikvvtelrnrh.aqGektaGisvrkggitdileeevlqpllvtksavtlasetvrsilkiddiv 514
                 +++ni+aakav ++++tslGpkGmdk++q+  G+v itndGatil+q++v   + kllvelsk+qd e GdGtt vvvlaGall+ ae+ll++gihp+ i+e+f +a++ a++ l e+s +++ s   +eali +a+t+lssk+v +  + +a +avdavl+v d  k ++v+l  ik+  k+Gg ++dt+l++G+v+++ +s+     + i +aki+++   + +pk++++ ++ ++  ++   ++  e++y l++++k+k++gan+++ q        +d a h+l + ++  ++ +   e+e+i+ +  ++ v    +l+++klG+a  v e      + ++  i  + n +++v+v vrG nk+++dea+rslhda+cv+r l+++  ++ GGGa ei  alk+s++a+++  +e+y +rafadale  p +laen+Gln+i++v+ ++++  a+G+   Gi+  + g++d++e++v   l+ ++  + la+++vr+ilkidd++
  MMETSP1137-20121227|8848_1  30 QKANIMAAKAVCNILKTSLGPKGMDKMLQSPDGDVCITNDGATILEQMKVENQIGKLLVELSKSQDDEIGDGTTGVVVLAGALLEKAEALLDRGIHPMRIAEGFDRACEVAVERLAEISDTFEHSleSKEALIGVAMTTLSSKIVNRSHRPMAEVAVDAVLSVADM-KRRDVNLDLIKMDGKVGGRLEDTKLVRGIVIDKDMSH-PQMRKDITDAKICVLTCPFEPPKPKTKHKLELETVQAYTDMQAAEKEYFLDMIRKVKACGANLVVCQWG-----FDDEANHLLMQNDLPAIRWVGGVELELIAIACNARIVPRFSELSPEKLGTAGHVHEEAFgtTKDRMTVIEDCPN-SRAVTVFVRGGNKMIVDEAKRSLHDAICVVRNLIRDSRIVYGGGAAEIACALKVSDEADKVGTIEQYAMRAFADALEQTPCALAENSGLNSIETVAAVKSAQaAEGKPFLGIDCLQKGTNDMKEQRVFETLIGKQQQLMLATQVVRMILKIDDVI 530
                 689*********************************************************************************************************************998765599************************************6.889******************************9997.566788************************9999999999999999******************99975.....689999*********************************************99976554226666666666665.789***********************************************************************************************9875268************************************************98 PP

>> TIGR02344  chap_CCT_gamma: T-complex protein 1, gamma subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  367.0   6.4  7.5e-113  3.1e-110       8     520 ..      20     530 ..      11     534 .. 0.95

  Alignments for each domain:
  == domain 1    score: 367.0 bits;  conditional E-value: 7.5e-113
   TIGR02344   8 ntkresGrkaqlsniqaakavadiirttlGpkamlkmlldplGgivltndGnailreidvahpaakslielsrtqdeevGdGttsviilaGellaaaepfleknihptvivraykkaledalkvleelsipvd..vedeakllklvkssigtkfvsrwsdlvvdlaldavktvkleerngrklevdikryakvekipGGeiedsavlkGvllnkdvthpkmrrkienprivlldcpleykkgesqtnveilkeedwnrllqleeeevkklceeiiavkpdlvitekGvsdlaqhyllkanisairrvrktdnnriarvsGativnrveelkesdvGtgaGlfevkkiG..deyftflteckdpkactillrGaskdvlnevernlqdalavarnvllepklvpGGGatelavsvklkkkakklegveqlpyeavadaleviprtlvqncGvnvirtltelrakhaqeekkalGidGetGkivdmkekgiweplavklqtiktaiesavlllriddiv 520
                 ++ r +G  aq +ni aakav++i++t+lGpk m kml  p G + +tndG +il +++v+    k l+els++qd+e+GdGtt v++laG ll++ae++l++ ihp  i +++ +a e a++ l e+s + +  +e++++l  +  +++++k+v+r    ++++a+dav  v+  +   r +++d+   +k++   GG++ed+++++G++++kd+ hp+mr+ i + +i +l cp+e  k +++ ++e++  + ++++   e+e+   + +++ a  ++lv+ + G  d a+h l+++++ air v   + + ia ++ a+iv r  el  + +Gt  G ++ + +G  ++ +t +++c + +a t+++rG+ k +++e +r l+da+ v+rn++ ++++v+GGGa+e+a + k++++a k+  +eq+ ++a adale  p  l++n+G n+i t++++++  a+e+k  lGid  +    dmke+ ++e+l  k+q +  a +   ++l+idd++
  MMETSP1137-20121227|8848_1  20 KKGRLQGLAAQKANIMAAKAVCNILKTSLGPKGMDKMLQSPDGDVCITNDGATILEQMKVENQIGKLLVELSKSQDDEIGDGTTGVVVLAGALLEKAEALLDRGIHPMRIAEGFDRACEVAVERLAEISDTFEhsLESKEALIGVAMTTLSSKIVNRSHRPMAEVAVDAVLSVADMK--RRDVNLDL---IKMDGKVGGRLEDTKLVRGIVIDKDMSHPQMRKDITDAKICVLTCPFEPPKPKTKHKLELETVQAYTDMQAAEKEYFLDMIRKVKACGANLVVCQWGFDDEANHLLMQNDLPAIRWVGGVELELIAIACNARIVPRFSELSPEKLGTA-GHVHEEAFGttKDRMTVIEDCPNSRAVTVFVRGGNKMIVDEAKRSLHDAICVVRNLIRDSRIVYGGGAAEIACALKVSDEADKVGTIEQYAMRAFADALEQTPCALAENSGLNSIETVAAVKSAQAAEGKPFLGIDCLQKGTNDMKEQRVFETLIGKQQQLMLATQVVRMILKIDDVI 530
                 456889**************************************************************************************************************************97664338999********************************998777..44445664...5666667*******************************************************************************************************************************************96.55556777733689***************************************************************************************************************************99999**********************************98 PP

>> TIGR02345  chap_CCT_eta: T-complex protein 1, eta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  346.6   4.7  9.6e-107    4e-104       4     519 ..      12     531 ..      10     534 .. 0.95

  Alignments for each domain:
  == domain 1    score: 346.6 bits;  conditional E-value: 9.6e-107
   TIGR02345   4 ivllkegtdt..sqGkgqlisninacvaiaeilkttlGPrGmdklivskek.avvsndGatilklldivhPaakllvdiaksqdsevGdGttsvvvlagellkeakplieeglhpqliiralrealklaieklkeiaveldeeksekrevleklaatalsskliaeekeffskmvvdavlsld...kddldkkliGvkkvkGGaledsvlvkGvafkktfsyaGfeqqPkkfanPkilllnvelelkaekdnaeirvedvedykeivdaewkiileklekivesGanvvlsklsiGdlatqyfadrdifcaGrvsdedlkrvvkatGasilsavsdleadvlGkcalfeekqiG..serynlftggekakactlilrGgaeqfleeaerslhdaimivrralkakkivaGGGaielelskllrekskkidgkqqliieavakaleviPrslaenaGfdsieilnklrkkhakkgekwaGvdieteeildaleafvwePllvkknalkaateaaatilsvdetik 519
                 ++++keg+ +   qG +   +ni a++a+ +ilkt lGP+Gmdk+++s +    ++ndGatil+++ +   ++kllv+++ksqd+e+GdGtt vvvlag ll++a  l++ g+hp  i +++ +a ++a+e+l ei+ + + ++ e +e l  +a+t+lssk++++++  ++++ vdavls+    + d++ +li +    GG led+ lv+G+  +k +s   + q  k +++ ki++l   +e    k+   + +e+v+ y ++  ae +  l+ ++k++++Gan+v+ +    d a   + ++d+ +   v   +l+ ++ a+ a+i+   s+l+ ++lG+ +   e+  G  ++r  + +++++++a+t+ +rGg + +++ea+rslhdai++vr  +++++iv GGGa e+  +  + +++ k+   +q  ++a+a+ale  P  laen G++sie+++ ++++ a +g+ + G+d  ++ + d+ e+ v+e l+ k+  l  at+  ++il++d+ i+
  MMETSP1137-20121227|8848_1  12 FIIIKEGAKKgrLQGLAAQKANIMAAKAVCNILKTSLGPKGMDKMLQSPDGdVCITNDGATILEQMKVENQIGKLLVELSKSQDDEIGDGTTGVVVLAGALLEKAEALLDRGIHPMRIAEGFDRACEVAVERLAEISDTFE-HSLESKEALIGVAMTTLSSKIVNRSHRPMAEVAVDAVLSVAdmkRRDVNLDLIKMDGKVGGRLEDTKLVRGIVIDKDMS---HPQMRKDITDAKICVLTCPFEPPKPKTKHKLELETVQAYTDMQAAEKEYFLDMIRKVKACGANLVVCQWGFDDEANHLLMQNDLPAIRWVGGVELELIAIACNARIVPRFSELSPEKLGTAGHVHEEAFGttKDRMTVIEDCPNSRAVTVFVRGGNKMIVDEAKRSLHDAICVVRNLIRDSRIVYGGGAAEIACALKVSDEADKVGTIEQYAMRAFADALEQTPCALAENSGLNSIETVAAVKSAQAAEGKPFLGIDCLQKGTNDMKEQRVFETLIGKQQQLMLATQVVRMILKIDDVIQ 531
                 67777776542258999999***************************9998799************************************************************************************999.667779******************************99875111455666688888889*****************998...6899*********************************************************************************9999********************************99999999933579*****************************************************************************************************************9************************************************997 PP

>> TIGR02340  chap_CCT_alpha: T-complex protein 1, alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  336.4   5.6  1.6e-103  6.8e-101       7     528 ..      23     531 ..      18     534 .. 0.95

  Alignments for each domain:
  == domain 1    score: 336.4 bits;  conditional E-value: 1.6e-103
   TIGR02340   7 rksGedvrkqnvlavvavanivktslGPvGldkmlvddvGdvtitndGatilkklevehPaakvlvelaqlqdkevGdGttsvvilaaellkradelvkrkvhPtsvisGyrlalkeavkyikeklavsveel.gkealinvaktslsskiislesdlfsnlvvdavlavkvtnekgetkyPikavnilkahGksaresllvkGyalnctvasqqmpkrvkkakialldfnlqkaklklgvqivvedpeklekirkreadivkerikkilkaGanvvlttkGiddlalkylveagvmavrrvkkedlkriakatGatlvssladleGeetleasllGeaeevveeria..ddelilikgtkkkksasiilrGandvlldemerslhdalcvvkrtleskkvvaGgGaveaalsiyleelattlgsreqlaiaefaealliiPkvlavnaakdstelvaklralhaaaqlkeekkklkflGldlsngkirdnveaGvlePavskvkslkfateaaitilriddlik 528
                 r +G  ++k n++a+ av ni+ktslGP G+dkml    Gdv itndGatil++++ve+  +k+lvel++ qd e+GdGtt vv+la +ll++a+ l++r +hP  + +G+  a++ av+ + e   +  ++l +keali va t+lsski++     +++++vdavl+v  ++++      ++ +++  + G+  +++ lv+G +++  ++  qm+k +++aki +l   ++  k k   ++ +e  +   +++  e +   + i+k+ ++Gan+v+   G dd a   l+++++ a+r v   +l  ia a  a++v  +++l+      + +lG+a +v ee ++   d + +i++  +++++++ +rG n++++de +rslhda+cvv+  +  +++v GgGa e+a ++++ + a  +g+ eq a+ +fa+al   P  la n++ +s e va +++ +aa+        + flG+d  +   +d +e  v+e  + k ++l  at+    il+idd+i+
  MMETSP1137-20121227|8848_1  23 RLQGLAAQKANIMAAKAVCNILKTSLGPKGMDKMLQSPDGDVCITNDGATILEQMKVENQIGKLLVELSKSQDDEIGDGTTGVVVLAGALLEKAEALLDRGIHPMRIAEGFDRACEVAVERLAEISDTFEHSLeSKEALIGVAMTTLSSKIVNRSHRPMAEVAVDAVLSVADMKRRDV---NLDLIKMDGKVGGRLEDTKLVRGIVIDKDMSHPQMRKDITDAKICVLTCPFEPPKPKTKHKLELETVQAYTDMQAAEKEYFLDMIRKVKACGANLVVCQWGFDDEANHLLMQNDLPAIRWVGGVELELIAIACNARIVPRFSELS------PEKLGTAGHVHEEAFGttKDRMTVIEDCPNSRAVTVFVRGGNKMIVDEAKRSLHDAICVVRNLIRDSRIVYGGGAAEIACALKVSDEADKVGTIEQYAMRAFADALEQTPCALAENSGLNSIETVAAVKSAQAAE-------GKPFLGIDCLQKGTNDMKEQRVFETLIGKQQQLMLATQVVRMILKIDDVIQ 531
                 56899999***************************************************************************************************************999987777666663689********************************988774443...456677777888899************************************99999999999*******************************************************************************9975......668**********98633799*********************************************************************************************************999877653.......4569*****9999************************************96 PP

>> TIGR02346  chap_CCT_theta: T-complex protein 1, theta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  320.2   4.2   1.1e-98   4.4e-96       6     517 ..      15     530 ..      13     534 .. 0.93

  Alignments for each domain:
  == domain 1    score: 320.2 bits;  conditional E-value: 1.1e-98
   TIGR02346   6 lkeGyrhlsgleeav.lknieaikelseitrtslGPngmnklvinhleklfvtnDaatilrelevqhPaakllvlaskaqeeelGDgtnlvlvlagelLekaeelirlGlspseiikGyelalkkalevLeelvvlevkdleekeelikalkaslsskqlgn.edilaelvakaiitvlPknsekfnvdnirvvkllGgslsdsevlkGlvlkreaeg.svk.rvkdakvavfscpldtattetkGtvLlknaeelldyskgeekkiealikeiadsgvkvivaggsvsdlalhyvekykilvlkisskfelrrlckvvgatalvrlsapspeelGlvdsvkveeigs..kkvtvikqeeedskistivLrGstknllddieraidDGvnvvkalvkdsrllpGagateieLakklkkyaeklkgleqyaikkfaeafeiiPrtlaenaGlnanevlskLyaahkkgnkslgidiekesdavkdvkeekiyDllaakkfaiklateaavtvLkvDqii 517
                 +keG+++ + +  a    ni a k +++i++tslGP+gm+k++      + +tnD atil++++v+  + kllv++sk q+ e+GDgt  v+vlag+lLekae l+  G++p+ i +G++ a++ a+e L e++ +  + le+ke li +  ++lssk +++ +  +ae+  +a+++v   + ++ n+d i++   +Gg l+d ++++G+v++++    +++    dak+ v++cp++  +  tk    l++ +   d + +e +   ++i++++  g++++v +    d a h + ++++  ++     el  ++ +++a  ++r+s  spe+lG+   v+ e  g+  +++tvi++  + s+  t+ +rG  k ++d+  r+++D + vv++l++dsr++ G+ga+ei  a k+ + a+k+ ++eqya++ fa a e  P +laen+Gln+ e ++++ +a+   + +  + i++ +++++d+ke++++++l +k+  + lat+ +  +Lk+D +i
  MMETSP1137-20121227|8848_1  15 IKEGAKKGRLQGLAAqKANIMAAKAVCNILKTSLGPKGMDKMLQSPDGDVCITNDGATILEQMKVENQIGKLLVELSKSQDDEIGDGTTGVVVLAGALLEKAEALLDRGIHPMRIAEGFDRACEVAVERLAEISDTFEHSLESKEALIGVAMTTLSSKIVNRsHRPMAEVAVDAVLSVADMKRRDVNLDLIKMDGKVGGRLEDTKLVRGIVIDKDMSHpQMRkDITDAKICVLTCPFEPPKPKTKHKLELETVQAYTDMQAAEKEYFLDMIRKVKACGANLVVCQWGFDDEANHLLMQNDLPAIRWVGGVELELIAIACNARIVPRFSELSPEKLGTAGHVHEEAFGTtkDRMTVIEDCPN-SRAVTVFVRGGNKMIVDEAKRSLHDAICVVRNLIRDSRIVYGGGAAEIACALKVSDEADKVGTIEQYAMRAFADALEQTPCALAENSGLNSIETVAAVKSAQAA-EGKPFLGIDCLQKGTNDMKEQRVFETLIGKQQQLMLATQVVRMILKIDDVI 530
                 6777765443333330459*********************************************************************************************************************99********************999857889***********************************************986524442679*******************************************************************************************************************99988852267999999877.9999**********************************************************************************************999844.3444455666777779*********************************98 PP

>> TIGR02341  chap_CCT_beta: T-complex protein 1, beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  313.4   6.6   1.4e-96   5.8e-94       2     513 ..      14     531 ..      13     534 .. 0.93

  Alignments for each domain:
  == domain 1    score: 313.4 bits;  conditional E-value: 1.4e-96
   TIGR02341   2 ilkdsaeeer..aenarlssfvgaiavgdlvkstlgpkgmdkillsasseasivvtndgatilksialdnpaakvlvdiskvqddevgdgttsvtvlaaellreaeklvnkkihpqtiiegyrlatkaalealkksavdnssdkvkfredllkiarttlsskilsqdkdhfaklavdavlrl....kgstnleaiqiikklggklddsyldegfllekkigvnqp.krienakiliantaldtdkvkvfgsrvrvdstaklaelekaekekmkekvekilkhninvfinrqliynypeqlfadagvmaiehadfegverlalvtggeivstfdepelvklgscdlieeilig..edkllkfsgvklgeactivlrgatqqildeaerslhdalavlsqtvkesrtvlgggcaellmakaveeeaqkvagkkalaveafakalrqlptiladnagfdsaelvaklraah.aegnstagldleegeiadlrklgivesyklkravvssaaeaaevllrvdniik 513
                 i+k++a++ r  + +a+ + ++ a av +++k++lgpkgmdk+l+s   ++++ +tndgatil ++ ++n   k+lv++sk qdde+gdgtt v+vla  ll +ae l+++ ihp  i eg+ +a ++a e l + + d  +++ + +e l+ +a ttlsski+ + +  +a++avdavl +    +   nl+ i++  k+gg+l+d+ l  g++++k +   q  k i +aki +   +++  k k    ++ ++++   +++++aeke + + + k+++ + n  + +    +  + l+ + ++ ai       +e +a+     iv  f e +  klg    + e   g  +d++  +  +    a t+ +rg  + i+dea+rslhda++v+ + +++sr+v+ggg+ae+  a  v++ea+kv   +  a+ afa al+q p  la+n+g++s e va +++a+ aeg+   g+d  +    d++++ + e++  k++ +  a++  +++l++d++i+
  MMETSP1137-20121227|8848_1  14 IIKEGAKKGRlqGLAAQKANIMAAKAVCNILKTSLGPKGMDKMLQSP--DGDVCITNDGATILEQMKVENQIGKLLVELSKSQDDEIGDGTTGVVVLAGALLEKAEALLDRGIHPMRIAEGFDRACEVAVERLAEIS-DTFEHSLESKEALIGVAMTTLSSKIVNRSHRPMAEVAVDAVLSVadmkRRDVNLDLIKMDGKVGGRLEDTKLVRGIVIDKDMSHPQMrKDITDAKICVLTCPFEPPKPKT-KHKLELETVQAYTDMQAAEKEYFLDMIRKVKACGANLVVCQWGFDDEANHLLMQNDLPAIRWVGGVELELIAIACNARIVPRFSELSPEKLGTAGHVHEEAFGttKDRMTVIEDCPNSRAVTVFVRGGNKMIVDEAKRSLHDAICVVRNLIRDSRIVYGGGAAEIACALKVSDEADKVGTIEQYAMRAFADALEQTPCALAENSGLNSIETVAAVKSAQaAEGKPFLGIDCLQKGTNDMKEQRVFETLIGKQQQLMLATQVVRMILKIDDVIQ 531
                 5666666666325578899999**********************986..569********************************************************************************98876.5555667899********************************8733323568******************************99876267*****************997.689************************************9999999*****************999999*************************99988888744699***********************************************************************************************************9875279********8777789**********************************97 PP

>> TIGR02347  chap_CCT_zeta: T-complex protein 1, zeta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  301.8   4.3   4.4e-93   1.8e-90      16     527 ..      28     534 ..      17     536 .] 0.94

  Alignments for each domain:
  == domain 1    score: 301.8 bits;  conditional E-value: 4.4e-93
   TIGR02347  16 aalkvnlnaakglqdvlktnlGPkGtlkmlvsgaGdikltkdGnvllkelqiqhPtasliaraaaaqdditGdGttstviligellkqaerlieeglhPrilteGleiakkealefleklkikkeeev.drelllevartslrtkleaeladklteivvdavlaikkdeee.idlfmveilemkhklevdtklirGlvldhGarhPdmkrkvknvyiltlnvsleyektevnsgfvyssaeereklveaerkfvddrvkkiielkkkvvekkadkgfvvinqkGidplsldllakegilalrrakrrnlerltlacGGealnsvedltpeslGyaGlvyetvig..eekytfieevknPksvtilikgpndhtlkqikdavrdGlravknaiedkcvvaGagafeiallkklkeekksvkGkaklgveafaeallviPkvlvensGydvqevlvkledea.dearevvgvdletgesivaelkgiwdnysvkkqllssatviasqlllvdevlraGk 527
                 aa k n+ aak++ ++lkt lGPkG  kml s  Gd+ +t dG ++l+++++ +   +l+   + +qdd +GdGtt +v+l+g+ll++ae l++ g+hP  ++eG++ a + a+e l ++    e+++  +e l+ va t+l  k+ ++    ++e+ vdavl++ + +++ ++l ++ +         dtkl+rG+v+d  + hP+m+++++++ i +l   +e  k     ++  ++++  +++ +ae+++  d ++k+     k ++ +     +v+ q G d  +  ll ++++ a+r +   +le + +ac  + +  + +l+pe+lG aG+v+e++ g  +++ t ie++ n ++vt++++g n+  ++  k +++d +  v+n i d  +v G ga eia++ k+ +e+ +v   ++ ++ afa+al + P  l+ensG++ +e+++++++++  e++  +g+d  +  + + +++ +++++  k+q+l  at +   +l +d+v++ G+
  MMETSP1137-20121227|8848_1  28 AAQKANIMAAKAVCNILKTSLGPKGMDKMLQSPDGDVCITNDGATILEQMKVENQIGKLLVELSKSQDDEIGDGTTGVVVLAGALLEKAEALLDRGIHPMRIAEGFDRACEVAVERLAEISDTFEHSLeSKEALIGVAMTTLSSKIVNRSHRPMAEVAVDAVLSVADMKRRdVNLDLIKMDGKVGGRLEDTKLVRGIVIDKDMSHPQMRKDITDAKICVLTCPFEPPKPKTKHKLELETVQAYTDMQAAEKEYFLDMIRKV-----KACGAN-----LVVCQWGFDDEANHLLMQNDLPAIRWVGGVELELIAIACNARIVPRFSELSPEKLGTAGHVHEEAFGttKDRMTVIEDCPNSRAVTVFVRGGNKMIVDEAKRSLHDAICVVRNLIRDSRIVYGGGAAEIACALKVSDEADKVGTIEQYAMRAFADALEQTPCALAENSGLNSIETVAAVKSAQaAEGKPFLGIDCLQKGTNDMKEQRVFETLIGKQQQLMLATQVVRMILKIDDVIQPGQ 534
                 67899******************************************************************************************************************987666655169**********************************986654499999987777777889*****************************************************************9999986.....778887.....8999*************************************************************9833578***********************************************************************************************************98651566799****7777799999********************************9886 PP

>> TIGR02348  GroEL: chaperonin GroL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.2   2.6   8.3e-21   3.4e-18      18     189 ..      37     206 ..      26     213 .. 0.86
   2 ?   -2.8   0.0      0.87   3.6e+02      34      65 ..     222     252 ..     219     253 .. 0.82
   3 !   19.0   0.8   2.2e-07   8.9e-05     387     520 ..     391     530 ..     376     534 .. 0.86

  Alignments for each domain:
  == domain 1    score: 63.2 bits;  conditional E-value: 8.3e-21
   TIGR02348  18 vdkladavkvtlGPkgrnvvleksfGaPkitkdGvtvakeieledkfenlGaklvkevasktndvaGdGtttatvlaqaivkeGlknvaaGanpielkrGiekavekvveelkklskevkdk....eeiaqvatisanndeeiGeliaeamekvgkdGvitveesksletelevve 189
                  +++ + +k+ lGPkg + +l+   G   it+dG t+  ++++e+++     kl+ e ++  +d  GdGtt  +vla a++++    +  G  p+++  G ++a+e +ve+l++ s   +++    e++  va    + +++i +   + m++v+ d v++v + k  + +l++++
  MMETSP1137-20121227|8848_1  37 AKAVCNILKTSLGPKGMDKMLQSPDGDVCITNDGATILEQMKVENQI----GKLLVELSKSQDDEIGDGTTGVVVLAGALLEKAEALLDRGIHPMRIAEGFDRACEVAVERLAEISDTFEHSleskEALIGVAMT--TLSSKIVNRSHRPMAEVAVDAVLSVADMKRRDVNLDLIK 206
                 5789999******************************9998887765....467778999999****************************************************98776652110444455443..4457899999999******************99999875 PP

  == domain 2    score: -2.8 bits;  conditional E-value: 0.87
   TIGR02348  34 rnvvleksfGaPkitkdGvtvakeieledkfe 65 
                 r +v++k++  P++ kd +t ak   l ++fe
  MMETSP1137-20121227|8848_1 222 RGIVIDKDMSHPQMRKD-ITDAKICVLTCPFE 252
                 789**********9999.67788777777776 PP

  == domain 3    score: 19.0 bits;  conditional E-value: 2.2e-07
   TIGR02348 387 lkekkarvedalnatraaveeG.ivaGGGvallraaeklee.lkeksedekvGveivkraleaPlrqiaenaGkdgavvvekvkekkdee....vGfnaatdeyedlveaGiidpakvtrsalqnaasiagllltteavv 520
                 + e k  + da+   r  + +  iv GGG+a + +a k+++ +++  + e+  ++    ale+    +aen+G ++   v++vk+++ +e    +G +  ++  +d+ e+ + +     ++ l  a+ +  ++l  + v+
  MMETSP1137-20121227|8848_1 391 VDEAKRSLHDAICVVRNLIRDSrIVYGGGAAEIACALKVSDeADKVGTIEQYAMRAFADALEQTPCALAENSGLNSIETVAAVKSAQAAEgkpfLGIDCLQKGTNDMKEQRVFETLIGKQQQLMLATQVVRMILKIDDVI 530
                 6788999***********987549**************9986777788999************999**********999999998765432333799*****************99999999999999999999877766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (536 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       219  (0.0533886); expected 82.0 (0.02)
Passed bias filter:                      120  (0.029254); expected 82.0 (0.02)
Passed Vit filter:                        20  (0.00487567); expected 4.1 (0.001)
Passed Fwd filter:                        10  (0.00243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.53u 0.21s 00:00:00.74 Elapsed: 00:00:00.75
# Mc/sec: 943.28
//
Query:       MMETSP1137-20121227|8850_1  [L=697]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.9e-07   26.4   0.0    7.4e-07   25.8   0.0    1.2  1  TIGR03788 marine_srt_targ: marine proteobacterial sortase target protein
    0.00079   15.8   0.5     0.0015   14.8   0.4    1.5  1  TIGR02442 Cob-chelat-sub: cobaltochelatase subunit


Domain annotation for each model (and alignments):
>> TIGR03788  marine_srt_targ: marine proteobacterial sortase target protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.8   0.0   3.6e-10   7.4e-07     275     428 ..     489     660 ..     469     673 .. 0.78

  Alignments for each domain:
  == domain 1    score: 25.8 bits;  conditional E-value: 3.6e-10
   TIGR03788 275 vfviDtsGsmages.ieqAksalllalsqLkpk.........DrfnvieFdsdvellfkkavpAtaenlerArqfvagLqAdGGtEmaeaLeaaledaaseesg.alrqvvFltDGavgnEeal......fklietklgdsRlftvgiGsaPn.syfmrkAAelGrGsftqi 428
                 + v D sGsmage  ++  k+a+l  l++L ++          ++n+i+F  + e+ +k++ p ++  ++    ++a+++ dG t    + e a + a+++ +g ++  ++F+tDGa +  +         k+ +++lgd  +  v+ Gs      f+++ A+  +G+f  +
  MMETSP1137-20121227|8850_1 489 LIVFDVSGSMAGEGrLRLFKDAVLHFLKNLIAQrmspylyklTHLNLIAFSTNCEAAHKSLQPVSPAVVAGLTGWLARIKPDGQTHSWLPFEMARDGAGTSDDGtTVDRILFITDGAPSEMHPXqrsldaAKAASAALGDCPIACVAYGSPVDvDGFLKELANETKGTFDRV 660
                 4589********9648999********999877333333333579***************************************************887777652799*********8875543000011344456778888888888886552468888888888888766 PP

>> TIGR02442  Cob-chelat-sub: cobaltochelatase subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.4   7.5e-07    0.0015     355     612 ..     368     635 ..     315     661 .. 0.51

  Alignments for each domain:
  == domain 1    score: 14.8 bits;  conditional E-value: 7.5e-07
   TIGR02442 355 eeeepgkddekeedekeeaeeeaesaeevalepagkifrvkllavska.rargasG...rrsktrs.dkrgryvkaernreeaddlavdAtlraaalrqkarrkavaveeedlrekvregragalvifvvDASgSMaarkrmkaakgavlsLLrdaYqkr........dkvaliaFrg..eeaevllpptssvela..kreLeelptggrtPLaagLkkaaevlknellkdkderplvvvitDGraNvaslgedpledartlaeklaaegiklvv 612
                 ++++ ++dde ++d++++a+    +a+  a+++   +++ +l     + +     G    r   +  ++ ++  + + ++++  +  +  tlr   +  ++      v ++++ +  + ++a   + +v D SgSMa ++r++  k avl++L++   +r         ++ liaF    e+a+  l+p s   +a     L++++  g+t      ++a + +    + d ++   ++ itDG     +  +  l++a++++++l +  i++v 
  MMETSP1137-20121227|8850_1 368 DDDDFESDDEYDPDAEAAADRARADAQAAAAAKGCAVVDSRLPNLVVHvDSGAVLGtpdVRALLLPgAEADALLELSLTQQDDYHGRLVHTLRVRLTLRRD----ALVDPAHVLFGKQLHKAXRPL-IVFDVSGSMAGEGRLRLFKDAVLHFLKNLIAQRmspylyklTHLNLIAFSTncEAAHKSLQPVSPAVVAglTGWLARIKPDGQTHSWLPFEMARDGAG--TSDDGTTVDRILFITDGAPSEMHPXQRSLDAAKAASAALGDCPIACVA 635
                 23344445555555555555555443333333333333333222111111111222111222222235566666666666565666666666666655555....467777777766666666654.578***********************986555522222222456777776422466666766665444411445777777777766666666666666..333344444456677776654455566666666666666665555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (697 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        90  (0.0219405); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.28s 00:00:00.70 Elapsed: 00:00:00.69
# Mc/sec: 1333.28
//
Query:       MMETSP1137-20121227|8851_1  [L=380]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (380 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        56  (0.0136519); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.18s 00:00:00.39 Elapsed: 00:00:00.40
# Mc/sec: 1253.90
//
Query:       MMETSP1137-20121227|8852_1  [L=131]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (131 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       112  (0.0273038); expected 82.0 (0.02)
Passed bias filter:                      108  (0.0263286); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.16s 00:00:00.32 Elapsed: 00:00:00.27
# Mc/sec: 640.39
//
Query:       MMETSP1137-20121227|8853_1  [L=163]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (163 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       165  (0.0402243); expected 82.0 (0.02)
Passed bias filter:                      109  (0.0265724); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.16s 00:00:00.34 Elapsed: 00:00:00.66
# Mc/sec: 325.97
//
Query:       MMETSP1137-20121227|8854_1  [L=261]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.4e-14   50.1   0.6    6.9e-14   49.7   0.0    1.4  2  TIGR01628 PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family
      2e-12   45.2   0.0    2.7e-12   44.7   0.0    1.2  1  TIGR01661 ELAV_HUD_SF: ELAV/HuD family splicing factor
    1.6e-09   35.1   0.1    2.7e-09   34.4   0.0    1.4  2  TIGR01622 SF-CC1: splicing factor, CC1-like family
    1.9e-08   31.1   0.0    2.5e-08   30.7   0.0    1.2  1  TIGR01642 U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor
    8.3e-05   20.2   0.0    0.00014   19.5   0.0    1.4  1  TIGR01659 sex-lethal: sex-lethal family splicing factor
     0.0038   13.8   0.0     0.0038   13.8   0.0    1.7  2  TIGR01645 half-pint: poly-U binding splicing factor, half-pint family
  ------ inclusion threshold ------
      0.013   12.1   0.0      0.013   12.1   0.0    1.5  2  TIGR01648 hnRNP-R-Q: hnRNP-R, Q splicing factor family


Domain annotation for each model (and alignments):
>> TIGR01628  PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.1       1.3   7.5e+02     493     493 ..      37      37 ..       7      92 .. 0.46
   2 !   49.7   0.0   1.2e-16   6.9e-14     288     379 ..     137     230 ..     130     260 .. 0.79

  Alignments for each domain:
  == domain 1    score: -3.3 bits;  conditional E-value: 1.3
   TIGR01628 493 p 493
                 +
  MMETSP1137-20121227|8854_1  37 S 37 
                 1 PP

  == domain 2    score: 49.7 bits;  conditional E-value: 1.2e-16
   TIGR01628 288 lYvkNlddtvddekLrelFeefGeitSakvmld.ekekSkgFGFVcfssqeeAnkAvtelhgkilngkPLyvalAqrkeqRkarLqqqfmq.as 379
                 ++v  l ++ +d  L + F+++ + + a+v+++ +++kS+g+GFV+f+++ + +kA++e+hgk ++++P+ v     ke  ++  ++++++   
  MMETSP1137-20121227|8854_1 137 IFVGDLGNETNDDVLGHAFSKYPSFQKARVVRNkQTQKSQGYGFVSFKDPWDMTKALREMHGKYIGNRPVKVRKSTWKERTLQDNEKEWTHaLA 230
                 68888999999*********************967789***********************************999999988888888855322 PP

>> TIGR01661  ELAV_HUD_SF: ELAV/HuD family splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.7   0.0   4.7e-15   2.7e-12     171     346 ..      30     212 ..       7     217 .. 0.68

  Alignments for each domain:
  == domain 1    score: 44.7 bits;  conditional E-value: 4.7e-15
   TIGR01661 171 Psssn.skallsdleavlnaqltrvprstil.taaaiaplhkaaakfrlsaldflavl.akrlqqhavaqqaa..aqrasplaadgavag.laagaqiaasdgagycifvynlspdtdeavl.qlfgpfGavqsvkiirdlttnkckGygfvsmtnydeaalailslnGytlgnrvlqvsfkt 346
                 P++++ + ++ s+++a ++a+l+r +++    +aa+ +  + +a+     a +  a+l   +  +++ ++++    ++++p  a+ + ag + +++++a  +   + ifv +l  +t++ vl   f+++ + q+ +++r+ +t+k +Gygfvs  +  + ++a++ + G  +gnr ++v   t
  MMETSP1137-20121227|8854_1  30 PAEETaTSSFTSKIDANVDAALMRLAQAHAEaEAAGVGRERLGASSSMAVADSRAATLgDAQPPRGPAPPRRPpqGKEKAPAVAKRICAGhVWEDKTLAEWPEDDFRIFVGDLGNETNDDVLgHAFSKYPSFQKARVVRNKQTQKSQGYGFVSFKDPWDMTKALREMHGKYIGNRPVKVRKST 212
                 444331345666677766666666555443213444444333333333333333333324444555555554311344556555655555144667788888999*****************999**************************************************99987655 PP

>> TIGR01622  SF-CC1: splicing factor, CC1-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   0.1       1.7     1e+03     326     355 ..      32      47 ..      17      82 .. 0.47
   2 !   34.4   0.0   4.6e-12   2.7e-09     219     298 ..     134     213 ..     121     251 .. 0.85

  Alignments for each domain:
  == domain 1    score: -3.8 bits;  conditional E-value: 1.7
   TIGR01622 326 nteereqldekldrddekgsgalaiagtds 355
                 + ++++ +  k+d               ++
  MMETSP1137-20121227|8854_1  32 EETATSSFTSKIDA--------------NV 47 
                 22222222222222..............22 PP

  == domain 2    score: 34.4 bits;  conditional E-value: 4.6e-12
   TIGR01622 219 dlkLYvGnlhfnitEqeLrqiFepFGeielvqlqkDpetGrskGyGFiqFsdaeeakeAleklNGlelAGReikvglasD 298
                 d +++vG+l  +  ++ L + F  + + ++ ++ ++++t +s+GyGF+ F+d     +Al ++ G  +  R++kv  +  
  MMETSP1137-20121227|8854_1 134 DFRIFVGDLGNETNDDVLGHAFSKYPSFQKARVVRNKQTQKSQGYGFVSFKDPWDMTKALREMHGKYIGNRPVKVRKSTW 213
                 689************************************************************************88433 PP

>> TIGR01642  U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.7   0.0   4.2e-11   2.5e-08     293     379 ..     131     217 ..     100     251 .. 0.86

  Alignments for each domain:
  == domain 1    score: 30.7 bits;  conditional E-value: 4.2e-11
   TIGR01642 293 ldsedklyignLPldlkddqvkeLLesFGdLkaFnliKdlatGlsKGyaFceykdssvtdlAiaaLnGiklgdkkLnvkrAtvgakq 379
                 ++++ ++++g+L ++ +dd +     ++   +   ++++ +t +s+Gy+F+ +kd+ +   A+  + G+ +g++ ++v++ t   + 
  MMETSP1137-20121227|8854_1 131 PEDDFRIFVGDLGNETNDDVLGHAFSKYPSFQKARVVRNKQTQKSQGYGFVSFKDPWDMTKALREMHGKYIGNRPVKVRKSTWKERT 217
                 67788******************99999999999**********************************************9976543 PP

>> TIGR01659  sex-lethal: sex-lethal family splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.0   2.3e-07   0.00014     115     185 ..     142     212 ..     124     250 .. 0.81

  Alignments for each domain:
  == domain 1    score: 19.5 bits;  conditional E-value: 2.3e-07
   TIGR01659 115 lpqdmtdrelyalfrtigpintcrimrdyktgysfgyafvdfaseadsqraikslngitvrnkrlkvsyar 185
                 l ++ +d  l   f      +  r++r+ +t  s gy+fv f    d  +a++++ g  + n+ +kv  + 
  MMETSP1137-20121227|8854_1 142 LGNETNDDVLGHAFSKYPSFQKARVVRNKQTQKSQGYGFVSFKDPWDMTKALREMHGKYIGNRPVKVRKST 212
                 55566666666667777777889999999999999999999999999999999999999999999997655 PP

>> TIGR01645  half-pint: poly-U binding splicing factor, half-pint family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -5.1   3.0       3.5     2e+03     294     350 ..      29      83 ..       9     105 .. 0.52
   2 !   13.8   0.0   6.5e-06    0.0038     108     180 ..     136     210 ..     134     232 .. 0.92

  Alignments for each domain:
  == domain 1    score: -5.1 bits;  conditional E-value: 3.5
   TIGR01645 294 Paaaavaaaaatakitaaeavagaavlglraqspatassslvtdieakavvssakke 350
                  +a   a+++ t+ki a+  +a    l+ +a++ a a++     ++a + ++ a + 
  MMETSP1137-20121227|8854_1  29 APAEETATSSFTSKIDANVDAAL-MRLA-QAHAEAEAAGVGRERLGASSSMAVADSR 83 
                 34444556666666655433222.1122.2333444444444445544444444444 PP

  == domain 2    score: 13.8 bits;  conditional E-value: 6.5e-06
   TIGR01645 108 rv.vGsisfelkedtlrrafdPfGPiksinmsWdpvtqkhkgfafve.evPeaallaleqmngallGGrnlkvgr 180
                 r+ vG +  e ++d+l +af+ +   +   +  +  tqk +g+ fv    P     al +m g+ +G r +kv +
  MMETSP1137-20121227|8854_1 136 RIfVGDLGNETNDDVLGHAFSKYPSFQKARVVRNKQTQKSQGYGFVSfKDPWDMTKALREMHGKYIGNRPVKVRK 210
                 777999999*************************************9999*9********************975 PP

>> TIGR01648  hnRNP-R-Q: hnRNP-R, Q splicing factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.6       1.1   6.4e+02     556     556 ..      37      37 ..       3      91 .. 0.47
   2 ?   12.1   0.0   2.2e-05     0.013     236     301 ..     137     208 ..     133     235 .. 0.82

  Alignments for each domain:
  == domain 1    score: -3.4 bits;  conditional E-value: 1.1
   TIGR01648 556 g 556
                 +
  MMETSP1137-20121227|8854_1  37 S 37 
                 1 PP

  == domain 2    score: 12.1 bits;  conditional E-value: 2.2e-05
   TIGR01648 236 lyvrnlmletteeiieksfse...fkpGavervk...kirdyafvhfedredavkamdelnGkeleGseiev 301
                 ++v +l  et ++++   fs+   f+   v r k   k + y fv f+d  d  ka+ e+ Gk +   ++ v
  MMETSP1137-20121227|8854_1 137 IFVGDLGNETNDDVLGHAFSKypsFQKARVVRNKqtqKSQGYGFVSFKDPWDMTKALREMHGKYIGNRPVKV 208
                 58889999999999999999722255566766663336678***********************99888877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (261 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       147  (0.0358362); expected 82.0 (0.02)
Passed bias filter:                      106  (0.0258411); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.29u 0.12s 00:00:00.41 Elapsed: 00:00:01.05
# Mc/sec: 328.09
//
Query:       MMETSP1137-20121227|8855_1  [L=58]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        90  (0.0219405); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.15s 00:00:00.27 Elapsed: 00:00:00.34
# Mc/sec: 225.16
//
Query:       MMETSP1137-20121227|8856_1  [L=66]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (66 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        41  (0.00999512); expected 82.0 (0.02)
Passed bias filter:                       40  (0.00975134); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.12s 00:00:00.24 Elapsed: 00:00:00.27
# Mc/sec: 322.64
//
Query:       MMETSP1137-20121227|8857_1  [L=481]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.5e-11   40.6   0.2    6.7e-09   33.1   0.3    2.3  2  TIGR01622 SF-CC1: splicing factor, CC1-like family
      5e-05   20.5   0.1    0.00053   17.1   0.0    1.9  2  TIGR01628 PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family
      0.006   13.2   0.0      0.026   11.1   0.0    1.9  2  TIGR01648 hnRNP-R-Q: hnRNP-R, Q splicing factor family


Domain annotation for each model (and alignments):
>> TIGR01622  SF-CC1: splicing factor, CC1-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.8   0.0    0.0018       2.4     153     198 ..     250     297 ..     208     318 .. 0.76
   2 !   33.1   0.3   4.9e-12   6.7e-09     397     480 ..     334     418 ..     300     426 .. 0.86

  Alignments for each domain:
  == domain 1    score: 4.8 bits;  conditional E-value: 0.0018
   TIGR01622 153 kDrnSrrSkGvaYvEFydvesvqlAlal.tGqkll.gvPvivqaseAE 198
                    + +r kG a + F++ esvqlA+ l  G  ++ g+P+ vq++  E
  MMETSP1137-20121227|8857_1 250 YTTEDGRPKGDALLSFMKPESVQLAVTLrDGHEIRpGRPLSVQPARFE 297
                 45567899******************994588886699***9998766 PP

  == domain 2    score: 33.1 bits;  conditional E-value: 4.9e-12
   TIGR01622 397 vpsevnlaseclvLsNmFdp..ateeeenfdkeikdDvkeEcskkggvvhiyvdkknsaGkvYlkfdsveaalaavkalngRyFag 480
                 +ps    as+ ++L+ +F +  ate + +f  ++k+Dv+ Ec k g+v ++ v + + +G   ++f++ e+a++ v ++  R F+ 
  MMETSP1137-20121227|8857_1 334 LPS-GVRASTVVILKGLFTAeeATEADADFYANLKQDVQVECAKAGEVDKVTVFEGSEHGAAAVRFKRQEDAQRCVSMMCERTFGS 418
                 454.446899********998899***********************************************************984 PP

>> TIGR01628  PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.0   3.9e-07   0.00053     275     367 ..     200     299 ..     182     346 .. 0.69
   2 ?    1.2   0.1     0.025        34     219     256 ..     391     428 ..     364     442 .. 0.59

  Alignments for each domain:
  == domain 1    score: 17.1 bits;  conditional E-value: 3.9e-07
   TIGR01628 275 lkqerkekaqgvNlYvkNlddtvddekLrelFeefG.......eitSakvmldekekSkgFGFVcfssqeeAnkAvtelhg.kilngkPLyvalAqrkeqR 367
                 +k++++  + g+N+Yv  + d+v+  +L e F+  G        +  +kv + e ++ kg    +f ++e  + Avt  +g +i  g+PL v  A+  e R
  MMETSP1137-20121227|8857_1 200 RKKKKFVSKGGSNVYVSGIPDGVEPLELAECFKVAGlfktevdGTIRMKVYTTEDGRPKGDALLSFMKPESVQLAVTLRDGhEIRPGRPLSVQPAR-FEVR 299
                 344445566789999999999999999999998887333211112347888899999999999999999999999999998555568999887663.3333 PP

  == domain 2    score: 1.2 bits;  conditional E-value: 0.025
   TIGR01628 219 rgfafvnyekaedAkkAveelngkkitlaatgkilyVg 256
                 +g a v ++++edA++ v  + ++ ++  +    ly g
  MMETSP1137-20121227|8857_1 391 HGAAAVRFKRQEDAQRCVSMMCERTFGSGKLACELYDG 428
                 23455666666666666666666666655555555544 PP

>> TIGR01648  hnRNP-R-Q: hnRNP-R, Q splicing factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.1   0.0   1.9e-05     0.026      58     132 ..     210     291 ..     205     299 .. 0.72
   2 ?   -0.9   0.0     0.083   1.1e+02      94     121 ..     386     413 ..     374     424 .. 0.81

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 1.9e-05
   TIGR01648  58 GcevfvGkiPrdlyedelvPlfekvGkiy.......elrlmmdldGknrGyafvtfcnkeeakeavkelnnyeirpGrllGv 132
                 G++v+v  iP  +   el   f  +G           +++    dG+ +G a++ f + e  + av   + +eirpGr l v
  MMETSP1137-20121227|8857_1 210 GSNVYVSGIPDGVEPLELAECFKVAGLFKtevdgtiRMKVYTTEDGRPKGDALLSFMKPESVQLAVTLRDGHEIRPGRPLSV 291
                 566666666666666666666655553321111100344445579*********************************9987 PP

  == domain 2    score: -0.9 bits;  conditional E-value: 0.083
   TIGR01648  94 ldGknrGyafvtfcnkeeakeavkelnn 121
                 ++G + G a v f  +e+a++ v  + +
  MMETSP1137-20121227|8857_1 386 FEGSEHGAAAVRFKRQEDAQRCVSMMCE 413
                 99*******************9987655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (481 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       108  (0.0263286); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.38u 0.15s 00:00:00.53 Elapsed: 00:00:00.57
# Mc/sec: 1094.60
//
Query:       MMETSP1137-20121227|8861_1  [L=310]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (310 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       147  (0.0358362); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.15s 00:00:00.38 Elapsed: 00:00:00.38
# Mc/sec: 1076.75
//
Query:       MMETSP1137-20121227|8862_1  [L=132]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (132 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       102  (0.0248659); expected 82.0 (0.02)
Passed bias filter:                       97  (0.023647); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.11s 00:00:00.28 Elapsed: 00:00:00.33
# Mc/sec: 527.96
//
Query:       MMETSP1137-20121227|8863_1  [L=350]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.2e-07   28.2   0.8    2.9e-07   27.8   0.5    1.2  1  TIGR00326 eubact_ribD: riboflavin biosynthesis protein RibD
    0.00021   19.1   0.4    0.00051   17.9   0.2    1.6  1  TIGR02571 ComEB: ComE operon protein 2


Domain annotation for each model (and alignments):
>> TIGR00326  eubact_ribD: riboflavin biosynthesis protein RibD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.8   0.5   1.4e-10   2.9e-07       1     100 [.     175     278 ..     175     343 .. 0.74

  Alignments for each domain:
  == domain 1    score: 27.8 bits;  conditional E-value: 1.4e-10
   TIGR00326   1 mkraldlakkaqftTepNPaVGaVivk.ngeivgegahek....aGeaHaEvvAlaqAgeka.......kgatlyVtLEPCsHqGrTpPCaealieaGikkvvvsmkDpnpl 100
                 m+ al++a+ a    +   +VG+V v+  + i+g+g+ +      G  HaE+ A+ q             +  lyVt+EPC        Ca+al +  i +vv + + +   
  MMETSP1137-20121227|8863_1 175 MRSALQEAEAALA--AQEVPVGCVFVHpVEGIIGRGHNNTvaecNGTRHAELEAIDQIILVDqrpasilAECVLYVTVEPCL------MCASALRQVCISHVVFGARNEKFG 278
                 7889999987754..45567*******99*******987622226888999999988653335567777999*********7......5*************9998876554 PP

>> TIGR02571  ComEB: ComE operon protein 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.2   2.5e-07   0.00051      62     115 ..     214     271 ..     194     278 .. 0.78

  Alignments for each domain:
  == domain 1    score: 17.9 bits;  conditional E-value: 2.5e-07
   TIGR02571  62 ghcvrtihaemnallqcakf....gvsteeaeiyvthfpclqctksiiqagikkvyya 115
                 + c  t hae++a+ q             e+ +yvt  pcl c+ ++ q  i +v + 
  MMETSP1137-20121227|8863_1 214 AECNGTRHAELEAIDQIILVdqrpASILAECVLYVTVEPCLMCASALRQVCISHVVFG 271
                 67999********9997644111133457889********************998774 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (350 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        68  (0.0165773); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.27u 0.16s 00:00:00.43 Elapsed: 00:00:00.32
# Mc/sec: 1443.63
//
Query:       MMETSP1137-20121227|8864_1  [L=235]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (235 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       146  (0.0355924); expected 82.0 (0.02)
Passed bias filter:                       96  (0.0234032); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.15s 00:00:00.37 Elapsed: 00:00:00.33
# Mc/sec: 939.92
//
Query:       MMETSP1137-20121227|8865_1  [L=279]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.8e-16   58.3   1.9    2.2e-16   58.0   1.3    1.1  1  TIGR02349 DnaJ_bact: chaperone protein DnaJ
    6.9e-11   39.1   0.2    1.1e-10   38.4   0.1    1.3  1  TIGR03835 termin_org_DnaJ: terminal organelle assembly protein TopJ


Domain annotation for each model (and alignments):
>> TIGR02349  DnaJ_bact: chaperone protein DnaJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.0   1.3   1.1e-19   2.2e-16       1      83 [.       5      89 ..       5     139 .. 0.75

  Alignments for each domain:
  == domain 1    score: 58.0 bits;  conditional E-value: 1.1e-19
   TIGR02349  1 dYYeiLgvskdAseeeikkAYrklakkyHPDrnkg.eke.aeekfkeineAyevLsdeekraqYDqfghagleggaggggagfeg 83
                dYY iLgvs dAs  +i+kAYrk +   HPDr kg +++ a   f + ++A+evLsd + ra++D + +a++ ++a+ +++++  
  MMETSP1137-20121227|8865_1  5 DYYAILGVSPDASVGDIQKAYRKCSLAVHPDRYKGnDPDfAVREFLQLTKAKEVLSDAKARAAFDAVVRARTMHKAKLEAQHAGR 89
                9*********************************9544447889**********************9999888765553333322 PP

>> TIGR03835  termin_org_DnaJ: terminal organelle assembly protein TopJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.4   0.1   5.5e-14   1.1e-10       3      64 ..       5      69 ..       3      72 .. 0.90

  Alignments for each domain:
  == domain 1    score: 38.4 bits;  conditional E-value: 5.5e-14
   TIGR03835  3 DyyevLgidrDadeqeikkafrkLakkyhPDrnka..ad.aakifaeineandvLsnPkkraryD 64
                Dyy +Lg+++Da   +i+ka+rk +   hPDr k   +d a + f  +  a++vLs+ k ra +D
  MMETSP1137-20121227|8865_1  5 DYYAILGVSPDASVGDIQKAYRKCSLAVHPDRYKGndPDfAVREFLQLTKAKEVLSDAKARAAFD 69
                9*******************************886336656788999***************999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (279 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       211  (0.0514383); expected 82.0 (0.02)
Passed bias filter:                      108  (0.0263286); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.26u 0.18s 00:00:00.44 Elapsed: 00:00:00.43
# Mc/sec: 856.39
//
Query:       MMETSP1137-20121227|8866_1  [L=118]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (118 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        51  (0.012433); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.15s 00:00:00.31 Elapsed: 00:00:00.72
# Mc/sec: 216.32
//
Query:       MMETSP1137-20121227|8867_1  [L=421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.5e-09   35.7   0.0    4.1e-06   24.4   0.0    2.1  2  TIGR02410 carnitine_TMLD: trimethyllysine dioxygenase
    1.3e-05   22.2   0.1     0.0027   14.6   0.0    2.2  2  TIGR02409 carnitine_bodg: gamma-butyrobetaine hydroxylase
     0.0014   15.6   0.0     0.0023   14.9   0.0    1.2  1  TIGR03946 viomycin_VioC: arginine beta-hydroxylase, Fe(II)/alpha-ketoglutarate-dependent


Domain annotation for each model (and alignments):
>> TIGR02410  carnitine_TMLD: trimethyllysine dioxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.1   0.0   0.00013      0.18     180     226 ..     196     241 ..     188     257 .. 0.84
   2 !   24.4   0.0     3e-09   4.1e-06     309     341 ..     381     413 ..     350     417 .. 0.89

  Alignments for each domain:
  == domain 1    score: 9.1 bits;  conditional E-value: 0.00013
   TIGR02410 180 ssHtDgtYfeetpGlqlFHlLkhdgtGGetvlvDvfkvaeklkkkap 226
                 ++H ++t  + t  l  F + k + tGGe  l D+ k+++++k+++ 
  MMETSP1137-20121227|8867_1 196 GMHNESTN-KRTNRLGAFVCFKAAETGGEFLLLDGQKMLKEIKQETL 241
                 66666664.56777889**************************9875 PP

  == domain 2    score: 24.4 bits;  conditional E-value: 3e-09
   TIGR02410 309 penevevklkpGevlifDnwRvlHaRtsFtGkR 341
                  +n v v +k G+v+++Dn+ v+H+R +FtG+R
  MMETSP1137-20121227|8867_1 381 MKNLVYVPMKEGDVVLVDNYQVMHGRAKFTGER 413
                 58999**************************99 PP

>> TIGR02409  carnitine_bodg: gamma-butyrobetaine hydroxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.3   0.0    0.0013       1.8     204     235 ..     211     242 ..     194     260 .. 0.84
   2 !   14.6   0.0   1.9e-06    0.0027     312     339 ..     383     410 ..     357     418 .. 0.87

  Alignments for each domain:
  == domain 1    score: 5.3 bits;  conditional E-value: 0.0013
   TIGR02409 204 lLhclestveGGdsllvDGFavaeaLrkekpe 235
                    c + +++GG+ ll+DG ++ +++++e  +
  MMETSP1137-20121227|8867_1 211 AFVCFKAAETGGEFLLLDGQKMLKEIKQETLQ 242
                 5679*****************99999988654 PP

  == domain 2    score: 14.6 bits;  conditional E-value: 1.9e-06
   TIGR02409 312 lkltfkleeGdlvlfdntRllHaRdafe 339
                 + +   ++eGd+vl+dn  ++H+R  f 
  MMETSP1137-20121227|8867_1 383 NLVYVPMKEGDVVLVDNYQVMHGRAKFT 410
                 4566789******************998 PP

>> TIGR03946  viomycin_VioC: arginine beta-hydroxylase, Fe(II)/alpha-ketoglutarate-dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   1.7e-06    0.0023     270     299 ..     378     410 ..     359     418 .. 0.78

  Alignments for each domain:
  == domain 1    score: 14.9 bits;  conditional E-value: 1.7e-06
   TIGR03946 270 daklrevv...ldqGdvafidnrravhGrrafr 299
                  a+++++v   +++Gdv+++dn++++hGr  f 
  MMETSP1137-20121227|8867_1 378 RATMKNLVyvpMKEGDVVLVDNYQVMHGRAKFT 410
                 36677766333789***************9996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (421 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       128  (0.0312043); expected 82.0 (0.02)
Passed bias filter:                      123  (0.0299854); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.32u 0.18s 00:00:00.50 Elapsed: 00:00:00.71
# Mc/sec: 782.64
//
Query:       MMETSP1137-20121227|8868_1  [L=121]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (121 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        41  (0.00999512); expected 82.0 (0.02)
Passed bias filter:                       36  (0.00877621); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.13s 00:00:00.27 Elapsed: 00:00:00.27
# Mc/sec: 591.51
//
Query:       MMETSP1137-20121227|8869_1  [L=168]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (168 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       220  (0.0536324); expected 82.0 (0.02)
Passed bias filter:                      142  (0.0346173); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.12s 00:00:00.30 Elapsed: 00:00:00.47
# Mc/sec: 471.79
//
Query:       MMETSP1137-20121227|8870_1  [L=170]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (170 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        66  (0.0160897); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.16s 00:00:00.31 Elapsed: 00:00:00.49
# Mc/sec: 457.92
//
Query:       MMETSP1137-20121227|8871_1  [L=85]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (85 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       119  (0.0290102); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.15s 00:00:00.27 Elapsed: 00:00:00.27
# Mc/sec: 415.52
//
Query:       MMETSP1137-20121227|8872_1  [L=78]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (78 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        64  (0.0156021); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.14s 00:00:00.27 Elapsed: 00:00:00.44
# Mc/sec: 233.98
//
Query:       MMETSP1137-20121227|8873_1  [L=105]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (105 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        74  (0.01804); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.12s 00:00:00.25 Elapsed: 00:00:00.38
# Mc/sec: 364.71
//
Query:       MMETSP1137-20121227|8874_1  [L=328]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (328 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        99  (0.0241346); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.16s 00:00:00.42 Elapsed: 00:00:00.35
# Mc/sec: 1236.93
//
Query:       MMETSP1137-20121227|8875_1  [L=122]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        4.6    5.7   9.9       0.27    9.6   1.9    2.2  2  TIGR02052 MerP: mercuric transport protein periplasmic component


Domain annotation for each model (and alignments):
>> TIGR02052  MerP: mercuric transport protein periplasmic component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.0   0.5     0.069   2.8e+02       1      20 [.      13      31 ..      13      39 .. 0.82
   2 ?    9.6   1.9   6.6e-05      0.27      16      41 ..      54      79 ..      44      91 .. 0.82

  Alignments for each domain:
  == domain 1    score: -0.0 bits;  conditional E-value: 0.069
   TIGR02052  1 mkklaallalaalvslpala 20
                m+ l+ ll l++l+++pa a
  MMETSP1137-20121227|8875_1 13 MQALL-LLLLVVLLAAPAAA 31
                66677.88899999999977 PP

  == domain 2    score: 9.6 bits;  conditional E-value: 6.6e-05
   TIGR02052 16 lpalaatktvtlevPgmtcaacPitv 41
                ++a aa   v l++Pg +caac  t 
  MMETSP1137-20121227|8875_1 54 VSAAAAMAVVGLHMPGCACAACSGTA 79
                456788899*************8775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (122 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       207  (0.0504632); expected 82.0 (0.02)
Passed bias filter:                      112  (0.0273038); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.18u 0.17s 00:00:00.35 Elapsed: 00:00:00.43
# Mc/sec: 374.48
//
Query:       MMETSP1137-20121227|8876_1  [L=425]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (425 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        64  (0.0156021); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.16s 00:00:00.61 Elapsed: 00:00:00.57
# Mc/sec: 967.16
//
Query:       MMETSP1137-20121227|8877_1  [L=110]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (110 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        65  (0.0158459); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.12s 00:00:00.26 Elapsed: 00:00:00.27
# Mc/sec: 537.73
//
Query:       MMETSP1137-20121227|8878_1  [L=951]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.2e-15   52.7   0.0    9.4e-15   52.1   0.0    1.2  1  TIGR03466 HpnA: hopanoid-associated sugar epimerase
    4.4e-14   50.7   0.3    1.3e-13   49.2   0.0    1.9  2  TIGR01755 flav_wrbA: NAD(P)H:quinone oxidoreductase, type IV
    5.4e-08   30.1   0.3    4.2e-07   27.1   0.2    2.0  1  TIGR04180 EDH_00030: NAD dependent epimerase/dehydratase, LLPSF_EDH_00030 family
    2.8e-05   21.7   0.1    7.1e-05   20.3   0.1    1.6  2  TIGR01777 yfcH: TIGR01777 family protein
    0.00025   18.2   0.3     0.0021   15.1   0.0    2.1  2  TIGR01746 Thioester-redct: thioester reductase domain
    0.00051   16.8   0.0     0.0016   15.2   0.0    1.8  1  TIGR01179 galE: UDP-glucose 4-epimerase
     0.0071   13.4   0.0      0.012   12.6   0.0    1.4  1  TIGR02197 heptose_epim: ADP-glyceromanno-heptose 6-epimerase
  ------ inclusion threshold ------
      0.014   12.3   0.0      0.025   11.5   0.0    1.4  1  TIGR01214 rmlD: dTDP-4-dehydrorhamnose reductase


Domain annotation for each model (and alignments):
>> TIGR03466  HpnA: hopanoid-associated sugar epimerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.1   0.0   1.8e-17   9.4e-15       1     158 [.       1     155 [.       1     174 [. 0.80

  Alignments for each domain:
  == domain 1    score: 52.1 bits;  conditional E-value: 1.8e-17
   TIGR03466   1 kkvlvtGatGFvGsavvrllleeGeevrvlvrktsdrrnleeldvEiveGdlkdeaslkkalkGcealfHvAAdyrlwakdpeelykanvegtravleaAleagvervvytssvatlgvkedgkeadettpsklekmi.G...hYkrskflAEqaveelaae 158
                 ++vl+ G+tG++G +++++l++eG +v  + r+ +    +e+l+v+i+  d   + s     +  ++ +H+A     w  + e+ +++n+ gtr+ ++aA + g +r+v +ssvat+g+++  ++   + p+k ++   G   +Y  sk+  Eq ++ +a +
  MMETSP1137-20121227|8878_1   1 MRVLISGTTGWIGGELAKKLVAEGSTVSGVGRRPTVIDGVESLQVDIMSNDSCKQIS----ERKYDVAVHLAGSLG-W-CTLEQAVDINIAGTRRFVQAAIDSGAKRIVVASSVATIGTQAPTHPPS-KLPMKPDHKFeGgpwSYAFSKYSVEQLIRYMASD 155
                 689******************************************999888654443....234677889998655.4.4556779********************************887766555.555555544324444799**********999864 PP

>> TIGR01755  flav_wrbA: NAD(P)H:quinone oxidoreductase, type IV
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.3       1.6   8.3e+02      20      49 ..     331     360 ..     321     371 .. 0.63
   2 !   49.2   0.0   2.6e-16   1.3e-13       2     143 ..     441     578 ..     440     593 .. 0.88

  Alignments for each domain:
  == domain 1    score: -2.4 bits;  conditional E-value: 1.6
   TIGR01755  20 avaeGareveGaevvvkrvpellpeevlek 49 
                 a+a+         vvvkrvp+   e+ l+ 
  MMETSP1137-20121227|8878_1 331 AAAAAPPMKPVNVVVVKRVPKESEEQWLRM 360
                 3333222233366899****9887776655 PP

  == domain 2    score: 49.2 bits;  conditional E-value: 2.6e-16
   TIGR01755   2 kvlvlyysayGhiermakavaeGareveGaevvvkrvpellpeevlekstkkldqeapvatreeladydaiivGtatryGnmasqmrafldqtG..GlwakgalvgkvgsvftssatqhGGqestilsfivtllhhGmiivgls 143
                 ++lvl+ s     ++ma+ vaeGar+ +  +v ++ vp   p++  +    +  + +p    + l  +d +  G++t  G ++ +m++f+d++   G+w   +l gk+g  f+s + + GG+e   +++   ++ +G +  g++
  MMETSP1137-20121227|8878_1 441 RILVLFDSNSTSTQQMAELVAEGARQLNHMDVRIRCVPG--PDNHWDCKDVRQ-AYIPANFGDVL-WADGVACGSPTNLGCISWRMKKFWDDMSqaGFW--SRLDGKIGCSFSSVGGEAGGAELVNMAMNSIMMNYGFACFGVT 578
                 799***********************************7..888888777776.78997776666.689**********************98622666..5699********************************9988875 PP

>> TIGR04180  EDH_00030: NAD dependent epimerase/dehydratase, LLPSF_EDH_00030 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.1   0.2   8.3e-10   4.2e-07       1     155 [.       3     148 ..       3     155 .. 0.80

  Alignments for each domain:
  == domain 1    score: 27.1 bits;  conditional E-value: 8.3e-10
   TIGR04180   1 vlvtGadGfiGshlvealvekGaevralvlynsfnswGwldevekevkkeievvlGdirdaesvkkav.kgvdvvfhlaaliaiPysyvapesyvetnvkGtlnvlqaardlevekvvhtstsevyGta......qyvPidekhplqaq.sPysaskigadql 155
                 vl++G+ G+iG  l+ +lv++G +v  + +             ++ v++ +e ++ di  ++s+k++  ++ dv +hla  ++    + + e+ v+ n+ Gt   +qaa d + +++v +s+  + Gt         +P++ +h+ ++    y+ sk + +ql
  MMETSP1137-20121227|8878_1   3 VLISGTTGWIGGELAKKLVAEGSTVSGVGR-------------RPTVIDGVESLQVDIMSNDSCKQISeRKYDVAVHLAGSLG----WCTLEQAVDINIAGTRRFVQAAIDSGAKRIVVASSVATIGTQapthppSKLPMKPDHKFEGGpWSYAFSKYSVEQL 148
                 799********************9987654.............345678888889999999999987626789999**99775....6788999*******************************99962222223577888888776414577777777776 PP

>> TIGR01777  yfcH: TIGR01777 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   0.1   1.4e-07   7.1e-05       1      67 [.       3      70 ..       3     115 .. 0.78
   2 ?   -3.4   0.0       2.3   1.2e+03     198     230 ..     220     254 ..     217     265 .. 0.80

  Alignments for each domain:
  == domain 1    score: 20.3 bits;  conditional E-value: 1.4e-07
   TIGR01777  1 vlitGgtGliGralveelekkghevviltrskekekeekkesakevaee..aeeealegvdavinLaGe 67
                vli+G tG iG +l+++l ++g++v+ + r+++     ++ ++ +++++   ++ + ++ d+ ++LaG+
  MMETSP1137-20121227|8878_1  3 VLISGTTGWIGGELAKKLVAEGSTVSGVGRRPTVIDGVESLQV-DIMSNdsCKQISERKYDVAVHLAGS 70
                79******************************96554443333.333332245558899*********6 PP

  == domain 2    score: -3.4 bits;  conditional E-value: 2.3
   TIGR01777 198 ihleDlvklilfaleneevsGv..vNataPepvrn 230
                 ++l+D+v+ +l a++ +  +Gv  v ++aP+    
  MMETSP1137-20121227|8878_1 220 VALSDQVSCLLSAVKAPLKEGVrtVACVAPKVYAS 254
                 67899**********99999985567889987655 PP

>> TIGR01746  Thioester-redct: thioester reductase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.1      0.11        58       2      23 ..       3      24 ..       2      31 .. 0.88
   2 !   15.1   0.0   4.2e-06    0.0021     110     199 ..      81     175 ..      52     281 .. 0.72

  Alignments for each domain:
  == domain 1    score: 0.6 bits;  conditional E-value: 0.11
   TIGR01746  2 vlLTGAtGfLGaylleeLlrrs 23
                vl+ G tG++G +l+++L+++ 
  MMETSP1137-20121227|8878_1  3 VLISGTTGWIGGELAKKLVAEG 24
                99****************9875 PP

  == domain 2    score: 15.1 bits;  conditional E-value: 4.2e-06
   TIGR01746 110 aaNVegtvevlrlaasgkakpliyvS...tlsvlaaielsakvevddatetkkpglatGYaqSKwvaEllvreasdr....glpvtivRpGrilgds 199
                   N++gt+  ++ a  + ak ++  S   t+ ++a+++++ k  +  +++ k  g    Ya SK+  E+l+r  ++     g++++ vR+G+ + d+
  MMETSP1137-20121227|8878_1  81 DINIAGTRRFVQAAIDSGAKRIVVASsvaTIGTQAPTHPPSK--LPMKPDHKFEGGPWSYAFSKYSVEQLIRYMASDpaykGIDFVLVRVGATVTDP 175
                 46*************999998776661115556666665553..333333334433447*************987777999**********988874 PP

>> TIGR01179  galE: UDP-glucose 4-epimerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0     3e-06    0.0016       1     161 [.       2     154 ..       2     170 .. 0.76

  Alignments for each domain:
  == domain 1    score: 15.2 bits;  conditional E-value: 3e-06
   TIGR01179   1 kiLvtGgaGyiGshvvrqllekgkevvvlDnlskgskealkalekitevklvegdladkekleavleeekidaviHfaaliavgEsvkePlkYYennvvntleLleamqkagvkkliFsssaavYge......sekvpisEespln.pinpYGrsklmvErilkdlkk 161
                 ++L++G++G+iG   +++l ++g  v  +        +++  +e       ++ d+  + + +++ +e+k d  +H+a++      ++   +  + n+ +t + ++a  + g k+++ +ss a+ g+      ++k+p++ +++ +     Y  sk  vE++++ +++
  MMETSP1137-20121227|8878_1   2 RVLISGTTGWIGGELAKKLVAEGSTVSGV----GRRPTVIDGVE------SLQVDIMSNDSCKQI-SERKYDVAVHLAGSLGWC-TLE---QAVDINIAGTRRFVQAAIDSGAKRIVVASSVATIGTqapthpPSKLPMKPDHKFEgGPWSYAFSKYSVEQLIRYMAS 154
                 59*********************998543....23445555555......678999999999887.67789999*****97543.233...34578***********************99999998222222356777777777655567999*******9987643 PP

>> TIGR02197  heptose_epim: ADP-glyceromanno-heptose 6-epimerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.6   0.0   2.4e-05     0.012       1     152 [.       3     151 ..       3     166 .. 0.70

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 2.4e-05
   TIGR02197   1 iivTGgaGfiGsnlvaalnekgetdilvvDklrkgekllnlkdeeiadyidkeellerlekeelkkveavfHegAisdTteldgellmenNyeyskellelcaekevk.liYASSAavYGdseeefreekelerPlN.......vYgySKllfDelvrke 152
                 +++ G+ G iG +l+++l  +g      v  + +   +++ ++   +d++++ + ++++++   +k ++ +H +      +l++   ++ N++ +++++++++++++k ++ ASS a+ G+++ +   +k  ++P          Y++SK  +++l+r  
  MMETSP1137-20121227|8878_1   3 VLISGTTGWIGGELAKKLVAEGS----TVSGVGRRPTVIDGVESLQVDIMSN-DSCKQISE---RKYDVAVHLAGSLGWCTLEQ--AVDINIAGTRRFVQAAIDSGAKrIVVASSVATIGTQAPTHPPSKLPMKPDHkfeggpwSYAFSKYSVEQLIR-Y 151
                 6899***************9994....4566666666666666555666655.55667776...58999999876555555554..5799**************98762678********87666555555555543111122279999999999987.3 PP

>> TIGR01214  rmlD: dTDP-4-dehydrorhamnose reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   4.9e-05     0.025       1      98 [.       2     104 ..       2     153 .. 0.88

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 4.9e-05
   TIGR01214   1 rilitGakgqlgreLveqlskegsevvaltrs..........qldledpealeellreikPdvvvntaAytdVDkaEseaekayavNalatenlAraaarvgallvhi 98 
                 r+li G++g +g eL+++l  egs+v  + r+          q+d+   ++ ++ + e k dv v+ a       +    e+a  +N  +t++  +aa + ga  + +
  MMETSP1137-20121227|8878_1   2 RVLISGTTGWIGGELAKKLVAEGSTVSGVGRRptvidgveslQVDIMSNDS-CKQISERKYDVAVHLAGSLG--WC--TLEQAVDINIAGTRRFVQAAIDSGAKRIVV 104
                 79****************************999*****************9.555666699*****997654..34..445788999999999999999999987765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (951 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       139  (0.0338859); expected 82.0 (0.02)
Passed bias filter:                      126  (0.0307167); expected 82.0 (0.02)
Passed Vit filter:                        25  (0.00609459); expected 4.1 (0.001)
Passed Fwd filter:                         8  (0.00195027); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.71u 0.15s 00:00:00.86 Elapsed: 00:00:00.94
# Mc/sec: 1335.34
//
Query:       MMETSP1137-20121227|8879_1  [L=546]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   7.1e-122  403.9   0.1   1.1e-121  403.4   0.1    1.2  1  TIGR02880 cbbX_cfxQ: CbbX protein
    3.5e-74  247.0   0.2    4.5e-74  246.6   0.1    1.1  1  TIGR02881 spore_V_K: stage V sporulation protein K
      1e-55  187.2   0.2    2.1e-55  186.2   0.1    1.3  1  TIGR03922 T7SS_EccA: type VII secretion AAA-ATPase EccA
     0.0011   16.4   0.1     0.0021   15.4   0.1    1.4  1  TIGR02640 gas_vesic_GvpN: gas vesicle protein GvpN
     0.0066   13.4   0.5      0.015   12.3   0.2    1.4  1  TIGR00750 lao: LAO/AO transport system ATPase
     0.0095   12.2   0.0      0.014   11.7   0.0    1.1  1  TIGR00763 lon: ATP-dependent protease La
  ------ inclusion threshold ------
      0.022   11.4   0.3       0.76    6.4   0.1    2.3  2  TIGR02928 TIGR02928: orc1/cdc6 family replication initiation protein
      0.053    9.9   0.0      0.069    9.5   0.0    1.2  1  TIGR01447 recD: exodeoxyribonuclease V, alpha subunit


Domain annotation for each model (and alignments):
>> TIGR02880  cbbX_cfxQ: CbbX protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  403.4   0.1  2.1e-124  1.1e-121       9     277 ..     123     396 ..     116     400 .. 0.96

  Alignments for each domain:
  == domain 1    score: 403.4 bits;  conditional E-value: 2.1e-124
   TIGR02880   9 eesgikevldeldreliglkpvktrireiaalllverlrqklglasaapslhmsftgnpgtgkttvalrmakilhrlgyvrkghlvsvtrddlvgqyightapktkevlkramggvlfideayylyrpdnerdygqeaieillqvmenqrddlvvilagykdrmdsffesnpglssrvahhvdfpdyseeellaiaellleeqqyrlsaeaeealaeyialrrkqpffanarsirnaldrarlrqanrllaa.....adkvldksdlvtieaed 277
                  ++g+ke l++ld +ligl pvk+r+reia+ll+v+++r klgl ++ pslhm ftg+pgtgkttvalrm +il r+gy r gh+v +trddlvgqy+ghtapktke++k+amgg+l++deayyly+  n+rdygqe+ieill+vmen+++dl+v+lagykd+md+f++  pg+ sr  +h++fp+y+e+el++i++++  e +y+l   aeeal+ y+++r++ pff+nar++rna+d ar+  a r++++     +d ++++++l+ti + d
  MMETSP1137-20121227|8879_1 123 FKEGVKEXLEKLDYDLIGLMPVKQRVREIASLLVVDKMRLKLGLETSVPSLHMGFTGAPGTGKTTVALRMGQILQRMGYCRTGHVVVATRDDLVGQYVGHTAPKTKEMVKKAMGGILLVDEAYYLYNAANDRDYGQESIEILLNVMENNKEDLIVVLAGYKDKMDRFYSFIPGMASRXGNHIEFPNYEEDELVEIGKVMCRELEYQLGPGAEEALKVYLSKRMRMPFFSNARTVRNAIDLARMSSAVRVFNEkmspySDGSVTEQELMTIMPAD 396
                 5789******************************************************************************************************************************************************************************************************************************************************983333346789999999999988 PP

>> TIGR02881  spore_V_K: stage V sporulation protein K
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  246.6   0.1   8.8e-77   4.5e-74       7     247 ..     137     376 ..     130     397 .. 0.92

  Alignments for each domain:
  == domain 1    score: 246.6 bits;  conditional E-value: 8.8e-77
   TIGR02881   7 klvGleevkelikeiyalilinekrkeeglkaekqvlhmifkGnPGtGkttvarllaklfkelnvlskGhlieveradlvGeyiGhtaqktrevikkalGGvlfideayslar.GGekdfGkeaidtlvkemedkreelvlilaGysdemdyflslnPGlksrfpisldfpdytveelleiakkmveereyklteeakaklreklakvksasekefsnarlvrnliekairrqavrllkksd 247
                  l+Gl  vk+ ++ei +l ++++ r + gl+++  +lhm f+G PGtGkttva  ++++++ ++    Gh++ + r dlvG+y+Ghta kt+e++kka+GG+l++deay l     ++d+G+e+i+ l++ me+++e+l+++laGy+d+md+f s+ PG+ sr   +++fp+y+ +el+ei k m  e ey+l   a+ +l+ +l k  +     fsnar+vrn i+ a    avr+++++ 
  MMETSP1137-20121227|8879_1 137 DLIGLMPVKQRVREIASLLVVDKMRLKLGLETSVPSLHMGFTGAPGTGKTTVALRMGQILQRMGYCRTGHVVVATRDDLVGQYVGHTAPKTKEMVKKAMGGILLVDEAYYLYNaANDRDYGQESIEILLNVMENNKEDLIVVLAGYKDKMDRFYSFIPGMASRXGNHIEFPNYEEDELVEIGKVMCRELEYQLGPGAEEALKVYLSKRMR--MPFFSNARTVRNAIDLARMSSAVRVFNEKM 376
                 58***********************************************************************************************************997615789***************************************************************************************99875..789**********************99763 PP

>> TIGR03922  T7SS_EccA: type VII secretion AAA-ATPase EccA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  186.2   0.1     4e-58   2.1e-55     277     544 ..     137     393 ..     125     408 .. 0.87

  Alignments for each domain:
  == domain 1    score: 186.2 bits;  conditional E-value: 4e-58
   TIGR03922 277 kqiGlervkeqvaalkssvevalvRaerGlavaqrskHlllaGPPGtGkttiArvvakiyaGlgvlrkpevrEvsRadligeyigeseaktnelidkaLggvlFlDEayaLvekrdgakddfGleaidtLLarlEndRdrlvviiAGYekdlDklLevneGLrsRFtrkieFesYspdElveiakrmaeerdsvlddaAaealleaatklaqestpdanGverrglDiagngrfvRnvvEraeeeRdfRldasdrldevtvddlkeit 544
                  +iGl  vk++v+ + s + v+ +R + Gl+  + s H+ + G PGtGktt+A  +++i+  +g  r  +v+   R dl+g+y+g++++kt+e++ ka+gg+l +DEay L +    +  d+G+e i+ LL  +En++++l+v+ AGY++++D++    +G++sR   +ieF+ Y  dElvei k+m +e +  l   A+eal+    k  +    ++  + r+++D a  +  vR   E+     d         ++vt+++l++i 
  MMETSP1137-20121227|8879_1 137 DLIGLMPVKQRVREIASLLVVDKMRLKLGLETSVPSLHMGFTGAPGTGKTTVALRMGQILQRMGYCRTGHVVVATRDDLVGQYVGHTAPKTKEMVKKAMGGILLVDEAYYLYNA--ANDRDYGQESIEILLNVMENNKEDLIVVLAGYKDKMDRFYSFIPGMASRXGNHIEFPNYEEDELVEIGKVMCRELEYQLGPGAEEALKVYLSKRMRMPFFSNARTVRNAIDLARMSSAVRVFNEKMSPYSD---------GSVTEQELMTIM 393
                 579*************************************************************************************************************99..77789********************************************************************************9987776666665555555555566655555555555555444443.........344444444444 PP

>> TIGR02640  gas_vesic_GvpN: gas vesicle protein GvpN
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.1   4.2e-06    0.0021      24      74 ..     175     226 ..     157     234 .. 0.84

  Alignments for each domain:
  == domain 1    score: 15.4 bits;  conditional E-value: 4.2e-06
   TIGR02640  24 vhlrGPaGtGktslalhvakkrdrPvvllnGdaelkt.sdlvGeeagyerkk 74 
                 + ++G  GtGkt++al + + ++r     +G   + t  dlvG++ g++  k
  MMETSP1137-20121227|8879_1 175 MGFTGAPGTGKTTVALRMGQILQRMGYCRTGHVVVATrDDLVGQYVGHTAPK 226
                 3489****************************99877258*****9998766 PP

>> TIGR00750  lao: LAO/AO transport system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.3   0.2   2.8e-05     0.015      35      63 ..     173     201 ..     166     211 .. 0.87

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 2.8e-05
   TIGR00750  35 hvvGltGvPGaGkstlveklieelrrrGl 63 
                   +G+tG PG Gk t+  ++++ l+r G+
  MMETSP1137-20121227|8879_1 173 LHMGFTGAPGTGKTTVALRMGQILQRMGY 201
                 568***********************997 PP

>> TIGR00763  lon: ATP-dependent protease La
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.7   0.0   2.7e-05     0.014     317     379 ..     127     198 ..     105     214 .. 0.79

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 2.7e-05
   TIGR00763 317 lkrakeiLdedHyglkkvKeRilEylavk.........klrkklkgkilclvGPPGVGKtSlaksiAkalnr 379
                 +k+  e Ld d  gl  vK+R+ E  +            l+ ++ +  + ++G PG GKt +a  + + l+r
  MMETSP1137-20121227|8879_1 127 VKEXLEKLDYDLIGLMPVKQRVREIASLLvvdkmrlklGLETSVPSLHMGFTGAPGTGKTTVALRMGQILQR 198
                 67778999*************99965544444554433334444455699*************999998887 PP

>> TIGR02928  TIGR02928: orc1/cdc6 family replication initiation protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   0.1    0.0015      0.76      45      72 ..     177     204 ..     160     213 .. 0.79
   2 ?    2.9   0.0     0.017         9     192     208 ..     301     317 ..     227     336 .. 0.83

  Alignments for each domain:
  == domain 1    score: 6.4 bits;  conditional E-value: 0.0015
   TIGR02928  45 iyGktGtGKtavtkkvlkeleeaaeekd 72 
                   G +GtGKt+v+  + + l++    + 
  MMETSP1137-20121227|8879_1 177 FTGAPGTGKTTVALRMGQILQRMGYCRT 204
                 679***************9998766554 PP

  == domain 2    score: 2.9 bits;  conditional E-value: 0.017
   TIGR02928 192 eeeivFppYdaeeLrdI 208
                  ++i+Fp+Y+++eL +I
  MMETSP1137-20121227|8879_1 301 GNHIEFPNYEEDELVEI 317
                 479***********998 PP

>> TIGR01447  recD: exodeoxyribonuclease V, alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   0.0   0.00014     0.069     168     188 ..     177     197 ..      76     210 .. 0.88

  Alignments for each domain:
  == domain 1    score: 9.5 bits;  conditional E-value: 0.00014
   TIGR01447 168 itGGPGTGKTttvarlllali 188
                  tG PGTGKTt++ r+ + l+
  MMETSP1137-20121227|8879_1 177 FTGAPGTGKTTVALRMGQILQ 197
                 59************9976666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (546 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       159  (0.0387616); expected 82.0 (0.02)
Passed bias filter:                      146  (0.0355924); expected 82.0 (0.02)
Passed Vit filter:                        30  (0.00731351); expected 4.1 (0.001)
Passed Fwd filter:                         8  (0.00195027); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.51u 0.13s 00:00:00.64 Elapsed: 00:00:00.65
# Mc/sec: 1108.71
//
Query:       MMETSP1137-20121227|8881_1  [L=383]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (383 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       130  (0.0316919); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.18s 00:00:00.49 Elapsed: 00:00:00.38
# Mc/sec: 1330.31
//
Query:       MMETSP1137-20121227|8882_1  [L=1061]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-47  154.9   0.2    1.2e-08   32.5   0.0   12.5 12  TIGR00756 PPR: pentatricopeptide repeat domain
    1.1e-06   25.7   0.2    0.00028   17.8   0.0    2.2  2  TIGR02037 degP_htrA_DO: peptidase Do
    0.00075   16.5   0.3       0.16    8.8   0.0    2.2  2  TIGR00225 prc: C-terminal processing peptidase


Domain annotation for each model (and alignments):
>> TIGR00756  PPR: pentatricopeptide repeat domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0      0.83   1.1e+03       7      19 ..     355     367 ..     355     369 .. 0.86
   2 ?    0.4   0.0      0.14   1.9e+02       4      34 ..     485     515 ..     485     516 .. 0.84
   3 !    5.3   0.0    0.0039       5.3       3      33 ..     519     549 ..     517     550 .. 0.95
   4 !    5.4   0.0    0.0035       4.7       2      34 ..     553     585 ..     552     586 .. 0.89
   5 !   28.0   0.0   2.3e-10   3.2e-07       1      35 []     587     621 ..     587     621 .. 0.97
   6 !   11.8   0.0   3.3e-05     0.046       1      34 [.     622     655 ..     622     656 .. 0.91
   7 !   12.1   0.0   2.6e-05     0.035       2      35 .]     658     691 ..     657     691 .. 0.95
   8 !   10.8   0.0     7e-05     0.095       2      34 ..     693     725 ..     692     726 .. 0.95
   9 !   32.5   0.0   8.7e-12   1.2e-08       2      34 ..     728     760 ..     727     761 .. 0.97
  10 !    7.2   0.0   0.00097       1.3       1      29 [.     762     790 ..     762     793 .. 0.93
  11 ?    3.6   0.2     0.014        19       2      34 ..     798     835 ..     797     836 .. 0.58
  12 !   18.5   0.0   2.3e-07   0.00032       1      34 [.     837     870 ..     837     871 .. 0.97

  Alignments for each domain:
  == domain 1    score: -2.0 bits;  conditional E-value: 0.83
   TIGR00756   7 isglckagrveeA 19 
                 +sgl++ +++ ++
  MMETSP1137-20121227|8882_1 355 VSGLGRKRQFQKM 367
                 589*******998 PP

  == domain 2    score: 0.4 bits;  conditional E-value: 0.14
   TIGR00756   4 ntlisglckagrveeAlelfdeMkergivPd 34 
                 n ++s+  + + ++ A+++f++ +++++  +
  MMETSP1137-20121227|8882_1 485 NLFMSAAIRCRVPSLAVSMFEQACAADVTAN 515
                 6678999999999********9998887665 PP

  == domain 3    score: 5.3 bits;  conditional E-value: 0.0039
   TIGR00756   3 yntlisglckagrveeAlelfdeMkergivP 33 
                 y+tl++++   gr  eA  ++ +M ++g+ P
  MMETSP1137-20121227|8882_1 519 YTTLVKAHHACGRSLEAYAVLTRMAAEGVAP 549
                 9***************************988 PP

  == domain 4    score: 5.4 bits;  conditional E-value: 0.0035
   TIGR00756   2 tyntlisglckagrveeAlelfdeMkergivPd 34 
                 t ntl+s  +k+g+   +l +f+  +e    Pd
  MMETSP1137-20121227|8882_1 553 TLNTLMSVAAKQGDRPRMLHFFKMVEETSEGPD 585
                 88********************99998887777 PP

  == domain 5    score: 28.0 bits;  conditional E-value: 2.3e-10
   TIGR00756   1 vtyntlisglckagrveeAlelfdeMkergivPda 35 
                 v++n+l++ +++++++++A +++++M++rg  P+a
  MMETSP1137-20121227|8882_1 587 VSWNVLLDYCARQKELHKATDVLRRMRARGTQPNA 621
                 79*******************************96 PP

  == domain 6    score: 11.8 bits;  conditional E-value: 3.3e-05
   TIGR00756   1 vtyntlisglckagrveeAlelfdeMkergivPd 34 
                 v+y +l+++++ a++++eA+ l d  +++g + d
  MMETSP1137-20121227|8882_1 622 VSYASLVRAYVGANELDEARGLVDAAMADGAKLD 655
                 79*********************99999987776 PP

  == domain 7    score: 12.1 bits;  conditional E-value: 2.6e-05
   TIGR00756   2 tyntlisglckagrveeAlelfdeMkergivPda 35 
                 + ntl+ g++k+ r +eA++ ++  + +g++Pda
  MMETSP1137-20121227|8882_1 658 VLNTLLGGYAKRLRHHEAFSALQAFENAGVRPDA 691
                 67******************************96 PP

  == domain 8    score: 10.8 bits;  conditional E-value: 7e-05
   TIGR00756   2 tyntlisglckagrveeAlelfdeMkergivPd 34 
                 +y+ l+s++ +a+ +  A+  f++M+e+g++P+
  MMETSP1137-20121227|8882_1 693 SYSLLLSACMRARAPGPAKAAFRKMREAGVRPT 725
                 79******************************8 PP

  == domain 9    score: 32.5 bits;  conditional E-value: 8.7e-12
   TIGR00756   2 tyntlisglckagrveeAlelfdeMkergivPd 34 
                 ty++l+s+l+ ag+++e+++++++M+++g++P+
  MMETSP1137-20121227|8882_1 728 TYSMLLSALAAAGDLDECERVLRQMQSDGVEPN 760
                 9*******************************9 PP

  == domain 10    score: 7.2 bits;  conditional E-value: 0.00097
   TIGR00756   1 vtyntlisglckagrveeAlelfdeMker 29 
                 ++y +l+++   a ++e Al +f++M+e+
  MMETSP1137-20121227|8882_1 762 YVYASLMKSSLIAAQPETALAIFEQMEEQ 790
                 68999*********************985 PP

  == domain 11    score: 3.6 bits;  conditional E-value: 0.014
   TIGR00756   2 tyntlisglcka....grveeAlelfdeM.kergivPd 34 
                 ty+ l+++lc +     +++ A+ ++d+M  ++++ P+
  MMETSP1137-20121227|8882_1 798 TYTLLVRALCAQphldMHLRRAWNVLDRMaDDADCAPN 835
                 66666666664322213456788888888555588887 PP

  == domain 12    score: 18.5 bits;  conditional E-value: 2.3e-07
   TIGR00756   1 vtyntlisglckagrveeAlelfdeMkergivPd 34 
                 vt+n+l++g+      ++A+ l+++M+ +g++P+
  MMETSP1137-20121227|8882_1 837 VTFNALLDGCLGVDAHDDAVALLRRMLNAGVSPN 870
                 7********************************9 PP

>> TIGR02037  degP_htrA_DO: peptidase Do
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.0     2e-07   0.00028     256     287 ..     126     157 ..     113     201 .. 0.67
   2 !    5.7   0.0   0.00095       1.3     261     286 ..     233     259 ..     221     326 .. 0.87

  Alignments for each domain:
  == domain 1    score: 17.8 bits;  conditional E-value: 2e-07
   TIGR02037 256 ekakGalvaevlkgspAekaGlkaGDvilkvn 287
                 ++ +G++v+ v+++s Ae+aG+++GDv+++  
  MMETSP1137-20121227|8882_1 126 QEGRGVVVSMVYPSSNAEQAGVREGDVVVATS 157
                 4569************************9865 PP

  == domain 2    score: 5.7 bits;  conditional E-value: 0.00095
   TIGR02037 261 alvaevlkgspAekaGl.kaGDvilkv 286
                 + va+v +g+ A+k+Gl + GDvil+ 
  MMETSP1137-20121227|8882_1 233 VEVAQVSEGGTAAKSGLvRPGDVILAT 259
                 5699************7589****975 PP

>> TIGR00225  prc: C-terminal processing peptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.8   0.0   0.00012      0.16      54     122 ..     120     193 ..     114     209 .. 0.77
   2 !    5.6   0.0    0.0011       1.5      53      89 ..     217     259 ..     201     281 .. 0.81

  Alignments for each domain:
  == domain 1    score: 8.8 bits;  conditional E-value: 0.00012
   TIGR00225  54 Giqvqmeddeivivspl.egsPAekagikpgDkIikvdgk....svagmelddavelirGkkgtkvkleierag 122
                 G+q  +++++ v+vs++   s Ae+ag++ gD +++   +      +  +l  + ++ir + + +v+l+++r++
  MMETSP1137-20121227|8882_1 120 GMQFVEQEGRGVVVSMVyPSSNAEQAGVREGDVVVATSASigdmMWDKTSLAGVQSAIRTRVDGQVRLRLLREE 193
                 7776666665555555427899************97555444327788999*******************9986 PP

  == domain 2    score: 5.6 bits;  conditional E-value: 0.0011
   TIGR00225  53 iGiqvqmedd.....eivivsplegsPAekag.ikpgDkIikv 89 
                 +Gi + + ++      +++ ++ eg+ A+k+g ++pgD I++ 
  MMETSP1137-20121227|8882_1 217 LGIVLREAKGgpsgrVVEVAQVSEGGTAAKSGlVRPGDVILAT 259
                 78888888888888889999************99******975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1061 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       168  (0.0409556); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.70u 0.14s 00:00:00.84 Elapsed: 00:00:00.62
# Mc/sec: 2258.72
//
Query:       MMETSP1137-20121227|8883_1  [L=535]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (535 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       117  (0.0285227); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.13s 00:00:00.47 Elapsed: 00:00:00.48
# Mc/sec: 1471.13
//
Query:       MMETSP1137-20121227|8884_1  [L=449]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (449 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       121  (0.0294978); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.17s 00:00:00.47 Elapsed: 00:00:00.57
# Mc/sec: 1021.78
//
Query:       MMETSP1137-20121227|8885_1  [L=225]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (225 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        47  (0.0114578); expected 82.0 (0.02)
Passed bias filter:                       44  (0.0107265); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.14s 00:00:00.34 Elapsed: 00:00:00.50
# Mc/sec: 593.95
//
Query:       MMETSP1137-20121227|8886_1  [L=523]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (523 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       211  (0.0514383); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.14s 00:00:00.51 Elapsed: 00:00:00.52
# Mc/sec: 1327.51
//
Query:       MMETSP1137-20121227|8887_1  [L=148]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (148 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       120  (0.029254); expected 82.0 (0.02)
Passed bias filter:                       98  (0.0238908); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.13s 00:00:00.29 Elapsed: 00:00:00.31
# Mc/sec: 630.14
//
Query:       MMETSP1137-20121227|8888_1  [L=65]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (65 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        51  (0.012433); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.15s 00:00:00.29 Elapsed: 00:00:00.35
# Mc/sec: 245.12
//
Query:       MMETSP1137-20121227|8889_1  [L=42]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (42 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        50  (0.0121892); expected 82.0 (0.02)
Passed bias filter:                       38  (0.00926377); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.12s 00:00:00.22 Elapsed: 00:00:00.23
# Mc/sec: 241.02
//
Query:       MMETSP1137-20121227|8890_1  [L=246]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (246 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       303  (0.0738664); expected 82.0 (0.02)
Passed bias filter:                      159  (0.0387616); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.17s 00:00:00.42 Elapsed: 00:00:00.41
# Mc/sec: 791.93
//
Query:       MMETSP1137-20121227|8891_1  [L=209]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (209 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        66  (0.0160897); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.13s 00:00:00.32 Elapsed: 00:00:00.32
# Mc/sec: 862.05
//
Query:       MMETSP1137-20121227|8892_1  [L=397]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.6e-05   21.8   0.2    2.5e-05   21.2   0.1    1.2  1  TIGR03466 HpnA: hopanoid-associated sugar epimerase
    3.3e-05   20.9   0.1    4.9e-05   20.4   0.0    1.2  1  TIGR04180 EDH_00030: NAD dependent epimerase/dehydratase, LLPSF_EDH_00030 family
    9.7e-05   19.1   0.0    0.00015   18.6   0.0    1.3  1  TIGR01179 galE: UDP-glucose 4-epimerase
    0.00021   18.7   0.0    0.00036   17.9   0.0    1.5  1  TIGR03649 ergot_EASG: ergot alkaloid biosynthesis protein, AFUA_2G17970 family
    0.00026   17.8   0.1    0.00037   17.2   0.0    1.1  1  TIGR02823 oxido_YhdH: putative quinone oxidoreductase, YhdH/YhfP family
    0.00036   18.0   0.0    0.00062   17.3   0.0    1.3  1  TIGR01777 yfcH: TIGR01777 family protein
    0.00089   14.5   0.0     0.0012   14.1   0.0    1.1  1  TIGR03443 alpha_am_amid: L-aminoadipate-semialdehyde dehydrogenase
     0.0064   13.4   0.0      0.021   11.7   0.0    1.8  2  TIGR01181 dTDP_gluc_dehyt: dTDP-glucose 4,6-dehydratase
      0.008   13.3   0.0      0.012   12.7   0.0    1.2  1  TIGR01746 Thioester-redct: thioester reductase domain


Domain annotation for each model (and alignments):
>> TIGR03466  HpnA: hopanoid-associated sugar epimerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.1   5.4e-08   2.5e-05       2      61 ..      77     144 ..      76     158 .. 0.79

  Alignments for each domain:
  == domain 1    score: 21.2 bits;  conditional E-value: 5.4e-08
   TIGR03466   2 kvlvtGatGFvGsavvrllleeGeevrvlvrkts......drrnlee..ldvEiveGdlkdeaslkka 61 
                 kvlv G tG++G  v+++l ++G++v +++r+ +      +++++e+    + +v+Gd+ d++slk++
  MMETSP1137-20121227|8892_1  77 KVLVLGCTGYIGRFVTKELINRGYDVTAFTRERAgvggkkSKEDIERdfSGAKVVVGDVCDAESLKRN 144
                 79****************************997622222234455432246899**********9986 PP

>> TIGR04180  EDH_00030: NAD dependent epimerase/dehydratase, LLPSF_EDH_00030 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   0.0   1.1e-07   4.9e-05       1      67 [.      78     144 ..      78     161 .. 0.77

  Alignments for each domain:
  == domain 1    score: 20.4 bits;  conditional E-value: 1.1e-07
   TIGR04180   1 vlvtGadGfiGshlvealvekGaevralvlyns.fnswGwldevekevkkeievvlGdirdaesvkka 67 
                 vlv G+ G+iG  ++ +l+++G++v+a+++  + ++ +   +++e++  +  +vv+Gd+ daes+k+ 
  MMETSP1137-20121227|8892_1  78 VLVLGCTGYIGRFVTKELINRGYDVTAFTRERAgVGGKKSKEDIERDF-SGAKVVVGDVCDAESLKRN 144
                 89**************************98654144444555555444.45689********999875 PP

>> TIGR01179  galE: UDP-glucose 4-epimerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.0   3.2e-07   0.00015       1      76 [.      77     155 ..      77     168 .. 0.80

  Alignments for each domain:
  == domain 1    score: 18.6 bits;  conditional E-value: 3.2e-07
   TIGR01179   1 kiLvtGgaGyiGshvvrqllekgkevvvlDn..lskgskealkalekit.evklvegdladkekleavleeekidaviH 76 
                 k+Lv G +GyiG  v+++l ++g++v  +       g k++ +++e+     k+v gd+ d+e+l++    +kid v+ 
  MMETSP1137-20121227|8892_1  77 KVLVLGCTGYIGRFVTKELINRGYDVTAFTRerAGVGGKKSKEDIERDFsGAKVVVGDVCDAESLKRNGFGDKIDVVVS 155
                 69***********************9887651144455555566555444999************99988888988875 PP

>> TIGR03649  ergot_EASG: ergot alkaloid biosynthesis protein, AFUA_2G17970 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.0   7.9e-07   0.00036      87     199 ..     175     291 ..      77     318 .. 0.75

  Alignments for each domain:
  == domain 1    score: 17.9 bits;  conditional E-value: 7.9e-07
   TIGR03649  87 likFidvavkkgvkrfvllsasaiekG....gpalgkvhaylkeleeveyavLRptWfmenfeeelhveaikeenklysAtsdg...kiPfvsaeDiArvAvkaLtdksaknteylvlGp 199
                  +k +d  +++g +++vllsa  ++k     + a  k+ + ++ +++v+y+++Rpt   + +  +  v+ +k ++k y   +dg   k   +s  D+A+v +  + +k+ +n+   v Gp
  MMETSP1137-20121227|8892_1 175 SKKALDALIEQGGSHYVLLSAICVQKPllefQRAKLKLEQEIEAQDSVSYSIIRPTAXFKSLAGQ--VQLVK-DGKPYIMFGDGqlsKANAISEPDLAAVIADGISKKEMHNKIIPVGGP 291
                 56789999****************998442233344566777777***********988887665..55555.577788888872225678*****************999998888777 PP

>> TIGR02823  oxido_YhdH: putative quinone oxidoreductase, YhdH/YhfP family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.0   8.2e-07   0.00037     137     220 ..      66     153 ..      59     161 .. 0.81

  Alignments for each domain:
  == domain 1    score: 17.2 bits;  conditional E-value: 8.2e-07
   TIGR02823 137 lekagltpeegevlVtGAtGgVgslavalLsklGyevvavt.......gkkeeeeylkelGakevisreeleeekkkplekerwagavDtv 220
                 l  + ++pe+ +vlV G tG +g + ++ L ++Gy+v+a t       gkk++e++ +++  ++v+  +  ++    +l+++ +   +D+v
  MMETSP1137-20121227|8892_1  66 LDVTTAKPEDVKVLVLGCTGYIGRFVTKELINRGYDVTAFTreragvgGKKSKEDIERDFSGAKVVVGDVCDA---ESLKRNGFGDKIDVV 153
                 5566789*******************************98755555558899999999997777777766665...488888888888887 PP

>> TIGR01777  yfcH: TIGR01777 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.0   1.4e-06   0.00062       1      39 [.      78     116 ..      78     136 .. 0.83

  Alignments for each domain:
  == domain 1    score: 17.3 bits;  conditional E-value: 1.4e-06
   TIGR01777   1 vlitGgtGliGralveelekkghevviltrskekekeek 39 
                 vl+ G tG iGr +++el ++g++v+++tr++     +k
  MMETSP1137-20121227|8892_1  78 VLVLGCTGYIGRFVTKELINRGYDVTAFTRERAGVGGKK 116
                 7899**************************987554444 PP

>> TIGR03443  alpha_am_amid: L-aminoadipate-semialdehyde dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.0   2.6e-06    0.0012     966    1068 ..      69     184 ..      53     193 .. 0.70

  Alignments for each domain:
  == domain 1    score: 14.1 bits;  conditional E-value: 2.6e-06
   TIGR03443  966 elaaeeevtvfltGatGflGsfilrdlltrr..kssslkvvahvrakseeagler........lrkagkaygiWdeewvskievvlGdlskekfGlsee...kwkklaeevdviih 1068
                  ++a+ e+v+v++ G+tG++G f+ ++l++r    +  ++  a v  k++++ +er        + + + a  +  + + +ki+vv+  l++   G++++   ++    + +d++i 
  MMETSP1137-20121227|8892_1   69 TTAKPEDVKVLVLGCTGYIGRFVTKELINRGydVTAFTRERAGVGGKKSKEDIERdfsgakvvVGDVCDAESLKRNGFGDKIDVVVSCLASRTGGIQDSwdiDYGASKKALDALIE 184 
                  5567789**********************993222334445666667888888875444444445677788888888888999999999999988887522234455555566555 PP

>> TIGR01181  dTDP_gluc_dehyt: dTDP-glucose 4,6-dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.7   0.0   4.6e-05     0.021       1      80 [.      77     156 ..      77     162 .. 0.87
   2 ?   -2.0   0.0      0.68   3.1e+02     197     268 ..     241     315 ..     234     317 .. 0.65

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 4.6e-05
   TIGR01181   1 klLvtGGaGfiGsnfvryileetpdaevvvlDkLtyagnkenlkdledeerysfvkgdiadrelverllkeedvdavvnf 80 
                 k+Lv G +G+iG  +++ ++++  d++    ++   +g+k++    +d +  ++v gd++d+e ++r     ++d+vv  
  MMETSP1137-20121227|8892_1  77 KVLVLGCTGYIGRFVTKELINRGYDVTAFTRERAGVGGKKSKEDIERDFSGAKVVVGDVCDAESLKRNGFGDKIDVVVSC 156
                 689*******************999999999999999988876666677899**************99888899999865 PP

  == domain 2    score: -2.0 bits;  conditional E-value: 0.68
   TIGR01181 197 tnalagkklpvyGdGqqvrDwlyveDhcrai..elvlekgrvgevyniggeee.rtnlevvkiilelldkdedli 268
                 + ++ gk+  ++GdGq  +     e    a+  + + +k  + ++  +gg  e  t le  ki+ el+dk+ ++i
  MMETSP1137-20121227|8892_1 241 QLVKDGKPYIMFGDGQLSKANAISEPDLAAViaDGISKKEMHNKIIPVGGPGEpLTPLEQSKILFELFDKEPKYI 315
                 557789999999999987776666655555412346666666777777775542566777777777777766665 PP

>> TIGR01746  Thioester-redct: thioester reductase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.7   0.0   2.5e-05     0.012       1      35 [.      77     109 ..      77     120 .. 0.90

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 2.5e-05
   TIGR01746   1 tvlLTGAtGfLGaylleeLlrrsteakviClVRak 35 
                 +vl++G tG++G++  +eL++r    +v+++ R++
  MMETSP1137-20121227|8892_1  77 KVLVLGCTGYIGRFVTKELINRG--YDVTAFTRER 109
                 69********************7..7899999976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (397 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       130  (0.0316919); expected 82.0 (0.02)
Passed bias filter:                      122  (0.0297416); expected 82.0 (0.02)
Passed Vit filter:                        28  (0.00682594); expected 4.1 (0.001)
Passed Fwd filter:                         9  (0.00219405); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.38u 0.16s 00:00:00.54 Elapsed: 00:00:00.43
# Mc/sec: 1218.60
//
Query:       MMETSP1137-20121227|8893_1  [L=389]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (389 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        96  (0.0234032); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.16s 00:00:00.43 Elapsed: 00:00:00.48
# Mc/sec: 1069.66
//
Query:       MMETSP1137-20121227|8894_1  [L=357]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (357 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        57  (0.0138957); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.13s 00:00:00.39 Elapsed: 00:00:00.39
# Mc/sec: 1208.21
//
Query:       MMETSP1137-20121227|8895_1  [L=234]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (234 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        67  (0.0163335); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.14s 00:00:00.34 Elapsed: 00:00:00.35
# Mc/sec: 882.44
//
Query:       MMETSP1137-20121227|8896_1  [L=979]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.3e-27   92.0  26.9    9.3e-27   92.0  18.6    2.4  2  TIGR00816 tdt: C4-dicarboxylate transporter/malic acid transport protein
    2.6e-20   70.3   0.0    4.3e-20   69.6   0.0    1.4  1  TIGR02180 GRX_euk: glutaredoxin
    6.5e-17   59.4   0.0    2.2e-16   57.7   0.0    1.9  2  TIGR02181 GRX_bact: glutaredoxin 3
      2e-14   51.2   0.0    5.9e-14   49.7   0.0    1.8  1  TIGR02189 GlrX-like_plant: glutaredoxin-like family
    1.1e-12   45.6   0.0    2.1e-12   44.6   0.0    1.4  1  TIGR02190 GlrX-dom: glutaredoxin-family domain
    6.8e-09   33.6   0.0    1.3e-08   32.7   0.0    1.4  1  TIGR00365 TIGR00365: monothiol glutaredoxin, Grx4 family
    0.00011   20.4   0.0    0.00026   19.2   0.0    1.6  1  TIGR02200 GlrX_actino: glutaredoxin-like protein
     0.0005   18.4   0.0    0.00095   17.5   0.0    1.4  1  TIGR02196 GlrX_YruB: glutaredoxin-like protein, YruB-family
      0.005   14.8   0.0      0.011   13.7   0.0    1.5  1  TIGR02183 GRXA: glutaredoxin, GrxA family


Domain annotation for each model (and alignments):
>> TIGR00816  tdt: C4-dicarboxylate transporter/malic acid transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.2       2.5   1.1e+03      69     109 ..     179     219 ..     175     227 .. 0.59
   2 !   92.0  18.6     2e-29   9.3e-27       2     308 ..     374     729 ..     373     738 .. 0.74

  Alignments for each domain:
  == domain 1    score: -3.5 bits;  conditional E-value: 2.5
   TIGR00816  69 pvlssFialipisilvlailla..klarplalellvigvivql 109
                  v+    a i ++ +v+ai+++   +a+   l++ + +++++ 
  MMETSP1137-20121227|8896_1 179 VVRV--NAAIVVALSVVAIIFRdrSWAKWFVLGMCIDYTVLMC 219
                 4444..5667777777777775224666666666555555555 PP

  == domain 2    score: 92.0 bits;  conditional E-value: 2e-29
   TIGR00816   2 kaswFaivlgtgglalaslsl................sellpilkviskvlvilaillfvlflsvwllrlikypeevkaelkhpvlssFialipisilvlaillaklarplale........llvigvivqllfsvlavfelfknesieiehvspgwylPpvaailisvaalavlptet...........lkltvlf.ylglGaglflyllllavlllrlilsellpsalrptvfillaPiavsivalinivnssevitikeeflilaiilwGfglwqlllalvl.......llyylk..lklpfalgwwaFiFplaayvnstlevykifds......kvlqyigvilyvlliiiwal 308
                 ++ +Fa+++g++gla+a+ ++                s+ l i   + kv+ ++a +++v++ +++l+r++++ ++v+ e++ p++ +   +  i  +++a l + +   ++ +        l++ig+++ ++ +v+++   + ++  e+ehv+ +w++ pv++ + +++a +v +                l v +  +++  g f++l+l+++ ll+ ++ +     +r+  f+ +a +av+++a + +  ++e   ++ ++l +a +l  f  + +l  ++l       ++ y+    + pf++++w F+Fplaa++++ +  + + ++       ++  ++  +++++  +  l
  MMETSP1137-20121227|8896_1 374 QITYFAVPMGLAGLAVAWKLAtswtdtwalslglpgvSDTLDIPTIVYKVVGLIAAFVYVVLAALYLIRFLRFRRKVLKEWQCPLRGASFGMATICLMLFAFLVYDVDGDVDNKavpnfgraLWWIGAVGHMAMTVVKF-GEWVGKRLELEHVHVSWMILPVGNLVAAMVAPLVDALASrhgaataavygESLSVELgSFYFSFGYFMWLALFSITLLKVLTTHNSDESIRTLTFVWVAAPAVAGLADLVLCAEREKSDVVAPALSVAQCLPTFNQYLYLAIVMLlglswsaMP-YIAflGRAPFNMSYWNFVFPLAAIAAACVVYFATTGFlvgrvfAIVGLVAASAGAFVASMHTL 729
                 578***************87521111111111111113345555667789999*************************************************999999888888899****************999765.669***************999999888887766654444445677888774555555678899999******************************9987777777666667777777779999999999988887665433332121222223.44335689**************98876654444443311100044444444455555544444 PP

>> TIGR02180  GRX_euk: glutaredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.6   0.0   9.4e-23   4.3e-20       1      83 [.      55     135 ..      55     136 .. 0.96

  Alignments for each domain:
  == domain 1    score: 69.6 bits;  conditional E-value: 9.4e-23
   TIGR02180   1 VvvfsKsyCpYckkakelLkklkvkkalevveldklengselqdyLkeltgqrtVPrifingkfiGGsddlkklekkgkleel 83 
                 V+ fsK+yCp+c ++k +L++l v   l+v+e+d++ +g++l ++ k  t+++t P+++i+g++iGG+d+l++l+++g+l+ l
  MMETSP1137-20121227|8896_1  55 VFAFSKTYCPFCIEVKRTLSHLGVP--LAVIEIDSNADGAKLSAVSKANTKHKTYPSVYIKGQHIGGCDSLMSLQRSGELDRL 135
                 678*****************99999..****************************************************9875 PP

>> TIGR02181  GRX_bact: glutaredoxin 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.7   0.0   4.9e-19   2.2e-16       3      79 ..      57     135 ..      55     136 .. 0.86
   2 ?   -2.0   0.0       2.1   9.4e+02      48      72 ..     602     626 ..     595     631 .. 0.79

  Alignments for each domain:
  == domain 1    score: 57.7 bits;  conditional E-value: 4.9e-19
   TIGR02181   3 iYtkksCpycsrAkalLeekgvefeeievdkdk..eareemierskgrrtvPQifigdvhvGGcddLlaleregkLdkL 79 
                  ++k++Cp+c + k++L++ gv +  ie+d++   ++ + + +   +++t P ++i+ +h+GGcd L++l+r+g+Ld+L
  MMETSP1137-20121227|8896_1  57 AFSKTYCPFCIEVKRTLSHLGVPLAVIEIDSNAdgAKLSAVSKANTKHKTYPSVYIKGQHIGGCDSLMSLQRSGELDRL 135
                 5899******************999999998773245555555556789****************************98 PP

  == domain 2    score: -2.0 bits;  conditional E-value: 2.1
   TIGR02181  48 rrtvPQifigdvhvGGcddLlaler 72 
                  rt+  +++    v G  dL+   +
  MMETSP1137-20121227|8896_1 602 IRTLTFVWVAAPAVAGLADLVLCAE 626
                 5788889************986555 PP

>> TIGR02189  GlrX-like_plant: glutaredoxin-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.7   0.0   1.3e-16   5.9e-14       4      92 ..      49     137 ..      46     141 .. 0.93

  Alignments for each domain:
  == domain 1    score: 49.7 bits;  conditional E-value: 1.3e-16
   TIGR02189   4 lvsekavvifskssCClshvvkrLllelGvnPavveldkeaeakeiekallelgskeavPvvfvGGklvGgleevmalhlsgsLvpllk 92 
                 +   ++v  fsk+ C ++  vkr l++lGv  av+e+d++a++++++++  + + +++ P v++ G+ +Gg +++m+l  sg+L  l++
  MMETSP1137-20121227|8896_1  49 VLKRHPVFAFSKTYCPFCIEVKRTLSHLGVPLAVIEIDSNADGAKLSAVSKANTKHKTYPSVYIKGQHIGGCDSLMSLQRSGELDRLVR 137
                 667899****************************************999988889999**************************98877 PP

>> TIGR02190  GlrX-dom: glutaredoxin-family domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.6   0.0   4.7e-15   2.1e-12       6      75 ..      51     124 ..      47     126 .. 0.88

  Alignments for each domain:
  == domain 1    score: 44.6 bits;  conditional E-value: 4.7e-15
   TIGR02190   6 kkesvsvftkpGCPfCakakavLkekGldfeeivLgkdirtrslravtGa....ttvPqvfinGkliGgsdele 75 
                 k++ v  f+k  CPfC++ k +L + G+    i ++ ++ +  l av+ a    +t P v+i+G++iGg d l 
  MMETSP1137-20121227|8896_1  51 KRHPVFAFSKTYCPFCIEVKRTLSHLGVPLAVIEIDSNADGAKLSAVSKAntkhKTYPSVYIKGQHIGGCDSLM 124
                 5677899***************************************98762222578**************985 PP

>> TIGR00365  TIGR00365: monothiol glutaredoxin, Grx4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.7   0.0   2.8e-11   1.3e-08      14      98 ..      55     137 ..      43     138 .. 0.82

  Alignments for each domain:
  == domain 1    score: 32.7 bits;  conditional E-value: 2.8e-11
   TIGR00365  14 vvlymkGtpelpqCGfsakavqilkalgvefatvnvlede...eireelkeysnWPtiPqlyvkgelvGGcdivlelyesgelkkllk 98 
                 v+ + k       C f  ++ + l++lgv +a +++ +++   ++ +  k  ++  t+P +y+kg+ +GGcd ++ l +sgel++l++
  MMETSP1137-20121227|8896_1  55 VFAFSK-----TYCPFCIEVKRTLSHLGVPLAVIEIDSNAdgaKLSAVSKANTKHKTYPSVYIKGQHIGGCDSLMSLQRSGELDRLVR 137
                 555544.....5799*******************99877522257888899999*****************************99875 PP

>> TIGR02200  GlrX_actino: glutaredoxin-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   0.0   5.8e-07   0.00026       5      57 ..      58     112 ..      54     118 .. 0.78

  Alignments for each domain:
  == domain 1    score: 19.2 bits;  conditional E-value: 5.8e-07
   TIGR02200   5 YatswCgyCaslkrtLdkdgaeYevvdiekdeeaady..vksvndGnktvPtVkf 57 
                 + +++C++C ++krtL + g++  v++i+ + ++a+   v+  n   kt P V +
  MMETSP1137-20121227|8896_1  58 FSKTYCPFCIEVKRTLSHLGVPLAVIEIDSNADGAKLsaVSKANTKHKTYPSVYI 112
                 6789**************************9999974224445555567777755 PP

>> TIGR02196  GlrX_YruB: glutaredoxin-like protein, YruB-family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.0   2.1e-06   0.00095       4      63 ..      57     119 ..      54     123 .. 0.74

  Alignments for each domain:
  == domain 1    score: 17.5 bits;  conditional E-value: 2.1e-06
   TIGR02196   4 vYttpwCppCkkakeyLkskgiafeeidvekds..aaaeellkklg.qrsvPvivigekivvG 63 
                  ++++ Cp C ++k+ L + g++   i+++ ++  a    + k +  ++  P + i+++ + G
  MMETSP1137-20121227|8896_1  57 AFSKTYCPFCIEVKRTLSHLGVPLAVIEIDSNAdgAKLSAVSKANTkHKTYPSVYIKGQHIGG 119
                 57899*****************99888887766114555666655447888999888665655 PP

>> TIGR02183  GRXA: glutaredoxin, GrxA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   0.0   2.5e-05     0.011       4      77 ..      57     126 ..      55     132 .. 0.86

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 2.5e-05
   TIGR02183   4 ifGrpgcpycvrakqlaeklakeladfefryvdihaeGiskadlektvGkpvetvpqifvdekavGGctdfeal 77 
                  f +  cp+c+  k+   +l   la  e   +d  a+G     ++k+  k  +t p +++  +++GGc  + +l
  MMETSP1137-20121227|8896_1  57 AFSKTYCPFCIEVKRTLSHLGVPLAVIE---IDSNADGAKLSAVSKANTKH-KTYPSVYIKGQHIGGCDSLMSL 126
                 578889*****99999999999888877...9******9999999988875.8***************887665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (979 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       186  (0.0453437); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                         9  (0.00219405); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.62u 0.13s 00:00:00.75 Elapsed: 00:00:00.76
# Mc/sec: 1700.23
//
Query:       MMETSP1137-20121227|8897_1  [L=141]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      1e-22   78.3   2.4    1.4e-22   77.9   1.7    1.1  1  TIGR01079 rplX_bact: ribosomal protein L24
    1.2e-09   36.3   1.9    3.6e-09   34.9   1.3    1.6  1  TIGR01080 rplX_A_E: ribosomal protein L24
    3.6e-06   24.9   0.1    4.4e-06   24.6   0.0    1.2  1  TIGR00405 L26e_arch: ribosomal protein L24
     0.0053   14.4   0.2     0.0096   13.6   0.1    1.4  1  TIGR00922 nusG: transcription termination/antitermination factor NusG


Domain annotation for each model (and alignments):
>> TIGR01079  rplX_bact: ribosomal protein L24
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.9   1.7   1.4e-25   1.4e-22       3      79 ..      56     131 ..      54     136 .. 0.93

  Alignments for each domain:
  == domain 1    score: 77.9 bits;  conditional E-value: 1.4e-25
   TIGR01079   3 kikkgDtVlvisGkdkGkkGkvlkvlpkkdkviVegvnlvkkhvkpkeekekeggiiekEapidisnvalvdkktkk 79 
                  ++ gD+V+visG dkG +Gkv+++  kk+kv Veg+n+++kh+kp +e e  g+i ++E+ +++snv l d++++ 
  MMETSP1137-20121227|8897_1  56 TLRTGDQVVVISGSDKGSTGKVISIDVKKNKVTVEGINMRTKHMKPMKEGE-TGRILKREMSVHVSNVRLADADDDA 131
                 6899**********************************************9.6*****************9987665 PP

>> TIGR01080  rplX_A_E: ribosomal protein L24
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.9   1.3   3.5e-12   3.6e-09      32      82 ..      47      97 ..      40     134 .. 0.72

  Alignments for each domain:
  == domain 1    score: 34.9 bits;  conditional E-value: 3.5e-12
   TIGR01080 32 rekygkralpvrkgdkvrilrGdfkGkeGkvlkvdlkryriyvegvtkekv 82
                r  + ++a  +r gd+v ++ G+ kG  Gkv+++d+k+ +++veg++++  
  MMETSP1137-20121227|8897_1 47 RSCLSMKAATLRTGDQVVVISGSDKGSTGKVISIDVKKNKVTVEGINMRTK 97
                556778999*************************************97643 PP

>> TIGR00405  L26e_arch: ribosomal protein L24
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.6   0.0   4.3e-09   4.4e-06      81     123 ..      53      93 ..      29     114 .. 0.83

  Alignments for each domain:
  == domain 1    score: 24.6 bits;  conditional E-value: 4.3e-09
   TIGR00405  81 kkiiesikkGdvveiisGpfkGerakvirvdeakeevtlelle 123
                 k  +  ++ Gd v +isG  kG   kvi +d +k++vt+e ++
  MMETSP1137-20121227|8897_1  53 K--AATLRTGDQVVVISGSDKGSTGKVISIDVKKNKVTVEGIN 93 
                 4..45799********************************887 PP

>> TIGR00922  nusG: transcription termination/antitermination factor NusG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   0.1   9.4e-06    0.0096     115     152 ..      53      90 ..      35     100 .. 0.88

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 9.4e-06
   TIGR00922 115 skvefekgeqvrvieGpFanftgtveevdkekkklkvl 152
                 ++ +  +g+qv vi+G  +  tg+v ++d  k+k++v+
  MMETSP1137-20121227|8897_1  53 KAATLRTGDQVVVISGSDKGSTGKVISIDVKKNKVTVE 90 
                 4567899****************************995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (141 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       212  (0.0516821); expected 82.0 (0.02)
Passed bias filter:                      132  (0.0321794); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.20u 0.16s 00:00:00.36 Elapsed: 00:00:00.56
# Mc/sec: 326.50
//
Query:       MMETSP1137-20121227|8898_1  [L=160]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.6e-17   61.4   0.0    3.4e-17   60.3   0.0    1.5  2  TIGR01068 thioredoxin: thioredoxin
      6e-06   24.4   0.1    1.7e-05   22.9   0.0    1.7  2  TIGR01126 pdi_dom: protein disulfide-isomerase domain
     0.0016   15.9   0.1     0.0045   14.4   0.0    1.7  2  TIGR01130 ER_PDI_fam: protein disulfide isomerases


Domain annotation for each model (and alignments):
>> TIGR01068  thioredoxin: thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0      0.83   1.1e+03      15      24 ..      21      30 ..       9      56 .. 0.52
   2 !   60.3   0.0   2.5e-20   3.4e-17      26     100 ..      86     158 ..      82     159 .. 0.91

  Alignments for each domain:
  == domain 1    score: -2.3 bits;  conditional E-value: 0.83
   TIGR01068 15 klvlvDfwAe 24
                 l +v f A 
  MMETSP1137-20121227|8898_1 21 GLTIVYFTAA 30
                4555555553 PP

  == domain 2    score: 60.3 bits;  conditional E-value: 2.5e-20
   TIGR01068  26 CgpCkmlaPvleelakeleekvkvvKlnvdeeqeiaakygirsiPtlllfkngkevkrvvGakpkaalkeliekl 100
                  gpC+m++Pv e l++e + +++++K++vd+ +e+aa++g++++Pt  ++kngk v+++vGa   ++lk+ ++++
  MMETSP1137-20121227|8898_1  86 SGPCRMVSPVYEMLSQEHA-SADFLKVDVDDLPEVAAAAGVSAMPTFKFMKNGKCVDTIVGADV-EKLKSSLSQH 158
                 49*************7777.6****************************************976.7788887765 PP

>> TIGR01126  pdi_dom: protein disulfide-isomerase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0      0.34   4.7e+02       6      25 ..      13      31 ..       9      65 .. 0.56
   2 !   22.9   0.0   1.2e-08   1.7e-05      26      83 ..      86     139 ..      75     159 .. 0.86

  Alignments for each domain:
  == domain 1    score: -1.0 bits;  conditional E-value: 0.34
   TIGR01126  6 fdelvldenkdvlvefyaPW 25
                +d++++ ++  ++v f+a  
  MMETSP1137-20121227|8898_1 13 YDKALK-KDGLTIVYFTAAV 31
                555555.6777777777753 PP

  == domain 2    score: 22.9 bits;  conditional E-value: 1.2e-08
   TIGR01126  26 CGhCkklaPeyeklakelkkeeekvkiakvdataekelaskfkvsgfPtlkffkkgkk 83 
                  G C+ ++P+ye l++e ++++      kvd +   e+a+  +vs+ Pt kf+k+gk 
  MMETSP1137-20121227|8898_1  86 SGPCRMVSPVYEMLSQEHASAD----FLKVDVDDLPEVAAAAGVSAMPTFKFMKNGKC 139
                 489*************999764....89***************************994 PP

>> TIGR01130  ER_PDI_fam: protein disulfide isomerases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0      0.14     2e+02     119     155 ..      11      47 ..       3      64 .. 0.62
   2 !   14.4   0.0   3.3e-06    0.0045     376     433 ..      87     140 ..      81     160 .] 0.51

  Alignments for each domain:
  == domain 1    score: -0.9 bits;  conditional E-value: 0.14
   TIGR01130 119 edlekllekkevvvvgvfkdldselvetflevaeklr 155
                 e+ +k l+k+ +++v++ +++ ++   +f+++ + + 
  MMETSP1137-20121227|8898_1  11 EAYDKALKKDGLTIVYFTAAVVEANCGAFQNLHSVAL 47 
                 4445556666666777666666666666666655544 PP

  == domain 2    score: 14.4 bits;  conditional E-value: 3.3e-06
   TIGR01130 376 GHCkkLapiYeelaekykkeedvviakldataNdvpefevegFPTilfvpagkksepv 433
                 G C+   p+Ye l+++ ++  d + + +d       ++ v++ PT +f+++gk    v
  MMETSP1137-20121227|8898_1  87 GPCRMVSPVYEMLSQEHASA-DFLKVDVDDLPEVAAAAGVSAMPTFKFMKNGKC---V 140
                 44555555555555555554.444444444333333355555555555555544...3 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (160 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       145  (0.0353486); expected 82.0 (0.02)
Passed bias filter:                      133  (0.0324232); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.19u 0.14s 00:00:00.33 Elapsed: 00:00:00.44
# Mc/sec: 479.96
//
Query:       MMETSP1137-20121227|8899_1  [L=249]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.9e-13   47.0   0.0    6.9e-13   46.5   0.0    1.2  1  TIGR00231 small_GTP: small GTP-binding protein domain


Domain annotation for each model (and alignments):
>> TIGR00231  small_GTP: small GTP-binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.5   0.0   1.7e-16   6.9e-13       3      98 ..      96     187 ..      94     199 .. 0.88

  Alignments for each domain:
  == domain 1    score: 46.5 bits;  conditional E-value: 1.7e-16
   TIGR00231   3 eikivivGhvdvGKstLlnsllknkisiteskpgvtrdyvteqieedGktykvnllDTaGqedfdairrlyvreverslevvdivilvldveegle 98 
                 e k++++G +++GK+t+l++l+  +     ++p+++++++t ++    k  ++ ++D++G+++ +++ r+y++ + ++++vvd + + +++e++ e
  MMETSP1137-20121227|8899_1  96 ELKLLMLGLDAAGKTTILYKLKLGE--VLMTVPTIGFNVETLKFNKSTKG-EFVVWDVGGKDKIRPLYRHYFPGTRALIFVVDSNDR-DRFEDARE 187
                 5799*********************..566679*********99988855.*********************************999.88888874 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (249 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       107  (0.0260848); expected 82.0 (0.02)
Passed bias filter:                      106  (0.0258411); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.23u 0.11s 00:00:00.34 Elapsed: 00:00:00.40
# Mc/sec: 821.63
//
Query:       MMETSP1137-20121227|8900_1  [L=305]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (305 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        65  (0.0158459); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.16s 00:00:00.40 Elapsed: 00:00:00.40
# Mc/sec: 1006.42
//
Query:       MMETSP1137-20121227|8901_1  [L=336]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0024   15.0   0.9     0.0036   14.4   0.6    1.2  1  TIGR03575 selen_PSTK_euk: L-seryl-tRNA(Sec) kinase


Domain annotation for each model (and alignments):
>> TIGR03575  selen_PSTK_euk: L-seryl-tRNA(Sec) kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.6   8.8e-07    0.0036     218     303 ..     102     194 ..      94     204 .. 0.77

  Alignments for each domain:
  == domain 1    score: 14.4 bits;  conditional E-value: 8.8e-07
   TIGR03575 218 skkvtdllltalenpikaleenleqketd.rii......tstnilhqadqtlrrivsqtmkkakdekvsayelkllaeelnklkadfledlre 303
                  k++  ll+ a +np+    e leqk+++ r+        ++++  + d+  rr+ ++t ++a+de++  ++    a++     a++  d r 
  MMETSP1137-20121227|8901_1 102 MKELWSLLISAQQNPLGIPTEFLEQKKEEiRVKkeeqerIAAQLRAKRDEVERRVEAETQRRARDEQAYDEDADGDADDAAAHGAELHHDDRG 194
                 578899**********99888888864431332111111578889999********************9999888888888887777777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (336 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       285  (0.0694783); expected 82.0 (0.02)
Passed bias filter:                      130  (0.0316919); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.16s 00:00:00.56 Elapsed: 00:00:00.73
# Mc/sec: 607.51
//
Query:       MMETSP1137-20121227|8902_1  [L=614]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (614 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        94  (0.0229157); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.16s 00:00:00.53 Elapsed: 00:00:00.41
# Mc/sec: 1976.62
//
Query:       MMETSP1137-20121227|8903_1  [L=170]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (170 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        51  (0.012433); expected 82.0 (0.02)
Passed bias filter:                       41  (0.00999512); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.13s 00:00:00.29 Elapsed: 00:00:00.28
# Mc/sec: 773.73
//
Query:       MMETSP1137-20121227|8904_1  [L=554]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   3.1e-117  389.8   2.4   3.8e-117  389.5   1.7    1.1  1  TIGR01035 hemA: glutamyl-tRNA reductase
    4.9e-06   23.7   0.0    9.3e-06   22.8   0.0    1.4  1  TIGR00507 aroE: shikimate 5-dehydrogenase
    4.6e-05   20.5   0.0    7.8e-05   19.8   0.0    1.5  1  TIGR01809 Shik-DH-AROM: shikimate-5-dehydrogenase
     0.0024   14.9   0.0     0.0043   14.0   0.0    1.4  1  TIGR03911 pyrrolys_PylD: pyrrolysine biosynthesis protein PylD
     0.0053   14.0   0.0      0.017   12.3   0.0    1.8  2  TIGR02356 adenyl_thiF: thiazole biosynthesis adenylyltransferase ThiF


Domain annotation for each model (and alignments):
>> TIGR01035  hemA: glutamyl-tRNA reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  389.5   1.7  4.7e-120  3.8e-117       2     416 .]     122     553 ..     121     553 .. 0.93

  Alignments for each domain:
  == domain 1    score: 389.5 bits;  conditional E-value: 4.7e-120
   TIGR01035   2 lvlgvshksapvevrEklsideeelkkaleslkaepsieeaivlsTCNRvEiyavvenleelksallkilaetkklseedlekyllilldesaveHlfrVasgLdSlvvGEeQilgQvkeaykvakee........ktvgkvLerlfkkalkvgkrvrteTdIsksavSvssaAvelaekil.gs....LkgkkvlliGaGemaeLvakhLkekgvkkvlilnRtyekaekLakeleeeavkle...kleealaeadivissTgapepivskedleralker.krplllvDiavPRdvdpevaelegvflydvDdlkevveenlaerkeeaekaeaiveeeveefkqwlrsleveptikelrekaeevrekelekalkkleak.keekevleklakklvnkllheptvklkelaekeeseellealkelfdle 416
                 lv+g+shk+a v+vrEklsi+e++ + a  +l ++ si+ea+vlsTCNR+E+y+ +e+      + l +l+e ++l   +l+  l++l++e+av+Hl+rV++gLdSlvvGE Qil+Qvk ++  a +         + +gkvL rl++ a+  gk vr+eT+I k+avS+ssaAvela  +  ++    Lk+ +v +iGaG+m  L+  hL+ +gv+kv++lnR++ +ae+La e  +  +++    +l +++++ ++v++sT+a+  iv++  l++ +  +  +pl+l+Di+vPR+v+ e ++++gv +y+vDdlk+vv+ n+a+rke++ +ae ++ +e+++f +w++sl+ +p+i+el++k e+vr +el ka kkl+   + ek+ +e  +k ++nkllh+p+  l++ + + ++   +++++++f l+
  MMETSP1137-20121227|8904_1 122 LVIGLSHKTATVDVREKLSIKEADWNAAAAKLCEYDSITEAAVLSTCNRFELYLAAEDHFAATRDALAFLRERSQLTDMELRPNLFMLQNEDAVYHLLRVSAGLDSLVVGEGQILSQVKACHSHAISTdteedaipGSAGKVLGRLLNTAVMSGKYVRSETEIAKGAVSISSAAVELAVLKCpEDlsqsLKDVRVAIIGAGKMSRLLLTHLASHGVTKVTLLNRSRPRAEELAAEYPDLDIHVGlmdELWQTVETSELVFTSTSATGCIVTEPLLRERVWGQtPQPLVLIDISVPRNVESECNNVDGVKAYNVDDLKQVVARNQAKRKEKILEAEVLLRAELAKFLAWQESLKYVPAISELQAKFEQVRAAELGKAMKKLKGLsDAEKAAVEVATKGIINKLLHAPMSYLRSEDTDGSKA-SVRQIRDVFKLD 553
                 699*****************************************************9999999999********************************************************99865411222333468**************************************96443133444599**********************************************987776555699***********************9998888777699************************************************************************************************667888999*********************977766655.999*****9875 PP

>> TIGR00507  aroE: shikimate 5-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.8   0.0   1.1e-08   9.3e-06     108     169 ..     307     366 ..     300     401 .. 0.75

  Alignments for each domain:
  == domain 1    score: 22.8 bits;  conditional E-value: 1.1e-08
   TIGR00507 108 LeklsklksekrvliiGAGGaakavaleLlka.dkeviiaNRtvekaeelaerlqelgeilal 169
                 L++   lk + rv+iiGAG  ++ ++++L+++  ++v+++NR+  +aeela + + l   + l
  MMETSP1137-20121227|8904_1 307 LSQ--SLK-DVRVAIIGAGKMSRLLLTHLASHgVTKVTLLNRSRPRAEELAAEYPDLDIHVGL 366
                 555..566.889*******************95689***************999886554443 PP

>> TIGR01809  Shik-DH-AROM: shikimate-5-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   0.0   9.5e-08   7.8e-05     123     177 ..     311     365 ..     293     477 .. 0.82

  Alignments for each domain:
  == domain 1    score: 19.8 bits;  conditional E-value: 9.5e-08
   TIGR01809 123 vantaglviGaGGtsraavyaLasLGvkkifvinRskdklkkLvellvsefviir 177
                 + +++  +iGaG  sr  +  Las Gv+k++++nRs+ ++++L   ++   + ++
  MMETSP1137-20121227|8904_1 311 LKDVRVAIIGAGKMSRLLLTHLASHGVTKVTLLNRSRPRAEELAAEYPDLDIHVG 365
                 4567889**********************************99887776655554 PP

>> TIGR03911  pyrrolys_PylD: pyrrolysine biosynthesis protein PylD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.0   5.2e-06    0.0043     137     231 ..     305     405 ..     279     425 .. 0.76

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 5.2e-06
   TIGR03911 137 dllkaglkekdvlviGlGkvGtaaavalvkkGa.kvyvydkekelleklvkdl....pevgieaeesealkkfslifeatPeaglis.eevlsddtlisaP 231
                 + l+  lk+  v +iG+Gk+ +   ++l ++G+ kv  ++  +  +e l+ +      +vg+  e  + ++  +l+f +t + g i  e  l +++   +P
  MMETSP1137-20121227|8904_1 305 EDLSQSLKDVRVAIIGAGKMSRLLLTHLASHGVtKVTLLNRSRPRAEELAAEYpdldIHVGLMDELWQTVETSELVFTSTSATGCIVtEPLLRERVWGQTP 405
                 5688899*************************648999************999333445666677778889999****99998876505566666665555 PP

>> TIGR02356  adenyl_thiF: thiazole biosynthesis adenylyltransferase ThiF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0       1.1   8.9e+02      99     124 ..     158     183 ..     154     185 .. 0.88
   2 !   12.3   0.0   2.1e-05     0.017      15      53 ..     307     345 ..     297     355 .. 0.88

  Alignments for each domain:
  == domain 1    score: -3.1 bits;  conditional E-value: 1.1
   TIGR02356  99 evtaenleelieqvdlvlDctDnfkt 124
                 ++t++++ + +++ +l l + D f++
  MMETSP1137-20121227|8904_1 158 SITEAAVLSTCNRFELYLAAEDHFAA 183
                 7999999999***********99986 PP

  == domain 2    score: 12.3 bits;  conditional E-value: 2.1e-05
   TIGR02356  15 gqqklleskvliiGaGgLgsavaeylaaaGvgtiaivDd 53 
                   q l++ +v iiGaG ++   ++ la+ Gv +++++ +
  MMETSP1137-20121227|8904_1 307 LSQSLKDVRVAIIGAGKMSRLLLTHLASHGVTKVTLLNR 345
                 568899****************************99865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (554 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       174  (0.0424183); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.42u 0.17s 00:00:00.59 Elapsed: 00:00:00.53
# Mc/sec: 1379.66
//
Query:       MMETSP1137-20121227|8905_1  [L=255]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (255 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        78  (0.0190151); expected 82.0 (0.02)
Passed bias filter:                       44  (0.0107265); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.14s 00:00:00.39 Elapsed: 00:00:00.48
# Mc/sec: 701.19
//
Query:       MMETSP1137-20121227|8906_1  [L=379]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (379 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       119  (0.0290102); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.14s 00:00:00.42 Elapsed: 00:00:00.45
# Mc/sec: 1111.64
//
Query:       MMETSP1137-20121227|8907_1  [L=262]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (262 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        99  (0.0241346); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.17s 00:00:00.40 Elapsed: 00:00:00.31
# Mc/sec: 1115.52
//
Query:       MMETSP1137-20121227|8908_1  [L=164]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (164 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        90  (0.0219405); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.16s 00:00:00.33 Elapsed: 00:00:00.30
# Mc/sec: 721.54
//
Query:       MMETSP1137-20121227|8909_1  [L=482]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (482 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       144  (0.0351048); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.14s 00:00:00.45 Elapsed: 00:00:00.56
# Mc/sec: 1116.12
//
Query:       MMETSP1137-20121227|8911_1  [L=245]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (245 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        84  (0.0204778); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.14s 00:00:00.34 Elapsed: 00:00:00.33
# Mc/sec: 979.92
//
Query:       MMETSP1137-20121227|8912_1  [L=144]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (144 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        67  (0.0163335); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.17s 00:00:00.35 Elapsed: 00:00:00.43
# Mc/sec: 442.01
//
Query:       MMETSP1137-20121227|8913_1  [L=285]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.1e-24   83.3   0.0    9.2e-24   82.2   0.0    1.5  1  TIGR03060 PS_II_psb29: photosystem II biogenesis protein Psp29
  ------ inclusion threshold ------
      0.017   12.1   0.0        1.1    6.2   0.0    2.1  2  TIGR03994 rSAM_HemZ: coproporphyrinogen dehydrogenase HemZ


Domain annotation for each model (and alignments):
>> TIGR03060  PS_II_psb29: photosystem II biogenesis protein Psp29
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.2   0.0   4.5e-27   9.2e-24       3     213 ..      68     260 ..      66     261 .. 0.90

  Alignments for each domain:
  == domain 1    score: 82.2 bits;  conditional E-value: 4.5e-27
   TIGR03060   3 ekrTvsDsKraFhaafprviaslYrrvvdElLVElhLLsvqkdFkadplFalGlvtvfdkftegYrPeehlealfealcssveldpeqlredakkllesakeksleelkellkekekkeksaealaaiagkekfkySRlfaiGllslleeaaedkekdeedlkerlkelaeklglskdrvekDlelyksnlekmeqalelveealeaerrk 213
                 + +Tv ++K aF +a+ r++ ++ + +v E+L  + L     +F+++ +Fa G     d+f +g   e+++++l e+lc++v+ld +q+  da++l+e+a   + e+   ll+++        ++++ia++  fkyS  f  G+lsl+  ++       e  +e +++ ++++gl  +r+ kD  ++++ +ek++++++++ e+ +a +rk
  MMETSP1137-20121227|8913_1  68 RPSTVGEAKDAFQKAYGRPVGPMSQSFVSEMLSSITLAMASPNFQYTRVFAFGFQALCDNFLNGVG-EDEKANLKESLCKAVGLDVKQIDADAETLKEQASAGTEED---LLASD--------EFKSIAEQRLFKYSYPFGAGMLSLMPLVD------VEPSEESITRWTAAVGLRPERLIKDWRFFENAIEKLAEVRQMMMEMQAAAKRK 260
                 578*************************************************************86.667789***********************99998887777...44433........3556788999**************98877......33456789999**************************************9998 PP

>> TIGR03994  rSAM_HemZ: coproporphyrinogen dehydrogenase HemZ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   0.0   0.00051       1.1     228     302 ..     112     186 ..      59     203 .. 0.82
   2 ?    4.1   0.1    0.0022       4.5      19      73 ..     215     271 ..     205     283 .. 0.65

  Alignments for each domain:
  == domain 1    score: 6.2 bits;  conditional E-value: 0.00051
   TIGR03994 228 afklarelGfdninmDlivGLpgetleeveetleevkklaPesltvHalalkrasrlklekekyeeakaeetaem 302
                 +++ + + Gf+ +  +++ G+ ++++++++e+l ++  l+ +++   a +lk  ++  +e++ ++++++++ ae+
  MMETSP1137-20121227|8913_1 112 QYTRVFAFGFQALCDNFLNGVGEDEKANLKESLCKAVGLDVKQIDADAETLKEQASAGTEEDLLASDEFKSIAEQ 186
                 35555679*********************************************9999999988887777776665 PP

  == domain 2    score: 4.1 bits;  conditional E-value: 0.0022
   TIGR03994  19 elpWGiltGvRPvkivlkll..eeg.keeeeiekllkekylvseekaelaleiakrek 73 
                  + W +  G+RP +++ ++   e+  ++ +e++++++e  ++ ++k +  l  a++e+
  MMETSP1137-20121227|8913_1 215 ITRWTAAVGLRPERLIKDWRffENAiEKLAEVRQMMMEMQAAAKRKEASKL-KAEAER 271
                 457999**********98752244313446788888887777766654333.344444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (285 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       212  (0.0516821); expected 82.0 (0.02)
Passed bias filter:                      110  (0.0268162); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.27u 0.16s 00:00:00.43 Elapsed: 00:00:00.38
# Mc/sec: 989.92
//
Query:       MMETSP1137-20121227|8914_1  [L=233]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (233 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       158  (0.0385178); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.17s 00:00:00.39 Elapsed: 00:00:00.31
# Mc/sec: 992.05
//
Query:       MMETSP1137-20121227|8915_1  [L=801]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.1e-23   81.7   0.0    1.8e-23   81.0   0.0    1.3  1  TIGR00231 small_GTP: small GTP-binding protein domain
  ------ inclusion threshold ------
      0.016   12.2   0.4       0.22    8.4   0.1    2.0  2  TIGR03597 GTPase_YqeH: ribosome biogenesis GTPase YqeH


Domain annotation for each model (and alignments):
>> TIGR00231  small_GTP: small GTP-binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.0   0.0   8.7e-27   1.8e-23       3     157 ..      11     160 ..       9     164 .. 0.89

  Alignments for each domain:
  == domain 1    score: 81.0 bits;  conditional E-value: 8.7e-27
   TIGR00231   3 eikivivGhvdvGKstLlnsllknkisiteskp..gvtrdyvteqieedGktykvnllDTaGqedfdairrlyvreverslevvdivilvldveeglekqtkeiiheakkkgvpiilvvnKiDlkd.dlktkvkslfaklnaepiielsaetgknidk 157
                 ++k+v+vG+++vGK+t  ++ l+ + +++++++  gv+ +  +  ++  G    +n++DTaGqe+f  +r+ y+ + +  + ++d++++ +++++++ ++ + + + ++   +pi+lv+nK+D k+ ++k k+ + f++ ++ ++  +sa+   n++k
  MMETSP1137-20121227|8915_1  11 TFKLVLVGDGGVGKTTFVKRHLTGE-FEKKYVAtlGVEVHPLEF-CTTHG-SLVFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSR-ITYKNVP-NWHRDLVRVCE--TIPIVLVGNKVDVKErKVKAKQIT-FHRKKNLQYYDISAKSNYNFEK 160
                 689**********************.******977777777886.55555.48************************************.*******.***********..***************766666655.5666666899999999888876 PP

>> TIGR03597  GTPase_YqeH: ribosome biogenesis GTPase YqeH
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.0     0.012        26     148     186 ..       4      42 ..       2      47 .. 0.79
   2 ?    8.4   0.1   0.00011      0.22      81     124 ..     105     148 ..     101     156 .. 0.86

  Alignments for each domain:
  == domain 1    score: 1.7 bits;  conditional E-value: 0.012
   TIGR03597 148 likkarekkdvyvvGvtNVGKSsliNkllklnkgkkkvi 186
                 ++++++   + ++vG   VGK +++ + l+ + +kk v 
  MMETSP1137-20121227|8915_1   4 MMQQQKPTFKLVLVGDGGVGKTTFVKRHLTGEFEKKYVA 42 
                 566777788999*************99887776666555 PP

  == domain 2    score: 8.4 bits;  conditional E-value: 0.00011
   TIGR03597  81 likelkrfvkenkvllvvNKidllpksvklekikewlkkeakee 124
                 + ++l r++++ +++lv+NK+d+  ++vk ++i+   kk+++  
  MMETSP1137-20121227|8915_1 105 WHRDLVRVCETIPIVLVGNKVDVKERKVKAKQITFHRKKNLQYY 148
                 6678899999***********************98888777655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (801 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       256  (0.0624086); expected 82.0 (0.02)
Passed bias filter:                      135  (0.0329108); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.57u 0.18s 00:00:00.75 Elapsed: 00:00:00.53
# Mc/sec: 1994.78
//
Query:       MMETSP1137-20121227|8916_1  [L=147]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (147 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       193  (0.0470502); expected 82.0 (0.02)
Passed bias filter:                      157  (0.038274); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.16s 00:00:00.36 Elapsed: 00:00:00.34
# Mc/sec: 570.66
//
Query:       MMETSP1137-20121227|8917_1  [L=212]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (212 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       163  (0.0397367); expected 82.0 (0.02)
Passed bias filter:                      134  (0.032667); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.18s 00:00:00.40 Elapsed: 00:00:00.81
# Mc/sec: 345.45
//
Query:       MMETSP1137-20121227|8918_1  [L=88]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.04   11.5   0.3      0.058   11.0   0.0    1.4  2  TIGR01711 gspJ: general secretion pathway protein J


Domain annotation for each model (and alignments):
>> TIGR01711  gspJ: general secretion pathway protein J
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0      0.31   1.3e+03      66      73 ..      24      31 ..      15      46 .. 0.44
   2 ?   11.0   0.0   1.4e-05     0.058       3      34 ..      53      84 ..      51      87 .. 0.89

  Alignments for each domain:
  == domain 1    score: -3.1 bits;  conditional E-value: 0.31
   TIGR01711 66 rtdgeask 73
                r++ ++ +
  MMETSP1137-20121227|8918_1 24 RKETGKHN 31
                33333222 PP

  == domain 2    score: 11.0 bits;  conditional E-value: 1.4e-05
   TIGR01711  3 ftllellvaiaifaslslgayqvldsvlrsde 34
                f l  +++ i+ifa++s+  y  l sv++ d+
  MMETSP1137-20121227|8918_1 53 FPLRAIIIGISIFAAISVVLYLYLSSVVEEDD 84
                6777899********************98775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (88 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       142  (0.0346173); expected 82.0 (0.02)
Passed bias filter:                      128  (0.0312043); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.15u 0.18s 00:00:00.32 Elapsed: 00:00:00.30
# Mc/sec: 387.17
//
Query:       MMETSP1137-20121227|8919_1  [L=719]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.3e-08   32.0   1.5    1.3e-08   32.0   1.0    2.2  2  TIGR00895 2A0115: MFS transporter, aromatic acid:H+ symporter (AAHS) family
    2.1e-08   31.2   1.1    2.1e-08   31.2   0.8    2.8  3  TIGR00898 2A0119: cation transport protein
    6.8e-06   23.2   0.1    6.8e-06   23.2   0.1    2.3  2  TIGR00881 2A0104: phosphoglycerate transporter family protein
    0.00099   14.9   3.7     0.0097   11.6   0.1    2.2  2  TIGR01299 synapt_SV2: synaptic vesicle protein SV2


Domain annotation for each model (and alignments):
>> TIGR00895  2A0115: MFS transporter, aromatic acid:H+ symporter (AAHS) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.0   1.0   1.3e-11   1.3e-08      53     232 ..     174     360 ..     119     372 .. 0.72
   2 ?    0.8   5.0     0.037        38     271     398 .]     425     564 ..     377     564 .. 0.67

  Alignments for each domain:
  == domain 1    score: 32.0 bits;  conditional E-value: 1.3e-11
   TIGR00895  53 elGfllsagLiGmvlGallfgplaDrigRkrvllvsillfsvftlasalatnvtqLlvlRflaglGlGgllpnliaLvsEyapkrfratvvglvavGya....iGaavggllaal.lipafgWr..slflvggiiplllllllikvLpEsikflvekkpekvrkilnaiapslqaeaqs...elaeekse 232
                  +G l ++ ++G +  a l g++aDr+gR+rvll+s+  ++++ +  +l+ +++  l +R l    l g +  ++ L  E  ++r +a v+g+v++  +    +G a+gg+  ++   p+f     sl+ vg  ++++    ++  LpE  k l  +++++ r++ ++   ++++ + +    la+++s+
  MMETSP1137-20121227|8919_1 174 VAGLLPTFLIMGRIPTAALWGVAADRFGRRRVLLLSLSSIAAGNIFFGLSRSLWLALTVRCLLLGALNGWTSVMVLLCGELGGDR-QADVIGYVFSTGQllnlVGPALGGFTYGVgFGPTFPALlpSLLGVG--VAMVAFTATALYLPETSKSLLARQESQRRQRASEHRSEAERGQLEadqMLAQQTSS 360
                 36888999**********************************************9999999986668888988888999988887.6899999987655122267777777655436788875411455555..7777778888999**99999999888888888877766666555433244444443 PP

  == domain 2    score: 0.8 bits;  conditional E-value: 0.037
   TIGR00895 271 sWlPkLlveagaslskaalllvllnvGg...vlgslllgaladrlgpk.vlalllllaav...favlvvs.tlssptllllllvilGl...fvngaqsgllalmaefYpt.aiRatgvgwaigiGrlgaiigpilagvll 398
                  W    l+  g  l +  l ++l+ +G+   ++ s ++g  + rlg + +l++++++a++   f+ lv + ++ s++ +ll +++l +    +  a sg+la++ ++ ++  + +t +g++  +  +g ++gp+ ++ ll
  MMETSP1137-20121227|8919_1 425 LWAIASLRAGGLALGEEQLGMMLTAAGAgslLFTSTFIGPCVRRLGARsALVVGSVVAGIaivFIPLVRApFIPSTAAMLLSALLLSInsaSILCAASGVLAASNNILASlPNVGTVQGVLATVEGIGKMLGPAAVAPLL 564
                 45544445555566566666666665543335788889999999999988888888888622255566665566666666655555551113455667777777777765257799999999999999999999888775 PP

>> TIGR00898  2A0119: cation transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.2   0.8     2e-11   2.1e-08     126     230 ..     173     273 ..      52     279 .. 0.81
   2 ?   -0.3   0.1     0.072        73     481     503 ..     303     325 ..     295     328 .. 0.83
   3 ?   -1.0   1.1      0.12   1.3e+02     378     408 ..     465     495 ..     414     520 .. 0.73

  Alignments for each domain:
  == domain 1    score: 31.2 bits;  conditional E-value: 2e-11
   TIGR00898 126 wkvkltqsvvfvGvLlGslvlGqlsDrfGRkkvLllstlvtavsgvltafspnytvflvlrlLvGvgiagivvvalvLitEflpkkaRaivgilievffalGlll 230
                 +++ l+ + + +G +  ++++G  +DrfGR++vLlls    a+ ++   +s +++  l +r L   ++ g +++++vL    l+    a    +i ++f+ G+ll
  MMETSP1137-20121227|8919_1 173 FVAGLLPTFLIMGRIPTAALWGVAADRFGRRRVLLLSLSSIAAGNIFFGLSRSLWLALTVRCLLLGALNG-WTSVMVLLCGELGGDRQAD---VIGYVFSTGQLL 273
                 45678899999**************************************************998888899.8888888776666544333...345677777765 PP

  == domain 2    score: -0.3 bits;  conditional E-value: 0.072
   TIGR00898 481 fgvlallagllsllLPetkgvaL 503
                  gv+++ + +++l LPet ++ L
  MMETSP1137-20121227|8919_1 303 VGVAMVAFTATALYLPETSKSLL 325
                 58999999**********99876 PP

  == domain 3    score: -1.0 bits;  conditional E-value: 0.12
   TIGR00898 378 lidrLgRrktmaaslllagvallllllvpee 408
                  ++rLg r ++++  ++ag+a++++ lv   
  MMETSP1137-20121227|8919_1 465 CVRRLGARSALVVGSVVAGIAIVFIPLVRAP 495
                 5899999999999999999999999888765 PP

>> TIGR00881  2A0104: phosphoglycerate transporter family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.2   0.1   6.6e-09   6.8e-06      49     209 ..     192     355 ..     183     359 .. 0.80
   2 ?    0.4   2.8     0.053        54      26     166 ..     437     591 ..     421     637 .. 0.56

  Alignments for each domain:
  == domain 1    score: 23.2 bits;  conditional E-value: 6.6e-09
   TIGR00881  49 vvgvvsDrvsarvflaigLilvaivnlflgfssslwvlial.lalnGlfqglgwppcgrlltkwfsrserGtvvaiwnishnvggallpplvllaialllswhvvfivpgiiaiivslilll...llrdspqsvglpkleelrnee.keedkekkeeeltkkeill 209
                 + gv++Dr + r +l++ L  +a+ n+f+g s slw+ + + ++l G ++g  ++++  l  ++   ++   +  ++++++ + +   + l  +   + +      ++p+++++ v+++++    l+ ++  +  l   e +r +  +e+ +e +  +l++ + l+
  MMETSP1137-20121227|8919_1 192 LWGVAADRFGRRRVLLLSLSSIAAGNIFFGLSRSLWLALTVrCLLLGALNGWTSVMVL-LCGELGGDRQADVIGYVFSTGQLLNLVGPA-LGGFTYGVGFGPTFPALLPSLLGVGVAMVAFTataLYLPETSKSLLARQESQRRQRaSEHRSEAERGQLEADQMLA 355
                 679*********************************8666515678999999888776.77888888888888889******9999988.8899999999999999**********99998622255566666666666666555546666666666666666655 PP

  == domain 2    score: 0.4 bits;  conditional E-value: 0.053
   TIGR00881  26 glsktdlGlllsaf.siaYgiskfvvgvvsDrvsarvflaigLilvaivnlflgfss.....slwvliallalnGlfqglgwppcgrlltk....wfsrserGtvvaiwnishnvggallpplvllaialllswhvv....fivpgiiaiivsli 166
                  l +++lG++l+a  +    +  + +g    r +ar  l +g + ++i+ +f+  +      s +++++  +l  +  +     +  +l++    + s  + Gtv +++++ + +g  l p  v+  +a+ +s + +    +i +g+    ++l 
  MMETSP1137-20121227|8919_1 437 ALGEEQLGMMLTAAgAGSLLFTSTFIGPCVRRLGARSALVVGSVVAGIAIVFIPLVRapfipSTAAMLLSALLLSINSASILCAASGVLAAsnniLASLPNVGTVQGVLATVEGIGKMLGPAAVAPLLAFCISSRPLeqtsLITSGAFFTFLGLA 591
                 56677888776654233444556677778889999999999999999999888777766777666665555555544433333222222221222677788999999998765555555554444444444444433333355555443333332 PP

>> TIGR01299  synapt_SV2: synaptic vesicle protein SV2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.6   0.1   9.4e-06    0.0097     204     241 ..     175     212 ..     166     218 .. 0.90
   2 !    5.6   0.9    0.0006      0.62     634     739 ..     210     323 ..     209     326 .. 0.81

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 9.4e-06
   TIGR01299 204 kgllglivylgmmvgaflwggladklgrkqsllislsv 241
                  gll + + +g +  a lwg  ad+ gr++ ll+sls 
  MMETSP1137-20121227|8919_1 175 AGLLPTFLIMGRIPTAALWGVAADRFGRRRVLLLSLSS 212
                 588888999999***********************985 PP

  == domain 2    score: 5.6 bits;  conditional E-value: 0.0006
   TIGR01299 634 lsgvscfflsfgtsesamial..lclynglsiaawnaldvltvelypsdkratafgflnalcklaavlgili..ftslvsitkaipillas.....avlvlgsllalklpetrtq 739
                 ls++++  ++fg s s+ +al   cl  g ++  w ++ vl       d++a  +g++ +  +l  ++g ++  ft  v+   + p ll s      ++v  ++ al lpet   
  MMETSP1137-20121227|8919_1 210 LSSIAAGNIFFGLSRSLWLALtvRCLLLG-ALNGWTSVMVLLCGELGGDRQADVIGYVFSTGQLLNLVGPALggFTYGVGFGPTFPALLPSllgvgVAMVAFTATALYLPETSKS 323
                 788999999*******9887622699998.689********99999******************999998765588889999999988877322224566667788999999765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (719 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       160  (0.0390054); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.52u 0.12s 00:00:00.64 Elapsed: 00:00:00.64
# Mc/sec: 1482.82
//
Query:       MMETSP1137-20121227|8920_1  [L=162]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (162 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       129  (0.0314481); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.13s 00:00:00.30 Elapsed: 00:00:00.30
# Mc/sec: 712.74
//
Query:       MMETSP1137-20121227|8921_1  [L=218]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.5e-50  168.2   1.6    3.1e-50  167.9   1.1    1.1  1  TIGR00168 infC: translation initiation factor IF-3


Domain annotation for each model (and alignments):
>> TIGR00168  infC: translation initiation factor IF-3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  167.9   1.1   7.6e-54   3.1e-50       2     164 ..      48     213 ..      47     214 .. 0.95

  Alignments for each domain:
  == domain 1    score: 167.9 bits;  conditional E-value: 7.6e-54
   TIGR00168   2 nekirakevrlide....nGeqlgivsleealkiAeeaglDLvlisanakpPvckildygkykyekekkkkeakKkqkviqvKEvklkpkidehDlevklkqakrflekgdkvKvtvrfrGRelahkelgeevldrvkekvaevaevekaptksegrsmvlllaPkk 164
                 ne+i+++ +r++ +      e lg++s+ eal  Aee++lDLvli+++++pPvcki+ y+k+++ kekkkke++K  k  ++KE+k+++ki ehD++v+ + a +fl +g+kvK+++ f+GRe++h+++g+ v++r+++ ++ v +v+++p ++ g++m++ ++Pkk
  MMETSP1137-20121227|8921_1  48 NEQIQFESMRVVLDvpggADELLGVMSKAEALAAAEERDLDLVLIGPKSDPPVCKIVSYDKFRFLKEKKKKEQQKAVKGQELKELKMSYKIGEHDYDVRKRAAEKFLGQGNKVKFSILFKGREITHADVGKTVMERMAQSLEAVGSVDSPP-RVMGKQMIMTVSPKK 213
                 89********9965321134679********************************************************************************************************************************.999***********8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (218 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       135  (0.0329108); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.19u 0.14s 00:00:00.33 Elapsed: 00:00:00.31
# Mc/sec: 928.18
//
Query:       MMETSP1137-20121227|8922_1  [L=741]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (741 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        57  (0.0138957); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.14s 00:00:00.57 Elapsed: 00:00:00.46
# Mc/sec: 2126.17
//
Query:       MMETSP1137-20121227|8923_1  [L=448]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (448 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        78  (0.0190151); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.15s 00:00:00.44 Elapsed: 00:00:01.04
# Mc/sec: 568.57
//
Query:       MMETSP1137-20121227|8924_1  [L=555]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (555 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       158  (0.0385178); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.17s 00:00:00.57 Elapsed: 00:00:00.41
# Mc/sec: 1786.68
//
Query:       MMETSP1137-20121227|8925_1  [L=196]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (196 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       106  (0.0258411); expected 82.0 (0.02)
Passed bias filter:                      100  (0.0243784); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.18s 00:00:00.40 Elapsed: 00:00:00.40
# Mc/sec: 646.75
//
Query:       MMETSP1137-20121227|8927_1  [L=330]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (330 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        51  (0.012433); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.16s 00:00:00.41 Elapsed: 00:00:00.36
# Mc/sec: 1209.90
//
Query:       MMETSP1137-20121227|8928_1  [L=334]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (334 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        93  (0.0226719); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.12s 00:00:00.37 Elapsed: 00:00:00.38
# Mc/sec: 1160.11
//
Query:       MMETSP1137-20121227|8929_1  [L=248]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (248 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       141  (0.0343735); expected 82.0 (0.02)
Passed bias filter:                      100  (0.0243784); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.15s 00:00:00.36 Elapsed: 00:00:00.43
# Mc/sec: 761.24
//
Query:       MMETSP1137-20121227|8930_1  [L=422]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.7e-11   39.5   0.0    1.3e-10   38.7   0.0    1.3  1  TIGR01140 L_thr_O3P_dcar: threonine-phosphate decarboxylase
    3.8e-05   20.5   0.0    4.9e-05   20.2   0.0    1.1  1  TIGR01141 hisC: histidinol-phosphate transaminase
     0.0001   19.2   0.0    0.00012   19.0   0.0    1.1  1  TIGR01265 tyr_nico_aTase: tyrosine/nicotianamine aminotransferases
    0.00014   18.6   0.0    0.00018   18.3   0.0    1.1  1  TIGR01264 tyr_amTase_E: tyrosine aminotransferase
     0.0003   17.6   0.0    0.00037   17.3   0.0    1.1  1  TIGR03542 DAPAT_plant: LL-diaminopimelate aminotransferase
     0.0028   14.4   0.0     0.0041   13.9   0.0    1.2  1  TIGR03947 viomycin_VioD: capreomycidine synthase


Domain annotation for each model (and alignments):
>> TIGR01140  L_thr_O3P_dcar: threonine-phosphate decarboxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.7   0.0   1.9e-13   1.3e-10      63     221 ..     118     300 ..     109     306 .. 0.82

  Alignments for each domain:
  == domain 1    score: 38.7 bits;  conditional E-value: 1.9e-13
   TIGR01140  63 ldaesvlavnGaqeaiql.lprllapkrv.lvlaptyseyaralraagaevvels.............dleelaaeleeadllvvvnPnNPtGrllekeellalaerlkarggllvvDEAFidftpae.slaalaea.....lpglvVlrSltKffglaGlRlGfv...vAepallerlkeal 221
                 +++ + l + Ga  +i    ++ l++++   +++p+++++a+ ++aag+ev+ +               +e+l+a+ +   +l+ +  +NPtG   ++ + +++a++lk r+  l  D A+  f   + ++ a   +       +  + +S+ K fgl G R+G +   +A+p+ ++r++++l
  MMETSP1137-20121227|8930_1 118 VASVQTLSGTGACRLIGEfYAQHLGKGTPlYLPKPSWGNHAKIFAAAGLEVRYYRywdpktlgldcagMIEDLKAAPDGSAVLLHACAHNPTGVDPTEGQWRDIASALKGRELALFFDSAYQGFASGNaEADAFSIRhfekeGISFALGQSFAKNFGLYGERVGVLsmiCADPDEAQRIESQL 300
                 556778889999999987567778888876899*******************************99998888888889999999999***********************************9988765444433334432234456779**************7422278888888888765 PP

>> TIGR01141  hisC: histidinol-phosphate transaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   0.0   7.2e-08   4.9e-05      70     222 ..     118     283 ..     102     360 .. 0.79

  Alignments for each domain:
  == domain 1    score: 20.2 bits;  conditional E-value: 7.2e-08
   TIGR01141  70 veeenillgnGsdelielliraflepgdavlvleptysmYevsakiagaevkevplked......gqedleavleaakekvklvflasPnnPtGnllkreeiekvleev.e.dalVVvDeAYieFsee......asvlellaeypnlvvlrTlSKafgLAglRvGya 222
                 v   + l g G+  li  +    l +g+  + ++p++  ++ + ++ag ev+ +++ +          + e++++a + ++ l   +  +nPtG   ++ + ++++ +    +     D AY  F++        s   + +e    +  +++ K fgL g RvG++
  MMETSP1137-20121227|8930_1 118 VASVQTLSGTGACRLIGEFYAQHLGKGTPLYLPKPSWGNHAKIFAAAGLEVRYYRYWDPktlgldCAGMIEDLKAAPDGSAVLLHAC-AHNPTGVDPTEGQWRDIASALkGrELALFFDSAYQGFASGnaeadaFSIRHFEKEGISFALGQSFAKNFGLYGERVGVL 283
                 556678899999999*9999********************************99876654655544556667775555555565555.69******************9543455568********996664433333334444478899***************86 PP

>> TIGR01265  tyr_nico_aTase: tyrosine/nicotianamine aminotransferases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.0   1.8e-07   0.00012     119     263 ..     143     295 ..      35     326 .. 0.80

  Alignments for each domain:
  == domain 1    score: 19.0 bits;  conditional E-value: 1.8e-07
   TIGR01265 119 aganiLvPrPgfplYetlakalglevrkydllpekdweidldel.eal..aDektvalvvinPsnPcGsvfsrdHlekvvevaeklklliiaDEvYdklvfgd..atfvplaklaskvPvlslg.giskrwlvPGWrlGWl..ivvdpkgile 263
                 +g  + +P+P++ +   + +a glevr+y     k   +d  ++ e l  a +  ++l+     nP+G   ++   ++++   +  +l ++ D  Y+ ++ g+  a   ++ +++++     lg + +k++   G r+G l  i+ dp +  +
  MMETSP1137-20121227|8930_1 143 KGTPLYLPKPSWGNHAKIFAAAGLEVRYYRYWDPKTLGLDCAGMiEDLkaAPDGSAVLLHACAHNPTGVDPTEGQWRDIASALKGRELALFFDSAYQGFASGNaeADAFSIRHFEKEGISFALGqSFAKNFGLYGERVGVLsmICADPDEAQR 295
                 567788*******************************999876424441145667778888999************************************9984456788999*9998888886489************85226667766543 PP

>> TIGR01264  tyr_amTase_E: tyrosine aminotransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.0   2.7e-07   0.00018      19     273 ..      39     303 ..      25     326 .. 0.72

  Alignments for each domain:
  == domain 1    score: 18.3 bits;  conditional E-value: 2.7e-07
   TIGR01264  19 ivdslkvkPnPekkviklsiGdPtvdg.n...lktseeavkalkesvdsgkynGyaptvGaleareaiaeyyan.kradgeleaddvvlasGcshalelaiealadaGenvlvPrPGfplyetlakaldievklynlladedweidlke.leslid..dktkalivnnPsnPcGsvfsrkhleellalaerlklpiladeiyedlvfkg..atflalaslssevPilslg.GlakrllvPGWrlGWl..iihdrkgvlrdvkdGlkkl 273
                 +v++ k +P+P+k  ++ls G   +d+ +   l++ + a +++  +   ++y G a   G ++   + a         +g +   + +  +G+ + +    +    +G  + +P+P +  +  +  a ++ev++y     + + +d    +e l+   d  ++l+ +   nP+G   ++   +++ +  +  +l ++ d  y+++   +  a   ++ +++ e    +lg   ak++ + G r+G l  i  d  +  + + + lk+l
  MMETSP1137-20121227|8930_1  39 LVEEFKKDPRPQK--VSLSAGTYRTDEgKpwvLPSVKLAEERIVAANLDKEYLGIAGMAGFTSRAREFAMGDDCsAIKEGRVASVQTLSGTGACRLIGEFYAQHLGKGTPLYLPKPSWGNHAKIFAAAGLEVRYYRYWDPKTLGLDCAGmIEDLKAapDGSAVLLHACAHNPTGVDPTEGQWRDIASALKGRELALFFDSAYQGFASGNaeADAFSIRHFEKEGISFALGqSFAKNFGLYGERVGVLsmICAD-PDEAQRIESQLKQL 303
                 5666677777744..456666544433122224555555555555555567777777777665444444333221455666776677777777777777777777899999***********************************87515777743378899999999************************************98773466677889998877776663689**********987423344.44445566666655 PP

>> TIGR03542  DAPAT_plant: LL-diaminopimelate aminotransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.0   5.4e-07   0.00037     178     257 ..     202     282 ..     164     359 .. 0.85

  Alignments for each domain:
  == domain 1    score: 17.3 bits;  conditional E-value: 5.4e-07
   TIGR03542 178 ylCsPnnPtGtvltkeqlkelvdyakendslilfdaayeafisdpslPksiyeiegakecaiei...rsfsktlGftGvrlgy 257
                   C   nPtG   t+ q +++    k ++  ++fd+ay+ f s ++     + i++  +  i +   +sf+k+ G+ G r+g 
  MMETSP1137-20121227|8930_1 202 HAC-AHNPTGVDPTEGQWRDIASALKGRELALFFDSAYQGFASGNA-EADAFSIRHFEKEGISFalgQSFAKNFGLYGERVGV 282
                 444.579**********************************98776.556788988888888885557************985 PP

>> TIGR03947  viomycin_VioD: capreomycidine synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.0     6e-06    0.0041      98     223 ..     149     282 ..     112     311 .. 0.73

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 6e-06
   TIGR03947  98 vvdpayhslselavalgakvrrwplaaer....dfrpdlddlralvtdrtrlvvvnfPhnPtGasvderelsellelaaesgavllWdaafadlvyda.eplpeps.aaadrvisfg...tlskafGlpGlrvGW 223
                 + +p++ + +++ +a+g +vr ++    +    d++  ++dl+a + d +++++    hnPtG+  +e + +++    +  +  l +d+a++ ++  + e+ +       + +isf     ++k fGl G rvG 
  MMETSP1137-20121227|8930_1 149 LPKPSWGNHAKIFAAAGLEVRYYRYWDPKtlglDCAGMIEDLKA-APDGSAVLLHACAHNPTGVDPTEGQWRDIASALKGRELALFFDSAYQGFASGNaEADAFSIrHFEKEGISFAlgqSFAKNFGLYGERVGV 282
                 55666666777777888888777665544111144444555555.3566677777899*********************************999875403333333034567899953348************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (422 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        96  (0.0234032); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.36u 0.10s 00:00:00.46 Elapsed: 00:00:00.53
# Mc/sec: 1050.93
//
Query:       MMETSP1137-20121227|8931_1  [L=82]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (82 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        59  (0.0143832); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.14s 00:00:00.26 Elapsed: 00:00:00.34
# Mc/sec: 318.33
//
Query:       MMETSP1137-20121227|8932_1  [L=349]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (349 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        56  (0.0136519); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.12s 00:00:00.38 Elapsed: 00:00:00.38
# Mc/sec: 1212.22
//
Query:       MMETSP1137-20121227|8933_1  [L=515]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (515 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       105  (0.0255973); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.13s 00:00:00.47 Elapsed: 00:00:00.51
# Mc/sec: 1332.83
//
Query:       MMETSP1137-20121227|8934_1  [L=313]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.2e-13   49.0   0.1    1.4e-13   48.7   0.0    1.1  1  TIGR01628 PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family


Domain annotation for each model (and alignments):
>> TIGR01628  PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.7   0.0   3.3e-17   1.4e-13     439     595 .]      40     204 ..       1     204 [. 0.46

  Alignments for each domain:
  == domain 1    score: 48.7 bits;  conditional E-value: 3.3e-17
   TIGR01628 439 kpeapnalaqlaqqrlqaqgrrnlnnr.nrnvlgnmnkkqqnaaskanqanvkaqpq.aqsknqmqqvvqdnnlpqkqatksn....................nkestltaaalasaspseqkqvLGerLfplveklepelaaKitGmlLEmdnsEllelleseeqLkkkvdEAleVLk 595
                 ++e++  la l+  +++ ++++ +     +n lg +  ++ ++a+ ++ +     p  ++s + + ++                                   ++  +  ++a a++s      + G  L+ ++  l pela+KitGm+LE+d  E+ e l +  +L++ vdEAl+VLk
  MMETSP1137-20121227|8934_1  40 HEESALKLASLPSRQKRVPEEKPMAVEkPSNPLGLHGAAAFQRAAPSPGQLPPPPPRwVKSSSLLASS--------------AprssdintdvdnsrdgdelgQQADSGNSSADATQSETALGYLQGTLLHAKISPLLPELAGKITGMILELDADEIAESLGDTRKLQSLVDEALAVLK 204
                 22223334444333333443333332212222222222222222222222222222233443322222..............02222222233333344453322222222333333333334566899************************************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (313 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        64  (0.0156021); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.28u 0.16s 00:00:00.44 Elapsed: 00:00:00.55
# Mc/sec: 751.14
//
Query:       MMETSP1137-20121227|8935_1  [L=159]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.4e-48  160.8   0.5    4.1e-48  160.5   0.4    1.0  1  TIGR00527 gcvH: glycine cleavage system H protein
    1.7e-23   80.6   0.2    2.2e-23   80.2   0.1    1.1  1  TIGR03077 not_gcvH: glycine cleavage protein H-like protein
  ------ inclusion threshold ------
      0.025   11.0   0.4      0.031   10.6   0.3    1.1  1  TIGR01348 PDHac_trf_long: dihydrolipoyllysine-residue acetyltransferase


Domain annotation for each model (and alignments):
>> TIGR00527  gcvH: glycine cleavage system H protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  160.5   0.4     3e-51   4.1e-48       5     127 ..      37     157 ..      34     159 .] 0.98

  Alignments for each domain:
  == domain 1    score: 160.5 bits;  conditional E-value: 3e-51
   TIGR00527   5 dlryskehewvrvegdktatvGitkfaqdelGdivfvelPevGaevsaeeslgsvesvkaaselyaPvdGtvvevnealedsPelvnedPygegWlikvklsdveeevegllaaeqyeallee 127
                 +l+yskehewv+v+gd  atvGit++aq +lGd+vfv+lPevG++++++  +g+vesvkaas++y+P++G++ evne+l+d+P l+n++  ++gWl k+k+s  ++e++gl++ e ye+  ee
  MMETSP1137-20121227|8935_1  37 ALKYSKEHEWVKVDGD-IATVGITDHAQGQLGDVVFVDLPEVGTTLEQHATMGAVESVKAASDVYSPLSGEITEVNEKLNDEPALINSSAEEDGWLAKIKMSA-TSELDGLMDKEGYEKFCEE 157
                 69**************.*************************************************************************************9.9*************99876 PP

>> TIGR03077  not_gcvH: glycine cleavage protein H-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.2   0.1   1.6e-26   2.2e-23       2     102 ..      40     139 ..      39     146 .. 0.95

  Alignments for each domain:
  == domain 1    score: 80.2 bits;  conditional E-value: 1.6e-26
   TIGR03077   2 ysdyhvwilpihsdvvrlgltermqenlgailhidlpsvgslikegevlvilessksaievlspvsgevievnlalkddiqkinesaeeegwlvvvklded 102
                 ys  h w++ +  d+  +g+t++ q +lg+++ +dlp vg+++ +   +  +es k+a +v sp+sge+ evn++l+d++  in saee+gwl+ +k++  
  MMETSP1137-20121227|8935_1  40 YSKEHEWVK-VDGDIATVGITDHAQGQLGDVVFVDLPEVGTTLEQHATMGAVESVKAASDVYSPLSGEITEVNEKLNDEPALINSSAEEDGWLAKIKMSAT 139
                 788899986.99************************************************************************************99865 PP

>> TIGR01348  PDHac_trf_long: dihydrolipoyllysine-residue acetyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.3   2.3e-05     0.031     169     217 ..      67     116 ..      41     124 .. 0.69

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 2.3e-05
   TIGR01348 169 veviev.lvkvGdtvsadqslitlesdkaslevPapasGvvkslkvkvGd 217
                 ++v+ v l +vG t++++ ++  +es ka+ +v +p sG + +++ k+ d
  MMETSP1137-20121227|8935_1  67 GDVVFVdLPEVGTTLEQHATMGAVESVKAASDVYSPLSGEITEVNEKLND 116
                 44444435577777777777777777777777777777777777766666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (159 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       113  (0.0275475); expected 82.0 (0.02)
Passed bias filter:                      103  (0.0251097); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.17u 0.15s 00:00:00.32 Elapsed: 00:00:00.32
# Mc/sec: 655.82
//
Query:       MMETSP1137-20121227|8936_1  [L=307]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (307 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        58  (0.0141394); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.19s 00:00:00.42 Elapsed: 00:00:00.43
# Mc/sec: 942.34
//
Query:       MMETSP1137-20121227|8937_1  [L=308]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (308 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       104  (0.0253535); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.16s 00:00:00.41 Elapsed: 00:00:00.28
# Mc/sec: 1451.88
//
Query:       MMETSP1137-20121227|8938_1  [L=365]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (365 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        66  (0.0160897); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.15s 00:00:00.42 Elapsed: 00:00:00.38
# Mc/sec: 1267.79
//
Query:       MMETSP1137-20121227|8939_1  [L=391]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (391 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        90  (0.0219405); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.16s 00:00:00.44 Elapsed: 00:00:00.39
# Mc/sec: 1323.28
//
Query:       MMETSP1137-20121227|8940_1  [L=378]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.1e-24   83.8   0.2    2.7e-24   83.4   0.1    1.0  1  TIGR00954 3a01203: peroxysomal long chain fatty acyl transporter
     0.0018   15.4   0.0     0.0033   14.5   0.0    1.3  1  TIGR01115 pufM: photosynthetic reaction center M subunit


Domain annotation for each model (and alignments):
>> TIGR00954  3a01203: peroxysomal long chain fatty acyl transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.4   0.1   1.3e-27   2.7e-24      19     330 ..      57     363 ..      43     377 .. 0.84

  Alignments for each domain:
  == domain 1    score: 83.4 bits;  conditional E-value: 1.3e-27
   TIGR00954  19 dkksseaavllnkviekkkkravdaredesskeelkkesknselekkkkkalvdkeflgklkvllkiliprvfckellllilqa.vlLv.iRtllsvyvakldgqlvksivrrsprsFakellkwlliavpaslvnslikylekelalsfrerltkylyskYlskltfYkvsnldsriknidqsltkDvekFcdsvvelysnlaKPllDlilysfkLltalgsvgaagllalvlllsgvvLrklrpplgkltveeaalegeyrylhsrlisnsEEiAfyqGnkvEkekvkesfekLveklnkvilvrfiydlle 330
                 + ++ +  +  n   + +k+ra+++ ++ ++ +++++ +   + +++ ++ +  ++  ++l+ + ++  p + + e   l + + ++Lv +   +sv    ++     ++ ++++++F    l++  ++  a+ +  + +y   +la+s re +tk + ++Y  ++  Yk+   d +i n+dq + +Dv +F+  + + +  l+   +Dl+ +s  L  ++  +    ++a +  l ++   kl +plgkl +++ ++e+++ry   r+  n E iAfyqG+++E++  ++  ++ +++l++ i ++  +++ +
  MMETSP1137-20121227|8940_1  57 KAHWHARXKAXNSSQTDEKRRAQEKTGSTDVLSSNNMSTTA-TTQGE-ASPQAAGVVAEQLRLFWRLAKPYFTQAEGAKLQAAIlLALVlLNSGVSVLFSYTSRDFWTALSSKNSEQFYELTLRFAAALAVATPITVIYRYQRLQLAISWREWMTKKVCDQYYANQXXYKLXX-DPSIDNPDQRVAEDVRAFTRVSLDFFITLL--TIDLVSFSSILY-SIYPNLFFAIFA-YAGLGSLGTVKLGQPLGKLNAQQLQREADFRYSLVRVRDNAESIAFYQGEAQEQTLSTKRLTDAISNLRELITAQRNLEFFT 363
                 55666677788888899999999999999999988887774.44444.35677788899999999998888888776655443313333145678999999999******************************************************************986.66************************8887..699998887665.455555556666.6777778888999**********************************************************99998888765 PP

>> TIGR01115  pufM: photosynthetic reaction center M subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.0   1.6e-06    0.0033     240     298 ..     107     165 ..      94     171 .. 0.91

  Alignments for each domain:
  == domain 1    score: 14.5 bits;  conditional E-value: 1.6e-06
   TIGR01115 240 drGtaaeraalfWrWtmGfnatiesihrwalwfavlvtltggiGillsgtvvdnwylwa 298
                 + G  ae+  lfWr +  + +++e+ +  a  +  lv l +g+ +l+s t  d w   +
  MMETSP1137-20121227|8940_1 107 AAGVVAEQLRLFWRLAKPYFTQAEGAKLQAAILLALVLLNSGVSVLFSYTSRDFWTALS 165
                 679999***********************************************997765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (378 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       138  (0.0336421); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.31u 0.18s 00:00:00.49 Elapsed: 00:00:00.78
# Mc/sec: 639.64
//
Query:       MMETSP1137-20121227|8941_1  [L=214]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (214 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        45  (0.0109703); expected 82.0 (0.02)
Passed bias filter:                       44  (0.0107265); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.14s 00:00:00.33 Elapsed: 00:00:00.27
# Mc/sec: 1046.14
//
Query:       MMETSP1137-20121227|8942_1  [L=354]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (354 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       108  (0.0263286); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.14s 00:00:00.40 Elapsed: 00:00:00.40
# Mc/sec: 1168.10
//
Query:       MMETSP1137-20121227|8943_1  [L=150]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (150 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       111  (0.02706); expected 82.0 (0.02)
Passed bias filter:                      109  (0.0265724); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.17s 00:00:00.34 Elapsed: 00:00:00.31
# Mc/sec: 638.66
//
Query:       MMETSP1137-20121227|8944_1  [L=223]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.1e-05   23.7   0.0    1.9e-05   23.0   0.0    1.4  1  TIGR02052 MerP: mercuric transport protein periplasmic component
     0.0066   14.5   0.0     0.0099   13.9   0.0    1.3  1  TIGR00003 TIGR00003: copper ion binding protein


Domain annotation for each model (and alignments):
>> TIGR02052  MerP: mercuric transport protein periplasmic component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.0   0.0   9.1e-09   1.9e-05      17      63 ..     117     163 ..     103     189 .. 0.82

  Alignments for each domain:
  == domain 1    score: 23.0 bits;  conditional E-value: 9.1e-09
   TIGR02052  17 palaatktvtlevPgmtcaacPitvktalkkvdGvekaevsfkqkla 63 
                 p  +  +++ l++ gm c ac + v+  l +  Gv   +v+f+   a
  MMETSP1137-20121227|8944_1 117 PSTSNVHSIRLKIDGMGCEACQVHVRSVLDRSAGVVSSDVDFEAGFA 163
                 4555667899********************************98665 PP

>> TIGR00003  TIGR00003: copper ion binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.0   4.8e-06    0.0099       3      65 ..     126     189 ..     124     190 .. 0.91

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 4.8e-06
   TIGR00003   3 tlqVkgmsCnHCVdkiEkfVGeleGVsavkvdlekekvvVeF.dapkvsaeeIkeAildaGyev 65 
                  l+++gm C+ C  ++     +  GV   +vd e++ ++ e  d    + ++Ik+ +   Gyev
  MMETSP1137-20121227|8944_1 126 RLKIDGMGCEACQVHVRSVLDRSAGVVSSDVDFEAGFADLEIaDGWGFNLTAIKQRLRRDGYEV 189
                 6899*************************************8344568999***********98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (223 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       100  (0.0243784); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.20u 0.13s 00:00:00.33 Elapsed: 00:00:00.28
# Mc/sec: 1014.95
//
Query:       MMETSP1137-20121227|8945_1  [L=102]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (102 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       155  (0.0377864); expected 82.0 (0.02)
Passed bias filter:                      118  (0.0287665); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.11s 00:00:00.27 Elapsed: 00:00:00.33
# Mc/sec: 407.97
//
Query:       MMETSP1137-20121227|8946_1  [L=164]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.011   13.4   2.3       0.11   10.2   0.2    2.1  2  TIGR02820 formald_GSH: S-(hydroxymethyl)glutathione synthase


Domain annotation for each model (and alignments):
>> TIGR02820  formald_GSH: S-(hydroxymethyl)glutathione synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.2   2.7e-05      0.11      23      72 ..      12      61 ..       7      67 .. 0.87
   2 ?    2.6   0.0    0.0055        22      37      62 ..      78     103 ..      68     110 .. 0.76

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 2.7e-05
   TIGR02820 23 kckckskkvkvkvkaqsahnhacGcskcwkpegaifsvvavvprdnvevv 72
                +c c s +v v  +aq +   +c c+ c   +ga f    + ++ +v++v
  MMETSP1137-20121227|8946_1 12 TCFCGSLEVIVAPAAQPVSSSICHCANCRSLSGAPFLANVLFAKPDVQLV 61
                7*********************************9987777777777655 PP

  == domain 2    score: 2.6 bits;  conditional E-value: 0.0055
   TIGR02820  37 aqsahnhacGcskcwkpegaifsvva 62 
                 a s h     c+kc+ p  a +    
  MMETSP1137-20121227|8946_1  78 ATSKHVSRVRCAKCYSPMLASLGEAR 103
                 4566777789******9988776555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (164 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        63  (0.0153584); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.17u 0.15s 00:00:00.32 Elapsed: 00:00:00.73
# Mc/sec: 296.52
//
Query:       MMETSP1137-20121227|8947_1  [L=553]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (553 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        84  (0.0204778); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.14s 00:00:00.50 Elapsed: 00:00:00.69
# Mc/sec: 1057.83
//
Query:       MMETSP1137-20121227|8948_1  [L=209]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (209 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       336  (0.0819113); expected 82.0 (0.02)
Passed bias filter:                      125  (0.0304729); expected 82.0 (0.02)
Passed Vit filter:                        23  (0.00560702); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.16s 00:00:00.37 Elapsed: 00:00:00.37
# Mc/sec: 745.56
//
Query:       MMETSP1137-20121227|8949_1  [L=275]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (275 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       129  (0.0314481); expected 82.0 (0.02)
Passed bias filter:                      100  (0.0243784); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.13s 00:00:00.36 Elapsed: 00:00:00.38
# Mc/sec: 955.18
//
Query:       MMETSP1137-20121227|8950_1  [L=470]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     7e-183  605.5   0.1   8.1e-183  605.3   0.1    1.0  1  TIGR01959 nuoF_fam: NADH oxidoreductase (quinone), F subunit
    2.3e-12   44.0   0.0    5.6e-12   42.7   0.0    1.6  2  TIGR01945 rnfC: electron transport complex, RnfABCDGE type, C subunit


Domain annotation for each model (and alignments):
>> TIGR01959  nuoF_fam: NADH oxidoreductase (quinone), F subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  605.3   0.1  3.9e-186  8.1e-183       2     410 .]      51     460 ..      50     460 .. 0.99

  Alignments for each domain:
  == domain 1    score: 605.3 bits;  conditional E-value: 3.9e-186
   TIGR01959   2 llkkleekesvtleeyekkggykalkkaleelspddiieevkesglrGrGGaGfptGlkWsfipkde.akpkylvvnadesePgtfkdrdlleaePhklieGliiaayalkakkgyiyirGefvkeakaleaaideayaagllGknilgsgfdlelvvheGaGayiCGeetallesleGkkgqPrlkPPfPavvGlygkPtvvnnvetlasvPailrkGaewykklgkeksaGtklfslsGkvkkpglyelplgitlkelledyagGvrdgkk.lkaviPGGssvpvltaeevldvemdydslakagsrlGtaavivldesvdivklvarlsefykkesCGqCtPCreGtgWlvkilerleegegkkedidkleslskelegktiCalgdaavepvqsaikkfrdefeaki 410
                 ++++l+ + s+ l+ ++k+g++ ++k++++ l p++ii+ +k+sglrGrGGaGfp+GlkWs +pk++ + p+ylvvnadesePgt+kdr++++++PhklieG+++a+ +++a+++yiyirGefv ea  le+ai+eay+agl+Gkn +g+g+d+++++h+G GayiCGeet l+esleGk g+PrlkPPfPa++Glyg+Pt+v nvet+++ P+i+r+G ew++ +g+++++Gtklf++sG+v++p ++e++++i+lkel+++++  v +g++ l ++iPGGssvpvlt+e++++v m +d l +a s+lGtaav v+++++divk++arls+fy++esCGqCtPCreGtgW++ki++rl++g+++ ++id+le+ls ++eg+tiCalgdaa++pvq++i+ fr e+e +i
  MMETSP1137-20121227|8950_1  51 IFTNLYCDGSQFLDGAKKRGDWYKTKEIVQ-LGPERIIADIKASGLRGRGGAGFPSGLKWSXMPKNNkTSPQYLVVNADESEPGTCKDREIMRHDPHKLIEGCLVAGVSMRANAAYIYIRGEFVYEAVVLERAIKEAYDAGLIGKNACGTGIDFDVYLHRGGGAYICGEETGLIESLEGKPGKPRLKPPFPANAGLYGCPTTVANVETVSVAPTIMRRGPEWFAGFGRKNNSGTKLFCISGHVNNPITVEEEMSIPLKELIQKHCKDVVGGWDnLLGIIPGGSSVPVLTKEQCETVLMXFDDLXNARSGLGTAAVTVFNKQTDIVKAIARLSKFYEHESCGQCTPCREGTGWMRKIMDRLVTGDAEIKEIDMLEELSMQIEGHTICALGDAAAWPVQGLIRAFRPEIEMRI 460
                 67899999999****************995.6*********************************99899**********************************************************************************************************************************************************************************************************99*************************************************************************************************************************************9886 PP

>> TIGR01945  rnfC: electron transport complex, RnfABCDGE type, C subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.7   0.0   2.7e-15   5.6e-12     108     204 ..      70     169 ..      62     188 .. 0.83
   2 ?   -3.7   0.0      0.34     7e+02      26      51 ..     297     322 ..     294     326 .. 0.81

  Alignments for each domain:
  == domain 1    score: 42.7 bits;  conditional E-value: 2.7e-15
   TIGR01945 108 ielealkkeeklskeeilekikaaGivGlGGAtFPthvklnskpekkv...elliingaeCePyltaDdrlmreraeeileGikillkilkvkkvvigie 204
                  +  ++k+  +l +e i++ ika G+ G GGA FP+  k +  p+++    ++l++n+ e eP    D  +mr  +++++eG  +    ++ + ++i i 
  MMETSP1137-20121227|8950_1  70 GDWYKTKEIVQLGPERIIADIKASGLRGRGGAGFPSGLKWSXMPKNNKtspQYLVVNADESEPGTCKDREIMRHDPHKLIEGCLVAGVSMRANAAYIYIR 169
                 4555567778999**************************99766544312379*****************************999988888888888775 PP

  == domain 2    score: -3.7 bits;  conditional E-value: 0.34
   TIGR01945  26 plpkelvvplkqhiGapaepivkvgd 51 
                  +++e+ +plk+ i ++++ +v   d
  MMETSP1137-20121227|8950_1 297 TVEEEMSIPLKELIQKHCKDVVGGWD 322
                 56789999****99999999997655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (470 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        86  (0.0209654); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.34u 0.13s 00:00:00.47 Elapsed: 00:00:00.47
# Mc/sec: 1319.89
//
Query:       MMETSP1137-20121227|8951_1  [L=131]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (131 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        99  (0.0241346); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.14s 00:00:00.29 Elapsed: 00:00:00.34
# Mc/sec: 508.55
//
Query:       MMETSP1137-20121227|8952_1  [L=637]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (637 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        82  (0.0199902); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.20s 00:00:00.58 Elapsed: 00:00:00.56
# Mc/sec: 1501.38
//
Query:       MMETSP1137-20121227|8953_1  [L=355]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.2e-13   46.8   0.0    2.8e-13   46.4   0.0    1.0  1  TIGR03903 TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
      2e-05   22.0   0.0      3e-05   21.4   0.0    1.2  1  TIGR03724 arch_bud32: Kae1-associated kinase Bud32


Domain annotation for each model (and alignments):
>> TIGR03903  TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.4   0.0   1.4e-16   2.8e-13      16     165 ..      48     195 ..      37     216 .. 0.81

  Alignments for each domain:
  == domain 1    score: 46.4 bits;  conditional E-value: 1.4e-16
   TIGR03903  16 aeeerlvaRFrReialCarL.shPnivaLlDsGeaedgllFavFeyveGrtlrevLaadGaLpaaetgrLmlqvLDalaaahdaGvvhRDLkPqnimvsaadveshakvLDFGigaLlpgvedadeatltrttevlGsPaYaaPeqLRgep 165
                  ++e  +a  r+e+al +   +h ni+++    e ++ l +   e+  G  l ++L   G+L+             ala+ hd+GvvhRD+k +n m+ a d +   k+LDFG++  +p  e     +  +  + +Gs +Y aPe     +
  MMETSP1137-20121227|8953_1  48 CNDESTRALVRKEVALMELCgTHENIIQMRGFLEVNN-LAWXFLELATGGELFDRLIDSGSLSERAARPYAKGLASALAHCHDKGVVHRDVKLENAMLCAHDAH-ALKLLDFGLAVQVPLSER-GGFEEEKFFDGVGSRSYKAPEMWSASA 195
                 36888999999**999876548******977777766.889999*******************9999989899999***********************99875.569******999887666.555666777889999999999766555 PP

>> TIGR03724  arch_bud32: Kae1-associated kinase Bud32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   0.0   1.5e-08     3e-05      94     169 ..     115     192 ..      96     199 .. 0.79

  Alignments for each domain:
  == domain 1    score: 21.4 bits;  conditional E-value: 1.5e-08
   TIGR03724  94 ellkevGelvgklHkagivhgDlttsNiiv...kddklyliDfGLgkkskevedkavDlhvlkrslestheelaeelie 169
                  ++k ++ +++++H++g+vh D+  +N ++   +++ l l+DfGL+ +    e  + +   +++ + s +++ a e+++
  MMETSP1137-20121227|8953_1 115 PYAKGLASALAHCHDKGVVHRDVKLENAMLcahDAHALKLLDFGLAVQVPLSERGGFEEEKFFDGVGSRSYK-APEMWS 192
                 6889999********************999543366788*******99888888888888888887777777.555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (355 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        49  (0.0119454); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.17u 0.23s 00:00:00.40 Elapsed: 00:00:00.43
# Mc/sec: 1089.68
//
Query:       MMETSP1137-20121227|8955_1  [L=711]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.5e-85  285.5  26.8    3.2e-85  284.4  18.6    1.5  1  TIGR00801 ncs2: uracil-xanthine permease
    9.9e-56  187.0  28.1    4.4e-36  122.3   3.1    4.2  3  TIGR03173 pbuX: xanthine permease
    2.2e-12   44.3  18.3    1.6e-09   34.8   2.6    3.2  2  TIGR03616 RutG: pyrimidine utilization transport protein G


Domain annotation for each model (and alignments):
>> TIGR00801  ncs2: uracil-xanthine permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  284.4  18.6   2.3e-88   3.2e-85       3     392 ..      71     554 ..      69     570 .. 0.91

  Alignments for each domain:
  == domain 1    score: 284.4 bits;  conditional E-value: 2.3e-88
   TIGR00801   3 pllqtlvlglqhllamfaavvlvp.llvgaal.lsae.......elqylvsisLlvsGigtllqllrtkvv.......iglpsvlgssfafvt.....pviaissg.................lgveaalgaliatglvvallellikklgsrllkklfpPvVtGpvvmlIGlsLipvavkdaaggeaaassn.......................efgslenlllallvlaliillerfakgllksisvliGlvvGyilalalg.................................lvdfssvkeapwfslpklltfglsfeleailtllavaivvlvesiGdltaladvsrrelsg...dkrlkrgvladGlatllaglvgstPvttfaqniGvialTrvasrlvivvaavilvvlGlvpkiaalisaIPsaVlGGaslllFgvvaasGirilirakldlrrnrliiaaSvalglgvtlvpdif 392
                 pll +l++g qh lam+a++ +   ll++ +  ++ +       +++y+vs + ++sGi+t +q++r k++       +gl+sv+g+sf+f       +v+ is++                    ++ +g +++t +v+alle++i++l+++ +kklfpPvVtG+ vmlIG +Li+ ++k ++gg   + +n                        fg++++++l++ vla+ ++++ f++++lks  +  +l++G++++++                                   + d +++k a ++++ + +tf+l f  e +l++l++++v+++e++Gd+   +  s+ +  g   d+r+++g+ladGl++++a l++s+P+ttf+qn+G+i+lTr+asr +++ +a++l+++G+++ki++++ +IP  V+GG+ l+ F++v ++G+++ +++ l+ rrn +i+++S+++glgv+  p+ f
  MMETSP1137-20121227|8955_1  71 PLLLSLIMGFQHCLAMLAGIATSGgLLIAGDAcFAWQydsemcsAQAYMVSAAWITSGILTCVQVFRAKIRgtryylgTGLISVMGTSFTFLPiardmVVSSISDAkqegkctvnsvgiidcaGYGKEGYGRFLGTCIVAALLEVGISFLSPKTMKKLFPPVVTGASVMLIGGGLISSGIKYIGGGV-FCAENqasreaafgsgpqlctengevvlAFGAPQYVGLGFSVLAMAVVIQFFGSPFLKSTFIFWALMFGCFVSALTKyeagegdkttcdaepdlpcigglanavpgkdyvYWDNAGIKSADAITFLWTTTFPLGFAPEYFLPVLIAYFVSAAETVGDIACSCVASQVPAMGqdfDSRVQGGLLADGLNSMIACLFTSPPNTTFSQNNGIISLTRCASRSAGFSCAFWLILFGVFGKIGGAFISIPICVVGGMVLMCFSMVFIAGMKLACTN-LT-RRNSFILMLSIGIGLGVAMEPQLF 554
                 6678899************9997537777777654321122333689**********************99999*****************88767663333333377889999999998884334679*********************************************************9.555556999****************************************************************99999999***************************9999*************************************************99999998888999*******************************************************************************************99986.66.7******************99988 PP

>> TIGR03173  pbuX: xanthine permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.0   6.0   2.2e-19     3e-16       1     146 [.      78     265 ..      78     278 .. 0.77
   2 !   15.4   0.4   9.7e-07    0.0013     138     190 ..     281     333 ..     275     337 .. 0.91
   3 !  122.3   3.1   3.2e-39   4.4e-36     196     377 ..     372     554 ..     358     558 .. 0.90

  Alignments for each domain:
  == domain 1    score: 57.0 bits;  conditional E-value: 2.2e-19
   TIGR03173   1 lglqHvlamyagavav.plivagal....glske...elayLisadllvaGiatliQllgvg......kvGirLpvvqGvsfaavapmiaiga..........................kkglsaifGavivaglvvlllapffsk.lvklfppvVtGtvilliGlsLlpvainsaagge.gakefgs 146
                 +g+qH lam+ag+ +   l++ag +    + ++e     ay++sa+ +++Gi t++Q+++ +      ++G++L+ v+G+sf+++ ++  ++                           k+g++  +G+ iva+l+++ ++++  k ++klfppvVtG  ++liG  L+  +i++++gg   a++ +s
  MMETSP1137-20121227|8955_1  78 MGFQHCLAMLAGIATSgGLLIAGDAcfawQYDSEmcsAQAYMVSAAWITSGILTCVQVFRAKirgtryYLGTGLISVMGTSFTFLPIARDMVVssisdakqegkctvnsvgiidcagygKEGYGRFLGTCIVAALLEVGISFLSPKtMKKLFPPVVTGASVMLIGGGLISSGIKYIGGGVfCAENQAS 265
                 69**********9997358888754122244544222468******************987633333369999***********98765554444667876666666666666655555555*******************998552889*****************************975555554 PP

  == domain 2    score: 15.4 bits;  conditional E-value: 9.7e-07
   TIGR03173 138 gegakefgslknlllallvlvvilllsrfakgflksiavllglvvGtvvAlll 190
                 ge   +fg ++ ++l++ vl++ ++++ f++ flks+ +  +l++G+ v++l+
  MMETSP1137-20121227|8955_1 281 GEVVLAFGAPQYVGLGFSVLAMAVVIQFFGSPFLKSTFIFWALMFGCFVSALT 333
                 556678*****************************************998875 PP

  == domain 3    score: 122.3 bits;  conditional E-value: 3.2e-39
   TIGR03173 196 skvaeaallalpkplkfglptfdlaailslllvalvslveatGdllAlseivgkkiee....kelarglradglasllgglfnsfpltsfsqNvGlvqltgvksrkvvaaagviLvllGllPklaalvasiPapVlGGaalvmfgmvaaaGirilskvdfkerknllivavslglglgvtlvpell 377
                  ++++a+ +++    +f l  f  + +l++l+ ++vs+ e++Gd+      ++ ++      +++++gl+adgl+s+++ lf+s p+t+fsqN+G+++lt+ +sr +   ++ +L+l+G++ k++  + siP  V+GG++l+ f+mv +aG++ l+ +++++r n +i+ +s+g+glgv ++p+l+
  MMETSP1137-20121227|8955_1 372 AGIKSADAITFLWTTTFPL-GFAPEYFLPVLIAYFVSAAETVGDIACSCVASQVPAMGqdfdSRVQGGLLADGLNSMIACLFTSPPNTTFSQNNGIISLTRCASRSAGFSCAFWLILFGVFGKIGGAFISIPICVVGGMVLMCFSMVFIAGMK-LACTNLTRR-NSFILMLSIGIGLGVAMEPQLF 554
                 5678888888888888877.99**********************765444444444333444899***************************************************************************************9.788999999.*******************987 PP

>> TIGR03616  RutG: pyrimidine utilization transport protein G
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.2   4.6   0.00014      0.19     116     171 ..     207     258 ..      53     262 .. 0.75
   2 !   34.8   2.6   1.2e-12   1.6e-09     273     395 ..     426     546 ..     392     564 .. 0.83

  Alignments for each domain:
  == domain 1    score: 8.2 bits;  conditional E-value: 0.00014
   TIGR03616 116 iiacglvyaviglvvmkvgtrwierlmppvvtgavvmaiglnlapiavksvsasaf 171
                  i+  l+ +     +  +  + +++l+ppvvtga vm+ig  l    +k + +  f
  MMETSP1137-20121227|8955_1 207 CIVAALLEVG----ISFLSPKTMKKLFPPVVTGASVMLIGGGLISSGIKYIGGGVF 258
                 3333333222....2223445689****************9999999988877655 PP

  == domain 2    score: 34.8 bits;  conditional E-value: 1.2e-12
   TIGR03616 273 mtgrnldpylgrafvgdglatmlsgsvggtgvttyaenigvmavtkvystlvfvaaavvaillglspkfgalihtipaavlggasivvfgliavagariwvqnkvdlsqngnlilvavtlvlg 395
                   g+++d  +  ++++dgl +m+++       tt+++n g++++t+  s     ++a   il+g+  k+g    +ip +v+gg  ++ f ++ +ag ++   n      n+ +++ ++ + lg
  MMETSP1137-20121227|8955_1 426 AMGQDFDSRVQGGLLADGLNSMIACLFTSPPNTTFSQNNGIISLTRCASRSAGFSCAFWLILFGVFGKIGGAFISIPICVVGGMVLMCFSMVFIAGMKLACTNLT--RRNSFILMLSIGIGLG 546
                 3599************************************************999***************9999************************9887743..4566666766666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (711 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       104  (0.0253535); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.54u 0.15s 00:00:00.69 Elapsed: 00:00:00.63
# Mc/sec: 1489.59
//
Query:       MMETSP1137-20121227|8956_1  [L=330]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (330 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       109  (0.0265724); expected 82.0 (0.02)
Passed bias filter:                      103  (0.0251097); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.11s 00:00:00.38 Elapsed: 00:00:00.57
# Mc/sec: 750.97
//
Query:       MMETSP1137-20121227|8957_1  [L=217]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.6e-11   39.8   0.0    2.6e-08   31.8   0.0    2.2  2  TIGR02072 BioC: biotin biosynthesis protein BioC
    1.2e-10   38.9   0.0    3.2e-07   27.7   0.0    2.1  2  TIGR01934 MenG_MenH_UbiE: ubiquinone/menaquinone biosynthesis methyltransferase
    2.3e-06   25.0   0.0    4.9e-06   23.9   0.0    1.4  2  TIGR02021 BchM-ChlM: magnesium protoporphyrin O-methyltransferase
    2.2e-05   21.7   0.0    3.4e-05   21.1   0.0    1.2  1  TIGR01983 UbiG: 3-demethylubiquinone-9 3-O-methyltransferase
    0.00043   17.9   0.0    0.00059   17.4   0.0    1.2  1  TIGR00537 hemK_rel_arch: putative methylase
     0.0073   14.0   0.0       0.01   13.5   0.0    1.2  1  TIGR00080 pimt: protein-L-isoaspartate O-methyltransferase
     0.0085   14.2   0.0      0.023   12.8   0.0    1.8  1  TIGR02469 CbiT: precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit


Domain annotation for each model (and alignments):
>> TIGR02072  BioC: biotin biosynthesis protein BioC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.8   0.0   4.4e-11   2.6e-08      37     102 ..       9      76 ..       4      85 .. 0.94
   2 !    5.8   0.0    0.0039       2.3     109     131 ..     101     123 ..      96     131 .. 0.91

  Alignments for each domain:
  == domain 1    score: 31.8 bits;  conditional E-value: 4.4e-11
   TIGR02072  37 kvLdiGcGtGiltrallkrfpqaelialDiseemleqakkkls....nvqficgdieklplekksfDliv 102
                 +vLd+G+GtG ltr ++  ++ +  +alD +e ml++a++ l+     v f  +di++lp +   fDl+ 
  MMETSP1137-20121227|8957_1   9 AVLDLGAGTGKLTRLVAPLVSYV--LALDRAELMLRTAERSLQvsksLVGFAVADIRNLPCRSGVFDLVL 76 
                 79******************999..****************999999899******************96 PP

  == domain 2    score: 5.8 bits;  conditional E-value: 0.0039
   TIGR02072 109 WlddlsevlaelarvlkpgGlla 131
                 W  +l+++lae+ r+lkpgG+++
  MMETSP1137-20121227|8957_1 101 WRAELDSALAEVDRALKPGGVAI 123
                 999*****************986 PP

>> TIGR01934  MenG_MenH_UbiE: ubiquinone/menaquinone biosynthesis methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.7   0.0   5.5e-10   3.2e-07      39     116 ..       6      81 ..       1      88 [. 0.88
   2 !    9.2   0.0   0.00024      0.14     121     150 ..     104     133 ..     102     146 .. 0.81

  Alignments for each domain:
  == domain 1    score: 27.7 bits;  conditional E-value: 5.5e-10
   TIGR01934  39 keekvlDvatGtGdlaielakkaeakvtgvDlseemLevakkkakekeeanvefieadaeeLpfednsfdavtiafGl 116
                 ++  vlD+ +GtG+l+  +a  +   v+++D +e mL++a++ ++  +++ v f +ad  +Lp ++ +fd+v +++ l
  MMETSP1137-20121227|8957_1   6 RGMAVLDLGAGTGKLTRLVAPLV-SYVLALDRAELMLRTAERSLQ-VSKSLVGFAVADIRNLPCRSGVFDLVLVGWTL 81 
                 56789***********8888877.78**************99986.55678*********************998865 PP

  == domain 2    score: 9.2 bits;  conditional E-value: 0.00024
   TIGR01934 121 diekaLkelaRVlkpggrlvilefskpkna 150
                 + + aL e+ R lkpgg  +i e + ++++
  MMETSP1137-20121227|8957_1 104 ELDSALAEVDRALKPGGVAIIFESQGTASS 133
                 5689*******************9887764 PP

>> TIGR02021  BchM-ChlM: magnesium protoporphyrin O-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.9   0.0   8.3e-09   4.9e-06      54     123 ..       6      76 ..       2      81 .. 0.90
   2 ?   -3.6   0.0       2.2   1.3e+03     124     144 ..     168     188 ..     165     194 .. 0.52

  Alignments for each domain:
  == domain 1    score: 23.9 bits;  conditional E-value: 8.3e-09
   TIGR02021  54 kGkkvlDAGCGtGllsielAkrGaivkavDiseklvelarkraekedeaenveFevndlesle...gkfDavv 123
                 +G+ vlD G GtG l+  +A     v a D +e ++ +a++ ++ ++    v F+v d+++l    g fD v+
  MMETSP1137-20121227|8957_1   6 RGMAVLDLGAGTGKLTRLVAPLVSYVLALDRAELMLRTAERSLQVSK--SLVGFAVADIRNLPcrsGVFDLVL 76 
                 6999*************************************999988..48********99743459999986 PP

  == domain 2    score: -3.6 bits;  conditional E-value: 2.2
   TIGR02021 124 alDvlihYpaediakalerla 144
                 al++l+h+  ++++k  + ++
  MMETSP1137-20121227|8957_1 168 ALETLLHFFGKGASKRAAAIL 188
                 555555555555544444443 PP

>> TIGR01983  UbiG: 3-demethylubiquinone-9 3-O-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1   0.0   5.9e-08   3.4e-05      50     122 ..       7      77 ..       3      82 .. 0.94

  Alignments for each domain:
  == domain 1    score: 21.1 bits;  conditional E-value: 5.9e-08
   TIGR01983  50 glkvlDvGcGgGllseslarlgaevtgiDlseelievAklhakkdplkkieyelksveelaeeekesfDvvla 122
                 g+ vlD+G+G G l+  +a l   v ++D +e ++++A+ + + ++ + + + ++++ +l  + +  fD+vl+
  MMETSP1137-20121227|8957_1   7 GMAVLDLGAGTGKLTRLVAPLVSYVLALDRAELMLRTAERSLQVSKSL-VGFAVADIRNLPCR-SGVFDLVLV 77 
                 789*******************************************98.***********888.788**9985 PP

>> TIGR00537  hemK_rel_arch: putative methylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.0     1e-06   0.00059      21     144 ..       8     130 ..       4     165 .. 0.85

  Alignments for each domain:
  == domain 1    score: 17.4 bits;  conditional E-value: 1e-06
   TIGR00537  21 ddvleiGaGtGlvairlkekgkkivatdinPfavkllkenaklnnveldvlesdlfe.nveg.kfdvilfnpPyleleedekrgdyldlaidGGkdGrkvidrfldelpeilkegGrvqlvqssls 144
                   vl++GaGtG ++  ++   + ++a d +    +++++  ++ +  + +  +d+ + + +   fd++l       l+   + +++ +    GG   r  +d  l e++  lk+gG++++ +s  +
  MMETSP1137-20121227|8957_1   8 MAVLDLGAGTGKLTRLVAPLVSYVLALDRAELMLRTAERSLQVSKSLVGFAVADIRNlPCRSgVFDLVLVGWTLSSLK--SEFEEWYEDGSAGGT-WRAELDSALAEVDRALKPGGVAIIFESQGT 130
                 569*****************************************9999*******874555459*****986655554..557889988888886.57779*******************988654 PP

>> TIGR00080  pimt: protein-L-isoaspartate O-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   0.0   1.7e-05      0.01      75     123 ..       4      49 ..       1      65 [. 0.91

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 1.7e-05
   TIGR00080  75 lkagakvLeiGtGsGYqaavlaelvgrdglvvsierieeLvekaerrlk 123
                 l+ g+ vL++G+G+G ++ ++a lv     v++++r e +   aer l+
  MMETSP1137-20121227|8957_1   4 LNRGMAVLDLGAGTGKLTRLVAPLVSY---VLALDRAELMLRTAERSLQ 49 
                 78899*********************9...***************9986 PP

>> TIGR02469  CbiT: precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.8   0.0   3.9e-05     0.023      17      64 ..       4      49 ..       2     126 .. 0.87

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 3.9e-05
   TIGR02469 17 lkkgdvllDiGaGtGsvtieaarlvpkgrvyaierneealelieeNlr 64
                l++g+ +lD GaGtG +t  +a lv    v+a++r e  l++ e+ l+
  MMETSP1137-20121227|8957_1  4 LNRGMAVLDLGAGTGKLTRLVAPLVSY--VLALDRAELMLRTAERSLQ 49
                567899************888888876..99****9999988887665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (217 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        69  (0.0168211); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.21u 0.14s 00:00:00.35 Elapsed: 00:00:00.33
# Mc/sec: 867.93
//
Query:       MMETSP1137-20121227|8958_1  [L=364]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (364 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       111  (0.02706); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.16s 00:00:00.46 Elapsed: 00:00:00.46
# Mc/sec: 1044.44
//
Query:       MMETSP1137-20121227|8959_1  [L=459]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (459 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       107  (0.0260848); expected 82.0 (0.02)
Passed bias filter:                      102  (0.0248659); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.17s 00:00:00.50 Elapsed: 00:00:00.41
# Mc/sec: 1477.63
//
Query:       MMETSP1137-20121227|8960_1  [L=294]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (294 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        50  (0.0121892); expected 82.0 (0.02)
Passed bias filter:                       35  (0.00853242); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.14s 00:00:00.37 Elapsed: 00:00:00.54
# Mc/sec: 718.61
//
Query:       MMETSP1137-20121227|8961_1  [L=252]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (252 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       116  (0.0282789); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.13s 00:00:00.34 Elapsed: 00:00:00.41
# Mc/sec: 811.25
//
Query:       MMETSP1137-20121227|8962_1  [L=247]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (247 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       165  (0.0402243); expected 82.0 (0.02)
Passed bias filter:                      112  (0.0273038); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.17s 00:00:00.39 Elapsed: 00:00:00.45
# Mc/sec: 724.47
//
Query:       MMETSP1137-20121227|8964_1  [L=314]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.029   12.1   0.1      0.085   10.5   0.0    1.8  2  TIGR00249 sixA: phosphohistidine phosphatase SixA


Domain annotation for each model (and alignments):
>> TIGR00249  sixA: phosphohistidine phosphatase SixA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.1      0.21   8.8e+02       3      20 ..      84     101 ..      83     107 .. 0.83
   2 ?   10.5   0.0   2.1e-05     0.085      22      61 ..     139     179 ..     119     192 .. 0.80

  Alignments for each domain:
  == domain 1    score: -2.5 bits;  conditional E-value: 0.21
   TIGR00249   3 lylmrHGeAkekaasDke 20 
                 l+l+rH +   +aa D++
  MMETSP1137-20121227|8964_1  84 LHLLRHAQGTHNAAEDNA 101
                 789999999999998876 PP

  == domain 2    score: 10.5 bits;  conditional E-value: 2.1e-05
   TIGR00249  22 qLtkkGkdeaervaqwLk.kagveldrilvSplvRAeqtae 61 
                 +Lt  G ++a r  + L  + g  +d ++vSp++R  qta 
  MMETSP1137-20121227|8964_1 139 PLTPLGREQAARRHDELTrRDGFAIDVVVVSPFRRTLQTAY 179
                 7999999999888877761567*****************85 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (314 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        86  (0.0209654); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.24u 0.17s 00:00:00.41 Elapsed: 00:00:00.36
# Mc/sec: 1151.24
//
Query:       MMETSP1137-20121227|8965_1  [L=635]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.012   12.8   0.0      0.034   11.3   0.0    1.7  1  TIGR02852 spore_dpaB: dipicolinic acid synthetase, B subunit


Domain annotation for each model (and alignments):
>> TIGR02852  spore_dpaB: dipicolinic acid synthetase, B subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   8.2e-06     0.034      19      69 ..     197     247 ..     189     258 .. 0.83

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 8.2e-06
   TIGR02852  19 pkleklveegaevvpivsetvkttetrfGegadwikkieeitgkkaiktiv 69 
                 + +e l+  g + +    ++v tt+ rf +++d +k++e +t +++  ++ 
  MMETSP1137-20121227|8965_1 197 GDVESLIVLGKDRKKRSRYSVLTTNHRFDKNKDEVKRVEAVTETRVRPALN 247
                 678999999999999999************************988766654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (635 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        98  (0.0238908); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.17s 00:00:00.57 Elapsed: 00:00:00.69
# Mc/sec: 1214.68
//
Query:       MMETSP1137-20121227|8966_1  [L=74]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        9.9    3.8   9.2         13    3.5   6.4    1.3  1  TIGR04061 AZL_007950_fam: AZL_007950 family protein


Domain annotation for each model (and alignments):
>> TIGR04061  AZL_007950_fam: AZL_007950 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   6.4    0.0031        13      99     142 ..      18      62 ..       3      72 .. 0.56

  Alignments for each domain:
  == domain 1    score: 3.5 bits;  conditional E-value: 0.0031
   TIGR04061  99 DrseargivLasqgaaeavvdwkksiragae.vveeeeelPapew 142
                  +++ + +++ +q++++++++ +++ r++++ ++++++ +P+ ++
  MMETSP1137-20121227|8966_1  18 QQQQQMMMMMQQQQQQQIMQQQQQQQRQQQQqQQQQQQMMPQQQQ 62 
                 333334444444445555555555555544404455777887654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (74 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                      1641  (0.400049); expected 82.0 (0.02)
Passed bias filter:                      737  (0.179668); expected 82.0 (0.02)
Passed Vit filter:                       212  (0.0516821); expected 4.1 (0.001)
Passed Fwd filter:                        51  (0.012433); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.28s 00:00:00.74 Elapsed: 00:00:00.76
# Mc/sec: 128.52
//
Query:       MMETSP1137-20121227|8967_1  [L=215]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.9e-10   36.6   0.1    5.9e-10   36.6   0.0    1.4  2  TIGR01622 SF-CC1: splicing factor, CC1-like family
    3.1e-09   34.3   0.0    3.9e-09   34.0   0.0    1.1  1  TIGR01628 PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family
    3.1e-08   30.4   0.0    4.7e-08   29.8   0.0    1.2  1  TIGR01642 U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor
    2.4e-07   28.5   0.0    3.1e-07   28.2   0.0    1.3  1  TIGR01659 sex-lethal: sex-lethal family splicing factor
    5.5e-06   24.0   0.0    7.5e-06   23.6   0.0    1.1  1  TIGR01661 ELAV_HUD_SF: ELAV/HuD family splicing factor
     0.0043   13.7   0.0     0.0059   13.3   0.0    1.2  1  TIGR01648 hnRNP-R-Q: hnRNP-R, Q splicing factor family
  ------ inclusion threshold ------
      0.027   11.3   0.0      0.037   10.8   0.0    1.1  1  TIGR01649 hnRNP-L_PTB: hnRNP-L/PTB/hephaestus splicing factor family
      0.042   10.4   0.0      0.052   10.1   0.0    1.1  1  TIGR01645 half-pint: poly-U binding splicing factor, half-pint family


Domain annotation for each model (and alignments):
>> TIGR01622  SF-CC1: splicing factor, CC1-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.6   0.0   1.1e-12   5.9e-10     219     296 ..      33     110 ..      19     151 .. 0.88
   2 ?   -5.8   2.3         8   4.1e+03      57      98 ..     173     194 ..     156     214 .. 0.33

  Alignments for each domain:
  == domain 1    score: 36.6 bits;  conditional E-value: 1.1e-12
   TIGR01622 219 dlkLYvGnlhfnitEqeLrqiFepFGeielvqlqkDpetGrskGyGFiqFsdaeeakeAleklNGlelAGReikvgla 296
                  + LYvGnl f  tE++L ++F   G+++ + + +D  +    G+ F+++   + + +A+  + Gl l  R i+v   
  MMETSP1137-20121227|8967_1  33 STTLYVGNLSFYTTEEQLYELFGRCGDVKRIVMGLDRFAKTPCGFCFVEYFYRSDTEDAMRYVTGLKLDDRIIRVDWD 110
                 468***********************************99999********************************874 PP

  == domain 2    score: -5.8 bits;  conditional E-value: 8
   TIGR01622  57 dkyrdrerrsrkrreserererekerrredevrrkrkeredr 98 
                    r+++ + + + e+  +                      +
  MMETSP1137-20121227|8967_1 173 ADSRGKKAEPAPQAERPEPS--------------------AK 194
                 33333333322222221111....................11 PP

>> TIGR01628  PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.0   0.0   7.7e-12   3.9e-09       2      77 ..      35     110 ..      34     123 .. 0.94

  Alignments for each domain:
  == domain 1    score: 34.0 bits;  conditional E-value: 7.7e-12
   TIGR01628   2 SlyvGdLdedvtEavLyelFkevgsvlsvRvCrDsvtrrSLgYaYvNfqnladAerAldtlnyknlkgkpiRlmws 77 
                  lyvG+L    tE++LyelF + g+v  + +  D  ++   g+ +v +  + d e A+  +   +l ++ iR+ w 
  MMETSP1137-20121227|8967_1  35 TLYVGNLSFYTTEEQLYELFGRCGDVKRIVMGLDRFAKTPCGFCFVEYFYRSDTEDAMRYVTGLKLDDRIIRVDWD 110
                 69************************************************************99*********996 PP

>> TIGR01642  U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.8   0.0   9.1e-11   4.7e-08     294     370 ..      31     107 ..       8     110 .. 0.92

  Alignments for each domain:
  == domain 1    score: 29.8 bits;  conditional E-value: 9.1e-11
   TIGR01642 294 dsedklyignLPldlkddqvkeLLesFGdLkaFnliKdlatGlsKGyaFceykdssvtdlAiaaLnGiklgdkkLnv 370
                  +   ly+gnL ++ +++q+ eL    Gd+k   +  d+      G++F+ey   s+t+ A+  + G+kl d+++ v
  MMETSP1137-20121227|8967_1  31 KDSTTLYVGNLSFYTTEEQLYELFGRCGDVKRIVMGLDRFAKTPCGFCFVEYFYRSDTEDAMRYVTGLKLDDRIIRV 107
                 45678******************************9************************************99887 PP

>> TIGR01659  sex-lethal: sex-lethal family splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.2   0.0   6.1e-10   3.1e-07     189     253 ..      28      93 ..      21     168 .. 0.92

  Alignments for each domain:
  == domain 1    score: 28.2 bits;  conditional E-value: 6.1e-10
   TIGR01659 189 esikd.tnlyvtnlprtitddqldtifgkygsivqknilrdkltgkprgvafvrfnkreeaqeais 253
                 e ikd t lyv nl+   t++ql  +fg+ g + +  +  d+++ +p g  fv +  r ++++a+ 
  MMETSP1137-20121227|8967_1  28 EAIKDsTTLYVGNLSFYTTEEQLYELFGRCGDVKRIVMGLDRFAKTPCGFCFVEYFYRSDTEDAMR 93 
                 78998679************************99999999******************99999875 PP

>> TIGR01661  ELAV_HUD_SF: ELAV/HuD family splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.6   0.0   1.5e-08   7.5e-06       4      78 ..      34     108 ..      31     111 .. 0.92

  Alignments for each domain:
  == domain 1    score: 23.6 bits;  conditional E-value: 1.5e-08
   TIGR01661   4 tnlivnylPqtmtqeeirslftsiGeiescklvrdkvtGqslGyGfvnyvreedaekavnslnGlrlqnktikvs 78 
                 t l v  l    t+e++  lf+  G++  + +  d+      G+ fv+y  + d+e a+  + Gl+l ++ i+v 
  MMETSP1137-20121227|8967_1  34 TTLYVGNLSFYTTEEQLYELFGRCGDVKRIVMGLDRFAKTPCGFCFVEYFYRSDTEDAMRYVTGLKLDDRIIRVD 108
                 7788888999999**********************************************************9996 PP

>> TIGR01648  hnRNP-R-Q: hnRNP-R, Q splicing factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   0.0   1.2e-05    0.0059     229     301 ..      29     107 ..      13     135 .. 0.67

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 1.2e-05
   TIGR01648 229 vmakvkilyvrnlmletteeiieksfsefkpGaverv........kkirdyafvhfedredavkamdelnGkeleGseiev 301
                  ++    lyv nl   ttee +   f++   G v r+        k    + fv +  r d+ +am  + G +l+   i v
  MMETSP1137-20121227|8967_1  29 AIKDSTTLYVGNLSFYTTEEQLYELFGRC--GDVKRIvmgldrfaKTPCGFCFVEYFYRSDTEDAMRYVTGLKLDDRIIRV 107
                 44445567888888888888888877776..66666422222111222346778888888888888888887777776665 PP

>> TIGR01649  hnRNP-L_PTB: hnRNP-L/PTB/hephaestus splicing factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   7.1e-05     0.037     298     368 ..      33     107 ..      10     110 .. 0.80

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 7.1e-05
   TIGR01649 298 gsVllvsnLeeekvtpdalFnlfgvYGdverv.....kilknkketalvemadpqqaqlalthLdkvklfgkklrv 368
                 ++ l v nL     t ++l+ lfg  Gdv+r+     ++ k+  +  +ve+    +++ a+ ++ ++kl ++ +rv
  MMETSP1137-20121227|8967_1  33 STTLYVGNLSF-YTTEEQLYELFGRCGDVKRIvmgldRFAKTPCGFCFVEYFYRSDTEDAMRYVTGLKLDDRIIRV 107
                 45667777754.4578899************955555577888889999999999999999999999999999998 PP

>> TIGR01645  half-pint: poly-U binding splicing factor, half-pint family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0    0.0001     0.052     109     154 ..      36      82 ..      18     112 .. 0.84

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 0.0001
   TIGR01645 109 v.vGsisfelkedtlrrafdPfGPiksinmsWdpvtqkhkgfafvee 154
                 + vG +sf   e+ l + f   G +k i m  d  ++   gf fve 
  MMETSP1137-20121227|8967_1  36 LyVGNLSFYTTEEQLYELFGRCGDVKRIVMGLDRFAKTPCGFCFVEY 82 
                 449******************************************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (215 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        67  (0.0163335); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         8  (0.00195027); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.23u 0.16s 00:00:00.39 Elapsed: 00:00:00.32
# Mc/sec: 886.80
//
Query:       MMETSP1137-20121227|8968_1  [L=359]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00024   18.5   0.2    0.00037   17.9   0.1    1.2  1  TIGR03534 RF_mod_PrmC: protein-(glutamine-N5) methyltransferase, release factor-specific
    0.00037   17.5   0.2    0.00055   16.9   0.1    1.2  1  TIGR00536 hemK_fam: methyltransferase, HemK family
     0.0004   18.5   0.1    0.00073   17.6   0.0    1.4  1  TIGR02469 CbiT: precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit
     0.0035   14.6   0.2     0.0059   13.9   0.2    1.3  1  TIGR00406 prmA: ribosomal protein L11 methyltransferase
  ------ inclusion threshold ------
      0.019   12.5   0.0      0.032   11.7   0.0    1.3  1  TIGR00537 hemK_rel_arch: putative methylase


Domain annotation for each model (and alignments):
>> TIGR03534  RF_mod_PrmC: protein-(glutamine-N5) methyltransferase, release factor-specific
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.1   4.5e-07   0.00037      85     139 ..     110     166 ..      96     181 .. 0.76

  Alignments for each domain:
  == domain 1    score: 17.9 bits;  conditional E-value: 4.5e-07
   TIGR03534  85 kkkeklkvlDlgtGsG..aIalalakel..pdakviavDiseeAlkvarkNakrlglke 139
                 + +   ++l++g+G G  aI+lal+     +  ++ia+D+++++l++ r Nak++g++ 
  MMETSP1137-20121227|8968_1 110 QPN--SSILEIGSGIGtaAIGLALLGSAdhRAPSIIATDVCKDSLELLRLNAKANGISI 166
                 334..49*****9988445777776654337789*********************9884 PP

>> TIGR00536  hemK_fam: methyltransferase, HemK family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.1   6.8e-07   0.00055     115     164 ..     112     165 ..      96     173 .. 0.73

  Alignments for each domain:
  == domain 1    score: 16.9 bits;  conditional E-value: 6.8e-07
   TIGR00536 115 lkhilDlgtGsGcIalalAl....eipnaeviavDistdalavaeeNaeklkle 164
                    il++g G G  a++lAl      +  ++ia D+ +d l++ + Na+ ++++
  MMETSP1137-20121227|8968_1 112 NSSILEIGSGIGTAAIGLALlgsaDHRAPSIIATDVCKDSLELLRLNAKANGIS 165
                 35788888777766666664111155588********************99886 PP

>> TIGR02469  CbiT: precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.0   8.9e-07   0.00073      17      93 ..     109     189 ..     105     208 .. 0.75

  Alignments for each domain:
  == domain 1    score: 17.6 bits;  conditional E-value: 8.9e-07
   TIGR02469  17 lkkgdvllDiGaGtGsvtieaarl....vpkgrvyaierneealelieeNlrrfgvsnieivegdapkaeeds.leeadavf 93 
                 l++++ +l+iG+G G+ +i +a l    ++  +++a +  +++lel++ N++++g+s  e ve+   ++ + +  +++ av+
  MMETSP1137-20121227|8968_1 109 LQPNSSILEIGSGIGTAAIGLALLgsadHRAPSIIATDVCKDSLELLRLNAKANGISIAERVEAR-DDVSQSTvAPAVSAVC 189
                 68899***********999998763322444789********************99888877753.2333333456666666 PP

>> TIGR00406  prmA: ribosomal protein L11 methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.2   7.2e-06    0.0059     154     217 ..     106     174 ..      96     192 .. 0.81

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 7.2e-06
   TIGR00406 154 esldlkdkkviDvGcGSGiLsiaalklgaa.....kvvavDiDplavesarkNlelNqvsdllqvklen 217
                 ++l +++ +++++G+G G  +i++++lg a     +++a D+   ++e  r N++ N++s   +v   +
  MMETSP1137-20121227|8968_1 106 SHLLQPNSSILEIGSGIGTAAIGLALLGSAdhrapSIIATDVCKDSLELLRLNAKANGISIAERVEARD 174
                 67788999*******************96533333899*********************9887776654 PP

>> TIGR00537  hemK_rel_arch: putative methylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   3.9e-05     0.032      20      68 ..     112     166 ..      93     179 .. 0.75

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 3.9e-05
   TIGR00537  20 nddvleiGaGtGlvairlk......ekgkkivatdinPfavkllkenaklnnvel 68 
                 n  +leiG+G G  ai l+      +++  i+atd+   +  ll+ nak n++ +
  MMETSP1137-20121227|8968_1 112 NSSILEIGSGIGTAAIGLAllgsadHRAPSIIATDVCKDSLELLRLNAKANGISI 166
                 4459*****999988865422211144558*********************9887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (359 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       107  (0.0260848); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.29u 0.16s 00:00:00.44 Elapsed: 00:00:00.33
# Mc/sec: 1435.88
//
Query:       MMETSP1137-20121227|8970_1  [L=991]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (991 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       142  (0.0346173); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.58u 0.18s 00:00:00.76 Elapsed: 00:00:00.61
# Mc/sec: 2144.28
//
Query:       MMETSP1137-20121227|8971_1  [L=258]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (258 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        63  (0.0153584); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.15s 00:00:00.38 Elapsed: 00:00:00.36
# Mc/sec: 945.92
//
Query:       MMETSP1137-20121227|8972_1  [L=280]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (280 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        53  (0.0129205); expected 82.0 (0.02)
Passed bias filter:                       31  (0.00755729); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.16s 00:00:00.39 Elapsed: 00:00:00.40
# Mc/sec: 923.92
//
Query:       MMETSP1137-20121227|8973_1  [L=101]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        59  (0.0143832); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.17s 00:00:00.33 Elapsed: 00:00:00.32
# Mc/sec: 416.59
//
Query:       MMETSP1137-20121227|8974_1  [L=81]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (81 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        59  (0.0143832); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.27
# Mc/sec: 395.97
//
Query:       MMETSP1137-20121227|8975_1  [L=136]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (136 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        46  (0.011214); expected 82.0 (0.02)
Passed bias filter:                       42  (0.0102389); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.11s 00:00:00.26 Elapsed: 00:00:00.54
# Mc/sec: 332.42
//
Query:       MMETSP1137-20121227|8976_1  [L=499]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (499 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       113  (0.0275475); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.48u 0.13s 00:00:00.61 Elapsed: 00:00:00.51
# Mc/sec: 1291.42
//
Query:       MMETSP1137-20121227|8977_1  [L=175]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (175 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       110  (0.0268162); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.13s 00:00:00.30 Elapsed: 00:00:00.46
# Mc/sec: 502.13
//
Query:       MMETSP1137-20121227|8978_1  [L=309]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (309 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        65  (0.0158459); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.13s 00:00:00.39 Elapsed: 00:00:00.77
# Mc/sec: 529.67
//
Query:       MMETSP1137-20121227|8979_1  [L=414]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (414 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       129  (0.0314481); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.15s 00:00:00.43 Elapsed: 00:00:00.49
# Mc/sec: 1115.17
//
Query:       MMETSP1137-20121227|8980_1  [L=126]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (126 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        46  (0.011214); expected 82.0 (0.02)
Passed bias filter:                       41  (0.00999512); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.15s 00:00:00.29 Elapsed: 00:00:00.26
# Mc/sec: 639.64
//
Query:       MMETSP1137-20121227|8981_1  [L=450]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (450 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        73  (0.0177962); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.15s 00:00:00.46 Elapsed: 00:00:00.94
# Mc/sec: 631.86
//
Query:       MMETSP1137-20121227|8982_1  [L=405]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.015   12.4   0.0      0.024   11.6   0.0    1.3  1  TIGR02787 codY_Gpos: GTP-sensing transcriptional pleiotropic repressor CodY


Domain annotation for each model (and alignments):
>> TIGR02787  codY_Gpos: GTP-sensing transcriptional pleiotropic repressor CodY
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0     6e-06     0.024      36     127 ..     120     214 ..     103     236 .. 0.77

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 6e-06
   TIGR02787  36 nvyvisrkGellGyslkekvendrveklfkdkkfpeeyvka.lvk....ikdteanipvdseltvfpeesrellkkglttivPivgsGerlGtlila 127
                 ++   +r G+  G s++ k e +rv++  +++ f+e y++  l+     i++ ea++  d   t +    ++  + g +t++ i+++G +l  + + 
  MMETSP1137-20121227|8982_1 120 DATCRDRAGQRSGQSFSRKRELQRVQQTGETNPFAESYQEGdLQXvhkeIREKEAEV--DAATTRILRTAEDTRQVGAATLAGIHAQGAQLKRIRMG 214
                 566667899999**************************9852444111155555555..66677777788899999************999777664 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (405 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       180  (0.043881); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.32u 0.14s 00:00:00.46 Elapsed: 00:00:00.49
# Mc/sec: 1090.93
//
Query:       MMETSP1137-20121227|8983_1  [L=191]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (191 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       105  (0.0255973); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.12s 00:00:00.31 Elapsed: 00:00:00.32
# Mc/sec: 787.81
//
Query:       MMETSP1137-20121227|8984_1  [L=272]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (272 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        82  (0.0199902); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.15s 00:00:00.37 Elapsed: 00:00:00.40
# Mc/sec: 897.53
//
Query:       MMETSP1137-20121227|8985_1  [L=307]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (307 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        81  (0.0197465); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.18s 00:00:00.40 Elapsed: 00:00:00.28
# Mc/sec: 1397.26
//
Query:       MMETSP1137-20121227|8986_1  [L=289]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      2e-53  179.3   0.0    2.9e-53  178.7   0.0    1.3  1  TIGR00417 speE: spermidine synthase
     0.0031   14.8   0.0     0.0085   13.4   0.0    1.6  2  TIGR00006 TIGR00006: S-adenosyl-methyltransferase MraW


Domain annotation for each model (and alignments):
>> TIGR00417  speE: spermidine synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  178.7   0.0   1.4e-56   2.9e-53      14     267 ..       4     252 ..       1     256 [. 0.86

  Alignments for each domain:
  == domain 1    score: 178.7 bits;  conditional E-value: 1.4e-56
   TIGR00417  14 lkvdkvLyeeksefqdvlifeteefGkvlvlDgvvqtterDefiyheliahvpllahenpkkvlviGGGDGgvlrevvkhksveeitlveiDekvielskkylpklsgalddervdlkidDGvkflrdtekkfDviivDstdPv..GpaetlfekefyelvkkalnedGvivaqsesl..llqlelikdlkrkvkevfekvelylaaiPtypsgllsfivasknklsnleveeerike...eaedlktkyynkeihkaafv 267
                  + +k+L++  sefq v ++e e fG+vl++Dg +q +  Def+yhe           npk v + GGG+G++ rev++h++ve+ ++v+iD++v+++++++lp+ + a++d+r++l+idD +  l++    fDvii+D  dP   Gp+ +l++ efy+ +k++ln++G++v+qs++    +++ + + ++++++ vf++v  y +a+  +    +++ +as ++    +   +++ e   +  ++++k+ + + + ++f 
  MMETSP1137-20121227|8986_1   4 YQLKKILHTGTSEFQTVDLVELEPFGRVLMIDGLIQSSQSDEFVYHE----------XNPKSVYIGGGGEGSTAREVLRHSTVERCVMVDIDKDVVHFCREHLPENTEAFNDPRLELIIDDAKAVLEKQ-AGFDVIIMDLDDPLegGPCYQLYTTEFYKMIKSKLNPGGIFVTQSGAAgiKMHQTVWSPVHNTLRAVFPSVAAYSQAVYSFL-DEWGWNMASSDESVMAQLTPQQVDEriaQRIKGELKFLDGQSYVGIFS 252
                 5789******************************************9..........6***************************************************************98888765.99***********7679***************************887511567888999*******************9986.578888888875444443333333200034456677777766666665 PP

>> TIGR00006  TIGR00006: S-adenosyl-methyltransferase MraW
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.0   4.1e-06    0.0085      22     102 ..      52     132 ..      45     134 .. 0.73
   2 ?   -2.6   0.0      0.29     6e+02     112     124 ..     271     283 ..     267     284 .. 0.81

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 4.1e-06
   TIGR00006  22 kedgiyiDlTlGeggHskaiLeklsegrLiaidrDkqaieaakellkdlkevvlikdnfan.lfeelkel..kvtkidgillDL 102
                 +++ +yi +  Geg  ++ +L + +  r +++d Dk+ +++++e l ++   + ++d   + + + +k    k   +d i++DL
  MMETSP1137-20121227|8986_1  52 NPKSVYIGG-GGEGSTAREVLRHSTVERCVMVDIDKDVVHFCREHLPENT--EAFNDPRLElIIDDAKAVleKQAGFDVIIMDL 132
                 567788865.59*********99999*******************95544..55555433303333333222557789999998 PP

  == domain 2    score: -2.6 bits;  conditional E-value: 0.29
   TIGR00006 112 aerGFsfkkdgpl 124
                 +++ Fsf++++ l
  MMETSP1137-20121227|8986_1 271 ENKSFSFMHSQGL 283
                 7899*****9865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (289 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       130  (0.0316919); expected 82.0 (0.02)
Passed bias filter:                      121  (0.0294978); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.30u 0.18s 00:00:00.48 Elapsed: 00:00:00.56
# Mc/sec: 681.16
//
Query:       MMETSP1137-20121227|8987_1  [L=590]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (590 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        67  (0.0163335); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.17s 00:00:00.55 Elapsed: 00:00:00.56
# Mc/sec: 1390.60
//
Query:       MMETSP1137-20121227|8988_1  [L=65]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (65 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        23  (0.00560702); expected 82.0 (0.02)
Passed bias filter:                       20  (0.00487567); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:00.32
# Mc/sec: 268.10
//
Query:       MMETSP1137-20121227|8989_1  [L=234]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (234 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        70  (0.0170648); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.16s 00:00:00.37 Elapsed: 00:00:00.34
# Mc/sec: 908.40
//
Query:       MMETSP1137-20121227|8990_1  [L=67]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (67 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       107  (0.0260848); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.37
# Mc/sec: 239.01
//
Query:       MMETSP1137-20121227|8991_1  [L=180]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (180 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       119  (0.0290102); expected 82.0 (0.02)
Passed bias filter:                      106  (0.0258411); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.14s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 819.24
//
Query:       MMETSP1137-20121227|8992_1  [L=172]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.8e-44  147.4   0.3    5.4e-44  146.9   0.2    1.2  1  TIGR00059 L17: ribosomal protein L17


Domain annotation for each model (and alignments):
>> TIGR00059  L17: ribosomal protein L17
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  146.9   0.2   1.3e-47   5.4e-44       2     111 ..      63     172 .]      62     172 .] 0.99

  Alignments for each domain:
  == domain 1    score: 146.9 bits;  conditional E-value: 1.3e-47
   TIGR00059   2 vrklgrtsahRkallrnlasallkhekiettkakakelrrvveklitlakvdnlaarrevkaylrnkellkkLfseiapryeereGGYtRilklgkRrgDaaemailelv 111
                 +rkl+r +++Rkallr l++++++++ki+tt+a+akelr++v+++itlak+++l+arr++  y+++k+l+++Lf++ + ry +r+GGYtR+lk g+RrgD+aem i+elv
  MMETSP1137-20121227|8992_1  63 FRKLNRPADQRKALLRGLTTEVIRNGKITTTLARAKELRKRVDHMITLAKDGSLHARRQALGYMYDKQLVHALFENAPERYSDRNGGYTRVLKDGFRRGDNAEMGIIELV 172
                 79***********************************************************************************************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (172 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       125  (0.0304729); expected 82.0 (0.02)
Passed bias filter:                      109  (0.0265724); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.20u 0.16s 00:00:00.36 Elapsed: 00:00:00.40
# Mc/sec: 567.55
//
Query:       MMETSP1137-20121227|8994_1  [L=42]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (42 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        36  (0.00877621); expected 82.0 (0.02)
Passed bias filter:                       36  (0.00877621); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.16s 00:00:00.26 Elapsed: 00:00:00.30
# Mc/sec: 184.78
//
Query:       MMETSP1137-20121227|8995_1  [L=399]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.8e-19   67.4   0.7    3.4e-19   66.5   0.5    1.5  1  TIGR01389 recQ: ATP-dependent DNA helicase RecQ
    3.6e-19   66.7   0.6      1e-18   65.2   0.4    1.7  1  TIGR00614 recQ_fam: ATP-dependent DNA helicase, RecQ family
    6.5e-19   64.9   0.0      1e-18   64.3   0.0    1.2  1  TIGR04121 DEXH_lig_assoc: DEXH box helicase, DNA ligase-associated
    2.5e-12   44.1   0.2    1.4e-06   25.1   0.0    2.2  2  TIGR00643 recG: ATP-dependent DNA helicase RecG
    2.2e-11   40.5   0.0    2.4e-05   20.6   0.0    2.0  2  TIGR03817 DECH_helic: helicase/secretion neighborhood putative DEAH-box helicase
    2.4e-10   37.1   2.7    4.5e-09   32.9   0.3    2.2  2  TIGR00631 uvrb: excinuclease ABC subunit B
    8.2e-08   29.6   1.6    6.5e-07   26.6   0.5    2.0  2  TIGR01587 cas3_core: CRISPR-associated helicase Cas3
    1.2e-05   20.9   0.1      0.017   10.4   0.1    2.1  2  TIGR01054 rgy: reverse gyrase
    5.3e-05   20.2   0.2     0.0082   13.0   0.0    2.2  2  TIGR04095 dnd_restrict_1: DNA phosphorothioation system restriction enzyme
    0.00033   16.9   0.0    0.00055   16.2   0.0    1.3  1  TIGR00580 mfd: transcription-repair coupling factor
    0.00067   16.2   0.1     0.0073   12.7   0.0    2.3  2  TIGR00595 priA: primosomal protein N'


Domain annotation for each model (and alignments):
>> TIGR01389  recQ: ATP-dependent DNA helicase RecQ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.5   0.5   9.2e-22   3.4e-19      10     339 ..      45     380 ..      35     396 .. 0.65

  Alignments for each domain:
  == domain 1    score: 66.5 bits;  conditional E-value: 9.2e-22
   TIGR01389  10 GyeeFRggqeeiieevldgrdvlavlPtGGGkslCYqvPaLll......kgltvvisPLisLmkDqvdqLraaGveaaa.lnstlsakeaqeilkalaagelklLYvaPerleqdkflellerlkiallavDeahCvsqWGhDFRpeYkrlgelaerfpkap.vialtat..ad..aevredivekLelkdaaefvssfdRenlafsvvkkenkkkqlleylkkereksGiiYassRkkveelaeaLeskgiealaYhaGlskkvRaeaqekFleddvkvvvatvaFGmGidksdvRfvihldlPknlesyyqeaGRaGRDGlkaeaillyseaDlallkrl 339
                 G+e+    q+  i+ +l  rd++a    G Gk   + +  L        +  +++++P   L    v+ + a G    +   + +  ++ +e +++l++g ++l+  +P r+     +++++   i+ + +Dea  +   G  F+ +   +  + +++p +  v  + at  ad  + + + +++ +++  ++   +    ++ + +v+++  k + l +  ++ + +  +i+ ++R+kve l++ ++s+ ++  a ha l++k+R+   ++F     +v++ t     Gid  +v  vi +dlP n e+y    GR GR G+k  ai + +++D+  l+++
  MMETSP1137-20121227|8995_1  45 GFEKPSAIQQRAIKPLLMMRDTIAQAQSGTGKTATFTIGLLQNidlnnsDCQALILAPTRELASQIVKVVMAIGDYMRVsTMACIGGTNIREDMERLRSG-VQLVVGTPGRVFDMINRRAFNVEYIHYFVLDEADEMLSRG--FKDQ---IYDVFQKLPPTVhVGLFSATmpADvlELTTKFMRDPIRILVKRDELTLDGIKQFYVMVEREDWKLDTLCDLYETLTITQAMIFVNTRRKVEFLTQEMHSRDFTCSAIHADLDQKERELIMREFRSGSSRVLITTDVLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINFITHEDVRTLREI 380
                 5555556666666666666666666666666666666654432111111223555566655555555555555522221011223333333334444433.6666666666666666666666666666666666544444..3322...2222222222221111222200221123344444444444433333333345667778888888899999888888899***********************************************************************************************************998875 PP

>> TIGR00614  recQ_fam: ATP-dependent DNA helicase, RecQ family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.2   0.4   2.8e-21     1e-18      13     341 ..      50     380 ..      41     394 .. 0.60

  Alignments for each domain:
  == domain 1    score: 65.2 bits;  conditional E-value: 2.8e-21
   TIGR00614  13 rpvqlevinavlegrdalvvmatGgGksLCyqlpavv......sdgltlvisPLisLmeDqvlqLkasdisatlLnsaqskeeakevladl..kdgklkllYvtPekvsksksllqkle.erkkltliavDeahCisqWGhDfRsdykalgsLkqklPsvpviaLtatasssvreDilklLk......lkkpqvtitsfdRpnlkyeveekks..kiledllkfivkefkgksGiiYClsrkkveqvaaeLqkkglaaaaYhagleesarkevqkkflrdeiqvvvatvafGmGinkpdvRfvihyslpksiesYYqesGRaGRDglksecvlfyapaDvallrrl 341
                    q+++i+  l  rd++     G Gk   + +  +       sd  +l+++P + L    v+ +    i   +  s+ +    +++ +d+    + ++l+  tP +v      +++   +   +  +++Dea  +   G  f+++    +  ++  P+v v   +at    v e  +k ++      +k+ + t  +  +  ++ +ve+     + l dl + ++     +  +i+ ++r+kve +++e+++++ ++ a ha+l++++r+ + ++f     +v++ t     Gi+  +v  vi y+lp + e+Y   +GR GR g k  ++ f +++Dv +lr++
  MMETSP1137-20121227|8995_1  50 SAIQQRAIKPLLMMRDTIAQAQSGTGKTATFTIGLLQnidlnnSDCQALILAPTRELASQIVKVVM--AIGDYMRVSTMACIGGTNIREDMerLRSGVQLVVGTPGRVFDM---INRRAfNVEYIHYFVLDEADEMLSRG--FKDQIY--DVFQKLPPTVHVGLFSATMPADVLELTTKFMRdpirilVKRDELTLDGIKQ--FYVMVEREDWklDTLCDLYETLT----ITQAMIFVNTRRKVEFLTQEMHSRDFTCSAIHADLDQKERELIMREFRSGSSRVLITTDVLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINFITHEDVRTLREI 380
                 555666666666666666666666666666655443211111133345555665555443333332..2333344444444444555555543344556666666666543...22222245556666666665554444..443321..122222344444444555544444433333211100002222333333322..23333333221244444444444....45559**********************************************************************************************************99986 PP

>> TIGR04121  DEXH_lig_assoc: DEXH box helicase, DNA ligase-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.3   0.0   2.8e-21     1e-18      14     345 ..      49     358 ..      43     378 .. 0.82

  Alignments for each domain:
  == domain 1    score: 64.3 bits;  conditional E-value: 2.8e-21
   TIGR04121  14 prafQkevleaaeegesglliapTGaGKTlavflpslielaakekpkkglkvlyitPLkaLakdieraleapieelgleirvelrtGDtssserarqrkkppdiLltTpEslaLllsskdaeklfkdlravvvDElHeLlgskRGdlleLaLarLrrlapelrvvglsATvgnleeaaevllgeekeekaklvkakekkalevesllpeeeeklPwaGhlglkaleevleeikkarttlvFtNtRsqaEllfqaLleaneelaleialhHgsldkeqRekveaalkagklravvcTssLdLGvDfgdvdlviqvGspkgvaRllQRiGRsnH 345
                 p a Q+++++ +   ++++ +a  G+GKT +  ++ l ++     +++  ++l ++P + La++i + ++a  + +++++      G t+ +e  ++ ++  ++++ Tp  +  ++ ++     ++ ++  v+DE  e+l+  RG   ++    +++l p+++v   sAT+   +++ e+ ++  ++    lvk +e     +++     +e+  w+    l +l +++e+++  +++++F+NtR + E+l q++ +       + +  H+ ld+++Re + +++++g+ r++++T  L  G+D ++v lvi+   p +    + RiGR + 
  MMETSP1137-20121227|8995_1  49 PSAIQQRAIKPLLMMRDTIAQAQSGTGKTATFTIGLLQNID---LNNSDCQALILAPTRELASQIVKVVMAIGDYMRVSTMA--CIGGTNIREDMERLRSGVQLVVGTPGRVFDMINRRAF--NVEYIHYFVLDEADEMLS--RGFKDQI-YDVFQKLPPTVHVGLFSATMP--ADVLELTTKFMRDPIRILVKRDELTLDGIKQFYVM-VEREDWK----LDTLCDLYETLTI-TQAMIFVNTRRKVEFLTQEMHSRDF----TCSAIHADLDQKERELIMREFRSGSSRVLITTDVLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGR 358
                 678899999********************888888888887...667789****************9999998888877655..4599**9999999***************999987765..57889***********98..6655554.4678999999999999***93..34444444444433477888866666666665555.8899997....6778888888876.5689************999876544....4555699**********************************************************874 PP

>> TIGR00643  recG: ATP-dependent DNA helicase RecG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.0   9.2e-07   0.00034     260     357 ..      67     163 ..      50     229 .. 0.77
   2 !   25.1   0.0   3.7e-09   1.4e-06     476     532 ..     281     339 ..     260     375 .. 0.85

  Alignments for each domain:
  == domain 1    score: 17.2 bits;  conditional E-value: 9.2e-07
   TIGR00643 260 LlqGdVGsGKTvVavlallavie...sGyqvalmaPTeiLAeQhyeklrelleplgievalLtgslkkkkkkelleeiasGeielvvGThallqekvefke 357
                 + q + G+GKT   ++ ll+ i+   s  q++++aPT  LA+Q ++ +  + +   ++v+ ++    ++  +e +e+++sG ++lvvGT   +++ ++ ++
  MMETSP1137-20121227|8995_1  67 IAQAQSGTGKTATFTIGLLQNIDlnnSDCQALILAPTRELASQIVKVVMAIGDY--MRVSTMACIGGTN-IREDMERLRSG-VQLVVGTPGRVFDMINRRA 163
                 568889*****998888888875332778**************99887776554..6776666544444.44556899988.89*****888777766544 PP

  == domain 2    score: 25.1 bits;  conditional E-value: 3.7e-09
   TIGR00643 476 lkkaf..pklnvallhgrlksdekeevleeFrekevdiLvaTtviEvGvdvPnatvmvi 532
                 l++ +   ++++  +h+ l ++e+e +++eFr+++  +L++T v+  G+dv ++++++ 
  MMETSP1137-20121227|8995_1 281 LTQEMhsRDFTCSAIHADLDQKERELIMREFRSGSSRVLITTDVLARGIDVQQVSLVIN 339
                 4444434789999****************************************999875 PP

>> TIGR03817  DECH_helic: helicase/secretion neighborhood putative DEAH-box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.0   4.2e-07   0.00016      22     168 ..      34     179 ..      30     198 .. 0.84
   2 !   20.6   0.0   6.6e-08   2.4e-05     274     381 ..     268     367 ..     253     377 .. 0.78

  Alignments for each domain:
  == domain 1    score: 17.9 bits;  conditional E-value: 4.2e-07
   TIGR03817  22 epdvvaaleaaGieapwqhqaraaelahaGehvvvatgtasGkslayllPvlsalaed.pratalylaPtkalaadqlravkelee..rdvraatydGdtpaeerewirekaryvltnPdmlhlgilpsharWakflralryvvvdechs 168
                 ++d+ + + + G e+p + q ra +     ++ +  +   +Gk+ ++ + +l+ +  +    +al laPt+ la+  +++v+++ +  r    a+  G   +e  e +r   ++v+  P  +   i    +r a  ++ ++y v+de+ +
  MMETSP1137-20121227|8995_1  34 KEDLLRGIYSYGFEKPSAIQQRAIKPLLMMRDTIAQAQSGTGKTATFTIGLLQNIDLNnSDCQALILAPTRELASQIVKVVMAIGDymRVSTMACIGGTNIREDMERLRSGVQLVVGTPGRVFDMI----NRRAFNVEYIHYFVLDEADE 179
                 67888899999***********999999999999999999**************976527889*********************99745555667777778899999************8877655....45566778888888888865 PP

  == domain 2    score: 20.6 bits;  conditional E-value: 6.6e-08
   TIGR03817 274 tltfvrsrrgaevvaleakerlaevdaelaer...vaayraGylaedrreleralkdGellgvaatnalelGvdisGldavviaGfPGtvaslwqqaGraGrrgqdalvvl 381
                 +++fv++rr+ e ++            e+ +r    +a  a   + +r  + r++++G+ + + +t+ l  G+d+  +  v+    P  +  +  ++Gr Gr g++ +++ 
  MMETSP1137-20121227|8995_1 268 AMIFVNTRRKVEFLTQ-----------EMHSRdftCSAIHADLDQKERELIMREFRSGSSRVLITTDVLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAIN 367
                 4555555555555443...........3333321156778888889999999*****************************************************999873 PP

>> TIGR00631  uvrb: excinuclease ABC subunit B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.2   0.1     0.006       2.2      10      72 ..      49     112 ..      39     117 .. 0.62
   2 !   32.9   0.3   1.2e-11   4.5e-09     444     542 ..     266     359 ..     237     395 .. 0.79

  Alignments for each domain:
  == domain 1    score: 4.2 bits;  conditional E-value: 0.006
   TIGR00631  10 PaGDqpkaieklvesleagekeqvLlGvtGsGktft..ianv....iakvqkPtlvlahnktLaaqLye 72 
                 P+  q +ai+ l        ++ +     G+Gkt+t  i  +    +++++  +l+la+ + La+q+++
  MMETSP1137-20121227|8995_1  49 PSAIQQRAIKPLLMM-----RDTIAQAQSGTGKTATftIGLLqnidLNNSDCQALILAPTRELASQIVK 112
                 444455555555544.....4445555567777655114433221445677889************986 PP

  == domain 2    score: 32.9 bits;  conditional E-value: 1.2e-11
   TIGR00631 444 ervlvttltkkmaedltdylkelgikvkylhseidtlerveiirdLrkgefdvlvGinLLreGlDlPevslvailDadkeGflrsersLiqtiGraarn 542
                 +++++ + t++  e lt+ ++ ++     +h ++d  er  i+r++r g+  vl+  ++L  G+D+ +vslv   D     +  +++  i  iGr  r 
  MMETSP1137-20121227|8995_1 266 TQAMIFVNTRRKVEFLTQEMHSRDFTCSAIHADLDQKERELIMREFRSGSSRVLITTDVLARGIDVQQVSLVINYD-----LPTNRENYIHRIGRGGRF 359
                 4567888899**************************************************************8777.....455666777777777775 PP

>> TIGR01587  cas3_core: CRISPR-associated helicase Cas3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.0     0.058        22       3      49 ..      67     114 ..      65     143 .. 0.80
   2 !   26.6   0.5   1.7e-09   6.5e-07     129     333 ..     173     370 ..     155     393 .. 0.73

  Alignments for each domain:
  == domain 1    score: 1.9 bits;  conditional E-value: 0.058
   TIGR01587   3 vieAPtGyGKteaallwalklikkqkad.kvifalPtratanamyerl 49 
                 + +A  G GKt +  + +l++i+ + +d + ++  Ptr +a  + + +
  MMETSP1137-20121227|8995_1  67 IAQAQSGTGKTATFTIGLLQNIDLNNSDcQALILAPTRELASQIVKVV 114
                 678999*****9999999999999888834566669999998877655 PP

  == domain 2    score: 26.6 bits;  conditional E-value: 1.7e-09
   TIGR01587 129 iiDEvhay.eeytkalllallevlkdvdvkillmsAtlpkllkeylekielveenealdlkeekrfenqrisliekdkleeisslerllealkkekkvliivNtVdrAqelyqklkekapeeeiiLlHsrftekdrekkEaellkelkknekfvivaTQviEvslDis.vdvlitelapid..sLiQRlGRlaRygrkirenrevyvlt 333
                 ++DE++ +     k  +  +++ l    v + l sAt+p  + e+  k   +  + +++++e     ++++ +++++ + ++ +l +l e l    +++i+vNt ++   l q++     ++    +H+   +k+re      ++e+++  ++v+++T v   ++D+  v ++i    p +    i R+GR  R+grk      +  +t
  MMETSP1137-20121227|8995_1 173 VLDEADEMlSRGFKDQIYDVFQKLP-PTVHVGLFSATMPADVLELTTKFMRDPIRILVKRDELTLDGIKQFYVMVEREDWKLDTLCDLYETL-TITQAMIFVNTRRKVEFLTQEMH--SRDFTCSAIHADLDQKEREL----IMREFRSGSSRVLITTDVLARGIDVQqVSLVINYDLPTNreNYIHRIGRGGRFGRKGV---AINFIT 370
                 6666654303344445666666554.34667799*****44445555555555667777777777779999999***********9877765.67899******888888888888..44566999**9887777755....59***********************824555555566652269***********9966...444444 PP

>> TIGR01054  rgy: reverse gyrase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.5   0.0   0.00018     0.068      80     213 ..      48     181 ..      31     190 .. 0.75
   2 !   10.4   0.1   4.6e-05     0.017     137     189 ..     272     325 ..     261     342 .. 0.81

  Alignments for each domain:
  == domain 1    score: 8.5 bits;  conditional E-value: 0.00018
   TIGR01054  80 ellsiqkmWakrvlknksFaivaPtGvGkt...tfglvmslflakkgkrvyiilPttlLvkqvaeklsslaekeglnirvvayhsklstkekkevkeriengdfdilittsaflsknleklkykF...dlvfvDDvDalL 213
                 ++ +iq+   k +l+ +   + a  G Gkt   t+gl+  + l +   +++i+ Pt+ L++q+ + +  + +   +++      + +   + +e +er+++ + +++++t   +   +++  ++    ++ ++D+ D +L
  MMETSP1137-20121227|8995_1  48 KPSAIQQRAIKPLLMMRDTIAQAQSGTGKTatfTIGLLQNIDLNNSDCQALILAPTRELASQIVKVVMAIGDYMRVST-----MACIGGTNIREDMERLRS-GVQLVVGTPGRVFDMINRRAFNVeyiHYFVLDEADEML 181
                 57889999999999999999999******9644568899999999999***************999999988666555.....345777788889999998.68899998754433333333222000333457777776 PP

  == domain 2    score: 10.4 bits;  conditional E-value: 4.6e-05
   TIGR01054 137 kqvaeklsslaekeg.lnirvvayhsklstkekkevkeriengdfdilittsaf 189
                  ++ +k++ l+++      ++ a+h+ l +ke++ ++ ++++g  ++litt   
  MMETSP1137-20121227|8995_1 272 VNTRRKVEFLTQEMHsRDFTCSAIHADLDQKERELIMREFRSGSSRVLITTDVL 325
                 5788899998887651455699****************************9754 PP

>> TIGR04095  dnd_restrict_1: DNA phosphorothioation system restriction enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.3   0.0    0.0049       1.8      28      74 ..      67     114 ..      48     147 .. 0.78
   2 !   13.0   0.0   2.2e-05    0.0082     304     379 ..     281     355 ..     242     367 .. 0.85

  Alignments for each domain:
  == domain 1    score: 5.3 bits;  conditional E-value: 0.0049
   TIGR04095  28 ilkmatGtGktlt.aLalvsklaekikslvvvvvvPykhLveqWakea 74 
                 i +   GtGkt t  + l ++++ +++    ++++P ++L++q +k +
  MMETSP1137-20121227|8995_1  67 IAQAQSGTGKTATfTIGLLQNIDLNNSDCQALILAPTRELASQIVKVV 114
                 566678*****9944567777888888889999*********987755 PP

  == domain 2    score: 13.0 bits;  conditional E-value: 2.2e-05
   TIGR04095 304 vvkllgeelglrvktftaeeskeeReellkqfesgelqalvairCLDeGvDvPairtayiLasssnPrqFiqRRGR 379
                 +++ +  + +++++   a  +++eRe ++++f sg+  +l++   L  G+Dv ++   +     +n  ++i R GR
  MMETSP1137-20121227|8995_1 281 LTQEMH-SRDFTCSAIHADLDQKERELIMREFRSGSSRVLITTDVLARGIDVQQVSLVINYDLPTNRENYIHRIGR 355
                 444332.34567888889999**********************************99999999999999*999998 PP

>> TIGR00580  mfd: transcription-repair coupling factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0   1.5e-06   0.00055     689     733 ..     294     338 ..     284     377 .. 0.88

  Alignments for each domain:
  == domain 1    score: 16.2 bits;  conditional E-value: 1.5e-06
   TIGR00580 689 iaHgqmeeeeleevmleFlkkefdvLvcTtiiEsGidipnaNTii 733
                  +H+ ++++e e +m eF ++++ vL++T ++  Gid+ ++  +i
  MMETSP1137-20121227|8995_1 294 AIHADLDQKERELIMREFRSGSSRVLITTDVLARGIDVQQVSLVI 338
                 68************************************9987655 PP

>> TIGR00595  priA: primosomal protein N'
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.0      0.11        42       6      83 ..      72     151 ..      69     160 .. 0.62
   2 !   12.7   0.0     2e-05    0.0073     300     337 ..     300     337 ..     267     350 .. 0.78

  Alignments for each domain:
  == domain 1    score: 0.3 bits;  conditional E-value: 0.11
   TIGR00595   6 tGSGKtEvylkviekv...lakgksvlvLvPEiaLtaqllkrlkerfgsevavlhsk.lsasekkqawrkvklgeakvviGa 83 
                 +G GKt  +   + +     + + ++l+L P   L+ q++k + +++g  + v   + ++ ++ ++ ++++++g +++v+G+
  MMETSP1137-20121227|8995_1  72 SGTGKTATFTIGLLQNidlNNSDCQALILAPTRELASQIVKVV-MAIGDYMRVSTMAcIGGTNIREDMERLRSG-VQLVVGT 151
                 6889998885444333011455679*************99866.456666666555524444445555555444.5566666 PP

  == domain 2    score: 12.7 bits;  conditional E-value: 2e-05
   TIGR00595 300 rkkalealleqfaagkidiliGtqmiaKGldfpkvtlv 337
                  +k+ e ++++f++g  ++li t ++a+G+d ++v+lv
  MMETSP1137-20121227|8995_1 300 DQKERELIMREFRSGSSRVLITTDVLARGIDVQQVSLV 337
                 34556789****************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (399 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       178  (0.0433935); expected 82.0 (0.02)
Passed bias filter:                      125  (0.0304729); expected 82.0 (0.02)
Passed Vit filter:                        21  (0.00511945); expected 4.1 (0.001)
Passed Fwd filter:                        11  (0.00268162); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.51u 0.15s 00:00:00.66 Elapsed: 00:00:00.71
# Mc/sec: 741.74
//
Query:       MMETSP1137-20121227|8997_1  [L=298]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (298 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        98  (0.0238908); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.14s 00:00:00.40 Elapsed: 00:00:00.42
# Mc/sec: 936.49
//
Query:       MMETSP1137-20121227|8998_1  [L=287]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (287 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        66  (0.0160897); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.16s 00:00:00.37 Elapsed: 00:00:00.31
# Mc/sec: 1221.96
//
Query:       MMETSP1137-20121227|8999_1  [L=255]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (255 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       123  (0.0299854); expected 82.0 (0.02)
Passed bias filter:                      106  (0.0258411); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.16s 00:00:00.38 Elapsed: 00:00:00.39
# Mc/sec: 863.01
//
Query:       MMETSP1137-20121227|9000_1  [L=107]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0019   16.7   0.6        2.5    6.6   0.0    2.9  3  TIGR03322 alt_F1F0_F0_C: alternate F1F0 ATPase, F0 subunit C
     0.0079   14.1   0.0         10    4.1   0.0    3.1  3  TIGR01589 A_thal_3526: uncharacterized plant-specific domain TIGR01589
  ------ inclusion threshold ------
       0.06   10.7   1.9        1.3    6.3   0.1    2.1  2  TIGR01944 rnfB: electron transport complex, RnfABCDGE type, B subunit
          2    6.1  12.7        3.9    5.2   0.0    4.3  6  TIGR02167 Liste_lipo_26: bacterial surface protein 26-residue repeat


Domain annotation for each model (and alignments):
>> TIGR03322  alt_F1F0_F0_C: alternate F1F0 ATPase, F0 subunit C
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.4   0.0     0.006       6.2      25      41 ..      31      47 ..      14      53 .. 0.80
   2 ?    2.1   0.0     0.065        67      25      40 ..      60      75 ..      51      81 .. 0.88
   3 !    6.6   0.0    0.0024       2.5      17      41 ..      80     105 ..      77     107 .] 0.84

  Alignments for each domain:
  == domain 1    score: 5.4 bits;  conditional E-value: 0.006
   TIGR03322 25 palgeGravaqaleala 41
                 al+eG  ++qal+++ 
  MMETSP1137-20121227|9000_1 31 KALAEGLKINQALTSIN 47
                59************985 PP

  == domain 2    score: 2.1 bits;  conditional E-value: 0.065
   TIGR03322 25 palgeGravaqaleal 40
                 al+eG  ++q+l+++
  MMETSP1137-20121227|9000_1 60 KALAEGLKINQTLTSI 75
                59***********998 PP

  == domain 3    score: 6.6 bits;  conditional E-value: 0.0024
   TIGR03322  17 tiaiGsiG.palgeGravaqaleala 41 
                 + +iG  G  al+eG  ++qal+++ 
  MMETSP1137-20121227|9000_1  80 CSGIGNEGcKALAEGLKINQALTSIN 105
                 66788887359************985 PP

>> TIGR01589  A_thal_3526: uncharacterized plant-specific domain TIGR01589
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.0     0.015        15      19      37 ..      27      45 ..      25      47 .. 0.92
   2 ?    4.1   0.0      0.01        10      19      37 ..      56      74 ..      53      75 .. 0.92
   3 ?    2.5   0.0     0.031        32      20      37 ..      86     103 ..      84     104 .. 0.89

  Alignments for each domain:
  == domain 1    score: 3.5 bits;  conditional E-value: 0.015
   TIGR01589 19 eEtveallenakispklTk 37
                +E  +al e  ki++ lT+
  MMETSP1137-20121227|9000_1 27 DEGCKALAEGLKINQALTS 45
                7899**************8 PP

  == domain 2    score: 4.1 bits;  conditional E-value: 0.01
   TIGR01589 19 eEtveallenakispklTk 37
                +E  +al e  ki++ lT+
  MMETSP1137-20121227|9000_1 56 DEGCKALAEGLKINQTLTS 74
                8999**************8 PP

  == domain 3    score: 2.5 bits;  conditional E-value: 0.031
   TIGR01589  20 EtveallenakispklTk 37 
                 E  +al e  ki++ lT+
  MMETSP1137-20121227|9000_1  86 EGCKALAEGLKINQALTS 103
                 77899************7 PP

>> TIGR01944  rnfB: electron transport complex, RnfABCDGE type, B subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   0.1    0.0062       6.4      52      91 ..      25      69 ..       3      76 .. 0.66
   2 ?    6.3   0.1    0.0013       1.3      47      70 ..      78     101 ..      67     105 .. 0.82

  Alignments for each domain:
  == domain 1    score: 4.1 bits;  conditional E-value: 0.0062
   TIGR01944 52 CGypGCrpyaeaiaegeaink.....CpPGGeavieklaellgve 91
                 G +GC+ +ae +  ++a++      C    +++ ++lae l+++
  MMETSP1137-20121227|9000_1 25 IGDEGCKALAEGLKINQALTSinlsgCRRINDEGCKALAEGLKIN 69
                577899999999888877443111225555566666777766665 PP

  == domain 2    score: 6.3 bits;  conditional E-value: 0.0013
   TIGR01944  47 tqCgqCGypGCrpyaeaiaegeai 70 
                 ++C+  G +GC+ +ae +  ++a+
  MMETSP1137-20121227|9000_1  78 SDCSGIGNEGCKALAEGLKINQAL 101
                 78999**********999877765 PP

>> TIGR02167  Liste_lipo_26: bacterial surface protein 26-residue repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0       1.1   1.1e+03       4       8 ..      29      33 ..      28      33 .. 0.85
   2 ?    5.2   0.0    0.0038       3.9       5      15 ..      40      50 ..      40      50 .. 0.86
   3 ?   -2.6   0.0       1.1   1.1e+03       4       8 ..      58      62 ..      57      62 .. 0.85
   4 ?    3.5   0.2     0.013        13       8      14 ..      72      78 ..      69      79 .. 0.87
   5 ?   -2.6   0.0       1.1   1.1e+03       4       8 ..      87      91 ..      86      91 .. 0.85
   6 ?    4.1   0.1    0.0085       8.7       5      14 ..      98     107 .]      98     107 .] 0.89

  Alignments for each domain:
  == domain 1    score: -2.6 bits;  conditional E-value: 1.1
   TIGR02167  4 gCssL 8 
                gC++L
  MMETSP1137-20121227|9000_1 29 GCKAL 33
                8**98 PP

  == domain 2    score: 5.2 bits;  conditional E-value: 0.0038
   TIGR02167  5 CssLtsLDlSn 15
                + +Lts++lS+
  MMETSP1137-20121227|9000_1 40 NQALTSINLSG 50
                579******95 PP

  == domain 3    score: -2.6 bits;  conditional E-value: 1.1
   TIGR02167  4 gCssL 8 
                gC++L
  MMETSP1137-20121227|9000_1 58 GCKAL 62
                8**98 PP

  == domain 4    score: 3.5 bits;  conditional E-value: 0.013
   TIGR02167  8 LtsLDlS 14
                Lts+DlS
  MMETSP1137-20121227|9000_1 72 LTSIDLS 78
                9*****9 PP

  == domain 5    score: -2.6 bits;  conditional E-value: 1.1
   TIGR02167  4 gCssL 8 
                gC++L
  MMETSP1137-20121227|9000_1 87 GCKAL 91
                8**98 PP

  == domain 6    score: 4.1 bits;  conditional E-value: 0.0085
   TIGR02167   5 CssLtsLDlS 14 
                 + +Lts++lS
  MMETSP1137-20121227|9000_1  98 NQALTSINLS 107
                 579******9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (107 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        65  (0.0158459); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.17u 0.10s 00:00:00.27 Elapsed: 00:00:00.46
# Mc/sec: 307.02
//
Query:       MMETSP1137-20121227|9001_1  [L=197]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (197 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        76  (0.0185275); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.16s 00:00:00.36 Elapsed: 00:00:00.28
# Mc/sec: 896.62
//
Query:       MMETSP1137-20121227|9002_1  [L=112]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (112 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        70  (0.0170648); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.13s 00:00:00.27 Elapsed: 00:00:00.25
# Mc/sec: 591.31
//
Query:       MMETSP1137-20121227|9003_1  [L=160]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (160 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       143  (0.034861); expected 82.0 (0.02)
Passed bias filter:                      140  (0.0341297); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.15s 00:00:00.32 Elapsed: 00:00:00.31
# Mc/sec: 681.23
//
Query:       MMETSP1137-20121227|9004_1  [L=163]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (163 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       237  (0.0577767); expected 82.0 (0.02)
Passed bias filter:                      121  (0.0294978); expected 82.0 (0.02)
Passed Vit filter:                        19  (0.00463189); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.18s 00:00:00.45 Elapsed: 00:00:00.36
# Mc/sec: 597.62
//
Query:       MMETSP1137-20121227|9005_1  [L=202]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.3e-09   33.6   0.0    9.9e-09   33.2   0.0    1.2  1  TIGR02072 BioC: biotin biosynthesis protein BioC
    7.4e-06   23.2   0.0      8e-06   23.1   0.0    1.2  1  TIGR03438 TIGR03438: probable methyltransferase
    8.3e-05   19.1   0.0    0.00011   18.7   0.0    1.1  1  TIGR04074 bacter_Hen1: 3' terminal RNA ribose 2'-O-methyltransferase Hen1
    0.00088   16.5   0.0     0.0011   16.2   0.0    1.2  1  TIGR01983 UbiG: 3-demethylubiquinone-9 3-O-methyltransferase


Domain annotation for each model (and alignments):
>> TIGR02072  BioC: biotin biosynthesis protein BioC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.2   0.0   9.6e-12   9.9e-09      27     112 ..      51     145 ..      31     159 .. 0.86

  Alignments for each domain:
  == domain 1    score: 33.2 bits;  conditional E-value: 9.6e-12
   TIGR02072  27 lkekr..kfepakvLdiGcGtGiltrallkrfpqaelialDiseemleqakkkls.......nvqficgdieklplekksfDlivSnlalQWldd 112
                  +e++   fe+a+v++ G G G+l + ll ++++ ++i +Di+e +l+ a ++l+       ++  + g++++++l   ++D+ vS +++Q + +
  MMETSP1137-20121227|9005_1  51 SQEQYgnLFENATVMEYGIGGGLLGKLLLTKYNARHYIGVDIAERQLKAAAERLGaccrhkySMVQVNGSLNQADLKPFRIDVFVSQAVMQHFPS 145
                 44544568999***********************************************998877788999*********************7765 PP

>> TIGR03438  TIGR03438: probable methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.1   0.0   7.8e-09     8e-06      46     119 ..      44     119 ..      39     193 .. 0.83

  Alignments for each domain:
  == domain 1    score: 23.1 bits;  conditional E-value: 7.8e-09
   TIGR03438  46 EaaileeaakeiaeavgeeaelvelGsGsseKvrlLLdaleeaaryvpidisaeaLkesaeal....aadypelevkg 119
                 Ea+ l++++++  +  ++ a+++e+G+G     +lLL++++ a++y+ +di+++ Lk++ae+l    +++y  ++v+g
  MMETSP1137-20121227|9005_1  44 EAHWLNHSQEQYGNLFEN-ATVMEYGIGGGLLGKLLLTKYN-ARHYIGVDIAERQLKAAAERLgaccRHKYSMVQVNG 119
                 667777777777777777.9*********************.9******************99433345666666665 PP

>> TIGR04074  bacter_Hen1: 3' terminal RNA ribose 2'-O-methyltransferase Hen1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.0     1e-07   0.00011     283     367 ..      61     142 ..      54     159 .. 0.79

  Alignments for each domain:
  == domain 1    score: 18.7 bits;  conditional E-value: 1e-07
   TIGR04074 283 arsvlDlGcGegkLlkaLlaekqfekivgvdvsareLekakrrlkldrlsekqrervellqssltYrDkrlkgfdaavlvevieh 367
                   +v++ G G g L k Ll++ ++++ +gvd++ r+L++a++rl      ++ +  +  +++sl   D +   +d  v   v+ h
  MMETSP1137-20121227|9005_1  61 NATVMEYGIGGGLLGKLLLTKYNARHYIGVDIAERQLKAAAERLG--ACCRH-KYSMVQVNGSLNQADLKPFRIDVFVSQAVMQH 142
                 5689****************************************6..33333.33444456777777776666666666666666 PP

>> TIGR01983  UbiG: 3-demethylubiquinone-9 3-O-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0     1e-06    0.0011      45     131 ..      54     145 ..      25     174 .. 0.76

  Alignments for each domain:
  == domain 1    score: 16.2 bits;  conditional E-value: 1e-06
   TIGR01983  45 e..kkleglkvlDvGcGgGllsesl.arlgae.vtgiDlseelievAklhakkdplkkieyelksveelaeee...kesfDvvlamEvlEHvad 131
                 +  + +e+ +v++ G GgGll + l ++ +a   +g+D++e ++++A +   +      +y + +v+   +++     + Dv ++  v+ H ++
  MMETSP1137-20121227|9005_1  54 QygNLFENATVMEYGIGGGLLGKLLlTKYNARhYIGVDIAERQLKAAAERLGACCR--HKYSMVQVNGSLNQAdlkPFRIDVFVSQAVMQHFPS 145
                 134678899************9976266666679************9887665544..478888887655544222345689999999999765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (202 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       107  (0.0260848); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.22u 0.16s 00:00:00.38 Elapsed: 00:00:00.38
# Mc/sec: 701.63
//
Query:       MMETSP1137-20121227|9007_1  [L=355]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (355 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        53  (0.0129205); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.12s 00:00:00.37 Elapsed: 00:00:00.53
# Mc/sec: 884.08
//
Query:       MMETSP1137-20121227|9008_1  [L=242]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.8e-78  257.0   0.4    1.1e-77  256.7   0.3    1.1  1  TIGR01957 nuoB_fam: NADH-quinone oxidoreductase, B subunit
    3.1e-05   21.6   0.1    0.00013   19.6   0.1    1.8  1  TIGR03294 FrhG: coenzyme F420 hydrogenase, subunit gamma


Domain annotation for each model (and alignments):
>> TIGR01957  nuoB_fam: NADH-quinone oxidoreductase, B subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  256.7   0.3   5.5e-81   1.1e-77       3     145 .]      90     231 ..      88     231 .. 0.98

  Alignments for each domain:
  == domain 1    score: 256.7 bits;  conditional E-value: 5.5e-81
   TIGR01957   3 lltkvdkllnwarssslwpltfglaccaiemmataasrydldrfgavvfrasPrqadvlivaGtvtkkmapvlrrlydqmpePkyvismGacansGGlfkesysvvkgvdrivPvdvyiPGcpPrpeallegllklqkkikee 145
                 ++t++d++ nwar+ss+wp+tfglacca+emm++aasryd+drfg ++frasPrq+dv+ivaGt+t+kmap+lr++ydqmpeP+yv+smG+can+GG++++sysvv+g+drivPvd+y+PGcpP++eal++gll+lqkki++e
  MMETSP1137-20121227|9008_1  90 VMTQFDRVANWARKSSMWPMTFGLACCAVEMMHAAASRYDMDRFG-ILFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGLLQLQKKINRE 231
                 799******************************************.9*********************************************************************************************975 PP

>> TIGR03294  FrhG: coenzyme F420 hydrogenase, subunit gamma
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.1   6.2e-08   0.00013      50     135 ..     143     219 ..     136     236 .. 0.83

  Alignments for each domain:
  == domain 1    score: 19.6 bits;  conditional E-value: 6.2e-08
   TIGR03294  50 eldvalveGsvclqdehsleevkelrekakvvvalGacaatGnitrysrGgqlakpshesfvpltdvidvdlaipGcppspeaikk 135
                 + dv +v G++  +   +l++v +   + + vv++G+ca  G+   ys                  ++ vd+++pGcpp+ ea+  
  MMETSP1137-20121227|9008_1 143 QSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVVSMGSCANGGGYYHYSYS---------VVRGCDRIVPVDIYVPGCPPTAEALIY 219
                 579999999999999999****999999************9999999854.........4445667889***********998654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (242 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        92  (0.0224281); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.23u 0.17s 00:00:00.40 Elapsed: 00:00:00.53
# Mc/sec: 602.67
//
Query:       MMETSP1137-20121227|9009_1  [L=501]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (501 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        88  (0.0214529); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.15s 00:00:00.48 Elapsed: 00:00:00.44
# Mc/sec: 1502.88
//
Query:       MMETSP1137-20121227|9010_1  [L=173]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (173 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        60  (0.014627); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.16s 00:00:00.34 Elapsed: 00:00:00.45
# Mc/sec: 507.42
//
Query:       MMETSP1137-20121227|9011_1  [L=486]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.7e-22   76.3   0.4    1.1e-21   74.8   0.3    1.7  1  TIGR01389 recQ: ATP-dependent DNA helicase RecQ
    2.6e-20   70.5   0.3    1.6e-19   67.8   0.2    1.9  1  TIGR00614 recQ_fam: ATP-dependent DNA helicase, RecQ family
    6.7e-18   61.6   0.0    8.2e-18   61.3   0.0    1.1  1  TIGR04121 DEXH_lig_assoc: DEXH box helicase, DNA ligase-associated
    3.9e-13   47.1   0.8    1.1e-11   42.3   0.3    2.0  2  TIGR01587 cas3_core: CRISPR-associated helicase Cas3
    6.1e-12   42.8   0.0    7.4e-09   32.7   0.0    2.2  2  TIGR00643 recG: ATP-dependent DNA helicase RecG
    7.1e-10   35.6   0.0    0.00016   17.9   0.0    2.2  2  TIGR03817 DECH_helic: helicase/secretion neighborhood putative DEAH-box helicase
    3.4e-07   26.7   0.1    6.6e-07   25.7   0.0    1.5  2  TIGR00631 uvrb: excinuclease ABC subunit B
    8.3e-06   22.2   0.1    1.7e-05   21.1   0.0    1.5  2  TIGR00580 mfd: transcription-repair coupling factor
    4.2e-05   19.1   0.0      0.005   12.2   0.0    2.2  2  TIGR01054 rgy: reverse gyrase
    0.00012   18.7   0.1      0.034   10.5   0.0    2.3  2  TIGR00595 priA: primosomal protein N'
      0.002   14.3   0.0      0.034   10.2   0.0    2.0  2  TIGR01970 DEAH_box_HrpB: ATP-dependent helicase HrpB
     0.0052   13.6   0.2      0.096    9.5   0.0    2.3  2  TIGR04095 dnd_restrict_1: DNA phosphorothioation system restriction enzyme
     0.0068   13.4   0.1       0.12    9.3   0.0    2.1  2  TIGR03158 cas3_cyano: CRISPR-associated helicase Cas3, subtype CYANO


Domain annotation for each model (and alignments):
>> TIGR01389  recQ: ATP-dependent DNA helicase RecQ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.8   0.3   3.3e-24   1.1e-21     104     369 ..     141     405 ..      31     417 .. 0.67

  Alignments for each domain:
  == domain 1    score: 74.8 bits;  conditional E-value: 3.3e-24
   TIGR01389 104 lklLYvaPerleqdkflellerlkiallavDeahCvsqWGhDFRpeYkrlgelaerfpkap.vialtatadae....vredivekLelkdaaefvssfdRenlafsvvkkenkkkqlleylkkereksGiiYassRkkveelaeaLeskgiealaYhaGlskkvRaeaqekFleddvkvvvatvaFGmGidksdvRfvihldlPknlesyyqeaGRaGRDGlkaeaillyseaDlallkrlieeseasedrkqieskkLdellayaetkkC 369
                 ++ +  +P r+     ++ l+   i++l +Dea  +   G  F+    ++  +   +p a  v+ + at  +e    +r+ +++ +++  ++   +    ++ +  v+++e k + l +   + + +  +i+++++kkv+ l++++++ ++++   h+ + +k+R+    +F   d +v++at  +G Gid  +v  vi +dlP+n e y    GR+GR G+k  ai + +++D+ +l+ + +  +++ d   ++ + L  l+a++ +++C
  MMETSP1137-20121227|9011_1 141 VHAVSGTPGRVFDMIRRRNLRTRAIKMLVIDEADEMLSKG--FKE---QIYDIYRYLPPATqVVLISATLPHEilemTRKFMTDPVRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKKKVDWLTNKMRQANFTVSSMHGDMPQKERDAIMAEFRSGDSRVLIATDVWGRGIDVQQVSLVICYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIRILRDIEQYYSTQIDEMPMNVADL-XLSAVLAAEEC 405
                 4555556777777777777888888888888887655544..443...344444444443334444555443311114444444444444444444444456677788888888999999999999999*************************************************************************************************************987666666666666666555.35666666666 PP

>> TIGR00614  recQ_fam: ATP-dependent DNA helicase, RecQ family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.8   0.2   5.2e-22   1.6e-19       9     341 ..      42     376 ..      36     425 .. 0.63

  Alignments for each domain:
  == domain 1    score: 67.8 bits;  conditional E-value: 5.2e-22
   TIGR00614   9 lesfrpvqlevinavlegrdalvvmatGgGksLCyqlpav..v....sdgltlvisPLisLmeD.qvlqLkasdisatlLnsaqskeeakevladl..kdgklkllYvtPekvsksksllqkleerkkltliavDeahCisqWGhDfRsdykalgsLkqklPsvpviaLtatasssvreDilklLk......lkkpqvtitsfdRpnlkyeveekkskiledllkfivkefkgksGiiYClsrkkveqvaaeLqkkglaaaaYhagleesarkevqkkflrdeiqvvvatvafGmGinkpdvRfvihyslpksiesYYqesGRaGRDglksecvlfyapaDvallrrl 341
                 +e+    q+++i  +l+grd++     G Gk   +    +  +     +  +l +sP + L e  q   L   d  +    +       k++ +d+   d+ ++ +  tP +v   ++  ++l  ++ + ++++Dea  +   G  f+++    ++ +   P   v+ ++at  +++ e   k ++      +k+ + t  +  +  +  e ee k + l dl   ++     +  +i+C+++kkv+ +++++++ + +  + h ++ +++r+ +  +f   + +v++at  +G Gi+  +v  vi y+lp + e Y   +GR+GR g k  ++ f +  D+ +lr +
  MMETSP1137-20121227|9011_1  42 FEKPSAIQQRAIMPILKGRDTIAQAQSGTGKTTIFCAGVLqcLdtsqRETQALALSPTRELAEQtQKVMLALGDYMSVQCHACI---GGKSIGEDIrrLDAGVHAVSGTPGRVFDMIR-RRNL-RTRAIKMLVIDEADEMLSKG--FKEQIY--DIYRYLPPATQVVLISATLPHEILEMTRKFMTdpvrilVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLT----ITQAVIFCNTKKKVDWLTNKMRQANFTVSSMHGDMPQKERDAIMAEFRSGDSRVLIATDVWGRGIDVQQVSLVICYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIRILRDI 376
                 555556666666666666666666666666664443222210111113344566666666655312222222222222111111...1233555553234445555556666654422.2333.55666667777776555444..444332..23333445555666666666555443322221111111344444444444444444444444455555555554....44569*********************************************************************************************************999986 PP

>> TIGR04121  DEXH_lig_assoc: DEXH box helicase, DNA ligase-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.3   0.0   2.6e-20   8.2e-18      14     361 ..      45     370 ..      38     424 .. 0.84

  Alignments for each domain:
  == domain 1    score: 61.3 bits;  conditional E-value: 2.6e-20
   TIGR04121  14 prafQkevleaaeegesglliapTGaGKTlavflpslielaakekpkkglkvlyitPLkaLakdieraleapieelgleirvelrtGDtssserarqrkkppdiLltTpEslaLllsskdaeklfkdlravvvDElHeLlgskRGdlleLaLarLrrlapelrvvglsATvgnleeaaevllgeekeekaklvkakekkalevesllpeeeeklPwaGhlglkaleevleeikkarttlvFtNtRsqaEllfqaLleaneelaleialhHgsldkeqRekveaalkagklravvcTssLdLGvDfgdvdlviqvGspkgvaRllQRiGRsnHrldepskillvptnal 361
                 p a Q++++  + +g++++ +a  G+GKT  +f + +++++  +++++  ++l ++P + La+++++ + a  + ++++++  +  G  s  e  r+ ++  +++  Tp  +  ++ +++ ++  + ++++v+DE  e+l++   +++       r l p+ +vv +sAT+ +  e+ e+  +  ++    lvk +e   + +++ + + +e+  w+      +l +++++++  +++++F+Nt+++ + l +++ +an      ++  Hg + +++R+ + a++++g+ r++++T     G+D ++v lvi    p +    + RiGRs+    +   i +v ++ +
  MMETSP1137-20121227|9011_1  45 PSAIQQRAIMPILKGRDTIAQAQSGTGKTT-IFCAGVLQCL--DTSQRETQALALSPTRELAEQTQKVMLALGDYMSVQCHACI--GGKSIGEDIRRLDAGVHAVSGTPGRVFDMIRRRNLRT--RAIKMLVIDEADEMLSKGFKEQI---YDIYRYLPPATQVVLISATLPH--EILEMTRKFMTDPVRILVKRDELTLEGIKQFFVA-VEREEWK----FDTLCDLYDTLTI-TQAVIFCNTKKKVDWLTNKMRQANFT----VSSMHGDMPQKERDAIMAEFRSGDSRVLIATDVWGRGIDVQQVSLVICYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDI 370
                 67889999*********************6.6677777777..57778899*********************999999887665..888888999999999***********99999888765..689***********987555554...355688999***********65..3333333333333468999988888888888888.9999998....5566677777765.45799********9988887777665....8899*************************************************************977777677777776655 PP

>> TIGR01587  cas3_core: CRISPR-associated helicase Cas3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.0      0.03       9.5       3      51 ..      63     112 ..      61     133 .. 0.78
   2 !   42.3   0.3   3.4e-14   1.1e-11     127     335 ..     167     376 ..     150     393 .. 0.79

  Alignments for each domain:
  == domain 1    score: 3.0 bits;  conditional E-value: 0.03
   TIGR01587   3 vieAPtGyGKteaallwalklikkqkadkvifal.Ptratanamyerlke 51 
                 + +A  G GKt++  +  l+ ++ ++++   +al Ptr +a+  ++ + +
  MMETSP1137-20121227|9011_1  63 IAQAQSGTGKTTIFCAGVLQCLDTSQRETQALALsPTRELAEQTQKVMLA 112
                 678999*******9999999777776666666655***999987766654 PP

  == domain 2    score: 42.3 bits;  conditional E-value: 3.4e-14
   TIGR01587 127 vliiDEvhayeey.tkalllallevlkdvdvkillmsAtlpkllkeylekielveenealdlkeekrfenqrisliekdkleeisslerllealkkekkvliivNtVdrAqelyqklkekapeeeiiLlHsrftekdrekkEaellkelkknekfvivaTQviEvslDis.vdvlitelapids..LiQRlGRlaRygrkir.....enrevyvltel 335
                 +l+iDE++ + ++  k+ +  +   l     +++l+sAtlp  + e+ +k   +  + +++++e     ++++ + +++ + ++ +l +l + l    +++i++Nt ++   l +k++  +  + +  +H+ + +k+r       ++e+++ +++v++aT v   ++D+  v ++i    p ++   i R+GR  R+grk       ++ ++ +l+++
  MMETSP1137-20121227|9011_1 167 MLVIDEADEMLSKgFKEQIYDIYRYL-PPATQVVLISATLPHEILEMTRKFMTDPVRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL-TITQAVIFCNTKKKVDWLTNKMRQAN--FTVSSMHGDMPQKERDAI----MAEFRSGDSRVLIATDVWGRGIDVQqVSLVICYDLPNNRelYIHRIGRSGRFGRKGVainfvKSDDIRILRDI 376
                 69999998655540555565555544.5567899*******999999999999999********9999999**9*************9887766.578999*****************444..569********9999877....9***********************73666677766765332799****9999998442223445555555555 PP

>> TIGR00643  recG: ATP-dependent DNA helicase RecG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.2   0.0   0.00061      0.19     262     313 ..      65     119 ..      54     190 .. 0.74
   2 !   32.7   0.0   2.3e-11   7.4e-09     475     534 ..     276     337 ..     261     367 .. 0.85

  Alignments for each domain:
  == domain 1    score: 8.2 bits;  conditional E-value: 0.00061
   TIGR00643 262 qGdVGsGKTvV...avlallaviesGyqvalmaPTeiLAeQhyeklrelleplgi 313
                 q + G+GKT +    vl +l + +   q++ + PT  LAeQ  + +  l + +++
  MMETSP1137-20121227|9011_1  65 QAQSGTGKTTIfcaGVLQCLDTSQRETQALALSPTRELAEQTQKVMLALGDYMSV 119
                 6678*****983324677777778889**************87766655444444 PP

  == domain 2    score: 32.7 bits;  conditional E-value: 2.3e-11
   TIGR00643 475 elkkaf..pklnvallhgrlksdekeevleeFrekevdiLvaTtviEvGvdvPnatvmvied 534
                  l++++  ++++v  +hg ++++e++++++eFr+++  +L+aT v   G+dv ++++++ +d
  MMETSP1137-20121227|9011_1 276 WLTNKMrqANFTVSSMHGDMPQKERDAIMAEFRSGDSRVLIATDVWGRGIDVQQVSLVICYD 337
                 455555447899999*****************************************999876 PP

>> TIGR03817  DECH_helic: helicase/secretion neighborhood putative DEAH-box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   2.7e-06   0.00084      23     109 ..      31     119 ..      27     176 .. 0.81
   2 !   17.9   0.0   5.1e-07   0.00016     301     385 ..     283     368 ..     262     380 .. 0.82

  Alignments for each domain:
  == domain 1    score: 15.5 bits;  conditional E-value: 2.7e-06
   TIGR03817  23 pdvvaaleaaGieapwqhqaraaelahaGehvvvatgtasGkslayllPvlsalaed.pratalylaPtkalaadqlravkelee.rdv 109
                 +++ + + a G e+p + q ra     +G++ +  +   +Gk+  +   vl+ l ++ ++++al l+Pt+ la+   +++ +l +  +v
  MMETSP1137-20121227|9011_1  31 DELLRGIYAYGFEKPSAIQQRAIMPILKGRDTIAQAQSGTGKTTIFCAGVLQCLDTSqRETQALALSPTRELAEQTQKVMLALGDyMSV 119
                 678888999*********************************************98736788***********9988888888764333 PP

  == domain 2    score: 17.9 bits;  conditional E-value: 5.1e-07
   TIGR03817 301 elaervaayraGylaedrreleralkdGellgvaatnalelGvdisGldavviaGfPGtvaslwqqaGraGrrgqdalvv.lvard 385
                 +    v++  +   + +r ++ +++++G+ + + at+    G+d+  +  v+    P  +  +  ++Gr+Gr g++ +++ +v +d
  MMETSP1137-20121227|9011_1 283 QANFTVSSMHGDMPQKERDAIMAEFRSGDSRVLIATDVWGRGIDVQQVSLVICYDLPNNRELYIHRIGRSGRFGRKGVAInFVKSD 368
                 3344577777777778999*********************************************************9998244444 PP

>> TIGR00631  uvrb: excinuclease ABC subunit B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0       1.2   3.8e+02     361     374 ..      40      53 ..      37     107 .. 0.63
   2 !   25.7   0.0   2.1e-09   6.6e-07     445     541 ..     263     354 ..     193     371 .. 0.81

  Alignments for each domain:
  == domain 1    score: -3.2 bits;  conditional E-value: 1.2
   TIGR00631 361 yGfrLPsaldnrPl 374
                 yGf  Psa++ r +
  MMETSP1137-20121227|9011_1  40 YGFEKPSAIQQRAI 53 
                 55666666555543 PP

  == domain 2    score: 25.7 bits;  conditional E-value: 2.1e-09
   TIGR00631 445 rvlvttltkkmaedltdylkelgikvkylhseidtlerveiirdLrkgefdvlvGinLLreGlDlPevslvailDadkeGflrsersLiqtiGraar 541
                 ++++   tkk  + lt+ +++++  v  +h ++   er  i+ ++r g+  vl+  ++   G+D+ +vslv   D        +++  i  iGr+ r
  MMETSP1137-20121227|9011_1 263 QAVIFCNTKKKVDWLTNKMRQANFTVSSMHGDMPQKERDAIMAEFRSGDSRVLIATDVWGRGIDVQQVSLVICYDL-----PNNRELYIHRIGRSGR 354
                 56778889***************************************************************99984.....3344445666666665 PP

>> TIGR00580  mfd: transcription-repair coupling factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.1       1.3   4.1e+02     480     513 ..      69     105 ..      66     109 .. 0.82
   2 !   21.1   0.0   5.5e-08   1.7e-05     687     759 ..     288     359 ..     269     370 .. 0.79

  Alignments for each domain:
  == domain 1    score: -3.3 bits;  conditional E-value: 1.3
   TIGR00580 480 GfGKTEvamrAafkavldg...kQvavlvPTTlLaeQ 513
                 G GKT +    +++ ++      Q   l+PT  LaeQ
  MMETSP1137-20121227|9011_1  69 GTGKTTIFCAGVLQCLDTSqreTQALALSPTRELAEQ 105
                 77999999988888876555669999******99999 PP

  == domain 2    score: 21.1 bits;  conditional E-value: 5.5e-08
   TIGR00580 687 iaiaHgqmeeeeleevmleFlkkefdvLvcTtiiEsGidipnaNTiiierAdkfGlaqLyQLr.GRvGRskkka 759
                 +  +Hg m ++e + +m eF ++++ vL++T +   Gid+ ++  +i  +  +    +Ly  r GR GR  +k+
  MMETSP1137-20121227|9011_1 288 VSSMHGDMPQKERDAIMAEFRSGDSRVLIATDVWGRGIDVQQVSLVICYDLPNN--RELYIHRiGRSGRFGRKG 359
                 6678**************************************998887654443..455554446666666555 PP

>> TIGR01054  rgy: reverse gyrase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.7   0.0    0.0029      0.92      80     148 ..      44     115 ..      31     180 .. 0.82
   2 !   12.2   0.0   1.6e-05     0.005     137     189 ..     268     321 ..     258     337 .. 0.85

  Alignments for each domain:
  == domain 1    score: 4.7 bits;  conditional E-value: 0.0029
   TIGR01054  80 ellsiqkmWakrvlknksFaivaPtGvGkttf...glvmslflakkgkrvyiilPttlLvkqvaeklsslae 148
                 ++ +iq+     +lk++   + a  G Gktt+   g++  l   ++  +++++ Pt+ L++q+++ +  l +
  MMETSP1137-20121227|9011_1  44 KPSAIQQRAIMPILKGRDTIAQAQSGTGKTTIfcaGVLQCLDTSQRETQALALSPTRELAEQTQKVMLALGD 115
                 5778899999999999999999********9745567777778888999**************987766655 PP

  == domain 2    score: 12.2 bits;  conditional E-value: 1.6e-05
   TIGR01054 137 kqvaeklsslaeke.glnirvvayhsklstkekkevkeriengdfdilittsaf 189
                  ++ +k++ l++k  + n +v  +h+ +++ke+  ++ ++++gd ++li+t  +
  MMETSP1137-20121227|9011_1 268 CNTKKKVDWLTNKMrQANFTVSSMHGDMPQKERDAIMAEFRSGDSRVLIATDVW 321
                 57889999999886245666999****************************865 PP

>> TIGR00595  priA: primosomal protein N'
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.2   0.0    0.0022      0.71       6      59 ..      68     124 ..      64     270 .. 0.77
   2 !   10.5   0.0   0.00011     0.034     299     339 ..     295     335 ..     269     361 .. 0.82

  Alignments for each domain:
  == domain 1    score: 6.2 bits;  conditional E-value: 0.0022
   TIGR00595   6 tGSGKtEvylkvie...kvlakgksvlvLvPEiaLtaqllkrlkerfgsevavlhsk 59 
                 +G GKt ++   +    ++ +++ ++l L P   L+ q++k + +  +   ++ h  
  MMETSP1137-20121227|9011_1  68 SGTGKTTIFCAGVLqclDTSQRETQALALSPTRELAEQTQKVMLALGDYMSVQCHAC 124
                 79*******876550115667899**************9987655444444555555 PP

  == domain 2    score: 10.5 bits;  conditional E-value: 0.00011
   TIGR00595 299 rrkkalealleqfaagkidiliGtqmiaKGldfpkvtlvgv 339
                   +k+ +a++++f++g+ ++li t +  +G+d ++v+lv  
  MMETSP1137-20121227|9011_1 295 MPQKERDAIMAEFRSGDSRVLIATDVWGRGIDVQQVSLVIC 335
                 3466779******************************9864 PP

>> TIGR01970  DEAH_box_HrpB: ATP-dependent helicase HrpB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.0     0.042        13      19      61 ..      61     105 ..      51     133 .. 0.78
   2 !   10.2   0.0   0.00011     0.034     226     287 ..     273     334 ..     262     345 .. 0.91

  Alignments for each domain:
  == domain 1    score: 1.7 bits;  conditional E-value: 0.042
   TIGR01970  19 qvvLeappGaGkstalP...LalLdapwligrkiilLePrrlaara 61 
                 +++ +a +G Gk+t +    L+ Ld++ + + + + L P r  a +
  MMETSP1137-20121227|9011_1  61 DTIAQAQSGTGKTTIFCagvLQCLDTS-QRETQALALSPTRELAEQ 105
                 67899*********9964447888888.777788888887755444 PP

  == domain 2    score: 10.2 bits;  conditional E-value: 0.00011
   TIGR01970 226 veeaLaerldasevelcPLyGeleleaqdraikpaaaGrrkvvLatniaetsltieGvrvvi 287
                   ++L++++++++ ++  ++G+++ +++d++++   +G  +v +at++    + ++ v +vi
  MMETSP1137-20121227|9011_1 273 KVDWLTNKMRQANFTVSSMHGDMPQKERDAIMAEFRSGDSRVLIATDVWGRGIDVQQVSLVI 334
                 55799***************************************************999998 PP

>> TIGR04095  dnd_restrict_1: DNA phosphorothioation system restriction enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.1     0.059        19      25      74 ..      59     110 ..      44     191 .. 0.76
   2 !    9.5   0.0    0.0003     0.096     299     379 ..     272     351 ..     251     363 .. 0.82

  Alignments for each domain:
  == domain 1    score: 1.9 bits;  conditional E-value: 0.059
   TIGR04095  25 grG.ilkmatGtGktltaLalvskl.aekikslvvvvvvPykhLveqWakea 74 
                 gr  i +   GtGkt    a v +  + ++++   + + P ++L+eq +k +
  MMETSP1137-20121227|9011_1  59 GRDtIAQAQSGTGKTTIFCAGVLQClDTSQRETQALALSPTRELAEQTQKVM 110
                 4440445568999998877766665366667778889999999999977655 PP

  == domain 2    score: 9.5 bits;  conditional E-value: 0.0003
   TIGR04095 299 rqidevvkllgeelglrvktftaeeskeeReellkqfesgelqalvairCLDeGvDvPairtayiLasssnPrqFiqRRGR 379
                 +++d +++ + ++ +++v++     +++eR+ ++ +f sg+  +l+a      G+Dv ++   +     +n   +i R GR
  MMETSP1137-20121227|9011_1 272 KKVDWLTNKM-RQANFTVSSMHGDMPQKERDAIMAEFRSGDSRVLIATDVWGRGIDVQQVSLVICYDLPNNRELYIHRIGR 351
                 4555554444.456778888888899********************************99988887778888889999888 PP

>> TIGR03158  cas3_cyano: CRISPR-associated helicase Cas3, subtype CYANO
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.3   0.0   0.00037      0.12      18      60 ..      63     111 ..      49     126 .. 0.69
   2 ?    1.9   0.0     0.066        21     267     355 ..     256     351 ..     233     353 .. 0.70

  Alignments for each domain:
  == domain 1    score: 9.3 bits;  conditional E-value: 0.00037
   TIGR03158  18 lntAptGaGKtlaalvevl......seeldtialyPtNaLiedqekaik 60 
                 + +A  G+GKt    + vl      + e +++al Pt +L+e+ +k + 
  MMETSP1137-20121227|9011_1  63 IAQAQSGTGKTTIFCAGVLqcldtsQRETQALALSPTRELAEQTQKVML 111
                 56899******86554444111111455666**********99877654 PP

  == domain 2    score: 1.9 bits;  conditional E-value: 0.066
   TIGR03158 267 fdqlsgergaiildslaevkrlsellreqelglqvgritGlakkkeke......ralsfdillgtsavdvGvdFktdfliF..s.asdaaeFlqRlGR 355
                 +d l+ ++++i  ++ ++v+ l++ +r+++ +  v    G  ++ke++      r+    +l++t     G+d ++  l+   +  +++  ++ R+GR
  MMETSP1137-20121227|9011_1 256 YDTLTITQAVIFCNTKKKVDWLTNKMRQANFT--VSSMHGDMPQKERDaimaefRSGDSRVLIATDVWGRGIDVQQVSLVIcyDlPNNRELYIHRIGR 351
                 556666788899999************88877..9999999999998822222233345677777777777777766443311223455556666666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (486 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       157  (0.038274); expected 82.0 (0.02)
Passed bias filter:                      139  (0.0338859); expected 82.0 (0.02)
Passed Vit filter:                        23  (0.00560702); expected 4.1 (0.001)
Passed Fwd filter:                        13  (0.00316919); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.66u 0.21s 00:00:00.87 Elapsed: 00:00:00.92
# Mc/sec: 697.25
//
Query:       MMETSP1137-20121227|9012_1  [L=653]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.2e-38  129.0   0.0    5.7e-38  128.5   0.0    1.1  1  TIGR00717 rpsA: ribosomal protein S1
      4e-14   49.8   0.1    4.5e-13   46.3   0.1    2.2  2  TIGR03591 polynuc_phos: polyribonucleotide nucleotidyltransferase
     0.0028   15.1   0.0     0.0047   14.4   0.0    1.4  1  TIGR00448 rpoE: DNA-directed RNA polymerase
     0.0032   13.6   0.2     0.0061   12.7   0.1    1.4  1  TIGR02063 RNase_R: ribonuclease R
  ------ inclusion threshold ------
      0.017   11.9   0.0       0.09    9.6   0.0    2.0  2  TIGR01953 NusA: transcription termination factor NusA


Domain annotation for each model (and alignments):
>> TIGR00717  rpsA: ribosomal protein S1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  128.5   0.0   6.9e-41   5.7e-38      16     271 ..     131     383 ..     117     395 .. 0.91

  Alignments for each domain:
  == domain 1    score: 128.5 bits;  conditional E-value: 6.9e-41
   TIGR00717  16 tkegsvvkGtVveinkdtvlVdvGlKsEgripveefedaq.....lelqvgdevevvlervedregetvlsrekaqrkeakiklekaeeeksiveGkivrkvKgGfiVdleGveaFLpgSqvdvkkvkdleeligkelkfkilkldkkrenivvsrralleeerskkreelleklkegeevkGvVknitdfgafvdlggvdgllhitdlswkrvkhPseivevgdevkvkvikvDkekkrislslkqlkedPWeeiekkfk 271
                  ++g    G+V+  + + +lVd+G+Ks + +++ e   ++     + ++ g + +  +   ed++g+ +lsr++    ea+    +   e++ ve ++v  ++gG +  ++G++aFLpgS+    +   +eel+g +l +k l +d++++ +vvs+r+ l        ++ +++++ g++++GvV  + ++gaf+d+gg+ gllhi+++s  ++ + + ++ +g+ +k +vi+ Dk k+r++ls k l+ +P + ++++ k
  MMETSP1137-20121227|9012_1 131 FERGDTCDGVVLGFEPNGALVDIGVKSSAYVTLTESAIEKpsrpeEVFELGGSYTFQIISREDENGQLMLSRRRILYDEAWGAAAEILAEDKSVEATVVAVNRGGAMMSVNGLRAFLPGSHYLPGQ-TPPEELVGSKLSVKLLDVDRDNNRLVVSHRKALV-------DQTIKNMSVGSVLEGVVTAVKPYGAFIDVGGMSGLLHISQISCDHISNVESVLPLGKAIKCMVISQDKGKGRVALSTKTLEAEPGDMLKNQDK 383
                 45588999**********************99987544433577778999***********************************************************************97665.789**************************99885.......6778899*****************************************************************************999888755 PP

>> TIGR03591  polynuc_phos: polyribonucleotide nucleotidyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.0     0.035        29     616     688 ..     131     204 ..     112     205 .. 0.90
   2 !   46.3   0.1   5.5e-16   4.5e-13     603     688 ..     284     369 ..     268     370 .. 0.92

  Alignments for each domain:
  == domain 1    score: 0.7 bits;  conditional E-value: 0.035
   TIGR03591 616 vevgkvyegkvvkiadfgafvellpgkdglvhiSelaeervekvedvlkegdevkvkvlei.dkkgrvklsrka 688
                  e g++ +g v   ++ ga+v++  +  + v + e a e+ ++ e+v++ g + + ++++  d++g++ lsr++
  MMETSP1137-20121227|9012_1 131 FERGDTCDGVVLGFEPNGALVDIGVKSSAYVTLTESAIEKPSRPEEVFELGGSYTFQIISReDENGQLMLSRRR 204
                 68899999************************************************998762669999999986 PP

  == domain 2    score: 46.3 bits;  conditional E-value: 5.5e-16
   TIGR03591 603 ekakklieeitaevevgkvyegkvvkiadfgafvellpgkdglvhiSelaeervekvedvlkegdevkvkvleidk.kgrvklsrka 688
                 ++ k+l+++ ++++ vg+v eg v+ ++++gaf+++ +g  gl+hiS+++ +++++ve+vl  g+ +k  v++ dk kgrv ls+k+
  MMETSP1137-20121227|9012_1 284 SHRKALVDQTIKNMSVGSVLEGVVTAVKPYGAFIDV-GGMSGLLHISQISCDHISNVESVLPLGKAIKCMVISQDKgKGRVALSTKT 369
                 556788999*************************97.799***********************************989******986 PP

>> TIGR00448  rpoE: DNA-directed RNA polymerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.0   5.7e-06    0.0047      82     119 ..     300     337 ..     289     394 .. 0.88

  Alignments for each domain:
  == domain 1    score: 14.4 bits;  conditional E-value: 5.7e-06
   TIGR00448  82 qeiveGevieivefGafvslGplddllhvsqvlddyvv 119
                 + ++eG v  +  +Gaf+ +G + +llh+sq+  d ++
  MMETSP1137-20121227|9012_1 300 GSVLEGVVTAVKPYGAFIDVGGMSGLLHISQISCDHIS 337
                 6799*****************************99987 PP

>> TIGR02063  RNase_R: ribonuclease R
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.7   0.1   7.4e-06    0.0061     627     666 ..     298     335 ..     288     366 .. 0.90

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 7.4e-06
   TIGR02063 627 kiGeefegvissvtsfGlFveLeentieGLvhissLkddy 666
                  +G+++egv+++v  +G F+ +    ++GL his+++ d 
  MMETSP1137-20121227|9012_1 298 SVGSVLEGVVTAVKPYGAFIDVGG--MSGLLHISQISCDH 335
                 69********************99..9********98775 PP

>> TIGR01953  NusA: transcription termination factor NusA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.0      0.13   1.1e+02     132     196 ..     134     203 ..     119     205 .. 0.67
   2 ?    9.6   0.0   0.00011      0.09     131     218 ..     220     308 ..     218     332 .. 0.88

  Alignments for each domain:
  == domain 1    score: -0.6 bits;  conditional E-value: 0.13
   TIGR01953 132 geiisgkvervkkeevlvel........gkteallpkkeqipgekfklgdkikvlvkevkkekkgakiilSrt 196
                 g++  g+v  ++ ++ lv++          te  + +k   p+e f+lg  + + ++   +e ++ +++lSr+
  MMETSP1137-20121227|9012_1 134 GDTCDGVVLGFEPNGALVDIgvkssayvTLTESAI-EKPSRPEEVFELGGSYTFQII--SREDENGQLMLSRR 203
                 66667777777777777777644333322233333.3445699*******9998885..56666679999996 PP

  == domain 2    score: 9.6 bits;  conditional E-value: 0.00011
   TIGR01953 131 vgeiisgkvervkkeevlvelgkteallpkkeqipgek...fklgdkikvlvkevkkekkgakiilSrtspellkellklevpEiadGive 218
                 +++ ++++v  v++ + +++++ ++a+lp ++++pg+      +g+k+ v + +v ++++  ++++S +++ + + + ++ v  + +G+v+
  MMETSP1137-20121227|9012_1 220 EDKSVEATVVAVNRGGAMMSVNGLRAFLPGSHYLPGQTppeELVGSKLSVKLLDVDRDNN--RLVVSHRKALVDQTIKNMSVGSVLEGVVT 308
                 56789****************************99986211458************9999..89999999888888888899999999886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (653 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       134  (0.032667); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.48u 0.16s 00:00:00.64 Elapsed: 00:00:00.46
# Mc/sec: 1873.67
//
Query:       MMETSP1137-20121227|9013_1  [L=230]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (230 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       190  (0.0463189); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.15s 00:00:00.37 Elapsed: 00:00:00.55
# Mc/sec: 551.95
//
Query:       MMETSP1137-20121227|9014_1  [L=167]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (167 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        76  (0.0185275); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.16s 00:00:00.34 Elapsed: 00:00:00.39
# Mc/sec: 565.18
//
Query:       MMETSP1137-20121227|9015_1  [L=164]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (164 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       287  (0.0699659); expected 82.0 (0.02)
Passed bias filter:                       98  (0.0238908); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.15s 00:00:00.34 Elapsed: 00:00:00.38
# Mc/sec: 569.64
//
Query:       MMETSP1137-20121227|9016_1  [L=184]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (184 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       153  (0.0372989); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.13s 00:00:00.31 Elapsed: 00:00:00.63
# Mc/sec: 385.49
//
Query:       MMETSP1137-20121227|9017_1  [L=99]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (99 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        73  (0.0177962); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.13s 00:00:00.27 Elapsed: 00:00:00.56
# Mc/sec: 233.34
//
Query:       MMETSP1137-20121227|9019_1  [L=734]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0091   13.4   0.0      0.019   12.3   0.0    1.5  1  TIGR02452 TIGR02452: TIGR02452 family protein


Domain annotation for each model (and alignments):
>> TIGR02452  TIGR02452: TIGR02452 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.3   0.0   4.6e-06     0.019     199     227 ..     584     612 ..     542     631 .. 0.69

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 4.6e-06
   TIGR02452 199 klaedqnvkalvLGAwGcGvFgndpaeva 227
                   ++d  +  +  G wGcG+Fg+dp+  a
  MMETSP1137-20121227|9019_1 584 ADSNDSSLSPICTGNWGCGAFGGDPQLKA 612
                 4456677788999************8655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (734 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        45  (0.0109703); expected 82.0 (0.02)
Passed bias filter:                       44  (0.0107265); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.15s 00:00:00.60 Elapsed: 00:00:00.69
# Mc/sec: 1404.06
//
Query:       MMETSP1137-20121227|9020_1  [L=392]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.6e-16   55.9   0.0    2.2e-12   44.3   0.0    2.5  2  TIGR00653 GlnA: glutamine synthetase, type I
    4.3e-13   46.4   0.0    1.7e-10   37.8   0.0    2.4  1  TIGR03105 gln_synth_III: glutamine synthetase, type III


Domain annotation for each model (and alignments):
>> TIGR00653  GlnA: glutamine synthetase, type I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.6   0.0     7e-05      0.14      20     138 ..      51     163 ..      42     169 .. 0.76
   2 !   44.3   0.0   1.1e-15   2.2e-12     198     371 ..     205     371 ..     201     385 .. 0.86

  Alignments for each domain:
  == domain 1    score: 8.6 bits;  conditional E-value: 7e-05
   TIGR00653  20 vDikGklkkveipvseleeealee..giaFDgssveGfksieesDlllkpdpetlvivPfraekvlrvicdvyepvtkepyerdpRsiakraeeelktklgdevyfGpEaEFflfdkvefk 138
                 +D  G +++ +  v++ +  +l++     +Dgss       ++s++++kp   ++  +Pfr  + + v +d y+p  ++p  ++ R  a +         g++  fG E+E+ lf+ ++++
  MMETSP1137-20121227|9020_1  51 IDAVGNVRSKTRTVDAAK-ATLDKlpDWNYDGSSTDQ-APGDDSEVIIKPR--AIYKDPFRGGDNILVLTDTYTP-GGTPLPTNSRAPAVERFAS---VEGEDPWFGLEQEYTLFNMDKVT 163
                 566666665555555554.333331246799999875.5568999999875..6899******************.99***99999876555444...5699*************998876 PP

  == domain 2    score: 44.3 bits;  conditional E-value: 1.1e-15
   TIGR00653 198 glevevsHHEvataqaEidikfdklvkaaDeivlyKyvvknvakkhGktatFmpKplfgd.ngsGmHvhlslwkdgenlfageegyagLsetalyyigGilkHakalaAltnptvnsYkRLvpGyEAP.vy.laysaknRsaliRiPasanpkak.RiEvRspDpsanpYLafaallm 371
                 g+ +  +  Ev ++q E ++   + ++aaD++++ +y+   v +    + t  pKp+ gd ng+G H+++s  k     +  e g a + e+a   +g   kH++ +aA  +      +RL   +E   ++  +y+  nR  +iRiP s++ ++   +E R p + + pY+  + ++ 
  MMETSP1137-20121227|9020_1 205 GIAISGTNAEVMPGQWEYQVGPCTGIDAADQLTVSRYILNRVCEDFNVYCTLDPKPISGDwNGAGCHTNFSTEK-----MRKEGGFA-VIEQAIRRLGA--KHTQHIAAYGEGN---ERRLTGAHETAnINtFSYGVANRGCSIRIPRSTEADGYgYLEDRRPSSNCDPYIVTSMIFE 371
                 677777889**************************************************98*********9766.....44455455.77899999995..9*****9998764...59******965143378999*************77765279*************9988875 PP

>> TIGR03105  gln_synth_III: glutamine synthetase, type III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.8   0.0   8.2e-14   1.7e-10      17     347 ..      50     370 ..      46     387 .. 0.77

  Alignments for each domain:
  == domain 1    score: 37.8 bits;  conditional E-value: 8.2e-14
   TIGR03105  17 fvdllGvakaklvPvealdalakegagfaGfavsglglePadadllavpdldsliqlPwkpe.vawvaadlv.vegkpvelapRvvlkkllaeaaekgftlktGveceffllrreedgkls.vaDkaDklakpcYDqralmrry..dvleeisealnelGwdlYqiDheDanGqfelnfeyaDalttaDrvaffkylvkeiaeeegllatfmPkPfa.drtGnGlhlhlslldedgknlfaddadeeglglsklayhfiaGilkhakaLaallaPtvnsYkRlvakrtlsgatWaPalisyggnnRthmvRiP......dagRlelRlaDgaanpYlvsaavl 347
                 ++d +G  ++k+  v+a +a + +   +  +  s+ +++P d+   ++  + ++ + P++ +   +v +d++   g+p+++++R    +    a+ +g + + G+e e+ l++ ++   l  ++      + p Y   +  r y   v e+  +a    G+ +  ++ e   Gq+e +      + +aD++++ +y+++++ e+  + +t+ PkP + d  G G+h+++s  +           +e g+ + ++a + ++   kh++ +aa      n  + + a++t++      ++ syg  nR  ++RiP      ++g le R + + ++pY+v++++ 
  MMETSP1137-20121227|9020_1  50 WIDAVGNVRSKTRTVDAAKATLDKLPDWN-YDGSSTDQAPGDDS-EVIIKPRAIYKDPFRGGdNILVLTDTYtPGGTPLPTNSRAPAVERF--ASVEGEDPWFGLEQEYTLFNMDKVTPLGwPVGGYPGPQGPYYCGAGADRAYgrAVSEAHYKACLFAGIAISGTNAEVMPGQWEYQVGPCTGIDAADQLTVSRYILNRVCEDFNVYCTLDPKPISgDWNGAGCHTNFSTEKM---------RKEGGFAVIEQAIRRLGA--KHTQHIAAYGEG--NERRLTGAHETAN-----INTFSYGVANRGCSIRIPrsteadGYGYLEDRRPSSNCDPYIVTSMIF 370
                 67888888888888888888777765543.34444679997654.445566789999**765144566666636789*******8655554..55678889************9987776524566777888999999999998324556667888899********************************************************874789*********8732.........246788888888888874..777777776553..4433334444444.....46779*************7654444789***************99886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (392 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        61  (0.0148708); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.33u 0.16s 00:00:00.49 Elapsed: 00:00:00.85
# Mc/sec: 608.70
//
Query:       MMETSP1137-20121227|9022_1  [L=540]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.1e-37  127.9   0.0    1.5e-37  127.4   0.0    1.2  1  TIGR01265 tyr_nico_aTase: tyrosine/nicotianamine aminotransferases
    2.2e-29  100.3   0.0    3.1e-29   99.8   0.0    1.2  1  TIGR01264 tyr_amTase_E: tyrosine aminotransferase
    8.8e-19   65.5   0.0    3.1e-13   47.2   0.0    2.1  2  TIGR03540 DapC_direct: LL-diaminopimelate aminotransferase
    4.3e-14   50.0   0.0    9.5e-14   48.9   0.0    1.5  2  TIGR03538 DapC_gpp: succinyldiaminopimelate transaminase
    4.8e-14   49.9   0.0      1e-13   48.8   0.0    1.4  1  TIGR03537 DapC: succinyldiaminopimelate transaminase
      9e-14   49.0   0.0    2.7e-10   37.5   0.0    2.1  2  TIGR03542 DAPAT_plant: LL-diaminopimelate aminotransferase
    1.3e-13   48.3   0.0    1.9e-13   47.8   0.0    1.2  1  TIGR01141 hisC: histidinol-phosphate transaminase
    1.3e-12   45.2   0.0    1.8e-09   34.8   0.0    2.1  2  TIGR03947 viomycin_VioD: capreomycidine synthase
    7.4e-12   42.8   0.0    1.2e-11   42.2   0.0    1.2  1  TIGR01140 L_thr_O3P_dcar: threonine-phosphate decarboxylase
    6.6e-11   39.7   0.0    2.3e-09   34.6   0.0    2.8  1  TIGR03539 DapC_actino: succinyldiaminopimelate transaminase
      1e-06   25.3   0.0    4.3e-06   23.2   0.0    1.8  2  TIGR03801 asp_4_decarbox: aspartate 4-decarboxylase


Domain annotation for each model (and alignments):
>> TIGR01265  tyr_nico_aTase: tyrosine/nicotianamine aminotransferases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  127.4   0.0   4.1e-40   1.5e-37      41     400 ..     144     533 ..     125     536 .. 0.80

  Alignments for each domain:
  == domain 1    score: 127.4 bits;  conditional E-value: 4.1e-40
   TIGR01265  41 PsvfgnlrtaeeaeeavadavrsgkfngYapsvGvlaareavaeylskeleakleaddvvltsGcsqaielvieala.naganiLvPrPgfplYetlakalglevrkydllpekdweidldelealaDe......ktvalvvinPsnPcGsvfsrdHlekvvevaeklklliiaDEvYdklvfgd.atfvplak....laskvP..vlslggiskrwlv.PGWrlGWlivvdpkgiledt.vl.qglkkllqlildpat..lvqgAlpdilektpkeffekk...ikvlkenaelvyeelkeipgltcvkPegamyllvklel..elleeikd.....DvdFceklvkEesvillPgsalelen...ylRitltveksvleealeRikeFce 400
                 P++ +++++++ a  +   a+  + + +Y+ s+G +  ++ va+++s +  +  + +d++lt G+s++++l+i+ +  n  + +LvP P +plY++  +  + +   y l  e+ w + ++ele   D       +  alvvinP+nP+G+    + ++++++++++  l+++aDEvY++ v+++  +f ++ k    ++ + P  ++s  ++sk++l   G r G++ v      ++ + ++  ++  +++++ +  t  +vq   p+    + ++++++k   +  lk+ a  + ++l++++g+tc   +gamy +  +++  ++l   +      D  +   l++   ++++Pgs ++ ++   ++R t+  +++ +e  + R+++F +
  MMETSP1137-20121227|9022_1 144 PALLESFPPDAVARAKEYLAAIPQGIGAYSDSQGFPIVCQQVADFISARDGHPASREDIFLTDGASKGVQLMIKLILrNEQDGVLVPIPQYPLYSATLALENANFVGYYLSEESAWALPVEELERSLDSakskgiNMRALVVINPGNPTGNSLPVENVRDIINFCSRNDLVLMADEVYQENVYDSaRPFNSFKKvlreMSPEPPlqLVSFHSTSKGFLGeCGLRGGYMEVIGFDPQVKAQiLKmASIGLCSNTVGQLVTglMVQP--PKPGDASYESYMAEKqgiLGSLKRRAVKLVDALNKLEGVTCQSAQGAMYAFPCISFppKALAAAEAagkppDAFYAMALLEKTGIVVVPGSGFGQRDgtwHFRTTFLPPEHDMEGVMGRLADFHK 533
                 6666677777766666666666778899**********************************************988688999****************************************9988864444446789********************************************9965777765411115555554458999******9637******97765554444442330344434444333333114444..555567778888766111556799999999*********************99986333444333222233899999****************997556469********************986 PP

>> TIGR01264  tyr_amTase_E: tyrosine aminotransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.8   0.0   8.3e-32   3.1e-29      67     400 ..     170     533 ..     144     536 .. 0.78

  Alignments for each domain:
  == domain 1    score: 99.8 bits;  conditional E-value: 8.3e-32
   TIGR01264  67 nGyaptvGaleareaiaeyyankradgeleaddvvlasGcshalelaieal.adaGenvlvPrPGfplyetlakaldievklynlladedweidlkeleslidd......ktkalivnnPsnPcGsvfsrkhleellalaerlklpiladeiyedlvfkg....atf.lalaslssevP..ilslgGlakrllv.PGWrlGWliihdrkgvlrdvkdGlkklsqrilGpnt...lvqGalkeil...rktPqeyf...dgvvsvlesnadlvyealaevvGlkpvkPkGamyllvkiel..ekfkelks.....dvefveklveeesvfvlPgsifelPg...ylrvvltvpkavleeavsrikefce 400
                   y+ ++G ++ ++++a++ +  r   + +++d+ l+ G+s++++l i+ +  ++ + vlvP P +ply++     + +   y l  +  w + ++ele   d       + +al+v nP+nP+G  +  + +++++ ++ r+ l+++ade+y++ v++       f + l ++s+e P  ++s   ++k +l   G r G++ +    g   +vk  + k++   l +nt   lv G + +         ++y+   +g++  l+  a  + +al+++ G++    +Gamy +  i+   ++    +      d  +   l+e   + v+Pgs f   +   ++r +   p++++e  + r+++f +
  MMETSP1137-20121227|9022_1 170 GAYSDSQGFPIVCQQVADFIS-ARDGHPASREDIFLTDGASKGVQLMIKLIlRNEQDGVLVPIPQYPLYSATLALENANFVGYYLSEESAWALPVEELERSLDSakskgiNMRALVVINPGNPTGNSLPVENVRDIINFCSRNDLVLMADEVYQENVYDSarpfNSFkKVLREMSPEPPlqLVSFHSTSKGFLGeCGLRGGYMEVI---GFDPQVKAQILKMASIGLCSNTvgqLVTGLMVQPPkpgDASYESYMaekQGILGSLKRRAVKLVDALNKLEGVTCQSAQGAMYAFPCISFppKALAAAEAagkppDAFYAMALLEKTGIVVVPGSGFGQRDgtwHFRTTFLPPEHDMEGVMGRLADFHK 533
                 5699****************9.67778899*****************98651688999***********988888899999999**************98777633333356799********************************************965553441456789999884358999*******6379****97543...33344455555555544444441113444443332000334456663335788999*****************************999863323332221122338889999***************765334489999999******99999999965 PP

>> TIGR03540  DapC_direct: LL-diaminopimelate aminotransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.2   0.0   8.3e-16   3.1e-13      62     219 ..     171     335 ..     152     376 .. 0.77
   2 !   16.2   0.0   2.2e-06    0.0008     298     381 ..     432     529 ..     415     531 .. 0.68

  Alignments for each domain:
  == domain 1    score: 47.2 bits;  conditional E-value: 8.3e-16
   TIGR03540  62 ryPsyeGllayrkavadwykkrfgveldpetevlsliGskeGiahl.plafvnpGdivlvpdPgyPvykistllaggepyelPlkeendf.lPdldaipedv.lkk.....akilflnyPnnPtsavadkeffkevvefakeyniivvhdaayseivfdeykal.sf 219
                  y +++G     ++vad++  r g     e   l+  G+ +G++ +  l + n+ d vlvp P yP y+ +  l +++     l ee  + lP +++++  +   k      + l +  P nPt+   + e ++++++f+  ++++++ d+ y+e v+d  ++  sf
  MMETSP1137-20121227|9022_1 171 AYSDSQGFPIVCQQVADFISARDGHPASREDIFLT-DGASKGVQLMiKLILRNEQDGVLVPIPQYPLYSATLALENANFVGYYLSEESAWaLP-VEELERSLdSAKskginMRALVVINPGNPTGNSLPVENVRDIINFCSRNDLVLMADEVYQENVYDSARPFnSF 335
                 58889999999***********9987665554444.577778876515677799************************99999***9998455.4444433212230011145667778****************************************99986244 PP

  == domain 2    score: 16.2 bits;  conditional E-value: 2.2e-06
   TIGR03540 298 krrdllvealkki.GldvkkpkatfylWvkv...PeGytsae.........fakklleeagvvvtpGvgfGes.GeGyirisltvseerlkeaverlk 381
                 +r   lv+al+k+ G++++++++++y +  +   P+ + +ae         +a  lle++g+vv+pG gfG+  G  ++r +   +e+ ++  + rl+
  MMETSP1137-20121227|9022_1 432 RRAVKLVDALNKLeGVTCQSAQGAMYAFPCIsfpPKALAAAEaagkppdafYAMALLEKTGIVVVPGSGFGQRdGTWHFRTTFLPPEHDMEGVMGRLA 529
                 5555677777776677777777777766333222344443332222222325788****************853888899999888888888888876 PP

>> TIGR03538  DapC_gpp: succinyldiaminopimelate transaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.9   0.0   2.5e-16   9.5e-14      48     257 ..     159     371 ..     146     394 .. 0.82
   2 ?   -3.5   0.0         2   7.6e+02     337     357 ..     479     499 ..     473     505 .. 0.83

  Alignments for each domain:
  == domain 1    score: 48.9 bits;  conditional E-value: 2.5e-16
   TIGR03538  48 lealvenleelskyPttkGlpelreaiaeWlerrfelpagvdperqvlPvnGtrealfafvqavidraekalvvlPnPfyqiyeGaallagaep..yflnctae.....ngfkpdfdavpeevWkrvqllfvcsPgnPtGavlsleelkklleladkydfiiasdecyselyldeaeaPvGlleaaaelGrddfkrllvfhslskrs.nvPGlrsGfv 257
                 +e l++  +++ +y  ++G p + + +a++++ r   pa   + ++++   G+  ++  +++ ++ ++ +  v++P P y +y  +  l +a+   y+l  +++     ++++  +d+ +++   +++ l v  PgnPtG+ l++e+++ +++   + d+++ +de y e  +d a +     ++  e+  +   +l+ fhs sk      Glr G++
  MMETSP1137-20121227|9022_1 159 KEYLAAIPQGIGAYSDSQGFPIVCQQVADFISARDGHPA---SREDIFLTDGASKGVQLMIKLILRNE-QDGVLVPIPQYPLYSATLALENANFvgYYLSEESAwalpvEELERSLDSAKSKGI-NMRALVVINPGNPTGNSLPVENVRDIINFCSRNDLVLMADEVYQENVYDSARPFNSFKKVLREMSPEPPLQLVSFHSTSKGFlGECGLRGGYM 371
                 456777778999**********************99998...8899999********99999888665.567899********99999988875337887654411111445555665554443.455677889*************************************999998888899999*******************7525689999984 PP

  == domain 2    score: -3.5 bits;  conditional E-value: 2
   TIGR03538 337 ddeafaralyeeenvkvlpGr 357
                 +d+ +a al e++ + v+pG+
  MMETSP1137-20121227|9022_1 479 PDAFYAMALLEKTGIVVVPGS 499
                 68889999***********97 PP

>> TIGR03537  DapC: succinyldiaminopimelate transaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.8   0.0   2.7e-16     1e-13      22     338 ..     161     519 ..     150     529 .. 0.70

  Alignments for each domain:
  == domain 1    score: 48.8 bits;  conditional E-value: 2.7e-16
   TIGR03537  22 lldavpe.vsqypsvlGekalreaiagylerrfgvkldpdaevlpsaGskeaifhlplafldpeeerkkviygtpgypvyerGalfaggealkvklkkedgflleldaveeailr......etkivwinyphnptGaeapasylkevaelareygiilasdecyae.iyseekp.asvlevgle.......nvlafhslskr.sGmtGyrsgfl..aG.deelvsalrklrasvGvaspe........fvqaaataawsddahvaerrkif...krkrdlfleflak.kGlealasdatfylw..vkvp.........egi.daksyalrllee.GivvapGeafgage.eeyvrvalvptle 338
                  l+a+p+ +  y    G   + + +a+++  r g     +   l+   sk   + ++l +    +e+  v+++ p yp y       +++ +   l +e+ + l+++++e+++        + + + +  p nptG   p + ++++++++   +++l++de y e +y+  +p +s  +v +e       ++++fhs sk   G  G r g++   G d+++ ++     as+G++s +        +vq       s ++++ae++ i+   kr+  ++++ l+k +G+ +++++ ++y +  +  p         +g   +  ya++lle+ Givv pG+ fg+ + + ++r +++p   
  MMETSP1137-20121227|9022_1 161 YLAAIPQgIGAYSDSQGFPIVCQQVADFISARDGHPASREDIFLTDGASKGVQLMIKLILR---NEQDGVLVPIPQYPLYSATLALENANFVGYYLSEESAWALPVEELERSLDSakskgiNMRALVVINPGNPTGNSLPVENVRDIINFCSRNDLVLMADEVYQEnVYDSARPfNSFKKVLREmspepplQLVSFHSTSKGfLGECGLRGGYMevIGfDPQVKAQ-ILKMASIGLCSNTvgqlvtglMVQPPKPGDASYESYMAEKQGILgslKRRAVKLVDALNKlEGVTCQSAQGAMYAFpcISFPpkalaaaeaAGKpPDAFYAMALLEKtGIVVVPGSGFGQRDgTWHFRTTFLPPEH 519
                 5678886477888888888888999999999988877776666666666666566666554...47889************999999999******************9987643111111233445556**********************************8659999988345555555533335556899******7369999999997334525555554.45557788887762222222245555566778899*******97222455556788888757***********98744544422111111111113456******854***********97514568888777655 PP

>> TIGR03542  DAPAT_plant: LL-diaminopimelate aminotransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.5   0.0   7.2e-13   2.7e-10      67     230 ..     168     336 ..     152     385 .. 0.72
   2 !    9.2   0.0   0.00029      0.11     357     398 ..     486     528 ..     473     531 .. 0.80

  Alignments for each domain:
  == domain 1    score: 37.5 bits;  conditional E-value: 7.2e-13
   TIGR03542  67 tfrGyGpeqGldllreaiaeeeykgr...idpeeifisdGakcdvarllelfgsd..ktvavqdPvyPvyvdsavlaGragvldddgkykkivylpctkenefi.PelpeekkvdiiylCsPnnPtGtvltkeqlkelvdyakendslilfdaayeafisdpslPksiye 230
                  +  y   qG++++ +++a+   +      + e+if++dGa   v  + +l+ ++  + v v  P yP y  +  l  + +++      ++  +lp  + +  +  + ++  ++  +++  P nPtG  l  e++++++++  +nd +++ d  y+  + d++ P   + 
  MMETSP1137-20121227|9022_1 168 GIGAYSDSQGFPIVCQQVADFISARDghpASREDIFLTDGASKGVQLMIKLILRNeqDGVLVPIPQYPLYSATLALENA-NFVGYYLSEESAWALPVEELERSLdSAKSKGINMRALVVINPGNPTGNSLPVENVRDIINFCSRNDLVLMADEVYQENVYDSARPFNSFK 336
                 556799999***99999987665544668999*********999988877665441146889999*****998888766.55555555566778888764444403444444556688899****************************************998866554 PP

  == domain 2    score: 9.2 bits;  conditional E-value: 0.00029
   TIGR03542 357 kllkeaevvgtPGsGfGs.sGeGfvrlsalgkredivealeri 398
                  ll+++ +v++PGsGfG+  G+ ++r + l  ++d+   + r+
  MMETSP1137-20121227|9022_1 486 ALLEKTGIVVVPGSGFGQrDGTWHFRTTFLPPEHDMEGVMGRL 528
                 58999************72589999999888888877777766 PP

>> TIGR01141  hisC: histidinol-phosphate transaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.8   0.0   5.2e-16   1.9e-13      48     211 ..     168     359 ..     148     387 .. 0.72

  Alignments for each domain:
  == domain 1    score: 47.8 bits;  conditional E-value: 5.2e-16
   TIGR01141  48 klhrYpdpqale.lkealakylg......veeenillgnGsdelielliraflepg.davlvleptysmYevsakiagaevkevplked..gqedleavle....aakek..vklvflasPnnPtGnllkreeiekvleev.e.dalVVvDeAYieFsee........asvlellaeyp..nlvvlrTlSKa 211
                  +  Y d+q++  + +++a++++       + e+i+l++G+  +++l+i+ +l ++ d vlv+ p y +Y+ + ++++a+ + + l e+  +   +e+++     a+++   ++   + +P nPtGn+l  e+++++++   + d + + De Y e   +        ++vl  ++  p  +lv   + SK 
  MMETSP1137-20121227|9022_1 168 GIGAYSDSQGFPiVCQQVADFISardghpASREDIFLTDGASKGVQLMIKLILRNEqDGVLVPIPQYPLYSATLALENANFVGYYLSEEsaWALPVEELERsldsAKSKGinMRALVVINPGNPTGNSLPVENVRDIINFCsRnDLVLMADEVYQENVYDsarpfnsfKKVLREMSPEPplQLVSFHSTSKG 359
                 6677888888751568899998889999999**********************9988*****************************999995555555544332344443114557789********************99663555567****99766555555443333333333333555556666664 PP

>> TIGR03947  viomycin_VioD: capreomycidine synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.8   0.0   4.8e-12   1.8e-09      49     223 ..     174     370 ..     170     387 .. 0.74
   2 !    8.2   0.0   0.00059      0.22     289     343 ..     447     516 ..     427     531 .. 0.67

  Alignments for each domain:
  == domain 1    score: 34.8 bits;  conditional E-value: 4.8e-12
   TIGR03947  49 eslGgeklraaladrla..gG...daekvlvthGsseaiylvltallrP.Gdevvvvdpayhslselavalgakvrrwplaaerdfrpdlddlralvtd.rt.....rlvvvnfPhnPtGasvderelsellelaaesgavllWdaafadlvyda........eplpepsaaad.rvisfgtlskaf.GlpGlrvGW 223
                  s+G + + + +ad ++  +G     e ++ t G+s  + l+++++lr   d v+v  p y   s+  +  +a+   + l+ e+ ++  +++l+  + + ++     r++vv  P nPtG s+  ++ +++++  ++ + vl+ d+ +++ vyd+        ++l e s +   + +sf   sk f G  Glr G+
  MMETSP1137-20121227|9022_1 174 DSQGFPIVCQQVADFISarDGhpaSREDIFLTDGASKGVQLMIKLILRNeQDGVLVPIPQYPLYSATLALENANFVGYYLSEESAWALPVEELERSLDSaKSkginmRALVVINPGNPTGNSLPVENVRDIINFCSRNDLVLMADEVYQENVYDSarpfnsfkKVLREMSPEPPlQLVSFHSTSKGFlGECGLRGGY 370
                 56666666666666543113311145679******************973699************999999**********************876654232223337788888***************************************97221111112222222222124566777777665666777665 PP

  == domain 2    score: 8.2 bits;  conditional E-value: 0.00059
   TIGR03947 289 vrltvPeGGvaafprf............agladvtdlCerllarhgvlvvPGscfGaadr...vrlGfgg 343
                 v +   +G + afp +            ag+     +   ll++ g++vvPGs fG+ d     r  f  
  MMETSP1137-20121227|9022_1 447 VTCQSAQGAMYAFPCIsfppkalaaaeaAGKPPDAFYAMALLEKTGIVVVPGSGFGQRDGtwhFRTTFLP 516
                 66777777777777666677666654432322233356789***************98864445666655 PP

>> TIGR01140  L_thr_O3P_dcar: threonine-phosphate decarboxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.2   0.0   3.1e-14   1.2e-11      58     206 ..     190     370 ..     170     378 .. 0.76

  Alignments for each domain:
  == domain 1    score: 42.2 bits;  conditional E-value: 3.1e-14
   TIGR01140  58 aayygld..aesvlavnGaqeaiqllprl...lapkrvlvlaptyseyaralraagaevvels................dleelaaeleeadllvvvnPnNPtGrllekeellalaerlkarggllvvDEAFidftpae.....slaalaea.....lpglvVlrSltKff.glaGlRlGf 206
                 +a+ g +  +e++ ++ Ga + +ql+ +l    ++  vlv+ p+y  y ++l+  +a+ v +                 +l++++++  ++++lvv+nP NPtG+ l+ e+++++++ ++++  +l+ DE + + + ++     s+ +  ++       +lv ++S  K f g  GlR G+
  MMETSP1137-20121227|9022_1 190 SARDGHPasREDIFLTDGASKGVQLMIKLilrNEQDGVLVPIPQYPLYSATLALENANFVGYYlseesawalpveelerSLDSAKSKGINMRALVVINPGNPTGNSLPVENVRDIINFCSRNDLVLMADEVYQENVYDSarpfnSFKKVLREmspepPLQLVSFHSTSKGFlGECGLRGGY 370
                 444444433899*************777733223344589999*****************99999*******999888877777777799******************************************8876553210023333322243333335666777777554667777776 PP

>> TIGR03539  DapC_actino: succinyldiaminopimelate transaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.6   0.0   6.1e-12   2.3e-09      49     355 ..     169     527 ..     149     529 .. 0.63

  Alignments for each domain:
  == domain 1    score: 34.6 bits;  conditional E-value: 6.1e-12
   TIGR03539  49 apgyPqtaGteelreaivdalerrlgvkgldeeavlPviGtkelvallPtllGlgagdtvviPevayPtyevgarlagaeavaa............ddlteldp..........ekvkliwlnsPanPtGrvlsveelrkvvalarergvvvasdecylelgWege.....avsvldpevcggdlegllavhslskrs.nlagyragf..vaG.dealvaellevrk...........haGlmv..paPvqaamvaaladdehvaeqkeryaarrellkaalek.aGfriehseaglylW...............atrgedaretvdrlaelGilvaPGdfyge.agkefvrvaltatderiaaaver 355
                   +y   +G + + + ++d +  r g ++   e+++ + G+   v l+ +l+  +++d v++P   yP y+ + +l  a+ v +            ++l+              +  +l+ +n P+nPtG+ l ve++r ++++   ++ v+++de y e ++++         vl  e++ +    l++ hs sk      g r g+  v G d+++ a++l++              +Glmv  p+P  a+ ++ +a+++ ++      ++r  +l +al+k  G + + +++++y +               a +  da  +++ l ++Gi+v PG+ +g+ +g+ + r ++   ++ ++ ++ r
  MMETSP1137-20121227|9022_1 169 IGAYSDSQGFPIVCQQVADFISARDGHPAS-REDIFLTDGASKGVQLMIKLILRNEQDGVLVPIPQYPLYSATLALENANFVGYylseesawalpvEELE---RsldsakskgiNMRALVVIN-PGNPTGNSLPVENVRDIINFCSRNDLVLMADEVYQENVYDSArpfnsFKKVL-REMSPEPPLQLVSFHSTSKGFlGECGLRGGYmeVIGfDPQVKAQILKMASiglcsntvgqlVTGLMVqpPKPGDASYESYMAEKQGILG---SLKRRAVKLVDALNKlEGVTCQSAQGAMYAFpcisfppkalaaaeaAGKPPDAFYAMALLEKTGIVVVPGSGFGQrDGTWHFRTTFLPPEHDMEGVMGR 527
                 456999999999999999999999999966.6778888898889999888888889999***********999888888876431111111111112322...12223433332344566666.***************************************9987655333444.455666777899*****997424578888884434447888888877643111111111113455552222333333333333333322...233445578899987458999999999996533333333332222122344788888888889999999987776256677787776666666666555 PP

>> TIGR03801  asp_4_decarbox: aspartate 4-decarboxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.2   0.0   1.1e-08   4.3e-06     221     287 ..     254     324 ..     181     373 .. 0.72
   2 ?   -0.6   0.0      0.19        71     468     488 ..     485     505 ..     472     537 .. 0.79

  Alignments for each domain:
  == domain 1    score: 23.2 bits;  conditional E-value: 1.1e-08
   TIGR03801 221 dgkatwqytdkelekLkdp......kikalfvvnPsnPpsvaiseesieklakiveekrpdLmiltDDvygtf 287
                  ++++w  + +ele+  d+      +++al+v+nP nP+++++  e+++ +++  +  r+dL++++D+vy   
  MMETSP1137-20121227|9022_1 254 SEESAWALPVEELERSLDSakskgiNMRALVVINPGNPTGNSLPVENVRDIINFCS--RNDLVLMADEVYQEN 324
                 3456799999999987775322222589**************99888888877765..69**********754 PP

  == domain 2    score: -0.6 bits;  conditional E-value: 0.19
   TIGR03801 468 frlaeessivLLkgegfksee 488
                 ++l e+++iv+++g+gf+ ++
  MMETSP1137-20121227|9022_1 485 MALLEKTGIVVVPGSGFGQRD 505
                 45679************9864 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (540 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       106  (0.0258411); expected 82.0 (0.02)
Passed bias filter:                      104  (0.0253535); expected 82.0 (0.02)
Passed Vit filter:                        18  (0.0043881); expected 4.1 (0.001)
Passed Fwd filter:                        11  (0.00268162); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.54u 0.15s 00:00:00.69 Elapsed: 00:00:00.72
# Mc/sec: 989.92
//
Query:       MMETSP1137-20121227|9023_1  [L=56]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        36  (0.00877621); expected 82.0 (0.02)
Passed bias filter:                       36  (0.00877621); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.17s 00:00:00.29 Elapsed: 00:00:00.27
# Mc/sec: 273.76
//
Query:       MMETSP1137-20121227|9024_1  [L=505]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.2e-12   45.6  18.7    3.4e-07   27.8   4.0    2.2  2  TIGR00950 2A78: carboxylate/amino acid/amine transporter


Domain annotation for each model (and alignments):
>> TIGR00950  2A78: carboxylate/amino acid/amine transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.8   4.0   8.4e-11   3.4e-07       2     155 ..     169     329 ..     168     359 .. 0.77
   2 !   23.8   3.5   1.4e-09   5.5e-06     194     264 .]     388     458 ..     372     458 .. 0.90

  Alignments for each domain:
  == domain 1    score: 27.8 bits;  conditional E-value: 8.4e-11
   TIGR00950   2 Gttgvvikelles.qlplyfavlrrli.falll.lLpllrlrnslkrllrl....lllgalqlgvfyvllflavkkltvaiaalllvlaPlyvtllsdllekervrkkkllAavlalaGivlllsdg.nlsislaGlllgllsgisfAlgtvlakrlvkkeg 155
                 Gt + ++k l    ++p+ ++++r+ i +a +l l ++l +++++   ++l    +l+ga ++++ y +  la + ++++i a ll+l+ +   +l+ +l +++   k++lAa+lal+G+  l s +    ++  G llgll ++ f  g+++  r++++++
  MMETSP1137-20121227|9024_1 169 GTNYAFVKLLGGWiDTPAEASLMRFAIsLATMLpLVATLAAKQPRLVEWPLardgMLVGA-CFAMGYTTQALALQTSEAGIQAFLLSLTVVVCPILETVLDRRQQPPKVWLAAALALVGVGCLESGSlISGNFHPGDLLGLLQAVFFGTGFYICERAMHRHS 329
                 888888888877656666666666533133333134444444444444444111155555.566778888899999*******************************************9999999944455678************************998 PP

  == domain 2    score: 23.8 bits;  conditional E-value: 1.4e-09
   TIGR00950 194 qwlallyLgligtllayflynkglkevdasaasilalleplvallLgllilgetlslvqliggalilaavl 264
                  ++al++ g++ t++  +l +  l e++ + a+++   epl a+l ++++lgetls++ l+ggal+++a l
  MMETSP1137-20121227|9024_1 388 VIGALVWTGVVTTAACCVLEAAVLGEISSADATVIFATEPLWAVLWSFVLLGETLSPSCLLGGALMVSACL 458
                 689****************************************************************9976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (505 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       164  (0.0399805); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.17s 00:00:00.51 Elapsed: 00:00:00.51
# Mc/sec: 1306.95
//
Query:       MMETSP1137-20121227|9025_1  [L=591]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.02   12.2   0.0      0.063   10.6   0.0    1.8  1  TIGR00633 xth: exodeoxyribonuclease III (xth)


Domain annotation for each model (and alignments):
>> TIGR00633  xth: exodeoxyribonuclease III (xth)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   1.5e-05     0.063      20      76 ..     503     565 ..     496     581 .. 0.75

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 1.5e-05
   TIGR00633  20 lellkeekpDvlclQEtKvaeeqlpkell.....eeegYevafssakkk.gysGvallskeep 76 
                 ++ +++ k D+++lQE  v+++++   +       + gY+ ++  + +  +  G+a+l  +++
  MMETSP1137-20121227|9025_1 503 IAAMRSDKIDIIALQEHNVHRQNQRMIEShkhaaVTLGYKLFIAPTATVsQVGGTAILIAQTL 565
                 5778899************98544322222334478899999987765448899999987765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (591 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        86  (0.0209654); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.16s 00:00:00.53 Elapsed: 00:00:00.56
# Mc/sec: 1368.52
//
Query:       MMETSP1137-20121227|9026_1  [L=312]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (312 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        79  (0.0192589); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.13s 00:00:00.37 Elapsed: 00:00:00.41
# Mc/sec: 1004.40
//
Query:       MMETSP1137-20121227|9027_1  [L=401]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (401 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        81  (0.0197465); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.13s 00:00:00.41 Elapsed: 00:00:00.42
# Mc/sec: 1260.18
//
Query:       MMETSP1137-20121227|9028_1  [L=117]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.1e-21   73.8   1.5    3.4e-21   73.7   1.0    1.0  1  TIGR00601 rad23: UV excision repair protein Rad23
     0.0031   15.9   2.3     0.0044   15.3   1.6    1.3  1  TIGR00531 BCCP: acetyl-CoA carboxylase, biotin carboxyl carrier protein
  ------ inclusion threshold ------
       0.11    8.8   8.0       0.14    8.5   5.5    1.1  1  TIGR01348 PDHac_trf_long: dihydrolipoyllysine-residue acetyltransferase


Domain annotation for each model (and alignments):
>> TIGR00601  rad23: UV excision repair protein Rad23
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.7   1.0   2.5e-24   3.4e-21       1     115 [.       1     115 [.       1     117 [] 0.74

  Alignments for each domain:
  == domain 1    score: 73.7 bits;  conditional E-value: 2.5e-24
   TIGR00601   1 vkltlKtlkqqkfkidlepdetvkelKekie.sekg.kdayevaqqkLiyaGkiLsDdktvkeykikekdfvvvmvskkKavkakaaePaatpesaptptpsatpasvaekksaaPa 115
                 +k  lKt+k+  f+++++pd+ v ++Ke  + se+g  d ++ + +kLi++Gk+L + + ++ y ike+df+vvm sk+K   a+ a+ aa+p++ p+++  ++pa+ a+ ++ +Pa
  MMETSP1137-20121227|9028_1   1 MKCELKTVKGASFPVEVSPDTPVRKVKELAAaSEQGvADGWDADTMKLIHQGKVLDNTRDLASYSIKEGDFMVVMASKAKKPAATPAASAAAPTATPATA--QPPAAAATPAAVTPA 115
                 67889**********************9765145554699**************************************9987733333333333333332..344444444444444 PP

>> TIGR00531  BCCP: acetyl-CoA carboxylase, biotin carboxyl carrier protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   1.6   3.2e-06    0.0044      16      73 ..      59     116 ..      44     117 .] 0.80

  Alignments for each domain:
  == domain 1    score: 15.3 bits;  conditional E-value: 3.2e-06
   TIGR00531  16 sditelelkeeevevklkkeaaaakksvlqqaaapvvaqvpavasaavpaaavaaeaa 73 
                  d+  +++ke+++ v++  +a   + +    aaap+  ++ a+++aa+ ++a+ ++aa
  MMETSP1137-20121227|9028_1  59 RDLASYSIKEGDFMVVMASKAKKPAATPAASAAAPTATPATAQPPAAAATPAAVTPAA 116
                 478999********99987777777777778888888889999999999999888885 PP

>> TIGR01348  PDHac_trf_long: dihydrolipoyllysine-residue acetyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   5.5    0.0001      0.14     218     268 ..      65     113 ..      55     117 .] 0.63

  Alignments for each domain:
  == domain 1    score: 8.5 bits;  conditional E-value: 0.0001
   TIGR01348 218 kvktGdlilvlevegaapaaaeapakaeaaaaapaaeaeeaaaapaaakae 268
                 ++k Gd ++v+ +++  paa++a  +a a++a+pa+  +++aaa+++a  +
  MMETSP1137-20121227|9028_1  65 SIKEGDFMVVMASKAKKPAATPAASAA-APTATPATA-QPPAAAATPAAVT 113
                 6999*******9999988888444333.333444443.3444443333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (117 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       129  (0.0314481); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.17u 0.17s 00:00:00.34 Elapsed: 00:00:00.56
# Mc/sec: 275.76
//
Query:       MMETSP1137-20121227|9029_1  [L=139]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (139 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        37  (0.00901999); expected 82.0 (0.02)
Passed bias filter:                       36  (0.00877621); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.16s 00:00:00.32 Elapsed: 00:00:00.25
# Mc/sec: 733.86
//
Query:       MMETSP1137-20121227|9030_1  [L=349]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (349 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       167  (0.0407118); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.18s 00:00:00.45 Elapsed: 00:00:00.28
# Mc/sec: 1588.42
//
Query:       MMETSP1137-20121227|9031_1  [L=81]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (81 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        73  (0.0177962); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.14s 00:00:00.27 Elapsed: 00:00:00.27
# Mc/sec: 395.97
//
Query:       MMETSP1137-20121227|9033_1  [L=84]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (84 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        60  (0.014627); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.15s 00:00:00.28 Elapsed: 00:00:00.37
# Mc/sec: 299.65
//
Query:       MMETSP1137-20121227|9034_1  [L=303]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (303 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       147  (0.0358362); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.13s 00:00:00.39 Elapsed: 00:00:00.41
# Mc/sec: 975.43
//
Query:       MMETSP1137-20121227|9035_1  [L=395]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (395 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        43  (0.0104827); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.16s 00:00:00.42 Elapsed: 00:00:00.42
# Mc/sec: 1241.33
//
Query:       MMETSP1137-20121227|9036_1  [L=618]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   1.2e-109  364.5   0.3   1.6e-109  364.0   0.2    1.0  1  TIGR00483 EF-1_alpha: translation elongation factor EF-1, subunit alpha
    4.3e-58  195.1   0.0    5.3e-58  194.8   0.0    1.1  1  TIGR02034 CysN: sulfate adenylyltransferase, large subunit
    2.9e-41  139.3   0.6    9.8e-41  137.6   0.4    1.7  1  TIGR00485 EF-Tu: translation elongation factor Tu
    9.1e-29   98.4   0.1    1.6e-27   94.3   0.0    2.5  2  TIGR00475 selB: selenocysteine-specific translation elongation factor
    5.9e-20   69.7   0.0    1.2e-19   68.6   0.0    1.5  1  TIGR03680 eif2g_arch: translation initiation factor 2, gamma subunit
    2.3e-14   50.4   0.0    3.5e-14   49.8   0.0    1.2  1  TIGR01394 TypA_BipA: GTP-binding protein TypA/BipA
    2.3e-10   38.3   0.1      2e-09   35.3   0.0    2.4  1  TIGR00231 small_GTP: small GTP-binding protein domain
    1.2e-09   35.3   0.2    7.4e-09   32.7   0.1    2.2  2  TIGR00487 IF-2: translation initiation factor IF-2
    3.6e-07   26.5   0.1    5.3e-07   26.0   0.0    1.1  1  TIGR00484 EF-G: translation elongation factor G
    5.3e-07   26.2   0.0      6e-06   22.7   0.0    2.2  1  TIGR01393 lepA: GTP-binding protein LepA
      6e-06   22.8   0.0    9.8e-06   22.1   0.0    1.3  1  TIGR00503 prfC: peptide chain release factor 3
    0.00046   17.1   0.1      0.095    9.5   0.0    2.4  2  TIGR03594 GTPase_EngA: ribosome-associated GTPase EngA


Domain annotation for each model (and alignments):
>> TIGR00483  EF-1_alpha: translation elongation factor EF-1, subunit alpha
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  364.0   0.2  4.7e-112  1.6e-109       4     424 ..     102     532 ..     100     534 .. 0.96

  Alignments for each domain:
  == domain 1    score: 364.0 bits;  conditional E-value: 4.7e-112
   TIGR00483   4 ekehlnvafighvdsgkstlvgrllyeagaiderlleklkkeaeekgkasfefayvldklkeerergvtidvahkkfetdkyevtivdapghrdfiknmitgasqadaavlvvavddgele...vqpqtrehvllartlgikqlivainkmd..svnydeekfeelkkevsellkkvgykpd.evefipvsaykgdnvvkkse..napwykgktllealdkleapekpvdkplripiqdvysitgvgtvpvgrvetgvlkkgekvvfepagvsgevksiemhheqieqaepgdnigfnvrgvskkdirrgdvagdadn.ppkvakeftaqivv...lqhpgaitvgytpvldahtaqvacrfvellkkldprtgkvkeenpkflktgdaaivklkptkplviekvkeipklgrfairdmgqtvaagvvidvkk 424
                 e+ehln++fighvd+gkst  g++ly++ ++d r++ek++kea+ek + s+  a+++d  +eer +g t++v +++fe++  + ti+dapgh++++ nmi+ga qad+ vlv+++ +ge+e      qtreh+lla+tlg++ l+v inkmd  +v++ +e+fee +++++ +lk  gy+++ +v f+p+sa++  nv+k+ e   a wy+g+ +le ld+l   ++  d plr+p+   y+   +gtv  g+ve g + +g+k+ + p     ev  + +  ++++    g+n    ++++s +di  g v  +       +++ f+aq+++   l+h +  ++gyt vl++h+    c ++el   +d++tgk+ +  p f+k+g    v ++  + +++e++ +  +lgrf++rd g+t+++g +id+++
  MMETSP1137-20121227|9036_1 102 EREHLNLVFIGHVDAGKSTFCGQILYQTEQVDARTIEKYEKEAKEKNRESWFLAFIMDTNEEERAKGKTVEVGRAHFESKNKRYTILDAPGHKNYVPNMIAGACQADVGVLVISARKGEFEtgsAAXQTREHALLAKTLGVRLLVVVINKMDdmTVEWAKERFEECRDKLTPFLKGCGYNVKkDVVFLPISALTAANVIKRMEipAASWYDGPCFLEVLDNLPVVDRNRDAPLRLPVLSKYK--DLGTVIEGKVEQGTISVGDKLWMMPNRTPVEVLNVWLDQDEVRYLIGGENARVKLKDISDEDIMPGFVLTQRGAgACAAVRRFEAQLIIvelLEHKSIFSAGYTAVLHVHAMAEECSILELTASIDKKTGKKSKRPPMFVKSGAVVNVIIEVDQAVCVEQFDQCAQLGRFTLRDEGKTIGIGKIIDLTP 532
                 89**********************************************************************************************************************9887889************************966699***********************8538****************99844689*****************************99887..799*****************************************************************999888688999******98645579********************************************************************************************986 PP

>> TIGR02034  CysN: sulfate adenylyltransferase, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  194.8   0.0   1.6e-60   5.3e-58       1     404 [.     106     525 ..     106     527 .. 0.88

  Alignments for each domain:
  == domain 1    score: 194.8 bits;  conditional E-value: 1.6e-60
   TIGR02034   1 lrfltcGsvddGkstliGrllhdtkqiledqlaalerdskkkgtegeeidlallvdGlqaereqgitidvayryfstdkrkfivadtPGheqytrnmatgastadlavllvdarkGvle......qtrrhsiiasllGikhvvlavnkid..lvdydeevfeeikkdylalaekl...gvsdvtviPlsalkGdnvvekse..smpWyeGptllevletveveesaeeeelrlpvqyvnrpnldfrGyaGtiasGsvkvGdevvvlpsgresrvarivtfdgelekaeaGeavtlvled..eidisrGdllaaade.apevadqfaaelvwla....deallpGksyklklgtkkvrasvaeikhkvdvntlekeaakeleln..eiglvklsldeeialdayeenrttGafilidrlsnatvgaG 404
                 l ++  G vd Gkst+ G++l+ t+q+ +  +++ e+++k+k+ e     la+++d  + er +g t++v   +f+ + +++ + d+PGh+ y  nm++ga  ad+ vl++ arkG  e      qtr h+++a  lG++ +v+ +nk+d   v++ +e fee +++ + + +      ++dv+++P+sal+  nv+++ e  +  Wy+Gp +levl+++ v ++ ++ +lrlpv    +         G +  G+++vGd++ ++p+ +  +v ++   + e++    Ge   ++l+d  + di  G +l++  + a  ++++f+a+l+ ++    ++++++G +  l++ +   ++s+ e++  +d +t +k++   + +   ++ +v +++d+++ ++++++  ++G f l d+  ++t+g G
  MMETSP1137-20121227|9036_1 106 LNLVFIGHVDAGKSTFCGQILYQTEQVDARTIEKYEKEAKEKNRES--WFLAFIMDTNEEERAKGKTVEVGRAHFESKNKRYTILDAPGHKNYVPNMIAGACQADVGVLVISARKGEFEtgsaaxQTREHALLAKTLGVRLLVVVINKMDdmTVEWAKERFEECRDKLTPFLKGCgynVKKDVVFLPISALTAANVIKRMEipAASWYDGPCFLEVLDNLPVVDRNRDAPLRLPVLSKYK--DLGTVIEGKVEQGTISVGDKLWMMPNRTPVEVLNVWLDQDEVRYLIGGENARVKLKDisDEDIMPGFVLTQRGAgACAAVRRFEAQLIIVEllehKSIFSAGYTAVLHVHAMAEECSILELTASIDKKTGKKSKRPPMFVKsgAVVNVIIEVDQAVCVEQFDQCAQLGRFTLRDE--GKTIGIG 525
                 568889*******************************999987766..899****************************************************************9643333334************************965589****************99984423579***************988744789****************************965443..3345689*****************************99999************999744568****999987652678899****9886532222456789******************************999988776511567777899*******************9876..5666666 PP

>> TIGR00485  EF-Tu: translation elongation factor Tu
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  137.6   0.4   2.9e-43   9.8e-41       9     390 ..     102     528 ..      94     531 .. 0.76

  Alignments for each domain:
  == domain 1    score: 137.6 bits;  conditional E-value: 2.9e-43
   TIGR00485   9 skphvnvgtighvdhgkttltaaittvlakegkaaakkyde...............idkapeekargitintahveyetekrhyahvdcpghadyvknmitgaaqmdgailvvsaadg......pmpqtrehillarqvgvpklvvflnkvdlvdde...ellelvelevrellseydfpg.ddvpivrgsalkale.......gdaeweekilelmeavdeyiptperevdkpfllaiedvfsitgrgtvvtgrvergevkvgeeveivglketkkttvtgvemfkklldeakagdnvgvllrgvkkeeiergqvlakp..gsikphkkfeaevyvlkkeeggrhtpffsgyrpqfylrtt.......dvtgkielpeg......vemvlpgdnvkltvelispvaleegl......rfaireggrtvgagvvs 390
                 +++h+n+  ighvd gk+t++  i     +    +++ky++               +d+  ee+a+g t++  +  +e++++ y+ +d pgh +yv nmi+ga q d ++lv+sa  g      +  qtreh lla+ +gv  lvv +nk+d ++ e   e  e    ++  +l+  +++  +dv  +  sal a +         a+w +       +v +++p  +r+ d p+ l++   +  +  gtv+ g+ve+g++ vg+++ ++  +  +   v  v + + ++     g+n+ v l+ ++ e+i  g vl++   g++ + ++fea++ +++  e   ++ f +gy   +++ +        ++t +i++++g        +v  g  v++ +e+ ++v++e+        rf++r+ g+t+g g + 
  MMETSP1137-20121227|9036_1 102 EREHLNLVFIGHVDAGKSTFCGQILYQTEQVDARTIEKYEKeakeknreswflafiMDTNEEERAKGKTVEVGRAHFESKNKRYTILDAPGHKNYVPNMIAGACQADVGVLVISARKGefetgsAAXQTREHALLAKTLGVRLLVVVINKMDDMTVEwakERFEECRDKLTPFLKGCGYNVkKDVVFLPISALTAANvikrmeiPAASWYDGP--CFLEVLDNLPVVDRNRDAPLRLPVLSKY--KDLGTVIEGKVEQGTISVGDKLWMMPNR--TPVEVLNVWLDQDEVRYLIGGENARVKLKDISDEDIMPGFVLTQRgaGACAAVRRFEAQLIIVELLE--HKSIFSAGYTAVLHVHAMaeecsilELTASIDKKTGkkskrpPMFVKSGAVVNVIIEVDQAVCVEQFDqcaqlgRFTLRDEGKTIGIGKII 528
                 579*****************99886544433333333333211122222345455469999*****************************************************9765222222678************************98887723355555556677778888887526888889999999884443333233333322..344677789**************97655..6889*****************9987655..455688999999*******************************9622579999******99997766..344566789999888764222222267788877777666554446888999999999999999886422223349*************886 PP

>> TIGR00475  selB: selenocysteine-specific translation elongation factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.0   0.0      0.16        55       2      20 ..     107     125 ..     106     145 .. 0.81
   2 !   94.3   0.0   4.6e-30   1.6e-27      29     282 ..     162     437 ..     156     475 .. 0.78

  Alignments for each domain:
  == domain 1    score: 0.0 bits;  conditional E-value: 0.16
   TIGR00475   2 iiataGHvDHGKttLlkal 20 
                 +++  GHvD GK t   ++
  MMETSP1137-20121227|9036_1 107 NLVFIGHVDAGKSTFCGQI 125
                 67889*******9987655 PP

  == domain 2    score: 94.3 bits;  conditional E-value: 4.6e-30
   TIGR00475  29 PeEkKRGltiDlGyaylpledkvlgliDvPGHekflknalagvggidaalLvvdadeG......vkaqtkEHLavlkllgikelivvltKaDrvd....eeevkevEeelkeilee..eeflknakivkvsAktGqG.ieeLkke.........lknLlesldak..dkqkplrlaiDraFkvKGaGtvvtGtafsGevkvgDelvlepinkkvrvkalqaqnqsvekavAGqRialnladvdkeklkRGllilkpeepkkrvvvklkaevklkelqk 282
                  eE+ +G t+++G a ++ ++k+ +++D+PGH++++ n++ag + +d  +Lv+ a  G       + qt+EH +++k lg++ l+vv++K+D +     +e+ +e   +l  +l+   +++ k+  ++ +sA t    i+ +            ++++l+ l     +++ plrl++ +    K  Gtv+ G + +G++ vgD+l++ p   +v v ++   + +v+  + G+   + l+d+  e++  G++  +        v ++ a++ + el  
  MMETSP1137-20121227|9036_1 162 EEERAKGKTVEVGRAHFESKNKRYTILDAPGHKNYVPNMIAGACQADVGVLVISARKGefetgsAAXQTREHALLAKTLGVRLLVVVINKMDDMTvewaKERFEECRDKLTPFLKGcgYNVKKDVVFLPISALTAANvIKRMEIPaaswydgpcFLEVLDNLPVVdrNRDAPLRLPVLSK--YKDLGTVIEGKVEQGTISVGDKLWMMPNRTPVEVLNVWLDQDEVRYLIGGENARVKLKDISDEDIMPGFVLTQRGAGACAAVRRFEAQLIIVELLE 437
                 57889**************************************************998444444578*************************87511224566677778999999722555677777889999976514444322111112222334444443333367889***99875..59******************************************************************9888877777777888888776666544 PP

>> TIGR03680  eif2g_arch: translation initiation factor 2, gamma subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.6   0.0   3.6e-22   1.2e-19       5     252 ..     105     369 ..     101     377 .. 0.75

  Alignments for each domain:
  == domain 1    score: 68.6 bits;  conditional E-value: 3.6e-22
   TIGR03680   5 evniglvGhvDhGkttl.......vkaltGvwtdthseelkrgisiklGyadaeikkceeceepeaytteekceecgsetellrkvsfvDaPGhetLmatmlsGaalmdgalLviaane.....evPqpqtkehlvaleiigiknivivqnkidlvskekalenyeeike....fvkg...tvaenapiiPvsalkkvnidvlleale.keiptperdldkdalllvarsfd..vnkPGteieklkGGviGGslvqGklkvgdeieirPG 252
                 ++n+ ++GhvD Gk+t        ++++    +++++ e k     +  +  a i++ +e e+ +  t+e    +   e+   ++ +++DaPGh   +  m++Ga+  d  +Lvi+a +          qt+eh    + +g++ +v+v nk+d ++ e a e++ee ++    f+kg   +v ++   +P+sal  +n+   +e  + +  + p   +  d l +v r  d  +  P  +  k  G vi G + qG++ vgd++ + P 
  MMETSP1137-20121227|9036_1 105 HLNLVFIGHVDAGKSTFcgqilyqTEQVDARTIEKYEKEAKEK--NRESWFLAFIMDTNEEERAKGKTVEVGRAH--FES-KNKRYTILDAPGHKNYVPNMIAGACQADVGVLVISARKgefetGSAAXQTREHALLAKTLGVRLLVVVINKMDDMTVEWAKERFEECRDkltpFLKGcgyNVKKDVVFLPISALTAANVIKRMEIPAaSWYDGPCFLEVLDNLPVVDRNRDapLRLPVLSKYKDLGTVIEGKVEQGTISVGDKLWMMPN 369
                 68999**********9822222223344455556666666653..466777778888888887777777764333..344.4566799*****************************862222235678************************************9876444449998433467888899*********98888865514556666555556665666655522678988777777*****************9988885 PP

>> TIGR01394  TypA_BipA: GTP-binding protein TypA/BipA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.8   0.0     1e-16   3.5e-14       3     238 ..     107     369 ..     105     386 .. 0.77

  Alignments for each domain:
  == domain 1    score: 49.8 bits;  conditional E-value: 1e-16
   TIGR01394   3 niaiiahvDhGkttlvDklLkqsgvlrek......eeveer.........vmDsndlererGitilakntavkykdtkinivDtPGhaDfGGevervlsmvdgvlllvDaseGpl......pqtr..fvlkkalelglkpivvinkiDr.....pdarpeevvdevfdLfvelgad.deqldfpvvyas.akeGvasleeedesedleplfdailehvpaPkadkdeplqllvttldydeylGriaigrverGkvkkgqqvallkk 238
                 n+  i hvD Gk t+  ++L q+++++++      +e +e+         +mD+n+ er +G t+    +  + k+ +  i+D+PGh ++  ++       d  +l++ a +G +       qtr    l k+l ++l  +vvink+D      +++r ee  d+   ++  +g + ++++ f  + a  a + +  +e +  s    p f  +l+++p    ++d+pl+l v +  + + lG ++ g+ve+G++  g+++ ++ +
  MMETSP1137-20121227|9036_1 107 NLVFIGHVDAGKSTFCGQILYQTEQVDARtiekyeKEAKEKnreswflafIMDTNEEERAKGKTVEVGRAHFESKNKRYTILDAPGHKNYVPNMIAGACQADVGVLVISARKGEFetgsaaXQTRehALLAKTLGVRL-LVVVINKMDDmtvewAKERFEECRDKLTPFLKGCGYNvKKDVVFLPISALtAANVIKRMEIPAASWYDGPCFLEVLDNLPVVDRNRDAPLRLPVLS--KYKDLGTVIEGKVEQGTISVGDKLWMMPN 369
                 7889******************99655431111111122212244555558***********************************************************9997533333369984458999999998.57899**99722222467889999999999999887644455565566650455555556666777778**********************99865..45559*****************9988765 PP

>> TIGR00231  small_GTP: small GTP-binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.3   0.0   5.8e-12     2e-09       4     127 ..     106     263 ..     103     305 .. 0.79

  Alignments for each domain:
  == domain 1    score: 35.3 bits;  conditional E-value: 5.8e-12
   TIGR00231   4 ikivivGhvdvGKstLlnsllknkisiteskpgvtrdyvteqieedGkt................................ykvnllDTaGqedfdairrlyvreverslevvdivilvldveegl......ekqtkeiiheakkkgvpi.ilvvnKiDlkd......d 127
                  ++v++Ghvd+GKst   ++l+++   ++ ++ + ++y++e  +e++ +                                ++ ++lD +G++ +       v++  + ++ +d+ +lv+++++g+        qt+e +  ak+ gv + ++v+nK+D  +       
  MMETSP1137-20121227|9036_1 106 LNLVFIGHVDAGKSTFCGQILYQT---EQVDARTIEKYEKE-AKEKNREswflafimdtneeerakgktvevgrahfesknKRYTILDAPGHKNY-------VPNMIAGACQADVGVLVISARKGEfetgsaAXQTREHALLAKTLGVRLlVVVINKMDDMTvewakeR 263
                 689********************9...33335677788887.666665679999999999999999999**************************.......*********************99733222235788888888888998625678****9886555542 PP

>> TIGR00487  IF-2: translation initiation factor IF-2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0      0.33   1.1e+02      91     107 ..     109     125 ..      82     135 .. 0.72
   2 !   32.7   0.1   2.2e-11   7.4e-09     115     239 ..     164     300 ..     152     369 .. 0.74

  Alignments for each domain:
  == domain 1    score: -0.9 bits;  conditional E-value: 0.33
   TIGR00487  91 timGhvDhGktsLLdsi 107
                   +GhvD Gk ++  +i
  MMETSP1137-20121227|9036_1 109 VFIGHVDAGKSTFCGQI 125
                 457*******9987665 PP

  == domain 2    score: 32.7 bits;  conditional E-value: 2.2e-11
   TIGR00487 115 geaGGitqhiGayqvekedkkkitflDtPGheaftsmrarGakvtDivvlvvaadDG......vkpqtieaiehakaanvPi.ivainkiDkpeanpDrvkqelseyglvpeewG......Getifvpvsalkgkgid 239
                 + a G t ++G  + e ++k   t lD+PGh+ +      Ga  +D+ vlv++a  G         qt e    ak+ +v + +v+ink+D  +++  + + e  +  l p   G       ++ f+p+sal+  ++ 
  MMETSP1137-20121227|9036_1 164 ERAKGKTVEVGRAHFESKNK-RYTILDAPGHKNYVPNMIAGACQADVGVLVISARKGefetgsAAXQTREHALLAKTLGVRLlVVVINKMDDMTVEWAKERFEECRDKLTPFLKGcgynvkKDVVFLPISALTAANVI 300
                 45789999********8777.79***********998899**************998444334467999999999999998527889****99988665544443334443322211111147788888888887775 PP

>> TIGR00484  EF-G: translation elongation factor G
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.0   0.0   1.5e-09   5.3e-07      11     146 ..     106     261 ..      99     275 .. 0.73

  Alignments for each domain:
  == domain 1    score: 26.0 bits;  conditional E-value: 1.5e-09
   TIGR00484  11 rniGisahidaGktttterilfytgkihk..ig....evh..dGaa.....tmdwmeqekerGititsaattvewkdfrinlidtPGhvdftveverslrvldGavavldavaG......vepqsetvwrqakkyevPri.vfvnkmdkiGanflk 146
                  n+    h+daGk+t   +il+ t+++ +  i+    e +  + ++      md  e e+ +G t+    ++ e k+ r  ++d+PGh ++  ++       d  v+v+ a  G         q+      ak+ +v  + v +nkmd +  +  k
  MMETSP1137-20121227|9036_1 106 LNLVFIGHVDAGKSTFCGQILYQTEQVDArtIEkyekEAKekNRESwflafIMDTNEEERAKGKTVEVGRAHFESKNKRYTILDAPGHKNYVPNMIAGACQADVGVLVISARKGefetgsAAXQTREHALLAKTLGVRLLvVVINKMDDMTVEWAK 261
                 5778889*****************9865321431112444222222233337******************************************99999999*******999884222222345555555678888876515679***99887765 PP

>> TIGR01393  lepA: GTP-binding protein LepA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.7   0.0   1.8e-08     6e-06       5     238 ..     107     380 ..     103     429 .. 0.64

  Alignments for each domain:
  == domain 1    score: 22.7 bits;  conditional E-value: 1.8e-08
   TIGR01393   5 nfsiiahidhGkstladrllektkavserelkeq................lldsldlererGitikaqavrlkykakdgeeyvlnlidtPGhvdfsyevsrslaaceGalllvdaaqG......veaqtlanvylalekdle.iiPvinkidlPsad.....vervkkeieevi...Gldaeeail...vsaktGigieelle.............aivkkvpaPkgdkeaplkalifdsvydayrGvvvyvrvveGkikkgdkikllstgkeyeveevgv 238
                 n+  i h+d Gkst++ ++l +t+ v+ r +++                 ++d+ + er +G t+ +   ++     ++++    ++d+PGh ++  ++      ++  +l++ a +G         qt  ++ la    ++ ++ vink+d  + +      e+ ++++  ++   G++ ++ ++   +sa t  ++ + +e             ++++++p    +++apl+  ++ s y    G v+  +v +G+i++gdk+ ++ + +  ev +v +
  MMETSP1137-20121227|9036_1 107 NLVFIGHVDAGKSTFCGQILYQTEQVDARTIEKYekeakeknreswflafIMDTNEEERAKGKTVEVGRAHF-----ESKNKRYTILDAPGHKNYVPNMIAGACQADVGVLVISARKGefetgsAAXQTREHALLAKTLGVRlLVVVINKMDDMTVEwakerFEECRDKLTPFLkgcGYNVKKDVVflpISALTAANVIKRMEipaaswydgpcflEVLDNLPVVDRNRDAPLRLPVL-SKYKD-LGTVIEGKVEQGTISVGDKLWMMPNRTPVEVLNVWL 380
                 8999*******************9999876543300111112222222224555555666666665544433.....3334445689*******998877766666777899999998433222234666666666555554246799**9966554111114556666665544446776554332347898888876554433333333333336888999999999999997777.45544.588888899999999999999999988888887765 PP

>> TIGR00503  prfC: peptide chain release factor 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.1   0.0   2.9e-08   9.8e-06      13     117 ..     107     220 ..      96     271 .. 0.75

  Alignments for each domain:
  == domain 1    score: 22.1 bits;  conditional E-value: 2.9e-08
   TIGR00503  13 tfaiishpdaGkttltekvllyGnaiqeaGavk.argsqrsaksdw.....m...emekqrGisittsvlqfdyrdklvnlldtpGhedfsedtyrtltavdsalmvidaakGv 117
                 ++  i h daGk+t+  ++l   + ++     k  + ++++ +  w     m   e e+ +G ++      f+ ++k   +ld+pGh+++  +     + +d  ++vi a kG 
  MMETSP1137-20121227|9036_1 107 NLVFIGHVDAGKSTFCGQILYQTEQVDARTIEKyEKEAKEKNRESWflafiMdtnEEERAKGKTVEVGRAHFESKNKRYTILDAPGHKNYVPNMIAGACQADVGVLVISARKGE 220
                 67889*************99888777655544523444555555663332222224577788888888899*****************************************94 PP

>> TIGR03594  GTPase_EngA: ribosome-associated GTPase EngA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.5   0.0   0.00028     0.095     154     199 ..      84     129 ..      50     148 .. 0.80
   2 !    5.3   0.0    0.0053       1.8     287     335 ..     243     299 ..     167     307 .. 0.63

  Alignments for each domain:
  == domain 1    score: 9.5 bits;  conditional E-value: 0.00028
   TIGR03594 154 deileelpeeeeeeeeeeeeepikiaiiGrpNvGKStLvNallgee 199
                 d + ++  +++++  e++e+e++++ +iG   +GKSt++ ++l ++
  MMETSP1137-20121227|9036_1  84 DDVADSSANQKHSWVERDEREHLNLVFIGHVDAGKSTFCGQILYQT 129
                 4555555555554445555678*****************9999775 PP

  == domain 2    score: 5.3 bits;  conditional E-value: 0.0053
   TIGR03594 287 kalvivvNKwDlv...kdekeleelkkeleeklkfl.....kfapivfiSAltgkgv 335
                 + lv+v+NK+D +     ++++ee++++l+  lk +     k + ++ iSAlt  +v
  MMETSP1137-20121227|9036_1 243 RLLVVVINKMDDMtveWAKERFEECRDKLTPFLKGCgynvkKDVVFLPISALTAANV 299
                 5689999***99944334455555555555444433111113344555666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (618 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       244  (0.0594832); expected 82.0 (0.02)
Passed bias filter:                      157  (0.038274); expected 82.0 (0.02)
Passed Vit filter:                        33  (0.00804486); expected 4.1 (0.001)
Passed Fwd filter:                        12  (0.0029254); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.73u 0.20s 00:00:00.93 Elapsed: 00:00:00.56
# Mc/sec: 1431.04
//
Query:       MMETSP1137-20121227|9037_1  [L=177]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (177 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        56  (0.0136519); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.14s 00:00:00.31 Elapsed: 00:00:00.28
# Mc/sec: 805.59
//
Query:       MMETSP1137-20121227|9038_1  [L=246]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (246 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        83  (0.020234); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.14s 00:00:00.35 Elapsed: 00:00:00.36
# Mc/sec: 901.93
//
Query:       MMETSP1137-20121227|9039_1  [L=546]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.1e-27   94.1   0.0      2e-27   93.3   0.0    1.4  1  TIGR03903 TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
    5.6e-05   20.5   0.0     0.0001   19.7   0.0    1.3  1  TIGR03724 arch_bud32: Kae1-associated kinase Bud32


Domain annotation for each model (and alignments):
>> TIGR03903  TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   93.3   0.0     1e-30     2e-27       1     183 [.     113     289 ..     113     309 .. 0.91

  Alignments for each domain:
  == domain 1    score: 93.3 bits;  conditional E-value: 1e-30
   TIGR03903   1 etghkvaikllRedaaeeerlvaRFrReialCarLshPnivaLlDsGeaedgllFavFeyveGrtlrevLaadGaLpaaetgrLmlqvLDalaaahdaGvvhRDLkPqnimvsaadvesha...kvLDFGigaLlpgvedadeatltrttevlGsPaYaaPe..qLRgepvtaksDlYaWGLivleCL 183
                 etgh+va+k+++ +   +er     +Re+a  a L+h niv+L    ++++ + + v ey +   l + L+++G  + +e  + + q L++la  h+ G+ hRDLk +n+m++ +++ s a   k+ DFG++aL p           + +   GsP YaaPe  q +ge   +ksD+++ G+i++  L
  MMETSP1137-20121227|9039_1 113 ETGHQVAVKIIKRNR-LKERAELLLQREVANHALLRHANIVRLYTWIKTPQ-RYYLVMEYCPHGDLLAFLNQKGRFTDQEARHFLRQLLEGLAFCHSLGIYHRDLKLENLMLTDSEDASGAlmiKIADFGLSALKPI---------GLLETHCGSPLYAAPElmQDKGEYDGSKSDMWSVGVILFAML 289
                 69*********9984.456667779*********************99998.99*************************************************************999987555789*******983.........3334468*********666789***************98766 PP

>> TIGR03724  arch_bud32: Kae1-associated kinase Bud32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.0   4.9e-08    0.0001      68     137 ..     160     243 ..     119     246 .. 0.80

  Alignments for each domain:
  == domain 1    score: 19.7 bits;  conditional E-value: 4.9e-08
   TIGR03724  68 dpeekkivmeyiegkklkdlleekel.......ellkevGelvgklHkagivhgDlttsNiivk.....ddk...lyliDfGLgk 137
                 +p+++ +vmey    +l   l++k         ++l+++ e ++ +H+ gi+h Dl  +N++++     +     + + DfGL+ 
  MMETSP1137-20121227|9039_1 160 TPQRYYLVMEYCPHGDLLAFLNQKGRftdqearHFLRQLLEGLAFCHSLGIYHRDLKLENLMLTdsedaS-GalmIKIADFGLSA 243
                 678899******9999999999987788999999*****************************8333321.22213456888875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (546 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.37u 0.15s 00:00:00.52 Elapsed: 00:00:00.75
# Mc/sec: 960.88
//
Query:       MMETSP1137-20121227|9040_1  [L=312]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (312 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        91  (0.0221843); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.16s 00:00:00.42 Elapsed: 00:00:00.33
# Mc/sec: 1247.90
//
Query:       MMETSP1137-20121227|9041_1  [L=200]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (200 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        32  (0.00780107); expected 82.0 (0.02)
Passed bias filter:                       32  (0.00780107); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.15s 00:00:00.32 Elapsed: 00:00:00.25
# Mc/sec: 1055.91
//
Query:       MMETSP1137-20121227|9042_1  [L=309]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (309 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        83  (0.020234); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.15s 00:00:00.42 Elapsed: 00:00:00.45
# Mc/sec: 906.33
//
Query:       MMETSP1137-20121227|9043_1  [L=183]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.1e-42  142.6   0.0    1.3e-42  142.3   0.0    1.1  1  TIGR03047 PS_II_psb28: photosystem II reaction center protein Psb28


Domain annotation for each model (and alignments):
>> TIGR03047  PS_II_psb28: photosystem II reaction center protein Psb28
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  142.3   0.0   3.2e-46   1.3e-42       1     109 []      74     182 ..      74     182 .. 0.99

  Alignments for each domain:
  == domain 1    score: 142.3 bits;  conditional E-value: 3.2e-46
   TIGR03047   1 iqfiegidEevvpdvrltrsrdgstgtallrfeepkalekeksktkeitglyliDeEGeletrevkakfvnGklkaveavyelkseeewdRfmRFmeryaeanglgysk 109
                 i+fi+g+ E+vvpdv+ltrsrdgstg a+++f++p+ l++ +s+ +e+tg+yl D+EGel t ev+a fvnGk++ v+ v++++   ewdRfmRFmeryae+nglg+sk
  MMETSP1137-20121227|9043_1  74 IEFIKGVPEPVVPDVKLTRSRDGSTGVATFTFDNPSFLSSASSELGETTGMYLNDDEGELRTSEVTATFVNGKPRIVKGVVVMRGPGEWDRFMRFMERYAESNGLGFSK 182
                 89*********************************************************************************************************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (183 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        49  (0.0119454); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.17u 0.13s 00:00:00.30 Elapsed: 00:00:00.44
# Mc/sec: 548.95
//
Query:       MMETSP1137-20121227|9045_1  [L=249]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (249 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        62  (0.0151146); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.16s 00:00:00.37 Elapsed: 00:00:00.28
# Mc/sec: 1133.29
//
Query:       MMETSP1137-20121227|9046_1  [L=88]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (88 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       100  (0.0243784); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.17s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 414.82
//
Query:       MMETSP1137-20121227|9047_1  [L=146]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (146 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        44  (0.0107265); expected 82.0 (0.02)
Passed bias filter:                       35  (0.00853242); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.13s 00:00:00.28 Elapsed: 00:00:00.28
# Mc/sec: 688.23
//
Query:       MMETSP1137-20121227|9048_1  [L=555]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0015   14.5   0.1     0.0053   12.7   0.0    1.7  2  TIGR00870 trp: transient-receptor-potential calcium channel protein


Domain annotation for each model (and alignments):
>> TIGR00870  trp: transient-receptor-potential calcium channel protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.7   0.0   1.3e-06    0.0053      88     163 ..     137     216 ..     111     233 .. 0.75
   2 ?   -1.0   0.0     0.018        73     130     159 ..     291     323 ..     256     367 .. 0.72

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 1.3e-06
   TIGR00870  88 Lhaiskelvdaveailllllkaarksltlselandestseftkg..italilAihkqnyeivklLlekgasve...arakg 163
                 +    +e  +  e ++ +l + ar+ +  +e++  +++ + +++   t+l+lA+    +e+ +lL+e +a++    a+  +
  MMETSP1137-20121227|9048_1 137 IAEYNLEQEERRERLAGHLSEGARGVYISKEIVARRNFLDTSADnqVTPLMLAARSGHVEVMQLLIEERADITrrsAK-GC 216
                 45555566666777777888888888878888888888887777335*************************964322.33 PP

  == domain 2    score: -1.0 bits;  conditional E-value: 0.018
   TIGR00870 130 kgitalilAihkqnyeivklLlekgasve...a 159
                  g t+l+l     +  + klLl+ +a v+    
  MMETSP1137-20121227|9048_1 291 YGYTPLMLVSGYADAYTMKLLLDAKAVVSkqeW 323
                 478999999999999999999999998886662 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (555 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        89  (0.0216967); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.15s 00:00:00.52 Elapsed: 00:00:00.45
# Mc/sec: 1627.87
//
Query:       MMETSP1137-20121227|9050_1  [L=283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.1e-78  259.3   0.1    6.3e-78  258.9   0.1    1.1  1  TIGR00021 rpiA: ribose 5-phosphate isomerase A


Domain annotation for each model (and alignments):
>> TIGR00021  rpiA: ribose 5-phosphate isomerase A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  258.9   0.1   1.5e-81   6.3e-78       2     217 ..      49     278 ..      47     279 .. 0.92

  Alignments for each domain:
  == domain 1    score: 258.9 bits;  conditional E-value: 1.5e-81
   TIGR00021   2 kraaaeaaaelvedgmvvGlGtGsTvkylieelgervkkesl.kikgvptSkkteelakelgiplssldevkeldlaiDGADevdeklqliKGgGgallrEKivasaskrfiviaDesKlvkklg.kfplPvevvpfaakavleklek....egleaelr........kaekagpvvTdngnyilDvkfekiiedpealeeelksipGvvetGlfidmadkvivgtkdgv 217
                 k   ++a+ ++v++gmvvGlGtGsT+++++e+lge++k+++l +i++vptS +t+e+a+elgipl +ld+++eld+aiDGADevd++l+l+KGgGgallrEK+v+  +k+fivi+DesKl + lg  fplPve+ pf++k++l+k+++    +g+ea+lr        ka  ++p vTdngnyi+D+ f++ i+dp + +eelk+ +Gvv++Glf++m+++vi++ kdg+
  MMETSP1137-20121227|9050_1  49 KLVGYKAIDDYVTSGMVVGLGTGSTAAFAVERLGEKMKAGELtDIVAVPTSIRTKEQAEELGIPLVTLDTHSELDVAIDGADEVDPDLNLVKGGGGALLREKMVEVCAKKFIVIVDESKLCEGLGpGFPLPVEITPFCWKHTLRKVAElpslAGCEAKLRlgsaatgsKADGEEPAVTDNGNYIIDLFFTEPIKDPVKAAEELKNQVGVVDHGLFCGMTTAVIIAGKDGI 278
                 5556677889*****************************7777**********************************************************************************99*****************9999999988999999333222212245689*****************************************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (283 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       136  (0.0331546); expected 82.0 (0.02)
Passed bias filter:                       97  (0.023647); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.24u 0.18s 00:00:00.42 Elapsed: 00:00:00.35
# Mc/sec: 1067.23
//
Query:       MMETSP1137-20121227|9052_1  [L=359]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (359 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        83  (0.020234); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.16s 00:00:00.42 Elapsed: 00:00:00.39
# Mc/sec: 1214.98
//
Query:       MMETSP1137-20121227|9053_1  [L=300]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (300 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       108  (0.0263286); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.12s 00:00:00.35 Elapsed: 00:00:00.39
# Mc/sec: 1015.30
//
Query:       MMETSP1137-20121227|9054_1  [L=353]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (353 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        85  (0.0207216); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.13s 00:00:00.39 Elapsed: 00:00:00.43
# Mc/sec: 1083.54
//
Query:       MMETSP1137-20121227|9055_1  [L=856]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.7e-29  101.0  13.7    2.6e-12   44.5   0.0    5.3  6  TIGR00601 rad23: UV excision repair protein Rad23
  ------ inclusion threshold ------
      0.014   12.8   0.0        2.3    5.5   0.0    2.3  2  TIGR00084 ruvA: Holliday junction DNA helicase RuvA


Domain annotation for each model (and alignments):
>> TIGR00601  rad23: UV excision repair protein Rad23
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.4   0.0   5.4e-15   1.1e-11       1      93 [.       1      89 [.       1     100 [. 0.86
   2 !    9.7   0.0   4.7e-05     0.096     158     195 ..     127     164 ..     105     253 .. 0.89
   3 ?   -1.7   0.6      0.13   2.7e+02      85     123 ..     335     372 ..     320     400 .. 0.60
   4 ?   -3.9   0.4      0.65   1.3e+03     101     145 ..     462     506 ..     441     515 .. 0.64
   5 !   10.2   0.3   3.4e-05     0.069     216     324 ..     552     658 ..     529     682 .. 0.71
   6 !   44.5   0.0   1.3e-15   2.6e-12     331     376 ..     811     856 .]     752     856 .] 0.90

  Alignments for each domain:
  == domain 1    score: 42.4 bits;  conditional E-value: 5.4e-15
   TIGR00601  1 vkltlKtlkqqkfkidlepdetvkelKekiesekgkdayevaqqkLiyaGkiLsDdktvkeykikekdfvvvmvskkKavkakaaePaatpes 93
                ++l ++ + ++ f ++ + d tv  +Ke i++++g   ++v  qkLi +G++L+D+  v+ y+++e df+v++ +k++  +   ++ a+ p s
  MMETSP1137-20121227|9055_1  1 MRLQVRCMDGDAFWVNTSQDATVASIKESIAEQRG---IDVIMQKLICTGRVLQDEALVSAYDLSECDFLVLVTAKPRPPSL-ITTGAPLPPS 89
                7788999999*************************...99************************************998773.3333333333 PP

  == domain 2    score: 9.7 bits;  conditional E-value: 4.7e-05
   TIGR00601 158 eetveeimemGyereeverAlRAafnnPdRAveYLltG 195
                 e+ v++++ mG+e +e   AlRAa n+   A   L +G
  MMETSP1137-20121227|9055_1 127 ESLVDRLLAMGFEPHESRNALRAAQNDTSLALAMLRSG 164
                 7889**********************999998888777 PP

  == domain 3    score: -1.7 bits;  conditional E-value: 0.13
   TIGR00601  85 aePaatpesaptptpsatpasvaekksaaPasaveeess 123
                 ++  a++++ap ++  + +a+ +++  a P+ a+++  +
  MMETSP1137-20121227|9055_1 335 TAQRAAASAAPDASC-SNNAAFSAACGAVPSCAATNVDT 372
                 333334444444443.44555555555555555544443 PP

  == domain 4    score: -3.9 bits;  conditional E-value: 0.65
   TIGR00601 101 atpasvaekksaaPasaveeessaeeeatatalesedtsaesegd 145
                 +  a+   ++ +aPa+ v    s+e  ++   ++s d+s++ +g+
  MMETSP1137-20121227|9055_1 462 PACAAARDESLEAPAAPVCALASVESLEQFMKENSGDGSGSGDGS 506
                 233444556667888888887777777777777777777776664 PP

  == domain 5    score: 10.2 bits;  conditional E-value: 3.4e-05
   TIGR00601 216 astetpqeddvaaaaaqae...teeaateaasGedpleflrnq.pqfqqlRqvvqqnPelLealLqqigkenPqLlqqisqhqEeFlqllnEpveelegesdlvegtGeiaea 324
                 as ++  ++dv +  ++a+    +  a e+++G+  l+f r++ +q+q+l+  v       +a L+++ +e+  ++ +i +++  F+ lln + +el++e d      e aea
  MMETSP1137-20121227|9055_1 552 ASESSETSSDVRGCSNGAGksaDQPLAAETSGGQRLLNFARDIlKQLQELKLEV------ANAQLNHLLNEDDSIRDAIAAQPADFVTLLNMSEGELTDEYDRDLSPHESAEA 658
                 344444455555544444444244455666669999*****9747888888655......45667777789*************************99987765554455555 PP

  == domain 6    score: 44.5 bits;  conditional E-value: 1.3e-15
   TIGR00601 331 qiqvtpeekeaieRLkalGFdrdlviqaylACdknEelAanyLleq 376
                 +  +t+e++ea+  L alG+ r+ v++aylACd++ +lAan+L++q
  MMETSP1137-20121227|9055_1 811 DAALTEEDEEAVTMLTALGYSRSAVVEAYLACDRDQNLAANFLMDQ 856
                 6789***************************************986 PP

>> TIGR00084  ruvA: Holliday junction DNA helicase RuvA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   0.0    0.0011       2.3     144     177 ..     123     156 ..     105     164 .. 0.84
   2 ?    4.7   0.0    0.0019       3.9     142     170 ..     813     841 ..     784     854 .. 0.68

  Alignments for each domain:
  == domain 1    score: 5.5 bits;  conditional E-value: 0.0011
   TIGR00084 144 eaaeeelleaLksLGykqkeiqkalkkikekedl 177
                  +a+e l++ L ++G++++e ++al+ +++   l
  MMETSP1137-20121227|9055_1 123 VDADESLVDRLLAMGFEPHESRNALRAAQNDTSL 156
                 5678999*******************99987765 PP

  == domain 2    score: 4.7 bits;  conditional E-value: 0.0019
   TIGR00084 142 aaeaaeeelleaLksLGykqkeiqkalkk 170
                 a ++++ee+++ L +LGy +  + +a   
  MMETSP1137-20121227|9055_1 813 ALTEEDEEAVTMLTALGYSRSAVVEAYLA 841
                 33445599***********9988776555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (856 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       164  (0.0399805); expected 82.0 (0.02)
Passed bias filter:                       97  (0.023647); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.56u 0.16s 00:00:00.72 Elapsed: 00:00:01.13
# Mc/sec: 991.08
//
Query:       MMETSP1137-20121227|9056_1  [L=183]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0015   15.9   0.1      0.002   15.6   0.0    1.2  1  TIGR03420 DnaA_homol_Hda: DnaA regulatory inactivator Hda
     0.0094   13.5   0.1      0.013   13.0   0.1    1.2  1  TIGR03771 anch_rpt_ABC: anchored repeat-type ABC transporter, ATP-binding subunit
  ------ inclusion threshold ------
      0.025   11.0   0.1      0.024   11.0   0.0    1.2  1  TIGR00955 3a01204: pigment precursor permease
      0.036   10.5   0.0      0.035   10.5   0.0    1.1  1  TIGR01192 chvA: glucan exporter ATP-binding protein


Domain annotation for each model (and alignments):
>> TIGR03420  DnaA_homol_Hda: DnaA regulatory inactivator Hda
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   1.9e-06     0.002      23      62 ..      81     120 ..      57     151 .. 0.70

  Alignments for each domain:
  == domain 1    score: 15.6 bits;  conditional E-value: 1.9e-06
   TIGR03420  23 aellaalrelaeakaerllylwGesgsGksHLLqAacaaa 62 
                 + + +++++++ea++++ l + G+ g Gk+H + Aa ++ 
  MMETSP1137-20121227|9056_1  81 SDVSEQISSYLEANTGQYLLILGPRGAGKTHAVTAALNNR 120
                 33445566669********************999988754 PP

>> TIGR03771  anch_rpt_ABC: anchored repeat-type ABC transporter, ATP-binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   0.1   1.3e-05     0.013       1      40 [.      91     127 ..      91     148 .. 0.78

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 1.3e-05
   TIGR03771   1 lsvdkGellgllGpnGaGkttllrailglikvakGsvkva 40 
                 l++++G++l +lGp GaGkt  + a l   ++++G v+++
  MMETSP1137-20121227|9056_1  91 LEANTGQYLLILGPRGAGKTHAVTAAL---NNRQGVVQLT 127
                 67899***************8666554...5566776655 PP

>> TIGR00955  3a01204: pigment precursor permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   2.3e-05     0.024      35      75 ..      71     121 ..      12     171 .. 0.73

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 2.3e-05
   TIGR00955  35 k.......pekellknvsG..vaksGellAvlGsSGaGKtTLlna.lafrs 75 
                 k       +++ + +++s   +a++G+ l +lG+ GaGKt  + a l +r+
  MMETSP1137-20121227|9056_1  71 KypngnavNRSDVSEQISSylEANTGQYLLILGPRGAGKTHAVTAaLNNRQ 121
                 1334444566677777776336899***************76654044443 PP

>> TIGR01192  chvA: glucan exporter ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   3.4e-05     0.035     353     408 ..      86     143 ..      17     152 .. 0.80

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 3.4e-05
   TIGR01192 353 dvs..feakagqtvaivgptgagkttlinllqrvydpksgqilidgvdiatvtreslr 408
                 ++s  +ea +gq + i+gp gagkt  +       +  +   l d v ++++  + l+
  MMETSP1137-20121227|9056_1  86 QISsyLEANTGQYLLILGPRGAGKTHAVTAALNNRQGVVQLTLADSVGVNSLYSKVLQ 143
                 4443368999***************998876666666676777788888877776665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (183 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       253  (0.0616772); expected 82.0 (0.02)
Passed bias filter:                      217  (0.052901); expected 82.0 (0.02)
Passed Vit filter:                        56  (0.0136519); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.25u 0.16s 00:00:00.41 Elapsed: 00:00:00.43
# Mc/sec: 561.72
//
Query:       MMETSP1137-20121227|9057_1  [L=37]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (37 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        19  (0.00463189); expected 82.0 (0.02)
Passed bias filter:                       19  (0.00463189); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:00.39
# Mc/sec: 125.22
//
Query:       MMETSP1137-20121227|9058_1  [L=691]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (691 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       110  (0.0268162); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.16s 00:00:00.60 Elapsed: 00:00:00.41
# Mc/sec: 2224.50
//
Query:       MMETSP1137-20121227|9059_1  [L=314]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (314 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        69  (0.0168211); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.11s 00:00:00.37 Elapsed: 00:00:00.37
# Mc/sec: 1120.12
//
Query:       MMETSP1137-20121227|9060_1  [L=692]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (692 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        55  (0.0134081); expected 82.0 (0.02)
Passed bias filter:                       44  (0.0107265); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.12s 00:00:00.53 Elapsed: 00:00:00.80
# Mc/sec: 1141.71
//
Query:       MMETSP1137-20121227|9061_1  [L=71]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (71 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        33  (0.00804486); expected 82.0 (0.02)
Passed bias filter:                       33  (0.00804486); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.14s 00:00:00.27 Elapsed: 00:00:00.30
# Mc/sec: 312.37
//
Query:       MMETSP1137-20121227|9065_1  [L=218]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (218 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        96  (0.0234032); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.16s 00:00:00.37 Elapsed: 00:00:01.06
# Mc/sec: 271.45
//
Query:       MMETSP1137-20121227|9066_1  [L=451]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.3e-21   73.4   0.0    1.4e-18   64.8   0.0    2.2  2  TIGR00614 recQ_fam: ATP-dependent DNA helicase, RecQ family
    4.6e-19   66.1   0.0    6.3e-19   65.6   0.0    1.1  1  TIGR01389 recQ: ATP-dependent DNA helicase RecQ
    9.9e-17   57.7   0.0    7.9e-16   54.7   0.0    1.9  1  TIGR04121 DEXH_lig_assoc: DEXH box helicase, DNA ligase-associated
    2.3e-12   43.8   0.0    1.8e-05   21.0   0.0    2.1  2  TIGR03817 DECH_helic: helicase/secretion neighborhood putative DEAH-box helicase
    1.1e-09   35.4   0.1    0.00012   18.7   0.0    2.2  2  TIGR00643 recG: ATP-dependent DNA helicase RecG
    1.3e-08   32.1   0.1    3.9e-08   30.6   0.0    1.6  2  TIGR01587 cas3_core: CRISPR-associated helicase Cas3
    4.1e-07   26.4   0.0    1.5e-06   24.5   0.0    1.7  2  TIGR00631 uvrb: excinuclease ABC subunit B
    3.7e-06   23.4   0.1    7.6e-06   22.3   0.0    1.5  2  TIGR00580 mfd: transcription-repair coupling factor
    0.00015   18.7   0.0       0.21    8.3   0.0    2.2  2  TIGR04095 dnd_restrict_1: DNA phosphorothioation system restriction enzyme


Domain annotation for each model (and alignments):
>> TIGR00614  recQ_fam: ATP-dependent DNA helicase, RecQ family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.4   0.0    0.0015      0.68       8      48 ..     107     147 ..     102     176 .. 0.90
   2 !   64.8   0.0     3e-21   1.4e-18     222     338 ..     321     437 ..     296     448 .. 0.88

  Alignments for each domain:
  == domain 1    score: 6.4 bits;  conditional E-value: 0.0015
   TIGR00614   8 glesfrpvqlevinavlegrdalvvmatGgGksLCyqlpav 48 
                 g+e+  p q+e+i  +l+grd l     G Gk   + +p +
  MMETSP1137-20121227|9066_1 107 GFERPSPIQEEAIPIALAGRDILARAKNGTGKTAAFVIPVL 147
                 55666799**************************9999975 PP

  == domain 2    score: 64.8 bits;  conditional E-value: 3e-21
   TIGR00614 222 kefkgksGiiYClsrkkveqvaaeLqkkglaaaaYhagleesarkevqkkflrdeiqvvvatvafGmGinkpdvRfvihyslpksiesYYqesGRaGRDglksecvlfyapaDvall 338
                  +   +  ii+C+s ++ve +a++++++g ++   ha + +++r++v ++f +  ++ +v+   f  Gi+ p v  vi ++ pks e+Y   +GR+GR g    ++ + +++D + l
  MMETSP1137-20121227|9066_1 321 AKLAINQSIIFCNSVNRVELLAKKVTELGFSCFYIHAKMLQAHRNRVFHDFRNGACRNLVSSDLFTRGIDIPSVNVVINFDFPKSAETYLHRIGRSGRFGHLGLAINLITYEDRFNL 437
                 34444555*********************************************************************************************9999999999997665 PP

>> TIGR01389  recQ: ATP-dependent DNA helicase RecQ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.6   0.0   1.4e-21   6.3e-19      10     332 ..     107     433 ..      96     447 .. 0.80

  Alignments for each domain:
  == domain 1    score: 65.6 bits;  conditional E-value: 1.4e-21
   TIGR01389  10 GyeeFRggqeeiieevldgrdvlavlPtGGGkslCYqvPaLll.....kgl.tvvisPL..isLmkDqvdqLraaGveaaalnstlsakeaqeilkalaagelklLYvaPerleqdkflellerlkiallavDeahCvsqWGhDFRpeYkrlgelaerfpkap.vialtatadaevredivekLelkdaaefvssf..dRenlafsvvkkenkkkqlleylkkereksGiiYassRkkveelaeaLeskgiealaYhaGlskkvRaeaqekFleddvkvvvatvaFGmGidksdvRfvihldlPknlesyyqeaGRaGRDGlkaeaillyseaD 332
                 G+e   + qee i   l+grd+la    G Gk   + +P L +     + + ++++ P   ++L   qv     + +  +++ st  ++ + +il+  +   ++l+  +P rl+    + + + ++  ++ +Dea  +     +F p  ++   l++  p++  v+ + at  ++v++   + ++   + ++++ +  +    ++  v++++k + l +   k   +  ii+++s ++ve la+++++ g++    ha + ++ R++  ++F +   + +v+   F  Gid + v  vi +d Pk+ e+y    GR+GR G+   ai l + +D
  MMETSP1137-20121227|9066_1 107 GFERPSPIQEEAIPIALAGRDILARAKNGTGKTAAFVIPVLERiepnkNCIqAIILVPTreLALQTSQVCRDLGKHLGLEVMVSTGGSSLKDDILRLYN--TVHLIIATPGRLLDMAQKGVANLSQCGVICLDEADKLL--SPEFMPLVEQ---LIDLMPQERqVLLFSATFPVKVKAFKDRVMKRPYEINLMEELtlKGVSQYYAFVEERQKVHCLNTLFAKLAINQSIIFCNSVNRVELLAKKVTELGFSCFYIHAKMLQAHRNRVFHDFRNGACRNLVSSDLFTRGIDIPSVNVVINFDFPKSAETYLHRIGRSGRFGHLGLAINLITYED 433
                 78888899*********************************7533332222245555542288999999544333344567789999999999999876..5788999********99999999***********8763..3456665555...555666665588888888888876555555555555555544004455689999999999999999999999999********************************************************************************************9888777666555 PP

>> TIGR04121  DEXH_lig_assoc: DEXH box helicase, DNA ligase-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.7   0.0   1.7e-18   7.9e-16      13     344 ..     110     417 ..     100     430 .. 0.82

  Alignments for each domain:
  == domain 1    score: 54.7 bits;  conditional E-value: 1.7e-18
   TIGR04121  13 eprafQkevleaaeegesglliapTGaGKTlavflpslielaakekpkkglkvlyitPLkaLakdieraleapieelgleirvelrtGDtssserarqrkkppdiLltTpEslaLllsskdaeklfkdlravvvDElHeLlgskRGdlleLaLarLrrlapel.rvvglsATvg.nleeaaevllgeekeekaklvkakekka.levesllpeeeeklPwaGhlglkaleevleeikkarttlvFtNtRsqaEllfqaLleaneelaleialhHgsldkeqRekveaalkagklravvcTssLdLGvDfgdvdlviqvGspkgvaRllQRiGRsn 344
                 +p + Q+e++  a +g++ l  a  G+GKT a ++p+l +++    +k+ ++++ + P + La ++++  +   ++lgle+ v   tG +s ++   +  ++ ++++ Tp  l  l   ++  + ++++ ++ +DE  +Ll+     ++ L   +L  l p+  +v+  sAT   +++++++ ++++    + +l++  + k   +  + ++e            ++ l+++++++  ++ +++F+N  ++ Ell ++++e+           H+ + +++R++v + +++g  r +v+   +  G+D   v+ vi+   pk++   l RiGRs+
  MMETSP1137-20121227|9066_1 110 RPSPIQEEAIPIALAGRDILARAKNGTGKTAAFVIPVLERIE---PNKNCIQAIILVPTRELALQTSQVCRDLGKHLGLEVMV--STGGSSLKDDILRLYNTVHLIIATPGRL--LDMAQKGVANLSQCGVICLDEADKLLSPE---FMPLV-EQLIDLMPQErQVLLFSATFPvKVKAFKDRVMKRPY--EINLMEELTLKGvSQYYAFVEE---------RQKVHCLNTLFAKLAINQ-SIIFCNSVNRVELLAKKVTELGFS----CFYIHAKMLQAHRNRVFHDFRNGACRNLVSSDLFTRGIDIPSVNVVINFDFPKSAETYLHRIGRSG 417
                 57889*********************************9999...77789**************************9998777..58999999999999***********987..444455566799**************985...55553.4666666665055667***96256666776666665..4555554443430444444444.........445788999999998765.79**********987777666555....5666999999******************************************************97 PP

>> TIGR03817  DECH_helic: helicase/secretion neighborhood putative DEAH-box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.0   0.0   3.9e-08   1.8e-05      22     116 ..      96     192 ..      79     224 .. 0.82
   2 !   20.7   0.0   4.7e-08   2.2e-05     294     394 ..     340     441 ..     320     446 .. 0.86

  Alignments for each domain:
  == domain 1    score: 21.0 bits;  conditional E-value: 3.9e-08
   TIGR03817  22 epdvvaaleaaGieapwqhqaraaelahaGehvvvatgtasGkslayllPvlsalaedpr.atalylaPtkalaadqlravkelee.rdvraatydG 116
                 + ++   + +aG e+p   q +a  +a aG+++   +   +Gk+ a+ +Pvl++++ +++  +a+ l Pt+ la    +++++l +  ++++ +  G
  MMETSP1137-20121227|9066_1  96 KRELLMGIFEAGFERPSPIQEEAIPIALAGRDILARAKNGTGKTAAFVIPVLERIEPNKNcIQAIILVPTRELALQTSQVCRDLGKhLGLEVMVSTG 192
                 56677778899********************************************988651689******************998744555554444 PP

  == domain 2    score: 20.7 bits;  conditional E-value: 4.7e-08
   TIGR03817 294 rlaevdaelaervaayraGylaedrreleralkdGellgvaatnalelGvdisGldavviaGfPGtvaslwqqaGraGrrgqdalvv.lvarddPldtylvh 394
                 +la+  +el+       a  l+  r ++ + +++G  + +++ + +  G+di  ++ v+   fP    ++  ++Gr+Gr g+  l++ l++ +d ++ y ++
  MMETSP1137-20121227|9066_1 340 LLAKKVTELGFSCFYIHAKMLQAHRNRVFHDFRNGACRNLVSSDLFTRGIDIPSVNVVINFDFPKSAETYLHRIGRSGRFGHLGLAInLITYEDRFNLYKIE 441
                 555555566666666678889999**********************************************************99987588999988888765 PP

>> TIGR00643  recG: ATP-dependent DNA helicase RecG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0   4.4e-06     0.002     266     325 ..     135     197 ..     128     243 .. 0.82
   2 !   18.7   0.0   2.7e-07   0.00012     481     553 ..     348     419 ..     293     441 .. 0.82

  Alignments for each domain:
  == domain 1    score: 14.7 bits;  conditional E-value: 4.4e-06
   TIGR00643 266 GsGKTvVavlallavie...sGyqvalmaPTeiLAeQhyeklrelleplgievalLtgslkkk 325
                 G+GKT   v+ +l+ ie   +  q+ +++PT  LA Q  + +r+l ++lg+ev + tg +  k
  MMETSP1137-20121227|9066_1 135 GTGKTAAFVIPVLERIEpnkNCIQAIILVPTRELALQTSQVCRDLGKHLGLEVMVSTGGSSLK 197
                 99***99999999998633267899*****************************999976554 PP

  == domain 2    score: 18.7 bits;  conditional E-value: 2.7e-07
   TIGR00643 481 pklnvallhgrlksdekeevleeFrekevdiLvaTtviEvGvdvPnatvmviedaeRfGlsqLHQLRGRvgRg 553
                   +++  +h+++ ++++++v+++Fr++ +  Lv+  +   G+d+P ++v++  d  +   + LH + GR gR 
  MMETSP1137-20121227|9066_1 348 LGFSCFYIHAKMLQAHRNRVFHDFRNGACRNLVSSDLFTRGIDIPSVNVVINFDFPKSAETYLHRI-GRSGRF 419
                 34677889*****************************************99888777777777766.666664 PP

>> TIGR01587  cas3_core: CRISPR-associated helicase Cas3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0      0.44     2e+02       5      42 ..     131     169 ..     128     198 .. 0.78
   2 !   30.6   0.0   8.5e-11   3.9e-08     115     320 ..     220     420 ..     196     441 .. 0.74

  Alignments for each domain:
  == domain 1    score: -1.3 bits;  conditional E-value: 0.44
   TIGR01587   5 eAPtGyGKteaallwalklikkqk.adkvifalPtrata 42 
                 +A  G GKt a ++  l++i+ +k   + i+  Ptr +a
  MMETSP1137-20121227|9066_1 131 RAKNGTGKTAAFVIPVLERIEPNKnCIQAIILVPTRELA 169
                 566799999999988888887555156889999999765 PP

  == domain 2    score: 30.6 bits;  conditional E-value: 8.5e-11
   TIGR01587 115 eaeitlasian.SvliiDEvhayeeytkalllallevlkdvdvkillmsAtlp...kllkeylekielveenealdlkeekrfenqrisliekdkleeisslerllealkkekkvliivNtVdrAqelyqklkekapeeeiiLlHsrftekdrekkEaellkelkknekfvivaTQviEvslDi.svdvlitelap..idsLiQRlGRlaRyg 320
                  a++  a++++  v+ +DE++ + +   + l+  l  l   + ++ll sAt+p   k +k  + k  + ++   ++l   k  +++   +   +  ++++ l+ l +   + ++ +i++N+V+r   l +k+ e +       +H+++ + +r++      +++++ + + +v   +   ++Di sv+v+i    p  ++    R+GR  R+g
  MMETSP1137-20121227|9066_1 220 MAQKGVANLSQcGVICLDEADKLLSPEFMPLVEQLIDLMPQERQVLLFSATFPvkvKAFKDRVMKRPYEINLM-EELT-LKGVSQYYAFV---EERQKVHCLNTLFA-KLAINQSIIFCNSVNRVELLAKKVTELGFS--CFYIHAKMLQAHRNRV----FHDFRNGACRNLVSSDLFTRGIDIpSVNVVINFDFPksAETYLHRIGRSGRFG 420
                 55555666655147889***988877777766666677778889*********66655555555544443332.2222.23454555434...44455667774444.45678889*******************997..99***********776....89999999999999999999999988999998766622556778999988876 PP

>> TIGR00631  uvrb: excinuclease ABC subunit B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0      0.14        64     282     327 ..     281     324 ..     258     340 .. 0.76
   2 !   24.5   0.0   3.4e-09   1.5e-06     456     542 ..     338     419 ..     322     437 .. 0.86

  Alignments for each domain:
  == domain 1    score: -0.7 bits;  conditional E-value: 0.14
   TIGR00631 282 rlkqrteyDlemlkelGyckGienysrhlegrkagepPatlldylp 327
                 r+ +   y+++ ++el   kG+  y  ++e+r++ +  +tl+  l 
  MMETSP1137-20121227|9066_1 281 RVMK-RPYEINLMEELT-LKGVSQYYAFVEERQKVHCLNTLFAKLA 324
                 4433.369999999995.69************99999999987664 PP

  == domain 2    score: 24.5 bits;  conditional E-value: 3.4e-09
   TIGR00631 456 aedltdylkelgikvkylhseidtlerveiirdLrkgefdvlvGinLLreGlDlPevslvailDadkeGflrsersLiqtiGraarn 542
                  e l++ ++elg    y+h ++   +r ++ +d+r+g +  lv  +L+  G+D+P v +v  +D     f +s ++ +  iGr+ r 
  MMETSP1137-20121227|9066_1 338 VELLAKKVTELGFSCFYIHAKMLQAHRNRVFHDFRNGACRNLVSSDLFTRGIDIPSVNVVINFD-----FPKSAETYLHRIGRSGRF 419
                 577889999***************************************************9998.....788888888888888875 PP

>> TIGR00580  mfd: transcription-repair coupling factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0       0.8   3.7e+02     497     514 ..     155     172 ..     135     188 .. 0.66
   2 !   22.3   0.0   1.7e-08   7.6e-06     665     762 ..     332     426 ..     306     441 .. 0.85

  Alignments for each domain:
  == domain 1    score: -3.1 bits;  conditional E-value: 0.8
   TIGR00580 497 dgkQvavlvPTTlLaeQH 514
                 +  Q ++lvPT  La Q 
  MMETSP1137-20121227|9066_1 155 NCIQAIILVPTRELALQT 172
                 3379999***99999885 PP

  == domain 2    score: 22.3 bits;  conditional E-value: 1.7e-08
   TIGR00580 665 hnriesieklkeqlrelvPeariaiaHgqmeeeeleevmleFlkkefdvLvcTtiiEsGidipnaNTiiierAdkfGlaqLyQLrGRvGRskkkayay 762
                  n ++ +e l++++ el    +  ++H++m + + ++v+++F +++   Lv+  +   Gidip++N +i  +  k   + L+ + GR GR  + + a 
  MMETSP1137-20121227|9066_1 332 CNSVNRVELLAKKVTEL--GFSCFYIHAKMLQAHRNRVFHDFRNGACRNLVSSDLFTRGIDIPSVNVVINFDFPKSAETYLHRI-GRSGRFGHLGLAI 426
                 67788888888888888..578899*******************************************9988888888888876.7888877766665 PP

>> TIGR04095  dnd_restrict_1: DNA phosphorothioation system restriction enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.3   0.0   0.00047      0.21      22      81 ..     122     183 ..     110     258 .. 0.63
   2 !    8.3   0.0   0.00047      0.21     310     361 ..     346     397 ..     306     418 .. 0.76

  Alignments for each domain:
  == domain 1    score: 8.3 bits;  conditional E-value: 0.00047
   TIGR04095  22 knngrGilkma.tGtGktltaLalvskl.aekikslvvvvvvPykhLveqWakeaekFglep 81 
                 +  gr il+ a  GtGkt   ++ v +  + +++ +  +++vP ++L+ q ++ ++  g + 
  MMETSP1137-20121227|9066_1 122 ALAGRDILARAkNGTGKTAAFVIPVLERiEPNKNCIQAIILVPTRELALQTSQVCRDLGKHL 183
                 4568999987746*****988776666526666778899*********99998888777554 PP

  == domain 2    score: 8.3 bits;  conditional E-value: 0.00047
   TIGR04095 310 eelglrvktftaeeskeeReellkqfesgelqalvairCLDeGvDvPairta 361
                 +elg+++    a+  +++R+++ ++f +g+   lv+      G+D+P+++  
  MMETSP1137-20121227|9066_1 346 TELGFSCFYIHAKMLQAHRNRVFHDFRNGACRNLVSSDLFTRGIDIPSVNVV 397
                 56888888888899999*******************************9765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (451 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       127  (0.0309605); expected 82.0 (0.02)
Passed bias filter:                      111  (0.02706); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         9  (0.00219405); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.52u 0.18s 00:00:00.70 Elapsed: 00:00:00.89
# Mc/sec: 668.84
//
Query:       MMETSP1137-20121227|9068_1  [L=275]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (275 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        88  (0.0214529); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.16s 00:00:00.36 Elapsed: 00:00:00.41
# Mc/sec: 885.29
//
Query:       MMETSP1137-20121227|9069_1  [L=188]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (188 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        96  (0.0234032); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.13s 00:00:00.33 Elapsed: 00:00:00.32
# Mc/sec: 775.44
//
Query:       MMETSP1137-20121227|9070_1  [L=42]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (42 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        50  (0.0121892); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.13s 00:00:00.23 Elapsed: 00:00:00.31
# Mc/sec: 178.82
//
Query:       MMETSP1137-20121227|9071_1  [L=207]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (207 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        66  (0.0160897); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.15s 00:00:00.35 Elapsed: 00:00:00.36
# Mc/sec: 758.94
//
Query:       MMETSP1137-20121227|9072_1  [L=522]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (522 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       161  (0.0392491); expected 82.0 (0.02)
Passed bias filter:                      104  (0.0253535); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.16s 00:00:00.54 Elapsed: 00:00:00.68
# Mc/sec: 1013.21
//
Query:       MMETSP1137-20121227|9073_1  [L=147]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (147 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        57  (0.0138957); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.13s 00:00:00.29 Elapsed: 00:00:00.27
# Mc/sec: 718.61
//
Query:       MMETSP1137-20121227|9074_1  [L=59]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (59 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        25  (0.00609459); expected 82.0 (0.02)
Passed bias filter:                       25  (0.00609459); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.15s 00:00:00.28 Elapsed: 00:00:00.24
# Mc/sec: 324.47
//
Query:       MMETSP1137-20121227|9075_1  [L=117]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (117 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        87  (0.0212092); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.13s 00:00:00.28 Elapsed: 00:00:00.82
# Mc/sec: 188.33
//
Query:       MMETSP1137-20121227|9076_1  [L=71]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (71 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        38  (0.00926377); expected 82.0 (0.02)
Passed bias filter:                       31  (0.00755729); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:00.42
# Mc/sec: 223.12
//
Query:       MMETSP1137-20121227|9077_1  [L=393]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.2e-07   26.6   0.0      1e-06   26.0   0.0    1.2  1  TIGR01934 MenG_MenH_UbiE: ubiquinone/menaquinone biosynthesis methyltransferase
    4.7e-06   24.1   0.0    7.2e-06   23.5   0.0    1.3  1  TIGR02752 MenG_heptapren: 2-heptaprenyl-1,4-naphthoquinone methyltransferase
     0.0061   13.7   0.0      0.011   12.9   0.0    1.3  1  TIGR01983 UbiG: 3-demethylubiquinone-9 3-O-methyltransferase
  ------ inclusion threshold ------
      0.024   12.2   0.0       0.04   11.5   0.0    1.3  1  TIGR02072 BioC: biotin biosynthesis protein BioC


Domain annotation for each model (and alignments):
>> TIGR01934  MenG_MenH_UbiE: ubiquinone/menaquinone biosynthesis methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.0   0.0     1e-09     1e-06      96     142 ..     273     319 ..     212     333 .. 0.89

  Alignments for each domain:
  == domain 1    score: 26.0 bits;  conditional E-value: 1e-09
   TIGR01934  96 daeeLpfednsfdavtiafGlRNvtdiekaLkelaRVlkpggrlvil 142
                 +  +Lp++d+sfdavt++  +  +t+   +++e+ RVl+pgg ++il
  MMETSP1137-20121227|9077_1 273 KQPALPYADSSFDAVTCTVSIDYLTRPLDVIREVSRVLRPGGSVAIL 319
                 4568*****************************************98 PP

>> TIGR02752  MenG_heptapren: 2-heptaprenyl-1,4-naphthoquinone methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.5   0.0     7e-09   7.2e-06     106     150 ..     275     319 ..     213     327 .. 0.82

  Alignments for each domain:
  == domain 1    score: 23.5 bits;  conditional E-value: 7e-09
   TIGR02752 106 melpyednsfdyvtigfglrnvpdylqvlkemarvvkpggkvvcl 150
                  +lpy+d sfd vt    +  +   l+v++e+ rv++pgg v+ l
  MMETSP1137-20121227|9077_1 275 PALPYADSSFDAVTCTVSIDYLTRPLDVIREVSRVLRPGGSVAIL 319
                 479**************************************9876 PP

>> TIGR01983  UbiG: 3-demethylubiquinone-9 3-O-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.9   0.0     1e-05     0.011     114     169 ..     281     336 ..     256     345 .. 0.87

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 1e-05
   TIGR01983 114 kesfDvvlamEvlEHvadleeilkecaellkpggilflstinrtlksyllaivlaE 169
                 ++sfD+v++   ++  + + ++++e++++l+pgg++ +    r + s ++a++++ 
  MMETSP1137-20121227|9077_1 281 DSSFDAVTCTVSIDYLTRPLDVIREVSRVLRPGGSVAILFSDRLFFSKAVALWTGK 336
                 578*********************************99999999999999988775 PP

>> TIGR02072  BioC: biotin biosynthesis protein BioC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   3.9e-05      0.04      90     131 ..     276     317 ..     252     323 .. 0.89

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 3.9e-05
   TIGR02072  90 klplekksfDlivSnlalQWlddlsevlaelarvlkpgGlla 131
                  lp +++sfD +++ +++  l  +  v++e+ rvl+pgG +a
  MMETSP1137-20121227|9077_1 276 ALPYADSSFDAVTCTVSIDYLTRPLDVIREVSRVLRPGGSVA 317
                 57899**********************************886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (393 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        73  (0.0177962); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.30u 0.17s 00:00:00.47 Elapsed: 00:00:00.48
# Mc/sec: 1080.66
//
Query:       MMETSP1137-20121227|9078_1  [L=600]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
          0 1075.7   0.0          0 1075.5   0.0    1.0  1  TIGR01042 V-ATPase_V1_A: V-type ATPase, A subunit
   1.6e-233  774.2   0.0     2e-233  773.9   0.0    1.0  1  TIGR01043 ATP_syn_A_arch: ATP synthase archaeal, A subunit
    1.9e-48  163.0   0.0    1.9e-37  126.8   0.0    2.1  2  TIGR02546 III_secr_ATP: type III secretion apparatus H+-transporting two-sector ATPase
    1.5e-45  153.4   0.0    4.8e-37  125.4   0.0    2.1  2  TIGR03498 FliI_clade3: flagellar protein export ATPase FliI
    1.7e-45  153.4   0.0    1.5e-34  117.3   0.0    2.1  2  TIGR01026 fliI_yscN: ATPase FliI/YscN family
    2.4e-44  149.8   0.0    7.1e-35  118.5   0.0    2.1  2  TIGR03497 FliI_clade2: flagellar protein export ATPase FliI
    6.1e-44  148.3   0.0    2.5e-35  119.9   0.0    2.1  2  TIGR03496 FliI_clade1: flagellar protein export ATPase FliI
      5e-39  132.2   0.0    1.4e-35  120.8   0.0    2.2  2  TIGR01039 atpD: ATP synthase F1, beta subunit
    2.2e-33  113.3   0.2    1.4e-22   77.7   0.0    2.1  2  TIGR01040 V-ATPase_V1_B: V-type ATPase, B subunit
    1.1e-32  111.2   0.0    1.3e-26   91.1   0.0    2.1  2  TIGR03305 alt_F1F0_F1_bet: alternate F1F0 ATPase, F1 subunit beta
    2.4e-32  109.8   0.2    1.3e-22   77.7   0.0    2.1  2  TIGR01041 ATP_syn_B_arch: ATP synthase archaeal, B subunit
    9.3e-21   71.9   0.1    6.2e-14   49.4   0.0    2.1  2  TIGR00962 atpA: ATP synthase F1, alpha subunit
    1.7e-17   61.2   0.2    7.2e-11   39.3   0.0    2.1  2  TIGR03324 alt_F1F0_F1_al: alternate F1F0 ATPase, F1 subunit alpha


Domain annotation for each model (and alignments):
>> TIGR01042  V-ATPase_V1_A: V-type ATPase, A subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ! 1075.5   0.0         0         0       2     590 ..       4     591 ..       3     592 .. 0.99

  Alignments for each domain:
  == domain 1    score: 1075.5 bits;  conditional E-value: 0
   TIGR01042   2 ygsvkkvsgpvvvaeemagaamyelvrvgheelvgeiirlegdkatiqvyeetagltvgdpvlrtgkplsvelgpgilgnifdgiqrplkaiaeksqsiyiprgvnvealdrekkwefkpkklrvgdhitggdiygvveensllkhkillpprakgtityiapageytveekvlevefdgkkkkysmlqvwpvrsprpvaeklaadtplltgqrvldalfpsvqggttaipgafgcgktvisqslskysnsdvivyvgcgergnemaevlrdfpeltveldgreesimkrttlvantsnmpvaareasiytgitlaeyfrdmgynvsmladstsrwaealreisgrlaempadsgypaylgarlasfyeragrvkclgsperegsvsivgavsppggdfsdpvtsatlgivqvfwgldkklaqrkhfpsvnwlisyskylkaleefyekeypefvelrtkvkeilqeeeeleeivqlvgkdalaesdkitlevaklikedflqqngytkydkfcplyktvkmlrnliafydlakkavektaqddnkitysiikeklgdllyklsslkfedpadgeekikaeyeelaedl 590
                 +g v++vsgpvv+a++m+gaamyelvrvgh++lvgeiirle+dkatiqvyeet+gltvgdpv+ tg+pls++lgpg++g i+dgiqrpl++iae +qsiyiprgv+++al++++ w f p +++vgd itggdiyg v en ++ hk++l+p a+gti+yiap+g+yt+++++l+ ++dgk++ ++m + wpvrsprpv+ekla+d+plltgqr++dalfpsv ggt+a+pgafgcgktvisq+lskysnsd i+yvgcgergnemaevl+dfpelt+ ++g ee+imkrttlvantsnmpvaareasiytgitlaey+rdmg+nv+m+adstsrwaealreisgrlaempadsgypaylgarlasfyer+g+ + lgsp+r+gs+sivgavsppggdfsdpv satlgivqvfwgldkklaqrkhfpsvnwlisyskyl+al+++y+ +yp+f ++rt vkeilq e++l+eivqlvgkd+laesdk++levak+i++d+l+qng++++dk cp+yk+v+m++n++ fy+ a ka+e++++ dnk+t++ +k+++gd +ykl+++kf+ p+dg+e+++a++++l+e++
  MMETSP1137-20121227|9078_1   4 VGGVYSVSGPVVIADKMSGAAMYELVRVGHTKLVGEIIRLEEDKATIQVYEETSGLTVGDPVVCTGQPLSLQLGPGVMGRIYDGIQRPLEKIAELTQSIYIPRGVSTTALNNDISWSFIPLNFKVGDAITGGDIYGEVPENNIITHKLMLKPGAMGTISYIAPKGSYTIDDVILKTKLDGKETGHTMQHFWPVRSPRPVSEKLAGDMPLLTGQRIIDALFPSVLGGTCAVPGAFGCGKTVISQALSKYSNSDCIIYVGCGERGNEMAEVLKDFPELTMVVNGIEETIMKRTTLVANTSNMPVAAREASIYTGITLAEYMRDMGMNVAMMADSTSRWAEALREISGRLAEMPADSGYPAYLGARLASFYERSGKSEMLGSPSRTGSISIVGAVSPPGGDFSDPVCSATLGIVQVFWGLDKKLAQRKHFPSVNWLISYSKYLNALNPWYDANYPDFPPMRTTVKEILQMEDDLTEIVQLVGKDSLAESDKLILEVAKIIRDDYLAQNGFSEHDKTCPFYKSVWMMKNIVDFYKCAVKAIENSTA-DNKVTWNRLKASMGDTIYKLTAQKFQLPSDGKEALVANFTALNEEI 591
                 689********************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************988.8*****************************************9986 PP

>> TIGR01043  ATP_syn_A_arch: ATP synthase archaeal, A subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  773.9   0.0  6.2e-236    2e-233       3     557 ..       5     562 ..       3     585 .. 0.97

  Alignments for each domain:
  == domain 1    score: 773.9 bits;  conditional E-value: 6.2e-236
   TIGR01043   3 GeivrvsGplvvaeglkgakmyevvkvgeekliGeiiriegdkaviqvyeetsGikpgepvestGaplsvelGpGllesiydGvqrpldvlkeksg.afierGvdapaldrdkkwefkpk.vkkGdkvegGdiiGvveetsliehkilvppevegelkeiaeeGdytvedtiavvekdGeeeelkllqkwpvrkkrpvkeklepeeplvtGqrildtlfpiakGGtaaipGpfGsGktvtqqslakwsdaeivvyiGcGerGnemtevleefpeledpktG..kpllertvliantsnmpvaareasiytGitiaeyfrdmGydvalvadstsrwaealreisgrleempgeeGypaylasrlaefyeraGrvktlgseeregsvtvvgavsppGGdfsepvtqntlrivkvfwaldaklaerrhfpainwlqsyslyvdsvedwfaenvdeewrelrdealellqkeaelqeivrlvGsdalpekeklvlevarlireaflkqnafdevdtysspekqvkilkvilkfeeealealekGvpveeilklevkeelarvk 557
                 G +++vsGp+v+a+ ++ga mye+v+vg++kl+Geiir+e+dka+iqvyeetsG+  g+pv+ tG+pls++lGpG++++iydG+qrpl++++e ++  +i rGv+  al++d  w+f p   k Gd ++gGdi G+v+e ++i+hk+++ p   g+++ ia +G+yt++d+i + + dG+e+  ++++ wpvr +rpv ekl  ++pl+tGqri+d+lfp   GGt+a+pG+fG Gktv  q l+k+s+++ ++y+GcGerGnem+evl++fpel     G  + +++rt+l+antsnmpvaareasiytGit+aey rdmG +va++adstsrwaealreisgrl emp++ Gypayl +rla fyer+G+ + lgs++r+gs+++vgavsppGGdfs+pv + tl iv+vfw ld kla+r+hfp++nwl sys y ++++ w+  n  +++  +r ++ e+lq e++l eiv+lvG+d+l+e++kl+leva++ir+++l qn f e d+ +++ k v ++k i++f++ a++a+e+  + ++++  ++k ++  + 
  MMETSP1137-20121227|9078_1   5 GGVYSVSGPVVIADKMSGAAMYELVRVGHTKLVGEIIRLEEDKATIQVYEETSGLTVGDPVVCTGQPLSLQLGPGVMGRIYDGIQRPLEKIAELTQsIYIPRGVSTTALNNDISWSFIPLnFKVGDAITGGDIYGEVPENNIITHKLMLKPGAMGTISYIAPKGSYTIDDVILKTKLDGKETGHTMQHFWPVRSPRPVSEKLAGDMPLLTGQRIIDALFPSVLGGTCAVPGAFGCGKTVISQALSKYSNSDCIIYVGCGERGNEMAEVLKDFPELTMVVNGieETIMKRTTLVANTSNMPVAAREASIYTGITLAEYMRDMGMNVAMMADSTSRWAEALREISGRLAEMPADSGYPAYLGARLASFYERSGKSEMLGSPSRTGSISIVGAVSPPGGDFSDPVCSATLGIVQVFWGLDKKLAQRKHFPSVNWLISYSKYLNALNPWYDANY-PDFPPMRTTVKEILQMEDDLTEIVQLVGKDSLAESDKLILEVAKIIRDDYLAQNGFSEHDKTCPFYKSVWMMKNIVDFYKCAVKAIENSTADNKVTWNRLKASMGDTI 562
                 889********************************************************************************************988*********************769***********************************************************************************************************************************************************99985568*****************************************************************************************************************************************************************9995.99***************************************************************************************9999998877776665544 PP

>> TIGR02546  III_secr_ATP: type III secretion apparatus H+-transporting two-sector ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.2   0.0   7.9e-12   2.5e-09       5     106 ..       3     101 ..       1     116 [. 0.89
   2 !  126.8   0.0   5.9e-40   1.9e-37     110     349 ..     193     447 ..     175     525 .. 0.84

  Alignments for each domain:
  == domain 1    score: 34.2 bits;  conditional E-value: 7.9e-12
   TIGR02546   5 vlgrvtevsgtllka.vlpearvgelclikekekeseleaevvgfeedealLsplgelsglslgseviplgrplsikvgeelLGrvldglGrpldgkkelkak 106
                 ++g v +vsg ++ a ++ +a++ el+++     +++l  e++ +eed+a ++  +e+sgl+ g  v+ +g+pls+++g  ++Gr+ dg+ rpl++  el ++
  MMETSP1137-20121227|9078_1   3 RVGGVYSVSGPVVIAdKMSGAAMYELVRVG----HTKLVGEIIRLEEDKATIQVYEETSGLTVGDPVVCTGQPLSLQLGPGVMGRIYDGIQRPLEKIAELTQS 101
                 678899999987666267899******999....699**********************************************************98887665 PP

  == domain 2    score: 126.8 bits;  conditional E-value: 5.9e-40
   TIGR02546 110 krpldaepPdplsRqkieqplalGvraiDglltvgeGqRiGifaeaGvGkstLlsmiargakadvivlaLiGeRGRevrefiek....el.....geekrkrsvlvvstsdrsslerlkaayvataiaeyfRdqgkkvllllDsltRfaralreigLaaGepparrgyppsvfsslprlleRaGase.......kGsitalYtvLvegddmndpiadevrsilDGhivLsrklaernhyPaiDvlaslsRvlkkvv 349
                  +p++++  +  ++ + + pl +G r+iD+l     G    + ++ G+Gk+ + +++ + +++d i+ +  GeRG e+ e +++    ++     +e  +kr+ lv++ts+ +   r  + y+++++aey Rd g +v ++ Ds +R+a alrei+    e pa  gyp+ + ++l+ + eR+G+se       +Gsi  + +v   g d +dp+   + +i+     L +kla+r+h+P+++ l s s+ l+++ 
  MMETSP1137-20121227|9078_1 193 FWPVRSPR-PVSEKLAGDMPLLTGQRIIDALFPSVLGGTCAVPGAFGCGKTVISQALSKYSNSDCIIYVGCGERGNEMAEVLKDfpelTMvvngiEETIMKRTTLVANTSNMPVAAREASIYTGITLAEYMRDMGMNVAMMADSTSRWAEALREISGRLAEMPADSGYPAYLGARLASFYERSGKSEmlgspsrTGSISIVGAVSPPGGDFSDPVCSATLGIVQVFWGLDKKLAQRKHFPSVNWLISYSKYLNALN 447
                 35554433.3445566799**********************************************************98866532211332222278889************************************************************************************98744444447*******************************************************999875 PP

>> TIGR03498  FliI_clade3: flagellar protein export ATPase FliI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.9   0.0   2.5e-09   7.9e-07      25     102 ..      25     102 ..       5     118 .. 0.85
   2 !  125.4   0.0   1.5e-39   4.8e-37      91     344 ..     180     446 ..     170     513 .. 0.82

  Alignments for each domain:
  == domain 1    score: 25.9 bits;  conditional E-value: 2.5e-09
   TIGR03498  25 lveieaeegkkvlaevvgleedevllmpfeslegvelgaavvveeealevrpeeswlGRvidalgepiDgkgalaege 102
                 + e+ + +++k+++e+++leed+++++ +e+++g  +g+ vv + ++l++++ +  +GR+ d + +p++   +l+++ 
  MMETSP1137-20121227|9078_1  25 MYELVRVGHTKLVGEIIRLEEDKATIQVYEETSGLTVGDPVVCTGQPLSLQLGPGVMGRIYDGIQRPLEKIAELTQSI 102
                 455556666889*********************************************************999998875 PP

  == domain 2    score: 125.4 bits;  conditional E-value: 1.5e-39
   TIGR03498  91 piDgkgalaegeaavpvkaeppaalsRkrveeklktGvrvidlfltlcrGqRlGifaGsGvGkstllsmlaraaaaDvvvialvGeRGRevrefled....dlg.....eeglkrsvvvvatsDesplmRrkaayvalaiaeyfRdqgkdvllllDsvtRfakaqReialaageppvarGYtpsvfselPrLLeRaGpG.....aegkGsitglftvLvdgDdhnePvaDavrgilDGhivldRaiaergryPainvlksvsRlakkv 344
                  +Dgk++ ++ ++  pv+ +p +  ++   + +l tG r+id++ +  +G    +    G Gk+++   l++ ++ D ++    GeRG e+ e+l+d    ++      e  +kr+ +v  ts+ ++ +R+ + y+ +++aey+Rd g +v ++ Ds  R+a+a Rei+    e p+  GY++   + l    eR+G        + +Gsi+ + +v   g d+ +Pv  a+ gi+     ld+++a+r ++P++n l s s+  +  
  MMETSP1137-20121227|9078_1 180 KLDGKETGHTMQHFWPVR-SPRPVSEKLAGDMPLLTGQRIIDALFPSVLGGTCAVPGAFGCGKTVISQALSKYSNSDCIIYVGCGERGNEMAEVLKDfpelTMVvngieETIMKRTTLVANTSNMPVAAREASIYTGITLAEYMRDMGMNVAMMADSTSRWAEALREISGRLAEMPADSGYPAYLGARLASFYERSGKSemlgsPSRTGSISIVGAVSPPGGDFSDPVCSATLGIVQVFWGLDKKLAQRKHFPSVNWLISYSKYLNAL 446
                 567777777777777777.44445556667889*********************************************************9998876554444411111556899999*******************************************************************************8522113357899999999**********************************************987754 PP

>> TIGR01026  fliI_yscN: ATPase FliI/YscN family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.1   0.0   8.6e-12   2.7e-09      22     122 ..       2      98 ..       1     122 [. 0.85
   2 !  117.3   0.0   4.8e-37   1.5e-34     146     421 ..     211     508 ..     179     530 .. 0.79

  Alignments for each domain:
  == domain 1    score: 34.1 bits;  conditional E-value: 8.6e-12
   TIGR01026  22 kvvGrvkkvkgllieakgp.qasvGevclierkgsekkevvaevvgfegekvllmpyeevegveagskvlaknealsvkvgegllGrvldalGkplDekgka 122
                 ++vG v +v g ++ a+ +  a++ e++++      ++++v+e++ +e++k ++  yee++g+++g+ v+ ++++ls+++g g++Gr+ d++ +pl++ ++ 
  MMETSP1137-20121227|9078_1   2 ARVGGVYSVSGPVVIADKMsGAAMYELVRVG-----HTKLVGEIIRLEEDKATIQVYEETSGLTVGDPVVCTGQPLSLQLGPGVMGRIYDGIQRPLEKIAEL 98 
                 5789999999977776654156777777777.....3469********************************************************987654 PP

  == domain 2    score: 117.3 bits;  conditional E-value: 4.8e-37
   TIGR01026 146 vlstGvrsidalltvgkGqrlGifaGsGvGkstLlGmiarateadvnvialiGerGrevkefie.........kdLgeeglkrsvvvvatsDespllrlkgayvataiaeyfrdqGkdvlllmDsvtrfakaqreigLaaGepPatkGytPsvfsllpklleraGasek.......GsitafytvLveGDDlnePiaDevrailDGhivLsralaerglyPaidvlasisrllkaivseekkka..vrkfre.llskykenedLiriGa.YkkGsdkelDkaikklekler..flkqd 421
                  l tG r idal++   G    +    G Gk ++   +++++++d ++    GerG e+ e ++         + + e  +kr+ +v+ ts+ +  +r  + y+++++aey rd G +v+++ Ds  r+a+a rei+  + e Pa  Gy+    + l+ + er+G+se+       Gsi  + +v   G D+++P++ ++ +i+     L+++la+r+++P+++ l s s+ l+a+ +    +      +r  +  +++ ++dL +i +   k s +e Dk i +++k++r  +l+q+
  MMETSP1137-20121227|9078_1 211 PLLTGQRIIDALFPSVLGGTCAVPGAFGCGKTVISQALSKYSNSDCIIYVGCGERGNEMAEVLKdfpeltmvvNGIEETIMKRTTLVANTSNMPVAAREASIYTGITLAEYMRDMGMNVAMMADSTSRWAEALREISGRLAEMPADSGYPAYLGARLASFYERSGKSEMlgspsrtGSISIVGAVSPPGGDFSDPVCSATLGIVQVFWGLDKKLAQRKHFPSVNWLISYSKYLNALNPWYDANYpdFPPMRTtVKEILQMEDDLTEIVQlVGKDSLAESDKLILEVAKIIRddYLAQN 508
                 589********************9999*******************************87654311112221145667779************************************************************************************6543322222399999999999***********************************************9987544433112223321333344444455443313455667777777777777543377775 PP

>> TIGR03497  FliI_clade2: flagellar protein export ATPase FliI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.3   0.0   2.8e-10   8.8e-08       1      97 [.       5      99 ..       5     121 .. 0.87
   2 !  118.5   0.0   2.3e-37   7.1e-35      90     347 ..     181     454 ..     175     530 .. 0.75

  Alignments for each domain:
  == domain 1    score: 29.3 bits;  conditional E-value: 2.8e-10
   TIGR03497  1 Gkvkkvvglvieakgp.kakiGelcsikkkeekkvlaevvgfkeekvlLmPleevegiapgslveatgkklavkvgkellGkvldglGepldekelvk 97
                G v +v+g v+ a+ +  a++ el+++   +++k++ e++ ++e+k+++  +ee++g++ g+ v+ tg++l+++ g  ++G++ dg+ +pl++ ++++
  MMETSP1137-20121227|9078_1  5 GGVYSVSGPVVIADKMsGAAMYELVRV---GHTKLVGEIIRLEEDKATIQVYEETSGLTVGDPVVCTGQPLSLQLGPGVMGRIYDGIQRPLEKIAELT 99
                567888888777766536788899988...7899*********************************************************9865554 PP

  == domain 2    score: 118.5 bits;  conditional E-value: 2.3e-37
   TIGR03497  90 ldekelvkkkeklpleaeppnplkrk.rikdvlevgvkaidglltvGkGqrvGifagsGvGkstllgmiarnakadinviaLvGerGrev....refiekdLgeeG.....lkksvvvvatsdqpallrlkaalvataiaeyfrdqGkkvllmmDsvtrfamaqrevglavgepPttkGytpsvfsllpklleraGkse.......kGsitglytvLvdgDdlnePiaDavrgilDGhivLsreLaeknhyPaidvlksvsrvmeeivseehkel 347
                 ld+ke+ ++ +++   ++p  p++ k     +l +g + id+l+    G    +  + G Gk+++   +++++++d  +    GerG e+    ++f e  +  +G     +k++ +v+ ts++p   r  + ++++++aey+rd G +v +m Ds  r a+a re++    e P+  Gy + + + l+ + er+Gkse       +Gsi  + +v   g d+ +P+  a  gi+     L+++La+++h+P+++ l s s+ ++++ +  + + 
  MMETSP1137-20121227|9078_1 181 LDGKETGHTMQHFWPVRSP-RPVSEKlAGDMPLLTGQRIIDALFPSVLGGTCAVPGAFGCGKTVISQALSKYSNSDCIIYVGCGERGNEMaevlKDFPELTMVVNGieetiMKRTTLVANTSNMPVAAREASIYTGITLAEYMRDMGMNVAMMADSTSRWAEALREISGRLAEMPADSGYPAYLGARLASFYERSGKSEmlgspsrTGSISIVGAVSPPGGDFSDPVCSATLGIVQVFWGLDKKLAQRKHFPSVNWLISYSKYLNALNPWYDANY 454
                 5555555555555444444.44444404456899*******************************************9999*******97222256656555555522222688899*******************************************************************************97633333336999999999999*********************************************99876544443 PP

>> TIGR03496  FliI_clade1: flagellar protein export ATPase FliI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.4   0.0     2e-09   6.2e-07      27      99 ..      29     101 ..       5     122 .. 0.83
   2 !  119.9   0.0     8e-38   2.5e-35      90     341 ..     181     446 ..     172     510 .. 0.86

  Alignments for each domain:
  == domain 1    score: 26.4 bits;  conditional E-value: 2e-09
   TIGR03496  27 eeeegesveaevvgfeeeklllmpleeveglalgakvvlleeekklpvgeellGrvidalgepldgkgaleae 99 
                  +   +++ +e++++ee+k+++  +ee++gl++g+ vv + +  +l++g  ++Gr+ d+  +pl++ ++l+++
  MMETSP1137-20121227|9078_1  29 VRVGHTKLVGEIIRLEEDKATIQVYEETSGLTVGDPVVCTGQPLSLQLGPGVMGRIYDGIQRPLEKIAELTQS 101
                 334567899********************************************************99988776 PP

  == domain 2    score: 119.9 bits;  conditional E-value: 8e-38
   TIGR03496  90 ldgkgaleaeeevsleaepinplkrerieevldvGvrainalltvgkGqrlglfagsGvGKsvLlgmlarateadvvvvaLiGERgREvkefie.........knLgeeglkrsvvvaatadespllrlraaalataiaeyfrdqgkdvLllmDSltRfAmAqReialaiGEppatkgYppsvfaklpkLvEraGng.....kegkGsitafytvLvegddqqdpiadaaraiLDGHivLsRelaeaghyPaidieaSiSRvmkkv 341
                 ldgk + ++ ++    ++p    ++ + + +l +G r i+al++   G   ++  + G GK+v+   l ++++ d+++    GERg E+ e ++         + ++e+ +kr+ +va t++ +   r  + ++ +++aey rd g +v ++ DS +R+A+A Rei+  + E pa  gYp+   a+l+++ Er+G++      +++Gsi+ + +v   g d +dp+  a+ +i+     L+++la++ h+P+++ + S S+ ++++
  MMETSP1137-20121227|9078_1 181 LDGKETGHTMQHFWPVRSPRPVSEKLAGDMPLLTGQRIIDALFPSVLGGTCAVPGAFGCGKTVISQALSKYSNSDCIIYVGCGERGNEMAEVLKdfpeltmvvNGIEETIMKRTTLVANTSNMPVAAREASIYTGITLAEYMRDMGMNVAMMADSTSRWAEALREISGRLAEMPADSGYPAYLGARLASFYERSGKSemlgsPSRTGSISIVGAVSPPGGDFSDPVCSATLGIVQVFWGLDKKLAQRKHFPSVNWLISYSKYLNAL 446
                 6666666666655555555555566667889***********************************************999*******987655111111111456788899999********************************************************************************98444334679******************************************************998865 PP

>> TIGR01039  atpD: ATP synthase F1, beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.1   0.0   0.00034      0.11      40     106 ..      36     101 ..       4     118 .. 0.77
   2 !  120.8   0.0   4.6e-38   1.4e-35      93     421 ..     177     523 ..     163     542 .. 0.84

  Alignments for each domain:
  == domain 1    score: 9.1 bits;  conditional E-value: 0.00034
   TIGR01039  40 lvlevaqhlGddlvraialdstdGlvrglevkdtgkpievpvGkevlGrilnvlGepidekgevkkk 106
                 lv e+  +l +d+      ++t Gl+ g  v+ tg+p+++ +G  v+Gri++ +  p+++  e+ ++
  MMETSP1137-20121227|9078_1  36 LVGEII-RLEEDKATIQVYEETSGLTVGDPVVCTGQPLSLQLGPGVMGRIYDGIQRPLEKIAELTQS 101
                 555554.45666666667899*********************************9999988877665 PP

  == domain 2    score: 120.8 bits;  conditional E-value: 4.6e-38
   TIGR01039  93 lGepidekgevkkkek.lsihrkapsfeeqstkveiletGikvidllapyakGGkiglfGGaGvGktvliqelinniakehsGlsvfaGvGertreGndlylelke.sgvld........kvalvyGqmneppGarlrvaltgltlaeyfrdeegqdvllfidnifrftqaGsevsallGrlpsavGyqptlatemGelqerits.......tkkgsitsvqavyvpaddltdpapattfahldattvlsrkiaelGiypavdpldstsrlldpev.vGeehy....evarevqeilqrykelqdiiailGldelseedklvverarkie.rflsqpffvaevftGspGkyv 421
                 l   +d k++ ++ ++ +++    p  e++  ++ +l tG ++id l p + GG  ++ G  G Gktv+ q l +   ++ s + +++G Ger  e  ++ +++ e + v++        +++lv    n p  ar    +tg+tlaey+rd+   +v ++ d   r+++a  e+s  l  +p+  Gy   l+  + ++ er          +++gsi+ v av  p  d++dp  ++t+  ++    l++k+a+   +p+v+ l s s++l++     +  y     + + v+eilq   +l +i+ ++G d l+e dkl++e a+ i+  +l+q+ f     t    k v
  MMETSP1137-20121227|9078_1 177 LKTKLDGKETGHTMQHfWPVRSPRPVSEKLAGDMPLL-TGQRIIDALFPSVLGGTCAVPGAFGCGKTVISQALSK---YSNSDCIIYVGCGERGNEMAEVLKDFPElTMVVNgieetimkRTTLVANTSNMPVAAREASIYTGITLAEYMRDMGM-NVAMMADSTSRWAEALREISGRLAEMPADSGYPAYLGARLASFYERSGKsemlgspSRTGSISIVGAVSPPGGDFSDPVCSATLGIVQVFWGLDKKLAQRKHFPSVNWLISYSKYLNALNpWYDANYpdfpPMRTTVKEILQMEDDLTEIVQLVGKDSLAESDKLILEVAKIIRdDYLAQNGFSEHDKTCPFYKSV 523
                 5567899988877666488888888888888777765.9******************************999976...46678899**********9999887765233444566666669*******************************976.9******************************************9996431222223689*******************************************************9987541233344222247899***********************************9973699999776665555555555 PP

>> TIGR01040  V-ATPase_V1_B: V-type ATPase, B subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.5   0.1   1.1e-11   3.5e-09       5     101 ..       7      99 ..       4     114 .. 0.90
   2 !   77.7   0.0   4.3e-25   1.4e-22     206     454 ..     287     543 ..     280     555 .. 0.86

  Alignments for each domain:
  == domain 1    score: 33.5 bits;  conditional E-value: 1.1e-11
   TIGR01040   5 vsgvngplvildevkfpkfaeivnlkladgtvrkgqvlevsgekavvqvfegtsgidakkttveftgdilrlpvsedmlgrvfngsgkpidkgpkvl 101
                 v +v+gp+vi d++  + + e+v++     t+  g+++ ++++ka +qv+e tsg+ +   +   tg+ l l +   ++gr+++g  +p++k  ++ 
  MMETSP1137-20121227|9078_1   7 VYSVSGPVVIADKMSGAAMYELVRVG---HTKLVGEIIRLEEDKATIQVYEETSGLTVGDPV-VCTGQPLSLQLGPGVMGRIYDGIQRPLEKIAELT 99 
                 789*******************9985...57889**********************998765.58************************99977765 PP

  == domain 2    score: 77.7 bits;  conditional E-value: 4.3e-25
   TIGR01040 206 engslervtlflnlandptieriitprlalttaeylayekekhvlviltdmssyadalrevsaareevpgrrgfpgymytdlatiyeragrve.....grngsitqipiltmpnddithpipdltgyitegqiyvdrqlhnrqiyppinvlpslsrlmksai.gegmtrkdhsdvsnqlyakyaigkdvaamkavvgeealssedllyleflekfekkfiaqgayesrt.ifesldlawellri..fpkellkripkk 454
                 e+  ++r+tl  n +n p   r  +    +t aey+  ++++ v ++    s +a+alre+s    e+p+  g+p y+ + la+ yer+g+ e      r gsi+ +  ++ p  d + p+   t  i +    +d++l +r+ +p +n l s s+ + +     +    d   +   +     + +d++ +  +vg+++l++ d+l le  + +  +++aq+ + + +      +  w +  i  f k  +k i+++
  MMETSP1137-20121227|9078_1 287 EETIMKRTTLVANTSNMPVAAREASIYTGITLAEYMR-DMGMNVAMMADSTSRWAEALREISGRLAEMPADSGYPAYLGARLASFYERSGKSEmlgspSRTGSISIVGAVSPPGGDFSDPVCSATLGIVQVFWGLDKKLAQRKHFPSVNWLISYSKYLNALNpWYDANYPDFPPMRTTVKEILQMEDDLTEIVQLVGKDSLAESDKLILEVAKIIRDDYLAQNGFSEHDkTCPFYKSVWMMKNIvdFYKCAVKAIENS 543
                 55689******************************95.899999999999999*************************************9875544469*************************999988888**********************997644135677889***************************************************988765413333444455544423445555666555 PP

>> TIGR03305  alt_F1F0_F1_bet: alternate F1F0 ATPase, F1 subunit beta
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.0   6.5e-07   0.00021       2      98 ..       6      99 ..       5     118 .. 0.81
   2 !   91.1   0.0   4.2e-29   1.3e-26      88     407 ..     178     515 ..     161     538 .. 0.83

  Alignments for each domain:
  == domain 1    score: 18.0 bits;  conditional E-value: 6.5e-07
   TIGR03305  2 kvvavrgsivdvrfeeelpalysvlkagrekevvvevlaqldakkvrgialtateglargmavkdsgaplkapvgkeilsrvfdvfgntidrreslk 98
                 v +v g +v +  +    a+y ++++g ++++v e++ +l+++k        t gl+ g++v  +g+pl   +g  +++r++d + +++++  +l+
  MMETSP1137-20121227|9078_1  6 GVYSVSGPVVIA-DKMSGAAMYELVRVG-HTKLVGEII-RLEEDKATIQVYEETSGLTVGDPVVCTGQPLSLQLGPGVMGRIYDGIQRPLEKIAELT 99
                577777877643.34556799*******.667777875.68888888888999*******************************9999998766554 PP

  == domain 2    score: 91.1 bits;  conditional E-value: 4.2e-29
   TIGR03305  88 gntidrreslkdvkwrsvhqappaltrrssksevfetgikaidvlvplerggkaglfggagvgktvlltelihnlvsqeegvslfcgigercregeelyremke.....ag....vldntvmvfgqmneppgarfrvglaaltmaeyfrddekkdvlllidnifrfiqagsevsgllgqlpsrlgyqptlgtelaeleeriat.......tedaaitsiqavyvpaddftdpaavhtfshlsaslvlsrkraseglypaidplkstsklatp.sivgerhyk....larevrrvlaqyeelkdiiamlgleelskedrrvvararrl.erfltqpfftteqf 407
                    +d +e+ + +++    ++p  ++++ +    + tg ++id l p   gg   + g  g gktv+   l +     ++   ++ g ger  e  e+ +++ e      g    ++++t +v    n p  ar    ++ +t+aey+rd    +v ++ d   r+ +a  e+sg l ++p+  gy   lg+ la++ er  +       +++++i  + av  p  df+dp    t+  +     l +k a    +p+++ l s sk ++  +   +  y     +   v+++l   ++l +i+ ++g + l++ d+ +++ a+ + + +l+q  f+ ++ 
  MMETSP1137-20121227|9078_1 178 KTKLDGKETGHTMQHFWPVRSPRPVSEKLAGDMPLLTGQRIIDALFPSVLGGTCAVPGAFGCGKTVISQALSKY---SNSDCIIYVGCGERGNEMAEVLKDFPEltmvvNGieetIMKRTTLVANTSNMPVAAREASIYTGITLAEYMRD-MGMNVAMMADSTSRWAEALREISGRLAEMPADSGYPAYLGARLASFYERSGKsemlgspSRTGSISIVGAVSPPGGDFSDPVCSATLGIVQVFWGLDKKLAQRKHFPSVNWLISYSKYLNAlNPWYDANYPdfppMRTTVKEILQMEDDLTEIVQLVGKDSLAESDKLILEVAKIIrDDYLAQNGFSEHDK 515
                 567899999999999999999*******999999********************************87776553...3445679**************99976521111331111455677899999**********************7.6789*******************************************99755111111256899999*************************************************98875233445555322336789******************************9999876356888877766555 PP

>> TIGR01041  ATP_syn_B_arch: ATP synthase archaeal, B subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.0   0.2   1.3e-10     4e-08       5      99 ..       7      97 ..       4     116 .. 0.91
   2 !   77.7   0.0   4.2e-25   1.3e-22     196     413 ..     287     508 ..     244     532 .. 0.87

  Alignments for each domain:
  == domain 1    score: 30.0 bits;  conditional E-value: 1.3e-10
   TIGR01041  5 iteikGplvlvekveevaydeiveielpdGekrrGqvldsseglvvvqvfegttgldkeatkvrflGetlklkvsedllGrilngsGepidgGpe 99
                + +++Gp+v+++k++++a  e+v++     +k  G+++  +e+ + +qv+e t+gl+     v+ +G+ l l++   ++Gri++g+ +p++   e
  MMETSP1137-20121227|9078_1  7 VYSVSGPVVIADKMSGAAMYELVRVGH---TKLVGEIIRLEEDKATIQVYEETSGLTVGDP-VVCTGQPLSLQLGPGVMGRIYDGIQRPLEKIAE 97
                5689*******************9965...5679***********************9998.99***********************99987555 PP

  == domain 2    score: 77.7 bits;  conditional E-value: 4.2e-25
   TIGR01041 196 ektGaleravvflnladdpaverivtprlaltvaeylafekdlhvlviltdltnycealreisaareevpGrrGypGylytdlatlyeraGrvk.....GkkGsitqipiltmpdddithpipdltGyiteGqivlsrelhrkGiyppinvlpslsrlmkdGiG.eGktredhkdvsdqlyaayaegrdlrdlvaivGeealserdrkylkfadefekkfvkqg 413
                 e+t  ++r++++ n ++ p   r  +  + +t+aey+  + ++ v ++    + ++ealreis    e+p   Gyp yl + la++yer+G+ +      ++Gsi+ +  ++ p+ d + p+   t  i +    l+++l ++  +p +n l s s+ ++           d   +   +        dl ++v +vG+++l+e d+  l+ a+   + +++q 
  MMETSP1137-20121227|9078_1 287 EET-IMKRTTLVANTSNMPVAAREASIYTGITLAEYMR-DMGMNVAMMADSTSRWAEALREISGRLAEMPADSGYPAYLGARLASFYERSGKSEmlgspSRTGSISIVGAVSPPGGDFSDPVCSATLGIVQVFWGLDKKLAQRKHFPSVNWLISYSKYLNALNPwYDANYPDFPPMRTTVKEILQMEDDLTEIVQLVGKDSLAESDKLILEVAKIIRDDYLAQN 508
                 333.6899****************************95.888888776666778*************************************96534333589****************************9999***********************998755414566789**********************************************999985 PP

>> TIGR00962  atpA: ATP synthase F1, alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   0.1   1.2e-07   3.9e-05      26     120 ..       3      98 ..       1     107 [. 0.91
   2 !   49.4   0.0     2e-16   6.2e-14     128     366 ..     196     441 ..     171     446 .. 0.78

  Alignments for each domain:
  == domain 1    score: 20.4 bits;  conditional E-value: 1.2e-07
   TIGR00962  26 evGtvvsvadGiakveGlenvlskeliefegg.vkgialnleedsvGvvilGdyseikeGsevkrtgevlevpvGdallGrvvnalGepidGkGdi 120
                  vG v+sv+  ++    ++ + ++el+ + +    g ++ leed+  + +  ++s +  G+ v +tg+ l+  +G +++Gr+ + + +p++   ++
  MMETSP1137-20121227|9078_1   3 RVGGVYSVSGPVVIADKMSGAAMYELVRVGHTkLVGEIIRLEEDKATIQVYEETSGLTVGDPVVCTGQPLSLQLGPGVMGRIYDGIQRPLEKIAEL 98 
                 699*************************976516799*************************************************9999876666 PP

  == domain 2    score: 49.4 bits;  conditional E-value: 2e-16
   TIGR00962 128 vekkaPgvierksvkePlqtGikaidaliPiGrGqreliiGdrqtGktavaidtiinqkdskkdvkcvyvaiGqkestvaqvvekle.........ekgaleytivvaasasdsaslqylaPyagvalaeyfrdkgkdaliiyddlskqavayrqlslllrrPPGreayPGdvfylhsrl...leraak...lsdekGaGsltalPiietqagdvsayiPtnvisitdGqiflesdlfnsGirPainvGlsvsr 366
                 v +  P v e+ + + Pl tG + idal+P   G    + G    Gkt ++    +++ +++ d   +yv  G +   +a+v++ +          e+  ++ t++va +++ + + +  + y+g++laey+rd g+++ ++ d  s+ a+a r++s  l   P    yP    yl +rl    er+ k   l     +Gs++ +  +    gd s  + +  + i      l+ +l ++   P++n  +s s+
  MMETSP1137-20121227|9078_1 196 VRSPRP-VSEKLAGDMPLLTGQRIIDALFPSVLGGTCAVPGAFGCGKTVIS--QALSKYSNS-D-CIIYVGCGERGNEMAEVLKDFPeltmvvngiEETIMKRTTLVANTSNMPVAAREASIYTGITLAEYMRDMGMNVAMMADSTSRWAEALREISGRLAEMPADSGYPA---YLGARLasfYERSGKsemLGSPSRTGSISIVGAVSPPGGDFSDPVCSATLGIVQVFWGLDKKLAQRKHFPSVNWLISYSK 441
                 444444.567777889********************************875..445544423.3.458*************9986541112222224667999*******************************************************************7...77777633368988722233445568999999999999999998888888887666668888888888888888888776 PP

>> TIGR03324  alt_F1F0_F1_al: alternate F1F0 ATPase, F1 subunit alpha
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   0.1   1.6e-07     5e-05      27     127 ..       3     104 ..       1     132 [. 0.90
   2 !   39.3   0.0   2.3e-13   7.2e-11     114     291 ..     180     364 ..     168     396 .. 0.81

  Alignments for each domain:
  == domain 1    score: 20.0 bits;  conditional E-value: 1.6e-07
   TIGR03324  27 evGtvesvskGiakvsGlpgvgveellkfp.GdllGiafnvdedevGvvllgeysklqaGdevertgrvldvpvGdellGrvvdplGrpldgkkelasskrl 127
                 +vG v svs  +   + + g+ + el+++    l+G  + ++ed+  + +++e s l+ Gd v  tg+ l + +G +++Gr+ d + rpl+   el++s  +
  MMETSP1137-20121227|9078_1   3 RVGGVYSVSGPVVIADKMSGAAMYELVRVGhTKLVGEIIRLEEDKATIQVYEETSGLTVGDPVVCTGQPLSLQLGPGVMGRIYDGIQRPLEKIAELTQSIYI 104
                 68999999999999999***********9725789********************************************************99988876554 PP

  == domain 2    score: 39.3 bits;  conditional E-value: 2.3e-13
   TIGR03324 114 pldgkkelasskrlpierpapeimdrapvtvplqtGlkvvdalipiGrGqrelilGdrqtGktaiaidtilnqkdknvlcvycaiGqrasavakvvaelr.........ekgaldytivvvtegndppGlqyiapyaatsiaeyfmeqGrdvlivyddltkharayrelslllrrppGreafpGdif 291
                  ldgk++ +++++    r   ++ ++ +  +pl tG +++dal p   G    + G    Gkt i+    l +  +    +y   G+r   +a+v++++          e+  ++ t+ v    n p   +  + y+  ++aey+ + G +v ++ d  ++ a a re+s  l   p    +p  + 
  MMETSP1137-20121227|9078_1 180 KLDGKETGHTMQHFWPVRSPRPVSEKLAGDMPLLTGQRIIDALFPSVLGGTCAVPGAFGCGKTVIS--QALSKYSNSDCIIYVGCGERGNEMAEVLKDFPeltmvvngiEETIMKRTTLVANTSNMPVAAREASIYTGITLAEYMRDMGMNVAMMADSTSRWAEALREISGRLAEMPADSGYPAYLG 364
                 688888877777665567777899***************************************986..3455555555569*************998765111111122456678888899999***************************************************999999997443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (600 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       169  (0.0411994); expected 82.0 (0.02)
Passed bias filter:                      149  (0.0363237); expected 82.0 (0.02)
Passed Vit filter:                        20  (0.00487567); expected 4.1 (0.001)
Passed Fwd filter:                        13  (0.00316919); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.65u 0.16s 00:00:00.81 Elapsed: 00:00:00.74
# Mc/sec: 1070.18
//
Query:       MMETSP1137-20121227|9079_1  [L=150]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (150 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       107  (0.0260848); expected 82.0 (0.02)
Passed bias filter:                      104  (0.0253535); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.14s 00:00:00.31 Elapsed: 00:00:00.54
# Mc/sec: 366.64
//
Query:       MMETSP1137-20121227|9080_1  [L=501]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.8e-21   73.0   0.0    3.9e-12   43.2   0.0    2.3  2  TIGR01642 U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor
    3.3e-20   70.6   0.0    2.9e-19   67.5   0.0    2.3  2  TIGR01628 PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family
    4.1e-20   70.5   0.1      1e-10   39.6   0.0    3.1  4  TIGR01659 sex-lethal: sex-lethal family splicing factor
    8.4e-20   69.4   0.0    2.2e-18   64.8   0.0    2.8  3  TIGR01661 ELAV_HUD_SF: ELAV/HuD family splicing factor
    5.6e-16   56.4   0.0    4.2e-15   53.5   0.0    2.0  1  TIGR01622 SF-CC1: splicing factor, CC1-like family
    2.3e-11   41.0   0.6    1.1e-10   38.7   0.0    2.4  2  TIGR01648 hnRNP-R-Q: hnRNP-R, Q splicing factor family
      3e-06   24.3   1.3     0.0028   14.5   0.0    2.7  3  TIGR01649 hnRNP-L_PTB: hnRNP-L/PTB/hephaestus splicing factor family
    5.1e-05   20.0   0.0    5.1e-05   20.0   0.0    3.1  3  TIGR01645 half-pint: poly-U binding splicing factor, half-pint family


Domain annotation for each model (and alignments):
>> TIGR01642  U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.2   0.0   7.6e-15   3.9e-12     298     380 ..       2      87 ..       1      93 [. 0.89
   2 !   28.6   0.0     2e-10   1.1e-07     289     374 ..      88     173 ..      82     188 .. 0.83

  Alignments for each domain:
  == domain 1    score: 43.2 bits;  conditional E-value: 7.6e-15
   TIGR01642 298 klyignLPldlkddqvkeLLesFGdLkaFnliKdlatGlsKGyaFceykdssvtdlAiaaLnGikl...gdkkLnvkrAtvgakqa 380
                 kl++g +P+ l++d v+e+ ++FGd+    +++d+  G  +G +F++y     ++ AiaaL   +      + L+v++A  g +  
  MMETSP1137-20121227|9080_1   2 KLFVGQIPKTLEEDGVREVFQEFGDIVEIVILRDRRSGIHQGCCFVKYSSVAAAQAAIAALHNQRSlppLRNPLQVRFAESGTNAG 87 
                 8************************************************************8766522257999999999888765 PP

  == domain 2    score: 28.6 bits;  conditional E-value: 2e-10
   TIGR01642 289 sktvldsedklyignLPldlkddqvkeLLesFGdLkaFnliKdlatGlsKGyaFceykdssvtdlAiaaLnGikl..gdkkLnvkrAt 374
                  ++ ++se+kl++g++P   +d+ ++ L   +G+++   ++   ++G  +G aF+ y  +    +Ai aL G+ +  g+  L v+ A 
  MMETSP1137-20121227|9080_1  88 ERGQSNSENKLFVGGVPSCCGDKELRSLFSTYGEVQDVYILAS-KEG-QRGCAFVRYAAPQSCSMAIDALHGKYMkaGELPLVVRYAD 173
                 578899*******************************998865.456.68**********************7551166667777775 PP

>> TIGR01628  PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.5   0.0   5.6e-22   2.9e-19     181     433 ..       3     266 ..       1     311 [. 0.70
   2 ?   -3.9   0.0       2.3   1.2e+03     329     356 ..     466     494 ..     464     496 .. 0.69

  Alignments for each domain:
  == domain 1    score: 67.5 bits;  conditional E-value: 5.6e-22
   TIGR01628 181 lYvKnlddsvtedklrelFakfGeitSaivkkde.knrkrgfafvnyekaedAkkAveelngkkitlaatgkilyVgraqkraeReaelkakfeelkqerkekaqgvNlYvkNlddtvddekLrelFeefGeitSakvmldekekSkgFGFVcfssqeeAnkAvtelhgkil..ngkPLyvalAqr.keqRkarLqqqf...............................mqasaesrqlsigspvigaan.........isgrhqaaqqqavvtqavkqqlasqplnfkinqmmls 433
                 l+v +++++++ed +re+F++fG+i+ +++ +d+ ++  +g +fv y +  +A+ A+ +l+++++      + l V  a + ++       ++ + +         + l+v  +     d++Lr lF+ +Ge++ + ++ ++ e  +g  FV ++ ++  + A+  lhgk +  ++ PL v +A+  k qR++  qq++                                                 +++         ++   qa++++  +  + +qq ++++l+ + +q+ + 
  MMETSP1137-20121227|9080_1   3 LFVGQIPKTLEEDGVREVFQEFGDIVEIVILRDRrSGIHQGCCFVKYSSVAAAQAAIAALHNQRSL-PPLRNPLQVRFAESGTNA-----GERGQSN-------SENKLFVGGVPSCCGDKELRSLFSTYGEVQDVYILASK-EGQRGCAFVRYAAPQSCSMAIDALHGKYMkaGELPLVVRYADPpKSQRNS--QQMYgangrfpwpggpalwppgppppgwpmpwglgG-----------------TMGmgpyppwvmPPNMSQANNAPYNYYSQYQQQQQQKQLQAQQQQQGVN 266
                 8999*************************99997257789********************999877.344555555444443332.....3333334.......4478******************************9988.5569**********************98833468*******853777776..466655666677776666655555554444443330.................3323333222213333344444444444444444444444443333332 PP

  == domain 2    score: -3.9 bits;  conditional E-value: 2.3
   TIGR01628 329 GFVcfssqeeAnkAvtelhg.kilngkPL 356
                 G V f s+  A +  + l+g  ++++k L
  MMETSP1137-20121227|9080_1 466 GIVNFDSPMSAVHGCSSLNGlPMVGEKSL 494
                 66777777777777777777667777766 PP

>> TIGR01659  sex-lethal: sex-lethal family splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.6   0.0     2e-13     1e-10     195     275 ..       2      83 ..       1      89 [. 0.90
   2 !   27.6   0.0   9.3e-10   4.7e-07     188     276 ..      90     176 ..      84     259 .. 0.85
   3 ?   -2.5   0.4       1.2   6.4e+02       6      37 ..     410     438 ..     395     447 .. 0.75
   4 ?   -3.8   0.0       3.2   1.7e+03     152     179 ..     466     494 ..     463     496 .. 0.76

  Alignments for each domain:
  == domain 1    score: 39.6 bits;  conditional E-value: 2e-13
   TIGR01659 195 nlyvtnlprtitddqldtifgkygsivqknilrdkltgkprgvafvrfnkreeaqeaisalnnvipe.ggsqpltvrlaeeh 275
                  l+v ++p+t+ +d +  +f  +g iv+  ilrd+ +g  +g  fv++     aq ai+al n        +pl vr+ae  
  MMETSP1137-20121227|9080_1   2 KLFVGQIPKTLEEDGVREVFQEFGDIVEIVILRDRRSGIHQGCCFVKYSSVAAAQAAIAALHNQRSLpPLRNPLQVRFAESG 83 
                 699**********************************************************99754314678*******975 PP

  == domain 2    score: 27.6 bits;  conditional E-value: 9.3e-10
   TIGR01659 188 gesikdtnlyvtnlprtitddqldtifgkygsivqknilrdkltgkprgvafvrfnkreeaqeaisalnnvipeggsqpltvrlaeehg 276
                 g+s  +  l+v  +p +  d++l ++f  yg++ +  il  k     rg afvr+   +    ai al     + g  pl vr a+   
  MMETSP1137-20121227|9080_1  90 GQSNSENKLFVGGVPSCCGDKELRSLFSTYGEVQDVYILASKEG--QRGCAFVRYAAPQSCSMAIDALHGKYMKAGELPLVVRYADPPK 176
                 67777889*************************99****99974..59************************************98644 PP

  == domain 3    score: -2.5 bits;  conditional E-value: 1.2
   TIGR01659   6 nnggyapygynnkssggrmfgmshslpsgmsr 37 
                  ngg  p g n+ s+   m    hs p g+s 
  MMETSP1137-20121227|9080_1 410 ANGGIGPAGLNGLSA---MANNGHSAPNGISA 438
                 578888888887664...55567788877764 PP

  == domain 4    score: -3.8 bits;  conditional E-value: 3.2
   TIGR01659 152 afvdfaseadsqraikslngit.vrnkrl 179
                 ++v+f s + +     slng+  v +k l
  MMETSP1137-20121227|9080_1 466 GIVNFDSPMSAVHGCSSLNGLPmVGEKSL 494
                 67999999999999999999842555555 PP

>> TIGR01661  ELAV_HUD_SF: ELAV/HuD family splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.8   0.0   4.3e-21   2.2e-18       6     179 ..       3     184 ..       1     188 [. 0.85
   2 ?   -3.9   0.1       3.2   1.6e+03     177     192 ..     250     265 ..     235     280 .. 0.51
   3 ?   -0.6   0.0      0.32   1.6e+02      50     342 ..     468     496 ..     464     499 .. 0.50

  Alignments for each domain:
  == domain 1    score: 64.8 bits;  conditional E-value: 4.3e-21
   TIGR01661   6 livnylPqtmtqeeirslftsiGeiescklvrdkvtGqslGyGfvnyvreedaekavnslnGlr...lqnktikvsyarPssd......sikganlyvsGlPktmtqkeleslfspfGkiitsrilsdnvtdlskGvGfirfdkreeadraikalnGttPsgatepitvkfannPs.ssnskal 179
                 l v  +P+t+ ++ +r +f  +G+i  + ++rd+  G   G  fv y     a+ a+++l   r        ++v +a   ++      s  +  l+v G+P     kel slfs +G++    il+ +  +  +G  f+r+   +    ai al G+  ++   p++v++a+ P  ++ns+++
  MMETSP1137-20121227|9080_1   3 LFVGQIPKTLEEDGVREVFQEFGDIVEIVILRDRRSGIHQGCCFVKYSSVAAAQAAIAALHNQRslpPLRNPLQVRFAESGTNagergqSNSENKLFVGGVPSCCGDKELRSLFSTYGEVQDVYILASK--EGQRGCAFVRYAAPQSCSMAIDALHGKYMKAGELPLVVRYADPPKsQRNSQQM 184
                 78899******************************************************988773332356799999987654111111344567*******************************876..5679**************************************99614566655 PP

  == domain 2    score: -3.9 bits;  conditional E-value: 3.2
   TIGR01661 177 kallsdleavlnaqlt 192
                 ++ + +l+a +++q +
  MMETSP1137-20121227|9080_1 250 QQQQKQLQAQQQQQGV 265
                 3333333333333333 PP

  == domain 3    score: -0.6 bits;  conditional E-value: 0.32
   TIGR01661  50 vnyvreedaekavnslnGlrlqnktikvsyarPssdsikganlyvsGlPktmtqkeleslfspfGkiitsrilsdnvtdlskGvGfirfdkreeadraikalnGttPsgatepitvkfannPsssnskallsdleavlnaqltrvprstiltaaaiaplhkaaakfrlsaldflavlakrlqqhavaqqaaaqrasplaadgavaglaagaqiaasdgagycifvynlspdtdeavlqlfgpfGavqsvkiirdlttnkckGygfvsmtnydeaalailslnGytl.gnrvlqv 342
                 vn+  +  a                                                                                                                                                                                                                                                                              slnG  + g++ lqv
  MMETSP1137-20121227|9080_1 468 VNFDSPMSAV-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------HGCSSLNGLPMvGEKSLQV 496
                 4444444444.........................................................................................................................................................................................................................................................................4445666654325566665 PP

>> TIGR01622  SF-CC1: splicing factor, CC1-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.5   0.0   8.2e-18   4.2e-15     122     288 ..       3     163 ..       1     185 [. 0.84

  Alignments for each domain:
  == domain 1    score: 53.5 bits;  conditional E-value: 8.2e-18
   TIGR01622 122 vfvlqlalklreRdlkEFFskvgkvrdvrlikDrnSrrSkGvaYvEFydvesvqlAlal.tGqkl...lgvPvivqaseAEKNraakaatelsgdipnsiadlkLYvGnlhfnitEqeLrqiFepFGeielvqlqkDpetGrskGyGFiqFsdaeeakeAleklNG.lelAG 288
                  fv q++  l+e  ++E F++ g + ++ +++Dr+S+  +G  +v +  v + q+A+a+   q+    l  P+ v+ +e   N   +          +s ++ kL+vG++ +   ++eLr +F  +Ge+++v +   +e+   +G  F+++   +    A+ +l G    AG
  MMETSP1137-20121227|9080_1   3 LFVGQIPKTLEEDGVREVFQEFGDIVEIVILRDRRSGIHQGCCFVKYSSVAAAQAAIAAlHNQRSlppLRNPLQVRFAESGTNAGER---------GQSNSENKLFVGGVPSCCGDKELRSLFSTYGEVQDVYILASKEG--QRGCAFVRYAAPQSCSMAIDALHGkYMKAG 163
                 5999*****************************************************852566642335688888888877776666.........2345679**********************************999..89********99999999999999633344 PP

>> TIGR01648  hnRNP-R-Q: hnRNP-R, Q splicing factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.7   0.0   2.2e-13   1.1e-10      60     221 ..       2     174 ..       1     184 [. 0.79
   2 ?   -2.5   0.4      0.66   3.4e+02     524     555 ..     239     270 ..     229     282 .. 0.55

  Alignments for each domain:
  == domain 1    score: 38.7 bits;  conditional E-value: 2.2e-13
   TIGR01648  60 evfvGkiPrdlyedelvPlfekvGkiyelrlmmd.ldGknrGyafvtfcnkeeakeavkelnnye....irp.........GrllGv.cisvdncrlfvGgiPktkkreeileelkkvteGvvdvivyasaadkkknrGfafveyeshraaamarrkllpGriklWGhviavdWaeP 221
                  +fvG+iP+ l ed +  +f++ G i e+ ++ d  +G  +G  fv ++   +a+ a+  l+n      +r+         G   G    s  +++lfvGg+P     +e+ + ++   e v dv + as   k+  rG afv y   ++ +ma   l    +k     + v +a+P
  MMETSP1137-20121227|9080_1   2 KLFVGQIPKTLEEDGVREVFQEFGDIVEIVILRDrRSGIHQGCCFVKYSSVAAAQAAIAALHNQRslppLRNplqvrfaesGTNAGErGQSNSENKLFVGGVPSCCGDKELRSLFSTYGE-VQDVYILAS---KEGQRGCAFVRYAAPQSCSMAIDALHGKYMKAGELPLVVRYADP 174
                 58********************************99***********************998864222344411111122244444324577889***********99999999987666.788877755...8889*****************88775555555555677888887 PP

  == domain 2    score: -2.5 bits;  conditional E-value: 0.66
   TIGR01648 524 kaydgyaaPdatarvataqqnkaaaavggdya 555
                 + y+ y++ + ++++ ++q +++ + v g y+
  MMETSP1137-20121227|9080_1 239 APYNYYSQYQQQQQQKQLQAQQQQQGVNGHYS 270
                 33444444444444444444445555555555 PP

>> TIGR01649  hnRNP-L_PTB: hnRNP-L/PTB/hephaestus splicing factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.8   0.0   0.00059       0.3     132     176 ..      17      65 ..      11      67 .. 0.83
   2 !   14.5   0.0   5.5e-06    0.0028     315     361 ..     111     160 ..      66     173 .. 0.82
   3 ?   -3.2   0.3       1.3   6.5e+02     270     292 ..     239     261 ..     217     302 .. 0.56

  Alignments for each domain:
  == domain 1    score: 7.8 bits;  conditional E-value: 0.00059
   TIGR01649 132 lyqifnrvGkVlrivifk..knnsvq..AlvefesvesAqkAKaaldga 176
                 + ++f+++G +  ivi++  + +  q   +v+++sv +Aq+A aal ++
  MMETSP1137-20121227|9080_1  17 VREVFQEFGDIVEIVILRdrRSGIHQgcCFVKYSSVAAAQAAIAALHNQ 65 
                 6689************96336677774468****************998 PP

  == domain 2    score: 14.5 bits;  conditional E-value: 5.5e-06
   TIGR01649 315 alFnlfgvYGdvervkilknkket...alvemadpqqaqlalthLdkvkl 361
                 +l  lf+ YG+v+ v il +k+++   a+v +a pq    a++ L ++ +
  MMETSP1137-20121227|9080_1 111 ELRSLFSTYGEVQDVYILASKEGQrgcAFVRYAAPQSCSMAIDALHGKYM 160
                 6778****************9753333****************9998766 PP

  == domain 3    score: -3.2 bits;  conditional E-value: 1.3
   TIGR01649 270 apsreslalasaalapaisstap 292
                 ap+ +  +++++++ ++++ +++
  MMETSP1137-20121227|9080_1 239 APYNYYSQYQQQQQQKQLQAQQQ 261
                 34444444443333333333222 PP

>> TIGR01645  half-pint: poly-U binding splicing factor, half-pint family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   0.0     1e-07   5.1e-05     205     262 ..       5      62 ..       1      65 [. 0.93
   2 !    6.3   0.0    0.0014      0.73     205     262 ..     100     155 ..      90     178 .. 0.79
   3 ?  -12.1   9.4         8   4.1e+03      85     101 ..     248     263 ..     243     266 .. 0.54

  Alignments for each domain:
  == domain 1    score: 20.0 bits;  conditional E-value: 1e-07
   TIGR01645 205 vasvhpdlseedlksvfeafGeivkcklaraptlrkhkGfGflefenlqsqseaiasm 262
                 v  + + l e+ ++ vf+ fG+iv+  + r+  ++ h+G  f+ +    + + aia++
  MMETSP1137-20121227|9080_1   5 VGQIPKTLEEDGVREVFQEFGDIVEIVILRDRRSGIHQGCCFVKYSSVAAAQAAIAAL 62 
                 677888999**********************************************986 PP

  == domain 2    score: 6.3 bits;  conditional E-value: 0.0014
   TIGR01645 205 vasvhpdlseedlksvfeafGeivkcklaraptlrkhkGfGflefenlqsqseaiasm 262
                 v  v     +++l+s+f ++Ge+++      ++ ++ +G  f+ ++  qs s ai ++
  MMETSP1137-20121227|9080_1 100 VGGVPSCCGDKELRSLFSTYGEVQDVY--ILASKEGQRGCAFVRYAAPQSCSMAIDAL 155
                 66777777899*************655..45688999*************99998765 PP

  == domain 3    score: -12.1 bits;  conditional E-value: 8
   TIGR01645  85 hqkqqlenqqrqvqrqq 101
                 +q+qq++++q q q+qq
  MMETSP1137-20121227|9080_1 248 QQQQQQKQLQAQ-QQQQ 263
                 344455555555.5554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (501 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       137  (0.0333983); expected 82.0 (0.02)
Passed bias filter:                      113  (0.0275475); expected 82.0 (0.02)
Passed Vit filter:                        19  (0.00463189); expected 4.1 (0.001)
Passed Fwd filter:                         8  (0.00195027); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.55u 0.18s 00:00:00.73 Elapsed: 00:00:00.71
# Mc/sec: 931.36
//
Query:       MMETSP1137-20121227|9081_1  [L=417]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (417 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        78  (0.0190151); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.17s 00:00:00.47 Elapsed: 00:00:00.30
# Mc/sec: 1834.65
//
Query:       MMETSP1137-20121227|9082_1  [L=402]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      3e-90  300.5   0.5    3.4e-90  300.4   0.3    1.0  1  TIGR00483 EF-1_alpha: translation elongation factor EF-1, subunit alpha
    5.3e-34  115.4   0.0    1.1e-33  114.3   0.0    1.5  1  TIGR00485 EF-Tu: translation elongation factor Tu
    1.2e-33  114.6   0.0    2.6e-33  113.5   0.0    1.5  1  TIGR02034 CysN: sulfate adenylyltransferase, large subunit
    2.6e-25   87.0   0.1    3.6e-12   43.6   0.0    2.3  2  TIGR00475 selB: selenocysteine-specific translation elongation factor
    1.4e-12   44.4   0.0    2.7e-12   43.5   0.0    1.4  1  TIGR01394 TypA_BipA: GTP-binding protein TypA/BipA
    2.5e-09   34.7   0.8      2e-07   28.4   0.0    2.8  3  TIGR03680 eif2g_arch: translation initiation factor 2, gamma subunit
    3.1e-08   30.2   0.0     0.0007   15.9   0.0    2.1  2  TIGR01393 lepA: GTP-binding protein LepA
    6.3e-05   19.1   0.0    8.8e-05   18.6   0.0    1.2  1  TIGR00484 EF-G: translation elongation factor G
    0.00082   15.7   0.0     0.0013   15.0   0.0    1.4  1  TIGR00503 prfC: peptide chain release factor 3
    0.00086   16.0   0.5     0.0038   13.8   0.1    2.0  2  TIGR00487 IF-2: translation initiation factor IF-2


Domain annotation for each model (and alignments):
>> TIGR00483  EF-1_alpha: translation elongation factor EF-1, subunit alpha
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  300.4   0.3   8.2e-93   3.4e-90      64     424 ..       2     400 ..       1     402 [] 0.90

  Alignments for each domain:
  == domain 1    score: 300.4 bits;  conditional E-value: 8.2e-93
   TIGR00483  64 keerergvtidvahkkfetdkyevtivdapghrdfiknmitgasqadaavlvvavddgele...........vqpqtrehvllartlgikqlivainkmdsvn...ydeekfeelkkevsellkkvgykpd....evefipvsaykgdnvvkksenapwyk............gktllealdkl.eapekpvdkplripiqdvysitgvgtvpvgrvetgvlkkgekvvfepag.....vsgevksiemhheqieqaepgdnigfnvrgvskkdirr.gdvagdadn.ppkvakeftaqivvlqhpgaitvgytpvldahtaqvacrfvellkkldprtgkvkeenpkflktgdaaivklkptkplviekvkeipklgrfairdmgqtvaagvvidvkk 424
                 keerergvti  + k f t+k++ ti+dapghrdfiknmi+ga+qad+a+l+v +d + +            vq     h+ l   lg+kqli+ +nkmd+     y++ +++e+  e+ ++l kvg+k d    +v+ +p+s++ gdn+ kksen+ w++             +tl + l+++  +p +    p+r+p+  +y+i gvg v  grve g++k+ e+vvf p+        g+v +iemhh + e a+pgdn+g+n++g+ k+++ r gdv   +++     + +f+aqi  l+ pg+i  gy+p+  +   + acr ve+  k+ + tg +k enp+ lk+ + a v ++p +plv++ +k+   l r+a  d + +v  g v  v++
  MMETSP1137-20121227|9082_1   2 KEERERGVTISCTTKEFFTEKWHYTIIDAPGHRDFIKNMISGAAQADVALLMVPADGNFTTaiqkgnhkageVQQAHVTHARLQNLLGVKQLIIGVNKMDTDTagpYSKARYDEVGGEMKNMLIKVGWKKDfvekSVPVLPLSGWMGDNLNKKSENMSWWEgvdvlvxkttmhINTLYDCLNDMcSPPGRNETSPMRLPVSGIYKIKGVGDVLAGRVEQGLVKPNEEVVFMPTNtpanpCGGKVFTIEMHHTRHEVAKPGDNVGLNIKGLDKQNMPRvGDVMIYKKDxSLDQCGQFSAQIQTLDIPGEIKLGYSPIGFVRCGRSACRAVEFKFKVGKETGGKKMENPHSLKSNEMAEVVFRPQQPLVVDSFKNCEGLSRIAFLDGNTAVMLGKVTTVVS 400
                 89*************************************************9977655333566677766656666678999999***************854344*********************997522227899**********************9*****999999899***9976627889999**************************************9876222224689******************************995559**9876664889***************************************************************************************************999988865 PP

>> TIGR00485  EF-Tu: translation elongation factor Tu
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  114.3   0.0   2.7e-36   1.1e-33      55     312 ..       3     304 ..       1     311 [. 0.78

  Alignments for each domain:
  == domain 1    score: 114.3 bits;  conditional E-value: 2.7e-36
   TIGR00485  55 eekargitintahveyetekrhyahvdcpghadyvknmitgaaqmdgailvvsaad.............gpmpqtr.ehillarqvgvpklvvflnkvdlvdde....ellelvelevrellse....ydfpgddvpivrgsal..kale..............gdaeweekilelmeavdeyiptperevdkpfllaiedvfsitgrgtvvtgrvergevkvgeeveivglketkk...ttvtgvemfkklldeakagdnvgvllrgvkkeeier.g..qvlakpgsikphkkfeaevyvl 312
                 ee++rg+ti++++ e+ tek hy+ +d pgh d++knmi+gaaq d a+l+v a               g + q++  h  l + +gv +l++ +nk+d  +         + v  e++++l +    +df  + vp++  s      l+                 + + +i  l + ++++   p r+   p+ l++  ++ i+g g v +grve+g vk +eev  +  ++  +     v  +em +   + ak gdnvg+ ++g++k+++ r g  ++  k  s+    +f+a++  l
  MMETSP1137-20121227|9082_1   3 EERERGVTISCTTKEFFTEKWHYTIIDAPGHRDFIKNMISGAAQADVALLMVPADGnfttaiqkgnhkaGEVQQAHvTHARLQNLLGVKQLIIGVNKMDTDTAGpyskARYDEVGGEMKNMLIKvgwkKDFVEKSVPVLPLSGWmgDNLNkksenmswwegvdvLVXKTTMHINTLYDCLNDMCSPPGRNETSPMRLPVSGIYKIKGVGDVLAGRVEQGLVKPNEEVVFMPTNTPANpcgGKVFTIEMHHTRHEVAKPGDNVGLNIKGLDKQNMPRvGdvMIYKKDXSLDQCGQFSAQIQTL 304
                 9**************************************************98743111111111111122333322456677789************9876532222567889999999997522226788889***865544114454677788888876555566777899999***************************************************99998655422257999****************************98865224456889999999999999876 PP

>> TIGR02034  CysN: sulfate adenylyltransferase, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  113.5   0.0   6.3e-36   2.6e-33      60     400 ..       3     391 ..       1     396 [. 0.78

  Alignments for each domain:
  == domain 1    score: 113.5 bits;  conditional E-value: 6.3e-36
   TIGR02034  60 aereqgitidvayryfstdkrkfivadtPGheqytrnmatgastadlavllvda.............rkGvleqtr.rhsiiasllGikhvvlavnkidlvd...ydeevfeeikkdylalaeklg......vsdvtviPlsalkGdnvveksesmpWyeGptllevletveve...........e..saeeeelrlpvqyvnrpnldfrGyaGtiasGsvkvGdevvvlpsgres.....rvarivtfdgelekaeaGeavtlvle..deidisr.Gdl.laaadeapevadqfaaelvwlad.eallpGksyk..lklgtkkvrasvaeikhkvdvnt..lekeaakelelneiglvklsldeeialdayeenrttGafilidrlsnat 400
                  ere+g+ti  + + f t+k ++ + d+PGh  + +nm+ ga+ ad+a+l+v a             + G ++q++  h+ +  llG+k++++ vnk+d      y+++ ++e+  + +++  k+g       ++v v+Pls+  Gdn+ +kse+m W+eG+ +l    t++++              + e++++rlpv  + + +     +aG +  G vk+ +evv +p ++ +     +v  i   +   e a+ G+ v l ++  d+ ++ r Gd+ + ++d +++   qf+a++ +l+    ++ G s    ++ g +  ra   e k+kv  +t   + e+ ++l+ ne+++v    ++++++d++++ + +  + ++d  +   
  MMETSP1137-20121227|9082_1   3 EERERGVTISCTTKEFFTEKWHYTIIDAPGHRDFIKNMISGAAQADVALLMVPAdgnfttaiqkgnhKAGEVQQAHvTHARLQNLLGVKQLIIGVNKMDTDTagpYSKARYDEVGGEMKNMLIKVGwkkdfvEKSVPVLPLSGWMGDNLNKKSENMSWWEGVDVLVXKTTMHINtlydclndmcsPpgRNETSPMRLPVSGIYKIKGVGDVLAGRVEQGLVKPNEEVVFMPTNTPAnpcggKVFTIEMHHTRHEVAKPGDNVGLNIKglDKQNMPRvGDVmIYKKDXSLDQCGQFSAQIQTLDIpGEIKLGYSPIgfVRCGRSACRA--VEFKFKVGKETggKKMENPHSLKSNEMAEVVFRPQQPLVVDSFKNCEGLSRIAFLDGNTAVM 391
                 69**************************************************874444444433332345555654379********************7533449********999998877764111111567999************************99877777666522222211111122457899**********9999999********************998762223368888888899999*********987555667766699625688999*************99525688887754226666555555..566666665551156778899************************99999999999887665 PP

>> TIGR00475  selB: selenocysteine-specific translation elongation factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.1   0.1   4.9e-14     2e-11      30     116 ..       3     103 ..       1     135 [. 0.71
   2 !   43.6   0.0   8.8e-15   3.6e-12     172     258 ..     192     285 ..     166     307 .. 0.81

  Alignments for each domain:
  == domain 1    score: 41.1 bits;  conditional E-value: 4.9e-14
   TIGR00475  30 eEkKRGltiDlGyaylpledkvlgliDvPGHekflknalagvggidaalLvvdade.............Gvkaqtk.EHLavlkllgikelivvltKaDrv 116
                 eE+ RG+ti      +  e+   ++iD+PGH  f+kn+++g + +d alL+v ad              G   q +  H ++ +llg+k+li+ ++K+D  
  MMETSP1137-20121227|9082_1   3 EERERGVTISCTTKEFFTEKWHYTIIDAPGHRDFIKNMISGAAQADVALLMVPADGnfttaiqkgnhkaGEVQQAHvTHARLQNLLGVKQLIIGVNKMDTD 103
                 899*************************************************9875121111111111122233322577888899999999999999963 PP

  == domain 2    score: 43.6 bits;  conditional E-value: 8.8e-15
   TIGR00475 172 dkqkplrlaiDraFkvKGaGtvvtGtafsGevkvgDelvlepinkkv.....rvkalqaqnqsvekavAGqRialnladvdkeklkRG..llil 258
                 +  +p+rl++  ++k+KG+G v+ G + +G vk ++e+v  p+n +      +v +++ +++  e a  G+ ++ln++++dk+++ R   ++i 
  MMETSP1137-20121227|9082_1 192 NETSPMRLPVSGIYKIKGVGDVLAGRVEQGLVKPNEEVVFMPTNTPAnpcggKVFTIEMHHTRHEVAKPGDNVGLNIKGLDKQNMPRVgdVMIY 285
                 6789****************************************986555559********************************995464333 PP

>> TIGR01394  TypA_BipA: GTP-binding protein TypA/BipA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.5   0.0   6.6e-15   2.7e-12      45     270 ..       4     264 ..       1     290 [. 0.75

  Alignments for each domain:
  == domain 1    score: 43.5 bits;  conditional E-value: 6.6e-15
   TIGR01394  45 ererGitilakntavkykdtkinivDtPGhaDfGGevervlsmvdgvlllvDa.............seGplpqtrfvlkkalelgl...kpivvinkiDrp......darpeevvdevfdLfvelgaddeqld..fpvvyasakeGvasle..............eedesedleplfdailehvpaPkadkdeplqllvttldydeylGriaigrverGkvkkgqqvallkkdgkiekariskllafeglerveideaeaGdiv 270
                 ererG+ti + +     ++ +  i+D+PGh Df  ++       d +ll+v a             + G + q   v++  l+  l   + i+ +nk+D +      +ar +ev  e+ ++++++g +++ ++  +pv+  s+  G    +                +++ +++ l+d + ++  +P  ++ +p++l v+ + + + +G ++ grve+G vk +++v ++ ++   +     k++++  +++++ + a+ Gd v
  MMETSP1137-20121227|9082_1   4 ERERGVTISCTTKEFFTEKWHYTIIDAPGHRDFIKNMISGAAQADVALLMVPAdgnfttaiqkgnhKAGEV-QQAHVTHARLQNLLgvkQLIIGVNKMDTDtagpysKARYDEVGGEMKNMLIKVGWKKDFVEksVPVLPLSGWMGDNLNKksenmswwegvdvlVXKTTMHINTLYDCLNDMCSPPGRNETSPMRLPVSGIYKIKGVGDVLAGRVEQGLVKPNEEVVFMPTNTPANP-CGGKVFTI-EMHHTRHEVAKPGDNV 264
                 9***********************************9999999******9987333222221111123444.4456666666654322257889*****8622223257999****************99887336777778777765444678999999999987788889*******************************************************99987743332.22333332.2344445556666655 PP

>> TIGR03680  eif2g_arch: translation initiation factor 2, gamma subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.4   0.0   4.9e-10     2e-07      81     151 ..      23     106 ..       3     154 .. 0.66
   2 ?    3.8   0.0     0.015         6     227     293 ..     209     268 ..     168     294 .. 0.80
   3 ?   -2.1   0.0      0.91   3.7e+02      43      56 ..     310     323 ..     275     342 .. 0.78

  Alignments for each domain:
  == domain 1    score: 28.4 bits;  conditional E-value: 4.9e-10
   TIGR03680  81 rkvsfvDaPGhetLmatmlsGaalmdgalLviaaneevPqp...........q..tkehlvaleiigiknivivqnkidlvske 151
                  + +++DaPGh  ++  m+sGaa  d alL++ a+ ++  +           q     h    +++g+k+++i  nk+d  +  
  MMETSP1137-20121227|9082_1  23 WHYTIIDAPGHRDFIKNMISGAAQADVALLMVPADGNFTTAiqkgnhkagevQqaHVTHARLQNLLGVKQLIIGVNKMDTDTAG 106
                 45679***************************9987665432111111111121123455567899************986654 PP

  == domain 2    score: 3.8 bits;  conditional E-value: 0.015
   TIGR03680 227 lkGGviGGslvqGklkvgdeieirPGikvekegkteyepiltevtsleagkkkveeakPgGlvavgt 293
                  +G v+ G + qG +k ++e+   P            +p   +v  +e+ +++ e akPg  v++  
  MMETSP1137-20121227|9082_1 209 GVGDVLAGRVEQGLVKPNEEVVFMPTNTPA-------NPCGGKVFTIEMHHTRHEVAKPGDNVGLNI 268
                 3588*****************999975554.......499999999999999999999999998865 PP

  == domain 3    score: -2.1 bits;  conditional E-value: 0.91
   TIGR03680  43 iklGyadaeikkce 56 
                 iklGy  + +++c 
  MMETSP1137-20121227|9082_1 310 IKLGYSPIGFVRCG 323
                 78888888888884 PP

>> TIGR01393  lepA: GTP-binding protein LepA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   1.7e-06    0.0007      46     103 ..       4      56 ..       2      67 .. 0.85
   2 !   12.2   0.0   2.2e-05    0.0091     162     282 ..     169     292 ..     158     303 .. 0.78

  Alignments for each domain:
  == domain 1    score: 15.9 bits;  conditional E-value: 1.7e-06
   TIGR01393  46 ererGitikaqavrlkykakdgeeyvlnlidtPGhvdfsyevsrslaaceGalllvda 103
                 ererG+ti  ++ ++ +     e+++  +id+PGh df  ++    a ++ all+v a
  MMETSP1137-20121227|9082_1   4 ERERGVTISCTTKEF-F----TEKWHYTIIDAPGHRDFIKNMISGAAQADVALLMVPA 56 
                 9*******8876543.3....4679999************999999999******987 PP

  == domain 2    score: 12.2 bits;  conditional E-value: 2.2e-05
   TIGR01393 162 aktGigieelleaivkkvpaPkgdkeaplkalifdsvydayrGvvvyvrvveGkikkgdkikllstgkeyeveevgvltpkl..vkeeelkaGe.vGyliagikdvkdvkvGdtitsvkkpake 282
                  kt + i+ l + + +  ++P  ++++p++  +   +  +  G v+  rv +G +k+++++ ++ t++  +     v+t+++  +++e  k G+ vG  i g+ + +  +vGd +   k+ + +
  MMETSP1137-20121227|9082_1 169 XKTTMHINTLYDCLNDMCSPPGRNETSPMRLPVSGIYKIKGVGDVLAGRVEQGLVKPNEEVVFMPTNTPANPCGGKVFTIEMhhTRHEVAKPGDnVGLNIKGLDKQNMPRVGDVMIYKKDXSLD 292
                 68889999999988888888888888888866655555566777999*******************99888776666666663256666677744******************99887776655 PP

>> TIGR00484  EF-G: translation elongation factor G
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.0   2.2e-07   8.8e-05      55     145 ..       3     108 ..       1     135 [. 0.62

  Alignments for each domain:
  == domain 1    score: 18.6 bits;  conditional E-value: 2.2e-07
   TIGR00484  55 qekerGititsaattvewkdfrinlidtPGhvdftveverslrvl.........dG....avavldavaG.vepqsetvwrqakkyevPrivf.vnkmdkiGanfl 145
                  e+erG+ti+ ++ + + ++++  +id+PGh df  ++                dG    a+   + +aG v+    t  r  +  +v +++  vnkmd   a ++
  MMETSP1137-20121227|9082_1   3 EERERGVTISCTTKEFFTEKWHYTIIDAPGHRDFIKNMISGAAQAdvallmvpaDGnfttAIQKGNHKAGeVQQAHVTHARLQNLLGVKQLIIgVNKMDTDTAGPY 108
                 69*******99999999999**************765443333330000011115522112222222333356666677777777777765433788877766665 PP

>> TIGR00503  prfC: peptide chain release factor 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   3.2e-06    0.0013      61     115 ..       4      58 ..       1     131 [. 0.77

  Alignments for each domain:
  == domain 1    score: 15.0 bits;  conditional E-value: 3.2e-06
   TIGR00503  61 ekqrGisittsvlqfdyrdklvnlldtpGhedfsedtyrtltavdsalmvidaak 115
                 e++rG++i+++  +f  +     ++d+pGh+df ++     + +d al+++ a  
  MMETSP1137-20121227|9082_1   4 ERERGVTISCTTKEFFTEKWHYTIIDAPGHRDFIKNMISGAAQADVALLMVPADG 58 
                 899************99999***************************99987643 PP

>> TIGR00487  IF-2: translation initiation factor IF-2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.1   9.3e-06    0.0038     136     204 ..      24     107 ..       7     138 .. 0.73
   2 ?    0.0   0.0      0.14        57     496     574 ..     200     283 ..     150     293 .. 0.57

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 9.3e-06
   TIGR00487 136 kitflDtPGheaftsmrarGakvtDivvlvvaadDG....vkpqtiea.......iehakaanv....PiivainkiDkpeanp 204
                 + t +D+PGh  f +    Ga  +D+++l+v ad      +++    a       + ha+  n      +i+ +nk+D ++a p
  MMETSP1137-20121227|9082_1  24 HYTIIDAPGHRDFIKNMISGAAQADVALLMVPADGNfttaIQKGNHKAgevqqahVTHARLQNLlgvkQLIIGVNKMDTDTAGP 107
                 5699**********99999**************964221144443333232222367777766433336899999999988876 PP

  == domain 2    score: 0.0 bits;  conditional E-value: 0.14
   TIGR00487 496 evrevfkvpkiGaiaGcvvkeGvikrdnklrvlrdgvvi..feGeidsLkrfkddvkeveegyeCGivik...nyndikvGDii 574
                  v  ++k+  +G +  + v++G++k ++++  +  ++      G++ ++    +  +  + g + G+ ik   + n  +vGD++
  MMETSP1137-20121227|9082_1 200 PVSGIYKIKGVGDVLAGRVEQGLVKPNEEVVFMPTNTPAnpCGGKVFTIEMHHTRHEVAKPGDNVGLNIKgldKQNMPRVGDVM 283
                 566667777777766667777777776666666555433113455555555444444444455555554311133444555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (402 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       114  (0.0277913); expected 82.0 (0.02)
Passed bias filter:                       96  (0.0234032); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                        10  (0.00243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.52u 0.18s 00:00:00.70 Elapsed: 00:00:00.60
# Mc/sec: 884.33
//
Query:       MMETSP1137-20121227|9083_1  [L=386]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (386 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        56  (0.0136519); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.13s 00:00:00.41 Elapsed: 00:00:00.28
# Mc/sec: 1819.56
//
Query:       MMETSP1137-20121227|9084_1  [L=171]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (171 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        55  (0.0134081); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.15s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 778.28
//
Query:       MMETSP1137-20121227|9085_1  [L=366]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (366 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        65  (0.0158459); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.13s 00:00:00.40 Elapsed: 00:00:00.42
# Mc/sec: 1150.19
//
Query:       MMETSP1137-20121227|9086_1  [L=473]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   2.7e-271  898.3   7.6   3.1e-271  898.2   5.3    1.0  1  TIGR03039 PS_II_CP47: photosystem II chlorophyll-binding protein CP47
    4.2e-14   50.3  11.9    1.6e-09   35.3   5.6    3.5  2  TIGR01153 psbC: photosystem II 44 kDa subunit reaction center protein
    1.5e-12   45.4   5.7    0.00024   18.5   0.2    3.6  3  TIGR03041 PS_antenn_a_b: chlorophyll a/b binding light-harvesting protein


Domain annotation for each model (and alignments):
>> TIGR03039  PS_II_CP47: photosystem II chlorophyll-binding protein CP47
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  898.2   5.3  2.3e-274  3.1e-271      37     504 .]       1     468 [.       1     468 [. 1.00

  Alignments for each domain:
  == domain 1    score: 898.2 bits;  conditional E-value: 2.3e-274
   TIGR03039  37 malyelaifdpsdavlnpmwrqgmyvlpfmarlgvteswsgwsitgetavdpgfwsfegvaaahivlsgllllaavwhwvywdlelfrdprtgepaldlpkifgihlllsgllcfgfgafhlsglfgpglwvsdpygltgsvepvapewgadgfnpfnpggivahhiaagivgilaglfhllvrpperlykalrlgnietvlasalaavlfaafvvagtlwygsattpvelfgptryqwdsgyfkkeinrrvqaavakgaskeeaysaipeklafydyvgnspakgglfrtgalvkgdgiatgwlghavfkdkegeelevrrlpnlfenfpvvledkegvvradipfrraeakysfeqtgvtvslyggelngktftdpaqvkkyarkaqlgeifefdretldsdgvfrtsprgwftfahavfallflfghlwhgartlfrdvfagidaeleeqvefgvfkklgdettr 504
                 malyela+fdpsd+vlnpmwrqgm+v+pfmarlgvt+sw+gwsitge+  +pg+wsfegva++hivlsgl +laa+whwvywdlelfrdprtgepaldlpkifgihl+l+ llcfgfgafh++g fgpg+wvsd+yg+tg v+ vap+wg++gfnpfnpggi++hhiaagi+gilag+fhl++rpp+rly+alr+gnietvl+s+++av+faaf+ +gt+wyg+attp+elfgptryqwdsgyf++ei+rrv+a++++g s+++a+s ip+klafydy+gn+pakgglfr+g+++kgdgia++wlgh+vf+dkeg+el+vrr+p++fe+fpv+l+dk+g+vradipfrrae+kys+eq gv++ +ygg+lng+ ftd+++vkkyark+qlge+fefdr tl+sdgvfr+sprgw+tf+ha+fallf++ghlwhg rtlfrdvfagi ae+ eqvefg f+klgd++t+
  MMETSP1137-20121227|9086_1   1 MALYELAVFDPSDPVLNPMWRQGMFVMPFMARLGVTDSWGGWSITGESVSNPGIWSFEGVALTHIVLSGLCFLAAIWHWVYWDLELFRDPRTGEPALDLPKIFGIHLFLASLLCFGFGAFHVTGAFGPGIWVSDAYGVTGRVQAVAPAWGPEGFNPFNPGGIASHHIAAGILGILAGVFHLTIRPPQRLYRALRMGNIETVLSSSISAVFFAAFITSGTMWYGAATTPIELFGPTRYQWDSGYFQQEIERRVEASISEGLSLSQAWSRIPDKLAFYDYIGNNPAKGGLFRAGPMNKGDGIAEAWLGHPVFQDKEGRELTVRRMPAFFETFPVILVDKDGIVRADIPFRRAESKYSIEQVGVSCNFYGGKLNGQVFTDAPTVKKYARKSQLGEVFEFDRTTLESDGVFRSSPRGWYTFGHANFALLFFLGHLWHGGRTLFRDVFAGIGAEVLEQVEFGAFQKLGDKSTK 468
                 9********************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************996 PP

>> TIGR01153  psbC: photosystem II 44 kDa subunit reaction center protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.3   5.6   1.2e-12   1.6e-09      35     275 ..       1     237 [.       1     249 [. 0.71
   2 !   10.8   0.1   3.1e-05     0.043     381     422 ..     402     445 ..     380     455 .. 0.78

  Alignments for each domain:
  == domain 1    score: 35.3 bits;  conditional E-value: 1.2e-12
   TIGR01153  35 mllfevahftfd....kplyeqglillphvatlg....y.gvgtgge.vvd..ifpffvvgvlhlissavlglggiyhslagp.eileeassffsldwkdknqmtnilgyhlillgvgalllvlkalffggvydtwapgggdvrlvtnptldpavifgyllkspfggegwiisvnslediigghiyvglvlivggifhivtkpfgwarraf.iwsgeaylsyslgalslvgfiasayvwfnntaypsefygptea 275
                 m l+e+a f       +p++ qg+ ++p +a lg    + g   +ge v +  i+ f  v + h++ s +  l  i+h +    e +++  +      +   ++ +i+g+hl l  + ++   + a ++ g++ +   +  d   vt             +   +g eg+     +   i   hi  g++ i+ g+fh+  +p     ra+ + + e+ ls s++a+ +++fi+s  +w+ +++ p e++gpt  
  MMETSP1137-20121227|9086_1   1 MALYELAVFDPSdpvlNPMWRQGMFVMPFMARLGvtdsWgGWSITGEsVSNpgIWSFEGVALTHIVLSGLCFLAAIWHWVYWDlELFRD--PRT---GEPALDLPKIFGIHLFLASLLCFG--FGAFHVTGAFGPG-IWVSDAYGVTGRVQ--------AVAPAWGPEGFN--PFNPGGIASHHIAAGILGILAGVFHLTIRPPQRLYRALrMGNIETVLSSSISAVFFAAFITSGTMWYGAATTPIELFGPTRY 237
                 7899999998762233589**************933333223334553443449************************88654044433..222...233456788999999886665543..3445555555432.23333333322211........223446666653..2344568889*********************999999845689************************************975 PP

  == domain 2    score: 10.8 bits;  conditional E-value: 3.1e-05
   TIGR01153 381 evnsvnyvslrqwlaasqfvlaffllvghlwhagra..raaaag 422
                 e + v   s+r w +  +  +a+++++ghlwh gr+  r + ag
  MMETSP1137-20121227|9086_1 402 ESDGVFRSSPRGWYTFGHANFALLFFLGHLWHGGRTlfRDVFAG 445
                 6667777899****999999999999*********744555555 PP

>> TIGR03041  PS_antenn_a_b: chlorophyll a/b binding light-harvesting protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.2   1.8e-07   0.00024      33     109 ..       1      89 [.       1     144 [. 0.72
   2 !   16.6   0.1   6.3e-07   0.00086     192     265 ..     164     235 ..     155     266 .. 0.80
   3 !   10.6   0.1   4.2e-05     0.058     284     315 ..     404     437 ..     375     442 .. 0.79

  Alignments for each domain:
  == domain 1    score: 18.5 bits;  conditional E-value: 1.8e-07
   TIGR03041  33 stlfelarydps....lpmgeqglillphlaslGi.....Gvdeagvvvdty...pvvviavlhlilsavlgaggllhsllfeedlees 109
                 ++l+ela +dps     pm  qg+ ++p +a lG+     G + +g+ v +    ++  +a  h++ls +   ++++h ++ + +l   
  MMETSP1137-20121227|9086_1   1 MALYELAVFDPSdpvlNPMWRQGMFVMPFMARLGVtdswgGWSITGESVSNPgiwSFEGVALTHIVLSGLCFLAAIWHWVYWDLELFRD 89 
                 589********9444347999*************933333334444444443111345699*****************99988777554 PP

  == domain 2    score: 16.6 bits;  conditional E-value: 6.3e-07
   TIGR03041 192 gGhaflallliaGgafhivtkqlgeakklkgkgllsaeavlsyslagialmaivaaffvavnttvyPvefyGep 265
                 + h+  ++l i  g+fh++ ++ +   + +   + + e+vls s++++ ++a++++  +       P+e++G++
  MMETSP1137-20121227|9086_1 164 SHHIAAGILGILAGVFHLTIRPPQRLYRAL--RMGNIETVLSSSISAVFFAAFITSGTMWYGAATTPIELFGPT 235
                 679999**************9998887777..68899*****************97555555556699***984 PP

  == domain 3    score: 10.6 bits;  conditional E-value: 4.2e-05
   TIGR03041 284 ega..htsrawlanvhfylgffflqGhlwhalra 315
                 +g+   + r w +  h  ++++f+ Ghlwh  r+
  MMETSP1137-20121227|9086_1 404 DGVfrSSPRGWYTFGHANFALLFFLGHLWHGGRT 437
                 33345788**********************9776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (473 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        76  (0.0185275); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.37u 0.14s 00:00:00.51 Elapsed: 00:00:00.51
# Mc/sec: 1224.13
//
Query:       MMETSP1137-20121227|9087_1  [L=182]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (182 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       122  (0.0297416); expected 82.0 (0.02)
Passed bias filter:                      117  (0.0285227); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.18s 00:00:00.37 Elapsed: 00:00:01.12
# Mc/sec: 212.58
//
Query:       MMETSP1137-20121227|9088_1  [L=713]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.8e-07   26.0  24.3    1.6e-06   24.0   0.0    2.1  2  TIGR02169 SMC_prok_A: chromosome segregation protein SMC
      2e-05   21.8   0.0      2e-05   21.8   0.0    1.9  2  TIGR00611 recf: DNA replication and repair protein RecF
     0.0034   13.0  32.9      0.043    9.3   0.1    2.1  2  TIGR02168 SMC_prok_B: chromosome segregation protein SMC
  ------ inclusion threshold ------
      0.016   12.7   0.0      0.047   11.2   0.0    1.7  1  TIGR03411 urea_trans_UrtD: urea ABC transporter, ATP-binding protein UrtD
      0.036   11.3   0.6       0.22    8.7   0.1    2.2  2  TIGR01978 sufC: FeS assembly ATPase SufC


Domain annotation for each model (and alignments):
>> TIGR02169  SMC_prok_A: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.0   0.0   1.9e-09   1.6e-06      24     142 ..     316     434 ..     308     449 .. 0.80
   2 !    2.4  15.0    0.0063       5.2     336     501 ..     532     697 ..     468     712 .. 0.51

  Alignments for each domain:
  == domain 1    score: 24.0 bits;  conditional E-value: 1.9e-09
   TIGR02169  24 gftvisGpNGSGKSNiiDallFaLGlssskalRAerLsdLiskgakeaksakeaeVtvtfknddkklp.......delevsrrlkvtkegk.ySyYylNgksvrlseihdlLakagiypegYnvVlQ 142
                   + i GpNGSGKS i+ ++  aLG ++  a R      Li  g +e+ + + +   v  +  ++  p         l+v+  l +t +g    +Y++Ng +v++s +  l  ++gi  +   +VlQ
  MMETSP1137-20121227|9088_1 316 HANFIIGPNGSGKSAILTSIVVALGGKRGGA-R-----SLITDG-REQGKITLCLCDVGADAFGAS-PsdasgqfVVLRVECTLSRTRSGVvNCTYKINGVAVSKSALSALCDRFGILVDNPCIVLQ 434
                 55789*********************98654.3.....589997.776777888888876666655.3466655555666777888888886799*****************************998 PP

  == domain 2    score: 2.4 bits;  conditional E-value: 0.0063
   TIGR02169 336 keeieelereieeekkereklkeelkelkeeleelraeleevdkeaaelreelkelkeklekl.keelnelkreldrlleelkrleeelaelkaelerieekiaeleeeleelaeeikkaeqkleqlkedlekaekelrklkeeleklekelselerelaeleaqak 501
                 +++++  + e e+ +++   l++e++ l+++ ++ ++ l+   ++ +++r+e++ ++  + +  +e++   k  +++l  + + ++e+ a lk +le+ +    + e ++ + a+++++a+ +le lk+ +++a +e  +  e ++    e  ++er  a++ aqa 
  MMETSP1137-20121227|9088_1 532 RRKHACARLEAESARRRVSLLETEVAPLRATAAKAEETLATCLARDDATRAEHARRQADMTDSiNEKRRARKAAKNKLEGQMQLVNEAKAALKDALEGRNVP-SAQEGAARAQAARVAAAKAELEALKAAVAAAVEESARAAEAVATAVMEADDAERSDAKATAQAA 697
                 222222223344444455555566666666666666666666666666666666555544333033333333333334333333444444444444443322.2233344445555666666666666666666555555555555555555555555444444442 PP

>> TIGR00611  recf: DNA replication and repair protein RecF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.8   0.0   2.4e-08     2e-05       4      46 ..     296     338 ..     294     344 .. 0.91
   2 ?   -3.3   0.3         1   8.3e+02     190     244 ..     644     701 ..     602     705 .. 0.56

  Alignments for each domain:
  == domain 1    score: 21.8 bits;  conditional E-value: 2.4e-08
   TIGR00611   4 krLllkdfRnyeevdlelspgvnvlvGeNgqGKtnlleaiyyl 46 
                  +++l++  + e++ lel  + n+++G+Ng+GK  +l +i+++
  MMETSP1137-20121227|9088_1 296 LSIQLESIQCHENLYLELGRHANFIIGPNGSGKSAILTSIVVA 338
                 57899999*******************************9886 PP

  == domain 2    score: -3.3 bits;  conditional E-value: 1
   TIGR00611 190 gakvvakRaelieklepeaekayqlllpeleslsleyrs....ekeekeeeyaeaLakn 244
                 +a+v+a++ael e+l++ + +a ++ +++ e+ +         e+++ ++  ++aL+++
  MMETSP1137-20121227|9088_1 644 AARVAAAKAEL-EALKAAVAAAVEESARAAEAVATAVMEaddaERSDAKATAQAALEHA 701
                 44444444443.44555555555555555554444443333323555555555555555 PP

>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.3   0.1   5.3e-05     0.043      28      48 ..     320     340 ..     308     346 .. 0.86
   2 !    6.5  19.3   0.00037       0.3     687     884 ..     508     705 ..     442     713 .] 0.49

  Alignments for each domain:
  == domain 1    score: 9.3 bits;  conditional E-value: 5.3e-05
   TIGR02168  28 iVGPNGcGKSNivDAirWVLG 48 
                 i+GPNG+GKS i+  i   LG
  MMETSP1137-20121227|9088_1 320 IIGPNGSGKSAILTSIVVALG 340
                 9**********9988877777 PP

  == domain 2    score: 6.5 bits;  conditional E-value: 0.00037
   TIGR02168 687 eieeleekiaelekelkelekeleeleeeleklrkeleelerklselkkelerlekeveqleerlaqlekeleeleeereeleee.leeaeeelkeaeeeieeleaeieqlkeelkalrealseleaeltelkeeaaekeerleslekeiaalekeleeleeqieeleeeiesleaeieeleeele..eleeeleellkek 884
                  ++ ++ek+a +  +l+   +el + +   + +r e+e+++r++s l++e++ l++++ ++ee+la   ++    ++e +  +++  ++ +e+  + ++ +++le +++  +e+ +al++al+  +   ++++ +a+ ++ r++  ++e++al+  +  + e++++++e ++ +  e +++e++ +  +++++le++ ++ 
  MMETSP1137-20121227|9088_1 508 AVDSQAEKVALTASTLAGETTELVRRK--HACARLEAESARRRVSLLETEVAPLRATAAKAEETLATCLARDDATRAEHARRQADmTDSINEKRRARKAAKNKLEGQMQLVNEAKAALKDALEGRNVP-SAQEGAARAQAARVAAAKAELEALKAAVAAAVEESARAAEAVATAVMEADDAERSDAkaTAQAALEHAREQL 705
                 333333333333333333333333333..233333444445666666666666666666666665554444444433333333320233333334444445555555555554444444444443332.233333333444555666666666666666666666666666655555555555433112333334444333 PP

>> TIGR03411  urea_trans_UrtD: urea ABC transporter, ATP-binding protein UrtD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   5.8e-05     0.047       9      49 ..     297     336 ..     293     353 .. 0.78

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 5.8e-05
   TIGR03411   9 svsfdgfkalndlslsveegelrviiGpnGaGkttllDvit 49 
                 s++ ++++  ++l l++ + +  +iiGpnG+Gk+ +l  i+
  MMETSP1137-20121227|9088_1 297 SIQLESIQCHENLYLELGR-HANFIIGPNGSGKSAILTSIV 336
                 5666777777777777765.579***********9998765 PP

>> TIGR01978  sufC: FeS assembly ATPase SufC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   0.1   0.00027      0.22      18      47 ..     308     336 ..     292     350 .. 0.70
   2 ?   -0.0   0.0      0.13     1e+02      66     107 ..     470     514 ..     457     550 .. 0.56

  Alignments for each domain:
  == domain 1    score: 8.7 bits;  conditional E-value: 0.00027
   TIGR01978  18 glnlevkkGevhaimGpnGsGkstLskvla 47 
                 +l le+ + +   i+GpnGsGks + + ++
  MMETSP1137-20121227|9088_1 308 NLYLELGR-HANFIIGPNGSGKSAILTSIV 336
                 33333333.346799********9887664 PP

  == domain 2    score: -0.0 bits;  conditional E-value: 0.13
   TIGR01978  66 llelev.eeraraGlflafqapee..ipGvsnkeflrsalnavrk 107
                 ++ l+  e +ar G + + q+p+   +p + ++    +a++++ +
  MMETSP1137-20121227|9088_1 470 VARLKRaETQARVGAYTSEQHPKSrsVPLLRTAYVASAAVDSQAE 514
                 55565415589**********975226655555554445544443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (713 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       344  (0.0838615); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                        28  (0.00682594); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.61u 0.15s 00:00:00.76 Elapsed: 00:00:00.67
# Mc/sec: 1404.60
//
Query:       MMETSP1137-20121227|9089_1  [L=366]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.017   13.0   1.0      0.017   13.0   0.7    4.8  5  TIGR03370 VPLPA-CTERM: VPLPA-CTERM protein sorting domain


Domain annotation for each model (and alignments):
>> TIGR03370  VPLPA-CTERM: VPLPA-CTERM protein sorting domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.7   4.1e-06     0.017       4      19 ..     139     154 ..     137     154 .. 0.95
   2 ?   -2.6   6.9       0.3   1.2e+03      12      21 ..     167     176 ..     158     179 .. 0.71
   3 ?   -2.4   1.3      0.27   1.1e+03      13      19 ..     185     191 ..     182     191 .. 0.76
   4 ?   -4.6   1.6         1   4.1e+03      10      16 ..     250     256 ..     250     256 .. 0.76
   5 ?   -7.6   4.8         1   4.1e+03      11      15 ..     263     267 ..     258     275 .. 0.62

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 4.1e-06
   TIGR03370   4 PAgalLLLaGLGGLga 19 
                 PAg +++++G+GG+g+
  MMETSP1137-20121227|9089_1 139 PAGRPMMMGGMGGMGM 154
                 **************96 PP

  == domain 2    score: -2.6 bits;  conditional E-value: 0.3
   TIGR03370  12 aGLGGLgavR 21 
                 +G+GG+g+++
  MMETSP1137-20121227|9089_1 167 GGMGGMGGMG 176
                 5666666664 PP

  == domain 3    score: -2.4 bits;  conditional E-value: 0.27
   TIGR03370  13 GLGGLga 19 
                 G+GG+g+
  MMETSP1137-20121227|9089_1 185 GMGGMGG 191
                 7888885 PP

  == domain 4    score: -4.6 bits;  conditional E-value: 1
   TIGR03370  10 LLaGLGG 16 
                 +++G+GG
  MMETSP1137-20121227|9089_1 250 MGGGMGG 256
                 5789887 PP

  == domain 5    score: -7.6 bits;  conditional E-value: 1
   TIGR03370  11 LaGLG 15 
                 ++G+G
  MMETSP1137-20121227|9089_1 263 GGGMG 267
                 34444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (366 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        74  (0.01804); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.28u 0.16s 00:00:00.44 Elapsed: 00:00:00.42
# Mc/sec: 1150.19
//
Query:       MMETSP1137-20121227|9090_1  [L=366]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (366 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       119  (0.0290102); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.16s 00:00:00.44 Elapsed: 00:00:00.48
# Mc/sec: 1006.42
//
Query:       MMETSP1137-20121227|9091_1  [L=183]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (183 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        49  (0.0119454); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.16s 00:00:00.35 Elapsed: 00:00:00.26
# Mc/sec: 929.00
//
Query:       MMETSP1137-20121227|9092_1  [L=706]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (706 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       124  (0.0302292); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.15s 00:00:00.59 Elapsed: 00:00:00.64
# Mc/sec: 1456.00
//
Query:       MMETSP1137-20121227|9093_1  [L=508]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (508 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       192  (0.0468064); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.15s 00:00:00.59 Elapsed: 00:00:01.05
# Mc/sec: 638.58
//
Query:       MMETSP1137-20121227|9094_1  [L=173]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (173 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        29  (0.00706972); expected 82.0 (0.02)
Passed bias filter:                       29  (0.00706972); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.16s 00:00:00.33 Elapsed: 00:00:00.28
# Mc/sec: 787.38
//
Query:       MMETSP1137-20121227|9095_1  [L=288]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (288 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        84  (0.0204778); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.17s 00:00:00.39 Elapsed: 00:00:00.47
# Mc/sec: 808.78
//
Query:       MMETSP1137-20121227|9096_1  [L=309]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (309 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       224  (0.0546075); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.13s 00:00:00.38 Elapsed: 00:00:00.39
# Mc/sec: 1045.76
//
Query:       MMETSP1137-20121227|9098_1  [L=243]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0004   17.3   0.0    0.00087   16.2   0.0    1.5  2  TIGR01836 PHA_synth_III_C: poly(R)-hydroxyalkanoic acid synthase, class III, PhaC subunit


Domain annotation for each model (and alignments):
>> TIGR01836  PHA_synth_III_C: poly(R)-hydroxyalkanoic acid synthase, class III, PhaC subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0     0.084   3.4e+02     249     267 ..      50      68 ..      45      83 .. 0.82
   2 !   16.2   0.0   2.1e-07   0.00087     122     151 ..      91     120 ..      70     128 .. 0.87

  Alignments for each domain:
  == domain 1    score: -2.2 bits;  conditional E-value: 0.084
   TIGR01836 249 dlaGeafrqfvkdfyqqnk 267
                  +aG  fr  v d+y+   
  MMETSP1137-20121227|9098_1  50 RIAGAGFRVLVPDIYKGKM 68 
                 68999*********98654 PP

  == domain 2    score: 16.2 bits;  conditional E-value: 2.1e-07
   TIGR01836 122 ikkavdkikrtseldkisllGiCqGGtfsl 151
                 i++a+ ++k+ ++++k+ + G+C+GG+++l
  MMETSP1137-20121227|9098_1  91 ISEAAAHLKQVEKSPKVGVVGFCMGGALTL 120
                 899************************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (243 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       113  (0.0275475); expected 82.0 (0.02)
Passed bias filter:                      110  (0.0268162); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.22u 0.17s 00:00:00.39 Elapsed: 00:00:00.99
# Mc/sec: 323.97
//
Query:       MMETSP1137-20121227|9099_1  [L=131]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (131 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       159  (0.0387616); expected 82.0 (0.02)
Passed bias filter:                      128  (0.0312043); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.14s 00:00:00.30 Elapsed: 00:00:00.37
# Mc/sec: 467.31
//
Query:       MMETSP1137-20121227|9100_1  [L=77]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (77 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        55  (0.0134081); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.12s 00:00:00.26 Elapsed: 00:00:00.26
# Mc/sec: 390.89
//
Query:       MMETSP1137-20121227|9102_1  [L=381]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.8e-58  193.7   0.0    6.9e-58  193.5   0.0    1.1  1  TIGR00478 tly: hemolysin TlyA family protein
    0.00059   17.5   0.0    0.00089   16.9   0.0    1.2  1  TIGR01017 rpsD_bact: ribosomal protein S4
     0.0028   15.0   0.0     0.0067   13.8   0.0    1.6  1  TIGR00438 rrmJ: ribosomal RNA large subunit methyltransferase J
  ------ inclusion threshold ------
      0.045   10.8   0.0       0.13    9.3   0.0    1.7  2  TIGR00005 rluA_subfam: pseudouridine synthase, RluA family


Domain annotation for each model (and alignments):
>> TIGR00478  tly: hemolysin TlyA family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  193.5   0.0   6.7e-61   6.9e-58       1     228 []      83     321 ..      83     321 .. 0.92

  Alignments for each domain:
  == domain 1    score: 193.5 bits;  conditional E-value: 6.7e-61
   TIGR00478   1 rLdvlLvkrglvesRekakrlilkgevlvnkkkvdkPsalvdkdakielvqeel.fvsRggeKLkealeefevdvknkivlDvGsStGGFtdcalqkGAkkvygvdvgknqleekLrqdeRvkvlertniryvtpadiv...PelavvDvSfislikileellslls....dselvllvkpqFevgr.ekknkkgvvkdkeaiaevlekviekleskdfqvkki..lkslikgkkgnvE 228
                 r d++Lv+r ++esR++ak++il g vl+++k v kPsa ++  a i++ + +  fvsR+geKL++al+  ++d ++   lDvG+StGGFtdc+lq GA    +vdvg++ql  +L  d Rv+  e  n ry+t + +     ++ v+DvSfisl+++l+++++ll+    +  l++lvkpqFe+g+   k+ +gvvkd+e++  vl+++ ++ +s+  ++  +  + s+i g +gn E
  MMETSP1137-20121227|9102_1  83 RFDTALVARSMFESRSQAKAAILEGRVLIDGKAVLKPSAVIQPSAVIHVEETKEaFVSRAGEKLQAALTAMQIDPTGMNGLDVGASTGGFTDCLLQGGASSMICVDVGHGQLRPRLADDARVTSFEGINARYLTAEMLPrasFDVIVIDVSFISLQLVLPAVWQLLDtsnpQARLIALVKPQFEAGKqAVKRGRGVVKDQETHDRVLNELRDFATSSLINCTVLqsIDSPILGSDGNRE 321
                 789***********************************************99888*******************************************************************************998877667999******************99853233579************777899******************9877776655544115799*****9987 PP

>> TIGR01017  rpsD_bact: ribosomal protein S4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.0   8.7e-07   0.00089      90     146 ..      82     138 ..      75     156 .. 0.89

  Alignments for each domain:
  == domain 1    score: 16.9 bits;  conditional E-value: 8.7e-07
   TIGR01017  90 sRLDnvvyrlgfaktraaArQLvsHghilvngkkvdipsyqvkpgdlisikekskkl 146
                 +R D+ ++   + ++r++A+  +  g +l++gk v  ps +++p  +i++ e ++ +
  MMETSP1137-20121227|9102_1  82 TRFDTALVARSMFESRSQAKAAILEGRVLIDGKAVLKPSAVIQPSAVIHVEETKEAF 138
                 69999999999***************************************9987654 PP

>> TIGR00438  rrmJ: ribosomal RNA large subunit methyltransferase J
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.0   6.5e-06    0.0067       8     161 ..     134     294 ..     129     303 .. 0.69

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 6.5e-06
   TIGR00438   8 kkekyrsrasfkllqlnekfklikkGklvldlGaaPGGWsqvavekvgekGlviavdl..qpvkpienvdfirGdftdeevlekilervgddkvdvvisdaa.....PnlsGirdi.d....hlrsidlvelaldiakevlkekGnfvvkvfqGeeldeylkelrk 161
                  ke + sra  kl+     +++   G+  ld+Ga+ GG++   ++  ++   +i+vd+   ++ p    d+    f   ++     e+++    dv++ d++       l  ++++ d    ++r i lv+  ++  k+ +k +G  vvk    e+ d++l+elr+
  MMETSP1137-20121227|9102_1 134 TKEAFVSRAGEKLQAALTAMQIDPTGMNGLDVGASTGGFTDCLLQGGAS--SMICVDVghGQLRPRLADDARVTSFEGINARYLTAEMLPRASFDVIVIDVSfislqLVLPAVWQLlDtsnpQARLIALVKPQFEAGKQAVK-RGRGVVK--DQETHDRVLNELRD 294
                 69999***********************************998876666..5666666114566776666666777777777777777788788888777762222212334444223222245777788888887777765.4555666..35666777777775 PP

>> TIGR00005  rluA_subfam: pseudouridine synthase, RluA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0      0.73   7.5e+02     219     234 ..      21      36 ..      18      41 .. 0.87
   2 ?    9.3   0.0   0.00013      0.13       4      60 ..      80     135 ..      78     148 .. 0.82

  Alignments for each domain:
  == domain 1    score: -3.0 bits;  conditional E-value: 0.73
   TIGR00005 219 lTGRtHQiRVHlqylg 234
                 +TGR H  RV  + lg
  MMETSP1137-20121227|9102_1  21 MTGRFHCWRVAAAVLG 36 
                 69********998886 PP

  == domain 2    score: 9.3 bits;  conditional E-value: 0.00013
   TIGR00005   4 egqrldevlaselkdlsrskikklieegqVkvnkkkvtanlklkikdgdlvtvevee 60 
                 eg r d++l+ +    srs++k++i eg+V +++ k + +++  i+  ++++ve  +
  MMETSP1137-20121227|9102_1  80 EGTRFDTALVARSMFESRSQAKAAILEGRVLIDG-KAVLKPSAVIQPSAVIHVEETK 135
                 5789999999888888*****************5.6666678*********965443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (381 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        94  (0.0229157); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.29u 0.12s 00:00:00.41 Elapsed: 00:00:00.49
# Mc/sec: 1026.28
//
Query:       MMETSP1137-20121227|9103_1  [L=590]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   4.1e-154  511.4   0.0   5.1e-154  511.1   0.0    1.0  1  TIGR02765 crypto_DASH: cryptochrome, DASH family
    1.9e-46  156.8   0.0    2.8e-46  156.2   0.0    1.1  1  TIGR03556 photolyase_8HDF: deoxyribodipyrimidine photo-lyase, 8-HDF type
    4.1e-36  122.6   0.1    7.7e-30  101.9   0.3    2.5  3  TIGR02766 crypt_chrom_pln: cryptochrome, plant family
    1.9e-06   25.3   0.0     0.0013   15.9   0.0    2.2  2  TIGR00591 phr2: deoxyribodipyrimidine photolyase


Domain annotation for each model (and alignments):
>> TIGR02765  crypto_DASH: cryptochrome, DASH family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  511.1   0.0    5e-157  5.1e-154      13     431 .]      60     499 ..      55     499 .. 0.93

  Alignments for each domain:
  == domain 1    score: 511.1 bits;  conditional E-value: 5e-157
   TIGR02765  13 leDnellakasskee..elvpvyvfdarqiklsavaglaklGkarakFlaesvadLktsLkklGsdLlvragkpedvlkelvkelk......vravflteeegseeksvekkveealaklkieeklwgst.llheddlpfe..ledlPdvftqfRkkveaklkvrksleapek..lpalpk........sedeganlPtleelveaese....edersslefkGGetsalarvkeyflsks.lksYketRngllgvdystklspwLalGcvsarqihealkrYekergendstywvifeLlWRdyfrflalkygdklFrleGlrgkkaktkedekilekwkegttgyplvdanmreLaatGymsnRgRqnvasflvkelgldWryGaewfetlLvDyDvssnwgnWqylaGvgndpRgaRqFnlekqakdYDpdgeyvktWvkel 431
                 ++Dn++l++a+ ++   e++pvy+fd+r +  ++ +g +k+G++rakFl+esv dL+++L++lGsdLlv  g+ped+++++v+  +       +++  +e+++see +v++++++al+  ++e + ++s  l+ ++dlpf+  l+d+Pdvft fR+kveak+++ k+l+ p k  lp lpk          ++++ lP +++++ ++++     d r +++f+GGet al+r+k+y+++k+ lksY+etRng+lg+dys+k++pwLa Gc+s+r + ++  rYe+ r++n+styw++feL+WRd++r++  k+g k+F  +G  g+k+++  ++  le+wkeg+tg+plvdanmreLaatG+msnRgRqnvas+l+ +l+ldWr Ga++fe+lL+DyDv+snwgnW ++aG++++ R +R Fn++kq+kdYDpdg+y+++W++el
  MMETSP1137-20121227|9103_1  60 VHDNPILTHAAAQAGdkEVLPVYCFDPRSYG-TTAFGSPKTGALRAKFLLESVLDLRAKLRELGSDLLVGYGRPEDIIPRIVTAAAedgvpaNTELLWQEQVTSEELTVDRALRSALPAGTVEARAMSSGlLYAKQDLPFQpdLKDMPDVFTPFRNKVEAKCSIPKPLPPPGKgsLP-LPKslslpddlLAGFDF-LPDASTFGYDAHAfsvaADPRGVMPFHGGETVALSRLKHYLWDKDcLKSYFETRNGMLGADYSSKFAPWLAHGCLSPRLVASECARYETARVKNKSTYWLVFELIWRDFYRLYCEKHGSKVFWPGGPVGEKPEWVDHAPTLERWKEGKTGMPLVDANMRELAATGFMSNRGRQNVASYLALDLQLDWRKGADHFESLLLDYDVCSNWGNWVAAAGLTGG-RVNR-FNIAKQSKDYDPDGKYLRHWLPEL 499
                 8*******9998876579*************.566679********************************************999888988778899999*********************996666665599*******999****************************999644.44424454455556666.88888888887778888999*****************************************************************************************************************************************************************************************************99.****.*********************985 PP

>> TIGR03556  photolyase_8HDF: deoxyribodipyrimidine photo-lyase, 8-HDF type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  156.2   0.0   2.7e-49   2.8e-46      17     431 ..      66     503 ..      57     526 .. 0.82

  Alignments for each domain:
  == domain 1    score: 156.2 bits;  conditional E-value: 2.7e-49
   TIGR03556  17 lglaaarqksakvvglfcldekilkad.....diaparvayllgclqelqerykrlgsellilrgdpvqllpklakaleakav......ywnldvepysrkrdravaaalkekgiavktawdqllhspeei..ltksgkpytvytpfwknwssk.kkaepvetpkeleglteaekeaiakl..gvialptakdlgfewd.........adlilepgeaaaeakleefv..dkaieeyqeqrn.fpaldgtsqlsaalkfgvigirtvwqatlealeasrseearesirtw.qqelawrefyqhalysfpeladgpyrekfkefpwenneahfqawcegktgypivdaamrqlnetgwmhnrcrmivasfltkdliinwqwgekyfmqklidgdlaannggwqwsassgmdpkplrifnpasqaqkfdpeaeyirrwlpelrsld 431
                 l+ aaa++  ++v+ ++c+d++   +         + r  +ll ++ +l+ + ++lgs+ll+  g p +++p++ +a   ++v       w+++v     + dra+ +al + +++++ +   ll++ +++  + + ++   v+tpf +  ++k + ++p+  p + +   ++ ++  + l  g   lp a  +g++ +         + ++++ ge+ a ++l+++   +  +++y e rn + + d +s++++ l  g++++r v +++ + +e++r ++  +    w   el wr+fy+    ++ +    p     ++  w ++   ++ w egktg p+vda mr+l+ tg+m nr r  vas+l  dl ++w++g  +f   l+d d+++n g   w a++g+    +  fn a q++ +dp+++y+r+wlpel+ + 
  MMETSP1137-20121227|9103_1  66 LTHAAAQAGDKEVLPVYCFDPRSYGTTafgspKTGALRAKFLLESVLDLRAKLRELGSDLLVGYGRPEDIIPRIVTAAAEDGVpantelLWQEQVTSEELTVDRALRSALPAGTVEARAMSSGLLYAKQDLpfQPDLKDMPDVFTPFRNKVEAKcSIPKPLPPPGKGSLPLPKSLSLPDDLlaGFDFLPDASTFGYDAHafsvaadprGVMPFHGGETVALSRLKHYLwdKDCLKSYFETRNgMLGADYSSKFAPWLAHGCLSPRLVASEC-ARYETARVKNKST---YWlVFELIWRDFYRLYCEKHGSKVFWPGGPVGEKPEWVDHAPTLERWKEGKTGMPLVDANMRELAATGFMSNRGRQNVASYLALDLQLDWRKGADHFESLLLDYDVCSNWGN--WVAAAGLTGGRVNRFNIAKQSKDYDPDGKYLRHWLPELKDVP 503
                 445666777789*********87665511111567899***********************************98876655443222238*************************************999822445667779*****9888877245788888866554455666665555125678******9987541112221223578888**********986435679*******95678999****************986554.5567777655443...341469*******98888888888888888888899*************************************************************************996..67999*********************************9986 PP

>> TIGR02766  crypt_chrom_pln: cryptochrome, plant family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.0   3.6e-07   0.00037      12     165 ..      60     228 ..      56     242 .. 0.75
   2 ?   -1.8   0.0       0.2   2.1e+02     303     331 ..     282     311 ..     276     328 .. 0.73
   3 !  101.9   0.3   7.5e-33   7.7e-30     315     464 ..     386     532 ..     380     537 .. 0.92

  Alignments for each domain:
  == domain 1    score: 17.2 bits;  conditional E-value: 3.6e-07
   TIGR02766  12 vednpala.aaareg..evlpvfvwapeeegqf.....ypgrvsrwwlkqslahldqslkslgaklvl..krsedtvaalldvvkstg...atklvfnhlydpvslvrdhkvkeklaakgisvqsfnadllyepwev..vdekgkaftsfaaywekclelpidaspllp 165
                 v+dnp l+ aaa++g  evlpv+ + p   g+        g     +l +s+ +l + l++lg++l++   r ed +  ++    + g    t+l+++       l  d  ++  l a  +  +++ + lly   ++    +      +f+++ +k+      + pl+p
  MMETSP1137-20121227|9103_1  60 VHDNPILThAAAQAGdkEVLPVYCFDPRSYGTTafgspKTGALRAKFLLESVLDLRAKLRELGSDLLVgyGRPEDIIPRIVTAAAEDGvpaNTELLWQEQVTSEELTVDRALRSALPAGTVEARAMSSGLLYAKQDLpfQPDLKDMPDVFTPFRNKVEAKCSIPKPLPP 228
                 89****973566777779*********99987511211346667789999**************998733589999*99999998877333589*****9999*****************************8776521333444445566665555444444455555 PP

  == domain 2    score: -1.8 bits;  conditional E-value: 0.2
   TIGR02766 303 eksllahlkffpwkvde.ekfkawrqgrtg 331
                 e   l++lk++ w+ d  + +   r+g+ g
  MMETSP1137-20121227|9103_1 282 ETVALSRLKHYLWDKDClKSYFETRNGMLG 311
                 667799*******88752233345666655 PP

  == domain 3    score: 101.9 bits;  conditional E-value: 7.5e-33
   TIGR02766 315 wkvdeekfkawrqgrtgyplvdagmrelwatgwlhdrirvvvssfavkvlllpwkwgmkyfwdtlldadlesdilgwqyisgslpdgreldrldnpelegakydpegeyvrrwlpelarlptewihhpwdapesvlkaagvelgsnypkp 464
                 w+ +   +  w++g+tg plvda mrel atg++ +r r  v+s++   l+l w+ g  +f   lld d+ s+   w   +g l  g  ++r+ n + + + ydp+g+y+r+wlpel  +p+  ih pw   +s  +   v +g +yp p
  MMETSP1137-20121227|9103_1 386 WVDHAPTLERWKEGKTGMPLVDANMRELAATGFMSNRGRQNVASYLALDLQLDWRKGADHFESLLLDYDVCSNWGNWVAAAG-LT-GGRVNRF-NIAKQSKDYDPDGKYLRHWLPELKDVPAPQIHEPWTMSKSDQEKYNVRIGLDYPEP 532
                 5555667899**************************************************************9999987776.44.5568998.567799************************************************98 PP

>> TIGR00591  phr2: deoxyribodipyrimidine photolyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.1   0.0   0.00062      0.64      34     149 ..      60     183 ..      56     190 .. 0.63
   2 !   15.9   0.0   1.3e-06    0.0013     209     295 ..     266     357 ..     254     371 .. 0.76

  Alignments for each domain:
  == domain 1    score: 7.1 bits;  conditional E-value: 0.00062
   TIGR00591  34 vqdnwaliyaqelalkek.lPlavvfcl....vdkf..ldatirhykfllkGlrevakelkeldipfhlllgsakevlpkfveekkaaavvtDfsplriikqwvee..vakalpkdvplvqvdah 149
                 v+dn  l +a   a  ++ lP+  +f      +  f  +++ + + kfll+ + +++ +l+el+ ++ +  g +++ +p+ v++     v ++   l +++   ee  v +al + +p   v+a 
  MMETSP1137-20121227|9103_1  60 VHDNPILTHAAAQAGDKEvLPVY-CFDPrsygTTAFgsPKTGALRAKFLLESVLDLRAKLRELGSDLLVGYGRPEDIIPRIVTAAAEDGVPANTELLWQEQVTSEEltVDRALRSALPAGTVEAR 183
                 56677776665555433303432.33211111222211333455779************************************766666555555444443333322266777777777777775 PP

  == domain 2    score: 15.9 bits;  conditional E-value: 1.3e-06
   TIGR00591 209 lkvdrevkevelakpGtkaglevleefiskr..LklfeekrndPnk.dalsnlsPylhfGqlsaqrvalevkrarsa..esesvdefleeli 295
                 ++v ++ + v  +++G+  +l+ l++++  +  Lk + e+rn     d  s+++P+l +G ls++ va e  r  +a  +++s    + eli
  MMETSP1137-20121227|9103_1 266 FSVAADPRGVMPFHGGETVALSRLKHYLWDKdcLKSYFETRNGMLGaDYSSKFAPWLAHGCLSPRLVASECARYETArvKNKSTYWLVFELI 357
                 55555566677889************9966555*********976439999******************99987654113344444555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (590 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        47  (0.0114578); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.42u 0.12s 00:00:00.54 Elapsed: 00:00:00.60
# Mc/sec: 1297.89
//
Query:       MMETSP1137-20121227|9104_1  [L=303]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
          4    3.6  27.8        5.2    3.2  19.3    1.2  1  TIGR01642 U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor


Domain annotation for each model (and alignments):
>> TIGR01642  U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2  19.3    0.0013       5.2      24     126 ..     191     300 ..     165     303 .] 0.69

  Alignments for each domain:
  == domain 1    score: 3.2 bits;  conditional E-value: 0.0013
   TIGR01642  24 sRkRsrdrsrdRdRdrrdrrrsrrkd...sRdRdrrrydsrsissleedsrrrSRdrirrrsr....sssseskerrrsrkrsssnekkkddkkrslwdvkppkyeavta 126
                  R Rs  +s+dR+R ++++r+s++ d   +++R ++r+++++ +s ee  +rr+ ++ +rr      ss +  +  ++s ++s s+++kkd  + s  +    +++ +++
  MMETSP1137-20121227|9104_1 191 GRARSVLESEDRERRKKSKRKSKKSDfkaEKKRAKKRKKKHRSESKEERRQRRAAKPAKRRCVeacmSSAQSDQPVEESDSSSDSRSHKKDLSEDSDLNKLGCDWDEIDD 300
                 46666667777777777666666544333888888888888888888888888888888875411113444455567777888888888888888888888888988886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (303 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       297  (0.0724037); expected 82.0 (0.02)
Passed bias filter:                      121  (0.0294978); expected 82.0 (0.02)
Passed Vit filter:                        19  (0.00463189); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.16s 00:00:00.53 Elapsed: 00:00:00.56
# Mc/sec: 714.16
//
Query:       MMETSP1137-20121227|9106_1  [L=343]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.8e-20   71.2  12.0    1.1e-19   68.7   8.3    2.3  1  TIGR01297 CDF: cation diffusion facilitator family transporter


Domain annotation for each model (and alignments):
>> TIGR01297  CDF: cation diffusion facilitator family transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.7   8.3   2.6e-23   1.1e-19       4     191 ..      80     265 ..      78     307 .. 0.90

  Alignments for each domain:
  == domain 1    score: 68.7 bits;  conditional E-value: 2.6e-23
   TIGR01297   4 allialllnlllmvveivggllagSlAllaDaaHslsDvaaliiallalrisrkpaderhpfGyg.raeiLaallnalflvvvalfilyeAierlinpeeeiegslmlivaivglivnlilalllkraGkkesslalraaalhvlsDllsSvgvligvlliyfggwkiaDpiaslvisvlilktafrll 191
                  ++++   n+ll+++++v+gl+a S +l+aDaaHsl D++a ++ l+a +  + p  +  + G   ++   +a l+++ ++ +   +  +A++ + +++ +    + l+va+v + +++ l++l+  +Gk+ +s+ l+a+a h++sD+lsS+++ +g+++  +g + +++p+a +v++ l+l++++++l
  MMETSP1137-20121227|9106_1  80 MAIVSGGSNILLSFLKLVVGLVARSPSLIADAAHSLGDLVADGLCLIAAY--SPPLEQLCTLGIAaMLLSTGASLVSFSFFEIRSALQSHALRGVASAPLQLASLVPLFVALVCVGAKESLYRLTYAVGKRYGSQSLIANAHHHRSDMLSSIAAALGIVGTLAG-VPWLEPLAVFVVGGLVLRVGLQTL 265
                 67788889**************************************9976..56778999***85256677889999999999999***********88788888999******************************************************99.*******************99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (343 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       104  (0.0253535); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.30u 0.17s 00:00:00.47 Elapsed: 00:00:00.30
# Mc/sec: 1509.08
//
Query:       MMETSP1137-20121227|9107_1  [L=555]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (555 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        84  (0.0204778); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.15s 00:00:00.49 Elapsed: 00:00:00.42
# Mc/sec: 1744.14
//
Query:       MMETSP1137-20121227|9108_1  [L=179]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.6e-06   23.6   0.0    4.1e-05   21.2   0.0    1.8  1  TIGR03137 AhpC: peroxiredoxin


Domain annotation for each model (and alignments):
>> TIGR03137  AhpC: peroxiredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.0   9.9e-09   4.1e-05      28     141 ..      20     124 ..      12     137 .. 0.83

  Alignments for each domain:
  == domain 1    score: 21.2 bits;  conditional E-value: 9.9e-09
   TIGR03137  28 dlkGkwsvlvfypadftfvcpteledladkyeelkelgvevysvstdthfvhkawhdeseaigkikypllgdptkkltrnfdvlieeaglaergtfvidpeGvikvvevtaegi 141
                  +k + +v++fy ad +  c te++ ++ +   +++ g  v  v +    v    + ++        +l++d+ +++ +++++ ++   l  r t+++d eG++  v +++ + 
  MMETSP1137-20121227|9108_1  20 GIKNRPAVVFFYGADDAPTCSTEVDAFNASRIXFRRKGFSVVGVRSAEGAV----RSST-----SALTLVADEGNEIRNELGIKKDFGFLPGRETYLVDREGTVVFVHQNQFNA 124
                 5788899*********************************99997654333....3333.....34689*****************999***************9998876555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (179 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        64  (0.0156021); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.19u 0.13s 00:00:00.32 Elapsed: 00:00:00.37
# Mc/sec: 638.54
//
Query:       MMETSP1137-20121227|9109_1  [L=331]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0016   16.0   0.1     0.0036   14.9   0.0    1.5  1  TIGR03690 20S_bact_beta: proteasome, beta subunit


Domain annotation for each model (and alignments):
>> TIGR03690  20S_bact_beta: proteasome, beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   8.8e-07    0.0036     160     191 ..     189     220 ..     179     226 .. 0.87

  Alignments for each domain:
  == domain 1    score: 14.9 bits;  conditional E-value: 8.8e-07
   TIGR03690 160 eedavrvavealydaadddsatGGpdlvrkiy 191
                  ++a++  v+a+y aa+dd atGG  l+ ++y
  MMETSP1137-20121227|9109_1 189 PSRATNNYVQAIYAAAEDDNATGGARLLGHVY 220
                 56788999****************99998887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (331 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       175  (0.0426621); expected 82.0 (0.02)
Passed bias filter:                      146  (0.0355924); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.12u 0.30s 00:00:00.42 Elapsed: 00:00:00.48
# Mc/sec: 910.17
//
Query:       MMETSP1137-20121227|9110_1  [L=231]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (231 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        59  (0.0143832); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.24s 00:00:00.36 Elapsed: 00:00:00.41
# Mc/sec: 743.65
//
Query:       MMETSP1137-20121227|9111_1  [L=119]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (119 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        90  (0.0219405); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.23s 00:00:00.32 Elapsed: 00:00:00.40
# Mc/sec: 392.67
//
Query:       MMETSP1137-20121227|9112_1  [L=255]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0011   16.4   0.0     0.0027   15.2   0.0    1.5  1  TIGR01262 maiA: maleylacetoacetate isomerase


Domain annotation for each model (and alignments):
>> TIGR01262  maiA: maleylacetoacetate isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0   6.6e-07    0.0027      39     200 ..      72     234 ..      68     239 .. 0.79

  Alignments for each domain:
  == domain 1    score: 15.2 bits;  conditional E-value: 6.6e-07
   TIGR01262  39 kkeefkalNPqelvPtLkide.gevltqSlAiieyLeetypepaLlpkdpakrarvralalliacdihPlqNlrvlqlleeklgvdeeekkewlkhwiekGlaalEellkekagafcvGdevtladvcLvpqvynAerf......evdlaqyPtlkrieealaelpafq 200
                  k++ ++ NP+ ++P +++ e + v+tqS A+  yL ++++   L  + p + ar+ ++al+ + d++    + v+ +  +++++ ++  +++l +++   ++ +E  + +    f +G++vtl d  L   + + e +      +  la+yP+l++  +++ elp+++
  MMETSP1137-20121227|9112_1  72 DKPALAEKNPMVNLPYVHDTEnDLVVTQSTAVYLYLGRKFN---LCGSTPVELARA-EMALAQSLDLRDALIKVVYPFTGTTAETYPKVLEDHLTKVVPGHYTKFEGFIGD--LPFIAGESVTLGDFHLWEMLDQHELMaksgghASPLAAYPKLSAFYARFXELPQLK 234
                 5788899********98765527899************998...778888887776.567888889998888888888888888888888899999998889999999987..57999999999999998877665533111111456889999999988888888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (255 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        74  (0.01804); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.09u 0.26s 00:00:00.35 Elapsed: 00:00:00.35
# Mc/sec: 961.63
//
Query:       MMETSP1137-20121227|9113_1  [L=378]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.2e-19   65.9   1.0    3.3e-16   57.5   0.0    2.7  3  TIGR01289 LPOR: light-dependent protochlorophyllide reductase
    4.8e-16   57.0   0.0    8.3e-16   56.2   0.0    1.3  1  TIGR01830 3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase
    1.4e-15   55.1   0.0    2.3e-15   54.4   0.0    1.4  1  TIGR01963 PHB_DH: 3-hydroxybutyrate dehydrogenase
    6.4e-13   45.8   0.0    8.9e-13   45.3   0.0    1.1  1  TIGR02632 RhaD_aldol-ADH: rhamnulose-1-phosphate aldolase/alcohol dehydrogenase
      4e-12   43.9   0.0    5.5e-12   43.5   0.0    1.2  1  TIGR02415 23BDH: acetoin reductases
    4.3e-12   43.9   0.0    6.2e-12   43.4   0.0    1.2  1  TIGR01832 kduD: 2-deoxy-D-gluconate 3-dehydrogenase
    5.1e-10   37.2   0.0    7.8e-10   36.6   0.0    1.2  1  TIGR01829 AcAcCoA_reduct: acetoacetyl-CoA reductase
    1.2e-09   35.8   0.0    1.8e-09   35.2   0.0    1.2  1  TIGR01500 sepiapter_red: sepiapterin reductase
    1.2e-09   35.7   0.0    3.5e-09   34.2   0.0    1.8  1  TIGR03206 benzo_BadH: 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase
    2.5e-08   31.5   0.0    2.4e-07   28.3   0.0    2.0  1  TIGR03971 SDR_subfam_1: oxidoreductase, SDR family
    1.1e-07   29.3   0.0    4.3e-07   27.3   0.0    1.8  2  TIGR03325 BphB_TodD: cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase
    2.7e-05   21.5   0.0    6.3e-05   20.3   0.0    1.6  1  TIGR01831 fabG_rel: putative 3-oxoacyl-(acyl-carrier-protein) reductase
  ------ inclusion threshold ------
      0.022   11.7   0.1      0.034   11.1   0.0    1.2  1  TIGR02685 pter_reduc_Leis: pteridine reductase


Domain annotation for each model (and alignments):
>> TIGR01289  LPOR: light-dependent protochlorophyllide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.0   0.0       5.4   1.7e+03      31      49 ..      39      57 ..      19      59 .. 0.77
   2 !   57.5   0.0   1.1e-18   3.3e-16       5     145 ..      98     235 ..      94     303 .. 0.83
   3 ?   -2.3   0.0       1.7   5.3e+02     289     312 ..     350     373 ..     345     374 .. 0.85

  Alignments for each domain:
  == domain 1    score: -4.0 bits;  conditional E-value: 5.4
   TIGR01289 31 vvmacrdlekaekaakslg 49
                v+++cr l+k+  a   lg
  MMETSP1137-20121227|9113_1 39 VMVSCRGLLKSSLAILVLG 57
                6778999999987766666 PP

  == domain 2    score: 57.5 bits;  conditional E-value: 1.1e-18
   TIGR01289   5 tviitgassglglaaakalvekgkwhvvmacrdlek.aekaak.slglpkdsytilkldlasldsvrkfveqfresgrsldalvcnaavylpllkeplfsadgyelsvatnhlghfllsnllledlkksdekdkrliilgsvt 145
                  +i+tgassglgl  a+ l+e+    + ++ rd  k a  +a+ +  +p  s + + +++ sl+sv +  e++re   +ld +v na +  p     l s d+ e     nhl hfll + ll  l+ks+  ++r + + sv+
  MMETSP1137-20121227|9113_1  98 FAIVTGASSGLGLGVARRLAERE-ATLTVTARDTTKcAATVADiKSHVPGASVSCVSMEMLSLKSVSHAAETLREQLPTLDLFVANAGIMAPPS--LLISDDNLEQQFQVNHLSHFLLLQRLLPSLRKSS--SPRFVAVSSVA 235
                 589*******************9.66666778888724556653567999***************************************99964..689****************************986..68999888875 PP

  == domain 3    score: -2.3 bits;  conditional E-value: 1.7
   TIGR01289 289 qelseevsddekakklwelseklv 312
                 ++ s ++ +++ a+ lwe s+ l+
  MMETSP1137-20121227|9113_1 350 RKTSRQAENATVAEELWEWSAALI 373
                 677899999999******999886 PP

>> TIGR01830  3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.2   0.0   2.6e-18   8.3e-16       1     137 [.      99     235 ..      99     241 .. 0.91

  Alignments for each domain:
  == domain 1    score: 56.2 bits;  conditional E-value: 2.6e-18
   TIGR01830   1 alvtGasrgiGkaiakklakegakvviterskeekaeelaeelke..agvkaaavkldvsdeeevkelveeveeelgeidilvnnAGitrDklllrmkeedwdevikvnLkgvfnvtkavlkkmikkrsGriinissvv 137
                 a+vtGas g+G  +a++la++ a++++t r  ++k++++++++k+   g+++++v++++ + ++v+++ e++ e+l ++d+ v+nAGi     l  +++++ ++  +vn  + f + ++ l ++ k+ s r + +ssv+
  MMETSP1137-20121227|9113_1  99 AIVTGASSGLGLGVARRLAEREATLTVTARD-TTKCAATVADIKShvPGASVSCVSMEMLSLKSVSHAAETLREQLPTLDLFVANAGIMAPPSL-LISDDNLEQQFQVNHLSHFLLLQRLLPSLRKSSSPRFVAVSSVA 235
                 79**************************765.5666777777776346999*************************************997655.5899**************************************97 PP

>> TIGR01963  PHB_DH: 3-hydroxybutyrate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.4   0.0   7.4e-18   2.3e-15       2     187 ..      97     297 ..      96     304 .. 0.78

  Alignments for each domain:
  == domain 1    score: 54.4 bits;  conditional E-value: 7.4e-18
   TIGR01963   2 kvalvtGaasGiglaiakelaaaGakvvvndleeeaaeaaak..eleeaggevlalkadvtkeeeiadlieavaaefgsldiLvnnAGiqhvapieefptekfekiiavnltsafhtiraalpimkkqgwGriiniasvhglvasaf....KsaYvaaK....HglvGltKv....lAlEvA..etgitanaicPgyvrtpL 187
                 k a+vtGa+sG+gl++a++la+  a+++v+  ++ +++a+ +  + +  g++v  +++++ + +++++  e++ +++ +ld+ v nAGi     +     ++ e+  +vn  s f + +  lp ++k+   r + ++sv    a ++     sa + aK     +  G +K     lA+E    e +i a+a+ Pg v+ +L
  MMETSP1137-20121227|9113_1  97 KFAIVTGASSGLGLGVARRLAEREATLTVTARDTTKCAATVAdiKSHVPGASVSCVSMEMLSLKSVSHAAETLREQLPTLDLFVANAGIMAPPSL-LISDDNLEQQFQVNHLSHFLLLQRLLPSLRKSSSPRFVAVSSVAHWFAPPQpllsVSALNEAKaydpFTWYGWSKLcnvyLAKELHrrEPQISAHAVHPGGVQGKL 297
                 789*******************99999998888666666555005556699**************************************765544.56789999999********************************999998862222466776763333356677665222235554311345777777777776666 PP

>> TIGR02632  RhaD_aldol-ADH: rhamnulose-1-phosphate aldolase/alcohol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.3   0.0   2.8e-15   8.9e-13     411     561 ..      93     241 ..      88     258 .. 0.88

  Alignments for each domain:
  == domain 1    score: 45.3 bits;  conditional E-value: 2.8e-15
   TIGR02632 411 elarrvalvtGgasGiGrevarrlvdeGahvvladldaeaaeavaaelvdkfGadkavalkldvtdeeavkaafaevalayGGvdivvnnaGiavskpleeteleeWdlnldilatGyflvareaarllrkqglggnlvfiasknavvakk 561
                 +l ++ a+vtG++sG+G  varrl+++ a + ++  d+ + +a+ a+++++     + ++ +++ + ++v  a +    +   +d+ v+naGi+ ++p+   ++++ + +++++   +fl+ ++    lrk + +  +v ++s+   +a +
  MMETSP1137-20121227|9113_1  93 SLKGKFAIVTGASSGLGLGVARRLAEREATLTVTARDTTKCAATVADIKSHVPGASVSCVSMEMLSLKSVSHAAETLREQLPTLDLFVANAGIM-APPSLLISDDNLEQQFQVNHLSHFLLLQRLLPSLRKSSSP-RFVAVSSVAHWFAPP 241
                 678999******************************************98777777778*********************************96.6788889999***************999999888887655.577788877777765 PP

>> TIGR02415  23BDH: acetoin reductases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.5   0.0   1.7e-14   5.5e-12       1     117 [.      97     214 ..      97     241 .. 0.86

  Alignments for each domain:
  == domain 1    score: 43.5 bits;  conditional E-value: 1.7e-14
   TIGR02415   1 kvalvtGaaqGiGkaiaerLakdGfavavadlneetaketakelkek..gtkavavkldvsdkseveeaveqaveklGeldvlvnnaGvalvtpileiteeeleklynvnvkgvlfGiq 117
                 k a+vtGa+ G+G ++a+rLa+    ++v+  +  + ++t+ ++k++  g     v++++ + ++v +a e+ +e+l +ld++v naG+ +  ++l i++++le++++vn  + +  +q
  MMETSP1137-20121227|9113_1  97 KFAIVTGASSGLGLGVARRLAEREATLTVTARDTTKCAATVADIKSHvpGASVSCVSMEMLSLKSVSHAAETLREQLPTLDLFVANAGIMAPPSLL-ISDDNLEQQFQVNHLSHFLLLQ 214
                 78*******************99988888888888888888888876336777789999999***************************9877765.899**********888776666 PP

>> TIGR01832  kduD: 2-deoxy-D-gluconate 3-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.4   0.0     2e-14   6.2e-12       2     140 ..      93     233 ..      92     239 .. 0.83

  Alignments for each domain:
  == domain 1    score: 43.4 bits;  conditional E-value: 2e-14
   TIGR01832   2 sleGkvalvtGantGlGqgiavglaeaGadivgvg..iselsetqekveal..GrkflslkadladeeaakalvdeaveeagkidilvnnaGiirredavefsekdwddvlnvnlkavfllsqavakkllkqGrkgkiinias 140
                 sl+Gk a+vtGa++GlG g+a  lae  a +  ++  +++   t + +++   G+ ++ +++++ + +++++  ++  e+   +d +v naGi+    ++ +s+ + ++ ++vn  + fll q +   l k  ++ + + ++s
  MMETSP1137-20121227|9113_1  93 SLKGKFAIVTGASSGLGLGVARRLAEREATLTVTArdTTKCAATVADIKSHvpGASVSCVSMEMLSLKSVSHAAETLREQLPTLDLFVANAGIMAP-PSLLISDDNLEQQFQVNHLSHFLLLQRLLPSLRK-SSSPRFVAVSS 233
                 79***********************977765544412677778888887655599*************************************9976.57789*******************9987655433.33566666555 PP

>> TIGR01829  AcAcCoA_reduct: acetoacetyl-CoA reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.6   0.0   2.5e-12   7.8e-10       1     138 [.      97     234 ..      97     237 .. 0.93

  Alignments for each domain:
  == domain 1    score: 36.6 bits;  conditional E-value: 2.5e-12
   TIGR01829   1 rvalvtGglgGiGtaickrlakdGykvvanvapneerakewlq.ekevegfdvavvkadvssfeeakaavakveaelGpvdvlvnnaGitrdavfkkmtkeqWeevidtnlnsvfnvtrpviegmlergfGriinissv 138
                 + a+vtG++ G+G  +++rla+   ++  + +  +++a+ +++ +++v g  v  v++++ s ++ ++a + ++++l ++d++v naGi     +  ++ ++ e+  ++n  s f + ++++ ++++ +  r + +ssv
  MMETSP1137-20121227|9113_1  97 KFAIVTGASSGLGLGVARRLAEREATLTVTARDTTKCAATVADiKSHVPGASVSCVSMEMLSLKSVSHAAETLREQLPTLDLFVANAGIMAPPSLL-ISDDNLEQQFQVNHLSHFLLLQRLLPSLRKSSSPRFVAVSSV 234
                 679*******************999999999998888887776367899****************************************9988775.788999***********************************9 PP

>> TIGR01500  sepiapter_red: sepiapterin reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.2   0.0   5.7e-12   1.8e-09       2     152 ..      98     234 ..      97     258 .. 0.85

  Alignments for each domain:
  == domain 1    score: 35.2 bits;  conditional E-value: 5.7e-12
   TIGR01500   2 lllvtGasrGfGrelaqelakrlkaegsvlvLlaRndeaLkeskaeieaevsalsvdlvsldleaakdvedllkaleesikkeeyerillinnaGtlgdvskrekelsDsknvqkyydsnvtslvvltsellkklkelqglektvvnlssL 152
                 +++vtGas G+G  +a++la+    +  +l++ aR+ +    + a+i+++v++ sv  vs+++ + k v +  ++l+e+    +    l++ naG +   s       D +n++++++ n  s   l   ll  l++  ++++  v +ss+
  MMETSP1137-20121227|9113_1  98 FAIVTGASSGLGLGVARRLAE----REATLTVTARDTTKCAATVADIKSHVPGASVSCVSMEMLSLKSVSHAAETLREQLPTLD----LFVANAGIMAPPSLLIS---D-DNLEQQFQVNHLSHFLLLQRLLPSLRK-SSSPRF-VAVSSV 234
                 589*****************9....567899********************************************999887655....699****9999887655...4.899**********99999999999993.355554.455555 PP

>> TIGR03206  benzo_BadH: 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.2   0.0   1.1e-11   3.5e-09       1     139 [.      94     233 ..      94     317 .. 0.81

  Alignments for each domain:
  == domain 1    score: 34.2 bits;  conditional E-value: 1.1e-11
   TIGR03206   1 lkdkvaivtgggggiggaicrrfaeegakvavldlna.eaaekvaaairek.ggkaeavavditdrasvdaavaaaeealgpvdvlvnnagwdvlkpflktekaewerliainltgalymhhavlkgmverkagrivnias 139
                 lk+k aivtg + g+g  + rr+ae  a ++v   ++ ++a +va+   +  g +  +v++++ + +sv  a  + +e l   d++v nag     ++l +++ + e+   +n    + +   +l+ + +  + r v ++s
  MMETSP1137-20121227|9113_1  94 LKGKFAIVTGASSGLGLGVARRLAEREATLTVTARDTtKCAATVADIKSHVpGASVSCVSMEMLSLKSVSHAAETLREQLPTLDLFVANAGIMAPPSLLISDD-NLEQQFQVNHLSHFLLLQRLLPSLRKSSSPRFVAVSS 233
                 799*************************9999876541566777765544426678899********************************866555555444.4455556666666666666666666666666666666 PP

>> TIGR03971  SDR_subfam_1: oxidoreductase, SDR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.3   0.0   7.6e-10   2.4e-07       1     218 [.      94     312 ..      94     338 .. 0.76

  Alignments for each domain:
  == domain 1    score: 28.3 bits;  conditional E-value: 7.6e-10
   TIGR03971   1 leGkvalitGaarGqGraeavrlaaeGadiiaidlceplsdvvtypaatredldetaklvealGrkvlarkadvrkleelravveegveefGrldvvvanaGvlsygrafelseeqWdtvldvnlkGvWktvkavvPalierknGGsiiivssva..........glkalpglahya.aakhGlvgltkt.lanela..eygirvnsihPtsvdtamiepeamrelfakree 218
                 l+Gk a++tGa+ G G   a rla+  a + +       ++  t +aat +d++  +      G  v +   ++ +l+ + ++ e   e++  ld+ vanaG+++  ++  +s+++ ++  +vn    +  ++  +P l         + vssva          ++ al+    y   + +G   l +  la+el   e +i   ++hP +v+ ++++  a+ e + +r e
  MMETSP1137-20121227|9113_1  94 LKGKFAIVTGASSGLGLGVARRLAEREATLTVT------ARDTTKCAATVADIKSHV-----PGASVSCVSMEMLSLKSVSHAAETLREQLPTLDLFVANAGIMAP-PSLLISDDNLEQQFQVNHLSHFLLLQRLLPSLRKSS-SPRFVAVSSVAhwfappqpllSVSALNEAKAYDpFTWYGWSKLCNVyLAKELHrrEPQISAHAVHPGGVQGKLLRFAAAPEWLIQRFE 312
                 79***********************99976432......2334579******99876.....57889999999******************************975.67789*************************987665.7888999999833333333333555555555541345677777764477777522557888889999999888887777776666555 PP

>> TIGR03325  BphB_TodD: cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.3   0.0   1.4e-09   4.3e-07       3     145 ..      94     235 ..      92     251 .. 0.82
   2 ?   -0.7   0.0      0.46   1.4e+02     158     191 ..     265     297 ..     257     331 .. 0.82

  Alignments for each domain:
  == domain 1    score: 27.3 bits;  conditional E-value: 1.4e-09
   TIGR03325   3 lkdevvlvtggasglgralvdrfvaegarvavld....ksaagleeleaah.gdkvvgvegdvrllddhkeavarcveafgkldtlipnagiwdystalvdipddrideafdevfeinvkgyllavkaalpalvasrgsviftvsnag 145
                 lk++ ++vtg +sglg  +  r     a ++v      k aa + +++++  g+ v +v+ ++ +l++  +a++   e++  ld +++nagi      l  i dd ++    + f++n  +++l  +  lp l +s      +vs   
  MMETSP1137-20121227|9113_1  94 LKGKFAIVTGASSGLGLGVARRLAEREATLTVTArdttKCAATVADIKSHVpGASVSCVSMEMLSLKSVSHAAETLREQLPTLDLFVANAGIMAPPSLL--ISDDNLE----QQFQVNHLSHFLLLQRLLPSLRKSSSPRFVAVSSVA 235
                 88999*************9999999999988875112256788999998762566778999*******************************9766655..6677665....567899999999999999999999888877777655 PP

  == domain 2    score: -0.7 bits;  conditional E-value: 0.46
   TIGR03325 158 akhavvglvkelayelapyvrvngvapgglstdl 191
                 +k   v l kel +   p++    v pgg++  l
  MMETSP1137-20121227|9113_1 265 SKLCNVYLAKEL-HRREPQISAHAVHPGGVQGKL 297
                 566667777777.6778************98554 PP

>> TIGR01831  fabG_rel: putative 3-oxoacyl-(acyl-carrier-protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   0.0     2e-07   6.3e-05       2     138 ..     100     235 ..      99     239 .. 0.88

  Alignments for each domain:
  == domain 1    score: 20.3 bits;  conditional E-value: 2e-07
   TIGR01831   2 lvtgasrgigraialklaadgfeiavhyrsdradaeesvaairaq..ggnarllkfdvadrvavrevleadiaehgayygvvlnagiardaafpalseedwdavietnldgfynvihplvmpmirarkggriitlasvs 138
                 +vtgas g+g  +a +la     ++v   +d+++  ++va+i+++  g++++ +++++   ++v ++ e+  ++  +    v nagi    ++  +s+++ +  ++ n  + + +++  ++p +r     r ++++sv+
  MMETSP1137-20121227|9113_1 100 IVTGASSGLGLGVARRLAEREATLTVTA-RDTTKCAATVADIKSHvpGASVSCVSMEMLSLKSVSHAAETLREQLPTLDLFVANAGIMAPPSL-LISDDNLEQQFQVNHLSHFLLLQR-LLPSLRKSSSPRFVAVSSVA 235
                 79*******************9999976.5778888999999875449999*******************999**************876665.57999*******999999988886.57999999999***999996 PP

>> TIGR02685  pter_reduc_Leis: pteridine reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00011     0.034       4     106 ..      99     197 ..      96     206 .. 0.79

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 0.00011
   TIGR02685   4 alvtGaakriGrsiavklhqeGyrvvlhyrrsaeaasslaaelnaeransavvvkadlsnsasllssceeiidacfrafGrcdvlvnnasafyptpllrgdae 106
                 a+vtGa+  +G  +a +l ++  ++ +  r + + a+++a ++ ++ ++++v + +        l+s ++  ++   +    d++v na    p  ll  d++
  MMETSP1137-20121227|9113_1  99 AIVTGASSGLGLGVARRLAEREATLTVTARDTTKCAATVA-DIKSHVPGASVSCVSMEM---LSLKSVSHAAETLREQLPTLDLFVANAGIMAPPSLLISDDN 197
                 9****************************99999998865.678888999998865333...33445555566666778888999999999988888877764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (378 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       143  (0.034861); expected 82.0 (0.02)
Passed bias filter:                      122  (0.0297416); expected 82.0 (0.02)
Passed Vit filter:                        24  (0.0058508); expected 4.1 (0.001)
Passed Fwd filter:                        13  (0.00316919); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.33u 0.22s 00:00:00.55 Elapsed: 00:00:00.50
# Mc/sec: 997.84
//
Query:       MMETSP1137-20121227|9115_1  [L=587]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   4.1e-135  448.4   0.5   5.6e-135  448.0   0.4    1.0  1  TIGR01242 26Sp45: 26S proteasome subunit P45 family
      2e-81  272.2   0.0    2.8e-81  271.7   0.0    1.1  1  TIGR01243 CDC48: AAA family ATPase, CDC48 subfamily
    1.1e-73  246.5   0.1    1.6e-73  246.0   0.0    1.1  1  TIGR01241 FtsH_fam: ATP-dependent metallopeptidase HflB
    2.7e-63  212.2   3.6    3.3e-60  202.1   0.4    2.1  2  TIGR03689 pup_AAA: proteasome ATPase
    1.7e-06   25.0   0.3     0.0035   14.2   0.0    2.2  2  TIGR00390 hslU: ATP-dependent protease HslVU, ATPase subunit
    6.2e-06   23.3   0.0    1.7e-05   21.8   0.0    1.7  1  TIGR00635 ruvB: Holliday junction DNA helicase RuvB
    1.2e-05   22.1   0.2      0.002   14.9   0.0    2.3  2  TIGR02928 TIGR02928: orc1/cdc6 family replication initiation protein
    1.3e-05   21.7   0.0      2e-05   21.2   0.0    1.2  1  TIGR03922 T7SS_EccA: type VII secretion AAA-ATPase EccA
    5.3e-05   19.7   0.4    9.1e-05   18.9   0.0    1.5  2  TIGR00763 lon: ATP-dependent protease La
    0.00057   16.8   0.0     0.0011   15.9   0.0    1.3  1  TIGR00382 clpX: ATP-dependent Clp protease, ATP-binding subunit ClpX
      0.003   14.0   0.0     0.0063   12.9   0.0    1.4  1  TIGR00764 lon_rel: putative ATP-dependent protease
     0.0066   12.9   0.1      0.011   12.2   0.1    1.2  1  TIGR00368 TIGR00368: Mg chelatase-like protein
     0.0084   12.1   1.7      0.015   11.3   0.0    2.0  3  TIGR02639 ClpA: ATP-dependent Clp protease ATP-binding subunit ClpA
     0.0093   12.9   0.0      0.018   12.0   0.0    1.4  1  TIGR02881 spore_V_K: stage V sporulation protein K
  ------ inclusion threshold ------
       0.01   13.1   0.1      0.023   12.0   0.0    1.5  1  TIGR02640 gas_vesic_GvpN: gas vesicle protein GvpN
      0.013   12.9   0.0      0.031   11.7   0.0    1.6  1  TIGR00678 holB: DNA polymerase III, delta' subunit
      0.014   12.8   0.0      0.027   11.8   0.0    1.5  1  TIGR03420 DnaA_homol_Hda: DnaA regulatory inactivator Hda
      0.021   12.4   1.2       0.15    9.6   0.0    2.4  3  TIGR01313 therm_gnt_kin: carbohydrate kinase, thermoresistant glucokinase family
      0.027   10.8   0.0      0.041   10.2   0.0    1.2  1  TIGR02903 spore_lon_C: ATP-dependent protease, Lon family
       0.03   10.8   0.1      0.057    9.8   0.0    1.4  1  TIGR02902 spore_lonB: ATP-dependent protease LonB


Domain annotation for each model (and alignments):
>> TIGR01242  26Sp45: 26S proteasome subunit P45 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  448.0   0.4  2.7e-137  5.6e-135       3     358 ..     100     455 ..      98     459 .. 0.99

  Alignments for each domain:
  == domain 1    score: 448.0 bits;  conditional E-value: 2.7e-137
   TIGR01242   3 elkekirkledekkllekekirlereverlrselerlrsppllvavvvevlddervvvksstGpkfvvnvskfidrkelkpGarvalnqrtlaivdvlptekdplvkaleveerpevsyediGGlekqlreireavelplkkpelfeevGieppkGvllyGppGtGktllakavaeetnatfirvvgselvkkyiGeGarlvrevfklakekapsiifideidaiaakrldsstsGdrevqrtllqllaeldGfdprgnvkviaatnrldildpallrpGrfdrlievplpdleGrleilkihtrkmklaedvdleelaklteGasGadlkaivteaGmfaireerdkvtmedflk 358
                 +l++++  le + + +++e  +l+re+ r ++e++r++s pl+++  +e++d+++ +v s+tG ++ v++ + i+r+ lkp + val++++ a+vdvlp e d  +  l  +erp+vsy diGG + q +e+reavelpl + +l++++Gi+pp+GvllyGppGtGkt+lakava++t a+firvvgse+v+ky+GeG r+vr+vf+la+e ap+iifide+daia+kr d++t+ drevqr l++ll+++dGfd   nvkvi  tnr d ldpallrpGr+dr ie p+p  + ++ i+++ t km+l++dvdle+     e +sGa++  iv eaGm a+r++r +v  +df k
  MMETSP1137-20121227|9115_1 100 SLQRQLEFLEIQEEYIKDEMHNLKRELVRAKEEVKRIQSVPLVIGQFLEIIDHNHGIVSSTTGSNYYVRILSTINREVLKPSSSVALHRHSNAVVDVLPPEADSSISMLASHERPDVSYSDIGGCDIQKQEMREAVELPLTHFDLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTASFIRVVGSEFVQKYLGEGPRMVRDVFRLARENAPAIIFIDEVDAIATKRFDAQTGADREVQRILMELLTQMDGFDQSVNVKVIMCTNRADTLDPALLRPGRLDRKIEFPMPGRREKRLIFQVLTAKMNLSDDVDLEDYVSRPEKISGAEISCIVQEAGMQAVRNNRYVVLPKDFEK 455
                 678889999********************************************************************************************************************************************************************************************************************************************************************************************************************************************************987 PP

>> TIGR01243  CDC48: AAA family ATPase, CDC48 subfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  271.7   0.0   1.4e-83   2.8e-81     445     686 ..     211     454 ..     170     475 .. 0.87

  Alignments for each domain:
  == domain 1    score: 271.7 bits;  conditional E-value: 1.4e-83
   TIGR01243 445 vevpnvkwediggleevkqelreavewplkakevfeklgirppkgvllfgppgtgktllakavatesganfiavrgpeilskwvgesekaireifrkarqaapaiifldeidaiapargadlsea..vtdrivnqllteldgleensdvvviaatnrpdildpallrpgrldrlilvpapdeearleifkihtrslplaedvdleelakktegytgadieavvreaalaalresvksvakekle 686
                  e p+v ++digg +  kqe+reave pl + ++++++gi pp+gvll+gppgtgkt+lakava  + a fi v g e + k++ge  + +r++fr ar+ apaiif+de+daia +r   ++ a    +ri+ +llt++dg++++ +v vi  tnr d ldpallrpgrldr i  p+p ++ +  if++ t +++l++dvdle+   + e  +ga+i  +v+ea ++a+r+    v  + +e
  MMETSP1137-20121227|9115_1 211 HERPDVSYSDIGGCDIQKQEMREAVELPLTHFDLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTASFIRVVGSEFVQKYLGEGPRMVRDVFRLARENAPAIIFIDEVDAIATKRFDAQTGAdrEVQRILMELLTQMDGFDQSVNVKVIMCTNRADTLDPALLRPGRLDRKIEFPMPGRREKRLIFQVLTAKMNLSDDVDLEDYVSRPEKISGAEISCIVQEAGMQAVRNNRYVVLPKDFE 454
                 489*******************************************************************************************************************765543324789******************************************************************************************************876554444444 PP

>> TIGR01241  FtsH_fam: ATP-dependent metallopeptidase HflB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  246.0   0.0   7.8e-76   1.6e-73      43     292 ..     206     456 ..     190     472 .. 0.96

  Alignments for each domain:
  == domain 1    score: 246.0 bits;  conditional E-value: 7.8e-76
   TIGR01241  43 aklleeekvkvtfkdvaGideakeelveivdf.LknpkkftklGakiPkGvllvGpPGtGktLlakavaGeagvpffsisGsdfvemfvGvGasrvrDlfeqakknaPciifiDeiDavGrkrgaglgggndereqtLnqlLvemDGfetnegvivlaatnrpdvLDkaLlrPGrfDrqvvvdkPdlkgreeilkvhakkvklaeevdlkkvarrtpGfsGadlanlvneaallaarknkkevtlkeleea 292
                 + l+++e++ v+++d+ G+d +k+e+ e v+  L + + ++++G   P+Gvll+GpPGtGkt+lakava     +f+++ Gs+fv+ + G G   vrD+f  a++naP+iifiDe+Da+  kr  + +g+  e+++ L  lL++mDGf+++ +v v+  tnr+d LD+aLlrPGr+Dr++    P  ++++ i++v + k++l+++vdl++   r   +sGa+++ +v ea + a+r+n+  v  k++e+ 
  MMETSP1137-20121227|9115_1 206 SMLASHERPDVSYSDIGGCDIQKQEMREAVELpLTHFDLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTASFIRVVGSEFVQKYLGEGPRMVRDVFRLARENAPAIIFIDEVDAIATKRFDAQTGADREVQRILMELLTQMDGFDQSVNVKVIMCTNRADTLDPALLRPGRLDRKIEFPMPGRREKRLIFQVLTAKMNLSDDVDLEDYVSRPEKISGAEISCIVQEAGMQAVRNNRYVVLPKDFEKG 456
                 566778899**********************87999*****************************************************************************************************************************************************************************************************************999986 PP

>> TIGR03689  pup_AAA: proteasome ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.1   3.7e-07   7.5e-05       2     109 ..      97     205 ..      96     209 .. 0.89
   2 !  202.1   0.4   1.6e-62   3.3e-60     114     388 ..     148     412 ..     148     451 .. 0.88

  Alignments for each domain:
  == domain 1    score: 19.4 bits;  conditional E-value: 3.7e-07
   TIGR03689   2 elreleaeasslaakneklvealkaareklaelkeqldalaqPPstygtllevaadeetvevftagrkmrvavspeveaaelkaGaevrlneal.lvvealdaervGei 109
                 +++ l+++++ l  + e + + +++ +++l+++ke+++++++ P++ g +le+  +++ +  +t+g ++ v++ ++++++ lk+ ++v+l  ++  vv++l+ e+   i
  MMETSP1137-20121227|9115_1  97 KMKSLQRQLEFLEIQEEYIKDEMHNLKRELVRAKEEVKRIQSVPLVIGQFLEIIDHNHGIVSSTTGSNYYVRILSTINREVLKPSSSVALHRHSnAVVDVLPPEADSSI 205
                 578999**********************************************9888888888999*************************9765167888777666555 PP

  == domain 2    score: 202.1 bits;  conditional E-value: 1.6e-62
   TIGR03689 114 evlddgralvvdkadeervvklagalaeeklraGdsllvdlkaglaleavp...kseveelvleevPdvtyadiGGldsqieqirdavelPflhkelyreydlkpPkGvllyGPPGcGktliakavanslaekvaedgeaksyflnikGPellnkyvGeterqirliferarekaaegrPvvvffdemdslfrtrG.sGvssdve.ttvvPqllaeldGveslenviviGasnredlidPailrPGrldvkirierPdaeaaadilakyltedlPleedl 388
                 e++d+++ +v++++++++ v++ +++ +e l++  s+++ ++++  ++ +p    s+++ l+  e Pdv+y+diGG d q +++r+avelP++h +ly++ ++ pP+GvllyGPPG+Gkt++akava           ++++ f+ + G e+++ky+Ge  r +r +f  are+a    P ++f+de+d++   r  +   +d e   ++  ll+++dG ++  nv vi  +nr d +dPa+lrPGrld ki    P +++ + i++  lt+++ l++d+
  MMETSP1137-20121227|9115_1 148 EIIDHNHGIVSSTTGSNYYVRILSTINREVLKPSSSVALHRHSNAVVDVLPpeaDSSISMLASHERPDVSYSDIGGCDIQKQEMREAVELPLTHFDLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVAH----------HTTASFIRVVGSEFVQKYLGEGPRMVRDVFRLARENA----PAIIFIDEVDAIATKRFdAQTGADREvQRILMELLTQMDGFDQSVNVKVIMCTNRADTLDPALLRPGRLDRKIEFPMPGRREKRLIFQ-VLTAKMNLSDDV 412
                 688999******************************************998322456788999***************************************************************96..........45678**************************999876....9***********999952334456552358899**********************************************999888875.678888885554 PP

>> TIGR00390  hslU: ATP-dependent protease HslVU, ATPase subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.0   1.7e-05    0.0035      47     101 ..     253     305 ..     243     312 .. 0.88
   2 !    9.1   0.1   0.00059      0.12     247     282 ..     312     346 ..     305     363 .. 0.75

  Alignments for each domain:
  == domain 1    score: 14.2 bits;  conditional E-value: 1.7e-05
   TIGR00390  47 PknilmiGstGvGkteiarrlaklaeaPfikveatkftevGyvGrdveslvrdlv 101
                 P+ +l+ G+ G Gkt +a+ +a  + a fi+v  + f +  y+G     +vrd+ 
  MMETSP1137-20121227|9115_1 253 PRGVLLYGPPGTGKTMLAKAVAHHTTASFIRVVGSEFVQ-KYLGE-GPRMVRDVF 305
                 899**********************************87.58885.467888875 PP

  == domain 2    score: 9.1 bits;  conditional E-value: 0.00059
   TIGR00390 247 esGiifideidkiakkgessgadvsreGvqrdllPi 282
                    iifide+d ia+k   +++   re vqr l+ +
  MMETSP1137-20121227|9115_1 312 APAIIFIDEVDAIATKRFDAQTGADRE-VQRILMEL 346
                 4579************96666555565.77766554 PP

>> TIGR00635  ruvB: Holliday junction DNA helicase RuvB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.8   0.0   8.5e-08   1.7e-05      32      94 ..     255     325 ..     227     333 .. 0.74

  Alignments for each domain:
  == domain 1    score: 21.8 bits;  conditional E-value: 8.5e-08
   TIGR00635  32 hvllyGPPGlGkttlakiiakelgvk.lkitsgpalek.....pgDlaailtal...eegdvlfiDeihrls 94 
                  vllyGPPG Gkt lak +a+   ++ ++++ +  ++k     p+ ++  +  l   ++  ++fiDe+ +++
  MMETSP1137-20121227|9115_1 255 GVLLYGPPGTGKTMLAKAVAHHTTASfIRVVGSEFVQKylgegPR-MVRDVFRLareNAPAIIFIDEVDAIA 325
                 58******************9887663788888888874333223.44333334111445699999998876 PP

>> TIGR02928  TIGR02928: orc1/cdc6 family replication initiation protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   9.6e-06     0.002      39      63 ..     252     276 ..     241     287 .. 0.87
   2 ?    4.9   0.0      0.01       2.1     124     178 ..     307     370 ..     299     377 .. 0.80

  Alignments for each domain:
  == domain 1    score: 14.9 bits;  conditional E-value: 9.6e-06
   TIGR02928  39 rpsnvliyGktGtGKtavtkkvlke 63 
                  p+ vl+yG++GtGKt+ +k+v ++
  MMETSP1137-20121227|9115_1 252 PPRGVLLYGPPGTGKTMLAKAVAHH 276
                 6899****************99876 PP

  == domain 2    score: 4.9 bits;  conditional E-value: 0.01
   TIGR02928 124 leeredsliivLDEiDklvkkeade..........lLyeLsraeengdlekakvsvigisndlkf 178
                 l +++  +ii +DE+D + +k  d           +L+eL+   +  d + ++v vi  +n ++ 
  MMETSP1137-20121227|9115_1 307 LARENAPAIIFIDEVDAIATKRFDAqtgadrevqrILMELLTQMDGFDQS-VNVKVIMCTNRADT 370
                 56777889999*******96655556799999999999999885666655.99****99998765 PP

>> TIGR03922  T7SS_EccA: type VII secretion AAA-ATPase EccA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.0   9.9e-08     2e-05     315     411 ..     256     351 ..     251     395 .. 0.74

  Alignments for each domain:
  == domain 1    score: 21.2 bits;  conditional E-value: 9.9e-08
   TIGR03922 315 lllaGPPGtGkttiArvvakiyaGlgvlrkpevrEvsRadligeyigeseaktnelidkaLg...gvlFlDEayaLvekrdgak...ddfGleaidtLLarlE 411
                 +ll GPPGtGkt +A++va+  +        + + v  ++++ +y+ge      ++   a +    ++F+DE+ a+  kr +a+   d   + ++  LL +++
  MMETSP1137-20121227|9115_1 256 VLLYGPPGTGKTMLAKAVAHHTT-------ASFIRVVGSEFVQKYLGEGPRMVRDVFRLAREnapAIIFIDEVDAIATKRFDAQtgaDREVQRILMELLTQMD 351
                 799****************9854.......466778899**********999999887665522279********9999544331114445566777777776 PP

>> TIGR00763  lon: ATP-dependent protease La
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   0.1       3.3   6.7e+02     213     245 ..     111     127 ..      84     144 .. 0.49
   2 !   18.9   0.0   4.4e-07   9.1e-05     357     433 ..     257     325 ..     253     349 .. 0.74

  Alignments for each domain:
  == domain 1    score: -3.8 bits;  conditional E-value: 3.3
   TIGR00763 213 qekiakkveeklekeqreylLkeqlkaikkElG 245
                 q                e ++k++++ +k+El 
  MMETSP1137-20121227|9115_1 111 Q----------------EEYIKDEMHNLKRELV 127
                 2................2223333333333333 PP

  == domain 2    score: 18.9 bits;  conditional E-value: 4.4e-07
   TIGR00763 357 clvGPPGVGKtSlaksiAkalnrkfvrlslGGlkDvaeikGHRrtYvGalPGkiiqglkkvktenP.lillDEiDKlg 433
                  l+GPPG GKt lak++A+ +   f+r+ +G  +         + Y+G  P  + + ++ ++ + P +i++DE+D ++
  MMETSP1137-20121227|9115_1 257 LLYGPPGTGKTMLAKAVAHHTTASFIRV-VG-SE-------FVQKYLGEGPRMVRDVFRLARENAPaIIFIDEVDAIA 325
                 69*************************7.44.22.......2356888888444455555555556456788888877 PP

>> TIGR00382  clpX: ATP-dependent Clp protease, ATP-binding subunit ClpX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   5.1e-06    0.0011     120     202 ..     256     332 ..     245     356 .. 0.77

  Alignments for each domain:
  == domain 1    score: 15.9 bits;  conditional E-value: 5.1e-06
   TIGR00382 120 illiGptGsGktllaqtlakeldvpfaiadattlteaGyvGedvenillkllqaadydvekaekGiiyideidkiarksenas 202
                 +ll Gp G+Gkt+la+++a++    f     + +    y+Ge    ++  +++ a     +    ii+ide+d ia k  +a 
  MMETSP1137-20121227|9115_1 256 VLLYGPPGTGKTMLAKAVAHHTTASFIRVVGSEF-VQKYLGEGPR-MVRDVFRLAR----ENAPAIIFIDEVDAIATKRFDAQ 332
                 799*******************999976655555.467***9854.4555665554....44568***********9875554 PP

>> TIGR00764  lon_rel: putative ATP-dependent protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.9   0.0   3.1e-05    0.0063      38      59 ..     254     275 ..     247     282 .. 0.90

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 3.1e-05
   TIGR00764  38 rnvlliGePGvGksmlakamae 59 
                 r vll G PG+Gk+mlaka+a 
  MMETSP1137-20121227|9115_1 254 RGVLLYGPPGTGKTMLAKAVAH 275
                 89******************96 PP

>> TIGR00368  TIGR00368: Mg chelatase-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.2   0.1   5.2e-05     0.011     213     231 ..     255     273 ..     247     277 .. 0.86

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 5.2e-05
   TIGR00368 213 nllllGPPGsGktllakrl 231
                  +ll GPPG+Gkt+lak +
  MMETSP1137-20121227|9115_1 255 GVLLYGPPGTGKTMLAKAV 273
                 589*************986 PP

>> TIGR02639  ClpA: ATP-dependent Clp protease ATP-binding subunit ClpA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.1   0.1       3.5   7.1e+02     329     358 ..      94     123 ..      83     137 .. 0.72
   2 !   11.3   0.0   7.3e-05     0.015     486     527 ..     253     293 ..     247     296 .. 0.88
   3 ?    0.4   0.0      0.15        30     257     291 ..     292     326 ..     291     351 .. 0.74

  Alignments for each domain:
  == domain 1    score: -4.1 bits;  conditional E-value: 3.5
   TIGR02639 329 ifekdkaLsrrfqkidveePskeetvkilk 358
                 +++k k+L+r+ + ++++e  +++ ++ lk
  MMETSP1137-20121227|9115_1  94 MYAKMKSLQRQLEFLEIQEEYIKDEMHNLK 123
                 677888888888888888887777666554 PP

  == domain 2    score: 11.3 bits;  conditional E-value: 7.3e-05
   TIGR02639 486 PvgsflfvGptGvGktelakqLaeelgvellrfDmseymekh 527
                 P g  l +Gp G Gkt lak++a++   +++r   se+  k+
  MMETSP1137-20121227|9115_1 253 PRG-VLLYGPPGTGKTMLAKAVAHHTTASFIRVVGSEFVQKY 293
                 444.4668*****************************99885 PP

  == domain 3    score: 0.4 bits;  conditional E-value: 0.15
   TIGR02639 257 kyrGdfeerlkevveeiekeedailfiDeihtivg 291
                 ky G+  + +++v +  +++  ai+fiDe+ +i  
  MMETSP1137-20121227|9115_1 292 KYLGEGPRMVRDVFRLARENAPAIIFIDEVDAIAT 326
                 67777777788888888888999******999865 PP

>> TIGR02881  spore_V_K: stage V sporulation protein K
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.0   0.0   8.6e-05     0.018      46     118 ..     257     325 ..     254     359 .. 0.85

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 8.6e-05
   TIGR02881  46 ifkGnPGtGkttvarllaklfkelnvlskGhlieveradlvGeyiGhtaqktrevikka...lGGvlfideaysla 118
                 ++ G PGtGkt +a+ +a+        +   +i v  +++v +y+G+  + +r+v + a      ++fide  ++a
  MMETSP1137-20121227|9115_1 257 LLYGPPGTGKTMLAKAVAHH-------TTASFIRVVGSEFVQKYLGEGPRMVRDVFRLArenAPAIIFIDEVDAIA 325
                 56799**********99985.......45678999999****************998662115689*****98876 PP

>> TIGR02640  gas_vesic_GvpN: gas vesicle protein GvpN
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   0.00011     0.023      22      55 ..     254     287 ..     248     295 .. 0.85

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 0.00011
   TIGR02640  22 ypvhlrGPaGtGktslalhvakkrdrPvvllnGd 55 
                 + v l GP GtGkt la +va++     + + G 
  MMETSP1137-20121227|9115_1 254 RGVLLYGPPGTGKTMLAKAVAHHTTASFIRVVGS 287
                 568899****************998888887775 PP

>> TIGR00678  holB: DNA polymerase III, delta' subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   0.00015     0.031      15      41 ..     254     280 ..     247     345 .. 0.82

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 0.00015
   TIGR00678  15 hAlLfaGpeGvGkealaealakallCe 41 
                   +L++Gp+G+Gk++la+a+a+++ ++
  MMETSP1137-20121227|9115_1 254 RGVLLYGPPGTGKTMLAKAVAHHTTAS 280
                 679******************998776 PP

>> TIGR03420  DnaA_homol_Hda: DnaA regulatory inactivator Hda
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   0.00013     0.027      39     106 ..     254     328 ..     243     347 .. 0.72

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 0.00013
   TIGR03420  39 rllylwGesgsGksHLLqAacaaaeeagksai.....ylplkelaqllvev..legleqaelvalDdvealager 106
                 r + l+G++g+Gk+ L +A+++++++   +++        l e  ++  +v  l+  ++ +++ +D+v+a+a +r
  MMETSP1137-20121227|9115_1 254 RGVLLYGPPGTGKTMLAKAVAHHTTASFIRVVgsefvQKYLGEGPRMVRDVfrLARENAPAIIFIDEVDAIATKR 328
                 56789*****************99876444331110022233334444455446666777889999999998876 PP

>> TIGR01313  therm_gnt_kin: carbohydrate kinase, thermoresistant glucokinase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.0         9   1.9e+03     119     137 ..      95     113 ..      89     133 .. 0.63
   2 ?    9.6   0.0   0.00074      0.15       2      27 ..     257     282 ..     256     290 .. 0.91
   3 ?    0.9   0.0      0.35        72      84     117 ..     300     334 ..     298     360 .. 0.87

  Alignments for each domain:
  == domain 1    score: -3.7 bits;  conditional E-value: 9
   TIGR01313 119 fmkadllesqfeaLeepta 137
                 + k + l+ q+e Le  ++
  MMETSP1137-20121227|9115_1  95 YAKMKSLQRQLEFLEIQEE 113
                 5566667777777765443 PP

  == domain 2    score: 9.6 bits;  conditional E-value: 0.00074
   TIGR01313   2 vlmGvaGsGkstiakelakklgakfi 27 
                 +l G+ G+Gk+ +ak++a++  a+fi
  MMETSP1137-20121227|9115_1 257 LLYGPPGTGKTMLAKAVAHHTTASFI 282
                 578*******************9998 PP

  == domain 3    score: 0.9 bits;  conditional E-value: 0.35
   TIGR01313  84 kYRDllR.eaeaelafiyLeaskevilkRlksRkg 117
                   RD++R  +e   a+i+++   ++++kR  +  g
  MMETSP1137-20121227|9115_1 300 MVRDVFRlARENAPAIIFIDEVDAIATKRFDAQTG 334
                 679****77777889**************998776 PP

>> TIGR02903  spore_lon_C: ATP-dependent protease, Lon family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0    0.0002     0.041     174     195 ..     252     273 ..     226     281 .. 0.82

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 0.0002
   TIGR02903 174 fpqhiilyGppGvGkttaarla 195
                  p+ ++lyGppG Gkt  a+ +
  MMETSP1137-20121227|9115_1 252 PPRGVLLYGPPGTGKTMLAKAV 273
                 5899*************99876 PP

>> TIGR02902  spore_lonB: ATP-dependent protease LonB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.0   0.00028     0.057      86     109 ..     253     276 ..     244     289 .. 0.85

  Alignments for each domain:
  == domain 1    score: 9.8 bits;  conditional E-value: 0.00028
   TIGR02902  86 pqhviiyGppGvGktaaarlvlee 109
                 p+ v++yGppG Gkt  a+ v ++
  MMETSP1137-20121227|9115_1 253 PRGVLLYGPPGTGKTMLAKAVAHH 276
                 889*************99988655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (587 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       220  (0.0536324); expected 82.0 (0.02)
Passed bias filter:                      200  (0.0487567); expected 82.0 (0.02)
Passed Vit filter:                        60  (0.014627); expected 4.1 (0.001)
Passed Fwd filter:                        20  (0.00487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              20  [number of targets reported over threshold]
# CPU time: 0.71u 0.19s 00:00:00.89 Elapsed: 00:00:00.60
# Mc/sec: 1291.29
//
Query:       MMETSP1137-20121227|9116_1  [L=287]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (287 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       345  (0.0841053); expected 82.0 (0.02)
Passed bias filter:                      108  (0.0263286); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.18s 00:00:00.46 Elapsed: 00:00:00.43
# Mc/sec: 880.95
//
Query:       MMETSP1137-20121227|9117_1  [L=619]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (619 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       106  (0.0258411); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.12s 00:00:00.53 Elapsed: 00:00:00.52
# Mc/sec: 1571.18
//
Query:       MMETSP1137-20121227|9118_1  [L=230]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (230 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        77  (0.0187713); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.15s 00:00:00.38 Elapsed: 00:00:00.62
# Mc/sec: 489.64
//
Query:       MMETSP1137-20121227|9119_1  [L=191]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (191 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       155  (0.0377864); expected 82.0 (0.02)
Passed bias filter:                      112  (0.0273038); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.18s 00:00:00.38 Elapsed: 00:00:00.34
# Mc/sec: 741.47
//
Query:       MMETSP1137-20121227|9120_1  [L=153]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (153 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        63  (0.0153584); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.13s 00:00:00.29 Elapsed: 00:00:00.32
# Mc/sec: 631.07
//
Query:       MMETSP1137-20121227|9121_1  [L=182]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (182 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       173  (0.0421745); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.17s 00:00:00.39 Elapsed: 00:00:00.32
# Mc/sec: 750.69
//
Query:       MMETSP1137-20121227|9123_1  [L=210]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.6e-22   76.2   7.4      8e-22   75.9   5.1    1.1  1  TIGR00817 tpt: Tpt phosphate/phosphoenolpyruvate translocator
    2.2e-08   31.6  15.1    4.2e-08   30.7  10.4    1.5  1  TIGR00950 2A78: carboxylate/amino acid/amine transporter
     0.0021   15.6   7.5     0.0021   15.6   5.2    2.3  2  TIGR00803 nst: UDP-galactose transporter


Domain annotation for each model (and alignments):
>> TIGR00817  tpt: Tpt phosphate/phosphoenolpyruvate translocator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.9   5.1   5.8e-25     8e-22      84     295 ..       1     209 [.       1     210 [] 0.90

  Alignments for each domain:
  == domain 1    score: 75.9 bits;  conditional E-value: 5.8e-25
   TIGR00817  84 vslskvavSfthtikalepifsvvlskfflgrefpltlylsLlpivlGvalasltelsfnllgflsamisniefvarnifsKkiltkk..sldklnlyalisililfllspiafiveglklltreflqaiskvnvlklvtvslvaalgifHlyq.qvafqllervspltysvgNvlKRvvvIvvSilffetkisflqvlGvilaiaGvflYskvk 295
                 ++l+ + vSf  ++ a +p+f++ l  ++ g+ +    y+sLlp+ +Gv+l +  e +fn++gf   +is +    ++i+  k+lt     ld l+l   +s  +++ l   a + e + +    +l +    + l+++   l+ ++g+  ++     f + +  s++   v   +K v  I+vS+++f+++++   vlG ++++ Gv++Y++ k
  MMETSP1137-20121227|9123_1   1 MALQYIFVSFAQMVTAASPLFTACLMFLMTGKRYSKLAYFSLLPMCGGVMLCTAGEINFNIVGFSLVIISTLLRGVKSIVQGKLLTAPeeRLDALTLLYHMSRSSVVPLGAYAAAFEYPAIHD-PLLRG---HGALRIW--GLIFLSGFVSFFLnVCNFLVTKYTSAVALQVLGNVKVVLSIGVSLVIFGNPVTSWSVLGCVITLGGVAIYNQAK 209
                 6788999*******************************************************************************76779***********888888888888888877776.77777...7889999..555566666666538889999999******98889***********************************9976 PP

>> TIGR00950  2A78: carboxylate/amino acid/amine transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.7  10.4   3.1e-11   4.2e-08      67     263 ..       2     202 ..       1     203 [. 0.82

  Alignments for each domain:
  == domain 1    score: 30.7 bits;  conditional E-value: 3.1e-11
   TIGR00950  67 avkkltvaiaalllvlaPlyvtllsdllekervrkkkllAavlalaGivlllsdgnlsislaGlllgllsgisfAlgt.vlakrlvkkeglellqftgfvvlliGallllpfalllgpnlq.alpat.slqwlallyLgligtllayfly...nkglkevdasaasilalleplvallLgllilgetlslvqliggalilaav 263
                 a ++  v++a ++++ +Pl++++l +l+  +r +k++ ++++    G v+l ++g+++++  G+ l+++s++   + + v  k l+++e+  l ++t    +  ++++ l +++++++ +    p + + + l +  L ++  ++ +fl    +   k+ +a+a+ +l++++++ ++ ++l+i+g+ ++ ++ +g ++ l++v
  MMETSP1137-20121227|9123_1   2 ALQYIFVSFAQMVTAASPLFTACLMFLMTGKRYSKLAYFSLLPMCGG-VMLCTAGEINFNIVGFSLVIISTLLRGVKSiVQGKLLTAPEE-RLDALTLLYHMSRSSVVPLGAYAAAFEYPAiHDPLLrGHGALRIWGLIFLSGFVSFFLNvcnFLVTKYTSAVALQVLGNVKVVLSIGVSLVIFGNPVTSWSVLGCVITLGGV 202
                 677888**********************************9988888.*************************99977155677777777.666667777899999997777777666654044544123344455677778899998862214567899************************************9998886 PP

>> TIGR00803  nst: UDP-galactose transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.1     0.061        83      17      41 ..      21      45 ..       6      58 .. 0.68
   2 !   15.6   5.2   1.5e-06    0.0021     155     222 .]     134     205 ..     130     205 .. 0.86

  Alignments for each domain:
  == domain 1    score: 0.6 bits;  conditional E-value: 0.061
   TIGR00803 17 lvalgnllaagkqvTqlkilstalm 41
                ++a    l+ gk++++l ++s + m
  MMETSP1137-20121227|9123_1 21 FTACLMFLMTGKRYSKLAYFSLLPM 45
                5555556667777777777776544 PP

  == domain 2    score: 15.6 bits;  conditional E-value: 1.5e-06
   TIGR00803 155 vwivvllnvvgglcvglvv....kyadnttksivlalsiilslllsvrlfdaklsltfalgvilvflatllY 222
                 +w +++l+ + ++++ +++    ky++ + + + + ++ +ls+  s+++f++++++ ++lg ++   ++++Y
  MMETSP1137-20121227|9123_1 134 IWGLIFLSGFVSFFLNVCNflvtKYTSAVALQVLGNVKVVLSIGVSLVIFGNPVTSWSVLGCVITLGGVAIY 205
                 68889999999998888872222567777999999**********************************999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (210 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       201  (0.0490005); expected 82.0 (0.02)
Passed bias filter:                      105  (0.0255973); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.23u 0.18s 00:00:00.41 Elapsed: 00:00:00.42
# Mc/sec: 659.95
//
Query:       MMETSP1137-20121227|9124_1  [L=233]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (233 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        73  (0.0177962); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.17s 00:00:00.39 Elapsed: 00:00:00.31
# Mc/sec: 992.05
//
Query:       MMETSP1137-20121227|9125_1  [L=148]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (148 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       124  (0.0302292); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                        21  (0.00511945); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.18s 00:00:00.44 Elapsed: 00:00:00.38
# Mc/sec: 514.06
//
Query:       MMETSP1137-20121227|9126_1  [L=366]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.1e-24   82.1   0.1    8.7e-24   81.8   0.1    1.0  1  TIGR00204 dxs: 1-deoxy-D-xylulose-5-phosphate synthase
    0.00011   18.7   0.4    0.00024   17.6   0.0    1.7  2  TIGR03710 OAFO_sf: 2-oxoacid:acceptor oxidoreductase, alpha subunit
  ------ inclusion threshold ------
      0.027   10.6   0.0      0.034   10.3   0.0    1.3  1  TIGR00232 tktlase_bact: transketolase


Domain annotation for each model (and alignments):
>> TIGR00204  dxs: 1-deoxy-D-xylulose-5-phosphate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.8   0.1   6.4e-27   8.7e-24     310     586 ..      39     336 ..       9     356 .. 0.76

  Alignments for each domain:
  == domain 1    score: 81.8 bits;  conditional E-value: 6.4e-27
   TIGR00204 310 psyskifsdtllelakkdekivgitaamreGsgl....dklskkf.PkryfdvaiaeqhavtlaaalaieGlkPvvaiys.tflqraydqvvhdva....iqklpvllaidraGivGad.G..ethqGlfdisylrsiPnlvlmaPkdenelkqmlvtaleydegpialr....yPrGnavgveltee.ekleiGksellrkgedilllgfGtlveealevaeelkekgieatvvdlrfvkPldeelikalakeieklvtleenvllGGvgsavaevlsdqn....vlvpvkrlgipde 586
                 ++  +++   + e  ++de++  i   +++  g     ++l ++f  kr++d  i+e   + la++ a  Gl+P+v   +  f  +a d+v+  +a    ++ +++++ i   G  Ga  G  + h   f   y+ + P l ++aP   ++++ m++ a++ d+  i l     y     v     ++  +++iG+ ++ r g d+ l+++ + v++ le+a+el ++g+e+ vv++r ++Pld + i   + ++++lvt+ee+  + Gvg+ +  ++ +++       pv+r+   d+
  MMETSP1137-20121227|9126_1  39 MTVREALNSAMKEEMQRDENVFVIGEEVAQYQGAykitKGLLEEFgTKRVIDTPITEMGFAGLATGAAYTGLRPIVEFMTfNFSMQAIDHVINSAAkmyyMSGAQIKVPIVFRGPNGAAaGvaAQHSQCFAAWYMHC-PGLKVIAPYSAEDARGMMKAAIRDDNPVIVLEneilYGMSFPVSEACYDKdFTVPIGECKIERAGSDVTLVSYSKGVHTCLEAADELAKQGVECEVVNIRTLRPLDRKTIIDSVMKTNRLVTVEEGWPTCGVGAEIGAAIYESEafnyLDAPVERVTGADI 336
                 45567777788888888888888876665544440011446677745799**************************9765368899*******99833334678888888877777764232256888999888876.**********************99977776652211444444444444445789*******************************************************99999*****************998887776665422124566666666555 PP

>> TIGR03710  OAFO_sf: 2-oxoacid:acceptor oxidoreductase, alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.9   0.1      0.57   7.8e+02     250     263 ..      99     112 ..      94     114 .. 0.78
   2 !   17.6   0.0   1.7e-07   0.00024     462     522 ..     239     300 ..     229     302 .. 0.91

  Alignments for each domain:
  == domain 1    score: -3.9 bits;  conditional E-value: 0.57
   TIGR03710 250 inmaiGAsyaGara 263
                 ++ a GA+y+G r 
  MMETSP1137-20121227|9126_1  99 AGLATGAAYTGLRP 112
                 67899******985 PP

  == domain 2    score: 17.6 bits;  conditional E-value: 1.7e-07
   TIGR03710 462 edadvlvigwGstkgaikeaverlreeglkvallhlrllnPlpke.laellekakkvvvvEq 522
                 + +dv+++++    +++ ea+++l ++g++++++++r l Pl ++ + + + k +++v+vE+
  MMETSP1137-20121227|9126_1 239 AGSDVTLVSYSKGVHTCLEAADELAKQGVECEVVNIRTLRPLDRKtIIDSVMKTNRLVTVEE 300
                 467999***************************************98888899999999996 PP

>> TIGR00232  tktlase_bact: transketolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   2.5e-05     0.034     480     601 ..     176     298 ..      41     305 .. 0.75

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 2.5e-05
   TIGR00232 480 pnlsvwRPaDeketaaayklalesqdaptvlilsRqnlpqle......esslekvlkGgYvlkdsknPdiiliatGsevelaveaakkLakenikvrvvslpsidlldkqdeeYresvlpanvtllai 601
                 p l+v+ P  ++++   +k a++ +d+p v++l    l  +         +++ +   g    ++++ d++l++    v+ ++eaa++Lak++++  vv + +++ ld++     +sv+++n   +++
  MMETSP1137-20121227|9126_1 176 PGLKVIAPYSAEDARGMMKAAIR-DDNP-VIVLENEILYGMSfpvseaCYDKDFTVPIGECKIERAGSDVTLVSYSKGVHTCLEAADELAKQGVECEVVNIRTLRPLDRKT--IIDSVMKTNRL-VTV 298
                 56666666666555555555555.3333.444444444444432221222333344445556678899********************************99999888753..45666665543.555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (366 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       137  (0.0333983); expected 82.0 (0.02)
Passed bias filter:                      108  (0.0263286); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.34u 0.16s 00:00:00.50 Elapsed: 00:00:00.49
# Mc/sec: 985.88
//
Query:       MMETSP1137-20121227|9128_1  [L=281]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (281 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        84  (0.0204778); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.14s 00:00:00.37 Elapsed: 00:00:00.37
# Mc/sec: 1002.40
//
Query:       MMETSP1137-20121227|9129_1  [L=545]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (545 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        45  (0.0109703); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.15s 00:00:00.48 Elapsed: 00:00:00.45
# Mc/sec: 1598.53
//
Query:       MMETSP1137-20121227|9130_1  [L=138]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (138 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        42  (0.0102389); expected 82.0 (0.02)
Passed bias filter:                       40  (0.00975134); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.15s 00:00:00.29 Elapsed: 00:00:00.44
# Mc/sec: 413.97
//
Query:       MMETSP1137-20121227|9131_1  [L=201]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      0.002   13.7  13.7     0.0023   13.5   9.5    1.0  1  TIGR02168 SMC_prok_B: chromosome segregation protein SMC


Domain annotation for each model (and alignments):
>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   9.5   5.5e-07    0.0023     748     937 ..       6     198 ..       2     201 .] 0.57

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 5.5e-07
   TIGR02168 748 eerlaqlekeleeleeereeleeeleeaeeelkeaeeeieeleaeieqlkeelkalrealseleaeltelk.eeaaekeerleslekeiaalekeleeleeqieel.eeeiesleaeieeleeele.eleeeleellkekasleealaelreeleelseelrelekkvkelereleelreklaqlelrleele 937
                 ++r +q ++  +e ++++ +++  l++ + e +e e e+  ++++ + l++e+k l+e+ ++++a++++++   a   + ++++l ++i + +++l + ++++++l +++ ++l+  +e   ++   e++e+  +++ ++++ ++++++l ++++  +++l e+++++ +l+r+le  r++ ++++ r+++l+
  MMETSP1137-20121227|9131_1   6 AARSKQGQEGHTEDQAREPTQAFLLNSPHLEREELEHELWLVRRRSAGLEREIKLLEEETTAANAQVENQRpLGAMVSNAEMKRLDRQITNERTMLVQRQKELAQLlSDDRTRLTLVVEXGVQQYFgEMRERQLSMKPQYTAPSADIEALAQQRDLWRRQLSEAKQELGRLTRKLEVVRTECEDYRIRVNSLD 198
                 5555555555555566666666666666666677777777777777777777777777777777777744413344444566666777777666666666666654255566666666554443322555555556666666666666666666666666666666666666666666666666666665554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (201 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       216  (0.0526572); expected 82.0 (0.02)
Passed bias filter:                      102  (0.0248659); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.25u 0.16s 00:00:00.41 Elapsed: 00:00:00.28
# Mc/sec: 914.82
//
Query:       MMETSP1137-20121227|9132_1  [L=35]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (35 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        18  (0.0043881); expected 82.0 (0.02)
Passed bias filter:                       18  (0.0043881); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.16s 00:00:00.27 Elapsed: 00:00:00.23
# Mc/sec: 200.85
//
Query:       MMETSP1137-20121227|9133_1  [L=80]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.93    8.0   5.2       0.94    8.0   3.6    1.0  1  TIGR02747 TraV: type IV conjugative transfer system protein TraV
        3.2    4.7  11.3        3.4    4.6   7.8    1.0  1  TIGR00601 rad23: UV excision repair protein Rad23


Domain annotation for each model (and alignments):
>> TIGR02747  TraV: type IV conjugative transfer system protein TraV
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   3.6   0.00046      0.94      35     107 ..       6      77 ..       1      80 [] 0.74

  Alignments for each domain:
  == domain 1    score: 8.0 bits;  conditional E-value: 0.00046
   TIGR02747  35 gtcatmdqvnedkkrleqqeevkkdllegeekeeavlvestvtlakaktvaakkslqktpaikplvakerepk 107
                 +  a+m  v+++ kr ++ + + +d + ++ k+ +  + s+ ++  a  +aakk+++k  ++k l a +  ++
  MMETSP1137-20121227|9133_1   6 DLMAEMPSVKKA-KRAKKAKATPEDAADSSGKAADAAPPSASKEDDAAAKAAKKAAKKAKKKKKLEAMKSGGN 77 
                 677899999997.566666666666799999**9999989888888888888888888877777766655444 PP

>> TIGR00601  rad23: UV excision repair protein Rad23
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   7.8    0.0017       3.4      68     131 ..       6      67 ..       2      79 .. 0.52

  Alignments for each domain:
  == domain 1    score: 4.6 bits;  conditional E-value: 0.0017
   TIGR00601  68 dfvvvmvskkKavkakaaePaatpesaptptpsatpasvaekksaaPasaveeessaeeeatat 131
                 d +  m s kKa +  a++ +atpe a+ ++ +a +a++++++++  a+a + ++ a+++++  
  MMETSP1137-20121227|9133_1   6 DLMAEMPSVKKAKR--AKKAKATPEDAADSSGKAADAAPPSASKEDDAAAKAAKKAAKKAKKKK 67 
                 55566666666665..444555666555555555555555555555555555555554444333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (80 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       330  (0.0804486); expected 82.0 (0.02)
Passed bias filter:                      220  (0.0536324); expected 82.0 (0.02)
Passed Vit filter:                        32  (0.00780107); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.17u 0.20s 00:00:00.37 Elapsed: 00:00:00.92
# Mc/sec: 114.77
//
Query:       MMETSP1137-20121227|9134_1  [L=549]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (549 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       161  (0.0392491); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.15s 00:00:00.50 Elapsed: 00:00:00.64
# Mc/sec: 1132.22
//
Query:       MMETSP1137-20121227|9135_1  [L=369]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.2e-08   32.5   0.0    4.1e-08   31.6   0.0    1.4  1  TIGR01444 fkbM_fam: methyltransferase, FkbM family


Domain annotation for each model (and alignments):
>> TIGR01444  fkbM_fam: methyltransferase, FkbM family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.6   0.0     1e-11   4.1e-08       1     125 [.     111     240 ..     111     249 .. 0.72

  Alignments for each domain:
  == domain 1    score: 31.6 bits;  conditional E-value: 1e-11
   TIGR01444   1 vviDiGAniGdv...slvfaravaegrviafEPlpdllekleenvklnnlknvkllnaAvgdregeleftvs.ddatgnsslaadselaees.....eieVevvtlddlveeag...lekvdllKiDvEGaEleVLr 125
                 v++D G++ G +   + +f r+ + +   ++EP+p +++++ + ++ +       +++Av++ +g++e+  +   ++ n s+     l+++      +++V vvt   l+e+      + +d++ iDvE  El +L+
  MMETSP1137-20121227|9135_1 111 VFVDLGCYDGITysnTWYFERRLN-WIGLCVEPNPLVYARIAQSAGRTSG-----VQLAVSNAPGTMEMVAAyMRSSLNASFVDYA-LMRKLgvnteKVQVTVVTPTMLLERLPareGNTIDYVNIDVESQELAILA 240
                 6899*****988222346666666.799****************888888.....78********999865403344444444444.444444555667777777555555443323589***************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (369 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        90  (0.0219405); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.28u 0.14s 00:00:00.42 Elapsed: 00:00:00.55
# Mc/sec: 885.53
//
Query:       MMETSP1137-20121227|9136_1  [L=243]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (243 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       151  (0.0368113); expected 82.0 (0.02)
Passed bias filter:                      110  (0.0268162); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.16s 00:00:00.38 Elapsed: 00:00:00.24
# Mc/sec: 1336.39
//
Query:       MMETSP1137-20121227|9138_1  [L=176]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (176 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        74  (0.01804); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.17s 00:00:00.36 Elapsed: 00:00:00.28
# Mc/sec: 829.65
//
Query:       MMETSP1137-20121227|9139_1  [L=479]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (479 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       140  (0.0341297); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.16s 00:00:00.49 Elapsed: 00:00:00.35
# Mc/sec: 1806.37
//
Query:       MMETSP1137-20121227|9140_1  [L=705]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        1.7    5.5  10.8        3.3    4.5   7.5    1.4  1  TIGR01554 major_cap_HK97: phage major capsid protein, HK97 family
        4.9    3.1  14.3        6.6    2.7   9.9    1.1  1  TIGR00934 2a38euk: potassium uptake protein, Trk family


Domain annotation for each model (and alignments):
>> TIGR01554  major_cap_HK97: phage major capsid protein, HK97 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   7.5    0.0016       3.3      19     105 ..     196     287 ..     190     302 .. 0.58

  Alignments for each domain:
  == domain 1    score: 4.5 bits;  conditional E-value: 0.0016
   TIGR01554  19 tedekeeeaeeekkekdalkaeidkleaeierleea.........aaeeeakeaasgeagkeeeeeeeakeeaaeafraylrrgddalaee.....akals 105
                 + ++++++ ee+++  + l+++ ++le ++++l+++         +aee+++ +++g+ g++e+  +e+ +e         rrg +++  +     ++a++
  MMETSP1137-20121227|9140_1 196 KPAQTQAAFEEQQRRREMLQKQQRQLERQLAELQAQqqahlqaqqRAEEKRQSERRGGTGQSEAGTRERFQE---------RRGSQEGHGLqqvydRNAQQ 287
                 556677778888888888888888888888888888665544444444444444444444444444444444.........44444444333344433333 PP

>> TIGR00934  2a38euk: potassium uptake protein, Trk family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   9.9    0.0032       6.6     225     374 ..     187     330 ..     120     376 .. 0.62

  Alignments for each domain:
  == domain 1    score: 2.7 bits;  conditional E-value: 0.0032
   TIGR00934 225 slrfdeskekkkstrvpsekfakrresrdidpedlyrsimmlqekheatakirdkiseanslaaesdeessesrriqekikrrlstssieknsqqnltrlaktksfddskavrlersktidraeasdleeldrakdfqkmveknvkaakr 374
                 +  ++  + k  +t++++e+ ++rre  + + ++l+r  ++lq++++a+ + +++ +e+++++ +    +se+   +e+ + r + ++ +      l+++++ ++ ++ k+++ +r +  d+ ++   ++ ++++++ + + ++ ++++r
  MMETSP1137-20121227|9140_1 187 PSPSKRGQFKPAQTQAAFEEQQRRREMLQKQQRQLERQLAELQAQQQAHLQAQQRAEEKRQSERRGGTGQSEA-GTRERFQERRGSQEGH-----GLQQVYDRNAQQETKQQHHQRGQPHDHPQQEPPSQQQQQQKQVREHREQPQQQHR 330
                 44455667777889999999999****999*********9999999999999999888888777777766666.3344443333322221.....3334444444444443444444444433333333333333222222222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (705 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       290  (0.0706972); expected 82.0 (0.02)
Passed bias filter:                      101  (0.0246221); expected 82.0 (0.02)
Passed Vit filter:                        25  (0.00609459); expected 4.1 (0.001)
Passed Fwd filter:                         8  (0.00195027); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.68u 0.16s 00:00:00.84 Elapsed: 00:00:00.76
# Mc/sec: 1224.37
//
Query:       MMETSP1137-20121227|9141_1  [L=472]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   1.6e-111  371.2   0.3    2.3e-64  215.8   0.0    2.0  2  TIGR00458 aspS_arch: aspartate--tRNA ligase
    8.5e-48  161.1   0.0    3.7e-27   93.1   0.0    2.1  2  TIGR00457 asnS: asparagine--tRNA ligase
    1.2e-37  127.3   0.0    3.4e-21   73.0   0.0    2.1  2  TIGR00459 aspS_bact: aspartate--tRNA ligase
    8.1e-29   98.4   0.0      1e-27   94.8   0.0    2.0  1  TIGR00499 lysS_bact: lysine--tRNA ligase
    3.9e-14   50.6   0.0    5.1e-13   46.9   0.0    2.4  1  TIGR00462 genX: EF-P lysine aminoacylase GenX
    2.9e-05   21.4   0.1      0.023   11.9   0.0    3.1  3  TIGR02367 PylS_Cterm: pyrrolysine--tRNA ligase, C-terminal region
    0.00014   19.0   0.2       0.22    8.6   0.0    2.8  3  TIGR00468 pheS: phenylalanine--tRNA ligase, alpha subunit
     0.0088   12.9   0.0       0.14    8.9   0.0    2.1  2  TIGR00442 hisS: histidine--tRNA ligase


Domain annotation for each model (and alignments):
>> TIGR00458  aspS_arch: aspartate--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  215.8   0.0   4.5e-67   2.3e-64     111     298 ..       7     199 ..       3     220 .. 0.93
   2 !  153.7   0.0     3e-48   1.6e-45     295     427 ..     240     377 ..     216     378 .. 0.92

  Alignments for each domain:
  == domain 1    score: 215.8 bits;  conditional E-value: 4.5e-67
   TIGR00458 111 aeldtrldarfldlrrpkvqaifkirsevlesvreflaeegfievntPklvasateGGtelfeityfereaflaqsPqlykqvllaaglervyeiaPifraeehntkrhlnevisidiemafedh.kdvldileelvvrvfedvaeklkkelevlevklevpeekle....rltydeaieilrakGkeikdge 298
                  e +trld+r++dlr+++ q i++++s+ + ++re+l  +gf+e+++Pk++a+a+eGG+++f++ yf + a+laqsPqlykq+ l a+l rv+ei+P+fr+e++ t+rh++e++++d+em+f++  ++vl +lee+++ +fe ++ ++k+e+e    +++  + +++    rl y ea+++lr +G  i+  +
  MMETSP1137-20121227|9141_1   7 VEQNTRLDNRVIDLRTASSQGILRMQSQTCALFREVLLARGFTEIHSPKMIATASEGGADVFKLGYFGGAAYLAQSPQLYKQMALMADLGRVFEIGPVFRSEKSFTHRHMTEFVGLDLEMTFNESyHEVLSLLEEVFISIFEGLNARCKREIEAVRAQYPFEDLRFSrpalRLSYVEALKLLREHGPAIGAEQ 199
                 5889************************************************************************************************************************99***************************99999999999887333369*************9998643 PP

  == domain 2    score: 153.7 bits;  conditional E-value: 3e-48
   TIGR00458 295 kdgedlsteaekllG....ekmdglyfitd.fPteikPfytmPdednPeisksfdllyrdleissGaqrihdydllvekikakGlePeslksyleafkyGmPPhaGwGlGaerlvmvlldlknireavlfPrdrkrlt 427
                 +d ed+st+ ekllG       +++++++d fP+  +PfytmPd d+ + s+s+d++ r++e++sGaqrihd ++l e+  + G++   +k+y+++fkyG  PhaG+G+G+er+vm +l+l+nir++++fPrd+ +  
  MMETSP1137-20121227|9141_1 240 ADDEDISTKDEKLLGavigRLKQTDFYVIDkFPSCLRPFYTMPDPDDKKWSNSYDIFIRGEEVTSGAQRIHDPQMLLENGARLGVDLAPIKDYVDSFKYGAFPHAGGGIGLERVVMLFLNLDNIRKTSMFPRDPGKAA 377
                 578**********99777566789*****99******************************************************************************************************97765 PP

>> TIGR00457  asnS: asparagine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   93.1   0.0   7.2e-30   3.7e-27     120     310 ..      13     191 ..       3     200 .. 0.92
   2 !   66.1   0.0   1.1e-21   5.8e-19     324     453 ..     243     376 ..     225     378 .. 0.87

  Alignments for each domain:
  == domain 1    score: 93.1 bits;  conditional E-value: 7.2e-30
   TIGR00457 120 relahLrlRtktlsAvlkvRsalskaiheyfqkegfvkvstPiltssdcEGagelFkvktegvdfskdffgkeayLtvsgqlelEalala.lskvytlgptFRAEksntkRHlsEfwmiEpElaFvn.ledllqlieelikyiikavleeakqelkfleknvekkkikkleeiisskfaritYtdAieiLkes 310
                 ++++ + lRt+  + +l++ s+    ++e+   +gf+++++P ++++++EG++++Fk+          +fg  ayL++s ql+  ++++a l++v+ +gp FR Eks t+RH++Ef  ++ E++F +  ++ l+l ee+   i++ +   +k+e++ +  +   + ++      s    r+ Y +A+++L+e+
  MMETSP1137-20121227|9141_1  13 LDNRVIDLRTASSQGILRMQSQTCALFREVLLARGFTEIHSPKMIATASEGGADVFKLG---------YFGGAAYLAQSPQLYKQMALMAdLGRVFEIGPVFRSEKSFTHRHMTEFVGLDLEMTFNEsYHEVLSLLEEVFISIFEGLNARCKREIEAVRAQYPFEDLR-----FSRPALRLSYVEALKLLREH 191
                 5788999***************************************************9.........****************9998877***********************************989******************99******9999888776666.....33455788888888888876 PP

  == domain 2    score: 66.1 bits;  conditional E-value: 1.1e-21
   TIGR00457 324 vdlktehErflaeeyf...ks.PvfvtdyPkeikaFYmkqn.ddektvaavDllvPkiGEiiGGseReddldkLeerlkeegldteelkWyldlRkyGsvphsGfGlGleRlvayltglenirdaipfpRtaesi 453
                 +d++t+ E+ l   +    ++   ++ ++P  +++FY     dd+k  ++ D+++ +  E++ G++R++d + L e+  + g+d   +k y+d  kyG +ph+G G+GleR+v    +l nir ++ fpR ++++
  MMETSP1137-20121227|9141_1 243 EDISTKDEKLLGAVIGrlkQTdFYVIDKFPSCLRPFYTMPDpDDKKWSNSYDIFIRG-EEVTSGAQRIHDPQMLLENGARLGVDLAPIKDYVDSFKYGAFPHAGGGIGLERVVMLFLNLDNIRKTSMFPRDPGKA 376
                 5788888888765543111332457789*********77776***********9976.69**********************************************************************98775 PP

>> TIGR00459  aspS_bact: aspartate--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.0   0.0   6.7e-24   3.4e-21     117     305 ..       7     192 ..       3     259 .. 0.81
   2 !   52.3   0.0   1.3e-17   6.7e-15     467     558 ..     286     373 ..     278     387 .. 0.89

  Alignments for each domain:
  == domain 1    score: 73.0 bits;  conditional E-value: 6.7e-24
   TIGR00459 117 aeeevrlkyRYLdLRrpkmqqrlklRskvtkavRnflddkgFleietPiLtkatPeGardyLvPsRvkkgefyaLpqsPqlfkqLLmvsGvdkYyqiarcfRDeDlRaDRq.PeftqiDlemsFlnq.edvmelveklvsevfkevkkidlkkkfpvltyeeameryGsDkPDlRfelelidvadllkdke 305
                 +e++ rl  R +dLR +++q +l++ s+     R++l  +gF+ei  P +  +  eG  d           +  L qsPql+kq+ +++ + + + i  +fR e +   R   ef  +Dlem+F ++ ++v++l+e+++ ++f+ + +   k+++ +++ +  +e     +P lR     ++ + ll+++ 
  MMETSP1137-20121227|9141_1   7 VEQNTRLDNRVIDLRTASSQGILRMQSQTCALFREVLLARGFTEIHSPKMIATASEGGADVFKLGYFGGAAY--LAQSPQLYKQMALMADLGRVFEIGPVFRSEKSFTHRHmTEFVGLDLEMTFNESyHEVLSLLEEVFISIFEGL-NARCKREIEAVRAQYPFEDLRFSRPALRLS--YVEALKLLREHG 192
                 57789****************************************************999887776666655..78******************************9999747***********986479*************998.888999999988888888888888888864..455555665555 PP

  == domain 2    score: 52.3 bits;  conditional E-value: 1.3e-17
   TIGR00459 467 eealaeayDlvlnGvelGgGsiRihdkelqekvfeilgideeearekFgflleafeyGaPphaGlalGlDRlvmllaetdsiRdviaFPkta 558
                 ++  ++ yD+ + G e+ +G+ Rihd+++  +  + lg+d +         ++ f+yGa phaG ++Gl+R+vml+ + d+iR +  FP+  
  MMETSP1137-20121227|9141_1 286 DKKWSNSYDIFIRGEEVTSGAQRIHDPQMLLENGARLGVDLAP----IKDYVDSFKYGAFPHAGGGIGLERVVMLFLNLDNIRKTSMFPRDP 373
                 566799************************9999******996....44568*************************************874 PP

>> TIGR00499  lysS_bact: lysine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.8   0.0     2e-30     1e-27     150     490 ..       8     370 ..       4     372 .. 0.81

  Alignments for each domain:
  == domain 1    score: 94.8 bits;  conditional E-value: 2e-30
   TIGR00499 150 dqEtryrkRylDlivnkesrqtflkRskiikaiRkfldergflEvEtPilqsisgGAsAkPFithhnaldvdlylRiApElyLKrLivgGlekvyEigrvFRnE.GvdttHnpEFttiElYqaya.dyedllelteellktlvkellgtlki.......kykeeeldlkkpvkkitmleaikkid.ketgislddlkdsetakalakklai.........evaekslslgkilnklfeefvEetliq................PtfiteyPaeisPL.AkrddenpelteRFElFikgkEianaysElndpldqrerfeeqvaekeagddeasllDedfvealeyGlpptgGlGiGiDRlvmlltdsksirdvllFp 490
                 +q+tr  +R++Dl +  +s+  +++ s+  ++ R+ l +rgf E+  P + + +    A  F+  +       yl   p ly +  +++ l +v+Eig vFR E    ++H +EF  ++l +++  +y+++l+l ee++ ++ + l+  +k        +y  e+l +++p  +++++ea+k ++ +   i+ ++l   e+ +a+a  +++          +a+ +  l+ + +++ +e +     +                  +i ++P  + P     d+++++  + +++Fi+g E++ + + + dp+  +e      +  ++g d+a++ D  +v++++yG  p +G GiG++R+vml+ + ++ir   +Fp
  MMETSP1137-20121227|9141_1   8 EQNTRLDNRVIDLRTA-SSQGILRMQSQTCALFREVLLARGFTEIHSPKMIATASEGGADVFKLGY--FGGAAYLAQSPQLYKQMALMADLGRVFEIGPVFRSEkSFTHRHMTEFVGLDLEMTFNeSYHEVLSLLEEVFISIFEGLNARCKReieavraQYPFEDLRFSRPALRLSYVEALKLLReHGPAIGAEQLAALEEEQAAAAAAGDeerakemdkIIADAKAHLATVPTHADDEDIST---KdekllgavigrlkqtdFYVIDKFPSCLRPFyTMPDPDDKKWSNSYDIFIRGEEVTSGAQRIHDPQMLLE------NGARLGVDLAPIKD--YVDSFKYGAFPHAGGGIGLERVVMLFLNLDNIRKTSMFP 370
                 5789999*******98.8999***************************9999888888889*9999..8999**********9999****************9945899************998537********************99988889999999999999999**********998885555688888776666555555554422222222112222233333333444433322...02223334555666444558999*******835689*****************************87654......45679******976..9*********************************99999 PP

>> TIGR00462  genX: EF-P lysine aminoacylase GenX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.9   0.0     1e-15   5.1e-13       3     303 ..      31     368 ..      29     369 .. 0.75

  Alignments for each domain:
  == domain 1    score: 46.9 bits;  conditional E-value: 1e-15
   TIGR00462   3 krakllaaiRafFaergvlEvetpllseapvtdvhlealktelleeekekeklyLqtSPEyamKrLLaagsgkifqlakvfRneer.grlHnpEFtmLEw.Yrvgadleelmeeveellqevle..............................................deeaeverlsyaeaferylgidpltasleelkeaaekag..eaaseeedredlldlllvekvepklgkerptflydyPasqaa.LarikkddervAeRfElYikglElaNgfeELtdaaeqrkRfeednaerkalgleevpldekllaaleaglpecsGvAlGlDRLlmlalgaesieevla 303
                  +++ +a  R+ + +rg++E+ +p +++ ++++   +++k  + +        yL  SP ++    L a  g++f+++ vfR+e +  ++H +EF  L+     + +++e+++ +ee++ +++e                                                 +++  l  ++a + ++g +  +++++++ + a+++   + ++++++  ++ d+ l+ +v  +l++  ++++ ++P++        ++dd+++++ ++++i+g E++ g + + d++        +n +r   g +  p+ ++++++ + g  + +G  +Gl+R++ml+l+ ++i++  +
  MMETSP1137-20121227|9141_1  31 MQSQTCALFREVLLARGFTEIHSPKMIA-TASEGGADVFKLGYFG-----GAAYLAQSPQLYKQMALMADLGRVFEIGPVFRSEKSfTHRHMTEFVGLDLeMTFNESYHEVLSLLEEVFISIFEglnarckreieavraqypfedlrfsrpalrlsyvealkllrehgpaIGAEQLAALEEEQAAAAAAGDEERAKEMDKIIADAKAHLatVPTHADDEDISTKDEKLLGAVIGRLKQTDFYVIDKFPSCLRPfYTMPDPDDKKWSNSYDIFIRGEEVTSGAQRIHDPQML-----LENGARL--GVDLAPI-KDYVDSFKYGAFPHAGGGIGLERVVMLFLNLDNIRKTSM 368
                 5677888899999***********9986.578889999**99655.....489*********9999****************9887699*******9986234556667777777777767766*********************96666666666666666555554443344444444444444444444444444444444444444333333334444568899999******************976515677889999************************865.....4555555..5555555.68999999999999999*****************98765 PP

>> TIGR02367  PylS_Cterm: pyrrolysine--tRNA ligase, C-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.0     0.084        43      37      55 ..      41      59 ..      12      63 .. 0.80
   2 !   11.9   0.0   4.4e-05     0.023     100     149 ..      91     139 ..      79     154 .. 0.72
   3 ?    4.0   0.0     0.011       5.7     204     229 ..     342     367 ..     332     369 .. 0.90

  Alignments for each domain:
  == domain 1    score: 1.1 bits;  conditional E-value: 0.084
   TIGR02367 37 kalvdrGfvevkspilisk 55
                ++l  rGf e++sp +i+ 
  MMETSP1137-20121227|9141_1 41 EVLLARGFTEIHSPKMIAT 59
                56889**********9975 PP

  == domain 2    score: 11.9 bits;  conditional E-value: 4.4e-05
   TIGR02367 100 llekpirifeiGscyrke.sdGsehleeftmlnlvelGspeeerrerleel 149
                 l+ +  r+feiG+ +r e s  ++h+ ef  l+l e+   +e  +e l+ l
  MMETSP1137-20121227|9141_1  91 LMADLGRVFEIGPVFRSEkSFTHRHMTEFVGLDL-EMTF-NESYHEVLSLL 139
                 5667779*********98456889******9998.4444.35555555544 PP

  == domain 3    score: 4.0 bits;  conditional E-value: 0.011
   TIGR02367 204 pwvGlGfGlerllkvredtknvrsaa 229
                 p  G G Gler++++  + +n+r+++
  MMETSP1137-20121227|9141_1 342 PHAGGGIGLERVVMLFLNLDNIRKTS 367
                 88999*****************9875 PP

>> TIGR00468  pheS: phenylalanine--tRNA ligase, alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0      0.58     3e+02      66      97 ..      24      55 ..       6      61 .. 0.72
   2 !    7.1   0.0    0.0012       0.6     181     239 ..      96     154 ..      81     166 .. 0.74
   3 !    8.6   0.0   0.00042      0.22     290     310 ..     345     365 ..     337     372 .. 0.88

  Alignments for each domain:
  == domain 1    score: -1.8 bits;  conditional E-value: 0.58
   TIGR00468 66 iasgklhpltkvieeikeiflelgftvekgpe 97
                 ++g l    ++   ++e++l+ gft++++p+
  MMETSP1137-20121227|9141_1 24 SSQGILRMQSQTCALFREVLLARGFTEIHSPK 55
                36777778888889999999*******99997 PP

  == domain 2    score: 7.1 bits;  conditional E-value: 0.0012
   TIGR00468 181 irifsigrvfRrda.vdatHlpeFhQveglvvdknvslknLkglleeflkklfgetevrf 239
                  r+f ig vfR ++  + +H +eF  +++  +  n s ++ + llee++ ++f+ ++ r 
  MMETSP1137-20121227|9141_1  96 GRVFEIGPVFRSEKsFTHRHMTEFVGLDL-EMTFNESYHEVLSLLEEVFISIFEGLNARC 154
                 599*********94245556666666663.445566777899999999999998877775 PP

  == domain 3    score: 8.6 bits;  conditional E-value: 0.00042
   TIGR00468 290 afGlgieRlamlkygikdiRd 310
                 + G+g+eR++ml +++++iR+
  MMETSP1137-20121227|9141_1 345 GGGIGLERVVMLFLNLDNIRK 365
                 67******************7 PP

>> TIGR00442  hisS: histidine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.9   0.0   0.00028      0.14      98     236 ..      96     236 ..      85     261 .. 0.60
   2 ?    1.6   0.0     0.045        23     290     320 ..     335     365 ..     331     371 .. 0.79

  Alignments for each domain:
  == domain 1    score: 8.9 bits;  conditional E-value: 0.00028
   TIGR00442  98 fklyyigpvFRyErpqkGR.yRqFhQldvevvGsespladaeii.alaaelleelglkevtleinslgilegrle.......ls..yreallryldkkldklgedsvrrleknplrildskaeklkellke.apkildflkeesleeleel 236
                  ++++igpvFR E+    R + +F+ ld e+  +es +  + ++ ++  +++e l+  +++ ei  ++    +++       l+  y ea l++l+++   +g+++ ++le+++        ++  +  +e  +k +d++ ++++++l ++
  MMETSP1137-20121227|9141_1  96 GRVFEIGPVFRSEKSFTHRhMTEFVGLDLEMTFNESYHEVLSLLeEVFISIFEGLNA-RCKREIEAVRAQYPFEDlrfsrpaLRlsYVEA-LKLLREHGPAIGAEQLAALEEEQ--------AAAAAAGDEeRAKEMDKIIADAKAHLATV 236
                 599************9999568*********99999875555552456666666666.58888888888887777443222211312222.23344444444444444444433........33333322222333333444444444444 PP

  == domain 2    score: 1.6 bits;  conditional E-value: 0.045
   TIGR00442 290 elggekvpavGfaiGieRllllleeegllee 320
                 +++  ++p  G +iG+eR+++l+ +++++++
  MMETSP1137-20121227|9141_1 335 SFKYGAFPHAGGGIGLERVVMLFLNLDNIRK 365
                 6667788999**********99977776665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (472 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       109  (0.0265724); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         8  (0.00195027); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.49u 0.16s 00:00:00.65 Elapsed: 00:00:00.53
# Mc/sec: 1175.45
//
Query:       MMETSP1137-20121227|9142_1  [L=314]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (314 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        59  (0.0143832); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.16s 00:00:00.40 Elapsed: 00:00:00.55
# Mc/sec: 753.54
//
Query:       MMETSP1137-20121227|9143_1  [L=289]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.037   11.7   0.4       0.11   10.2   0.1    1.9  2  TIGR04032 toxin_SdpC: antimicrobial peptide, SdpC family
       0.45    8.7   5.4        3.7    5.7   0.5    3.2  4  TIGR03798 ocin_TIGR03798: nif11-like leader peptide domain


Domain annotation for each model (and alignments):
>> TIGR04032  toxin_SdpC: antimicrobial peptide, SdpC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0      0.15     3e+02      95      95 ..     153     153 ..     125     185 .. 0.58
   2 ?   10.2   0.1   5.4e-05      0.11      58      95 ..     189     226 ..     166     246 .. 0.80

  Alignments for each domain:
  == domain 1    score: -1.0 bits;  conditional E-value: 0.15
   TIGR04032  95 a 95 
                 +
  MMETSP1137-20121227|9143_1 153 K 153
                 1 PP

  == domain 2    score: 10.2 bits;  conditional E-value: 5.4e-05
   TIGR04032  58 kkdPayfdelkeavrskDplkvdealtkggellqeaaa 95 
                  +dP++ d++++a+ s+D  k+ + +  ++++ +ea +
  MMETSP1137-20121227|9143_1 189 MEDPTFVDQMTKALMSGDMGKTLADMGMAAKAEEEAED 226
                 47******************999999888777666655 PP

>> TIGR03798  ocin_TIGR03798: nif11-like leader peptide domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.1      0.08   1.6e+02      12      30 ..     129     147 ..     123     157 .. 0.78
   2 ?    2.2   0.0     0.022        46      10      27 ..     152     169 ..     149     176 .. 0.83
   3 ?    2.1   0.0     0.025        51       4      20 ..     163     179 ..     161     186 .. 0.88
   4 ?    5.7   0.5    0.0018       3.7       6      47 ..     181     222 ..     177     232 .. 0.87

  Alignments for each domain:
  == domain 1    score: 0.5 bits;  conditional E-value: 0.08
   TIGR03798  12 kvktDpdLreklkaaespe 30 
                  ++  ++L+e+lk+ ++pe
  MMETSP1137-20121227|9143_1 129 SLQDPQMLQEALKELQDPE 147
                 55666789999*9999998 PP

  == domain 2    score: 2.2 bits;  conditional E-value: 0.022
   TIGR03798  10 lekvktDpdLreklkaae 27 
                 ++ + +Dpd+ e +k++ 
  MMETSP1137-20121227|9143_1 152 IKSMMEDPDFLESMKQYV 169
                 577899999999999984 PP

  == domain 3    score: 2.1 bits;  conditional E-value: 0.025
   TIGR03798   4 eqlkaFlekvktDpdLr 20 
                 e++k ++e++++Dp++ 
  MMETSP1137-20121227|9143_1 163 ESMKQYVEQITQDPQFE 179
                 899***********995 PP

  == domain 4    score: 5.7 bits;  conditional E-value: 0.0018
   TIGR03798   6 lkaFlekvktDpdLreklkaaespedrvaiakeaGFefteed 47 
                 lk   ek+ +Dp++ +++  a  ++d+ + + ++G   ++e+
  MMETSP1137-20121227|9143_1 181 LKKQTEKLMEDPTFVDQMTKALMSGDMGKTLADMGMAAKAEE 222
                 6777899*************************9999888887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (289 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       202  (0.0492443); expected 82.0 (0.02)
Passed bias filter:                      130  (0.0316919); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.29u 0.15s 00:00:00.43 Elapsed: 00:00:00.41
# Mc/sec: 930.36
//
Query:       MMETSP1137-20121227|9144_1  [L=230]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.7e-32  108.2  10.9    1.1e-31  107.7   7.6    1.2  1  TIGR00855 L12: ribosomal protein L7/L12


Domain annotation for each model (and alignments):
>> TIGR00855  L12: ribosomal protein L7/L12
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  107.7   7.6   2.7e-35   1.1e-31       6     124 ..     101     229 ..      97     230 .] 0.84

  Alignments for each domain:
  == domain 1    score: 107.7 bits;  conditional E-value: 2.7e-35
   TIGR00855   6 keeiiealkeltvlelselvkalEekfgvsAaaav....aaaaaaaaa.....aeaaeektEfdvilk.aaadkkiavikvvreitGlgLkEAkelvekaPkalkekvskeeAeelkkkleeaGakvev 124
                  +e+++++++lt+le++el  al ek g+s a ++    a +a +aaa      +  +ekt f+v+l+   a  ki+ ik+vr +tGlgLkEAke+vek+P  +k++++keeAe++k kle+aG+ v v
  MMETSP1137-20121227|9144_1 101 IQELVDQISSLTLLEAAELTDALKEKLGISSAMMMpmggAPMAGGAAAapaaeEAPVAEKTAFTVKLEsFDASAKIKLIKEVRALTGLGLKEAKEMVEKTPVEVKKDIKKEEAETIKGKLEAAGGVVVV 229
                 689*****************************9886666333433333222223334689********445666***************************************************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (230 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       160  (0.0390054); expected 82.0 (0.02)
Passed bias filter:                      107  (0.0260848); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.20u 0.16s 00:00:00.36 Elapsed: 00:00:00.33
# Mc/sec: 919.92
//
Query:       MMETSP1137-20121227|9145_1  [L=415]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (415 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        81  (0.0197465); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.16s 00:00:00.44 Elapsed: 00:00:00.43
# Mc/sec: 1273.85
//
Query:       MMETSP1137-20121227|9146_1  [L=277]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (277 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        49  (0.0119454); expected 82.0 (0.02)
Passed bias filter:                       42  (0.0102389); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.17s 00:00:00.39 Elapsed: 00:00:00.38
# Mc/sec: 962.13
//
Query:       MMETSP1137-20121227|9147_1  [L=721]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (721 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       102  (0.0248659); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.17s 00:00:00.63 Elapsed: 00:00:01.35
# Mc/sec: 704.92
//
Query:       MMETSP1137-20121227|9148_1  [L=360]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (360 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       102  (0.0248659); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.13s 00:00:00.39 Elapsed: 00:00:00.48
# Mc/sec: 989.92
//
Query:       MMETSP1137-20121227|9149_1  [L=48]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (48 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        90  (0.0219405); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.74
# Mc/sec: 85.61
//
Query:       MMETSP1137-20121227|9150_1  [L=366]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (366 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       119  (0.0290102); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.15s 00:00:00.42 Elapsed: 00:00:00.40
# Mc/sec: 1207.70
//
Query:       MMETSP1137-20121227|9151_1  [L=191]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        1.2    5.2   5.5        1.1    5.3   3.8    1.1  1  TIGR00934 2a38euk: potassium uptake protein, Trk family


Domain annotation for each model (and alignments):
>> TIGR00934  2a38euk: potassium uptake protein, Trk family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   3.8   0.00026       1.1     197     416 ..     114     181 ..      34     191 .] 0.52

  Alignments for each domain:
  == domain 1    score: 5.3 bits;  conditional E-value: 0.00026
   TIGR00934 197 krdeqdsvhsdqnsedvksdtsadesisslrfdeskekkkstrvpsekfakrresrdidpedlyrsimmlqekheatakirdkiseanslaaesdeessesrriqekikrrlstssieknsqqnltrlaktksfddskavrlersktidraeasdleeldrakdfqkmveknvkaakrkkknfkkreanlklfeksryakksdrneedngnkkdasksne 416
                 + + ++s  s                                                                                                                                                         d+ +  ++   +a rk+k  +k+e+++k  +k + +kk +r+++++++k+d+s++ e
  MMETSP1137-20121227|9151_1 114 SSTTSESDDS--------------------------------------------------------------------------------------------------------------------------------------------------------DDEPTRAVAVPAEADRKRKREHKSEKKSKKEKKHKKEKKLKREKKSKKEKRDKSDKAE 181
                 3333222222........................................................................................................................................................2221211111111222222222222222222222222222222222222222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (191 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       423  (0.10312); expected 82.0 (0.02)
Passed bias filter:                      176  (0.0429059); expected 82.0 (0.02)
Passed Vit filter:                        35  (0.00853242); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.25u 0.17s 00:00:00.42 Elapsed: 00:00:00.52
# Mc/sec: 484.81
//
Query:       MMETSP1137-20121227|9152_1  [L=121]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.032   11.5   0.8       0.21    8.8   0.5    1.9  1  TIGR00752 slp: outer membrane lipoprotein, Slp family


Domain annotation for each model (and alignments):
>> TIGR00752  slp: outer membrane lipoprotein, Slp family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   0.5   5.1e-05      0.21      42      69 ..      23      50 ..      12      92 .. 0.87

  Alignments for each domain:
  == domain 1    score: 8.8 bits;  conditional E-value: 5.1e-05
   TIGR00752 42 qpllyvgkearlGGkvvnvtnlktktkl 69
                q + ++g+++r+ Gk+v v+ + ++ +l
  MMETSP1137-20121227|9152_1 23 QSGQFHGQTVRVVGKLVGVQGNTAQLQL 50
                67889**************988777655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (121 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        90  (0.0219405); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.18u 0.16s 00:00:00.34 Elapsed: 00:00:00.28
# Mc/sec: 570.38
//
Query:       MMETSP1137-20121227|9153_1  [L=360]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (360 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       110  (0.0268162); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.16s 00:00:00.43 Elapsed: 00:00:00.45
# Mc/sec: 1055.91
//
Query:       MMETSP1137-20121227|9154_1  [L=469]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        4.6    5.0   9.3        7.2    4.3   6.4    1.3  1  TIGR03499 FlhF: flagellar biosynthesis protein FlhF
        6.2    3.6  18.1         12    2.7  12.6    1.5  1  TIGR01628 PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family
        9.4    2.6  11.6         17    1.8   8.0    1.3  1  TIGR03895 protease_PatA: cyanobactin maturation protease, PatA/PatG family


Domain annotation for each model (and alignments):
>> TIGR03499  FlhF: flagellar biosynthesis protein FlhF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   6.4    0.0053       7.2      56     109 ..     194     249 ..     136     264 .. 0.60

  Alignments for each domain:
  == domain 1    score: 4.3 bits;  conditional E-value: 0.0053
   TIGR03499  56 sasaaseeeeakkaleeae..pkklskaeekeekekeaeekaaeaaqeaekkleea 109
                 +a++++++++++++l++++  +++l++++++++ ++++++++++++q+++++++++
  MMETSP1137-20121227|9154_1 194 QAQQSHRQQQRQQQLTQQSpmSSQLPPQAQARQPSSSQSSPHQQQQQQQQQQQQQQ 249
                 22333333333333333330033344444444444444444444444444433333 PP

>> TIGR01628  PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7  12.6    0.0089        12     434     519 ..     163     248 ..      77     261 .. 0.45

  Alignments for each domain:
  == domain 1    score: 2.7 bits;  conditional E-value: 0.0089
   TIGR01628 434 tqnpskpeapnalaqlaqqrlqaqgrrnlnnr.nrnvlgnmnkkqqnaaskanqanvkaqpqaqskn..qmqqvvqdnnlpqkqatksn 519
                 ++++   + + ++ + +q   q++   +l++   ++ +++ ++++q++ ++++ ++ +  pqaq ++    q+++++++ +q+q+++++
  MMETSP1137-20121227|9154_1 163 PHQNAGYKGASSVPHHSQ---QTHTTSGLQQEiPQAQQSHRQQQRQQQLTQQSPMSSQLPPQAQARQpsSSQSSPHQQQQQQQQQQQQQ 248
                 111111111222222222...22333455555333334444455555555555566666666444432122222222222222211111 PP

>> TIGR03895  protease_PatA: cyanobactin maturation protease, PatA/PatG family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   8.0     0.012        17     245     336 ..     164     256 ..     139     262 .. 0.52

  Alignments for each domain:
  == domain 1    score: 1.8 bits;  conditional E-value: 0.012
   TIGR03895 245 veeasgaevesaaeseteaipaaeaeeaasvsiesaaaaekaakaaaeielsaaalaaaissaavsakas.egvtssaasselaeaqlvYalG 336
                 +++a   + +s+ ++++++ +++  +++++++++s+++++ +++ + +  +s++  ++a  ++ +s ++s ++++  +++++ +++q  Yal 
  MMETSP1137-20121227|9154_1 164 HQNAGYKGASSVPHHSQQTHTTSGLQQEIPQAQQSHRQQQRQQQLTQQSPMSSQLPPQAQARQPSSSQSSpHQQQQQQQQQQQQQQQGRYALN 256
                 333344444555555555555555566777777777775555555544444444444444333333333302333333333334777888885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (469 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       277  (0.067528); expected 82.0 (0.02)
Passed bias filter:                      142  (0.0346173); expected 82.0 (0.02)
Passed Vit filter:                        28  (0.00682594); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.44u 0.17s 00:00:00.61 Elapsed: 00:00:00.77
# Mc/sec: 803.93
//
Query:       MMETSP1137-20121227|9155_1  [L=233]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (233 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        82  (0.0199902); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.17s 00:00:00.38 Elapsed: 00:00:00.41
# Mc/sec: 750.08
//
Query:       MMETSP1137-20121227|9156_1  [L=44]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (44 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        30  (0.00731351); expected 82.0 (0.02)
Passed bias filter:                       30  (0.00731351); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.13s 00:00:00.23 Elapsed: 00:00:00.44
# Mc/sec: 131.99
//
Query:       MMETSP1137-20121227|9157_1  [L=369]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (369 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       285  (0.0694783); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.19s 00:00:00.41 Elapsed: 00:00:00.63
# Mc/sec: 773.08
//
Query:       MMETSP1137-20121227|9158_1  [L=186]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (186 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       134  (0.032667); expected 82.0 (0.02)
Passed bias filter:                      123  (0.0299854); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.18s 00:00:00.32 Elapsed: 00:00:00.43
# Mc/sec: 570.93
//
Query:       MMETSP1137-20121227|9159_1  [L=67]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (67 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        65  (0.0158459); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.16s 00:00:00.26 Elapsed: 00:00:00.27
# Mc/sec: 327.53
//
Query:       MMETSP1137-20121227|9161_1  [L=651]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (651 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       290  (0.0706972); expected 82.0 (0.02)
Passed bias filter:                      118  (0.0287665); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.24s 00:00:00.64 Elapsed: 00:00:00.44
# Mc/sec: 1952.84
//
Query:       MMETSP1137-20121227|9162_1  [L=288]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (288 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        65  (0.0158459); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.14s 00:00:00.36 Elapsed: 00:00:00.36
# Mc/sec: 1055.91
//
Query:       MMETSP1137-20121227|9164_1  [L=226]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.14    8.5   3.1       0.27    7.6   0.2    1.9  2  TIGR02868 CydC: thiol reductant ABC exporter, CydC subunit


Domain annotation for each model (and alignments):
>> TIGR02868  CydC: thiol reductant ABC exporter, CydC subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.2    0.0051        21     157     208 ..      19      74 ..       3      81 .. 0.55
   2 ?    7.6   0.2   6.5e-05      0.27      33      69 ..      89     126 ..      79     129 .. 0.85

  Alignments for each domain:
  == domain 1    score: 1.4 bits;  conditional E-value: 0.0051
   TIGR02868 157 lvlaaallvalvvaplvslr.aarsaeqalarlrsel...aaqlldllegaaelvv 208
                  +l+a+l +  v +++v lr a+r+++++++ +r ++   +++l d+l+++ae vv
  MMETSP1137-20121227|9164_1  19 FMLIAVLTIGSVRMSAVLLReAQRMKDNSKEMNRISMveqNQHLSDCLRARAENVV 74 
                 34555666666666666554255666666666655441114556666666666555 PP

  == domain 2    score: 7.6 bits;  conditional E-value: 6.5e-05
   TIGR02868  33 lavsawLisraaeqPp.vlylsvavvavRafgisravl 69 
                 +++ +++i+  a +Pp ++ +++a ++v + gi  av+
  MMETSP1137-20121227|9164_1  89 ISLLGYFIAEYAYAPPpIIWIMIACISVNICGIHWAVM 126
                 35779****99988888****************99986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (226 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       153  (0.0372989); expected 82.0 (0.02)
Passed bias filter:                       96  (0.0234032); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.23u 0.17s 00:00:00.40 Elapsed: 00:00:00.28
# Mc/sec: 1065.34
//
Query:       MMETSP1137-20121227|9165_1  [L=204]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (204 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       120  (0.029254); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.16s 00:00:00.36 Elapsed: 00:00:00.39
# Mc/sec: 690.40
//
Query:       MMETSP1137-20121227|9166_1  [L=377]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.2e-05   19.4   0.8      0.024   11.1   0.1    2.3  2  TIGR00990 3a0801s09: mitochondrial precursor proteins import receptor
     0.0039   15.6   9.5       0.07   11.6   0.9    3.9  4  TIGR02795 tol_pal_ybgF: tol-pal system protein YbgF


Domain annotation for each model (and alignments):
>> TIGR00990  3a0801s09: mitochondrial precursor proteins import receptor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.0   0.1    0.0002      0.41     555     578 ..     131     154 ..     102     166 .. 0.84
   2 !   11.1   0.1   1.2e-05     0.024     543     579 ..     289     325 ..     202     349 .. 0.82

  Alignments for each domain:
  == domain 1    score: 7.0 bits;  conditional E-value: 0.0002
   TIGR00990 555 qekvdealklferaaelarteeel 578
                  ++v+ a+ +fe+  +la+t +e+
  MMETSP1137-20121227|9166_1 131 LGDVTTAISYFEKLNNLAQTSGEK 154
                 489*******************98 PP

  == domain 2    score: 11.1 bits;  conditional E-value: 1.2e-05
   TIGR00990 543 iavitlaqlllqqekvdealklferaaelarteeelv 579
                  a  +l  l  qq++ ++a+ ++er  elar ++++v
  MMETSP1137-20121227|9166_1 289 EACCALGVLYNQQGDYVNAVFFLERFFELARSMGDRV 325
                 35667788999***********************998 PP

>> TIGR02795  tol_pal_ybgF: tol-pal system protein YbgF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.0      0.08   1.6e+02      80     110 ..      62      92 ..      54      98 .. 0.85
   2 !    5.1   0.0    0.0035       7.2      73     104 ..     115     146 ..     102     160 .. 0.84
   3 !   11.6   0.9   3.4e-05      0.07      36     101 ..     202     273 ..     196     277 .. 0.80
   4 ?    0.9   0.0     0.071   1.5e+02      62      97 ..     274     309 ..     271     317 .. 0.64

  Alignments for each domain:
  == domain 1    score: 0.7 bits;  conditional E-value: 0.08
   TIGR02795  80 lklgeslqelgqkekAkktlqevikrYPkss 110
                 l ++e++ + g++++  + ++++++ +++ +
  MMETSP1137-20121227|9166_1  62 LSQAEVARRRGDTKAVYAAYEQLAELFSELA 92 
                 7789999999*************99998765 PP

  == domain 2    score: 5.1 bits;  conditional E-value: 0.0035
   TIGR02795  73 ekapdallklgeslqelgqkekAkktlqevik 104
                 e  ++a+  lg++ q+lg+ ++A ++++++ +
  MMETSP1137-20121227|9166_1 115 EGEAKAMRALGVAHQALGDVTTAISYFEKLNN 146
                 56688999*******************99865 PP

  == domain 3    score: 11.6 bits;  conditional E-value: 3.4e-05
   TIGR02795  36 tlapnAqYwlGealya...kkkykdAaka...flevvkkypksekapdallklgeslqelgqkekAkktlqe 101
                 +++  A++ lG+a  +    +++++A ++   +l++ ++ +++e    a + l++ +q+l+++++++++lq+
  MMETSP1137-20121227|9166_1 202 SMVSKAHFMLGQAHEKlaeMSHLNEAVANykpYLTLCEQAEDNEGQGAACFALARTYQRLENHSTSQQYLQR 273
                 56789******99655111566788887712256888999999**************************996 PP

  == domain 4    score: 0.9 bits;  conditional E-value: 0.071
   TIGR02795  62 flevvkkypksekapdallklgeslqelgqkekAkk 97 
                 +l++ ++  k +  ++a   lg++++++g+  +A  
  MMETSP1137-20121227|9166_1 274 YLQLAEATGKPSSQAEACCALGVLYNQQGDYVNAVF 309
                 666666666666677777777777777776666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (377 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       150  (0.0365675); expected 82.0 (0.02)
Passed bias filter:                      100  (0.0243784); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.31u 0.17s 00:00:00.48 Elapsed: 00:00:00.41
# Mc/sec: 1213.66
//
Query:       MMETSP1137-20121227|9167_1  [L=332]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (332 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       132  (0.0321794); expected 82.0 (0.02)
Passed bias filter:                      115  (0.0280351); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.14s 00:00:00.40 Elapsed: 00:00:00.42
# Mc/sec: 1043.34
//
Query:       MMETSP1137-20121227|9168_1  [L=318]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (318 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        76  (0.0185275); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.12s 00:00:00.38 Elapsed: 00:00:00.39
# Mc/sec: 1076.22
//
Query:       MMETSP1137-20121227|9169_1  [L=172]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0016   15.1   1.6     0.0018   14.9   1.1    1.3  1  TIGR00786 dctM: TRAP transporter, DctM subunit


Domain annotation for each model (and alignments):
>> TIGR00786  dctM: TRAP transporter, DctM subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   1.1   4.4e-07    0.0018     163     229 ..      69     134 ..      37     152 .. 0.82

  Alignments for each domain:
  == domain 1    score: 14.9 bits;  conditional E-value: 4.4e-07
   TIGR00786 163 lllalslmltillvakrkglaaaekaslrqvlkavrksiwaLllivlviggifsGiftpteaaavaa 229
                 l  +++l + ++  a   g++aa+ ++lr  l+++ +    L+l +l +ggi +G++t t +aava 
  MMETSP1137-20121227|9169_1  69 LVCGALLSIFTMGLAF-MGFKAARLQQLRPPLTMFYQGCLLLMLLFLALGGICAGTATITTSAAVAY 134
                 4444444444444443.45666777788888999*******************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (172 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       120  (0.029254); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.17u 0.17s 00:00:00.34 Elapsed: 00:00:00.55
# Mc/sec: 412.77
//
Query:       MMETSP1137-20121227|9170_1  [L=262]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.7e-28   96.4   0.0    3.7e-28   95.9   0.0    1.1  1  TIGR00399 metG_C_term: methionine--tRNA ligase, beta subunit
    3.3e-12   44.2   0.0    4.7e-12   43.7   0.0    1.2  1  TIGR02222 chap_CsaA: export-related chaperone CsaA
    6.3e-08   29.1   0.0    8.7e-08   28.7   0.0    1.1  1  TIGR00472 pheT_bact: phenylalanine--tRNA ligase, beta subunit


Domain annotation for each model (and alignments):
>> TIGR00399  metG_C_term: methionine--tRNA ligase, beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.9   0.0   2.7e-31   3.7e-28      30     138 ..      91     202 ..      69     203 .. 0.89

  Alignments for each domain:
  == domain 1    score: 95.9 bits;  conditional E-value: 2.7e-31
   TIGR00399  30 kkeeitiddfekvdlrvakvkkaerveksdkLlkLklDlGeek.rqvvsGiaeaYt.peeLvgkkvivvaNLkPaKlfGvkSeGmilaaeddgk.dlallspdkevkaGerv 138
                 +  e +i  f+k+d+rv+++ +a + ++s+kL   k+D+Ge + r + sGi+++Y   ++L+gk v+vv+NLk aKl Gv+S+Gm+l a +++k ++  ++p +e+ +Gerv
  MMETSP1137-20121227|9170_1  91 APAEAEIPPFAKLDVRVGRILEAWEHPDSEKLWCEKIDVGEPEpRXIASGIRAYYAtKDDLEGKAVLVVCNLKAAKLGGVESNGMVLCASSEDKsKVEFIEPPAEAAPGERV 202
                 345789999********************************999***********9899****************************998777669***************9 PP

>> TIGR02222  chap_CsaA: export-related chaperone CsaA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.7   0.0   3.4e-15   4.7e-12       4     106 ..     100     202 ..      97     203 .. 0.88

  Alignments for each domain:
  == domain 1    score: 43.7 bits;  conditional E-value: 3.4e-15
   TIGR02222   4 fekvdlrvGriveaedfpkarkPayklkvdlGeelGvkkssaqitkly.kkeelvgrlvvavvnfppkriaglksevlvlGvi.deegevvllqpdrevklGtkv 106
                 f+k+d+rvGri+ea ++p++ k  +  k+d+G e   +  ++ i + y +k++l g+ v++v+n+ + +++g++s+ +vl +  +++ +v +++p  e   G++v
  MMETSP1137-20121227|9170_1 100 FAKLDVRVGRILEAWEHPDSEKL-WCEKIDVG-EPEPRXIASGIRAYYaTKDDLEGKAVLVVCNLKAAKLGGVESNGMVLCASsEDKSKVEFIEPPAEAAPGERV 202
                 9*******************996.5669****.66677778888888846899**************************9876267889**********999998 PP

>> TIGR00472  pheT_bact: phenylalanine--tRNA ligase, beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.7   0.0   6.3e-11   8.7e-08      34     125 ..      94     182 ..      91     199 .. 0.89

  Alignments for each domain:
  == domain 1    score: 28.7 bits;  conditional E-value: 6.3e-11
   TIGR00472  34 eeveelkkslkgvvvGkvlevekhPnadkLkvckVdigekellqivcgaknveagkkVvvAlegAkLpnglkIkksklrGveSeGM.lCSleE 125
                 e+ ++  ++l+ v vG++le  +hP+++kL   k+d+ge e++ i +g +   a k     leg  +     +k++kl GveS+GM lC+++E
  MMETSP1137-20121227|9170_1  94 EAEIPPFAKLD-VRVGRILEAWEHPDSEKLWCEKIDVGEPEPRXIASGIRAYYATKD---DLEGKAVLVVCNLKAAKLGGVESNGMvLCASSE 182
                 66667777887.************************************999988876...57886666679***************6698887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (262 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        76  (0.0185275); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.23u 0.12s 00:00:00.35 Elapsed: 00:00:00.39
# Mc/sec: 886.70
//
Query:       MMETSP1137-20121227|9171_1  [L=166]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (166 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        60  (0.014627); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.13s 00:00:00.30 Elapsed: 00:00:00.31
# Mc/sec: 706.78
//
Query:       MMETSP1137-20121227|9172_1  [L=211]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (211 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        83  (0.020234); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.17s 00:00:00.37 Elapsed: 00:00:00.39
# Mc/sec: 714.09
//
Query:       MMETSP1137-20121227|9173_1  [L=286]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (286 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       128  (0.0312043); expected 82.0 (0.02)
Passed bias filter:                      108  (0.0263286); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.17s 00:00:00.43 Elapsed: 00:00:00.85
# Mc/sec: 444.10
//
Query:       MMETSP1137-20121227|9174_1  [L=111]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (111 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        30  (0.00731351); expected 82.0 (0.02)
Passed bias filter:                       25  (0.00609459); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.13s 00:00:00.26 Elapsed: 00:00:00.28
# Mc/sec: 505.20
//
Query:       MMETSP1137-20121227|9175_1  [L=791]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (791 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       159  (0.0387616); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.48u 0.15s 00:00:00.63 Elapsed: 00:00:00.72
# Mc/sec: 1450.05
//
Query:       MMETSP1137-20121227|9176_1  [L=254]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.8e-19   66.7  15.0    2.6e-18   64.6   8.3    2.7  2  TIGR01571 A_thal_Cys_rich: uncharacterized Cys-rich domain


Domain annotation for each model (and alignments):
>> TIGR01571  A_thal_Cys_rich: uncharacterized Cys-rich domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.0     0.051   2.1e+02      42      71 ..      13      42 ..       5      46 .. 0.82
   2 !   64.6   8.3   6.4e-22   2.6e-18       2     104 ..      72     238 ..      71     239 .. 0.93

  Alignments for each domain:
  == domain 1    score: 0.6 bits;  conditional E-value: 0.051
   TIGR01571 42 cllaglllililallgeigllytgavRkkl 71
                c++  + ++ +lal + +++l ++ vR+++
  MMETSP1137-20121227|9176_1 13 CATDAIAAAFLLALAFALASLRLCGVRTQT 42
                777779999999999999999999999986 PP

  == domain 2    score: 64.6 bits;  conditional E-value: 6.4e-22
   TIGR01571   2 eWetglldcleDislcllglfcpcvlfgkiaerlgtfaeecllag.lllililallge..................................................................igllytgavRkklrkkyklqgaiceDflvhlfcclCalcQevrelk 104
                 +W++g ++c +++ +c l+++cpcv+ g + ++++  +e+c+ +  + ++ ++ l +                                                                    +++++   R+ +rk+y++ g +  Dfl h++c++C+l+ e+re++
  MMETSP1137-20121227|9176_1  72 NWSSGTFSCHRNVASCSLSCCCPCVQYGFNQRIAS--HESCVKWAtIWMVPMVLL-FIlfhtldspsvsaeqlmlqadyaadaaaakaarhashggadrdspkatslltphkqlvlvflflgmaATGVVGAIGRSRIRKRYNISGGMLNDFLCHCCCHCCSLAREAREVR 238
                 8********************************99..999999995655555433.334679**********************************************************9998778899999***********************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (254 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       186  (0.0453437); expected 82.0 (0.02)
Passed bias filter:                      124  (0.0302292); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.24u 0.18s 00:00:00.42 Elapsed: 00:00:00.40
# Mc/sec: 838.13
//
Query:       MMETSP1137-20121227|9178_1  [L=257]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.3e-06   24.0   0.1    4.4e-06   23.6   0.1    1.1  1  TIGR00959 ffh: signal recognition particle protein


Domain annotation for each model (and alignments):
>> TIGR00959  ffh: signal recognition particle protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.6   0.1   1.1e-09   4.4e-06     317     426 ..     107     219 ..      96     221 .. 0.79

  Alignments for each domain:
  == domain 1    score: 23.6 bits;  conditional E-value: 1.1e-09
   TIGR00959 317 klaeklakeefdleDlleqlrqikklGslskllkmlPglgkvkksekdldedekklkrieaiissmtkeErknpkiln..........asRkkRiakGsGtsvsdvnklikefeqakklm 426
                 +l  + +++e++++D++++ +++ ++         +Pg+   k +e+++ e+ +k+++ + i++ m  eE+++p +l             R +R+ak sG+  ++v  ++ +fe +++  
  MMETSP1137-20121227|9178_1 107 DLDMRAQSGELTFKDFITMSEAFLQMDG------KMPGMP-GKLTESQIAETRSKFEKHKKIVDVMLDEEKADPVLLIedlkaggatpGPRIQRLAKASGQPETEVALFLMQFEGMREST 219
                 5667778888999999998888888743......356665.36788999999**********************998423323333334599***********************99865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (257 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       120  (0.029254); expected 82.0 (0.02)
Passed bias filter:                       96  (0.0234032); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.24u 0.17s 00:00:00.41 Elapsed: 00:00:00.28
# Mc/sec: 1169.70
//
Query:       MMETSP1137-20121227|9179_1  [L=88]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (88 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        38  (0.00926377); expected 82.0 (0.02)
Passed bias filter:                       37  (0.00901999); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.28
# Mc/sec: 400.52
//
Query:       MMETSP1137-20121227|9180_1  [L=316]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (316 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       157  (0.038274); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.15s 00:00:00.40 Elapsed: 00:00:00.38
# Mc/sec: 1097.59
//
Query:       MMETSP1137-20121227|9181_1  [L=317]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.3e-82  273.2   3.2    6.1e-82  273.1   2.2    1.0  1  TIGR02997 Sig70-cyanoRpoD: RNA polymerase sigma factor, cyanobacterial RpoD-like family
    6.6e-62  207.0   0.8    5.3e-61  204.1   0.2    1.9  2  TIGR02393 RpoD_Cterm: RNA polymerase sigma factor RpoD
    1.6e-56  189.8   7.0      2e-54  182.9   2.1    2.2  2  TIGR02394 rpoS_proteo: RNA polymerase sigma factor RpoS
    2.8e-38  129.7   1.9    2.2e-34  117.0   0.6    2.0  2  TIGR02980 SigBFG: RNA polymerase sigma-70 factor, sigma-B/F/G subfamily
    1.3e-35  121.2   1.9    1.5e-32  111.2   0.3    2.1  2  TIGR02392 rpoH_proteo: alternative sigma factor RpoH
    5.7e-34  115.8   0.2      7e-31  105.7   0.0    2.0  2  TIGR02885 spore_sigF: RNA polymerase sigma-F factor
    7.3e-31  104.8   2.2    7.3e-31  104.8   1.5    1.7  2  TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family
    7.9e-30  102.1   2.1    1.2e-25   88.4   0.7    2.1  2  TIGR02479 FliA_WhiG: RNA polymerase sigma factor, FliA/WhiG family
    9.7e-26   88.5   0.2    1.2e-15   55.4   0.0    2.2  2  TIGR02835 spore_sigmaE: RNA polymerase sigma-E factor
    2.5e-25   87.2   0.2    1.8e-14   51.7   0.0    2.8  3  TIGR02846 spore_sigmaK: RNA polymerase sigma-K factor
    4.7e-23   79.8   0.2    2.3e-22   77.5   0.1    1.9  2  TIGR02850 spore_sigG: RNA polymerase sigma-G factor
    3.6e-18   63.8   0.0    4.9e-18   63.3   0.0    1.2  1  TIGR02941 Sigma_B: RNA polymerase sigma-B factor
    1.1e-05   23.2   4.2      2e-05   22.3   1.7    2.2  2  TIGR02983 SigE-fam_strep: RNA polymerase sigma-70 factor, sigma-E family
    7.9e-05   20.5   0.0    0.00016   19.4   0.0    1.5  1  TIGR02952 Sig70_famx2: RNA polymerase sigma-70 factor, TIGR02952 family
    0.00038   17.8   0.0    0.00089   16.6   0.0    1.6  1  TIGR02859 spore_sigH: RNA polymerase sigma-H factor


Domain annotation for each model (and alignments):
>> TIGR02997  Sig70-cyanoRpoD: RNA polymerase sigma factor, cyanobacterial RpoD-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  273.1   2.2   2.2e-84   6.1e-82       4     298 .]       2     301 ..       1     301 [. 0.95

  Alignments for each domain:
  == domain 1    score: 273.1 bits;  conditional E-value: 2.2e-84
   TIGR02997   4 rlylqeigrvplltaeeeielarqvqellaleekkeeleeqlekepskeelakavdlsekelkkalkqgrrAkeklikanLRLvvsvAkkYqkrglellDLiqeGslGleravekFdptkGykfstyAyWWirqgitraiaeqsrtiRlPiHiteklnklkkvqrelsqklgrepseaelaealeleveqvrellkaarkpvsLdakvGke.....edtelgdlledeeeePeeeveeellkedleellae.LkererevlrlrfGledeeeltlaeigeelnlsrervrqiekkalkklr 298
                  +yl  i+r +lltaeee++lar  q+l++l++k + lee+l+++ps++e++++ +++ +el+++l+ g  A+ekl+ +nLRLvvs+Ak++ + g++l DLiq G++Gl ra+e+F+p++ y+f tyA++Wi+qgi r+i e+s tiRlP ++ + + ++++++r+ls++lgr+++ +ela+al+++  +v ++ +  ++++sLd+   +e      +  l+dll++ +e  e++ve +ll+ +le++l++ L++++r+vlrlr+Gl+d+ ++t++++g   +l+   vrq+ek al++lr
  MMETSP1137-20121227|9181_1   2 AWYLDAISRAELLTAEEELKLARSFQNLVQLQQKMSGLEERLGRKPSAREMSEEFGVPFSELQDQLHAGVAAREKLLISNLRLVVSIAKRFLSSGMSLEDLIQAGNMGLIRAAERFEPERKYRFTTYATYWIKQGIHRCIREESLTIRLPSYLHDFIVRMRQTRRRLSTELGRAATDEELAQALDVSLARVTQINE-LPSTTSLDVDYDSEfrrgsRRRVLSDLLAAPNEDSEAHVEVSLLRAQLEQVLKStLTPQQRDVLRLRYGLDDGVAKTMRDVGAIAGLQPFTVRQLEKTALARLR 301
                 68******************************************************************************************************************************************************************************************99998765.56778888776554222224567*****************************865**********************************************998 PP

>> TIGR02393  RpoD_Cterm: RNA polymerase sigma factor RpoD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.0      0.15        41      86     120 ..      29      63 ..       3      69 .. 0.83
   2 !  204.1   0.2   1.9e-63   5.3e-61       1     237 [.      73     313 ..      73     314 .. 0.92

  Alignments for each domain:
  == domain 1    score: 1.5 bits;  conditional E-value: 0.15
   TIGR02393  86 inklakaerkllqelgrepteeelaeklgleaekv 120
                 + +l++++  l ++lgr+p++ e++e++g++ + +
  MMETSP1137-20121227|9181_1  29 LVQLQQKMSGLEERLGRKPSAREMSEEFGVPFSEL 63 
                 45677778889999*************99876655 PP

  == domain 2    score: 204.1 bits;  conditional E-value: 1.9e-63
   TIGR02393   1 akkklvesnlrlvvsiakkylnrGlsfldliqeGniGllkavekfdykkgykfstyatWWirqaitraiadqartiriPvhlvetinklakaerkllqelgrepteeelaeklgleaekvkeikklakep...vslekpige.eedselgdfiedeevespedaaakellkeeleevle.tlsereekvlklryGledgkektleevgkefnvtrerirqieskalrklrhpskskklkdfl 237
                 a++kl+ snlrlvvsiak++l  G+s+ dliq Gn+Gl++a e+f+ ++ y+f+tyat+Wi+q i r+i + + tir+P +l + i ++ +++r+l  elgr +t+eela++l+++  +v +i++l   +   v  +++ ++      l+d++   + e++e +++ +ll+ +le+vl+ tl++++++vl+lryGl+dg  kt+ +vg   ++    +rq+e+ al +lr+++ +++lk+f+
  MMETSP1137-20121227|9181_1  73 AREKLLISNLRLVVSIAKRFLSSGMSLEDLIQAGNMGLIRAAERFEPERKYRFTTYATYWIKQGIHRCIREESLTIRLPSYLHDFIVRMRQTRRRLSTELGRAATDEELAQALDVSLARVTQINELPSTTsldVDYDSEFRRgSRRRVLSDLLAAPN-EDSEAHVEVSLLRAQLEQVLKsTLTPQQRDVLRLRYGLDDGVAKTMRDVGAIAGLQPFTVRQLEKTALARLRRQKVQEQLKEFI 313
                 789*****************************************************************************************************************99999999986532111444455544234557899998865.566789999************9************************************************************97 PP

>> TIGR02394  rpoS_proteo: RNA polymerase sigma factor RpoS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.5   0.1   0.00099      0.27      17      41 ..       3      27 ..       1      65 [. 0.79
   2 !  182.9   2.1   7.1e-57     2e-54      44     278 ..      70     308 ..      61     312 .. 0.90

  Alignments for each domain:
  == domain 1    score: 8.5 bits;  conditional E-value: 0.00099
   TIGR02394 17 lylreiglkplltaeeelalarral 41
                 yl+ i+++ lltaeeel+lar  +
  MMETSP1137-20121227|9181_1  3 WYLDAISRAELLTAEEELKLARSFQ 27
                6*******************98654 PP

  == domain 2    score: 182.9 bits;  conditional E-value: 7.1e-57
   TIGR02394  44 dvearkkmiesnlrlvvkiakkyvnrGlplldlieeGnlGllkavekfdPerGfrfstyatWWirqtieraimnqartirlPvhvvkelnvvlraarklekkldreasveevaelldkpvedvskllklnekiasldapldeds.....ekslldlladekseePeelvqnedlkeliealla.elnekerevlarrfGlreyekatleevakelgltrervrqiqvealkklkrilereg 278
                  v+ar+k++ snlrlvv+iak+++++G++l dli+ Gn+Gl++a e+f+Per +rf+tyat+Wi+q i r+i + + tirlP ++   +  + +++r+l+ +l+r a+ ee+a++ld ++  v+++ +l  +++sld+  d++      ++ l+dlla   +e+ e++v+ + l+ ++e++l+  l+ ++r+vl  r+Gl +  ++t+ +v++  gl    vrq+   al +l+r   +e 
  MMETSP1137-20121227|9181_1  70 GVAAREKLLISNLRLVVSIAKRFLSSGMSLEDLIQAGNMGLIRAAERFEPERKYRFTTYATYWIKQGIHRCIREESLTIRLPSYLHDFIVRMRQTRRRLSTELGRAATDEELAQALDVSLARVTQINELP-STTSLDVDYDSEFrrgsrRRVLSDLLAAP-NEDSEAHVEVSLLRAQLEQVLKsTLTPQQRDVLRLRYGLDDGVAKTMRDVGAIAGLQPFTVRQLEKTALARLRRQKVQEQ 308
                 579**********************************************************************************999999999*******************************99985.78999999988752111245577777765.4567889999999999999996369************************************************9766655 PP

>> TIGR02980  SigBFG: RNA polymerase sigma-70 factor, sigma-B/F/G subfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.2   0.0   8.8e-05     0.024      79     129 ..      20      69 ..      15      72 .. 0.87
   2 !  117.0   0.6     8e-37   2.2e-34       3     225 ..      72     303 ..      70     305 .. 0.89

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 8.8e-05
   TIGR02980  79 vrvpRrlkelaakikkateeLtqklgrePtveeiaeelevseeevvealea 129
                 ++++R++++l ++++++   L ++lgr+P+++e++ee +v   e    l+a
  MMETSP1137-20121227|9181_1  20 LKLARSFQNL-VQLQQKMSGLEERLGRKPSAREMSEEFGVPFSELQDQLHA 69 
                 7889999988.6899999*********************999988877776 PP

  == domain 2    score: 117.0 bits;  conditional E-value: 8e-37
   TIGR02980   3 eareklvelnlkLvesiarrfrsrgeeleDlvQvgtiGLlkaidrfdlsrgvkFstyavPtivGEikrflRDktwavrvpRrlkelaakikkateeLtqklgrePtveeiaeelevseeevvealeaaksysassldasve.dddgdeialldtlgeedeeleeveeklalkellak.....Ldererrilllrffed....ktQseiaeelGiSQmqvSRlekralkklree 225
                 +arekl+  nl+Lv sia+rf s g +leDl+Q g++GL++a +rf+++r+ +F+tya   i   i+r +R+++ ++r+p  l++  +++++++ +L+++lgr+ t ee+a++l+vs   v+++ e  ++ +++ +d   e      +  l d l++ +e+ e  +e  +l+  l++     L +++r +l lr+  d    kt  ++++  G+    v  lek+al++lr++
  MMETSP1137-20121227|9181_1  72 AAREKLLISNLRLVVSIAKRFLSSGMSLEDLIQAGNMGLIRAAERFEPERKYRFTTYATYWIKQGIHRCIREESLTIRLPSYLHDFIVRMRQTRRRLSTELGRAATDEELAQALDVSLARVTQINELPST-TSLDVDYDSEfRRGSRRRVLSDLLAAPNEDSEAHVEVSLLRAQLEQvlkstLTPQQRDVLRLRYGLDdgvaKTMRDVGAIAGLQPFTVRQLEKTALARLRRQ 303
                 689************************************************************************************************************************9999888.677777777766777888999****9888888777766666655432222499***********765344489999************************87 PP

>> TIGR02392  rpoH_proteo: alternative sigma factor RpoH
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.5   0.0   0.00054      0.15       5      32 ..       3      30 ..       1      39 [. 0.88
   2 !  111.2   0.3   5.4e-35   1.5e-32      32     266 ..      69     302 ..      51     306 .. 0.87

  Alignments for each domain:
  == domain 1    score: 9.5 bits;  conditional E-value: 0.00054
   TIGR02392  5 aYiravnklplLeaeeekelakrlreek 32
                 Y+ a+++ +lL+aeee +la+++++  
  MMETSP1137-20121227|9181_1  3 WYLDAISRAELLTAEEELKLARSFQNLV 30
                69*********************99755 PP

  == domain 2    score: 111.2 bits;  conditional E-value: 5.4e-35
   TIGR02392  32 kdleaakkLvlshLrlvvkiargYrgYGLpqadliqegniGLmkavkrfdPergvRlvsfavhWikaeiheyilrnWrlvkvattkaqrkLFFnlrkakkklkgalseeev.eavaeeLgvseeevlemesRlsgkDlsleaeseededeseelieyLadkeseaeeeleeeeeeekqkeklkeale.kldersrriieaRwlede..kltLeelaaeygvsaeRvRqiekkalkklka 266
                 + + a +kL++s+Lrlvv+ia+++ + G++  dliq gn+GL++a  rf+Per  R+ ++a +Wik  ih  i  +   +++      +    ++r+++++l+++l      e++a+ L+vs + v+++++  s+  +sl+++ +++   + +  ++L+d    ++e  e + e +  +++l++ l+ +l  ++r++++ R   d+  ++t++++ a  g+    vRq+ek+al +l++
  MMETSP1137-20121227|9181_1  69 AGVAAREKLLISNLRLVVSIAKRFLSSGMSLEDLIQAGNMGLIRAAERFEPERKYRFTTYATYWIKQGIHRCIREESLTIRLP--SYLHDFIVRMRQTRRRLSTELGRAATdEELAQALDVSLARVTQINELPST--TSLDVDYDSEF-RRGSRRRVLSDLLAAPNEDSEAHVEVSLLRAQLEQVLKsTLTPQQRDVLRLRYGLDDgvAKTMRDVGAIAGLQPFTVRQLEKTALARLRR 302
                 45678899***************************************************************987776666665..56678999*********988876654278****************98887..78888887754.5577888888888888888888888899999999999736999*********966665799**************************997 PP

>> TIGR02885  spore_sigF: RNA polymerase sigma-F factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.7   0.0    0.0011      0.29      82     130 ..      16      63 ..       8      72 .. 0.84
   2 !  105.7   0.0   2.6e-33     7e-31      10     229 ..      71     302 ..      63     304 .. 0.88

  Alignments for each domain:
  == domain 1    score: 8.7 bits;  conditional E-value: 0.0011
   TIGR02885  82 ddgiikvsrslkelakkirkekeelakklerePtieelaealglekeev 130
                  ++ +k++rs ++l  +++++   l ++l+r+P+  e++e+ g+   e+
  MMETSP1137-20121227|9181_1  16 AEEELKLARSFQNLV-QLQQKMSGLEERLGRKPSAREMSEEFGVPFSEL 63 
                 567899*****9996.68888899*****************99876665 PP

  == domain 2    score: 105.7 bits;  conditional E-value: 2.6e-33
   TIGR02885  10 keardklveenlrlvssivkrflnrGyeledlfqiGciGlvkaidkfdlsydvkfstyavPliiGeikrflrddg.iikvsrslkelakkirkekeelakklerePtieelaealglekeevvaale..sakslqslydtvheddgdpillldkiadegeeesdlle....kialkealkk.ldererqiillryfkd....ktqtevakilGisqvqvsrlekkvlkklke 229
                  +ar+kl+ +nlrlv+si+krfl +G+ ledl q G +Gl++a ++f+ + + +f+tya   i   i+r +r++  +i++   l +   ++r+++ +l+++l+r+ t eela+al+++   v +  e  s++sl+  yd+ ++    + +l d +a  +e+++  +e    +  l+++lk+ l++++r ++ lry  d    kt  +v  i G+    v +lek +l +l++
  MMETSP1137-20121227|9181_1  71 VAAREKLLISNLRLVVSIAKRFLSSGMSLEDLIQAGNMGLIRAAERFEPERKYRFTTYATYWIKQGIHRCIREESlTIRLPSYLHDFIVRMRQTRRRLSTELGRAATDEELAQALDVSLARVTQINElpSTTSLDVDYDSEFRRGSRRRVLSDLLAAPNEDSEAHVEvsllRAQLEQVLKStLTPQQRDVLRLRYGLDdgvaKTMRDVGAIAGLQPFTVRQLEKTALARLRR 302
                 689*********************************************************************997469****************************************99997655433999999********99999999999988866666665522223445566653499***********876566689999**********************997 PP

>> TIGR02937  sigma70-ECF: RNA polymerase sigma factor, sigma-70 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.1       2.5   6.8e+02     129     150 ..      42      63 ..      12      69 .. 0.62
   2 !  104.8   1.5   2.7e-33   7.3e-31       2     164 ..      73     303 ..      72     304 .. 0.89

  Alignments for each domain:
  == domain 1    score: -2.4 bits;  conditional E-value: 2.5
   TIGR02937 129 ryleglslkeiAeelgisqetv 150
                 r   + s +e++ee+g++ +  
  MMETSP1137-20121227|9181_1  42 RLGRKPSAREMSEEFGVPFSEL 63 
                 3344457778888888765555 PP

  == domain 2    score: 104.8 bits;  conditional E-value: 2.7e-33
   TIGR02937   2 aleqliesylplvykvarkylgdsldaeDlvqegflglikaldkfdpe..ssfktyaysvirnsiidalr....................rkrelkvtneveiskekeeeeledeed.........................................rpeeqeeaeelrerleqale.kLperereilklryle....glslkeiAeelgisqetvsrilkraikkLkkk 164
                 a+e+l+ s+l+lv+++a+++l++++ +eDl+q g++gli+a ++f+pe  ++f tya+++i++ i + +r                    + r++ +t ++ + +++e ++++d ++                                         + e ++e + lr++leq+l+ +L++++r++l+lry       +++++++ + g+++ tv++++k a+++L+++
  MMETSP1137-20121227|9181_1  73 AREKLLISNLRLVVSIAKRFLSSGMSLEDLIQAGNMGLIRAAERFEPErkYRFTTYATYWIKQGIHRCIReesltirlpsylhdfivrmrQTRRRLSTELGRAATDEELAQALDVSLarvtqinelpsttsldvdydsefrrgsrrrvlsdllaapneDSEAHVEVSLLRAQLEQVLKsTLTPQQRDVLRLRYGLddgvAKTMRDVGAIAGLQPFTVRQLEKTALARLRRQ 303
                 89******************************************************************99666666677777777766666666666666777666888888887779999999999999999999999999999999999999999999******************9**************66555577***************************986 PP

>> TIGR02479  FliA_WhiG: RNA polymerase sigma factor, FliA/WhiG family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.8   0.0   5.6e-05     0.015      80     122 ..      27      69 ..      21      80 .. 0.86
   2 !   88.4   0.7   4.3e-28   1.2e-25      18     222 ..      91     303 ..      77     305 .. 0.82

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 5.6e-05
   TIGR02479  80 kkakkleeaieelearlgrepteeeiaeelgldlkevrkalee 122
                 ++  +l++ ++ le+rlgr+p+  e++ee g+  +e+++ l++
  MMETSP1137-20121227|9181_1  27 QNLVQLQQKMSGLEERLGRKPSAREMSEEFGVPFSELQDQLHA 69 
                 578899******************************9988765 PP

  == domain 2    score: 88.4 bits;  conditional E-value: 4.3e-28
   TIGR02479  18 vklpssveleDliqaGmlgLldaierydeekgvkFetyavlRirGailDeLRkldwv...prslrkkakkleeaieelearlgrepteeeiaeelgldlkevrkaleeinaesl.vsldellesedeelsladliedkksedpeeelereelkeklaeaiek.LsereklvlsLyYeee....LnlkEigevLelsesRvsQlhskalkkLrak 222
                   l+s ++leDliqaG +gL+ a+er+++e+  +F+tya+++i+  i   +R+   +   p  l++ + ++++++++l+ +lgr++t+ee+a++l+++l  v ++ e  +++sl v +d   + ++ + ++ + + +  +ed e ++e   l+ +l++++++ L+ + + vl L Y  +     +++++g++ +l    v Ql + al +Lr++
  MMETSP1137-20121227|9181_1  91 RFLSSGMSLEDLIQAGNMGLIRAAERFEPERKYRFTTYATYWIKQGIHRCIREESLTirlPSYLHDFIVRMRQTRRRLSTELGRAATDEELAQALDVSLARVTQINELPSTTSLdVDYDSEFRRGSRR-RVLSDLLAAPNEDSEAHVEVSLLRAQLEQVLKStLTPQQRDVLRLRYGLDdgvaKTMRDVGAIAGLQPFTVRQLEKTALARLRRQ 303
                 346789***********************************************9986222667999999***********************************996555554423344444444333.4555566666779999***************854*************644222258**************************975 PP

>> TIGR02835  spore_sigmaE: RNA polymerase sigma-E factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.4   0.0   4.5e-18   1.2e-15      44     125 ..      65     145 ..      60     156 .. 0.86
   2 !   30.7   0.0   1.6e-10   4.5e-08     145     229 ..     218     303 ..     188     308 .. 0.84

  Alignments for each domain:
  == domain 1    score: 55.4 bits;  conditional E-value: 4.5e-18
   TIGR02835  44 eklekgdeavksiliernlrlvvyiarkfentginiedlvsigtiglikavntfdpekkiklatyasrcieneilmylrrnn 125
                 ++l+ g + +++ l+  nlrlvv ia++f  +g+++edl+  g +gli+a + f+pe+k +++tya+  i++ i   +r ++
  MMETSP1137-20121227|9181_1  65 DQLHAGVA-AREKLLISNLRLVVSIAKRFLSSGMSLEDLIQAGNMGLIRAAERFEPERKYRFTTYATYWIKQGIHRCIREES 145
                 56666655.55666668**************************************************999999988877665 PP

  == domain 2    score: 30.7 bits;  conditional E-value: 1.6e-10
   TIGR02835 145 elllsdvlgtdsdivykeleeevdrellkkalk.klndrekkilelrfgladgeektqkevadllgisqsyisrlekrilkrlkke 229
                   +lsd+l + ++    ++e  + r  l++ lk  l+ +++ +l+lr+gl dg  kt ++v  + g+    + +lek  l rl+++
  MMETSP1137-20121227|9181_1 218 RRVLSDLLAAPNEDSEAHVEVSLLRAQLEQVLKsTLTPQQRDVLRLRYGLDDGVAKTMRDVGAIAGLQPFTVRQLEKTALARLRRQ 303
                 5689******9999999999999999888888636999******************************999************986 PP

>> TIGR02846  spore_sigmaK: RNA polymerase sigma-K factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.7   0.0   6.4e-17   1.8e-14      46     133 ..      70     158 ..      51     166 .. 0.87
   2 ?   -0.3   0.0      0.49   1.4e+02     187     215 ..     168     196 ..     159     199 .. 0.82
   3 !   31.7   0.0   8.1e-11   2.2e-08     144     225 ..     221     303 ..     212     305 .. 0.94

  Alignments for each domain:
  == domain 1    score: 51.7 bits;  conditional E-value: 6.4e-17
   TIGR02846  46 deearnvliernlrlvahivkkfentgkdvddlisiGtiGlikaidsfdtekGtklatyaarcieneilmllralk.ktkgevslqdpi 133
                    ar++l+  nlrlv  i k+f ++g  ++dli  G +Gli+a + f++e+  +++tya+  i+  i   +r++    +   +l+d i
  MMETSP1137-20121227|9181_1  70 GVAAREKLLISNLRLVVSIAKRFLSSGMSLEDLIQAGNMGLIRAAERFEPERKYRFTTYATYWIKQGIHRCIREESlTIRLPSYLHDFI 158
                 4689****************************************************************999998761346666666655 PP

  == domain 2    score: -0.3 bits;  conditional E-value: 0.49
   TIGR02846 187 yGlkdgeektqreiakklgisrsyvsrie 215
                    + g+  t  e+a+ l++s + v++i+
  MMETSP1137-20121227|9181_1 168 LSTELGRAATDEELAQALDVSLARVTQIN 196
                 55566788999**********99999986 PP

  == domain 3    score: 31.7 bits;  conditional E-value: 8.1e-11
   TIGR02846 144 lldilssdedsvleavekklevkklkkkl.kvlkerekevielryGlkdgeektqreiakklgisrsyvsriekkalkkllke 225
                 l d+l + +++   +ve +l   +l++ l ++l++++++v++lryGl dg  kt r++  + g+    v ++ek al +l ++
  MMETSP1137-20121227|9181_1 221 LSDLLAAPNEDSEAHVEVSLLRAQLEQVLkSTLTPQQRDVLRLRYGLDDGVAKTMRDVGAIAGLQPFTVRQLEKTALARLRRQ 303
                 7799*************************999**********************************************99875 PP

>> TIGR02850  spore_sigG: RNA polymerase sigma-G factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.0   0.0      0.37     1e+02     108     153 ..      19      63 ..      10      69 .. 0.71
   2 !   77.5   0.1   8.2e-25   2.3e-22      32     252 ..      70     302 ..      60     304 .. 0.80

  Alignments for each domain:
  == domain 1    score: 0.0 bits;  conditional E-value: 0.37
   TIGR02850 108 pirvsrslrdiaykalqvrdklvskkskeptvseiakelevpkeev 153
                  ++++rs++++     q    l ++  ++p+++e+++e++vp  e+
  MMETSP1137-20121227|9181_1  19 ELKLARSFQNLVQ-LQQKMSGLEERLGRKPSAREMSEEFGVPFSEL 63 
                 5666777776643.33444556778889************998876 PP

  == domain 2    score: 77.5 bits;  conditional E-value: 8.2e-25
   TIGR02850  32 dkeareklingnlrlvlsviqrfnnrgeyvddlfqvgcigllksidnfdlsqnvkfstyavpmiigeirrylrdnn.pirvsrslrdiaykalqvrdklvskkskeptvseiakelevpkeevvfaldaiqdpvsl...fepiyndggdpiyvmdqisdeknkdeswleeialkealkr.....lnereklilklrf..feg..ktqmevaeeigisqaqvsrlekaalkqlkk 252
                  ++arekl+ +nlrlv+s+ +rf   g + +dl+q g +gl+++ + f+ +++ +f+tya   i   i r +r+++ +ir+   l d   +  q r +l ++  +  t +e+a+ l+v+   v   ++ +    sl   ++  ++ g     + d ++  ++  e  +e   l+  l++     l+ +++ +l+lr+   +g  kt  +v    g+    v +lek+al +l++
  MMETSP1137-20121227|9181_1  70 GVAAREKLLISNLRLVVSIAKRFLSSGMSLEDLIQAGNMGLIRAAERFEPERKYRFTTYATYWIKQGIHRCIREESlTIRLPSYLHDFIVRMRQTRRRLSTELGRAATDEELAQALDVSLARVT-QINELPSTTSLdvdYDSEFRRGSRRRVLSDLLAAPNEDSEAHVEVSLLRAQLEQvlkstLTPQQRDVLRLRYglDDGvaKTMRDVGAIAGLQPFTVRQLEKTALARLRR 302
                 478**********************************************************************87648****************************************998864.45666666666333666777766666666666655555555666555565565422223566778888888732455448888999999999999*********99987 PP

>> TIGR02941  Sigma_B: RNA polymerase sigma-B factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.3   0.0   1.8e-20   4.9e-18      22     251 ..      63     302 ..      43     306 .. 0.82

  Alignments for each domain:
  == domain 1    score: 63.3 bits;  conditional E-value: 1.8e-20
   TIGR02941  22 lqkn..kneeaqeklvkkykdlvesiaykyskgsaihedlvqvGmvGllgairrydlsigkafeafaiptiiGeikrylrdktwsvhvprrikelGpkikkavdeltaelqrspkiaeiadrlgvseeevleimemgqsykalsvddkieadsdGstvalldlvG....esedgydqtekrlvlekilp.ilserekeiiecif..ienlsq..ketGerlGisqmhvsrlkrraikklke 251
                 lq++      a+ekl+     lv sia+++  ++   edl+q G +Gl+ a +r+++  + +f ++a   i   i r +r+ + ++ +p  + ++  +++++   l++el r+ +  e+a+ l+vs   v +i e+  s   l vd   e  +      l dl+     +se + +    r  le++l+  l+ +++++++  +   +++++  ++ G   G+    v +l+++a+ +l++
  MMETSP1137-20121227|9181_1  63 LQDQlhAGVAAREKLLISNLRLVVSIAKRFLSSGMSLEDLIQAGNMGLIRAAERFEPERKYRFTTYATYWIKQGIHRCIREESLTIRLPSYLHDFIVRMRQTRRRLSTELGRAATDEELAQALDVSLARVTQINELP-STTSLDVDYDSEFRRGSRRRVLSDLLAapneDSEAHVEVSLLRAQLEQVLKsTLTPQQRDVLRLRYglDDGVAKtmRDVGAIAGLQPFTVRQLEKTALARLRR 302
                 5554324457899**********************************************************************************************************************999986.5577888888887665555555577652111334444555556678888853688999***988873245665433899*********************986 PP

>> TIGR02983  SigE-fam_strep: RNA polymerase sigma-70 factor, sigma-E family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0       1.1     3e+02     128     141 ..     177     190 ..     151     199 .. 0.64
   2 !   22.3   1.7   7.5e-08     2e-05      74     160 ..     217     306 ..     207     308 .. 0.74

  Alignments for each domain:
  == domain 1    score: -1.0 bits;  conditional E-value: 1.1
   TIGR02983 128 seeevAevlGisvG 141
                 ++ee A++l++s +
  MMETSP1137-20121227|9181_1 177 TDEELAQALDVSLA 190
                 45556666666555 PP

  == domain 2    score: 22.3 bits;  conditional E-value: 7.5e-08
   TIGR02983  74 RrrrveelateelPdaeaedaaadeaeraallealr.rLparqRavvVLryledlseeevAevlGisvG....tVksrlsralarLreelee 160
                 Rrr +  l   + P+++ e + +   +ra+l + l+  L+++qR v+ Lry  d  ++ + + +G+ +G    tV+   + alarLr++  +
  MMETSP1137-20121227|9181_1 217 RRRVLSDL--LAAPNEDSEAHVEVSLLRAQLEQVLKsTLTPQQRDVLRLRYGLDDGVAKTMRDVGAIAGlqpfTVRQLEKTALARLRRQKVQ 306
                 23322222..2458888888888899*********846***************98877666655555554444**************98765 PP

>> TIGR02952  Sig70_famx2: RNA polymerase sigma-70 factor, TIGR02952 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.0     6e-07   0.00016      96     169 ..     226     303 ..     206     304 .. 0.72

  Alignments for each domain:
  == domain 1    score: 19.4 bits;  conditional E-value: 6e-07
   TIGR02952  96 llsaepsPeeavlkelaneklleavk.kLtpkqqeviaLrFaqnLkia....evarilgktegavkalqfravkkLkrl 169
                 ++ +e+  e  v+++l  ++l +++k  Ltp+q++v+ Lr++ +  +a    +v  i g ++ +v++l   a++ L+r+
  MMETSP1137-20121227|9181_1 226 AAPNED-SEAHVEVSLLRAQLEQVLKsTLTPQQRDVLRLRYGLDDGVAktmrDVGAIAGLQPFTVRQLEKTALARLRRQ 303
                 223333.567799999999999998637*************988655411116778999999999***99999999997 PP

>> TIGR02859  spore_sigH: RNA polymerase sigma-H factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0   3.3e-06   0.00089      20      89 ..      73     142 ..      61     158 .. 0.81

  Alignments for each domain:
  == domain 1    score: 16.6 bits;  conditional E-value: 3.3e-06
   TIGR02859  20 aleyliekyknfvkakarsyflvgadkediiqegmiglykairdykedklssfkafaelcvtrqiitaik 89 
                 a e l+    ++v + a+ ++  g   ed+iq g +gl +a   +++++   f ++a   + + i   i+
  MMETSP1137-20121227|9181_1  73 AREKLLISNLRLVVSIAKRFLSSGMSLEDLIQAGNMGLIRAAERFEPERKYRFTTYATYWIKQGIHRCIR 142
                 44444444556788999****************************************9999888877776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (317 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       174  (0.0424183); expected 82.0 (0.02)
Passed bias filter:                      140  (0.0341297); expected 82.0 (0.02)
Passed Vit filter:                        19  (0.00463189); expected 4.1 (0.001)
Passed Fwd filter:                        15  (0.00365675); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.44u 0.14s 00:00:00.58 Elapsed: 00:00:00.56
# Mc/sec: 734.04
//
Query:       MMETSP1137-20121227|9182_1  [L=279]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (279 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        88  (0.0214529); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.11s 00:00:00.34 Elapsed: 00:00:00.37
# Mc/sec: 995.27
//
Query:       MMETSP1137-20121227|9183_1  [L=84]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (84 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       120  (0.029254); expected 82.0 (0.02)
Passed bias filter:                      119  (0.0290102); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.13s 00:00:00.28 Elapsed: 00:00:00.30
# Mc/sec: 369.57
//
Query:       MMETSP1137-20121227|9185_1  [L=136]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (136 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       107  (0.0260848); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.15s 00:00:00.32 Elapsed: 00:00:00.51
# Mc/sec: 351.97
//
Query:       MMETSP1137-20121227|9186_1  [L=276]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0011   16.4   0.0     0.0052   14.2   0.0    1.8  2  TIGR00995 3a0901s06TIC22: chloroplast protein import component, Tic22 family


Domain annotation for each model (and alignments):
>> TIGR00995  3a0901s06TIC22: chloroplast protein import component, Tic22 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.0   1.3e-06    0.0052      66     147 ..      19      97 ..      13     102 .. 0.83
   2 ?   -0.6   0.0     0.043   1.7e+02     177     241 ..     180     245 ..     171     267 .. 0.65

  Alignments for each domain:
  == domain 1    score: 14.2 bits;  conditional E-value: 1.3e-06
   TIGR00995  66 qaltLspeevakiLaGvsvftvsdadnefvlisdadgeksiGllifrqedaeafLaelrkrkkelksqakvvPitLdevvkl 147
                 + l L+ +e+   L Gv+vf v   d+  v   ++dg+ s   ++   e a a L ++ +  +  ++ ++   ++L+ v+ l
  MMETSP1137-20121227|9186_1  19 PLLPLPKNEILEKLDGVPVFAVQSIDGRVVKTEGPDGQLSHCFYLDVDE-ALAALRQMLLDTP--RARVQLGTMSLGAVFSL 97 
                 56789***********************************999988888.8888888777666..44555666777777665 PP

  == domain 2    score: -0.6 bits;  conditional E-value: 0.043
   TIGR00995 177 fdGvPvfqsel..Lvvkkknkryi...Pvylskedieqelskfkreskavadsqvidvgsledvlkklel 241
                 ++ +P+f  +   L v + + +++   P+++ + d+++      r+ +++a    i v  l  +  +++ 
  MMETSP1137-20121227|9186_1 180 MGAIPLFGCDElrLAVAQPDGQVVaarPLFFTRADLRK----AWRALEGTAPLTGIRVTDLRTITWQMQA 245
                 67789998853136788888887666699999988765....4455555555556666666666666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (276 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        56  (0.0136519); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.23u 0.13s 00:00:00.36 Elapsed: 00:00:00.39
# Mc/sec: 934.08
//
Query:       MMETSP1137-20121227|9187_1  [L=276]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (276 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        63  (0.0153584); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.12s 00:00:00.34 Elapsed: 00:00:00.43
# Mc/sec: 847.19
//
Query:       MMETSP1137-20121227|9188_1  [L=387]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.2e-36  121.9   0.0    5.8e-36  121.4   0.0    1.1  1  TIGR01668 YqeG_hyp_ppase: HAD phosphatase, family IIIA
    5.6e-10   37.3   0.0    1.2e-09   36.2   0.0    1.6  1  TIGR01662 HAD-SF-IIIA: HAD hydrolase, family IIIA
    2.6e-07   28.2   0.0    3.7e-07   27.7   0.0    1.2  1  TIGR01452 PGP_euk: phosphoglycolate/pyridoxal phosphate phosphatase family
    5.8e-05   20.8   0.0    9.1e-05   20.2   0.0    1.2  1  TIGR01460 HAD-SF-IIA: HAD hydrolase, family IIA
     0.0049   14.5   0.0      0.012   13.2   0.0    1.6  2  TIGR02253 CTE7: HAD hydrolase, TIGR02253 family
     0.0059   13.9   0.0     0.0092   13.2   0.0    1.2  1  TIGR01459 HAD-SF-IIA-hyp4: HAD hydrolase, TIGR01459 family


Domain annotation for each model (and alignments):
>> TIGR01668  YqeG_hyp_ppase: HAD phosphatase, family IIIA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  121.4   0.0   8.5e-39   5.8e-36       1     165 [.     108     280 ..     108     284 .. 0.94

  Alignments for each domain:
  == domain 1    score: 121.4 bits;  conditional E-value: 8.5e-39
   TIGR01668   1 kfllPdaivkdlaeltiellkkkdikgvvlDkDntlvepdsnevapalkewieelkaa.G.lkllivSNnag......eqrvkalekelgitvlshavKkpgkafrralkem.gltseqvvvvGDrlfTDvllgnrnGsltilveplvhpdeafekrivrrvelallkiLkkkl 165
                 k+llP+  v+d+++l++  l k + +g+v+DkDntl+ p+  ++ p+l+  +++++a+ G  +l+i+SN+ag      +  + a+e++l i+vl+++ Kkp++ f+ +++++  +++  +v++GDrl+TDv+ gn  G+lt++ + l+   e++ +r+ rrve +l+++ ++++
  MMETSP1137-20121227|9188_1 108 KLLLPHLEVQDITNLNWAALHKTGARGLVFDKDNTLTLPYALHLEPKLELPLQNARAVfGpERLAIISNSAGtpddhgGVEADAIEQALAIRVLRRQHKKPRG-FESIEHQFpSCPPATLVMIGDRLLTDVVFGNAHGMLTVYCKKLTGQGEPLVVRVARRVETWLARFFRSRG 280
                 689********************************************************6389*************9999********************987.555555553799****************************************************999875 PP

>> TIGR01662  HAD-SF-IIIA: HAD hydrolase, family IIIA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.2   0.0   1.8e-12   1.2e-09       2     140 ..     134     252 ..     133     253 .. 0.78

  Alignments for each domain:
  == domain 1    score: 36.2 bits;  conditional E-value: 1.8e-12
   TIGR01662   2 lvvlDlDgtLiddvdyvteedeaelypevidalaelkkeGykvvivtNqsgigrgkesveevsekveslleelgvpidvliacphskceyrKpktgmleealkrlneidakesvvvGDavltDleaakrvGlatvlvas 140
                 ++v+D+D+tL+   + ++ + e +l    ++a a       +++i++N+   g+ ++     ++ ve+ + e+++ i vl +        +Kp  + +e++  +++ + ++  v++GD++ltD+ ++++ G+ tv +++
  MMETSP1137-20121227|9188_1 134 GLVFDKDNTLT--LP-YALHLEPKLELPLQNARAVFGP--ERLAIISNSA--GTPDD-----HGGVEADAIEQALAIRVLRRQH------KKP--RGFESIEHQFPSCPPATLVMIGDRLLTDVVFGNAHGMLTVYCKK 252
                 79*********..33.3333333333333333333333..489*******..66556.....8999999999899999998887......788..99************************************998875 PP

>> TIGR01452  PGP_euk: phosphoglycolate/pyridoxal phosphate phosphatase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.7   0.0   5.4e-10   3.7e-07     203     245 ..     206     249 ..     171     260 .. 0.77

  Alignments for each domain:
  == domain 1    score: 27.7 bits;  conditional E-value: 5.4e-10
   TIGR01452 203 Psdfmleyikekl.sidPartlmvGdrletdilfGkdgGlktvl 245
                   +  +e i++++ s  Pa  +m+Gdrl td++fG+ +G+ tv 
  MMETSP1137-20121227|9188_1 206 KKPRGFESIEHQFpSCPPATLVMIGDRLLTDVVFGNAHGMLTVY 249
                 556679999999956788999*********************96 PP

>> TIGR01460  HAD-SF-IIA: HAD hydrolase, family IIA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   0.0   1.3e-07   9.1e-05     203     243 ..     211     250 ..     192     253 .. 0.76

  Alignments for each domain:
  == domain 1    score: 20.2 bits;  conditional E-value: 1.3e-07
   TIGR01460 203 ykaaeellkarakrrkvlmvGDnlrtDvlgAkeaGldslLv 243
                 ++ +e+++   + + +++m+GD+l tDv ++++ G+ +++ 
  MMETSP1137-20121227|9188_1 211 FESIEHQFPSCPPA-TLVMIGDRLLTDVVFGNAHGMLTVYC 250
                 44444444444555.59*********************985 PP

>> TIGR02253  CTE7: HAD hydrolase, TIGR02253 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.1       1.8   1.2e+03       3      13 ..     133     143 ..     132     145 .. 0.87
   2 !   13.2   0.0   1.8e-05     0.012     167     196 ..     223     252 ..     211     263 .. 0.88

  Alignments for each domain:
  == domain 1    score: -3.2 bits;  conditional E-value: 1.8
   TIGR02253   3 kavfFDlddTL 13 
                 +++ FD d+TL
  MMETSP1137-20121227|9188_1 133 RGLVFDKDNTL 143
                 7889******9 PP

  == domain 2    score: 13.2 bits;  conditional E-value: 1.8e-05
   TIGR02253 167 peeavmvGDrlekDikGaknlglktvwinr 196
                 p   vm+GDrl +D+  +++ g+ tv+ ++
  MMETSP1137-20121227|9188_1 223 PATLVMIGDRLLTDVVFGNAHGMLTVYCKK 252
                 5667**********************9887 PP

>> TIGR01459  HAD-SF-IIA-hyp4: HAD hydrolase, TIGR01459 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   0.0   1.4e-05    0.0092     169     239 ..     178     249 ..     168     251 .. 0.84

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 1.4e-05
   TIGR01459 169 agrtrygaGelaelfee.lGGkviyvGkPypaifdkalkeleerekrrvllvGDslvtDiaganavgidtal 239
                 ag++    G  a+ +e+ l  +v +     p  f+ + ++    +   ++++GD l tD++ +na g+ t++
  MMETSP1137-20121227|9188_1 178 AGTPDDHGGVEADAIEQaLAIRVLRRQHKKPRGFESIEHQFPSCPPATLVMIGDRLLTDVVFGNAHGMLTVY 249
                 55555566778888876467789999999999*********************************9998865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (387 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        76  (0.0185275); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.32u 0.15s 00:00:00.47 Elapsed: 00:00:00.50
# Mc/sec: 1021.60
//
Query:       MMETSP1137-20121227|9190_1  [L=340]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (340 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       259  (0.0631399); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.15s 00:00:00.43 Elapsed: 00:00:00.86
# Mc/sec: 521.82
//
Query:       MMETSP1137-20121227|9191_1  [L=308]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (308 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       105  (0.0255973); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.16s 00:00:00.41 Elapsed: 00:00:00.36
# Mc/sec: 1129.24
//
Query:       MMETSP1137-20121227|9192_1  [L=410]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (410 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       154  (0.0375427); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.17s 00:00:00.46 Elapsed: 00:00:00.54
# Mc/sec: 1002.14
//
Query:       MMETSP1137-20121227|9193_1  [L=286]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (286 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        86  (0.0209654); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.18s 00:00:00.42 Elapsed: 00:00:00.32
# Mc/sec: 1179.65
//
Query:       MMETSP1137-20121227|9194_1  [L=145]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00049   18.3   0.0     0.0031   15.7   0.0    2.1  1  TIGR03636 L23_arch: archaeal ribosomal protein L23


Domain annotation for each model (and alignments):
>> TIGR03636  L23_arch: archaeal ribosomal protein L23
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   7.6e-07    0.0031      19      64 ..      31      90 ..      28      94 .. 0.73

  Alignments for each domain:
  == domain 1    score: 15.7 bits;  conditional E-value: 7.6e-07
   TIGR03636 19 fiVdrkatKkdikeaveklfdvkVekvntl.......itpkge.......KkAyvkLkee 64
                f V+ k tK +ike + +l+++ V kv+t+       +tp+g+       K+Ayv L++e
  MMETSP1137-20121227|9194_1 31 FHVSPKMTKFEIKEYLIQLYGMPVSKVHTVnfdgrfyMTPEGQrrkhpsyKRAYVYLEDE 90
                88999**********************996333333367777544344446677776666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (145 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        89  (0.0216967); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.17u 0.15s 00:00:00.32 Elapsed: 00:00:00.31
# Mc/sec: 617.37
//
Query:       MMETSP1137-20121227|9195_1  [L=298]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (298 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        90  (0.0219405); expected 82.0 (0.02)
Passed bias filter:                       37  (0.00901999); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.13s 00:00:00.35 Elapsed: 00:00:00.36
# Mc/sec: 1092.58
//
Query:       MMETSP1137-20121227|9196_1  [L=89]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (89 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        64  (0.0156021); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.36
# Mc/sec: 326.31
//
Query:       MMETSP1137-20121227|9197_1  [L=391]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (391 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        50  (0.0121892); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.15s 00:00:00.42 Elapsed: 00:00:00.37
# Mc/sec: 1394.80
//
Query:       MMETSP1137-20121227|9198_1  [L=260]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (260 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       170  (0.0414432); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.15s 00:00:00.38 Elapsed: 00:00:00.75
# Mc/sec: 457.56
//
Query:       MMETSP1137-20121227|9199_1  [L=355]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   3.4e-136  451.8   4.0    3.6e-95  316.8   0.0    2.0  2  TIGR01520 FruBisAldo_II_A: fructose-bisphosphate aldolase, class II
    9.5e-82  272.4   0.0    8.3e-81  269.3   0.0    1.9  1  TIGR00167 cbbA: ketose-bisphosphate aldolases
    7.7e-37  125.4   0.0    6.9e-36  122.2   0.0    1.9  1  TIGR01859 fruc_bis_ald_: fructose-1,6-bisphosphate aldolase, class II
    3.4e-16   57.0   0.4    5.9e-15   52.9   0.3    3.0  1  TIGR01858 tag_bisphos_ald: class II aldolase, tagatose bisphosphate family
    4.5e-12   43.5   2.2      5e-08   30.2   0.3    4.2  4  TIGR01521 FruBisAldo_II_B: fructose-bisphosphate aldolase, class II, Calvin cycle subtype
     0.0092   14.0   0.2      0.027   12.5   0.0    1.8  2  TIGR03455 HisG_C-term: ATP phosphoribosyltransferase, C-terminal domain


Domain annotation for each model (and alignments):
>> TIGR01520  FruBisAldo_II_A: fructose-bisphosphate aldolase, class II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  136.0   1.0   4.8e-43   3.3e-40       5     113 ..      30     137 ..      27     145 .. 0.97
   2 !  316.8   0.0   5.3e-98   3.6e-95     147     354 ..     144     349 ..     137     352 .. 0.98

  Alignments for each domain:
  == domain 1    score: 136.0 bits;  conditional E-value: 4.8e-43
   TIGR01520   5 lktgvilgedvaklfevakeekfaiPainvvssetvnaaleaardakspiilqfsnggaafiaGkGvkdeaekaasiaGaiaaaeyvrsiaekygvpvvlhtdhCakkl 113
                 +k+gv++g+d+  lf+ ake++faiPa+n v+s++vna+le+a++++ p+i+q+s+g+ af++GkG+kd+  ka +iaG+ia+a++vr +a+ y vpvv+h+dhCak+ 
  MMETSP1137-20121227|9199_1  30 VKSGVVVGDDLLALFKWAKEQSFAIPAVNYVASSSVNAVLESAAKSENPVIVQVSQGCGAFYCGKGIKDDGYKA-TIAGSIALAKHVRAVAPMYDVPVVIHSDHCAKNW 137
                 6899*********************************************************************9.9*******************************85 PP

  == domain 2    score: 316.8 bits;  conditional E-value: 5.3e-98
   TIGR01520 147 pieenieiakkylkrmakiklileieiGitGGeedGvdneeadkeelytkPedvekvyeelskispkfsiaaafGnvhGvykpGnvklrPdiladgqeyvaeklglkeakplsfvfhGGsGstkeeikealsyGvvkvnvdtdtqyaalegildyvlknedylqsqvGnpkgeekpnkkvydPrvwlreaeksmkarvekaleelnai 354
                   eenie +kk+l +mak+k++le+eiGitGG edGvdn+ ++k +l t+ e+v+ vye+l +i p+fsiaaafGnvhGvykpGnvklrP++l ++qey+a k g +  kpl +vfhGGsGst+++ik+a+s+Gvvk+n+dtdtq+a++eg+l++++++e ylq+q+Gnp+ge+kpnk +ydPr wlre e+sm++rve a++el a 
  MMETSP1137-20121227|9199_1 144 VDEENIEACKKHLTKMAKMKIWLEMEIGITGGVEDGVDNSGVAKVKLCTSAEQVYFVYEALAPIAPYFSIAAAFGNVHGVYKPGNVKLRPELLGQHQEYAATKSGSP--KPLYLVFHGGSGSTADDIKTAVSNGVVKMNIDTDTQWAYWEGLLKFYKSKEGYLQGQIGNPEGEDKPNKSFYDPRKWLRECEASMTKRVELAFQELGAF 349
                 579*******************************************************************************************************9..**********************************************************************************************99775 PP

>> TIGR00167  cbbA: ketose-bisphosphate aldolases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  269.3   0.0   1.2e-83   8.3e-81       2     287 ..      36     349 ..      35     352 .. 0.96

  Alignments for each domain:
  == domain 1    score: 269.3 bits;  conditional E-value: 1.2e-83
   TIGR00167   2 alvdvkellekakeegyaipaiNvvnlesikavleaaeeaksPviiqasegaakyiaG............leaiaalvkalveaekytvPvvlHlDHgaseesiaeavkagfsSvMiDaSeepfeeNieltkkvvelahkvgvsvEaElGilggeedgvdnskadesalytdpe....eakelvkksqvdalAaaiGnvHGvYkkepkkLkferleeiqklvs........lplVlHGgsgipeeeikkaiklGvvKvNidTdlqlAfaeavreylkenkde..................ydprkylkeaekamkevvkekikelgsa 287
                 +++d+  l++ ake+ +aipa+N v ++s++avle a++++ Pvi+q+s+g  +++ G             + ia + ++++ a  y vPvv+H+DH+a+      ++ a     M+D      eeNie +kk +  ++k+ +++E+E+Gi+gg edgvdns +++ +l t  e    ++++l+++ + +++Aaa+GnvHGvYk++++kL++e l ++q++          l lV+HGgsg+++++ik+a+++GvvK+NidTd+q+A++e++++++k+++ +                  ydprk+l+e e +m+++v+ +++elg+ 
  MMETSP1137-20121227|9199_1  36 VGDDLLALFKWAKEQSFAIPAVNYVASSSVNAVLESAAKSENPVIVQVSQGCGAFYCGkgikddgykatiAGSIALAKHVRAVAPMYDVPVVIHSDHCAK------NWYAC--TSMVD------EENIEACKKHLTKMAKMKIWLEMEIGITGGVEDGVDNSGVAKVKLCTSAEqvyfVYEALAPIAPYFSIAAAFGNVHGVYKPGNVKLRPELLGQHQEYAAtksgspkpLYLVFHGGSGSTADDIKTAVSNGVVKMNIDTDTQWAYWEGLLKFYKSKEGYlqgqignpegedkpnksfYDPRKWLRECEASMTKRVELAFQELGAF 349
                 56778899*************************************************************999**************************43......33332..34887......8*************************************************99999******************************************9999***************************************************************************************************9976 PP

>> TIGR01859  fruc_bis_ald_: fructose-1,6-bisphosphate aldolase, class II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  122.2   0.0     1e-38   6.9e-36       7     278 ..      43     348 ..      37     351 .. 0.79

  Alignments for each domain:
  == domain 1    score: 122.2 bits;  conditional E-value: 1e-38
   TIGR01859   7 llekakkekYavgafninnlellqaileaaeeeksPvivqvsegavk.Ylg.............gikvvvalvkalieklsivPvalhLDhGssyescikaikaGfssvmiDashlpleenlketkkvveiahakgvsveaelGklgGieddvvek...eaeladideakklvketgvD.....aLaiaiGtshGkykge.pkldferlkeikkl......lnlP..lvlhGasGipeeqlkkaiklgiakvnidtdlrlaftaairkvle..................ekkdeydpRkilaparealkevvkekikvlgs 278
                 l++ ak++ +a++a+n      ++a+le+a +++ Pvivqvs+g    Y g             g  ++++ v+a++    +vPv++h Dh    ++  ++        m+D      een++  kk ++   ++ +  e+e+G  gG+ed+v++    +++l +  e   +v e+        ++a+a G++hG yk    kl+ e l + +++       + P  lv hG+sG + +++k a++ g+ k+nidtd++ a+ + + k+ +                   +k+ ydpRk+l +++  + + v+  +++lg+
  MMETSP1137-20121227|9199_1  43 LFKWAKEQSFAIPAVNYVASSSVNAVLESAAKSENPVIVQVSQGCGAfYCGkgikddgykatiaGSIALAKHVRAVAPM-YDVPVVIHSDHC--AKNWYACT------SMVD------EENIEACKKHLTKMAKMKIWLEMEIGITGGVEDGVDNSgvaKVKLCTSAEQVYFVYEALAPiapyfSIAAAFGNVHGVYKPGnVKLRPELLGQHQEYaatksgSPKPlyLVFHGGSGSTADDIKTAVSNGVVKMNIDTDTQWAYWEGLLKFYKskegylqgqignpegedkPNKSFYDPRKWLRECEASMTKRVELAFQELGA 348
                 7889****************************************87626669999995555443333344445554444.44*********9..44444442......3777......9********9999999*******************986222456777777777888754331122269*********99865455555555443333111111345533799***************************************999**************98877889****************99998888885 PP

>> TIGR01858  tag_bisphos_ald: class II aldolase, tagatose bisphosphate family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.9   0.3   8.6e-18   5.9e-15       7     247 ..      43     299 ..      39     350 .. 0.76

  Alignments for each domain:
  == domain 1    score: 52.9 bits;  conditional E-value: 8.6e-18
   TIGR01858   7 llkeaqkgGyavpafnihnletlqvvvetaaelkspvilaGtpgtfkyagteelvalvsaaakkyelplalhldhheslddikqkvaaGvksv.midashlsfeenvklvkevvdfchrfdasveaelGrlgGveddlsvd..eedalytdpdeakefv.ea....tGvdslavaiGtahGlykea.....pkl..dfdrlakirekvd..vplvlhGasdvpdelvrrtielGiskvnvatelkiafsdalkayfie 247
                 l+k a+++ +a+pa n     ++++v+e aa+ + pvi+  + g   + + + +     +a+   ++ la h+     + d+   +++   +     ++ +  een++  k+ +    ++   +e e+G  gGved +     ++  l t  ++   fv ea    +   s+a a G  hG+yk       p+l  + +  a  +      + lv+hG+s+ + ++++ ++  G+ k+n+ t+ + a+ + l +++  
  MMETSP1137-20121227|9199_1  43 LFKWAKEQSFAIPAVNYVASSSVNAVLESAAKSENPVIVQVSQGCGAFYCGKGIKDDGYKATIAGSIALAKHVRAVAPMYDVPVVIHSDHCAKnWYACTSMVDEENIEACKKHLTKMAKMKIWLEMEIGITGGVEDGVDNSgvAKVKLCTSAEQVY-FVyEAlapiAPYFSIAAAFGNVHGVYKPGnvklrPELlgQHQEYAATKSGSPkpLYLVFHGGSGSTADDIKTAVSNGVVKMNIDTDTQWAYWEGLLKFYKS 299
                 56779999********************************9999999999999999999999999999999999999999999999886544303444556679********************************88654214555666666654.44143211134569************954211224442222333333333332255899*******************************98887666543 PP

>> TIGR01521  FruBisAldo_II_B: fructose-bisphosphate aldolase, class II, Calvin cycle subtype
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.2   0.3   7.3e-11     5e-08       7      91 ..      43     142 ..      39     152 .. 0.76
   2 ?    0.5   0.0     0.082        56     151     200 ..     173     225 ..     163     236 .. 0.71
   3 !    6.7   0.0     0.001       0.7     255     283 ..     262     290 ..     254     305 .. 0.83
   4 ?    0.5   0.0     0.077        53     293     323 ..     318     348 ..     312     354 .. 0.77

  Alignments for each domain:
  == domain 1    score: 30.2 bits;  conditional E-value: 7.3e-11
   TIGR01521   7 lldhaaergygvpafnvnnleqilaimeaadktdspvilqasrgarsy...............agevllrklvlaaveeypdipvvlhqdhgn.spatcls 91 
                 l+  a e+++ +pa n      + a++e+a k++ pvi+q+s+g   +               ag   l+k v a+  +y d+pvv+h dh + +  +c s
  MMETSP1137-20121227|9199_1  43 LFKWAKEQSFAIPAVNYVASSSVNAVLESAAKSENPVIVQVSQGCGAFycgkgikddgykatiAGSIALAKHVRAVAPMY-DVPVVIHSDHCAkNWYACTS 142
                 678899************************************99754222222222222333367778999999999888.8*********8614456665 PP

  == domain 2    score: 0.5 bits;  conditional E-value: 0.082
   TIGR01521 151 kgeaedghgfegaldrsqlltdpeeaaefvkktkvd.....alavaigtshgayk 200
                 +g+ edg+   g+  + +l t   e + fv ++        ++a a g  hg yk
  MMETSP1137-20121227|9199_1 173 TGGVEDGVDNSGVA-KVKLCTSA-EQVYFVYEALAPiapyfSIAAAFGNVHGVYK 225
                 46788998888864.56777765.56788887654311222689999******99 PP

  == domain 3    score: 6.7 bits;  conditional E-value: 0.001
   TIGR01521 255 gvpveeivkgikfgvrkvnidtdlrlaat 283
                 g   ++i+  +  gv k+nidtd + a  
  MMETSP1137-20121227|9199_1 262 GSTADDIKTAVSNGVVKMNIDTDTQWAYW 290
                 56678999***************998865 PP

  == domain 4    score: 0.5 bits;  conditional E-value: 0.077
   TIGR01521 293 dpsefdprkflkkaveamkdvckaryeafgt 323
                 ++s +dprk+l+++   m +     ++++g+
  MMETSP1137-20121227|9199_1 318 NKSFYDPRKWLRECEASMTKRVELAFQELGA 348
                 67789*******9999998877777776665 PP

>> TIGR03455  HisG_C-term: ATP phosphoribosyltransferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0       2.9     2e+03      37      59 ..      61      83 ..      55      86 .. 0.62
   2 !   12.5   0.0   3.9e-05     0.027      43      86 ..     114     159 ..     109     170 .. 0.90

  Alignments for each domain:
  == domain 1    score: -3.1 bits;  conditional E-value: 2.9
   TIGR03455 37 pkdsLdeilavlPglegPTvskl 59
                  +s++++l+  +  e+P + ++
  MMETSP1137-20121227|9199_1 61 ASSSVNAVLESAAKSENPVIVQV 83
                45566666666666666666655 PP

  == domain 2    score: 12.5 bits;  conditional E-value: 3.9e-05
   TIGR03455  43 eilavlPglegPTvskla..dedwvaVeavvdekevneliekLkev 86 
                  ++av P  + P v + +   ++w+a +++vde+++    ++L+++
  MMETSP1137-20121227|9199_1 114 HVRAVAPMYDVPVVIHSDhcAKNWYACTSMVDEENIEACKKHLTKM 159
                 68899999999*9999999999*********************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (355 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       121  (0.0294978); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.39u 0.12s 00:00:00.51 Elapsed: 00:00:00.54
# Mc/sec: 867.71
//
Query:       MMETSP1137-20121227|9200_1  [L=162]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (162 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        81  (0.0197465); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.12s 00:00:00.30 Elapsed: 00:00:00.28
# Mc/sec: 737.32
//
Query:       MMETSP1137-20121227|9201_1  [L=289]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (289 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        43  (0.0104827); expected 82.0 (0.02)
Passed bias filter:                       40  (0.00975134); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.14s 00:00:00.35 Elapsed: 00:00:00.71
# Mc/sec: 537.25
//
Query:       MMETSP1137-20121227|9202_1  [L=796]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.7e-06   22.6   0.0      0.001   15.5   0.0    2.1  2  TIGR01530 nadN: NAD nucleotidase


Domain annotation for each model (and alignments):
>> TIGR01530  nadN: NAD nucleotidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   2.5e-07     0.001      41     104 ..     165     228 ..     147     241 .. 0.84
   2 !    4.7   0.0   0.00048         2     354     442 ..     464     551 ..     461     558 .. 0.74

  Alignments for each domain:
  == domain 1    score: 15.5 bits;  conditional E-value: 2.5e-07
   TIGR01530  41 lqklrkksknalvlhagdaligtlystlfrgradavlmnaanfdyftlgnhefdagneglkkll 104
                 +++ +    n +v   gd l  +l s+l +g a   l+n  + dy  +gnhe d   e l + +
  MMETSP1137-20121227|9202_1 165 IRQEKSLRTNVIVTMGGDFLAPSLLSSLDNGAAMVRLFNLMGVDYVCFGNHEADIPYEALTQRI 228
                 444455567999******************************************9999998755 PP

  == domain 2    score: 4.7 bits;  conditional E-value: 0.00048
   TIGR01530 354 mrggsv.nrvpdkagsnpegsvatrfvaetmlselksfgagkvdlviqnaggvradil....pgevtyndaytllpfsntlvlvdvegaelkqv 442
                 m+ gsv    p+ +gs       t ++a  m ++         ++++ n+g vr +i      g +ty +  +  pf   +++v++ g+ l + 
  MMETSP1137-20121227|9202_1 464 MPDGSVvCGFPKSKGSRLGPCTLTMYLATIMKQQTG------AEVALVNSGAVRGEIDygdhQGRLTYAQLMSECPFPSEFIVVEMLGSVLAEA 551
                 555554145677777777777777777777765443......567788*********722224579**********************998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (796 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        83  (0.020234); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.19s 00:00:00.68 Elapsed: 00:00:00.64
# Mc/sec: 1641.61
//
Query:       MMETSP1137-20121227|9203_1  [L=136]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (136 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        41  (0.00999512); expected 82.0 (0.02)
Passed bias filter:                       38  (0.00926377); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.15s 00:00:00.31 Elapsed: 00:00:00.25
# Mc/sec: 718.02
//
Query:       MMETSP1137-20121227|9204_1  [L=544]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-12   45.1   8.3    1.4e-12   45.1   5.7    1.8  2  TIGR00890 2A0111: oxalate/formate antiporter
  ------ inclusion threshold ------
        5.1    3.2  10.9          7    2.7   7.6    1.1  1  TIGR02442 Cob-chelat-sub: cobaltochelatase subunit


Domain annotation for each model (and alignments):
>> TIGR00890  2A0111: oxalate/formate antiporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.1   5.7   6.8e-16   1.4e-12      44     166 ..      42     172 ..       4     199 .. 0.76
   2 ?   -4.4   0.3      0.76   1.6e+03     278     305 ..     359     385 ..     351     395 .. 0.49

  Alignments for each domain:
  == domain 1    score: 45.1 bits;  conditional E-value: 6.8e-16
   TIGR00890  44 ftlllivlalsqvvgGkladkfGpravallggi.llgiGfifaal.....adslallyltyg.lasvgegivYgialstavkWfpdkrGLasgiiiggyGlGslilsplitsvie.legveaafivmgiva 166
                  +l ++  a++    G+l  ++G+ +  +++g  + ++G ++aa+     ++s a+l+l++g  +++g+g +Y ++++t+  Wfpd++GL++g+   g GlG+++ +    s+   +eg +   ++ gi+ 
  MMETSP1137-20121227|9204_1  42 AGLRSVTFAVTNLFFGQLMLRRGSPTQWVASGCfVAALGLVVAAMnvaspQPSDAVLLLSWGvGTGLGSGLLYMSVFQTTLAWFPDRKGLVAGLLGFGQGLGAMTWNAASLSIAAvMEGSTMLLLYGGIII 172
                 567788889999999****9***888888877615679*987776444447899********5569**************************************998877777652355566666666665 PP

  == domain 2    score: -4.4 bits;  conditional E-value: 0.76
   TIGR00890 278 sisavlllslllikkisdvlflAlvalv 305
                 ++sa++  +ll   +++d +    +al+
  MMETSP1137-20121227|9204_1 359 GLSAAVFGLLLQSSAVQD-AMTSFIALM 385
                 444444444444444444.233333333 PP

>> TIGR02442  Cob-chelat-sub: cobaltochelatase subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   7.6    0.0034         7     314     415 ..     417     513 ..     398     535 .. 0.41

  Alignments for each domain:
  == domain 1    score: 2.7 bits;  conditional E-value: 0.0034
   TIGR02442 314 pfeeeqekeekkleekkeeakpdeekedeseekekeeskkqe.....eeepgkddekeedekeeaeeeaesaeevalepagkifrvkllavskar.argasGrrsktr 415
                 ++e+      +++++++++++ +++ e+e+ ++e++e+ +q+     +++p++d e+++++ ++ e+    a++ +++p+   +++   + ++++ ++   G rs+++
  MMETSP1137-20121227|9204_1 417 SSEA------DHKHTRDRHQSGQQDLEQEA-QQEAQEDLQQDrqqdlQQDPQQDVEQDPHHCAKLES----ASTAKAKPQRVLINTSCSRKPSSSgRTYTVGTRSDSA 513
                 2222......11222222222222222221.122222222221001222333333333333333222....2334455555555555555554444455555555443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (544 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       216  (0.0526572); expected 82.0 (0.02)
Passed bias filter:                      105  (0.0255973); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.16s 00:00:00.57 Elapsed: 00:00:00.44
# Mc/sec: 1631.87
//
Query:       MMETSP1137-20121227|9205_1  [L=598]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (598 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       293  (0.0714286); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.14s 00:00:00.53 Elapsed: 00:00:00.55
# Mc/sec: 1435.08
//
Query:       MMETSP1137-20121227|9206_1  [L=237]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (237 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       114  (0.0277913); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.16s 00:00:00.40 Elapsed: 00:00:00.35
# Mc/sec: 893.75
//
Query:       MMETSP1137-20121227|9207_1  [L=250]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (250 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       237  (0.0577767); expected 82.0 (0.02)
Passed bias filter:                      133  (0.0324232); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.15s 00:00:00.40 Elapsed: 00:00:00.43
# Mc/sec: 767.38
//
Query:       MMETSP1137-20121227|9208_1  [L=62]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (62 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        37  (0.00901999); expected 82.0 (0.02)
Passed bias filter:                       33  (0.00804486); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.12s 00:00:00.23 Elapsed: 00:00:00.24
# Mc/sec: 340.97
//
Query:       MMETSP1137-20121227|9209_1  [L=243]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (243 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       872  (0.212579); expected 82.0 (0.02)
Passed bias filter:                      138  (0.0336421); expected 82.0 (0.02)
Passed Vit filter:                        92  (0.0224281); expected 4.1 (0.001)
Passed Fwd filter:                        46  (0.011214); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 1.66u 0.19s 00:00:01.85 Elapsed: 00:00:01.87
# Mc/sec: 171.52
//
Query:       MMETSP1137-20121227|9210_1  [L=391]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (391 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       141  (0.0343735); expected 82.0 (0.02)
Passed bias filter:                      105  (0.0255973); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.16s 00:00:00.47 Elapsed: 00:00:00.55
# Mc/sec: 938.32
//
Query:       MMETSP1137-20121227|9211_1  [L=367]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (367 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       165  (0.0402243); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.16s 00:00:00.44 Elapsed: 00:00:00.62
# Mc/sec: 781.29
//
Query:       MMETSP1137-20121227|9212_1  [L=306]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (306 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       197  (0.0480254); expected 82.0 (0.02)
Passed bias filter:                      134  (0.032667); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.16s 00:00:00.42 Elapsed: 00:00:01.31
# Mc/sec: 308.31
//
Query:       MMETSP1137-20121227|9213_1  [L=792]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     4e-190  631.4   2.0     5e-190  631.1   1.4    1.0  1  TIGR00958 3a01208: antigen peptide transporter 2
   3.9e-163  542.0  11.6   5.5e-163  541.5   8.0    1.1  1  TIGR02204 MsbA_rel: ABC transporter, permease/ATP-binding protein
   3.1e-143  476.1   5.1   3.9e-143  475.8   3.5    1.1  1  TIGR02203 MsbA_lipidA: lipid A export permease/ATP-binding protein MsbA
   3.1e-113  377.2   7.2   4.1e-113  376.8   5.0    1.1  1  TIGR01846 type_I_sec_HlyB: type I secretion system ATPase
    3.6e-90  301.2  10.7    5.4e-90  300.6   7.4    1.2  1  TIGR03797 NHLM_micro_ABC2: NHLM bacteriocin system ABC transporter, ATP-binding protein
    1.3e-89  299.1   2.7    1.9e-89  298.5   1.9    1.2  1  TIGR03796 NHLM_micro_ABC1: NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein
    1.2e-87  292.6   3.3    1.7e-87  292.1   2.3    1.1  1  TIGR03375 type_I_sec_LssB: type I secretion system ATPase
      2e-78  262.4   0.0    2.7e-78  262.0   0.0    1.1  1  TIGR01193 bacteriocin_ABC: ABC-type bacteriocin transporter
    1.6e-76  256.2   9.7    1.6e-76  256.2   6.7    1.9  2  TIGR02857 CydD: thiol reductant ABC exporter, CydD subunit
    5.9e-75  250.8   5.1    8.3e-75  250.3   3.5    1.1  1  TIGR01192 chvA: glucan exporter ATP-binding protein
    5.2e-65  217.9  10.1    5.2e-65  217.9   7.0    1.8  2  TIGR02868 CydC: thiol reductant ABC exporter, CydC subunit
    1.4e-63  213.1   4.3    2.1e-63  212.5   3.0    1.1  1  TIGR01842 type_I_sec_PrtD: type I secretion system ATPase
    1.1e-40  136.8   4.2    2.4e-40  135.8   2.9    1.4  1  TIGR00957 MRP_assoc_pro: multi drug resistance-associated protein (MRP)
    2.7e-40  136.1   0.0    4.6e-40  135.3   0.0    1.3  1  TIGR00972 3a0107s01c2: phosphate ABC transporter, ATP-binding protein
    5.2e-35  118.9   0.0    8.7e-35  118.2   0.0    1.3  1  TIGR00968 3a0106s01: sulfate ABC transporter, ATP-binding protein
    3.5e-34  116.2   0.2      6e-34  115.5   0.1    1.3  1  TIGR03258 PhnT: 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT
    4.5e-33  112.5   0.0    7.5e-33  111.7   0.0    1.3  1  TIGR03864 PQQ_ABC_ATP: ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system
    1.8e-31  107.4   0.2    7.6e-31  105.4   0.0    1.9  2  TIGR02769 nickel_nikE: nickel import ATP-binding protein NikE
    3.3e-31  106.5   0.0      5e-31  105.9   0.0    1.2  1  TIGR01186 proV: glycine betaine/L-proline transport ATP binding subunit
    5.4e-31  105.4   0.0    1.2e-30  104.3   0.0    1.5  1  TIGR01166 cbiO: cobalt ABC transporter, ATP-binding protein
    6.7e-31  105.6   0.0    1.1e-30  104.9   0.0    1.2  1  TIGR03265 PhnT2: putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein
      7e-31  105.3   0.0    1.1e-30  104.7   0.0    1.2  1  TIGR01187 potA: polyamine ABC transporter, ATP-binding protein
      1e-30  104.8   0.0    1.5e-30  104.2   0.0    1.2  1  TIGR02982 heterocyst_DevA: ABC exporter ATP-binding subunit, DevA family
    1.3e-30  104.6   0.0    2.4e-30  103.8   0.0    1.3  1  TIGR02142 modC_ABC: molybdate ABC transporter, ATP-binding protein
      4e-30  102.9   0.0    7.1e-30  102.1   0.0    1.4  1  TIGR02673 FtsE: cell division ATP-binding protein FtsE
    1.6e-29  101.1   0.0    2.7e-29  100.3   0.0    1.4  1  TIGR00960 3a0501s02: type II secretory pathway family protein
    2.3e-29  100.3   0.0    4.2e-29   99.5   0.0    1.4  1  TIGR02315 ABC_phnC: phosphonate ABC transporter, ATP-binding protein
    3.4e-29   99.6   0.1    1.8e-28   97.2   0.1    2.0  1  TIGR03005 ectoine_ehuA: ectoine/hydroxyectoine ABC transporter, ATP-binding protein EhuA
    1.3e-28   97.7   0.9    2.7e-28   96.8   0.6    1.4  1  TIGR03873 F420-0_ABC_ATP: proposed F420-0 ABC transporter, ATP-binding protein
    1.7e-28   97.5   0.0    3.4e-28   96.5   0.0    1.4  1  TIGR01277 thiQ: thiamine ABC transporter, ATP-binding protein
    1.8e-28   97.4   0.0    2.7e-28   96.8   0.0    1.2  1  TIGR03410 urea_trans_UrtE: urea ABC transporter, ATP-binding protein UrtE
    3.5e-27   93.0   0.0    5.4e-27   92.4   0.0    1.2  1  TIGR03608 L_ocin_972_ABC: putative bacteriocin export ABC transporter, lactococcin 972 group
    4.4e-26   89.5   0.0    7.8e-26   88.7   0.0    1.3  1  TIGR02314 ABC_MetN: D-methionine ABC transporter, ATP-binding protein
    2.6e-25   87.1   0.1    7.8e-25   85.6   0.0    1.6  1  TIGR01188 drrA: daunorubicin resistance ABC transporter, ATP-binding protein
    1.5e-24   84.5   0.0    4.3e-24   83.0   0.0    1.7  1  TIGR02770 nickel_nikD: nickel import ATP-binding protein NikD
    1.8e-24   84.3   0.0      3e-24   83.6   0.0    1.4  1  TIGR02211 LolD_lipo_ex: lipoprotein releasing system, ATP-binding protein
    7.4e-23   77.8   0.9    5.7e-20   68.3   0.0    2.2  2  TIGR01271 CFTR_protein: cystic fibrosis transmembrane conductor regulator (CFTR)
    1.8e-22   77.9   0.0      3e-22   77.2   0.0    1.3  1  TIGR01184 ntrCD: nitrate ABC transporter, ATP-binding proteins C and D
    2.6e-21   73.7   0.0    2.6e-21   73.7   0.0    2.5  2  TIGR00955 3a01204: pigment precursor permease
    3.2e-21   73.7   0.0    1.1e-20   71.9   0.0    1.8  1  TIGR01978 sufC: FeS assembly ATPase SufC
    4.6e-21   72.9   0.2    1.1e-20   71.7   0.1    1.5  1  TIGR01288 nodI: nodulation ABC transporter NodI
    6.5e-21   72.3   4.5    2.2e-20   70.6   3.1    1.8  1  TIGR01194 cyc_pep_trnsptr: cyclic peptide transporter
    8.9e-21   72.2   0.1    5.1e-20   69.7   0.1    2.0  1  TIGR02324 CP_lyasePhnL: phosphonate C-P lyase system protein PhnL
    7.7e-20   69.4   0.0    2.3e-19   67.9   0.0    1.7  1  TIGR03411 urea_trans_UrtD: urea ABC transporter, ATP-binding protein UrtD
    7.9e-20   68.6   0.0    1.2e-19   68.0   0.0    1.1  1  TIGR02633 xylG: D-xylose ABC transporter, ATP-binding protein
    1.5e-19   68.4   0.0    8.6e-19   65.9   0.0    1.9  1  TIGR03740 galliderm_ABC: lantibiotic protection ABC transporter, ATP-binding subunit
    3.7e-19   67.0   0.0    7.2e-19   66.1   0.0    1.4  1  TIGR01189 ccmA: heme ABC exporter, ATP-binding protein CcmA
    5.3e-19   66.6   0.0    2.8e-18   64.3   0.0    1.9  1  TIGR03522 GldA_ABC_ATP: gliding motility-associated ABC transporter ATP-binding subunit GldA
      1e-17   62.4   0.8    8.6e-17   59.4   0.5    2.2  1  TIGR03771 anch_rpt_ABC: anchored repeat-type ABC transporter, ATP-binding subunit
    1.3e-16   58.1   0.0    4.6e-10   36.5   0.0    2.1  2  TIGR03719 ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family
    2.7e-15   54.0   0.0    5.7e-15   53.0   0.0    1.4  1  TIGR03415 ABC_choXWV_ATP: choline ABC transporter, ATP-binding protein
    8.5e-15   52.1   0.0    2.9e-14   50.3   0.0    1.6  1  TIGR03269 met_CoM_red_A2: methyl coenzyme M reductase system, component A2
    7.4e-14   49.6   0.1    2.3e-13   48.0   0.1    1.8  1  TIGR02323 CP_lyasePhnK: phosphonate C-P lyase system protein PhnK
    1.3e-12   43.3   0.0    1.7e-12   42.9   0.0    1.1  1  TIGR01257 rim_protein: rim ABC transporter
    1.9e-11   41.0   0.0    1.5e-07   28.0   0.0    2.3  2  TIGR00954 3a01203: peroxysomal long chain fatty acyl transporter
    2.1e-11   40.0   0.0    3.3e-11   39.4   0.0    1.3  1  TIGR00956 3a01205: pleiotropic drug resistance family protein
    5.3e-08   29.3   0.0    2.6e-05   20.4   0.0    2.1  2  TIGR00630 uvra: excinuclease ABC subunit A
  ------ inclusion threshold ------
      0.027   12.0   0.0      0.073   10.6   0.0    1.7  1  TIGR00455 apsK: adenylylsulfate kinase
      0.033   10.5   0.0       0.05    9.9   0.0    1.1  1  TIGR00602 rad24: checkpoint protein rad24


Domain annotation for each model (and alignments):
>> TIGR00958  3a01208: antigen peptide transporter 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  631.1   1.4  7.2e-192    5e-190      10     711 .]      50     764 ..      40     764 .. 0.88

  Alignments for each domain:
  == domain 1    score: 631.1 bits;  conditional E-value: 7.2e-192
   TIGR00958  10 lslllvdlallt..dlleeifslllpfekellelwlegllrlgvlalaalgvllnkvegllkalkplvaalalv.lpslaslraLvalealksaerlallsws...alvvsylaalleaalwaklss..agasekeaeeeqsetad.lllrLLkllkrdlkllllalvllvlsvlgevliPkytgrvidtllqdks.....vealakaiflltllslaSsllaglrgGsfeyamarinlriredlfksllrQdigFfdenktGeltSRlssDtstvseslslnvnvllrnlvkllgllifmlslSprLtlvtllalPlvllaekvfgkvyqklseevqeavakanqvaeEalsglrTVrSFaaEekEasrfkekleeilqlnkkkalayalylwttellgllilvlvLayGgqlvlegkvssgnLvsFlLYqlqlgeavreLsevysellkavGasekvFeyldRkPqlelsgtlapknleGkveFqdVsFsYPsrpdkpvlkdLtftlepGevvalVGPsGsGKStvaallenlYqPtgGqvllDgkplkeydhkylhrkvalVgqEPvlfsgsvreNiaYGltktedeevtaaakaanahdFiselekgydtevgekGsqlsgGqkqriAiARALvrkPrvLiLDeAtSALDaeveqllqe..sksaksrtvlliahrLstvekadkilvlkkgsvvelGthkqLmekedvykqlv 711
                 + l+l++ a+ +  d+l+++++   p   + +++ + gl  +gvl  ++++ +   v+ ll +   +v +   v +    s  + +a+++ +    + l+s +   a++ + ++   +  l++++     +a+e + +++++++++ ++ rLL+l++++++ l++a v l++s+ + +++P   g+++  +++  +      e l + ++ l+ + ++  ++ ++rg  f+ a +r+ +r+r++lf+ ++ Q+igFfd+ +tGel+ Rl+sDt+++ + ++ nv++ lr   ++l ++++++  S++L+lv l  +P + +++ ++g + +k+s++ q a+a+a+ va+Eals++rTVrSFa E +Ea+r+ + ++e   + ++kalay l+  +   +g++ ++lvL+yGg lv++g+++   L+sFlLY++ ++  +  Ls ++s++++a G+s +vF++ldR+P+l l+g l+ + ++G++eF++VsF+YPsr++  vl    + +epG+vval GPsGsGKStv+ l+e++Y+P++G++llDg pl+ +d  + +r+valV+qEPvlf+ s+ eNi YGl  ++ + v aaa +ana  Fi  +++g+dt vge+G qlsgGqkqriAiARAL+ +P +L+LDeAtSALDae+e+++qe  ++ +++rt +++ahrLstv+ ad i v++kg++ e G+h++L +++++yk+lv
  MMETSP1137-20121227|9213_1  50 TALVLQGYAYHWsaDELQSSLT---PYSFSATTVDASGLAAVGVLLCTVCLCIVPIVGTLLGVCIATVCMAKFVfVLQDRSASHGAAWSVFTTGLAALLGSLActiAFIQKRVSEHKKLNLPSASLNllPPAAEESSKDGEKKKDNvTIGRLLSLAQPEMPTLVVATVALFFSTASTMAMPGLVGELLGGVIGGDGahddrEEGLRRVVLQLSFIFVVGGFFSFVRGYLFTLAGERVVARLRRRLFRHIIVQEIGFFDQSETGELMNRLASDTTVIQSAVTINVSMGLRFGAQALIGMVLIFFESWKLSLVMLAVVPAIAFVAVAYGRFMKKVSKRYQAALAQASSVAQEALSSVRTVRSFAMEVREAKRYVSSVDESYGIGRQKALAYGLFGSIIGTVGQFAIILVLWYGGGLVIRGEMTLAALTSFLLYTIMIAACLGGLSDLFSSMMNALGSSVRVFQLLDRRPRLALTGGLKLDDVRGRIEFRQVSFAYPSRAESAVLDAVDLLIEPGSVVALCGPSGSGKSTVVGLIEKWYEPQQGTILLDGTPLSLVDASWWRRQVALVAQEPVLFACSIAENIGYGLAAVTPDAVEAAADTANAAAFIRAFPNGFDTRVGERGLQLSGGQKQRIAIARALLIDPKMLLLDEATSALDAESEHVVQEaiDRLMAERTTVVVAHRLSTVRGADCICVVSKGKIIERGRHEDLIAQDGLYKKLV 764
                 4555555555541123333333...3334445555566666677777677777777776665554444333333033333344444444444444333333332237777777777777777777666533443333444444444699**************************************987765444233346679**************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************988999***********************************************97 PP

>> TIGR02204  MsbA_rel: ABC transporter, permease/ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  541.5   8.0  7.8e-165  5.5e-163      14     575 ..     203     767 ..     191     768 .. 0.96

  Alignments for each domain:
  == domain 1    score: 541.5 bits;  conditional E-value: 7.8e-165
   TIGR02204  14 kryrarvlaalvaLviaaavtLslplavrkli.....deGfskeesellneafalllvvvlvlalatalrfylvsslGervvadlrkavfahllelspaffdknrsgevlsrltadttllksvvGaslsialrnlllliGalamlvitsvkltslvllavPlvllPillfgrrvrklsresqdrladasayagealeaiktvqayaseeaersrfdaavekayeaarkrikaralliavvivlvfgavvlvlWvGardvlagklsaGeLaqfvlyavlvagslgalsevlgelqraaGaaerliellkaksdikaPaqpkalpakvrgeiefeevkfayParpdqkaldgldltvrpGetvalvGPsGaGkstllelllrfydPqsGailldGvdlreldpeelrerlalvpqdsalfaasvleniryGrpdasdeeveaaakaaeadefisklpeGydtllGergvtLsGGqkqriaiarailkdapiLLLdeatsaLdaeseqlvqqaleelmkgrttlviahrLatvlkadrivvldkGriveqGthaeLiakggLyarlarLq 575
                 ++   ++++a+vaL +++a t+++p  v +l+      +G +++ +e l ++++ l  + +v ++ +++r yl +  Gervva lr+++f h++  + +ffd+ ++ge++ rl++dtt ++s+v   +s+ lr    ++ ++++++  s kl++++l++vP + +  +++gr ++k+s++ q  la+as+ a+eal+ ++tv+++a e +e++r+ ++v+++y ++r++  a  l+ +++ ++   a+ lvlW G+  v+ g+++   L+ f+ly++++a+ lg ls++++ + +a G+  r+++ll+ ++ ++          +vrg+ief +v+fayP+r++  +ld++dl ++pG +val GPsG+Gkst++ l+ ++y+Pq+G+illdG++l  +d +  r+++alv+q+++lfa s+ eni yG    + ++veaaa++a+a+ fi+++p+G+dt +Gerg++LsGGqkqriaiara+l d ++LLLdeatsaLdaese+ vq+a+++lm++rtt+v+ahrL+tv+ ad i v+ kG+i+e+G h++Lia+ gLy++l++ q
  MMETSP1137-20121227|9213_1 203 QPEMPTLVVATVALFFSTASTMAMPGLVGELLggvigGDGAHDDREEGLRRVVLQLSFIFVVGGFFSFVRGYLFTLAGERVVARLRRRLFRHIIVQEIGFFDQSETGELMNRLASDTTVIQSAVTINVSMGLRFGAQALIGMVLIFFESWKLSLVMLAVVPAIAFVAVAYGRFMKKVSKRYQAALAQASSVAQEALSSVRTVRSFAMEVREAKRYVSSVDESYGIGRQKALAYGLFGSIIGTVGQFAIILVLWYGGGLVIRGEMTLAALTSFLLYTIMIAACLGGLSDLFSSMMNALGSSVRVFQLLDRRPRLALTGGL--KLDDVRGRIEFRQVSFAYPSRAESAVLDAVDLLIEPGSVVALCGPSGSGKSTVVGLIEKWYEPQQGTILLDGTPLSLVDASWWRRQVALVAQEPVLFACSIAENIGYGLAAVTPDAVEAAADTANAAAFIRAFPNGFDTRVGERGLQLSGGQKQRIAIARALLIDPKMLLLDEATSALDAESEHVVQEAIDRLMAERTTVVVAHRLSTVRGADCICVVSKGKIIERGRHEDLIAQDGLYKKLVQRQ 767
                 566677899***************99998876222234788999999********************************************************************************************9****************************************************************************************************9**99******************************************************************99875543..4479**********************************************************************************************************************************************************************************************************************************************9987 PP

>> TIGR02203  MsbA_lipidA: lipid A export permease/ATP-binding protein MsbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  475.8   3.5  5.6e-145  3.9e-143       4     569 ..     197     767 ..     194     770 .. 0.97

  Alignments for each domain:
  == domain 1    score: 475.8 bits;  conditional E-value: 5.6e-145
   TIGR02203   4 Rllsyvrpykallvlalvalvlvaatesllaallkplldegfse....lekeevllavPllvvglvvlrGiasfvsdyllakvsnkvvrdlRkklfeklltlpsayfdkessgsllsrltfdseqvvsaatdvlkvlvretltvigllivllylsWqltlivvvllPvlallvrvvskrlrkiskeiqnsigeltkvveealqgyrvvklfggqeaeakRfdavsnrlrrlalkvasasslssplvqliasvalavvllialvqaqagaltvGelvafitamlalikplksLtnvsaklqkglaaaesvfallDsppekd.eGtralervrGkvefrnvtfrypgd.drealdsislkveaGevvalvGrsGsGkstlvnllpRFyepdsGeillDgvdladlkLasLRrqvalvsqdvvLFddtiaenvaYgeleevdeaeveealaaaylkdlvdklpeGldtevGengskLsGGqRqRlaiaRallkdaPiLiLDeatsaLDneseRlvqaaLerlmkgRttlviahRLstiekaDrivvlddGkiverGtheeLlarnGlYasLhkiq 569
                 Rlls ++p++ +lv+a+val+   a+   ++ l+ +ll    ++      +ee l +v l +  ++v+ G  sfv  yl++ + ++vv  lR++lf ++++    +fd++++g+l++rl +d++ + sa+t  + + +r +++ +  ++++++ sW+l+l++++++P +a+++ ++ + ++k+sk  q + +++ +v++eal+  r v++f+ +  eakR+    ++  + + + a a +l  +++  +++ a+ +vl         g++t   l++f+   +++ + l  L+++ +++ + l ++ +vf+llD+ p    +G  +l+ vrG++efr+v+f yp++ + ++ld+++l +e+G vval G+sGsGkst+v l+ ++yep++G illDg++l  +  +  Rrqvalv+q+ vLF  +iaen++Yg    v+ + ve+a+ +a++  ++ + p+G+dt+vGe+g +LsGGq+qR+aiaRall d  +L+LDeatsaLD+ese  vq+a++rlm +Rtt+v+ahRLst++ aD i v+ +Gki+erG he+L+a++GlY +L + q
  MMETSP1137-20121227|9213_1 197 RLLSLAQPEMPTLVVATVALFFSTASTMAMPGLVGELLGGVIGGdgahDDREEGLRRVVLQLSFIFVVGGFFSFVRGYLFTLAGERVVARLRRRLFRHIIVQEIGFFDQSETGELMNRLASDTTVIQSAVTINVSMGLRFGAQALIGMVLIFFESWKLSLVMLAVVPAIAFVAVAYGRFMKKVSKRYQAALAQASSVAQEALSSVRTVRSFAMEVREAKRYVSSVDESYGIGRQKALAYGLFGSIIGTVGQFAIILVLWYGGGLVIRGEMTLAALTSFLLYTIMIAACLGGLSDLFSSMMNALGSSVRVFQLLDRRPRLAlTGGLKLDDVRGRIEFRQVSFAYPSRaESAVLDAVDLLIEPGSVVALCGPSGSGKSTVVGLIEKWYEPQQGTILLDGTPLSLVDASWWRRQVALVAQEPVLFACSIAENIGYGLA-AVTPDAVEAAADTANAAAFIRAFPNGFDTRVGERGLQLSGGQKQRIAIARALLIDPKMLLLDEATSALDAESEHVVQEAIDRLMAERTTVVVAHRLSTVRGADCICVVSKGKIIERGRHEDLIAQDGLYKKLVQRQ 767
                 9*************************************988877666556778899********************************************************************9999999999999********99***********************************************************************************************************************************************************************98875439**********************97367899*********************************************************************************98.889999*****************************************************************************************************************************98766 PP

>> TIGR01846  type_I_sec_HlyB: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  376.8   5.0  5.9e-115  4.1e-113     182     693 ..     255     768 ..     247     769 .. 0.90

  Alignments for each domain:
  == domain 1    score: 376.8 bits;  conditional E-value: 5.9e-115
   TIGR01846 182 alallavavaevalsllrtylfahltsridvelgaklyrhllalPlsyfesrrvGdtvarvreleq.irefltgsaltvvldllf...vvvflavmffyspkltlvvlvslviylllsvivspilrkrvedkfeks.aeaqsflvesvtgietikasavepqfkrrWerqlaayvaas.fkvtklgnlasqaieliqkltaalllwfGaklvlkGelsvGqlvafnmlagrvsqPvlrlaqlWqdfqqvkialerlGdildsPteassagkaalpelkGaiefenirfryke.dspevlsnlsldikaGeviGivGpsGsGkstltkllqrlyvPekGrvlvdgvdlaladPawlrrqvgvvlqenvlfsrsirdnialakPaiseekviaaaklaGahdfiselkqGyetevgekGaalsGGqrqrialaralvanPrilildeatsaldyeseavimrnlreickgrtviiiahrlstvraadrilvlekGkivesGkheellakeglyaklyqqqs 693
                  l l+ + v+  ++s++r ylf+ + +r+ + l  +l+rh++   +++f++  +G+ + r+    + i++ +t   + v + l f   +++ +  +ff s kl lv+l  +++ +++  ++ +++ k+v ++++   a+a+s+  e++++++t+++ a+e +  +r+   + +    + +k+   g + + +i  + + +++l+lw+G  lv+ Ge+++ +l +f +++  +++ +  l+ l+    ++  +  r+ ++ld+      +g + l +++G+ief+++ f y    ++ vl+ + l i++G v+ + GpsGsGkst+  l+ + y P++G +l+dg+ l+l+d +w rrqv++v qe vlf  si++ni  +  a+  + v aaa  a a +fi + ++G++t+vge+G +lsGGq+qria+aral+ +P++l+ldeatsald+ese+v+++ ++++ ++rt +++ahrlstvr ad i v+ kGki+e+G+he+l+a++gly kl q+q 
  MMETSP1137-20121227|9213_1 255 VLQLSFIFVVGGFFSFVRGYLFTLAGERVVARLRRRLFRHIIVQEIGFFDQSETGELMNRLASDTTvIQSAVT---INVSMGLRFgaqALIGMVLIFFESWKLSLVMLAVVPA-IAFVAVAYGRFMKKVSKRYQAAlAQASSVAQEALSSVRTVRSFAMEVREAKRYVSSVDESYGIGrQKALAYGLF-GSIIGTVGQFAIILVLWYGGGLVIRGEMTLAALTSFLLYTIMIAACLGGLSDLFSSMMNALGSSVRVFQLLDRRPRLALTGGLKLDDVRGRIEFRQVSFAYPSrAESAVLDAVDLLIEPGSVVALCGPSGSGKSTVVGLIEKWYEPQQGTILLDGTPLSLVDASWWRRQVALVAQEPVLFACSIAENIGYGLAAVTPDAVEAAADTANAAAFIRAFPNGFDTRVGERGLQLSGGQKQRIAIARALLIDPKMLLLDEATSALDAESEHVVQEAIDRLMAERTTVVVAHRLSTVRGADCICVVSKGKIIERGRHEDLIAQDGLYKKLVQRQM 768
                 5667778888999***********************************************9765551555544...4444455552114555666677788887777666665.55556667788899*****8754999***********************9999888876555550555555555.5699********************************************************************8767777799*******************7515678***************************************************************************************************************************************************************************************************************************995 PP

>> TIGR03797  NHLM_micro_ABC2: NHLM bacteriocin system ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  300.6   7.4   7.7e-92   5.4e-90     138     686 .]     209     768 ..     187     768 .. 0.92

  Alignments for each domain:
  == domain 1    score: 300.6 bits;  conditional E-value: 7.7e-92
   TIGR03797 138 llavllvgllgtllglvvPlatgilldeviP.....daerslllqvalallaaalgallfqlaqslavlRletavdaslqaavwdrLLrlpasfFreysagdLasramg.vsqirrllsgatlkallssifallnlvlllvyslklalvavllalvaiavtlvlgllqvrkerkllelegklsgltvqlingisKlrvagaeerafaawakefseqrklelkaqriedlltvlnavlpvltsavlfalaisllaaaklslgsflafntafgsflkavtslaetlievlavvplyerakPileaepEvdee.kvdpgkLsGaievdrvtFrYekd.gplvLddvslkiepGefvaivGaSGsGKStllrlLLgFekPesGsvlyDGqdlekldvqavRrqlGvVLQngrllsgsileniaggas.ltldeaweaarmagleeDikamPmglhTvisegggtlSGGQrQRlliAralvrkPrillfDEATSALDNrtQaiVsesleklkvtR..iviAHRLSTirnadrilvleeGrvveqGsyeeLlakeGlfaelarRQl 686
                 l++  ++  + t  ++++P + g ll+ vi      d +++ l +v+l l  + ++   f+++++        +v a+l+  ++ +++  +  fF + ++g+L++r  +  + i+ +++  +   l  +  al+ +vl++  s+kl+lv ++++ +++ v ++ g ++ + +++ ++  ++ s+++ + ++++  +r  + e r   ++  +  e+  + ++++ +  l  ++  ++  ++++++ +    l+ + +++l+++ +f     ++ + +  l+  ++++++++    r+  +l+  p  + +   + ++++G+ie ++v+F+Y +   ++vLd v l iepG  va+ G+SGsGKSt++ l+  + +P++G++l DG+ l+ +d +  Rrq+  V Q+  l++ si eni  g   +t+d++ +aa +a  +  i+a P g+ T + e g +lSGGQ+QR+ iAral   P++ll+DEATSALD ++ ++V e++++l + R  +v+AHRLST+r ad i v+++G+++e+G +e+L+a++Gl+++l++RQ+
  MMETSP1137-20121227|9213_1 209 LVVATVALFFSTASTMAMPGLVGELLGGVIGgdgahDDREEGLRRVVLQLSFIFVVGGFFSFVRGYLFTLAGERVVARLRRRLFRHIIVQEIGFFDQSETGELMNRLASdTTVIQSAVTINVSMGLRFGAQALIGMVLIFFESWKLSLVMLAVVPAIAFVAVAYGRFMKKVSKRYQAALAQASSVAQEALSSVRTVRSFAMEVREAKRYVSSVDESYGIGRQKALAYGLFGSIIGTVGQFAIILVLWYGGGLVIRGEMTLAALTSFLLYTIMIAACLGGLSDLFSSMMNALGSSVRVFQLLDRRPRLALTgGLKLDDVRGRIEFRQVSFAYPSRaESAVLDAVDLLIEPGSVVALCGPSGSGKSTVVGLIEKWYEPQQGTILLDGTPLSLVDASWWRRQVALVAQEPVLFACSIAENIGYGLAaVTPDAVEAAADTANAAAFIRAFPNGFDTRVGERGLQLSGGQKQRIAIARALLIDPKMLLLDEATSALDAESEHVVQEAIDRLMAERttVVVAHRLSTVRGADCICVVSKGKIIERGRHEDLIAQDGLYKKLVQRQM 768
                 3444444456788899***********9996332224456789**********************99999999999******************************876256677788888888888888999999****************************************************************************************9999999999999999***********99****************************************************9986527899****************7651578********************************************************************************765554**********************************************************************************8855449**********************************************8 PP

>> TIGR03796  NHLM_micro_ABC1: NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  298.5   1.9   2.8e-91   1.9e-89     139     710 .]     192     765 ..     172     765 .. 0.89

  Alignments for each domain:
  == domain 1    score: 298.5 bits;  conditional E-value: 2.8e-91
   TIGR03796 139 psllrallkrlkgsegallllvlaglllvlpglvvpafskifvDeil.....veeaqewlrplllgllltallqvvltllqlallrrleiklavassarflwhilrlPveffaqRaageiasRvqlndkvaellsgqlattvldlvl.vvfyalvmllydlvlaliaialaainvlalqlvsrkrvdanrrlqqdagklagvaiaglqsietlkAsglesdffsrwaGyqakllnaeqelgvatallsvlpelltsltsalilvvgglrvlegeltiGmlvafqsllasflepveklvglvselqeleadlerldDvlenpvdeeleeeeekaaeseekekLsGkvelrnvtfgy.saleapliedfslslkpGqrvAlvGgsGsGkstiaklvaGlyepwsGeilfDgkpreeiprevlanslalvdqdivlfegtvrdnltlwdetipeedlvrAakDAaihdvilarpggyeaelaegganlsGGqrqRleiARaLvknPsiLilDEatsaLDaetEkaidenlrr..RgctciivaHRLstiRdcdeiivlerGkvverGtHeellakegaYarLir 710
                 + ++  ll+  + +  +l+++ +a ++ + +++++p +    +  ++      ++++e lr ++l+l +  ++ +++++++ +l +    ++  +   r+++hi+   + ff+q  +ge+ +R+ ++  v + +    +++ l + + +++ +++++  ++ l+l+++a+    +++  +  r  ++ ++r q+  +++++va ++l+s+ t++  ++e    +r+     ++    ++  +a  l++ +  ++ +++ +l+l+ gg +v++ge+t+ +l +f   +  + + +  l +l s++ +  +   r+  +l+ +   +l+       +      ++G++e+r+v+f+y s+ e+++++ ++l ++pG+ vAl G+sGsGkst+  l+   yep +G+il+Dg+p++ +  +  +  +alv q+ vlf++++ +n+    ++++ ++++ Aa  A     i a p+g+++++ e g  lsGGq+qR+ iARaL  +P +L+lDEatsaLDae E+ ++e++ r     t+++vaHRLst+R +d i v+ +Gk++erG+He+l+a++g Y++L++
  MMETSP1137-20121227|9213_1 192 NVTIGRLLSLAQPEMPTLVVATVALFFSTASTMAMPGLVGELLGGVIggdgaHDDREEGLRRVVLQLSFIFVVGGFFSFVRGYLFTLAGERVVARLRRRLFRHIIVQEIGFFDQSETGELMNRLASDTTVIQSAVTINVSMGLRFGAqALIGMVLIFFESWKLSLVMLAVVPAIAFVAVAYGRFMKKVSKRYQAALAQASSVAQEALSSVRTVRSFAMEVREAKRYVSSVDESYGIGRQKALAYGLFGSIIGTVGQFAIILVLWYGGGLVIRGEMTLAALTSFLLYTIMIAACLGGLSDLFSSMMNALGSSVRVFQLLDRRPRLALTG----GLKL---DDVRGRIEFRQVSFAYpSRAESAVLDAVDLLIEPGSVVALCGPSGSGKSTVVGLIEKWYEPQQGTILLDGTPLSLVDASWWRRQVALVAQEPVLFACSIAENIGYGLAAVTPDAVEAAADTANAAAFIRAFPNGFDTRVGERGLQLSGGQKQRIAIARALLIDPKMLLLDEATSALDAESEHVVQEAIDRlmAERTTVVVAHRLSTVRGADCICVVSKGKIIERGRHEDLIAQDGLYKKLVQ 765
                 33445555555566666666666666667777777777666666666211114678889999*******************************************************************999988888888888755155666666666889**9999998888888888899999***********************************99999999999888888888899999999999****************************************************9999999*999999988887777....2333...4689************668899**********************************************************************************************************************************************************************99334579********************************************96 PP

>> TIGR03375  type_I_sec_LssB: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  292.1   2.3   2.5e-89   1.7e-87     199     691 ..     262     756 ..     254     759 .. 0.95

  Alignments for each domain:
  == domain 1    score: 292.1 bits;  conditional E-value: 2.5e-89
   TIGR03375 199 lvfdlvlkllRsylldvagkkvdlilsaklfervlglrlea.rpasvGsfasqlrefesvrdfltsatltalvDLpf...vllfllvialiggplvlvplvavplvllvglllqkplsklaeeslresaqknallveslegletikalnaesrlqkkWeqvvaalakvslklrllsalltnlaalvqqlvsvavvvvGvyliaegeltmGgLiAaviLsgRalaPlaqlaglltryqqaktalesldelmklpvereeekrllsreklkGeielknvsfkYpee.ekaaLknvslkikpGekvaiiGriGsGKstllklllglyepteGsvlldgvdirqidpadlrrnigyvpqdvtLfyGtlrdNialgapaaedeellraaelaGvtefvkkhpkGldlqigerGesLSgGQrqavalaRallkdppillLDEPtsalDnsseekllerLkelladkTlvlvtHrtslLelvdriivldkGrivadGpkdevlea 691
                 +v+  ++ ++R+yl  +ag++v  +l ++lf++++  ++   +++ +G ++++l +  +v  + ++ t+   + L f   +l+ +++i++ +++l lv+l++vp++  v+++  + ++k++++ +++ aq  ++  e+l+ + t++  + e r  k++ ++v ++  ++ +  l   l  ++  +v q++ ++v+  G  l++ ge+t+ +L    + +    a l+ l+ l++ + +a  +  ++ +l++++  r   +  l+ ++++G+ie+++vsf+Yp + e+a+L+ v l i+pG+ va+ G  GsGKst+  l+ + yep++G++lldg+ ++ +d +  rr++++v+q+++Lf+ ++ +Ni +g +a++ +++ +aa++a + +f++  p+G+d+ +gerG +LSgGQ+q +a+aRall dp++llLDE tsalD++se+ + e++ +l+a++T v+v+Hr s ++ +d i v++kG+i+  G ++ ++++
  MMETSP1137-20121227|9213_1 262 FVVGGFFSFVRGYLFTLAGERVVARLRRRLFRHIIVQEIGFfDQSETGELMNRLASDTTV--IQSAVTINVSMGLRFgaqALIGMVLIFFESWKLSLVMLAVVPAIAFVAVAYGRFMKKVSKRYQAALAQASSVAQEALSSVRTVRSFAMEVREAKRYVSSVDESYGIGRQKALAYGLFGSIIGTVGQFAIILVLWYGGGLVIRGEMTLAALTSFLLYTIMIAACLGGLSDLFSSMMNALGSSVRVFQLLDRRP-RLALTGGLKLDDVRGRIEFRQVSFAYPSRaESAVLDAVDLLIEPGSVVALCGPSGSGKSTVVGLIEKWYEPQQGTILLDGTPLSLVDASWWRRQVALVAQEPVLFACSIAENIGYGLAAVTPDAVEAAADTANAAAFIRAFPNGFDTRVGERGLQLSGGQKQRIAIARALLIDPKMLLLDEATSALDAESEHVVQEAIDRLMAERTTVVVAHRLSTVRGADCICVVSKGKIIERGRHEDLIAQ 756
                 5555677899*************************999986256679*******988877..4578899999999996667899999************************************************************************************99999***************************************99999999***************9999999999998765.5788999*******************865166789********************************************************************************************************************************************************************************************************99988765 PP

>> TIGR01193  bacteriocin_ABC: ABC-type bacteriocin transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  262.0   0.0   3.8e-80   2.7e-78     195     707 ..     251     765 ..     244     766 .. 0.89

  Alignments for each domain:
  == domain 1    score: 262.0 bits;  conditional E-value: 3.8e-80
   TIGR01193 195 lgiislglilayilqqvlsyikafllivlgqrlsidiilsyikhlfelPmsffstrrvGeivsrftdaskiidalastilslfldlsilvivglvlvl.qniklfllslvaiPvyaviiilfkktfeklnkdameanavlnssiiedlnGietiksltseeerykk....idsefadylekslkyakaeavqqalkavlklilnvvilwvGallvirekltlGqlltfnallsyflnPleniinlqpklqaarvannrlnevylvdsefkekkkltelenlngdievndvsysyGy..gsevledislkikknekitlvGlsGsGkstlakllvkffqaesGeillngkslkdidkhelrqlinylPqePfifsGsilenlllgakenvsqeeikkaveiaeikddieklplGyqtelseeassisgGqkqrlalarallsdskvlildestsnldlltekkivenllk.lkdktiifvahrlsvakksdkiivldeGkiieqGshkellkenGfyaslih 707
                 l  + l l +++++   +s+++ +l+++ g r+   +  +  +h++   + ff    +Ge++ r++  +++i++  ++ +s+ l +    ++g+vl++    kl l++l ++P+ a + +++ + ++k++k    a a  +s   e l+ + t++s++ e  + k+    +d+ +    +k+l+y       +++ +v +++ ++++lw+G  lvir+++tl  l +f +        l  + +l + + +a  +  r+ +++        +    +l  ++g ie+ +vs+ y     s vl+ ++l i+  ++++l G sGsGkst++ l+ k++++++G+ill+g+ l+ +d +  r+ ++ + qeP++f+ si en+  g    v+ + +++a + a+  + i+ +p G++t++ e + ++sgGqkqr+a+arall d k+l+lde+ts ld   e+ + e + + + ++t + vahrls  + +d i v+++Gkiie G h++l++++G y++l++
  MMETSP1137-20121227|9213_1 251 LRRVVLQLSFIFVVGGFFSFVRGYLFTLAGERVVARLRRRLFRHIIVQEIGFFDQSETGELMNRLASDTTVIQSAVTINVSMGLRFGAQALIGMVLIFfESWKLSLVMLAVVPAIAFVAVAYGRFMKKVSKRYQAALAQASSVAQEALSSVRTVRSFAMEVREAKRyvssVDESYGIGRQKALAYGL---FGSIIGTVGQFA-IILVLWYGGGLVIRGEMTLAALTSFLLYTIMIAACLGGLSDLFSSMMNALGSSVRVFQLLDRRPRLALTG-GLKLDDVRGRIEFRQVSFAYPSraESAVLDAVDLLIEPGSVVALCGPSGSGKSTVVGLIEKWYEPQQGTILLDGTPLSLVDASWWRRQVALVAQEPVLFACSIAENIGYGL-AAVTPDAVEAAADTANAAAFIRAFPNGFDTRVGERGLQLSGGQKQRIAIARALLIDPKMLLLDEATSALDAESEHVVQEAIDRlMAERTTVVVAHRLSTVRGADCICVVSKGKIIERGRHEDLIAQDGLYKKLVQ 765
                 55677889999******************************************************99999999999999****************987256799********************999999998888888888899************998665544111144445545555555543...445566666665.6889********************99999999999********************999887777777776.478999**************8621567*******************************************************************************98886.6799*******************************************************************9998776655442579*********************************************986 PP

>> TIGR02857  CydD: thiol reductant ABC exporter, CydD subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.5       1.7   1.2e+02     114     167 ..      54     110 ..      44     128 .. 0.79
   2 !  256.2   6.7   2.3e-78   1.6e-76       5     528 ..     209     738 ..     206     739 .. 0.91

  Alignments for each domain:
  == domain 1    score: -0.8 bits;  conditional E-value: 1.7
   TIGR02857 114 lddYfarylpqlvlavivplvilaavltadwisal.illltlPl..ipiFmiLiGsa 167
                 l++Y  ++    +++ ++p  + a  + a+ ++a+ +ll+t+ l  +pi   L+G  
  MMETSP1137-20121227|9213_1  54 LQGYAYHWSADELQSSLTPYSFSATTVDASGLAAVgVLLCTVCLciVPIVGTLLGVC 110
                 7899999999999999***99999888888777764899997652277777777765 PP

  == domain 2    score: 256.2 bits;  conditional E-value: 2.3e-78
   TIGR02857   5 lalaallgvvsallliaqAallarvvssli....aagealaelltalaalalvlllRallawlkeaaaaraaaevksqlrerllekvaalGpavlqkkksgelatlllegvdalddYfarylpqlvlavivplvilaavltadwisalillltlPlipiFmiLiGsaaqaaarkqlaalsrLsghfldlvrglptLklfgrakaeaaa.ikriseeyrerTmevLriAfLSslvLellatlsvAlvAVyiGlrllagkldlaegLlvLlLaPevylPlRqlgaqyHakaegvaaaealvevldaeeqpe.aekapltaaassslelenvsvayegrk..palkevsltvepgelvalvGaSGaGKstllklllgfvepteGailvngaelaeldadswrkqiawvpQkPllfegtvaenirlarkdaseaevkealeragldelvkalpqgleteiGergagLSgGqrqRlaLArallrdapllllDEPtahLDaeteaevlealrelaegrtvllvaHrlalaeladkivv 528
                 l++a ++ + s+   +a+  l+++++ ++i    a+    + l+  ++ l  ++++   +++++ ++ + a+ +v++ lr+rl++++  +      ++++gel+  l+  +  +++ ++  +   +      l+ ++ +++++w   l++l ++P i +  +  G+  ++++++ +aal++ s+  ++ ++ + t++ f+ + +ea++ + ++ e+y     + L   +  s ++  +   ++ lv  y G  ++ g+++la+    Ll    + + l  l+  +   +++  ++  ++++ld++++    +  +l++ +  ++e+++vs+ay+ r   ++l+ v+l +epg++val+G+SG+GKst++ l+    ep++G+il++g++l+ +da+ wr+q+a v+Q+P+lf+ ++aeni  + +  + ++v++a++ a+++ +++a p+g++t++Gerg +LSgGq+qR+a+Arall d ++lllDE t++LDae+e+ v+ea+++l+ +rt+++vaHrl++++ ad i v
  MMETSP1137-20121227|9213_1 209 LVVATVALFFSTASTMAMPGLVGELLGGVIggdgAHDDREEGLRRVVLQLSFIFVVGGFFSFVRGYLFTLAGERVVARLRRRLFRHIIVQEIGFFDQSETGELMNRLASDTTVIQSAVTINVSMGLRFGAQALIGMVLIFFESWKLSLVMLAVVPAIAFVAVAYGRFMKKVSKRYQAALAQASSVAQEALSSVRTVRSFAMEVREAKRyVSSVDESYGIGRQKALAYGLFGS-IIGTVGQFAIILVLWYGGGLVIRGEMTLAALTSFLLYTIMIAACLGGLSDLFSSMMNALGSSVRVFQLLDRRPRLAlTGGLKLDDVR-GRIEFRQVSFAYPSRAesAVLDAVDLLIEPGSVVALCGPSGSGKSTVVGLIEKWYEPQQGTILLDGTPLSLVDASWWRRQVALVAQEPVLFACSIAENIGYGLAAVTPDAVEAAADTANAAAFIRAFPNGFDTRVGERGLQLSGGQKQRIAIARALLIDPKMLLLDEATSALDAESEHVVQEAIDRLMAERTTVVVAHRLSTVRGADCICV 738
                 5566666666777777777777777777742221344445589999999999*************************************999999***********************9999999999999*********************************************************************99888775388889999999999999887766.56789999999**999999999******9877778888888899**************************44444303334444444.3***********888767899******************************************************************************************************************************************************************************************9876 PP

>> TIGR01192  chvA: glucan exporter ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  250.3   3.5   1.2e-76   8.3e-75      83     570 ..     278     767 ..     194     780 .. 0.78

  Alignments for each domain:
  == domain 1    score: 250.3 bits;  conditional E-value: 1.2e-76
   TIGR01192  83 lahgrrat.llteafgriismplswhsqrgtsnalhtllrasetlfglwlefmrqhla.tfvallllipvalamdlrlslvlvvl..givyvlia..klvmsrtkegqaaveeyyhsvfkhvsdsisnvsvvhsynrieaetkalkkftekllsaqypvldwwalasgln.riasti...slviilvigtvlvkkgelsvgeviafigfanlligrldqlkafvtqivearakledffdledsvkereepadarelknvkgavefrdisfefanssq.gvrd.vsfeakagqtvaivgptgagkttlinllqrvydpksgqilidgvdiatvtreslrksiatvfqdagllnrsirenirlgredatdeevveaakaaaasdfiekrlkgydtlvgergnrlsggerqrlaiarailknapilvldeatsaldvetearvkdaidalrknrttfiiahrlstvreadlvlfldqgrliekgsfdeliqkdgrfakllras 570
                 la  r ++ l  + f  ii   + + +q  t + +  l   +  + +     +   l   + al+ ++ + +   ++lslv++++  +i++v +a  +++ + +k  qaa+ +      +   +++s v  v+s+     e ++ k++   +    y +    ala gl   i  t+   +++++l  g  lv++ge+++  + +f+ ++ ++   l  l+++ + +++a       f+l d        +   +l++v+g +efr++sf ++  ++  v d v + +  g  va+ gp+g+gk+t++ l+++ y+p++g il+dg+ ++ v+    r+ +a v q+  l+  si eni  g    t + v +aa++a a+ fi    +g+dt vgerg +lsgg++qr+aiara+l +  +l+ldeatsald e+e  v++aid l  +rtt ++ahrlstvr ad +  + +g++ie+g  ++li +dg ++kl+++ 
  MMETSP1137-20121227|9213_1 278 LAGERVVArLRRRLFRHIIVQEIGFFDQSETGELMNRLASDTTVIQSAVTINVSMGLRfGAQALIGMVLI-FFESWKLSLVMLAVvpAIAFVAVAygRFMKKVSKRYQAALAQAS----SVAQEALSSVRTVRSFAM---EVREAKRYVSSV-DESYGIGRQKALAYGLFgSIIGTVgqfAIILVLWYGGGLVIRGEMTLAALTSFLLYTIMIAACLGGLSDLFSSMMNALGSSVRVFQLLDRRPRLALTG-GLKLDDVRGRIEFRQVSFAYPSRAEsAVLDaVDLLIEPGSVVALCGPSGSGKSTVVGLIEKWYEPQQGTILLDGTPLSLVDASWWRRQVALVAQEPVLFACSIAENIGYGLAAVTPDAVEAAADTANAAAFIRAFPNGFDTRVGERGLQLSGGQKQRIAIARALLIDPKMLLLDEATSALDAESEHVVQEAIDRLMAERTTVVVAHRLSTVRGADCICVVSKGKIIERGRHEDLIAQDGLYKKLVQRQ 767
                 4444443303345567777777888888888877777766665554433332333332033444444433.55679999987644226777666432677777899999987653....345688999999999975...555566665543.44566666666666663244555521167777778******************************************************876665555.557*****************98665156554999******************************************************************************************************************************************************************************************************************9875 PP

>> TIGR02868  CydC: thiol reductant ABC exporter, CydC subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   1.1       7.7   5.3e+02     132     179 ..      11      60 ..       7      94 .. 0.56
   2 !  217.9   7.0   7.5e-67   5.2e-65      83     530 .]     282     727 ..     279     727 .. 0.92

  Alignments for each domain:
  == domain 1    score: -3.3 bits;  conditional E-value: 7.7
   TIGR02868 132 vPlvvAlvvalaav..aliallsvaaalvlaaallvalvvaplvslraar 179
                 +P  +A++v + +   +++a+l    a+++ ++   al+ a +++  a  
  MMETSP1137-20121227|9213_1  11 LPHRTAVLVCITSFfaLFTAALPHRTAVLVCITSFFALFTALVLQGYAYH 60 
                 78888988876654103344444444444444444444444444444444 PP

  == domain 2    score: 217.9 bits;  conditional E-value: 7.5e-67
   TIGR02868  83 rslgelRvrvYerLaraalallarlrrGdlLarlvaDvdalqdllvRvivPlvvAlvvalaavaliallsvaaalvlaaallvalvvaplvslraarsaeqalarlrselaaqlldllegaaelvvaGaleavlaqveeaereltraekraaaaealgaaltllaaGlavllallvgveavadgrlapvalAvlvLlpLaafealaalpaAaqqltrvraaaeRieevldakvevaeasapaaeaaasekptlelrdlsvsypgaee..vlkgvsldlepGervavvGasGaGKstLlallaglldplkGevtldgvsvaslsesevrrvvsvlaqdaHlFdttvreNlrlarpdatdeellaaLervgLadwlraLpdGldtklgeggarlSGGerqRlalARaLladapvllLDEPtehLDaeteeelledLlaaeegrtvvlvthrl 530
                 r++++lR r+++++  ++  +  + ++G+l++rl++D   +q  +   ++  +   + al+ ++li++ s+++ lv++a++ ++++va ++  r +++  ++ +++ ++ ++ ++++l+++ + + +    +  +++ +  +e+  + +++a a +l  ++   +   a++l+l+ g++ v  g+++ +al+ + L ++ +   l  l++ + ++ ++  +  R+ ++ld  +  a +   +  ++   + ++e+r++s++yp  +e  vl++v+l +epG+ va+ G+sG+GKst++ l+ +  +p++G+++ldg++++ ++ s  rr v+++aq++ lF+ ++ eN+  + + +t + ++aa   +  a  +ra+p+G dt++ge+g +lSGG++qR+a+ARaLl d ++llLDE t  LDae e+ + e++   +++rt+v+v+hrl
  MMETSP1137-20121227|9213_1 282 RVVARLRRRLFRHIIVQEIGFFDQSETGELMNRLASDTTVIQSAVTINVSMGLRFGAQALIGMVLIFFESWKLSLVMLAVVPAIAFVA-VAYGRFMKKVSKRYQAALAQASSVAQEALSSVRTVRSFAMEVREAKRYVSSVDESYGIGRQKALAYGLFGSIIGTVGQFAIILVLWYGGGLVIRGEMTLAALTSFLLYTIMIAACLGGLSDLFSSMMNALGSSVRVFQLLDRRPRLALTGGLKLDDV---RGRIEFRQVSFAYPSRAEsaVLDAVDLLIEPGSVVALCGPSGSGKSTVVGLIEKWYEPQQGTILLDGTPLSLVDASWWRRQVALVAQEPVLFACSIAENIGYGLAAVTPDAVEAAADTANAAAFIRAFPNGFDTRVGERGLQLSGGQKQRIAIARALLIDPKMLLLDEATSALDAESEHVVQEAIDRLMAERTTVVVAHRL 727
                 77899************************************99887777776666666777778888889999999988877666654.56678888888888888899999999999999999999999999999999999999**************************************************************************************944444443333333...358***********988778***********************************************************************************************************************************************************************************96 PP

>> TIGR01842  type_I_sec_PrtD: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  212.5   3.0     3e-65   2.1e-63      49     542 ..     255     755 ..     247     756 .. 0.87

  Alignments for each domain:
  == domain 1    score: 212.5 bits;  conditional E-value: 3e-65
   TIGR01842  49 tvlvvvlylvlglleavRskvlvrigekldkalnkkifkaaieatlerkkk.eslqal....rDldqlrqFltgtgliaffDlPwlpiyllvvfllhpy.lGllalvgavvlvalallneaatkkklkeateasikanklldsalrnaeviealgmlkeltkrWeklkskalsaqsaasdragalsalskvlRivlqslvlglGaylaikgeitaGmi...iagsilvgraLaPidqaievWkqfsaarkaykrlkelleelpareea..lklPepegelevenvslvppee.kkktlkgisfalkaGealaiiGpsgsGkssLarllvGvwlpasGsvrlDgadlkqwdretlGksiGYlPqdveLfeGtvaeniaRfeenadaekvieaaklagvhelilrlpkGYdteigegGaaLsgGqrqRiaLaRalygdPklvvLDePnanLDeeGeqalakalkelkarkitvvvithrpsllelvdkilvlkdGalkafGereevlk 542
                 ++ + ++++v g++  vR  +++  ge++  +l++++f+  i +++   ++ e+  ++    +D + +++ +t ++ + +       i ++++f ++ + l l++l+ +  +  +a+   ++ kk  k+ + a  +a++ +++al  +  +++++m  +  kr+ ++ +++    ++ + + g +++++ ++   + +lvl  G+ l+i+ge+t  ++   +   i+++  L+    + + + ++++a  +  r+ +ll++ p  + +  lkl +++g++e  +vs++ p+  +  +l  +++ +++G+++a+ GpsgsGks+++ l+   ++p++G++ lDg+ l+ +d     +++  + q+  Lf+ ++aeni      +++++v +aa  a++  +i  +p+G+dt +ge+G +LsgGq+qRia+aRal  dPk+++LDe  + LD+e e  + +a+ +l a++ t+vv++hr s ++ +d i v+++G++ + G++e++++
  MMETSP1137-20121227|9213_1 255 VLQLSFIFVVGGFFSFVRGYLFTLAGERVVARLRRRLFRHIIVQEIGFFDQsETGELMnrlaSDTTVIQSAVTINVSMGLRFGAQALIGMVLIF-FESWkLSLVMLAVVPAIAFVAVAYGRFMKKVSKRYQAALAQASSVAQEALSSVRTVRSFAMEVREAKRYVSSVDESYGIGRQKALAYGLFGSIIGTVGQFAIILVLWYGGGLVIRGEMTLAALtsfLLYTIMIAACLG---GLSDLFSSMMNALGSSVRVFQLLDRRPRLALTggLKLDDVRGRIEFRQVSFAYPSRaESAVLDAVDLLIEPGSVVALCGPSGSGKSTVVGLIEKWYEPQQGTILLDGTPLSLVDASWWRRQVALVAQEPVLFACSIAENIGYGLAAVTPDAVEAAADTANAAAFIRAFPNGFDTRVGERGLQLSGGQKQRIAIARALLIDPKMLLLDEATSALDAESEHVVQEAIDRLMAER-TTVVVAHRLSTVRGADCICVVSKGKIIERGRHEDLIA 755
                 45566889999*******************************9999443330333333111157777788888777777755555555555555.556624444444444566677778899999999999999***************************************99999999*********************************8876111344555555555...56667889*****************998776556****************99887615689999*****************************************************************************98888**********************************************************************************9877.56779**************************999886 PP

>> TIGR00957  MRP_assoc_pro: multi drug resistance-associated protein (MRP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  135.8   2.9   3.5e-42   2.4e-40    1019    1516 ..     266     763 ..     243     767 .. 0.83

  Alignments for each domain:
  == domain 1    score: 135.8 bits;  conditional E-value: 3.5e-42
   TIGR00957 1019 giavlgysmavsiggilasrvlhldllhnvlrspmsffertpsgnlvnrfskeldvvdsvlaevikmllgslf.nvigavivillatplaav...iilplallyflvqrfyvassrqlkrlesvsrspvyshfnetllgvsvirafeeqerfiiqsdlkvdenqkayypsivanrwlavrlelvgncivlfaalfa..visrsslsaglvglsvsyslqvtaylnwlvrmsseletnivaverlkeysetekeapwqieetappsswpksgrvefrnyslryredl.dlvlrdlnvtieggekvgivgrtgagkssltlglfrinesaegeiiidglniakiglhdlrfkltiipqdpvlfsgslrmnld.pfsqysdeevwlalelahlkdfvsalpdkldfecaeggenlsvgqrqlvclarallrktkilvldeataavdletdnliqstirtqfedctvltiahrlntimdytrvlvldkgevaefdapsellqqrgifysm 1516
                  g+  +      ++ g     +l   l+  ++     ff+++ +g+l+nr++ +  v++s ++  + m l     + ig v++ + +  l  v   +++ +a++ +   rf    s+   r    + +   s  +e+l  v  +r+f  + r  ++    vde       + +a   +   +  vg+  +++   +   ++ r  ++   +   + y++ ++a l  l  + s +   + +  r+ +    ++     + +    +    +gr+efr+ s+ y       vl  +++ ie g  v + g +g+gks++   + +  e  +g i +dg  ++ +     r +++++ q+pvlf+ s+  n+   ++  + + v  a + a   +f+ a p+++d +  e g +ls gq+q + +arall   k+l+ldeat+a+d e+++++q +i   + + t + +ahrl t+     + v+ kg++ e +   +l++q g++  +
  MMETSP1137-20121227|9213_1  266 GFFSFVRGYLFTLAGERVVARLRRRLFRHIIVQEIGFFDQSETGELMNRLASDTTVIQSAVTINVSMGLRFGAqALIGMVLIFFESWKLSLVmlaVVPAIAFVAVAYGRFMKKVSK---RY-QAALAQASSVAQEALSSVRTVRSFAMEVREAKRYVSSVDESYGIGRQKALAYGLFGSIIGTVGQFAIILVLWYGggLVIRGEMTLAALTSFLLYTIMIAACLGGLSDLFSSMMNALGSSVRVFQLL--DRRPRLALTG--GLKLDDVRGRIEFRQVSFAYPSRAeSAVLDAVDLLIEPGSVVALCGPSGSGKSTVVGLIEKWYEPQQGTILLDGTPLSLVDASWWRRQVALVAQEPVLFACSIAENIGyGLAAVTPDAVEAAADTANAAAFIRAFPNGFDTRVGERGLQLSGGQKQRIAIARALLIDPKMLLLDEATSALDAESEHVVQEAIDRLMAERTTVVVAHRLSTVRGADCICVVSKGKIIERGRHEDLIAQDGLYKKL 763 
                  5555555556666677777789999**********************************999888887765441556666666666666555111333444444444455444443...33.344556678889************99999999999999*999999999999999999999999876665555532245555555555555678******************999998887776554..4444445544..45556789************87651589**************************9988899*********************************************9736899999****************************************************************************9999999999*************************************99765 PP

>> TIGR00972  3a0107s01c2: phosphate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  135.3   0.0   6.7e-42   4.6e-40       4     233 ..     532     756 ..     529     772 .. 0.92

  Alignments for each domain:
  == domain 1    score: 135.3 bits;  conditional E-value: 6.7e-42
   TIGR00972   4 vknlklfy...gekealkdvnleikknkvtaliGpsGcGkstllrslnrlndlveevrieGkvllegkdiydkkldvvelrkkvGmvfqkpnpfpmsiydnvayglrlkgikdkkeldeiveesLkkaalwdevkdklkksalsLsGGqqqrlciaralavePevlLlDePtsaLDpiatekieeliqeLkkkytivivthnmqqaarvsdktaffleGelveegeteqifek 233
                  +++++ y   +e  +l+ v+l i+  +v+al GpsG+Gkst++  + +  +       +G++ll+g+ +    +d+   r++v +v q+p  f+ si +n+ ygl +      ++  ++++++    a+ +   +++ + +l+LsGGq+qr++iaral ++P++lLlDe tsaLD+++ + ++e i+ L  + t v+v h ++ + r +d + ++ +G+++e g+ e+++ +
  MMETSP1137-20121227|9213_1 532 FRQVSFAYpsrAESAVLDAVDLLIEPGSVVALCGPSGSGKSTVVGLIEKWYEPQ-----QGTILLDGTPLS--LVDASWWRRQVALVAQEPVLFACSIAENIGYGLAAVTPDAVEAAADTANAAAFIRAFPNGFDTRVGERGLQLSGGQKQRIAIARALLIDPKMLLLDEATSALDAESEHVVQEAIDRLMAERTTVVVAHRLS-TVRGADCICVVSKGKIIERGRHEDLIAQ 756
                 55666666333466799*******************************999987.....8********986..579*******************************999999999999999999999**************************************************************************97.6799*****************9998865 PP

>> TIGR00968  3a0106s01: sulfate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  118.2   0.0   1.2e-36   8.7e-35      12     219 ..     544     754 ..     530     765 .. 0.89

  Alignments for each domain:
  == domain 1    score: 118.2 bits;  conditional E-value: 1.2e-36
   TIGR00968  12 dfqalddvdlevktGslvallGpsGsGkstllrviaGlekpdsGrilleGrdvtrvkvr..dreiGfvfqhyalfkhltvrdniafGleirkkdkakikakveellelvql..eklgdryps...qlsGGqrqrvalaralavepqvllldepfgaldakvrkelrawlrklhdevkvttvfvthdqeealevadrivvlekGkieqvgsaeevy 219
                 +  +ld vdl ++ Gs+val GpsGsGkst++ +i    +p++G+ill+G+  + v++   +r++ +v q+  lf   ++ +ni +Gl     d+ +  a   +   +++   ++++ r  +   qlsGGq+qr+a+aral ++p++lllde  +alda+  + +++ + +l  e   ttv+v+h  + ++  ad i v++kGki++ g  e++ 
  MMETSP1137-20121227|9213_1 544 ESAVLDAVDLLIEPGSVVALCGPSGSGKSTVVGLIEKWYEPQQGTILLDGTPLSLVDASwwRRQVALVAQEPVLFA-CSIAENIGYGLAAVTPDAVEAAADTANAAAFIRAfpNGFDTRVGErglQLSGGQKQRIAIARALLIDPKMLLLDEATSALDAESEHVVQEAIDRLMAE--RTTVVVAHRLS-TVRGADCICVVSKGKIIERGRHEDLI 754
                 5679***********************************************99988764349*************7.69************99999999999999988875346788776543449**********************************************886..69******876.6788*************999888875 PP

>> TIGR03258  PhnT: 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  115.5   0.1   8.6e-36     6e-34      12     228 ..     533     754 ..     523     768 .. 0.85

  Alignments for each domain:
  == domain 1    score: 115.5 bits;  conditional E-value: 8.6e-36
   TIGR03258  12 eslrvaygar...vvlddlsleieaGellallGksGsGkttllravaGfvkadGGrllvadrdl..thlppykrnlallvqnyalfphlkveenvafGlrarkqskaliaervadalklvql.....sdaaarlpaqlsGGqqqrvalaralvvrpdvllldeplsaldaqlrasvveelkalhrelpeltvlyvthdrdealvladkillmkeGslialGetraly 228
                  +++ ay +r   +vld + l ie+G ++al G+sGsGk+t++ ++  + +++ G++l+ ++ l    +  ++r++al+ q+  lf    + en+ +Gl a      + a   a+a   ++           +   qlsGGq+qr+a+aral ++p++lllde  salda+  + v+e + +l     e t ++v+h r  ++  ad i ++ +G++i+ G  ++l 
  MMETSP1137-20121227|9213_1 533 RQVSFAYPSRaesAVLDAVDLLIEPGSVVALCGPSGSGKSTVVGLIEKWYEPQQGTILLDGTPLslVDASWWRRQVALVAQEPVLFA-CSIAENIGYGLAAVTPDAVEAAADTANAAAFIRAfpngfDTRVGERGLQLSGGQKQRIAIARALLIDPKMLLLDEATSALDAESEHVVQEAIDRLM---AERTTVVVAH-RLSTVRGADCICVVSKGKIIERGRHEDLI 754
                 55666776552227***********************************************97611577889**************7.689**********99888888888888887776411110333445578******************************************999985...6789999999.6678899****************988775 PP

>> TIGR03864  PQQ_ABC_ATP: ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  111.7   0.0   1.1e-34   7.5e-33       2     224 ..     530     758 ..     529     767 .. 0.83

  Alignments for each domain:
  == domain 1    score: 111.7 bits;  conditional E-value: 1.1e-34
   TIGR03864   2 leveglsfaygkr...ralddvsltvakgefvaLLGpnGaGkstLfslltrLyeakegeikvaGldlrrapkeal.arlGvvfqqstlDldlsveqnlry.haaLh..Glsraeaeerieealarl..glaeraeekvreLnGGhrrrveiarallhePklLLlDeatvGLDiesraalveevrelvreeglsvLWathlvdeveaedrlvvlhkGkvlaqGaaaelaaead 224
                 +e +++sfay +r   ++ld v+l +++g++vaL Gp G+Gkst++ l+ + ye ++g+i + G+ l+    +   +++ +v q++ l    s+++n+ y  aa+    +  a+ +++ ++ ++ +  g+  r  e+  +L+GG+++r+ iarall +Pk+LLlDeat  LD+es + ++e++ +l++e+   v    h +  v+ +d + v+ kGk+  +G+ ++l a+ +
  MMETSP1137-20121227|9213_1 530 IEFRQVSFAYPSRaesAVLDAVDLLIEPGSVVALCGPSGSGKSTVVGLIEKWYEPQQGTILLDGTPLSLVDASWWrRQVALVAQEPVL-FACSIAENIGYgLAAVTpdAVEAAADTANAAAFIRAFpnGFDTRVGERGLQLSGGQKQRIAIARALLIDPKMLLLDEATSALDAESEHVVQEAIDRLMAERTTVV--VAHRLSTVRGADCICVVSKGKIIERGRHEDLIAQDG 758
                 677899999965522279*************************************************987776651678888888877.679********44555411333333334444444443338999*******************************************************7776655..47999*************************998755 PP

>> TIGR02769  nickel_nikE: nickel import ATP-binding protein NikE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0       2.5   1.7e+02      90     126 ..     390     426 ..     364     435 .. 0.76
   2 !  105.4   0.0   1.1e-32   7.6e-31      12     240 ..     532     755 ..     521     776 .. 0.86

  Alignments for each domain:
  == domain 1    score: -0.7 bits;  conditional E-value: 2.5
   TIGR02769  90 vqlvfqdsisavnprksvreiigePlrhltsldeser 126
                    v q++ s+v + +s    ++e  r + s+des  
  MMETSP1137-20121227|9213_1 390 ASSVAQEALSSVRTVRSFAMEVREAKRYVSSVDESYG 426
                 3468899******************999999999865 PP

  == domain 2    score: 105.4 bits;  conditional E-value: 1.1e-32
   TIGR02769  12 yrtggllg.kkqrkavldnvslsleeGetvallGrsGaGkstlarlllGlekPakGevsfrGqdlakldrkqrkafrrdvqlvfqdsisavnprksvreiigePlrhlt..sldeserkariaellelvelr.sevldklPrqlsGGqlqriniaralavePklivldeavsnldlvlqasilellkklkqefGlaylfithdlrlvqkfaqrvlvldeGqiveeikvaells 240
                 +r+ ++    ++  avld v+l +e G  val G sG+Gkst+  l+    +P++G++   G +l+ +d +     rr+v lv q+    v    s+ e ig  l  +t   +++++  a +a+++++     +  +  +  qlsGGq qri+iaral ++Pk+++ldea s ld     ++ e + +l +e     ++++h l+ v+  a+ + v+ +G+i+e+ +  +l++
  MMETSP1137-20121227|9213_1 532 FRQVSFAYpSRAESAVLDAVDLLIEPGSVVALCGPSGSGKSTVVGLIEKWYEPQQGTILLDGTPLSLVDAS---WWRRQVALVAQEP---VLFACSIAENIGYGLAAVTpdAVEAAADTANAAAFIRAFPNGfDTRVGERGLQLSGGQKQRIAIARALLIDPKMLLLDEATSALDAESEHVVQEAIDRLMAERT--TVVVAHRLSTVRG-ADCICVVSKGKIIERGRHEDLIA 755
                 56666666688999****************************************************99976...579******9985...4556789999999999886446999999********9985441556788899***********************************************99975..5889*****9975.89999*********987666554 PP

>> TIGR01186  proV: glycine betaine/L-proline transport ATP binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  105.9   0.0   7.2e-33     5e-31       9     219 ..     548     755 ..     542     784 .. 0.87

  Alignments for each domain:
  == domain 1    score: 105.9 bits;  conditional E-value: 7.2e-33
   TIGR01186   9 vndvdleieeGeiiviiGlsGsGkstlvrllnrliePtaGkilidGediaeisdaelrevrrkkiamviqkialfPhmtildnislglellkideqerkekalealklvdl..eeyedryPd...elsGGmqqrvGlaralaaePdlllmdeafsaldPlirdelqdelvklqkklqktivfithdldealrlgdrivilkaGeivqvGtPdeilr 219
                 ++ vdl ie G ++ + G+sGsGkst+v l+++  eP +G il+dG  +  ++        r+++a+v q+  lf   +i +ni +gl     d+ e    + +a   +    +++  r  +   +lsGG++qr+ +aral ++P++ll+dea sald    + +q+ + +l +  ++t v ++h l  ++r +d i ++ +G+i+  G  ++++ 
  MMETSP1137-20121227|9213_1 548 LDAVDLLIEPGSVVALCGPSGSGKSTVVGLIEKWYEPQQGTILLDGTPLSLVDASWW----RRQVALVAQEPVLFA-CSIAENIGYGLAAVTPDAVEAAADTANAAAFIRAfpNGFDTRVGErglQLSGGQKQRIAIARALLIDPKMLLLDEATSALDAESEHVVQEAIDRLMA--ERTTVVVAHRLS-TVRGADCICVVSKGKIIERGRHEDLIA 755
                 5679********************************************999888877....99*********9997.68*********99988877766555555555543345566665543338********************************************9976..7999*******6.79*****************99998875 PP

>> TIGR01166  cbiO: cobalt ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  104.3   0.0   1.7e-32   1.2e-30       4     183 ..     544     724 ..     539     728 .. 0.91

  Alignments for each domain:
  == domain 1    score: 104.3 bits;  conditional E-value: 1.7e-32
   TIGR01166   4 eaevlkglnlavergevlallGanGaGkstlllhlnGllrPksGkvlldGeeldysrkgllelrkkvalvlqdpddqlfaadvdedvafgplnlGlseaeverrvrealaavdi..sgleerpth...llsgGekkrvaiagavalrpdvllldePtagldpaGaeqlleilrklreeGktvvis 183
                 e+ vl+ ++l +e g+v+al G+ G+Gkst++  ++    P++G++lldG++l     +   +r++valv q+p   lfa ++ e++ +g+  +  +  e+ +   +a a + +  +g++ r  +   +lsgG+k+r+aia a+ + p++lllde t+ ld++ ++ + e++++l +e +tvv++
  MMETSP1137-20121227|9213_1 544 ESAVLDAVDLLIEPGSVVALCGPSGSGKSTVVGLIEKWYEPQQGTILLDGTPLSLV--DASWWRRQVALVAQEP--VLFACSIAENIGYGLAAVTPDAVEAAADTANAAAFIRAfpNGFDTRVGErglQLSGGQKQRIAIARALLIDPKMLLLDEATSALDAESEHVVQEAIDRLMAERTTVVVA 724
                 5679************************************************9775..56679*********99..6****************999998998888898888876557899987653348******************************************************97 PP

>> TIGR03265  PhnT2: putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  104.9   0.0   1.6e-32   1.1e-30      17     221 ..     545     752 ..     530     758 .. 0.88

  Alignments for each domain:
  == domain 1    score: 104.9 bits;  conditional E-value: 1.6e-32
   TIGR03265  17 ftalkdislsvkkgelvclLGPsGCGkttLLriiaGLekqdaGaillggrditrl..ppqkrdyGivfqsYaLfPnltvaeniayGLknkklkreevaerveelLelv.....glsgseekyPgqlsGGqqqrvaLaralalsPglLLLDePlsaLDakvrekLreelkklqrklgvttimvthdqeealslaDrivvmnkgkieqvgtPee 221
                  ++l+ ++l ++ g +v+l GPsG Gk+t++ +i    ++++G+ill+g  ++ +  +  +r+  +v q  +Lf    +aeni+yGL +   +  e+a+  +++ + +     g+++       qlsGGq+qr+a+aral + P++LLLDe  saLDa   + ++e + +l  +   tt++v+h     +  aD i v+ kgki   g  e+
  MMETSP1137-20121227|9213_1 545 SAVLDAVDLLIEPGSVVALCGPSGSGKSTVVGLIEKWYEPQQGTILLDGTPLSLVdaSWWRRQVALVAQEPVLFA-CSIAENIGYGLAAVTPDAVEAAADTANAAAFIrafpnGFDTRVGERGLQLSGGQKQRIAIARALLIDPKMLLLDEATSALDAESEHVVQEAIDRLMAE--RTTVVVAHRLS-TVRGADCICVVSKGKIIERGRHED 752
                 57899*********************************************98865115569*************6.69***********99999999888888888875445566777777889***********************************999999999999765..69******865.7899************98887665 PP

>> TIGR01187  potA: polyamine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  104.7   0.0   1.5e-32   1.1e-30       1     189 [.     563     754 ..     563     760 .. 0.89

  Alignments for each domain:
  == domain 1    score: 104.7 bits;  conditional E-value: 1.5e-32
   TIGR01187   1 lLGpsGsGkttlLrllaGleeldsGkilldgedvtevpae..krsvnvvfqsyaLfPhmtveenvafgLkmrkvpkaeikervkeaLelvq.....leefakrkpsqlsGGqrqrvalaravvkkPkiLLlDeplsaLDkkLrdqmqlelkalqeklGitvvlvthDqeealtmsdriavlrkGkiaqigepeeiy 189
                 l GpsGsGk+t++ l+    e+++G illdg+ ++ v a   +r+v +v q+  Lf   +++en+ +gL     ++ e ++   +a   ++     ++++   +  qlsGGq+qr+a+ara+   Pk+LLlDe+ saLD +  + +q+ + +l  +   t+v+v+h  +  +  +d i v++kGki+  g  e++ 
  MMETSP1137-20121227|9213_1 563 LCGPSGSGKSTVVGLIEKWYEPQQGTILLDGTPLSLVDASwwRRQVALVAQEPVLFA-CSIAENIGYGLAAVTPDAVEAAADTANAAAFIRafpngFDTRVGERGLQLSGGQKQRIAIARALLIDPKMLLLDEATSALDAESEHVVQEAIDRLMAE--RTTVVVAHRLS-TVRGADCICVVSKGKIIERGRHEDLI 754
                 57******************************99999885449*************7.79**********999999898888888877776322335666677899********************************************999887..5999****765.7899*************999988875 PP

>> TIGR02982  heterocyst_DevA: ABC exporter ATP-binding subunit, DevA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  104.2   0.0   2.2e-32   1.5e-30       4     219 ..     532     744 ..     529     745 .. 0.87

  Alignments for each domain:
  == domain 1    score: 104.2 bits;  conditional E-value: 2.2e-32
   TIGR02982   4 irelnhyygkgelrkqvlfdinleiepgeiviltGpsGsGkttlltligglrsvqeGelkvlgkelkgasekelvqvrrkiGyifqahnllesltaeqnvr..malelkeklsakeakakaeelleav..gleerldykpedlsgGqkqrvaiaralvarPklvladePtaaldkksgrevvellqklareqgttillvthdnrildvadrivkmedGkl 219
                  r+++  y + +++  vl  ++l iepg +v l GpsGsGk t++ li    + q+G++ + g+ l+ ++ +     rr++ ++ q+  l+ +  a +n+   +a+   ++++a++ +a+a+++++a   g++ r+  +  +lsgGqkqr+aiaral   Pk++l de t+ald++s + v e + +l  e++   ++v+h    +  ad i  + +Gk+
  MMETSP1137-20121227|9213_1 532 FRQVSFAYPS-RAESAVLDAVDLLIEPGSVVALCGPSGSGKSTVVGLIEKWYEPQQGTILLDGTPLSLVDAS---WWRRQVALVAQEPVLFACSIA-ENIGygLAAVTPDAVEAAADTANAAAFIRAFpnGFDTRVGERGLQLSGGQKQRIAIARALLIDPKMLLLDEATSALDAESEHVVQEAIDRLMAERT--TVVVAHRLSTVRGADCICVVSKGKI 744
                 5666666654.56789************************************************99998765...67**************99766.577611455556678889999999999998655999*******************************************************99985..5678999888888999999988887 PP

>> TIGR02142  modC_ABC: molybdate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  103.8   0.0   3.5e-32   2.4e-30      16     227 ..     551     762 ..     539     778 .. 0.86

  Alignments for each domain:
  == domain 1    score: 103.8 bits;  conditional E-value: 3.5e-32
   TIGR02142  16 vdlelpgkgvtalFGrsGsGktslirliaGLtrpdegeivldgevlqdsrkkiilppekRrvgyvFqeArLFpHlsvrenLrYGlkraraeerri.....seekvielL..giehLleRlpgkLsGGekqRvaigRAlLssPeLLlmDePLaaLDekrkkeilPyLerlsaelkiPilyvsHsldevarladrvvvledGrvkaagkleevlaskdls.l 227
                 vdl ++   v+al G sGsGk++++ li     p++g i ldg+ l      ++ +  +R+v+ v qe  LF+  s++en+ YGl  ++++  ++     + ++ i+    g +  +  +  +LsGG kqR+ai+RAlL +P++Ll+De  +aLD ++ + +   ++rl ae +   + v+H l+ v r ad + v+ +G++   g  e+++a+  l   
  MMETSP1137-20121227|9213_1 551 VDLLIEPGSVVALCGPSGSGKSTVVGLIEKWYEPQQGTILLDGTPLSL----VDASWWRRQVALVAQEPVLFA-CSIAENIGYGLAAVTPDAVEAaadtaNAAAFIRAFpnGFDTRVGERGLQLSGGQKQRIAIARALLIDPKMLLLDEATSALDAESEHVVQEAIDRLMAERT--TVVVAHRLSTV-RGADCICVVSKGKIIERGRHEDLIAQDGLYkK 762
                 456666669***********************************9975....55699***************8.69**********999887654111114555666545578999999999************************************************9986..6889*****98.67*********************999877543 PP

>> TIGR02673  FtsE: cell division ATP-binding protein FtsE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.1   0.0     1e-31   7.1e-30       2     195 ..     530     725 ..     529     741 .. 0.88

  Alignments for each domain:
  == domain 1    score: 102.1 bits;  conditional E-value: 1e-31
   TIGR02673   2 ielekvskeya..agveaLkdvslkiekgeflfltGasGaGkttllklllgaekpsrGevevagedvarlrerelpllRrkigvvfqDfkllkdrtvlenvalalevrgkkeeeiqkrveevlelv.....gledkakalpeelsgGeqqRvaiaRaivnkPelllaDePtGnlDdelserildllkelnkrGttvivath 195
                 ie+++vs++y+  a+ ++L+ v+l ie+g+++ l G+sG+Gk+t++ l+ +  +p++G++ ++g+ ++ ++    +  Rr++++v q+  +l + +++en+   l     ++ e      ++   +     g++ ++ +   +lsgG +qR+aiaRa++ +P++ll De t  lD+e ++ + + + +l ++ ttv+va h
  MMETSP1137-20121227|9213_1 530 IEFRQVSFAYPsrAESAVLDAVDLLIEPGSVVALCGPSGSGKSTVVGLIEKWYEPQQGTILLDGTPLSLVDA---SWWRRQVALVAQEP-VLFACSIAENIGYGLAAVTPDAVEAAADTANAAAFIrafpnGFDTRVGERGLQLSGGQKQRIAIARALLIDPKMLLLDEATSALDAESEHVVQEAIDRLMAERTTVVVA-H 725
                 89********95456679***********************************************9988765...689*********96.667899*******9998776666665555555444433366999**************************************************************998.4 PP

>> TIGR00960  3a0501s02: type II secretory pathway family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  100.3   0.0   3.9e-31   2.7e-29       2     196 ..     530     726 ..     529     744 .. 0.84

  Alignments for each domain:
  == domain 1    score: 100.3 bits;  conditional E-value: 3.9e-31
   TIGR00960   2 ikfeqvskaykgaaela.ldnvtvkiekGelvflvGhsGaGkstllklilgiekpsaGkirvsgqdltklrdrevpflrrqiGivfqdfkllsdrtvydnvalalriiGvkgreie.e..rvsaalek..vGlkdkakalPvqlsgGeqqrvaiaravvnkPallladePtgnlddelsrdilelleevnraGttvlvath 196
                 i+f+qvs ay++ ae a ld v + ie G++v l G+sG+Gkst++ li +  +p++G i++ g +l+ +   + +  rrq+ +v q+  +l   ++ +n+   l  +   + e+  +   + a ++    G+  +  +   qlsgG++qr+aiara++ +P++ll de t+ ld e  + + e ++++    ttv+va  
  MMETSP1137-20121227|9213_1 530 IEFRQVSFAYPSRAESAvLDAVDLLIEPGSVVALCGPSGSGKSTVVGLIEKWYEPQQGTILLDGTPLSLV---DASWWRRQVALVAQEP-VLFACSIAENIGYGLAAVTPDAVEAAaDtaNAAAFIRAfpNGFDTRVGERGLQLSGGQKQRIAIARALLIDPKMLLLDEATSALDAESEHVVQEAIDRLMAERTTVVVAHR 726
                 89**********888765899*******************************************998765...56799*********86.66778999***999987765443332020022233443226******************************************************************9853 PP

>> TIGR02315  ABC_phnC: phosphonate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.5   0.0     6e-31   4.2e-29       2     232 ..     530     752 ..     529     761 .. 0.84

  Alignments for each domain:
  == domain 1    score: 99.5 bits;  conditional E-value: 6e-31
   TIGR02315   2 levenlskvypn..gkqalknvnleikkGelvaviGlsGaGkstllrsinrlveissgsillegkevtklkkkelrklrkkigmifqeynlierltvlenvLsgrlgakstlksllglfseedkekAlelLerv..glaelaakradqLsGGqqqRvaiaRalaqqpklilaDEPiasLDpksskqvmdllkrinkekgitvivnlHqvdlakkyadrivglkageivfdgasse 232
                 +e++++s  yp+  ++++l++v+l i++G +va+ G+sG+Gkst++  i++  e+++g+ill+g+ ++ +   +   +r++++++ qe  l    ++ en+  g  ++++      +    +d+++A + ++ +  g++    +r  qLsGGq+qR+aiaRal+ +pk++l DE +++LD +s + v +++ r+  e+  t++v  H+++ ++  ad i  + +g+i+ +g  ++
  MMETSP1137-20121227|9213_1 530 IEFRQVSFAYPSraESAVLDAVDLLIEPGSVVALCGPSGSGKSTVVGLIEKWYEPQQGTILLDGTPLSLV---DASWWRRQVALVAQEPVLF-ACSIAENIGYGLAAVTPDAV---EA--AADTANAAAFIRAFpnGFDTRVGERGLQLSGGQKQRIAIARALLIDPKMLLLDEATSALDAESEHVVQEAIDRLMAER--TTVVVAHRLSTVRG-ADCICVVSKGKIIERGRHED 752
                 788999999997325679***********************************************99855...66789**********8776.57899***999988877544...33..3444444444444333999*******************************************************9886..55556799988764.88888899999887776665 PP

>> TIGR03005  ectoine_ehuA: ectoine/hydroxyectoine ABC transporter, ATP-binding protein EhuA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.2   0.1   2.6e-30   1.8e-28      13     236 ..     545     755 ..     530     761 .. 0.89

  Alignments for each domain:
  == domain 1    score: 97.2 bits;  conditional E-value: 2.6e-30
   TIGR03005  13 ltvldglelevaaGekvaliGpsGsGkstilrilmtletideGsikvegeqlyhmkgrkGklvpadekhlrkvrekiGmvfqsfnlfphktvldnvt..eapvlvkGvaraeaekravelldmv..GladkadalpaqlsGGqkqrvaiaralalrpkvllfdevtsaldpelveevlnvlrrlasetdltmllvthemgfarefadrvlffdkGkiveeGkpdeifr 236
                   vld ++l +++G  val GpsGsGkst++ ++    + ++G+i ++g  l        +lv+a+       r ++ +v q+  lf   ++ +n+   +a v    v+ a+  + a  ++     G+  +  +   qlsGGqkqr+aiaral + pk+ll+de+tsald e    v + + rl +e+  t ++v+h++   r  ad ++   kGki+e+G+ +++  
  MMETSP1137-20121227|9213_1 545 SAVLDAVDLLIEPGSVVALCGPSGSGKSTVVGLIEKWYEPQQGTILLDGTPL--------SLVDAS-----WWRRQVALVAQEPVLFAC-SIAENIGygLAAVTPDAVEAAADTANAAAFIRAFpnGFDTRVGERGLQLSGGQKQRIAIARALLIDPKMLLLDEATSALDAESEHVVQEAIDRLMAER--TTVVVAHRLSTVRG-ADCICVVSKGKIIERGRHEDLIA 755
                 579*********************************9999*******88665........465565.....47999***********85.677998533799999999999988888888876444999********************************************9999********997..7899******9986.9*****************99976 PP

>> TIGR03873  F420-0_ABC_ATP: proposed F420-0 ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.8   0.6   3.9e-30   2.7e-28      11     228 ..     542     757 ..     531     780 .. 0.86

  Alignments for each domain:
  == domain 1    score: 96.8 bits;  conditional E-value: 3.9e-30
   TIGR03873  11 aggrlivddvdvtaPaGaltgllGPnGsGkstllrllaGllapdaGevdlagadlkalsrrararrvalveqdsdaevplsvrdvvalGr...iPhrslfaadsdedaevvdralarvelssladrdlstlsGGerqrvhlaralaqePklllldePtnhldvsaqlellalvrelaaegvtvvvalhdlnlaasvcdhvvvldgGrvvaaGppaevltpe 228
                 + +  ++d vd+   +G++ +l GP GsGkst++ l+    +p++G++ l+g+ l  + +    r+valv q+       s+ + +  G    +P     aad+++ a+   ra+ +   + + +r l+ lsGG++qr+ +aral  +Pk+lllde t  ld ++   + +++  l+ae++tvvva h l+  ++ +d + v+++G+++  G  +++++++
  MMETSP1137-20121227|9213_1 542 RAESAVLDAVDLLIEPGSVVALCGPSGSGKSTVVGLIEKWYEPQQGTILLDGTPLSLVDASWWRRQVALVAQEPV-LFACSIAENIGYGLaavTPDAVEAAADTANAAAF-IRAFPNGFDTRVGERGLQ-LSGGQKQRIAIARALLIDPKMLLLDEATSALDAESEHVVQEAIDRLMAERTTVVVA-HRLST-VRGADCICVVSKGKIIERGRHEDLIAQD 757
                 556789******************************************************************965.5667888888777522256666666676444444.445555566788888885.9*************************************************999998.99985.7889***************999888766 PP

>> TIGR01277  thiQ: thiamine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.5   0.0   4.9e-30   3.4e-28      17     208 ..     551     745 ..     540     749 .. 0.83

  Alignments for each domain:
  == domain 1    score: 96.5 bits;  conditional E-value: 4.9e-30
   TIGR01277  17 fdlsveaGervailGesGaGkstllnliaGflepasGeikvndk..dhtrsapyerpvsmlfqennlfahltvrqniglGlk...pglklnavqkekvedv..arqvGiadylerlpeelsGGqrqrvalarclvrekpillldepfsaldpklreemlalvkkladekkltlllvthslsdaaaiasqvvvvedGkik 208
                  dl +e G  va+ G+sG+Gkst++ li  + ep +G+i +++   + + ++ ++r v+++ qe  lfa  ++++nig Gl    p    +a +  +  +   a   G +  +     +lsGGq+qr+a+ar l+ +  +lllde  sald    + +   + +l  e+  t ++v+h+ls +++ a+ + vv++Gki 
  MMETSP1137-20121227|9213_1 551 VDLLIEPGSVVALCGPSGSGKSTVVGLIEKWYEPQQGTILLDGTplSLVDASWWRRQVALVAQEPVLFAC-SIAENIGYGLAavtPDAVEAAADTANAAAFirAFPNGFDTRVGERGLQLSGGQKQRIAIARALLIDPKMLLLDEATSALDAESEHVVQEAIDRLMAER--TTVVVAHRLSTVRG-ADCICVVSKGKII 745
                 68999*************************************983356778889**************95.89*******962214433344444444443113345888888888889*********************************99999999999999875..7889*****98765.899********96 PP

>> TIGR03410  urea_trans_UrtE: urea ABC transporter, ATP-binding protein UrtE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.8   0.0   3.8e-30   2.7e-28      11     220 ..     543     754 ..     530     765 .. 0.85

  Alignments for each domain:
  == domain 1    score: 96.8 bits;  conditional E-value: 3.8e-30
   TIGR03410  11 gesevlrdvslevekgevvavlGrngvGkttllkalvgllkvksGeielegeditklkpeervkaGiayvpqGreifpkltveenlelglealkkk......ekkipeeiyelFPvlkeml.kRrgGdLsGGqqqqlaiaRaLvtePklllLDePteGiqPsiikeiekvikelakekdlaillveqvldfaleladrylvlerGevvaegekeeld 220
                  es vl  v+l +e g+vva+ G  g Gk+t++  +   ++ ++G+i l+g+ ++ ++++   ++ +a v q   +f+  +++en+  gl+a++ +      +++  +     FP   + +   rg +LsGGq+q +aiaRaL+ +Pk+llLDe t  +     + ++++i++l +e+  + ++v + l+ ++  ad ++v+++G+++++g++e+l 
  MMETSP1137-20121227|9213_1 543 AESAVLDAVDLLIEPGSVVALCGPSGSGKSTVVGLIEKWYEPQQGTILLDGTPLSLVDASW-WRRQVALVAQEPVLFA-CSIAENIGYGLAAVTPDaveaaaDTANAAAFIRAFPNGFDTRvGERGLQLSGGQKQRIAIARALLIDPKMLLLDEATSALDAESEHVVQEAIDRLMAER--TTVVVAHRLSTVRG-ADCICVVSKGKIIERGRHEDLI 754
                 589***************************************************9988765.6788******887775.79*********98765534444344445567789**9777662678889**********************************************9975..55667788887766.****************999864 PP

>> TIGR03608  L_ocin_972_ABC: putative bacteriocin export ABC transporter, lactococcin 972 group
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.4   0.0   7.7e-29   5.4e-27      10     199 ..     544     732 ..     534     739 .. 0.85

  Alignments for each domain:
  == domain 1    score: 92.4 bits;  conditional E-value: 7.7e-29
   TIGR03608  10 dkeilkklslkiekGelvaivGesGsGKstlLnilgllekkdsgkvilegkekaklkskkaskllreklgylFqnfaLlenetveenlelalklkkkskkekekkkkevlekv.....glekklkkkiyelsgGekqRvalarillkeselilADEPtgsLDkknreevlellkelkeegktiiivtHdpevaek 199
                 + ++l+ ++l ie G++va++G sGsGKst++ ++ +  ++++g+++l+g+    l s    +  r +++ + q+  L    ++ en+  +l+ +     e    + ++   +     g++++  ++  +lsgG+kqR+a+ar+ll +++++l DE t++LD++++++v e ++ l  e +t+ +v H  +  + 
  MMETSP1137-20121227|9213_1 544 ESAVLDAVDLLIEPGSVVALCGPSGSGKSTVVGLIEKWYEPQQGTILLDGTP---L-SLVDASWWRRQVALVAQEPVLF-ACSIAENIGYGLAAVTPDAVEAAADTANAAAFIrafpnGFDTRVGERGLQLSGGQKQRIAIARALLIDPKMLLLDEATSALDAESEHVVQEAIDRLMAERTTV-VVAHRLSTVRG 732
                 5689***********************************************9...3.45566788999*******9888.579**********9999888888777777666622233556777778899********************************************999886665.56677665555 PP

>> TIGR02314  ABC_MetN: D-methionine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.7   0.0   1.1e-27   7.8e-26      18     231 ..     545     756 ..     530     786 .. 0.79

  Alignments for each domain:
  == domain 1    score: 88.7 bits;  conditional E-value: 1.1e-27
   TIGR02314  18 ikaldnvslfvpkgqifgvigasgagkstlircvnllekptsgavivdgkdlttlsnaelvkarrqigmifqhfnllssrtvfgnvalplelentpkekikrkvtellalv.....glsdkkdsypsnlsggqkqrvaiaralasepkvllcdeatsaldpattqsilellkeinrrl.gltillithemdvvkricdevavidkgeliekgtvseifsh 231
                    ld v+l +  g ++ + g sg+gkst++  ++   +p +g++++dg+ l+     +    rrq+ ++ q   l++  ++ +n+   l   +    +     ++  a++     g+  +      +lsggqkqr+aiaral  +pk+ll deatsald  + + + e    i+r + + t ++++h +  v+   d++ v++kg++ie+g   +++++
  MMETSP1137-20121227|9213_1 545 SAVLDAVDLLIEPGSVVALCGPSGSGKSTVVGLIEKWYEPQQGTILLDGTPLS---LVDASWWRRQVALVAQEPVLFA-CSIAENIGYGLAAVTPDAVEAAADTANAAAFIrafpnGFDTRVGERGLQLSGGQKQRIAIARALLIDPKMLLLDEATSALDAESEHVVQEA---IDRLMaERTTVVVAHRLSTVRG-ADCICVVSKGKIIERGRHEDLIAQ 756
                 46799********************************************7765...4556678*********977665.6789**9988765443333333333444444322233677777788899********************************9888777665...555542568899******9965.8***************99999875 PP

>> TIGR01188  drrA: daunorubicin resistance ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.6   0.0   1.1e-26   7.8e-25       8     214 ..     547     756 ..     542     789 .. 0.80

  Alignments for each domain:
  == domain 1    score: 85.6 bits;  conditional E-value: 1.1e-26
   TIGR01188   8 AvdgvnlkveegevfglLGPnGAGKtttikmLttllkPdsGtarvaGyDv.vrepdevRrsigvvpqkasvdedLtarenle..llgelyglpk.keaeeraeellelve..lkeaadkkvktysgGmrrrlelaasliaqPevlfLDEPtiGLDprtrraiwdlieelkkegvtilltthyleeadkladrvaiidkGkiiaedtpeeLKer 214
                  +d v+l +e g+v++l GP G GK+t++ ++    +P++Gt  + G  + + +++  Rr++++v q+  +    +  en+   l +   +  + ++  + a+  +  +   +     ++  ++sgG+++r+ +a++l+ +P++l LDE t+ LD+++ +++ + i+ l  e +t++  +h l  +   ad + +++kGkii  +  e+L ++
  MMETSP1137-20121227|9213_1 547 VLDAVDLLIEPGSVVALCGPSGSGKSTVVGLIEKWYEPQQGTILLDGTPLsLVDASWWRRQVALVAQEPVLFAC-SIAENIGygLAAVTPDAVEaAADTANAAAFIRAFPngFDTRVGERGLQLSGGQKQRIAIARALLIDPKMLLLDEATSALDAESEHVVQEAIDRLMAERTTVV-VAHRLSTVR-GADCICVVSKGKIIERGRHEDLIAQ 756
                 5799*******************************************9974679999***********988765.5556653114444445444044456778888888511444445666699*********************************************99988876.579999885.69*****************999653 PP

>> TIGR02770  nickel_nikD: nickel import ATP-binding protein NikD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.0   0.0   6.3e-26   4.3e-24       3     216 ..     549     756 ..     547     769 .. 0.81

  Alignments for each domain:
  == domain 1    score: 83.0 bits;  conditional E-value: 6.3e-26
   TIGR02770   3 qdvnlslkrgkvlalvGesGsGksltalailglldkeltktsGeilldgkelaal..alrgreialilqnPrsafnPlltikeqlletlkalekls.kqakel.ivealeavgLeeaeevlkkypfelsGGmlqRvmialallleaplliaDePttdlDvvvqaevLklleelrekrglgillithDlgvvaeladevavmekGkivergtvkelfqe 216
                 + v+l +  g v+al G sGsGks+    ++gl++k     +G illdg +l+ +  +   r++al+ q+P+       +i+e++   l a +  + + a ++  ++a+ ++  +  ++ + +   +lsGG  qR+ ia all+++ +l+ De t++lD+ ++  v + +++l+ +r +  ++++h l+ v + ad ++v++kGki+erg  ++l+ +
  MMETSP1137-20121227|9213_1 549 DAVDLLIEPGSVVALCGPSGSGKST----VVGLIEKWYEPQQGTILLDGTPLSLVdaSWWRRQVALVAQEPVLFA---CSIAENIGYGLAAVTPDAvEAAADTaNAAAFIRAFPNGFDTRVGERGLQLSGGQKQRIAIARALLIDPKMLLLDEATSALDAESEHVVQEAIDRLMAERTT--VVVAHRLSTV-RGADCICVVSKGKIIERGRHEDLIAQ 756
                 6799*******************97....578888888899*********99877668999**********8633...46666666666655544423333220333444444444566778889*************************************************99987..569*****98.78******************999875 PP

>> TIGR02211  LolD_lipo_ex: lipoprotein releasing system, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.6   0.0   4.4e-26     3e-24      16     219 ..     543     744 ..     530     746 .. 0.85

  Alignments for each domain:
  == domain 1    score: 83.6 bits;  conditional E-value: 4.4e-26
   TIGR02211  16 leievlkgvsleiekgelvaivGssGsGkstllhllggldkptsGevllkGkelsklssneraklrnkklGfiyqfhhlladftalenvamPlliskkskkeak...erakellekv..glekrinkkpselsGGerqrvaiaralvnkPklvladePtgnldkktakkifelllelnkekntallvvthdlelakkldrvlelkdgkl 219
                  e  vl+ v+l ie g +va+ G sGsGkst++ l+    +p +G++ll+G  ls + +   +    +++ ++ q   +l   ++ en+   l     +  ea+    +a+++++++  g++ r+ ++  +lsGG++qr+aiaral+ +Pk++l de t+ ld+++ + + e + +l  e+ t  +vv+h l+ ++ +d    +++gk+
  MMETSP1137-20121227|9213_1 543 AESAVLDAVDLLIEPGSVVALCGPSGSGKSTVVGLIEKWYEPQQGTILLDGTPLSLVDA---S-WWRRQVALVAQEP-VLFACSIAENIGYGLAAVTPDAVEAAadtANAAAFIRAFpnGFDTRVGERGLQLSGGQKQRIAIARALLIDPKMLLLDEATSALDAESEHVVQEAIDRLMAERTT--VVVAHRLSTVRGADCICVVSKGKI 744
                 5678************************************************9987653...3.4457899999965.66679******99887666555554311135677888875589********************************************************998876..8999*9999999998888888877 PP

>> TIGR01271  CFTR_protein: cystic fibrosis transmembrane conductor regulator (CFTR)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.2   0.7    0.0022      0.15     124     277 ..     254     408 ..     196     419 .. 0.53
   2 !   68.3   0.0   8.2e-22   5.7e-20    1216    1446 ..     528     761 ..     522     774 .. 0.82

  Alignments for each domain:
  == domain 1    score: 7.2 bits;  conditional E-value: 0.0022
   TIGR01271 124 lalglsllfivr..tlllhpaifglhhlgmqlrialfsliykktlklssrvldkistgqlvsllsnnlnkldeglalahfvwi.aplqvvllvgliwelleasafcglgflillalvqallgkkmmkyrdkragkiserlaitseiieniqsvkayc 277
                 + l ls++f+v   + +++  +f l   g ++   l   ++++++      +d+ +tg+l+  l+++   ++ ++++   + +    q ++ + li+ +  + ++  l+++  +a+v  + g+ m k  ++    +++  +++ e +  +++v++++
  MMETSP1137-20121227|9213_1 254 VVLQLSFIFVVGgfFSFVRGYLFTLA--GERVVARLRRRLFRHIIVQEIGFFDQSETGELMNRLASDTTVIQSAVTINVSMGLrFGAQALIGMVLIFFESWKLSLVMLAVVPAIAFVAVAYGRFMKKVSKRYQAALAQASSVAQEALSSVRTVRSFA 408
                 45556666665411233444444443..333333333344444444444555666666666666666666666555554443313455555555555555555556666666666666666666666555555555666666666666666665555 PP

  == domain 2    score: 68.3 bits;  conditional E-value: 8.2e-22
   TIGR01271 1216 gqmtvkdltakyte.agravlqdlsfsveagqrvgllgrtgsgkstllsallrlls.tegeiqidgvswnsvtlqkwrkafgvipqkvfilsgtfrknld.pyeqysdeeiwkvaeevglksvieqfpdkldfvlvdggyvlsnghkqlmclarsilskakillldepsafldpvtlqiirktlkqafsnctvilsehrveallecqqflviegssvkqydsiqkllneasllk 1446
                  g+++ ++++  y + a  avl+ + + +e+g  v l g +gsgkst++  + +  +  +g i +dg     v    wr+   ++ q   +++ ++  n+    +  + + +   a+     + i  fp+ +d  + + g  ls g kq + +ar++l   k+lllde ++ ld  +  +++ ++ + +++ t ++  hr+ ++   + + v+ + ++ +    + l+++  l+k
  MMETSP1137-20121227|9213_1  528 GRIEFRQVSFAYPSrAESAVLDAVDLLIEPGSVVALCGPSGSGKSTVVGLIEKWYEpQQGTILLDGTPLSLVDASWWRRQVALVAQEPVLFACSIAENIGyGLAAVTPDAVEAAADTANAAAFIRAFPNGFDTRVGERGLQLSGGQKQRIAIARALLIDPKMLLLDEATSALDAESEHVVQEAIDRLMAERTTVVVAHRLSTVRGADCICVVSKGKIIERGRHEDLIAQDGLYK 761 
                  666677777777551556899999999999999999999999999999988887652679999999999999999999999999999999999999999724677888888999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999988888777777777666555555555555555 PP

>> TIGR01184  ntrCD: nitrate ABC transporter, ATP-binding proteins C and D
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.2   0.0   4.3e-24     3e-22       1     175 [.     548     727 ..     548     750 .. 0.79

  Alignments for each domain:
  == domain 1    score: 77.2 bits;  conditional E-value: 4.3e-24
   TIGR01184   1 lkdvdleikkgefislighsgcgkstllnliaglekptsgavilegke...itepgpdrmv..vfqnysllpwltvrenialavdavlrdlskserreive.ehiel..vglreaadkrpeqlsggmkqrvaiaralsirpklllldepfgaldaltreelqekllkiveearvtvlmvthdv 175
                 l+ vdl i+ g  ++l g sg gkst++ li    +p +g++ l+g     +++    r v  v q+  +l   ++ eni   + av++d+ ++  ++      i     g+ +    r  qlsgg kqr+aiaral i pk+lllde   alda + + +qe + +++ e+  t+++v+h +
  MMETSP1137-20121227|9213_1 548 LDAVDLLIEPGSVVALCGPSGSGKSTVVGLIEKWYEPQQGTILLDGTPlslVDASWWRRQValVAQEP-VLFACSIAENIGYGLAAVTPDAVEAAADTANAaAFIRAfpNGFDTRVGERGLQLSGGQKQRIAIARALLIDPKMLLLDEATSALDAESEHVVQEAIDRLMAER--TTVVVAHRL 727
                 688*******************************************9822245566667662244554.55567999***99999999888776655443303333312477777888999*********************************************999875..566777766 PP

>> TIGR00955  3a01204: pigment precursor permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.7       1.9   1.3e+02     469     508 ..     352     391 ..     314     398 .. 0.84
   2 !   73.7   0.0   3.8e-23   2.6e-21      36     254 ..     543     753 ..     525     756 .. 0.85

  Alignments for each domain:
  == domain 1    score: -1.3 bits;  conditional E-value: 1.9
   TIGR00955 469 alkfltalllvvlvanvatsfglllscafestslalsvap 508
                 ++  l++l++v ++a va+++g ++  +++  + al+ a 
  MMETSP1137-20121227|9213_1 352 WKLSLVMLAVVPAIAFVAVAYGRFMKKVSKRYQAALAQAS 391
                 5556789999999999999999999999999888887665 PP

  == domain 2    score: 73.7 bits;  conditional E-value: 3.8e-23
   TIGR00955  36 pekellknvsGvaksGellAvlGsSGaGKtTLlnalafrsekglkvsgdvllnGek...veakemraisayvqqddlfiptltvrehLmfsahlrlkrrltkkekrerveevleelgLrkcadtrigvpgrvkglSgGerkRlalaselltdPilLfcDEPTsGLDsfsaasvvkvLkklaqkgktviltiHQPsselfelfdkiillaeGrvvylGspeea 254
                  e+ +l  v   +++G ++A+ G+SG+GK+T +  + +  e +   +g++ll+G++   v+a+  r+  a v q+ +++   ++ e++ +      ++ + +    +   + +++    +  dtr+g  g    lSgG+++R+a+a  ll dP++L++DE Ts LD+ s + v +++ +l  +++tv++  H  s    +  d i+++++G+++ +G+ e++
  MMETSP1137-20121227|9213_1 543 AESAVLDAVDLLIEPGSVVALCGPSGSGKSTVVGLIEKWYEPQ---QGTILLDGTPlslVDASWWRRQVALVAQEPVLFAC-SIAENIGYGLAAVTPDAVEAAADTANAAAFIRAF--PNGFDTRVGERGL--QLSGGQKQRIAIARALLIDPKMLLLDEATSALDAESEHVVQEAIDRLMAERTTVVV-AHRLST--VRGADCICVVSKGKIIERGRHEDL 753
                 5777888888899*********************999887764...467*****98444589999**********999865.6777777766666777799999999999999986..799******7775..9************************************99999*****999998876.587664..5788************99998765 PP

>> TIGR01978  sufC: FeS assembly ATPase SufC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.9   0.0   1.6e-22   1.1e-20      12     230 ..     544     751 ..     539     758 .. 0.80

  Alignments for each domain:
  == domain 1    score: 71.9 bits;  conditional E-value: 1.6e-22
   TIGR01978  12 dkeiLkglnlevkkGevhaimGpnGsGkstLskvlaghekyevtsGeiklkgqdlleleveeraraGlflafqapeeipGvsnkeflrsalnavrkargeeeldllefekllkeklelleldeelleRslneGfsGGekkrneilqlallePklaiLDeiDsGlDvDalkivaegvnklreeekalliithyerllelikPdvvhvlldGrivksGdve 230
                 +  +L+ ++l +++G v+a+ Gp GsGkst++  +  ++ ye ++G+i l+g+ l+ ++     r+ + l  q p+  +  s++e +   l av+    e++ d+++ +  +++  +   +d+++ eR l    sGG k+r  i + +l++Pk+ +LDe+ s lD ++ ++v e +++l  e++ +++++h  rl      d + v+ +G+i++ G  e
  MMETSP1137-20121227|9213_1 544 ESAVLDAVDLLIEPGSVVALCGPSGSGKSTVVGLI--EKWYEPQQGTILLDGTPLSLVDA-SWWRRQVALVAQEPVLFA-CSIAENIGYGLAAVTPDAVEAAADTANAAAFIRAFPN--GFDTRVGERGLQ--LSGGQKQRIAIARALLIDPKMLLLDEATSALDAESEHVVQEAIDRLMAERT-TVVVAH--RLSTVRGADCICVVSKGKIIERGRHE 751
                 6789****************************999..5789999*********9876665.56677899999***9765.5777778888888885444444444433333333322..345556666664..7*********************************************98765.677888..56667789**************9764 PP

>> TIGR01288  nodI: nodulation ABC transporter NodI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.7   0.1   1.6e-22   1.1e-20      15     224 ..     543     755 ..     529     761 .. 0.80

  Alignments for each domain:
  == domain 1    score: 71.7 bits;  conditional E-value: 1.6e-22
   TIGR01288  15 gdkvvvndlsftiaagecfgllgpngagkstiarlvlglispdegkitvlgepvp.ararlarakigvvpqfdnldreftvrenllvfgryfglstreieevi..psllefarl.eskadvrva....dlsggmkrrltlaralindpqllildepttgldpharhliwerlrsllargktilltthlmeeaerlcdrlcvleagrkiaegrpdalid 224
                  +  v++ + + i  g +  l gp g+gkst+  l+     p++g+i + g p     a   r ++ +v+q   l    ++ en+  +g    ++   +e++    +   f r      d+rv     +lsgg k+r+++aral+ dp++l+lde t+ ld  + h++ e +  l+a   t++++ h +  + r  d +cv+ +g+ i  gr + li 
  MMETSP1137-20121227|9213_1 543 AESAVLDAVDLLIEPGSVVALCGPSGSGKSTVVGLIEKWYEPQQGTILLDGTPLSlVDASWWRRQVALVAQEPVL-FACSIAENI-GYGLA-AVTPDAVEAAAdtANAAAFIRAfPNGFDTRVGerglQLSGGQKQRIAIARALLIDPKMLLLDEATSALDAESEHVVQEAIDRLMAERTTVVVA-HRLS-TVRGADCICVVSKGKIIERGRHEDLIA 755
                 45679999999************************************999988752578889*********8877.557888996.56643.4444555555411455667664133456666433338************************************************98887765.5554.56999*****************99996 PP

>> TIGR01194  cyc_pep_trnsptr: cyclic peptide transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.6   3.1   3.1e-22   2.2e-20      29     549 ..     226     746 ..     191     750 .. 0.73

  Alignments for each domain:
  == domain 1    score: 70.6 bits;  conditional E-value: 3.1e-22
   TIGR01194  29 isGlaiilllavin.qalhe..etflrqvllsfvGlsllallsrivadlftayvsqriiarlrkelgekvlsapleeverrrahrlltlltsdidtlsdtllilttllvel.avtlfglaylaylsvvv..flltvvlivlGvaayllarsrGlkftykv.rdeedelnkyttalvsGlkelklnrirrlsfarsaisesavrvadlniieilifilaktvGslllsllv..GllltlaayfavidakaisasvlvllyikGplvqlvsilpilararvaftrlaelserisepepelelseaenvllldhdksvdslelkdvrysykdvessegfalGpidlriasGelvyivGenGcGkstliklllGlyipqeGellldGeavsdesrddyrdlfsavfadyylfddlvqpdek..kqasldqa.ttylsrleledkvkvedlnysttt.....dlstGqrkrlalvnayleerpvllldewaadqdpafkrvfyeellpdlkrrGktilvishddryfeladrlikladGkvvk 549
                 + Gl   ll  vi  +  h+  e++lr+v+l ++ + ++   ++ v     + ++ r++arlr+ l + ++   +   ++  + +l+  l+sd   +++ + i  ++ +   a  l g+  + + s+ +   +l+vv  +  va+ +  +++ +   y++   + + + +   + v  ++ + ++   +     s ++es    ++  ++  l+  +  tvG++ + l++  G  l+++     +  +a+++++l  + i   l  l  ++  + +a  +  r+ +l     + +p+l l+       l+ d   + +e+++v ++y++     +  l  +dl i+ G +v + G  G Gkst++ l+   y pq+G +lldG ++s      +r   + v  +  lf   +  + +    a + +a +   ++ + +  ++    ++ t       +ls Gq++r+a+  a l +  +lllde ++  d     v  e  +  l    +t +v++h     + ad +  +++Gk+++
  MMETSP1137-20121227|9213_1 226 MPGLVGELLGGVIGgDGAHDdrEEGLRRVVLQLSFIFVVGGFFSFVRGYLFTLAGERVVARLRRRLFRHIIVQEIGFFDQSETGELMNRLASDTTVIQSAVTINVSMGLRFgAQALIGMVLIFFESWKLslVMLAVVPAIAFVAVAYGRFMKKVSKRYQAaLAQASSVAQEALSSVRTVRSFAMEVR-EAKRYVSSVDESYGIGRQKALAYGLFGSIIGTVGQFAIILVLwyGGGLVIRGE---MTLAALTSFLLYTIMIAACLGGLSDLFSSMMNALGSSVRVFQL----LDRRPRLALTGG-----LKLDDVRGRIEFRQVSFAYPSRAE--SAVLDAVDLLIEPGSVVALCGPSGSGKSTVVGLIEKWYEPQQGTILLDGTPLSLVDASWWRRQVALVAQEPVLFACSIAENIGygLAAVTPDAvEAAADTANAAAFIRAFPNGFDTRVgerglQLSGGQKQRIAIARALLIDPKMLLLDEATSALDAESEHVVQEA-IDRL-MAERTTVVVAHRLSTVRGADCICVVSKGKIIE 746
                 23444455555664245564338899********************999999*******************************************99888777777666542667888888888888761145566667778888888777776555554045555555555555666777766654.4444457788887777777777777778999****988777644666666654...4567899999998888888888888877777887788888555....556888888765.....36677889***********98655..56799************************************************999999999888888888888766654432112333333313334455555555555555554322222259*******************************9999987655.5455.456788999********************986 PP

>> TIGR02324  CP_lyasePhnL: phosphonate C-P lyase system protein PhnL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.7   0.1   7.3e-22   5.1e-20      21     214 ..     545     733 ..     534     741 .. 0.84

  Alignments for each domain:
  == domain 1    score: 69.7 bits;  conditional E-value: 7.3e-22
   TIGR02324  21 lpvlkevsleveaGelvalsGksGaGkstllkslyanYlpesgrilvrhegeivdlvkas..erevlevRrktigyvsqfLrviPRvsalevvaepllelGvereearakakellarln..iperLWslaPatfsGGekqRvniaraliadrPiLLLdePtasLdaanrkvvvelikeakargaaligifhdeevrel 214
                   vl+ v+l +e G +val G+sG+Gkst++  + + Y p++g+il+      + lv as   r+v  v ++ + +       i     l  v+  ++e  +++++a+a  +++ + ++  + er         sGG kqR+ iaral+ d  +LLLde t++Lda   +vv e i+++ a++++++      +vr +
  MMETSP1137-20121227|9213_1 545 SAVLDAVDLLIEPGSVVALCGPSGSGKSTVVGLIEKWYEPQQGTILLDG--TPLSLVDASwwRRQVALVAQEPVLFACSIAENIGY--GLAAVTPDAVEAAADTANAAAFIRAFPNGFDtrVGERGL-----QLSGGQKQRIAIARALLIDPKMLLLDEATSALDAESEHVVQEAIDRLMAERTTVVVAHRLSTVRGA 733
                 57999***************************************99865..66667777633688999999999999998888864..566788888888888888888888888877611555544.....467***************999********************************9987777777765 PP

>> TIGR03411  urea_trans_UrtD: urea ABC transporter, ATP-binding protein UrtD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.9   0.0   3.2e-21   2.3e-19      17     229 ..     547     753 ..     533     762 .. 0.85

  Alignments for each domain:
  == domain 1    score: 67.9 bits;  conditional E-value: 3.2e-21
   TIGR03411  17 alndlslsveegelrviiGpnGaGkttllDvitGktrpdeGsvlfkgkdltklkeaeiarlGigRkfqkpsvfeeltvlenlelalkadksvlallfarlskeekerieevleligLeekadkkaglLshGqkqwLeigmllvqepkllllDePvaGmtdeetektaellkelakersvvvvehDmefvrelaekvtvlheGkvlaeGsldev 229
                  l+ ++l +e+g++ ++ Gp G+Gk+t++ +i    +p++G++l++g+ l+ ++ a+  r  ++   q+p +f   +++en+   l+a     +++ a +++++++   ++    g ++++ ++  +Ls Gqkq++ i+  l+ +pk+lllDe ++ + +e ++ + e + +l  er+ vvv h ++ vr   + + v+++Gk++  G  +++
  MMETSP1137-20121227|9213_1 547 VLDAVDLLIEPGSVVALCGPSGSGKSTVVGLIEKWYEPQQGTILLDGTPLSLVD-ASWWRRQVALVAQEPVLFA-CSIAENIGYGLAAVTP--DAVEAAADTANAAAFIRA-FPNGFDTRVGERGLQLSGGQKQRIAIARALLIDPKMLLLDEATSALDAESEHVVQEAIDRLMAERTTVVVAHRLSTVRGA-DCICVVSKGKIIERGRHEDL 753
                 47899*******************************************997665.56778899*******9985.799***9876655432..333333333333333333.2458899999*******************************************************************985.5699***********98775 PP

>> TIGR02633  xylG: D-xylose ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.0   0.0   1.7e-21   1.2e-19      15     244 ..     546     770 ..     540     781 .. 0.84

  Alignments for each domain:
  == domain 1    score: 68.0 bits;  conditional E-value: 1.7e-21
   TIGR02633  15 kaldnidlklraGeivslcGenGaGkstlmkvlsgvyphGtydGeilfegeelkassirdterkGiviihqeltlvkelsvleniflGneitlkGglmdydamvlrakellrelkld.asnvtrpvsdlGlGqqqlveiakalnkqvrllildepsaslteketeilldiirdlkakgvacvyishkleevkavsdtisvirdGqhvatkdaea.lseddiitmmvGrelts 244
                   ld++dl +++G +v+lcG  G+Gkst++ ++   y     +G il +g++l   + +   r+ ++++ qe +l    s++eni  G     +   ++ +a +  a +++r      ++ v     +l +Gq+q + ia+al    ++l+lde +++l ++  +++ + i  l a+    v ++h+l  v+  +d i+v+  G+ +     e  +++d +  ++v r+++ 
  MMETSP1137-20121227|9213_1 546 AVLDAVDLLIEPGSVVALCGPSGSGKSTVVGLIEKWYEP--QQGTILLDGTPLSLVDASW-WRRQVALVAQEPVLF-ACSIAENIGYGLAAVTPD-AVEAAADTANAAAFIRAFPNGfDTRVGERGLQLSGGQKQRIAIARALLIDPKMLLLDEATSALDAESEHVVQEAIDRLMAERT-TVVVAHRLSTVRG-ADCICVVSKGKIIERGRHEDlIAQDGLYKKLVQRQMAG 770
                 5699*****************************999864..68**********9888664.57789******9987.58*********9888887.68888999999999998754312233333667889*****************************9999999999999988775.5779*******98.7***********98766555156777888889888875 PP

>> TIGR03740  galliderm_ABC: lantibiotic protection ABC transporter, ATP-binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.9   0.0   1.2e-20   8.6e-19      12     211 ..     544     753 ..     531     765 .. 0.76

  Alignments for each domain:
  == domain 1    score: 65.9 bits;  conditional E-value: 1.2e-20
   TIGR03740  12 kqavvnnvslkvkknsvygllGpnGaGkstllklltGllrktsGeilldgrewtrkdl....kkiGsliesPalyenltarenl.....kvrtll..lglpesrieevlkiv..dlentekkkakqfslGmkqrlGiaiallnkPkllildePtnGldPlGiqelreliksfpekGitvilsshilsevelladhiGiiseGklkyekkidkd 211
                 + av++ v+l ++  sv +l Gp G+Gkst++ l+    ++++G illdg +++  d     +++  + ++P l+   +  en+      v+      + ++++    ++    ++++    +  q+s G kqr+ ia all +Pk+l+lde t  ld    + ++e i  +  + +tv++ +h ls v+  ad i ++s+Gk+  +++ ++ 
  MMETSP1137-20121227|9213_1 544 ESAVLDAVDLLIEPGSVVALCGPSGSGKSTVVGLIEKWYEPQQGTILLDGTPLSLVDAswwrRQVALVAQEPVLFA-CSIAENIgyglaAVTPDAveAAADTANAAAFIRAFpnGFDTRVGERGLQLSGGQKQRIAIARALLIDPKMLLLDEATSALDAESEHVVQEAIDRLMAERTTVVV-AHRLSTVRG-ADCICVVSKGKIIERGRHEDL 753
                 56799***********************************************998885233246666666666665.56667762221122222200223333333444433213444455677799************************************************999987.699***985.9***********988887665 PP

>> TIGR01189  ccmA: heme ABC exporter, ATP-binding protein CcmA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.1   0.0     1e-20   7.2e-19       9     184 ..     541     725 ..     534     732 .. 0.80

  Alignments for each domain:
  == domain 1    score: 66.1 bits;  conditional E-value: 1e-20
   TIGR01189   9 eRgervlleglsfelaaGealvveGpnGiGKttLLRilaGLlkpesGevelndkelaeqrdelaeellylgHldglKaeLsalEnLkfyaallq.seqk.tveealekvgL....sgledlpva...qLsAGqkrRlalarLllskaplWiLDEPttalDkegvellaellaaHlargGivllat 184
                 +R e ++l ++++ + +G ++++ Gp G+GK+t++ ++    +p++G++ l++++l+ +  ++ ++   l  ++ +  + s++En+ +  a ++ ++ + ++++a +++ +    +g++ ++ +   qLs Gqk+R+a+ar ll   ++ +LDE t alD+e+ ++++e+++  +a+  +v++a 
  MMETSP1137-20121227|9213_1 541 SRAESAVLDAVDLLIEPGSVVALCGPSGSGKSTVVGLIEKWYEPQQGTILLDGTPLSLVDASWWRRQVALVAQEPVLFACSIAENIGYGLAAVTpDAVEaAADTANAAAFIrafpNGFDTRVGErglQLSGGQKQRIAIARALLIDPKMLLLDEATSALDAESEHVVQEAIDRLMAERTTVVVAH 725
                 7999****************************************************999888766666666667777899********7666652222223333333333311113333333223339********************************************9999998888874 PP

>> TIGR03522  GldA_ABC_ATP: gliding motility-associated ABC transporter ATP-binding subunit GldA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.3   0.0     4e-20   2.8e-18      14     224 ..     544     758 ..     530     773 .. 0.85

  Alignments for each domain:
  == domain 1    score: 64.3 bits;  conditional E-value: 4e-20
   TIGR03522  14 kqkaldevsfeaekGeivGflGPnGaGkstlmkiltgylkadsGsvavagedv.lknslevrkniGylPehnPlyldlyvreylefs.aal..yklkgrklkkrveelielv..GlkaeqhkkigalskGyrqrvGlakallhdPkvlildePttGldPnqlveirevikeiakdktvilsthimqevealcdrviiinkGkivadkkleelkaaek 224
                 +  +ld v + +e+G++v + GP G+Gkst++ ++  + +++ G++ ++g+   l ++   r+++  +   +P+     + e + +  aa+    ++  +   + +++i+    G+ +    +  +ls G +qr+ +a+all dPk+l+lde t+ ld +    ++e i ++  ++t ++ +h +  v+   d + ++ kGki+   + e+l a++ 
  MMETSP1137-20121227|9213_1 544 ESAVLDAVDLLIEPGSVVALCGPSGSGKSTVVGLIEKWYEPQQGTILLDGTPLsLVDASWWRRQVALV-AQEPVLFACSIAENIGYGlAAVtpDAVEAAADTANAAAFIRAFpnGFDTRVGERGLQLSGGQKQRIAIARALLIDPKMLLLDEATSALDAESEHVVQEAIDRLMAERTTVVVAHRLSTVRG-ADCICVVSKGKIIERGRHEDLIAQDG 758
                 56799*********************************************975267777788888755.66788888999999887524442246888888889999998743388888889999***************************************************************97.5789999******9999999977765 PP

>> TIGR03771  anch_rpt_ABC: anchored repeat-type ABC transporter, ATP-binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.4   0.5   1.2e-18   8.6e-17       3     200 ..     555     754 ..     553     764 .. 0.78

  Alignments for each domain:
  == domain 1    score: 59.4 bits;  conditional E-value: 1.2e-18
   TIGR03771   3 vdkGellgllGpnGaGkttllrailglikvakGsvkvagks.....srkgrreiGyvpqrhefawdfpidveqtvlsGragliGllrr..pkkadfaavadalervklteladrpvGelsGGqrqrvlvaralavkpslllldepftGldlpsqellvelfeelagegtailmtthdlaeavatcdrvvll.ngrvvadgapdqlq 200
                 +++G +++l Gp G+Gk+t++  i    ++++G++ ++g +     ++  rr++  v q       f  ++++ +  G a          +  a+ aa   a+ +   t++ +r + +lsGGq+qr+ +aral ++p++lllde  + ld  s+  + e +  l +e t+++ ++h l+ +v  +d ++++  g+++  g  ++l 
  MMETSP1137-20121227|9213_1 555 IEPGSVVALCGPSGSGKSTVVGLIEKWYEPQQGTILLDGTPlslvdASWWRRQVALVAQEPV---LFACSIAENIGYGLAAVTPDAVEaaADTANAAAFIRAFPNGFDTRVGERGL-QLSGGQKQRIAIARALLIDPKMLLLDEATSALDAESEHVVQEAIDRLMAERTTVV-VAHRLS-TVRGADCICVVsKGKIIERGRHEDLI 754
                 689************************************87322212334578999988754...478888888888887765443330033445555566666666677777776.8**********************************************99888776.679997.57788888776268999999888875 PP

>> TIGR03719  ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.0     1e-06   7.1e-05     323     391 ..     530     600 ..     512     609 .. 0.82
   2 !   36.5   0.0   6.6e-12   4.6e-10     161     216 ..     668     725 ..     637     759 .. 0.85

  Alignments for each domain:
  == domain 1    score: 19.4 bits;  conditional E-value: 1e-06
   TIGR03719 323 ievenlskafgdk...lliddlsfklpkggivGviGpnGaGkstlfklitgkekpdsGelkiGetvklayvd 391
                 ie++++s a+ ++    ++d +++ + +g++v + Gp G+Gkst++ li +  +p++G++ +  t  l+ vd
  MMETSP1137-20121227|9213_1 530 IEFRQVSFAYPSRaesAVLDAVDLLIEPGSVVALCGPSGSGKSTVVGLIEKWYEPQQGTILLDGT-PLSLVD 600
                 6777777777655222699****************************************987544.455555 PP

  == domain 2    score: 36.5 bits;  conditional E-value: 6.6e-12
   TIGR03719 161 klsGGekrrvalcrlllekPdlllldePtnhldaesvaWlekflkey..kGtvvavth 216
                 +lsGG+k+r+a++r ll +P +lllde t  ldaes + +++ + +   + t v+v+h
  MMETSP1137-20121227|9213_1 668 QLSGGQKQRIAIARALLIDPKMLLLDEATSALDAESEHVVQEAIDRLmaERTTVVVAH 725
                 79**********************************9999998887622346677777 PP

>> TIGR03415  ABC_choXWV_ATP: choline ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.0   0.0   8.2e-17   5.7e-15      42     255 ..     550     756 ..     544     766 .. 0.83

  Alignments for each domain:
  == domain 1    score: 53.0 bits;  conditional E-value: 8.2e-17
   TIGR03415  42 dasldveeGeilvlmGlsGsGkssllravnglnpvsrGkvlvkdedkevdvakcdeatlrklrtkrvsmvfqkfallPWrtveenvafGlelsGvakaer.rkrveeqlelvglaeWadkkvge....lsGGmqqrvGlarafateadillmdePfsaldPliraklqdellelqkklkktivfvshdldealklGnriaimegGrivqlgtpeeivlk 255
                  + l +e G ++ l G sGsGks+++  + +     +G +l+      + +  +d++  r    ++v++v q+  l+   +++en+++Gl        e   + +++   +  + +  d++vge    lsGG +qr+ +ara+ ++ ++ll+de  sald    + +q+ + +l +  ++t v v+h l   ++  + i+++ +G+i+  g  e+++++
  MMETSP1137-20121227|9213_1 550 AVDLLIEPGSVVALCGPSGSGKSTVVGLIEKWYEPQQGTILLDGT--PLSL--VDASWWR----RQVALVAQEPVLFA-CSIAENIGYGLAAVTPDAVEAaADTANAAAFIRAFPNGFDTRVGErglqLSGGQKQRIAIARALLIDPKMLLLDEATSALDAESEHVVQEAIDRLMA--ERTTVVVAHRLS-TVRGADCICVVSKGKIIERGRHEDLIAQ 756
                 57899*********************************9988543..4444..4554444....58******988776.79*********876655545404455555555566777777777666669**********************************9999999888876..69999******7.6899999****************99976 PP

>> TIGR03269  met_CoM_red_A2: methyl coenzyme M reductase system, component A2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.3   0.0   4.1e-16   2.9e-14     299     518 ..     547     756 ..     530     762 .. 0.83

  Alignments for each domain:
  == domain 1    score: 50.3 bits;  conditional E-value: 4.1e-16
   TIGR03269 299 avdnvslevkekeifGlvGtsGaGkttlskilaGvleptsGevevrvGdewvdmtkkgvlerGrakkyiGllhqeyalyphrtvlenlteaiglelpd..elakrkavivlkavGfdeekakeildklpdelseGerhrvalaqvlikeprivildeptGtmdpitkvkvaesilkareeleetfvivshdmdfvlevcdraalmrdGkivkiGdpeeivee 518
                  +d+v+l ++ + +  l G sG+Gk+t+  ++    ep +G +        +d t   +++    ++ + l+ qe  l++  ++ en+   ++   pd  e a   a  +  +  f +   + + ++   +ls G++ r+a+a+ l+ +p++++lde t ++d  +++ v+e+i   r   e+t v+v+h +  v+   d ++++ +Gki++ G+ e+++++
  MMETSP1137-20121227|9213_1 547 VLDAVDLLIEPGSVVALCGPSGSGKSTVVGLIEKWYEPQQGTIL-------LDGTPLSLVDASWWRRQVALVAQEPVLFAC-SIAENIGYGLAAVTPDavEAAADTANAAAFIRAFPNGFDTRVGER-GLQLSGGQKQRIAIARALLIDPKMLLLDEATSALDAESEHVVQEAID--RLMAERTTVVVAHRLSTVRG-ADCICVVSKGKIIERGRHEDLIAQ 756
                 469999**********************************9986.......5788888888889999************85.799***999988888722333444444444444555444555444.458******************************************96..566789***********997.699***************999875 PP

>> TIGR02323  CP_lyasePhnK: phosphonate C-P lyase system protein PhnK
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.0   0.1   3.3e-15   2.3e-13      21     222 ..     551     750 ..     531     766 .. 0.75

  Alignments for each domain:
  == domain 1    score: 48.0 bits;  conditional E-value: 3.3e-15
   TIGR02323  21 vsf.lypGevlgivGesGsGkstllkalaarlladaGevtyesrsrelellalseaerrlllrtewGlvhqnprGlrmevsaGanigerllavgarhyGk...iraaakwlekve..idaari..kpaafsGGmqqrlqiarnlvtrprlvfm.eptGGlvsvqarll..llrglvrelglaviivth.lavarllaqrllvmkqGrvvesGlt 222
                 v++ + pG v+++ G sGsGkst++  + +   +++G++  +     l l+  s        r +  lv q+p       s   nig  l av           ++aa +++      d+ r+  +  ++sGG +qr+ iar+l+  p+++++ e t  l +    ++   + +l+   + ++++v+h l+ +r  a+ + v+ +G+++e G  
  MMETSP1137-20121227|9213_1 551 VDLlIEPGSVVALCGPSGSGKSTVVGLIEKWYEPQQGTILLDGTP--LSLVDASWW------RRQVALVAQEPVL--FACSIAENIGYGLAAVTPDAVEAaadTANAAAFIRAFPngFDT-RVgeRGLQLSGGQKQRIAIARALLIDPKMLLLdEATSALDAESEHVVqeAIDRLMA--ERTTVVVAHrLSTVRG-ADCICVVSKGKIIERGRH 750
                 555589*********************************988655..444444433......445789****975..5678889****99999765554400045555688776411454.88777889**********************99899999955555554345666666..4567888998999996.78999**********976 PP

>> TIGR01257  rim_protein: rim ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.9   0.0   2.5e-14   1.7e-12     947    1179 ..     549     784 ..     538     791 .. 0.83

  Alignments for each domain:
  == domain 1    score: 42.9 bits;  conditional E-value: 2.5e-14
   TIGR01257  947 drlnitfyenqitaflghngagktttlsiltgllpptsgtvlvggkdiet.nldavrqslgmcpqhnilfhhltvaehilf.yaqlkgrsweeaqleme..amle..dtglhhkrneeaqdlsgglqrklsvaiafvgdakvvvldeptsgvdpysrrsiwdlllkyrsgrtiimsthhmdeadllgdriaiisqgrlycsgtplflkncfgtglyltlv.rkmkniqsqrkgsegtcsc 1179
                  d +++ +    + a+ g  g+gk+t + ++     p  gt+l+ g  +   +    r+ + ++ q  +lf   ++ae i +  a +   + e a    +  a++     g+  +  e   +lsgg ++++++a a++ d k+++lde ts +d  s + + + + +  + rt ++ +h +       d i+++s+g++   g    l      gly  lv r+m   +s+   s ++cs 
  MMETSP1137-20121227|9213_1  549 DAVDLLIEPGSVVALCGPSGSGKSTVVGLIEKWYEPQQGTILLDGTPLSLvDASWWRRQVALVAQEPVLFA-CSIAENIGYgLAAVTPDAVEAAADTANaaAFIRafPNGFDTRVGERGLQLSGGQKQRIAIARALLIDPKMLLLDEATSALDAESEHVVQEAIDRLMAERTTVVVAHRLSTVR-GADCICVVSKGKIIERGRHEDL--IAQDGLYKKLVqRQMAGKHSRSTDSIAACSD 784 
                  55566666678999*******************************9997414556799***********97.6899999873577777777766544431145542257999999****************************************************************98654.579************9987666..45689**999945688888888888888875 PP

>> TIGR00954  3a01203: peroxysomal long chain fatty acyl transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.4   0.0   0.00047     0.033     444     498 ..     521     577 ..     503     592 .. 0.85
   2 !   28.0   0.0   2.2e-09   1.5e-07     584     639 ..     669     726 ..     661     731 .. 0.82

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 0.00047
   TIGR00954 444 gkveaqdngikfeniplvtP..egdvlieeLsfevksGnhlLiiGPnGcGKsslfRi 498
                  k+ +   +i f ++  + P  + + +++ + + ++ G+ + ++GP G GKs +  +
  MMETSP1137-20121227|9213_1 521 LKLDDVRGRIEFRQVSFAYPsrAESAVLDAVDLLIEPGSVVALCGPSGSGKSTVVGL 577
                 456677789***********77788999************************98755 PP

  == domain 2    score: 28.0 bits;  conditional E-value: 2.2e-09
   TIGR00954 584 LsgGekqRiamARlfyHkPkfavLDEctsAvsvdvEdklyelakevgi..tllsvshr 639
                 LsgG+kqRia+AR +   Pk  +LDE+tsA+  + E  + e++ ++    t + v+hr
  MMETSP1137-20121227|9213_1 669 LSGGQKQRIAIARALLIDPKMLLLDEATSALDAESEHVVQEAIDRLMAerTTVVVAHR 726
                 9*********************************999988887765331144555565 PP

>> TIGR00956  3a01205: pleiotropic drug resistance family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.4   0.0   4.8e-13   3.3e-11     761     956 ..     531     722 ..     519     746 .. 0.82

  Alignments for each domain:
  == domain 1    score: 39.4 bits;  conditional E-value: 4.8e-13
   TIGR00956 761 ewrdltyevkikkekrvlLdevdGwvkPGkltALmGasGAGkttLlnvLaeRvttGvitegdrlvngrkl...dssF.qRsiGYvqqqDlHletstvreaLrfsAylRqpkevskkekneyveevikllelesyadAvvGvpGeGLnveqRkrltigveLvAkPklllFlDePtsGLDsqtawsivkllrkladaGqail 956
                 e+r++++  + ++e+  +Ld vd  ++PG++ AL G sG Gk t++  + +  +    ++g++l +g++l   d+s+ +R++  v q+ +      + e + +  +   p+ v  +  +    + i+   + +  d  vG+ G  L+  q++r++i+  L   Pk +l lDe ts LD+ +  ++ + + +l  +  +++
  MMETSP1137-20121227|9213_1 531 EFRQVSFAYPSRAES-AVLDAVDLLIEPGSVVALCGPSGSGKSTVVGLIEKWYEP---QQGTILLDGTPLslvDASWwRRQVALVAQEPVLF-ACSIAENIGYGLAAVTPDAVEAAADTANAAAFIRA--FPNGFDTRVGERGLQLSGGQKQRIAIARALLIDPK-MLLLDEATSALDAESEHVVQEAIDRLMAERTTVV 722
                 567788887777665.689*************************99877665443...3455666666543337775267788999988865.67799****************99999888888885..67889*****************************6.5679************999999988876655554 PP

>> TIGR00630  uvra: excinuclease ABC subunit A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.7   0.0    0.0052      0.36     618     650 ..     543     575 ..     532     583 .. 0.84
   2 !   20.4   0.0   3.8e-07   2.6e-05     821     901 ..     661     737 ..     657     750 .. 0.90

  Alignments for each domain:
  == domain 1    score: 6.7 bits;  conditional E-value: 0.0052
   TIGR00630 618 akennlkdidvsiplglltvitGvsgsGkstLi 650
                 a++  l  +d+ i  g ++++ G+sgsGkst++
  MMETSP1137-20121227|9213_1 543 AESAVLDAVDLLIEPGSVVALCGPSGSGKSTVV 575
                 566678889999999999999999999999987 PP

  == domain 2    score: 20.4 bits;  conditional E-value: 3.8e-07
   TIGR00630 821 klGqpattLsGGeaqrvkLakeLskrstgktlyilDePttGLhfdDikkLlevlqrlvdkGntvvviehnldviksaDyii 901
                 ++G+    LsGG  qr+ +a+ L        + +lDe t  L  +  + + e ++rl+++  tv v+ h l  ++ aD+i 
  MMETSP1137-20121227|9213_1 661 RVGERGLQLSGGQKQRIAIARALLI---DPKMLLLDEATSALDAESEHVVQEAIDRLMAERTTV-VVAHRLSTVRGADCIC 737
                 7899999***************986...56689*************99999*******987665.678**********995 PP

>> TIGR00455  apsK: adenylylsulfate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0    0.0011     0.073      18      54 ..     558     593 ..     549     597 .. 0.81

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 0.0011
   TIGR00455  18 svvlWltGlsgsGkstianalekkLeekglrvevLDG 54 
                 ++v+ l G+sgsGkst+   +ek  +e    +++LDG
  MMETSP1137-20121227|9213_1 558 GSVVALCGPSGSGKSTVVGLIEKW-YEPQQGTILLDG 593
                 78999************9887765.555566788888 PP

>> TIGR00602  rad24: checkpoint protein rad24
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.0   0.00072      0.05     100     134 ..     548     582 ..     544     588 .. 0.81

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 0.00072
   TIGR00602 100 lkaqvLeskkkriLLitGPsGCgKsTvikiLsKel 134
                 l+a  L  ++  +  ++GPsG gKsTv+  + K +
  MMETSP1137-20121227|9213_1 548 LDAVDLLIEPGSVVALCGPSGSGKSTVVGLIEKWY 582
                 666666677888999*************9888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (792 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       375  (0.0914188); expected 82.0 (0.02)
Passed bias filter:                      189  (0.0460751); expected 82.0 (0.02)
Passed Vit filter:                        86  (0.0209654); expected 4.1 (0.001)
Passed Fwd filter:                        59  (0.0143832); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              59  [number of targets reported over threshold]
# CPU time: 1.80u 0.21s 00:00:02.01 Elapsed: 00:00:01.70
# Mc/sec: 614.91
//
Query:       MMETSP1137-20121227|9215_1  [L=312]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.9e-09   32.6   5.3     0.0076   12.1   0.1    5.2  5  TIGR00870 trp: transient-receptor-potential calcium channel protein


Domain annotation for each model (and alignments):
>> TIGR00870  trp: transient-receptor-potential calcium channel protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.1   0.0   0.00025         1     119     156 ..      41      78 ..      22      86 .. 0.86
   2 !   12.1   0.1   1.9e-06    0.0076     132     160 ..      87     115 ..      80     154 .. 0.85
   3 !    5.6   0.1   0.00018      0.75     120     158 ..     142     180 ..     123     184 .. 0.80
   4 !    4.9   0.0   0.00028       1.1     130     163 ..     185     227 ..     180     233 .. 0.82
   5 !    3.5   0.0   0.00077       3.2     130     155 ..     251     276 ..     241     277 .. 0.93

  Alignments for each domain:
  == domain 1    score: 5.1 bits;  conditional E-value: 0.00025
   TIGR00870 119 landestseftkgitalilAihkqnyeivklLlekgas 156
                 +an+    ++++g t+l+l   ++   + k+Ll  gas
  MMETSP1137-20121227|9215_1  41 HANAFLEIKEQNGRTPLMLTCKNNVTGCMKILLRGGAS 78 
                 56677777899***********************9996 PP

  == domain 2    score: 12.1 bits;  conditional E-value: 1.9e-06
   TIGR00870 132 italilAihkqnyeivklLlekgasvear 160
                  +al++A++k+ +e++++Ll+ +a+ e+r
  MMETSP1137-20121227|9215_1  87 MSALHVAVEKRHIECLQMLLHHRANTEIR 115
                 59**********************99854 PP

  == domain 3    score: 5.6 bits;  conditional E-value: 0.00018
   TIGR00870 120 andestseftkgitalilAihkqnyeivklLlekgasve 158
                 a d +++      t+li+A+   n  ++++Ll  g++v 
  MMETSP1137-20121227|9215_1 142 AADIEFTHKRGWSTPLIVAAKSANAATLQALLSAGVEVD 180
                 5555555555557***********************996 PP

  == domain 4    score: 4.9 bits;  conditional E-value: 0.00028
   TIGR00870 130 kgitalilAihkqnyeivklLlekgasve.........arakg 163
                  g tal+ A       + klLle+ga+v+         + a +
  MMETSP1137-20121227|9215_1 185 YGTTALHTACSYGADLCAKLLLESGARVNlcsedglspLHASC 227
                 699*************************966666655555555 PP

  == domain 5    score: 3.5 bits;  conditional E-value: 0.00077
   TIGR00870 130 kgitalilAihkqnyeivklLlekga 155
                 kg+++++lA++     +v++Lle g+
  MMETSP1137-20121227|9215_1 251 KGHSPMVLAVMFGHAACVEALLEAGV 276
                 89*********************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (312 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       103  (0.0251097); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.31u 0.15s 00:00:00.46 Elapsed: 00:00:00.68
# Mc/sec: 605.60
//
Query:       MMETSP1137-20121227|9216_1  [L=338]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0022   15.0   0.5     0.0034   14.4   0.4    1.2  1  TIGR03885 flavin_revert: probable non-F420 flavinoid oxidoreductase
  ------ inclusion threshold ------
      0.054   11.6   6.5      0.055   11.5   0.2    2.5  2  TIGR03816 tadE_like_DECH: helicase/secretion neighborhood TadE-like protein


Domain annotation for each model (and alignments):
>> TIGR03885  flavin_revert: probable non-F420 flavinoid oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.4   1.7e-06    0.0034     126     294 ..       5     168 ..       3     173 .. 0.83

  Alignments for each domain:
  == domain 1    score: 14.4 bits;  conditional E-value: 1.7e-06
   TIGR03885 126 aaeviraLlaGetvtrkglvtveearlyslpetppallgaalteetarwlgeWaDGLitvs...kskeklkeiveafregGGagkplvlqvklsyaktkeealaaafeqWrsnvlapevledlrrpeefdaaarsvkeedveeavrisadldqlaellqeladlGfdelylh 294
                 + +  +a +aG  v +k+l++  +a + +  +++++l   a +++ a++lg+Wa  L+t +    ++++ +++ve +++gG    +++l+ +l   ++ +e  +aaf + r     ++v   l + +  d  + + + e  ++ v+++ d ++ + +l+ ++  Gf+++ l 
  MMETSP1137-20121227|9216_1   5 CSKCTQAYVAGIGVYEKQLLAALDAAMEAEKRKRASLEKEAAAAADAQALGKWA-TLVTSNlyrIPSDATTAVVEDWERGG---ETVILNFDLKNFSSPKEQAEAAFTRARRLRRGSAVVRALIEKS--D--SVFSQLEAWRADVELARDEGDELRALHGKILKGFKKMKLK 168
                 5666677888999999999**********************************9.5999763336899999******9976...5799999999888888888999999999888888888876543..3..3445567888999999999999999999999999999876 PP

>> TIGR03816  tadE_like_DECH: helicase/secretion neighborhood TadE-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   1.0     0.019        40      42      76 ..      24      63 ..       8      88 .. 0.60
   2 ?   11.5   0.2   2.7e-05     0.055      26      86 ..     252     312 ..     236     331 .. 0.77

  Alignments for each domain:
  == domain 1    score: 2.3 bits;  conditional E-value: 0.019
   TIGR03816 42 laALaAAdalaag.....eeaaCaaAeevakangarlvsC 76
                laAL+AA ++++      e++a aaA++ a  + a+lv+ 
  MMETSP1137-20121227|9216_1 24 LAALDAAMEAEKRkraslEKEAAAAADAQALGKWATLVTS 63
                4555555544433233455555555555555555555555 PP

  == domain 2    score: 11.5 bits;  conditional E-value: 2.7e-05
   TIGR03816  26 vgqavvarhraasaADlaALaAAdalaageeaaCaaAeevakangarlvsCevegedvtvt 86 
                 v +++++++ ++ aADlaA+    + +   ++   +A++v+k  ga l + ++++e+ t++
  MMETSP1137-20121227|9216_1 252 VKAVAASEKDMQMAADLAAFYSELKTNGKVRVSFTSAKHVSKPSGAPLGAVTMRKEEGTIV 312
                 4556677889***********99988777999****************9999998666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (338 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       168  (0.0409556); expected 82.0 (0.02)
Passed bias filter:                      127  (0.0309605); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.30u 0.15s 00:00:00.44 Elapsed: 00:00:02.00
# Mc/sec: 223.06
//
Query:       MMETSP1137-20121227|9217_1  [L=229]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (229 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        31  (0.00755729); expected 82.0 (0.02)
Passed bias filter:                       30  (0.00731351); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.12s 00:00:00.31 Elapsed: 00:00:00.30
# Mc/sec: 1007.52
//
Query:       MMETSP1137-20121227|9218_1  [L=37]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (37 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        23  (0.00560702); expected 82.0 (0.02)
Passed bias filter:                       23  (0.00560702); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.15s 00:00:00.25 Elapsed: 00:00:00.70
# Mc/sec: 69.77
//
Query:       MMETSP1137-20121227|9219_1  [L=293]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (293 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        76  (0.0185275); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.16s 00:00:00.40 Elapsed: 00:00:00.35
# Mc/sec: 1104.94
//
Query:       MMETSP1137-20121227|9220_1  [L=243]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (243 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        96  (0.0234032); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.14s 00:00:00.35 Elapsed: 00:00:00.42
# Mc/sec: 763.65
//
Query:       MMETSP1137-20121227|9221_1  [L=453]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        5.1    3.9   8.5        2.1    5.1   0.0    3.4  4  TIGR02636 galM_Leloir: galactose mutarotase


Domain annotation for each model (and alignments):
>> TIGR02636  galM_Leloir: galactose mutarotase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   0.0   0.00052       2.1     160     202 ..       6      48 ..       3      51 .. 0.90
   2 ?   -3.0   0.5      0.15   6.3e+02     121     130 ..     166     175 ..     165     178 .. 0.87
   3 ?    2.1   0.1    0.0045        18      57      88 ..     292     323 ..     249     353 .. 0.81
   4 ?   -0.2   0.0     0.022        91      57      76 ..     372     391 ..     358     402 .. 0.85

  Alignments for each domain:
  == domain 1    score: 5.1 bits;  conditional E-value: 0.00052
   TIGR02636 160 nlTnHvYFNLegeeagsdveeHelqlnadkylpldeegiplge 202
                 + T    FNL+  ++g+ v++ +l+   d ylp+ e  +p+g 
  MMETSP1137-20121227|9221_1   6 SATPSLHFNLSKSSSGNYVLKTQLNQLLDDYLPTLEASLPVGP 48 
                 5677789*********************************985 PP

  == domain 2    score: -3.0 bits;  conditional E-value: 0.15
   TIGR02636 121 pdgdqGfPGn 130
                 +dg +GfPG+
  MMETSP1137-20121227|9221_1 166 RDGVDGFPGE 175
                 69*******7 PP

  == domain 3    score: 2.1 bits;  conditional E-value: 0.0045
   TIGR02636  57 lgatvGryAnRiakgsfeldgekyqlsknqge 88 
                 ++ ++Gr+A+ i + +  ++  +y  ++nq +
  MMETSP1137-20121227|9221_1 292 AAVSIGRFAGHIVQKENAVAIGNYAAHNNQDK 323
                 56789999999998888888888888888866 PP

  == domain 4    score: -0.2 bits;  conditional E-value: 0.022
   TIGR02636  57 lgatvGryAnRiakgsfeld 76 
                 +   +Gr A+R ++g +++ 
  MMETSP1137-20121227|9221_1 372 FSICIGRDAGRFDEGDYNIT 391
                 5678************9985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (453 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        60  (0.014627); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.32u 0.16s 00:00:00.48 Elapsed: 00:00:00.46
# Mc/sec: 1299.81
//
Query:       MMETSP1137-20121227|9223_1  [L=207]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.9e-35  119.3   0.0    4.8e-35  119.0   0.0    1.1  1  TIGR01090 apt: adenine phosphoribosyltransferase
    7.4e-14   49.7   0.0    1.5e-13   48.7   0.0    1.4  1  TIGR01744 XPRTase: xanthine phosphoribosyltransferase
    2.6e-13   47.4   0.0    3.8e-13   46.8   0.0    1.2  1  TIGR01743 purR_Bsub: pur operon repressor PurR
    1.4e-09   35.6   1.5    2.6e-08   31.5   1.0    2.0  1  TIGR01367 pyrE_Therm: orotate phosphoribosyltransferase
    3.3e-09   33.9   0.1    1.4e-07   28.6   0.0    2.1  2  TIGR01251 ribP_PPkin: ribose-phosphate diphosphokinase
    9.5e-07   26.6   0.1    1.6e-06   25.8   0.0    1.4  1  TIGR00336 pyrE: orotate phosphoribosyltransferase
     0.0032   15.3   0.0     0.0051   14.6   0.0    1.3  1  TIGR00201 comF: comF family protein
     0.0052   14.3   0.0      0.009   13.5   0.0    1.3  1  TIGR01091 upp: uracil phosphoribosyltransferase
     0.0076   13.9   0.0      0.011   13.4   0.0    1.4  1  TIGR01203 HGPRTase: hypoxanthine phosphoribosyltransferase


Domain annotation for each model (and alignments):
>> TIGR01090  apt: adenine phosphoribosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  119.0   0.0   1.1e-37   4.8e-35       7     158 ..      25     174 ..      18     182 .. 0.91

  Alignments for each domain:
  == domain 1    score: 119.0 bits;  conditional E-value: 1.1e-37
   TIGR01090   7 kipdfPkkGi.lFrDitpllenaelfrllidqlverlkeakidlvvgleaRGFifgaalalklgvgfvpvRkkgkLpaetvsasYdlEY.gkdkleihkdalkkgkrvlivDDllAtgGtveAaleLikklgaevveaaflielkklkgrkkle 158
                  +p fP k i  F+D+  ll +++lf +l ++++ r+++  i++++g eaRGF+f+ ++a++lgv+f++ Rk+gk+p+   +    +EY g d++ i++ a+ +g++vl++DDl+AtgGt+   +eL+k  gaev e++ ++elk+l+gr++  
  MMETSP1137-20121227|9223_1  25 VVPYFPYKKIeRFYDVQGLLMHPALFGKLCKAIAARYRQLGITKMIGFEARGFLFT-QVAVELGVPFIMARKQGKMPNTSPA---TKEYaGVDVMCIQRGAVGPGDKVLLMDDLIATGGTLCSGIELVKSCGAEVTECCCMVELKALRGRDRCL 174
                 468899998846*******************************************7.69******************87654...35664789********************************************************98865 PP

>> TIGR01744  XPRTase: xanthine phosphoribosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.7   0.0   3.2e-16   1.5e-13      26     168 ..      44     176 ..      32     181 .. 0.84

  Alignments for each domain:
  == domain 1    score: 48.7 bits;  conditional E-value: 3.2e-16
   TIGR01744  26 lnhqldaklmrevgeefarrfadkgitkiltieasGiaPaimtalkldvPvvfakkkkpltltdqlltasvvsftkskestvivskeflsdedrvliiddflanGdaarglvdivkqagakivGlGivieksfqnGreeleel 168
                 l   ++++l  ++ +  a r+++ gitk++  ea G   +  +a++l+vP + a+k+    + +    +s  +    +   +++ +  +++ d+vl++dd++a+G+++ + +++vk +ga++    +++e +   Gr++   +
  MMETSP1137-20121227|9223_1  44 L---MHPALFGKLCKAIAARYRQLGITKMIGFEARGFLFT-QVAVELGVPFIMARKQGK--MPN----TSPATKEYAGVDVMCIQRGAVGPGDKVLLMDDLIATGGTLCSGIELVKSCGAEVTECCCMVELKALRGRDRCLAA 176
                 3...78******************************9865.789***********9754..555....33333333445567999*********************************************9999999986655 PP

>> TIGR01743  purR_Bsub: pur operon repressor PurR
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.8   0.0   8.4e-16   3.8e-13     102     235 ..      39     166 ..      19     175 .. 0.93

  Alignments for each domain:
  == domain 1    score: 46.8 bits;  conditional E-value: 8.4e-16
   TIGR01743 102 yltdllskPsilskiakilasvfaekeidavvtvetkGvPlayavakvlnvslvivrkdskvteGstvsinyvsGssdriqkmslakrslkkGskvllvddflkaGGtvkGlielleefdaelvGigvlidnee 235
                  +  ll++P++  k++k +a  + +  i  ++  e++G  l  +va  l+v+++++rk  k+ + s  + +y       ++ m++ + ++  G kvll+dd++ +GGt+   iel++   ae+     +++ + 
  MMETSP1137-20121227|9223_1  39 DVQGLLMHPALFGKLCKAIAARYRQLGITKMIGFEARGF-LFTQVAVELGVPFIMARKQGKMPNTSPATKEYA-----GVDVMCIQRGAVGPGDKVLLMDDLIATGGTLCSGIELVKSCGAEVTECCCMVELKA 166
                 56789*********************************8.6678999********************999996.....4789********************************************99999765 PP

>> TIGR01367  pyrE_Therm: orotate phosphoribosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.5   1.0   5.7e-11   2.6e-08      26     144 ..      35     164 ..      30     185 .. 0.71

  Alignments for each domain:
  == domain 1    score: 31.5 bits;  conditional E-value: 5.7e-11
   TIGR01367  26 svylqsakllekPklaeklgeelakkilkaklevdvivsPalGGvilgyevaralsvrsifaereng...............emklrrgfevkpGekvvvveDvvttGgsakeaikiieelGgqvvglaaiidr 144
                 +++   + ll++P l  kl++++a    + ++    +++    G + + +va +l v++i a ++++               +m ++rg +v pG+kv++++D+++tGg++   i+++++ G++v   +++++ 
  MMETSP1137-20121227|9223_1  35 ERFYDVQGLLMHPALFGKLCKAIAARYRQLGI--TKMIGFEARGFLFT-QVAVELGVPFIMARKQGKmpntspatkeyagvdVMCIQRG-AVGPGDKVLLMDDLIATGGTLCSGIELVKSCGAEVTECCCMVEL 164
                 56777778899999999999999988777744..34444444444433.5666666666666665442222222222222225778887.79***************************************985 PP

>> TIGR01251  ribP_PPkin: ribose-phosphate diphosphokinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.0     0.012       5.6      80      96 ..      19      35 ..      11      60 .. 0.85
   2 !   28.6   0.0     3e-10   1.4e-07     210     249 ..     125     164 ..      79     184 .. 0.76

  Alignments for each domain:
  == domain 1    score: 3.6 bits;  conditional E-value: 0.012
   TIGR01251 80 aksvtaviPyygYaRqd 96
                a++v  v+Py++Y + +
  MMETSP1137-20121227|9223_1 19 AREVANVVPYFPYKKIE 35
                899**********7655 PP

  == domain 2    score: 28.6 bits;  conditional E-value: 3e-10
   TIGR01251 210 gkdvvivDDiisTggTlvkaaelLkekGAkkvivaathgv 249
                 g +v+++DD+i+TggTl+ ++el+k++GA+   ++++  +
  MMETSP1137-20121227|9223_1 125 GDKVLLMDDLIATGGTLCSGIELVKSCGAEVTECCCMVEL 164
                 679**************************99988887655 PP

>> TIGR00336  pyrE: orotate phosphoribosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.8   0.0   3.6e-09   1.6e-06     102     148 ..     119     165 ..     105     180 .. 0.90

  Alignments for each domain:
  == domain 1    score: 25.8 bits;  conditional E-value: 3.6e-09
   TIGR00336 102 vGelkegkkvvvveDvittGtsileaveaiqeagaevagvivvldrq 148
                  G++ +g+kv++++D+i+tG+ + + +e ++  gaev ++  +++ +
  MMETSP1137-20121227|9223_1 119 RGAVGPGDKVLLMDDLIATGGTLCSGIELVKSCGAEVTECCCMVELK 165
                 59999***********************************9999765 PP

>> TIGR00201  comF: comF family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.0   1.1e-05    0.0051     151     187 ..     124     160 ..     103     163 .. 0.87

  Alignments for each domain:
  == domain 1    score: 14.6 bits;  conditional E-value: 1.1e-05
   TIGR00201 151 qgrkivlvDDvvttGatlaeiaklllklgaaevqvls 187
                 +g k+ l+DD++ tG tl+   +l+   ga+  +  +
  MMETSP1137-20121227|9223_1 124 PGDKVLLMDDLIATGGTLCSGIELVKSCGAEVTECCC 160
                 5789*******************99999998665555 PP

>> TIGR01091  upp: uracil phosphoribosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   0.0     2e-05     0.009     122     159 ..     125     162 ..     113     168 .. 0.88

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 2e-05
   TIGR01091 122 erevivlDPmlAtGgtvvealellkekgakkikvlsiv 159
                 +++v+++D ++AtGgt+++ +el+k+ ga+ + ++++v
  MMETSP1137-20121227|9223_1 125 GDKVLLMDDLIATGGTLCSGIELVKSCGAEVTECCCMV 162
                 5689**********************998877776665 PP

>> TIGR01203  HGPRTase: hypoxanthine phosphoribosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.0   2.4e-05     0.011      85     125 ..     125     165 ..      51     173 .. 0.82

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 2.4e-05
   TIGR01203  85 dkdvLlveDivdtgltlkellellkarkpkslkivtlleKp 125
                 + +vLl++D+++tg tl   +el+k+ +++  + + ++e +
  MMETSP1137-20121227|9223_1 125 GDKVLLMDDLIATGGTLCSGIELVKSCGAEVTECCCMVELK 165
                 789*****************************999999865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (207 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        86  (0.0209654); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         9  (0.00219405); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.25u 0.17s 00:00:00.42 Elapsed: 00:00:00.34
# Mc/sec: 803.58
//
Query:       MMETSP1137-20121227|9224_1  [L=784]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   2.4e-210  698.5  35.7     4e-210  697.8  24.7    1.3  1  TIGR01104 V_PPase: V-type H(+)-translocating pyrophosphatase


Domain annotation for each model (and alignments):
>> TIGR01104  V_PPase: V-type H(+)-translocating pyrophosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  697.8  24.7  9.7e-214    4e-210      25     693 ..      35     732 ..      14     736 .. 0.91

  Alignments for each domain:
  == domain 1    score: 697.8 bits;  conditional E-value: 9.7e-214
   TIGR01104  25 vlkvdvgtekmaeiskaiseGataflfreyktvavllvvlavlilvllgs...vegfs..dlsavafllGavtsllaGylGmkiatranarvtlea.......rkg.lgkalivafrsGavmGlllaalgllvlaililvfksylgddwegliealvglglGassialfarvgGGiytkaadvgadlvGkveagiPeddPrnPaviadnvGdnvGdvaGmgadlfesyvesvvaalvlasisslglnadlt...allyplvlssvgilvsllttlfvk........ikavkeiekalkkqlllstvlmlvgvavisavalptsftslnfatqkevksfqlflcvvvGlvaglligfvteyytstaysPvrdvadssktgaatnviaGlavglksviipiliiaaaiivsyelaglyGiaiaavgllstigivlaidayGPisdnaGGiaemaglseevrertdaldavGnttaaigkGfaigsaalvalalfaafveeaaikkvdvlspkvliGllvGallpylfssltlkavGraalklveevrrqfrtiPglleg.........................takpdyarcvdistkasikemiiPgllavltPlvvglllgvealsgllaGalvsGvqiaisasntGGaWdnakkyieagseharslglkgse..ahkaaviGdtvGdPlkdtsGPslnilikllavvslvlapvlats 693
                  + +d+g+e++  +s  i+ Ga  fl++ey +++v+++ la++++vl+ +    ++fs     +++f+ Ga  s+ aG+ Gm++at  na++t++        +kg l  +l vaf +G+vmG+++++lgl  +++++l+++  + ++++ +++ l g+g+Gassialfarv+GGiytkaadvgadlvGkveagi eddP+nPaviadnvGdnvGdvaGmgadlfesyv s++a+  la  ++ + +a+++    +++++ l ++gi+ s+++ + v+          ++  ++ al+k++ l+  l+l+g +vi++  l  +++s            +++++v++Gl+ g +ig+ tey+ts +++Pv+++ d   tg+at+vi+Gl+vg+ s+++p+l++a+ai+ +  lag yG+ai+avg+lst+gi+la dayGP++dnaGG+ae+a l ++vr +td lda Gnttaa+gkGfaigsa l+al l++af e++   +  v +p vl G+l Ga+lp+lf++lt+ +vG+aa ++++evr qfrt+ +   +                         +  pd  +cv+ist++s++emi Pg  a+l+Pl+ g+l+g   l g+laGa+ sG ++ai+++n+GGaWdn+kk+ e+        glk+s     ka v+GdtvGdP+kdtsGP+lnilikl+++vsl +ap+la++
  MMETSP1137-20121227|9224_1  35 STGKDIGEEQIDALSAQIKSGAVKFLKTEYTYLCVFVASLAIVLFVLFLTtqpENAFSfaMANSLSFIFGASLSASAGWWGMMVATDGNAKTTAACagnkttgQKGtLNEGLKVAFTTGSVMGFAVVGLGLAGISLCYLLLSYTFDAEVD-VVQCLAGFGFGASSIALFARVAGGIYTKAADVGADLVGKVEAGIDEDDPHNPAVIADNVGDNVGDVAGMGADLFESYVGSIIATATLAVSATTDGSASVKpdeKIALAFFLPALGIICSIIGYFAVNtkeegkgwNVELGALMWALEKGMYLAGFLFLIGSYVIVMPIL--GLDS------------GIYFSVIIGLLSGIIIGKFTEYFTSFDFGPVKSIKDRGMTGPATVVIQGLGVGMISTVPPVLVLAVAIVSTAALAGSYGVAISAVGMLSTLGITLATDAYGPVADNAGGLAELAYLDKKVRAITDSLDALGNTTAATGKGFAIGSAVLTALSLLSAFKEKIGERNYSVGEPIVLSGVLSGAMLPFLFAALTMISVGKAAAEIIQEVRDQFRTVKNEAGMtlgecirlytekkeideswkaspaqEVYPDSDKCVEISTRSSVREMIAPGSYAILAPLIGGFLVGPRFLMGMLAGAIASGCMLAIMMANAGGAWDNSKKLCEKL-------GLKKSSpaQQKACVVGDTVGDPFKDTSGPALNILIKLMSMVSLTVAPLLANY 732
                 45679999*********************************999876533133556664346789***************************987423332335667899*******************************998888887.9**********************************************************************************999998777777777777789999****************999955665555345667899****************999987766..5566............6799****************************************************************************************************************************************************************************************************************976544467799*****************998899*************************************************************************987.......5555531268***************************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (784 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       261  (0.0636275); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.14s 00:00:00.67 Elapsed: 00:00:00.64
# Mc/sec: 1616.87
//
Query:       MMETSP1137-20121227|9225_1  [L=388]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (388 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       140  (0.0341297); expected 82.0 (0.02)
Passed bias filter:                      107  (0.0260848); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.18s 00:00:00.48 Elapsed: 00:00:00.35
# Mc/sec: 1463.19
//
Query:       MMETSP1137-20121227|9226_1  [L=363]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      2e-21   74.4   0.0    1.2e-10   38.8   0.0    2.0  2  TIGR01622 SF-CC1: splicing factor, CC1-like family
      8e-13   46.2   0.0    3.5e-07   27.6   0.0    2.0  2  TIGR01628 PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family
    4.4e-11   40.8   0.0      7e-05   20.4   0.0    2.1  2  TIGR01661 ELAV_HUD_SF: ELAV/HuD family splicing factor
    8.4e-10   35.6   0.0    0.00021   17.7   0.0    2.0  2  TIGR01642 U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor
      1e-07   28.9   0.0    1.9e-07   28.0   0.0    1.3  1  TIGR01645 half-pint: poly-U binding splicing factor, half-pint family
     0.0028   14.3   0.0      0.017   11.8   0.0    3.1  3  TIGR01648 hnRNP-R-Q: hnRNP-R, Q splicing factor family
     0.0039   14.7  19.8      0.018   12.5   0.0    3.6  3  TIGR01659 sex-lethal: sex-lethal family splicing factor


Domain annotation for each model (and alignments):
>> TIGR01622  SF-CC1: splicing factor, CC1-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.6   0.0   7.8e-12   4.6e-09     215     279 ..      11      78 ..       2      94 .. 0.86
   2 !   38.8   0.0   2.1e-13   1.2e-10     218     295 ..     119     195 ..     109     203 .. 0.89

  Alignments for each domain:
  == domain 1    score: 33.6 bits;  conditional E-value: 7.8e-12
   TIGR01622 215 nsiadlkLYvGnlhfnitEqeLrqiFe.pFG..eielvqlqkDpetGrskGyGFiqFsdaeeakeAle 279
                 +++ +lkL++G+l ++ tE+ + + F   +G  ++   q+ +D  t +s+G+GF++F+d e a++ ++
  MMETSP1137-20121227|9226_1  11 QAANPLKLFLGGLSYDSTEETIVNYFAxKYGadKVSEAQVVRDRLTSQSRGFGFVTFTDEEVARQVQT 78 
                 46889*********************73588556999***************************9876 PP

  == domain 2    score: 38.8 bits;  conditional E-value: 2.1e-13
   TIGR01622 218 adlkLYvGnlhfnitEqeLrqiFepFGeielvqlqkDpetGrskGyGFiqFsdaeeakeAleklNGlelAGReikvgl 295
                  ++k++vG++   + E+  ++ F  FGe+    l+ Dp+t r +G+GFi F ++e   + l +    e+AG+ + v  
  MMETSP1137-20121227|9226_1 119 NPQKVFVGGVSHAVDEEAFKGYFATFGEVSESWLMYDPQTQRPRGFGFIVFANSEGLSNCLAA-PTHEIAGKMVEVKR 195
                 578***************************************************998888876.56799999888865 PP

>> TIGR01628  PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0   1.2e-06   0.00071      13     341 ..      28      75 ..      13      98 .. 0.55
   2 !   27.6   0.0     6e-10   3.5e-07     288     353 ..     123     193 ..     114     197 .. 0.82

  Alignments for each domain:
  == domain 1    score: 16.6 bits;  conditional E-value: 1.2e-06
   TIGR01628  13 tEavLyelFkevgsvlsvRvCrDsvtrrSLgYaYvNfqnladAerAldtlnyknlkgkpiRlmwsqRdPslRksGvgNifvKnLdksidnkaLfdtFskfGnilsckvatdeeGkSkgYgfvhfedeesAkeAieklNgvllndkevyvgkfikksereatkekkftNlYvKnlddsvtedklrelFakfGeitSaivkkdeknrkrgfafvnyekaedAkkAveelngkkitlaatgkilyVgraqkraeReaelkakfeelkqerkekaqgvNlYvkNlddtvddekLrelFeefG..eitSakvmld.ekekSkgFGFVcfssqeeAnk 341
                 tE+++++ F+                                                                                                                                                                                                                                                                                             ++G  ++  a+v++d  + +S+gFGFV+f+++e A +
  MMETSP1137-20121227|9226_1  28 TEETIVNYFAX--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------KYGadKVSEAQVVRDrLTSQSRGFGFVTFTDEEVARQ 75 
                 44444433332............................................................................................................................................................................................................................................................................................3442235556666664456666666666666555544 PP

  == domain 2    score: 27.6 bits;  conditional E-value: 6e-10
   TIGR01628 288 lYvkNlddtvddekLrelFeefGeitSakvmld.ekekSkgFGFVcfssqeeAnkAv....telhgkilng 353
                 ++v  +  +vd+e  +  F  fGe+  + +m d ++++ +gFGF+ f++ e  ++ +    +e+ gk+++ 
  MMETSP1137-20121227|9226_1 123 VFVGGVSHAVDEEAFKGYFATFGEVSESWLMYDpQTQRPRGFGFIVFANSEGLSNCLaaptHEIAGKMVEV 193
                 677788999************************667889**********9987665522225777777765 PP

>> TIGR01661  ELAV_HUD_SF: ELAV/HuD family splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   0.0   1.2e-07     7e-05     270     324 ..      16      74 ..       3      88 .. 0.79
   2 !   18.6   0.0   4.3e-07   0.00025     270     342 ..     121     193 ..      76     201 .. 0.76

  Alignments for each domain:
  == domain 1    score: 20.4 bits;  conditional E-value: 1.2e-07
   TIGR01661 270 ycifvynlspd.tdeavlqlfg.pfGa..vqsvkiirdlttnkckGygfvsmtnydeaa 324
                   +f+  ls d t+e+++  f+ ++Ga  v + +++rd  t + +G+gfv+ t+ + a 
  MMETSP1137-20121227|9226_1  16 LKLFLGGLSYDsTEETIVNYFAxKYGAdkVSEAQVVRDRLTSQSRGFGFVTFTDEEVAR 74 
                 568888899874688999999647998778999******************99866554 PP

  == domain 2    score: 18.6 bits;  conditional E-value: 4.3e-07
   TIGR01661 270 ycifvynlspdtdeavl.qlfgpfGavqsvkiirdlttnkckGygfvsmtnydeaalailslnGytlgnrvlqv 342
                   +fv  +s   de ++   f+ fG v +  ++ d++t++ +G+gf+  +n +   + +++    +++++++ v
  MMETSP1137-20121227|9226_1 121 QKVFVGGVSHAVDEEAFkGYFATFGEVSESWLMYDPQTQRPRGFGFIVFANSEGLSNCLAA-PTHEIAGKMVEV 193
                 46899999999998888579*******************************8776666554.455666666555 PP

>> TIGR01642  U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0   1.2e-06    0.0007     296     353 ..      15      75 ..       5     100 .. 0.81
   2 !   17.7   0.0   3.6e-07   0.00021     295     380 ..     119     203 ..      92     208 .. 0.85

  Alignments for each domain:
  == domain 1    score: 16.0 bits;  conditional E-value: 1.2e-06
   TIGR01642 296 edklyignLPldlkddqvkeLL.esFGdLk..aFnliKdlatGlsKGyaFceykdssvtdl 353
                 + kl++g+L +d +++ +++    ++G  k    ++++d+ t +s+G++F+ + d  v+ +
  MMETSP1137-20121227|9226_1  15 PLKLFLGGLSYDSTEETIVNYFaXKYGADKvsEAQVVRDRLTSQSRGFGFVTFTDEEVARQ 75 
                 569**************999762689975521689*********************99865 PP

  == domain 2    score: 17.7 bits;  conditional E-value: 3.6e-07
   TIGR01642 295 sedklyignLPldlkddqvkeLLesFGdLkaFnliKdlatGlsKGyaFceykdssvtdlAiaaLnGiklgdkkLnvkrAtvgakqa 380
                 +++k+++g++ + ++++  k     FG++    l+ d +t   +G++F+++ +s      + a    ++ +k+++vkrAt    q+
  MMETSP1137-20121227|9226_1 119 NPQKVFVGGVSHAVDEEAFKGYFATFGEVSESWLMYDPQTQRPRGFGFIVFANSEGLSNCL-AAPTHEIAGKMVEVKRATPRSAQP 203
                 679**************************************************98776655.556789999999999999766665 PP

>> TIGR01645  half-pint: poly-U binding splicing factor, half-pint family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.0   0.0   3.3e-10   1.9e-07     110     280 ..      20     198 ..       6     211 .. 0.78

  Alignments for each domain:
  == domain 1    score: 28.0 bits;  conditional E-value: 3.3e-10
   TIGR01645 110 vGsisfelkedtlrrafd.PfGPik..sinmsWdpvtqkhkgfafveevPeaallaleqmngallGGrnlkvg.......rPsnlpqaqpiidevqeeakkfnri.vasvhpdlseedlksvfeafGeivkcklaraptlrkhkGfGflefenlqsqseaiasmnlfdlGGqllrvGkavtP 280
                 +G +s++  e+t+ + f+  +G  k    ++  d +t + +gf fv    e     + q    ++ Gr +           P   +    + d  +    + +++ v  v   + ee  k  f +fGe+ +  l  +p +++ +GfGf+ f+n +  s+ +a+    ++ G+++ v +a tP
  MMETSP1137-20121227|9226_1  20 LGGLSYDSTEETIVNYFAxKYGADKvsEAQVVRDRLTSQSRGFGFVTFTDEEV-ARQVQTSEHMIDGRSVMARkatpkseTPPGSAFGGGVTDVSALPDYNPQKVfVGGVSHAVDEEAFKGYFATFGEVSESWLMYDPQTQRPRGFGFIVFANSEGLSNCLAAP-THEIAGKMVEVKRA-TP 198
                 79999********99998358986621467889*************8555433.2355666778888887665555545566666666778887776666666777****************************************************999974.57888887777665.44 PP

>> TIGR01648  hnRNP-R-Q: hnRNP-R, Q splicing factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.2   0.0   0.00035       0.2      60     114 ..      17      75 ..       3      86 .. 0.83
   2 !   11.8   0.0   2.8e-05     0.017      43     111 ..     105     174 ..      97     193 .. 0.87
   3 ?  -10.7   7.4         7   4.1e+03     364     397 ..     212     243 ..     195     294 .. 0.61

  Alignments for each domain:
  == domain 1    score: 8.2 bits;  conditional E-value: 0.00035
   TIGR01648  60 evfvGkiPrdlyedelvPlfe.kvG..kiyelrlmmd.ldGknrGyafvtfcnkeeake 114
                  +f+G +  d  e+ +v  f  k G  k+ e +++ d l  + rG+ fvtf++ e a++
  MMETSP1137-20121227|9226_1  17 KLFLGGLSYDSTEETIVNYFAxKYGadKVSEAQVVRDrLTSQSRGFGFVTFTDEEVARQ 75 
                 6899999999999999998863444339************************9999876 PP

  == domain 2    score: 11.8 bits;  conditional E-value: 2.8e-05
   TIGR01648  43 yGGPPPgyegaqPerGcevfvGkiPrdlyedelvPlfekvGkiyelrlmmd.ldGknrGyafvtfcnkee 111
                 +GG   + ++ +      vfvG +   + e+ +   f + G++ e  lm d    + rG+ f++f+n e 
  MMETSP1137-20121227|9226_1 105 FGGGVTDVSALPDYNPQKVFVGGVSHAVDEEAFKGYFATFGEVSESWLMYDpQTQRPRGFGFIVFANSEG 174
                 677778888888888889*********************************667778*********9875 PP

  == domain 3    score: -10.7 bits;  conditional E-value: 7
   TIGR01648 364 kkgsirgrgrgaagsraaGvrGlglrGyeayrgl 397
                  +g   grg  ++g    G+ G+g++Gy  + g 
  MMETSP1137-20121227|9226_1 212 GRGGFGGRGGRGGGGY--GGGGYGGGGYGGGGGY 243
                 4444555544444333..3344444444443333 PP

>> TIGR01659  sex-lethal: sex-lethal family splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.5   0.0     3e-05     0.018     194     250 ..      16      75 ..       4      85 .. 0.78
   2 !    5.0   6.9    0.0059       3.5     196     298 ..     123     240 ..     115     274 .. 0.61
   3 ?   -3.5   0.6       2.3   1.4e+03     292     294 ..     295     297 ..     273     320 .. 0.56

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 3e-05
   TIGR01659 194 tnlyvtnlprtitddqldtifg.kyg..sivqknilrdkltgkprgvafvrfnkreeaqe 250
                   l++  l+   t++ +   f  kyg  ++ + +++rd+lt + rg  fv f   e a++
  MMETSP1137-20121227|9226_1  16 LKLFLGGLSYDSTEETIVNYFAxKYGadKVSEAQVVRDRLTSQSRGFGFVTFTDEEVARQ 75 
                 5678888888888888777774499954588899******************99988865 PP

  == domain 2    score: 5.0 bits;  conditional E-value: 0.0059
   TIGR01659 196 lyvtnlprtitddqldtifgkygsivqknilrdkltgkprgvafvrfnkreeaqeaisalnnvipeggsqpltvrlaeehgk.akaahyms.................klglikygeygtg 298
                 ++v  ++ ++ ++ ++  f  +g++ +  ++ d +t +prg  f+ f   e   + ++a    i   + + + v+ a           +                     g +++g+yg+g
  MMETSP1137-20121227|9226_1 123 VFVGGVSHAVDEEAFKGYFATFGEVSESWLMYDPQTQRPRGFGFIVFANSEGLSNCLAAPTHEI---AGKMVEVKRATPRSAqPPPSRFGPggrggfggrggrggggyGGGGYGGGGYGGG 240
                 78999999*****************************************999999888866544...344444444433322022233332444444445555444332222333333333 PP

  == domain 3    score: -3.5 bits;  conditional E-value: 2.3
   TIGR01659 292 yge 294
                 +g+
  MMETSP1137-20121227|9226_1 295 GGG 297
                 122 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (363 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        87  (0.0212092); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.41u 0.16s 00:00:00.56 Elapsed: 00:00:00.45
# Mc/sec: 1064.71
//
Query:       MMETSP1137-20121227|9227_1  [L=148]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00078   15.0  23.4    0.00081   15.0  16.2    1.0  1  TIGR02169 SMC_prok_A: chromosome segregation protein SMC
     0.0017   14.0  25.8     0.0018   13.9  17.9    1.0  1  TIGR02168 SMC_prok_B: chromosome segregation protein SMC
  ------ inclusion threshold ------
      0.049   10.1  17.2      0.053   10.0  11.9    1.0  1  TIGR02231 TIGR02231: conserved hypothetical protein
       0.17    7.9  14.8       0.28    7.2  10.2    1.4  1  TIGR03007 pepcterm_ChnLen: polysaccharide chain length determinant protein, PEP-CTERM locus subfamily
       0.23    8.1   6.8       0.24    8.0   3.4    1.8  2  TIGR00420 trmU: tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
        1.2    5.4  20.7        1.7    4.9  14.4    1.3  1  TIGR03319 YmdA_YtgF: conserved hypothetical protein YmdA/YtgF
        1.2    5.2  13.9        2.7    4.1   9.6    1.5  1  TIGR00763 lon: ATP-dependent protease La
        2.3    5.2  18.3        1.4    5.9   6.4    2.1  2  TIGR03752 conj_TIGR03752: integrating conjugative element protein, PFL_4705 family
        7.4    3.2  21.0        2.4    4.9   8.1    1.7  2  TIGR01843 type_I_hlyD: type I secretion membrane fusion protein, HlyD family


Domain annotation for each model (and alignments):
>> TIGR02169  SMC_prok_A: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0  16.2   1.8e-06   0.00081     744     881 ..      11     144 ..       1     148 [] 0.75

  Alignments for each domain:
  == domain 1    score: 15.0 bits;  conditional E-value: 1.8e-06
   TIGR02169 744 eeklseleeeleekkeelkeleaeieeleeklaklkealedleaelseekieeieeelekleeevsriearleeieaelnklelekelleeeiqelqeeieeleeqkkeiekeieelkakleeleeeleeleaavreL 881
                 e+kl  +   ++e  +  ++++++i +++ +l++ +  ++dl+a+ +++k   ++ e  k + +  ++e++l+++e+el  ++ +k+ l +   e + +i+ l++++ke+++++e+l+ +++++e++l  +++++++ 
  MMETSP1137-20121227|9227_1  11 ENKLVVT---KKELADATAQYKKKIXAQQVELQANETXIADLQAQNRQQKEAASNME-AKADRVKVELENKLKALEQELGTEKGRKNNLASLLGESKGNIDTLDQRNKELQHQVESLESSKKAVENKLVVTKKELADA 144
                 3333333...34444456678889999999999999999999998877765555444.45677778899999999999999999999999999999999999999999999999999999999999998888888775 PP

>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9  17.9     4e-06    0.0018     269     391 ..      18     144 ..       1     148 [] 0.28

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 4e-06
   TIGR02168 269 leelrlekseleeeleelqkelqelkaeisrleqeieilkerleqlekeleeleeqleel....eskkeeleeelaeleeeleelkeelesleaeleeaeaeleelesrleeleeeleelrsevael 391
                  +el ++ ++ ++++ ++q elq+ ++ i++l+++ +++ke  +++e++ ++++ +le++    e+++ +++ ++++l+  l e k +++ l+++ +e+++++e les+++++e++l   ++e+a++
  MMETSP1137-20121227|9227_1  18 KKELADATAQYKKKIXAQQVELQANETXIADLQAQNRQQKEAASNMEAKADRVKVELENKlkalEQELGTEKGRKNNLASLLGESKGNIDTLDQRNKELQHQVESLESSKKAVENKLVVTKKELADA 144
                 1222223333333333333333333333333333333333333333333332222222220000222222222222222222222333333333333333333333333333333333333333333 PP

>> TIGR02231  TIGR02231: conserved hypothetical protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0  11.9   0.00012     0.053      54     172 ..      13     139 ..       1     147 [. 0.64

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 0.00012
   TIGR02231  54 alvtvktlreltseadseriaelrkkire.......leaeledledradalkklk.kfledirekltepikdlkreeadlkelkklldfaeseieklleedreveakirelekklselenelrallt 172
                 +lv+ k+  ++++ + +++i + + ++++       l+a+ ++++++a+++++++ ++ +++++kl++  ++l  e+   ++l++ll   + +i +l++ ++e++++ + le  ++++en+l ++ +
  MMETSP1137-20121227|9227_1  13 KLVVTKKELADATAQYKKKIXAQQVELQAnetxiadLQAQNRQQKEAASNMEAKAdRVKVELENKLKALEQELGTEKGRKNNLASLLGESKGNIDTLDQRNKELQHQVESLESSKKAVENKLVVTKK 139
                 3444444445555555555555555555500000005555555555555555555777777777777777778889999999999999999999999999999999999999999999998877655 PP

>> TIGR03007  pepcterm_ChnLen: polysaccharide chain length determinant protein, PEP-CTERM locus subfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2  10.2   0.00061      0.28     249     369 ..       7     128 ..       1     147 [. 0.71

  Alignments for each domain:
  == domain 1    score: 7.2 bits;  conditional E-value: 0.00061
   TIGR03007 249 sseldsriealekqLdeLrlrYtdk....hPdviavkreiaeLeerkeeelegeksgseeessanpvyqqlqielaeaeaeiaslearvaelearierlesllreipeveaeltqLnrdyevnks 369
                 ++++++++   +k+L +  ++Y  k      +++a    ia L++++++   +++++s++e++a+ v  +l+ +l+++e e+ + + r+++l + +++ + +++++ + ++el++     e  k+
  MMETSP1137-20121227|9227_1   7 KKAVENKLVVTKKELADATAQYKKKixaqQVELQANETXIADLQAQNRQ---QKEAASNMEAKADRVKVELENKLKALEQELGTEKGRKNNLASLLGESKGNIDTLDQRNKELQHQVESLESSKK 128
                 5666777777777777777777654111145677778888999888655...4777888888888888899999999999999999999999999999999999999998888765444444444 PP

>> TIGR00420  trmU: tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   3.4   0.00053      0.24     258     331 ..       7      81 ..       4      87 .. 0.83
   2 ?   -0.6   0.0      0.22     1e+02     204     228 ..      92     116 ..      83     123 .. 0.80

  Alignments for each domain:
  == domain 1    score: 8.0 bits;  conditional E-value: 0.00053
   TIGR00420 258 kdleknellvsk....dkeelaskellveelswlkkpkalelrltvkiRyrqkpvscklkllkdnlievsldepqaav 331
                 k + +n+l+v+k    d  ++++k++ ++++++  + + +     +++  rq++  ++    k ++++v+l+++ +a+
  MMETSP1137-20121227|9227_1   7 KKAVENKLVVTKkelaDATAQYKKKIXAQQVELQANETXI---ADLQAQNRQQKEAASNMEAKADRVKVELENKLKAL 81 
                 77889*****998888999999999999999876555444...4888999999998899999999********98875 PP

  == domain 2    score: -0.6 bits;  conditional E-value: 0.22
   TIGR00420 204 kdflkkylpvkkGeiidvdtekvig 228
                 k+ l+  l ++kG+i ++d++++  
  MMETSP1137-20121227|9227_1  92 KNNLASLLGESKGNIDTLDQRNKEL 116
                 678999999*******999876544 PP

>> TIGR03319  YmdA_YtgF: conserved hypothetical protein YmdA/YtgF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9  14.4    0.0037       1.7      21     140 ..      28     143 ..       4     147 .. 0.72

  Alignments for each domain:
  == domain 1    score: 4.9 bits;  conditional E-value: 0.0037
   TIGR03319  21 kiaekkleeaeeeakkiieeakkeaeakkkealleakeevkklreelekelkerrkelqklekrlkqkeekldrkkeklekkeeelekkekeleekekeleekeeeleellkeqkeeLek 140
                   ++   +++e +a++      +  ++++kea  ++  ++ +++ ele++lk+ ++el +++ r ++    l + k     + ++l++++kel+++ ++le+ ++ +e++l  +k+eL  
  MMETSP1137-20121227|9227_1  28 YKKKIXAQQVELQANETXIADLQAQNRQQKEAASNMEAKADRVKVELENKLKALEQELGTEKGRKNNLASLLGESK----GNIDTLDQRNKELQHQVESLESSKKAVENKLVVTKKELAD 143
                 2223334555666666666666677778899999999999999999999999999999999988888888887777....4446777777778888888887777777777777777754 PP

>> TIGR00763  lon: ATP-dependent protease La
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   9.6    0.0059       2.7     197     291 ..      34     132 ..       5     143 .. 0.72

  Alignments for each domain:
  == domain 1    score: 4.1 bits;  conditional E-value: 0.0059
   TIGR00763 197 kkvlellkkelelaklq..ekiakkveeklekeqr..eylLkeqlkaikkElGeekdkkdelieklkekleelklpeevlkviekeleklelleassse 291
                  + +el  +e+ +a lq  ++ +k+   ++e +    +  L+++lka+ +ElG+ek +k++l++ l e   +++  ++  k++++++e le  + + ++
  MMETSP1137-20121227|9227_1  34 AQQVELQANETXIADLQaqNRQQKEAASNMEAKADrvKVELENKLKALEQELGTEKGRKNNLASLLGESKGNIDTLDQRNKELQHQVESLESSKKAVEN 132
                 34567777777777665116677778888876543126789*********************8888888888888888888888888888877665544 PP

>> TIGR03752  conj_TIGR03752: integrating conjugative element protein, PFL_4705 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   6.4     0.003       1.4      67     122 ..      38      93 ..       5     101 .. 0.86
   2 ?    5.0   1.3    0.0057       2.6      69     103 ..     100     134 ..      90     148 .] 0.74

  Alignments for each domain:
  == domain 1    score: 5.9 bits;  conditional E-value: 0.003
   TIGR03752  67 elkelrkelaklekeNeklkkenerlkkreesvderiqqaleaekkelkkekeqlk 122
                 el++ ++ +a+l+++N+++k+  ++++++ ++v+ +++++l+a ++el +ek + +
  MMETSP1137-20121227|9227_1  38 ELQANETXIADLQAQNRQQKEAASNMEAKADRVKVELENKLKALEQELGTEKGRKN 93 
                 67888999**************************************9998887654 PP

  == domain 2    score: 5.0 bits;  conditional E-value: 0.0057
   TIGR03752  69 kelrkelaklekeNeklkkenerlkkreesvderi 103
                  e + ++++l++ N++l+++ e+l+++++ v++++
  MMETSP1137-20121227|9227_1 100 GESKGNIDTLDQRNKELQHQVESLESSKKAVENKL 134
                 45667899999*************99988887765 PP

>> TIGR01843  type_I_hlyD: type I secretion membrane fusion protein, HlyD family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   9.3     0.092        42     161     245 ..       2      87 ..       1      97 [. 0.71
   2 ?    4.9   8.1    0.0052       2.4      80     168 ..      50     143 ..      48     148 .] 0.60

  Alignments for each domain:
  == domain 1    score: 0.7 bits;  conditional E-value: 0.092
   TIGR01843 161 glqaqlqalrqqleliseelealrkLkekgl.vsrlelLelereraelqgelaeleaeleklkaeldeleeklqeleqkfreevse 245
                 +l++  +a++++l + ++el ++   ++k++  +++el + e  +a+lq++ ++++  +++++a++d+++ +l++  + + +e+ +
  MMETSP1137-20121227|9227_1   2 SLESSKKAVENKLVVTKKELADATAQYKKKIxAQQVELQANETXIADLQAQNRQQKEAASNMEAKADRVKVELENKLKALEQELGT 87 
                 56777778888888888888766555555541556677777888888888888888888888888888888888777777766655 PP

  == domain 2    score: 4.9 bits;  conditional E-value: 0.0052
   TIGR01843  80 eadaaelesqvlaleaevarlraeanseeaiefpdillsae.d....avaelvkeqeslfesrksalraqlesleaqikqleaeleglqaqlqa 168
                 +a+ +++++ ++++ea++ r+++e++++  +  ++  +++  +     +    k++ + +++r+++l+ q+esle+  k  e++l   +++l+ 
  MMETSP1137-20121227|9227_1  50 QAQNRQQKEAASNMEAKADRVKVELENKLKALEQELGTEKGrKnnlaSLLGESKGNIDTLDQRNKELQHQVESLESSKKAVENKLVVTKKELAD 143
                 6888888888999999999999998887765444333443332433333344455556666677777777777776666666666555555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (148 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       585  (0.142613); expected 82.0 (0.02)
Passed bias filter:                      160  (0.0390054); expected 82.0 (0.02)
Passed Vit filter:                        23  (0.00560702); expected 4.1 (0.001)
Passed Fwd filter:                        11  (0.00268162); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.34u 0.19s 00:00:00.53 Elapsed: 00:00:00.45
# Mc/sec: 434.10
//
Query:       MMETSP1137-20121227|9228_1  [L=295]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.11   10.3   8.3      0.053   11.3   4.2    1.6  2  TIGR03979 His_Ser_Rich: His-Xaa-Ser repeat protein HxsA
        6.8    3.6  10.5        9.2    3.2   7.3    1.1  1  TIGR00601 rad23: UV excision repair protein Rad23


Domain annotation for each model (and alignments):
>> TIGR03979  His_Ser_Rich: His-Xaa-Ser repeat protein HxsA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0      0.61   1.2e+03      74      95 ..      30      51 ..      28      56 .. 0.82
   2 ?   11.3   4.2   2.6e-05     0.053      80     146 ..     114     180 ..     103     200 .. 0.78

  Alignments for each domain:
  == domain 1    score: -2.9 bits;  conditional E-value: 0.61
   TIGR03979 74 SgsGGgyvvrskdtstysapvp 95
                S  GG ++  + +++++++pv 
  MMETSP1137-20121227|9228_1 30 SYVGGASAFVHAPSAQRAYPVH 51
                5679999999999999999975 PP

  == domain 2    score: 11.3 bits;  conditional E-value: 2.6e-05
   TIGR03979  80 yvvrskdtstysapvpsksyspssgslvkslptttgvksqssksnanseklkelvirvQlaLvvkgy 146
                 ++++  ++s  s + ps+s+s++s s+  s+p++ +    + +++++  k++e + +  +  ++  +
  MMETSP1137-20121227|9228_1 114 SSSPPPPSSSSSPSSPSPSPSSPSPSSPSSSPAPGTDDGAADAEKTERKKRQEALKKARAVFTSMDL 180
                 34455556777777899999999999999******99999******999999998888877777665 PP

>> TIGR00601  rad23: UV excision repair protein Rad23
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   7.3    0.0045       9.2      80     158 ..     112     192 ..      95     213 .. 0.54

  Alignments for each domain:
  == domain 1    score: 3.2 bits;  conditional E-value: 0.0045
   TIGR00601  80 vkakaaePaatpesaptptpsatpasva.ekksaaPas..aveeessaeeeatatalesedtsaesegdsdretlvvGsere 158
                  ++++ +P+++++s ++p+ps+  +s++ +++s+aP +   +++ +++e+++   al++  +   ++ d d ++ v+ +e+e
  MMETSP1137-20121227|9228_1 112 LSSSSPPPPSSSSSPSSPSPSPSSPSPSsPSSSPAPGTddGAADAEKTERKKRQEALKKARAVF-TSMDLDGDGAVTKAEME 192
                 3344455555555555566644444443034445554322233333344444444443333333.34556666666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (295 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        98  (0.0238908); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.25u 0.17s 00:00:00.42 Elapsed: 00:00:00.36
# Mc/sec: 1081.58
//
Query:       MMETSP1137-20121227|9229_1  [L=236]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (236 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        89  (0.0216967); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.13s 00:00:00.34 Elapsed: 00:00:00.33
# Mc/sec: 943.92
//
Query:       MMETSP1137-20121227|9230_1  [L=685]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0017   15.9   0.4      0.003   15.1   0.3    1.3  1  TIGR02032 GG-red-SF: geranylgeranyl reductase family
     0.0028   14.2   0.0      0.057    9.9   0.0    2.1  2  TIGR02734 crtI_fam: phytoene desaturase
  ------ inclusion threshold ------
      0.025   11.5   0.0      0.038   10.9   0.0    1.2  1  TIGR01790 carotene-cycl: lycopene cyclase family protein


Domain annotation for each model (and alignments):
>> TIGR02032  GG-red-SF: geranylgeranyl reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.3   2.2e-06     0.003       2      34 ..       2      34 ..       1      41 [. 0.92

  Alignments for each domain:
  == domain 1    score: 15.1 bits;  conditional E-value: 2.2e-06
   TIGR02032  2 DvvvvGaGpaGssaAlrlakkGlrVlllekkel 34
                Dv+vvG G   +++A+  a++G rVl l+ ++ 
  MMETSP1137-20121227|9230_1  2 DVIVVGTGMTEAILAAACARAGKRVLHLDAHAY 34
                *****************************9976 PP

>> TIGR02734  crtI_fam: phytoene desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.1     0.011        15       1      39 [.       3      41 ..       3      48 .. 0.91
   2 !    9.9   0.0   4.2e-05     0.057     216     286 ..     345     415 ..     339     439 .. 0.88

  Alignments for each domain:
  == domain 1    score: 2.0 bits;  conditional E-value: 0.011
   TIGR02734  1 avViGaGlgGLAlAirLaaaGievtvlekrdkpGGRagv 39
                ++V+G+G+    lA+  a+aG +v  l++++  G R  +
  MMETSP1137-20121227|9230_1  3 VIVVGTGMTEAILAAACARAGKRVLHLDAHAYYGSRNAS 41
                69********99**********************99876 PP

  == domain 2    score: 9.9 bits;  conditional E-value: 4.2e-05
   TIGR02734 216 GtsalvealaklaedlggelrlnaeveeietegerataveledgerleadavvsnaDlvhtykkllreeer 286
                 Gt++l++a  +l +  gg++ l ++  +i+ +++ + ++++++g++++++ +v+n+D+  +  +  + +er
  MMETSP1137-20121227|9230_1 345 GTAELPQAFCRLCAVWGGTYMLGNSAYTIALREGAVAGIRNARGHATRCEWLVLNGDVRVSGGERHEPSER 415
                 999*******************************************************9887766555554 PP

>> TIGR01790  carotene-cycl: lycopene cyclase family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   2.8e-05     0.038       1      35 [.       2      36 ..       2      49 .. 0.89

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 2.8e-05
   TIGR01790  1 DliviGgGlAglaiAlelakpglrvqlieaapklp 35
                D+iv+G G+   ++A++ a++g rv  ++a++  +
  MMETSP1137-20121227|9230_1  2 DVIVVGTGMTEAILAAACARAGKRVLHLDAHAYYG 36
                9****************************998755 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (685 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       112  (0.0273038); expected 82.0 (0.02)
Passed bias filter:                      100  (0.0243784); expected 82.0 (0.02)
Passed Vit filter:                        34  (0.00828864); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.50u 0.16s 00:00:00.66 Elapsed: 00:00:00.47
# Mc/sec: 1923.67
//
Query:       MMETSP1137-20121227|9231_1  [L=358]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.6e-24   83.6   5.9    7.5e-24   82.6   4.1    1.5  1  TIGR00817 tpt: Tpt phosphate/phosphoenolpyruvate translocator
     0.0033   14.7  18.1      0.013   12.8  11.7    2.3  2  TIGR00950 2A78: carboxylate/amino acid/amine transporter


Domain annotation for each model (and alignments):
>> TIGR00817  tpt: Tpt phosphate/phosphoenolpyruvate translocator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.6   4.1   3.7e-27   7.5e-24       5     297 ..      28     345 ..      24     353 .. 0.77

  Alignments for each domain:
  == domain 1    score: 82.6 bits;  conditional E-value: 3.7e-27
   TIGR00817   5 llfllwyvlnvyFnivnkkllklfh.....ypvlktlvslavgvllells.............wssilkkrlkiskallklllpvaivhtighvtsnvslskvavSfthtikalepifsvvlskfflgrefpltlylsLlpivlGvalasltelsfnllgflsamisniefvarnifs..Kkiltkk..........sldkl.nlyalisililfllspiafiveglklltreflqaiskvnvlklvtvslvaalgifHlyqqvafqllervspltysvgNvlKRvvvIvvSilffetkisflqvlGvilaiaGvflYskvkak 297
                 l++l w v n y+n+ nk   +         +v++++++lav  ++++l               + + + r++is + +  ++ + ++ t  h +  v l++ +v f  ++ka ep+fs+v++ ++  ++  l+ +l L +iv+Gva  +l+       ++     ++++    n+f+  K    +k           l ++ n + +  +l+l++++p  +++eg +  +  f++   k+  ++ +   l++    f +y+ +a++++++  ++t sv+N+ KR ++Iv  +l +++ + + + +G+++ai  v+lYs v + 
  MMETSP1137-20121227|9231_1  28 LFYLFWFVGNYYYNVWNKLACNETGgkdggLAVTVSVMQLAVCAVYAILLwifgynpvslfglQAPTKQPRPNISISDVLSMMALVVCYTGAHCAGVVTLNAGSVAFGQIVKAAEPVFSAVVNTVVYSKSPSLAKWLCLPLIVGGVAISTLKPNYTGGYSIEMDQTALLAGSVCNLFAafK-GSENKkmietpglkdRLGSVgNQFGMTNVLALLVSIPLMLLMEGANWPK--FVELF-KSSPTFRF--NLIMSGIAFYVYNELATMTIKQTGAVTASVANTAKRAFIIVGVALALGKELRYEEKVGATVAIGAVMLYSLVDHI 345
                 45556666688899***8887765422222789****************93333433333322223334578889999999999***************************************************************8888766666666555555555555555555221.22222355556888844444256777779***************98665..77773.44444444..4555555899********************************9***************************99876 PP

>> TIGR00950  2A78: carboxylate/amino acid/amine transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.6     0.075   1.5e+02     197     255 ..      27      89 ..       9      92 .. 0.70
   2 !   12.8  11.7   6.3e-06     0.013      40     260 ..      86     333 ..      57     342 .. 0.66

  Alignments for each domain:
  == domain 1    score: -0.6 bits;  conditional E-value: 0.075
   TIGR00950 197 allyLgligtllayflynkglke....vdasaasilalleplvallLgllilgetlslvqlig 255
                  l+yL  +     y+++nk + +     d++ a+++++++  v ++ ++l++    ++v+l+g
  MMETSP1137-20121227|9231_1  27 LLFYLFWFVGNYYYNVWNKLACNetggKDGGLAVTVSVMQLAVCAVYAILLWIFGYNPVSLFG 89 
                 456666666666688888887652222456778888888888888888888887777777777 PP

  == domain 2    score: 12.8 bits;  conditional E-value: 6.3e-06
   TIGR00950  40 r......nslkrllrllllgalqlgvfyvllf.......lavkkltvaiaalllvlaPlyvtllsdllekervrkkkllAavlalaGivlllsdg......nlsislaGlllgllsgisfAlgtvlakrlvkkeglellqftgfvvlliG...allllpfalll..gpnlqalpatslqwlallyLgligtllayflynkglk....evdasaasilalleplvallLgl.lilgetlslvqliggalil 260
                        + +++  ++ +  +l++++ +v+++       ++ +  +va+  ++ +  P+++++   ++  + ++  k+l + l + G+++   +       +++++ ++ll+g + ++ +A+     k+++++ gl+    +   ++ +    all+ + ++ll  g n+ +   +  +    +   li +++a+ +yn  ++    +  a++as+ ++++    +++g+ l+lg++l   + +g+ + +
  MMETSP1137-20121227|9231_1  86 SlfglqaPTKQPRPNISISDVLSMMALVVCYTgahcagvVTLNAGSVAFGQIVKAAEPVFSAVVNTVVYSKSPSLAKWLCLPLIVGGVAISTLKPnytggySIEMDQTALLAGSVCNLFAAFKGSENKKMIETPGLKDRLGSVGNQFGMTnvlALLVSIPLMLLmeGANWPKFVELF-KSSPTFRFNLIMSGIAFYVYNELATmtikQTGAVTASVANTAKRA-FIIVGVaLALGKELRYEEKVGATVAI 333
                 355555544555555555555555555555542222222778889999999**************************************99866655567888999***************************99875443332455444111666666555541145666655443.22357999*************986522227788888888887632.23333313345555554444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (358 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       144  (0.0351048); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.32u 0.10s 00:00:00.42 Elapsed: 00:00:00.65
# Mc/sec: 726.96
//
Query:       MMETSP1137-20121227|9233_1  [L=107]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0017   15.8   4.2      0.027   11.8   0.7    2.3  3  TIGR01944 rnfB: electron transport complex, RnfABCDGE type, B subunit


Domain annotation for each model (and alignments):
>> TIGR01944  rnfB: electron transport complex, RnfABCDGE type, B subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.9   0.2   0.00022      0.91      53      91 ..       3      46 ..       1      50 [. 0.74
   2 !   11.8   0.7   6.6e-06     0.027      48      91 ..      27      75 ..      16      78 .. 0.85
   3 !   10.0   0.3   2.4e-05       0.1      47      91 ..      55     104 ..      49     107 .] 0.81

  Alignments for each domain:
  == domain 1    score: 6.9 bits;  conditional E-value: 0.00022
   TIGR01944 53 GypGCrpyaeaiaegea...in..kCpPGGeavieklaellgve 91
                G +GC+ +ae + +++a   i+   C   G+++ ++lae l+++
  MMETSP1137-20121227|9233_1  3 GDEGCKALAEGLXTNQAltsIDlwDCSYIGDEGCKALAEGLKIN 46
                66899999999999888433334459999999999999988876 PP

  == domain 2    score: 11.8 bits;  conditional E-value: 6.6e-06
   TIGR01944 48 qCgqCGypGCrpyaeaiaegea...in..kCpPGGeavieklaellgve 91
                +C+  G +GC+ +ae +  ++a   in  +C   G+++ ++lae l+++
  MMETSP1137-20121227|9233_1 27 DCSYIGDEGCKALAEGLKINQAltcINlsHCSGIGDEGCKALAEXLKIN 75
                6999999*********999887444433389999************987 PP

  == domain 3    score: 10.0 bits;  conditional E-value: 2.4e-05
   TIGR01944  47 tqCgqCGypGCrpyaeaiaegea...in..kCpPGGeavieklaellgve 91 
                 ++C+  G +GC+ +ae +  ++a   i+   C   G+ + ++lae l+++
  MMETSP1137-20121227|9233_1  55 SHCSGIGDEGCKALAEXLKINQAltgIDlsYCSGXGDXGWKALAEGLKIN 104
                 789*************9988877434332279999*********999887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (107 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        29  (0.00706972); expected 82.0 (0.02)
Passed bias filter:                       28  (0.00682594); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.15u 0.13s 00:00:00.28 Elapsed: 00:00:00.89
# Mc/sec: 158.68
//
Query:       MMETSP1137-20121227|9234_1  [L=544]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.7e-21   71.7   0.1    7.3e-20   68.1   0.1    1.9  1  TIGR04121 DEXH_lig_assoc: DEXH box helicase, DNA ligase-associated
    3.9e-16   56.3   0.3    1.6e-12   44.3   0.0    2.0  2  TIGR03817 DECH_helic: helicase/secretion neighborhood putative DEAH-box helicase
    1.3e-15   54.7   1.0    9.7e-15   51.8   0.1    2.1  2  TIGR01389 recQ: ATP-dependent DNA helicase RecQ
    7.2e-15   52.5   0.1    1.8e-12   44.6   0.1    2.1  2  TIGR00614 recQ_fam: ATP-dependent DNA helicase, RecQ family
    0.00022   18.3   0.0     0.0024   14.9   0.0    2.1  2  TIGR01587 cas3_core: CRISPR-associated helicase Cas3
    0.00054   15.4   0.0      0.021   10.2   0.0    2.1  2  TIGR01054 rgy: reverse gyrase
     0.0035   13.9   0.0       0.43    7.0   0.0    2.1  2  TIGR00643 recG: ATP-dependent DNA helicase RecG
     0.0091   12.4   0.0        1.4    5.2   0.0    2.3  2  TIGR00595 priA: primosomal protein N'
  ------ inclusion threshold ------
      0.022   11.6   0.0        2.5    4.8   0.0    2.2  2  TIGR04095 dnd_restrict_1: DNA phosphorothioation system restriction enzyme
      0.023   10.7   0.0       0.12    8.4   0.0    1.8  2  TIGR00631 uvrb: excinuclease ABC subunit B
      0.037   10.0   0.0       0.09    8.8   0.0    1.6  1  TIGR01407 dinG_rel: putative DnaQ family exonuclease/DinG family helicase


Domain annotation for each model (and alignments):
>> TIGR04121  DEXH_lig_assoc: DEXH box helicase, DNA ligase-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.1   0.1     2e-22   7.3e-20      14     366 ..      84     445 ..      80     470 .. 0.74

  Alignments for each domain:
  == domain 1    score: 68.1 bits;  conditional E-value: 2e-22
   TIGR04121  14 prafQkevleaaeegesglliapTGaGKTlavflpsliela......akekpkkglkvlyitPLkaLakdieraleapieelgleirvelrtGDtssserarqrkkppdiLltTpEslaLllsskdaeklfkdlravvvDElHeLlgskRGdlleLaLarLrrlapelrvvglsATvgnleeaaevllgeekeekaklvkakekkalev....esllpeeeek..lPwaGhlg.lkaleevleeikkart.....tlvFtNtRsqaEllfqaLleaneelaleialhHgsldkeqRekveaalkagklravvcTssLdLGvDfgdvdlviqvGspkgvaRllQRiGRsnHrldepskillvptnalEllEa 366
                 p + Q +++ a++ g + +l a TG+GKTl+  +p++ +l+        +++ +  +++ + P + La ++++  ++ +++++l+++v    G  ++  +++  +kp d+L+ Tp  l  ll +   + ++ d+r vv+DE+  +++   Gd l+  L    r   +  + + + T+++  +  +v + + k ++ +l + +  +a++v     + +p++ ++  +  +G  + ++ l ++l   +++ +     +++F+N  + a ++ ++L+e+        a +Hg++ +++R    + +++g+  ++v+T     G+D  dv  v+q   pk++a  l R GR++ + ++ +   lv  +  El+ a
  MMETSP1137-20121227|9234_1  84 PNPLQVQAIPALSGGADVVLGAQTGSGKTLTYLIPVMQRLKadedfsGVRSKPRRPRAIVLVPTRELALQVHEVGRSICRQVRLSVSV--IHGGVPEGPQRKIFDKPVDLLVATPGRLLQLLQK--GAVYLGDVRQVVIDEVDTMFEAGFGDELDRILRITTRDLSADPRAAAAETLEERVQHIAVGATHPK-AAMALYQKRLGGAKQVmvsgMHSVPRTLQQrfITCKGPDAkVTELRTLLGDPDESGSpslgrVVLFCNSQNSARFVDHTLVEHGYA----TANYHGAVPANMRADNFKRFREGEAAVLVTTDVAARGLDNLDVAHVVQFDFPKNAADYLHRCGRTARAGKSGTVYSLVTKHDTELVRA 445
                 678899**********************************9777776334444777889999******************99887666..5799**********************99888854..5789**********************9986653322222222233334455444444333333333.22333333222222220000122233222211334443331445556665555554332333799************999987666....899***************************************************************99998899999999****9854 PP

>> TIGR03817  DECH_helic: helicase/secretion neighborhood putative DEAH-box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.3   0.0   4.4e-15   1.6e-12      22     186 ..      69     242 ..      59     300 .. 0.79
   2 !   10.2   0.0   8.9e-05     0.033     300     386 ..     352     439 ..     333     444 .. 0.79

  Alignments for each domain:
  == domain 1    score: 44.3 bits;  conditional E-value: 4.4e-15
   TIGR03817  22 epdvvaaleaaGieapwqhqaraaelahaGehvvvatgtasGkslayllPvlsalaed..........pratalylaPtkalaadqlravkelee.rdvraatydGdtpae.erewirekaryvltnPdmlhlgilpsharWakflralryvvvdechs.yrGvfGshvalvlrrlrr 186
                 +p   ++ ++  +++p   q++a  +   G +vv+ + t sGk+l+yl+Pv+++l++d          +r +a+ l Pt+ la     + +++ +   + +++  G  p+  +r+   +  +++++ P  l    l+  ++ a +l+++r vv+de+ + +   fG ++ ++lr   r
  MMETSP1137-20121227|9234_1  69 APRFATRXKRLAVNSPNPLQVQAIPALSGGADVVLGAQTGSGKTLTYLIPVMQRLKADedfsgvrskpRRPRAIVLVPTRELALQVHEVGRSICRqVRLSVSVIHGGVPEGpQRKIFDKPVDLLVATPGRL----LQLLQKGAVYLGDVRQVVIDEVDTmFEAGFGDELDRILRITTR 242
                 566777888999999******************************************988888877766999***********976666666654245667777777776516677777788999999865....66668899*************9852556677666666654333 PP

  == domain 2    score: 10.2 bits;  conditional E-value: 8.9e-05
   TIGR03817 300 aelaervaayraGylaedrreleralkdGellgvaatnalelGvdisGldavviaGfPGtvaslwqqaGraGrrgqdalv.vlvardd 386
                  e +   a y +   a+ r +  +++++Ge   +++t+    G+d   +  vv   fP   a +  + Gr+ r+g+   v  lv++ d
  MMETSP1137-20121227|9234_1 352 VEHGYATANYHGAVPANMRADNFKRFREGEAAVLVTTDVAARGLDNLDVAHVVQFDFPKNAADYLHRCGRTARAGKSGTVySLVTKHD 439
                 4444456777776667777777899**************************************************9754416776655 PP

>> TIGR01389  recQ: ATP-dependent DNA helicase RecQ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.0     0.065        24      16      50 ..      86     120 ..      81     124 .. 0.86
   2 !   51.8   0.1   2.6e-17   9.7e-15     228     339 ..     335     446 ..     325     463 .. 0.93

  Alignments for each domain:
  == domain 1    score: 1.0 bits;  conditional E-value: 0.065
   TIGR01389  16 ggqeeiieevldgrdvlavlPtGGGkslCYqvPaL 50 
                 + q + i ++  g dv+    tG Gk l Y +P +
  MMETSP1137-20121227|9234_1  86 PLQVQAIPALSGGADVVLGAQTGSGKTLTYLIPVM 120
                 567888899999999999999************76 PP

  == domain 2    score: 51.8 bits;  conditional E-value: 2.6e-17
   TIGR01389 228 iiYassRkkveelaeaLeskgiealaYhaGlskkvRaeaqekFleddvkvvvatvaFGmGidksdvRfvihldlPknlesyyqeaGRaGRDGlkaeaillyseaDlallkrl 339
                 +++++s +    + ++L ++g++++ Yh+ +  ++Ra++ ++F e +++v+v t     G+d  dv +v+ +d Pkn   y    GR  R G+      l +++D +l + +
  MMETSP1137-20121227|9234_1 335 VLFCNSQNSARFVDHTLVEHGYATANYHGAVPANMRADNFKRFREGEAAVLVTTDVAARGLDNLDVAHVVQFDFPKNAADYLHRCGRTARAGKSGTVYSLVTKHDTELVRAI 446
                 789*********************************************************************************************9999999999998865 PP

>> TIGR00614  recQ_fam: ATP-dependent DNA helicase, RecQ family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.8   0.0    0.0028         1      12      48 ..      84     120 ..      76     125 .. 0.86
   2 !   44.6   0.1   4.9e-15   1.8e-12     230     341 ..     335     446 ..     326     464 .. 0.94

  Alignments for each domain:
  == domain 1    score: 5.8 bits;  conditional E-value: 0.0028
   TIGR00614  12 frpvqlevinavlegrdalvvmatGgGksLCyqlpav 48 
                   p q+++i a   g d+++   tG Gk L y +p +
  MMETSP1137-20121227|9234_1  84 PNPLQVQAIPALSGGADVVLGAQTGSGKTLTYLIPVM 120
                 578999***9988899****************99975 PP

  == domain 2    score: 44.6 bits;  conditional E-value: 4.9e-15
   TIGR00614 230 iiYClsrkkveqvaaeLqkkglaaaaYhagleesarkevqkkflrdeiqvvvatvafGmGinkpdvRfvihyslpksiesYYqesGRaGRDglksecvlfyapaDvallrrl 341
                 +++C+s++++  v ++L ++g a+a Yh  +  + r++  k+f + e  v+v t     G++  dv +v+ ++ pk+   Y    GR  R g   +   + +++D  l+r +
  MMETSP1137-20121227|9234_1 335 VLFCNSQNSARFVDHTLVEHGYATANYHGAVPANMRADNFKRFREGEAAVLVTTDVAARGLDNLDVAHVVQFDFPKNAADYLHRCGRTARAGKSGTVYSLVTKHDTELVRAI 446
                 78****************************************************9999***********************************************9998876 PP

>> TIGR01587  cas3_core: CRISPR-associated helicase Cas3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.0     0.096        36       2      26 ..     101     125 ..     100     151 .. 0.83
   2 !   14.9   0.0   6.4e-06    0.0024     153     322 ..     257     428 ..     231     447 .. 0.77

  Alignments for each domain:
  == domain 1    score: 1.1 bits;  conditional E-value: 0.096
   TIGR01587   2 lvieAPtGyGKteaallwalklikk 26 
                 +v+ A tG+GKt + l+  ++++k 
  MMETSP1137-20121227|9234_1 101 VVLGAQTGSGKTLTYLIPVMQRLKA 125
                 7999********9988877776665 PP

  == domain 2    score: 14.9 bits;  conditional E-value: 6.4e-06
   TIGR01587 153 dvdvkillmsAtlpkllkeylekielveen.ealdlkeekrfenqrislie..kdkleeisslerl..lealkkekkvliivNtVdrAqelyqklkekapeeeiiLlHsrftekdrekkEaellkelkknekfvivaTQviEvslD.isvdvlitelapids..LiQRlGRlaRygrk 322
                 + +v+++   At pk  + +++k     ++     ++  +r  +qr++ ++  ++k+ e+++l +      +++ ++v++++N+ + A+ + + l e++ +     +H+    + r++      k++++ e  v+v+T v+  +lD ++v  ++    p ++     R+GR aR g+ 
  MMETSP1137-20121227|9234_1 257 EERVQHIAVGATHPKAAMALYQKRLGGAKQvMVSGMHSVPRTLQQRFITCKgpDAKVTELRTLLGDpdESGSPSLGRVVLFCNSQNSARFVDHTLVEHGYA--TANYHGAVPANMRADN----FKRFREGEAAVLVTTDVAARGLDnLDVAHVVQFDFPKNAadYLHRCGRTARAGKS 428
                 56778888888888776666666544444403444455778888898877633566777777655533456778899********************9998..899**********999....8*********************8799999998777765523568*******7664 PP

>> TIGR01054  rgy: reverse gyrase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.2   0.0   5.6e-05     0.021     123     227 ..     138     241 ..     106     290 .. 0.80
   2 !    3.3   0.0    0.0067       2.5     155     188 ..     357     390 ..     334     445 .. 0.70

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 5.6e-05
   TIGR01054 123 gkrvyiilPttlLvkqvaeklsslaekeglnirvvayhsklstkekkevkeriengdfdilittsaflsknleklk...ykFdlvfvDDvDalLkas..knvdrilkllG 227
                 + r+ +++Pt+ L+ qv e  +s+ ++  l+  v ++h+ +++  ++++     +   d+l++t   l + l+k      + + v++D+vD++  a+   ++dril+++ 
  MMETSP1137-20121227|9234_1 138 RPRAIVLVPTRELALQVHEVGRSICRQVRLS--VSVIHGGVPEGPQRKIF----DKPVDLLVATPGRLLQLLQKGAvylGDVRQVVIDEVDTMFEAGfgDELDRILRITT 241
                 67999*******************9976655..5778****998887655....45789*****87666665554442238999**********9953379999999976 PP

  == domain 2    score: 3.3 bits;  conditional E-value: 0.0067
   TIGR01054 155 rvvayhsklstkekkevkeriengdfdilittsa 188
                  +  yh+ ++++ + +  +r+++g++ +l+tt  
  MMETSP1137-20121227|9234_1 357 ATANYHGAVPANMRADNFKRFREGEAAVLVTTDV 390
                 3355677777777777777777777777776643 PP

>> TIGR00643  recG: ATP-dependent DNA helicase RecG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.7   0.0    0.0056       2.1     265     365 ..     107     220 ..     101     224 .. 0.69
   2 !    7.0   0.0    0.0011      0.43     481     531 ..     354     404 ..     339     445 .. 0.76

  Alignments for each domain:
  == domain 1    score: 4.7 bits;  conditional E-value: 0.0056
   TIGR00643 265 VGsGKTvVavlallavies.....Gy.......qvalmaPTeiLAeQhyeklrelleplgievalLtgslkkkkkkelleeiasGeielvvGTha....llqe.kvefkeLalviiDE 365
                  GsGKT+  ++ +++ +++     G        ++ +++PT  LA Q  e  r++ +++ ++v+++ g + +  +++++++     ++l+v T      llq+ +v + +++ v+iDE
  MMETSP1137-20121227|9234_1 107 TGSGKTLTYLIPVMQRLKAdedfsGVrskprrpRAIVLVPTRELALQVHEVGRSICRQVRLSVSVIHGGVPEGPQRKIFDK----PVDLLVATPGrllqLLQKgAVYLGDVRQVVIDE 220
                 5788888777777777764222223222222225899********************************999888777665....457788775322224444245566777777777 PP

  == domain 2    score: 7.0 bits;  conditional E-value: 0.0011
   TIGR00643 481 pklnvallhgrlksdekeevleeFrekevdiLvaTtviEvGvdvPnatvmv 531
                   ++ a +hg ++++ + + +++Fre+e  +Lv+T v   G+d  +++ +v
  MMETSP1137-20121227|9234_1 354 HGYATANYHGAVPANMRADNFKRFREGEAAVLVTTDVAARGLDNLDVAHVV 404
                 56777889*****************************99998866655555 PP

>> TIGR00595  priA: primosomal protein N'
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.8   0.0    0.0049       1.8       5      71 ..     106     187 ..     102     193 .. 0.68
   2 !    5.2   0.0    0.0037       1.4     305     351 ..     371     415 ..     357     435 .. 0.82

  Alignments for each domain:
  == domain 1    score: 4.8 bits;  conditional E-value: 0.0049
   TIGR00595   5 vtGSGKtEvylkviekvla............kgksvlvLvPEiaLtaqll...krlkerfgsevavlhsklsasekkqawrk 71 
                  tGSGKt  yl  + ++l+            +   ++vLvP   L+ q+    + + ++   +v v+h +++++ +++++ k
  MMETSP1137-20121227|9234_1 106 QTGSGKTLTYLIPVMQRLKadedfsgvrskpRRPRAIVLVPTRELALQVHevgRSICRQVRLSVSVIHGGVPEGPQRKIFDK 187
                 69********988888876222222222211233699***977777776522256778888899999999998888877765 PP

  == domain 2    score: 5.2 bits;  conditional E-value: 0.0037
   TIGR00595 305 ealleqfaagkidiliGtqmiaKGldfpkvtlvgvlsaDsglklpdf 351
                 ++  ++f++g++ +l+ t + a+Gld   + ++ v++ D   + +d+
  MMETSP1137-20121227|9234_1 371 ADNFKRFREGEAAVLVTTDVAARGLDN--LDVAHVVQFDFPKNAADY 415
                 67789*******************985..555667777776666665 PP

>> TIGR04095  dnd_restrict_1: DNA phosphorothioation system restriction enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   0.0    0.0067       2.5      28      68 ..     102     152 ..      84     159 .. 0.71
   2 ?    4.4   0.0    0.0086       3.2     310     384 ..     352     426 ..     327     447 .. 0.87

  Alignments for each domain:
  == domain 1    score: 4.8 bits;  conditional E-value: 0.0067
   TIGR04095  28 ilkmatGtGktltaLalvskl..........aekikslvvvvvvPykhLve 68 
                 +l   tG+Gktlt L+ v++             k ++   +v+vP ++L+ 
  MMETSP1137-20121227|9234_1 102 VLGAQTGSGKTLTYLIPVMQRlkadedfsgvRSKPRRPRAIVLVPTRELAL 152
                 56778**********988887566555555544555555666666666665 PP

  == domain 2    score: 4.4 bits;  conditional E-value: 0.0086
   TIGR04095 310 eelglrvktftaeeskeeReellkqfesgelqalvairCLDeGvDvPairtayiLasssnPrqFiqRRGRvLRks 384
                  e+g+  +++  + +++ R++  k+f +ge  +lv+      G+D  ++ + +     +n  +++ R GR  R  
  MMETSP1137-20121227|9234_1 352 VEHGYATANYHGAVPANMRADNFKRFREGEAAVLVTTDVAARGLDNLDVAHVVQFDFPKNAADYLHRCGRTARAG 426
                 688999***************************************99999999999**************98863 PP

>> TIGR00631  uvrb: excinuclease ABC subunit B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.0      0.15        55      28      46 ..      97     115 ..      82     125 .. 0.71
   2 ?    8.4   0.0   0.00032      0.12     462     558 ..     350     442 ..     330     455 .. 0.82

  Alignments for each domain:
  == domain 1    score: -0.4 bits;  conditional E-value: 0.15
   TIGR00631  28 gekeqvLlGvtGsGktfti 46 
                 g +++vL   tGsGkt+t 
  MMETSP1137-20121227|9234_1  97 GGADVVLGAQTGSGKTLTY 115
                 4456777778******995 PP

  == domain 2    score: 8.4 bits;  conditional E-value: 0.00032
   TIGR00631 462 ylkelgikvkylhseidtlerveiirdLrkgefdvlvGinLLreGlDlPevslvailDadkeGflrsersLiqtiGraarn.veGkvilyadkitesm 558
                  l e+g  ++  h  + +  r++  + +r+ge  vlv  ++   GlD  +v+ v  +D     f ++ +  +  +Gr ar   +G+v+    k  +++
  MMETSP1137-20121227|9234_1 350 TLVEHGYATANYHGAVPANMRADNFKRFREGEAAVLVTTDVAARGLDNLDVAHVVQFD-----FPKNAADYLHRCGRTARAgKSGTVYSLVTKHDTEL 442
                 578899999999*******************************************999.....78888999999999999724577765555555555 PP

>> TIGR01407  dinG_rel: putative DnaQ family exonuclease/DinG family helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   0.0   0.00024      0.09     265     288 ..      99     122 ..      89     129 .. 0.82

  Alignments for each domain:
  == domain 1    score: 8.8 bits;  conditional E-value: 0.00024
   TIGR01407 265 ekslIeAatGtGKtlgYLLpalyl 288
                  ++++ A tG+GKtl+YL+p++  
  MMETSP1137-20121227|9234_1  99 ADVVLGAQTGSGKTLTYLIPVMQR 122
                 678899**************9765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (544 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        98  (0.0238908); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                        23  (0.00560702); expected 4.1 (0.001)
Passed Fwd filter:                        11  (0.00268162); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.56u 0.17s 00:00:00.73 Elapsed: 00:00:00.89
# Mc/sec: 806.76
//
Query:       MMETSP1137-20121227|9235_1  [L=180]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (180 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        89  (0.0216967); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.17s 00:00:00.35 Elapsed: 00:00:00.41
# Mc/sec: 579.46
//
Query:       MMETSP1137-20121227|9239_1  [L=210]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (210 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        66  (0.0160897); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.14s 00:00:00.33 Elapsed: 00:00:00.32
# Mc/sec: 866.18
//
Query:       MMETSP1137-20121227|9241_1  [L=66]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (66 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        14  (0.00341297); expected 82.0 (0.02)
Passed bias filter:                       14  (0.00341297); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.26
# Mc/sec: 335.05
//
Query:       MMETSP1137-20121227|9242_1  [L=72]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       135  (0.0329108); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.19s 00:00:00.32 Elapsed: 00:00:00.44
# Mc/sec: 215.98
//
Query:       MMETSP1137-20121227|9243_1  [L=187]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (187 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        64  (0.0156021); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.16s 00:00:00.36 Elapsed: 00:00:00.28
# Mc/sec: 851.10
//
Query:       MMETSP1137-20121227|9244_1  [L=416]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   2.9e-111  369.7   0.0   3.5e-111  369.5   0.0    1.0  1  TIGR03376 glycerol3P_DH: glycerol-3-phosphate dehydrogenase (NAD(+))


Domain annotation for each model (and alignments):
>> TIGR03376  glycerol3P_DH: glycerol-3-phosphate dehydrogenase (NAD(+))
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  369.5   0.0  8.5e-115  3.5e-111       1     340 [.      14     350 ..      14     352 .. 0.97

  Alignments for each domain:
  == domain 1    score: 369.5 bits;  conditional E-value: 8.5e-115
   TIGR03376   1 kvavvGsGnwGtaiAkivaenakalpelfeekvkmwvfeekie.gkkltevineehenvkyLpgiklpenlvavpdleeaakdadilvfviPhqflek.ilkqlkgkvkkkaraisclkGlevskdgvkllsdiieeel.giacgvlsGanlAnevAkekfsettvaykepkdfdvdaevlkalferpyFrvsvvedvagveiagalknvvAiaaGfveGlelgdnakaAvlrlGllemikfaklffeesevtlveesaGvaDlittClggRnvkvaealaktgksleelekellngqklqGvatakeveellkkknleeefPlfeavykilyeelkikklie 340
                 +v++vG G+wGtaiA +vaen++++p+ + ++v+mwv +e++  g  l+  in++h n kyLpg++lp+n+va+pdle aa++a +lv v+P  +l++ il +l  +  ++ ra+s++kGl  +  +  l+s+ +e+el g+ ++vl+Gan+A+ev  ++f+e+t+++++p    +    ++ +f+ + Fr++vv d agve++galkn+vA++aGf++Gl++g n+kaA++r+Gl em +f ++ff  ++ ++++es+Gva+li + +ggR +kva a+++tgks ++le ell gqklq ++  k+v   lkk+++e++fPlf+++y+i ye+ + +++++
  MMETSP1137-20121227|9244_1  14 RVCIVGGGSWGTAIATVVAENCSRHPQ-LLSRVTMWVHDEEMPaGGTLASSINASHYNQKYLPGVRLPDNVVAEPDLERAAHGATLLVLVVPVEYLSRgILVRLLENAAPNCRAVSLIKGLLFEDGKPALISKWVEKELqGMDVSVLMGANIASEVGAGQFCEATLGCNDP----KAGPIWQLVFNLERFRINVVMDAAGVELCGALKNIVALGAGFCDGLGYGANTKAAIVRIGLEEMMRFCRIFFRVDT-STFFESCGVAELIASAYGGRTRKVASAFVTTGKSWQQLEVELLGGQKLQDMQRFKDVMAALKKHGVEDKFPLFSKIYRIAYENAPCEEIVK 350
                 69*************************.6789**********9899**************************************************6449************************99*************99*****************************6....8999********************************************************************9877.899**********************************************************************************999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (416 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       243  (0.0592394); expected 82.0 (0.02)
Passed bias filter:                      199  (0.0485129); expected 82.0 (0.02)
Passed Vit filter:                        22  (0.00536324); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.18s 00:00:00.55 Elapsed: 00:00:00.41
# Mc/sec: 1339.21
//
Query:       MMETSP1137-20121227|9245_1  [L=416]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.9e-10   38.5  18.0    1.7e-09   35.3   1.7    2.5  2  TIGR00950 2A78: carboxylate/amino acid/amine transporter


Domain annotation for each model (and alignments):
>> TIGR00950  2A78: carboxylate/amino acid/amine transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.3   1.7   4.1e-13   1.7e-09      18     121 ..      64     171 ..      29     223 .. 0.82
   2 !    8.6   5.4     6e-05      0.25     165     259 ..     261     365 ..     244     369 .. 0.67

  Alignments for each domain:
  == domain 1    score: 35.3 bits;  conditional E-value: 4.1e-13
   TIGR00950  18 lyfavlrrlifallllLpllrlr.....nslkrllrllllgalqlgvfyvllflavkkltvaiaalllvlaPlyvtllsdllekervrkkkllAavlalaGivlllsdg 121
                 l+f++ r l++  +l  + ++++     + + +ll+l+ lg+l  + f++++ + ++ + +  aal++ + P+ ++ l +ll++er++ +kl++a+la +G++l+  + 
  MMETSP1137-20121227|9245_1  64 LAFSAARELFATPILWVWAVLAEgplqfPRRIDLLSLVALGLLL-AGFQLCFAFGIQMTDAQSAALFQCIEPTTAAFLARLLRTERLSALKLISALLAGLGVALIELNH 171
                 35666677777777777766666777655555666666666655.559*****************************************************99985433 PP

  == domain 2    score: 8.6 bits;  conditional E-value: 6e-05
   TIGR00950 165 vvlliGallllpfalllgpnlqalpats....lqwlallyLgligtllayflynkglkevdasaasilalleplvallLglli......lgetlslvqliggali 259
                 vv +++a+ll++      p+  a +       l++ +++y +++ ++ +y l + +   +dasa+++++ ++p+  llL+l++         ++ ++ l+++a++
  MMETSP1137-20121227|9245_1 261 VVTFCAAALLTVWHGERKPPISAASMHAllqpLSLMTIAYAVVFTSCFGYTLRAWANMRLDASALVLYNAAQPPLTLLLSLALglapsfGFAEAAGTMLVIAAMV 365
                 55555555555544444444433332221111566789999***************************************9872111112234455555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (416 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       138  (0.0336421); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.14s 00:00:00.47 Elapsed: 00:00:00.44
# Mc/sec: 1247.90
//
Query:       MMETSP1137-20121227|9246_1  [L=321]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.5e-05   20.8   0.0     0.0013   16.8   0.0    2.2  2  TIGR00220 mscL: large conductance mechanosensitive channel protein


Domain annotation for each model (and alignments):
>> TIGR00220  mscL: large conductance mechanosensitive channel protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0   3.1e-07    0.0013       6      43 ..      67     104 ..      64     113 .. 0.90
   2 ?    1.4   0.0     0.019        78      73     109 ..     158     194 ..     140     202 .. 0.66

  Alignments for each domain:
  == domain 1    score: 16.8 bits;  conditional E-value: 3.1e-07
   TIGR00220   6 kefalrGnvvdlavgvviGgafgkivsslvadilapll 43 
                 +++ +  n  ++a +vviG +f ++v++l a+i+apl+
  MMETSP1137-20121227|9246_1  67 RDLLVGENTREFATAVVIGESFYSMVQALTAEIIAPLI 104
                 56667778999*************************97 PP

  == domain 2    score: 1.4 bits;  conditional E-value: 0.019
   TIGR00220  73 qavidfliiafaiflvikvinklrrkkkaeeeaaaea 109
                   v+ ++   ++++ + ++i+ + ++  + eeaa e 
  MMETSP1137-20121227|9246_1 158 DDVLTLIFTLLTLYWIFRLIDAFAKRPTKVEEAASEQ 194
                 4566666666778888888888866555555555543 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (321 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       103  (0.0251097); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.26u 0.17s 00:00:00.43 Elapsed: 00:00:00.39
# Mc/sec: 1086.37
//
Query:       MMETSP1137-20121227|9248_1  [L=435]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.5e-71  237.9   0.3    2.5e-71  237.9   0.2    1.6  2  TIGR03672 rpl4p_arch: 50S ribosomal protein L4P
    7.8e-09   33.0   3.6     0.0057   13.8   0.0    2.8  2  TIGR03953 rplD_bact: 50S ribosomal protein L4


Domain annotation for each model (and alignments):
>> TIGR03672  rpl4p_arch: 50S ribosomal protein L4P
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  237.9   0.2   1.2e-74   2.5e-71      13     249 ..      65     307 ..      51     309 .. 0.95
   2 ?   -2.1   0.3      0.22   4.5e+02      41      83 ..     387     430 ..     379     433 .. 0.63

  Alignments for each domain:
  == domain 1    score: 237.9 bits;  conditional E-value: 1.2e-74
   TIGR03672  13 veeielPevFeeevRkDlikravlaaqtarlqpkGadplaGkrtsaeslgsgrGvarvprlkess.....raarvpqavgGrkahpPkvekklvekiNkkEkklairsAiaatakkelvkaRgHvfeee.elpivveddleklkktkevkelleklglyddverakegkkiraGkgklRgRkYkepksvLivvsddeellkaarnlpGvdvvtvkelnvelLAPGtkpgRLtvftesaiekle 249
                  ++++lP vF  +vR+D+++++      +++qp+  +++aGk  sa s+g+gr v+r+pr+++++     ++a+ ++ +gGr   p k  +k+++k+N   +++a++sA+aa+a + lv aRgH++++  e+p+vv++ lek +kt  +++ll+k+g y+dv ++  +k++raGkgk+R+R++ +++++L+v +++e++++a+rn+pGv+++ v++ln  +LAPG++ gR  ++te a +kl+
  MMETSP1137-20121227|9248_1  65 SHSVKLPGVFLAPVRPDVVHQVHTGLAKNKRQPYCVNKYAGKSVSAASWGTGRAVSRIPRVQGGGthrsgQGAFGNMCRGGRMFAPTKQWRKWHQKVNITQRRYAVASALAASAVPALVMARGHKIDNLpEVPLVVSSALEKTSKTAAAVALLKKMGAYADVDKVVASKTMRAGKGKMRNRRFVQRRGPLVVYEKNEGITRAFRNIPGVELACVDSLNLLQLAPGGHLGRFCIWTEAAFKKLD 307
                 579*********************************************************99877676779999*********999999*******************************************************************************************************************************************************997 PP

  == domain 2    score: -2.1 bits;  conditional E-value: 0.22
   TIGR03672  41 arlqpkGadplaGkrtsaeslgsgrGvar.vprlkessraarvp 83 
                 +r  +k a  +  k++  es ++g+G ++ vp+ +++ +a ++ 
  MMETSP1137-20121227|9248_1 387 KRATEKQAADIKAKEKLRESRRAGKGPSKaVPKERREMKASFLK 430
                 44445555555556677778888888775477777777777665 PP

>> TIGR03953  rplD_bact: 50S ribosomal protein L4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   4.5   3.9e-06     0.008       7     102 ..      73     178 ..      69     244 .. 0.76
   2 !   13.8   0.0   2.8e-06    0.0057     127     172 ..     242     288 ..     204     308 .. 0.64

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 3.9e-06
   TIGR03953   7 vfgvevneqllhevvkaqlanrrq....gtaktktrseVsggg....kKpyrQKgtGrARqGsirsplfrgGGvvfGpkpr..dysqklnkKvrrlAlrsaLsekl 102
                 vf + v+ +++h+v +   +n+rq    +  + k+ s  s g+    +++ r  g G  R+G+     +  GG++f+p+++  +++qk+n  +rr A++saL++ +
  MMETSP1137-20121227|9248_1  73 VFLAPVRPDVVHQVHTGLAKNKRQpycvNKYAGKSVSAASWGTgravSRIPRVQGGGTHRSGQGAFGNMCRGGRMFAPTKQwrKWHQKVNITQRRYAVASALAASA 178
                 5666677777777777666667762222233344444444443122235567789***********************997769******************9765 PP

  == domain 2    score: 13.8 bits;  conditional E-value: 2.8e-06
   TIGR03953 127 lkklgl.ekkvLivvdekdenlelsarNlpkvkvleveglnvydllk 172
                 +++  + +++  +vv ek+e + +++rN+p+v+++ v++ln ++l  
  MMETSP1137-20121227|9248_1 242 MRNRRFvQRRGPLVVYEKNEGITRAFRNIPGVELACVDSLNLLQLAP 288
                 44444444444456667*************************99975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (435 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       101  (0.0246221); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.37u 0.15s 00:00:00.52 Elapsed: 00:00:00.34
# Mc/sec: 1688.68
//
Query:       MMETSP1137-20121227|9250_1  [L=322]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (322 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        44  (0.0107265); expected 82.0 (0.02)
Passed bias filter:                       38  (0.00926377); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.16s 00:00:00.38 Elapsed: 00:00:00.35
# Mc/sec: 1214.30
//
Query:       MMETSP1137-20121227|9251_1  [L=284]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (284 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       123  (0.0299854); expected 82.0 (0.02)
Passed bias filter:                       98  (0.0238908); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.17s 00:00:00.40 Elapsed: 00:00:00.41
# Mc/sec: 914.27
//
Query:       MMETSP1137-20121227|9252_1  [L=39]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (39 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        41  (0.00999512); expected 82.0 (0.02)
Passed bias filter:                       37  (0.00901999); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.17s 00:00:00.27 Elapsed: 00:00:00.36
# Mc/sec: 142.99
//
Query:       MMETSP1137-20121227|9253_1  [L=75]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (75 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        71  (0.0173086); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.23
# Mc/sec: 430.40
//
Query:       MMETSP1137-20121227|9254_1  [L=789]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (789 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       183  (0.0446124); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.50u 0.16s 00:00:00.66 Elapsed: 00:00:00.56
# Mc/sec: 1827.01
//
Query:       MMETSP1137-20121227|9255_1  [L=1355]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1355 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        95  (0.0231594); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.76u 0.14s 00:00:00.90 Elapsed: 00:00:00.98
# Mc/sec: 1824.95
//
Query:       MMETSP1137-20121227|9256_1  [L=43]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (43 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        23  (0.00560702); expected 82.0 (0.02)
Passed bias filter:                       19  (0.00463189); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.11s 00:00:00.22 Elapsed: 00:00:00.28
# Mc/sec: 202.70
//
Query:       MMETSP1137-20121227|9257_1  [L=322]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.025   12.0   0.0      0.046   11.1   0.0    1.4  1  TIGR03223 Phn_opern_protn: putative phosphonate metabolism protein


Domain annotation for each model (and alignments):
>> TIGR03223  Phn_opern_protn: putative phosphonate metabolism protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   1.1e-05     0.046      61     130 ..     248     318 ..     230     321 .. 0.90

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 1.1e-05
   TIGR03223  61 TLkaPfrLaegv.eeaellaavaalaatrapvalsglkvallggFlAlvpaeeldaLqaLAaacvreldef 130
                 T+ a f ++e + +++el+ a a++a  ++ v++++l++ + +g + l +a   ++ + +Aa++  +ld+f
  MMETSP1137-20121227|9257_1 248 TVLAGFTVRELTgSTEELRGASAEIAMYVNGVPVPELRLYTADGEVGLALAVSPEECDSIAAEINAALDRF 318
                 67778888886625689****************************************************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (322 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        89  (0.0216967); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.26u 0.14s 00:00:00.40 Elapsed: 00:00:00.75
# Mc/sec: 566.67
//
Query:       MMETSP1137-20121227|9259_1  [L=257]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (257 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       102  (0.0248659); expected 82.0 (0.02)
Passed bias filter:                      101  (0.0246221); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.23s 00:00:00.37 Elapsed: 00:00:00.40
# Mc/sec: 848.03
//
Query:       MMETSP1137-20121227|9260_1  [L=175]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.8e-05   20.3   0.1      0.041   11.2   0.1    2.1  2  TIGR00646 MG010: DNA primase-like protein
     0.0089   14.1   0.3        1.4    7.1   0.0    2.8  2  TIGR03798 ocin_TIGR03798: nif11-like leader peptide domain
  ------ inclusion threshold ------
      0.032   12.1   0.5       0.12   10.2   0.4    1.8  1  TIGR01453 grpIintron_endo: group I intron endonuclease
       0.44    8.5   4.9       0.18    9.8   0.1    2.6  3  TIGR01639 P_fal_TIGR01639: Plasmodium falciparum uncharacterized domain TIGR01639


Domain annotation for each model (and alignments):
>> TIGR00646  MG010: DNA primase-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.1   0.0   0.00075      0.77     152     196 ..      23      67 ..      15      71 .. 0.89
   2 !   11.2   0.1     4e-05     0.041     152     183 ..      96     127 ..      87     142 .. 0.86

  Alignments for each domain:
  == domain 1    score: 7.1 bits;  conditional E-value: 0.00075
   TIGR00646 152 kkikkvvlcldndlagkvaaknlkeilkkagfivkvvelkakvkd 196
                 + i+  +  +d d +g    ++lk  ++  gf vk  el+  + d
  MMETSP1137-20121227|9260_1  23 EEIREAFNLFDTDHSGSIDYRELKAAMRALGFEVKKEELRKMITD 67 
                 578888999**************************9999988877 PP

  == domain 2    score: 11.2 bits;  conditional E-value: 4e-05
   TIGR00646 152 kkikkvvlcldndlagkvaaknlkeilkkagf 183
                 + i kv+  +d+d +gk + knlk++ k+ g 
  MMETSP1137-20121227|9260_1  96 EEILKVFKLFDDDSTGKISFKNLKRVAKELGE 127
                 6799**********************999875 PP

>> TIGR03798  ocin_TIGR03798: nif11-like leader peptide domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.1   0.0    0.0014       1.4      34      53 ..      47      66 ..      40      76 .. 0.81
   2 ?    4.0   0.0     0.013        13      34      54 ..     120     146 ..     116     158 .. 0.68

  Alignments for each domain:
  == domain 1    score: 7.1 bits;  conditional E-value: 0.0014
   TIGR03798 34 aiakeaGFefteedleeaqa 53
                a+ ++ GFe+++e+l + ++
  MMETSP1137-20121227|9260_1 47 AAMRALGFEVKKEELRKMIT 66
                7899***********88755 PP

  == domain 2    score: 4.0 bits;  conditional E-value: 0.013
   TIGR03798  34 aiakeaGFefteedleeaqa......s 54 
                 + ake G ++tee+l+  +       +
  MMETSP1137-20121227|9260_1 120 RVAKELGENMTEEELQDMIDqadrdgD 146
                 578999999999999665444455555 PP

>> TIGR01453  grpIintron_endo: group I intron endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.4   0.00012      0.12     147     193 ..      80     128 ..       9     142 .. 0.66

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 0.00012
   TIGR01453 147 khseetkkkiskkeaks..akkvnvydkenkllveFdsiaeaarelkis 193
                 ++ e    k+ +k +k+   k ++++d+++   ++F++++++a+el+ +
  MMETSP1137-20121227|9260_1  80 EFLEMMTGKMGEKDTKEeiLKVFKLFDDDSTGKISFKNLKRVAKELGEN 128
                 33344444555777777767788999999999999**********9643 PP

>> TIGR01639  P_fal_TIGR01639: Plasmodium falciparum uncharacterized domain TIGR01639
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.1      0.36   3.7e+02      12      20 ..      58      66 ..      55      71 .. 0.76
   2 ?   -3.2   0.0       1.9     2e+03      11      15 ..      94      98 ..      91     103 .. 0.63
   3 ?    9.8   0.1   0.00017      0.18       4      21 ..     123     140 ..     122     144 .. 0.86

  Alignments for each domain:
  == domain 1    score: -0.8 bits;  conditional E-value: 0.36
   TIGR01639 12 kEelnelin 20
                kEel ++i 
  MMETSP1137-20121227|9260_1 58 KEELRKMIT 66
                788888886 PP

  == domain 2    score: -3.2 bits;  conditional E-value: 1.9
   TIGR01639 11 tkEel 15
                tkEe+
  MMETSP1137-20121227|9260_1 94 TKEEI 98
                66776 PP

  == domain 3    score: 9.8 bits;  conditional E-value: 0.00017
   TIGR01639   4 ndlskkltkEelnelins 21 
                 ++l  ++t+Eel+++i++
  MMETSP1137-20121227|9260_1 123 KELGENMTEEELQDMIDQ 140
                 578899**********97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (175 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       217  (0.052901); expected 82.0 (0.02)
Passed bias filter:                      175  (0.0426621); expected 82.0 (0.02)
Passed Vit filter:                        18  (0.0043881); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.15u 0.20s 00:00:00.35 Elapsed: 00:00:00.36
# Mc/sec: 641.61
//
Query:       MMETSP1137-20121227|9261_1  [L=850]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0031   14.9   0.1     0.0031   14.9   0.1    2.0  2  TIGR01661 ELAV_HUD_SF: ELAV/HuD family splicing factor
     0.0035   14.8   0.0     0.0035   14.8   0.0    2.4  3  TIGR01659 sex-lethal: sex-lethal family splicing factor


Domain annotation for each model (and alignments):
>> TIGR01661  ELAV_HUD_SF: ELAV/HuD family splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.1   1.5e-06    0.0031     195     345 ..     125     288 ..      90     295 .. 0.56
   2 ?   -4.5   1.8       1.3   2.6e+03     200     258 ..     356     384 ..     304     404 .. 0.42

  Alignments for each domain:
  == domain 1    score: 14.9 bits;  conditional E-value: 1.5e-06
   TIGR01661 195 prstiltaaaiaplhkaaakfrlsaldflavl.akrlqqhavaqqaaaqrasplaadgavaglaagaqiaa..........sdgagycifvynlspd.tdeavl...qlfgpfGavqsvkiirdlttnkc..kGygfvsmtnydeaalailslnGytlgnrvlqvsfk 345
                 +r  + +aaa a +   a +++ +++   a   +     +av+++ a++     +a g++a  a++    a          +      ifv  lsp  ++e +l     fg++G +  v++    +t        + ++ +  dea +ail+++G  l +r+l+ +f 
  MMETSP1137-20121227|9261_1 125 SRQEVQQAAAAARATIPACAVSSNNGGAAANSaVCSTGGGAVSSTPASSGGPACSASGTAARPAVK----AplradgrdvrAAQQRNAIFVTGLSPRiAKEEILrrnEYFGQYGKILRVQLNPPSSTSSGppSNSCTITYATRDEAEQAILAVDGVALDGRTLKATFA 288
                 222222333333333333333333333222221333333444333333222222222222222222....122234554443446789********8457888866669**********998777666541134556777889********************99886 PP

  == domain 2    score: -4.5 bits;  conditional E-value: 1.3
   TIGR01661 200 ltaaaiaplhkaaakfrlsaldflavlakrlqqhavaqqaaaqrasplaadgavaglaa 258
                 ++                             +++a a++a    a p+aa +a+a++a+
  MMETSP1137-20121227|9261_1 356 AG---------------------------SARTEACASDAN---AQPPAALSAAAAMAS 384
                 11...........................111111111111...122222222222222 PP

>> TIGR01659  sex-lethal: sex-lethal family splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.3   0.4       1.1   2.3e+03      78     101 ..     145     168 ..     122     175 .. 0.44
   2 !   14.8   0.0   1.7e-06    0.0035     195     264 ..     208     282 ..     193     292 .. 0.84
   3 ?   -6.8   3.7         2   4.1e+03       7      65 ..     648     702 ..     585     764 .. 0.59

  Alignments for each domain:
  == domain 1    score: -4.3 bits;  conditional E-value: 1.1
   TIGR01659  78 vgnlanaastnslnslgsggsddn 101
                 v+     a++ns  +  +gg+ + 
  MMETSP1137-20121227|9261_1 145 VSSNNGGAAANSAVCSTGGGAVSS 168
                 222233345555555555555554 PP

  == domain 2    score: 14.8 bits;  conditional E-value: 1.7e-06
   TIGR01659 195 nlyvtnlprtitddql...dtifgkygsi..vqknilrdkltgkprgvafvrfnkreeaqeaisalnnvipeggs 264
                  ++vt l+  i+ +++   +  fg+yg+i  vq n      +g p     + +  r+ea++ai a++ v  +g +
  MMETSP1137-20121227|9261_1 208 AIFVTGLSPRIAKEEIlrrNEYFGQYGKIlrVQLNPPSSTSSGPPSNSCTITYATRDEAEQAILAVDGVALDGRT 282
                 5899**9988888765355789******96668888889999*************************99988876 PP

  == domain 3    score: -6.8 bits;  conditional E-value: 2
   TIGR01659   7 nggyapygynnkssggrmfg.mshslpsgmsryafspedtdfss.ypsssrsrrrgyndfs 65 
                 ngg  p g n    gg   g +s s ps     af  + +  s+  p++  + + + +   
  MMETSP1137-20121227|9261_1 648 NGGGVP-GLNVLGDGGSLTGsLSSSPPSSE---AFLSQLSSGSNlLPGT--QLSSQLQSLL 702
                 344333.45555555555542344444433...5554444444435555..3333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (850 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       357  (0.0870307); expected 82.0 (0.02)
Passed bias filter:                      201  (0.0490005); expected 82.0 (0.02)
Passed Vit filter:                        30  (0.00731351); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.65u 0.31s 00:00:00.96 Elapsed: 00:00:00.71
# Mc/sec: 1580.15
//
Query:       MMETSP1137-20121227|9262_1  [L=367]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   3.9e-101  336.4   1.2   4.8e-101  336.1   0.9    1.1  1  TIGR01146 ATPsyn_F1gamma: ATP synthase F1, gamma subunit
      6e-27   92.5   1.5      3e-17   60.7   0.7    2.1  2  TIGR03323 alt_F1F0_F1_gam: alternate F1F0 ATPase, F1 subunit gamma
     0.0013   14.7   0.1     0.0018   14.3   0.1    1.1  1  TIGR03502 lipase_Pla1_cef: extracellular lipase, Pla-1/cef family
  ------ inclusion threshold ------
       0.11    8.8   5.8      0.026   10.8   1.8    1.5  2  TIGR03185 DNA_S_dndD: DNA sulfur modification protein DndD


Domain annotation for each model (and alignments):
>> TIGR01146  ATPsyn_F1gamma: ATP synthase F1, gamma subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  336.1   0.9  4.6e-104  4.8e-101       2     286 .]      55     367 .]      54     367 .] 0.97

  Alignments for each domain:
  == domain 1    score: 336.1 bits;  conditional E-value: 4.6e-104
   TIGR01146   2 aslkeirkrikSvkntkkITkAmklVaasklrraqerveaarpyaeklaevlknlaaklke..vdhplllkkrevkkvlllvvtsdrGLcGgynsnvlkkveeklkelkeegkevklvviGkkgkeffkrreiniaasvtglseqptfeeaqeiadklleafesgevdkveivynkfvsllsqeptvkkllplseke.eek...........................kleeklefepdeeeilesLlprylesqiyrallesaasElaaRmtAMdnAtdNAkdlikkltlsyNraRQaaITqElieivaGasal 286
                 a+++e+r+r+ Svknt+kIT+Am+lVaa+k+rraqe+   +rp++e+l+++l+ l ++l++  +d p ll+ re+kkv+llv+t+drGLcG+yn+  +kk+e+++kel+ +g+ev+l+++G+kg ++fkrr+ ++ ++v+   ++pt+e+a+eia++ll+ + +ge+d+ve++y+ f+s++s++p+v++++pl  ++ e++                           +++ +++fe++++++l++Llp yl+ q++r l+es+asEla+Rm+AM++AtdNAk+l  +l+ + NraRQa+ITqEl+eivaGa+al
  MMETSP1137-20121227|9262_1  55 ANIRELRDRVGSVKNTRKITSAMRLVAAAKVRRAQEACLRSRPFSETLERILGGLLQRLSTenLDIP-LLEAREAKKVGLLVITGDRGLCGSYNAAAIKKTEARIKELTSQGVEVELILVGNKGGSYFKRRDTPVRKAVQC-GQAPTAEQASEIASELLSSYYAGELDRVELIYTSFISMISSKPSVRTIIPLAPQGiEMEgdeifkmttkdgelsinrekreasapqEFAADMIFEQEPSQLLNALLPLYLNGQLLRTLQESVASELASRMSAMQSATDNAKELQGNLERQMNRARQAKITQELMEIVAGADAL 367
                 89*****************************************************999987779999.*****************************************************************99988875.9*************************************************999998444556699999******************9***********************************************************************************997 PP

>> TIGR03323  alt_F1F0_F1_gam: alternate F1F0 ATPase, F1 subunit gamma
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.4   0.0   5.2e-11   5.3e-08       1     184 [.      60     244 ..      60     250 .. 0.77
   2 !   60.7   0.7   2.9e-20     3e-17     208     285 .]     290     367 .]     278     367 .] 0.96

  Alignments for each domain:
  == domain 1    score: 30.4 bits;  conditional E-value: 5.2e-11
   TIGR03323   1 lrrkiesaadLksvvrtmkalaavsirqYedavraLddYyetveLGLavvlreeelaaasasgkskkesgktgaivlGsDqGlvGqfnevllefvveela...elkgekevwavGervasrledsglkieelfalPnsvkaitalvsellievekvreqeelaelllffnrkesgasYeptsqrlLP 184
                 lr ++ s ++ + +  +m+ +aa+++r+ ++a      + et+e  L  +l++ + ++   +  + +e++k+g +v+  D+Gl+G +n + +++   +++   ++  e e+  vG++  s+ + + ++++++ +  ++    ++  se+  e+      +el ++ l + +  s  s +p    ++P
  MMETSP1137-20121227|9262_1  60 LRDRVGSVKNTRKITSAMRLVAAAKVRRAQEACLRSRPFSETLERILGGLLQRLSTENLDIPLLEAREAKKVGLLVITGDRGLCGSYNAAAIKKTEARIKeltSQGVEVELILVGNKGGSYFKRRDTPVRKAVQCGQA--PTAEQASEIASELLSSYYAGELDRVELIYTSFISMISSKPSVRTIIP 244
                 67889999999**********************999**********************99999999999*******************998877766555221566688999*****999999999999998776543..22233333434433444445555556655555555555555555555 PP

  == domain 2    score: 60.7 bits;  conditional E-value: 2.9e-20
   TIGR03323 208 gekeetlsalireylfvsLfraaaesLasenasrlaamqraeknidelldeLnrrfhrlrqsaideeLfdvvsGfeaL 285
                 +e+ ++l+al+  yl   L r+  es+ase asr++amq a  n  el+ +L+r+ +r rq+ i+ eL+++v+G +aL
  MMETSP1137-20121227|9262_1 290 QEPSQLLNALLPLYLNGQLLRTLQESVASELASRMSAMQSATDNAKELQGNLERQMNRARQAKITQELMEIVAGADAL 367
                 67899*********************************************************************9998 PP

>> TIGR03502  lipase_Pla1_cef: extracellular lipase, Pla-1/cef family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.1   1.8e-06    0.0018     235     360 ..     216     341 ..     198     365 .. 0.80

  Alignments for each domain:
  == domain 1    score: 14.3 bits;  conditional E-value: 1.8e-06
   TIGR03502 235 aagvdkeeiiYsslfttqSvgdvleavkkltasgvatavntlakvptqtgvnvaaaailgltvpedfsaalaevasaanvtkgkvklPyYletpsaenlqalvspslaklwkAlcdsaval..ilgal 360
                 a+++d+ e+iY+s +++ S   ++ ++  l  +g+  +  ++ k++t++g    +   ++ ++p++f+a+++  +++   +  +  lP Yl+      lq++v  +la++ +A+     ++  ++g+l
  MMETSP1137-20121227|9262_1 216 AGELDRVELIYTSFISMISSKPSVRTIIPLAPQGIEMEGDEIFKMTTKDGELSINREKREASAPQEFAADMI--FEQEPSQLLNALLPLYLNGQLLRTLQESVASELASRMSAMQSATDNAkeLQGNL 341
                 5678999*******************************9999999999877777676899999****99998..5555566666789*****************99***9999976655522233333 PP

>> TIGR03185  DNA_S_dndD: DNA sulfur modification protein DndD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0      0.31   3.1e+02     232     281 ..     151     201 ..     147     211 .. 0.66
   2 ?   10.8   1.8   2.6e-05     0.026     255     358 ..     262     362 ..     251     366 .. 0.82

  Alignments for each domain:
  == domain 1    score: -2.7 bits;  conditional E-value: 0.31
   TIGR03185 232 iaalrkeleeaerklesle.kkfeseGgelaeereelerqqkeleaklkav 281
                 i++ + +++e+  +  ++e   + ++Gg+ +++r++  r+  ++ ++  a 
  MMETSP1137-20121227|9262_1 151 IKKTEARIKELTSQGVEVElILVGNKGGSYFKRRDTPVRKAVQCGQAPTAE 201
                 555566666665555444413466889999999999999888887765544 PP

  == domain 2    score: 10.8 bits;  conditional E-value: 2.6e-05
   TIGR03185 255 seGgelaeereelerqqkeleaklkavraelrelaadllPLlliknllssvkaqlrkeeqakqnqliqevleerdkellelLpklalpaelvkelaaelaelak 358
                 ++ gel  +re+ e    +  a+    ++e  +l++ llPL+l+  ll  +++ ++ e  ++ ++ +q++ ++ +kel+  L+  +++    +++ +el+e+++
  MMETSP1137-20121227|9262_1 262 TKDGELSINREKREASAPQEFAADMIFEQEPSQLLNALLPLYLNGQLLRTLQESVASELASRMSA-MQSA-TDNAKELQGNLER-QMNRARQAKITQELMEIVA 362
                 55577777888888888777788888899999***********************9988766554.4544.5778999999976.999999999*999999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (367 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       208  (0.050707); expected 82.0 (0.02)
Passed bias filter:                      126  (0.0307167); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.30u 0.21s 00:00:00.51 Elapsed: 00:00:00.36
# Mc/sec: 1345.56
//
Query:       MMETSP1137-20121227|9263_1  [L=43]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (43 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        46  (0.011214); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:00.45
# Mc/sec: 126.12
//
Query:       MMETSP1137-20121227|9264_1  [L=63]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (63 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        20  (0.00487567); expected 82.0 (0.02)
Passed bias filter:                       20  (0.00487567); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.13s 00:00:00.25 Elapsed: 00:00:00.27
# Mc/sec: 307.97
//
Query:       MMETSP1137-20121227|9265_1  [L=87]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (87 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        97  (0.023647); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.12s 00:00:00.26 Elapsed: 00:00:00.27
# Mc/sec: 425.30
//
Query:       MMETSP1137-20121227|9267_1  [L=124]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.9e-06   25.2   0.0    2.8e-06   24.7   0.0    1.2  1  TIGR00782 ccoP: cytochrome c oxidase, cbb3-type, subunit III
    3.1e-05   21.5   0.2     0.0004   17.9   0.1    2.0  1  TIGR03046 PS_II_psbV2: photosystem II cytochrome PsbV2
    0.00017   19.1   0.0     0.0019   15.7   0.0    2.0  2  TIGR03045 PS_II_C550: cytochrome c-550
     0.0094   13.8   0.4        2.1    6.2   0.2    2.2  2  TIGR02603 CxxCH_TIGR02603: putative heme-binding domain


Domain annotation for each model (and alignments):
>> TIGR00782  ccoP: cytochrome c oxidase, cbb3-type, subunit III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.7   0.0   2.7e-09   2.8e-06     205     279 ..      36     116 ..      23     121 .. 0.79

  Alignments for each domain:
  == domain 1    score: 24.7 bits;  conditional E-value: 2.7e-09
   TIGR00782 205 kGkelFadnCvsChgedgkGlqelgapnlt.ddvwlyG..gd.kktivttikkGrigvmPawk...krlseaqikalaayvh 279
                 + k +F++ C+sCh+  g+ +   g  +l+ + +   G   d  ++i  ++k+G+ g mP ++   + ls+++i+ l+ayv 
  MMETSP1137-20121227|9267_1  36 AAKVIFQKSCASCHAGGGNSVPFYGQADLSlASLKRNGylEDdGAKIGAIVKNGK-GIMPKFQegpQALSDEEIQDLTAYVL 116
                 45679***********999999999888873455554422333789999999997.89****999999************96 PP

>> TIGR03046  PS_II_psbV2: photosystem II cytochrome PsbV2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.1   3.9e-07    0.0004      47     101 ..      24      80 ..      16     123 .. 0.69

  Alignments for each domain:
  == domain 1    score: 17.9 bits;  conditional E-value: 3.9e-07
   TIGR03046  47 GelktftaedlteGkklfesncknchvGGatlp..nPkvslslkdlkGatPPrdtiq 101
                 G+  ++ a+  ++ k  f+++c  ch GG + +    +  lsl+ lk      d+ +
  MMETSP1137-20121227|9267_1  24 GDASSLVADSNSAAKVIFQKSCASCHAGGGNSVpfYGQADLSLASLKRNGYLEDDGA 80 
                 66677778888999*************998865223678899999987666666555 PP

>> TIGR03045  PS_II_C550: cytochrome c-550
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   1.8e-06    0.0019      49      70 ..      32      53 ..      18      74 .. 0.78
   2 ?    1.4   0.0     0.047        49     131     148 ..     102     119 ..      92     122 .. 0.87

  Alignments for each domain:
  == domain 1    score: 15.7 bits;  conditional E-value: 1.8e-06
   TIGR03045 49 eqvkkgkrlfnsaCatChvgGi 70
                +  +++k +f+++Ca+Ch+gG 
  MMETSP1137-20121227|9267_1 32 DSNSAAKVIFQKSCASCHAGGG 53
                55567899************95 PP

  == domain 2    score: 1.4 bits;  conditional E-value: 0.047
   TIGR03045 131 nLtdedLkliagyiLvqp 148
                  L+de+++ +++y+L ++
  MMETSP1137-20121227|9267_1 102 ALSDEEIQDLTAYVLERA 119
                 699***********9765 PP

>> TIGR02603  CxxCH_TIGR02603: putative heme-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.2   0.2    0.0021       2.1       6      25 ..      37      56 ..      31      77 .. 0.82
   2 !    6.1   0.0    0.0021       2.2     102     131 ..      84     115 ..      77     118 .. 0.77

  Alignments for each domain:
  == domain 1    score: 6.2 bits;  conditional E-value: 0.0021
   TIGR02603  6 GkavfakaCvvCHrvggeGv 25
                 k++f+k C+ CH  gg+ v
  MMETSP1137-20121227|9267_1 37 AKVIFQKSCASCHAGGGNSV 56
                58999********8776655 PP

  == domain 2    score: 6.1 bits;  conditional E-value: 0.0021
   TIGR02603 102 srealpvslMpegle..aglsdedladLvayL 131
                  + +    +Mp+ +e  ++lsde+++dL ay+
  MMETSP1137-20121227|9267_1  84 AIVKNGKGIMPKFQEgpQALSDEEIQDLTAYV 115
                 5556677789988774469************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (124 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       121  (0.0294978); expected 82.0 (0.02)
Passed bias filter:                      113  (0.0275475); expected 82.0 (0.02)
Passed Vit filter:                        20  (0.00487567); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.19u 0.15s 00:00:00.34 Elapsed: 00:00:00.31
# Mc/sec: 527.96
//
Query:       MMETSP1137-20121227|9268_1  [L=207]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (207 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        98  (0.0238908); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.15s 00:00:00.32 Elapsed: 00:00:00.32
# Mc/sec: 853.80
//
Query:       MMETSP1137-20121227|9270_1  [L=176]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.7e-06   24.8   0.0    4.7e-06   24.5   0.0    1.1  1  TIGR02933 nifM_nitrog: nitrogen fixation protein NifM


Domain annotation for each model (and alignments):
>> TIGR02933  nifM_nitrog: nitrogen fixation protein NifM
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.5   0.0   1.2e-09   4.7e-06     137     211 ..      32     109 ..       7     111 .. 0.86

  Alignments for each domain:
  == domain 1    score: 24.5 bits;  conditional E-value: 1.2e-09
   TIGR02933 137 dreavrerieallrrlrak...reafaelaerhseCPtalegGlLGwvsrGlLypeLdaaLfqlaegeLsavieselG 211
                  +e + + i+a + +++a+   +e fa+ a++ s+C +   gG LG  ++G + ++ ++       g +s v+ s+ G
  MMETSP1137-20121227|9270_1  32 SSEEAIKEIDAFAAKIKAEgctEEVFARYAQQRSDCGSFKSGGDLGVFGPGEMQAQFEQGCAATPVGTMSDVVLSDSG 109
                 44445567********986444799***********************************999999999999998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (176 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        64  (0.0156021); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.18u 0.14s 00:00:00.32 Elapsed: 00:00:00.35
# Mc/sec: 663.72
//
Query:       MMETSP1137-20121227|9273_1  [L=411]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (411 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        63  (0.0153584); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.09s 00:00:00.38 Elapsed: 00:00:00.50
# Mc/sec: 1084.95
//
Query:       MMETSP1137-20121227|9274_1  [L=361]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (361 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        67  (0.0163335); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.12s 00:00:00.38 Elapsed: 00:00:00.51
# Mc/sec: 934.28
//
Query:       MMETSP1137-20121227|9275_1  [L=504]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (504 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       105  (0.0255973); expected 82.0 (0.02)
Passed bias filter:                       99  (0.0241346); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.16s 00:00:00.53 Elapsed: 00:00:00.62
# Mc/sec: 1072.94
//
Query:       MMETSP1137-20121227|9276_1  [L=176]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (176 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        52  (0.0126767); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.17s 00:00:00.33 Elapsed: 00:00:00.30
# Mc/sec: 774.34
//
Query:       MMETSP1137-20121227|9277_1  [L=42]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (42 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        23  (0.00560702); expected 82.0 (0.02)
Passed bias filter:                       21  (0.00511945); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.27
# Mc/sec: 205.32
//
Query:       MMETSP1137-20121227|9280_1  [L=252]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.013   12.4   0.0       0.11    9.3   0.0    1.9  2  TIGR03535 DapD_actino: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase


Domain annotation for each model (and alignments):
>> TIGR03535  DapD_actino: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   0.0   2.8e-05      0.11     174     218 ..      63     108 ..      57     143 .. 0.78
   2 ?    1.0   0.0    0.0092        38      45      91 ..     192     238 ..     163     246 .. 0.80

  Alignments for each domain:
  == domain 1    score: 9.3 bits;  conditional E-value: 2.8e-05
   TIGR03535 174 vmheGfvnfnaGtlGa.smveGrisaGvvvgdGsdiGGGasimGtl 218
                 v  eGf+ +na + G+ s+v   is+Gv ++   d+G  a    t 
  MMETSP1137-20121227|9280_1  63 VHPEGFMLYNACARGQlSVVREYISEGVDINWQDDLGYAAIFTATK 108
                 6679***********7699*************99999877655554 PP

  == domain 2    score: 1.0 bits;  conditional E-value: 0.0092
   TIGR03535  45 laalagedeargvervvvttkiadldeapadaadaylrlhllshrlv 91 
                   +l+ + +ar+ve+   + +++d+++a+a + +    lh++  +l+
  MMETSP1137-20121227|9280_1 192 CLELIVSVHARNVEEAEARERVTDIEAAAAAVINPGCELHTVHGQLI 238
                 4445667789*********************9999999999877665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (252 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       102  (0.0248659); expected 82.0 (0.02)
Passed bias filter:                       96  (0.0234032); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.22u 0.15s 00:00:00.37 Elapsed: 00:00:00.27
# Mc/sec: 1231.90
//
Query:       MMETSP1137-20121227|9282_1  [L=176]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0043   14.6   0.0     0.0069   14.0   0.0    1.3  1  TIGR03137 AhpC: peroxiredoxin


Domain annotation for each model (and alignments):
>> TIGR03137  AhpC: peroxiredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.0   1.7e-06    0.0069      27     116 ..      26     119 ..      20     154 .. 0.76

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 1.7e-06
   TIGR03137  27 edlkGkwsvlvfypadftfvcptele...dladkyeelkelgve.vysvstdthfvhkawhdeseaigkikypllgdptkkltrnfdvlieeag 116
                 e+lkGk +++v  p++ft   p         a+  ++l + g++ v+   ++   v +aw+++    ++    +l+d++ +lt+++++ i + g
  MMETSP1137-20121227|9282_1  26 EKLKGKKTIVVSLPGAFTPTDPRAXVpgyKKAELDDRLADAGIDqVFVFCVNDGAVMAAWKKDQGLTSESMIEFLADTQSELTEKLGITITHPG 119
                 689***************99997654222456677899999996488888899999******************************99876543 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (176 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        91  (0.0221843); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.20u 0.12s 00:00:00.32 Elapsed: 00:00:00.89
# Mc/sec: 261.01
//
Query:       MMETSP1137-20121227|9283_1  [L=94]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.26    9.4   4.5       0.36    9.0   0.7    2.0  2  TIGR03627 arch_S9P: archaeal ribosomal protein S9P


Domain annotation for each model (and alignments):
>> TIGR03627  arch_S9P: archaeal ribosomal protein S9P
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   0.7   8.7e-05      0.36      90     125 ..       8      42 ..       4      47 .. 0.80
   2 ?    2.0   0.1     0.013        51     100     127 ..      68      93 ..      50      94 .] 0.75

  Alignments for each domain:
  == domain 1    score: 9.0 bits;  conditional E-value: 8.7e-05
   TIGR03627  90 kelkdaflayDrtllvnDvrrkepkklggkgarakr 125
                 ++l++  ++yDr+l++  vr  e+  ++ k+ar+kr
  MMETSP1137-20121227|9283_1   8 ERLRNRPVKYDRELMKTTVRAMER-VQKVKEAREKR 42 
                 6799999***********998765.55567788776 PP

  == domain 2    score: 2.0 bits;  conditional E-value: 0.013
   TIGR03627 100 DrtllvnDvrrkepkklggkgarakrqk 127
                 D  l+v+   ++e +k+++k a + +qk
  MMETSP1137-20121227|9283_1  68 D--LIVSPLAQEEMQKVTQKAATRSKQK 93 
                 3..7888889999999999999999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (94 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       249  (0.0607021); expected 82.0 (0.02)
Passed bias filter:                      145  (0.0353486); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.15u 0.16s 00:00:00.31 Elapsed: 00:00:00.85
# Mc/sec: 145.96
//
Query:       MMETSP1137-20121227|9284_1  [L=162]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (162 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        76  (0.0185275); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.12s 00:00:00.29 Elapsed: 00:00:00.35
# Mc/sec: 610.92
//
Query:       MMETSP1137-20121227|9285_1  [L=151]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (151 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       212  (0.0516821); expected 82.0 (0.02)
Passed bias filter:                      105  (0.0255973); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.16s 00:00:00.35 Elapsed: 00:00:00.36
# Mc/sec: 553.62
//
Query:       MMETSP1137-20121227|9286_1  [L=393]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.5e-11   40.8   7.6    3.5e-11   40.8   5.3    3.3  4  TIGR00601 rad23: UV excision repair protein Rad23
  ------ inclusion threshold ------
      0.054   10.8   0.0       0.19    9.0   0.0    1.7  2  TIGR00084 ruvA: Holliday junction DNA helicase RuvA


Domain annotation for each model (and alignments):
>> TIGR00601  rad23: UV excision repair protein Rad23
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.4   0.0   0.00047      0.95     161     208 ..       5      52 ..       2      59 .. 0.78
   2 !   40.8   5.3   1.7e-14   3.5e-11      81     248 ..      58     217 ..      51     223 .. 0.70
   3 ?   -2.1   3.5      0.18   3.7e+02      76     138 ..     237     303 ..     235     314 .. 0.73
   4 ?   -5.2   1.1       1.6   3.2e+03      93     120 ..     351     375 ..     341     391 .. 0.41

  Alignments for each domain:
  == domain 1    score: 6.4 bits;  conditional E-value: 0.00047
   TIGR00601 161 veeimemGyereeverAlRAafnnPdRAveYLltGiPedleaaepaaa 208
                 ++e++ mG++  + ++Al    n+ + Av+ Ll     +l +a  aa+
  MMETSP1137-20121227|9286_1   5 LRELVGMGFDERQASAALHRCNNDVNDAVQLLLDAPTSSLTDASSAAH 52 
                 57899*************************998764455555544554 PP

  == domain 2    score: 40.8 bits;  conditional E-value: 1.7e-14
   TIGR00601  81 kakaaePaatpesaptptpsatpasvaekksaaPasaveeessaeeeatatalesedtsaesegdsdretlvvGsereetveeimemGyereeverAlRAafnnPdRAveYLltGiPedleaaepaaaeqpseaaastetpqeddvaaaaaqaeteeaateaasGedp 248
                 +++a++ +a+p ++ptp+p+   +   ++ +++P +a+  ++ ++ ++ a+al++ +++++ +g   r + +  +  e  v+ i+emG++  +v++A+R a n+ + Av  Ll G P+d      +     ++a+ + +t + ++  +a  + +  ++++++  G+++
  MMETSP1137-20121227|9286_1  58 HTHAQASSAAPPAVPTPAPTLLLPHSVAQRVPSPGGAA--NTASHSSSHASALSPAAAMSTXAG--RRISTISSNIDEALVRSIVEMGFDERRVQQAVRSANNDREQAVTRLLDGQPDDSA----VGSYSANDANNGFSTHDANNSYGADIGNGGYGNNSNSGHGGHS 217
                 35788899999999999995554444555666666665..555556666777766666666555..444556666678899*************************************988....4455555666666666666666666655555555555556655 PP

  == domain 3    score: -2.1 bits;  conditional E-value: 0.18
   TIGR00601  76 kkKavkakaaePaatpesaptptp..satpasvae..kksaaPasaveeessaeeeatatalesedt 138
                 +++av+a aa+P+a p+  + p++  sa p ++ +  ++ +aP  a +++ +++ + + +a++++  
  MMETSP1137-20121227|9286_1 237 QTRAVQAXAAAPTAPPHFNTLPSRpqSAQPMAPYAigATLSAPFDASQPHATPPFADAGPAFHQPHH 303
                 678999999*******999999986444444443322456788888888888888888888777655 PP

  == domain 4    score: -5.2 bits;  conditional E-value: 1.6
   TIGR00601  93 saptptpsatpasvaekksaaPasavee 120
                  a+ p+     +s a +++  Pa + ++
  MMETSP1137-20121227|9286_1 351 FASYPSY---YPSAAYQPAYVPAYSPQP 375
                 4444443...222222223333333222 PP

>> TIGR00084  ruvA: Holliday junction DNA helicase RuvA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0      0.14   2.8e+02     153     173 ..       7      27 ..       4      35 .. 0.82
   2 ?    9.0   0.0   9.3e-05      0.19     143     178 ..     126     161 ..     108     167 .. 0.80

  Alignments for each domain:
  == domain 1    score: -1.3 bits;  conditional E-value: 0.14
   TIGR00084 153 aLksLGykqkeiqkalkkike 173
                  L+ +G+++++++ al++ ++
  MMETSP1137-20121227|9286_1   7 ELVGMGFDERQASAALHRCNN 27 
                 5899**********9998876 PP

  == domain 2    score: 9.0 bits;  conditional E-value: 9.3e-05
   TIGR00084 143 aeaaeeelleaLksLGykqkeiqkalkkikekedla 178
                 +++ +e l+ +++ +G++++ +q+a++ +++  + a
  MMETSP1137-20121227|9286_1 126 SSNIDEALVRSIVEMGFDERRVQQAVRSANNDREQA 161
                 455668899******************999877544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (393 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       102  (0.0248659); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.31u 0.16s 00:00:00.47 Elapsed: 00:00:00.35
# Mc/sec: 1482.05
//
Query:       MMETSP1137-20121227|9288_1  [L=290]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (290 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       194  (0.047294); expected 82.0 (0.02)
Passed bias filter:                      126  (0.0307167); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.18s 00:00:00.45 Elapsed: 00:00:00.45
# Mc/sec: 850.60
//
Query:       MMETSP1137-20121227|9289_1  [L=78]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (78 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        55  (0.0134081); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.39
# Mc/sec: 263.98
//
Query:       MMETSP1137-20121227|9290_1  [L=356]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (356 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        46  (0.011214); expected 82.0 (0.02)
Passed bias filter:                       41  (0.00999512); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.14s 00:00:00.40 Elapsed: 00:00:00.39
# Mc/sec: 1204.82
//
Query:       MMETSP1137-20121227|9292_1  [L=564]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.7e-08   29.8   0.0      7e-08   29.2   0.0    1.1  1  TIGR02938 nifL_nitrog: nitrogen fixation negative regulator NifL
    6.6e-07   27.4   0.0    1.2e-06   26.5   0.0    1.4  1  TIGR00229 sensory_box: PAS domain S-box protein


Domain annotation for each model (and alignments):
>> TIGR02938  nifL_nitrog: nitrogen fixation negative regulator NifL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.2   0.0   3.4e-11     7e-08      26     107 ..      26     107 ..      21     134 .. 0.95

  Alignments for each domain:
  == domain 1    score: 29.2 bits;  conditional E-value: 3.4e-11
   TIGR02938  26 ilyanaafseitGyakeeviGknesvlsnrttPpevyqalwgslaekkPwaGkllnrrkdgelylaeltvaPvlneaGetth 107
                 ++++n a++ +tG+a  e++G+   +l    t +    +l g+l   +    +l n  k ge++l el + P+ +e G  t+
  MMETSP1137-20121227|9292_1  26 VVHVNPAWTCLTGFAASEIVGQTCKILQGPETSKAALGELRGALNGYRTVVVRLYNYTKQGERFLNELEIVPLHDEQGIXTF 107
                 789**************************************************************************98775 PP

>> TIGR00229  sensory_box: PAS domain S-box protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.5   0.0     6e-10   1.2e-06      25     106 ..      24     105 ..       6     110 .. 0.89

  Alignments for each domain:
  == domain 1    score: 26.5 bits;  conditional E-value: 6e-10
   TIGR00229  25 GnilyvNrafeeifGYsaeeliGrnvlelipeedreevrerierrlegerepvseerrvkrkdGseiwvevsvspird.agge 106
                  ++++vN+a+  ++G++a e++G++  +l  +e +++    ++ +l g r +v    ++ +k+G+++  e+ + p++d +g  
  MMETSP1137-20121227|9292_1  24 FKVVHVNPAWTCLTGFAASEIVGQTCKILQGPETSKAALGELRGALNGYRTVVVRLYNY-TKQGERFLNELEIVPLHDeQGIX 105
                 5899*******************************************999********9.*****************955554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (564 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        67  (0.0163335); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.36u 0.11s 00:00:00.47 Elapsed: 00:00:00.89
# Mc/sec: 836.43
//
Query:       MMETSP1137-20121227|9293_1  [L=404]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (404 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       100  (0.0243784); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.11s 00:00:00.40 Elapsed: 00:00:00.97
# Mc/sec: 549.73
//
Query:       MMETSP1137-20121227|9294_1  [L=62]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (62 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        52  (0.0126767); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.32
# Mc/sec: 255.73
//
Query:       MMETSP1137-20121227|9295_1  [L=82]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (82 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        91  (0.0221843); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.13s 00:00:00.27 Elapsed: 00:00:00.30
# Mc/sec: 360.77
//
Query:       MMETSP1137-20121227|9296_1  [L=46]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (46 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        26  (0.00633837); expected 82.0 (0.02)
Passed bias filter:                       26  (0.00633837); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.15s 00:00:00.29 Elapsed: 00:00:00.32
# Mc/sec: 189.73
//
Query:       MMETSP1137-20121227|9297_1  [L=291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.034   12.1   3.8      0.099   10.6   2.6    1.8  1  TIGR03141 cytochro_ccmD: heme exporter protein CcmD


Domain annotation for each model (and alignments):
>> TIGR03141  cytochro_ccmD: heme exporter protein CcmD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   2.6   2.4e-05     0.099      11      32 ..       8      29 ..       7      31 .. 0.95

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 2.4e-05
   TIGR03141 11 WlaYgitalvLaglivwslldr 32
                W+a+++talvL +l+ ++ +++
  MMETSP1137-20121227|9297_1  8 WAAWAATALVLSMLLSSVTWQQ 29
                *****************99997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (291 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       127  (0.0309605); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.24u 0.15s 00:00:00.39 Elapsed: 00:00:00.56
# Mc/sec: 673.84
//
Query:       MMETSP1137-20121227|9298_1  [L=137]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (137 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        42  (0.0102389); expected 82.0 (0.02)
Passed bias filter:                       40  (0.00975134); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.16s 00:00:00.33 Elapsed: 00:00:00.34
# Mc/sec: 531.84
//
Query:       MMETSP1137-20121227|9299_1  [L=344]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (344 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       207  (0.0504632); expected 82.0 (0.02)
Passed bias filter:                      101  (0.0246221); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.14s 00:00:00.43 Elapsed: 00:00:00.42
# Mc/sec: 1081.05
//
Query:       MMETSP1137-20121227|9300_1  [L=392]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      3e-42  142.0   0.1      4e-42  141.6   0.0    1.2  1  TIGR00231 small_GTP: small GTP-binding protein domain
    6.6e-05   19.9   0.6    0.00033   17.6   0.4    1.8  1  TIGR03594 GTPase_EngA: ribosome-associated GTPase EngA
      0.004   13.9   0.2     0.0098   12.6   0.1    1.5  1  TIGR03918 GTP_HydF: [FeFe] hydrogenase H-cluster maturation GTPase HydF
     0.0058   13.6   0.5      0.017   12.0   0.3    1.7  1  TIGR00450 mnmE_trmE_thdF: tRNA modification GTPase TrmE
     0.0085   13.3   0.1      0.021   12.0   0.1    1.5  1  TIGR00436 era: GTP-binding protein Era
  ------ inclusion threshold ------
      0.024   12.8   0.0      0.057   11.5   0.0    1.6  2  TIGR02528 EutP: ethanolamine utilization protein, EutP


Domain annotation for each model (and alignments):
>> TIGR00231  small_GTP: small GTP-binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  141.6   0.0   5.8e-45     4e-42       2     162 ..      25     183 ..      24     185 .. 0.98

  Alignments for each domain:
  == domain 1    score: 141.6 bits;  conditional E-value: 5.8e-45
   TIGR00231   2 keikivivGhvdvGKstLlnsllknkisiteskpgvtrdyvteqieedGktykvnllDTaGqedfdairrlyvreverslevvdivilvldveeglekqtkeiiheakkkgvpiilvvnKiDlkd..dlktkvkslfaklnaepiielsaetgknidklfklv 162
                 + +k+vi+G+++vGKs+Ll+++++n+ +   sk++++ +++t++i+ dGk +k++++DTaGqe+++ai+++y+r + + l v+di+ + l++e+++ ++ ke++ +a+  +++++lv+nK+Dlk+  +++t++++ fa+ n+ ++ie+sa + +n+d +f+++
  MMETSP1137-20121227|9300_1  25 YLFKVVIIGDSGVGKSNLLSRFTRNE-FHLDSKSTIGVEFATRSIQHDGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDISKR-LTFENVE-RWLKELRTHAD-PSIVVMLVGNKCDLKHlqAVLTDDAKSFAEQNNLAFIETSALDATNVDLAFETI 183
                 568***********************.*************************************************************.*****99.***********.************************************************999986 PP

>> TIGR03594  GTPase_EngA: ribosome-associated GTPase EngA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.4   4.8e-07   0.00033     173     351 ..      24     193 ..      11     200 .. 0.67

  Alignments for each domain:
  == domain 1    score: 17.6 bits;  conditional E-value: 4.8e-07
   TIGR03594 173 eepikiaiiGrpNvGKStLvNallgeervivsdiaGtTrDsidievevkgk..kylliDTAGirrkkkveekveklsvlrtlkaieradvvllvlDategis..eqDlkiaglileegkalvi..vvNKwDlvkdekeleelkkeleeklkflkfapivfiSAltgkgveklleaik.evyeslsk 351
                 +  +k+ iiG   vGKS L+ +++++e  + s+ + +  +  + +++++gk  k ++ DTAG  r + ++++             + a  +llv D+++ ++  + +  + +l +++  ++v+  v NK+Dl     +l+++ ++  ++++  +   ++ +SAl+ ++v+  +e+i  e+y+ +++
  MMETSP1137-20121227|9300_1  24 DYLFKVVIIGDSGVGKSNLLSRFTRNEFHLDSK-STIGVEFATRSIQHDGKviKAQIWDTAGQERYRAITSAYY-----------RGAVGALLVYDISKRLTfeNVERWLKELRTHADPSIVVmlVGNKCDLK----HLQAVLTDDAKSFAEQNNLAFIETSALDATNVDLAFETILiEIYRIVTR 193
                 456899999999999999999999999877554.4455555556666665522678999999998888864332...........233335777777766541155555555555555554431156999988....6777777777788888888899999999999998888875366665555 PP

>> TIGR03918  GTP_HydF: [FeFe] hydrogenase H-cluster maturation GTPase HydF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.6   0.1   1.4e-05    0.0098       9     164 ..      28     184 ..      23     199 .. 0.66

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 1.4e-05
   TIGR03918   9 hialfGrrNaGKSsliNaltgqdvaivsdvpGtTtDpvekamEllplGpvv...liDTaGldDegeLGelRvektrevlektdlallvvdaeaele.eleeelleelkekkipvivvl...nkidlkeeeke....keklekkkeeevvlvsakekegieelkeali 164
                 +++++G   +GKS l+  +t+++  + s+    T      +  +++ G v+   + DTaG +   ++ +  ++ +         allv d +++l+ e  e++l+el+++  p ivv+   nk+dlk+ ++     +++  ++++  ++ +sa + ++++   e+++
  MMETSP1137-20121227|9300_1  28 KVVIIGDSGVGKSNLLSRFTRNEFHLDSKS---TIGVEFATRSIQHDGKVIkaqIWDTAGQERYRAITSAYYRGAVG-------ALLVYDISKRLTfENVERWLKELRTHADPSIVVMlvgNKCDLKHLQAVltddAKSFAEQNNLAFIETSALDATNVDLAFETIL 184
                 68999*******************999974...33344444456666666433388998866555555444444444.......5555555433321334567777777766666554444*****99887665556677788888999999999999886555554 PP

>> TIGR00450  mnmE_trmE_thdF: tRNA modification GTPase TrmE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.0   0.3   2.6e-05     0.017     210     329 ..      27     144 ..      19     194 .. 0.62

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 2.6e-05
   TIGR00450 210 lklaivGktNvGKSSLlNallkkdraiVsdikGttRDvvEedleleGilv..kllDtAGiReaadkvEklGiekslkaikeadlvlyvlDaskpltkdd..eliitlkkkkkdlllvl...NKiDLa 329
                 +k++i+G+  vGKS Ll  + +++  + s+      +    +++ +G ++  ++ DtAG  e   ++  +         + a   l+v D+sk lt ++  + +++l+ +  + ++v+   NK DL+
  MMETSP1137-20121227|9300_1  27 FKVVIIGDSGVGKSNLLSRFTRNEFHLDSKST-IGVEFATRSIQHDGKVIkaQIWDTAGQ-ERYRAITSA-------YYRGAVGALLVYDISKRLTFENveRWLKELRTHADPSIVVMlvgNKCDLK 144
                 89********************9998877543.223556667777776552269999994.233333222.......22333333455555555554443345555555555544332222777776 PP

>> TIGR00436  era: GTP-binding protein Era
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.0   0.1   3.1e-05     0.021       2     153 ..      28     177 ..      27     189 .. 0.72

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 3.1e-05
   TIGR00436   2 fvailGrpnvGKSTLlNkllgqkisivSpkaqTTrnrisgiltegasqii...fiDtPGlhekkhklnellvkeirkalsevdlilfvvdsdeknkedellleklqklkap...vvlalnkldnkekdkllelidkeasllefkeiveisalkgenve 153
                 +v i+G + vGKS Ll + + ++  + S+   T   +  +  +++  ++i     Dt G  e+ +++ ++  + +  a     l+++ +    + ++ e  l++l++   p   v+l+ nk d k+ + +l+  +k    +++ + +e+sal  +nv+
  MMETSP1137-20121227|9300_1  28 KVVIIGDSGVGKSNLLSRFTRNEFHLDSKS--TIGVEFATRSIQHDGKVIkaqIWDTAGQ-ERYRAITSAYYRGAVGA-----LLVYDISKRLTFENVERWLKELRTHADPsivVMLVGNKCDLKHLQAVLTDDAKSFAEQNNLAFIETSALDATNVD 177
                 689*********************999875..6666777777777777662224577773.33444444444444444.....677777777777774455556666554411155667999***9999999999999999999********999987 PP

>> TIGR02528  EutP: ethanolamine utilization protein, EutP
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   8.3e-05     0.057       2      54 ..      28      82 ..      27      86 .. 0.87
   2 ?   -2.9   0.0       2.4   1.6e+03      61      83 ..     128     150 ..     115     172 .. 0.64

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 8.3e-05
   TIGR02528  2 rimliGsvgcGkttLtqaLkgeeik..ykktqaveykdkaiDtPGeylenrryYs 54
                ++++iG +g Gk  L  + + +e +   k t  ve+  + i   G  ++ + + +
  MMETSP1137-20121227|9300_1 28 KVVIIGDSGVGKSNLLSRFTRNEFHldSKSTIGVEFATRSIQHDGKVIKAQIWDT 82
                799**************9988876522799************9999998888765 PP

  == domain 2    score: -2.9 bits;  conditional E-value: 2.4
   TIGR02528  61 adadvivlvqsatdeesllspgf 83 
                 ad +++v++ + + + ++l + +
  MMETSP1137-20121227|9300_1 128 ADPSIVVMLVGNKCDLKHLQAVL 150
                 55555555554444444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (392 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       204  (0.0497318); expected 82.0 (0.02)
Passed bias filter:                      191  (0.0465627); expected 82.0 (0.02)
Passed Vit filter:                        48  (0.0117016); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.44u 0.18s 00:00:00.62 Elapsed: 00:00:01.06
# Mc/sec: 488.11
//
Query:       MMETSP1137-20121227|9302_1  [L=75]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (75 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       104  (0.0253535); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.12s 00:00:00.25 Elapsed: 00:00:00.31
# Mc/sec: 319.33
//
Query:       MMETSP1137-20121227|9303_1  [L=734]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (734 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       105  (0.0255973); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.49u 0.15s 00:00:00.64 Elapsed: 00:00:00.67
# Mc/sec: 1445.97
//
Query:       MMETSP1137-20121227|9304_1  [L=340]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (340 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       148  (0.03608); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.17s 00:00:00.43 Elapsed: 00:00:00.35
# Mc/sec: 1282.18
//
Query:       MMETSP1137-20121227|9305_1  [L=210]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (210 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        68  (0.0165773); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.16s 00:00:00.34 Elapsed: 00:00:00.27
# Mc/sec: 1026.58
//
Query:       MMETSP1137-20121227|9306_1  [L=248]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      1e-35  120.9   0.2    1.2e-35  120.6   0.1    1.1  1  TIGR03634 arc_protsome_B: proteasome endopeptidase complex, archaeal, beta subunit
      8e-15   53.0   1.3    1.1e-14   52.6   0.9    1.1  1  TIGR03690 20S_bact_beta: proteasome, beta subunit
    1.4e-14   51.9   0.0    5.2e-14   50.1   0.0    1.7  1  TIGR03633 arc_protsome_A: proteasome endopeptidase complex, archaeal, alpha subunit
    5.1e-05   20.9   0.0    8.6e-05   20.2   0.0    1.4  1  TIGR03692 ATP_dep_HslV: ATP-dependent protease HslVU, peptidase subunit


Domain annotation for each model (and alignments):
>> TIGR03634  arc_protsome_B: proteasome endopeptidase complex, archaeal, beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  120.6   0.1   1.2e-38   1.2e-35       1     184 [.      49     232 ..      49     233 .. 0.97

  Alignments for each domain:
  == domain 1    score: 120.6 bits;  conditional E-value: 1.2e-38
   TIGR03634   1 gtTtvGikvkdgvvlAadkraslgnlvasknvkKvfkiddkialtiaGsvgdaqslvrllkaeaklyelrrkkkisvkalatllsnllksskflpflvqllvgGvde.egpklyslDplGsiiedkytatGsGspvalgvLedeYeedlsleeakklavkaiksaieRDvasGdgidvvvitkdg 184
                 gtT++ + ++ gv+l ad+r+s g ++++++ +K++ +d+ki    +Gs +d q++ ++++  ++  +++ +k   v ++a++   l +s+k    ++ ++ +G d+ +g ++y l   G+++e  y++ GsGs++ +g  +++Y+++++ e+ ++ +++ai+ a++RD  sG  i++vvi+  g
  MMETSP1137-20121227|9306_1  49 GTTIMAVAFDGGVILGADSRVSTGVYISNRASDKITAVDEKIYCCRSGSAADTQAVSDYVRYFLDQHRMEYGKAPKVATAASFFQRLCYSNKD-MLMAGMICAGWDSvKGGQVYALPIGGALLERPYATGGSGSTYIYGFCDAHYKPGMTKEQCVDFVTRAISHAMARDCSSGGVIRMVVIDXGG 232
                 89*****************************************************************************************99.57899*******9999******9999999999*******************************************************9766 PP

>> TIGR03690  20S_bact_beta: proteasome, beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.6   0.9     1e-17   1.1e-14       3     183 ..      47     221 ..      45     232 .. 0.89

  Alignments for each domain:
  == domain 1    score: 52.6 bits;  conditional E-value: 1e-17
   TIGR03690   3 phgttivalaykgGvllaGdrratqGnliasrdvekvfkadeysavgiaGtaglavelvklfqvelehyekieGvplslegkanrlaamvrsnlaaalqGlavvpllvGydleaekGrifsydvvggkeeeeeyesvGsGsvfakgalkklykedlseedavrvavealydaadddsatGG 183
                   gtti+a+a+ gGv+l  d r ++G  i++r  +k+   de      +G+a+ +  +    +  l+ +    G+   +++ a+ +  +  sn  + + G++     +G+d  +  G++++  + g+   e+ y++ GsGs +  g     yk+++++e+ v  + +a+  a   d ++GG
  MMETSP1137-20121227|9306_1  47 DTGTTIMAVAFDGGVILGADSRVSTGVYISNRASDKITAVDEKIYCCRSGSAADTQAVSDYVRYFLDQHRMEYGKAPKVATAASFFQRLCYSNKDMLMAGMI----CAGWDSVK-GGQVYALPIGGALL-ERPYATGGSGSTYIYGFCDAHYKPGMTKEQCVDFVTRAISHAMARDCSSGG 221
                 679***************************************8888888888877666666666688888888999999999999***************96....69***865.69999997766555.568***************************************999999998 PP

>> TIGR03633  arc_protsome_A: proteasome endopeptidase complex, archaeal, alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.1   0.0   5.1e-17   5.2e-14      26     204 ..      46     221 ..      40     242 .. 0.84

  Alignments for each domain:
  == domain 1    score: 50.1 bits;  conditional E-value: 5.1e-17
   TIGR03633  26 vkrgttavGiktkegvvlivdkrits.klleaesiekifkiDdhvgaataGlvaDarvlidrarveaqvnrltYdepievevlakkvadlkqqytqvGGvrPfGvalliaGvddk.earlfetdPsGalleykavaiGagrekvlellekeykedlsldeaielalkalakaleeelkaee 204
                 v  gtt + + ++ gv+l +d r+ +   +++++ +ki  +D+++ ++ +G +aD++++ d+ r    ++r+ Y+++ +v + a     l   y            ++ aG d+  + +++    +Galle   ++ G+g++ +  + + +yk  ++ ++++++  +a+++a+ ++ ++  
  MMETSP1137-20121227|9306_1  46 VDTGTTIMAVAFDGGVILGADSRVSTgVYISNRASDKITAVDEKIYCCRSGSAADTQAVSDYVRYFLDQHRMEYGKAPKVATAASFFQRL--CYSNK---DMLMAGMICAGWDSVkGGQVYALPIGGALLERPYATGGSGSTYIYGFCDAHYKPGMTKEQCVDFVTRAISHAMARDCSSGG 221
                 889********************97615789999*********************************************99876544332..23333...33456799****9974789*************9999**********************************99986665543 PP

>> TIGR03692  ATP_dep_HslV: ATP-dependent protease HslVU, peptidase subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   0.0   8.4e-08   8.6e-05       1      74 [.      50     122 ..      50     144 .. 0.92

  Alignments for each domain:
  == domain 1    score: 20.2 bits;  conditional E-value: 8.4e-08
   TIGR03692   1 ttilavrkngkvviagdGqvtlgetvlkenarkvrrlyegkvlaGfaGstadaltLferfeekleeykgnlara 74 
                 tti+av  +g v++++d +v+ g  +  + + k+  + ++k+ +  +Gs+ad+ ++ + +   l++++ +  +a
  MMETSP1137-20121227|9306_1  50 TTIMAVAFDGGVILGADSRVSTGVYISNRASDKITAV-DEKIYCCRSGSAADTQAVSDYVRYFLDQHRMEYGKA 122
                 9*********************************875.789*****************9999999998777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (248 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       127  (0.0309605); expected 82.0 (0.02)
Passed bias filter:                      120  (0.029254); expected 82.0 (0.02)
Passed Vit filter:                        18  (0.0043881); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.26u 0.14s 00:00:00.40 Elapsed: 00:00:00.40
# Mc/sec: 818.33
//
Query:       MMETSP1137-20121227|9307_1  [L=304]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (304 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       122  (0.0297416); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.16s 00:00:00.39 Elapsed: 00:00:00.35
# Mc/sec: 1146.42
//
Query:       MMETSP1137-20121227|9308_1  [L=492]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (492 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       129  (0.0314481); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.15s 00:00:00.50 Elapsed: 00:00:00.59
# Mc/sec: 1100.65
//
Query:       MMETSP1137-20121227|9309_1  [L=126]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (126 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        96  (0.0234032); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.14s 00:00:00.29 Elapsed: 00:00:00.51
# Mc/sec: 326.09
//
Query:       MMETSP1137-20121227|9310_1  [L=418]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.8e-07   26.7   0.0    4.1e-06   24.0   0.0    2.0  1  TIGR02721 ycfN_thiK: thiamine kinase
  ------ inclusion threshold ------
       0.01   13.0   0.0      0.016   12.4   0.0    1.3  1  TIGR00938 thrB_alt: homoserine kinase
      0.017   12.2   0.0      0.042   10.9   0.0    1.5  2  TIGR02904 spore_ysxE: spore coat protein YsxE


Domain annotation for each model (and alignments):
>> TIGR02721  ycfN_thiK: thiamine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.0   0.0     3e-09   4.1e-06       4     185 ..      88     299 ..      85     307 .. 0.58

  Alignments for each domain:
  == domain 1    score: 24.0 bits;  conditional E-value: 3e-09
   TIGR02721   4 lsgGLtneswkie.kegisfvaRrqskvekalgvd.rqreykiLqalsalklaPkv...ilvneewl......lvewleGevitkdefvaldellelaal.......laqlhsqplsgarls.......lkarlaqyWlqidparrtpellrllk..qfrkapepaplklallHlDvhaeNlvkteqGlk...lIDWEYAsdgDialeLaav 185
                 +s G +n ++ ++ +++ + v+R+q + +   g++   rey+++ al+     P +   i v + ++      + ++++G+  +     + +++++ aal       + ++h      a ls       + +r  + W+    a  t  ++++ k   +  +++p+    +l+H D+  +N++ +++G     ++DWE A++g +a +La+ 
  MMETSP1137-20121227|9310_1  88 FSHGQSNPTYLLKaGDQVKLVLRKQPPGKLLRGAHaVDREYRAMTALKRHTDVPVPttrIYVDDPGVigtpffVYDYVPGRFFKDASMRKAESAQDRAALwasvlqtICRIHTVDYVEAGLSdfgkvggYLPRQTKVWTAQYRAAETERIEAMEKliAWLPEALPTDDITTLVHGDLRVDNMIFSANGSAvdaVLDWELATLGHPASDLALA 299
                 566777777777766777777777777666666652456777777776655555441113334444312222156777777766443333333333333300000003333333332222221111111556666667776667777766666653367788888888899*****************8533379**************986 PP

>> TIGR00938  thrB_alt: homoserine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   1.1e-05     0.016     165     228 ..     235     300 ..     185     335 .. 0.82

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 1.1e-05
   TIGR00938 165 elaalldkeldalkkflprdLPrgvihadlfkdnvlldgdk..lkgvidfyfaCedallydlaiav 228
                 e  + ++k ++ l + lp d  ++++h dl  dn+++ +++  + +v+d+  a  +  + dla+a 
  MMETSP1137-20121227|9310_1 235 ERIEAMEKLIAWLPEALPTDDITTLVHGDLRVDNMIFSANGsaVDAVLDWELATLGHPASDLALAT 300
                 44455566666666666666668899***********887666********************986 PP

>> TIGR02904  spore_ysxE: spore coat protein YsxE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0      0.18   2.5e+02      90     139 ..     178     228 ..     176     242 .. 0.65
   2 ?   10.9   0.0   3.1e-05     0.042     166     235 ..     228     298 ..     217     302 .. 0.78

  Alignments for each domain:
  == domain 1    score: -1.5 bits;  conditional E-value: 0.18
   TIGR02904  90 eeekeernekvekmfqelallHrktvkeeevke.eelkkhyerlkskwere 139
                 +e+ ++r +   +++q++ ++H+    e  ++   ++ ++  r  + w  +
  MMETSP1137-20121227|9310_1 178 AESAQDRAALWASVLQTICRIHTVDYVEAGLSDfGKVGGYLPRQTKVWTAQ 228
                 577888999999999999999998766666554245555555555555555 PP

  == domain 2    score: 10.9 bits;  conditional E-value: 3.1e-05
   TIGR02904 166 yykevvraaefakekleewheatkekesartvlvHGklslsHflydetregy..finfEkasfasPlkDlia 235
                 +y++ +  +  a ekl +w  +   +  + t+lvHG l+++ +++  +++     +++E a + +P++Dl+ 
  MMETSP1137-20121227|9310_1 228 QYRAAETERIEAMEKLIAWLPEALPTDDI-TTLVHGDLRVDNMIFSANGSAVdaVLDWELATLGHPASDLAL 298
                 55555555666777777887776666654.78*************99887643399*************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (418 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       120  (0.029254); expected 82.0 (0.02)
Passed bias filter:                      113  (0.0275475); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.33u 0.17s 00:00:00.50 Elapsed: 00:00:00.54
# Mc/sec: 1021.69
//
Query:       MMETSP1137-20121227|9311_1  [L=250]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (250 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        84  (0.0204778); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.11s 00:00:00.33 Elapsed: 00:00:00.33
# Mc/sec: 999.92
//
Query:       MMETSP1137-20121227|9312_1  [L=192]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.6e-07   28.4   0.0    3.5e-07   28.0   0.0    1.2  1  TIGR01627 A_thal_3515: uncharacterized plant-specific domain TIGR01627


Domain annotation for each model (and alignments):
>> TIGR01627  A_thal_3515: uncharacterized plant-specific domain TIGR01627
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.0   0.0   8.4e-11   3.5e-07      20      78 ..      84     143 ..      70     173 .. 0.81

  Alignments for each domain:
  == domain 1    score: 28.0 bits;  conditional E-value: 8.4e-11
   TIGR01627  20 stalsfdelkvlsdvldrksPcnllvfGlaheslllk.slnhrGrtvfieeekiyiakve 78 
                 + + ++d   v++    r     +lvfG + +s++++  +n++G tvf+e++k ++a   
  MMETSP1137-20121227|9312_1  84 AQETTYDRTLVMRALAIREHKARMLVFGCGRDSVFWAkHMNRHGETVFLEDNKEWAALNV 143
                 55667777777777777888899*************6379***************99754 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (192 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       100  (0.0243784); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.19u 0.13s 00:00:00.32 Elapsed: 00:00:00.35
# Mc/sec: 724.05
//
Query:       MMETSP1137-20121227|9313_1  [L=772]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   1.7e-105  351.2   0.0   2.1e-105  350.9   0.0    1.1  1  TIGR02765 crypto_DASH: cryptochrome, DASH family
      1e-36  124.7   0.0    1.9e-36  123.8   0.0    1.3  1  TIGR03556 photolyase_8HDF: deoxyribodipyrimidine photo-lyase, 8-HDF type
    4.9e-24   82.8   0.4    1.1e-23   81.7   0.3    1.5  1  TIGR02766 crypt_chrom_pln: cryptochrome, plant family
  ------ inclusion threshold ------
      0.037   11.1   0.0       0.33    8.0   0.0    2.0  2  TIGR00591 phr2: deoxyribodipyrimidine photolyase


Domain annotation for each model (and alignments):
>> TIGR02765  crypto_DASH: cryptochrome, DASH family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  350.9   0.0  2.1e-108  2.1e-105       2     431 .]      38     499 ..      37     499 .. 0.90

  Alignments for each domain:
  == domain 1    score: 350.9 bits;  conditional E-value: 2.1e-108
   TIGR02765   2 vvlllfr.ndLRleDnellakasskeeelvpvyvfdarqiklsavaglaklGkarakFlaesvadLktsLkklGsdLlvragkpedvlkelvkelkvravflteeegseeksvekkveealaklkie.eklwgstllheddlpfe.ledlPdvftqfRkkveaklkvrksleapek..lpalpk...sedeganlPtleelv.....eaeseedersslefkGGetsalarvkeyflsks..lksYketRngl......lgvdystklspwLalGcvsarqihealkrYekergendstywvifeLlWRdyfrflalkygdklFrleGlrg..kkaktkedek...ilekwkegttgyplvdanmreLaatGymsnRgRqnvasflvkelgldWryGaewfetlLvDyDvssnwgnWqylaGvgndpRgaRqFn.......lekqakdYDpdgeyvktWvkel 431
                 vv+++ +  dLRl+D+e+   a+ +   ++ ++vfd+  +     ++l+k+G +ra+Fl+esv++L+ +L+++G++L v +g++e++ k+l  e +++ v++ +e++s+e + +++v++ la+++++ +  wg tl+h ddlp + ++ +P++++ fR+ ve++ +vr+ ++ pe     + p+   ++   ++lPtl+el+     +a+s+ der+ ++++GGe++al  v+ey++ ++   ++Y  + n++      +g++  tklspwLa Gc+sar++h+++++Ye+ rg+ ++tyw+  eL+WRd++rf al +gd +F+l+G++g  + +++++  +    l++w +g tgyp+vda mreLaatGy+   gR   + flv++l ldWr+G e+fe+ L+Dy+ s+nwgnW y    ++ pR   +Fn       +   a+++Dp+  +vk+W++el
  MMETSP1137-20121227|9313_1  38 VVIVWHKcTDLRLHDHETSSIAHATGLPVIHLFVFDPFWFAPLPLTKLPKTGVHRATFLLESVVNLHLNLQRHGQRLHVFHGPTEEIFKHLCVEYQIKFVCAFSEVCSQELRLDERVRAVLATNGVQlRLYWGFTLYHLDDLPADlMRRFPKTYSAFRRLVEERSRVRAEVRCPEDgcWSPPPTsgsAHASATRLPTLAELGlcvdgQAASRVDERAPVAWVGGEQAALGWVQEYIWRRDglSRQYVGATNTMtegkcaIGAESTTKLSPWLAHGCLSARTLHAEVEAYENARGKSKGTYWLKHELIWRDFLRFGALAWGDEIFKLDGIDGglRGISWERGPDardALQRWIQGGTGYPFVDAFMRELAATGYTTHCGRECACWFLVRDLALDWRLGGEYFESILIDYEPSANWGNWAYRIATTA-PRAPPTFNepvrtteMLLWAQQHDPHALHVKRWLPEL 499
                 788998747**********99999999**************999***********************************************************************************8889**************8899**************************9875555555666777889******9722222556669************************99986779******9955444458999*****************************************************************994456677764323449************************************************************************987665.7887777732222224556789***********9985 PP

>> TIGR03556  photolyase_8HDF: deoxyribodipyrimidine photo-lyase, 8-HDF type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  123.8   0.0   1.9e-39   1.9e-36       2     430 ..      38     502 ..      37     530 .. 0.80

  Alignments for each domain:
  == domain 1    score: 123.8 bits;  conditional E-value: 1.9e-39
   TIGR03556   2 lilfwhr.rdlrlsdnlglaaarqksakvvglfcldekil......kaddiaparvayllgclqelqerykrlgsellilrgdpvqllpklakaleakavywnldvepysrkrdravaaalkekgiavktawdqllhspeeiltksgkpy.tvytpfwknwsskkkae.pvetpkeleglteaekeaiaklgvialptakdlgfewdad..........lilepgeaaaeakleefvdk...aieeyqeqrn.......fpaldgtsqlsaalkfgvigirtvwqatlealeasrseearesirtwqqelawrefyqhalysf.pelad.gpyrekfkefpwe...nneahfqawcegktgypivdaamrqlnetgwmhnrcrmivasfltkdliinwqwgekyfmqklidgdlaannggwqwsassgmd..p....kplrifnpasqaqkfdpeaeyirrwlpelrsl 430
                 ++++wh+  dlrl d+ + + a++ +  v+ lf +d+  +      k       r ++ll ++ +l  + +r g +l +++g   +++ +l  + + k v    +v     + d++v a l ++g++++  w   l++ +++ ++  + +   y+ f +  +++++ +  v +p e    ++   +  a++ ++ lpt+++lg+  d++          +    ge+aa   ++e++ +     ++y    n         + + t++ls+ l  g+++ rt+ +   ea+e++r +         ++el wr+f ++    +  e+ +        + + we   + ++ +q w++g tgyp vda mr+l+ tg+     r     fl++dl ++w+ g +yf   lid + +an g w +  ++     p     p+r  +    aq++dp+a +++rwlpel+ l
  MMETSP1137-20121227|9313_1  38 VVIVWHKcTDLRLHDHETSSIAHATGLPVIHLFVFDPFWFaplpltKLPKTGVHRATFLLESVVNLHLNLQRHGQRLHVFHGPTEEIFKHLCVEYQIKFVCAFSEVCSQELRLDERVRAVLATNGVQLRLYWGFTLYHLDDLPADLMRRFpKTYSAFRRLVEERSRVRaEVRCP-EDGCWSPPPTSGSAHASATRLPTLAELGLCVDGQaasrvderapVAWVGGEQAALGWVQEYIWRrdgLSRQYVGATNtmtegkcAIGAESTTKLSPWLAHGCLSARTLHA-EVEAYENARGKSKG--TYWLKHELIWRDFLRFGALAWgDEIFKlDGIDGGLRGISWErgpDARDALQRWIQGGTGYPFVDAFMRELAATGYTTHCGRECACWFLVRDLALDWRLGGEYFESILIDYEPSANWGNWAYRIATTAPraPptfnEPVRTTEMLLWAQQHDPHALHVKRWLPELACL 502
                 6789**856***************************96541111114445567899****************************************************999***************************9999998777663689***99999988875157777.556788999999999**************988752211111111233469****9999998744121234555444411111005567899****************976.57899999987543..344578********996555414443314556677788887333467899**************************9999999*************************************987665431122333577777777889*****************976 PP

>> TIGR02766  crypt_chrom_pln: cryptochrome, plant family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.7   0.3     1e-26   1.1e-23       3     444 ..      40     512 ..      38     520 .. 0.70

  Alignments for each domain:
  == domain 1    score: 81.7 bits;  conditional E-value: 1e-26
   TIGR02766   3 vvwfr.rdlrvednpalaaaareg.evlpvfvw.....apeeegqfypgrvsr.wwlkqslahldqslkslgaklvlkrs.edtvaalldvvkstgatklvfnhlydpvslvrdhkvkeklaakgisvqsfnadllyepwevvdekg....kaftsfaaywekclelpida.spllppkklvpvta...sedvsacsvddlvleddsekss..nallarawspgwsnadklleefi......ekqlleys...knrkk.vdsastsllspylhfgevsvrkvfqlvrlkqivwanegnseaeesvelflr.siglreysrylsfnf..pfsheksllahlkffpwkv...deekfkawrqgrtgyplvdagmrelwatgwlhdrirvvvssfavkvlllpwkwgmkyfwdtlldadlesdilgwqy.isgslpdg....reldrldnpelegakydpegeyvrrwlpelarlptewihhpwd 444
                 +vw +  dlr++d  + + a   g +v+ +fv+     ap    +     v r  +l +s+ +l+  l++ g +l + +  ++ +   l +v+        f  +     l  d++v+ +la++g+ ++ + +  ly   ++ ++      k++++f    e    +  +  +p    +   p ++   + + +  +  +l+l  d + +s  +     aw  g + a   ++e+i      ++q +  +    ++k  + + st+ lsp+l  g +s r ++  v      +   +n  ++   +++l+  +  r++ r+ ++ +   + +   + + l+   w+      + ++ w qg tgyp+vda mrel atg++ +  r     f+v+ l l w+ g  yf  +l+d +  ++   w y i+ + p +    +e  r  +  l  +++dp+  +v+rwlpela lp+     pw 
  MMETSP1137-20121227|9313_1  40 IVWHKcTDLRLHDHETSSIAHATGlPVIHLFVFdpfwfAPLPLTKLPKTGVHRaTFLLESVVNLHLNLQRHGQRLHVFHGpTEEIFKHL-CVEYQIKFVCAFSEVC-SQELRLDERVRAVLATNGVQLRLYWGFTLYHLDDLPADLMrrfpKTYSAFRRLVEERSRVRAEVrCPEDGCWSPPPTSGsahASATRLPTLAELGLCVDGQAASrvDERAPVAWVGGEQAALGWVQEYIwrrdglSRQYVGATntmTEGKCaIGAESTTKLSPWLAHGCLSARTLHAEVEA----Y---ENARGKSKGTYWLKhELIWRDFLRFGALAWgdEIFKLDGIDGGLRGISWERgpdARDALQRWIQGGTGYPFVDAFMRELAATGYTTHCGRECACWFLVRDLALDWRLGGEYFESILIDYEPSANWGNWAYrIATTAPRApptfNEPVRTTEMLLWAQQHDPHALHVKRWLPELACLPAAIALEPWR 512
                 89987469***999998888888889999999611112455555554444554268999*************99977654144444444.4444333333444443.345778************************966666665500005556666665554444444434444445555554411133444456677777776666651144566799999999999999998432111233333221112223314567999**************99876643....2...2333444445555426889*****96655511567778999********973323578999********************************************************************966777665422227888999999**************************9999996 PP

>> TIGR00591  phr2: deoxyribodipyrimidine photolyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.0     0.062        63      24     127 ..      40     147 ..      27     161 .. 0.62
   2 ?    8.0   0.0   0.00032      0.33     214     283 ..     252     330 ..     228     353 .. 0.70

  Alignments for each domain:
  == domain 1    score: 0.5 bits;  conditional E-value: 0.062
   TIGR00591  24 vvywmsrdqrvqdnwaliyaqelalkeklPlavvfcl.........vdkfldatirhykfllkGlrevakelkeldipfhlllgsakevlpkfveekkaaavvtDfsplriik 127
                 +v+    d r++d  +     ++a ++ lP++  f +         + k +++ + + +fll+ + +++ +l++ + ++h+ +g ++e   ++  e ++ + v+ fs +  ++
  MMETSP1137-20121227|9313_1  40 IVWHKCTDLRLHDHET----SSIAHATGLPVIHLFVFdpfwfaplpLTKLPKTGVHRATFLLESVVNLHLNLQRHGQRLHVFHGPTEEIFKHLCVEYQI-KFVCAFSEVCSQE 147
                 4444456777777543....344455555555444331111111123456677788999************************9888888877776665.4566666665554 PP

  == domain 2    score: 8.0 bits;  conditional E-value: 0.00032
   TIGR00591 214 evkevelakpGtkaglevleefiskr..L.klfeekrndPn.......kdalsnlsPylhfGqlsaqrvalevkrarsae 283
                 e ++v +  +G++a+l  ++e+i +r  L +++    n  +       +++  +lsP+l +G lsa+ +  ev+   +a+
  MMETSP1137-20121227|9313_1 252 ERAPVAW-VGGEQAALGWVQEYIWRRdgLsRQYVGATNTMTegkcaigAESTTKLSPWLAHGCLSARTLHAEVEAYENAR 330
                 5667778.8999999999999998884423556555554431111111466789*************9999998654444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (772 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        91  (0.0221843); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.61u 0.19s 00:00:00.80 Elapsed: 00:00:00.65
# Mc/sec: 1567.62
//
Query:       MMETSP1137-20121227|9314_1  [L=571]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (571 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        74  (0.01804); expected 82.0 (0.02)
Passed bias filter:                       32  (0.00780107); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.20s 00:00:00.51 Elapsed: 00:00:00.37
# Mc/sec: 2036.91
//
Query:       MMETSP1137-20121227|9315_1  [L=229]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0017   15.1   0.0     0.0022   14.7   0.0    1.1  1  TIGR03204 pimC_large: pimeloyl-CoA dehydrogenase, large subunit


Domain annotation for each model (and alignments):
>> TIGR03204  pimC_large: pimeloyl-CoA dehydrogenase, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0   5.5e-07    0.0022     106     153 ..      81     128 ..      50     138 .. 0.79

  Alignments for each domain:
  == domain 1    score: 14.7 bits;  conditional E-value: 5.5e-07
   TIGR03204 106 eeqkkrflprianvddwwcqgfsepgsgsdlaslktkaekkgdkyiin 153
                 ++   r++pri    d+w  g+ +  +  d as+k    kkg    i 
  MMETSP1137-20121227|9315_1  81 QQAYTRYVPRIERGRDFWSTGLKKAIASGDWASIKKALXKKGSIDRIX 128
                 334589***********************************9865555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (229 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        97  (0.023647); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.22u 0.17s 00:00:00.39 Elapsed: 00:00:00.38
# Mc/sec: 795.41
//
Query:       MMETSP1137-20121227|9316_1  [L=54]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        43  (0.0104827); expected 82.0 (0.02)
Passed bias filter:                       37  (0.00901999); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.15s 00:00:00.27 Elapsed: 00:00:00.36
# Mc/sec: 197.98
//
Query:       MMETSP1137-20121227|9317_1  [L=543]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.3e-05   21.4   2.4    0.00043   18.2   0.3    2.5  2  TIGR03102 halo_cynanin: halocyanin domain
    0.00041   17.9   0.0    0.00095   16.8   0.0    1.6  1  TIGR02375 pseudoazurin: pseudoazurin
  ------ inclusion threshold ------
      0.034   12.4   0.0       0.11   10.8   0.0    1.9  1  TIGR02657 amicyanin: amicyanin


Domain annotation for each model (and alignments):
>> TIGR03102  halo_cynanin: halocyanin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.3   3.1e-07   0.00043      38     103 ..     298     364 ..     263     374 .. 0.73
   2 ?    2.3   0.0     0.027        37      40      90 ..     448     499 ..     435     510 .. 0.77

  Alignments for each domain:
  == domain 1    score: 18.2 bits;  conditional E-value: 3.1e-07
   TIGR03102  38 afdPaavrvdagttvvweWtGeGgghnvvseedgdle.eservsee...GttyeqtfeeegialyvCvph 103
                  ++ aa++++ g tv+w+Wt     hnv++ +++ +   + r+s        +e +f+++g++l+   ++
  MMETSP1137-20121227|9317_1 298 RWSSAALKINVGDTVKWTWTN---YHNVIETDEAGVIkGGGRTSGTpaiASSFELAFNDPGAYLFKSQTY 364
                 56789**************95...7****98776655255555543112678**********99976655 PP

  == domain 2    score: 2.3 bits;  conditional E-value: 0.027
   TIGR03102  40 dPaavrvdagttvvweWtGeGgghnvvseedgdle.eservseeGttyeqtf 90 
                  Pa+ +v++ t+   + t +G +h v  +++  +   s++++ +G +  ++f
  MMETSP1137-20121227|9317_1 448 RPAGGEVNTTTNRPMDSTEQGRTHGVYFKGEERFLrTSSSTTPSGYNAPYAF 499
                 68888999999999999*********99999888756777777776665555 PP

>> TIGR02375  pseudoazurin: pseudoazurin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0   6.9e-07   0.00095      13      80 ..     300     369 ..     291     393 .. 0.76

  Alignments for each domain:
  == domain 1    score: 16.8 bits;  conditional E-value: 6.9e-07
   TIGR02375  13 ePayikaapGDtvkFvptdkghnv.etikgmlPegaekfks..kineeltvkltkeGvygvkctphygmgm 80 
                   a +k+++GDtvk+  t+  hnv et +  + +g    ++   i  ++ + ++++G y++k++++++m+ 
  MMETSP1137-20121227|9317_1 300 SSAALKINVGDTVKWTWTNY-HNViETDEAGVIKGGGRTSGtpAIASSFELAFNDPGAYLFKSQTYLTMTC 369
                 5699***********99876.6652555444555544444312699*********************9974 PP

>> TIGR02657  amicyanin: amicyanin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   8.2e-05      0.11       8      81 ..     299     372 ..     295     374 .. 0.70

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 8.2e-05
   TIGR02657   8 yetpelrvkvgdavtwinrealphnvhf..kagvl..vekdlkgpmlkkeqayslkfteagtydyictphpfmkgkvv 81 
                 + +  l++ vgd+v w+ ++   hnv     agv   + +    p +    ++ l f+++g+y ++   +  m   v 
  MMETSP1137-20121227|9317_1 299 WSSAALKINVGDTVKWTWTN--YHNVIEtdEAGVIkgGGRTSGTPAIA--SSFELAFNDPGAYLFKSQTYLTMTCNVT 372
                 566789********999887..48875411567641133444456554..57999********999888877777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (543 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        93  (0.0226719); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.38u 0.13s 00:00:00.51 Elapsed: 00:00:00.49
# Mc/sec: 1462.65
//
Query:       MMETSP1137-20121227|9318_1  [L=315]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (315 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       125  (0.0304729); expected 82.0 (0.02)
Passed bias filter:                      101  (0.0246221); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.15s 00:00:00.40 Elapsed: 00:00:00.39
# Mc/sec: 1066.07
//
Query:       MMETSP1137-20121227|9319_1  [L=104]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (104 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        81  (0.0197465); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.14s 00:00:00.27 Elapsed: 00:00:00.27
# Mc/sec: 508.40
//
Query:       MMETSP1137-20121227|9320_1  [L=97]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (97 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        55  (0.0134081); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.12s 00:00:00.26 Elapsed: 00:00:00.27
# Mc/sec: 474.18
//
Query:       MMETSP1137-20121227|9321_1  [L=387]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (387 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        83  (0.020234); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.16s 00:00:00.44 Elapsed: 00:00:00.42
# Mc/sec: 1216.19
//
Query:       MMETSP1137-20121227|9322_1  [L=253]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.054   10.6  16.4      0.066   10.3  11.4    1.2  1  TIGR03752 conj_TIGR03752: integrating conjugative element protein, PFL_4705 family
       0.46    7.0   9.4       0.54    6.7   6.5    1.1  1  TIGR03895 protease_PatA: cyanobactin maturation protease, PatA/PatG family
        1.4    5.1   8.5        3.9    3.7   6.2    1.4  2  TIGR04074 bacter_Hen1: 3' terminal RNA ribose 2'-O-methyltransferase Hen1
        1.4    5.7  18.8        1.6    5.6  13.0    1.1  1  TIGR01628 PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family
        2.9    4.1  20.7        3.7    3.7  14.4    1.0  1  TIGR03319 YmdA_YtgF: conserved hypothetical protein YmdA/YtgF
        7.5    3.1  11.3        9.2    2.8   7.8    1.0  1  TIGR00867 deg-1: degenerin


Domain annotation for each model (and alignments):
>> TIGR03752  conj_TIGR03752: integrating conjugative element protein, PFL_4705 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3  11.4   9.6e-05     0.066      76     167 ..      40     141 ..      13     202 .. 0.50

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 9.6e-05
   TIGR03752  76 aklekeNeklkkenerlkkreesvder..iqqaleaekkelkkekeqlkeeqakleelldelqkkle..........dvaaekesseedlpvglGleegdkaqs 167
                 ++ ++e +k + ++e+l+++++++ ++  +qq++ + +++ +++++q++++q+++++ ++++q + +           +  ++ ++ee l   lGl+++ +a +
  MMETSP1137-20121227|9322_1  40 SNAQAEQQK-RIQQEKLRQQQQQILQQqaLQQQMLK-QQQQQQQQQQQRRQQQQMQQPSAQQQMREQelaqmlglagASGXKAGGQEEALMRMLGLSSAPSAGA 141
                 333332222.22344444444444332112222222.2222222222233333333333333333333445555553344444444444555556655555554 PP

>> TIGR03895  protease_PatA: cyanobactin maturation protease, PatA/PatG family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   6.5   0.00079      0.54     242     336 ..      20     111 ..       9     166 .. 0.61

  Alignments for each domain:
  == domain 1    score: 6.7 bits;  conditional E-value: 0.00079
   TIGR03895 242 ekeveeasgaevesaaeseteaipaaeaeeaasvsiesaaaaekaakaaaeielsaaalaaaissaavsakasegvtssaasselaeaqlvYalG 336
                 +++++ ++  ++++ +++ +++++a++++  ++++  + ++ +  +++a ++++ ++++ +  ++++  +++++++++sa+++ + e++l+  lG
  MMETSP1137-20121227|9322_1  20 KEQEQLKQLLGLKGGSKQGSSNAQAEQQKRIQQEKLRQQQQ-QILQQQALQQQMLKQQQ-QQQQQQQQRRQQQQMQQPSAQQQ-MREQELAQMLG 111
                 34444455566666666666666665554444444444333.33333333333333333.33333333334567778887776.55666666666 PP

>> TIGR04074  bacter_Hen1: 3' terminal RNA ribose 2'-O-methyltransferase Hen1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   6.2    0.0056       3.9     216     284 ..      46     116 ..      35     136 .. 0.68
   2 ?   -3.0   0.0      0.58     4e+02      31      66 ..     203     239 ..     199     243 .. 0.72

  Alignments for each domain:
  == domain 1    score: 3.7 bits;  conditional E-value: 0.0056
   TIGR04074 216 erelitrrylkrrrs..lveealerLaeeeeaeeeeeeeeeeeeeekekkvslaeqRleavvaalresgar 284
                 ++++i +  l+++++  l ++al++ + ++++++++++++++++++ +++   ++ R + + ++l  +ga 
  MMETSP1137-20121227|9322_1  46 QQKRIQQEKLRQQQQqiLQQQALQQQMLKQQQQQQQQQQQRRQQQQMQQPSAQQQMREQELAQMLGLAGAS 116
                 56678888887665433789999987777777777777666677777777777777777777777666654 PP

  == domain 2    score: -3.0 bits;  conditional E-value: 0.58
   TIGR04074  31 svgkahvfYPease.erctvallldvDpvelvRgkkk 66 
                 ++g+  vf Pe  e e++t ++ l v  ++  R++++
  MMETSP1137-20121227|9322_1 203 PHGQKGVFXPEGREdEEATLVVPLCVPHLKTQRASRR 239
                 5788899999976426788888888888887777665 PP

>> TIGR01628  PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6  13.0    0.0023       1.6     397     465 ..      38     104 ..      11     186 .. 0.49

  Alignments for each domain:
  == domain 1    score: 5.6 bits;  conditional E-value: 0.0023
   TIGR01628 397 isgrhqaaqqqavvtqavkqqlasqplnfkinqmmlstqnpskpeapnalaqlaqqrlqaqgrrnlnnr 465
                  s + qa+qq+ +++++ +qq ++  ++   +q+ml++q+++++++ +  +q++ q++ aq  ++++++
  MMETSP1137-20121227|9322_1  38 GSSNAQAEQQKRIQQEKLRQQQQQILQQQALQQQMLKQQQQQQQQQQQRRQQQQMQQPSAQ--QQMREQ 104
                 2222233333333333333332222222222333333333322222111111111111111..111111 PP

>> TIGR03319  YmdA_YtgF: conserved hypothetical protein YmdA/YtgF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7  14.4    0.0054       3.7      37     137 ..      14     111 ..       9     133 .. 0.69

  Alignments for each domain:
  == domain 1    score: 3.7 bits;  conditional E-value: 0.0054
   TIGR03319  37 iieeakkeaeakkkealleakeevkklreelekelkerrkelqklekrlkqkeekldrkkeklekkeeelekkekeleekekeleekeeeleellkeqkee 137
                  +e+ +ke e+ k+   l+  +++ +  +++e++ + ++++l+++++++ q++ +l++++  l++++++ ++++++ ++++ +  + +++++e++  q   
  MMETSP1137-20121227|9322_1  14 EMEKLRKEQEQLKQLLGLKGGSKQGSSNAQAEQQKRIQQEKLRQQQQQILQQQ-ALQQQM--LKQQQQQQQQQQQRRQQQQMQQPSAQQQMREQELAQMLG 111
                 56778899999999999999999999999999999999999*99999999875.677777..555555555555544444444444444444444444444 PP

>> TIGR00867  deg-1: degenerin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   7.8     0.013       9.2     103     174 ..      36     100 ..      11     121 .. 0.49

  Alignments for each domain:
  == domain 1    score: 2.8 bits;  conditional E-value: 0.013
   TIGR00867 103 kkseaeekevkaerklkekasqkklkekgkkeleeavfelafsqclckseekssereekesekkeeestksp 174
                 k+ ++++++++ +r ++ek +q++++  +++ l++++ +++++q++ +++  ++++ ++ s+++       +
  MMETSP1137-20121227|9322_1  36 KQGSSNAQAEQQKRIQQEKLRQQQQQILQQQALQQQMLKQQQQQQQQQQQRRQQQQMQQPSAQQ-------Q 100
                 3333444444444455555555555555555566555555555555544433333333333221.......1 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (253 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                      1075  (0.262067); expected 82.0 (0.02)
Passed bias filter:                      410  (0.0999512); expected 82.0 (0.02)
Passed Vit filter:                       103  (0.0251097); expected 4.1 (0.001)
Passed Fwd filter:                        17  (0.00414432); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.53u 0.21s 00:00:00.74 Elapsed: 00:00:00.65
# Mc/sec: 513.74
//
Query:       MMETSP1137-20121227|9323_1  [L=242]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (242 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        52  (0.0126767); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.14s 00:00:00.34 Elapsed: 00:00:00.35
# Mc/sec: 912.61
//
Query:       MMETSP1137-20121227|9324_1  [L=467]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.9e-14   50.9   0.0      6e-10   36.7   0.0    2.5  2  TIGR01628 PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family
    4.4e-13   46.9   0.0    4.9e-09   33.5   0.0    2.2  2  TIGR01622 SF-CC1: splicing factor, CC1-like family
      8e-08   30.0   0.0    0.00013   19.5   0.0    2.5  2  TIGR01661 ELAV_HUD_SF: ELAV/HuD family splicing factor
     0.0017   14.7   0.0     0.0047   13.3   0.0    1.5  2  TIGR01642 U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor
     0.0066   13.1   0.1      0.049   10.2   0.0    2.1  2  TIGR01648 hnRNP-R-Q: hnRNP-R, Q splicing factor family


Domain annotation for each model (and alignments):
>> TIGR01628  PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.7   0.0   7.3e-13     6e-10     279     358 ..     293     372 ..     228     381 .. 0.92
   2 !   11.6   0.0   2.9e-05     0.024     288     339 ..     387     437 ..     371     447 .. 0.55

  Alignments for each domain:
  == domain 1    score: 36.7 bits;  conditional E-value: 7.3e-13
   TIGR01628 279 rkekaqgvNlYvkNlddtvddekLrelFeefGeitSakvmldekekSkgFGFVcfssqeeAnkAvtelhgkilngkPLyv 358
                 r+e + g+ +Yv Nl +     +L+elF +fGe+  ++v + e ++ +gFG V  +  e+A++A++ l  ++l+++PL +
  MMETSP1137-20121227|9324_1 293 RQELHPGKRVYVGNLPPDSGWRELQELFLKFGEVLHVQVPVTEAGRPRGFGVVELAATEAATAAMRGLAKTVLHRHPLVL 372
                 456788999********************************************************************975 PP

  == domain 2    score: 11.6 bits;  conditional E-value: 2.9e-05
   TIGR01628 288 lYvkNlddtvddekLrelFeefGeitSakvmldekekSkgFGFVcfssqeeA 339
                 lYv Nl  +v  + Lr +  + G++ S+ v ++ +++  gF +V   s++eA
  MMETSP1137-20121227|9324_1 387 LYVGNLAASVRAQALRLHL-RLGDVASVTVPTSSSGRPLGFAWVQLGSAQEA 437
                 4555555555544444332.44555555555555555555555544444444 PP

>> TIGR01622  SF-CC1: splicing factor, CC1-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.5   0.0     6e-12   4.9e-09     180     279 ..     263     358 ..     252     363 .. 0.78
   2 !   11.1   0.0   3.7e-05      0.03     218     275 ..     383     438 ..     374     454 .. 0.85

  Alignments for each domain:
  == domain 1    score: 33.5 bits;  conditional E-value: 6e-12
   TIGR01622 180 ltG.qkllgvPvivqaseAEKNraakaatelsgdipnsiadlkLYvGnlhfnitEqeLrqiFepFGeielvqlqkDpetGrskGyGFiqFsdaeeakeAle 279
                 ++G  ++   Pv   +  A   r a++    +  +p     +++YvGnl  +    eL+++F  FGe+++vq++   e+Gr +G+G ++   +e a +A+ 
  MMETSP1137-20121227|9324_1 263 AAGaSRFTSEPVAASQLWAAEHRGAATGDARQELHP----GKRVYVGNLPPDSGWRELQELFLKFGEVLHVQVPVT-EAGRPRGFGVVELAATEAATAAMR 358
                 555246778888765555555555554555565555....89********************************96.667**************9999976 PP

  == domain 2    score: 11.1 bits;  conditional E-value: 3.7e-05
   TIGR01622 218 adlkLYvGnlhfnitEqeLrqiFepFGeielvqlqkDpetGrskGyGFiqFsdaeeak 275
                 +   LYvGnl  ++  q Lr +    G++ +v ++  +  Gr  G+ ++q   a+ea 
  MMETSP1137-20121227|9324_1 383 GGNVLYVGNLAASVRAQALR-LHLRLGDVASVTVPTSSS-GRPLGFAWVQLGSAQEAA 438
                 5567***************9.67789*********9776.5*********99998886 PP

>> TIGR01661  ELAV_HUD_SF: ELAV/HuD family splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.0   1.6e-07   0.00013     206     338 ..     236     368 ..     185     380 .. 0.60
   2 !    8.0   0.0    0.0005      0.41     266     324 ..     381     438 ..     371     453 .. 0.87

  Alignments for each domain:
  == domain 1    score: 19.5 bits;  conditional E-value: 1.6e-07
   TIGR01661 206 aplhkaaakfrlsaldflavlakrlqqhavaqqaaaqraspl.aadgavaglaagaqiaa.....sdgagycifvynlspdtdeavl.qlfgpfGavqsvkiirdlttnkckGygfvsmtnydeaalailslnGytlgnr 338
                 a++  a+ ++  s+ld   v +      a a++ ++++++     ++   g a      +     +   g  ++v nl pd+    l  lf +fG v  v++     + + +G+g v ++  + a+ a++ l  + l  +
  MMETSP1137-20121227|9324_1 236 ASASIAVRRLTGSNLDGAMVTVSLAGGAAGASRFTSEPVAASqLWAAEHRGAA------TgdarqELHPGKRVYVGNLPPDSGWRELqELFLKFGEVLHVQVPVTE-AGRPRGFGVVELAATEAATAAMRGLAKTVLHRH 368
                 33333344444444443333322222222222222222211101112222222......1334443345899***********998845************96554.899*********************998877655 PP

  == domain 2    score: 8.0 bits;  conditional E-value: 0.0005
   TIGR01661 266 dgagycifvynlspdtdeavlqlfgpfGavqsvkiirdlttnkckGygfvsmtnydeaa 324
                    g  ++v nl++    ++l+l  ++G v sv +     + +  G+++v +   +eaa
  MMETSP1137-20121227|9324_1 381 ALGGNVLYVGNLAASVRAQALRLHLRLGDVASVTVPTSS-SGRPLGFAWVQLGSAQEAA 438
                 345899***************************998877.9999********9999997 PP

>> TIGR01642  U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0      0.22   1.8e+02     329     373 ..     214     260 ..     207     296 .. 0.71
   2 !   13.3   0.0   5.8e-06    0.0047     296     365 ..     299     367 ..     270     382 .. 0.86

  Alignments for each domain:
  == domain 1    score: -1.9 bits;  conditional E-value: 0.22
   TIGR01642 329 iKdlatGls..KGyaFceykdssvtdlAiaaLnGiklgdkkLnvkrA 373
                 +K+l++G       aF     +  + +A+  L G +l + +++v  A
  MMETSP1137-20121227|9324_1 214 VKNLNEGTTweSVEAFLSTASPASASIAVRRLTGSNLDGAMVTVSLA 260
                 66666665411334777777788888888888888887777777666 PP

  == domain 2    score: 13.3 bits;  conditional E-value: 5.8e-06
   TIGR01642 296 edklyignLPldlkddqvkeLLesFGdLkaFnliKdlatGlsKGyaFceykdssvtdlAiaaLnGiklgd 365
                  +++y+gnLP d +   ++eL  +FG+++  + +  ++ G  +G++ +e   +  +  A+ +L   +l  
  MMETSP1137-20121227|9324_1 299 GKRVYVGNLPPDSGWRELQELFLKFGEVLHVQ-VPVTEAGRPRGFGVVELAATEAATAAMRGLAKTVLHR 367
                 589**************************999.567899**********999999999999987666655 PP

>> TIGR01648  hnRNP-R-Q: hnRNP-R, Q splicing factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0      0.14   1.1e+02     272     305 ..     228     261 ..     218     278 .. 0.84
   2 !   10.2   0.0     6e-05     0.049      58     119 ..     299     360 ..     286     367 .. 0.93

  Alignments for each domain:
  == domain 1    score: -0.9 bits;  conditional E-value: 0.14
   TIGR01648 272 afvhfedredavkamdelnGkeleGseievtlak 305
                 af+   +   a  a+  l G +l+G  + v la 
  MMETSP1137-20121227|9324_1 228 AFLSTASPASASIAVRRLTGSNLDGAMVTVSLAG 261
                 56666666778889999***********999995 PP

  == domain 2    score: 10.2 bits;  conditional E-value: 6e-05
   TIGR01648  58 GcevfvGkiPrdlyedelvPlfekvGkiyelrlmmdldGknrGyafvtfcnkeeakeavkel 119
                 G  v+vG +P d    el  lf k G++ ++++ +   G+ rG+  v  +  e+a  a++ l
  MMETSP1137-20121227|9324_1 299 GKRVYVGNLPPDSGWRELQELFLKFGEVLHVQVPVTEAGRPRGFGVVELAATEAATAAMRGL 360
                 789*******************************************************9976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (467 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       111  (0.02706); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.44u 0.16s 00:00:00.60 Elapsed: 00:00:00.62
# Mc/sec: 994.18
//
Query:       MMETSP1137-20121227|9325_1  [L=291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (291 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       229  (0.0558264); expected 82.0 (0.02)
Passed bias filter:                       97  (0.023647); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.17s 00:00:00.43 Elapsed: 00:00:00.36
# Mc/sec: 1066.91
//
Query:       MMETSP1137-20121227|9326_1  [L=347]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      2e-06   25.0   0.0    2.5e-06   24.6   0.0    1.2  1  TIGR04180 EDH_00030: NAD dependent epimerase/dehydratase, LLPSF_EDH_00030 family
    0.00082   16.4   0.0     0.0012   15.8   0.0    1.2  1  TIGR01181 dTDP_gluc_dehyt: dTDP-glucose 4,6-dehydratase
  ------ inclusion threshold ------
      0.034   11.6   0.0      0.052   10.9   0.0    1.3  1  TIGR01777 yfcH: TIGR01777 family protein


Domain annotation for each model (and alignments):
>> TIGR04180  EDH_00030: NAD dependent epimerase/dehydratase, LLPSF_EDH_00030 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.6   0.0   1.8e-09   2.5e-06     139     265 ..     150     275 ..     134     312 .. 0.84

  Alignments for each domain:
  == domain 1    score: 24.6 bits;  conditional E-value: 1.8e-09
   TIGR04180 139 lqaqsPysaskigadqlalsfyrsfelPvaivrPfntyGPrqsaraviPtiitqilsgkkkiklGslsPtrdfnyvkdtvegfiavaesdkavGevinigsnfeisigdtvkliaeilgkeveivtd 265
                   a s  +a k +  + a+     + lP +  rP   yGP+q  ++ + +   ++  g+     G+ +    +++ +d ++ + a    +kavGev+n+++ + is +++v+l  +++g+  +i + 
  MMETSP1137-20121227|9326_1 150 FGAISETCAVKSTGQRQAEELLGELGLPFTCFRPQYIYGPKQG-KSYLSCFFERLSRGRPVYVPGDGTQMVTMTHAADNAAMVAAAIGNSKAVGEVFNCATSKLISYDNLVSLCGSAVGVPADIRHY 275
                 5566777889999999999999999*****************7.67899*******************************9999999999*********************9999888888777643 PP

>> TIGR01181  dTDP_gluc_dehyt: dTDP-glucose 4,6-dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0   8.6e-07    0.0012     139     302 ..     144     315 ..     131     324 .. 0.72

  Alignments for each domain:
  == domain 1    score: 15.8 bits;  conditional E-value: 8.6e-07
   TIGR01181 139 ftettplaPssPysaskaasdllvrayartyglpvlitrcsnnyGpyqfpekliPllitnalagkklpvyGdGqqvrDwlyveDhcraielvl.ekgrvgevyniggeeertnlevvkiilelldk.......dedlieyvedrpG....hDrryaldaskikreLgwkpkvtfee 302
                 + e+ ++   s   a k++++   +      glp +  r+   yGp q     +  +  +  +g+++ v GdG+q+    ++ D++  + + + +   vgev+n ++ +  +  ++v++  + ++        d +    ve  +G    +D  + + ++k ++ Lg++pk+++e+
  MMETSP1137-20121227|9326_1 144 TPEKGDFGAISETCAVKSTGQRQAEELLGELGLPFTCFRPQYIYGPKQGK-SYLSCFFERLSRGRPVYVPGDGTQMVTMTHAADNAAMVAAAIgNSKAVGEVFNCATSKLISYDNLVSLCGSAVGVpadirhyDPKA---VEVPKGffpfRDTPFFVSVDKATQLLGFEPKHSIED 315
                 5566666666666777777777777777788999999999999***9865.56678999**************************99998766155679*******9999999899888877777633433222222...333333222267777777777777777777777776 PP

>> TIGR01777  yfcH: TIGR01777 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   3.8e-05     0.052     189     244 ..     213     269 ..     174     280 .. 0.86

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 3.8e-05
   TIGR01777 189 GsGrqwlsWihleDlvklilfaleneevsG.vvNataPepvrnkefakalakalhrp 244
                 G+G+q++   h +D ++++  a+ n+++ G v+N++  + ++  ++++  ++a++ p
  MMETSP1137-20121227|9326_1 213 GDGTQMVTMTHAADNAAMVAAAIGNSKAVGeVFNCATSKLISYDNLVSLCGSAVGVP 269
                 9************************99999678999988888888888777777655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (347 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        74  (0.01804); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.28u 0.15s 00:00:00.43 Elapsed: 00:00:00.35
# Mc/sec: 1308.58
//
Query:       MMETSP1137-20121227|9327_1  [L=215]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.2e-38  129.5   0.0    2.8e-38  129.1   0.0    1.1  1  TIGR00231 small_GTP: small GTP-binding protein domain
  ------ inclusion threshold ------
      0.016   12.0   0.0       0.19    8.5   0.0    2.0  2  TIGR03594 GTPase_EngA: ribosome-associated GTPase EngA
      0.029   11.3   0.0      0.045   10.6   0.0    1.5  1  TIGR00450 mnmE_trmE_thdF: tRNA modification GTPase TrmE


Domain annotation for each model (and alignments):
>> TIGR00231  small_GTP: small GTP-binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  129.1   0.0   2.1e-41   2.8e-38       1     163 [.      23     178 ..      23     179 .. 0.88

  Alignments for each domain:
  == domain 1    score: 129.1 bits;  conditional E-value: 2.1e-41
   TIGR00231   1 tkeikivivGhvdvGKstLlnsllknkisiteskpgvtrdyvteqieedGktykvnllDTaGqedfdairrlyvreverslevvdivilvldveeglekqtkeiiheakkkgvpiilvvnKiDlkddlktkvkslfaklnaepiielsaetgknidklfklve 163
                 ++ +k+vivG+++vGK++Ll+s+++n  +++ + p+v+++y ++ +++dGk++ + l+DTaGqed+d++r+l++++++++l  ++++++  + e++ +k+ +e++h+++  gvp+ilv++K Dl++d    v++l++k+++++ +e+  e  k i +++k++e
  MMETSP1137-20121227|9327_1  23 MQNVKCVIVGDGAVGKTCLLISYTTNA-FPEDYIPTVFDNYSAN-VMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTDVFLVAFSLISR-ASXENVTQKWCPELKHHCP--GVPMILVGTKLDLRSD-ANTVAKLREKNQTAITFEEGLERAKQI-GATKYLE 178
                 6889***********************.***************8.********************************************.*******************..***************3.334555666666666666655555554.4777766 PP

>> TIGR03594  GTPase_EngA: ribosome-associated GTPase EngA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.0     0.023        31       4      58 ..      29      83 ..      20     100 .. 0.63
   2 ?    8.5   0.0   0.00014      0.19     286     345 ..     129     197 ..     125     210 .. 0.72

  Alignments for each domain:
  == domain 1    score: 1.2 bits;  conditional E-value: 0.023
   TIGR03594  4 aivGrpNVGKStLfNrlvkkrkAivedtpgvTRDrkygeaelkgkefi..liDTgGl 58
                +ivG   VGK  L+  +  + +A  ed+  +  D  ++++ ++gk+++  l DT+G 
  MMETSP1137-20121227|9327_1 29 VIVGDGAVGKTCLL--ISYTTNAFPEDYIPTVFDNYSANVMVDGKPINlgLWDTAGQ 83
                56777777777765..45555666666666666666666666665544224566665 PP

  == domain 2    score: 8.5 bits;  conditional E-value: 0.00014
   TIGR03594 286 gkalvivvNKwDlvkdekeleelkkele.........eklkflkfapivfiSAltgkgveklleaikev 345
                 g ++++v  K Dl +d+++ ++l+++ +         e+ k++  ++ +  SAlt+kg++++++++ +v
  MMETSP1137-20121227|9327_1 129 GVPMILVGTKLDLRSDANTVAKLREKNQtaitfeeglERAKQIGATKYLECSALTQKGLKNVFDEAIRV 197
                 56899999999999777777777766551111111223456677788999999*****99999988776 PP

>> TIGR00450  mnmE_trmE_thdF: tRNA modification GTPase TrmE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   3.3e-05     0.045     207     268 ..      23      84 ..      14     171 .. 0.90

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 3.3e-05
   TIGR00450 207 kdglklaivGktNvGKSSLlNallkkdraiVsdikGttRDvvEedleleGilvkl..lDtAGiR 268
                  + +k +ivG+  vGK  Ll  ++ +  a   d+  t  D   +++ ++G +++l   DtAG  
  MMETSP1137-20121227|9327_1  23 MQNVKCVIVGDGAVGKTCLL--ISYTTNAFPEDYIPTVFDNYSANVMVDGKPINLglWDTAGQE 84 
                 56799**************9..566788**********************99985438***954 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (215 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       124  (0.0302292); expected 82.0 (0.02)
Passed bias filter:                      121  (0.0294978); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.23u 0.18s 00:00:00.41 Elapsed: 00:00:00.46
# Mc/sec: 616.91
//
Query:       MMETSP1137-20121227|9330_1  [L=169]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.8e-10   37.0   0.9    9.5e-10   36.7   0.6    1.1  1  TIGR02753 sodN: superoxide dismutase, Ni
     0.0081   14.2   0.3      0.012   13.6   0.2    1.3  1  TIGR01550 DOC_P1: death-on-curing family protein


Domain annotation for each model (and alignments):
>> TIGR02753  sodN: superoxide dismutase, Ni
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.7   0.6   4.6e-13   9.5e-10      18     139 ..      40     167 ..      29     169 .] 0.84

  Alignments for each domain:
  == domain 1    score: 36.7 bits;  conditional E-value: 4.6e-13
   TIGR02753  18 vlahCDlPCgvyD.Pasarisaeavlamtkkllalkapsskd.adeqntfsrlvavkeeqaketkkeis.vlWtDyfkpehlekfPeLhelv...wkalkllsaakvnidkakaeelldavekideif 139
                 +  hC +PCg++D Pa   +  e   ++ k +++ ++ s+   a   n+ +r v  ke++a+ + +++s  +    +k e +e+  e  + +   + +l ++ ++k+ +d a+++ l +a+e + +++
  MMETSP1137-20121227|9330_1  40 ARNHCQVPCGIFDdPARVAMLKEDASTIRKAMVQINELSAAGgALSLNQATRWVMTKEDHAESIIENVSkYMLCQRVKKEIFETTAEYEQALvshHTVLAAAMKTKQVVDVAACDALDKAIEGVGKMY 167
                 567********954999999999999999999999999888767777999******************8458899***********99987623234555666789999*****99999999999987 PP

>> TIGR01550  DOC_P1: death-on-curing family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   0.2   6.1e-06     0.012      25      68 ..      93     137 ..      85     148 .. 0.85

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 6.1e-06
   TIGR01550  25 dlknkdtvlatleriseklsyees.ddlfelsAvllikliksHvF 68 
                  ++ +d +++++e++s+++  + + +++fe +A +  +l+  H  
  MMETSP1137-20121227|9330_1  93 VMTKEDHAESIIENVSKYMLCQRVkKEIFETTAEYEQALVSHHTV 137
                 57889999**********999876269****************75 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (169 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       186  (0.0453437); expected 82.0 (0.02)
Passed bias filter:                       98  (0.0238908); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.18u 0.17s 00:00:00.35 Elapsed: 00:00:00.32
# Mc/sec: 697.07
//
Query:       MMETSP1137-20121227|9331_1  [L=767]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.4e-06   23.6   0.1    0.00024   18.4   0.0    2.2  2  TIGR02427 protocat_pcaD: 3-oxoadipate enol-lactonase
    2.3e-05   21.3   0.0    3.2e-05   20.8   0.0    1.2  1  TIGR03556 photolyase_8HDF: deoxyribodipyrimidine photo-lyase, 8-HDF type
     0.0036   13.9   0.0     0.0047   13.6   0.0    1.1  1  TIGR02766 crypt_chrom_pln: cryptochrome, plant family
     0.0053   14.0   0.0      0.044   11.0   0.0    2.0  2  TIGR03695 menH_SHCHC: 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase
  ------ inclusion threshold ------
      0.012   12.8   0.0      0.023   11.9   0.0    1.4  1  TIGR02240 PHA_depoly_arom: poly(3-hydroxyalkanoate) depolymerase


Domain annotation for each model (and alignments):
>> TIGR02427  protocat_pcaD: 3-oxoadipate enol-lactonase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.0     3e-07   0.00024      41     123 ..     503     586 ..     485     603 .. 0.83
   2 ?    2.8   0.0     0.017        14     195     250 ..     694     752 ..     685     753 .. 0.74

  Alignments for each domain:
  == domain 1    score: 18.4 bits;  conditional E-value: 3e-07
   TIGR02427  41 rvlryDkrGHGlSdvpegpysiedl.addvlallDalgiekaavcGlSlGGliaqaLaarrpdrvealvlsntaakigtaesWe 123
                  v ++D  G G+S+ p+ +y+ +   a+ v  +++ ++ + ++++G S+GG ++++ a++ +   + lvl+nta  + ++e + 
  MMETSP1137-20121227|9331_1 503 DVYALDLVGFGRSETPALSYTQHLWeAQIVDFVMEVMEGRPVVLAGNSIGGGLSAGAASNLGPICRGLVLCNTAGVLVKPEEYI 586
                 5678899**************9987255566689999*************************************9887777665 PP

  == domain 2    score: 2.8 bits;  conditional E-value: 0.017
   TIGR02427 195 PtlviaGdeDgstPpelvreiadl..vpgarfaeiee.aaHlpnleqpeafaallrdfl 250
                 P+lv  G+ D+ + +  ++e a++  v  +++++i+  a+H p  e+p+++aa++ d+l
  MMETSP1137-20121227|9331_1 694 PVLVPQGELDPLSGAGRAQERAEAlrVLRPHVSVIRLpAGHCPHDEAPDEVAAAICDWL 752
                 77888888887777665555555412556666677655****************99987 PP

>> TIGR03556  photolyase_8HDF: deoxyribodipyrimidine photo-lyase, 8-HDF type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   0.0   3.9e-08   3.2e-05       4     132 ..     101     229 ..      98     296 .. 0.81

  Alignments for each domain:
  == domain 1    score: 20.8 bits;  conditional E-value: 3.9e-08
   TIGR03556   4 lfwhr..rdlrlsdnlglaaarqksakvvglfcldekilkaddiaparvayllgclqelqerykr.lgsellilrgdpvqllpklakaleakavyw.nldvepysrkrdravaaalkekgiavktawdqllhs 132
                 l+w     dlrl+d+ gl +a ++ a++  +f ld++  + +  a  r   l  +l +l+++ ++  g  l+  rg   +llp++a a +a+  y  + dv+   r  +r+  a l e g++++  w q l +
  MMETSP1137-20121227|9331_1 101 LLWFTgvSDLRLNDHPGLLKAATH-ARIAPVFILDDAHCRCKPPAVLR--QLHQALVDLDKNLQHdYGLPLIFRRGRASDLLPEIAIACGATVCYLpEDDVDGSMRAMQRTAGARLCESGVELE-RWSQSLRP 229
                 66664227*************987.689*********99998766655..68888999988887625667777789***************99997356899999***************9986.69988765 PP

>> TIGR02766  crypt_chrom_pln: cryptochrome, plant family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   0.0   5.8e-06    0.0047       3     128 ..     101     227 ..      99     310 .. 0.63

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 5.8e-06
   TIGR02766   3 vvwfr..rdlrvednpalaaaaregevlpvfvwapeeegqfypgrvsrwwlkqslahldqslks.lgaklvlkrsedtvaalldvvkstgatklvf.nhlydpvslvrdhkvkeklaakgisvqsfnadl 128
                 ++wf    dlr++d p l  aa +  + pvf+   + + +  p  v r  l+q+l +ld+ l+   g  l+ +r + +   l ++  + gat  +  +   d      + ++  +l++ g+ ++ +   l
  MMETSP1137-20121227|9331_1 101 LLWFTgvSDLRLNDHPGLLKAATHARIAPVFILD-DAHCRCKPPAVLR-QLHQALVDLDKNLQHdYGLPLIFRRGRAS-DLLPEIAIACGATVCYLpEDDVDGSMRAMQRTAGARLCESGVELERWSQSL 227
                 67886447************************75.5678999999998.599*********98538999999998754.333344445555544331222233333334455566666666666666655 PP

>> TIGR03695  menH_SHCHC: 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.0   0.0   5.4e-05     0.044      31     105 ..     504     576 ..     492     595 .. 0.82
   2 ?    0.3   0.0       0.1        82     230     251 ..     731     752 ..     711     753 .. 0.79

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 5.4e-05
   TIGR03695  31 vlalDLpgHGkskslkekeakdfeeaaqellkelleklkiekviLvGYSlGGRialalaleaperleglilesas 105
                 v alDL+g G+s++++    ++ +    ++++ ++e ++ ++v+L G S+GG +   +a +     +gl+l ++ 
  MMETSP1137-20121227|9331_1 504 VYALDLVGFGRSETPA--LSYTQHLWEAQIVDFVMEVMEGRPVVLAGNSIGGGLSAGAASNLGPICRGLVLCNTA 576
                 5689*********994..45666666778899999999***************9999999888888888887765 PP

  == domain 2    score: 0.3 bits;  conditional E-value: 0.1
   TIGR03695 230 eaGHnihlenpeafakileefl 251
                  aGH+ h e p++ a+++  +l
  MMETSP1137-20121227|9331_1 731 PAGHCPHDEAPDEVAAAICDWL 752
                 48************99998776 PP

>> TIGR02240  PHA_depoly_arom: poly(3-hydroxyalkanoate) depolymerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   2.8e-05     0.023      47     128 ..     497     578 ..     470     586 .. 0.85

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 2.8e-05
   TIGR02240  47 aldpeleviafdvpgvggsstprvpyrfp.glaklaarmldyldygqvnvigvswggalaqqfahdyperckklvlaataaga 128
                 a  p  +v a+d+ g g s tp+  y      a+++  +++ ++   v   g s gg l+   a +    c+ lvl+ ta   
  MMETSP1137-20121227|9331_1 497 AGTPMPDVYALDLVGFGRSETPALSYTQHlWEAQIVDFVMEVMEGRPVVLAGNSIGGGLSAGAASNLGPICRGLVLCNTAG-V 578
                 55677799******************755156899999999999999*****************************99864.3 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (767 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        75  (0.0182838); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.50u 0.14s 00:00:00.64 Elapsed: 00:00:00.83
# Mc/sec: 1219.71
//
Query:       MMETSP1137-20121227|9332_1  [L=343]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (343 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       140  (0.0341297); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.16s 00:00:00.43 Elapsed: 00:00:00.39
# Mc/sec: 1160.83
//
Query:       MMETSP1137-20121227|9333_1  [L=182]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (182 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        48  (0.0117016); expected 82.0 (0.02)
Passed bias filter:                       41  (0.00999512); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.14s 00:00:00.33 Elapsed: 00:00:00.41
# Mc/sec: 585.90
//
Query:       MMETSP1137-20121227|9334_1  [L=342]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (342 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        49  (0.0119454); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.16s 00:00:00.40 Elapsed: 00:00:00.32
# Mc/sec: 1410.63
//
Query:       MMETSP1137-20121227|9335_1  [L=351]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00061   16.5   0.0      0.001   15.8   0.0    1.3  1  TIGR00115 tig: trigger factor
  ------ inclusion threshold ------
       0.05   11.8   0.6      0.092   11.0   0.1    1.7  2  TIGR01683 thiS: thiamine biosynthesis protein ThiS


Domain annotation for each model (and alignments):
>> TIGR00115  tig: trigger factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0     5e-07     0.001     142     206 ..     240     314 ..     202     323 .. 0.79

  Alignments for each domain:
  == domain 1    score: 15.8 bits;  conditional E-value: 5e-07
   TIGR00115 142 vpverdaaekgDivtidfegkv.......dGeafeggka.edfelelg...sgqfipgfeeqlvGmkaGeekeikv 206
                 vp  r +a +gD + i +eg +       dG  + + ++ +  +++lg    gqf p  + +lvGm +Ge ++i+v
  MMETSP1137-20121227|9335_1 240 VPCSR-PASDGDLLEIAYEGRIaetgalfDGMDLAKRQGdSTLQFVLGkqpVGQFPPAWDVALVGMCVGERRTIDV 314
                 56666.**************888866666666666666545689****666689********************98 PP

>> TIGR01683  thiS: thiamine biosynthesis protein ThiS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.1   4.5e-05     0.092       2      26 ..     163     187 ..     162     192 .. 0.88
   2 ?   -3.6   0.0       1.5   3.1e+03      23      35 ..     336     348 ..     334     349 .. 0.80

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 4.5e-05
   TIGR01683   2 tvNGeeveveeettlaalleslgle 26 
                  vNG+ ve e+ +t++a+l++l+ +
  MMETSP1137-20121227|9335_1 163 AVNGQNVERESAQTVQAILKKLSGK 187
                 79*******************9865 PP

  == domain 2    score: -3.6 bits;  conditional E-value: 1.5
   TIGR01683  23 lgleprgvavevN 35 
                 l+++ +++a+  N
  MMETSP1137-20121227|9335_1 336 LQYDVQLIAINAN 348
                 7889999999887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (351 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       106  (0.0258411); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.28u 0.17s 00:00:00.45 Elapsed: 00:00:00.37
# Mc/sec: 1252.11
//
Query:       MMETSP1137-20121227|9336_1  [L=168]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.014   12.3   0.2        1.4    5.8   0.0    2.5  3  TIGR00163 PS_decarb: phosphatidylserine decarboxylase
       0.84    4.9   6.8       0.99    4.7   4.7    1.0  1  TIGR00956 3a01205: pleiotropic drug resistance family protein


Domain annotation for each model (and alignments):
>> TIGR00163  PS_decarb: phosphatidylserine decarboxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.0    0.0026       5.3     159     190 ..      16      47 ..      10      66 .. 0.74
   2 ?    5.8   0.0    0.0007       1.4     159     202 ..      76     119 ..      70     122 .. 0.87
   3 ?   -2.1   0.2      0.18   3.7e+02      58      79 ..     134     154 ..     127     162 .. 0.67

  Alignments for each domain:
  == domain 1    score: 3.9 bits;  conditional E-value: 0.0026
   TIGR00163 159 vGAtnvgsiklnfdkeiqtnereeivkavten 190
                  G tnv +++ ++dk +q  ++   ++a +  
  MMETSP1137-20121227|9336_1  16 SGSTNVPQLRSSWDKRLQQRAERAALQAAQRX 47 
                 699***************98777777776554 PP

  == domain 2    score: 5.8 bits;  conditional E-value: 0.0007
   TIGR00163 159 vGAtnvgsiklnfdkeiqtnereeivkavtenaeggvklvkGee 202
                  G tnv +++ ++dk +q  ++   ++a + + +  ++ vk ee
  MMETSP1137-20121227|9336_1  76 SGSTNVPQLRSSWDKRLQQRAERAALQAAQREVDEKIRSVKQEE 119
                 699****************9999999999999888888777665 PP

  == domain 3    score: -2.1 bits;  conditional E-value: 0.18
   TIGR00163  58 qvKGktyslkellgekskplvs 79 
                 + KG++y++   +++  k++++
  MMETSP1137-20121227|9336_1 134 KQKGMQYQVISNTSKI-KKMSK 154
                 5689999887777766.56655 PP

>> TIGR00956  3a01205: pleiotropic drug resistance family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   4.7   0.00048      0.99     333     417 ..      76     162 ..      60     167 .. 0.68

  Alignments for each domain:
  == domain 1    score: 4.7 bits;  conditional E-value: 0.00048
   TIGR00956 333 gyekkvprtakefekywrnspeyaelekeideylerveeekeke..aikesavakkskrtrkkskytvsfsqqvkyilaRellrlkg 417
                     +vp+  +   k+ ++  e+a+l++   e +e++ + k++e    +e + +k+ ++ + +++ ++s + ++k + +R+l+ +k+
  MMETSP1137-20121227|9336_1  76 SGSTNVPQLRSSWDKRLQQRAERAALQAAQREVDEKIRSVKQEErkRREEKEKKKEENKQKGMQYQVISNTSKIKKMSKRQLKNIKK 162
                 45567999999999999999999999865555555544444433103344444444455555566677999***********99986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (168 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       798  (0.194539); expected 82.0 (0.02)
Passed bias filter:                      238  (0.0580205); expected 82.0 (0.02)
Passed Vit filter:                        38  (0.00926377); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.27u 0.20s 00:00:00.47 Elapsed: 00:00:00.47
# Mc/sec: 471.79
//
Query:       MMETSP1137-20121227|9337_1  [L=190]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (190 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        66  (0.0160897); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.15s 00:00:00.32 Elapsed: 00:00:00.32
# Mc/sec: 783.69
//
Query:       MMETSP1137-20121227|9339_1  [L=140]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.3e-31  104.0   0.1    8.7e-31  103.6   0.0    1.2  1  TIGR00008 infA: translation initiation factor IF-1


Domain annotation for each model (and alignments):
>> TIGR00008  infA: translation initiation factor IF-1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  103.6   0.0   2.1e-34   8.7e-31       1      68 [.      70     138 ..      70     139 .. 0.95

  Alignments for each domain:
  == domain 1    score: 103.6 bits;  conditional E-value: 2.1e-34
   TIGR00008   1 kedkieleGkvveslpnamfrveleN.gvevlahisGkirknyiriLpgDkVkvelspYdltkGRIiyR 68 
                 k+d++eleG v+e+lpna+frv+l+  ++++lah+sGkirknyi+iL gD+V+ e+spYdltkGRI++R
  MMETSP1137-20121227|9339_1  70 KKDVLELEGVVLEALPNANFRVQLDEtEQVILAHVSGKIRKNYIKILVGDHVTCEISPYDLTKGRITFR 138
                 7899********************86267889************************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (140 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        99  (0.0241346); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.17u 0.12s 00:00:00.29 Elapsed: 00:00:00.28
# Mc/sec: 637.19
//
Query:       MMETSP1137-20121227|9340_1  [L=239]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (239 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        51  (0.012433); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.12s 00:00:00.32 Elapsed: 00:00:00.35
# Mc/sec: 901.30
//
Query:       MMETSP1137-20121227|9341_1  [L=443]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (443 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        97  (0.023647); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.12s 00:00:00.43 Elapsed: 00:00:00.60
# Mc/sec: 974.52
//
Query:       MMETSP1137-20121227|9342_1  [L=478]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (478 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       168  (0.0409556); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.15s 00:00:00.47 Elapsed: 00:00:00.66
# Mc/sec: 955.92
//
Query:       MMETSP1137-20121227|9343_1  [L=117]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0013   16.8   5.8     0.0024   16.0   4.0    1.6  1  TIGR03655 anti_R_Lar: restriction alleviation protein, Lar family


Domain annotation for each model (and alignments):
>> TIGR03655  anti_R_Lar: restriction alleviation protein, Lar family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   4.0   5.8e-07    0.0024       3      41 ..      34      69 ..      32     111 .. 0.81

  Alignments for each domain:
  == domain 1    score: 16.0 bits;  conditional E-value: 5.8e-07
   TIGR03655  3 pCPFCGgadvslregeddldeveivaveCktCgasgpve 41
                 CPFCG+++   ++ + +++  +   + C++C a+ +++
  MMETSP1137-20121227|9343_1 34 DCPFCGKTQCCSVKMNYENKIGT---ILCDACSAKYDAQ 69
                7*********5554444444444...56******99884 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (117 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       121  (0.0294978); expected 82.0 (0.02)
Passed bias filter:                      100  (0.0243784); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.16u 0.12s 00:00:00.28 Elapsed: 00:00:00.31
# Mc/sec: 498.15
//
Query:       MMETSP1137-20121227|9344_1  [L=352]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.7e-10   36.7   3.2    5.2e-09   32.8   2.2    2.0  1  TIGR02632 RhaD_aldol-ADH: rhamnulose-1-phosphate aldolase/alcohol dehydrogenase
      6e-10   36.8   2.7    3.1e-07   27.9   0.0    2.4  3  TIGR03971 SDR_subfam_1: oxidoreductase, SDR family
    1.5e-08   32.4   0.3    4.1e-05   21.2   0.0    2.5  2  TIGR01829 AcAcCoA_reduct: acetoacetyl-CoA reductase
    5.9e-08   30.5   0.2    1.2e-06   26.3   0.0    2.2  2  TIGR01830 3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase
    1.7e-07   28.9   0.8     0.0057   14.0   0.1    2.3  2  TIGR01832 kduD: 2-deoxy-D-gluconate 3-dehydrogenase
    2.2e-05   21.7   0.7     0.0051   13.9   0.0    2.4  2  TIGR01963 PHB_DH: 3-hydroxybutyrate dehydrogenase
    2.4e-05   21.7   0.7    0.00049   17.4   0.0    2.2  2  TIGR02415 23BDH: acetoin reductases
    0.00013   19.3   4.1     0.0018   15.5   0.1    2.1  2  TIGR03206 benzo_BadH: 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase
     0.0012   15.8   0.1     0.0025   14.8   0.1    1.6  1  TIGR02685 pter_reduc_Leis: pteridine reductase


Domain annotation for each model (and alignments):
>> TIGR02632  RhaD_aldol-ADH: rhamnulose-1-phosphate aldolase/alcohol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.8   2.2   1.2e-11   5.2e-09     409     672 ..      48     338 ..      33     341 .. 0.77

  Alignments for each domain:
  == domain 1    score: 32.8 bits;  conditional E-value: 1.2e-11
   TIGR02632 409 ekelarrvalvtGga..sGiGrevarrlvdeGahvvladldaeaaeavaaelvdkfGadkava..............................lkldvtdeeavkaafaevalayGGvdivvnn..aGiavskpleeteleeWdlnldilatGyflva..reaarllrkqglggnlvfiasknavvakknalaysaakaaeahlvrllaiela.elgirvntvaPdavl..rGsgifagewrekraaaygieadkleefykkrsllkrevlpediaeavfllasdklekttGliitvdaGvaa 672
                 + +la++va+v+G a  +G G ++++ l++ Ga + +           +    +kf +d+ +                                +    d  +++++ a+v  +yG +d++v +   G  v+kpl et+   +    +  a  y lv+  ++   ++++ g   +l +ias   +    +    s+akaa     r+la e + ++girvnt+    +     s+i +ge  +k+  + gi      ++ +  + l ++++++d+  a   l+s      tG ++ vd G++a
  MMETSP1137-20121227|9344_1  48 NVDLAGKVAFVAGVAdsTGYGWAICKALANAGATITVGTWPPVLGIFQKSLSSGKFDDDMILDdgskmviekiypldavfdeaefvpeevktnKRYAGLDGFSIAETAAKVGADYGKIDVLVHSlaNGPEVAKPLLETSRAGYLA--AASASSYSLVSlvQKFGPIMNEGGSVLSLTYIASEKVIPGYGG--GMSSAKAALESDTRTLAWEAGrKYGIRVNTISAGPLKsrAASAISKGE--KKSFIEVGI------DYSRANAPLAKDLYSDDVGTAAACLLSPLFGAITGITLYVDNGMHA 338
                 5689********9863369999************9987665443333333334566666666566666677**************888865554444456779999***************98533799*********9887754..5578888888843556689***************987765554..46899**************87469******985443300334444333..345555666......57778899***********************************986 PP

>> TIGR03971  SDR_subfam_1: oxidoreductase, SDR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.5   0.3   0.00056      0.26       1      31 [.      51      83 ..      51      87 .. 0.81
   2 ?   -3.1   0.0         2   9.2e+02      89      99 ..     160     170 ..     150     174 .. 0.74
   3 !   27.9   0.0   6.9e-10   3.1e-07     143     264 ..     213     336 ..     203     337 .. 0.80

  Alignments for each domain:
  == domain 1    score: 8.5 bits;  conditional E-value: 0.00056
   TIGR03971  1 leGkvalitGaar..GqGraeavrlaaeGadii 31
                l+Gkva+++G a   G G a   +la+ Ga i 
  MMETSP1137-20121227|9344_1 51 LAGKVAFVAGVADstGYGWAICKALANAGATIT 83
                79********99622666777779******985 PP

  == domain 2    score: -3.1 bits;  conditional E-value: 2
   TIGR03971  89 eefGrldvvva 99 
                 + +G++dv+v 
  MMETSP1137-20121227|9344_1 160 ADYGKIDVLVH 170
                 57899999985 PP

  == domain 3    score: 27.9 bits;  conditional E-value: 6.9e-10
   TIGR03971 143 knGGsiiivssvaglkalpgl.ahyaaakhGlvgltktlanela.eygirvnsihPtsvdtamiepeamrelfakreeaaraf.lpalpvsglvepedvadvvawlasdesryitGaqlavdaGa 264
                 ++GGs+++++  a+ k +pg  +  ++ak  l + t+tla e++ +ygirvn+i+   ++ +  ++ +  e  +  e  +  +  ++ p+   + ++dv  ++a l s+    itG  l vd+G+
  MMETSP1137-20121227|9344_1 213 NEGGSVLSLTYIASEKVIPGYgGGMSSAKAALESDTRTLAWEAGrKYGIRVNTISAGPLKSRAASAISKGEKKSFIEVGI-DYsRANAPLAKDLYSDDVGTAAACLLSPLFGAITGITLYVDNGM 336
                 579***************9762578999***************856*********9888877665333333222223333.332455777778999***************************96 PP

>> TIGR01829  AcAcCoA_reduct: acetoacetyl-CoA reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.8   0.0   0.00055      0.25       1      31 [.      54      86 ..      54     118 .. 0.86
   2 !   21.2   0.0   8.9e-08   4.1e-05      67     241 ..     153     337 ..     144     339 .. 0.78

  Alignments for each domain:
  == domain 1    score: 8.8 bits;  conditional E-value: 0.00055
   TIGR01829  1 rvalvtGg..lgGiGtaickrlakdGykvvanv 31
                +va+v+G   + G G aick+la++G ++  ++
  MMETSP1137-20121227|9344_1 54 KVAFVAGVadSTGYGWAICKALANAGATITVGT 86
                799**996225799************9997665 PP

  == domain 2    score: 21.2 bits;  conditional E-value: 8.9e-08
   TIGR01829  67 aavakveaelGpvdvlvnn..aGitrdavfkkmtkeqWeevidtnlnsvfnvtrpviegmlergfGriinissvnGlkGqfGqa.nysaakaGliGftkalaqega.kkgvtvnviaPGyiatemvkavredvlkk.ivaqiPvkrlgkp.......eeiaaavaflaseeagyvtGatlsvnGGly 241
                 ++ akv a+ G++dvlv +   G    + +   +++ + +  ++   s+ ++ ++    m e   G ++ ++ +   k   G     s+aka l   t++la e+  k+g+ vn+i+ G ++    +a+ +  +k+ i  +i   r  +p       +++++a a l s   g +tG tl v+ G++
  MMETSP1137-20121227|9344_1 153 ETAAKVGADYGKIDVLVHSlaNGPEVAKPLLETSRAGYLAAASASSYSLVSLVQKFGPIMNEG--GSVLSLTYIASEKVIPGYGgGMSSAKAALESDTRTLAWEAGrKYGIRVNTISAGPLKSRAASAISKGEKKSfIEVGIDYSRANAPlakdlysDDVGTAAACLLSPLFGAITGITLYVDNGMH 337
                 566788899999999998621355555666777777788888888888888888888888775..56777777777776666531589***************976257********************998877757778877776554444344489**********************998876 PP

>> TIGR01830  3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.0     0.059        27       6      27 ..      63      84 ..      56      89 .. 0.79
   2 !   26.3   0.0   2.6e-09   1.2e-06      63     238 ..     151     336 ..     108     337 .. 0.81

  Alignments for each domain:
  == domain 1    score: 2.2 bits;  conditional E-value: 0.059
   TIGR01830  6 asrgiGkaiakklakegakvvi 27
                 s g G ai k+la++ga++++
  MMETSP1137-20121227|9344_1 63 DSTGYGWAICKALANAGATITV 84
                36799**************987 PP

  == domain 2    score: 26.3 bits;  conditional E-value: 2.6e-09
   TIGR01830  63 vkelveeveeelgeidilvnn..AGitrDklllrmkeedwdevikvnLkgvfnvtkavlkkmikkrsGriinissvvgllGnagqa.nYaasKaGligltkslakElasr.nitvnavaPGfietdmteklsekvkkkile........qiplkrlgkpeevaaavafLasdeasyitGqvlkvdGGl 238
                 + e+ ++v +++g+id+lv +   G    k ll+ +   + +  +    ++  ++++    m +   G+++ ++ +++    +g     +++Ka l + t++la E +++ +i+vn+++ G +++   +++s+  kk++ e        + pl +   +++v +a+a L s     itG +l vd G+
  MMETSP1137-20121227|9344_1 151 IAETAAKVGADYGKIDVLVHSlaNGPEVAKPLLETSRAGYLAAASASSYSLVSLVQKFGPIMNE--GGSVLSLTYIASEKVIPGYGgGMSSAKAALESDTRTLAWEAGRKyGIRVNTISAGPLKSRAASAISKGEKKSFIEvgidysraNAPLAKDLYSDDVGTAAACLLSPLFGAITGITLYVDNGM 336
                 5667777888888888888753247777777888888888777777777777777777777765..89999999999988888865257899***************97559********************999887653222222227899999999****************************9 PP

>> TIGR01832  kduD: 2-deoxy-D-gluconate 3-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   0.0   1.6e-05    0.0073       2      33 ..      50      83 ..      49     121 .. 0.88
   2 !   14.0   0.1   1.3e-05    0.0057     154     245 ..     238     336 ..     148     339 .. 0.77

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 1.6e-05
   TIGR01832  2 sleGkvalvtGa..ntGlGqgiavglaeaGadiv 33
                +l+Gkva+v+G   +tG G +i+ +la+aGa i 
  MMETSP1137-20121227|9344_1 50 DLAGKVAFVAGVadSTGYGWAICKALANAGATIT 83
                799********744699999***********985 PP

  == domain 2    score: 14.0 bits;  conditional E-value: 1.3e-05
   TIGR01832 154 tasksavaGltkllanewa.kkginvnaiaPGyletnntealradekrn......aaileriPagrwGepedlagaavflassasdyvnGailavdGGw 245
                 +++k a+   t++la e   k+gi+vn+i+ G l++  + a+   ek++      ++  +  P ++   ++d++ aa  l s     ++G++l vd G 
  MMETSP1137-20121227|9344_1 238 SSAKAALESDTRTLAWEAGrKYGIRVNTISAGPLKSRAASAISKGEKKSfievgiDYSRANAPLAKDLYSDDVGTAAACLLSPLFGAITGITLYVDNGM 336
                 5689999999*******97257********************9999987322111222345677888889**************************996 PP

>> TIGR01963  PHB_DH: 3-hydroxybutyrate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.8   0.2    0.0033       1.5       2      30 ..      54      84 ..      53      88 .. 0.85
   2 !   13.9   0.0   1.1e-05    0.0051      64     253 ..     150     337 ..     105     339 .. 0.78

  Alignments for each domain:
  == domain 1    score: 5.8 bits;  conditional E-value: 0.0033
   TIGR01963  2 kvalvtGaa..sGiglaiakelaaaGakvvv 30
                kva+v G a  +G g ai k+la+aGa+++v
  MMETSP1137-20121227|9344_1 54 KVAFVAGVAdsTGYGWAICKALANAGATITV 84
                8999999763369999************987 PP

  == domain 2    score: 13.9 bits;  conditional E-value: 1.1e-05
   TIGR01963  64 eiadlieavaaefgsldiLvnn..AGiqhvapieefptekfekiiavnltsafhtiraalpimkkqgwG.riiniasvhglvasafKsaYvaaKHglvGltKvlAlEvA.etgitanaicPgyvrtpLvekqiadqaktrgiseeqvvkevllkkqptkrfvtveevaelalflasdaaaqitGqalsldgGwt 253
                 +ia++ ++v a++g++d+Lv     G    +p+ e   + + +  + +  s + ++++  pim++ g    + +ias +   +  +     +aK +l   t++lA E   + gi++n+i  g    pL ++  +  +k ++ s  +v  +   ++ p  + +  ++v+ +a+ l s    +itG +l +d G  
  MMETSP1137-20121227|9344_1 150 SIAETAAKVGADYGKIDVLVHSlaNGPEVAKPLLETSRAGYLAAASASSYSLVSLVQKFGPIMNEGGSVlSLTYIASEKVIPG--YGGGMSSAKAALESDTRTLAWEAGrKYGIRVNTISAG----PLKSRAASAISKGEKKSFIEVGIDYSRANAPLAKDLYSDDVGTAAACLLSPLFGAITGITLYVDNGMH 337
                 5788889*************85336999999***********9999999999***********99865445556666554444..456789****************86267*******988....77777777777777777778888888899999999999999999999999999999999999999975 PP

>> TIGR02415  23BDH: acetoin reductases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.1     0.034        15       1      29 [.      54      84 ..      54      92 .. 0.85
   2 !   17.4   0.0   1.1e-06   0.00049      73     251 ..     160     336 ..     106     338 .. 0.76

  Alignments for each domain:
  == domain 1    score: 2.7 bits;  conditional E-value: 0.034
   TIGR02415  1 kvalvtGaa..qGiGkaiaerLakdGfavav 29
                kva+v+G a   G G ai + La+ G  ++v
  MMETSP1137-20121227|9344_1 54 KVAFVAGVAdsTGYGWAICKALANAGATITV 84
                899***98733588999*********99988 PP

  == domain 2    score: 17.4 bits;  conditional E-value: 1.1e-06
   TIGR02415  73 eklGeldvlvnn..aGvalvtpileiteeeleklynvnvkgvlfGiqaaaekfkkl.khkGkiinaasiagvegspels.aysstkfavrgltqtaakeLakk.gitvnayaPGivktemreeideklaelagkeigekleefsseiklGresePedvaelvsflasedsdyitGqsilvdGGl 251
                 +++G++dvlv     G  + +p+le +       y     +  + + + ++kf    +++G ++  + ia+ +  p  +   ss+k a+ + t+t a e   k gi vn+ + G  k    + i + + +     i+ ++++   +  l +    +dv    + l s     itG ++ vd G+
  MMETSP1137-20121227|9344_1 160 ADYGKIDVLVHSlaNGPEVAKPLLETS----RAGYLAAASASSYSLVSLVQKFGPImNEGGSVLSLTYIASEKVIPGYGgGMSSAKAALESDTRTLAWEAGRKyGIRVNTISAGPLKSRAASAISKGEKK---SFIEVGIDYSRANAPLAKDLYSDDVGTAAACLLSPLFGAITGITLYVDNGM 336
                 566777777764213444555555443....3456666667777788888889875156699*************987526899**************9987637*********9999988888776543...3456667777777788889999****************************9 PP

>> TIGR03206  benzo_BadH: 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.1   0.5    0.0059       2.7       2      32 ..      52      84 ..      51      87 .. 0.84
   2 !   15.5   0.1   4.1e-06    0.0018      67     248 ..     151     336 ..     141     339 .. 0.81

  Alignments for each domain:
  == domain 1    score: 5.1 bits;  conditional E-value: 0.0059
   TIGR03206  2 kdkvaivtggg..ggiggaicrrfaeegakvav 32
                 +kva v+g +   g g aic+ +a+ ga ++v
  MMETSP1137-20121227|9344_1 52 AGKVAFVAGVAdsTGYGWAICKALANAGATITV 84
                579999999752269999************987 PP

  == domain 2    score: 15.5 bits;  conditional E-value: 4.1e-06
   TIGR03206  67 vdaavaaaeealgpvdvlvnn..agwdvlkpflktekaewerliainltgalymhhavlkgmverkag.rivniasdaarvgssgeavyaackgglvafsktlarelarh.gitvnvvcpgptdtalledvkseaekp.eklieaftra.iplgrlgkpddlagailflasddaafitgqvlsvsggl 248
                 +  + a +    g +dvlv     g +v kp+l+t +a +    +   +  + +     + m e ++   +  ias+    g  g    +  k  l + ++tla e  r+ gi vn +  gp ++     ++++ +k+   +   ++ra  pl +    dd+  a + l s   + itg  l v  g+
  MMETSP1137-20121227|9344_1 151 IAETAAKVGADYGKIDVLVHSlaNGPEVAKPLLETSRAGYLAAASASSYSLVSLVQKFGPIMNEGGSVlSLTYIASEKVIPGYGGG--MSSAKAALESDTRTLAWEAGRKyGIRVNTISAGPLKSRAASAISKGEKKSfIEVGIDYSRAnAPLAKDLYSDDVGTAAACLLSPLFGAITGITLYVDNGM 336
                 55555667778899999998533689999999999999998888888888888888888888887654256789999988888876..57889**************99659************999888887776652234445666538****99************************9999886 PP

>> TIGR02685  pter_reduc_Leis: pteridine reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.1   5.4e-06    0.0025     158     262 ..     221     336 ..     160     340 .. 0.77

  Alignments for each domain:
  == domain 1    score: 14.8 bits;  conditional E-value: 5.4e-06
   TIGR02685 158 lvdamtdqpllgfs.lytmakealeGltrsaalela.slqirvngvapG..lsllpdampeevke.......ey.rrkvplgqreasaeqiadvviflvskkakyitGtiikvdGGl 262
                 l+    ++ ++g+    + ak ale  tr+ a e    ++irvn+++ G   s   +a+++ +k+       +y r   pl + +  ++++  + + l+s+  + itG ++ vd G+
  MMETSP1137-20121227|9344_1 221 LTYIASEKVIPGYGgGMSSAKAALESDTRTLAWEAGrKYGIRVNTISAGplKSRAASAISKGEKKsfievgiDYsRANAPLAK-DLYSDDVGTAAACLLSPLFGAITGITLYVDNGM 336
                 55555556666664235679**************863689******9884346677777776665222222255344567765.5566899999********************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (352 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       111  (0.02706); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         9  (0.00219405); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.38u 0.16s 00:00:00.54 Elapsed: 00:00:00.83
# Mc/sec: 559.76
//
Query:       MMETSP1137-20121227|9345_1  [L=54]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       107  (0.0260848); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.49
# Mc/sec: 145.46
//
Query:       MMETSP1137-20121227|9346_1  [L=73]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (73 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        70  (0.0170648); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.13s 00:00:00.25 Elapsed: 00:00:00.27
# Mc/sec: 356.86
//
Query:       MMETSP1137-20121227|9347_1  [L=223]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (223 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        58  (0.0141394); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.16s 00:00:00.35 Elapsed: 00:00:00.42
# Mc/sec: 700.80
//
Query:       MMETSP1137-20121227|9349_1  [L=840]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (840 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       141  (0.0343735); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.49u 0.14s 00:00:00.63 Elapsed: 00:00:00.84
# Mc/sec: 1319.89
//
Query:       MMETSP1137-20121227|9350_1  [L=300]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (300 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       107  (0.0260848); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.15s 00:00:00.39 Elapsed: 00:00:00.37
# Mc/sec: 1070.18
//
Query:       MMETSP1137-20121227|9351_1  [L=238]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0039   14.2   0.1      0.015   12.2   0.0    1.9  2  TIGR00391 hydA: hydrogenase (NiFe) small subunit (hydA)


Domain annotation for each model (and alignments):
>> TIGR00391  hydA: hydrogenase (NiFe) small subunit (hydA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.0     0.028   1.1e+02       1      31 [.      68      98 ..      68     108 .. 0.86
   2 !   12.2   0.0   3.7e-06     0.015     119     174 ..     108     165 ..     100     175 .. 0.82

  Alignments for each domain:
  == domain 1    score: -0.5 bits;  conditional E-value: 0.028
   TIGR00391  1 neeetlidefkraGisrrdllkyaallatal 31
                ne++++++ ++r+  +r++++k  + + t l
  MMETSP1137-20121227|9351_1 68 NEDKQMKKRMQRRDFQRKEWVKVLSNIETEL 98
                78999*****************999988876 PP

  == domain 2    score: 12.2 bits;  conditional E-value: 3.7e-06
   TIGR00391 119 veGsiPlgeegllcisagepiveklrkaaegaaaiiai.GtcssfG.gvqaarpnPtn 174
                   G  P+g++ ++c++ g+   e  r   +gaa+++ai G+c +    + a + nP +
  MMETSP1137-20121227|9351_1 108 TAGITPKGQDFIWCLVRGDESEESTRADDDGAATVFAIdGACRCCQfPMTAGKLNPKQ 165
                 56889********************************977776543146677788876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (238 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       113  (0.0275475); expected 82.0 (0.02)
Passed bias filter:                      102  (0.0248659); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.22u 0.16s 00:00:00.38 Elapsed: 00:00:00.74
# Mc/sec: 424.51
//
Query:       MMETSP1137-20121227|9352_1  [L=336]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (336 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       172  (0.0419308); expected 82.0 (0.02)
Passed bias filter:                      101  (0.0246221); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.15s 00:00:00.43 Elapsed: 00:00:00.56
# Mc/sec: 791.93
//
Query:       MMETSP1137-20121227|9353_1  [L=264]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (264 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       132  (0.0321794); expected 82.0 (0.02)
Passed bias filter:                      111  (0.02706); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.17s 00:00:00.41 Elapsed: 00:00:00.79
# Mc/sec: 441.08
//
Query:       MMETSP1137-20121227|9354_1  [L=226]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.3e-13   49.0   0.2    1.9e-13   48.5   0.2    1.2  1  TIGR02571 ComEB: ComE operon protein 2
  ------ inclusion threshold ------
      0.033   11.2   0.3      0.056   10.4   0.2    1.3  1  TIGR00326 eubact_ribD: riboflavin biosynthesis protein RibD


Domain annotation for each model (and alignments):
>> TIGR02571  ComEB: ComE operon protein 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.5   0.2   9.1e-17   1.9e-13       6     128 ..      36     160 ..      32     176 .. 0.83

  Alignments for each domain:
  == domain 1    score: 48.5 bits;  conditional E-value: 9.1e-17
   TIGR02571   6 dqyfmaqshllalrstckrlsvgativrdkriiaggy.ngsvagevh...cidegcyvvdghcvrtihaemnallqcakfgvsteeaeiyvthfpclqctksiiqagikkvyyakdykndayalell 128
                 d  f+  + l+a  stck   +g+ i r   +  g    gs+ g  +   c  +  +   g      hae na+  ca  gv+  +   yvt  pc +c k +  +gi+++ y + +  ++ a + l
  MMETSP1137-20121227|9354_1  36 DANFLDLALLIARNSTCKDGHMGCVIARGVEVGEGDEpGGSIDGLSKvvlCTINSSIF--GDYRSDCHAEANAVSLCAANGVAMRGLSCYVTRNPCTSCYKLLAASGIRRIIYPNSHTSEDCAASAL 160
                 67799999***********************999976257999975511154444444..4455689**********************************************99999988877655 PP

>> TIGR00326  eubact_ribD: riboflavin biosynthesis protein RibD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.2   2.7e-05     0.056      42      92 ..      99     146 ..      84     167 .. 0.82

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 2.7e-05
   TIGR00326  42 eaHaEvvAlaqA...gekakgatlyVtLEPCsHqGrTpPCaealieaGikkvvv 92 
                 + HaE +A+      g  ++g   yVt  PC+       C ++l ++Gi+++++
  MMETSP1137-20121227|9354_1  99 DCHAEANAVSLCaanGVAMRGLSCYVTRNPCT------SCYKLLAASGIRRIIY 146
                 67****9986541125567************6......6*************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (226 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        85  (0.0207216); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.22u 0.17s 00:00:00.39 Elapsed: 00:00:00.37
# Mc/sec: 806.20
//
Query:       MMETSP1137-20121227|9356_1  [L=64]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        79  (0.0192589); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.12s 00:00:00.25 Elapsed: 00:00:00.45
# Mc/sec: 187.72
//
Query:       MMETSP1137-20121227|9358_1  [L=225]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (225 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        98  (0.0238908); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.16s 00:00:00.36 Elapsed: 00:00:00.39
# Mc/sec: 761.48
//
Query:       MMETSP1137-20121227|9360_1  [L=379]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.1e-92  308.2   0.0    1.3e-92  308.0   0.0    1.0  1  TIGR01123 ilvE_II: branched-chain amino acid aminotransferase
    5.5e-31  105.7   0.0    6.7e-31  105.4   0.0    1.1  1  TIGR01122 ilvE_I: branched-chain amino acid aminotransferase
    2.3e-07   28.1   0.1    6.9e-07   26.5   0.0    1.7  2  TIGR01121 D_amino_aminoT: D-amino-acid transaminase
    6.7e-07   26.6   0.0      0.013   12.6   0.0    2.1  2  TIGR03461 pabC_Proteo: aminodeoxychorismate lyase


Domain annotation for each model (and alignments):
>> TIGR01123  ilvE_II: branched-chain amino acid aminotransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  308.0   0.0   1.3e-95   1.3e-92       1     309 [.      70     370 ..      70     374 .. 0.98

  Alignments for each domain:
  == domain 1    score: 308.0 bits;  conditional E-value: 1.3e-95
   TIGR01123   1 WdeaelaseaeleldegsavlhYgqevfeGlkayRtadGkillfRpdanakRlrrsaerlllPeleeelflealkqlvkadkdwvpkakseasLYlRPfliatednlGvkaakeylflvlasPvGaYfkgglapvsifveteyvRaapkGtGavkvgGnYaasllaqkkaaeqglddvvyldpvekkkieevGaaniflitkdgelvttplsesiLegvtresllelakdlgleveereiaidelkaaveaGeivfacGtaavitPvgelkiegkevevkseevGevtkklrdeltdiqyGkledkegW 309
                 Wde++l+++ +l+++  s+vlhYgq +feGlka+ + dG++ +f ++ana+R++r a rl++P++++e+f ea+ ++v    d+vp+++ + +LY+RPfl++ + +lG  aa+ey ++ ++sPvG+Y+kg+++ v  +v +ey+Raap+G+G++k +GnYa   l+ ++a+++g+  ++yld+ e+k +ee  ++n+++it dg+l +tp s+siL++ t + +l++a d+g++ve r i+ de+   +e      acGta v+tP+++++  +k ++++     e   kl++++t +q G++edk+g 
  MMETSP1137-20121227|9360_1  70 WDEGTLTPDFTLNIHGLSNVLHYGQGIFEGLKAFHCRDGSVRVFNSSANAARMQRGAARLAMPHVPTEVFNEAIDRVVVDXIDYVPPYGLGGALYIRPFLFGHGCKLGLGAAPEYSLCAITSPVGPYYKGNMEAVDALVVEEYDRAAPRGVGGIKAAGNYAPDTLPSQMAKQRGYPVCLYLDAREQKFVEEFSTSNFIGITADGTL-VTPTSPSILPSCTLQVVLKVAADMGMKVETRPISFDEVATLKEVA----ACGTAVVLTPIESITRSDKVLRFETF---ETIAKLYKAITAMQCGEAEDKYGL 370
                 ***********************************************************************************************************************************************************************************************************766.5689***********************************999988....***********************999...9999*****************985 PP

>> TIGR01122  ilvE_I: branched-chain amino acid aminotransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  105.4   0.0   6.5e-34   6.7e-31       1     261 [.      70     336 ..      70     373 .. 0.82

  Alignments for each domain:
  == domain 1    score: 105.4 bits;  conditional E-value: 6.5e-34
   TIGR01122   1 wldGelvdvedakvhvlthalhYGtgvfeGiRaYetdkgl.aifrlkehveRlydsakilrle...ipyskeelvevtkevlrk...nnlks.aYiRplvyvGaedlglkpkvdlkveviiaawewgaylgeealekGikvkvs.sfrraavnsiptkakaagnYlnsllaksealraGydeailLd..eeGyvaeGsGenif.ivkdgvlltPpvsesiLkgitrdaviklakelgievkeerisreelytaDevfltGtaaevtPirevDg 261
                 w +G l +    ++h l+++lhYG+g+feG++a++  +g+ ++f  +  + R+   a  l ++    ++ +e +  v+++ +      +l    YiRp ++    +lgl + +  + +++ ++ ++g y+  + + + +++ v+  + raa+  +   +kaagnY   +l  + a+++Gy   + Ld  e+ +v e s  n+  i  dg+l+tP    siL + t ++v+k+a+++g++v+ ++is +e+ t  ev   Gta  +tPi+++  
  MMETSP1137-20121227|9360_1  70 WDEGTLTPDFTLNIHGLSNVLHYGQGIFEGLKAFHCRDGSvRVFNSSANAARMQRGAARLAMPhvpTEVFNEAIDRVVVDXIDYvppYGLGGaLYIRPFLFGHGCKLGLGA-AP-EYSLCAITSPVGPYYKGN-M-EAVDALVVeEYDRAAPRGV-GGIKAAGNYAPDTLPSQMAKQRGYPVCLYLDarEQKFVEEFSTSNFIgITADGTLVTPTS-PSILPSCTLQVVLKVAADMGMKVETRPISFDEVATLKEVAACGTAVVLTPIESITR 336
                 55677777777899*********************9997527*************999988862114455677777777766542226898768*******7778999999.44.78999999******9864.5.5677765516888888776.679***************************944578****99998663778*******98.88**************************************************9964 PP

>> TIGR01121  D_amino_aminoT: D-amino-acid transaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0      0.24   2.5e+02      24      58 ..      91     130 ..      87     148 .. 0.71
   2 !   26.5   0.0   6.7e-10   6.9e-07     170     250 ..     254     334 ..     232     357 .. 0.84

  Alignments for each domain:
  == domain 1    score: -1.5 bits;  conditional E-value: 0.24
   TIGR01121  24 qfGdGvyevirvy...nG..klftleehidrlyasaakir 58 
                  +G G++e ++++   +G  ++f  +  ++r+ + aa++ 
  MMETSP1137-20121227|9360_1  91 HYGQGIFEGLKAFhcrDGsvRVFNSSANAARMQRGAARLA 130
                 5899999999988333342246777888888888887654 PP

  == domain 2    score: 26.5 bits;  conditional E-value: 6.7e-10
   TIGR01121 170 rdelvtegsssnvyaik.dgvlythpannlilnGitrkvilklaeenglpvkeealtkeelkeadevfvssttaevtPvvei 250
                  ++ v e s+sn  +i  dg+l t p+   il   t +v+lk+a++ g++v+ ++++ +e+ +  ev    t++ +tP+ +i
  MMETSP1137-20121227|9360_1 254 EQKFVEEFSTSNFIGITaDGTLVT-PTSPSILPSCTLQVVLKVAADMGMKVETRPISFDEVATLKEVAACGTAVVLTPIESI 334
                 34679999****999862666666.89999************************************************9887 PP

>> TIGR03461  pabC_Proteo: aminodeoxychorismate lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.1   0.0   1.8e-05     0.018      16      69 ..      89     147 ..      80     154 .. 0.82
   2 !   12.6   0.0   1.3e-05     0.013     151     247 ..     238     336 ..     218     354 .. 0.80

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 1.8e-05
   TIGR03461  16 alqyGDGlFtTak...vkdgkvellea..HleRLqkaaerLliklvdweeleeelakla 69 
                  l+yG G+F+ +k    +dg+v ++++    +R+q++a+rL+++ v +e  +e + +++
  MMETSP1137-20121227|9360_1  89 VLHYGQGIFEGLKafhCRDGSVRVFNSsaNAARMQRGAARLAMPHVPTEVFNEAIDRVV 147
                 589******9887333689***9997522679**************9999999988776 PP

  == domain 2    score: 12.6 bits;  conditional E-value: 1.3e-05
   TIGR03461 151 elekseadealvldtegk..vvEataaNlf.wvkenkvfTpsLsesGvaGvmrqlvlellkkleveievvkvsleelasadevfitNsllgvvpvkkiee 247
                   +++ +  +l ld +++  v E +++N + ++ +++++Tp+ s s +     q vl++++++++++e+  +s++e+a+  ev  + + + + p+++i++
  MMETSP1137-20121227|9360_1 238 MAKQRGYPVCLYLDAREQkfVEEFSTSNFIgITADGTLVTPT-SPSILPSCTLQVVLKVAADMGMKVETRPISFDEVATLKEVAACGTAVVLTPIESITR 336
                 556666777788887543226678889977356688999997.667788888999*****************************************9984 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (379 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        72  (0.0175524); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.30u 0.18s 00:00:00.48 Elapsed: 00:00:00.50
# Mc/sec: 1000.48
//
Query:       MMETSP1137-20121227|9362_1  [L=190]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.2e-17   61.9   0.0    1.6e-17   61.4   0.0    1.2  1  TIGR02174 CXXU_selWTH: selT/selW/selH selenoprotein domain


Domain annotation for each model (and alignments):
>> TIGR02174  CXXU_selWTH: selT/selW/selH selenoprotein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.4   0.0   3.9e-21   1.6e-17       1      73 [.      42     172 ..      42     173 .. 0.98

  Alignments for each domain:
  == domain 1    score: 61.4 bits;  conditional E-value: 3.9e-21
   TIGR02174   1 veieyCtscgYkrraeelkqaleeefpdleiegenlkpd..........................................................stGaFEitlngklvwsklekggfPeeeelvelik 73 
                 +e++yC + g + ++e++++al+ efp++++ g+  +p+                                                          +tGaFEi+ +g +vwskle+g+fP  +el   i+
  MMETSP1137-20121227|9362_1  42 LEVQYCMAEGTGXAFEDFSRALQREFPQMRFRGSTHHPGdlrvgaaqllqmtffgglavsmvgrsmlpaaaaeflnnnqmltfgllfgcnvlsgkliATGAFEIFYEGTPVWSKLETGRFPALDELTSSIR 172
                 689**************************************************************************************************************************999887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (190 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       112  (0.0273038); expected 82.0 (0.02)
Passed bias filter:                       96  (0.0234032); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.19u 0.11s 00:00:00.30 Elapsed: 00:00:00.60
# Mc/sec: 417.97
//
Query:       MMETSP1137-20121227|9363_1  [L=225]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0021   13.6   9.1     0.0025   13.4   6.3    1.1  1  TIGR02169 SMC_prok_A: chromosome segregation protein SMC
     0.0078   11.8  14.9     0.0081   11.7  10.3    1.1  1  TIGR02168 SMC_prok_B: chromosome segregation protein SMC
  ------ inclusion threshold ------
       0.18    7.8   7.5       0.24    7.4   5.2    1.2  1  TIGR03007 pepcterm_ChnLen: polysaccharide chain length determinant protein, PEP-CTERM locus subfamily
        5.8    3.8  11.8        7.5    3.5   8.2    1.1  1  TIGR01347 sucB: dihydrolipoyllysine-residue succinyltransferase, E2 component of oxoglutarate dehydrogenase (succinyl-transferring) complex


Domain annotation for each model (and alignments):
>> TIGR02169  SMC_prok_A: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   6.3   2.4e-06    0.0025     288     395 ..     108     219 ..      75     225 .] 0.80

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 2.4e-06
   TIGR02169 288 eeqlavkekleelkaeiekleraiaekeeeledaeerlakaeaeidklkeeieelereieeekkerek...lkeelkelkeeleelraeleevdkeaaelreelke.lkekl 395
                 e +++vk+ ++ +++e + + ++ a ++  +e+a++rla+aea  +k +e ++el+ ++++e +  ++   l ++ ++l++e + l ++le+ + e +++ ++ ++ +ke+ 
  MMETSP1137-20121227|9363_1 108 ELMATVKRVVAHVEGEAATAADKGATAAAAAEEAKQRLAQAEAAARKSAEVHAELQSRLQKESQLAAQlppLRAHTEQLQNEAARLARQLEATEGERRAAAAAAASgAKEAA 219
                 568899**************************************************99998766555411178899999999999999999988777666554443144444 PP

>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.7  10.3   7.9e-06    0.0081     319     437 ..      90     211 ..      20     225 .] 0.49

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 7.9e-06
   TIGR02168 319 eeleeqleeleskkeeleeelaeleeeleelkeelesleaeleeaeaeleelesrleeleeelee...lrsevaeleeqlaslnaelerleaeleqleerrerlkqeieelekkleeaeael 437
                 e+  +  +++e +   l e +a+++  ++ ++ e + ++++ ++a+a++ee+++rl+++e+++++   + +e+++  +++++l+a+l  l+a+ eql+++ +rl ++ e+ e +  +a a++
  MMETSP1137-20121227|9363_1  90 EQQAAGSAKAEGRAALLGELMATVKRVVAHVEGEAATAADKGATAAAAAEEAKQRLAQAEAAARKsaeVHAELQSRLQKESQLAAQLPPLRAHTEQLQNEAARLARQLEATEGERRAAAAAA 211
                 22223333333333334444444444444444444444444444444444444444444333332000222333333334444444444444444444444444444444433333222222 PP

>> TIGR03007  pepcterm_ChnLen: polysaccharide chain length determinant protein, PEP-CTERM locus subfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   5.2   0.00024      0.24     282     370 ..     115     196 ..     106     218 .. 0.79

  Alignments for each domain:
  == domain 1    score: 7.4 bits;  conditional E-value: 0.00024
   TIGR03007 282 reiaeLeerkeeelegeksgseeessanpvyqqlqielaeaeaeiaslearvaelearierlesllreipeveaeltqLnrdyevnksn 370
                 r +a+ e        +++++++++++a    ++ ++ la+aea      +  ael++r++++ +l+ ++p   a  +qL++++    ++
  MMETSP1137-20121227|9363_1 115 RVVAHVEG-------EAATAADKGATAAAAAEEAKQRLAQAEAAARKSAEVHAELQSRLQKESQLAAQLPPLRAHTEQLQNEAARLARQ 196
                 33333333.......35566777777777888999*********99999999***************************9997655555 PP

>> TIGR01347  sucB: dihydrolipoyllysine-residue succinyltransferase, E2 component of oxoglutarate dehydrogenase (succinyl-transferring) complex
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   8.2    0.0073       7.5      66     169 ..     112     216 ..      91     225 .] 0.59

  Alignments for each domain:
  == domain 1    score: 3.5 bits;  conditional E-value: 0.0073
   TIGR01347  66 esgevlaeleessaaaeaasekskeekeekaaakaekakeaaekkkalspaarklakeegidleavektkktgrvtkedivkkeekk.asaakeaaakaakaaen 169
                 ++++v+a++e ++a+a+++ ++++++ ee++++ a+++++a+++++  ++ +++l ke++++++  +   +t+++++e +  +++ + ++ +++aaa+aa++ ++
  MMETSP1137-20121227|9363_1 112 TVKRVVAHVEGEAATAADKGATAAAAAEEAKQRLAQAEAAARKSAEVHAELQSRLQKESQLAAQLPPLRAHTEQLQNEAARLARQLEaTEGERRAAAAAAASGAK 216
                 455666666655555555555555555555555555555556666777888889999999999999998999998887665555443233333333333332222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (225 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       409  (0.0997075); expected 82.0 (0.02)
Passed bias filter:                      115  (0.0280351); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.28u 0.19s 00:00:00.47 Elapsed: 00:00:01.03
# Mc/sec: 288.33
//
Query:       MMETSP1137-20121227|9364_1  [L=353]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      4e-21   73.6   0.2    5.4e-21   73.2   0.2    1.2  1  TIGR02349 DnaJ_bact: chaperone protein DnaJ
    5.5e-13   46.0   0.2    8.4e-13   45.4   0.1    1.3  1  TIGR03835 termin_org_DnaJ: terminal organelle assembly protein TopJ


Domain annotation for each model (and alignments):
>> TIGR02349  DnaJ_bact: chaperone protein DnaJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.2   0.2   2.6e-24   5.4e-21       3      75 ..      82     154 ..      80     220 .. 0.81

  Alignments for each domain:
  == domain 1    score: 73.2 bits;  conditional E-value: 2.6e-24
   TIGR02349   3 YeiLgvskdAseeeikkAYrklakkyHPDrnkgekeaeekfkeineAyevLsdeekraqYDqfghagleggag 75 
                 Y +L +++ A+e eik+AY  la+k HPD+++++++a+e+f  i++Ay +Lsd+ekr+ YD  g a+  +  +
  MMETSP1137-20121227|9364_1  82 YATLSLTQAATETEIKRAYLLLARKNHPDKCPDDENAHERFLAISRAYSILSDPEKRKLYDATGLAEDGAPPQ 154
                 999***********************************************************99876655433 PP

>> TIGR03835  termin_org_DnaJ: terminal organelle assembly protein TopJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.4   0.1   4.1e-16   8.4e-13       5      68 ..      82     146 ..      80     190 .. 0.90

  Alignments for each domain:
  == domain 1    score: 45.4 bits;  conditional E-value: 4.1e-16
   TIGR03835   5 yevLgidrDadeqeikkafrkLakkyhPDrnka.adaakifaeineandvLsnPkkraryDkyGh 68 
                 y  L +++ a e eik+a+  La+k hPD+  +  +a + f  i  a+ +Ls+P+kr+ yD  G 
  MMETSP1137-20121227|9364_1  82 YATLSLTQAATETEIKRAYLLLARKNHPDKCPDdENAHERFLAISRAYSILSDPEKRKLYDATGL 146
                 8899**************************98879**************************9884 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (353 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       129  (0.0314481); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.29u 0.09s 00:00:00.38 Elapsed: 00:00:00.61
# Mc/sec: 763.81
//
Query:       MMETSP1137-20121227|9365_1  [L=196]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (196 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        97  (0.023647); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.17s 00:00:00.35 Elapsed: 00:00:00.47
# Mc/sec: 550.42
//
Query:       MMETSP1137-20121227|9367_1  [L=337]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (337 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       134  (0.032667); expected 82.0 (0.02)
Passed bias filter:                      130  (0.0316919); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.18s 00:00:00.48 Elapsed: 00:00:00.42
# Mc/sec: 1059.06
//
Query:       MMETSP1137-20121227|9368_1  [L=726]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (726 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       125  (0.0304729); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.50u 0.16s 00:00:00.66 Elapsed: 00:00:00.61
# Mc/sec: 1570.89
//
Query:       MMETSP1137-20121227|9369_1  [L=402]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (402 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       193  (0.0470502); expected 82.0 (0.02)
Passed bias filter:                      141  (0.0343735); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.17s 00:00:00.50 Elapsed: 00:00:00.53
# Mc/sec: 1001.12
//
Query:       MMETSP1137-20121227|9370_1  [L=294]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (294 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        55  (0.0134081); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.13s 00:00:00.37 Elapsed: 00:00:00.39
# Mc/sec: 994.99
//
Query:       MMETSP1137-20121227|9372_1  [L=214]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (214 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        47  (0.0114578); expected 82.0 (0.02)
Passed bias filter:                       40  (0.00975134); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.10s 00:00:00.29 Elapsed: 00:00:00.56
# Mc/sec: 504.39
//
Query:       MMETSP1137-20121227|9373_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       113  (0.0275475); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.13s 00:00:00.25 Elapsed: 00:00:00.25
# Mc/sec: 274.54
//
Query:       MMETSP1137-20121227|9374_1  [L=438]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (438 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        63  (0.0153584); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.16s 00:00:00.44 Elapsed: 00:00:00.56
# Mc/sec: 1014.23
//
Query:       MMETSP1137-20121227|9375_1  [L=151]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (151 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        60  (0.014627); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.14s 00:00:00.31 Elapsed: 00:00:00.33
# Mc/sec: 603.95
//
Query:       MMETSP1137-20121227|9376_1  [L=235]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (235 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        72  (0.0175524); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.15s 00:00:00.36 Elapsed: 00:00:00.52
# Mc/sec: 596.49
//
Query:       MMETSP1137-20121227|9377_1  [L=749]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0066   14.6   0.1        1.5    7.1   0.0    2.7  2  TIGR01557 myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class


Domain annotation for each model (and alignments):
>> TIGR01557  myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.1   0.0   0.00036       1.5       2      32 ..     168     194 ..     167     211 .. 0.85
   2 !    4.5   0.0    0.0023       9.4       3      34 ..     264     291 ..     262     300 .. 0.89

  Alignments for each domain:
  == domain 1    score: 7.1 bits;  conditional E-value: 0.00036
   TIGR01557   2 krvvWteelhrrFlqAvqklGgedkatPkkI 32 
                 ++v Wt+ ++   l  v++lG  ++  P +I
  MMETSP1137-20121227|9377_1 168 RKVGWTSTEDLAILATVRRLGT-QW--P-RI 194
                 6899******************.99..5.44 PP

  == domain 2    score: 4.5 bits;  conditional E-value: 0.0023
   TIGR01557   3 rvvWteelhrrFlqAvqklGgedkatPkkIle 34 
                 r  Wt e++    ++v+++G  ++   ++I++
  MMETSP1137-20121227|9377_1 264 RAMWTAEEDALIEEGVRRFGC-KW---RQIAS 291
                 779******************.99...89876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (749 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        67  (0.0163335); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.16s 00:00:00.61 Elapsed: 00:00:00.53
# Mc/sec: 1865.28
//
Query:       MMETSP1137-20121227|9378_1  [L=128]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (128 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        54  (0.0131643); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.14s 00:00:00.29 Elapsed: 00:00:00.31
# Mc/sec: 544.99
//
Query:       MMETSP1137-20121227|9379_1  [L=405]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (405 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        99  (0.0241346); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.17s 00:00:00.47 Elapsed: 00:00:00.47
# Mc/sec: 1137.35
//
Query:       MMETSP1137-20121227|9380_1  [L=88]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (88 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        28  (0.00682594); expected 82.0 (0.02)
Passed bias filter:                       27  (0.00658216); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.14s 00:00:00.27 Elapsed: 00:00:00.46
# Mc/sec: 252.50
//
Query:       MMETSP1137-20121227|9383_1  [L=136]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.011   13.6   2.7      0.011   13.6   1.9    1.8  2  TIGR00012 L29: ribosomal protein L29


Domain annotation for each model (and alignments):
>> TIGR00012  L29: ribosomal protein L29
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0      0.42   1.7e+03      34      41 ..      45      52 ..      39      53 .. 0.60
   2 ?   13.6   1.9   2.7e-06     0.011       1      28 [.      87     114 ..      87     131 .. 0.90

  Alignments for each domain:
  == domain 1    score: -3.0 bits;  conditional E-value: 0.42
   TIGR00012 34 ekphrIrq 41
                +k++++++
  MMETSP1137-20121227|9383_1 45 AKTKQFNE 52
                36666665 PP

  == domain 2    score: 13.6 bits;  conditional E-value: 2.7e-06
   TIGR00012   1 elrekskeELakklkelKkeLfeLRfqk 28 
                 e+r+ ++ EL+++++e+K+eL +L +q+
  MMETSP1137-20121227|9383_1  87 EVRKRKQVELQAMINEKKAELERLSAQH 114
                 89*******************9998886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (136 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       215  (0.0524135); expected 82.0 (0.02)
Passed bias filter:                      118  (0.0287665); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.19u 0.16s 00:00:00.35 Elapsed: 00:00:00.28
# Mc/sec: 618.98
//
Query:       MMETSP1137-20121227|9384_1  [L=404]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0031   14.2   0.0     0.0048   13.6   0.0    1.3  1  TIGR02472 sucr_P_syn_N: sucrose-phosphate synthase, putative, glycosyltransferase domain


Domain annotation for each model (and alignments):
>> TIGR02472  sucr_P_syn_N: sucrose-phosphate synthase, putative, glycosyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   0.0   1.2e-06    0.0048      98     161 ..     213     279 ..     159     300 .. 0.86

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 1.2e-06
   TIGR02472  98 deladellkylrkqerlPdli...hahyadaGyvGarlsrllevPlvftGhslGrekrkrllaaglk 161
                 ++   +++ + r+ +r P l+    +   d+ +  ++ +++levP +f  h lG   ++++l+ ++k
  MMETSP1137-20121227|9384_1 213 ETCLANAMMHARQLKRTPLLLdasKTKVVDSFFNAQQGCQVLEVPKMFRDHQLGHRTHAQILKDSRK 279
                 66778899999999999987722256789*****************************999998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (404 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       167  (0.0407118); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.31u 0.15s 00:00:00.46 Elapsed: 00:00:00.60
# Mc/sec: 888.73
//
Query:       MMETSP1137-20121227|9385_1  [L=347]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.2e-90  300.2   0.5      4e-90  299.9   0.4    1.0  1  TIGR02824 quinone_pig3: putative NAD(P)H quinone oxidoreductase, PIG3 family
    1.7e-16   58.4   0.5    7.3e-15   53.0   0.2    2.7  2  TIGR02817 adh_fam_1: zinc-binding alcohol dehydrogenase family protein
    4.3e-10   36.7   1.2    2.1e-07   27.8   0.3    3.2  4  TIGR01751 crot-CoA-red: crotonyl-CoA reductase
    3.2e-08   31.2   0.3    4.6e-08   30.7   0.2    1.1  1  TIGR02825 B4_12hDH: leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase
    1.2e-07   28.7   1.9    9.7e-07   25.7   1.3    2.3  1  TIGR02823 oxido_YhdH: putative quinone oxidoreductase, YhdH/YhfP family
    1.1e-05   22.5   0.3     0.0017   15.3   0.1    2.3  2  TIGR00692 tdh: L-threonine 3-dehydrogenase
    2.1e-05   21.3   4.4      0.018   11.7   1.0    2.1  2  TIGR03451 mycoS_dep_FDH: mycothiol-dependent formaldehyde dehydrogenase
     0.0022   14.9   7.3     0.0092   12.9   0.1    3.5  4  TIGR02822 adh_fam_2: zinc-binding alcohol dehydrogenase family protein
  ------ inclusion threshold ------
      0.027   11.3   1.3      0.075    9.9   0.1    2.0  2  TIGR02818 adh_III_F_hyde: S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase


Domain annotation for each model (and alignments):
>> TIGR02824  quinone_pig3: putative NAD(P)H quinone oxidoreductase, PIG3 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  299.9   0.4   8.8e-93     4e-90       2     324 ..      32     344 ..      30     345 .. 0.96

  Alignments for each domain:
  == domain 1    score: 299.9 bits;  conditional E-value: 8.8e-93
   TIGR02824   2 kaieieeaggpevlelseaplpelkagevlikvaAaGvNrpDvlQraGkYppppgaseilGLEvaGevvavgeevskfkvGdrvcaLvagGgyaeyvvveakqvlpvpeglslveaAalpEtffTvwsnlfelaklkagetvLihggasGiGttaiqlakalgakvlvtagsdekleaaekLGadvainyree.dFvevvkeetegkGvdvilDivggsyleknlkalakdGrlvliallggaka...eldlakllakrltltgstlRarsaeeKaaiaaeleekvwpllaegkvrpvidkvfpledaakAhellessehiGKivLt 324
                 +ai+++e    ++l+l+e+p+p++++g++l++++A+ vNr+D+lQr G+Yppp+ga++ilGLE+aG+v  ++          rv+a+++gGgyae+v+ e++ ++ +p+++++++aAa+pEt +T+++ lf ++k +ag++vLih+gasG+G +a+q+a ++g +v+ t+ s++k++ ++  G   a +yr e  F+  + + t g+GvdvilD+vg+++ e+  k+la+dGr+vl +l+ggak       la+ll+kr++l +stlR+r+++ Ka+++++++++  p++a+g++++v d++fple+a++Ahe +es+ + GK+v++
  MMETSP1137-20121227|9385_1  32 RAITAAE----QKLVLAEHPTPVPGEGQLLVDIHATAVNRADILQRCGHYPPPKGATDILGLEMAGVVHGTD---------RRVMAILSGGGYAEQVALEEELLMDIPSSVTTTQAAAVPETWLTAYQLLFLVGKATAGDSVLIHAGASGVGIAATQIAVRHGLRVFGTC-SENKIKGCRGRGMLDAFDYRAEgGFAPSLLSATGGRGVDVILDCVGAAHAEQSGKVLAQDGRWVLYGLMGGAKLpagSTLLASLLSKRASLLTSTLRSRDVAYKAELTRQFAQNELPHFASGEYKVVTDSTFPLEQAQEAHERVESNLTEGKVVIR 344
                 5555554....89******************************************************98877.........39************************************************************************************997.6899***************97637************************************************9755567899************************************************************************97 PP

>> TIGR02817  adh_fam_1: zinc-binding alcohol dehydrogenase family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.0   0.2   1.6e-17   7.3e-15      14     184 ..      38     191 ..      28     253 .. 0.89
   2 ?    2.0   0.0     0.055        25     314     333 ..     324     343 ..     274     345 .. 0.91

  Alignments for each domain:
  == domain 1    score: 53.0 bits;  conditional E-value: 1.6e-17
   TIGR02817  14 eealvdielakPkpkgrdllvevkavsvnPvdtkvrkkvapea.eelkilGwdaaGvvkavGeevtlfkvGdevfyaGalerpGsnaefhlvderivgkkPkslsfaeaaalPltaitawellfdrlkieedvagekralliiGaaGGvgsiliqlarqlteltviatasra 184
                 e+ lv  e + P+p++  llv+++a +vn  d+  r    p++ + + ilG + aGvv+ + ++v              +   G +ae  +++e +    P s+   +aaa+P t +ta++llf       ++a++ +++li  +a Gvg  ++q+a +  +l+v +t+s  
  MMETSP1137-20121227|9385_1  38 EQKLVLAEHPTPVPGEGQLLVDIHATAVNRADILQRCGHYPPPkGATDILGLEMAGVVHGTDRRVMA------------ILSGGGYAEQVALEEELLMDIPSSVTTTQAAAVPETWLTAYQLLFL-----VGKATAGDSVLIHAGASGVGIAATQIAVRH-GLRVFGTCSEN 191
                 5667778899**************************9877655399*************99888864............566699**************************************94.....356678899*****************9975.79999999865 PP

  == domain 2    score: 2.0 bits;  conditional E-value: 0.055
   TIGR02817 314 nlkrahaliesgkarGkivl 333
                 + ++ah+ +es+ + Gk+v+
  MMETSP1137-20121227|9385_1 324 QAQEAHERVESNLTEGKVVI 343
                 5689**************97 PP

>> TIGR01751  crot-CoA-red: crotonyl-CoA reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.0     0.058        26      21      53 ..      37      69 ..      20      76 .. 0.83
   2 !   27.8   0.3   4.6e-10   2.1e-07     140     234 ..     109     200 ..      96     214 .. 0.85
   3 ?   -2.4   0.0      0.69   3.1e+02     268     308 ..     213     253 ..     196     262 .. 0.77
   4 !    4.2   0.0    0.0068       3.1     356     387 ..     314     345 ..     288     347 .] 0.82

  Alignments for each domain:
  == domain 1    score: 1.2 bits;  conditional E-value: 0.058
   TIGR01751 21 prkalrveqvpvpelgpdevLvavmaagvnynn 53
                 ++ l + + p+p  g+++ Lv + a++vn   
  MMETSP1137-20121227|9385_1 37 AEQKLVLAEHPTPVPGEGQLLVDIHATAVNRAD 69
                567788888999999***************765 PP

  == domain 2    score: 27.8 bits;  conditional E-value: 4.6e-10
   TIGR01751 140 GslaefalvedsqllPkPkhLtWeeaacllLtaatayrqLvgkkpaelkpGdavLiWGaaGGLGsyaiqlaraaGgipvavvssedkaeiarelG 234
                 G++ae    e++ l+  P  +t  +aa++  t  tay+ L+    a    Gd+vLi  +a G+G  a+q+a  +G    +   se+k + +r  G
  MMETSP1137-20121227|9385_1 109 GGYAEQVALEEELLMDIPSSVTTTQAAAVPETWLTAYQLLFLVGKA--TAGDSVLIHAGASGVGIAATQIAVRHGLRVFG-TCSENKIKGCRGRG 200
                 99************************************99977554..58********************9888765555.55677777777655 PP

  == domain 3    score: -2.4 bits;  conditional E-value: 0.69
   TIGR01751 268 fgkairevlGeedvkivlehsGratfpvsvyvvkrgGmvvi 308
                 f  ++ + +G++ v+++l+ +G a    s  v  + G  v+
  MMETSP1137-20121227|9385_1 213 FAPSLLSATGGRGVDVILDCVGAAHAEQSGKVLAQDGRWVL 253
                 55566778889999999999998888888777777776665 PP

  == domain 4    score: 4.2 bits;  conditional E-value: 0.0068
   TIGR01751 356 PtLskvysleeigkaaqkllanelqGkvavLv 387
                  + +++++le+  +a++++++n + Gkv + v
  MMETSP1137-20121227|9385_1 314 VVTDSTFPLEQAQEAHERVESNLTEGKVVIRV 345
                 556789*********************98765 PP

>> TIGR02825  B4_12hDH: leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.7   0.2     1e-10   4.6e-08     104     234 ..     121     250 ..     104     263 .. 0.82

  Alignments for each domain:
  == domain 1    score: 30.7 bits;  conditional E-value: 1e-10
   TIGR02825 104 lltewpdtlplslalgtvgmpgltayfglleicgvkggetvlvnaaagavgsvvgqiaklkgckvvgaagsdekvaylkklgfdvafnyktvksleetlkkas.pdgydcyfdnvggefsntvirqmkkfgr 234
                 ll++ p ++  + a  +v    ltay  l+ +  + +g++vl+ a a  vg    qia  +g +v g++ s++k++  +  g+  af+y++   +  +l  a+   g d+ +d vg   ++   + + + gr
  MMETSP1137-20121227|9385_1 121 LLMDIPSSVTTTQA-AAVPETWLTAYQLLFLVGKATAGDSVLIHAGASGVGIAATQIAVRHGLRVFGTC-SENKIKGCRGRGMLDAFDYRAEGGFAPSLLSATgGRGVDVILDCVGAAHAEQSGKVLAQDGR 250
                 55555555554444.45666789***99999999*********************************85.99*********************9999887776268**********8776665555555555 PP

>> TIGR02823  oxido_YhdH: putative quinone oxidoreductase, YhdH/YhfP family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.7   1.3   2.1e-09   9.7e-07      93     324 .]     107     345 ..      34     345 .. 0.78

  Alignments for each domain:
  == domain 1    score: 25.7 bits;  conditional E-value: 2.1e-09
   TIGR02823  93 haGGyseyarvkadwvvplPeglslkeamilGtAGfTAaLsvealekagltpeegevlVtGAtGgVgslavalLsklGyevvavtgkkeee..eylkelGakevisreeleeekkkplekerwagavDtvGgkvlanvlkqlkyggavaacGlaagaelet..tvl.PfilRgvsllGidsvevplekreavWerlaed....lkleeleelvk.eisleelpevlekllagevkGRvvvkv 324
                   GGy+e++ ++ + ++ +P+ +++ +a+++    +TA   ++ + ka    +  +vl+   + gVg  a+++  + G +v  + + ++ +       l a +  ++  ++ +   +      + ++D+vG+++ ++  k l ++g    +Gl +ga+l++  t+l   + +  sll       +++ ++++ +++a++    +   e++ +++ +  le+++e+ e++ ++ ++G+vv++v
  MMETSP1137-20121227|9385_1 107 SGGGYAEQVALEEELLMDIPSSVTTTQAAAVPETWLTAYQLLFLVGKA---TAGDSVLIHAGASGVGIAATQIAVRHGLRVFGTCSENKIKgcRGRGMLDAFDYRAEGGFAPSLLSATGGRGVDVILDCVGAAHAEQSGKVLAQDGRWVLYGLMGGAKLPAgsTLLaSLLSKRASLLTSTLRSRDVAYKAELTRQFAQNelphFASGEYKVVTDsTFPLEQAQEAHERVESNLTEGKVVIRV 345
                 569**********************************98666555444...45556888777778****************998877766633455678888888888899988889999999************************************86334441455577788877777777777777777777651111233344444444667888888888888888888888875 PP

>> TIGR00692  tdh: L-threonine 3-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.9   0.0    0.0026       1.2       7      76 ..      37     104 ..      32     110 .. 0.75
   2 !   15.3   0.1   3.7e-06    0.0017     111     263 ..     103     257 ..      93     263 .. 0.81

  Alignments for each domain:
  == domain 1    score: 5.9 bits;  conditional E-value: 0.0026
   TIGR00692   7 aeeGavltevpvpelgknevlikvkatsicGtdvhiynwdewaqkrikvpqvlGhevaGevvgiGeeveg 76 
                 ae+  vl+e p p +g++++l+ ++at++  +d+      ++   +  +  +lG e+aG+v g  + v +
  MMETSP1137-20121227|9385_1  37 AEQKLVLAEHPTPVPGEGQLLVDIHATAVNRADIL-QRCGHYPPPK-GATDILGLEMAGVVHGTDRRVMA 104
                 6778899**********************999984.3444444443.34567888888888877777665 PP

  == domain 2    score: 15.3 bits;  conditional E-value: 3.7e-06
   TIGR00692 111 vGvdtaGvfaeyvvvpadnifknpkdidp.elaaiqeplGnavdtv..lesdlaGesvlv.sGaGpiGllavavakaaGasqvivsdkneyrlelakkvGatrvvnvaked.lvkvvaeltsgeGvdvvlelsGapkaleqgldavangGrvallglp 263
                 + +   G +ae v +  + ++ +p++++  + aa+ e    a +    +    aG+svl+ +Ga  +G+ a  +a   G +  +    +e + +  +  G+  + +   e      +   t g Gvdv+l+  Ga +a eq+ +++a+ Gr  l gl 
  MMETSP1137-20121227|9385_1 103 MAILSGGGYAEQVALEEELLMDIPSSVTTtQAAAVPETWLTAYQLLflVGKATAGDSVLIhAGASGVGIAATQIAVRHGLR--VFGTCSENKIKGCRGRGMLDAFDYRAEGgFAPSLLSATGGRGVDVILDCVGAAHA-EQSGKVLAQDGRWVLYGLM 257
                 5566779999999999999999**999761567888998888876521456789999999559999**********99987..5566788888999999999999987775267789999***************999.56668999999*9999986 PP

>> TIGR03451  mycoS_dep_FDH: mycothiol-dependent formaldehyde dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.9   0.1     7e-05     0.032      21      79 ..      48     108 ..      31     115 .. 0.82
   2 !   11.7   1.0   3.9e-05     0.018     171     277 ..     151     256 ..     109     334 .. 0.82

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 7e-05
   TIGR03451  21 vpdpgpgevvvkiqacgvchtdlayreggis..defpfllgheaagvveavgegvtdvepg 79 
                  p pg+g+ +v+i+a++v  +d+  r g          +lg e agvv+    +v ++ +g
  MMETSP1137-20121227|9385_1  48 TPVPGEGQLLVDIHATAVNRADILQRCGHYPppKGATDILGLEMAGVVHGTDRRVMAILSG 108
                 689*************************98622456789**********999999887665 PP

  == domain 2    score: 11.7 bits;  conditional E-value: 3.9e-05
   TIGR03451 171 tgevkrgdsvav.igvggvgeaaiagaalagakkiiavdiddkklerarelgathtvnssee.dvveaireltggfgadvvidavgrpetykqafyardlagtvvlvgv 277
                  g+ + gdsv +  g  gvg aa   a   g + +     +++k++  r  g  ++ + ++e      + + tgg g+dv++d vg  ++ +q+  +  + g+ vl g+
  MMETSP1137-20121227|9385_1 151 VGKATAGDSVLIhAGASGVGIAATQIAVRHGLR-VFG-TCSENKIKGCRGRGMLDAFDYRAEgGFAPSLLSATGGRGVDVILDCVGAAHA-EQSGKVLAQDGRWVLYGL 256
                 577889999977358999999998877777754.444.478999**************99864788899*****************9876.555566666677777765 PP

>> TIGR02822  adh_fam_2: zinc-binding alcohol dehydrogenase family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.9   0.1     2e-05    0.0092      15      68 ..      41      95 ..      32     108 .. 0.77
   2 ?    1.7   0.3      0.05        23     118     193 ..     108     185 ..      98     195 .. 0.78
   3 ?   -0.8   0.0       0.3   1.4e+02     163     203 ..     245     288 ..     242     296 .. 0.68
   4 ?    2.2   0.0     0.037        17     282     327 ..     296     342 ..     269     344 .. 0.69

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 2e-05
   TIGR02822 15 lrlveeevprpgegellvrvracgvcrtdlhvsegdlpvhr.ervipghevvgev 68
                l l e++ p+pgeg+llv ++a  v r+d+    g  p  + +  i g e+ g+v
  MMETSP1137-20121227|9385_1 41 LVLAEHPTPVPGEGQLLVDIHATAVNRADILQRCGHYPPPKgATDILGLEMAGVV 95
                66778999*********************98887777643314445566665555 PP

  == domain 2    score: 1.7 bits;  conditional E-value: 0.05
   TIGR02822 118 dggyaeyttvpaafayrlptgyadeelapllcagiigyrallraelpeggrlgly..gfggsahltaqvalaqgaevh 193
                  ggyae  ++  +  + +p+ ++ ++ a +  + +  y+ l+       g   l   g  g    ++q+a+  g +v 
  MMETSP1137-20121227|9385_1 108 GGGYAEQVALEEELLMDIPSSVTTTQAAAVPETWLTAYQLLFLVGKATAGDSVLIhaGASGVGIAATQIAVRHGLRVF 185
                 69**************************99999999999987665555554433301555666667799998888875 PP

  == domain 3    score: -0.8 bits;  conditional E-value: 0.3
   TIGR02822 163 lpeggrlglygfggsahltaqvalaq...gaevhvltrgaaark 203
                 l + gr  lyg+ g a+l a  +l       +  +lt   ++r 
  MMETSP1137-20121227|9385_1 245 LAQDGRWVLYGLMGGAKLPAGSTLLAsllSKRASLLTSTLRSRD 288
                 67789999*********998766533111345555555555555 PP

  == domain 4    score: 2.2 bits;  conditional E-value: 0.037
   TIGR02822 282 tradarefl.elaaqyrvrvttheypldeadraladlkagrldgaav 327
                 tr  a++ l ++a+     vt  ++pl++a++a + +++   +g  v
  MMETSP1137-20121227|9385_1 296 TRQFAQNELpHFASGEYKVVTDSTFPLEQAQEAHERVESNLTEGKVV 342
                 45444433314555444458889*********998887776666655 PP

>> TIGR02818  adh_III_F_hyde: S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.1   0.00016     0.075       9      79 ..      36     107 ..      29     118 .. 0.84
   2 ?    0.5   0.1      0.12        54     181     268 ..     152     238 ..     108     345 .. 0.66

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 0.00016
   TIGR02818   9 aageplkieevdvelpkkgevlvrivatgvchtdaftlsgadp..egvfpvilghegagiveavgegvtslkv 79 
                 aa++ l + e    +p +g++lv i at v  +d+    g+ p  +g    ilg e ag+v      v+++  
  MMETSP1137-20121227|9385_1  36 AAEQKLVLAEHPTPVPGEGQLLVDIHATAVNRADILQRCGHYPppKG-ATDILGLEMAGVVHGTDRRVMAILS 107
                 688999999999****************************9762145.4579*********988877776655 PP

  == domain 2    score: 0.5 bits;  conditional E-value: 0.12
   TIGR02818 181 akveegatvavf.glggiglsviqgaklakasriiaidineakfelakklgatdlvnpkdydkpiqeviveltdggvdysfecignvnv 268
                  k   g++v +  g  g+g+++ q a   +  r+ +    e+k++ ++  g  d  + +        ++      gvd  ++c+g  + 
  MMETSP1137-20121227|9385_1 152 GKATAGDSVLIHaGASGVGIAATQIAVRHG-LRVFGT-CSENKIKGCRGRGMLDAFDYRAEGGFAPSLLSATGGRGVDVILDCVGAAHA 238
                 566677777765367777777777665543.455543.455566666666666666555554444444444455566666666666554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (347 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       123  (0.0299854); expected 82.0 (0.02)
Passed bias filter:                      107  (0.0260848); expected 82.0 (0.02)
Passed Vit filter:                        18  (0.0043881); expected 4.1 (0.001)
Passed Fwd filter:                         9  (0.00219405); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.46u 0.19s 00:00:00.65 Elapsed: 00:00:00.53
# Mc/sec: 864.16
//
Query:       MMETSP1137-20121227|9386_1  [L=320]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.2e-18   65.1   0.7    3.9e-18   63.5   0.5    1.7  1  TIGR01963 PHB_DH: 3-hydroxybutyrate dehydrogenase
    4.1e-18   63.8   0.0    7.3e-18   63.0   0.0    1.3  1  TIGR01830 3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase
    5.4e-15   52.6   0.1    1.6e-14   51.1   0.1    1.6  1  TIGR02632 RhaD_aldol-ADH: rhamnulose-1-phosphate aldolase/alcohol dehydrogenase
    1.1e-13   49.0   2.4    3.6e-12   44.1   1.6    2.0  1  TIGR01500 sepiapter_red: sepiapterin reductase
    1.9e-13   48.3   0.0    4.8e-09   33.9   0.0    2.1  2  TIGR03971 SDR_subfam_1: oxidoreductase, SDR family
    5.2e-13   46.8   0.4    1.6e-12   45.2   0.3    1.7  1  TIGR02415 23BDH: acetoin reductases
    1.5e-12   45.5   0.0    5.2e-12   43.8   0.0    1.8  1  TIGR01829 AcAcCoA_reduct: acetoacetyl-CoA reductase
    5.1e-12   43.6   0.0    8.1e-12   43.0   0.0    1.2  1  TIGR01832 kduD: 2-deoxy-D-gluconate 3-dehydrogenase
    1.5e-11   42.0   0.0      3e-11   41.0   0.0    1.5  1  TIGR03206 benzo_BadH: 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase
    7.1e-06   23.4   0.0    0.00028   18.1   0.0    2.3  2  TIGR01831 fabG_rel: putative 3-oxoacyl-(acyl-carrier-protein) reductase
    8.1e-05   20.1   0.4    0.00016   19.1   0.1    1.6  2  TIGR01289 LPOR: light-dependent protochlorophyllide reductase
    0.00019   18.6   0.1      0.099    9.7   0.0    2.1  2  TIGR03325 BphB_TodD: cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase
     0.0037   14.2   0.7      0.015   12.2   0.1    2.3  3  TIGR02685 pter_reduc_Leis: pteridine reductase
     0.0054   13.5   0.0     0.0094   12.7   0.0    1.4  1  TIGR03466 HpnA: hopanoid-associated sugar epimerase
  ------ inclusion threshold ------
      0.016   12.1   0.3       0.57    7.0   0.1    2.1  2  TIGR00521 coaBC_dfp: phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase
      0.018   12.4   0.0      0.026   11.9   0.0    1.2  1  TIGR01777 yfcH: TIGR01777 family protein


Domain annotation for each model (and alignments):
>> TIGR01963  PHB_DH: 3-hydroxybutyrate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.5   0.5   1.5e-20   3.9e-18       4     187 ..      46     222 ..      43     231 .. 0.84

  Alignments for each domain:
  == domain 1    score: 63.5 bits;  conditional E-value: 1.5e-20
   TIGR01963   4 alvtGaasGiglaiakelaaaGakvvvndleeeaaeaaakeleea....ggevlalkadvtkeeeiadlieavaaefgsldiLvnnAGiqhvapieefptekfekiiavnltsafhtiraalpimkkqgw.GriiniasvhglvasafKsaYvaaKHglvGltKvlAlEvAetgitanaicPgyvrtpL 187
                 alvtGa+sGig+a+ak+la++G +vv++ l++  + ++a+e++++    +    +++a v+k+++             ++ +L nnAG    +   + ++e + k ++ n  sa++++++ l  m+k+ + G i   +s+ +++ s+f + Y a+K  +  ++ +lA E   +g+ + a+ P+ v+   
  MMETSP1137-20121227|9386_1  46 ALVTGASSGIGKALAKALAEQGLNVVLVALDDMLLMSTAAEMRKSfrtsSSGSSYMPAIVAKTRD------------IHISLLFNNAGYIVTRFYHDSDVEVHLKNMQCNSVSAVRITHHFLNLMYKSSRpGLICFTSSAAAYMPSPFTAFYSATKAFISRFATSLAAEAQPQGVDVIAVHPSPVNSNF 222
                 89****************************97766666555554300003333333333333333............35789********99*********************************9987658999***********************************************9988765 PP

>> TIGR01830  3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.0   0.0   2.9e-20   7.3e-18       1     188 [.      46     225 ..      46     237 .. 0.88

  Alignments for each domain:
  == domain 1    score: 63.0 bits;  conditional E-value: 2.9e-20
   TIGR01830   1 alvtGasrgiGkaiakklakegakvviterskeekaeelaeelkeagvkaaavkldvsdeeevkelveeveeelgeidilvnnAGitrDklllrmkeedwdevikvnLkgvfnvtkavlkkmikk.rsGriinissvvgllGnagqanYaasKaGligltkslakElasrnitvnavaPGfietdmtek 188
                 alvtGas giGka+ak+la++g +vv+    ++  + ++a+e++++      +++  s +  + ++v+++ +   +i++l nnAG    ++      e + + ++ n  ++ ++t++ l+ m k+ r G i   ss ++++ ++  a Y+a+Ka +  ++ sla E   +++ v av P  +++++t++
  MMETSP1137-20121227|9386_1  46 ALVTGASSGIGKALAKALAEQGLNVVLVAL-DDMLLMSTAAEMRKS------FRTSSSGSSYMPAIVAKTRD--IHISLLFNNAGYIVTRFYHDSDVEVHLKNMQCNSVSAVRITHHFLNLMYKSsRPGLICFTSSAAAYMPSPFTAFYSATKAFISRFATSLAAEAQPQGVDVIAVHPSPVNSNFTKN 225
                 79**************************55.667777777777774......55555666666677766555..57999******9999999999999999*********************995389***********************************************************86 PP

>> TIGR02632  RhaD_aldol-ADH: rhamnulose-1-phosphate aldolase/alcohol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.1   0.1   6.1e-17   1.6e-14     416     599 ..      45     218 ..      38     229 .. 0.91

  Alignments for each domain:
  == domain 1    score: 51.1 bits;  conditional E-value: 6.1e-17
   TIGR02632 416 valvtGgasGiGrevarrlvdeGahvvladldaeaaeavaaelvdkfGadkavalkldvtdeeavkaafaevalayGGvdivvnnaGiavskpleeteleeWdlnldilatGyflvareaarllrkqglggnlvfiasknavvakknalaysaakaaeahlvrllaielaelgirvntvaPdav 599
                  alvtG++sGiG+++a+ l+++G  vvl+ ld   + ++aae+ + f +  + +  +      a+ a  +++      + ++ nnaG  v++ +++   e   +n++ +      ++++   l+ k + +g + f++s  a + ++ +  ysa+ka     +  la+e  ++g+ v +v P  v
  MMETSP1137-20121227|9386_1  45 WALVTGASSGIGKALAKALAEQGLNVVLVALDDMLLMSTAAEMRKSFRTSSSGSSYM-----PAIVAKTRDIH-----ISLLFNNAGYIVTRFYHDSDVEVHLKNMQCNSVSAVRITHHFLNLMYKSSRPGLICFTSSAAAYMPSPFTAFYSATKAFISRFATSLAAEAQPQGVDVIAVHPSPV 218
                 589*****************************************9998887776554.....45555556654.....57899***********999999999******************************************************************************877 PP

>> TIGR01500  sepiapter_red: sepiapterin reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.1   1.6   1.4e-14   3.6e-12       3     203 ..      46     225 ..      44     241 .. 0.85

  Alignments for each domain:
  == domain 1    score: 44.1 bits;  conditional E-value: 1.4e-14
   TIGR01500   3 llvtGasrGfGrelaqelakrlkaegsvlvLlaRndeaLkeskaeieaevsalsvdlvsldleaakdvedllkaleesikkeeyerillinnaGtlgdvskrekelsDsknvqkyydsnvtslvvltsellkklkelqglektvvnlssLcaikpfkswalYCaskaaRdmffqvLaleek.edvkvLnYapGvlDtdmqsq 203
                 +lvtGas G+G++la+ la+    +g  +vL+a +d +L ++ ae+       s  + s   + ++       a+   +k ++ +  ll+nnaG +  v++  +  sD++   k+ + n +s+v +t ++l  +    + + ++   ss +a  p +  a+Y a+ka    f   La e + + v v+   p +++ + ++ 
  MMETSP1137-20121227|9386_1  46 ALVTGASSGIGKALAKALAE----QGLNVVLVALDDMLLMSTAAEMRK-----SFRTSSSGSSYMP-------AIV--AKTRDIHISLLFNNAGYI--VTRFYH-DSDVEVHLKNMQCNSVSAVRITHHFLNLMY-KSSRPGLICFTSSAAAYMPSPFTAFYSATKAFISRFATSLAAEAQpQGVDVIAVHPSPVNSNFTKN 225
                 79****************99....9*******************9986.....4555555444444.......443..3556677789******66..666666.59***999******************9887.568999***************************************89999*999999999888765 PP

>> TIGR03971  SDR_subfam_1: oxidoreductase, SDR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.5   0.0   6.1e-05     0.016       6      36 ..      46      76 ..      42      96 .. 0.85
   2 !   33.9   0.0   1.9e-11   4.8e-09      94     215 ..     113     234 ..     100     259 .. 0.92

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 6.1e-05
   TIGR03971  6 alitGaarGqGraeavrlaaeGadiiaidlc 36
                al+tGa+ G G+a a +la++G +++ + l 
  MMETSP1137-20121227|9386_1 46 ALVTGASSGIGKALAKALAEQGLNVVLVALD 76
                9**********************99977654 PP

  == domain 2    score: 33.9 bits;  conditional E-value: 1.9e-11
   TIGR03971  94 ldvvvanaGvlsygrafelseeqWdtvldvnlkGvWktvkavvPalierknGGsiiivssvaglkalpglahyaaakhGlvgltktlanelaeygirvnsihPtsvdtamiepeamrelfak 215
                 + ++ +naG +     ++ + e   + ++ n   + +  +  +  +      G i  +ss+a+    p++a y+a+k  +  ++ +la e+ + g+ v ++hP  v+ + +++ a  +++ +
  MMETSP1137-20121227|9386_1 113 ISLLFNNAGYIVTRFYHDSDVEVHLKNMQCNSVSAVRITHHFLNLMYKSSRPGLICFTSSAAAYMPSPFTAFYSATKAFISRFATSLAAEAQPQGVDVIAVHPSPVNSNFTKNSAKIKVMDD 234
                 77899******999999***********************************************************************************************9998887764 PP

>> TIGR02415  23BDH: acetoin reductases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.2   0.3   6.4e-15   1.6e-12       3     196 ..      46     231 ..      44     264 .. 0.83

  Alignments for each domain:
  == domain 1    score: 45.2 bits;  conditional E-value: 6.4e-15
   TIGR02415   3 alvtGaaqGiGkaiaerLakdGfavavadlneetaketakelkekgtkavavkldvsdkseveeaveqaveklGeldvlvnnaGvalvtpileiteeeleklynvnvkgvlfGiqaaaekfkklkhkGkiinaasiagvegspelsaysstkfavrgltqtaakeLakkgitvnayaPGivktemreeidekla 196
                 alvtGa+ GiGka+a+ La+ G++v+++ l++  ++ ta e++++       ++  s  s + ++v ++++   ++ +l nnaG  ++   ++++ e   k  + n  + +       + + k    G i   +s a+   sp  + ys+tk  +  ++ + a e  ++g+ v a  P  v+ + +++ ++ ++
  MMETSP1137-20121227|9386_1  46 ALVTGASSGIGKALAKALAEQGLNVVLVALDDMLLMSTAAEMRKSF------RTSSSGSSYMPAIVAKTRDI--HISLLFNNAGYIVTRFYHDSDVEVHLKNMQCNSVSAVRITHHFLNLMYKSSRPGLICFTSSAAAYMPSPFTAFYSATKAFISRFATSLAAEAQPQGVDVIAVHPSPVNSNFTKNSAKIKV 231
                 9**************************************9998653......33445556666666665553..6899*****************99988999999888877777777888888889***************************************************9999988776655444 PP

>> TIGR01829  AcAcCoA_reduct: acetoacetyl-CoA reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.8   0.0     2e-14   5.2e-12       3     189 ..      46     224 ..      44     237 .. 0.81

  Alignments for each domain:
  == domain 1    score: 43.8 bits;  conditional E-value: 2e-14
   TIGR01829   3 alvtGglgGiGtaickrlakdGykvvanvapneerakewlqekevegfdvavvkadvssfeeakaavakveaelGpvdvlvnnaGitrdavfkkmtkeqWeevidtnlnsvfnvtrpviegmlergf.GriinissvnGlkGqfGqanysaakaGliGftkalaqegakkgvtvnviaPGyiatemvk 189
                 alvtG++ GiG+a++k+la++G +vv     +    +    + e++ + ++ ++     +    a vak +    ++ +l nnaG     +++  + e   + ++ n  s   +t+  ++ m + +  G i   ss          a ysa+ka +  f+ +la+e+  +gv v ++ P  ++ + +k
  MMETSP1137-20121227|9386_1  46 ALVTGASSGIGKALAKALAEQGLNVVLVALDDMLLMST---AAEMR-KSFRTSSSG---SSYMPAIVAKTR--DIHISLLFNNAGYIVTRFYHDSDVEVHLKNMQCNSVSAVRITHHFLNLMYKSSRpGLICFTSSAAAYMPSPFTAFYSATKAFISRFATSLAAEAQPQGVDVIAVHPSPVNSNFTK 224
                 9************************9887744333222...22222.233444333...333444444433..336999*******************************************987643888899999999999999*********************************999888765 PP

>> TIGR01832  kduD: 2-deoxy-D-gluconate 3-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.0   0.0   3.1e-14   8.1e-12       6     193 ..      44     225 ..      40     237 .. 0.84

  Alignments for each domain:
  == domain 1    score: 43.0 bits;  conditional E-value: 3.1e-14
   TIGR01832   6 kvalvtGantGlGqgiavglaeaGadivgvgiselsetqekvealGrkflslkadladeeaakalvdeaveeagkidilvnnaGiirredavefsekdwddvlnvnlkavfllsqavakkllkqGrkgkiiniasllsfqGGirvpsytasksavaGltkllanewakkginvnaiaPGyletnntea 193
                   alvtGa++G+G+++a +lae G ++v v+  ++     +     +  +s++   + ++ + a+v+++ +   +i  l nnaG i      +   +   + ++ n  +   +++++ + + k+ r g i   +s  ++      + y+a+k  +  ++ +la+e   +g++v a+ P  +++n t++
  MMETSP1137-20121227|9386_1  44 DWALVTGASSGIGKALAKALAEQGLNVVLVALDDMLLMSTA----AEMRKSFRTSSSGSSYMPAIVAKTRDI--HISLLFNNAGYIVTRFYHDSDVEVHLKNMQCNSVSAVRITHHFLNLMYKSSRPGLICFTSSAAAYMPSPFTAFYSATKAFISRFATSLAAEAQPQGVDVIAVHPSPVNSNFTKN 225
                 569***************************99988643332....223344555556677777888887776..599*******8877766666555666789999999999*******************************************************************999888764 PP

>> TIGR03206  benzo_BadH: 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.0   0.0   1.2e-13     3e-11       4     191 ..      44     224 ..      41     254 .. 0.87

  Alignments for each domain:
  == domain 1    score: 41.0 bits;  conditional E-value: 1.2e-13
   TIGR03206   4 kvaivtgggggiggaicrrfaeegakvavldlnaeaaekvaaairekggkaeavavditdrasvdaavaaaeealgpvdvlvnnagwdvlkpflktekaewerliainltgalymhhavlkgmver.kagrivniasdaarvgssgeavyaackgglvafsktlarelarhgitvnvvcpgptdtalle 191
                   a+vtg + gig a+ + +ae+g +v ++ l+       aa++r++       ++  ++ +s   a+ a ++ +  + +l nnag+ v + + +++     + +  n + a+ + h  l+ m +  + g i   +s aa   s   a y+a k  +  f+ +la e   +g+ v  v p p ++ + +
  MMETSP1137-20121227|9386_1  44 DWALVTGASSGIGKALAKALAEQGLNVVLVALDDMLLMSTAAEMRKSF------RTS-SSGSSYMPAIVAKTRDI-HISLLFNNAGYIVTRFYHDSDVEVHLKNMQCNSVSAVRITHHFLNLMYKSsRPGLICFTSSAAAYMPSPFTAFYSATKAFISRFATSLAAEAQPQGVDVIAVHPSPVNSNFTK 224
                 5689****************************9999999999998754......443.34566667776666665.689************************************9999999987626688888889999999***************************************9987654 PP

>> TIGR01831  fabG_rel: putative 3-oxoacyl-(acyl-carrier-protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.0   1.1e-06   0.00028       2      30 ..      47      75 ..      46     111 .. 0.84
   2 ?    3.2   0.0     0.039        10     115     189 ..     151     225 ..     129     261 .. 0.85

  Alignments for each domain:
  == domain 1    score: 18.1 bits;  conditional E-value: 1.1e-06
   TIGR01831  2 lvtgasrgigraialklaadgfeiavhyr 30
                lvtgas gig+a+a  la +g ++ +   
  MMETSP1137-20121227|9386_1 47 LVTGASSGIGKALAKALAEQGLNVVLVAL 75
                9**********************987654 PP

  == domain 2    score: 3.2 bits;  conditional E-value: 0.039
   TIGR01831 115 ihplvmpmirarkggriitlasvsgvmgnrgqvnysaakagligatkalavelakrkitvnciapglidtemvae 189
                  h  +  m +  + g i   +s +  m       ysa+ka +   + +la e   + + v  + p  +++++ ++
  MMETSP1137-20121227|9386_1 151 THHFLNLMYKSSRPGLICFTSSAAAYMPSPFTAFYSATKAFISRFATSLAAEAQPQGVDVIAVHPSPVNSNFTKN 225
                 5666667888888899999999999999999999********999999****99999999999999888877665 PP

>> TIGR01289  LPOR: light-dependent protochlorophyllide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.1   6.3e-07   0.00016       6      46 ..      46      86 ..      41     100 .. 0.85
   2 ?   -2.4   0.0       2.2   5.7e+02      70     102 ..     153     186 ..     117     195 .. 0.63

  Alignments for each domain:
  == domain 1    score: 19.1 bits;  conditional E-value: 6.3e-07
   TIGR01289  6 viitgassglglaaakalvekgkwhvvmacrdlekaekaak 46
                +++tgassg+g a akal+e+g   v++a  d++    aa+
  MMETSP1137-20121227|9386_1 46 ALVTGASSGIGKALAKALAEQGLNVVLVALDDMLLMSTAAE 86
                789*******************8888889889887777765 PP

  == domain 2    score: -2.4 bits;  conditional E-value: 2.2
   TIGR01289  70 kfveqfresgrs.ldalvcnaavylpllkeplfs 102
                 +f++ + +s r+ l ++   aa y+p      +s
  MMETSP1137-20121227|9386_1 153 HFLNLMYKSSRPgLICFTSSAAAYMPSPFTAFYS 186
                 4555444444432556666788888866555555 PP

>> TIGR03325  BphB_TodD: cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.9   0.0    0.0027       0.7       4      34 ..      42      72 ..      39      90 .. 0.83
   2 !    9.7   0.0   0.00039     0.099     122     191 ..     150     222 ..     129     234 .. 0.78

  Alignments for each domain:
  == domain 1    score: 6.9 bits;  conditional E-value: 0.0027
   TIGR03325  4 kdevvlvtggasglgralvdrfvaegarvav 34
                k + +lvtg +sg+g+al +    +g +v +
  MMETSP1137-20121227|9386_1 42 KADWALVTGASSGIGKALAKALAEQGLNVVL 72
                67889*************9999888887754 PP

  == domain 2    score: 9.7 bits;  conditional E-value: 0.00039
   TIGR03325 122 avkaalpalvas.r.gsviftvsnagfypngggalytaakhavvglvkelayelapy.vrvngvapgglstdl 191
                   +  l  +++s r g + ft s a + p+   a+y+a+k  +  +   la e  p+ v v  v p  +++++
  MMETSP1137-20121227|9386_1 150 ITHHFLNLMYKSsRpGLICFTSSAAAYMPSPFTAFYSATKAFISRFATSLAAEAQPQgVDVIAVHPSPVNSNF 222
                 4455566666542447788************************************976889889888877665 PP

>> TIGR02685  pter_reduc_Leis: pteridine reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.2   0.1   5.8e-05     0.015       3      31 ..      45      73 ..      43     139 .. 0.83
   2 ?   -2.2   0.0       1.4   3.7e+02      17      38 ..     113     134 ..     101     149 .. 0.71
   3 ?   -1.2   0.0      0.74   1.9e+02     165     203 ..     177     215 ..     159     226 .. 0.78

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 5.8e-05
   TIGR02685  3 aalvtGaakriGrsiavklhqeGyrvvlh 31
                 alvtGa+  iG+++a++l ++G +vvl 
  MMETSP1137-20121227|9386_1 45 WALVTGASSGIGKALAKALAEQGLNVVLV 73
                59************************985 PP

  == domain 2    score: -2.2 bits;  conditional E-value: 1.4
   TIGR02685  17 iavklhqeGyrvvlhyrrsaea 38 
                 i+  + + Gy v   y+ s+ +
  MMETSP1137-20121227|9386_1 113 ISLLFNNAGYIVTRFYHDSDVE 134
                 4455567788888888888765 PP

  == domain 3    score: -1.2 bits;  conditional E-value: 0.74
   TIGR02685 165 qpllgfslytmakealeGltrsaalelaslqirvngvap 203
                 +p +  ++y+ +k  ++ ++ s a e  ++++ v +v p
  MMETSP1137-20121227|9386_1 177 MPSPFTAFYSATKAFISRFATSLAAEAQPQGVDVIAVHP 215
                 455555678888888888888888899999888888877 PP

>> TIGR03466  HpnA: hopanoid-associated sugar epimerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.7   0.0   3.7e-05    0.0094       3      33 ..      46      76 ..      44      88 .. 0.89

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 3.7e-05
   TIGR03466  3 vlvtGatGFvGsavvrllleeGeevrvlvrk 33
                +lvtGa+  +G+a++++l+e+G +v +++ +
  MMETSP1137-20121227|9386_1 46 ALVTGASSGIGKALAKALAEQGLNVVLVALD 76
                79**********************9877665 PP

>> TIGR00521  coaBC_dfp: phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   0.1    0.0022      0.57     207     235 ..      49      76 ..      46     120 .. 0.73
   2 ?    3.1   0.0     0.034       8.6     214     251 ..     195     233 ..     192     243 .. 0.88

  Alignments for each domain:
  == domain 1    score: 7.0 bits;  conditional E-value: 0.0022
   TIGR00521 207 sNkSsGkmglalAeaavkrGakVtliagp 235
                 +  SsG  g alA+a++++G +V+l+a +
  MMETSP1137-20121227|9386_1  49 TGASSG-IGKALAKALAEQGLNVVLVALD 76 
                 567888.59*****************954 PP

  == domain 2    score: 3.1 bits;  conditional E-value: 0.034
   TIGR00521 214 mglalAeaavkrGakVtlia.gpvsleepkevksikvlt 251
                  +  lA++a  +G +V+ ++ +pv+ +  k+  +ikv++
  MMETSP1137-20121227|9386_1 195 FATSLAAEAQPQGVDVIAVHpSPVNSNFTKNSAKIKVMD 233
                 5789***************86889999999999999986 PP

>> TIGR01777  yfcH: TIGR01777 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0    0.0001     0.026       2     139 ..      47     199 ..      46     209 .. 0.70

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 0.0001
   TIGR01777   2 litGgtGliGralveelekkghevviltrskekekeekkesakevaee..........aeeealegvdavinLaGepiadkrwteerkkeile......SRikttealvelikkakqkpkvlisasavgyYgeseekelteeeeeagddFlakl 139
                 l+tG++  iG+al+++l ++g +vv+++ ++    +++ e  k++ ++           +++   ++  + n aG  ++   + ++   ++ +      S +++t+  ++l+ k++ +p ++  +s+ + Y +s  +++  ++++  + F  +l
  MMETSP1137-20121227|9386_1  47 LVTGASSGIGKALAKALAEQGLNVVLVALDDMLLMSTAAEMRKSFRTSssgssympaiVAKTRDIHISLLFNNAGYIVTRFYHDSDVEVHLKNmqcnsvSAVRITHHFLNLMYKSS-RPGLICFTSSAAAYMPSPFTAFYSATKAFISRFATSL 199
                 89***********************999888766655555555554444556666665555567778899999**99985444444433333222223478999999999999998.7777777777788888877777766655555565555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (320 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       239  (0.0582643); expected 82.0 (0.02)
Passed bias filter:                      207  (0.0504632); expected 82.0 (0.02)
Passed Vit filter:                        42  (0.0102389); expected 4.1 (0.001)
Passed Fwd filter:                        16  (0.00390054); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              16  [number of targets reported over threshold]
# CPU time: 0.44u 0.19s 00:00:00.63 Elapsed: 00:00:00.52
# Mc/sec: 812.24
//
Query:       MMETSP1137-20121227|9387_1  [L=514]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (514 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        81  (0.0197465); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.14s 00:00:00.47 Elapsed: 00:00:00.54
# Mc/sec: 1256.34
//
Query:       MMETSP1137-20121227|9388_1  [L=192]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0087   13.2   0.0      0.012   12.8   0.0    1.2  1  TIGR01983 UbiG: 3-demethylubiquinone-9 3-O-methyltransferase


Domain annotation for each model (and alignments):
>> TIGR01983  UbiG: 3-demethylubiquinone-9 3-O-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.8   0.0   2.8e-06     0.012     111     156 ..      46      89 ..      13      97 .. 0.83

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 2.8e-06
   TIGR01983 111 eeekesfDvvlamEvlEHvadleeilkecaellkpggilflstinr 156
                    +++ D++l++ vlEH++dl ++  ++ +l++ +g++f    n+
  MMETSP1137-20121227|9388_1  46 G--EKKIDLLLSSHVLEHMPDLCSFTSSVFDLMNVNGVVFTEVPNH 89 
                 2..5679********************************9876665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (192 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        92  (0.0224281); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.19u 0.17s 00:00:00.36 Elapsed: 00:00:00.43
# Mc/sec: 589.35
//
Query:       MMETSP1137-20121227|9389_1  [L=344]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (344 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        64  (0.0156021); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.14s 00:00:00.38 Elapsed: 00:00:00.44
# Mc/sec: 1031.91
//
Query:       MMETSP1137-20121227|9391_1  [L=329]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (329 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       105  (0.0255973); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.18s 00:00:00.43 Elapsed: 00:00:00.66
# Mc/sec: 657.95
//
Query:       MMETSP1137-20121227|9392_1  [L=311]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (311 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       123  (0.0299854); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.18s 00:00:00.43 Elapsed: 00:00:00.40
# Mc/sec: 1026.22
//
Query:       MMETSP1137-20121227|9394_1  [L=117]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (117 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       128  (0.0312043); expected 82.0 (0.02)
Passed bias filter:                      109  (0.0265724); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.13s 00:00:00.29 Elapsed: 00:00:00.28
# Mc/sec: 551.53
//
Query:       MMETSP1137-20121227|9395_1  [L=424]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.098    9.2   0.0      0.098    9.2   0.0    1.6  2  TIGR01026 fliI_yscN: ATPase FliI/YscN family
        7.3    3.0  17.6        8.1    2.8  11.8    1.3  1  TIGR01645 half-pint: poly-U binding splicing factor, half-pint family


Domain annotation for each model (and alignments):
>> TIGR01026  fliI_yscN: ATPase FliI/YscN family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -5.5   2.1       1.4   2.8e+03     216     248 ..       6      38 ..       3      41 .. 0.77
   2 ?    9.2   0.0   4.8e-05     0.098     149     178 ..     144     173 ..     132     175 .. 0.91

  Alignments for each domain:
  == domain 1    score: -5.5 bits;  conditional E-value: 1.4
   TIGR01026 216 glkrsvvvvatsDespllrlkgayvataiaeyf 248
                  +++s  v+a +  ++ +   +a+vata a + 
  MMETSP1137-20121227|9395_1   6 HVSQSAAVAAVAAVTAAAIAAAAAVATAAATHK 38 
                 567888888889888888899999999988775 PP

  == domain 2    score: 9.2 bits;  conditional E-value: 4.8e-05
   TIGR01026 149 tGvrsidalltvgkGqrlGifaGsGvGkst 178
                 + v+ +  ll+ gk qr+ i +G+Gv  s+
  MMETSP1137-20121227|9395_1 144 VDVKYVADLLASGKAQRIIIMCGAGVSTSA 173
                 6799**********************9885 PP

>> TIGR01645  half-pint: poly-U binding splicing factor, half-pint family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8  11.8    0.0039       8.1     295     361 ..       9      77 ..       3     134 .. 0.80

  Alignments for each domain:
  == domain 1    score: 2.8 bits;  conditional E-value: 0.0039
   TIGR01645 295 aaaavaa.aaat.akitaaeavagaavlglraqspatassslvtdieakavvssakkeaeevpalpqaa 361
                  +aavaa aa+t a i aa ava+aa+   ++q pa+    l+ + + + + s a ++    ++ + + 
  MMETSP1137-20121227|9395_1   9 QSAAVAAvAAVTaAAIAAAAAVATAAATHKKRQLPAIDQDQLPNEYQHQCICSRASTKILASAPAAISK 77 
                 55666542455525799999*********************************9988765555544444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (424 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       289  (0.0704534); expected 82.0 (0.02)
Passed bias filter:                      175  (0.0426621); expected 82.0 (0.02)
Passed Vit filter:                        21  (0.00511945); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.17s 00:00:00.55 Elapsed: 00:00:00.78
# Mc/sec: 717.48
//
Query:       MMETSP1137-20121227|9396_1  [L=356]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (356 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        68  (0.0165773); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.13s 00:00:00.39 Elapsed: 00:00:00.41
# Mc/sec: 1146.05
//
Query:       MMETSP1137-20121227|9398_1  [L=325]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (325 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       115  (0.0280351); expected 82.0 (0.02)
Passed bias filter:                       97  (0.023647); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.15s 00:00:00.41 Elapsed: 00:00:00.40
# Mc/sec: 1072.41
//
Query:       MMETSP1137-20121227|9399_1  [L=384]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (384 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       110  (0.0268162); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.14s 00:00:00.43 Elapsed: 00:00:00.46
# Mc/sec: 1101.82
//
Query:       MMETSP1137-20121227|9400_1  [L=171]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (171 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        66  (0.0160897); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.16s 00:00:00.33 Elapsed: 00:00:01.09
# Mc/sec: 207.07
//
Query:       MMETSP1137-20121227|9401_1  [L=175]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (175 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        56  (0.0136519); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.12s 00:00:00.30 Elapsed: 00:00:00.31
# Mc/sec: 745.10
//
Query:       MMETSP1137-20121227|9402_1  [L=110]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (110 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        66  (0.0160897); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.14s 00:00:00.30 Elapsed: 00:00:00.28
# Mc/sec: 500.65
//
Query:       MMETSP1137-20121227|9403_1  [L=305]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (305 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        95  (0.0231594); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.16s 00:00:00.40 Elapsed: 00:00:00.43
# Mc/sec: 936.20
//
Query:       MMETSP1137-20121227|9404_1  [L=328]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (328 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       101  (0.0246221); expected 82.0 (0.02)
Passed bias filter:                       99  (0.0241346); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.13s 00:00:00.39 Elapsed: 00:00:00.51
# Mc/sec: 848.87
//
Query:       MMETSP1137-20121227|9405_1  [L=513]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.1e-06   24.9   2.3     0.0011   15.8   0.0    2.6  2  TIGR01622 SF-CC1: splicing factor, CC1-like family
    4.7e-06   23.8   0.0    6.5e-06   23.4   0.0    1.3  1  TIGR01628 PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family
     0.0015   14.9   0.7      0.002   14.5   0.0    1.5  2  TIGR01642 U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor
     0.0039   14.6   0.0      0.012   13.1   0.0    1.7  2  TIGR01661 ELAV_HUD_SF: ELAV/HuD family splicing factor


Domain annotation for each model (and alignments):
>> TIGR01622  SF-CC1: splicing factor, CC1-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0   1.1e-06    0.0011     220     297 ..     108     185 ..      88     222 .. 0.62
   2 !    7.6   0.6   0.00034      0.34      81     178 ..     237     339 ..     227     351 .. 0.62

  Alignments for each domain:
  == domain 1    score: 15.8 bits;  conditional E-value: 1.1e-06
   TIGR01622 220 lkLYvGnlhfnitEqeLrqiFepFGeielvqlqkDpetGrskGyGFiqFsdaeeakeAleklNGlel..AGReikvglas 297
                 + +Yv  +  + + ++Lr +F p G++  v l++       kGy F++F+  +   +A+ ++ G  l   G  +k g ++
  MMETSP1137-20121227|9405_1 108 RTIYVEPVPRDASIDSLRTLFAPCGDVAGVFLPRLRSR-DVKGYAFLEFTTESAVTKAIARFHGAGLgtTG-AVKEGTVK 185
                 34566666666666777777777777777777776666.67777777777777777777777774441033.45555544 PP

  == domain 2    score: 7.6 bits;  conditional E-value: 0.00034
   TIGR01622  81 errredevrrkrkeredrrerrek....eerlkeelteeeRDartvfvl.ql....alklreRdlkEFFskvgkvrdvrlikDrnSrr.SkGvaYvEFydvesvqlAl 178
                 +r++ ++ rr  +++e+    r+      er  +  + +     tv+ + ++     +k   R+++E F+++++v  v      +S+     vaYv F+ +    +A+
  MMETSP1137-20121227|9405_1 237 QRDEYKRLRRAGQTDEEA--SRNSakagAERWAQRAAADAATPHTVMLIsKIgrssSIKKIRREMNEMFEEIAPVEYVDY---GVSNSgDPTVAYVRFKSEVGADTAV 339
                 233333333333333333..333223567787888887778888887651333322677889************987765...3444313579999999988777776 PP

>> TIGR01628  PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.4   0.0   6.3e-09   6.5e-06     180     246 ..     109     247 ..      70     398 .. 0.77

  Alignments for each domain:
  == domain 1    score: 23.4 bits;  conditional E-value: 6.3e-09
   TIGR01628 180 NlYvKnlddsvtedklrelFakfGeitSaivkkdeknrkrgfafvnyekaedAkkAveelngkkit........................................................................l 246
                  +Yv  ++ + + d+lr lFa+ G++  +   + +++  +g+af+++ ++ + +kA+ +++g  ++                                                                         
  MMETSP1137-20121227|9405_1 109 TIYVEPVPRDASIDSLRTLFAPCGDVAGVFLPRLRSRDVKGYAFLEFTTESAVTKAIARFHGAGLGttgavkegtvkedavkeagvkedsvkedaekeggvkenavkeggvngagvplrvipkeqwaeqrdeykrlrrA 247
                 58************************************************************99997777777777777777777777777777777777777777766644444444444444444444444444440 PP

>> TIGR01642  U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.0     2e-06     0.002     290     365 ..     102     175 ..      77     220 .. 0.83
   2 ?   -5.1   0.9       1.7   1.8e+03      36      86 ..     239     259 ..     231     276 .. 0.39

  Alignments for each domain:
  == domain 1    score: 14.5 bits;  conditional E-value: 2e-06
   TIGR01642 290 ktvldsedklyignLPldlkddqvkeLLesFGdLkaFnliKdlatGlsKGyaFceykdssvtdlAiaaLnGiklgd 365
                 k+v+ds+  +y++ +P d   d ++ L  + Gd+ +  l + l     KGyaF e+   s    Aia   G  lg 
  MMETSP1137-20121227|9405_1 102 KAVSDSR-TIYVEPVPRDASIDSLRTLFAPCGDVAGVFLPR-LRSRDVKGYAFLEFTTESAVTKAIARFHGAGLGT 175
                 5667765.6*************************9987765.667789*********************9998875 PP

  == domain 2    score: -5.1 bits;  conditional E-value: 1.7
   TIGR01642  36 dRdrrdrrrsrrkdsRdRdrrrydsrsissleedsrrrSRdrirrrsrsss 86 
                 d  +r                               rr+ + +++ sr+s 
  MMETSP1137-20121227|9405_1 239 DEYKR------------------------------LRRAGQTDEEASRNSA 259
                 22222..............................2222222222222222 PP

>> TIGR01661  ELAV_HUD_SF: ELAV/HuD family splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.1   0.0   1.1e-05     0.012     251     336 ..      91     174 ..       9     187 .. 0.54
   2 ?   -2.4   0.0      0.57   5.8e+02     132     152 ..     323     343 ..     310     348 .. 0.84

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 1.1e-05
   TIGR01661 251 gavaglaagaqiaasdgagycifvynlspdtd.eavlqlfgpfGavqsvkiirdlttnkckGygfvsmtnydeaalailslnGytlg 336
                 + va l + +  a sd     i+v  +  d+  +++  lf+p G v  v + r l+++  kGy+f+  t     ++ai+ + G  lg
  MMETSP1137-20121227|9405_1  91 ARVARLDKLPPKAVSD--SRTIYVEPVPRDASiDSLRTLFAPCGDVAGVFLPR-LRSRDVKGYAFLEFTTESAVTKAIARFHGAGLG 174
                 3344454444444433..46688888887766255558899999988886655.668888999998888888888888888888776 PP

  == domain 2    score: -2.4 bits;  conditional E-value: 0.57
   TIGR01661 132 GvGfirfdkreeadraikaln 152
                  v ++rf     ad+a++ l 
  MMETSP1137-20121227|9405_1 323 TVAYVRFKSEVGADTAVRVLT 343
                 589999999999999999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (513 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       133  (0.0324232); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.45u 0.19s 00:00:00.64 Elapsed: 00:00:00.44
# Mc/sec: 1538.87
//
Query:       MMETSP1137-20121227|9406_1  [L=695]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (695 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       332  (0.0809361); expected 82.0 (0.02)
Passed bias filter:                      106  (0.0258411); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.53u 0.17s 00:00:00.70 Elapsed: 00:00:00.49
# Mc/sec: 1872.09
//
Query:       MMETSP1137-20121227|9407_1  [L=600]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.7e-63  212.7   0.0    2.9e-63  212.0   0.0    1.2  1  TIGR02435 CobG: precorrin-3B synthase
    1.5e-37  126.8   0.0    2.3e-28   96.5   0.0    2.1  2  TIGR02042 sir: sulfite reductase, ferredoxin dependent
    7.8e-34  114.8   0.0    1.6e-33  113.8   0.0    1.4  1  TIGR02041 CysI: sulfite reductase (NADPH) hemoprotein, beta-component
    1.4e-25   87.8   0.0    7.5e-15   52.5   0.0    2.6  2  TIGR02912 sulfite_red_C: sulfite reductase, subunit C
    3.4e-17   60.3   0.0    9.6e-13   45.7   0.0    3.1  3  TIGR02066 dsrB: sulfite reductase, dissimilatory-type beta subunit
    1.4e-14   51.3   0.0    2.9e-07   27.1   0.0    2.2  2  TIGR02374 nitri_red_nirB: nitrite reductase [NAD(P)H], large subunit
    2.1e-09   34.6   0.0      2e-07   28.0   0.0    2.6  3  TIGR02064 dsrA: sulfite reductase, dissimilatory-type alpha subunit


Domain annotation for each model (and alignments):
>> TIGR02435  CobG: precorrin-3B synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  212.0   0.0   4.9e-66   2.9e-63      16     385 ..     124     533 ..     112     535 .. 0.89

  Alignments for each domain:
  == domain 1    score: 212.0 bits;  conditional E-value: 4.9e-66
   TIGR02435  16 dgllvRvrlvggiLtsaqvigLAelAerlg..ngiievtaRanlQlRgla.adadalseallaagllaagaaadevrnvevsplaGidpgeiadtralaeelraalenek........alleLgpkfsvalDgGgrltllevtaDvrlk..alkegdgvalalslaGastsarll........vavapdaavevlvavlrvfvekgr.....aarlrdlldeelvdealeeve.......lkllpeaaegeakreavaaaaplGlhpqadag.vtlGvglalGrltaaqlaelaelaqalGdgelrLtpwralLvlgvpeeraaaaqa...alaalGlvisasdprariaACtGapgCasaladtkadAealaaeleetvd....ltvHlsGCaksCAapgpaaltLvaae 385
                  + ++R+r ++gi++s+ +   A+l e +g  +g++++t+R n+QlRg+  +dad++++al a +    ++a d+vrn+++splaGidp+e++dtr + ++l+  +   +        +  +L++kf++a+ g  +     + +D+ l+  a  e +++ + + ++G    +r++          +  ++a ++  a+lr+f ++g      +arl  l +e +vd ++ +v+       + +++++a+   ++e+ ++++ lG+h+q+++g   +G+ +++Grlt+   ++la la a+ +ge+rLt+ +++++++v +++ +a+ a   ++ +  l + +s+ + + + CtGa+ C  a+++tka A+++a+ l+e+v+    l vH +GC +sC++ ++a+++L++a 
  MMETSP1137-20121227|9407_1 124 GSFMMRLRTPNGIVNSKLMRLYADLVEPYGpeQGVVDITTRQNIQLRGIRlEDADKVIDALHANNQTSFQSALDNVRNLVGSPLAGIDPHEMVDTRDICNHLNDLISLDRetglrgnpVWGNLPRKFNIAVSGSRDDFAHTNINDIGLEpcAHAETNEMGFNVVIGGYMSIKRVAasvpinlwIPADVNHAYTLSEAILRIFRDEGSrgdrqKARLMWLVEEMGVDTFRSKVVeemdsyaRDVRTDVAQP-HPTEPFERRELLGVHAQKQEGlSRVGIHVPTGRLTPLLCRQLADLADAYSAGEIRLTVEQNVMLPNVDNDKLEALLAepaLAPSSPLQVFPSNIAGNTVSCTGAQFCGLAMIETKANADRIARMLDERVEvpkkLRVHWTGCPNSCGQVQAADIGLMGAP 533
                 688**************************9888********************************************************************998875443111111116679*********999888889999*****9334455569***********999999665665444445678899999*********999999999*****************9999999988888888776.9********************99********************************************9999888764222666789*******************************************9999999*********************986 PP

>> TIGR02042  sir: sulfite reductase, ferredoxin dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.2   0.0   1.8e-10     1e-07      69     172 ..     125     230 ..     117     243 .. 0.83
   2 !   96.5   0.0   3.9e-31   2.3e-28     219     511 ..     244     533 ..     234     542 .. 0.81

  Alignments for each domain:
  == domain 1    score: 28.2 bits;  conditional E-value: 1.8e-10
   TIGR02042  69 sfmlrtknpggkvpnqlyltlddladeyg..igtlrlttrqafqlhgvlkknlktvistivknlgstlgacgdlnrnvlapaapfkkkaeyefaketadniadlls 172
                 sfm+r+++p+g v ++l     dl + yg  +g + +ttrq +ql g+  ++   vi ++  n  +++ +  d  rn++  +    +  e   +++  + + dl+s
  MMETSP1137-20121227|9407_1 125 SFMMRLRTPNGIVNSKLMRLYADLVEPYGpeQGVVDITTRQNIQLRGIRLEDADKVIDALHANNQTSFQSALDNVRNLVGSPLAGIDPHEMVDTRDICNHLNDLIS 230
                 8***************************9556899***********************999888777777777778877655544555588888888888888876 PP

  == domain 2    score: 96.5 bits;  conditional E-value: 3.9e-31
   TIGR02042 219 gtqylprkfkvavtvptdnsvdlftqdiglvvvsdekgelegfniyvggglgrthrkeetfarladplgyvpkedilaavkaivvtqrdygdrddrryarlkylisdwgiekfrevv.eey..fgkkiapvrelp....efkykdylgwheqg.dgklflglsvdsgrvkdegafqlkkalrevvekykl.dvrltpnqniilydikpedkraittvlaqagll..qpeavdp..lnrtamacpalplcglaiteaeraipgilkrvrallekvglkdesvvvrltgcpngcarpymaelglvgda 511
                 g   lprkf +av+   d+      +digl   ++ + +  gfn+ +gg +       +    l  p      +  ++  +ai+   rd+g r dr+ arl +l+++ g++ fr++v ee+  + ++++     p    +f+ ++ lg h q  +g   +g++v +gr+       l + l ++ + y   ++rlt +qn++l ++ +++   ++++la+ +l   +p +v p  +   +++c     cgla+ e++       +r+ ++l++     +++ v  tgcpn c +   a++gl+g  
  MMETSP1137-20121227|9407_1 244 G--NLPRKFNIAVSGSRDDFAHTNINDIGLEPCAHAETNEMGFNVVIGGYMSIKRVAASVPINLWIPAD---VNHAYTLSEAILRIFRDEGSRGDRQKARLMWLVEEMGVDTFRSKVvEEMdsYARDVRTDVAQPhptePFERRELLGVHAQKqEGLSRVGIHVPTGRLTP----LLCRQLADLADAYSAgEIRLTVEQNVMLPNVDNDK---LEALLAEPALApsSPLQVFPsnIAGNTVSCTGAQFCGLAMIETKAN----ADRIARMLDERVEVPKKLRVHWTGCPNSCGQVQAADIGLMGAP 533
                 4..39*********************************************9876655555444544432...234567789*********************************876254333777665433333223379*********886268889***********9....89999********8758**************8876...5667777666411444444411566789**************9865....478999998887778999**********************964 PP

>> TIGR02041  CysI: sulfite reductase (NADPH) hemoprotein, beta-component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  113.8   0.0   2.7e-36   1.6e-33      61     480 ..     125     533 ..     103     543 .. 0.79

  Alignments for each domain:
  == domain 1    score: 113.8 bits;  conditional E-value: 2.7e-36
   TIGR02041  61 alllrvrlpGGvitpkqwlkldklarkyan..gslrlttrqtfqfhGilkkelkkvikalhsvlldslaaagdvnrnvlctsnpleselhrevyewakkisehllprtrayaeiwldekkvagaeeeepilGktylprkfkiavavpplndvdvyandlgfvaiae.deklvGfnvliGGglslehGdkktyprlakvlGfveleellavaeavvttqrdfGnrtdrknarlkytierlGldalkaeverragiklepvr.....py..k.fterGdrig.wvkgidgrwhltlfiesGrivdeedkklltGlreiak.ihkGdfritanqnliiaevsekekaki...eklakkyGlidgkvtalrknslacvalptcplamaeaerylpdfiakldkilekyGladeeivlrvtGcpnGcarallaeiglvGka 480
                 ++++r r+p G++++k      +l + y+   g + +ttrq  q+ Gi  ++  kvi alh+    s+ +a d  rn++    pl     +e   +++ i +hl         i ld +    ++   p++G+  lprkf iav+    +      nd+g+   a+ + + +Gfnv+iGG +s+++   +    +   +   +++++++++ea++ + rd G r dr++arl + +e++G+d+++++v + ++   ++vr     p+  + f+ r + +g   + ++g  ++ +++++Gr++    ++    l ++a     G++r+t +qn+++ +v +++ + +    +la ++ l+    ++++ n+++c     c+lam e++       +++ ++l +     +++ +  tGcpn c++   a+igl+G  
  MMETSP1137-20121227|9407_1 125 SFMMRLRTPNGIVNSKLMRLYADLVEPYGPeqGVVDITTRQNIQLRGIRLEDADKVIDALHANNQTSFQSALDNVRNLVG--SPLAGIDPHE-MVDTRDICNHLND------LISLDRETGLRGN---PVWGN--LPRKFNIAVSGSRDDFAHTNINDIGLEPCAHaETNEMGFNVVIGGYMSIKRVAASVP--INLWI-PADVNHAYTLSEAILRIFRDEGSRGDRQKARLMWLVEEMGVDTFRSKVVEEMDSYARDVRtdvaqPHptEpFE-RRELLGvHAQKQEGLSRVGIHVPTGRLTPLLCRQ----LADLADaYSAGEIRLTVEQNVMLPNVDNDKLEALlaePALAPSSPLQV-FPSNIAGNTVSCTGAQFCGLAMIETKANA----DRIARMLDERVEVPKKLRVHWTGCPNSCGQVQAADIGLMGAP 533
                 6999**********999988889999998656899******************************************864..4666544444.456899****954......5889998766666...****7..9*******99888877888999*99988777456679**********9987655443..33333.367899***************************************9987777654444441111143113233.334444156677788899*********9765555....5566651578*************9998876554422224666666665.7899********************98654....5666666677677899999********************965 PP

>> TIGR02912  sulfite_red_C: sulfite reductase, subunit C
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.5   0.0   1.6e-11   9.4e-09      13      79 ..     118     186 ..     105     281 .. 0.77
   2 !   52.5   0.0   1.3e-17   7.5e-15      15     168 ..     390     539 ..     385     556 .. 0.87

  Alignments for each domain:
  == domain 1    score: 32.5 bits;  conditional E-value: 1.6e-11
   TIGR02912  13 rvtkergktairvrvpggileakylsllrdiaetyg..ngkvhittrqgleipgikfedidevnkllqp 79 
                 r  ++ g  ++r+r p gi+++k++ l +d+ e yg  +g v ittrq++++ gi++ed d+v ++l+ 
  MMETSP1137-20121227|9407_1 118 RRKRSPGSFMMRLRTPNGIVNSKLMRLYADLVEPYGpeQGVVDITTRQNIQLRGIRLEDADKVIDALHA 186
                 556677999**************************966699**********************999875 PP

  == domain 2    score: 52.5 bits;  conditional E-value: 1.3e-17
   TIGR02912  15 tkergktairvrvpggileakylsllrdiaetygngkvhittrqgleipgikfedidevnkllqpiiegleieqeevqkgysasgtrnvtacignrvcpfanydttklakriekav...fpsdyhlkialtgcpndcikarmadlgilgvtepryda 168
                  k+ g + + + vp g l   +   l+d+a+ y  g++ +t+ q++ +p+++ ++       l+ ++ +  +  +++ + + +  + n ++c g + c  a  +t   a ri +++      + +l++  tgcpn c +++ ad+g++g    + d 
  MMETSP1137-20121227|9407_1 390 QKQEGLSRVGIHVPTGRLTPLLCRQLADLADAYSAGEIRLTVEQNVMLPNVDNDK-------LEALLAEPALAPSSPLQVFPSNIAGNTVSCTGAQFCGLAMIETKANADRIARMLderVEVPKKLRVHWTGCPNSCGQVQAADIGLMGAPAKKMDP 539
                 6889999999****************************************98555.......5666777777889999999999999*******************99999988873323457889999********************98777664 PP

>> TIGR02066  dsrB: sulfite reductase, dissimilatory-type beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.6   0.0    0.0025       1.4      31      89 ..     126     187 ..     114     228 .. 0.87
   2 !    5.3   0.0    0.0032       1.9     232     315 ..     277     359 ..     245     372 .. 0.82
   3 !   45.7   0.0   1.6e-15   9.6e-13      45     170 ..     411     534 ..     390     557 .. 0.85

  Alignments for each domain:
  == domain 1    score: 5.6 bits;  conditional E-value: 0.0025
   TIGR02066  31 ytvkagtpr.lvsvdtlrklcdiadkya..dGylritirnnveflvsdeskvqklidelekl 89 
                 + +++ tp+ +v+ + +r  +d+ + y+  +G + it+r+n++      + ++k+id+l+ +
  MMETSP1137-20121227|9407_1 126 FMMRLRTPNgIVNSKLMRLYADLVEPYGpeQGVVDITTRQNIQLRGIRLEDADKVIDALHAN 187
                 67788888889999999**********8668************9999999999999999763 PP

  == domain 2    score: 5.3 bits;  conditional E-value: 0.0032
   TIGR02066 232 adaeddglailvGGklsnarvkPelskvvvpyiPnePPrypevvavvkkileayke.dakkyerlaewveriGWekffelvglef 315
                 a++++ g  +++GG +s  rv  ++   +  +iP++     ++ +++ +i+    + + ++  rl+  ve +G + f  +v  e+
  MMETSP1137-20121227|9407_1 277 AETNEMGFNVVIGGYMSIKRVAASVP--INLWIPADVNHAYTLSEAILRIFRDEGSrGDRQKARLMWLVEEMGVDTFRSKVVEEM 359
                 56788999************987664..667******9999999999999866554155778899999******99988876554 PP

  == domain 3    score: 45.7 bits;  conditional E-value: 1.6e-15
   TIGR02066  45 tlrklcdiadkyadGylritirnnveflvsdeskvqklidelek.lgfpvGGtgdavagnivhtqgwlhcdipaidasgivkalmdelieyft.eeklPakvrislsccasmcgavtasdiaivgvhr 170
                   r+l+d+ad y+ G +r+t+ +nv     d++k++ l  e       p+    + +agn v ++g   c ++ i++    ka  d +   +    ++P k+r+  ++c+++cg v+a+di ++g   
  MMETSP1137-20121227|9407_1 411 LCRQLADLADAYSAGEIRLTVEQNVMLPNVDNDKLEALLAEPALaPSSPLQVFPSNIAGNTVSCTGAQFCGLAMIET----KANADRIARMLDeRVEVPKKLRVHWTGCPNSCGQVQAADIGLMGAPA 534
                 579**********************************9988766478899999**********************96....7777888777773568************************9887543 PP

>> TIGR02374  nitri_red_nirB: nitrite reductase [NAD(P)H], large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.3   0.0     7e-09   4.1e-06     554     769 ..     120     363 ..      95     374 .. 0.72
   2 !   27.1   0.0     5e-10   2.9e-07     523     692 ..     359     531 ..     342     564 .. 0.84

  Alignments for each domain:
  == domain 1    score: 23.3 bits;  conditional E-value: 7e-09
   TIGR02374 554 iqkdgtysvvPrvyGGeinaedLrkiadiveeyel...yvkitggqrldlfGvkkddLPkiwkdLkeaglesghaygkalrtvktCvgsqfcry......Gqqdsvq.....Laielekryegl....rtPhkiklgvsgCereCaeaalkDvGv......iatekGWnlyvgGngGtkaraadL...laadkdketlikyidrflqyyietadkLertaa...W.lerlgldhvrevliedelglr 769
                  +  g++++  r++ G +n++ +r+ ad+ve y+     v it  q ++l G++ +d  k+   L+    +    ++ al  v+  vgs            ++d+ +     ++++ e  ++g     ++P k +++vsg   + a ++++D+G+       + e G+n+ +gG   +k  aa +   l    d ++   + ++ l  +++   + +r +a   W +e++g+d  r+ ++e+    +
  MMETSP1137-20121227|9407_1 120 KRSPGSFMMRLRTPNGIVNSKLMRLYADLVEPYGPeqgVVDITTRQNIQLRGIRLEDADKVIDALHANNQT---SFQSALDNVRNLVGSPLAGIdphemvDTRDICNhlndlISLDRETGLRGNpvwgNLPRKFNIAVSGSRDDFAHTNINDIGLepcahaETNEMGFNVVIGGYMSIKRVAASVpinLWIPADVNHAYTLSEAILRIFRDEGSRGDRQKArlmWlVEEMGVDTFRSKVVEEMDSYA 363
                 5556788888899********************7654689*************************999885...899***********988754111111455554322221234445566664334468************************733322124578*********999988887633345556777777777888888886655554443222253689999999988888766555 PP

  == domain 2    score: 27.1 bits;  conditional E-value: 5e-10
   TIGR02374 523 vaslLaslysekildeeatslqdsndrllaniqkdgtysvvP.rvyGGeinaedLrkiadiveeyel.yvkitggqrldlfGvkkddLPkiwkdLkeaglesghaygkalr.tvktCvgsqfcryGqqdsvqLaielekry.eglrtPhkiklgvsgCereCaeaalkDvGvia 692
                 ++s+   + ++  +++++ ++ +  + l    qk++  s v  +v+ G++++   r++ad++++y+   +++t  q + l  v +d+L  +  +   a     + +   +     +C+g qfc     ++ + a  + + + e +++P+k+++  +gC+  C + +  D+G+++
  MMETSP1137-20121227|9407_1 359 MDSYARDVRTDVAQPHPTEPF-ERRELLGVHAQKQEGLSRVGiHVPTGRLTPLLCRQLADLADAYSAgEIRLTVEQNVMLPNVDNDKLEALLAEPALAPSSPLQVFPSNIAgNTVSCTGAQFCGLAMIETKANADRIARMLdERVEVPKKLRVHWTGCPNSCGQVQAADIGLMG 531
                 566777777777888888888.67788888999999988775389*******************************************9987765555544556665555315669******************99999985679**************************986 PP

>> TIGR02064  dsrA: sulfite reductase, dissimilatory-type alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.0     0.012       6.8      83     181 ..     127     226 ..     120     271 .. 0.68
   2 ?   -1.3   0.0      0.27   1.6e+02     290     366 ..     279     355 ..     266     369 .. 0.71
   3 !   28.0   0.0   3.4e-10     2e-07      84     223 ..     398     533 ..     385     547 .. 0.80

  Alignments for each domain:
  == domain 1    score: 3.2 bits;  conditional E-value: 0.012
   TIGR02064  83 tvrvaqpsGkfystkylrqlidvwekyG..sGlvelhGstGdivllgtstevleeifeelr.elgtdlGGsGsalrtaesCvGkalCefacydtlkaftelt 181
                  +r+  p G    +k++r  +d+ e yG   G+v++  +  +i l g + e +++++++l+ + +t    + +++r++            + dt +++ +l 
  MMETSP1137-20121227|9407_1 127 MMRLRTPNGI-VNSKLMRLYADLVEPYGpeQGVVDITTR-QNIQLRGIRLEDADKVIDALHaNNQTSFQSALDNVRNLVGSPLAGIDPHEMVDTRDICNHLN 226
                 6888888886.567899**********966699998765.69******************988999999999999987433222222233455555555554 PP

  == domain 2    score: -1.3 bits;  conditional E-value: 0.27
   TIGR02064 290 GdergvtiliGgkaklkeGaklGslvvpfkveaeeeydeivelvekiidfWdeeg....kereriGelikrlglakflevi 366
                  +e g  ++iGg  ++k  a      vp+++ ++ ++++   l e+i+  + +eg    +++ r+  l++ +g+  f  ++
  MMETSP1137-20121227|9407_1 279 TNEMGFNVVIGGYMSIKRVAA----SVPINLWIPADVNHAYTLSEAILRIFRDEGsrgdRQKARLMWLVEEMGVDTFRSKV 355
                 567778888888888776553....57777889999999999999999999999822223455666666666666665554 PP

  == domain 3    score: 28.0 bits;  conditional E-value: 3.4e-10
   TIGR02064  84 vrvaqpsGkfystkylrqlidvwekyGsGlvelhGstGdivllgtstevleeifeelr...elgtdlGGsGsal.rtaesCvGkalCefacydtlkafteltkeyqdelhrPafPykfkikvsgCPndCvaaiarsdfaviGtW 223
                 v ++ p+G+  +  + rql+d+++ y +G + l  +  +++l  +++++le+++ e       ++ +    s++  ++ sC G   C +a+ +t++    + + +++ +++   P k+++  +gCPn C++ +  +d++++G+ 
  MMETSP1137-20121227|9407_1 398 VGIHVPTGRL-TPLLCRQLADLADAYSAGEIRLTVE-QNVMLPNVDNDKLEALLAEPAlapSSPLQVFP--SNIaGNTVSCTGAQFCGLAMIETKANADRIARMLDERVEV---PKKLRVHWTGCPNSCGQVQ-AADIGLMGAP 533
                 5566777774.44678****************9876.58999999*********986652555555555..455146679**************99999999988887776...57***************99.89*****974 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (600 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        94  (0.0229157); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.66u 0.18s 00:00:00.84 Elapsed: 00:00:00.55
# Mc/sec: 1439.88
//
Query:       MMETSP1137-20121227|9408_1  [L=258]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (258 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       125  (0.0304729); expected 82.0 (0.02)
Passed bias filter:                      101  (0.0246221); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.18s 00:00:00.41 Elapsed: 00:00:00.28
# Mc/sec: 1174.25
//
Query:       MMETSP1137-20121227|9409_1  [L=159]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (159 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        58  (0.0141394); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.13s 00:00:00.30 Elapsed: 00:00:00.28
# Mc/sec: 723.66
//
Query:       MMETSP1137-20121227|9410_1  [L=177]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (177 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       166  (0.0404681); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.13s 00:00:00.31 Elapsed: 00:00:00.35
# Mc/sec: 667.49
//
Query:       MMETSP1137-20121227|9411_1  [L=273]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (273 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       108  (0.0263286); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.17s 00:00:00.40 Elapsed: 00:00:00.37
# Mc/sec: 973.87
//
Query:       MMETSP1137-20121227|9412_1  [L=186]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (186 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        55  (0.0134081); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.15s 00:00:00.32 Elapsed: 00:00:00.31
# Mc/sec: 791.93
//
Query:       MMETSP1137-20121227|9413_1  [L=169]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (169 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        60  (0.014627); expected 82.0 (0.02)
Passed bias filter:                       38  (0.00926377); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.17s 00:00:00.34 Elapsed: 00:00:00.50
# Mc/sec: 446.12
//
Query:       MMETSP1137-20121227|9414_1  [L=251]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (251 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        97  (0.023647); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.12s 00:00:00.32 Elapsed: 00:00:00.35
# Mc/sec: 946.55
//
Query:       MMETSP1137-20121227|9415_1  [L=219]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      2e-05   22.3   0.3    3.5e-05   21.5   0.2    1.4  1  TIGR03042 PS_II_psbQ_bact: photosystem II protein PsbQ


Domain annotation for each model (and alignments):
>> TIGR03042  PS_II_psbQ_bact: photosystem II protein PsbQ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.5   0.2   8.6e-09   3.5e-05      83     140 ..     116     173 ..     103     175 .. 0.90

  Alignments for each domain:
  == domain 1    score: 21.5 bits;  conditional E-value: 8.6e-09
   TIGR03042  83 tylnqsLlpkdkkeakklakelkedLeklDeAAklqdkseaqkayqevaadldayldl 140
                   l + L +  +++a +l+ ++ ++L+ lDeA ++++    +ka +e++a l++yl+l
  MMETSP1137-20121227|9415_1 116 APLMSALGEDGQQKAAALSNAFADSLVALDEACRAKEPASQRKAVAELRAPLSDYLQL 173
                 45777889999********************************************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (219 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.20u 0.16s 00:00:00.36 Elapsed: 00:00:00.40
# Mc/sec: 722.64
//
Query:       MMETSP1137-20121227|9416_1  [L=486]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.015   12.1   6.0          2    5.1   0.1    4.1  4  TIGR00512 salvage_mtnA: S-methyl-5-thioribose-1-phosphate isomerase


Domain annotation for each model (and alignments):
>> TIGR00512  salvage_mtnA: S-methyl-5-thioribose-1-phosphate isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.0    0.0025        10      90     153 ..      96     161 ..      90     182 .. 0.71
   2 ?    5.1   0.1   0.00049         2     111     156 ..     206     251 ..     177     276 .. 0.82
   3 ?    1.3   0.0    0.0069        28     121     161 ..     303     345 ..     288     353 .. 0.81
   4 ?    2.1   0.0    0.0039        16     114     153 ..     353     392 ..     345     419 .. 0.73

  Alignments for each domain:
  == domain 1    score: 2.8 bits;  conditional E-value: 0.0025
   TIGR00512  90 vnlswalerlkealee..aatekelkealleeaeeileedleanrkigelgaellkkkaakkeklt 153
                 + + +al+rl+ ++ +    ++ ++ ++  +  +++++ dl+ ++++g+ g++ l+++ + +++l+
  MMETSP1137-20121227|9416_1  96 LKINKALNRLDLHCCAgiGDEVCKAFAESFKLNQALTRIDLSGCTALGDEGCKALSQSLKLNKALR 161
                 556666676655554433334445555666778999999****************99987665543 PP

  == domain 2    score: 5.1 bits;  conditional E-value: 0.00049
   TIGR00512 111 elkealleeaeeileedleanrkigelgaellkkkaakkekltvLt 156
                 ++ ++ l+  +++ + +l+++ +ig+ g++ l k  +++++l+v+ 
  MMETSP1137-20121227|9416_1 206 KALAETLKVNQTLRSINLSDCDRIGNEGLNALAKALKNNQRLRVIN 251
                 45566777888999999*******************9999999864 PP

  == domain 3    score: 1.3 bits;  conditional E-value: 0.0069
   TIGR00512 121 eeileedleanrkigelgaellkkkaakkekl.tv.LthCNtG 161
                  ++++ dl+ +  i ++g+++l ++ +++e+l ++ L +CN G
  MMETSP1137-20121227|9416_1 303 CTLTSIDLSYCYGINDAGCKVLVESLKRNEALvSMdLSYCNIG 345
                 56788899****************998885541446899**98 PP

  == domain 4    score: 2.1 bits;  conditional E-value: 0.0039
   TIGR00512 114 ealleeaeeileedleanrkigelgaellkkkaakkeklt 153
                 ++ l++ + +++ dl  +++ig+ g++ l ++ +++++lt
  MMETSP1137-20121227|9416_1 353 SQSLRANKVLQRVDLIGCNRIGDEGCTALAEGLQSNKALT 392
                 4556677788999*****************9996655543 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (486 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       136  (0.0331546); expected 82.0 (0.02)
Passed bias filter:                      103  (0.0251097); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.12s 00:00:00.51 Elapsed: 00:00:00.52
# Mc/sec: 1233.59
//
Query:       MMETSP1137-20121227|9417_1  [L=328]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        0.7    5.2  31.0       0.92    4.8  21.5    1.1  1  TIGR00927 2A1904: K+-dependent Na+/Ca+ exchanger
       0.81    5.7  11.0       0.93    5.5   7.6    1.1  1  TIGR00934 2a38euk: potassium uptake protein, Trk family
        1.9    4.7   7.7          3    4.0   5.3    1.4  1  TIGR00831 a_cpa1: Na+/H+ antiporter


Domain annotation for each model (and alignments):
>> TIGR00927  2A1904: K+-dependent Na+/Ca+ exchanger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8  21.5   0.00067      0.92     737     899 ..      30     202 ..      13     234 .. 0.52

  Alignments for each domain:
  == domain 1    score: 4.8 bits;  conditional E-value: 0.00067
   TIGR00927 737 dqeedpgsqgdvaeaeakgertgeeaeaeteaegekd.eesggeaeqegeseekaeeeseGeieaerkgedege..geieakeaevkGeeeeeeveaee..eteaeGdedegeieaeeeGeekededegeieakeevevegdedeteieae......eeaevkededeGeieae 899
                   +ed   q+++ ea a++   +  a+ae++a + ++ +++gg a+ ++ + e a ee  G++ a+  ++d +e  ge ++k+  +k e+ + + e+ e  +++ e    e e + ++  + k++e e++ +a ee+e++ +e+e + + e      +   v+e+ d+G  e e
  MMETSP1137-20121227|9417_1  30 SAKEDAEKQKEAREAAARAAAAKRAAKAEAKAIAGNPkKKKGGLAKMQKAAAEAAAEEAVGNVAADAYDDDVEEdtGEPKTKKELQKAEKRAAKAEEREyiNAQREA-IKEREQKRDAARRAKDEEREAKERAIEEAEAKRKEEEEKRKQEeydkwkDMFSVEEGADDGTAEEE 202
                 45677777877777777777777777776666554441456667777777788888899999999988776444115555555555555555444443311233333.333343333333333333333333333333333322222222100000022222333333322222 PP

>> TIGR00934  2a38euk: potassium uptake protein, Trk family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   7.6   0.00068      0.93     295     427 ..      50     183 ..      20     271 .. 0.57

  Alignments for each domain:
  == domain 1    score: 5.5 bits;  conditional E-value: 0.00068
   TIGR00934 295 sesrriqekikrrlstssiekns......qqnltrlaktksfdd.skavrlersktidraeasdleeldrakdfqkmveknvkaakrkkknfkkreanlklfeksryakksdrneedngnkkdasksneseevsldsee...n 427
                 +  r  + + k +                +  l +++k  ++   ++av+   +   d   + d+ e + +k+ qk  ++  ka +r+  n +++  + +  ++  + +  d+++e+++ ++++++ +  ee ++ ++e   +
  MMETSP1137-20121227|9417_1  50 AAKRAAKAEAKAI---------AgnpkkkKGGLAKMQKAAAEAAaEEAVGNVAADAYDDDVEEDTGEPKTKKELQKAEKRAAKAEEREYINAQREAIKEREQKRDAARRAKDEEREAKERAIEEAEAKRKEEEEKRKQEeydK 183
                 1111112222222.........1222222446677777766666667777777777777777777777777777777777777776666666655555544444444444444444444433333333333333333321231 PP

>> TIGR00831  a_cpa1: Na+/H+ antiporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   5.3    0.0022         3     384     495 ..       7     126 ..       2     200 .. 0.65

  Alignments for each domain:
  == domain 1    score: 4.0 bits;  conditional E-value: 0.0022
   TIGR00831 384 lvavviLfsllvqgvsLpilvkrkevaedsereke..eriaRaaaaeaa.lvalqkveerla....veedvakellkeleervve.lradg.eekvesdlaeknlerrvrlavldakraav 495
                 + av+ L++ lv  + L +  + +   ed+e++ke  e  aRaaaa+ a + + + ++ + +       +++k   +   e++v+ + ad  +++ve d +e + ++ +++a  +a +a+ 
  MMETSP1137-20121227|9417_1   7 ILAVIALIASLVIPTVLLLRTQ-QSAKEDAEKQKEarEAAARAAAAKRAaKAEAKAIAGNPKkkkgGLAKMQKAAAEAAAEEAVGnVAADAyDDDVEEDTGEPKTKKELQKAEKRAAKAEE 126
                 5566666655554444432222.33345566666522667898888655045555555443321112223333333333333443588886257899999987777777776666555543 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (328 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       674  (0.16431); expected 82.0 (0.02)
Passed bias filter:                      180  (0.043881); expected 82.0 (0.02)
Passed Vit filter:                        38  (0.00926377); expected 4.1 (0.001)
Passed Fwd filter:                        12  (0.0029254); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.53u 0.20s 00:00:00.73 Elapsed: 00:00:00.48
# Mc/sec: 901.93
//
Query:       MMETSP1137-20121227|9418_1  [L=715]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (715 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        97  (0.023647); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.12s 00:00:00.57 Elapsed: 00:00:00.62
# Mc/sec: 1522.13
//
Query:       MMETSP1137-20121227|9419_1  [L=108]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.7e-19   66.2   0.1    7.7e-19   66.0   0.1    1.0  1  TIGR00601 rad23: UV excision repair protein Rad23
  ------ inclusion threshold ------
      0.035   11.0   0.0      0.042   10.7   0.0    1.1  1  TIGR03418 chol_sulf_TF: putative choline sulfate-utilization transcription factor


Domain annotation for each model (and alignments):
>> TIGR00601  rad23: UV excision repair protein Rad23
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.0   0.1   3.8e-22   7.7e-19       1     100 [.       1      98 [.       1     105 [. 0.81

  Alignments for each domain:
  == domain 1    score: 66.0 bits;  conditional E-value: 3.8e-22
   TIGR00601   1 vkltlKtlkqqkfkidlepdetvkelKekie.sekg.kdayevaqqkLiyaGkiLsDdktvkeykikekdfvvvmvskkKavkakaaePaatpesaptptps 100
                 +k  lKt+k+  f+++++pd+ v ++Ke  + se+g  d ++ + +kLi++Gk+L + + ++ y ike+df+vvm sk+K      a+Pa ++++apt+tp+
  MMETSP1137-20121227|9419_1   1 MKCELKTVKGASFPVEVSPDTPVRKVKELAAaSEQGvADGWDADTMKLIHQGKVLDNTRDLASYSIKEGDFMVVMASKAKKPA---ATPA-ASAAAPTATPA 98 
                 67889**********************9765145554699*************************************999877...3333.34445555552 PP

>> TIGR03418  chol_sulf_TF: putative choline sulfate-utilization transcription factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   2.1e-05     0.042     229     280 ..      30      83 ..      25      90 .. 0.73

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 2.1e-05
   TIGR03418 229 aaiagqGvalGWagLvDelleaglLvravdesv..vserGYylvlperkredaa 280
                 aa  +qGva GW     +l+ +g++   + +++    + G ++v    k +++a
  MMETSP1137-20121227|9419_1  30 AAASEQGVADGWDADTMKLIHQGKVLDNTRDLAsySIKEGDFMVVMASKAKKPA 83 
                 8899*******************9998776554114456766665555555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (108 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       101  (0.0246221); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.15u 0.18s 00:00:00.32 Elapsed: 00:00:00.27
# Mc/sec: 527.96
//
Query:       MMETSP1137-20121227|9420_1  [L=306]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (306 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        65  (0.0158459); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.13s 00:00:00.37 Elapsed: 00:00:00.62
# Mc/sec: 651.43
//
Query:       MMETSP1137-20121227|9421_1  [L=370]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (370 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        77  (0.0187713); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.15s 00:00:00.42 Elapsed: 00:00:00.35
# Mc/sec: 1395.31
//
Query:       MMETSP1137-20121227|9422_1  [L=155]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (155 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       144  (0.0351048); expected 82.0 (0.02)
Passed bias filter:                      120  (0.029254); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.17s 00:00:00.35 Elapsed: 00:00:00.52
# Mc/sec: 393.43
//
Query:       MMETSP1137-20121227|9423_1  [L=54]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        29  (0.00706972); expected 82.0 (0.02)
Passed bias filter:                       29  (0.00706972); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.11s 00:00:00.23 Elapsed: 00:00:00.41
# Mc/sec: 173.84
//
Query:       MMETSP1137-20121227|9424_1  [L=402]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.8e-56  189.0   0.0    3.2e-56  188.8   0.0    1.0  1  TIGR03224 benzo_boxA: benzoyl-CoA oxygenase/reductase, BoxA protein
    1.1e-38  131.1   0.0    3.9e-33  112.7   0.0    2.1  2  TIGR01931 cysJ: sulfite reductase [NADPH] flavoprotein, alpha-component
    3.2e-08   30.7   0.0    4.9e-08   30.1   0.0    1.2  1  TIGR01941 nqrF: NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit
    2.9e-05   21.1   0.0    4.4e-05   20.5   0.0    1.2  1  TIGR02911 sulfite_red_B: sulfite reductase, subunit B
     0.0011   15.6   0.0     0.0017   15.0   0.0    1.3  1  TIGR02160 PA_CoA_Oxy5: phenylacetate-CoA oxygenase/reductase, PaaK subunit


Domain annotation for each model (and alignments):
>> TIGR03224  benzo_boxA: benzoyl-CoA oxygenase/reductase, BoxA protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  188.8   0.0   3.9e-59   3.2e-56     134     411 .]     112     402 .]      47     402 .] 0.86

  Alignments for each domain:
  == domain 1    score: 188.8 bits;  conditional E-value: 3.9e-59
   TIGR03224 134 vnlyaakapitatvvgnyrltdedaesdihhivldfgslpfpvlegqsigilppgtd.ekgkphylrqysvasprdgerprynnlaltvkrv.....tedhegnavrgvasnylcdlkkgdkvqvigpfgstflmpnh.pessilmictgtgsapmramterrrrr...rakgeggklllffgartkeelpyfgplqklp..kdfidinfafsrtpeep...kryvqdaireraadvaallkddntyiyvcglkgmeegvlealrevaeaagldwetleprlraegrlhlety 411
                  n + +kap  a++v   r+   +a  ++ hi +d g   +   egqs+g++ppg   ++gkp  +r ys+as r g+  r + ++l v+r      +++ e+ a +gv+sn+lcd + gd v v+gp g  +lmp+h p+++i+m+ tgtg ap r +  r   +    a ++ g   lf+g  + + l y    q++   ++     +a+sr+  +p   k y+qd + e+a+++++ l++ +++iy cglkgm  g+ e l++va++ g +wet   +l+++g+ h+e y
  MMETSP1137-20121227|9424_1 112 LNTFKPKAPHQASIVSARRIVGPNAPGEVCHIQIDTGGA-LKYWEGQSLGVIPPGLSpKTGKPNTVRLYSIASTRYGDDLRGDTVSLCVRRAlywdkERNAEDPAKKGVCSNFLCDSHPGDTVAVTGPTGKVMLMPEHdPKADIIMVATGTGIAPYRGFLRRLFFEqtpAAAAFQGLAWLFLGVANSDALLYDADWQDVAxsRNGSGSXYAISREQSRPdggKMYIQDRMAEHAEELFERLAN-GAHIYFCGLKGMMPGITEMLEKVATERGISWETTLEQLKQNGQWHVEVY 402
                 688999******************************986.6789***********763789******************************7322223455667889******************************9779****************99876544300144558999*******************9986226678899*****9888766689***************9985.79*********************************************98 PP

>> TIGR01931  cysJ: sulfite reductase [NADPH] flavoprotein, alpha-component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0   6.5e-07   0.00053     183     277 ..      72     162 ..      62     167 .. 0.76
   2 !  112.7   0.0   4.7e-36   3.9e-33     380     597 .]     173     402 .]     169     402 .] 0.80

  Alignments for each domain:
  == domain 1    score: 16.5 bits;  conditional E-value: 6.5e-07
   TIGR01931 183 aDvdyeaaaaeWseevlkalkekakksasavslseksaelqveeseyskknPfeaevlenqkitgrdskkdvrhieldledsglkyepGDaLGvw 277
                 +Dvd   aaa+ +e ++++   ++ +s ++  +   + ++++  +++  k+P +a++++ ++i g ++  +v hi +d ++  lky  G +LGv 
  MMETSP1137-20121227|9424_1  72 SDVDVSLAAAQVKELLVQQPI-QLPVSLEVEPYW--DVKNNLPLNTFKPKAPHQASIVSARRIVGPNAPGEVCHIQIDTGG-ALKYWEGQSLGVI 162
                 566666666665555554433.344444444444..5666677789999*****************************766.6**********97 PP

  == domain 2    score: 112.7 bits;  conditional E-value: 4.7e-36
   TIGR01931 380 pltprLYsiassqke...vddevhltvgvvkk.....eaegrarlGgasgflaerlkeddtvkvyveenenfrlPe.dkdtpiimigpGtGvaPfrafl......qereeegaeGknWlffGnphfaeDfLYqveWqkylkkgvltkldlafsrDqke....kiYvqdrlreqgkelfeWlqeGahiYvCGdakkmakDvekaLldviakegaldaeeaeeyleelrkekrYqrDvY 597
                 p t rLYsias++      +d v l v  + +     +ae  a++G++s+fl++  +++dtv v   + +   +Pe d++ +iim+++GtG+aP+r+fl      q  ++   +G +Wlf G  + ++  LY ++Wq    +        a sr+q      k+Y+qdr+ e+++elfe l +GahiY CG  k m   + ++L +v ++ g ++ e     le+l+++ +++ +vY
  MMETSP1137-20121227|9424_1 173 PNTVRLYSIASTRYGddlRGDTVSLCVRRALYwdkerNAEDPAKKGVCSNFLCD-SHPGDTVAVTGPTGKVMLMPEhDPKADIIMVATGTGIAPYRGFLrrlffeQTPAAAAFQGLAWLFLGVAN-SDALLYDADWQDVAXSRNGSGSXYAISREQSRpdggKMYIQDRMAEHAEELFERLANGAHIYFCG-LKGMMPGITEMLEKVATERG-ISWET---TLEQLKQNGQWHVEVY 402
                 6689*******9864112679******99865222224556689**********.89******************758999****************98333332233455559********998.5679********998877777777777777633344*****************************.8889999*999999988887.45554...4677777777776666 PP

>> TIGR01941  nqrF: NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.1   0.0     6e-11   4.9e-08     204     395 ..     174     380 ..     168     383 .. 0.71

  Alignments for each domain:
  == domain 1    score: 30.1 bits;  conditional E-value: 6e-11
   TIGR01941 204 etvrayslan..ypeek..giiklnvriatppfa....naeippGkmssyifslkpGdkvtvsGpfGeffv...kdtdaelvfigGGaGmaplrshi....ldllkrlkskrkis.fwyGarskrevfyeedfdeleaendnfkyhvalsdplpednwtGytgfihnvlyenylkdhda.pediefymcGpplmnaaviklledlGver 395
                 +tvr ys+a+  y ++   +++ l vr a    +    +   + G++s ++ +  pGd v v+Gp G++ +   +d +a++++++ G+G+ap r  +    +++     + + +  ++ G       +y+ d+++++   +      a+s  +     +G   +i + + e   + ++   +  + y cG   m   + ++le++  er
  MMETSP1137-20121227|9424_1 174 NTVRLYSIAStrYGDDLrgDTVSLCVRRALYWDKernaEDPAKKGVCSNFLCDSHPGDTVAVTGPTGKVMLmpeHDPKADIIMVATGTGIAPYRGFLrrlfFEQTPAAAAFQGLAwLFLGVANSDALLYDADWQDVAXSRNGSGSXYAISREQSR--PDGGKMYIQDRMAEHAEELFERlANGAHIYFCGLKGMMPGITEMLEKVATER 380
                 78999**997558887533799*****99876655543445789************************9864446889*************9998761111444444445555552456888888999999999998777666666666655432..3455666766666554433332134567788998888888999988877765 PP

>> TIGR02911  sulfite_red_B: sulfite reductase, subunit B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   0.0   5.4e-08   4.4e-05      67     151 ..     218     308 ..     214     333 .. 0.79

  Alignments for each domain:
  == domain 1    score: 20.5 bits;  conditional E-value: 5.4e-08
   TIGR02911  67 gkvtdevfelkegdklflrgpygngfdvdnykdk.elvvvaggtgvapvkgvve.yfaknskevkeld....livgfktredilfkedlae 151
                 g+ ++ + + + gd++ + gp g  + + ++  k ++++va gtg+ap +g ++  f +++  +  ++    l +g  + +++l+  d ++
  MMETSP1137-20121227|9424_1 218 GVCSNFLCDSHPGDTVAVTGPTGKVMLMPEHDPKaDIIMVATGTGIAPYRGFLRrLFFEQTPAAAAFQglawLFLGVANSDALLYDADWQD 308
                 77888899999*************9999877765389**************9974344444444443322247789999999999988665 PP

>> TIGR02160  PA_CoA_Oxy5: phenylacetate-CoA oxygenase/reductase, PaaK subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   2.1e-06    0.0017      73     227 ..     216     374 ..     186     392 .. 0.67

  Alignments for each domain:
  == domain 1    score: 15.0 bits;  conditional E-value: 2.1e-06
   TIGR02160  73 eGGlfstwaneeiraGdtlevmaPqGrftskldaerakhyvavaaGsGitPilaivktvlaaep..kstft....lvyanrrsasvmfaeeladlkdkypqrfallhvlsreereaellsGrldgeklkalldsli.evdevdeaflcGPaalvddaedalk 227
                 + G+ s+++ +  ++Gdt+ v  P+G+    ++ + +   ++va+G+Gi+P    ++  + ++    + f+    l+ +  +s+ +++  + +d+        + +  +sre+   +  +  +  +++++  ++l  ++ +  + ++cG ++++  + + l+
  MMETSP1137-20121227|9424_1 216 KKGVCSNFLCDS-HPGDTVAVTGPTGKVMLMPEHDPKADIIMVATGTGIAPYRGFLRRLFFEQTpaAAAFQglawLFLGVANSDALLYDADWQDVAXSRNGSGSXY-AISREQSRPDGGKMYIQ-DRMAEHAEELFeRLANGAHIYFCGLKGMMPGITEMLE 374
                 568889999886.89**************99999999**************8776655443332012222222226777777777777777776665555444443.34666666664444443.3444444444413455667777777777776666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (402 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       105  (0.0255973); expected 82.0 (0.02)
Passed bias filter:                      104  (0.0253535); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.32u 0.23s 00:00:00.55 Elapsed: 00:00:00.59
# Mc/sec: 899.32
//
Query:       MMETSP1137-20121227|9425_1  [L=411]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (411 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        65  (0.0158459); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.23s 00:00:00.46 Elapsed: 00:00:00.43
# Mc/sec: 1261.57
//
Query:       MMETSP1137-20121227|9426_1  [L=42]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (42 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        15  (0.00365675); expected 82.0 (0.02)
Passed bias filter:                       14  (0.00341297); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.18s 00:00:00.27 Elapsed: 00:00:00.57
# Mc/sec: 95.58
//
Query:       MMETSP1137-20121227|9427_1  [L=453]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0049   14.0  38.6     0.0071   13.4  26.7    1.2  1  TIGR02794 tolA_full: protein TolA


Domain annotation for each model (and alignments):
>> TIGR02794  tolA_full: protein TolA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4  26.7   1.7e-06    0.0071      66     190 ..      48     166 ..      21     187 .. 0.76

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 1.7e-06
   TIGR02794  66 pkpeepkqerqkkleqqaeeakkkqaaeqarqkelekqraaaekaakkaeeaakekeekkkqaeeakakqaaEa..kakaeaeaKa.ekkakeeAakkaEeeakakaaaeakkkaEaeeakkkaeaea 190
                  +p+ ++ +r+  ++++a++a ++q a ++r k+l +++++aek a+ +eea+    e+++ a e k+  ++E+  + k  +ea+  e+++  eA++ aEee+  +a  +++++ E   a++ ae e+
  MMETSP1137-20121227|9427_1  48 SNPQAETADRALDAKRKAAKALADQRAAEKRAKRLHAEELRAEK-ARMEEEARL---EQERVANELKRI-EDERiaEEKRIEEARIaEQQR-NEANRIAEEERLEEARIAEQQRNE---ANRIAEDER 166
                 468888999999999999999999999999*****999999999.555888887...678999999977.888864444455555545555.788********7666655555555...455555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (453 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       308  (0.0750853); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.28u 0.25s 00:00:00.53 Elapsed: 00:00:00.55
# Mc/sec: 1087.11
//
Query:       MMETSP1137-20121227|9428_1  [L=43]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (43 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        43  (0.0104827); expected 82.0 (0.02)
Passed bias filter:                       40  (0.00975134); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.13s 00:00:00.24 Elapsed: 00:00:00.23
# Mc/sec: 246.76
//
Query:       MMETSP1137-20121227|9429_1  [L=272]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (272 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       119  (0.0290102); expected 82.0 (0.02)
Passed bias filter:                       42  (0.0102389); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.12s 00:00:00.34 Elapsed: 00:00:00.40
# Mc/sec: 897.53
//
Query:       MMETSP1137-20121227|9430_1  [L=110]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      1e-46  157.8   0.1    1.1e-46  157.7   0.1    1.0  1  TIGR01349 PDHac_trf_mito: pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase
    1.8e-22   77.5   0.1    1.9e-22   77.4   0.1    1.0  1  TIGR01348 PDHac_trf_long: dihydrolipoyllysine-residue acetyltransferase
      2e-22   77.8   0.0    2.2e-22   77.6   0.0    1.0  1  TIGR01347 sucB: dihydrolipoyllysine-residue succinyltransferase, E2 component of oxoglutarate dehydrogenase (succinyl-transferring) complex
    7.4e-19   65.8   0.0    8.3e-19   65.6   0.0    1.0  1  TIGR02927 SucB_Actino: 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase


Domain annotation for each model (and alignments):
>> TIGR01349  PDHac_trf_mito: pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  157.7   0.1   1.1e-49   1.1e-46     332     437 .]       2     110 .]       1     110 [] 0.93

  Alignments for each domain:
  == domain 1    score: 157.7 bits;  conditional E-value: 1.1e-49
   TIGR01349 332 elakkArenkLkpeefqgGtftisnlGmlgikqFaaiinpPqaailavgasedkavvknkee...kglevasilsvtlsvDHRviDGavgAeflkelkkllenPielll 437
                  la+kA+enkLkpeef gGtftisnlGm+g+kqF+aiin Pqa+ila+g +++ +v +  ++   +++   s + vtls+DHR++DGa++A++l++++k++enP+++ll
  MMETSP1137-20121227|9430_1   2 ALATKAKENKLKPEEFIGGTFTISNLGMMGVKQFTAIINGPQACILAIGGTKKLVVPNDGPDaatNPFVAKSFMAVTLSSDHRIVDGALAATWLQAFQKIIENPLKMLL 110
                 589*************************************************99888765542227999**************************************98 PP

>> TIGR01348  PDHac_trf_long: dihydrolipoyllysine-residue acetyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.4   0.1   1.9e-25   1.9e-22     485     587 .]       2     110 .]       1     110 [] 0.86

  Alignments for each domain:
  == domain 1    score: 77.4 bits;  conditional E-value: 1.9e-25
   TIGR01348 485 dlakkardkkltademqGacftisslGgiGgtaftPivnaPevailGv..sksalePvWdgk.....efePrlllPlslsydhrvidGadaarflkylselladirrlll 587
                  la ka+++kl+++e  G++ftis+lG +G ++ft i+n P+  il +  +k ++ P           f+ + ++ ++ls dhr++dGa aa +l+  +++++++ ++ll
  MMETSP1137-20121227|9430_1   2 ALATKAKENKLKPEEFIGGTFTISNLGMMGVKQFTAIINGPQACILAIggTKKLVVPNDG-PdaatnPFVAKSFMAVTLSSDHRIVDGALAATWLQAFQKIIENPLKMLL 110
                 589*****************************************9966225666666432.1233448**********************************99988875 PP

>> TIGR01347  sucB: dihydrolipoyllysine-residue succinyltransferase, E2 component of oxoglutarate dehydrogenase (succinyl-transferring) complex
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.6   0.0   2.2e-25   2.2e-22     300     402 ..       2     110 .]       1     110 [] 0.89

  Alignments for each domain:
  == domain 1    score: 77.6 bits;  conditional E-value: 2.2e-25
   TIGR01347 300 elakkaregklaledltgGtFtitnGGvfGsllstPiinppqsaiLGmhaik......eRPvavngkieirPmmYlaLsYDhRliDGkeavtFLvkikelledperlll 402
                  la+ka+e+kl+ e++ gGtFti+n G+ G    t iin+pq+ iL + + k      + P a  + ++ +  m + Ls DhR++DG  a t+L+  ++++e+p ++ll
  MMETSP1137-20121227|9430_1   2 ALATKAKENKLKPEEFIGGTFTISNLGMMGVKQFTAIINGPQACILAIGGTKklvvpnDGPDAATNPFVAKSFMAVTLSSDHRIVDGALAATWLQAFQKIIENPLKMLL 110
                 589*******************************************88776611112245667777899999***********************************97 PP

>> TIGR02927  SucB_Actino: 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.6   0.0   8.1e-22   8.3e-19     470     569 ..       3     103 ..       1     106 [. 0.84

  Alignments for each domain:
  == domain 1    score: 65.6 bits;  conditional E-value: 8.1e-22
   TIGR02927 470 laarardnklkpdelsGgtftitniGseGalfdtpilvppqaailGtGaivkrprvikd..edGnesiairsvvylpltydhrlvdGadagrflttikkrle 569
                 la +a++nklkp+e+ Ggtfti+n+G  G    t i++ pqa+il +G  +k  +v +d  +  ++    +s + ++l+ dhr+vdGa a+ +l + +k +e
  MMETSP1137-20121227|9430_1   3 LATKAKENKLKPEEFIGGTFTISNLGMMGVKQFTAIINGPQACILAIGGTKK-LVVPNDgpDAATNPFVAKSFMAVTLSSDHRIVDGALAATWLQAFQKIIE 103
                 899*********************************************9765.3443331122334456799999*******************99998877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (110 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        74  (0.01804); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.15u 0.13s 00:00:00.28 Elapsed: 00:00:00.30
# Mc/sec: 483.96
//
Query:       MMETSP1137-20121227|9431_1  [L=324]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (324 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       166  (0.0404681); expected 82.0 (0.02)
Passed bias filter:                      110  (0.0268162); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.15s 00:00:00.42 Elapsed: 00:00:01.00
# Mc/sec: 427.64
//
Query:       MMETSP1137-20121227|9432_1  [L=497]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   3.2e-102  340.4   0.1    2.3e-62  208.9   0.0    2.2  2  TIGR01307 pgm_bpd_ind: 2,3-bisphosphoglycerate-independent phosphoglycerate mutase
    1.6e-07   28.7   0.1    5.1e-07   27.0   0.0    1.7  2  TIGR00306 apgM: 2,3-bisphosphoglycerate-independent phosphoglycerate mutase, archaeal form
     0.0027   14.4   0.0     0.0045   13.7   0.0    1.2  1  TIGR01696 deoB: phosphopentomutase
     0.0039   13.8   0.0     0.0079   12.8   0.0    1.5  1  TIGR02535 hyp_Hser_kinase: proposed homoserine kinase


Domain annotation for each model (and alignments):
>> TIGR01307  pgm_bpd_ind: 2,3-bisphosphoglycerate-independent phosphoglycerate mutase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  129.1   0.3   3.6e-41   3.7e-38       7     157 ..       1     152 [.       1     173 [. 0.91
   2 !  208.9   0.0   2.2e-65   2.3e-62     242     498 ..     211     489 ..     189     494 .. 0.86

  Alignments for each domain:
  == domain 1    score: 129.1 bits;  conditional E-value: 3.6e-41
   TIGR01307   7 ilDGyGlse.eedenailaaktPvldelieakp.yslldasgldvGLPk.gqmGnsevGhlniGaGRvvyqdlvrieqaikdgelfendalleaidrvkeaekklhllGLlsdGGvhshedhllalvelaakrgiekvvlhlftDGRDtapksa 157
                 ilDG+G ++ ++++na+ +a+tP++d l + +  + +l+a+g +vGLP+   mGnsevGh ++GaG++  q+   ++ ++++g++f+ d    + +    ae+++h +GLlsdGGvhs  + l+ +v+ aak g++k+  h++tDGRD+++++a
  MMETSP1137-20121227|9432_1   1 ILDGFGENKvKDKYNAVHTANTPCVDGLRAVSNrFRTLQAHGPAVGLPSmDDMGNSEVGHNALGAGKIYAQGAKLVDINLESGQIFKDDGWQYVKS--SFAENTIHFIGLLSDGGVHSRCNQLHQMVQQAAKDGAKKIRCHVLTDGRDVPAEQA 152
                 89****98835589**************87554399************7368************************************99765544..555799*********************************************98765 PP

  == domain 2    score: 208.9 bits;  conditional E-value: 2.2e-65
   TIGR01307 242 aalkdddaviflnfRaDRaReltrllvd.adfddfkrekakklefvtlteYdetlpvavaf..ppeelknvlgevlakkdlkqlriaetekYahvtfffnGGveeefkgeertlipspk.vatYDlaPemsakavtdkllealeegkfdlvvvnyanpDmvGhtGkfeaavkaveavDkelgrivealkkvgitllltaDhGnaeemkdeaen.............pvtahtvnpvpfvlve...pknvkavke..ggvLadiaptiLellgleqPaem 498
                   ++d+dav+ +nfR+DR+ e+t+++   ++f++f+re+++k++fv l++Yd +l+++  +  pp +++ + ge+ a+++++ +  +et k+ hvtff nG +   f++   t ++ p     ++++P m a+++td+ ++al++g++d++ vnyanpDmvGhtG+++a+  a e  D +l+ +++a+++ ++  ++taDhGna++m + a++             p t+ht  pvp+++ +   p+nv +  +   + La++ +ti +l+g e+Pa+ 
  MMETSP1137-20121227|9432_1 211 GPIEDNDAVVIFNFRSDRVLEITKAFEGgEEFNKFNRERVPKVNFVGLMQYDGDLKLPTRYlvPPPSITKTSGEYAAHNGMRTFACSETQKFGHVTFFWNGNRSGYFDEKLETYVEIPSdKCVFNEKPLMKAREITDTSIAALKSGRYDVLRVNYANPDMVGHTGDLAATTTACEFCDSCLKDLLDAVNELNGIFIVTADHGNADDMVQRAKKtnepltakdgkllPLTSHTLAPVPVFIGGkglPDNVVFRDDlpDAGLANVTATIFNLMGYEAPADY 489
                 5699**********************8779***********************9887765444********************************************98666665554313679***********************************************************************************86544212333334444447899*******9999877777765554433456*****************976 PP

>> TIGR00306  apgM: 2,3-bisphosphoglycerate-independent phosphoglycerate mutase, archaeal form
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.0   0.0   4.9e-10   5.1e-07     281     342 ..     349     412 ..     337     429 .. 0.88
   2 ?   -1.5   0.0      0.23   2.3e+02     348     369 ..     439     459 ..     436     463 .. 0.84

  Alignments for each domain:
  == domain 1    score: 27.0 bits;  conditional E-value: 4.9e-10
   TIGR00306 281 lieale..eyDfvlvhvkgaDEagHdgdaeeKvrviEkiDelivgkllalkldetlliltaDHs 342
                  i al+   yD++ v+  ++D +gH+gd+     + E  D+ +   l a+++ + ++i+taDH 
  MMETSP1137-20121227|9432_1 349 SIAALKsgRYDVLRVNYANPDMVGHTGDLAATTTACEFCDSCLKDLLDAVNELNGIFIVTADHG 412
                 566666557***********************************8777***************6 PP

  == domain 2    score: -1.5 bits;  conditional E-value: 0.23
   TIGR00306 348 kiHsadpvPivlvgkgvrvDeV 369
                   H+  pvP+ + gkg   D+V
  MMETSP1137-20121227|9432_1 439 TSHTLAPVPVFIGGKGL-PDNV 459
                 679***********998.6666 PP

>> TIGR01696  deoB: phosphopentomutase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   0.0   4.4e-06    0.0045     256     331 ..     344     420 ..     326     430 .. 0.81

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 4.4e-06
   TIGR01696 256 dgldkvikelkedftgisfanlvdfdalyGhrrdkeGyaaaleefdarlpellsklre.ddlliltadhGn.dptatG 331
                 +  d  i  lk    ++  +n+ + d   Gh  d +  ++a e  d+ l +ll  ++e + ++i+tadhGn d + + 
  MMETSP1137-20121227|9432_1 344 EITDTSIAALKSGRYDVLRVNYANPDM-VGHTGDLAATTTACEFCDSCLKDLLDAVNElNGIFIVTADHGNaDDMVQR 420
                 566888888888888888889988885.6***************************995679********84555555 PP

>> TIGR02535  hyp_Hser_kinase: proposed homoserine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.8   0.0   7.7e-06    0.0079     276     342 ..     347     412 ..     342     431 .. 0.81

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 7.7e-06
   TIGR02535 276 eaaleaLee..kDfvvvhveapDeagheGdlekkikaieeiDkrvvgkllealkksdekvrilvlpDhp 342
                 ++++ aL+   +D++ v    pD +gh Gdl++   a e  D+  ++ ll+a+++ +     +v++Dh 
  MMETSP1137-20121227|9432_1 347 DTSIAALKSgrYDVLRVNYANPDMVGHTGDLAATTTACEFCDS-CLKDLLDAVNELNG--IFIVTADHG 412
                 56788887533899999999*******************9997.6899*****99888..778999995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (497 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       118  (0.0287665); expected 82.0 (0.02)
Passed bias filter:                      110  (0.0268162); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.40u 0.19s 00:00:00.59 Elapsed: 00:00:00.54
# Mc/sec: 1214.79
//
Query:       MMETSP1137-20121227|9433_1  [L=338]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (338 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       176  (0.0429059); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.16s 00:00:00.46 Elapsed: 00:00:00.30
# Mc/sec: 1487.08
//
Query:       MMETSP1137-20121227|9434_1  [L=36]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (36 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        51  (0.012433); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.18s 00:00:00.28 Elapsed: 00:00:00.24
# Mc/sec: 197.98
//
Query:       MMETSP1137-20121227|9436_1  [L=272]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (272 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       116  (0.0282789); expected 82.0 (0.02)
Passed bias filter:                      103  (0.0251097); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.17s 00:00:00.43 Elapsed: 00:00:00.27
# Mc/sec: 1329.67
//
Query:       MMETSP1137-20121227|9437_1  [L=562]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.2e-12   42.6   0.1    5.5e-12   42.2   0.1    1.1  1  TIGR03903 TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
      1e-06   26.2   0.0      2e-06   25.2   0.0    1.4  1  TIGR03724 arch_bud32: Kae1-associated kinase Bud32
    0.00086   15.8   0.0     0.0014   15.1   0.0    1.2  1  TIGR01982 UbiB: 2-polyprenylphenol 6-hydroxylase


Domain annotation for each model (and alignments):
>> TIGR03903  TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.2   0.1     4e-15   5.5e-12       3     132 ..     216     344 ..     214     351 .. 0.88

  Alignments for each domain:
  == domain 1    score: 42.2 bits;  conditional E-value: 4e-15
   TIGR03903   3 ghkvaikllRedaa...eeerlvaRFrReialCarLshPnivaLlDsGeaedgllFavFeyveGrtlrevLaadGaLpaaetgrLmlqvLDalaaahdaGvvhRDLkPqnimvsaadveshakvLDFGigaLl 132
                 g++ a+k++ ++ +      + +++   e  l a LshP +v+Ll   + ++ +l  v ++v+   l e + ++  L+a +   +++ v+  la  h + v++RDLkP+n+++    ++ h +++D G++a  
  MMETSP1137-20121227|9437_1 216 GKRYAMKVMHKEMMrrcLGSQWRKKIWLEKDLMASLSHPMLVNLLYAFQNQE-FLVLVMDLVPAGDLSEFVLTKKRLTADQVRFVVMEVVCVLAYCHTQNVLYRDLKPENLLID---EQGHVRLIDMGLAARI 344
                 6778899998887744444567788888999**************9998887.***********************************************************95...56688999***99865 PP

>> TIGR03724  arch_bud32: Kae1-associated kinase Bud32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.2   0.0   1.5e-09     2e-06      47     139 ..     244     344 ..     200     351 .. 0.72

  Alignments for each domain:
  == domain 1    score: 25.2 bits;  conditional E-value: 1.5e-09
   TIGR03724  47 EarllseakkagvntPvvydvdpeek.kivmeyiegkklkdlleekel.......ellkevGelvgklHkagivhgDlttsNiiv.kddklyliDfGLgkks 139
                 E  l++++ +  + + ++y ++++e+  +vm+ +   +l++ + +k+         ++ ev  +++ +H +++++ Dl ++N+++ +++++ liD+GL+ + 
  MMETSP1137-20121227|9437_1 244 EKDLMASLSHP-MLVNLLYAFQNQEFlVLVMDLVPAGDLSEFVLTKKRltadqvrFVVMEVVCVLAYCHTQNVLYRDLKPENLLIdEQGHVRLIDMGLAARI 344
                 44444444433.556677888887762689*********99988877678988877788999999********************5578999******9764 PP

>> TIGR01982  UbiB: 2-polyprenylphenol 6-hydroxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0     1e-06    0.0014     256     311 ..     294     349 ..     264     353 .. 0.74

  Alignments for each domain:
  == domain 1    score: 15.1 bits;  conditional E-value: 1e-06
   TIGR01982 256 dlkalaenlvesflkqvlrdgfFHaDlHpGNilvakdgkiialDfGivgrlseeer 311
                 d+ +     v  +l+    +++   Dl p N+l++++g++ ++D+G+ +r+s+++ 
  MMETSP1137-20121227|9437_1 294 DQVRFVVMEVVCVLAYCHTQNVLYRDLKPENLLIDEQGHVRLIDMGLAARISKKQP 349
                 4444445556667777778899999***************************9975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (562 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        96  (0.0234032); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.41u 0.17s 00:00:00.57 Elapsed: 00:00:00.47
# Mc/sec: 1578.25
//
Query:       MMETSP1137-20121227|9438_1  [L=208]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (208 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        53  (0.0129205); expected 82.0 (0.02)
Passed bias filter:                       41  (0.00999512); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.18s 00:00:00.39 Elapsed: 00:00:00.28
# Mc/sec: 946.68
//
Query:       MMETSP1137-20121227|9439_1  [L=538]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (538 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       222  (0.0541199); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.14s 00:00:00.52 Elapsed: 00:00:00.38
# Mc/sec: 1868.69
//
Query:       MMETSP1137-20121227|9440_1  [L=653]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (653 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       180  (0.043881); expected 82.0 (0.02)
Passed bias filter:                      130  (0.0316919); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.47u 0.18s 00:00:00.64 Elapsed: 00:00:00.45
# Mc/sec: 1915.31
//
Query:       MMETSP1137-20121227|9441_1  [L=198]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (198 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        74  (0.01804); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.13s 00:00:00.31 Elapsed: 00:00:00.34
# Mc/sec: 768.64
//
Query:       MMETSP1137-20121227|9442_1  [L=59]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (59 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        42  (0.0102389); expected 82.0 (0.02)
Passed bias filter:                       42  (0.0102389); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.25
# Mc/sec: 311.49
//
Query:       MMETSP1137-20121227|9443_1  [L=185]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00054   17.5   0.0       0.12    9.8   0.0    2.0  2  TIGR00655 PurU: formyltetrahydrofolate deformylase
  ------ inclusion threshold ------
      0.043   11.7   0.0      0.068   11.1   0.0    1.3  1  TIGR01633 phi3626_gp14_N: putative phage tail component, N-terminal domain


Domain annotation for each model (and alignments):
>> TIGR00655  PurU: formyltetrahydrofolate deformylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.0   0.0   0.00082       1.7       3      47 ..      25      69 ..      23      88 .. 0.77
   2 !    9.8   0.0   5.8e-05      0.12       2      51 ..      94     143 ..      93     173 .. 0.74

  Alignments for each domain:
  == domain 1    score: 6.0 bits;  conditional E-value: 0.00082
   TIGR00655  3 LlvscpdqkGlvakistiiakkganivkndefvdeetkrflarve 47
                L+ s p ++G+v+++s++++ ++ n++ + + + e +  +l+ v 
  MMETSP1137-20121227|9443_1 25 LQASGPHTPGFVQTLSETVFAHKGNVMGTKKVLLEGHFSMLMSVW 69
                6778899*******************9988776555555555555 PP

  == domain 2    score: 9.8 bits;  conditional E-value: 5.8e-05
   TIGR00655   2 iLlvscpdqkGlvakistiiakkganivkndefvdeetkrflarvelele 51 
                 +L v+c+ ++G++ ++++++ ++g  + + d  ++ +++++   +e  ++
  MMETSP1137-20121227|9443_1  94 RLVVECKQKPGIILALTKLLKDAGCTLSHLDTNTQLKEGQMWFLLECAVS 143
                 699***************************99998887775544444433 PP

>> TIGR01633  phi3626_gp14_N: putative phage tail component, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   3.3e-05     0.068      53      88 ..     140     175 ..     125     178 .. 0.84

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 3.3e-05
   TIGR01633  53 vkikaisprdlrelkreLaalLnsqedkkLiFsDep 88 
                   +++ ++++l+el+++L+++ ++    kLiF+  p
  MMETSP1137-20121227|9443_1 140 CAVSVPDADSLEELEDQLRFWADEMATTKLIFDQWP 175
                 45667789************************9766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (185 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        74  (0.01804); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.20u 0.16s 00:00:00.36 Elapsed: 00:00:00.33
# Mc/sec: 739.94
//
Query:       MMETSP1137-20121227|9444_1  [L=97]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (97 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        49  (0.0119454); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.13s 00:00:00.26 Elapsed: 00:00:00.28
# Mc/sec: 441.48
//
Query:       MMETSP1137-20121227|9446_1  [L=221]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (221 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        98  (0.0238908); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.15s 00:00:00.38 Elapsed: 00:00:00.27
# Mc/sec: 1080.36
//
Query:       MMETSP1137-20121227|9447_1  [L=876]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00016   19.0   0.3     0.0011   16.2   0.0    2.3  3  TIGR02427 protocat_pcaD: 3-oxoadipate enol-lactonase
    0.00049   17.6   0.8     0.0013   16.3   0.5    1.6  1  TIGR01738 bioH: putative pimeloyl-BioC--CoA transferase BioH
     0.0013   16.0   0.0     0.0082   13.4   0.0    2.2  2  TIGR03695 menH_SHCHC: 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase


Domain annotation for each model (and alignments):
>> TIGR02427  protocat_pcaD: 3-oxoadipate enol-lactonase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0      0.15   2.1e+02      29      63 ..     232     267 ..     230     302 .. 0.75
   2 !   16.2   0.0     8e-07    0.0011       8     111 ..     538     641 ..     534     651 .. 0.92
   3 ?   -3.2   0.0      0.69   9.4e+02      38      78 ..     733     771 ..     724     774 .. 0.71

  Alignments for each domain:
  == domain 1    score: -1.1 bits;  conditional E-value: 0.15
   TIGR02427  29 wdkvlealtkdfrvlryDkrGHGlS.dvpegpysie 63 
                 ++   ++l++++++ r D   HG+S  +++g+ + +
  MMETSP1137-20121227|9447_1 232 HERRRKRLQEQIAMARRDAAQHGSStGATAGDRATD 267
                 566778999999999999999999933445554444 PP

  == domain 2    score: 16.2 bits;  conditional E-value: 8e-07
   TIGR02427   8 gaeadkpvlvlinSLGtdlrlwdkvlealtkdfrvlryDkrGHGlSdvpegpysiedladdvlallDalgiekaavcGlSlGGliaqaLaarrpdrvealvlsn 111
                 g+ a++++lv+i  +G   + + + +++ +++ + + + + G  +  + ++p s   +a+ + + l + g+e+a+v+G SlG + a +   ++p +v++lvl++
  MMETSP1137-20121227|9447_1 538 GDGASRKALVFIHGIGVGPAPYLHFVQRAAREGAAVIVVELGAVAQRISAAPPSAPRFAQLLRQALRRHGLESAVVAGHSLGSAYAVYAHRHAPSLVSSLVLID 641
                 56668999************999999999999988888899************************************************************976 PP

  == domain 3    score: -3.2 bits;  conditional E-value: 0.69
   TIGR02427  38 kdfrvlryDkrGHGlSdvpegpysiedladdvlallDalgi 78 
                 + +rvl+++  GHG+  + e   + e la  + +l D+l +
  MMETSP1137-20121227|9447_1 733 RGVRVLALEGVGHGAWLANER--AREALAAAIRELRDTLTV 771
                 668899999999998766554..357777777777777765 PP

>> TIGR01738  bioH: putative pimeloyl-BioC--CoA transferase BioH
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.5   9.2e-07    0.0013       3     101 ..     542     645 ..     540     652 .. 0.83

  Alignments for each domain:
  == domain 1    score: 16.3 bits;  conditional E-value: 9.2e-07
   TIGR01738   3 gvkklvLihGWglnaevfadlvee.LsahftlslvDLPGyGdsaelralslaevae....ailaqapakaiwlGWsLGGLvalhlalthpdkvrsLvlvasspk 101
                 + k+lv ihG g+  + + + v++  ++   + +v+L    +     + s +  a+    a+  +  + a++ G sLG   a+++  + p  v+sLvl+   ++
  MMETSP1137-20121227|9447_1 542 SRKALVFIHGIGVGPAPYLHFVQRaAREGAAVIVVELGAVAQRISAAPPSAPRFAQllrqALRRHGLESAVVAGHSLGSAYAVYAHRHAPSLVSSLVLIDPIAC 645
                 6689**********99998887761577899*********99999999888888762222566666778*****************************988777 PP

>> TIGR03695  menH_SHCHC: 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.0     6e-06    0.0082       2     101 ..     543     639 ..     542     642 .. 0.79
   2 ?   -0.8   0.0      0.13   1.8e+02      18      67 ..     725     772 ..     720     778 .. 0.75

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 6e-06
   TIGR03695   2 kpvlvlLHGflgskedwqal.ieeleekfsvlalDLpgHGkskslkekeakdfeeaaqellkelleklkiekviLvGYSlGGRialalaleaperleglil 101
                 +++lv++HG+    + + ++ +++ +e   v++++L   G+ ++  + ++ +  + aq l + l ++ + e++++ G SlG   a++++ +ap+ +++l+l
  MMETSP1137-20121227|9447_1 543 RKALVFIHGIGVGPAPYLHFvQRAAREGAAVIVVEL---GAVAQRISAAPPSAPRFAQLLRQALRRH-GLESAVVAGHSLGSAYAVYAHRHAPSLVSSLVL 639
                 5789*****966666665550555568899999999...5555555568899999999855555555.******************************998 PP

  == domain 2    score: -0.8 bits;  conditional E-value: 0.13
   TIGR03695  18 wqalieeleekfsvlalDLpgHGkskslkekeakdfeeaaqellkellek 67 
                 w++  ++  + ++vlal+ +gHG+  +  e++++++++a++el ++l+  
  MMETSP1137-20121227|9447_1 725 WDRPEAKA-RGVRVLALEGVGHGAWLAN-ERAREALAAAIRELRDTLTVT 772
                 55555555.88999999999***98877.668888888888888877765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (876 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        86  (0.0209654); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.55u 0.16s 00:00:00.71 Elapsed: 00:00:00.57
# Mc/sec: 1993.49
//
Query:       MMETSP1137-20121227|9448_1  [L=397]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        1.6    4.0   9.9          2    3.7   6.9    1.1  1  TIGR00927 2A1904: K+-dependent Na+/Ca+ exchanger


Domain annotation for each model (and alignments):
>> TIGR00927  2A1904: K+-dependent Na+/Ca+ exchanger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   6.9    0.0005         2     789     846 ..     104     160 ..      73     194 .. 0.51

  Alignments for each domain:
  == domain 1    score: 3.7 bits;  conditional E-value: 0.0005
   TIGR00927 789 kaeeeseGeieaerkgedegegeieakeaevkGeeeeeeveaeeeteaeGdedegeie 846
                  a++  eGe  + ++g+de  gei a+ ++ + +++++e e++ee  ++  +d+ge++
  MMETSP1137-20121227|9448_1 104 AAQSAAEGESAGGGEGDDEALGEIFAEGNDDEADDQDGEEEDGEEFGDDA-DDDGEAD 160
                 33333334444444444444444444333333333333322222222222.2222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (397 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        81  (0.0197465); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.30u 0.19s 00:00:00.49 Elapsed: 00:00:00.43
# Mc/sec: 1218.60
//
Query:       MMETSP1137-20121227|9449_1  [L=138]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (138 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       170  (0.0414432); expected 82.0 (0.02)
Passed bias filter:                      116  (0.0282789); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.12s 00:00:00.29 Elapsed: 00:00:00.30
# Mc/sec: 607.15
//
Query:       MMETSP1137-20121227|9450_1  [L=235]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (235 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       103  (0.0251097); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.13s 00:00:00.33 Elapsed: 00:00:00.33
# Mc/sec: 939.92
//
Query:       MMETSP1137-20121227|9451_1  [L=423]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.8e-56  188.2  30.8    8.2e-56  187.4  21.3    1.3  1  TIGR00879 SP: MFS transporter, sugar porter (SP) family
    3.2e-17   60.3  20.1    4.5e-17   59.8  13.9    1.1  1  TIGR00898 2A0119: cation transport protein


Domain annotation for each model (and alignments):
>> TIGR00879  SP: MFS transporter, sugar porter (SP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  187.4  21.3     4e-59   8.2e-56      98     509 ..      22     415 ..       7     416 .. 0.90

  Alignments for each domain:
  == domain 1    score: 187.4 bits;  conditional E-value: 4e-59
   TIGR00879  98 ssqwglvvsillvGgligalfagylsdrfgrkkslliiallfvigailsllaatalsvevlivgRvllGigvGiasalvPlYisEiApkalRgalvslyqlaitfGilvaaifg..sgklvanntlgwriplglqlipalllllglfflPesprwLvekgkeeeArkslarlrgeksedkelleelelikikreiekesvnks.gaelfslkkriirrlllgvvlqafqQltGiNaimyYsptifenlGvstdtallvsiivgavnvaaTfvaiflvdrfGRrtllliGaagmaiclfvlgilgvssvtg..sskaasivaivfillfiaayalgigpvvwvlvsEifplsvRpkgiaiavaanwlanfiiallfpimlensigqgvvFiffgalnvlalilvyfflpetkgltlee 509
                  ++w+++ s +++Gglig+     +   +grk++ll+++++++++++l+ ++ t +   +l++gRv +G    +      +   EiAp  +Rg +++++q+ i++Gi +a +++  s  ++ ++ + wr+ +     ++l++l+ l f+Pesp++L++ +    A   l++l+ e s+++ + +     + +++  ++++    + +l++ + +++ ++  g+v+ +  Q++Gi ai+yYs+ +f+ +Gvs+    l++ ++++vn+++Tf+a+ + +++GRr l ++   gm+ ++f +  + + ++        +s++ +v ++l i+ +a+g+g v  +++sEi p   ++  ++i    nw+an++++++fpi+++ ++g   ++++f +l++++  +++  lpetkg+t+ +
  MMETSP1137-20121227|9451_1  22 IAKWAFINSCFSIGGLIGSYGCVIPLAILGRKNTLLVTNAFVFLSSALM-YFGTNWL--MLVAGRVCIG----V------VXXTEIAPIGIRGSVGVCSQVGIVIGIAFANFLTapSFHTF-GTPERWRYVFLFPSFFSLFQLCVLPFCPESPSFLIKSKGSHLALDTLKKLHREASAAAHMNNL----RQQMQEGGNKGDDMsVMDLLMAT-SLRKQVAVGIVIKIGVQFSGIDAIFYYSTLMFRHAGVSD--PQLATTLLSLVNLTMTFIAMAIMEKAGRRLLIMVTWCGMCSGFFAIFLASCLGEEFniVPLFMSNIQVVAMVLIIISFAVGVGNVEGFIISEIMPVYAKDTLMSIGQPLNWIANLTVSTFFPIIFQ-ALGRN-AYLIFVGLTFFFGWFTFTRLPETKGKTIAQ 415
                 679**********************************************.9999999..******9655....4......4467******************************9755555.79*********************************9999999**************9999994....44454444444444477777765.48************************************9..89****************************999988888877765543333333324377889***************************************************************.79999.9**************************876 PP

>> TIGR00898  2A0119: cation transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.8  13.9   2.2e-20   4.5e-17     129     503 ..      26     413 ..      21     416 .. 0.79

  Alignments for each domain:
  == domain 1    score: 59.8 bits;  conditional E-value: 2.2e-20
   TIGR00898 129 kltqsvvfvGvLlGslvlGqlsDrfGRkkvLllstlvtavsgvltafspnytvflvlrlLvGvgiagivvvalvLitEflpkkaRaivgilievffalGllllallAYlird.......WRwLlllvslPlvlflvlvwfvpESpRwlisqgrieeAlkiLkrvAkingkklpaevlslslekelsekkakkaslldllrtpklrkttlllmllwfttafs......YygLvldleelggniYldllisglvelpaklitlllidrLgRrktmaasllla..gvallllllvpeelk.........llrtalavvgkagissaFqmaylytaELYPTvvRnlgvgvcstmarvGsi.isPflvyvlgevslflplvifgvlallagllsllLPetkgvaL 503
                 + ++s++ +G L+Gs  +      +GRk+ Ll++     +s+ l+ f  n+ +++  r+  Gv+            tE+ p+  R  vg+ ++v   +G+ +  +l     +       WR   l  s  ++  l +  f pESp +li ++  + Al++Lk+  +  +++  ++ l+ ++++    +k    s++dll+  +lrk+  + +++ +++ fs      Yy+  +  ++   +  l   + +lv+l   +i++ ++++ gRr  +++    +  g + ++l+ +  e           + ++a++++  +++ ++ +++  + +E+ P     + +++++ +  +  + +s f+ ++ +++ +  +l+  g++      +   LPetkg+++
  MMETSP1137-20121227|9451_1  26 AFINSCFSIGGLIGSYGCVIPLAILGRKNTLLVTNAFVFLSSALMYFGTNWLMLVAGRVCIGVVXX----------TEIAPIGIRGSVGVCSQVGIVIGIAFANFLTAPSFHtfgtperWRYVFLFPSFFSLFQLCVLPFCPESPSFLIKSKGSHLALDTLKKLHREASAAAHMNNLRQQMQE--GGNKGDDMSVMDLLMATSLRKQVAVGIVIKIGVQFSgidaifYYSTLMFRHAGVSDPQLATTLLSLVNLTMTFIAMAIMEKAGRRLLIMVTWCGMcsGFFAIFLASCLGEEFnivplfmsnIQVVAMVLIIISFAVGVGNVEGFIISEIMPVYAKDTLMSIGQPLNWIANLtVSTFFPIIFQALGRNAYLIFVGLTFFFGWFTFTRLPETKGKTI 413
                 6789***********988777778****************************99877776666655..........5********9999999999999988777664333223445569*****99998777777777788******************************999999998666..4555679*****************999999988664444444**9999998888899999**************************999876555114444445556666557888665543334444444455556667888999***************999988876536666666666777766666666655555555567*****9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (423 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       265  (0.0646026); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.13s 00:00:00.51 Elapsed: 00:00:00.50
# Mc/sec: 1116.63
//
Query:       MMETSP1137-20121227|9452_1  [L=57]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        35  (0.00853242); expected 82.0 (0.02)
Passed bias filter:                       33  (0.00804486); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:00.25
# Mc/sec: 300.94
//
Query:       MMETSP1137-20121227|9453_1  [L=285]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (285 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        92  (0.0224281); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.15s 00:00:00.39 Elapsed: 00:00:00.34
# Mc/sec: 1106.38
//
Query:       MMETSP1137-20121227|9455_1  [L=991]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (991 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       220  (0.0536324); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.60u 0.15s 00:00:00.75 Elapsed: 00:00:00.56
# Mc/sec: 2294.76
//
Query:       MMETSP1137-20121227|9456_1  [L=269]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (269 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        39  (0.00950756); expected 82.0 (0.02)
Passed bias filter:                       38  (0.00926377); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.15s 00:00:00.37 Elapsed: 00:00:00.32
# Mc/sec: 1109.53
//
Query:       MMETSP1137-20121227|9458_1  [L=111]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.022   12.2   0.4      0.028   11.9   0.3    1.1  1  TIGR03789 pdsO: proteobacterial sortase system OmpA family protein
      0.032    9.7   0.6      0.037    9.5   0.4    1.0  1  TIGR02169 SMC_prok_A: chromosome segregation protein SMC
      0.043    9.5   3.1       0.05    9.3   2.1    1.0  1  TIGR00618 sbcc: exonuclease SbcC


Domain annotation for each model (and alignments):
>> TIGR03789  pdsO: proteobacterial sortase system OmpA family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.3     2e-05     0.028      94     170 ..       9      87 ..       6      92 .. 0.90

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 2e-05
   TIGR03789  94 eqqlvaltekqqaleqleaeyqqaqkeletlqqeqeqlleelalemnv..qFrTGSseiephfqeQldevaellkqspe 170
                  +  ++l+ ++q ++q++a+ ++++k + tl++  +q  +el+l+  +      G    ++h ++Q d++  llk+s +
  MMETSP1137-20121227|9458_1   9 PSTAAVLQRQDQVMQQQDASLDELHKSVRTLKKMGGQIHDELNLQSGLldDLERGVDLTNSHLRSQRDRMKLLLKKSKD 87 
                 56678899999******************************9998877557999****************999999977 PP

>> TIGR02169  SMC_prok_A: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   0.4   2.7e-05     0.037     698     767 ..      15      84 ..       8      90 .. 0.88

  Alignments for each domain:
  == domain 1    score: 9.5 bits;  conditional E-value: 2.7e-05
   TIGR02169 698 lrriekrldelssklsdaekkieeiekeleqleeeeeklkerleeleeklseleeeleekkeelkeleae 767
                 l+r+++ +++  ++l++ +k++++++k   q+++e + ++  l++le+ ++ ++ +l  +++++k l ++
  MMETSP1137-20121227|9458_1  15 LQRQDQVMQQQDASLDELHKSVRTLKKMGGQIHDELNLQSGLLDDLERGVDLTNSHLRSQRDRMKLLLKK 84 
                 6889999999999************************************999999999999999877655 PP

>> TIGR00618  sbcc: exonuclease SbcC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   2.1   3.7e-05      0.05     329     397 ..      17      86 ..       8      91 .. 0.86

  Alignments for each domain:
  == domain 1    score: 9.3 bits;  conditional E-value: 3.7e-05
   TIGR00618 329 akraalvkqessleeqrrllqtllsqeeelrdeaekeksireeleqqkeleq.hlkklqqqkealkqklq 397
                  + + +++q +sl+e +++  tl +   ++ de + + + ++ le+   l++ hl+ + + +  l+ k++
  MMETSP1137-20121227|9458_1  17 RQDQVMQQQDASLDELHKSVRTLKKMGGQIHDELNLQSGLLDDLERGVDLTNsHLRSQRDRMKLLLKKSK 86 
                 34567889999************************************99975499999999998888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (111 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       290  (0.0706972); expected 82.0 (0.02)
Passed bias filter:                      210  (0.0511945); expected 82.0 (0.02)
Passed Vit filter:                        21  (0.00511945); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.20u 0.19s 00:00:00.39 Elapsed: 00:00:00.36
# Mc/sec: 406.97
//
Query:       MMETSP1137-20121227|9459_1  [L=240]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (240 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        72  (0.0175524); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.11s 00:00:00.32 Elapsed: 00:00:00.33
# Mc/sec: 959.92
//
Query:       MMETSP1137-20121227|9460_1  [L=481]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (481 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        74  (0.01804); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.14s 00:00:00.45 Elapsed: 00:00:00.45
# Mc/sec: 1410.82
//
Query:       MMETSP1137-20121227|9461_1  [L=259]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (259 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       404  (0.0984885); expected 82.0 (0.02)
Passed bias filter:                      149  (0.0363237); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.18s 00:00:00.45 Elapsed: 00:00:00.42
# Mc/sec: 813.93
//
Query:       MMETSP1137-20121227|9462_1  [L=153]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (153 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        59  (0.0143832); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.15s 00:00:00.31 Elapsed: 00:00:00.28
# Mc/sec: 721.23
//
Query:       MMETSP1137-20121227|9463_1  [L=728]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.3e-43  147.1   0.0    2.3e-38  129.8   0.0    2.2  2  TIGR02928 TIGR02928: orc1/cdc6 family replication initiation protein
     0.0089   12.4   0.9      0.019   11.4   0.3    1.5  1  TIGR01447 recD: exodeoxyribonuclease V, alpha subunit
  ------ inclusion threshold ------
      0.012   12.5   0.0       0.18    8.7   0.0    2.2  2  TIGR00362 DnaA: chromosomal replication initiator protein DnaA


Domain annotation for each model (and alignments):
>> TIGR02928  TIGR02928: orc1/cdc6 family replication initiation protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  129.8   0.0   1.7e-41   2.3e-38       7     265 ..     323     574 ..     319     597 .. 0.86
   2 !   15.2   0.0   1.2e-06    0.0016     261     325 ..     602     667 ..     592     687 .. 0.90

  Alignments for each domain:
  == domain 1    score: 129.8 bits;  conditional E-value: 1.7e-41
   TIGR02928   7 lLeedyvpdrivhRdeqieelakalkpilr.gsrpsnvliyGktGtGKtavtkkvlkeleeaaeekdvrvstvyvnCqelsteyqvlvelvnqlaeseeevpetGls.tkevfeelvkele.eredsliivLDEiDklvkkeadelLyeLsraeengdlekakvsvigisndlkfleeldervksslseeeivFppYdaeeLrdILeeRaekafkdgvlddeviplvaalaaqehGdaRkAidlLreageiAeeegsekvte 265
                  L+++  p+r++ R+ + ee+++al++++  g +  ++ ++G +GtGKta++++ l+ l+++ +   + +++ +vnC +++  +qv + l + l + ++ +p++     ++ f +   + + ++ d++++ LDE+D+lv    ++++y++        + ++ + vigisn +++ e l +rv+s++    i F pY+  ++++I+++R +     ++ d + i+l+a  +a  +Gd R+A+++ r a+++Ae+e+ e  t 
  MMETSP1137-20121227|9463_1 323 CLTPHAAPERMPCREAEREEVTAALRSAIAdGGSGTSLYLSGTPGTGKTATVHHALRVLAADESL--RPFKVLEVNCMKMTAPQQVYSLLWEAL-SGQYAPPARASQlLDRRFTKGDGVRKkHSRDTMVLLLDELDYLV-TRTQSVIYNIFEW---ATCAHSGIVVIGISNTMDLPERLLPRVQSRFGIMRINFLPYEHADIAAIISDRLQ---GLDAFDPNSIELAARKVASISGDVRRALEVCRLAAQVAEREELEAATS 574
                 69999*********************998769999**********************99887775..58*************************.667777776432123444444333333778999**********8.667788*****99...4444478************************************************...679**************************************9887665 PP

  == domain 2    score: 15.2 bits;  conditional E-value: 1.2e-06
   TIGR02928 261 ekvteehvekAqekiekerllelirglpthsklvLlaiaalakk.eedevrtgevyevYkevaeel 325
                 ++v  +h+++A++++  + l +++ +lp+h+ l+L  +++l+k  ++  ++ +e+ e+ +++++ +
  MMETSP1137-20121227|9463_1 602 RHVSMSHIDEANRQLRGSVLGRSVAQLPEHQLLLLACALSLQKVrGRVDLEQHEIAERHTNLCRLY 667
                 57999*************************************9989999**************855 PP

>> TIGR01447  recD: exodeoxyribonuclease V, alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.4   0.3   1.4e-05     0.019     162     190 ..     356     384 ..     279     397 .. 0.82

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 1.4e-05
   TIGR01447 162 ksnfslitGGPGTGKTttvarlllalikq 190
                 ++  + ++G PGTGKT tv + l+ l++ 
  MMETSP1137-20121227|9463_1 356 SGTSLYLSGTPGTGKTATVHHALRVLAAD 384
                 5555679*************999998765 PP

>> TIGR00362  DnaA: chromosomal replication initiator protein DnaA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.0     0.026        35     124     152 ..     344     372 ..     279     385 .. 0.86
   2 ?    8.7   0.0   0.00013      0.18     195     382 ..     440     626 ..     437     634 .. 0.72

  Alignments for each domain:
  == domain 1    score: 1.1 bits;  conditional E-value: 0.026
   TIGR00362 124 aaakavaenpgkaynPlfiyGgvGlGKTH 152
                 +aa + a ++g +   l++ G  G GKT 
  MMETSP1137-20121227|9463_1 344 TAALRSAIADGGSGTSLYLSGTPGTGKTA 372
                 4444444445667789************5 PP

  == domain 2    score: 8.7 bits;  conditional E-value: 0.00013
   TIGR00362 195 kekyrsvDlLLiDDiqflagkektqeeffhtfnalleknkqivltsDrapkeleg.leeRLkSRfewGLvvdieppdletrlaILkkkaeeeklelpeevlefiakkirsnvReLeGalnrvlayasltg.keitlelakealkdllkkeekeitieeIqevVaeyykikvsdlkskkRk.keivrpRqia 382
                 k++ r+  +LL+D +  l  +  tq  ++++f+  + ++  iv+       +l++ l  R++SRf+  + ++  p +  +  aI++ +++  +   p+  +e+ a+k+ s   +   al      a++ + +e++ ++ ++  ++  +++++++t +  + + a   ++++s +   +R+ +  v+ R +a
  MMETSP1137-20121227|9463_1 440 KKHSRDTMVLLLDELDYLVTR--TQSVIYNIFEWATCAHSGIVVIGISNTMDLPErLLPRVQSRFGI-MRINFLPYEHADIAAIISDRLQGLDAFDPN-SIELAARKVASISGDVRRALEVCRLAAQVAErEELEAATSANENTNASTNQNTNTTAHGTKGAMAAPRHVSMSHIDEANRQlRGSVLGRSVA 626
                 566788889*********977..***********9999999999999999999877*********87.78889999999999****999987765553.34555555554444444455444444443332444444444444444466667788888888888888888888877666535566666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (728 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       208  (0.050707); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.53u 0.19s 00:00:00.72 Elapsed: 00:00:00.50
# Mc/sec: 1921.76
//
Query:       MMETSP1137-20121227|9464_1  [L=393]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.7e-12   41.5   0.0    1.2e-11   41.1   0.0    1.0  1  TIGR03903 TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
    4.5e-10   37.2   0.1    6.8e-10   36.6   0.1    1.2  1  TIGR03724 arch_bud32: Kae1-associated kinase Bud32
    3.4e-05   20.4   0.8     0.0055   13.1   0.1    2.7  3  TIGR01982 UbiB: 2-polyprenylphenol 6-hydroxylase


Domain annotation for each model (and alignments):
>> TIGR03903  TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.1   0.0   8.5e-15   1.2e-11       4     131 ..     112     230 ..     109     244 .. 0.84

  Alignments for each domain:
  == domain 1    score: 41.1 bits;  conditional E-value: 8.5e-15
   TIGR03903   4 hkvaikllRedaaeeerlvaRFrReialCarLsh.PnivaLlDsGeaedgll.FavFeyveGrtlrevLaadGaLpaaetgrLmlqvLDalaaahdaGvvhRDLkPqnimvsaadveshakvLDFGigaL 131
                  kv+ik+l+        + ++ +Rei++  +L    ni++LlD  + ++      +Feyv+    r++     +L+  +    +   L al + h++G++hRD+kP+n+m+    ++++ +++D+G++  
  MMETSP1137-20121227|9464_1 112 SKVIIKILKPV------KKKKIKREIKILMNLAGgTNIIQLLDIVRDPQSKTpSLIFEYVNNTDFRALYP---TLTDYDVRYYIYELLKALEHCHSNGIMHRDVKPHNVMIDH--EKRQLRLIDWGLAEF 230
                 67888888777......678899********985379******9888776551569******99998876...699**********************************976..567889999999765 PP

>> TIGR03724  arch_bud32: Kae1-associated kinase Bud32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.6   0.1     5e-13   6.8e-10      39     141 ..     122     233 ..     115     245 .. 0.79

  Alignments for each domain:
  == domain 1    score: 36.6 bits;  conditional E-value: 5e-13
   TIGR03724  39 lrkeRtrkEarllseakkagvnt....Pvvydvdpeekkivmeyiegkklkdlleekel....ellkevGelvgklHkagivhgDlttsNiiv..kddklyliDfGLgkkske 141
                 ++k++ ++E+++l++++  g n      +v+d + ++ ++++ey+++++++ l  + ++     +++e+ +++ ++H++gi+h D+ ++N+++  ++++l liD GL+++ + 
  MMETSP1137-20121227|9464_1 122 VKKKKIKREIKILMNLAG-GTNIiqllDIVRDPQSKTPSLIFEYVNNTDFRALYPTLTDydvrYYIYELLKALEHCHSNGIMHRDVKPHNVMIdhEKRQLRLIDWGLAEFYHP 233
                 567788888888888764.44550111345555667789*************99997778888999***************************54488999*******98665 PP

>> TIGR01982  UbiB: 2-polyprenylphenol 6-hydroxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.1   0.1     4e-06    0.0055     136     167 ..     107     138 ..     100     149 .. 0.89
   2 !    4.2   0.0     0.002       2.8     269     303 ..     193     228 ..     185     241 .. 0.84
   3 ?   -1.0   0.0     0.079   1.1e+02     367     391 ..     292     318 ..     287     322 .. 0.84

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 4e-06
   TIGR01982 136 vlvegkeVavKvlRPgiekkieadikllella 167
                 ++++g++V++K+l+P  +kki+++ik+l++la
  MMETSP1137-20121227|9464_1 107 RMTDGSKVIIKILKPVKKKKIKREIKILMNLA 138
                 57899*************************99 PP

  == domain 2    score: 4.2 bits;  conditional E-value: 0.002
   TIGR01982 269 lkqvlrdgfFHaDlHpGNilvakd.gkiialDfGiv 303
                 l++   +g+ H D+ p N++++++  ++ ++D G+ 
  MMETSP1137-20121227|9464_1 193 LEHCHSNGIMHRDVKPHNVMIDHEkRQLRLIDWGLA 228
                 5677889**************988467899***985 PP

  == domain 3    score: -1.0 bits;  conditional E-value: 0.079
   TIGR01982 367 isigklL..aklfkitekfelevqpeL 391
                 ++i+k+L  ++lf+   k++le+ p++
  MMETSP1137-20121227|9464_1 292 VKIAKVLgtDELFDYLDKYNLELDPHF 318
                 68889984458*************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (393 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       113  (0.0275475); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.35u 0.17s 00:00:00.52 Elapsed: 00:00:00.42
# Mc/sec: 1235.04
//
Query:       MMETSP1137-20121227|9465_1  [L=558]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (558 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        88  (0.0214529); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.17s 00:00:00.55 Elapsed: 00:00:00.44
# Mc/sec: 1673.86
//
Query:       MMETSP1137-20121227|9466_1  [L=179]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (179 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        76  (0.0185275); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.15s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 843.79
//
Query:       MMETSP1137-20121227|9467_1  [L=627]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (627 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       109  (0.0265724); expected 82.0 (0.02)
Passed bias filter:                       98  (0.0238908); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.16s 00:00:00.56 Elapsed: 00:00:00.48
# Mc/sec: 1724.11
//
Query:       MMETSP1137-20121227|9468_1  [L=314]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.2e-44  147.9   0.3    9.7e-44  147.6   0.2    1.1  1  TIGR02280 PaaB1: phenylacetate degradation probable enoyl-CoA hydratase PaaB
    8.3e-38  128.2   0.0    9.6e-38  128.0   0.0    1.1  1  TIGR01929 menB: naphthoate synthase
    2.5e-33  113.3   0.0    3.1e-33  113.0   0.0    1.1  1  TIGR03210 badI: 2-ketocyclohexanecarboxyl-CoA hydrolase
    5.9e-30  102.1   0.4    7.6e-30  101.7   0.3    1.0  1  TIGR02437 FadB: fatty oxidation complex, alpha subunit FadB
      6e-30  102.0   0.3    7.1e-30  101.7   0.2    1.0  1  TIGR02440 FadJ: fatty oxidation complex, alpha subunit FadJ
    3.8e-29   99.1   0.2    4.5e-29   98.9   0.1    1.0  1  TIGR02441 fa_ox_alpha_mit: fatty acid oxidation complex, alpha subunit, mitochondrial
    3.1e-22   77.0   0.1    4.2e-22   76.6   0.1    1.2  1  TIGR03200 dearomat_oah: 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase
    4.1e-17   60.1   0.3    5.6e-17   59.7   0.2    1.1  1  TIGR03189 dienoyl_CoA_hyt: cyclohexa-1,5-dienecarbonyl-CoA hydratase
    1.2e-10   38.5   0.2      2e-10   37.9   0.1    1.3  1  TIGR03222 benzo_boxC: benzoyl-CoA-dihydrodiol lyase
     0.0018   15.8   0.0     0.0027   15.2   0.0    1.2  1  TIGR00706 SppA_dom: signal peptide peptidase SppA, 36K type


Domain annotation for each model (and alignments):
>> TIGR02280  PaaB1: phenylacetate degradation probable enoyl-CoA hydratase PaaB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  147.6   0.2   2.4e-46   9.7e-44       4     254 ..      65     312 ..      60     314 .] 0.94

  Alignments for each domain:
  == domain 1    score: 147.6 bits;  conditional E-value: 2.4e-46
   TIGR02280   4 elekgvlrltlnrpdklnsfteemhaelaealerverdd.vrallltGaG.rGfcaGqdlsernvtkgaapdlGetvekfynplvrrlaalpkpvvvavnGvaaGaGanlalagdivlaaesakfiqafaklGlipdsGGtwllprlvGrarakglallgekldaetaaewGliwqvvddealadevqalaahlakqptrglalikralqaaetnsldtqldlerdlqrelGrsadyaeGvaafldkrepefk 254
                  ++kgv  +tlnrp+ ln+++  + +e+ ++ +  + d+ +r+++ltG+G + f+aG d++      g+ + + +  ++ ++ l  +l  ++kp+++avnG a G G +la+a+d +laa++akf q  +klG ip  GGt  + r +G+ara+ l l+g+ + ae+a + Gl  ++v  ++l+de+   a+++a+     +++ k  ++ a   sl + l +er l      ++d + G++af+ k +p f+
  MMETSP1137-20121227|9468_1  65 RVDKGVGIITLNRPKALNALSPPLVTEVLQCAQGFDADErIRCIILTGSGdKAFAAGADIKTM----GDNSYMDMYKKRLFSDL-DQLSLVKKPIIAAVNGFALGGGCELAMACDFILAADTAKFGQPEIKLGTIPGLGGTQRFTRALGKARAMELVLTGDMIGAEEAVARGLASRMVPAANLMDEAVLTASKIASFSEPIVSMAKTCVNVAFESSLAEGLRFERALFYSSFGTQDQKIGMKAFVGKEQPTFT 312
                 4689********************************9998*********9679******9754....44455556678999886.68999**********************************************************************************************************99999****************************9999******************98 PP

>> TIGR01929  menB: naphthoate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  128.0   0.0   2.3e-40   9.6e-38      10     257 ..      67     312 ..      57     314 .] 0.88

  Alignments for each domain:
  == domain 1    score: 128.0 bits;  conditional E-value: 2.3e-40
   TIGR01929  10 edaiakiaidrpkvrnafrpktvdellealddaredsdiGvviltGaGdkafcsGGdqkvrgksGykdesGesrlnvlevqrlirtlpkpvialvnGyaiGGGhvlhvvcdltiasenarfgqtgpkvGsfdgGyGsaylarivGqkkareifflcrqydaeeaekmGlvnavvelaeleketvewareilaksplalrllkaalnadldGqaGlq.elaGeatllfylteeaqeGrdaflekrepdfs 257
                 ++++  i+++rpk +na+ p  v e+l++ +    d+ i  +iltG+Gdkaf +G d k  g++ y+d   +  +  l+   ++  + kp+ia vnG+a+GGG  l + cd+ +a++ a+fgq + k+G+  g  G+  ++r +G+ +a e+ +++    aeea + Gl   +v++a+l +e+v  a +i + s   + + k+++n+  +        +        + t++ + G +af+ k +p f 
  MMETSP1137-20121227|9468_1  67 DKGVGIITLNRPKALNALSPPLVTEVLQCAQGFDADERIRCIILTGSGDKAFAAGADIKTMGDNSYMDMYKKRLFSDLD---QLSLVKKPIIAAVNGFALGGGCELAMACDFILAADTAKFGQPEIKLGTIPGLGGTQRFTRALGKARAMELVLTGDMIGAEEAVARGLASRMVPAANLMDEAVLTASKIASFSEPIVSMAKTCVNVAFESSLAEGlRFERALFYSSFGTQDQKIGMKAFVGKEQPTFT 312
                 6688899************************************************************988776665555...466788*********************************************99************************************************************99*********9988654433033333333334577788899********9996 PP

>> TIGR03210  badI: 2-ketocyclohexanecarboxyl-CoA hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  113.0   0.0   7.5e-36   3.1e-33       1     254 [.      57     312 ..      57     314 .] 0.86

  Alignments for each domain:
  == domain 1    score: 113.0 bits;  conditional E-value: 7.5e-36
   TIGR03210   1 yedilyevr..ngvatiiinraeklnafrgrtcdelikalkkagydreigvivlagagdkafctggdqsth.dgnydgrgviglpveelhsairdvakpviarvqgyaigggnvlvticdltiasekavlgqvgpkvgsvdpgygtallarvvgekkareiwylcrrysakealamglvnavvphdqldaevkkwcdeiveksptalaiakrsfnvdtahqagia.glgmyalkly...ydteesregvkalqekrkpefr 254
                 +e il evr  +gv +i++nr++ lna+    + e++++ +  + d  i +i+l+g+gdkaf++g d  t  d +y       l + +l+  +  v kp+ia v+g+a+ggg  l+  cd+ +a++ a +gq   k+g++    gt  ++r +g+ +a e+        a+ea+a gl+  +vp  +l  e    + +i   s   +++ak   nv  +    +a gl +    l+   + t++ + g+ka+  k +p f 
  MMETSP1137-20121227|9468_1  57 FEHILSEVRvdKGVGIITLNRPKALNALSPPLVTEVLQCAQGFDADERIRCIILTGSGDKAFAAGADIKTMgDNSYMDMYKKRL-FSDLD-QLSLVKKPIIAAVNGFALGGGCELAMACDFILAADTAKFGQPEIKLGTIPGLGGTQRFTRALGKARAMELVLTGDMIGAEEAVARGLASRMVPAANLMDEAVLTASKIASFSEPIVSMAKTCVNVAFES--SLAeGLRFE-RALFyssFGTQDQKIGMKAFVGKEQPTFT 312
                 567777654338*******************************************************88762555655544444.34443.46779*******************************************965567999*****************************************************************9997654..444155544.444402356999**************996 PP

>> TIGR02437  FadB: fatty oxidation complex, alpha subunit FadB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  101.7   0.3   1.9e-32   7.6e-30      12     198 ..      65     247 ..      58     261 .. 0.87

  Alignments for each domain:
  == domain 1    score: 101.7 bits;  conditional E-value: 1.9e-32
   TIGR02437  12 lledgiaelvfdapgsvnkldratlasldkaldalkaqsdlkglllt.sdkdafivGaditeflelfakpeeellqwleeansvfnkledlpvptvaavkGfalGGGlevvlatdfriadktakiGlpetklGilpGfGGtvrlprliGadsaleiiaaGkevraedalkvglvdavvkaekleaaal 198
                  +++g+  ++++ p ++n l    ++++ +  + ++a+  +++++lt s+ +af  Gadi  +      +++ ++ + +   s +++l  ++ p +aav+GfalGGG+e+ +a+df +a++tak G pe+klG +pG+GGt r+ r +G   a+e++ +G+  +ae+a+  gl   +v a +l+  a+
  MMETSP1137-20121227|9468_1  65 RVDKGVGIITLNRPKALNALSPPLVTEVLQCAQGFDADERIRCIILTgSGDKAFAAGADIKTMG-----DNSYMDMYKKRLFSDLDQLSLVKKPIIAAVNGFALGGGCELAMACDFILAADTAKFGQPEIKLGTIPGLGGTQRFTRALGKARAMELVLTGDMIGAEEAVARGLASRMVPAANLMDEAV 247
                 578899999***********************************99857899********8754.....444445555444444444555566***********************************************************************************999999988776 PP

>> TIGR02440  FadJ: fatty oxidation complex, alpha subunit FadJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  101.7   0.2   1.7e-32   7.1e-30       8     206 ..      67     259 ..      60     297 .. 0.83

  Alignments for each domain:
  == domain 1    score: 101.7 bits;  conditional E-value: 1.7e-32
   TIGR02440   8 edniailtidvpgeklntlkaefadqvaeilkqlkekkelrglvlvsgkpdsfiagadismlaacktadeakalaqkgqellaelealpikvvaaihgaclggglelalachsrvcsdddktvlglpevqlgllpgsggtqrlprlvgvskaldmiltgkqlrakqalklglvddvvpksilldvavelakkgklkrka 206
                 +++++i+t++ p   ln+l   ++ +v +  +   +++ +r ++l  + + +f agadi+ ++     d   +  ++  + l +l+ ++ +++aa+ g  lggg ela+ac   + +d     +g pe++lg +pg ggtqr+ r +g ++a++++ltg  + a +a+  gl   +vp + l+d av +a k    + +
  MMETSP1137-20121227|9468_1  67 DKGVGIITLNRPK-ALNALSPPLVTEVLQCAQGFDADERIRCIILTGSGDKAFAAGADIKTMGDNSYMD---MYKKRLFSDLDQLSLVKKPIIAAVNGFALGGGCELAMACDFILAADTA--KFGQPEIKLGTIPGLGGTQRFTRALGKARAMELVLTGDMIGAEEAVARGLASRMVPAANLMDEAVLTASKIASFSEP 259
                 6799*****9985.79******************************9999*********8766544333...2333444445666666779********************988877665..58***************************************************************999887666555 PP

>> TIGR02441  fa_ox_alpha_mit: fatty acid oxidation complex, alpha subunit, mitochondrial
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.9   0.1   1.1e-31   4.5e-29       1     197 [.      48     238 ..      48     280 .. 0.89

  Alignments for each domain:
  == domain 1    score: 98.9 bits;  conditional E-value: 1.1e-31
   TIGR02441   1 rllstsaallarthlsvevkgdvavvkidspnskvntlskelsaefkevldeletneavksavlisskpgsfvaGadidmlkacktaeevtqlsreaqklleklekskkpivaaisGsclGGGlelalachyriatkdkktllglpevllGllpGaGgtqrlpklvsvpaaldleltGkkikadrakklGlvdrlvd 197
                 r +st+a++ ++   +v v  +v ++ ++ p +  n+ls  l +e+ +  + + ++e ++ ++l  s   +f aGadi+ +        +++  +     l++l   kkpi+aa++G  lGGG ela+ac++ +a++    ++g pe+ lG +pG Ggtqr+ +  +   a++l+ltG  i a+ a   Gl  r+v 
  MMETSP1137-20121227|9468_1  48 RGMSTAAPAFEHILSEVRVDKGVGIITLNRPKA-LNALSPPLVTEVLQCAQGFDADERIRCIILTGSGDKAFAAGADIKTMGDN---SYMDMYKKRLFSDLDQLSLVKKPIIAAVNGFALGGGCELAMACDFILAADTA--KFGQPEIKLGTIPGLGGTQRFTRALGKARAMELVLTGDMIGAEEAVARGLASRMVP 238
                 5688888888888889999999*********97.7******************************************9877554...44556667777889999999*************************9998765..58************************************************999984 PP

>> TIGR03200  dearomat_oah: 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.6   0.1     1e-24   4.2e-22      40     215 ..      72     242 ..      62     285 .. 0.90

  Alignments for each domain:
  == domain 1    score: 76.6 bits;  conditional E-value: 1e-24
   TIGR03200  40 wiildnpkqynsyttdmvkaiilafrrassdrdvaavvftavgdkafctggntkeyaeyyagnpqeyrqymrlfndmvsailgcdkpvicrvngmrigggqeigmaadlsvaqdlakfgqagpkhgsaaiggatdflplmigceqamvsgtlcepfsahkakrlgiivdvvpalkv 215
                  i+l+ pk  n+ +  +v  ++ + +   +d  + ++++t+ gdkaf +g + k   +      + y+   rlf d+ + +   +kp+i+ vng+ +ggg e+ ma+d+ +a d akfgq   k g+ +  g t+ +   +g   am    + +   a  a  +g+  ++vpa   
  MMETSP1137-20121227|9468_1  72 IITLNRPKALNALSPPLVTEVLQCAQGFDADERIRCIILTGSGDKAFAAGADIKTMGDNS--YMDMYK--KRLFSDL-DQLSLVKKPIIAAVNGFALGGGCELAMACDFILAADTAKFGQPEIKLGTIPGLGGTQRFTRALGKARAMELVLTGDMIGAEEAVARGLASRMVPAANL 242
                 589*************************************************99886532..233454..4899997.566668*********************************************9999999999*********************************9765 PP

>> TIGR03189  dienoyl_CoA_hyt: cyclohexa-1,5-dienecarbonyl-CoA hydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.7   0.2   1.4e-19   5.6e-17      15     245 ..      74     308 ..      65     313 .. 0.81

  Alignments for each domain:
  == domain 1    score: 59.7 bits;  conditional E-value: 1.4e-19
   TIGR03189  15 rlarpka.nivdaamiaalraalgealeaaalravlldaegph.fsfgasveehmpdqcaamlk.slhklviemldspvpilvavrgqclggglevaaagnllfaapdaklgqpeiklgvfapaasc.llpervgkvaaedllysgrsidgaegariglvdavaedpeaaalay.fdehlaklsasslrfavraarlgvvervkakiaevealyleelmathdaveglnaflekrp 245
                  l rpka n +   +++ + ++      + ++r+++l   g + f+ ga ++    ++   m k  l + + ++  +  pi+ av g  lggg e+a+a ++++aa  ak+gqpeiklg +        +   +gk+ a +l+ +g  i ++e++  gl++ ++   +    a     ++a +s   + +a  +  +     + + +    al+    + t d   g++af++k  
  MMETSP1137-20121227|9468_1  74 TLNRPKAlNALSPPLVTEVLQCAQGFDADERIRCIILTGSGDKaFAAGADIKTMGDNSYMDMYKkRLFSDLDQLSLVKKPIIAAVNGFALGGGCELAMACDFILAADTAKFGQPEIKLGTIPGLGGTqRFTRALGKARAMELVLTGDMIGAEEAVARGLASRMVPAANLMDEAVlTASKIASFSEPIVSMAKTCVNVAFESSLAEGLRFERALFYSS-FGTQDQKIGMKAFVGKEQ 308
                 6899998788888899888887788888999****999998644999**999888888889986268888888888999****************************************997765541677779**************************998866554333330346777777777777777777777777777777666776655.678899999999999865 PP

>> TIGR03222  benzo_boxC: benzoyl-CoA-dihydrodiol lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.9   0.1   4.8e-13     2e-10      66     226 ..     104     253 ..      90     278 .. 0.74

  Alignments for each domain:
  == domain 1    score: 37.9 bits;  conditional E-value: 4.8e-13
   TIGR03222  66 evrvvvltsakdkvfcaGanikmlglsthahkvnfckftnetrngiedaseesglkflaavnGtaaGGGyelalacdeivlvddrssavslpevpllavlpGtGGltrvtdkrrvrrdladifctieeGvkGkrakewrlvdevvksskfdaavaeraael 226
                  +r+++lt + dk f aGa+ik +g  ++        f++     +++     ++  +aavnG a GGG ela+acd i+ +d   +    pe+  l+ +pG GG  r t  r + + +a  +  + + +  + a+   l   +v+ +++ ++    a ++
  MMETSP1137-20121227|9468_1 104 RIRCIILTGSGDKAFAAGADIKTMGDNSYMDMYKKRLFSD-----LDQ-LSLVKKPIIAAVNGFALGGGCELAMACDFILAADT--AKFGQPEIK-LGTIPGLGGTQRFT--RALGKARAMELVLTGDMIGAEEAVARGLASRMVPAANLMDEAVLTASKI 253
                 589**********************998765443333433.....333.33456779*********************999885..56889**97.5889*****99887..5555555555555556666666666666666666655555444455555 PP

>> TIGR00706  SppA_dom: signal peptide peptidase SppA, 36K type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0   6.5e-06    0.0027      51      96 ..     139     185 ..     134     208 .. 0.91

  Alignments for each domain:
  == domain 1    score: 15.2 bits;  conditional E-value: 6.5e-06
   TIGR00706  51 eiyeklkklk.akkpvvasvgnvaaSGgyyialaadeivanegtlvG 96 
                  +++ l++l+  kkp++a v+++a  Gg  +a+a+d i+a +++  G
  MMETSP1137-20121227|9468_1 139 RLFSDLDQLSlVKKPIIAAVNGFALGGGCELAMACDFILAADTAKFG 185
                 678889999999*****************************999877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (314 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       116  (0.0282789); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                        10  (0.00243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.33u 0.11s 00:00:00.44 Elapsed: 00:00:00.52
# Mc/sec: 797.01
//
Query:       MMETSP1137-20121227|9470_1  [L=133]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-05   23.0   0.1    1.7e-05   22.7   0.0    1.1  1  TIGR00673 cynS: cyanate hydratase


Domain annotation for each model (and alignments):
>> TIGR00673  cynS: cyanate hydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.7   0.0   4.1e-09   1.7e-05       9      60 ..      73     124 ..      64     133 .] 0.84

  Alignments for each domain:
  == domain 1    score: 22.7 bits;  conditional E-value: 4.1e-09
   TIGR00673   9 lakklleakkkkgltfadvedklGkaevyvaavlygqaaadadeakkvaell 60 
                  +++ll ak++ g tf++ +d++G+++ y a +l+gqa+++a  a k+   l
  MMETSP1137-20121227|9470_1  73 RTHRLLAAKAASGKTFDQXADEVGLTNTYTAQLLLGQAKLSAATAPKLKLSL 124
                 5789*************************************99998876554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (133 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        46  (0.011214); expected 82.0 (0.02)
Passed bias filter:                       38  (0.00926377); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.16u 0.14s 00:00:00.30 Elapsed: 00:00:00.27
# Mc/sec: 650.17
//
Query:       MMETSP1137-20121227|9471_1  [L=540]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (540 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        95  (0.0231594); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.15s 00:00:00.52 Elapsed: 00:00:00.40
# Mc/sec: 1781.85
//
Query:       MMETSP1137-20121227|9472_1  [L=267]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.6e-16   57.5   0.5    5.9e-16   56.4   0.0    1.9  2  TIGR03677 rpl7ae: 50S ribosomal protein L7Ae


Domain annotation for each model (and alignments):
>> TIGR03677  rpl7ae: 50S ribosomal protein L7Ae
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.4   0.0   1.4e-19   5.9e-16      22     114 ..     131     223 ..     114     227 .. 0.83
   2 ?   -3.3   0.1      0.45   1.8e+03      31      44 ..     250     263 ..     243     266 .. 0.67

  Alignments for each domain:
  == domain 1    score: 56.4 bits;  conditional E-value: 1.4e-19
   TIGR03677  22 retGkikkGtnevtkaverGiaklvviaedvePeeivahlpalceekkipyvyvkkkedlGkaaGlevsaaavaivdeGkaeelleeivekve 114
                 ++   ik G n + k  e+ +a+lvvia+dv+P e+v++lpalc + +ipy  vk+++ lG+ +  + +++ + +    + ++++ ++v++++
  MMETSP1137-20121227|9472_1 131 KKQIYIKFGLNHISKLCEQKKAQLVVIAHDVDPIELVIWLPALCRKMDIPYCIVKSQSRLGQLVHQKTASCLAMVSVRPEDRHEFSQLVTAIR 223
                 4556799*******************************************************9988766555555445566666888887775 PP

  == domain 2    score: -3.3 bits;  conditional E-value: 0.45
   TIGR03677  31 tnevtkaverGiak 44 
                 +  v +a+e+  ak
  MMETSP1137-20121227|9472_1 250 STKVQRAIEKEAAK 263
                 45677788887776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (267 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       296  (0.0721599); expected 82.0 (0.02)
Passed bias filter:                      151  (0.0368113); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.24u 0.15s 00:00:00.39 Elapsed: 00:00:00.39
# Mc/sec: 903.62
//
Query:       MMETSP1137-20121227|9473_1  [L=164]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      1e-07   29.3   0.4    1.8e-07   28.5   0.3    1.5  1  TIGR01411 tatAE: twin arginine-targeting protein translocase, TatA/E family
    1.3e-07   29.9   0.0    1.9e-07   29.3   0.0    1.4  1  TIGR01410 tatB: twin arginine-targeting protein translocase TatB


Domain annotation for each model (and alignments):
>> TIGR01411  tatAE: twin arginine-targeting protein translocase, TatA/E family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.5   0.3   8.9e-11   1.8e-07       1      45 [.      76     120 ..      76     122 .. 0.89

  Alignments for each domain:
  == domain 1    score: 28.5 bits;  conditional E-value: 8.9e-11
   TIGR01411   1 glsatelliilvvilLlFGakKLpelgrdlGkaikeFKkalkeee 45 
                 gl+a+el ii+ v+lL+ G+ ++++l++d+Gk   e K+  +e e
  MMETSP1137-20121227|9473_1  76 GLGAPELAIIAGVALLILGPEQVKKLAKDVGKVSAELKQVPEEFE 120
                 699*****************************8888888666665 PP

>> TIGR01410  tatB: twin arginine-targeting protein translocase TatB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.3   0.0   9.5e-11   1.9e-07       1      65 [.      75     137 ..      75     154 .. 0.81

  Alignments for each domain:
  == domain 1    score: 29.3 bits;  conditional E-value: 9.5e-11
   TIGR01410   1 fdiGfsELlviavValvvlGPerLPkairavgklvralrklasdvkneldeelkleelkeelkev 65 
                 f++G  EL +ia Val++lGPe+  k++++vgk+ ++l+++ +++ + +     ++el+ ++ ++
  MMETSP1137-20121227|9473_1  75 FGLGAPELAIIAGVALLILGPEQVKKLAKDVGKVSAELKQVPEEFEKGMSAG--AAELEAKRGTA 137
                 78999***********************************999999988654..45555544444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (164 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       156  (0.0380302); expected 82.0 (0.02)
Passed bias filter:                      120  (0.029254); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.19u 0.16s 00:00:00.35 Elapsed: 00:00:00.31
# Mc/sec: 698.26
//
Query:       MMETSP1137-20121227|9474_1  [L=149]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.012   13.7   0.0      0.019   13.0   0.0    1.4  1  TIGR02968 succ_dehyd_anc: succinate dehydrogenase, hydrophobic membrane anchor protein


Domain annotation for each model (and alignments):
>> TIGR02968  succ_dehyd_anc: succinate dehydrogenase, hydrophobic membrane anchor protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   4.7e-06     0.019      58      96 ..      81     125 ..      61     130 .. 0.76

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 4.7e-06
   TIGR02968  58 lalllHawiGlrdvleDYv......ksealrlvlqvlvilvlvay 96 
                 +al lHa  Gl  v+ DY           lr++l +++ ++l+++
  MMETSP1137-20121227|9474_1  81 VALPLHAHFGLNSVISDYAhkihklADPPLRVALVAFTGVTLLGM 125
                 67889*************955554445667887777777777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (149 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        89  (0.0216967); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.16u 0.11s 00:00:00.27 Elapsed: 00:00:00.34
# Mc/sec: 578.42
//
Query:       MMETSP1137-20121227|9475_1  [L=126]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (126 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       125  (0.0304729); expected 82.0 (0.02)
Passed bias filter:                      119  (0.0290102); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.16s 00:00:00.32 Elapsed: 00:00:00.33
# Mc/sec: 503.96
//
Query:       MMETSP1137-20121227|9476_1  [L=313]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.8e-52  174.4   0.3    9.4e-52  174.0   0.2    1.2  1  TIGR02057 PAPS_reductase: phosphoadenosine phosphosulfate reductase
      1e-44  150.8   0.2    1.6e-44  150.2   0.2    1.3  1  TIGR00434 cysH: phosophoadenylyl-sulfate reductase
    9.4e-35  118.0   0.3    1.3e-34  117.6   0.2    1.2  1  TIGR02055 APS_reductase: adenylylsulfate reductase, thioredoxin dependent
    7.8e-13   45.6   1.8    3.4e-12   43.5   1.3    1.8  1  TIGR00424 APS_reduc: 5'-adenylylsulfate reductase, thioredoxin-independent
    8.1e-06   23.5   0.2    0.00075   17.0   0.0    2.3  2  TIGR02039 CysD: sulfate adenylyltransferase, small subunit


Domain annotation for each model (and alignments):
>> TIGR02057  PAPS_reductase: phosphoadenosine phosphosulfate reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  174.0   0.2   1.1e-54   9.4e-52      26     224 .]     101     306 ..      74     306 .. 0.89

  Alignments for each domain:
  == domain 1    score: 174.0 bits;  conditional E-value: 1.1e-54
   TIGR02057  26 tlvlssafgiqalvilhllskil..qeipvifiDtlylfpetlelvdelkeklkldlnlkkydaveseaafeakyGklleekdvekydqiakvePlqralkeLnavawltGrrrdqasaranlkvleldekrgvlkvlPlidWtskqvyeylaahkvkynplfDqGylsvGDehstrkvkege.....deragrfkG......klkteCGlh 224
                   + ++a    + vi++++ k+    +i++ifiDt +lf+et  ++ e+++ +  + + ++  ++  +++f  kyG+ ++  d e+yd+  kvePlqra+ke n+ aw+ Grrrd + +ra l+v e   +    k++Pl++Wt+++ ++yl + kv+y+pl+D G+ s+GD +st+kv +++      er grf+G      + kteCG+h
  MMETSP1137-20121227|9476_1 101 RPIFTTALIAGDCVIMDVICKLGlqDKIKIIFIDTFFLFEETTAFMREVEQYYGIKAHWYQCADCADAEEFYDKYGEDYWMTDLEDYDKKCKVEPLQRAMKEANTDAWINGRRRDHGYERATLPVWE--GN----KINPLAHWTFEECWNYLRKYKVPYHPLHDVGFSSLGDVQSTKKVPHEKwftyaGERSGRFEGmkakdgSSKTECGIH 306
                 55789999999**********977799****************************************************************************************************..44....9****************************************98865432222289*****86333333789*****9 PP

>> TIGR00434  cysH: phosophoadenylyl-sulfate reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  150.2   0.2     2e-47   1.6e-44      17     213 ..     103     306 ..      89     307 .. 0.87

  Alignments for each domain:
  == domain 1    score: 150.2 bits;  conditional E-value: 2e-47
   TIGR00434  17 vlatsfGieglvlldlvski..kkdievilldtgylfketyelieevkerykglnikvykpd..lseaeqeakyGdkLWekedlnkydqlrkvePlkralkeleasawlsGlRrdqsssRanlkvveldekfellkvlPlidWtfkdvyqYleahnlpYnelfDqgYlsiGdahstrpvkeg.....ederagRfkGk......akteCGlh 213
                 + +t+  +   v++d++ k+  +++i++i++dt +lf+et  ++ ev++ y+g++ + y+      ++e+  kyG+  W   dl+ yd+  kvePl+ra+ke +  aw+ G+Rrd + +Ra l+v e +      k++Pl +Wtf++ ++Yl++ ++pY++l+D g+ s+Gd++st++v ++       er+gRf+G+       kteCG+h
  MMETSP1137-20121227|9476_1 103 IFTTALIAGDCVIMDVICKLglQDKIKIIFIDTFFLFEETTAFMREVEQ-YYGIKAHWYQCAdcADAEEFYDKYGEDYWMT-DLEDYDKKCKVEPLQRAMKEANTDAWINGRRRDHGYERATLPVWEGN------KINPLAHWTFEECWNYLRKYKVPYHPLHDVGFSSLGDVQSTKKVPHEkwftyAGERSGRFEGMkakdgsSKTECGIH 306
                 566777777899*****9954489***********************76.667******988455678899**********.6****************************************997755......6****************************************9875542222279******98633333369****** PP

>> TIGR02055  APS_reductase: adenylylsulfate reductase, thioredoxin dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  117.6   0.2   1.5e-37   1.3e-34       4     194 .]     110     305 ..     107     305 .. 0.85

  Alignments for each domain:
  == domain 1    score: 117.6 bits;  conditional E-value: 1.5e-37
   TIGR02055   4 iedlvlvdliakv..kkevevlfldtGrlfketlelidqveerYdieikvla.pdekeveeqvkeyGlnlfyrs.elrkeCCelRkvePLkraLeg..vsaWitGlRReqsptRakvallelDearkslvkvnPladwtleevweyikknelpvnpLherGYpsiGCepCtrpv.....kegedeRaGRWwweea....akkeCGL 194
                 + d v++d+i k   + +++++f+dt  lf+et +++++ve+ Y+i+ + ++  d ++ ee  ++yG + +  + e  ++ C   kvePL+ra+++  ++aWi G RR+++  Ra++++ e     +   k+nPla+wt ee w+y++k ++p++pLh+ G+ s+G +  t++v     ++ + eR+GR+++++a    +k+eCG+
  MMETSP1137-20121227|9476_1 110 AGDCVIMDVICKLglQDKIKIIFIDTFFLFEETTAFMREVEQYYGIKAHWYQcADCADAEEFYDKYGEDYWMTDlEDYDKKC---KVEPLQRAMKEanTDAWINGRRRDHGYERATLPVWE-----G--NKINPLAHWTFEECWNYLRKYKVPYHPLHDVGFSSLGDVQSTKKVphekwFTYAGERSGRFEGMKAkdgsSKTECGI 305
                 6799******997336789***************************9998862577899**************985555555...9********8622679*****************987.....3..48****************************************9983322235578********9752222689**95 PP

>> TIGR00424  APS_reduc: 5'-adenylylsulfate reductase, thioredoxin-independent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.5   1.3   4.1e-15   3.4e-12     139     325 ..     126     308 ..      61     313 .] 0.72

  Alignments for each domain:
  == domain 1    score: 43.5 bits;  conditional E-value: 4.1e-15
   TIGR00424 139 rpfrvfsldtgrlnpetyrlfdavekqygirie.ymfpdavevqalvrskglfsfyedghqeccrvrkvrplrralkgl..kawitgqrkdqspgtrseipvvqvdpvfegldggvgslvkwnpvanvegkdvwnflrtmdvpvntlhaqgyvsigcepctravlpgqh.....eregrwwwedak....akecglhkg 325
                   ++++ +dt  l  et  ++  ve+ ygi+   y   d+ + + +  + g   +  d  ++  +  kv pl+ra+k     awi g+r+d     r+ +      pv+eg         k np+a    ++ wn+lr   vp   lh  g+ s+g    t+ v   +      er gr+    ak      ecg+h  
  MMETSP1137-20121227|9476_1 126 DKIKIIFIDTFFLFEETTAFMREVEQYYGIKAHwYQCADCADAEEFYDKYGEDYWMTD-LEDYDKKCKVEPLQRAMKEAntDAWINGRRRDHGY-ERATL------PVWEG--------NKINPLAHWTFEECWNYLRKYKVPYHPLHDVGFSSLGDVQSTKKVPHEKWftyagERSGRFEGMKAKdgssKTECGIHSF 308
                 35788899***********************974778899999998888776544444.3444555599********752269********865.57666......56887........489****************************************9955432233339999987655552222359999975 PP

>> TIGR02039  CysD: sulfate adenylyltransferase, small subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.0   9.1e-07   0.00075      50     137 ..     128     222 ..      79     227 .. 0.74
   2 !    4.5   0.0    0.0058       4.8     174     200 ..     230     256 ..     222     263 .. 0.88

  Alignments for each domain:
  == domain 1    score: 17.0 bits;  conditional E-value: 9.1e-07
   TIGR02039  50 fpllhvdtgwkfreviafrdelvakldlelivhsnee.......giaeginpltegsakstdilktealkqaldknqfdaalgGarrdeeksrak 137
                   ++ +dt + f+e  af  e+ + ++++ +  +  +       + + g +      + + +  k e+l++a+++ + da + G rrd    ra 
  MMETSP1137-20121227|9476_1 128 IKIIFIDTFFLFEETTAFMREVEQYYGIKAHWYQCADcadaeefYDKYGEDYWMTDLEDYDKKCKVEPLQRAMKEANTDAWINGRRRDHGYERAT 222
                 36789*****************9999999886555441101111334567777777888999**************************9888875 PP

  == domain 2    score: 4.5 bits;  conditional E-value: 0.0058
   TIGR02039 174 rvfPlsnwteldiwryiaaenieivpl 200
                 ++ Pl+ wt  + w+y+ + +++  pl
  MMETSP1137-20121227|9476_1 230 KINPLAHWTFEECWNYLRKYKVPYHPL 256
                 678*****************9998887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (313 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       108  (0.0263286); expected 82.0 (0.02)
Passed bias filter:                       97  (0.023647); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.31u 0.14s 00:00:00.45 Elapsed: 00:00:00.54
# Mc/sec: 765.05
//
Query:       MMETSP1137-20121227|9478_1  [L=322]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (322 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       140  (0.0341297); expected 82.0 (0.02)
Passed bias filter:                      115  (0.0280351); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.17s 00:00:00.44 Elapsed: 00:00:00.42
# Mc/sec: 1011.92
//
Query:       MMETSP1137-20121227|9480_1  [L=195]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.7e-90  298.4   0.2    4.1e-90  298.3   0.2    1.0  1  TIGR01028 S7_S5_E_A: ribosomal protein S7
    2.8e-16   57.7   0.2    3.5e-16   57.4   0.2    1.1  1  TIGR01029 rpsG_bact: ribosomal protein S7


Domain annotation for each model (and alignments):
>> TIGR01028  S7_S5_E_A: ribosomal protein S7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  298.3   0.2     2e-93   4.1e-90       1     186 []       7     195 .]       7     195 .] 0.99

  Alignments for each domain:
  == domain 1    score: 298.3 bits;  conditional E-value: 2e-93
   TIGR01028   1 eikvfgkwstedvevkdaslkdyialeek...lvphtaGryakkkfakakvsiverlinkvmrkernngkklkavkivkeafeiiekrtkknPiqvlvdaienagPredttrvkygGiayrqavdvsplrrvdvalrlialGareaafknkksiaealaeeiiaaakkdsksyaikkkeelervaksar 186
                 e+k+fgkws+edvevkd+sl+dyia ++k   ++ph++Gr+ kk+f+ka+++iver++ ++mr +rnngkkl+av+ivk+afeii+ +t++nP+qv vda++n+gPred+trv+ gG+++rqa dvsplrrv++++ li++Garea+f+n+k+iae+la+ei++aak++s+syaikkk+e+ervaks+r
  MMETSP1137-20121227|9480_1   7 EVKLFGKWSFEDVEVKDISLEDYIACKPKyaqFLPHSQGRWQKKRFRKAQCPIVERMVCSMMRYGRNNGKKLMAVRIVKHAFEIIHLLTDQNPVQVYVDAVINCGPREDSTRVGGGGAVRRQACDVSPLRRVNQSIYLITTGAREASFRNIKTIAECLADEIMNAAKGSSNSYAIKKKDEIERVAKSNR 195
                 68**************************97788**********************************************************************************************************************************************************98 PP

>> TIGR01029  rpsG_bact: ribosomal protein S7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.4   0.2   1.7e-19   3.5e-16      19     147 ..      58     195 .]      45     195 .] 0.87

  Alignments for each domain:
  == domain 1    score: 57.4 bits;  conditional E-value: 1.7e-19
   TIGR01029  19 klvkklinkvml....dGKKslaekivykaleklkkktkkdplevfekalenvkPllevksrrvgGatyqvPvevreerrealairWlveaarkr...keksmaekLanelldalnn..eGaaikkredtHkmaeaNk 147
                  +v++++  +m     +GKK +a +iv++a+e ++  t+++p++v+  a+ n  P  +   +  gGa ++  + v++ rr   +i  + + ar+    + k++ae+La+e+++a++   +  aikk++++ ++a+ N+
  MMETSP1137-20121227|9480_1  58 PIVERMVCSMMRygrnNGKKLMAVRIVKHAFEIIHLLTDQNPVQVYVDAVINCGPREDSTRVGGGGAVRRQACDVSPLRRVNQSIYLITTGAREAsfrNIKTIAECLADEIMNAAKGssNSYAIKKKDEIERVAKSNR 195
                 478888888885333389***************************************99999999********************99988877743338999*************86115689*************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (195 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       101  (0.0246221); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.19u 0.12s 00:00:00.31 Elapsed: 00:00:00.31
# Mc/sec: 830.25
//
Query:       MMETSP1137-20121227|9481_1  [L=283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (283 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       136  (0.0331546); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.15s 00:00:00.38 Elapsed: 00:00:00.40
# Mc/sec: 933.82
//
Query:       MMETSP1137-20121227|9484_1  [L=199]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.4e-40  134.2   3.0    2.3e-20   70.2   0.2    2.1  2  TIGR02381 cspD: cold shock domain protein CspD
      0.007   13.0   0.0       0.99    5.9   0.0    2.0  2  TIGR00487 IF-2: translation initiation factor IF-2


Domain annotation for each model (and alignments):
>> TIGR02381  cspD: cold shock domain protein CspD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.2   0.2   1.1e-23   2.3e-20       3      56 ..       4      57 ..       1      68 [. 0.92
   2 !   64.6   0.1     6e-22   1.2e-18       2      63 ..     107     168 ..     106     171 .. 0.90

  Alignments for each domain:
  == domain 1    score: 70.2 bits;  conditional E-value: 1.1e-23
   TIGR02381  3 iGivkWfnnakGfGfisaegkdeDifahystiqmDGYrtLkaGqkvqfevvqge 56
                +G+vkWfn  kGfGfi++++ +eD+f h s+iq +G+rtL    +v+++v+q++
  MMETSP1137-20121227|9484_1  4 TGTVKWFNSQKGFGFITPDAGGEDLFVHQSAIQSEGFRTLNENDQVEYQVQQDD 57
                7*************************************************9987 PP

  == domain 2    score: 64.6 bits;  conditional E-value: 6e-22
   TIGR02381   2 eiGivkWfnnakGfGfisaegkdeDifahystiqmDGYrtLkaGqkvqfevvqgekGahatk 63 
                 +iG+vkWfn  kGfGf+++++ +eD+f h s+i+  G+r+L  G +v+f+vv++   ++a +
  MMETSP1137-20121227|9484_1 107 QIGTVKWFNSEKGFGFVAPKAGGEDLFVHQSAINAPGFRSLMEGEEVEFKVVEERGKQKAIE 168
                 68*************************************************98655455555 PP

>> TIGR00487  IF-2: translation initiation factor IF-2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.3   0.0   0.00069       1.4     213     244 ..      15      46 ..       8      81 .. 0.85
   2 !    5.9   0.0   0.00048      0.99     213     244 ..     119     150 ..     110     171 .. 0.82

  Alignments for each domain:
  == domain 1    score: 5.3 bits;  conditional E-value: 0.00069
   TIGR00487 213 eyglvpeewGGetifvpvsalkgkgideLlda 244
                  +g+++ + GGe  fv+ sa +++g   L ++
  MMETSP1137-20121227|9484_1  15 GFGFITPDAGGEDLFVHQSAIQSEGFRTLNEN 46 
                 6899999******************9988776 PP

  == domain 2    score: 5.9 bits;  conditional E-value: 0.00048
   TIGR00487 213 eyglvpeewGGetifvpvsalkgkgideLlda 244
                  +g+v+ + GGe  fv+ sa +  g   L++ 
  MMETSP1137-20121227|9484_1 119 GFGFVAPKAGGEDLFVHQSAINAPGFRSLMEG 150
                 5899**********************999985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (199 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        70  (0.0170648); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.21u 0.17s 00:00:00.38 Elapsed: 00:00:00.38
# Mc/sec: 691.21
//
Query:       MMETSP1137-20121227|9485_1  [L=59]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (59 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       775  (0.188932); expected 82.0 (0.02)
Passed bias filter:                      319  (0.0777669); expected 82.0 (0.02)
Passed Vit filter:                        37  (0.00901999); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.26s 00:00:00.41 Elapsed: 00:00:00.51
# Mc/sec: 152.69
//
Query:       MMETSP1137-20121227|9486_1  [L=100]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (100 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       155  (0.0377864); expected 82.0 (0.02)
Passed bias filter:                      133  (0.0324232); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.32
# Mc/sec: 412.47
//
Query:       MMETSP1137-20121227|9487_1  [L=227]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (227 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        65  (0.0158459); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.21s 00:00:00.37 Elapsed: 00:00:00.25
# Mc/sec: 1198.46
//
Query:       MMETSP1137-20121227|9488_1  [L=183]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (183 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        78  (0.0190151); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.18s 00:00:00.32 Elapsed: 00:00:00.37
# Mc/sec: 652.81
//
Query:       MMETSP1137-20121227|9489_1  [L=357]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   1.9e-131  435.6   0.0   2.2e-131  435.4   0.0    1.0  1  TIGR01179 galE: UDP-glucose 4-epimerase
    1.1e-31  107.9   0.0    1.7e-31  107.2   0.0    1.3  1  TIGR04180 EDH_00030: NAD dependent epimerase/dehydratase, LLPSF_EDH_00030 family
    1.6e-30  104.1   0.0    2.3e-30  103.6   0.0    1.2  1  TIGR01181 dTDP_gluc_dehyt: dTDP-glucose 4,6-dehydratase
    9.8e-29   98.3   0.0    1.3e-28   98.0   0.0    1.1  1  TIGR02197 heptose_epim: ADP-glyceromanno-heptose 6-epimerase
    1.3e-14   51.9   0.0    8.3e-12   42.7   0.0    2.0  2  TIGR02622 CDP_4_6_dhtase: CDP-glucose 4,6-dehydratase
    1.9e-13   47.8   0.0    8.6e-11   39.1   0.0    2.1  2  TIGR03466 HpnA: hopanoid-associated sugar epimerase
    1.9e-12   44.9   0.0    2.5e-10   37.9   0.0    2.2  2  TIGR01472 gmd: GDP-mannose 4,6-dehydratase
    5.5e-08   30.1   0.0    7.4e-08   29.6   0.0    1.1  1  TIGR01214 rmlD: dTDP-4-dehydrorhamnose reductase
    1.5e-06   25.2   0.0    2.5e-06   24.5   0.0    1.3  1  TIGR03589 PseB: UDP-N-acetylglucosamine 4,6-dehydratase
    6.5e-06   23.4   0.0     0.0063   13.6   0.0    2.1  2  TIGR01746 Thioester-redct: thioester reductase domain
    1.2e-05   22.7   0.0    1.8e-05   22.1   0.0    1.2  1  TIGR03206 benzo_BadH: 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase
    2.5e-05   20.7   0.0    3.4e-05   20.2   0.0    1.1  1  TIGR02632 RhaD_aldol-ADH: rhamnulose-1-phosphate aldolase/alcohol dehydrogenase
      3e-05   20.9   0.0    4.3e-05   20.4   0.0    1.2  1  TIGR04130 FnlA: UDP-N-acetylglucosamine 4,6-dehydratase/5-epimerase
    0.00017   19.1   0.0     0.0011   16.5   0.0    2.0  2  TIGR01777 yfcH: TIGR01777 family protein
    0.00043   17.4   0.0    0.00062   16.9   0.0    1.2  1  TIGR01963 PHB_DH: 3-hydroxybutyrate dehydrogenase
     0.0019   15.5   0.1     0.0028   15.0   0.1    1.2  1  TIGR02415 23BDH: acetoin reductases
     0.0038   14.8   0.0     0.0061   14.1   0.0    1.3  1  TIGR01830 3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase
     0.0047   12.1   0.1      0.014   10.5   0.0    1.6  2  TIGR03443 alpha_am_amid: L-aminoadipate-semialdehyde dehydrogenase
     0.0074   13.6   0.1       0.01   13.2   0.1    1.2  1  TIGR01832 kduD: 2-deoxy-D-gluconate 3-dehydrogenase
  ------ inclusion threshold ------
      0.029   11.9   0.0      0.047   11.2   0.0    1.3  1  TIGR01829 AcAcCoA_reduct: acetoacetyl-CoA reductase
      0.041    8.3   0.7      0.094    7.1   0.0    1.7  2  TIGR02813 omega_3_PfaA: polyketide-type polyunsaturated fatty acid synthase PfaA


Domain annotation for each model (and alignments):
>> TIGR01179  galE: UDP-glucose 4-epimerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  435.4   0.0  1.1e-133  2.2e-131       1     330 [.      23     354 ..      23     356 .. 0.99

  Alignments for each domain:
  == domain 1    score: 435.4 bits;  conditional E-value: 1.1e-133
   TIGR01179   1 kiLvtGgaGyiGshvvrqllekgkevvvlDnlskgskealkalekit..evklvegdladkekleavleeekidaviHfaaliavgEsvkePlkYYennvvntleLleamqkagvkkliFsssaavYgesekvpisEesplnpinpYGrsklmvErilkdlkkadkelkvviLRYFnvaGAdeegeiGeasknat.hliklvaevavgkrekleifGtdyptkDGtcvRDyiHveDlaeaHlaalealeeggesevynlGagqgfsvkevieavkkvsgkdikveladrRaGDpaslvadaskikrelgwkpkyddLeeiiksawdWekklke 330
                 k+LvtGgaGyiGsh+v ++l++g +v v+D l ++s+e+l++++++t  ++++ + dl d + ++++++++k+ aviHfa+l+avgEsv++P  YYenn+++tl+Ll+am++  +k+++Fsssa+vYg++ +vp++E++p++++npYGr+kl +E ilkdl k+d++++v++LRYFn++GA+++g+iGe++k+++ +l+++v +vavg r +l++fG+dypt+DGt+vRDyiHv Dla++Hl al +le++ +  +ynlG+g+g+sv+++++a++k++gk+i++++a+rR+GD+a+ ++d+s +k+e+gw+++++ L+++++++w+W + +++
  MMETSP1137-20121227|9489_1  23 KVLVTGGAGYIGSHTVLEMLNAGIDVTVMDSLYNASEESLRRVKELTgkDIAFHKVDLLDVKGMTELFTSTKFFAVIHFAGLKAVGESVAKPCLYYENNITGTLNLLSAMKAGDCKNIVFSSSATVYGDPASVPVTEDFPTSATNPYGRTKLFIEYILKDLYKSDNSWNVCLLRYFNPVGAHKSGRIGEDPKGIPnNLMPYVQQVAVGXRAELSVFGGDYPTHDGTGVRDYIHVVDLAKGHLCALTKLESNPGCVTYNLGTGKGYSVLDLVKAFSKACGKEIPYKMAPRREGDVAVTYGDPSLAKKEMGWEAELG-LDDMCADSWRWISGNQN 354
                 79********************************************9999*************************************************************************************************************************************************9***********************************************************************************************************************.***********998876 PP

>> TIGR04180  EDH_00030: NAD dependent epimerase/dehydratase, LLPSF_EDH_00030 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  107.2   0.0     9e-34   1.7e-31       1     295 [.      24     335 ..      24     337 .. 0.86

  Alignments for each domain:
  == domain 1    score: 107.2 bits;  conditional E-value: 9e-34
   TIGR04180   1 vlvtGadGfiGshlvealvekGaevral.vlynsfnswGwldevekevkkeievvlGdirdaesvkkavkgvd..vvfhlaaliaiPysyvapesyvetnvkGtlnvlqaardlevekvvhtstsevyGtaqyvPidekhplqaqsPysaskigadqlalsfyrsfe.lPvaivrPfntyGPrqsara.....viPt....iitqilsgkk.kik.lGslsPt......rdfnyvkdtvegf.iavaesdkavGev.inigsnfeisigdtvkliaeilgkeveivtdeerlrPekseverlladnskikeltgwkpk 295
                 vlvtG  G+iGsh v +++++G++v+ +  lyn+ ++   l +v++ + k+i   + d+ d + + +   +++  +v+h+a l a+  s   p  y e n++Gtln+l a +  + + +v +s++ vyG    vP++e+ p++a  Py  +k+  + + +  y+s +   v ++r fn  G  +s r       iP      ++q++ g + +++ +G   Pt      rd+ +v d ++g  +a+++ ++  G v  n+g+++  s+ d+vk  +++ gke+  ++  +r    + +v   ++d s +k+ +gw+++
  MMETSP1137-20121227|9489_1  24 VLVTGGAGYIGSHTVLEMLNAGIDVTVMdSLYNASEE--SLRRVKELTGKDIAFHKVDLLDVKGMTELFTSTKffAVIHFAGLKAVGESVAKPCLYYENNITGTLNLLSAMKAGDCKNIVFSSSATVYGDPASVPVTEDFPTSATNPYGRTKLFIEYILKDLYKSDNsWNVCLLRYFNPVGAHKSGRIgedpkGIPNnlmpYVQQVAVGXRaELSvFGGDYPThdgtgvRDYIHVVDLAKGHlCALTKLESNPGCVtYNLGTGKGYSVLDLVKAFSKACGKEIPYKMAPRR----EGDVAVTYGDPSLAKKEMGWEAE 335
                 89************************99567998776..5999999999******************9988763379**************************************************************************************9976268****************9633333466422224678888765245525777777555555889999999999615788888888875269************************99887776....57888899999999999999876 PP

>> TIGR01181  dTDP_gluc_dehyt: dTDP-glucose 4,6-dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  103.6   0.0   1.2e-32   2.3e-30       1     316 [.      23     354 ..      23     357 .] 0.83

  Alignments for each domain:
  == domain 1    score: 103.6 bits;  conditional E-value: 1.2e-32
   TIGR01181   1 klLvtGGaGfiGsnfvryileetpdaevvvlDkLtyagnkenlkdlede..erysfvkgdiadrelverllkeedvdavvnfaaeshvDrsisepeafietnvvGtytlleavrkelkevrllhistDevyGdlekddaeftettplaPssPysaskaasdllvra.yartyglpvlitrcsnnyGpyq..........fpekliPllitnal.agkklpvyG......dGqqvrDwlyveDhcraielvlekgrvg...evyniggeeertnlevvkiilelldkdedlieyvedrpGhDrryaldaskikreLgwkpkvtfeeglrktvkWylenes 316
                 k+LvtGGaG+iGs  v  +l+     +v+v+D L y + +e+l+ +++   + ++f k+d+ d + +++l++ ++  av++fa    v +s+ +p  + e n+ Gt  ll a+++  +  +++  s   vyGd  +    +te  p + ++Py  +k   + +++  y+     +v + r  n +G+++           p+ l+P + + a+    +l v+G      dG+ vrD+++v D +++  + l+k ++     +yn+g+++  ++l++vk   +  +k+    +    r G+      d s  k+e+gw+ +  +++  + + +W   n++
  MMETSP1137-20121227|9489_1  23 KVLVTGGAGYIGSHTVLEMLNAG--IDVTVMDSL-YNASEESLRRVKELtgKDIAFHKVDLLDVKGMTELFTSTKFFAVIHFAGLKAVGESVAKPCLYYENNITGTLNLLSAMKAG-DCKNIVFSSSATVYGDPASV--PVTEDFPTSATNPYGRTKLFIEYILKDlYKSDNSWNVCLLRYFNPVGAHKsgrigedpkgIPNNLMPYVQQVAVgXRAELSVFGgdypthDGTGVRDYIHVVDLAKGHLCALTKLESNpgcVTYNLGTGKGYSVLDLVKAFSKACGKE-IPYKMAPRREGDVAVTYGDPSLAKKEMGWEAELGLDDMCADSWRWISGNQN 354
                 68*******************76..678*****9.6777889999987522689***********************************************************994.444577789999****9988..58********************999973566677899999*99999988733222222223555666554444313457899997888888****************9999988665322368***********************64.44567778888765555699999**********************998875 PP

>> TIGR02197  heptose_epim: ADP-glyceromanno-heptose 6-epimerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.0   0.0   6.5e-31   1.3e-28       1     273 [.      24     311 ..      24     331 .. 0.78

  Alignments for each domain:
  == domain 1    score: 98.0 bits;  conditional E-value: 6.5e-31
   TIGR02197   1 iivTGgaGfiGsnlvaalnekgetdilvvDklrkge.....kllnlkdeeiadyidkeellerleke.elkkveavfHegAisdTteldge..llmenNyeyskellelcaeke.vkliYASSAavYGdseeefreekelerPlNvYgySKllfDelvrkevlkekksaqvvGlryFNVyGpr......EehKgkmaSvvfklfnqi..kkekkvkLFksseqlkdGeqlRDFvyvkDvvkvnllllek...keksGifnvGtgkarsfndlaaavvkalgkdekieyidmPe 273
                 ++vTGgaG+iGs  v ++ ++g  d+ v+D+l +++     ++++l++++ia +  +   ++ +++  + +k+ av+H + + +  e  ++  l  enN++ +++ll++ ++ + +++++ SSA+vYGd ++   +e+  +   N Yg  Kl+++ +++  + k+++s +v+ lryFN  G +      E+ Kg    ++   ++q+    + ++ +F     ++dG  +RD+++v D +k  l +l k   +  +  +n+Gtgk  s  dl++a  ka+gk  +i y   P 
  MMETSP1137-20121227|9489_1  24 VLVTGGAGYIGSHTVLEMLNAG-IDVTVMDSLYNASeeslrRVKELTGKDIAFHKVDLLDVKGMTELfTSTKFFAVIHFAGLKAVGESVAKpcLYYENNITGTLNLLSAMKAGDcKNIVFSSSATVYGDPASVPVTEDFPTSATNPYGRTKLFIEYILK-DLYKSDNSWNVCLLRYFNPVGAHksgrigEDPKGIPNNLM-PYVQQVavGXRAELSVFGGDYPTHDGTGVRDYIHVVDLAKGHLCALTKlesNPGCVTYNLGTGKGYSVLDLVKAFSKACGK--EIPYKMAPR 311
                 69***************99999.79*******996666677999999999985433333344444334668999****9988887766554226679**********9988766156889********877777777777789********98877775.888999*************998634444466777655544.344444005566677799998889****************98887765110444568**********************96..678777765 PP

>> TIGR02622  CDP_4_6_dhtase: CDP-glucose 4,6-dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.7   0.0   4.2e-14   8.3e-12       4     136 ..      21     152 ..      18     192 .. 0.81
   2 !    7.3   0.0    0.0025       0.5     223     330 ..     249     349 ..     244     355 .. 0.81

  Alignments for each domain:
  == domain 1    score: 42.7 bits;  conditional E-value: 4.2e-14
   TIGR02622   4 gkkvlvtGhtGfkGsWlslwLkelGaevaGy.sldpetkpnlfellklakklkdssvlgdirdaeklekaieevkPeivfhlaaqplvrksYkdPletfetnvlGtvnlleavralesvkavvlvtsDkvYenk 136
                  kkvlvtG  G+ Gs  +l + + G +v+ + sl  +++++l  + +l+ k     +  d+ d + ++++++++k   v+h+a    v +s ++P+  +e n+ Gt+nll a++a +  k +v   s  vY + 
  MMETSP1137-20121227|9489_1  21 AKKVLVTGGAGYIGSHTVLEMLNAGIDVTVMdSLYNASEESLRRVKELTGKDI-AFHKVDLLDVKGMTELFTSTKFFAVIHFAGLKAVGESVAKPCLYYENNITGTLNLLSAMKAGD-CKNIVFSSSATVYGDP 152
                 79**************************9884666667777777777766654.47999******************************************************9877.6777888888888654 PP

  == domain 2    score: 7.3 bits;  conditional E-value: 0.0025
   TIGR02622 223 avrPWqhvLepLsGYlllaeklledeaelaeafnfGPeaeenkkvvelvkkalellagkkaeiekksdkeapheaklLkLdsdkakkklgwkprlsleeaveatveWy 330
                  vr + hv++  +G+l   +kl ++   +  ++n+G  +    +v +lvk+ +++  gk++ ++  +++++  +  +   d + akk++gw+++l+l++      +W 
  MMETSP1137-20121227|9489_1 249 GVRDYIHVVDLAKGHLCALTKLESNPGCV--TYNLGTGK--GYSVLDLVKAFSKAC-GKEIPYK--MAPRREGDVAVTYGDPSLAKKEMGWEAELGLDDMCADSWRWI 349
                 689999***********999998885554..6****887..788999988877766.5455544..56667778888899******************9998888886 PP

>> TIGR03466  HpnA: hopanoid-associated sugar epimerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.1   0.0   4.4e-13   8.6e-11       2     173 ..      23     203 ..      22     210 .. 0.78
   2 !    6.7   0.0    0.0031       0.6     197     256 ..     246     310 ..     232     340 .. 0.73

  Alignments for each domain:
  == domain 1    score: 39.1 bits;  conditional E-value: 4.4e-13
   TIGR03466   2 kvlvtGatGFvGsavvrllleeGeevrvlvr.....kts..drrnleeldvEiveGdlkdeaslkkalkGce..alfHvAAdyrl..wakdpeelykanvegtravleaAleagvervvytssvatlgvkedgkeadettpsklekmiGhYkrskflAEqaveelaae..glpvvivnPstPiGp 173
                 kvlvtG++G++Gs+ v ++l++G +v v+       ++s  + ++l++ d+   + dl d + +++  +  +  a++H A    +   +++p   y++n+ gt ++l+a +  + + +v++ss ++ g      +++e+ p+++++   +Y r+k+  E ++++l ++    +v ++    P+G 
  MMETSP1137-20121227|9489_1  23 KVLVTGGAGYIGSHTVLEMLNAGIDVTVMDSlynasEESlrRVKELTGKDIAFHKVDLLDVKGMTELFTSTKffAVIHFAGLKAVgeSVAKPCLYYENNITGTLNLLSAMKAGDCKNIVFSSSATVYG-DPASVPVTEDFPTSATN---PYGRTKLFIEYILKDLYKSdnSWNVCLLRYFNPVGA 203
                 89**************************9642211122211223455556677788999999999988887744799*99887773357788999*************************99988887.55668999999998776...78999*****99999998743456666777777775 PP

  == domain 2    score: 6.7 bits;  conditional E-value: 0.0031
   TIGR03466 197 vdtgL.nlvdvddvaegHllAler..GriG.erYiLG.genltlkqlleklaeitglkapklklp 256
                   tg+ + ++v d a+gHl Al++   + G   Y LG g+  ++ +l+++ ++  g+++p    p
  MMETSP1137-20121227|9489_1 246 DGTGVrDYIHVVDLAKGHLCALTKleSNPGcVTYNLGtGKGYSVLDLVKAFSKACGKEIPYKMAP 310
                 556653579*************9833334424788884567788888888888888887765554 PP

>> TIGR01472  gmd: GDP-mannose 4,6-dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.9   0.0   1.3e-12   2.5e-10       2     275 ..      23     307 ..      22     316 .. 0.73
   2 ?    5.0   0.0     0.013       2.6     302     331 ..     313     342 ..     311     347 .. 0.87

  Alignments for each domain:
  == domain 1    score: 37.9 bits;  conditional E-value: 1.3e-12
   TIGR01472   2 valitGitGqdGsylaelllekgyevhGlirrsssfnterlehlyeekhkeekalflhyGdltdsssllklieeikpteiynlaaqshvkvsfeipeytadvdgiGtlrlleavrildlakkirfyqastselyGevkeipqkektpfnprspyaaaklyayyivvnyreayglfavnGi.lfn....hesprrGet..fvtrkitravakialgleeklyl..Gnldak.....rdwGyakdyveamwlmlq..qdkpd..dyviatgettsvrefvevsfelvgitlewk 275
                 + l+tG +G  Gs+    +l+ g +v  +    s +n++  e l + k+ + k + +h  dl d + +++l +++k   +  +a    v  s   p    + + +Gtl+ll a++  d  k+i f  +s++ +yG+  ++p +e+ p     py+ +kl+  yi ++  ++ + + v  +  fn    h+s r Ge+   +   +   v ++a+g +  l++  G+  ++     rd+ +  d  +     l   + +p    y + tg+ +sv ++v+   +  g+++ +k
  MMETSP1137-20121227|9489_1  23 KVLVTGGAGYIGSHTVLEMLNAGIDVTVMD---SLYNASE-ESLRRVKELTGKDIAFHKVDLLDVKGMTELFTSTKFFAVIHFAGLKAVGESVAKPCLYYENNITGTLNLLSAMKAGD-CKNIVF--SSSATVYGDPASVPVTEDFPTSATNPYGRTKLFIEYILKDLYKSDNSWNVCLLrYFNpvgaHKSGRIGEDpkGIPNNLMPYVQQVAVGXRAELSVfgGDYPTHdgtgvRDYIHVVDLAKGHLCALTklESNPGcvTYNLGTGKGYSVLDLVKAFSKACGKEIPYK 307
                 678888889999988888888888887663...4455443.556666666667799****************************************99999999**********9755.567777..68889*********************************9988887777665442465555588888888622467788888888888887766542244322211122555554444443332232113344322688888888888888887777777777776 PP

  == domain 2    score: 5.0 bits;  conditional E-value: 0.013
   TIGR01472 302 ptevdlllGdatkakeklgwkrevslkelv 331
                   +v +  Gd++ ak+++gw+ e +l+++ 
  MMETSP1137-20121227|9489_1 313 EGDVAVTYGDPSLAKKEMGWEAELGLDDMC 342
                 56788899*****************99986 PP

>> TIGR01214  rmlD: dTDP-4-dehydrorhamnose reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.6   0.0   3.8e-10   7.4e-08       1     138 [.      23     183 ..      23     194 .. 0.92

  Alignments for each domain:
  == domain 1    score: 29.6 bits;  conditional E-value: 3.8e-10
   TIGR01214   1 rilitGakgqlgreLveqlskegsevvaltrs......................qldledpealeellreikPdvvvntaAytdVDkaEseaekayavNalatenlAraaarvgallvhi.STDYvFDGekkrpYreedetnPlnvYgqsKlaGEvavraa 138
                 ++l+tG++g +g++ v ++ + g +v+++++                       ++dl d + ++el+ ++k  +v++ a   +V ++  ++   y+ N ++t nl  a ++ +  ++   S   v+   ++ p +e+ +t   n Yg++Kl  E + +++
  MMETSP1137-20121227|9489_1  23 KVLVTGGAGYIGSHTVLEMLNAGIDVTVMDSLynaseeslrrvkeltgkdiafhKVDLLDVKGMTELFTSTKFFAVIHFAGLKAVGESVAKPCLYYENNITGTLNLLSAMKAGDCKNIVFsSSATVYGDPASVPVTEDFPTSATNPYGRTKLFIEYILKDL 183
                 79******************9****99999989999**********************************************************************999999998766551566777778999*******************988877665 PP

>> TIGR03589  PseB: UDP-N-acetylglucosamine 4,6-dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.5   0.0   1.3e-08   2.5e-06       3     171 ..      20     203 ..      18     207 .. 0.75

  Alignments for each domain:
  == domain 1    score: 24.5 bits;  conditional E-value: 1.3e-08
   TIGR03589   3 nnksilitGgtGsfGkkfikklleky.kvkki.iiysrdelkqfelqqkfeedklrffiGdvrdkerleraledvd..lvvhaaalkqvpaaeynPleciktnieGaenvidaaldkgvkkvvalst.....dkaanPv.........nlyGatklasdklfvaannisGekktrfsvvryGnvvGs 171
                   k +l+tGg+G  G + + ++l+   +v  +  +y   e    +++ + + + + f   d+ d + +++ +       v+h a lk v  +   P+   + ni+G+ n++ a  + + k++v  s+     d a+ Pv         n yG tkl  +  ++  + ++ +++ + ++ ry n vG+
  MMETSP1137-20121227|9489_1  20 AAKKVLVTGGAGYIGSHTVLEMLNAGiDVTVMdSLYNASEESLRRVK-ELTGKDIAFHKVDLLDVKGMTELFTSTKffAVIHFAGLKAVGESVAKPCLYYENNITGTLNLLSAMKAGDCKNIVFSSSatvygDPASVPVtedfptsatNPYGRTKLFIE--YILKDLYKSDNSWNVCLLRYFNPVGA 203
                 5789***************9999876344433236666665555544.44557899999999999999988876552269*****************************************99665323344778887755555555567888888777..45567777788888888888888876 PP

>> TIGR01746  Thioester-redct: thioester reductase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.8   0.0    0.0019      0.37       1      45 [.      23      66 ..      23      78 .. 0.77
   2 !   13.6   0.0   3.2e-05    0.0063     111     194 ..     120     199 ..     117     213 .. 0.77

  Alignments for each domain:
  == domain 1    score: 7.8 bits;  conditional E-value: 0.0019
   TIGR01746  1 tvlLTGAtGfLGaylleeLlrrsteakviClVRakseehaleRLr 45
                +vl+TG  G++G + + e+l+   + +v+     +se + l+R++
  MMETSP1137-20121227|9489_1 23 KVLVTGGAGYIGSHTVLEMLNAGIDVTVMDSLYNASE-ESLRRVK 66
                69******************99877776654444443.4566655 PP

  == domain 2    score: 13.6 bits;  conditional E-value: 3.2e-05
   TIGR01746 111 aNVegtvevlrlaasgkakpliyvStlsvlaaielsakvevddatetkkpglatGYaqSKwvaEllvreasdr..glpvtivRpGr 194
                  N+ gt ++l    +g +k +++ S++ v+ +  ++ +v v++++ t+     ++Y+++K   E++++   +     +v+ +R  +
  MMETSP1137-20121227|9489_1 120 NNITGTLNLLSAMKAGDCKNIVFSSSATVYGD--PA-SVPVTEDFPTSAT---NPYGRTKLFIEYILKDLYKSdnSWNVCLLRYFN 199
                 7****************************996..33.4777777777666...69***********99865543366666666555 PP

>> TIGR03206  benzo_BadH: 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.1   0.0     9e-08   1.8e-05       3      65 ..      21      84 ..      19      96 .. 0.89

  Alignments for each domain:
  == domain 1    score: 22.1 bits;  conditional E-value: 9e-08
   TIGR03206  3 dkvaivtgggggiggaicrrfaeegakvavldlnaeaaekvaaairekggkaeav.avditdra 65
                 k ++vtgg+g ig+ + + + + g  v+v+d   +a+e+   +++e  gk  a+ +vd+ d +
  MMETSP1137-20121227|9489_1 21 AKKVLVTGGAGYIGSHTVLEMLNAGIDVTVMDSLYNASEESLRRVKELTGKDIAFhKVDLLDVK 84
                6899**********************************************99998458887765 PP

>> TIGR02632  RhaD_aldol-ADH: rhamnulose-1-phosphate aldolase/alcohol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   0.0   1.7e-07   3.4e-05     407     497 ..      14     107 ..       7     120 .. 0.79

  Alignments for each domain:
  == domain 1    score: 20.2 bits;  conditional E-value: 1.7e-07
   TIGR02632 407 PkekelarrvalvtGgasGiGrevarrlvdeGahvvladldaeaaeavaaelvdkfGadkavalkldvtdeeavkaafae....valayGGvdiv 497
                  +  ++a + +lvtGga+ iG+ + + + + G  v + d   +a e+  + +++  G+d+a   k+d+ d + +++ f      +++ + G+ +v
  MMETSP1137-20121227|9489_1  14 TPTSTMAAKKVLVTGGAGYIGSHTVLEMLNAGIDVTVMDSLYNASEESLRRVKELTGKDIAFH-KVDLLDVKGMTELFTStkffAVIHFAGLKAV 107
                 55678999999************************************************9986.5555555555544443111245667777665 PP

>> TIGR04130  FnlA: UDP-N-acetylglucosamine 4,6-dehydratase/5-epimerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   0.0   2.2e-07   4.3e-05       4     129 ..      21     149 ..      18     156 .. 0.83

  Alignments for each domain:
  == domain 1    score: 20.4 bits;  conditional E-value: 2.2e-07
   TIGR04130   4 dkillitggtgsfgnavlrrfldtdikeirifsrdekkqddmr..kkynnkklkfyigdvrdyrsilnatrgvdf..iyhaaalkqvpscefhpleavktnvlgtenvleaaianevkrvvclstdkavy 129
                  k +l+tgg+g +g   +  +l++ i    + s  +  ++ +r  k+   k + f+  d+ d + + +      f  + h a lk v     +p      n+ gt n+l a  a + k +v  s   +vy
  MMETSP1137-20121227|9489_1  21 AKKVLVTGGAGYIGSHTVLEMLNAGIDVTVMDSLYNASEESLRrvKELTGKDIAFHKVDLLDVKGMTELFTSTKFfaVIHFAGLKAVGESVAKPCLYYENNITGTLNLLSAMKAGDCKNIVFSS-SATVY 149
                 567899*********99999***9999888888888888888844577889999999998888887766555555336899**************************************99655.44555 PP

>> TIGR01777  yfcH: TIGR01777 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0   5.5e-06    0.0011       1     128 [.      24     161 ..      24     172 .. 0.76
   2 ?    0.0   0.0      0.56   1.1e+02     187     243 ..     243     302 ..     233     311 .. 0.73

  Alignments for each domain:
  == domain 1    score: 16.5 bits;  conditional E-value: 5.5e-06
   TIGR01777   1 vlitGgtGliGralveelekkghevviltrskekekeekkesakevaee............aeee.....alegvdavinLaGepiadkrwteerkkeileSRikttealvelikkakqkpkvlisasavgyYgeseekelteee 128
                 vl+tGg G iG++ v e+ ++g +v+++    ++++e+   ++ke + +            +        + +++ avi+ aG + + +  + ++    +e  i+ t  l++++k+ +  +k ++ +s+ ++Yg+  + ++te+ 
  MMETSP1137-20121227|9489_1  24 VLVTGGAGYIGSHTVLEMLNAGIDVTVMDSLYNASEESL-RRVKELTGKdiafhkvdlldvK--GmtelfTSTKFFAVIHFAGLKAVGE--SVAKPCLYYENNITGTLNLLSAMKAGD--CKNIVFSSSATVYGDPASVPVTEDF 161
                 79************************9987666544444.3444444334555666665541..145555889999*******998865..44555567899*************999..777888888899***9999999986 PP

  == domain 2    score: 0.0 bits;  conditional E-value: 0.56
   TIGR01777 187 klGsGrqwlsWihleDlvklilfalen.eevsG..vvNataPepvrnkefakalakalhr 243
                 +  +G+ +  +ih+ Dl+k  l al++ e+  G   +N+   +  +  +++ka++ka ++
  MMETSP1137-20121227|9489_1 243 PTHDGTGVRDYIHVVDLAKGHLCALTKlESNPGcvTYNLGTGKGYSVLDLVKAFSKACGK 302
                 6668999999********999888877244456223688888888888888888877776 PP

>> TIGR01963  PHB_DH: 3-hydroxybutyrate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.0   3.2e-06   0.00062       2      69 ..      22      90 ..      21     104 .. 0.88

  Alignments for each domain:
  == domain 1    score: 16.9 bits;  conditional E-value: 3.2e-06
   TIGR01963  2 kvalvtGaasGiglaiakelaaaGakvvvndle.eeaaeaaakeleeaggevlalkadvtkeeeiadli 69
                k +lvtG a+ ig +   e+ +aG +v+v d   ++++e++++  e +g +++ +k+d+ + + +++l 
  MMETSP1137-20121227|9489_1 22 KKVLVTGGAGYIGSHTVLEMLNAGIDVTVMDSLyNASEESLRRVKELTGKDIAFHKVDLLDVKGMTELF 90
                789************************999877588889999999999999*******99988776655 PP

>> TIGR02415  23BDH: acetoin reductases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.1   1.4e-05    0.0028       2      67 ..      23      89 ..      22     108 .. 0.77

  Alignments for each domain:
  == domain 1    score: 15.0 bits;  conditional E-value: 1.4e-05
   TIGR02415  2 valvtGaaqGiGkaiaerLakdGfavavadlneetaketakelkekgtkav.avkldvsdkseveea 67
                  lvtG+a  iG+  +  + + G++v+v+d   ++  e  +++ke  +k + + k+d+ d + + e+
  MMETSP1137-20121227|9489_1 23 KVLVTGGAGYIGSHTVLEMLNAGIDVTVMDSLYNASEESLRRVKELTGKDIaFHKVDLLDVKGMTEL 89
                579***************************9988888888888886555541567776665555544 PP

>> TIGR01830  3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.0   3.1e-05    0.0061       1      69 [.      24      92 ..      24      98 .. 0.84

  Alignments for each domain:
  == domain 1    score: 14.1 bits;  conditional E-value: 3.1e-05
   TIGR01830  1 alvtGasrgiGkaiakklakegakvviterskeekaeelaeelkeagvkaaavkldvsdeeevkelvee 69
                +lvtG++  iG+ +++++ ++g++v+++++  +++ e+l+   + +g++ a  k+d+ d + ++el+++
  MMETSP1137-20121227|9489_1 24 VLVTGGAGYIGSHTVLEMLNAGIDVTVMDSLYNASEESLRRVKELTGKDIAFHKVDLLDVKGMTELFTS 92
                69**************************9877776666665555589999999***9999988887765 PP

>> TIGR03443  alpha_am_amid: L-aminoadipate-semialdehyde dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.5   0.0   7.2e-05     0.014     960    1021 ..       7      67 ..       2      77 .. 0.73
   2 ?   -1.3   0.0      0.27        53    1084    1113 ..     119     148 ..     115     160 .. 0.89

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 7.2e-05
   TIGR03443  960 syaskk..elaaeeevtvfltGatGflGsfilrdlltrrkssslkvvahvrakseeaglerlrk 1021
                   y++++   +++ + ++v++tG++G++Gs+ + ++l+     ++ v+  +  +s e++l r+++
  MMETSP1137-20121227|9489_1    7 AYPARAatPTSTMAAKKVLVTGGAGYIGSHTVLEMLNAG--IDVTVMDSLYNAS-EESLRRVKE 67  
                  56666633345556789*******************987..6777776665544.446788776 PP

  == domain 2    score: -1.3 bits;  conditional E-value: 0.27
   TIGR03443 1084 danvigtinvlklaaegkaklfsfvsstsa 1113
                  + n++gt+n l+  ++g  k + f ss+++
  MMETSP1137-20121227|9489_1  119 ENNITGTLNLLSAMKAGDCKNIVFSSSATV 148 
                  679*********************999876 PP

>> TIGR01832  kduD: 2-deoxy-D-gluconate 3-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   0.1   5.2e-05      0.01       3      73 ..      19      92 ..      17     104 .. 0.85

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 5.2e-05
   TIGR01832  3 leGkvalvtGantGlGqgiavglaeaGadivgvg..iselsetqekvea.lGrkflslkadladeeaakalvde 73
                ++ k++lvtG    +G   ++ + +aG d+  ++   ++ +e+  +v++ +G+ +   k+dl d +++++l  +
  MMETSP1137-20121227|9489_1 19 MAAKKVLVTGGAGYIGSHTVLEMLNAGIDVTVMDslYNASEESLRRVKElTGKDIAFHKVDLLDVKGMTELFTS 92
                56899************************98887545677889999976268899999*******999988765 PP

>> TIGR01829  AcAcCoA_reduct: acetoacetyl-CoA reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   0.00024     0.047       3      68 ..      24      89 ..      22      95 .. 0.88

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 0.00024
   TIGR01829  3 alvtGglgGiGtaickrlakdGykvvanvapneerakewlqekevegfdvavvkadvssfeeakaa 68
                 lvtGg g iG+    ++ ++G+ v    +  +++++++ + ke++g+d+a+ k+d+ +++  ++ 
  MMETSP1137-20121227|9489_1 24 VLVTGGAGYIGSHTVLEMLNAGIDVTVMDSLYNASEESLRRVKELTGKDIAFHKVDLLDVKGMTEL 89
                59**********************988877788899999999**************9888766655 PP

>> TIGR02813  omega_3_PfaA: polyketide-type polyunsaturated fatty acid synthase PfaA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.1      0.13        25    1978    2017 ..       2      41 ..       1      44 [. 0.83
   2 ?    7.1   0.0   0.00048     0.094    2147    2185 ..     116     153 ..      82     159 .. 0.82

  Alignments for each domain:
  == domain 1    score: -1.0 bits;  conditional E-value: 0.13
   TIGR02813 1978 vavvadtaiaknssaaldkddkvlvtGGakGvtfecalel 2017
                  +++++  ++   +++    ++kvlvtGGa  +  + +le+
  MMETSP1137-20121227|9489_1    2 ISTSTAYPARAATPTSTMAAKKVLVTGGAGYIGSHTVLEM 41  
                  56666777777888889999**********9999999987 PP

  == domain 2    score: 7.1 bits;  conditional E-value: 0.00048
   TIGR02813 2147 avygtkvdGlesllaalnaekvkllalfssaaGfyGntG 2185
                  + y   ++G ++ll+a++a + k ++ fss+a  yG++ 
  MMETSP1137-20121227|9489_1  116 LYYENNITGTLNLLSAMKAGDCKNIV-FSSSATVYGDPA 153 
                  569999******************96.899999***975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (357 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       133  (0.0324232); expected 82.0 (0.02)
Passed bias filter:                      131  (0.0319356); expected 82.0 (0.02)
Passed Vit filter:                        37  (0.00901999); expected 4.1 (0.001)
Passed Fwd filter:                        21  (0.00511945); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              21  [number of targets reported over threshold]
# CPU time: 0.39u 0.24s 00:00:00.63 Elapsed: 00:00:00.60
# Mc/sec: 785.34
//
Query:       MMETSP1137-20121227|9490_1  [L=112]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (112 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       125  (0.0304729); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.14s 00:00:00.30 Elapsed: 00:00:00.30
# Mc/sec: 492.76
//
Query:       MMETSP1137-20121227|9491_1  [L=284]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.4e-23   80.7   0.0    3.4e-23   80.2   0.0    1.1  1  TIGR03137 AhpC: peroxiredoxin


Domain annotation for each model (and alignments):
>> TIGR03137  AhpC: peroxiredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.2   0.0   8.2e-27   3.4e-23      30     177 ..      82     238 ..      62     247 .. 0.85

  Alignments for each domain:
  == domain 1    score: 80.2 bits;  conditional E-value: 8.2e-27
   TIGR03137  30 kGkwsvlvfypadftfvcpteledladkyeelkelgvevysvstdthfvhkawhd....eseaigkikypllgdptkkltrnfdvli....eeag..laergtfvidpeGvikvvevtaegigrdaeellrkvkaaqyvaahdGevcpakwkegeetl 177
                   +w +l+ +padft vc te++ +a ky+ l e +v++ + s+d   +h++w      + e+  +ik+p++gd  ++++ +++++     +++g  l+ r+ f+idpe +ik++     ++gr+ +e+ r v+a q  a +     pa+w +++e++
  MMETSP1137-20121227|9491_1  82 GDSWGILFSHPADFTPVCTTEIGRVALKYDWLTERNVKIATLSVDPVDSHNTWLSdvvaHCENKVEIKFPIIGDADRSISMKYNMFDpgnlDDTGlpLTIRAVFIIDPEKKIKLILNYPASVGRNLDEICRCVEALQLSA-KSSIATPANWPNNHESI 238
                 458**************************************************75122245667789****************99862222456633588************************************9765.567789****9988765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (284 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        46  (0.011214); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.22u 0.16s 00:00:00.38 Elapsed: 00:00:00.38
# Mc/sec: 986.44
//
Query:       MMETSP1137-20121227|9493_1  [L=165]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (165 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       215  (0.0524135); expected 82.0 (0.02)
Passed bias filter:                      166  (0.0404681); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.17s 00:00:00.38 Elapsed: 00:00:00.27
# Mc/sec: 806.60
//
Query:       MMETSP1137-20121227|9494_1  [L=948]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (948 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       134  (0.032667); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.55u 0.16s 00:00:00.71 Elapsed: 00:00:00.56
# Mc/sec: 2195.19
//
Query:       MMETSP1137-20121227|9495_1  [L=1002]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1002 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       112  (0.0273038); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.58u 0.17s 00:00:00.75 Elapsed: 00:00:00.59
# Mc/sec: 2241.58
//
Query:       MMETSP1137-20121227|9496_1  [L=295]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.9e-89  295.4   0.0    5.8e-89  295.2   0.0    1.1  1  TIGR01169 rplA_bact: ribosomal protein L1
    1.6e-23   80.9   0.0    2.3e-23   80.4   0.0    1.3  1  TIGR01170 rplA_mito: ribosomal protein L1, mitochondrial


Domain annotation for each model (and alignments):
>> TIGR01169  rplA_bact: ribosomal protein L1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  295.2   0.0   2.8e-92   5.8e-89       2     225 ..      60     283 ..      59     285 .. 0.98

  Alignments for each domain:
  == domain 1    score: 295.2 bits;  conditional E-value: 2.8e-92
   TIGR01169   2 kskrlkeiaekvdknklysleeaiellkelstakfdetvevaiklgvdprksdqqvRgsvvLPngtgksvrvlvfakgekaeeAkeaGAdlvGsedliekikkgeldfDvviatpdmmkkvgklgkvLGprgLmPnpktgtvtadvakavkelkkGkvefradkagiihvsigkvsfeeeklkenlealleaikkakPsaaKgkylkkialsstmgpgikvdls 225
                  s r   + ++v+k++ly+  eai+l+k+l+ akf et e++ +l++dp+++dqq+R++v+LP+gtgk+vrv+v+a+g  a++A+eaGAdlvG++dlie i kgeldfDv++atp +m+k++klgkvLGp+gLmP+pk gtv++  a+avke+k+Gk+efr dk+gi+hv++gk +f ee+l+ nl a+ ++i+k++Ps+ Kgk + +++lsstmgp+ik+d+s
  MMETSP1137-20121227|9496_1  60 VSARKALLDKEVEKERLYEPAEAITLMKSLANAKFVETAELHGNLNIDPKYNDQQIRTTVTLPHGTGKTVRVAVLAEGPAADAAREAGADLVGMADLIETISKGELDFDVLLATPPAMPKLAKLGKVLGPKGLMPSPKAGTVSTSPADAVKEFKAGKLEFRCDKQGIVHVPLGKCDFTEEALQGNLAAVAQTIEKNRPSGCKGKLWISATLSSTMGPAIKLDVS 283
                 5667778899*******************************************************************************************************************************************************************************************************************987 PP

>> TIGR01170  rplA_mito: ribosomal protein L1, mitochondrial
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.4   0.0   1.1e-26   2.3e-23       5     140 .]      81     215 ..      77     215 .. 0.82

  Alignments for each domain:
  == domain 1    score: 80.4 bits;  conditional E-value: 1.1e-26
   TIGR01170   5 kavkylkeasislvspkqsvnldielkmelgkesvqgvlslPkpfakeikiavFtkgaseveearek.aslvGgedLikkIkdgeiklfdyvialpdiveeLaklaklLgkkgllPsvkrgtvsddlaslieklkkG 140
                 +a+ + k+      +  ++++ +++++ + + ++++ +++lP+  +k  ++av ++g +++ +  e+ a+lvG +dLi+ I +ge+  fd ++a+p  +++Lakl k+Lg+kgl+Ps+k gtvs+  a+ ++++k G
  MMETSP1137-20121227|9496_1  81 EAITLMKSLANAKFVETAELHGNLNIDPKYNDQQIRTTVTLPHGTGKTVRVAVLAEGPAADAAR-EAgADLVGMADLIETISKGELD-FDVLLATPPAMPKLAKLGKVLGPKGLMPSPKAGTVSTSPADAVKEFKAG 215
                 56666666666633444444444444444445556788*******************9998766.555*******************.8************************************999999999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (295 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       107  (0.0260848); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.25u 0.18s 00:00:00.43 Elapsed: 00:00:00.28
# Mc/sec: 1390.60
//
Query:       MMETSP1137-20121227|9497_1  [L=396]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (396 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       111  (0.02706); expected 82.0 (0.02)
Passed bias filter:                      100  (0.0243784); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.13s 00:00:00.42 Elapsed: 00:00:00.42
# Mc/sec: 1244.47
//
Query:       MMETSP1137-20121227|9498_1  [L=105]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (105 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        28  (0.00682594); expected 82.0 (0.02)
Passed bias filter:                       27  (0.00658216); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.14s 00:00:00.26 Elapsed: 00:00:00.27
# Mc/sec: 513.29
//
Query:       MMETSP1137-20121227|9499_1  [L=522]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0017   14.0  48.9    0.00083   15.0  16.0    2.0  2  TIGR02168 SMC_prok_B: chromosome segregation protein SMC
  ------ inclusion threshold ------
       0.54    5.6  45.9       0.86    5.0  19.4    2.1  2  TIGR02169 SMC_prok_A: chromosome segregation protein SMC


Domain annotation for each model (and alignments):
>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0  16.0     4e-07   0.00083     237     497 ..      71     322 ..      59     329 .. 0.79
   2 ?   -2.3  20.8     0.069   1.4e+02     816     989 ..     299     477 ..     265     483 .. 0.29

  Alignments for each domain:
  == domain 1    score: 15.0 bits;  conditional E-value: 4e-07
   TIGR02168 237 lkeeleeleeelkeaeeeleeleaelkeleeeleelrlekseleeeleelqkelqelkaeisrleqeieilkerleqlekeleeleeqleeleskkeeleeelaeleeeleelkeelesleaeleeaeaeleelesrleeleeeleelrsevaeleeqlaslnaelerleaeleqleerrerlkqeieelekkleeaeaelkelqeeleeleeeleeleeelerleealeeleeeleeaeqalqkaeeelaqlqarlesle 497
                  +++le+  ++l+++ ++++++++el++l+ ++e + l +se   + ++++k+ ++++  +++ e+ +++++er ++++++ + l  +le++e +++e++++l++ e+ +++l++  +++e el+++   l++  ++ +++ +e ++  +++a+l ++++sl+  l+ + ++l++l+++ + l ++      ++ +a  elke+++e + + ++ +++e+e     ea     ++l +ae+al++a   +++++a+++s++
  MMETSP1137-20121227|9499_1  71 SDNKLEQKLMSLQNVLDQVAAHSEELQRLTISMEAV-LGVSETVPTPTKYNKDAKDINDVMKNAESLVKVTQERGSKASQTAQVLCSKLEQKEVSEKEARNSLKQTEATIKSLRAHTNAVETELARL--RLAAYVDSCKSA-DERTANDRKLASLVKEQSSLSDVLSDAGDKLSKLTSMSNSLASTLGWVV-AAAAAPVELKETAREAAARAAQRATAEAESM--PEAIDL--QSLLAAEEALTSAATAIQSVAAEAQSVQ 322
                 568899999999999999**********99999765.778888899999*****************************************************************************5..455555555554.556677889999*************************988888886663.4444666666666666665555554444332..222222..2344466666666666666666666655 PP

  == domain 2    score: -2.3 bits;  conditional E-value: 0.069
   TIGR02168 816 elkeeaaekeerleslekeiaalekeleeleeqieeleeeiesleaeieeleeeleeleeeleellkekasleealaelreeleelseelrelekkvkelereleelreklaq.....lelrleeleveiaelqerlseeyeleleeaeeleek..veeeeeeaeeelkrleekikeLGpV 989
                 + +e++++++++++s+ +e+++++     +  +  ++   + s+e+++++lee+l+++++++ e+ +ek  +eea+++++ + e  +++++e+ kkvke  + ++ +++k+++     +e+ +e++e  +++++e+++e +  e+++ e + ++   e++  e+e++  +  +k + +G V
  MMETSP1137-20121227|9499_1 299 AAEEALTSAATAIQSVAAEAQSVQGVRLATPPAEMKTDMVVGSVEEKMKDLEEALNAAQTKAVEAVDEK--VEEAVHKVEVAEEMIEKKVEEAVKKVKEVMETTTXAEHKVEDtvedkVEEVVEKAEEVVEQVAEKVEEAVTPEAKAPEPEAKApePEAKAPELEAKAPEPAAKQEVIGVV 477
                 111111111222222222222222111111111112222223344444444444443333333333333..33444444444344444444444444443333333333333210000223333333333333333333333333333333222222333344555555555555555555 PP

>> TIGR02169  SMC_prok_A: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1  13.4   0.00074       1.5     275     469 ..      82     257 ..      66     324 .. 0.32
   2 ?    5.0  19.4   0.00042      0.86     672     913 ..     213     464 ..     201     476 .. 0.49

  Alignments for each domain:
  == domain 1    score: 4.1 bits;  conditional E-value: 0.00074
   TIGR02169 275 leelnkkieklgeeeqlavkekleelkaeiekleraiaekeeeledaeer..lakaeaeidklkeeieelereieeekkereklkeelkelkeeleelraeleevdkeaaelreelkelkekleklkeelnelkreldrll.....eelkrleeelaelkaelerieekiaeleeeleelaeeikkaeqkleqlkedlekae 469
                 l+++  ++ +                         + +e ++    +e+   + ++     k+++++++++  +++ +   +  +e+ +++ ++ + l ++le+++ + +e+r+ lk+ +  + +l+ + n +++el rl      +  k ++ e+     +l+++ +++  l + l ++ ++++k +   ++l+  l  + 
  MMETSP1137-20121227|9499_1  82 LQNVLDQVAA-------------------------HSEELQRLTISMEAVlgVSETVPTPTKYNKDAKDINDVMKNAESLVKVTQERGSKASQTAQVLCSKLEQKEVSEKEARNSLKQTEATIKSLRAHTNAVETELARLRlaayvDSCKSAD-ERTANDRKLASLVKEQSSLSDVLSDAGDKLSKLTSMSNSLASTLGWVV 257
                 2222222222.........................2222222222222210012222222333333333333333333333333344444444444444444444444444444444444444444444444444444432111111111111.111122233333333333333333333333333333333333322221 PP

  == domain 2    score: 5.0 bits;  conditional E-value: 0.00042
   TIGR02169 672 sekeklerlrerleeLereleslqselrriekrldelsskl....sdaekkieeiekeleqleeeeeklkerleeleeklseleeeleekkeelkeleaeieeleeklaklke.aledleaelse.ekieeieeelekleeev.....sriearleeieaelnklelekelleeeiqelqeeieeleeqkkeiekeiee.lkakleeleeeleeleaavreLeeelkdLkkereeleaelrelekkkeeleaei 913
                 ++  kl++l ++  +L + l+++ ++l+++ + +++l s l     +a + +e +e  +e++++ ++++ +++e + e ++   + l +++e l++ +  i++  ++++ ++   l+   ae++    +  +ee++++lee +     + +ea+ e++e++++k e+ +e+ e++++e++++++e+ e     e+++e+  + k+ee+ e++ee   +v+e  ee    +++  e ea+  e e k  elea++
  MMETSP1137-20121227|9499_1 213 ANDRKLASLVKEQSSLSDVLSDAGDKLSKLTSMSNSLASTLgwvvAAAAAPVELKETAREAAARAAQRATAEAESMPEAIDL--QSLLAAEEALTSAATAIQSVAAEAQSVQGvRLATPPAEMKTdMVVGSVEEKMKDLEEALnaaqtKAVEAVDEKVEEAVHKVEVAEEMIEKKVEEAVKKVKEVMETTTXAEHKVEDtVEDKVEEVVEKAEEVVEQVAEKVEEAVTPEAKAPEPEAKAPEPEAKAPELEAKA 464
                 4455666666666666666666666666666666666555411113444445555555555555555555555555554442..33444444445555555554444444442134443333332033445555555555543100002333333445555555666666666666666666666666655555555441345555555555555555555555555555555555555555555555555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (522 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                      1036  (0.25256); expected 82.0 (0.02)
Passed bias filter:                      111  (0.02706); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.63u 0.16s 00:00:00.79 Elapsed: 00:00:00.56
# Mc/sec: 1208.74
//
Query:       MMETSP1137-20121227|9500_1  [L=102]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (102 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        39  (0.00950756); expected 82.0 (0.02)
Passed bias filter:                       34  (0.00828864); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.15s 00:00:00.29 Elapsed: 00:00:00.37
# Mc/sec: 363.86
//
Query:       MMETSP1137-20121227|9501_1  [L=314]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      1e-21   74.6   3.8    6.4e-09   32.3   0.0    3.8  3  TIGR00198 cat_per_HPI: catalase/peroxidase HPI


Domain annotation for each model (and alignments):
>> TIGR00198  cat_per_HPI: catalase/peroxidase HPI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.3   0.0   1.6e-12   6.4e-09      80     171 ..      66     162 ..      61     174 .. 0.85
   2 !   11.1   0.0     4e-06     0.016     224     257 ..     181     213 ..     170     216 .. 0.85
   3 !   29.0   0.5   1.5e-11   6.3e-08     296     397 ..     217     304 ..     214     310 .. 0.91

  Alignments for each domain:
  == domain 1    score: 32.3 bits;  conditional E-value: 1.6e-12
   TIGR00198  80 ggllirlawhaagtyriidgrggaadgsqrfap..lnswpdnvnl.dkarrllwpikkkygr..klswadliilagtvaledmglkvfgfaagredi 171
                 g++l+rl+wh ag y +    gg  +  +rf+     ++  n  l d a+ ll pi +ky     +s adl  la +va+++mg        gr d 
  MMETSP1137-20121227|9501_1  66 GPILVRLSWHDAGVYSTGKLTGGCPNAVMRFTDggEGTFGANAGLpDVAVGLLEPISEKYVAngDISNADLWTLAANVAIKEMGGPEIPTRFGRTDA 162
                 899****************************97225679999999789************75236******************97776666666665 PP

  == domain 2    score: 11.1 bits;  conditional E-value: 4e-06
   TIGR00198 224 saaqeirvtfarmgmndeetvaliagghtlgkch 257
                    +++r  f   g+nd++ val +g ht+gkch
  MMETSP1137-20121227|9501_1 181 KGIDHLREIFHPKGFNDKDIVAL-SGAHTVGKCH 213
                 55678999**************8.79******** PP

  == domain 3    score: 29.0 bits;  conditional E-value: 1.5e-11
   TIGR00198 296 sglevvwtttptkfdnnyleilfkyewelkkspagaiqfeavdakeiikdaedpnkkrkpimlvadlalrfdpefekisrrfleepeefeeafakawfklth 397
                 sg+e++wt++p kfdn+y++ +++ ++e + + ag+ q                n     iml +dlal  d  f+   +++  + +++   f+ aw kl  
  MMETSP1137-20121227|9501_1 217 SGFEGAWTEEPLKFDNTYFKEMLSKKYESETTSAGNPQNR--------------NAETGTIMLISDLALLEDDAFKTHVEKYASDQDAYFADFTSAWVKLQE 304
                 9**********************************87744..............4456679**************************************975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (314 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       122  (0.0297416); expected 82.0 (0.02)
Passed bias filter:                      108  (0.0263286); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.28u 0.15s 00:00:00.43 Elapsed: 00:00:00.48
# Mc/sec: 863.43
//
Query:       MMETSP1137-20121227|9503_1  [L=415]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0013   15.3   0.0     0.0024   14.4   0.0    1.4  1  TIGR00990 3a0801s09: mitochondrial precursor proteins import receptor
  ------ inclusion threshold ------
          2    5.4  12.3        3.7    4.5   8.5    1.5  1  TIGR00601 rad23: UV excision repair protein Rad23


Domain annotation for each model (and alignments):
>> TIGR00990  3a0801s09: mitochondrial precursor proteins import receptor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.0   1.2e-06    0.0024     131     208 ..     318     403 ..     296     412 .. 0.79

  Alignments for each domain:
  == domain 1    score: 14.4 bits;  conditional E-value: 1.2e-06
   TIGR00990 131 kekGnkayrnkdfdkaielyskall..lkedP......vyysnraacynaladlekvvedttaaleldpdyvkalnrranaydqlg 208
                 + +Gn  ++  d+  a + y++al   l   P      v  +nraacy  + +    + d+  +++ldp y k   r a+a +  g
  MMETSP1137-20121227|9503_1 318 QRRGNARFGAGDWGGAADAYTQALHeaLATSPpkalsaVILANRAACYLNMQQGGLALRDAQLSVALDPSYAKGHYRLAKALELCG 403
                 4579****************999853333333344555999**************************************9998766 PP

>> TIGR00601  rad23: UV excision repair protein Rad23
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   8.5    0.0018       3.7      89     145 ..       7      65 ..       2     120 .. 0.51

  Alignments for each domain:
  == domain 1    score: 4.5 bits;  conditional E-value: 0.0018
   TIGR00601  89 atpesaptptpsatpasvaekk.saaPasaveeessaeeeatatale.sedtsaesegd 145
                 ++p++ap+++  +  as+++++ +aaP++a++    a+ +a+a++ + s  +sa+++++
  MMETSP1137-20121227|9503_1   7 SAPTAAPATAAHNATASTTADPtAAAPTAAASTVAAATVAAAAATAQpSRVASATAAAH 65 
                 33444444443222222222220223333222222222222221111011222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (415 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       299  (0.0728913); expected 82.0 (0.02)
Passed bias filter:                       98  (0.0238908); expected 82.0 (0.02)
Passed Vit filter:                        19  (0.00463189); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.34u 0.18s 00:00:00.52 Elapsed: 00:00:00.55
# Mc/sec: 995.92
//
Query:       MMETSP1137-20121227|9504_1  [L=507]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (507 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       144  (0.0351048); expected 82.0 (0.02)
Passed bias filter:                      102  (0.0248659); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.16s 00:00:00.52 Elapsed: 00:00:00.40
# Mc/sec: 1672.96
//
Query:       MMETSP1137-20121227|9506_1  [L=74]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (74 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        52  (0.0126767); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.10s 00:00:00.23 Elapsed: 00:00:00.44
# Mc/sec: 221.98
//
Query:       MMETSP1137-20121227|9507_1  [L=211]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (211 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        67  (0.0163335); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.15s 00:00:00.34 Elapsed: 00:00:00.48
# Mc/sec: 580.20
//
Query:       MMETSP1137-20121227|9508_1  [L=454]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   1.9e-128  426.8   0.0   2.3e-128  426.5   0.0    1.0  1  TIGR01064 pyruv_kin: pyruvate kinase


Domain annotation for each model (and alignments):
>> TIGR01064  pyruv_kin: pyruvate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  426.5   0.0  5.6e-132  2.3e-128      29     442 ..       2     427 ..       1     447 [. 0.87

  Alignments for each domain:
  == domain 1    score: 426.5 bits;  conditional E-value: 5.6e-132
   TIGR01064  29 vvRlNfSHgsheehkkvienvrevaeklgkpvaillDtkGpeiRvgeikk........eevklkkgekvilttdek.keegseekvsvdykslvkdvkeGdkilvdDGkislkVveveedk..vivevknggelkskkgvnlpgaevslpalsekDkkdlkfgveqgvdlvaaSFvrkaedvkevrevleekgakdvk.........iiaKiEnqegvknideIikasdgimvARGDLGveipaeevpllQkklikkcreagkpvitATqmLdSmiknprPTRAEvsDvanAvldGtdavMLSgEtakGkYPveaVkvmakiakeaekalekktelkerknskakkssieeavalaaveaaekakakaivvltes.grtarllskyrpkapiiavtrnervarqlalsrGvfpvlvdeeeeelekalkkalellk 442
                 v+R+NfSH++ ee + + +n+r ++   g+ v i+lDtkGpe+R+g +k         ++v +k ge+++l td + + +++e++v+v y+ l++++++G+++l+dDG++ l V++v+ d+  v +e+ n  e+ ++kgvnlpg+  +lpalsekD++d++fg+e+++d++aaSFvr+ae v+e+re++++  ++ +          ii+KiE+ e+++n+++Ii asdg+mvARGDLGve+p+e+v+++Qk+++++c  agkpvi+ATqmL+Sm++nprPTRAEv Dv nAvl+ +davMLSgE+a+Gk+P  aV+++a+i   +e+  +++ +l ++      ++   e  a aa+ +a++a+a+ai+v+ e  g+t r++s yrp +p++a++++ +v+rql l+rGv p+l++  ++el++ +  a+e+++
  MMETSP1137-20121227|9508_1   2 VMRVNFSHATPEEFHLRRDNLRGTE--GGELVPIMLDTKGPELRMGGLKVcketgnrkAKVLMKAGEELLLVTDXAyDGASDEKTVYVGYPPLAQKLHVGARVLLDDGLVMLSVKQVRPDDnaVLCEILNTSEIGERKGVNLPGIVTDLPALSEKDREDIRFGIEHDIDMIAASFVRSAEGVREIREYVQHCHERYCMtpdltpaplIISKIESVEALDNLQDIIDASDGVMVARGDLGVEVPLEQVVTWQKEMVRMCAAAGKPVIVATQMLESMQHNPRPTRAEVADVTNAVLEQADAVMLSGESANGKFPDSAVAMQASIVAWTESWSRTQPFLAST-----PQEVACEPFASAACVLAQEASADAILVFEEGfGETTRAVSAYRPPVPVLALSPSLKVCRQLSLHRGVHPILLETDTNELDAEA--AVEVAA 427
                 99********************965..899**************9876533223334467889************99999*************************************987778******************************************************************998765442223334445**************************************************************************************************************************7755555553.....344455566677777777777888888877549***************************************87776654433..333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (454 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       105  (0.0255973); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.16s 00:00:00.50 Elapsed: 00:00:00.37
# Mc/sec: 1619.54
//
Query:       MMETSP1137-20121227|9509_1  [L=456]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (456 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       307  (0.0748415); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.16s 00:00:00.51 Elapsed: 00:00:00.35
# Mc/sec: 1719.63
//
Query:       MMETSP1137-20121227|9510_1  [L=552]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0059   14.0   0.0      0.013   12.8   0.0    1.5  1  TIGR01198 pgl: 6-phosphogluconolactonase


Domain annotation for each model (and alignments):
>> TIGR01198  pgl: 6-phosphogluconolactonase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.8   0.0   3.2e-06     0.013      32      82 ..     250     300 ..     236     324 .. 0.79

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 3.2e-06
   TIGR01198  32 lalsGGrspialleaLaaqkldWsrihlflgDERivplddadsntkllrea 82 
                 +   G  +p  ++  L a+++dW  ++  + DE  ++++ ads + ++ +a
  MMETSP1137-20121227|9510_1 250 VPYVGSATPAVIADGLLASDIDWTALQRAWQDEKAIEKSKADSSVPKCVQA 300
                 334677889999999****************************98766655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (552 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        81  (0.0197465); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.19s 00:00:00.56 Elapsed: 00:00:00.54
# Mc/sec: 1349.22
//
Query:       MMETSP1137-20121227|9512_1  [L=126]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (126 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       176  (0.0429059); expected 82.0 (0.02)
Passed bias filter:                      116  (0.0282789); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.12s 00:00:00.30 Elapsed: 00:00:00.28
# Mc/sec: 573.47
//
Query:       MMETSP1137-20121227|9513_1  [L=760]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   2.1e-219  727.3   0.0   2.4e-219  727.1   0.0    1.0  1  TIGR02042 sir: sulfite reductase, ferredoxin dependent
     1e-134  447.8   0.0   3.5e-133  442.7   0.0    2.0  1  TIGR02041 CysI: sulfite reductase (NADPH) hemoprotein, beta-component
    1.6e-22   77.9   0.0    2.7e-16   57.3   0.0    2.3  2  TIGR02435 CobG: precorrin-3B synthase
    9.6e-10   35.8   0.0    2.2e-06   24.7   0.0    2.5  2  TIGR02912 sulfite_red_C: sulfite reductase, subunit C
    6.1e-06   23.1   0.0      0.016   11.9   0.0    3.0  4  TIGR02064 dsrA: sulfite reductase, dissimilatory-type alpha subunit
      4e-05   20.6   0.0       0.14    8.9   0.0    3.5  4  TIGR02066 dsrB: sulfite reductase, dissimilatory-type beta subunit
    0.00028   17.2   0.0       0.37    6.9   0.0    3.0  3  TIGR02374 nitri_red_nirB: nitrite reductase [NAD(P)H], large subunit


Domain annotation for each model (and alignments):
>> TIGR02042  sir: sulfite reductase, ferredoxin dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  727.1   0.0  4.1e-222  2.4e-219       2     581 .]     110     701 ..     109     701 .. 0.95

  Alignments for each domain:
  == domain 1    score: 727.1 bits;  conditional E-value: 4.1e-222
   TIGR02042   2 kpetverkrskveilkeksnflreplaeelleeatnlnedavqllkfhgsyqqdnrdergkg.qekdysfmlrtknpggkvpnqlyltlddladeygigtlrlttrqafqlhgvlkknlktvistivknlgs.tlgacgdlnrnvlapaapfkkkaeyefaketadniadllspqsgayyelwldgekvlsae......pdpevvkarr.dnskgtnvadseeplygtqylprkfkvavtvptdnsvdlftqdiglvvvsdekg.elegfniyvggglgrthrkeetfarladplgyvpkedilaavkaivvtqrdygdrddrryarlkylisdwgiekfrevveeyfgkkiapvrelpefkykdylgwheqgdgklflglsvdsgrvkdegafqlkkalrevvekykldvrltpnqniilydikpedkraittvlaqagllqpeavdplnrtamacpalplcglaiteaeraipgilkrvrallekvglkdesvvvrltgcpngcarpymaelglvgdapnsyqvwlggspnqtr...larsfvdklkdedlekvleplfvyfkkkrqs.kesfgdftdrvgfdklrefveey 581
                 kp t +  +  v+i+k+ sn lr+pl +++ +e   +n+d++ +lk hgsy+q+nrd + k+ +ek+y+fmlr+k p g+vp  l+  lddl+++yg+g lr+ttrqafqlhgvlk +lk visti  n+gs t g cgd+nrnv+ pa  f +++ y +a+++++ iadl+ p s a+ e+wldgek+ + e      ++ ++ + r+ dn++g +    +ep+yg  ylp+kfk+a tvp+dnsvdl+ +dig vvv + +g  l+gfni vggg+grthrke+tfar ad lg+v k+d + a+kai++tqrd+g+r+ r  arlkyl++  gi+kfr+ ve+y+gk+++p   lpe+ky d++gwheqgdgkl+lg++v++grv+d  +++lk++lr +v++y +d++ltp+q i+l +i p++k  +++vl++ g++  + +d+++r ++acp++plcgla++eaer  p+i  r+ a l ++g+ ++++v r tgcpngcarpymae+++vg++pnsyq+wlggspnq++   +a + + k+  +dle+++ep+f  +k +r++ +e++gdf++rvg dk++ef+++y
  MMETSP1137-20121227|9513_1 110 KPWTNTLTQEDVQIVKAASNDLRDPLISDMANEEIYVNKDTIHILKHHGSYMQQNRDLKKKAeREKSYQFMLRLKVPCGEVPAALFRELDDLSNKYGQGDLRATTRQAFQLHGVLKGDLKKVISTIA-NVGShTYGGCGDINRNVMVPAVHFPNNPAYVYAQKYSKAIADLFKPMSNAFNEIWLDGEKAATVEywqkdiEEFNLDEVRNyDNGNGIITGHPVEPIYGRTYLPKKFKIAFTVPGDNSVDLYINDIGCVVVMEPDGvTLKGFNIVVGGGMGRTHRKESTFARAADHLGFVKKDDFFEAMKAIIATQRDHGNREVRASARLKYLVHTLGIDKFRSLVEKYHGKPFEPWVPLPEWKYLDWMGWHEQGDGKLMLGVNVEQGRVRDTPELRLKTCLRTLVDNYGVDLLLTPSQSIVLRNIDPAHKYNVEAVLREHGVKLIHEIDAITRKSIACPSFPLCGLAMAEAERVQPQINARLNAKLREMGMANDEFVTRTTGCPNGCARPYMAEIAFVGSGPNSYQLWLGGSPNQAErtgMA-TSIFKMPLTDLEQTVEPIFAMWKSQRNApDEALGDFCHRVGVDKVEEFMQSY 701
                 56677778899**********************************************98886379***********************************************************985.6776599********************************************************984433223345667776689***9999**************************************9999998569**************************************************************************************************************************************************************************************************************************************************************************97511144.45669999******************98579******************998 PP

>> TIGR02041  CysI: sulfite reductase (NADPH) hemoprotein, beta-component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  442.7   0.0    6e-136  3.5e-133       3     540 ..     124     691 ..     122     691 .. 0.92

  Alignments for each domain:
  == domain 1    score: 442.7 bits;  conditional E-value: 6e-136
   TIGR02041   3 ikeesnylrGtlkedlkdeltgglkeddfqlikfhGlyqqddrdlreeraeqklepayalllrvrlpGGvitpkqwlkldklarkyangslrlttrqtfqfhGilkkelkkvikalhsvlldslaaagdvnrnvlctsnpl.eselhrevyewakkisehllprtrayaeiwldekkvagaee...........................eepilGktylprkfkiavavpplndvdvyandlgfvaiae..deklvGfnvliGGglslehGdkktyprlakvlGfveleellavaeavvttqrdfGnrtdrknarlkytierlGldalkaeverragiklepvrpykfterGdrigwvkgidgrwhltlfiesGrivdeedkklltGlreiakihkGdfritanqnliiaevsekekakieklakkyGlidg.kvtalrknslacvalptcplamaeaerylpdfiakldkilekyGladeeivlrvtGcpnGcarallaeiglvGkapGrynlylGgdregs.r...lnklykeniteeeilaeldellgryakerk.egeefGdfviragi 540
                 +k+ sn lr  l  d+++e    +++d  +++k+hG+y q +rdl+++ ++   e  y+++lr ++p G + ++ + +ld+l++ky++g lr ttrq+fq+hG+lk +lkkvi ++ +v+  + +++gd+nrnv++ +  + +  ++  + +++k i++ + p + a++eiwld++k a+ e                            +epi+G+tylp+kfkia++vp  n vd+y nd+g v ++e  + +l Gfn+++GGg++++h +++t++r a+ lGfv++++ +++ +a+++tqrd+Gnr +r+ arlky ++ lG+d++++ ve+  g  +ep  p+   +  d +gw ++ dg+  l + +e+Gr+ d+++ +l+t lr +      d+ +t+ q +++ ++ + +k ++e++ +++G+    +  a+ ++s+ac ++p c+lamaeaer+ p+++a+l+  l++ G+a++e v+r tGcpnGcar+++aei++vG +p  y l+lGg  ++  r    + ++k  +t+  + ++++ ++  ++ +r+ ++e +Gdf +r g+
  MMETSP1137-20121227|9513_1 124 VKAASNDLRDPLISDMANEEI-YVNKDTIHILKHHGSYMQQNRDLKKKAER---EKSYQFMLRLKVPCGEVPAALFRELDDLSNKYGQGDLRATTRQAFQLHGVLKGDLKKVISTIANVGSHTYGGCGDINRNVMVPAVHFpNNPAYVYAQKYSKAIADLFKPMSNAFNEIWLDGEKAATVEYwqkdieefnldevrnydngngiitghpVEPIYGRTYLPKKFKIAFTVPGDNSVDLYINDIGCVVVMEpdGVTLKGFNIVVGGGMGRTHRKESTFARAADHLGFVKKDDFFEAMKAIIATQRDHGNREVRASARLKYLVHTLGIDKFRSLVEKYHGKPFEPWVPLPEWKYLDWMGWHEQGDGKLMLGVNVEQGRVRDTPELRLKTCLRTLVDNYGVDLLLTPSQSIVLRNIDPAHKYNVEAVLREHGVKLIhEIDAITRKSIACPSFPLCGLAMAEAERVQPQINARLNAKLREMGMANDEFVTRTTGCPNGCARPYMAEIAFVGSGPNSYQLWLGGSPNQAeRtgmATSIFKMPLTD--LEQTVEPIFAMWKSQRNaPDEALGDFCHRVGV 691
                 7999************99865.689999*****************876555...679*******************************************************************************88765134466677788999***********************9664555677899999*****************************************************995345899****************************************************************************************************************************************************************************7655378899*******************************************************************************9754431311134577766665..558999*******999835899*******885 PP

>> TIGR02435  CobG: precorrin-3B synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.0   3.6e-07   0.00021      19      97 ..     180     259 ..     175     308 .. 0.88
   2 !   57.3   0.0   4.6e-19   2.7e-16     127     385 ..     339     628 ..     335     631 .. 0.83

  Alignments for each domain:
  == domain 1    score: 18.2 bits;  conditional E-value: 3.6e-07
   TIGR02435  19 lvRvrlvggiLtsaqvigLAelAerlgngiievtaRanlQlRgla.adadalseallaagllaagaaadevrnvevspla 97 
                 + R++++ g + +a    L +l +++g+g + +t+R   Ql g+  +d +++++++++ g    g   d  rnv+v+++ 
  MMETSP1137-20121227|9513_1 180 MLRLKVPCGEVPAALFRELDDLSNKYGQGDLRATTRQAFQLHGVLkGDLKKVISTIANVGSHTYGGCGDINRNVMVPAVH 259
                 89******************************************999****************************99875 PP

  == domain 2    score: 57.3 bits;  conditional E-value: 4.6e-19
   TIGR02435 127 LgpkfsvalDgGgrltllevtaDvrlkalkegdgva...lalslaG...astsarll........vavapdaavevlvavlrvfvekgr.....aarlrdlldeelvdealeevelkllpeaaegeakreavaaaaplGlhpqadagvtlGvglalGrltaaqlaelaelaqalGdg...elrLtpwralLvlgvpeeraaaaqaalaalGlv.isasdpra.riaACtGapgCasaladtkadAealaaeleetvd........ltvHlsGCaksCAapgpaaltLvaae 385
                 L++kf++a+   g+  ++   +D+   ++ e dgv+   + + ++G   +++++++         + v++d+  e++ a++ +  ++g+      arl++l +  ++d+++  v  k   ++ e  ++ +  +    +G+h q+d++ +lGv +  Gr+       l  + ++l d+   +l Ltp +++ + ++ +++  +++a+l  +G   i++ d+ + + +AC+  p C  a+a+   +  ++ a+l+++++        +    +GC ++CA+p +a++  v+ +
  MMETSP1137-20121227|9513_1 339 LPKKFKIAFTVPGDNSVDLYINDIGCVVVMEPDGVTlkgFNIVVGGgmgRTHRKESTfaraadhlGFVKKDDFFEAMKAIIATQRDHGNrevraSARLKYLVHTLGIDKFRSLV-EKYHGKPFEPWVPLPEWKYLDWMGWHEQGDGKLMLGVNVEQGRVRDTPELRLKTCLRTLVDNygvDLLLTPSQSIVLRNIDPAHKYNVEAVLREHGVKlIHEIDAITrKSIACPSFPLCGLAMAEAERVQPQINARLNAKLRemgmandeFVTRTTGCPNGCARPYMAEIAFVGSG 628
                 889999999998899999999999999999999887222345555422133333333667777779**********************9999999*****************97.77788888887788888888899*********************8776666666666666654449******************************752455565551689*****************999999999999999999999888999******************976 PP

>> TIGR02912  sulfite_red_C: sulfite reductase, subunit C
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.7   0.0   3.7e-09   2.2e-06      19      77 ..     177     235 ..     162     240 .. 0.86
   2 !    8.3   0.0   0.00037      0.22     121     166 ..     588     632 ..     482     636 .. 0.65

  Alignments for each domain:
  == domain 1    score: 24.7 bits;  conditional E-value: 3.7e-09
   TIGR02912  19 gktairvrvpggileakylsllrdiaetygngkvhittrqgleipgikfedidevnkll 77 
                  + ++r++vp g ++a ++  l d++++yg+g++  ttrq +++ g+   d+++v   +
  MMETSP1137-20121227|9513_1 177 YQFMLRLKVPCGEVPAALFRELDDLSNKYGQGDLRATTRQAFQLHGVLKGDLKKVISTI 235
                 45699******************************************999999987665 PP

  == domain 2    score: 8.3 bits;  conditional E-value: 0.00037
   TIGR02912 121 klakriekavfpsdyhlkialtgcpndcikarmadlgilgvtepry 166
                 +l  ++  + + +d  + +  tgcpn c++  ma++  +g     y
  MMETSP1137-20121227|9513_1 588 RLNAKLREMGMANDE-FVTRTTGCPNGCARPYMAEIAFVGSGPNSY 632
                 333444444444554.446789***************999776666 PP

>> TIGR02064  dsrA: sulfite reductase, dissimilatory-type alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.9   0.0   2.7e-05     0.016      22     157 ..     117     253 ..     101     257 .. 0.83
   2 ?   -2.3   0.0      0.56   3.3e+02     295     364 ..     378     450 ..     374     457 .. 0.74
   3 !    7.4   0.0   0.00061      0.36     123     222 ..     527     627 ..     477     633 .. 0.75
   4 ?   -2.6   0.0      0.67   3.9e+02     325     362 ..     656     694 ..     642     702 .. 0.74

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 2.7e-05
   TIGR02064  22 lledvkvpad.aedllgvlelsyeerkthWkggivsvvgygGgviarysdlgekvPkveefh.tvrvaqpsGkfystkylrqlidvwekyGsGlvelhGstGdivllgtstevleeifeelrelgtd.lGGsGsalrta 157
                 ++edv++ +  ++dl + l   + +++ + +  ++++ ++ G  + +  dl +k  + + ++  +r++ p G+  +++++r+l d+ +kyG G +    +  +  l g+ +  l++++  + ++g    GG G+  r++
  MMETSP1137-20121227|9513_1 117 TQEDVQIVKAaSNDLRDPLISDMANEEIYVNKDTIHILKHHGSYMQQNRDLKKKAEREKSYQfMLRLKVPCGE-VPAALFRELDDLSNKYGQGDLRATTR-QAFQLHGVLKGDLKKVISTIANVGSHtYGGCGDINRNV 253
                 4569998877588999999999999999999*******************99999877766416799999998.6999***************7665433.467899****************9865279999988875 PP

  == domain 2    score: -2.3 bits;  conditional E-value: 0.56
   TIGR02064 295 vtiliGgk..aklkeGaklGslvvpfk.veaeeeydeivelvekiidfWdeegkereriGelikrlglakfle 364
                   i++Gg+  ++ ++ +++   +  +  v+ ++ ++ ++ ++ +  d+ ++e ++  r+  l++ lg+ kf  
  MMETSP1137-20121227|9513_1 378 FNIVVGGGmgRTHRKESTFARAADHLGfVKKDDFFEAMKAIIATQRDHGNREVRASARLKYLVHTLGIDKFRS 450
                 5566666422455666666666666655778888999999999999999999999999999999999998855 PP

  == domain 3    score: 7.4 bits;  conditional E-value: 0.00061
   TIGR02064 123 ivllgtstevleeifeelrelgtdlGGsGsal.rtaesCvGkalCefacydtlkafteltkeyqdelhrPaf.PykfkikvsgCPndCvaaiarsdfaviGt 222
                 ivl   +  +  ++   lre g+ l    +a+ r+  +C    lC +a+ +  ++  ++   ++ +l   ++    f  + +gCPn+C +    +++a++G 
  MMETSP1137-20121227|9513_1 527 IVLRNIDPAHKYNVEAVLREHGVKLIHEIDAItRKSIACPSFPLCGLAMAEAERVQPQINARLNAKLREMGMaNDEFVTRTTGCPNGCARPY-MAEIAFVGS 627
                 5555555555555555555666666555555438888999999***********************9876651578*************998.899999985 PP

  == domain 4    score: -2.6 bits;  conditional E-value: 0.67
   TIGR02064 325 eydeivelvekiidfWdeegke.reriGelikrlglakf 362
                 ++ ++ + ve i+ +W+ + ++  e +G++ +r+g+ k+
  MMETSP1137-20121227|9513_1 656 PLTDLEQTVEPIFAMWKSQRNApDEALGDFCHRVGVDKV 694
                 556667788899999987665427899***999998775 PP

>> TIGR02066  dsrB: sulfite reductase, dissimilatory-type beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.9   0.0   0.00024      0.14      41     129 ..     190     278 ..     172     291 .. 0.73
   2 ?   -1.9   0.0      0.49   2.9e+02     238     312 ..     377     453 ..     367     472 .. 0.61
   3 !    5.4   0.0    0.0029       1.7      90     167 ..     548     626 ..     508     631 .. 0.84
   4 ?    1.1   0.0     0.061        35     275     309 ..     661     696 ..     655     702 .. 0.82

  Alignments for each domain:
  == domain 1    score: 8.9 bits;  conditional E-value: 0.00024
   TIGR02066  41 vsvdtlrklcdiadkyadGylritirnnveflvsdeskvqklideleklgf.pvGGtgdavagnivhtqgwlhcdipaidasgivkalmd 129
                 v     r+l d+++ky++G lr t+r+  +     +  ++k+i  + ++g  + GG gd    n+     +   + + + a    ka+ d
  MMETSP1137-20121227|9513_1 190 VPAALFRELDDLSNKYGQGDLRATTRQAFQLHGVLKGDLKKVISTIANVGShTYGGCGDINR-NVMVPAVHFPNNPAYVYAQKYSKAIAD 278
                 5556789*********************9998888888888888888876514566555444.565555555556666666666666666 PP

  == domain 2    score: -1.9 bits;  conditional E-value: 0.49
   TIGR02066 238 glailvGGklsna.rvkPelskvvvpyiPnePPrypevvavvkkileaykedakk....yerlaewveriGWekffelvg 312
                 g  i+vGG +  + r++ ++++ +         + ++  +++k i+ + ++++++      rl+  v+ +G +kf  lv+
  MMETSP1137-20121227|9513_1 377 GFNIVVGGGMGRThRKESTFARAADHLG---FVKKDDFFEAMKAIIATQRDHGNRevraSARLKYLVHTLGIDKFRSLVE 453
                 5667777777766233455666543221...1223344455566666666555441111567888888888888877765 PP

  == domain 3    score: 5.4 bits;  conditional E-value: 0.0029
   TIGR02066  90 gfpvGGtgdavagnivhtqgwlhcdipaidasgivkalmdelieyfteeklPakvris.lsccasmcgavtasdiaivg 167
                 g  +    da++ +   + ++  c ++  +a  +   +   l  +++e  + +   ++ +++c+++c+    ++ia vg
  MMETSP1137-20121227|9513_1 548 GVKLIHEIDAITRKSIACPSFPLCGLAMAEAERVQPQINARLNAKLREMGMANDEFVTrTTGCPNGCARPYMAEIAFVG 626
                 55555566777777788999999****************************99877763899**************997 PP

  == domain 4    score: 1.1 bits;  conditional E-value: 0.061
   TIGR02066 275 vavvkkileaykedak.kyerlaewveriGWekffe 309
                  ++v  i+ ++k++ + + e l ++ +r+G +k  e
  MMETSP1137-20121227|9513_1 661 EQTVEPIFAMWKSQRNaPDEALGDFCHRVGVDKVEE 696
                 67899999****98662689**********998755 PP

>> TIGR02374  nitri_red_nirB: nitrite reductase [NAD(P)H], large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.9   0.0   0.00063      0.37     534     620 ..     152     240 ..     142     249 .. 0.81
   2 !    3.2   0.0    0.0086         5     656     721 ..     330     402 ..     313     455 .. 0.71
   3 !    3.3   0.0    0.0076       4.5     580     711 ..     509     646 ..     482     700 .. 0.82

  Alignments for each domain:
  == domain 1    score: 6.9 bits;  conditional E-value: 0.00063
   TIGR02374 534 kildeeatslqdsndrllaniqkdgtysvvPr..vyGGeinaedLrkiadiveeyel.yvkitggqrldlfGvkkddLPkiwkdLkeagl 620
                 +il+++ + + + n  l+   +++++y  + r  v+ Ge+ a  +r++ d+ ++y+  + + t  q  +l Gv k dL k+   + + g 
  MMETSP1137-20121227|9513_1 152 HILKHHGSYM-QQNRDLKKKAEREKSYQFMLRlkVPCGEVPAALFRELDDLSNKYGQgDLRATTRQAFQLHGVLKGDLKKVISTIANVGS 240
                 4555555544.5677777777788887766542289*********************9**********************9998877665 PP

  == domain 2    score: 3.2 bits;  conditional E-value: 0.0086
   TIGR02374 656 lekryeglrtPhkiklgvsgCereCaeaalkDvGvia.......tekGWnlyvgGngGtkaraadLlaadkdk 721
                 +e  y    +P+k k++ +    +  +  ++D+G +        t kG+n+ vgG  G + r+   +a   d+
  MMETSP1137-20121227|9513_1 330 VEPIYGRTYLPKKFKIAFTVPGDNSVDLYINDIGCVVvmepdgvTLKGFNIVVGGGMGRTHRKESTFARAADH 402
                 5666777788999999999999999999******8752222222569***********999998888877664 PP

  == domain 3    score: 3.3 bits;  conditional E-value: 0.0076
   TIGR02374 580 adiveeyelyvkitggqrldlfGvkkddLPkiwkdLkeaglesghaygkalrtvktCvgsqfcryGqqdsv....qLaielekryeglrt.PhkiklgvsgCereCaeaalkDvGviate.kGWnlyvgGngGtkara 711
                   +v++y+++  +t +q + l  + ++   ++   L e g++  h+     r   +C +   c     ++     q+ + l+ +++ + +   +     +gC+  Ca   + ++  ++   + ++l++gG      r+
  MMETSP1137-20121227|9513_1 509 RTLVDNYGVDLLLTPSQSIVLRNIDPAHKYNVEAVLREHGVKLIHEIDAITRKSIACPSFPLCGLAMAEAErvqpQINARLNAKLREMGMaNDEFVTRTTGCPNGCARPYMAEIAFVGSGpNSYQLWLGGSPNQAERT 646
                 5689*******************************************999999999*99999998766554112256677788887775514567777899******9999999988764267888888876665555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (760 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       128  (0.0312043); expected 82.0 (0.02)
Passed bias filter:                      120  (0.029254); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.66u 0.16s 00:00:00.82 Elapsed: 00:00:00.95
# Mc/sec: 1055.91
//
Query:       MMETSP1137-20121227|9515_1  [L=359]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.8e-08   29.7   3.4    6.2e-07   25.7   2.3    2.7  1  TIGR00870 trp: transient-receptor-potential calcium channel protein


Domain annotation for each model (and alignments):
>> TIGR00870  trp: transient-receptor-potential calcium channel protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.7   2.3   1.5e-10   6.2e-07      16     158 ..     160     327 ..     147     344 .. 0.87

  Alignments for each domain:
  == domain 1    score: 25.7 bits;  conditional E-value: 1.5e-10
   TIGR00870  16 eeekaflkaiergdlalvkrkleeaklveklnincvdrlgrsallsaaieneneelteLllkke.......................................egevGdalLhaisk.elvdaveailllllkaarksltlselandestseftkgitalilAihkqnyeivklLlekgasve 158
                 + +  +l+a+++gd a +k+++e      k +  ++d +g+ al ++a+ n+  +l+ +l+  +                                       +   G ++Lha+++ +  + v+a+l +++ +++k      l n +++s+     ta+++A  + n  +vk L+  ga+++
  MMETSP1137-20121227|9515_1 160 DPQVLYLQACAVGDTAEIKKAIES-----KTDLRVQDIMGEMALHKLAKLNDTANLELVLKHSNeadlewpdkngntpllfaafhgsidvlnllldkganflhQNLNGSTCLHAAVNsNNEKTVQALLVHPKIERHK------LLNMTDKSK----RTAVHIASYRSNEDLVKTLMIHGADIN 327
                 5566789****************9.....7788888********************999999999*************************************99999*******99824556777777777777755......666666554....69************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (359 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       147  (0.0358362); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.32u 0.17s 00:00:00.49 Elapsed: 00:00:00.43
# Mc/sec: 1101.96
//
Query:       MMETSP1137-20121227|9516_1  [L=171]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.053   11.5   1.1       0.42    8.6   0.1    2.7  3  TIGR01639 P_fal_TIGR01639: Plasmodium falciparum uncharacterized domain TIGR01639


Domain annotation for each model (and alignments):
>> TIGR01639  P_fal_TIGR01639: Plasmodium falciparum uncharacterized domain TIGR01639
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.0     0.063   2.6e+02      12      20 ..      60      68 ..      59      73 .. 0.82
   2 ?   -1.6   0.0      0.16   6.5e+02      15      33 ..      84     102 ..      84     105 .. 0.83
   3 ?    8.6   0.1    0.0001      0.42       3      21 ..     124     142 ..     122     146 .. 0.85

  Alignments for each domain:
  == domain 1    score: -0.3 bits;  conditional E-value: 0.063
   TIGR01639 12 kEelnelin 20
                kEe+++++ 
  MMETSP1137-20121227|9516_1 60 KEEIKKMVG 68
                79****996 PP

  == domain 2    score: -1.6 bits;  conditional E-value: 0.16
   TIGR01639  15 lnelinsLdeivnrndmls 33 
                 l+ ++n+  e ++  d+l+
  MMETSP1137-20121227|9516_1  84 LQIVLNKMAERPSQADVLK 102
                 5778999999999999986 PP

  == domain 3    score: 8.6 bits;  conditional E-value: 0.0001
   TIGR01639   3 yndlskkltkEelnelins 21 
                  n++   +t+Ee++e+i +
  MMETSP1137-20121227|9516_1 124 ANEIGEVITDEEISEMIAE 142
                 5889999**********76 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (171 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       122  (0.0297416); expected 82.0 (0.02)
Passed bias filter:                       99  (0.0241346); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.18u 0.16s 00:00:00.34 Elapsed: 00:00:00.34
# Mc/sec: 663.83
//
Query:       MMETSP1137-20121227|9517_1  [L=605]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (605 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       205  (0.0499756); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.14s 00:00:00.53 Elapsed: 00:00:00.54
# Mc/sec: 1478.77
//
Query:       MMETSP1137-20121227|9518_1  [L=443]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (443 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       134  (0.032667); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.15s 00:00:00.47 Elapsed: 00:00:00.45
# Mc/sec: 1299.36
//
Query:       MMETSP1137-20121227|9519_1  [L=133]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (133 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        51  (0.012433); expected 82.0 (0.02)
Passed bias filter:                       41  (0.00999512); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.18s 00:00:00.35 Elapsed: 00:00:00.32
# Mc/sec: 548.58
//
Query:       MMETSP1137-20121227|9520_1  [L=132]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (132 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        72  (0.0175524); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.14s 00:00:00.28 Elapsed: 00:00:00.30
# Mc/sec: 580.75
//
Query:       MMETSP1137-20121227|9521_1  [L=670]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.6e-19   67.1   8.1    3.6e-19   67.1   5.6    2.6  2  TIGR00880 2_A_01_02: multidrug resistance protein
    1.8e-09   34.7   1.4    1.8e-09   34.7   1.0    2.3  2  TIGR00898 2A0119: cation transport protein
      4e-08   30.9   5.2      4e-08   30.9   3.6    2.3  2  TIGR00710 efflux_Bcr_CflA: drug resistance transporter, Bcr/CflA subfamily
    6.9e-08   30.0  27.4     0.0042   14.3   8.2    3.2  3  TIGR00900 2A0121: H+ Antiporter protein
    3.2e-07   27.4   5.0    3.2e-07   27.4   3.4    2.1  2  TIGR00895 2A0115: MFS transporter, aromatic acid:H+ symporter (AAHS) family
    3.6e-07   27.4   3.1    3.6e-07   27.4   2.1    2.7  3  TIGR00881 2A0104: phosphoglycerate transporter family protein
  ------ inclusion threshold ------
      0.012   11.3   0.1       0.02   10.6   0.0    1.3  1  TIGR01299 synapt_SV2: synaptic vesicle protein SV2


Domain annotation for each model (and alignments):
>> TIGR00880  2_A_01_02: multidrug resistance protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.1   5.6   6.1e-22   3.6e-19       1     141 []     245     393 ..     245     393 .. 0.89
   2 !    5.0  10.5    0.0092       5.4       1     114 [.     504     623 ..     504     652 .. 0.83

  Alignments for each domain:
  == domain 1    score: 67.1 bits;  conditional E-value: 6.1e-22
   TIGR00880   1 glllagyAlgqlvvsplsglltdrvGrkpvllvglfifvlsqllfalssnitvliiarilqGfgaaaalvagaaliadiikeeersvalgllsagialgpilGpllGavla.........qalgwralflilallallafilllfllpeT 141
                 g l+ +y lgql+ s  +g+l+d  Grk+++l+gl  ++l q+lf +s++++v + +r+  G+  a++++a +a++ d+++ ee + a++l+s +   g+i+Gp+lG++l              +  + l+ a+lal+++++++f++peT
  MMETSP1137-20121227|9521_1 245 GFLMSAYQLGQLLSSFPLGALADTWGRKNIMLLGLWACTLPQILFGFSTSFSVAVSLRFAMGLPNAIVVAA-KAMAPDLVPVEEQGFAMSLVSGMWGGGCIIGPALGGLLSstgpegsilGENPFLLPNLVGAALALASLAAVYFFIPET 393
                 56788999*******************************************************99887665.6*************************************98887753333334445556789999************98 PP

  == domain 2    score: 5.0 bits;  conditional E-value: 0.0092
   TIGR00880   1 glllagyAlgqlvvsplsg.lltdrvGrkpvllvglfifvlsqll.....falssnitvliiarilqGfgaaaalvagaaliadiikeeersvalgllsagialgpilGpllGavlaqal 114
                 g+ll +++++ +++ +++  +lt +++++ +  ++ ++ +++ ++     +a+++++ +l++  +l  f++aa ++a+  l+   + +  r+++ gl +a++a +  +Gp l a l++++
  MMETSP1137-20121227|9521_1 504 GWLLSASGMALIFFQLIVLpILTRKFSYTALFTGSSLVAAVFYAAspfvgIATAQSLPMLVVVLVLCRFSSAAQFTAVFVLLNXSVVAADRGRIQGLSMAFAAGSRAVGPTLAAELFAWS 623
                 6888899998888887765157889******99999999999876222226788***********************************************************9999775 PP

>> TIGR00898  2A0119: cation transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.7   1.0   3.1e-12   1.8e-09     130     234 ..     246     349 ..     224     354 .. 0.93
   2 ?    1.2   2.1     0.044        26     161     227 ..     542     607 ..     508     624 .. 0.75

  Alignments for each domain:
  == domain 1    score: 34.7 bits;  conditional E-value: 3.1e-12
   TIGR00898 130 ltqsvvfvGvLlGslvlGqlsDrfGRkkvLllstlvtavsgvltafspnytvflvlrlLvGvgiagivvvalvLitEflpkkaRaivgilievffalGllllall 234
                  + s + +G Ll+s+ lG l+D++GRk+++ll     ++  +l  fs +++v + lr+  G+  a  vv+a  +   ++p++    +  l+  ++  G ++ + l
  MMETSP1137-20121227|9521_1 246 FLMSAYQLGQLLSSFPLGALADTWGRKNIMLLGLWACTLPQILFGFSTSFSVAVSLRFAMGLPNAI-VVAAKAMAPDLVPVEEQGFAMSLVSGMWGGGCIIGPAL 349
                 56899********************************************************98765.99999************************999987765 PP

  == domain 2    score: 1.2 bits;  conditional E-value: 0.044
   TIGR00898 161 lstlvtavsgvltafspnytvflvlrlLvGvgiagivvvalvLitEflpkkaRaivgilievffalG 227
                  +++ +a   v  a + ++ +++v+ +L+ +++a+  ++++vL    +  ++R +++ l  ++fa G
  MMETSP1137-20121227|9521_1 542 AAVFYAASPFVGIATAQSLPMLVVVLVLCRFSSAAQFTAVFVLLNXSVVAADRGRIQGL-SMAFAAG 607
                 44444444445567788888888888888888888888888888888888888888877.5666655 PP

>> TIGR00710  efflux_Bcr_CflA: drug resistance transporter, Bcr/CflA subfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.9   3.6   6.9e-11     4e-08      47     153 ..     249     354 ..     214     398 .. 0.82
   2 ?   -5.6   4.2         7   4.1e+03     242     318 ..     501     577 ..     487     653 .. 0.59

  Alignments for each domain:
  == domain 1    score: 30.9 bits;  conditional E-value: 6.9e-11
   TIGR00710  47 tlyllglavgqLllGplsDsyGRkpvlLlgllvfalsslvlalsenietllvlRflqafgasaalVisqalvrDiyakeelskvysilmlllalaPllapliGgyvl 153
                 ++y lg  ++   lG l+D +GRk ++Llgl +  l  +   +s +  + + lRf  ++   a +V  +a++ D+ + ee    +s+++ +     +++p +Gg++ 
  MMETSP1137-20121227|9521_1 249 SAYQLGQLLSSFPLGALADTWGRKNIMLLGLWACTLPQILFGFSTSFSVAVSLRFAMGLPN-AIVVAAKAMAPDLVPVEEQGFAMSLVSGMWGGGCIIGPALGGLLS 354
                 45555555555669******************************************99976.56899*************************************986 PP

  == domain 2    score: -5.6 bits;  conditional E-value: 7
   TIGR00710 242 evfgllfalniialifgsfligrlvkkigaksllria.lvllivsavllvltallglvslalviavailvgigvslvl 318
                 +  g l    ++alif   ++  ++++  +++ l  +   + +v  ++  +  +   +sl+++++v++l     s++ 
  MMETSP1137-20121227|9521_1 501 SSLGWLLSASGMALIFFQLIVLPILTRKFSYTALFTGsSLVAAVFYAASPFVGIATAQSLPMLVVVLVLCRF-SSAAQ 577
                 555666666666666666666555555555544444423444444455556666666666666666666555.33333 PP

>> TIGR00900  2A0121: H+ Antiporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.5   1.7   2.5e-05     0.015     218     316 ..     206     311 ..     199     314 .. 0.81
   2 !   13.0   0.2   1.8e-05     0.011     109     155 ..     312     358 ..     308     387 .. 0.86
   3 !   14.3   8.2   7.1e-06    0.0042      34     154 ..     501     623 ..     467     649 .. 0.69

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 2.5e-05
   TIGR00900 218 allfnlvfapiisvllpyvtskv....lrrssve....vgvvlaafglGallGalllgllgkylkraalitiavlviglailvlgllnpnlllllvlaaaiGvvvgl 316
                 ++ ++l++a  is+++py+ s v    +    ++    +g++++a+ lG ll ++ lg l+ +  r  ++ ++  +  l+ ++ g++ + + + + l +a+G+ +++
  MMETSP1137-20121227|9521_1 206 FSFAVLANAVSISNVFPYAPSMVkhxnMTTDDRQlgfyAGFLMSAYQLGQLLSSFPLGALADTWGRKNIMLLGLWACTLPQILFGFSTS-FSVAVSLRFAMGLPNAI 311
                 556677788888899999887776666333334411226889999*******************************************7.************98776 PP

  == domain 2    score: 13.0 bits;  conditional E-value: 1.8e-05
   TIGR00900 109 tpatsailPdlvpeeeltranslsqlvrslieivgPgiggllvatlg 155
                   a +a+ Pdlvp ee   a sl++ +     i+gP++ggll +t++
  MMETSP1137-20121227|9521_1 312 VVAAKAMAPDLVPVEEQGFAMSLVSGMWGGGCIIGPALGGLLSSTGP 358
                 57899************************************998864 PP

  == domain 3    score: 14.3 bits;  conditional E-value: 7.1e-06
   TIGR00900  34 svlslaalagllplvvvspiaGvlvDR.ldrkkvmvgaDliravlvavlpfvallg.leiwmvlvvalilsiaqafftpatsailPdlvpeeeltranslsqlvrslieivgPgiggllvatl 154
                 s+l+  ++a  ++l+++ +i+ ++  R +   ++  g+ l+ av  a+ pfv ++   +++m++vv+++  + +a++++a+  +l   v  ++  r  +ls++    ++ vgP +++ l a+ 
  MMETSP1137-20121227|9521_1 501 SSLGWLLSASGMALIFFQLIVLPILTRkFSYTALFTGSSLVAAVFYAASPFVGIATaQSLPMLVVVLVLCRFSSAAQFTAVFVLLNXSVVAADRGRIQGLSMAFAAGSRAVGPTLAAELFAWS 623
                 455566667777777777777655544366667777777777777777777777777777777777777777777777777777777777777777777777777777777777777777765 PP

>> TIGR00895  2A0115: MFS transporter, aromatic acid:H+ symporter (AAHS) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.4   3.4   5.5e-10   3.2e-07      54     162 ..     244     355 ..     224     396 .. 0.83
   2 ?   -4.9   5.8       3.6   2.1e+03      47     146 ..     496     601 ..     456     658 .. 0.58

  Alignments for each domain:
  == domain 1    score: 27.4 bits;  conditional E-value: 5.5e-10
   TIGR00895  54 lGfllsagLiGmvlGallfgplaDrigRkrvllvsillfsvftlasalatnvtqLlvlRflaglGlGgllpnliaLvsEyapkrfratvvglvav....GyaiGaavggllaa 162
                 +Gfl+sa  +G +l ++ +g+laD  gRk+++l+++   ++  ++ +++t++   + lRf  gl   +++ ++ a++ + +p   ++++++lv      G  iG a+ggll++
  MMETSP1137-20121227|9521_1 244 AGFLMSAYQLGQLLSSFPLGALADTWGRKNIMLLGLWACTLPQILFGFSTSFSVAVSLRFAMGLP-NAIVVAAKAMAPDLVPVEEQGFAMSLVSGmwggGCIIGPALGGLLSS 355
                 79**********************************************************88875.6899999*************999988865111145566666666654 PP

  == domain 2    score: -4.9 bits;  conditional E-value: 3.6
   TIGR00895  47 wgldkvelGfllsagLiGmv.lGallfgplaDrigRkrvllvsillfsvftlas.....alatnvtqLlvlRflaglGlGgllpnliaLvsEyapkrfratvvglv 146
                 +g++ ++lG+llsa+ + ++ +  +++ +l  ++    + + s l+ +vf +as     a a++++ L+v+ +l      + + ++++L+   + +  r+ + gl 
  MMETSP1137-20121227|9521_1 496 FGMQISSLGWLLSASGMALIfFQLIVLPILTRKFSYTALFTGSSLVAAVFYAASpfvgiATAQSLPMLVVVLVLCRFSSAAQFTAVFVLLNXSVVAADRGRIQGLS 601
                 5555555666665533333303334444555555555555555555555554432222244555555555555555555555555555544443333333333332 PP

>> TIGR00881  2A0104: phosphoglycerate transporter family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0      0.31   1.8e+02      92     123 ..     175     206 ..     173     218 .. 0.87
   2 !   27.4   2.1   6.1e-10   3.6e-07      19     134 ..     225     344 ..     218     381 .. 0.79
   3 ?   -3.6   7.8       1.5   8.9e+02      64     165 ..     541     651 ..     488     661 .. 0.67

  Alignments for each domain:
  == domain 1    score: -1.3 bits;  conditional E-value: 0.31
   TIGR00881  92 lnGlfqglgwppcgrlltkwfsrserGtvvai 123
                 l G   ++++p+ +rl ++w+  + rG ++a+
  MMETSP1137-20121227|9521_1 175 LAGQTLATARPCPKRLHRAWVRLRYRGPLIAF 206
                 667777899******************99887 PP

  == domain 2    score: 27.4 bits;  conditional E-value: 6.1e-10
   TIGR00881  19 pelqeeiglsktd..lGlllsafsiaYgisk....fvvgvvsDrvsarvflaigLilvaivnlflgfssslwvliallalnGlfqglgwppcgrlltkwfsrserGtvvaiwnishnvggal 134
                 p+++ +  ++ +d  lG+ +   + aY +++    f+ g ++D  + + ++++gL ++ + ++++gfs+s+ v + l++  Gl +++     + +   +++ +e G ++++ + ++  gg +
  MMETSP1137-20121227|9521_1 225 PSMVKHXNMTTDDrqLGFYAGFLMSAYQLGQllssFPLGALADTWGRKNIMLLGLWACTLPQILFGFSTSFSVAVSLRFAMGLPNAIVVAAKA-MAPDLVPVEEQGFAMSLVS-GMWGGGCI 344
                 6777777776664448777777777777666111166789*******************************************9998765555.8999******999998753.44444444 PP

  == domain 3    score: -3.6 bits;  conditional E-value: 1.5
   TIGR00881  64 aigLilvaivnlflgfssslwvliallalnGlfqglgwppcgrlltkwfsrserGtv....vaiwnishnvggallpplvllai.....alllswhvvfivpgiiaiivsl 165
                  ++++ +a   ++++ ++sl++l+++l+l+ +  ++ +  +  ll   +   +rG++    +a+ + s  vg  l++ l++ ++       ll+ h vf+v ++  +  +l
  MMETSP1137-20121227|9521_1 541 VAAVFYAASPFVGIATAQSLPMLVVVLVLCRFSSAAQFTAVFVLLNXSVVAADRGRIqglsMAFAAGSRAVGPTLAAELFAWSLtngmhSTLLDVHCVFLVCATTSVXTAL 651
                 333444444557777777*********************999999999999999987444467888889999999998665543111112445555556666666666555 PP

>> TIGR01299  synapt_SV2: synaptic vesicle protein SV2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   3.4e-05      0.02     172     305 ..     206     344 ..     131     352 .. 0.71

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 3.4e-05
   TIGR01299 172 lglalmadgvevfvvgfvlpsaekd..lclsdsn....kgllglivylgmmvgaflwggladklgrkqsllislsvnsvfaflssfvqgygtfllcrllsgvgiggaipivfsyfa.evlarekrgehlswlcmfwmiggv 305
                 + +a++a+ v +  v    ps  k   +   d +     g+l +   lg ++ +f  g lad  grk+ +l+ l   ++  +l  f   + + +  r+   +g+  ai +    +a +++  e +g  +s +  +w  g +
  MMETSP1137-20121227|9521_1 206 FSFAVLANAVSISNVFPYAPSMVKHxnMTTDDRQlgfyAGFLMSAYQLGQLLSSFPLGALADTWGRKNIMLLGLWACTLPQILFGFSTSFSVAVSLRF--AMGLPNAIVVAAKAMApDLVPVEEQGFAMSLVSGMWGGGCI 344
                 56777778887777777777766541144444442222467888889***************************999999998888888777666555..56667777766655542566677778777777777766665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (670 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       141  (0.0343735); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.53u 0.16s 00:00:00.69 Elapsed: 00:00:00.53
# Mc/sec: 1668.54
//
Query:       MMETSP1137-20121227|9522_1  [L=192]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (192 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       188  (0.0458313); expected 82.0 (0.02)
Passed bias filter:                      104  (0.0253535); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.17s 00:00:00.37 Elapsed: 00:00:00.30
# Mc/sec: 844.73
//
Query:       MMETSP1137-20121227|9523_1  [L=605]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (605 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       100  (0.0243784); expected 82.0 (0.02)
Passed bias filter:                       39  (0.00950756); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.17s 00:00:00.55 Elapsed: 00:00:00.59
# Mc/sec: 1353.45
//
Query:       MMETSP1137-20121227|9524_1  [L=194]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (194 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        93  (0.0226719); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.13s 00:00:00.31 Elapsed: 00:00:00.31
# Mc/sec: 826.00
//
Query:       MMETSP1137-20121227|9525_1  [L=647]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (647 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       145  (0.0353486); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.14s 00:00:00.56 Elapsed: 00:00:00.47
# Mc/sec: 1816.96
//
Query:       MMETSP1137-20121227|9526_1  [L=616]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (616 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        77  (0.0187713); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.17s 00:00:00.57 Elapsed: 00:00:00.35
# Mc/sec: 2323.01
//
Query:       MMETSP1137-20121227|9527_1  [L=219]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.6e-30  103.0   0.0    5.3e-30  102.8   0.0    1.0  1  TIGR01145 ATP_synt_delta: ATP synthase F1, delta subunit
    0.00015   19.5   0.0    0.00019   19.1   0.0    1.1  1  TIGR03321 alt_F1F0_F0_B: alternate F1F0 ATPase, F0 subunit B


Domain annotation for each model (and alignments):
>> TIGR01145  ATP_synt_delta: ATP synthase F1, delta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.8   0.0   2.6e-33   5.3e-30       1     171 [.      43     216 ..      43     217 .. 0.96

  Alignments for each domain:
  == domain 1    score: 102.8 bits;  conditional E-value: 2.6e-33
   TIGR01145   1 varpYakAlfelAeekssleevkeelnfvkevlknekelkkllsnPlisaekkkelikkvlgeqld.esslnllllLverkRlaalpdileeFlklskeaeqtaevevisavalteeqqakiaeklekklka..kkvklalkvdksligGviikigdkviDgsvrgqLkrlsrq 171
                 +a +Y +Al+  A ++  l +v+ +l  ++ +l+++k++k++  +P +s+++k++l+   lg++   ++++n++ +L e +R++ lp +++ + +l+ +a+ ++ + ++s+ +l+e+q+++i+++++++ ++   kv++ +kvd+ l+ G +i+igdk +D s   qLk+l+ +
  MMETSP1137-20121227|9527_1  43 IAGRYTNALYCAAAKNGDLLKVESDLGALAGILQTSKAIKAFTMDPGVSRSEKAKLLVGSLGDAGAcNTTKNMVAVLCESGRMKELPTVMKMYATLMSAAKGEVSALITSSHELEEAQMESIRSQIAEISGSdlTKVQIDVKVDPGLLSGYTIEIGDKFVDYSSATQLKKLAVA 216
                 899***********************************************************985427889**********************************************************9873369**********************************9876 PP

>> TIGR03321  alt_F1F0_F0_B: alternate F1F0 ATPase, F0 subunit B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.0   9.5e-08   0.00019     147     241 ..     113     213 ..      96     217 .. 0.78

  Alignments for each domain:
  == domain 1    score: 19.1 bits;  conditional E-value: 9.5e-08
   TIGR03321 147 ekmveafvk..rlrtldeeeka.alaealkesgeevlvrsafeLpeeqrekikktiretl...keeiklrfetepdlisGieltagGqklaWsvedyLesl 241
                 ++mv ++ +  r+++l +  k  a    ++++++ +l+ s+ eL+e+q e+i++ i+e+     ++++++ ++ p l sG  ++ g + + +s + +L++l
  MMETSP1137-20121227|9527_1 113 KNMVAVLCEsgRMKELPTVMKMyATLMSAAKGEVSALITSSHELEEAQMESIRSQIAEISgsdLTKVQIDVKVDPGLLSGYTIEIGDKFVDYSSATQLKKL 213
                 55666664333677776654431223345667889***********************9944446899******************************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (219 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       122  (0.0297416); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.22u 0.16s 00:00:00.38 Elapsed: 00:00:00.28
# Mc/sec: 1032.34
//
Query:       MMETSP1137-20121227|9528_1  [L=407]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.1e-14   51.3   0.0    7.5e-14   49.5   0.0    1.9  1  TIGR03729 acc_ester: putative phosphoesterase
    3.7e-08   30.3   0.3    5.2e-08   29.8   0.2    1.1  1  TIGR00990 3a0801s09: mitochondrial precursor proteins import receptor
    1.1e-07   29.9   0.2    0.00056   17.9   0.0    2.5  3  TIGR00040 yfcE: phosphodiesterase, MJ0936 family
     0.0035   13.4   4.2     0.0061   12.6   2.9    1.3  1  TIGR03939 PGA_TPR_OMP: poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA
  ------ inclusion threshold ------
      0.094   10.1   3.9       0.44    7.9   1.6    2.1  2  TIGR02521 type_IV_pilW: type IV pilus biogenesis/stability protein PilW


Domain annotation for each model (and alignments):
>> TIGR03729  acc_ester: putative phosphoesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.5   0.0   9.1e-17   7.5e-14       4     239 .]     147     385 ..     144     385 .. 0.67

  Alignments for each domain:
  == domain 1    score: 49.5 bits;  conditional E-value: 9.1e-17
   TIGR03729   4 visDlHlDlnkvdeeeileklaevlkkkkidilliaGDisNdfkkslafieklqelkeikvtflaGNHdll...kdlteee.............lessdselylhnkfidikneetalignnGWYDYsfaeektekeilklkkaywiDrrikrpl..sDkeltalvlkqvkkqlkels...kkkvilvtHfvphkefievpadhrifdmlnAflGseklgkllekyeikavifGHlHrrkkplkignvlYlnralGy 239
                  +sD+H D+  + e +   + +++ k    d+ ++aGD+   f+  + +++++++    +v +++GNHdl+   k+ +++e             l++  +e  + ++   +  ++t+++    WY Y+f ++  +           +D+  k+p+  +D+    + l++   ++ + +   +  vi  +Hf p+ke    p  h+   m+ A  G  ++++ l++ ++k  ifGH+H ++ + + ++v Y+++a+Gy
  MMETSP1137-20121227|9528_1 147 AVSDVHYDHAGAREWASALSRTAYTK----DTIIVAGDVGDTFNAVKLCLKAFRA-VFRRVFYVPGNHDLWirpKGQHSNEpaafadsvakllaLWQMCDEIDVDVGPA-QISTSTVVLPLDSWYSYTFDHHDPKPGL------TLFDKFCKWPMgyDDAWKFMTGLNESRLEMVKTQspsTTDVISFSHFLPRKELP-LPGVHE---MAKA-SGCLEIESQLRSAKVKLHIFGHTHINT-VHEYEGVRYMQNAMGY 385
                 68999999776665553333333332....4566677766666666666666664.4569***********99944444441111001001011222223333333333.347999*************887766633......3689999999844566666677777766666655666789***********987.666555...4554.5999********************976.66779**********9 PP

>> TIGR00990  3a0801s09: mitochondrial precursor proteins import receptor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.8   0.2   6.4e-11   5.2e-08     127     200 ..       4      78 ..       2      91 .. 0.91

  Alignments for each domain:
  == domain 1    score: 29.8 bits;  conditional E-value: 6.4e-11
   TIGR00990 127 aaklkekGnkayrnkdfdkaielyskalllke.dPvyysnraacynaladlekvvedttaaleldpdyvkalnrr 200
                 aa+ k++Gn +++  ++ +ai  y+ a+   + d   ysnr+a   al++l+  ++d+ +a++l   + k   r 
  MMETSP1137-20121227|9528_1   4 AAAAKQRGNAFFKAGKHVEAIAAYDDAIAAAPsDETLYSNRSAAQAALGNLDAALADAKRAIALAGTWPKGYSRA 78 
                 7899************************9876599*****************************99988887775 PP

>> TIGR00040  yfcE: phosphodiesterase, MJ0936 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.0       2.4     2e+03      22      63 ..      14      56 ..       6      68 .. 0.56
   2 !   17.9   0.0   6.8e-07   0.00056       2      63 ..     144     211 ..     143     232 .. 0.82
   3 !    9.5   0.0   0.00025      0.21      96     126 ..     346     376 ..     301     380 .. 0.79

  Alignments for each domain:
  == domain 1    score: -3.4 bits;  conditional E-value: 2.4
   TIGR00040 22 llkklsevdlvvhaGdlt....sakvlkefedlaekviavrGnnDg 63
                ++k+ ++v+ +    d +    s ++l +   +a+   a  Gn D 
  MMETSP1137-20121227|9528_1 14 FFKAGKHVEAIAAYDDAIaaapSDETLYSNRSAAQ---AALGNLDA 56
                55555666666666666654444444444444444...77788885 PP

  == domain 2    score: 17.9 bits;  conditional E-value: 6.8e-07
   TIGR00040   2 kilvlsDtHiper.atelpvellkklsevdlvvhaGdlt.....sakvlkefedlaekviavrGnnDg 63 
                 ++ ++sD H     a e + +l +     d+++ aGd++      +  lk f  +  +v+ v Gn+D 
  MMETSP1137-20121227|9528_1 144 RVFAVSDVHYDHAgAREWASALSRTAYTKDTIIVAGDVGdtfnaVKLCLKAFRAVFRRVFYVPGNHDL 211
                 7899*****76541666677777778899**********888877889*******************4 PP

  == domain 3    score: 9.5 bits;  conditional E-value: 0.00025
   TIGR00040  96 eslealakeldvDvlifGHtHepvaeelegi 126
                 + +e + ++ +v + ifGHtH+  + e eg+
  MMETSP1137-20121227|9528_1 346 LEIESQLRSAKVKLHIFGHTHINTVHEYEGV 376
                 6778888999999***********9999886 PP

>> TIGR03939  PGA_TPR_OMP: poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.6   2.9   7.4e-06    0.0061     100     203 ..      18     121 ..       5     139 .. 0.93

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 7.4e-06
   TIGR03939 100 kqwdkAlelyrkllqrdPknpdlllGlaltladagkdeeAlkalkelkerfpsdaerlealaYvlraaedsldalaaiqqalrlePdnkellkelveiltrlga 203
                 ++  +A++ y +++  +P++++l +    ++a  g+ + Al+ +k++ +  ++  + ++  +Y++ + +d+ +a   +++ lr++++n el +++  +++++++
  MMETSP1137-20121227|9528_1  18 GKHVEAIAAYDDAIAAAPSDETLYSNRSAAQAALGNLDAALADAKRAIALAGTWPKGYSRAGYAALQGGDEEAAYWFYSNGLRWDAQNVELTRGRSAAMQQINS 121
                 566789**********************************************************************************************9986 PP

>> TIGR02521  type_IV_pilW: type IV pilus biogenesis/stability protein PilW
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   1.6   0.00054      0.44      34      94 ..       7      67 ..       2      73 .. 0.91
   2 ?    6.8   0.1    0.0012      0.96      45      99 ..      52     106 ..      49     110 .. 0.93

  Alignments for each domain:
  == domain 1    score: 7.9 bits;  conditional E-value: 0.00054
   TIGR02521 34 rvqLaleYleqgdlekAkenlekAleldpkdadanlalAlyyqqlgelekAeesfrkAltl 94
                  q + +++++g+  +A ++ ++A++++p+d+  ++ +  +   lg+l++A +  ++A++l
  MMETSP1137-20121227|9528_1  7 AKQRGNAFFKAGKHVEAIAAYDDAIAAAPSDETLYSNRSAAQAALGNLDAALADAKRAIAL 67
                5588999*******************************************99999999877 PP

  == domain 2    score: 6.8 bits;  conditional E-value: 0.0012
   TIGR02521  45 gdlekAkenlekAleldpkdadanlalAlyyqqlgelekAeesfrkAltlkpnng 99 
                 g+l++A ++ + A++l+    + ++  +++  q g++e+A + + ++l+ + +n 
  MMETSP1137-20121227|9528_1  52 GNLDAALADAKRAIALAGTWPKGYSRAGYAALQGGDEEAAYWFYSNGLRWDAQNV 106
                 899*********************************************9988775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (407 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       127  (0.0309605); expected 82.0 (0.02)
Passed bias filter:                      108  (0.0263286); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.36u 0.12s 00:00:00.48 Elapsed: 00:00:00.45
# Mc/sec: 1193.77
//
Query:       MMETSP1137-20121227|9529_1  [L=71]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (71 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        34  (0.00828864); expected 82.0 (0.02)
Passed bias filter:                       34  (0.00828864); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.14s 00:00:00.27 Elapsed: 00:00:00.25
# Mc/sec: 374.85
//
Query:       MMETSP1137-20121227|9530_1  [L=70]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        48  (0.0117016); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.12s 00:00:00.24 Elapsed: 00:00:00.24
# Mc/sec: 384.97
//
Query:       MMETSP1137-20121227|9531_1  [L=314]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (314 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       150  (0.0365675); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.17s 00:00:00.44 Elapsed: 00:00:00.73
# Mc/sec: 567.73
//
Query:       MMETSP1137-20121227|9532_1  [L=164]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (164 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        68  (0.0165773); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.15s 00:00:00.31 Elapsed: 00:00:00.42
# Mc/sec: 515.39
//
Query:       MMETSP1137-20121227|9533_1  [L=324]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (324 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        66  (0.0160897); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.17s 00:00:00.42 Elapsed: 00:00:00.46
# Mc/sec: 929.66
//
Query:       MMETSP1137-20121227|9535_1  [L=278]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (278 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        82  (0.0199902); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.16s 00:00:00.41 Elapsed: 00:00:00.51
# Mc/sec: 719.47
//
Query:       MMETSP1137-20121227|9536_1  [L=432]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (432 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        45  (0.0109703); expected 82.0 (0.02)
Passed bias filter:                       39  (0.00950756); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.14s 00:00:00.41 Elapsed: 00:00:00.44
# Mc/sec: 1295.89
//
Query:       MMETSP1137-20121227|9537_1  [L=760]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (760 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        59  (0.0143832); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.13s 00:00:00.57 Elapsed: 00:00:00.63
# Mc/sec: 1592.25
//
Query:       MMETSP1137-20121227|9538_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        36  (0.00877621); expected 82.0 (0.02)
Passed bias filter:                       27  (0.00658216); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.17s 00:00:00.29 Elapsed: 00:00:00.52
# Mc/sec: 129.45
//
Query:       MMETSP1137-20121227|9539_1  [L=41]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (41 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        51  (0.012433); expected 82.0 (0.02)
Passed bias filter:                       44  (0.0107265); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.12s 00:00:00.24 Elapsed: 00:00:00.33
# Mc/sec: 163.99
//
Query:       MMETSP1137-20121227|9540_1  [L=82]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (82 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        62  (0.0151146); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.14s 00:00:00.27 Elapsed: 00:00:00.28
# Mc/sec: 386.54
//
Query:       MMETSP1137-20121227|9541_1  [L=57]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        50  (0.0121892); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.16s 00:00:00.26 Elapsed: 00:00:00.28
# Mc/sec: 268.69
//
Query:       MMETSP1137-20121227|9542_1  [L=301]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (301 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       106  (0.0258411); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.15s 00:00:00.38 Elapsed: 00:00:00.37
# Mc/sec: 1073.75
//
Query:       MMETSP1137-20121227|9543_1  [L=358]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.6e-10   37.0   0.0    6.4e-08   30.3   0.0    2.2  2  TIGR01262 maiA: maleylacetoacetate isomerase


Domain annotation for each model (and alignments):
>> TIGR01262  maiA: maleylacetoacetate isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.3   0.0   1.6e-11   6.4e-08      34      93 ..     106     168 ..      72     174 .. 0.83
   2 !    4.7   0.0    0.0011       4.3     139     169 ..     212     240 ..     198     284 .. 0.86

  Alignments for each domain:
  == domain 1    score: 30.3 bits;  conditional E-value: 1.6e-11
   TIGR01262  34 kdGeqkkeefkalNPqelvPtLkide...gevltqSlAiieyLeetypepaLlpkdpakrarv 93 
                   G+q+++ f ++NP+ ++P++++     ++++ +S Ai+ yL e++pe  Llpk    r+++
  MMETSP1137-20121227|9543_1 106 IGGAQFDSGFVEINPNSKIPAMVDHStdpPTRVFESGAILLYLAEKFPEAGLLPKSGPVRQEA 168
                 4599******************9876666899**********************998888765 PP

  == domain 2    score: 4.7 bits;  conditional E-value: 0.0011
   TIGR01262 139 laalEellkekagafcvGdevtladvcLvpq 169
                 l+ lE+ l++   ++ +Gd  t+ad+ + p 
  MMETSP1137-20121227|9543_1 212 LDVLEKQLAT--HEYIAGDVFTIADIAIWPW 240
                 5566777765..58*************9984 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (358 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        67  (0.0163335); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.29u 0.16s 00:00:00.44 Elapsed: 00:00:00.36
# Mc/sec: 1312.56
//
Query:       MMETSP1137-20121227|9544_1  [L=265]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (265 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        81  (0.0197465); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.20s 00:00:00.40 Elapsed: 00:00:00.40
# Mc/sec: 874.43
//
Query:       MMETSP1137-20121227|9545_1  [L=187]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (187 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       325  (0.0792296); expected 82.0 (0.02)
Passed bias filter:                      175  (0.0426621); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.17s 00:00:00.40 Elapsed: 00:00:00.30
# Mc/sec: 822.73
//
Query:       MMETSP1137-20121227|9547_1  [L=92]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (92 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        87  (0.0212092); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.28
# Mc/sec: 433.68
//
Query:       MMETSP1137-20121227|9548_1  [L=404]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.4e-40  135.3   7.3    8.8e-40  134.9   5.1    1.2  1  TIGR00817 tpt: Tpt phosphate/phosphoenolpyruvate translocator
    6.6e-07   26.8  11.2    9.9e-07   26.3   7.3    1.6  1  TIGR00950 2A78: carboxylate/amino acid/amine transporter


Domain annotation for each model (and alignments):
>> TIGR00817  tpt: Tpt phosphate/phosphoenolpyruvate translocator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  134.9   5.1   4.3e-43   8.8e-40       6     297 ..     100     390 ..      96     395 .. 0.86

  Alignments for each domain:
  == domain 1    score: 134.9 bits;  conditional E-value: 4.3e-43
   TIGR00817   6 lfllwyvlnvyFnivnkkllklfhypvlktlv...slavgvllellswssilkkrlki.skallklllpvaivhtighvtsnvslskvavSfthtikalepifsvvlskfflg.refpltlylsLlpivlGvalasltelsfnllgflsamisniefvarnifsKkilt..kksldklnlyalisililfllspiafiveglklltreflqaiskvnvlklvtvslvaalgifHlyq.qvafqllervspltysvgNvlKRvvvIvvSilffetkisflqvlGvilaiaGvflYskvkak 297
                 +++ wyv +   n   k+ l+ f+ p +++l+   +l   +   +l +  +l +   +  +a+    l + +v   g   +n s+++v+ Sf+ t+ka epi +++l  +fl  ++++l++ lsLlpiv+Gv+  s+ e+sfnl gf  am sn+ f ar+i +K +     +++d+ nl+  +     +ll+p+ + +eg+ l+t     + sk       +  l++ +g+  +++ q+ f +le+v ++t+   N+ +Rv+ I+++i+ f+ +i+ ++++G+ la++G f Y k k+ 
  MMETSP1137-20121227|9548_1 100 MIFFWYVSGALTNSTSKQALQQFKSPPFMSLTlmqHLTATLCGNILLRLLGLRRYKSLpPEAFSWGFLRMILVYSFGFCLTNGSFGAVNASFVDTVKAGEPIATMILTVLFLDsESVTLPVCLSLLPIVGGVSVSSMAEASFNLKGFAMAMGSNLCFSARSICAKLLRSelGRNMDNANLFLHVNAYGSMLLLPFVLYIEGPALIT-----ILSKFD----RPAKLFIFNGFLYFFNnQLNFLVLEKVDAVTHGLINCGRRVANIAFAIVWFGIPINLFNGIGISLALIGAFCYMKAKQM 390
                 567799999999977799999998888777751114455555667778888876554413455567889999**********************************999988626799999********************************************76551157************99****************999.....545544....46789999********9********************************************************999875 PP

>> TIGR00950  2A78: carboxylate/amino acid/amine transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.3   7.3   4.8e-10   9.9e-07      21     262 ..     130     380 ..     111     382 .. 0.77

  Alignments for each domain:
  == domain 1    score: 26.3 bits;  conditional E-value: 4.8e-10
   TIGR00950  21 avlrrlifall...llLpllrlrnslkrllrllllgalqlgvfyvllfl....avkkltvaiaalllvlaPlyvtllsdllekervrkkkllAavlalaGivlllsdgnlsislaGlllgllsgisfAlgtvlakrlvkkeglellqftgfvvl.liGallllpfalllgpnlqalpatslqwlallyLgligtllayf...lynkglkevdasaasilalleplvallLgllilgetlslvqliggalilaa 262
                 ++l+  + a l   +lL ll lr  +    +++  g+l + ++y++ f     ++  ++++++  + +  P+ +++l  l+  ++   + ++  +l ++G v + s  ++s++l+G+ ++++s+++f + ++ ak l++  g ++  ++ f    + G++lllpf l +++++ +++ +s ++   + L ++  +l +f   l +  l++vda++  ++++   ++ +  +++ +g  ++l + ig++l l +
  MMETSP1137-20121227|9548_1 130 LTLMQHLTATLcgnILLRLLGLRRYKSLPPEAFSWGFLRMILVYSFGFCltngSFGAVNASFVDTVKAGEPIATMILTVLFLDSESVTLPVCLSLLPIVGGVSVSSMAEASFNLKGFAMAMGSNLCFSARSICAKLLRSELGRNMDNANLFLHVnAYGSMLLLPFVLYIEGPA-LITILS-KFDRPAKLFIFNGFLYFFnnqLNFLVLEKVDAVTHGLINCGRRVANIAFAIVWFGIPINLFNGIGISLALIG 380
                 444443333332225666666666688888999999999999999877533346777999999999****************99999999999999999955555566********************************998888888876552569999999999999888.555555.666677777777777766454666778888888888888888888888888888888888887777776655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (404 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       109  (0.0265724); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.31u 0.16s 00:00:00.47 Elapsed: 00:00:00.36
# Mc/sec: 1481.21
//
Query:       MMETSP1137-20121227|9549_1  [L=215]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      0.004   13.3   0.5     0.0049   13.0   0.3    1.0  1  TIGR04154 archaeo_STT3: oligosaccharyl transferase, archaeosortase system-associated


Domain annotation for each model (and alignments):
>> TIGR04154  archaeo_STT3: oligosaccharyl transferase, archaeosortase system-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   0.3   1.2e-06    0.0049     209     324 ..      52     166 ..      44     179 .. 0.86

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 1.2e-06
   TIGR04154 209 ppavlfvlivgvfvlvqlvldllrgkspeylaivgavallvaavlvlpfiekslelsltsysllqvlallgvalglvllallarlverkdldrayypaavlglallgllvlalvlp 324
                 ++ + + li+ +f +++l++d + ++     +ivg + + +a++ +   +ek   + l+ + l    + +  a+++   +++a   er++  ++ + ++++ l+l+++++  lvl 
  MMETSP1137-20121227|9549_1  52 STVICLNLIIIIFGIINLAVDDYDDDLGIAEIIVGSIGFSAALLGLCCTGEK-KLFMLVGIVLSAAALSAWFAVFIWYCTWMADEPERNRDGWFWFFGILTCLFLFVAAFDHLVLC 166
                 56788899******************999999********************.558888888888888888889999999999999************999999999988776654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (215 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       111  (0.02706); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.21u 0.17s 00:00:00.38 Elapsed: 00:00:00.35
# Mc/sec: 810.79
//
Query:       MMETSP1137-20121227|9550_1  [L=655]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.6e-10   37.2  80.5      6e-08   28.7  35.6    2.1  2  TIGR02168 SMC_prok_B: chromosome segregation protein SMC
    1.4e-09   34.1  75.0    1.7e-06   23.8  33.4    2.1  2  TIGR02169 SMC_prok_A: chromosome segregation protein SMC


Domain annotation for each model (and alignments):
>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.2  20.2   5.6e-06     0.012     701     943 ..     181     416 ..     168     424 .. 0.54
   2 !   28.7  35.6   2.9e-11     6e-08     683     947 ..     385     641 ..     382     653 .. 0.76

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 5.6e-06
   TIGR02168 701 elkelekeleeleeeleklrkeleelerklselkkelerlekeveqleerlaqlekeleeleeereeleeeleeaeeelkeaeeeieeleaeieqlke....elkalrealseleaeltelkeeaaekeerleslekeiaalekeleeleeqieeleeeiesleaeieeleeeleeleeeleellkekasleealaelreeleelseelrelekkvkelereleelrek..laqlelrleeleveiael 943
                 + ++++++le+++ ++++l +         ++  ++l +l++ + +l+  ++ + +e++ +e+ r+e+e +l  +++el++ e++ie+ ++ ++ +++    +++ l+e+ +++ea++ + +++  +  e+++++++e+++le+e   l  + +e++e +++ e+ i+e e+++++l e+++ ++k+k ++e          ++l+++ +el  ++++ e+e+ +l+++  + + + +l ++e++ +e 
  MMETSP1137-20121227|9550_1 181 NTEAIRQTLENIRAQIDSLFTGRSPP---EQDHAAQLLALRTDITTLAVLAEGRLAERQAAENARNEAEWQLGLKQAELAALESRIESKDRLLNSQETtfriAIAILEERARNAEARAADFEAQCGRRDEDVRNVRDEVSKLERENSSLFYSVREQKELVAAREKTIREHEATINRLXEQVTTITKDKLRAE----------DSLMKTEQELTGAKSKHEAEIYNLQKSacHGECQIKLLQAEMRHQEE 416
                 44445555555554444444433333...3344456666777777777777777777777777777777777777777777777777666555554431111455566666666666666666667777777777777777777777777777777777777777777777777777777777777763333..........33333333333333333333333333311223333333333333333 PP

  == domain 2    score: 28.7 bits;  conditional E-value: 2.9e-11
   TIGR02168 683 eleeeieeleekiaelekelkelekeleeleeeleklrkeleelerklselkkelerlekeveqleerlaqlekeleeleeereeleeeleeaeeelkeaeeeieeleaeieqlkeelkalrealseleaeltelkeeaaekeerleslekeiaalekeleeleeqieeleeeiesleaeiee.leeeleeleeeleellkekasleealaelreeleelseelrelekkvkelereleelreklaqlelrleeleveiaelqerl 947
                 ++e+ei +l++++   e ++k l+ e +  e e+++l +++  l+ ++++ +++l+ ++++ e+l++ laq+  +++el+e  + l++++++++ e+++  ee+e l++++ ++++ +++l+ +++ l+ e  +l+ e++e++ +++ le++++a++k+++el+e+++ ++++  +l +  e+ l e+ ++++++leel k+ +    +l++l+e   + +++l+++ +++ e+++e++++r++ +ql ++++ l+ve++  q +l
  MMETSP1137-20121227|9550_1 385 KHEAEIYNLQKSACHGECQIKLLQAEMRHQE-EVSQLMEDA--LKSQVQNHEQKLAVETQHKESLKSLLAQEATKNNELREDNNDLDKKMTQLDVEKARLTEEVEGLKRQLCEAESTIQTLKGEIQXLQGENLRLRLEITELRVKVKTLEEKLDAAQKQIDELKEELQAETQKRXELVKDYEKrLGEQAQAHHRALEELRKAXD---VELKKLQE---QHQTRLNDWMQQIYEARQERDAARDRATQLANECNDLRVELSAKQMAL 641
                 5677777777777777777777777655555.555554444..44699999999***************************************************************************************************************999998888888777765256666666666666666665...44443333...366666666666666666666666666666666666666666555444 PP

>> TIGR02169  SMC_prok_A: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.0  21.2   3.2e-06    0.0065     268     513 ..     182     431 ..     172     440 .. 0.71
   2 !   23.8  33.4   8.3e-10   1.7e-06     241     499 ..     384     647 ..     382     655 .] 0.82

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 3.2e-06
   TIGR02169 268 leeiekkleelnkkieklgeeeq...lavkekleelkaeiekleraiaekeeeledaeerlakaeaeidklkeeieelereieeekkereklke....elkelkeeleelraeleevdkeaaelreelkelkekleklkeelnelkreldrlleelkrleeelaelkaelerieekiaeleeeleelaeeikkaeqkleqlkedlekaekelrklkeeleklekelselerelaeleaqakaseeesreskav 513
                  e+i+++le++ ++i++l  +++       ++l  l+ +i  l    +    e + ae+ +++ae ++  +++e+++le +ie++ +  ++ ++    +++ l+e+ ++ +a++++ +++  +  e + +++ +++kl++e  +l    +  +e    +e+ ++e++a ++r+ e+++ + +++  +++ + k eq+l  +k   +k e+e+++l++   + e +++ l+ e+ + e   + +e++ ++++++
  MMETSP1137-20121227|9550_1 182 TEAIRQTLENIRAQIDSLFTGRSppeQDHAAQLLALRTDITTLAVLAEGRLAERQAAENARNEAEWQLGLKQAELAALESRIESKDRLLNSQETtfriAIAILEERARNAEARAADFEAQCGRRDEDVRNVRDEVSKLERENSSLFYSVREQKELVAAREKTIREHEATINRLXEQVTTITKDKLRAEDSLMKTEQELTGAK---SKHEAEIYNLQKSACHGECQIKLLQAEMRHQEEVSQLMEDALKSQVQN 431
                 6778888888888888877776521134456677777888888888888888888888888888888888888888888888887655444433111156667777777788888888888888888888888888888888888877777777777788888888888888888888888888888888888888876654...566677777777777777777777777777777777776665444433 PP

  == domain 2    score: 23.8 bits;  conditional E-value: 8.3e-10
   TIGR02169 241 ekiekelaeleeelekleeeieelekeleeiekkleelnkkiek..lgeeeqlavkekl.eelkaeiekleraiaekeeeledaeerlakaeaeidklkeeieelereieeekkereklkeelkelkeeleelraeleevdkeaaelreelkelkekleklkeelnelk.reldrlleelkrleeelaelkaelerieeki.aeleeeleelaeeikkaeqkleqlkedlekaekelrklkeeleklekelselerelaeleaq 499
                 +k e+e+ +l+++  + e +i+ l++e+ + e++ + ++  +++  +  e++lav ++  e+lk+ +++   + +e +e+ +d++++  ++++e  +l ee+e l+r++ e +   + lk e++ l+ e   lr e+ e+  + ++l e+l+++++++++lkeel+    +  +  ++  krl e+ + ++ +le+++++   el++ +e+ + +++   q++ ++++++++a+++  +l +e ++l  els+++  l+ +  +
  MMETSP1137-20121227|9550_1 384 SKHEAEIYNLQKSACHGECQIKLLQAEMRHQEEVSQLMEDALKSqvQNHEQKLAVETQHkESLKSLLAQEATKNNELREDNNDLDKKMTQLDVEKARLTEEVEGLKRQLCEAESTIQTLKGEIQXLQGENLRLRLEITELRVKVKTLEEKLDAAQKQIDELKEELQAETqKRXELVKDYEKRLGEQAQAHHRALEELRKAXdVELKKLQEQHQTRLNDWMQQIYEARQERDAARDRATQLANECNDLRVELSAKQMALDLAMNR 647
                 566777777888777777777777777666655544444444430034566677766552678999999999999999999***********************************************************************************9865504555567888999999999999**9998765279**************************************************9999877655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (655 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       601  (0.146514); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                        18  (0.0043881); expected 4.1 (0.001)
Passed Fwd filter:                        10  (0.00243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.08u 0.14s 00:00:01.22 Elapsed: 00:00:01.24
# Mc/sec: 697.20
//
Query:       MMETSP1137-20121227|9551_1  [L=68]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (68 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        73  (0.0177962); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.17s 00:00:00.29 Elapsed: 00:00:00.24
# Mc/sec: 373.97
//
Query:       MMETSP1137-20121227|9552_1  [L=45]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (45 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        30  (0.00731351); expected 82.0 (0.02)
Passed bias filter:                       27  (0.00658216); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.12s 00:00:00.23 Elapsed: 00:00:00.30
# Mc/sec: 197.98
//
Query:       MMETSP1137-20121227|9554_1  [L=307]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00018   17.7   0.0    0.00053   16.1   0.0    1.6  1  TIGR04075 bacter_Pnkp: polynucleotide kinase-phosphatase


Domain annotation for each model (and alignments):
>> TIGR04075  bacter_Pnkp: polynucleotide kinase-phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0   1.3e-07   0.00053     173     268 ..      40     122 ..       4     127 .. 0.68

  Alignments for each domain:
  == domain 1    score: 16.1 bits;  conditional E-value: 1.3e-07
   TIGR04075 173 ndkrdekGPfdiiGdvhGCldeleelleklGyeveeeeegkavevthpegrkavflGdlvdrGpdspdvlrlvmsm.vk.agaalcvpGnheekllrk 268
                 ++ ++   P  i Gd+hG + +l+el++ +G  v ++              + +f+Gd+vdrG  s++++ l  ++ v+  ++   ++Gnhe++ + +
  MMETSP1137-20121227|9554_1  40 SNVQRVDAPVTICGDIHGQFYDLKELFK-VGGDVPDT--------------NYLFMGDFVDRGFYSVETFLLLLALkVRyPDRITLIRGNHESRQITQ 122
                 344556789***************9975.45444433..............359************998766554425515677789*****986655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (307 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       119  (0.0290102); expected 82.0 (0.02)
Passed bias filter:                      117  (0.0285227); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.29u 0.18s 00:00:00.47 Elapsed: 00:00:00.56
# Mc/sec: 710.89
//
Query:       MMETSP1137-20121227|9555_1  [L=102]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (102 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        44  (0.0107265); expected 82.0 (0.02)
Passed bias filter:                       44  (0.0107265); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.13s 00:00:00.26 Elapsed: 00:00:00.39
# Mc/sec: 345.20
//
Query:       MMETSP1137-20121227|9556_1  [L=138]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (138 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        38  (0.00926377); expected 82.0 (0.02)
Passed bias filter:                       37  (0.00901999); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.14s 00:00:00.30 Elapsed: 00:00:00.37
# Mc/sec: 492.28
//
Query:       MMETSP1137-20121227|9557_1  [L=63]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (63 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        50  (0.0121892); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.15s 00:00:00.26 Elapsed: 00:00:00.31
# Mc/sec: 268.24
//
Query:       MMETSP1137-20121227|9558_1  [L=157]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (157 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       306  (0.0745978); expected 82.0 (0.02)
Passed bias filter:                      192  (0.0468064); expected 82.0 (0.02)
Passed Vit filter:                        22  (0.00536324); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.11s 00:00:00.32 Elapsed: 00:00:00.92
# Mc/sec: 225.24
//
Query:       MMETSP1137-20121227|9559_1  [L=145]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (145 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        59  (0.0143832); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.12s 00:00:00.27 Elapsed: 00:00:00.27
# Mc/sec: 708.83
//
Query:       MMETSP1137-20121227|9561_1  [L=520]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (520 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        70  (0.0170648); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.12s 00:00:00.46 Elapsed: 00:00:00.47
# Mc/sec: 1460.30
//
Query:       MMETSP1137-20121227|9562_1  [L=200]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (200 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       156  (0.0380302); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.13s 00:00:00.32 Elapsed: 00:00:00.33
# Mc/sec: 799.93
//
Query:       MMETSP1137-20121227|9563_1  [L=409]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (409 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       106  (0.0258411); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.14s 00:00:00.48 Elapsed: 00:00:00.56
# Mc/sec: 963.99
//
Query:       MMETSP1137-20121227|9565_1  [L=221]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (221 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       127  (0.0309605); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.15s 00:00:00.35 Elapsed: 00:00:00.39
# Mc/sec: 747.94
//
Query:       MMETSP1137-20121227|9566_1  [L=665]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (665 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        67  (0.0163335); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.16s 00:00:00.56 Elapsed: 00:00:00.65
# Mc/sec: 1350.35
//
Query:       MMETSP1137-20121227|9567_1  [L=288]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.2e-05   22.2   0.1      0.054   11.4   0.0    4.5  6  TIGR02276 beta_rpt_yvtn: 40-residue YVTN family beta-propeller repeat


Domain annotation for each model (and alignments):
>> TIGR02276  beta_rpt_yvtn: 40-residue YVTN family beta-propeller repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    2.3   0.0    0.0088        36       5      22 ..      42      59 ..      41      65 .. 0.85
   2 ?    1.8   0.0     0.013        52       2      13 ..      80      91 ..      80      95 .. 0.85
   3 !   11.4   0.0   1.3e-05     0.054       4      23 ..     129     148 ..     127     150 .. 0.91
   4 ?   -3.0   0.0      0.39   1.6e+03      13      23 ..     175     185 ..     174     188 .. 0.65
   5 ?   -1.4   0.0      0.13   5.4e+02       3      18 ..     222     237 ..     221     239 .. 0.86
   6 ?   -2.2   0.0      0.23   9.5e+02       5      16 ..     267     278 ..     266     281 .. 0.72

  Alignments for each domain:
  == domain 1    score: 2.3 bits;  conditional E-value: 0.0088
   TIGR02276  5 kvYVtNsgSnsVsVIDta 22
                 v V++sg++ +  +D +
  MMETSP1137-20121227|9567_1 42 NVLVADSGNDRLQLLDSE 59
                589*******99999876 PP

  == domain 2    score: 1.8 bits;  conditional E-value: 0.013
   TIGR02276  2 dGtkvYVtNsgS 13
                dGt++ V++s +
  MMETSP1137-20121227|9567_1 80 DGTHIWVADSAN 91
                8********987 PP

  == domain 3    score: 11.4 bits;  conditional E-value: 1.3e-05
   TIGR02276   4 tkvYVtNsgSnsVsVIDtaT 23 
                 ++++V+++g+n ++V+D++ 
  MMETSP1137-20121227|9567_1 129 GRLFVADEGNNRIVVLDASS 148
                 689**************986 PP

  == domain 4    score: -3.0 bits;  conditional E-value: 0.39
   TIGR02276  13 SnsVsVIDtaT 23 
                 ++ ++V Dt++
  MMETSP1137-20121227|9567_1 175 DDELYVRDTNN 185
                 56777777763 PP

  == domain 5    score: -1.4 bits;  conditional E-value: 0.13
   TIGR02276   3 GtkvYVtNsgSnsVsV 18 
                 ++k+ V+  g + V V
  MMETSP1137-20121227|9567_1 222 NNKLLVAEAGAGRVQV 237
                 899****999998877 PP

  == domain 6    score: -2.2 bits;  conditional E-value: 0.23
   TIGR02276   5 kvYVtNsgSnsV 16 
                 + YV++ g   V
  MMETSP1137-20121227|9567_1 267 RAYVADYGKHQV 278
                 67***9986655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (288 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        70  (0.0170648); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.25u 0.18s 00:00:00.43 Elapsed: 00:00:00.43
# Mc/sec: 884.02
//
Query:       MMETSP1137-20121227|9569_1  [L=84]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (84 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       124  (0.0302292); expected 82.0 (0.02)
Passed bias filter:                      111  (0.02706); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.13s 00:00:00.26 Elapsed: 00:00:00.26
# Mc/sec: 426.43
//
Query:       MMETSP1137-20121227|9570_1  [L=253]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (253 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        60  (0.014627); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.14s 00:00:00.35 Elapsed: 00:00:00.33
# Mc/sec: 1011.92
//
Query:       MMETSP1137-20121227|9571_1  [L=240]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00071   16.9   0.1      0.001   16.4   0.1    1.2  1  TIGR00384 dhsB: succinate dehydrogenase and fumarate reductase iron-sulfur protein
     0.0021   15.8   0.1     0.0041   14.9   0.1    1.4  1  TIGR03193 4hydroxCoAred: 4-hydroxybenzoyl-CoA reductase, gamma subunit
     0.0023   13.8   0.3     0.0032   13.4   0.2    1.1  1  TIGR03311 Se_dep_Molyb_1: selenium-dependent molybdenum hydroxylase 1
     0.0089   12.7   0.3      0.016   11.8   0.0    1.5  2  TIGR02160 PA_CoA_Oxy5: phenylacetate-CoA oxygenase/reductase, PaaK subunit
  ------ inclusion threshold ------
      0.014   12.7   0.1      0.022   12.0   0.1    1.3  1  TIGR03198 pucE: xanthine dehydrogenase E subunit
      0.033   11.8   0.1      0.066   10.9   0.1    1.5  1  TIGR02008 fdx_plant: ferredoxin [2Fe-2S]


Domain annotation for each model (and alignments):
>> TIGR00384  dhsB: succinate dehydrogenase and fumarate reductase iron-sulfur protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.1   1.5e-06     0.001      46      73 ..     110     137 ..      89     152 .. 0.83

  Alignments for each domain:
  == domain 1    score: 16.4 bits;  conditional E-value: 1.5e-06
   TIGR00384  46 RksCReaiCGscavkvngkpkLACktkv 73 
                 +  C+++ CG cav+vng+    C  +v
  MMETSP1137-20121227|9571_1 110 KYKCKKGECGTCAVRVNGEWIRTCSVTV 137
                 447****************999999877 PP

>> TIGR03193  4hydroxCoAred: 4-hydroxybenzoyl-CoA reductase, gamma subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.1     6e-06    0.0041      34      61 ..     109     136 ..      98     156 .. 0.86

  Alignments for each domain:
  == domain 1    score: 14.9 bits;  conditional E-value: 6e-06
   TIGR03193  34 vkqgcdggecgactvlvdgeprlacltl 61 
                 +k  c  gecg+c+v v+ge   +c++ 
  MMETSP1137-20121227|9571_1 109 IKYKCKKGECGTCAVRVNGEWIRTCSVT 136
                 6889*****************9999864 PP

>> TIGR03311  Se_dep_Molyb_1: selenium-dependent molybdenum hydroxylase 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.2   4.6e-06    0.0032      31      60 ..     109     138 ..     102     152 .. 0.89

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 4.6e-06
   TIGR03311  31 vknGcaeGacGactvlvnGkavkaclftve 60 
                 +k  c++G cG+c v vnG  +++c +tv 
  MMETSP1137-20121227|9571_1 109 IKYKCKKGECGTCAVRVNGEWIRTCSVTVP 138
                 5788*********************99985 PP

>> TIGR02160  PA_CoA_Oxy5: phenylacetate-CoA oxygenase/reductase, PaaK subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.8   0.0   2.4e-05     0.016     282     312 ..      95     125 ..      68     132 .. 0.75
   2 ?   -3.1   0.0      0.84   5.7e+02     181     195 ..     193     207 ..     189     218 .. 0.78

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 2.4e-05
   TIGR02160 282 desvldaalraradlPfackgGvcgtcrakv 312
                  + +  +a +a++ + + ck G cgtc ++v
  MMETSP1137-20121227|9571_1  95 GQPLSAVAAQAGQFIKYKCKKGECGTCAVRV 125
                 444556899******************9887 PP

  == domain 2    score: -3.1 bits;  conditional E-value: 0.84
   TIGR02160 181 eaellsGrldgeklk 195
                  +++++ r+++e+l 
  MMETSP1137-20121227|9571_1 193 GKKVFNDRIEAERLL 207
                 467999999999984 PP

>> TIGR03198  pucE: xanthine dehydrogenase E subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.1   3.3e-05     0.022      37      62 ..     110     135 ..      98     153 .. 0.83

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 3.3e-05
   TIGR03198  37 kvscgigrcgacavlvdgkvanacll 62 
                 k  c+ g cg+cav v+g    +c +
  MMETSP1137-20121227|9571_1 110 KYKCKKGECGTCAVRVNGEWIRTCSV 135
                 789****************9999954 PP

>> TIGR02008  fdx_plant: ferredoxin [2Fe-2S]
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.1   9.7e-05     0.066      28      53 ..     101     126 ..      82     135 .. 0.87

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 9.7e-05
   TIGR02008  28 aaeeeGidlpyscraGacstcaGkvk 53 
                 +a ++G  + y c+ G c tca +v+
  MMETSP1137-20121227|9571_1 101 VAAQAGQFIKYKCKKGECGTCAVRVN 126
                 677889999*************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (240 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       135  (0.0329108); expected 82.0 (0.02)
Passed bias filter:                      104  (0.0253535); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.24u 0.17s 00:00:00.41 Elapsed: 00:00:00.34
# Mc/sec: 931.69
//
Query:       MMETSP1137-20121227|9572_1  [L=63]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (63 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        30  (0.00731351); expected 82.0 (0.02)
Passed bias filter:                       24  (0.0058508); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.15s 00:00:00.29 Elapsed: 00:00:00.64
# Mc/sec: 129.93
//
Query:       MMETSP1137-20121227|9573_1  [L=71]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (71 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        72  (0.0175524); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                        18  (0.0043881); expected 4.1 (0.001)
Passed Fwd filter:                         8  (0.00195027); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.16s 00:00:00.35 Elapsed: 00:00:00.32
# Mc/sec: 292.85
//
Query:       MMETSP1137-20121227|9574_1  [L=410]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.9e-21   73.5   0.1    2.6e-21   73.1   0.1    1.1  1  TIGR03903 TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
      2e-09   35.0   0.4    3.8e-09   34.1   0.2    1.4  1  TIGR03724 arch_bud32: Kae1-associated kinase Bud32
     0.0037   15.0   0.0     0.0073   14.0   0.0    1.4  1  TIGR02172 Fb_sc_TIGR02172: fibrobacter succinogenes paralogous family TIGR02172


Domain annotation for each model (and alignments):
>> TIGR03903  TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.1   0.1   1.9e-24   2.6e-21       6     180 ..      74     246 ..      61     259 .. 0.81

  Alignments for each domain:
  == domain 1    score: 73.1 bits;  conditional E-value: 1.9e-24
   TIGR03903   6 vaikllRedaaeeerlvaRFrReialCarLshPnivaLlDsGeaedgllFavFeyveGrtlrevLaadGaLpaaetg.rLmlqvLDalaaahdaGvvhRDLkPqnimvsaadveshakvLDFGigaLlpgvedadeatltrttevlGsPaYaaPeqL...Rge..pvtaksDlYaWGLivl 180
                  a k+l +   e+    a   Re ++   L+hPniv++ +  e++  +l  v  +  G  l +++a +  + +++ + r +  +L a+   hd+GvvhRDLkP+ni++s +  + h  + DFG+g  + +  +         + v G+ +Y aPe +   Rge      + D++  GLi +
  MMETSP1137-20121227|9574_1  74 FAAKILDKRLEEHREDYASMMREFEVLRSLRHPNIVRMEEAYETPT-YLILVCQLARGGELMHRIAEENHVYTEDEVrRHVETILQAIQFMHDKGVVHRDLKPENILLSDKTAHAHILIADFGLGRFVQNGSELL-------ETVCGTHHYLAPELVqcdRGEreGYSKAVDVWGVGLIAF 246
                 567777777667888899*******************998888887.9999***************99988777766156788**************************99999999999*******99999933.......336777777788754334555114566777777778765 PP

>> TIGR03724  arch_bud32: Kae1-associated kinase Bud32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.1   0.2   2.8e-12   3.8e-09      14     140 ..      58     201 ..      50     214 .. 0.69

  Alignments for each domain:
  == domain 1    score: 34.1 bits;  conditional E-value: 2.8e-12
   TIGR03724  14 eflglkavvKeRvkKsYrh.pelDeklrkeR.....trkEarllseakkagvntPvvydvdpeekkivmeyiegkklkdlleekel........ellkevGelvgklHkagivhgDlttsNiivk....ddklyliDfGLgkksk 140
                 +f+  k +v++R + +Y   + lD++l ++R     + +E+ +l+++++  +        +p   ++v +  +g +l + + e+++        ++++++ +++  +H++g+vh Dl ++Ni+++    + ++++ DfGLg++ +
  MMETSP1137-20121227|9574_1  58 HFAKVK-LVRHRQSGEYFAaKILDKRLEEHRedyasMMREFEVLRSLRHPNIVRMEEAYETPTYLILVCQLARGGELMHRIAEENHvytedevrRHVETILQAIQFMHDKGVVHRDLKPENILLSdktaHAHILIADFGLGRFVQ 201
                 555544.56777777776515689999999944444456777777766655433222222334456677777766666665555555888888899999*************************734434567888*****9855 PP

>> TIGR02172  Fb_sc_TIGR02172: fibrobacter succinogenes paralogous family TIGR02172
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.0   5.3e-06    0.0073     122     185 ..     132     199 ..     123     208 .. 0.80

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 5.3e-06
   TIGR02172 122 ekirklieekkfv.pddykeklralieevp..dtktClhgDlqignlivdgkr.tywiDlGeFgyGsp 185
                 e+++++ ee+++   d+++ ++  +++ ++  + k+ +h Dl++ n++ ++k+   +i + +Fg G  
  MMETSP1137-20121227|9574_1 132 ELMHRIAEENHVYtEDEVRRHVETILQAIQfmHDKGVVHRDLKPENILLSDKTaHAHILIADFGLGRF 199
                 6777888877765156788888888887763356799****************7789*******9975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (410 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       140  (0.0341297); expected 82.0 (0.02)
Passed bias filter:                      122  (0.0297416); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.37u 0.16s 00:00:00.53 Elapsed: 00:00:00.53
# Mc/sec: 1021.05
//
Query:       MMETSP1137-20121227|9575_1  [L=190]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.3e-06   23.2   1.0    4.4e-06   23.2   0.0    1.5  2  TIGR01389 recQ: ATP-dependent DNA helicase RecQ
  ------ inclusion threshold ------
      0.014   12.0   0.0      0.022   11.3   0.0    1.3  1  TIGR00614 recQ_fam: ATP-dependent DNA helicase, RecQ family


Domain annotation for each model (and alignments):
>> TIGR01389  recQ: ATP-dependent DNA helicase RecQ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.2   0.0   2.2e-09   4.4e-06     253     333 ..       3      83 ..       1     109 [. 0.86
   2 ?   -2.3   0.4      0.12   2.4e+02     482     504 ..     142     164 ..     115     186 .. 0.43

  Alignments for each domain:
  == domain 1    score: 23.2 bits;  conditional E-value: 2.2e-09
   TIGR01389 253 aYhaGlskkvRaeaqekFleddvkvvvatvaFGmGidksdvRfvihldlPknlesyyqeaGRaGRDGlkaeaillyseaDl 333
                  Yh+ + ++ R +++++Fl+   + +vat     G+  +  ++++ +d P+    y    GR  R G   +   l  +++ 
  MMETSP1137-20121227|9575_1   3 GYHSMMPSQLRRDSLQAFLNGTYTYLVATDIAARGLHMPKLKHIVNFDFPATSSLYLHRCGRTARMGSSGKVTSLVMKRES 83 
                 5*****************************************************************998776666555554 PP

  == domain 2    score: -2.3 bits;  conditional E-value: 0.12
   TIGR01389 482 qleeavkkvlkeevevllrekkv 504
                 + +ea+++  +++++v+++++ +
  MMETSP1137-20121227|9575_1 142 HVKEASRQEKRGKRQVVMAKSYR 164
                 22333333333333333333322 PP

>> TIGR00614  recQ_fam: ATP-dependent DNA helicase, RecQ family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   1.1e-05     0.022     255     326 ..       3      74 ..       1      99 [. 0.90

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 1.1e-05
   TIGR00614 255 aYhagleesarkevqkkflrdeiqvvvatvafGmGinkpdvRfvihyslpksiesYYqesGRaGRDglksec 326
                  Yh+ + ++ r++  + fl+     +vat     G+  p +++++ ++ p     Y    GR  R g   + 
  MMETSP1137-20121227|9575_1   3 GYHSMMPSQLRRDSLQAFLNGTYTYLVATDIAARGLHMPKLKHIVNFDFPATSSLYLHRCGRTARMGSSGKV 74 
                 7****************************9999*******************************99877665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (190 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       160  (0.0390054); expected 82.0 (0.02)
Passed bias filter:                      116  (0.0282789); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.21u 0.18s 00:00:00.39 Elapsed: 00:00:00.39
# Mc/sec: 643.02
//
Query:       MMETSP1137-20121227|9576_1  [L=72]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        37  (0.00901999); expected 82.0 (0.02)
Passed bias filter:                       24  (0.0058508); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.16s 00:00:00.27 Elapsed: 00:00:00.33
# Mc/sec: 287.98
//
Query:       MMETSP1137-20121227|9577_1  [L=121]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (121 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       132  (0.0321794); expected 82.0 (0.02)
Passed bias filter:                      116  (0.0282789); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.13s 00:00:00.28 Elapsed: 00:00:00.30
# Mc/sec: 532.36
//
Query:       MMETSP1137-20121227|9578_1  [L=162]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.7e-18   62.6   1.2    1.3e-17   62.0   0.8    1.2  1  TIGR02970 succ_dehyd_cytB: succinate dehydrogenase, cytochrome b556 subunit


Domain annotation for each model (and alignments):
>> TIGR02970  succ_dehyd_cytB: succinate dehydrogenase, cytochrome b556 subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.0   0.8   3.1e-21   1.3e-17       3     118 ..      37     152 ..      35     154 .. 0.90

  Alignments for each domain:
  == domain 1    score: 62.0 bits;  conditional E-value: 3.1e-21
   TIGR02970   3 rPlsldLqiyrlpitailsilHRitGvllflglllllwllslsllseesfatlsallssilvklllvgllaallyHllnGiRhLllDlg.vglelkeakisakvvlvlslvltvllg 118
                 rPls++L+iyrlp+ a++s++ RitG++l  g+  ++  + l+  +  + +t+sa+ ss+++ ++ +++ + ++yH++   Rh ++D+   g++ +   +s+ +++ ++ v++++l 
  MMETSP1137-20121227|9578_1  37 RPLSPHLTIYRLPLIAWSSVTVRITGMALSAGVAGIAG-VTLLKGGDTVTETASAIGSSAIGPFAKFTVAFPIVYHVFGAMRHAVWDTTaKGFTNQMMLQSSYAIFGATTVASLALA 152
                 9******************************9987765.56677888888*************************************761569999999999999999999988765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (162 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       163  (0.0397367); expected 82.0 (0.02)
Passed bias filter:                      103  (0.0251097); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.18u 0.14s 00:00:00.32 Elapsed: 00:00:00.38
# Mc/sec: 562.69
//
Query:       MMETSP1137-20121227|9581_1  [L=729]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (729 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        94  (0.0229157); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.16s 00:00:00.60 Elapsed: 00:00:00.61
# Mc/sec: 1577.38
//
Query:       MMETSP1137-20121227|9582_1  [L=218]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (218 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        62  (0.0151146); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.12s 00:00:00.31 Elapsed: 00:00:00.31
# Mc/sec: 928.18
//
Query:       MMETSP1137-20121227|9583_1  [L=165]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (165 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       153  (0.0372989); expected 82.0 (0.02)
Passed bias filter:                      120  (0.029254); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.15s 00:00:00.32 Elapsed: 00:00:00.37
# Mc/sec: 588.60
//
Query:       MMETSP1137-20121227|9584_1  [L=251]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.3e-19   68.1   0.5    3.2e-19   66.8   0.1    1.8  2  TIGR00090 iojap_ybeB: iojap-like ribosome-associated protein


Domain annotation for each model (and alignments):
>> TIGR00090  iojap_ybeB: iojap-like ribosome-associated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.8   0.1   7.8e-23   3.2e-19       3      99 .]      35     135 ..      33     135 .. 0.92
   2 ?   -1.7   0.0      0.17   7.1e+02       8      24 ..     144     160 ..     140     166 .. 0.79

  Alignments for each domain:
  == domain 1    score: 66.8 bits;  conditional E-value: 7.8e-23
   TIGR00090   3 elivealedkkaedivvldvrekssiadyfviasgeserqvkaladeveeelkekgl....kplrvegkeegeWvlvDlgdvvvhifqeeaRefYdLEklw 99 
                 + + + le + a+div++d  + ss+ d++v ++++s+ +++ la +v+ e+k++g+    +  ++eg+e+ +WvlvD g+v+v+++ ++aR   dLE +w
  MMETSP1137-20121227|9584_1  35 DDVKSWLESELASDIVIMDTLGDSSVGDWLVFCTAQSRAHMQRLATAVTYEMKHRGVllrgEAPTMEGSESDDWVLVDGGHVIVNVMLQKARWELDLEGIW 135
                 567889999********************************************9997333345679**********************************9 PP

  == domain 2    score: -1.7 bits;  conditional E-value: 0.17
   TIGR00090   8 aledkkaedivvldvre 24 
                   ++ ++ di  ldv++
  MMETSP1137-20121227|9584_1 144 WRSEDHGADIGSLDVAG 160
                 56788999******986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (251 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       126  (0.0307167); expected 82.0 (0.02)
Passed bias filter:                      102  (0.0248659); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.21u 0.15s 00:00:00.36 Elapsed: 00:00:00.37
# Mc/sec: 895.39
//
Query:       MMETSP1137-20121227|9585_1  [L=220]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.36    7.5   9.7       0.53    7.0   6.7    1.2  1  TIGR01843 type_I_hlyD: type I secretion membrane fusion protein, HlyD family


Domain annotation for each model (and alignments):
>> TIGR01843  type_I_hlyD: type I secretion membrane fusion protein, HlyD family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   6.7   0.00013      0.53     174     258 ..      20     104 ..       2     109 .. 0.80

  Alignments for each domain:
  == domain 1    score: 7.0 bits;  conditional E-value: 0.00013
   TIGR01843 174 eliseelealrkLkekglvsrlelLelereraelqgelaeleaeleklkaeldeleeklqeleqkfreevseelreaqarlaele 258
                 e++++ +e++ k +e+  +++l++ e+e++   ++ e +e++ e++k  a+ + +++ + e+ +k  ee+++ l ea ++l +++
  MMETSP1137-20121227|9585_1  20 EAAEKAAEIRLKAEEEFNIEKLRMVEAEKQKIRAEYERKEKQVEVQKRIAQSNTVRLGRLEALKKRDEEMQKVLAEAASKLPGIT 104
                 33444455555666677899**********************************************************9998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (220 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       394  (0.0960507); expected 82.0 (0.02)
Passed bias filter:                      179  (0.0436373); expected 82.0 (0.02)
Passed Vit filter:                        22  (0.00536324); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.26u 0.20s 00:00:00.46 Elapsed: 00:00:00.42
# Mc/sec: 691.37
//
Query:       MMETSP1137-20121227|9586_1  [L=502]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      6e-97  323.1   0.0    7.4e-97  322.8   0.0    1.0  1  TIGR00234 tyrS: tyrosine--tRNA ligase


Domain annotation for each model (and alignments):
>> TIGR00234  tyrS: tyrosine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  322.8   0.0  1.8e-100   7.4e-97       5     404 ..      83     499 ..      79     501 .. 0.93

  Alignments for each domain:
  == domain 1    score: 322.8 bits;  conditional E-value: 1.8e-100
   TIGR00234   5 nilkelkkrgleeivseeeeelekklkk...........neklklylGvdPtaqslHlGhlvplkkLrdfqqaGhevvvligdataligdpsgkkevrkvleeeevqenaesikkqlarfldfd..kgklkfvnnsewlkklnyldfirdlgkifsvnrmlardafssRleen.glslsefiYpllQayDfvaLdkd...dlqlGGsDQwgNilagidLirrnlpskkqfgltvpLltkadGekmGkseggavsldes..spydfyqkvintpdelvkkilklftflgleeieklveek.spslrevkellakeitklvhgeeaaekaealseaifsrn......lvpdelkikrlekfggeielidllvksklvksksearrdikqggvkingekvkdleqilkeae.ekrvlvlrvGKkkflrie 404
                 + lk+l++rg+  ++++  e+l++kl              e++ +ylG+d+ta+slH+G l++++ Lr++q  Gh+++vl+g+ t ++gdpsgk++ r++l+e  +q+n + i++ +++fl f   + ++++vnn ewl+ l yldf+r+ g++f++nrml+ +++++Rle++ +ls+ ef+       Df  L++     lq+GGsDQwgNi+ g++L rr     + fglt+pLlt++dG+kmGk+++gav+l+ +   p++ +q+++n++d++v ++l +ft+l  +ei +  e   +++++e+k  la e+t+++hgee  e+ +a+++a+f+++      ++p  ++  + +++g  + +idl v  ++ kskse rr i++gg k+n++k++  + ++++    + +l l  GKkk  ++e
  MMETSP1137-20121227|9586_1  83 EFLKTLQWRGFIHQATD-MEALDEKLGAgepvvakklgaGEPVVAYLGFDATASSLHVGSLLQIMLLRHYQRCGHKPIVLVGGGTTKVGDPSGKDASRQLLDEAAIQSNIDGISQVFSKFLTFGdgPTDAIMVNNDEWLSPLRYLDFLREYGRHFTINRMLNFESVKQRLEREsPLSFLEFN------XDFLELNRRhsaVLQFGGSDQWGNIINGVELGRRVDGV-SLFGLTAPLLTTSDGKKMGKTASGAVWLNADllPPFEYWQYWRNVADADVGRFLRIFTELPRAEIXAALEALpGAEINEAKVVLANEVTRMLHGEECIEQIQATAAALFGGGntadtdALPR-IQ-VKAAEIGDGVPVIDLFVSLEFAKSKSEVRRLISGGGAKLNDAKIERADTVVTRDTfSEGELKLSAGKKKHGIVE 499
                 77899999******999.9999999987899999999999***********************************************************************************769999****************************************************8......89*****999999************************7.89******************************9*********************************9999999*************************************998855432222.33.334455566****************************************999988777889999****987665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (502 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       111  (0.02706); expected 82.0 (0.02)
Passed bias filter:                      102  (0.0248659); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.15s 00:00:00.52 Elapsed: 00:00:00.49
# Mc/sec: 1352.21
//
Query:       MMETSP1137-20121227|9587_1  [L=447]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.013   11.0  30.8      0.018   10.6  21.4    1.1  1  TIGR02168 SMC_prok_B: chromosome segregation protein SMC
        6.7    2.0  29.9          9    1.6  20.7    1.0  1  TIGR02169 SMC_prok_A: chromosome segregation protein SMC


Domain annotation for each model (and alignments):
>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6  21.4   8.7e-06     0.018     260     946 ..     171     348 ..     142     388 .. 0.30

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 8.7e-06
   TIGR02168 260 aelkeleeeleelrlekseleeeleelqkelqelkaeisrleqeieilkerleqlekeleeleeqleeleskkeeleeelaeleeeleelkeelesleaeleeaeaeleelesrleeleeeleelrsevaeleeqlaslnaelerleaeleqleerrerlkqeieelekkleeaeaelkelqeeleeleeeleeleeelerleealeeleeeleeaeqalqkaeeelaqlqarlesleslqenleglsegvkallknksklagilgvlselieveekyeaAieaalgerlqavvveneeaakkaiealkknelGrvtflpldvikgaeieaseaevlkseegvlgvakdlvkvdeklekalealLggvlvvddldsAlelakklraeerivtldGelvrrggvitggsektessilerkkeieeleeeieeleekiaelekelkelekeleeleeeleklrkeleelerklselkkelerlekeveqleerlaqlekeleeleeereeleeeleeaeeelkeaeeeieeleaeieqlkeelkalrealseleaelt.elkeeaaekeerleslekeiaalekeleeleeqieeleeeiesleaeieeleeeleeleeeleellkekasleealaelreeleelseelrelekkvkelereleelreklaqlelrleeleveiaelqer 946
                 +e +e+e                                                                                                                                                                                                                                                                                                                                                                                                                   ++ s+                                                                                                          e ee + e  a ieq+ +el+ +   +++++   +  l+++ + ++ +l+   ++ aa + e++ ++e++++ ++++e+lea+i+e+e+  e++ +e++ l++  ++ e +l ++r + +e++++ + l+ +++++++e++++ ++ ++++ + + + v+  e ++r
  MMETSP1137-20121227|9587_1 171 REQSEAE-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------RKRSR---------------------------------------------------------------------------------------------------------LEREEGLRETHALIEQQAAELSVQ--GFAAASGVCErGLEQQSEGLRAQLAAAAEQSAAHASEARAATEAAARSAAQVERLEAAIAEAEAVTEQHIAEIQGLKQLLQRDEDELCAARVAADEARRDNEVLRAQLDAKDAEISAAAARAEAAKSEESVTAVQQVEELQR 348
                 1111111...................................................................................................................................................................................................................................................................................................................................................................................................................11111.........................................................................................................111222222222222222222111..1111111111112222222222222222222223333333333333333333333333333333333333333333333333333333333333333333333333333333322222222222222222222222211111 PP

>> TIGR02169  SMC_prok_A: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6  20.7    0.0044         9     322     516 ..     150     343 ..     145     358 .. 0.71

  Alignments for each domain:
  == domain 1    score: 1.6 bits;  conditional E-value: 0.0044
   TIGR02169 322 eerlakaeaeidklkeeieelereieeekkereklkeelkelkeeleelraeleevdkeaaelree..lkelkekleklkeelnelkreldrlleelkrleeelaelkaelerieekiaeleeeleelaeeikkaeqkleqlkedlekaekelrklkeeleklekelselerelaeleaqakaseeesreskaveev 516
                 e+ +a + a  ++ ++ +++l+++   e+ ++++  e+ + l+e+ + ++++++e++ +  ++        l+++ e l+ +l     +      e++ ++e+ a+  a++er+e++iae e+ +e+  +ei+  +q l++ +++l +a+    + + + e l  +l ++  e++++ a+a+a+++e+ +  av++v
  MMETSP1137-20121227|9587_1 150 EAAEAALRASKEAADAAATALREQS--EAERKRSRLEREEGLRETHALIEQQAAELSVQGFAAASGvcERGLEQQSEGLRAQLAAAAEQSAAHASEARAATEAAARSAAQVERLEAAIAEAEAVTEQHIAEIQGLKQLLQRDEDELCAARVAADEARRDNEVLRAQLDAKDAEISAAAARAEAAKSEE-SVTAVQQV 343
                 3333333333333344444444333..33444444556677888888888888888877544444400455688888888888888877788888888899999999999999999999999999999999999999999999999999999999999999999999999999999999888887777.55555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (447 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       358  (0.0872745); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.18s 00:00:00.59 Elapsed: 00:00:00.60
# Mc/sec: 983.32
//
Query:       MMETSP1137-20121227|9588_1  [L=205]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0099   13.9   0.1      0.026   12.5   0.0    1.7  2  TIGR01690 ICE_RAQPRD: integrative conjugative element protein, RAQPRD family
  ------ inclusion threshold ------
      0.077   10.7   3.1      0.084   10.5   0.0    2.2  3  TIGR03042 PS_II_psbQ_bact: photosystem II protein PsbQ


Domain annotation for each model (and alignments):
>> TIGR01690  ICE_RAQPRD: integrative conjugative element protein, RAQPRD family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0      0.99     2e+03      21      25 ..      27      31 ..       9      45 .. 0.48
   2 !   12.5   0.0   1.3e-05     0.026      12      70 ..      73     140 ..      63     147 .. 0.79

  Alignments for each domain:
  == domain 1    score: -3.2 bits;  conditional E-value: 0.99
   TIGR01690 21 seree 25
                ++++ 
  MMETSP1137-20121227|9588_1 27 NQQQG 31
                22222 PP

  == domain 2    score: 12.5 bits;  conditional E-value: 1.3e-05
   TIGR01690  12 aaaaladsasereeLaavirqLdalerlaeraaaaakqseke.........RyhfDYarlraDlkrir 70 
                 ++ + a+++ e  +  +v++ L a+++  ++a++ a+q e +         R  fD+++lr+Dl+ + 
  MMETSP1137-20121227|9588_1  73 TKPQDAEKDDELLATDEVQKGLSAVKAYRQTASKLASQFEADpnmplipalRKEFDFSKLRTDLNVVT 140
                 4445555556666667899***************99998776777888999*************9886 PP

>> TIGR03042  PS_II_psbQ_bact: photosystem II protein PsbQ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.0   0.1     0.073   1.5e+02      15      41 ..       8      35 ..       5      49 .. 0.72
   2 ?   -2.9   0.1      0.56   1.2e+03     130     138 ..      93     101 ..      75     113 .. 0.49
   3 ?   10.5   0.0   4.1e-05     0.084      77     134 ..     131     190 ..     129     201 .. 0.80

  Alignments for each domain:
  == domain 1    score: 0.0 bits;  conditional E-value: 0.073
   TIGR03042 15 l.Lvscsgpaaakpatyspedlekiqrq 41
                l Lvscs+  + +p+   +++ + + rq
  MMETSP1137-20121227|9588_1  8 LsLVSCSLALTPTPTPLAQNQQQGLARQ 35
                4499999999888887777776666555 PP

  == domain 2    score: -2.9 bits;  conditional E-value: 0.56
   TIGR03042 130 vaadldayl 138
                   + ++ay+
  MMETSP1137-20121227|9588_1  93 GLSAVKAYR 101
                 333333322 PP

  == domain 3    score: 10.5 bits;  conditional E-value: 4.1e-05
   TIGR03042  77 evrremtylnqsLlpkdkkeakklakelkedLeklDeAAklqdks..eaqkayqevaadl 134
                 ++r +++ ++   +++ + + +++ +++  dL +l +A++l+ ++  +  k+ ++v + +
  MMETSP1137-20121227|9588_1 131 KLRTDLNVVTTVFDDTTQGTTDRVIRAILYDLTELETASRLKKGEteRTPKKIANVNKWF 190
                 6899***********************************998765114445555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (205 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       119  (0.0290102); expected 82.0 (0.02)
Passed bias filter:                      110  (0.0268162); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.19u 0.11s 00:00:00.30 Elapsed: 00:00:01.74
# Mc/sec: 155.50
//
Query:       MMETSP1137-20121227|9589_1  [L=189]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (189 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       140  (0.0341297); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.15s 00:00:00.35 Elapsed: 00:00:00.56
# Mc/sec: 445.46
//
Query:       MMETSP1137-20121227|9590_1  [L=225]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (225 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        62  (0.0151146); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.18s 00:00:00.39 Elapsed: 00:00:00.38
# Mc/sec: 781.51
//
Query:       MMETSP1137-20121227|9591_1  [L=137]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (137 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        51  (0.012433); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.18s 00:00:00.34 Elapsed: 00:00:00.31
# Mc/sec: 583.31
//
Query:       MMETSP1137-20121227|9592_1  [L=48]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (48 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        36  (0.00877621); expected 82.0 (0.02)
Passed bias filter:                       33  (0.00804486); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.24
# Mc/sec: 263.98
//
Query:       MMETSP1137-20121227|9593_1  [L=238]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.9e-21   73.7   0.0    3.5e-21   73.5   0.0    1.1  1  TIGR03634 arc_protsome_B: proteasome endopeptidase complex, archaeal, beta subunit
    2.9e-10   38.1   0.0    3.9e-10   37.6   0.0    1.1  1  TIGR03690 20S_bact_beta: proteasome, beta subunit
    9.7e-05   19.7   0.0    0.00016   19.0   0.0    1.3  1  TIGR03633 arc_protsome_A: proteasome endopeptidase complex, archaeal, alpha subunit


Domain annotation for each model (and alignments):
>> TIGR03634  arc_protsome_B: proteasome endopeptidase complex, archaeal, beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.5   0.0   2.5e-24   3.5e-21       4     184 ..      28     210 ..      25     211 .. 0.93

  Alignments for each domain:
  == domain 1    score: 73.5 bits;  conditional E-value: 2.5e-24
   TIGR03634   4 tvGikvkdgvvlAadkraslgnlvasknvkKvfkiddkialtiaGsvgdaqslvrllkaeaklyelrrkkkisvkalatll.snllksskflpflvqllvgGvde.egpklyslDplGsiiedkytatGsGspvalgvLedeYeedlsleeakklavkaiksaieRDvasGdgidvvvitkdg 184
                  +G++ kd  ++Aad+ a+   +v s++ +K++k+d +  l++ G  +d  +  +++k++++ly +r++ ++s++a+a+ + ++  ++ +     v +l++G+d+  gp+ly +D l s+ + + ++ G G  ++ ++L++++++dl+  ea +l     k   +R ++s  + ++ +++ +g
  MMETSP1137-20121227|9593_1  28 LIGFVGKDFAIVAADMNAARSIMVYSQDEDKILKLDSHKLLAVGGDAADCIQEPDFFKKNMDLYAMRNGVPLSTHAAANYMrGEKSYNLRRRMSQVDMLLAGYDKdVGPSLYFIDYLASMQKLDKASHGYGGFFVNSLLDTHWKPDLTEAEALTLLESCFKEIQKRFMISMPNFTIKIVDANG 210
                 5899**************************************************************************97636667777778899*********9558**********************************************************99999999888888776 PP

>> TIGR03690  20S_bact_beta: proteasome, beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.6   0.0   2.9e-13   3.9e-10      15     166 ..      35     182 ..      25     194 .. 0.89

  Alignments for each domain:
  == domain 1    score: 37.6 bits;  conditional E-value: 2.9e-13
   TIGR03690  15 gGvllaGdrratqGnliasrdvekvfkadeysavgiaGtaglavelvklfqvelehyekieGvplslegkanrlaamvrsnlaaalqGlavvpllvGydleaekGrifsydvvggkeeeeeyesvGsGsvfakgalkklykedlseedavrv 166
                 +  ++a d  a++  ++ s+d +k+ k d +  +++ G a+ +++   +f+ +++ y   +Gvpls ++ an +      nl   +  +    ll+Gyd++ +   ++  d   +++++ + +s G G  f ++ l   +k+dl+e++a+++
  MMETSP1137-20121227|9593_1  35 DFAIVAADMNAARSIMVYSQDEDKILKLDSHKLLAVGGDAADCIQEPDFFKKNMDLYAMRNGVPLSTHAAANYMRGEKSYNLRRRMSQV--DMLLAGYDKDVGPS-LYFIDYL-ASMQKLDKASHGYGGFFVNSLLDTHWKPDLTEAEALTL 182
                 55799************************************************************************9*****999865..568*****976554.4445655.567789999**************************975 PP

>> TIGR03633  arc_protsome_A: proteasome endopeptidase complex, archaeal, alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.0   1.2e-07   0.00016      33     213 ..      29     209 ..      21     216 .. 0.83

  Alignments for each domain:
  == domain 1    score: 19.0 bits;  conditional E-value: 1.2e-07
   TIGR03633  33 vGiktkegvvlivdkri.tsklleaesiekifkiDdhvgaataGlvaDarvlidrarveaqvnrltYdepievevlakkvadlkqqytqvGGvrPfGvalliaGvddk.earlfetdPsGalleykavaiGagrekvlellekeykedlsldeaielalkalakale.eelkaeevevavveve 213
                 +G   k+  ++++d  + +s ++ +++ +ki k+D+h   a  G +aD  +  d+ +++   + ++ + p++ ++ a  +   k  y      r   v +l+aG d++ ++ l+  d    + +   ++ G g   v++ll+ ++k dl+  ea++l  + ++++++   +++ +  + +v+++
  MMETSP1137-20121227|9593_1  29 IGFVGKDFAIVAADMNAaRSIMVYSQDEDKILKLDSHKLLAVGGDAADCIQEPDFFKKNMDLYAMRNGVPLSTHAAANYMRGEK-SYNL--RRRMSQVDMLLAGYDKDvGPSLYFIDYLASMQKLDKASHGYGGFFVNSLLDTHWKPDLTEAEALTLLESCFKEIQKrFMISMPNFTIKIVDAN 209
                 6777788888999977615667888999**************************999999999999888888887777766554.3433..357788*********9979**********************************************9877777777634556667777777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (238 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        88  (0.0214529); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.24u 0.12s 00:00:00.36 Elapsed: 00:00:00.42
# Mc/sec: 747.94
//
Query:       MMETSP1137-20121227|9595_1  [L=185]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.8e-54  180.0   1.0    4.4e-54  179.8   0.7    1.1  1  TIGR00982 S23_S12_E_A: ribosomal protein S23 (S12)
    8.9e-11   39.6   0.4    1.6e-10   38.8   0.2    1.4  1  TIGR00981 rpsL_bact: ribosomal protein S12


Domain annotation for each model (and alignments):
>> TIGR00982  S23_S12_E_A: ribosomal protein S23 (S12)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  179.8   0.7   2.2e-57   4.4e-54       1     138 [.      48     184 ..      48     185 .] 0.98

  Alignments for each domain:
  == domain 1    score: 179.8 bits;  conditional E-value: 2.2e-57
   TIGR00982   1 glfaarklkekrkkfrwsdrrykrrvlrlkekadplegapqargivlekvgveakqpnsalrkavrvqlikngkvvtafvpgdgainfidehdevivegiggpkgrsmgdipgvrykvvkvnnvslkelvkgkkekpr 138
                 g+ aarkl++ r+  rw ++ryk+  l  + k +p+ g+  ++givlek+g+eakqpnsa+rk+vr qlikngk+++afvp+dg++nfide dev++ g  g+kg+++gdipgvr+kvvkv +v+l +l++ kkekpr
  MMETSP1137-20121227|9595_1  48 GINAARKLRTVRRENRWAQKRYKKAHLGTQFKCNPFGGSSHCKGIVLEKIGIEAKQPNSAIRKCVRAQLIKNGKKIAAFVPRDGCLNFIDENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVALLALYREKKEKPR 184
                 6779***********************************************************************************************8.599********************************97 PP

>> TIGR00981  rpsL_bact: ribosomal protein S12
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.8   0.2   7.6e-14   1.6e-10      21     101 ..      71     168 ..      47     184 .. 0.74

  Alignments for each domain:
  == domain 1    score: 38.8 bits;  conditional E-value: 7.6e-14
   TIGR00981  21 spalek.........sPqkrGvctrvktvtPkkPnsalrkvarvrl.tngvevtayipGeg..hnlqehsvvlvrG.Gr....vkdlPgvryhivrGa 101
                  + l +         s + +G+++    +  k+Pnsa+rk +r +l  ng +++a++p +g    ++e + vl+ G Gr    v d+Pgvr+++v+ +
  MMETSP1137-20121227|9595_1  71 KAHLGTqfkcnpfggSSHCKGIVLEKIGIEAKQPNSAIRKCVRAQLiKNGKKIAAFVPRDGclNFIDENDEVLIAGfGRkghaVGDIPGVRFKVVKVS 168
                 33333234445555577889************************984699********877325689*******66533333499*********9854 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (185 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        91  (0.0221843); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.19u 0.15s 00:00:00.34 Elapsed: 00:00:00.52
# Mc/sec: 469.58
//
Query:       MMETSP1137-20121227|9597_1  [L=259]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (259 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        71  (0.0173086); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.14s 00:00:00.36 Elapsed: 00:00:00.59
# Mc/sec: 579.41
//
Query:       MMETSP1137-20121227|9598_1  [L=44]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (44 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        64  (0.0156021); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.12s 00:00:00.24 Elapsed: 00:00:00.23
# Mc/sec: 252.50
//
Query:       MMETSP1137-20121227|9599_1  [L=31]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (31 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        19  (0.00463189); expected 82.0 (0.02)
Passed bias filter:                       14  (0.00341297); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.15s 00:00:00.24 Elapsed: 00:00:00.25
# Mc/sec: 163.67
//
Query:       MMETSP1137-20121227|9600_1  [L=222]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (222 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        67  (0.0163335); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.15s 00:00:00.34 Elapsed: 00:00:00.38
# Mc/sec: 771.09
//
Query:       MMETSP1137-20121227|9601_1  [L=39]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (39 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        47  (0.0114578); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.13s 00:00:00.24 Elapsed: 00:00:00.28
# Mc/sec: 177.50
//
Query:       MMETSP1137-20121227|9602_1  [L=221]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.5e-49  164.5   2.3    1.8e-49  164.2   1.6    1.1  1  TIGR01971 NuoI: NADH-quinone oxidoreductase, chain I
    1.4e-18   64.9   0.2    1.9e-18   64.5   0.1    1.1  1  TIGR00403 ndhI: NADH-plastoquinone oxidoreductase, I subunit
    8.3e-11   39.2   4.4    1.2e-10   38.6   3.1    1.1  1  TIGR02512 FeFe_hydrog_A: [FeFe] hydrogenase, group A
    4.2e-10   37.1   3.2    7.3e-10   36.3   2.2    1.3  1  TIGR02700 flavo_MJ0208: archaeoflavoprotein, MJ0208 family
    1.3e-09   35.9   5.6    2.2e-09   35.1   3.9    1.4  1  TIGR02179 PorD_KorD: 2-oxoacid:acceptor oxidoreductase, delta subunit, pyruvate/2-ketoisovalerate family
    1.9e-07   28.7  11.5    1.5e-05   22.5   0.7    2.2  2  TIGR01944 rnfB: electron transport complex, RnfABCDGE type, B subunit
    1.8e-06   24.7  11.8    5.7e-06   23.1   8.2    1.6  1  TIGR04105 FeFe_hydrog_B1: [FeFe] hydrogenase, group B1/B3
    7.9e-06   22.8   7.3      0.006   13.3   0.7    2.1  2  TIGR03224 benzo_boxA: benzoyl-CoA oxygenase/reductase, BoxA protein
      1e-05   22.7   0.3    1.2e-05   22.5   0.2    1.1  1  TIGR04003 rSAM_BssD: [benzylsuccinate synthase]-activating enzyme
    1.4e-05   22.3   2.4    2.1e-05   21.8   1.6    1.2  1  TIGR02494 PFLE_PFLC: glycyl-radical enzyme activating protein family
    3.3e-05   20.4   3.8    4.5e-05   20.0   2.7    1.1  1  TIGR01945 rnfC: electron transport complex, RnfABCDGE type, C subunit
      5e-05   21.2  11.4      0.016   13.2   1.9    2.3  2  TIGR02936 fdxN_nitrog: ferredoxin III, nif-specific
    8.1e-05   20.4   8.4     0.0018   16.0   0.1    2.2  2  TIGR02486 RDH: reductive dehalogenase
     0.0002   18.8   4.5    0.00032   18.1   3.1    1.2  1  TIGR02163 napH_: ferredoxin-type protein, NapH/MauN family
    0.00054   17.8   6.2     0.0061   14.4   4.8    1.9  2  TIGR00402 napF: ferredoxin-type protein NapF
    0.00056   15.6   1.6    0.00081   15.1   1.1    1.3  1  TIGR00314 cdhA: CO dehydrogenase/acetyl-CoA synthase complex, epsilon subunit
    0.00065   16.6   7.3     0.0047   13.8   5.5    1.8  2  TIGR02066 dsrB: sulfite reductase, dissimilatory-type beta subunit
    0.00097   17.2   8.0      0.012   13.7   0.5    2.5  2  TIGR03048 PS_I_psaC: photosystem I iron-sulfur protein PsaC
     0.0012   15.8   2.5     0.0017   15.2   1.8    1.2  1  TIGR02912 sulfite_red_C: sulfite reductase, subunit C
     0.0015   15.8   6.4     0.0029   14.9   4.4    1.4  1  TIGR04041 activase_YjjW: glycine radical enzyme activase, YjjW family
     0.0019   14.6   8.5     0.0039   13.5   5.9    1.4  1  TIGR03287 methan_mark_16: putative methanogenesis marker 16 metalloprotein
     0.0027   15.6   9.4      0.087   10.7   0.7    2.2  2  TIGR02951 DMSO_dmsB: dimethylsulfoxide reductase, chain B
     0.0045   14.7   6.4     0.0099   13.6   4.4    1.5  1  TIGR02060 aprB: adenylylsulfate reductase, beta subunit
     0.0053   13.7  11.3      0.011   12.6   0.4    2.2  2  TIGR00276 TIGR00276: putative iron-sulfur cluster-binding protein
       0.01   13.4   7.6      0.019   12.5   5.2    1.4  1  TIGR03294 FrhG: coenzyme F420 hydrogenase, subunit gamma
  ------ inclusion threshold ------
       0.01   13.0   8.5       0.13    9.4   0.8    2.2  2  TIGR03149 cyt_nit_nrfC: cytochrome c nitrite reductase, Fe-S protein
      0.011   11.9   8.8      0.019   11.1   6.1    1.3  1  TIGR03336 IOR_alpha: indolepyruvate ferredoxin oxidoreductase, alpha subunit
       0.02   12.1  10.2      0.074   10.3   0.8    2.1  2  TIGR00384 dhsB: succinate dehydrogenase and fumarate reductase iron-sulfur protein
      0.029   11.7   8.2      0.035   11.5   4.4    2.0  2  TIGR00397 mauM_napG: MauM/NapG family ferredoxin-type protein
        0.2    6.8   3.7       0.26    6.4   2.5    1.0  1  TIGR03315 Se_ygfK: putative selenate reductase, YgfK subunit
       0.31    7.5   8.1       0.95    5.9   5.6    1.7  2  TIGR03379 glycerol3P_GlpC: glycerol-3-phosphate dehydrogenase, anaerobic, C subunit
       0.62    6.9  10.7        0.4    7.5   1.4    2.1  2  TIGR01582 FDH-beta: formate dehydrogenase, beta subunit
        1.5    5.5   9.6         11    2.6   6.7    1.9  1  TIGR02745 ccoG_rdxA_fixG: cytochrome c oxidase accessory protein CcoG
        1.9    5.4   9.7        1.5    5.7   1.2    2.1  2  TIGR02910 sulfite_red_A: sulfite reductase, subunit A
        2.5    3.6   8.9         19    0.7   6.2    1.9  1  TIGR02176 pyruv_ox_red: pyruvate:ferredoxin (flavodoxin) oxidoreductase


Domain annotation for each model (and alignments):
>> TIGR01971  NuoI: NADH-quinone oxidoreductase, chain I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  164.2   1.6   1.6e-51   1.8e-49       1     121 []      78     199 ..      78     199 .. 0.99

  Alignments for each domain:
  == domain 1    score: 164.2 bits;  conditional E-value: 1.6e-51
   TIGR01971   1 glvltlkylfskkvtlqYPeeklalspryrgrivlkrdp.GeekCiaCelCakvCpaeaikvvkaeeekgkrrlkkyeinlgrCifCglCeevCPtdaivltkefelaseerkdlvyekeel 121
                 g++lt + + ++kvtl+YP ek++lspr+rg+++l+r+p Gee+CiaC+lC+++Cpa+ai+++++ +e+g rr+++y+i++++Ci+Cg+C+e+CP+daiv++++fe+a+e++++l y+k++l
  MMETSP1137-20121227|9602_1  78 GMMLTTSMFWKEKVTLNYPLEKAPLSPRFRGEHALRRYPtGEERCIACKLCEAICPAQAITIEAEVREDGARRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPNFEYATETHEELLYDKQKL 199
                 799********************************************************************************************************************997 PP

>> TIGR00403  ndhI: NADH-plastoquinone oxidoreductase, I subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.5   0.1   1.6e-20   1.9e-18      24     140 ..      77     197 ..      63     205 .. 0.88

  Alignments for each domain:
  == domain 1    score: 64.5 bits;  conditional E-value: 1.6e-20
   TIGR00403  24 qgllvtldhmnrlpitiqypyeklipserfrgrihf.....efdkciacevcvrvcpinlpvvdwelekaikkkelknysidfgvcifcgncveycptnclsmteeyelstydrhelnydqi 140
                 +g+++t +   +  +t++yp ek   s rfrg   +       ++ciac++c  +cp +   ++ e++ +  ++   +y id+  ci+cg c e cp + +    ++e +t    el yd+ 
  MMETSP1137-20121227|9602_1  77 RGMMLTTSMFWKEKVTLNYPLEKAPLSPRFRGEHALrryptGEERCIACKLCEAICPAQAITIEAEVREDGARR-TTRYDIDMTKCIYCGFCQEACPVDAIVEGPNFEYATETHEELLYDKQ 197
                 688999999999********************6554111114689**********************9998776.578*****************************************985 PP

>> TIGR02512  FeFe_hydrog_A: [FeFe] hydrogenase, group A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.6   3.1     1e-12   1.2e-10       7      78 ..     120     187 ..     117     199 .. 0.80

  Alignments for each domain:
  == domain 1    score: 38.6 bits;  conditional E-value: 1e-12
   TIGR02512   7 skCilCerCvkaCekvqevkalkalneklktevatkleklldeseCisCGqCvlvCpvgaitekdeveevlk 78 
                 ++Ci C+ C ++C  ++++ + ++ + + +     +++  +d+++Ci+CG C  +Cpv+ai e  + e +++
  MMETSP1137-20121227|9602_1 120 ERCIACKLCEAICPAQAITIEAEVREDGAR----RTTRYDIDMTKCIYCGFCQEACPVDAIVEGPNFEYATE 187
                 79*************999965555555554....5677789999******************9877665554 PP

>> TIGR02700  flavo_MJ0208: archaeoflavoprotein, MJ0208 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.3   2.2   6.2e-12   7.3e-10     143     201 ..     115     183 ..     110     192 .. 0.78

  Alignments for each domain:
  == domain 1    score: 36.3 bits;  conditional E-value: 6.2e-12
   TIGR02700 143 yaidrkkcklcekcvdacpreais.....kkdgv...v..eirllkclGcGkckevcpynaikgGkeve 201
                 y    ++c  c+ c   cp +ai+     ++dg    +  +i+++kc+ cG c+e+cp +ai +G ++e
  MMETSP1137-20121227|9602_1 115 YPTGEERCIACKLCEAICPAQAITieaevREDGArrtTryDIDMTKCIYCGFCQEACPVDAIVEGPNFE 183
                 556689****************9622222234322222347************************8776 PP

>> TIGR02179  PorD_KorD: 2-oxoacid:acceptor oxidoreductase, delta subunit, pyruvate/2-ketoisovalerate family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.1   3.9   1.9e-11   2.2e-09      24      73 ..     119     177 ..     108     181 .. 0.89

  Alignments for each domain:
  == domain 1    score: 35.1 bits;  conditional E-value: 1.9e-11
   TIGR02179  24 kekCikCklCvlyCpeaaikekeek.........kveidYdyCkGCgiCaeeCpvkaie 73 
                 +e+Ci+CklC + Cp +ai+ + e           ++id   C  Cg C e Cpv+ai 
  MMETSP1137-20121227|9602_1 119 EERCIACKLCEAICPAQAITIEAEVredgarrttRYDIDMTKCIYCGFCQEACPVDAIV 177
                 79***************9988776577899998889999999***************95 PP

>> TIGR01944  rnfB: electron transport complex, RnfABCDGE type, B subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.2   1.9   0.00018     0.021     143     165 ..     120     142 ..     117     155 .. 0.70
   2 !   22.5   0.7   1.3e-07   1.5e-05     110     136 ..     156     182 ..     140     186 .. 0.82

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 0.00018
   TIGR01944 143 dlCtgCdlCvepCPvdcielrpv 165
                 + C++C+lC + CP ++i+++ +
  MMETSP1137-20121227|9602_1 120 ERCIACKLCEAICPAQAITIEAE 142
                 56778888888888887777655 PP

  == domain 2    score: 22.5 bits;  conditional E-value: 1.3e-07
   TIGR01944 110 ideeeCiGCtkCiqaCPvDaivGaaka 136
                 id  +Ci C  C +aCPvDaiv ++++
  MMETSP1137-20121227|9602_1 156 IDMTKCIYCGFCQEACPVDAIVEGPNF 182
                 8999******************99876 PP

>> TIGR04105  FeFe_hydrog_B1: [FeFe] hydrogenase, group B1/B3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.1   8.2   4.8e-08   5.7e-06     142     207 ..     120     178 ..     113     182 .. 0.65

  Alignments for each domain:
  == domain 1    score: 23.1 bits;  conditional E-value: 4.8e-08
   TIGR04105 142 ekCieCGkCkkaCpYnAivelerPCekaCpvkAissdekkkaeidedkCisCGaCvaaCPFgaisd 207
                 e+Ci C  C++ Cp +Ai+          +v+     ++++ +id  kCi CG C +aCP  ai++
  MMETSP1137-20121227|9602_1 120 ERCIACKLCEAICPAQAITIEA-------EVREDGARRTTRYDIDMTKCIYCGFCQEACPVDAIVE 178
                 6777777777777777775432.......3333344556667777777777777777777777765 PP

>> TIGR03224  benzo_boxA: benzoyl-CoA oxygenase/reductase, BoxA protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   0.7   5.2e-05     0.006       9      30 ..     119     140 ..     112     145 .. 0.87
   2 !   13.1   0.4   6.3e-05    0.0073       6      29 ..     155     178 ..     151     190 .. 0.84

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 5.2e-05
   TIGR03224   9 peicircntceetcpidaithd 30 
                  e ci c  ce++cp +ait +
  MMETSP1137-20121227|9602_1 119 EERCIACKLCEAICPAQAITIE 140
                 588****************975 PP

  == domain 2    score: 13.1 bits;  conditional E-value: 6.3e-05
   TIGR03224   6 lidpeicircntceetcpidaith 29 
                  id   ci c  c+e cp+dai  
  MMETSP1137-20121227|9602_1 155 DIDMTKCIYCGFCQEACPVDAIVE 178
                 589999****************86 PP

>> TIGR04003  rSAM_BssD: [benzylsuccinate synthase]-activating enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.5   0.2     1e-07   1.2e-05      48     101 ..     118     176 ..      73     204 .. 0.75

  Alignments for each domain:
  == domain 1    score: 22.5 bits;  conditional E-value: 1e-07
   TIGR04003  48 yedrcvgcgrcvavcsagtsrl...vdnsdgr..tivevdrtdcqrclrcvaacltear 101
                  e+rc+ c  c a+c+a++ ++   v++ + r  t  ++d t+c  c  c  ac  +a 
  MMETSP1137-20121227|9602_1 118 GEERCIACKLCEAICPAQAITIeaeVREDGARrtTRYDIDMTKCIYCGFCQEACPVDAI 176
                 479**************998764445554443114578****************99985 PP

>> TIGR02494  PFLE_PFLC: glycyl-radical enzyme activating protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.8   1.6   1.8e-07   2.1e-05      47     102 ..     119     181 ..     113     203 .. 0.73

  Alignments for each domain:
  == domain 1    score: 21.8 bits;  conditional E-value: 1.8e-07
   TIGR02494  47 eekClecgkCvevceae.......elveaaeskkaisierekceecgkcveaCpseAleivgk 102
                 ee+C+ c+ C+++c+a+          + a+++++ +i+ +kc  cg c+eaCp +A+    +
  MMETSP1137-20121227|9602_1 119 EERCIACKLCEAICPAQaitieaeVREDGARRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPN 181
                 789*************987664321222334556778899****************9865555 PP

>> TIGR01945  rnfC: electron transport complex, RnfABCDGE type, C subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   2.7   3.8e-07   4.5e-05     361     417 ..     118     174 ..     107     190 .. 0.90

  Alignments for each domain:
  == domain 1    score: 20.0 bits;  conditional E-value: 3.8e-07
   TIGR01945 361 kekaCirCgkCveaCPvsLlPqqlallakaeeydeaeelnlmDCieCGsCayvCPsk 417
                  e+ Ci C  C   CP++ +  + +++       +  + +++ Ci CG C   CP +
  MMETSP1137-20121227|9602_1 118 GEERCIACKLCEAICPAQAITIEAEVREDGARRTTRYDIDMTKCIYCGFCQEACPVD 174
                 5789***************99999999999999999999****************76 PP

>> TIGR02936  fdxN_nitrog: ferredoxin III, nif-specific
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   1.9   0.00013     0.016      69      89 ..     119     139 ..     114     141 .. 0.89
   2 !   12.8   1.1   0.00018     0.021       6      37 ..     146     175 ..     141     190 .. 0.79

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 0.00013
   TIGR02936  69 eenCiGCeaCarvCpkkcyth 89 
                 ee+Ci C+ C+ +Cp ++ t 
  MMETSP1137-20121227|9602_1 119 EERCIACKLCEAICPAQAITI 139
                 799**************9986 PP

  == domain 2    score: 12.8 bits;  conditional E-value: 0.00018
   TIGR02936   6 dgkewvpkyvesideekCigCgrCfkvCgrdv 37 
                 dg++ + +y  +id  kCi Cg C  +C+ d 
  MMETSP1137-20121227|9602_1 146 DGARRTTRY--DIDMTKCIYCGFCQEACPVDA 175
                 555555555..799999999999999998775 PP

>> TIGR02486  RDH: reductive dehalogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.3   2.3    0.0067      0.78     207     228 ..     122     143 ..     119     159 .. 0.83
   2 !   16.0   0.1   1.5e-05    0.0018     207     255 ..     161     210 ..     154     219 .. 0.77

  Alignments for each domain:
  == domain 1    score: 7.3 bits;  conditional E-value: 0.0067
   TIGR02486 207 CetCgkCAdeCPsqaIskekep 228
                 C  C+ C   CP+qaI+ e+e 
  MMETSP1137-20121227|9602_1 122 CIACKLCEAICPAQAITIEAEV 143
                 999**************99875 PP

  == domain 2    score: 16.0 bits;  conditional E-value: 1.5e-05
   TIGR02486 207 CetCgkCAdeCPsqaIskekeptwdveaaek.kesgennpkkkwqydgkk 255
                 C  Cg C ++CP++aI ++++  +  e +e+  +++++  ++  ++++  
  MMETSP1137-20121227|9602_1 161 CIYCGFCQEACPVDAIVEGPNFEYATETHEElLYDKQKLLENGNKWESAI 210
                 999*****************999988876666677766666666666654 PP

>> TIGR02163  napH_: ferredoxin-type protein, NapH/MauN family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   3.1   2.7e-06   0.00032     199     251 ..     118     176 ..     108     178 .. 0.79

  Alignments for each domain:
  == domain 1    score: 18.1 bits;  conditional E-value: 2.7e-06
   TIGR02163 199 dkekCdkCmdClevCpekqv.lelalkk.....eestlvlsgdCisCgrCidvCeedvl 251
                  +e+C  C  C ++Cp + + +e+ +++     +    +    Ci Cg C ++C+ d++
  MMETSP1137-20121227|9602_1 118 GEERCIACKLCEAICPAQAItIEAEVREdgarrTTRYDIDMTKCIYCGFCQEACPVDAI 176
                 5799************988734555555566656777899999************9986 PP

>> TIGR00402  napF: ferredoxin-type protein NapF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   0.6     0.027       3.1     130     149 .]     119     138 ..     102     138 .. 0.85
   2 !   14.4   4.8   5.2e-05    0.0061      36      91 ..     121     185 ..     119     194 .. 0.59

  Alignments for each domain:
  == domain 1    score: 5.6 bits;  conditional E-value: 0.027
   TIGR00402 130 selcngcgeckiscfvaait 149
                 +e+c  c  c++ c+  ait
  MMETSP1137-20121227|9602_1 119 EERCIACKLCEAICPAQAIT 138
                 78999999999999999997 PP

  == domain 2    score: 14.4 bits;  conditional E-value: 5.2e-05
   TIGR00402  36 rCtrCgeCisaCennil.....qkgdag..ypevefdnaeCslCgkCaeaCpeslls..Prdtra 91 
                 rC  C  C ++C+++ +     +++d+    +  ++d ++C +Cg C eaCp +++   P+++ a
  MMETSP1137-20121227|9602_1 121 RCIACKLCEAICPAQAItieaeVREDGArrTTRYDIDMTKCIYCGFCQEACPVDAIVegPNFEYA 185
                 67778888888877665222222223321144556777888888888888887665323666555 PP

>> TIGR00314  cdhA: CO dehydrogenase/acetyl-CoA synthase complex, epsilon subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   1.1   6.9e-06   0.00081     399     453 ..     120     175 ..     105     210 .. 0.74

  Alignments for each domain:
  == domain 1    score: 15.1 bits;  conditional E-value: 6.9e-06
   TIGR00314 399 kkctecgnctlacp.nslrvkealakakkGdlskleeleelclacgrceqvcpkni 453
                 ++c  c  c+  cp +++ ++  +++      +++   + +c+ cg c+++cp + 
  MMETSP1137-20121227|9602_1 120 ERCIACKLCEAICPaQAITIEAEVREDGARRTTRYDIDMTKCIYCGFCQEACPVDA 175
                 68***********9557888877776666666667777999***********9764 PP

>> TIGR02066  dsrB: sulfite reductase, dissimilatory-type beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.1   0.7    0.0089         1     212     232 ..     118     138 ..      99     149 .. 0.80
   2 !   13.8   5.5   4.1e-05    0.0047     188     232 ..     127     177 ..     119     186 .. 0.73

  Alignments for each domain:
  == domain 1    score: 6.1 bits;  conditional E-value: 0.0089
   TIGR02066 212 deekcilcGncytncpaldla 232
                  ee+ci c  c   cpa  ++
  MMETSP1137-20121227|9602_1 118 GEERCIACKLCEAICPAQAIT 138
                 689*************98765 PP

  == domain 2    score: 13.8 bits;  conditional E-value: 4.1e-05
   TIGR02066 188 lvvaacPtaalkpke......ekekkslevdeekcilcGncytncpaldla 232
                 l  a cP+ a++ ++       +++++ ++d  kci+cG c++ cp   + 
  MMETSP1137-20121227|9602_1 127 LCEAICPAQAITIEAevredgARRTTRYDIDMTKCIYCGFCQEACPVDAIV 177
                 55689******997434443334456789****************976655 PP

>> TIGR03048  PS_I_psaC: photosystem I iron-sulfur protein PsaC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   0.5   9.8e-05     0.012      45      75 ..     120     150 ..     110     154 .. 0.85
   2 ?    6.9   0.9     0.014       1.6       9      25 ..     160     176 ..     154     181 .. 0.83

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 9.8e-05
   TIGR03048  45 edcvGckrcesacptdflsvrvylgaettrs 75 
                 e c+ ck ce+ cp++ +++   ++++ +r 
  MMETSP1137-20121227|9602_1 120 ERCIACKLCEAICPAQAITIEAEVREDGARR 150
                 78***************99998888877765 PP

  == domain 2    score: 6.9 bits;  conditional E-value: 0.014
   TIGR03048   9 tciGctqcvracptdvl 25 
                  ci c  c  acp+d++
  MMETSP1137-20121227|9602_1 160 KCIYCGFCQEACPVDAI 176
                 69999999999999975 PP

>> TIGR02912  sulfite_red_C: sulfite reductase, subunit C
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   1.8   1.5e-05    0.0017     168     219 ..     119     177 ..     111     189 .. 0.74

  Alignments for each domain:
  == domain 1    score: 15.2 bits;  conditional E-value: 1.5e-05
   TIGR02912 168 adrcvgcgacvkvckkkavgalslenykvvr.......eeekcigcgecvlkcptgawt 219
                 ++rc++c+ c   c  +a+   + +     r       +  kci cg c ++cp  a  
  MMETSP1137-20121227|9602_1 119 EERCIACKLCEAICPAQAITIEAEVREDGARrttrydiDMTKCIYCGFCQEACPVDAIV 177
                 68**************99987654443333311113335689************99865 PP

>> TIGR04041  activase_YjjW: glycine radical enzyme activase, YjjW family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   4.4   2.4e-05    0.0029      37      86 ..     116     175 ..     113     198 .. 0.83

  Alignments for each domain:
  == domain 1    score: 14.9 bits;  conditional E-value: 2.4e-05
   TIGR04041  37 PetinkCksCgeCveeCpagalsled..........gkvvwdkekCveCdeCikvCkkks 86 
                 P+  ++C +C+ C + Cpa+a+++e            +   d +kC+ C  C ++C+ ++
  MMETSP1137-20121227|9602_1 116 PTGEERCIACKLCEAICPAQAITIEAevredgarrtTRYDIDMTKCIYCGFCQEACPVDA 175
                 777899*****************9887888887754455567899***********9877 PP

>> TIGR03287  methan_mark_16: putative methanogenesis marker 16 metalloprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   5.9   3.3e-05    0.0039     297     347 ..     115     176 ..     108     181 .. 0.77

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 3.3e-05
   TIGR03287 297 vkynperClnCkvClveekCPveaikk.............dkeldtedCfgCGvCaeiCpsgvv 347
                   + +erC+ Ck C+    CP +ai                 ++d ++C  CG+C+e Cp +++
  MMETSP1137-20121227|9602_1 115 YPTGEERCIACKLCE--AICPAQAITIeaevredgarrttRYDIDMTKCIYCGFCQEACPVDAI 176
                 456789********6..58****9965455666665555445678899************8875 PP

>> TIGR02951  DMSO_dmsB: dimethylsulfoxide reductase, chain B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.7   0.7   0.00074     0.087      94     117 ..     119     142 ..     114     148 .. 0.87
   2 !    9.3   1.2     0.002      0.24      92     111 ..     156     175 ..     147     190 .. 0.85

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 0.00074
   TIGR02951  94 qdkciGckycalacpygapqyeee 117
                 +++ci ck c+  cp +a  +e+e
  MMETSP1137-20121227|9602_1 119 EERCIACKLCEAICPAQAITIEAE 142
                 789*************99888766 PP

  == domain 2    score: 9.3 bits;  conditional E-value: 0.002
   TIGR02951  92 vdqdkciGckycalacpyga 111
                 +d  kci c  c+ acp +a
  MMETSP1137-20121227|9602_1 156 IDMTKCIYCGFCQEACPVDA 175
                 68899***********9998 PP

>> TIGR02060  aprB: adenylylsulfate reductase, beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   4.4   8.5e-05    0.0099       8      72 ..     120     186 ..     116     198 .. 0.80

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 8.5e-05
   TIGR02060   8 ekcdgckalektacvyicpndlmtldkekrk.......aynrepdmcwecyscvkicpqgaidvrgyadfap 72 
                 e+c  ck      c+ icp++ +t+++e r         y+++   c  c  c  +cp +ai   +  ++a 
  MMETSP1137-20121227|9602_1 120 ERCIACK-----LCEAICPAQAITIEAEVREdgarrttRYDIDMTKCIYCGFCQEACPVDAIVEGPNFEYAT 186
                 7899999.....9************988653221122259999999****************9888888875 PP

>> TIGR00276  TIGR00276: putative iron-sulfur cluster-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   2.9     0.014       1.7     158     178 ..     119     139 ..     112     158 .. 0.82
   2 !   12.6   0.4   9.8e-05     0.011     160     194 ..     160     195 ..     155     206 .. 0.73

  Alignments for each domain:
  == domain 1    score: 5.5 bits;  conditional E-value: 0.014
   TIGR00276 158 eerCgkCtkCldaCptqAlve 178
                 eerC  C+ C  +Cp qA+  
  MMETSP1137-20121227|9602_1 119 EERCIACKLCEAICPAQAITI 139
                 89****************964 PP

  == domain 2    score: 12.6 bits;  conditional E-value: 9.8e-05
   TIGR00276 160 rCgkCtkCldaCptqAlve.pevvdarrcisvltie 194
                 +C  C+ C +aCp +A+ve p +  a +  + l+ +
  MMETSP1137-20121227|9602_1 160 KCIYCGFCQEACPVDAIVEgPNFEYATETHEELLYD 195
                 7999**************934444444555555555 PP

>> TIGR03294  FrhG: coenzyme F420 hydrogenase, subunit gamma
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.5   5.2   0.00016     0.019     175     217 ..     121     173 ..     116     183 .. 0.79

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 0.00016
   TIGR03294 175 lcmGcGtcaaacptraielv.....dG.....rpevnkdlcikcGacyvqcpr 217
                  c+ c  c a cp++ai+++     dG     r +++  +ci cG c  +cp 
  MMETSP1137-20121227|9602_1 121 RCIACKLCEAICPAQAITIEaevreDGarrttRYDIDMTKCIYCGFCQEACPV 173
                 5****************9963333344433336689999*************6 PP

>> TIGR03149  cyt_nit_nrfC: cytochrome c nitrite reductase, Fe-S protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   0.7    0.0039      0.46     124     145 ..     119     140 ..     115     149 .. 0.84
   2 ?    9.4   0.8    0.0011      0.13     117     140 ..     151     174 ..     144     188 .. 0.84

  Alignments for each domain:
  == domain 1    score: 7.6 bits;  conditional E-value: 0.0039
   TIGR03149 124 kekcvgcqyclaacpyrvrfin 145
                 +e+c+ c+ c a+cp +   i+
  MMETSP1137-20121227|9602_1 119 EERCIACKLCEAICPAQAITIE 140
                 689************9977665 PP

  == domain 2    score: 9.4 bits;  conditional E-value: 0.0011
   TIGR03149 117 tgivdvdkekcvgcqyclaacpyr 140
                 t   d+d  kc+ c++c  acp  
  MMETSP1137-20121227|9602_1 151 TTRYDIDMTKCIYCGFCQEACPVD 174
                 556799999************975 PP

>> TIGR03336  IOR_alpha: indolepyruvate ferredoxin oxidoreductase, alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   6.1   0.00016     0.019     541     595 .]     111     176 ..     102     176 .. 0.75

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 0.00016
   TIGR03336 541 kavklkvdeekCikCkkCikelgCPaie............eedkevvidkl.CsgCgvCvqvCpvdai 595
                   +++   ee+Ci Ck C     CPa              ++  +  id + C+ Cg C + Cpvdai
  MMETSP1137-20121227|9602_1 111 ALRRYPTGEERCIACKLCEA--ICPAQAitieaevredgaRRTTRYDIDMTkCIYCGFCQEACPVDAI 176
                 556788899*********76..899743335566543333334456899999***************8 PP

>> TIGR00384  dhsB: succinate dehydrogenase and fumarate reductase iron-sulfur protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   1.3    0.0044      0.52     140     157 ..     120     137 ..      73     157 .. 0.86
   2 ?   10.3   0.8   0.00063     0.074     138     158 ..     157     177 ..     140     197 .. 0.81

  Alignments for each domain:
  == domain 1    score: 7.5 bits;  conditional E-value: 0.0044
   TIGR00384 140 seCieCglCyssCpakkl 157
                 ++Ci C lC + Cpa++ 
  MMETSP1137-20121227|9602_1 120 ERCIACKLCEAICPAQAI 137
                 68************9865 PP

  == domain 2    score: 10.3 bits;  conditional E-value: 0.00063
   TIGR00384 138 elseCieCglCyssCpakkln 158
                 ++++Ci Cg C  +Cp+ + +
  MMETSP1137-20121227|9602_1 157 DMTKCIYCGFCQEACPVDAIV 177
                 799************987655 PP

>> TIGR00397  mauM_napG: MauM/NapG family ferredoxin-type protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0       7.2   8.5e+02      54      75 ..      16      37 ..      10      63 .. 0.58
   2 ?   11.5   4.4   0.00029     0.035     138     189 ..     122     173 ..     113     178 .. 0.87

  Alignments for each domain:
  == domain 1    score: -2.8 bits;  conditional E-value: 7.2
   TIGR00397 54 acvrcglcveacpldilklasw 75
                a+vr g+  +a    + + a w
  MMETSP1137-20121227|9602_1 16 AVVRRGVLRQAATRSLCSKAPW 37
                4555555555555555555543 PP

  == domain 2    score: 11.5 bits;  conditional E-value: 0.00029
   TIGR00397 138 glncsicvrvcpirgeaislkpiknergllqipvvdsakctgcgtcekhcvl 189
                  ++c +c  +cp +  +i  +  +   ++     +d +kc  cg c+  c +
  MMETSP1137-20121227|9602_1 122 CIACKLCEAICPAQAITIEAEVREDGARRTTRYDIDMTKCIYCGFCQEACPV 173
                 67899*******99988888888888899999999***********999954 PP

>> TIGR03315  Se_ygfK: putative selenate reductase, YgfK subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   2.5    0.0022      0.26     882     937 ..     121     175 ..     110     179 .. 0.72

  Alignments for each domain:
  == domain 1    score: 6.4 bits;  conditional E-value: 0.0022
   TIGR03315 882 rclecsyvcekcvdvcPnra.nisiav.agfrdkfqivhld.amcnecGncatfcPydg 937
                 rc+     c+ c  +cP +a  i  +v  +   ++    +d + c  cG c++ cP d+
  MMETSP1137-20121227|9602_1 121 RCI----ACKLCEAICPAQAiTIEAEVrEDGARRTTRYDIDmTKCIYCGFCQEACPVDA 175
                 554....5789999****98335555543333444455677347************885 PP

>> TIGR03379  glycerol3P_GlpC: glycerol-3-phosphate dehydrogenase, anaerobic, C subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   0.9     0.011       1.3      52      67 ..     120     135 ..      94     149 .. 0.80
   2 ?    5.9   5.6    0.0081      0.95       5      69 ..     120     176 ..     116     201 .. 0.80

  Alignments for each domain:
  == domain 1    score: 5.5 bits;  conditional E-value: 0.011
   TIGR03379  52 kyctnckrcevacpsd 67 
                   c+ ck ce  cp++
  MMETSP1137-20121227|9602_1 120 ERCIACKLCEAICPAQ 135
                 5688888888888875 PP

  == domain 2    score: 5.9 bits;  conditional E-value: 0.0081
   TIGR03379   5 escikctvctvvcpvakanplypgpkqagpdgerlrlksaelydealkyctnckrcevacpsdvk 69 
                 e+ci c  c ++cp            +   dg r     +  yd  +  c+ c  c+ acp d  
  MMETSP1137-20121227|9602_1 120 ERCIACKLCEAICPAQAITI----EAEVREDGARR----TTRYDIDMTKCIYCGFCQEACPVDAI 176
                 79************765544....45677899884....5679*9****************9864 PP

>> TIGR01582  FDH-beta: formate dehydrogenase, beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   1.1     0.037       4.4     124     139 ..     120     135 ..     117     146 .. 0.71
   2 ?    7.5   1.4    0.0034       0.4     120     139 ..     155     174 ..     149     186 .. 0.86

  Alignments for each domain:
  == domain 1    score: 4.2 bits;  conditional E-value: 0.037
   TIGR01582 124 ekcigcgyciagcpfn 139
                 e+ci c++c a cp +
  MMETSP1137-20121227|9602_1 120 ERCIACKLCEAICPAQ 135
                 6788888888777765 PP

  == domain 2    score: 7.5 bits;  conditional E-value: 0.0034
   TIGR01582 120 dfdhekcigcgyciagcpfn 139
                 d+d  kci cg+c   cp +
  MMETSP1137-20121227|9602_1 155 DIDMTKCIYCGFCQEACPVD 174
                 78889999999999999987 PP

>> TIGR02745  ccoG_rdxA_fixG: cytochrome c oxidase accessory protein CcoG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   6.7     0.093        11     229     267 ..     118     171 ..      83     178 .. 0.64

  Alignments for each domain:
  == domain 1    score: 2.6 bits;  conditional E-value: 0.093
   TIGR02745 229 klgdCvdCeaCvqvCPtg.iDI....R.dGlQ.........leCInCaeCiDAC 267
                  +  C+ C++C ++CP+  i I    R dG            +CI C+ C +AC
  MMETSP1137-20121227|9602_1 118 GEERCIACKLCEAICPAQaITIeaevReDGARrttrydidmTKCIYCGFCQEAC 171
                 3567************74344422335445432222222224699999999999 PP

>> TIGR02910  sulfite_red_A: sulfite reductase, subunit A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   1.2     0.013       1.5     219     236 ..     119     136 ..     109     154 .. 0.81
   2 ?    4.6   1.0      0.03       3.6     218     236 ..     157     175 ..     139     191 .. 0.78

  Alignments for each domain:
  == domain 1    score: 5.7 bits;  conditional E-value: 0.013
   TIGR02910 219 dsrciacGrcntvcptct 236
                 ++rciac  c+ +cp+ +
  MMETSP1137-20121227|9602_1 119 EERCIACKLCEAICPAQA 136
                 68*************865 PP

  == domain 2    score: 4.6 bits;  conditional E-value: 0.03
   TIGR02910 218 ydsrciacGrcntvcptct 236
                   ++ci cG c+ +cp  +
  MMETSP1137-20121227|9602_1 157 DMTKCIYCGFCQEACPVDA 175
                 4578999999999999755 PP

>> TIGR02176  pyruv_ox_red: pyruvate:ferredoxin (flavodoxin) oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   6.2      0.16        19     683     754 ..     120     174 ..     116     211 .. 0.68

  Alignments for each domain:
  == domain 1    score: 0.7 bits;  conditional E-value: 0.16
   TIGR02176 683 dkciqcnqcafvcPhaairavlldeeelekapegfksldakgkeleglkyriqvsvedctGcglcvdicPak 754
                 ++ci c+ c  +cP  ai + +   e   +           +     ++y i   ++ c+ cg c ++cP  
  MMETSP1137-20121227|9602_1 120 ERCIACKLCEAICPAQAITIEAEVRE---DG----------A--RRTTRYDI--DMTKCIYCGFCQEACPVD 174
                 78999999999999988876432222...22..........1..12345554..556788888888888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (221 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       110  (0.0268162); expected 82.0 (0.02)
Passed bias filter:                      103  (0.0251097); expected 82.0 (0.02)
Passed Vit filter:                        44  (0.0107265); expected 4.1 (0.001)
Passed Fwd filter:                        36  (0.00877621); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              35  [number of targets reported over threshold]
# CPU time: 0.46u 0.18s 00:00:00.64 Elapsed: 00:00:00.74
# Mc/sec: 394.18
//
Query:       MMETSP1137-20121227|9603_1  [L=83]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.015   12.8   1.0      0.017   12.6   0.7    1.1  1  TIGR00145 TIGR00145: FTR1 family protein


Domain annotation for each model (and alignments):
>> TIGR00145  TIGR00145: FTR1 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.7   4.1e-06     0.017      30      85 ..      10      72 ..       6      79 .. 0.72

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 4.1e-06
   TIGR00145 30 kraqrtklkivvwvGvlagvaislaigig.vigaygslekee......keLlegilgviavvm 85
                + a + + + +vw G+ a++ ++++ig+  v+ a+  ++  +        +l++i+ v  +v+
  MMETSP1137-20121227|9603_1 10 AHADVSEYQWIVWFGAFAAFFAAFGIGANdVANAFATSVGSKaltikqACILAAIFEVAGAVL 72
                5688899999*****************964777777666555455554455666665555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (83 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       124  (0.0302292); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.09u 0.22s 00:00:00.31 Elapsed: 00:00:00.49
# Mc/sec: 223.57
//
Query:       MMETSP1137-20121227|9604_1  [L=492]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.5e-49  165.3   0.1    7.2e-47  158.1   0.3    2.1  2  TIGR01357 aroB: 3-dehydroquinate synthase


Domain annotation for each model (and alignments):
>> TIGR01357  aroB: 3-dehydroquinate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.2   0.0   0.00055       2.3       3      77 ..      45     120 ..      43     125 .. 0.87
   2 !  158.1   0.3   1.8e-50   7.2e-47      72     333 ..     142     410 ..     122     416 .. 0.89

  Alignments for each domain:
  == domain 1    score: 5.2 bits;  conditional E-value: 0.00055
   TIGR01357   3 vkvgegllkklveelae.kasklvvitdeeveklvaekleealkslgvevlvlvvpdgeesKsletvaklldqlle 77 
                 v +g++ l +lv el++   +k+++  de++  ++a +le+ l+++g+  + +v+   e++K+++++ ++l++ l+
  MMETSP1137-20121227|9604_1  45 VLLGHDKLPELVGELKTlDMDKVFLGYDENTVVHCAPRLEAELERQGIPFYRCVMGVSEQNKTMASLDHILETFLK 120
                 666777777888888885449999999****************************************999988765 PP

  == domain 2    score: 158.1 bits;  conditional E-value: 1.8e-50
   TIGR01357  72 ldqlleekler.ksvlvaiGGGvvgDlaGFvAatylRGirlvqvPTtllamvDssvG.GKtginlplgkNliGafyqPkaVlidlkvletlperelreGmaEviKhgliadaelfeelekneklllklaelealeelikrsievKaevVeeDekesglRalLNfGHtlgHaiEallkyklsHGeaVaiGmvveaklseklgllkaellerlvallkklglptklkkklsveellkallkDKK.....negskiklvlleeiGkaalase 333
                  ++l+   ++  k+v++ +GGG+v    G +A    RGirlvq PT++l + D++    K +in+ + kN++G ++ P++ l d++  etl   el++G++E+ K +++ + + +e ++k++ +     + + l e+   ++  K  + + D+ke+ l  l  +GHt+gHa+E + + + sHGe V+iGm  + ++s+k+g+++  ++e + al+ +l ++++++k+  +ee+l+++++D K     ++++   ++l ++iG++   ++
  MMETSP1137-20121227|9604_1 142 RRALVYDSADXmKTVVMPVGGGIVANTYGLAAGLLFRGIRLVQCPTSFLNAHDAAASsQKQAINHTGYKNIVGLYHVPTMALXDTSXYETLGVTELKAGLGELTKNAALFGGQHYELIKKTTMTKGVALSGDDLVEATYIGLGAKDMLLAIDPKEKHLALLFEYGHTVGHALELTQGVRTSHGEGVTIGMLAASYISNKMGIMSDADREAHDALVLALDPQIEIPKRDITEEVLDKVMHDNKrgylpEREGFCPFILNQRIGEMHAPNK 410
                 555555555541567778***********************************9986269**********************************************************998876555578899*********************************************************************************************99999*********99444444788899999999999887665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (492 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       121  (0.0294978); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.21s 00:00:00.55 Elapsed: 00:00:00.42
# Mc/sec: 1546.16
//
Query:       MMETSP1137-20121227|9605_1  [L=453]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (453 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        57  (0.0138957); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.25s 00:00:00.45 Elapsed: 00:00:00.32
# Mc/sec: 1868.47
//
Query:       MMETSP1137-20121227|9607_1  [L=360]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (360 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        90  (0.0219405); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.22s 00:00:00.40 Elapsed: 00:00:00.37
# Mc/sec: 1284.22
//
Query:       MMETSP1137-20121227|9608_1  [L=363]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      3e-26   89.4   0.0    3.8e-26   89.1   0.0    1.1  1  TIGR03903 TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
      1e-06   26.2   0.0    1.3e-06   25.8   0.0    1.1  1  TIGR03724 arch_bud32: Kae1-associated kinase Bud32


Domain annotation for each model (and alignments):
>> TIGR03903  TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.1   0.0   1.9e-29   3.8e-26       2     233 ..      38     257 ..      37     303 .. 0.89

  Alignments for each domain:
  == domain 1    score: 89.1 bits;  conditional E-value: 1.9e-29
   TIGR03903   2 tghkvaikll.RedaaeeerlvaRFrReialCarLshPnivaLlDsGeaedgllFavFeyveGrtlrevLaadGaLpaaetgrLmlqvLDalaaahdaGvvhRDLkPqnimvsaadveshakvLDFGigaLlpgvedadeatltrttevlGsPaYaaPeqLRgepvtaksDlYaWGLivleCLtGkrvvqGasvaevlykqLsPvdvslPsaiaghpLgevLRkalnkdvrqR 233
                 t++ va+k + R     +++l      ei++ + L+h n+v+L D   +e   ++ v e+ +G  l   + + Ga +       +lq  ++l    ++ ++hRDLkPqn+++s    + + k+ DFG +  + + +d       +++ + GsP Y aPe LR     ak+Dl++ G i+ e Lt ++  +Ga   ++l k++      lP+ +   p   +L + l++++ +R
  MMETSP1137-20121227|9608_1  38 TKRIVAVKAIvRGR--LNQKLTENLEAEISILQTLQHTNVVRLHDVQTTER-HVYLVMEFCPGGDLSRXIRSRGAQSEPMARGFLLQLAEGLRYLRSHNLIHRDLKPQNLLLSSLSADATLKIADFGFARYMQQ-QD-------LAETLCGSPLYMAPEILRFQKYDAKADLWSVGAIMYELLTARPPFTGANHVQLL-KNIESSSAQLPPQLT-QPCQRLLSSLLQREPTER 257
                 56667887541444..6788999999*******************998888.9************************999999********************************************9865433.23.......455689*******************************************99976.778889999***995.799999999999999988 PP

>> TIGR03724  arch_bud32: Kae1-associated kinase Bud32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.8   0.0   6.4e-10   1.3e-06       3     141 ..      23     168 ..      21     203 .. 0.85

  Alignments for each domain:
  == domain 1    score: 25.8 bits;  conditional E-value: 6.4e-10
   TIGR03724   3 kkGAEaeiylgeflglkavvKeRvkKsYrhpelDeklrkeRtrkEarllseakkagvntPvvydvdpeekkivmeyiegkklkdlleekel.......ellkevGelvgklHkagivhgDlttsNiivk....ddklyliDfGLgkkske 141
                  +G+ a++y+g+  g+k +v +   K+    +l++kl  e   +E+ +l++++++ v   + ++ ++++  +vme   g +l+  ++++          +l +++e +  l +++++h Dl ++N++++    d +l + DfG +++ ++
  MMETSP1137-20121227|9608_1  23 GQGSFATVYRGQHRGTKRIVAV---KAIVRGRLNQKLT-ENLEAEISILQTLQHTNVVRLHDVQTTERHVYLVMEFCPGGDLSRXIRSRGAqsepmarGFLLQLAEGLRYLRSHNLIHRDLKPQNLLLSslsaDATLKIADFGFARYMQQ 168
                 6888999999999998888754...5666677888885.55789*********998877777777778899***************9988788899989999*************************9767668889999*****99765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (363 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        98  (0.0238908); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.30u 0.17s 00:00:00.47 Elapsed: 00:00:00.64
# Mc/sec: 748.63
//
Query:       MMETSP1137-20121227|9609_1  [L=105]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (105 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        45  (0.0109703); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.11s 00:00:00.25 Elapsed: 00:00:00.26
# Mc/sec: 533.03
//
Query:       MMETSP1137-20121227|9610_1  [L=545]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   4.1e-184  610.0   6.1   1.2e-170  565.6   1.3    2.0  2  TIGR01060 eno: phosphopyruvate hydratase
    4.1e-07   27.2   0.0    8.9e-07   26.1   0.0    1.5  1  TIGR01928 menC_lowGC/arch: o-succinylbenzoate synthase
    0.00054   16.9   0.0     0.0012   15.7   0.0    1.5  2  TIGR02534 mucon_cyclo: muconate and chloromuconate cycloisomerases
     0.0023   14.8   0.1     0.0054   13.6   0.1    1.6  1  TIGR01502 B_methylAsp_ase: methylaspartate ammonia-lyase


Domain annotation for each model (and alignments):
>> TIGR01060  eno: phosphopyruvate hydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.7   0.1   3.6e-16   3.6e-13      32      85 ..       1      54 [.       1      86 [. 0.82
   2 !  565.6   1.3  1.2e-173  1.2e-170       1     421 [.     103     540 ..     103     543 .. 0.94

  Alignments for each domain:
  == domain 1    score: 46.7 bits;  conditional E-value: 3.6e-16
   TIGR01060 32 aivPsGastGekealelrdkdkkrylgkGvlkavenvneviapeliGldaldqa 85
                a+vPsGastG  ealelrd++k  y+gkGv kav+n+n  +a++   ++ + q+
  MMETSP1137-20121227|9610_1  1 AAVPSGASTGVYEALELRDGNKADYMGKGVSKAVSNINVGLAHSEAHTSIMAQT 54
                79************************************9888765555554443 PP

  == domain 2    score: 565.6 bits;  conditional E-value: 1.2e-173
   TIGR01060   1 ikdvearevldsrGnPtveveviledgtvgraivPsGastGekealelrdkdkkrylgkGvlkavenvneviapeliGldaldqaeidqili.eldgten.....ksklGanailavslavakaaakalelplyrylggvn.....alvlPvPllniinGGahadnkldlqefmivPvgaeslkealrlgaevfhalkkllkekg..latavGdeGGfaPnlksneealeilveaiekagykpgedvalaldvaasefydeekkkyvlkgeek......sltsee.lieyleelvekypivsiedglseedwegfaeltkelGdkvqlvGddlfvtnaellkkGiekgvanailiklnqiGtltetleavklakkagytavishrsGetedttiadlavalnagqiktGslsrseriakynqLlrieeelgeeakyagkka 421
                 i+ ++ar+++dsrGnPtvev+vi+++g++ ra+vPsGastG  ealelrd+ k  y+gkGv kaven+n++i p+l+G+d ++q+eid +++ eldg++n     ksklGa ailavs+av+ka a+++++ply+++++        + +PvP  niinGG+ha nkl +qefmi Pvga+s+kea+++g+ev+h+lkk++++k    a +vGdeGGfaPn+ +n+e l+++veaie agy  +  v++ +dvaasef++ee+k+y l+ +++       +t ee l+++++++v++yp+vsied+++++d++++ ++t e+G+k+q+vGddl vtn+ ++kk ie++++na+l+k+nqiG++te++eav++ak ag+ ++ shrsGetedt+iadlav+l++gqiktG+  rser+akynqLlrieee g++a y+g++ 
  MMETSP1137-20121227|9610_1 103 ITGMKARQIFDSRGNPTVEVDVITTKGEY-RAAVPSGASTGIYEALELRDGIKADYMGKGVSKAVENINTIIGPALVGMDPTQQKEIDDKMVqELDGSKNdwgwsKSKLGAXAILAVSMAVCKAGASSKSMPLYKHIAELAgnptdKFYMPVPSFNIINGGSHAGNKLAMQEFMILPVGASSFKEAMKMGSEVYHNLKKVIAKKYgqDACNVGDEGGFAPNILENKEGLDLVVEAIEMAGY--TGKVKIGMDVAASEFWKEEEKVYDLDFKTEnndksqYKTGEElLTHVYKDFVDNYPMVSIEDPFDQDDFDSYGKMTAEMGEKCQIVGDDLLVTNPTRVKKAIESKACNALLLKVNQIGSVTESIEAVNMAKAAGWGVMTSHRSGETEDTFIADLAVGLKTGQIKTGAPCRSERLAKYNQLLRIEEECGASAVYTGADF 540
                 56789**********************66.999******************************************************9877538****98777778*******************************998877887899*****************************************************99766899*******************************..567999*****************988776656777644444426789***************************************************************************************************************************************************9765 PP

>> TIGR01928  menC_lowGC/arch: o-succinylbenzoate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.1   0.0   8.7e-10   8.9e-07     164     279 ..     357     480 ..     301     483 .. 0.74

  Alignments for each domain:
  == domain 1    score: 26.1 bits;  conditional E-value: 8.7e-10
   TIGR01928 164 lvkklrkrfpdiplvvDAnesyelkDlprl.....ke.LdrydllyiEePfkadDlselkelkkel..ltpiclDE.sitslddlrklielgavkviniKpgRlGGltealkviellkehgakvw 279
                 + k+ +k +  + +  + n+  + k   +l     k+ +d+y ++ iE+Pf+ dD  ++ +++ e+  +  i  D+  +t+   ++k+ie +a++ + +K+  +G +te+  +++++k  g +v+
  MMETSP1137-20121227|9610_1 357 FWKEEEKVYD-LDFKTENNDKSQYKTGEELlthvyKDfVDNYPMVSIEDPFDQDDFDSYGKMTAEMgeKCQIVGDDlLVTNPTRVKKAIESKACNALLLKVNQIGSVTESIEAVNMAKAAGWGVM 480
                 5555555554.666666665444433222211112443699********************99988334455555527999*************************************9988775 PP

>> TIGR02534  mucon_cyclo: muconate and chloromuconate cycloisomerases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.0      0.99     1e+03      65      85 ..     168     188 ..     158     200 .. 0.76
   2 !   15.7   0.0   1.2e-06    0.0012     217     291 ..     401     478 ..     383     503 .. 0.88

  Alignments for each domain:
  == domain 1    score: -3.7 bits;  conditional E-value: 0.99
   TIGR02534  65 lidtylaPvlvgrkateiaai 85 
                 +i+t + P+lvg++ t+  +i
  MMETSP1137-20121227|9610_1 168 NINTIIGPALVGMDPTQQKEI 188
                 799999999999998876655 PP

  == domain 2    score: 15.7 bits;  conditional E-value: 1.2e-06
   TIGR02534 217 lieqPtaaedlealarltarl..evpimadea.vtgPedalelakksaadvialkiaksGGlleakevaaiakaagia 291
                  ie P  ++d ++  ++ta +  +  i+ d+  vt P    + ++ +a + + lk+++ G ++e+ e +++akaag  
  MMETSP1137-20121227|9610_1 401 SIEDPFDQDDFDSYGKMTAEMgeKCQIVGDDLlVTNPTRVKKAIESKACNALLLKVNQIGSVTESIEAVNMAKAAGWG 478
                 599**************99874478999998626779999999********************************965 PP

>> TIGR01502  B_methylAsp_ase: methylaspartate ammonia-lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   0.1   5.2e-06    0.0054     267     372 ..     401     500 ..     385     509 .. 0.78

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 5.2e-06
   TIGR01502 267 riegPmdvgsrqaqieamaelraelddrGvaaeivadewcntv.edvklfvdakaadlvqiktPdvGgvaesaravlyckandvgayvGGtcnetdlsaeasvhval 372
                  ie P d +      +++ ++ ae    G + +iv d+   t    vk  +++ka++ + +k   +G+v+es +av + ka++ g        et+ +  a   v+l
  MMETSP1137-20121227|9610_1 401 SIEDPFDQD----DFDSYGKMTAE---MGEKCQIVGDDLLVTNpTRVKKAIESKACNALLLKVNQIGSVTESIEAVNMAKAAGWGVMTSHRSGETEDTFIADLAVGL 500
                 677777744....46777777665...588899***9987665278************************************9999988888888766555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (545 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       161  (0.0392491); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.41u 0.17s 00:00:00.57 Elapsed: 00:00:00.51
# Mc/sec: 1410.47
//
Query:       MMETSP1137-20121227|9611_1  [L=258]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (258 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        96  (0.0234032); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.13s 00:00:00.37 Elapsed: 00:00:00.52
# Mc/sec: 654.87
//
Query:       MMETSP1137-20121227|9612_1  [L=315]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (315 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       191  (0.0465627); expected 82.0 (0.02)
Passed bias filter:                      104  (0.0253535); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.11s 00:00:00.38 Elapsed: 00:00:00.51
# Mc/sec: 815.23
//
Query:       MMETSP1137-20121227|9613_1  [L=486]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (486 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       127  (0.0309605); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.12s 00:00:00.46 Elapsed: 00:00:00.52
# Mc/sec: 1233.59
//
Query:       MMETSP1137-20121227|9614_1  [L=428]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.018   11.6   0.0      0.028   10.9   0.0    1.3  1  TIGR01326 OAH_OAS_sulfhy: O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase


Domain annotation for each model (and alignments):
>> TIGR01326  OAH_OAS_sulfhy: O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   6.9e-06     0.028     129     194 ..     160     224 ..     136     242 .. 0.83

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 6.9e-06
   TIGR01326 129 kddleelekaidentkavfletignPkldvlDiekvaevakkagvplivD.ntvatpylvrPlehGa 194
                  d++  l+++id+   av+le  g P+  v ++e++ e akk+gvp+ +  n   tpy+ + le  +
  MMETSP1137-20121227|9614_1 160 ADNPRLLKEVIDKGVSAVYLEKPGAPT--VSELEEMREYAKKKGVPVYMGyNKNVTPYVRKALEVAM 224
                 5778889******************96..789**************977438888999988887655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (428 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       173  (0.0421745); expected 82.0 (0.02)
Passed bias filter:                      153  (0.0372989); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.18s 00:00:00.52 Elapsed: 00:00:00.44
# Mc/sec: 1283.89
//
Query:       MMETSP1137-20121227|9615_1  [L=108]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-05   23.0   2.2    6.8e-05   20.7   0.7    2.1  2  TIGR02603 CxxCH_TIGR02603: putative heme-binding domain
    0.00042   17.5   0.9    0.00068   16.8   0.5    1.5  2  TIGR00782 ccoP: cytochrome c oxidase, cbb3-type, subunit III
    0.00066   17.2   2.0     0.0034   14.9   1.4    1.9  1  TIGR03045 PS_II_C550: cytochrome c-550
  ------ inclusion threshold ------
      0.077   11.0   1.4       0.31    9.0   0.4    2.1  2  TIGR03872 cytochrome_MoxG: cytochrome c(L), periplasmic


Domain annotation for each model (and alignments):
>> TIGR02603  CxxCH_TIGR02603: putative heme-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.7   0.7   6.7e-08   6.8e-05       1      39 [.       7      46 ..       7      82 .. 0.91
   2 ?    2.0   0.0      0.04        41     120     133 ..      93     106 ..      80     107 .. 0.83

  Alignments for each domain:
  == domain 1    score: 20.7 bits;  conditional E-value: 6.7e-08
   TIGR02603  1 gdaekGkavfakaCvvCHrvggeG.vdvGPdLtgvkatke 39
                g++e G + f+ +C++CH+ ++ G ++ GP+L gv  +k+
  MMETSP1137-20121227|9615_1  7 GNVEAGAKLFKAKCATCHTCNEGGpNKQGPNLYGVLGRKS 46
                7899****************99995679****99976665 PP

  == domain 2    score: 2.0 bits;  conditional E-value: 0.04
   TIGR02603 120 sdedladLvayLks 133
                 +++d ad+vayL++
  MMETSP1137-20121227|9615_1  93 KEQDRADIVAYLNT 106
                 47899*******87 PP

>> TIGR00782  ccoP: cytochrome c oxidase, cbb3-type, subunit III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.5   6.6e-07   0.00068     200     239 ..       6      44 ..       3      82 .. 0.75
   2 ?   -2.0   0.0      0.36   3.7e+02     253     275 ..      82     104 ..      72     107 .. 0.70

  Alignments for each domain:
  == domain 1    score: 16.8 bits;  conditional E-value: 6.6e-07
   TIGR00782 200 ealaakGkelFadnCvsChgedgkGlqelgapnltddvwl 239
                 +  +++G++lF++ C++Ch+ +  G +++g pnl   +  
  MMETSP1137-20121227|9615_1   6 DGNVEAGAKLFKAKCATCHTCNEGGPNKQG-PNLYGVLGR 44 
                 567899*************99999999998.998765555 PP

  == domain 2    score: -2.0 bits;  conditional E-value: 0.36
   TIGR00782 253 kGrigvmPawkkrlseaqikala 275
                 kG     P +kk+ + a+i a +
  MMETSP1137-20121227|9615_1  82 KGTNMAFPGFKKEQDRADIVAYL 104
                 56666677777777777777654 PP

>> TIGR03045  PS_II_C550: cytochrome c-550
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   1.4   3.3e-06    0.0034      50      76 ..       8      37 ..       5      88 .. 0.75

  Alignments for each domain:
  == domain 1    score: 14.9 bits;  conditional E-value: 3.3e-06
   TIGR03045 50 qvkkgkrlfnsaCatChv...gGitktnpn 76
                +v++g +lf+++CatCh+   gG  k  pn
  MMETSP1137-20121227|9615_1  8 NVEAGAKLFKAKCATCHTcneGGPNKQGPN 37
                7899*************7333566666666 PP

>> TIGR03872  cytochrome_MoxG: cytochrome c(L), periplasmic
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   0.4    0.0003      0.31      42      71 ..       7      38 ..       3      42 .. 0.79
   2 ?    0.1   0.0      0.17   1.7e+02       5      32 ..      79     106 ..      75     108 .] 0.87

  Alignments for each domain:
  == domain 1    score: 9.0 bits;  conditional E-value: 0.0003
   TIGR03872 42 ealkkgeslfltacsGchGheaeg..klGPgl 71
                  ++ g +lf + c+ ch  +  g  k GP l
  MMETSP1137-20121227|9615_1  7 GNVEAGAKLFKAKCATCHTCNEGGpnKQGPNL 38
                67899*************87655444788876 PP

  == domain 2    score: 0.1 bits;  conditional E-value: 0.17
   TIGR03872   5 ntvtGealdlseakegrdteavkkflet 32 
                 + ++G+++ + + k+++d + + ++l+t
  MMETSP1137-20121227|9615_1  79 KYIKGTNMAFPGFKKEQDRADIVAYLNT 106
                 5799999999999999999999999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (108 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       107  (0.0260848); expected 82.0 (0.02)
Passed bias filter:                       98  (0.0238908); expected 82.0 (0.02)
Passed Vit filter:                        18  (0.0043881); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.19u 0.16s 00:00:00.35 Elapsed: 00:00:00.36
# Mc/sec: 395.97
//
Query:       MMETSP1137-20121227|9617_1  [L=160]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (160 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        74  (0.01804); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.13s 00:00:00.30 Elapsed: 00:00:00.27
# Mc/sec: 782.16
//
Query:       MMETSP1137-20121227|9618_1  [L=217]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (217 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        66  (0.0160897); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.16s 00:00:00.38 Elapsed: 00:00:00.98
# Mc/sec: 292.26
//
Query:       MMETSP1137-20121227|9619_1  [L=183]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0018   16.1   0.6     0.0022   15.8   0.4    1.1  1  TIGR01632 L11_bact: ribosomal protein L11


Domain annotation for each model (and alignments):
>> TIGR01632  L11_bact: ribosomal protein L11
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.4   5.3e-07    0.0022       6     139 ..      29     161 ..      25     162 .. 0.80

  Alignments for each domain:
  == domain 1    score: 15.8 bits;  conditional E-value: 5.3e-07
   TIGR01632   6 iiklqveagkAkPsppvGpalgqkgvnimeFckefNartkdlekgvvvpvvitvyeDksftfivktppvsvllkkaagvekg..skkpkkekvgkitlkqvreiAklKlsDlnaleleaavkiiaGtAksmGieve 139
                 ++ + v++g+      + p +g  g++  +   +  ++t+d  kg+ v + + v + +  +++v  p+++ l+ ka++      +k  + ++ g+it +++ ++A++       ++  + +  + GtA+s+G ++ 
  MMETSP1137-20121227|9619_1  29 VVYVRVTGGEVGAVSSLAPKVGPLGLSPKKVGDDIAKATQD-WKGLRVTAKLNVQN-RQAKVEVV-PSAAALIIKALKEPPRdrKKVKNIQHSGSITFDDIIKVARIMAPRSLSKTFTGTILEMLGTAQSVGXKID 161
                 66777888888888888999999999999999999999*99.89999999999865.55677764.777777778877644300334455699***************99988888999999999*******9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (183 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       120  (0.029254); expected 82.0 (0.02)
Passed bias filter:                      105  (0.0255973); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.20u 0.16s 00:00:00.36 Elapsed: 00:00:00.26
# Mc/sec: 929.00
//
Query:       MMETSP1137-20121227|9620_1  [L=336]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.6e-53  179.0   0.0    3.2e-53  178.7   0.0    1.0  1  TIGR03569 NeuB_NnaB: N-acetylneuraminate synthase
    4.6e-38  129.0   0.0    6.6e-38  128.5   0.0    1.1  1  TIGR03586 PseI: pseudaminic acid synthase


Domain annotation for each model (and alignments):
>> TIGR03569  NeuB_NnaB: N-acetylneuraminate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  178.7   0.0   1.6e-56   3.2e-53       3     273 ..      46     320 ..      44     327 .. 0.90

  Alignments for each domain:
  == domain 1    score: 178.7 bits;  conditional E-value: 1.6e-56
   TIGR03569   3 iiaEaGvnHnGdlelAkklvdaAaeaGadavKfQtfkaeelvskeakkaeYqkkttgaeesqlemlkkleLseedhkeLkeyceekgieflStpfdeesvdlLeelgvkalKipSgeitnlPllkkia.klkkpvilStGmatleeieealkvlaeaglkeeevtlLhctteYPapveevnLkametlkeafk...lkvGySDHtegievpiaavalGatviEkHfTldknleGpDhkaSlepeelkelvkairevekalgdgvkkptkselknr 273
                 ++aE+G+nH G++++Ak+l+  A+++Ga   KfQ    +el+++e  +      t     +  +  + le+s e+h+eL ey +e gie+  +++d +s++ + ++    lK+pS+  +   +lk +  ++  +v +StGm+t +eie+ +k+++e+ ++++++++  ct+ YP p++++ +  ++ l ++++    ++ +S H +gi+v iaa alGat iE+HfT d++ +G Dh+aSlep+ l +++++++++ +al  +  +  + e+++r
  MMETSP1137-20121227|9620_1  46 VVAEIGCNHMGKMDIAKELMRLAKDCGAAYAKFQKRCPKELLTEEQYNKPHPVPTNAYGATYGAHREFLEFSVEQHRELWEYGKEIGIEWATSTWDVTSAREMXTIPCDFLKVPSACNNHFEMLKVLRdEYAGDVHVSTGMTTKDEIEAVVKFFEEKDAAKSRLVIYNCTSGYPVPFKDICMLELRRLYDEYGdrvKEIAFSGHHLGIAVDIAAYALGATWIERHFTKDRTWKGTDHAASLEPAGLGKMCRDLHATWEALSYKGTEVLEIETEQR 320
                 9************************************99999998877766665555555555666679**********************************************9666667777654156889**********************************************************9776789********************************************************99999877777766666655 PP

>> TIGR03586  PseI: pseudaminic acid synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  128.5   0.0   3.2e-41   6.6e-38       3     272 ..      45     320 ..      43     328 .. 0.87

  Alignments for each domain:
  == domain 1    score: 128.5 bits;  conditional E-value: 3.2e-41
   TIGR03586   3 fiiaelsanhngsleralelieaakkaGadavklqtyta.dtltldsdkeefvikgslWdgrk.LyeLYqeaktPweWhkelfekakelgllvfssPfdekavdlLesldapaykiasfeitdleliekvakt.gkPiilstGiatleeieeaveivkeagc..edlvlLkCvsaYPapledanlktiadlkerf...nvkvGlsDhtlgllasvaavalGasviekhfiLdrsdggvDsafslepeelkalvkevreaelalGevkyelsekekksk 272
                  ++ae+  nh g+++ a+el++ ak++Ga   k+q   + + lt +  ++   +  + + +++  +   +  +   e h+el+e+ ke+g+    s +d ++   + ++ +   k+ s   ++ e+++    +    + +stG++t++eie++v+ ++e+++  + lv+ +C+s YP p++d+ + ++ +l +++     ++ +s h lg+++ +aa alGa+ ie+hf+ dr+ +g+D+a slep+ l +++++ +++++al  +  e+ e e++++
  MMETSP1137-20121227|9620_1  45 KVVAEIGCNHMGKMDIAKELMRLAKDCGAAYAKFQKRCPkELLTEEQYNKPHPVPTNAYGATYgAHR--EFLEFSVEQHRELWEYGKEIGIEWATSTWDVTSAREMXTIPCDFLKVPSACNNHFEMLKVLRDEyAGDVHVSTGMTTKDEIEAVVKFFEEKDAakSRLVIYNCTSGYPVPFKDICMLELRRLYDEYgdrVKEIAFSGHHLGIAVDIAAYALGATWIERHFTKDRTWKGTDHAASLEPAGLGKMCRDLHATWEALSYKGTEVLEIETEQR 320
                 69*********************************98872567877778888887777765431333..4456789****************************************************99766156799*****************9877652267*****************************54224689************************************************************988888877765554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (336 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       143  (0.034861); expected 82.0 (0.02)
Passed bias filter:                      131  (0.0319356); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.28u 0.16s 00:00:00.44 Elapsed: 00:00:00.54
# Mc/sec: 821.27
//
Query:       MMETSP1137-20121227|9621_1  [L=170]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (170 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        43  (0.0104827); expected 82.0 (0.02)
Passed bias filter:                       35  (0.00853242); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.14s 00:00:00.33 Elapsed: 00:00:00.37
# Mc/sec: 606.44
//
Query:       MMETSP1137-20121227|9622_1  [L=245]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.9e-46  156.6   0.7      2e-46  156.5   0.0    1.4  2  TIGR03674 fen_arch: flap structure-specific endonuclease
    1.8e-14   50.9   0.1    2.7e-11   40.4   0.0    2.0  2  TIGR00600 rad2: DNA excision repair protein (rad2)
      4e-08   29.9   0.1    5.3e-08   29.5   0.0    1.2  1  TIGR00593 pola: DNA polymerase I


Domain annotation for each model (and alignments):
>> TIGR03674  fen_arch: flap structure-specific endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  156.5   0.0   1.4e-49     2e-46     138     338 .]       2     203 ..       1     203 [. 0.90
   2 ?   -4.8   1.0       1.7   2.3e+03      85     105 ..     214     234 ..     210     243 .. 0.50

  Alignments for each domain:
  == domain 1    score: 156.5 bits;  conditional E-value: 1.4e-49
   TIGR03674 138 LlellgipyvqApsegEAqaaymvkkgdvdavgsqDYDsLlfGaprlvrnltisgkrklpkknvyvevkpElieLeevLkelgitreqLidiailvGTDynegv.kgiGpkkalklikelgdlekvlke....keeeie..nldeirelFlnPpvtdd..Yelelkkpdkekiieflveehdfseervekalerleka.kkskqktLdawf 338
                 Ll l+g+p+v+Ap+e+EA +a + k g v a+g++D D+L f +p lvr+l   ++rk p  +          +L++vL+ ++++ +q id+ il+G Dy + + kgiGp++alkl++e+g +e vl++     +  ++   ++e r lF+ P+v +    el++++pd e+++++lv+e++f +erv+ka+erl+k  +k++q +L+++f
  MMETSP1137-20121227|9622_1   2 LLVLMGVPVVDAPCEAEATCAALSKAGLVYATGTEDMDALTFATPVLVRHLNEAESRKKPIFE---------FNLQRVLEGMQLSMDQFIDVCILCGCDYVDSIxKGIGPTTALKLVREHGAMEGVLEHlkakGTVLPDpfPYEEARTLFKSPEVIETsgLELKWTEPDVEGLTSYLVDEKQFAAERVKKAIERLQKCkEKKSQGRLESFF 203
                 899****************************************************98876444.........79***************************77648*********************99654312223345799***********764228999*********************************978999******98 PP

  == domain 2    score: -4.8 bits;  conditional E-value: 1.7
   TIGR03674  85 elKkeeleeRrevreeaeekl 105
                  lK+++ e+ ++ +++a + l
  MMETSP1137-20121227|9622_1 214 ALKRKQAEQDAKNKKNAPKGL 234
                 455555555555555554444 PP

>> TIGR00600  rad2: DNA excision repair protein (rad2)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.4   0.0     2e-14   2.7e-11     785     899 ..       2     118 ..       1     124 [. 0.86
   2 !    9.1   0.1   5.6e-05     0.076     931    1021 ..     127     216 ..     118     234 .. 0.69

  Alignments for each domain:
  == domain 1    score: 40.4 bits;  conditional E-value: 2e-14
   TIGR00600 785 LLrlFGiPYivAPmEAEAqCakLdlldlvdGiiTDDSDvfLFGarkvYkNfF...nknkfVEyYqyedikkqlgldrkklinLAyLLGSDYTeGl.ptvGpVsalEilnEFpGdglepL 899
                 LL l G+P + AP EAEA Ca L +  lv  + T+D D   F +  + + +    +++k +  ++ + +++ + l   ++i++  L G DY + + +++Gp +al ++ E +  ++e++
  MMETSP1137-20121227|9622_1   2 LLVLMGVPVVDAPCEAEATCAALSKAGLVYATGTEDMDALTFATPVLVRHLNeaeSRKKPIFEFNLQRVLEGMQLSMDQFIDVCILCGCDYVDSIxKGIGPTTALKLVREHG--AMEGV 118
                 899***************************************98777776642224566666678899999999********************9568************98..45554 PP

  == domain 2    score: 9.1 bits;  conditional E-value: 5.6e-05
   TIGR00600  931 lqLtdeFPnplVaeAYlkPvV.DdskssFlWGkPDldklReFlkaqlGWsrektdEvLlPvlkkkkakqtqlridsFFrlaqqekeaakvik 1021
                    L+d FP       +  P+V + s    +W  PD++ l ++l  +  +  e+     +  l+k k k+ q r++sFF    +     k +k
  MMETSP1137-20121227|9622_1  127 TVLPDPFPYEEARTLFKSPEViETSGLELKWTEPDVEGLTSYLVDEKQFAAERVKKA-IERLQKCKEKKSQGRLESFFGAT-TVISSEKALK 216 
                  44788888888888888898724566689*************976666666665554.567899999***********833.3322223333 PP

>> TIGR00593  pola: DNA polymerase I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.5   0.0   3.9e-11   5.3e-08     130     331 ..      35     234 ..      19     245 .] 0.59

  Alignments for each domain:
  == domain 1    score: 29.5 bits;  conditional E-value: 3.9e-11
   TIGR00593 130 sgDkDllQlvsdnvkvlkl....kgktelteltaeavvekygvtpeqlvdlkaLvG.DkSDnipGvkgiGeKtAakLLkefgslekiyenlekikseklkekLkeekedallskelatietdvplevdledlrlkeedreklve.lleelef..kslkkkleklesseaedka..........eeeeeekelvakeeeekaeleevaekaekdalvlekl 331
                 ++D D+l    + v v +l    + k+ + e++ + v e + +  +q++d+  L+G D  D i   kgiG+ tA+kL++e+g++e+++e+l+++    l +    e++  l+   + ++ +   le     l+++e+d e l++ l++e +f  + +kk +e l++ ++++++          +          +++e++ + ++++++a++++ + + l
  MMETSP1137-20121227|9622_1  35 TEDMDALTFATP-VLVRHLneaeSRKKPIFEFNLQRVLEGMQLSMDQFIDVCILCGcDYVDSIX--KGIGPTTALKLVREHGAMEGVLEHLKAKGT-VLPDPFPYEEARTLFK--SPEVIETSGLE-----LKWTEPDVEGLTSyLVDEKQFaaERVKKAIERLQKCKEKKSQgrlesffgatT---------VISSEKALKRKQAEQDAKNKKNAPKGL 234
                 556666555444.3344433355566778899************************88889985..9************************98766.6666666555444443..22222222333.....44556666666665555555511334555555544444444333333322221.........233444444444444443333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (245 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       213  (0.0519259); expected 82.0 (0.02)
Passed bias filter:                      135  (0.0329108); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.29u 0.14s 00:00:00.43 Elapsed: 00:00:00.54
# Mc/sec: 598.84
//
Query:       MMETSP1137-20121227|9623_1  [L=213]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.8e-05   22.1   0.0    4.5e-05   21.4   0.0    1.3  1  TIGR00229 sensory_box: PAS domain S-box protein
  ------ inclusion threshold ------
      0.039   10.3   0.0      0.049    9.9   0.0    1.1  1  TIGR02938 nifL_nitrog: nitrogen fixation negative regulator NifL


Domain annotation for each model (and alignments):
>> TIGR00229  sensory_box: PAS domain S-box protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   0.0   2.2e-08   4.5e-05      25     105 ..      58     139 ..      52     148 .. 0.83

  Alignments for each domain:
  == domain 1    score: 21.4 bits;  conditional E-value: 2.2e-08
   TIGR00229  25 GnilyvNrafeeifGYsaeeliGrnvlelipeedreevrerierrle.gerepvseerrvkrkdGseiwvevsvspird.agg 105
                   i+  N  ++++ G+++ee+iG+++  l  e+   +v++++  r + +  e      + + k+G+++  +++ ++++  +++
  MMETSP1137-20121227|9623_1  58 DVIVGCNSTWCDLCGFKPEEAIGKSPKLLQGEDTDAKVARVFTDRVSdESGESDCALIN-YAKSGRRFLHHLHAKRLDGlDKK 139
                 578999************************************99999555555555555.5**********999999855544 PP

>> TIGR02938  nifL_nitrog: nitrogen fixation negative regulator NifL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.0   2.4e-05     0.049      26      93 ..      60     128 ..      37     134 .. 0.89

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 2.4e-05
   TIGR02938  26 ilyanaafseitGyakeeviGknesvlsnrttPpevyqalwgslaekkPwa.Gkllnrrkdgelylael 93 
                 i+  n+++ ++ G+ +ee iGk   +l  + t  +v + + ++++++   +   l+n  k g+++l +l
  MMETSP1137-20121227|9623_1  60 IVGCNSTWCDLCGFKPEEAIGKSPKLLQGEDTDAKVARVFTDRVSDESGESdCALINYAKSGRRFLHHL 128
                 566799999***********************************9987655278***********9887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (213 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        83  (0.020234); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.21u 0.13s 00:00:00.34 Elapsed: 00:00:00.34
# Mc/sec: 826.87
//
Query:       MMETSP1137-20121227|9624_1  [L=255]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.7e-57  190.2   2.0    6.4e-57  189.8   1.4    1.1  1  TIGR03953 rplD_bact: 50S ribosomal protein L4
    2.9e-07   28.0   1.9    0.00089   16.6   0.3    2.3  2  TIGR03672 rpl4p_arch: 50S ribosomal protein L4P


Domain annotation for each model (and alignments):
>> TIGR03953  rplD_bact: 50S ribosomal protein L4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  189.8   1.4   3.1e-60   6.4e-57      13     187 ..      67     245 ..      57     246 .. 0.93

  Alignments for each domain:
  == domain 1    score: 189.8 bits;  conditional E-value: 3.1e-60
   TIGR03953  13 neqllhevvkaqlanrrqgtaktktrseVsgggkKpyrQKgtGrARqGsirsplfrgGGvvfGpkprdysqklnkKvrrlAlrsaLseklkegklvvvddlkleepkTkellkilkklgl....ekkvLivvdekdenlelsarNlpkvkvleveglnvydllkadkvvlteeavkkle 187
                    ++++ v++++an+r gta+tktrs+V+ggg+Kpy+QKgtGrAR+Gs rspl +gGGv+ Gpkp++y+ k+nkK++rlA+++aL + + + +lv   d ++++p+Tk ++++l++l++    ++++L++++ ++en++l+arN+p +++++ +++n++dl+ka+kv + ++a++ ++
  MMETSP1137-20121227|9624_1  67 GAYIIQRKVVTEQANMRLGTACTKTRSDVRGGGRKPYKQKGTGRARRGSSRSPLLKGGGVTXGPKPKSYRLKMNKKEKRLAISTALMSAIPKMALVEDLDSHFTAPRTKXMKAFLDRLSVdtenRESTLVITKARHENTYLAARNIPYLNLMTLDNINARDLVKAKKVFIAKSAMDVMK 245
                 56799***********************************************************************************99986665555569****************999887789***********************************************99876 PP

>> TIGR03672  rpl4p_arch: 50S ribosomal protein L4P
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.3   4.3e-07   0.00089      30     128 ..      70     164 ..      42     175 .. 0.72
   2 !   10.8   0.0   2.5e-05     0.052     191     229 ..     190     229 ..     187     247 .. 0.86

  Alignments for each domain:
  == domain 1    score: 16.6 bits;  conditional E-value: 4.3e-07
   TIGR03672  30 likravlaaqtarl.qpkGadplaGkrtsaeslgsgrGvarvprlkessraarvpqavgGrkahpPkvekklvekiNkkEkklairsAi.aatakkelvka 128
                 +i+r v+++q++++     +++ + +r   +   +++G+ r +r  +s    r p  +gG  +  Pk+ k++  k+NkkEk+lai +A+ +a  k+ lv++
  MMETSP1137-20121227|9624_1  70 IIQRKVVTEQANMRlGTACTKTRSDVRGGGRKPYKQKGTGRARR--GS---SRSPLLKGGGVTXGPKP-KSYRLKMNKKEKRLAISTALmSAIPKMALVED 164
                 67777777777654145556667777777777777888888777..33...3558899*********8.678899*************8345556666665 PP

  == domain 2    score: 10.8 bits;  conditional E-value: 2.5e-05
   TIGR03672 191 epksvLivvsd.deellkaarnlpGvdvvtvkelnvelLA 229
                 +++s L++++  +e++  aarn+p ++++t +++n+++L 
  MMETSP1137-20121227|9624_1 190 NRESTLVITKArHENTYLAARNIPYLNLMTLDNINARDLV 229
                 6889*****9989999********************9985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (255 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       127  (0.0309605); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.24u 0.16s 00:00:00.40 Elapsed: 00:00:00.34
# Mc/sec: 989.92
//
Query:       MMETSP1137-20121227|9625_1  [L=97]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0022   16.3   0.6      0.003   15.8   0.4    1.3  1  TIGR01079 rplX_bact: ribosomal protein L24


Domain annotation for each model (and alignments):
>> TIGR01079  rplX_bact: ribosomal protein L24
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.4   7.3e-07     0.003       4      26 ..      47      69 ..      44      96 .. 0.80

  Alignments for each domain:
  == domain 1    score: 15.8 bits;  conditional E-value: 7.3e-07
   TIGR01079  4 ikkgDtVlvisGkdkGkkGkvlk 26
                +k  D +lvi+G dkG++G vl 
  MMETSP1137-20121227|9625_1 47 VKITDPILVIAGPDKGRTGVVLG 69
                8999****************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (97 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       117  (0.0285227); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.15u 0.18s 00:00:00.32 Elapsed: 00:00:00.30
# Mc/sec: 426.76
//
Query:       MMETSP1137-20121227|9626_1  [L=202]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (202 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        60  (0.014627); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.14s 00:00:00.36 Elapsed: 00:00:00.30
# Mc/sec: 888.73
//
Query:       MMETSP1137-20121227|9627_1  [L=459]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   1.4e-200  663.9   3.4   1.6e-200  663.7   2.4    1.0  1  TIGR00485 EF-Tu: translation elongation factor Tu
      4e-58  194.7   4.1    5.8e-57  190.9   2.8    2.3  1  TIGR00483 EF-1_alpha: translation elongation factor EF-1, subunit alpha
    3.1e-52  175.9   0.2    3.8e-52  175.6   0.1    1.1  1  TIGR00475 selB: selenocysteine-specific translation elongation factor
      3e-40  136.5   0.4    5.1e-40  135.7   0.3    1.4  1  TIGR03680 eif2g_arch: translation initiation factor 2, gamma subunit
    5.9e-32  108.5   0.5    7.3e-32  108.2   0.3    1.0  1  TIGR01394 TypA_BipA: GTP-binding protein TypA/BipA
    6.4e-29   99.0   0.0    2.2e-28   97.3   0.0    1.8  1  TIGR02034 CysN: sulfate adenylyltransferase, large subunit
    1.5e-21   74.2   0.3    2.1e-21   73.7   0.2    1.1  1  TIGR01393 lepA: GTP-binding protein LepA
    1.8e-21   73.8   1.6    9.9e-18   61.4   0.0    2.1  2  TIGR00490 aEF-2: translation elongation factor aEF-2
    1.2e-18   65.1   3.0    1.1e-17   61.9   2.1    1.9  1  TIGR00487 IF-2: translation initiation factor IF-2
    1.9e-16   57.2   0.1    3.8e-16   56.2   0.1    1.5  1  TIGR00484 EF-G: translation elongation factor G
    5.5e-14   50.1   0.1    1.4e-13   48.8   0.0    1.6  1  TIGR00231 small_GTP: small GTP-binding protein domain
    3.8e-10   36.6   0.0    5.9e-10   36.0   0.0    1.2  1  TIGR00503 prfC: peptide chain release factor 3
    1.3e-08   31.6   0.1      2e-08   30.9   0.0    1.2  1  TIGR00491 aIF-2: translation initiation factor aIF-2
  ------ inclusion threshold ------
      0.017   11.9   0.1       0.24    8.2   0.0    2.2  2  TIGR03594 GTPase_EngA: ribosome-associated GTPase EngA


Domain annotation for each model (and alignments):
>> TIGR00485  EF-Tu: translation elongation factor Tu
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  663.7   2.4  5.5e-203  1.6e-200       4     392 ..      65     457 ..      62     459 .] 0.98

  Alignments for each domain:
  == domain 1    score: 663.7 bits;  conditional E-value: 5.5e-203
   TIGR00485   4 ekferskphvnvgtighvdhgkttltaaittvlakegk..aaakkydeidkapeekargitintahveyetekrhyahvdcpghadyvknmitgaaqmdgailvvsaadgpmpqtrehillarqvgvpklvvflnkvdlvddeellelvelevrellseydfpgddvpivrgsalkale..gdaeweekilelmeavdeyiptperevdkpfllaiedvfsitgrgtvvtgrvergevkvgeeveivglketkkttvtgvemfkklldeakagdnvgvllrgvkkeeiergqvlakpgsikphkkfeaevyvlkkeeggrhtpffsgyrpqfylrttdvtgkielpegvemvlpgdnvkltvelispvaleeglrfaireggrtvgagvvski 392
                 +++ r+kphvn+gtighvdhgkttltaait+v++++ +  a++k y +idkapeekargitin++hveye+  rhyahvdcpghadyvknmitga+ mdgailvvsa dgpmpqtreh+lla+qvg+ +lvvf+nk+d+ +deelle+ve+e+rell+ +dfp dd+  vrgsal ale  +d+  ++ki+el+++vde iptp re++k fl++ie v+si+grgtv+tgrve g++kvg+eveivgl++t+ktt+tgvemf+kl+d ++agdnvg llrg+k++++ rgqv++kpgsi p +kf+a +y+l+keeggrhtpff++y+pqf++rt+dvtg+++lp + emv+pgdn ++  eli+p+a+ eg+rfaireg +tvgagvv+k+
  MMETSP1137-20121227|9627_1  65 NTYVRTKPHVNIGTIGHVDHGKTTLTAAITKVMSETDGcsANFKGYADIDKAPEEKARGITINSTHVEYESWARHYAHVDCPGHADYVKNMITGASTMDGAILVVSAPDGPMPQTREHVLLAKQVGLKNLVVFMNKCDMQEDEELLEIVEMEIRELLALHDFPADDISFVRGSALCALEgrNDEIGRDKIIELIKQVDEQIPTPVRETEKDFLMPIEGVYSISGRGTVITGRVETGKIKVGDEVEIVGLRKTQKTTITGVEMFHKLMDYGEAGDNVGCLLRGLKRDDVCRGQVVCKPGSILPVTKFSASMYALTKEEGGRHTPFFTNYKPQFFFRTADVTGTVNLPASREMVMPGDNAEIDCELIMPMAVTEGMRFAIREGSKTVGAGVVAKV 457
                 6789******************************98764478899**************************************************************************************************************************************66678899************************************************************************************************************************************************************************************************************98 PP

>> TIGR00483  EF-1_alpha: translation elongation factor EF-1, subunit alpha
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  190.9   2.8     2e-59   5.8e-57       3     422 ..      69     457 ..      67     459 .] 0.85

  Alignments for each domain:
  == domain 1    score: 190.9 bits;  conditional E-value: 2e-59
   TIGR00483   3 kekehlnvafighvdsgkstlvgrllyeagaiderlleklkkeaeekgkasfefayvldklkeerergvtidvahkkfetdkyevtivdapghrdfiknmitgasqadaavlvvavddgelevqpqtrehvllartlgikqlivainkmdsvnydeekfeelkkevsellkkvgykpdevefipvsaykgdnvvkksenapwykgktlleald.kleapekpvdkplripiqdvysitgvgtvpvgrvetgvlkkgekvvfep..agvsgevksiemhheqieqaepgdnigfnvrgvskkdirrgdvagdadnppkvakeftaqivvlqhpgaitvgytpvldahtaqvacrfvellkkldprtgkvkeenpkflktgdaaivklkptkplviekvkeipklgrfairdmgqtvaagvvidv 422
                 + k+h+n+  ighvd+gk+tl+         i      k+  e++    a+f+    +dk  ee+ rg+ti+ +h  +e+   + + vd+pgh d++knmitgas  d a+lvv++ dg    +pqtrehvlla+ +g+k+l+v +nk d+ + dee  e +  e+ ell    + +d++ f+  sa+    +  + +++   k   l++ +d ++ +p + ++k + +pi+ vysi+g gtv  grvetg +k+g++v +        + +  +em h+ ++ +e gdn+g  +rg+ ++d+ rg+v+ ++      + +f+a +  l +       +tp +  +  q   r  ++   ++           +++  gd a +  +   p+ + +        rfair+  +tv+agvv +v
  MMETSP1137-20121227|9627_1  69 RTKPHVNIGTIGHVDHGKTTLTAA-------I-----TKVMSETDG-CSANFKGYADIDKAPEEKARGITINSTHVEYESWARHYAHVDCPGHADYVKNMITGASTMDGAILVVSAPDG---PMPQTREHVLLAKQVGLKNLVVFMNKCDM-QEDEELLEIVEMEIRELLALHDFPADDISFVRGSALC--ALEGRNDEIGRDKIIELIKQVDeQIPTPVRETEKDFLMPIEGVYSISGRGTVITGRVETGKIKVGDEVEIVGlrKTQKTTITGVEMFHKLMDYGEAGDNVGCLLRGLKRDDVCRGQVVCKPGSILP-VTKFSASMYALTKEE--GGRHTPFFTNYKPQFFFRTADVTGTVNL------PASREMVMPGDNAEIDCELIMPMAVTE------GMRFAIREGSKTVGAGVVAKV 457
                 679*****************9753.......3.....444445544.47889888889************************************************************9...99**************************7.5589999999999******************999986..4778889999999999***99945899***************************************9976541145668899************************************99987433.567999999997654..3457777777777765555544443333......344567778888888888888887754......348888888888888888776 PP

>> TIGR00475  selB: selenocysteine-specific translation elongation factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  175.6   0.1   1.3e-54   3.8e-52       1     261 [.      74     362 ..      74     401 .. 0.86

  Alignments for each domain:
  == domain 1    score: 175.6 bits;  conditional E-value: 1.3e-54
   TIGR00475   1 viiataGHvDHGKttLlkaltgid...............adrlPeEkKRGltiDlGyaylpledkvlgliDvPGHekflknalagvggidaalLvvdadeGvkaqtkEHLavlkllgikelivvltKaDrv.deeevkevEeelkeileeeeflk.nakivk...vsAktGq....GieeLkkelknLlesldak..dkqkplrlaiDraFkvKGaGtvvtGtafsGevkvgDelvlepink..kvrvkalqaqnqsvekavAGqRialnladvdkeklkRGllilkpe 261
                 v+i+t GHvDHGKttL  a+t +                 d+ PeEk RG+ti+  +  ++   +    +D PGH  ++kn+++g +++d+a+Lvv a +G+++qt+EH++++k++g+k+l+v ++K D   dee++++vE+e++e+l  + f   +  +v    + A +G+    G +++ + +k++ e++ +   + +k + ++i+ ++++ G Gtv+tG +  G++kvgDe+ + ++ k  k  +  ++ +++  + + AG+ ++  l ++ ++++ RG ++ kp 
  MMETSP1137-20121227|9627_1  74 VNIGTIGHVDHGKTTLTAAITKVMsetdgcsanfkgyadIDKAPEEKARGITINSTHVEYESWARHYAHVDCPGHADYVKNMITGASTMDGAILVVSAPDGPMPQTREHVLLAKQVGLKNLVVFMNKCDMQeDEELLEIVEMEIRELLALHDFPAdDISFVRgsaLCALEGRndeiGRDKIIELIKQVDEQIPTPvrETEKDFLMPIEGVYSISGRGTVITGRVETGKIKVGDEVEIVGLRKtqKTTITGVEMFHKLMDYGEAGDNVGCLLRGLKRDDVCRGQVVCKPG 362
                 689******************998888999999999988899************99999988899****************************************************************8625667899*********9888864145555422234678884444566666777777777766455899**************************************997511667999********************************5555543 PP

>> TIGR03680  eif2g_arch: translation initiation factor 2, gamma subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  135.7   0.3   1.7e-42   5.1e-40       3     332 ..      71     379 ..      69     450 .. 0.75

  Alignments for each domain:
  == domain 1    score: 135.7 bits;  conditional E-value: 1.7e-42
   TIGR03680   3 qpevniglvGhvDhGkttlvkaltGvwtdthseelkrgisikl.GyadaeikkceeceepeaytteekceecgsetellrkvsfvDaPGhetLmatmlsGaalmdgalLviaaneevPqpqtkehlvaleiigiknivivqnkidlvskekalenye.eikefvk..gtvaenapiiPvsal...kkvn.......idvllealekeiptperdldkdalllvarsfdvnkPGteieklkGGviGGslvqGklkvgdeieirPGikvekegkteyepiltevtsleagkkkveeakPgGlvavgtkLDPaltkaDalaGqvvgkpgklppvreklelevkller 332
                 +p+vnig++GhvDhGkttl+ a+t v  +t       g s  + Gyad+   k +e +  + +t +++    +  +++ r+ + vD+PGh   +  m++Ga+ mdga+Lv++a +  P+pqt+eh+   + +g kn+v+  nk d+ + e+ le  e ei+e++   +  a++   +  sal   +  n       i  l+++++++iptp r+++kd+l+ +   + +          +G vi G +  Gk+kvgde+ei  G++ ++         +t++t +e+ +k ++  + g  v+    L   l ++D   Gqvv kpg++ pv++ +  ++  l +
  MMETSP1137-20121227|9627_1  71 KPHVNIGTIGHVDHGKTTLTAAITKVMSETD------GCSANFkGYADID--KAPEEK-ARGITINSTHV--E-YESWARHYAHVDCPGHADYVKNMITGASTMDGAILVVSAPDG-PMPQTREHVLLAKQVGLKNLVVFMNKCDMQEDEELLEIVEmEIRELLAlhDFPADDISFVRGSALcalEGRNdeigrdkIIELIKQVDEQIPTPVRETEKDFLMPIEGVYSISG--------RGTVITGRVETGKIKVGDEVEIV-GLRKTQ---------KTTITGVEMFHKLMDYGEAGDNVGC---LLRGLKRDDVCRGQVVCKPGSILPVTK-FSASMYALTK 379
                 799********************98876553......3333332***976..555544.33555554322..2.4579***********************************986.8************************************88659***975215679**99998887522233332322223566899999******************99999875........5679******************8.666666.........5999999999999999999998775...4457999999*********99988764.4444444444 PP

>> TIGR01394  TypA_BipA: GTP-binding protein TypA/BipA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  108.2   0.3   2.5e-34   7.3e-32       3     257 ..      75     331 ..      73     372 .. 0.80

  Alignments for each domain:
  == domain 1    score: 108.2 bits;  conditional E-value: 2.5e-34
   TIGR01394   3 niaiiahvDhGkttlvDklLkqsgvlrekee.ve.ervmDsndlererGitilakntavkykd..tkinivDtPGhaDfGGevervlsmvdgvlllvDaseGplpqtrfvlkkalelglkpivv.inkiDrpd.ar.peevvdevfdLfvelgaddeqldfpvvyasakeGvasleeedesedleplfdailehvpaPkadkdeplqllvttldydeylGriaigrverGkvkkgqqvallkkdgkiekariskllafegle 257
                 ni  i hvDhGkttl  ++ k     +  ++  +    +D    e+ rGiti +  t v+y+    +   vD PGhaD+  ++    s +dg++l+v a +Gp+pqtr  +  a ++glk +vv +nk D ++ ++  e v  e+ +L++  +   +++ f  v +sa   +   + e  ++++ +l++ + e++p+P  ++++ + + +  + + +  G +++grve+Gk+k g++v+++   + ++k+ i+ + +f++l 
  MMETSP1137-20121227|9627_1  75 NIGTIGHVDHGKTTLTAAITKVMSETDGCSAnFKgYADIDKAPEEKARGITINS--THVEYESwaRHYAHVDCPGHADYVKNMITGASTMDGAILVVSAPDGPMPQTREHVLLAKQVGLKNLVVfMNKCDMQEdEElLEIVEMEIRELLALHDFPADDISF--VRGSALCALEGRNDEIGRDKIIELIKQVDEQIPTPVRETEKDFLMPIEGVYSISGRGTVITGRVETGKIKVGDEVEIVGLRK-TQKTTITGVEMFHKLM 331
                 999************99998877666553330331345788899********88..55666654488999**************************************988889999999766538****7651441455666788888877777776665..77888888888889999999********************************************************998765.5667788777777664 PP

>> TIGR02034  CysN: sulfate adenylyltransferase, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.3   0.0   7.5e-31   2.2e-28      56     318 ..     114     379 ..      75     385 .. 0.81

  Alignments for each domain:
  == domain 1    score: 97.3 bits;  conditional E-value: 7.5e-31
   TIGR02034  56 dGlqaereqgitidvayryfstdkrkfivadtPGheqytrnmatgastadlavllvdarkGvleqtrrhsiiasllGikhvvlavnkidlvdydeevfeeikkdylalae..klgvsdvtviPlsalkGdnvveksesmpWyeGptllevl....etveveesaeeeelrlpvqyvnrpnldfrGyaGtiasGsvkvGdevvv..lpsgresrvarivtfdgelekaeaGeavtlvle..deidisrGdllaaadeapevadqfaaelvwlad 318
                 d    e+ +giti+ ++  ++   r++   d+PGh  y +nm+tgast+d a+l+v a  G + qtr h ++a  +G+k++v+ +nk d+ + dee +e ++ + ++l +  ++   d+ ++      G  ++    + +     +++e++    e++ +  +++e+++ +p++ v          +G + +G++kvGdev +  l + +++ ++ +  f++ ++  eaG+ v   l+  +  d+ rG+++ +  ++++v+ +f+a++ +l++
  MMETSP1137-20121227|9627_1 114 DKAPEEKARGITINSTHVEYESWARHYAHVDCPGHADYVKNMITGASTMDGAILVVSAPDGPMPQTREHVLLAKQVGLKNLVVFMNKCDMQE-DEELLEIVEMEIRELLAlhDFPADDISFVR-----GSALCALEGRNDEIGRDKIIELIkqvdEQIPTPVRETEKDFLMPIEGVYSISGRGTVITGRVETGKIKVGDEVEIvgLRKTQKTTITGVEMFHKLMDYGEAGDNVGCLLRglKRDDVCRGQVVCKPGSILPVT-KFSASMYALTK 379
                 555568999********************************************************************************987.678999999998887431133445555554.....444444444444443444444440001455566688999*********98877777789*************9983457889999********************9888744678**********99977765.68887777765 PP

>> TIGR01393  lepA: GTP-binding protein LepA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.7   0.2   7.3e-24   2.1e-21       5     263 ..      75     349 ..      71     361 .. 0.77

  Alignments for each domain:
  == domain 1    score: 73.7 bits;  conditional E-value: 7.3e-24
   TIGR01393   5 nfsiiahidhGkstlad...rllektkavserelkeqlldsldlererGitikaqavrlkykakdgeeyvlnlidtPGhvdfsyevsrslaaceGalllvdaaqGveaqtlanvylalekdle.iiPvinkidlPsad..vervkkeieeviGldaeea.....ilvsa...ktGig.......ieelleaivkkvpaPkgdkeaplkalifdsvydayrGvvvyvrvveGkikkgdkikllstgkeyeveevgvltpklvkeeelkaGevGyliagikd 263
                 n+  i h+dhGk+tl+    +++++t+  s   +    +d+   e+ rGiti ++ v  +y++    +y    +d PGh+d+  ++    ++ +Ga+l+v a  G   qt  +v la +  l+ ++  +nk d+   +   e v+ ei+e++ l+   a     ++ sa    +G +       i el++++ +++p+P  ++e++    i   +  + rG v+  rv  Gkik+gd+++++   k+ + + +gv ++++  +      +vG+l  g+k 
  MMETSP1137-20121227|9627_1  75 NIGTIGHVDHGKTTLTAaitKVMSETDGCSANFKGYADIDKAPEEKARGITINSTHV--EYESW-ARHY--AHVDCPGHADYVKNMITGASTMDGAILVVSAPDGPMPQTREHVLLAKQVGLKnLVVFMNKCDMQEDEelLEIVEMEIRELLALHDFPAddisfVRGSAlcaLEGRNdeigrdkIIELIKQVDEQIPTPVRETEKDFLMPIEGVYSISGRGTVITGRVETGKIKVGDEVEIVGLRKTQKTTITGVEMFHKLMDYGEAGDNVGCLLRGLKR 349
                 8899***********97122456667777777777788999999********98876..56433.3445..569***********************************************97366779*****987634699*********9865333011114434321144543222222356777788899*****9999998776666655678************************9999999999998888877655555579**9999985 PP

>> TIGR00490  aEF-2: translation elongation factor aEF-2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.4   0.0   3.4e-20   9.9e-18      15     165 ..      69     218 ..      56     226 .. 0.77
   2 !   11.6   0.2   3.9e-05     0.011     304     377 ..     290     365 ..     280     375 .. 0.84

  Alignments for each domain:
  == domain 1    score: 61.4 bits;  conditional E-value: 3.4e-20
   TIGR00490  15 kpefirnigivahidhgkttlsdnllagagmiseelageqlfldfde..qeqergitidaanvsmvheyegneylinlidtpghvdfggdvtramravdgaivvvcavegvmpqtetvlrqalkenvk.pvlfinkvdrlinelkltaeelqer 165
                 + +   nig + h+dhgkttl+  +           a  + + d+d+  +e++rgiti+++ v    eye        +d pgh d+  ++     ++dgai+vv+a +g mpqt   +  a +  +k  v+f+nk d   +e  l+  e++ r
  MMETSP1137-20121227|9627_1  69 RTKPHVNIGTIGHVDHGKTTLTAAITKVMSETDGCSANFKGYADIDKapEEKARGITINSTHV----EYESWARHYAHVDCPGHADYVKNMITGASTMDGAILVVSAPDGPMPQTREHVLLAKQVGLKnLVVFMNKCDMQEDEELLEIVEMEIR 218
                 555567***************987655444444444444556666653389********9887....7999999999**************9999********************66555566655551589******9888877776666554 PP

  == domain 2    score: 11.6 bits;  conditional E-value: 3.9e-05
   TIGR00490 304 gevavgrlysgaikkgsevylvdskakariqqvgvymgpervevdeipagnivavvglk..eavageticstdkki 377
                 g v +gr+ +g+ik g+ev +v+ ++ ++    gv m  + ++  e      + + glk  + + g+ +c+++ ++
  MMETSP1137-20121227|9627_1 290 GTVITGRVETGKIKVGDEVEIVGLRKTQKTTITGVEMFHKLMDYGEAGDNVGCLLRGLKrdDVCRGQVVCKPGSIL 365
                 8999*******************99999999999999999988888766666788899854567899999998765 PP

>> TIGR00487  IF-2: translation initiation factor IF-2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.9   2.1   3.7e-20   1.1e-17      84     294 ..      69     308 ..      48     314 .. 0.70

  Alignments for each domain:
  == domain 1    score: 61.9 bits;  conditional E-value: 3.7e-20
   TIGR00487  84 eerpPv.vtimGhvDhGktsLLdsirkt..................kvaegeaGGitqhiGayqvekedkk.kitflDtPGheaftsmrarGakvtDivvlvvaadDGvkpqtieaiehakaanv.PiivainkiDkpean..pDrvkqelseyglvpeewGGetifvpvsal...kg....kgideLldaiLlqseveelkanknkqakgvvieakld.kgrGpvatvlvqeGtLkvGDiv 294
                 +++p v +  +GhvDhGkt+L   i k+                  k  e+ a Git  i + +ve+e    + + +D PGh+ + +    Ga   D ++lvv+a DG +pqt e +  ak+ +   ++v++nk D +e +   + v+ e+ e+  + +    +  fv  sal   +g     g d++++ i  + e +     + ++   + ie+  +  grG+v t  v++G +kvGD v
  MMETSP1137-20121227|9627_1  69 RTKPHVnIGTIGHVDHGKTTLTAAITKVmsetdgcsanfkgyadidKAPEEKARGIT--INSTHVEYESWArHYAHVDCPGHADYVKNMITGASTMDGAILVVSAPDGPMPQTREHVLLAKQVGLkNLVVFMNKCDMQEDEelLEIVEMEIRELLALHDFPADDISFVRGSALcalEGrndeIGRDKIIELIKQVDEQIPTPVRETEKDFLMPIEGVYSiSGRGTVITGRVETGKIKVGDEV 308
                 33444334458**********999977422122221111111111112233456666..7788888887544899***********************************************996379********877652357888999998777666677889****9973223311113446666666666666666666666667778998766479******************87 PP

>> TIGR00484  EF-G: translation elongation factor G
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.2   0.1   1.3e-18   3.8e-16      10     143 ..      73     207 ..      63     233 .. 0.84

  Alignments for each domain:
  == domain 1    score: 56.2 bits;  conditional E-value: 1.3e-18
   TIGR00484  10 lrniGisahidaGktttterilfytgkihkigevhdGaatmdwmeqekerGititsaattv.ewkdfrinlidtPGhvdftveverslrvldGavavldavaGvepqsetvwrqakkyevPr.ivfvnkmdkiGan 143
                   niG   h+d Gktt+t  i    +++        G a +d    ek rGiti s+  +  +w  +    +d PGh d+  ++      +dGa++v+ a  G  pq+      ak+ ++   +vf+nk+d    +
  MMETSP1137-20121227|9627_1  73 HVNIGTIGHVDHGKTTLTAAITKVMSETDGCSANFKGYADIDKAPEEKARGITINSTHVEYeSWARH-YAHVDCPGHADYVKNMITGASTMDGAILVVSAPDGPMPQTREHVLLAKQVGLKNlVVFMNKCDMQEDE 207
                 56*****************************************************987665146555.5678************************************99999999999876268******76544 PP

>> TIGR00231  small_GTP: small GTP-binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.8   0.0   4.6e-16   1.4e-13       4     130 ..      74     211 ..      71     229 .. 0.86

  Alignments for each domain:
  == domain 1    score: 48.8 bits;  conditional E-value: 4.6e-16
   TIGR00231   4 ikivivGhvdvGKstLlnsllknkisiteskp....gvtrdyvteqieedGkt............ykvnllDTaGqedfdairrlyvreverslevvdivilvldveeglekqtkeiiheakkkgvp.iilvvnKiDlkd..dlkt 130
                 ++i+ +Ghvd+GK+tL+  ++k   s+t   +    g  + + +  ++ +G+t                 +D +G++d+       v++    ++++d++ilv+++ +g+++qt+e    ak+ g + +++++nK+D ++  +l++
  MMETSP1137-20121227|9627_1  74 VNIGTIGHVDHGKTTLTAAITKVM-SETDGCSanfkGYADIDKAPEEKARGITinsthveyeswaRHYAHVDCPGHADY-------VKNMITGASTMDGAILVVSAPDGPMPQTREHVLLAKQVGLKnLVVFMNKCDMQEdeELLE 211
                 79********************99.8887766777777777777779999999*******9999989999*********.......*****************************999999877765378899****999554444 PP

>> TIGR00503  prfC: peptide chain release factor 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.0   0.0     2e-12   5.9e-10      13     161 ..      75     218 ..      64     236 .. 0.81

  Alignments for each domain:
  == domain 1    score: 36.0 bits;  conditional E-value: 2e-12
   TIGR00503  13 tfaiishpdaGkttltekvllyGnaiqeaGavkargsqrsaksdwmemekqrGisittsvlqfdyrdklvnlldtpGhedfsedtyrtltavdsalmvidaakGveertrkllevtr.lrdlpiltflnkldrdirdplelldevenelk 161
                 ++  i h d Gkttlt  +      + e+    a + +  a  d    ek rGi+i ++ ++++   +    +d pGh d+ ++     +++d a++v+ a  G   +tr  + +++ +    ++ f+nk d +     ell+ ve e++
  MMETSP1137-20121227|9627_1  75 NIGTIGHVDHGKTTLTAAITKV---MSETDGCSA-NFKGYADIDKAPEEKARGITINSTHVEYESWARHYAHVDCPGHADYVKNMITGASTMDGAILVVSAPDGPMPQTREHVLLAKqVGLKNLVVFMNKCDMQE--DEELLEIVEMEIR 218
                 566799**********988643...333333333.3456788999999*************************************************************98776665145557899****99654..4577777776654 PP

>> TIGR00491  aIF-2: translation initiation factor aIF-2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.9   0.0     7e-11     2e-08       9     133 ..      78     203 ..      70     219 .. 0.84

  Alignments for each domain:
  == domain 1    score: 30.9 bits;  conditional E-value: 7e-11
   TIGR00491   9 vlGhvdhGkttlldkirktrvakreaGgitqhiGaseiPidvikrlcgdllkklkidlk..iPGllvidtPGheaftslrkrGGaladiailvvdineGfkpqtveavnilrqlkt.Pfvvaankidr 133
                  +GhvdhGkttl   i  t+v++   G  +   G ++i     ++  g  + + +++ +        +d PGh  + +    G +  d ailvv   +G  pqt e v + +q+    +vv  nk d+
  MMETSP1137-20121227|9627_1  78 TIGHVDHGKTTLTAAI--TKVMSETDGCSANFKGYADIDKAPEEKARGITINSTHVEYEswARHYAHVDCPGHADYVKNMITGASTMDGAILVVSAPDGPMPQTREHVLLAKQVGLkNLVVFMNKCDM 203
                 58**********9999..7799999999999999999988877777777777777776611556788********************************************99975268999999996 PP

>> TIGR03594  GTPase_EngA: ribosome-associated GTPase EngA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.0      0.19        56     171     197 ..      69      95 ..      44      99 .. 0.76
   2 ?    8.2   0.0   0.00083      0.24      78     140 ..     160     222 ..     119     234 .. 0.81

  Alignments for each domain:
  == domain 1    score: 0.4 bits;  conditional E-value: 0.19
   TIGR03594 171 eeeepikiaiiGrpNvGKStLvNallg 197
                 +++ +++i+ iG    GK tL+ a+++
  MMETSP1137-20121227|9627_1  69 RTKPHVNIGTIGHVDHGKTTLTAAITK 95 
                 3455699**************998875 PP

  == domain 2    score: 8.2 bits;  conditional E-value: 0.00083
   TIGR03594  78 eeadvilfvvdareglteeDeeiaklLrksk.kpvilvvNKvdnkkeeaeaaefyslGlgevla 140
                 ++ d  ++vv+a +g +++ +e + l ++ + k++++ +NK+d + e++e+ e++++ ++e+la
  MMETSP1137-20121227|9627_1 160 STMDGAILVVSAPDGPMPQTREHVLLAKQVGlKNLVVFMNKCDMQ-EDEELLEIVEMEIRELLA 222
                 455777889999999999999988888888889999999999988.566678888888887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (459 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       163  (0.0397367); expected 82.0 (0.02)
Passed bias filter:                      130  (0.0316919); expected 82.0 (0.02)
Passed Vit filter:                        25  (0.00609459); expected 4.1 (0.001)
Passed Fwd filter:                        14  (0.00341297); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.59u 0.17s 00:00:00.76 Elapsed: 00:00:00.62
# Mc/sec: 977.15
//
Query:       MMETSP1137-20121227|9628_1  [L=33]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (33 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        24  (0.0058508); expected 82.0 (0.02)
Passed bias filter:                       24  (0.0058508); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.16s 00:00:00.27 Elapsed: 00:00:00.27
# Mc/sec: 161.32
//
Query:       MMETSP1137-20121227|9629_1  [L=605]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (605 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       275  (0.0670405); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.49u 0.18s 00:00:00.67 Elapsed: 00:00:00.51
# Mc/sec: 1565.75
//
Query:       MMETSP1137-20121227|9630_1  [L=530]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.3e-54  182.4   0.0    2.9e-54  182.1   0.0    1.0  1  TIGR01804 BADH: betaine aldehyde dehydrogenase
      4e-46  155.4   0.0    5.4e-46  155.0   0.0    1.0  1  TIGR02299 HpaE: 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase
    1.7e-44  150.2   0.0    2.3e-44  149.8   0.0    1.0  1  TIGR01780 SSADH: succinate-semialdehyde dehydrogenase
    3.7e-44  148.9   0.0      5e-44  148.5   0.0    1.1  1  TIGR03216 OH_muco_semi_DH: 2-hydroxymuconic semialdehyde dehydrogenase
    1.6e-41  140.3   0.0    2.1e-41  139.9   0.0    1.0  1  TIGR01722 MMSDH: methylmalonate-semialdehyde dehydrogenase (acylating)
    1.7e-41  140.2   0.0    2.2e-41  139.8   0.0    1.1  1  TIGR03250 PhnAcAld_DH: putative phosphonoacetaldehyde dehydrogenase
    4.9e-41  138.8   0.0    6.2e-41  138.5   0.0    1.0  1  TIGR03374 ABALDH: 1-pyrroline dehydrogenase
    6.5e-40  135.2   0.0    8.1e-40  134.9   0.0    1.1  1  TIGR01237 D1pyr5carbox2: putative delta-1-pyrroline-5-carboxylate dehydrogenase
    5.2e-36  122.3   0.0    7.7e-36  121.7   0.0    1.1  1  TIGR03240 arg_catab_astD: succinylglutamic semialdehyde dehydrogenase
    7.7e-28   95.1   0.0      1e-27   94.7   0.0    1.1  1  TIGR01238 D1pyr5carbox3: delta-1-pyrroline-5-carboxylate dehydrogenase
    5.8e-25   85.7   0.0    8.4e-25   85.2   0.0    1.2  1  TIGR01236 D1pyr5carbox1: 1-pyrroline-5-carboxylate dehydrogenase
    3.6e-20   69.6   0.0    5.7e-20   68.9   0.0    1.3  1  TIGR02278 PaaN-DH: phenylacetic acid degradation protein paaN
     0.0099   12.0   0.2      0.023   10.7   0.1    1.5  2  TIGR02288 PaaN_2: phenylacetic acid degradation protein paaN


Domain annotation for each model (and alignments):
>> TIGR01804  BADH: betaine aldehyde dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  182.1   0.0   9.3e-57   2.9e-54      36     452 ..      70     485 ..      30     497 .. 0.88

  Alignments for each domain:
  == domain 1    score: 182.1 bits;  conditional E-value: 9.3e-57
   TIGR01804  36 dvekaiaaarraqgewaalsalergrilrriaellrkkneelakletldtGkaleetlvadiddiadvleffaGladk....leGeiielgip.sfakvrreplGvvvgigawnyPlliaswksaPalaaGnalvlkPseitPltalkvaelleeaGlPkGvfnvvlGkgaevGeelvehkdvakvsltGgvetGkkimaaaae.elkkvtlelGGksPlivfddadlelavdqallanffsaGqvcsnGtrvlvekkikekflaklvervkkiklGdgfdeetelGPlisaehrdkvlkyiekgkeegaklaiGGkvpeeeeldeGffiePtvfadvtddmtivreeifGPvlsvlefeseeevikrandteyGlaagvftadleraervaerlkaGtvwindynls...paevPfGGykqsGiG 452
                   ++a a+ +++ g wa  s+ +r  ++++ +  l+k++e++ ++   +  k+  ++    +++   ++++  G  d+    l+G+    +i    a+v+r p+Gv+ ++g++nyP   +     Pal +Gn++v+k  ++  l+ +  +e++  + +P Gv+n v G g+++   +++  +v+  ++ Gg ++   +m++  e +  k +l l  k+  iv+ d +l++av + +++++   Gq c++   ++v+++i ++f +k  + v k+k+G ++++  +l Pl   ++   + + ie + + gak++ G ++      ++G+f++P+v+  v+++m++ +ee fGP+  +  f+s +++ +  ++t +G  a+vf++dl+++  + + l   ++ +n   ++   p   Pf G k s  G
  MMETSP1137-20121227|9630_1  70 ALDAATASWNHGRGAWALASPAHRVAKIQELVVELKKHREQIVNVLMWEICKTSADA----AKEFDRTMDYIQGTLDAhrelLGGDNAFKQIGgVLAQVKRRPVGVMLNMGPFNYPFNETYCTLIPALLMGNSVVMKLPNVGCLAHICTMEVYARV-FPAGVVNFVSGAGRTTMPPIMQSGKVDIFAFIGGSKAADALMKTHPEpHRLKACLALDAKNLAIVMPDCNLDSAVAECVTGSLSYNGQRCTALKLMFVHESIAAQFTEKYCAAVDKMKMGLPWESGVKLTPLPEPSKPGYLRELIEDAEAKGAKVINGLGKQ-----ENGAFVRPSVLYPVSKEMRVWHEEQFGPLCPIAPFSSLDDIYAYLDETTFGQQASVFATDLTKTGALLDVLANNVCRVNLNMQCsrgPDFFPFSGRKSSAQG 485
                 3455556666777***********99999999999**********999999998777....45556678899998887555568887777666699*********************************************************987.9******************************************66542666889*****************************************************************************************************9996543.....48****************************************************************************976655222667899999999877 PP

>> TIGR02299  HpaE: 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  155.0   0.0   1.7e-48   5.4e-46      32     457 ..      59     485 ..      42     496 .. 0.88

  Alignments for each domain:
  == domain 1    score: 155.0 bits;  conditional E-value: 1.7e-48
   TIGR02299  32 vakGgaedvdkavkaakkafk....kwaelkaaerkklllkladliekhadeiavlesldtGqalrlvrkavaraaenfrffadkaeeakdgetlpvd..eflnytvrvpvGvvglitPwnaPfmlstwkiaPalaaGntvvlkpaelsPltaarlaelvkeaglPdGvlnlvhGfGeeaGkalvehpavkavsfvGetatGsaimrng.adtlkrlslelGGksPvivfddadleraldavvfmifslnGerctassrllvqesiaedfveklkervkairvGdPldeetevGPlikeehlakvlsylevaekeGatilvGgkkakevldkelsrGnyvaPtvlvdadnkmriaqeeifGPvltvipfkdeeealelandieyGlagyvwtedvgralrvaaaleaGmiyvn..senvrdlr.tPfGGvkasGig 457
                  a+  ++d  +a +aa ++++    +wa  ++a+r   ++ l   ++kh ++i  +   +  ++ +  +k+  r+ +  +   d  +e   g +  ++    l    r pvGv+  + P+n Pf  +   + Pal +Gn+vv+k  +   l+     e+      P Gv+n+v G G+++  ++++  +v + +f+G +++ +a+m+    ++  +  l l  k+ +iv+ d +l+ a+   v    s+nG+rcta   ++v+esia++f+ek  + v ++++G P + + ++ Pl +++    +++ +e ae +Ga+++ G          ++++G +v P+vl  ++++mr+ +ee fGP+  + pf++ +++    +++ +G  + v++ d+ ++  + + l   ++ vn   +  r     Pf G k+s +g
  MMETSP1137-20121227|9630_1  59 QARMAESDALAALDAATASWNhgrgAWALASPAHRVAKIQELVVELKKHREQIVNVLMWEICKTSADAAKEFDRTMDYIQGTLDAHRELLGGDNAFKQigGVLAQVKRRPVGVMLNMGPFNYPFNETYCTLIPALLMGNSVVMKLPNVGCLAHICTMEV-YARVFPAGVVNFVSGAGRTTMPPIMQSGKVDIFAFIGGSKAADALMKTHpEPHRLKACLALDAKNLAIVMPDCNLDSAVAECVTGSLSYNGQRCTALKLMFVHESIAAQFTEKYCAAVDKMKMGLPWESGVKLTPLPEPSKPGYLRELIEDAEAKGAKVINGLG--------KQENGAFVRPSVLYPVSKEMRVWHEEQFGPLCPIAPFSSLDDIYAYLDETTFGQQASVFATDLTKTGALLDVLANNVCRVNlnMQCSRGPDfFPFSGRKSSAQG 485
                 55556666666666666665533348*******************************************************999999998877654443588999999*****************9999*******************99866555555.45568***************************************99875144555677899****************************************************************************************************932........3457*************************************************************999999998887766511666675432699999999876 PP

>> TIGR01780  SSADH: succinate-semialdehyde dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  149.8   0.0   7.4e-47   2.3e-44      16     433 ..      62     485 ..      50     494 .. 0.86

  Alignments for each domain:
  == domain 1    score: 149.8 bits;  conditional E-value: 7.4e-47
   TIGR01780  16 vsveeveeaieaaeealk....tykeltakerakllrkwyelilenkddlaklltlenGkplkeakgevlyaasyleWfaeeakrvyG.dviaslqsdkrllvikqPvGvaaiitPWnfPaamitrkagaalaaGctvvvkPaeqtPlsalalarlaekaGvPkgvlnvvtssaeevGkvltssPlvrkvsftGstavGkillkqsastvk.kvslelGGnaPlivfddadldqavegalaskfrnagqtcvcanrlyvhesvydefakklaekvkklkvGdGldegvtvGplinekavekvekhiedavekGakvvvgGdkreekggnffePtvlsdvtadmlvakeetfGPlapvfkfddeeevvalandtevGlaayffskdlakiirvaeelevGlvgvntglise...vvipfGGvkesGlG 433
                 ++ +++ +a++aa+ +++    ++   +  +r   +++++  + +++++++++l  e  k+ ++a  e   +  y++   +  + + G d +  +       v ++PvGv+  + P+n+P         +al  G +vv+k  +   l+ +   ++     +P+gv+n v + ++ +   + +s +v   +f G ++    l+k   +  + k  l l  +   iv++d +ld+av++ ++      gq c     ++vhes+  +f++k+  +v+k+k+G   ++gv   pl + +    + + ieda +kGakv+ g    ++++g f+ P vl  v+++m+v +ee fGPl+p+  f++ +++ a+ ++t +G  a +f+ dl+k   + + l   +  vn ++  +    + pf G k s  G
  MMETSP1137-20121227|9630_1  62 MAESDALAALDAATASWNhgrgAWALASPAHRVAKIQELVVELKKHREQIVNVLMWEICKTSADAAKEFDRTMDYIQGTLDAHRELLGgDNAFKQIGGVLAQVKRRPVGVMLNMGPFNYPFNETYCTLIPALLMGNSVVMKLPNVGCLAHICTMEVYA-RVFPAGVVNFVSGAGRTTMPPIMQSGKVDIFAFIGGSKAADALMKTHPEPHRlKACLALDAKNLAIVMPDCNLDSAVAECVTGSLSYNGQRCTALKLMFVHESIAAQFTEKYCAAVDKMKMGLPWESGVKLTPLPEPSKPGYLRELIEDAEAKGAKVINGL--GKQENGAFVRPSVLYPVSKEMRVWHEEQFGPLCPIAPFSSLDDIYAYLDETTFGQQASVFATDLTKTGALLDVLANNVCRVNLNMQCSrgpDFFPFSGRKSSAQG 485
                 55555666666666655422226666666666666666655566799******************************98777666665155555555666667889*****************999**************987777776665555443.469*****************************************988775443889*****************************************************************************************************9986..4677899***************************************************************99999998888877765412257899999999877 PP

>> TIGR03216  OH_muco_semi_DH: 2-hydroxymuconic semialdehyde dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  148.5   0.0   1.6e-46     5e-44      28     441 ..      60     463 ..      50     497 .. 0.90

  Alignments for each domain:
  == domain 1    score: 148.5 bits;  conditional E-value: 1.6e-46
   TIGR03216  28 aevaeagkeevdaavkaaraalkgewgklsvaeraellkkvadeierrfdeflaaevadtGkpkslaskldiprgaanfrvfadvvknvateafematpdGkealnyavrkplGvvgvispwnlplllltwkvapalacGntvvvkpseetpatatllaevmeevGvpkGvynvvhGfGpdsaGefltrhpdvdaitftGetrtGeaimkaaadgvk.evslelGGknaaivfadadldaavegvlrsaflntGqvclgtervyverpifdrfvaalkekaeklklGvpedeaaelGpliskehrdkvlsyyklaveeGatvvtGGGvpelgdelaeGayvqptiwtglpdsarvvkeeifGpvchvapfdseeeviarandtayGlaasvwtedlsrahrvakklevGvvwvns 441
                 a++ae+++    +a +a+ +  +g w  +s a+r++ ++++  e+++  ++ ++  + +  k ++ a+k +  r++   +   d  ++        +   G  +l  + r+p+Gv+  + p+n p+      + pal +Gn+vv+k  +    +     ev   v  p+Gv n v G G  +      +  +vd  +f G +++ +a+mk+  +  + +  l l  kn aiv+ d++ld+av+ ++  +++  Gq c + + ++v+  i  +f ++  ++++k+k+G p ++ ++l pl   ++   +    + a  +Ga+v+ G G      ++++Ga+v+p+++  ++++ rv +ee fGp+c +apf s +++ a  ++t++G  asv+++dl+++  + + l   v+ vn 
  MMETSP1137-20121227|9630_1  60 ARMAESDALAALDAATASWNHGRGAWALASPAHRVAKIQELVVELKKHREQIVNVLMWEICKTSADAAK-EFDRTMDYIQGTLDAHRELLGGDNAFKQIGG--VLAQVKRRPVGVMLNMGPFNYPFNETYCTLIPALLMGNSVVMKLPNVGCLAHICTMEVYARV-FPAGVVNFVSGAGRTTMPPI-MQSGKVDIFAFIGGSKAADALMKTHPEPHRlKACLALDAKNLAIVMPDCNLDSAVAECVTGSLSYNGQRCTALKLMFVHESIAAQFTEKYCAAVDKMKMGLPWESGVKLTPLPEPSKPGYLRELIEDAEAKGAKVINGLG------KQENGAFVRPSVLYPVSKEMRVWHEEQFGPLCPIAPFSSLDDIYAYLDETTFGQQASVFATDLTKTGALLDVLANNVCRVNL 463
                 56667777666677788888889**************************************99888776.7789999999999998887655444444555..999**********************999***************9999999998999998887.8************9988765.57789********************9988756889*****************************************************************************999999999999*************987......5789**************************************************************9999999999998885 PP

>> TIGR01722  MMSDH: methylmalonate-semialdehyde dehydrogenase (acylating)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  139.9   0.0   6.7e-44   2.1e-41      31     457 ..      61     488 ..      40     495 .. 0.88

  Alignments for each domain:
  == domain 1    score: 139.9 bits;  conditional E-value: 6.7e-44
   TIGR01722  31 kvaea.saeevdaavasaretfaawaetsvaerarvllryqallkehrdeiaklisaeqGktledakGdvarGlevvehacsvtslllG.etvesvakdvdvysirqplGvvaGitpfnfpamiplwmfplaiacGntfvlkpsekvpsaavklaellseaGapdGvlnvvhG.dkeavdrllehpdvkavsfvGsvavgeyiyetgsahgkrvqa..laGaknhmvvlpdadkeaaldalvgaavGaaGqrcmaisaavlvGaa.kelveeireraekvrvgagddpgaelGplitkqakervasliasgakeGaevlldGrgykveGyeeGnfvGitllervkpdmkiykeeifGpvlvvleadtleeaiklinespyGnGtaiftsdGaaarkf..qheievGqvGvnvpipvplpffsftGwkdslfGdlh 457
                 ++ae+ + + +daa as ++   awa +s a+r   +      lk+hr++i ++++ e  kt +da  +  r ++ ++ + +    llG +   +    v     r+p+Gv+  + pfn+p       +  a+  Gn+ v+k  +   +a +   e++     p Gv+n v G ++ ++  +++  +v   +f+G +++++ + +t      r++a     akn ++v+pd ++++a+ + v+ ++   Gqrc a+  + +  ++  ++ e+   +++k+++g   ++g +l pl ++++   + +li+++ ++Ga+v+ +G g      e+G fv +++l  v  +m++++ee fGp+  ++   +l++  + ++e+ +G+ +++f++d + +      +  +v +v +n+       ff f+G k+s  G l 
  MMETSP1137-20121227|9630_1  61 RMAESdALAALDAATASWNHGRGAWALASPAHRVAKIQELVVELKKHREQIVNVLMWEICKTSADAAKEFDRTMDYIQGTLDAHRELLGgDNAFKQIGGVLAQVKRRPVGVMLNMGPFNYPFNETYCTLIPALLMGNSVVMKLPNVGCLAHICTMEVYAR-VFPAGVVNFVSGaGRTTMPPIMQSGKVDIFAFIGGSKAADALMKTHPE-PHRLKAclALDAKNLAIVMPDCNLDSAVAECVTGSLSYNGQRCTALKLMFVHESIaAQFTEKYCAAVDKMKMGLPWESGVKLTPLPEPSKPGYLRELIEDAEAKGAKVI-NGLGK----QENGAFVRPSVLYPVSKEMRVWHEEQFGPLCPIAPFSSLDDIYAYLDETTFGQQASVFATDLTKTGALldVLANNVCRVNLNMQCSRGPDFFPFSGRKSSAQGTLS 488
                 55555245789**********************9999999999***********************************999988766652665555566778889****************9999888888**************99*****99999876.58********994578899***************99999998887654.44454411568***********************************987666554499***************9999******************************86.77765....69********************************************************99976555441145567899999999999999**********999765 PP

>> TIGR03250  PhnAcAld_DH: putative phosphonoacetaldehyde dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  139.8   0.0   6.9e-44   2.2e-41      60     460 ..      93     494 ..      56     502 .. 0.88

  Alignments for each domain:
  == domain 1    score: 139.8 bits;  conditional E-value: 6.9e-44
   TIGR03250  60 rskileraaellaarkeeisdlitlesGlskkdslyevgrvadvlklaaaevlrddgqifscdltphgkkrkvftlrepllgvisaitpfnhplnqvahkvapaiatnnrvvlkpsekvplsallladllyeaGlpeemlqvvtGdpreiadelitdehvdlvtftGgvaiGkliaaka...gykravlelGGndplivledadldraadlavkGsyknsGqrctavkrilvqesvadrftellvektralkyGdpldrsvdlGtvideaaaklfeerveeavaeGarll..lgnkrdGalyaptvldrvdpelalvreetfGpvspvirfkdiddairisnstayglssgvctnrldaitkliael..evGtvnvwevpGyrleltpfGGikdsGlGykeGvqealk 460
                 r + +++ +  l++++e+i +++  e   + +d+  e +r +d ++     +l    +++  d++ ++    +  ++    gv+  + pfn+p+n+    ++pa+   n vv+k  +   l+ +  +++ y   +p  +++ v G  r     ++ + +vd+ +f Gg     ++ ++    +  +a l l   +  iv+ d +ld a    v+Gs    Gqrcta+k ++v+es+a++fte   +   ++k+G p +  v+l  + +      + e +e+a a+Ga+++  lg++ +Ga   p vl  v++e+++ +ee fGp+ p+  f+++dd  +  + t++g  ++v + +l +   l+  l  +v  vn+        +  pf G k s  G    + ealk
  MMETSP1137-20121227|9630_1  93 RVAKIQELVVELKKHREQIVNVLMWEICKTSADAAKEFDRTMDYIQ----GTLDAHRELLGGDNAFKQIGGVLAQVKRRPVGVMLNMGPFNYPFNETYCTLIPALLMGNSVVMKLPNVGCLAHICTMEV-YARVFPAGVVNFVSGAGRTTMPPIMQSGKVDIFAFIGGSKAADALMKTHpepHRLKACLALDAKNLAIVMPDCNLDSAVAECVTGSLSYNGQRCTALKLMFVHESIAAQFTEKYCAAVDKMKMGLPWESGVKLTPLPEPSKPGYLRELIEDAEAKGAKVIngLGKQENGAFVRPSVLYPVSKEMRVWHEEQFGPLCPIAPFSSLDDIYAYLDETTFGQQASVFATDLTKTGALLDVLanNVCRVNLNMQCSRGPDFFPFSGRKSSAQGTL-SISEALK 494
                 444455555567889999*************************875....44555668899999988887777777777789********************************999999988887776.77889*******************************9998887776543221455789*****************************************************************************************************94446899********************************************************9999999988877644799999998888889999********99975.5777777 PP

>> TIGR03374  ABALDH: 1-pyrroline dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  138.5   0.0     2e-43   6.2e-41       3     436 ..      24     466 ..      22     493 .. 0.84

  Alignments for each domain:
  == domain 1    score: 138.5 bits;  conditional E-value: 2e-43
   TIGR03374   3 klliegklvagegekqavynpa....tgevileiaeasaeqvda..avraadaafae....wgqttpkaraelllkladaieenaevfaklesrncgkplhavlndeipaivdvfrffagaarc.lsglaageyleghtsmirrdpvgvvasiapwnyplmmaawklapalaagncvvlkpseitpltalklaelakdilpagvvnvlfgrgktvgdaltghekvrmvslt.gsiatgehilahtaasikrthmelggkapvivfddadidavvegvrtfgfynagqdctaacriyaqrgiydelveklgkavatlkigapedestelgplsslahlervsaaveeakalshikvitggekvkgkgyyfaptllagakqddaivqkevfgpvvsitvfddeeqvvrwandsryglassvwtkdvgrahrlsarlqygctwvnthfm 436
                 k+l +g + + eg  q vy p     t e+il   +a +++ da  a+ aa a++ +    w  ++p  r   +  l   +++  e++ ++   +  k   a    e    +d ++    a r  l g  a + + g  + ++r pvgv+  + p+nyp+  +   l pal  gn vv+k  ++  l+ +   e+ + ++pagvvn + g g+t   ++    kv + ++  gs a+ + + +h  +   ++ + l  k   iv+ d+++d+ v    t      gq cta   +++  +i  ++ ek  +av  +k+g p +   +l pl   ++   + +++e+a a +  kvi g  k+  +g + +p++l    ++  +  +e fgp+  i+ f   +++  + +++ +g  +sv++ d+ ++  l   l   +  vn  + 
  MMETSP1137-20121227|9630_1  24 KVLCNGIVSDWEGPVQEVYAPIfkegTQEKILIGYQARMAESDAlaALDAATASWNHgrgaWALASPAHRVAKIQELVVELKKHREQIVNVLMWEICKTS-ADAAKEFDRTMDYIQGTLDAHRElLGGDNAFKQIGGVLAQVKRRPVGVMLNMGPFNYPFNETYCTLIPALLMGNSVVMKLPNVGCLAHICTMEVYARVFPAGVVNFVSGAGRTTMPPIMQSGKVDIFAFIgGSKAADALMKTHPEPHRLKACLALDAKNLAIVMPDCNLDSAVAECVTGSLSYNGQRCTALKLMFVHESIAAQFTEKYCAAVDKMKMGLPWESGVKLTPLPEPSKPGYLRELIEDAEAKG-AKVINGLGKQ-ENGAFVRPSVLYPVSKEMRVWHEEQFGPLCPIAPFSSLDDIYAYLDETTFGQQASVFATDLTKTGALLDVLANNVCRVNLNMQ 466
                 8999************999995333377888877777777666421445555544433333778889999888888888888777777666655555543.3445789999999999888888616788999**********************************************************************************************99865168888888889999999999******************976666666666666***************************************************************987.5899887665.578999*********************************************************99999999888888887644 PP

>> TIGR01237  D1pyr5carbox2: putative delta-1-pyrroline-5-carboxylate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  134.9   0.0   2.6e-42   8.1e-40      57     446 ..      53     441 ..      28     486 .. 0.92

  Alignments for each domain:
  == domain 1    score: 134.9 bits;  conditional E-value: 2.6e-42
   TIGR01237  57 sevvGkvakasvedaeqalqaakkafe....ewkktdveeraaillkaaailkrrrhelsallvlevGkiyaeadaevaeaidfleyyaremikla.kskevlsieGeknrylyiplGvavvispwnfplailvGmtvapivtGncvvlkpaeaatviaaklveileeaGlpkGvlqfvpGkGsevGeylvdhpktrlitftGsrevGlriyedaakvqpGqkhlkrviaelGGkdavivdesadieqavaaavtsafGfaGqkcsaasrvvvlekvydevverfveatkslkvgktdeadvqvgpvidqksfdkikeyielgkaegklvlggedddskGyfikptifkdvdrkarlaqeeifGpvvavlrakdfdealeiansteygltGgvis 446
                 +  +G  a+++  da  al+aa+++++    +w   ++ +r+a +      lk+ r ++  +l+ e+ k+ a+a  e   ++d+++   +   +l  +++  ++i G   +    p Gv + + p+n+p+     + + +++ Gn+vv+k  +   +     +e+  +   p+Gv++fv G G+     +++  k+ + +f G    G +  +   k  p  + lk  +a l  k+  iv  + +++ ava  vt+++ ++Gq+c+a   + v+e++  ++ e++  a   +k+g + e+ v+++p+ +      ++e ie ++a+g  v+ g +++++G f++p+++  v ++ r+  ee fGp+  +   +  d+     ++t +g   +v++
  MMETSP1137-20121227|9630_1  53 KILIGYQARMAESDALAALDAATASWNhgrgAWALASPAHRVAKIQELVVELKKHREQIVNVLMWEICKTSADAAKEFDRTMDYIQGTLDAHRELLgGDNAFKQIGGVLAQVKRRPVGVMLNMGPFNYPFNETYCTLIPALLMGNSVVMKLPNVGCLAHICTMEVY-ARVFPAGVVNFVSGAGRTTMPPIMQSGKVDIFAFIG----GSKAADALMKTHPEPHRLKACLA-LDAKNLAIVMPDCNLDSAVAECVTGSLSYNGQRCTALKLMFVHESIAAQFTEKYCAAVDKMKMGLPWESGVKLTPLPEPSKPGYLRELIEDAEAKGAKVINGLGKQENGAFVRPSVLYPVSKEMRVWHEEQFGPLCPIAPFSSLDDIYAYLDETTFGQQASVFA 441
                 4569999****************999744447999****************************************************9999998873666778899999*****************************************9888777666667765.5679******************************99....566777888999**999*98875.99************************************************************************************************************************************************999999999998887766 PP

>> TIGR03240  arg_catab_astD: succinylglutamic semialdehyde dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  121.7   0.0   2.4e-38   7.7e-36      28     444 ..      59     480 ..      34     491 .. 0.83

  Alignments for each domain:
  == domain 1    score: 121.7 bits;  conditional E-value: 2.4e-38
   TIGR03240  28 qgkaasaaqvekavkaarkafp....awarlsleeriavvkrfaelleeekeelaeviaketgkplweartevasmvakvaisikayeertGeke..seladakavlrhrphGvlavfGpynfpGhlpnGhivpallaGntvvfkpseltplvaeetvklwekaGlpaGvlnlvqGaretGk.alaaeedidGllftGssntGallhrqlagrpekila.lelGGnnplvveevkdidaavhlivqsafisaGqrctcarrllvkdgaeGdallerlvevaerltvgk.ydaepqpflGavisekaakellaaqekllalggksllelkqleeeaalltpgii.dvtevaevpdeeyfgpllkvlrykdfdealaeanntrfGlaaGllsddrelydkflleiraGi..vnwnkpltGassaapfGGiG 444
                 q++ a+++   +a+ aa ++++    awa +s ++r+a +++    l++++e++ +v+  e  k+  +a+ e    +  ++ ++ a++e  G  +  ++++   a ++ rp Gv+  +Gp+n+p       ++pall Gn+vv+k  ++  l+   t++++++   paGv+n+v Ga  t    ++++ ++d + f G s++   l ++  + p+++ a l l   n  +v    ++d+av++ v  ++   Gqrct  + ++v+++   + + e+  +  +++++g  ++      l ++        l +  e+++a+g+k +      +e+ a+++p+++  v++   v  ee fgpl  +  ++++d+  a  ++t fG  a + + d ++   +l      +  vn n + +      pf G  
  MMETSP1137-20121227|9630_1  59 QARMAESD-ALAALDAATASWNhgrgAWALASPAHRVAKIQELVVELKKHREQIVNVLMWEICKTSADAAKEFDRTMDYIQGTLDAHRELLGGDNafKQIGGVLAQVKRRPVGVMLNMGPFNYPFNETYCTLIPALLMGNSVVMKLPNVGCLAHICTMEVYARV-FPAGVVNFVSGAGRTTMpPIMQSGKVDIFAFIGGSKAADALMKTHPE-PHRLKAcLALDAKNLAIVMPDCNLDSAVAECVTGSLSYNGQRCTALKLMFVHES-IAAQFTEKYCAAVDKMKMGLpWESGV--KLTPLPEPSKPGYLRELIEDAEAKGAKVING-LGKQENGAFVRPSVLyPVSKEMRVWHEEQFGPLCPIAPFSSLDDIYAYLDETTFGQQASVFATDLTKTGALLDVLANNVcrVNLNMQCSRGPDFFPFSGRK 480
                 44444433.334555555554322239**************************************************************998765236889999********************************************************9875.9**********86665516888899****************998765.5555443888999*99****************************8888887765.567899***********995366554..4667766666677777788888888876555.56677889*****9846999999***************************************999998888765554443377777777777777777755 PP

>> TIGR01238  D1pyr5carbox3: delta-1-pyrroline-5-carboxylate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.7   0.0   3.2e-30     1e-27      56     441 ..      47     442 ..      27     486 .. 0.84

  Alignments for each domain:
  == domain 1    score: 94.7 bits;  conditional E-value: 3.2e-30
   TIGR01238  56 knpadrkdivGqvseadaaevqeavdsavaafa....ewsatdakeraailerladlleshmpelvallvreaGktlsnaiaevreavdflryyakqvedvldeesaka.............lGavvcispwnfplaiftGqiaaalaaGntviakpaeqtsliaaravellqeaGvpagviqllpGrGedvGaaltsderiaGviftGstevarlinkalakredapvpliaetGGqnamivdstalaeqvvadvlasafdsaGqrcsalrvlcvqedvadrvltlikGamdelkvgkpirlttdvGpvidaeakqnllahiekmkakakkvaqvkleddvesekgtfvaptlf.el.ddldelkkevfGpvlhvvrykadeldkvvdkinakGygltlGvhsr 441
                 k+ +++k+++G+     ++++ +a+d+a a+       w    ++ r a+++ l + l++h  ++v +l+ e  kt  +a +e   ++d+++   +  ++ l+ ++a               +G+++ + p+n+p+      +  al  Gn+v+ k  +   l    ++e+     +pagv++++ G+G +    + +  ++   +f G ++ a  + k+  + +  ++ l  +   +n  iv      +  va+ ++ ++   Gqrc+al++++v e +a +  +    a+d++k+g p +    + p+ +      l + ie  +ak+ kv +   ++    e+g fv+p ++  + +++   ++e+fGp+  +  +    ld++   ++++ +g    v + 
  MMETSP1137-20121227|9630_1  47 KEGTQEKILIGYQARMAESDALAALDAATASWNhgrgAWALASPAHRVAKIQELVVELKKHREQIVNVLMWEICKTSADAAKEFDRTMDYIQGTLDAHRELLGGDNAFKqiggvlaqvkrrpVGVMLNMGPFNYPFNETYCTLIPALLMGNSVVMKLPNVGCLAHICTMEVYA-RVFPAGVVNFVSGAGRTTMPPIMQSGKVDIFAFIGGSKAADALMKTHPEPHRLKACLALD--AKNLAIVMPDCNLDSAVAECVTGSLSYNGQRCTALKLMFVHESIAAQFTEKYCAAVDKMKMGLPWESGVKLTPLPEPSKPGYLRELIEDAEAKGAKVINGLGKQ----ENGAFVRPSVLyPVsKEMRVWHEEQFGPLCPIAPFS--SLDDIYAYLDETTFGQQASVFAT 442
                 455788999**998888888899999998876422227**9**************************************************9998888888877654445888899999988**********************************99999988887877765.579*****************************************9998776666444333..4566666666666777788889999*************************************************999999999********9998888766655....79******7762442679999***********9996..68899888888888887777654 PP

>> TIGR01236  D1pyr5carbox1: 1-pyrroline-5-carboxylate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.2   0.0   2.7e-27   8.4e-25      62     467 ..      58     454 ..      33     486 .. 0.84

  Alignments for each domain:
  == domain 1    score: 85.2 bits;  conditional E-value: 2.7e-27
   TIGR01236  62 kltnateedvkkaveaaldakke....Wselpfadraaiflkaadlls..gkyreeilaatmlgqsktvyqaeidavaelidffrfnvkyarelleqqP.svsapgelnkveyrpleGfvaaisPfnftaiaanlagaPa.lmGnvvvWkPsktavlsnyllmkileeaGlPpgvinfvpadgvkvsdvvladkdlaalhftGstavfkelwkkvasnldkyrnfPrivGetGGkdfvlvhpsadveevvaatirgafeyqGqkcsaasrlyvpkslwkelkeellaelkkvkvgdvddlssfmgavideksfakivkviekakkdpeeleilaGGkyddskGyfvePtvveskdPkeklmkeeifGPvltvyvydddkykeilevvdstskyaltGavfakdreaieeaekkl 467
                    +  e+d+ +a++aa +++++    W+    a+r a   k  +l+    k+re+i  + m +  kt  +a  +     +d+++  +   rell+     ++  g+l +v+ rp+ G +  + Pfn+    +  +  Pa lmGn vv k  ++  l+   +m++     +P+gv+nfv++ g +    ++ + ++    f G  +    l+k+   + ++ +    +      k++ +v p  +++++va  + g++ y+Gq+c+a   ++v +s+  +++e+  a  +k+k+g + +  + ++++ +  +   ++++ie+a ++    +++ G    + +G fv+P+v+     + ++ +ee fGP+  +   + +  ++i   +d+t+ ++   +vfa d        ++l
  MMETSP1137-20121227|9630_1  58 YQARMAESDALAALDAATASWNHgrgaWALASPAHRVA---KIQELVVelKKHREQIVNVLMWEICKTSADAAKE-FDRTMDYIQGTLDAHRELLGGDNaFKQIGGVLAQVKRRPV-GVMLNMGPFNYPFNETYCTLIPAlLMGNSVVMKLPNVGCLAHICTMEVYAR-VFPAGVVNFVSGAGRTTMPPIMQSGKVDIFAFIGGSKAADALMKTHP-EPHRLKA--CL--ALDAKNLAIVMPDCNLDSAVAECVTGSLSYNGQRCTALKLMFVHESIAAQFTEKYCAAVDKMKMGLPWESGVKLTPLPEPSKPGYLRELIEDAEAKG--AKVING-LGKQENGAFVRPSVLYPVSKEMRVWHEEQFGPLCPIA--PFSSLDDIYAYLDETT-FGQQASVFATDLTKTGALLDVL 454
                 44555678888899999888764322276666666654...555555422699****************999666.5699*************9998875789999*********8.8999******9999999999999459*********************9865.69************99999999999999999*999999888877533.2233333..33..3568*****************************************************************************************9977..566665.445678***************************9876..5578999999999986.8999999999976665555555 PP

>> TIGR02278  PaaN-DH: phenylacetic acid degradation protein paaN
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.9   0.0   1.8e-22   5.7e-20     140     444 ..     164     462 ..      57     468 .. 0.78

  Alignments for each domain:
  == domain 1    score: 68.9 bits;  conditional E-value: 1.8e-22
   TIGR02278 140 iltpksGvavqinafnfPvwGlleklaPaflaGvPalvkPatatayvaealvklivesgllPeGalqlivGsvgdlldhld...srdvvaftGsaata.eklrahpnvleksirfsaeadslnaavlGedvtpdepefdlfvkeivreltakaGqkctairrvlvPkalveavlealkarlakvklGdPreedvklGplvsveqredveaavaallaagaevrlgdpeeldGaffaPtlllaeepeadavhateafGPvatllayddraeavrlaarGeGslvaslvtadpevarqfilglaafhGrlh 444
                 +     Gv +++  fn+P       l Pa+l G  +++k     + +a+ +  + v ++++P G +++++G+ +  +  +    + d  af G  ++a + +++hp+  +  ++     d+ n a++ +d +     +d  v e v    +  Gq+cta++ ++v ++  ++ +e   a ++k+k+G P e +vkl pl +  +   +++ ++   a+ga+v  g  ++++Gaf+ P +l+    e   v + e fGP+  + ++++ ++             as++++d + +  ++  la+ + r++
  MMETSP1137-20121227|9630_1 164 VKRRPVGVMLNMGPFNYPFNETYCTLIPALLMGNSVVMKLP-NVGCLAHICT-MEVYARVFPAGVVNFVSGAGRTTMPPIMqsgKVDIFAFIGGSKAAdALMKTHPEPHR--LKACLALDAKNLAIVMPDCN-----LDSAVAECVTGSLSYNGQRCTALKLMFVHESIAAQFTEKYCAAVDKMKMGLPWESGVKLTPLPEPSKPGYLRELIEDAEAKGAKVINGLGKQENGAFVRPSVLYPVSKEM-RVWHEEQFGPLCPIAPFSSLDDIYAYLDETTFGQQASVFATDLTKTGALLDVLANNVCRVN 462
                 44445699999999********************9999954.4566776654.567799*************99998766411145788898655555055688887655..566667788899**999987.....9999***************************************************************************************************9776665.566679***********99999877777666666788888887777777777777777766 PP

>> TIGR02288  PaaN_2: phenylacetic acid degradation protein paaN
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.7   0.1   7.3e-05     0.023     193     348 ..     168     320 ..     160     342 .. 0.73
   2 ?   -3.2   0.0       1.2   3.9e+02     413     449 ..     382     413 ..     362     454 .. 0.68

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 7.3e-05
   TIGR02288 193 prGialvigcstfptwntypGlfaslatGnavlvkphpgailplaltvkvarevlaeaGfdpnlvalaaeeaeeevaqrlaldpavrivdftGsnafGewleq.narqaqv...ytekaGvntviiestddlkavlrnlafslslysGqmctttqailvp 348
                 p G+ l +g   +p  +ty  l  +l  Gn+v++k  +   l    t++v  +v+  aG    +v ++ + a+  +   +  + +v i  f G++   + l + +    ++    +  a    +++   +   av++ ++ sls y Gq ct+ + ++v 
  MMETSP1137-20121227|9630_1 168 PVGVMLNMGPFNYPFNETYCTLIPALLMGNSVVMKLPNVGCLAHICTMEVYARVFP-AG----VVNFV-SGAGRTTMPPIMQSGKVDIFAFIGGSKAADALMKtHPEPHRLkacLALDAKNLAIVMPDCNLDSAVAECVTGSLS-YNGQRCTALKLMFVH 320
                 7799999999*************************999999999999999888863.33....34433.344666667777789999999998776666665414433333000333333334455555555788888888887.999999999888774 PP

  == domain 2    score: -3.2 bits;  conditional E-value: 1.2
   TIGR02288 413 klehpefpdarvrtplllkvdaadeaayaeerfGpia 449
                 k e    ++a vr  +l  v   +   + ee+fGp++
  MMETSP1137-20121227|9630_1 382 KQE----NGAFVRPSVLYPVS-KEMRVWHEEQFGPLC 413
                 433....34556655555543.455788899999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (530 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       137  (0.0333983); expected 82.0 (0.02)
Passed bias filter:                      119  (0.0290102); expected 82.0 (0.02)
Passed Vit filter:                        22  (0.00536324); expected 4.1 (0.001)
Passed Fwd filter:                        13  (0.00316919); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.62u 0.17s 00:00:00.79 Elapsed: 00:00:00.77
# Mc/sec: 908.50
//
Query:       MMETSP1137-20121227|9631_1  [L=124]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (124 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        41  (0.00999512); expected 82.0 (0.02)
Passed bias filter:                       38  (0.00926377); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.12s 00:00:00.27 Elapsed: 00:00:00.28
# Mc/sec: 584.52
//
Query:       MMETSP1137-20121227|9632_1  [L=170]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (170 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        41  (0.00999512); expected 82.0 (0.02)
Passed bias filter:                       36  (0.00877621); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.15s 00:00:00.31 Elapsed: 00:00:00.46
# Mc/sec: 487.79
//
Query:       MMETSP1137-20121227|9633_1  [L=89]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (89 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       197  (0.0480254); expected 82.0 (0.02)
Passed bias filter:                      145  (0.0353486); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.13s 00:00:00.28 Elapsed: 00:00:00.63
# Mc/sec: 186.46
//
Query:       MMETSP1137-20121227|9634_1  [L=278]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (278 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        66  (0.0160897); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.16s 00:00:00.37 Elapsed: 00:00:01.00
# Mc/sec: 366.93
//
Query:       MMETSP1137-20121227|9635_1  [L=205]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (205 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       163  (0.0397367); expected 82.0 (0.02)
Passed bias filter:                      133  (0.0324232); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.17s 00:00:00.39 Elapsed: 00:00:00.43
# Mc/sec: 629.25
//
Query:       MMETSP1137-20121227|9636_1  [L=237]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.3e-26   89.9   2.6    3.7e-25   86.4   0.4    2.1  2  TIGR00990 3a0801s09: mitochondrial precursor proteins import receptor
      4e-07   26.1   4.8    5.5e-07   25.7   3.3    1.2  1  TIGR02917 PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein
    0.00023   18.6   0.8     0.0004   17.8   0.4    1.5  1  TIGR02521 type_IV_pilW: type IV pilus biogenesis/stability protein PilW
      0.001   16.7   1.1     0.0043   14.6   0.7    1.8  1  TIGR02552 LcrH_SycD: type III secretion low calcium response chaperone LcrH/SycD
     0.0063   15.0   0.2      0.012   14.0   0.1    1.5  1  TIGR02795 tol_pal_ybgF: tol-pal system protein YbgF


Domain annotation for each model (and alignments):
>> TIGR00990  3a0801s09: mitochondrial precursor proteins import receptor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.4   0.4   4.5e-28   3.7e-25     103     218 ..      40     164 ..       5     170 .. 0.74
   2 !    3.4   0.1    0.0063       5.2     103     138 ..     176     210 ..     164     221 .. 0.83

  Alignments for each domain:
  == domain 1    score: 86.4 bits;  conditional E-value: 4.5e-28
   TIGR00990 103 sadelpeidessvvnlseeerkky....aaklkekGnkayrnkdfdkaielyskalllked.....Pvyysnraacynaladlekvvedttaaleldpdyvkalnrranaydqlgkyadalldlt 218
                 sa e +  + ++  ++ e e +k     a+++ke+Gn  +    +++a++ly+ a++  ++      v+y+nraacy  + +++ v+ed t al ++p+y+kal+rra+a++ lg+ ++al d+ 
  MMETSP1137-20121227|9636_1  40 SAAEEGSEELTTSGGMEEGEAEKIalvqALAFKEQGNTHFVAGRYEEALDLYTEAIETAPEnsaerAVFYANRAACYAKMEEFDAVIEDCTSALGVQPEYIKALLRRAQAHEALGRPTEALEDMR 164
                 33334433444444555555555411226899************************99875333337******************************************************9985 PP

  == domain 2    score: 3.4 bits;  conditional E-value: 0.0063
   TIGR00990 103 sadelpeidessvvnlseeerkkyaaklkekGnkay 138
                 +a++ p  + +s ++l ee++++   klke+Gn + 
  MMETSP1137-20121227|9636_1 176 AANSIPRLEAASAAKL-EEQKEEMLGKLKELGNSVL 210
                 4678899999999998.6789999*********876 PP

>> TIGR02917  PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.7   3.3   6.7e-10   5.5e-07     125     229 ..      68     176 ..      29     207 .. 0.77

  Alignments for each domain:
  == domain 1    score: 25.7 bits;  conditional E-value: 6.7e-10
   TIGR02917 125 aellalrglAaLglgeleeAqksleqAlaiapksleakl....glAqlalaenkldearalvdevLtadpknvdAllLkgdlllssgnieeAlaayrkaielkpnaiaa 229
                 a +   +g++++  g+ eeA + + +A + ap+++  ++      A   ++ +++d + +    +L  +p+ ++All +++   ++g   eAl+++rk++el+p  +aa
  MMETSP1137-20121227|9636_1  68 ALAFKEQGNTHFVAGRYEEALDLYTEAIETAPENSAERAvfyaNRAACYAKMEEFDAVIEDCTSALGVQPEYIKALLRRAQAHEALGRPTEALEDMRKIVELDPSVKAA 176
                 3344558*********************999988654321111445555566688888888999****************************************86654 PP

>> TIGR02521  type_IV_pilW: type IV pilus biogenesis/stability protein PilW
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.4   4.9e-07    0.0004     113     195 ..      82     166 ..      75     194 .. 0.77

  Alignments for each domain:
  == domain 1    score: 17.8 bits;  conditional E-value: 4.9e-07
   TIGR02521 113 kkyeeAeqqfeaAiedpk..YeqparsyeNaglcalkagdtekaekyltralkidpkrpesllelaelklkkgqyaeArallery 195
                 ++yeeA   +++Aie+      ++a  y N + c++k ++++ + +  t al ++p++ ++ll  a+ +   g+ +eA + + + 
  MMETSP1137-20121227|9636_1  82 GRYEEALDLYTEAIETAPenSAERAVFYANRAACYAKMEEFDAVIEDCTSALGVQPEYIKALLRRAQAHEALGRPTEALEDMRKI 166
                 7888888888888887431256666678888888888888888888888888888888888888888888877777777666554 PP

>> TIGR02552  LcrH_SycD: type III secretion low calcium response chaperone LcrH/SycD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.7   5.3e-06    0.0043      25     119 ..      75     173 ..      67     189 .. 0.83

  Alignments for each domain:
  == domain 1    score: 14.6 bits;  conditional E-value: 5.3e-06
   TIGR02552  25 AYnlyqqgkyeeAeklFqlLaaldpteak....ywlgLaaclqalkeyeeAiaaYalaaaldlddprpvyhaaecllalgekeeAlkaLklaieiaeek 119
                 + +++ +g+yeeA+ l++  +   p ++     + +  aac+ +++e++  i+  + a+ ++++  ++++++a+ + alg++ eAl++++  +e++ + 
  MMETSP1137-20121227|9636_1  75 GNTHFVAGRYEEALDLYTEAIETAPENSAeravFYANRAACYAKMEEFDAVIEDCTSALGVQPEYIKALLRRAQAHEALGRPTEALEDMRKIVELDPSV 173
                 567899999999999998777766655422333888999************************************************999999988755 PP

>> TIGR02795  tol_pal_ybgF: tol-pal system protein YbgF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.1   1.5e-05     0.012       7     115 ..      73     179 ..      68     183 .. 0.81

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 1.5e-05
   TIGR02795   7 kaallvlkegdYakAeqaFkaFlkkYPkstlapnAqYwlGealyakkkykdAakaflevvkkypksekapdallklgeslqelgqkekAkktlqevikrYPkssaakla 115
                 ++++ ++ +g+Y++A + +++ +++ P+++      Y    a yak +  dA    ++ +++   ++   +all+ +++ ++lg+ ++A + ++++++  P+ +aa+++
  MMETSP1137-20121227|9636_1  73 EQGNTHFVAGRYEEALDLYTEAIETAPENSAERAVFYANRAACYAKMEEFDA--VIEDCTSALGVQPEYIKALLRRAQAHEALGRPTEALEDMRKIVELDPSVKAAANS 179
                 67889999*******************9987766666555555665554444..456777777778888889*****************************99999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (237 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       137  (0.0333983); expected 82.0 (0.02)
Passed bias filter:                      103  (0.0251097); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.29u 0.13s 00:00:00.42 Elapsed: 00:00:00.66
# Mc/sec: 473.96
//
Query:       MMETSP1137-20121227|9637_1  [L=400]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.9e-15   53.4   3.3    4.5e-08   30.1   2.2    2.6  2  TIGR01224 hutI: imidazolonepropionase
    4.6e-08   30.3   0.0     0.0015   15.4   0.0    2.2  2  TIGR02967 guan_deamin: guanine deaminase
    6.5e-07   26.4   1.6     0.0012   15.7   0.0    2.5  3  TIGR02318 phosphono_phnM: phosphonate metabolism protein PhnM
      5e-06   23.1   0.0    9.2e-06   22.2   0.0    1.3  1  TIGR01178 ade: adenine deaminase
    7.4e-05   19.5   1.0     0.0033   14.1   0.0    2.8  3  TIGR03178 allantoinase: allantoinase
    0.00032   17.5   0.0     0.0035   14.1   0.0    2.1  2  TIGR03314 Se_ssnA: putative selenium metabolism protein SsnA
     0.0047   13.7   0.1        0.5    7.1   0.0    2.5  3  TIGR00221 nagA: N-acetylglucosamine-6-phosphate deacetylase
     0.0067   13.2   0.0      0.011   12.6   0.0    1.3  1  TIGR02033 D-hydantoinase: dihydropyrimidinase
  ------ inclusion threshold ------
      0.026   11.5   0.0       0.18    8.7   0.0    2.0  2  TIGR01975 isoAsp_dipep: beta-aspartyl peptidase


Domain annotation for each model (and alignments):
>> TIGR01224  hutI: imidazolonepropionase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   0.0   6.7e-08   3.1e-05       5      51 ..      10      57 ..       7      61 .. 0.91
   2 !   30.1   2.2     1e-10   4.5e-08     182     353 ..     169     354 ..      68     359 .. 0.73

  Alignments for each domain:
  == domain 1    score: 20.8 bits;  conditional E-value: 6.7e-08
   TIGR01224  5 ailveegkiaaigqkaalpge.eaakiidleGklvvPGlvDpHtHlvf 51
                 ++v ++ ia++g+ a+lp+e   ++ +d++  +++PGl+D+H H+ f
  MMETSP1137-20121227|9637_1 10 CVAVLGELIAFVGSLAELPAElARLNRVDYGDATIMPGLIDAHVHIEF 57
                5889999*************9667899******************988 PP

  == domain 2    score: 30.1 bits;  conditional E-value: 1e-10
   TIGR01224 182 aeavDvFcekgvFsveqsrrilkaaqeaGlavklHaeelkalggaelaaklgavsadHleeasded.........ikalaeagtvav.lLPgt....af.lLr.eaapparklidekvivalatDln..PgsspllslqlilslavtllkltaeealaaatvnaAqalglgeekGtleeGkdadlvvlsa 353
                 ++++     + +F+ ++ r  ++ a++aGl+v  Ha  ++ +++ +     +  +++H   +++++         ++ala+agt +   +P+      f  L+ +  +  r ++ ++v  a +tD    P +   ++l   l +     +++a++ l+ at +aA+a  l++++G l++G+ adl+v+  
  MMETSP1137-20121227|9637_1 169 VRTAGTNPAQSAFTSKEMRIAVACAAAAGLRVAAHAHGVHGIRACAD---AKVGTVEHCSWVDERGrwgcvdrkcAAALAQAGTFVCpTVPASwgqsRFqGLKqTMGAAYRVMLSAGVRFAAGTDSGaiP-NVWHHQLLDGLLVFGDAAEMSAAQLLRCATSEAAAACALEATTGMLTDGYAADLLVVPG 354
                 555555566889************************99988876543...3444455555444433222222222899*****965426776522223425885666788999************76225.444444444455556789*************************************9976 PP

>> TIGR02967  guan_deamin: guanine deaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.8   0.0   2.1e-05    0.0095      16      54 ..      18      55 ..       5      68 .. 0.75
   2 !   15.4   0.0   3.4e-06    0.0015     265     361 ..     250     353 ..     217     381 .. 0.69

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 2.1e-05
   TIGR02967 16 ieavgeyaelkeelseevevedlrkkliipGliDtHvHy 54
                i+ vg+ ael +el  + +  d+ +  i+pGliD HvH 
  MMETSP1137-20121227|9637_1 18 IAFVGSLAELPAELA-RLNRVDYGDATIMPGLIDAHVHI 55
                555577777777666.456668999*************7 PP

  == domain 2    score: 15.4 bits;  conditional E-value: 3.4e-06
   TIGR02967 265 afCPtSNlflgsglfd.lkka..eekevkvglgtDvggGtsfslLqtlreaykvsqlq....gkrlsaveafylaTlggakaldlddkiGnlevgkeaDlvvld 361
                   CPt     g + f+ lk++   + +v ++ g   ++Gt    + ++ +      l      +++sa++ +  aT ++a a  l+ + G l+ g++aDl+v+ 
  MMETSP1137-20121227|9637_1 250 FVCPTVPASWGQSRFQgLKQTmgAAYRVMLSAGVRFAAGTDSGAIPNVWHHQLLDGLLvfgdAAEMSAAQLLRCATSEAAAACALEATTGMLTDGYAADLLVVP 353
                 35888888888877763555533444555555556677777777777666555555557777899************************************985 PP

>> TIGR02318  phosphono_phnM: phosphonate metabolism protein PhnM
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   2.5e-06    0.0012      34      92 ..      32      94 ..       9      99 .. 0.74
   2 ?   -2.9   0.0       1.2   5.4e+02     205     228 ..     180     203 ..     142     208 .. 0.63
   3 !    9.3   0.0   0.00022       0.1     309     357 ..     305     353 ..     298     361 .. 0.82

  Alignments for each domain:
  == domain 1    score: 15.7 bits;  conditional E-value: 2.5e-06
   TIGR02318 34 alaeaidleGdlllPGlidlHtDnlerevsPRpgvqwpidaavvehdkql.......iaaGiTTvf 92
                a  ++ d +   ++PGlid H   +  e+ PR g + +++ +v++hd+q+       + +GiTT+ 
  MMETSP1137-20121227|9637_1 32 ARLNRVDYGDATIMPGLIDAH---VHIEFDPRYGLHDQPELSVSQHDRQMqvraaamARHGITTAR 94
                334458999999********9...56689******************9863333322668999975 PP

  == domain 2    score: -2.9 bits;  conditional E-value: 1.2
   TIGR02318 205 evaeakrkeiaalarerkialaSH 228
                   ++++++  +a a+++++++a H
  MMETSP1137-20121227|9637_1 180 AFTSKEMRIAVACAAAAGLRVAAH 203
                 333445545556666677777776 PP

  == domain 3    score: 9.3 bits;  conditional E-value: 0.00022
   TIGR02318 309 aafqlaekaegleLeeavklvtknpAkavgls.drGeiakGkrADlvlve 357
                 + +   +   +++ ++ ++ +t+ +A a  l+   G++  G  ADl++v 
  MMETSP1137-20121227|9637_1 305 GLLVFGDA-AEMSAAQLLRCATSEAAAACALEaTTGMLTDGYAADLLVVP 353
                 54444444.567999*****************999************996 PP

>> TIGR01178  ade: adenine deaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.2   0.0     2e-08   9.2e-06      22      60 ..      11      56 ..       7      58 .. 0.93

  Alignments for each domain:
  == domain 1    score: 22.2 bits;  conditional E-value: 2e-08
   TIGR01178 22 iaiaegviagvgkee.......gvkvidakgkvvvPgfiDaHiHiE 60
                +a+  + ia+vg+          ++++d  +++++Pg+iDaH+HiE
  MMETSP1137-20121227|9637_1 11 VAVLGELIAFVGSLAelpaelaRLNRVDYGDATIMPGLIDAHVHIE 56
                7999999*****998899999999*********************9 PP

>> TIGR03178  allantoinase: allantoinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.0   7.1e-06    0.0033      20      61 ..      11      56 ..       3      67 .. 0.72
   2 ?   -0.4   0.1      0.18        83     157     209 ..     180     232 ..     132     253 .. 0.70
   3 ?    2.3   0.0     0.028        13     337     383 ..     305     352 ..     297     357 .. 0.85

  Alignments for each domain:
  == domain 1    score: 14.1 bits;  conditional E-value: 7.1e-06
   TIGR03178 20 vavkdgkiaeigqed....lkeaakiidvsgkvvlPGvvDahvhin 61
                vav ++ ia +g+      + +  + +d ++ +++PG++Dahvhi+
  MMETSP1137-20121227|9637_1 11 VAVLGELIAFVGSLAelpaELARLNRVDYGDATIMPGLIDAHVHIE 56
                566666666666655322122334568999**************96 PP

  == domain 2    score: -0.4 bits;  conditional E-value: 0.18
   TIGR03178 157 evdeeqlakgmreiarlgklllvhaesdkilsklvakkkgkvsaeaylasRPv 209
                 + ++++++ +++ +a++g  ++ ha   + +++ + +k g v+  ++++ R +
  MMETSP1137-20121227|9637_1 180 AFTSKEMRIAVACAAAAGLRVAAHAHGVHGIRACADAKVGTVEHCSWVDERGR 232
                 34566777788888888999999998888888888888888888888888865 PP

  == domain 3    score: 2.3 bits;  conditional E-value: 0.028
   TIGR03178 337 vlfeeakkrglplekiarllaanpaklvgL.akkGriavGkDaDfvlv 383
                  l+  + + +++  ++ r  + ++a+   L a+ G +  G+ aD+++v
  MMETSP1137-20121227|9637_1 305 GLLVFGDAAEMSAAQLLRCATSEAAAACALeATTGMLTDGYAADLLVV 352
                 555556677899999999999*********8899***********998 PP

>> TIGR03314  Se_ssnA: putative selenium metabolism protein SsnA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.0   7.6e-06    0.0035      21      67 ..       9      55 ..       6      66 .. 0.95
   2 ?    0.8   0.0     0.081        37     355     379 ..     331     355 ..     277     364 .. 0.82

  Alignments for each domain:
  == domain 1    score: 14.1 bits;  conditional E-value: 7.6e-06
   TIGR03314 21 vdiaidgdvivevGsteelkakypeaefkdakGklvmPGlvnthnhl 67
                 ++a+ g++i  vGs +el a+    +  d     +mPGl+ +h h+
  MMETSP1137-20121227|9637_1  9 MCVAVLGELIAFVGSLAELPAELARLNRVDYGDATIMPGLIDAHVHI 55
                59********************************************8 PP

  == domain 2    score: 0.8 bits;  conditional E-value: 0.081
   TIGR03314 355 erffkaklGvleagakadliivdyn 379
                 +  ++a  G+l +g++adl++v  n
  MMETSP1137-20121227|9637_1 331 ACALEATTGMLTDGYAADLLVVPGN 355
                 5567889999999999999998655 PP

>> TIGR00221  nagA: N-acetylglucosamine-6-phosphate deacetylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.0      0.01       4.6      24      64 ..      11      54 ..       8      73 .. 0.82
   2 ?   -2.8   0.0       1.1   5.1e+02     224     244 ..     179     199 ..     147     225 .. 0.51
   3 !    7.1   0.0    0.0011       0.5     327     366 ..     313     352 ..     299     356 .. 0.89

  Alignments for each domain:
  == domain 1    score: 3.9 bits;  conditional E-value: 0.01
   TIGR00221 24 vvindekikavvteaele...eeikeidlkgnvltpGliDvqln 64
                v + +e+i  v + ael+      +++d   ++++pGliD +++
  MMETSP1137-20121227|9637_1 11 VAVLGELIAFVGSLAELPaelARLNRVDYGDATIMPGLIDAHVH 54
                6777888999999999984444456677778***********98 PP

  == domain 2    score: -2.8 bits;  conditional E-value: 1.1
   TIGR00221 224 skldhRepgviGavLdeddvv 244
                 s ++ +e+ ++ a  + +++ 
  MMETSP1137-20121227|9637_1 179 SAFTSKEMRIAVACAAAAGLR 199
                 333333333333333333333 PP

  == domain 3    score: 7.1 bits;  conditional E-value: 0.0011
   TIGR00221 327 veislsdvvrisslnparalgiddrlGsvakGkdanLavl 366
                 +e+s ++++r ++  +a a  ++   G+++ G+ a+L v+
  MMETSP1137-20121227|9637_1 313 AEMSAAQLLRCATSEAAAACALEATTGMLTDGYAADLLVV 352
                 6789999******************************998 PP

>> TIGR02033  D-hydantoinase: dihydropyrimidinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.6   0.0   2.3e-05     0.011      19      63 ..      11      58 ..       5     111 .. 0.65

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 2.3e-05
   TIGR02033 19 vliedekivavganllapda...vkeidatGkyvlPGgiDvHtHlele 63
                v++ +e i+ vg+ +  p++    +++d     ++PG iD+H H+e  
  MMETSP1137-20121227|9637_1 11 VAVLGELIAFVGSLAELPAElarLNRVDYGDATIMPGLIDAHVHIEFD 58
                56778888888888655543111568999999*************853 PP

>> TIGR01975  isoAsp_dipep: beta-aspartyl peptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   0.0    0.0004      0.18      24      65 ..      15      55 ..       6      98 .. 0.82
   2 ?    0.1   0.0      0.17        76     323     360 ..     314     352 ..     302     360 .. 0.87

  Alignments for each domain:
  == domain 1    score: 8.7 bits;  conditional E-value: 0.0004
   TIGR01975 24 sdkiiaiadeieltkdivevevveeleglivvPGfidqhvhi 65
                ++ i  + +  el+ ++   + v+   +  ++PG+id+hvhi
  MMETSP1137-20121227|9637_1 15 GELIAFVGSLAELPAELARLNRVDY-GDATIMPGLIDAHVHI 55
                5555555666666777777777776.88999**********9 PP

  == domain 2    score: 0.1 bits;  conditional E-value: 0.17
   TIGR01975 323 dlplekalrvitsnvakvlkls.kkGeisegkdadlvll 360
                 +++  + lr  ts+ a    l+   G++++g  adl+++
  MMETSP1137-20121227|9637_1 314 EMSAAQLLRCATSEAAAACALEaTTGMLTDGYAADLLVV 352
                 566778899************9789***********997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (400 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       152  (0.0370551); expected 82.0 (0.02)
Passed bias filter:                      100  (0.0243784); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                         9  (0.00219405); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.38u 0.17s 00:00:00.55 Elapsed: 00:00:00.56
# Mc/sec: 942.78
//
Query:       MMETSP1137-20121227|9638_1  [L=751]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (751 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        56  (0.0136519); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.17s 00:00:00.63 Elapsed: 00:00:00.62
# Mc/sec: 1598.77
//
Query:       MMETSP1137-20121227|9639_1  [L=336]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (336 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       124  (0.0302292); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.15s 00:00:00.40 Elapsed: 00:00:00.37
# Mc/sec: 1198.60
//
Query:       MMETSP1137-20121227|9640_1  [L=844]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (844 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       112  (0.0273038); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.51u 0.16s 00:00:00.67 Elapsed: 00:00:00.48
# Mc/sec: 2320.81
//
Query:       MMETSP1137-20121227|9641_1  [L=450]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (450 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        93  (0.0226719); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.16s 00:00:00.47 Elapsed: 00:00:00.50
# Mc/sec: 1187.90
//
Query:       MMETSP1137-20121227|9642_1  [L=170]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (170 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.15s 00:00:00.32 Elapsed: 00:00:00.43
# Mc/sec: 521.82
//
Query:       MMETSP1137-20121227|9643_1  [L=532]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   1.9e-242  803.3   6.7   2.2e-242  803.1   4.7    1.0  1  TIGR02347 chap_CCT_zeta: T-complex protein 1, zeta subunit
   1.1e-129  431.4   8.3   1.3e-129  431.1   5.8    1.0  1  TIGR02339 thermosome_arch: thermosome, various subunits, archaeal
    3.4e-95  317.3   5.9    4.5e-95  316.9   4.1    1.0  1  TIGR02344 chap_CCT_gamma: T-complex protein 1, gamma subunit
    5.4e-92  306.6   3.2    6.9e-92  306.2   2.2    1.0  1  TIGR02345 chap_CCT_eta: T-complex protein 1, eta subunit
    5.1e-90  300.5   5.7    6.1e-90  300.2   4.0    1.0  1  TIGR02340 chap_CCT_alpha: T-complex protein 1, alpha subunit
      4e-81  270.9   4.4    4.9e-81  270.6   3.0    1.0  1  TIGR02342 chap_CCT_delta: T-complex protein 1, delta subunit
    1.3e-78  262.7   6.0    1.6e-78  262.4   4.2    1.0  1  TIGR02343 chap_CCT_epsi: T-complex protein 1, epsilon subunit
    7.2e-72  240.3   2.4    9.5e-72  239.9   1.7    1.0  1  TIGR02346 chap_CCT_theta: T-complex protein 1, theta subunit
    1.5e-70  236.1   6.5    1.7e-70  235.9   4.5    1.0  1  TIGR02341 chap_CCT_beta: T-complex protein 1, beta subunit
    1.1e-26   91.3   7.4    2.4e-14   50.5   1.5    2.2  2  TIGR02348 GroEL: chaperonin GroL


Domain annotation for each model (and alignments):
>> TIGR02347  chap_CCT_zeta: T-complex protein 1, zeta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  803.1   4.7  5.4e-245  2.2e-242       2     531 .]       5     531 ..       4     531 .. 0.99

  Alignments for each domain:
  == domain 1    score: 803.1 bits;  conditional E-value: 5.4e-245
   TIGR02347   2 vkllnkkaevlrkdaalkvnlnaakglqdvlktnlGPkGtlkmlvsgaGdikltkdGnvllkelqiqhPtasliaraaaaqdditGdGttstviligellkqaerlieeglhPrilteGleiakkealefleklkikkeeevdrelllevartslrtkleaeladklteivvdavlaikkdeeeidlfmveilemkhklevdtklirGlvldhGarhPdmkrkvknvyiltlnvsleyektevnsgfvyssaeereklveaerkfvddrvkkiielkkkvvekkadkgfvvinqkGidplsldllakegilalrrakrrnlerltlacGGealnsvedltpeslGyaGlvyetvigeekytfieevknPksvtilikgpndhtlkqikdavrdGlravknaiedkcvvaGagafeiallkklkeekksvkGkaklgveafaeallviPkvlvensGydvqevlvkledeadearevvgvdletgesivaelkgiwdnysvkkqllssatviasqlllvdevlraGksklk 531
                  +++n++a+vl++ +a  +n+naa+glqdvlk+nlGPkGtlkmlv+g+GdikltkdGn+ll+e+qiq+Pta +iar+a+aqdditGdGtts+v+++gel+kqaer +++g+hPr++ +G+e+ak+++l +++++k+  ++++dr ll+++a++slrtk++aelad +t+ivvdav++ik++++e+dl+mvei++m+hk  +d +l++GlvldhG rhP+m++k++++ iltln  ley+++ev sgf ys+ae+rek+veaerk+vdd+ k +++lk+k +++   + +vvinqkGidpl+ld+lakegilalrrakrrn+er+ lacGGe++ns+ed+tp++lGya  vye+++gee ytf+e v+nP s+til+kg++ h ++qikdavrdGlrav+na+ d+ +v+Gag +e+++ +kl e+++sv G+aklgv+afa+allviPk+l+en+Gyd q+ l+kl++ + ++  ++g d++tg++++++++giwdn++vk+q+l+sa+vi++qlllvdev+raGk+++k
  MMETSP1137-20121227|9643_1   5 AQVVNPNADVLKSGQAQLMNINAARGLQDVLKSNLGPKGTLKMLVGGSGDIKLTKDGNTLLHEMQIQNPTACMIARIATAQDDITGDGTTSAVLIVGELMKQAERHLSDGVHPRLICDGIELAKTAVLAYIDEIKT-SKDTTDRALLMQIAQASLRTKMHAELADLFTDIVVDAVRVIKREGQELDLHMVEIMHMQHKAGTDSRLVKGLVLDHGGRHPGMPKKLSKCKILTLNYDLEYQRSEVASGFYYSNAEQREKMVEAERKWVDDKTKLVLDLKRKACTNG--ETLVVINQKGIDPLALDMLAKEGILALRRAKRRNMERICLACGGEQVNSIEDMTPDVLGYAEEVYEQTLGEETYTFVEGVSNPFSCTILVKGAHPHVIAQIKDAVRDGLRAVANAMTDGFLVPGAGGIEVMCHAKLIEYRNSVVGRAKLGVQAFADALLVIPKTLAENAGYDGQDSLMKLQESHMAGSAKIGFDINTGDPMDPAEAGIWDNFRVKRQMLDSAAVISAQLLLVDEVIRAGKQMKK 531
                 5899**********************************************************************************************************************************99.6679**********************************************************************************************************************************************9..68***********************************************************************************************************************************************************************************************************************************************987 PP

>> TIGR02339  thermosome_arch: thermosome, various subunits, archaeal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  431.1   5.8  3.3e-132  1.3e-129       7     520 ..      10     525 ..       5     526 .. 0.95

  Alignments for each domain:
  == domain 1    score: 431.1 bits;  conditional E-value: 3.3e-132
   TIGR02339   7 egtqrtkgrdalksniaaakavaeavkstlGPrGlDkmLvdslGdvtitnDGatilkemdiehPaakllvevaktqdeevgDGtttavvlaGeLlekaedLleqdihPtviveGyrkaaekalevideiaekidvedkellkkvaetsltskavaeeakdklaelvveavkqvvekredgkykvdldnikiekkkGgsiedtelveGivvDkevvhegmPkrvenakialldaplevekteidaklkitspdqlkkfldqeeallkemvdkiada....Gan....vvicqkgiDdlaqhylakkGilavrrvkksDieklaratGakivsslkeieesdLGeaelveerkvgedklvfvegaknakavtillrGgtehvvdeleRaleDalkvvksvledgkvvaGgGavevelakrlreyaakieGreqlaveafadaleeiprilaenaGldpidalvelRakhekegnknagvdvftgeiedmlelgvieplkvkeqaiksateaatlilriDdviaa 520
                 ++++  k  +a+ +ni+aa+ +++++ks lGP+G  kmLv ++Gd+ +t DG t+l+em+i++P+a ++  +a +qd+ +gDGtt+av++ GeL+++ae  l +++hP +i +G ++a++  l  idei ++ d++d+ ll ++a++sl +k+ a e +d+ +++vv+av +v++++  g  ++dl+ ++i + + ++ +d++lv+G+v+D    h+gmPk++++ ki+ l+  le +++e+   +  ++ +q +k++++e + + ++ + + d      +n    vvi qkgiD la   lak+Gila+rr+k+ ++e++  a+G++ v+s+++++++ LG+ae v e+++ge++++fveg++n+ + til++G   hv+ ++  a++D l++v+++++dg +v+G+G +ev    +l ey +++ Gr +l v+afadal  ip++laenaG+d  d+l++l + h   g +++g d+ tg+  d +e+g+++  +vk+q ++sa+  ++ +l +D+vi+a
  MMETSP1137-20121227|9643_1  10 PNADVLKSGQAQLMNINAARGLQDVLKSNLGPKGTLKMLVGGSGDIKLTKDGNTLLHEMQIQNPTACMIARIATAQDDITGDGTTSAVLIVGELMKQAERHLSDGVHPRLICDGIELAKTAVLAYIDEIKTSKDTTDRALLMQIAQASLRTKMHA-ELADLFTDIVVDAV-RVIKRE--G-QELDLHMVEIMHMQHKAGTDSRLVKGLVLDHGGRHPGMPKKLSKCKILTLNYDLEYQRSEVASGFYYSNAEQREKMVEAERKWVDDKTKLVLDLkrkaCTNgetlVVINQKGIDPLALDMLAKEGILALRRAKRRNMERICLACGGEQVNSIEDMTPDVLGYAEEVYEQTLGEETYTFVEGVSNPFSCTILVKGAHPHVIAQIKDAVRDGLRAVANAMTDGFLVPGAGGIEVMCHAKLIEYRNSVVGRAKLGVQAFADALLVIPKTLAENAGYDGQDSLMKLQESHMA-GSAKIGFDINTGDPMDPAEAGIWDNFRVKRQMLDSAAVISAQLLLVDEVIRA 525
                 5666667789************************************************************************************************************************************************6.889***********.666665..2.479************************************************************************99999999988877654431111222333589************************************************************************************************************************************************************************************6.9*************************************************98 PP

>> TIGR02344  chap_CCT_gamma: T-complex protein 1, gamma subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  316.9   4.1   1.1e-97   4.5e-95       4     522 ..       7     525 ..       5     530 .. 0.93

  Alignments for each domain:
  == domain 1    score: 316.9 bits;  conditional E-value: 1.1e-97
   TIGR02344   4 vlnqntkresGrkaqlsniqaakavadiirttlGpkamlkmlldplGgivltndGnailreidvahpaakslielsrtqdeevGdGttsviilaGellaaaepfleknihptvivraykkaledalkvleelsipvdvedeakllklvkssigtkfvsrwsdlvvdlaldavktvkleerngrklevdikryakvekipGGeiedsavlkGvllnkdvthpkmrrkienprivlldcpleykkgesqtnveilkeedwnrllqleeeevkklceeiiavkpd........lvitekGvsdlaqhyllkanisairrvrktdnnriarvsGativnrveelkesdvGtgaGlfevkkiGdeyftflteckdpkactillrGaskdvlnevernlqdalavarnvllepklvpGGGatelavsvklkkkakklegveqlpyeavadaleviprtlvqncGvnvirtltelrakhaqeekkalGidGetGkivdmkekgiweplavklqtiktaiesavlllriddivsG 522
                 v+n n++  +  +aql ni+aa+ + d++++ lGpk  lkml+   G i lt dGn++l e++++ p+a  +  ++ +qd+  GdGtts +++ Gel+++ae  l+  +hp +i+ + + a + +l  ++e+  + d  d+a l+++ ++s+ tk+ ++ +dl +d+ +dav+++k+e    ++l++ +   ++++   G   +ds+++kG++l+    hp m +k+   +i+ l+  ley+++e  +    ++ e+ +++++ e++ v+   + ++++k +        +vi +kG+  la   l+k++i a+rr ++ + +ri  ++G + vn +e+++ + +G    ++e + +G+e +tf++   +p +ctil++Ga   v+ +++  ++d+l+ + n + ++ lvpG G +e+   +kl +  +++ g ++l ++a adal vip+tl++n+G +   +l +l+  h ++ ++++G d +tG+ +d  e+giw+++ vk q++ +a   ++ ll +d+++  
  MMETSP1137-20121227|9643_1   7 VVNPNADVLKSGQAQLMNINAARGLQDVLKSNLGPKGTLKMLVGGSGDIKLTKDGNTLLHEMQIQNPTACMIARIATAQDDITGDGTTSAVLIVGELMKQAERHLSDGVHPRLICDGIELAKTAVLAYIDEIKTSKDTTDRALLMQIAQASLRTKMHAELADLFTDIVVDAVRVIKREG---QELDLHMVEIMHMQHKAG---TDSRLVKGLVLDHGGRHPGMPKKLSKCKILTLNYDLEYQRSEVASGFYYSNAEQREKMVEAERKWVDDKTKLVLDLKRKactngetlVVINQKGIDPLALDMLAKEGILALRRAKRRNMERICLACGGEQVNSIEDMTPDVLGYAEEVYE-QTLGEETYTFVEGVSNPFSCTILVKGAHPHVIAQIKDAVRDGLRAVANAMTDGFLVPGAGGIEVMCHAKLIEYRNSVVGRAKLGVQAFADALLVIPKTLAENAGYDGQDSLMKLQESHMAG-SAKIGFDINTGDPMDPAEAGIWDNFRVKRQMLDSAAVISAQLLLVDEVIRA 525
                 5666777777789******************************************************************************************************************************************************************9988...445555555555555444...79*****************************************************************9999999887432334445489*************************************************999999888888.78*********************************************************************************************************************99.699*****************************9875555555668988754 PP

>> TIGR02345  chap_CCT_eta: T-complex protein 1, eta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  306.2   2.2   1.7e-94   6.9e-92      14     521 ..      16     526 ..       7     528 .. 0.93

  Alignments for each domain:
  == domain 1    score: 306.2 bits;  conditional E-value: 1.7e-94
   TIGR02345  14 sqGkgqlisninacvaiaeilkttlGPrGmdklivskek.avvsndGatilklldivhPaakllvdiaksqdsevGdGttsvvvlagellkeakplieeglhpqliiralrealklaieklkeiaveldeeksekrevleklaatalsskliaeekeffskmvvdavlsldkddldkk..liGvkkvkGGaledsvlvkGvafkktfsyaGfeqqPkkfanPkilllnvelelkaek.......dnaeirvedvedykeivdaewkiileklekivesG.anvvlsklsiGdlatqyfadrdifcaGrvsdedlkrvvkatGasilsavsdleadvlGkcalfeekqiGserynlftggekakactlilrGgaeqfleeaerslhdaimivrralkakkivaGGGaielelskllrekskkidgkqqliieavakaleviPrslaenaGfdsieilnklrkkhakkgekwaGvdieteeildaleafvwePllvkknalkaateaaatilsvdetikak 521
                 + G++ql+ nina++ ++++lk+ lGP+G  k++v+ +    ++ dG t+l++++i  P+a ++  ia +qd+  GdGtts v++ gel+k+a   + +g+hp+li+ +++ a++++++ ++ei+ + d   +  r +l ++a+++l++k+ ae ++ f+ +vvdav+ ++++ ++ +  ++ + +++  a +ds lvkG+ +++   + G    Pkk++  kil+ln +le++  +        nae r + ve  ++ vd   k++l+  +k  + G + vv+ ++ i  la   +a+  i++  r +  +++r+  a+G+  + +++d++ dvlG  +   e+ +G+e y + +g+ +  +ct++++G+  +++++++ +++d +  v  a+ +  +v+G G ie+   + l e+ + + g+++l ++a+a+al viP++laenaG+d  + l kl++ h   g++  G di+t + +d  ea +w+   vk+ +l++a+  +a +l vde i+a 
  MMETSP1137-20121227|9643_1  16 KSGQAQLM-NINAARGLQDVLKSNLGPKGTLKMLVGGSGdIKLTKDGNTLLHEMQIQNPTACMIARIATAQDDITGDGTTSAVLIVGELMKQAERHLSDGVHPRLICDGIELAKTAVLAYIDEIKTSKD---TTDRALLMQIAQASLRTKMHAELADLFTDIVVDAVRVIKREGQELDlhMVEIMHMQHKAGTDSRLVKGLVLDHGGRHPG---MPKKLSKCKILTLNYDLEYQRSEvasgfyySNAEQREKMVEAERKWVDDKTKLVLDLKRKACTNGeTLVVINQKGIDPLALDMLAKEGILALRRAKRRNMERICLACGGEQVNSIEDMTPDVLGYAEEVYEQTLGEETYTFVEGVSNPFSCTILVKGAHPHVIAQIKDAVRDGLRAVANAMTDGFLVPGAGGIEVMCHAKLIEYRNSVVGRAKLGVQAFADALLVIPKTLAENAGYDGQDSLMKLQESHMA-GSAKIGFDINTGDPMDPAEAGIWDNFRVKRQMLDSAAVISAQLLLVDEVIRAG 526
                 46888875.9********************999998877588*********************************************************************************998766...6779*********************************99986554433999********************99877766...7******************865423333336888888888888888888888888866665555515688999*********************************************************************************************************************************************************************************9.99***********************************************9875 PP

>> TIGR02340  chap_CCT_alpha: T-complex protein 1, alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  300.2   4.0   1.5e-92   6.1e-90      14     534 ..      21     530 ..      12     532 .] 0.94

  Alignments for each domain:
  == domain 1    score: 300.2 bits;  conditional E-value: 1.5e-92
   TIGR02340  14 rkqnvlavvavanivktslGPvGldkmlvddvGdvtitndGatilkklevehPaakvlvelaqlqdkevGdGttsvvilaaellkradelvkrkvhPtsvisGyrlalkeavkyikeklavsveelgkealinvaktslsskiislesdlfsnlvvdavlavkvtnekgetkyPikavnilkahGksaresllvkGyalnctvasqqmpkrvkkakialldfnlqkaklklgvqivvedpeklekirkreadivkerikkilk....aGan....vvlttkGiddlalkylveagvmavrrvkkedlkriakatGatlvssladleGeetleasllGeaeevveeriaddelilikgtkkkksasiilrGandvlldemerslhdalcvvkrtleskkvvaGgGaveaalsiyleelattlgsreqlaiaefaealliiPkvlavnaakdstelvaklralhaaaqlkeekkklkflGldlsngkirdnveaGvlePavskvkslkfateaaitilriddliklkpeee 534
                 +  n+ a+  +++++k+ lGP G  kmlv   Gd+ +t dG t+l+++++++P+a ++  +a+ qd   GdGtts v++  el+k+a+  +++ vhP  + +G  la    + yi+e +++s ++  ++ l+ +a++sl +k+ +  +dlf+++vvdav  +k + +    +  ++ v+i+  + k+ ++s lvkG +l+       mpk+++k ki+ l+++l+ ++ +++     +++e+ ek+ + e + v ++ k +l+    a +n    vv+  kGid lal +l   g++a+rr k++++ ri  a G++ v s+ d+       + +lG aeev+e+ ++++   +++g ++  s++i+++Ga  +++ +++ ++ d l +v  ++  + +v+G+G +e+    +l e+ +++  r +l +++fa+all+iPk+la na+ d ++ + kl+ +h a            +G+d+++g  +d  eaG+ +    k ++l +a   +  +l +d++i+  ++ +
  MMETSP1137-20121227|9643_1  21 QLMNINAARGLQDVLKSNLGPKGTLKMLVGGSGDIKLTKDGNTLLHEMQIQNPTACMIARIATAQDDITGDGTTSAVLIVGELMKQAERHLSDGVHPRLICDGIELAKTAVLAYIDE-IKTSKDTTDRALLMQIAQASLRTKMHAELADLFTDIVVDAVRVIKREGQ----ELDLHMVEIMHMQHKAGTDSRLVKGLVLDHGGRHPGMPKKLSKCKILTLNYDLEYQRSEVASGFYYSNAEQREKMVEAERKWVDDKTKLVLDlkrkACTNgetlVVINQKGIDPLALDMLAKEGILALRRAKRRNMERICLACGGEQVNSIEDM------TPDVLGYAEEVYEQTLGEETYTFVEGVSNPFSCTILVKGAHPHVIAQIKDAVRDGLRAVANAMTDGFLVPGAGGIEVMCHAKLIEYRNSVVGRAKLGVQAFADALLVIPKTLAENAGYDGQDSLMKLQESHMAGS--------AKIGFDINTGDPMDPAEAGIWDNFRVKRQMLDSAAVISAQLLLVDEVIRAGKQMK 530
                 5679***************************************************************************************************************75.899*****************************************98875....456889*****************************************************************************999999986333333333345999*******************************************9887......5678***************************************************************************************************************************99887654........458*********************************************9888766 PP

>> TIGR02342  chap_CCT_delta: T-complex protein 1, delta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  270.6   3.0   1.2e-83   4.9e-81       9     515 ..      19     524 ..      12     526 .. 0.95

  Alignments for each domain:
  == domain 1    score: 270.6 bits;  conditional E-value: 1.2e-83
   TIGR02342   9 dvrtsnivaakavadairtslGpkGmdkliqekkGeviitndGatilkqlevlhpaakllvelskaqdieaGdGttsvvvlaGalldaaekllekgihptiisesfqsaadealkilkelsipvdlsdrealiksattslsskvvsqyssllaplavdavlkvidsekdknvdlkdikvvkklGgtiddtelieGvvltqkasksaggptriekakigliqfqlsapktdmenqvvvsdyaqmdrvlkeerkyi...lnlvkkikkaganvlliqksilrdavndlalhflakkkilvvkdiereevefisktlGckpvasidkltadklGkaelveevksddskivkitGvknagktvsvlvrGsnklvideaerslhdalcvirslvkkraliaGGGapeieialklskkarelkGvesyivrafadalevipytlaenaGlnpikvvtelrnrhaqGektaGisvrkggitdileeevlqpllvtksavtlasetvrsilkiddivl 515
                 + +  ni aa+ + d++++ lGpkG  k++  + G++ +t dG+t+l+++++  p+a ++  ++ aqd  +GdGtts v++ G l++ ae+ l+ g+hp +i+++++ a    l  ++e++++ d +dr+ l++ a++sl +k+ ++ ++l++ + vdav  ++   + ++ dl+++ +++    +  d+ l++G+vl++   +  g p+++ k ki  +++ l   ++++ +    s+ +q ++++  erk++    +lv  +k+  +        i +  ++ lal +lak +il ++  +r ++e i+ + G + v si+ +t+d lG+ae v e ++++     + Gv+n+  + ++lv+G+   vi + + ++ d l  +   + +  l++G G  e+    kl ++ +++ G  ++ v+afadal vip tlaenaG +  + + +l++ h  G  + G +++ g   d  e  +   + v++  +  a+     +l +d+++ 
  MMETSP1137-20121227|9643_1  19 QAQLMNINAARGLQDVLKSNLGPKGTLKMLVGGSGDIKLTKDGNTLLHEMQIQNPTACMIARIATAQDDITGDGTTSAVLIVGELMKQAERHLSDGVHPRLICDGIELAKTAVLAYIDEIKTSKDTTDRALLMQIAQASLRTKMHAELADLFTDIVVDAVRVIKR--EGQELDLHMVEIMHMQHKAGTDSRLVKGLVLDHGGRH-PGMPKKLSKCKILTLNYDLEYQRSEVASGFYYSNAEQREKMVEAERKWVddkTKLVLDLKRKACTNGETLVVINQKGIDPLALDMLAKEGILALRRAKRRNMERICLACGGEQVNSIEDMTPDVLGYAEEVYEQTLGEETYTFVEGVSNPF-SCTILVKGAHPHVIAQIKDAVRDGLRAVANAMTDGFLVPGAGGIEVMCHAKLIEYRNSVVGRAKLGVQAFADALLVIPKTLAENAGYDGQDSLMKLQESHMAGSAKIGFDINTGDPMDPAEAGIWDNFRVKRQMLDSAAVISAQLLLVDEVIR 524
                 56678**********************************************************************************************************************************************************977665..68999*******999999999**********998875.9***********************************************9333457777777777655555567788899********************************************************************9986.579**************************************************************************************************************************************************9985 PP

>> TIGR02343  chap_CCT_epsi: T-complex protein 1, epsilon subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  262.4   4.2     4e-81   1.6e-78      23     530 ..      15     524 ..       5     526 .. 0.94

  Alignments for each domain:
  == domain 1    score: 262.4 bits;  conditional E-value: 4e-81
   TIGR02343  23 lkGleakksniaaakavasilrtslGpkGldkiliskdgditvtndGatilekmdldeeiakllvelsksqdeeiGdGttgvvvlasalleqaeklldkGihpikiaeGfekaakvavekleeiaeeisvdednketllkaaktslgskivskskrrlaeiavdavlavadlerkdvdfdlikvegkvGgsledtklikGilidkdlshpqmkkevkdakiailtcpfeppkpktkhkldissveeykklekyekekfee...middikksGan.....lvicqwGfddeanhlllqndlpavrwvgGkeleliaiatgGrivprfeelseeklGkaklvreksfGttkdrllvieqskeskavtilvrGgnkliieeakrslhdalcvvrnlikdsrivyGGGaaeiacslaveeeadklsgveqyairafaealeeiplalaensGldpietlsevkakqlkeknpalGvdcleeGtndmkelkvletligkkqqillatqlvkmilkiddvis 530
                 lk  +a+  ni aa+ +  +l++ lGpkG  k+l++  gdi +t dG t+l++m+++++ a ++ +++ +qd+  GdGtt+ v++ + l++qae+ l  G+hp  i++G e a    ++ ++ei    s d+ ++  l++ a++sl +k+  +  + +++i+vdav  v+  e +++d++++++     +   d++l+kG+++d    hp m+k++ ++ki  l   +e  +      +  s++e+ +k+ + e++  ++   ++ d+k+  ++     +vi q G d  a ++l ++++ a+r    +++e i +a gG  v   e+++ + lG a+ v+e+ +G   +   ++e  ++  + tilv+G+   +i + k +++d l +v n ++d  +v G G  e+ c   + e  + + g  +  ++afa+al  ip +laen+G+d  + l ++++  +    +++G d ++    d  e  + + +  k+q +  a+ +   +l +d+vi 
  MMETSP1137-20121227|9643_1  15 LKSGQAQLMNINAARGLQDVLKSNLGPKGTLKMLVGGSGDIKLTKDGNTLLHEMQIQNPTACMIARIATAQDDITGDGTTSAVLIVGELMKQAERHLSDGVHPRLICDGIELAKTAVLAYIDEIKT--SKDTTDRALLMQIAQASLRTKMHAELADLFTDIVVDAV-RVIKREGQELDLHMVEIMHMQHKAGTDSRLVKGLVLDHGGRHPGMPKKLSKCKILTLNYDLEYQRSEVASGFYYSNAEQREKMVEAERKWVDDktkLVLDLKRKACTngetlVVINQKGIDPLALDMLAKEGILALRRAKRRNMERICLACGGEQVNSIEDMTPDVLGYAEEVYEQTLGE--ETYTFVEGVSNPFSCTILVKGAHPHVIAQIKDAVRDGLRAVANAMTDGFLVPGAGGIEVMCHAKLIEYRNSVVGRAKLGVQAFADALLVIPKTLAENAGYDGQDSLMKLQESHMAG-SAKIGFDINTGDPMDPAEAGIWDNFRVKRQMLDSAAVISAQLLLVDEVIR 524
                 677799*************************************************************************************************************99******965..56668999*****************************8.688999*****999988887777889*************************************************************99876522267677764322133347899***************************************************************6..567889*******************************************************************************************************9998876.579*********************************************96 PP

>> TIGR02346  chap_CCT_theta: T-complex protein 1, theta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  239.9   1.7   2.3e-74   9.5e-72      18     519 ..      19     525 ..       5     529 .. 0.93

  Alignments for each domain:
  == domain 1    score: 239.9 bits;  conditional E-value: 2.3e-74
   TIGR02346  18 eavlknieaikelseitrtslGPngmnklvinhleklfvtnDaatilrelevqhPaakllvlaskaqeeelGDgtnlvlvlagelLekaeelirlGlspseiikGyelalkkalevLeelvvlevkdleekeelikalkaslsskqlgn.edilaelvakaiitvlPknsekfnvdnirvvkllGgslsdsevlkGlvlkreae..gsvkrvkdakvavfscpldtattetkGtvLlknaeelldyskgeekkiealikeiad........sgvkvivaggsvsdlalhyvekykilvlkisskfelrrlckvvgatalvrlsapspeelGlvdsvkveeigskkvtvikqeeedskistivLrGstknllddieraidDGvnvvkalvkdsrllpGagateieLakklkkyaeklkgleqyaikkfaeafeiiPrtlaenaGlnanevlskLyaahkkgnkslgidiekesdavkdvkeekiyDllaakkfaiklateaavtvLkvDqiima 519
                 +a l ni+a + l+++++  lGP+g  k+++     + +t+D  t+l+e+++q P+a ++  ++ aq+  +GDgt  ++ + gel+++ae+ ++ G++p  i +G ela  ++l+ ++e+ +   kd++++  l+++ +asl +k  ++ +d+++++v +a+  +  ++ ++ ++  + ++ +   + +ds ++kGlvl++     g  k+ ++ k+  ++  l+ + +e        nae+      +e k ++++ k + d            v++ +  +  lal  + k +il l+   + ++ r+c ++g  ++  ++  +p+ lG+ ++v+ + +g+++ t ++   +     ti+++G+   ++ +i  a+ DG+ +v +++ d+ l+pGag  e+    kl +y +++ g  ++ ++ fa a  +iP+tlaenaG++ ++ l kL  +h  g  ++g di++++    d +e+ i+D++  k+  +  a+     +L vD +i a
  MMETSP1137-20121227|9643_1  19 QAQLMNINAARGLQDVLKSNLGPKGTLKMLVGGSGDIKLTKDGNTLLHEMQIQNPTACMIARIATAQDDITGDGTTSAVLIVGELMKQAERHLSDGVHPRLICDGIELAKTAVLAYIDEIKT--SKDTTDRALLMQIAQASLRTKMHAElADLFTDIVVDAVRVIK-REGQELDLHMVEIMHMQHKAGTDSRLVKGLVLDHGGRhpGMPKKLSKCKILTLNYDLEYQRSEVASGFYYSNAEQREKMVEAERKWVDDKTKLVLDlkrkactnGETLVVINQKGIDPLALDMLAKEGILALRRAKRRNMERICLACGGEQVNSIEDMTPDVLGYAEEVYEQTLGEETYTFVEGVSN-PFSCTILVKGAHPHVIAQIKDAVRDGLRAVANAMTDGFLVPGAGGIEVMCHAKLIEYRNSVVGRAKLGVQAFADALLVIPKTLAENAGYDGQDSLMKLQESHMAGSAKIGFDINTGDP--MDPAEAGIWDNFRVKRQMLDSAAVISAQLLLVDEVIRA 525
                 45578******************************************************************************************************************976..579999***************999989**********97666.55899***************************98653338999********************************************9988877652222111033457888899*******************************************************************99988.5668*****************************************************************************************************************9..7**********************************976 PP

>> TIGR02341  chap_CCT_beta: T-complex protein 1, beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  235.9   4.5   4.3e-73   1.7e-70       2     515 ..       7     526 ..       6     530 .. 0.88

  Alignments for each domain:
  == domain 1    score: 235.9 bits;  conditional E-value: 4.3e-73
   TIGR02341   2 ilkdsaeeeraenarlssfvgaiavgdlvkstlgpkgmdkillsasseasivvtndgatilksialdnpaakvlvdiskvqddevgdgttsvtvlaaellreaeklvnkkihpqtiiegyrlatkaalealkksavdnssdkvkfredllkiarttlsskilsqdkdhfaklavdavlrlkgst...nleaiqiikklggklddsyldegfllekkig.vnqpkrienakiliantaldtdkvkvfgsrvrvdstaklaelekaekekmkekvekil...khni.n....vfinrqliynypeqlfadagvmaiehadfegverlalvtggeivstfdepelvklgscdlieeiligedkllkfsgvklgeactivlrgatqqildeaerslhdalavlsqtvkesrtvlgggcaellmakaveeeaqkvagkkalaveafakalrqlptiladnagfdsaelvaklraahaegnstagldleegeiadlrklgivesyklkravvssaaeaaevllrvdniikaa 515
                 +++ +a+  ++ +a+l  +  a  + d++ks lgpkg  k+l+ +s   +i++t dg t+l+++ ++np+a ++  i+  qdd  gdgtts +++  el+++ae+ +++ +hp+ i +g  la +a l  +    ++ s+d +  r  l++ia+++l +k+ ++  d f+++ vdav  +k  +   +l+ ++i+++     +ds l +g++l++       pk++ + kil  n  l+ ++  v        ++ +  ++ +ae++ + +k + +l   + ++ n    v in++ i     +++a+ g+ a+  a    +er++l  gge v ++++     lg  + + e  +ge+      gv    +cti+++ga   ++ + + ++ d l  +++ + +   v g+g  e++    + e  + v g+  l v+afa al  +p  la+nag+d  + + kl+ +h+ g  ++g+d++ g+  d ++ gi + +++kr+++ saa  + +ll vd++i+a 
  MMETSP1137-20121227|9643_1   7 VVNPNADVLKSGQAQLMNINAARGLQDVLKSNLGPKGTLKMLVGGSG--DIKLTKDGNTLLHEMQIQNPTACMIARIATAQDDITGDGTTSAVLIVGELMKQAERHLSDGVHPRLICDGIELAKTAVLAYID--EIKTSKD-TTDRALLMQIAQASLRTKMHAELADLFTDIVVDAVRVIKREGqelDLHMVEIMHMQHKAGTDSRLVKGLVLDHGGRhPGMPKKLSKCKILTLNYDLEYQRSEVASGFY-YSNAEQREKMVEAERKWVDDKTKLVLdlkRKACtNgetlVVINQKGIDPLALDMLAKEGILALRRAKRRNMERICLACGGEQVNSIEDMTPDVLGYAEEVYEQTLGEETYTFVEGVSNPFSCTILVKGAHPHVIAQIKDAVRDGLRAVANAMTDGFLVPGAGGIEVMCHAKLIEYRNSVVGRAKLGVQAFADALLVIPKTLAENAGYDGQDSLMKLQESHMAGSAKIGFDINTGDPMDPAEAGIWDNFRVKRQMLDSAAVISAQLLLVDEVIRAG 526
                 667777778888999999999*********************99887..9**********************************************************************999877766554..5788888.6779******************************999987762224667778877778889**********975331357********************99976544.334444444555555555444333321102222122233789*******************************************99999999************************************************************************9887778888999***********************************************************************************************96 PP

>> TIGR02348  GroEL: chaperonin GroL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.5   1.5   5.9e-17   2.4e-14      21     185 ..      31     192 ..      17     218 .. 0.80
   2 !   43.6   0.2   7.5e-15   3.1e-12     387     520 ..     385     523 ..     372     530 .. 0.81

  Alignments for each domain:
  == domain 1    score: 50.5 bits;  conditional E-value: 5.9e-17
   TIGR02348  21 ladavkvtlGPkgrnvvleksfGaPkitkdGvtvakeieledkfenlGaklvkevasktndvaGdGtttatvlaqaivkeGlknvaaGanpielkrGiekavekvveelk..klskevkdkeeiaqvatisanndeeiGeliaeamekvgkdGvitve.esksletel 185
                 l d +k  lGPkg   +l    G  k+tkdG t+ +e++++++     a ++ ++a+  +d++GdGtt a+++   ++k+  ++++ G+ p  +  Gie a ++v++ ++  k+sk+ +d+  + q+a+ s    +++   +a+ +  +  d v  ++ e+++l+ ++
  MMETSP1137-20121227|9643_1  31 LQDVLKSNLGPKGTLKMLVGGSGDIKLTKDGNTLLHEMQIQNP----TACMIARIATAQDDITGDGTTSAVLIVGELMKQAERHLSDGVHPRLICDGIELAKTAVLAYIDeiKTSKDTTDRALLMQIAQASLR--TKMHAELADLFTDIVVDAVRVIKrEGQELDLHM 192
                 7788999*****************************9988766....6889999***********************************************99999999833468999999999999988766..345555556555555555544421344443333 PP

  == domain 2    score: 43.6 bits;  conditional E-value: 7.5e-15
   TIGR02348 387 lkekkarvedalnatraaveeG.ivaGGGvallraaeklee.lkeksedekvGveivkraleaPlrqiaenaGkdgavvvekvkek...kdeevGfnaatdeyedlveaGiidpakvtrsalqnaasiagllltteavv 520
                 + + k+ v d l+a   a+ +G +v+G G   + +++kl e  ++     k+Gv+    al    +++aenaG+dg+  + k++e+    ++++Gf+ +t++  d  eaGi d  +v r+ l  aa i++ ll  + v+
  MMETSP1137-20121227|9643_1 385 IAQIKDAVRDGLRAVANAMTDGfLVPGAGGIEVMCHAKLIEyRNSVVGRAKLGVQAFADALLVIPKTLAENAGYDGQDSLMKLQEShmaGSAKIGFDINTGDPMDPAEAGIWDNFRVKRQMLDSAAVISAQLLLVDEVI 523
                 5567999***************4589966666666666655266667799*************99***********99888888772224679**********************************977655554444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (532 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       214  (0.0521697); expected 82.0 (0.02)
Passed bias filter:                      122  (0.0297416); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                        10  (0.00243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.58u 0.18s 00:00:00.76 Elapsed: 00:00:00.84
# Mc/sec: 835.93
//
Query:       MMETSP1137-20121227|9644_1  [L=217]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (217 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        66  (0.0160897); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.13s 00:00:00.33 Elapsed: 00:00:00.33
# Mc/sec: 867.93
//
Query:       MMETSP1137-20121227|9645_1  [L=791]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (791 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       169  (0.0411994); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.47u 0.14s 00:00:00.61 Elapsed: 00:00:00.50
# Mc/sec: 2088.07
//
Query:       MMETSP1137-20121227|9646_1  [L=257]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.061   10.0   1.6      0.092    9.4   1.1    1.2  1  TIGR01513 NAPRTase_put: nicotinate phosphoribosyltransferase


Domain annotation for each model (and alignments):
>> TIGR01513  NAPRTase_put: nicotinate phosphoribosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   1.1   2.2e-05     0.092     137     187 ..      10      58 ..       7      61 .. 0.78

  Alignments for each domain:
  == domain 1    score: 9.4 bits;  conditional E-value: 2.2e-05
   TIGR01513 137 RivlaakekkllefglRRaqgldaalkaaraayigGadgtsnvlAgrlygi 187
                 Ri+ ++ + +l+  ++   q  +aa++aa aa i+G   +s v+A + + i
  MMETSP1137-20121227|9646_1  10 RITVITAALVLVSTAAXSWQ--QAAIAAAGAASIAGLVHSSGVQACQMWSI 58 
                 55555555555555555555..59************************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (257 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       167  (0.0407118); expected 82.0 (0.02)
Passed bias filter:                      114  (0.0277913); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.24u 0.16s 00:00:00.40 Elapsed: 00:00:00.45
# Mc/sec: 753.80
//
Query:       MMETSP1137-20121227|9647_1  [L=63]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      0.002   15.6   3.1       0.31    8.4   0.0    2.0  2  TIGR01944 rnfB: electron transport complex, RnfABCDGE type, B subunit
  ------ inclusion threshold ------
       0.15    9.7   6.0        2.5    5.8   0.1    3.3  4  TIGR02167 Liste_lipo_26: bacterial surface protein 26-residue repeat


Domain annotation for each model (and alignments):
>> TIGR01944  rnfB: electron transport complex, RnfABCDGE type, B subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.4   0.0   0.00015      0.31      47      70 ..      17      40 ..       5      45 .. 0.76
   2 !    8.3   0.5   0.00016      0.32      47      62 ..      46      61 ..      40      63 .] 0.89

  Alignments for each domain:
  == domain 1    score: 8.4 bits;  conditional E-value: 0.00015
   TIGR01944 47 tqCgqCGypGCrpyaeaiaegeai 70
                + C    y+GC+ +ae+++ ++a+
  MMETSP1137-20121227|9647_1 17 SXCRGIRYKGCKALAESLTINQAL 40
                5577778***********999885 PP

  == domain 2    score: 8.3 bits;  conditional E-value: 0.00016
   TIGR01944 47 tqCgqCGypGCrpyae 62
                ++C+  Gy+GC+ +ae
  MMETSP1137-20121227|9647_1 46 SDCSGIGYKGCKALAE 61
                79************98 PP

>> TIGR02167  Liste_lipo_26: bacterial surface protein 26-residue repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   0.1    0.0016       3.2       5      14 ..       8      17 ..       8      18 .. 0.89
   2 ?   -1.2   0.0      0.19   3.9e+02       4       8 ..      26      30 ..      25      35 .. 0.81
   3 ?    5.8   0.1    0.0012       2.5       5      14 ..      37      46 ..      37      47 .. 0.87
   4 ?   -1.7   0.0      0.27   5.6e+02       4       8 ..      55      59 ..      54      60 .. 0.87

  Alignments for each domain:
  == domain 1    score: 5.5 bits;  conditional E-value: 0.0016
   TIGR02167  5 CssLtsLDlS 14
                + +Lts++lS
  MMETSP1137-20121227|9647_1  8 NQALTSINLS 17
                579******9 PP

  == domain 2    score: -1.2 bits;  conditional E-value: 0.19
   TIGR02167  4 gCssL 8 
                gC++L
  MMETSP1137-20121227|9647_1 26 GCKAL 30
                89988 PP

  == domain 3    score: 5.8 bits;  conditional E-value: 0.0012
   TIGR02167  5 CssLtsLDlS 14
                + +Lts++lS
  MMETSP1137-20121227|9647_1 37 NQALTSINLS 46
                579******9 PP

  == domain 4    score: -1.7 bits;  conditional E-value: 0.27
   TIGR02167  4 gCssL 8 
                gC++L
  MMETSP1137-20121227|9647_1 55 GCKAL 59
                8**98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (63 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        58  (0.0141394); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.12u 0.14s 00:00:00.26 Elapsed: 00:00:00.39
# Mc/sec: 213.21
//
Query:       MMETSP1137-20121227|9648_1  [L=246]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.6e-77  255.7   0.4    9.2e-77  255.4   0.2    1.0  1  TIGR03633 arc_protsome_A: proteasome endopeptidase complex, archaeal, alpha subunit
    2.2e-26   90.4   0.1      5e-26   89.3   0.0    1.5  2  TIGR03634 arc_protsome_B: proteasome endopeptidase complex, archaeal, beta subunit
    4.2e-06   24.5   0.1    6.1e-06   23.9   0.1    1.2  1  TIGR03690 20S_bact_beta: proteasome, beta subunit
    8.3e-05   20.2   0.0    0.00013   19.6   0.0    1.3  1  TIGR03692 ATP_dep_HslV: ATP-dependent protease HslVU, peptidase subunit
    0.00014   19.3   0.9    0.00028   18.2   0.6    1.6  1  TIGR03691 20S_bact_alpha: proteasome, alpha subunit


Domain annotation for each model (and alignments):
>> TIGR03633  arc_protsome_A: proteasome endopeptidase complex, archaeal, alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  255.4   0.2   1.1e-79   9.2e-77       2     229 ..       3     227 ..       2     228 .. 0.96

  Alignments for each domain:
  == domain 1    score: 255.4 bits;  conditional E-value: 1.1e-79
   TIGR03633   2 aYDraitvfsPdGrlyqveYareavkrgttavGiktkegvvlivdkritsklleaesiekifkiDdhvgaataGlvaDarvlidrarveaqvnrltYdepievevlakkvadlkqqytqvGGvrPfGvalliaGvddk.earlfetdPsGalleykavaiGagrekvlellekeykedlsldeaielalkalakaleeelkaeevevavveveekkfrklskeevekll 229
                  YDraitvfsPdG+l+qveYa eav++gttavG+++k+ +v++v+++ t kl ea+++ ki+k+Dd ++ ++aGl aDarvli+r  +e q++rlt+++  +ve++a  v+ ++q ytq GGvrPfG++ li G d + e+rlf+t+PsG+++ +kavaiG++ ++v+e+lek+y+e+  ld +++la +al +++e     +++evav+ +  + ++ ls+eev+ ++
  MMETSP1137-20121227|9648_1   3 RYDRAITVFSPDGHLFQVEYAMEAVRKGTTAVGVRSKDHIVFAVERKSTAKLQEARTVRKIHKLDDNIVLSFAGLTADARVLINRTLIECQSYRLTFEDSPSVEYVAEYVSGIQQRYTQSGGVRPFGISTLIMGFDADgEPRLFQTEPSGNYTAWKAVAIGRNMKTVKEFLEKNYSEETALD-GVKLACRALLEVVE--AGGKNIEVAVLRK-GQDLQFLSEEEVDVVV 227
                 5**************************************************************************************************************************************98769**************************************9985.8************7..7789*****9987.7789999999988665 PP

>> TIGR03634  arc_protsome_B: proteasome endopeptidase complex, archaeal, beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.3   0.0   6.1e-29     5e-26       1     182 [.      30     211 ..      30     214 .. 0.91
   2 ?    1.2   0.0     0.062        51     131     163 ..     200     232 ..     194     238 .. 0.87

  Alignments for each domain:
  == domain 1    score: 89.3 bits;  conditional E-value: 6.1e-29
   TIGR03634   1 gtTtvGikvkdgvvlAadkraslgnlvasknvkKvfkiddkialtiaGsvgdaqslvrllkaeaklyelrrkkkisvkalatllsnllkss....kflpflvqllvgGvdeeg.pklyslDplGsiiedkytatGsGspvalgvLedeYeedlsleeakklavkaiksaieRDvasGdgidvvvitk 182
                 gtT+vG++ kd++v+A +++ s  +l + ++v+K++k+dd+i l++aG+ +da+ l++    e++ y+l+ + + sv+ +a+ +s + + +     + pf +++l+ G+d +g p+l++ +p+G+++  k +a G  ++++   Le++Y+e+ +l +++kla +a+   +e   a G++i+v+v+ k
  MMETSP1137-20121227|9648_1  30 GTTAVGVRSKDHIVFAVERK-STAKLQEARTVRKIHKLDDNIVLSFAGLTADARVLINRTLIECQSYRLTFEDSPSVEYVAEYVSGIQQRYtqsgGVRPFGISTLIMGFDADGePRLFQTEPSGNYTAWKAVAIGRNMKTVKEFLEKNYSEETAL-DGVKLACRALLEVVE---AGGKNIEVAVLRK 211
                 8****************987.556899**********************************************************9976542223789************96559*************************************877.699******988876...6788888888765 PP

  == domain 2    score: 1.2 bits;  conditional E-value: 0.062
   TIGR03634 131 sGspvalgvLedeYeedlsleeakklavkaiks 163
                  G ++ ++vL +  + ++  ee ++++v+ai++
  MMETSP1137-20121227|9648_1 200 GGKNIEVAVLRKGQDLQFLSEEEVDVVVNAIEA 232
                 68899999****9999999************98 PP

>> TIGR03690  20S_bact_beta: proteasome, beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.9   0.1   7.4e-09   6.1e-06       3     173 ..      28     195 ..      26     210 .. 0.85

  Alignments for each domain:
  == domain 1    score: 23.9 bits;  conditional E-value: 7.4e-09
   TIGR03690   3 phgttivalaykgGvllaGdrratqGnliasrdvekvfkadeysavgiaGtaglavelvklfqvelehyekieGvplslegkanrlaamv.rsnlaaalqGlavvpllvGydleaekGrifsydvvggkeeeeeyesvGsGsvfakgalkklykedlseedavrvavealyd 173
                  +gtt v +  k+ +++a +r++t  +l   r v+k++k d+  ++++aG ++ a  l++   +e + y      + s+e  a+ ++ +  r   +  ++ + +  l++G+d + ++ r+f  + +g ++   +  ++G      k  l k y+e+ +  d v++a +al +
  MMETSP1137-20121227|9648_1  28 RKGTTAVGVRSKDHIVFAVERKSTA-KLQEARTVRKIHKLDDNIVLSFAGLTADARVLINRTLIECQSYRLTFEDSPSVEYVAEYVSGIQqRYTQSGGVRPFGISTLIMGFDAD-GEPRLFQTEPSG-NYTAWKAVAIGRNMKTVKEFLEKNYSEETA-LDGVKLACRALLE 195
                 689*******************996.89999********************99999999999*******988777789999999888764134455679999999*******76.678***998865.666777889999999999999999998765.5678888888865 PP

>> TIGR03692  ATP_dep_HslV: ATP-dependent protease HslVU, peptidase subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.0   1.6e-07   0.00013       1      61 [.      31      89 ..      31     111 .. 0.78

  Alignments for each domain:
  == domain 1    score: 19.6 bits;  conditional E-value: 1.6e-07
   TIGR03692  1 ttilavrkngkvviagdGqvtlgetvlkenarkvrrlyegkvlaGfaGstadaltLferfe 61
                tt + vr ++++v a + + t   +   +++rk+++l +++++  faG tada  L++r  
  MMETSP1137-20121227|9648_1 31 TTAVGVRSKDHIVFAVERKSTAKLQ-EARTVRKIHKL-DDNIVLSFAGLTADARVLINRTL 89
                89999********999887765443.44567777776.5778999**********999865 PP

>> TIGR03691  20S_bact_alpha: proteasome, alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.6   3.4e-07   0.00028      17     208 ..      20     210 ..      11     222 .. 0.83

  Alignments for each domain:
  == domain 1    score: 18.2 bits;  conditional E-value: 3.4e-07
   TIGR03691  17 aelarkGiargrsvvvlsyadGilfvaenps.......aslhkiselydriafaavGkynefenlrraGvryadvrGysydrrdvtaralanvyaqtlGavfte..qekPyevelvvaevgeeteedqlyrltfdGsivderefvvlGGtaeqiaaalkesyeeelsladalrvavqalaaesekekrelkaaslevavld 208
                  e+a   + +g ++v + ++d i+f  e  s       ++++ki +l d i ++ +G   +   l +    +++ + y    +d  + +  + y   +   +t+    +P+ +   +    + + e++l++    G  +   + v++G + +++++ l+++y+ee+ l d +++a +al + +e   +++++     avl 
  MMETSP1137-20121227|9648_1  20 VEYAMEAVRKGTTAVGVRSKDHIVFAVERKStaklqeaRTVRKIHKLDDNIVLSFAGLTADARVLINRT--LIECQSYRLTFEDSPSVEYVAEYVSGIQQRYTQsgGVRPFGISTLIMGF-DADGEPRLFQTEPSGNYTA-WKAVAIGRNMKTVKEFLEKNYSEETAL-DGVKLACRALLEVVEAGGKNIEV-----AVLR 210
                 69999********************99988733333335789***************999998887664..57889999999********************9955589**998887655.5667899******999876.578*********************999.679*******9876655555555.....5544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (246 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       209  (0.0509508); expected 82.0 (0.02)
Passed bias filter:                      114  (0.0277913); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.24u 0.19s 00:00:00.43 Elapsed: 00:00:00.42
# Mc/sec: 773.08
//
Query:       MMETSP1137-20121227|9649_1  [L=182]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.2e-16   56.7   0.0    7.3e-16   56.2   0.0    1.2  1  TIGR01216 ATP_synt_epsi: ATP synthase F1, epsilon subunit
    3.1e-06   24.9   0.0    4.4e-06   24.5   0.0    1.2  1  TIGR03166 alt_F1F0_F1_eps: alternate F1F0 ATPase, F1 subunit epsilon


Domain annotation for each model (and alignments):
>> TIGR01216  ATP_synt_epsi: ATP synthase F1, epsilon subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.2   0.0   3.6e-19   7.3e-16       6     116 ..      53     166 ..      48     176 .. 0.90

  Alignments for each domain:
  == domain 1    score: 56.2 bits;  conditional E-value: 3.6e-19
   TIGR01216   6 vvtpekeiysge.vesvilpgseGelGilpgHaplltalkpGvvrirkenk.eeeliavsgGflev.epdkVtiLadeavrakeideaeaeealeaaekklesaedkkdlaeak 116
                   +p   iy+   ve+vilpg  G +G +p H+p++++lkpGvv i++  + +  ++ v gGf+ + +++k+++ a ea +++e+d ++++  l++ +++ +sa d+k++aea+
  MMETSP1137-20121227|9649_1  53 FTVPAVAIYQDLpVEMVILPGIDGFFGAMPSHVPTISELKPGVVSIQETAGgPLTKYFVPGGFASIgTDSKLRVSALEAATIDELDVDAVKTGLAQYQAAYASATDDKAKAEAE 166
                 5567788897644**********************************9988899************55779**********************************999999887 PP

>> TIGR03166  alt_F1F0_F1_eps: alternate F1F0 ATPase, F1 subunit epsilon
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.5   0.0   2.1e-09   4.4e-06       1      98 [.      50     147 ..      50     168 .. 0.79

  Alignments for each domain:
  == domain 1    score: 24.5 bits;  conditional E-value: 2.1e-09
   TIGR03166   1 rlkillPaevvldkekvtkivaEtesGsfgllprrvDlvaalvpgiliyetedgge.syvAvdeGiL.vkkgaevevsvreAvlgeeLeeLeevvreefl 98 
                 +l+ ++Pa  + ++++v+ ++  + +G fg +p +v  ++ l+pg+++ ++++gg  +   v  G   + +++++ vs+ eA + +eL+   ++v++  +
  MMETSP1137-20121227|9649_1  50 KLTFTVPAVAIYQDLPVEMVILPGIDGFFGAMPSHVPTISELKPGVVSIQETAGGPlTKYFVPGGFAsIGTDSKLRVSALEAATIDELDV--DAVKTGLA 147
                 588999*****************************************9998888752334577777789999999999999999888874..44555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (182 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        93  (0.0226719); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.18u 0.18s 00:00:00.36 Elapsed: 00:00:00.43
# Mc/sec: 558.65
//
Query:       MMETSP1137-20121227|9650_1  [L=126]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.02   12.0   0.1      0.025   11.7   0.0    1.1  1  TIGR02875 spore_0_A: sporulation transcription factor Spo0A


Domain annotation for each model (and alignments):
>> TIGR02875  spore_0_A: sporulation transcription factor Spo0A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0     6e-06     0.025      98     166 ..      46     115 ..      33     122 .. 0.82

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 6e-06
   TIGR02875  98 elGadyyvlkpfdleilaarirqlaektvkdikassstvlsaskae.ktldleaeiteiihelGvpahik 166
                  +Ga   v     le l+a + +la ++ kd+++++ t ++   a   + +l++ i++ i   Gv +hi 
  MMETSP1137-20121227|9650_1  46 RVGATAAVYSAAILEYLTAEVLELAGNASKDLRVKRITPRHLQLAIrGDEELDTLIKATIAGGGVIPHIH 115
                 46888888888899*****************99988777665544338999*****************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (126 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       124  (0.0302292); expected 82.0 (0.02)
Passed bias filter:                      106  (0.0258411); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.15u 0.18s 00:00:00.32 Elapsed: 00:00:00.49
# Mc/sec: 339.40
//
Query:       MMETSP1137-20121227|9651_1  [L=172]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (172 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        48  (0.0117016); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.18s 00:00:00.34 Elapsed: 00:00:00.36
# Mc/sec: 630.61
//
Query:       MMETSP1137-20121227|9652_1  [L=349]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (349 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       125  (0.0304729); expected 82.0 (0.02)
Passed bias filter:                      116  (0.0282789); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.16s 00:00:00.44 Elapsed: 00:00:00.47
# Mc/sec: 980.09
//
Query:       MMETSP1137-20121227|9654_1  [L=306]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (306 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       329  (0.0802048); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.14s 00:00:00.42 Elapsed: 00:00:00.42
# Mc/sec: 961.63
//
Query:       MMETSP1137-20121227|9657_1  [L=119]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (119 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       102  (0.0248659); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.18s 00:00:00.34 Elapsed: 00:00:00.60
# Mc/sec: 261.78
//
Query:       MMETSP1137-20121227|9658_1  [L=300]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (300 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       103  (0.0251097); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.19s 00:00:00.44 Elapsed: 00:00:00.36
# Mc/sec: 1099.91
//
Query:       MMETSP1137-20121227|9659_1  [L=210]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.022   11.7   0.0       0.03   11.2   0.0    1.1  1  TIGR01588 citE: citrate (pro-3S)-lyase, beta subunit


Domain annotation for each model (and alignments):
>> TIGR01588  citE: citrate (pro-3S)-lyase, beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   7.2e-06      0.03     124     184 ..     114     174 ..      94     187 .. 0.80

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 7.2e-06
   TIGR01588 124 maaiesalGvvnaveiaraskrligialaaedyvtdlk.tsrskdGtelfyareaillaara 184
                 +a ies    ++avei r  kr  +i     +y  + k t r++ G e++ +r++ l+   a
  MMETSP1137-20121227|9659_1 114 IALIESGCDAMEAVEIIRR-KRRGAINRVQLQYLQEYKpTRRKHSGCEVMESRQHSLHLKAA 174
                 5779************986.5668999999******995667778**********9986555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (210 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        95  (0.0231594); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.19u 0.18s 00:00:00.37 Elapsed: 00:00:00.28
# Mc/sec: 955.78
//
Query:       MMETSP1137-20121227|9660_1  [L=624]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.6e-07   26.6   0.0    1.5e-06   25.4   0.0    1.5  1  TIGR01790 carotene-cycl: lycopene cyclase family protein
    8.1e-05   20.3   0.0     0.0036   14.9   0.0    2.1  2  TIGR02032 GG-red-SF: geranylgeranyl reductase family
  ------ inclusion threshold ------
      0.053   10.2   0.4       0.59    6.7   0.1    2.3  3  TIGR01988 Ubi-OHases: ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family


Domain annotation for each model (and alignments):
>> TIGR01790  carotene-cycl: lycopene cyclase family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.4   0.0   1.1e-09   1.5e-06       3     161 ..     211     382 ..     210     402 .. 0.76

  Alignments for each domain:
  == domain 1    score: 25.4 bits;  conditional E-value: 1.1e-09
   TIGR01790   3 iviGgGlAglaiAlelakpglrvqlieaapklpfnntygvweddlsdlg.........ladlvehrWsdaye.yrfdeearklkraYgsvdraqlkeellqkleea..vlwleakaikveadavslslvecaggqriqarlVidargfka.lvqyeka.slavgfQaayGvev 161
                 +v+ gG  g+++A +l  +gl v +iea + ++  + + +  ++l++l          l+d+v+ + + +++ +++ +     +     v+ + l e+++q++e++   ++  +  ++v+ +  + +++ +ag+  ++a+lV+d+ g ++ +v++ ++ +   g+ + +G  +
  MMETSP1137-20121227|9660_1 211 VVVCGGNLGILLACALLLRGLTVAVIEAGELRGRAQDWNASRKELHELVrlgvltadeLEDVVGIEFNPMRVgFVGGDDVWLTDVLNVGVKPQVLLETVRQRFERGggKVFERSPLASVVVH-ADGAVLSTAGNAPLRAKLVLDCMGQRSpIVSQLREgAAPDGVCVVVGTCA 382
                 57777888**************************************9988555555556666666665544312333333344445567999************999566666666666665.7888899******************9987766544044456666666655 PP

>> TIGR02032  GG-red-SF: geranylgeranyl reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    3.2   0.1    0.0096        13       1      35 [.     209     242 ..     209     248 .. 0.89
   2 !   14.9   0.0   2.6e-06    0.0036     102     283 ..     314     507 ..     299     512 .. 0.73

  Alignments for each domain:
  == domain 1    score: 3.2 bits;  conditional E-value: 0.0096
   TIGR02032   1 yDvvvvGaGpaGssaAlrlakkGlrVlllekkelp 35 
                 +Dvvv G G  G  +A  l   Gl+V+++e  el 
  MMETSP1137-20121227|9660_1 209 FDVVVCG-GNLGILLACALLLRGLTVAVIEAGELR 242
                 6888887.999*******************98775 PP

  == domain 2    score: 14.9 bits;  conditional E-value: 2.6e-06
   TIGR02032 102 qeagaelllettvlsveiedekvkvevredekkevtakivigAdGakskvakklg..lkkekr.elavalraeveee...veeevdedsvevyidkglvpggYgW.vfPkgdgtanvGvgvls...eekedlkkklkeflaerp....eklkdaeevevkgal..iPirradektvtgnvllvGDAAglVkPltGeGI 283
                 ++ g ++++   ++sv ++ + +++++++  +  ++ak+v +  G++s++ ++l+    ++   +++ ++   +ee    + +++  d+ ++  +k+     Y W  fP+  g a+  +++ +    e  ++ ++++++ +  p     +l+   +++++     +  r     + +++vl vGDA g+  Pl+ +G 
  MMETSP1137-20121227|9660_1 314 ERGGGKVFERSPLASVVVHADGAVLSTAG--NAPLRAKLVLDCMGQRSPIVSQLRegAAPDGVcVVVGTCARGYEEStnvFGDIIFSDVPTMAAGKDGCRTQYFWeAFPASSG-ARDRTFTYMdlePERPSVEDIFEDYWKLLPsyqgVDLEA-LTLQRALFGlfVSYRTSPLAAGWDRVLQVGDASGVQSPLSFGGF 507
                 55666677777777778887777777776..699******************99975332222022223333333321335678888999999999999999***77**9998.777777777888899999999999999998653333333.344444433579999999999******************99996 PP

>> TIGR01988  Ubi-OHases: ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   0.1   0.00043      0.59       3      40 ..     211     247 ..     210     255 .. 0.79
   2 ?    0.7   0.0     0.029        40     127     169 ..     321     363 ..     293     368 .. 0.75
   3 ?   -3.1   0.0      0.41   5.7e+02     278     300 ..     487     509 ..     464     542 .. 0.67

  Alignments for each domain:
  == domain 1    score: 6.7 bits;  conditional E-value: 0.00043
   TIGR01988   3 vIvGgGlvGlalAlaLassadlkvalveakaaekaksp 40 
                 v+v gG  G  lA+aL  ++ l va++ea +++  +++
  MMETSP1137-20121227|9660_1 211 VVVCGGNLGILLACALLLRG-LTVAVIEAGELRGRAQD 247
                 56667889*********777.********988775555 PP

  == domain 2    score: 0.7 bits;  conditional E-value: 0.029
   TIGR01988 127 lapaeveeleresdaveltlsdgetleakLlvgADGanSkvrq 169
                   +  + ++  ++d + l ++ ++ l+akL+  + G++S++ +
  MMETSP1137-20121227|9660_1 321 FERSPLASVVVHADGAVLSTAGNAPLRAKLVLDCMGQRSPIVS 363
                 4555566777889999999999**************9998765 PP

  == domain 3    score: -3.1 bits;  conditional E-value: 0.41
   TIGR01988 278 ervaliGdAAhtvhPlAGQGlNl 300
                 +rv  +GdA+ +  Pl   G+  
  MMETSP1137-20121227|9660_1 487 DRVLQVGDASGVQSPLSFGGFGA 509
                 68999999999999987666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (624 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       109  (0.0265724); expected 82.0 (0.02)
Passed bias filter:                      102  (0.0248659); expected 82.0 (0.02)
Passed Vit filter:                        25  (0.00609459); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.47u 0.17s 00:00:00.64 Elapsed: 00:00:00.60
# Mc/sec: 1372.69
//
Query:       MMETSP1137-20121227|9661_1  [L=566]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     4e-224  742.9   0.0   4.9e-224  742.6   0.0    1.0  1  TIGR01117 mmdA: methylmalonyl-CoA decarboxylase alpha subunit
    2.9e-23   80.3   0.3    1.2e-22   78.3   0.1    1.9  2  TIGR03133 malonate_beta: malonate decarboxylase, beta subunit
    6.1e-22   76.1   1.3    2.7e-18   64.1   0.7    2.9  2  TIGR00515 accD: acetyl-CoA carboxylase, carboxyl transferase, beta subunit
    1.7e-13   48.4   2.1    2.4e-08   31.5   0.0    2.5  2  TIGR00513 accA: acetyl-CoA carboxylase, carboxyl transferase, alpha subunit
    3.7e-08   31.0   0.0    1.1e-07   29.5   0.0    1.7  1  TIGR03134 malonate_gamma: malonate decarboxylase, gamma subunit


Domain annotation for each model (and alignments):
>> TIGR01117  mmdA: methylmalonyl-CoA decarboxylase alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  742.6   0.0  5.9e-227  4.9e-224       5     512 .]      68     566 .]      63     566 .] 0.98

  Alignments for each domain:
  == domain 1    score: 742.6 bits;  conditional E-value: 5.9e-227
   TIGR01117   5 elhekkekikqgggekriekqhekgkltarerlellldegsfveldafvkkratefgldkkelpaegvvtgygtvdgrlvyvfaqdftveggslgemhaakivkildlalklgapvvglndsggariqeavdalkgygdifyrntiasgvvpqisvilgpcaggavyspaltdfilmvdntsqmfitgpqviktvtgeevtaedlggamahasksgvahliaeddedvialirkllsylpsnnmedapevkteddpvrktpelddllpddpnkaydvkdvitaivdngeylelqpyyaknivvgfaridgksvgivanqpkvlagvldidssdkiarfvrfcdafnipivtfvdvpgylpgvdqeyggiirhgakvlyayseatvpkvtiilrkayggaylamgskdlgadvvyayptaeiavmgpegaaniifrkeikeakdpealrkekieeyrekfanpykaaargyvddviepketrakvvsaleileskreklppkkhgnipl 512
                  l e  +  k ggg kri kqh+kgkltarerlellldegsf e d++  +r+++fg++k   p++gvvtg+g vdgr vyvf+qdftv ggsl e ha ki+ki+d a+ +gapv+glndsggariqe+v +l+gy ++f+rn  asgvvpq+svi+gpcaggavyspa+tdf +mv+n+s+mf+tgp+v+ktvt eevt+e lgga +h+++sgvahl a +d ++++++r l+s+lps n e +p+ +ted  +r ++ l++++p+dpn +yd+ d++ +++d+ +++e+   +a ni++gf+r++g++vgivanqpk lag+ldid+s k+arfvrfcd fnipi+tfvdvpg+lpg  qe+ggiirhg+k+l+ay+eatvpkvt+i+rkayggay  m+sk+l  d+ ya+p+ae+avmg +ga++iifr + + a        e ++ y +kfanp  a++rg+vd  i pk+tr+++ + le+l +k++  p kkh nipl
  MMETSP1137-20121227|9661_1  68 RLAEAEAIAKLGGGPKRIAKQHAKGKLTARERLELLLDEGSFREYDQLKTHRCVDFGMEKDMPPGDGVVTGHGLVDGRRVYVFSQDFTVFGGSLSETHAEKICKIMDQAVLVGAPVIGLNDSGGARIQEGVASLAGYAEVFQRNVDASGVVPQLSVIMGPCAGGAVYSPAMTDFTMMVENSSYMFVTGPEVVKTVTNEEVTSEVLGGARTHTRTSGVAHLSALNDLEALMKMRSLVSFLPSSNREPPPTRHTEDPRNRADEALETMVPQDPNVPYDMGDLVRRVLDDRHLFEVSSAFAANILTGFGRMEGRTVGIVANQPKELAGCLDIDASVKAARFVRFCDCFNIPILTFVDVPGFLPGRAQEHGGIIRHGSKLLFAYAEATVPKVTVITRKAYGGAYDVMSSKHLRGDINYAWPSAEVAVMGAKGAVEIIFRGH-NIA--------EETAAYEHKFANPLAASQRGFVDACISPKTTRQRICEDLELLRNKKVTGPLKKHSNIPL 566
                 5666666678899**************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************88.223........34689*****************************************************8 PP

>> TIGR03133  malonate_beta: malonate decarboxylase, beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.3   0.1   1.4e-25   1.2e-22       6     183 ..      94     263 ..      92     270 .. 0.87
   2 ?   -1.5   0.0      0.31   2.5e+02      40      70 ..     359     389 ..     355     395 .. 0.79

  Alignments for each domain:
  == domain 1    score: 78.3 bits;  conditional E-value: 1.4e-25
   TIGR03133   6 anAreRikallDegsfkellgpfdrvtsPhLallgiveqfDDGvvvgkgkldgkpvvviaqegkFiGGsvGEvhGaKivgllelaiednkkekktavvllletGGVRLqEANaGllaiaeimraildlraavpvigliggkvGafGGmgivaalcsaliv.seegRlglsGpeVieqea 183
                 ++AreR++ llDegsf+e+ + +++ +    ++ ++++   DGvv+g+g +dg+ v+v +q+ +  GGs+ E h  Ki +++++a+        + v+ l ++GG R+qE  a l+  ae+ +  +d+   vp +++i g   + GG     a+++  ++  +++ + ++GpeV+++++
  MMETSP1137-20121227|9661_1  94 LTARERLELLLDEGSFREYDQLKTHRCVDFGMEKDMPP--GDGVVTGHGLVDGRRVYVFSQDFTVFGGSLSETHAEKICKIMDQAV-----LVGAPVIGLNDSGGARIQEGVASLAGYAEVFQRNVDASGVVPQLSVIMGP--CAGGAVYSPAMTDFTMMvENSSYMFVTGPEVVKTVT 263
                 68****************97666655555555555554..6********************************************9.....5667799999**************************************97..7899999999988765515667899*******9875 PP

  == domain 2    score: -1.5 bits;  conditional E-value: 0.31
   TIGR03133  40 giveqfDDGvvvgkgkldgkpvvviaqegkF 70 
                 ++ ++f   +++g g+++g++v ++a + k 
  MMETSP1137-20121227|9661_1 359 EVSSAFAANILTGFGRMEGRTVGIVANQPKE 389
                 667778888999**********999987654 PP

>> TIGR00515  accD: acetyl-CoA carboxylase, carboxyl transferase, beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.1   0.7   3.3e-21   2.7e-18      56     242 ..      93     266 ..      85     272 .. 0.89
   2 !    8.4   0.0   0.00031      0.25     110     233 ..     368     494 ..     327     554 .. 0.65

  Alignments for each domain:
  == domain 1    score: 64.1 bits;  conditional E-value: 3.3e-21
   TIGR00515  56 rvdakerieslldeksfeelneelrpkdvlkfkdkkkykdrikkaqketdekdavvtgkgkldglPivvavldfsfmgGslGsvvGeklvraiekavaervplvivsasGGarmqeallslmqmaktsaalkklrekkllfisvltdPtlGGvsasfamlGdlilaePkaliGfaGrrvieqtvrek 242
                 +++a+er+e llde+sf+e ++ l+++  ++f             +k+    d vvtg+g +dg  + v   df+  gGsl     ek+++++++av    p++ +  sGGar+qe++ sl   a +           ++ +sv+  P  GG   s am    ++ e  + +  +G+ v++   +e+
  MMETSP1137-20121227|9661_1  93 KLTARERLELLLDEGSFREYDQ-LKTHRCVDFGM-----------EKDMPPGDGVVTGHGLVDGRRVYVFSQDFTVFGGSLSETHAEKICKIMDQAVLVGAPVIGLNDSGGARIQEGVASLAGYAEVFQRNVD-ASGVVPQLSVIMGPCAGGAVYSPAMTDFTMMVENSSYMFVTGPEVVKTVTNEE 266
                 689****************985.99999999976...........6777889*********************************************************************999887543322.3345899******************9999999*************99877766 PP

  == domain 2    score: 8.4 bits;  conditional E-value: 0.00031
   TIGR00515 110 vvtgkgkldglPivvavldfsfmgGsl...GsvvGeklvraiekavaervplvivsasGGarmqeallslmqmaktsaalkklrekkllfisvltdPtlGG...vsasfamlGdlilaePkaliGfaGrr 233
                 ++tg g+++g  + +++ + +  +G l    sv  +++vr  +      +++v v      r qe       +   s  l  + e+ ++ ++v+t  ++GG   v +s  + Gd++ a P a +   G +
  MMETSP1137-20121227|9661_1 368 ILTGFGRMEGRTVGIVANQPKELAGCLdidASVKAARFVRFCDCFNIPILTFVDVPGFLPGRAQEHGGI---IRHGSKLLFAYAEATVPKVTVITRKAYGGaydVMSSKHLRGDINYAWPSAEVAVMGAK 494
                 556666666666666666666666666333355555555555544444444444433334566665433...334577788999****************977778899999*********988777754 PP

>> TIGR00513  accA: acetyl-CoA carboxylase, carboxyl transferase, alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.3   1.8e-06    0.0015     139     231 ..     168     260 ..     156     272 .. 0.85
   2 !   31.5   0.0   2.9e-11   2.4e-08      98     215 ..     368     476 ..     331     536 .. 0.70

  Alignments for each domain:
  == domain 1    score: 15.8 bits;  conditional E-value: 1.8e-06
   TIGR00513 139 kalrlmklaekfklPiitfidtkGaypGig.aeerGqseaiaknlremarlkvPvicvviGeGGsGGalaigvgdkvamleysvys.visPegca 231
                 k  ++m++a   + P+i + d+ Ga    g a   G +e   +n+   a+  vP ++v++G    G   + +++d   m+e+s y  v  Pe + 
  MMETSP1137-20121227|9661_1 168 KICKIMDQAVLVGAPVIGLNDSGGARIQEGvASLAGYAEVFQRNVD--ASGVVPQLSVIMGPCAGGAVYSPAMTDFTMMVENSSYMfVTGPEVVK 260
                 7789*********************8765526678*********97..6778*********9998888999**************8345588665 PP

  == domain 2    score: 31.5 bits;  conditional E-value: 2.9e-11
   TIGR00513  98 ivggvakldgrPvvviGhqkGrdtkeklarnfGmpaPeGyrkalrlmklaekfklPiitfidtkGaypGigaeerGqseaiaknlremarlkvPvicvviGeGGsGGalaigvgdkva 215
                 i++g ++++gr v ++ +q     k +la   G  + +   ka r++++ + f++Pi+tf+d +G  pG++ e+ G     +k l+ +a+ +vP ++ vi     GGa  +  + +++
  MMETSP1137-20121227|9661_1 368 ILTGFGRMEGRTVGIVANQP----K-ELA---GCLDIDASVKAARFVRFCDCFNIPILTFVDVPGFLPGRAQEHGGIIRHGSKLLFAYAEATVPKVT-VITRKAYGGAYDVMSSKHLR 476
                 55566666666666555542....1.222...3444445579****************************************************985.67788999999998888775 PP

>> TIGR03134  malonate_gamma: malonate decarboxylase, gamma subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.5   0.0   1.3e-10   1.1e-07      20     223 ..     365     553 ..     343     561 .. 0.85

  Alignments for each domain:
  == domain 1    score: 29.5 bits;  conditional E-value: 1.3e-10
   TIGR03134  20 gpsvvvgsaelagekvtvigvvedannkfprvragevgleeglalAqavlavieedkdkekrpivlivDtpsqalgrreEllGlnealAalakalaearlaghpvialvvgkaisGaF...LahGlqadrilaLddpgaevhvMdlesvaRvtkrsveeLeelaksvpvfApgvenfaklGaveelleeadadapaeaqlaevraal 223
                  +++++g + ++g++v +++  ++         ag ++++ +++ A+ v+     +      pi++ vD+p+  +gr +E  G+ +  ++l  a+aea     p +++++ ka +Ga+    +  l  d  +a   p+aev+vM+ +++  ++ r ++  ee a+    fA  +    + G+v++ ++ ++  +   ++l+ +r+++
  MMETSP1137-20121227|9661_1 365 AANILTGFGRMEGRTVGIVANQPKE-------LAGCLDIDASVKAARFVRFCDCFN-----IPILTFVDVPGFLPGRAQEHGGIIRHGSKLLFAYAEAT---VPKVTVITRKAYGGAYdvmSSKHLRGDINYAW--PSAEVAVMGAKGAVEIIFRGHNIAEETAAYEHKFANPLAA-SQRGFVDACISPKTTRQRICEDLELLRNKK 553
                 4467888888888888888877777.......99**************98765555.....9**********************************997...599************954234568899999**..***********************************88766.566999999999998887788888877765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (566 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       104  (0.0253535); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.44u 0.15s 00:00:00.59 Elapsed: 00:00:00.61
# Mc/sec: 1224.69
//
Query:       MMETSP1137-20121227|9662_1  [L=380]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.01   14.0   0.0       0.19    9.9   0.0    2.5  2  TIGR02096 TIGR02096: conserved hypothetical protein


Domain annotation for each model (and alignments):
>> TIGR02096  TIGR02096: conserved hypothetical protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.0     0.021        86      98     116 ..     154     173 ..      83     175 .. 0.86
   2 ?    9.9   0.0   4.7e-05      0.19      16      51 ..     232     267 ..     220     299 .. 0.80

  Alignments for each domain:
  == domain 1    score: 1.3 bits;  conditional E-value: 0.021
   TIGR02096  98 svrgvtffeld.dGkIeret 116
                  +rg  f eld +GkI+ ++
  MMETSP1137-20121227|9662_1 154 GLRGTMFLELDeEGKIAYVC 173
                 58999999999999998776 PP

  == domain 2    score: 9.9 bits;  conditional E-value: 4.7e-05
   TIGR02096  16 mdavlallaeDvlyddeagsrklktkdqlarflael 51 
                  d++++ ++eD+ y+d   +++  +k+q+a+f+ ++
  MMETSP1137-20121227|9662_1 232 PDEAVRCFSEDIRYEDFNYPDPFLGKEQVAAFVTAF 267
                 58999***************************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (380 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       102  (0.0248659); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.28u 0.16s 00:00:00.44 Elapsed: 00:00:00.40
# Mc/sec: 1253.90
//
Query:       MMETSP1137-20121227|9664_1  [L=191]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (191 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       155  (0.0377864); expected 82.0 (0.02)
Passed bias filter:                      112  (0.0273038); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.14s 00:00:00.33 Elapsed: 00:00:00.31
# Mc/sec: 813.22
//
Query:       MMETSP1137-20121227|9665_1  [L=433]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (433 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       178  (0.0433935); expected 82.0 (0.02)
Passed bias filter:                       38  (0.00926377); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.14s 00:00:00.58 Elapsed: 00:00:00.75
# Mc/sec: 762.02
//
Query:       MMETSP1137-20121227|9666_1  [L=73]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (73 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        35  (0.00853242); expected 82.0 (0.02)
Passed bias filter:                       34  (0.00828864); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.25
# Mc/sec: 385.41
//
Query:       MMETSP1137-20121227|9667_1  [L=325]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.4e-90  300.9   3.5    3.9e-90  300.7   2.4    1.0  1  TIGR02350 prok_dnaK: chaperone protein DnaK
    4.1e-66  221.5   0.4    4.9e-66  221.3   0.3    1.0  1  TIGR01991 HscA: Fe-S protein assembly chaperone HscA
    0.00024   17.6   0.1    0.00062   16.2   0.0    1.7  2  TIGR01312 XylB: xylulokinase


Domain annotation for each model (and alignments):
>> TIGR02350  prok_dnaK: chaperone protein DnaK
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  300.7   2.4   2.8e-93   3.9e-90     307     587 ..       3     292 ..       1     301 [. 0.90

  Alignments for each domain:
  == domain 1    score: 300.7 bits;  conditional E-value: 2.8e-93
   TIGR02350 307 tkepvkkalkdaklsaseidevilvGGstriPavqelvkelvg.kepnksvnPdevvaiGaaiqggvlkg....evkdvlLldvtPLsLgietlGgvltkliernttiPtkksqvfstaednqpaveihvlqGerelaadnkslgrfeLtgippaPrGvpqievtfdidanGilsvsakdkatgkeqsititas.sglseeeiermvkeaeanaeedkkkkeevearneadsliyqaektlkeagdk..leeeekekiekaveelkealkeedveek..ikakteelekal 587
                 ++++vk++lkda ++++eidev+lvGGstriP+vq+l+ke+++ kepnks+nPde+va Gaa+qggvl+g    + kd+lL+dvtPLsLgiet  g   +          k   +fst +dnqp v+i+v+ Ger +++dn+ lg+f+L+gipp+PrG pqievtf++danGil+vsa++k+tg++++iti+a+ + ls+eeie+mv+e e+n+e+dk+  ++vearn  + ++y+ + +++e   +  ++e++k+ +++a++++ + l++++ +ek   +a+ ++le+++
  MMETSP1137-20121227|9667_1   3 CMDTVKAVLKDASVKKEEIDEVVLVGGSTRIPKVQQLLKEYFNgKEPNKSINPDEAVAYGAAVQGGVLSGaaseDTKDLLLIDVTPLSLGIETAAGDD-EYHPEADDYSGKEVATFSTYADNQPGVNIKVYEGERRFTKDNNILGKFDLNGIPPMPRGRPQIEVTFNVDANGILQVSANEKSTGRSEQITIKAEkGRLSDEEIEKMVREEEENREKDKEYADKVEARNAFEGYVYSLRTSVAEDRVQsaMSEDDKTAMNTAIDDALKWLDDNQSAEKdeYDARRKDLENVA 292
                 7899************************************9866************************98444459******************9965.556666778999********************************************************************************975278********************************************99754433999************999999888766334556666666555 PP

>> TIGR01991  HscA: Fe-S protein assembly chaperone HscA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  221.3   0.3   3.6e-69   4.9e-66     297     565 ..       4     277 ..       1     303 [. 0.90

  Alignments for each domain:
  == domain 1    score: 221.3 bits;  conditional E-value: 3.6e-69
   TIGR01991 297 leivrralrdaglkveeikevvlvGGstrvplvrqavaelFk.kepltdldPdevvAlGAalqadlLaknkrke..dllLlDviPLsLGletmGGlvekiipRnttiPvakaqeFttykDgqtalaihvvqGeRelvedcrsLarFeLrgippmaAGaarirvtfqvDadGllsvsaqekltgveakievkpsyg.LsdeeiekmlkdslknaeeDmeaRalaekkveaerilealekalkadk..dLlseeelkaikaaleklekaleeddaea 565
                 +++v+++l+da++k+eei+evvlvGGstr+p+v+q ++e+F+ kep ++++Pde vA GAa+q  +L++  +++  dllL+Dv+PLsLG+et  G  e   p       ++   F ty D+q +++i+v  GeR + +d+  L++F+L+gippm+ G  +i+vtf+vDa+G+l+vsa+ek+tg  ++i++k   g Lsdeeiekm+++  +n e+D+e   + e++   e  + +l++++++d+    +se++++a+++a++++ k l+++++++
  MMETSP1137-20121227|9667_1   4 MDTVKAVLKDASVKKEEIDEVVLVGGSTRIPKVQQLLKEYFNgKEPNKSINPDEAVAYGAAVQGGVLSGAASEDtkDLLLIDVTPLSLGIETAAGDDE-YHPEADDYSGKEVATFSTYADNQPGVNIKVYEGERRFTKDNNILGKFDLNGIPPMPRGRPQIEVTFNVDANGILQVSANEKSTGRSEQITIKAEKGrLSDEEIEKMVREEEENREKDKEYADKVEARNAFEGYVYSLRTSVAEDRvqSAMSEDDKTAMNTAIDDALKWLDDNQSAE 277
                 7889*************************************6489**********************9877665559******************866.578999999999********************************************************************************87644******************************99999999999999998522699************99988887766543 PP

>> TIGR01312  XylB: xylulokinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0   4.5e-07   0.00062     388     440 ..      18      72 ..       2      96 .. 0.78
   2 ?   -2.2   0.0      0.18   2.4e+02     368     380 ..     230     242 ..     222     282 .. 0.60

  Alignments for each domain:
  == domain 1    score: 16.2 bits;  conditional E-value: 4.5e-07
   TIGR01312 388 glkikeirliGGGaksevwrqiladilglev..vvpeeeegaalGaAilAaialg 440
                   +i+e++l+GG ++ + ++q+l + ++ +   +  + +e++a+GaA+++ + +g
  MMETSP1137-20121227|9667_1  18 KEEIDEVVLVGGSTRIPKVQQLLKEYFNGKEpnKSINPDEAVAYGAAVQGGVLSG 72 
                 357899*********************97651155569***********988776 PP

  == domain 2    score: -2.2 bits;  conditional E-value: 0.18
   TIGR01312 368 vlegvafalrdsl 380
                 ++eg +++lr s+
  MMETSP1137-20121227|9667_1 230 AFEGYVYSLRTSV 242
                 5566666665554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (325 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       331  (0.0806923); expected 82.0 (0.02)
Passed bias filter:                      189  (0.0460751); expected 82.0 (0.02)
Passed Vit filter:                        21  (0.00511945); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.32u 0.17s 00:00:00.49 Elapsed: 00:00:00.54
# Mc/sec: 794.38
//
Query:       MMETSP1137-20121227|9670_1  [L=34]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (34 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        38  (0.00926377); expected 82.0 (0.02)
Passed bias filter:                       37  (0.00901999); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.19s 00:00:00.32 Elapsed: 00:00:00.30
# Mc/sec: 149.59
//
Query:       MMETSP1137-20121227|9671_1  [L=359]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (359 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       128  (0.0312043); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.18s 00:00:00.46 Elapsed: 00:00:00.30
# Mc/sec: 1579.47
//
Query:       MMETSP1137-20121227|9672_1  [L=106]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (106 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       178  (0.0433935); expected 82.0 (0.02)
Passed bias filter:                      109  (0.0265724); expected 82.0 (0.02)
Passed Vit filter:                        18  (0.0043881); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.14s 00:00:00.29 Elapsed: 00:00:00.28
# Mc/sec: 482.44
//
Query:       MMETSP1137-20121227|9673_1  [L=159]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.1e-12   43.7   0.0      8e-12   43.0   0.0    1.3  1  TIGR02540 gpx7: putative glutathione peroxidase Gpx7


Domain annotation for each model (and alignments):
>> TIGR02540  gpx7: putative glutathione peroxidase Gpx7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.0   0.0   1.9e-15     8e-12      54     111 ..      87     144 ..      73     151 .. 0.90

  Alignments for each domain:
  == domain 1    score: 43.0 bits;  conditional E-value: 1.9e-15
   TIGR02540  54 shfnvlafpcnqfgesepksskeiesfarknygvtfpifskikilgseaepafrflvd 111
                 ++++vlafpcnqf  +ep+  +++e+  r ++ v f  ++k+ + g+ +++ +rfl  
  MMETSP1137-20121227|9673_1  87 EKLEVLAFPCNQFLGQEPDDAEQVETCMRAKFDVNFRTMEKVLVNGPSTHAVYRFLRT 144
                 4689***************************************************965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (159 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        57  (0.0138957); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.16u 0.13s 00:00:00.29 Elapsed: 00:00:00.28
# Mc/sec: 723.66
//
Query:       MMETSP1137-20121227|9674_1  [L=196]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (196 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       114  (0.0277913); expected 82.0 (0.02)
Passed bias filter:                      103  (0.0251097); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.19s 00:00:00.41 Elapsed: 00:00:00.79
# Mc/sec: 327.47
//
Query:       MMETSP1137-20121227|9675_1  [L=276]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.7e-50  167.8   0.2    8.4e-50  167.0   0.2    1.3  1  TIGR00493 clpP: ATP-dependent Clp protease, proteolytic subunit ClpP


Domain annotation for each model (and alignments):
>> TIGR00493  clpP: ATP-dependent Clp protease, proteolytic subunit ClpP
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  167.0   0.2     2e-53   8.4e-50      18     190 ..      42     225 ..      36     227 .. 0.92

  Alignments for each domain:
  == domain 1    score: 167.0 bits;  conditional E-value: 2e-53
   TIGR00493  18 fdiysrllkeriillsgevedevansivaqllfleaedpekdislyinspGGsitaGlaiydtmqfikpdvsticiGlaasmGafllaaGakGkrlalpnsrimihqpl....GGaqG.......qasdieiqakeilklkkklnellaektGqslekiekdterdfflsaeeakeyGlidkvl 190
                  d++ r+ +eri++++++++d+ an+i+a llfle ed +  +s+y+n  GG++++Gla+ydtmq++  +++t+ iG+ a + af+ a+G+kGkr+alpn+r m+ +p        +G       qa+++ ++  e+l+ kk+++e +a+ tGq+++k+e d +rdf+l a ea +yGlid++l
  MMETSP1137-20121227|9675_1  42 IDVFNRMYRERIMFMGQDIDDDFANTIIAVLLFLENEDRTAPVSMYMNVGGGVMKSGLAMYDTMQMMPYEIQTVNIGMCAQIAAFIAASGTKGKRFALPNARFMMQNPRieppVDNKGqprqrimQATEMRLEVAEVLRDKKRMIEGFASFTGQPIDKLELDFKRDFYLNAYEASQYGLIDQLL 225
                 69******************************************************************************************************99875222223344222233479*******************************************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (276 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        77  (0.0187713); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.25u 0.17s 00:00:00.42 Elapsed: 00:00:00.30
# Mc/sec: 1214.30
//
Query:       MMETSP1137-20121227|9677_1  [L=179]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      1e-16   59.1   0.0    1.3e-16   58.7   0.0    1.1  1  TIGR01628 PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family
    1.4e-13   48.5   0.0      2e-13   48.0   0.0    1.1  1  TIGR01622 SF-CC1: splicing factor, CC1-like family
    3.7e-11   41.0   0.3    5.1e-11   40.6   0.0    1.3  2  TIGR01661 ELAV_HUD_SF: ELAV/HuD family splicing factor
    8.5e-11   38.8   0.0    1.1e-10   38.5   0.0    1.1  1  TIGR01642 U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor
    1.2e-07   29.5   0.0    1.4e-07   29.3   0.0    1.1  1  TIGR01659 sex-lethal: sex-lethal family splicing factor
    2.8e-06   24.2   0.0    2.8e-06   24.2   0.0    2.1  2  TIGR01648 hnRNP-R-Q: hnRNP-R, Q splicing factor family
    0.00067   16.3   0.2     0.0011   15.6   0.0    1.4  1  TIGR01645 half-pint: poly-U binding splicing factor, half-pint family


Domain annotation for each model (and alignments):
>> TIGR01628  PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.7   0.0   2.3e-19   1.3e-16     285     362 ..      85     162 ..      76     166 .. 0.95

  Alignments for each domain:
  == domain 1    score: 58.7 bits;  conditional E-value: 2.3e-19
   TIGR01628 285 gvNlYvkNlddtvddekLrelFeefGeitSakvmldekekSkgFGFVcfssqeeAnkAvtelhgkilngkPLyvalAq 362
                 g+ l + Nld +v ++ + elF e+Gei+Sa v++ +++kS+gF FV ++ + +A+kA+ + +g  l+gkPL +++ q
  MMETSP1137-20121227|9677_1  85 GTKLRISNLDLNVSSQXIEELFMEIGEIKSAEVVMAPNGKSRGFAFVVYKRKIDAQKAIDTYNGVPLDGKPLKINVVQ 162
                 67899*******************************************************************999876 PP

>> TIGR01622  SF-CC1: splicing factor, CC1-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.0   0.0   3.3e-16     2e-13     191     305 ..      57     170 ..      51     176 .. 0.85

  Alignments for each domain:
  == domain 1    score: 48.0 bits;  conditional E-value: 3.3e-16
   TIGR01622 191 ivqaseAEKNraakaatelsgdipnsiadlkLYvGnlhfnitEqeLrqiFepFGeielvqlqkDpetGrskGyGFiqFsdaeeakeAleklNGlelAGReikvglasDvteesda 305
                 iv++s A   + a +++       +  + +kL + nl  n++ q + ++F   Gei++ ++ + p++ +s+G+ F+ ++    a++A+ + NG+ l G+++k+  ++    +s+a
  MMETSP1137-20121227|9677_1  57 IVKPSVAATTLSAITSQAALKAAGGLTTGTKLRISNLDLNVSSQXIEELFMEIGEIKSAEVVMAPNG-KSRGFAFVVYKRKIDAQKAIDTYNGVPLDGKPLKINVVQSGPATSAA 170
                 677777777777765555554555567789***********************************98.************************************99876666555 PP

>> TIGR01661  ELAV_HUD_SF: ELAV/HuD family splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.0       2.5   1.5e+03     232     251 ..      55      74 ..      40      80 .. 0.58
   2 !   40.6   0.0   8.7e-14   5.1e-11       4      80 ..      86     161 ..      83     175 .. 0.90

  Alignments for each domain:
  == domain 1    score: -3.7 bits;  conditional E-value: 2.5
   TIGR01661 232 qhavaqqaaaqrasplaadg 251
                 +  v ++ aa++ s +++++
  MMETSP1137-20121227|9677_1  55 SAIVKPSVAATTLSAITSQA 74 
                 34445555555555555544 PP

  == domain 2    score: 40.6 bits;  conditional E-value: 8.7e-14
   TIGR01661   4 tnlivnylPqtmtqeeirslftsiGeiescklvrdkvtGqslGyGfvnyvreedaekavnslnGlrlqnktikvsya 80 
                 t l +  l  +++ + i  lf  iGei s+ +v    +G+s G+ fv y r+ da+ka++++nG+ l  k +k+ + 
  MMETSP1137-20121227|9677_1  86 TKLRISNLDLNVSSQXIEELFMEIGEIKSAEVVMA-PNGKSRGFAFVVYKRKIDAQKAIDTYNGVPLDGKPLKINVV 161
                 7888999999*********************9985.68********************************9998765 PP

>> TIGR01642  U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.5   0.0   1.8e-13   1.1e-10     278     372 ..      67     160 ..      46     172 .. 0.81

  Alignments for each domain:
  == domain 1    score: 38.5 bits;  conditional E-value: 1.8e-13
   TIGR01642 278 inlkaveklvnsktvldsedklyignLPldlkddqvkeLLesFGdLkaFnliKdlatGlsKGyaFceykdssvtdlAiaaLnGiklgdkkLnvkr 372
                 + + + +   ++ ++l    kl i+nL l++  + + eL  + G++k+ +++    +G+s+G+aF++yk   +++ Ai + nG+ l +k L++  
  MMETSP1137-20121227|9677_1  67 LSAITSQAALKAAGGLTTGTKLRISNLDLNVSSQXIEELFMEIGEIKSAEVVMA-PNGKSRGFAFVVYKRKIDAQKAIDTYNGVPLDGKPLKINV 160
                 33333434467788899999*******************************986.57*******************************9998765 PP

>> TIGR01659  sex-lethal: sex-lethal family splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.3   0.0   2.5e-10   1.4e-07      89     187 ..      66     164 ..      27     169 .. 0.79

  Alignments for each domain:
  == domain 1    score: 29.3 bits;  conditional E-value: 2.5e-10
   TIGR01659  89 slnslgsggs.ddndtrasgtnlivnylpqdmtdrelyalfrtigpintcrimrdyktgysfgyafvdfaseadsqraikslngitvrnkrlkvsyarpg 187
                 +l +  s ++    ++ ++gt l +  l  +++ + +  lf  ig i +  ++     g s g+afv +  ++d+q+ai++ ng+ +  k lk+   + g
  MMETSP1137-20121227|9677_1  66 TLSAITSQAAlKAAGGLTTGTKLRISNLDLNVSSQXIEELFMEIGEIKSAEVVMA-PNGKSRGFAFVVYKRKIDAQKAIDTYNGVPLDGKPLKINVVQSG 164
                 344444433303466778999999999999999999999********99998765.5799*************************999999999877665 PP

>> TIGR01648  hnRNP-R-Q: hnRNP-R, Q splicing factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   3.7      0.32   1.9e+02     367     403 ..      17      52 ..       5      81 .. 0.79
   2 !   24.2   0.0   4.9e-09   2.8e-06      67     120 ..      94     147 ..      77     161 .. 0.83

  Alignments for each domain:
  == domain 1    score: -1.6 bits;  conditional E-value: 0.32
   TIGR01648 367 sirgrgrgaagsraaGvrGlglrGyeayrglysgyhe 403
                 + r rgrg++g r   +rG    G  ++rg  s y++
  MMETSP1137-20121227|9677_1  17 QARPRGRGRGGGR-GEGRGAARSGRGSGRGTSSPYQK 52 
                 4566777777778.55689999999999999888886 PP

  == domain 2    score: 24.2 bits;  conditional E-value: 4.9e-09
   TIGR01648  67 PrdlyedelvPlfekvGkiyelrlmmdldGknrGyafvtfcnkeeakeavkeln 120
                   ++    +  lf ++G+i    ++m  +Gk rG+afv++  k +a++a+   n
  MMETSP1137-20121227|9677_1  94 DLNVSSQXIEELFMEIGEIKSAEVVMAPNGKSRGFAFVVYKRKIDAQKAIDTYN 147
                 555555566679999**********************************98776 PP

>> TIGR01645  half-pint: poly-U binding splicing factor, half-pint family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   1.9e-06    0.0011     208     277 ..      93     161 ..      85     179 .] 0.75

  Alignments for each domain:
  == domain 1    score: 15.6 bits;  conditional E-value: 1.9e-06
   TIGR01645 208 vhpdlseedlksvfeafGeivkcklaraptlrkhkGfGflefenlqsqseaiasmnlfdlGGqllrvGka 277
                 +  ++s + +  +f   Gei++ ++  ap + k +Gf f+ ++++   ++ai + n   l G+ l++   
  MMETSP1137-20121227|9677_1  93 LDLNVSSQXIEELFMEIGEIKSAEVVMAPNG-KSRGFAFVVYKRKIDAQKAIDTYNGVPLDGKPLKINVV 161
                 5556788888888989999999998888876.46899999999999999999999888888888877544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (179 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        85  (0.0207216); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.25u 0.17s 00:00:00.42 Elapsed: 00:00:00.30
# Mc/sec: 787.53
//
Query:       MMETSP1137-20121227|9678_1  [L=259]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (259 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        90  (0.0219405); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.16s 00:00:00.40 Elapsed: 00:00:00.36
# Mc/sec: 949.59
//
Query:       MMETSP1137-20121227|9679_1  [L=98]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (98 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        76  (0.0185275); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.15s 00:00:00.28 Elapsed: 00:00:00.31
# Mc/sec: 417.26
//
Query:       MMETSP1137-20121227|9682_1  [L=76]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (76 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        37  (0.00901999); expected 82.0 (0.02)
Passed bias filter:                       28  (0.00682594); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:00.25
# Mc/sec: 401.25
//
Query:       MMETSP1137-20121227|9683_1  [L=643]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   3.1e-134  446.7   0.0   4.4e-134  446.2   0.0    1.1  1  TIGR00955 3a01204: pigment precursor permease
    4.4e-95  317.3   0.6    4.1e-65  218.0   0.0    2.0  2  TIGR00956 3a01205: pleiotropic drug resistance family protein
    1.7e-30  104.1   0.0    2.7e-30  103.4   0.0    1.2  1  TIGR02982 heterocyst_DevA: ABC exporter ATP-binding subunit, DevA family
    1.3e-28   97.9   0.0    2.1e-28   97.2   0.0    1.2  1  TIGR03258 PhnT: 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT
    4.7e-27   92.9   0.0    6.6e-27   92.4   0.0    1.1  1  TIGR02857 CydD: thiol reductant ABC exporter, CydD subunit
    5.4e-27   92.6   0.0    8.1e-27   92.0   0.0    1.1  1  TIGR03864 PQQ_ABC_ATP: ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system
    9.6e-26   88.3   0.0    1.4e-25   87.7   0.0    1.2  1  TIGR02868 CydC: thiol reductant ABC exporter, CydC subunit
    1.2e-25   87.9   0.0      2e-25   87.2   0.0    1.2  1  TIGR01166 cbiO: cobalt ABC transporter, ATP-binding protein
    4.4e-25   86.5   0.0    6.5e-25   85.9   0.0    1.2  1  TIGR02673 FtsE: cell division ATP-binding protein FtsE
    4.7e-25   85.8   0.0    6.7e-25   85.3   0.0    1.1  1  TIGR03375 type_I_sec_LssB: type I secretion system ATPase
    9.1e-25   85.4   0.0    1.4e-24   84.7   0.0    1.2  1  TIGR00968 3a0106s01: sulfate ABC transporter, ATP-binding protein
    1.1e-24   85.1   0.0    1.7e-24   84.5   0.0    1.1  1  TIGR01188 drrA: daunorubicin resistance ABC transporter, ATP-binding protein
    8.2e-24   82.3   0.0    1.2e-23   81.8   0.0    1.1  1  TIGR03265 PhnT2: putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein
    1.6e-23   81.2   0.0    2.1e-23   80.7   0.0    1.1  1  TIGR01187 potA: polyamine ABC transporter, ATP-binding protein
    2.6e-23   80.4   0.0    4.1e-23   79.8   0.0    1.2  1  TIGR03608 L_ocin_972_ABC: putative bacteriocin export ABC transporter, lactococcin 972 group
    1.5e-22   78.1   0.1    2.3e-22   77.5   0.1    1.1  1  TIGR02142 modC_ABC: molybdate ABC transporter, ATP-binding protein
    1.7e-22   78.0   0.0    2.4e-22   77.5   0.0    1.2  1  TIGR01184 ntrCD: nitrate ABC transporter, ATP-binding proteins C and D
    6.7e-22   75.9   0.0    9.9e-22   75.4   0.0    1.2  1  TIGR02211 LolD_lipo_ex: lipoprotein releasing system, ATP-binding protein
    2.5e-21   74.1   0.0    3.9e-21   73.5   0.0    1.2  1  TIGR01189 ccmA: heme ABC exporter, ATP-binding protein CcmA
    2.7e-21   74.0   0.0    4.5e-21   73.3   0.0    1.2  1  TIGR01277 thiQ: thiamine ABC transporter, ATP-binding protein
    7.2e-21   72.8   0.0    1.1e-20   72.1   0.0    1.2  1  TIGR00960 3a0501s02: type II secretory pathway family protein
    1.3e-20   71.3   0.0    1.9e-20   70.7   0.0    1.2  1  TIGR01842 type_I_sec_PrtD: type I secretion system ATPase
    5.5e-20   69.5   0.0    1.1e-19   68.5   0.0    1.4  1  TIGR03873 F420-0_ABC_ATP: proposed F420-0 ABC transporter, ATP-binding protein
    7.7e-20   68.9   0.0    1.6e-19   67.8   0.0    1.4  1  TIGR02204 MsbA_rel: ABC transporter, permease/ATP-binding protein
    9.4e-20   68.9   0.0    1.6e-19   68.1   0.0    1.2  1  TIGR02315 ABC_phnC: phosphonate ABC transporter, ATP-binding protein
    5.2e-18   63.3   0.0    8.5e-18   62.6   0.0    1.2  1  TIGR02769 nickel_nikE: nickel import ATP-binding protein NikE
    5.3e-18   63.1   0.0    7.6e-18   62.6   0.0    1.1  1  TIGR01186 proV: glycine betaine/L-proline transport ATP binding subunit
    3.9e-17   59.6   0.1    9.7e-17   58.3   0.0    1.6  2  TIGR00958 3a01208: antigen peptide transporter 2
    4.4e-17   60.1   0.0    7.9e-17   59.3   0.0    1.3  1  TIGR03410 urea_trans_UrtE: urea ABC transporter, ATP-binding protein UrtE
    7.3e-17   59.6   0.0      1e-16   59.1   0.0    1.1  1  TIGR03522 GldA_ABC_ATP: gliding motility-associated ABC transporter ATP-binding subunit GldA
    1.7e-16   57.7   0.0    3.6e-16   56.6   0.0    1.5  1  TIGR03797 NHLM_micro_ABC2: NHLM bacteriocin system ABC transporter, ATP-binding protein
    2.6e-16   57.1   0.0    3.8e-16   56.5   0.0    1.2  1  TIGR02203 MsbA_lipidA: lipid A export permease/ATP-binding protein MsbA
    3.2e-16   56.6   0.0    4.8e-16   56.0   0.0    1.2  1  TIGR01846 type_I_sec_HlyB: type I secretion system ATPase
    3.8e-16   57.0   0.0    7.7e-16   56.0   0.0    1.4  1  TIGR00972 3a0107s01c2: phosphate ABC transporter, ATP-binding protein
    4.7e-16   56.8   0.0    9.1e-16   55.8   0.0    1.4  1  TIGR01978 sufC: FeS assembly ATPase SufC
    5.4e-16   56.8   0.0      9e-16   56.1   0.0    1.2  1  TIGR03411 urea_trans_UrtD: urea ABC transporter, ATP-binding protein UrtD
    4.4e-15   53.8   0.1    1.2e-14   52.4   0.1    1.7  1  TIGR03771 anch_rpt_ABC: anchored repeat-type ABC transporter, ATP-binding subunit
      1e-14   52.2   0.0    1.5e-14   51.6   0.0    1.1  1  TIGR02314 ABC_MetN: D-methionine ABC transporter, ATP-binding protein
    1.3e-14   52.2   0.0    2.1e-14   51.5   0.0    1.2  1  TIGR03740 galliderm_ABC: lantibiotic protection ABC transporter, ATP-binding subunit
    1.8e-14   51.6   0.0    3.2e-14   50.8   0.0    1.3  1  TIGR02324 CP_lyasePhnL: phosphonate C-P lyase system protein PhnL
    1.8e-14   51.4   0.1    7.6e-13   46.1   0.0    2.1  1  TIGR03005 ectoine_ehuA: ectoine/hydroxyectoine ABC transporter, ATP-binding protein EhuA
    1.5e-13   48.3   0.0      3e-13   47.3   0.0    1.3  1  TIGR03415 ABC_choXWV_ATP: choline ABC transporter, ATP-binding protein
      2e-13   47.5   0.0    5.1e-13   46.2   0.0    1.4  1  TIGR03269 met_CoM_red_A2: methyl coenzyme M reductase system, component A2
    4.9e-13   46.0   0.0      8e-13   45.3   0.0    1.2  1  TIGR03796 NHLM_micro_ABC1: NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein
    5.4e-13   46.7   0.0    8.4e-13   46.0   0.0    1.2  1  TIGR02770 nickel_nikD: nickel import ATP-binding protein NikD
    7.5e-13   44.1   0.0    1.1e-12   43.5   0.0    1.1  1  TIGR01257 rim_protein: rim ABC transporter
    1.1e-12   45.8   0.0    1.3e-11   42.3   0.0    2.1  1  TIGR02323 CP_lyasePhnK: phosphonate C-P lyase system protein PhnK
    1.3e-12   45.2   0.0      2e-12   44.6   0.0    1.2  1  TIGR01288 nodI: nodulation ABC transporter NodI
    1.9e-12   44.2   0.0      2e-06   24.4   0.0    2.1  2  TIGR02633 xylG: D-xylose ABC transporter, ATP-binding protein
    1.9e-12   44.3   0.0    3.6e-08   30.3   0.0    2.1  2  TIGR03719 ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family
    1.1e-11   41.9   0.0    1.8e-11   41.2   0.0    1.2  1  TIGR01192 chvA: glucan exporter ATP-binding protein
    1.2e-07   28.5   0.0      2e-07   27.8   0.0    1.2  1  TIGR01193 bacteriocin_ABC: ABC-type bacteriocin transporter
    4.1e-05   20.0   0.0    5.7e-05   19.5   0.0    1.1  1  TIGR00954 3a01203: peroxysomal long chain fatty acyl transporter
    0.00011   17.6   0.0    0.00035   15.9   0.0    1.7  1  TIGR01271 CFTR_protein: cystic fibrosis transmembrane conductor regulator (CFTR)
     0.0027   12.9   0.0     0.0045   12.2   0.0    1.2  1  TIGR00957 MRP_assoc_pro: multi drug resistance-associated protein (MRP)
  ------ inclusion threshold ------
      0.052    9.9   0.0      0.085    9.2   0.0    1.3  1  TIGR00368 TIGR00368: Mg chelatase-like protein


Domain annotation for each model (and alignments):
>> TIGR00955  3a01204: pigment precursor permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  446.2   0.0    6e-136  4.4e-134      24     615 ..      36     641 ..      18     642 .. 0.86

  Alignments for each domain:
  == domain 1    score: 446.2 bits;  conditional E-value: 6e-136
   TIGR00955  24 vkrleealarkk...pekellknvsGvaksGellAvlGsSGaGKtTLlnalafrse.kglkvsgd.vllnGekveakemraisayvqqddlfiptltvrehLmfsahlrlkrrltkkekrerveevleelgLrkcadtrigvpgrvkglSgGerkRlalaselltdPilLfcDEPTsGLDsfsaasvvkvLkklaqkgk.tviltiHQPsselfelfdkiillaeGrvvylGspeeavkffselg.lpcPenynpadFvlkvlavepgseeesretiekicdaeaksklsreveentnlasgke...............kklvkdseneekik............ykasfltqflvllkRsllsvlrdplllkvrllqvivvavligliylgqeltqkgvqningalFllltemtFqtvfavinvftaelpvflREtasglYrlsaYylaktlaelPlliilpllflsivYwmiglksgalkfltalllvvlvanvatsfglllscafestslalsvappvvipfllfgGfflnvdsvPvyfkwlsylSwfrYanEallinqwsdvkeie..lleantteecpssgeeiLeelsfeaadlaldllilvvlilvfrllaylalririrr 615
                 +++l    ++kk   ++k +l++vsG++++Ge lA++G+SG+GKt Ll +la r + kg   +g+  +l G +++ k + +++++v qddl++  ltv+e++ f a+lrl+++l  +e+ +rve+ l++l+L++cadt ig++ + +g+SgGerkR a+++el++ P++Lf+DEPTsGLD++sa s+   L+k a+  + +v+ ++HQP s++f+lfd+++ll++G +vy Gs+  av++++e+  l+ P + npad++++++    ++     +  +   ++ ak++   +  + ++ ++g++               +                          ++s + qf+vll Rs  +++ d    k    q+++vav+ +l+++g +     + +++g+lF++  +  F+++  v+ +f+ e++++lRE + g Yr+  Y+lak+ ++   +++lp+++++i+Y ++gl+++a +f++ l+l + +  +++s+gl++s a+ +  la  +  ++v++++lfgGf++ v+++P ++ w++ylS++++++ +++in++ + +         +  e cp +g  + +++      + l++ +l+++ ++ r+l+y+alr++i++
  MMETSP1137-20121227|9683_1  36 KSFLGLPSCNKKessKRKLVLNGVSGAIEPGETLALMGPSGSGKTSLLCVLAGRLPpKGRLEEGSlLTLGGVQLT-KPFYRRCGFVFQDDLLLAALTVKETIEFAAKLRLPQSLGDEERTRRVEQTLTQLQLNDCADTAIGSEKQ-RGVSGGERKRCAVGVELVSRPPILFLDEPTSGLDAASALSLALSLRKYAKDNEmIVLSSVHQPRSNIFSLFDRLLLLSKGSTVYYGSVAGAVPYIEEHAkLRLPPQTNPADWLIDLIDARSSELL---DAWRGFSEQSAKGSGIADGSAPFSGSHGSNgasehrvtkatgtrtA------------GagargpasantgPTTSSWFQFRVLLARSAKQQRGDV-YNKTNCFQILAVAVIAALLWSGDS----NISDRKGVLFFVNIQQAFNAQNTVLRLFPRERSLMLRERRCGSYRMLPYFLAKSASDSVSIFVLPVIYAIIIYFSVGLRREAGAFFVYLALSLSTVFAGQSIGLIISLAVPDFALANCISFVAVLLIMLFGGFYVGVERIPEWLAWFRYLSFVFWGYSGMIINEFGNNEIPCdqASPGEYGEACPIDGDLVVKSMGYGDLSVGLCVGMLLLISFSMRFLGYVALRFNINF 641
                 4455555566666678999***********************************8625655666669999**999.788899***********************************************************7775.*************************************************9776155568************************************997549**************9976655443...3444444444444444444444443444332222222233334331............03333454544555678889*********99887776.778999**************9965....6999*****************************************************************************************************************************************************************987643224333455678***************9999***********************99985 PP

>> TIGR00956  3a01205: pleiotropic drug resistance family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  218.0   0.0   5.6e-67   4.1e-65     772    1025 ..      49     300 ..      40     340 .. 0.92
   2 !   95.7   1.6   4.6e-30   3.4e-28     397     624 ..     365     588 ..     333     599 .. 0.92

  Alignments for each domain:
  == domain 1    score: 218.0 bits;  conditional E-value: 5.6e-67
   TIGR00956  772 kkekrvlLdevdGwvkPGkltALmGasGAGkttLlnvLaeRv.ttGvitegdrlv.ngrkldssFqRsiGYvqqqDlHletstvreaLrfsAylRqpkevskkekneyveevikllelesyadAvvGvpGe.GLnveqRkrltigveLvAkPklllFlDePtsGLDsqtawsivkllrkladaGqa.ilCtiHqPsailleeFDrLLllqkGGktvYfGdlGensktlieYFekhGaekcpeeanPAewmLevigaaa 1025
                  +++++ +L+ v+G ++PG+  ALmG sG Gkt Ll vLa+R+   G ++eg  l  +g +l + F R+ G+v q+Dl l+  tv+e+++f+A lR p+++ ++e+++ ve+ +  l+l++ ad  +G   + G++   Rkr ++gveLv +P  +lFlDePtsGLD+ +a s+   lrk a+     +l  +HqP   ++  FDrLLll kG  tvY+G +       + Y e+h   ++p+++nPA+w+++ i a +
  MMETSP1137-20121227|9683_1   49 SSKRKLVLNGVSGAIEPGETLALMGPSGSGKTSLLCVLAGRLpPKGRLEEGSLLTlGGVQLTKPFYRRCGFVFQDDLLLAALTVKETIEFAAKLRLPQSLGDEERTRRVEQTLTQLQLNDCADTAIGSEKQrGVSGGERKRCAVGVELVSRP-PILFLDEPTSGLDAASALSLALSLRKYAKDNEMiVLSSVHQPRSNIFSLFDRLLLLSKG-STVYYGSVA----GAVPYIEEHAKLRLPPQTNPADWLIDLIDARS 300 
                  4556778**********************************9458*******9964889********************************************************************98888********************.99*************************98776516789********************9.9*****875....5689***********************98754 PP

  == domain 2    score: 95.7 bits;  conditional E-value: 4.6e-30
   TIGR00956 397 tvsfsqqvkyilaRellrlkgdasvtlikvvgniimalilssvfynlekntsdfyvrggalffallfnafsslleiasly.earpivekhrkyalyhPsadalasilselPvkliesvvfniilyflvnlrreagrFffylLilflatlvmshlFrsigavtktlseAmtlaallllalslytgfviprkeilkWskWiayvnPlayafesllvnefharefecsqlvP 624
                 t s + q++++laR+ ++ +gd ++  ++ +++++ a+i++ ++    + +s++  r g+lff  + +af++   ++ l+  +r+++ ++r+   y+     la   s+    ++  v++ ii+yf v+lrreag+Ff+yl ++++++++  ++  +i+ ++  ++ A+ ++ + +l+++l++gf +  ++i++W+ W +y++ + + +  +++nef ++e++c+q  P
  MMETSP1137-20121227|9683_1 365 TTSSWFQFRVLLARSAKQQRGD-VYNKTNCFQILAVAVIAALLW----SGDSNISDRKGVLFFVNIQQAFNAQNTVLRLFpRERSLMLRERRCGSYRMLPYFLAKSASDSVSIFVLPVIYAIIIYFSVGLRREAGAFFVYLALSLSTVFAGQSIGLIISLAVPDFALANCISFVAVLLIMLFGGFYVGVERIPEWLAWFRYLSFVFWGYSGMIINEFGNNEIPCDQASP 588
                 668889*********9998888.58899*********9998765....45677778***********************94579*************************9999****************************************************************************************************************9877 PP

>> TIGR02982  heterocyst_DevA: ABC exporter ATP-binding subunit, DevA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  103.4   0.0   3.7e-32   2.7e-30      14     218 ..      49     260 ..      45     262 .. 0.87

  Alignments for each domain:
  == domain 1    score: 103.4 bits;  conditional E-value: 3.7e-32
   TIGR02982  14 gelrkqvlfdinleiepgeiviltGpsGsGkttlltligglrsvqeGelkvlgkelkgasekel.vqvrrkiGyifqahnllesltaeqnvrmalelk..eklsakeakakaeelleavglee.....rldykpedlsgGqkqrvaiaralvarPklvladePtaaldkksgrevvellqklareqgttillvthdnr..ildvadrivkmedGk 218
                  ++rk vl+ ++  iepge + l GpsGsGkt ll +++g r   +G l+    +l  +   +l +   r+ G++fq   ll +lt+++ +++a++l+  ++l  +e++ ++e+ l+++ l++       + k + +sgG ++r a+   lv+rP +++ dePt+ ld+ s+ ++   l+k a+++ + +l   h +r  i+ + dr++ + +G+
  MMETSP1137-20121227|9683_1  49 SSKRKLVLNGVSGAIEPGETLALMGPSGSGKTSLLCVLAG-RLPPKGRLEE--GSLLTLGGVQLtKPFYRRCGFVFQDDLLLAALTVKETIEFAAKLRlpQSLGDEERTRRVEQTLTQLQLNDcadtaIGSEKQRGVSGGERKRCAVGVELVSRPPILFLDEPTSGLDAASALSLALSLRKYAKDNEMIVLSSVHQPRsnIFSLFDRLLLLSKGS 260
                 578999******************************9987.7888888874..344444444440458899**********************998763377999999***************6655333567889***********************************************************998779********999985 PP

>> TIGR03258  PhnT: 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.2   0.0   2.8e-30   2.1e-28      21     223 ..      53     266 ..      46     272 .. 0.85

  Alignments for each domain:
  == domain 1    score: 97.2 bits;  conditional E-value: 2.8e-30
   TIGR03258  21 rvvlddlsleieaGellallGksGsGkttllravaGfvkadG....Grll.vadrdlthlppykrnlallvqnyalfphlkveenvafGlra...rkqskaliaervadalklvqlsdaaar.....lpaqlsGGqqqrvalaralvvrpdvllldeplsaldaqlrasvveelkalhrelpeltvlyvthdrdealvladkillmkeGslialGe 223
                 + vl+ +s  ie+Ge lal+G+sGsGkt+ll ++aG + ++G    G ll +++ +lt+  p+ r  ++++q+  l+  l+v+e + f  +    +   + + ++rv ++l  +ql+d a           +sGG ++r a+   lv rp +l+ldep s lda    s+   l++  ++   + +  v   r++ + l d++ll+ +Gs + +G 
  MMETSP1137-20121227|9683_1  53 KLVLNGVSGAIEPGETLALMGPSGSGKTSLLCVLAGRLPPKGrleeGSLLtLGGVQLTK--PFYRRCGFVFQDDLLLAALTVKETIEFAAKLrlpQSLGDEERTRRVEQTLTQLQLNDCADTaigseKQRGVSGGERKRCAVGVELVSRPPILFLDEPTSGLDAASALSLALSLRKYAKDNEMIVLSSVHQPRSNIFSLFDRLLLLSKGSTVYYGS 266
                 789*************************************9999987654278888875..888999*******************9986651124556677899***********9987541111145669******************************************9988776555555566679999**************999986 PP

>> TIGR02857  CydD: thiol reductant ABC exporter, CydD subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.4   0.0     9e-29   6.6e-27     333     514 ..      51     237 ..       3     255 .. 0.78

  Alignments for each domain:
  == domain 1    score: 92.4 bits;  conditional E-value: 9e-29
   TIGR02857 333 grkpalkevsltvepgelvalvGaSGaGKstllklllgfvepteGailvnga..elaeld.adswrkqiawvpQkPllfeg.tvaenirlarkdaseaevkealeragldelvk..alpqgleteiGe.rgagLSgGqrqRlaLArallrdapllllDEPtahLDaeteaevlealrelaegrtvllva 514
                  rk +l++vs ++epge++al+G+SG+GK++ll +l+g ++p +G+++ +g+  +l  ++ ++ +++++++v Q  ll+++ tv+e i++a k    + + +  +   +++ +   +l++  +t iG+ + +g+SgG+r+R a+   l++  p+l lDEPt+ LDa+++  +  +lr++a+ + +++ +
  MMETSP1137-20121227|9683_1  51 KRKLVLNGVSGAIEPGETLALMGPSGSGKTSLLCVLAGRLPP-KGRLE-EGSllTLGGVQlTKPFYRRCGFVFQDDLLLAAlTVKETIEFAAKLRLPQSLGDEERTRRVEQTLTqlQLNDCADTAIGSeKQRGVSGGERKRCAVGVELVSRPPILFLDEPTSGLDAASALSLALSLRKYAKDNEMIVLS 237
                 3447999*********************************65.56665.333123333331346899********9887655********99999888876555555554444411677899*****625789***********************************************666555543 PP

>> TIGR03864  PQQ_ABC_ATP: ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.0   0.0   1.1e-28   8.1e-27      14     217 ..      53     268 ..      45     279 .. 0.85

  Alignments for each domain:
  == domain 1    score: 92.0 bits;  conditional E-value: 1.1e-28
   TIGR03864  14 rralddvsltvakgefvaLLGpnGaGkstLfslltrLyeak....egei.kvaGldlrrapkealarlGvvfqqstlDldlsveqnlryhaaL...hGlsraeaeerieealarlglaerae.....ekvreLnGGhrrrveiarallhePklLLlDeatvGLDiesraalveevrelvreeglsvLWathl..vdeveaedrlvvlhkGkvlaqGaaa 217
                 + +l++vs ++++ge  aL+Gp G+Gk+ L+ +l++ +  k    eg++ ++ G++l+   k   +r G vfq+  l   l+v++ +++ a+L   + l+ +e ++r+e++l++l+l++ a+     ek r ++GG+r+r  +   l+ +P +L lDe+t GLD++s  +l  ++r+ ++++++ vL + h    +  +  drl++l kG  +  G++a
  MMETSP1137-20121227|9683_1  53 KLVLNGVSGAIEPGETLALMGPSGSGKTSLLCVLAGRLPPKgrleEGSLlTLGGVQLT---KPFYRRCGFVFQDDLLLAALTVKETIEFAAKLrlpQSLGDEERTRRVEQTLTQLQLNDCADtaigsEKQRGVSGGERKRCAVGVELVSRPPILFLDEPTSGLDAASALSLALSLRKYAKDNEMIVLSSVHQprSNIFSLFDRLLLLSKGSTVYYGSVA 268
                 6789******************************987654444446665145555554...45789**************************95555899******************98872222256799***********************************************************8323456788*********999888765 PP

>> TIGR02868  CydC: thiol reductant ABC exporter, CydC subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.7   0.0   1.9e-27   1.4e-25     348     525 ..      52     235 ..      26     242 .. 0.82

  Alignments for each domain:
  == domain 1    score: 87.7 bits;  conditional E-value: 1.9e-27
   TIGR02868 348 ee.vlkgvsldlepGervavvGasGaGKstLlallaglldpl....kGe.vtldgvsvaslsesevrrvvsvlaqdaHlFdttvreNlrlarpdatdeellaaLervgLadwlra..LpdGldtklgeggar.lSGGerqRlalARaLladapvllLDEPtehLDaeteeelledLlaaeegrtvvl 525
                  + vl+gvs  +epGe +a++G+sG+GK+ Ll +lag l+p+    +G+ +tl gv++++      rr+  v+++d  l + tv+e + +a++    + l +  +  + ++ l +  L+d +dt +g++ +r +SGGer+R a+   L++  p+l LDEPt +LDa+ + +l   L++  +++ +++
  MMETSP1137-20121227|9683_1  52 RKlVLNGVSGAIEPGETLALMGPSGSGKTSLLCVLAGRLPPKgrleEGSlLTLGGVQLTK---PFYRRCGFVFQDDLLLAALTVKETIEFAAKLRLPQSLGDEERTRRVEQTLTQlqLNDCADTAIGSEKQRgVSGGERKRCAVGVELVSRPPILFLDEPTSGLDAASALSLALSLRKYAKDNEMIV 235
                 445*************************************96333356625677766655...5566777777777777788*************999999999999999999875579*******9766544****************************************99995444433322 PP

>> TIGR01166  cbiO: cobalt ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.2   0.0   2.8e-27     2e-25       6     184 ..      54     238 ..      50     241 .. 0.86

  Alignments for each domain:
  == domain 1    score: 87.2 bits;  conditional E-value: 2.8e-27
   TIGR01166   6 evlkglnlavergevlallGanGaGkstlllhlnGllrPksGkvlldGeeldysrkglle.lrkkvalvlqdpddqlfaa.dvdedvafgp.lnl..Glseaeverrvrealaavdisgleerpt.....hllsgGekkrvaiagavalrpdvllldePtagldpaGaeqlleilrklreeGktvvist 184
                  vl+g++ a+e ge+lal+G+ G+Gk+ ll  l+G l P +G++  +G+ l  +  +l++   ++ ++v+qd  d l+aa +v+e + f+  l l   l ++e +rrv++ l+++++++ ++ ++     + +sgGe+kr a+   ++ rp +l+ldePt+gld+a a  l+  lrk  ++ + +v+s+
  MMETSP1137-20121227|9683_1  54 LVLNGVSGAIEPGETLALMGPSGSGKTSLLCVLAGRLPP-KGRL-EEGSLLTLGGVQLTKpFYRRCGFVFQD--DLLLAAlTVKETIEFAAkLRLpqSLGDEERTRRVEQTLTQLQLNDCADTAIgsekqRGVSGGERKRCAVGVELVSRPPILFLDEPTSGLDAASALSLALSLRKYAKDNEMIVLSS 238
                 59***********************************77.5886.58999****99999846799******7..55555439*******852344226779999***************99876522222679**********************************************9999999986 PP

>> TIGR02673  FtsE: cell division ATP-binding protein FtsE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.9   0.0   8.9e-27   6.5e-25      15     196 ..      53     241 ..      45     260 .. 0.80

  Alignments for each domain:
  == domain 1    score: 85.9 bits;  conditional E-value: 8.9e-27
   TIGR02673  15 veaLkdvslkiekgeflfltGasGaGkttllklllgaekpsrGevevagedvarlrerelpl.lRrkigvvfqDfkllkdrtvlenvalalevr...gkkeeeiqkrveevlelvgledkakal.....peelsgGeqqRvaiaRaivnkPelllaDePtGnlDdelseri.ldllkelnkrGttvivathd 196
                   +L+ vs  ie+ge l l+G+sG+Gkt+ll +l g++ p +G+  ++  ++ +l + +l++ + r+ g vfqD  ll + tv e + +a ++r      +ee ++rve++l+++ l+d a++       + +sgGe++R a+   +v++P++l  DePt  lD++ + ++ l+l k ++++ + v+ + h+
  MMETSP1137-20121227|9683_1  53 KLVLNGVSGAIEPGETLALMGPSGSGKTSLLCVLAGRLPP-KGR--LEEGSLLTLGGVQLTKpFYRRCGFVFQDDLLLAALTVKETIEFAAKLRlpqSLGDEERTRRVEQTLTQLQLNDCADTAigsekQRGVSGGERKRCAVGVELVSRPPILFLDEPTSGLDAASALSLaLSLRKYAKDNEMIVLSSVHQ 241
                 568999**************************99998866.675..566677777777775448899*******************9888766511145578999**************99875222115669**********************************9998344545555566666666776 PP

>> TIGR03375  type_I_sec_LssB: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.3   0.0   9.1e-27   6.7e-25     478     684 ..      51     266 ..      21     274 .. 0.82

  Alignments for each domain:
  == domain 1    score: 85.3 bits;  conditional E-value: 9.1e-27
   TIGR03375 478 eekaaLknvslkikpGekvaiiGriGsGKstllklllglyept....eGsvl.ldgvdirqidpadlrrnigyvpqdvtLfyG.tlrdNialgapaaedeellraaelaGvtefvkk..hpkGldlqig.erGesLSgGQrqavalaRallkdppillLDEPtsalDnsseekllerLkelladkTlvlvt..H..rtslLelvdriivldkGrivadGp 684
                 ++k +L+ vs  i+pGe +a++G  GsGK++ll +l+g + p+    eGs+l l gv+++   +    r+ g+v qd  L+++ t+++ i+++a+    ++l    ++  v++ + +    +  d+ ig e+ +++SgG r+  a+   l++ ppil+LDEPts lD++s  +l  +L+++++d+ +++ +  H  r+++ +l dr+++l+kG  v  G+
  MMETSP1137-20121227|9683_1  51 KRKLVLNGVSGAIEPGETLALMGPSGSGKTSLLCVLAGRLPPKgrleEGSLLtLGGVQLT---KP-FYRRCGFVFQDDLLLAAlTVKETIEFAAKLRLPQSLGDEERTRRVEQTLTQlqLNDCADTAIGsEKQRGVSGGERKRCAVGVELVSRPPILFLDEPTSGLDAASALSLALSLRKYAKDNEMIVLSsvHqpRSNIFSLFDRLLLLSKGSTVYYGS 266
                 567799********************************9988433337876426666554...33.4566899999999988769*********9888888877777777776655411567899999748899*************************************************9888886534655789***************999986 PP

>> TIGR00968  3a0106s01: sulfate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.7   0.0   1.9e-26   1.4e-24      13     214 ..      53     266 ..      44     272 .. 0.81

  Alignments for each domain:
  == domain 1    score: 84.7 bits;  conditional E-value: 1.9e-26
   TIGR00968  13 fqalddvdlevktGslvallGpsGsGkstllrviaGlekp....dsGri.lleGrdvtrvkvrdreiGfvfqhyalfkhltvrdniafGleir...kkdkakikakveellelvqleklgdr.....ypsqlsGGqrqrvalaralavepqvllldepfgaldakvrkelrawlrklhdevkvttvfvthd.qeealevadrivvlekGkieqvgs 214
                   +l+ v+  ++ G+  al+GpsGsGk++ll v+aG   p    ++G + +l G  v  +k   r+ Gfvfq+  l+  ltv++ i f  ++r       ++  ++ve+ l  +ql++ +d          +sGG+r+r a+   l   p +l+ldep + lda     l   lrk  ++ ++  +   h+ +++   + dr+ +l+kG     gs
  MMETSP1137-20121227|9683_1  53 KLVLNGVSGAIEPGETLALMGPSGSGKTSLLCVLAGRLPPkgrlEEGSLlTLGG--VQLTKPFYRRCGFVFQDDLLLAALTVKETIEFAAKLRlpqSLGDEERTRRVEQTLTQLQLNDCADTaigseKQRGVSGGERKRCAVGVELVSRPPILFLDEPTSGLDAASALSLALSLRKYAKDNEMIVLSSVHQpRSNIFSLFDRLLLLSKGSTVYYGS 266
                 568999999***************************654311114555413444..4455677899**************************94433345677889**********9877652111145669********************************************998887777666665278899***********98776665 PP

>> TIGR01188  drrA: daunorubicin resistance ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.5   0.0   2.3e-26   1.7e-24       9     209 ..      56     268 ..      51     281 .. 0.85

  Alignments for each domain:
  == domain 1    score: 84.5 bits;  conditional E-value: 2.3e-26
   TIGR01188   9 vdgvnlkveegevfglLGPnGAGKtttikmLttllkPds..GtarvaGyDvvrepdevRrsigvvpqkasvdedLtarenlellgel...yglpkkeaeeraeellelvelkeaadkkv.....ktysgGmrrrlelaasliaqPevlfLDEPtiGLDprtrraiwdlieelkkegvtilltthy..leeadkladrvaiidkGkiiaedtpe 209
                 ++gv+  +e ge ++l+GP G GKt ++ +L++ l+P++   ++ +     v+  +   r+ g v+q+  +  +Lt +e +e+ ++l   + l  +e+ +r+e+ l +++l + ad  +     +  sgG r+r  +++ l+++P +lfLDEPt+GLD+ ++ ++   +++  k++  i+l++ +    ++ +l dr+ +++kG  +  +++ 
  MMETSP1137-20121227|9683_1  56 LNGVSGAIEPGETLALMGPSGSGKTSLLCVLAGRLPPKGrlEEGSLLTLGGVQLTKPFYRRCGFVFQDDLLLAALTVKETIEFAAKLrlpQSLGDEERTRRVEQTLTQLQLNDCADTAIgsekqRGVSGGERKRCAVGVELVSRPPILFLDEPTSGLDAASALSLALSLRKYAKDNEMIVLSSVHqpRSNIFSLFDRLLLLSKGSTVYYGSVA 268
                 6789999******************************753323445555557777778999*************************9555688999999***************9987722222579********************************************999977777776440145667899*********999998876 PP

>> TIGR03265  PhnT2: putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.8   0.0   1.6e-25   1.2e-23      16     217 ..      52     265 ..      36     269 .. 0.82

  Alignments for each domain:
  == domain 1    score: 81.8 bits;  conditional E-value: 1.6e-25
   TIGR03265  16 aftalkdislsvkkgelvclLGPsGCGkttLLriiaGL....ekqdaGaillggrditrlppqkrdyGivfqsYaLfPnltvaeniayGLk...nkklkreevaerveelLelvglsgseekyPg...q..lsGGqqqrvaLaralalsPglLLLDePlsaLDakvrekLreelkklqrklgvttimvthd.qeealslaDrivvmnkgkieqvg 217
                 +  +l+ +s +++ ge ++l+GPsG Gkt+LL ++aG      + ++G++l+ g  +  + p  r  G+vfq   L   ltv+e i++  k    + l+ ee+++rve+ L  ++l++ ++   g   q  +sGG ++r a++  l+ +P +L+LDeP s LDa    +L   l+k  +  ++  +   h+ + + +sl Dr+  + kg+   +g
  MMETSP1137-20121227|9683_1  52 RKLVLNGVSGAIEPGETLALMGPSGSGKTSLLCVLAGRlppkGRLEEGSLLTLGG-VQLTKPFYRRCGFVFQDDLLLAALTVKETIEFAAKlrlPQSLGDEERTRRVEQTLTQLQLNDCADTAIGsekQrgVSGGERKRCAVGVELVSRPPILFLDEPTSGLDAASALSLALSLRKYAKDNEMIVLSSVHQpRSNIFSLFDRLLLLSKGSTVYYG 265
                 4567999******************************523324567787765543.4455688999**********************9772234678899***********99999987654331222449**********************************************9999999988887356788999999999999877666 PP

>> TIGR01187  potA: polyamine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.7   0.0   2.9e-25   2.1e-23       1     180 [.      71     262 ..      71     269 .. 0.85

  Alignments for each domain:
  == domain 1    score: 80.7 bits;  conditional E-value: 2.9e-25
   TIGR01187   1 lLGpsGsGkttlLrllaGl....eeldsGkil.ldgedvtevpaekrsvnvvfqsyaLfPhmtveenvafgLkm...rkvpkaeikervkeaLelvqleefak.....rkpsqlsGGqrqrvalaravvkkPkiLLlDeplsaLDkkLrdqmqlelkalqeklGitvvlvthD.qeealtmsdriavlrkGkia 180
                 l+GpsGsGkt lL +laG      +l++G++l l+g+++t   +  r  + vfq+  L   +tv+e + f+ k+   + ++ +e++ rv++ L+  ql++ a+      k   +sGG r+r a+   +v +P iL+lDep s LD      + l l++  +   + v+   h  +++ +++ dr+ +l+kG  +
  MMETSP1137-20121227|9683_1  71 LMGPSGSGKTSLLCVLAGRlppkGRLEEGSLLtLGGVQLT--KPFYRRCGFVFQDDLLLAALTVKETIEFAAKLrlpQSLGDEERTRRVEQTLTQLQLNDCADtaigsEKQRGVSGGERKRCAVGVELVSRPPILFLDEPTSGLDAASALSLALSLRKYAKDNEMIVLSSVHQpRSNIFSLFDRLLLLSKGSTV 262
                 79****************6233357889997537777766..588899**********************988733457899****************998762222157788************************************************99999999888724567799*********9876 PP

>> TIGR03608  L_ocin_972_ABC: putative bacteriocin export ABC transporter, lactococcin 972 group
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.8   0.0   5.5e-25   4.1e-23       7     191 ..      49     238 ..      44     255 .. 0.84

  Alignments for each domain:
  == domain 1    score: 79.8 bits;  conditional E-value: 5.5e-25
   TIGR03608   7 kfkdkeilkklslkiekGelvaivGesGsGKstlLnilgllekkdsgkvilegkekaklkskkaskllreklgylFqnfaLlenetveenlelalkl...kkkskkekekkkkevlekvglekklkkkiye.....lsgGekqRvalarillkeselilADEPtgsLDkknreevlellkelkeegktiiivt 191
                 + k k +l+ +s  ie Ge++a++G sGsGK+ lL +l+    ++ g+  le+ +  +l   + +k +  + g++Fq+  Ll   tv+e +e a kl   + +  +e++++++++l +++l+ + ++ i +     +sgGe++R a+   l+  +++++ DEPt+ LD+ +   +   l++ ++++++i++  
  MMETSP1137-20121227|9683_1  49 SSKRKLVLNGVSGAIEPGETLALMGPSGSGKTSLLCVLAGRLPPK-GR--LEEGSLLTLGGVQLTKPFYRRCGFVFQDDLLLAALTVKETIEFAAKLrlpQSLGDEERTRRVEQTLTQLQLNDCADTAIGSekqrgVSGGERKRCAVGVELVSRPPILFLDEPTSGLDAASALSLALSLRKYAKDNEMIVLSS 238
                 567789********************************9765544.55..566666889999998888889*********************998872223455678899999********9998876643233349************************************99999999999999988753 PP

>> TIGR02142  modC_ABC: molybdate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.5   0.1   3.2e-24   2.3e-22      22     215 ..      65     266 ..      53     283 .. 0.83

  Alignments for each domain:
  == domain 1    score: 77.5 bits;  conditional E-value: 3.2e-24
   TIGR02142  22 gkgvtalFGrsGsGktslirliaGLtrpdegeivldgevlqdsrkkiilppekRrvgyvFqeArLFpHlsvrenLrYGlkrara.....eerriseekvielLgiehLleR.....lpgkLsGGekqRvaigRAlLssPeLLlmDePLaaLDekrkkeilPyLerlsaelkiPilyvsHsl.devarladrvvvledGrvkaagk 215
                   +  al G sGsGktsl+ ++aG + p +g+++ +g +l+ +  +++  p  Rr g+vFq+  L + l+v+e +++  k   +     eer  + e+ +  L ++   +      + + +sGGe++R a+g  l+s+P +L +DeP + LD  +   +   L++ +++ ++ +l   H+  +++  l dr+++l +G     g+
  MMETSP1137-20121227|9683_1  65 PGETLALMGPSGSGKTSLLCVLAGRL-PPKGRLE-EGSLLTLGGVQLTK-PFYRRCGFVFQDDLLLAALTVKETIEFAAKLRLPqslgdEERTRRVEQTLTQLQLNDCADTaigseKQRGVSGGERKRCAVGVELVSRPPILFLDEPTSGLDAASALSLALSLRKYAKDNEMIVLSSVHQPrSNIFSLFDRLLLLSKGSTVYYGS 266
                 44889*******************76.7799*98.78888888776655.557889*********************98854431111145666778888888888776551111145679******************************************************999987368*************98766665 PP

>> TIGR01184  ntrCD: nitrate ABC transporter, ATP-binding proteins C and D
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.5   0.0   3.3e-24   2.4e-22       2     199 ..      57     267 ..      56     282 .. 0.87

  Alignments for each domain:
  == domain 1    score: 77.5 bits;  conditional E-value: 3.3e-24
   TIGR01184   2 kdvdleikkgefislighsgcgkstllnliaglekpt....sga.vilegkeitepgpdrm.vvfqnysllpwltvrenialavdavlr.dlskserreiveehielvglreaadk.....rpeqlsggmkqrvaiaralsirpklllldepfgaldaltreelqekllkiveearvtvlmvthdvdeall.lsdrvvmltngpaakigei 199
                 ++v+  i+ ge ++l+g sg gk++ll ++ag   p     +g+ ++l g ++t+p   r   vfq+  ll  ltv+e i +a +  l+ +l  +er + ve+++  ++l++ ad      +   +sgg ++r a+   l  rp +l+ldep   lda +  +l   l k ++++++ vl   h+    ++ l dr+++l++g + + g +
  MMETSP1137-20121227|9683_1  57 NGVSGAIEPGETLALMGPSGSGKTSLLCVLAGRLPPKgrleEGSlLTLGGVQLTKPFYRRCgFVFQDDLLLAALTVKETIEFAAKLRLPqSLGDEERTRRVEQTLTQLQLNDCADTaigseKQRGVSGGERKRCAVGVELVSRPPILFLDEPTSGLDAASALSLALSLRKYAKDNEMIVLSSVHQPRSNIFsLFDRLLLLSKGSTVYYGSV 267
                 678889**************************87664233267635799********999757********************9977651578899999***********9999861111144569*******************************************************9999877766599*********99999887 PP

>> TIGR02211  LolD_lipo_ex: lipoprotein releasing system, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.4   0.0   1.3e-23   9.9e-22      12     214 ..      47     256 ..      43     262 .. 0.81

  Alignments for each domain:
  == domain 1    score: 75.4 bits;  conditional E-value: 1.3e-23
   TIGR02211  12 kegkleievlkgvsleiekgelvaivGssGsGkstllhllggldkptsGevllkGkelsklssneraklrnkklGfiyqfhhlladftalenvamPllis...kkskkeakerakellekvglekrin.....kkpselsGGerqrvaiaralvnkPklvladePtgnldkktakkifelllelnkekntallvvthdl..elakkldrvlel 214
                 ke +++  vl+gvs  ie ge++a++G sGsGk+ ll +l+g   p +G+++    +l +l   + +k   ++ Gf++q   lla +t+ e + + + ++   +   +e  +r ++ l +++l++ ++     +k   +sGGer+r a+   lv++P +++ dePt+ ld+++a ++   l++  k++++ +l   h+   ++   +dr+l l
  MMETSP1137-20121227|9683_1  47 KESSKRKLVLNGVSGAIEPGETLALMGPSGSGKTSLLCVLAGR-LPPKGRLE--EGSLLTLGGVQLTKPFYRRCGFVFQDDLLLAALTVKETIEFAAKLRlpqSLGDEERTRRVEQTLTQLQLNDCADtaigsEKQRGVSGGERKRCAVGVELVSRPPILFLDEPTSGLDAASALSLALSLRKYAKDNEMIVLSSVHQPrsNIFSLFDRLLLL 256
                 56677788*********************************95.67889864..557889999*****************************998876551114445677788899999****9987622222456679***********************************999888888888888777777776411355555555555 PP

>> TIGR01189  ccmA: heme ABC exporter, ATP-binding protein CcmA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.5   0.0   5.3e-23   3.9e-21      12     186 ..      52     241 ..      45     249 .. 0.83

  Alignments for each domain:
  == domain 1    score: 73.5 bits;  conditional E-value: 5.3e-23
   TIGR01189  12 ervlleglsfelaaGealvveGpnGiGKttLLRilaGLlkp....esGevelndkelaeqrdelaeellylgHldglKaeLsalEnLkfyaallq......seqk.tveealekvgLsgledlpvaq.....LsAGqkrRlalarLllskaplWiLDEPttalDkegvellaellaaHlargGivllat.hq 186
                  + +l+g+s  + +Ge+l++ Gp G+GKt+LL +laG l+p    e+G++   +  ++ +++ + +++ ++   d l a+L+++E ++f a+l        +e++  ve++l++++L++++d+++ +     +s G ++R a++  l+s+ p+  LDEPt  lD+++   la  l+++++ + +++l++ hq
  MMETSP1137-20121227|9683_1  52 RKLVLNGVSGAIEPGETLALMGPSGSGKTSLLCVLAGRLPPkgrlEEGSLLTLG-GVQLTKPFY-RRCGFVFQDDLLLAALTVKETIEFAAKLRLpqslgdEERTrRVEQTLTQLQLNDCADTAIGSekqrgVSGGERKRCAVGVELVSRPPILFLDEPTSGLDAASALSLALSLRKYAKDNEMIVLSSvHQ 241
                 467899*******************************99872222467666553.344455445.9***********************998765455664333359***************98753333449***********************************************999998876255 PP

>> TIGR01277  thiQ: thiamine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.3   0.0   6.1e-23   4.5e-21      20     206 ..      62     260 ..      50     266 .. 0.80

  Alignments for each domain:
  == domain 1    score: 73.3 bits;  conditional E-value: 6.1e-23
   TIGR01277  20 sveaGervailGesGaGkstllnliaGflepa....sGeikvndkdhtrsapyerpvsmlfqennlfahltvrqniglGlkpgl..klna.vqkekvedvarqvGiadylerlpee.....lsGGqrqrvalarclvrekpillldepfsaldpklreemlalvkkladekkltlllvthsl.sdaaaiasqvvvvedGk 206
                 ++e Ge +a++G+sG+Gk++ll ++aG l p     +G++   +     + p+ r    +fq++ l+a ltv++ i +  k  l   l   ++ ++ve+  +q+ ++d  +   ++     +sGG+r+r a+   lv   pil+ldep s ld +    +   ++k a+++++ +l   h++ s++ +  ++ +++++G 
  MMETSP1137-20121227|9683_1  62 AIEPGETLALMGPSGSGKTSLLCVLAGRLPPKgrleEGSLLTLGGV-QLTKPFYRRCGFVFQDDLLLAALTVKETIEFAAKLRLpqSLGDeERTRRVEQTLTQLQLNDCADTAIGSekqrgVSGGERKRCAVGVELVSRPPILFLDEPTSGLDAASALSLALSLRKYAKDNEMIVLSSVHQPrSNIFSLFDRLLLLSKGS 260
                 6889***********************9988533335665444433.34567777789******************98877665223444144568999999******99876433233449********************************998887777899**********999998356778899999999996 PP

>> TIGR00960  3a0501s02: type II secretory pathway family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.1   0.0   1.5e-22   1.1e-20       9     214 ..      46     259 ..      40     261 .. 0.79

  Alignments for each domain:
  == domain 1    score: 72.1 bits;  conditional E-value: 1.5e-22
   TIGR00960   9 kaykgaaelaldnvtvkiekGelvflvGhsGaGkstllklilgiekpsaGkirvsgqdltklrdrev..pflrrqiGivfqdfkllsdrtvydnvala..lriiGvkgr.eieervsaalekvGlkdkaka.....lPvqlsgGeqqrvaiaravvnkPallladePtgnlddelsrdi.lelleevnraGttvlvathd.enlveskrkrvltlskG 214
                 k+  + ++l l++v+  ie Ge   l+G+sG+Gk++ll ++ g+  p +G+  +++  l +l + ++  pf  r+ G vfqd  ll   tv + + +a  lr+    g+ e  +rv+++l ++ l+d a +         +sgGe++r a+   +v++P++l+ dePt+ ld + ++ + l+l +  +   + vl + h+ ++ + s   r+l lskG
  MMETSP1137-20121227|9683_1  46 KKESSKRKLVLNGVSGAIEPGETLALMGPSGSGKTSLLCVLAGR-LPPKGR--LEEGSLLTLGGVQLtkPF-YRRCGFVFQDDLLLAALTVKETIEFAakLRLPQSLGDeERTRRVEQTLTQLQLNDCADTaigseKQRGVSGGERKRCAVGVELVSRPPILFLDEPTSGLDAASALSLaLSLRKYAKDNEMIVLSSVHQpRSNIFSLFDRLLLLSKG 259
                 5667788999****************************988876.566786..566677777777652255.5568******************998733566555555156789**********9987641111145679**********************************9997356666667788889989997345566777788888887 PP

>> TIGR01842  type_I_sec_PrtD: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.7   0.0   2.6e-22   1.9e-20     325     536 ..      47     266 ..      21     271 .. 0.81

  Alignments for each domain:
  == domain 1    score: 70.7 bits;  conditional E-value: 2.6e-22
   TIGR01842 325 vppeekkktlkgisfalkaGealaiiGpsgsGkssLarllvGvwlpa....sGs.vrlDgadlkqwdretlGksiGYlPqd.veLfeGtvaeniaRfeenadaekvieaaklagvheli..lrlpkGYdteigeg.GaaLsgGqrqRiaLaRalygdPklvvLDePnanLDeeGeqalakalke.lkarkitvvvith..rpsllelvdkilvlkdGalkafGe 536
                  +++++k +l+g+s a+++Ge+la++GpsgsGk+sL  +l G  +p+    +Gs + l g++l    ++ + ++ G++ qd + L + tv+e i    +   ++++ +  +   v + +  l+l++  dt+ig++   ++sgG r+R a+   l   P ++ LDeP + LD++    la  l + +k ++++v+   h  r ++ +l d++l+l++G+   +G+
  MMETSP1137-20121227|9683_1  47 KESSKRKLVLNGVSGAIEPGETLALMGPSGSGKTSLLCVLAGRLPPKgrleEGSlLTLGGVQL----TKPFYRRCGFVFQDdLLLAALTVKETIEFAAKLRLPQSLGDEERTRRVEQTLtqLQLNDCADTAIGSEkQRGVSGGERKRCAVGVELVSRPPILFLDEPTSGLDAASALSLALSLRKyAKDNEMIVLSSVHqpRSNIFSLFDRLLLLSKGSTVYYGS 266
                 56678889**********************************998741111333123444444....356899*****99724555679****987777777999999999999998872356789******9761678***********************************999999998725666677776667335689****************9996 PP

>> TIGR03873  F420-0_ABC_ATP: proposed F420-0 ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.5   0.0   1.5e-21   1.1e-19      11     221 ..      50     267 ..      43     273 .. 0.78

  Alignments for each domain:
  == domain 1    score: 68.5 bits;  conditional E-value: 1.5e-21
   TIGR03873  11 aggrlivddvdvtaPaGaltgllGPnGsGkstllrllaGllap....daGev.dlagadlkalsrrararrvalveqdsdaevplsvrdvvalGriPhrslfaadsdedaevvdralarvelssladrdl.....stlsGGerqrvhlaralaqePklllldePtnhldvsaqlellalvrela.aegvtvvvalhdl.nlaasvcdhvvvldgGrvvaaGpp 221
                   ++l++++v     +G+  +l+GP GsGk+ ll +laG l p    ++G++ +l+g++l+        rr   v qd    + l+v++ + +     + +  +d  e +  v+++l++ +l++ ad ++       +sGGer+r  +   l  +P +l+ldePt  ld ++ l+l   +r+ a ++++ v+ ++h   +   s+ d++++l++G  v  G++
  MMETSP1137-20121227|9683_1  50 SKRKLVLNGVSGAIEPGETLALMGPSGSGKTSLLCVLAGRLPPkgrlEEGSLlTLGGVQLTKPF----YRRCGFVFQDDLLLAALTVKETIEFAAKLRLPQSLGDE-ERTRRVEQTLTQLQLNDCADTAIgsekqRGVSGGERKRCAVGVELVSRPPILFLDEPTSGLDAASALSLALSLRKYAkDNEMIVLSSVHQPrSNIFSLFDRLLLLSKGSTVYYGSV 267
                 567899**********************************988333335554466666665433....45678899*************99876443333333343.4556677788888888777765522221689*************************************9999999984567788899**9615567899*********99988876 PP

>> TIGR02204  MsbA_rel: ABC transporter, permease/ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.8   0.0   2.2e-21   1.6e-19     353     557 ..      53     266 ..      46     280 .. 0.83

  Alignments for each domain:
  == domain 1    score: 67.8 bits;  conditional E-value: 2.2e-21
   TIGR02204 353 qkaldgldltvrpGetvalvGPsGaGkstllelllrfydPq....sGai.lldGvdlreldpeelrerlalvpqdsalfaa.svleniryGrpdasdeeveaaakaaeadefisk..lpeGydtllG.ergvtLsGGqkqriaiarailkdapiLLLdeatsaLdaeseqlvqqaleelmkgrttlvia..h..rLatvlkadrivvldkGriveqGt 557
                 +++l+g++ +++pGet+al+GPsG+Gk+ ll +l     P+    +G++  l+Gv+l+    + + +r  +v qd  l+aa  v+e i +       + + +  ++ + ++ +++  l++  dt +G e+   +sGG ++r a+   ++   piL+Lde ts Lda s   +  +l +  k+   +v++  h  r       dr++ l kG  v  G+
  MMETSP1137-20121227|9683_1  53 KLVLNGVSGAIEPGETLALMGPSGSGKTSLLCVLAGRLPPKgrleEGSLlTLGGVQLT----KPFYRRCGFVFQDDLLLAAlTVKETIEFAAKLRLPQSLGDEERTRRVEQTLTQlqLNDCADTAIGsEKQRGVSGGERKRCAVGVELVSRPPILFLDEPTSGLDAASALSLALSLRKYAKDNEMIVLSsvHqpRSNIFSLFDRLLLLSKGSTVYYGS 266
                 6799****************************99988877433334554257888775....45788899999999888764899******999999999888888888888875226899*****9678889*************************************************999998633544556666789999999999998886 PP

>> TIGR02315  ABC_phnC: phosphonate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.1   0.0   2.2e-21   1.6e-19      12     229 ..      50     266 ..      44     272 .. 0.82

  Alignments for each domain:
  == domain 1    score: 68.1 bits;  conditional E-value: 2.2e-21
   TIGR02315  12 pngkqalknvnleikkGelvaviGlsGaGkstllrsinrlveissgsillegkevtklkkkelrk.lrkkigmifqeynlierltvlenvLsgrlgakstlksllglfseedkekAlelLervglaelaa.....kradqLsGGqqqRvaiaRalaqqpklilaDEPiasLDpksskqvmdllkrinkekgitvivnlHqvd.lakkyadrivglkageivfdga 229
                 ++ k +l+ v+ +i++Ge +a++G+sG+Gk+ ll  + +   + +g+  le+ ++ +l + +l k + ++ g++fq+  l++ ltv e +    ++ak  l + lg   ee +++  ++L++++l++ a+     ++   +sGG+++R a+   l+ +p +++ DEP++ LD +s+  +   l++ +k+++++v+ ++Hq      +  dr++ l +g+ v++g+
  MMETSP1137-20121227|9683_1  50 SKRKLVLNGVSGAIEPGETLALMGPSGSGKTSLLCVLAGRL-PPKGR--LEEGSLLTLGGVQLTKpFYRRCGFVFQDDLLLAALTVKETI---EFAAKLRLPQSLG--DEERTRRVEQTLTQLQLNDCADtaigsEKQRGVSGGERKRCAVGVELVSRPPILFLDEPTSGLDAASALSLALSLRKYAKDNEMIVLSSVHQPRsNIFSLFDRLLLLSKGSTVYYGS 266
                 5677899***************************9887654.44555..56667777777666543899****************98876...4555555555444..56777778888888888887752212256778***********************************************************9751456889*************986 PP

>> TIGR02769  nickel_nikE: nickel import ATP-binding protein NikE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.6   0.0   1.2e-19   8.5e-18      20     231 ..      49     263 ..      43     280 .. 0.84

  Alignments for each domain:
  == domain 1    score: 62.6 bits;  conditional E-value: 1.2e-19
   TIGR02769  20 kkqrkavldnvslsleeGetvallGrsGaGkstlarlllGlekPakGevsfrGqdlakldrkqrkafrrdvqlvfqds..isavnprksvreiigePlrhltsldeserkariaellelvelrs..evl..dklPrqlsGGqlqriniaralavePklivldeavsnldlvlqasilellkklkqefGlaylfithdlr.lvqkfaqrvlvldeGqive 231
                  ++rk vl++vs ++e Get+al+G sG+Gk+ l  +l G   P kG++  +G  l+    + +k f r   +vfqd    +a+  +++++   +  lr  +sl + er +r+++ l +++l++  +++    + r +sGG  +r ++   l  +P ++ lde  s ld    +s+   l+k  ++  + +l   h  r  + ++ +r+l+l +G  v 
  MMETSP1137-20121227|9683_1  49 SSKRKLVLNGVSGAIEPGETLALMGPSGSGKTSLLCVLAGR-LPPKGRLE-EGSLLTLGGVQLTKPFYRRCGFVFQDDllLAALTVKETIEF--AAKLRLPQSLGDEERTRRVEQTLTQLQLNDcaDTAigSEKQRGVSGGERKRCAVGVELVSRPPILFLDEPTSGLDAASALSLALSLRKYAKDNEMIVLSSVHQPRsNIFSLFDRLLLLSKGSTVY 263
                 568999*******************************9995.67899986.677666666677899***********722578888888875..56799999******************99862222212566788************************************999999999999999988888888662688999******9998876 PP

>> TIGR01186  proV: glycine betaine/L-proline transport ATP binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.6   0.0     1e-19   7.6e-18       6     212 ..      53     265 ..      48     270 .. 0.85

  Alignments for each domain:
  == domain 1    score: 62.6 bits;  conditional E-value: 1e-19
   TIGR01186   6 klgvndvdleieeGeiiviiGlsGsGkstlvrllnrliePtaGkilidGediaeisdaelrevrrkkiamviqkialfPhmtildnislglel...lkideqerkekalealklvdleeyedry.....PdelsGGmqqrvGlaralaaePdlllmdeafsaldPlirdelqdelvklqkklqktivfithd.ldealrlgdrivilkaGeivqvG 212
                 kl +n v+ +ie Ge + ++G+sGsGk++l+ +l   + P +G++  +  ++  +  ++l +   ++ ++v+q+  l+   t+++ i+++ +l   + + ++er ++  ++l +++l++ +d+         +sGG ++r  +   l   P++l++de+ s ld     +l   l k  k+ +  ++   h    + + l dr+ +l +G  v  G
  MMETSP1137-20121227|9683_1  53 KLVLNGVSGAIEPGETLALMGPSGSGKTSLLCVLAGRL-PPKGRL--EEGSLLTLGGVQLTKPFYRRCGFVFQDDLLLAALTVKETIEFAAKLrlpQSLGDEERTRRVEQTLTQLQLNDCADTAigsekQRGVSGGERKRCAVGVELVSRPPILFLDEPTSGLDAASALSLALSLRKYAKDNEMIVLSSVHQpRSNIFSLFDRLLLLSKGSTVYYG 265
                 566788999*********************99987555.778985..555678899******9*****************************955557889****************9998864221114569********************************************9888777666666762466779**********9999776 PP

>> TIGR00958  3a01208: antigen peptide transporter 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.3   0.0   1.3e-18   9.7e-17     493     692 ..      52     262 ..      48     269 .. 0.75
   2 ?   -2.2   0.1       2.7     2e+02     140     153 ..     426     439 ..     357     545 .. 0.44

  Alignments for each domain:
  == domain 1    score: 58.3 bits;  conditional E-value: 1.3e-18
   TIGR00958 493 dkpvlkdLtftlepGevvalVGPsGsGKStvaallenlYqPtg....Gqv.llDgkplkeydhkylhrkvalVgqEPvlf.sgsvreNiaYGltktedeevtaaakaanahdFiselekg..ydtevg.ekGsqlsgGqkqriAiARALvrkPrvLiLDeAtSALDa..eveqllqesksaksrtvlli..ah..rLstvekadkilvlkkgsvv 692
                 +k vl++ +  +epGe+ al GPsGsGK +   +l     P+g    G++ +l g++l++    ++ r+ + V q+ +l  + +v+e i +  +    +++    ++  +++ +++l+ +   dt +g ek   +sgG ++r A+   Lv +P +L LDe tS LDa  +   +l   k ak+  ++++  +h  r ++    d+ l+l+kgs v
  MMETSP1137-20121227|9683_1  52 RKLVLNGVSGAIEPGETLALMGPSGSGKTSLLCVLAGRLPPKGrleeGSLlTLGGVQLTK---PFY-RRCGFVFQDDLLLaALTVKETIEFAAKLRLPQSLGDEERTRRVEQTLTQLQLNdcADTAIGsEKQRGVSGGERKRCAVGVELVSRPPILFLDEPTSGLDAasALSLALSLRKYAKDNEMIVLssVHqpRSNIFSLFDRLLLLSKGSTV 262
                 5789********************************999996333337752578887764...555.5677787777665167*********9999899999999999999999877533349****95677889********************************553333343344455555444311442234555666666666666655 PP

  == domain 2    score: -2.2 bits;  conditional E-value: 2.7
   TIGR00958 140 eeqsetadlllrLL 153
                 ++  ++++++lrL+
  MMETSP1137-20121227|9683_1 426 QQAFNAQNTVLRLF 439
                 44444444444443 PP

>> TIGR03410  urea_trans_UrtE: urea ABC transporter, ATP-binding protein UrtE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.3   0.0   1.1e-18   7.9e-17      13     216 ..      53     267 ..      45     275 .. 0.79

  Alignments for each domain:
  == domain 1    score: 59.3 bits;  conditional E-value: 1.1e-18
   TIGR03410  13 sevlrdvslevekgevvavlGrngvGkttllkalvgllkvksGeielegeditklkpeervkaGiayvpqGreifpkltveenlelglealkkk.......ekkipeeiyelFPvlkeml.....kRrgGdLsGGqqqqlaiaRaLvtePklllLDePteGiqPsiikeiekvikelakekdlaill.veqvldfaleladrylvlerGevvaegek 216
                   vl++vs  +e ge++a++G  g Gkt+ll  l g l+ k    e +  ++  ++ ++   +  ++v q   ++++ltv+e +e +++ +  +       ++++++++ +l   l++       + +   +sGG ++  a++  Lv++P +l LDePt G+  +    ++  +++ ak++++ +l  v q  +   +l dr+l+l++G++v  g+ 
  MMETSP1137-20121227|9683_1  53 KLVLNGVSGAIEPGETLALMGPSGSGKTSLLCVLAGRLPPKGRLEEGSLLTLGGVQLTKPFYRRCGFVFQDDLLLAALTVKETIEFAAKLRLPQslgdeerTRRVEQTLTQL--QLNDCAdtaigSEKQRGVSGGERKRCAVGVELVSRPPILFLDEPTSGLDAASALSLALSLRKYAKDNEMIVLSsVHQPRSNIFSLFDRLLLLSKGSTVYYGSV 267
                 569***********************************986433333344555566666667789********************999876433355333345555555444..233433000114455569**************************************************9998537899999***************9988765 PP

>> TIGR03522  GldA_ABC_ATP: gliding motility-associated ABC transporter ATP-binding subunit GldA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.1   0.0   1.4e-18     1e-16      15     212 ..      53     263 ..      43     281 .. 0.85

  Alignments for each domain:
  == domain 1    score: 59.1 bits;  conditional E-value: 1.4e-18
   TIGR03522  15 qkaldevsfeaekGeivGflGPnGaGkstlmkiltgylkads....GsvavagedvlknslevrkniGylPehnPlyldlyvreylefsaal...yklkgrklkkrveelielvGlkaeqhkkiga.....lskGyrqrvGlakallhdPkvlildePttGldPnqlveirevikeiakdktvilsthimq...evealcdrviiinkGkiva 212
                 + +l+ vs ++e+Ge + ++GP G+Gk++l+ +l+g l++++    Gs+   g   l+++    +  G++ + + l   l v+e +ef a+l     l ++++ +rve+ + +  l+  +   ig      +s G r+r  +   l+  P +l ldePt+Gld    + +   +++ akd  +i+ + + q   ++ +l dr++++ kG  v 
  MMETSP1137-20121227|9683_1  53 KLVLNGVSGAIEPGETLALMGPSGSGKTSLLCVLAGRLPPKGrleeGSLLTLGGVQLTKP--FYRRCGFVFQDDLLLAALTVKETIEFAAKLrlpQSLGDEERTRRVEQTLTQLQLNDCADTAIGSekqrgVSGGERKRCAVGVELVSRPPILFLDEPTSGLDAASALSLALSLRKYAKDNEMIVLSSVHQprsNIFSLFDRLLLLSKGSTVY 263
                 5589***********************************975443388877776655555..67899************************944447889999**********99998887766633333499***********************************************999887777773335677889999999998876 PP

>> TIGR03797  NHLM_micro_ABC2: NHLM bacteriocin system ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.6   0.0   4.9e-18   3.6e-16     465     631 ..      52     224 ..      46     266 .. 0.81

  Alignments for each domain:
  == domain 1    score: 56.6 bits;  conditional E-value: 4.9e-18
   TIGR03797 465 gplvLddvslkiepGefvaivGaSGsGKStllrlLLgFekPesGsvlyDGq..dlekldv.qavRrqlGvVLQngrllsg.sileniaggasltldeaw.eaarmagleeDikamPmg..lhTvi.segggtlSGGQrQRlliAralvrkPrillfDEATSALDNrtQaiVsesl 631
                  +lvL+ vs  iepGe +a++G+SGsGK +ll +L g   P +G +  +G    l ++++ +   r++G V+Q+  ll++ ++ e+i  +a+l l +   +  r+  +e+ ++++ +     T i se   ++SGG r+R  +   lv++P il++DE TS LD  +      sl
  MMETSP1137-20121227|9683_1  52 RKLVLNGVSGAIEPGETLALMGPSGSGKTSLLCVLAGR-LPPKGRLE-EGSllTLGGVQLtKPFYRRCGFVFQDDLLLAAlTVKETIEFAAKLRLPQSLgDEERTRRVEQTLTQLQLNdcADTAIgSEKQRGVSGGERKRCAVGVELVSRPPILFLDEPTSGLDAASALSLALSL 224
                 579*******************************9996.56667654.454113445554145789********998876378899999999888777625567778999999988753367877589999*********************************88766666665 PP

>> TIGR02203  MsbA_lipidA: lipid A export permease/ATP-binding protein MsbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.5   0.0   5.2e-18   3.8e-16     344     547 ..      51     262 ..      29     269 .. 0.74

  Alignments for each domain:
  == domain 1    score: 56.5 bits;  conditional E-value: 5.2e-18
   TIGR02203 344 ddrealdsislkveaGevvalvGrsGsGkstlvnllpRFy....epdsGeil.lDgvdladlkLasLRrqvalvsqdvvLF.ddtiaenvaYgel....eevdeaeveealaaaylkdlvdklpeGldtevGengsk.LsGGqRqRlaiaRallkdaPiLiLDeatsaLDneseRlvqaaLerlmkgRttlvia..h..RLstiekaDrivvlddGkiv 547
                 + + +l+++s  +e+Ge++al+G+sGsGk++l+ +l+  +      ++G++l l gv+l +       r+  +v qd +L    t+ e + ++++    +++ ++e  + +++  l++l  +l++  dt +G++  + +sGG R+R a+   l+   PiL LDe ts LD+ s   +  +L +  k+   +v++  h  R       Dr++ l +G  v
  MMETSP1137-20121227|9683_1  51 KRKLVLNGVSGAIEPGETLALMGPSGSGKTSLLCVLAGRLppkgRLEEGSLLtLGGVQLTK----PFYRRCGFVFQDDLLLaALTVKETIEFAAKlrlpQSLGDEERTRRVEQT-LTQL--QLNDCADTAIGSEKQRgVSGGERKRCAVGVELVSRPPILFLDEPTSGLDAASALSLALSLRKYAKDNEMIVLSsvHqpRSNIFSLFDRLLLLSKGSTV 262
                 4556899************************998876444011144667665356666653....4677899999976655167*********994444334444433333333.2332..678899*****8776549***********************************999999999999988888752233244444556666666666665 PP

>> TIGR01846  type_I_sec_HlyB: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.0   0.0   6.5e-18   4.8e-16     469     675 ..      52     267 ..      24     281 .. 0.77

  Alignments for each domain:
  == domain 1    score: 56.0 bits;  conditional E-value: 6.5e-18
   TIGR01846 469 spevlsnlsldikaGeviGivGpsGsGkstl.tkllqrlyvPekGrv....lvdgvdlaladPawlrrqvgvvlqenvlfsr.sirdnialakPaiseekviaaaklaGahdfis..elkqGyetevg.ekGaalsGGqrqrialaralvanPrilildeatsaldyeseavimrnlreickgrtviiia..h..rlstvraadrilvlekGkivesGkh 675
                    vl+ +s  i++Ge++ ++GpsGsGk+ l   l  rl  P kGr+    l+    + l+ P  + r+ g v+q+++l+   ++++ i  a      + +    +    ++ ++  +l++  +t +g ek   +sGG r+r a+   lv+ P il lde ts ld+ s  ++   lr+ +k+  +i+++  h  r +     dr+l+l kG  v  G+ 
  MMETSP1137-20121227|9683_1  52 RKLVLNGVSGAIEPGETLALMGPSGSGKTSLlCVLAGRL--PPKGRLeegsLLTLGGVQLTKP--FYRRCGFVFQDDLLLAAlTVKETIEFAAKLRLPQSLGDEERTRRVEQTLTqlQLNDCADTAIGsEKQRGVSGGERKRCAVGVELVSRPPILFLDEPTSGLDAASALSLALSLRKYAKDNEMIVLSsvHqpRSNIFSLFDRLLLLSKGSTVYYGSV 267
                 4569999*********************77615566676..6677742222222334445555..45889*******9997548999999876554444555555555555554411677899**99758999*************************************************999998753355588899999*********99988875 PP

>> TIGR00972  3a0107s01c2: phosphate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.0   0.0     1e-17   7.7e-16      14     204 ..      53     241 ..      44     271 .. 0.77

  Alignments for each domain:
  == domain 1    score: 56.0 bits;  conditional E-value: 1e-17
   TIGR00972  14 kealkdvnleikknkvtaliGpsGcGkstllrslnrlndlveevrieGkvl.legkdiydkkldvvelrkkvGmvfqkpnpfp.msiydnvayglrlk..gikdkkeldeiveesLkkaalwdevkdkl.kksalsLsGGqqqrlciaralavePevlLlDePtsaLDpiatekieeliqeLkkkytivivthnmq 204
                 k +l+ v+  i+  +  al+GpsG+Gk++ll  l        +   eG++l l g ++++       + ++ G vfq     +  ++ + + ++ +l+  +    +e  ++ve++L++  l d   + + +++  ++sGG ++r ++   l  +P +l lDePts LD+ ++ ++   +++ +k+  +++     q
  MMETSP1137-20121227|9683_1  53 KLVLNGVSGAIEPGETLALMGPSGSGKTSLLCVLAGRLPPK-GRLEEGSLLtLGGVQLTKP------FYRRCGFVFQDDLLLAaLTVKETIEFAAKLRlpQSLGDEERTRRVEQTLTQLQLNDCADTAIgSEKQRGVSGGERKRCAVGVELVSRPPILFLDEPTSGLDAASALSLALSLRKYAKDNEMIVLSSVHQ 241
                 66899999***********************9997433333.3334566551556666655......7789******98887659********977661145556788899***********99988883456789****************************************99999999988877654333 PP

>> TIGR01978  sufC: FeS assembly ATPase SufC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.8   0.0   1.2e-17   9.1e-16      11     229 ..      51     267 ..      44     278 .. 0.79

  Alignments for each domain:
  == domain 1    score: 55.8 bits;  conditional E-value: 1.2e-17
   TIGR01978  11 edkeiLkglnlevkkGevhaimGpnGsGkstLskvlagh..ekyevtsGeiklkgqdlleleveeraraGlflafqapeeipGvsnkeflrsalnavrkargeeeldllefekllkeklellelde...elleRslneGfsGGekkrneilqlallePklaiLDeiDsGlDvDalkivaegvnklreeekalliit.hyerllelikPdvvhvlldGrivksGdv 229
                 + k +L+g++ ++++Ge+ a+mGp GsGk  L  vlag+  +k ++++G++   g   l        r G    fq    ++ +++ke +  a++ +      ++l   e ++ ++++l +l+l+    + +  +   G sGGe+kr+ +   ++ +P +  LDe  sGlD  +   +a  + k++++++ +++ + h+ r       d + +l +G  v  G+v
  MMETSP1137-20121227|9683_1  51 KRKLVLNGVSGAIEPGETLALMGPSGSGKTSLLCVLAGRlpPKGRLEEGSLLTLGGVQLTKPF--YRRCGF--VFQDDLLLAALTVKETIEFAAKLRL----PQSLGDEERTRRVEQTLTQLQLNDcadTAIGSEKQRGVSGGERKRCAVGVELVSRPPILFLDEPTSGLDAASALSLALSLRKYAKDNEMIVLSSvHQPRSNIFSLFDRLLLLSKGSTVYYGSV 267
                 45789*********************************8667999****98766654333333..345553..59***************99999887....34455566666666666666666544377888899**************999******************99999999999999997777766524444333334688888888888877765 PP

>> TIGR03411  urea_trans_UrtD: urea ABC transporter, ATP-binding protein UrtD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.1   0.0   1.2e-17     9e-16      18     226 ..      56     267 ..      52     271 .. 0.85

  Alignments for each domain:
  == domain 1    score: 56.1 bits;  conditional E-value: 1.2e-17
   TIGR03411  18 lndlslsveegelrviiGpnGaGkttllDvitGktrpdeGsvlfkgk.dltklkeaeiarlGigRkfqkpsvfeeltvlenlelalkadksvlallfarlskeekerieevleligLeekadkkagl.....LshGqkqwLeigmllvqepkllllDePvaGmtdeetektaellkelakersvvvve..h.DmefvrelaekvtvlheGkvlaeGsl 226
                 ln +s ++e+ge  +++Gp G+Gkt ll v++G+  p +G++   +   l +++ ++      g  fq   ++  ltv+e +e a+k   ++ ++l    ++e+++r+e++l++++L++ ad+  g+     +s G++++  +g+ lv +p +l+lDeP++G+ ++   + a  l++ ak++ ++v+   h   + + +l +++  l++G+++  Gs+
  MMETSP1137-20121227|9683_1  56 LNGVSGAIEPGETLALMGPSGSGKTSLLCVLAGRL-PPKGRLEEGSLlTLGGVQLTKPFYRRCGFVFQDDLLLAALTVKETIEFAAKL--RLPQSL---GDEERTRRVEQTLTQLQLNDCADTAIGSekqrgVSGGERKRCAVGVELVSRPPILFLDEPTSGLDAASALSLALSLRKYAKDNEMIVLSsvHqPRSNIFSLFDRLLLLSKGSTVYYGSV 267
                 6788889***************************9.66799888777788888888888889999******************99865..567777...6788999************999987664334449****************************************************975223134566677777777777777777765 PP

>> TIGR03771  anch_rpt_ABC: anchored repeat-type ABC transporter, ATP-binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.4   0.1   1.7e-16   1.2e-14       3     187 ..      63     257 ..      62     268 .. 0.81

  Alignments for each domain:
  == domain 1    score: 52.4 bits;  conditional E-value: 1.7e-16
   TIGR03771   3 vdkGellgllGpnGaGkttllrailglikvakGsvkvagkssrkgrreiGyvpqrhefawdfpidveqtvlsGragliGllrrpkk....adfaavadalervklteladrpvGe.....lsGGqrqrvlvaralavkpslllldepftGldlpsqellvelfeelagegtailmt.thdl.aeavatcdrvvlln 187
                 +++Ge l+l+Gp G+Gkt+ll  + g ++  kG+++ ++  +  g +      +r  f ++  + ++   ++        lr p+     +  + v+++l + +l++ ad ++G      +sGG+r+r  v   l  +p +l+ldep +Gld  s  +l+  +++ a++++ i+++  h+  ++  +  dr++ll 
  MMETSP1137-20121227|9683_1  63 IEPGETLALMGPSGSGKTSLLCVLAGRLP-PKGRLEEGSLLTLGGVQLTKPFYRRCGFVFQDDLLLAALTVKETIEFAAKLRLPQSlgdeERTRRVEQTLTQLQLNDCADTAIGSekqrgVSGGERKRCAVGVELVSRPPILFLDEPTSGLDAASALSLALSLRKYAKDNEMIVLSsVHQPrSNIFSLFDRLLLLS 257
                 679******************99989888.799999888777777776667777888888777777777777777888888887642211456889******************6555558***************************************999999999887776515664134567788888875 PP

>> TIGR02314  ABC_MetN: D-methionine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.6   0.0     2e-16   1.5e-14      14     226 ..      49     268 ..      43     282 .. 0.84

  Alignments for each domain:
  == domain 1    score: 51.6 bits;  conditional E-value: 2e-16
   TIGR02314  14 gdkkikaldnvslfvpkgqifgvigasgagkstlircvnllekptsgavivdgkdlttlsnaelvka.rrqigmifqhfnllssrtvfgnvalp..lele.ntpkekikrkvtellalvglsdkkdsy.....psnlsggqkqrvaiaralasepkvllcdeatsaldpattqsilellkeinrrlgltillithe.mdvvkricdevavidkgeliekgtvs 226
                 ++k+   l+ vs  +  g+ + ++g sg+gk++l+ cv     p +g +  +g  l tl   +l+k   r+ g++fq   ll++ tv + + +   l l  +   e+  r+v++ l+ + l+d  d+         +sgg+++r a+   l s p +l+ de ts ld a++ s+   l++  +  ++ +l   h+    + ++ d++ +++kg  +  g+v+
  MMETSP1137-20121227|9683_1  49 SSKRKLVLNGVSGAIEPGETLALMGPSGSGKTSLL-CVLAGRLPPKGRL-EEG-SLLTLGGVQLTKPfYRRCGFVFQDDLLLAALTVKETIEFAakLRLPqSLGDEERTRRVEQTLTQLQLNDCADTAigsekQRGVSGGERKRCAVGVELVSRPPILFLDEPTSGLDAASALSLALSLRKYAKDNEMIVLSSVHQpRSNIFSLFDRLLLLSKGSTVYYGSVA 268
                 56666789***********************9986.9999999***984.455.68889******963799******************9865511555414457788899999*******9999864211113469*************************************9999999999999999998887346788999999999999999988886 PP

>> TIGR03740  galliderm_ABC: lantibiotic protection ABC transporter, ATP-binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.5   0.0   2.9e-16   2.1e-14       9     207 ..      49     266 ..      43     271 .. 0.82

  Alignments for each domain:
  == domain 1    score: 51.5 bits;  conditional E-value: 2.9e-16
   TIGR03740   9 kfkkqavvnnvslkvkknsvygllGpnGaGkstllklltGllrk....tsGei.lldgrewtrkdlkkiGsliesPalyenltarenlkvrtlll...gl....pesrieevlkivdlen.....tekkkakqfslGmkqrlGiaiallnkPkllildePtnGldPlGiqelreliksfpekGitvilss.hi.lsevelladhiGiiseGklkyekk 207
                 + k++ v+n vs +++  +  +l+Gp G+Gk++ll +l+G l +    ++G++ +l g ++t+   +  G + ++  l   lt +e ++  ++l+   +l     + r+e+ l+ ++l++     ++  k +  s G ++r  + + l+ +P +l ldePt Gld      l   ++ + ++   ++lss h   s++  l d + ++s+G   y ++
  MMETSP1137-20121227|9683_1  49 SSKRKLVLNGVSGAIEPGETLALMGPSGSGKTSLLCVLAGRLPPkgrlEEGSLlTLGGVQLTKPFYRRCGFVFQDDLLLAALTVKETIEFAAKLRlpqSLgdeeRTRRVEQTLTQLQLNDcadtaIGSEKQRGVSGGERKRCAVGVELVSRPPILFLDEPTSGLDAASALSLALSLRKYAKDNEMIVLSSvHQpRSNIFSLFDRLLLLSKGSTVYYGS 266
                 45778899*********************************97622224677526899******************************99988752223321113468999999999987222223456777899**************************************999999999988888884433699999999999999998888665 PP

>> TIGR02324  CP_lyasePhnL: phosphonate C-P lyase system protein PhnL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.8   0.0   4.4e-16   3.2e-14      18     207 ..      50     240 ..      41     248 .. 0.81

  Alignments for each domain:
  == domain 1    score: 50.8 bits;  conditional E-value: 4.4e-16
   TIGR02324  18 GvklpvlkevsleveaGelvalsGksGaGkstllkslyanYlpesgrilvrhegeivdlvkaserevlevRrktigyvsq...fLrviPRvsalevvaepllelGvereearakakellarlnipe....rLWslaPatfsGGekqRvniaraliadrPiLLLdePtasLdaanrk.vvvelikeakargaaligifh 207
                  ++  vl+ vs ++e Ge +al+G+sG+Gk +ll +l a  lp  gr+    eg+++ l  ++  +  + R    g+v q    L ++  + ++e +a+  l + + +ee + ++++ l++l++ +     + s      sGGe++R  +   l++  PiL LdePt+ Ldaa      + l k ak + + +++ +h
  MMETSP1137-20121227|9683_1  50 SKRKLVLNGVSGAIEPGETLALMGPSGSGKTSLLCVL-AGRLPPKGRL---EEGSLLTLGGVQLTKPFYRR---CGFVFQddlLLAALTVKETIEFAAKLRLPQSLGDEERTRRVEQTLTQLQLNDcadtAIGSEKQRGVSGGERKRCAVGVELVSRPPILFLDEPTSGLDAASALsLALSLRKYAKDNEMIVLSSVH 240
                 5567799*************************99766.5556666886...57999988888888777755...899988666789999999*******************************98722223555667789*******************************987640445566666766666666666 PP

>> TIGR03005  ectoine_ehuA: ectoine/hydroxyectoine ABC transporter, ATP-binding protein EhuA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.1   0.0     1e-14   7.6e-13      14     227 ..      54     263 ..      45     269 .. 0.76

  Alignments for each domain:
  == domain 1    score: 46.1 bits;  conditional E-value: 1e-14
   TIGR03005  14 tvldglelevaaGekvaliGpsGsGkstilrilmtletideGsikvegeqlyhmkgrkGklvpadekhl.rkvrekiGmvfqsfnlfphktvldnvteapvlvk..GvaraeaekravelldmvGladkadal...paq..lsGGqkqrvaiaralalrpkvllfdevtsaldpelveevlnvlrrlasetdltmllvthemgf.arefadrvlffdkGkive 227
                  vl+g++  +++Ge +al+GpsGsGk+++l +l    +  +G+++            +G+l+      l +    + G+vfq   l+   tv + +  a  l +   +   e  +r  + l  + l d ad+      q  +sGG+++r a+   l  rp +l++de+ts ld      +   lr+ a+++++ +l   h+ +     + dr+l++ kG  v 
  MMETSP1137-20121227|9683_1  54 LVLNGVSGAIEPGETLALMGPSGSGKTSLLCVLAGRLP-PKGRLE------------EGSLLTLGGVQLtKPFYRRCGFVFQDDLLLAALTVKETIEFAAKLRLpqSLGDEERTRRVEQTLTQLQLNDCADTAigsEKQrgVSGGERKRCAVGVELVSRPPILFLDEPTSGLDAASALSLALSLRKYAKDNEMIVLSSVHQPRSnIFSLFDRLLLLSKGSTVY 263
                 589****************************9975332.234332............34444443333304577899*****************999876554411444444445555566666666666643111333449********************************999999999*****************9875156899*****99998765 PP

>> TIGR03415  ABC_choXWV_ATP: choline ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.3   0.0   4.1e-15     3e-13      38     197 ..      54     214 ..      46     262 .. 0.86

  Alignments for each domain:
  == domain 1    score: 47.3 bits;  conditional E-value: 4.1e-15
   TIGR03415  38 lgvadasldveeGeilvlmGlsGsGkssllravnglnpvsrGkvlvkdedkevdvakcdeatlrklrtkrvsmvfqkfallPWrtveenvafGlel...sGvakaerrkrveeqlelvglaeWadk.....kvgelsGGmqqrvGlarafateadillmdePfsaldP 197
                 l  +++s  +e Ge l lmG sGsGk+sll  + g       ++  k   +e  + ++   +l k   +r   vfq   ll  +tv+e + f   l   + ++++er +rve+ l  ++l++ ad+     k   +sGG ++r  +   +    +il++deP s ld 
  MMETSP1137-20121227|9683_1  54 LVLNGVSGAIEPGETLALMGPSGSGKTSLLCVLAG-------RLPPKGRLEEGSLLTLGGVQLTKPFYRRCGFVFQDDLLLAALTVKETIEFAAKLrlpQSLGDEERTRRVEQTLTQLQLNDCADTaigseKQRGVSGGERKRCAVGVELVSRPPILFLDEPTSGLDA 214
                 556889999********************976654.......444444445556778888889999999***********************9887446699******************9999862222256679******************************96 PP

>> TIGR03269  met_CoM_red_A2: methyl coenzyme M reductase system, component A2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.2   0.0     7e-15   5.1e-13     301     523 ..      57     278 ..      48     283 .. 0.83

  Alignments for each domain:
  == domain 1    score: 46.2 bits;  conditional E-value: 7e-15
   TIGR03269 301 dnvslevkekeifGlvGtsGaGkttlskilaGvleptsGevevrvGdewvdmtkkgvlerGrakkyiGllhqeyalyphrtvlenlteaiglelpdela....krkavivlkavGfdeekakeildklpdelseGerhrvalaqvlikeprivildeptGtmdpitkvkvaesilkareeleetfvivshd.mdfvlevcdraalmrdGkivkiGdpeeiveelteee 523
                 ++vs  ++ +e   l+G sG+Gkt+l  +laG l+p  G++e     e   +t  gv+      +  G+++q+  l +  tv e +  a  l lp+ l+    +r+   +l +  +++   + i       +s Ger+r+a+   l+  p i+ ldept  +d  +  ++a s+ k  ++ e   +   h+    + ++ dr  l+ +G  v  G+ +  v  + e+ 
  MMETSP1137-20121227|9683_1  57 NGVSGAIEPGETLALMGPSGSGKTSLLCVLAGRLPPK-GRLE-----EGSLLTLGGVQLTKPFYRRCGFVFQDDLLLAALTVKETIEFAAKLRLPQSLGdeerTRRVEQTLTQLQLNDCADTAIGSEKQRGVSGGERKRCAVGVELVSRPPILFLDEPTSGLDAASALSLALSLRKYAKDNEMIVLSSVHQpRSNIFSLFDRLLLLSKGSTVYYGSVAGAVPYIEEHA 278
                 6778889999************************994.6553.....33334555555555557789****************************998733324566789********999*****************************************************998887665544444542567889999999999999999999888777776665 PP

>> TIGR03796  NHLM_micro_ABC1: NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.3   0.0   1.1e-14     8e-13     492     661 ..      53     227 ..      46     267 .. 0.79

  Alignments for each domain:
  == domain 1    score: 45.3 bits;  conditional E-value: 1.1e-14
   TIGR03796 492 apliedfslslkpGqrvAlvGgsGsGkstiaklvaGlyepw....sGeilfDgkpreeiprevlanslalvdqdivlfegtvrdnltlwdetipeedlvrAakDAaihdvilarpgg..yeael.aegganlsGGqrqRleiARaLvknPsiLilDEatsaLDaetEkaidenlrrR 661
                 + +++++s  ++pG+ +Al+G+sGsGk  +  ++aG   p     +G++l       ++++   + +  + + d++l + tv++ + +  +    ++l +  +   +++++++++ +   ++ + +e  + +sGG+r+R  +   Lv++P iL lDE ts LDa+   ++   lr+ 
  MMETSP1137-20121227|9683_1  53 KLVLNGVSGAIEPGETLALMGPSGSGKTSLLCVLAGRLPPKgrleEGSLLTL--GGVQLTKPFYRRCGFVFQDDLLLAALTVKETIEFAAKLRLPQSLGDEERTRRVEQTLTQLQLNdcADTAIgSEKQRGVSGGERKRCAVGVELVSRPPILFLDEPTSGLDAASALSLALSLRKY 227
                 5578899999**************************8866422113444332..33567777777777777778999999*******99998888999999999999999988764411555654588899***********************************99999999985 PP

>> TIGR02770  nickel_nikD: nickel import ATP-binding protein NikD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.0   0.0   1.2e-14   8.4e-13       4     208 ..      58     265 ..      55     276 .. 0.80

  Alignments for each domain:
  == domain 1    score: 46.0 bits;  conditional E-value: 1.2e-14
   TIGR02770   4 dvnlslkrgkvlalvGesGsGksltalailglldkeltktsGei.lldgkelaalalrgreialilqnPr..safnPlltikeqlletlkalekls.kqakelivealeavgLeeaee..vlkkypfelsGGmlqRvmialallleaplliaDePttdlDvvvqaevLklleelrekrglgillithDl.gvvaeladevavmekGkiverg 208
                 +v+  +  g+ lal+G sGsGk+     + g l+++ +  +G++ +l g +l++ ++r  ++++++q+     a++   ti+  +   l+  ++l  ++ + ++ ++l++ +L++ +   + ++    +sGG  +R  + + l++++p+l+ DePt+ lD+++++ +   l++  +++++ +l   h   + +  l d +++++kG  v  g
  MMETSP1137-20121227|9683_1  58 GVSGAIEPGETLALMGPSGSGKTSLLCVLAGRLPPKGRLEEGSLlTLGGVQLTKPFYR--RCGFVFQDDLllAALTVKETIE--FAAKLRLPQSLGdEERTRRVEQTLTQLQLNDCADtaIGSEKQRGVSGGERKRCAVGVELVSRPPILFLDEPTSGLDAASALSLALSLRKYAKDNEMIVLSSVHQPrSNIFSLFDRLLLLSKGSTVYYG 265
                 67778899**************988888999999999999999626788899988887..5799***975214454444444..44556777777756666789999*******98652256777888***********************************************9999999987786415678888888888888777655 PP

>> TIGR01257  rim_protein: rim ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.5   0.0   1.5e-14   1.1e-12     959    1138 ..      69     261 ..      62     270 .. 0.78

  Alignments for each domain:
  == domain 1    score: 43.5 bits;  conditional E-value: 1.5e-14
   TIGR01257  959 taflghngagktttlsiltgllppt....sgtvl.vggkdietnldavrqslgmcpqhnilfhhltvaehilfyaqlk...grsweeaqlemeam.....ledtglhhkrneeaqdlsgglqrklsvaiafvgdakvvvldeptsgvdpysrrsiwdlllkyrs.grtiimsthhmdeadl..lgdriaiisqgrl 1138
                   a++g  g+gkt+ l +l+g lpp      g++l +gg ++        +  g++ q ++l+  ltv e i f a+l+       ee    +e       l+d        e+ + +sgg +++ +v + +v    ++ ldeptsg+d  s  s+   l ky      i++s+ h   +++  l dr+ ++s+g  
  MMETSP1137-20121227|9683_1   69 LALMGPSGSGKTSLLCVLAGRLPPKgrleEGSLLtLGGVQLTK---PFYRRCGFVFQDDLLLAALTVKETIEFAAKLRlpqSLGDEERTRRVEQTltqlqLNDCADTAIGSEKQRGVSGGERKRCAVGVELVSRPPILFLDEPTSGLDAASALSLALSLRKYAKdNEMIVLSSVHQPRSNIfsLFDRLLLLSKGST 261 
                  5899********************7333246665246655543...345568************************98422223456555666550111155666666678999******************************************99****761567889999999999844569***9999964 PP

>> TIGR02323  CP_lyasePhnK: phosphonate C-P lyase system protein PhnK
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.3   0.0   1.8e-13   1.3e-11      21     220 ..      59     265 ..      44     275 .. 0.71

  Alignments for each domain:
  == domain 1    score: 42.3 bits;  conditional E-value: 1.8e-13
   TIGR02323  21 vsf.lypGevlgivGesGsGkstllkalaarlladaGevtyesrsrelellalseaerrlllrtewGlvhqnprGl.rmevsaGanigerll...avgarhy.Gkiraaakwlekveidaari...kpaafsGGmqqrlqiarnlvtrprlvfm.eptGGlvsvqarll..llrglvrelglaviivth..lavarllaqrllvmkqGrvvesG 220
                 vs  + pGe l+++G sGsGk++ll  la+rl ++ G ++      e  ll+l   +  +      G+v q+   l  ++v    + + +l     +g      ++ ++ + l+  +   + i   k +  sGG ++r  +  +lv+rp ++f+ ept Gl +  a  l   lr+  ++ ++ v+   h   + +  l +rll++ +G  v  G
  MMETSP1137-20121227|9683_1  59 VSGaIEPGETLALMGPSGSGKTSLLCVLAGRLPPK-GRLE------EGSLLTLGGVQLTKPFYRRCGFVFQDDLLLaALTVKETIEFAAKLRlpqSLGDEERtRRVEQTLTQLQLNDCADTAIgseKQRGVSGGERKRCAVGVELVSRPPILFLdEPTSGLDAASALSLalSLRKYAKDNEMIVLSSVHqpRSNIFSLFDRLLLLSKGSTVYYG 265
                 454489*************************9885.5443......33455665555444443446*****99855145676666666655311134443320233333345555555555567778999************************9******555554433279***********9999954455556779********998766 PP

>> TIGR01288  nodI: nodulation ABC transporter NodI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.6   0.0   2.7e-14     2e-12      11     217 ..      47     265 ..      39     278 .. 0.76

  Alignments for each domain:
  == domain 1    score: 44.6 bits;  conditional E-value: 2.7e-14
   TIGR01288  11 sksygdkvvvndlsftiaagecfgllgpngagkstiarlvlglisp....degkitvlgepvpararlarakigvvpqfdnldreftvrenllvfgryfgl....streieevipsllefarleskadvrvad.....lsggmkrrltlaralindpqllildepttgldpharhliwerlrsllargktilltthlmeeae..rlcdrlcvleagrkiaeg 217
                 + s   k+v+n +s +i  ge + l+gp g+gk+++  ++ g  +p    +eg +  lg  + ++      + g v q d l   +tv+e +      ++l       e    + + l   +l+  ad+ + +     +sgg ++r ++   l+  p +l ldept+gld  +   +   lr        i+l++     ++   l drl +l +g  +  g
  MMETSP1137-20121227|9683_1  47 KESSKRKLVLNGVSGAIEPGETLALMGPSGSGKTSLLCVLAGRLPPkgrlEEGSLLTLGGVQLTKPF--YRRCGFVFQDDLLLAALTVKETIEF-AAKLRLpqslGDEERTRRVEQTLTQLQLNDCADTAIGSekqrgVSGGERKRCAVGVELVSRPPILFLDEPTSGLDAASALSLALSLRKYAKDNEMIVLSSVHQPRSNifSLFDRLLLLSKGSTVYYG 265
                 5677889***********************************9999443346777777766655544..4578*****************9754.44444421112233334455555556677777766643223339*******************************9998888999999998888888876554444322789999999999887666 PP

>> TIGR02633  xylG: D-xylose ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.4   0.0   2.7e-08     2e-06      16     137 ..      55     173 ..      46     181 .. 0.81
   2 !   17.9   0.0   2.6e-06   0.00019     403     480 ..     181     260 ..     177     264 .. 0.85

  Alignments for each domain:
  == domain 1    score: 24.4 bits;  conditional E-value: 2.7e-08
   TIGR02633  16 aldnidlklraGeivslcGenGaGkstlmkvlsg.vyphGtydGeilfegeelkassirdterkGiviihqeltlvkelsvleniflGneitlkGglmdydamvlrakellrelkldasnvtr 137
                  l++++  +++Ge ++l G  G+Gk++l+ vl+g + p+G  +   l     l   ++ +   +    + q+  l+  l+v e i +  ++ l+   + +++ ++r+++ l +l+l++  +t 
  MMETSP1137-20121227|9683_1  55 VLNGVSGAIEPGETLALMGPSGSGKTSLLCVLAGrLPPKGRLEEGSLLT---LGGVQLTKPFYRRCGFVFQDDLLLAALTVKETIEFAAKLRLPQ-SLGDEERTRRVEQTLTQLQLNDCADTA 173
                 5899999**************************9345788876433332...222233333445566788999999******************9.7889999**************999886 PP

  == domain 2    score: 17.9 bits;  conditional E-value: 2.6e-06
   TIGR02633 403 rlsGGnqqkavlakllllnprvlildeptrGvdvGakyeiyklinqlaqeGvaiivvsse..laevlGlsdrvlvigeGk 480
                 ++sGG++++  +   l+ +p +l ldept G+d  +   +   + + a++   i++ s     ++++ l dr+l++ +G 
  MMETSP1137-20121227|9683_1 181 GVSGGERKRCAVGVELVSRPPILFLDEPTSGLDAASALSLALSLRKYAKDNEMIVLSSVHqpRSNIFSLFDRLLLLSKGS 260
                 589*******************************999999999999998876666555441146899*******999985 PP

>> TIGR03719  ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.0   0.0   0.00016     0.012     333     390 ..      51     107 ..      40     121 .. 0.80
   2 !   30.3   0.0     5e-10   3.6e-08     157     208 ..     177     228 ..     132     264 .. 0.81

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 0.00016
   TIGR03719 333 gdklliddlsfklpkggivGviGpnGaGkstlfklitgkekpdsGelkiGetvklayv 390
                 + kl+++ +s  + +g  + ++Gp G+Gk+ l+ +++g+  p +G+l+ G+ ++l+ v
  MMETSP1137-20121227|9683_1  51 KRKLVLNGVSGAIEPGETLALMGPSGSGKTSLLCVLAGRL-PPKGRLEEGSLLTLGGV 107
                 5678889999999999999999999999999999999875.55788888887777666 PP

  == domain 2    score: 30.3 bits;  conditional E-value: 5e-10
   TIGR03719 157 akveklsGGekrrvalcrlllekPdlllldePtnhldaesvaWlekflkeyk 208
                  k   +sGGe++r a+   l+++P +l+ldePt  lda s   l   l++y+
  MMETSP1137-20121227|9683_1 177 EKQRGVSGGERKRCAVGVELVSRPPILFLDEPTSGLDAASALSLALSLRKYA 228
                 334569***********************************99999999996 PP

>> TIGR01192  chvA: glucan exporter ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.2   0.0   2.4e-13   1.8e-11     352     508 ..      57     218 ..      46     267 .. 0.76

  Alignments for each domain:
  == domain 1    score: 41.2 bits;  conditional E-value: 2.4e-13
   TIGR01192 352 rdvsfeakagqtvaivgptgagkttlinllqrvydpk....sgqil.idgvdiatvtreslrksiatvfqdaglln.rsirenirlgredatdeevveaakaaaasdfiek.rlkg.ydtlvg.ergnrlsggerqrlaiarailknapilvldeatsaldvetea 508
                   vs  +  g+t+a++gp+g+gkt+l+ +l     pk    +g +l + gv    +t+   r+    vfqd  ll   +++e i++  +    + + +  ++   ++ + + +l++  dt +g e+   +sgger+r a+   ++   pil lde ts ld  +  
  MMETSP1137-20121227|9683_1  57 NGVSGAIEPGETLALMGPSGSGKTSLLCVLAGRLPPKgrleEGSLLtLGGV---QLTKPFYRR-CGFVFQDDLLLAaLTVKETIEFAAKLRLPQSLGDEERTRRVEQTLTQlQLNDcADTAIGsEKQRGVSGGERKRCAVGVELVSRPPILFLDEPTSGLDAASAL 218
                 458888999*******************99987777522112333213333...345665555.689***999886269*******99988888888887777766655441555426999994566669*******************************87665 PP

>> TIGR01193  bacteriocin_ABC: ABC-type bacteriocin transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.8   0.0   2.7e-09     2e-07     489     691 ..      55     266 ..      50     273 .. 0.72

  Alignments for each domain:
  == domain 1    score: 27.8 bits;  conditional E-value: 2.7e-09
   TIGR01193 489 vledislkikknekitlvGlsGsGkstlakllvkff....qaesGe.illngkslkdidkhelrqlinylPqePfifsG.silenlllgakenvsqeeikkaveiaeikddieklpl..Gyqtel.seeassisgGqkqrlalarallsdskvlildestsnldlltekkivenllkl.kdktiifva..h..rlsvakksdkiivldeGkiieqGs 691
                 vl+ +s  i+  e+++l+G sGsGk++l  +l +        e+G  ++l+g++   + k   r+   ++ q+ ++++  ++ e + + ak ++ q ++ +  +   +++ + +l+l    +t + se++  +sgG ++r a+   l+s   +l lde ts ld      +   l k  kd  +i ++  h  r ++ +  d+++ l++G  +  Gs
  MMETSP1137-20121227|9683_1  55 VLNGVSGAIEPGETLALMGPSGSGKTSLLCVLAGRLppkgRLEEGSlLTLGGVQ---LTKPFYRR-CGFVFQDDLLLAAlTVKETIEFAAKLRLPQ-SLGDEERTRRVEQTLTQLQLndCADTAIgSEKQRGVSGGERKRCAVGVELVSRPPILFLDEPTSGLDAASALSLALSLRKYaKDNEMIVLSsvHqpRSNIFSLFDRLLLLSKGSTVYYGS 266
                 78999999*************************998332222233313444444...45555555.689999998887636777777777777765.56666667777777777665226899994456778********************************98877776666554245555554322445677888888888888887777666 PP

>> TIGR00954  3a01203: peroxysomal long chain fatty acyl transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.0   7.8e-07   5.7e-05     468     614 ..      55     212 ..      49     254 .. 0.84

  Alignments for each domain:
  == domain 1    score: 19.5 bits;  conditional E-value: 7.8e-07
   TIGR00954 468 lieeLsfevksGnhlLiiGPnGcGKsslfRilgelWPvyg............glltkpeegklFyvPqrPYmslg.tlRdqiiYPdssedfker..glsdkdLeqiLeevkLedllereggwdavqdWkdvLsgGekqRiamARlfyHkPkfavLDEctsAv 614
                 +++ +s  ++ G+ l ++GP G GK sl  +l++  P  g             +ltkp   +  +v q   +    t+++ i +  +    ++   + + + +eq L +++L+d  +  +g +     +  +sgGe++R a+   +  +P    LDE ts +
  MMETSP1137-20121227|9683_1  55 VLNGVSGAIEPGETLALMGPSGSGKTSLLCVLAGRLPPKGrleegslltlggVQLTKPFYRRCGFVFQDDLLLAAlTVKETIEFAAKLRLPQSLgdEERTRRVEQTLTQLQLNDCADTAIGSEK----QRGVSGGERKRCAVGVELVSRPPILFLDEPTSGL 212
                 56677788999***********************9999999*********97789**************9998888******999887655555224566789************999999776....5579**************************9854 PP

>> TIGR01271  CFTR_protein: cystic fibrosis transmembrane conductor regulator (CFTR)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   4.7e-06   0.00035     441     631 ..      55     267 ..      46     272 .. 0.61

  Alignments for each domain:
  == domain 1    score: 15.9 bits;  conditional E-value: 4.7e-06
   TIGR01271 441 vlknislklekgqllavagstgsgkssllmmilgeleps....egkikhsg..........risfspqvswimpg.tikdniifglsydeyr.ytsvikacqleediallaekd...ktvlgeggitlsggqrarislaravykdadlylldspfsyldvvtekeifesclckllanktrilvts....klehlkkadkilllhegscyfygtf 631
                 vl  +s  +e g+ la+ g +gsgk+sll ++ g l p     eg +   g          r  f  q   ++   t+k+ i f       +      ++ ++e+ +++l   d     + +e    +sgg+r r ++   +     + +ld p s ld  +   +    l k   +   i+++s    + + +   d++lll +gs+ +yg+ 
  MMETSP1137-20121227|9683_1  55 VLNGVSGAIEPGETLALMGPSGSGKTSLLCVLAGRLPPKgrleEGSLLTLGgvqltkpfyrRCGFVFQDDLLLAAlTVKETIEFAAKLRLPQsLGDEERTRRVEQTLTQLQLNDcadTAIGSEKQRGVSGGERKRCAVGVELVSRPPILFLDEPTSGLDAASALSLA-LSLRKYAKDNEMIVLSSvhqpRSNIFSLFDRLLLLSKGSTVYYGSV 267
                 88999999***************************988433335655555511111122223344444444443225666666654432211012223444556666665544311033344566678888888888888888888888888888888887776654.4566776666666665521112233455688888888888888876 PP

>> TIGR00957  MRP_assoc_pro: multi drug resistance-associated protein (MRP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.2   0.0   6.1e-05    0.0045     653     795 ..      55     216 ..      46     221 .. 0.74

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 6.1e-05
   TIGR00957 653 tlngltlsipegalvavvgqvgcgkssllsallaem...dkv.egkvalkgsv..........ayvpqqaw.iqndslrenilfgkaleekyy....kavleacalladleilpsgdrteigekgvnlsggqkqrvslaravysdadiyllddplsavdahv 795
                  lng++  i  g  +a++g+ g gk+sll  l + +    ++ eg +   g v           +v q+   +   +++e i f  +l+ ++     + + +    l++l++  + d +   ek   +sgg+++r ++   + s   i +ld+p s +da  
  MMETSP1137-20121227|9683_1  55 VLNGVSGAIEPGETLALMGPSGSGKTSLLCVLAGRLppkGRLeEGSLLTLGGVqltkpfyrrcGFVFQDDLlLAALTVKETIEFAAKLRLPQSlgdeERTRRVEQTLTQLQLNDCADTAIGSEKQRGVSGGERKRCAVGVELVSRPPILFLDEPTSGLDAAS 216
                 68999999999*******************998887322355256665555552222211111466666541456789*******99975543122144555667799999988888776679***********************************9965 PP

>> TIGR00368  TIGR00368: Mg chelatase-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   0.0    0.0012     0.085     206     239 ..      61      94 ..       5     111 .. 0.75

  Alignments for each domain:
  == domain 1    score: 9.2 bits;  conditional E-value: 0.0012
   TIGR00368 206 iaaaGghnllllGPPGsGktllakrlqgllPelt 239
                  a+  g  l l+GP GsGkt l   l g lP+  
  MMETSP1137-20121227|9683_1  61 GAIEPGETLALMGPSGSGKTSLLCVLAGRLPPKG 94 
                 36667899***********************854 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (643 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       268  (0.065334); expected 82.0 (0.02)
Passed bias filter:                      192  (0.0468064); expected 82.0 (0.02)
Passed Vit filter:                       100  (0.0243784); expected 4.1 (0.001)
Passed Fwd filter:                        56  (0.0136519); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              56  [number of targets reported over threshold]
# CPU time: 1.38u 0.21s 00:00:01.59 Elapsed: 00:00:01.28
# Mc/sec: 663.04
//
Query:       MMETSP1137-20121227|9684_1  [L=218]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (218 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        91  (0.0221843); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.16s 00:00:00.37 Elapsed: 00:00:00.32
# Mc/sec: 899.18
//
Query:       MMETSP1137-20121227|9685_1  [L=131]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (131 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       142  (0.0346173); expected 82.0 (0.02)
Passed bias filter:                       96  (0.0234032); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.17s 00:00:00.33 Elapsed: 00:00:00.24
# Mc/sec: 720.44
//
Query:       MMETSP1137-20121227|9686_1  [L=336]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (336 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       152  (0.0370551); expected 82.0 (0.02)
Passed bias filter:                      141  (0.0343735); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.14s 00:00:00.43 Elapsed: 00:00:00.42
# Mc/sec: 1055.91
//
Query:       MMETSP1137-20121227|9687_1  [L=287]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (287 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       395  (0.0962945); expected 82.0 (0.02)
Passed bias filter:                      113  (0.0275475); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         8  (0.00195027); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.18s 00:00:00.64 Elapsed: 00:00:00.51
# Mc/sec: 742.76
//
Query:       MMETSP1137-20121227|9688_1  [L=151]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (151 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        50  (0.0121892); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.12s 00:00:00.28 Elapsed: 00:00:00.67
# Mc/sec: 297.47
//
Query:       MMETSP1137-20121227|9689_1  [L=126]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (126 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        71  (0.0173086); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.11s 00:00:00.26 Elapsed: 00:00:00.38
# Mc/sec: 437.65
//
Query:       MMETSP1137-20121227|9690_1  [L=100]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (100 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        88  (0.0214529); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.13s 00:00:00.27 Elapsed: 00:00:00.34
# Mc/sec: 388.20
//
Query:       MMETSP1137-20121227|9691_1  [L=289]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (289 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        89  (0.0216967); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.17s 00:00:00.41 Elapsed: 00:00:00.89
# Mc/sec: 428.59
//
Query:       MMETSP1137-20121227|9692_1  [L=527]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (527 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       126  (0.0307167); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.16s 00:00:00.51 Elapsed: 00:00:00.37
# Mc/sec: 1879.95
//
Query:       MMETSP1137-20121227|9693_1  [L=208]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.8e-05   22.7   0.0    2.5e-05   22.2   0.0    1.1  1  TIGR03615 RutF: pyrimidine utilization flavin reductase protein F


Domain annotation for each model (and alignments):
>> TIGR03615  RutF: pyrimidine utilization flavin reductase protein F
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.2   0.0     6e-09   2.5e-05      13     136 ..      43     175 ..      38     189 .. 0.78

  Alignments for each domain:
  == domain 1    score: 22.2 bits;  conditional E-value: 6e-09
   TIGR03615  13 laaav.niittdGpaGraGfta.savcsvtdeppt.llvclnrsasvyevlkengtlcvntlaagqeelsnlfGGktpve.erfa....ag.ewetlvtgapvledalvsfdcrisqsvsvGthdilfcevea 136
                 l+aav  ++t dG  G   +   + v  v+ +p     v l r++   + + + +   +  l++ ++++ n++G ++  + +++a    ag   ++++   pvl++a+ +++ + +  +s G hd+ +c++  
  MMETSP1137-20121227|9693_1  43 LSAAVySLLTLDGENGMPNMNImTYVSPVAHAPERwYAVSLLRGTLSRDNFMAANGGVLQVLSERHADVVNVLGKQSGRDvDKLAlldqAGcGTTVVNERWPVLSKAIGCMEVEAVSYHSCGDHDVALCRMIW 175
                 56776369999*****99987526788899999862579999*99888888777777899**************998764377763322220233445568****************************9865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (208 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        71  (0.0173086); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.20u 0.13s 00:00:00.33 Elapsed: 00:00:00.44
# Mc/sec: 623.95
//
Query:       MMETSP1137-20121227|9694_1  [L=107]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (107 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        40  (0.00975134); expected 82.0 (0.02)
Passed bias filter:                       33  (0.00804486); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.15s 00:00:00.29 Elapsed: 00:00:00.31
# Mc/sec: 455.58
//
Query:       MMETSP1137-20121227|9695_1  [L=316]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (316 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        78  (0.0190151); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.15s 00:00:00.40 Elapsed: 00:00:00.42
# Mc/sec: 993.06
//
Query:       MMETSP1137-20121227|9697_1  [L=380]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (380 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        63  (0.0153584); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.15s 00:00:00.41 Elapsed: 00:00:00.61
# Mc/sec: 822.23
//
Query:       MMETSP1137-20121227|9698_1  [L=159]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (159 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        84  (0.0204778); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.15s 00:00:00.32 Elapsed: 00:00:00.36
# Mc/sec: 582.95
//
Query:       MMETSP1137-20121227|9699_1  [L=106]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (106 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        77  (0.0187713); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.13s 00:00:00.27 Elapsed: 00:00:00.28
# Mc/sec: 499.67
//
Query:       MMETSP1137-20121227|9700_1  [L=226]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0067   13.7   0.0        1.5    5.9   0.0    2.2  2  TIGR03167 tRNA_sel_U_synt: tRNA 2-selenouridine synthase


Domain annotation for each model (and alignments):
>> TIGR03167  tRNA_sel_U_synt: tRNA 2-selenouridine synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.9   0.0   0.00038       1.5       3      26 ..     120     143 ..     118     148 .. 0.91
   2 !    5.5   0.0   0.00049         2      92     115 ..     186     209 ..     176     214 .. 0.77

  Alignments for each domain:
  == domain 1    score: 5.9 bits;  conditional E-value: 0.00038
   TIGR03167   3 kpliDvRspaEfaegalpgalnlp 26 
                 + ++D+Rs   f  g++ galn+p
  MMETSP1137-20121227|9700_1 120 HCFLDIRSADAFGAGRVRGALNVP 143
                 6789*******************9 PP

  == domain 2    score: 5.5 bits;  conditional E-value: 0.00049
   TIGR03167  92 awllkeaglevlrleGGYKayRrl 115
                 a+ll++   +++rleGG+ a+R++
  MMETSP1137-20121227|9700_1 186 AVLLRAGYANTVRLEGGFEAWREV 209
                 666655556899**********85 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (226 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        69  (0.0168211); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.22u 0.17s 00:00:00.39 Elapsed: 00:00:00.48
# Mc/sec: 621.45
//
Query:       MMETSP1137-20121227|9701_1  [L=304]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (304 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       184  (0.0448562); expected 82.0 (0.02)
Passed bias filter:                      127  (0.0309605); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.13s 00:00:00.39 Elapsed: 00:00:00.49
# Mc/sec: 818.87
//
Query:       MMETSP1137-20121227|9702_1  [L=792]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (792 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       105  (0.0255973); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.12s 00:00:00.58 Elapsed: 00:00:00.63
# Mc/sec: 1659.29
//
Query:       MMETSP1137-20121227|9703_1  [L=165]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (165 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        68  (0.0165773); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.14s 00:00:00.31 Elapsed: 00:00:00.34
# Mc/sec: 640.54
//
Query:       MMETSP1137-20121227|9704_1  [L=111]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (111 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        40  (0.00975134); expected 82.0 (0.02)
Passed bias filter:                       38  (0.00926377); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.15s 00:00:00.29 Elapsed: 00:00:00.26
# Mc/sec: 563.49
//
Query:       MMETSP1137-20121227|9705_1  [L=48]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (48 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        90  (0.0219405); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.28
# Mc/sec: 226.27
//
Query:       MMETSP1137-20121227|9706_1  [L=734]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.8e-17   58.1  17.1    1.6e-12   44.0   5.8    2.4  3  TIGR02917 PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein
    2.1e-05   20.8   9.0     0.0019   14.3   0.7    2.9  3  TIGR03939 PGA_TPR_OMP: poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA
    0.00021   18.8   4.8     0.0094   13.5   0.0    3.3  3  TIGR02552 LcrH_SycD: type III secretion low calcium response chaperone LcrH/SycD
    0.00022   18.6   2.7       0.13    9.6   0.1    2.7  3  TIGR02521 type_IV_pilW: type IV pilus biogenesis/stability protein PilW


Domain annotation for each model (and alignments):
>> TIGR02917  PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.0   1.0     1e-10   1.1e-07     160     597 ..     116     213 ..      70     221 .. 0.50
   2 !   44.0   5.8   1.5e-15   1.6e-12     475     733 ..     125     383 ..     116     393 .. 0.89
   3 !    5.7   1.7   0.00056      0.57     586     659 ..     304     377 ..     292     440 .. 0.87

  Alignments for each domain:
  == domain 1    score: 28.0 bits;  conditional E-value: 1e-10
   TIGR02917 160 eaklglAqlalaenkldearalvdevLtadpknvdAllLkgdlllssgnieeAlaayrkaielkpnaiaallalatilleegefeeAekkadallkkapnspkaaylkAlvdfqkkkfedAretlqaalksapeylpalllaGaseyqlgeleqAeqylnqilkaaPnshqArrllAaiqLkegkvdeaiatlspalekdsddsallsllGeayLekgdfekAaeylakaseldPenaaaktklgiskLaqGdkseaiadLetAvkldpellraellLilsyLrsgefdkalaaakklekkqpdnaslynllgaiylgkkdlakAreafekALkiepdffpAlanLArldlqekniddAkqrfekvlaidpknlkallaLaelaarkgneeeavallekaaekdpkelepalaLaqyylskgelkkalaileeaadla 597
                 e  l +A  a +++ ++ a+a+  e Lt +p  v++l  +g+++ls g  e+A+  +r ai+ +p++ a +l la++l ++ e + A +++                                                                                                                                                                                                                                                                                                                                                    e+a+ l 
  MMETSP1137-20121227|9706_1 116 EPYLEAAEEAYKNRSYARAKAIHTELLTVSPRLVQSLRRLGEIELSAGRPEAAVPFLRRAIATEPRHLATRLTLANALCAADEWADAISEL----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------EDALRLT 213
                 4444444444444444444444445555555555555444555555555555555555555555555555555555444444444444444....................................................................................................................................................................................................................................................................................................................................................4444444 PP

  == domain 2    score: 44.0 bits;  conditional E-value: 1.5e-15
   TIGR02917 475 ylgkkdlakAreafekALkiepdffpAlanLArldlqekniddAkqrfekvlaidpknlkallaLaelaarkgneeeavallekaaekd...pkele.palaLaqyylskgelkkalaileeaadlapdspellellgraqlaakdlkkavesfkkllelqpdsalalllladvyavaknkakAltslkkaLelkpdnteaqlllaqLlleekrleeAlkllkelekqkpkaalgfeleGdlalrqkdykaAiqaykkalkra 733
                 + +++ +a+A++   + L + p  +++l  L +++l+++++++A+  + +++a++p +l++ l La+   +  + ++a++ le a ++    +k+++   ++L++++ ++g+  k+ ail  a++   + p  l + g+a +a ++  +a++ +  l+  q+ + ++ +lla+      + ++A++sl++ L  k +   a    a    +   ++eA++l+k + +  p +a     + ++     +y++A++a++++ +++
  MMETSP1137-20121227|9706_1 125 AYKNRSYARAKAIHTELLTVSPRLVQSLRRLGEIELSAGRPEAAVPFLRRAIATEPRHLATRLTLANALCAADEWADAISELEDALRLTadgSKAYKrVNVELGRALFKSGQQSKGGAILMAALKQDMEDPLTLRAYGEACIALGQTSDAMQIYLRLMVKQSSNKEICALLAKTF----KLPGAIESLRSQLPFKAESASALAFIATTIKDHSAIDEAIELYKAVVALVPTSASYALNLVHTLEIPLRYAEALAAVRAFCEAN 383
                 678999***************************************************************9***************87641113333314578***********************************************************************99....99*******************************************999999888877666666666677777777777776665 PP

  == domain 3    score: 5.7 bits;  conditional E-value: 0.00056
   TIGR02917 586 alaileeaadlapdspellellgraqlaakdlkkavesfkkllelqpdsalalllladvyavaknkakAltslk 659
                 a++ l++ +  +++s+++l+ ++++ +  +  ++a+e +k +++l p sa   l l +  +    +a+Al +++
  MMETSP1137-20121227|9706_1 304 AIESLRSQLPFKAESASALAFIATTIKDHSAIDEAIELYKAVVALVPTSASYALNLVHTLEIPLRYAEALAAVR 377
                 78888888888999999999999999999999999999999999999999999999888888888888777665 PP

>> TIGR03939  PGA_TPR_OMP: poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.7   1.9e-06    0.0019      88     193 ..     118     222 ..     110     234 .. 0.88
   2 ?    0.2   0.0     0.033        34     314     345 ..     259     290 ..     255     304 .. 0.76
   3 !    9.0   0.9   7.2e-05     0.074      77     151 ..     309     384 ..     269     445 .. 0.85

  Alignments for each domain:
  == domain 1    score: 14.3 bits;  conditional E-value: 1.9e-06
   TIGR03939  88 elealAkAaRnekqwdkAlelyrkllqrdPknpdlllGlaltladagkdeeAlkalkelkerfpsdaerlealaYvlraaedsldalaaiqqalrlePdnkellke 193
                  lea+ +A+ n ++++ A ++  +ll  +P+  + l  l  +++ ag++e A   l+++ +++p++ +++ +la +l aa++++da++ +++alrl +d ++++k+
  MMETSP1137-20121227|9706_1 118 YLEAAEEAYKN-RSYARAKAIHTELLTVSPRLVQSLRRLGEIELSAGRPEAAVPFLRRAIATEPRHLATRLTLANALCAADEWADAISELEDALRLTADGSKAYKR 222
                 57888888877.5899999999999999999999999999999999999999999999999999999999999999999999999999999999999998877765 PP

  == domain 2    score: 0.2 bits;  conditional E-value: 0.033
   TIGR03939 314 eavAdaylalrqpekAlslyrelaqaepaknn 345
                 +a++ a +al+q + A ++y +l+ +++++++
  MMETSP1137-20121227|9706_1 259 RAYGEACIALGQTSDAMQIYLRLMVKQSSNKE 290
                 79999999999999999999888777777653 PP

  == domain 3    score: 9.0 bits;  conditional E-value: 7.2e-05
   TIGR03939  77 ery.slvglparelealAkAaRnekqwdkAlelyrkllqrdPknpdlllGlaltladagkdeeAlkalkelkerfp 151
                 +++  +++ +a++l+ +A  + +    d+A+ely+ +    P+++++ l l++tl    +++eAl+a++++ e+++
  MMETSP1137-20121227|9706_1 309 RSQlPFKAESASALAFIATTIKDHSAIDEAIELYKAVVALVPTSASYALNLVHTLEIPLRYAEALAAVRAFCEANA 384
                 44447788899*******************************************************9999887665 PP

>> TIGR02552  LcrH_SycD: type III secretion low calcium response chaperone LcrH/SycD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   0.0   9.1e-06    0.0094       8     120 ..     105     217 ..     100     230 .. 0.90
   2 ?    1.9   0.0     0.036        37      75     119 ..     244     289 ..     221     300 .. 0.69
   3 ?    3.6   0.2      0.01        11      31      74 ..     332     375 ..     306     388 .. 0.75

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 9.1e-06
   TIGR02552   8 ksllgldeeqleaiYalAYnlyqqgkyeeAeklFqlLaaldpteakywlgLaaclqalkeyeeAiaaYalaaaldlddprpvyhaaecllalgekeeAlkaLklaieiaeeke 120
                  ++ g d  +le   ++A ++y++  y++A+ + + L ++ p   + + +L++    +++ e A+ +  +a a ++ + +  + +a+ l a +e ++A + L+ a+++ ++ +
  MMETSP1137-20121227|9706_1 105 SQSAGTDLAALEPYLEAAEEAYKNRSYARAKAIHTELLTVSPRLVQSLRRLGEIELSAGRPEAAVPFLRRAIATEPRHLATRLTLANALCAADEWADAISELEDALRLTADGS 217
                 56667777888888899999***************************************************************************************998644 PP

  == domain 2    score: 1.9 bits;  conditional E-value: 0.036
   TIGR02552  75 YalaaaldlddprpvyhaaecllalgekeeAlka.Lklaieiaeek 119
                   +a++ d++dp  + + +e  +alg++ +A++  L+l ++ + +k
  MMETSP1137-20121227|9706_1 244 LMAALKQDMEDPLTLRAYGEACIALGQTSDAMQIyLRLMVKQSSNK 289
                 5567778888999999999999999999999875244444444444 PP

  == domain 3    score: 3.6 bits;  conditional E-value: 0.01
   TIGR02552  31 qgkyeeAeklFqlLaaldpteakywlgLaaclqalkeyeeAiaa 74 
                 +   +eA +l+++ +al pt+a y+l L  +l    +y+eA+aa
  MMETSP1137-20121227|9706_1 332 HSAIDEAIELYKAVVALVPTSASYALNLVHTLEIPLRYAEALAA 375
                 55667888888888888888899988888888888888888765 PP

>> TIGR02521  type_IV_pilW: type IV pilus biogenesis/stability protein PilW
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.5   0.1    0.0011       1.1     146     226 ..     126     207 ..     114     215 .. 0.61
   2 !    9.6   0.1   0.00012      0.13      28      92 ..     218     282 ..     212     292 .. 0.86
   3 ?   -1.3   0.0      0.27   2.8e+02      50     100 ..     304     354 ..     297     362 .. 0.74

  Alignments for each domain:
  == domain 1    score: 6.5 bits;  conditional E-value: 0.0011
   TIGR02521 146 lkagdtekaekyltralkidpkrpesllelaelklkkgqyaeAralleryqqtv.eqtaesLwLgiriakalgdaaaakeye 226
                 +k    ++a++  t++l + p+  +sl+ l e++l++g+  +A  +l r  +t   + a  L+L+  + +a + a+a  e+e
  MMETSP1137-20121227|9706_1 126 YKNRSYARAKAIHTELLTVSPRLVQSLRRLGEIELSAGRPEAAVPFLRRAIATEpRHLATRLTLANALCAADEWADAISELE 207
                 5556666666666777777777777777777777777777777777766666653444555666655555555555555555 PP

  == domain 2    score: 9.6 bits;  conditional E-value: 0.00012
   TIGR02521  28 ekaakirvqLaleYleqgdlekAkenlekAleldpkdadanlalAlyyqqlgelekAeesfrkAl 92 
                 ++  +++v+L+ + +++g+  k  + l  Al++d +d  +  a + +   lg+++ A + + + +
  MMETSP1137-20121227|9706_1 218 KAYKRVNVELGRALFKSGQQSKGGAILMAALKQDMEDPLTLRAYGEACIALGQTSDAMQIYLRLM 282
                 5567899***************************************************9997755 PP

  == domain 3    score: -1.3 bits;  conditional E-value: 0.27
   TIGR02521  50 AkenlekAleldpkdadanlalAlyyqqlgelekAeesfrkAltlkpnngd 100
                 A e+l   l  ++++a+a + +A   ++    ++A e ++  ++l p +++
  MMETSP1137-20121227|9706_1 304 AIESLRSQLPFKAESASALAFIATTIKDHSAIDEAIELYKAVVALVPTSAS 354
                 667777777777777777777777777777888888888888888777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (734 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       160  (0.0390054); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.61u 0.17s 00:00:00.78 Elapsed: 00:00:01.11
# Mc/sec: 872.79
//
Query:       MMETSP1137-20121227|9707_1  [L=60]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        29  (0.00706972); expected 82.0 (0.02)
Passed bias filter:                       28  (0.00682594); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.31
# Mc/sec: 255.46
//
Query:       MMETSP1137-20121227|9708_1  [L=357]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.022   12.8   0.3      0.067   11.3   0.0    1.8  2  TIGR02464 ribofla_fusion: conserved hypothetical protein


Domain annotation for each model (and alignments):
>> TIGR02464  ribofla_fusion: conserved hypothetical protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0      0.32   1.3e+03      66      90 ..     159     183 ..     148     192 .. 0.74
   2 ?   11.3   0.0   1.6e-05     0.067      65     104 ..     242     281 ..     228     288 .. 0.84

  Alignments for each domain:
  == domain 1    score: -2.6 bits;  conditional E-value: 0.32
   TIGR02464  66 rkvkkfkekqWdkvkeevmveavla 90 
                 r++   ++ +W+++  +v++  +l+
  MMETSP1137-20121227|9708_1 159 RTRVCSERVNWSSNEDAVIRAMILQ 183
                 5555567788999988888776655 PP

  == domain 2    score: 11.3 bits;  conditional E-value: 1.6e-05
   TIGR02464  65 grkvkkfkekqWdkvkeevmveavlaKFstsedlrelLls 104
                     +++++++W+k+  ev+++a  +K +t +++ +lL  
  MMETSP1137-20121227|9708_1 242 LTASSNEDRSNWNKEEDEVVMNAYRKKRRTWRNIAQLLPG 281
                 55678899************************99999865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (357 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        88  (0.0214529); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.26u 0.17s 00:00:00.43 Elapsed: 00:00:00.43
# Mc/sec: 1095.82
//
Query:       MMETSP1137-20121227|9712_1  [L=202]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (202 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       130  (0.0316919); expected 82.0 (0.02)
Passed bias filter:                       98  (0.0238908); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.14s 00:00:00.33 Elapsed: 00:00:00.34
# Mc/sec: 784.17
//
Query:       MMETSP1137-20121227|9713_1  [L=222]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (222 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        59  (0.0143832); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.14s 00:00:00.32 Elapsed: 00:00:00.32
# Mc/sec: 915.67
//
Query:       MMETSP1137-20121227|9714_1  [L=189]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (189 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        72  (0.0175524); expected 82.0 (0.02)
Passed bias filter:                       39  (0.00950756); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.15s 00:00:00.34 Elapsed: 00:00:00.24
# Mc/sec: 1039.41
//
Query:       MMETSP1137-20121227|9715_1  [L=245]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (245 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       263  (0.0641151); expected 82.0 (0.02)
Passed bias filter:                      155  (0.0377864); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.18s 00:00:00.42 Elapsed: 00:00:00.37
# Mc/sec: 873.98
//
Query:       MMETSP1137-20121227|9716_1  [L=199]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.9e-15   54.6   0.0    3.6e-15   54.3   0.0    1.1  1  TIGR01130 ER_PDI_fam: protein disulfide isomerases
    5.7e-15   53.4   0.0    1.2e-14   52.3   0.0    1.5  1  TIGR01126 pdi_dom: protein disulfide-isomerase domain
     0.0024   15.9   0.0     0.0044   15.0   0.0    1.4  1  TIGR01068 thioredoxin: thioredoxin


Domain annotation for each model (and alignments):
>> TIGR01130  ER_PDI_fam: protein disulfide isomerases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.3   0.0   2.7e-18   3.6e-15     350     461 ..      30     157 ..      21     173 .. 0.83

  Alignments for each domain:
  == domain 1    score: 54.3 bits;  conditional E-value: 2.7e-18
   TIGR01130 350 vVgknfdeivldetKdVLvefYApWCGHCkkLapiYeelaekykkeedvviakldata..Ndvpe.fevegFPTilfvpagkksepvkyegdRtledlvkFikknatielegkk.............e 461
                 +  +nf+e+v d+ K  +v+f Ap     +  +    +l+++yk+   v+i   d t    ++ +  ev+g+PTi+++ a++  +  +y+g R+ ++l+ F+++n ++++  ++             +
  MMETSP1137-20121227|9716_1  30 LTQENFKELVTDSGKGAFVKFLAPXVRPLQVDEASLGQLGDEYKDSTTVLIGDADCTStgKELCDaNEVRGYPTIKYFSAETGPKGADYSGARSFQALKTFVDENLEVKCTLDNldgcsdkekefmeK 157
                 5679**********************999999*************88****9999876225666679****************************************999888877777655444331 PP

>> TIGR01126  pdi_dom: protein disulfide-isomerase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.3   0.0   8.7e-18   1.2e-14       1     104 [.      30     134 ..      30     135 .. 0.92

  Alignments for each domain:
  == domain 1    score: 52.3 bits;  conditional E-value: 8.7e-18
   TIGR01126   1 lvaenfdelvldenkdvlvefyaPWCGhCkklaPeyeklakelkkeeekvkiakvdatae.kelaskfkvsgfPtlkffkkgkk.epvdyeGeReaeelvefveek 104
                 l++enf+elv+d+ k ++v+f aP     +  +    +l++e+k+++ +v i++ d+t+  kel++  +v+g+Pt+k+f++++  +  dy+G+R+ ++l  fv+e+
  MMETSP1137-20121227|9716_1  30 LTQENFKELVTDSGKGAFVKFLAPXVRPLQVDEASLGQLGDEYKDST-TVLIGDADCTSTgKELCDANEVRGYPTIKYFSAETGpKGADYSGARSFQALKTFVDEN 134
                 689***********************9999999***********876.8*********987899***************988751589***************985 PP

>> TIGR01068  thioredoxin: thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   3.2e-06    0.0044       2     100 ..      31     134 ..      30     135 .. 0.86

  Alignments for each domain:
  == domain 1    score: 15.0 bits;  conditional E-value: 3.2e-06
   TIGR01068   2 seenfeetvassdklvlvDfwAeWCgpCkmlaPvleelakeleekvkvvKlnvd...eeqeiaakygirsiPtlllf..kngkevkrvvGakpkaalkeliekl 100
                 ++enf+e v++s k + v f A+   p ++    l +l +e++++ +v+  + d   + +e+  + ++r  Pt+  f  + g + +   Ga + +alk++++++
  MMETSP1137-20121227|9716_1  31 TQENFKELVTDSGKGAFVKFLAPXVRPLQVDEASLGQLGDEYKDSTTVLIGDADctsTGKELCDANEVRGYPTIKYFsaETGPKGADYSGARSFQALKTFVDEN 134
                 789****************************************99988887777222457899***********998334677888899999999999998875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (199 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       143  (0.034861); expected 82.0 (0.02)
Passed bias filter:                      131  (0.0319356); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.21u 0.16s 00:00:00.37 Elapsed: 00:00:00.28
# Mc/sec: 905.72
//
Query:       MMETSP1137-20121227|9717_1  [L=255]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (255 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        91  (0.0221843); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.18s 00:00:00.41 Elapsed: 00:00:00.40
# Mc/sec: 841.43
//
Query:       MMETSP1137-20121227|9718_1  [L=202]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (202 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        62  (0.0151146); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.17s 00:00:00.36 Elapsed: 00:00:00.28
# Mc/sec: 952.21
//
Query:       MMETSP1137-20121227|9719_1  [L=86]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (86 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        42  (0.0102389); expected 82.0 (0.02)
Passed bias filter:                       40  (0.00975134); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.12s 00:00:00.26 Elapsed: 00:00:00.27
# Mc/sec: 420.41
//
Query:       MMETSP1137-20121227|9720_1  [L=281]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (281 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        39  (0.00950756); expected 82.0 (0.02)
Passed bias filter:                       38  (0.00926377); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.14s 00:00:00.36 Elapsed: 00:00:00.31
# Mc/sec: 1196.42
//
Query:       MMETSP1137-20121227|9721_1  [L=57]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        32  (0.00780107); expected 82.0 (0.02)
Passed bias filter:                       31  (0.00755729); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.18s 00:00:00.31 Elapsed: 00:00:00.78
# Mc/sec: 96.45
//
Query:       MMETSP1137-20121227|9723_1  [L=140]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (140 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       102  (0.0248659); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.16s 00:00:00.33 Elapsed: 00:00:00.32
# Mc/sec: 577.45
//
Query:       MMETSP1137-20121227|9724_1  [L=283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.023   11.8   0.0      0.039   11.1   0.0    1.3  1  TIGR00782 ccoP: cytochrome c oxidase, cbb3-type, subunit III


Domain annotation for each model (and alignments):
>> TIGR00782  ccoP: cytochrome c oxidase, cbb3-type, subunit III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   9.6e-06     0.039     197     219 ..      65      87 ..      58      98 .. 0.91

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 9.6e-06
   TIGR00782 197 pkdealaakGkelFadnCvsChg 219
                 ++d+a + +G++++ + C+sChg
  MMETSP1137-20121227|9724_1  65 SYDAASIRRGHQVYTQVCASCHG 87 
                 68999*****************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (283 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       103  (0.0251097); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.23u 0.17s 00:00:00.40 Elapsed: 00:00:00.41
# Mc/sec: 911.05
//
Query:       MMETSP1137-20121227|9725_1  [L=395]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (395 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       163  (0.0397367); expected 82.0 (0.02)
Passed bias filter:                      106  (0.0258411); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.16s 00:00:00.46 Elapsed: 00:00:00.44
# Mc/sec: 1184.90
//
Query:       MMETSP1137-20121227|9726_1  [L=116]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (116 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       145  (0.0353486); expected 82.0 (0.02)
Passed bias filter:                       96  (0.0234032); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.11s 00:00:00.27 Elapsed: 00:00:00.32
# Mc/sec: 478.46
//
Query:       MMETSP1137-20121227|9727_1  [L=222]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (222 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        93  (0.0226719); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.11s 00:00:00.31 Elapsed: 00:00:00.45
# Mc/sec: 651.15
//
Query:       MMETSP1137-20121227|9728_1  [L=425]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.34    7.9  14.4       0.11    9.6   6.0    2.7  2  TIGR04091 LTA_dltB: D-alanyl-lipoteichoic acid biosynthesis protein DltB


Domain annotation for each model (and alignments):
>> TIGR04091  LTA_dltB: D-alanyl-lipoteichoic acid biosynthesis protein DltB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   6.0   2.6e-05      0.11     115     330 ..     103     312 ..       6     322 .. 0.73
   2 ?   -0.8   0.2     0.035   1.4e+02     260     271 ..     370     381 ..     360     387 .. 0.86

  Alignments for each domain:
  == domain 1    score: 9.6 bits;  conditional E-value: 2.6e-05
   TIGR04091 115 YltFkavqiileirDglikelklveflkfllffptissGPiDRyrRFekdl...kkvlereeylellekgikkillGllykfilaylietllleklekeallllellaymYayslylfFDFAGYslfavgvsyllGiktPenFnkPflskdi..kdFWnRWhisLsfWfrDfvfmRlvllllkkklfknrlttssvaylinmllmGiWHGltl.yyivYGly 330
                  lt k + i ++ +Dg + + +++ +l++l  f  + +GP  R+  +e+ l   ++   r++    +++++ + ++ +     +a+++    +   +  +++ll+ ++y+Y+  +++ + F    l+  +v+ l+G +   n +       i   ++ n W+ s+ +++ D+v+ R+                  + +l ++l+   WHG++  yy+ +G  
  MMETSP1137-20121227|9728_1 103 ILTLKLMSIGFDSQDGKLSSRSPILILQYLFCFNGMLTGPFYRFTAWEEVLvlpRTGHVRKSPPGAVARALARTIAAVAIWRGVAVFLPFSAVYDPSFGKATLLYRCMYAYLSCFQFRYRFYACWLLMEAVGLLVGHEDASNVQVLQCELAIvpSQYVNAWNTSVQRFLVDYVYRRVPACQR------------AARQLCTFLFSAYWHGIHAgYYLFFGGI 312
                 4899****************************************9998876111222334444456666666555444433334444443333333344446666666777777777777766668888999**********99766655553379******************99865432............2335667777788888876355666644 PP

  == domain 2    score: -0.8 bits;  conditional E-value: 0.035
   TIGR04091 260 skdikdFWnRWh 271
                 ++di+d W+R+h
  MMETSP1137-20121227|9728_1 370 TRDIQDMWERFH 381
                 689********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (425 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       159  (0.0387616); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.31u 0.13s 00:00:00.44 Elapsed: 00:00:00.56
# Mc/sec: 984.13
//
Query:       MMETSP1137-20121227|9730_1  [L=198]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (198 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        35  (0.00853242); expected 82.0 (0.02)
Passed bias filter:                       34  (0.00828864); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.14s 00:00:00.32 Elapsed: 00:00:00.32
# Mc/sec: 816.68
//
Query:       MMETSP1137-20121227|9731_1  [L=124]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.2e-37  127.0   0.0    2.4e-37  126.9   0.0    1.0  1  TIGR00501 met_pdase_II: methionine aminopeptidase, type II
    2.6e-14   50.5   0.0    2.9e-14   50.4   0.0    1.0  1  TIGR00495 crvDNA_42K: DNA-binding protein, 42 kDa


Domain annotation for each model (and alignments):
>> TIGR00501  met_pdase_II: methionine aminopeptidase, type II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  126.9   0.0   1.2e-40   2.4e-37     180     295 .]       2     120 ..       1     120 [. 0.95

  Alignments for each domain:
  == domain 1    score: 126.9 bits;  conditional E-value: 1.2e-40
   TIGR00501 180 eeGevlaiepfatdGvGlvtdggeveiykllae...rpvrlksarklLkkieenyktLPfakrylekledeklllalnkLvregviqdypvLkeksgslvaqfehtilveedgaevvtk 295
                 eeGev aie+f+++G G+v++  e+++y    +    p+rl++a++lL  i++n++tL f++r+++++++ek+llal++L  +g++q+yp+L +++gs+vaq+eht++++  ++ev++k
  MMETSP1137-20121227|9731_1   2 EEGEVYAIETFGSTGKGYVKEDLECSHYMKNFDvghIPLRLPRAKQLLSFINKNFDTLAFCRRWIDRAGEEKYLLALRNLCDNGIVQPYPPLVDIKGSYVAQYEHTLILRPTQKEVLSK 120
                 8***************************8765544479******************************************************************************987 PP

>> TIGR00495  crvDNA_42K: DNA-binding protein, 42 kDa
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.4   0.0   1.4e-17   2.9e-14     218     333 ..       2     119 ..       1     123 [. 0.89

  Alignments for each domain:
  == domain 1    score: 50.4 bits;  conditional E-value: 1.4e-17
   TIGR00495 218 eenevyavdilvstgeGkakeederttiykkdedk.tyklklkasrkviseikkrfsalPftlrnled..ekrarlGlvecvehkllqpyevlydkeGeivaqfkftvlllpnGsirlt 333
                 ee+evya++   stg+G +ke  e    y k+ d+ +  l+l  ++++ s i+k+f++l f  r ++   e++  l l ++ + +++qpy+ l d +G+ vaq++ t++l p  ++ l+
  MMETSP1137-20121227|9731_1   2 EEGEVYAIETFGSTGKGYVKEDLE-CSHYMKNFDVgHIPLRLPRAKQLLSFINKNFDTLAFCRRWIDRagEEKYLLALRNLCDNGIVQPYPPLVDIKGSYVAQYEHTLILRPTQKEVLS 119
                 89*****************98655.66788888872567***************************964478888***********************************998877766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (124 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        61  (0.0148708); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.15u 0.15s 00:00:00.30 Elapsed: 00:00:00.46
# Mc/sec: 355.80
//
Query:       MMETSP1137-20121227|9732_1  [L=132]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (132 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       457  (0.111409); expected 82.0 (0.02)
Passed bias filter:                      124  (0.0302292); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.14s 00:00:00.31 Elapsed: 00:00:00.35
# Mc/sec: 497.79
//
Query:       MMETSP1137-20121227|9733_1  [L=278]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (278 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       142  (0.0346173); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.15s 00:00:00.40 Elapsed: 00:00:00.39
# Mc/sec: 940.85
//
Query:       MMETSP1137-20121227|9735_1  [L=119]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (119 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        35  (0.00853242); expected 82.0 (0.02)
Passed bias filter:                       33  (0.00804486); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.16s 00:00:00.31 Elapsed: 00:00:00.28
# Mc/sec: 560.95
//
Query:       MMETSP1137-20121227|9736_1  [L=196]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00017   19.2   0.0    0.00028   18.5   0.0    1.4  1  TIGR00231 small_GTP: small GTP-binding protein domain


Domain annotation for each model (and alignments):
>> TIGR00231  small_GTP: small GTP-binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.0   6.8e-08   0.00028       4      97 ..       6     105 ..       3     129 .. 0.78

  Alignments for each domain:
  == domain 1    score: 18.5 bits;  conditional E-value: 6.8e-08
   TIGR00231   4 ikivivGhvdvGKstLlnsllknkisi..teskpgvtrdyvteqieedGkt.....ykvnllDTaGqedfdairrlyvreverslevvdivilvldveegl 97 
                  k+v +G   +GK+   n+ ++ +  +  + ++p+ +  + +    ++G       +k++l+D  G +++++ +++ +r ++++l v+d +i   + ++++
  MMETSP1137-20121227|9736_1   6 LKLVTMGPQRCGKTRVANYVAQFDETPnlDVYNPTCGVRILEFEKNVRGAGgrsiqVKAELWDCSGDKKYENCWPAILRGASGVLLVYDPTIK-TQEKDIE 105
                 58899999999999999998876655511456668888888876677775477777*********************************9998.6666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (196 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       113  (0.0275475); expected 82.0 (0.02)
Passed bias filter:                      109  (0.0265724); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.20u 0.11s 00:00:00.31 Elapsed: 00:00:00.32
# Mc/sec: 808.43
//
Query:       MMETSP1137-20121227|9737_1  [L=184]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (184 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       183  (0.0446124); expected 82.0 (0.02)
Passed bias filter:                      142  (0.0346173); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.19s 00:00:00.39 Elapsed: 00:00:00.56
# Mc/sec: 426.07
//
Query:       MMETSP1137-20121227|9738_1  [L=442]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.8e-53  177.9   0.0    6.3e-53  177.5   0.0    1.2  1  TIGR03592 yidC_oxa1_cterm: membrane protein insertase, YidC/Oxa1 family


Domain annotation for each model (and alignments):
>> TIGR03592  yidC_oxa1_cterm: membrane protein insertase, YidC/Oxa1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  177.5   0.0   1.5e-56   6.3e-53       1     190 [.     106     316 ..     106     317 .. 0.90

  Alignments for each domain:
  == domain 1    score: 177.5 bits;  conditional E-value: 1.5e-56
   TIGR03592   1 syglaIilltlvirllllplsakqiksmrkmqelqpklkeiqekyk.edrqklqqemmklykeegvnplaGcLPlLiQmPillaLyavllrsielr..kapflwiedlsspdptveatialla................iyilpvlaglttflqqklsapkpadpa..qqkimlyimpvmflfmflffpaglllYwvvsnlftilqqliin 190
                 syg aIil+t+ +++l++pl+ +qi+s++kmq+++p  k++qek +  d+++l+qe++kly e+ vnplaGcLP L Q+P++++Ly+ ll+  +     +pflw+ +l+ p +  +  i  l+                + +lp+l+++++++++ l +pk+ dpa  q +++l+++p+m+ +++l++p+gl lYw+++n++t++ +l+i+
  MMETSP1137-20121227|9738_1 106 SYGPAIILFTIGVKALTFPLTKQQIESTTKMQAIAPAAKALQEKXRdRDPARLNQELQKLYTENSVNPLAGCLPALAQIPLFIGLYRSLLNLAKADalAEPFLWLPSLEGPVADYQEGIGWLTdwvngapkfgwsdtiaYLVLPILLVISQYASTALLTPKTDDPAqqQSQAILKFLPLMIGWFSLNVPSGLGLYWLTNNFLTTASTLWIR 316
                 6999*****************************************9789****************************************6665532239****988888888877777777778888888888777765669***************9888877665588999**********************************9997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (442 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       103  (0.0251097); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.32u 0.16s 00:00:00.48 Elapsed: 00:00:00.43
# Mc/sec: 1356.73
//
Query:       MMETSP1137-20121227|9739_1  [L=394]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (394 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        99  (0.0241346); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.14s 00:00:00.43 Elapsed: 00:00:00.56
# Mc/sec: 912.35
//
Query:       MMETSP1137-20121227|9741_1  [L=669]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (669 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        83  (0.020234); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.14s 00:00:00.55 Elapsed: 00:00:00.60
# Mc/sec: 1471.68
//
Query:       MMETSP1137-20121227|9743_1  [L=63]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (63 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        45  (0.0109703); expected 82.0 (0.02)
Passed bias filter:                       42  (0.0102389); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.17s 00:00:00.29 Elapsed: 00:00:00.33
# Mc/sec: 251.98
//
Query:       MMETSP1137-20121227|9744_1  [L=248]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (248 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       169  (0.0411994); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.16s 00:00:00.38 Elapsed: 00:00:00.34
# Mc/sec: 962.74
//
Query:       MMETSP1137-20121227|9746_1  [L=217]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        4.2    2.7   8.0        4.7    2.5   5.6    1.0  1  TIGR00927 2A1904: K+-dependent Na+/Ca+ exchanger


Domain annotation for each model (and alignments):
>> TIGR00927  2A1904: K+-dependent Na+/Ca+ exchanger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   5.6    0.0011       4.7     963    1002 ..      53      92 ..      10     111 .. 0.60

  Alignments for each domain:
  == domain 1    score: 2.5 bits;  conditional E-value: 0.0011
   TIGR00927  963 kGvdgeggsdGGdseeeeeeeeeeeeeeeeeeeeeeeeee 1002
                  +G d++g  dG   +e ++e ee  +eee   ee  ee +
  MMETSP1137-20121227|9746_1   53 DGDDDGGYDDGPAGDEYDDEPEELMDEEEAAGEEGGEEGQ 92  
                  4555555555555555455555533444433343333332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (217 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        45  (0.0109703); expected 82.0 (0.02)
Passed bias filter:                       38  (0.00926377); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.21u 0.17s 00:00:00.38 Elapsed: 00:00:00.43
# Mc/sec: 666.08
//
Query:       MMETSP1137-20121227|9748_1  [L=272]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (272 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       100  (0.0243784); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.12s 00:00:00.35 Elapsed: 00:00:00.30
# Mc/sec: 1196.70
//
Query:       MMETSP1137-20121227|9749_1  [L=322]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (322 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        96  (0.0234032); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.16s 00:00:00.40 Elapsed: 00:00:00.34
# Mc/sec: 1250.01
//
Query:       MMETSP1137-20121227|9750_1  [L=60]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        40  (0.00975134); expected 82.0 (0.02)
Passed bias filter:                       40  (0.00975134); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.15s 00:00:00.28 Elapsed: 00:00:00.41
# Mc/sec: 193.15
//
Query:       MMETSP1137-20121227|9752_1  [L=59]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (59 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        27  (0.00658216); expected 82.0 (0.02)
Passed bias filter:                       26  (0.00633837); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.12s 00:00:00.24 Elapsed: 00:00:00.24
# Mc/sec: 324.47
//
Query:       MMETSP1137-20121227|9752_2  [L=59]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (59 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        48  (0.0117016); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.28
# Mc/sec: 278.12
//
Query:       MMETSP1137-20121227|9753_1  [L=152]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (152 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        65  (0.0158459); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.13s 00:00:00.29 Elapsed: 00:00:00.35
# Mc/sec: 573.21
//
Query:       MMETSP1137-20121227|9754_1  [L=163]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0002   18.6   0.0    0.00022   18.5   0.0    1.3  1  TIGR03516 ppisom_GldI: peptidyl-prolyl isomerase, gliding motility-associated


Domain annotation for each model (and alignments):
>> TIGR03516  ppisom_GldI: peptidyl-prolyl isomerase, gliding motility-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.0   5.3e-08   0.00022     122     175 ..     101     154 ..      24     156 .. 0.86

  Alignments for each domain:
  == domain 1    score: 18.5 bits;  conditional E-value: 5.3e-08
   TIGR03516 122 edlisGlrdglklmkegeevtfllPsykayGyyGdedkigsnlpikstvtllni 175
                 +++i+G  +++++m+eg++  +++Ps  ayG     + i +   ++ t+ l ++
  MMETSP1137-20121227|9754_1 101 NQVIKGWTEAMQMMHEGDKWELYIPSELAYGDRPRGQYIKAGDVLIFTLELIKV 154
                 689****************************88777777777777777776665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (163 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       118  (0.0287665); expected 82.0 (0.02)
Passed bias filter:                      116  (0.0282789); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.20u 0.15s 00:00:00.35 Elapsed: 00:00:00.35
# Mc/sec: 614.69
//
Query:       MMETSP1137-20121227|9755_1  [L=93]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.1e-37  124.2   7.8    4.8e-37  124.0   5.4    1.0  1  TIGR00280 L37a: ribosomal protein L37a
  ------ inclusion threshold ------
      0.051   11.7   1.4      0.076   11.1   0.1    1.8  2  TIGR04129 CxxH_BA5709: CxxH/CxxC protein, BA_5709 family


Domain annotation for each model (and alignments):
>> TIGR00280  L37a: ribosomal protein L37a
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  124.0   5.4   2.3e-40   4.8e-37       3      90 ..       4      91 ..       2      93 .] 0.97

  Alignments for each domain:
  == domain 1    score: 124.0 bits;  conditional E-value: 2.3e-40
   TIGR00280  3 krtkkvgitGrfGpryGlkvrravkkieikqkkkykCkvCgkkavkrestgiWkCrkCgakvaGGaytpvtaagktvekairriverk 90
                krtkk gitG++G+ryG ++r++vkkiei q+ +y+C++Cgk avkr+  giW C+ C+++ aGGayt  ta ++ v+++irr++e  
  MMETSP1137-20121227|9755_1  4 KRTKKAGITGKYGVRYGASLRKQVKKIEISQHSRYTCSFCGKDAVKRSVVGIWACSACKKVTAGGAYTLHTAQAAQVRSTIRRLREGT 91
                8************************************************************************************975 PP

>> TIGR04129  CxxH_BA5709: CxxH/CxxC protein, BA_5709 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.1   3.7e-05     0.076      25      46 ..      27      48 ..      26      48 .. 0.88
   2 ?   -1.4   0.1       0.3   6.1e+02      37      43 ..      57      63 ..      56      65 .. 0.82

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 3.7e-05
   TIGR04129 25 lekleeekklskkCeyCeeeAv 46
                ++k+e ++++  +C++C ++Av
  MMETSP1137-20121227|9755_1 27 VKKIEISQHSRYTCSFCGKDAV 48
                6788899999*********996 PP

  == domain 2    score: -1.4 bits;  conditional E-value: 0.3
   TIGR04129 37 kCeyCee 43
                 C+ C++
  MMETSP1137-20121227|9755_1 57 ACSACKK 63
                5999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (93 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       148  (0.03608); expected 82.0 (0.02)
Passed bias filter:                      121  (0.0294978); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.13u 0.18s 00:00:00.31 Elapsed: 00:00:00.34
# Mc/sec: 361.03
//
Query:       MMETSP1137-20121227|9756_1  [L=500]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (500 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       133  (0.0324232); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.14s 00:00:00.51 Elapsed: 00:00:00.36
# Mc/sec: 1833.18
//
Query:       MMETSP1137-20121227|9757_1  [L=285]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.4e-45  152.2   0.3    1.3e-41  140.0   0.1    2.1  2  TIGR01958 nuoE_fam: NADH-quinone oxidoreductase, E subunit


Domain annotation for each model (and alignments):
>> TIGR01958  nuoE_fam: NADH-quinone oxidoreductase, E subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.3   0.0   3.1e-05      0.13       2      28 ..      73     101 ..      72     117 .. 0.84
   2 !  140.0   0.1   3.1e-45   1.3e-41      25     147 ..     123     245 ..     118     246 .. 0.97

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 3.1e-05
   TIGR01958   2 ieeaikkypd..dqkrsaileaLkeaqee 28 
                 i+ +++kypd  ++k+s i+++L ++q++
  MMETSP1137-20121227|9757_1  73 IAFTLSKYPDtlQGKQSGIMPLLWIVQQQ 101
                 667899****999**************98 PP

  == domain 2    score: 140.0 bits;  conditional E-value: 3.1e-45
   TIGR01958  25 aqeekGwvaaealeavAelleipaveveevatFYsmfetepvgryklqvCttvvCaLrGseallkalekklgiklgettkdgkftlkeveClgaCeeaPvllvnedtyerlteekleelleel 147
                  q   Gwv+ +a++++Ae l+ ++++v+evatF++m+++e++g++++q+C t++C+++G+ ++++++e +lgik get kdg  tl+eveClgaC++aP+++vn+ ++e+lt+e+  +ll++l
  MMETSP1137-20121227|9757_1 123 TQGGGGWVPLAAMHKIAERLGCSHMDVYEVATFFTMYNREKKGKFHIQLCATTPCMVCGAYDIMHTIEAHLGIKAGETSKDGMWTLTEVECLGACVNAPMIQVNDFFFENLTPENTVKLLDDL 245
                 567789******************************************************************************************************************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (285 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        88  (0.0214529); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.27u 0.14s 00:00:00.41 Elapsed: 00:00:00.38
# Mc/sec: 989.92
//
Query:       MMETSP1137-20121227|9758_1  [L=100]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (100 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        75  (0.0182838); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.17s 00:00:00.32 Elapsed: 00:00:00.27
# Mc/sec: 488.85
//
Query:       MMETSP1137-20121227|9759_1  [L=226]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      1e-08   32.5   0.0    1.6e-08   31.9   0.0    1.2  1  TIGR01622 SF-CC1: splicing factor, CC1-like family
    8.7e-08   28.9   0.0    1.2e-07   28.5   0.0    1.1  1  TIGR01642 U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor
    1.7e-07   28.6   0.0    2.6e-07   28.0   0.0    1.2  1  TIGR01628 PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family
    0.00011   19.8   0.0    0.00015   19.3   0.0    1.1  1  TIGR01661 ELAV_HUD_SF: ELAV/HuD family splicing factor


Domain annotation for each model (and alignments):
>> TIGR01622  SF-CC1: splicing factor, CC1-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.9   0.0   1.5e-11   1.6e-08     215     293 ..      36     113 ..      19     118 .. 0.89

  Alignments for each domain:
  == domain 1    score: 31.9 bits;  conditional E-value: 1.5e-11
   TIGR01622 215 nsiadlkLYvGnlhfnitEqeLrqiFepFGeielvqlqkDpetGrskGyGFiqFsdaeeakeAleklNGlelAGReikv 293
                 + + +  ++vGnl f+ t qeL++  +  G++ + ++++  ++ rskG G +++++ e a  A e+l   +  GR+i v
  MMETSP1137-20121227|9759_1  36 GDADPCTVFVGNLPFETTWQELKEHMKQAGDVAHADINQTADG-RSKGSGLVRYVKEEDAEWAVENLTETDCGGRNIFV 113
                 44667889*****************************998876.********************************977 PP

>> TIGR01642  U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.5   0.0   1.2e-10   1.2e-07     294     371 ..      38     114 ..      17     120 .. 0.88

  Alignments for each domain:
  == domain 1    score: 28.5 bits;  conditional E-value: 1.2e-10
   TIGR01642 294 dsedklyignLPldlkddqvkeLLesFGdLkaFnliKdlatGlsKGyaFceykdssvtdlAiaaLnGiklgdkkLnvk 371
                  ++  +++gnLP++ + + +ke +++ Gd+     i ++a+G sKG + + y+   +++ A++ L   ++g++ + v+
  MMETSP1137-20121227|9759_1  38 ADPCTVFVGNLPFETTWQELKEHMKQAGDVAH-ADINQTADGRSKGSGLVRYVKEEDAEWAVENLTETDCGGRNIFVR 114
                 455679***********************965.55899**********************************999887 PP

>> TIGR01628  PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.0   0.0   2.5e-10   2.6e-07      90     161 ..      42     113 ..      29     117 .. 0.79

  Alignments for each domain:
  == domain 1    score: 28.0 bits;  conditional E-value: 2.5e-10
   TIGR01628  90 NifvKnLdksidnkaLfdtFskfGnilsckvatdeeGkSkgYgfvhfedeesAkeAieklNgvllndkevyv 161
                  +fv nL+ + + + L++  ++ G +    + +  +G+Skg g v++ +ee A+ A+e+l  +  + ++++v
  MMETSP1137-20121227|9759_1  42 TVFVGNLPFETTWQELKEHMKQAGDVAHADINQTADGRSKGSGLVRYVKEEDAEWAVENLTETDCGGRNIFV 113
                 478888888888888888888888888888888888888888888888888888888888888888777777 PP

>> TIGR01661  ELAV_HUD_SF: ELAV/HuD family splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.0   1.5e-07   0.00015      92     152 ..      43     102 ..      27     115 .. 0.64

  Alignments for each domain:
  == domain 1    score: 19.3 bits;  conditional E-value: 1.5e-07
   TIGR01661  92 lyvsGlPktmtqkeleslfspfGkiitsrilsdnvtdlskGvGfirfdkreeadraikaln 152
                 ++v  lP + t +el + +++ G +  + i +    + skG G++r+ k e+a+ a+ +l 
  MMETSP1137-20121227|9759_1  43 VFVGNLPFETTWQELKEHMKQAGDVAHADINQ-TADGRSKGSGLVRYVKEEDAEWAVENLT 102
                 55666666666666666666666666555532.3445666666666666666666666554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (226 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       101  (0.0246221); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.23u 0.18s 00:00:00.41 Elapsed: 00:00:00.51
# Mc/sec: 584.89
//
Query:       MMETSP1137-20121227|9760_1  [L=299]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (299 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        67  (0.0163335); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.17s 00:00:00.40 Elapsed: 00:00:00.38
# Mc/sec: 1038.55
//
Query:       MMETSP1137-20121227|9761_1  [L=63]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (63 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        66  (0.0160897); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.25
# Mc/sec: 332.61
//
Query:       MMETSP1137-20121227|9763_1  [L=346]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      7e-06   23.2  15.2    0.00069   16.6   3.6    2.1  2  TIGR00820 zip: ZIP zinc/iron transport family


Domain annotation for each model (and alignments):
>> TIGR00820  zip: ZIP zinc/iron transport family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.2   2.6   7.4e-06      0.03     263     317 ..     106     159 ..      72     164 .. 0.62
   2 !   16.6   3.6   1.7e-07   0.00069     149     294 ..     174     315 ..     157     339 .. 0.73

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 7.4e-06
   TIGR00820 263 AliveGlLnalsaGiLiYmaLvdllA..adFlskklqsnlrlqllayialllGaglm 317
                  l+   +  a+saG++iY++Lv+++A   +++s+  + +l    l+ ++ + G   m
  MMETSP1137-20121227|9763_1 106 SLLAATM--AFSAGVMIYVSLVEVIAvaNEYFSQSYSPSLAY-ALSTLSFFAGVLAM 159
                 5544443..89*************972256777766555433.33444444444444 PP

  == domain 2    score: 16.6 bits;  conditional E-value: 1.7e-07
   TIGR00820 149 kesaedevkeeeeeeqllrqrvvaqvLelGiivHsvviGls..lGasqskdtikaLiaaLsFHqlFeGlglGgcisqaefkakkvvilavffavttPlgiaiGlavsssydeespkAliveGlLnalsaGiLiYmaLvdllAadFlsk 294
                 k++ ed+ +     +  + +  +a v+   i++H +  G++  + + +s  +  +L +a+  H + eGl++   i +a   ++++v+l ++ ++  P+g  +   v++   e s kA    G+  +l aG++ Y+ + +ll + F + 
  MMETSP1137-20121227|9763_1 174 KAHEEDDAAA-IAAVAAITELALAAVVSAAIVLHNIPEGMAtyVASFHSVSAGLPLAIAIAIHNIPEGLAVAMPIYHATGSRSRAVLLGTLSGLSEPFGALLASIVAN---EASSKAA-FGGM-FGLTAGMMTYVCISELLPTAFNES 315
                 2232222222.345556667778899999**********9822344567777789********************************************998877775...3444443.3555.5799*************9999765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (346 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       247  (0.0602145); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.29u 0.13s 00:00:00.42 Elapsed: 00:00:00.52
# Mc/sec: 878.24
//
Query:       MMETSP1137-20121227|9764_1  [L=909]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (909 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       117  (0.0285227); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.54u 0.12s 00:00:00.66 Elapsed: 00:00:00.66
# Mc/sec: 1817.85
//
Query:       MMETSP1137-20121227|9765_1  [L=154]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (154 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        88  (0.0214529); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.17s 00:00:00.35 Elapsed: 00:00:00.32
# Mc/sec: 635.20
//
Query:       MMETSP1137-20121227|9766_1  [L=72]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        62  (0.0151146); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.18s 00:00:00.32 Elapsed: 00:00:00.26
# Mc/sec: 365.51
//
Query:       MMETSP1137-20121227|9767_1  [L=292]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        2.2    3.6  18.6        2.5    3.4  12.9    1.3  1  TIGR02013 rpoB: DNA-directed RNA polymerase, beta subunit
          8    2.4  28.5        9.9    2.1  19.8    1.1  1  TIGR00934 2a38euk: potassium uptake protein, Trk family


Domain annotation for each model (and alignments):
>> TIGR02013  rpoB: DNA-directed RNA polymerase, beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4  12.9    0.0012       2.5     893     994 ..     100     201 ..       8     233 .. 0.60

  Alignments for each domain:
  == domain 1    score: 3.4 bits;  conditional E-value: 0.0012
   TIGR02013 893 kekdkralkveeeeldkakkekeeelkillkeelkrlkellvkeekeaekeaklekae.lakeaeekenelellkeylkelkklleekkeekkkleegdeLpp 994
                 kek+k++ k + +++dk+k++++++ k ++k+++k++++ ++k++++ ++++k ++++  ++++++k+++++  k+ +++ k+ ++++ ++ +k++   +L++
  MMETSP1137-20121227|9767_1 100 KEKHKHKDKHKDKHKDKHKDKHKDKHKDKHKDKHKDKHKDKHKDKHKDKHKDKHKDKHkDKHKDKHKDKHKDKHKD-KHKDKHGSTRNVHNLRKQTAAGDLKS 201
                 2222222222223333333333333333333333333333333322222222222222111222222222222222.22223333333333444444444554 PP

>> TIGR00934  2a38euk: potassium uptake protein, Trk family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1  19.8    0.0048       9.9     297     454 ..      51     244 ..       7     255 .. 0.29

  Alignments for each domain:
  == domain 1    score: 2.1 bits;  conditional E-value: 0.0048
   TIGR00934 297 s...........................rriqekikrrlstssiekns....................qqnltrlaktksfdd.skavrlersktidraeasdleeldrakdfqkmveknvkaakrkkknfkkreanlklfeksryakksdrneedngn.....kkdasksneseevsldseenayptyndeeedsrhalsktesknYLsw 454
                 +                             iq+                                   ++++++ ++++  +d  k ++  + k +++ +++d  + +++ ++++ +++++k+++++k++ k+++++++  ++ + ++++ +n     +       ++ +   s++v ++++  ++++  ++ e ++ ++ +   +  Lsw
  MMETSP1137-20121227|9767_1  51 GdeawlapalmvkigdrtaatatktgsdEGIQD--------------YvvnpkasahkhgckhkekhkHKDKHKDKHKDKHKDkHKDKHKDKHKDKHKDKHKDKHKDKHKDKHKDKHKDKHKDKHKDKHKDKHKDKHKDKHKDKHGSTRNVHNLR---KqtaagDLKSGSDSSSDDVAESASSGSHVATRQQSEVAKVETGERRDQAGLSW 244
                 022222222222222222222222222212222..............022222222222222111111222222222222222111111111111111122222222222222333333333333333333333333333322222222222222...22223333333333344444444444555555555544444444444445555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (292 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       388  (0.094588); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                        27  (0.00658216); expected 4.1 (0.001)
Passed Fwd filter:                        15  (0.00365675); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.57u 0.16s 00:00:00.73 Elapsed: 00:00:00.76
# Mc/sec: 507.12
//
Query:       MMETSP1137-20121227|9768_1  [L=83]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (83 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        37  (0.00901999); expected 82.0 (0.02)
Passed bias filter:                       37  (0.00901999); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.14s 00:00:00.27 Elapsed: 00:00:00.27
# Mc/sec: 405.74
//
Query:       MMETSP1137-20121227|9769_1  [L=383]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (383 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        95  (0.0231594); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.18s 00:00:00.48 Elapsed: 00:00:00.38
# Mc/sec: 1330.31
//
Query:       MMETSP1137-20121227|9770_1  [L=1391]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
          0 1667.7   0.0          0 1667.5   0.0    1.0  1  TIGR02025 BchH: magnesium chelatase, H subunit
   3.9e-187  622.3   0.0     5e-187  622.0   0.0    1.1  1  TIGR02257 cobalto_cobN: cobaltochelatase, CobN subunit


Domain annotation for each model (and alignments):
>> TIGR02025  BchH: magnesium chelatase, H subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ! 1667.5   0.0         0         0       2    1271 .]      87    1391 .]      86    1391 .] 0.97

  Alignments for each domain:
  == domain 1    score: 1667.5 bits;  conditional E-value: 0
   TIGR02025    2 rvvlvvleeqlnaalsraaaelnreld.laadleivaleelkekekleevekaikeadllfvsllfledqvrklkevlseer.qvkavvvvesapelmkltklGsfala.kseeksgilkllkkladlvkkeeedklaaqlkllktvpkllkfiPgekaqDlrnyllvyqyWlngskenlanlllllvdkYlaselg......vkveapveypdiglyHPdakklfetekeykewkkkre....gvkaekagrvgllllRkhllaenkahidnlirelEakglqvvpafakGldfrkaveeflmkdsteakkvDavvsltgFsLvGGPAesdeaaakeiLkkldvPylvaiPllfqtieeWkaselGlaplqvalsvaiPElDGaiepvilgglegeagkviaveerlealaervkrlvrLRkksnaekkvaivvfsfPPdkGnvgtAAyLdvfesllellkklkdeGYdveelPesveeLieavledeeeqlksadenvaarieveqkekltpelerieeqWgkapGellkdgdellilGaqlGnvfigvqPslGyegDPmrLlferdaaPhhafaafYrwldkefkAdAllHfGtHGslEfmPGkqvGlsgecwpdrLlgdlPnlYlYavnnPsEatiAkRRglatlvsylvPPlerAGLYkelreLkeliaeyrekkee.egaeileaiikkaeeleLdkdvpeik.........qeqaeefvkrlyiklleleerliplgLhvlGeapsaeelvdtlvelvsldre...ersLpelvletlgknleeie.......leeieslekvteaaavavkrlveealeelergsfaekle.........keelekvlaksklpeldkekldrlleeleailkllledeElegllkaLeGeyippaPGgDlvRdpevlPtGrniHalDPyriPseaAvkagkrvadkllekkraeesgeyPEsiAvvlWGtDniktkGesvaqvlallGaepvkdelGriakveLiPLeklGrPRiDvvvtlsgiFRDllsnqielLdeavklAAeAdEPeemnfvrkHalaqaeelgidveeAaaRvfsnapGsygsnvndlvedsaWeeeeeLadtfikRksfaygkeekg..ekkpeilqslLktvdlvfqnvDsvElgltdidhYyeslggvskaverakgkkatavyvedttkkakakvreleelvrleaRtklLnPkWyegmlehGyeGvreiskrltntlGWsataeavddWvYdqltetyilDeemrerlaelnpealrkivsrllEasgRglWeadeeklekLqelyeeledrlEGv 1271
                  +vv+vvle+q++a+l+ a + +n  ++ +a + + + leel+++ ++e+++k++ ea+++++sl+f+++ ++k++ +++ +r +++av+v+ s+p++m+++k+Gsf +a  +++k+ + +++kk++     ++++ ++++lkl++t+pk+lk++Pg+ka+D+r++++++qyWl+gs+en+++lll l+ +Y+   ++      + v +p ++pd g++HP a+k+fet +ey +w ++ +    g+  ++a++vg++l+++h+ ++++ah+++ i elE++g+ v+p++++ ldf++ ++e++  +++    vD v++ltgF+LvGGPA++d+++a+  L+kld+Pyl+a+P +fqt+eeWk+selGl+p+qval+va+PElDGaiep+i++g++g +g+ i+  +r+e la+r+ ++++LR+k+ ++kkvai+vfsfPPdkGnvgtAAyL+vf s++e lk++k+eGY+v+elPesve+L++ vl+++e+ l s ++nv+ +++v+++++ltp+ +++ee+Wg +pG+l++dg +ll++G+++GnvfigvqPs+GyegDPmrLl++++a+Phh+faa+Y++++k f AdA+lHfGtHGslEfmPGkqvG+sg c+pdrL+   PnlY+Ya+nnPsEatiAkRR++a ++syl+PP+e+AGLYk+l+eL el+++y+  +e+ +g +i++ i++ a++++Ldkdv+ +           eq++ +v+r+y k++e+e+rl+p+gLh +G +p+a e+v+tlv+++s dr+   ++sLp +++e++g+++e+i+       le+    +++++a+++av++ v++ ++++ r++ ++ l           +++++ la+   + + ++ + +l+++le++lk++++d+E+ +ll +L+G++i+p+PGgD++R+p vlPtG+n+HalDP++iP+ aA+  +k v+d+lle++ a+++g+yPEsiA vlWGtDnikt+Ges+aqvl+++G++p +d+lGr++++e iPLe+lGrPRiDvvvt+sg+FRDl++nq++lLd+avkl Ae dEP+emnfvrkHal+qaee+g+++++Aa+Rvfsna+Gsy++nv  ++e++ We e++L+d f+ Rk+fa++ ++ g  +++++i++s Lk vd +fqn+Ds+E++ltd++hY++s++++  a  r++g k+++++v+dtt +a+a+vr+l+e+vrl+aRtklLnPk+yegml+ GyeG rei krl nt+GWsata+avd++vY+++++t+i Deemr+rl + np+a+r++v+++lEa+gRg+We++ee+l++L++ly+e++d++EGv
  MMETSP1137-20121227|9770_1   87 KVVYVVLESQYQASLTTACKRINAGQPgVAVECSGYILEELRDEANYEQFKKDVAEANIFIGSLIFVQELADKVVAAVEPNRdNLDAVCVFPSMPAVMRMNKIGSFTMAsMGQSKNVMVDFMKKNKP----SGTSFQDGMLKLVRTLPKVLKYLPGDKAKDARSFMMSLQYWLGGSPENIEALLLNLASNYVPEVMEkgmlneMPVLEPEVIPDRGIWHPVASKVFETPAEYMQWLREEHapsvGIDVDTAPVVGIVLQKSHINTKDDAHYVSFIMELESRGALVLPTYTGALDFSVCIDEYFFLNGKT--LVDSVINLTGFALVGGPATQDHPKAVATLQKLDRPYLCAVPATFQTFEEWKDSELGLHPVQVALQVALPELDGAIEPIIYAGRDGVTGRSIPQADRIEVLARRALKWASLRRKEVKDKKVAITVFSFPPDKGNVGTAAYLNVFGSIFECLKAMKAEGYEVGELPESVEDLVDEVLHEKEARLASPQLNVEYKMSVSEYKELTPYASELEENWGPPPGQLNSDGANLLVYGKRFGNVFIGVQPSFGYEGDPMRLLYAKSASPHHGFAAYYTYVEKVFGADAVLHFGTHGSLEFMPGKQVGMSGGCYPDRLIQSTPNLYYYAANNPSEATIAKRRSYANTISYLTPPAENAGLYKGLKELGELVGSYQGLRESgRGSTIVNSIVATARQCNLDKDVDLPGeeddtaeltLEQRDRVVGRVYSKIMEIESRLLPCGLHTVGVPPTAMEAVATLVNIASIDRPeesIKSLPRSIAEAIGRDIEQIYrnsdngvLEDATLRQNIVTATRAAVQACVDRSTDANGRVTEVKSLFdnmadmfmgGSPMKRALADN-GFTVSDDAIAPLFKYLEFCLKQVVADNEMGALLDGLNGKFITPGPGGDPIRNPLVLPTGKNMHALDPQAIPTIAACDCAKIVVDRLLERQAADNDGAYPESIAFVLWGTDNIKTYGESLAQVLWMVGVRPLPDSLGRVNQIEAIPLEELGRPRIDVVVTCSGVFRDLFINQMNLLDRAVKLVAELDEPLEMNFVRKHALEQAEEMGVSLRDAATRVFSNAAGSYSANVGLAIENGGWEGEDQLQDQFLARKGFAFNADKPGvlDAAEDIFKSSLKRVDVTFQNLDSSEISLTDVSHYFDSDPTKVVAGLRTDG-KKPTSFVADTT-TANAQVRTLSETVRLDARTKLLNPKFYEGMLKSGYEGTREITKRLRNTMGWSATAGAVDNFVYEDANDTFIADEEMRQRLLDTNPNAFRDMVTTFLEANGRGYWETSEENLDRLRQLYAEVDDKIEGV 1391
                  89**********************76626789*************************************************99**************************889999999****99877....999**********************************************************9876666655444445667899*********************988777999999**********************************************************9998..9*********************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************88***********************998888888888899************************************************999999************************99999999*********************9999955544435778887767778888877.68899999************************************************************************************************************************************************************************************************************************************************************99899************************************************.99*********.9999***************************************************************************************************************************8 PP

>> TIGR02257  cobalto_cobN: cobaltochelatase, CobN subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  622.0   0.0  2.5e-190    5e-187     162    1225 ..     282    1385 ..     220    1386 .. 0.86

  Alignments for each domain:
  == domain 1    score: 622.0 bits;  conditional E-value: 2.5e-190
   TIGR02257  162 ltkdeavveakaikkagladPlrgeikkek.....................lakvGilfYralllagdtaliealidaLrqrglrplpvfvssLkdkevlaevldllkeekvevvltttaFas....skeeadegetlldsldvPvlqvlvsn.ksreeWedssrGleprDLalqvvlPelDgRiltravsFkevsevdekleskvvaykpdedrikfvadlaanwiklqrkekaerkialvlanYPvrdGRigngvGLdtPasvvellkalkeeGYdlgekplPkngdaLiklllkgrtnslesedrepleklsldeylkffeklpkkakeeivarwgepsqdpdledkkgfaiaglrfGnivvliqPdRGydadkkadyhsPdLaPphrylafylwlrkvfgadalvhvGkhGtleWLPGksvaLseeCfPeivlgplPhiYPFivndPGegaqakRRtqavildhLtPPLtraelygklkkLeelvdeyyeaklldsrRlevlekqilelvkdedldeeisvke..sdkldsilekld.......ayLCdLkesqirdGLhifGrapegrkltdlllalarv..PtskkkGltralardlgle.............ld.Plaadegeslseadkailadlskaklrtlgdtlealeeqaaslvekllrkeqakdeaaaire.....vlekikeellpsilk.steaekasllkaleGryvaaGpsGaPsRGrsdvLPtGrnfysvDlRalPteaawdlgkksaeelierylqe.hGealrklalsvWgtatmRtGGediaqaLallGvrPvWdaasrrvvdleviPlslLgRPRvDvtlRisGlFRDaFpnlialvdkavqavaeldedeelnplaarvraee........kassRifGskPgaYGaglqelieekaWeekedlaeaylkwssyaYgageegi..aarealeerlkkiqvvlhnqDnrehDlLdsddyyqFqGGlsaaveklsGkrpeiyfgDhsrkekpkirkleeeldrvvRaRvvnpkwieGmkrhGykGafelaatvDylfaydatteavsdwlyeaiadaylldeevkeFlieknPaalrdlaeRlleaanRelWqeakeeileelkklileae 1225
                  + ++ +v e++ i+  g+++P++ ++ ++                       + vGi++ ++++++ d a   ++i +L++rg   lp +  +L  + ++ e   l  ++ v+ v++ t+Fa     ++++ ++  + l++ld+P l  + ++ ++ eeW+ds+ Gl+p  +alqv+lPelDg i   + + ++ ++          +  p+ dri+ +a +a +w++l+rke +++k+a+ +  +P  +G +g +  L++  s+ e lka+k+eGY++ge  lP++ ++L++ +l+ ++  l+s + ++ +k+s+ ey+++   +     +e++++wg p  + + + + ++ + g rfGn+++++qP+ Gy+ d+ + +++    P h++ a+y +++kvfgada++h G hG+le++PGk v++s  C+P+ ++ + P++Y +  n+P e++ akRR+ a ++ +LtPP + a+ly++lk+L elv  y    l +s R +++ ++i++++++ +ld+++ +    +d+ + +le+ d       + + ++    +  GLh  G  p  ++ + +l+ +a    P+++ k l r++a+  g +              d  l ++   +   a +a++ d+s++   ++ +  +  +++a +++    +k +  d+  ++++     ++    + l   +++  + +e+ +ll +l+G+++++Gp G P R ++ vLPtG+n+++ D  a+Pt aa d +k   ++l+er   + +G  ++++a+ +Wgt +++t Ge +aq+L ++GvrP  d+   rv ++e iPl+ LgRPR+Dv++  sG+FRD F n+++l+d+av++vaelde+ e n + ++  ++          a +R+f  + g+Y a +  +ie++ We +++l + +l    +a++a + g+  aa++ ++ +lk+++v  +n D  e  l d + y+       +a  +  Gk+p+ ++ D++   ++++r+l+e +    R++++npk+ eGm + Gy G  e+++ +   +++ at++av++++ye + d++++dee+++ l++ nP a+rd+   +lea+ R+ W+ ++ e l++l++l +e++
  MMETSP1137-20121227|9770_1  282 MLNEMPVLEPEVIPDRGIWHPVASKVFETPaeymqwlreehapsvgidvdtAPVVGIVLQKSHINTKDDAHYVSFIMELESRGALVLPTYTGALDFSVCIDEYFFLNGKTLVDSVINLTGFALvggpATQDHPKAVATLQKLDRPYLCAVPATfQTFEEWKDSELGLHPVQVALQVALPELDGAIEPIIYAGRDGVT---------GRSIPQADRIEVLARRALKWASLRRKEVKDKKVAITVFSFPPDKGNVGTAAYLNVFGSIFECLKAMKAEGYEVGE--LPESVEDLVDEVLHEKEARLASPQLNVEYKMSVSEYKELTPYA-----SELEENWGPPPGQLNSD-GANLLVYGKRFGNVFIGVQPSFGYEGDPMRLLYAKSASPHHGFAAYYTYVEKVFGADAVLHFGTHGSLEFMPGKQVGMSGGCYPDRLIQSTPNLYYYAANNPSEATIAKRRSYANTISYLTPPAENAGLYKGLKELGELVGSYQG--LRESGRGSTIVNSIVATARQCNLDKDVDLPGeeDDTAELTLEQRDrvvgrvySKIMEIESRLLPCGLHTVGVPPTAMEAVATLVNIASIdrPEESIKSLPRSIAEAIGRDieqiyrnsdngvlEDaTLRQNIVTATRAAVQACV-DRSTDANGRVTEVKSLFDNMADMFMGGSPMKRALADNGFTVSDdaiapLF----KYLEFCLKQvVADNEMGALLDGLNGKFITPGPGGDPIR-NPLVLPTGKNMHALDPQAIPTIAACDCAKIVVDRLLERQAADnDGAYPESIAFVLWGTDNIKTYGESLAQVLWMVGVRPLPDSL-GRVNQIEAIPLEELGRPRIDVVVTCSGVFRDLFINQMNLLDRAVKLVAELDEPLEMNFVRKHALEQAeemgvslrDAATRVFSNAAGSYSANVGLAIENGGWEGEDQLQDQFLARKGFAFNADKPGVldAAEDIFKSSLKRVDVTFQNLDSSEISLTDVSHYFDSDPTKVVAGLRTDGKKPTSFVADTTTA-NAQVRTLSETVRLDARTKLLNPKFYEGMLKSGYEGTREITKRLRNTMGWSATAGAVDNFVYEDANDTFIADEEMRQRLLDTNPNAFRDMVTTFLEANGRGYWETSE-ENLDRLRQLYAEVD 1385
                  33455667888888888888888877776667788888888777777766677788******************************************************************9998878888899999*********99988736679*************************99765555544332.........2346999********************************************************************..************************************9986554.....568899***99986655.77********************************************************************************************************************************************986..55788999*****************9998653233444455555511111116677777777889*****************9999975338888899**********994444444444442121222233333223333333.33333333355666666666666665554444444433333325444444....44444444415789************************.688**********************************9876527************************************9975.79********************************************************998766555679****9999********************************************999982245688*********************************99999999************9875.689***************************************************************************************************9955.559******99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1391 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        91  (0.0221843); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.02u 0.23s 00:00:01.25 Elapsed: 00:00:01.28
# Mc/sec: 1434.35
//
Query:       MMETSP1137-20121227|9771_1  [L=123]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (123 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        75  (0.0182838); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.14s 00:00:00.29 Elapsed: 00:00:00.28
# Mc/sec: 579.81
//
Query:       MMETSP1137-20121227|9772_1  [L=147]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.065   11.0   2.4      0.091   10.5   0.7    1.5  2  TIGR02551 SpaO_YscQ: type III secretion apparatus protein, YscQ/HrcQ family


Domain annotation for each model (and alignments):
>> TIGR02551  SpaO_YscQ: type III secretion apparatus protein, YscQ/HrcQ family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   1.1   8.3e-05      0.34      47     132 ..       8      91 ..       4      98 .. 0.68
   2 ?   10.5   0.7   2.2e-05     0.091     173     251 ..      48     126 ..      33     128 .. 0.78

  Alignments for each domain:
  == domain 1    score: 8.6 bits;  conditional E-value: 8.3e-05
   TIGR02551  47 lpaelllllllaalaaagllltelvalgespaslsaptlaldalalsltlegdegpvvvallaalalwlswvaaallaalparats 132
                 l+ ++ +++ +a+++aa+++l   +al  ++a+++ p + +++++ s+ +    g + ++l+++ +  ++  aaa+ aa+   +++
  MMETSP1137-20121227|9772_1   8 LSYDIISESNAACTDAAVAGLAPALALLVPAARPVSP-MQAQQSTMSYGARAACGXELRRLRMMDEEPET-AAAATPAAPAPNMNA 91 
                 5567889999*****************9999999764.44444555555555555566677777776666.555555566555555 PP

  == domain 2    score: 10.5 bits;  conditional E-value: 2.2e-05
   TIGR02551 173 ra...etaallavgtplqelelaedeltleeqieaddddlsdladtesedeaaapteegladlnqlpvtlefElgrltltla 251
                 ++   + +a++a+g  l++l+++++e ++  + + +  ++  ++ t s d +a++ ++ + ++++lp +  f+l  +++tl+
  MMETSP1137-20121227|9772_1  48 QQstmSYGARAACGXELRRLRMMDEEPETAAAATPA-APAPNMNATSS-DISASAVDF-TPSTAPLPTEEGFDLSNYSMTLS 126
                 3356678999*****************999977766.57777775555.556665655.59*******************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (147 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        73  (0.0177962); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.16u 0.13s 00:00:00.29 Elapsed: 00:00:00.28
# Mc/sec: 669.05
//
Query:       MMETSP1137-20121227|9773_1  [L=102]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (102 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       292  (0.0711848); expected 82.0 (0.02)
Passed bias filter:                      132  (0.0321794); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.19s 00:00:00.35 Elapsed: 00:00:00.45
# Mc/sec: 299.18
//
Query:       MMETSP1137-20121227|9776_1  [L=62]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (62 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        48  (0.0117016); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:00.57
# Mc/sec: 141.09
//
Query:       MMETSP1137-20121227|9777_1  [L=188]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (188 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       171  (0.041687); expected 82.0 (0.02)
Passed bias filter:                      115  (0.0280351); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.23s 00:00:00.39 Elapsed: 00:00:00.83
# Mc/sec: 298.96
//
Query:       MMETSP1137-20121227|9778_1  [L=285]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (285 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        72  (0.0175524); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.18s 00:00:00.39 Elapsed: 00:00:00.36
# Mc/sec: 1044.91
//
Query:       MMETSP1137-20121227|9779_1  [L=227]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (227 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        72  (0.0175524); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.16s 00:00:00.35 Elapsed: 00:00:00.37
# Mc/sec: 809.77
//
Query:       MMETSP1137-20121227|9780_1  [L=540]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.044   11.5   0.1      0.082   10.7   0.1    1.3  1  TIGR03563 perox_SACOL1771: peroxiredoxin, SACOL1771 subfamily


Domain annotation for each model (and alignments):
>> TIGR03563  perox_SACOL1771: peroxiredoxin, SACOL1771 subfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.1     2e-05     0.082      57      87 ..     501     531 ..     491     534 .. 0.87

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 2e-05
   TIGR03563  57 itlaamleraelekeklklesegivdvtngv 87 
                  +laa+l ra+l+  +l+ +s++++dv +g 
  MMETSP1137-20121227|9780_1 501 QALAATLARAQLTLASLSAQSTAVADVRDGA 531
                 579************************9885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (540 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       107  (0.0260848); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.18s 00:00:00.55 Elapsed: 00:00:00.36
# Mc/sec: 1979.84
//
Query:       MMETSP1137-20121227|9781_1  [L=212]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0018   16.5   0.9      0.011   13.9   0.1    2.2  2  TIGR02096 TIGR02096: conserved hypothetical protein
  ------ inclusion threshold ------
      0.015   13.4   0.9        1.2    7.3   0.1    3.1  2  TIGR01801 CM_A: chorismate mutase


Domain annotation for each model (and alignments):
>> TIGR02096  TIGR02096: conserved hypothetical protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.0     0.056   1.1e+02      41      75 ..      11      44 ..       4      57 .. 0.83
   2 !   13.9   0.1   5.2e-06     0.011      20      88 ..      58     126 ..      45     129 .. 0.91

  Alignments for each domain:
  == domain 1    score: 0.9 bits;  conditional E-value: 0.056
   TIGR02096 41 kdqlarflaelanalpdnevdvvrftaeegsavva 75
                k+ql ++ a+++ + +    ++ +++ ee  +v +
  MMETSP1137-20121227|9781_1 11 KEQLKKWKADMRAESRKIDRQILKIQREEQ-KVKL 44
                89**************99999999999998.6654 PP

  == domain 2    score: 13.9 bits;  conditional E-value: 5.2e-06
   TIGR02096  20 lallaeDvlyddeagsrklktkdqlarflaelanalpdnevdvvrftaeegsavvaewtvtGtyleafe 88 
                  ++la++++   +a sr  ++k+++ +++++++n++  ++v  +    +e+ +++   +  G++ e+++
  MMETSP1137-20121227|9781_1  58 CKMLAKEIVRSRKAVSRLHTSKAHMNSVVMQMQNQYSQQKVMGHMSKSTEVMRAMNSLVKVGEISETMQ 126
                 4789*******************************************************9***999986 PP

>> TIGR01801  CM_A: chorismate mutase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   0.1    0.0006       1.2      45      93 ..      32      80 ..      18      89 .. 0.78
   2 ?    3.1   0.0     0.012        24      68      91 ..     122     145 ..     101     152 .. 0.81

  Alignments for each domain:
  == domain 1    score: 7.3 bits;  conditional E-value: 0.0006
   TIGR01801 45 rydParekemlneliesnkGPfedatikqifkeifkaslelqesedkka 93
                +   +re+++++  i++     ++ t k + kei ++  ++ + + +ka
  MMETSP1137-20121227|9781_1 32 ILKIQREEQKVKLSIKQAAKRGDTGTCKMLAKEIVRSRKAVSRLHTSKA 80
                4556899999999999999999999999999999998888777776665 PP

  == domain 2    score: 3.1 bits;  conditional E-value: 0.012
   TIGR01801  68 datikqifkeifkaslelqesedk 91 
                 ++t++q+ ke++ka++  +  +d+
  MMETSP1137-20121227|9781_1 122 SETMQQMQKEMLKAGVIEEMVDDS 145
                 4799**********9876666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (212 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       817  (0.199171); expected 82.0 (0.02)
Passed bias filter:                      167  (0.0407118); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.27u 0.14s 00:00:00.41 Elapsed: 00:00:00.44
# Mc/sec: 635.95
//
Query:       MMETSP1137-20121227|9782_1  [L=298]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   5.5e-114  380.1   0.0   6.2e-114  379.9   0.0    1.0  1  TIGR03346 chaperone_ClpB: ATP-dependent chaperone protein ClpB
    1.1e-98  329.2   0.0    1.2e-98  329.0   0.0    1.0  1  TIGR02639 ClpA: ATP-dependent Clp protease ATP-binding subunit ClpA
    1.4e-80  269.5   0.0    1.6e-80  269.3   0.0    1.0  1  TIGR03345 VI_ClpV1: type VI secretion ATPase, ClpV1 family
    2.5e-06   24.5   0.0    4.7e-06   23.6   0.0    1.5  2  TIGR00390 hslU: ATP-dependent protease HslVU, ATPase subunit
    6.8e-06   23.1   0.0      0.038   10.8   0.0    2.2  2  TIGR00382 clpX: ATP-dependent Clp protease, ATP-binding subunit ClpX
    4.3e-05   20.0   0.0    5.8e-05   19.5   0.0    1.2  1  TIGR00763 lon: ATP-dependent protease La
    7.4e-05   20.2   0.0       0.11    9.9   0.0    2.3  2  TIGR02640 gas_vesic_GvpN: gas vesicle protein GvpN
    0.00013   19.9   0.0      0.034   11.9   0.0    2.2  2  TIGR03499 FlhF: flagellar biosynthesis protein FlhF
    0.00033   17.8   0.0    0.00053   17.2   0.0    1.3  1  TIGR02397 dnaX_nterm: DNA polymerase III, subunit gamma and tau
    0.00081   15.9   0.4     0.0017   14.8   0.0    1.6  2  TIGR03922 T7SS_EccA: type VII secretion AAA-ATPase EccA
     0.0021   15.1   0.0     0.0031   14.5   0.0    1.4  1  TIGR01242 26Sp45: 26S proteasome subunit P45 family
  ------ inclusion threshold ------
      0.013   12.3   0.0       0.07   10.0   0.0    1.9  2  TIGR00635 ruvB: Holliday junction DNA helicase RuvB
      0.015   12.7   0.0      0.054   10.9   0.0    1.9  2  TIGR00678 holB: DNA polymerase III, delta' subunit
      0.024   11.0   0.0       0.25    7.7   0.0    2.0  2  TIGR00368 TIGR00368: Mg chelatase-like protein


Domain annotation for each model (and alignments):
>> TIGR03346  chaperone_ClpB: ATP-dependent chaperone protein ClpB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  379.9   0.0  2.1e-116  6.2e-114     566     852 ..       2     282 ..       1     283 [. 0.97

  Alignments for each domain:
  == domain 1    score: 379.9 bits;  conditional E-value: 2.1e-116
   TIGR03346 566 rvvGqdeaveavadavrrsraglsdPnrPigsflflGptGvGktelakalaeflfddeealvridmseymekhsvarliGaPPGyvGyeeGGqlteavrrkpysvvlldevekahpdvfnvllqvlddGrltdgqGrtvdfkntviiltsnlgseaiqelaeeeeaeevkeavmealraefrPeflnrideivvfkalekeeikeiveiqlerlrkrlaerklelelsdaaldllaeagydPvyGarPlkraiqkelenplakkllagevkegdtiavdv.eddklvf 852
                 rv+Gqd+av+ava+++ rsragl+  ++P+gsflflGptGvGktelakal + lf+ +  +vr+dmsey e hsvarl+GaPPGy+G+e+GGqlteavr++py+vvllde+ekahp v+ vllqvld+Grltd++Gr+vdf+nt iiltsn+g++ ++  +      +++e+ me++r++f Peflnr+  i  f +l++e+++++v+  +  + +rlae+ ++ el+daa + + +a+++  yGarP+ r+++++++++l+++ll+ge+++g+t++vd+  d++l+f
  MMETSP1137-20121227|9782_1   2 RVIGQDDAVDAVANCIMRSRAGLARADQPTGSFLFLGPTGVGKTELAKALNADLFNGD--FVRLDMSEYSEAHSVARLVGAPPGYIGHEDGGQLTEAVRKRPYTVVLLDEIEKAHPRVLPVLLQVLDEGRLTDSKGRVVDFTNTAIILTSNIGATELLAGTP-----DAREKAMEMVRRHFPPEFLNRLSAICTFAPLDREKLRRLVHKAMGAVVQRLAEKGITAELTDAAAESVLNASFEARYGARPVERYLENTVTTELSRQLLTGEIAQGSTVVVDAgADGELRF 282
                 9******************************************************875..9**********************************************************************************************9998554.....4799************************************************************************************************************956677776 PP

>> TIGR02639  ClpA: ATP-dependent Clp protease ATP-binding subunit ClpA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  329.0   0.0  4.2e-101   1.2e-98     458     733 ..       2     273 ..       1     274 [. 0.96

  Alignments for each domain:
  == domain 1    score: 329.0 bits;  conditional E-value: 4.2e-101
   TIGR02639 458 kifGqdeaiealvkaikrsraGlkeenkPvgsflfvGptGvGktelakqL.aeelgvellrfDmseymekhtvsrliGsPpGyvGfeeGGlLteavrknPyavlLlDeiekahpDilnilLqvmDyatLtDnsGrkadfrnvilimtsnaGakeaskakiGfaeekseeksekaikklfsPefrnrldaiikfedlseevlekivkkeleelekkLaekkveleleddaikylaekgydeefGarelkrvieeeikkkladeiLfGklkkGgevkve 733
                 ++ Gqd+a++a+++ i rsraGl + ++P+gsflf GptGvGktelak+L a+ ++ +++r+Dmsey e h+v+rl+G+PpGy+G+e+GG+Lteavrk+Py+v+LlDeiekahp +l +lLqv+D+++LtD++Gr +df n+ +i+tsn+Ga e  +   G  +   +ek ++ ++++f Pef nrl+ai +f +l++e l ++v+k +  + ++Laek ++ el+d a + +++ +++ ++Gar+++r +e++++++l++++L G++ +G++v v+
  MMETSP1137-20121227|9782_1   2 RVIGQDDAVDAVANCIMRSRAGLARADQPTGSFLFLGPTGVGKTELAKALnADLFNGDFVRLDMSEYSEAHSVARLVGAPPGYIGHEDGGQLTEAVRKRPYTVVLLDEIEKAHPRVLPVLLQVLDEGRLTDSKGRVVDFTNTAIILTSNIGATELLA---GTPDA--REKAMEMVRRHFPPEFLNRLSAICTFAPLDREKLRRLVHKAMGAVVQRLAEKGITAELTDAAAESVLNASFEARYGARPVERYLENTVTTELSRQLLTGEIAQGSTVVVD 273
                 789***********************************************4455689***********************************************************************************************99985...54444..447999****************************************************************************************************9986 PP

>> TIGR03345  VI_ClpV1: type VI secretion ATPase, ClpV1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  269.3   0.0   5.5e-83   1.6e-80     567     840 ..       2     264 ..       1     274 [. 0.93

  Alignments for each domain:
  == domain 1    score: 269.3 bits;  conditional E-value: 5.5e-83
   TIGR03345 567 rvvGqdealeaiaerirtarAgledpkkPlgvFllvGpsGvGktetalalAellyGgeqnlitinmsefqeaHtvstLkGsPPGYvGyGeGGvLteAvRrkPysvvLLDevekAhpdvlelFyqvFDkGvleDgeGreidfkntvilltsnvgsdliaelaadeetapeaealaealrpeLlkvfkpAllgRlevv.pylplsdevlaeivelkleriakrlkenykaeleydealveeivarctevesGaRaidaileqtllpelseelLekla 840
                 rv+Gqd+a++a+a+ i+ +rAgl ++++P+g Fl++Gp GvGkte a al   l+ g+  ++ ++mse+ eaH+v++L+G+PPGY+G+ +GG LteAvR++Py+vvLLDe+ekAhp vl +  qv D G l+D++Gr +df nt i+ltsn+g+ ++ + + d ++         + ++ ++++f+p +l Rl+ + ++ pl++e l+++v+  ++ + +rl+e+ +++ e+++a++e++++ + e   GaR ++++le+t++ els++lL+  +
  MMETSP1137-20121227|9782_1   2 RVIGQDDAVDAVANCIMRSRAGLARADQPTGSFLFLGPTGVGKTELAKALNADLFNGD--FVRLDMSEYSEAHSVARLVGAPPGYIGHEDGGQLTEAVRKRPYTVVLLDEIEKAHPRVLPVLLQVLDEGRLTDSKGRVVDFTNTAIILTSNIGATELLAGTPDARE---------KAMEMVRRHFPPEFLNRLSAIcTFAPLDREKLRRLVHKAMGAVVQRLAEK-GITAELTDAAAESVLNASFEARYGARPVERYLENTVTTELSRQLLTGEI 264
                 9******************************************************996..899******************************************************************************************9998877643333.........33455789*********9865389************************99.9*******************************************98543 PP

>> TIGR00390  hslU: ATP-dependent protease HslVU, ATPase subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.6   0.0   1.6e-08   4.7e-06      14      93 ..       3      78 ..       1     127 [. 0.83
   2 ?   -2.7   0.0       1.5   4.4e+02     337     379 ..     196     234 ..     165     255 .. 0.61

  Alignments for each domain:
  == domain 1    score: 23.6 bits;  conditional E-value: 1.6e-08
   TIGR00390 14 iiGqdeakkavaialrnryrrlqleeelkdevvPknilmiGstGvGkteiarrl.aklaeaPfikveatkftevGyvGrdv 93
                +iGqd+a  ava  +     r++     + +      l +G+tGvGkte+a+ l a l +  f++++ + ++e   v r v
  MMETSP1137-20121227|9782_1  3 VIGQDDAVDAVANCI----MRSRAGLA-RADQPTGSFLFLGPTGVGKTELAKALnADLFNGDFVRLDMSEYSEAHSVARLV 78
                788888888877443....34443322.22333457899*************99679****************98888765 PP

  == domain 2    score: -2.7 bits;  conditional E-value: 1.5
   TIGR00390 337 dleriltetkaslikqykallkvegvelefsdeaikkiaelay 379
                 +l+r++ ++  +++++    l+ +g+  e++d a + + ++++
  MMETSP1137-20121227|9782_1 196 KLRRLVHKAMGAVVQR----LAEKGITAELTDAAAESVLNASF 234
                 4444444444333332....34455555555555555555555 PP

>> TIGR00382  clpX: ATP-dependent Clp protease, ATP-binding subunit ClpX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.6   0.0   0.00015     0.045     116     156 ..      30      71 ..       1     113 [. 0.70
   2 !   10.8   0.0   0.00013     0.038     296     382 ..     169     251 ..     159     273 .. 0.88

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 0.00015
   TIGR00382 116 eksnilliGptGsGktllaqtlakel.dvpfaiadattltea 156
                      l++GptG Gkt la++l + l +  f   d +  +ea
  MMETSP1137-20121227|9782_1  30 PTGSFLFLGPTGVGKTELAKALNADLfNGDFVRLDMSEYSEA 71 
                 44568999*************966542666666666666665 PP

  == domain 2    score: 10.8 bits;  conditional E-value: 0.00013
   TIGR00382 296 dlvkfGlipefiGrlpvlatlekldeealvailtkpknalvkqyqkllkldevelefeeealkaiakkalerktGarglrsiveell 382
                 ++v+  + pef+ rl  ++t+  ld+e l ++++k   a+v++       + +  e+++ a +++ + ++e + Gar +   +e+ +
  MMETSP1137-20121227|9782_1 169 EMVRRHFPPEFLNRLSAICTFAPLDREKLRRLVHKAMGAVVQRLA----EKGITAELTDAAAESVLNASFEARYGARPVERYLENTV 251
                 56677778********************************97654....478999999*******************9988888765 PP

>> TIGR00763  lon: ATP-dependent protease La
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.0     2e-07   5.8e-05     356     449 ..      34     126 ..      14     150 .. 0.75

  Alignments for each domain:
  == domain 1    score: 19.5 bits;  conditional E-value: 2e-07
   TIGR00763 356 lclvGPPGVGKtSlaksi.AkalnrkfvrlslGGl...kDvaeikGHRrtYvGalPG.kiiqglkkvktenPlillDEiDKlgssvrGdPasaLLEvLD 449
                 + + GP GVGKt lak++ A   n  fvrl +      + va + G    Y+G   G ++ ++++k      ++llDEi+K +  v      +LL vLD
  MMETSP1137-20121227|9782_1  34 FLFLGPTGVGKTELAKALnADLFNGDFVRLDMSEYseaHSVARLVGAPPGYIGHEDGgQLTEAVRKR--PYTVVLLDEIEKAHPRV----LPVLLQVLD 126
                 4699*************967788*******9875411156788888888888877541555555543..3459********86433....235555555 PP

>> TIGR02640  gas_vesic_GvpN: gas vesicle protein GvpN
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.1   0.0    0.0013      0.37      24      43 ..      34      53 ..       9      59 .. 0.79
   2 !    9.9   0.0   0.00036      0.11      97     135 ..      91     131 ..      86     162 .. 0.82

  Alignments for each domain:
  == domain 1    score: 8.1 bits;  conditional E-value: 0.0013
   TIGR02640 24 vhlrGPaGtGktslalhvak 43
                  + GP+G Gkt la ++ +
  MMETSP1137-20121227|9782_1 34 FLFLGPTGVGKTELAKALNA 53
                5689***********99865 PP

  == domain 2    score: 9.9 bits;  conditional E-value: 0.00036
   TIGR02640  97 nrltlavre.Gftlv.ydefsrskPeannvllsvleekvle 135
                 ++lt+avr+  +t+v  de ++++P +  vll vl+e+ l+
  MMETSP1137-20121227|9782_1  91 GQLTEAVRKrPYTVVlLDEIEKAHPRVLPVLLQVLDEGRLT 131
                 589****8636888736********************9875 PP

>> TIGR03499  FlhF: flagellar biosynthesis protein FlhF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.9   0.0   0.00012     0.034     196     212 ..      29      45 ..       7      50 .. 0.83
   2 !    6.0   0.0    0.0078       2.3     138     191 ..     203     261 ..     162     278 .. 0.74

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 0.00012
   TIGR03499 196 ekggviaLvGptGvGKT 212
                 +  g ++++GptGvGKT
  MMETSP1137-20121227|9782_1  29 QPTGSFLFLGPTGVGKT 45 
                 5567899*********9 PP

  == domain 2    score: 6.0 bits;  conditional E-value: 0.0078
   TIGR03499 138 perakllkklleagvseelarelleklke.....kedaeeareklreaLekklsvkkee 191
                 + +  ++++l e+g+ +el+++ +e++ +     +  a+ + ++l++ ++ +ls +  +
  MMETSP1137-20121227|9782_1 203 KAMGAVVQRLAEKGITAELTDAAAESVLNasfeaRYGARPVERYLENTVTTELSRQLLT 261
                 5667899*********************9844444444444555555555555444444 PP

>> TIGR02397  dnaX_nterm: DNA polymerase III, subunit gamma and tau
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.0   1.8e-06   0.00053      16      57 ..       3      52 ..       1      59 [. 0.80

  Alignments for each domain:
  == domain 1    score: 17.2 bits;  conditional E-value: 1.8e-06
   TIGR02397 16 liGqehvvktLknaikknkiaha........yLfsGprGvGKTsiArilA 57
                +iGq+  v+++ n i +++   a        +Lf Gp GvGKT +A+ l 
  MMETSP1137-20121227|9782_1  3 VIGQDDAVDAVANCIMRSRAGLAradqptgsFLFLGPTGVGKTELAKALN 52
                899*******999999998754333444444**************99885 PP

>> TIGR03922  T7SS_EccA: type VII secretion AAA-ATPase EccA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   5.9e-06    0.0017     294     333 ..      12      52 ..       7     108 .. 0.88
   2 ?   -1.7   0.2       0.6   1.7e+02     124     200 ..     208     290 ..     202     294 .. 0.61

  Alignments for each domain:
  == domain 1    score: 14.8 bits;  conditional E-value: 5.9e-06
   TIGR03922 294 svevalvRaerGlava.qrskHlllaGPPGtGkttiArvva 333
                 +v+  ++R + Gla a q +   l++GP G Gkt +A+++ 
  MMETSP1137-20121227|9782_1  12 AVANCIMRSRAGLARAdQPTGSFLFLGPTGVGKTELAKALN 52 
                 667779*******9762568899***************996 PP

  == domain 2    score: -1.7 bits;  conditional E-value: 0.6
   TIGR03922 124 vleqltpavrlsdldkaaaaaakaalgvalArLGl........feealryleealeapagpaavavvdlayakalvlRalgeede 200
                 v+++l ++ ++ +l +aaa +++ a     Ar G          + ++   ++ l++++++++  vvd      l  R++ ++d 
  MMETSP1137-20121227|9782_1 208 VVQRLAEKGITAELTDAAAESVLNAS--FEARYGArpveryleNTVTTELSRQLLTGEIAQGSTVVVDAGADGELRFRKRKKNDA 290
                 77888888777778888888887777..778888755555544223333334445556666666666655555555565555555 PP

>> TIGR01242  26Sp45: 26S proteasome subunit P45 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.0   1.1e-05    0.0031     155     194 ..      29      70 ..      22     129 .. 0.83

  Alignments for each domain:
  == domain 1    score: 14.5 bits;  conditional E-value: 1.1e-05
   TIGR01242 155 ppkG.vllyGppGtGktllakavaee.tnatfirvvgselvk 194
                  p G  l+ Gp G+Gkt laka+  +  n  f+r+  se+ +
  MMETSP1137-20121227|9782_1  29 QPTGsFLFLGPTGVGKTELAKALNADlFNGDFVRLDMSEYSE 70 
                 566615667*************966626999****9999865 PP

>> TIGR00635  ruvB: Holliday junction DNA helicase RuvB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.0   0.00024      0.07      28      53 ..      29      54 ..       2      60 .. 0.72
   2 ?   -0.4   0.0      0.34        99      83     110 ..     103     130 ..      92     154 .. 0.86

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 0.00024
   TIGR00635 28 ealdhvllyGPPGlGkttlakiiake 53
                +     l+ GP G+Gkt lak + ++
  MMETSP1137-20121227|9782_1 29 QPTGSFLFLGPTGVGKTELAKALNAD 54
                334568999***********987665 PP

  == domain 2    score: -0.4 bits;  conditional E-value: 0.34
   TIGR00635  83 dvlfiDeihrlskaveellypamedfkl 110
                  v+ +Dei + ++ v  +l +++++ +l
  MMETSP1137-20121227|9782_1 103 TVVLLDEIEKAHPRVLPVLLQVLDEGRL 130
                 68999*************9999997665 PP

>> TIGR00678  holB: DNA polymerase III, delta' subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00018     0.054      10      39 ..      27      56 ..      19      77 .. 0.86
   2 ?   -2.2   0.0         2   5.9e+02      93     122 ..      98     127 ..      91     129 .. 0.80

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 0.00018
   TIGR00678 10 kgrlahAlLfaGpeGvGkealaealakall 39
                 ++ + ++Lf Gp GvGk++la+al + l+
  MMETSP1137-20121227|9782_1 27 ADQPTGSFLFLGPTGVGKTELAKALNADLF 56
                56677899****************998887 PP

  == domain 2    score: -2.2 bits;  conditional E-value: 2
   TIGR00678  93 lesgrrvviiedaealneaaaNaLLKtLEE 122
                  + ++ vv++++ e+ ++     LL +L E
  MMETSP1137-20121227|9782_1  98 RKRPYTVVLLDEIEKAHPRVLPVLLQVLDE 127
                 567899999999999999988888888877 PP

>> TIGR00368  TIGR00368: Mg chelatase-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   0.0   0.00085      0.25     212     252 ..      32      74 ..      12      80 .. 0.70
   2 ?    1.2   0.0     0.076        22     298     355 ..     104     159 ..      97     249 .. 0.67

  Alignments for each domain:
  == domain 1    score: 7.7 bits;  conditional E-value: 0.00085
   TIGR00368 212 hnllllGPPGsGktllakrlqgll..Peltneealetarvlsl 252
                   +l+lGP G Gkt lak l++ l   ++   ++ e ++ +s+
  MMETSP1137-20121227|9782_1  32 GSFLFLGPTGVGKTELAKALNADLfnGDFVRLDMSEYSEAHSV 74 
                 5689***************998652234444555555555555 PP

  == domain 2    score: 1.2 bits;  conditional E-value: 0.076
   TIGR00368 298 vlfldellefkrkvldalrePledgeisisrakakilyParfqlvaamnpsPtGhygd 355
                 v++lde+   + +vl +l + l++g+++ s+ +  ++  ++  ++++ n   t  + +
  MMETSP1137-20121227|9782_1 104 VVLLDEIEKAHPRVLPVLLQVLDEGRLTDSKGR--VVDFTNTAIILTSNIGATELLAG 159
                 8899********************999888765..44335566777777777766666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (298 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       230  (0.0560702); expected 82.0 (0.02)
Passed bias filter:                      210  (0.0511945); expected 82.0 (0.02)
Passed Vit filter:                        50  (0.0121892); expected 4.1 (0.001)
Passed Fwd filter:                        14  (0.00341297); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.41u 0.18s 00:00:00.59 Elapsed: 00:00:00.55
# Mc/sec: 715.14
//
Query:       MMETSP1137-20121227|9783_1  [L=528]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (528 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       125  (0.0304729); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.16s 00:00:00.54 Elapsed: 00:00:00.50
# Mc/sec: 1393.80
//
Query:       MMETSP1137-20121227|9786_1  [L=286]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      0.001   16.2  55.9     0.0013   15.9  38.8    1.2  1  TIGR02794 tolA_full: protein TolA
  ------ inclusion threshold ------
       0.72    5.2  22.2       0.89    4.9  15.4    1.0  1  TIGR00927 2A1904: K+-dependent Na+/Ca+ exchanger
        1.3    5.3   9.9        2.5    4.4   6.9    1.4  1  TIGR02868 CydC: thiol reductant ABC exporter, CydC subunit


Domain annotation for each model (and alignments):
>> TIGR02794  tolA_full: protein TolA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9  38.8   9.2e-07    0.0013      98     235 ..      48     172 ..      44     276 .. 0.57

  Alignments for each domain:
  == domain 1    score: 15.9 bits;  conditional E-value: 9.2e-07
   TIGR02794  98 kelekqraaaekaakkaeeaakekeekkkqaeeakakqaaEa.kakaeaeaKaekkakeeAakkaEeeakakaa.aeakkkaEa..eeakkkaeaea..k.KakaeaeaKakaeeakaKaeaeAkaKAeaeAkaKaeaeakakak 235
                 +++  q a+  +  kkae +a++++  kk aee  +++aaE+ +a ae e      ak   +kkaE+ea++kaa ae k++aEa  ee  ++  a +  k K k+ a +K +ae  +a+        A+ eA +Kaea++k k +
  MMETSP1137-20121227|9786_1  48 QKT--QSAQMVD--KKAEGQARKAA--KKMAEES-RQAAAEQaAADAEWE----VGAKK-GNKKAEAEAEKKAAkAERKAAAEAelEEEMRQLTAPKggKdKSKKAASKKTRAE-IAAEX-----DMARLEAGEKAEAKKK-K-E 172
                 344..2333333..45566665333..6777666.466777733334433....22222.366777777777766777777777432334443333211234444444444444.22222.....2467777777774444.2.1 PP

>> TIGR00927  2A1904: K+-dependent Na+/Ca+ exchanger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9  15.4   0.00065      0.89     765     905 ..      59     204 ..      35     233 .. 0.39

  Alignments for each domain:
  == domain 1    score: 4.9 bits;  conditional E-value: 0.00065
   TIGR00927 765 eteaegekdeesggeaeqegeseekaeeeseGeieaerkgedegegeieakeae..vkGeeeee.eveaeeeteaeGdedegeieaeee..Geekededegeieakeevevegdedeteieaeeeaev..kededeGeieaeedgevk 905
                 ++e++++k  ++  e+ ++  + e+a ++ e e+ a+ kg+++ e+e+e+k a+   k   e+e e e  + t ++G +d+ +  a ++   e+  + d + +ea+e++e++ +++  +  ++e   v  ++++  G+iea +  e  
  MMETSP1137-20121227|9786_1  59 KAEGQARKAAKKMAEESRQ-AAAEQAAADAEWEVGAK-KGNKKAEAEAEKKAAKaeRKAAAEAElEEEMRQLTAPKGGKDKSKKAASKKtrAEIAAEXDMARLEAGEKAEAKKKKEIKDTGGNEYIGVleENKNMIGDIEASGIDEAI 204
                 1112222222222222222.22223333344444443.44444444444333320022222222233333344445544444444333311233333444444444444444443322322222222200112222333333333333 PP

>> TIGR02868  CydC: thiol reductant ABC exporter, CydC subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   6.9    0.0018       2.5     156     247 ..      39     129 ..      35     132 .. 0.84

  Alignments for each domain:
  == domain 1    score: 4.4 bits;  conditional E-value: 0.0018
   TIGR02868 156 alvlaaallvalvvaplvslraarsaeqalarlrselaaqlldllegaaelvvaGaleavlaqveeaereltraekraaaaealgaaltlla 247
                 +l+l+a+ +     a +v  +a+ +a +a+++  +e ++++++  ++ ae+ v Ga++   ++ +eae+++++ae++aaa ++l + + +l 
  MMETSP1137-20121227|9786_1  39 GLLLLAVRVQKTQSAQMVDKKAEGQARKAAKKMAEESRQAAAEQAAADAEWEV-GAKKGNKKAEAEAEKKAAKAERKAAAEAELEEEMRQLT 129
                 5555566666666677788888888999999999999999999999999**98.999999999999*****************999988875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (286 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       393  (0.0958069); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.33u 0.18s 00:00:00.51 Elapsed: 00:00:00.75
# Mc/sec: 503.32
//
Query:       MMETSP1137-20121227|9787_1  [L=309]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (309 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        71  (0.0173086); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.16s 00:00:00.41 Elapsed: 00:00:00.30
# Mc/sec: 1359.49
//
Query:       MMETSP1137-20121227|9788_1  [L=272]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (272 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        89  (0.0216967); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.14s 00:00:00.37 Elapsed: 00:00:00.37
# Mc/sec: 970.30
//
Query:       MMETSP1137-20121227|9789_1  [L=126]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (126 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        61  (0.0148708); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.17s 00:00:00.32 Elapsed: 00:00:00.39
# Mc/sec: 426.43
//
Query:       MMETSP1137-20121227|9790_1  [L=634]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (634 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        94  (0.0229157); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.13s 00:00:00.52 Elapsed: 00:00:00.56
# Mc/sec: 1494.31
//
Query:       MMETSP1137-20121227|9791_1  [L=115]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (115 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       134  (0.032667); expected 82.0 (0.02)
Passed bias filter:                      129  (0.0314481); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.18s 00:00:00.35 Elapsed: 00:00:00.28
# Mc/sec: 542.10
//
Query:       MMETSP1137-20121227|9792_1  [L=273]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (273 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        60  (0.014627); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.14s 00:00:00.37 Elapsed: 00:00:00.32
# Mc/sec: 1126.03
//
Query:       MMETSP1137-20121227|9794_1  [L=161]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (161 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       136  (0.0331546); expected 82.0 (0.02)
Passed bias filter:                      120  (0.029254); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.17s 00:00:00.37 Elapsed: 00:00:00.34
# Mc/sec: 625.01
//
Query:       MMETSP1137-20121227|9795_1  [L=628]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (628 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        67  (0.0163335); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.15s 00:00:00.54 Elapsed: 00:00:00.46
# Mc/sec: 1801.94
//
Query:       MMETSP1137-20121227|9796_1  [L=206]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.013   12.3   0.0      0.017   12.0   0.0    1.1  1  TIGR00225 prc: C-terminal processing peptidase


Domain annotation for each model (and alignments):
>> TIGR00225  prc: C-terminal processing peptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   4.2e-06     0.017      53     117 ..     111     180 ..      89     188 .. 0.80

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 4.2e-06
   TIGR00225  53 iGiqvqmedd...eivivsplegsPAekag..ikpgDkIikvdgksvagmelddavelirGkkgtkvkle 117
                 +Gi   ++++    + + ++l+++ A+ a   + ++D++++vd + v g + +  +e+i+   g   +l 
  MMETSP1137-20121227|9796_1 111 MGIAFVENEGecgGVYVDEVLADGSAAGASpsLMAKDQLVAVDSTVVLGASFETSIEAIKATTGETTRLV 180
                 55555555554557999999999999999888****************************9998877765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (206 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        99  (0.0241346); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.18u 0.16s 00:00:00.34 Elapsed: 00:00:00.45
# Mc/sec: 604.22
//
Query:       MMETSP1137-20121227|9797_1  [L=201]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (201 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        49  (0.0119454); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.13s 00:00:00.30 Elapsed: 00:00:00.31
# Mc/sec: 855.80
//
Query:       MMETSP1137-20121227|9798_1  [L=74]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (74 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        62  (0.0151146); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.18s 00:00:00.31 Elapsed: 00:00:00.30
# Mc/sec: 325.57
//
Query:       MMETSP1137-20121227|9799_1  [L=496]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.02   10.1   1.9      0.026    9.7   1.3    1.0  1  TIGR03839 termin_org_P1: adhesin P1


Domain annotation for each model (and alignments):
>> TIGR03839  termin_org_P1: adhesin P1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   1.3   6.3e-06     0.026     187     290 ..     372     471 ..     341     490 .. 0.69

  Alignments for each domain:
  == domain 1    score: 9.7 bits;  conditional E-value: 6.3e-06
   TIGR03839 187 kaaveyeqlqrglqkqkteskatessfgatfrlkvksavadaaksgeklaeatassassGsassaarggasadtkakalkv.evekgsdsesntqlqkndlaeap 290
                 +   ++  + + l+  +t+  +++ ++    rl+++   ad  +   + a ++++s s+ ++ sa   ga+a+++a+a +    ++g++ + ++ +++++ a+a+
  MMETSP1137-20121227|9799_1 372 EHGTQWVIIAKALNTXRTDGAVKNRYI----RLHKNGKAADPYAAASTTAAGSSTSSSASAGASA-ITGAAANARARAKAGaAAREGTSIGIGSAVPTSQNARAV 471
                 555555555566666666655555555....9****99***999999999888888877777774.556666666666554145667777888888766666554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (496 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       122  (0.0297416); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.13s 00:00:00.49 Elapsed: 00:00:00.50
# Mc/sec: 1309.33
//
Query:       MMETSP1137-20121227|9801_1  [L=71]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (71 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        36  (0.00877621); expected 82.0 (0.02)
Passed bias filter:                       35  (0.00853242); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:00.34
# Mc/sec: 275.62
//
Query:       MMETSP1137-20121227|9802_1  [L=553]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.093    9.0   0.8       0.15    8.4   0.6    1.2  1  TIGR03904 SAM_YgiQ: uncharacterized radical SAM protein YgiQ


Domain annotation for each model (and alignments):
>> TIGR03904  SAM_YgiQ: uncharacterized radical SAM protein YgiQ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   0.6   3.6e-05      0.15     288     319 ..     147     180 ..     136     189 .. 0.82

  Alignments for each domain:
  == domain 1    score: 8.4 bits;  conditional E-value: 3.6e-05
   TIGR03904 288 paleeikfsvtshrGCfGgCs..FCaiteHqgri 319
                 +a++  +  v + rGC +gC+   Ca++eH+g++
  MMETSP1137-20121227|9802_1 147 DAFRRAHAEVRAIRGCTAGCTltLCAVNEHRGEL 180
                 67888888999*********7337*******986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (553 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        79  (0.0192589); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.11s 00:00:00.47 Elapsed: 00:00:00.77
# Mc/sec: 947.92
//
Query:       MMETSP1137-20121227|9803_1  [L=207]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (207 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       141  (0.0343735); expected 82.0 (0.02)
Passed bias filter:                      115  (0.0280351); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.16s 00:00:00.36 Elapsed: 00:00:00.94
# Mc/sec: 290.66
//
Query:       MMETSP1137-20121227|9804_1  [L=443]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (443 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        84  (0.0204778); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.15s 00:00:00.46 Elapsed: 00:00:00.52
# Mc/sec: 1124.45
//
Query:       MMETSP1137-20121227|9805_1  [L=266]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (266 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       133  (0.0324232); expected 82.0 (0.02)
Passed bias filter:                      123  (0.0299854); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.16s 00:00:00.39 Elapsed: 00:00:00.41
# Mc/sec: 856.32
//
Query:       MMETSP1137-20121227|9806_1  [L=250]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.6e-05   19.4   0.0    8.5e-05   19.3   0.0    1.3  1  TIGR00860 LIC: cation transporter family protein


Domain annotation for each model (and alignments):
>> TIGR00860  LIC: cation transporter family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.0   2.1e-08   8.5e-05     151     290 ..     115     249 ..      19     250 .] 0.87

  Alignments for each domain:
  == domain 1    score: 19.3 bits;  conditional E-value: 2.1e-08
   TIGR00860 151 irltltlaCpmdlknfPlDvQnCslkleSygYttddiklelkeqeavqvdeslfielpefellgvlktrseteetstgeYselklslvlrRrilYYllqlyiPsillvilslvsFwlnkdasgarvsLgittlLtlttfs 290
                  r+ +t     +l+ fP+D Q  +++le     + +i      +e+     ++  e pef+l   l+  +   +   ++ +el++ + l+R   YY+ + +    l++ +sl  + +    +g r  L  t++Lt ttf 
  MMETSP1137-20121227|9806_1 115 FRFAVTVKERFNLRTFPFDIQYLNIRLEID--NGGEITCATTDDEPAVFLAGV--ESPEFHLPPDLHCVYG-VHPGPNDMEELHIVVFLKRAEPYYMWNGFFLLWLISTVSLATWSVHWRLVGSRLRLDLTLVLTATTFK 249
                 566667777789*********999999954..444688888888888888888..*******998888888.5899999***********************************************************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (250 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        69  (0.0168211); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.20u 0.15s 00:00:00.35 Elapsed: 00:00:00.48
# Mc/sec: 687.44
//
Query:       MMETSP1137-20121227|9807_1  [L=140]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (140 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        65  (0.0158459); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.16s 00:00:00.33 Elapsed: 00:00:00.25
# Mc/sec: 739.14
//
Query:       MMETSP1137-20121227|9808_1  [L=275]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (275 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        94  (0.0229157); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.15s 00:00:00.37 Elapsed: 00:00:00.38
# Mc/sec: 955.18
//
Query:       MMETSP1137-20121227|9809_1  [L=353]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.6e-09   32.5   0.0      6e-09   32.1   0.0    1.1  1  TIGR03903 TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
     0.0074   13.6   0.1      0.015   12.6   0.1    1.5  1  TIGR03724 arch_bud32: Kae1-associated kinase Bud32


Domain annotation for each model (and alignments):
>> TIGR03903  TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.1   0.0   2.9e-12     6e-09      82     237 ..     149     290 ..     111     300 .. 0.77

  Alignments for each domain:
  == domain 1    score: 32.1 bits;  conditional E-value: 2.9e-12
   TIGR03903  82 grLmlqvLDalaaahdaGvvhRDLkPqnimvsaadveshakvLDFGigaLlpgvedadeatltrttevlGsPaYaaPeqLRgepvtaksDlYaWGLivleCLtGkrvvqGasvaevlykqLsPvdvslPsaiaghpLgevLRkalnkdvrqRaasa 237
                 g  ++q+L +l + h+  ++hRDLkP ni v+ ++     k+ D G +    +  +         +   GsP Y  Pe        aksD+++ G +  e L   +  q   + e   + L  +++ lP +  +++L  ++ + l+kd+ +R ++ 
  MMETSP1137-20121227|9809_1 149 GIWIAQMLLGLLHMHETXLIHRDLKPANIFVTRTGI---IKIGDLGGSQHIRDLSE-------ECSSQYGSPLYMCPEVWSRGQCSAKSDIWSLGCVAYELLQLFPPFQMPCLTE---RVLHAQPLPLPTT-YSLKLRGLIMSMLHKDPAKRPTTH 290
                 66789***************************9996...68889998877777766.......345568**********999999*************99997776666665554...5666777777765.467788888888888887776654 PP

>> TIGR03724  arch_bud32: Kae1-associated kinase Bud32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.6   0.1   7.3e-06     0.015     103     134 ..     159     191 ..     116     204 .. 0.73

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 7.3e-06
   TIGR03724 103 vgklHkagivhgDlttsNiivkddklyli.DfG 134
                 + ++H++ ++h Dl ++Ni v+ + ++ i D+G
  MMETSP1137-20121227|9809_1 159 LLHMHETXLIHRDLKPANIFVTRTGIIKIgDLG 191
                 5579*****************765554333555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (353 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        67  (0.0163335); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.27u 0.15s 00:00:00.42 Elapsed: 00:00:00.41
# Mc/sec: 1136.39
//
Query:       MMETSP1137-20121227|9810_1  [L=328]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (328 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        99  (0.0241346); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.15s 00:00:00.42 Elapsed: 00:00:00.40
# Mc/sec: 1082.31
//
Query:       MMETSP1137-20121227|9811_1  [L=98]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (98 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        57  (0.0138957); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.14s 00:00:00.27 Elapsed: 00:00:00.27
# Mc/sec: 479.07
//
Query:       MMETSP1137-20121227|9813_1  [L=623]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.2e-24   85.0  20.1    1.7e-24   84.5  13.9    1.2  1  TIGR00813 sss: transporter, solute:sodium symporter (SSS) family
    4.4e-22   76.3  18.4    6.1e-22   75.8  12.7    1.1  1  TIGR02121 Na_Pro_sym: sodium/proline symporter
    1.9e-18   64.6  12.5      3e-18   63.9   8.6    1.2  1  TIGR02119 panF: sodium/pantothenate symporter
    2.6e-17   60.3  16.8    1.9e-11   40.9   1.3    2.3  2  TIGR03648 Na_symport_lg: probable sodium:solute symporter, VC_2705 subfamily


Domain annotation for each model (and alignments):
>> TIGR00813  sss: transporter, solute:sodium symporter (SSS) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.5  13.9   1.7e-27   1.7e-24       2     408 ..      11     403 ..      10     411 .. 0.80

  Alignments for each domain:
  == domain 1    score: 84.5 bits;  conditional E-value: 1.7e-27
   TIGR00813   2 flagrslgglvvaaslvasnisasqllGlpgeayasG...laiiflelaalvllivlgllfvpvyikagvltmpeylekRFgkrilrilsvlililviflkisvdlfsgalllelvlGl..dlylsllllalitilYtviGGlkAvvwtDtlqavimivgvlilpvvafsevgglesvvekakqaaptvvsvddllkleldpltsdlpwgalvfGliivallywcldqvivqRllaaksaksakkgvlisgvlkllpmllavlpGliaralytdvdpalagavqqasdqaypllvvellp....pglaglflav.llaAvlStlssilnsastvfteDlYkkiirkaaekekkivsrgrvavlvaiviaivvaaaqsgqvlqlvqsafgilgapllavfvLglfwkrvnakGAlvgl 408
                 f+ag+slg +v+ ++++as  s+ +++G+p ea+++G   l  i  +l +++ ++ ++       + ++ ++  ++++ RF ++ lr+ +++il++ ++++++++ +     +++++Gl  +   + +++ ++++++  iGGl++v++tD+ q+++mi+++++++    +  gg +s +   k+  + ++ +  +++ ++   +  l w   ++ l++             qR++a+ + ks+k +  +  +   l ml+ v+ G +++ l +           q++   +   v el++      +agl++ v  +aA++St++s+l+++  +++  + ++ +++a+   +++  +++v+ + ++++++++a+   g + +l +  +g+   ++ ++++  +f++r++  + ++++
  MMETSP1137-20121227|9813_1  11 FVAGKSLGSFVTVMTIFASLFSGXTMVGVPNEAFKDGykaLRWIPSKLFMAFGYMCTSPRLRRXSLIRHYHSPLDFITDRFRSQFLRYSIFVILLVPSIIYLAAQPITLKGNFNDLFGLedNNVIAPVAICAFILVLEWIGGLNVVAYTDSAQGILMILAFVLMSSTLCHLYGGWGSDIFNPKTYPKPNFFQVPSTEDQVAMWSFSLQW-ISFAALPHF-----------QQRTYASGEFKSMKLAYFVISLAPWLTMLVGVFSGTLGVYLLQG----------QETSNPFTGVVAELMGasgfGYVAGLLILVgSVAAIISTADSLLIATTHMVMSEVVNPNMKNASH--ARVSFVSKVVSFTVMALGLLIALTDDGALSDLAAVQNGMCLQAVPTLLIGLFFSPRFTPHAWVIAV 403
                 89***********************************4444444444444444444444444444556688999*******************************9999999*******4435666788888999999************************************77766666665442323444444444444445555.444555555...........8*****************************************86..........233344555666777765556677776665268************************99988877..999999*********************************999876666555567899876655443 PP

>> TIGR02121  Na_Pro_sym: sodium/proline symporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.8  12.7   5.9e-25   6.1e-22      30     440 ..       9     422 ..       4     449 .. 0.82

  Alignments for each domain:
  == domain 1    score: 75.8 bits;  conditional E-value: 5.9e-25
   TIGR02121  30 dyvlggrslgpfvaalsagasdmsgWlllGlPGalyvtGlsel.wiaiGlliGayinwklvakrlrvytevakdaitlPdflekrledkskvlrivsaliilvfftlytssGlvaGgklfesafGldyklalligali..vviytflGGflavswtdlvqgllmlvalvlvPivallklggls.eileaveaidpekldllkgasviaiisl.laWGlGyfGqPhiivrfmaiksakelkkarligisWmilsllGavlvglvGiayvekvpgvevadk..ekifillskvlfnPliaGl.llaailaaimstissqllvsssalaedlykallkkeasekelvlvgrlsvlvvaiiaivlalnpdssvlelvsyaWaGfGaafgpvvllslywk.rlt......ragalagmvigavtvivwkea 440
                 +++++g+slg fv+ ++  as  sg  ++G+P   +  G ++l wi   l +     ++  ++rlr  + +++    l df+++r+   s++lr    +i+lv  ++y ++  ++    f+  fGl+ +  +  +a++  +++  ++GG   v++td  qg+lm++a+vl+     +  gg++ +i++  +  +p+ +++ +  + +a+ s  l W + +   Ph   r  a  + k++k a ++      l++l  v+ g +G+  ++ +   e++++    +  l+    f  ++aGl +l   +aai+st +s l+ ++  ++ ++    +k +as+  +  v+++  + v+ + +++al+ d  + +l +    G+     p +l+ l+++ r+t        galag++++ v+   w+e 
  MMETSP1137-20121227|9813_1   9 SHFVAGKSLGSFVTVMTIFASLFSGXTMVGVPNEAFKDGYKALrWIPSKLFMA--FGYMCTSPRLRRXSLIRHYHSPL-DFITDRFR--SQFLRYSIFVILLVPSIIYLAAQPITLKGNFNDLFGLEDNNVIAPVAICafILVLEWIGGLNVVAYTDSAQGILMILAFVLMSSTLCHLYGGWGsDIFNPKTYPKPNFFQVPSTEDQVAMWSFsLQW-ISFAALPHFQQRTYASGEFKSMKLAYFVISLAPWLTMLVGVFSGTLGVYLLQGQ---ETSNPftGVVAELMGASGFG-YVAGLlILVGSVAAIISTADSLLIATTHMVMSEVVNPNMK-NASHARVSFVSKVVSFTVMALGLLIALTDDGALSDLAAV-QNGMCLQAVPTLLIGLFFSpRFTphawviAVGALAGFITTVVINYTWNED 422
                 67899***********************************9865998888764..4799**********777665554.9******6..78999877777788899********9999********98877655554422566789***************************9999999997257888888999******999999999852666.8999*********************998877778999999*******9888876...44444415555556666665.66775168899**********9999999999999887665.678888999*******************99999998765.68999999999***999874444221111567777777777777777663 PP

>> TIGR02119  panF: sodium/pantothenate symporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.9   8.6   2.9e-21     3e-18      34     395 ..       9     371 ..       3     440 .. 0.81

  Alignments for each domain:
  == domain 1    score: 63.9 bits;  conditional E-value: 2.9e-21
   TIGR02119  34 eyflGnrslgGfvlamtlvatyvsassfigGpGiayklG...lGwvllamiqvptvylvlgvlGkkfailarklnavtlvdllkaryknkllvllsslsllvfllsaivaqfiGGarllesltGlsyltal..llfslsvliyvliGGfravvltdalqgivmllgtiilliavikaggGv.ekiveklkeidpnlvtpfgadgsldkafvasfwilvgiGvvglpqiavralsykdskalhraliigtivvgilmlgmhlvGvlgravlpdlkvsd...kvipllalkvlppilaGif.laaplaaimstvdsllllssstlikdlylnylekeakekkvkkisllitlllgllvllaalkppdliiwlnl 395
                  +f+ ++slg fv  mt+ a+  s  +++g p  a+k G   l w+  + + ++ +y++ +   ++ +++ r++++    d++ +r+++++l +   ++llv  +  ++aq i     ++ l Gl  ++ +  +  ++ +l+   iGG+  v+ td+ qgi+m+l+ +++  ++ +  gG   +i +  +  +pn+ +  ++++++++   +  wi       +lp+   r+ +  + k+++ a  + ++   + ml   + G lg  +l + + s+    v+  l+     +++aG++ l + +aai+st dsll+ ++ +++ ++ +n   k+a++ +v+ +s ++++ + +l ll+al     +  l  
  MMETSP1137-20121227|9813_1   9 SHFVAGKSLGSFVTVMTIFASLFSGXTMVGVPNEAFKDGykaLRWI-PSKLFMAFGYMCTSPRLRRXSLI-RHYHS--PLDFITDRFRSQFLRYSIFVILLVPSIIYLAAQPITLKGNFNDLFGLEDNNVIapVAICAFILVLEWIGGLNVVAYTDSAQGILMILAFVLMSSTLCHLYGGWgSDIFNPKTYPKPNFFQVPSTEDQVAMWSFSLQWI----SFAALPHFQQRTYASGEFKSMKLAYFVISLAPWLTMLVGVFSGTLGVYLLQGQETSNpftGVVAELMGASGFGYVAGLLiLVGSVAAIISTADSLLIATTHMVMSEV-VNPNMKNASHARVSFVSKVVSFTVMALGLLIALTDDGALSDLAA 371
                 579**********************************984446676.57788999999999999999998.55553..57*************999999999999999*****************98776611555666788889*********************999998888888887256778888899**998777777666554455565....6679*******************9988888877888888899*********9999873335889999999*******8527899***********999888777776.899999****************9999999999877665555544 PP

>> TIGR03648  Na_symport_lg: probable sodium:solute symporter, VC_2705 subfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.9   1.3   1.8e-14   1.9e-11      24     192 ..       7     180 ..       4     189 .. 0.82
   2 !   24.4   5.1   1.8e-09   1.9e-06     361     481 ..     295     416 ..     282     444 .. 0.78

  Alignments for each domain:
  == domain 1    score: 40.9 bits;  conditional E-value: 1.8e-14
   TIGR03648  24 tkefyvagrkvpavanGmAtaadWmsaAsfismagliallGydglaylmG...WtgGyvllalllApylRkfg...kftvp.dfvgdRyysktaRlvaviaailisftYvvgqirgvGvvfsrflevdielgv..liglavvlvyavlgGmkgvtytqvaqyvvlivaylvpvvflsl 192
                 +  ++vag+++ +++  m + a  +s    +++       Gy++l ++        Gy    ++  p lR+ +   ++  p df+ dR+ s+  R    +++++ s++Y+++q   +   f  +++++ +  +  +   a +lv   +gG+  v+yt  aq +++i+a+++    l +
  MMETSP1137-20121227|9813_1   7 MVSHFVAGKSLGSFVTVMTIFASLFSGXTMVGVPNEAFKDGYKALRWIPSklfMAFGY----MCTSPRLRRXSlirHYHSPlDFITDRFRSQFLRYSIFVILLVPSIIYLAAQPITLKGNFNDLFGLEDNNVIapVAICAFILVLEWIGGLNVVAYTDSAQGILMILAFVLMSSTLCH 180
                 56789***************************************99874411133344....68899999976443677777***************99**************888887888887775444331145556789999************************98877765 PP

  == domain 2    score: 24.4 bits;  conditional E-value: 1.8e-09
   TIGR03648 361 vvialvaAGglaAAlstaaGLllvissaisHDllkkllnpkasekkrllvarvallvviviaaylalnkpgfiaqvvalAFglaaaslFpalvlGifwk.rankegai..agmlaGllvtllyi 481
                 v   l+  G++aA +sta+ Ll++ +  +  ++++  + ++as+++  +v++v+ ++v+++  ++al++ g ++++ a+  g+  +++ p+l++G+f + r + ++ +  +g laG+++t++  
  MMETSP1137-20121227|9813_1 295 VAGLLILVGSVAAIISTADSLLIATTHMVMSEVVNPNM-KNASHARVSFVSKVVSFTVMALGLLIALTDDGALSDLAAVQNGMCLQAV-PTLLIGLFFSpRFTPHAWViaVGALAGFITTVVIN 416
                 33346889***************887666666665554.456777777899********************************98875.9*****97643777666442258888888877643 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (623 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       187  (0.0455875); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.49u 0.16s 00:00:00.65 Elapsed: 00:00:00.79
# Mc/sec: 1040.88
//
Query:       MMETSP1137-20121227|9814_1  [L=480]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (480 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       140  (0.0341297); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.16s 00:00:00.50 Elapsed: 00:00:00.32
# Mc/sec: 1979.84
//
Query:       MMETSP1137-20121227|9815_1  [L=193]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (193 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       113  (0.0275475); expected 82.0 (0.02)
Passed bias filter:                      100  (0.0243784); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.13s 00:00:00.33 Elapsed: 00:00:00.32
# Mc/sec: 796.06
//
Query:       MMETSP1137-20121227|9816_1  [L=352]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        4.6    4.4   7.3        3.7    4.7   0.5    2.3  2  TIGR03943 TIGR03943: TIGR03943 family protein


Domain annotation for each model (and alignments):
>> TIGR03943  TIGR03943: TIGR03943 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   0.5   0.00091       3.7       9      67 ..     149     202 ..     145     220 .. 0.63
   2 ?    2.8   0.7    0.0033        14      13      80 ..     234     306 ..     231     325 .. 0.66

  Alignments for each domain:
  == domain 1    score: 4.7 bits;  conditional E-value: 0.00091
   TIGR03943   9 inpryfplllaaavvllllalvqllrdvrekeeeaehhhehktklkrrlvylllllpil 67 
                 ++  y  + +++a+ l++++++  +r v  +++         + ++  + +ll+ +++l
  MMETSP1137-20121227|9816_1 149 VQAIYATYYVFSAIGLAAFGIILGWRVVSVGDKAV-----LFKTSSICVAALLIHAVAL 202
                 7788999*******************777765332.....1122222222222222222 PP

  == domain 2    score: 2.8 bits;  conditional E-value: 0.0033
   TIGR03943  13 yfplllaaavvllllalvqllrdvrekeeea.....ehhhehktklkrrlvylllllpillgllvppaalgsd 80 
                 +f  ++++av+ + +alvq+   v  +         ++ +     +   +++++l+++i+++ +   ++ gs+
  MMETSP1137-20121227|9816_1 234 LFLAVYFSAVLCISFALVQTRLAVATAPMGSaapkrTAYRLLAGTSFYLFIAWILTVVIAFLWIANGEVYGSS 306
                 5677999999999999999999888887776554322222222223334566666666666666665665555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (352 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       150  (0.0365675); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.25u 0.14s 00:00:00.39 Elapsed: 00:00:00.42
# Mc/sec: 1106.19
//
Query:       MMETSP1137-20121227|9818_1  [L=450]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (450 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        68  (0.0165773); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.13s 00:00:00.43 Elapsed: 00:00:00.51
# Mc/sec: 1164.61
//
Query:       MMETSP1137-20121227|9819_1  [L=100]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (100 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        53  (0.0129205); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.18s 00:00:00.32 Elapsed: 00:00:00.38
# Mc/sec: 347.34
//
Query:       MMETSP1137-20121227|9820_1  [L=277]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (277 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        53  (0.0129205); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.15s 00:00:00.36 Elapsed: 00:00:00.37
# Mc/sec: 988.13
//
Query:       MMETSP1137-20121227|9821_1  [L=379]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (379 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        71  (0.0173086); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.16s 00:00:00.44 Elapsed: 00:00:00.78
# Mc/sec: 641.33
//
Query:       MMETSP1137-20121227|9822_1  [L=495]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.4e-91  303.0  17.2    9.4e-91  302.7  11.9    1.0  1  TIGR00879 SP: MFS transporter, sugar porter (SP) family
    3.1e-14   50.4  11.2    5.4e-14   49.7   7.8    1.3  1  TIGR00898 2A0119: cation transport protein
    7.7e-13   45.9   8.7    7.7e-13   45.9   6.0    3.1  3  TIGR00895 2A0115: MFS transporter, aromatic acid:H+ symporter (AAHS) family
    4.7e-11   40.1  10.6    6.1e-08   29.8   0.5    2.2  2  TIGR00887 2A0109: phosphate:H+ symporter
    2.6e-07   27.9  17.2    6.4e-05   20.0  11.9    2.4  1  TIGR00883 2A0106: MFS transporter, metabolite:H+ symporter (MHS) family protein
      4e-07   28.1  31.9    5.9e-05   21.0   7.0    3.9  3  TIGR00880 2_A_01_02: multidrug resistance protein
      8e-05   20.0  12.8     0.0095   13.2   1.4    3.6  3  TIGR00710 efflux_Bcr_CflA: drug resistance transporter, Bcr/CflA subfamily


Domain annotation for each model (and alignments):
>> TIGR00879  SP: MFS transporter, sugar porter (SP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  302.7  11.9   1.6e-93   9.4e-91      39     510 .]      13     490 ..       6     490 .. 0.89

  Alignments for each domain:
  == domain 1    score: 302.7 bits;  conditional E-value: 1.6e-93
   TIGR00879  39 sellltpallg.snyvfvallsllaalagllfgYdtavisaalallkfefkftsnlsdasssqwglvvsillvGgligalfagylsdrfgrkkslliiallfvigailsllaatalsvevlivgRvllGigvGiasalvPlYisEiApkalRgalvslyqlaitfGilvaaifg.sgklvanntlgwriplglqlipalllllglfflPesprwLvekgke.........eeArkslarlrgeksedkelleelelikikreiekesvnksgaelfslkkriirrlllgvvlqafqQltGiNaimyYsptifenlGvstdtallvsiivgavnvaaTfvaiflvdrfGRrtllliGaagmaiclfvlgilgvssvtg.....sskaasivaivfillfiaayalgigpvvwvlvsEifplsvRpkgiaiavaanwlanfiiallfpimlen......sigqgvvFiffgalnvlalilvyfflpetkgltleei 510
                 s+ ll+p++    + +fv+l  ++ alag+lfgYd +  s+a+++++    +        s+ ++l++s+ l+G+++g++ + +l+  +gr++ +l +a l+v+g++ls+++ ++  +  + vgR++ G+g+  +   +P+YisE++p ++Rg+lvs  + +i+fGi+ ++ ++   + v +++ ++r + ++ l++    ++g+f +P sprwL+ +  +         ++A k+l+r r + s +++++e   + +i++++ +   ++s+++l++     +r+l+ g+ l   qQltG  +++yY  +ife +G+ +  + ++++i+ga +++aT++a+  vd+fGRr+ll++G+ +m++ l+vlg+ +++s+ +            v++v +++++ +y++g+gp++w+++sE+fpl++R+ + + av++n+ +n++ +++   + ++      ++gq + F ++g+l+vl+l++v+ f+petkg++leei
  MMETSP1137-20121227|9822_1  13 SAMLLPPMGRAwAQRWFVYLAFFFPALAGFLFGYDIGAASGAVNSVNELVGLS-------SIMKSLLTSSSLIGATVGSIAVFWLGEPLGRRREILTGATLYVLGSALSAISPNGIILYSALVGRAIYGLGIAFSMHAAPVYISEMSPSDIRGQLVSAKEGFIVFGIMAGFSVSaACQAVMSKDAAFRGIWAVPLLIGTGIFVGMFSMPPSPRWLLLQASRqlasankyrDQAVKALQRFRRGASDAQIEAE---VAEIEQSLGT-DFETSWKDLLDA----RRALVAGLGLISLQQLTGQPSVLYYQQQIFEAAGFGS-FSKYATVIIGAAKLIATLFAVRYVDNFGRRPLLFVGTTMMLVSLVVLGTGFFFSTREgdsvtLPPGWPPVIVVTLVAYVCGYQVGFGPIAWLIISEVFPLKTRTRALSAAVTVNFGFNLLMTFTLQLLQDAfdsispGKGQSYLFYLYGVLCVLSLVFVWAFVPETKGKSLEEI 490
                 555666665542578********************************999988.......9******************************************************9999*******************************************************95566668***********9999999***************9775431111111114567777777766666666666...5556666666.445558888885....689**********************************.789*********************************************8888877778776666667789****************************************************999998888******************************************8 PP

>> TIGR00898  2A0119: cation transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.7   7.8   9.2e-17   5.4e-14     119     505 ..      60     489 ..      43     490 .. 0.72

  Alignments for each domain:
  == domain 1    score: 49.7 bits;  conditional E-value: 9.2e-17
   TIGR00898 119 dlvcedawkvkltqsvvfvGvLlGslvlGqlsDrfGRkkvLllstlvtavsgvltafspn...ytvflvlrlLvGvgiagivvvalvLitEflpkkaRaivgilievffalGllllallAYlird.......WRwLlllvslPlvlflvlvwfvpESpRwlisq.........grieeAlkiLkrvAkingk.klpaevlslslekelsekkakkaslldllrtpklrkttlllmllwftt...afsYygL.vldleelgg.niYldllisglvelpaklitlllidrLgRrktmaaslllagvallll..llvpeelk..........llrtalavvgkag.issaFq.maylytaELYPTvvRnlgvgvcstmarvG.siisPflvyvlge.vs.......lflplvifgvlallaglls.llLPetkgvaLpe 505
                 +lv  ++ ++ l++s+  +G  +Gs+ +  l   +GR++ +l       + + l+a+spn   ++  lv r + G+gia ++ +a v i E+ p+  R   +   e f  +G++    +  +++         R + ++  l    ++v ++ +p SpRwl++q         + +++A+k+L+r ++  +  ++ aev +++  + l ++   ++s +dll  + ++   l l+ l   t   +++Yy   +++  ++g  + Y   +i g++ l+a l ++  +d++gRr  + + + ++ v+l++l   +  + +             ++++++v++++     F  +a l+ +E++P  +R  +++++ t+  +G  ++  f +++l++ ++       ++  + ++gvl++l  +++  + Petkg+ L+e
  MMETSP1137-20121227|9822_1  60 ELVGLSSIMKSLLTSSSLIGATVGSIAVFWLGEPLGRRREILTGATLYVLGSALSAISPNgiiLYSALVGRAIYGLGIAFSMHAAPVYISEMSPSDIRGQLVSAKEGFIVFGIMAGFSVSAACQAvmskdaaFRGIWAVPLLIGTGIFVGMFSMPPSPRWLLLQasrqlasanKYRDQAVKALQRFRRGASDaQIEAEVAEIE--QSLGTD--FETSWKDLLDARRALVAGLGLISLQQLTgqpSVLYYQQqIFEAAGFGSfSKYA-TVIIGAAKLIATLFAVRYVDNFGRRPLLFVGTTMMLVSLVVLgtGFFFSTREgdsvtlppgwPPVIVVTLVAYVCgYQVGFGpIAWLIISEVFPLKTRTRALSAAVTVN-FGfNLLMTFTLQLLQDaFDsispgkgQSYLFYLYGVLCVLSLVFVwAFVPETKGKSLEE 489
                 67777899****************************998777777777778899*****9554556799***********9999****************999988888888876554444444444454888888777666666789999**********987322222221234567777777777655546666666664..656665..589**********9999998888777663346887765155666665414565.677899*******************9887655555544444322444444456889999997334555555655416677853899********999999999887764.55244555555544431331111111556689*******9988773689******9987 PP

>> TIGR00895  2A0115: MFS transporter, aromatic acid:H+ symporter (AAHS) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.9   6.0   1.3e-15   7.7e-13      16     220 ..      31     240 ..      22     269 .. 0.82
   2 ?    2.5   0.5     0.021        12      67      98 ..     331     364 ..     311     373 .. 0.57
   3 !    6.4   0.6    0.0013      0.78     124     195 ..     404     482 ..     388     489 .. 0.79

  Alignments for each domain:
  == domain 1    score: 45.9 bits;  conditional E-value: 1.3e-15
   TIGR00895  16 irvlilsflivlvdGldllvlgfaapalskewgldkvelGfllsagLiGmvlGallfgplaDrigRkrvllvsillfsvftlasalatnvtqL...lvlRflaglGlGgllpnliaLvsEyapkrfratvv....glvavGyaiGaavggllaallipafgWrslflvggiiplllllllikvLpEsikflvekkpekvrkilnaiapslqa 220
                   ++ + +l+ ++ G+d+ +++ a +++ +  gl+++    l s++LiG+ +G++ + +l   +gR+r +l +  l  +++++sa++ n + L   lv R++ glG+   + ++ + +sE +p+ +r+++v    g+++ G   G +v+++  a++  + + r +++v  +i    + + ++ +p s ++l  + +++ +   n+  +++++
  MMETSP1137-20121227|9822_1  31 YLAFFFPALAGFLFGYDIGAASGAVNSVNELVGLSSIMKSLLTSSSLIGATVGSIAVFWLGEPLGRRREILTGATLYVLGSALSAISPNGIILysaLVGRAIYGLGIAFSMHAAPVYISEMSPSDIRGQLVsakeGFIVFGIMAGFSVSAACQAVMSKDAAFRGIWAVPLLIGTG-IFVGMFSMPPSPRWLLLQASRQ-LASANKYRDQAVK 240
                 55677778889999*****************************************************99999999999*********996655222789********************************33333678888999999999999999999988888887544443.566788999999**99995555.4445555555443 PP

  == domain 2    score: 2.5 bits;  conditional E-value: 0.021
   TIGR00895  67 lGallfgplaDrigRkrvllvs..illfsvftla 98 
                 +  l+     D +gR+++l v+  ++l+s++ l+
  MMETSP1137-20121227|9822_1 331 IATLFAVRYVDNFGRRPLLFVGttMMLVSLVVLG 364
                 3344444555666666665553113444444444 PP

  == domain 3    score: 6.4 bits;  conditional E-value: 0.0013
   TIGR00895 124 pnliaLvsEyapkrfratvvg...lvavGyaiGaavggll.aa...llipafgWrslflvggiiplllllllikvLpEs 195
                 p++  ++sE  p + r+ +++   +v  G+++ ++    l       + p  g   lf++ g++ +l l++++ ++pE 
  MMETSP1137-20121227|9822_1 404 PIAWLIISEVFPLKTRTRALSaavTVNFGFNLLMTFTLQLlQDafdSISPGKGQSYLFYLYGVLCVLSLVFVWAFVPET 482
                 78888999****9999988873335678999988776544132122467889999***********************6 PP

>> TIGR00887  2A0109: phosphate:H+ symporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   2.3   3.5e-06     0.002      56     174 ..      67     182 ..      57     195 .. 0.84
   2 !   29.8   0.5     1e-10   6.1e-08     342     501 ..     323     492 ..     223     493 .. 0.81

  Alignments for each domain:
  == domain 1    score: 14.9 bits;  conditional E-value: 3.5e-06
   TIGR00887  56 svsalvkasasvgtllgqllfglladllgrkrvygleliivivatvasalsakssalsvvatllfyrlllgvGiggdyplsaiitsefatkkrRGaliaavFamqgfGilagaivaliv 174
                  +++l++ s+ +g  +g++   +l++ lgr+r   +   + ++ + +sa+s+      ++   l+ r + g+Gi      + + +se++    RG l++a   +  fGi+ag  v  + 
  MMETSP1137-20121227|9822_1  67 IMKSLLTSSSLIGATVGSIAVFWLGEPLGRRREILTGATLYVLGSALSAISP---NGIILYSALVGRAIYGLGIAFSMHAAPVYISEMSPSDIRGQLVSAKEGFIVFGIMAGFSVSAAC 182
                 567899************************9977666777777776666655...45566677788*********9999999****************************998776655 PP

  == domain 2    score: 29.8 bits;  conditional E-value: 1e-10
   TIGR00887 342 iivlagtvPGYWvtvflvdklGRkaiqlmGFviltvlfvvlaiaynelsek...............gllalyvlaqfFanFGPnattFivPaevFPaRlRstahGisaaaG.kvG.aiiaqlalslladkgaakkgkptgiwvenvleifalvmllGilf.tlLiPetkgksleelsr 501
                 +i+ a+++    ++v  vd++GR+++ + G +++ v +vvl++ +   +++                 l+ yv + +   FGP a  +++ +evFP + R+ a  +saa+    G  ++ +++l+ll+d  ++     +g + + ++ ++ ++  l ++f    +Petkgkslee+++
  MMETSP1137-20121227|9822_1 323 VIIGAAKLIATLFAVRYVDNFGRRPLLFVGTTMMLVSLVVLGTGFFFSTREgdsvtlppgwppvivVTLVAYV-CGYQVGFGPIA--WLIISEVFPLKTRTRA--LSAAVTvNFGfNLLMTFTLQLLQDAFDSI---SPGKGQSYLFYLYGVLCVLSLVFvWAFVPETKGKSLEEIQQ 492
                 55556666667799****************************9987777667899999999765443344443.5567899*987..56669****8888655..77776524563688889999998865555...455777777778876666655541579***********985 PP

>> TIGR00883  2A0106: MFS transporter, metabolite:H+ symporter (MHS) family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0  11.9   1.1e-07   6.4e-05      49     362 ..      81     429 ..      64     442 .. 0.71

  Alignments for each domain:
  == domain 1    score: 20.0 bits;  conditional E-value: 1.1e-07
   TIGR00883  49 plGaivfGalgDrlGRkktLvvtlllMgigtvligllPsyatiGiwApilLlllrliQGlslGgEyggaalllaEsApegkrglygsfqqvgasvglllaalvvlllsallseealleWgWRiPFlvsvvlvligLyl....Rlk.leEtpvfekekekkkkear...........................kkriplaevltkkrkelllvlglviatsvlfYllttylasYlkktaklglsaesallvlllalillllviplsgllsdriGrrkvlilltvlaallavpl....lsallesssil.......lvlllllllalivamytgvmaa.llaelfptevRytgvslaynl 362
                  +G+i + +lg  lGR++ ++ + +l  +g++l ++ P+    Gi+     l+ r i Gl++   + +a ++++E++p++ rg + s+++     g++ +  v ++ +a++s++a ++  W +P l++  + +  + +    R   l+ + + + +++ ++++ +                             +++ + +l + r++l+++lgl+  ++++      y ++ + ++a++    + + ++++++++  l+ + ++  + d +Grr++l + t+++++  v l    ++   e +s++       +++++l++  + +++ +g++a  +++e+fp + R++++s a  +
  MMETSP1137-20121227|9822_1  81 TVGSIAVFWLGEPLGRRREILTGATLYVLGSALSAISPN----GIILYSA-LVGRAIYGLGIAFSMHAAPVYISEMSPSDIRGQLVSAKEGFIVFGIMAGFSVSAACQAVMSKDAAFRGIWAVPLLIGTGIFVGMFSMppspRWLlLQASRQLASANKYRDQAVKalqrfrrgasdaqieaevaeieqslgtDFETSWKDLLDA-RRALVAGLGLISLQQLTGQPSVLYYQQQIFEAAGF---GSFSKYATVIIGAAKLIATLFAVRYVDNFGRRPLLFVGTTMMLVSLVVLgtgfFFSTREGDSVTlppgwppVIVVTLVAYVCGYQVGFGPIAWlIISEVFPLKTRTRALSAAVTV 429
                 5899999999*************************9997....3332222.579************************************************************************998777766655333333214444444444444443333556667999999888877755544433333333333333.33666666666666666555555655555555552...3344455566666666667777789********9998888877665543222144444333443222222267788888888899999999852689*******99999887655 PP

>> TIGR00880  2_A_01_02: multidrug resistance protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.3      0.75   4.4e+02      88     111 ..      64      87 ..      25      93 .. 0.65
   2 !   21.0   7.0     1e-07   5.9e-05      18     139 ..      87     214 ..      70     216 .. 0.74
   3 !   13.7   6.3   1.9e-05     0.011       6     141 .]     324     482 ..     320     482 .. 0.74

  Alignments for each domain:
  == domain 1    score: -1.2 bits;  conditional E-value: 0.75
   TIGR00880  88 algllsagialgpilGpllGavla 111
                   +++ + ++ + ++G+ +G++ +
  MMETSP1137-20121227|9822_1  64 LSSIMKSLLTSSSLIGATVGSIAV 87 
                 456777777888888888888765 PP

  == domain 2    score: 21.0 bits;  conditional E-value: 1e-07
   TIGR00880  18 sglltdrvGrkpvllvglfifvlsqllfalssnitvli...iarilqGfgaaaalvagaaliadiikeeersvalgllsagialgpilGpllGavlaqalgwralf...lilallallafilllfllp 139
                 +  l + +Gr+  +l g  ++vl+++l+a+s n  +l+   + r++ G+g a+++ a+  +i+++++++ r++ ++    +i++g++ G  + a+  +++++ a f   +++ ll +  +++ +f +p
  MMETSP1137-20121227|9822_1  87 VFWLGEPLGRRREILTGATLYVLGSALSAISPNGIILYsalVGRAIYGLGIAFSMHAAPVYISEMSPSDIRGQLVSAKEGFIVFGIMAGFSVSAACQAVMSKDAAFrgiWAVPLLIGTGIFVGMFSMP 214
                 44455679***********************998888544489****************************999987777777777777777777666666666663334444444444555555555 PP

  == domain 3    score: 13.7 bits;  conditional E-value: 1.9e-05
   TIGR00880   6 gyAlgqlvvsplsglltdrvGrkpvllvglfifvlsqllfals..................snitvliiarilqGfgaaaal.vagaaliadiikeeersvalgllsagialgpilGpllGavla........qalgwralflilallallafilllfllpeT 141
                 +++++ l++ +++   +d +Gr+p+l+vg+ ++++s +++ ++                      v+++  +   +g+ + + +++  +i+++++ ++r++al+ ++++ ++g+ l   ++  l         +  g ++lf++ ++l++l+++ ++ ++peT
  MMETSP1137-20121227|9822_1 324 IIGAAKLIATLFAVRYVDNFGRRPLLFVGTTMMLVSLVVLGTGfffstregdsvtlppgwpP---VIVVTLVAYVCGYQVGFgPIAWLIISEVFPLKTRTRALSAAVTV-NFGFNLLMTFTLQLLqdafdsisPGKGQSYLFYLYGVLCVLSLVFVWAFVPET 482
                 78999**********************************99999999****99999885433...3333333333444443303334567899**********998875.34433333333332223333355667999**********************98 PP

>> TIGR00710  efflux_Bcr_CflA: drug resistance transporter, Bcr/CflA subfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   1.4   1.6e-05    0.0095      39      94 ..      66     121 ..      52     143 .. 0.79
   2 !    8.9   0.2   0.00033      0.19      55      86 ..     331     362 ..     299     367 .. 0.83
   3 ?    3.8   0.0     0.012       6.9     287     350 ..     406     470 ..     394     493 .. 0.71

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 1.6e-05
   TIGR00710  39 asavqltltlyllglavgqLllGplsDsyGRkpvlLlgllvfalsslvlalsenie 94 
                 + + +l  ++ l+g +vg + +  l+  +GR+  +L g ++++l+s  +a+s+n  
  MMETSP1137-20121227|9822_1  66 SIMKSLLTSSSLIGATVGSIAVFWLGEPLGRRREILTGATLYVLGSALSAISPNGI 121
                 4445555678899************************************9999854 PP

  == domain 2    score: 8.9 bits;  conditional E-value: 0.00033
   TIGR00710  55 vgqLllGplsDsyGRkpvlLlgllvfalsslv 86 
                 ++ L+  +  D +GR+p l +g+++  +s +v
  MMETSP1137-20121227|9822_1 331 IATLFAVRYVDNFGRRPLLFVGTTMMLVSLVV 362
                 5778888999**************99988665 PP

  == domain 3    score: 3.8 bits;  conditional E-value: 0.012
   TIGR00710 287 vllvltallglvslalviavailvgigvslvlsialalaLeefphva.Gtasallgtlrlvlgai 350
                 ++l+++++  l+  + +++ a+ v  g  l+++ +l+l  + f+ ++ G+ ++ l+ l+ vl+ +
  MMETSP1137-20121227|9822_1 406 AWLIISEVFPLKTRTRALSAAVTVNFGFNLLMTFTLQLLQDAFDSISpGKGQSYLFYLYGVLCVL 470
                 57777777777777777777777777777777777777777777764477777777777777654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (495 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       208  (0.050707); expected 82.0 (0.02)
Passed bias filter:                      120  (0.029254); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.52u 0.16s 00:00:00.68 Elapsed: 00:00:00.51
# Mc/sec: 1281.07
//
Query:       MMETSP1137-20121227|9823_1  [L=79]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (79 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       109  (0.0265724); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.13s 00:00:00.26 Elapsed: 00:00:00.31
# Mc/sec: 336.36
//
Query:       MMETSP1137-20121227|9824_1  [L=150]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (150 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        94  (0.0229157); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.13s 00:00:00.31 Elapsed: 00:00:00.25
# Mc/sec: 791.93
//
Query:       MMETSP1137-20121227|9827_1  [L=636]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   7.8e-142  471.4   0.0   1.1e-141  471.0   0.0    1.0  1  TIGR00463 gltX_arch: glutamine--tRNA ligase
    3.2e-95  317.8   0.0      4e-95  317.5   0.0    1.0  1  TIGR00440 glnS: glutamine--tRNA ligase
    2.8e-20   70.5   0.0    3.9e-20   70.0   0.0    1.2  1  TIGR00464 gltX_bact: glutamate--tRNA ligase
    5.4e-12   43.5   0.0    1.8e-11   41.8   0.0    1.8  1  TIGR03838 queuosine_YadB: glutamyl-queuosine tRNA(Asp) synthetase


Domain annotation for each model (and alignments):
>> TIGR00463  gltX_arch: glutamine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  471.0   0.0  1.1e-144  1.1e-141      82     547 ..      45     543 ..      39     547 .. 0.95

  Alignments for each domain:
  == domain 1    score: 471.0 bits;  conditional E-value: 1.1e-144
   TIGR00463  82 klieLedakkgevvlrfaPnPsGplhiGharaailnqefakkYeGklilrldDtdPrrekeeaydsileDldlLGvkvDevvyqsdrielyYdYarkliedGkaYvcdcsteefrelrnkGvackrrdrsveenLevweemlegeeeeekvvvrvktDlkhknpairDfvifriektehprtGdkykvYPlldfsvaidDhllGvthvlrgkdyidnerkqeYiykylglelpevkhygrlkiedvraLstsskkkgike.geysGWDDprlptlralrrrGikpeairelllslGvkeadvklswkklyalnkkiidkearryffiv..nPvkleieglp.ekkleekPlhpdkpevGerklilekeiyvdkDdlevl.edeevrLmdlvnvilekked.dgsky....aseelegarkkgkkiihWlpe.kdavkvkvidedaeiakglvekdaskv........................evddvvqferfgfvrlds 547
                 ++i L+da++g+vv+rf+P+PsG lhiGh +aa+ln +fa +Y+Gkl+lr+dDt+P++ekee  + i  Dl  + + + +v  +sd ++++ + a ++++dG a+v+ +++ee + lr+k ++++ rd+sveenL++w+em   +ee++k ++r+k+D    n a+rD+ i+r++ t+h+ t dkykvYP++d + +i+D  +Gvth+lr ++y d  r ++Y + +  l+l++v+ +g+ +i++vr+L++++k++++++ g+  GW+Dpr+pt+ ++ rrG+++e++++++l +G +++   + w+k++a nk +id +a+ry++++  + vk+++ g+p e+  e    hp+   +G++   +  +++++ +d+e++  +eev+Lm ++n i+++++  +  k+    a+++l+g+ k +kk+++Wl++  d v+ +++d+d   +k+ +e +  +                         + +++vq+er g++  ds
  MMETSP1137-20121227|9827_1  45 MEIPLPDAEMGKVVTRFPPEPSGHLHIGHIKAAMLNAHFAEQYQGKLLLRFDDTNPSKEKEEYEEAIVRDLASMQIVPVQVSHTSDWFDQLIEMATQMVKDGLAFVDPSPQEEQQALRMKKKPSPYRDQSVEENLRLWKEMQLASEEGLKCCMRAKIDPGSDNGAMRDPTIYRCNLTPHHSTKDKYKVYPTYDLCCPIVDSWEGVTHALRDRQYSD--RDAQYAWFLEKLKLRKVHLWGFSRINFVRTLLSKRKLQWLVDqGRVDGWNDPRFPTVAGILRRGMTVEGLKKFILGMGASKNTNLMGWDKIWATNKAVIDATAHRYTALLsnGLVKVTLRGAPaEPYAESIFAHPKDESLGKKIRFFAPTVWLQAEDAETIaPGEEVTLMSWGNAIMDEVKKdASGKVvgidATLNLQGSVKSTKKKLTWLADtPDLVNIELVDFDFLLTKDKIEPEDEERietilnndtkfvdaalgeaamrqlQQGQIVQIERRGYYICDS 543
                 56789*****************************************************************************************************************************************************************************************************************99..***************************************98637899************************************************************98722469********9*******************999***************99**************9966526666623334689*****************89********************76655559********************9999***********98876 PP

>> TIGR00440  glnS: glutamine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  317.5   0.0   3.9e-98     4e-95       1     510 [.      57     551 ..      57     558 .. 0.92

  Alignments for each domain:
  == domain 1    score: 317.5 bits;  conditional E-value: 3.9e-98
   TIGR00440   1 vrtrfppepnGylhiGhaksillnfGlakeykGtcnlrfddtnpvkedveyvesikrdvewlGfkwegkvryssdyfdelyalavelikkGlayvdeltaeeireyrGiledpGkaskyrdrsieenlalfekmrdGkfkeGkailrakidlaspfivmrdlvlyrikfaehhrtGdkwriypmydfthclsdalenithslctlefqdnrrlydwvldnisievrpaqyefsrlnlegtvlskrklaklvddkfveGwddprlptlsalrrrGvtpasirefikrlGvtkqdnvievaalesairedleenapramavldp..vkvvienledeaelvtipnrpnkpelGerqvpftkelyidradfreeadkeykrlvlgkevrlrnayvikaervekdaeGkiitifvtydaevlskepadgrkvkgviqwvsissk.ypaeirlydrlfkve..npgaeddflsvinpeslvikegvveqsladavaekafqfereGyftldskestaekv 510
                 v trfppep G+lhiGh k+ +ln  +a++y+G+  lrfddtnp ke+ ey e+i rd+  + + +  +v ++sd+fd+l ++a +++k+Gla+vd    ee +  r  +++    s+yrd+s+eenl+l+++m+    +  k ++rakid  s    mrd+ +yr   ++hh t dk+++yp+yd+   ++d+ e++th+l   ++ d    y w l+++++  + +   fsr+n+  t+lskrkl+ lvd+  v+Gw+dpr+pt+ ++ rrG+t   +++fi  +G +k++n +   ++ ++ +  ++ +a r  a+l    vkv +     e    +i  +p+   lG++   f+  ++++  d           + +g+ev l       +++v+kda+Gk++ i +t + +         + +k  + w++ + +  ++e+  +d l++ +  +p  e+ ++  +n ++  +  ++ e ++++ ++++  q+er Gy++ ds   +a  +
  MMETSP1137-20121227|9827_1  57 VVTRFPPEPSGHLHIGHIKAAMLNAHFAEQYQGKLLLRFDDTNPSKEKEEYEEAIVRDLASMQIVP-VQVSHTSDWFDQLIEMATQMVKDGLAFVDPSPQEEQQALRM-KKK---PSPYRDQSVEENLRLWKEMQLASEEGLKCCMRAKIDPGSDNGAMRDPTIYRCNLTPHHSTKDKYKVYPTYDLCCPIVDSWEGVTHALRDRQYSDRDAQYAWFLEKLKLR-KVHLWGFSRINFVRTLLSKRKLQWLVDQGRVDGWNDPRFPTVAGILRRGMTVEGLKKFILGMGASKNTNLMGWDKIWATNKAVIDATAHRYTALLSNglVKVTLRGAPAEPYAESIFAHPKDESLGKKIRFFAPTVWLQAEDA--------ETIAPGEEVTLMSWGNAIMDEVKKDASGKVVGIDATLNLQGS------VKSTKKKLTWLADTPDlVNIELVDFDFLLTKDkiEPEDEERIETILNNDTKFVDAALGEAAMRQLQQGQIVQIERRGYYICDSPYVRAADP 551
                 67***************************************************************9.9****************************988888777775.444...59*******************999999*********************************************************************************9.99*****************************************************************************************999976448888888888887999***********************97664........3589*****888777777999**********99887765544......45556668898876551689**99****998733588999******************************************977776655 PP

>> TIGR00464  gltX_bact: glutamate--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.0   0.0   3.8e-23   3.9e-20       1     255 [.      56     305 ..      56     311 .. 0.81

  Alignments for each domain:
  == domain 1    score: 70.0 bits;  conditional E-value: 3.8e-23
   TIGR00464   1 kvrvRfAPSPTGylHiGglRtAlfnyllAkntngeFllRiEDTDkeRnieeaeeeileilkwlgiewdegpylQskrldiykklikeLleegkAYrCycskEeLeklreeqkakketprYdrkcrnleeeeiekklakgekpvvRlkipeea.evsfnDlvrgeiklenselddlvilksdglptYnlavvvDDllmkithviRgedhisntpkqillykAlgakipkfaHlplildeegkKLSKRdgatsieqfk 255
                 kv +Rf P P G+lHiG +++A+ n  +A + +g+ llR +DT  ++++ee+ee+i+  l  + i    ++   s+ +d   +++++++++g+A+     +Ee ++lr ++k +    +  ++   l +e  + + ++g k+ +R ki+  + + +  D    + +l +++ +     k    ptY+l++ + D   ++th +R  ++    ++    ++ l+ +  +    + i+   +  LSKR+ +  ++q +
  MMETSP1137-20121227|9827_1  56 KVVTRFPPEPSGHLHIGHIKAAMLNAHFAEQYQGKLLLRFDDTNPSKEKEEYEEAIVRDLASMQIVPV-QVSHTSDWFDQLIEMATQMVKDGLAFVDPSPQEEQQALRMKKKPSPYRDQSVEENLRLWKEM-QLASEEGLKCCMRAKIDPGSdNGAMRDPTIYRCNLTPHHSTK---DKYKVYPTYDLCCPIVDSWEGVTHALRDRQYSDRDAQYAWFLEKLKLRKVHLWGFSRIN-FVRTLLSKRKLQWLVDQGR 305
                 699************************************************************99876.67778888888888999**********99999999999988776655555555555555444.7888999*********86551567888888888888877663...488999*********9*99********99998888888777777777755555555543.3445677777666666655 PP

>> TIGR03838  queuosine_YadB: glutamyl-queuosine tRNA(Asp) synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.8   0.0   1.8e-14   1.8e-11       2      97 ..      58     152 ..      57     280 .. 0.70

  Alignments for each domain:
  == domain 1    score: 41.8 bits;  conditional E-value: 1.8e-14
   TIGR03838   2 vGRfAPsPtGpLHlGslvaalasyldaraaggkwlvRieDlDtpRevpgaaeeilatLealglewDeevvyQserkelYqaalerlkaaglaYpCa 97 
                 v Rf P P+G+LH+G + aa++    a + +gk l+R++D  + +e+++++e+i+++L+ +++ +  +v   s+  ++  ++ +++ ++gla+   
  MMETSP1137-20121227|9827_1  58 VTRFPPEPSGHLHIGHIKAAMLNAHFAEQYQGKLLLRFDDTNPSKEKEEYEEAIVRDLASMQIVPV-QVSHTSDWFDQLIEMATQMVKDGLAFVDP 152
                 78**********************************************************998763.34444555555555555666666666554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (636 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       144  (0.0351048); expected 82.0 (0.02)
Passed bias filter:                      135  (0.0329108); expected 82.0 (0.02)
Passed Vit filter:                        18  (0.0043881); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.54u 0.16s 00:00:00.70 Elapsed: 00:00:00.65
# Mc/sec: 1291.46
//
Query:       MMETSP1137-20121227|9828_1  [L=356]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (356 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        60  (0.014627); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.16s 00:00:00.41 Elapsed: 00:00:00.52
# Mc/sec: 903.62
//
Query:       MMETSP1137-20121227|9829_1  [L=218]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0052   14.2   0.8      0.073   10.5   0.0    2.3  2  TIGR02382 wecD_rffC: TDP-D-fucosamine acetyltransferase
     0.0057   12.6   0.0       0.83    5.4   0.0    2.1  2  TIGR00870 trp: transient-receptor-potential calcium channel protein


Domain annotation for each model (and alignments):
>> TIGR02382  wecD_rffC: TDP-D-fucosamine acetyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.1     0.012        25      38      88 ..      49     102 ..      32     109 .. 0.71
   2 !   10.5   0.0   3.6e-05     0.073     153     188 ..     123     158 ..      96     161 .. 0.85

  Alignments for each domain:
  == domain 1    score: 2.2 bits;  conditional E-value: 0.012
   TIGR02382  38 evvtse.pslrvateadipalrdvas..aafalsrfrapwydaedsgrfyaqwv 88 
                 + +ts  +++ v++  d+p l +     +  a +    p    ++s+ fya  v
  MMETSP1137-20121227|9829_1  49 TLATSAfSGAAVSNAFDVPPLDQFDDprQRKAFAANANPGLTKQASSAFYAVTV 102
                 444443157788888899988887532233444455789999999999999876 PP

  == domain 2    score: 10.5 bits;  conditional E-value: 3.6e-05
   TIGR02382 153 rrrGltrlrvatqvgnvaalrlyirsGasiestayw 188
                    G+t+l  a+qvgn  a+++ + +G +++  + w
  MMETSP1137-20121227|9829_1 123 DSAGKTTLHRAAQVGNEVAVKMLLDAGVKVDPITRW 158
                 5689*************************9988877 PP

>> TIGR00870  trp: transient-receptor-potential calcium channel protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.4   0.0    0.0004      0.83     127     158 ..     122     153 ..     115     159 .. 0.89
   2 !    5.1   0.0   0.00049         1     132     158 ..     160     186 ..     156     199 .. 0.89

  Alignments for each domain:
  == domain 1    score: 5.4 bits;  conditional E-value: 0.0004
   TIGR00870 127 eftkgitalilAihkqnyeivklLlekgasve 158
                 + ++g+t l+ A++  n   vk+Ll+ g++v 
  MMETSP1137-20121227|9829_1 122 TDSAGKTTLHRAAQVGNEVAVKMLLDAGVKVD 153
                 5678*************************996 PP

  == domain 2    score: 5.1 bits;  conditional E-value: 0.00049
   TIGR00870 132 italilAihkqnyeivklLlekgasve 158
                  t+l+ A+ +  +  vk L++ gas++
  MMETSP1137-20121227|9829_1 160 ETPLHFAVRNGRLGAVKQLVAAGASLS 186
                 6***********************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (218 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       104  (0.0253535); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.17u 0.21s 00:00:00.38 Elapsed: 00:00:00.43
# Mc/sec: 669.15
//
Query:       MMETSP1137-20121227|9830_1  [L=643]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.8e-39  133.4   0.0    1.8e-37  126.8   0.0    2.1  1  TIGR01982 UbiB: 2-polyprenylphenol 6-hydroxylase


Domain annotation for each model (and alignments):
>> TIGR01982  UbiB: 2-polyprenylphenol 6-hydroxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  126.8   0.0   4.4e-41   1.8e-37      39     296 ..     210     448 ..     181     495 .. 0.83

  Alignments for each domain:
  == domain 1    score: 126.8 bits;  conditional E-value: 4.4e-41
   TIGR01982  39 skeearkeslgerlrlaleelGPifiKlGQvlstRaDllpeeiaeeLslLqdkvppfdlkaarkvieaelgkpveelFaefeekPlAaASiaQvhkAvl.vegkeVavKvlRPgiekkieadikllellaklvekllpeakrlrptevvkefektlkeEldlrlEaanaselkenfkndkklivPevyweltservltlewidgipvsdleklkeaGldlkalaenlvesflkqvlrdgfFHaDlHpGNilvakdgkii 296
                 +++e + + +++ l+ +l   G i++KlGQ ++    ++pe +++ Ls L     + + +++ kvi ++lg   eelF ++e +PlA+AS+aQvh+A+  ++g   avKv+ P++++  +ad++ ++ + kl+  l+p+              ++l eE+     +a+ +         + ++vP v+ +lt+ rvlt+ + +g +v+d+ +l+++ + +  +++ l e+f+ q++  +f H D+HpGN+l++++++ +
  MMETSP1137-20121227|9830_1 210 TWHELHTRGAQKMLAMCLA-NGGIYVKLGQHIAQLDYIVPEPYTKALSALFRTNMTSPWEDVVKVIREDLGAEPEELFGSIERTPLASASLAQVHRATArHTGAPLAVKVQHPNLREICDADMAAVAVAVKLAGWLFPDDFT----------LQWLLEEMKVXXAGAALA---------DAVVVPGVVHSLTTPRVLTMTFEEGCSVTDIDALRKMNISPSLVTKLLCETFCSQIFLGNFVHCDPHPGNVLIRQHPNCA 448
                 3333333345556667776.588*************************************************88888********************973788************************999999999977553..........479999**9998887653.........689***********************************************************************996554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (643 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       141  (0.0343735); expected 82.0 (0.02)
Passed bias filter:                       96  (0.0234032); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.26s 00:00:00.61 Elapsed: 00:00:00.85
# Mc/sec: 998.46
//
Query:       MMETSP1137-20121227|9831_1  [L=103]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.046   11.1   1.0      0.058   10.8   0.7    1.1  1  TIGR01712 phage_N6A_met: phage N-6-adenine-methyltransferase


Domain annotation for each model (and alignments):
>> TIGR01712  phage_N6A_met: phage N-6-adenine-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.7   1.4e-05     0.058      31      65 ..      49      85 ..      39      88 .. 0.81

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 1.4e-05
   TIGR01712 31 vLDaaaseenavCakyyteednaLkreWserk..avf 65
                + D+aa  + a  a+++++e  +L++ W  +k  a++
  MMETSP1137-20121227|9831_1 49 QRDTAAISKLAWXAAWFAAESRCLNSGWRAEKhrAAW 85
                56999999999*****************866634777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (103 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        49  (0.0119454); expected 82.0 (0.02)
Passed bias filter:                       37  (0.00901999); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.12u 0.18s 00:00:00.30 Elapsed: 00:00:00.52
# Mc/sec: 261.44
//
Query:       MMETSP1137-20121227|9833_1  [L=190]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (190 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        66  (0.0160897); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.14s 00:00:00.32 Elapsed: 00:00:00.33
# Mc/sec: 759.94
//
Query:       MMETSP1137-20121227|9834_1  [L=338]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (338 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       208  (0.050707); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.16s 00:00:00.44 Elapsed: 00:00:00.26
# Mc/sec: 1715.86
//
Query:       MMETSP1137-20121227|9835_1  [L=519]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (519 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       177  (0.0431497); expected 82.0 (0.02)
Passed bias filter:                      126  (0.0307167); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.19s 00:00:00.57 Elapsed: 00:00:00.56
# Mc/sec: 1223.26
//
Query:       MMETSP1137-20121227|9836_1  [L=461]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (461 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        97  (0.023647); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.17s 00:00:00.48 Elapsed: 00:00:00.51
# Mc/sec: 1193.08
//
Query:       MMETSP1137-20121227|9837_1  [L=476]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.5e-05   21.3   0.0    0.00011   20.3   0.0    1.4  1  TIGR02469 CbiT: precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit
    6.6e-05   20.1   0.1     0.0016   15.6   0.0    2.6  3  TIGR01934 MenG_MenH_UbiE: ubiquinone/menaquinone biosynthesis methyltransferase
    0.00051   17.7   0.0     0.0017   16.0   0.0    1.8  2  TIGR02072 BioC: biotin biosynthesis protein BioC
     0.0014   15.0   0.0     0.0027   14.1   0.0    1.4  1  TIGR04074 bacter_Hen1: 3' terminal RNA ribose 2'-O-methyltransferase Hen1
     0.0022   15.2   0.0     0.0034   14.5   0.0    1.3  1  TIGR01983 UbiG: 3-demethylubiquinone-9 3-O-methyltransferase
     0.0024   15.2   0.0     0.0055   14.0   0.0    1.5  2  TIGR00406 prmA: ribosomal protein L11 methyltransferase
     0.0025   15.2   0.0      0.021   12.1   0.0    2.1  2  TIGR03534 RF_mod_PrmC: protein-(glutamine-N5) methyltransferase, release factor-specific
  ------ inclusion threshold ------
      0.011   13.0   0.0      0.018   12.3   0.0    1.3  1  TIGR02021 BchM-ChlM: magnesium protoporphyrin O-methyltransferase
      0.036   11.0   0.0      0.052   10.5   0.0    1.3  1  TIGR00452 TIGR00452: putative methyltransferase


Domain annotation for each model (and alignments):
>> TIGR02469  CbiT: precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   0.0   2.4e-07   0.00011      16      68 ..     172     223 ..     165     249 .. 0.83

  Alignments for each domain:
  == domain 1    score: 20.3 bits;  conditional E-value: 2.4e-07
   TIGR02469  16 rlkkgdvllDiGaGtGsvtieaarlvpkgrvyaierneealelieeNlrrfgv 68 
                 rl +++ ++D+G+Gt ++  ++a++    rv++i+  + ale ++e lrr ++
  MMETSP1137-20121227|9837_1 172 RLPADASVIDVGCGTSTLVFDLAEAYTG-RVVGIDNAPSALECLREELRRRVA 223
                 6777889****************99876.******************999743 PP

>> TIGR01934  MenG_MenH_UbiE: ubiquinone/menaquinone biosynthesis methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   3.5e-06    0.0016      39      88 ..     175     225 ..     161     249 .. 0.82
   2 ?   -2.7   0.0       1.4   6.2e+02     128     149 ..     285     306 ..     280     315 .. 0.79
   3 ?    1.3   0.0     0.081        37      33      62 ..     334     363 ..     325     379 .. 0.76

  Alignments for each domain:
  == domain 1    score: 15.6 bits;  conditional E-value: 3.5e-06
   TIGR01934  39 keekvlDvatGtGdlaielakkaeakvtgvDlseemLevakkkakek.eea 88 
                 +++ v+Dv +Gt  l++ la++++ +v+g+D +++ Le  ++ ++ + + a
  MMETSP1137-20121227|9837_1 175 ADASVIDVGCGTSTLVFDLAEAYTGRVVGIDNAPSALECLREELRRRvAAA 225
                 6789*********************************99998887664444 PP

  == domain 2    score: -2.7 bits;  conditional E-value: 1.4
   TIGR01934 128 elaRVlkpggrlvilefskpkn 149
                 ++a Vlkp+++++++   +p++
  MMETSP1137-20121227|9837_1 285 QIAQVLKPDATVLLVSWRQPEQ 306
                 5788*******99999999886 PP

  == domain 3    score: 1.3 bits;  conditional E-value: 0.081
   TIGR01934  33 kkieeekeekvlDvatGtGdlaielakkae 62 
                 +++  + +++v  + +Gt+d+  +  k+ +
  MMETSP1137-20121227|9837_1 334 TRASRKPQRQVAELSAGTADVGRQAVKRGP 363
                 4455668999***********999988776 PP

>> TIGR02072  BioC: biotin biosynthesis protein BioC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0   3.7e-06    0.0017      33      80 ..     174     229 ..     163     266 .. 0.74
   2 ?   -1.9   0.0       1.1   5.2e+02      34      60 ..     340     366 ..     331     379 .. 0.76

  Alignments for each domain:
  == domain 1    score: 16.0 bits;  conditional E-value: 3.7e-06
   TIGR02072  33 fepakvLdiGcGtGiltrallkrfpqaelialDiseemleqakkkls.........n 80 
                   +a+v+d+GcGt  l   l++ ++   ++ +D++++ le+++++l+         +
  MMETSP1137-20121227|9837_1 174 PADASVIDVGCGTSTLVFDLAEAYTGR-VVGIDNAPSALECLREELRrrvaaasvnK 229
                 34589*******************998.***************99986555554440 PP

  == domain 2    score: -1.9 bits;  conditional E-value: 1.1
   TIGR02072  34 epakvLdiGcGtGiltrallkrfpqae 60 
                  +++v ++ +Gt+ + r+  kr p+  
  MMETSP1137-20121227|9837_1 340 PQRQVAELSAGTADVGRQAVKRGPHRA 366
                 457999*******99999999998875 PP

>> TIGR04074  bacter_Hen1: 3' terminal RNA ribose 2'-O-methyltransferase Hen1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.0   5.9e-06    0.0027     284     337 ..     177     229 ..     169     241 .. 0.84

  Alignments for each domain:
  == domain 1    score: 14.1 bits;  conditional E-value: 5.9e-06
   TIGR04074 284 rsvlDlGcGegkLlkaLlaekqfekivgvdvsareLekakrrlkldrlsekqre 337
                  sv+D+GcG + L+  L ae+   ++vg+d + ++Le  ++ l+ + ++ + ++
  MMETSP1137-20121227|9837_1 177 ASVIDVGCGTSTLVFDL-AEAYTGRVVGIDNAPSALECLREELRRRVAAASVNK 229
                 58************997.578899**************9999987666555444 PP

>> TIGR01983  UbiG: 3-demethylubiquinone-9 3-O-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.0   7.5e-06    0.0034      50      90 ..     176     217 ..     135     266 .. 0.86

  Alignments for each domain:
  == domain 1    score: 14.5 bits;  conditional E-value: 7.5e-06
   TIGR01983  50 glkvlDvGcGgGllseslarlgae.vtgiDlseelievAklh 90 
                 + +v+DvGcG   l   la+  +  v+giD + +++e  ++ 
  MMETSP1137-20121227|9837_1 176 DASVIDVGCGTSTLVFDLAEAYTGrVVGIDNAPSALECLREE 217
                 689****************987766*******9999877655 PP

>> TIGR00406  prmA: ribosomal protein L11 methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.0   1.2e-05    0.0055     160     204 ..     176     220 ..     169     241 .. 0.87
   2 ?   -3.8   0.0       3.1   1.4e+03     259     280 ..     391     412 ..     386     416 .. 0.82

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 1.2e-05
   TIGR00406 160 dkkviDvGcGSGiLsiaalklgaakvvavDiDplavesarkNlel 204
                 d +viDvGcG   L   ++     +vv++D+ p a+e  r+ l++
  MMETSP1137-20121227|9837_1 176 DASVIDVGCGTSTLVFDLAEAYTGRVVGIDNAPSALECLREELRR 220
                 679**********************************99987765 PP

  == domain 2    score: -3.8 bits;  conditional E-value: 3.1
   TIGR00406 259 Gileeqaqsvleayeqaftvve 280
                 G+ +  ++sv++  +q++++++
  MMETSP1137-20121227|9837_1 391 GVAKGASNSVADXVAQKYALDD 412
                 6677789999999999999876 PP

>> TIGR03534  RF_mod_PrmC: protein-(glutamine-N5) methyltransferase, release factor-specific
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.1   0.0   4.5e-05     0.021      75     138 ..     164     224 ..     133     245 .. 0.83
   2 ?    0.4   0.0      0.17        76     188     225 ..     269     305 ..     266     332 .. 0.82

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 4.5e-05
   TIGR03534  75 lLveaaleelkkkeklkvlDlgtGsGaIalalakelpdakviavDiseeAlkvarkNakrlglk 138
                 +L    l +l+ ++  +v+D+g+G+ ++   la+   + +v+++D  ++Al+  r+ ++r  ++
  MMETSP1137-20121227|9837_1 164 QLAPLLLGRLPADA--SVIDVGCGTSTLVFDLAEA-YTGRVVGIDNAPSALECLREELRRRVAA 224
                 55566677777777..9***************988.5679*************99988876555 PP

  == domain 2    score: 0.4 bits;  conditional E-value: 0.17
   TIGR03534 188 LvggedGldlyrriaeeaakllkeggllllEigekqae 225
                 L+ ++dG  l+ + ++++a++lk+++++ll ++++q e
  MMETSP1137-20121227|9837_1 269 LCDERDGARLVAEXYAQIAQVLKPDATVLL-VSWRQPE 305
                 78899*******************999887.5565555 PP

>> TIGR02021  BchM-ChlM: magnesium protoporphyrin O-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0     4e-05     0.018      44      99 ..     169     221 ..     155     239 .. 0.79

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 4e-05
   TIGR02021  44 llewlpkdslkGkkvlDAGCGtGllsielAkr.GaivkavDiseklvelarkraeke 99 
                 ll +lp d      v+D GCGt  l  +lA+    +v+++D +++ +e  r++++ +
  MMETSP1137-20121227|9837_1 169 LLGRLPAD----ASVIDVGCGTSTLVFDLAEAyTGRVVGIDNAPSALECLREELRRR 221
                 55666655....89****************86356999***9999888888777665 PP

>> TIGR00452  TIGR00452: putative methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   0.00011     0.052     121     163 ..     175     218 ..     153     271 .. 0.73

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 0.00011
   TIGR00452 121 kgrtildvGcgsGyylfrmvgeGaklvvGidpt.elvlkqfeav 163
                  +  ++dvGcg+   +f + ++ +  vvGid +   + +  e +
  MMETSP1137-20121227|9837_1 175 ADASVIDVGCGTSTLVFDLAEAYTGRVVGIDNApSALECLREEL 218
                 5789***************************6512334444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (476 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       125  (0.0304729); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                        18  (0.0043881); expected 4.1 (0.001)
Passed Fwd filter:                         9  (0.00219405); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.34u 0.17s 00:00:00.51 Elapsed: 00:00:00.52
# Mc/sec: 1208.21
//
Query:       MMETSP1137-20121227|9838_1  [L=229]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (229 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        90  (0.0219405); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.15s 00:00:00.36 Elapsed: 00:00:00.35
# Mc/sec: 863.59
//
Query:       MMETSP1137-20121227|9839_1  [L=458]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.3e-32  111.4   0.0    1.7e-32  111.0   0.0    1.1  1  TIGR02349 DnaJ_bact: chaperone protein DnaJ
    1.3e-21   74.6   2.3    1.7e-21   74.2   1.6    1.0  1  TIGR03835 termin_org_DnaJ: terminal organelle assembly protein TopJ
    2.7e-11   41.0   0.0    3.6e-05   20.8   0.0    2.2  2  TIGR00225 prc: C-terminal processing peptidase
    5.1e-11   40.0   0.8      7e-08   29.6   0.0    2.3  2  TIGR02037 degP_htrA_DO: peptidase Do
    2.8e-05   21.0   0.0    0.00042   17.1   0.0    1.9  1  TIGR00054 TIGR00054: RIP metalloprotease RseP
    0.00022   18.3   0.0     0.0021   15.1   0.0    2.2  3  TIGR02038 protease_degS: periplasmic serine peptidase DegS
     0.0005   18.1   0.2    0.00093   17.2   0.1    1.4  1  TIGR00714 hscB: Fe-S protein assembly co-chaperone HscB
     0.0077   13.1   0.0       0.24    8.2   0.0    2.1  2  TIGR02860 spore_IV_B: stage IV sporulation protein B


Domain annotation for each model (and alignments):
>> TIGR02349  DnaJ_bact: chaperone protein DnaJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  111.0   0.0   3.4e-35   1.7e-32       1     106 [.      46     150 ..      46     168 .. 0.83

  Alignments for each domain:
  == domain 1    score: 111.0 bits;  conditional E-value: 3.4e-35
   TIGR02349   1 dYYeiLgvskdAseeeikkAYrklakkyHPDrnkg.ekeaeekfkeineAyevLsdeekraqYDqfghagleggaggggagfegfeasefgd..igdifeeffgggggs 106
                 dYY+iLgv+++A+++ ikkA+rkl+ k+HPD+n++ ++eae+kf++i++Ay vLsd+ekr+ YDqfg++gl+gg+ ggga   g     +g+    +if++ff ++gg 
  MMETSP1137-20121227|9839_1  46 DYYKILGVPRSADAKAIKKAFRKLSVKWHPDKNPDnKEEAEKKFQRIANAYTVLSDDEKRKVYDQFGEDGLSGGGRGGGA-PGGGP---MGGidPREIFKQFFASEGGG 150
                 9*********************************95678*********************************97655433.33323...33322569999999977653 PP

>> TIGR03835  termin_org_DnaJ: terminal organelle assembly protein TopJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.2   1.6   3.2e-24   1.7e-21       3      72 ..      46     117 ..      44     121 .. 0.95

  Alignments for each domain:
  == domain 1    score: 74.2 bits;  conditional E-value: 3.2e-24
   TIGR03835   3 DyyevLgidrDadeqeikkafrkLakkyhPDrnka..adaakifaeineandvLsnPkkraryDkyGhDGvD 72 
                 Dyy +Lg+ r ad + ikkafrkL+ k+hPD+n +   +a+k f+ i +a+ vLs+ +kr+ yD++G DG+ 
  MMETSP1137-20121227|9839_1  46 DYYKILGVPRSADAKAIKKAFRKLSVKWHPDKNPDnkEEAEKKFQRIANAYTVLSDDEKRKVYDQFGEDGLS 117
                 9********************************887789*******************************96 PP

>> TIGR00225  prc: C-terminal processing peptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   0.0     7e-08   3.6e-05      53     121 ..     213     289 ..     205     292 .. 0.70
   2 !   20.0   0.0   1.2e-07   6.1e-05      31     107 ..     271     346 ..     262     367 .. 0.83

  Alignments for each domain:
  == domain 1    score: 20.8 bits;  conditional E-value: 7e-08
   TIGR00225  53 iGiqvqmeddeivivsplegsPAekagikpgDkIikvdgksvagmeldda...........velirGkkgtkvkleiera 121
                 +G ++ +   +  ++ + +g+PAe+ag+++gD + +vdg+  +g ++ +a           v+ +rG++g  +++++ ++
  MMETSP1137-20121227|9839_1 213 LGFKLDS---QNAVTGLTRGGPAERAGLRVGDVVWEVDGEALQGRRVAQAlgarrrahdfrVAYMRGEEGQALEVTLAKP 289
                 5555444...44678899**********************9999999887333333333335666666666666666555 PP

  == domain 2    score: 20.0 bits;  conditional E-value: 1.2e-07
   TIGR00225  31 trylskeeakelsettsg.eleGiGiqvqmeddeivivsplegsPAekag.ikpgDkIikvdgksvagmelddavelir 107
                  +y++ ee + l+ t+   +  G+G++v  ++   v+  + +g+ A+++g +++gDk+++v+g s  g++l d+   + 
  MMETSP1137-20121227|9839_1 271 VAYMRGEEGQALEVTLAKpQKGGLGVRVDANN---VVSHLTAGGAAARSGvLRVGDKVLSVNGVSLRGKKLADVLPEVS 346
                 57999999999999987625668999887665...7889999********99********************9987765 PP

>> TIGR02037  degP_htrA_DO: peptidase Do
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.6   0.0   1.4e-10     7e-08     252     332 ..     212     291 ..     205     294 .. 0.88
   2 !    8.5   0.3   0.00034      0.18     253     292 ..     294     334 ..     291     355 .. 0.82

  Alignments for each domain:
  == domain 1    score: 29.6 bits;  conditional E-value: 1.4e-10
   TIGR02037 252 slglekakGalvaevlkgspAekaGlkaGDvilkvngkkiksaadlreaigtlkpgkkvklkilRkgkekeikvtlkeaee 332
                  lg +  +   v+ +++g+pAe+aGl++GDv+ +v+g+ ++  + + +a+g+ +  +  ++ ++R ++ + ++vtl++ ++
  MMETSP1137-20121227|9839_1 212 GLGFKLDSQNAVTGLTRGGPAERAGLRVGDVVWEVDGEALQG-RRVAQALGARRRAHDFRVAYMRGEEGQALEVTLAKPQK 291
                 566666666779**************************9976.678999***************************97655 PP

  == domain 2    score: 8.5 bits;  conditional E-value: 0.00034
   TIGR02037 253 lglekakGalvaevlkgspAekaG.lkaGDvilkvngkkik 292
                 lg++     +v++++ g++A+++G l++GD +l+vng +++
  MMETSP1137-20121227|9839_1 294 LGVRVDANNVVSHLTAGGAAARSGvLRVGDKVLSVNGVSLR 334
                 6777777889*********99999579**********9886 PP

>> TIGR00054  TIGR00054: RIP metalloprotease RseP
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.0   8.1e-07   0.00042     135     238 ..     227     337 ..     216     356 .. 0.73

  Alignments for each domain:
  == domain 1    score: 17.1 bits;  conditional E-value: 8.1e-07
   TIGR00054 135 dknsialeakiedgdeilsvdgkkikdfkdvrkqlaekagevsveila..erenitleeeke......lkelgpkielvlsdvvdnspaekaG.lkeGDkilkidgeklkswr 238
                 +    a +a+++ gd++ +vdg+ +++   v + l + ++   + +      e ++le+++       l  +++ ++ v+s+++  ++a++ G l+ GDk+l+++g+ l+ ++
  MMETSP1137-20121227|9839_1 227 TRGGPAERAGLRVGDVVWEVDGEALQGR-RVAQALGARRRAHDFRVAYmrGEEGQALEVTLAkpqkggLGVRVD-ANNVVSHLTAGGAAARSGvLRVGDKVLSVNGVSLRGKK 337
                 5555678899999********9999985.577777777777777776533444566666655555567777776.8889999999999999996799********99998775 PP

>> TIGR02038  protease_degS: periplasmic serine peptidase DegS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.1       1.4   7.3e+02     183     194 ..     161     172 ..     153     181 .. 0.80
   2 !   15.1   0.0   4.1e-06    0.0021     282     347 ..     223     287 ..     210     291 .. 0.90
   3 ?    0.1   0.0      0.15        77     281     314 ..     303     337 ..     292     356 .. 0.79

  Alignments for each domain:
  == domain 1    score: -3.1 bits;  conditional E-value: 1.4
   TIGR02038 183 vGrqnflqtdaa 194
                 +G + f+qtdaa
  MMETSP1137-20121227|9839_1 161 SGERMFFQTDAA 172
                 58899*****98 PP

  == domain 2    score: 15.1 bits;  conditional E-value: 4.1e-06
   TIGR02038 282 vtevdPngPaaragllvrdvilkldnkevisaeelmdrvaelrPgskvlvtvlrkgkqlelpvvie 347
                 vt++   gPa ragl+v dv+ ++d++  ++++ + + +   r ++   v+ +r ++ + l+v++ 
  MMETSP1137-20121227|9839_1 223 VTGLTRGGPAERAGLRVGDVVWEVDGEALQGRR-VAQALGARRRAHDFRVAYMRGEEGQALEVTLA 287
                 7899999********************999875.789999999999***************99975 PP

  == domain 3    score: 0.1 bits;  conditional E-value: 0.15
   TIGR02038 281 vvtevdPngPaaragll.vrdvilkldnkevisae 314
                 vv ++   g aar+g+l v d +l++++ +  +++
  MMETSP1137-20121227|9839_1 303 VVSHLTAGGAAARSGVLrVGDKVLSVNGVSLRGKK 337
                 7888889999****975389******998877754 PP

>> TIGR00714  hscB: Fe-S protein assembly co-chaperone HscB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.1   1.8e-06   0.00093       4      53 ..      58     105 ..      56     108 .. 0.90

  Alignments for each domain:
  == domain 1    score: 17.2 bits;  conditional E-value: 1.8e-06
   TIGR00714   4 DekaLrkryrklQkqyHPDvsksaqeqaaalqqStelNqAykTLkdplkR 53 
                 D ka++k +rkl +++HPD  k+  ++  a ++   + +Ay  L d  kR
  MMETSP1137-20121227|9839_1  58 DAKAIKKAFRKLSVKWHPD--KNPDNKEEAEKKFQRIANAYTVLSDDEKR 105
                 899****************..8888888999*************998777 PP

>> TIGR02860  spore_IV_B: stage IV sporulation protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.2   0.0   0.00046      0.24     124     170 ..     230     276 ..     213     294 .. 0.77
   2 ?    2.6   0.0     0.022        11     126     158 ..     314     345 ..     293     363 .. 0.73

  Alignments for each domain:
  == domain 1    score: 8.2 bits;  conditional E-value: 0.00046
   TIGR02860 124 sPaeeagiqvGDlilkvngekikeeedvaklineaggeklkltikRk 170
                  Pae+ag++vGD++ +v+ge+++  +  + l  + + ++ ++   R+
  MMETSP1137-20121227|9839_1 230 GPAERAGLRVGDVVWEVDGEALQGRRVAQALGARRRAHDFRVAYMRG 276
                 59******************998876655555555566666655555 PP

  == domain 2    score: 2.6 bits;  conditional E-value: 0.022
   TIGR02860 126 aeeagiqvGDlilkvngekikeeedvaklinea 158
                 a+++ ++vGD +l+vng +++ ++ +a+++ e 
  MMETSP1137-20121227|9839_1 314 ARSGVLRVGDKVLSVNGVSLRGKK-LADVLPEV 345
                 678889************997653.44444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (458 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       131  (0.0319356); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         9  (0.00219405); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.41u 0.17s 00:00:00.57 Elapsed: 00:00:00.61
# Mc/sec: 991.00
//
Query:       MMETSP1137-20121227|9840_1  [L=142]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (142 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       188  (0.0458313); expected 82.0 (0.02)
Passed bias filter:                      131  (0.0319356); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.17s 00:00:00.35 Elapsed: 00:00:00.42
# Mc/sec: 446.25
//
Query:       MMETSP1137-20121227|9841_1  [L=617]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.3e-64  208.5   0.0    8.3e-08   29.8   0.0   11.7 12  TIGR00756 PPR: pentatricopeptide repeat domain


Domain annotation for each model (and alignments):
>> TIGR00756  PPR: pentatricopeptide repeat domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.9   0.0    0.0002      0.81       4      34 ..     162     192 ..     159     193 .. 0.92
   2 !    6.2   0.0   0.00066       2.7       2      28 ..     195     221 ..     194     226 .. 0.87
   3 !   25.9   0.0   3.5e-10   1.4e-06       1      35 []     231     265 ..     231     265 .. 0.97
   4 !   29.5   0.0   2.6e-11   1.1e-07       2      34 ..     267     299 ..     266     300 .. 0.97
   5 !   18.1   0.0   1.1e-07   0.00045       1      35 []     301     335 ..     301     335 .. 0.96
   6 !   29.8   0.0     2e-11   8.3e-08       1      34 [.     336     369 ..     336     370 .. 0.97
   7 !   12.5   0.0   6.8e-06     0.028       2      34 ..     372     404 ..     371     405 .. 0.93
   8 !   20.1   0.0   2.5e-08    0.0001       1      34 [.     406     439 ..     406     440 .. 0.96
   9 !   12.9   0.0   4.8e-06      0.02       4      32 ..     444     472 ..     441     474 .. 0.91
  10 !   22.9   0.0   3.3e-09   1.4e-05       2      34 ..     477     509 ..     476     510 .. 0.95
  11 !    6.6   0.0   0.00051       2.1       1      34 [.     511     544 ..     511     545 .. 0.97
  12 ?   -3.0   0.0      0.54   2.2e+03       1      12 [.     546     557 ..     546     559 .. 0.81

  Alignments for each domain:
  == domain 1    score: 7.9 bits;  conditional E-value: 0.0002
   TIGR00756   4 ntlisglckagrveeAlelfdeMkergivPd 34 
                 n ++ g++++g ++ +l+++++M++ g+  d
  MMETSP1137-20121227|9841_1 162 NNVLGGFARSGTPHQVLDWLRRMEAFGVPRD 192
                 7899***********************9887 PP

  == domain 2    score: 6.2 bits;  conditional E-value: 0.00066
   TIGR00756   2 tyntlisglckagrveeAlelfdeMke 28 
                 ++nt +++l+  +++  A++l++ M  
  MMETSP1137-20121227|9841_1 195 ACNTQLRALVSLKDMASAESLLRMMDG 221
                 688889*******************65 PP

  == domain 3    score: 25.9 bits;  conditional E-value: 3.5e-10
   TIGR00756   1 vtyntlisglckagrveeAlelfdeMkergivPda 35 
                 v++ntl+sg+++a ++e ++ l ++M+e+g+ P++
  MMETSP1137-20121227|9841_1 231 VSFNTLLSGYAHAMQPERVHALVRQMRECGLAPNI 265
                 79*******************************95 PP

  == domain 4    score: 29.5 bits;  conditional E-value: 2.6e-11
   TIGR00756   2 tyntlisglckagrveeAlelfdeMkergivPd 34 
                 ty+tlis++++  ++ +A+ +++eM+ +givPd
  MMETSP1137-20121227|9841_1 267 TYTTLISSYARTSQPLKAHGVLEEMVLAGIVPD 299
                 9*******************************9 PP

  == domain 5    score: 18.1 bits;  conditional E-value: 1.1e-07
   TIGR00756   1 vtyntlisglckagrveeAlelfdeMkergivPda 35 
                 v++ntl+s+++k  + + A+ l  +M + g++Pd+
  MMETSP1137-20121227|9841_1 301 VAFNTLLSAHAKMADSSAAHALVGQMTALGVEPDV 335
                 689******************************96 PP

  == domain 6    score: 29.8 bits;  conditional E-value: 2e-11
   TIGR00756   1 vtyntlisglckagrveeAlelfdeMkergivPd 34 
                 vt+ntlis++++a ++e A++ ++eM++r + Pd
  MMETSP1137-20121227|9841_1 336 VTFNTLISACARAHQPEQAHRALEEMQRRHLTPD 369
                 7********************************9 PP

  == domain 7    score: 12.5 bits;  conditional E-value: 6.8e-06
   TIGR00756   2 tyntlisglckagrveeAlelfdeMkergivPd 34 
                 +++ +++++   g+ + A+ l+++M+++gi  d
  MMETSP1137-20121227|9841_1 372 SFSGVVHAYTLVGNRHAAEGLLRQMRSAGIGAD 404
                 6899*************************9776 PP

  == domain 8    score: 20.1 bits;  conditional E-value: 2.5e-08
   TIGR00756   1 vtyntlisglckagrveeAlelfdeMkergivPd 34 
                 v+yn+l+  +++ag+   A+++  +M+ +gi P+
  MMETSP1137-20121227|9841_1 406 VAYNSLMAMHARAGDAXAAIDCCTRMCQAGIQPT 439
                 68******************************97 PP

  == domain 9    score: 12.9 bits;  conditional E-value: 4.8e-06
   TIGR00756   4 ntlisglckagrveeAlelfdeMkergiv 32 
                 ++l+++l+++g+v+ A+++ +e   +g++
  MMETSP1137-20121227|9841_1 444 SILVNSLVRSGKVDAARSCIEEASNAGVS 472
                 79********************9999986 PP

  == domain 10    score: 22.9 bits;  conditional E-value: 3.3e-09
   TIGR00756   2 tyntlisglckagrveeAlelfdeMkergivPd 34 
                 ++n+lis+++ka+r+eeA +++  M+e+g  P+
  MMETSP1137-20121227|9841_1 477 CFNSLISAYGKARRTEEATQMLTWMQESGTQPS 509
                 89***************************9997 PP

  == domain 11    score: 6.6 bits;  conditional E-value: 0.00051
   TIGR00756   1 vtyntlisglckagrveeAlelfdeMkergivPd 34 
                 v+yn++  + + +g++   ++  ++ +++g+ Pd
  MMETSP1137-20121227|9841_1 511 VSYNAVAAAWASRGNLTQTERAIESARAAGFTPD 544
                 79*******************************9 PP

  == domain 12    score: -3.0 bits;  conditional E-value: 0.54
   TIGR00756   1 vtyntlisglck 12 
                 ++y +l+ ++ +
  MMETSP1137-20121227|9841_1 546 YSYGALLQACER 557
                 699****99966 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (617 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       145  (0.0353486); expected 82.0 (0.02)
Passed bias filter:                       97  (0.023647); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.18s 00:00:00.58 Elapsed: 00:00:00.66
# Mc/sec: 1233.90
//
Query:       MMETSP1137-20121227|9842_1  [L=401]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (401 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        68  (0.0165773); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.17s 00:00:00.43 Elapsed: 00:00:00.35
# Mc/sec: 1512.22
//
Query:       MMETSP1137-20121227|9843_1  [L=475]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (475 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       153  (0.0372989); expected 82.0 (0.02)
Passed bias filter:                       96  (0.0234032); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.15s 00:00:00.50 Elapsed: 00:00:00.50
# Mc/sec: 1253.90
//
Query:       MMETSP1137-20121227|9844_1  [L=385]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.6e-59  199.9   0.3    1.9e-58  196.4   0.2    1.9  1  TIGR01327 PGDH: phosphoglycerate dehydrogenase
    6.6e-06   23.0   1.4    8.7e-06   22.6   0.3    1.6  2  TIGR00936 ahcY: adenosylhomocysteinase
    0.00034   17.8   0.0    0.00059   17.0   0.0    1.3  1  TIGR02853 spore_dpaA: dipicolinic acid synthetase, A subunit
     0.0056   13.7   0.1      0.012   12.5   0.0    1.6  2  TIGR03911 pyrrolys_PylD: pyrrolysine biosynthesis protein PylD


Domain annotation for each model (and alignments):
>> TIGR01327  PGDH: phosphoglycerate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  196.4   0.2   1.8e-61   1.9e-58      51     313 ..      57     343 ..      28     352 .. 0.92

  Alignments for each domain:
  == domain 1    score: 196.4 bits;  conditional E-value: 1.8e-61
   TIGR01327  51 kvteelleaa..ekLkvigRaGvGvDNidieaatkkGilvvNaPegntisaaElalalllalaRkipqadksvkekkWerkkflGtElygktlGviGlGriGsevakrakalgmkvlayDPyiseekaeklgvellkdldellaeaDvitvHvPltketkgligkeelakmKkgviivNcaRGGiidEkALvealeegkvraaalDvfekEPpt.....................dnk...lleldnvvvtpHlgAsteEaqenvavevaeevlealkgevvesavNlp 313
                  + +e+++a   + +k i+    G D +d+++a+k+Gi v   P  +  ++aE+al+l+++l R+i++a  +v +++++ +  +G ++ gkt+Gv+G G+iG+ +     ++g +v++yDPy  ++  +++gv+++ +ldella++ v+++H Pl + t+++i+ke++akmK+g++++N++RGG+id kA++e l++  +  +++Dv+e+E  +                     d++   l++ +nv++tpH++  t++a  ++a + +++++e+++g + ++ v + 
  MMETSP1137-20121227|9844_1  57 DLSAEVIDALasHGVKFIAMRCAGFDRVDLPTAAKHGIPVCRVPAYSPYAVAEHALTLMMSLNRQINKASIRVSQGNYDLSGLVGFDMHGKTVGVVGSGKIGQCLMAILIGMGCEVITYDPYE-NQATKDMGVKYV-TLDELLARSHVVSLHCPLFPGTHHIINKETIAKMKPGAMLINTSRGGLIDTKAVIEGLDNRTIGSLGIDVYEEEAGQfftdmssltdnhpgaslpdsfDSQlalLAARPNVIITPHMAFLTQDALVAIAETTVKNLTEFAAGGPYTNEVKAN 343
                 677899998744569***********************************************************************************************************5.456799****65.5*************************************************************************988888999999999999999998666221456789*********************************999988765 PP

>> TIGR00936  ahcY: adenosylhomocysteinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.6   0.3   8.5e-09   8.7e-06     203     291 ..     144     234 ..     139     256 .. 0.84
   2 ?   -3.3   0.0       0.6   6.2e+02      66      99 ..     300     334 ..     293     346 .. 0.59

  Alignments for each domain:
  == domain 1    score: 22.6 bits;  conditional E-value: 8.5e-09
   TIGR00936 203 iaGktvvvaGyGwvGkGvaerlrGlGarvivtevdpikaleaamdGfevvtmeeaakegdifvtat....Gnkdvireehlekmkdgailana 291
                 + Gktv v+G G +G+ + + l G+G +vi    dp +    +  G + vt++e    ++++        G++++i++e ++kmk ga+l n+
  MMETSP1137-20121227|9844_1 144 MHGKTVGVVGSGKIGQCLMAILIGMGCEVITY--DPYENQATKDMGVKYVTLDELLARSHVVSLHCplfpGTHHIINKETIAKMKPGAMLINT 234
                 67**************************9865..78777666677***********99999865433334********************997 PP

  == domain 2    score: -3.3 bits;  conditional E-value: 0.6
   TIGR00936  66 aevalascnilstqddvaa.alakakgvpvfawkG 99 
                  +v ++    + tqd  +a a ++ k+++ fa  G
  MMETSP1137-20121227|9844_1 300 PNVIITPHMAFLTQDALVAiAETTVKNLTEFAAGG 334
                 56667777777788875541333345666666666 PP

>> TIGR02853  spore_dpaA: dipicolinic acid synthetase, A subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.0   5.8e-07   0.00059     147     277 ..     142     270 ..     130     277 .. 0.78

  Alignments for each domain:
  == domain 1    score: 17.0 bits;  conditional E-value: 5.8e-07
   TIGR02853 147 ftihgsrvlvlGlGrtGktiarllsalgakvsvaareskdlarilelglepvelkeleekvaeiDivintiP..alvltkdvlsklpkhaviiDlaskPGGtDfeyakkrGikalLapgLPGivaPktaGkil 277
                 f +hg  v v+G G++G+ +   l ++g++v        +     ++g++ v+l+el  + + + +     P  + +++k+ ++k++  a++i+  s+ G +D + a   G++ + + +L   v  + aG+ +
  MMETSP1137-20121227|9844_1 142 FDMHGKTVGVVGSGKIGQCLMAILIGMGCEVITYDPY--ENQATKDMGVKYVTLDELLARSHVVSLHCPLFPgtHHIINKETIAKMKPGAMLINT-SRGGLID-TKAVIEGLDNRTIGSLGIDVYEEEAGQFF 270
                 678**************************98765444..4444679999*******98777777777666664489****************984.5655566.45666788777777776667777777665 PP

>> TIGR03911  pyrrolys_PylD: pyrrolysine biosynthesis protein PylD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0      0.59     6e+02      26      53 ..      67      94 ..      59      97 .. 0.78
   2 !   12.5   0.0   1.2e-05     0.012     138     183 ..     139     184 ..     109     224 .. 0.84

  Alignments for each domain:
  == domain 1    score: -2.8 bits;  conditional E-value: 0.59
   TIGR03911 26 tGkslaeiaaeavGttsadiPasekvav 53
                + ++++ ia   +G  + d+P++ k ++
  MMETSP1137-20121227|9844_1 67 ASHGVKFIAMRCAGFDRVDLPTAAKHGI 94
                5567888999999999999999988765 PP

  == domain 2    score: 12.5 bits;  conditional E-value: 1.2e-05
   TIGR03911 138 llkaglkekdvlviGlGkvGtaaavalvkkGakvyvydkekellek 183
                 l+  +++ k v v+G Gk+G+   + l+  G +v +yd+ ++++ k
  MMETSP1137-20121227|9844_1 139 LVGFDMHGKTVGVVGSGKIGQCLMAILIGMGCEVITYDPYENQATK 184
                 556688899*****************************98888766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (385 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       178  (0.0433935); expected 82.0 (0.02)
Passed bias filter:                      154  (0.0375427); expected 82.0 (0.02)
Passed Vit filter:                        24  (0.0058508); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.38u 0.12s 00:00:00.50 Elapsed: 00:00:00.50
# Mc/sec: 1016.32
//
Query:       MMETSP1137-20121227|9845_1  [L=410]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (410 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       103  (0.0251097); expected 82.0 (0.02)
Passed bias filter:                       97  (0.023647); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.14s 00:00:00.45 Elapsed: 00:00:00.35
# Mc/sec: 1546.16
//
Query:       MMETSP1137-20121227|9846_1  [L=593]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      2e-18   64.4  10.3    3.9e-17   60.2   7.2    2.2  1  TIGR00881 2A0104: phosphoglycerate transporter family protein
    4.5e-18   63.2  13.3    7.6e-17   59.1   9.2    2.1  1  TIGR00893 2A0114: D-galactonate transporter
      8e-11   39.3  11.9      8e-11   39.3   8.2    1.5  2  TIGR00895 2A0115: MFS transporter, aromatic acid:H+ symporter (AAHS) family
    3.7e-09   33.4   2.5    7.8e-09   32.4   1.7    1.5  1  TIGR00894 2A0114euk: Na(+)-dependent inorganic phosphate cotransporter
    1.3e-06   25.2   2.5    1.3e-06   25.2   1.8    2.8  3  TIGR00711 efflux_EmrB: drug resistance MFS transporter, drug:H+ antiporter-2 (14 Spanner) (DHA2) family
    9.6e-06   23.6  11.8    9.6e-06   23.6   8.2    3.5  4  TIGR00880 2_A_01_02: multidrug resistance protein


Domain annotation for each model (and alignments):
>> TIGR00881  2A0104: phosphoglycerate transporter family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.2   7.2   5.7e-20   3.9e-17      24     371 ..     132     500 ..     124     506 .. 0.73

  Alignments for each domain:
  == domain 1    score: 60.2 bits;  conditional E-value: 5.7e-20
   TIGR00881  24 eiglsktdlGllls.afsiaYgiskfvvgvvsDrvsarvflaigLilvaivnlflgfssslwvliallalnGlfqglgwppcgrlltkwfsrserGtvvaiwnishnvggallpplvllaialllswhvvfivpgiiaiivslilllllrdsp....qsvglpkleelrnee.................keedkekkeeeltkkeillqyvlknkvl.wlislvnvfvyvvrtgiedWvplYltqekglskekasvavtlfelaglvGtlla...GwlsDklfkgrraplavifmaliivsllvywlivaan....klvvlillfvlGflvyGpilligvaaselapkkaiGtaaglvglfaylggilaglplgylad 371
                 ++ +++++ G+l+s +f++ + +  +v g + Drv +r++l +  +++a ++  ++++ s+   +a ++l G++q++  p ++  l k++ +++r++++++++++  +gg++++  + + + + l w+ +  v+++i+  v++ ++l+l   p    ++ g ++++     e                    + e  +++  +    lq++   + + wl+  +  + ++  ++i  W+  +  ++   +++  ++a +   + g+ G+  a   G+l Dkl +++ +    + +a+ ++++     +  a+    +l  l +  +++   +Gp + +     ++ap+ a+G+a+g+++++  l g la++ +gyl++
  MMETSP1137-20121227|9846_1 132 DLNFDQAQYGILASiGFAAFFSLTSLVAGGIVDRVDPRAVLGLSSLAWAGAMGWQAAARSFSDVLASRFLLGFAQAFTNPASYTALGKLYAPEKRASAFGVYSSGVYIGGGVAA--LSILLIETLGWRGINSVAAAIGAAVAIGAFLVLPSLPpsgaKAAGASSDDSAGTSEmreaesdssidstretdALAQIEASKDAILPVLEGLQELFATPSIrWLLXYG--LRFMAGFCIGVWIVPFYREA-FPAEIGVRFALLKASVNGIAGAASAaggGFLTDKLSQAEPRTPQWLPAAGCVLAIPFWLGTLYADslelSLAALFVEYLVAECWFGPTI-A--SLQKAAPPGAQGLAQGVFSMLT-LAGNLAPAFVGYLVQ 500
                 678999*****998579999**********************************************************************************************..677888889999999999999888877777776544412224566666665554444444555454443211111111122222223333456666666553444333..44455578999*98888888.34455566666666677776665444449*****9999888888888888888877666666665443333444444567888899964.3..345789*************997.5566*********97 PP

>> TIGR00893  2A0114: D-galactonate transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.1   9.2   1.1e-19   7.6e-17      19     374 ..     127     502 ..     123     528 .. 0.76

  Alignments for each domain:
  == domain 1    score: 59.1 bits;  conditional E-value: 1.1e-19
   TIGR00893  19 t.lkedLglsaaqyglvfsafsigyv.lfqlpggllldriGakktlavaivlWglftllqafatalvslivlRvllGlaEaplfPgiikivasWFPakeratavsifnsaqalgaiiggplvgwilvefsWqlvFiieGvlaiilgvlilkvikdkp...ekakvlkeeeksivvggllaeqa.............gkknseakkaqikelLk.........drrviglalgqflvnillyffltwfplylkqerglsl..leagllaslpaivgfvgmvlggilsdlllkkgkslvlarktaiiaglvlsllliatnlvaskiaalalvalaffgkgl.aailwavisdvlskeiagltgGlinllGnlagivgPivigaiaatt 374
                 + ++ dL++++aqyg+ +s+ +++++ l  l++g ++dr+  + +l ++ + W+   + qa+a ++   ++ R+llG a a   P+   ++ + + +++ra+a +++ s+ ++g+ + ++l+++++ +++W+ +  + +++++ +++ ++ v++  p    ka+  + ++ + +++  +ae +             +    ea+k++i+ +L+         ++r ++ +  +f   ++ + +++w+  + ++++  ++    a+l as+ +i+g+ + + gg+l d l + +        +++ +++++     +t +++s  + la + + ++ +   +  ++a  ++ +++ + gl+ G++++l  ++++ +P+ +g++++  
  MMETSP1137-20121227|9846_1 127 MfMNVDLNFDQAQYGILASIGFAAFFsLTSLVAGGIVDRVDPRAVLGLSSLAWAGAMGWQAAARSFSDVLASRFLLGFAQAFTNPASYTALGKLYAPEKRASAFGVYSSGVYIGGGV-AALSILLIETLGWRGINSVAAAIGAAVAIGAFLVLPSLPpsgAKAAGASSDDSAGTSEMREAESDssidstretdalaQ---IEASKDAILPVLEglqelfatpSIRWLLXYGLRF---MAGFCIGVWIVPFYREAFPAEIgvRFALLKASVNGIAGAASAAGGGFLTDKLSQAE--PRTPQWLPAAGCVLAIPFWLGTLYADSLELSLAALFVEYLVAECwFGPTIASLQKAAPPGAQGLAQGVFSMLTLAGNL-APAFVGYLVQYS 502
                 44999**************977776626677************************************************************************************86.68**********************9999999999887541113444445555555555555666677777777765442...3344444433333100111111233333333333...4566688898888888876554216678889********************99986..556667777776667777777778888888888888888888888***************************877775.799****98754 PP

>> TIGR00895  2A0115: MFS transporter, aromatic acid:H+ symporter (AAHS) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.3   8.2   1.2e-13     8e-11      45     397 ..     131     498 ..     125     499 .. 0.69
   2 ?   -3.3   0.1         1   7.1e+02      14      47 ..     513     546 ..     502     547 .. 0.74

  Alignments for each domain:
  == domain 1    score: 39.3 bits;  conditional E-value: 1.2e-13
   TIGR00895  45 kewgldkvelGfllsagLiGmv.lGallfgplaDrigRkrvllvsillfsvftlasalatnvtqLlvlRflaglGlGgllpn.liaLvsEyapkrfratvvglvavGyaiGaavggllaallipafgWrslflvggiipllll...lllikvLpEsikflvek..kpekvrkilnaiapslqaeaqselaeekseekkkrsvvkllfkgklakatllL.wl.lyflllvvvYlltsWlPkLlveagaslskaalllvlln...vGgvlgslllgaladrlgpk...vlalllllaavfavlvvs...tlssptllllllvilGlfvngaqsgllalmaefYptaiRatgvgwaigiGrlgaiigpilagvl 397
                  +++ d+++ G+l s+g +    l +l+ g + Dr++ + vl +s l  +  +   a a ++ + l+ Rfl g     + p+  +aL   yap++ ra++ g++ +G+ iG+ v++ l+ lli ++gWr +  v+++i + ++    l+   Lp s + +      +++  + + + +     +++ e+    + e+ k ++  +l   +  +at+ + wl  y l  ++ + +  W+    +ea        ++l+  +   ++g++++   g+l d+l +    +   l+ ++ v+a+        + s +l l +l++  l++    +  +a   ++ p+ + + ++g+ +++  l + ++p+ +g+l
  MMETSP1137-20121227|9846_1 131 VDLNFDQAQYGILASIGFAAFFsLTSLVAGGIVDRVDPRAVLGLSSLAWAGAMGWQAAARSFSDVLASRFLLGFAQAFTNPAsYTALGKLYAPEK-RASAFGVYSSGVYIGGGVAA-LSILLIETLGWRGINSVAAAIGAAVAigaFLVLPSLPPSGAKAAGAssDDSAGTSEMREAESDSSIDSTRETDALAQIEASKDAILPVLEGLQELFATPSIrWLlXYGLRFMAGFCIGVWIVPFYREAFPAEIGVRFALLKASvngIAGAASAAGGGFLTDKLSQAeprTPQWLPAAGCVLAIPFWLgtlYADSLELSLAALFVEYLVAECWFGPTIASLQKAAPPGAQGLAQGV-FSMLTLAGNLAPAFVGYL 498
                 58999*************9865389**********************************************776655554442578888899988.8999************9987.688***********99998887766511156777777775555444333333344555555555566666777777777777777888877777777776545515668888999999998555554432222222233333300256677777889999999754321556666667777654443311333444444555555566666667777777777777777777775.455566777777777777 PP

  == domain 2    score: -3.3 bits;  conditional E-value: 1
   TIGR00895  14 yqirvlilsflivlvdGldllvlgfaapalskew 47 
                 ++  + i s+l++lv G  l++++ a+  +  +w
  MMETSP1137-20121227|9846_1 513 TVPFLYISSALAFLVAGEKLVAAAAASIMIEVKW 546
                 5555667888999999999999988887777666 PP

>> TIGR00894  2A0114euk: Na(+)-dependent inorganic phosphate cotransporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.4   1.7   1.1e-11   7.8e-09      70     218 ..     132     278 ..      87     287 .. 0.79

  Alignments for each domain:
  == domain 1    score: 32.4 bits;  conditional E-value: 1.1e-11
   TIGR00894  70 efaWseklqGlilssvfygsli..lqipvGylakkygtkkvigaalllssvlslliPiaaavgvalvivlRvlqGlaeglvspaqhellakWiPPkERsrlvsavlsGaqlGtlivlpisGlicesdlgWpavfYifgivgtvvli.lwlvl 218
                   ++++++ G+ l+s+ +++++  + +  G + ++   + v+g + l      ++  +aaa ++  v++ R+l G+a++   pa+++ l k   P+ R+++ +++ sG  +G  ++  +s l++e  lgW  +  + +++g++v i ++lvl
  MMETSP1137-20121227|9846_1 132 DLNFDQAQYGI-LASIGFAAFFslTSLVAGGIVDRVDPRAVLGLSSLA--WAGAMGWQAAARSFSDVLASRFLLGFAQAFTNPASYTALGKLYAPEKRASAFGVYSSGVYIGGGVAA-LSILLIET-LGWRGINSVAAAIGAAVAIgAFLVL 278
                 45566777775.556666655322445555667899999999998764..56778889******************************************************98765.57799999.9****************99556665 PP

>> TIGR00711  efflux_EmrB: drug resistance MFS transporter, drug:H+ antiporter-2 (14 Spanner) (DHA2) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.1     0.015        10     287     339 ..     134     187 ..     127     189 .. 0.81
   2 !   25.2   1.8     2e-09   1.3e-06      60     179 ..     162     280 ..     154     289 .. 0.87
   3 ?    1.9   0.2     0.024        16      88     151 ..     438     500 ..     424     504 .. 0.76

  Alignments for each domain:
  == domain 1    score: 2.5 bits;  conditional E-value: 0.015
   TIGR00711 287 gytalqaGla.ilpvglaalllsPiaGrladkidlrllvliglilyavglylia 339
                 +++  q G++ ++  + +  l+s +aG ++d++d+r ++ ++ +  a +++++a
  MMETSP1137-20121227|9846_1 134 NFDQAQYGILaSIGFAAFFSLTSLVAGGIVDRVDPRAVLGLSSLAWAGAMGWQA 187
                 5677778865155678888899*****************999999999888876 PP

  == domain 2    score: 25.2 bits;  conditional E-value: 2e-09
   TIGR00711  60 lakrlgerklflvsvlaFtlssllcgvannlelliifRviQgfggglliplseslllseyppekrglalalvglavlvaPvlGPiLgGwiieayeWrwiFlinvpiGiivvvvallilke 179
                 + +r+  r +  +s la++ +    + a +++ ++  R + gf ++   p s + l + y pekr+ a ++++ +v ++  +   L+  +ie++ Wr i  +   iG++v + a+l+l++
  MMETSP1137-20121227|9846_1 162 IVDRVDPRAVLGLSSLAWAGAMGWQAAARSFSDVLASRFLLGFAQAFTNPASYTALGKLYAPEKRASAFGVYSSGVYIGGGV-AALSILLIETLGWRGINSVAAAIGAAVAIGAFLVLPS 280
                 5566666777667777777666667889**************************************************9876.479*******************************997 PP

  == domain 3    score: 1.9 bits;  conditional E-value: 0.024
   TIGR00711  88 nnlelliifRviQgfggglliplseslllseyppekrglalalvglavlvaPvlGPiLgGwiie 151
                 ++lel + +  +  +++      + + l +++pp  +gla +++++ +++a  l P   G++++
  MMETSP1137-20121227|9846_1 438 DSLELSLAALFVEYLVAECWFGPTIASLQKAAPPGAQGLAQGVFSM-LTLAGNLAPAFVGYLVQ 500
                 555555555555555555555556788999***************9.68899999999999975 PP

>> TIGR00880  2_A_01_02: multidrug resistance protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0      0.71   4.8e+02      84     123 ..      68     109 ..      55     114 .. 0.66
   2 !   23.6   8.2   1.4e-08   9.6e-06       6     139 ..     147     279 ..     143     280 .. 0.92
   3 ?   -3.2   0.0       2.6   1.7e+03      55      69 ..     352     366 ..     340     377 .. 0.67
   4 ?    2.7   0.5     0.041        28      71     116 ..     460     504 ..     421     530 .. 0.72

  Alignments for each domain:
  == domain 1    score: -1.3 bits;  conditional E-value: 0.71
   TIGR00880  84 ersvalgllsagialgpilGpllGavla..qalgwralflil 123
                 e  +     s+g++ ++  G+++ ++l   + +++++lf+++
  MMETSP1137-20121227|9846_1  68 ESDQTWEAHSSGMVPAAXAGLIVLSLLStvNQWSRSVLFYVV 109
                 666666777788888888888888888844444556777765 PP

  == domain 2    score: 23.6 bits;  conditional E-value: 1.4e-08
   TIGR00880   6 gyAlgqlvvsplsglltdrvGrkpvllvglfifvlsqllfalssnitvliiarilqGfgaaaalvagaaliadiikeeersvalgllsagialgpilGpllGavlaqalgwralflilallallafilllfllp 139
                 g+A+   ++s+++g ++drv  + vl ++ +  + +    a++++++  + +r+l Gf+ a+  +a  + + +++++e+r+ a+g+ s+g+ +g  +++ l  +l++ lgwr +  ++a++ ++++i  +++lp
  MMETSP1137-20121227|9846_1 147 GFAAFFSLTSLVAGGIVDRVDPRAVLGLSSLAWAGAMGWQAAARSFSDVLASRFLLGFAQAFTNPASYTALGKLYAPEKRASAFGVYSSGVYIGGGVAA-LSILLIETLGWRGINSVAAAIGAAVAIGAFLVLP 279
                 678888889999999999*******99999888888888999****************************************************98876.567888*******************999999887 PP

  == domain 3    score: -3.2 bits;  conditional E-value: 2.6
   TIGR00880  55 iiarilqGfgaaaal 69 
                 + +r+++Gf  ++ +
  MMETSP1137-20121227|9846_1 352 YGLRFMAGFCIGVWI 366
                 456777777766654 PP

  == domain 4    score: 2.7 bits;  conditional E-value: 0.041
   TIGR00880  71 agaaliadiikeeersvalgllsagialgpilGpllGavlaqalgw 116
                  + a++ ++++++  + a g++s+ + +g++ +p++ ++l+q++  
  MMETSP1137-20121227|9846_1 460 PTIASLQKAAPPGAQGLAQGVFSMLTLAGNL-APAFVGYLVQYSDI 504
                 56688999999999*********99999986.55555566655443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (593 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       107  (0.0260848); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.50u 0.16s 00:00:00.66 Elapsed: 00:00:00.45
# Mc/sec: 1739.32
//
Query:       MMETSP1137-20121227|9847_1  [L=418]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (418 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       277  (0.067528); expected 82.0 (0.02)
Passed bias filter:                      155  (0.0377864); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.11s 00:00:00.44 Elapsed: 00:00:00.56
# Mc/sec: 985.20
//
Query:       MMETSP1137-20121227|9848_1  [L=341]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   1.8e-102  339.7   0.0   2.2e-102  339.5   0.0    1.0  1  TIGR01978 sufC: FeS assembly ATPase SufC
    5.3e-22   76.4   0.0    5.4e-21   73.1   0.0    1.9  1  TIGR02769 nickel_nikE: nickel import ATP-binding protein NikE
      1e-21   75.4   0.0    1.4e-12   45.4   0.0    2.1  2  TIGR01188 drrA: daunorubicin resistance ABC transporter, ATP-binding protein
    1.3e-21   74.8   0.0      3e-21   73.6   0.0    1.6  1  TIGR01166 cbiO: cobalt ABC transporter, ATP-binding protein
    1.7e-21   74.8   0.0    2.5e-21   74.3   0.0    1.2  1  TIGR03411 urea_trans_UrtD: urea ABC transporter, ATP-binding protein UrtD
    1.8e-21   74.4   0.0    2.5e-21   73.9   0.0    1.1  1  TIGR03873 F420-0_ABC_ATP: proposed F420-0 ABC transporter, ATP-binding protein
    5.4e-21   73.0   0.0    1.2e-09   35.8   0.0    2.0  2  TIGR03864 PQQ_ABC_ATP: ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system
      4e-20   70.1   0.0    9.4e-20   68.9   0.0    1.5  1  TIGR03410 urea_trans_UrtE: urea ABC transporter, ATP-binding protein UrtE
    3.4e-19   66.4   0.1    1.9e-18   63.9   0.1    1.8  1  TIGR03375 type_I_sec_LssB: type I secretion system ATPase
    3.8e-18   63.6   0.0    1.3e-17   61.8   0.0    1.7  1  TIGR02857 CydD: thiol reductant ABC exporter, CydD subunit
    6.3e-18   62.4   0.1    2.8e-08   30.6   0.0    2.1  2  TIGR01842 type_I_sec_PrtD: type I secretion system ATPase
    2.1e-17   61.1   0.0      2e-16   57.9   0.0    2.0  1  TIGR03608 L_ocin_972_ABC: putative bacteriocin export ABC transporter, lactococcin 972 group
    4.1e-17   59.5   0.0    4.4e-08   29.6   0.0    2.1  2  TIGR03796 NHLM_micro_ABC1: NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein
    1.3e-16   58.8   0.2    1.3e-07   29.3   0.0    2.1  2  TIGR03740 galliderm_ABC: lantibiotic protection ABC transporter, ATP-binding subunit
    1.5e-16   57.7   0.0    3.7e-08   30.1   0.0    2.0  2  TIGR02633 xylG: D-xylose ABC transporter, ATP-binding protein
    1.7e-16   57.9   0.0    1.4e-07   28.4   0.0    2.0  2  TIGR02204 MsbA_rel: ABC transporter, permease/ATP-binding protein
    1.2e-15   55.4   0.0      5e-08   30.5   0.0    2.2  2  TIGR02324 CP_lyasePhnL: phosphonate C-P lyase system protein PhnL
    1.2e-15   54.9   0.1    3.3e-08   30.4   0.0    2.0  2  TIGR03719 ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family
    1.6e-15   54.6   0.1    8.2e-09   32.4   0.0    2.1  2  TIGR00955 3a01204: pigment precursor permease
    1.9e-15   54.5   0.0    7.2e-07   26.3   0.0    2.1  2  TIGR01288 nodI: nodulation ABC transporter NodI
    5.2e-15   52.6   0.0      4e-09   33.1   0.0    2.1  2  TIGR00958 3a01208: antigen peptide transporter 2
    1.3e-14   51.5   0.0    1.6e-07   28.1   0.0    2.0  2  TIGR03797 NHLM_micro_ABC2: NHLM bacteriocin system ABC transporter, ATP-binding protein
      2e-14   51.5   0.1    1.6e-07   28.9   0.0    2.2  2  TIGR02211 LolD_lipo_ex: lipoprotein releasing system, ATP-binding protein
    2.6e-14   50.5   0.0    6.2e-07   26.1   0.0    2.0  2  TIGR03269 met_CoM_red_A2: methyl coenzyme M reductase system, component A2
    3.4e-14   50.9   0.0    7.8e-07   26.8   0.0    2.1  2  TIGR02673 FtsE: cell division ATP-binding protein FtsE
    3.7e-14   50.5   0.0    2.3e-13   47.9   0.0    1.9  1  TIGR02770 nickel_nikD: nickel import ATP-binding protein NikD
    3.7e-14   50.5   0.0    2.5e-13   47.8   0.0    1.9  1  TIGR00972 3a0107s01c2: phosphate ABC transporter, ATP-binding protein
    8.9e-14   49.4   0.0    3.7e-07   27.9   0.0    2.1  2  TIGR01189 ccmA: heme ABC exporter, ATP-binding protein CcmA
    1.4e-13   48.2   0.2    1.6e-08   31.5   0.1    2.2  2  TIGR02868 CydC: thiol reductant ABC exporter, CydC subunit
    2.2e-13   47.4   0.0    1.9e-06   24.4   0.0    2.1  2  TIGR02203 MsbA_lipidA: lipid A export permease/ATP-binding protein MsbA
    3.2e-13   47.8   0.0    1.1e-05   23.2   0.0    2.2  2  TIGR00960 3a0501s02: type II secretory pathway family protein
    4.8e-13   47.0   0.0    2.4e-12   44.7   0.0    1.8  1  TIGR00968 3a0106s01: sulfate ABC transporter, ATP-binding protein
    7.4e-13   45.7   0.0    1.9e-12   44.4   0.0    1.5  1  TIGR01193 bacteriocin_ABC: ABC-type bacteriocin transporter
    1.2e-12   45.5   0.1    6.2e-06   23.4   0.0    2.1  2  TIGR03005 ectoine_ehuA: ectoine/hydroxyectoine ABC transporter, ATP-binding protein EhuA
    1.2e-12   44.8   0.1    7.2e-07   25.7   0.0    2.0  2  TIGR01846 type_I_sec_HlyB: type I secretion system ATPase
    1.9e-12   44.9   0.0    1.3e-07   29.1   0.0    2.1  2  TIGR02315 ABC_phnC: phosphonate ABC transporter, ATP-binding protein
    2.1e-12   44.8   0.0      2e-11   41.5   0.0    1.9  1  TIGR03265 PhnT2: putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein
    5.1e-12   43.3   0.1    1.9e-11   41.4   0.0    1.7  1  TIGR03258 PhnT: 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT
    5.4e-12   43.6   0.1    8.2e-11   39.7   0.0    2.1  1  TIGR02982 heterocyst_DevA: ABC exporter ATP-binding subunit, DevA family
    8.5e-12   42.9   0.0    6.8e-06   23.6   0.0    2.2  2  TIGR03522 GldA_ABC_ATP: gliding motility-associated ABC transporter ATP-binding subunit GldA
    1.2e-11   40.8   0.0    2.7e-11   39.6   0.0    1.5  1  TIGR00956 3a01205: pleiotropic drug resistance family protein
    1.8e-11   41.6   0.2    2.6e-10   37.8   0.1    2.0  1  TIGR01186 proV: glycine betaine/L-proline transport ATP binding subunit
    2.5e-11   41.6   0.0    3.8e-11   40.9   0.0    1.3  1  TIGR03771 anch_rpt_ABC: anchored repeat-type ABC transporter, ATP-binding subunit
    2.7e-10   38.1   0.0    5.5e-10   37.0   0.0    1.5  1  TIGR01277 thiQ: thiamine ABC transporter, ATP-binding protein
    9.9e-10   35.5   0.1    1.4e-06   25.0   0.0    2.1  2  TIGR01192 chvA: glucan exporter ATP-binding protein
    1.2e-09   35.8   0.0    1.3e-08   32.5   0.0    2.1  1  TIGR02323 CP_lyasePhnK: phosphonate C-P lyase system protein PhnK
    5.3e-09   33.6   0.0    1.8e-05   22.0   0.0    2.0  2  TIGR02142 modC_ABC: molybdate ABC transporter, ATP-binding protein
    9.6e-09   32.6   0.0    6.2e-08   29.9   0.0    1.9  1  TIGR01187 potA: polyamine ABC transporter, ATP-binding protein
    1.6e-08   32.3   0.0    2.3e-08   31.7   0.0    1.3  1  TIGR01184 ntrCD: nitrate ABC transporter, ATP-binding proteins C and D
    1.3e-07   28.8   0.0     0.0003   17.7   0.0    2.1  2  TIGR02314 ABC_MetN: D-methionine ABC transporter, ATP-binding protein
    1.8e-07   26.2   0.1      2e-05   19.4   0.0    1.8  2  TIGR01257 rim_protein: rim ABC transporter
    1.8e-06   24.6   0.0     0.0001   18.8   0.0    2.2  2  TIGR01194 cyc_pep_trnsptr: cyclic peptide transporter
    2.3e-06   24.2   0.0      0.017   11.4   0.0    2.1  2  TIGR00954 3a01203: peroxysomal long chain fatty acyl transporter
    7.9e-06   22.1   0.1     0.0083   12.1   0.0    2.1  2  TIGR00630 uvra: excinuclease ABC subunit A
    0.00013   17.3   0.1      0.076    8.2   0.0    2.0  2  TIGR00957 MRP_assoc_pro: multi drug resistance-associated protein (MRP)
    0.00018   18.4   0.1    0.00052   16.9   0.0    1.7  2  TIGR03415 ABC_choXWV_ATP: choline ABC transporter, ATP-binding protein
     0.0038   12.5   0.1     0.0078   11.5   0.0    1.5  2  TIGR01271 CFTR_protein: cystic fibrosis transmembrane conductor regulator (CFTR)
  ------ inclusion threshold ------
      0.012   11.8   0.0      0.018   11.1   0.0    1.2  1  TIGR01069 mutS2: MutS2 family protein
      0.012   11.2   0.1      0.063    8.8   0.0    1.8  2  TIGR02168 SMC_prok_B: chromosome segregation protein SMC


Domain annotation for each model (and alignments):
>> TIGR01978  sufC: FeS assembly ATPase SufC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  339.5   0.0  3.1e-104  2.2e-102       1     241 [.      90     331 ..      90     333 .. 0.98

  Alignments for each domain:
  == domain 1    score: 339.5 bits;  conditional E-value: 3.1e-104
   TIGR01978   1 LkikdlhvsvedkeiLkglnlevkkGevhaimGpnGsGkstLskvlaghekyevtsGeiklkg.qdlleleveeraraGlflafqapeeipGvsnkeflrsalnavrkargeeeldllefekllkeklelleldeelleRslneGfsGGekkrneilqlallePklaiLDeiDsGlDvDalkivaegvnklreeekalliithyerllelikPdvvhvlldGrivksGdvelakelekkgyd 241
                 Lk++ l ++v dk+iLkg++l+v++GevhaimGpnGsGkst skvl+gh++yevt Ge++++g ++llele+eera++G+flafq+p+eipGv n++flr a+n++r a g +e d lef  +l ekl++++++ ++l+R++n+GfsGGekkrneilq+ ll+P+laiLDe+DsGlD+Dalk+va+gvn +r+e +a+++ithy+rll++ikPd+vhv+++G+iv+sG+ e+akele++gy+
  MMETSP1137-20121227|9848_1  90 LKVTGLEAQVGDKPILKGVDLTVRRGEVHAIMGPNGSGKSTFSKVLVGHPAYEVTGGEVNYRGtEQLLELEPEERAQQGVFLAFQYPVEIPGVANNDFLRLAVNKRRGALGLPEYDPLEFFGVLGEKLQAVSMNPDFLSRDVNSGFSGGEKKRNEILQMVLLDPELAILDETDSGLDIDALKTVAAGVNAFRSEGNAIILITHYQRLLDYIKPDFVHVMAEGKIVRSGGPEIAKELEAEGYA 331
                 78999********************************************************984579******************************************************************************************************************************************************************************7 PP

>> TIGR02769  nickel_nikE: nickel import ATP-binding protein NikE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.1   0.0   7.8e-23   5.4e-21      15     231 ..      93     315 ..      85     328 .. 0.81

  Alignments for each domain:
  == domain 1    score: 73.1 bits;  conditional E-value: 7.8e-23
   TIGR02769  15 ggllgkkqrkavldnvslsleeGetvallGrsGaGkstlarlllGle..kPakGevsfrGqd.lakldrkqrkafrrdvqlvfqdsi..savnprksvreiigeP..lrhltsldeserkariaellelvelrsevldk.lPrqlsGGqlqriniaralavePklivldeavsnldlvlqasilellkklkqefGlaylfithdlrlvqkfa.qrvlvldeGqive 231
                 +gl  + + k++l++v+l++++Ge  a++G  G+Gkst++++l+G    + + Gev +rG + l +l++++  + ++ v l fq  +    v  +  +r  ++       l + d  e      e l++v ++++ l + + + +sGG  +r  i + + ++P+l +lde+ s ld+    ++ + +++++ e G a+++ith  rl +++  + v v+ eG+iv 
  MMETSP1137-20121227|9848_1  93 TGLEAQVGDKPILKGVDLTVRRGEVHAIMGPNGSGKSTFSKVLVGHPayEVTGGEVNYRGTEqLLELEPEE--RAQQGVFLAFQYPVeiPGVANNDFLRLAVNKRrgALGLPEYDPLEFFGVLGEKLQAVSMNPDFLSRdVNSGFSGGEKKRNEILQMVLLDPELAILDETDSGLDIDALKTVAAGVNAFRSE-GNAIILITHYQRLLDYIKpDFVHVMAEGKIVR 315
                 5677778899***********************************75225689*******65277777765..56899*****9653113455555556555443003344555666666778899**********99834678***********************************99********9975.99**************9736688*******97 PP

>> TIGR01188  drrA: daunorubicin resistance ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.0   0.0   3.9e-09   2.7e-07       5      40 ..     101     136 ..      98     174 .. 0.89
   2 !   45.4   0.0     2e-14   1.4e-12     123     213 ..     233     324 ..     214     334 .. 0.90

  Alignments for each domain:
  == domain 1    score: 28.0 bits;  conditional E-value: 3.9e-09
   TIGR01188   5 efkAvdgvnlkveegevfglLGPnGAGKtttikmLt 40 
                 +   ++gv+l v++gev +++GPnG GK+t  k+L 
  MMETSP1137-20121227|9848_1 101 DKPILKGVDLTVRRGEVHAIMGPNGSGKSTFSKVLV 136
                 666799************************999986 PP

  == domain 2    score: 45.4 bits;  conditional E-value: 2e-14
   TIGR01188 123 ktysgGmrrrlelaasliaqPevlfLDEPtiGLDprtrraiwdlieelkkegvtilltthyleeadkl.adrvaiidkGkiiaedtpeeLKe 213
                   +sgG ++r e+   ++ +Pe++ LDE  +GLD  + +++   ++++++eg +i+l thy    d +  d v ++ +Gki+  ++pe  Ke
  MMETSP1137-20121227|9848_1 233 SGFSGGEKKRNEILQMVLLDPELAILDETDSGLDIDALKTVAAGVNAFRSEGNAIILITHYQRLLDYIkPDFVHVMAEGKIVRSGGPEIAKE 324
                 469**************************************************************9983599**************987764 PP

>> TIGR01166  cbiO: cobalt ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.6   0.0   4.3e-23     3e-21       6     186 ..     103     293 ..      99     297 .. 0.84

  Alignments for each domain:
  == domain 1    score: 73.6 bits;  conditional E-value: 4.3e-23
   TIGR01166   6 evlkglnlavergevlallGanGaGkstlllhlnGl..lrPksGkvlldGeeldysrkgllelrkkvalvlqdpddq..lfaad.vdedvafgplnlGlsea...everrvrealaavdis.gleerp.thllsgGekkrvaiagavalrpdvllldePtagldpaGaeqlleilrklreeGktvvisthd 186
                  +lkg++l+v+rgev a++G+nG+Gkst+ + l G      + G+v + G+e   + +   ++++ v+l +q p +   +   d +   v      lGl+e    e   ++ e l+av+++ ++ +r   + +sgGekkr  i  +v l p++ +lde  +gld +  + +++ ++ +r eG+ +++ th 
  MMETSP1137-20121227|9848_1 103 PILKGVDLTVRRGEVHAIMGPNGSGKSTFSKVLVGHpaYEVTGGEVNYRGTEQLLELEPEERAQQGVFLAFQYPVEIpgVANNDfLRLAVNKRRGALGLPEYdplEFFGVLGEKLQAVSMNpDFLSRDvNSGFSGGEKKRNEILQMVLLDPELAILDETDSGLDIDALKTVAAGVNAFRSEGNAIILITHY 293
                 49*********************************63378899*************99999************98741122222122344444557999885222566799********9756766651568**********************************************************6 PP

>> TIGR03411  urea_trans_UrtD: urea ABC transporter, ATP-binding protein UrtD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.3   0.0   3.6e-23   2.5e-21       2     224 ..      89     317 ..      88     326 .. 0.89

  Alignments for each domain:
  == domain 1    score: 74.3 bits;  conditional E-value: 3.6e-23
   TIGR03411   2 iLevedvsvsfdgfkalndlslsveegelrviiGpnGaGkttllDvitGk..trpdeGsvlfkgk.dltklkeaeiarlGigRkfqkpsvfeeltvlenlelalkadksvlallfarlskeekerieevleligLeek..adkkaglLshGqkqwLeigmllvqepkllllDePvaGmtdeetektaellkela.kersvvvvehDmefvrela.ekvtvlheGkvlaeG 224
                 +L+v++++ + +    l+ ++l+v++ge+++i+GpnG+Gk+t+  v++G+   + + G+v ++g+ +l++l+ +e a++G+   fq p  +  ++  + l+la+++ ++ l l  +    e    + e l+ ++++     +   +  s G+k++ ei  +++ +p+l +lDe  +G+  +  +++a  +++ + + ++++++ h    ++ ++ + v v++eGk++  G
  MMETSP1137-20121227|9848_1  89 LLKVTGLEAQVGDKPILKGVDLTVRRGEVHAIMGPNGSGKSTFSKVLVGHpaYEVTGGEVNYRGTeQLLELEPEERAQQGVFLAFQYPVEIPGVANNDFLRLAVNKRRGALGLP-EYDPLEFFGVLGEKLQAVSMNPDflSRDVNSGFSGGEKKRNEILQMVLLDPELAILDETDSGLDIDALKTVAAGVNAFRsEGNAIILITHYQRLLDYIKpDFVHVMAEGKIVRSG 317
                 6899999999999999*********************************83346899*******999***************************************99998765.555566778889999999998762234566779***********99*********************99999999998715689**************9678*********9988 PP

>> TIGR03873  F420-0_ABC_ATP: proposed F420-0 ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.9   0.0   3.5e-23   2.5e-21       2     222 ..      90     320 ..      89     330 .. 0.86

  Alignments for each domain:
  == domain 1    score: 73.9 bits;  conditional E-value: 3.5e-23
   TIGR03873   2 lrlsrvsvraggrlivddvdvtaPaGaltgllGPnGsGkstllrllaG..llapdaGevdlagad.lkalsrrararrvalveqdsdaevp.lsvrdvvalGriPhrslfaa...dsdedaevvdralarvels.sladrdls.tlsGGerqrvhlaralaqePklllldePtnhldvsaqlellalvrelaaegvtvvvalhdlnl.aasvcdhvvvldgGrvvaaGppa 222
                 l+++ +  ++g ++i+++vd+t+  G++ +++GPnGsGkst+ ++l+G  + + + Gev++ g++ l  l+  +ra++   +  +   e+p ++  d + l     r++++    d+ e  +v  + l +v+++ ++ +rd++  +sGGe++r ++ + +  +P+l +lde    ld+ a   + a v+   +eg ++++  h   l      d v v+++G++v +G p+
  MMETSP1137-20121227|9848_1  90 LKVTGLEAQVGDKPILKGVDLTVRRGEVHAIMGPNGSGKSTFSKVLVGhpAYEVTGGEVNYRGTEqLLELEPEERAQQGVFLAFQYPVEIPgVANNDFLRLAVNKRRGALGLpeyDPLEFFGVLGEKLQAVSMNpDFLSRDVNsGFSGGEKKRNEILQMVLLDPELAILDETDSGLDIDALKTVAAGVNAFRSEGNAIILITHYQRLlDYIKPDFVHVMAEGKIVRSGGPE 320
                 678889999***************************************55577899***998865599********997777766666665388899999999999999986322566677899999999999758*****96269**********************************9999999*99999999999988877651556689999**********9885 PP

>> TIGR03864  PQQ_ABC_ATP: ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.8   0.0   1.7e-11   1.2e-09       2      64 ..      90     154 ..      89     177 .. 0.83
   2 !   35.2   0.0   2.6e-11   1.8e-09     131     216 ..     233     319 ..     211     333 .. 0.80

  Alignments for each domain:
  == domain 1    score: 35.8 bits;  conditional E-value: 1.7e-11
   TIGR03864   2 leveglsfaygkrralddvsltvakgefvaLLGpnGaGkstLfslltr..LyeakegeikvaGld 64 
                 l+v+gl+ + g++ +l++v+ltv++ge+ a++GpnG+Gkst  ++l +   ye + ge++  G++
  MMETSP1137-20121227|9848_1  90 LKVTGLEAQVGDKPILKGVDLTVRRGEVHAIMGPNGSGKSTFSKVLVGhpAYEVTGGEVNYRGTE 154
                 789******************************************99833477777888777765 PP

  == domain 2    score: 35.2 bits;  conditional E-value: 2.6e-11
   TIGR03864 131 reLnGGhrrrveiarallhePklLLlDeatvGLDiesraalveevrelvreeglsvLWath...lvdeveaedrlvvlhkGkvlaqGaa 216
                    +GG+++r ei + +l +P+l +lDe+  GLDi++ +++ + v++   +eg +++  th   l+d ++  d + v+ +Gk++ +G +
  MMETSP1137-20121227|9848_1 233 SGFSGGEKKRNEILQMVLLDPELAILDETDSGLDIDALKTVAAGVNAFR-SEGNAIILITHyqrLLDYIK-PDFVHVMAEGKIVRSGGP 319
                 4589*****************************************9876.78888888899455567776.58999********99965 PP

>> TIGR03410  urea_trans_UrtE: urea ABC transporter, ATP-binding protein UrtE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.9   0.0   1.4e-21   9.4e-20       1     215 [.      90     318 ..      90     330 .. 0.82

  Alignments for each domain:
  == domain 1    score: 68.9 bits;  conditional E-value: 1.4e-21
   TIGR03410   1 levenlevaYgesevlrdvslevekgevvavlGrngvGkttllkalvgl..lkvksGeieleg.editklkpeervkaGiayvpqGreifpkltveenlelglealkkkekkipeeiyelFPvlke..........mlkRr.gGdLsGGqqqqlaiaRaLvtePklllLDePteGiqPsiikeiekvikelakekdlaillveqvldfalel.adrylvlerGevvaege 215
                 l+v+ le++ g+  +l++v+l+v++gev a++G ng Gk+t+ k lvg+  ++v+ Ge++++g e++ +l+peer+++G+    q    +p ++ ++ l+l++++++ +    + + +e+F vl e          +l+R      sGG ++   i   ++ +P+l +LDe   G+    +k +++ +++ ++e++ ai+l+ ++  +   +  d + v+ +G++v +g 
  MMETSP1137-20121227|9848_1  90 LKVTGLEAQVGDKPILKGVDLTVRRGEVHAIMGPNGSGKSTFSKVLVGHpaYEVTGGEVNYRGtEQLLELEPEERAQQGVFLAFQYPVEIPGVANNDFLRLAVNKRRGALGLPEYDPLEFFGVLGEklqavsmnpdFLSRDvNSGFSGGEKKRNEILQMVLLDPELAILDETDSGLDIDALKTVAAGVNAFRSEGN-AIILITHYQRLLDYIkPDFVHVMAEGKIVRSGG 318
                 789999******************************************7336899******9935799**********************************99999865555557788898886521111111114556523569**********************************************9866.566665555554444158889********9985 PP

>> TIGR03375  type_I_sec_LssB: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.9   0.1   2.8e-20   1.9e-18     479     685 ..     101     319 ..      75     328 .. 0.79

  Alignments for each domain:
  == domain 1    score: 63.9 bits;  conditional E-value: 2.8e-20
   TIGR03375 479 ekaaLknvslkikpGekvaiiGriGsGKstllklllg..lyepteGsvlldgvd.irqidpadl.rrnigyvpqdvtLfyGtlrdNialgapaaedeel....lraaelaGvt.efvkkhpkGldlqigerGesLSgGQrqavalaRallkdppillLDEPtsalDnsseekllerLkella.dkTlvlvtHrtslLelv..driivldkGrivadGpk 685
                 +k+ Lk v l+++ Ge  ai+G +GsGKst  k+l+g   ye t G+v + g++ + +++p++  ++ + +  q ++ + G   +     a + +  +l       +e +Gv  e ++  +   d   ++ ++++SgG ++   +  ++l dp++ +LDE  s lD  + +++   ++++ + ++ ++l+tH + lL+ +  d + v+ +G+iv  G  
  MMETSP1137-20121227|9848_1 101 DKPILKGVDLTVRRGEVHAIMGPNGSGKSTFSKVLVGhpAYEVTGGEVNYRGTEqLLELEPEERaQQGVFLAFQYPVEIPGVANNDFLRLAVNKRRGALglpeYDPLEFFGVLgEKLQAVSMNPDFLSRDVNSGFSGGEKKRNEILQMVLLDPELAILDETDSGLDIDALKTVAAGVNAFRSeGNAIILITHYQRLLDYIkpDFVHVMAEGKIVRSGGP 319
                 6889********************************9556************9735689998861455777778888888866554333222222222222224567788874244455555555555555788**********************************************9889**************986689**********99865 PP

>> TIGR02857  CydD: thiol reductant ABC exporter, CydD subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.8   0.0   1.9e-19   1.3e-17     283     520 ..      51     297 ..      47     304 .. 0.78

  Alignments for each domain:
  == domain 1    score: 61.8 bits;  conditional E-value: 1.9e-19
   TIGR02857 283 qyHak..aegvaaaealvevldaeeqpeaekapltaaassslelenvsvayegrkpalkevsltvepgelvalvGaSGaGKstllklllgf..vepteGailvnga.elaeldadswrkq.iawvpQkPllfegtvaen.irlarkdaseae...vkealerag.ldelvkalpqgleteiGergagLSgGqrqRlaLArallrdapllllDEPtahLDaeteaevlealrela.egrtvllvaHrlala 520
                  yHa   + g aa +++  ++++  + +  +a+ + ++   l++++++ +  ++  +lk+v+ltv+ ge+ a++G+ G+GKst  k+l+g    e+t+G+++  g+ +l el++++  +q +    Q P+ ++g   ++ +rla ++   a      + le  g l e ++a+    +    +  +g SgG+++R  + ++ l d +l +lDE  + LD ++ ++v + ++++  eg++++l++H + l+
  MMETSP1137-20121227|9848_1  51 GYHAGyyRSGAAAPSSVSYTMASGLRSTIIRASTAGEE--LLKVTGLEAQVGDKP-ILKGVDLTVRRGEVHAIMGPNGSGKSTFSKVLVGHpaYEVTGGEVNYRGTeQLLELEPEERAQQgVFLAFQYPVEIPGVANNDfLRLAVNKRRGALglpEYDPLEFFGvLGEKLQAVSMNPDFLSRDVNSGFSGGEKKRNEILQMVLLDPELAILDETDSGLDIDALKTVAAGVNAFRsEGNAIILITHYQRLL 297
                 58886324677777777777774444444444444444..79******8877776.**********************************643799*******6654899**9999888857778899*999985554445677666665543333344554441345556665555666667789***********************************************989*********98776 PP

>> TIGR01842  type_I_sec_PrtD: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.9   0.0   6.3e-10   4.4e-08     328     377 ..      99     150 ..      85     166 .. 0.82
   2 !   30.6   0.0     4e-10   2.8e-08     453     536 ..     233     318 ..     228     325 .. 0.93

  Alignments for each domain:
  == domain 1    score: 29.9 bits;  conditional E-value: 6.3e-10
   TIGR01842 328 eekkktlkgisfalkaGealaiiGpsgsGkssLarllvG..vwlpasGsvrl 377
                  + k++lkg++++++ Ge+ ai+Gp gsGks+  ++lvG  +++ + G+v  
  MMETSP1137-20121227|9848_1  99 VGDKPILKGVDLTVRRGEVHAIMGPNGSGKSTFSKVLVGhpAYEVTGGEVNY 150
                 46789**********************************3335556677765 PP

  == domain 2    score: 30.6 bits;  conditional E-value: 4e-10
   TIGR01842 453 aaLsgGqrqRiaLaRalygdPklvvLDePnanLDeeGeqalakalkelkarkitvvvithrpsllelv..dkilvlkdGalkafGe 536
                 ++ sgG ++R  +   +  dP l +LDe ++ LD +  + +a+ +++ + ++ ++++ith  +ll+ +  d + v+ +G++ + G 
  MMETSP1137-20121227|9848_1 233 SGFSGGEKKRNEILQMVLLDPELAILDETDSGLDIDALKTVAAGVNAFRSEGNAIILITHYQRLLDYIkpDFVHVMAEGKIVRSGG 318
                 678***************************************************************996679********998875 PP

>> TIGR03608  L_ocin_972_ABC: putative bacteriocin export ABC transporter, lactococcin 972 group
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.9   0.0   2.8e-18     2e-16       3     197 ..      94     297 ..      92     302 .. 0.78

  Alignments for each domain:
  == domain 1    score: 57.9 bits;  conditional E-value: 2.8e-18
   TIGR03608   3 niskkfkdkeilkklslkiekGelvaivGesGsGKstlLnilglle..kkdsgkvilegkekaklkskkaskllreklgylFqnfaLlenetveen..lelalklkkkskk.......ekekkkkevlekvgl.ekklkkkiye.lsgGekqRvalarillkeselilADEPtgsLDkknreevlellkelkeegktiiivtHdpeva 197
                  ++ +++dk ilk ++l++ +Ge+ ai+G  GsGKst+  +l      ++  g+v + g+e  +l + + ++  ++ +   Fq    +e   v +n  l+la+  ++           e    + e l++v +    l++ + + +sgGek+R  + +++l ++el + DE  + LD +  ++v + ++  ++eg+ ii++tH + + 
  MMETSP1137-20121227|9848_1  94 GLEAQVGDKPILKGVDLTVRRGEVHAIMGPNGSGKSTFSKVLVGHPayEVTGGEVNYRGTE--QLLELEPEERAQQGVFLAFQYP--VEIPGVANNdfLRLAVNKRRGALGlpeydplEFFGVLGEKLQAVSMnPDFLSRDVNSgFSGGEKKRNEILQMVLLDPELAILDETDSGLDIDALKTVAAGVNAFRSEGNAIILITHYQRLL 297
                 6788999*********************************9976651155689******99..6677777777777777778865..5666666662266666555543322211111333456789999***5455777775449*********************************************************88765 PP

>> TIGR03796  NHLM_micro_ABC1: NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.9   0.0   2.1e-09   1.5e-07     490     542 ..     100     154 ..      86     169 .. 0.89
   2 !   29.6   0.0   6.4e-10   4.4e-08     614     696 ..     233     320 ..     217     333 .. 0.86

  Alignments for each domain:
  == domain 1    score: 27.9 bits;  conditional E-value: 2.1e-09
   TIGR03796 490 leapliedfslslkpGqrvAlvGgsGsGkstiaklvaG..lyepwsGeilfDgkp 542
                  ++p++++++l+++ G+  A++G+ GsGkst +k++ G   ye + Ge+ + g++
  MMETSP1137-20121227|9848_1 100 GDKPILKGVDLTVRRGEVHAIMGPNGSGKSTFSKVLVGhpAYEVTGGEVNYRGTE 154
                 589***********************************55699******998875 PP

  == domain 2    score: 29.6 bits;  conditional E-value: 6.4e-10
   TIGR03796 614 anlsGGqrqRleiARaLvknPsiLilDEatsaLDaetEkaid...enlrrRgctciivaH..RLstiRdcdeiivlerGkvverGtHe 696
                 + +sGG+++R ei   +  +P + ilDE+ s LD  + k++    +++r  g ++i+++H  RL      d + v+ +Gk+v+ G  e
  MMETSP1137-20121227|9848_1 233 SGFSGGEKKRNEILQMVLLDPELAILDETDSGLDIDALKTVAagvNAFRSEGNAIILITHyqRLLDYIKPDFVHVMAEGKIVRSGGPE 320
                 569*********************************9999972225789***********8889888899*************99655 PP

>> TIGR03740  galliderm_ABC: lantibiotic protection ABC transporter, ATP-binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.3   0.0   1.9e-09   1.3e-07       1      57 [.      90     148 ..      90     156 .. 0.83
   2 !   27.6   0.0   6.5e-09   4.5e-07     121     213 ..     231     324 ..     212     332 .. 0.85

  Alignments for each domain:
  == domain 1    score: 29.3 bits;  conditional E-value: 1.9e-09
   TIGR03740   1 letknlskkfkkqavvnnvslkvkknsvygllGpnGaGkstllklltGl..lrktsGei 57 
                 l++  l  + +++ +++ v+l+v++ +v++++GpnG+Gkst  k+l+G    + t Ge+
  MMETSP1137-20121227|9848_1  90 LKVTGLEAQVGDKPILKGVDLTVRRGEVHAIMGPNGSGKSTFSKVLVGHpaYEVTGGEV 148
                 577788899999**********************************9952144555555 PP

  == domain 2    score: 27.6 bits;  conditional E-value: 6.5e-09
   TIGR03740 121 kakqfslGmkqrlGiaiallnkPkllildePtnGldPlGiqelreliksfpekGitvilsshilsevella.dhiGiiseGklkyekkidkded 213
                   + fs G k+r  i   +l +P+l ilde   Gld   ++ +   +++f+++G ++il +h    ++ +  d++ +++eGk+   +  +  ++
  MMETSP1137-20121227|9848_1 231 VNSGFSGGEKKRNEILQMVLLDPELAILDETDSGLDIDALKTVAAGVNAFRSEGNAIILITHYQRLLDYIKpDFVHVMAEGKIVRSGGPEIAKE 324
                 4578**********************************************************99999988549********9987665555555 PP

>> TIGR02633  xylG: D-xylose ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.1   0.0   5.3e-10   3.7e-08       1      80 [.      89     169 ..      89     202 .. 0.79
   2 !   25.9   0.0     1e-08   7.1e-07     402     482 ..     233     314 ..     211     327 .. 0.84

  Alignments for each domain:
  == domain 1    score: 30.1 bits;  conditional E-value: 5.3e-10
   TIGR02633   1 llemkgivkkfggvkaldnidlklraGeivslcGenGaGkstlmkvlsgvyphGtydGeilfegee.lkassirdterkGi 80 
                 ll++ g+  + g+   l+++dl++r Ge+ ++ G nG+Gkst+ kvl g   +    Ge+ + g+e l   +  +  ++G+
  MMETSP1137-20121227|9848_1  89 LLKVTGLEAQVGDKPILKGVDLTVRRGEVHAIMGPNGSGKSTFSKVLVGHPAYEVTGGEVNYRGTEqLLELEPEERAQQGV 169
                 6778888889999999*********************************7667777899*999876133344444445555 PP

  == domain 2    score: 25.9 bits;  conditional E-value: 1e-08
   TIGR02633 402 arlsGGnqqkavlakllllnprvlildeptrGvdvGakyeiyklinqlaqeGvaiivvsselaevlGl.sdrvlvigeGklk 482
                 +++sGG++++  + +++ll+p++ ilde   G+d+ a   +   +n++  eG aii+++     +  +  d v v+ eGk+ 
  MMETSP1137-20121227|9848_1 233 SGFSGGEKKRNEILQMVLLDPELAILDETDSGLDIDALKTVAAGVNAFRSEGNAIILITHYQRLLDYIkPDFVHVMAEGKIV 314
                 578********999*******************************************9864433333326999999999975 PP

>> TIGR02204  MsbA_rel: ABC transporter, permease/ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.5   0.0   3.7e-09   2.6e-07     351     414 ..     100     166 ..      79     187 .. 0.85
   2 !   28.4   0.0     2e-09   1.4e-07     477     557 ..     235     318 ..     226     331 .. 0.90

  Alignments for each domain:
  == domain 1    score: 27.5 bits;  conditional E-value: 3.7e-09
   TIGR02204 351 pdqkaldgldltvrpGetvalvGPsGaGkstllelllrf..ydPqsGailldGvd.lreldpeelre 414
                  d++ l+g+dltvr Ge+ a++GP G+Gkst  ++l  +  y+ + G++   G++ l el+pee  +
  MMETSP1137-20121227|9848_1 100 GDKPILKGVDLTVRRGEVHAIMGPNGSGKSTFSKVLVGHpaYEVTGGEVNYRGTEqLLELEPEERAQ 166
                 58899******************************987555999*****999985388999987544 PP

  == domain 2    score: 28.4 bits;  conditional E-value: 2e-09
   TIGR02204 477 LsGGqkqriaiarailkdapiLLLdeatsaLdaeseqlvqqaleelmk.grttlviah..rLatvlkadrivvldkGriveqGt 557
                 +sGG k+r  i + +l d  + +Lde  s Ld ++ ++v   +++  + g + ++i h  rL   +k d + v+ +G+iv +G 
  MMETSP1137-20121227|9848_1 235 FSGGEKKRNEILQMVLLDPELAILDETDSGLDIDALKTVAAGVNAFRSeGNAIILITHyqRLLDYIKPDFVHVMAEGKIVRSGG 318
                 7*******************************************98651667777999889*******************9995 PP

>> TIGR02324  CP_lyasePhnL: phosphonate C-P lyase system protein PhnL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.5   0.0   7.2e-10     5e-08      20      77 ..     101     160 ..      87     169 .. 0.86
   2 !   22.7   0.0   1.7e-07   1.2e-05     148     212 ..     233     297 ..     223     308 .. 0.89

  Alignments for each domain:
  == domain 1    score: 30.5 bits;  conditional E-value: 7.2e-10
   TIGR02324  20 klpvlkevsleveaGelvalsGksGaGkstllkslya..nYlpesgrilvrhegeivdlv 77 
                   p+lk v+l+v+ Ge+ a++G+ G+Gkst+ k+l +   Y + +g++ +r ++++++l 
  MMETSP1137-20121227|9848_1 101 DKPILKGVDLTVRRGEVHAIMGPNGSGKSTFSKVLVGhpAYEVTGGEVNYRGTEQLLELE 160
                 46899******************************76337************99999874 PP

  == domain 2    score: 22.7 bits;  conditional E-value: 1.7e-07
   TIGR02324 148 atfsGGekqRvniaraliadrPiLLLdePtasLdaanrkvvvelikeakargaaligifhdeevr 212
                 + fsGGek+R  i + ++ d  + +Lde  + Ld    k+v   ++  +++g a+i i h + + 
  MMETSP1137-20121227|9848_1 233 SGFSGGEKKRNEILQMVLLDPELAILDETDSGLDIDALKTVAAGVNAFRSEGNAIILITHYQRLL 297
                 68************999997777799**********************************88765 PP

>> TIGR03719  ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.4   0.0   4.7e-10   3.3e-08     312     373 ..      79     140 ..      70     165 .. 0.86
   2 !   22.6   0.0   1.1e-07   7.8e-06     162     224 ..     235     300 ..     219     316 .. 0.64

  Alignments for each domain:
  == domain 1    score: 30.4 bits;  conditional E-value: 4.7e-10
   TIGR03719 312 ippgerlGdkvievenlskafgdklliddlsfklpkggivGviGpnGaGkstlfklitgkek 373
                 i  +   G+++++v++l+ + gdk +++ +++++ +g +  ++GpnG+Gkst+ k+++g+  
  MMETSP1137-20121227|9848_1  79 IIRASTAGEELLKVTGLEAQVGDKPILKGVDLTVRRGEVHAIMGPNGSGKSTFSKVLVGHPA 140
                 5567778***************************************************9854 PP

  == domain 2    score: 22.6 bits;  conditional E-value: 1.1e-07
   TIGR03719 162 lsGGekrrvalcrlllekPdlllldePtnhldaesvaWlekflkeyk..G.tvvavthdryfldnv 224
                 +sGGek+r  + +++l +P+l +lde    ld ++++ +   ++ ++  G +++++th + +ld +
  MMETSP1137-20121227|9848_1 235 FSGGEKKRNEILQMVLLDPELAILDETDSGLDIDALKTVAAGVNAFRseGnAIILITHYQRLLDYI 300
                 566666666666666666666666666666666666666666665542223566666666666654 PP

>> TIGR00955  3a01204: pigment precursor permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   0.1   5.9e-07   4.1e-05      34      83 ..      98     146 ..      69     159 .. 0.81
   2 !   32.4   0.0   1.2e-10   8.2e-09     165     255 ..     233     323 ..     226     331 .. 0.91

  Alignments for each domain:
  == domain 1    score: 20.2 bits;  conditional E-value: 5.9e-07
   TIGR00955  34 kkpekellknvsGvaksGellAvlGsSGaGKtTLlnalafrsekglkvsg 83 
                 + + k +lk+v  +++ Ge+ A++G+ G+GK+T  ++l    + ++++ g
  MMETSP1137-20121227|9848_1  98 QVGDKPILKGVDLTVRRGEVHAIMGPNGSGKSTFSKVLVGHPAYEVTG-G 146
                 337899****************************99999888777776.4 PP

  == domain 2    score: 32.4 bits;  conditional E-value: 1.2e-10
   TIGR00955 165 kglSgGerkRlalaselltdPilLfcDEPTsGLDsfsaasvvkvLkklaqkgktviltiHQPsselfelfdkiillaeGrvvylGspeeav 255
                  g SgGe+kR  + + +l dP l ++DE  sGLD    ++v   ++ + ++g+ +il  H      +   d + ++aeG++v +G pe a 
  MMETSP1137-20121227|9848_1 233 SGFSGGEKKRNEILQMVLLDPELAILDETDSGLDIDALKTVAAGVNAFRSEGNAIILITHYQRLLDYIKPDFVHVMAEGKIVRSGGPEIAK 323
                 699*********************************************************877777778899*************998765 PP

>> TIGR01288  nodI: nodulation ABC transporter NodI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.3   0.0     1e-08   7.2e-07       6      53 ..      91     138 ..      87     155 .. 0.90
   2 !   26.1   0.0   1.2e-08   8.5e-07     134     220 ..     233     320 ..     227     329 .. 0.88

  Alignments for each domain:
  == domain 1    score: 26.3 bits;  conditional E-value: 1e-08
   TIGR01288   6 dlvgvsksygdkvvvndlsftiaagecfgllgpngagkstiarlvlgl 53 
                 +++g++   gdk +++ + +t+ +ge+  ++gpng+gkst +++++g 
  MMETSP1137-20121227|9848_1  91 KVTGLEAQVGDKPILKGVDLTVRRGEVHAIMGPNGSGKSTFSKVLVGH 138
                 578889999************************************996 PP

  == domain 2    score: 26.1 bits;  conditional E-value: 1.2e-08
   TIGR01288 134 adlsggmkrrltlaralindpqllildepttgldpharhliwerlrsllargktilltthlmeeaerlc.drlcvleagrkiaegrpd 220
                 + +sgg k+r  + + ++ dp+l ilde  +gld  a + +   + ++ + g++i+l th+    + +  d + v+ +g+ +  g p+
  MMETSP1137-20121227|9848_1 233 SGFSGGEKKRNEILQMVLLDPELAILDETDSGLDIDALKTVAAGVNAFRSEGNAIILITHYQRLLDYIKpDFVHVMAEGKIVRSGGPE 320
                 5689*********************************************************998888743777788888777777776 PP

>> TIGR00958  3a01208: antigen peptide transporter 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.1   0.0   5.7e-11     4e-09     493     539 ..     101     149 ..      98     177 .. 0.86
   2 !   17.4   0.0   3.3e-06   0.00023     618     695 ..     235     317 ..     230     332 .. 0.84

  Alignments for each domain:
  == domain 1    score: 33.1 bits;  conditional E-value: 5.7e-11
   TIGR00958 493 dkpvlkdLtftlepGevvalVGPsGsGKStvaall..enlYqPtgGqvl 539
                 dkp+lk+  +t++ Gev a+ GP+GsGKSt   +l  +  Y+ tgG+v 
  MMETSP1137-20121227|9848_1 101 DKPILKGVDLTVRRGEVHAIMGPNGSGKSTFSKVLvgHPAYEVTGGEVN 149
                 79*****************************988833357999999986 PP

  == domain 2    score: 17.4 bits;  conditional E-value: 3.3e-06
   TIGR00958 618 lsgGqkqriAiARALvrkPrvLiLDeAtSALDaeveqllqe...sksaksrtvlliah..rLstvekadkilvlkkgsvvelG 695
                  sgG k+r  i   ++ +P + iLDe  S LD +  +++ +     ++++ +++li+h  rL    k d + v+ +g++v+ G
  MMETSP1137-20121227|9848_1 235 FSGGEKKRNEILQMVLLDPELAILDETDSGLDIDALKTVAAgvnAFRSEGNAIILITHyqRLLDYIKPDFVHVMAEGKIVRSG 317
                 69*******************************7777777654455678899****98446777779999********99988 PP

>> TIGR03797  NHLM_micro_ABC2: NHLM bacteriocin system ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.1   0.0   2.2e-09   1.6e-07     465     533 ..     101     171 ..      91     176 .. 0.84
   2 !   21.4   0.0   2.3e-07   1.6e-05     586     669 ..     232     320 ..     213     334 .. 0.88

  Alignments for each domain:
  == domain 1    score: 28.1 bits;  conditional E-value: 2.2e-09
   TIGR03797 465 gplvLddvslkiepGefvaivGaSGsGKStllrlLLgFekPe..sGsvlyDGqd.lekldvqavRrqlGvVL 533
                  + +L+ v l+++ Ge  ai+G+ GsGKSt+ ++L+g    e   G+v y G++ l +l+ ++ R q Gv L
  MMETSP1137-20121227|9848_1 101 DKPILKGVDLTVRRGEVHAIMGPNGSGKSTFSKVLVGHPAYEvtGGEVNYRGTEqLLELEPEE-RAQQGVFL 171
                 5789*********************************976542269*****975377887665.77778766 PP

  == domain 2    score: 21.4 bits;  conditional E-value: 2.3e-07
   TIGR03797 586 ggtlSGGQrQRlliAralvrkPrillfDEATSALDNrtQaiVsesleklkv...tRiviAH..RLSTirnadrilvleeGrvveqGsye 669
                  ++ SGG ++R  i + +   P++ ++DE  S LD  + ++V + +++++    + i+i H  RL    + d + v++eG++v +G  e
  MMETSP1137-20121227|9848_1 232 NSGFSGGEKKRNEILQMVLLDPELAILDETDSGLDIDALKTVAAGVNAFRSegnAIILITHyqRLLDYIKPDFVHVMAEGKIVRSGGPE 320
                 5679***************************************999998752226799999999*********************9764 PP

>> TIGR02211  LolD_lipo_ex: lipoprotein releasing system, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.9   0.0   2.3e-09   1.6e-07      18      77 ..     102     164 ..      80     175 .. 0.84
   2 !   20.8   0.0   7.2e-07     5e-05     139     219 ..     232     313 ..     215     315 .. 0.83

  Alignments for each domain:
  == domain 1    score: 28.9 bits;  conditional E-value: 2.3e-09
   TIGR02211  18 ievlkgvsleiekgelvaivGssGsGkstllhllggld..kptsGevllkGk.elsklssner 77 
                   +lkgv+l +++ge+ ai+G  GsGkst+  +l g    + t Gev  +G  +l +l  +er
  MMETSP1137-20121227|9848_1 102 KPILKGVDLTVRRGEVHAIMGPNGSGKSTFSKVLVGHPayEVTGGEVNYRGTeQLLELEPEER 164
                 569*******************************99752268999**9999624666655555 PP

  == domain 2    score: 20.8 bits;  conditional E-value: 7.2e-07
   TIGR02211 139 pselsGGerqrvaiaralvnkPklvladePtgnldkktakkifelllelnkekntallvvthdlelakkld..rvlelkdgkl 219
                  s +sGGe++r  i + ++ +P+l + de  + ld ++ k++   ++ +++e + a++++th ++l + ++   v  + +gk+
  MMETSP1137-20121227|9848_1 232 NSGFSGGEKKRNEILQMVLLDPELAILDETDSGLDIDALKTVAAGVNAFRSE-GNAIILITHYQRLLDYIKpdFVHVMAEGKI 313
                 6889**************************************9999998776.5689999*****998765114445667665 PP

>> TIGR03269  met_CoM_red_A2: methyl coenzyme M reductase system, component A2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.1   0.0   8.9e-09   6.2e-07       2      62 ..      91     151 ..      90     165 .. 0.93
   2 !   22.4   0.0   1.2e-07   8.6e-06     425     518 ..     232     324 ..     222     330 .. 0.84

  Alignments for each domain:
  == domain 1    score: 26.1 bits;  conditional E-value: 8.9e-09
   TIGR03269   2 evenltkkfdglevlknisleleeGevlGilGksGaGksvllhllrGldeyeptsGkiiyh 62 
                 +v  l  +  ++ +lk ++l++  Gev  i+G  G+Gks + ++l G   ye t G++ y+
  MMETSP1137-20121227|9848_1  91 KVTGLEAQVGDKPILKGVDLTVRRGEVHAIMGPNGSGKSTFSKVLVGHPAYEVTGGEVNYR 151
                 6778889999************************************************997 PP

  == domain 2    score: 22.4 bits;  conditional E-value: 1.2e-07
   TIGR03269 425 pdelseGerhrvalaqvlikeprivildeptGtmdpitkvkvaesilkareeleetfvivshdmdfvlev.cdraalmrdGkivkiGdpeeivee 518
                  + +s Ge++r  + q+++ +p + ilde    +d  + ++va  +   r e + + ++++h   ++  +  d + +m +Gkiv+ G pe i +e
  MMETSP1137-20121227|9848_1 232 NSGFSGGEKKRNEILQMVLLDPELAILDETDSGLDIDALKTVAAGVNAFRSEGN-AIILITHYQRLLDYIkPDFVHVMAEGKIVRSGGPE-IAKE 324
                 56789******************************999********99999966.5677777766666552599*************996.5555 PP

>> TIGR02673  FtsE: cell division ATP-binding protein FtsE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.0   0.0   3.3e-07   2.3e-05      14      65 ..     101     154 ..      89     174 .. 0.83
   2 !   26.8   0.0   1.1e-08   7.8e-07     135     209 ..     232     306 ..     213     311 .. 0.89

  Alignments for each domain:
  == domain 1    score: 22.0 bits;  conditional E-value: 3.3e-07
   TIGR02673  14 gveaLkdvslkiekgeflfltGasGaGkttllklllg..aekpsrGevevaged 65 
                 +  +Lk v+l++++ge+  ++G+ G+Gk+t+ k+l+g  a + + Gev+  g++
  MMETSP1137-20121227|9848_1 101 DKPILKGVDLTVRRGEVHAIMGPNGSGKSTFSKVLVGhpAYEVTGGEVNYRGTE 154
                 5679*******************************9822456788999888864 PP

  == domain 2    score: 26.8 bits;  conditional E-value: 1.1e-08
   TIGR02673 135 peelsgGeqqRvaiaRaivnkPelllaDePtGnlDdelserildllkelnkrGttvivathdeelvervkkrvle 209
                  + +sgGe++R  i   ++ +Pel + De    lD +  + + + ++++ ++G ++i+ th ++l++ +k   ++
  MMETSP1137-20121227|9848_1 232 NSGFSGGEKKRNEILQMVLLDPELAILDETDSGLDIDALKTVAAGVNAFRSEGNAIILITHYQRLLDYIKPDFVH 306
                 5678*************************************************************9988766665 PP

>> TIGR02770  nickel_nikD: nickel import ATP-binding protein NikD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.9   0.0   3.3e-15   2.3e-13       3     208 ..     106     317 ..     104     324 .. 0.84

  Alignments for each domain:
  == domain 1    score: 47.9 bits;  conditional E-value: 3.3e-15
   TIGR02770   3 qdvnlslkrgkvlalvGesGsGksltalailglldkeltktsGeilldgke.laal...alrgreialilqnPrs....afnPlltikeqlletlkalekls.kqakelivealeavgLeeaeevlkkypfelsGGmlqRvmialallleaplliaDePttdlDvvvqaevLklleelrekrglgillithDlgvvaela.devavmekGkiverg 208
                 ++v+l+++rg+v a++G  GsGks+ ++ ++g  +     t Ge+  +g e l++l   +  ++ + l +q P++    a n  l ++ + +     l +    + + ++ e l+av+++ ++ + +     +sGG  +R  i   +ll++ l i De  + lD+++ ++v   ++ +r+ +g +i+lith  + + ++  d v vm +Gkiv +g
  MMETSP1137-20121227|9848_1 106 KGVDLTVRRGEVHAIMGPNGSGKSTFSKVLVGHPA--YEVTGGEVNYRGTEqLLELepeERAQQGVFLAFQYPVEipgvANNDFLRLAVNKRRGALGLPEYDpLEFFGVLGEKLQAVSMN-PDFLSRDVNSGFSGGEKKRNEILQMVLLDPELAILDETDSGLDIDALKTVAAGVNAFRS-EGNAIILITHYQRLLDYIKpDFVHVMAEGKIVRSG 317
                 78**************************9999765..66789******976255556656666778888999886444477888888766666655555555577788999*******98.8889999999********************************************99986.699**************9737799********865 PP

>> TIGR00972  3a0107s01c2: phosphate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.8   0.0   3.6e-15   2.5e-13       2     226 ..      90     318 ..      89     327 .. 0.80

  Alignments for each domain:
  == domain 1    score: 47.8 bits;  conditional E-value: 3.6e-15
   TIGR00972   2 levknlklfygekealkdvnleikknkvtaliGpsGcGkstllrslnrlndlveevrieGkvllegkdiydkkldvvelrkkvGmvfqkpnpfp.msiydnvaygl.rlkg...ikdkk..eldeiveesLkkaalwdevkdklkksalsLsGGqqqrlciaralavePevlLlDePtsaLDpiatekieeliqeLkkk.ytivivthnmqqaarvs.dktaffleGelveege 226
                 l+v+ l+   g+k  lk v+l +++ +v a++Gp G+Gkst+ + l           + G+v ++g++   +   + + ++ v + fq p   p ++  d + +++ + +g   + + +  e+  +  e+L+ +++  +  ++  +   + sGG ++r  i + + ++Pe+ +lDe  s LD  a +++ + ++  +++   i+++th       +  d + +++eG++v +g 
  MMETSP1137-20121227|9848_1  90 LKVTGLEAQVGDKPILKGVDLTVRRGEVHAIMGPNGSGKSTFSKVLVGHPA---YEVTGGEVNYRGTEQLLELEPEERAQQGVFLAFQYPVEIPgVANNDFLRLAVnKRRGalgLPEYDplEFFGVLGEKLQAVSMNPDFLSR--DVNSGFSGGEKKRNEILQMVLLDPELAILDETDSGLDIDALKTVAAGVNAFRSEgNAIILITHYQRLLDYIKpDFVHVMAEGKIVRSGG 318
                 5677888999********************************999854332...334679******999988888888999999******99994344444444431333311133333114457889999999999666554..445678*********************************************998789******99988888548899999999998875 PP

>> TIGR01189  ccmA: heme ABC exporter, ATP-binding protein CcmA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.9   0.0   5.3e-09   3.7e-07       1      64 [.      90     155 ..      90     182 .. 0.82
   2 !   19.6   0.0   1.8e-06   0.00013     127     188 ..     234     295 ..     213     301 .. 0.90

  Alignments for each domain:
  == domain 1    score: 27.9 bits;  conditional E-value: 5.3e-09
   TIGR01189   1 LeaeelaveRgervlleglsfelaaGealvveGpnGiGKttLLRilaGL..lkpesGevelndkel 64 
                 L+++ l ++ g + +l+g+++++  Ge+ ++ GpnG+GK+t  ++l G    + + Gev++ ++e+
  MMETSP1137-20121227|9848_1  90 LKVTGLEAQVGDKPILKGVDLTVRRGEVHAIMGPNGSGKSTFSKVLVGHpaYEVTGGEVNYRGTEQ 155
                 5678899999**************************************622567789999987764 PP

  == domain 2    score: 19.6 bits;  conditional E-value: 1.8e-06
   TIGR01189 127 qLsAGqkrRlalarLllskaplWiLDEPttalDkegvellaellaaHlargGivllathqdl 188
                   s G k+R  + +++l    l iLDE    lD ++ +++a+ ++a  ++g +++l th ++
  MMETSP1137-20121227|9848_1 234 GFSGGEKKRNEILQMVLLDPELAILDETDSGLDIDALKTVAAGVNAFRSEGNAIILITHYQR 295
                 5799*******************************************************875 PP

>> TIGR02868  CydC: thiol reductant ABC exporter, CydC subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.5   0.1   2.3e-10   1.6e-08     331     394 ..      86     150 ..       9     166 .. 0.73
   2 !   14.7   0.0   2.8e-05    0.0019     471     528 ..     234     292 ..     224     294 .. 0.91

  Alignments for each domain:
  == domain 1    score: 31.5 bits;  conditional E-value: 2.3e-10
   TIGR02868 331 ekptlelrdlsvsypgaeevlkgvsldlepGervavvGasGaGKstLlallag..lldplkGevtl 394
                 ++  l++ +l+++  ++ ++lkgv+l+++ Ge +a++G+ G+GKst  ++l+g  + +   Gev  
  MMETSP1137-20121227|9848_1  86 GEELLKVTGLEAQVGDK-PILKGVDLTVRRGEVHAIMGPNGSGKSTFSKVLVGhpAYEVTGGEVNY 150
                 33457888888888776.67*******************************994445666666655 PP

  == domain 2    score: 14.7 bits;  conditional E-value: 2.8e-05
   TIGR02868 471 rlSGGerqRlalARaLladapvllLDEPtehLDaeteeelledLla.aeegrtvvlvth 528
                  +SGGe++R  +  ++l d ++ +LDE   +LD ++ + + + ++a  +eg++++l+th
  MMETSP1137-20121227|9848_1 234 GFSGGEKKRNEILQMVLLDPELAILDETDSGLDIDALKTVAAGVNAfRSEGNAIILITH 292
                 59******************************************961567888****** PP

>> TIGR02203  MsbA_lipidA: lipid A export permease/ATP-binding protein MsbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   0.0   3.3e-07   2.3e-05     344     390 ..     100     148 ..      81     160 .. 0.82
   2 !   24.4   0.0   2.8e-08   1.9e-06     469     552 ..     233     319 ..     223     337 .. 0.85

  Alignments for each domain:
  == domain 1    score: 20.9 bits;  conditional E-value: 3.3e-07
   TIGR02203 344 ddrealdsislkveaGevvalvGrsGsGkstlvnllpRF..yepdsGei 390
                  d+++l++++l+v+ Gev a++G+ GsGkst  ++l     ye + Ge+
  MMETSP1137-20121227|9848_1 100 GDKPILKGVDLTVRRGEVHAIMGPNGSGKSTFSKVLVGHpaYEVTGGEV 148
                 47899***************************99886432266666665 PP

  == domain 2    score: 24.4 bits;  conditional E-value: 2.8e-08
   TIGR02203 469 skLsGGqRqRlaiaRallkdaPiLiLDeatsaLDneseRlvqaaLerlmkgRtt.lviah..RLstiekaDrivvlddGkiverGth 552
                 s  sGG ++R  i   +l d  + iLDe  s LD ++ ++v a ++++  +  + ++i h  RL    k D + v+ +Gkiv +G  
  MMETSP1137-20121227|9848_1 233 SGFSGGEKKRNEILQMVLLDPELAILDETDSGLDIDALKTVAAGVNAFRSEGNAiILITHyqRLLDYIKPDFVHVMAEGKIVRSGGP 319
                 568*********************************************977665156888778999999**************9964 PP

>> TIGR00960  3a0501s02: type II secretory pathway family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.6   0.0   2.3e-07   1.6e-05      12      64 ..      98     152 ..      89     165 .. 0.83
   2 !   23.2   0.0   1.5e-07   1.1e-05     137     207 ..     233     303 ..     215     313 .. 0.89

  Alignments for each domain:
  == domain 1    score: 22.6 bits;  conditional E-value: 2.3e-07
   TIGR00960  12 kgaaelaldnvtvkiekGelvflvGhsGaGkstllklilgi..ekpsaGkirvsg 64 
                 + + ++ l++v + + +Ge+  ++G+ G+Gkst+ k+++g    + + G++ + g
  MMETSP1137-20121227|9848_1  98 QVGDKPILKGVDLTVRRGEVHAIMGPNGSGKSTFSKVLVGHpaYEVTGGEVNYRG 152
                 5678999*******************************98621456778887766 PP

  == domain 2    score: 23.2 bits;  conditional E-value: 1.5e-07
   TIGR00960 137 vqlsgGeqqrvaiaravvnkPallladePtgnlddelsrdilelleevnraGttvlvathdenlveskrkr 207
                   +sgGe++r  i + v+ +P+l + de  + ld +  + +   ++ ++  G ++++ th + l++  +  
  MMETSP1137-20121227|9848_1 233 SGFSGGEKKRNEILQMVLLDPELAILDETDSGLDIDALKTVAAGVNAFRSEGNAIILITHYQRLLDYIKPD 303
                 568*************************************************************9976655 PP

>> TIGR00968  3a0106s01: sulfate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.7   0.0   3.5e-14   2.4e-12       3     216 ..      92     320 ..      90     333 .. 0.77

  Alignments for each domain:
  == domain 1    score: 44.7 bits;  conditional E-value: 3.5e-14
   TIGR00968   3 ianvskrfGdfqalddvdlevktGslvallGpsGsGkstllrviaGle..kpdsGrilleGrdv.trvkvrdreiGfvfqhyalfkhl.tvrdniafGleir.........kkdkakikakveellelvqle.k.lgdrypsqlsGGqrqrvalaralavepqvllldepfgaldakvrkelrawlrklhdevkvttvfvthdqeealeva.drivvlekGkieqvgsae 216
                 ++ ++ + Gd  +l+ vdl+v+ G++ a++Gp GsGkst+ +v+ G    + + G++  +G++   +++ ++r    vf  +     +  v +n  + l ++           d  +    + e l+ v ++ + l+    s +sGG+++r  + + + ++p++ +lde  + ld    k + a +  +  e + + +++th q     +  d + v+ +Gki + g +e
  MMETSP1137-20121227|9848_1  92 VTGLEAQVGDKPILKGVDLTVRRGEVHAIMGPNGSGKSTFSKVLVGHPayEVTGGEVNYRGTEQlLELEPEERAQQGVFLAFQYPVEIpGVANNDFLRLAVNkrrgalglpEYDPLEFFGVLGEKLQAVSMNpDfLSRDVNSGFSGGEKKRNEILQMVLLDPELAILDETDSGLDIDALKTVAAGVNAFRSEGN-AIILITHYQRLLDYIKpDFVHVMAEGKIVRSGGPE 320
                 56677899**************************************862256789******9752678888887666665554433331455555556666622333333345556666667777888877533255667789*********************************************999976.57999**98876655437788*******9999886 PP

>> TIGR01193  bacteriocin_ABC: ABC-type bacteriocin transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.4   0.0   2.7e-14   1.9e-12     487     701 ..     102     330 ..      76     333 .. 0.76

  Alignments for each domain:
  == domain 1    score: 44.4 bits;  conditional E-value: 2.7e-14
   TIGR01193 487 sevledislkikknekitlvGlsGsGkstlakllvkf..fqaesGeillngk.slkdidkhelrqlinylP.qePfifsGsilenll...lgakenvsqeeikkaveiaei.kddieklplGyqtelseeassisgGqkqrlalarallsdskvlildestsnldlltekkive..nllklkdktiifvah..rlsvakksdkiivldeGkiieqG..shkellkenGf 701
                 +++l+ ++l++++ e+ +++G  GsGkst+ k+lv+   ++ + Ge++  g+ +l +++ +e  q   +l  q P+   G   +++l   ++ ++++      + +e+  +  + ++ +++  +    + +s  sgG k+r  + + +l d ++ ilde+ s ld+   k +    n ++ +  +ii+++h  rl    k d + v+ eGki+ +G  +  + l+++G+
  MMETSP1137-20121227|9848_1 102 KPILKGVDLTVRRGEVHAIMGPNGSGKSTFSKVLVGHpaYEVTGGEVNYRGTeQLLELEPEERAQQGVFLAfQYPVEIPGVANNDFLrlaVNKRRGALGLPEYDPLEFFGVlGEKLQAVSMNPDFLSRDVNSGFSGGEKKRNEILQMVLLDPELAILDETDSGLDIDALKTVAAgvNAFRSEGNAIILITHyqRLLDYIKPDFVHVMAEGKIVRSGgpEIAKELEAEGY 330
                 679********************************96559*******98765279999988877766666438899999977665442113344444333334556655541566777777766544556889********************************98888887622455667789******555555668999***********993334455666665 PP

>> TIGR03005  ectoine_ehuA: ectoine/hydroxyectoine ABC transporter, ATP-binding protein EhuA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.0   9.3e-07   6.5e-05      11      49 ..     100     138 ..      90     164 .. 0.81
   2 !   23.4   0.0   8.9e-08   6.2e-06     144     232 ..     232     320 ..     216     336 .. 0.87

  Alignments for each domain:
  == domain 1    score: 20.1 bits;  conditional E-value: 9.3e-07
   TIGR03005  11 geltvldglelevaaGekvaliGpsGsGkstilrilmtl 49 
                 g+  +l+g++l+v +Ge  a++Gp GsGkst  ++l+  
  MMETSP1137-20121227|9848_1 100 GDKPILKGVDLTVRRGEVHAIMGPNGSGKSTFSKVLVGH 138
                 566799*****************************9864 PP

  == domain 2    score: 23.4 bits;  conditional E-value: 8.9e-08
   TIGR03005 144 paqlsGGqkqrvaiaralalrpkvllfdevtsaldpelveevlnvlrrlasetdltmllvthemgfaref.adrvlffdkGkiveeGkpd 232
                  + +sGG+k+r  i + + l p + ++de+ s ld + ++ v + +  + se +  ++l+th  ++   +  d v  +  Gkiv  G p+
  MMETSP1137-20121227|9848_1 232 NSGFSGGEKKRNEILQMVLLDPELAILDETDSGLDIDALKTVAAGVNAFRSEGNA-IILITHYQRLLDYIkPDFVHVMAEGKIVRSGGPE 320
                 5778************************************************986.567788877766652699*************997 PP

>> TIGR01846  type_I_sec_HlyB: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.1   3.8e-06   0.00027     470     503 ..     102     135 ..      80     148 .. 0.92
   2 !   25.7   0.0     1e-08   7.2e-07     593     676 ..     234     320 ..     228     334 .. 0.89

  Alignments for each domain:
  == domain 1    score: 17.2 bits;  conditional E-value: 3.8e-06
   TIGR01846 470 pevlsnlsldikaGeviGivGpsGsGkstltkll 503
                  ++l+ + l ++ Gev  i+Gp GsGkst++k+l
  MMETSP1137-20121227|9848_1 102 KPILKGVDLTVRRGEVHAIMGPNGSGKSTFSKVL 135
                 5799***************************987 PP

  == domain 2    score: 25.7 bits;  conditional E-value: 1e-08
   TIGR01846 593 alsGGqrqrialaralvanPrilildeatsaldyeseavimrnlrei.ckgrtviiiah..rlstvraadrilvlekGkivesGkhe 676
                  +sGG ++r  + + ++ +P + ilde+ s ld ++ +++   +++  ++g ++i i+h  rl    + d + v+ +Gkiv sG  e
  MMETSP1137-20121227|9848_1 234 GFSGGEKKRNEILQMVLLDPELAILDETDSGLDIDALKTVAAGVNAFrSEGNAIILITHyqRLLDYIKPDFVHVMAEGKIVRSGGPE 320
                 68******************************************9974789*******97778788889**************9755 PP

>> TIGR02315  ABC_phnC: phosphonate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.1   0.0   1.9e-09   1.3e-07       1      62 [.      89     151 ..      89     175 .. 0.82
   2 !   13.9   0.0   8.3e-05    0.0058     144     230 ..     233     319 ..     213     328 .. 0.77

  Alignments for each domain:
  == domain 1    score: 29.1 bits;  conditional E-value: 1.9e-09
   TIGR02315   1 llevenlskvypngkqalknvnleikkGelvaviGlsGaGkstllrsinr..lveissgsille 62 
                 ll+v+ l+ + + +k +lk v+l++++Ge+ a++G+ G+Gkst+ + + +    e + g++  +
  MMETSP1137-20121227|9848_1  89 LLKVTGLEAQVG-DKPILKGVDLTVRRGEVHAIMGPNGSGKSTFSKVLVGhpAYEVTGGEVNYR 151
                 588999999999.99*****************************99886511344566666555 PP

  == domain 2    score: 13.9 bits;  conditional E-value: 8.3e-05
   TIGR02315 144 dqLsGGqqqRvaiaRalaqqpklilaDEPiasLDpksskqvmdllkrinkekgitvivnlHqvdlakkyadrivglkageivfdgas 230
                 +  sGG+++R  i   ++ +p+l + DE  + LD  + k+v   +     e + +++++ +q  l     d +  +++g+iv  g +
  MMETSP1137-20121227|9848_1 233 SGFSGGEKKRNEILQMVLLDPELAILDETDSGLDIDALKTVAAGVNAFRSEGNAIILITHYQRLLDYIKPDFVHVMAEGKIVRSGGP 319
                 568*******************************************99999998888886653333333345555677777766665 PP

>> TIGR03265  PhnT2: putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.5   0.0   2.9e-13     2e-11       3     220 ..      88     320 ..      86     328 .. 0.80

  Alignments for each domain:
  == domain 1    score: 41.5 bits;  conditional E-value: 2.9e-13
   TIGR03265   3 eylsieeiekefeaftalkdislsvkkgelvclLGPsGCGkttLLriiaGLe..kqdaGaillgg.rditrlppqkrdy.G..ivfqsYaLfPnltvaeniayGLknkk.......lkreevaerveelLelvglsg..seekyPgqlsGGqqqrvaLaralalsPglLLLDePlsaLDakvrekLreelkklqrklgvttimvthdqeea.lslaDrivvmnkgkieqvgtPe 220
                 e l+++ +e ++++  +lk ++l+v++ge+ +++GP G Gk+t+ +++ G    + + G++   g +++ +l p++r   G  + fq  +  P ++ ++ +   +++++       ++  e    + e L+ v ++    ++   + +sGG ++r  + + + l P+l +LDe  s LD    + +   +++++ + g + i++th q        D + vm +gki + g Pe
  MMETSP1137-20121227|9848_1  88 ELLKVTGLEAQVGDKPILKGVDLTVRRGEVHAIMGPNGSGKSTFSKVLVGHPayEVTGGEVNYRGtEQLLELEPEERAQqGvfLAFQYPVEIPGVANNDFLRLAVNKRRgalglpeYDPLEFFGVLGEKLQAVSMNPdfLSRDVNSGFSGGEKKRNEILQMVLLDPELAILDETDSGLDIDALKTVAAGVNAFRSE-GNAIILITHYQRLLdYIKPDFVHVMAEGKIVRSGGPE 320
                 6789999*******************************************8622578999977662578899999886514223477777889888888888777776622111112344555667788888888652247889999*******************************************999776.6789*******86514457999************996 PP

>> TIGR03258  PhnT: 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.4   0.0   2.8e-13   1.9e-11      10     235 ..      91     330 ..      82     335 .. 0.77

  Alignments for each domain:
  == domain 1    score: 41.4 bits;  conditional E-value: 2.8e-13
   TIGR03258  10 vleslrvaygarvvlddlsleieaGellallGksGsGkttllravaGf..vkadGGrllvadr.dlthlppykr...nlallvqnyalfphlkveenvafGlrarkqskal.......iaervadalklvqls.da.aarlpaqlsGGqqqrvalaralvvrpdvllldeplsaldaqlrasvveelkalhrelpeltvlyvthdrd.ealvladkillmkeGslialGetralydapadrf 235
                 ++  l+ + g + +l+ + l++  Ge+ a++G+ GsGk+t  +++ G    +  GG +   ++ +l  l p  r   ++ l +q     p +  ++ + + +  r+ +  l           + + l+ v ++ d+ +  + + +sGG ++r  + + + ++p++ +lde  s ld +  ++v   ++a+  e    +++ +th +     +  d + +m eG++++ G ++   +  a+++
  MMETSP1137-20121227|9848_1  91 KVTGLEAQVGDKPILKGVDLTVRRGEVHAIMGPNGSGKSTFSKVLVGHpaYEVTGGEVNYRGTeQLLELEPEERaqqGVFLAFQYPVEIPGVANNDFLRLAVNKRRGALGLpeydpleFFGVLGEKLQAVSMNpDFlSRDVNSGFSGGEKKRNEILQMVLLDPELAILDETDSGLDIDALKTVAAGVNAFRSEG--NAIILITHYQRlLDYIKPDFVHVMAEGKIVRSGGPEIAKELEAEGY 330
                 5666788889999**********************************83356789**998776268999999882223455666666788777777766666666643332111111133457899*****9745525668899*********************************************98774..356777886651567889***************9987766666665 PP

>> TIGR02982  heterocyst_DevA: ABC exporter ATP-binding subunit, DevA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.7   0.0   1.2e-12   8.2e-11      18     219 ..     102     313 ..      90     314 .. 0.76

  Alignments for each domain:
  == domain 1    score: 39.7 bits;  conditional E-value: 1.2e-12
   TIGR02982  18 kqvlfdinleiepgeiviltGpsGsGkttlltligg..lrsvqeGelkvlgke.lkgasekelvqvrrkiGyifqahnllesltaeqnvrmalelkek......lsakeakakaeelleavgleerl..dykpedlsgGqkqrvaiaralvarPklvladePtaaldkksgrevvellqklareqgttillvthdnrildva..drivkmedGkl 219
                 k +l+ ++l+++ ge+  + Gp GsGk t+  ++ g    +v  Ge++  g+e l +++ +e+ q  + + + fq    +  ++ ++ +r+a++ ++       +   e      e l+av ++  +      + +sgG k+r  i + +   P+l + de  + ld ++ ++v   ++   r +g +i+l+th +r+ld    d +  m +Gk+
  MMETSP1137-20121227|9848_1 102 KPILKGVDLTVRRGEVHAIMGPNGSGKSTFSKVLVGhpAYEVTGGEVNYRGTEqLLELEPEERAQ--QGVFLAFQYPVEIPGVANNDFLRLAVNKRRGalglpeYDPLEFFGVLGEKLQAVSMNPDFlsRDVNSGFSGGEKKRNEILQMVLLDPELAILDETDSGLDIDALKTVAAGVNA-FRSEGNAIILITHYQRLLDYIkpDFVHVMAEGKI 313
                 779**************************9876655124678999**999977566666666554..566677887777777777777777776655421100035555666678899999999866224456789*********************************99999888865.58899*************9642244555666665 PP

>> TIGR03522  GldA_ABC_ATP: gliding motility-associated ABC transporter ATP-binding subunit GldA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.6   0.0   9.7e-08   6.8e-06       4      64 ..      91     153 ..      89     169 .. 0.82
   2 !   17.2   0.0   8.4e-06   0.00058     134     213 ..     235     316 ..     219     329 .. 0.86

  Alignments for each domain:
  == domain 1    score: 23.6 bits;  conditional E-value: 9.7e-08
   TIGR03522   4 evsdlsklygkqkaldevsfeaekGeivGflGPnGaGkstlmkiltgy..lkadsGsvavage 64 
                 +v+ l  + g + +l+ v +++++Ge+   +GPnG+Gkst  k+l g+   + ++G v+  g+
  MMETSP1137-20121227|9848_1  91 KVTGLEAQVGDKPILKGVDLTVRRGEVHAIMGPNGSGKSTFSKVLVGHpaYEVTGGEVNYRGT 153
                 6777888899999********************************997223456666666655 PP

  == domain 2    score: 17.2 bits;  conditional E-value: 8.4e-06
   TIGR03522 134 lskGyrqrvGlakallhdPkvlildePttGldPnqlveirevikei.akdktvilsthimqevealc.drviiinkGkivad 213
                 +s G ++r  + + +l dP++ ilde  +Gld + l  + + ++   ++  ++il th  + ++ +  d v ++ +Gkiv +
  MMETSP1137-20121227|9848_1 235 FSGGEKKRNEILQMVLLDPELAILDETDSGLDIDALKTVAAGVNAFrSEGNAIILITHYQRLLDYIKpDFVHVMAEGKIVRS 316
                 6889999*******************************99988777256789*******99999997255778999**9976 PP

>> TIGR00956  3a01205: pleiotropic drug resistance family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.6   0.0   3.9e-13   2.7e-11      61     300 ..      89     324 ..      57     332 .. 0.81

  Alignments for each domain:
  == domain 1    score: 39.6 bits;  conditional E-value: 3.9e-13
   TIGR00956  61 ilrklkkekeskkfdilkdvdglikpgelvvvLGrPgsGcstlLksiasktegfkkgkeskitYdglsk.eeikkhyrgd..vvYsaetdvHlpsltvketLdfaarlktpqnRvkgvsreeyakkladvvlaiyGLshtkntkvGndlvRGvsGGerkRvsiaevlvakakiqcwDnatrGLDsatalefvkalktsaeilkatalvaiyqasqdayelFdkvvvlyeGkqiyfGkadkake 300
                  l+    e +   + ilk vd  ++ ge+  ++G+ gsG+st+ k++ ++   +++ + ++++Y g ++  e++++ r++  v  + +  v +p ++ ++ L +a++ +  +    + +  e+   l +   a+   s  +      d+  G sGGe+kR  i  +++ +++++++D++  GLD      ++  + +  +  +a  l++ yq   d y   d v v+ eGk++  G  + ake
  MMETSP1137-20121227|9848_1  89 LLKVTGLEAQVGDKPILKGVDLTVRRGEVHAIMGPNGSGKSTFSKVLVGHP-AYEV-TGGEVNYRGTEQlLELEPEERAQqgVFLAFQYPVEIPGVANNDFLRLAVNKRRGALGLPEYDPLEFFGVLGEKLQAV---S-MNPDFLSRDVNSGFSGGEKKRNEILQMVLLDPELAILDETDSGLDIDALKTVAAGVNAFRSEGNAIILITHYQRLLD-YIKPDFVHVMAEGKIVRSGGPEIAKE 324
                 455556677888899*******************************99875.5777.79*******987358888877653255566999***************99999888888888888877666655544...2.333456789999*********************************876666666799999999**********9988.66689***********9998777775 PP

>> TIGR01186  proV: glycine betaine/L-proline transport ATP binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.8   0.1   3.8e-12   2.6e-10       4     215 ..     100     320 ..      97     331 .. 0.81

  Alignments for each domain:
  == domain 1    score: 37.8 bits;  conditional E-value: 3.8e-12
   TIGR01186   4 GlklgvndvdleieeGeiiviiGlsGsGkstlvrll..nrliePtaGkilidG.ediaeisdaelrevrrkkiamviqkialfPhmtildnislgle....llkideqerke...kalealklvdl.eeyedry.PdelsGGmqqrvGlaralaaePdlllmdeafsaldPlirdelqdelvklqkklqktivfithd..ldealrlgdrivilkaGeivqvGtPd 215
                 G k  ++ vdl +  Ge+  i+G+ GsGkst  ++l      e t G++   G e++ e++++e     ++ + + +q    +P ++  d + l+++     l+++e +  e      e l+ v + +++  r     +sGG ++r  +++ +  +P+l ++de+ s ld    + +   +  ++     +i++ith   l + ++  d + ++ +G+iv+ G P+
  MMETSP1137-20121227|9848_1 100 GDKPILKGVDLTVRRGEVHAIMGPNGSGKSTFSKVLvgHPAYEVTGGEVNYRGtEQLLELEPEER---AQQGVFLAFQYPVEIPGVANNDFLRLAVNkrrgALGLPEYDPLEffgVLGEKLQAVSMnPDFLSRDvNSGFSGGEKKRNEILQMVLLDPELAILDETDSGLDIDALKTVAAGVNAFR-SEGNAIILITHYqrLLDYIK-PDFVHVMAEGKIVRSGGPE 320
                 66777899**************************99333579*******8887357888888876...78899999**99999999888888776652222346666665552215679*******99**987615679*******************************999999988877766.567899*****633555666.799**************97 PP

>> TIGR03771  anch_rpt_ABC: anchored repeat-type ABC transporter, ATP-binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.9   0.0   5.5e-13   3.8e-11       2     197 ..     111     320 ..     110     332 .. 0.80

  Alignments for each domain:
  == domain 1    score: 40.9 bits;  conditional E-value: 5.5e-13
   TIGR03771   2 svdkGellgllGpnGaGkttllrailgl..ikvakGsvkvagkssrkgrreiGyvpqrhefawdfpidveqt........vlsGragliGllrrpkkadfaavadalervklt.eladrpv.GelsGGqrqrvlvaralavkpslllldepftGldlpsqellvelfeelagegtailmtth..dlaeavatcdrvvllngrvvadgapd 197
                 +v +Ge+ +++GpnG+Gk+t+ + ++g    +v+ G+v+  g  +           q   +a+++p+++ ++         ++ r g +Gl      + f    + l+ v+++ ++ +r v   +sGG+++r  + + + ++p+l +lde  +Gld+ + ++++  ++++ +eg+ai++ th   l + ++     v+ +g++v  g p+
  MMETSP1137-20121227|9848_1 111 TVRRGEVHAIMGPNGSGKSTFSKVLVGHpaYEVTGGEVNYRGTEQLLELEPEERAQQGVFLAFQYPVEIPGVanndflrlAVNKRRGALGLPEYDPLEFFGVLGEKLQAVSMNpDFLSRDVnSGFSGGEKKRNEILQMVLLDPELAILDETDSGLDIDALKTVAAGVNAFRSEGNAIILITHyqRLLDYIKPDFVHVMAEGKIVRSGGPE 320
                 6899*********************997225678999999998666666666667777778******987652222222246788888888888888899999*********7567777772569********************************************************93335566655555566677777777775 PP

>> TIGR01277  thiQ: thiamine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.0   0.0   7.9e-12   5.5e-10      17     208 ..     108     314 ..      90     318 .. 0.78

  Alignments for each domain:
  == domain 1    score: 37.0 bits;  conditional E-value: 7.9e-12
   TIGR01277  17 fdlsveaGervailGesGaGkstllnliaGf..lepasGeikvndkdh.trsapyerp...vsmlfq........ennlfahltvrqni.glGl..kpglklnavqkekvedvarqvGiadylerlpee.lsGGqrqrvalarclvrekpillldepfsaldpklreemlalvkkladekkltlllvthslsdaaaia.sqvvvvedGkik 208
                  dl+v +Ge  ai+G+ G+Gkst+ +++ G    e + Ge++  + ++ +++ p er    v + fq         nn f  l+v++   +lGl     l +  v  ek+++v+ +    d+l r  ++ +sGG+++r  + + ++ +  + +lde  s ld    + + a v+   +e + +++l+th    +  i  + v v+++Gki 
  MMETSP1137-20121227|9848_1 108 VDLTVRRGEVHAIMGPNGSGKSTFSKVLVGHpaYEVTGGEVNYRGTEQlLELEPEERAqqgVFLAFQypveipgvANNDFLRLAVNKRRgALGLpeYDPLEFFGVLGEKLQAVSMN---PDFLSRDVNSgFSGGEKKRNEILQMVLLDPELAILDETDSGLDIDALKTVAAGVNAFRSEGN-AIILITHYQRLLDYIKpDFVHVMAEGKIV 314
                 79*************************99973345678999998876526889988852225666775554444459********8754257772245789999999***998876...689999655439*************999*9*************9999999999999888765.67888998877766652556788899985 PP

>> TIGR01192  chvA: glucan exporter ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.4   0.0    0.0023      0.16     353     396 ..     107     152 ..     100     159 .. 0.80
   2 !   25.0   0.0   2.1e-08   1.4e-06     470     554 ..     233     320 ..     219     336 .. 0.85

  Alignments for each domain:
  == domain 1    score: 8.4 bits;  conditional E-value: 0.0023
   TIGR01192 353 dvsfeakagqtvaivgptgagkttlinll..qrvydpksgqilidg 396
                  v ++++ g+  ai+gp g+gk+t+  +l     y+ + g++   g
  MMETSP1137-20121227|9848_1 107 GVDLTVRRGEVHAIMGPNGSGKSTFSKVLvgHPAYEVTGGEVNYRG 152
                 68899*******************9888722356777777776666 PP

  == domain 2    score: 25.0 bits;  conditional E-value: 2.1e-08
   TIGR01192 470 nrlsggerqrlaiarailknapilvldeatsaldvetearvkdaidalrknrttfi.iah..rlstvreadlvlfldqgrliekgsfd 554
                 + +sgge++r  i + +l +  + +lde+ s ld+++   v + ++a+r +  ++i i+h  rl    + d+v  + +g+++  g+ +
  MMETSP1137-20121227|9848_1 233 SGFSGGEKKRNEILQMVLLDPELAILDETDSGLDIDALKTVAAGVNAFRSEGNAIIlITHyqRLLDYIKPDFVHVMAEGKIVRSGGPE 320
                 668**********************************************998776526776688888899*************99854 PP

>> TIGR02323  CP_lyasePhnK: phosphonate C-P lyase system protein PhnK
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.5   0.0   1.8e-10   1.3e-08       2     221 ..      88     318 ..      87     333 .. 0.73

  Alignments for each domain:
  == domain 1    score: 32.5 bits;  conditional E-value: 1.8e-10
   TIGR02323   2 pllevselsksygskkgcr.vsf.lypGevlgivGesGsGkstllkalaarll..adaGevtyesrsrelellalseaerrlllrtewGlvhqnpr...GlrmevsaGanigerllavgarhyGkiraaak...wlekveidaari...kpaafsGGmqqrlqiarnlvtrprlvfm.eptGGl.vsvqarllllrglvrelglaviivthla.va.rllaqrllvmkqGrvvesGl 221
                  ll+v++l  + g+k  ++ v++ ++ Gev +i+G  GsGkst+ k l ++ +   + Gev+y+  ++ lel     a++ ++l  ++           G+  +      +++r  a+g   y  +         l+ v ++ + +     + fsGG ++r +i + ++  p l ++ e   Gl +     +    +  r  g a+i++th   +   +  + + vm +G++v sG 
  MMETSP1137-20121227|9848_1  88 ELLKVTGLEAQVGDKPILKgVDLtVRRGEVHAIMGPNGSGKSTFSKVLVGHPAyeVTGGEVNYRGTEQLLELEPEERAQQGVFLAFQYP------VeipGVANNDFLRLAVNKRRGALGLPEYDPLEFFGVlgeKLQAVSMNPDFLsrdVNSGFSGGEKKRNEILQMVLLDPELAILdETDSGLdIDALKTVAAGVNAFRSEGNAIILITHYQrLLdYIKPDFVHVMAEGKIVRSGG 318
                 699**********999999999999***********************99865115578999988887666655555555555544444......3223666666666677788888888888776654332237888888765443338999*********************999455566644444444455556788999*******54133134457899********9995 PP

>> TIGR02142  modC_ABC: molybdate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.7   0.0    0.0014     0.099      16      48 ..     108     140 ..      94     176 .. 0.71
   2 !   22.0   0.0   2.6e-07   1.8e-05     124     215 ..     226     318 ..     214     332 .. 0.84

  Alignments for each domain:
  == domain 1    score: 9.7 bits;  conditional E-value: 0.0014
   TIGR02142  16 vdlelpgkgvtalFGrsGsGktslirliaGLtr 48 
                 vdl++   +v a+ G  GsGk+++ +++ G   
  MMETSP1137-20121227|9848_1 108 VDLTVRRGEVHAIMGPNGSGKSTFSKVLVGHPA 140
                 78888888*****************99998543 PP

  == domain 2    score: 22.0 bits;  conditional E-value: 2.6e-07
   TIGR02142 124 LleRlpgk.LsGGekqRvaigRAlLssPeLLlmDePLaaLDekrkkeilPyLerlsaelkiPilyvsHsldevarla.drvvvledGrvkaagk 215
                  l+R +++  sGGek+R  i   +L +PeL ++De  + LD    k +   ++  ++e +  i+++ H    +  +  d v v+ +G++   g 
  MMETSP1137-20121227|9848_1 226 FLSRDVNSgFSGGEKKRNEILQMVLLDPELAILDETDSGLDIDALKTVAAGVNAFRSEGN-AIILITHYQRLLDYIKpDFVHVMAEGKIVRSGG 318
                 4666665439**************************************999999999977.588899998888887538888999999876664 PP

>> TIGR01187  potA: polyamine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.9   0.0     9e-10   6.2e-08       1     186 [.     120     320 ..     120     331 .. 0.75

  Alignments for each domain:
  == domain 1    score: 29.9 bits;  conditional E-value: 9e-10
   TIGR01187   1 lLGpsGsGkttlLrllaGle..eldsGkilldg.edvtevpaekrsvnvvfqsyaL...fPhmtveen..vafgLkmrkvpkaeike.....rvkeaLelvqle.efakrkp.sqlsGGqrqrvalaravvkkPkiLLlDeplsaLDkkLrdqmqlelkalqeklGitvvlvthDqee.altmsdriavlrkGkiaqigepe 186
                 ++Gp GsGk+t  ++l G    e+  G++   g e++ e  +e+r  + vf ++      P ++ ++   +a   +   ++  e ++        e L+ v ++ +f +r + s +sGG ++r  + + v   P++ +lDe+ s LD    + +   ++a++ + G +++l+th q+       d + v+ +Gki++ g pe
  MMETSP1137-20121227|9848_1 120 IMGPNGSGKSTFSKVLVGHPayEVTGGEVNYRGtEQLLELEPEERAQQGVFLAFQYpveIPGVANNDFlrLAVNKRRGALGLPEYDPleffgVLGEKLQAVSMNpDFLSRDVnSGFSGGEKKRNEILQMVLLDPELAILDETDSGLDIDALKTVAAGVNAFRSE-GNAIILITHYQRLlDYIKPDFVHVMAEGKIVRSGGPE 320
                 68****************85226788***997725699999*999877777665441115555444431123332322233334433212216789*******856777765267*******************************************998766.9**********962456789************99997 PP

>> TIGR01184  ntrCD: nitrate ABC transporter, ATP-binding proteins C and D
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.7   0.0   3.3e-10   2.3e-08       1     173 [.     105     292 ..     105     320 .. 0.76

  Alignments for each domain:
  == domain 1    score: 31.7 bits;  conditional E-value: 3.3e-10
   TIGR01184   1 lkdvdleikkgefislighsgcgkstllnliagle..kptsgavilegk.eitepgpdr......mvvfqnysllpwltvrenialavdavlrdlskserr.....eiveehielvglrea..adkrpeqlsggmkqrvaiaralsirpklllldepfgaldaltreelqekllkiveearvtvlmvth 173
                 lk+vdl++++ge  +++g  g gkst+  ++ g    + t g v   g  ++ e  p+       ++ fq    +p ++ ++ + lav++ +  l   e +      ++ e+++ v+++    +    + +sgg k+r  i + + + p+l +lde    ld  + + +    ++ ++ +  +++++th
  MMETSP1137-20121227|9848_1 105 LKGVDLTVRRGEVHAIMGPNGSGKSTFSKVLVGHPayEVTGGEVNYRGTeQLLELEPEEraqqgvFLAFQYPVEIPGVANNDFLRLAVNKRRGALGLPEYDpleffGVLGEKLQAVSMNPDflSRDVNSGFSGGEKKRNEILQMVLLDPELAILDETDSGLDIDALKTVAA-GVNAFRSEGNAIILITH 292
                 799****************************99752256889999999625666666531222224567777889**************98877665554422222799********98752144556789**************************99998655555444.34555556666777777 PP

>> TIGR02314  ABC_MetN: D-methionine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.0   0.0    0.0019      0.13      20      49 ..     104     133 ..      88     167 .. 0.85
   2 !   17.7   0.0   4.3e-06    0.0003     139     223 ..     233     317 ..     219     323 .. 0.89

  Alignments for each domain:
  == domain 1    score: 9.0 bits;  conditional E-value: 0.0019
   TIGR02314  20 aldnvslfvpkgqifgvigasgagkstlir 49 
                  l+ v+l v +g+++ ++g  g+gkst+ +
  MMETSP1137-20121227|9848_1 104 ILKGVDLTVRRGEVHAIMGPNGSGKSTFSK 133
                 4899***********************866 PP

  == domain 2    score: 17.7 bits;  conditional E-value: 4.3e-06
   TIGR02314 139 snlsggqkqrvaiaralasepkvllcdeatsaldpattqsilellkeinrrlgltillithemdvvkric.devavidkgeliekg 223
                 s +sgg+k+r  i + +  +p + + de+ s ld  + +++   +    r  g +i+lith   ++  i  d v v+ +g+++  g
  MMETSP1137-20121227|9848_1 233 SGFSGGEKKRNEILQMVLLDPELAILDETDSGLDIDALKTVAAGVNA-FRSEGNAIILITHYQRLLDYIKpDFVHVMAEGKIVRSG 317
                 779********************************999999887755.5888999*******999999854899*******99765 PP

>> TIGR01257  rim_protein: rim ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.0   2.9e-07     2e-05    1952    2129 ..     102     293 ..      71     298 .. 0.74
   2 !   12.3   0.0   4.1e-05    0.0028    1061    1154 ..     234     329 ..     227     335 .. 0.87

  Alignments for each domain:
  == domain 1    score: 19.4 bits;  conditional E-value: 2.9e-07
   TIGR01257 1952 spavdrlcvgvrpgecfgllgvngagktttfkmltgdtt..vtsgdatvagksiltnis.d..vhqnmgycpqfdaiddlltgrehlylyarlr....gvpa.eeiekvanwsikslglslyadrla....gtysggnkrklstaialigcpplvlldepttgmdpqarrmlwntivsiiregravvltshs 2129
                   p +  + + vr ge+  ++g ng+gk+t  k+l g  +  vt g+    g   l ++  +   +q +  + q+      ++  + l l    r    g+p  + +e     + k   +s+  d l+      +sgg+k++      ++  p l +lde  +g+d +a + +   + +   eg a++l +h 
  MMETSP1137-20121227|9848_1  102 KPILKGVDLTVRRGEVHAIMGPNGSGKSTFSKVLVGHPAyeVTGGEVNYRGTEQLLELEpEerAQQGVFLAFQYPVEIPGVANNDFLRLAVNKRrgalGLPEyDPLEFFGVLGEKLQAVSMNPDFLSrdvnSGFSGGEKKRNEILQMVLLDPELAILDETDSGLDIDALKTVAAGVNAFRSEGNAIILITHY 293 
                  5666777789**************************875449*********99888875231133444445555555555778888888654433333455423355555555566666777776642222679***99999888888889*************************************9995 PP

  == domain 2    score: 12.3 bits;  conditional E-value: 4.1e-05
   TIGR01257 1061 dlsgglqrklsvaiafvgdakvvvldeptsgvdpysrrsiwdlllkyrs.grtiimsthhmdeadll.gdriaiisqgrlycsgtplflkncfgtg 1154
                   +sgg +++  +   ++ d  + +lde  sg+d  + +++   +  +rs g +ii+ th+    d +  d + ++++g++  sg p + k+    g
  MMETSP1137-20121227|9848_1  234 GFSGGEKKRNEILQMVLLDPELAILDETDSGLDIDALKTVAAGVNAFRSeGNAIILITHYQRLLDYIkPDFVHVMAEGKIVRSGGPEIAKELEAEG 329 
                  578999988888888999*****************************987899*******999996527999**************9888765555 PP

>> TIGR01194  cyc_pep_trnsptr: cyclic peptide transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.0   1.5e-06    0.0001     357     397 ..     105     147 ..      91     156 .. 0.81
   2 ?    3.4   0.0     0.072         5     470     549 ..     235     315 ..     219     318 .. 0.79

  Alignments for each domain:
  == domain 1    score: 18.8 bits;  conditional E-value: 1.5e-06
   TIGR01194 357 lGpidlriasGelvyivGenGcGkstliklllGl..yipqeGe 397
                 l  +dl++ +Ge+  i+G nG Gkst+ k+l+G   y    Ge
  MMETSP1137-20121227|9848_1 105 LKGVDLTVRRGEVHAIMGPNGSGKSTFSKVLVGHpaYEVTGGE 147
                 6679****************************94225555555 PP

  == domain 2    score: 3.4 bits;  conditional E-value: 0.072
   TIGR01194 470 lstGqrkrlalvnayleerpvllldewaadqdp.afkrvfyeellpdlkrrGktilvishddryfela..drlikladGkvvk 549
                 +s G++kr  ++   l +  + +lde  +  d  a+k v     +  ++ +G +i++i+h +r ++    d +  +a+Gk+v+
  MMETSP1137-20121227|9848_1 235 FSGGEKKRNEILQMVLLDPELAILDETDSGLDIdALKTVA--AGVNAFRSEGNAIILITHYQRLLDYIkpDFVHVMAEGKIVR 315
                 6889999999999999999999999998888751555553..44678999************998864337788889999996 PP

>> TIGR00954  3a01203: peroxysomal long chain fatty acyl transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.4   0.0   0.00024     0.017     470     501 ..     106     137 ..      97     155 .. 0.86
   2 !   10.7   0.0   0.00039     0.027     583     645 ..     234     299 ..     227     311 .. 0.83

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 0.00024
   TIGR00954 470 eeLsfevksGnhlLiiGPnGcGKsslfRilge 501
                 + + + v+ G+   i+GPnG GKs + ++l +
  MMETSP1137-20121227|9848_1 106 KGVDLTVRRGEVHAIMGPNGSGKSTFSKVLVG 137
                 55678999******************999975 PP

  == domain 2    score: 10.7 bits;  conditional E-value: 0.00039
   TIGR00954 583 vLsgGekqRiamARlfyHkPkfavLDEctsAvsvdvEdkl...yelakevgitllsvshrksLwky 645
                   sgGek+R  +  +    P+ a+LDE+ s + +d  + +    ++ ++ g +++ ++h + L+ y
  MMETSP1137-20121227|9848_1 234 GFSGGEKKRNEILQMVLLDPELAILDETDSGLDIDALKTVaagVNAFRSEGNAIILITHYQRLLDY 299
                 579*******************************98877733346677778888888888888777 PP

>> TIGR00630  uvra: excinuclease ABC subunit A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.1   0.0    0.0019      0.13     620     654 ..     102     135 ..      68     161 .. 0.80
   2 !   12.1   0.0   0.00012    0.0083     829     891 ..     235     294 ..     225     321 .. 0.80

  Alignments for each domain:
  == domain 1    score: 8.1 bits;  conditional E-value: 0.0019
   TIGR00630 620 ennlkdidvsiplglltvitGvsgsGkstLindiL 654
                 +  lk +d++++ g++ +i G+ gsGkst+  ++L
  MMETSP1137-20121227|9848_1 102 KPILKGVDLTVRRGEVHAIMGPNGSGKSTFS-KVL 135
                 45699***********************963.444 PP

  == domain 2    score: 12.1 bits;  conditional E-value: 0.00012
   TIGR00630 829 LsGGeaqrvkLakeLskrstgktlyilDePttGLhfdDikkLlevlqrlvdkGntvvviehnl 891
                 +sGGe +r      L+       l ilDe   GL +d +k +   ++ + ++Gn++++i h  
  MMETSP1137-20121227|9848_1 235 FSGGEKKRNE---ILQMVLLDPELAILDETDSGLDIDALKTVAAGVNAFRSEGNAIILITHYQ 294
                 6888888854...466666778899**********************************9963 PP

>> TIGR00957  MRP_assoc_pro: multi drug resistance-associated protein (MRP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.2   0.0    0.0011     0.076     649     687 ..     100     138 ..      78     157 .. 0.80
   2 !    7.2   0.0    0.0021      0.15     761     844 ..     235     318 ..     227     335 .. 0.84

  Alignments for each domain:
  == domain 1    score: 8.2 bits;  conditional E-value: 0.0011
   TIGR00957 649 depptlngltlsipegalvavvgqvgcgkssllsallae 687
                 ++ p l+g++l++ +g + a++g+ g gks++   l++ 
  MMETSP1137-20121227|9848_1 100 GDKPILKGVDLTVRRGEVHAIMGPNGSGKSTFSKVLVGH 138
                 67899*************************998888775 PP

  == domain 2    score: 7.2 bits;  conditional E-value: 0.0021
   TIGR00957 761 lsggqkqrvslaravysdadiyllddplsavdahvakhifekvigpkgllknktrilvthgisylpqv..dviivlsdgkisemgs 844
                 +sgg+k+r  + + v  d ++ +ld+  s +d    k +   v   +   ++++ il+th    l  +  d++ v+++gki   g 
  MMETSP1137-20121227|9848_1 235 FSGGEKKRNEILQMVLLDPELAILDETDSGLDIDALKTVAAGVNAFR--SEGNAIILITHYQRLLDYIkpDFVHVMAEGKIVRSGG 318
                 79*********************************999988776655..478899*****99888754449**********88774 PP

>> TIGR03415  ABC_choXWV_ATP: choline ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.0   7.5e-06   0.00052      33      91 ..      98     158 ..      83     170 .. 0.76
   2 ?   -1.3   0.0       2.6   1.8e+02     165     249 ..     235     319 ..     214     327 .. 0.56

  Alignments for each domain:
  == domain 1    score: 16.9 bits;  conditional E-value: 7.5e-06
   TIGR03415  33 ktGlvlgvadasldveeGeilvlmGlsGsGkssllravngln..pvsrGkvlvkdedkevd 91 
                 + G+    +++ l+v++Ge+  +mG  GsGks++ + + g     v+ G+v+ +  ++ ++
  MMETSP1137-20121227|9848_1  98 QVGDKPILKGVDLTVRRGEVHAIMGPNGSGKSTFSKVLVGHPayEVTGGEVNYRGTEQLLE 158
                 455555568899*********************9988777531156777777666666555 PP

  == domain 2    score: -1.3 bits;  conditional E-value: 2.6
   TIGR03415 165 lsGGmqqrvGlarafateadillmdePfsaldPliraklqdellelqkklkktivfvshd..ldealklGnriaimegGrivqlgtp 249
                 +sGG ++r  + + + ++ ++ ++de  s ld    + +   + +++++ + +i++++h   l + +k  + + +m +G+iv+ g p
  MMETSP1137-20121227|9848_1 235 FSGGEKKRNEILQMVLLDPELAILDETDSGLDIDALKTVAAGVNAFRSEGN-AIILITHYqrLLDYIK-PDFVHVMAEGKIVRSGGP 319
                 567777777777777777777777777777765444444444444444332.3333333211222222.234556666666666655 PP

>> TIGR01271  CFTR_protein: cystic fibrosis transmembrane conductor regulator (CFTR)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.5   0.0   0.00011    0.0078     426     475 ..      87     138 ..      72     154 .. 0.78
   2 ?   -2.7   0.0       2.1   1.4e+02     549     587 ..     235     273 ..     223     311 .. 0.84

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 0.00011
   TIGR01271 426 ddglffsnlslyv..tpvlknislklekgqllavagstgsgkssllmmilge 475
                 ++ l  + l   v   p+lk ++l + +g++ a+ g  gsgks++  +++g 
  MMETSP1137-20121227|9848_1  87 EELLKVTGLEAQVgdKPILKGVDLTVRRGEVHAIMGPNGSGKSTFSKVLVGH 138
                 5555555555444226***************************998888875 PP

  == domain 2    score: -2.7 bits;  conditional E-value: 2.1
   TIGR01271 549 lsggqrarislaravykdadlylldspfsyldvvtekei 587
                 +sgg++ r  + + v  d +l +ld   s ld+ + k +
  MMETSP1137-20121227|9848_1 235 FSGGEKKRNEILQMVLLDPELAILDETDSGLDIDALKTV 273
                 799999999999999999999999999999999877765 PP

>> TIGR01069  mutS2: MutS2 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00026     0.018     384     450 ..     233     299 ..     227     309 .. 0.82

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 0.00026
   TIGR01069 384 STFsshmkniseiLkkl.densLvllDElgaGTDpdegsaLaislLeklakqnalvlitTHykelkal 450
                 S Fs+  k+  eiL+ +  ++ L +lDE  +G D+d  ++ a ++      + + ++  THy++l  +
  MMETSP1137-20121227|9848_1 233 SGFSGGEKKRNEILQMVlLDPELAILDETDSGLDIDALKTVAAGVNA-FRSEGNAIILITHYQRLLDY 299
                 7899999999999998625799********************99855.555555566668***99655 PP

>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   0.0   0.00091     0.063      24      37 ..     116     129 ..     108     131 .. 0.89
   2 ?   -0.1   0.0      0.44        31    1117    1154 ..     256     294 ..     255     297 .. 0.87

  Alignments for each domain:
  == domain 1    score: 8.8 bits;  conditional E-value: 0.00091
   TIGR02168  24 gitgiVGPNGcGKS 37 
                 ++ +i GPNG+GKS
  MMETSP1137-20121227|9848_1 116 EVHAIMGPNGSGKS 129
                 688**********9 PP

  == domain 2    score: -0.1 bits;  conditional E-value: 0.44
   TIGR02168 1117 ciLDEVdApLDdaNveRFakllkefskktQ.FIviTHnk 1154
                   iLDE d+ LD   ++  a  ++ f+++   +I+iTH +
  MMETSP1137-20121227|9848_1  256 AILDETDSGLDIDALKTVAAGVNAFRSEGNaIILITHYQ 294 
                  69*********999***********877655999***65 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (341 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       179  (0.0436373); expected 82.0 (0.02)
Passed bias filter:                      177  (0.0431497); expected 82.0 (0.02)
Passed Vit filter:                        90  (0.0219405); expected 4.1 (0.001)
Passed Fwd filter:                        59  (0.0143832); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              59  [number of targets reported over threshold]
# CPU time: 1.13u 0.19s 00:00:01.31 Elapsed: 00:00:00.98
# Mc/sec: 459.27
//
Query:       MMETSP1137-20121227|9849_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        29  (0.00706972); expected 82.0 (0.02)
Passed bias filter:                       24  (0.0058508); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.13s 00:00:00.23 Elapsed: 00:00:00.25
# Mc/sec: 269.26
//
Query:       MMETSP1137-20121227|9850_1  [L=181]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (181 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       117  (0.0285227); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.11s 00:00:00.28 Elapsed: 00:00:00.52
# Mc/sec: 459.42
//
Query:       MMETSP1137-20121227|9852_1  [L=275]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.7e-08   32.4   0.0    2.6e-08   31.8   0.0    1.3  1  TIGR01024 rplS_bact: ribosomal protein L19


Domain annotation for each model (and alignments):
>> TIGR01024  rplS_bact: ribosomal protein L19
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.8   0.0   6.4e-12   2.6e-08       5     104 ..     131     234 ..     127     239 .. 0.79

  Alignments for each domain:
  == domain 1    score: 31.8 bits;  conditional E-value: 6.4e-12
   TIGR01024   5 keleqen....qlkkelpefevGdtvrvavkiveGkkeRlqafeGvviakrgrGisetftvrkisegvgverifllyspkiesievvrr..GkvrraklyYlRerk 104
                 +e+eq++    +  +++  f  G  ++v+ + +    e + +  G+++ ++ rG+  +f +    ++ +ve +f+lysp i+ i+v  +   k +r+klyY+R+r 
  MMETSP1137-20121227|9852_1 131 NEIEQKKieaaEPWRKCDRFDRGCILEVHHRASL--SEPTETALGLCLGIHKRGLATSFRLLCKPDNTPVEYNFKLYSPLIAAIHVRSTpaKKPKRSKLYYMRDRL 234
                 5555554333344566778888888888877655..45566778******************************************875225789********985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (275 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        53  (0.0129205); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.23u 0.14s 00:00:00.37 Elapsed: 00:00:00.35
# Mc/sec: 1037.06
//
Query:       MMETSP1137-20121227|9853_1  [L=81]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (81 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       203  (0.0494881); expected 82.0 (0.02)
Passed bias filter:                      159  (0.0387616); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.15s 00:00:00.30 Elapsed: 00:00:00.30
# Mc/sec: 356.37
//
Query:       MMETSP1137-20121227|9854_1  [L=331]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (331 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        92  (0.0224281); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.15s 00:00:00.40 Elapsed: 00:00:00.34
# Mc/sec: 1284.95
//
Query:       MMETSP1137-20121227|9855_1  [L=310]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (310 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       114  (0.0277913); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.16s 00:00:00.41 Elapsed: 00:00:00.30
# Mc/sec: 1363.89
//
Query:       MMETSP1137-20121227|9856_1  [L=231]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.7e-19   67.9   0.0    3.5e-19   66.9   0.0    1.5  1  TIGR01126 pdi_dom: protein disulfide-isomerase domain
    1.4e-17   62.2   0.0    2.2e-16   58.3   0.0    2.0  1  TIGR01130 ER_PDI_fam: protein disulfide isomerases


Domain annotation for each model (and alignments):
>> TIGR01126  pdi_dom: protein disulfide-isomerase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.9   0.0   1.7e-22   3.5e-19       1     102 [.      28     129 ..      28     131 .. 0.95

  Alignments for each domain:
  == domain 1    score: 66.9 bits;  conditional E-value: 1.7e-22
   TIGR01126   1 lvaenfdelvldenkdvlvefyaPWCGhCkklaPeyeklakelkkeeekvkiakvdatae.kelaskfkvsgfPtlkffkkgkkepvdyeGeReaeelvefve 102
                 l+ +nfd lvl++ k+++v+f        k++ P ++ l++++++++ kv i++vd+t   kel+++f+v+g+Ptlk+f+  ++e ++yeG+R+++el +f +
  MMETSP1137-20121227|9856_1  28 LTPKNFDRLVLQSGKSAFVKFLRLGEAIXKSMKPDWDALGEKYEDSK-KVLIGDVDCTGSgKELCDRFGVTGYPTLKYFNPPDTEGETYEGGRSLKELKKFAK 129
                 6789*******************99999****************876.8*********87699*************************************986 PP

>> TIGR01130  ER_PDI_fam: protein disulfide isomerases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.3   0.0     1e-19   2.2e-16       4     178 ..      26     196 ..      24     226 .. 0.62

  Alignments for each domain:
  == domain 1    score: 58.3 bits;  conditional E-value: 1e-19
   TIGR01130   4 leltkenfddli.kenelvLveFYAPWCGHCksLaPeYekAAeelkkkspkvklakvDatee.kelaqkygvsGyPtLkifrnge.sssdYnGpReaegivkylkkqsgPaskeletvedlekllekkevvvvgvfkdldselvetflevaeklrdkfkavasssdeaalkkleakkd 178
                 +elt +nfd l+ ++ + + v+F        ks++P++++  e+ ++++ kv ++ vD+t   kel++++gv+GyPtLk+f   + + + Y+G+R+ +++ k+ k   gP  +  +t ++     ++++  +  +   +++e+  +  ++ +++ d+++  ++   ++  +++ea+++
  MMETSP1137-20121227|9856_1  26 VELTPKNFDRLVlQSGKSAFVKFLRLGEAIXKSMKPDWDALGEKYEDSK-KVLIGDVDCTGSgKELCDRFGVTGYPTLKYFNPPDtEGETYEGGRSLKELKKFAK-SLGPGCS-AATWDKCS---DAQKAELQPYLD-MSEEELVALRDATQSAIDTAQSEHDALLKQLQETFEASQK 196
                 67788888875426667888888877666779*******9999988877.9*********9889*****************988778999************975.5788774.33333333...222223333332.2223333333333333333331111111122222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (231 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       232  (0.0565578); expected 82.0 (0.02)
Passed bias filter:                      179  (0.0436373); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.26u 0.13s 00:00:00.39 Elapsed: 00:00:00.44
# Mc/sec: 692.94
//
Query:       MMETSP1137-20121227|9858_1  [L=360]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   3.4e-238  787.0  14.9   3.8e-238  786.8  10.4    1.0  1  TIGR01151 psbA: photosystem q(b) protein
    4.6e-50  168.6  15.0    5.6e-50  168.3  10.4    1.0  1  TIGR01152 psbD: photosystem II D2 protein (photosystem q(a) protein)
    1.8e-14   51.5   5.4    1.8e-14   51.5   3.8    1.9  2  TIGR01115 pufM: photosynthetic reaction center M subunit
    1.2e-13   48.8   4.7    1.2e-13   48.8   3.3    1.6  1  TIGR01157 pufL: photosynthetic reaction center L subunit


Domain annotation for each model (and alignments):
>> TIGR01151  psbA: photosystem q(b) protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  786.8  10.4  3.7e-241  3.8e-238       1     359 [.       1     359 [.       1     360 [] 1.00

  Alignments for each domain:
  == domain 1    score: 786.8 bits;  conditional E-value: 3.7e-241
   TIGR01151   1 mtatlerresaslwerfcewitstenrlyigwfgvlmiptlltatsvfiiafiaappvdidgirepvagsllygnniisgavvpssnaiglhfypiweaasldewlynggpyqlvvlhfllgvacylgrewelsyrlgmrpwiavaysapvaaatavfliypigqgsfsdgmplgisgtfnfmlvfqaehnillhpfhmlgvagvfggslfsamhgslvtsslirettenesanygykfgqeeetynivaahgyfgrlifqyasfnnsrslhfflaawpvvgiwftalgvstmafnlngfnfnqsvvdsqgrvintwadiinranlglevmhernahnfpldlaagevapvaleapain 359
                 mt+tlerresas+we+fc witstenrlyigwfg+lm+ptlltats++iiafiaappvdidgirepvagsllygnniisgavvpssnaig+hfypiweaas+dewlynggpyqlvv+hf++gv++y+grewelsyrlgmrpwi+va+sapvaaa+avf+iypigqgsfsdgmplgisgtfnfmlvfqaehnil+hpfhmlgvagvfggslfsamhgslvtssliret+enes nygykfgqeeetynivaahgyfgrlifqyasfnnsr+lhffl+awpvvgiwfta+gv+tmafnlngfnfnqsvvdsqgrvintwadi+nr+nlg+evmhernahnfpldlaage++pval apa++
  MMETSP1137-20121227|9858_1   1 MTTTLERRESASFWEQFCAWITSTENRLYIGWFGCLMFPTLLTATSAYIIAFIAAPPVDIDGIREPVAGSLLYGNNIISGAVVPSSNAIGVHFYPIWEAASIDEWLYNGGPYQLVVFHFFIGVCAYIGREWELSYRLGMRPWICVAFSAPVAAAAAVFVIYPIGQGSFSDGMPLGISGTFNFMLVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETSENESLNYGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRALHFFLGAWPVVGIWFTAMGVATMAFNLNGFNFNQSVVDSQGRVINTWADILNRSNLGMEVMHERNAHNFPLDLAAGESLPVALVAPAVA 359
                 9*******************************************************************************************************************************************************************************************************************************************************************************************************************************************************************996 PP

>> TIGR01152  psbD: photosystem II D2 protein (photosystem q(a) protein)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  168.3  10.4   5.4e-53   5.6e-50       1     300 [.       1     304 [.       1     319 [. 0.88

  Alignments for each domain:
  == domain 1    score: 168.3 bits;  conditional E-value: 5.4e-53
   TIGR01152   1 mtiavgkakeerdlfdvlddwlk.rdrfvfvgwsglllfpcaylalggwltgttfvtswythg....lassylegcnfltaavstpanslahsllllwgpeaqgdftrwvqlgglwtfvalhgafaligfmlrqfelarsvqlrpynaiafsgpiavfvsvfliyplgqsgwffapsfgvaaifrfilflqgfhnwtlnpfhmmgvagvlgaallcaihgatventlfedgdgantf.rafnptqaeetysmvtanrfwsq.ifgva.fsnkrwlhffmlfvpvtglwmsaigvvglalnlraydfvs 300
                 mt ++++ + + ++++ +  w+   +  +++gw g l+fp+   a  +++     +      g    +a s l g n+++ av   +n+++  +  +w +     +  w+  gg +++v +h  +++  ++ r++el+  +++rp+ ++afs+p+a   +vf+iyp+gq ++     +g+++ f f+l++q  hn  ++pfhm+gvagv+g++l+ a+hg+ v  +l+ ++ +++++   ++  q eety +v+a  ++ + if  a f n r lhff+   pv+g+w +a+gv  +a+nl  ++f  
  MMETSP1137-20121227|9858_1   1 MTTTLERRE-SASFWEQFCAWITsTENRLYIGWFGCLMFPTLLTATSAYIIAFIAAPPVDIDGirepVAGSLLYGNNIISGAVVPSSNAIGVHFYPIWEAA---SIDEWLYNGGPYQLVVFHFFIGVCAYIGREWELSYRLGMRPWICVAFSAPVAAAAAVFVIYPIGQGSFSDGMPLGISGTFNFMLVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETSENESLnYGYKFGQEEETYNIVAAHGYFGRlIFQYAsFNNSRALHFFLGAWPVVGIWFTAMGVATMAFNLNGFNFNQ 304
                 566666654.6677788888986246779*****************999987666655555552222799***********************99999753...5779*********************************************************************************************************************9998777666651689**************99887637876549***********************************9964 PP

>> TIGR01115  pufM: photosynthetic reaction center M subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.5   3.8   1.8e-17   1.8e-14     109     224 ..     106     220 ..      95     234 .. 0.94
   2 ?   -0.6   0.0      0.13   1.4e+02      42      75 ..     264     297 ..     238     307 .. 0.79

  Alignments for each domain:
  == domain 1    score: 51.5 bits;  conditional E-value: 1.8e-17
   TIGR01115 109 lnegGwwliaglfltvsillWwvrvytraralglgkhlawafaaaiflylvlglirPvllGswseavpfGifahldWtaafslryGnlyynPfhmlsiaflyGsallfamhgatil 224
                 l +gG +++  + +++ ++++  r ++ +  lg+  ++  af a ++   ++ +i P+  Gs+s+++p Gi   ++++  f  ++ n+   Pfhml +a ++G +l+ amhg+ + 
  MMETSP1137-20121227|9858_1 106 LYNGGPYQLVVFHFFIGVCAYIGREWELSYRLGMRPWICVAFSAPVAAAAAVFVIYPIGQGSFSDGMPLGISGTFNFMLVFQAEH-NILMHPFHMLGVAGVFGGSLFSAMHGSLVT 220
                 679******************************************************************************9998.88899*********************9775 PP

  == domain 2    score: -0.6 bits;  conditional E-value: 0.13
   TIGR01115  42 klGdaqiGpiylgvlgivslvfgllailiiglnl 75 
                  + +++   ++lg++ +v + f ++ + ++ +nl
  MMETSP1137-20121227|9858_1 264 SFNNSRALHFFLGAWPVVGIWFTAMGVATMAFNL 297
                 5667777789999999999999999888888875 PP

>> TIGR01157  pufL: photosynthetic reaction center L subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.8   3.3   1.2e-16   1.2e-13      46     168 ..     105     226 ..      71     251 .. 0.86

  Alignments for each domain:
  == domain 1    score: 48.8 bits;  conditional E-value: 1.2e-16
   TIGR01157  46 plakgglwqliticalgafvswalreveiarklgigyhvplafslailayltlvvirpvlmgawgyafpygifthldwvsntgyqygnfhynpahmlaislffttalalalhgalvlsaanpe 168
                  l +gg +ql+ +   +  ++++ re e++ +lg+   + +afs  + a  ++ vi p+  g+++ ++p gi   ++++        n+   p+hml+++  f  +l  a+hg+lv s+   e
  MMETSP1137-20121227|9858_1 105 WLYNGGPYQLVVFHFFIGVCAYIGREWELSYRLGMRPWICVAFSAPVAAAAAVFVIYPIGQGSFSDGMPLGISGTFNFMLVFQA-EHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRE 226
                 4789************************************************************************99876554.4578899************************9986544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (360 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        89  (0.0216967); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.31u 0.14s 00:00:00.45 Elapsed: 00:00:00.45
# Mc/sec: 1055.91
//
Query:       MMETSP1137-20121227|9859_1  [L=268]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (268 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       262  (0.0638713); expected 82.0 (0.02)
Passed bias filter:                      134  (0.032667); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.15s 00:00:00.39 Elapsed: 00:00:00.33
# Mc/sec: 1071.91
//
Query:       MMETSP1137-20121227|9860_1  [L=225]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (225 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        94  (0.0229157); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.16s 00:00:00.37 Elapsed: 00:00:00.38
# Mc/sec: 781.51
//
Query:       MMETSP1137-20121227|9861_1  [L=182]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (182 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        49  (0.0119454); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.14s 00:00:00.31 Elapsed: 00:00:00.31
# Mc/sec: 774.90
//
Query:       MMETSP1137-20121227|9862_1  [L=253]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (253 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       106  (0.0258411); expected 82.0 (0.02)
Passed bias filter:                       99  (0.0241346); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.18s 00:00:00.41 Elapsed: 00:00:00.56
# Mc/sec: 596.31
//
Query:       MMETSP1137-20121227|9863_1  [L=262]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (262 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        71  (0.0173086); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.12s 00:00:00.34 Elapsed: 00:00:00.34
# Mc/sec: 1017.09
//
Query:       MMETSP1137-20121227|9864_1  [L=166]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.013   11.4   0.0      0.022   10.6   0.0    1.4  1  TIGR00870 trp: transient-receptor-potential calcium channel protein
       0.02   11.8   0.2      0.026   11.4   0.2    1.2  1  TIGR03249 KdgD: 5-dehydro-4-deoxyglucarate dehydratase
        4.8    5.3   9.1        2.2    6.4   0.4    2.9  3  TIGR00823 EIIA-LAC: PTS system, lactose-specific IIa component


Domain annotation for each model (and alignments):
>> TIGR00870  trp: transient-receptor-potential calcium channel protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   1.6e-05     0.022      59     152 ..      15     132 ..       6     137 .. 0.73

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 1.6e-05
   TIGR00870  59 llsaaieneneelteLllkke.....egevGdalLha.iskelvdaveailllllkaarksltls..................elandestseftkgitalilAihkqnyeivklLle 152
                 +l aa +++ e l +L  ++       ge Gd++Lh+ ++ + + +ve++l+l ++ +  ++  s                    a +      + g t+l+ A       +v +Lle
  MMETSP1137-20121227|9864_1  15 VLAAAEQGDLERLRALCAENParataAGEDGDTALHMgALYGKQAIVEECLRLGADVNARDEDDStalhdacaggftsiaqilIKAGADVAAVDSDGETPLHTASNGGHAATVAALLE 132
                 566899999999999999999999999********98466688999*******99887665555545677777777777754433344444445666777777777777777777765 PP

>> TIGR03249  KdgD: 5-dehydro-4-deoxyglucarate dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.2   1.9e-05     0.026      40     105 ..      76     138 ..      53     149 .. 0.83

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 1.9e-05
   TIGR03249  40 dedlealfvagGtGeffsltkaeveqvvevaveaakgkvPvlagvGgnlsvaieiaraaekkGadG 105
                 ++d  al  a+ +G f s+ +  +++  +va   ++g++P+ ++  g+   a  +a + e +Gad 
  MMETSP1137-20121227|9864_1  76 EDDSTALHDAC-AGGFTSIAQILIKAGADVAAVDSDGETPLHTASNGG--HAATVAALLEAAGADR 138
                 67788999998.688***************************998777..4667889999999983 PP

>> TIGR00823  EIIA-LAC: PTS system, lactose-specific IIa component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   0.4    0.0016       2.2      20      49 ..      11      40 ..       4      63 .. 0.80
   2 ?    2.2   0.3     0.034        46      23      53 ..      80     110 ..      69     134 .. 0.70
   3 ?    1.6   0.3      0.05        68       7      36 ..     127     156 ..     121     162 .. 0.74

  Alignments for each domain:
  == domain 1    score: 6.4 bits;  conditional E-value: 0.0016
   TIGR00823 20 kalealkaakaGdfakakelleeaeeelae 49
                k+ e l+aa++Gd ++ ++l +e  +  ++
  MMETSP1137-20121227|9864_1 11 KMAEVLAAAEQGDLERLRALCAENPARATA 40
                67899*************999887665555 PP

  == domain 2    score: 2.2 bits;  conditional E-value: 0.034
   TIGR00823  23 ealkaakaGdfakakelleeaeeelaeahka 53 
                  al+ a aG f    ++l +a++++a+  + 
  MMETSP1137-20121227|9864_1  80 TALHDACAGGFTSIAQILIKAGADVAAVDSD 110
                 699999*****99999999999998876654 PP

  == domain 3    score: 1.6 bits;  conditional E-value: 0.05
   TIGR00823   7 vfelvlyaGdaRskalealkaakaGdfaka 36 
                 v +l+  aG  R k+le  +aa+a  ++ a
  MMETSP1137-20121227|9864_1 127 VAALLEAAGADRGKLLEMRNAADARAVDLA 156
                 567788899999999999998876555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (166 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       172  (0.0419308); expected 82.0 (0.02)
Passed bias filter:                      122  (0.0297416); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.22u 0.13s 00:00:00.35 Elapsed: 00:00:00.34
# Mc/sec: 644.42
//
Query:       MMETSP1137-20121227|9865_1  [L=257]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (257 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       135  (0.0329108); expected 82.0 (0.02)
Passed bias filter:                      112  (0.0273038); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.14s 00:00:00.35 Elapsed: 00:00:00.35
# Mc/sec: 969.18
//
Query:       MMETSP1137-20121227|9866_1  [L=274]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (274 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       125  (0.0304729); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.15s 00:00:00.37 Elapsed: 00:00:00.36
# Mc/sec: 1004.58
//
Query:       MMETSP1137-20121227|9868_1  [L=107]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (107 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        29  (0.00706972); expected 82.0 (0.02)
Passed bias filter:                       29  (0.00706972); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.14s 00:00:00.26 Elapsed: 00:00:00.27
# Mc/sec: 523.07
//
Query:       MMETSP1137-20121227|9869_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        71  (0.0173086); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.12s 00:00:00.24 Elapsed: 00:00:01.07
# Mc/sec: 65.38
//
Query:       MMETSP1137-20121227|9870_1  [L=208]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      3e-06   23.1  18.7    3.4e-06   22.8  12.9    1.0  1  TIGR02169 SMC_prok_A: chromosome segregation protein SMC
    8.3e-06   21.6  20.0      1e-05   21.3  13.8    1.0  1  TIGR02168 SMC_prok_B: chromosome segregation protein SMC


Domain annotation for each model (and alignments):
>> TIGR02169  SMC_prok_A: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.8  12.9   1.7e-09   3.4e-06     328     502 ..      32     206 ..      24     208 .] 0.96

  Alignments for each domain:
  == domain 1    score: 22.8 bits;  conditional E-value: 1.7e-09
   TIGR02169 328 aeaeidklkeeieelereieeekkereklkeelkelkeeleelraeleevdkeaaelreelkelkekleklkeelnelkreldrlleelkrleeelaelkaelerieekiaeleeeleelaeeikkaeqkleqlkedlekaekelrklkeeleklekelselerelaeleaqaka 502
                 a a+++ l++++ + ++++++ + + e+l  e +++++   +  a ++++ ++ ++l+    e+k + ek++  +++ +++l+rl  ++  + +e++ + +++++++ +  + +ee   ++e  ++   kle++++ +++ +k+ ++ k+el+k+++   +l+rel+ + a+a a
  MMETSP1137-20121227|9870_1  32 ATAHLQTLNSKLVKARHSLHAANLKVESLRGECDKSRQAVLANDATIAALTEQEQALKVSYVERKLAYEKAHADKYSKQQQLKRLRTHKAAVAKEREAAINAVAAKRREWRKAHEEHMRADESAEAIGAKLEHVEKLKDECKKRAMQHKAELAKYSEMYDSLKRELDVIYASAAA 206
                 56778899999999*********************************************************************************************************************************************************99998876 PP

>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3  13.8   5.1e-09     1e-05     321     488 ..      32     199 ..      24     207 .. 0.76

  Alignments for each domain:
  == domain 1    score: 21.3 bits;  conditional E-value: 5.1e-09
   TIGR02168 321 leeqleeleskkeeleeelaeleeeleelkeelesleaeleeaeaeleelesrleeleeeleelrsevaeleeqlaslnaelerleaeleqleerrerlkqeieelekkleeaeaelkelqeeleeleeeleeleeelerleealeeleeeleeaeqalqkaeeelaq 488
                 ++++l++l+sk+ +++ +l++ + ++e+l+ e+++ ++++ +  a++++l++++++l+  + e + ++ ++  ++ s +++l+rl++++ +++++re + + + +++++  +a++e  + +e+ e   ++le++e+ +++ ++++ + ++el++ ++ ++++++el+ 
  MMETSP1137-20121227|9870_1  32 ATAHLQTLNSKLVKARHSLHAANLKVESLRGECDKSRQAVLANDATIAALTEQEQALKVSYVERKLAYEKAHADKYSKQQQLKRLRTHKAAVAKEREAAINAVAAKRREWRKAHEEHMRADESAEAIGAKLEHVEKLKDECKKRAMQHKAELAKYSEMYDSLKRELDV 199
                 456777888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888887777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (208 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       445  (0.108484); expected 82.0 (0.02)
Passed bias filter:                      109  (0.0265724); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.26u 0.17s 00:00:00.43 Elapsed: 00:00:01.24
# Mc/sec: 221.40
//
Query:       MMETSP1137-20121227|9871_1  [L=443]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (443 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        98  (0.0238908); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.16s 00:00:00.47 Elapsed: 00:00:00.37
# Mc/sec: 1580.30
//
Query:       MMETSP1137-20121227|9872_1  [L=525]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (525 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       837  (0.204047); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                        10  (0.00243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 1.01u 0.15s 00:00:01.15 Elapsed: 00:00:01.05
# Mc/sec: 659.95
//
Query:       MMETSP1137-20121227|9873_1  [L=101]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        45  (0.0109703); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.13s 00:00:00.29 Elapsed: 00:00:00.25
# Mc/sec: 533.24
//
Query:       MMETSP1137-20121227|9874_1  [L=223]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00021   18.8   0.9    0.00029   18.3   0.6    1.2  1  TIGR02737 caa3_CtaG: cytochrome c oxidase assembly factor CtaG


Domain annotation for each model (and alignments):
>> TIGR02737  caa3_CtaG: cytochrome c oxidase assembly factor CtaG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.6   7.1e-08   0.00029      15     103 ..      97     184 ..      89     192 .. 0.76

  Alignments for each domain:
  == domain 1    score: 18.3 bits;  conditional E-value: 7.1e-08
   TIGR02737  15 llilllavallyllitgpyrrrfekadkvskkqkvyfllgllllyivkGsPldllghliltahmvqmavlylvvppllllGiPawl.yek 103
                 +l l +++  + +++ ++ r r +++ ++ k+q + f+++l+ l   +G+ + ++  l  ++h ++ a+ y++++ l++lG+ +++ y +
  MMETSP1137-20121227|9874_1  97 ILWLAVKLIPTEVMVSARERAR-SEPLRLHKHQGAAFFIALIWLISLEGAAMAVMPLLPHSVHHFEHAI-YIALAALFVLGVGIYMlYTR 184
                 4444444444445554444444.457789999**********************************997.89999******998751544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (223 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       103  (0.0251097); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.19u 0.16s 00:00:00.35 Elapsed: 00:00:00.59
# Mc/sec: 498.87
//
Query:       MMETSP1137-20121227|9875_1  [L=478]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (478 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        99  (0.0241346); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.11s 00:00:00.45 Elapsed: 00:00:00.81
# Mc/sec: 778.90
//
Query:       MMETSP1137-20121227|9876_1  [L=244]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (244 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        79  (0.0192589); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.08s 00:00:00.30 Elapsed: 00:00:01.45
# Mc/sec: 222.11
//
Query:       MMETSP1137-20121227|9877_1  [L=107]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (107 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        73  (0.0177962); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.16s 00:00:00.31 Elapsed: 00:00:00.88
# Mc/sec: 160.49
//
Query:       MMETSP1137-20121227|9878_1  [L=501]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (501 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       104  (0.0253535); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.15s 00:00:00.50 Elapsed: 00:00:00.71
# Mc/sec: 931.36
//
Query:       MMETSP1137-20121227|9880_1  [L=150]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.018   11.7   0.0      0.028   11.0   0.0    1.4  1  TIGR01932 hflC: HflC protein


Domain annotation for each model (and alignments):
>> TIGR01932  hflC: HflC protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   6.9e-06     0.028      49     143 ..      49     141 ..       8     148 .. 0.76

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 6.9e-06
   TIGR01932  49 eaGLhvkiPliesvkildakiqtvDgeadrivtkekkdlivdtyikWri.eDf.kkyYlatgggnisaAevlikrkiedrlRseigklelkeivrss 143
                   G h++iP +++ +i+d +i    +   +  tk+ + ++++  +  r  eDf +  +  +g   + + e  + ++ +++l++++++++ ++++++ 
  MMETSP1137-20121227|9880_1  49 GEGTHFRIPWLQTPHIFDVRIRPR-NIGSNTGTKDLQVVTINLRVLSRPeEDFlHEIFSNLG---LDYDERVLPSIGNEVLKAVVAQYNAEQLITQR 141
                 5699*****************765.66677899********998877752576245677777...77888888888999999999999999988865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (150 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        84  (0.0204778); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.18u 0.15s 00:00:00.32 Elapsed: 00:00:00.38
# Mc/sec: 521.01
//
Query:       MMETSP1137-20121227|9881_1  [L=186]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (186 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        85  (0.0207216); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.15s 00:00:00.32 Elapsed: 00:00:00.38
# Mc/sec: 646.05
//
Query:       MMETSP1137-20121227|9882_1  [L=394]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0012   16.0   0.0      0.012   12.8   0.0    2.1  1  TIGR01762 chlorin-enz: chlorinating enzymes
  ------ inclusion threshold ------
      0.019   12.5   0.0        1.2    6.5   0.0    2.2  2  TIGR01367 pyrE_Therm: orotate phosphoribosyltransferase


Domain annotation for each model (and alignments):
>> TIGR01762  chlorin-enz: chlorinating enzymes
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.8   0.0   5.7e-06     0.012     134     241 ..     196     304 ..     189     327 .. 0.78

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 5.7e-06
   TIGR01762 134 itvwtaftdatrenGclkvipGthnsl..nydetrrltfepdknnsvvkggkkrGvyGydyrklkldenwkpdeasavplemkaGqfiiftsrlmhaslpnsseskirlG 241
                 i  w a+  a ++nGcl   pG+h +    +  +r+ + +  ++  v     ++      ++         p e   vpl  + G++++++ +l h s+pn+se++ r  
  MMETSP1137-20121227|9882_1 196 IGLWLALQRAHEHNGCLWARPGSHTEGlrRHFARRHKDGDAAQVHTVFVPVDETPCAASAWEGEMPAGVRCPSELGFVPLPAEEGDLVVIHGQLDHLSMPNTSEES-RHT 304
                 789********************9874113334455556666666777666667777777766666677789*****************************99876.444 PP

>> TIGR01367  pyrE_Therm: orotate phosphoribosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.0    0.0046       9.4       7      33 ..      82     108 ..      77     113 .. 0.88
   2 ?    6.5   0.0   0.00061       1.2      17      45 ..     152     180 ..     142     190 .. 0.88

  Alignments for each domain:
  == domain 1    score: 3.6 bits;  conditional E-value: 0.0046
   TIGR01367   7 kkaGalleGhflLssGkhssvylqsak 33 
                 ++ Ga  e  + LssG +  ++l  a 
  MMETSP1137-20121227|9882_1  82 EQEGAQGEADYFLSSGDKVRFFLEPAA 108
                 5789******************98765 PP

  == domain 2    score: 6.5 bits;  conditional E-value: 0.00061
   TIGR01367  17 flLssGkhssvylqsakllekPklaeklg 45 
                 ++ s G +s+  +qs  ++++P+ ++k++
  MMETSP1137-20121227|9882_1 152 LVSSIGLRSPSLVQSMYIFKQPRIGDKVT 180
                 56677*******************99986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (394 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        73  (0.0177962); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.28u 0.16s 00:00:00.44 Elapsed: 00:00:00.37
# Mc/sec: 1405.51
//
Query:       MMETSP1137-20121227|9884_1  [L=120]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (120 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        48  (0.0117016); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.18s 00:00:00.34 Elapsed: 00:00:00.30
# Mc/sec: 527.96
//
Query:       MMETSP1137-20121227|9885_1  [L=178]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (178 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        55  (0.0134081); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.16s 00:00:00.33 Elapsed: 00:00:00.34
# Mc/sec: 691.00
//
Query:       MMETSP1137-20121227|9887_1  [L=373]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      1e-12   45.6   0.0    1.8e-12   44.8   0.0    1.3  1  TIGR01293 Kv_beta: voltage-dependent potassium channel beta subunit


Domain annotation for each model (and alignments):
>> TIGR01293  Kv_beta: voltage-dependent potassium channel beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.8   0.0   4.3e-16   1.8e-12      16     309 ..      53     337 ..      42     345 .. 0.83

  Alignments for each domain:
  == domain 1    score: 44.8 bits;  conditional E-value: 4.3e-16
   TIGR01293  16 lglgtwv.....vfgsqisdeqa.edllklayesginlfdiaevyaagkaetelgkilkkkgwrrssyvittkifwggkaeeerglsrkhiieglkaslerlqleyvdivlanradpsspmeevvramtyvinqglalywgtsrwsaveimeaysvarqfnlippiveqaeyhlfqrekvelqlpelyhkigvgavtwsplalalvdskyd..dklpkaskatlkgyqwlkekvrseegrrqqarlkdlaalaeklgctlaqlaiawslrsegvssvllgassaeqlmeslgslqvllklss 309
                 lglg+w+      +g + s++ a ++++  a+ +g+ +fd+aevy  g +e+ lgk           + i+tk               k ++e+ k s +rl  + +d+  ++ ++  +  e+    +   +n gl    g s +  ++ m a   +     +p + +q +  l+    ++  l +  + + v ++++spl l+l + k+   dklpk+ +++      l e+   ++g  q  +         + g ++aq+a+aw++ +    +v+ ga + +q   ++ + q+ l  + 
  MMETSP1137-20121227|9887_1  53 LGLGAWAwgdslFWGYDTSEDAAlKEVFDYAVSKGVRFFDTAEVYGLGISEKLLGKFAAASPV-SDEIQIATKFAAL----PW-RTKPKDVLEAAKRSTDRLG-RPIDLYQIHFPNAWAN-EQYWEGLGEAVNSGLVRSAGVSNYG-IDAMRACRSTLSARGVPLVSNQIQLSLIYPFALQNGLVDTCRELDVAVLAYSPLGLGLLTDKFAlpDKLPKGPRKA------LAEQYLQDDGFVQLLKSMRQVGAEGHAGASPAQVALAWCIAKG--ACVIPGARTLKQAESNVAASQMTLTAAE 337
                 8999996333323566777777647899****************************9776655.5567788885322....22.345799************8.679**99999887665.58899*****************996.8999999999999999*********************************************9864489****9999......677788899988876655555556678*************875..69****************9998766544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (373 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        95  (0.0231594); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.30u 0.18s 00:00:00.48 Elapsed: 00:00:00.47
# Mc/sec: 1047.49
//
Query:       MMETSP1137-20121227|9888_1  [L=583]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (583 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       177  (0.0431497); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.14s 00:00:00.50 Elapsed: 00:00:00.50
# Mc/sec: 1538.99
//
Query:       MMETSP1137-20121227|9889_1  [L=197]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (197 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       142  (0.0346173); expected 82.0 (0.02)
Passed bias filter:                      107  (0.0260848); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.16s 00:00:00.36 Elapsed: 00:00:00.30
# Mc/sec: 866.73
//
Query:       MMETSP1137-20121227|9890_1  [L=102]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (102 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        57  (0.0138957); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.14s 00:00:00.27 Elapsed: 00:00:00.28
# Mc/sec: 464.24
//
Query:       MMETSP1137-20121227|9891_1  [L=98]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (98 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        38  (0.00926377); expected 82.0 (0.02)
Passed bias filter:                       37  (0.00901999); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.34
# Mc/sec: 380.44
//
Query:       MMETSP1137-20121227|9892_1  [L=672]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.6e-45  153.3   0.0    2.2e-45  152.9   0.0    1.1  1  TIGR01982 UbiB: 2-polyprenylphenol 6-hydroxylase


Domain annotation for each model (and alignments):
>> TIGR01982  UbiB: 2-polyprenylphenol 6-hydroxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  152.9   0.0   5.3e-49   2.2e-45      39     296 ..     214     477 ..     185     524 .. 0.83

  Alignments for each domain:
  == domain 1    score: 152.9 bits;  conditional E-value: 5.3e-49
   TIGR01982  39 skeearkeslgerlrlaleelGPifiKlGQvlstRaDllpeeiaeeLslLqdkvppfdlkaarkvieaelgkpveelFaefeekPlAaASiaQvhkAvl.vegkeVavKvlRPgiekkieadikllellaklvekllpeakrlrptevvkefektlkeEldlrlEaanaselkenfkn........dkklivPevyweltservltlewidgipvsdleklkeaGldlkalaenlvesflkqvlrdgfFHaDlHpGNilvakdgkii 296
                 +++e + + +++ l+ +l   G i++KlGQ ++    ++pe +++ Ls L     + + +++ kvi ++lg   eelF ++e +PlA+AS+aQvh+A+  ++g   avKv+ P++++  +ad++ ++ + kl+  l+p+   l+   + +e++ +l +Eld++ Ea+ ++ +++  ++         + ++vP v+ +lt+ rvlt+ + +g +v+d+ +l+++ + +  +++ l e+f+ q++  +f H D+HpGN+l++++++ +
  MMETSP1137-20121227|9892_1 214 TWHELHTRGAQKMLAMCLA-NGGIYVKLGQHIAQLDYIVPEPYTKALSALFRTNMTSPWEDVVKVIREDLGAEPEELFGSIERTPLASASLAQVHRATArHTGAPLAVKVQHPNLREICDADMAAVAVAVKLAGWLFPDDFTLQ--WLLEEMKVYLPRELDFESEAETSNDVAASSRAparxgaalADAVVVPGVVHSLTTPRVLTMTFEEGCSVTDIDALRKMNISPSLVTKLLCETFCSQIFLGNFVHCDPHPGNVLIRQHPNCA 477
                 3333333345556667776.588*************************************************88888********************973788**********************************9987665..689*******************9999887665222222225789***********************************************************************996554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (672 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       143  (0.034861); expected 82.0 (0.02)
Passed bias filter:                      103  (0.0251097); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.15s 00:00:00.57 Elapsed: 00:00:00.64
# Mc/sec: 1385.89
//
Query:       MMETSP1137-20121227|9893_1  [L=314]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (314 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       110  (0.0268162); expected 82.0 (0.02)
Passed bias filter:                       34  (0.00828864); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.16s 00:00:00.42 Elapsed: 00:00:00.36
# Mc/sec: 1151.24
//
Query:       MMETSP1137-20121227|9895_1  [L=228]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (228 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        68  (0.0165773); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.17s 00:00:00.36 Elapsed: 00:00:00.32
# Mc/sec: 940.42
//
Query:       MMETSP1137-20121227|9896_1  [L=130]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (130 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       127  (0.0309605); expected 82.0 (0.02)
Passed bias filter:                      118  (0.0287665); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.15s 00:00:00.31 Elapsed: 00:00:00.28
# Mc/sec: 612.81
//
Query:       MMETSP1137-20121227|9897_1  [L=569]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (569 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        73  (0.0177962); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.17s 00:00:00.56 Elapsed: 00:00:00.54
# Mc/sec: 1390.77
//
Query:       MMETSP1137-20121227|9898_1  [L=157]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00014   19.3   0.3       0.18    9.1   0.0    2.1  2  TIGR00646 MG010: DNA primase-like protein
     0.0016   16.5   1.4       0.47    8.6   0.0    3.1  3  TIGR03798 ocin_TIGR03798: nif11-like leader peptide domain
     0.0077   13.6   0.3      0.017   12.5   0.0    1.7  1  TIGR00084 ruvA: Holliday junction DNA helicase RuvA
     0.0091   13.9   0.7      0.012   13.5   0.5    1.2  1  TIGR01453 grpIintron_endo: group I intron endonuclease
  ------ inclusion threshold ------
      0.058   11.3   0.3      0.058   11.3   0.2    2.8  3  TIGR01639 P_fal_TIGR01639: Plasmodium falciparum uncharacterized domain TIGR01639
      0.061    9.5   5.4       0.07    9.3   3.8    1.2  1  TIGR01865 cas_Csn1: CRISPR-associated protein Cas9/Csn1, subtype II/NMEMI


Domain annotation for each model (and alignments):
>> TIGR00646  MG010: DNA primase-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.1   0.0   0.00026      0.18     150     197 ..      14      61 ..       8      64 .. 0.90
   2 !    8.6   0.0   0.00039      0.27     152     183 ..      89     120 ..      75     135 .. 0.84

  Alignments for each domain:
  == domain 1    score: 9.1 bits;  conditional E-value: 0.00026
   TIGR00646 150 kqkkikkvvlcldndlagkvaaknlkeilkkagfivkvvelkakvkdw 197
                 +++ i+  +  +d d +g   ak+lk  ++  gf  k  e+k  + d 
  MMETSP1137-20121227|9898_1  14 QKQEIREAFDLFDTDGSGTIDAKELKVAMRALGFEPKKEEIKKMISDI 61 
                 56789999999*******************************998885 PP

  == domain 2    score: 8.6 bits;  conditional E-value: 0.00039
   TIGR00646 152 kkikkvvlcldndlagkvaaknlkeilkkagf 183
                 + i k +  +d+d +gk + knlk++ k+ g 
  MMETSP1137-20121227|9898_1  89 EEILKAFRLFDDDETGKISFKNLKRVAKELGE 120
                 67889999******************998875 PP

>> TIGR03798  ocin_TIGR03798: nif11-like leader peptide domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.6   0.0   0.00069      0.47      34      53 ..      40      59 ..      32      73 .. 0.80
   2 ?   -0.7   0.0      0.55   3.8e+02      19      34 ..      78      93 ..      68      96 .. 0.58
   3 !    5.3   0.1    0.0072       4.9      35      54 ..     114     139 ..     106     153 .. 0.59

  Alignments for each domain:
  == domain 1    score: 8.6 bits;  conditional E-value: 0.00069
   TIGR03798 34 aiakeaGFefteedleeaqa 53
                 + ++ GFe ++e++++ ++
  MMETSP1137-20121227|9898_1 40 VAMRALGFEPKKEEIKKMIS 59
                67899**********99877 PP

  == domain 2    score: -0.7 bits;  conditional E-value: 0.55
   TIGR03798 19 Lreklkaaespedrva 34
                +  k+++  s+e++++
  MMETSP1137-20121227|9898_1 78 MTAKMSEKDSREEILK 93
                4445555555555555 PP

  == domain 3    score: 5.3 bits;  conditional E-value: 0.0072
   TIGR03798  35 iakeaGFefteedleeaqa......s 54 
                  ake G ++t e+l+e +       +
  MMETSP1137-20121227|9898_1 114 VAKELGENMTDEELQEMIDeadrdgD 139
                 55666666666666555444454544 PP

>> TIGR00084  ruvA: Holliday junction DNA helicase RuvA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.5   0.0   2.4e-05     0.017     142     174 ..      30      64 ..       7      79 .. 0.69

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 2.4e-05
   TIGR00084 142 aaeaaeeelleaLksLGykqk..eiqkalkkikek 174
                   + + +el  a+++LG+++k  ei+k+++ i + 
  MMETSP1137-20121227|9898_1  30 SGTIDAKELKVAMRALGFEPKkeEIKKMISDIDKD 64 
                 4455669***********754339*******9985 PP

>> TIGR01453  grpIintron_endo: group I intron endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   0.5   1.7e-05     0.012     124     192 ..      50     120 ..       2     135 .. 0.57

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 1.7e-05
   TIGR01453 124 hseetkakiskkklgek.nskfgkkhseetkkkiskkeaks..akkvnvydkenkllveFdsiaeaarelki 192
                 ++ee+k+ is+  ++ + + +f   + +   +k+s+k +++   k++ ++d+++   ++F++++++a+el+ 
  MMETSP1137-20121227|9898_1  50 KKEEIKKMISDIDKDGSgTIDFDE-FLQMMTAKMSEKDSREeiLKAFRLFDDDETGKISFKNLKRVAKELGE 120
                 344566666665554443333332.33333333344455556789*************************64 PP

>> TIGR01639  P_fal_TIGR01639: Plasmodium falciparum uncharacterized domain TIGR01639
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.1     0.057        39      12      24 ..      51      63 ..      50      66 .. 0.84
   2 ?   -3.5   0.1       3.8   2.6e+03       7      15 ..      83      91 ..      80      93 .. 0.65
   3 ?   11.3   0.2   8.6e-05     0.058       4      22 ..     116     134 ..     115     137 .. 0.86

  Alignments for each domain:
  == domain 1    score: 2.3 bits;  conditional E-value: 0.057
   TIGR01639 12 kEelnelinsLde 24
                kEe++++i+  d+
  MMETSP1137-20121227|9898_1 51 KEEIKKMISDIDK 63
                79******97765 PP

  == domain 2    score: -3.5 bits;  conditional E-value: 3.8
   TIGR01639  7 skkltkEel 15
                s k ++Ee+
  MMETSP1137-20121227|9898_1 83 SEKDSREEI 91
                556677776 PP

  == domain 3    score: 11.3 bits;  conditional E-value: 8.6e-05
   TIGR01639   4 ndlskkltkEelnelinsL 22 
                 ++l  ++t+Eel+e+i++ 
  MMETSP1137-20121227|9898_1 116 KELGENMTDEELQEMIDEA 134
                 578899**********985 PP

>> TIGR01865  cas_Csn1: CRISPR-associated protein Cas9/Csn1, subtype II/NMEMI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   3.8    0.0001      0.07     314     427 ..       4     116 ..       1     154 [. 0.79

  Alignments for each domain:
  == domain 1    score: 9.3 bits;  conditional E-value: 0.0001
   TIGR01865 314 qgetkilskeekqklld..elfkkkkkvtkkkrkllllkeeeifksvevegldkeekefnaslksyhklkkilkkkklldneknekileeivkiltlykdkelikkrkelykkvln 427
                 +g +++l++e+kq++ +  +lf +    t+++++l+ ++    f+  + e ++k  +    + +  +++ + l  + +  + ++++  eei+k++ l++d+e  k + +++k+v +
  MMETSP1137-20121227|9898_1   4 KGGKAELTEEQKQEIREafDLFDTDGSGTIDAKELKVAMRALGFEPKKEE-IKKMISDIDKDGSGTIDFDEFL--QMMTAKMSEKDSREEILKAFRLFDDDETGKISFKNLKRVAK 116
                 57889999*******99556999*999**999999999999999955554.4555577888889999999999..777777899******************55555555555543 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (157 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       311  (0.0758167); expected 82.0 (0.02)
Passed bias filter:                      210  (0.0511945); expected 82.0 (0.02)
Passed Vit filter:                        25  (0.00609459); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.25u 0.20s 00:00:00.45 Elapsed: 00:00:00.37
# Mc/sec: 560.06
//
Query:       MMETSP1137-20121227|9899_1  [L=311]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.3e-05   21.3   0.1      0.031   10.1   0.0    2.1  2  TIGR00870 trp: transient-receptor-potential calcium channel protein


Domain annotation for each model (and alignments):
>> TIGR00870  trp: transient-receptor-potential calcium channel protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.2   0.0   1.5e-05     0.061     132     156 ..     136     160 ..     126     166 .. 0.90
   2 !   10.1   0.0   7.6e-06     0.031     130     157 ..     167     194 ..     163     205 .. 0.90

  Alignments for each domain:
  == domain 1    score: 9.2 bits;  conditional E-value: 1.5e-05
   TIGR00870 132 italilAihkqnyeivklLlekgas 156
                  ++l +A+ +++ ++v+lLl +ga+
  MMETSP1137-20121227|9899_1 136 LSPLYIAVKNKSSNVVELLLSNGAD 160
                 59*********************97 PP

  == domain 2    score: 10.1 bits;  conditional E-value: 7.6e-06
   TIGR00870 130 kgitalilAihkqnyeivklLlekgasv 157
                 + +t+lilA+++ + e v+lLl+  a++
  MMETSP1137-20121227|9899_1 167 QEKTPLILAVEQSDPESVRLLLAANADI 194
                 578**********************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (311 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        76  (0.0185275); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.28u 0.17s 00:00:00.45 Elapsed: 00:00:00.38
# Mc/sec: 1080.23
//
Query:       MMETSP1137-20121227|9901_1  [L=245]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.6e-24   84.2   0.1    3.7e-24   83.7   0.1    1.2  1  TIGR00401 msrA: peptide-methionine (S)-S-oxide reductase


Domain annotation for each model (and alignments):
>> TIGR00401  msrA: peptide-methionine (S)-S-oxide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.7   0.1   9.1e-28   3.7e-24       3     146 ..      48     180 ..      46     186 .. 0.89

  Alignments for each domain:
  == domain 1    score: 83.7 bits;  conditional E-value: 9.1e-28
   TIGR00401   3 itfalGCfWgveklfrkidgvektkvGylngktenPtyeevCsgdt..ghaevvkveydpkvvsleeLldvffevidPttanrqgnDkGtqyrsgiyalsdedekaaeaskerlqesakykkkivteiekaenfyeaeeyhqqylk 146
                 +t+a+      e + + ++gv+  +vGy +gk   Pty++vCs+    ++ae +++ +dp + s+ee+++ ff+++d        +  G qy s+i+++++e++  a++  e + +         t++e+  +f+ ae yhq++l 
  MMETSP1137-20121227|9901_1  48 ATLAMXVILDPEAMMTALPGVVASRVGYCGGKEAGPTYKRVCSDPSfrDYAETIQIDFDPLRCSYEEVIQTFFRSHDYK------SHLGRQYASVIFYHTEEQHDCAQQMLESYTR-------ASTAVEACGDFWVAEAYHQKWLL 180
                 56666667777889999**************************864339***************************975......4689******************999998887.......5799****************984 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (245 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        88  (0.0214529); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.22u 0.14s 00:00:00.36 Elapsed: 00:00:00.39
# Mc/sec: 829.16
//
Query:       MMETSP1137-20121227|9903_1  [L=483]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (483 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        91  (0.0221843); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.16s 00:00:00.48 Elapsed: 00:00:00.33
# Mc/sec: 1931.84
//
Query:       MMETSP1137-20121227|9904_1  [L=449]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (449 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       317  (0.0772794); expected 82.0 (0.02)
Passed bias filter:                      186  (0.0453437); expected 82.0 (0.02)
Passed Vit filter:                        27  (0.00658216); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.18s 00:00:00.61 Elapsed: 00:00:00.49
# Mc/sec: 1209.45
//
Query:       MMETSP1137-20121227|9906_1  [L=612]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   2.5e-254  841.9  15.5     3e-254  841.6  10.8    1.1  1  TIGR01153 psbC: photosystem II 44 kDa subunit reaction center protein
   5.1e-107  355.8  12.4    2.4e-99  330.6   3.8    2.2  2  TIGR03041 PS_antenn_a_b: chlorophyll a/b binding light-harvesting protein
    2.8e-94  314.0   0.6    5.6e-94  313.0   0.4    1.5  1  TIGR01152 psbD: photosystem II D2 protein (photosystem q(a) protein)
    2.2e-20   70.6  19.2    1.5e-15   54.7  10.3    2.3  2  TIGR03039 PS_II_CP47: photosystem II chlorophyll-binding protein CP47
    2.8e-17   60.3   0.8    2.8e-17   60.3   0.6    1.7  2  TIGR01151 psbA: photosystem q(b) protein


Domain annotation for each model (and alignments):
>> TIGR01153  psbC: photosystem II 44 kDa subunit reaction center protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  841.6  10.8  3.7e-257    3e-254       1     432 []     168     599 ..     168     599 .. 1.00

  Alignments for each domain:
  == domain 1    score: 841.6 bits;  conditional E-value: 3.7e-257
   TIGR01153   1 yawwagnarlinlsgkllgahvahaglivfwagamllfevahftfdkplyeqglillphvatlgygvgtggevvdifpffvvgvlhlissavlglggiyhslagpeileeassffsldwkdknqmtnilgyhlillgvgalllvlkalffggvydtwapgggdvrlvtnptldpavifgyllkspfggegwiisvnslediigghiyvglvlivggifhivtkpfgwarrafiwsgeaylsyslgalslvgfiasayvwfnntaypsefygpteaeasqaqsftflvrdqrlganigaaqgptglgkylmrspsgeiifggetmrfwdlrgplleplrgpnglsldklqndiqpwqvrraaeymthaplaslnsvggvitevnsvnyvslrqwlaasqfvlaffllvghlwhagraraaaagfekgidrkte 432
                 +aww+gnarlin+sgkllgahvahagl+vfw+gam+lfevah++ +kplyeqg il+ph++tlg+gvg+ggev+d++pffvvgvlhlissavlg+gg+yhsl gp++lee+++ff++dw+dkn+mt+ilg+hlillg+g++llv+ka+f+gg+ydtwapgggdvr+vt+ptl+p +ifgy+lkspfgg+gwiisvn+led++gghi++g +++vggi+hi+tkpf warr+f+wsgeaylsysl+als++g+ as++vw+nntaypsef+gpt  easq+q+ftflvrdqrlgan+++aqgptglgkylmrspsgeiifggetmrfwd+r+p++eplrgpngl+l+k++ndiqpwq rraaeymthapl++lnsvggv+te+nsvnyvs+r wl++s+f+l+ffl vghlwhagraraaaagfekgi+r+ e
  MMETSP1137-20121227|9906_1 168 FAWWSGNARLINVSGKLLGAHVAHAGLMVFWCGAMTLFEVAHYIPEKPLYEQGCILIPHLTTLGWGVGPGGEVTDVYPFFVVGVLHLISSAVLGFGGVYHSLIGPDTLEESFPFFGYDWRDKNKMTTILGIHLILLGIGSFLLVAKACFVGGLYDTWAPGGGDVRIVTAPTLNPLIIFGYVLKSPFGGDGWIISVNNLEDLVGGHIWLGFLCVVGGIWHILTKPFAWARRTFVWSGEAYLSYSLAALSVMGLTASVFVWYNNTAYPSEFFGPTGPEASQSQAFTFLVRDQRLGANVASAQGPTGLGKYLMRSPSGEIIFGGETMRFWDMRAPWVEPLRGPNGLDLNKIRNDIQPWQERRAAEYMTHAPLGALNSVGGVATEINSVNYVSPRSWLTTSHFFLGFFLWVGHLWHAGRARAAAAGFEKGINRENE 599
                 8********************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************976 PP

>> TIGR03041  PS_antenn_a_b: chlorophyll a/b binding light-harvesting protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  330.6   3.8  2.9e-102   2.4e-99       1     265 [.     170     440 ..     170     457 .. 0.97
   2 !   29.3   0.4   1.4e-10   1.2e-07     285     316 ..     553     584 ..     542     591 .. 0.82

  Alignments for each domain:
  == domain 1    score: 330.6 bits;  conditional E-value: 2.9e-102
   TIGR03041   1 wwaGnarvtnrsgkfiaahvahaglivlaaGastlfelarydpslpmgeqglillphlaslGiGvdeagvvvdtypvvviavlhlilsavlgaggllhsllfeedleesevkkakkfkleWddpdkltfilGhhllllGlaaillvekar.ihGlyd...paigavrqv.eynldlaaifnhqld........flaidsledvvgGhaflallliaGgafhivtkqlgeakklkgkgllsaeavlsyslagialmaivaaffvavnttvyPvefyGep 265
                 ww+Gnar++n sgk+++ahvahagl+v+++Ga+tlfe+a+y p+ p++eqg il+phl +lG+Gv+ +g+v+d yp++v++vlhli+savlg gg++hsl+ +++lees    + +f ++W d++k+t+ilG+hl+llG++++llv+ka  ++Glyd   p  g vr v  ++l++  if++ l+        ++++++led+vgGh++l++l++ Gg++hi+tk++++a++ +   ++s+ea+lsysla+++ m++ a+ fv  n+t+yP ef+G++
  MMETSP1137-20121227|9906_1 170 WWSGNARLINVSGKLLGAHVAHAGLMVFWCGAMTLFEVAHYIPEKPLYEQGCILIPHLTTLGWGVGPGGEVTDVYPFFVVGVLHLISSAVLGFGGVYHSLIGPDTLEES----FPFFGYDWRDKNKMTTILGIHLILLGIGSFLLVAKACfVGGLYDtwaPGGGDVRIVtAPTLNPLIIFGYVLKspfggdgwIISVNNLEDLVGGHIWLGFLCVVGGIWHILTKPFAWARRTF---VWSGEAYLSYSLAALSVMGLTASVFVWYNNTAYPSEFFGPT 440
                 **********************************************************************************************************995....67***********************************99*****43345699****99*************99************************************************...***************************************85 PP

  == domain 2    score: 29.3 bits;  conditional E-value: 1.4e-10
   TIGR03041 285 gahtsrawlanvhfylgffflqGhlwhalral 316
                 + ++ r+wl++ hf+lgff+  Ghlwha ra+
  MMETSP1137-20121227|9906_1 553 NYVSPRSWLTTSHFFLGFFLWVGHLWHAGRAR 584
                 34799***********************9987 PP

>> TIGR01152  psbD: photosystem II D2 protein (photosystem q(a) protein)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  313.0   0.4   6.8e-97   5.6e-94     199     345 ..       1     147 [.       1     151 [. 0.99

  Alignments for each domain:
  == domain 1    score: 313.0 bits;  conditional E-value: 6.8e-97
   TIGR01152 199 mgvagvlgaallcaihgatventlfedgdgantfrafnptqaeetysmvtanrfwsqifgvafsnkrwlhffmlfvpvtglwmsaigvvglalnlraydfvsqeiraaedpefetfytknillnegirawmaaqdqphenlifpeev 345
                 mgvag+lg+allcaihgatventlfedgd+antfraf+ptq+eetysmvtanrfwsqifgvafsnkrwlhffmlfvpv+g+w+s++g+vglalnlr+ydfvsqe+raaedpefetfytkn llnegir+wmaaqdqphen+ifpee 
  MMETSP1137-20121227|9906_1   1 MGVAGILGGALLCAIHGATVENTLFEDGDAANTFRAFTPTQSEETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPVAGMWTSSLGIVGLALNLRSYDFVSQELRAAEDPEFETFYTKNNLLNEGIRSWMAAQDQPHENFIFPEEF 147
                 9************************************************************************************************************************************************96 PP

>> TIGR03039  PS_II_CP47: photosystem II chlorophyll-binding protein CP47
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.7  10.3   1.8e-18   1.5e-15       2     275 ..     167     444 ..     166     470 .. 0.75
   2 !   17.9   0.1   2.5e-07   0.00021     420     476 ..     530     584 ..     521     603 .. 0.78

  Alignments for each domain:
  == domain 1    score: 54.7 bits;  conditional E-value: 1.8e-18
   TIGR03039   2 glpwyrvhtvvindpgrliavhlmhtalvagwagsmalyelaifdpsdavlnpmwrqgmyvlpfmarlgvteswsgwsitgetavdpgfwsfegvaaahivlsgllllaavwhwvywdlelfrd.prtgepald...lpkifgihlllsgllcfgfga..fhlsglf...gpglwvsdpyg...............ltgsvepvapewgadgf..npfnpggivahhiaagivgilaglfhllvrpperlykalrlgnietvlasalaavlfaafvvagtlwygsattpvelfgptryqw 275
                 g+ w+   + +in  g+l+ +h+ h+ l+  w+g+m+l+e+a + p+     p++ qg  ++p ++ lg       w +  + +v   ++ f  v + h++ s +l +  v+h       l +  p  g    d   +  i+gihl+l g+  f + a    + gl+   +pg       g               + g v +    +g dg+     n   +v  hi  g + +++g++h+l++p     +++ + + e+ l+ +laa+ ++ +  +  +wy +++ p e+fgpt    
  MMETSP1137-20121227|9906_1 167 GFAWWSGNARLINVSGKLLGAHVAHAGLMVFWCGAMTLFEVAHYIPEK----PLYEQGCILIPHLTTLG-------WGVGPGGEVT-DVYPFFVVGVLHLISSAVLGFGGVYHSLIGPDTLEESfPFFGYDWRDknkMTTILGIHLILLGIGSFLLVAkaCFVGGLYdtwAPG-------GgdvrivtaptlnpliIFGYVLK--SPFGGDGWiiSVNNLEDLVGGHIWLGFLCVVGGIWHILTKPFAWARRTF-VWSGEAYLSYSLAALSVMGLTASVFVWYNNTAYPSEFFGPTGPEA 444
                 78999999**************************************95....7899*********9986.......6665554444.356788899*****************87654333322233343333311167789********99998765114455554111232.......13333344444455447777765..45788886325678899************************99887776.5677************************************97544 PP

  == domain 2    score: 17.9 bits;  conditional E-value: 2.5e-07
   TIGR03039 420 yarkaqlgeifefdretldsdgvfrtsprgwftfahavfallflfghlwhgartlfr 476
                 y  +a lg +      + + + v   spr+w+t +h  ++++++ ghlwh+ r+  r
  MMETSP1137-20121227|9906_1 530 YMTHAPLGALNSVGGVATEINSVNYVSPRSWLTTSHFFLGFFLWVGHLWHAGRA--R 584
                 56666777777777777788899999*************************996..3 PP

>> TIGR01151  psbA: photosystem q(b) protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.3   0.6   3.4e-20   2.8e-17     200     304 ..       1     102 [.       1     127 [. 0.89
   2 ?   -3.7   0.1      0.96   7.9e+02     114     132 ..     561     579 ..     551     581 .. 0.80

  Alignments for each domain:
  == domain 1    score: 60.3 bits;  conditional E-value: 3.4e-20
   TIGR01151 200 lgvagvfggslfsamhgslvtsslirettenesanygykfgqeeetynivaahgyfgrlifqyasfnnsrslhfflaawpvvgiwftalgvstmafnlngfnfnq 304
                 +gvag++gg+l++a+hg+ v  +l  +  ++  +  ++   q eety +v+a  ++ + if   +f n r lhff+   pv g+w ++lg+  +a+nl  ++f  
  MMETSP1137-20121227|9906_1   1 MGVAGILGGALLCAIHGATVENTLFED-GDAANTFRAFTPTQSEETYSMVTANRFWSQ-IFGV-AFSNKRWLHFFMLFVPVAGMWTSSLGIVGLALNLRSYDFVS 102
                 69*******************999855.566777889999************988775.7775.69***********************************9964 PP

  == domain 2    score: -3.7 bits;  conditional E-value: 0.96
   TIGR01151 114 lvvlhfllgvacylgrewe 132
                 l   hf+lg + ++g  w 
  MMETSP1137-20121227|9906_1 561 LTTSHFFLGFFLWVGHLWH 579
                 5567999999999998885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (612 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        88  (0.0214529); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.42u 0.11s 00:00:00.53 Elapsed: 00:00:00.54
# Mc/sec: 1495.88
//
Query:       MMETSP1137-20121227|9907_1  [L=60]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        76  (0.0185275); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.28
# Mc/sec: 282.83
//
Query:       MMETSP1137-20121227|9908_1  [L=441]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0012   16.4   5.2        6.4    4.5   0.1    5.6  5  TIGR02167 Liste_lipo_26: bacterial surface protein 26-residue repeat


Domain annotation for each model (and alignments):
>> TIGR02167  Liste_lipo_26: bacterial surface protein 26-residue repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    2.1   0.0    0.0091        38       4      14 ..     126     136 ..     125     137 .. 0.87
   2 ?   -1.6   0.0      0.13   5.2e+02       4      12 ..     155     163 ..     154     164 .. 0.83
   3 !    2.1   0.0    0.0089        36       5      14 ..     251     260 ..     250     261 .. 0.86
   4 !    4.5   0.1    0.0016       6.6       7      15 ..     281     289 ..     280     289 .. 0.92
   5 !    4.5   0.1    0.0016       6.4       4      15 ..     335     346 ..     334     346 .. 0.83

  Alignments for each domain:
  == domain 1    score: 2.1 bits;  conditional E-value: 0.0091
   TIGR02167   4 gCssLtsLDlS 14 
                 ++ +Lts++l+
  MMETSP1137-20121227|9908_1 126 NNRALTSINLT 136
                 789******97 PP

  == domain 2    score: -1.6 bits;  conditional E-value: 0.13
   TIGR02167   4 gCssLtsLD 12 
                 ++++L+sL 
  MMETSP1137-20121227|9908_1 155 SNTALESLT 163
                 799****95 PP

  == domain 3    score: 2.1 bits;  conditional E-value: 0.0089
   TIGR02167   5 CssLtsLDlS 14 
                 + +Lts+D S
  MMETSP1137-20121227|9908_1 251 NQALTSIDFS 260
                 679*****99 PP

  == domain 4    score: 4.5 bits;  conditional E-value: 0.0016
   TIGR02167   7 sLtsLDlSn 15 
                 +L+s+DlSn
  MMETSP1137-20121227|9908_1 281 ALKSIDLSN 289
                 8*******9 PP

  == domain 5    score: 4.5 bits;  conditional E-value: 0.0016
   TIGR02167   4 gCssLtsLDlSn 15 
                 g+  LtsLDlS+
  MMETSP1137-20121227|9908_1 335 GNQTLTSLDLSG 346
                 6778******95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (441 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        92  (0.0224281); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.31u 0.16s 00:00:00.47 Elapsed: 00:00:00.35
# Mc/sec: 1663.06
//
Query:       MMETSP1137-20121227|9909_1  [L=587]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (587 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       107  (0.0260848); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.12s 00:00:00.48 Elapsed: 00:00:00.63
# Mc/sec: 1229.80
//
Query:       MMETSP1137-20121227|9910_1  [L=46]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (46 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        23  (0.00560702); expected 82.0 (0.02)
Passed bias filter:                       23  (0.00560702); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.41
# Mc/sec: 148.09
//
Query:       MMETSP1137-20121227|9912_1  [L=294]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (294 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       239  (0.0582643); expected 82.0 (0.02)
Passed bias filter:                      139  (0.0338859); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.15s 00:00:00.41 Elapsed: 00:00:00.53
# Mc/sec: 732.17
//
Query:       MMETSP1137-20121227|9913_1  [L=162]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (162 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       140  (0.0341297); expected 82.0 (0.02)
Passed bias filter:                      113  (0.0275475); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.14s 00:00:00.32 Elapsed: 00:00:00.42
# Mc/sec: 509.10
//
Query:       MMETSP1137-20121227|9916_1  [L=582]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (582 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       179  (0.0436373); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.14s 00:00:00.52 Elapsed: 00:00:00.52
# Mc/sec: 1477.26
//
Query:       MMETSP1137-20121227|9917_1  [L=389]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.8e-47  159.2   0.0    3.9e-46  155.4   0.0    2.2  1  TIGR00027 mthyl_TIGR00027: putative methyltransferase, TIGR00027 family


Domain annotation for each model (and alignments):
>> TIGR00027  mthyl_TIGR00027: putative methyltransferase, TIGR00027 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  155.4   0.0   9.4e-50   3.9e-46       2     199 ..     122     306 ..     121     321 .. 0.91

  Alignments for each domain:
  == domain 1    score: 155.4 bits;  conditional E-value: 9.4e-50
   TIGR00027   2 ktAlgvaaarAleterpdrlvrDplAaaflsaagrlrldskleaeaeaeekelggladfvavRtrffDdflleavaagvrqvViLgAGlDtRAyRldwpegtrvFEvDqpevlefKekvlkelgaeppahrraVavDlr..qdwpaaLaaaGfdaeaptawlaeGllvYLteeavdallafiaelsapGSrlafdvvek..l 199
                  tA + aa r  e++rpd l++Dpl +++++++gr    + +        ++      +++ Rtrf Dd+l e  a+g+rq+ViLgAG+D+RAyR++ + +++vFEvDq+   ++Ke  l+ +   +  +r++V ++++   +w a L a+Gfd++apt+wl eGll+YL+++   al++ ++++sapGS +  d+v++  l
  MMETSP1137-20121227|9917_1 122 YTARMCAASRWEESQRPDFLFYDPLSYKLAGEEGR----RSP-------MGS-----WIMVPRTRFGDDLLREMYAHGCRQLVILGAGMDSRAYRMAGLGDLHVFEVDQQTIFDVKEPLLA-HEPLAVRRRHVVGTEFTerGRWVADLEASGFDRTAPTLWLLEGLLMYLSHDDTLALIQDVGAVSAPGSAVFHDAVSAsyL 306
                 69*******************************93....111.......122.....25788***********************************************************.6777778999******96668****************************************************9976544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (389 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       110  (0.0268162); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.28u 0.15s 00:00:00.43 Elapsed: 00:00:00.45
# Mc/sec: 1140.97
//
Query:       MMETSP1137-20121227|9918_1  [L=348]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.7e-31  106.1   0.2    4.3e-16   56.3   0.0    2.2  2  TIGR03591 polynuc_phos: polyribonucleotide nucleotidyltransferase
      5e-31  105.6   1.8    3.1e-30  103.0   0.1    2.4  2  TIGR00717 rpsA: ribosomal protein S1
    1.5e-18   64.4   1.4    2.9e-09   33.7   0.0    2.9  3  TIGR02696 pppGpp_PNP: guanosine pentaphosphate synthetase I/polyribonucleotide nucleotidyltransferase
    8.9e-15   51.8   3.9      1e-07   28.5   0.3    2.6  2  TIGR02063 RNase_R: ribonuclease R
    1.7e-09   34.4   0.3    4.1e-05   19.9   0.1    2.3  2  TIGR00358 3_prime_RNase: VacB and RNase II family 3'-5' exoribonucleases
    1.1e-08   32.8   3.8    0.00069   17.1   0.2    3.1  2  TIGR00448 rpoE: DNA-directed RNA polymerase
     0.0033   14.3   0.2      0.032   11.1   0.0    2.0  2  TIGR01953 NusA: transcription termination factor NusA
     0.0038   14.0   0.2     0.0096   12.7   0.2    1.6  1  TIGR00757 RNaseEG: ribonuclease, Rne/Rng family


Domain annotation for each model (and alignments):
>> TIGR03591  polynuc_phos: polyribonucleotide nucleotidyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.8   0.0   3.1e-16   1.6e-13     613     687 ..      86     161 ..      68     163 .. 0.92
   2 !   56.3   0.0   8.4e-19   4.3e-16     619     681 ..     191     253 ..     183     261 .. 0.88

  Alignments for each domain:
  == domain 1    score: 47.8 bits;  conditional E-value: 3.1e-16
   TIGR03591 613 taevevgkvyegkvvkiadfgafvellpgkdglvhiSelaeervekvedvlkegdevkvkvleid.kkgrvklsrk 687
                 ++e  vg++ eg++ +++++gafv++ + +dgl+hiSe+++  ve+  +++k+gd+v+v++ +++ +k++v ls k
  MMETSP1137-20121227|9918_1  86 IEELTVGSTVEGTIRSVQSYGAFVNVGSTTDGLLHISEMSDGFVEDAASMFKVGDKVSVRIKSVNlEKNQVALSCK 161
                 57889**********************************************************9945899999987 PP

  == domain 2    score: 56.3 bits;  conditional E-value: 8.4e-19
   TIGR03591 619 gkvyegkvvkiadfgafvellpgkdglvhiSelaeervekvedvlkegdevkvkvleidkkgr 681
                  +  +g+v +i+ +gaf++l +g dglvhiS +aeer+ekved+l eg+ev+v+++++dk+ r
  MMETSP1137-20121227|9918_1 191 KEFITGTVNSITAYGAFITLKEGVDGLVHISAIAEERLEKVEDKLAEGQEVQVRIVSFDKEKR 253
                 67789******************************************************8543 PP

>> TIGR00717  rpsA: ribosomal protein S1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  103.0   0.1     6e-33   3.1e-30     179     342 ..      83     259 ..      73     261 .. 0.85
   2 ?   -1.4   0.1      0.27   1.4e+02      46      84 ..     300     339 ..     296     345 .. 0.66

  Alignments for each domain:
  == domain 1    score: 103.0 bits;  conditional E-value: 6e-33
   TIGR00717 179 eelleklkegeevkGvVknitdfgafvdlgg.vdgllhitdlswkrvkhPseivevgdevkvkvikvDkekkrislslkqlkedP...........Weeie..kkfkvgkkikgkvtnladyGvfveieegiEGlvhvsElsWekknskPskvvkvGdevevkvleideerrrvslsl 342
                    +e+l+ g++v+G +++++++gafv++g+  dgllhi+++s + v+    + +vgd+v v++++v  ek++++ls k  ++ P            ++++  ++  + + i+g v  ++ yG+f+ ++eg++Glvh+s ++ e++ +k ++ +  G+ev+v +++ d+e+rr+ ls+
  MMETSP1137-20121227|9918_1  83 RTPIEELTVGSTVEGTIRSVQSYGAFVNVGStTDGLLHISEMSDGFVEDAASMFKVGDKVSVRIKSVNLEKNQVALSCKSEETAPpprrgggsgkgRADLSefENADPKEFITGTVNSITAYGAFITLKEGVDGLVHISAIA-EERLEKVEDKLAEGQEVQVRIVSFDKEKRRLGLSM 259
                 45689************************97369*********************************************99988833433333332122321134566789******************************9.56677799***********************9996 PP

  == domain 2    score: -1.4 bits;  conditional E-value: 0.27
   TIGR00717  46 ipveefedaqlelq.vgdevevvlervedregetvlsrek 84 
                 ++ ee+e+  l+++  gdev+v+ ++ +  e   +++++k
  MMETSP1137-20121227|9918_1 300 LSSEEVEKLTLDFEaDGDEVSVFAQALKRAELVKEKKAKK 339
                 6788999988777526999999999888744433333332 PP

>> TIGR02696  pppGpp_PNP: guanosine pentaphosphate synthetase I/polyribonucleotide nucleotidyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.4   0.0   8.9e-10   4.6e-07     647     711 ..      90     150 ..      61     159 .. 0.86
   2 !   33.7   0.0   5.7e-12   2.9e-09     653     713 ..     195     251 ..     185     259 .. 0.87
   3 ?    1.7   0.0     0.027        14     517     553 ..     296     330 ..     286     338 .. 0.80

  Alignments for each domain:
  == domain 1    score: 26.4 bits;  conditional E-value: 8.9e-10
   TIGR02696 647 evgerflgtvvkttafgafvsllpgkdgllhiseirkladgkrvekvedvlsvgekikveiadid 711
                 +vg+   gt+    ++gafv +    dgllhis   +++dg  ve+   + +vg+k+ v i+ ++
  MMETSP1137-20121227|9918_1  90 TVGSTVEGTIRSVQSYGAFVNVGSTTDGLLHIS---EMSDG-FVEDAASMFKVGDKVSVRIKSVN 150
                 69*******************************...78888.69*****************9986 PP

  == domain 2    score: 33.7 bits;  conditional E-value: 5.7e-12
   TIGR02696 653 lgtvvkttafgafvsllpgkdgllhiseirkladgkrvekvedvlsvgekikveiadiddr 713
                  gtv   ta+gaf++l  g dgl+his i      +r+ekved l+ g+ ++v i   d+ 
  MMETSP1137-20121227|9918_1 195 TGTVNSITAYGAFITLKEGVDGLVHISAIA----EERLEKVEDKLAEGQEVQVRIVSFDKE 251
                 69*************************654....589*******************99964 PP

  == domain 3    score: 1.7 bits;  conditional E-value: 0.027
   TIGR02696 517 mdfkvagtrefvtalqldtkldgipaevlaealkqak 553
                   fk   ++e v  l ld   dg   +v+a+alk+a+
  MMETSP1137-20121227|9918_1 296 SAFK--LSSEEVEKLTLDFEADGDEVSVFAQALKRAE 330
                 3344..45788999********************997 PP

>> TIGR02063  RNase_R: ribonuclease R
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.5   0.3     2e-10     1e-07     627     708 ..      90     159 ..      86     162 .. 0.89
   2 !   23.8   0.2   5.4e-09   2.8e-06     633     709 ..     195     259 ..     191     261 .. 0.80

  Alignments for each domain:
  == domain 1    score: 28.5 bits;  conditional E-value: 2e-10
   TIGR02063 627 kiGeefegvissvtsfGlFveLeentieGLvhissLkddyyefdeknlalvGertgkvfrlGdevkvkvvevdkeekkidfe 708
                  +G++ eg i sv s+G Fv++   t +GL his+++d  ++          e    +f++Gd+v v++ +v++e++++ ++
  MMETSP1137-20121227|9918_1  90 TVGSTVEGTIRSVQSYGAFVNVGS-TTDGLLHISEMSDG-FV----------EDAASMFKVGDKVSVRIKSVNLEKNQVALS 159
                 69*********************9.***********965.44..........344568*******************99876 PP

  == domain 2    score: 23.8 bits;  conditional E-value: 5.4e-09
   TIGR02063 633 egvissvtsfGlFveLeentieGLvhissLkddyyefdeknlalvGertgkvfrlGdevkvkvvevdkeekkidfel 709
                  g + s+t++G F++L+e  ++GLvhis++ ++  e  e++l             G+ev+v++v+ dke++++ +++
  MMETSP1137-20121227|9918_1 195 TGTVNSITAYGAFITLKE-GVDGLVHISAIAEERLEKVEDKL-----------AEGQEVQVRIVSFDKEKRRLGLSM 259
                 699***************.************87655444433...........348888888888888888887776 PP

>> TIGR00358  3_prime_RNase: VacB and RNase II family 3'-5' exoribonucleases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.1     8e-08   4.1e-05     575     654 ..      91     158 ..      88     160 .. 0.90
   2 !   12.3   0.0   1.6e-05     0.008     580     619 ..     195     233 ..     187     257 .. 0.83

  Alignments for each domain:
  == domain 1    score: 19.9 bits;  conditional E-value: 8e-08
   TIGR00358 575 vgeeFegvissvtrfGlfvrldengidglikistlendyyvfdkeklaligkkegkvykigDrvevkleevkleersiil 654
                 vg++ eg i sv + G fv++   + dgl++is +++ ++           +    ++k+gD+v+v+++ v+le+ ++ l
  MMETSP1137-20121227|9918_1  91 VGSTVEGTIRSVQSYGAFVNVG-STTDGLLHISEMSDGFV-----------EDAASMFKVGDKVSVRIKSVNLEKNQVAL 158
                 899*****************99.999*********99875...........445578****************9998876 PP

  == domain 2    score: 12.3 bits;  conditional E-value: 1.6e-05
   TIGR00358 580 egvissvtrfGlfvrldengidglikistlendyyvfdke 619
                  g ++s+t  G f+ l+  g+dgl++is + ++ +   ++
  MMETSP1137-20121227|9918_1 195 TGTVNSITAYGAFITLK-EGVDGLVHISAIAEERLEKVED 233
                 699**************.79***********987654444 PP

>> TIGR00448  rpoE: DNA-directed RNA polymerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.2   1.3e-06   0.00069      83     155 ..      93     155 ..      88     167 .. 0.82
   2 !   14.4   0.2   8.9e-06    0.0045      82     120 ..     191     230 ..     187     272 .. 0.77

  Alignments for each domain:
  == domain 1    score: 17.1 bits;  conditional E-value: 1.3e-06
   TIGR00448  83 eiveGevieivefGafvslGp.lddllhvsqvlddyvvydpkkealigketkkvldvgdkvrarivalslkerk 155
                   veG +  +  +Gafv++G   d+llh+s++ d +v           +++  +++vgdkv +ri ++ l +++
  MMETSP1137-20121227|9918_1  93 STVEGTIRSVQSYGAFVNVGStTDGLLHISEMSDGFV-----------EDAASMFKVGDKVSVRIKSVNLEKNQ 155
                 579****************9637*********98876...........45667888999999999888887655 PP

  == domain 2    score: 14.4 bits;  conditional E-value: 8.9e-06
   TIGR00448  82 qeiveGevieivefGafvsl.Gplddllhvsqvlddyvvy 120
                 +e ++G v  i+++Gaf+ l   +d+l+h+s + ++ +  
  MMETSP1137-20121227|9918_1 191 KEFITGTVNSITAYGAFITLkEGVDGLVHISAIAEERLEK 230
                 699****************72569*********9987754 PP

>> TIGR01953  NusA: transcription termination factor NusA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.1   0.0   6.2e-05     0.032     131     197 ..      91     162 ..      79     166 .. 0.85
   2 ?    0.9   0.0     0.075        38     131     188 ..     190     254 ..     179     259 .. 0.72

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 6.2e-05
   TIGR01953 131 vgeiisgkvervkkeevlvel.gkteallpkkeqipg......ekfklgdkikvlvkevkkekkgakiilSrts 197
                 vg +++g++  v+  + +v++  +t++ll  +e++ g      + fk+gdk+ v +k v+ ek+  ++ lS +s
  MMETSP1137-20121227|9918_1  91 VGSTVEGTIRSVQSYGAFVNVgSTTDGLLHISEMSDGfvedaaSMFKVGDKVSVRIKSVNLEKN--QVALSCKS 162
                 7899*****************88899*******997544333378****************999..66666555 PP

  == domain 2    score: 0.9 bits;  conditional E-value: 0.075
   TIGR01953 131 vgeiisgkvervkkeevlvel.......gkteallpkkeqipgekfklgdkikvlvkevkkekkg 188
                  +e i+g+v+     + ++ l        ++ a+  ++    ++k++ g++++v ++ + kek+ 
  MMETSP1137-20121227|9918_1 190 PKEFITGTVNSITAYGAFITLkegvdglVHISAIAEERLEKVEDKLAEGQEVQVRIVSFDKEKRR 254
                 47899999999999998888875555444555555555566678899999999999999998875 PP

>> TIGR00757  RNaseEG: ribonuclease, Rne/Rng family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.7   0.2   1.9e-05    0.0096      36      96 ..      97     246 ..      84     255 .. 0.72

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 1.9e-05
   TIGR00757  36 rvlpslqa..aFvdigeekegflhlsdilknsekle...............paeakreae...............................................................................kkieellkegqevlVQvv 96 
                   ++s+q+  aFv++g++ +g+lh+s++     + +                                                                                                       +k+e++l egqev V +v
  MMETSP1137-20121227|9918_1  97 GTIRSVQSygAFVNVGSTTDGLLHISEMSDGFVEDAasmfkvgdkvsvrikS-------VnleknqvalsckseetappprrgggsgkgradlsefenadpkefitgtvnsitaygafitlkegvdglvhisaiaeerlEKVEDKLAEGQEVQVRIV 246
                 44555554339****************9976443334455555555555441.......04455555666666666777777777777777777777788888888888888888888888899999999999999888999999999999988775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (348 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       175  (0.0426621); expected 82.0 (0.02)
Passed bias filter:                      147  (0.0358362); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         8  (0.00195027); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.40u 0.18s 00:00:00.58 Elapsed: 00:00:00.44
# Mc/sec: 1043.91
//
Query:       MMETSP1137-20121227|9919_1  [L=346]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.7e-05   20.0   0.0    8.8e-05   19.3   0.0    1.3  1  TIGR03466 HpnA: hopanoid-associated sugar epimerase
     0.0003   18.3   0.0     0.0011   16.5   0.0    1.8  2  TIGR01777 yfcH: TIGR01777 family protein
     0.0078   12.9   0.0      0.012   12.3   0.0    1.2  1  TIGR02823 oxido_YhdH: putative quinone oxidoreductase, YhdH/YhfP family
  ------ inclusion threshold ------
      0.014   12.5   0.0      0.018   12.1   0.0    1.1  1  TIGR01850 argC: N-acetyl-gamma-glutamyl-phosphate reductase
      0.016   12.6   0.4      0.042   11.2   0.2    1.7  2  TIGR00036 dapB: dihydrodipicolinate reductase
       0.02   11.8   0.0      0.027   11.4   0.0    1.2  1  TIGR01296 asd_B: aspartate-semialdehyde dehydrogenase


Domain annotation for each model (and alignments):
>> TIGR03466  HpnA: hopanoid-associated sugar epimerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.0   1.3e-07   8.8e-05       3      52 ..      21      72 ..      19      97 .. 0.70

  Alignments for each domain:
  == domain 1    score: 19.3 bits;  conditional E-value: 1.3e-07
   TIGR03466  3 vlvtGatGFvGsavvrllleeGeevrvlvrktsdrrnl..eeldvEiveGdl 52
                v v GatG  G+ vv++l+  G++vr+lvr+  ++++   ++ +vE+ + d+
  MMETSP1137-20121227|9919_1 21 VAVVGATGRTGQLVVKALEXXGHSVRALVRNREKAQETlpSSPNVECKVIDF 72
                6799**************************9988776412344555555554 PP

>> TIGR01777  yfcH: TIGR01777 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0   1.6e-06    0.0011       1      40 [.      21      60 ..      21      91 .. 0.86
   2 ?   -0.9   0.0      0.31   2.1e+02      60      83 ..     130     153 ..     112     184 .. 0.85

  Alignments for each domain:
  == domain 1    score: 16.5 bits;  conditional E-value: 1.6e-06
   TIGR01777  1 vlitGgtGliGralveelekkghevviltrskekekeekk 40
                v++ G+tG  G+ +v++le  gh+v++l+r++ek++e+  
  MMETSP1137-20121227|9919_1 21 VAVVGATGRTGQLVVKALEXXGHSVRALVRNREKAQETLP 60
                6899*****************************8887764 PP

  == domain 2    score: -0.9 bits;  conditional E-value: 0.31
   TIGR01777  60 avinLaGepiadkrwteerkkeil 83 
                  v+ L+ ++++ + w e++k++++
  MMETSP1137-20121227|9919_1 130 KVVLLSSAGVTRTSWDEDKKQRLI 153
                 57889999999999***9999876 PP

>> TIGR02823  oxido_YhdH: putative quinone oxidoreductase, YhdH/YhfP family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.3   0.0   1.8e-05     0.012     148     183 ..      20      55 ..       2      62 .. 0.85

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 1.8e-05
   TIGR02823 148 evlVtGAtGgVgslavalLsklGyevvavtgkkeee 183
                 +v V GAtG  g+l v+ L+  G++v a + ++e++
  MMETSP1137-20121227|9919_1  20 NVAVVGATGRTGQLVVKALEXXGHSVRALVRNREKA 55 
                 699************************987666554 PP

>> TIGR01850  argC: N-acetyl-gamma-glutamyl-phosphate reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   2.7e-05     0.018       2      87 ..      20     107 ..      19     113 .. 0.73

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 2.7e-05
   TIGR01850   2 kvaivGasGYtGaeLlrllakHpevevtklvssreagkklsevhphlkglvd.lkleelee.eeileead.vvflAlphgvsaelvpel 87 
                 +va+vGa+G tG+ +++ l+   +   + lv +re+ ++     p+++ +v     ++ ee  +++e +d +vf+A+    s + v+++
  MMETSP1137-20121227|9919_1  20 NVAVVGATGRTGQLVVKALEXXGHSVRA-LVRNREKAQETLPSSPNVECKVIdFCXAPAEEvLSACEGMDrLVFCATGXTESGDSVDQI 107
                 79*****************998776655.899999777777788888877653444433334344555555899999999998888765 PP

>> TIGR00036  dapB: dihydrodipicolinate reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.2   6.1e-05     0.042       2      27 ..      19      43 ..      18      75 .. 0.76
   2 ?   -0.6   0.0      0.25   1.7e+02      60     109 ..      51     100 ..      39     107 .. 0.71

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 6.1e-05
   TIGR00036  2 ikvavaGaaGrmGrevikavkeaedl 27
                ++vav Ga+Gr G+ v+ka++     
  MMETSP1137-20121227|9919_1 19 LNVAVVGATGRTGQLVVKALEXXG-H 43
                68*****************98843.3 PP

  == domain 2    score: -0.6 bits;  conditional E-value: 0.25
   TIGR00036  60 ddleavkvla.ekkadv.liDfttpeavlenvkialekgvrlVvGTTGfsee 109
                 +  +a+++l    ++++ +iDf  + a  e+v +a e   rlV   TG +e 
  MMETSP1137-20121227|9919_1  51 NREKAQETLPsSPNVECkVIDFCXAPA--EEVLSACEGMDRLVFCATGXTES 100
                 555555555443344444799988765..778889999999******99986 PP

>> TIGR01296  asd_B: aspartate-semialdehyde dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   3.9e-05     0.027       1      30 [.      20      49 ..      20      96 .. 0.91

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 3.9e-05
   TIGR01296  1 nvaivGatGavGqellkvLeernfpidklv 30
                nva+vGatG+ Gq ++k Le     + +lv
  MMETSP1137-20121227|9919_1 20 NVAVVGATGRTGQLVVKALEXXGHSVRALV 49
                79******************9888777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (346 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        83  (0.020234); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.29u 0.16s 00:00:00.44 Elapsed: 00:00:00.35
# Mc/sec: 1304.81
//
Query:       MMETSP1137-20121227|9920_1  [L=324]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (324 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       151  (0.0368113); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.15s 00:00:00.41 Elapsed: 00:00:00.49
# Mc/sec: 872.74
//
Query:       MMETSP1137-20121227|9921_1  [L=97]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (97 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        87  (0.0212092); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.16s 00:00:00.32 Elapsed: 00:00:00.42
# Mc/sec: 304.83
//
Query:       MMETSP1137-20121227|9922_1  [L=177]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.7e-22   75.7   0.0    8.6e-22   74.8   0.0    1.4  2  TIGR00002 S16: ribosomal protein S16


Domain annotation for each model (and alignments):
>> TIGR00002  S16: ribosomal protein S16
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0      0.59   2.4e+03      55      63 ..      29      37 ..      12      39 .. 0.67
   2 !   74.8   0.0   2.1e-25   8.6e-22       2      77 ..      64     142 ..      63     143 .. 0.94

  Alignments for each domain:
  == domain 1    score: -3.5 bits;  conditional E-value: 0.59
   TIGR00002 55 kewlkkGaq 63
                +  l++Gaq
  MMETSP1137-20121227|9922_1 29 RAVLQEGAQ 37
                556788887 PP

  == domain 2    score: 74.8 bits;  conditional E-value: 2.1e-25
   TIGR00002   2 kirLarlGrkkrpvYrivvadsrskrdGkaieelGtynPvkkee...evkldverikewlkkGaqptetvkklLkkagv 77 
                  +rL+rlGr + pv+r+v+a ++s+rdGk +e+lGty+  ++ +   +++l+ve+i++w+  Ga+ te v++lL+ka++
  MMETSP1137-20121227|9922_1  64 ILRLQRLGRLHLPVFRLVAACNHSPRDGKHLEKLGTYHAQPDLNgvkHMSLKVEQIQKWIMRGARMTEPVMELLSKARI 142
                 58***********************************99888766779****************************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (177 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        51  (0.012433); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.18u 0.12s 00:00:00.30 Elapsed: 00:00:00.31
# Mc/sec: 753.62
//
Query:       MMETSP1137-20121227|9923_1  [L=306]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (306 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       101  (0.0246221); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.15s 00:00:00.40 Elapsed: 00:00:00.39
# Mc/sec: 1035.61
//
Query:       MMETSP1137-20121227|9924_1  [L=215]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (215 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       112  (0.0273038); expected 82.0 (0.02)
Passed bias filter:                      105  (0.0255973); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.14s 00:00:00.34 Elapsed: 00:00:00.36
# Mc/sec: 788.27
//
Query:       MMETSP1137-20121227|9925_1  [L=249]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (249 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       243  (0.0592394); expected 82.0 (0.02)
Passed bias filter:                      137  (0.0333983); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.14s 00:00:00.37 Elapsed: 00:00:00.43
# Mc/sec: 764.31
//
Query:       MMETSP1137-20121227|9926_1  [L=178]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.013   12.4   0.6      0.017   12.0   0.4    1.1  1  TIGR03019 pepcterm_femAB: FemAB-related protein, PEP-CTERM system-associated


Domain annotation for each model (and alignments):
>> TIGR03019  pepcterm_femAB: FemAB-related protein, PEP-CTERM system-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.4   4.2e-06     0.017      77     162 ..      27     114 ..      18     125 .. 0.82

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 4.2e-06
   TIGR03019  77 saevaealeaeAeklakelkvdhlElRnltpahselpake.lyvtfrkelaadeeallkaiprkqR..aqvrkgikagleseldgdldr 162
                 s++ a++l + A++l+ +l  +   +R ++++++++++++ ly  + k+l++++   + ++ +k R   q++k +k+ + ++ld ++++
  MMETSP1137-20121227|9926_1  27 SRDEATMLARVAAMLMGALLLG-CSIRVVAAEDEKMHTHKaLYTSLTKSLPQEKRPQFMELMKKMRltRQMKKEQKKAAIVQLDAEIHK 114
                 5666777777777777777665.579999999988877666************************955589*******99999988765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (178 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       285  (0.0694783); expected 82.0 (0.02)
Passed bias filter:                      173  (0.0421745); expected 82.0 (0.02)
Passed Vit filter:                        19  (0.00463189); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.22u 0.18s 00:00:00.40 Elapsed: 00:00:00.71
# Mc/sec: 330.90
//
Query:       MMETSP1137-20121227|9927_1  [L=34]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (34 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        21  (0.00511945); expected 82.0 (0.02)
Passed bias filter:                       21  (0.00511945); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.15s 00:00:00.26 Elapsed: 00:00:00.32
# Mc/sec: 140.24
//
Query:       MMETSP1137-20121227|9928_1  [L=131]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (131 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        39  (0.00950756); expected 82.0 (0.02)
Passed bias filter:                       39  (0.00950756); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.11s 00:00:00.27 Elapsed: 00:00:00.36
# Mc/sec: 480.29
//
Query:       MMETSP1137-20121227|9929_1  [L=322]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.11    9.5  13.9      0.047   10.7   7.3    1.9  1  TIGR00601 rad23: UV excision repair protein Rad23
        4.2    4.2  17.7          6    3.7  12.2    1.1  1  TIGR01554 major_cap_HK97: phage major capsid protein, HK97 family


Domain annotation for each model (and alignments):
>> TIGR00601  rad23: UV excision repair protein Rad23
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   7.3   2.3e-05     0.047      54     131 ..     158     231 ..     155     265 .. 0.63

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 2.3e-05
   TIGR00601  54 sDdktvkeykikekdfvvvmvskkKavkakaaePaatpesaptptpsatpasvaekksaaPasaveeessaeeeatat 131
                 sDd+   e + +e+df+ +mv k++ +k +a++Pa ++++ p +t   tp+s    ++aa ++a+e  ++++ ++   
  MMETSP1137-20121227|9929_1 158 SDDEESDEEESDEDDFLQMMVQKEQRSK-AATTPARSSRTTPRTT---TPSSGGRGTAAAGSAAAEAVTPTPLTTVGE 231
                 68888899999*************9999.7788887777666544...455555555555555444444443333222 PP

>> TIGR01554  major_cap_HK97: phage major capsid protein, HK97 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7  12.2    0.0029         6      17     113 ..     104     207 ..      90     213 .. 0.58

  Alignments for each domain:
  == domain 1    score: 3.7 bits;  conditional E-value: 0.0029
   TIGR01554  17 kltedekeeeaeeekkekdalkaeidkleaeierleeaaaeeeakeaasgeagkeeeeeeeakeeaaea...fraylrrgddalaee.......akalstgtdsdgG 113
                 ++ +d+ +++++e+++     +ae +++ea  e++ +++a++ + e++++e+g+ ee+++e+ +e+++    f +++ +++++++++       +++  t+t+s+gG
  MMETSP1137-20121227|9929_1 104 SARDDGADSADDEKQAL---SRAEGARMEAVNEAESAEKADAGEGEENEREEGEREESDDEESDEEESDeddFLQMMVQKEQRSKAAttparssRTTPRTTTPSSGG 207
                 55566666666666555...444444444444444444444444444444444444444444444443344799988888888887778888887777777778887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (322 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       126  (0.0307167); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.31u 0.16s 00:00:00.47 Elapsed: 00:00:00.59
# Mc/sec: 720.35
//
Query:       MMETSP1137-20121227|9930_1  [L=313]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (313 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        79  (0.0192589); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.12s 00:00:00.37 Elapsed: 00:00:00.37
# Mc/sec: 1116.56
//
Query:       MMETSP1137-20121227|9931_1  [L=187]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (187 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       232  (0.0565578); expected 82.0 (0.02)
Passed bias filter:                      131  (0.0319356); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.17s 00:00:00.37 Elapsed: 00:00:00.40
# Mc/sec: 617.05
//
Query:       MMETSP1137-20121227|9932_1  [L=135]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.2e-17   61.8   8.3    1.9e-17   61.1   5.7    1.3  1  TIGR00001 rpmI_bact: ribosomal protein L35


Domain annotation for each model (and alignments):
>> TIGR00001  rpmI_bact: ribosomal protein L35
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.1   5.7   4.8e-21   1.9e-17       2      61 ..      69     129 ..      68     131 .. 0.94

  Alignments for each domain:
  == domain 1    score: 61.1 bits;  conditional E-value: 4.8e-21
   TIGR00001   2 KmKTkkaaaKRFkvtgsGkikrkkagkrHlltkKsskrkRqLrkkalvsksdlkrvk.llL 61 
                 K K+ +a+ KRFk t++Gk++r+ka++ H+ltkK ++rk +Lr+++ v++++l+ ++ l+L
  MMETSP1137-20121227|9932_1  69 KAKSSSAVTKRFKATATGKLLRHKAFRAHILTKKHPQRKQRLRRTSAVDETQLDTMRkLML 129
                 9****************************************************99883554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (135 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       167  (0.0407118); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.16u 0.12s 00:00:00.28 Elapsed: 00:00:00.33
# Mc/sec: 539.96
//
Query:       MMETSP1137-20121227|9933_1  [L=238]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (238 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        42  (0.0102389); expected 82.0 (0.02)
Passed bias filter:                       39  (0.00950756); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.14s 00:00:00.33 Elapsed: 00:00:00.30
# Mc/sec: 1047.11
//
Query:       MMETSP1137-20121227|9934_1  [L=172]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (172 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       139  (0.0338859); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.15s 00:00:00.35 Elapsed: 00:00:00.68
# Mc/sec: 333.85
//
Query:       MMETSP1137-20121227|9935_1  [L=1107]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1107 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       159  (0.0387616); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.64u 0.16s 00:00:00.80 Elapsed: 00:00:00.61
# Mc/sec: 2395.28
//
Query:       MMETSP1137-20121227|9936_1  [L=254]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (254 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       142  (0.0346173); expected 82.0 (0.02)
Passed bias filter:                      103  (0.0251097); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.14s 00:00:00.38 Elapsed: 00:00:00.38
# Mc/sec: 882.24
//
Query:       MMETSP1137-20121227|9937_1  [L=69]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (69 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       128  (0.0312043); expected 82.0 (0.02)
Passed bias filter:                      104  (0.0253535); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.21s 00:00:00.31 Elapsed: 00:00:00.38
# Mc/sec: 239.66
//
Query:       MMETSP1137-20121227|9938_1  [L=137]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (137 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        75  (0.0182838); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.20s 00:00:00.35 Elapsed: 00:00:00.28
# Mc/sec: 623.53
//
Query:       MMETSP1137-20121227|9940_1  [L=367]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (367 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       100  (0.0243784); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.27s 00:00:00.43 Elapsed: 00:00:00.43
# Mc/sec: 1126.51
//
Query:       MMETSP1137-20121227|9941_1  [L=138]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.022   12.5   0.0      0.028   12.1   0.0    1.1  1  TIGR02761 TraE_TIGR: type IV conjugative transfer system protein TraE


Domain annotation for each model (and alignments):
>> TIGR02761  TraE_TIGR: type IV conjugative transfer system protein TraE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   6.9e-06     0.028     104     171 ..       8      76 ..       4      81 .. 0.88

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 6.9e-06
   TIGR02761 104 nyeqikerlvkea.eeikkenassvFypksvevsiqeltVkvkGhlkrfvggrtlsderktyllrlsys 171
                 ny+ ++++l++++ e+ +ke ++s F   s  +  + + + ++  lkr v ++ l++++k +++r+ + 
  MMETSP1137-20121227|9941_1   8 NYASARNLLARDEsEQNAKELMNSNFRLRSGLIRLRSGLIRLRSGLKRSVTAERLASTKKSVSVRVVIH 76 
                 8999*****9876166677789******************************************98765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (138 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        81  (0.0197465); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.09u 0.23s 00:00:00.32 Elapsed: 00:00:00.38
# Mc/sec: 479.33
//
Query:       MMETSP1137-20121227|9942_1  [L=250]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.2e-67  224.8   0.2    1.4e-67  224.4   0.2    1.2  1  TIGR00980 3a0801so1tim17: mitochondrial import inner membrane translocase subunit tim17
    2.3e-10   38.0   1.7    4.1e-10   37.2   1.1    1.4  1  TIGR00983 3a0801s02tim23: mitochondrial import inner membrane translocase subunit


Domain annotation for each model (and alignments):
>> TIGR00980  3a0801so1tim17: mitochondrial import inner membrane translocase subunit tim17
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  224.4   0.2     7e-71   1.4e-67       5     143 ..       5     143 ..       1     180 [. 0.93

  Alignments for each domain:
  == domain 1    score: 224.4 bits;  conditional E-value: 7e-71
   TIGR00980   5 trePcPyrilddiGgafamGtiGGaifqaikGfrnspkGeklvgalaaiktrapvlGgnfavwGGlfstidcalvavrkkedPwnsivsGaltGallavrsGpkamagsailgavllalieGvGlvltrfaaaqakpva 143
                  r+PcP+rilddiGgafamG+iGG+i++++kG rnsp+Ge+l+g+++a+++rap+lGgnfavwGGlfs +dc+lv +r+kedPwnsi+sGaltG++la+r+G++a   sa++g+vlla+ieG+ + ltr++a + +p  
  MMETSP1137-20121227|9942_1   5 ERDPCPHRILDDIGGAFAMGAIGGGIWNSVKGARNSPRGERLIGSVQAVRARAPILGGNFAVWGGLFSMFDCTLVWLRRKEDPWNSITSGALTGGVLAARGGWRAASRSAAVGGVLLAMIEGLNIFLTRMMADTPPPPY 143
                 7**********************************************************************************************************************************99876543 PP

>> TIGR00983  3a0801s02tim23: mitochondrial import inner membrane translocase subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.2   1.1     2e-13   4.1e-10      38     147 ..      17     122 ..      11     124 .. 0.88

  Alignments for each domain:
  == domain 1    score: 37.2 bits;  conditional E-value: 2e-13
   TIGR00983  38 tGtayltGlaiGalvGlreGlketesisttklrlnriLnsvtrrGallgnslGilaLvYnainslieaargkedvansvaAGaltGalykstrGlraiavssalvataag 147
                 +G+a+  G+  G+++   +G ++ + +     rl   +  v  r ++lg +  + + +++ ++ +++ +r ked +ns++ GaltG +  + +G ra+++s+a+++++ +
  MMETSP1137-20121227|9942_1  17 IGGAFAMGAIGGGIWNSVKGARNSPRG----ERLIGSVQAVRARAPILGGNFAVWGGLFSMFDCTLVWLRRKEDPWNSITSGALTGGVLAARGGWRAASRSAAVGGVLLA 122
                 788888888888888777777765544....478888899999*************************************************************998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (250 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        68  (0.0165773); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.17u 0.20s 00:00:00.37 Elapsed: 00:00:00.35
# Mc/sec: 942.78
//
Query:       MMETSP1137-20121227|9943_1  [L=140]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (140 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        83  (0.020234); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.19s 00:00:00.33 Elapsed: 00:00:00.36
# Mc/sec: 513.29
//
Query:       MMETSP1137-20121227|9945_1  [L=202]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.9e-11   41.6   0.1    6.7e-07   27.1   0.0    2.3  2  TIGR02189 GlrX-like_plant: glutaredoxin-like family
    3.2e-11   41.2   0.0    8.1e-06   23.9   0.0    2.4  2  TIGR02181 GRX_bact: glutaredoxin 3
      1e-08   33.1   0.0     0.0019   16.3   0.0    2.3  2  TIGR02180 GRX_euk: glutaredoxin
      2e-06   25.7   0.0     0.0085   14.0   0.0    2.3  2  TIGR00365 TIGR00365: monothiol glutaredoxin, Grx4 family
    4.3e-06   24.4   0.2      0.014   13.2   0.0    2.4  2  TIGR02190 GlrX-dom: glutaredoxin-family domain


Domain annotation for each model (and alignments):
>> TIGR02189  GlrX-like_plant: glutaredoxin-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.6   0.0   2.7e-05     0.022       2      47 ..      77     122 ..      76     138 .. 0.85
   2 !   27.1   0.0   8.1e-10   6.7e-07      45      94 ..     147     195 ..     136     198 .. 0.80

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 2.7e-05
   TIGR02189   2 rrlvsekavvifskssCClshvvkrLllelGvnPavveldkeaeak 47 
                 +++v  ++vv+++++ C  s ++ +++ e G +  v+el+++++  
  MMETSP1137-20121227|9945_1  77 EQVVHSSPVVVLARERCPYSEIAVQIIAEAGSKYKVIELGRNESEL 122
                 688999*********************************9876544 PP

  == domain 2    score: 27.1 bits;  conditional E-value: 8.1e-10
   TIGR02189  45 eakeiekallelgskeavPvvfvGGklvGgleevmalhlsgsLvpllkka 94 
                 ea+   +al++ g ++ +P+vf+GG++vGg+ +v  l  +g+L+pl+++a
  MMETSP1137-20121227|9945_1 147 EAAADTAALAN-GRAAGLPAVFIGGRYVGGMGSVCHLDRQGKLKPLIEAA 195
                 44444445555.89999*****************999999*****99876 PP

>> TIGR02181  GRX_bact: glutaredoxin 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   4.7e-06    0.0038       1      41 [.      85     126 ..      85     137 .. 0.83
   2 !   23.9   0.0   9.8e-09   8.1e-06      30      79 ..     141     191 ..     129     192 .. 0.85

  Alignments for each domain:
  == domain 1    score: 15.3 bits;  conditional E-value: 4.7e-06
   TIGR02181   1 vviYtkksCpycsrAkalLeekgvefeeievdkdk.eareem 41 
                 vv+ +++ Cpy++ A ++++e g +++ ie+ +++ e+r+e+
  MMETSP1137-20121227|9945_1  85 VVVLARERCPYSEIAVQIIAEAGSKYKVIELGRNEsELRAEL 126
                 678899*************************99883455555 PP

  == domain 2    score: 23.9 bits;  conditional E-value: 9.8e-09
   TIGR02181  30 evdkdkeareemierskgrr.tvPQifigdvhvGGcddLlaleregkLdkL 79 
                 ++ +++ea +  ++ ++gr   +P +fig + vGG+  +++l+r+gkL++L
  MMETSP1137-20121227|9945_1 141 NIASSPEAAADTAALANGRAaGLPAVFIGGRYVGGMGSVCHLDRQGKLKPL 191
                 67788888888888898876269*************************998 PP

>> TIGR02180  GRX_euk: glutaredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0   2.3e-06    0.0019       1      47 [.      85     127 ..      85     136 .. 0.83
   2 !   14.7   0.0   7.1e-06    0.0058      54      83 ..     162     191 ..     153     192 .. 0.90

  Alignments for each domain:
  == domain 1    score: 16.3 bits;  conditional E-value: 2.3e-06
   TIGR02180   1 VvvfsKsyCpYckkakelLkklkvkkalevveldklengselqdyLk 47 
                 Vvv ++  CpY++ a +++++   k  ++v+el ++  +sel++ L 
  MMETSP1137-20121227|9945_1  85 VVVLARERCPYSEIAVQIIAEAGSK--YKVIELGRN--ESELRAELA 127
                 89******************88566..******987..566666655 PP

  == domain 2    score: 14.7 bits;  conditional E-value: 7.1e-06
   TIGR02180  54 tVPrifingkfiGGsddlkklekkgkleel 83 
                  +P +fi+g+ +GG  ++ +l+++gkl+ l
  MMETSP1137-20121227|9945_1 162 GLPAVFIGGRYVGGMGSVCHLDRQGKLKPL 191
                 58*************************875 PP

>> TIGR00365  TIGR00365: monothiol glutaredoxin, Grx4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.0     1e-05    0.0085       5      66 ..      76     133 ..      72     137 .. 0.79
   2 !    9.6   0.0   0.00024       0.2      68      98 ..     163     193 ..     141     194 .. 0.91

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 1e-05
   TIGR00365   5 ikeqvkenkvvlymkGtpelpqCGfsakavqilkalgvefatvnvle.deeireelkeysnWP 66 
                 i++ v++++vv+         +C +s+ avqi+ ++g +++ +++ + ++e+r+el +y   P
  MMETSP1137-20121227|9945_1  76 IEQVVHSSPVVVLA-----RERCPYSEIAVQIIAEAGSKYKVIELGRnESELRAELASYVRAP 133
                 55666666666553.....468**********************9761579*****9998766 PP

  == domain 2    score: 9.6 bits;  conditional E-value: 0.00024
   TIGR00365  68 iPqlyvkgelvGGcdivlelyesgelkkllk 98 
                 +P +++ g +vGG   v +l ++g+lk l++
  MMETSP1137-20121227|9945_1 163 LPAVFIGGRYVGGMGSVCHLDRQGKLKPLIE 193
                 89*************************9986 PP

>> TIGR02190  GlrX-dom: glutaredoxin-family domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   0.0   1.7e-05     0.014       8      45 ..      83     120 ..      77     153 .. 0.81
   2 !    9.1   0.1   0.00033      0.27      56      73 ..     161     178 ..     150     182 .. 0.81

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 1.7e-05
   TIGR02190   8 esvsvftkpGCPfCakakavLkekGldfeeivLgkdir 45 
                   v+v+++  CP+   a + ++e G +++ i Lg++ +
  MMETSP1137-20121227|9945_1  83 SPVVVLARERCPYSEIAVQIIAEAGSKYKVIELGRNES 120
                 569*******************************9754 PP

  == domain 2    score: 9.1 bits;  conditional E-value: 0.00033
   TIGR02190  56 ttvPqvfinGkliGgsde 73 
                    P vfi+G+++Gg+  
  MMETSP1137-20121227|9945_1 161 AGLPAVFIGGRYVGGMGS 178
                 457***********9865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (202 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        90  (0.0219405); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.23u 0.16s 00:00:00.39 Elapsed: 00:00:00.47
# Mc/sec: 567.27
//
Query:       MMETSP1137-20121227|9946_1  [L=65]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (65 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        35  (0.00853242); expected 82.0 (0.02)
Passed bias filter:                       35  (0.00853242); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.31
# Mc/sec: 276.75
//
Query:       MMETSP1137-20121227|9947_1  [L=444]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.5e-15   52.7   0.0    4.8e-15   52.3   0.0    1.1  1  TIGR03903 TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
    2.5e-06   24.9   0.0      4e-06   24.3   0.0    1.2  1  TIGR03724 arch_bud32: Kae1-associated kinase Bud32
  ------ inclusion threshold ------
       0.14    9.8   3.5      0.054   11.2   0.1    1.8  2  TIGR02541 flagell_FlgJ: flagellar rod assembly protein/muramidase FlgJ


Domain annotation for each model (and alignments):
>> TIGR03903  TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.3   0.0   3.5e-18   4.8e-15      23     186 ..     115     272 ..      96     284 .. 0.82

  Alignments for each domain:
  == domain 1    score: 52.3 bits;  conditional E-value: 3.5e-18
   TIGR03903  23 aRFrReialCarLshPnivaLlDsGeaedgllFavFeyveGrtl..revLaadGaLpaaetgrLmlq...vLDalaaahdaGvvhRDLkPqnimvsaadveshakvLDFGigaLlpgvedadeatltrttevlGsPaYaaPeqLRgepvtaksDlYaWGLivleCLtGk 186
                   F+ e+++  +L hP  v+ l     + +++     + eG  l  r+  a +   p+  t++L+ q   + +++   h++ ++hRDLk qni++ a   +++ k+ DFG++   p  ++    +lt++t   Gs  + aPe LR e      D+Y++ ++  e Lt +
  MMETSP1137-20121227|9947_1 115 MLFKMEVKIWSELDHPACVKFLGVCLDPKEYIL-LCALCEGGSLshRHFYARQARKPPLSTAALVHQattIAEGMEYLHERNIMHRDLKSQNILIGA---DNELKISDFGLAXFAPTEKA----ELTAET---GSYRWMAPEVLRHERYDKSCDVYSYAIVCWEMLTYQ 272
                 5699******************66665555443.445667766533667788888888888888877444789*********************976...45689*******99997665....888886...9********************************977 PP

>> TIGR03724  arch_bud32: Kae1-associated kinase Bud32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.3   0.0     3e-09     4e-06      94     139 ..     179     225 ..     160     235 .. 0.83

  Alignments for each domain:
  == domain 1    score: 24.3 bits;  conditional E-value: 3e-09
   TIGR03724  94 ellkevGelvgklHkagivhgDlttsNiiv.kddklyliDfGLgkks 139
                 + +++++e +  lH+ +i+h Dl  +Ni++  d++l + DfGL+ + 
  MMETSP1137-20121227|9947_1 179 HQATTIAEGMEYLHERNIMHRDLKSQNILIgADNELKISDFGLAXFA 225
                 55678999999*******************558888999*****984 PP

>> TIGR02541  flagell_FlgJ: flagellar rod assembly protein/muramidase FlgJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.1     4e-05     0.054     120     173 ..      14      68 ..       2      73 .. 0.71
   2 ?   -1.5   0.3      0.28   3.8e+02     115     144 ..     356     385 ..     321     421 .. 0.48

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 4e-05
   TIGR02541 120 rrevkallevv.eksrardraaaesvaasskeFvasllsaArkaaqqlGvpeell 173
                 ++e+k+ ++ + ++ +a+++++ +s + + ++     + +Arkaa +lGv++ l+
  MMETSP1137-20121227|9947_1  14 KSEKKSDSSRSrSEEHAGKSTSXKSWPHHRRDHSGATSAQARKAAEELGVEKWLV 68 
                 233333333330344455556999**************************99876 PP

  == domain 2    score: -1.5 bits;  conditional E-value: 0.28
   TIGR02541 115 ldakkrrevkallevveksrardraaaesv 144
                  +a++  ++ +   +v+ + +++++   s+
  MMETSP1137-20121227|9947_1 356 AAATVAAANASTAAAVSAAASSGSSFGTSM 385
                 111112222222222222333333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (444 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       118  (0.0287665); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.37u 0.15s 00:00:00.52 Elapsed: 00:00:00.45
# Mc/sec: 1302.29
//
Query:       MMETSP1137-20121227|9948_1  [L=540]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (540 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       120  (0.029254); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.17s 00:00:00.51 Elapsed: 00:00:00.56
# Mc/sec: 1272.75
//
Query:       MMETSP1137-20121227|9949_1  [L=241]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (241 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        51  (0.012433); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.11s 00:00:00.31 Elapsed: 00:00:00.33
# Mc/sec: 963.92
//
Query:       MMETSP1137-20121227|9950_1  [L=518]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (518 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       235  (0.0572891); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.13s 00:00:00.50 Elapsed: 00:00:00.82
# Mc/sec: 833.78
//
Query:       MMETSP1137-20121227|9951_1  [L=319]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (319 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        71  (0.0173086); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.12s 00:00:00.37 Elapsed: 00:00:00.47
# Mc/sec: 895.84
//
Query:       MMETSP1137-20121227|9952_1  [L=343]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.2e-07   26.7   0.1      0.096    9.4   0.0    3.1  3  TIGR03466 HpnA: hopanoid-associated sugar epimerase
     0.0012   15.9   0.0      0.002   15.3   0.0    1.3  1  TIGR00745 apbA_panE: 2-dehydropantoate 2-reductase
  ------ inclusion threshold ------
      0.011   12.6   0.1      0.016   12.1   0.1    1.2  1  TIGR03364 HpnW_proposed: FAD dependent oxidoreductase TIGR03364


Domain annotation for each model (and alignments):
>> TIGR03466  HpnA: hopanoid-associated sugar epimerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.4   0.0     7e-05     0.096       6      38 ..      75     106 ..      70     111 .. 0.86
   2 !    4.9   0.0    0.0016       2.2      91     134 ..     154     197 ..     142     210 .. 0.84
   3 !    8.8   0.0    0.0001      0.14     201     247 ..     250     299 ..     236     333 .. 0.80

  Alignments for each domain:
  == domain 1    score: 9.4 bits;  conditional E-value: 7e-05
   TIGR03466   6 tGatGFvGsavvrllleeGeevrvlvrktsdrr 38 
                  G +G+vGs ++  l ++Ge vrv  r++ d+r
  MMETSP1137-20121227|9952_1  75 VG-AGWVGSRLATHLHDRGELVRVTNRPGIDQR 106
                 44.59**********************998876 PP

  == domain 2    score: 4.9 bits;  conditional E-value: 0.0016
   TIGR03466  91 egtravleaAleagvervvytssvatlgvkedgkeadettpskl 134
                  gt +++ +   + v rvv  ss a+ +v   g+++de+tp++ 
  MMETSP1137-20121227|9952_1 154 TGTCELFWEQYLQYVPRVVCYSSTAVYQVGVPGQHVDEHTPLRD 197
                 5677777777778899************************9864 PP

  == domain 3    score: 8.8 bits;  conditional E-value: 0.0001
   TIGR03466 201 Lnlvdvddv..aegHllAler.GriGerYiLGgenltlkqlleklaeitg 247
                 +n+v+vdd+  a++ +lAl    + G r  +Gg++++l++l+++  +++ 
  MMETSP1137-20121227|9952_1 250 VNMVHVDDIiaATAAVLALPAdAERGVRMNIGGHDFKLRELMAHCRHVAT 299
                 6*******94345567787543899****************998776654 PP

>> TIGR00745  apbA_panE: 2-dehydropantoate 2-reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   1.4e-06     0.002       2      93 ..      72     169 ..      71     173 .. 0.78

  Alignments for each domain:
  == domain 1    score: 15.3 bits;  conditional E-value: 1.4e-06
   TIGR00745   2 iailGaGAvGsllgakLaragadVtllars....kqlealnqeGLsisklege..eekkvpveaaedpetls.kaDlllvtvKayqteealakllpyig 93 
                 i+i+GaG vGs l+++L++ g+ V +  r     ++ e +  e + + ++  +  ++  +p++  + p+ +  +a ++ +++K++  e  ++++l+y+ 
  MMETSP1137-20121227|9952_1  72 IMIVGAGWVGSRLATHLHDRGELVRVTNRPgidqRHKEPYF-EPVPLADDVPRheFDITDPTTWDSLPAPETlQAAVVTFATKTGTCELFWEQYLQYVP 169
                 89*************************99988855555444.556666555443477777788777777777788888899999998888888888875 PP

>> TIGR03364  HpnW_proposed: FAD dependent oxidoreductase TIGR03364
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.1   1.2e-05     0.016       2      31 ..      71     100 ..      70     105 .. 0.94

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 1.2e-05
   TIGR03364   2 dvvvvGaGivGlahAlaaarrGlkVtvier 31 
                 ++++vGaG vG   A + + rG  V+v +r
  MMETSP1137-20121227|9952_1  71 EIMIVGAGWVGSRLATHLHDRGELVRVTNR 100
                 689***********************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (343 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       123  (0.0299854); expected 82.0 (0.02)
Passed bias filter:                      115  (0.0280351); expected 82.0 (0.02)
Passed Vit filter:                        30  (0.00731351); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.31u 0.19s 00:00:00.50 Elapsed: 00:00:00.67
# Mc/sec: 675.71
//
Query:       MMETSP1137-20121227|9953_1  [L=401]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (401 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        88  (0.0214529); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.12s 00:00:00.43 Elapsed: 00:00:00.66
# Mc/sec: 801.93
//
Query:       MMETSP1137-20121227|9954_1  [L=502]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0033   14.7   1.9      0.046   10.9   0.2    2.2  2  TIGR03413 GSH_gloB: hydroxyacylglutathione hydrolase
  ------ inclusion threshold ------
       0.43    7.4   6.2       0.36    7.6   2.4    2.0  2  TIGR02651 RNase_Z: ribonuclease Z


Domain annotation for each model (and alignments):
>> TIGR03413  GSH_gloB: hydroxyacylglutathione hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.9   0.2   2.2e-05     0.046      31      65 ..     171     205 ..     162     229 .. 0.79
   2 !    2.9   0.0    0.0061        13      39     111 ..     420     498 ..     390     499 .. 0.60

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 2.2e-05
   TIGR03413  31 epvlealeekglkleaillTHhHaDHvggvaelle 65 
                 +p  +a +++ l+++ +++TH HaDHvg  ++  +
  MMETSP1137-20121227|9954_1 171 QPKRKAHQHQLLHIDYLIITHFHADHVGEPEARSK 205
                 5666777788899999***********97666555 PP

  == domain 2    score: 2.9 bits;  conditional E-value: 0.0061
   TIGR03413  39 ekglkleaillTHhHaDHvggv...aellekfp....vkvvgpaeeripgltkev..kegdevellelevevlevpGHtlgH 111
                 +++ ++++i+ TH H+         a+l +++     v+v+ p +   +  + +v  ++  ev +l+++ +v+e  + t+ H
  MMETSP1137-20121227|9954_1 420 TSEQQPRDIFATHIHEKRLRELgqlANLFTSTAghvvVRVYPPGS---QPSDPKVtaTQPYEVFVLDANRKVVESRAYTATH 498
                 3456899********987655500044544444322233443333...3333333003444555677778888887777777 PP

>> TIGR02651  RNase_Z: ribonuclease Z
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   2.4   0.00018      0.36      46      65 ..     178     197 ..     170     198 .. 0.84
   2 ?   -0.3   0.0     0.045        93      40      62 ..     413     435 ..     410     449 .. 0.89

  Alignments for each domain:
  == domain 1    score: 7.6 bits;  conditional E-value: 0.00018
   TIGR02651  46 kisfkkidkIfitHlHgDHi 65 
                 + ++ +id ++itH+H+DH+
  MMETSP1137-20121227|9954_1 178 QHQLLHIDYLIITHFHADHV 197
                 5567789************7 PP

  == domain 2    score: -0.3 bits;  conditional E-value: 0.045
   TIGR02651  40 rqllkskisfkkidkIfitHlHg 62 
                 +q++ +++s ++ + If tH+H+
  MMETSP1137-20121227|9954_1 413 MQVIAETTSEQQPRDIFATHIHE 435
                 67888889999999********6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (502 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        79  (0.0192589); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.34u 0.16s 00:00:00.50 Elapsed: 00:00:00.56
# Mc/sec: 1162.43
//
Query:       MMETSP1137-20121227|9955_1  [L=348]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (348 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       198  (0.0482691); expected 82.0 (0.02)
Passed bias filter:                      120  (0.029254); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.15s 00:00:00.46 Elapsed: 00:00:00.55
# Mc/sec: 835.13
//
Query:       MMETSP1137-20121227|9956_1  [L=369]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (369 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        65  (0.0158459); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.16s 00:00:00.44 Elapsed: 00:00:00.41
# Mc/sec: 1187.90
//
Query:       MMETSP1137-20121227|9957_1  [L=290]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.45    8.5   5.5       0.18    9.7   0.1    2.9  4  TIGR01403 fliQ_rel_III: type III secretion protein, HrpO family


Domain annotation for each model (and alignments):
>> TIGR01403  fliQ_rel_III: type III secretion protein, HrpO family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.1   4.4e-05      0.18      12      44 ..      87     119 ..      83     145 .. 0.78
   2 ?   -0.2   0.0     0.055   2.3e+02      19      42 ..     149     172 ..     133     215 .. 0.78
   3 ?   -2.4   0.0      0.27   1.1e+03       7      25 ..     215     232 ..     207     235 .. 0.62
   4 ?   -1.6   0.2      0.16   6.4e+02       5      38 ..     251     286 ..     247     288 .. 0.67

  Alignments for each domain:
  == domain 1    score: 9.7 bits;  conditional E-value: 4.4e-05
   TIGR01403  12 lvlllSlppvlvaaivGvlvsllqavtqlqdqt 44 
                 l+l   +p+v+++a   + +s +qav+q+ d+ 
  MMETSP1137-20121227|9957_1  87 LILTKIAPSVGAVAANCMFLSCFQAVMQVRDKG 119
                 7888889**********************9985 PP

  == domain 2    score: -0.2 bits;  conditional E-value: 0.055
   TIGR01403  19 ppvlvaaivGvlvsllqavtqlqd 42 
                 p v +a   G+l++ll + t +++
  MMETSP1137-20121227|9957_1 149 PFVFAANFPGLLLGLLYSSTAIKN 172
                 778888888999999988887765 PP

  == domain 3    score: -2.4 bits;  conditional E-value: 0.27
   TIGR01403   7 kqalllvlllSlppvlvaa 25 
                  +al lv+  S+p   +  
  MMETSP1137-20121227|9957_1 215 ANAL-LVVYYSAPLSTIGQ 232
                 4454.56677887665555 PP

  == domain 4    score: -1.6 bits;  conditional E-value: 0.16
   TIGR01403   5 lvkqalllv..lllSlppvlvaaivGvlvsllqavt 38 
                  v+  ++ +  l +S p v      G ++s++q + 
  MMETSP1137-20121227|9957_1 251 TVNGLMWTIygLATSDPFVWSINGLGAVLSVMQLLL 286
                 566667776445667777777777888899998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (290 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       110  (0.0268162); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.24u 0.12s 00:00:00.36 Elapsed: 00:00:00.63
# Mc/sec: 607.57
//
Query:       MMETSP1137-20121227|9958_1  [L=135]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (135 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        58  (0.0141394); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.16s 00:00:00.33 Elapsed: 00:00:00.47
# Mc/sec: 379.12
//
Query:       MMETSP1137-20121227|9959_1  [L=806]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (806 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       495  (0.120673); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.60u 0.15s 00:00:00.75 Elapsed: 00:00:00.92
# Mc/sec: 1156.34
//
Query:       MMETSP1137-20121227|9960_1  [L=476]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (476 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       136  (0.0331546); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.15s 00:00:00.47 Elapsed: 00:00:00.44
# Mc/sec: 1427.88
//
Query:       MMETSP1137-20121227|9961_1  [L=178]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (178 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       280  (0.0682594); expected 82.0 (0.02)
Passed bias filter:                      117  (0.0285227); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.15s 00:00:00.35 Elapsed: 00:00:00.62
# Mc/sec: 378.94
//
Query:       MMETSP1137-20121227|9962_1  [L=360]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.5e-23   78.9   0.0    1.2e-22   78.1   0.0    1.4  1  TIGR03162 ribazole_cobC: alpha-ribazole phosphatase
    8.6e-16   55.8   0.1    1.3e-15   55.2   0.0    1.3  1  TIGR03848 MSMEG_4193: probable phosphomutase, MSMEG_4193 family
    3.7e-12   44.0   0.0    6.3e-12   43.2   0.0    1.3  1  TIGR01258 pgm_1: phosphoglycerate mutase 1 family
  ------ inclusion threshold ------
       0.02   12.6   0.0      0.041   11.6   0.0    1.5  1  TIGR00249 sixA: phosphohistidine phosphatase SixA


Domain annotation for each model (and alignments):
>> TIGR03162  ribazole_cobC: alpha-ribazole phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.1   0.0   1.1e-25   1.2e-22       1     159 [.      67     238 ..      67     258 .. 0.83

  Alignments for each domain:
  == domain 1    score: 78.1 bits;  conditional E-value: 1.1e-25
   TIGR03162   1 lyLiRHgevevnkgkcY.GqtDvpLaekgeeqaaalrekledvkfdavvsSplsRcrelAellaeklklpi.ekddrLrEmdfGdwEgksydeisekyp.eldawakdlaharvp..gGEsvadfsqRveefleel.......ake.ekenvlivtHgGvirallahllglp 159
                 lyL+RHg++e+n++ +  G++D+ L+++g +qa  l+++l+d +   v sS+l+R++ +A+++++++++    ++ ++ E  fGd Eg + +++ e+    ++aw     ++ +p  gGE++++ ++R  + l +l       a++ + ++v++v+Hg    +l++ l   +
  MMETSP1137-20121227|9962_1  67 LYLVRHGQTEWNNEGRVqGRSDIDLNDRGLQQAVFLADALADLPXGLVASSNLKRAAVTADTVHQRHSVAPrARSGDFAEXCFGDLEGAKVANVREDMRaIYRAWSMGDGDVPFPgiGGETYNQAVARGRAGLRKLgvlpsesAAArSPRHVAVVAHGRFNLVLMSALCADE 238
                 79******************************************************************9998999**********************9999*******9999999445**********998877653322222233577899*****987777666554443 PP

>> TIGR03848  MSMEG_4193: probable phosphomutase, MSMEG_4193 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.2   0.0   1.3e-18   1.3e-15       3     134 ..      68     203 ..      66     236 .. 0.85

  Alignments for each domain:
  == domain 1    score: 55.2 bits;  conditional E-value: 1.3e-18
   TIGR03848   3 llvrhgrstantaktLaGrtpGveLderGreqaaalaerladlpiaaivssPlercretveaiaeargleva.vderltevdYGdWtGrelkeLake..eLwkvvqahpsaavfPg..Gealaevqaravaavreld 134
                  lvrhg++  n ++++ Gr++ ++L++rG +qa  la+ ladlp   + ss l+r+  t++++ +++++ ++    +++e  +Gd +G++++++ ++   +++        + fPg  Ge+ +++ ar  a +r+l 
  MMETSP1137-20121227|9962_1  68 YLVRHGQTEWNNEGRVQGRSD-IDLNDRGLQQAVFLADALADLPXGLVASSNLKRAAVTADTVHQRHSVAPRaRSGDFAEXCFGDLEGAKVANVREDmrAIYRAWSMGDGDVPFPGigGETYNQAVARGRAGLRKLG 203
                 69****9999*********97.*********************************************8888747789***************987652235666666677899**888*********9999888764 PP

>> TIGR01258  pgm_1: phosphoglycerate mutase 1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.2   0.0   6.1e-15   6.3e-12       2     101 ..      66     161 ..      65     171 .. 0.91

  Alignments for each domain:
  == domain 1    score: 43.2 bits;  conditional E-value: 6.1e-15
   TIGR01258   2 klvlvrhGeseWnkenlftGWvdvelsekGkeeakeagkllkeeklefdvaytsllkraiktlnivldeldqlwlpvkksWrlnerhyGalqGldkaeta 101
                 +l lvrhG++eWn+e +  G  d++l+++G ++a+  + +l++  l   ++ +s lkra  t+ +v ++  ++  p  +s  + e  +G+l+G + a++ 
  MMETSP1137-20121227|9962_1  66 RLYLVRHGQTEWNNEGRVQGRSDIDLNDRGLQQAVFLADALAD--LPXGLVASSNLKRAAVTADTVHQR--HSVAPRARSGDFAEXCFGDLEGAKVANVR 161
                 689*************************************975..78899***************9775..5678******************9877665 PP

>> TIGR00249  sixA: phosphohistidine phosphatase SixA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0     4e-05     0.041       2      68 ..      66     134 ..      65     143 .. 0.80

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 4e-05
   TIGR00249   2 elylmrHGeAkekaa....sDkeRqLtkkGkdeaervaqwLkkagveldrilvSplvRAeqtaeivadald 68 
                 +lyl+rHG+ + +++      ++ +L  +G ++a  +a+ L +      ++  S l RA  ta+ v +   
  MMETSP1137-20121227|9962_1  66 RLYLVRHGQTEWNNEgrvqGRSDIDLNDRGLQQAVFLADALADL--PXGLVASSNLKRAAVTADTVHQRHS 134
                 79********9988766444556678999999988888888664..557899**************99765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (360 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        86  (0.0209654); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.26u 0.16s 00:00:00.42 Elapsed: 00:00:00.38
# Mc/sec: 1250.42
//
Query:       MMETSP1137-20121227|9963_1  [L=395]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (395 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        37  (0.00901999); expected 82.0 (0.02)
Passed bias filter:                       30  (0.00731351); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.15s 00:00:00.43 Elapsed: 00:00:00.37
# Mc/sec: 1409.07
//
Query:       MMETSP1137-20121227|9964_1  [L=629]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (629 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       271  (0.0660653); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.17s 00:00:00.63 Elapsed: 00:00:00.40
# Mc/sec: 2075.53
//
Query:       MMETSP1137-20121227|9965_1  [L=151]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (151 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        89  (0.0216967); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.14s 00:00:00.32 Elapsed: 00:00:00.31
# Mc/sec: 642.91
//
Query:       MMETSP1137-20121227|9966_1  [L=443]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (443 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        65  (0.0158459); expected 82.0 (0.02)
Passed bias filter:                       34  (0.00828864); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.10s 00:00:00.39 Elapsed: 00:00:00.39
# Mc/sec: 1499.26
//
Query:       MMETSP1137-20121227|9967_1  [L=247]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (247 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       109  (0.0265724); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.12s 00:00:00.34 Elapsed: 00:00:00.34
# Mc/sec: 958.86
//
Query:       MMETSP1137-20121227|9968_1  [L=118]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (118 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       185  (0.0451); expected 82.0 (0.02)
Passed bias filter:                      124  (0.0302292); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.13s 00:00:00.29 Elapsed: 00:00:00.30
# Mc/sec: 519.16
//
Query:       MMETSP1137-20121227|9969_1  [L=704]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (704 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        63  (0.0153584); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.15s 00:00:00.55 Elapsed: 00:00:00.62
# Mc/sec: 1498.71
//
Query:       MMETSP1137-20121227|9970_1  [L=262]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.8e-56  189.3   6.8    3.5e-36  122.7   1.8    2.0  2  TIGR00116 tsf: translation elongation factor Ts


Domain annotation for each model (and alignments):
>> TIGR00116  tsf: translation elongation factor Ts
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  122.7   1.8   8.5e-40   3.5e-36       3      95 ..      59     153 ..      56     154 .. 0.94
   2 !   74.0   0.2   5.8e-25   2.4e-21     175     274 ..     149     255 ..     148     262 .] 0.94

  Alignments for each domain:
  == domain 1    score: 122.7 bits;  conditional E-value: 8.5e-40
   TIGR00116   3 aisaqlvkeLRektdAgmmdCkkALveangDlekAidllRekGiakaakkadrvAaeGvvllkvdnd..kavlveinsetDFvAknegfkelank 95 
                 +i a+ vk LR+ t+AgmmdCkkAL +++gDle A ++lR+kG+a+aakkadr A+eG++ +++++    +++ve+n+etDFvAk  +f+ela+ 
  MMETSP1137-20121227|9970_1  59 TIDAKTVKSLRDATGAGMMDCKKALIDSDGDLEAATEFLRKKGLASAAKKADRAAKEGIIETYIHTGakLGIMVELNCETDFVAKRPEFQELAKA 153
                 6999********************************************************9887765449**********************986 PP

  == domain 2    score: 74.0 bits;  conditional E-value: 5.8e-25
   TIGR00116 175 elakdlAmHvAAv.kPqfldqddvsaevvkkereiekdqaelegkPekilekiveGrlkkflaeisLleqkfvmddkktvkqllke......knakvtefvrfevGe 274
                 elak +Am vAA    + + +dd+  ++v+ke+ ie   + l+gkPe+i+ekiv+Gr +k ++   L+ q ++ d++ tv +l+k+      +n+kv +f rf vG 
  MMETSP1137-20121227|9970_1 149 ELAKAIAMQVAACpTVEAVTPDDIPVDWVEKEKRIEAASEDLQGKPEQIVEKIVAGRXEKAMKAKLLMPQPYIRDPNMTVDELVKSyvaklgENIKVARFARFTVGG 255
                 89*********9824578****************************************************************************************4 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (262 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       168  (0.0409556); expected 82.0 (0.02)
Passed bias filter:                      104  (0.0253535); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.24u 0.15s 00:00:00.39 Elapsed: 00:00:00.45
# Mc/sec: 768.47
//
Query:       MMETSP1137-20121227|9971_1  [L=298]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (298 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        75  (0.0182838); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.17s 00:00:00.40 Elapsed: 00:00:00.35
# Mc/sec: 1123.79
//
Query:       MMETSP1137-20121227|9972_1  [L=110]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (110 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       120  (0.029254); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.11s 00:00:00.26 Elapsed: 00:00:00.51
# Mc/sec: 284.68
//
Query:       MMETSP1137-20121227|9973_1  [L=171]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.63    7.0   4.3       0.79    6.7   3.0    1.1  1  TIGR03752 conj_TIGR03752: integrating conjugative element protein, PFL_4705 family


Domain annotation for each model (and alignments):
>> TIGR03752  conj_TIGR03752: integrating conjugative element protein, PFL_4705 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   3.0   0.00019      0.79      85     144 ..      82     140 ..      68     150 .. 0.79

  Alignments for each domain:
  == domain 1    score: 6.7 bits;  conditional E-value: 0.00019
   TIGR03752  85 lkkenerlkkreesvderiqqaleaekkelkkekeqlkeeqakleelldelqkkledvaa 144
                 l+  +++l+++ ++   r+++al++ +++ ++++  l++ +++ ++++++l+++l++  +
  MMETSP1137-20121227|9973_1  82 LQ-AERHLRREAQQEVMRMRSALDSLQQKHRADQAYLNDMIQRQRQSIEQLTRQLQKDEE 140
                 44.34566666677778999*******************************999985433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (171 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       364  (0.0887372); expected 82.0 (0.02)
Passed bias filter:                      226  (0.0550951); expected 82.0 (0.02)
Passed Vit filter:                        37  (0.00901999); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.22u 0.17s 00:00:00.39 Elapsed: 00:00:00.47
# Mc/sec: 480.22
//
Query:       MMETSP1137-20121227|9975_1  [L=77]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0006   17.2   2.0    0.00081   16.8   1.4    1.3  1  TIGR01944 rnfB: electron transport complex, RnfABCDGE type, B subunit
     0.0041   15.0   0.1       0.17    9.8   0.0    1.8  2  TIGR01259 comE: comEA protein
  ------ inclusion threshold ------
      0.052   11.2   8.6       0.71    7.6   0.0    3.9  5  TIGR02167 Liste_lipo_26: bacterial surface protein 26-residue repeat


Domain annotation for each model (and alignments):
>> TIGR01944  rnfB: electron transport complex, RnfABCDGE type, B subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   1.4     6e-07   0.00081      47      93 ..      12      63 ..       2      73 .. 0.79

  Alignments for each domain:
  == domain 1    score: 16.8 bits;  conditional E-value: 6e-07
   TIGR01944 47 tqCgqCGypGCrpyaeaiaegea...in..kCpPGGeavieklaellgveke 93
                ++C   Gy+GC+ +ae +  ++    in   C   G+++ ++lae l+++k+
  MMETSP1137-20121227|9975_1 12 SDCXGIGYKGCKALAECLKFNQTltnINlsDCRGIGDKGCKALAEGLKINKA 63
                7899*************98766432233337***************999854 PP

>> TIGR01259  comE: comEA protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.8   0.0   0.00012      0.17      62     118 ..       2      58 ..       1      60 [. 0.87
   2 !    8.7   0.0   0.00026      0.36      66     108 ..      36      77 .]      28      77 .] 0.89

  Alignments for each domain:
  == domain 1    score: 9.8 bits;  conditional E-value: 0.00012
   TIGR01259  62 lnkA.sleeLqalkGiGpakAkaiieyReenGaFksvddltkvsGiGeksleklkdyv 118
                 +n+A +  +L    GiG +  ka++e  + n     + +l   +GiG+k  + l++ +
  MMETSP1137-20121227|9975_1   2 INQAlTSINLSDCXGIGYKGCKALAECLKFNQTLTNI-NLSDCRGIGDKGCKALAEGL 58 
                 6777567899*********************999999.59*********999888765 PP

  == domain 2    score: 8.7 bits;  conditional E-value: 0.00026
   TIGR01259  66 sleeLqalkGiGpakAkaiieyReenGaFksvddltkvsGiGe 108
                 ++ +L   +GiG +  ka++e  + n a  s+d l +  GiG+
  MMETSP1137-20121227|9975_1  36 TNINLSDCRGIGDKGCKALAEGLKINKALTSID-LSRCDGIGD 77 
                 66789999***********************95.99*****95 PP

>> TIGR02167  Liste_lipo_26: bacterial surface protein 26-residue repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   0.1    0.0024       3.3       5      14 ..       3      12 ..       3      13 .. 0.87
   2 ?   -2.1   0.0      0.53   7.3e+02       4       8 ..      21      25 ..      20      26 .. 0.87
   3 ?    1.5   0.1     0.042        58       7      14 ..      34      41 ..      30      42 .. 0.81
   4 ?   -2.1   0.0      0.53   7.3e+02       4       8 ..      50      54 ..      49      55 .. 0.87
   5 ?    7.6   0.0   0.00052      0.71       5      14 ..      61      70 ..      61      71 .. 0.91

  Alignments for each domain:
  == domain 1    score: 5.4 bits;  conditional E-value: 0.0024
   TIGR02167  5 CssLtsLDlS 14
                + +Lts++lS
  MMETSP1137-20121227|9975_1  3 NQALTSINLS 12
                579******9 PP

  == domain 2    score: -2.1 bits;  conditional E-value: 0.53
   TIGR02167  4 gCssL 8 
                gC++L
  MMETSP1137-20121227|9975_1 21 GCKAL 25
                8**98 PP

  == domain 3    score: 1.5 bits;  conditional E-value: 0.042
   TIGR02167  7 sLtsLDlS 14
                 Lt+++lS
  MMETSP1137-20121227|9975_1 34 TLTNINLS 41
                59*****9 PP

  == domain 4    score: -2.1 bits;  conditional E-value: 0.53
   TIGR02167  4 gCssL 8 
                gC++L
  MMETSP1137-20121227|9975_1 50 GCKAL 54
                8**98 PP

  == domain 5    score: 7.6 bits;  conditional E-value: 0.00052
   TIGR02167  5 CssLtsLDlS 14
                +++Lts+DlS
  MMETSP1137-20121227|9975_1 61 NKALTSIDLS 70
                689******9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (77 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        63  (0.0153584); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.16u 0.16s 00:00:00.32 Elapsed: 00:00:00.37
# Mc/sec: 274.68
//
Query:       MMETSP1137-20121227|9976_1  [L=115]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (115 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        86  (0.0209654); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.10s 00:00:00.26 Elapsed: 00:00:00.37
# Mc/sec: 410.24
//
Query:       MMETSP1137-20121227|9977_1  [L=529]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00014   20.0   0.0       0.33    9.2   0.0    2.6  2  TIGR01557 myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class


Domain annotation for each model (and alignments):
>> TIGR01557  myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.2   0.0     8e-05      0.33       3      26 ..      83     106 ..      82     114 .. 0.88
   2 !    8.0   0.0   0.00019      0.78       3      26 ..     136     158 ..     134     174 .. 0.87

  Alignments for each domain:
  == domain 1    score: 9.2 bits;  conditional E-value: 8e-05
   TIGR01557   3 rvvWteelhrrFlqAvqklGgedk 26 
                 + +W+++++   l Av+k+G   +
  MMETSP1137-20121227|9977_1  83 KRPWSSDEDAALLAAVEKYGACRW 106
                 578*****************9877 PP

  == domain 2    score: 8.0 bits;  conditional E-value: 0.00019
   TIGR01557   3 rvvWteelhrrFlqAvqklGgedk 26 
                 +  Wt+ +++  lq+v k+G   +
  MMETSP1137-20121227|9977_1 136 KAEWTSAEDEAILQGVAKIGT-RW 158
                 679*****************9.77 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (529 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       107  (0.0260848); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.16s 00:00:00.50 Elapsed: 00:00:00.76
# Mc/sec: 918.71
//
Query:       MMETSP1137-20121227|9978_1  [L=60]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        20  (0.00487567); expected 82.0 (0.02)
Passed bias filter:                       16  (0.00390054); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:00.45
# Mc/sec: 175.99
//
Query:       MMETSP1137-20121227|9979_1  [L=260]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.026   10.0  37.5      0.033    9.6  26.0    1.0  1  TIGR02169 SMC_prok_A: chromosome segregation protein SMC
      0.027   11.9   2.4      0.049   11.0   1.7    1.4  1  TIGR01527 arch_NMN_Atrans: nicotinamide-nucleotide adenylyltransferase
       0.11    8.0  39.8       0.13    7.7  27.6    1.0  1  TIGR02168 SMC_prok_B: chromosome segregation protein SMC


Domain annotation for each model (and alignments):
>> TIGR02169  SMC_prok_A: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6  26.0   2.4e-05     0.033     655     914 ..      17     231 ..       3     245 .. 0.46

  Alignments for each domain:
  == domain 1    score: 9.6 bits;  conditional E-value: 2.4e-05
   TIGR02169 655 aitGGsraersgelvsasekeklerlrerleeLereleslqselrriekrldelssklsdaekkieeiekeleqleeeeeklkerleeleeklseleeeleekkeelkeleaeieeleeklaklkealedleaelseekieeieeelekleeevsriearleeieaelnklelekelleeeiqelqeeieeleeqkkeiekeieelkakleeleeeleeleaavreLeeelkdLkkereeleaelrelekkkeeleaeie 914
                 + tG +   +  ++  ++ ++ ++ l++rle L  e+ ++ +++++ ++r+d+  +  s+ +    +++ ++e +e+++e+++erl + + + +   +  +e+ + +k+ ea i + ++ l +                                           +l +++ + +++++++ ++  + +++e q++++++++e+ ++  +++e ++ e ea+ +  e+  +dL++e e + + lr+ +++++ + +e+e
  MMETSP1137-20121227|9979_1  17 SCTGSHM-LN-IKSARQRSENDVKLLNNRLERLRMEERKALKKIEETRRRADQIIQLKSRNQDVQLRKQLDAEYAERQRERARERLLQAKMETDTAIRRNTEAIAAQKKQEAAILREQRVLIEE------------------------------------------HLRQQQ-QMHIERNKRVNEMIKERAAEVQREKMKQRMEHEEILQANMEMRMLEEEAKRNMAEDVVADLEEEEEIAIERLRATQEAQKAAYEELE 231
                 5555553.22.23333334444555666666666666666666666666666666666666666666666666666666666666655555555555555555555544444444444443333..........................................222222.223333333333333333333333333333333333333333333333333333333333333333333333333333333333322 PP

>> TIGR01527  arch_NMN_Atrans: nicotinamide-nucleotide adenylyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   1.7   3.6e-05     0.049      98     164 ..     148     218 ..     134     221 .. 0.82

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 3.6e-05
   TIGR01527  98 ysnnplvvrlfkeagykvkkpkmynreeye...gteirrrllegedweklvpkavadvikeid.Gverlre 164
                   +n  v  + ke++ +v++ km +r e+e    +++  r+le+e   ++  + vad+ +e +  +erlr 
  MMETSP1137-20121227|9979_1 148 IERNKRVNEMIKERAAEVQREKMKQRMEHEeilQANMEMRMLEEEAKRNMAEDVVADLEEEEEiAIERLRA 218
                 5689999****************999766522268999*******99999999999997765436888885 PP

>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7  27.6   9.8e-05      0.13     671     878 ..      27     231 ..       8     248 .. 0.26

  Alignments for each domain:
  == domain 1    score: 7.7 bits;  conditional E-value: 9.8e-05
   TIGR02168 671 essilerkkeieeleeeieeleekiaelekelkelekeleeleeeleklrkeleelerklselkkelerlekeveqleerlaqlekeleeleeereeleeeleeaeeelkeaeeeieeleaeieqlkeelkalrealseleaeltelkeeaaekeerleslekeiaal..ekeleeleeqieeleeeiesleaeieeleeeleeleeele 878
                 +s ++  ++ ++ l++++e+l  + +++ k+++e++++ +++  +l+  r++  +l+++l+++++e +r++++++ l+++++   + + + e+  +++++e + ++e+    ee++ +++   + + e+ k  +e+++e  ae++++k + + ++e++ + + e+++l  e + +++e+  ++leee e + ++++ ++e+++++ eele
  MMETSP1137-20121227|9979_1  27 KSARQRSENDVKLLNNRLERLRMEERKALKKIEETRRRADQII-QLK-SRNQDVQLRKQLDAEYAERQRERARERLLQAKMETDTAIRRNTEAIAAQKKQEAAILREQRVLIEEHLRQQQ---QMHIERNKRVNEMIKERAAEVQREKMKQRMEHEEILQANMEMRMLeeEAKRNMAEDVVADLEEEEEIAIERLRATQEAQKAAYEELE 231
                 2222222222222222222222222222222222222222222.111.111111112233333333333333322222222222222222222222222222222222222222211111...111111222222222222222222111111111111111111111001111112222222222222222222222222222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (260 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       867  (0.21136); expected 82.0 (0.02)
Passed bias filter:                      128  (0.0312043); expected 82.0 (0.02)
Passed Vit filter:                        20  (0.00487567); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.45u 0.20s 00:00:00.65 Elapsed: 00:00:00.44
# Mc/sec: 779.94
//
Query:       MMETSP1137-20121227|9980_1  [L=66]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (66 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        33  (0.00804486); expected 82.0 (0.02)
Passed bias filter:                       32  (0.00780107); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.12s 00:00:00.23 Elapsed: 00:00:00.24
# Mc/sec: 362.97
//
Query:       MMETSP1137-20121227|9981_1  [L=460]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.9e-29   99.6   0.0    5.7e-29   99.0   0.0    1.1  1  TIGR01181 dTDP_gluc_dehyt: dTDP-glucose 4,6-dehydratase
    1.3e-27   94.5   0.0    1.8e-27   94.0   0.0    1.1  1  TIGR04180 EDH_00030: NAD dependent epimerase/dehydratase, LLPSF_EDH_00030 family
    1.4e-15   54.8   0.0    2.7e-15   53.8   0.0    1.4  1  TIGR01179 galE: UDP-glucose 4-epimerase
    1.7e-14   51.5   0.0    2.6e-14   50.9   0.0    1.2  1  TIGR02197 heptose_epim: ADP-glyceromanno-heptose 6-epimerase
    4.9e-08   30.3   0.0      7e-08   29.8   0.0    1.2  1  TIGR02622 CDP_4_6_dhtase: CDP-glucose 4,6-dehydratase
    1.1e-07   29.2   0.0    2.2e-06   25.0   0.0    2.1  2  TIGR01472 gmd: GDP-mannose 4,6-dehydratase
    0.00012   19.5   0.0    0.00021   18.8   0.0    1.3  1  TIGR01777 yfcH: TIGR01777 family protein


Domain annotation for each model (and alignments):
>> TIGR01181  dTDP_gluc_dehyt: dTDP-glucose 4,6-dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.0   0.0   9.6e-32   5.7e-29      26     312 ..      20     300 ..       8     306 .. 0.87

  Alignments for each domain:
  == domain 1    score: 99.0 bits;  conditional E-value: 9.6e-32
   TIGR01181  26 aevvvlDkLtyagnkenlkdledeerysfvkgdiadrelverllkeedvdavvnfaaeshvDrsisepeafietnvvGtytlleavrkelkevrllhistDevyGdlekdd...aeftettplaPssPysaskaasdllvrayartyglpvlitrcsnnyGpyqfp..ekliPllitnalagkklpvyGdGqqvrDwlyveDhcraielvlekgrvgevyniggeeertnlevvkiilelldkdedlieyvedrpGhDrr.yaldaskikreLgwkpkvtfeeglrktvkWyl 312
                 ++vv lD++ ++++k+n++dl d++++++++ di+ +  +       +vd + n+a  +   +   +p + ++t v+G++ +l  +++   + r+l+ st evyGd e +    +     +    +s y   k a+++l   y+r  g++++++r  n yGp  +p   +++  +i++a++g+ ++vyG+G+q r + yv+D + ++  +++++++    n+g   e t +++ ++ +++ + + ++i+y    pG+D +    d +k ++ L+w+pk+ +++g+ k+v +++
  MMETSP1137-20121227|9981_1  20 HDVVCLDNF-FTSQKTNVADLIDKPNFEIIRHDITKEFFI-------EVDQIYNMACPASPVHYQYNPVKTMKTSVLGAMNMLGLAKR--VHARILQASTSEVYGDPEISPqpeEYWGHVNCNGVRSCYDEGKRAAETLCFDYHRMXGVDIRVARIFNTYGPGMHPydGRVVSNFIVQAINGEDITVYGEGKQTRSFCYVDDLIDGLIKLMNQTETIGPVNLGNPGEFTIKQLAELAIKVTG-STSKIKYLP-LPGDDPKqRKPDITKAREILQWEPKIPLDQGILKAVAYFK 300
                 458999986.899*********************976544.......36789999998776677789*****************9999..589************9776641112233334445689***********************************88773369*********************************************9999********************999.7899***86.799996515689************************9875 PP

>> TIGR04180  EDH_00030: NAD dependent epimerase/dehydratase, LLPSF_EDH_00030 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.0   0.0   3.1e-30   1.8e-27      15     263 ..      12     257 ..       5     286 .. 0.85

  Alignments for each domain:
  == domain 1    score: 94.0 bits;  conditional E-value: 3.1e-30
   TIGR04180  15 vealvekGaevralvlynsfnswGwldevekevkkeievvlGdirdaesvkkavkgvdvvfhlaalia.iPysyvapesyvetnvkGtlnvlqaardlevekvvhtstsevyGtaqyvPidekh.....plqaqsPysaskigadqlalsfyrsfelPvaivrPfntyGPrqs..araviPtiitqilsgkkkiklGslsPtrdfnyvkdtvegfiavaesdkavGevinigsnfeisigdtvkliaeilgkeveiv 263
                 +e lv++G++v  l ++ + ++    d ++   k ++e++  di ++ ++     +vd+++ +a+  + + y y  p   ++t v G++n+l  a+ ++  +++++stsevyG  ++ P  e++         +s y   k +a++l+  ++r   + + ++r fntyGP        v+   i q ++g++    G+ + tr f yv d ++g+i++++  +++G  +n+g+  e +i+++++l +++ g++ +i+
  MMETSP1137-20121227|9981_1  12 AEXLVSQGHDVVCLDNFFTSQKTNVADLID---KPNFEIIRHDITKEFFI-----EVDQIYNMACPASpVHYQY-NPVKTMKTSVLGAMNMLGLAKRVH-ARILQASTSEVYGDPEISPQPEEYwghvnCNGVRSCYDEGKRAAETLCFDYHRMXGVDIRVARIFNTYGPGMHpyDGRVVSNFIVQAINGEDITVYGEGKQTRSFCYVDDLIDGLIKLMNQTETIGP-VNLGNPGEFTIKQLAELAIKVTGSTSKIK 257
                 699*********999999999999999888...88999999999766655.....79******98765244554.68889*************999886.69******************998622121223589***********************************8752245699999*******************************************7.7********************99988875 PP

>> TIGR01179  galE: UDP-glucose 4-epimerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.8   0.0   4.7e-18   2.7e-15      17     321 ..      13     295 ..       6     302 .. 0.85

  Alignments for each domain:
  == domain 1    score: 53.8 bits;  conditional E-value: 4.7e-18
   TIGR01179  17 rqllekgkevvvlDnlskgskealkalekitevklvegdladkekleavleeekidaviHfaaliavgEsvkePlkYYennvvntleLleamqkagvkkliFsssaavYgesekvpisEes....pln.pinpYGrsklmvErilkdlkkadkelkvviLRYFnvaGAdeegeiGeasknathliklvaevavgkrekleifGtdyptkDGtcvRDyiHveDlaeaHlaalealeeggesevynlGagqgfsvkevieavkkvsgkdikveladrRaGDpaslvadaskikrelgwkpkyddLeeiiksa 321
                   l ++g++vv lDn  +++k+ + +l    ++++++ d++ +      +   ++d +  +a  ++      +P+k  +  v +++++l + +++   +++ +s++ vYg++e +p  Ee     + n + + Y + k+++E +  d++++  + ++ + R Fn+ G  ++   G+         + +++++ g  e ++++G+      G   R + +v+Dl ++ ++ +++ e        nlG+   f +k++ e + kv+g + k++  +    Dp +   d  k+++ l+w+pk   L++ i +a
  MMETSP1137-20121227|9981_1  13 EXLVSQGHDVVCLDNFFTSQKTNVADLIDKPNFEIIRHDITKEF-----FI--EVDQIYNMACPASPVHYQYNPVKTMKTSVLGAMNMLGLAKRVH-ARILQASTSEVYGDPEISPQPEEYwghvNCNgVRSCYDEGKRAAETLCFDYHRM-XGVDIRVARIFNTYGPGMHPYDGRVV------SNFIVQAING--EDITVYGE------GKQTRSFCYVDDLIDGLIKLMNQTE---TIGPVNLGNPGEFTIKQLAELAIKVTGSTSKIKYLPLPGDDPKQRKPDITKAREILQWEPKIP-LDQGILKA 295
                 56899*********************998889*****9998654.....43..4677788888777777889*****************9887775.68999****************99622223335889*******************.***************98877666554......4467787775..789****7......666799**********998877666...46778*******************************999999999****************98.87755555 PP

>> TIGR02197  heptose_epim: ADP-glyceromanno-heptose 6-epimerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.9   0.0   4.5e-17   2.6e-14      24     310 ..      20     296 ..       8     301 .. 0.74

  Alignments for each domain:
  == domain 1    score: 50.9 bits;  conditional E-value: 4.5e-17
   TIGR02197  24 tdilvvDklrkgekllnlkdeeiadyidkeel...lerlekeelkkveavfHegAisdT..teldgellmenNyeyskellelcaekevkliYASSAavYGdseeefreekelerPlNvYgySKllfDelvrk..evlk...ekksaqvvGlryFNVyGpr.EehKgkmaSvvfklfnqikkekkvkLFksseqlkdGeqlRDFvyvkDvvkvnllllekkeksGifnvGtgkarsfndlaaavvkalgkdekieyidmPealrgkyqkfTqadleklreagykkeflsleegvkdYv 310
                 +d++ +D++ +++      ++++ad idk+++    + ++ke + +v+ +  ++  ++   ++ +  + m++ +   +++l l++  +++++ AS   vYGd e    + +e+    N+ g  + ++De  r   ++     +     +   r FN yGp    + g+   vv +++ q+ +++ + ++ + +q      +R F yv+D ++  ++l++++e+ G  n+G     + ++la+  +k +g+++ki+y+++P +  +   k  + d++k+re+++ ++++ l++g+ + v
  MMETSP1137-20121227|9981_1  20 HDVVCLDNFFTSQ------KTNVADLIDKPNFeiiRHDITKEFFIEVDQIYNMACPASPvhYQYNPVKTMKTSVLGAMNMLGLAKRVHARILQASTSEVYGDPE-ISPQPEEYWGHVNCNGV-RSCYDEGKRAaeTLCFdyhRMXGVDIRVARIFNTYGPGmHPYDGR---VVSNFIVQAINGEDITVYGEGKQ------TRSFCYVDDLIDGLIKLMNQTETIGPVNLGNPGEFTIKQLAELAIKVTGSTSKIKYLPLPGD--DP--KQRKPDITKAREILQWEPKIPLDQGILKAV 296
                 5666666665544......44566666666542213456666777899999998766651156677889********************************544.44444555556666664.4556654332002222000333334555689******72457777...56689999*******99876555......5***********************************************************99..33..34589********************97766 PP

>> TIGR02622  CDP_4_6_dhtase: CDP-glucose 4,6-dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.8   0.0   1.2e-10     7e-08      79     331 ..      61     300 ..      20     318 .. 0.75

  Alignments for each domain:
  == domain 1    score: 29.8 bits;  conditional E-value: 1.2e-10
   TIGR02622  79 eivfhlaaqplvrksYkdPletfetnvlGtvnlleavralesvkavvlvtsDkvYenkewv....wgyretdalGGhDpYsaskaaaelvvasyrksflkeankekikiasaRaGnviGGGDwaed.RlvpDviralssnkaveiR.npkavrPWqhvLepLsGYlllaeklledeaelaeafnfGPeaeenkkvvelvkkalellagkkaeiekksdkeapheaklLkLdsdkakkklgwkprlsleeaveatveWyk 331
                 + ++ +a  +   +   +P++t++t vlG++n+l  ++ ++    ++   +  vY + e       ++   ++ G    Y   k aae ++  y++          + i +aR  n  G G +  d R+v + i  + +++ +++  + k +r + +v + + G ++l      +++e+ +  n+G      + + + +++++ +++g++++i+         + k  k d++ka++ l+w+p++ l++ + + v ++k
  MMETSP1137-20121227|9981_1  61 DQIYNMACPASPVHYQYNPVKTMKTSVLGAMNMLGLAKRVH--ARILQASTSEVYGDPEISpqpeEYWGHVNCNGVRSCYDEGKRAAETLCFDYHR-------MXGVDIRVARIFNTYGPGMHPYDgRVVSNFIVQAINGEDITVYgEGKQTRSFCYVDDLIDGLIKLM-----NQTETIGPVNLGNPG---EFTIKQLAELAIKVTGSTSKIKYLP--LPGDDPKQRKPDITKAREILQWEPKIPLDQGILKAVAYFK 300
                 557788765543333347******************99987..5677888899**998765111133455688899999*****999998876654.......3478999***********9987669**998877777777777526799**************9874.....34677889****776...3444455555555555555555432..34456666789***********************999998 PP

>> TIGR01472  gmd: GDP-mannose 4,6-dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.0   0.0   3.7e-09   2.2e-06      77     271 ..      59     253 ..      37     260 .. 0.80
   2 ?    2.1   0.0     0.034        20     310     333 ..     271     294 ..     264     300 .. 0.83

  Alignments for each domain:
  == domain 1    score: 25.0 bits;  conditional E-value: 3.7e-09
   TIGR01472  77 kpteiynlaa.qshvkvsfeipeytadvdgiGtlrlleavrildlakkirfyqastselyGevkeipqkektpfn.....prspyaaaklyayyivvnyreayglfavnGilfnhesprrGetfvtrkitravakialgleeklylGnldakrdwGyakdyveam.wlmlqqdkpddyviatgettsvrefvevsfelvgit 271
                 + ++iyn+a   s v+  ++ p  t+++  +G++++l   + +    + r  qastse+yG+ +  pq e+   +      rs y   k +a  +  +y    g+      +fn   p   + +  r +++ + +   + e++   G+ +  r + y  d ++ +  lm q ++     +      +++++ e++ +++g t
  MMETSP1137-20121227|9981_1  59 EVDQIYNMACpASPVHYQYN-PVKTMKTSVLGAMNMLGLAKRV----HARILQASTSEVYGDPEISPQPEEYWGHvncngVRSCYDEGKRAAETLCFDYHRMXGVDIRVARIFNTYGPGM-HPYDGRVVSNFIVQAI-NGEDITVYGEGKQTRSFCYVDDLIDGLiKLMNQTETIGPVNLGNPGEFTIKQLAELAIKVTGST 253
                 56789999873466766665.7889999999999988766655....4689*****************99854331122369***********************9999999**999854.5677788877777654.55666677999999********999752799999999998898888899999999998888865 PP

  == domain 2    score: 2.1 bits;  conditional E-value: 0.034
   TIGR01472 310 Gdatkakeklgwkrevslkelvke 333
                  d tka+e l+w++++ l++ + +
  MMETSP1137-20121227|9981_1 271 PDITKAREILQWEPKIPLDQGILK 294
                 689************999886655 PP

>> TIGR01777  yfcH: TIGR01777 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.0   3.7e-07   0.00021     188     239 ..     197     248 ..     186     263 .. 0.86

  Alignments for each domain:
  == domain 1    score: 18.8 bits;  conditional E-value: 3.7e-07
   TIGR01777 188 lGsGrqwlsWihleDlvklilfaleneevsGvvNataPepvrnkefakalak 239
                  G+G+q  s+  ++Dl++ +  +++++e+ G+vN+  P   + k++a+   k
  MMETSP1137-20121227|9981_1 197 YGEGKQTRSFCYVDDLIDGLIKLMNQTETIGPVNLGNPGEFTIKQLAELAIK 248
                 59**************************************999999875444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (460 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       121  (0.0294978); expected 82.0 (0.02)
Passed bias filter:                      103  (0.0251097); expected 82.0 (0.02)
Passed Vit filter:                        20  (0.00487567); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.41u 0.13s 00:00:00.54 Elapsed: 00:00:00.53
# Mc/sec: 1145.57
//
Query:       MMETSP1137-20121227|9982_1  [L=98]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (98 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        53  (0.0129205); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.18s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 446.03
//
Query:       MMETSP1137-20121227|9983_1  [L=311]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.9e-76  253.2   0.0    5.9e-76  253.0   0.0    1.1  1  TIGR00755 ksgA: dimethyladenosine transferase
      6e-06   24.4   0.0    2.1e-05   22.6   0.0    1.8  2  TIGR02469 CbiT: precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit
    6.6e-06   23.8   0.0    1.1e-05   23.1   0.0    1.3  1  TIGR00537 hemK_rel_arch: putative methylase
    8.4e-06   23.6   0.0    1.4e-05   22.9   0.0    1.3  1  TIGR00080 pimt: protein-L-isoaspartate O-methyltransferase
    6.1e-05   20.2   0.0     0.0001   19.5   0.0    1.3  1  TIGR01934 MenG_MenH_UbiE: ubiquinone/menaquinone biosynthesis methyltransferase
    0.00011   19.6   0.0    0.00016   19.0   0.0    1.2  1  TIGR02021 BchM-ChlM: magnesium protoporphyrin O-methyltransferase
    0.00061   17.5   0.0      0.001   16.7   0.0    1.3  1  TIGR02072 BioC: biotin biosynthesis protein BioC
    0.00086   16.1   0.0     0.0015   15.2   0.0    1.3  1  TIGR00479 rumA: 23S rRNA (uracil-5-)-methyltransferase RumA
      0.001   16.4   0.0     0.0015   15.8   0.0    1.2  1  TIGR03534 RF_mod_PrmC: protein-(glutamine-N5) methyltransferase, release factor-specific
  ------ inclusion threshold ------
      0.011   13.1   0.0      0.016   12.5   0.0    1.2  1  TIGR00406 prmA: ribosomal protein L11 methyltransferase
      0.012   13.8   0.0       0.61    8.4   0.0    2.5  2  TIGR02609 doc_partner: putative addiction module antidote
      0.012   13.9   0.0      0.025   12.9   0.0    1.5  1  TIGR01444 fkbM_fam: methyltransferase, FkbM family
      0.019   12.2   0.1       0.15    9.2   0.0    2.2  3  TIGR00091 TIGR00091: tRNA (guanine-N(7)-)-methyltransferase


Domain annotation for each model (and alignments):
>> TIGR00755  ksgA: dimethyladenosine transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  253.0   0.0   1.9e-78   5.9e-76       2     254 ..      15     297 ..      14     299 .. 0.94

  Alignments for each domain:
  == domain 1    score: 253.0 bits;  conditional E-value: 1.9e-78
   TIGR00755   2 rpkkslGQnflidesvlqkiveaaeveesdvvlEiGpGlGaLTeellekakkvvaiEiDkrlaekLrkkle...leekleviegDalkldleefakkekvvsNlPYnissplvfkll.kkkklkeavlmvQkEvaerlvAkpgskeYgrlsvlvqllaevelvlkvppsaFyPkPkVeSavvrlekkeekplavkdeellekllkaaFsqrrKtlrnnlkk....kllkkekleevleqekldek...........................kraeklsiedflklln 254
                 ++++slGQ++l+++ v   ++e+a v++ d+vlEiGpG+G+LT +lle akkv+a+E D+r++ +L+k+++     +kl++i  D+lkldl+ f+   ++v+N+PY+issplvfkll +k++++ avlmvQ+E+a rl+Ak g++ Y+rlsv+ qll +v++++kv+++ F+P+PkV+S+vvrle+ +    +  ++ +++ l++++F++++Ktl++ +++    +l++ +  +++  + +++++                           +r  kl+++df+ ll 
  MMETSP1137-20121227|9983_1  15 ELHHSLGQHLLKNPLVTAAMIEKAGVKSTDTVLEIGPGTGNLTLKLLEIAKKVIAVEHDPRMVVELQKRVQgteFAHKLQLIXSDVLKLDLPFFN---LCVANIPYQISSPLVFKLLaHKPRFRCAVLMVQREFALRLCAKAGDELYCRLSVNTQLLSKVDHLMKVSKNSFRPPPKVDSSVVRLEPMHP--PPPVNFIEWDGLVRLCFNRKNKTLSAIFRQkpvlQLMSDNLKTHLAMAGGMNDNpaeeampevpdvkexvnsvledsgygeQRSTKLELDDFMALLA 297
                 5789******************************************************************9888899***************887...*******************66********************************************************************96..5799*************************98888777777666777777777778999999999999999999999999999999999999999986 PP

>> TIGR02469  CbiT: precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.6   0.0   6.8e-08   2.1e-05       7      74 ..      30      96 ..      25     109 .. 0.83
   2 ?   -1.4   0.0       1.8   5.7e+02      44      68 ..     222     246 ..     213     269 .. 0.76

  Alignments for each domain:
  == domain 1    score: 22.6 bits;  conditional E-value: 6.8e-08
   TIGR02469  7 vRaltLakLrlkkgdvllDiGaGtGsvtieaarlvpkgrvyaierneealelieeNlrrf.gvsnieiv 74
                v a +++k  +k +d++l+iG GtG +t+ + ++++k  v+a+e ++  +  +++ ++    +++ +++
  MMETSP1137-20121227|9983_1 30 VTAAMIEKAGVKSTDTVLEIGPGTGNLTLKLLEIAKK--VIAVEHDPRMVVELQKRVQGTeFAHKLQLI 96
                6788999***************************999..89*******999988887766334445555 PP

  == domain 2    score: -1.4 bits;  conditional E-value: 1.8
   TIGR02469  44 grvyaierneealelieeNlrrfgv 68 
                   + ai r++ +l+l++ Nl+ + +
  MMETSP1137-20121227|9983_1 222 KTLSAIFRQKPVLQLMSDNLKTHLA 246
                 5567899999999999999998744 PP

>> TIGR00537  hemK_rel_arch: putative methylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.1   0.0   3.4e-08   1.1e-05      18      92 ..      41     117 ..      29     122 .. 0.83

  Alignments for each domain:
  == domain 1    score: 23.1 bits;  conditional E-value: 3.4e-08
   TIGR00537  18 lknddvleiGaGtGlvairlkekgkkivatdinPfavkllkenakln..nveldvlesdlfenvegkfdvilfnpPy 92 
                 + +d vleiG GtG ++ +l e +kk++a++ +P  v +l++  +    + +l+++ sd+++     f++ + n Py
  MMETSP1137-20121227|9983_1  41 KSTDTVLEIGPGTGNLTLKLLEIAKKVIAVEHDPRMVVELQKRVQGTefAHKLQLIXSDVLKLDLPFFNLCVANIPY 117
                 34566*******************************999998554331157899******99888899999999999 PP

>> TIGR00080  pimt: protein-L-isoaspartate O-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.9   0.0   4.3e-08   1.4e-05      59     126 ..      24      88 ..      10     127 .. 0.88

  Alignments for each domain:
  == domain 1    score: 22.9 bits;  conditional E-value: 4.3e-08
   TIGR00080  59 tisaphmvakmlelLelkagakvLeiGtGsGYqaavlaelvgrdglvvsierieeLvekaerrlkkLe 126
                  + +p++ a+m+e   +k+++ vLeiG G+G ++  l e+ ++   v+++e+ + +v + ++r++  e
  MMETSP1137-20121227|9983_1  24 LLKNPLVTAAMIEKAGVKSTDTVLEIGPGTGNLTLKLLEIAKK---VIAVEHDPRMVVELQKRVQGTE 88 
                 467899*************************************...*************999998655 PP

>> TIGR01934  MenG_MenH_UbiE: ubiquinone/menaquinone biosynthesis methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.0   3.3e-07    0.0001      30     102 ..      33     105 ..      18     118 .. 0.87

  Alignments for each domain:
  == domain 1    score: 19.5 bits;  conditional E-value: 3.3e-07
   TIGR01934  30 kavkkieeekeekvlDvatGtGdlaielakkaeakvtgvDlseemLevakkkakek.eeanvefieadaeeLpf 102
                 ++++k++++++++vl +  GtG+l+++l + a +kv++v   ++m+   +k+++ +   ++++ i +d+ +L +
  MMETSP1137-20121227|9983_1  33 AMIEKAGVKSTDTVLEIGPGTGNLTLKLLEIA-KKVIAVEHDPRMVVELQKRVQGTeFAHKLQLIXSDVLKLDL 105
                 678889999*********************88.89******************99877789*******998865 PP

>> TIGR02021  BchM-ChlM: magnesium protoporphyrin O-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.0   5.1e-07   0.00016      47     118 ..      34     107 ..      20     116 .. 0.86

  Alignments for each domain:
  == domain 1    score: 19.0 bits;  conditional E-value: 5.1e-07
   TIGR02021  47 wlpkd.slkGkkvlDAGCGtGllsielAkrGaivkavDiseklvelarkraekedeaenveFevndlesle.gk 118
                 +++k    +  +vl+ G GtG l+ +l +   +v av+  +++v + +kr + ++ a++++   +d+++l+   
  MMETSP1137-20121227|9983_1  34 MIEKAgVKSTDTVLEIGPGTGNLTLKLLEIAKKVIAVEHDPRMVVELQKRVQGTEFAHKLQLIXSDVLKLDlPF 107
                 555554556779******************************************************99987444 PP

>> TIGR02072  BioC: biotin biosynthesis protein BioC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0   3.3e-06     0.001      25     104 ..      33     114 ..       4     120 .. 0.80

  Alignments for each domain:
  == domain 1    score: 16.7 bits;  conditional E-value: 3.3e-06
   TIGR02072  25 ellkekrkfepakvLdiGcGtGiltrallkrfpqaelialDiseemleqakkkls......nvqficgdieklplekksfDlivSn 104
                 +++++ +   + +vL+iG GtG lt +ll+  +++  ia+   + m   ++k+++      ++q i  d+ kl+l    f l v+n
  MMETSP1137-20121227|9983_1  33 AMIEKAGVKSTDTVLEIGPGTGNLTLKLLEIAKKV--IAVEHDPRMVVELQKRVQgtefahKLQLIXSDVLKLDLP--FFNLCVAN 114
                 4566666444579*****************99888..999999999999999999999998889999999888853..34566555 PP

>> TIGR00479  rumA: 23S rRNA (uracil-5-)-methyltransferase RumA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0   4.9e-06    0.0015     275     333 ..      28      82 ..       6      93 .. 0.80

  Alignments for each domain:
  == domain 1    score: 15.2 bits;  conditional E-value: 4.9e-06
   TIGR00479 275 seqteklvdralealelqgeekvvDaycGvGtftlplAkqaksvvgvevvkesvekakr 333
                 + +t      + e + ++  ++v+++  G G++tl l + ak+v++ve  + +v + ++
  MMETSP1137-20121227|9983_1  28 PLVTAA----MIEKAGVKSTDTVLEIGPGTGNLTLKLLEIAKKVIAVEHDPRMVVELQK 82 
                 433333....4466789********************************9999987766 PP

>> TIGR03534  RF_mod_PrmC: protein-(glutamine-N5) methyltransferase, release factor-specific
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0   4.9e-06    0.0015      79     166 ..      33     117 ..      27     124 .. 0.83

  Alignments for each domain:
  == domain 1    score: 15.8 bits;  conditional E-value: 4.9e-06
   TIGR03534  79 aaleelkkkeklkvlDlgtGsGaIalalakelpdakviavDiseeAlkvarkNakrlglke.veflksdllealeekgkfdlivsNPPY 166
                 a++e++  k++ +vl++g G+G ++l l++     kviav+ +++ +   +k ++  + ++ ++++ sd+l +l +   f+l v+N PY
  MMETSP1137-20121227|9983_1  33 AMIEKAGVKSTDTVLEIGPGTGNLTLKLLEI--AKKVIAVEHDPRMVVELQKRVQGTEFAHkLQLIXSDVL-KL-DLPFFNLCVANIPY 117
                 4455554444569************999998..5689*********9999999999999888********9.45.4677********** PP

>> TIGR00406  prmA: ribosomal protein L11 methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   5.1e-05     0.016     157     233 ..      40     115 ..      31     132 .. 0.83

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 5.1e-05
   TIGR00406 157 dlkdkkviDvGcGSGiLsiaalklgaakvvavDiDplavesarkNlelNqvsdllqvklenleqkiegkaDvivaNi 233
                 ++  ++v+++G G G L++ +l   a+kv+av+ Dp  v + +k ++  +  ++lq++ ++  +     ++  vaNi
  MMETSP1137-20121227|9983_1  40 VKSTDTVLEIGPGTGNLTLKLLEI-AKKVIAVEHDPRMVVELQKRVQGTEFAHKLQLIXSDVLKLDLPFFNLCVANI 115
                 456699**********99877654.899*****************99999999999999966665555667777877 PP

>> TIGR02609  doc_partner: putative addiction module antidote
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.0      0.11        35      18      49 ..      34      67 ..      30      91 .. 0.76
   2 ?    8.4   0.0    0.0019      0.61      11      51 ..     138     179 ..     136     185 .. 0.86

  Alignments for each domain:
  == domain 1    score: 2.7 bits;  conditional E-value: 0.11
   TIGR02609 18 vleslglkeGDtl.yvdeeegglklkrvke.eke 49
                ++e  g+k +Dt+  + +  g l+lk  +  +k 
  MMETSP1137-20121227|9983_1 34 MIEKAGVKSTDTVlEIGPGTGNLTLKLLEIaKKV 67
                57889*******9999999999999877664444 PP

  == domain 2    score: 8.4 bits;  conditional E-value: 0.0019
   TIGR02609  11 vvtlpkEvleslglkeGDtlyvdeeegglklkrvke.ekele 51 
                 v+++ +E++ +l +k+GD+ly   + +  +l++v+  +k ++
  MMETSP1137-20121227|9983_1 138 VLMVQREFALRLCAKAGDELYCRLSVNTQLLSKVDHlMKVSK 179
                 677889***************999999999999999888766 PP

>> TIGR01444  fkbM_fam: methyltransferase, FkbM family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   7.8e-05     0.025       1      48 [.      45      90 ..      45     104 .. 0.89

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 7.8e-05
   TIGR01444  1 vviDiGAniGdvslvfaravaegrviafEPlpdllekleenvklnnlk 48
                +v+ iG   G+++l +++ +++  via+E +p+++ +l+++v+ +++ 
  MMETSP1137-20121227|9983_1 45 TVLEIGPGTGNLTLKLLEIAKK--VIAVEHDPRMVVELQKRVQGTEFA 90
                7999*****************8..******************999874 PP

>> TIGR00091  TIGR00091: tRNA (guanine-N(7)-)-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0       1.6   5.1e+02      35      51 ..       3      19 ..       2      42 .. 0.75
   2 ?    9.2   0.0   0.00049      0.15      15      84 ..      41     109 ..      29     126 .. 0.86
   3 ?   -0.0   0.0      0.33     1e+02     122     193 ..     228     299 ..     214     300 .. 0.81

  Alignments for each domain:
  == domain 1    score: -2.3 bits;  conditional E-value: 1.6
   TIGR00091 35 AkqnpeknflGiEiekp 51
                A + p    +G+E++++
  MMETSP1137-20121227|9983_1  3 AAAAPYHRHVGVELHHS 19
                67788899999999764 PP

  == domain 2    score: 9.2 bits;  conditional E-value: 0.00049
   TIGR00091  15 nkkplvleiGcGkGrfliklAkqnpeknflGiEiekpivlkainkaeklglk.Nlkvlcgdakkllekfip 84 
                 ++  +vleiG G G++ +kl +    k+++ +E  +++v++  ++++  ++   l+++  d  kl+  f++
  MMETSP1137-20121227|9983_1  41 KSTDTVLEIGPGTGNLTLKLLEI--AKKVIAVEHDPRMVVELQKRVQGTEFAhKLQLIXSDVLKLDLPFFN 109
                 56789***********9999765..57899********************9989*******9999888775 PP

  == domain 3    score: -0.0 bits;  conditional E-value: 0.33
   TIGR00091 122 LkkgGvielktDveklfedmlkvlsendlfeeiskeadlnnsplkeariiteleqrvlelgepvfklllekl 193
                  +++ v++l +D+ k +  m   +++n+ +e + + +d+++   ++ +     eqr+ +l+ + f +ll k+
  MMETSP1137-20121227|9983_1 228 FRQKPVLQLMSDNLKTHLAMAGGMNDNPAEEAMPEVPDVKEXVNSVLEDSGYGEQRSTKLELDDFMALLAKF 299
                 566778999999999999999999999999999999999888888877777788899999888888887775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (311 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       113  (0.0275475); expected 82.0 (0.02)
Passed bias filter:                      110  (0.0268162); expected 82.0 (0.02)
Passed Vit filter:                        22  (0.00536324); expected 4.1 (0.001)
Passed Fwd filter:                        13  (0.00316919); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.31u 0.17s 00:00:00.48 Elapsed: 00:00:00.33
# Mc/sec: 1243.90
//
Query:       MMETSP1137-20121227|9984_1  [L=144]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (144 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        56  (0.0136519); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.17s 00:00:00.32 Elapsed: 00:00:00.25
# Mc/sec: 760.26
//
Query:       MMETSP1137-20121227|9985_1  [L=190]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.3e-47  157.2   0.1    8.9e-47  157.0   0.0    1.0  1  TIGR01383 not_thiJ: DJ-1 family protein
      6e-14   49.8   0.0    7.3e-14   49.5   0.0    1.1  1  TIGR01382 PfpI: intracellular protease, PfpI family


Domain annotation for each model (and alignments):
>> TIGR01383  not_thiJ: DJ-1 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  157.0   0.0   4.3e-50   8.9e-47       2     175 ..       4     181 ..       3     185 .. 0.90

  Alignments for each domain:
  == domain 1    score: 157.0 bits;  conditional E-value: 4.3e-50
   TIGR01383   2 vlillaeGaEevEavivvdvLrRagikvtvavvsledklavkgsrgvklladksled..veeeefDvivLpGGlpGaenlkdsklleellkkqeskgklvAAICaaPivlla..aevllgkkkatcypslkekllne.....eysvekavvvdgkliTsrGpgtaieFalelvelLaGkevae 175
                 +l+++a+G+Ee+Ea ++v+vLrRag +vt+a+v++ + + v+++r+  l++d+ +e   + ++++D+i LpGG+pGa+nl+  +     l++q++++k ++AICaaP+v++a  a  ll  ++atc+p + ekl+++     ++ ++ +v+ d+  +TsrGpgtaieFal++vel++G evae
  MMETSP1137-20121227|9985_1   4 ALVPIAPGSEELEATAIVNVLRRAGWSVTLASVGVPGMDPVSCARNQLLVPDAAIEApgILDSDYDAILLPGGMPGASNLAAXER----LRRQAAEKKWYGAICAAPAVVFAgaAADLLP-QQATCHPAFIEKLEAAgcdanRFLDRVVVDDDRGCVTSRGPGTAIEFALKVVELVQGSEVAE 181
                 589****************************************************96448899*****************98766....567999*************997522555666.7************988776645557778888999**************************98 PP

>> TIGR01382  PfpI: intracellular protease, PfpI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.5   0.0   3.5e-17   7.3e-14       8     168 ..      10     174 ..       4     175 .. 0.82

  Alignments for each domain:
  == domain 1    score: 49.5 bits;  conditional E-value: 3.5e-17
   TIGR01382   8 defedeEllePlkalkeaGheVtvvs.gkekgeivkekkgakvtvdatld..dvdaeeydalvipGGra.peylrldekvielvrefaekgKpvaaIChgpqlL...isAdvlrGkkltaypaiaedvknAGaeyvdirevvvvdan..lvtakvpadlpafvseilkll 168
                  + e+ E +  +++l++aG +Vt++s g    + v   +++ +  da ++  ++ +++yda+++pGG   + +l   e++    r  a + K   aIC +p +    ++Ad+l  +++t+ pa +e +  AG +  +  + vvvd++   vt++ p+ +  f  ++++l+
  MMETSP1137-20121227|9985_1  10 PGSEELEATAIVNVLRRAGWSVTLASvGVPGMDPVSCARNQLLVPDAAIEapGILDSDYDAILLPGGMPgASNLAAXERL----RRQAAEKKWYGAICAAPAVVfagAAADLL-PQQATCHPAFIEKLEAAGCDANRFLDRVVVDDDrgCVTSRGPGTAIEFALKVVELV 174
                 567888999999**************988889999967777777788877447**************9878888776654....445667799********998333345655.699****************9999887777777668*****************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (190 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        93  (0.0226719); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.20u 0.15s 00:00:00.35 Elapsed: 00:00:00.28
# Mc/sec: 895.64
//
Query:       MMETSP1137-20121227|9986_1  [L=149]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (149 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        58  (0.0141394); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.44
# Mc/sec: 446.96
//
Query:       MMETSP1137-20121227|9987_1  [L=356]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   6.2e-112  371.4   0.0     9e-112  370.9   0.0    1.2  1  TIGR01452 PGP_euk: phosphoglycolate/pyridoxal phosphate phosphatase family
    1.4e-62  209.5   0.0    1.7e-62  209.2   0.0    1.1  1  TIGR01460 HAD-SF-IIA: HAD hydrolase, family IIA
    3.2e-45  152.4   0.0    5.4e-43  145.1   0.0    2.1  1  TIGR01457 HAD-SF-IIA-hyp2: HAD hydrolase, TIGR01457 family
    2.5e-17   60.9   0.0    2.2e-08   31.6   0.0    2.1  2  TIGR01458 HAD-SF-IIA-hyp3: HAD hydrolase, TIGR01458 family
    6.2e-15   53.1   0.2    1.6e-13   48.4   0.2    2.1  1  TIGR01459 HAD-SF-IIA-hyp4: HAD hydrolase, TIGR01459 family
    2.3e-13   48.3   0.0      5e-08   31.0   0.0    2.3  2  TIGR01662 HAD-SF-IIIA: HAD hydrolase, family IIIA
    4.8e-11   40.3   0.0    1.8e-06   25.4   0.0    2.2  2  TIGR01668 YqeG_hyp_ppase: HAD phosphatase, family IIIA
    9.3e-10   36.5   0.0    5.7e-08   30.6   0.0    2.1  2  TIGR02253 CTE7: HAD hydrolase, TIGR02253 family
    5.1e-07   27.2   0.0    1.2e-06   25.9   0.0    1.6  2  TIGR02254 YjjG/YfnB: HAD hydrolase, TIGR02254 family
    1.5e-06   25.1   0.0    0.00087   16.1   0.0    2.4  2  TIGR01456 CECR5: HAD hydrolase, TIGR01456 family
    6.1e-06   24.0   0.1    2.5e-05   22.1   0.0    2.1  2  TIGR01656 Histidinol-ppas: histidinol-phosphate phosphatase domain
    9.7e-06   23.9   1.0     0.0028   15.9   0.0    3.0  3  TIGR01549 HAD-SF-IA-v1: HAD hydrolase, family IA, variant 1
    0.00035   18.2   0.0     0.0029   15.2   0.0    2.1  2  TIGR02252 DREG-2: HAD hydrolase, REG-2-like, family IA
     0.0011   16.4   0.0      0.071   10.6   0.0    2.5  3  TIGR01454 AHBA_synth_RP: AHBA synthesis associated protein
     0.0013   16.1   0.0       0.82    7.0   0.0    2.2  2  TIGR01449 PGP_bact: phosphoglycolate phosphatase, bacterial
     0.0018   16.0   0.0      0.005   14.5   0.0    1.7  2  TIGR01993 Pyr-5-nucltdase: pyrimidine 5'-nucleotidase
     0.0023   15.5   0.0        0.9    7.0   0.0    2.3  2  TIGR00213 GmhB_yaeD: D,D-heptose 1,7-bisphosphate phosphatase
     0.0027   15.6   0.0      0.096   10.5   0.0    2.2  2  TIGR01428 HAD_type_II: haloacid dehalogenase, type II
     0.0065   13.5   0.0      0.012   12.6   0.0    1.3  1  TIGR02244 HAD-IG-Ncltidse: HAD superfamily (subfamily IG) hydrolase, 5'-nucleotidase
  ------ inclusion threshold ------
      0.021   12.9   0.3        5.9    4.9   0.0    3.1  3  TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3
      0.021   12.2   0.0      0.057   10.8   0.0    1.7  2  TIGR01261 hisB_Nterm: histidinol-phosphatase


Domain annotation for each model (and alignments):
>> TIGR01452  PGP_euk: phosphoglycolate/pyridoxal phosphate phosphatase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  370.9   0.0  4.6e-114    9e-112       3     278 ..      78     352 ..      76     353 .. 0.98

  Alignments for each domain:
  == domain 1    score: 370.9 bits;  conditional E-value: 4.6e-114
   TIGR01452   3 etfifdcdGvlWlGekvvpGaPelldrlakagkkvlfvtnnstksraeyakklaklGlnsvaeelvssalvaaaller..aidankkvyviGeeGlreeldekGiryvGdpsekdkkaarksgefmkleedvgavvvGydkhfdyvklrkasaylre.pgvllvatnrdevtplsdeseipgaGslvaaiktasgreplvvGkPsdfmleyikeklsidPartlmvGdrletdilfGkdgGlktvlvlsGvsrleeiqevlaaedddlvPdyvveslad 278
                 + fifdcdGv+W+G++v++G+P +ld+l+kagkkv+fvtnnstksr +y  k+++lGln  aee++ss+++aaa+le+    +++k vyviGe G+ eeld+ G+ ++G+p+++dkk+  ksg  + ++edvgav+vG+d++++y+k+++a +++ e pg+ ++ tn d+vt+l+d++e++g+G++++aik++++rep  vGkPs+ m++y+ ek++i+ +r+ mvGdrl+tdilfG++ Glk  l+lsGv+    +qe+l ++++++ Pdy+v+s+a+
  MMETSP1137-20121227|9987_1  78 DVFIFDCDGVIWKGDSVIDGVPAVLDMLRKAGKKVFFVTNNSTKSRKGYLGKFTSLGLNVEAEEIFSSSFAAAAYLEQtkFKETGKXVYVIGEVGIEEELDLIGVPHIGGPADADKKVELKSGYALPHDEDVGAVIVGFDRYINYYKIQYAQLCINEnPGCEFIVTNLDAVTHLTDAQEWAGNGAMAGAIKGCTNREPTLVGKPSPLMIDYMVEKYGIERDRICMVGDRLDTDILFGQNNGLKSCLTLSGVT----TQEKLFSPENKIKPDYYVDSIAQ 352
                 89***************************************************************************95557899************************************************************************9**********************************************************************************************....********************986 PP

>> TIGR01460  HAD-SF-IIA: HAD hydrolase, family IIA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  209.2   0.0   8.8e-65   1.7e-62       1     246 []      80     327 ..      80     327 .. 0.97

  Alignments for each domain:
  == domain 1    score: 209.2 bits;  conditional E-value: 8.8e-65
   TIGR01460   1 flfDidGVlvrgkkpipgalealnrlrakgkpvvfvTNnsgrseedlaeklssllgvdvspeqiitshsvtkellk....kfenervlligegelreslenlgfknvvtvddlrkivedidvedleaekiqaavlvgepsdlsydelakaakllseg.kvpfiaaneeklerlgdgafrlglgsilekikeksgreeivvGKPspalykaaeellkarakrrkvlmvGDnlrtDvlgAkeaGldslLvltG 246
                 f+fD+dGV+++g+++i g+++ l++lr++gk+v+fvTNns++s++++  k+ s lg++v++e+i +s+ +++++l+    k  ++ v++ige  ++e+l+  g+ + +   d++k ve  +  +l ++  ++av+vg++++++y+++++a  +++e+  ++fi++n +++++l+d++ ++g+g+++ +ik+ + re+++vGKPsp++++++ e+ + +++r+   mvGD+l+tD+l+++++Gl+s+L+l+G
  MMETSP1137-20121227|9987_1  80 FIFDCDGVIWKGDSVIDGVPAVLDMLRKAGKKVFFVTNNSTKSRKGYLGKFTS-LGLNVEAEEIFSSSFAAAAYLEqtkfKETGKXVYVIGEVGIEEELDLIGVPHIGGPADADKKVELKSGYALPHDEDVGAVIVGFDRYINYYKIQYAQLCINENpGCEFIVTNLDAVTHLTDAQEWAGNGAMAGAIKGCTNREPTLVGKPSPLMIDYMVEKYGIERDRI--CMVGDRLDTDILFGQNNGLKSCLTLSG 327
                 9****************************************************.***********************99988999*********************************555467779999*************************999**************************************************************96..6*************************9 PP

>> TIGR01457  HAD-SF-IIA-hyp2: HAD hydrolase, TIGR01457 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  145.1   0.0   2.8e-45   5.4e-43       4     248 ..      80     352 ..      78     353 .. 0.87

  Alignments for each domain:
  == domain 1    score: 145.1 bits;  conditional E-value: 2.8e-45
   TIGR01457   4 ylidldGtlykGkekieeavefvkelkkrdvpylfvtnnstrtpesvaellasldipatkeqvftaslatadyladlkke...ksvyviGeeGlkeaik...................eaGlvvd.dekpdyvvvGldraisyeklakaalairk..Gakfistngdlai.pterGllpGnGsliavlevatgvkpvviGkpeaiilekalkrlGtekeetllvGdnyatdilaGidaGidtllvhtGvtkkeelk..dkeakptyvveslae 248
                 ++ d dG ++kG  +i+   + +  l+k +   +fvtnnst++ +    +++sl ++   e++f++s+a a yl+++k +   k vyviGe G++e ++                   ++G+    de+   v+vG+dr i+y k+  a l i++  G +fi tn d+    t+     GnG+++  ++ +t+ +p ++Gkp++++++  +++ G+e++ + +vGd  +tdil G ++G+++ l  +Gvt++e+l   ++++kp y v+s+a+
  MMETSP1137-20121227|9987_1  80 FIFDCDGVIWKGDSVIDGVPAVLDMLRKAGKKVFFVTNNSTKSRKGYLGKFTSLGLNVEAEEIFSSSFAAAAYLEQTKFKetgKXVYVIGEVGIEEELDligvphiggpadadkkvelKSGYALPhDEDVGAVIVGFDRYINYYKIQYAQLCINEnpGCEFIVTNLDAVThLTDAQEWAGNGAMAGAIKGCTNREPTLVGKPSPLMIDYMVEKYGIERDRICMVGDRLDTDILFGQNNGLKSCLTLSGVTTQEKLFspENKIKPDYYVDSIAQ 352
                 889************************************************************************9985522367*********99875223333333322222232346776655899999*************9999888865459********97551699999*****************************************************************************96336889********997 PP

>> TIGR01458  HAD-SF-IIA-hyp3: HAD hydrolase, TIGR01458 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.6   0.0   1.1e-10   2.2e-08       4      87 ..      80     159 ..      77     168 .. 0.89
   2 !   27.1   0.0   2.6e-09     5e-07     158     248 ..     259     351 ..     249     354 .. 0.84

  Alignments for each domain:
  == domain 1    score: 31.6 bits;  conditional E-value: 1.1e-10
   TIGR01458   4 vlldisGvlydsdaksgvavpgsaeavkrlkraslkvrfvtnekkeskrelverlqrlgfdiseeevitpapaaaqllkekklr 87 
                 ++ d  Gv+++ d      + g    +++l++a  kv fvtn++ +s++  ++++  lg+++  ee++++  aaa +l++ k +
  MMETSP1137-20121227|9987_1  80 FIFDCDGVIWKGDS----VIDGVPAVLDMLRKAGKKVFFVTNNSTKSRKGYLGKFTSLGLNVEAEEIFSSSFAAAAYLEQTKFK 159
                 56777788777666....7778888899**************************************************998865 PP

  == domain 2    score: 27.1 bits;  conditional E-value: 2.6e-09
   TIGR01458 158 dvGpfvkaleyatdikaevvGkPskeffkealralGvepeeavmiGddlvddvGGaqavGmrgvqvrtGkyrpsdee..kievkpdltvdsla 248
                 + G+ + a++ +t+ + + vGkPs+      ++  G+e +++ m+Gd l  d+   q+ G+++ +  +G          + ++kpd +vds+a
  MMETSP1137-20121227|9987_1 259 GNGAMAGAIKGCTNREPTLVGKPSPLMIDYMVEKYGIERDRICMVGDRLDTDILFGQNNGLKSCLTLSGVTTQEKLFspENKIKPDYYVDSIA 351
                 67999********************************************************99987777654433220133467888888876 PP

>> TIGR01459  HAD-SF-IIA-hyp4: HAD hydrolase, TIGR01459 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.4   0.2   8.4e-16   1.6e-13       4     241 ..      73     325 ..      71     326 .. 0.70

  Alignments for each domain:
  == domain 1    score: 48.4 bits;  conditional E-value: 8.4e-16
   TIGR01459   4 liedYdvFLlDlwGvvidGqeayPGavealaklkaegktvylvsnssksva.eleatlkklGiaadlfegivssGevavrsidelkksaelrrgiiyllg.srendrialaelrevl..aedkadaeLivivasenek......ldldefeellapl.aarkvp......flCanPDrvv.vsagrtrygaGelaelfeelGG.kviyvGkPypaifdkalkeleerekrrvllvGDslvtDiaganavgidtalvl 241
                 l ++ dvF++D  Gv+  G+    G+ + l  l+++gk v++v+n s + +     ++ +lG++ +  e i ss   a  + +e  k  e     +y +g ++ ++   l +++     a + +++eL  ++a   +          d + + +++  a+  +       f+ +n D v  ++ ++   g G +a  ++     +   vGkP p + d + ++ + +e++r+ +vGD l tDi+ +++ g+ + l l
  MMETSP1137-20121227|9987_1  73 LLDNTDVFIFDCDGVIWKGDSVIDGVPAVLDMLRKAGKKVFFVTNNSTKSRkGYLGKFTSLGLNVEA-EEIFSSS-FAAAAYLEQTKFKET-GKXVYVIGeVGIEEELDLIGVPHIGgpADADKKVELKSGYALPHDEdvgaviVGFDRYINYYKIQyAQLCINenpgceFIVTNLDAVThLTDAQEWAGNGAMAGAIKGCTNrEPTLVGKPSPLMIDYMVEKYG-IERDRICMVGDRLDTDILFGQNNGLKSCLTL 325
                 77889**************************************986655550567789******665.5555555.466666665554444.444455541455666777777766411444456777777763332212222334555555555552222221111333899****99725667777799********877615789**********9988875.99*******************9999998865 PP

>> TIGR01662  HAD-SF-IIIA: HAD hydrolase, family IIIA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0     2e-05    0.0038       3      52 ..      80     120 ..      78     148 .. 0.82
   2 !   31.0   0.0   2.6e-10     5e-08      88     136 ..     275     322 ..     240     327 .. 0.83

  Alignments for each domain:
  == domain 1    score: 15.2 bits;  conditional E-value: 2e-05
   TIGR01662   3 vvlDlDgtLiddvdyvteedeaelypevidalaelkkeGykvvivtNqsg 52 
                 +++D Dg++        + d    +++v++ l +l+k+G+kv+ vtN+s 
  MMETSP1137-20121227|9987_1  80 FIFDCDGVIW-------KGDSV--IDGVPAVLDMLRKAGKKVFFVTNNST 120
                 79*******9.......33334..69**********************93 PP

  == domain 2    score: 31.0 bits;  conditional E-value: 2.6e-10
   TIGR01662  88 kceyrKpktgmleealkrlneidakesvvvGDavltDleaakrvGlatv 136
                    + Kp++ m++++++++  i+ +++++vGD++ tD+ +++++Gl+  
  MMETSP1137-20121227|9987_1 275 PTLVGKPSPLMIDYMVEKY-GIERDRICMVGDRLDTDILFGQNNGLKSC 322
                 45677**************.8*************************975 PP

>> TIGR01668  YqeG_hyp_ppase: HAD phosphatase, family IIIA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.8   0.0   7.2e-05     0.014      14     115 ..      68     169 ..      58     172 .. 0.76
   2 !   25.4   0.0   9.5e-09   1.8e-06      91     144 ..     280     333 ..     261     341 .. 0.90

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 7.2e-05
   TIGR01668  14 eltiellkkkdikgvvlDkDntlvepdsnevapalkewieelkaaGlkllivSNnageqrvkalekelgitvlshavKkpgkafrra..lkemglt..seqvvvvG 115
                 e++ ell + d+   ++D D  +  ++  +v++ +   ++ l++aG+k++ v Nn  ++r ++l k + + +  +a   + ++f +a  l++++ +   + v v+G
  MMETSP1137-20121227|9987_1  68 EVPSELLDNTDV--FIFDCDGVI--WKGDSVIDGVPAVLDMLRKAGKKVFFVTNNSTKSRKGYLGKFTSLGLNVEAEEIFSSSFAAAayLEQTKFKetGKXVYVIG 169
                 566666666665..688999866..555678999999999*************************98888888888888888777662234444432267777777 PP

  == domain 2    score: 25.4 bits;  conditional E-value: 9.5e-09
   TIGR01668  91 KkpgkafrralkemgltseqvvvvGDrlfTDvllgnrnGsltilveplvhpdea 144
                 K+++  +   +++ g++ + + +vGDrl TD+l g+ nG+ + l+ ++v  +e 
  MMETSP1137-20121227|9987_1 280 KPSPLMIDYMVEKYGIERDRICMVGDRLDTDILFGQNNGLKSCLTLSGVTTQEK 333
                 7888888899999****************************9999999888775 PP

>> TIGR02253  CTE7: HAD hydrolase, TIGR02253 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.0     0.053        10      98     124 ..      97     123 ..      85     151 .. 0.83
   2 !   30.6   0.0   2.9e-10   5.7e-08     147     218 ..     277     351 ..     270     353 .. 0.86

  Alignments for each domain:
  == domain 1    score: 3.6 bits;  conditional E-value: 0.053
   TIGR02253  98 dvvkvLleLresGyrlgliTdgltekq 124
                 +v  vL  Lr++G ++  +T+  t+  
  MMETSP1137-20121227|9987_1  97 GVPAVLDMLRKAGKKVFFVTNNSTKSR 123
                 5678999**************877654 PP

  == domain 2    score: 30.6 bits;  conditional E-value: 2.9e-10
   TIGR02253 147 gveKPhpkiFkaalkrlgvkpeeavmvGDrlekDikGaknlglktvwinrgkskkee...ddvvekpdfeisslr 218
                  v KP p +  + +++ g++ +   mvGDrl++Di  ++n glk+ ++  g   +e+    ++  kpd+ ++s+ 
  MMETSP1137-20121227|9987_1 277 LVGKPSPLMIDYMVEKYGIERDRICMVGDRLDTDILFGQNNGLKSCLTLSGVTTQEKlfsPENKIKPDYYVDSIA 351
                 578******************************************877777766665688566667*****9986 PP

>> TIGR02254  YjjG/YfnB: HAD hydrolase, TIGR02254 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0       3.1   6.1e+02      97     121 ..      93     118 ..      79     136 .. 0.68
   2 !   25.9   0.0   6.4e-09   1.2e-06     145     213 ..     273     341 ..     240     352 .. 0.80

  Alignments for each domain:
  == domain 1    score: -2.5 bits;  conditional E-value: 3.1
   TIGR02254  97 rllpgAlelleaLkkk.lrlyivtnG 121
                  +++g   +l+ L+k   ++  vtn 
  MMETSP1137-20121227|9987_1  93 SVIDGVPAVLDMLRKAgKKVFFVTNN 118
                 45666666677776666666677765 PP

  == domain 2    score: 25.9 bits;  conditional E-value: 6.4e-09
   TIGR02254 145 sEdaGiekPdkkiFafaleriklkkeevlmvGDsleaDikGaanaGldtvwlnpdrkpkpddiapayei 213
                  E + + kP + + ++ +e+  +++++  mvGD l++Di  ++n Gl++++  +   ++ + + p  +i
  MMETSP1137-20121227|9987_1 273 REPTLVGKPSPLMIDYMVEKYGIERDRICMVGDRLDTDILFGQNNGLKSCLTLSGVTTQEKLFSPENKI 341
                 5777799*******************************************9877666555445555544 PP

>> TIGR01456  CECR5: HAD hydrolase, TIGR01456 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0   4.5e-06   0.00087       3      72 ..      80     144 ..      79     169 .. 0.79
   2 !    6.7   0.0    0.0032      0.63     265     299 ..     299     333 ..     271     353 .. 0.80

  Alignments for each domain:
  == domain 1    score: 16.1 bits;  conditional E-value: 4.5e-06
   TIGR01456   3 falDiDGvllrGkkpiagaskalrrLvddsgalkiPvllltngGglserkraeelsalLgvevsplqviq 72 
                 f++D DGv+ +G ++i g +  l  L +  g+    v+++tn    s++    +++  Lg +v+++ +  
  MMETSP1137-20121227|9987_1  80 FIFDCDGVIWKGDSVIDGVPAVLDMLRKA-GK---KVFFVTNNSTKSRKGYLGKFT-SLGLNVEAEEIFS 144
                 89*********************999988.54...4799**987655554444433.4677777777665 PP

  == domain 2    score: 6.7 bits;  conditional E-value: 0.0032
   TIGR01456 265 klymvGDnPksDiiGarqaglfsilvktgvydgkd 299
                 ++ mvGD   +Di   ++ gl s+l+  gv  ++ 
  MMETSP1137-20121227|9987_1 299 RICMVGDRLDTDILFGQNNGLKSCLTLSGVTTQEK 333
                 578***********************999976654 PP

>> TIGR01656  Histidinol-ppas: histidinol-phosphate phosphatase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0         2   3.9e+02       4      13 ..      81      90 ..      78     127 .. 0.61
   2 !   22.1   0.0   1.3e-07   2.5e-05      98     143 ..     276     322 ..     239     331 .. 0.81

  Alignments for each domain:
  == domain 1    score: -1.3 bits;  conditional E-value: 2
   TIGR01656  4 llDrDGvlne 13
                ++D DGv+ +
  MMETSP1137-20121227|9987_1 81 IFDCDGVIWK 90
                5666666643 PP

  == domain 2    score: 22.1 bits;  conditional E-value: 1.3e-07
   TIGR01656  98 cdcrKPkpglilealkrlgvdasrslvvGDr.ldDvqaarkaGaaay 143
                   + KP+p +i+ +++++g++ +r ++vGDr ++D+  +++ G++  
  MMETSP1137-20121227|9987_1 276 TLVGKPSPLMIDYMVEKYGIERDRICMVGDRlDTDILFGQNNGLKSC 322
                 4567***************************778*********9973 PP

>> TIGR01549  HAD-SF-IA-v1: HAD hydrolase, family IA, variant 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.1      0.77   1.5e+02       2      12 ..      80      90 ..      79     103 .. 0.78
   2 ?    4.4   0.0     0.051        10      71      97 ..     104     130 ..      91     141 .. 0.82
   3 !   15.9   0.0   1.4e-05    0.0028     112     147 ..     279     316 ..     272     318 .. 0.87

  Alignments for each domain:
  == domain 1    score: 0.6 bits;  conditional E-value: 0.77
   TIGR01549  2 ilfDidGTLvd 12
                ++fD+dG+++ 
  MMETSP1137-20121227|9987_1 80 FIFDCDGVIWK 90
                79******986 PP

  == domain 2    score: 4.4 bits;  conditional E-value: 0.051
   TIGR01549  71 lkelagyrlgiiSngslraqklllrkl 97 
                 + + ag+++++++n+s+++ k  l k+
  MMETSP1137-20121227|9987_1 104 MLRKAGKKVFFVTNNSTKSRKGYLGKF 130
                 34569*************999877765 PP

  == domain 3    score: 15.9 bits;  conditional E-value: 1.4e-05
   TIGR01549 112 sKpepeiflaaleslgle.pevlhvGDn.lsDieaakn 147
                 +Kp+p ++++++e++g+e +++++vGD+  +Di  ++n
  MMETSP1137-20121227|9987_1 279 GKPSPLMIDYMVEKYGIErDRICMVGDRlDTDILFGQN 316
                 7***************97468************98887 PP

>> TIGR02252  DREG-2: HAD hydrolase, REG-2-like, family IA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.0   0.0      0.68   1.3e+02     106     133 ..      94     121 ..      89     151 .. 0.83
   2 !   15.2   0.0   1.5e-05    0.0029     158     203 .]     278     323 ..     269     323 .. 0.94

  Alignments for each domain:
  == domain 1    score: -0.0 bits;  conditional E-value: 0.68
   TIGR02252 106 vvedlekllkklreeglklgvvSNfDsr 133
                 v++++  +l+ lr++g+k+  v N  ++
  MMETSP1137-20121227|9987_1  94 VIDGVPAVLDMLRKAGKKVFFVTNNSTK 121
                 778999999********99999997655 PP

  == domain 2    score: 15.2 bits;  conditional E-value: 1.5e-05
   TIGR02252 158 aeKPdpkIFekaleklgikpeevlhiGDslekDvegakaaGlrall 203
                 + KP+p   ++ +ek+gi+ + ++ +GD l++D+   ++ Gl+++l
  MMETSP1137-20121227|9987_1 278 VGKPSPLMIDYMVEKYGIERDRICMVGDRLDTDILFGQNNGLKSCL 323
                 57****************************************9976 PP

>> TIGR01454  AHBA_synth_RP: AHBA synthesis associated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.0       8.7   1.7e+03     169     201 ..      43      75 ..      40      78 .. 0.75
   2 ?    3.0   0.0     0.077        15      75     109 ..      93     127 ..      80     150 .. 0.77
   3 !   10.6   0.0   0.00036     0.071     130     186 ..     279     336 ..     270     353 .. 0.84

  Alignments for each domain:
  == domain 1    score: -3.7 bits;  conditional E-value: 8.7
   TIGR01454 169 vaavaalwgetdeaellaarpdvvlrkpadlla 201
                 +aa+ a+ + ++++ l+ ++    l+ p++ll+
  MMETSP1137-20121227|9987_1  43 TAALHAIRAGASAVSLKEEGLCTKLEVPSELLD 75 
                 567777777788888888888888888888886 PP

  == domain 2    score: 3.0 bits;  conditional E-value: 0.077
   TIGR01454  75 evfegvpellaelradglgtaiatgksgprarsll 109
                  v +gvp +l  lr+ g ++  +t  s    +  l
  MMETSP1137-20121227|9987_1  93 SVIDGVPAVLDMLRKAGKKVFFVTNNSTKSRKGYL 127
                 5899*****************99999976665554 PP

  == domain 3    score: 10.6 bits;  conditional E-value: 0.00036
   TIGR01454 130 pkpapdivrealdlldvaaeaavmvgdal.idlasaraagvaavaalwgetdeaella 186
                  kp+p ++   +++ ++  +++ mvgd l +d+  ++  g  +  +l g t + +l +
  MMETSP1137-20121227|9987_1 279 GKPSPLMIDYMVEKYGIERDRICMVGDRLdTDILFGQNNGLKSCLTLSGVTTQEKLFS 336
                 59*************************8769***********9999999998888765 PP

>> TIGR01449  PGP_bact: phosphoglycolate phosphatase, bacterial
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.9   0.0    0.0046       0.9      81     112 ..      89     120 ..      74     132 .. 0.86
   2 !    7.0   0.0    0.0042      0.82     141     192 ..     280     332 ..     273     354 .. 0.83

  Alignments for each domain:
  == domain 1    score: 6.9 bits;  conditional E-value: 0.0046
   TIGR01449  81 eeltsvfpgveaaleaLrakGlrlglvtnkPe 112
                  ++ sv +gv a l+ Lr +G ++  vtn  +
  MMETSP1137-20121227|9987_1  89 WKGDSVIDGVPAVLDMLRKAGKKVFFVTNNST 120
                 5678999**********************866 PP

  == domain 2    score: 7.0 bits;  conditional E-value: 0.0042
   TIGR01449 141 kPdPePLllaaerlgvepaqmvyvGDs.evDiaaArAAGlpsvlltyGYryge 192
                 kP P  +    e+ g+e   + +vGD   +Di   +  Gl+s+l + G   +e
  MMETSP1137-20121227|9987_1 280 KPSPLMIDYMVEKYGIERDRICMVGDRlDTDILFGQNNGLKSCLTLSGVTTQE 332
                 8888888999****************8468****************9988665 PP

>> TIGR01993  Pyr-5-nucltdase: pyrimidine 5'-nucleotidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0       2.3   4.6e+02      86      86 ..      98      98 ..      78     154 .. 0.57
   2 !   14.5   0.0   2.6e-05     0.005      97     182 ..     236     323 ..     218     324 .. 0.85

  Alignments for each domain:
  == domain 1    score: -1.7 bits;  conditional E-value: 2.3
   TIGR01993 86 d 86
                 
  MMETSP1137-20121227|9987_1 98 V 98
                3 PP

  == domain 2    score: 14.5 bits;  conditional E-value: 2.6e-05
   TIGR01993  97 kqrkiiftNad.kahaeralkrLgiedcFdgiidieaanlelilKPspeayekalreagvdpekaifldD.sarNiaaakalglktvl 182
                 ++  +i tN d ++h + a +  g   +  +i  + + +++l+ KPsp +++ ++++ g++ ++ +++ D +   i  +++ glk +l
  MMETSP1137-20121227|9987_1 236 PGCEFIVTNLDaVTHLTDAQEWAGNGAMAGAIKGCTNREPTLVGKPSPLMIDYMVEKYGIERDRICMVGDrLDTDILFGQNNGLKSCL 323
                 666788888762578899999999888999999***********************************8834678*********9987 PP

>> TIGR00213  GmhB_yaeD: D,D-heptose 1,7-bisphosphate phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.1   0.0    0.0091       1.8      27      59 ..      94     126 ..      73     140 .. 0.84
   2 !    7.0   0.0    0.0046       0.9     105     172 ..     279     351 ..     267     354 .. 0.80

  Alignments for each domain:
  == domain 1    score: 6.1 bits;  conditional E-value: 0.0091
   TIGR00213  27 fidGvidalrelkklGyklvlvtnqsGiarGyf 59 
                  idGv  +l  l+k G k+ +vtn+s  +r  +
  MMETSP1137-20121227|9987_1  94 VIDGVPAVLDMLRKAGKKVFFVTNNSTKSRKGY 126
                 699***********************9988444 PP

  == domain 2    score: 7.0 bits;  conditional E-value: 0.0046
   TIGR00213 105 rkpkpglllqaakelkidleqsfmvGdkle.dlkaglaakvktnvlv....rtgklvtpeaeniadkvlkslv 172
                  kp p ++   ++++ i+ ++  mvGd+l+ d++ g +  +k+ + +     ++kl +pe +   d+ ++s++
  MMETSP1137-20121227|9987_1 279 GKPSPLMIDYMVEKYGIERDRICMVGDRLDtDILFGQNNGLKSCLTLsgvtTQEKLFSPENKIKPDYYVDSIA 351
                 6999************************855999888888887765422226788999999888888888886 PP

>> TIGR01428  HAD_type_II: haloacid dehalogenase, type II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.0      0.11        22      96     139 ..      98     144 ..      93     152 .. 0.78
   2 !   10.5   0.0   0.00049     0.096     145     188 ..     278     322 ..     246     324 .. 0.78

  Alignments for each domain:
  == domain 1    score: 2.8 bits;  conditional E-value: 0.11
   TIGR01428  96 vaagLkkLkerglklviLsNgstatlkslvkk...agldlefdalls 139
                 v+a+L+ L+++g k+   +N st++ k  + k   +gl++e ++++s
  MMETSP1137-20121227|9987_1  98 VPAVLDMLRKAGKKVFFVTNNSTKSRKGYLGKftsLGLNVEAEEIFS 144
                 799********************998877654111556666666665 PP

  == domain 2    score: 10.5 bits;  conditional E-value: 0.00049
   TIGR01428 145 aYKPapkvYelalealgvkpeevllvasna.wDlkgAkklGlktv 188
                 + KP+p + ++++e++g++++++++v      D+   ++ Glk++
  MMETSP1137-20121227|9987_1 278 VGKPSPLMIDYMVEKYGIERDRICMVGDRLdTDILFGQNNGLKSC 322
                 56************************8877666666777777766 PP

>> TIGR02244  HAD-IG-Ncltidse: HAD superfamily (subfamily IG) hydrolase, 5'-nucleotidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.6   0.0   5.9e-05     0.012     189     210 ..      98     119 ..      88     131 .. 0.90

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 5.9e-05
   TIGR02244 189 lvklLeklkesGkklfLlTnsd 210
                 ++++L +l+++Gkk+f +Tn++
  MMETSP1137-20121227|9987_1  98 VPAVLDMLRKAGKKVFFVTNNS 119
                 7899****************87 PP

>> TIGR01509  HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.2      0.12        23       1      13 [.      79      91 ..      79      97 .. 0.84
   2 ?    0.9   0.0      0.52     1e+02      68     102 ..      99     132 ..      89     140 .. 0.78
   3 ?    4.9   0.0      0.03       5.9     108     136 ..     277     305 ..     184     323 .. 0.70

  Alignments for each domain:
  == domain 1    score: 3.0 bits;  conditional E-value: 0.12
   TIGR01509  1 ailFDlDgvLvdt 13
                +++FD+Dgv+ ++
  MMETSP1137-20121227|9987_1 79 VFIFDCDGVIWKG 91
                58*******9765 PP

  == domain 2    score: 0.9 bits;  conditional E-value: 0.52
   TIGR01509  68 pgleellealrarglallTnspravrlgledkfdk 102
                 p + ++l+++ ++ +  +Tn++ + r g   kf  
  MMETSP1137-20121227|9987_1  99 PAVLDMLRKAGKK-VFFVTNNSTKSRKGYLGKFTS 132
                 5566677777776.899999999999998888865 PP

  == domain 3    score: 4.9 bits;  conditional E-value: 0.03
   TIGR01509 108 gsgKPdpdiylqalkklglkpeeclfvdD 136
                  +gKP p +  ++++k+g++ +++  v D
  MMETSP1137-20121227|9987_1 277 LVGKPSPLMIDYMVEKYGIERDRICMVGD 305
                 689****************9888877766 PP

>> TIGR01261  hisB_Nterm: histidinol-phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       4.6     9e+02      36      55 ..     100     119 ..      94     126 .. 0.76
   2 ?   10.8   0.0   0.00029     0.057      98     143 ..     275     321 ..     266     332 .. 0.86

  Alignments for each domain:
  == domain 1    score: -2.9 bits;  conditional E-value: 4.6
   TIGR01261  36 pallklkeagyklvlvtnqd 55 
                 + l  l++ag k+ +vtn+ 
  MMETSP1137-20121227|9987_1 100 AVLDMLRKAGKKVFFVTNNS 119
                 45667899999999999975 PP

  == domain 2    score: 10.8 bits;  conditional E-value: 0.00029
   TIGR01261  98 ncacrkPkiklleeylkkekidkersyviGdr.etdlqlaenlgirg 143
                  + + kP   +++  ++k  i+++r  ++Gdr +td+ + +n g+++
  MMETSP1137-20121227|9987_1 275 PTLVGKPSPLMIDYMVEKYGIERDRICMVGDRlDTDILFGQNNGLKS 321
                 5567799999999999999*************88*******998875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (356 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       136  (0.0331546); expected 82.0 (0.02)
Passed bias filter:                      130  (0.0316919); expected 82.0 (0.02)
Passed Vit filter:                        36  (0.00877621); expected 4.1 (0.001)
Passed Fwd filter:                        21  (0.00511945); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              21  [number of targets reported over threshold]
# CPU time: 0.32u 0.26s 00:00:00.58 Elapsed: 00:00:00.50
# Mc/sec: 939.76
//
Query:       MMETSP1137-20121227|9988_1  [L=300]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (300 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        65  (0.0158459); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.20s 00:00:00.39 Elapsed: 00:00:00.42
# Mc/sec: 942.78
//
Query:       MMETSP1137-20121227|9989_1  [L=171]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (171 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       145  (0.0353486); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.31
# Mc/sec: 728.07
//
Query:       MMETSP1137-20121227|9990_1  [L=240]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (240 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       124  (0.0302292); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.13s 00:00:00.35 Elapsed: 00:00:00.43
# Mc/sec: 736.68
//
Query:       MMETSP1137-20121227|9991_1  [L=458]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.7e-60  200.6   0.0    1.4e-59  199.9   0.0    1.3  1  TIGR00109 hemH: ferrochelatase


Domain annotation for each model (and alignments):
>> TIGR00109  hemH: ferrochelatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  199.9   0.0   3.5e-63   1.4e-59       4     320 ..      51     372 ..      49     374 .. 0.84

  Alignments for each domain:
  == domain 1    score: 199.9 bits;  conditional E-value: 3.5e-63
   TIGR00109   4 kkvgvlllnlGtPdkleeverylkqllaDpevvdisra...klrkllaklilklrskkikknYeeig.......ggSPllqiteqqaealeklld.eeidakvyialryaePfleeavkellkdeveklvvlslyPqfSssttgssfkelaealkkleslrlkisviesyydeekyikaladsikeklkkrpepdkavllfSaHglPkkvvde.GDaYpeeveatvkliaeklg....akneyaltyQSrvgpe..eWLepyteelleklgekkvdklvvvpigFvadhlEtleeidleyrvvaeeagakkykripalNakpefiealaelvlek 320
                  ++gvlll +G+P+k+e+ve+yl++++ Dpe+++++++   ++++++a++i+k ++   ++  ++           S  ++  e+qa+ale+ l   +idak  ia+ry++Pf++eav+++++ +++klv+l+lyPqfS+st+gs  + l++a    +    + +v++         +++adsi++ l ++ e   a++lfSa glP+k+vd  GD+Y e++e+tv li+ ++      +n+  l+yQ ++gp+  +W ep+  + +  lg ++v +lv+vp++Fv +h+ t+ e+d +        +a+      +  ++pefi+ala++v e 
  MMETSP1137-20121227|9991_1  51 GRIGVLLLSVGSPSKPEDVEEYLYNVFCDPEILTLPKPlnwLFKRPIAWYISKTKAADARAAMAQASgdatggpYRSAQTTTIEHQAKALEENLVaRGIDAKLFIAMRYWHPFAHEAVEQMKAANIQKLVILPLYPQFSISTSGSALRVLERARFPAKEH-GSTRVVQPARVLAASARIIADSIAS-LPET-ERGTAHVLFSAQGLPRKYVDDlGDPYLEQIERTVDLIVAEMAsrhgLTNPHSLSYQGQFGPDrvPWTEPSSTDEIIRLGTDGVRALVLVPVSFVFEHMGTVTEMDRGFA----AVAAS------CVSTDPEFIDALATVVEEA 372
                 589********************************98622145789*******99987776665554255212223445556689999999999999*****************************************************9985444433.4578888877777777888888864.5554.33559*************9988***************99998888889************86448****9877777899999************************944....44444......7788999999999999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (458 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       106  (0.0258411); expected 82.0 (0.02)
Passed bias filter:                       99  (0.0241346); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.32u 0.13s 00:00:00.45 Elapsed: 00:00:00.55
# Mc/sec: 1099.11
//
Query:       MMETSP1137-20121227|9992_1  [L=557]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.9e-12   45.3   7.1    1.9e-12   45.3   4.9    3.4  4  TIGR00880 2_A_01_02: multidrug resistance protein
    1.1e-06   25.6  16.5    7.4e-05   19.7   2.3    2.3  2  TIGR00890 2A0111: oxalate/formate antiporter
    1.1e-05   22.8  25.5    3.2e-05   21.3  14.6    2.8  2  TIGR00900 2A0121: H+ Antiporter protein
    3.6e-05   20.8   2.5    3.6e-05   20.8   1.7    2.2  2  TIGR00881 2A0104: phosphoglycerate transporter family protein
     0.0003   17.8   2.6     0.0003   17.8   1.8    2.9  2  TIGR00896 CynX: cyanate transporter
     0.0035   14.1  17.3      0.012   12.4   2.9    2.9  2  TIGR00893 2A0114: D-galactonate transporter
  ------ inclusion threshold ------
       0.62    6.7   8.1       0.15    8.7   1.5    2.4  2  TIGR00882 2A0105: oligosaccharide:H+ symporter


Domain annotation for each model (and alignments):
>> TIGR00880  2_A_01_02: multidrug resistance protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0       1.1   6.7e+02      24      61 ..      20      57 ..      18      69 .. 0.58
   2 !   45.3   4.9   3.3e-15   1.9e-12       9     130 ..      70     198 ..      62     210 .. 0.89
   3 ?   -2.3   0.0       1.7   9.7e+02     112     138 ..     228     254 ..     201     256 .. 0.65
   4 ?    4.0   7.7     0.018        10      48     128 ..     326     421 ..     279     433 .. 0.58

  Alignments for each domain:
  == domain 1    score: -1.8 bits;  conditional E-value: 1.1
   TIGR00880 24 rvGrkpvllvglfifvlsqllfalssnitvliiarilq 61
                r G+ +v ++ l+  ++    + ++  + +l+++r ++
  MMETSP1137-20121227|9992_1 20 RGGKLSVFCCCLACALADLSYALFAPFFPSLAVSRGVS 57
                56666666666665555555555667777777777443 PP

  == domain 2    score: 45.3 bits;  conditional E-value: 3.3e-15
   TIGR00880   9 lgqlvvsplsglltdrvGrkpvllvglfifvlsqllfals.......snitvliiarilqGfgaaaalvagaaliadiikeeersvalgllsagialgpilGpllGavlaqalgwralflilallalla 130
                 l+ l++ pl+  l++  G   vllvg++i+++s l+fa+        +     +++r +qG ++a++ +a+++l+ ++++e++++ a+g   a+  lg + Gp+lG++l+q  g++a+fl+++  +ll 
  MMETSP1137-20121227|9992_1  70 LVMLMLTPLAPRLIQYAGCNRVLLVGMLIQSISVLAFAFIerleeplHFTIAALLLRSVQGGASAFFETAAGSLVMRAVPENMVGDAIGWTEAARGLGSLGGPPLGGLLFQTAGFEAPFLAAGGAMLLM 198
                 6778899********************************99998887666667789****************************************************************997666553 PP

  == domain 3    score: -2.3 bits;  conditional E-value: 1.7
   TIGR00880 112 qalgwralflilallallafilllfll 138
                 +a++  +  l +  +a+ afi+++fl+
  MMETSP1137-20121227|9992_1 228 KASSSPWRMLQMPPIAAGAFICTCFLI 254
                 444555555666677888888888876 PP

  == domain 4    score: 4.0 bits;  conditional E-value: 0.018
   TIGR00880  48 s.........snitvliiarilqGfgaaaalv.agaaliadiikee....ersvalgllsag.ialgpilGpllGavlaqalgwralflilallal 128
                           +++ + + a +++G+ga+   v +++ ++a + +++    e s al+ ++ + + +g+  Gp +G+vl+q+ g+ +   il++ +l
  MMETSP1137-20121227|9992_1 326 IpllphgerfQSVPQVAAAMTVIGLGAGLGYVpMTNLMLAAARSTGrrvdEISDALSAIVNFsFCVGAAAGPWIGGVLVQFAGFDWASSILGMCML 421
                 2444455555555566666667777777654414444444333333111355666655544415678889999999999****9999999887765 PP

>> TIGR00890  2A0111: oxalate/formate antiporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.6   3.7   3.5e-05      0.02     262     373 ..      81     197 ..      26     203 .. 0.78
   2 !   19.7   2.3   1.3e-07   7.4e-05       6     172 ..     244     426 ..     240     454 .. 0.73

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 3.5e-05
   TIGR00890 262 avsDkigrlktmsivlsisavlllslllikkisdvlflAl.valvaftiGgtfslfp....slvskifgkknsaanyGllytakavagilggliaslvlteiGfeatllvtaalall 373
                  +  + g  +++ +++ i  +++l++++i+ + + l++ +  +l  +  Gg  + f     slv +   ++ ++   G + +a +++++ g  +++l++   Gfea +l ++  +ll
  MMETSP1137-20121227|9992_1  81 RLIQYAGCNRVLLVGMLIQSISVLAFAFIERLEEPLHFTIaALLLRSVQGGASAFFEtaagSLVMRAVPENMVGDAIGWTEAARGLGSLGGPPLGGLLFQTAGFEAPFLAAGGAMLL 197
                 5556788899999********************66655440445667778888888633336778888899999999********************************99877764 PP

  == domain 2    score: 19.7 bits;  conditional E-value: 1.3e-07
   TIGR00890   6 lvgtvimalvsgivYtwtllapalgrklrvkvtavaiaftlllivlalsqvvgGkladkfGpravallggillgiGfifaa.........ladslallyltyglasvgegivYgialst...av....kWfpdkrGLasgiiiggyGlGslilsplitsvielegveaafivmgivalllivl 172
                 + +++ +++ + i +    l+p +++ ++++ ++v + f++l++   l + v+G+ a + G+ +   lg +l+g+G+i  +           +s++ + +++++ ++g g  Y  + ++   a     +   +     s+i+  ++ +G+++   +   +++  g+  a  ++g+ +l l  +
  MMETSP1137-20121227|9992_1 244 AGAFICTCFLIAISFLDPSLQPEMKARFGMGPAQVGLLFGTLILAYILLSLVAGATASRLGSLLQLNLGIALTGLGYIALGpipllphgeRFQSVPQVAAAMTVIGLGAGLGYVPMTNLmlaAArstgRRVDEISDALSAIVNFSFCVGAAAGPWIGGVLVQFAGFDWASSILGMCMLSLPAF 426
                 578999***********************************************************************8776222222111346899999999999999999996433221112211113444444555666666666666666666666666666666666666666655555 PP

>> TIGR00900  2A0121: H+ Antiporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3  14.6   5.5e-08   3.2e-05      37     332 ..      62     370 ..      31     394 .. 0.77
   2 ?    2.6   0.2     0.026        15     131     159 ..     384     412 ..     373     423 .. 0.78

  Alignments for each domain:
  == domain 1    score: 21.3 bits;  conditional E-value: 5.5e-08
   TIGR00900  37 slaalagllplvvvspiaGvlvDRldrkkvmvgaDliravlvavlpfvallgleiwmvlvvalilsi...aqafftpatsailPdlvpeeeltranslsqlvrslieivgPgiggllvatlgikaailvdavgflisallivsvripkkaaseeeelse.avlrdileGlkfvlknklLrtllllallfnlvfapiisvllpyvtskv...lrrssvevgvvlaafglGallGalllgllgkylkraalitiavlvig...lailvlgllnp.n....lllllvlaaaiGvvvglinviigtllqrsvpae 332
                 + + +  +l++++++p a  l+ ++   +v+    li+ ++v+++ f+  l+ ++   ++++l++s+   a+aff +a  +++ ++vpe+    a++  +++r l ++ gP +ggll +t g++a +l+   + l+  ++ +++ + k     +  l++ +  +   +  +  ++   +  +++ a++ +    +i   l p  + ++   ++ ++ +vg++   + l+ +l +l+ g ++ +l  ++ +++++ + g   +a+++++ll+       ++ +++++ +iG++ gl  v+++ l+  ++ + 
  MMETSP1137-20121227|9992_1  62 GAVFAQPMLVMLMLTPLAPRLIQYAGCNRVLLVGMLIQSISVLAFAFIERLEEPLHFTIAALLLRSVqggASAFFETAAGSLVMRAVPENMVGDAIGWTEAARGLGSLGGPPLGGLLFQTAGFEAPFLAAGGAMLLMNGVQLVIALSKTST-SAALLPPaDASATASKASSSPWRMLQMPPIAAGAFICTCFLIAIS-FLDPSLQPEMkarFGMGPAQVGLLFGTLILAYILLSLVAGATASRLGSLLQLNLGIALTGlgyIALGPIPLLPHgErfqsVPQVAAAMTVIGLGAGLGYVPMTNLMLAAARST 370
                 4445567999***************99888888889999999999999988767777777777776644489*****************************************************99888777777666666666666665.333344344444444444444444444444455555444333333.5666665554445************************************99999988876333689999999987687888999*******************9998776654 PP

  == domain 2    score: 2.6 bits;  conditional E-value: 0.026
   TIGR00900 131 lsqlvrslieivgPgiggllvatlgikaa 159
                 +++  + +    gP igg+lv++ g+ +a
  MMETSP1137-20121227|9992_1 384 IVNFSFCVGAAAGPWIGGVLVQFAGFDWA 412
                 4555666777889************9998 PP

>> TIGR00881  2A0104: phosphoglycerate transporter family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   2.5     0.027        16      62     184 ..      91     221 ..      43     238 .. 0.78
   2 !   20.8   1.7   6.2e-08   3.6e-05      17     146 ..     263     407 ..     248     515 .. 0.82

  Alignments for each domain:
  == domain 1    score: 2.2 bits;  conditional E-value: 0.027
   TIGR00881  62 flaigLilvaivnlflgfss......slwvli.allalnGlfqglgwppcgrlltkwfsrserGtvvaiwnishnvggallpplvllaialllswhvvfivpgiiaiivslilllllrdspqs.vglpkle 184
                 +l++g++  +i  l ++f +      ++++ + +l+ ++G + ++    +g+l+ + ++++  G +++    +  +g    ppl  l ++    +   ++  g++ ++ ++ l++ l+++  s   lp+++
  MMETSP1137-20121227|9992_1  91 VLLVGMLIQSISVLAFAFIErleeplHFTIAAlLLRSVQGGASAFFETAAGSLVMRAVPENMVGDAIGWTEAARGLGSLGGPPLGGLLFQTAGFEAPFLAAGGAMLLMNGVQLVIALSKTSTSaALLPPAD 221
                 5677888899*********98887664444331345667777777788999*******************************9999999888877777777776666666655555555444404445555 PP

  == domain 2    score: 20.8 bits;  conditional E-value: 6.2e-08
   TIGR00881  17 alpelqeeiglsktdlGlllsafsiaYgiskfvvgvvsDrvsarvflaigLilvaivnlflgfss.........slwvliallalnGlfqglgwppcgrlltkwfsrser......Gtvvaiwnishnvggallpplvllaiall 146
                 ++pe+++ +g+  +++Gll+    +aY +  +v g  + r ++   l +g+ l+++  + lg  +         s+++ +a++ + Gl  glg +p + l+ +    + r        + ai n s  vg a  p +  + +++ 
  MMETSP1137-20121227|9992_1 263 LQPEMKARFGMGPAQVGLLFGTLILAYILLSLVAGATASRLGSLLQLNLGIALTGLGYIALGPIPllphgerfqSVPQVAAAMTVIGLGAGLGYVPMTNLMLAAARSTGRrvdeisDALSAIVNFSFCVGAAAGPWIGGVLVQFA 407
                 689*************************************************************9****************************9998887766544433312222224567888888888888886655555544 PP

>> TIGR00896  CynX: cyanate transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   1.8     5e-07    0.0003      20      81 ..      44     105 ..      31     183 .. 0.85
   2 ?    1.3   8.2     0.054        32      25     349 ..     266     407 ..     242     445 .. 0.47

  Alignments for each domain:
  == domain 1    score: 17.8 bits;  conditional E-value: 5e-07
   TIGR00896  20 gplleevrsalglsasaaglLtalPvlalavlallapklarrlgeersvlagllliaaGili 81 
                 +p ++++  + g+s +a g + a P+l + +l++lap+l +  g +r++l+g+l+  + +l 
  MMETSP1137-20121227|9992_1  44 APFFPSLAVSRGVSHAAVGAVFAQPMLVMLMLTPLAPRLIQYAGCNRVLLVGMLIQSISVLA 105
                 7889999999999****************************************998887764 PP

  == domain 2    score: 1.3 bits;  conditional E-value: 0.054
   TIGR00896  25 evrsalglsasaaglLtalPvlalavlallapklarrlgeersvlagllliaaGiliRsaggtalllagtalagvgiaiinvllPslikrkfpervglltglyslalalgaalaaavtvpLaqalegrWqqalalwallallAlllWlpqvrrrkaanqtakrltpkrilrsklAWqvtvflGlqsllyyivigWlpailiesGvsaataGlllallqlaqlasalliPllasrvkdqrkivvvvavltl....vGlv.....GllfapvdallaWalvlGlgqG.gafsLa.Ltliglrsrs...aaqaakLsamaqsiGyllaalgPllvGvlydas 349
                 e+++ +                                                                                                                                                                                                     G+  a+ Gll++ l+la ++ +l++ + asr+    ++ + +a+  l     G +     G  f  v  + a + v+Glg G g ++++ L+l+  rs+     ++  +Lsa+      + aa gP++ Gvl + +
  MMETSP1137-20121227|9992_1 266 EMKARF-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GMGPAQVGLLFGTLILAYILLSLVAGATASRLGSLLQLNLGIALTGLgyiaLGPIpllphGERFQSVPQVAAAMTVIGLGAGlGYVPMTnLMLAAARSTGrrvDEISDALSAIVNFSFCVGAAAGPWIGGVLVQFA 407
                 444444.....................................................................................................................................................................................................5555555555555555555555555555555533222222111111100001111111112233344444445555555555223333314444444432011223344444443222233555555555555543 PP

>> TIGR00893  2A0114: D-galactonate transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.4   2.9   2.1e-05     0.012      25     179 ..      55     217 ..      43     232 .. 0.85
   2 !    6.2   3.6    0.0015      0.91      17      77 ..     264     324 ..     252     423 .. 0.70

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 2.1e-05
   TIGR00893  25 glsaaqyglvfsafsigyvlfqlpggllldriGakktlavaivlWglftllqafat.......alvslivlRvllGlaEaplfPgiikivasWFPakeratavsifnsaqalgaiiggplvgwilvefsWqlvFiieGvlaiil.gvlilkvikdkpekakvl 179
                 g+s a++g vf+  ++ ++++  ++  l++  G   +l v +++ ++  l+ af+         +++ ++lR + G a a +  +   +v    P++  + a++ + +a +lg++ g+pl g++ ++ ++++ F+  G   +++ gv +++ + +   +a++l
  MMETSP1137-20121227|9992_1  55 GVSHAAVGAVFAQPMLVMLMLTPLAPRLIQYAGCNRVLLVGMLIQSISVLAFAFIErleeplhFTIAALLLRSVQGGASAFFETAAGSLVMRAVPENMVGDAIGWTEAARGLGSLGGPPLGGLLFQTAGFEAPFLAAGGAMLLMnGVQLVIALSKTSTSAALL 217
                 78999999999999999**************************************999977665555667888899999999999999999999*****************************************9999888873555555555555555555 PP

  == domain 2    score: 6.2 bits;  conditional E-value: 0.0015
   TIGR00893  17 avtlkedLglsaaqyglvfsafsigyvlfqlpggllldriGakktlavaivlWglftllqa 77 
                 ++++k  +g+  aq+gl f    ++y+l+ l++g+   r+G+ + l + i l gl  ++ +
  MMETSP1137-20121227|9992_1 264 QPEMKARFGMGPAQVGLLFGTLILAYILLSLVAGATASRLGSLLQLNLGIALTGLGYIALG 324
                 7899999**********************************98888877777777666666 PP

>> TIGR00882  2A0105: oligosaccharide:H+ symporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   1.5   0.00026      0.15     222     306 ..      26     111 ..      13     208 .. 0.83
   2 ?   -0.5   0.3      0.16        94      29      68 ..     267     306 ..     243     431 .. 0.72

  Alignments for each domain:
  == domain 1    score: 8.7 bits;  conditional E-value: 0.00026
   TIGR00882 222 lyvvGvasvy.dvfdqqfavffkslfetpeeGtrvfGyvttagellnalimfiapliinriGaknalliagvimavrilgssfatt 306
                 ++    a+   d+    fa ff sl  +  +   + G v +   l+  ++  +ap +i   G    ll++ +i ++ +l+ +f   
  MMETSP1137-20121227|9992_1  26 VFCCCLACALaDLSYALFAPFFPSLAVSRGVSHAAVGAVFAQPMLVMLMLTPLAPRLIQYAGCNRVLLVGMLIQSISVLAFAFIER 111
                 55556666431555556999999999999999999999999999999999999***********************9999988754 PP

  == domain 2    score: -0.5 bits;  conditional E-value: 0.16
   TIGR00882  29 lkdvlglsktetGivfsvislfsilfqplfGlisdklGlk 68 
                 +k   g+  +++G++f ++ l+ il+  + G    +lG  
  MMETSP1137-20121227|9992_1 267 MKARFGMGPAQVGLLFGTLILAYILLSLVAGATASRLGSL 306
                 5556677778888888888888888888888888888843 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (557 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       139  (0.0338859); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.52u 0.18s 00:00:00.70 Elapsed: 00:00:00.76
# Mc/sec: 967.34
//
Query:       MMETSP1137-20121227|9993_1  [L=288]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0003   18.8   0.8    0.00072   17.5   0.5    1.6  1  TIGR00293 TIGR00293: prefoldin, alpha subunit
    0.00089   17.1   8.4     0.0012   16.8   5.8    1.1  1  TIGR03499 FlhF: flagellar biosynthesis protein FlhF
  ------ inclusion threshold ------
      0.025   10.1   8.5       0.03    9.8   5.9    1.2  1  TIGR02169 SMC_prok_A: chromosome segregation protein SMC
      0.041   10.0   6.7      0.053    9.6   4.6    1.0  1  TIGR00600 rad2: DNA excision repair protein (rad2)
      0.048    9.2  12.9      0.059    8.9   8.9    1.0  1  TIGR02168 SMC_prok_B: chromosome segregation protein SMC
      0.071   11.6   2.9       0.22   10.0   0.2    2.4  2  TIGR03483 FtsZ_alphas_C: cell division protein FtsZ, alphaProteobacterial C-terminal extension
      0.087   11.1  10.0      0.096   10.9   5.7    1.9  2  TIGR02473 flagell_FliJ: flagellar export protein FliJ


Domain annotation for each model (and alignments):
>> TIGR00293  TIGR00293: prefoldin, alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.5   1.2e-06   0.00072      81     127 ..     109     155 ..     107     157 .. 0.89

  Alignments for each domain:
  == domain 1    score: 17.5 bits;  conditional E-value: 1.2e-06
   TIGR00293  81 ekdleeAieilkkkieelekaieklqeelqelaseaqeieqelqqkq 127
                 e dl +  ++lk+ki+ lek++++lq e +e+ase++++++e +qk 
  MMETSP1137-20121227|9993_1 109 EDDLLSSPAFLKQKINVLEKELQTLQTETEEAASEIDAVREEWAQKR 155
                 5666666789********************************99986 PP

>> TIGR03499  FlhF: flagellar biosynthesis protein FlhF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   5.8     2e-06    0.0012      17     185 ..      50     224 ..      40     235 .. 0.69

  Alignments for each domain:
  == domain 1    score: 16.8 bits;  conditional E-value: 2e-06
   TIGR03499  17 kvkeelGpdavIlstrkvrkgglfskkkvevvaaideeesasaaseeeeakkaleeaepkklskaeekeekekeaeekaaeaaqeaekkleeae......eelrkelkalkellekqlselal...eeedperakllkkllea..gvseelarelleklkekedaeeareklreaLekkl 185
                  v+++ G+ +  + +++ + g    +k vev a ++++e  +aa ++e+++k+++++++ k++ +++ +++++  ++k +  ++e ++ + e e      +++r+e+++ +e le  ++++++   +++ + +a++ +kll++   v +++ r+ ++  +e e +e++ +k +++Le+ +
  MMETSP1137-20121227|9993_1  50 VVQHARGSQICAMADKEEAAG---DEKGVEVEAELEKDE--PAADASEAKAKEAPKKAAPKAPVEDDLLSSPAFLKQKINVLEKELQTLQTETEeaaseiDAVREEWAQKRERLELDFENFKAryfNQTVSAQAEAKAKLLSEllPVLDNFERARVAIKPEGEAQEATNAKYLSMLEGLM 224
                 677888888888999999888...9999***********..6666666666666666666677777777888888887777776666666555566788999999999999999999999988999555555555555555441135566666666666666666666666666666666 PP

>> TIGR02169  SMC_prok_A: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   5.9   5.2e-05      0.03     839     936 ..      70     167 ..      50     244 .. 0.54

  Alignments for each domain:
  == domain 1    score: 9.8 bits;  conditional E-value: 5.2e-05
   TIGR02169 839 lqeeieeleeqkkeiekeieelkakleeleeeleeleaavreLeeelkdLkkereeleaelrelekkkeeleaeiekkrkrlkelkaklealeeelse 936
                   e+  e+e+  ++ e + ++++ak +e  ++++ ++  + +L ++ + Lk++++ le+el+ l+ + ee+++ei+  r++ ++++++le   e+ ++
  MMETSP1137-20121227|9993_1  70 GDEKGVEVEAELEKDEPAADASEAKAKEAPKKAAPKAPVEDDLLSSPAFLKQKINVLEKELQTLQTETEEAASEIDAVREEWAQKRERLELDFENFKA 167
                 33444444444444444444555555555555555555555555555555555555555555555555555555555555555555555554444433 PP

>> TIGR00600  rad2: DNA excision repair protein (rad2)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   4.6   9.1e-05     0.053     654     760 ..      63     172 ..      48     184 .. 0.74

  Alignments for each domain:
  == domain 1    score: 9.6 bits;  conditional E-value: 9.1e-05
   TIGR00600 654 sekeesesddkfievdsvlseleeqseslsestdeseeaaeekvevaek..eksk.evvellldeeeeeeiee.maeeekdlddvknelqdisleelealeaflkaeqesl 760
                  +kee  +d+k  ev+++l++ e  +  +++  +e+ ++a  k  v+++  ++++  + + +  e+e ++++  ++e+  ++d v +e+ +  +  +   e+f  +  +++
  MMETSP1137-20121227|9993_1  63 ADKEEAAGDEKGVEVEAELEKDEPAADASEAKAKEAPKKAAPKAPVEDDllSSPAfLKQKINVLEKELQTLQTeTEEAASEIDAVREEWAQKRERLELDFENFKARY-FNQ 172
                 59*********************999999999888877776666555551155555666666777787777765889999**********99877777777776543.333 PP

>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   8.9    0.0001     0.059     306     455 ..      62     213 ..      52     252 .. 0.59

  Alignments for each domain:
  == domain 1    score: 8.9 bits;  conditional E-value: 0.0001
   TIGR02168 306 ilkerleqlekeleeleeqleeleskkeeleeelaeleeeleelkeelesleaeleeaeaeleelesrleeleeeleelrsevaeleeqlaslnaelerleaeleq..leerrerlkqeieelekkleeaeaelkelqeeleeleeeleele 455
                 ++++++++ +++  e+e++le++e   + +e++++e  ++ +  +   ++l ++ + ++++++ le++l++l++e ee++se+++++e+ a+ +++le   ++ ++   +++++ + + + +l ++l  +  ++++ +  ++ + e++e ++
  MMETSP1137-20121227|9993_1  62 MADKEEAAGDEKGVEVEAELEKDEPAADASEAKAKEAPKKAAPKAPVEDDLLSSPAFLKQKINVLEKELQTLQTETEEAASEIDAVREEWAQKRERLELDFENFKAryFNQTVSAQAEAKAKLLSELLPVLDNFERARVAIKPEGEAQEATN 213
                 55566666677777788888888888888888888777777777777777777777777777778888888888888888877777777777777665433333220122222222222333333333333333333333333322222222 PP

>> TIGR03483  FtsZ_alphas_C: cell division protein FtsZ, alphaProteobacterial C-terminal extension
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.2   0.00038      0.22      90     121 .]      95     124 ..      51     124 .. 0.63
   2 ?    1.6   0.1      0.15        89      48      94 ..     136     187 ..     125     220 .. 0.67

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 0.00038
   TIGR03483  90 gldeqgrpvpqaraiqedDqLeiPAFLRRqaN 121
                   +++ +++p  +a+ edD L  PAFL+ + N
  MMETSP1137-20121227|9993_1  95 AKEAPKKAAP--KAPVEDDLLSSPAFLKQKIN 124
                 2345566666..8999***********98776 PP

  == domain 2    score: 1.6 bits;  conditional E-value: 0.15
   TIGR03483  48 eeadeAalepaaraaaaqpvealpkre......ralaqdasvYaprrggldeq 94 
                 e +++A+ + a+r++ aq+ e l+  +      r ++q +s  a ++++l ++
  MMETSP1137-20121227|9993_1 136 ETEEAASEIDAVREEWAQKRERLEL-DfenfkaRYFNQTVSAQAEAKAKLLSE 187
                 3333455555555554444333221.112234588888899888888887765 PP

>> TIGR02473  flagell_FliJ: flagellar export protein FliJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   5.7   0.00016     0.096      69     133 ..     122     187 ..     114     191 .. 0.89
   2 ?   -1.7   0.0       1.3   7.4e+02      53      74 ..     207     228 ..     182     232 .. 0.69

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 0.00016
   TIGR02473  69 firqldeaieqqqqelaelekeleakrerlleaakelk.alekLkekkqkeeraeeakrEqkemDe 133
                  i+ l+++++ +q+e +e+  e++a re +++++++l+  +e+ k +++++  +++a++  k + e
  MMETSP1137-20121227|9993_1 122 KINVLEKELQTLQTETEEAASEIDAVREEWAQKRERLElDFENFKARYFNQTVSAQAEAKAKLLSE 187
                 5889********************************99459******9999999999888777655 PP

  == domain 2    score: -1.7 bits;  conditional E-value: 1.3
   TIGR02473  53 kvqsgtsaaelsnlqrfirqld 74 
                 ++q++t+a+ ls+l++ +++l+
  MMETSP1137-20121227|9993_1 207 EAQEATNAKYLSMLEGLMEKLK 228
                 4555667777777777776665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (288 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       227  (0.0553389); expected 82.0 (0.02)
Passed bias filter:                      129  (0.0314481); expected 82.0 (0.02)
Passed Vit filter:                        23  (0.00560702); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.34u 0.13s 00:00:00.47 Elapsed: 00:00:00.48
# Mc/sec: 791.93
//
Query:       MMETSP1137-20121227|9994_1  [L=385]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.2e-17   59.6   0.0      2e-16   57.7   0.0    1.7  2  TIGR01327 PGDH: phosphoglycerate dehydrogenase


Domain annotation for each model (and alignments):
>> TIGR01327  PGDH: phosphoglycerate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.1     0.028   1.2e+02      96     123 ..     155     182 ..     150     188 .. 0.84
   2 !   57.7   0.0     5e-20     2e-16     185     280 ..     246     351 ..     237     381 .. 0.86

  Alignments for each domain:
  == domain 1    score: -0.9 bits;  conditional E-value: 0.028
   TIGR01327  96 tisaaElalalllalaRkipqadksvke 123
                    +aEla+ llla+a+ +  ad ++++
  MMETSP1137-20121227|9994_1 155 APITAELAISLLLAAAKFLLPADLRLRA 182
                 55689***********999988887776 PP

  == domain 2    score: 57.7 bits;  conditional E-value: 5e-20
   TIGR01327 185 kdldellaeaDvitvHvPltketkgligkeelakmKkgviivNcaRGGiidEkALvealeegkvraaalDvfekEPpt..........dnklleldnvvvtpHlgA 280
                 ++l+ ll  aDv+   +P t et gl+g+ el  + +++++vN+ R  ++dEkAL++al+++k+ aa++Dv+ + Pp             ++++l+nvv++pH g 
  MMETSP1137-20121227|9994_1 246 AQLHSLLPAADVLIXCLPATAETVGLVGEAELSLLPRQAVLVNVGRAQVVDEKALYNALSSNKLCAAGIDVWYNYPPDydaasctqpsGYNFAALKNVVMSPHRGG 351
                 5799************************************************************************988877776655567899999******875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (385 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        93  (0.0226719); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.31u 0.17s 00:00:00.48 Elapsed: 00:00:00.38
# Mc/sec: 1337.26
//
Query:       MMETSP1137-20121227|9995_1  [L=439]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (439 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        33  (0.00804486); expected 82.0 (0.02)
Passed bias filter:                       29  (0.00706972); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.16s 00:00:00.44 Elapsed: 00:00:00.87
# Mc/sec: 666.01
//
Query:       MMETSP1137-20121227|9997_1  [L=114]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (114 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       167  (0.0407118); expected 82.0 (0.02)
Passed bias filter:                      118  (0.0287665); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.16s 00:00:00.31 Elapsed: 00:00:00.34
# Mc/sec: 442.55
//
Query:       MMETSP1137-20121227|9998_1  [L=90]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (90 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       277  (0.067528); expected 82.0 (0.02)
Passed bias filter:                      144  (0.0351048); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.14s 00:00:00.30 Elapsed: 00:00:00.30
# Mc/sec: 395.97
//
Query:       MMETSP1137-20121227|9999_1  [L=411]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.27    9.5   3.7        0.2    9.9   0.8    2.1  2  TIGR02811 formate_TAT: formate dehydrogenase region TAT target


Domain annotation for each model (and alignments):
>> TIGR02811  formate_TAT: formate dehydrogenase region TAT target
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.8   4.9e-05       0.2       9      40 ..      53      84 ..      50      91 .. 0.86
   2 ?   -2.6   0.0      0.39   1.6e+03      16      27 ..     276     287 ..     275     291 .. 0.83

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 4.9e-05
   TIGR02811  9 lsRRdLLkglavgaaagavaaatgrvasasaa 40
                +sRR+ L +++v++a +++a++ + v + +++
  MMETSP1137-20121227|9999_1 53 PSRRSALVAAGVASAFSGLAGGXTAVEATAVD 84
                79********************9998755554 PP

  == domain 2    score: -2.6 bits;  conditional E-value: 0.39
   TIGR02811  16 kglavgaaagav 27 
                 k +a g++ag++
  MMETSP1137-20121227|9999_1 276 KLIAFGTVAGGL 287
                 67899****997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (411 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       137  (0.0333983); expected 82.0 (0.02)
Passed bias filter:                      121  (0.0294978); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.32u 0.19s 00:00:00.51 Elapsed: 00:00:00.79
# Mc/sec: 686.68
//
Query:       MMETSP1137-20121227|10000_1  [L=280]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (280 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       128  (0.0312043); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.14s 00:00:00.37 Elapsed: 00:00:00.37
# Mc/sec: 998.84
//
Query:       MMETSP1137-20121227|10002_1  [L=226]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      6e-11   39.8   0.0    7.9e-11   39.4   0.0    1.1  1  TIGR02716 C20_methyl_CrtF: C-20 methyltransferase BchU
     0.0017   16.0   0.0      0.004   14.8   0.0    1.6  1  TIGR02764 spore_ybaN_pdaB: polysaccharide deacetylase family sporulation protein PdaB
     0.0032   14.6   0.0     0.0062   13.7   0.0    1.5  1  TIGR01983 UbiG: 3-demethylubiquinone-9 3-O-methyltransferase
  ------ inclusion threshold ------
      0.011   12.8   0.0      0.039   11.1   0.0    1.8  2  TIGR03533 L3_gln_methyl: protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific


Domain annotation for each model (and alignments):
>> TIGR02716  C20_methyl_CrtF: C-20 methyltransferase BchU
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.4   0.0   7.7e-14   7.9e-11     152     302 ..      39     193 ..      29     196 .. 0.86

  Alignments for each domain:
  == domain 1    score: 39.4 bits;  conditional E-value: 7.7e-14
    TIGR02716 152 klidvgggigdiaaallkafpeldvtllnlpsaldlvre.nvaekgladrirgvavdiykesypea.davlfsrilysaneqlstillkkaydalrsggrllildmviddpenpnydylshyllaigmgfsvlefkeqa..vykelleslgykdv 302
                   l+d ggg g  +  + k+ p + + + ++p  +  ++        +  r+r++ ++++ + +p++ davl+s +l+   e+ +  +l++a  al+ gg +l+ +m + d ++   +      l++ m++   e  +++  + +e+l +  ++dv
  MMETSP1137-20121227|10002_1  39 ALLDAGGGSGVYSVCMAKSAPLMRCDIGEIPEVVVAINGlGYIPPDVRTRVRPIQLNLFADDWPQGyDAVLLSSVLHDWSEEEAVAILQRACRALKPGGVVLVHEMPLADSDDCSEQAQLAAALSVHMALYTAEGAQRTveRMHEILCEASFQDV 193
                  589*****************************99988872456789******************9889******************************************999877666666777778777766555541256788888888887 PP

>> TIGR02764  spore_ybaN_pdaB: polysaccharide deacetylase family sporulation protein PdaB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   3.9e-06     0.004     119     159 ..     103     143 ..      95     167 .. 0.87

  Alignments for each domain:
  == domain 1    score: 14.8 bits;  conditional E-value: 3.9e-06
    TIGR02764 119 lgykvvqwsvdslDwknpgvekivdrvvknvksGdiiLlHa 159
                  +gy++v  s   +Dw ++   +i++r ++++k+G ++L+H 
  MMETSP1137-20121227|10002_1 103 QGYDAVLLSSVLHDWSEEEAVAILQRACRALKPGGVVLVHE 143
                  69**************************************3 PP

>> TIGR01983  UbiG: 3-demethylubiquinone-9 3-O-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   0.0     6e-06    0.0062      50     151 ..      37     141 ..       1     145 [. 0.73

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 6e-06
    TIGR01983  50 glkvlDvGcGgGllseslarlgae.vtgiDlseelievAklhakkdplkkieyelksveelaeeekesfDvvlamEvlEHvadle..eilkecaellkpggilfl 151
                   l +lD G G+G+ s  +a++       i    e++ + +      p  + + +  +++ +a++  + +D+vl + vl   ++ e  +il+++++ lkpgg++++
  MMETSP1137-20121227|10002_1  37 PLALLDAGGGSGVYSVCMAKSAPLmRCDIGEIPEVVVAINGLGYIPPDVRTRVRPIQLNLFADDWPQGYDAVLLSSVLHDWSEEEavAILQRACRALKPGGVVLV 141
                  5789***************98765244566666666555544444444368888899999999999************987665522689***********9987 PP

>> TIGR03533  L3_gln_methyl: protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   3.8e-05     0.039     122     194 ..      37     109 ..      24     114 .. 0.92
   2 ?   -2.1   0.0      0.41   4.2e+02     232     249 ..     124     141 ..     120     144 .. 0.86

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 3.8e-05
    TIGR03533 122 vkrvldlctGsGClaiaaaeafpeaevdavDisedaLevaeenieeyeledrveliqsdlfealegkkydliv 194
                  +  +ld   GsG  ++ +a+  p ++ d+ +i e  +++        +++ rv++iq +lf++   + yd ++
  MMETSP1137-20121227|10002_1  37 PLALLDAGGGSGVYSVCMAKSAPLMRCDIGEIPEVVVAINGLGYIPPDVRTRVRPIQLNLFADDWPQGYDAVL 109
                  66799*************************************999*****************99999999875 PP

  == domain 2    score: -2.1 bits;  conditional E-value: 0.41
    TIGR03533 232 rilaeaaeyLeeeGvLvv 249
                   il++a + L+++Gv++v
  MMETSP1137-20121227|10002_1 124 AILQRACRALKPGGVVLV 141
                  699***********9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (226 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       104  (0.0253535); expected 82.0 (0.02)
Passed bias filter:                       96  (0.0234032); expected 82.0 (0.02)
Passed Vit filter:                        18  (0.0043881); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.24u 0.12s 00:00:00.36 Elapsed: 00:00:00.35
# Mc/sec: 852.27
//
Query:       MMETSP1137-20121227|10003_1  [L=366]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (366 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        99  (0.0241346); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.12s 00:00:00.39 Elapsed: 00:00:00.38
# Mc/sec: 1271.26
//
Query:       MMETSP1137-20121227|10004_1  [L=157]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.7e-11   42.0   4.3    2.3e-11   41.6   3.0    1.3  1  TIGR00103 DNA_YbaB_EbfC: DNA-binding protein, YbaB/EbfC family


Domain annotation for each model (and alignments):
>> TIGR00103  DNA_YbaB_EbfC: DNA-binding protein, YbaB/EbfC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.6   3.0   5.7e-15   2.3e-11      10     103 ..      58     153 ..      31     154 .. 0.88

  Alignments for each domain:
  == domain 1    score: 41.6 bits;  conditional E-value: 5.7e-15
    TIGR00103  10 ellkqaqkvqekikklqeelkklevtgksgaglvkveinGekelksveIdpsllddedkealeeliteAlndAvkkvkekike...kvtkglplvpg 103
                  e++k+ ++v +k+++lqeel ++ev+    +g + v++ G + ++sve+ +++l   ++e l+e +++Al++A +k+    ++   ++ + ++l +g
  MMETSP1137-20121227|10004_1  58 EMMKKYSEVGQKVQELQEELTQTEVECSTNEGGIVVKVTGTQVPLSVEVSDEMLA-GGAEKLSEQVAAALKQAHAKSGGYAQQrmaELYDQMGLGAG 153
                  8************************9888888899*******************9.*******************9988777744555556666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (157 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       290  (0.0706972); expected 82.0 (0.02)
Passed bias filter:                      223  (0.0543637); expected 82.0 (0.02)
Passed Vit filter:                        21  (0.00511945); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.21u 0.14s 00:00:00.35 Elapsed: 00:00:00.48
# Mc/sec: 431.71
//
Query:       MMETSP1137-20121227|10005_1  [L=586]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.1e-13   45.9   0.0    8.4e-12   41.6   0.0    2.0  2  TIGR03903 TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
    1.3e-06   25.9   0.0    2.3e-06   25.0   0.0    1.4  1  TIGR03724 arch_bud32: Kae1-associated kinase Bud32


Domain annotation for each model (and alignments):
>> TIGR03903  TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    2.2   0.0    0.0031       6.3       2      58 ..      51     107 ..      50     120 .. 0.70
   2 !   41.6   0.0   4.1e-15   8.4e-12      84     202 ..     292     408 ..     275     413 .. 0.88

  Alignments for each domain:
  == domain 1    score: 2.2 bits;  conditional E-value: 0.0031
    TIGR03903   2 tghkvaikllRedaaeeerlvaRFrReialCarLshPnivaLlDsG....eaedgllFavF 58 
                  t++++a+k++ +       +     +e ++ + L+hPn++++ D+G     ++++ l+ +F
  MMETSP1137-20121227|10005_1  51 TKEAMAVKVIDTR----RMKLESILKECTMLECLNHPNVIKIKDHGlgrkATGQDHLYYIF 107
                  7777788887554....44455677899999*************99444335566666666 PP

  == domain 2    score: 41.6 bits;  conditional E-value: 4.1e-15
    TIGR03903  84 LmlqvLDalaaahdaGvvhRDLkPqnimvsaadveshakvLDFGigaLlpgvedadeatltrttevlGsPaYaaPeqLRgepvt.aksDlYaWGLivleCLtGkrvvqGasvaevlykqL 202
                   +lq + ++ + h++G+ hRDLk +n+++++ +v    kv+DFG++   p   d    +    ++v Gs +YaaPe L g      ++D+++ G+ ++  L G   ++ as ++  y +L
  MMETSP1137-20121227|10005_1 292 FVLQLVAGVMHCHEHGIAHRDLKLENVLLTKDGV---VKVIDFGLSYRYPIRPDGTIDRSVPLKDVCGSKSYAAPEVLAGQGYDgFAADVWSIGVSLFAMLSGFFPLDEASAKDWRYTKL 408
                  689999************************9987...69***************9999999*******************98751689******99999999988888888887777666 PP

>> TIGR03724  arch_bud32: Kae1-associated kinase Bud32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.0   0.0   1.1e-09   2.3e-06     100     140 ..     297     338 ..     276     375 .. 0.78

  Alignments for each domain:
  == domain 1    score: 25.0 bits;  conditional E-value: 1.1e-09
    TIGR03724 100 GelvgklHkagivhgDlttsNiivkddk.lyliDfGLgkksk 140
                     v ++H++gi+h Dl  +N+++++d  + +iDfGL+++  
  MMETSP1137-20121227|10005_1 297 VAGVMHCHEHGIAHRDLKLENVLLTKDGvVKVIDFGLSYRYP 338
                  5567889*****************7655166*******9755 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (586 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        69  (0.0168211); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.16s 00:00:00.56 Elapsed: 00:00:00.80
# Mc/sec: 966.82
//
Query:       MMETSP1137-20121227|10006_1  [L=66]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (66 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        30  (0.00731351); expected 82.0 (0.02)
Passed bias filter:                       22  (0.00536324); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.26
# Mc/sec: 335.05
//
Query:       MMETSP1137-20121227|10007_1  [L=968]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.7e-05   20.0   0.0    0.00016   18.8   0.0    1.5  1  TIGR03674 fen_arch: flap structure-specific endonuclease


Domain annotation for each model (and alignments):
>> TIGR03674  fen_arch: flap structure-specific endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.0   3.8e-08   0.00016      74     253 ..      96     276 ..      85     293 .. 0.70

  Alignments for each domain:
  == domain 1    score: 18.8 bits;  conditional E-value: 3.8e-08
    TIGR03674  74 kpvyvFDGkppelKkeeleeRrevreeaeekleealekgdleeaa...kyakrsar.ldeeivedskkLlellgipyvqApsegEAqaaymvkkgdvdavgsqDYDsLlfGaprlvrnltisgkrklpkknvyvevkpElieLeevLkel...gitreqLidiailvGTDynegvkgiGpkkalkli 253
                    + v DG+    K+++ + Rr+ +  a+++  +a+++gd++ a+   k+a+  ++  ++ ++e++ +   ++ + + +A ++  A +  ++ +g v  ++sqD D +lf  +  v  +   +  kl+ ++    v +    L    +e+   g + +  +  a+l G Dy +  +g G +k  k++
  MMETSP1137-20121227|10007_1  96 IIILVLDGHKYPPKHATQSARRNDQSAAHQQALAAQSRGDAAGAEsawKLAAVPQEpYQHWLLEECLRRSLAFVVSWFEADAQLAALSLDLTAEGAVILAASQDSDLILFAPECKV--IYDWDPVKLTYRQ----VCLHTDVLGCSVTEWcfeGWNYDRFLCFAMLSGNDYFQNFPGWGLRKVYKAM 276
                  5689************************************865541115555544415666888887777778899999999999999999*******************765333..2223333343333....2222222322333321114466777777777777777777777777766665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (968 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        76  (0.0185275); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.57u 0.17s 00:00:00.74 Elapsed: 00:00:00.74
# Mc/sec: 1726.56
//
Query:       MMETSP1137-20121227|10009_1  [L=102]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00056   17.7   2.2     0.0013   16.6   1.5    1.5  1  TIGR02338 gimC_beta: prefoldin, beta subunit
     0.0016   16.4   4.0        0.1   10.6   0.3    2.1  2  TIGR00293 TIGR00293: prefoldin, alpha subunit


Domain annotation for each model (and alignments):
>> TIGR02338  gimC_beta: prefoldin, beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   1.5   6.2e-07    0.0013       7     101 ..       6     100 ..       3     102 .] 0.81

  Alignments for each domain:
  == domain 1    score: 16.6 bits;  conditional E-value: 6.2e-07
    TIGR02338   7 eqlaqlqqlqqqlqavltqkqqveaelkevekaLeelekleddtkvYksvGnllvktdkeevleeLeekketlelrvktlekQeerlrekleelq 101
                  + ++ +  l+ +l+++  + ++  +   + + a +e+   +dd ++  + G+   +tdk+++ e Le +k+  e  vk+le    +++  l++l+
  MMETSP1137-20121227|10009_1   6 KAINTFGRLNTRLNELEEEIKEKRSLYDQLDDAANEIILADDDEPIRFAFGECYFETDKDQADELLEKQKDKAEAEVKALEDEMGSIKSTLASLK 100
                  55666666666666666655555555666677888999999****************************************99999999888886 PP

>> TIGR00293  TIGR00293: prefoldin, alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.6   0.1   0.00041      0.85      97     126 ..      13      42 ..       5      45 .. 0.88
   2 !   10.6   0.3     5e-05       0.1      81     119 ..      61      99 ..      56     102 .] 0.59

  Alignments for each domain:
  == domain 1    score: 7.6 bits;  conditional E-value: 0.00041
    TIGR00293  97 elekaieklqeelqelaseaqeieqelqqk 126
                   l++++++l+ee++e++s ++++ ++++++
  MMETSP1137-20121227|10009_1  13 RLNTRLNELEEEIKEKRSLYDQLDDAANEI 42 
                  588899999*************99999987 PP

  == domain 2    score: 10.6 bits;  conditional E-value: 5e-05
    TIGR00293  81 ekdleeAieilkkkieelekaieklqeelqelaseaqei 119
                  e d ++A e l+k++++ e +++ l++e+  ++s+ +++
  MMETSP1137-20121227|10009_1  61 ETDKDQADELLEKQKDKAEAEVKALEDEMGSIKSTLASL 99 
                  556666666666666666666666666666666655554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (102 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       311  (0.0758167); expected 82.0 (0.02)
Passed bias filter:                      249  (0.0607021); expected 82.0 (0.02)
Passed Vit filter:                        34  (0.00828864); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.19u 0.18s 00:00:00.37 Elapsed: 00:00:00.39
# Mc/sec: 345.20
//
Query:       MMETSP1137-20121227|10010_1  [L=79]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (79 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        78  (0.0190151); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.17s 00:00:00.33 Elapsed: 00:00:00.36
# Mc/sec: 289.64
//
Query:       MMETSP1137-20121227|10012_1  [L=485]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (485 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        99  (0.0241346); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.14s 00:00:00.46 Elapsed: 00:00:00.45
# Mc/sec: 1422.55
//
Query:       MMETSP1137-20121227|10013_1  [L=308]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (308 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       125  (0.0304729); expected 82.0 (0.02)
Passed bias filter:                      105  (0.0255973); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.17s 00:00:00.45 Elapsed: 00:00:00.44
# Mc/sec: 923.92
//
Query:       MMETSP1137-20121227|10014_1  [L=149]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (149 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        38  (0.00926377); expected 82.0 (0.02)
Passed bias filter:                       32  (0.00780107); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.16s 00:00:00.33 Elapsed: 00:00:00.38
# Mc/sec: 517.54
//
Query:       MMETSP1137-20121227|10015_1  [L=271]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.2e-05   19.7   7.4    8.7e-05   19.5   5.1    1.2  1  TIGR01843 type_I_hlyD: type I secretion membrane fusion protein, HlyD family
     0.0016   14.0   8.7     0.0016   14.0   6.1    1.1  1  TIGR02169 SMC_prok_A: chromosome segregation protein SMC
  ------ inclusion threshold ------
       0.95    6.3   9.5        1.3    5.8   6.6    1.2  1  TIGR01554 major_cap_HK97: phage major capsid protein, HK97 family


Domain annotation for each model (and alignments):
>> TIGR01843  type_I_hlyD: type I secretion membrane fusion protein, HlyD family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   5.1   6.4e-08   8.7e-05     121     208 ..     174     261 ..     105     270 .. 0.83

  Alignments for each domain:
  == domain 1    score: 19.5 bits;  conditional E-value: 6.4e-08
    TIGR01843 121 davaelvkeqeslfesrksalraqlesleaqikqleaeleglqaqlqalrqqleliseelealrkLkekglvsrlelLelereraelq 208
                  +a+++l +++ +   +++ + ++ ++ +ea+ikqle e ++l++q+q+l+ ++e+i+++   +r L+ek+  ++++ L++ +++ + +
  MMETSP1137-20121227|10015_1 174 AAYQTLYESSIAFGMRKALQAEQGKADMEARIKQLEGEKKELERQVQELKAKAEAIEKREGERRALEEKKHAEEVQFLKRTNAQLKKE 261
                  46777777777777777777788899****************************************************9888776544 PP

>> TIGR02169  SMC_prok_A: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   6.1   1.2e-06    0.0016     306     390 ..     179     264 ..      80     271 .] 0.58

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 1.2e-06
    TIGR02169 306 kleraiaekeeeledaeerlakaeaeidklkeeieelereieeekkereklkeelkelkeele.elraeleevdkeaaelreelke 390
                    e++ia+  +++ +ae+ +a +ea+i++l+ e++eler+++e k++ e+++++  e+++ +e +  +e++ ++ ++a+l++el+ 
  MMETSP1137-20121227|10015_1 179 LYESSIAFGMRKALQAEQGKADMEARIKQLEGEKKELERQVQELKAKAEAIEKREGERRALEEkKHAEEVQFLKRTNAQLKKELET 264
                  44555555566666666666666666666666666666666666666555555554444433303334455555555555555443 PP

>> TIGR01554  major_cap_HK97: phage major capsid protein, HK97 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   6.6   0.00099       1.3      26     100 ..     191     261 ..     167     270 .. 0.66

  Alignments for each domain:
  == domain 1    score: 5.8 bits;  conditional E-value: 0.00099
    TIGR01554  26 eaeeekkekdalkaeidkleaeierleeaaaeeeakeaasgeagkeeeeeeeakeeaaeafraylrrgddalaee 100
                  + ++e+ + d ++a+i++le+e ++le++ +e++ak++a  + ++e ++ ee+k++++   +++l+r +++l++e
  MMETSP1137-20121227|10015_1 191 ALQAEQGKAD-MEARIKQLEGEKKELERQVQELKAKAEAIEKREGERRALEEKKHAEE---VQFLKRTNAQLKKE 261
                  3444455555.88888888888888888866666666666666555555555555443...55666655555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (271 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       276  (0.0672843); expected 82.0 (0.02)
Passed bias filter:                      128  (0.0312043); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.28u 0.19s 00:00:00.47 Elapsed: 00:00:00.43
# Mc/sec: 831.84
//
Query:       MMETSP1137-20121227|10016_1  [L=190]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (190 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        60  (0.014627); expected 82.0 (0.02)
Passed bias filter:                       40  (0.00975134); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.15s 00:00:00.35 Elapsed: 00:00:00.48
# Mc/sec: 522.46
//
Query:       MMETSP1137-20121227|10017_1  [L=563]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0019   16.5   0.1     0.0038   15.6   0.1    1.5  1  TIGR02196 GlrX_YruB: glutaredoxin-like protein, YruB-family
     0.0041   14.7   0.0     0.0063   14.1   0.0    1.2  1  TIGR00862 O-ClC: intracellular chloride channel protein
     0.0089   14.1   0.0      0.018   13.2   0.0    1.5  1  TIGR02181 GRX_bact: glutaredoxin 3
  ------ inclusion threshold ------
      0.015   13.6   0.1      0.034   12.4   0.0    1.6  1  TIGR02200 GlrX_actino: glutaredoxin-like protein
      0.043   11.9   0.0      0.092   10.8   0.0    1.5  1  TIGR02180 GRX_euk: glutaredoxin


Domain annotation for each model (and alignments):
>> TIGR02196  GlrX_YruB: glutaredoxin-like protein, YruB-family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.1   4.6e-06    0.0038       2      32 ..     120     152 ..     119     157 .. 0.85

  Alignments for each domain:
  == domain 1    score: 15.6 bits;  conditional E-value: 4.6e-06
    TIGR02196   2 vkvY..ttpwCppCkkakeyLkskgiafeeidv 32 
                  v++Y  t +wCp+C+k+   L++k i+f+   +
  MMETSP1137-20121227|10017_1 120 VTLYrdTAAWCPYCQKVWLLLEEKQIPFRVKKI 152
                  778866789*******************97766 PP

>> TIGR00862  O-ClC: intracellular chloride channel protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.0   7.7e-06    0.0063      16      82 ..     127     196 ..     108     213 .. 0.85

  Alignments for each domain:
  == domain 1    score: 14.1 bits;  conditional E-value: 7.7e-06
    TIGR00862  16 igncpfsqrlfmilwlkgvvfnvttvdlkr...kpeelknlapgtkppflvynkevktdvnkieefleev 82 
                     cp++q+++++l  k + f v  ++++    kp ++ + +pg+ +p l  + +  td   i  +l+ +
  MMETSP1137-20121227|10017_1 127 AAWCPYCQKVWLLLEEKQIPFRVKKINMRSygdKPPSFLQRVPGGLLPALELDDQFYTDSLPIMALLDGT 196
                  567************************985344888899999*****************99998888765 PP

>> TIGR02181  GRX_bact: glutaredoxin 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   0.0   2.1e-05     0.018       2      33 ..     121     154 ..     120     171 .. 0.79

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 2.1e-05
    TIGR02181   2 viY..tkksCpycsrAkalLeekgvefeeievdk 33 
                  ++Y  t + Cpyc++   lLeek++ f+  ++++
  MMETSP1137-20121227|10017_1 121 TLYrdTAAWCPYCQKVWLLLEEKQIPFRVKKINM 154
                  566447789****************887766665 PP

>> TIGR02200  GlrX_actino: glutaredoxin-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   4.2e-05     0.034       3      33 ..     121     153 ..     119     162 .. 0.82

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 4.2e-05
    TIGR02200   3 tvY..atswCgyCaslkrtLdkdgaeYevvdie 33 
                  t+Y  ++ wC+yC+++   L+++ +++ v  i+
  MMETSP1137-20121227|10017_1 121 TLYrdTAAWCPYCQKVWLLLEEKQIPFRVKKIN 153
                  66633578************9999999988876 PP

>> TIGR02180  GRX_euk: glutaredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00011     0.092       7      41 ..     128     160 ..     120     171 .. 0.77

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 0.00011
    TIGR02180   7 syCpYckkakelLkklkvkkalevveldklengse 41 
                   +CpYc+k+  lL+++++   + v  ++  + g++
  MMETSP1137-20121227|10017_1 128 AWCPYCQKVWLLLEEKQIP--FRVKKINMRSYGDK 160
                  58************99999..77777777666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (563 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        70  (0.0170648); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.37u 0.15s 00:00:00.52 Elapsed: 00:00:00.59
# Mc/sec: 1259.49
//
Query:       MMETSP1137-20121227|10018_1  [L=835]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (835 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       110  (0.0268162); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.51u 0.15s 00:00:00.66 Elapsed: 00:00:00.51
# Mc/sec: 2161.00
//
Query:       MMETSP1137-20121227|10020_1  [L=176]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (176 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        64  (0.0156021); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.12s 00:00:00.29 Elapsed: 00:00:00.64
# Mc/sec: 362.97
//
Query:       MMETSP1137-20121227|10021_1  [L=292]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (292 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        51  (0.012433); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.09s 00:00:00.32 Elapsed: 00:00:00.44
# Mc/sec: 875.93
//
Query:       MMETSP1137-20121227|10022_1  [L=45]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (45 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        60  (0.014627); expected 82.0 (0.02)
Passed bias filter:                       39  (0.00950756); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.17s 00:00:00.27 Elapsed: 00:00:00.53
# Mc/sec: 112.07
//
Query:       MMETSP1137-20121227|10024_1  [L=131]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (131 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        62  (0.0151146); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.13s 00:00:00.28 Elapsed: 00:00:00.28
# Mc/sec: 617.52
//
Query:       MMETSP1137-20121227|10025_1  [L=304]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.3e-10   35.9   1.0    4.3e-10   35.9   0.7    1.8  2  TIGR02917 PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein
    8.3e-06   22.1   3.6    1.2e-05   21.6   1.1    2.1  2  TIGR03939 PGA_TPR_OMP: poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA
    0.00033   18.1   6.2     0.0068   13.8   0.9    2.5  2  TIGR02521 type_IV_pilW: type IV pilus biogenesis/stability protein PilW


Domain annotation for each model (and alignments):
>> TIGR02917  PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.9   0.7   3.1e-13   4.3e-10     690     798 ..      88     197 ..      73     206 .. 0.88
   2 ?   -0.8   0.0     0.039        54     482     503 ..     229     251 ..     223     284 .. 0.63

  Alignments for each domain:
  == domain 1    score: 35.9 bits;  conditional E-value: 3.1e-13
    TIGR02917 690 kllkelekqkpkaalgfeleGdlalrqkdykaAiqaykkalkrapssqtvikLaeal.lasgntaeAaktleawLkehpkdavlrtalAelylaekdedkAakhYqtvvk 798
                  + l +l  q p++  +  le+ +  +  +++aA+q+y+  lk+ p++  ++k + al +  g+ aeAa++l + L     da + + lA+lyl +++++kAa   +++  
  MMETSP1137-20121227|10025_1  88 QYLGRLSTQFPESLRVKRLEAMMSEAGGELEAAMQKYEDILKQDPNNLYAMKRQVALlRGRGRYAEAARRLVDHLAVVCSDAEAWLQLADLYLXQQQYKKAAFCMEELIL 197
                  55667888999999999**********************************9887651578****************************************977666655 PP

  == domain 2    score: -0.8 bits;  conditional E-value: 0.039
    TIGR02917 482 akAreafekALkiep.dffpAla 503
                    Ar++f  AL+++p +++ Al 
  MMETSP1137-20121227|10025_1 229 RTARKYFAHALELKPsGNLRALY 251
                  44666666666665523444444 PP

>> TIGR03939  PGA_TPR_OMP: poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.6   1.1   8.4e-09   1.2e-05     393     489 ..      99     195 ..      75     203 .. 0.74
   2 ?   -1.3   0.0     0.073        99      98     144 ..     224     271 ..     223     289 .. 0.77

  Alignments for each domain:
  == domain 1    score: 21.6 bits;  conditional E-value: 8.4e-09
    TIGR03939 393 dyleaqslkvlllaysgdlseAekkleellatAPgNqslrlalaeveraRgwprrAeqllkkaeslepdslsaergqaetaldlqewrqaealiddl 489
                  + l ++ l++++  ++g+l++A++k e++l++ P N + + ++  + r Rg+  +A++ l    ++   ++ a  ++a ++l +q++++a   +++l
  MMETSP1137-20121227|10025_1  99 ESLRVKRLEAMMSEAGGELEAAMQKYEDILKQDPNNLYAMKRQVALLRGRGRYAEAARRLVDHLAVVCSDAEAWLQLADLYLXQQQYKKAAFCMEEL 195
                  4456677888888888888888888888888888888888888888888888877777777777776777777777888888888888887777766 PP

  == domain 2    score: -1.3 bits;  conditional E-value: 0.073
    TIGR03939  98 nekqwdkAlelyrkllqrdPk.npdlllGlaltladagkdeeAlkalk 144
                  n++q  +A +++  +l+ +P+ n  +l Gl+l  a agk ++  + ++
  MMETSP1137-20121227|10025_1 224 NAEQVRTARKYFAHALELKPSgNLRALYGLLLCCAAAGKGSKGRDVAE 271
                  6778889999999999999854889999*9999999999887766555 PP

>> TIGR02521  type_IV_pilW: type IV pilus biogenesis/stability protein PilW
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.0   0.2    0.0012       1.7      66     117 ..     102     153 ..      83     165 .. 0.62
   2 !   13.8   0.9     5e-06    0.0068      31     110 ..     169     256 ..     165     266 .. 0.85

  Alignments for each domain:
  == domain 1    score: 6.0 bits;  conditional E-value: 0.0012
    TIGR02521  66 danlalAlyyqqlgelekAeesfrkAltlkpnngdvlNNYGtFLcqqkkyee 117
                  +++   A++ +  gele+A +++++ l+++pnn  ++    + L  +++y e
  MMETSP1137-20121227|10025_1 102 RVKRLEAMMSEAGGELEAAMQKYEDILKQDPNNLYAMKRQVALLRGRGRYAE 153
                  5555566666666777777777777777777765554444444444444444 PP

  == domain 2    score: 13.8 bits;  conditional E-value: 5e-06
    TIGR02521  31 akirvqLaleYleqgdlekAkenlekAleldpkdadanlalAlyyqqlg.........elekAeesfrkAltlkpnngdvlNNYGtFLc 110
                  a++ +qLa  Yl q++++kA   +e+ + l+p ++  +   + ++ +l          +   A ++f +Al+lkp +g+++  YG  Lc
  MMETSP1137-20121227|10025_1 169 AEAWLQLADLYLXQQQYKKAAFCMEELILLNPMNYMYHVRYGEILFTLYgnerggnaeQVRTARKYFAHALELKP-SGNLRALYGLLLC 256
                  77889********************************998887766554455577777778899**********9.5788888999999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (304 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       126  (0.0307167); expected 82.0 (0.02)
Passed bias filter:                      100  (0.0243784); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.30u 0.14s 00:00:00.44 Elapsed: 00:00:00.69
# Mc/sec: 581.52
//
Query:       MMETSP1137-20121227|10029_1  [L=336]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (336 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       119  (0.0290102); expected 82.0 (0.02)
Passed bias filter:                      106  (0.0258411); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.15s 00:00:00.42 Elapsed: 00:00:00.76
# Mc/sec: 583.53
//
Query:       MMETSP1137-20121227|10030_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        26  (0.00633837); expected 82.0 (0.02)
Passed bias filter:                       25  (0.00609459); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.15s 00:00:00.28 Elapsed: 00:00:00.24
# Mc/sec: 291.48
//
Query:       MMETSP1137-20121227|10031_1  [L=501]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (501 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        77  (0.0187713); expected 82.0 (0.02)
Passed bias filter:                       40  (0.00975134); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.17s 00:00:00.49 Elapsed: 00:00:00.61
# Mc/sec: 1084.04
//
Query:       MMETSP1137-20121227|10032_1  [L=128]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (128 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        78  (0.0190151); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.13s 00:00:00.28 Elapsed: 00:00:00.75
# Mc/sec: 225.26
//
Query:       MMETSP1137-20121227|10034_1  [L=204]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (204 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       180  (0.043881); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.12s 00:00:00.31 Elapsed: 00:00:00.36
# Mc/sec: 747.94
//
Query:       MMETSP1137-20121227|10035_1  [L=395]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (395 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        67  (0.0163335); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.15s 00:00:00.42 Elapsed: 00:00:00.42
# Mc/sec: 1241.33
//
Query:       MMETSP1137-20121227|10036_1  [L=332]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (332 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        82  (0.0199902); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.17s 00:00:00.44 Elapsed: 00:00:00.61
# Mc/sec: 718.37
//
Query:       MMETSP1137-20121227|10038_1  [L=104]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (104 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        26  (0.00633837); expected 82.0 (0.02)
Passed bias filter:                       24  (0.0058508); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.13s 00:00:00.26 Elapsed: 00:00:00.26
# Mc/sec: 527.96
//
Query:       MMETSP1137-20121227|10039_1  [L=775]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0057   13.1   0.9        0.7    6.2   0.0    2.7  3  TIGR02289 M3_not_pepF: oligoendopeptidase, M3 family
  ------ inclusion threshold ------
      0.087    9.5   1.4       0.98    6.0   0.1    2.7  3  TIGR00181 pepF: oligoendopeptidase F


Domain annotation for each model (and alignments):
>> TIGR02289  M3_not_pepF: oligoendopeptidase, M3 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0     0.071   1.5e+02       2      74 ..      90     163 ..      89     190 .. 0.77
   2 !    4.4   0.0    0.0012       2.5     157     238 ..     296     372 ..     283     412 .. 0.71
   3 !    6.2   0.0   0.00034       0.7     334     380 ..     521     569 ..     518     579 .. 0.74

  Alignments for each domain:
  == domain 1    score: -1.5 bits;  conditional E-value: 0.071
    TIGR02289   2 eelekklkellekiissk..eelekiikelaevkkdieekielayirlsvdtddeefkdeeeefqdeikpllkry 74 
                  ++le  + +l e   ss+    +  +i+e+++v + +e    ++   + v   d e++++++  q +++ + +++
  MMETSP1137-20121227|10039_1  90 KQLETNFGKLEESLSSSEdgATYASVIEEMEKVENPLEYAWGVVGHLMGVKNSD-ELREAHSAMQPQVVQVSTKL 163
                  68899999999999999877788999********99998777766666666666.77777777776666554444 PP

  == domain 2    score: 4.4 bits;  conditional E-value: 0.0012
    TIGR02289 157 dRstRkkAkealseflaeveeeldriydeLvkvRtkiAknlgfeNyvdlayklleRtdYsaedvakyresvlkyvvPlltkl 238
                   R++R+k ++a +    +  e+ + ++  +  +++++A  lgf+ y +l  +++     s e v ++   ++++  P ++k 
  MMETSP1137-20121227|10039_1 296 SRDVREKLYRAFVT---RAGEQNEPLIRSILSLKQEQAALLGFKTYAELSIERKMA--ESVEAVDELTSMLREKAFPAAQKD 372
                  56666666655443...334444567888999*****************9998766..577788888888888888877664 PP

  == domain 3    score: 6.2 bits;  conditional E-value: 0.00034
    TIGR02289 334 tsgdidvliHEvGHafqvyeslk.qllpeyr.wltaeaaElaSmslEll 380
                  t+ ++ +l+HE GH +q   ++  +++   +  ++ +a El S  +E  
  MMETSP1137-20121227|10039_1 521 TFSEVTTLFHETGHGLQHMLTTVpHSPAAGIsGVEWDAVELPSQFMENW 569
                  7889************987666645555444146778888888888855 PP

>> TIGR00181  pepF: oligoendopeptidase F
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0      0.06   1.2e+02     196     258 ..     289     348 ..     279     411 .. 0.60
   2 ?    6.0   0.1   0.00048      0.98     374     395 ..     521     542 ..     519     569 .. 0.82
   3 ?    0.7   0.0      0.02        41     512     562 ..     671     728 ..     665     731 .. 0.70

  Alignments for each domain:
  == domain 1    score: -0.9 bits;  conditional E-value: 0.06
    TIGR00181 196 kvleknkdreiRkkayesfykaykkskntlaallaaevkknkalaklrnyesvieaslfsdev 258
                    ++  k+r++R+k y++f+    ++ + l   + +    ++++a l +++ + e s++ +  
  MMETSP1137-20121227|10039_1 289 PAMKFVKSRDVREKLYRAFVTRAGEQNEPLIRSILSL---KQEQAALLGFKTYAELSIERKMA 348
                  5566778999999999999999999888765555544...44445555555554444444333 PP

  == domain 2    score: 6.0 bits;  conditional E-value: 0.00048
    TIGR00181 374 tlndvftLvHElGHsvhslfss 395
                  t ++v tL HE GH ++ +++ 
  MMETSP1137-20121227|10039_1 521 TFSEVTTLFHETGHGLQHMLTT 542
                  5689************999876 PP

  == domain 3    score: 0.7 bits;  conditional E-value: 0.02
    TIGR00181 512 Yag.fYvYkYaiglva.alalaekikeegkkaveky...l..kfLksGGskePletlk 562
                  Ya+ +Y+Yk+a  l+a a a  e++  +++++v+++   +  ++L+ GG k+P e+ +
  MMETSP1137-20121227|10039_1 671 YAAgYYSYKWAEVLSAdAFAAFEEVGLDNEEQVQEVgrrFrnTVLSLGGGKHPSEVFR 728
                  5555*******98887455666777555555555432226667899999999998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (775 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       135  (0.0329108); expected 82.0 (0.02)
Passed bias filter:                      113  (0.0275475); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.14s 00:00:00.66 Elapsed: 00:00:00.57
# Mc/sec: 1763.65
//
Query:       MMETSP1137-20121227|10040_1  [L=247]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (247 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       109  (0.0265724); expected 82.0 (0.02)
Passed bias filter:                      101  (0.0246221); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.16s 00:00:00.39 Elapsed: 00:00:00.28
# Mc/sec: 1164.33
//
Query:       MMETSP1137-20121227|10041_1  [L=629]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (629 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       142  (0.0346173); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.16s 00:00:00.56 Elapsed: 00:00:00.39
# Mc/sec: 2128.75
//
Query:       MMETSP1137-20121227|10042_1  [L=286]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (286 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        55  (0.0134081); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.15s 00:00:00.37 Elapsed: 00:00:00.44
# Mc/sec: 857.93
//
Query:       MMETSP1137-20121227|10043_1  [L=151]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (151 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        95  (0.0231594); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.10s 00:00:00.28 Elapsed: 00:00:00.31
# Mc/sec: 642.91
//
Query:       MMETSP1137-20121227|10044_1  [L=343]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (343 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       120  (0.029254); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.14s 00:00:00.38 Elapsed: 00:00:00.47
# Mc/sec: 963.24
//
Query:       MMETSP1137-20121227|10045_1  [L=170]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (170 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        30  (0.00731351); expected 82.0 (0.02)
Passed bias filter:                       30  (0.00731351); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.15s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 801.36
//
Query:       MMETSP1137-20121227|10046_1  [L=80]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (80 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        62  (0.0151146); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.13s 00:00:00.25 Elapsed: 00:00:00.38
# Mc/sec: 277.87
//
Query:       MMETSP1137-20121227|10048_1  [L=244]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        3.6    2.9  12.3        3.7    2.8   8.5    1.0  1  TIGR00927 2A1904: K+-dependent Na+/Ca+ exchanger


Domain annotation for each model (and alignments):
>> TIGR00927  2A1904: K+-dependent Na+/Ca+ exchanger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   8.5    0.0009       3.7     796     886 ..      98     188 ..       6     233 .. 0.40

  Alignments for each domain:
  == domain 1    score: 2.8 bits;  conditional E-value: 0.0009
    TIGR00927 796 GeieaerkgedegegeieakeaevkGeeeeeeveaeeeteaeGdedegeieaeeeGeekededeg.eieakeevevegdedeteieaeeeae 886
                  G  ++ + +e  +    +a +a    +ee+e +e+++  ++eGd+ ++e+e ++  + ++ ed+g + e++e++   + e+e + e + + e
  MMETSP1137-20121227|10048_1  98 GGEPSVGDEEALKRQADQAVTAFRSLQEEKELLEKGGAKQTEGDKGDKEAEKQATKKDTKTEDKGaKTESGEATTIAALEEELK-EMKLKME 188
                  222222222211111112222222222233333444444444433333333332222222222210112222222221111111.1111111 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (244 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       328  (0.079961); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.27u 0.15s 00:00:00.42 Elapsed: 00:00:00.48
# Mc/sec: 670.94
//
Query:       MMETSP1137-20121227|10049_1  [L=151]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (151 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        64  (0.0156021); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.13s 00:00:00.28 Elapsed: 00:00:00.65
# Mc/sec: 306.62
//
Query:       MMETSP1137-20121227|10050_1  [L=235]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-05   22.7   0.2      2e-05   22.2   0.1    1.2  1  TIGR01130 ER_PDI_fam: protein disulfide isomerases
    0.00041   18.4   0.1     0.0021   16.2   0.0    2.0  2  TIGR01126 pdi_dom: protein disulfide-isomerase domain


Domain annotation for each model (and alignments):
>> TIGR01130  ER_PDI_fam: protein disulfide isomerases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.2   0.1   9.6e-09     2e-05       3     171 ..      25     209 ..      23     233 .. 0.60

  Alignments for each domain:
  == domain 1    score: 22.2 bits;  conditional E-value: 9.6e-09
    TIGR01130   3 vleltkenfddlikenelvLveF...YAPWCGHCksLaPeYekAAeelkkk..spkvklakvDateekelaqkygvs..GyPtLkifrnge....sssdYnGpReaegivkylkkqsgPask...eletvedl.ekllekkevvvvgvfkd.....ldselvetflevaeklrdkfkavasssdeaalk 171
                  +l+l + +fd +i  +  v v+F   YA   G       eY+k+  e +++  s++v + +    e+++l ++yg++   +P  ++f +g+    s+  Y+G+ +++++v+++++++g       ++++++++ ++++ ++e + +   ++     + +++++ + +v  k++ + ++va+++  + lk
  MMETSP1137-20121227|10050_1  25 ILKLDNTTFDRIIDGSRNVFVRFdkeYAY--GEAHDAWKEYAKTVGESAADllSADVGVSEYGEKENSDLIERYGIKtaDFPQYRLFVKGTsglgSPIAYTGAAKTDEFVRFVQEKAGAWIGlpgQIKELDEIaKEFMGSTEQAALLQKAEaaaasSTQDTAKYYVKVMTKATGDKDFVAKETT-R-LK 209
                  67888888888888888888888666664..666666667765433322221133478888888999*********7557*********998888899******************99655411135555553145665533333322221011113344444555555555544444443222.1.22 PP

>> TIGR01126  pdi_dom: protein disulfide-isomerase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0     1e-06    0.0021       4     104 ..      31     138 ..      28     139 .. 0.72
   2 ?   -0.1   0.0      0.12   2.5e+02      36      65 ..     152     182 ..     142     215 .. 0.61

  Alignments for each domain:
  == domain 1    score: 16.2 bits;  conditional E-value: 1e-06
    TIGR01126   4 enfdelvldenkdvlvef...yaPWCGh..CkklaPeyeklakelkkeeekvkiakvdataekelaskfkvsg..fPtlkffkkgkke...pvdyeGeReaeelvefveek 104
                   +fd ++   +++v+v+f   ya    h   k+ a +  + a++l +   +v +++   +++++l +++++++  fP  ++f kg++    p+ y+G+ +++e+v fv+ek
  MMETSP1137-20121227|10050_1  31 TTFDRIID-GSRNVFVRFdkeYAYGEAHdaWKEYAKTVGESAADLLS--ADVGVSEYGEKENSDLIERYGIKTadFPQYRLFVKGTSGlgsPIAYTGAAKTDEFVRFVQEK 138
                  66777766.78888888844444333342235555555555555554..369999999999*********98555*******9998744449*****************98 PP

  == domain 2    score: -0.1 bits;  conditional E-value: 0.12
    TIGR01126  36 yeklakelkkeeek.vkiakvdataekelas 65 
                   +++ake+  ++e+   + k +a a +++++
  MMETSP1137-20121227|10050_1 152 LDEIAKEFMGSTEQaALLQKAEAAAASSTQD 182
                  5778888876655414455555555443332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (235 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       207  (0.0504632); expected 82.0 (0.02)
Passed bias filter:                      125  (0.0304729); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.23u 0.15s 00:00:00.38 Elapsed: 00:00:00.41
# Mc/sec: 756.52
//
Query:       MMETSP1137-20121227|10051_1  [L=223]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (223 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        77  (0.0187713); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.14s 00:00:00.33 Elapsed: 00:00:00.33
# Mc/sec: 891.93
//
Query:       MMETSP1137-20121227|10054_1  [L=79]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (79 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        52  (0.0126767); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.39
# Mc/sec: 267.36
//
Query:       MMETSP1137-20121227|10055_1  [L=3759]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (3759 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       226  (0.0550951); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                        41  (0.00999512); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 2.46u 0.16s 00:00:02.62 Elapsed: 00:00:02.11
# Mc/sec: 2351.41
//
Query:       MMETSP1137-20121227|10056_1  [L=251]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (251 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        60  (0.014627); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.13s 00:00:00.33 Elapsed: 00:00:00.43
# Mc/sec: 770.45
//
Query:       MMETSP1137-20121227|10057_1  [L=310]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (310 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       153  (0.0372989); expected 82.0 (0.02)
Passed bias filter:                      114  (0.0277913); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.16s 00:00:00.44 Elapsed: 00:00:00.46
# Mc/sec: 889.49
//
Query:       MMETSP1137-20121227|10058_1  [L=148]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (148 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        25  (0.00609459); expected 82.0 (0.02)
Passed bias filter:                       23  (0.00560702); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.17s 00:00:00.33 Elapsed: 00:00:00.31
# Mc/sec: 630.14
//
Query:       MMETSP1137-20121227|10059_1  [L=256]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.41    8.9   4.4       0.73    8.1   3.1    1.4  1  TIGR00531 BCCP: acetyl-CoA carboxylase, biotin carboxyl carrier protein


Domain annotation for each model (and alignments):
>> TIGR00531  BCCP: acetyl-CoA carboxylase, biotin carboxyl carrier protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   3.1   0.00018      0.73       8      72 ..      21      85 ..      14      99 .. 0.63

  Alignments for each domain:
  == domain 1    score: 8.1 bits;  conditional E-value: 0.00018
    TIGR00531  8 eLiklveesditelelkeeevevklkkeaaaakksvlqqaaapvvaqvpavasaavpaaavaaea 72
                  L+++ +es+ +++++k++ + +    e  aa+++++ +a a++  q+  +++aa+  +a+a++a
  MMETSP1137-20121227|10059_1 21 ALLRQAKESTHEQVHIKKQMIALATPDELRAAVNAIMAAAEASASSQQSETPAAAAAPPAPAEQA 85
                 56667777777777777777777777777777777777666666666664444444444555444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (256 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       217  (0.052901); expected 82.0 (0.02)
Passed bias filter:                      168  (0.0409556); expected 82.0 (0.02)
Passed Vit filter:                        18  (0.0043881); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.24u 0.16s 00:00:00.40 Elapsed: 00:00:00.47
# Mc/sec: 718.92
//
Query:       MMETSP1137-20121227|10060_1  [L=122]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (122 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        53  (0.0129205); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.17s 00:00:00.33 Elapsed: 00:00:00.34
# Mc/sec: 473.61
//
Query:       MMETSP1137-20121227|10062_1  [L=143]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (143 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       448  (0.109215); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.16s 00:00:00.36 Elapsed: 00:00:00.32
# Mc/sec: 589.83
//
Query:       MMETSP1137-20121227|10063_1  [L=42]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (42 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        29  (0.00706972); expected 82.0 (0.02)
Passed bias filter:                       29  (0.00706972); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:00.46
# Mc/sec: 120.51
//
Query:       MMETSP1137-20121227|10064_1  [L=199]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (199 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       107  (0.0260848); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.14s 00:00:00.33 Elapsed: 00:00:00.40
# Mc/sec: 656.65
//
Query:       MMETSP1137-20121227|10065_1  [L=105]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (105 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        38  (0.00926377); expected 82.0 (0.02)
Passed bias filter:                       38  (0.00926377); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.15s 00:00:00.29 Elapsed: 00:00:00.37
# Mc/sec: 374.56
//
Query:       MMETSP1137-20121227|10066_1  [L=301]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (301 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       110  (0.0268162); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.15s 00:00:00.39 Elapsed: 00:00:00.45
# Mc/sec: 882.86
//
Query:       MMETSP1137-20121227|10067_1  [L=276]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0012   16.9   0.0     0.0028   15.6   0.0    1.6  2  TIGR01575 rimI: ribosomal-protein-alanine acetyltransferase
  ------ inclusion threshold ------
      0.047   11.6   0.0       0.23    9.4   0.0    2.1  3  TIGR03585 PseH: pseudaminic acid biosynthesis N-acetyl transferase


Domain annotation for each model (and alignments):
>> TIGR01575  rimI: ribosomal-protein-alanine acetyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0      0.86   1.8e+03      68      95 ..      84     111 ..      70     113 .. 0.71
   2 !   15.6   0.0   1.4e-06    0.0028      60     115 ..     211     266 ..     196     271 .. 0.90

  Alignments for each domain:
  == domain 1    score: -3.1 bits;  conditional E-value: 0.86
    TIGR01575  68 qgqGiGraLlkelikeakergvkeifLE 95 
                  q+ G  +  +++l +++++ +++++ LE
  MMETSP1137-20121227|10067_1  84 QQAGAVKVSVDQLRQDMQDGACECLLLE 111
                  4555555666777777777777777777 PP

  == domain 2    score: 15.6 bits;  conditional E-value: 1.4e-06
    TIGR01575  60 niavkpeyqgqGiGraLlkelikeakergvkeifLEVResNvaAqaLYkklgfkei 115
                   + v+pe +g+G G+aLl+++ + a+ rg+ ++       N++A+a+Y  +  +  
  MMETSP1137-20121227|10067_1 211 DLYVRPEARGKGGGTALLAAVARVAHARGCPRLQWQALDWNKKAIAFYTGVQINAS 266
                  678*********************************************98777655 PP

>> TIGR03585  PseH: pseudaminic acid biosynthesis N-acetyl transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0      0.56   1.2e+03      72     104 ..      48      80 ..      45      93 .. 0.69
   2 ?   -1.6   0.0      0.26   5.3e+02      45      72 ..     155     182 ..     150     210 .. 0.79
   3 ?    9.4   0.0   0.00011      0.23      82     132 ..     212     262 ..     205     273 .. 0.84

  Alignments for each domain:
  == domain 1    score: -2.7 bits;  conditional E-value: 0.56
    TIGR03585  72 nlvhksaalgiYanpkvkkgkGsvleealleya 104
                    + +++ +g Y+  +  +g   v++  + e+a
  MMETSP1137-20121227|10067_1  48 SVFDRRCRIGRYTVRQATPGDADVVLGLICELA 80 
                  566788999999877777777777666665555 PP

  == domain 2    score: -1.6 bits;  conditional E-value: 0.26
    TIGR03585  45 lkqdaekryflveqesepiGvisltdin 72 
                  + +da+kr  l ++ ++  G++s++   
  MMETSP1137-20121227|10067_1 155 AAEDARKREVLAKAAERRTGTASVASSA 182
                  5689999999999999999999988655 PP

  == domain 3    score: 9.4 bits;  conditional E-value: 0.00011
    TIGR03585  82 iYanpkvk.kgkGsvleealleyafeklklkkLkleVlesNekalklyekfg 132
                  +Y  p+ + kg G  l+ a+ ++a    ++  L+ + l  N+ka+++y+ ++
  MMETSP1137-20121227|10067_1 212 LYVRPEARgKGGGTALLAAVARVAHA-RGCPRLQWQALDWNKKAIAFYTGVQ 262
                  68899999888889998888887765.5********************9765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (276 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       226  (0.0550951); expected 82.0 (0.02)
Passed bias filter:                      119  (0.0290102); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.25u 0.17s 00:00:00.42 Elapsed: 00:00:00.38
# Mc/sec: 958.66
//
Query:       MMETSP1137-20121227|10068_1  [L=99]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (99 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       131  (0.0319356); expected 82.0 (0.02)
Passed bias filter:                      109  (0.0265724); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.31
# Mc/sec: 421.51
//
Query:       MMETSP1137-20121227|10069_1  [L=359]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.022   12.3  12.3      0.035   11.6   8.5    1.3  1  TIGR03789 pdsO: proteobacterial sortase system OmpA family protein


Domain annotation for each model (and alignments):
>> TIGR03789  pdsO: proteobacterial sortase system OmpA family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   8.5   8.6e-06     0.035      81     144 ..     256     318 ..     246     324 .. 0.78

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 8.6e-06
    TIGR03789  81 ealkqaqseiakqeqqlvaltekqqaleqleaeyqqaqkeletlqqeqeqlleelalemnvqFr 144
                   + +q  +++a+q+qq++a+ ++q+a+eq +  y+q+q++ +++q+ q+      + + +v + 
  MMETSP1137-20121227|10069_1 256 AEEQQYAAQVAEQQQQMQAQAAAQAAYEQEQYAYAQQQQQYAEEQAAQQYVDP-AMAQQQVAYA 318
                  445788899*********************************99988775443.3555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (359 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       414  (0.100926); expected 82.0 (0.02)
Passed bias filter:                      138  (0.0336421); expected 82.0 (0.02)
Passed Vit filter:                        21  (0.00511945); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.15s 00:00:00.48 Elapsed: 00:00:00.40
# Mc/sec: 1184.60
//
Query:       MMETSP1137-20121227|10070_1  [L=621]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-29  101.0   0.1    2.3e-29  100.3   0.1    1.3  1  TIGR01963 PHB_DH: 3-hydroxybutyrate dehydrogenase
    3.3e-19   67.3   0.0    5.2e-19   66.7   0.0    1.2  1  TIGR01829 AcAcCoA_reduct: acetoacetyl-CoA reductase
    4.3e-19   67.0   0.0    6.5e-19   66.4   0.0    1.2  1  TIGR01830 3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase
    1.6e-17   61.6   0.0    2.7e-17   60.8   0.0    1.4  1  TIGR02415 23BDH: acetoin reductases
    1.7e-17   61.6   0.0    2.8e-17   60.9   0.0    1.2  1  TIGR01832 kduD: 2-deoxy-D-gluconate 3-dehydrogenase
    2.2e-15   54.6   1.1    1.3e-14   52.1   0.7    2.0  1  TIGR03971 SDR_subfam_1: oxidoreductase, SDR family
    6.9e-15   52.9   1.0    1.3e-14   52.1   0.7    1.3  1  TIGR03206 benzo_BadH: 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase
    1.1e-10   38.4   1.1    1.6e-10   37.8   0.7    1.1  1  TIGR02632 RhaD_aldol-ADH: rhamnulose-1-phosphate aldolase/alcohol dehydrogenase
      2e-09   35.0   0.2    3.4e-09   34.2   0.1    1.3  1  TIGR01831 fabG_rel: putative 3-oxoacyl-(acyl-carrier-protein) reductase
    1.1e-08   32.7   0.0    3.4e-08   31.0   0.0    1.7  1  TIGR01500 sepiapter_red: sepiapterin reductase
    2.6e-07   28.0   0.6    4.5e-07   27.2   0.4    1.3  1  TIGR03325 BphB_TodD: cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase
     0.0021   15.0   0.8       0.14    9.1   0.0    2.3  2  TIGR02685 pter_reduc_Leis: pteridine reductase
     0.0062   13.8   0.0       0.14    9.4   0.0    2.8  2  TIGR00068 glyox_I: lactoylglutathione lyase
  ------ inclusion threshold ------
      0.022   11.5   0.4       0.25    8.0   0.2    2.3  2  TIGR03466 HpnA: hopanoid-associated sugar epimerase


Domain annotation for each model (and alignments):
>> TIGR01963  PHB_DH: 3-hydroxybutyrate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  100.3   0.1   7.7e-32   2.3e-29       2     190 ..      41     224 ..      40     232 .. 0.93

  Alignments for each domain:
  == domain 1    score: 100.3 bits;  conditional E-value: 7.7e-32
    TIGR01963   2 kvalvtGaasGiglaiakelaaaGakvvvndleeeaaeaaakeleeaggevlalkadvtkeeeiadlieavaaefgsldi..LvnnAGiqhvapieefptekfekiiavnltsafhtiraalpimkkqgwGriiniasvhglvasafKsaYvaaKHglvGltKvlAlEvAetgitanaicPgyvrtpLvek 190
                  + +l+tG  +G g+++a++   aG+kvv    +e++a++       a+++++ ++ad+t +e ++++++a+ a++g++ +  LvnnAG+    +++  p++ +e+ +a+n +++++++ a lp +k   +Gr++n++sv+g va +  +aY a+KH+l  ++ vl  E+   ++ + ++ Pg +rtpL e+
  MMETSP1137-20121227|10070_1  41 RCILLTGCDTGFGRHVAQQALDAGFKVVAACYTEAGAATF------ASTTATIVVADLTTAEGVERVVKAALAAAGDAGLfaLVNNAGLCLPGNVDWLPPDAYERSMALNFHAPVKLTYALLPALKS-TRGRVVNVTSVDGVVALPSTAAYSASKHALEAFSDVLRAEMLPWDVNVVVVEPGTMRTPLAEA 224
                  789*************************998888776655......556788899********************99875559*****************************************986.69**********************************************************886 PP

>> TIGR01829  AcAcCoA_reduct: acetoacetyl-CoA reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.7   0.0   1.8e-21   5.2e-19       2     207 ..      42     240 ..      41     254 .. 0.88

  Alignments for each domain:
  == domain 1    score: 66.7 bits;  conditional E-value: 1.8e-21
    TIGR01829   2 valvtGglgGiGtaickrlakdGykvvanvapneerakewlqekevegfdvavvkadvssfeeakaavakveaelGpvdv..lvnnaGitrdavfkkmtkeqWeevidtnlnsvfnvtrpviegmlergfGriinissvnGlkGqfGqanysaakaGliGftkalaqegakkgvtvnviaPGyiatemvkavredvlkkivaqiPvkr 207
                    l+tG+  G G+ ++++  ++G+kvva++++++ +a+ ++ ++ +     ++v ad+++ e  +++v+   a+ G+  +  lvnnaG+     +  +  +++e  ++ n+++  ++t  ++ +++  + Gr++n++sv+G+      a ysa+k  l  f+  l +e    +v v v+ PG + t++ +a  +  l++   + P +r
  MMETSP1137-20121227|10070_1  42 CILLTGCDTGFGRHVAQQALDAGFKVVAACYTEAGAAT-FA-STTA-----TIVVADLTTAEGVERVVKAALAAAGDAGLfaLVNNAGLCLPGNVDWLPPDAYERSMALNFHAPVKLTYALLPALK-STRGRVVNVTSVDGVVALPSTAAYSASKHALEAFSDVLRAEMLPWDVNVVVVEPGTMRTPLAEAFADGWLRSFR-EAPAER 240
                  5699***************************7765543.33.3333.....46789*******************99775449***************************************9986.568*************************************************************9988777654.345555 PP

>> TIGR01830  3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.4   0.0   2.2e-21   6.5e-19       2     193 ..      44     229 ..      43     249 .. 0.87

  Alignments for each domain:
  == domain 1    score: 66.4 bits;  conditional E-value: 2.2e-21
    TIGR01830   2 lvtGasrgiGkaiakklakegakvviterskeekaeelaeelkeagvkaaavkldvsdeeevkelveeveeelge..idilvnnAGitrDklllrmkeedwdevikvnLkgvfnvtkavlkkmikkrsGriinissvvgllGnagqanYaasKaGligltkslakElasrnitvnavaPGfietdmteklsekv 193
                  l+tG   g G+ +a++  ++g+kvv     +e+     a+++++  ++a++v++d++ +e v+++v+++ +++g+  +  lvnnAG+   + +  +  + +++ +++n ++  ++t a l ++ k+ +Gr++n++sv g++  +  a Y+asK  l +++  l  E+   +++v +v PG ++t++ e++ +  
  MMETSP1137-20121227|10070_1  44 LLTGCDTGFGRHVAQQALDAGFKVVAACY-TEAG----AATFAS--TTATIVVADLTTAEGVERVVKAALAAAGDagLFALVNNAGLCLPGNVDWLPPDAYERSMALNFHAPVKLTYALLPAL-KSTRGRVVNVTSVDGVVALPSTAAYSASKHALEAFSDVLRAEMLPWDVNVVVVEPGTMRTPLAEAFADGW 229
                  89**********************99955.3333....333333..357799******************99996125679***********************************9988776.6678**********************************************************99987765 PP

>> TIGR02415  23BDH: acetoin reductases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.8   0.0   9.3e-20   2.7e-17       3     191 ..      43     225 ..      41     244 .. 0.91

  Alignments for each domain:
  == domain 1    score: 60.8 bits;  conditional E-value: 9.3e-20
    TIGR02415   3 alvtGaaqGiGkaiaerLakdGfavavadlneetaketakelkekgtkavavkldvsdkseveeaveqaveklGe..ldvlvnnaGvalvtpileiteeeleklynvnvkgvlfGiqaaaekfkklkhkGkiinaasiagvegspelsaysstkfavrgltqtaakeLakkgitvnayaPGivktemreei 191
                   l+tG+  G G+ +a++  + Gf+v+ a + e+ a+  a+      t a +v++d+++ + ve++v+ a +  G+  l  lvnnaG++l   ++ + ++  e+  ++n ++ +    a   ++k   ++G+++n +s+ gv++ p  +ays++k+a+ ++  +   e+ +  + v    PG+++t++ e  
  MMETSP1137-20121227|10070_1  43 ILLTGCDTGFGRHVAQQALDAGFKVVAACYTEAGAATFAS------TTATIVVADLTTAEGVERVVKAALAAAGDagLFALVNNAGLCLPGNVDWLPPDAYERSMALNFHAPVKLTYALLPALKS--TRGRVVNVTSVDGVVALPSTAAYSASKHALEAFSDVLRAEMLPWDVNVVVVEPGTMRTPLAEAF 225
                  689*****************************99987664......68999******************999997335679****************************9988777777777764..68*********************************************************98865 PP

>> TIGR01832  kduD: 2-deoxy-D-gluconate 3-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.9   0.0   9.5e-20   2.8e-17       4     194 ..      39     225 ..      37     243 .. 0.88

  Alignments for each domain:
  == domain 1    score: 60.9 bits;  conditional E-value: 9.5e-20
    TIGR01832   4 eGkvalvtGantGlGqgiavglaeaGadivgvgiselsetqekvealGrkflslkadladeeaakalvdeaveeag..kidilvnnaGiirredavefsekdwddvlnvnlkavfllsqavakkllkqGrkgkiiniasllsfqGGirvpsytasksavaGltkllanewakkginvnaiaPGyletnnteal 194
                  +G+ +l+tG++tG+G+ +a    +aG ++v++  +e+  +    +   ++++ + adl+  e+++++v+ a+++ag   +  lvnnaG+    +   ++   ++  + +n++a   l+ a+   +lk+  +g+++n++s+         ++y+ask+a+  ++ +l +e+   ++nv  + PG + t  +ea+
  MMETSP1137-20121227|10070_1  39 NGRCILLTGCDTGFGRHVAQQALDAGFKVVAACYTEAGAA----TFASTTATIVVADLTTAEGVERVVKAALAAAGdaGLFALVNNAGLCLPGNVDWLPPDAYERSMALNFHAPVKLTYALLP-ALKST-RGRVVNVTSVDGVVALPSTAAYSASKHALEAFSDVLRAEMLPWDVNVVVVEPGTMRTPLAEAF 225
                  69*****************************998765432....33456678899*******************99445778***********9999******************99998765.56666.8*******9988887778889***********************************9877766 PP

>> TIGR03971  SDR_subfam_1: oxidoreductase, SDR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.1   0.7   4.5e-17   1.3e-14      67     205 ..      85     223 ..      39     246 .. 0.91

  Alignments for each domain:
  == domain 1    score: 52.1 bits;  conditional E-value: 4.5e-17
    TIGR03971  67 vlarkadvrkleelravveegveefGr..ldvvvanaGvlsygrafelseeqWdtvldvnlkGvWktvkavvPalierknGGsiiivssvaglkalpglahyaaakhGlvgltktlanelaeygirvnsihPtsvdtamie 205
                  + + +ad+ + e ++ vv+ +++  G   l  +v+naG+   g++  l +++++  + +n++   k   a +Pal   +  G ++ v+sv g++alp +a y+a+kh l ++ + l  e+ ++++ v +++P +++t++ e
  MMETSP1137-20121227|10070_1  85 ATIVVADLTTAEGVERVVKAALAAAGDagLFALVNNAGLCLPGNVDWLPPDAYERSMALNFHAPVKLTYALLPALKSTR--GRVVNVTSVDGVVALPSTAAYSASKHALEAFSDVLRAEMLPWDVNVVVVEPGTMRTPLAE 223
                  45567999999**************97335679*****************************************98777..9********************************************************987 PP

>> TIGR03206  benzo_BadH: 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.1   0.7   4.3e-17   1.3e-14       6     194 ..      43     226 ..      38     235 .. 0.85

  Alignments for each domain:
  == domain 1    score: 52.1 bits;  conditional E-value: 4.3e-17
    TIGR03206   6 aivtgggggiggaicrrfaeegakvavldlnaeaaekvaaairekggkaeavavditdrasvdaavaaaeealgpvdv..lvnnagwdvlkpflktekaewerliainltgalymhhavlkgmverkagrivniasdaarvgssgeavyaackgglvafsktlarelarhgitvnvvcpgptdtalledvk 194
                  +++tg   g g  + ++  + g kv        a+ + a+a + +  +a  v +d+t  + v+  v aa  a g + +  lvnnag    ++     +  +er +a+n+   + + +a+l+ + +  +gr+vn++s  + v     a y+a k  l afs  l  e+   ++ v vv pg   t+l e ++
  MMETSP1137-20121227|10070_1  43 ILLTGCDTGFGRHVAQQALDAGFKVVA------ACYTEAGAATFASTTATIVVADLTTAEGVERVVKAALAAAGDAGLfaLVNNAGLCLPGNVDWLPPDAYERSMALNFHAPVKLTYALLPAL-KSTRGRVVNVTSVDGVVALPSTAAYSASKHALEAFSDVLRAEMLPWDVNVVVVEPGTMRTPLAEAFA 226
                  556666666666666666666655543......344445555556678999******************999998875449****************************************97.5678*********************************************************988765 PP

>> TIGR02632  RhaD_aldol-ADH: rhamnulose-1-phosphate aldolase/alcohol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.8   0.7   5.5e-13   1.6e-10     414     599 ..      40     217 ..      33     255 .. 0.85

  Alignments for each domain:
  == domain 1    score: 37.8 bits;  conditional E-value: 5.5e-13
    TIGR02632 414 rrvalvtGgasGiGrevarrlvdeGahvvladldaeaaeavaaelvdkfGadkavalkldvtdeeavkaafaevalayG..GvdivvnnaGiavskpleeteleeWdlnldilatGyflvareaarllrkqglggnlvfiasknavvakknalaysaakaaeahlvrllaielaelgirvntvaPdav 599
                  +r +l+tG  +G Gr va++  d G  vv a   ++ a++        f + +a  +++d+t  e v+ +++++  a G  G+ ++vnnaG+    +++    + ++++++++      +    a l   +++ g +v ++s+++vva +++ aysa+k a      +l +e+ +  + v  v+P ++
  MMETSP1137-20121227|10070_1  40 GRCILLTGCDTGFGRHVAQQALDAGFKVVAACYTEAGAAT--------FASTTATIVVADLTTAEGVERVVKAALAAAGdaGLFALVNNAGLCLPGNVDWLPPDAYERSMALNFHAPVKL--TYALLPALKSTRGRVVNVTSVDGVVALPSTAAYSASKHALEAFSDVLRAEMLPWDVNVVVVEPGTM 217
                  5889************************998776555543........34566788999****9999999999888877669999***********************999998766444..445555567899***************************999*******************99876 PP

>> TIGR01831  fabG_rel: putative 3-oxoacyl-(acyl-carrier-protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.2   0.1   1.2e-11   3.4e-09       1     193 [.      43     228 ..      43     247 .. 0.83

  Alignments for each domain:
  == domain 1    score: 34.2 bits;  conditional E-value: 1.2e-11
    TIGR01831   1 vlvtgasrgigraialklaadgfeiavhyrsdradaeesvaairaqggnarllkfdvadrvavrevleadiaehg..ayygvvlnagiardaafpalseedwdavietnldgfynvihplvmpmirarkggriitlasvsgvmgnrgqvnysaakagligatkalavelakrkitvnciapglidtemvaevekd 193
                  +l+tg+  g gr +a++   +gf++   + +++ +a    a+     ++a ++  d++  + v  v++a +a+ g    + +v nag+        l  + ++  +  n+ +   +    ++p ++  + gr++ ++sv gv+       ysa+k  l   +  l  e+    + v  + pg + t + +   + 
  MMETSP1137-20121227|10070_1  43 ILLTGCDTGFGRHVAQQALDAGFKVVAACYTEAGAAT--FAS-----TTATIVVADLTTAEGVERVVKAALAAAGdaGLFALVNNAGLCLPGNVDWLPPDAYERSMALNFHAPVKLTY-ALLPALKSTR-GRVVNVTSVDGVVALPSTAAYSASKHALEAFSDVLRAEMLPWDVNVVVVEPGTMRTPLAEAFADG 228
                  689***********************99998876654..333.....455666667777777777777777766632589***************************99999887665.5678888765.7*****************************************************99988776655 PP

>> TIGR01500  sepiapter_red: sepiapterin reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.0   0.0   1.2e-10   3.4e-08       3     200 ..      43     221 ..      41     227 .. 0.84

  Alignments for each domain:
  == domain 1    score: 31.0 bits;  conditional E-value: 1.2e-10
    TIGR01500   3 llvtGasrGfGrelaqelakrlkaegsvlvLlaRndeaLkeskaeieaevsalsvdlvsldleaakdvedllkaleesikkeeyerillinnaGtlgdvskrekelsDsknvqkyydsnvtslvvltsellkklkelqglektvvnlssLcaikpfkswalYCaskaaRdmffqvLaleek.edvkvLnYapGvlDtdm 200
                  +l+tG   GfGr++aq+        g ++v      ea   + a+ +a         v +dl +a++ve ++ka ++ ++  ++    l+nnaG       ++++    +  ++  ++n  + v lt  ll +lk   +    vvn+ s+  + +++s a Y ask a + f  vL  e    dv v+   pG + t +
  MMETSP1137-20121227|10070_1  43 ILLTGCDTGFGRHVAQQALD----AGFKVVAACYT-EAGAATFASTTA-------TIVVADLTTAEGVERVVKAALAAAGDAGL--FALVNNAGLCL---PGNVDWLPPDAYERSMALNFHAPVKLTYALLPALK---STRGRVVNVTSVDGVVALPSTAAYSASKHALEAFSDVLRAEMLpWDVNVVVVEPGTMRTPL 221
                  699*************9777....67777755443.333333333333.......44568***************999999988..5789****754...355667788999***********************...88899************************************99889999999999998865 PP

>> TIGR03325  BphB_TodD: cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.2   0.4   1.5e-09   4.5e-07       5     191 ..      40     221 ..      38     228 .. 0.83

  Alignments for each domain:
  == domain 1    score: 27.2 bits;  conditional E-value: 1.5e-09
    TIGR03325   5 devvlvtggasglgralvdrfvaegarvavldksaagleeleaahgdkvvgvegdvrllddhkeavarcveafgk..ldtlipnagiwdystalvdipddrideafdevfeinvkgyllavkaalpalvasrgsviftvsnagfypngggalytaakhavvglvkelayelapy.vrvngvapgglstdl 191
                  ++ +l+tg  +g+gr + ++ +  g +v     ++ag   + ++ +  vv+   d  + +  ++ v+  ++a g   l +l++nag+     ++  +p d     ++  + +n ++ ++   a lpal ++rg v+   s  g  +    a y+a+kha+  +   l  e+ p  v v  v pg + t l
  MMETSP1137-20121227|10070_1  40 GRCILLTGCDTGFGRHVAQQALDAGFKVVAACYTEAGAATFASTTATIVVA---DLTTAEGVERVVKAALAAAGDagLFALVNNAGLCL-PGNVDWLPPDA----YERSMALNFHAPVKLTYALLPALKSTRGRVVNVTSVDGVVALPSTAAYSASKHALEAFSDVLRAEMLPWdVNVVVVEPGTMRTPL 221
                  56799************************99999***99999988777665...777777777777777777775236789*****963.33344467765....555566666666777889***********************************************999549999*******9877 PP

>> TIGR02685  pter_reduc_Leis: pteridine reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   0.1     0.016       4.6       5      92 ..      44     121 ..      41     138 .. 0.70
   2 !    9.1   0.0   0.00048      0.14     147     211 ..     158     222 ..     145     246 .. 0.80

  Alignments for each domain:
  == domain 1    score: 4.1 bits;  conditional E-value: 0.016
    TIGR02685   5 lvtGaakriGrsiavklhqeGyrvvlhyrrsaeaasslaaelnaeransavvvkadlsnsasllssceeiidacfrafGrcdv..lvnna 92 
                  l+tG+   +Gr +a++  + G++vv      a+aa+ +a       + +a +v adl+ ++      e +++a+  a G   +  lvnna
  MMETSP1137-20121227|10070_1  44 LLTGCDTGFGRHVAQQALDAGFKVVAACYTEAGAAT-FA-------STTATIVVADLTTAE----GVERVVKAALAAAGDAGLfaLVNNA 121
                  7899999*****************988776666553.33.......456667777777654....3455666666666655432266666 PP

  == domain 2    score: 9.1 bits;  conditional E-value: 0.00048
    TIGR02685 147 elrssnlsivnlvdamtdqpllgfslytmakealeGltrsaalelaslqirvngvapGlsllpda 211
                  +l+s+   +vn++       l++ + y+ +k+ale ++     e+ + ++ v  v pG    p a
  MMETSP1137-20121227|10070_1 158 ALKSTRGRVVNVTSVDGVVALPSTAAYSASKHALEAFSDVLRAEMLPWDVNVVVVEPGTMRTPLA 222
                  56677778888854444445556679********************************8776654 PP

>> TIGR00068  glyox_I: lactoylglutathione lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.4   0.0   0.00048      0.14      19     142 ..     339     457 ..     335     461 .. 0.78
   2 ?   -0.1   0.0      0.41   1.2e+02      90     111 ..     565     586 ..     548     609 .. 0.83

  Alignments for each domain:
  == domain 1    score: 9.4 bits;  conditional E-value: 0.00048
    TIGR00068  19 lhtmlrvgdldksldfytevlGmkllrkkdfpeekfslaflgyedessaavieL.tynwgtekydlGn....gfGhiaiavddvykacervkakGgkvvrepgpvkggtkviafvkDPDGykiellekk 142
                   h+ + v  l++sl fy + lGm+      fp+      fl+ + +     + L   n  +++   G     g   + i   dv + + r+ ++G + +      ++ + +ia   DPD y + l+e k
  MMETSP1137-20121227|10070_1 339 SHVTVDVSSLKASLPFYEK-LGMQ-----AFPSSVAGAQFLAAGATGRRQPLLLlRENATMTE--RGPtwlaGMPRLCIYSTDVDADVRRLAEAGLEPMAPV--AEDAMAKIAAYYDPDRYVVYLIEFK 457
                  6888889999999999976.8997.....4777788888999998877665554045544443..33334558999*******************9977655..78999**************999866 PP

  == domain 2    score: -0.1 bits;  conditional E-value: 0.41
    TIGR00068  90 iaiavddvykacervkakGgkv 111
                  ++iav+dv +a ++  a+G +v
  MMETSP1137-20121227|10070_1 565 VTIAVNDVNAALDAAAAAGMRV 586
                  7899*******99999999876 PP

>> TIGR03466  HpnA: hopanoid-associated sugar epimerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   0.2   0.00086      0.25       2      63 ..      42     103 ..      41     119 .. 0.89
   2 ?    0.8   0.0      0.13        39     273     303 ..     423     453 ..     384     470 .. 0.67

  Alignments for each domain:
  == domain 1    score: 8.0 bits;  conditional E-value: 0.00086
    TIGR03466   2 kvlvtGatGFvGsavvrllleeGeevrvlvrktsdrrnleeldvEiveGdlkdeaslkkalk 63 
                  + l+tG     G +v+++ l++G +v +   +++ ++ +++  + iv+ dl+ ++ +++ +k
  MMETSP1137-20121227|10070_1  42 CILLTGCDTGFGRHVAQQALDAGFKVVAACYTEAGAATFASTTATIVVADLTTAEGVERVVK 103
                  57999986666*****************************************9999888776 PP

  == domain 2    score: 0.8 bits;  conditional E-value: 0.13
    TIGR03466 273 ltgkePlvtvdgvrmakkkmffssakAereL 303
                    g eP+++v +  mak   +++ ++ +  L
  MMETSP1137-20121227|10070_1 423 EAGLEPMAPVAEDAMAKIAAYYDPDRYVVYL 453
                  4567******************998866655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (621 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       199  (0.0485129); expected 82.0 (0.02)
Passed bias filter:                      128  (0.0312043); expected 82.0 (0.02)
Passed Vit filter:                        33  (0.00804486); expected 4.1 (0.001)
Passed Fwd filter:                        14  (0.00341297); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.56u 0.19s 00:00:00.75 Elapsed: 00:00:00.56
# Mc/sec: 1437.99
//
Query:       MMETSP1137-20121227|10072_1  [L=813]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00025   17.1   0.0    0.00037   16.5   0.0    1.1  1  TIGR02100 glgX_debranch: glycogen debranching enzyme GlgX


Domain annotation for each model (and alignments):
>> TIGR02100  glgX_debranch: glycogen debranching enzyme GlgX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0   9.1e-08   0.00037     244     343 ..     357     451 ..     347     461 .. 0.77

  Alignments for each domain:
  == domain 1    score: 16.5 bits;  conditional E-value: 9.1e-08
    TIGR02100 244 vaefkemvkalhdaGievilDvvynhtaegnelgptlslrGiDnasyyrlkeddkrryiddtGtGntlnlshprvlqlvldsLrywveemhvDGFRFDLa 343
                  + + + mv+ lh+ G  v + ++      ++         G++   +   +++++     + G G  ln+s+++   +  + Lr  +ee+++DGF+FD +
  MMETSP1137-20121227|10072_1 357 FPDPRAMVDSLHEKGFRVTVWLIPFADPHSEA-----YKEGVEKGVWMLGHDGEPEIVKWWQGEGAILNVSDDAACDWFEERLRKMMEETGIDGFKFDAG 451
                  56667888888888888877666432222222.....235676666667777888888889*************************************76 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (813 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        68  (0.0165773); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.15s 00:00:00.64 Elapsed: 00:00:00.59
# Mc/sec: 1818.77
//
Query:       MMETSP1137-20121227|10073_1  [L=166]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (166 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        57  (0.0138957); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.15s 00:00:00.32 Elapsed: 00:00:00.37
# Mc/sec: 592.17
//
Query:       MMETSP1137-20121227|10074_1  [L=228]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.6e-30  102.2   0.1    1.5e-29  101.0   0.0    1.5  1  TIGR02396 diverge_rpsU: rpsU-divergently transcribed protein


Domain annotation for each model (and alignments):
>> TIGR02396  diverge_rpsU: rpsU-divergently transcribed protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  101.0   0.0   3.7e-33   1.5e-29       2     158 ..      66     228 .]      65     228 .] 0.94

  Alignments for each domain:
  == domain 1    score: 101.0 bits;  conditional E-value: 3.7e-33
    TIGR02396   2 aklldallelvpflGwteeallkaaeelglsdilakllpeegladliefferkldaallealkake.lledlkvrekielavrlrlkmvkpiiehlkqalallakpknlaeslrlllelvDeIwylagDkSs......DfnwYtKRalLsavysstelfmiqDk 158
                  ++llda+l+ vp++Gwt  al++aa  +gls++ +++lp++++ +l+ +f+ ++da+l ++l +k+ ++e l+v+++++la ++rl m +p++  ++qalal a+p+n+ esl+ + +l++ ++ + g  ++        +   K a+L+avy ++el+m++Dk
  MMETSP1137-20121227|10074_1  66 VRLLDAALNKVPEHGWTVGALSAAAVSIGLSPAAHGMLPRGPI-ELVRHFSSACDAKLQAELVSKAdEFESLEVKNRLVLAMQTRLRMLEPYVATWPQALALKAQPTNVSESLSDAHALASLLLDACGAGARapiapaAIDAHLKCASLAAVYGAAELYMLTDK 228
                  79****************************************9.8****************9999889********************************************************9999887622222257999********************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (228 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        92  (0.0224281); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.25u 0.17s 00:00:00.42 Elapsed: 00:00:00.31
# Mc/sec: 970.76
//
Query:       MMETSP1137-20121227|10075_1  [L=115]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (115 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        87  (0.0212092); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.16s 00:00:00.31 Elapsed: 00:00:00.25
# Mc/sec: 607.15
//
Query:       MMETSP1137-20121227|10076_1  [L=160]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (160 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        59  (0.0143832); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.11s 00:00:00.27 Elapsed: 00:00:00.43
# Mc/sec: 491.12
//
Query:       MMETSP1137-20121227|10078_1  [L=540]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.5e-16   56.8   0.9    2.7e-15   53.9   0.7    2.1  1  TIGR01733 AA-adenyl-dom: amino acid adenylation domain
    5.5e-15   53.0   0.1    9.8e-09   32.4   0.0    2.7  2  TIGR01923 menE: O-succinylbenzoate-CoA ligase
    6.5e-11   39.2   0.1    0.00028   17.3   0.0    2.9  3  TIGR03098 ligase_PEP_1: acyl-CoA ligase (AMP-forming), exosortase A-associated
    2.5e-10   37.2   1.6    6.4e-05   19.3   0.0    2.8  3  TIGR03205 pimA: dicarboxylate--CoA ligase PimA
    2.9e-10   37.1   0.3    1.3e-05   21.7   0.0    2.4  3  TIGR01734 D-ala-DACP-lig: D-alanine--poly(phosphoribitol) ligase, subunit 1
    1.3e-09   35.2   0.3    0.00013   18.7   0.0    2.8  3  TIGR03208 cyc_hxne_CoA_lg: cyclohexanecarboxylate-CoA ligase
    4.5e-06   23.0   0.0    7.5e-06   22.3   0.0    1.3  1  TIGR02275 DHB_AMP_lig: (2,3-dihydroxybenzoyl)adenylate synthase
    4.5e-06   23.5   0.1      0.033   10.7   0.0    3.1  3  TIGR02262 benz_CoA_lig: benzoate-CoA ligase family
    2.3e-05   20.7   0.1     0.0026   13.9   0.0    2.8  3  TIGR02188 Ac_CoA_lig_AcsA: acetate--CoA ligase
    6.5e-05   18.3   0.2      0.048    8.8   0.1    2.0  2  TIGR03443 alpha_am_amid: L-aminoadipate-semialdehyde dehydrogenase
     0.0032   14.0   0.0     0.0051   13.3   0.0    1.2  1  TIGR02316 propion_prpE: propionate--CoA ligase


Domain annotation for each model (and alignments):
>> TIGR01733  AA-adenyl-dom: amino acid adenylation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.9   0.7   7.3e-18   2.7e-15       6     346 ..      29     392 ..      24     410 .. 0.75

  Alignments for each domain:
  == domain 1    score: 53.9 bits;  conditional E-value: 7.3e-18
    TIGR01733   6 deranrlAraLkeaggvrpgdrVavll.ersvelvvailavlkaGaayvpldpey.PaeRlaailedakakllltdeelaeelaevaleailleeleekaaedasaeeaaeakskpddlayviyTSGStGkPKgVlvehrslvnllaslarryelseedrv..lqfsslaFDlsveeiflallaGatlvvvpeeeekdeaellaallaerkvtvlsltpsllellaeea........seelkslrlvllgGealtaelverlraraeevrli..nlYGpTEttvvvtveevsadeesee.e...............pvpiGrpla.nvrlyvldea.......lrpvpvgvvGELyigGagvarGYlnrpeltaerFve 346
                   + a+r Ar L++ag +r gd+   ++ + ++  vv  la + aG + v ++ ++  +eR+ + +++++ kl+l+d+++  ++         ++  +++aa+++  ++    + +pd +  vi+TSG+tG+PKgV+++ +s +   a ++++ + ++++++  + + +l++  s+  + +a+   +t + + ++ + +  +lla++    +v ++ +  ++++++ +++        s++ + l  +++gG     + v + + +++ + l+    +G TEt++ v+ + +  +e+++                   + iGrp +  +++ ++++        + ++++g++G L+ +G  +++GY+ +pe ta+   +
  MMETSP1137-20121227|10078_1  29 WTLAQRAARVLRDAG-LRFGDCQTHYFsDNTLGDVVFRLAAVMAGTVPVTINWQAdTPERVLHKVTVTGSKLVLMDKDTPRRV--------SFR--ARAAAAAEFCRD---LALTPDATRIVIFTSGTTGNPKGVELSYSSYACNRATFESFLQAGDDKSLvpVVVNPLHHTNSTALVDWAMRKPGTHLHLVQRYSTQYWALLARAGTGLAVGATVSDEAMVDAIRARKqvivaplvSRHFDFLDGLITGGGLPLDAGVLKAALSGT-ILLLptVRFGSTETCLQVMGTPLYLSESERLdAfkagwdhvfggqpqtGYYIGRPHPpYTECKIVKSTergqagyMVECAEGEPGQLVTRGGNIMKGYVANPEATAKAIHD 392
                  5679999*****865.99999866555167799*******************8652789***************986544333........333..222222322333...333478899************************9999999887754444312467899999999998888877666665555555547779999999999***************99989987654333558999999998877777777565554.45541156********99987665555444333568999999999887788***986268999999876666666779****************************98654 PP

>> TIGR01923  menE: O-succinylbenzoate-CoA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.4   0.0   2.6e-11   9.8e-09       8     188 ..      31     209 ..      26     314 .. 0.80
   2 !   17.4   0.0   8.9e-07   0.00033     297     371 ..     364     445 ..     345     459 .. 0.83

  Alignments for each domain:
  == domain 1    score: 32.4 bits;  conditional E-value: 2.6e-11
    TIGR01923   8 eaarlAkalkaqsvrkgdvva.llaenslelvllllallllgveiallntrLte.kelttqlkelkvellltdslleekedlqaisldeleaeaeaeevslsasfsldkiatlifTSgstGkpKavvqtfrnhyasavgsaeklgftesdnWL..lsLPlyHvsGlsilfral.legatlkivdkf 188
                   a+r A+ l+  ++r gd  + ++++n l  v++ la++ +g + + +n +  + +++ + +  + ++l+l d+   +++ + a +++  e+     ++     ++ d++  +ifTSg+tG+pK+v  +++ +  +  +    l++ ++ +    ++ Pl+H    +++  a+   g+ l++v++ 
  MMETSP1137-20121227|10078_1  31 LAQRAARVLRDAGLRFGDCQThYFSDNTLGDVVFRLAAVMAGTVPVTINWQADTpERVLHKVTVTGSKLVLMDKDTPRRVSFRARAAAAAEFCR---DLA----LTPDATRIVIFTSGTTGNPKGVELSYSSYACNRATFESFLQAGDDKSLVpvVVNPLHHTNSTALVDWAMrKPGTHLHLVQRY 209
                  57899************987637799***********************997551566788999999******999998888888877776666...344....679***********************99888877777777777666543326779999887776643330346666666665 PP

  == domain 2    score: 17.4 bits;  conditional E-value: 8.9e-07
    TIGR01923 297 ghgeilvkganlmkgYlek.gelteaveeqGwl.ktgDlgeldgegf.....llvldRrddliISGGENiypeeiEkvlksl 371
                  + g+++ +g n+mkgY  + +   +a+++ Gw+ + gD++ + ++g+      + l R + l+I GG N   e+i + l  +
  MMETSP1137-20121227|10078_1 364 EPGQLVTRGGNIMKGYVANpEATAKAIHDGGWYvNLGDVAFWLKNGKdggrdFYWLSRDSALLIRGGANYSYEQINTELAAF 445
                  66999************9956677889999996488******77764333449******************9**99877665 PP

>> TIGR03098  ligase_PEP_1: acyl-CoA ligase (AMP-forming), exosortase A-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.0     0.053        20      32      81 ..      29      79 ..      14      82 .. 0.82
   2 !   16.6   0.0   1.2e-06   0.00044     123     208 ..      91     176 ..      80     187 .. 0.68
   3 !   17.3   0.0   7.4e-07   0.00028     350     452 ..     359     461 ..     337     527 .. 0.72

  Alignments for each domain:
  == domain 1    score: 1.3 bits;  conditional E-value: 0.053
    TIGR03098 32 seevkalasglkalglkrgeRvaiyl.ekrletvlalfaaslaggvfvpin 81
                    +++ a++l+  gl+ g+  + y  +  l  v+  +aa++ag+v v in
  MMETSP1137-20121227|10078_1 29 WTLAQRAARVLRDAGLRFGDCQTHYFsDNTLGDVVFRLAAVMAGTVPVTIN 79
                 5567889999**********9888862566789*****************9 PP

  == domain 2    score: 16.6 bits;  conditional E-value: 1.2e-06
    TIGR03098 123 tlilvdepekasekkagaevlsweklkaleeaa.akvdvidddlaailYtsGstGrPkgvvlshrnlvaGaksvaqyLelredDrll 208
                  ++ +++ +   + k      +s+++ +a+  +  +    ++d    +++tsG tG+Pkgv ls +       +  ++L+  +d  l+
  MMETSP1137-20121227|10078_1  91 KVTVTGSKLVLMDKD-TPRRVSFRARAAAAAEFcRDLALTPDATRIVIFTSGTTGNPKGVELSYSSYACNRATFESFLQAGDDKSLV 176
                  555555544333333.345555555544444443888899999999*****************998877777777777766665555 PP

  == domain 3    score: 17.3 bits;  conditional E-value: 7.4e-07
    TIGR03098 350 ecapeeeGelvhrGalvakGYWndpektaerfrplpkrqselkltelavfsGDlvrrDeeGflyfvgRrdemiktsGyRvsPtevee.....vllatglvaeavvlgv 452
                  eca +e+G lv rG  + kGY  +pe+ta+  ++        +l ++a +      +D   ++y+++R  +++   G   s   ++      v+ + gl +eav+++v
  MMETSP1137-20121227|10078_1 359 ECAEGEPGQLVTRGGNIMKGYVANPEATAKAIHDGGW---YVNLGDVAFWLK--NGKDGGRDFYWLSRDSALLIRGGANYSYEQINTelaafVARQYGLPEEAVAVAV 461
                  8****************************99887665...677888888863..346666678888888888777777766655543111123345566666666655 PP

>> TIGR03205  pimA: dicarboxylate--CoA ligase PimA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.0     0.082        31      48     123 ..      24     101 ..      10     106 .. 0.81
   2 !   19.3   0.0   1.7e-07   6.4e-05     166     275 ..     105     211 ..     102     309 .. 0.79
   3 !   15.0   0.1   3.7e-06    0.0014     390     459 ..     362     438 ..     314     464 .. 0.82

  Alignments for each domain:
  == domain 1    score: 0.6 bits;  conditional E-value: 0.082
    TIGR03205  48 tytelealaetaaaallragyg.kdasvalylgntpdhpinffgalkagarvvhls.pldgeralshklsdsgarlli 123
                  +  e+ +la++aa  l  ag    d+    +  nt    +  + a+ ag+  v +    d    + hk++ +g++l++
  MMETSP1137-20121227|10078_1  24 SRGEFWTLAQRAARVLRDAGLRfGDCQTHYFSDNTLGDVVFRLAAVMAGTVPVTINwQADTPERVLHKVTVTGSKLVL 101
                  5556778999999999999986368999999999999999999******98777762578888888*******99876 PP

  == domain 2    score: 19.3 bits;  conditional E-value: 1.7e-07
    TIGR03205 166 adprivtyadfvkgaakpaewpavkaddvallqytggttglpkgamlthgnltsavsiydvwgkrsraergdvervicvlplfhiyaltvillrslkrgdlislhqrfdv 275
                  + pr v+++     aa+  +  a+++d   ++ +t gttg pkg  l+++  +   + ++ + +   a  ++    ++v pl h  + +++     k g  + l qr+  
  MMETSP1137-20121227|10078_1 105 DTPRRVSFRARAAAAAEFCRDLALTPDATRIVIFTSGTTGNPKGVELSYSSYACNRATFESFLQ---AGDDKSLVPVVVNPLHHTNSTALVDWAMRKPGTHLHLVQRYST 211
                  5699999999999999999999***********************************9999876...3333333345689*****9999999999999999999999975 PP

  == domain 3    score: 15.0 bits;  conditional E-value: 3.7e-06
    TIGR03205 390 pgevgelrirgpnvtrgywnraeesaeafvgdrflt..gdigyvdrdg.....yfflvdrkkdmiisggfnv.ypqmi 459
                   ge g+l  rg n+ +gy  ++e +a+a+ ++ +    gd+ +  ++g      f+ + r   ++i gg n  y q i
  MMETSP1137-20121227|10078_1 362 EGEPGQLVTRGGNIMKGYVANPEATAKAIHDGGWYVnlGDVAFWLKNGkdggrDFYWLSRDSALLIRGGANYsYEQ-I 438
                  6999*************************9987653349*998655442224459999***********9962444.3 PP

>> TIGR01734  D-ala-DACP-lig: D-alanine--poly(phosphoribitol) ligase, subunit 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.7   0.0   3.6e-08   1.3e-05     136     166 ..     125     155 ..      53     175 .. 0.85
   2 !   13.1   0.0   1.5e-05    0.0055     338     384 ..     360     404 ..     342     417 .. 0.83
   3 ?   -3.9   0.0       2.1   7.9e+02     288     310 ..     446     470 ..     443     484 .. 0.72

  Alignments for each domain:
  == domain 1    score: 21.7 bits;  conditional E-value: 3.6e-08
    TIGR01734 136 ekavkeddnyyiiytsGstGkPkGvqishdn 166
                  + a+  d +  +i+tsG+tG+PkGv++s+ +
  MMETSP1137-20121227|10078_1 125 DLALTPDATRIVIFTSGTTGNPKGVELSYSS 155
                  55667788999****************9976 PP

  == domain 2    score: 13.1 bits;  conditional E-value: 1.5e-05
    TIGR01734 338 lsegekGeivivGdsvskGylnnpekteeaffeaegkrayrtGDagt 384
                   +ege G +v  G  + kGy+ npe t++a +  +g +  + GD+++
  MMETSP1137-20121227|10078_1 360 CAEGEPGQLVTRGGNIMKGYVANPEATAKAIH--DGGWYVNLGDVAF 404
                  5799*************************974..5666667777766 PP

  == domain 3    score: -3.9 bits;  conditional E-value: 2.1
    TIGR01734 288 iyntyG.Ptea.tvavtsvkitkei 310
                  +   yG P ea +vav +++it+e 
  MMETSP1137-20121227|10078_1 446 VARQYGlPEEAvAVAVVGLRITSEX 470
                  5667885666634677888999885 PP

>> TIGR03208  cyc_hxne_CoA_lg: cyclohexanecarboxylate-CoA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0      0.29   1.1e+02     269     299 ..      27      58 ..      12      74 .. 0.79
   2 !   18.7   0.0   3.4e-07   0.00013     180     236 ..     116     172 ..      79     193 .. 0.77
   3 !   13.2   0.0   1.5e-05    0.0057     384     519 ..     359     515 ..     328     527 .. 0.60

  Alignments for each domain:
  == domain 1    score: -0.9 bits;  conditional E-value: 0.29
    TIGR03208 269 diwn.aakaaeliretgvtftmastafltdla 299
                  + w  a +aa+++r+ g+ f  + t +++d +
  MMETSP1137-20121227|10078_1  27 EFWTlAQRAARVLRDAGLRFGDCQTHYFSDNT 58 
                  66763567999999999999999999998854 PP

  == domain 2    score: 18.7 bits;  conditional E-value: 3.4e-07
    TIGR03208 180 dpdaaailrgdrlspddvtqliytsgttgepkgvmhtantllsnilayaerlelgeg 236
                     aa   r  +l+pd    +i+tsgttg+pkgv  +  +  +n  ++   l+ g+ 
  MMETSP1137-20121227|10078_1 116 AAAAAEFCRDLALTPDATRIVIFTSGTTGNPKGVELSYSSYACNRATFESFLQAGDD 172
                  4556667788899*********************99988888888888777776654 PP

  == domain 3    score: 13.2 bits;  conditional E-value: 1.5e-05
    TIGR03208 384 klsagevgrllvraasnfggylkrphln..avdaegwf.dtgdlafldaegy.....iriagrskdviirggenipvveieall.......ykhpa.vaqvaivaypderlgeracav.vvlktgasldfaa.l.veflkaqk..valqyiperlvv 519
                  + ++ge g+l+ r+   + gy+  p+    a+   gw+ + gd+af   +g           r+  ++irgg n    +i++ l       y  p     va+v+       e  c v + l+t  +  ++a +   flk  k  v++   p+r+ v
  MMETSP1137-20121227|10078_1 359 ECAEGEPGQLVTRGGNIMKGYVANPEATakAIHDGGWYvNLGDVAFWLKNGKdggrdFYWLSRDSALLIRGGANYSYEQINTELaafvarqYGLPEeAVAVAVVGLRITSEXEDECCVtIELNTPEAKAKSAeIeSSFLKHAKkgVSKGAKPDRVRV 515
                  4568999******************9761156778998578****9766653221124456788889*******98777766542222222333431335777777665555555444144444444333330313466654323556666666655 PP

>> TIGR02275  DHB_AMP_lig: (2,3-dihydroxybenzoyl)adenylate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.3   0.0     2e-08   7.5e-06     354     508 ..     334     515 ..     331     527 .. 0.63

  Alignments for each domain:
  == domain 1    score: 22.3 bits;  conditional E-value: 2e-08
    TIGR02275 354 GkPispddevrvvdeege.......pvaeGeaGrlltrGPytirGyykaeehnakafdaeGfyit.GdlvkltkeG.....yivveGrakdqinrGGekiaaeeienlllkh........pavidaalvsledellGeks.cafivvkded..lkavqlr.rflr..eaGlaeyklPdrvel 508
                  G+P  p+ e ++v   ++       + aeGe G+l+trG   ++Gy  ++e  aka ++ G+y+  Gd++   k+G           r    + rGG   + e+i+  l +         ++ +  a+v l+     e   c+ i ++ ++   k++++   fl+  ++G+++   Pdrv++
  MMETSP1137-20121227|10078_1 334 GRPHPPYTECKIVKSTERgqagymvECAEGEPGQLVTRGGNIMKGYVANPEATAKAIHDGGWYVNlGDVAFWLKNGkdggrDFYWLSRDSALLIRGGANYSYEQINTELAAFvarqyglpEEAVAVAVVGLRITSEXEDEcCVTIELNTPEakAKSAEIEsSFLKhaKKGVSKGAKPDRVRV 515
                  66667777777766544311222224589**********************************86599976555541113324556777888899999999999988886651111122122334456666655555544044454555552344555542577622468888888888875 PP

>> TIGR02262  benz_CoA_lig: benzoate-CoA ligase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.9   0.0    0.0027      0.99      30      87 ..      22      80 ..      15      90 .. 0.88
   2 !   10.7   0.0   8.8e-05     0.033     128     186 ..      98     156 ..      86     168 .. 0.82
   3 ?    3.1   0.0     0.018       6.6     350     386 ..     359     396 ..     332     428 .. 0.80

  Alignments for each domain:
  == domain 1    score: 5.9 bits;  conditional E-value: 0.0027
    TIGR02262 30 slsygeleaevrrvaaalrrlGvkreervllvlldtvdfpivf.lGairaGivpvalnt 87
                 +ls ge+ + ++r+a +lr  G++  +     + d +   +vf l a+ aG vpv++n 
  MMETSP1137-20121227|10078_1 22 TLSRGEFWTLAQRAARVLRDAGLRFGDCQTHYFSDNTLGDVVFrLAAVMAGTVPVTINW 80
                 567788888899******************99*9999999998789***********95 PP

  == domain 2    score: 10.7 bits;  conditional E-value: 8.8e-05
    TIGR02262 128 klvvvgakpagekqlaellateseqekaaatkaddpafwlyssGstGapkGvvhvhsnl 186
                  klv++ ++ + ++++ +  a+ +e  +  a ++d +   +++sG+tG pkGv   +s+ 
  MMETSP1137-20121227|10078_1  98 KLVLMDKDTPRRVSFRARAAAAAEFCRDLALTPDATRIVIFTSGTTGNPKGVELSYSSY 156
                  55666666788899999999999*****************************8877765 PP

  == domain 3    score: 3.1 bits;  conditional E-value: 0.018
    TIGR02262 350 dvadgevGellvsgpssaagywnnreksrat.feGewt 386
                  + a+ge+G+l+  g+   +gy  n+e ++++   G+w 
  MMETSP1137-20121227|10078_1 359 ECAEGEPGQLVTRGGNIMKGYVANPEATAKAiHDGGWY 396
                  5699*********************9988761568884 PP

>> TIGR02188  Ac_CoA_lig_AcsA: acetate--CoA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.0     0.017       6.2      87     174 ..      20     109 ..       8     119 .. 0.79
   2 !   13.9   0.0     7e-06    0.0026     218     268 ..     111     160 ..      88     174 .. 0.74
   3 ?    1.1   0.0      0.05        19     531     598 ..     460     528 ..     446     538 .. 0.67

  Alignments for each domain:
  == domain 1    score: 2.7 bits;  conditional E-value: 0.017
    TIGR02188  87 srkltYaellrevcrlanvlkelGvkkgdrvaiYlpm.ipeaviamlacaRiGav.hsvvfaGfsaealaeRivdaeaklvitadeglRg 174
                  s +l+  e+ +   r+a vl+++G++ gd  + Y+   +   v++ la++  G+v  ++ +   ++e + ++++ + +klv+   ++ R+
  MMETSP1137-20121227|10078_1  20 STTLSRGEFWTLAQRAARVLRDAGLRFGDCQTHYFSDnTLGDVVFRLAAVMAGTVpVTINWQADTPERVLHKVTVTGSKLVLMDKDTPRR 109
                  66777888889999****************999997515566777788888888724566888999999999999999999887777776 PP

  == domain 2    score: 13.9 bits;  conditional E-value: 7e-06
    TIGR02188 218 wweelvekeasaecepekldsedplfiLYtsGstGkPkGvlhttgGyllla 268
                   ++   +  a + c+  +l  +    +++tsG+tG+PkGv  + + y+   
  MMETSP1137-20121227|10078_1 111 SFRARAA-AAAEFCRDLALTPDATRIVIFTSGTTGNPKGVELSYSSYACNR 160
                  4444444.467778888888999999**************99999998654 PP

  == domain 3    score: 1.1 bits;  conditional E-value: 0.05
    TIGR02188 531 avvgvp..deikgeaivafvvlkegveedeeelekelkklvrkeigpiakpdkilvveelPktRsGkimR 598
                  avvg     e + e+ v+  + + ++++++ e+e+++ k+ +k +++ akpd+++v++ lP+   G ++ 
  MMETSP1137-20121227|10078_1 460 AVVGLRitSEXEDECCVTIELNTPEAKAKSAEIESSFLKHAKKGVSKGAKPDRVRVAP-LPRNFKGAVLV 528
                  66765411333333333333333444555559*********************99875.88887777765 PP

>> TIGR03443  alpha_am_amid: L-aminoadipate-semialdehyde dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.5   0.0   0.00031      0.12     410     435 ..     126     151 ..      89     159 .. 0.85
   2 !    8.8   0.1   0.00013     0.048     615     678 ..     359     423 ..     346     434 .. 0.89

  Alignments for each domain:
  == domain 1    score: 7.5 bits;  conditional E-value: 0.00031
    TIGR03443 410 vvvGPdsnptlsftsGseGiPkGvkG 435
                  + + Pd++  + ftsG++G PkGv  
  MMETSP1137-20121227|10078_1 126 LALTPDATRIVIFTSGTTGNPKGVEL 151
                  5689********************75 PP

  == domain 2    score: 8.8 bits;  conditional E-value: 0.00013
    TIGR03443 615 lcgvGevGeiyvragGlaegylglpelnaekfvk.nwfvekekwkekdkekkkawrefwlgprdr 678
                   c+ Ge G++  r g + +gy  +pe++a+      w+v+    +   k+ k++ r+f+   rd 
  MMETSP1137-20121227|10078_1 359 ECAEGEPGQLVTRGGNIMKGYVANPEATAKAIHDgGWYVNLGDVAFWLKNGKDGGRDFYWLSRDS 423
                  6***************************98876536********99999999999***9999985 PP

>> TIGR02316  propion_prpE: propionate--CoA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   0.0   1.4e-05    0.0051     198     263 ..      98     162 ..      77     172 .. 0.70

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 1.4e-05
    TIGR02316 198 glaklrrvpgrdvdyaalrrqhedadvevewlesnepsyilytsgttgkpkgvqrdvggyavalaa 263
                  +l  + + + r v + a +    +   ++  l  + + ++++tsgttg pkgv+     ya   a+
  MMETSP1137-20121227|10078_1  98 KLVLMDKDTPRRVSFRARAAAAAEFCRDL-ALTPDATRIVIFTSGTTGNPKGVELSYSSYACNRAT 162
                  55555555556666655444443333333.3556778899********************998776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (540 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       128  (0.0312043); expected 82.0 (0.02)
Passed bias filter:                      119  (0.0290102); expected 82.0 (0.02)
Passed Vit filter:                        20  (0.00487567); expected 4.1 (0.001)
Passed Fwd filter:                        11  (0.00268162); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.67u 0.17s 00:00:00.84 Elapsed: 00:00:01.04
# Mc/sec: 685.33
//
Query:       MMETSP1137-20121227|10079_1  [L=294]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.2e-10   36.2   0.0    5.2e-10   36.2   0.0    2.3  2  TIGR01642 U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor
    2.9e-08   31.0   4.4    2.9e-08   31.0   3.1    3.2  3  TIGR01622 SF-CC1: splicing factor, CC1-like family
      8e-08   30.1   0.0    1.3e-07   29.4   0.0    1.2  1  TIGR01659 sex-lethal: sex-lethal family splicing factor
    8.3e-08   29.3   0.9      3e-07   27.4   0.0    1.9  2  TIGR01648 hnRNP-R-Q: hnRNP-R, Q splicing factor family
    8.4e-08   30.0   1.2    5.3e-07   27.3   0.9    1.9  1  TIGR01661 ELAV_HUD_SF: ELAV/HuD family splicing factor
    2.2e-07   27.9   0.0    2.2e-07   27.9   0.0    2.7  3  TIGR01645 half-pint: poly-U binding splicing factor, half-pint family
    7.3e-07   26.5   0.0    7.3e-07   26.5   0.0    2.1  2  TIGR01628 PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family
  ------ inclusion threshold ------
        0.2    9.3   4.8       0.19    9.3   2.4    1.7  1  TIGR02451 anti_sig_ChrR: anti-sigma factor, putative, ChrR family
          2    4.5   6.9        2.5    4.2   4.8    1.1  1  TIGR01399 hrcV: type III secretion protein, HrcV family


Domain annotation for each model (and alignments):
>> TIGR01642  U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.2   0.0   1.1e-12   5.2e-10     299     355 ..       9      65 ..       3      76 .. 0.94
   2 ?   -8.1   9.7         9   4.1e+03       9     123 ..      97     198 ..      75     240 .. 0.39

  Alignments for each domain:
  == domain 1    score: 36.2 bits;  conditional E-value: 1.1e-12
    TIGR01642 299 lyignLPldlkddqvkeLLesFGdLkaFnliKdlatGlsKGyaFceykdssvtdlAi 355
                  +y+g+LP+dl +  v  +  + G++   n+ +d atG+ +G+aF+ y+d   td+A 
  MMETSP1137-20121227|10079_1   9 VYVGGLPNDLSEGDVTVVFSQVGEVVDINMPRDKATGKQRGFAFIAYEDQRSTDQAA 65 
                  8*****************************************************995 PP

  == domain 2    score: -8.1 bits;  conditional E-value: 9
    TIGR01642   9 rEksrerdrdkskeRsRkRsrdrsrdRdRdrrdrrrsrrkdsRdRdrrrydsrsissleeds.rrrSRdrirrrsrsssseskerrrsrkrsssnekkkddkkrslwdvkppkyea 123
                   Ek+  +++++  eR+ + +rd  ++     +         sR  +  ++++ +  +l+ +  + +  + +++r r  +    +r+ + +   s+e +    k+++wd ++ + e 
  MMETSP1137-20121227|10079_1  97 SEKELAKKKEQIVERNEQLERDATQKAALFAE---------SRGTHL-NEEQVEEMQLRASIlQSKEMSANQKRLRHIEAVLSKRKAQAEADASEEAR----KQKMWDERKKQREV 198
                  34444444444444444444444433333333.........222211.11111112222221122222222222222222222222222222222222....33333333322222 PP

>> TIGR01622  SF-CC1: splicing factor, CC1-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.0   3.1   6.3e-11   2.9e-08     222     277 ..       9      64 ..       3     158 .. 0.91
   2 ?  -10.4  11.4         9   4.1e+03      32     122 ..     104     198 ..      76     215 .. 0.45
   3 ?   -2.2   1.2      0.74   3.4e+02       7      34 ..     245     272 ..     244     286 .. 0.79

  Alignments for each domain:
  == domain 1    score: 31.0 bits;  conditional E-value: 6.3e-11
    TIGR01622 222 LYvGnlhfnitEqeLrqiFepFGeielvqlqkDpetGrskGyGFiqFsdaeeakeA 277
                  +YvG+l  +++E ++  +F   Ge+ ++++++D+ tG+ +G+ Fi ++d   + +A
  MMETSP1137-20121227|10079_1   9 VYVGGLPNDLSEGDVTVVFSQVGEVVDINMPRDKATGKQRGFAFIAYEDQRSTDQA 64 
                  7***********************************************99877666 PP

  == domain 2    score: -10.4 bits;  conditional E-value: 9
    TIGR01622  32 drsrdRersrskerdrdfdr...rdrdrdkyrdrerrsrk.rreserererekerrredevrrkrkeredrrerrekeerlkeelteeeRDartv 122
                  ++++  er+++ erd   +     ++ + +  + + ++ + r ++ +++e   +++r  + +    +r+ + e +  ee  k+++ +e++ +r v
  MMETSP1137-20121227|10079_1 104 KKEQIVERNEQLERDATQKAalfAESRGTHLNEEQVEEMQlRASILQSKEMSANQKRLRHIEAVLSKRKAQAEADASEEARKQKMWDERKKQREV 198
                  22222233333333332222111122222222222222220222222222222223333444444555555555555556666666666665554 PP

  == domain 3    score: -2.2 bits;  conditional E-value: 0.74
    TIGR01622   7 reRsRdssreadrdrerdksrersRdrs 34 
                  ++R+R+ss  a + + ++  +er+R  +
  MMETSP1137-20121227|10079_1 245 SKRKRSSSDAAAKAPASSGPSERKRIGE 272
                  68999998777999***99999999655 PP

>> TIGR01659  sex-lethal: sex-lethal family splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.4   0.0   2.8e-10   1.3e-07     194     250 ..       7      63 ..       2      71 .. 0.88

  Alignments for each domain:
  == domain 1    score: 29.4 bits;  conditional E-value: 2.8e-10
    TIGR01659 194 tnlyvtnlprtitddqldtifgkygsivqknilrdkltgkprgvafvrfnkreeaqe 250
                  + +yv  lp  +++ ++  +f + g++v+ n+ rdk tgk rg af+ ++ +  +++
  MMETSP1137-20121227|10079_1   7 AYVYVGGLPNDLSEGDVTVVFSQVGEVVDINMPRDKATGKQRGFAFIAYEDQRSTDQ 63 
                  568**********************************************87655444 PP

>> TIGR01648  hnRNP-R-Q: hnRNP-R, Q splicing factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.4   0.0   6.7e-10     3e-07      60     115 ..       8      64 ..       4      84 .. 0.91
   2 ?   -0.1   0.6      0.14        64     472     539 ..     168     232 ..      87     271 .. 0.55

  Alignments for each domain:
  == domain 1    score: 27.4 bits;  conditional E-value: 6.7e-10
    TIGR01648  60 evfvGkiPrdlyedelvPlfekvGkiyelrlmmd.ldGknrGyafvtfcnkeeakea 115
                   v+vG +P dl e ++  +f +vG++ ++ +  d   Gk rG+af+ + +++ + +a
  MMETSP1137-20121227|10079_1   8 YVYVGGLPNDLSEGDVTVVFSQVGEVVDINMPRDkATGKQRGFAFIAYEDQRSTDQA 64 
                  59********************************99************998877666 PP

  == domain 2    score: -0.1 bits;  conditional E-value: 0.14
    TIGR01648 472 vsqdpaiaalappkasaavreakstpaeyqlrtlgvrtsagnqriatagakakaydgyaaPdatarva 539
                   s++ a a + +++     r+ k    + ++r +  ++ a  + ++ + a +++ ++ aaP  ta++ 
  MMETSP1137-20121227|10079_1 168 LSKRKAQAEADASEE---ARKQKMWDERKKQREVEEKAAARAHSTSLVDAPQTSLVAPAAPANTAKIK 232
                  333333322222222...23333333333333333333333333344444444444444443333333 PP

>> TIGR01661  ELAV_HUD_SF: ELAV/HuD family splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.3   0.9   1.2e-09   5.3e-07      90     259 ..       7     222 ..       3     236 .. 0.63

  Alignments for each domain:
  == domain 1    score: 27.3 bits;  conditional E-value: 1.2e-09
    TIGR01661  90 anlyvsGlPktmtqkeleslfspfGkiitsrilsdnvtdlskGvGfirfdkreeadraikal............nGttPsgatepitvkfannPsssnskallsdleavlnaqltr.....vprstiltaaaiaplhkaaakfrlsal.............................dflavlakrlqqhavaqqaaaqrasplaadgavaglaag 259
                  a +yv GlP  ++  ++  +fs+ G+++   +  d+ t+  +G  fi ++ +  +d+a  +               + P++  e +t k++++  +++++++    e++ + ++ +      +r t l+  +   ++  a+ ++ +++                             + +++  +r++q+ v ++aaa+ +s   +d+  ++l+a 
  MMETSP1137-20121227|10079_1   7 AYVYVGGLPNDLSEGDVTVVFSQVGEVVDINMPRDKATGKQRGFAFIAYEDQRSTDQAAWTHatvdhcadyheeQKKNPEELPEHVTRKLSEKELAKKKEQIVERNEQLERDATQKaalfaESRGTHLNEEQVEEMQLRASILQSKEMsanqkrlrhieavlskrkaqaeadaseeaRKQKMWDERKKQREVEEKAAARAHSTSLVDAPQTSLVAP 222
                  678999999999999999999999999999999999999999999999977777776654321111111111113456777788888888887766666666554444443333330000033334444444444444444444444488888888888888888888888888775444445677778888888888888888888777777654 PP

>> TIGR01645  half-pint: poly-U binding splicing factor, half-pint family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.9   0.0   4.8e-10   2.2e-07     205     259 ..      11      65 ..       5      77 .. 0.91
   2 ?   -5.4   4.8       5.5   2.5e+03     441     474 ..     165     198 ..      99     219 .. 0.61
   3 ?   -1.9   0.0      0.47   2.2e+02       7      53 ..     247     290 ..     242     293 .. 0.66

  Alignments for each domain:
  == domain 1    score: 27.9 bits;  conditional E-value: 4.8e-10
    TIGR01645 205 vasvhpdlseedlksvfeafGeivkcklaraptlrkhkGfGflefenlqsqseai 259
                  v  + +dlse d+  vf   Ge+v+ ++ r+ +++k +Gf f+ +e+++s+++a 
  MMETSP1137-20121227|10079_1  11 VGGLPNDLSEGDVTVVFSQVGEVVDINMPRDKATGKQRGFAFIAYEDQRSTDQAA 65 
                  666779*********************************************9985 PP

  == domain 2    score: -5.4 bits;  conditional E-value: 5.5
    TIGR01645 441 laaaakakeaaaalllenkkkkkekeeeelqpkl 474
                   a  +k k+ a a ++e+ +k+k  +e++ q+ +
  MMETSP1137-20121227|10079_1 165 EAVLSKRKAQAEADASEEARKQKMWDERKKQREV 198
                  3344566777777777777777765555555432 PP

  == domain 3    score: -1.9 bits;  conditional E-value: 0.47
    TIGR01645   7 rreaasrPavsvavsvlgdkkkpqkqtgevkvgpGkkdaakillGls 53 
                  r+ ++s  a++++ s  + ++k   ++++v v++ +k  +   lG+ 
  MMETSP1137-20121227|10079_1 247 RKRSSSDAAAKAPASSGPSERKR-IGEDSVSVDETNKMREA--LGMK 290
                  56667777777777777755554.48999999987665444..6655 PP

>> TIGR01628  PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.5   0.0   1.6e-09   7.3e-07       3      58 ..       9      64 ..       7      73 .. 0.85
   2 ?   -3.4   9.1       1.8   8.2e+02     400     540 ..     116     269 ..      75     274 .. 0.42

  Alignments for each domain:
  == domain 1    score: 26.5 bits;  conditional E-value: 1.6e-09
    TIGR01628  3 lyvGdLdedvtEavLyelFkevgsvlsvRvCrDsvtrrSLgYaYvNfqnladAerA 58
                 +yvG+L +d+ E  +  +F++vg+v+ + + rD+ t +  g+a++ ++++ + ++A
  MMETSP1137-20121227|10079_1  9 VYVGGLPNDLSEGDVTVVFSQVGEVVDINMPRDKATGKQRGFAFIAYEDQRSTDQA 64
                 79999999999999999999999999999999999999999999999998888776 PP

  == domain 2    score: -3.4 bits;  conditional E-value: 1.8
    TIGR01628 400 rhqaaqqqavvtqavkqqlasqplnfkinqmmlstqnpskpeapnalaqlaqqr....lqaqgrrnlnnrnrnvlgnmnkkqqnaaskanqanvkaqpq.aqsknqmqqvvqdnnlpqkqatksn..........nkestltaaalasaspseqkq 540
                  +++a+q+ a+  ++  + l++++++    +  + ++++++ ++ + l++ +++     +qa+   + + r++++ ++  kkq+++ +ka+  +++     a + + + ++++ n+ ++kqa+  +          +  s  +a+a as  pse+k+
  MMETSP1137-20121227|10079_1 116 ERDATQKAALFAESRGTHLNEEQVEEMQLRASILQSKEMSANQ-KRLRHIEAVLskrkAQAEADASEEARKQKMWDER-KKQREVEEKAAARAHSTSLVdAPQTSLVAPAAPANTAKIKQAKWEKlmggggskrkRSSSDAAAKAPASSGPSERKR 269
                  2344444444444444444444433332333333333332222.2222222222111122222222222333332222.34444444444443333332233434455555555555555555556777766543334444455556666666665 PP

>> TIGR02451  anti_sig_ChrR: anti-sigma factor, putative, ChrR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   2.4   0.00041      0.19      39     114 ..     166     241 ..     100     258 .. 0.83

  Alignments for each domain:
  == domain 1    score: 9.3 bits;  conditional E-value: 0.00041
    TIGR02451  39 akleaeggelledledealeeaaldsvlalldeqeesepkieetvlveradirirlPevlrdyvkllelrWrslgg 114
                  a l + +++   d ++ea +++++d+   + + +e+ ++ +++t lv+  ++ +++P+  ++ +k+++ +W++l g
  MMETSP1137-20121227|10079_1 166 AVLSKRKAQAEADASEEARKQKMWDERKKQREVEEKAAARAHSTSLVDAPQTSLVAPAAPANTAKIKQAKWEKLMG 241
                  334445555669999************999999999999999*****************************98633 PP

>> TIGR01399  hrcV: type III secretion protein, HrcV family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   4.8    0.0055       2.5     334     468 ..      76     208 ..      37     225 .. 0.66

  Alignments for each domain:
  == domain 1    score: 4.2 bits;  conditional E-value: 0.0055
    TIGR01399 334 askkesdkvaealplilelskdlqesvekealeeeiervrralfedlGvplPeilvrveesleeeef.eilleevpvlkatlkadkvlleeseaeleleaiqaesekkakgesqvvwveeeeaeklekaglevvsk 468
                    ++e++k +e  +l  +++++l+e  e ++++e+i ++ ++l  d   +   +      +l+ee++ e++l+   +++++++a++ +l++ ea l++ ++qae + ++++++q +w e+++++++e+++ +  ++
  MMETSP1137-20121227|10079_1  76 DYHEEQKKNPE--ELPEHVTRKLSE-KELAKKKEQIVERNEQLERDATQKAALFAESRGTHLNEEQVeEMQLRASILQSKEMSANQKRLRHIEAVLSKRKAQAEADASEEARKQKMWDERKKQREVEEKAAARAHS 208
                  22222222233..333344444444.34444568888888888888888888888778888888877347888888888899999999999999999999999998888889999998888888777766554443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (294 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       435  (0.106046); expected 82.0 (0.02)
Passed bias filter:                      123  (0.0299854); expected 82.0 (0.02)
Passed Vit filter:                        23  (0.00560702); expected 4.1 (0.001)
Passed Fwd filter:                        11  (0.00268162); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.48u 0.13s 00:00:00.61 Elapsed: 00:00:00.90
# Mc/sec: 431.16
//
Query:       MMETSP1137-20121227|10080_1  [L=643]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (643 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       127  (0.0309605); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                        20  (0.00487567); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.48u 0.13s 00:00:00.61 Elapsed: 00:00:00.65
# Mc/sec: 1305.68
//
Query:       MMETSP1137-20121227|10081_1  [L=187]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (187 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        98  (0.0238908); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.18s 00:00:00.37 Elapsed: 00:00:00.37
# Mc/sec: 667.08
//
Query:       MMETSP1137-20121227|10085_1  [L=72]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        28  (0.00682594); expected 82.0 (0.02)
Passed bias filter:                       28  (0.00682594); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.15s 00:00:00.27 Elapsed: 00:00:00.28
# Mc/sec: 327.70
//
Query:       MMETSP1137-20121227|10086_1  [L=77]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00091   16.0   0.0      0.001   15.8   0.0    1.0  1  TIGR00420 trmU: tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase


Domain annotation for each model (and alignments):
>> TIGR00420  trmU: tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0   2.5e-07     0.001     317     351 .]      13      46 ..       3      46 .. 0.84

  Alignments for each domain:
  == domain 1    score: 15.8 bits;  conditional E-value: 2.5e-07
    TIGR00420 317 dnlievsldepqaavtpGqsavlYkddivLGggii 351
                  + ++ ++lde  a++tp q++ +Y++d++LGgg i
  MMETSP1137-20121227|10086_1  13 ERQVLITLDEC-AQMTPMQAVAFYDGDVCLGGGQI 46 
                  45678888875.579******************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (77 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        56  (0.0136519); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.13u 0.11s 00:00:00.24 Elapsed: 00:00:00.25
# Mc/sec: 406.53
//
Query:       MMETSP1137-20121227|10088_1  [L=134]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (134 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        78  (0.0190151); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.18s 00:00:00.32 Elapsed: 00:00:00.32
# Mc/sec: 552.70
//
Query:       MMETSP1137-20121227|10089_1  [L=210]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.9e-31  106.0   0.1    6.2e-19   66.3   0.0    2.8  3  TIGR00884 guaA_Cterm: GMP synthase (glutamine-hydrolyzing), C-terminal domain


Domain annotation for each model (and alignments):
>> TIGR00884  guaA_Cterm: GMP synthase (glutamine-hydrolyzing), C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.8   0.1   2.8e-13   1.2e-09     168     198 ..       2      32 ..       1      53 [. 0.91
   2 ?    0.3   0.0     0.018        73     277     298 ..      65      86 ..      48      95 .. 0.82
   3 !   66.3   0.0   1.5e-22   6.2e-19     201     310 .]     103     210 .]      94     210 .] 0.89

  Alignments for each domain:
  == domain 1    score: 35.8 bits;  conditional E-value: 2.8e-13
    TIGR00884 168 evrklgkelGlpeelvarqPfPGPGlavrvl 198
                  evr+lg  lGlp +lv+rqPfPGPGla+r l
  MMETSP1137-20121227|10089_1   2 EVRELGVDLGLPPHLVWRQPFPGPGLAIRTL 32 
                  9****************************87 PP

  == domain 2    score: 0.3 bits;  conditional E-value: 0.018
    TIGR00884 277 lleriskrivneveevsrvvyd 298
                   l  i++ i   v+ev+rv++ 
  MMETSP1137-20121227|10089_1  65 ALVSIAREIPCHVHEVNRVIFV 86 
                  56789999999********985 PP

  == domain 3    score: 66.3 bits;  conditional E-value: 1.5e-22
    TIGR00884 201 vtkekleivrkadaiveeelkkagleeklwqafavlldvksvGvkGdkrtydkvvalravesldamtadva....elpydlleriskrivneveevsrvvyditskPPatiewe 310
                  ++ke le +r+adaiv+e l+k +l ++l q+ +vl +v      G  +t ++ + +ra  ++d+mt + a    ++p++ l+++ +ri+++v++++rv++ditskPPat ewe
  MMETSP1137-20121227|10089_1 103 LRKEPLEQLREADAIVTEVLTKYDLLRSLAQVPVVLFPV------GFGKTDGRSIGIRAFITRDFMTGSPAlpgrDIPFEALDELQSRILSQVPGIARVALDITSKPPATTEWE 210
                  57899*********************************5......33455566799***********998644448*************************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (210 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       119  (0.0290102); expected 82.0 (0.02)
Passed bias filter:                      113  (0.0275475); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.23u 0.14s 00:00:00.37 Elapsed: 00:00:00.36
# Mc/sec: 769.94
//
Query:       MMETSP1137-20121227|10090_1  [L=154]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.3e-10   36.5   0.0      5e-10   36.3   0.0    1.0  1  TIGR02938 nifL_nitrog: nitrogen fixation negative regulator NifL
    4.3e-07   27.9   0.0    6.2e-07   27.4   0.0    1.2  1  TIGR00229 sensory_box: PAS domain S-box protein


Domain annotation for each model (and alignments):
>> TIGR02938  nifL_nitrog: nitrogen fixation negative regulator NifL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.3   0.0   2.4e-13     5e-10      28     121 ..       2      99 ..       1     116 [. 0.85

  Alignments for each domain:
  == domain 1    score: 36.3 bits;  conditional E-value: 2.4e-13
    TIGR02938  28 yanaafseitGyakeeviGknesvlsnrttPpevyqalwgslaekkPwaGkllnrrkdgelylaeltvaPvlneaGetthf.lGmhrdv...telhel 121
                  y+n+ fs+ tGy ++e +G+n   l    t p    ++ +sl +       lln  kdg+ +   l++ Pv + +Ge   f +G+  ++   +e h+ 
  MMETSP1137-20121227|10090_1   2 YVNKEFSHATGYDRDEAVGRNCRFLQGPETCPHAVLEMVESLRNCTFLHTSLLNYCKDGTTFENMLSLQPVADSSGEQSRFcIGVQSKIdivSEGHKW 99 
                  9**************************999999999****************************************9887648988764222566654 PP

>> TIGR00229  sensory_box: PAS domain S-box protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.4   0.0     3e-10   6.2e-07      29     112 ..       2      85 ..       1      93 [. 0.82

  Alignments for each domain:
  == domain 1    score: 27.4 bits;  conditional E-value: 3e-10
    TIGR00229  29 yvNrafeeifGYsaeeliGrnvlelipeedree.vrerierrlegerepvseerrvkrkdGseiwvevsvspird.aggelgvvgi 112
                  yvN++f   +GY ++e++Grn + l  +e   + v e++e  +      + +  ++ +kdG+++   +s++p+ d +g++  + + 
  MMETSP1137-20121227|10090_1   2 YVNKEFSHATGYDRDEAVGRNCRFLQGPETCPHaVLEMVESLRN-CTFLHTSLLNY-CKDGTTFENMLSLQPVADsSGEQSRFCIG 85 
                  8***********************66666655505555555555.56899999998.******************99998877655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (154 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        83  (0.020234); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.18u 0.16s 00:00:00.34 Elapsed: 00:00:00.60
# Mc/sec: 338.77
//
Query:       MMETSP1137-20121227|10092_1  [L=142]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (142 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       207  (0.0504632); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.17s 00:00:00.33 Elapsed: 00:00:00.56
# Mc/sec: 328.81
//
Query:       MMETSP1137-20121227|10094_1  [L=66]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (66 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        26  (0.00633837); expected 82.0 (0.02)
Passed bias filter:                       26  (0.00633837); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.11s 00:00:00.22 Elapsed: 00:00:00.37
# Mc/sec: 235.44
//
Query:       MMETSP1137-20121227|10098_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       214  (0.0521697); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.12s 00:00:00.26 Elapsed: 00:00:00.30
# Mc/sec: 228.78
//
Query:       MMETSP1137-20121227|10100_1  [L=744]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      2e-09   35.5   0.0    4.4e-09   34.4   0.0    1.5  1  TIGR00229 sensory_box: PAS domain S-box protein
    6.7e-08   29.3   0.1    1.3e-07   28.3   0.0    1.4  2  TIGR02938 nifL_nitrog: nitrogen fixation negative regulator NifL


Domain annotation for each model (and alignments):
>> TIGR00229  sensory_box: PAS domain S-box protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.4   0.0   2.2e-12   4.4e-09       6     112 ..     440     553 ..     437     555 .. 0.86

  Alignments for each domain:
  == domain 1    score: 34.4 bits;  conditional E-value: 2.2e-12
    TIGR00229   6 ryrailesspdaiivvdeeG...nilyvNrafeeifGYsaeeliGrnvle.lipeedreevrerierrlegerepvseerrv..krkdGseiwvevsvspird.aggelgvvgi 112
                   + a++++ ++ai+vvd +     +++vN afe ++GYs+ e++G n +     + d + +++ +e ++e+++   s  +rv  ++k+G+e+   v++ pi + ag+ ++ v++
  MMETSP1137-20121227|10100_1 440 TFTAMCDNLDVAIVVVDVRVgglPLTFVNSAFENLTGYSRHEAVGNNCRFlQGDKTDASSIAQFVEFIREPKIGSSSDIVRVinYTKQGEEFENCVTLHPIFNqAGKYTYSVAV 553
                  699**************875222579************************66677788888999999999777777777777799*****************999999998887 PP

>> TIGR02938  nifL_nitrog: nitrogen fixation negative regulator NifL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.1      0.31   6.3e+02     165     277 ..      67      93 ..      44     111 .. 0.58
   2 !   28.3   0.0   6.4e-11   1.3e-07       6     110 ..     441     552 ..     438     570 .. 0.84

  Alignments for each domain:
  == domain 1    score: -3.6 bits;  conditional E-value: 0.31
    TIGR02938 165 dlkveepaesllkllreelaealeelenqekafsnkelrfdrgggrsarwlsvagrvirieeesadsffaaaekryllltiddiselrkkqedarlsalkallaeeeklealr 277
                  d ++e+     l++lr+e++ a++ +                                                                                      +
  MMETSP1137-20121227|10100_1  67 DQQQEQQIANELESLRQEMETAMQAM--------------------------------------------------------------------------------------Q 93 
                  43444444444444444444444333......................................................................................2 PP

  == domain 2    score: 28.3 bits;  conditional E-value: 6.4e-11
    TIGR02938   6 frqtvdqapvaisitdlkan...ilyanaafseitGyakeeviGknesvlsnrttPpevyqalwgslaekkPwaG....kllnrrkdgelylaeltvaPvlneaGetthflG 110
                  f +  d+ +vai + d +     + ++n+af+++tGy+++e +G+n   l   +t      ++ + + e k  +     +++n  k ge +   +t+ P+ n+aG+ t+ + 
  MMETSP1137-20121227|10100_1 441 FTAMCDNLDVAIVVVDVRVGglpLTFVNSAFENLTGYSRHEAVGNNCRFLQGDKTDASSIAQFVEFIREPKIGSSsdivRVINYTKQGEEFENCVTLHPIFNQAGKYTYSVA 552
                  66778999*********98622266**************************9999999999999999988866543333799************************999775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (744 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       195  (0.0475378); expected 82.0 (0.02)
Passed bias filter:                      145  (0.0353486); expected 82.0 (0.02)
Passed Vit filter:                        20  (0.00487567); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.17s 00:00:00.71 Elapsed: 00:00:00.65
# Mc/sec: 1510.77
//
Query:       MMETSP1137-20121227|10101_1  [L=70]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       188  (0.0458313); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.15s 00:00:00.28 Elapsed: 00:00:00.30
# Mc/sec: 307.97
//
Query:       MMETSP1137-20121227|10103_1  [L=2172]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        1.4    6.8  14.2        4.1    5.3   0.0    5.5  6  TIGR01376 POMP_repeat: chlamydial polymorphic outer membrane protein repeat


Domain annotation for each model (and alignments):
>> TIGR01376  POMP_repeat: chlamydial polymorphic outer membrane protein repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.0      0.01        43      13      21 ..       2      10 ..       1      14 [. 0.83
   2 ?   -2.8   0.0      0.37   1.5e+03      11      19 ..      56      64 ..      56      68 .. 0.84
   3 ?    1.7   0.2     0.014        59       5      24 ..     108     126 ..     105     129 .. 0.77
   4 ?    5.3   0.0   0.00099       4.1       5      22 ..     788     804 ..     786     806 .. 0.89
   5 ?    3.3   0.1    0.0043        18      10      23 ..     818     831 ..     815     833 .. 0.90
   6 ?   -2.9   0.1       0.4   1.6e+03      17      27 ..    1231    1240 ..    1231    1240 .. 0.85

  Alignments for each domain:
  == domain 1    score: 2.1 bits;  conditional E-value: 0.01
    TIGR01376 13 kgsGGAIya 21
                  g GGAI++
  MMETSP1137-20121227|10103_1  2 LGDGGAIAC 10
                 679*****9 PP

  == domain 2    score: -2.8 bits;  conditional E-value: 0.37
    TIGR01376 11 sakgsGGAI 19
                 +a  +GGA+
  MMETSP1137-20121227|10103_1 56 TARQGGGAL 64
                 68999**97 PP

  == domain 3    score: 1.7 bits;  conditional E-value: 0.014
    TIGR01376   5 ilFsnNsakgsGGAIyatgk 24 
                  ++F +  a+ sGGA+++  +
  MMETSP1137-20121227|10103_1 108 TTFDGCRAERSGGALSSA-A 126
                  6777778999******98.4 PP

  == domain 4    score: 5.3 bits;  conditional E-value: 0.00099
    TIGR01376   5 ilFsnNsakgsGGAIyat 22 
                   lF+nN+a  +G A y +
  MMETSP1137-20121227|10103_1 788 CLFTNNTAD-RGAAVYVS 804
                  69*******.******87 PP

  == domain 5    score: 3.3 bits;  conditional E-value: 0.0043
    TIGR01376  10 NsakgsGGAIyatg 23 
                  N+a  +GG+ y +g
  MMETSP1137-20121227|10103_1 818 NTARQRGGGFYVNG 831
                  9**********987 PP

  == domain 6    score: -2.9 bits;  conditional E-value: 0.4
    TIGR01376   17 GAIyatgkisi 27  
                   GAI+++ ++s+
  MMETSP1137-20121227|10103_1 1231 GAIFGG-TLSF 1240
                   9****9.8875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (2172 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        94  (0.0229157); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.17u 0.15s 00:00:01.31 Elapsed: 00:00:01.00
# Mc/sec: 2866.80
//
Query:       MMETSP1137-20121227|10105_1  [L=327]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (327 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        99  (0.0241346); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.11s 00:00:00.39 Elapsed: 00:00:00.41
# Mc/sec: 1052.69
//
Query:       MMETSP1137-20121227|10106_1  [L=153]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0068   13.5   0.2     0.0081   13.3   0.1    1.1  1  TIGR01963 PHB_DH: 3-hydroxybutyrate dehydrogenase
  ------ inclusion threshold ------
      0.018   12.6   0.0      0.029   11.9   0.0    1.3  1  TIGR01829 AcAcCoA_reduct: acetoacetyl-CoA reductase
      0.019   11.9   0.0      0.022   11.7   0.0    1.1  1  TIGR02685 pter_reduc_Leis: pteridine reductase


Domain annotation for each model (and alignments):
>> TIGR01963  PHB_DH: 3-hydroxybutyrate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   0.1   5.9e-06    0.0081     128     184 ..      34      94 ..      18     110 .. 0.89

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 5.9e-06
    TIGR01963 128 gwGriiniasvhglvasafKsaY....vaaKHglvGltKvlAlEvAetgitanaicPgyvr 184
                   wG i+n+++ +g  + a K +     + aK +l  lt + A+   ++ i  n++  g+v+
  MMETSP1137-20121227|10106_1  34 PWGHIVNVSALEGKFGVAKKQSChphtNMAKAALNMLTCSSAIGLYQERILINSVDTGWVT 94 
                  59****************99764233379******************************95 PP

>> TIGR01829  AcAcCoA_reduct: acetoacetyl-CoA reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   2.1e-05     0.029     129     187 ..      35      96 ..      26     101 .. 0.85

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 2.1e-05
    TIGR01829 129 fGriinissvnGlkG....qfGqanysaakaGliGftkalaqegakkgvtvnviaPGyiatem 187
                  +G i+n+s+++G+ G    q        aka l  +t + a    ++ + +n +  G++ t+m
  MMETSP1137-20121227|10106_1  35 WGHIVNVSALEGKFGvakkQSCHPHTNMAKAALNMLTCSSAIGLYQERILINSVDTGWV-TDM 96 
                  9***********8662222666677789*****************************98.555 PP

>> TIGR02685  pter_reduc_Leis: pteridine reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   1.6e-05     0.022     173     204 ..      60      91 ..      49     130 .. 0.90

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 1.6e-05
    TIGR02685 173 ytmakealeGltrsaalelaslqirvngvapG 204
                   +mak al+ lt s+a+ l   +i +n+v  G
  MMETSP1137-20121227|10106_1  60 TNMAKAALNMLTCSSAIGLYQERILINSVDTG 91 
                  58***************************988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (153 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        73  (0.0177962); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.17u 0.14s 00:00:00.31 Elapsed: 00:00:00.31
# Mc/sec: 651.43
//
Query:       MMETSP1137-20121227|10107_1  [L=93]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.1e-37  124.2   7.8    4.8e-37  124.0   5.4    1.0  1  TIGR00280 L37a: ribosomal protein L37a
  ------ inclusion threshold ------
      0.051   11.7   1.4      0.076   11.1   0.1    1.8  2  TIGR04129 CxxH_BA5709: CxxH/CxxC protein, BA_5709 family


Domain annotation for each model (and alignments):
>> TIGR00280  L37a: ribosomal protein L37a
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  124.0   5.4   2.3e-40   4.8e-37       3      90 ..       4      91 ..       2      93 .] 0.97

  Alignments for each domain:
  == domain 1    score: 124.0 bits;  conditional E-value: 2.3e-40
    TIGR00280  3 krtkkvgitGrfGpryGlkvrravkkieikqkkkykCkvCgkkavkrestgiWkCrkCgakvaGGaytpvtaagktvekairriverk 90
                 krtkk gitG++G+ryG ++r++vkkiei q+ +y+C++Cgk avkr+  giW C+ C+++ aGGayt  ta ++ v+++irr++e  
  MMETSP1137-20121227|10107_1  4 KRTKKAGITGKYGVRYGASLRKQVKKIEISQHSRYTCSFCGKDAVKRSVVGIWACSACKKVTAGGAYTLHTAQAAQVRSTIRRLREGT 91
                 8************************************************************************************975 PP

>> TIGR04129  CxxH_BA5709: CxxH/CxxC protein, BA_5709 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.1   3.7e-05     0.076      25      46 ..      27      48 ..      26      48 .. 0.88
   2 ?   -1.4   0.1       0.3   6.1e+02      37      43 ..      57      63 ..      56      65 .. 0.82

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 3.7e-05
    TIGR04129 25 lekleeekklskkCeyCeeeAv 46
                 ++k+e ++++  +C++C ++Av
  MMETSP1137-20121227|10107_1 27 VKKIEISQHSRYTCSFCGKDAV 48
                 6788899999*********996 PP

  == domain 2    score: -1.4 bits;  conditional E-value: 0.3
    TIGR04129 37 kCeyCee 43
                  C+ C++
  MMETSP1137-20121227|10107_1 57 ACSACKK 63
                 5999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (93 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       148  (0.03608); expected 82.0 (0.02)
Passed bias filter:                      121  (0.0294978); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.15u 0.17s 00:00:00.32 Elapsed: 00:00:00.52
# Mc/sec: 236.06
//
Query:       MMETSP1137-20121227|10109_1  [L=905]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.014   12.5   0.0      0.024   11.8   0.0    1.2  1  TIGR01486 HAD-SF-IIB-MPGP: mannosyl-3-phosphoglycerate phosphatase family


Domain annotation for each model (and alignments):
>> TIGR01486  HAD-SF-IIB-MPGP: mannosyl-3-phosphoglycerate phosphatase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   5.7e-06     0.024      80     146 ..     409     475 ..     397     490 .. 0.82

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 5.7e-06
    TIGR01486  80 eeialGksyekiraeLeeleeelglklkglgdltaeeiaeltGLsreaaalaqereysetlle.dsee 146
                  + + lG+++ ++ ++L +l + +  +  +l++l  ++  ++ GL+  + a a++reyse +     ++
  MMETSP1137-20121227|10109_1 409 QLEYLGWRAVQLPTALAKLLKAA-TNCPTLDQLWSQAESRVRGLPDWQPANAAQREYSERFRAaAADW 475
                  55679************998877.77778******************************997744444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (905 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        78  (0.0190151); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.10s 00:00:00.63 Elapsed: 00:00:00.73
# Mc/sec: 1636.30
//
Query:       MMETSP1137-20121227|10110_1  [L=230]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.6e-38  130.6   0.0    1.8e-38  130.4   0.0    1.0  1  TIGR01117 mmdA: methylmalonyl-CoA decarboxylase alpha subunit
     0.0067   13.7   0.3     0.0098   13.1   0.2    1.3  1  TIGR00513 accA: acetyl-CoA carboxylase, carboxyl transferase, alpha subunit


Domain annotation for each model (and alignments):
>> TIGR01117  mmdA: methylmalonyl-CoA decarboxylase alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  130.4   0.0   8.9e-42   1.8e-38     285     495 ..       2     215 ..       1     224 [. 0.89

  Alignments for each domain:
  == domain 1    score: 130.4 bits;  conditional E-value: 8.9e-42
    TIGR01117 285 itaivdngeylelqpyyaknivvgfaridgksvgivanqpkvlagvldidssdkiarfvrfcdafnipivtfvdvpgylpgvdqeyggiirhgakvlyayseatvpkvtiilrkayggaylamgskdlgadvvyayptaeiavmgpegaaniifr.keikeakdpe.......alrkekieeyrekfanpykaaargyvddviepketrakvvsaleil 495
                  +++ivd +e+ e++  y + +++gfar++g svgivan+     gvl  +s+ k a+fv +c    ip+v + ++ g++ g + e  gi +hgak++ a + a vpk+t+++  ++g     m+ +     +++ +p a i vmg e aa ++ + ke ++ak          +  +++i++  e  a+py a+ar + d vi p++tr ++ + l++ 
  MMETSP1137-20121227|10110_1   2 LSRIVDGSELSEFKANYGTSLITGFARVHGYSVGIVAND-----GVLFSESALKGAHFVELCCQRGIPLVFLQNITGFMVGRQYEAEGIAKHGAKLVNAVATANVPKLTVVVGGSFGAGNYGMCGRAYSPRFMWMWPNARIGVMGGEQAAGVLCQvKEAQAAKAGTpldgpqlEAYRAQIRNRFESEAEPYFATARLWDDGVISPEQTRDALAMGLAAA 215
                  5789**********************************7.....89999*****************************************************************************************************999864777777764411111123456666666677799**********************99988765 PP

>> TIGR00513  accA: acetyl-CoA carboxylase, carboxyl transferase, alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.1   0.2   4.8e-06    0.0098     139     238 ..      50     153 ..      20     170 .. 0.75

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 4.8e-06
    TIGR00513 139 kalrlmklaekfklPiitfidtkGaypGigaeerGqseaiaknlremarlkvPvicvviGeGGsGGalaigvgdk......vamleysvysvisPegcaailWkda 238
                  k  ++++l  + ++P++ + + +G   G++ e  G +   ak ++ +a+ +vP ++vv+G  Gs Ga   g+  +      + m  ++   v+  e +a +l +  
  MMETSP1137-20121227|10110_1  50 KGAHFVELCCQRGIPLVFLQNITGFMVGRQYEAEGIAKHGAKLVNAVATANVPKLTVVVG--GSFGAGNYGMCGRaysprfMWMWPNARIGVMGGEQAAGVLCQVK 153
                  55556666667789********************************************97..44444444433331112234688899999999999999987543 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (230 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       103  (0.0251097); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.22u 0.13s 00:00:00.35 Elapsed: 00:00:00.55
# Mc/sec: 551.95
//
Query:       MMETSP1137-20121227|10111_1  [L=383]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (383 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       119  (0.0290102); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.16s 00:00:00.44 Elapsed: 00:00:00.72
# Mc/sec: 702.11
//
Query:       MMETSP1137-20121227|10112_1  [L=198]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.2e-53  179.7   0.0    7.4e-53  177.0   0.0    1.8  1  TIGR03800 PLP_synth_Pdx2: pyridoxal 5'-phosphate synthase, glutaminase subunit Pdx2
    3.3e-06   24.6   0.0    4.8e-06   24.1   0.0    1.3  1  TIGR01382 PfpI: intracellular protease, PfpI family
    1.2e-05   23.1   0.0      0.071   10.7   0.0    2.1  2  TIGR01855 IMP_synth_hisH: imidazole glycerol phosphate synthase, glutamine amidotransferase subunit
    2.3e-05   21.7   0.1    0.00016   18.9   0.0    2.0  2  TIGR01737 FGAM_synth_I: phosphoribosylformylglycinamidine synthase I
    0.00046   17.5   0.1        0.1    9.8   0.0    2.2  2  TIGR00888 guaA_Nterm: GMP synthase (glutamine-hydrolyzing), N-terminal domain
  ------ inclusion threshold ------
      0.021   11.5   0.1      0.025   11.3   0.0    1.1  1  TIGR00379 cobB: cobyrinic acid a,c-diamide synthase
      0.024   12.2   0.0      0.033   11.7   0.0    1.2  1  TIGR01383 not_thiJ: DJ-1 family protein
      0.024   11.3   0.0      0.031   10.9   0.0    1.1  1  TIGR00313 cobQ: cobyric acid synthase CobQ


Domain annotation for each model (and alignments):
>> TIGR03800  PLP_synth_Pdx2: pyridoxal 5'-phosphate synthase, glutaminase subunit Pdx2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  177.0   0.0   1.5e-55   7.4e-53       5     182 ..       2     198 .]       1     198 [] 0.90

  Alignments for each domain:
  == domain 1    score: 177.0 bits;  conditional E-value: 1.5e-55
    TIGR03800   5 lalqGavrehikalealgveavvvkrledlde..idglilPGGesttlskllektglleplreliksglPvfGtcaGlillakeiieakegq...lealdlkvernayGrqvdsfeaevevkgvgdkpleGvfiraPkivevgdeveilakve............dk..ivavrqgnvlassfhPeltddvrvheyf 182
                  lalqG+++eh  +l +lg  + ++++l dl     dg+++PGGestt+ +l+ + gll plre + sg+Pv+GtcaGli la++++++keg    ++ +d++v+rn yG qvdsfe+ ++v  +  +p   +firaP i + g +ve+l+k++            +    vav+qgn++++ fhPelt ++  heyf
  MMETSP1137-20121227|10112_1   2 LALQGGYHEHKVMLSQLGCSVYEIRQLADLTAreYDGMVIPGGESTTMGHLALRLGLLTPLREYVASGKPVMGTCAGLIXLANDVVGQKEGGqelVGGMDITVQRNFYGSQVDSFETMLDVSFLPSRPAHALFIRAPAILRTGPKVEVLSKLKlpsapdaaateaETlvPVAVQQGNLIGLAFHPELTREQCWHEYF 198
                  8****************************975449*****************************************************99766889*****************************************************9874333332222211223359*************************9 PP

>> TIGR01382  PfpI: intracellular protease, PfpI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.1   0.0   9.4e-09   4.8e-06      43     109 ..      16      84 ..       3     117 .. 0.84

  Alignments for each domain:
  == domain 1    score: 24.1 bits;  conditional E-value: 9.4e-09
    TIGR01382  43 ekkgakvtvdatlddvdaeeydalvipGGra..peylrldekvielvrefaekgKpvaaIChgpqlLis 109
                  ++ g +v   ++l d++a eyd++vipGG++    +l l   + +  re++ +gKpv   C g   L++
  MMETSP1137-20121227|10112_1  16 SQLGCSVYEIRQLADLTAREYDGMVIPGGESttMGHLALRLGLLTPLREYVASGKPVMGTCAGLIXLAN 84 
                  56777777778999***************995556788888889999***************9888775 PP

>> TIGR01855  IMP_synth_hisH: imidazole glycerol phosphate synthase, glutamine amidotransferase subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.4   0.0   0.00017     0.089      33     104 ..      32     104 ..       7     110 .. 0.67
   2 !   10.7   0.0   0.00014     0.071     159     184 ..     164     189 ..     156     194 .. 0.82

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 0.00017
    TIGR01855  33 elekadklvlPGVGafkeamkklrele.lellaekvvkkkkpvlgiClGmQllfek..seEgkevkglglikgkv 104
                  +++++d +v+PG  + + +   lr l+ l+ l ++ v+++kpv+g C G+  l++   ++  + ++ +g ++ +v
  MMETSP1137-20121227|10112_1  32 TAREYDGMVIPGGESTTMGHLALR-LGlLTPL-REYVASGKPVMGTCAGLIXLANDvvGQKEGGQELVGGMDITV 104
                  56899*******666665555555.4625555.9999************99998762222233445666655555 PP

  == domain 2    score: 10.7 bits;  conditional E-value: 0.00014
    TIGR01855 159 adygekfvaavekdnivgvQFHPEkS 184
                  ++ ++  + av+++n++g+ FHPE  
  MMETSP1137-20121227|10112_1 164 TEAETLVPVAVQQGNLIGLAFHPELT 189
                  556677889***************65 PP

>> TIGR01737  FGAM_synth_I: phosphoribosylformylglycinamidine synthase I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.0   3.1e-07   0.00016      30      91 ..      25      82 ..       4     109 .. 0.84
   2 ?    0.5   0.0      0.13        69     189     208 ..     172     191 ..     163     196 .. 0.80

  Alignments for each domain:
  == domain 1    score: 18.9 bits;  conditional E-value: 3.1e-07
    TIGR01737 30 lvwyedkeledydavvlpGGFsyGDylRagaiaaaspvlkevkelaekGkpvlGiCnGfqil 91
                 +    d ++ +yd++v+pGG s       g +a +  +l+ ++e +++Gkpv+G C G+  l
  MMETSP1137-20121227|10112_1 25 IRQLADLTAREYDGMVIPGGEST----TMGHLALRLGLLTPLREYVASGKPVMGTCAGLIXL 82
                 33667889999********9886....68*****************************8655 PP

  == domain 2    score: 0.5 bits;  conditional E-value: 0.13
    TIGR01737 189 ivneegnvlglmPhPerale 208
                  ++ ++gn++gl  hPe   e
  MMETSP1137-20121227|10112_1 172 VAVQQGNLIGLAFHPELTRE 191
                  677899*********97665 PP

>> TIGR00888  guaA_Nterm: GMP synthase (glutamine-hydrolyzing), N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.8   0.0    0.0002       0.1      30      94 ..      25      93 ..      10     109 .. 0.74
   2 !    5.7   0.0    0.0037       1.9     139     171 ..     161     192 ..     151     197 .. 0.66

  Alignments for each domain:
  == domain 1    score: 9.8 bits;  conditional E-value: 0.0002
    TIGR00888 30 atttleeikevepkgiilsGgPesvkaenaekv.....dekifelgvPvlGiCyGmqllakalGgevera 94
                 +++ l ++ ++e  g+++ Gg + ++ + a ++      ++++  g Pv+G C G+  la+ + g+ e +
  MMETSP1137-20121227|10112_1 25 IRQ-LADLTAREYDGMVIPGGESTTMGHLALRLglltpLREYVASGKPVMGTCAGLIXLANDVVGQKEGG 93
                 443.67788889999999999999988877654222225678899**************99877765544 PP

  == domain 2    score: 5.7 bits;  conditional E-value: 0.0037
    TIGR00888 139 vlaksencpvaalkkeekklyGvqfhPevthte 171
                    a +e   +  ++ ++ +l G+ fhPe t+ +
  MMETSP1137-20121227|10112_1 161 AAA-TEAETLVPVAVQQGNLIGLAFHPELTREQ 192
                  433.334444445566679*********98765 PP

>> TIGR00379  cobB: cobyrinic acid a,c-diamide synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   4.9e-05     0.025     265     354 ..      14     103 ..       4     122 .. 0.79

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 4.9e-05
    TIGR00379 265 aleenaaelvffspledkelPdvdalyiGGGfPelfaeeleknkelresikefiadGrpiygeCGGlmylsks.ldnvegeiemvgllpla 354
                  +l++ + ++  +  l d    + d++ i GG       +l     l   ++e+ a+G+p+ g C Gl+ l++  + ++eg  e+vg ++++
  MMETSP1137-20121227|10112_1  14 MLSQLGCSVYEIRQLADLTAREYDGMVIPGGESTT-MGHLALRLGLLTPLREYVASGKPVMGTCAGLIXLANDvVGQKEGGQELVGGMDIT 103
                  67777888888888888888888999998886655.4578888889999********************9876156778877788766655 PP

>> TIGR01383  not_thiJ: DJ-1 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   6.5e-05     0.033      50     112 ..      22      85 ..       7     103 .. 0.82

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 6.5e-05
    TIGR01383  50 lladksledveeeefDvivLpGGlpG.aenlkdsklleellkkqeskgklvAAICaaPivllaa 112
                  +   ++l+d+++ e+D +v+pGG    + +l+    l + l++  ++gk v   Ca+ i l++ 
  MMETSP1137-20121227|10112_1  22 VYEIRQLADLTAREYDGMVIPGGESTtMGHLALRLGLLTPLREYVASGKPVMGTCAGLIXLAND 85 
                  55557899***************86515689989999999999999999999999998877655 PP

>> TIGR00313  cobQ: cobyric acid synthase CobQ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   6.1e-05     0.031     284     354 ..      35     102 ..      23     117 .. 0.85

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 6.1e-05
    TIGR00313 284 dldvviiPGskdtiadlkalkesklaeeildlakeigiviGicGGyqvlgkelvdkekkesdvgdveGlgl 354
                  + d ++iPG  +t+    al+  +l   +++++  +  v+G c G   l++++v ++  e+++  v G+++
  MMETSP1137-20121227|10112_1  35 EYDGMVIPGGESTTMGHLALRL-GLLTPLREYVASGKPVMGTCAGLIXLANDVVGQK--EGGQELVGGMDI 102
                  56889***********999985.677889999999999***************9876..888888888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (198 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        88  (0.0214529); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         8  (0.00195027); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.21u 0.11s 00:00:00.32 Elapsed: 00:00:00.41
# Mc/sec: 637.41
//
Query:       MMETSP1137-20121227|10114_1  [L=273]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (273 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       138  (0.0336421); expected 82.0 (0.02)
Passed bias filter:                       39  (0.00950756); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.11s 00:00:00.33 Elapsed: 00:00:00.39
# Mc/sec: 923.92
//
Query:       MMETSP1137-20121227|10116_1  [L=374]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.9e-87  292.2   0.0    1.5e-82  276.1   0.0    2.0  2  TIGR01134 purF: amidophosphoribosyltransferase
    2.1e-07   28.0   0.0    3.1e-07   27.4   0.0    1.2  1  TIGR01251 ribP_PPkin: ribose-phosphate diphosphokinase
    0.00026   18.8   0.0    0.00039   18.2   0.0    1.3  1  TIGR00201 comF: comF family protein
  ------ inclusion threshold ------
      0.011   12.8   0.0      0.017   12.2   0.0    1.3  1  TIGR01304 IMP_DH_rel_2: IMP dehydrogenase family protein
      0.026   12.0   0.0      0.046   11.2   0.0    1.3  1  TIGR01744 XPRTase: xanthine phosphoribosyltransferase
      0.032   11.8   0.0      0.068   10.8   0.0    1.5  1  TIGR01203 HGPRTase: hypoxanthine phosphoribosyltransferase


Domain annotation for each model (and alignments):
>> TIGR01134  purF: amidophosphoribosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.0   5.9e-06     0.004     168     198 ..       4      33 ..       1      43 [. 0.78
   2 !  276.1   0.0   2.2e-85   1.5e-82     176     431 ..      48     329 ..      40     330 .. 0.89

  Alignments for each domain:
  == domain 1    score: 14.4 bits;  conditional E-value: 5.9e-06
    TIGR01134 168 klvavrDPvGvrPLvlgrkedgyvvaSEsvA 198
                  +++a+rDP+G+rPL++gr++ +     E+vA
  MMETSP1137-20121227|10116_1   4 GILAFRDPNGIRPLSYGRRQVT-PTPAEEVA 33 
                  689**************98876.34445555 PP

  == domain 2    score: 276.1 bits;  conditional E-value: 2.2e-85
    TIGR01134 176 vGvrPLvlgrkedgyvvaSEsvAld.lgaelvrdvepgevvvlkdge.lesrlveerk...aacvfEyvYfaRpDSv.dgesvyearvemGeelaees.....pveaDvvvpvpdsgvsaalgfaeesgvpyleglvkNrYvGRtFm.PtqeeReksvrlkLnpvreevegkrvvlvDDS.VRGtTsrqv.emlReaGAkevhvr.asppvraPcvyG.dmptreellaakst...eeeaelgaDslaylslegleaave.......ekeeklclacftgey 431
                    vr  v g  e +y+vaSEs  l+  g+el+ dv pg ++ l++g   e  +++ ++    +cvfEyvYfaRpDS+ dg svy++r++mGe+la ++     + + Dvv+pvpd++++aal+ a+++g+ y+eg++kNrYvGRtF+ P q  R+ksvr+kL+p+ +e++g++v+lvDDS VRGtTs+q+ +m+ReaGAk v+++ a+ppvr+P+vyG dmpt+eel+a++ +   e ++e+gaD + y++l++l++a+         + + ++++cf+g y
  MMETSP1137-20121227|10116_1  48 SPVRTKVTGPPEYEYMVASESGVLTsTGFELIGDVPPGHALLLRRGApPELFNCALAPaphCPCVFEYVYFARPDSIlDGVSVYRSRLKMGEKLALRMkeawpDHDIDVVIPVPDTARTAALECATHLGIVYREGFMKNRYVGRTFImPAQGLRKKSVRQKLSPIISEFAGRNVLLVDDSiVRGTTSKQIvQMAREAGAKRVYMAsAAPPVRFPNVYGiDMPTKEELIASRVKdisEVAMEIGADKVFYQELQDLKDAIIeagidqgVTLSGMDCSCFDGLY 329
                  55667778888889***********9*****************99988444445444444899******************************99766556777899***************************************88*****************************************99**************9***********************998743223344***************998756664444568899*****988 PP

>> TIGR01251  ribP_PPkin: ribose-phosphate diphosphokinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.4   0.0   4.5e-10   3.1e-07     143     245 ..     135     253 ..     122     261 .. 0.80

  Alignments for each domain:
  == domain 1    score: 27.4 bits;  conditional E-value: 4.5e-10
    TIGR01251 143 lsaspklieelkkke...lknlvvvsPDkGaverakkvakklg.lelaiieKeRds.............kenevevtnllgdvegkdvvivDDiisTggTlvkaaelLkekGAkkvivaa 245
                  l+  +kl+ ++k+     + ++v+  PD+   + a ++a++lg +  + + K+R               k+   +  +++ + +g++v++vDD i  g+T  + +++++e+GAk+v++a 
  MMETSP1137-20121227|10116_1 135 LKMGEKLALRMKEAWpdhDIDVVIPVPDTAR-TAALECATHLGiVYREGFMKNRYVgrtfimpaqglrkKSVRQKLSPIISEFAGRNVLLVDDSIVRGTTSKQIVQMAREAGAKRVYMAS 253
                  5555666666666556557777888888855.56888999999555578999999899999999999865556678999*************************************9875 PP

>> TIGR00201  comF: comF family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.0   5.7e-07   0.00039     132     184 ..     198     250 ..     138     255 .. 0.87

  Alignments for each domain:
  == domain 1    score: 18.2 bits;  conditional E-value: 5.7e-07
    TIGR00201 132 akeRkknlenafklkvkevqgrkivlvDDvvttGatlaeiaklllklgaaevq 184
                  + +Rkk ++ +++   +e+ gr++ lvDD +  G+t + i ++ ++ ga++v 
  MMETSP1137-20121227|10116_1 198 QGLRKKSVRQKLSPIISEFAGRNVLLVDDSIVRGTTSKQIVQMAREAGAKRVY 250
                  45788888888888899********************************9996 PP

>> TIGR01304  IMP_DH_rel_2: IMP dehydrogenase family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   2.4e-05     0.017     111     155 ..     268     313 ..     216     323 .. 0.92

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 2.4e-05
    TIGR01304 111 aPlkeellgkriaevrd.aGvitavrlsPqnasklakvvveaGvdl 155
                   P keel++ r++++ + a +i a ++  q+ + l ++++eaG+d 
  MMETSP1137-20121227|10116_1 268 MPTKEELIASRVKDISEvAMEIGADKVFYQELQDLKDAIIEAGIDQ 313
                  599************9845689**********************95 PP

>> TIGR01744  XPRTase: xanthine phosphoribosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   6.7e-05     0.046     119     149 ..     220     250 ..     204     254 .. 0.89

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 6.7e-05
    TIGR01744 119 rvliiddflanGdaarglvdivkqagakivG 149
                  +vl++dd +  G +++ +v+++++agak v 
  MMETSP1137-20121227|10116_1 220 NVLLVDDSIVRGTTSKQIVQMAREAGAKRVY 250
                  69*************************9775 PP

>> TIGR01203  HGPRTase: hypoxanthine phosphoribosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0    0.0001     0.068      81     119 ..     214     252 ..     198     255 .. 0.86

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 0.0001
    TIGR01203  81 edikdkdvLlveDivdtgltlkellellkarkpkslkiv 119
                  ++  +++vLlv+D +  g+t k+++++ ++ ++k + ++
  MMETSP1137-20121227|10116_1 214 SEFAGRNVLLVDDSIVRGTTSKQIVQMAREAGAKRVYMA 252
                  46679************************9999998776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (374 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       130  (0.0316919); expected 82.0 (0.02)
Passed bias filter:                      125  (0.0304729); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.34u 0.13s 00:00:00.47 Elapsed: 00:00:00.61
# Mc/sec: 809.24
//
Query:       MMETSP1137-20121227|10117_1  [L=170]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (170 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       214  (0.0521697); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.12s 00:00:00.34 Elapsed: 00:00:00.66
# Mc/sec: 339.97
//
Query:       MMETSP1137-20121227|10118_1  [L=141]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (141 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        52  (0.0126767); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.15s 00:00:00.31 Elapsed: 00:00:00.40
# Mc/sec: 465.26
//
Query:       MMETSP1137-20121227|10119_1  [L=60]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        19  (0.00463189); expected 82.0 (0.02)
Passed bias filter:                       15  (0.00365675); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.14s 00:00:00.27 Elapsed: 00:00:00.32
# Mc/sec: 247.48
//
Query:       MMETSP1137-20121227|10120_1  [L=100]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (100 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       144  (0.0351048); expected 82.0 (0.02)
Passed bias filter:                      100  (0.0243784); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.17s 00:00:00.33 Elapsed: 00:00:00.56
# Mc/sec: 231.56
//
Query:       MMETSP1137-20121227|10122_1  [L=79]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (79 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        49  (0.0119454); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.17s 00:00:00.29 Elapsed: 00:00:00.25
# Mc/sec: 417.09
//
Query:       MMETSP1137-20121227|10124_1  [L=184]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.034   11.7   0.1      0.051   11.1   0.0    1.4  1  TIGR00267 TIGR00267: TIGR00267 family protein


Domain annotation for each model (and alignments):
>> TIGR00267  TIGR00267: TIGR00267 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   1.2e-05     0.051      61     117 ..     127     180 ..      89     184 .] 0.78

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 1.2e-05
    TIGR00267  61 lreleksllveegklkdtiiykkarrrvilsglidGlstilGsvvPvlPflvfdvkt 117
                   re+e + ++  gk  +    k+a   v++ +l+  ls+  G   Pv+ +++++  t
  MMETSP1137-20121227|10124_1 127 NREKENHKMI--GK-AKKEFKKQAVPDVYVGMLTLQLSSSAGEDAPVVTLVTAQAST 180
                  3444444333..34.4556899***************************99988776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (184 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       160  (0.0390054); expected 82.0 (0.02)
Passed bias filter:                       96  (0.0234032); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.19u 0.18s 00:00:00.37 Elapsed: 00:00:00.34
# Mc/sec: 714.29
//
Query:       MMETSP1137-20121227|10125_1  [L=35]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (35 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        43  (0.0104827); expected 82.0 (0.02)
Passed bias filter:                       42  (0.0102389); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.39
# Mc/sec: 118.45
//
Query:       MMETSP1137-20121227|10126_1  [L=106]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (106 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        36  (0.00877621); expected 82.0 (0.02)
Passed bias filter:                       33  (0.00804486); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.14s 00:00:00.30 Elapsed: 00:00:00.39
# Mc/sec: 358.74
//
Query:       MMETSP1137-20121227|10127_1  [L=419]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0025   13.8   0.2      0.096    8.5   0.0    2.1  2  TIGR00870 trp: transient-receptor-potential calcium channel protein


Domain annotation for each model (and alignments):
>> TIGR00870  trp: transient-receptor-potential calcium channel protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    3.3   0.0   0.00086       3.5     129     160 ..      57      88 ..      53      89 .. 0.92
   2 !    8.5   0.0   2.3e-05     0.096     129     156 ..      90     117 ..      87     125 .. 0.91

  Alignments for each domain:
  == domain 1    score: 3.3 bits;  conditional E-value: 0.00086
    TIGR00870 129 tkgitalilAihkqnyeivklLlekgasvear 160
                  +kg t l++A+   n  +v+ Ll+ ga++++r
  MMETSP1137-20121227|10127_1  57 QKGRTLLMIAAPLGNEAVVRTLLDGGADLHLR 88 
                  6899************************9976 PP

  == domain 2    score: 8.5 bits;  conditional E-value: 2.3e-05
    TIGR00870 129 tkgitalilAihkqnyeivklLlekgas 156
                  ++g tal+ A+   + +iv+lLl+ ga+
  MMETSP1137-20121227|10127_1  90 FQGVTALMFAALAGEATIVRLLLDAGAD 117
                  689***********************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (419 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       142  (0.0346173); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.14s 00:00:00.47 Elapsed: 00:00:00.39
# Mc/sec: 1418.04
//
Query:       MMETSP1137-20121227|10128_1  [L=115]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (115 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        51  (0.012433); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.14s 00:00:00.29 Elapsed: 00:00:00.26
# Mc/sec: 583.80
//
Query:       MMETSP1137-20121227|10129_1  [L=357]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.3e-05   21.0  46.8    1.7e-05   20.6  32.5    1.2  1  TIGR02168 SMC_prok_B: chromosome segregation protein SMC
     0.0044   12.5  54.4    0.00034   16.2  23.0    1.9  2  TIGR02169 SMC_prok_A: chromosome segregation protein SMC


Domain annotation for each model (and alignments):
>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6  32.5   8.1e-09   1.7e-05     226     478 ..       8     256 ..       1     317 [. 0.64

  Alignments for each domain:
  == domain 1    score: 20.6 bits;  conditional E-value: 8.1e-09
    TIGR02168 226 elallvlrleelkeeleeleeelkeaeeeleeleaelkeleeeleelrlekseleeeleelqk.elqelkaeisrleqeieilkerleqlekeleeleeqleeleskkeeleeelaeleeeleelkeelesleaeleeaeaeleelesrleeleeeleelrsevaeleeqlaslnaelerleaeleqleerrerlkqeieelekkleeaeaelkelqeeleeleeeleeleeelerleealeeleeeleeaeqa 478
                  e a++ ++++e+++e  +l+ e+++  +++ +++++ k+ +   ++l++e ++l+ ++ ++ + +++++ ++i++le+  + ++       ke +++ e++++l +k + l ++ +e +e l+e++e +++l  +++++ a+++e++++++el++e++e++++ ++ +++  +l +e   l++e+ ++ +++++ ++e +e++k++++   +++e ++++ + ++++ +++ee+ r e+++ee+++   e e+a
  MMETSP1137-20121227|10129_1   8 EYAIAKRKFNEARAESTRLQHEKRSIFDQIYDADKQKKAQQDLTQRLKAELQQLDIDKGRASEiTVDDIDRKIKALEHAQQTTSLT----VKEDKKIMEDIKKLAAK-KPLIKQYEEAQESLKEVREHHNNLYTQVKAKMAQQAEMKKEEDELRKEMDEAKAREDAKRSDFPALFKERDALRKEIGEIRDEQRKIRDEFNEAKKEFSAYLRAVREQKQQIWQAQQAERKAAEEKLRKEREEEEAKRDPWEEEKA 256
                  56667777777777777777777777777777777777777777777777777776655554425566666666666655555555....34666666666666655.45555666666677777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777666666665555555555544444443332222222 PP

>> TIGR02169  SMC_prok_A: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    0.9  12.2    0.0071        15     828     941 ..       8     121 ..       1     127 [. 0.68
   2 !   16.2  23.0   1.7e-07   0.00034     665     867 ..     112     313 ..     107     323 .. 0.87

  Alignments for each domain:
  == domain 1    score: 0.9 bits;  conditional E-value: 0.0071
    TIGR02169 828 ekelleeeiqelqeeieeleeqkkeiekeieelkakleeleeeleeleaavreLeeelkdLkk.ereeleaelrelekkkeeleaeiekkrkrlkelkaklealeeelseleeev 941
                  e ++++ + +e+++e   l++ k++i ++i +  +++++ +   ++l+a++++L+  ++  ++  +++++ ++++le+++++ ++++++ +k +++ k kl+a++  ++++ee++
  MMETSP1137-20121227|10129_1   8 EYAIAKRKFNEARAESTRLQHEKRSIFDQIYDADKQKKAQQDLTQRLKAELQQLDIDKGRASEiTVDDIDRKIKALEHAQQTTSLTVKEDKKIMEDIK-KLAAKKPLIKQYEEAQ 121
                  44566777777777888888888888888888888888888888888888888876666554326778888888888888888888888777776665.5666666677776643 PP

  == domain 2    score: 16.2 bits;  conditional E-value: 1.7e-07
    TIGR02169 665 sgelvsasekeklerlrerleeLereleslqselrriekrldelssklsdaekkieeiekeleqleeeeeklkerleeleeklseleeeleekkeelkeleaeieeleeklaklkealedleaelseekieeieeelekleeevsriearleeieaelnklelekelleeeiqelqeeieeleeqkkeiekeieelkakleel 867
                    + ++++ +e+l+++re+ ++L  + ++ ++++++++k+ del++++++a+++  +++++  +l +e+++l++++ e++++++++ +e +e+k+e  ++   + e+++++ + ++a  +  +e+ +++ ee e++ +  eee +  e  ++ +e+ l k + + + + ++++++    + +  ++++  + +++l+ k+ + 
  MMETSP1137-20121227|10129_1 112 PLIKQYEEAQESLKEVREHHNNLYTQVKAKMAQQAEMKKEEDELRKEMDEAKAREDAKRSDFPALFKERDALRKEIGEIRDEQRKIRDEFNEAKKEFSAYLRAVREQKQQIWQAQQAERKAAEEKLRKEREEEEAKRDPWEEEKAICETLIKYVEKYLPKADAKAD-AADAKADADIPANMMVRKRDDDDDYLAALRSKKGKK 313
                  55677889999******************************************************************************************************99999999999999999999***************************995555.555555555556666666666666666666666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (357 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       700  (0.170648); expected 82.0 (0.02)
Passed bias filter:                      131  (0.0319356); expected 82.0 (0.02)
Passed Vit filter:                        27  (0.00658216); expected 4.1 (0.001)
Passed Fwd filter:                        13  (0.00316919); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.76u 0.21s 00:00:00.97 Elapsed: 00:00:00.86
# Mc/sec: 547.91
//
Query:       MMETSP1137-20121227|10130_1  [L=445]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-08   32.8   0.0    2.5e-08   32.0   0.0    1.3  1  TIGR00229 sensory_box: PAS domain S-box protein
     0.0008   15.8   0.0     0.0011   15.3   0.0    1.1  1  TIGR02938 nifL_nitrog: nitrogen fixation negative regulator NifL


Domain annotation for each model (and alignments):
>> TIGR00229  sensory_box: PAS domain S-box protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.0   0.0   1.2e-11   2.5e-08      20     111 ..      69     160 ..      58     167 .. 0.90

  Alignments for each domain:
  == domain 1    score: 32.0 bits;  conditional E-value: 1.2e-11
    TIGR00229  20 vvdeeGnilyvNrafeeifGYsaeeliGrnvlelipeedreevrerierrlegerepvseerrvkrkdGseiwvevsvspird.aggelgvvg 111
                  +v ++ +i+  N+a+e + GYsa e++++++++l  e    + ++r++++le+e +   +  ++ +kdG+ +  +++   +rd  g+ ++++ 
  MMETSP1137-20121227|10130_1  69 IVVHKDTIVACNQAWENLCGYSASEALKKSPQILQGELTDHAKAKRFKHELEEEGNASTTLCNY-SKDGTPFVHRIRAIAVRDhLGQDTYYFT 160
                  5667889**************************99999999999********999999999999.*****************99999988875 PP

>> TIGR02938  nifL_nitrog: nitrogen fixation negative regulator NifL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   5.5e-07    0.0011      18     112 ..      68     162 ..      57     197 .. 0.92

  Alignments for each domain:
  == domain 1    score: 15.3 bits;  conditional E-value: 5.5e-07
    TIGR02938  18 sitdlkanilyanaafseitGyakeeviGknesvlsnrttPpevyqalwgslaekkPwaGkllnrrkdgelylaeltvaPvlneaGetthflGmh 112
                  +i   k  i+  n+a++++ Gy+  e + k   +l  + t     + +   l e+   +  l n  kdg+ ++  +    v ++ G+ t+++ + 
  MMETSP1137-20121227|10130_1  68 AIVVHKDTIVACNQAWENLCGYSASEALKKSPQILQGELTDHAKAKRFKHELEEEGNASTTLCNYSKDGTPFVHRIRAIAVRDHLGQDTYYFTVG 162
                  56668999**********************************************************************************98765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (445 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       138  (0.0336421); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.31u 0.17s 00:00:00.48 Elapsed: 00:00:00.42
# Mc/sec: 1398.46
//
Query:       MMETSP1137-20121227|10131_1  [L=221]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (221 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       170  (0.0414432); expected 82.0 (0.02)
Passed bias filter:                      133  (0.0324232); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.13s 00:00:00.35 Elapsed: 00:00:00.34
# Mc/sec: 857.93
//
Query:       MMETSP1137-20121227|10132_1  [L=75]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (75 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        87  (0.0212092); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.28
# Mc/sec: 353.54
//
Query:       MMETSP1137-20121227|10134_1  [L=196]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (196 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       105  (0.0255973); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.14s 00:00:00.34 Elapsed: 00:00:00.31
# Mc/sec: 834.51
//
Query:       MMETSP1137-20121227|10135_1  [L=259]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.2e-95  318.7  10.3    1.4e-95  318.4   7.2    1.0  1  TIGR00065 ftsZ: cell division protein FtsZ


Domain annotation for each model (and alignments):
>> TIGR00065  ftsZ: cell division protein FtsZ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  318.4   7.2   3.5e-99   1.4e-95      67     324 ..       3     257 ..       2     259 .] 0.99

  Alignments for each domain:
  == domain 1    score: 318.4 bits;  conditional E-value: 3.5e-99
    TIGR00065  67 igkeltkGLGaGgnPeiGrkaAeeskdeikkllegadlvfitaGlGgGTGTGaaPvvakiakelgiLtvavvtkPfkfEgkkrrkkAeeGleeLkkavDslivipNdkllevvpk.lplkeafkvadevlvkavkgiselItkpglinvDFaDvravmskkGvaligigeakgedkakraeeavrkaisspllekakisgakgvlvnitggadltleeaeeiveiikseldqeanviwgasideeledelrvtvvatgv 324
                  +g+e+++GLGaGg P+ Gr+aAees d++ +++e++d+vf++aG+GgGTG GaaP+va+ ak +g+Ltv+vvtkPf+fEg++r+++A++ + +L+++vD++iv+ Nd+ll++v+  +pl+eaf vad++l+++v gis++I+kpglinvDFaDv+avm ++G al+gig+a+g+    ra +a+ +a+sspl++   i +a+g+++ itg++++tl+e++ ++e i + +d+ean+i+ga+id+ + + l +tvvatg+
  MMETSP1137-20121227|10135_1   3 LGAETSRGLGAGGSPDNGRAAAEESIDQLSQMVESSDMVFVVAGMGGGTGSGAAPIVAECAKAAGALTVGVVTKPFSFEGARRMRQADAAIAKLQSHVDAMIVVSNDRLLDLVEDgTPLQEAFCVADDILRQGVVGISDIIIKPGLINVDFADVQAVMGDSGLALMGIGTADGKT---RARDAAVAAVSSPLIDFP-IAQATGIVFTITGSSEMTLQEVNAAAEAIFEMADPEANIIFGAQIDDTMGGVLSITVVATGF 257
                  699***************************************************************************************************************************************************************************9...788*************99.*************************************************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (259 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       250  (0.0609459); expected 82.0 (0.02)
Passed bias filter:                      158  (0.0385178); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.24u 0.15s 00:00:00.39 Elapsed: 00:00:00.48
# Mc/sec: 712.19
//
Query:       MMETSP1137-20121227|10136_1  [L=287]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (287 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       226  (0.0550951); expected 82.0 (0.02)
Passed bias filter:                      119  (0.0290102); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.14s 00:00:00.41 Elapsed: 00:00:00.52
# Mc/sec: 728.48
//
Query:       MMETSP1137-20121227|10137_1  [L=304]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.2e-69  232.6   0.0    1.7e-69  232.1   0.0    1.1  1  TIGR00081 purC: phosphoribosylaminoimidazolesuccinocarboxamide synthase
    7.2e-27   91.9   0.0    1.5e-25   87.6   0.0    2.5  1  TIGR02735 purC_vibrio: phosphoribosylaminoimidazole-succinocarboxamide synthase


Domain annotation for each model (and alignments):
>> TIGR00081  purC: phosphoribosylaminoimidazolesuccinocarboxamide synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  232.1   0.0   8.4e-73   1.7e-69       8     271 ..      20     299 ..       6     303 .. 0.94

  Alignments for each domain:
  == domain 1    score: 232.1 bits;  conditional E-value: 8.4e-73
    TIGR00081   8 lysGkvkdlyeiddpellrlvfsdrisafdgekkdkieeKGrlltkisaflfekLe..................eagiethyleliedrkllvkkldliplEvivRniiagSllkrierteavpelkleeglveleqplvefifkd...devgdpllneseakalklvseeelealkelavkvnevlkrlvkekgiilvDfKlEfgldeegnlilvDevltPDtcRlwdketeeskellreydkkfvRdlleqegweavglpkldkdivrrtvgklieayetvvk 271
                  ++sGkv+dlye+d+++ll +v sdrisafd+++ + +++KG++l++++ f++++L                   e  +  + + ++++r++lvk+l++ p+E ivR++i+gS + ++ r ++v+++kl+egl +    l+e+ +++   +e gd+++n+   +a+ ++++ ++ea++++ v++++ ++ +++ +g++l+D+K+Efg+d++g+l+l+De+ tPD +R+w  + +e +  +++ydk++vR++l   ++++     l+++++++t++k+++ ++ ++ 
  MMETSP1137-20121227|10137_1  20 IASGKVRDLYEVDAEKLL-VVSSDRISAFDVIMTNGVPGKGKILSQLTVFWLQHLRdlgivpdhlitadvaqmpE--SCRRHAAILQGRSMLVKRLTMLPVEAIVRGYITGSGWNDYTRCGSVCGIKLPEGLSR-CARLPEPLYTPsskAEFGDHDENITVEQAAAALGA-HAEAVARVSVQLYKAVAAYAEPRGVMLADTKMEFGVDSSGELTLGDEIFTPDCSRYWPADKYELGRDQDSYDKQYVRNYLLSINFDKKTPLALPEEVIKQTIDKYVQIFKLLTD 299
                  89****************.***********************************************999766432..556778899**********************************************99.999*******99999*********98888888875.789**********************************************************************************7777778*****************99886 PP

>> TIGR02735  purC_vibrio: phosphoribosylaminoimidazole-succinocarboxamide synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.6   0.0   7.5e-29   1.5e-25      50     296 ..      31     269 ..      20     286 .. 0.79

  Alignments for each domain:
  == domain 1    score: 87.6 bits;  conditional E-value: 7.5e-29
    TIGR02735  50 edaelailvisdrisafdciwraegglkgvpgkgaalnaisnewfklfkeaglaeshildi.....p.....hplv.....wivqkakpvkieaiarqyitgslwrayakgerefcgielpeglekdqklpellitpstkgilegiegvaavddvnitrkdieenyealnfeqpedidhyekllkegfaviseeleklgqlfvdtkfefgyvtdaegkrkliymdevgtpdssriwdaaayrqgkiven.skegfrqlllnyv 296
                   dae  ++v sdrisafd+i       +gvpgkg  l  ++  w++ +++ g+   h++ +     p     h  +      +v++   + +eai+r yitgs w  y++   + cgi+lpegl++  +lpe l tps+k  +          d nit   +e+  +al+ + +e +    ++  + ++ ++   e  g ++ dtk+efg   d++g  +l   de+ tpd sr w a++y+ g+  +   k+  r++ll   
  MMETSP1137-20121227|10137_1  31 VDAEKLLVVSSDRISAFDVIMT-----NGVPGKGKILSQLTVFWLQHLRDLGIVPDHLITAdvaqmPescrrHAAIlqgrsMLVKRLTMLPVEAIVRGYITGSGWNDYTRCG-SVCGIKLPEGLSRCARLPEPLYTPSSKAEFG-------DHDENIT---VEQAAAALGAH-AEAVA---RVSVQLYKAVAAYAEPRGVMLADTKMEFGV--DSSG--ELTLGDEIFTPDCSRYWPADKYELGRDQDSyDKQYVRNYLLSIN 269
                  4899999999**********85.....8************************999998753222224333334444333335788899999******************986.68*************************8653.......3577998...67777778754.44454...455555667777788899**********95..5566..68889*******************99776514556677777654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (304 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       118  (0.0287665); expected 82.0 (0.02)
Passed bias filter:                      116  (0.0282789); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.29u 0.12s 00:00:00.41 Elapsed: 00:00:00.41
# Mc/sec: 978.65
//
Query:       MMETSP1137-20121227|10138_1  [L=186]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (186 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       149  (0.0363237); expected 82.0 (0.02)
Passed bias filter:                      102  (0.0248659); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.15s 00:00:00.35 Elapsed: 00:00:00.33
# Mc/sec: 743.94
//
Query:       MMETSP1137-20121227|10139_1  [L=102]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (102 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        36  (0.00877621); expected 82.0 (0.02)
Passed bias filter:                       34  (0.00828864); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.11s 00:00:00.25 Elapsed: 00:00:00.27
# Mc/sec: 498.63
//
Query:       MMETSP1137-20121227|10140_1  [L=408]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (408 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        75  (0.0182838); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.17s 00:00:00.45 Elapsed: 00:00:00.39
# Mc/sec: 1380.81
//
Query:       MMETSP1137-20121227|10141_1  [L=296]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (296 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        93  (0.0226719); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.17s 00:00:00.41 Elapsed: 00:00:00.37
# Mc/sec: 1055.91
//
Query:       MMETSP1137-20121227|10142_1  [L=196]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (196 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       166  (0.0404681); expected 82.0 (0.02)
Passed bias filter:                      135  (0.0329108); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.18s 00:00:00.39 Elapsed: 00:00:00.38
# Mc/sec: 680.79
//
Query:       MMETSP1137-20121227|10143_1  [L=289]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.7e-05   18.1   0.1    0.00056   14.2   0.0    1.9  2  TIGR00864 PCC: polycystin cation channel protein


Domain annotation for each model (and alignments):
>> TIGR00864  PCC: polycystin cation channel protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.0   1.4e-07   0.00056     311     405 ..      87     180 ..      84     226 .. 0.76
   2 !    2.4   0.0   0.00047       1.9     313     377 ..     222     286 ..     218     289 .] 0.82

  Alignments for each domain:
  == domain 1    score: 14.2 bits;  conditional E-value: 1.4e-07
    TIGR00864 311 yrlvveklawldarkqcldraadlaivdsdalrrllvrkvtrslergvwlGlsdvnsveklhqveaseleeg.eeglagessvaraelcvrldqrs 405
                  y++  ++ +w da + c + ++ la v+s   +  l   + + +    wlG+sdv s +k +++   ++  g +++ + +++  r  +c  +++  
  MMETSP1137-20121227|10143_1  87 YKVFLQRRTWHDALQYCWSLGGVLAEVHSREQNLELQAMMPNGFR--TWLGMSDVLSEGKWRWTSRPDVPLGyQNWQPNQPNDWRYXHCAYIERLD 180
                  8899999*********************99876667777788887..9*****************999987659***************8654432 PP

  == domain 2    score: 2.4 bits;  conditional E-value: 0.00047
    TIGR00864 313 lvveklawldarkqcldraadlaivdsdalrrllvrkvtrslergvwlGlsdvnsveklhqveas 377
                  +    ++w  a  +c + +++la +ds+  +  l   ++   +   w+Glsd    +  +++++ 
  MMETSP1137-20121227|10143_1 222 VFDTPATWHSALTRCESMGGSLARIDSKEHNAELQALIAAEGHLKAWIGLSDEFFEGDFRWTDGN 286
                  5566789********************9998888888888877789*****97777777776665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (289 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        54  (0.0131643); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.19s 00:00:00.53 Elapsed: 00:00:00.39
# Mc/sec: 978.07
//
Query:       MMETSP1137-20121227|10144_1  [L=180]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (180 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       183  (0.0446124); expected 82.0 (0.02)
Passed bias filter:                      144  (0.0351048); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.14s 00:00:00.35 Elapsed: 00:00:00.79
# Mc/sec: 300.73
//
Query:       MMETSP1137-20121227|10146_1  [L=803]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (803 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       281  (0.0685032); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.58u 0.17s 00:00:00.75 Elapsed: 00:00:00.44
# Mc/sec: 2408.80
//
Query:       MMETSP1137-20121227|10147_1  [L=91]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (91 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       112  (0.0273038); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.15s 00:00:00.28 Elapsed: 00:00:00.28
# Mc/sec: 414.17
//
Query:       MMETSP1137-20121227|10148_1  [L=487]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (487 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        77  (0.0187713); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.14s 00:00:00.47 Elapsed: 00:00:00.47
# Mc/sec: 1367.63
//
Query:       MMETSP1137-20121227|10149_1  [L=132]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (132 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       116  (0.0282789); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.13s 00:00:00.28 Elapsed: 00:00:00.28
# Mc/sec: 622.23
//
Query:       MMETSP1137-20121227|10150_1  [L=214]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (214 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       175  (0.0426621); expected 82.0 (0.02)
Passed bias filter:                      133  (0.0324232); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.17s 00:00:00.40 Elapsed: 00:00:00.40
# Mc/sec: 706.14
//
Query:       MMETSP1137-20121227|10151_1  [L=81]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (81 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       162  (0.0394929); expected 82.0 (0.02)
Passed bias filter:                      144  (0.0351048); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:00.28
# Mc/sec: 381.83
//
Query:       MMETSP1137-20121227|10152_1  [L=539]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (539 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       100  (0.0243784); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.17s 00:00:00.53 Elapsed: 00:00:00.38
# Mc/sec: 1872.16
//
Query:       MMETSP1137-20121227|10153_1  [L=144]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (144 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       113  (0.0275475); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.16s 00:00:00.32 Elapsed: 00:00:00.25
# Mc/sec: 760.26
//
Query:       MMETSP1137-20121227|10154_1  [L=250]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.3e-09   33.7   0.7    6.8e-09   33.4   0.5    1.1  1  TIGR02349 DnaJ_bact: chaperone protein DnaJ
    1.4e-05   21.5   0.0    2.1e-05   20.9   0.0    1.1  1  TIGR03835 termin_org_DnaJ: terminal organelle assembly protein TopJ


Domain annotation for each model (and alignments):
>> TIGR02349  DnaJ_bact: chaperone protein DnaJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.4   0.5   3.3e-12   6.8e-09      14      86 ..      33     105 ..      29     164 .. 0.70

  Alignments for each domain:
  == domain 1    score: 33.4 bits;  conditional E-value: 3.3e-12
    TIGR02349  14 eeeikkAYrklakkyHPDrnkgekeaeekfkeineAyevLsde.ekraqYDqfghagleggaggggagfegfea 86 
                  ++ +++A+rk a   HPD++k +  aee f+   eA+e L+++ + r++YD+ ++ + +  a+++ ++ +   +
  MMETSP1137-20121227|10154_1  33 TSSVRSAFRKRALVVHPDKCK-HSLAEEAFRALVEAFESLHNPvNLRRAYDERTKTDEKPPAKRARKQSSRAAR 105
                  67899****************.999*****************9456******9999988876663333333222 PP

>> TIGR03835  termin_org_DnaJ: terminal organelle assembly protein TopJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   0.0     1e-08   2.1e-05      17      64 ..      34      82 ..      30      86 .. 0.89

  Alignments for each domain:
  == domain 1    score: 20.9 bits;  conditional E-value: 1e-08
    TIGR03835 17 qeikkafrkLakkyhPDrnkaadaakifaeineandvLsnPkk.raryD 64
                 + ++ afrk a   hPD+ k + a++ f+ + ea++ L nP   r  yD
  MMETSP1137-20121227|10154_1 34 SSVRSAFRKRALVVHPDKCKHSLAEEAFRALVEAFESLHNPVNlRRAYD 82
                 67899************************************64377787 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (250 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       122  (0.0297416); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.22u 0.12s 00:00:00.34 Elapsed: 00:00:00.38
# Mc/sec: 868.35
//
Query:       MMETSP1137-20121227|10155_1  [L=478]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (478 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       152  (0.0370551); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.15s 00:00:00.49 Elapsed: 00:00:00.42
# Mc/sec: 1502.16
//
Query:       MMETSP1137-20121227|10156_1  [L=122]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.5e-10   37.7   8.9    4.6e-10   37.3   6.2    1.1  1  TIGR02338 gimC_beta: prefoldin, beta subunit
      0.002   16.1  12.4      0.032   12.2   8.6    1.9  1  TIGR00293 TIGR00293: prefoldin, alpha subunit


Domain annotation for each model (and alignments):
>> TIGR02338  gimC_beta: prefoldin, beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.3   6.2   2.3e-13   4.6e-10       7     107 ..      18     118 ..      14     121 .. 0.87

  Alignments for each domain:
  == domain 1    score: 37.3 bits;  conditional E-value: 2.3e-13
    TIGR02338   7 eqlaqlqqlqqqlqavltqkqqveaelkevekaLeelekleddtkvYksvGnllvktdkeevleeLeekketlelrvktlekQeerlrekleelqekiqea 107
                    la    +q q++++ + ++++ + + e e +L+ele le+d++v+k +G +lvk++  ev+++ + + e ++  +k le Q +  ++  ee++++i ++
  MMETSP1137-20121227|10156_1  18 PLLASYRTVQGQISKIQQGQSKATTLVCENELVLKELELLEEDAQVFKLIGPVLVKQELVEVKNNVSKRIEYINSDMKRLEGQLKAKSKEQEEIRQQISKL 118
                  56888899*************************************************************99988888888777776666667777766654 PP

>> TIGR00293  TIGR00293: prefoldin, alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.2   8.6   1.5e-05     0.032      27     128 ..      18     120 ..      16     121 .. 0.93

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 1.5e-05
    TIGR00293  27 aliaeleeaietleslkka.egkevLVpvgaglyvkakvkdadkvlVsiGagyyvekdleeAieilkkkieelekaieklqeelqelaseaqeieqelqqkqq 128
                   l+a++++++  +++++++  ++++LV   + +  + ++ ++d  + ++   + v+++l e ++ + k+ie +++ ++ l+ +l+ +++e +ei+q+++++q+
  MMETSP1137-20121227|10156_1  18 PLLASYRTVQGQISKIQQGqSKATTLVCENELVLKELELLEEDAQVFKLIGPVLVKQELVEVKNNVSKRIEYINSDMKRLEGQLKAKSKEQEEIRQQISKLQK 120
                  567899999999999999977788999999999999999999*99***999************************************************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (122 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       346  (0.0843491); expected 82.0 (0.02)
Passed bias filter:                      194  (0.047294); expected 82.0 (0.02)
Passed Vit filter:                        25  (0.00609459); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.21u 0.17s 00:00:00.38 Elapsed: 00:00:00.28
# Mc/sec: 555.26
//
Query:       MMETSP1137-20121227|10157_1  [L=240]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (240 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        84  (0.0204778); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.16s 00:00:00.39 Elapsed: 00:00:00.34
# Mc/sec: 931.69
//
Query:       MMETSP1137-20121227|10158_1  [L=334]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      4e-14   50.8   1.1      7e-14   50.0   0.0    1.9  2  TIGR01416 Rieske_proteo: ubiquinol-cytochrome c reductase, iron-sulfur subunit
    0.00039   18.2   0.0    0.00065   17.4   0.0    1.3  1  TIGR02694 arsenite_ox_S: arsenite oxidase, small subunit


Domain annotation for each model (and alignments):
>> TIGR01416  Rieske_proteo: ubiquinol-cytochrome c reductase, iron-sulfur subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.3      0.26   5.4e+02     103     124 ..      93     114 ..      56     146 .. 0.67
   2 !   50.0   0.0   3.4e-17     7e-14     113     174 ..     265     322 ..     242     324 .. 0.84

  Alignments for each domain:
  == domain 1    score: -1.7 bits;  conditional E-value: 0.26
    TIGR01416 103 rsgkeewlvvigiCtHLGCiPt 124
                  rs +++ + + ++ tH++  P+
  MMETSP1137-20121227|10158_1  93 RSFNSARCRMRRVTTHMCACPR 114
                  4555555667788899998884 PP

  == domain 2    score: 50.0 bits;  conditional E-value: 3.4e-17
    TIGR01416 113 igiCtHLGCiPtlkpeegdkggffCpCHgskydlagrvvkgvPaPenlavPpykfesdtkil 174
                   + CtHLGC  ++       ggf CpCHgs+y ++g v +g PaP  l + + ++++d +++
  MMETSP1137-20121227|10158_1 265 RAECTHLGCLVAVD---PGSGGFSCPCHGSRYAADGGVLRG-PAPASLRLARVSVREDAVLV 322
                  567*******9777...34589*******************.*******9999999988776 PP

>> TIGR02694  arsenite_ox_S: arsenite oxidase, small subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.0   3.2e-07   0.00065      52      86 ..     262     296 ..     234     320 .. 0.74

  Alignments for each domain:
  == domain 1    score: 17.4 bits;  conditional E-value: 3.2e-07
    TIGR02694  52 vafsilcthkGcpvsyeadaktfkcpchfsvfdpe 86 
                   a  + cth Gc v  +  ++ f cpch s +  +
  MMETSP1137-20121227|10158_1 262 FALRAECTHLGCLVAVDPGSGGFSCPCHGSRYAAD 296
                  566778**********************9988665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (334 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        91  (0.0221843); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.24u 0.14s 00:00:00.38 Elapsed: 00:00:00.39
# Mc/sec: 1130.37
//
Query:       MMETSP1137-20121227|10159_1  [L=574]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (574 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       564  (0.137494); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                        20  (0.00487567); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.17s 00:00:00.61 Elapsed: 00:00:00.81
# Mc/sec: 935.33
//
Query:       MMETSP1137-20121227|10161_1  [L=73]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (73 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       148  (0.03608); expected 82.0 (0.02)
Passed bias filter:                      122  (0.0297416); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.32
# Mc/sec: 301.10
//
Query:       MMETSP1137-20121227|10162_1  [L=402]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (402 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       126  (0.0307167); expected 82.0 (0.02)
Passed bias filter:                       97  (0.023647); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.12s 00:00:00.43 Elapsed: 00:00:00.44
# Mc/sec: 1205.90
//
Query:       MMETSP1137-20121227|10163_1  [L=395]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (395 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       133  (0.0324232); expected 82.0 (0.02)
Passed bias filter:                       96  (0.0234032); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.13s 00:00:00.42 Elapsed: 00:00:00.50
# Mc/sec: 1042.71
//
Query:       MMETSP1137-20121227|10165_1  [L=145]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (145 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        28  (0.00682594); expected 82.0 (0.02)
Passed bias filter:                       28  (0.00682594); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.13s 00:00:00.28 Elapsed: 00:00:00.28
# Mc/sec: 659.95
//
Query:       MMETSP1137-20121227|10166_1  [L=550]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   4.7e-255  844.8   5.4   5.5e-255  844.6   3.7    1.0  1  TIGR02344 chap_CCT_gamma: T-complex protein 1, gamma subunit
     1e-148  494.2   4.1   1.2e-148  494.0   2.9    1.0  1  TIGR02339 thermosome_arch: thermosome, various subunits, archaeal
     9e-118  391.6   2.0   1.1e-117  391.4   1.4    1.0  1  TIGR02345 chap_CCT_eta: T-complex protein 1, eta subunit
   1.9e-104  348.1   4.1   2.3e-104  347.7   2.8    1.0  1  TIGR02343 chap_CCT_epsi: T-complex protein 1, epsilon subunit
   6.5e-103  343.1   4.5   7.9e-103  342.8   3.1    1.0  1  TIGR02340 chap_CCT_alpha: T-complex protein 1, alpha subunit
   3.3e-102  340.5   3.7   4.1e-102  340.2   2.5    1.0  1  TIGR02342 chap_CCT_delta: T-complex protein 1, delta subunit
    9.9e-95  315.8   2.3    1.3e-94  315.4   1.6    1.0  1  TIGR02346 chap_CCT_theta: T-complex protein 1, theta subunit
    2.8e-82  274.8   3.7    3.4e-82  274.5   2.5    1.0  1  TIGR02347 chap_CCT_zeta: T-complex protein 1, zeta subunit
    3.6e-77  258.0   4.5    4.5e-77  257.6   3.1    1.0  1  TIGR02341 chap_CCT_beta: T-complex protein 1, beta subunit
    2.5e-15   53.8   2.5      1e-07   28.7   0.0    2.7  3  TIGR02348 GroEL: chaperonin GroL


Domain annotation for each model (and alignments):
>> TIGR02344  chap_CCT_gamma: T-complex protein 1, gamma subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  844.6   3.7  1.3e-257  5.5e-255       1     526 []      15     534 ..      15     534 .. 0.99

  Alignments for each domain:
  == domain 1    score: 844.6 bits;  conditional E-value: 1.3e-257
    TIGR02344   1 pvlvlnqntkresGrkaqlsniqaakavadiirttlGpkamlkmlldplGgivltndGnailreidvahpaakslielsrtqdeevGdGttsviilaGellaaaepfleknihptvivraykkaledalkvleelsipvdvedeakllklvkssigtkfvsrwsdlvvdlaldavktvkleerngrklevdikryakvekipGGeiedsavlkGvllnkdvthpkmrrkienprivlldcpleykkgesqtnveilkeedwnrllqleeeevkklceeiiavkpdlvitekGvsdlaqhyllkanisairrvrktdnnriarvsGativnrveelkesdvGtgaGlfevkkiGdeyftflteckdpkactillrGaskdvlnevernlqdalavarnvllepklvpGGGatelavsvklkkkakklegveqlpyeavadaleviprtlvqncGvnvirtltelrakhaqeekkalGidGetGkivdmkekgiweplavklqtiktaiesavlllriddivsGvkkk 526
                  p++v++q+ +re+Grkaqlsni a+kav+di+rttlGp++mlkmlldp+Ggiv+tndGn+ilre+dv+hpaaks+ielsr+    vGdGttsvi+laGe l  aep+ ++++hpt+i+++y kal+da+k+l+ ++ p+d++d+a+l klv+s+ gtkfvsr+s ++v lal+avktv  e+  grk e+dikryakvekipGG+ieds+vlkGv++nkd++h+kmrrki npr++lldc+leykk es t +e+++++ w++ll++eee +k++c +iia   d+v+tekGvsdlaqhyl+kanis irrvrktdnnriar++Gativ rv e++ +d+Gt++Glfev ++Gde+ftf+++c++pkac+i+lrGaskdvlnevernl da++  r ++l+p+l+pGGGate+a +++l++++k++e      y+a++ aleviprtl++ncG+++ir lt+lrakha++ ++++GidGe+G + dm++ g+wep++vk qt+kt++e+a++llrid+ivsG++k+
  MMETSP1137-20121227|10166_1  15 PIMVMDQKVQRETGRKAQLSNIAAGKAVSDIVRTTLGPRSMLKMLLDPMGGIVMTNDGNSILREVDVSHPAAKSMIELSRA----VGDGTTSVIVLAGEYLRLAEPLFDRHLHPTIICNGYLKALDDAIKFLDTIAKPLDINDTAELSKLVQSCTGTKFVSRFSTMMVTLALEAVKTVYIED-GGRK-ELDIKRYAKVEKIPGGNIEDSRVLKGVMMNKDLVHAKMRRKISNPRVLLLDCTLEYKKNESATSIEMTDDKAWEELLRIEEEAIKEMCGDIIAAGVDVVVTEKGVSDLAQHYLVKANISCIRRVRKTDNNRIARACGATIVHRVSEIQPKDIGTRCGLFEVSQVGDEFFTFFVDCEQPKACSIVLRGASKDVLNEVERNLGDAMNALRTIYLDPRLLPGGGATEMALAHHLADNSKRVEPTIANAYRAAGAALEVIPRTLLENCGADIIRVLTQLRAKHAHGANATWGIDGEKGVLADMETLGVWEPFSVKIQTLKTSVETASMLLRIDEIVSGTHKR 534
                  89******************************************************************************7....9***********************************************************************************************9.7787.9*********************************************************************************************************************************************************************************************************************************************************************************************************************************************9985 PP

>> TIGR02339  thermosome_arch: thermosome, various subunits, archaeal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  494.0   2.9  2.9e-151  1.2e-148       1     519 [.      15     529 ..      15     531 .. 0.98

  Alignments for each domain:
  == domain 1    score: 494.0 bits;  conditional E-value: 2.9e-151
    TIGR02339   1 pvlilkegtqrtkgrdalksniaaakavaeavkstlGPrGlDkmLvdslGdvtitnDGatilkemdiehPaakllvevaktqdeevgDGtttavvlaGeLlekaedLleqdihPtviveGyrkaaekalevideiaekidvedkellkkvaetsltskavaeeakdklaelvveavkqvvekredgkykvdldn.ikiekkkGgsiedtelveGivvDkevvhegmPkrvenakialldaplevekteidaklkitspdqlkkfldqeeallkemvdkiadaGanvvicqkgiDdlaqhylakkGilavrrvkksDieklaratGakivsslkeieesdLGea.elveerkvgedklvfvegaknakavtillrGgtehvvdeleRaleDalkvvksvledgkvvaGgGavevelakrlreyaakieGreqlaveafadaleeiprilaenaGldpidalvelRakhekegnknagvdvftgeiedmlelgvieplkvkeqaiksateaatlilriDdvia 519
                  p++++++  qr++gr+a+ sniaa+kav+++v++tlGPr + kmL+d++G +++tnDG  il+e+d+ hPaak ++e +++    vgDGtt+++vlaGe l+ ae L+++++hPt+i +Gy ka + a + +d+ia+ +d +d+  l k++++   +k+v ++   +++ l++eavk+v  ++ +g+ ++d+++  k+ek  Gg+ied+++++G++++k+ vh +m ++++n++++lld +le +k e  + +++t+ +  ++ l  ee+++kem   i++aG++vv+++kg+ dlaqhyl k+ i  +rrv+k D +++ara+Ga iv  ++ei+++d+G++ +l e ++vg++  +f  +++++ka +i+lrG ++ v++e+eR l Da+++++++  d+++++GgGa+e++la++l + ++++e     a +a   ale ipr+l en G d i +l++lRakh++++n++ g+d  +g ++dm  lgv+ep  vk q++k+++e+a ++lriD++++
  MMETSP1137-20121227|10166_1  15 PIMVMDQKVQRETGRKAQLSNIAAGKAVSDIVRTTLGPRSMLKMLLDPMGGIVMTNDGNSILREVDVSHPAAKSMIELSRA----VGDGTTSVIVLAGEYLRLAEPLFDRHLHPTIICNGYLKALDDAIKFLDTIAKPLDINDTAELSKLVQSCTGTKFV-SRFSTMMVTLALEAVKTVYIED-GGRKELDIKRyAKVEKIPGGNIEDSRVLKGVMMNKDLVHAKMRRKISNPRVLLLDCTLEYKKNESATSIEMTDDKAWEELLRIEEEAIKEMCGDIIAAGVDVVVTEKGVSDLAQHYLVKANISCIRRVRKTDNNRIARACGATIVHRVSEIQPKDIGTRcGLFEVSQVGDEFFTFFVDCEQPKACSIVLRGASKDVLNEVERNLGDAMNALRTIYLDPRLLPGGGATEMALAHHLADNSKRVEPTIANAYRAAGAALEVIPRTLLENCGADIIRVLTQLRAKHAHGANATWGIDGEKGVLADMETLGVWEPFSVKIQTLKTSVETASMLLRIDEIVS 529
                  89***************************************************************************9986....9**************************************************************************.69999**********9999997.999****997379************************************************************************************************************************************************853899***************************************************************************************************************************************************************************986 PP

>> TIGR02345  chap_CCT_eta: T-complex protein 1, eta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  391.4   1.4  2.7e-120  1.1e-117       3     519 ..      15     529 ..      13     533 .. 0.95

  Alignments for each domain:
  == domain 1    score: 391.4 bits;  conditional E-value: 2.7e-120
    TIGR02345   3 tivllkegtdtsqGkgqlisninacvaiaeilkttlGPrGmdklivskek.avvsndGatilklldivhPaakllvdiaksqdsevGdGttsvvvlagellkeakplieeglhpqliiralrealklaieklkeiaveldeeksekrevleklaatalsskliaeekeffskmvvdavlsldkddldkk......liGvkkvkGGaledsvlvkGvafkktfsyaGfeqqPkkfanPkilllnvelelkaekdnaeirvedvedykeivdaewkiileklekivesGanvvlsklsiGdlatqyfadrdifcaGrvsdedlkrvvkatGasilsavsdleadvlGk.calfeekqiGserynlftggekakactlilrGgaeqfleeaerslhdaimivrralkakkivaGGGaielelskllrekskkidgkqqliieavakaleviPrslaenaGfdsieilnklrkkhakkgekwaGvdieteeildaleafvwePllvkknalkaateaaatilsvdetik 519
                  +i+++ + +    G++  +sni a +a+++i++ttlGPr m k++ +     v++ndG  il+++d+ hPaak +++++++    vGdGttsv+vlage l+ a pl +  lhp +i++++ +al  ai++l+ ia  ld    +    l kl + +  +k +++   +++ + ++av+++ ++d  +k         v k+ GG +eds ++kGv ++k + +a   +  +k++nP++lll+  le+k ++  + i ++d + ++e++  e + i e   +i+++G +vv++++ + dla  y+ + +i c  rv + d +r+++a+Ga+i+  vs+++ + +G+ c+lfe  q+G e + +f ++e+ kac ++lrG+++++l+e+er l da+  +r+   + ++++GGGa+e+ l+++l ++sk+++       +a + aleviPr+l en G d i++l +lr+kha+  +++ G+d e+  ++d+    vweP  vk+ +lk+++e+a+++l +de + 
  MMETSP1137-20121227|10166_1  15 PIMVMDQKVQRETGRKAQLSNIAAGKAVSDIVRTTLGPRSMLKMLLDPMGgIVMTNDGNSILREVDVSHPAAKSMIELSRA----VGDGTTSVIVLAGEYLRLAEPLFDRHLHPTIICNGYLKALDDAIKFLDTIAKPLDI---NDTAELSKLVQSCTGTKFVSRFSTMMVTLALEAVKTVYIEDGGRKeldikrYAKVEKIPGGNIEDSRVLKGVMMNKDLVHA---KMRRKISNPRVLLLDCTLEYKKNESATSIEMTDDKAWEELLRIEEEAIKEMCGDIIAAGVDVVVTEKGVSDLAQHYLVKANISCIRRVRKTDNNRIARACGATIVHRVSEIQPKDIGTrCGLFEVSQVGDEFFTFFVDCEQPKACSIVLRGASKDVLNEVERNLGDAMNALRTIYLDPRLLPGGGATEMALAHHLADNSKRVEPTIANAYRAAGAALEVIPRTLLENCGADIIRVLTQLRAKHAHGANATWGIDGEKGVLADMETLGVWEPFSVKIQTLKTSVETASMLLRIDEIVS 529
                  6889999999*****999************************999988775889*************************97....9***************************************************9994...33457999999999***********************999988883333334455689*******************9988...56789****************************************************************************************************************99******************************************************************************************************************************999999*******************************************986 PP

>> TIGR02343  chap_CCT_epsi: T-complex protein 1, epsilon subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  347.7   2.8  5.7e-107  2.3e-104       6     530 ..      11     529 ..       7     531 .. 0.95

  Alignments for each domain:
  == domain 1    score: 347.7 bits;  conditional E-value: 5.7e-107
    TIGR02343   6 elGrpfiiikdqdkkkrlkGleakksniaaakavasilrtslGpkGldkiliskdgditvtndGatilekmdldeeiakllvelsksqdeeiGdGttgvvvlasalleqaeklldkGihpikiaeGfekaakvavekleeiaeeisvdednketllkaaktslgskivskskrrlaeiavdavlav..adlerkdvdfd.likvegkvGgsledtklikGilidkdlshpqmkkevkdakiailtcpfeppkpktkhkldissveeykklekyekekfeemiddikksGanlvicqwGfddeanhlllqndlpavrwvgGkeleliaiatgGrivprfeelseeklGk.aklvreksfGttkdrllvieqskeskavtilvrGgnkliieeakrslhdalcvvrnlikdsrivyGGGaaeiacslaveeeadklsgveqyairafaealeeiplalaensGldpietlsevkakqlkeknpalGvdcleeGtndmkelkvletligkkqqillatqlvkmilkiddvis 530
                   +G p +++  ++k +r  G +a+ sniaa+kav+ i+rt+lGp+ + k+l+++ g i++tndG +il+++d+ ++ ak ++els++    +GdGtt+v+vla+  l  ae l+d+ +hp  i++G+ ka++ a++ l+ ia+ +++  +++ +l k ++++ g+k vs+    +  +a +av +v   d  rk++d++   kve+  Gg++ed++++kG++++kdl h +m++++ + ++ +l c +e  k  +  +++++  + +++l + e+e  +em  di  +G ++v+ + G  d a h l+++++  +r v  ++ + ia a g  iv r +e++ +++G+ ++l +  ++G   + + +  ++++ ka +i++rG++k +++e +r l da+ ++r +  d r++ GGGa+e+a++  + +++++++    +a ra + ale ip +l en G d i +l++++ak  +  n++ G+d ++    dm  l v e+++ k+q ++ + +   m+l+id+++s
  MMETSP1137-20121227|10166_1  11 RMGAPIMVM--DQKVQRETGRKAQLSNIAAGKAVSDIVRTTLGPRSMLKMLLDPMGGIVMTNDGNSILREVDVSHPAAKSMIELSRA----VGDGTTSVIVLAGEYLRLAEPLFDRHLHPTIICNGYLKALDDAIKFLDTIAKPLDI--NDTAELSKLVQSCTGTKFVSRFSTMMVTLALEAVKTVyiEDGGRKELDIKrYAKVEKIPGGNIEDSRVLKGVMMNKDLVHAKMRRKISNPRVLLLDCTLEYKKNESATSIEMTDDKAWEELLRIEEEAIKEMCGDIIAAGVDVVVTEKGVSDLAQHYLVKANISCIRRVRKTDNNRIARACGATIVHRVSEIQPKDIGTrCGLFEVSQVGD--EFFTFFVDCEQPKACSIVLRGASKDVLNEVERNLGDAMNALRTIYLDPRLLPGGGATEMALAHHLADNSKRVEPTIANAYRAAGAALEVIPRTLLENCGADIIRVLTQLRAKHAHGANATWGIDGEKGVLADMETLGVWEPFSVKIQTLKTSVETASMLLRIDEIVS 529
                  578888887..456789********************************************************************96....9****************************************************998..667778888888889*******************776226999*****97367999999*******************************************************************************************************************************************7366666667775..45666779****************************************************************9999***************************************************9*************************************97 PP

>> TIGR02340  chap_CCT_alpha: T-complex protein 1, alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  342.8   3.1  1.9e-105  7.9e-103       6     533 ..      24     534 ..      19     538 .. 0.95

  Alignments for each domain:
  == domain 1    score: 342.8 bits;  conditional E-value: 1.9e-105
    TIGR02340   6 erksGedvrkqnvlavvavanivktslGPvGldkmlvddvGdvtitndGatilkklevehPaakvlvelaqlqdkevGdGttsvvilaaellkradelvkrkvhPtsvisGyrlalkeavkyikeklavsveelgkealinvaktslsskiislesdlfsnlvvdavlavkvtnekgetkyPika.vnilkahGksaresllvkGyalnctvasqqmpkrvkkakialldfnlqkaklklgvqivvedpeklekirkreadivkerikkilkaGanvvlttkGiddlalkylveagvmavrrvkkedlkriakatGatlvssladleGeetleasllGeaeevveeriaddelilikgtkkkksasiilrGandvlldemerslhdalcvvkrtleskkvvaGgGaveaalsiyleelattlgsreqlaiaefaealliiPkvlavnaakdstelvaklralhaaaqlkeekkklkflGldlsngkirdnveaGvlePavskvkslkfateaaitilriddliklkpee 533
                  +r++G++++  n+ a  av++iv+t+lGP  + kml+d +G +++tndG  il++++v hPaak ++el+    + vGdGttsv++la e l+ a+ l +r++hPt++ +Gy  al +a+k+++ ++a+  +    + l  +++    +k +s  s ++  l+++av++v +++   +++  ik   ++ k +G+  ++s ++kG  +n  +   +m++++++++++lld +l+ +k++ +++i ++d +  e++ + e + +ke +  i++aG +vv+t kG+ dla+ ylv a++ ++rrv+k+d +ria+a Gat+v  +++++ ++         +  ++  +++d+   ++ + ++ k++si+lrGa + +l+e+er l da+ +++ +    ++++GgGa e+al+  l + ++ ++     a  +  +al +iP++l  n++ d   ++++lra ha+            +G+d ++g+++d   +Gv eP   k+++lk+++e+a  +lrid+++  ++++
  MMETSP1137-20121227|10166_1  24 QRETGRKAQLSNIAAGKAVSDIVRTTLGPRSMLKMLLDPMGGIVMTNDGNSILREVDVSHPAAKSMIELS----RAVGDGTTSVIVLAGEYLRLAEPLFDRHLHPTIICNGYLKALDDAIKFLD-TIAKPLDINDTAELSKLVQSCTGTKFVSRFSTMMVTLALEAVKTVYIEDGG-RKELDIKRyAKVEKIPGGNIEDSRVLKGVMMNKDLVHAKMRRKISNPRVLLLDCTLEYKKNESATSIEMTDDKAWEELLRIEEEAIKEMCGDIIAAGVDVVVTEKGVSDLAQHYLVKANISCIRRVRKTDNNRIARACGATIVHRVSEIQPKDIGT-----RCGLFEVSQVGDEFFTFFVDCEQPKACSIVLRGASKDVLNEVERNLGDAMNALRTIYLDPRLLPGGGATEMALAHHLADNSKRVEPTIANAYRAAGAALEVIPRTLLENCGADIIRVLTQLRAKHAHGAN-------ATWGIDGEKGVLADMETLGVWEPFSVKIQTLKTSVETASMLLRIDEIVSGTHKR 534
                  789******************************************************************8....68**********************************************95.6888888888999********************************999865.5556666527999**************************************************************************************************************************************999887544.....477788899*******************************************************************************************************************998654.......469********************************************9865554 PP

>> TIGR02342  chap_CCT_delta: T-complex protein 1, delta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  340.2   2.5    1e-104  4.1e-102       4     515 ..      25     529 ..      22     531 .. 0.95

  Alignments for each domain:
  == domain 1    score: 340.2 bits;  conditional E-value: 1e-104
    TIGR02342   4 kekpedvrtsnivaakavadairtslGpkGmdkliqekkGeviitndGatilkqlevlhpaakllvelskaqdieaGdGttsvvvlaGalldaaekllekgihptiisesfqsaadealkilkelsipvdlsdrealiksattslsskvvsqyssllaplavdavlkv.idsekdknvdlkdikvvkkl.GgtiddtelieGvvltqkasksaggptriekakigliqfqlsapktdmenqvvvsdyaqmdrvlkeerkyilnlvkkikkaganvlliqksilrdavndlalhflakkkilvvkdiereevefisktlGckpvasidkltadklGkaelveevksddskivkitGvknagktvsvlvrGsnklvideaerslhdalcvirslvkkraliaGGGapeieialklskkarelkGvesyivrafadalevipytlaenaGlnpikvvtelrnrhaqG.ektaGisvrkggitdileeevlqpllvtksavtlasetvrsilkiddivl 515
                  +e  ++ + sni a kav+d++rt+lGp+ m k++ +  G +++tndG++il++++v hpaak ++els+a     GdGttsv+vlaG +l  ae l+++ +hptii++++ +a+d+a+k l+ +++p+d++d + l k ++++  +k vs++s+++  la +av+ v i+    k+ d+k    v+k+ Gg i+d+ +++Gv++++  ++ a   ++i + ++ l+  +l   k +   ++ ++d ++ + +l+ e + i +++  i +ag++v++  k      v+dla h+l k +i +++ + + + + i+++ G++ v  + +++++ +G+     ev++ + +        ++ k+ s+++rG+ k v++e er l da+  +r++  +  l++GGGa e+ +a +l+++++ ++ + +  +ra   alevip tl en G + i+v+t+lr +ha+G + t Gi+ +kg  +d+ +  v  p+ v+  +++ + et  ++l+id+iv 
  MMETSP1137-20121227|10166_1  25 RETGRKAQLSNIAAGKAVSDIVRTTLGPRSMLKMLLDPMGGIVMTNDGNSILREVDVSHPAAKSMIELSRA----VGDGTTSVIVLAGEYLRLAEPLFDRHLHPTIICNGYLKALDDAIKFLDTIAKPLDINDTAELSKLVQSCTGTKFVSRFSTMMVTLALEAVKTVyIEDGGRKELDIKRYAKVEKIpGGNIEDSRVLKGVMMNKDLVH-AKMRRKISNPRVLLLDCTLEYKKNESATSIEMTDDKAWEELLRIEEEAIKEMCGDIIAAGVDVVVTEKG-----VSDLAQHYLVKANISCIRRVRKTDNNRIARACGATIVHRVSEIQPKDIGTRCGLFEVSQVGDEFFTFFVDCEQPKACSIVLRGASKDVLNEVERNLGDAMNALRTIYLDPRLLPGGGATEMALAHHLADNSKRVEPTIANAYRAAGAALEVIPRTLLENCGADIIRVLTQLRAKHAHGaNATWGIDGEKGVLADMETLGVWEPFSVKIQTLKTSVETASMLLRIDEIVS 529
                  566677889************************************************************98....7*****************************************************************************************998445557899***988777776599**************99997.77899***********************************************************99986.....79***********************************************998888898866666666655567799*****************************************************************************************************934578********************************************96 PP

>> TIGR02346  chap_CCT_theta: T-complex protein 1, theta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  315.4   1.6   3.1e-97   1.3e-94      19     518 ..      31     529 ..      17     544 .. 0.93

  Alignments for each domain:
  == domain 1    score: 315.4 bits;  conditional E-value: 3.1e-97
    TIGR02346  19 avlknieaikelseitrtslGPngmnklvinhleklfvtnDaatilrelevqhPaakllvlaskaqeeelGDgtnlvlvlagelLekaeelirlGlspseiikGyelalkkalevLeelvvlevkdleekeelikalkaslsskqlgn.edilaelvakaiitvlPknsekfnvdnir...vvkllGgslsdsevlkGlvlkrea.egsvk.rvkdakvavfscpldtattetkGtvLlknaeelldyskgeekkiealikeiadsgvkvivaggsvsdlalhyvekykilvlkisskfelrrlckvvgatalvrlsapspeelGl.vdsvkveeigskkvtvikqeeedskistivLrGstknllddieraidDGvnvvkalvkdsrllpGagateieLakklkkyaeklkgleqyaikkfaeafeiiPrtlaenaGlnanevlskLyaahkkg.nkslgidiekesdavkdvkeekiyDllaakkfaiklateaavtvLkvDqiim 518
                  a l ni+a k +s+i+rt+lGP++m k++++ +  +++tnD   ilre++v hPaak ++++s+a    +GDgt  v+vlage L+ ae l    l+p+ i +Gy +al+ a++ L+++   +  d++++ el+k+++++  +k +++   ++++l  +a+ tv  ++  + ++d  r   v k+ Gg+++ds vlkG++++++  +++++ + ++ +v  + c+l+ ++ e    + + + +   +  + ee+ i+++  +i  +gv+v+v++  vsdla+hy+ k +i  ++   k +  r+++++gat + r+s  +p ++G+ +   +v+ +g++  t + + e+  k   ivLrG+ k++l+++er + D +n+++++  d rllpG+gate+ La++l++ +++++     a +  + a e+iPrtl en+G +   vl++L a+h +g n + gid ek+     d++   +++ ++ k+  +k + e+a  +L++D i+ 
  MMETSP1137-20121227|10166_1  31 AQLSNIAAGKAVSDIVRTTLGPRSMLKMLLDPMGGIVMTNDGNSILREVDVSHPAAKSMIELSRA----VGDGTTSVIVLAGEYLRLAEPLFDRHLHPTIICNGYLKALDDAIKFLDTIA--KPLDINDTAELSKLVQSCTGTKFVSRfSTMMVTLALEAVKTVYIEDGGRKELDIKRyakVEKIPGGNIEDSRVLKGVMMNKDLvHAKMRrKISNPRVLLLDCTLEYKKNESATSIEMTDDKAWEELLRIEEEAIKEMCGDIIAAGVDVVVTEKGVSDLAQHYLVKANISCIRRVRKTDNNRIARACGATIVHRVSEIQPKDIGTrCGLFEVSQVGDEFFTFFVDCEQ-PKACSIVLRGASKDVLNEVERNLGDAMNALRTIYLDPRLLPGGGATEMALAHHLADNSKRVEPTIANAYRAAGAALEVIPRTLLENCGADIIRVLTQLRAKHAHGaNATWGIDGEKGVL--ADMETLGVWEPFSVKIQTLKTSVETASMLLRIDEIVS 529
                  6689********************************************************99975....8***********************************************986..67899999****************997889999999*******99987766665442228899*******************624566546789*************************************************************************************************************6599***************99988.78999********************************************************999999***********************************77524556777766666..7**********************************95 PP

>> TIGR02347  chap_CCT_zeta: T-complex protein 1, zeta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  274.5   2.5   8.3e-85   3.4e-82       5     526 ..      19     531 ..      15     536 .. 0.92

  Alignments for each domain:
  == domain 1    score: 274.5 bits;  conditional E-value: 8.3e-85
    TIGR02347   5 lnkkaevlrkdaalkvnlnaakglqdvlktnlGPkGtlkmlvsgaGdikltkdGnvllkelqiqhPtasliaraaaaqdditGdGttstviligellkqaerlieeglhPrilteGleiakkealefleklkikkeeevdrelllevartslrtkleaeladklteivvdavlaikkde...eeidlfmvei.lemkhklevdtklirGlvldhGarhPdmkrkvknvyiltlnvsleyektevnsgfvyssaeereklveaerkfvddrvkkiielkkkvvekkadkgfvvinqkGidplsldllakegilalrrakrrnlerltlacGGealnsvedltpeslGyaGlvye.tvigeekytfieevknPksvtilikgpndhtlkqikdavrdGlravknaiedkcvvaGagafeiallkklkeekksvkGkaklgveafaeallviPkvlvensGydvqevlvkledeadear.evvgvdletgesivaelkgiwdnysvkkqllssatviasqlllvdevlraG 526
                  +++k +     +a   n+ a k+++d+++t lGP+  lkml++  G i +t dGn +l+e+ + hP+a+ +   +      +GdGtts+++l+ge l++ae l +  lhP i+ +G+  a + a++fl+ +  k  + +d   l + ++++  tk   ++   +     +av++++ ++   +e+d+    +  ++      d ++++G++++    h +m+rk++n  +l l+ +ley k e  +++   + +  e+l++ e + +++    ii           d   vv+ +kG+  l+   l k++i ++rr+++ + +r+  acG + +  v +++p+++G    ++e   +g+e +tf  ++++Pk++ i+++g+ +  l+ ++  + d + a++ +  d  +++G ga e+al+++l ++ k v+     +  a + al viP++l+en+G d++ vl++l++++ ++   + g+d e+g  ++ e+ g+w+ +svk q+l+++   as ll +de++   
  MMETSP1137-20121227|10166_1  19 MDQKVQRETGRKAQLSNIAAGKAVSDIVRTTLGPRSMLKMLLDPMGGIVMTNDGNSILREVDVSHPAAKSMIELSR----AVGDGTTSVIVLAGEYLRLAEPLFDRHLHPTIICNGYLKALDDAIKFLDTI-AKPLDINDTAELSKLVQSCTGTKFVSRFSTMMVTLALEAVKTVYIEDggrKELDIKRYAKvEKIPGGNIEDSRVLKGVMMNKDLVHAKMRRKISNPRVLLLDCTLEYKKNESATSIEMTDDKAWEELLRIEEEAIKEMCGDII-------AAGVD---VVVTEKGVSDLAQHYLVKANISCIRRVRKTDNNRIARACGATIVHRVSEIQPKDIGTRCGLFEvSQVGDEFFTFFVDCEQPKACSIVLRGASKDVLNEVERNLGDAMNALRTIYLDPRLLPGGGATEMALAHHLADNSKRVEPTIANAYRAAGAALEVIPRTLLENCGADIIRVLTQLRAKHAHGAnATWGIDGEKGVLADMETLGVWEPFSVKIQTLKTSVETASMLLRIDEIVSGT 531
                  5666666666677788***************************************************976666555....58*************************************************.7888999************************************9876322456665443304456667789***********************************************************9998887776666.......45556...89999***************************************************8655565167*******************************************************************************************************************999874789*******************************************98654 PP

>> TIGR02341  chap_CCT_beta: T-complex protein 1, beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  257.6   3.1   1.1e-79   4.5e-77       2     514 ..      18     530 ..      17     535 .. 0.92

  Alignments for each domain:
  == domain 1    score: 257.6 bits;  conditional E-value: 1.1e-79
    TIGR02341   2 ilkdsaeeeraenarlssfvgaiavgdlvkstlgpkgmdkillsasseasivvtndgatilksialdnpaakvlvdiskvqddevgdgttsvtvlaaellreaeklvnkkihpqtiiegyrlatkaalealkksavdnssdkvkfredllkiarttlsskilsqdkdhfaklavdavlrl....kgstnlea...iqiikklggklddsyldegfllekkigv.nqpkrienakiliantaldtdkvkvfgsrvrvdstaklaelekaekekmkekvekilkhninvfinrqliynypeqlfadagvmaiehadfegverlalvtggeivstfdepelvklg.scdlieeiligedkllkfsgvklgeactivlrgatqqildeaerslhdalavlsqtvkesrtvlgggcaellmakaveeeaqkvagkkalaveafakalrqlptiladnagfdsaelvaklraahaeg.nstagldleegeiadlrklgivesyklkravvssaaeaaevllrvdniika 514
                  ++++++++e + +a+ls +    av d+v++tlgp+ m k+ll      +iv+tndg +il+++ +  paak ++++s+     vgdgttsv vla e lr ae l ++++hp +i +gy +a++ a++ l + a     d ++   +l k+ ++  ++k +s+    +  la +av  +     g  +l+     ++ k+ gg+++ds + +g +++k +   +  ++i n ++l+ + +l+  k     s    d      el + e e +ke    i + +++v +  + + +  +  + +a++ +i        +r+a   g  iv    e +   +g +c l e   +g++ +  f  ++  +ac+ivlrga++++l+e er l da+  l +   + r   ggg++e+ +a+ +++++++v+   a a  a + al+ +p  l +n g d   ++++lra+ha+g n t g+d e+g +ad+++lg+ e + +k + + ++ e+a +llr+d+i+  
  MMETSP1137-20121227|10166_1  18 VMDQKVQRETGRKAQLSNIAAGKAVSDIVRTTLGPRSMLKMLLDPMG--GIVMTNDGNSILREVDVSHPAAKSMIELSRA----VGDGTTSVIVLAGEYLRLAEPLFDRHLHPTIICNGYLKALDDAIKFLDTIAKPL--D-INDTAELSKLVQSCTGTKFVSRFSTMMVTLALEAVKTVyiedGGRKELDIkryAKVEKIPGGNIEDSRVLKGVMMNKDLVHaKMRRKISNPRVLLLDCTLEYKKNESATSIEMTDDK-AWEELLRIEEEAIKEMCGDIIAAGVDVVVTEKGVSDLAQHYLVKANISCIRRVRKTDNNRIARACGATIVHRVSEIQPKDIGtRCGLFEVSQVGDEFFTFFVDCEQPKACSIVLRGASKDVLNEVERNLGDAMNALRTIYLDPRLLPGGGATEMALAHHLADNSKRVEPTIANAYRAAGAALEVIPRTLLENCGADIIRVLTQLRAKHAHGaNATWGIDGEKGVLADMETLGVWEPFSVKIQTLKTSVETASMLLRIDEIVSG 530
                  578899************************************98665..9****************************85....9*******************************************9998765443..3.334578999999999******************997652222467778752224677899*****************8765156778**************9998876655555554.4689*************************************************************************9999945******************************************************************************************************************************945689********************************************975 PP

>> TIGR02348  GroEL: chaperonin GroL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.3   0.0   5.2e-09   2.1e-06      19     150 ..      40     163 ..      24     255 .. 0.77
   2 ?   -1.4   0.1      0.31   1.3e+02     382     467 ..     258     340 ..     228     352 .. 0.65
   3 !   28.7   0.0   2.4e-10     1e-07     386     522 ..     388     530 ..     376     534 .. 0.84

  Alignments for each domain:
  == domain 1    score: 24.3 bits;  conditional E-value: 5.2e-09
    TIGR02348  19 dkladavkvtlGPkgrnvvleksfGaPkitkdGvtvakeieledkfenlGaklvkevasktndvaGdGtttatvlaqaivkeGlknvaaGanpielkrGiekavekvveelkklskevkdkeeiaqvatisa 150
                  ++++d v++tlGP++   +l   +G   +t+dG ++ +e++++++  +   +l          + GdGtt  +vla   ++           p  + +G  ka++++++ l++ +k+++ ++  +    + +
  MMETSP1137-20121227|10166_1  40 KAVSDIVRTTLGPRSMLKMLLDPMGGIVMTNDGNSILREVDVSHPAAKSMIELS--------RAVGDGTTSVIVLAGEYLRLAEPLFDRHLHPTIICNGYLKALDDAIKFLDTIAKPLDINDTAELSKLVQS 163
                  6899************9999999*******************999876555554........457****************99999999***********************99998765543333333333 PP

  == domain 2    score: -1.4 bits;  conditional E-value: 0.31
    TIGR02348 382 atetelkekkarvedalnatraavee..GivaGGGvallraaekleelkeksedekvGveivkraleaPlrqiaenaGkdgavvvekv 467
                  at +e+ + ka  e+ l+    a++e  G +   Gv ++ + + +++l ++    k  ++ ++r  ++  ++ia+ +G     +v++v
  MMETSP1137-20121227|10166_1 258 ATSIEMTDDKA-WEELLRIEEEAIKEmcGDIIAAGVDVVVTEKGVSDLAQHY-LVKANISCIRRVRKTDNNRIARACGA---TIVHRV 340
                  56666666665.3566666666666655556666677777777777765554.45556666777777777777777664...344444 PP

  == domain 3    score: 28.7 bits;  conditional E-value: 2.4e-10
    TIGR02348 386 elkekkarvedalnatraa.veeGivaGGGvallraaekleelkekse.dekvGveivkraleaPlrqiaenaGkdgavvvekvkek....kdeevGfnaatdeyedlveaGiidpakvtrsalqnaasiagllltteavvad 522
                   l e    + da+na r+  ++  +++GGG++ + +a++l + +++ e   +  ++    ale   r++ en+G d   v+ ++++k     ++++G +++++   d+ + G+ +p  v  ++l+ ++  a++ll  + +v+ 
  MMETSP1137-20121227|10166_1 388 VLNEVERNLGDAMNALRTIyLDPRLLPGGGATEMALAHHLADNSKRVEpTIANAYRAAGAALEVIPRTLLENCGADIIRVLTQLRAKhahgANATWGIDGEKGVLADMETLGVWEPFSVKIQTLKTSVETASMLLRIDEIVSG 530
                  4777788899******986367889***************9977777646667778888899998999**********999999877333346789***************************************99988876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (550 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       118  (0.0287665); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                        20  (0.00487567); expected 4.1 (0.001)
Passed Fwd filter:                        10  (0.00243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.58u 0.18s 00:00:00.76 Elapsed: 00:00:01.30
# Mc/sec: 558.42
//
Query:       MMETSP1137-20121227|10167_1  [L=117]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (117 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       167  (0.0407118); expected 82.0 (0.02)
Passed bias filter:                      148  (0.03608); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.19s 00:00:00.35 Elapsed: 00:00:00.34
# Mc/sec: 454.20
//
Query:       MMETSP1137-20121227|10169_1  [L=173]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (173 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        83  (0.020234); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.15s 00:00:00.32 Elapsed: 00:00:00.34
# Mc/sec: 671.59
//
Query:       MMETSP1137-20121227|10170_1  [L=288]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (288 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       108  (0.0263286); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.15s 00:00:00.38 Elapsed: 00:00:00.43
# Mc/sec: 884.02
//
Query:       MMETSP1137-20121227|10171_1  [L=172]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (172 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       135  (0.0329108); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.16s 00:00:00.34 Elapsed: 00:00:01.02
# Mc/sec: 222.57
//
Query:       MMETSP1137-20121227|10172_1  [L=71]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (71 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        34  (0.00828864); expected 82.0 (0.02)
Passed bias filter:                       32  (0.00780107); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.14s 00:00:00.27 Elapsed: 00:00:00.40
# Mc/sec: 234.28
//
Query:       MMETSP1137-20121227|10173_1  [L=630]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   3.5e-141  468.8   0.1   1.7e-140  466.5   0.0    1.8  1  TIGR00382 clpX: ATP-dependent Clp protease, ATP-binding subunit ClpX
    2.5e-53  179.4   0.2    2.9e-16   57.2   0.0    4.1  4  TIGR00390 hslU: ATP-dependent protease HslVU, ATPase subunit
    3.4e-09   33.3   0.0    0.00015   17.9   0.0    2.2  2  TIGR02639 ClpA: ATP-dependent Clp protease ATP-binding subunit ClpA
    5.5e-09   32.7   0.1    8.2e-09   32.1   0.0    1.2  1  TIGR01243 CDC48: AAA family ATPase, CDC48 subfamily
      4e-08   30.6   0.1    8.1e-08   29.6   0.1    1.4  1  TIGR01242 26Sp45: 26S proteasome subunit P45 family
    4.5e-07   26.8   0.1    6.8e-07   26.2   0.1    1.1  1  TIGR01241 FtsH_fam: ATP-dependent metallopeptidase HflB
    1.4e-06   24.7   0.1    0.00018   17.7   0.0    2.1  2  TIGR03345 VI_ClpV1: type VI secretion ATPase, ClpV1 family
    1.6e-06   24.6   0.0     0.0043   13.3   0.0    2.3  2  TIGR03346 chaperone_ClpB: ATP-dependent chaperone protein ClpB
      4e-05   20.4   0.5     0.0056   13.4   0.0    2.2  2  TIGR02928 TIGR02928: orc1/cdc6 family replication initiation protein
      8e-05   19.6   0.5    0.00028   17.9   0.0    2.0  3  TIGR00635 ruvB: Holliday junction DNA helicase RuvB
    0.00031   18.2   0.0    0.00054   17.4   0.0    1.3  1  TIGR02640 gas_vesic_GvpN: gas vesicle protein GvpN
    0.00035   18.5   0.8     0.0014   16.5   0.0    2.2  3  TIGR03499 FlhF: flagellar biosynthesis protein FlhF
    0.00066   16.2   0.3     0.0029   14.0   0.0    2.1  3  TIGR00368 TIGR00368: Mg chelatase-like protein
     0.0049   13.8   0.1      0.015   12.1   0.0    1.7  2  TIGR02881 spore_V_K: stage V sporulation protein K
  ------ inclusion threshold ------
      0.015   11.6   0.1      0.054    9.7   0.0    1.7  1  TIGR00763 lon: ATP-dependent protease La
      0.019   12.2   0.1        1.3    6.2   0.0    2.2  2  TIGR03167 tRNA_sel_U_synt: tRNA 2-selenouridine synthase


Domain annotation for each model (and alignments):
>> TIGR00382  clpX: ATP-dependent Clp protease, ATP-binding subunit ClpX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  466.5   0.0  6.6e-143  1.7e-140      60     413 ..     194     602 ..     180     603 .. 0.93

  Alignments for each domain:
  == domain 1    score: 466.5 bits;  conditional E-value: 6.6e-143
    TIGR00382  60 eleleelpkpkelkevldeyviGqeqakkvlsvavynhykrlrleknkksddg...............................................veleksnilliGptGsGktllaqtlakeldvpfaiadattlteaGyvGedvenillkllqaadydvekaekGiiyideidkiarksenasitrdvsGeGvqqallklieGtvanvppkGGrkhpeqeliqidtsnilficgGafaGlekiikkrlekksiGfsaekkkkkkee......aellkkvepedlvkfGlipefiGrlpvlatlekldeealvailtkpknalvkqyqkllkldevelefeeealkaiakkalerktGarglrsiveellldvmfelpsled..lekvvitkevvlkqeepkl 413
                  +++l +lp p+ +k+ ld+yviGq++ k++lsva+ynhykrlr+ +++   ++                                               +e++ksni+l+GptGsGktlla+tlak ++vpfaiadattlt+aGyvGedve +l kl  aa+ +ve ++ Giiy+deidk+ar+++  ++trdvsGeGvqqallk++eGtv+nvp +GGrk p+ e i idt+nilficgGaf+Gl++++ +r+++ +iGf a++ k+ + +      +e    v+ edl+ +G++pef+Gr+pv ++l  l+e+++v++l +p+nal+kqy +l+  d vel  + +a+ a+a++a e +tGarglrsi+ee+ll  m++lps     +++vv+t++vv++ + p l
  MMETSP1137-20121227|10173_1 194 SFKLGQLPPPEVMKAELDKYVIGQDEVKRTLSVAMYNHYKRLRIGTESSEPSSxtdaeaapnasasxasasaaapasmsaepaarsgselmdisraasepLEMDKSNIMLVGPTGSGKTLLARTLAKLVEVPFAIADATTLTQAGYVGEDVESVLHKLYLAANQNVEATQVGIIYLDEIDKLARRADAITMTRDVSGEGVQQALLKMLEGTVVNVPERGGRKNPRAESIAIDTTNILFICGGAFSGLQRVVAQRMRTATIGFDANVSKNAEIDamaakdGEGTLPVKVEDLISYGFLPEFVGRFPVYTQLRALSEQQMVHVLSRPHNALLKQYAALFAADGVELAVTADAVAAVARRARESQTGARGLRSILEEVLLAAMYDLPSWASrgVRRVVVTESVVTEGKPPLL 602
                  567889*************************************943333222256789*************************************************************************************************************************************************************************************************************99988877553333335566679**************************************************************************************************97542389*********99988766 PP

>> TIGR00390  hslU: ATP-dependent protease HslVU, ATPase subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.9   0.0   3.6e-09   9.2e-07       5      38 ..     205     238 ..     200     244 .. 0.85
   2 !   51.7   0.0   5.3e-17   1.4e-14      47     104 ..     298     355 ..     291     361 .. 0.90
   3 !   40.0   0.0   1.9e-13   4.9e-11     244     309 ..     360     438 ..     352     442 .. 0.77
   4 !   57.2   0.0   1.1e-18   2.9e-16     316     413 ..     489     581 ..     480     597 .. 0.87

  Alignments for each domain:
  == domain 1    score: 25.9 bits;  conditional E-value: 3.6e-09
    TIGR00390   5 eivaeldkyiiGqdeakkavaialrnryrrlqle 38 
                   + aeldky+iGqde k+++++a+ n y+rl++ 
  MMETSP1137-20121227|10173_1 205 VMKAELDKYVIGQDEVKRTLSVAMYNHYKRLRIG 238
                  34589*************************9986 PP

  == domain 2    score: 51.7 bits;  conditional E-value: 5.3e-17
    TIGR00390  47 PknilmiGstGvGkteiarrlaklaeaPfikveatkftevGyvGrdveslvrdlvdaa 104
                    ni+++G+tG Gkt +ar lakl+e+Pf   +at  t+ GyvG dves++  l  aa
  MMETSP1137-20121227|10173_1 298 KSNIMLVGPTGSGKTLLARTLAKLVEVPFAIADATTLTQAGYVGEDVESVLHKLYLAA 355
                  57************************************************99987655 PP

  == domain 3    score: 40.0 bits;  conditional E-value: 1.9e-13
    TIGR00390 244 rveesGiifideidkiakkg..essgadvsreGvqrdllPiveGstvst..kyG.........svktdhilfiaaGafq 309
                  ++ + Gii++deidk+a+++   + ++dvs eGvq+ ll ++eG++v+   + G          ++t  ilfi  Gaf 
  MMETSP1137-20121227|10173_1 360 EATQVGIIYLDEIDKLARRAdaITMTRDVSGEGVQQALLKMLEGTVVNVpeRGGrknpraesiAIDTTNILFICGGAFS 438
                  45689*************995346789********************9633222333333333699***********95 PP

  == domain 4    score: 57.2 bits;  conditional E-value: 1.1e-18
    TIGR00390 316 liPelqGrlPirvelkaltvddleriltetkaslikqykallkvegvelefsdeaikkiaelaynvnekteniGarrlhtvlerlledlsfeaedlsl 413
                  ++Pe+ Gr+P+  +l+al++++++++l +++++l+kqy al++++gvel+ + +a+  +a+ a        + Gar l ++le +l   +++ +    
  MMETSP1137-20121227|10173_1 489 FLPEFVGRFPVYTQLRALSEQQMVHVLSRPHNALLKQYAALFAADGVELAVTADAVAAVARRAR-----ESQTGARGLRSILEEVLLAAMYDLPSWAS 581
                  57*****************************************************999998763.....3467*************999999887654 PP

>> TIGR02639  ClpA: ATP-dependent Clp protease ATP-binding subunit ClpA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   0.0   1.6e-05    0.0042     486     519 ..     297     330 ..     280     375 .. 0.86
   2 !   17.9   0.0   5.9e-07   0.00015     626     715 ..     480     573 ..     456     576 .. 0.84

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 1.6e-05
    TIGR02639 486 PvgsflfvGptGvGktelakqLaeelgvellrfD 519
                    ++ + vGptG Gkt la++La+ + v +   D
  MMETSP1137-20121227|10173_1 297 DKSNIMLVGPTGSGKTLLARTLAKLVEVPFAIAD 330
                  5578899*******************99987666 PP

  == domain 2    score: 17.9 bits;  conditional E-value: 5.9e-07
    TIGR02639 626 ksekaikklfsPefrnrldaiikfedlseevlekivkkeleelekk....LaekkveleleddaikylaekgydeefGarelkrvieeeikkkl 715
                  k+e+ i+  f Pef  r+    + + lse+++++++++  + l k+    +a+  vel +++da+  +a ++ +++ Gar l+ ++ee +  ++
  MMETSP1137-20121227|10173_1 480 KVEDLISYGFLPEFVGRFPVYTQLRALSEQQMVHVLSRPHNALLKQyaalFAADGVELAVTADAVAAVARRARESQTGARGLRSILEEVLLAAM 573
                  677889999***************************9976666555222157899***************************999998776655 PP

>> TIGR01243  CDC48: AAA family ATPase, CDC48 subfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.1   0.0   3.2e-11   8.2e-09     214     301 ..     300     395 ..     291     412 .. 0.77

  Alignments for each domain:
  == domain 1    score: 32.1 bits;  conditional E-value: 3.2e-11
    TIGR01243 214 gvllygppgtgktllakavaneagayfiaingpeim.skyyges.eerlreifkeaeenaps....iifideidaiapkreevt..gevekrvvaq 301
                   ++l+gp g+gktlla+++a  ++  f   +   +  + y+ge  e  l +++  a++n  +    ii++deid +a + + +t   +v    v q
  MMETSP1137-20121227|10173_1 300 NIMLVGPTGSGKTLLARTLAKLVEVPFAIADATTLTqAGYVGEDvESVLHKLYLAANQNVEAtqvgIIYLDEIDKLARRADAITmtRDVSGEGVQQ 395
                  599**********************99888877765268***9637789****99999875444449**********9999765114555554544 PP

>> TIGR01242  26Sp45: 26S proteasome subunit P45 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.6   0.1   3.2e-10   8.1e-08     158     250 ..     300     401 ..     293     408 .. 0.72

  Alignments for each domain:
  == domain 1    score: 29.6 bits;  conditional E-value: 3.2e-10
    TIGR01242 158 GvllyGppGtGktllakavaeetnatfirvvgselvkk.yiGeGarlv.revfklakek....apsiifideidaiaakrldsst.....sGdrevqrtllqll 250
                   ++l Gp G+Gktlla+++a+ ++  f    ++ l +  y+Ge    v ++++  a++        ii++deid +a  r d+ t     sG+  vq++ll++l
  MMETSP1137-20121227|10173_1 300 NIMLVGPTGSGKTLLARTLAKLVEVPFAIADATTLTQAgYVGEDVESVlHKLYLAANQNveatQVGIIYLDEIDKLAR-RADAITmtrdvSGE-GVQQALLKML 401
                  589************************999999998744****987661555555544322113469********975.55544411111333.4777777665 PP

>> TIGR01241  FtsH_fam: ATP-dependent metallopeptidase HflB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.2   0.1   2.6e-09   6.8e-07      92     186 ..     301     400 ..     296     405 .. 0.80

  Alignments for each domain:
  == domain 1    score: 26.2 bits;  conditional E-value: 2.6e-09
    TIGR01241  92 vllvGpPGtGktLlakavaGeagvpffsisGsdfvem.fvGvGasrv.rDlfeqakknaP....ciifiDeiDavGrkrgaglgggndereqtLnqlLvem 186
                  ++lvGp G+GktLla+ +a   +vpf     + + +  +vG   + v   l+  a +n      +ii++DeiD + r+ + +++ + d   + + q L  m
  MMETSP1137-20121227|10173_1 301 IMLVGPTGSGKTLLARTLAKLVEVPFAIADATTLTQAgYVGEDVESVlHKLYLAANQNVEatqvGIIYLDEIDKLARR-ADAITMTRDVSGEGVQQALLKM 400
                  89************************998888887644999987665378999888875422227**********985.5557778898888888887776 PP

>> TIGR03345  VI_ClpV1: type VI secretion ATPase, ClpV1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.7   0.0    0.0061       1.6     581     619 ..     283     321 ..     273     323 .. 0.83
   2 !   17.7   0.0   7.1e-07   0.00018     734     831 ..     472     573 ..     447     581 .. 0.75

  Alignments for each domain:
  == domain 1    score: 4.7 bits;  conditional E-value: 0.0061
    TIGR03345 581 rirtarAgledpkkPlgvFllvGpsGvGktetalalAel 619
                   + ++rA  e  +  ++  +lvGp G Gkt  a +lA l
  MMETSP1137-20121227|10173_1 283 LMDISRAASEPLEMDKSNIMLVGPTGSGKTLLARTLAKL 321
                  5677788877778888889************99999975 PP

  == domain 2    score: 17.7 bits;  conditional E-value: 7.1e-07
    TIGR03345 734 peaealaealrpeLlkvfkpAllgRlevvpyl.plsdevlaeivelkleriakr...lkenykaeleydealveeivarctevesGaRaidaileqtllpel 831
                  + + +l  ++++ ++  f p ++gR  v + l  ls++++ ++ +   + + k+   l +  ++el+++ ++v+++++r+ e+++GaR + +ile+ ll+++
  MMETSP1137-20121227|10173_1 472 DGEGTLPVKVEDLISYGFLPEFVGRFPVYTQLrALSEQQMVHVLSRPHNALLKQyaaLFAADGVELAVTADAVAAVARRARESQTGARGLRSILEEVLLAAM 573
                  34456777788888889*********99876527999999999876555554441114456699********************************999876 PP

>> TIGR03346  chaperone_ClpB: ATP-dependent chaperone protein ClpB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.9   0.0   0.00035      0.09     583     618 ..     286     321 ..     271     327 .. 0.74
   2 !   13.3   0.0   1.7e-05    0.0043     712     822 ..     454     569 ..     438     576 .. 0.82

  Alignments for each domain:
  == domain 1    score: 8.9 bits;  conditional E-value: 0.00035
    TIGR03346 583 rsraglsdPnrPigsflflGptGvGktelakalaef 618
                   sra  +  +   +  +++GptG Gkt la++la+ 
  MMETSP1137-20121227|10173_1 286 ISRAASEPLEMDKSNIMLVGPTGSGKTLLARTLAKL 321
                  5555544445556778999***************86 PP

  == domain 2    score: 13.3 bits;  conditional E-value: 1.7e-05
    TIGR03346 712 iltsnlgse.aiqelaeeeeaeevkeavmealraefrPeflnrideivvfkalekeeikeive....iqlerlrkrlaerklelelsdaaldllaeagydPvyGarPlkraiqkel 822
                   + +n++ +  i  +a+++ + ++  +v + ++  f Pef+ r      ++al+++++ ++ +      l++    +a   +el+++ +a++++a+++ +   Gar l+ ++++ l
  MMETSP1137-20121227|10173_1 454 GFDANVSKNaEIDAMAAKDGEGTLPVKVEDLISYGFLPEFVGRFPVYTQLRALSEQQMVHVLSrphnALLKQYAALFAADGVELAVTADAVAAVARRARESQTGARGLRSILEEVL 569
                  55667665415667777777999999********************************999752222567778888999*****************************99887765 PP

>> TIGR02928  TIGR02928: orc1/cdc6 family replication initiation protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.0   2.2e-05    0.0056      40      65 ..     298     323 ..     283     336 .. 0.87
   2 !    5.0   0.1    0.0077         2     122     147 ..     356     380 ..     335     393 .. 0.74

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 2.2e-05
    TIGR02928  40 psnvliyGktGtGKtavtkkvlkele 65 
                   sn++++G+tG+GKt+ ++ + k +e
  MMETSP1137-20121227|10173_1 298 KSNIMLVGPTGSGKTLLARTLAKLVE 323
                  58****************99988765 PP

  == domain 2    score: 5.0 bits;  conditional E-value: 0.0077
    TIGR02928 122 keleeredsliivLDEiDklvkkead 147
                  ++  e  ++ ii LDEiDkl  + ad
  MMETSP1137-20121227|10173_1 356 NQNVEATQVGIIYLDEIDKLA-RRAD 380
                  4555778889**********5.4444 PP

>> TIGR00635  ruvB: Holliday junction DNA helicase RuvB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0       2.5   6.5e+02       6      20 ..     213     228 ..     209     234 .. 0.75
   2 !   17.9   0.0   1.1e-06   0.00028      16      97 ..     284     379 ..     279     385 .. 0.71
   3 ?   -2.1   0.0       1.3   3.3e+02     172     195 ..     532     555 ..     496     566 .. 0.80

  Alignments for each domain:
  == domain 1    score: -3.1 bits;  conditional E-value: 2.5
    TIGR00635   6 f.iGqekvkeklqlfi 20 
                  + iGq++vk++l++++
  MMETSP1137-20121227|10173_1 213 YvIGQDEVKRTLSVAM 228
                  4279*****9999987 PP

  == domain 2    score: 17.9 bits;  conditional E-value: 1.1e-06
    TIGR00635  16 lqlfikaakkrkealdhvllyGPPGlGkttlakiiakelgvklkitsgpalekpg....Dlaailtal........e..egdvlfiDeihrlskav 97 
                  ++++  a++  +     ++l+GP G Gkt la+ +ak ++v   i+ + +l+++g    D+ ++l +l        e  +  ++++Dei +l++ +
  MMETSP1137-20121227|10173_1 284 MDISRAASEPLEMDKSNIMLVGPTGSGKTLLARTLAKLVEVPFAIADATTLTQAGyvgeDVESVLHKLylaanqnvEatQVGIIYLDEIDKLARRA 379
                  55666666666677788**********************************998533347777776542222221121123467888888887765 PP

  == domain 3    score: -2.1 bits;  conditional E-value: 1.3
    TIGR00635 172 aklleleieeeaaleiarrsrgtp 195
                  a+ +el ++++a++++arr+r+  
  MMETSP1137-20121227|10173_1 532 ADGVELAVTADAVAAVARRARESQ 555
                  556788889999999999999764 PP

>> TIGR02640  gas_vesic_GvpN: gas vesicle protein GvpN
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.0   2.1e-06   0.00054      18      70 ..     294     346 ..     280     361 .. 0.78

  Alignments for each domain:
  == domain 1    score: 17.4 bits;  conditional E-value: 2.1e-06
    TIGR02640  18 lksgy.pvhlrGPaGtGktslalhvakkrdrPvvllnGdaelktsdlvGeeagy 70 
                  l+ +   + l+GP+G+Gkt la+ +ak  + P   +     l+++  vGe  + 
  MMETSP1137-20121227|10173_1 294 LEMDKsNIMLVGPTGSGKTLLARTLAKLVEVPFA-IADATTLTQAGYVGEDVES 346
                  555541589***********************76.5566789999999998775 PP

>> TIGR03499  FlhF: flagellar biosynthesis protein FlhF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0       1.7   4.5e+02      68      99 ..     246     277 ..     220     297 .. 0.47
   2 !   16.5   0.0   5.4e-06    0.0014     189     218 ..     289     321 ..     281     324 .. 0.80
   3 ?   -1.8   0.0       2.1   5.4e+02     120     185 ..     503     569 ..     500     584 .. 0.68

  Alignments for each domain:
  == domain 1    score: -1.6 bits;  conditional E-value: 1.7
    TIGR03499  68 kaleeaepkklskaeekeekekeaeekaaeaa 99 
                  + ++++++ ++s++ ++++++++a+++a++aa
  MMETSP1137-20121227|10173_1 246 SXTDAEAAPNASASXASASAAAPASMSAEPAA 277
                  22222222222222222222222232232222 PP

  == domain 2    score: 16.5 bits;  conditional E-value: 5.4e-06
    TIGR03499 189 keedeilekggviaLvGptGvGKTT...TlAKL 218
                  +++++++ ++  i+LvGptG+GKT    TlAKL
  MMETSP1137-20121227|10173_1 289 AASEPLEMDKSNIMLVGPTGSGKTLlarTLAKL 321
                  556677777889************555588887 PP

  == domain 3    score: -1.8 bits;  conditional E-value: 2.1
    TIGR03499 120 lkellekqlselaleeedperakllkklleagvseelarelleklke.kedaeeareklreaLekkl 185
                  l++l e+q+ ++ ++ ++   ++  +   + gv+  ++ + ++ + + ++++++  + lr++Le+ l
  MMETSP1137-20121227|10173_1 503 LRALSEQQMVHVLSRPHNALLKQYAALFAADGVELAVTADAVAAVARrARESQTGARGLRSILEEVL 569
                  6666666666664455555566666666777888888888888777766677777778888888776 PP

>> TIGR00368  TIGR00368: Mg chelatase-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0      0.65   1.7e+02     192     212 ..     212     232 ..     205     242 .. 0.78
   2 !   14.0   0.0   1.1e-05    0.0029     212     234 ..     299     321 ..     287     332 .. 0.89
   3 ?   -3.5   0.1       2.4   6.1e+02     410     437 ..     441     467 ..     440     470 .. 0.77

  Alignments for each domain:
  == domain 1    score: -1.6 bits;  conditional E-value: 0.65
    TIGR00368 192 kdvkGqqrakraleiaaaGgh 212
                  k v+Gq++ kr+l +a+   +
  MMETSP1137-20121227|10173_1 212 KYVIGQDEVKRTLSVAMYNHY 232
                  569***********9986655 PP

  == domain 2    score: 14.0 bits;  conditional E-value: 1.1e-05
    TIGR00368 212 hnllllGPPGsGktllakrlqgl 234
                   n++l+GP GsGktlla+ l  l
  MMETSP1137-20121227|10173_1 299 SNIMLVGPTGSGKTLLARTLAKL 321
                  6*****************99876 PP

  == domain 3    score: -3.5 bits;  conditional E-value: 2.4
    TIGR00368 410 qrvlkareiqikraekdakislnaelns 437
                  qrv++ r ++++  + da++s+nae+++
  MMETSP1137-20121227|10173_1 441 QRVVAQR-MRTATIGFDANVSKNAEIDA 467
                  6777666.5667778889*******997 PP

>> TIGR02881  spore_V_K: stage V sporulation protein K
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.1   0.0     6e-05     0.015      44     122 ..     300     380 ..     284     402 .. 0.79
   2 ?   -2.1   0.0       1.4   3.5e+02     167     234 ..     495     568 ..     489     573 .. 0.66

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 6e-05
    TIGR02881  44 hmifkGnPGtGkttvarllaklfkelnvlskGhlieveradlvGeyiGhtaqk....trevikkalGGvlfideayslarGGe 122
                   +++ G  G+Gkt +ar lakl++    ++      + +a  vGe +    +k    + ++++ ++ G++++de   lar  +
  MMETSP1137-20121227|10173_1 300 NIMLVGPTGSGKTLLARTLAKLVEVPFAIAD--ATTLTQAGYVGEDVESVLHKlylaANQNVEATQVGIIYLDEIDKLARRAD 380
                  4577899**************9875444444..44567899****99988887333357899999**************9765 PP

  == domain 2    score: -2.1 bits;  conditional E-value: 1.4
    TIGR02881 167 srfpisldfpdytveelleiakk....mveereyklteeaka..klreklakvksasekefsnarlvrnlieka 234
                   rfp+  ++   + +++++++ +    ++++    ++ ++       + +a v++ ++++++ ar +r ++e+ 
  MMETSP1137-20121227|10173_1 495 GRFPVYTQLRALSEQQMVHVLSRphnaLLKQYAALFAADGVElaVTADAVAAVARRARESQTGARGLRSILEEV 568
                  67777777777777777777643222266676667776654311345678888888888889999999999875 PP

>> TIGR00763  lon: ATP-dependent protease La
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.0   0.00021     0.054     356     449 ..     301     402 ..     292     448 .. 0.65

  Alignments for each domain:
  == domain 1    score: 9.7 bits;  conditional E-value: 0.00021
    TIGR00763 356 lclvGPPGVGKtSlaksiAkalnrkfvrlslGGlkDvaeikGHRrtYvGalPGkiiqglkkvkten......PlillDEiDKlg.........ssvrGdPa.saLLEvLD 449
                  ++lvGP G GKt la+++Ak ++  f       ++D + +      YvG     ++++l  +  +n       +i lDEiDKl+         ++v G+    aLL +L+
  MMETSP1137-20121227|10173_1 301 IMLVGPTGSGKTLLARTLAKLVEVPFA------IADATTLT--QAGYVGEDVESVLHKLYLAANQNveatqvGIIYLDEIDKLArradaitmtRDVSGEGVqQALLKMLE 402
                  679******************998885......45555553..3456665555555555444333322222268888888888877777777777777754257777775 PP

>> TIGR03167  tRNA_sel_U_synt: tRNA 2-selenouridine synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   0.0    0.0049       1.3     127     150 ..     298     321 ..     286     325 .. 0.79
   2 ?    3.6   0.0      0.03       7.7      29     124 ..     357     452 ..     346     460 .. 0.78

  Alignments for each domain:
  == domain 1    score: 6.2 bits;  conditional E-value: 0.0049
    TIGR03167 127 lklvvlgGnTGsgKtelLeklaea 150
                   + ++l G TGsgKt l ++la+ 
  MMETSP1137-20121227|10173_1 298 KSNIMLVGPTGSGKTLLARTLAKL 321
                  46799**********998888765 PP

  == domain 2    score: 3.6 bits;  conditional E-value: 0.03
    TIGR03167  29 ndeeraevGtlYkqkgqeeAvklGlelvaeklkel.leevqelaekekevllyCwRGGlRSkslawllkeaglevlrleGG.YKayRrlvldeleela 124
                  ++ e ++vG++Y  +  + A+++ +  ++++++ + ++++   + +   v+    RGG +    ++++    +++l + GG +  + r+v +++++++
  MMETSP1137-20121227|10173_1 357 QNVEATQVGIIYLDEIDKLARRADAITMTRDVSGEgVQQALLKMLEGT-VVNVPERGGRKNPRAESIA-IDTTNILFICGGaFSGLQRVVAQRMRTAT 452
                  578999*****************9999999999988888655555554.7778899999999999998.55566666666647778888877777655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (630 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       263  (0.0641151); expected 82.0 (0.02)
Passed bias filter:                      205  (0.0499756); expected 82.0 (0.02)
Passed Vit filter:                        84  (0.0204778); expected 4.1 (0.001)
Passed Fwd filter:                        16  (0.00390054); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              16  [number of targets reported over threshold]
# CPU time: 0.82u 0.19s 00:00:01.01 Elapsed: 00:00:01.13
# Mc/sec: 729.41
//
Query:       MMETSP1137-20121227|10174_1  [L=421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (421 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        53  (0.0129205); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.11s 00:00:00.40 Elapsed: 00:00:00.44
# Mc/sec: 1262.90
//
Query:       MMETSP1137-20121227|10175_1  [L=571]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (571 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.15s 00:00:00.52 Elapsed: 00:00:00.50
# Mc/sec: 1507.32
//
Query:       MMETSP1137-20121227|10176_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        46  (0.011214); expected 82.0 (0.02)
Passed bias filter:                       40  (0.00975134); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.11s 00:00:00.23 Elapsed: 00:00:00.23
# Mc/sec: 292.67
//
Query:       MMETSP1137-20121227|10177_1  [L=737]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (737 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       163  (0.0397367); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.13s 00:00:00.59 Elapsed: 00:00:00.60
# Mc/sec: 1621.27
//
Query:       MMETSP1137-20121227|10178_1  [L=54]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        55  (0.0134081); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.14s 00:00:00.27 Elapsed: 00:00:00.37
# Mc/sec: 192.63
//
Query:       MMETSP1137-20121227|10180_1  [L=59]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (59 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        36  (0.00877621); expected 82.0 (0.02)
Passed bias filter:                       30  (0.00731351); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.15s 00:00:00.26 Elapsed: 00:00:00.35
# Mc/sec: 222.50
//
Query:       MMETSP1137-20121227|10182_1  [L=108]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (108 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       123  (0.0299854); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.56
# Mc/sec: 254.55
//
Query:       MMETSP1137-20121227|10183_1  [L=699]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (699 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        57  (0.0138957); expected 82.0 (0.02)
Passed bias filter:                       42  (0.0102389); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.13s 00:00:00.54 Elapsed: 00:00:00.65
# Mc/sec: 1419.39
//
Query:       MMETSP1137-20121227|10184_1  [L=248]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.2e-29  101.0   0.0    1.5e-29  100.8   0.0    1.1  1  TIGR03634 arc_protsome_B: proteasome endopeptidase complex, archaeal, beta subunit
    1.2e-05   22.8   0.0    1.3e-05   22.6   0.0    1.1  1  TIGR03633 arc_protsome_A: proteasome endopeptidase complex, archaeal, alpha subunit
    0.00012   19.7   0.0    0.00014   19.5   0.0    1.2  1  TIGR03690 20S_bact_beta: proteasome, beta subunit
    0.00032   18.3   0.2    0.00049   17.7   0.1    1.2  1  TIGR03692 ATP_dep_HslV: ATP-dependent protease HslVU, peptidase subunit


Domain annotation for each model (and alignments):
>> TIGR03634  arc_protsome_B: proteasome endopeptidase complex, archaeal, beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  100.8   0.0   1.4e-32   1.5e-29       2     184 ..      38     222 ..      37     223 .. 0.95

  Alignments for each domain:
  == domain 1    score: 100.8 bits;  conditional E-value: 1.4e-32
    TIGR03634   2 tTtvGikvkdgvvlAadkraslgnlvasknvkKvfkiddkialtiaGsvgdaqslvrllkaeaklyelrrkkkisvkalatllsnllksskflpflvqllvgGv.deegpklyslDplGs.iiedkytatGsGspvalgvLedeYeedlsleeakklavkaiksaieRDvasGdgidvvvitkdg 184
                  + ++ +  kd v +A+dkr  + n  +  ++kKvf+++dk+ + ++G+ +d q+l + ++   ++y+lr++++++ ka a+++s+ll++s+f p++ + +v+G+ d++ p l  +D lG+ +i d+++++G  ++  +g+ e+ Y++++  +   +  ++ + s ++RD  +G g  v ++t +g
  MMETSP1137-20121227|10184_1  38 AAVIAMAGKDCVAIASDKRYGIRNQTMGCQMKKVFQMNDKVLVGLTGLATDQQTLEQKFRFRSNMYRLREERDMNPKAFANMVSSLLYESRFGPYFCEPVVAGLlDDNTPFLSGMDLLGAqVITDDFMVAGDCTEALYGLCETLYTPQMGPDALFETLAQCLLSGVDRDCLAGWGGVVHILTPEG 222
                  67788899***********************************************************************************************7355789999******7478999***********************************************998888888776 PP

>> TIGR03633  arc_protsome_A: proteasome endopeptidase complex, archaeal, alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.6   0.0   1.3e-08   1.3e-05      29     112 ..      37     121 ..      33     183 .. 0.89

  Alignments for each domain:
  == domain 1    score: 22.6 bits;  conditional E-value: 1.3e-08
    TIGR03633  29 gttavGiktkegvvlivdkritsk.lleaesiekifkiDdhvgaataGlvaDarvlidrarveaqvnrltYdepievevlakkva 112
                  g++ + +  k+ v +++dkr   +      +++k+f+++d+v +  +Gl++D ++l ++ r  + ++rl+ +  ++ +++a  v+
  MMETSP1137-20121227|10184_1  37 GAAVIAMAGKDCVAIASDKRYGIRnQTMGCQMKKVFQMNDKVLVGLTGLATDQQTLEQKFRFRSNMYRLREERDMNPKAFANMVS 121
                  7889999*************754414445689*************************************9999888877777766 PP

>> TIGR03690  20S_bact_beta: proteasome, beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.0   1.4e-07   0.00014       4      93 ..      36     125 ..      33     235 .. 0.76

  Alignments for each domain:
  == domain 1    score: 19.5 bits;  conditional E-value: 1.4e-07
    TIGR03690   4 hgttivalaykgGvllaGdrratqGnliasrdvekvfkadeysavgiaGtaglavelvklfqvelehyekieGvplslegkanrlaamvr 93 
                  +g++++a+a k+ v +a d+r    n     +++kvf+ ++   vg++G a+    l + f+   + y   e + +  ++ an +++++ 
  MMETSP1137-20121227|10184_1  36 NGAAVIAMAGKDCVAIASDKRYGIRNQTMGCQMKKVFQMNDKVLVGLTGLATDQQTLEQKFRFRSNMYRLREERDMNPKAFANMVSSLLY 125
                  5889********************************************************************999998888887776654 PP

>> TIGR03692  ATP_dep_HslV: ATP-dependent protease HslVU, peptidase subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.1   4.7e-07   0.00049       2      66 ..      39     102 ..      38     112 .. 0.89

  Alignments for each domain:
  == domain 1    score: 17.7 bits;  conditional E-value: 4.7e-07
    TIGR03692   2 tilavrkngkvviagdGqvtlgetvlkenarkvrrlyegkvlaGfaGstadaltLferfeeklee 66 
                  +++a+  ++ v+ia+d +  + ++ +  + +kv ++ ++kvl+G+ G ++d  tL ++f  + ++
  MMETSP1137-20121227|10184_1  39 AVIAMAGKDCVAIASDKRYGIRNQTMGCQMKKVFQM-NDKVLVGLTGLATDQQTLEQKFRFRSNM 102
                  5789999999***********************997.799*****************99876655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (248 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       107  (0.0260848); expected 82.0 (0.02)
Passed bias filter:                       97  (0.023647); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.23u 0.14s 00:00:00.37 Elapsed: 00:00:00.36
# Mc/sec: 909.26
//
Query:       MMETSP1137-20121227|10185_1  [L=121]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.1e-07   28.0   0.0    2.2e-07   27.9   0.0    1.1  1  TIGR00115 tig: trigger factor
    0.00023   18.4   0.0     0.0003   18.0   0.0    1.1  1  TIGR03516 ppisom_GldI: peptidyl-prolyl isomerase, gliding motility-associated


Domain annotation for each model (and alignments):
>> TIGR00115  tig: trigger factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.9   0.0   1.1e-10   2.2e-07     148     240 ..       4     107 ..       1     120 [. 0.77

  Alignments for each domain:
  == domain 1    score: 27.9 bits;  conditional E-value: 1.1e-10
    TIGR00115 148 aaekgDivtidfegkv..dGeafeggka..edfelelgsgqfipgfeeqlvGmkaGeekeikvtFpedy.........haeelagkeaefkvtvkevkekelpeld 240
                  + + gD + + ++gk   d   f++     + fe++lg+gq+i g +++l Gm +Ge++ +++   +            ++   g + +f+v++ ++k+++  +  
  MMETSP1137-20121227|10185_1   4 KSKPGDKLSMHYTGKLysDCTVFDSSVErgDPFEFTLGQGQVIRGWDDGLRGMCVGEKRKLTIP--SGLgygddgsxtEHPGPGGATLQFEVELLDIKTPKPKKKK 107
                  77888999999999555566777765442377***************************77775..5444466667666777789**************9987655 PP

>> TIGR03516  ppisom_GldI: peptidyl-prolyl isomerase, gliding motility-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.0   1.5e-07    0.0003      85     176 ..       4      99 ..       2     100 .. 0.76

  Alignments for each domain:
  == domain 1    score: 18.0 bits;  conditional E-value: 1.5e-07
    TIGR03516  85 tpetgDlvsfeyeikaldgdviy.skeelg.pktykvdqedlisGlrdglklmkegeevtfllPsykayGyyGde.dkigs.nlpikstvtllnik 176
                   ++ gD  s++y+ k  ++ +++ s  e g p  +++ q ++i+G  dgl+ m  ge+  + +Ps  +yG  G   ++ g+   +++ +v ll+ik
  MMETSP1137-20121227|10185_1   4 KSKPGDKLSMHYTGKLYSDCTVFdSSVERGdPFEFTLGQGQVIRGWDDGLRGMCVGEKRKLTIPSGLGYGDDGSXtEHPGPgGATLQFEVELLDIK 99 
                  567899999999998888877763444554378899**********************************98864144454235666666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (121 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        68  (0.0165773); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.15u 0.13s 00:00:00.28 Elapsed: 00:00:00.26
# Mc/sec: 614.26
//
Query:       MMETSP1137-20121227|10186_1  [L=239]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.6e-62  206.5   0.0    1.6e-61  205.2   0.0    1.5  1  TIGR00364 TIGR00364: queuosine biosynthesis protein QueC


Domain annotation for each model (and alignments):
>> TIGR00364  TIGR00364: queuosine biosynthesis protein QueC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  205.2   0.0   3.9e-65   1.6e-61       1     201 []      11     228 ..      11     228 .. 0.90

  Alignments for each domain:
  == domain 1    score: 205.2 bits;  conditional E-value: 3.9e-65
    TIGR00364   1 avvvlSGGlDSttvllialkegeeveavtFdYgqrhskElevAkkiaealgik...........etvidlsllkelgksaLtkeeeeleqkeeeedelpktfVpgRNlvflslaasyAealgaeavilgvneedfsgyPDcreefvkalnkalelgtkkkvkieaPlieltKaeivklakelg...kldlviketyscyege.......eegCgkCesCklR 201
                  a+v++SGG+DS+t+l++al+ +e+ve+v+F+Ygqrh++Ele+  k ++ l+i            +t++d+ ++ ++g sa+tk+ e+      +++ +p+tfVp+RNl+fl++a ++A++ g++++++gv+e+d+sgyPDcr++ +kal++al+lg+++ + +++Pl++++Ka ++++a+ lg    +d +++ t+scy g        ++gC+kC++C+lR
  MMETSP1137-20121227|10186_1  11 ALVLFSGGQDSATCLAWALASYERVETVGFNYGQRHAVELEQRPKFVQGLRIAcpklvrgreivDTILDVPTITQIGDSAMTKDVEITM----DANGIPSTFVPARNLLFLTFAGALAYRRGIKHIVTGVCETDYSGYPDCRDDTIKALQVALSLGMATRLVLHTPLMFIDKAATWEMAHSLGgeaLVDAILELTHSCYLGVrtsrhpyGYGCDKCPACELR 228
                  789**************************************999988888763222222222226799*************99877665....33569************************************************************************************988778999**********999999999**********98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (239 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       117  (0.0285227); expected 82.0 (0.02)
Passed bias filter:                      116  (0.0282789); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.25u 0.17s 00:00:00.42 Elapsed: 00:00:00.48
# Mc/sec: 657.20
//
Query:       MMETSP1137-20121227|10187_1  [L=151]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (151 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        74  (0.01804); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.13s 00:00:00.30 Elapsed: 00:00:00.36
# Mc/sec: 553.62
//
Query:       MMETSP1137-20121227|10188_1  [L=368]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.3e-52  175.2   2.8    2.3e-51  173.1   2.0    1.9  1  TIGR02349 DnaJ_bact: chaperone protein DnaJ
    1.2e-16   58.1   3.1    1.8e-16   57.5   1.2    1.7  2  TIGR03835 termin_org_DnaJ: terminal organelle assembly protein TopJ


Domain annotation for each model (and alignments):
>> TIGR02349  DnaJ_bact: chaperone protein DnaJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  173.1   2.0   1.1e-54   2.3e-51       1     350 [.      43     355 ..      43     358 .. 0.89

  Alignments for each domain:
  == domain 1    score: 173.1 bits;  conditional E-value: 1.1e-54
    TIGR02349   1 dYYeiLgvskdAseeeikkAYrklakkyHPDrnkgekeaeekfkeineAyevLsdeekraqYDqfghagleggaggggagfegfeasefgdigdifeeffgggggsgrrrskarrgedlevelelsleeavkGvekeielerkekCetCkGsGakkgsklktCktCgGtGqvrkqqgtllgffqsqqtCseCkGeGkiikekCkeCkGkgrvkekkkievkiPaGvedgerlrvegkGeagenggesGdLyvevkvkehkiferegndllvevpisfvqailgeeievptleg.kvklkipagtqsgevlrlkgkGvkklksk.krGdllvkvkvevPkklskeekelleel 350
                  d YeiLg++ +A+++eik AYrkl+ +yHPD+n+    +e+k +e++eAye+Ls++ekr  YD  g a++++g+++   +          +  + +e++fg ggg    +++++rg+d+e+el ++le+ + G ek+ +++r+  C++Ck     k+ +l  C++C   G   k+++     + +     +  G G i++++ +  + ++  +e+k+++  i +G+ d+e +  + + e ++ g  +Gd+ +++k ++h +f+r+ ++l ++++i +  a lg e ++  l+g +v++k    t++g+ +r+kg+G++k  +  + Gdl+++++v++Pk++ ++  + le+l
  MMETSP1137-20121227|10188_1  43 DLYEILGLQPEANDREIKTAYRKLSIQYHPDKNP---GNEDKXREVTEAYEILSNKEKRILYDYKGIAAARKGGAE---E----------MGRSPMEMMFGMGGG----EQRSNRGRDMEIELPVTLEDLYVGNEKSATIKRRIVCRNCK-----KKPNLPRCRDC---GACPKEKK-----MVQ-----RRAGPGMIVQQEVQVDSKEKCKREEKTLSATIEKGMPDNEAITFKYESE-QKPGQIPGDVVLKLKTQPHATFKRSRENLSTKMTIPLRAALLGFETTISHLDGhQVSIKRTGVTKPGQSIRIKGEGMPKHGTPsEFGDLVITFTVDFPKEIGADLAAGLEQL 355
                  78*******************************9...679************************998888874222...2..........233567788885553....45689***********************************6.....45567888888...45555554.....333.....34799**********999*****************************99.688999***********************************************999***99*****************99888899***************99988888887 PP

>> TIGR03835  termin_org_DnaJ: terminal organelle assembly protein TopJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.5   1.2   8.8e-20   1.8e-16       3      67 ..      43     105 ..      41     112 .. 0.92
   2 ?   -0.8   0.0     0.037        75     689     807 ..     212     334 ..     188     339 .. 0.76

  Alignments for each domain:
  == domain 1    score: 57.5 bits;  conditional E-value: 8.8e-20
    TIGR03835   3 DyyevLgidrDadeqeikkafrkLakkyhPDrnkaadaakifaeineandvLsnPkkraryDkyG 67 
                  D ye+Lg++++a+++eik a+rkL+ +yhPD+n  +  ++  +e+ ea+++Lsn +kr  yD  G
  MMETSP1137-20121227|10188_1  43 DLYEILGLQPEANDREIKTAYRKLSIQYHPDKN--PGNEDKXREVTEAYEILSNKEKRILYDYKG 105
                  89*****************************98..6667778********************766 PP

  == domain 2    score: -0.8 bits;  conditional E-value: 0.037
    TIGR03835 689 vesttneaitLeikLsitsqleisaifkGfGhdfgkgl.GDLkvvlkvipsnffqikeddlhvaalvDPlvaynGGiidvfgivklikvkie..ggikvndlvkikdlGltk..tkykkGsLiv 807
                   e++  e  tL   + +    + ++ fk   ++ + ++ GD+ + lk  p   f+   ++l ++  + Pl a   G     +  +  +v i+  g +k ++ ++ik  G+ k  t  + G+L++
  MMETSP1137-20121227|10188_1 212 KEKCKREEKTLSATIEKGMPDNEAITFKYESEQKPGQIpGDVVLKLKTQPHATFKRSRENLSTKMTI-PLRAALLGFETTISHLDGHQVSIKrtGVTKPGQSIRIKGEGMPKhgTPSEFGDLVI 334
                  4678888888888888888888888888888888888889999999999999999999999988776.88888888888777777777777533667888888888888844225566677766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (368 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       112  (0.0273038); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.33u 0.18s 00:00:00.51 Elapsed: 00:00:00.33
# Mc/sec: 1471.88
//
Query:       MMETSP1137-20121227|10191_1  [L=130]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.7e-17   59.1   0.0    4.1e-17   59.0   0.0    1.0  1  TIGR01967 DEAH_box_HrpA: ATP-dependent helicase HrpA


Domain annotation for each model (and alignments):
>> TIGR01967  DEAH_box_HrpA: ATP-dependent helicase HrpA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.0   0.0   9.9e-21   4.1e-17     588     699 ..       2     114 ..       1     123 [. 0.92

  Alignments for each domain:
  == domain 1    score: 59.0 bits;  conditional E-value: 9.9e-21
    TIGR01967 588 qlkqvvkelglkvneepadydaihkallsGllsqiGakdekkeysGarn.rkflifPgselakksPkwvmaaelvetsklyarlvakiePeWveevaahlikknylePhwekk 699
                  q+++ ++ ++++++++p   d i k++ +G++ +    ++  +y+ +++ +  +i P+s+l   +P+wv+  elv tsk + r + +i+PeW+ ++a+h  kk+ +e    kk
  MMETSP1137-20121227|10191_1   2 QIENLMERVEIELKSNPNGDDGICKSITAGFFYHTAKLQKTLDYRTVKHpQTVHIXPSSSLHGSQPRWVVYHELVYTSKXFMRQIIEIKPEWLVDIAPHYYKKKDIEDNAGKK 114
                  88999999****************************999*******99735689**************************************************999766655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (130 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        92  (0.0224281); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.18u 0.16s 00:00:00.34 Elapsed: 00:00:00.30
# Mc/sec: 571.95
//
Query:       MMETSP1137-20121227|10192_1  [L=104]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (104 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       116  (0.0282789); expected 82.0 (0.02)
Passed bias filter:                      112  (0.0273038); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.16s 00:00:00.31 Elapsed: 00:00:00.28
# Mc/sec: 490.25
//
Query:       MMETSP1137-20121227|10193_1  [L=403]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.6e-05   20.8   0.5    2.7e-05   20.1   0.3    1.3  1  TIGR02917 PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein
    5.3e-05   20.8   0.4     0.0001   19.9   0.3    1.4  1  TIGR02552 LcrH_SycD: type III secretion low calcium response chaperone LcrH/SycD
     0.0002   18.0   0.0    0.00057   16.4   0.0    1.6  1  TIGR00990 3a0801s09: mitochondrial precursor proteins import receptor
     0.0013   15.5   0.0     0.0022   14.7   0.0    1.4  1  TIGR00115 tig: trigger factor
     0.0015   15.9   1.9     0.0033   14.8   1.3    1.5  1  TIGR02521 type_IV_pilW: type IV pilus biogenesis/stability protein PilW
  ------ inclusion threshold ------
      0.014   13.9   2.3      0.029   12.8   0.1    2.5  3  TIGR02795 tol_pal_ybgF: tol-pal system protein YbgF


Domain annotation for each model (and alignments):
>> TIGR02917  PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.3   3.9e-08   2.7e-05     335     398 ..     265     328 ..     255     336 .. 0.86

  Alignments for each domain:
  == domain 1    score: 20.1 bits;  conditional E-value: 3.9e-08
    TIGR02917 335 lAaiqLkegkvdeaiatlspalekdsddsallsllGeayLekgdfekAaeylakaseldPenaa 398
                  l a++L+ g+ ++ai+  + +l++ ++ +++l  lG+ay ++g++e+A ++l++a + +  +aa
  MMETSP1137-20121227|10193_1 265 LTASKLRCGQEKQAIKHGESVLATLPEHPKALYRLGQAYTQLGEYEQARRLLDRAEAASASDAA 328
                  5678999999999999999999999999999999999999999999999999999888777766 PP

>> TIGR02552  LcrH_SycD: type III secretion low calcium response chaperone LcrH/SycD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.3   1.5e-07    0.0001      57     120 ..     264     327 ..     259     342 .. 0.86

  Alignments for each domain:
  == domain 1    score: 19.9 bits;  conditional E-value: 1.5e-07
    TIGR02552  57 gLaaclqalkeyeeAiaaYalaaaldlddprpvyhaaecllalgekeeAlkaLklaieiaeeke 120
                   L a+  ++++ ++Ai+  +  +a  +++p+++y++++ +++lge+e+A++ L++a + +++++
  MMETSP1137-20121227|10193_1 264 NLTASKLRCGQEKQAIKHGESVLATLPEHPKALYRLGQAYTQLGEYEQARRLLDRAEAASASDA 327
                  6778888999999*****9999*********************************998888554 PP

>> TIGR00990  3a0801s09: mitochondrial precursor proteins import receptor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0   8.3e-07   0.00057     119     216 ..     202     317 ..     177     344 .. 0.78

  Alignments for each domain:
  == domain 1    score: 16.4 bits;  conditional E-value: 8.3e-07
    TIGR00990 119 seeerkkyaaklkekGnkayrnkdfdkaielysk...............alllkedPv.yysnraacynaladlekvvedttaaleldpdyvkalnrranaydqlgkyada..lld 216
                    ee+ + a   +e+Gn  +r ++f++a + y++               a++lk d      n++a     ++ ++ ++     l+  p++ kal r  +ay qlg y +a  lld
  MMETSP1137-20121227|10193_1 202 EFEEKVHKATLRRERGNTLFRGRHFKEADDEYEQgmrylffmphpteeeAVVLKRDVAlMNLNLTASKLRCGQEKQAIKHGESVLATLPEHPKALYRLGQAYTQLGEYEQArrLLD 317
                  55677777777889999999999999998888542222333333333338999999651567**********************************************99855666 PP

>> TIGR00115  tig: trigger factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0   3.3e-06    0.0022     148     207 ..      97     161 ..      54     172 .. 0.88

  Alignments for each domain:
  == domain 1    score: 14.7 bits;  conditional E-value: 3.3e-06
    TIGR00115 148 aaekgDivtidfegkv...dGeafeggkaedfel..elgsgqfipgfeeqlvGmkaGeekeikvt 207
                  aa+kg  +t+ ++g     +G  fe   a d++l   lg g ++pg++ +l+ mkaGe++ i v+
  MMETSP1137-20121227|10193_1  97 AAAKGALATLHIVGRLnsaKGTVFEXSRARDVPLlvILGRGVMVPGLDLALLSMKAGEKALIVVQ 161
                  8999999***9999776779***********99633789********************999887 PP

>> TIGR02521  type_IV_pilW: type IV pilus biogenesis/stability protein PilW
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   1.3   4.9e-06    0.0033     138     207 ..     262     331 ..     250     353 .. 0.86

  Alignments for each domain:
  == domain 1    score: 14.8 bits;  conditional E-value: 4.9e-06
    TIGR02521 138 yeNaglcalkagdtekaekyltralkidpkrpesllelaelklkkgqyaeAralleryqqtveqtaesLw 207
                  + N+    l+ g+ ++a k  +  l+  p+ p++l+ l + + + g+y +Ar ll+r ++ ++ +a +L 
  MMETSP1137-20121227|10193_1 262 NLNLTASKLRCGQEKQAIKHGESVLATLPEHPKALYRLGQAYTQLGEYEQARRLLDRAEAASASDAAMLS 331
                  456666778899*********************************************9999999998885 PP

>> TIGR02795  tol_pal_ybgF: tol-pal system protein YbgF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.1       5.8     4e+03      60      79 ..      61      80 ..      55      92 .. 0.64
   2 ?   -0.5   0.0      0.55   3.8e+02      45      66 ..     216     237 ..     215     240 .. 0.86
   3 ?   12.8   0.1   4.3e-05     0.029      53     101 ..     273     318 ..     262     334 .. 0.78

  Alignments for each domain:
  == domain 1    score: -3.7 bits;  conditional E-value: 5.8
    TIGR02795 60 kaflevvkkypksekapdal 79
                 +++++++++  + + + dal
  MMETSP1137-20121227|10193_1 61 EEYEKLMRDEREAQARKDAL 80
                 45666666666666666665 PP

  == domain 2    score: -0.5 bits;  conditional E-value: 0.55
    TIGR02795  45 lGealyakkkykdAakaflevv 66 
                  +G++l++ +++k+A +++++ +
  MMETSP1137-20121227|10193_1 216 RGNTLFRGRHFKEADDEYEQGM 237
                  5999999999****99999865 PP

  == domain 3    score: 12.8 bits;  conditional E-value: 4.3e-05
    TIGR02795  53 kkykdAakaflevvkkypksekapdallklgeslqelgqkekAkktlqe 101
                  ++ k+A+k+ ++v+++ p+++   +al++lg+++ +lg+ e+A++ l++
  MMETSP1137-20121227|10193_1 273 GQEKQAIKHGESVLATLPEHP---KALYRLGQAYTQLGEYEQARRLLDR 318
                  566778888888888777764...5799999999999999999988865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (403 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       209  (0.0509508); expected 82.0 (0.02)
Passed bias filter:                      115  (0.0280351); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.36u 0.11s 00:00:00.47 Elapsed: 00:00:00.60
# Mc/sec: 886.53
//
Query:       MMETSP1137-20121227|10194_1  [L=198]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (198 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        63  (0.0153584); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.13s 00:00:00.31 Elapsed: 00:00:00.44
# Mc/sec: 593.95
//
Query:       MMETSP1137-20121227|10195_1  [L=102]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (102 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        43  (0.0104827); expected 82.0 (0.02)
Passed bias filter:                       42  (0.0102389); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.15s 00:00:00.29 Elapsed: 00:00:00.39
# Mc/sec: 345.20
//
Query:       MMETSP1137-20121227|10196_1  [L=325]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (325 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        82  (0.0199902); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.16s 00:00:00.41 Elapsed: 00:00:00.78
# Mc/sec: 549.95
//
Query:       MMETSP1137-20121227|10197_1  [L=561]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (561 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        71  (0.0173086); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.15s 00:00:00.54 Elapsed: 00:00:00.48
# Mc/sec: 1542.62
//
Query:       MMETSP1137-20121227|10198_1  [L=296]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.1e-33  112.7   0.0    4.4e-33  112.2   0.0    1.2  1  TIGR00231 small_GTP: small GTP-binding protein domain
    1.3e-05   22.2   0.2    4.6e-05   20.4   0.1    1.8  1  TIGR03594 GTPase_EngA: ribosome-associated GTPase EngA
    1.4e-05   22.1   0.3    0.00012   19.0   0.1    2.1  2  TIGR02729 Obg_CgtA: Obg family GTPase CgtA
    6.6e-05   19.8   0.7    0.00052   16.9   0.5    2.0  1  TIGR03156 GTP_HflX: GTP-binding protein HflX
    0.00037   17.6   0.0      0.084    9.8   0.0    2.4  2  TIGR03597 GTPase_YqeH: ribosome biogenesis GTPase YqeH
     0.0005   17.1   0.3     0.0021   15.0   0.2    1.8  1  TIGR00450 mnmE_trmE_thdF: tRNA modification GTPase TrmE
     0.0005   16.4   0.0    0.00068   15.9   0.0    1.1  1  TIGR01393 lepA: GTP-binding protein LepA
    0.00063   17.2   0.0       0.22    8.8   0.0    2.3  2  TIGR00157 TIGR00157: ribosome small subunit-dependent GTPase A
      0.003   14.8   0.0      0.019   12.2   0.0    1.9  2  TIGR03596 GTPase_YlqF: ribosome biogenesis GTP-binding protein YlqF
     0.0033   14.0   0.0      0.004   13.7   0.0    1.1  1  TIGR00475 selB: selenocysteine-specific translation elongation factor
     0.0076   13.8   0.0       0.76    7.3   0.0    2.3  2  TIGR03598 GTPase_YsxC: ribosome biogenesis GTP-binding protein YsxC


Domain annotation for each model (and alignments):
>> TIGR00231  small_GTP: small GTP-binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  112.2   0.0   1.2e-35   4.4e-33       3     162 ..     108     265 ..     106     267 .. 0.98

  Alignments for each domain:
  == domain 1    score: 112.2 bits;  conditional E-value: 1.2e-35
    TIGR00231   3 eikivivGhvdvGKstLlnsllknkisiteskpgvtrdyvteqieedGktykvnllDTaGqedfdairrlyvreverslevvdivilvldveeglekqtkeiiheakkkgvpiilvvnKiDlkd.dlktkvkslfaklnaepiielsaetgknidklfklv 162
                   +ki++vG+ +vGKs+Ll ++++++ +++   ++++ d+  +    +Gkt+k++++DTaGqe+f+ +++ y+r   +++ v+d++ +  ++e +  ++ +e++ + ++++   +lv+nK+Dl + ++ +k++++fa+ +a  +ie+sa+ ++++ ++f+ v
  MMETSP1137-20121227|10198_1 108 IFKILLVGDAGVGKSSLLLRFTDDS-FEEHLASTIGVDFKVKTLCMRGKTVKLTIWDTAGQERFRTLTSSYYRGCHGIIVVFDVNER-ASFEHVR-QWLEELELYTTTQSCAKLLVGNKVDLANrEVTEKEATEFARQQAMLYIETSAKSRAGVAQAFDEV 265
                  68***********************.*************************************************************.*****99.**************************************************************987 PP

>> TIGR03594  GTPase_EngA: ribosome-associated GTPase EngA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   0.1   1.2e-07   4.6e-05       2     163 ..     110     272 ..      40     288 .. 0.62

  Alignments for each domain:
  == domain 1    score: 20.4 bits;  conditional E-value: 1.2e-07
    TIGR03594   2 vvaivGrpNVGKStLfNrlvkkr.kAivedtpgvTRDrkygeaelkgkefiliDTgGleeeedelekeireqaelaieeadvilfvvdareglteeDeeiaklLrksk.......kpvilvvNKvdnkkeeaeaaefyslGlge...vlaiSaehgrgikdLldeileelpee 163
                  ++ +vG   VGKS+L+ r++    +   ++t gv    k+  ++ k+ ++++ DT+G         ++ r+ ++   + ++ i++v+d++e+ + e+  + ++L++ +          +lv NKvd +++e   +e+ ++  ++   ++  Sa+ + g+++ +de+++++ ++
  MMETSP1137-20121227|10198_1 110 KILLVGDAGVGKSSLLLRFTDDSfEEHLASTIGVDFKVKTLCMRGKTVKLTIWDTAGQ--------ERFRTLTSSYYRGCHGIIVVFDVNERASFEH--VRQWLEELElytttqsCAKLLVGNKVDLANREVTEKEATEFARQQamlYIETSAKSRAGVAQAFDEVVQKILDT 272
                  4667777777777777777765544555666666555555555566666666677775........4455555566666666666666666443322..22222222211121113446666777766665555544444444421144557777777777777777666443 PP

>> TIGR02729  Obg_CgtA: Obg family GTPase CgtA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.0      0.14        53     157     178 ..     108     129 ..     102     132 .. 0.82
   2 !   19.0   0.1   3.3e-07   0.00012     236     327 ..     181     268 ..     177     270 .. 0.89

  Alignments for each domain:
  == domain 1    score: 0.5 bits;  conditional E-value: 0.14
    TIGR02729 157 ladvglvGlpnaGkStllsavs 178
                  +  + lvG   +GkS+ll +++
  MMETSP1137-20121227|10198_1 108 IFKILLVGDAGVGKSSLLLRFT 129
                  667889***********98766 PP

  == domain 2    score: 19.0 bits;  conditional E-value: 3.3e-07
    TIGR02729 236 trvllhlidlseedekdpvedleviekeLkkyseeLaekpelvvlnkidlleeeeleellkelkeelekkvlaisaltkegleellkkllel 327
                  ++ ++ + d++e      +e++++  +eL+ y++  ++  +l+v nk+dl ++e +e+ ++e+++++   ++++sa ++ g+ +  ++++++
  MMETSP1137-20121227|10198_1 181 CHGIIVVFDVNER---ASFEHVRQWLEELELYTT-TQSCAKLLVGNKVDLANREVTEKEATEFARQQAMLYIETSAKSRAGVAQAFDEVVQK 268
                  6677778888776...88999***********98.578899*************************99***************999999876 PP

>> TIGR03156  GTP_HflX: GTP-binding protein HflX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.5   1.4e-06   0.00052     188     348 ..     107     266 ..     101     270 .. 0.68

  Alignments for each domain:
  == domain 1    score: 16.9 bits;  conditional E-value: 1.4e-06
    TIGR03156 188 evptvalvGYTNaGKstllnaltkaevlaedklFAT..Ldpttrrlklpeee.evlltDTVGFirkLPheLveaFka.TLeevaeadlllhvvDasdeeaeeqieaveevLeelgaeei....pvllvlNkidkle.....eeeleeleekkeeavlvsAkkgegleeLleaie 348
                  +++++ lvG    GKs+ll ++t+++    ++l +T   d ++++l ++ ++ ++++ DT G          e F++ T    +    ++ v D+ +++  e   +v++ Leel++ ++     +llv Nk+d+++     +e++e +++++   +  sAk+++g+ +  +++ 
  MMETSP1137-20121227|10198_1 107 HIFKILLVGDAGVGKSSLLLRFTDDSFE--EHLASTigVDFKVKTLCMRGKTvKLTIWDTAGQ---------ERFRTlTSSYYRGCHGIIVVFDVNERASFE---HVRQWLEELELYTTtqscAKLLVGNKVDLANrevteKEATEFARQQAMLYIETSAKSRAGVAQAFDEVV 266
                  6889999999999999999999988764..455555226888888888766438899999994.........445521222345567799999998876655...566777777765543344899********995554333344444444668899*****99987655554 PP

>> TIGR03597  GTPase_YqeH: ribosome biogenesis GTPase YqeH
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.2   0.0    0.0028       1.1     157     214 ..     110     166 ..      99     176 .. 0.77
   2 !    9.8   0.0   0.00023     0.084      52     121 ..     168     244 ..     151     269 .. 0.75

  Alignments for each domain:
  == domain 1    score: 6.2 bits;  conditional E-value: 0.0028
    TIGR03597 157 dvyvvGvtNVGKSsliNkllklnkgkkkvittS.kfpgTTldlieipldkesvllDtpG 214
                  ++++vG + VGKSsl+ +  + + +++ + t+   f+  Tl ++   +  + ++ Dt+G
  MMETSP1137-20121227|10198_1 110 KILLVGDAGVGKSSLLLRFTDDSFEEHLASTIGvDFKVKTLCMRGKTV--KLTIWDTAG 166
                  6789************99987766665544543268888888777766..677888877 PP

  == domain 2    score: 9.8 bits;  conditional E-value: 0.00023
    TIGR03597  52 edflnllnslsekkalvvavvDi.....fdlegslikelkrfvken..kvllvvNKidllpksvklekikewlkkea 121
                  e f+ l +s+ +  + ++ v+D+     f+    +++el+ ++ ++    llv+NK+dl +++v++++ +e+ +++a
  MMETSP1137-20121227|10198_1 168 ERFRTLTSSYYRGCHGIIVVFDVnerasFEHVRQWLEELELYTTTQscAKLLVGNKVDLANREVTEKEATEFARQQA 244
                  556666666666666777777753332244555678887766555411569*****************999988876 PP

>> TIGR00450  mnmE_trmE_thdF: tRNA modification GTPase TrmE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.2   5.7e-06    0.0021     206     365 ..     105     267 ..      85     286 .. 0.59

  Alignments for each domain:
  == domain 1    score: 15.0 bits;  conditional E-value: 5.7e-06
    TIGR00450 206 lkdglklaivGktNvGKSSLlNallkkdraiVsdikGtt.RDvvEedleleGilvk..llDtAGiReaadkvEklGiekslkaikeadlvlyvlDaskpltkdd..elii....tlkkkkkdlllvlNKiDLaeleilkselk....ltvsllsakqlkikelvdlltekina 365
                  l++ +k+ +vG++ vGKSSLl  + +   +   ++  t   D   + l + G +vk  + DtAG        E+     + +  + +  ++ v+D+++    ++  + ++    ++  +    llv NK DLa+ e++++e +     + +l + ++ k++++v +  +++ +
  MMETSP1137-20121227|10198_1 105 LDHIFKILLVGDAGVGKSSLLLRFTD--DSFEEHLASTIgVDFKVKTLCMRGKTVKltIWDTAGQ-------ERFRT-LTSSYYRGCHGIIVVFDVNERASFEHvrQWLEelelYTTTQSCAKLLVGNKVDLANREVTEKEATefarQQAMLYIETSAKSRAGVAQAFDEVVQ 267
                  77889***************977754..45555554443158888899999988873367***94.......33322.255677889999999998765543332223330100233344455899******94444433332000022222223333444444433333333 PP

>> TIGR01393  lepA: GTP-binding protein LepA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   1.8e-06   0.00068      65     180 ..     152     270 ..     136     283 .. 0.79

  Alignments for each domain:
  == domain 1    score: 15.9 bits;  conditional E-value: 1.8e-06
    TIGR01393  65 kdgeeyvlnlidtPGhvdfsyevsrslaaceGalllvdaaqGveaqtlanvylale.....kdleiiPvinkidlPsadvervkkeieeviGldaeeailvsaktGigieelleaivkkvp 180
                  + g++ +l + dt G   f    s     c G +++ d         + +    le     +    + v nk+dl   + e ++ke  e+   +a+  i  sak+  g+ + ++++v+k+ 
  MMETSP1137-20121227|10198_1 152 MRGKTVKLTIWDTAGQERFRTLTSSYYRGCHGIIVVFDVNERASFEHVRQWLEELElytttQSCAKLLVGNKVDLA--NREVTEKEATEFARQQAMLYIETSAKSRAGVAQAFDEVVQKIL 270
                  5689999*******************************98877666555444333311111445556799*****5..567788999*******************************995 PP

>> TIGR00157  TIGR00157: ribosome small subunit-dependent GTPase A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.8   0.0    0.0006      0.22     126     142 ..     112     128 ..      90     142 .. 0.85
   2 !    6.4   0.0    0.0034       1.3      56     123 ..     201     268 ..     147     270 .. 0.78

  Alignments for each domain:
  == domain 1    score: 8.8 bits;  conditional E-value: 0.0006
    TIGR00157 126 vfaGqSGVGKSSLiNll 142
                  +++G +GVGKSSL+ + 
  MMETSP1137-20121227|10198_1 112 LLVGDAGVGKSSLLLRF 128
                  589**********9665 PP

  == domain 2    score: 6.4 bits;  conditional E-value: 0.0034
    TIGR00157  56 alldrlLvvaeakniepiivlnkkdlleeedaekeqleelknlgYkvllvsvkneegleelkeklkkr 123
                  + l+ l +++ ++  ++++v nk+dl + e +eke +e  ++     + +s+k++ g+++ ++++ ++
  MMETSP1137-20121227|10198_1 201 QWLEELELYTTTQSCAKLLVGNKVDLANREVTEKEATEFARQQAMLYIETSAKSRAGVAQAFDEVVQK 268
                  446666678889999******************9999999999999999********99988877665 PP

>> TIGR03596  GTPase_YlqF: ribosome biogenesis GTP-binding protein YlqF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.0      0.29   1.1e+02     119     138 ..     109     128 ..     103     143 .. 0.84
   2 !   12.2   0.0     5e-05     0.019      42     100 ..     208     268 ..     202     284 .. 0.73

  Alignments for each domain:
  == domain 1    score: -0.1 bits;  conditional E-value: 0.29
    TIGR03596 119 iralvvGiPNvGKStliNrl 138
                  +++l vG   vGKS+l+ r+
  MMETSP1137-20121227|10198_1 109 FKILLVGDAGVGKSSLLLRF 128
                  7899999999*****98666 PP

  == domain 2    score: 12.2 bits;  conditional E-value: 5e-05
    TIGR03596  42 leelvknkprlivlnkaDladpektkkwlkyfe.ekgkkalavnakkkkkvkkilk.aikk 100
                  l +++++  +l+v nk Dla++e+t+k  + f  ++ +  + ++ak++++v++  +  ++k
  MMETSP1137-20121227|10198_1 208 LYTTTQSCAKLLVGNKVDLANREVTEKEATEFArQQAMLYIETSAKSRAGVAQAFDeVVQK 268
                  5666778889*****************9999994555566667777777775444303344 PP

>> TIGR00475  selB: selenocysteine-specific translation elongation factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   0.0   1.1e-05     0.004      50     173 ..     157     278 ..     115     286 .. 0.81

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 1.1e-05
    TIGR00475  50 kvlgliDvPGHekflknalagvggidaalLvvdadeGv....kaqtkEHLavlkllgikelivvltKaDrvdeeevkevEeelkeileeeeflknakivkvsAktGqGie.eLkkelknLlesldakdk 173
                   +l++ D  G e+f     +   g +++++v d +e        q  E L +   ++    + v +K+D ++ e    +E+e  e+ +++ +l    ++ +sAk   G+  +  + ++++l+  d ++ 
  MMETSP1137-20121227|10198_1 157 VKLTIWDTAGQERFRTLTSSYYRGCHGIIVVFDVNERAsfehVRQWLEELELYTTTQSCAKLLVGNKVDLANRE---VTEKEATEFARQQAML----YIETSAKSRAGVAqAFDEVVQKILDTPDLLNT 278
                  568999*******9888888899************97622225699999999999999999************9...899*************....999**999988751345555556655555443 PP

>> TIGR03598  GTPase_YsxC: ribosome biogenesis GTP-binding protein YsxC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.3   0.0     0.002      0.76      10      40 ..     100     130 ..      94     142 .. 0.84
   2 ?    4.3   0.0     0.017       6.4     122     183 ..     207     263 ..     163     266 .. 0.66

  Alignments for each domain:
  == domain 1    score: 7.3 bits;  conditional E-value: 0.002
    TIGR03598  10 lkqlpedklpeiafaGrSNvGKSsliNaLtn 40 
                  +++ p d+  +i ++G   vGKSsl+  +t+
  MMETSP1137-20121227|10198_1 100 MNSAPLDHIFKILLVGDAGVGKSSLLLRFTD 130
                  5678889999***************977765 PP

  == domain 2    score: 4.3 bits;  conditional E-value: 0.017
    TIGR03598 122 lellkeakipvlvvltKaDklkkselkkalkkvkkelkkeeekvevllfSslkkegieelka 183
                    +++++++  l+v +K+D  +++ ++k++++++++ ++      ++ +S++++ g++++ +
  MMETSP1137-20121227|10198_1 207 ELYTTTQSCAKLLVGNKVDLANREVTEKEATEFARQQAML-----YIETSAKSRAGVAQAFD 263
                  3344556677889999999999999999888887755544.....67889999999887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (296 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       228  (0.0555826); expected 82.0 (0.02)
Passed bias filter:                      189  (0.0460751); expected 82.0 (0.02)
Passed Vit filter:                        34  (0.00828864); expected 4.1 (0.001)
Passed Fwd filter:                        11  (0.00268162); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.40u 0.14s 00:00:00.54 Elapsed: 00:00:00.54
# Mc/sec: 723.50
//
Query:       MMETSP1137-20121227|10199_1  [L=117]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (117 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        44  (0.0107265); expected 82.0 (0.02)
Passed bias filter:                       31  (0.00755729); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.17s 00:00:00.32 Elapsed: 00:00:00.30
# Mc/sec: 514.76
//
Query:       MMETSP1137-20121227|10200_1  [L=276]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.3e-18   64.6   3.4    2.8e-18   64.3   2.1    1.3  1  TIGR01830 3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase
    4.8e-17   60.3   2.4      6e-17   59.9   1.3    1.3  1  TIGR01829 AcAcCoA_reduct: acetoacetyl-CoA reductase
    1.3e-16   58.5   0.4    2.4e-16   57.6   0.3    1.4  1  TIGR01963 PHB_DH: 3-hydroxybutyrate dehydrogenase
      1e-13   49.1   2.4    1.5e-13   48.6   1.5    1.3  1  TIGR02415 23BDH: acetoin reductases
    1.6e-12   45.3   3.1    2.2e-12   44.9   2.1    1.2  1  TIGR01832 kduD: 2-deoxy-D-gluconate 3-dehydrogenase
    1.6e-12   45.0   2.4    2.2e-12   44.6   1.6    1.2  1  TIGR03325 BphB_TodD: cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase
    2.3e-11   41.5   1.1      7e-11   39.9   0.2    2.1  2  TIGR03971 SDR_subfam_1: oxidoreductase, SDR family
    4.8e-11   40.3   3.9    6.8e-11   39.8   2.7    1.2  1  TIGR03206 benzo_BadH: 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase
    2.6e-10   37.2   2.2    2.8e-10   37.1   0.5    1.6  2  TIGR02632 RhaD_aldol-ADH: rhamnulose-1-phosphate aldolase/alcohol dehydrogenase
    1.6e-07   28.9   0.1    1.8e-06   25.4   0.0    2.0  1  TIGR01500 sepiapter_red: sepiapterin reductase
    1.9e-06   25.3   4.0    1.1e-05   22.7   2.6    2.1  1  TIGR01831 fabG_rel: putative 3-oxoacyl-(acyl-carrier-protein) reductase
    7.2e-05   19.6   0.4    0.00014   18.7   0.3    1.6  1  TIGR03466 HpnA: hopanoid-associated sugar epimerase
    0.00042   17.8   0.1    0.00091   16.7   0.0    1.6  1  TIGR01777 yfcH: TIGR01777 family protein
    0.00098   16.5   0.2     0.0015   16.0   0.1    1.4  1  TIGR01289 LPOR: light-dependent protochlorophyllide reductase
     0.0052   13.7   0.0      0.012   12.6   0.0    1.7  1  TIGR01214 rmlD: dTDP-4-dehydrorhamnose reductase
     0.0054   13.8   0.1     0.0089   13.1   0.1    1.3  1  TIGR01746 Thioester-redct: thioester reductase domain


Domain annotation for each model (and alignments):
>> TIGR01830  3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.3   2.1   1.1e-20   2.8e-18       2     186 ..      23     203 ..      22     233 .. 0.82

  Alignments for each domain:
  == domain 1    score: 64.3 bits;  conditional E-value: 1.1e-20
    TIGR01830   2 lvtGasrgiGkaiakklakegakvviterskeekaeelaeelkeagvkaaavkldvsdeeevkelveeveeelgeidilvnnAGitr..DklllrmkeedwdevikvnLkgvfnvtkavlkkmikkrsGriinissvvgllG...nagqanYaasKaGligltkslakElasrnitvnavaPGfietdmt 186
                   +tGas g+G +++k++a++g kv    rs+++++++++        + ++v+   ++++++ +++++   +  ++dil+nnAG+    D+ l +++ e  ++  +vn  g  +vtka + +m     G++i is  +g +    + g   Y asK  +  + k+la +l  ++i v ++ PG++ td+ 
  MMETSP1137-20121227|10200_1  23 AITGASGGMGLELVKQFAARGNKVYALCRSTKDTLKAIEG-------DITVVEGIDTSSDSCGDALASSALSGVTVDILINNAGMLGgfDQSLEKISIETMRKAFEVNTYGPLRVTKALMGQMSP--GGKVIIISTSIGSIAettSGGNYAYRASKCAVNMIGKTLAGDLKPKEIAVRMINPGLVITDFG 203
                  59**********************9996655444444333.......3444444445667788888887788889*********96444**********************************97..89999998776665411145666778**********************************985 PP

>> TIGR01829  AcAcCoA_reduct: acetoacetyl-CoA reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.9   1.3   2.3e-19     6e-17       5     187 ..      24     202 ..      21     212 .. 0.86

  Alignments for each domain:
  == domain 1    score: 59.9 bits;  conditional E-value: 2.3e-19
    TIGR01829   5 vtGglgGiGtaickrlakdGykvvanvapneerakewlqekevegfdvavvkadvssfeeakaavakveaelGpvdvlvnnaGit..rdavfkkmtkeqWeevidtnlnsvfnvtrpviegmlergfGriinissvnGl...kGqfGqanysaakaGliGftkalaqegakkgvtvnviaPGyiatem 187
                  +tG++gG+G ++ k++a+ G kv a +++ +++        ++ + d++vv++  +s++++ +a+a+      +vd+l+nnaG+    d+ ++k++ e   +  ++n  + + vt+ ++ +m     G++i is+  G        G   y a+k  +  + k+la +   k ++v +i PG + t+ 
  MMETSP1137-20121227|10200_1  24 ITGASGGMGLELVKQFAARGNKVYALCRSTKDTL-------KAIEGDITVVEGIDTSSDSCGDALASSALSGVTVDILINNAGMLggFDQSLEKISIETMRKAFEVNTYGPLRVTKALMGQMSPG--GKVIIISTSIGSiaeTTSGGNYAYRASKCAVNMIGKTLAGDLKPKEIAVRMINPGLVITDF 202
                  8**************************9655544.......4556788999999999**********999999**********96336**********************************875..6677666444431113345777889********************************9985 PP

>> TIGR01963  PHB_DH: 3-hydroxybutyrate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.6   0.3   9.2e-19   2.4e-16       3     186 ..      21     201 ..      19     206 .. 0.82

  Alignments for each domain:
  == domain 1    score: 57.6 bits;  conditional E-value: 9.2e-19
    TIGR01963   3 valvtGaasGiglaiakelaaaGakvvvndle.eeaaeaaakeleeaggevlalkadvtkeeeiadlieavaaefgsldiLvnnAGiq..hvapieefptekfekiiavnltsafhtiraalpimkkqgwGriin..iasvhglvasafKsaYvaaKHglvGltKvlAlEvAetgitanaicPgyvrtp 186
                  ++ +tGa++G+gl++ k++aa G kv     + +++++a++ +++      +   +d t+++++ d ++  a +  ++diL+nnAG+   + + +e+  +e+  k  +vn  +++++++a + +m   g   ii   i+s+    +s    aY a+K ++  + K+lA +   ++i + +i+Pg v t 
  MMETSP1137-20121227|10200_1  21 TVAITGASGGMGLELVKQFAARGNKVYALCRStKDTLKAIEGDIT------VVEGID-TSSDSCGDALASSALSGVTVDILINNAGMLggFDQSLEKISIETMRKAFEVNTYGPLRVTKALMGQMSPGGKVIIIStsIGSIA-ETTSGGNYAYRASKCAVNMIGKTLAGDLKPKEIAVRMINPGLVITD 201
                  799***********************8765552444444444443......333456.556679999999999999**********95336799*******************************98866555532244443.35688999***********************************996 PP

>> TIGR02415  23BDH: acetoin reductases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.6   1.5   5.7e-16   1.5e-13       4     208 ..      23     222 ..      20     238 .. 0.76

  Alignments for each domain:
  == domain 1    score: 48.6 bits;  conditional E-value: 5.7e-16
    TIGR02415   4 lvtGaaqGiGkaiaerLakdGfav.avadlneetaketakelkekgtkavavkldvsdkseveeaveqaveklGeldvlvnnaGv..alvtpileiteeeleklynvnvkgvlfGiqaaaekfkklkhkGk.iinaasiagvegspels..aysstkfavrgltqtaakeLakkgitvnayaPGivktemreeideklaelagkeigekle 208
                   +tGa+ G+G ++++++a+ G +v a++     + k+t k ++  g   v+  +d s+ s  +++ ++a +   ++d+l+nnaG+  ++ +++++i+ e++ k ++vn  g l   +a + +   +  +Gk ii ++si ++  +   +  ay ++k av  + +t a +L +k i+v   +PG+v t+     d+ ++++ gk++ ++++
  MMETSP1137-20121227|10200_1  23 AITGASGGMGLELVKQFAARGNKVyALCR----STKDTLKAIE--GDITVVEGIDTSSDSCGDALASSALSG-VTVDILINNAGMlgGFDQSLEKISIETMRKAFEVNTYGPLRVTKALMGQ---MSPGGKvIIISTSIGSIAETTSGGnyAYRASKCAVNMIGKTLAGDLKPKEIAVRMINPGLVITDFGPGADA-ITKMGGKDVVSATN 222
                  59********************9933443....3344444443..455677789988877666666666665.589********9555789******************9998877777665...55677735678898887666554422788**********************************98776553.55666666655555 PP

>> TIGR01832  kduD: 2-deoxy-D-gluconate 3-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.9   2.1   8.5e-15   2.2e-12       8     189 ..      22     201 ..      18     247 .. 0.84

  Alignments for each domain:
  == domain 1    score: 44.9 bits;  conditional E-value: 8.5e-15
    TIGR01832   8 alvtGantGlGqgiavglaeaGadivgvgiselsetqekvealGrkflslkadladeeaakalvdeaveeagkidilvnnaGiirr..edavefsekdwddvlnvnlkavfllsqavakkllkqGrkgkiinia.sllsfqGGir..vpsytasksavaGltkllanewakkginvnaiaPGyletn 189
                  + +tGa+ G+G  ++  +a+ G ++ +  +s +++t +++e  G       +d ++ +  +al ++a+  +  +dil+nnaG++    +  +++s +   + ++vn    + +++a+  ++   G   k+i i+ s+ s          +y ask av  + k+la ++  k+i v  i PG + t+
  MMETSP1137-20121227|10200_1  22 VAITGASGGMGLELVKQFAARGNKVYALCRS-TKDTLKAIE--GDITVVEGIDTSSDSCGDALASSALSGV-TVDILINNAGMLGGfdQSLEKISIETMRKAFEVNTYGPLRVTKALMGQMSPGG---KVIIIStSIGSIAETTSggNYAYRASKCAVNMIGKTLAGDLKPKEIAVRMINPGLVITD 201
                  679*********************9998876.567888886..5566666789999999999999988877.9**********976214467899999******************999986655...655553244454433331135899*******************************9997 PP

>> TIGR03325  BphB_TodD: cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.6   1.6   8.5e-15   2.2e-12       8     192 ..      22     203 ..      17     252 .. 0.81

  Alignments for each domain:
  == domain 1    score: 44.6 bits;  conditional E-value: 8.5e-15
    TIGR03325   8 vlvtggasglgralvdrfvaegarvavldksaagleeleaahgdkvvgvegdvrllddhkeavarcveafgkldtlipnagiw.dystalvdipddrideafdevfeinvkgyllavkaalpalvasrgsviftvsnagf...ypngggalytaakhavvglvkelayelapy.vrvngvapgglstdlr 192
                  v +tg + g+g  lv++f a g +v  l +s++  + l+a+ gd +  veg   + d+  +a a    +   +d+li+nag+   +  +l +i  + + +a    fe+n  g l   ka ++++    g vi+  +  g     ++gg   y a+k av  + k la +l p+ + v  + pg + td+ 
  MMETSP1137-20121227|10200_1  22 VAITGASGGMGLELVKQFAARGNKVYALCRSTK--DTLKAIEGD-ITVVEGIDTSSDSCGDALASSALSGVTVDILINNAGMLgGFDQSLEKISIETMRKA----FEVNTYGPLRVTKALMGQMSPG-GKVIIISTSIGSiaeTTSGGNYAYRASKCAVNMIGKTLAGDLKPKeIAVRMINPGLVITDFG 203
                  789****************************98..578898888.55689988999999999999999999**********97247777777776666665....679**********999987544.44444333344311156788999********9999********9659********9999973 PP

>> TIGR03971  SDR_subfam_1: oxidoreductase, SDR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0      0.99   2.5e+02       8      42 ..      24      56 ..      20      74 .. 0.79
   2 !   39.9   0.2   2.7e-13     7e-11      93     204 ..      90     203 ..      74     253 .. 0.80

  Alignments for each domain:
  == domain 1    score: -1.3 bits;  conditional E-value: 0.99
    TIGR03971  8 itGaarGqGraeavrlaaeGadiiaidlceplsdv 42
                 itGa+ G G     ++aa G  + a  lc++ +d+
  MMETSP1137-20121227|10200_1 24 ITGASGGMGLELVKQFAARGNKVYA--LCRSTKDT 56
                 8999999999999999999988876..56666665 PP

  == domain 2    score: 39.9 bits;  conditional E-value: 2.7e-13
    TIGR03971  93 rldvvvanaGvls.ygrafe.lseeqWdtvldvnlkGvWktvkavvPalierknGGsiiivssvaglka.lpgla..hyaaakhGlvgltktlanelaeygirvnsihPtsvdtami 204
                   +d++++naG+l+ + ++ e +s e  ++  +vn  G  ++ ka + ++     GG +ii+s++ g  a +   +   y a+k  +  + ktla +l + +i v  i+P  v t   
  MMETSP1137-20121227|10200_1  90 TVDILINNAGMLGgFDQSLEkISIETMRKAFEVNTYGPLRVTKALMGQM---SPGGKVIIISTSIGSIAeTTSGGnyAYRASKCAVNMIGKTLAGDLKPKEIAVRMINPGLVITDFG 203
                  58*********9647777765999********************99998...45777777776666544144444115679*****************************9999764 PP

>> TIGR03206  benzo_BadH: 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.8   2.7   2.6e-13   6.8e-11       5     187 ..      21     200 ..      18     225 .. 0.81

  Alignments for each domain:
  == domain 1    score: 39.8 bits;  conditional E-value: 2.6e-13
    TIGR03206   5 vaivtgggggiggaicrrfaeegakvavldlnaeaaekvaaairekggkaeavavditdrasvdaavaaaeealgpvdvlvnnagw.dvl.kpflktekaewerliainltgalymhhavlkgmverkagrivnia.sdaarvgssgeavyaackgglvafsktlarelarhgitvnvvcpgptdt 187
                  ++ +tg +gg+g  + ++fa  g kv  l       +   +++++  g+   v    t+ +s   a+a++  +   vd+l+nnag    + +++ k    +  +   +n +g l + +a++  m   ++  i+  +    a + s g+  y a k  +  + ktla +l  ++i+v ++ pg   t
  MMETSP1137-20121227|10200_1  21 TVAITGASGGMGLELVKQFAARGNKVYALC------RSTKDTLKAIEGDITVVEGIDTSSDSCGDALASSALSGVTVDILINNAGMlGGFdQSLEKISIETMRKAFEVNTYGPLRVTKALMGQMSPGGKVIIISTSiGSIAETTSGGNYAYRASKCAVNMIGKTLAGDLKPKEIAVRMINPGLVIT 200
                  7889*********************86553......3344556666677777766668889999999999999899********9632331455667777888999***************9999877766665431346788999***********************************97554 PP

>> TIGR02632  RhaD_aldol-ADH: rhamnulose-1-phosphate aldolase/alcohol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.1   0.5   1.1e-12   2.8e-10     415     600 ..      21     199 ..      11     206 .. 0.79
   2 ?   -1.6   0.0      0.53   1.4e+02     486     508 ..     207     229 ..     203     243 .. 0.82

  Alignments for each domain:
  == domain 1    score: 37.1 bits;  conditional E-value: 1.1e-12
    TIGR02632 415 rvalvtGgasGiGrevarrlvdeGahvvla.dldaeaaeavaaelvdkfGadkavalkldvtdeeavkaafaevalayGGvdivvnnaGiavs..kpleeteleeWdlnldilatGyflvareaarllrkqglggnlvfia.sknavv..akknalaysaakaaeahlvrllaielaelgirvntvaPdavl 600
                    +++tG+++G+G e+ ++++++G  v       +++++a++ +++        v   +d t+ ++   a+a  al+   vdi++nnaG+     + le+ + e+  + +++++ G   v++    l+ + + gg++++i+ s  +++  ++ ++ ay a+k a + + ++la +l ++ i v  ++P  v+
  MMETSP1137-20121227|10200_1  21 T-VAITGASGGMGLELVKQFAARGNKVYALcRSTKDTLKAIEGDIT--------VVEGID-TSSDSCGDALASSALSGVTVDILINNAGMLGGfdQSLEKISIETMRKAFEVNTYGPLRVTKA---LMGQMSPGGKVIIIStSIGSIAetTSGGNYAYRASKCAVNMIGKTLAGDLKPKEIAVRMINPGLVI 199
                  3.568********************996440444555555555555........434455.788999***********************8652155677779**************999875...56666678887777515555542145689*********************************9887 PP

  == domain 2    score: -1.6 bits;  conditional E-value: 0.53
    TIGR02632 486 evalayGGvdivvnnaGiavskp 508
                  ++  + GG d+v ++ Gi+ + +
  MMETSP1137-20121227|10200_1 207 DAITKMGGKDVVSATNGIVEAID 229
                  677889***********988765 PP

>> TIGR01500  sepiapter_red: sepiapterin reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.4   0.0   6.9e-09   1.8e-06       3     199 ..      22     201 ..      20     211 .. 0.77

  Alignments for each domain:
  == domain 1    score: 25.4 bits;  conditional E-value: 6.9e-09
    TIGR01500   3 llvtGasrGfGrelaqelakrlkaegsvlvLlaRn.deaLkeskaeieaevsalsvdlvsldleaakdvedllkaleesikkeeyerillinnaGtlgdvskrekelsDsknvqkyydsnvtslvvltsellkklkelqglektvvnlssLcaikpfkswa..lYCaskaaRdmffqvLaleek.edvkvLnYapGvlDtd 199
                  + +tGas G+G el +++a     +g ++  l R+ +++Lk  + +i+            +d ++     d  +  ++s    +    +linnaG lg   +  +++s  + ++k ++ n++  + +t  l+ ++   +g +++++ + s+ +i+   s     Y ask a +m  + La + k +++ v    pG + td
  MMETSP1137-20121227|10200_1  22 VAITGASGGMGLELVKQFAA----RGNKVYALCRStKDTLKAIEGDITV--------VEGIDTSS-----DSCGDALASSALSGVTVDILINNAGMLGGFDQSLEKIS-IETMRKAFEVNTYGPLRVTKALMGQMS--PGGKVIII-STSIGSIAETTSGGnyAYRASKCAVNMIGKTLAGDLKpKEIAVRMINPGLVITD 201
                  568********999888887....5666655555415667776666665........22333333.....335555677778888899****************9998.6889********************999..77766666.55677777666544115789****************988899988889988887 PP

>> TIGR01831  fabG_rel: putative 3-oxoacyl-(acyl-carrier-protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.7   2.6   4.4e-08   1.1e-05       1     185 [.      22     201 ..      22     212 .. 0.77

  Alignments for each domain:
  == domain 1    score: 22.7 bits;  conditional E-value: 4.4e-08
    TIGR01831   1 vlvtgasrgigraialklaadgfeiavhyrsdradaeesvaairaqggnarllkfdvadrvavrevleadiaehgayygvvlnagi..ardaafpalseedwdavietnldgfynvihplvmpmirarkggriitla.svsgvmg..nrgqvnysaakagligatkalavelakrkitvnciapglidte 185
                  v +tgas g+g  +  ++aa g ++   +rs +        +++a  g+  +++   +   ++ ++l +   +  +   ++ nag+    d+++  +s e     +e n  g   v + l   m ++  gg++i ++ s+  ++     g+  y a+k  +    k+la +l  + i+v  i pgl+ t+
  MMETSP1137-20121227|10200_1  22 VAITGASGGMGLELVKQFAARGNKVYALCRSTKD-------TLKAIEGDITVVEGIDTSSDSCGDALASSALSGVTVDILINNAGMlgGFDQSLEKISIETMRKAFEVNTYGPLRVTKAL---MGQMSPGGKVIIIStSIGSIAEttSGGNYAYRASKCAVNMIGKTLAGDLKPKEIAVRMINPGLVITD 201
                  679**********************999998654.......4555556666666555667889999977655555555567788883335888888888888888888887777777765...567789***99997255556541145788899*****99999**********************998 PP

>> TIGR03466  HpnA: hopanoid-associated sugar epimerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.3   5.3e-07   0.00014       2      57 ..      21      76 ..      20     206 .. 0.78

  Alignments for each domain:
  == domain 1    score: 18.7 bits;  conditional E-value: 5.3e-07
    TIGR03466  2 kvlvtGatGFvGsavvrllleeGeevrvlvrktsdrrnleeldvEiveGdlkdeas 57
                 +v +tGa+G +G ++v++ +++G++v +l r+t d+    e d+ +veG  ++++s
  MMETSP1137-20121227|10200_1 21 TVAITGASGGMGLELVKQFAARGNKVYALCRSTKDTLKAIEGDITVVEGIDTSSDS 76
                 5789*****************************99888777778888885444444 PP

>> TIGR01777  yfcH: TIGR01777 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0   3.6e-06   0.00091       1      42 [.      22      62 ..      22     100 .. 0.70

  Alignments for each domain:
  == domain 1    score: 16.7 bits;  conditional E-value: 3.6e-06
    TIGR01777  1 vlitGgtGliGralveelekkghevviltrskekekeekkes 42
                 v+itG++G +G +lv+++ ++g++v++l rs++++ ++  e 
  MMETSP1137-20121227|10200_1 22 VAITGASGGMGLELVKQFAARGNKVYALCRSTKDTLKAI-EG 62
                 78*****************************99655544.33 PP

>> TIGR01289  LPOR: light-dependent protochlorophyllide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.1   5.7e-06    0.0015       4      45 ..      20      60 ..      17     167 .. 0.82

  Alignments for each domain:
  == domain 1    score: 16.0 bits;  conditional E-value: 5.7e-06
    TIGR01289  4 ptviitgassglglaaakalvekgkwhvvmacrdlekaekaa 45
                 +tv itgas g+gl+  k ++++g  +v   cr  + + ka 
  MMETSP1137-20121227|10200_1 20 TTVAITGASGGMGLELVKQFAARG-NKVYALCRSTKDTLKAI 60
                 6999********************.789999*9988776664 PP

>> TIGR01214  rmlD: dTDP-4-dehydrorhamnose reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.6   0.0   4.6e-05     0.012       1      33 [.      21      69 ..      21     151 .. 0.66

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 4.6e-05
    TIGR01214  1 rilitGakgqlgreLveqlskegsevvaltrs................q 33
                 +++itGa+g +g eLv+q++  g +v al rs                 
  MMETSP1137-20121227|10200_1 21 TVAITGASGGMGLELVKQFAARGNKVYALCRStkdtlkaiegditvveG 69
                 589******************9999999988856666666444444441 PP

>> TIGR01746  Thioester-redct: thioester reductase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.1   0.1   3.5e-05    0.0089       1      37 [.      21      55 ..      21      61 .. 0.89

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 3.5e-05
    TIGR01746  1 tvlLTGAtGfLGaylleeLlrrsteakviClVRakse 37
                 tv +TGA+G +G +l+++  +r    kv++l R++++
  MMETSP1137-20121227|10200_1 21 TVAITGASGGMGLELVKQFAARG--NKVYALCRSTKD 55
                 5789******************7..79******8876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (276 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       178  (0.0433935); expected 82.0 (0.02)
Passed bias filter:                      127  (0.0309605); expected 82.0 (0.02)
Passed Vit filter:                        28  (0.00682594); expected 4.1 (0.001)
Passed Fwd filter:                        16  (0.00390054); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              16  [number of targets reported over threshold]
# CPU time: 0.43u 0.19s 00:00:00.62 Elapsed: 00:00:00.68
# Mc/sec: 535.72
//
Query:       MMETSP1137-20121227|10201_1  [L=260]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (260 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       228  (0.0555826); expected 82.0 (0.02)
Passed bias filter:                      111  (0.02706); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.13s 00:00:00.36 Elapsed: 00:00:00.39
# Mc/sec: 879.93
//
Query:       MMETSP1137-20121227|10202_1  [L=172]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (172 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        29  (0.00706972); expected 82.0 (0.02)
Passed bias filter:                       27  (0.00658216); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.14s 00:00:00.30 Elapsed: 00:00:00.32
# Mc/sec: 709.44
//
Query:       MMETSP1137-20121227|10203_1  [L=92]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (92 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        66  (0.0160897); expected 82.0 (0.02)
Passed bias filter:                       37  (0.00901999); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.16s 00:00:00.31 Elapsed: 00:00:00.35
# Mc/sec: 346.94
//
Query:       MMETSP1137-20121227|10204_1  [L=487]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (487 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        62  (0.0151146); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.15s 00:00:00.47 Elapsed: 00:00:00.39
# Mc/sec: 1648.17
//
Query:       MMETSP1137-20121227|10205_1  [L=197]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      1e-05   22.3   0.0    1.3e-05   22.0   0.0    1.1  1  TIGR02160 PA_CoA_Oxy5: phenylacetate-CoA oxygenase/reductase, PaaK subunit
      0.003   14.3   0.0     0.0047   13.7   0.0    1.3  1  TIGR01941 nqrF: NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit


Domain annotation for each model (and alignments):
>> TIGR02160  PA_CoA_Oxy5: phenylacetate-CoA oxygenase/reductase, PaaK subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.0   0.0   6.3e-09   1.3e-05     108     240 ..      56     194 ..      40     197 .] 0.76

  Alignments for each domain:
  == domain 1    score: 22.0 bits;  conditional E-value: 6.3e-09
    TIGR02160 108 rakhyvavaaGsGitPilaivktvlaaepkstft...lvyanrrsasvmfaeeladlkdkypqrfallhvlsreereaellsG..rldgek..lkalldslievdevdeaflcGPaalvddaedalkalGvdsekvhlel 240
                  + +++  va G+G+tP+l ++ ++l+++  s  +   l+y+n+   +++   el+ +  k pq   ++   s e + +        ++ ++  ++ l ++l +  e  ++f cGP  + d +++ +  lG ++++vh  l
  MMETSP1137-20121227|10205_1  56 SIGQFGFVAGGTGVTPFLQMLYAMLTEKRTSLPEmklLLYGNQVD-DLLCMAELSRVAAKVPQLKLVASTTSAEMEAVSESPEawTMERGRpsVEVLAKHLPTAAEGVRVFWCGPPPFNDAVRQIVGELGFSDAQVHXIL 194
                  56777889******************9998854322368999875.666677899999999998888888888876543332201233333337778888888888999****************************865 PP

>> TIGR01941  nqrF: NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   0.0   2.3e-06    0.0047     275     397 ..      62     189 ..      46     194 .. 0.67

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 2.3e-06
    TIGR01941 275 figGGaGmaplrshildllkrlksk.rkisfw.yGarskrevfyeedfdeleaendnfkyhvalsdplpednwtGytgfihnv..lyenylkdh..dapediefymcGpplmnaaviklledlGveren 397
                  f++GG+G++p    ++ +l ++++   ++++  yG     + +   +  +++a+ + +k   + +    e   +   ++  +      + l +h   a e +  + cGpp +n av +++ +lG  + +
  MMETSP1137-20121227|10205_1  62 FVAGGTGVTPFLQMLYAMLTEKRTSlPEMKLLlYGN-QVDDLLCMAELSRVAAKVPQLKLVASTTSAEMEAVSESPEAWTMERgrPSVEVLAKHlpTAAEGVRVFWCGPPPFNDAVRQIVGELGFSDAQ 189
                  778888888888888888877765425676541554.4567777788888888888777655555555555444433333221011223343332358899***********************98766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (197 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        78  (0.0190151); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.20u 0.16s 00:00:00.36 Elapsed: 00:00:00.36
# Mc/sec: 722.27
//
Query:       MMETSP1137-20121227|10206_1  [L=61]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        48  (0.0117016); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.13s 00:00:00.25 Elapsed: 00:00:00.27
# Mc/sec: 298.20
//
Query:       MMETSP1137-20121227|10207_1  [L=1310]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        1.7    5.6  51.0        3.6    4.5  35.4    1.5  1  TIGR02794 tolA_full: protein TolA


Domain annotation for each model (and alignments):
>> TIGR02794  tolA_full: protein TolA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5  35.4   0.00089       3.6      93     250 ..     855    1001 ..     830    1048 .. 0.40

  Alignments for each domain:
  == domain 1    score: 4.5 bits;  conditional E-value: 0.00089
    TIGR02794   93 eqarqkelekqraaaekaakkaeeaakekeekkkqaeeakakqaaEakakaeaeaKaekkakeeAakkaEeeakakaaaeakkkaEa....eeakkkaeaeakKakaeaeaKakae.......eakaKaeae...AkaKAeaeAkaKaeaeakakakaeaerkaakqeaela 250 
                   e+++      +++a+++aa +ae+aa + + + +     k  +a+ a+++aea+a  ++ka  eA  +a+++ +a aaa a + a a    e                   +a a        +  a+aea+   Aka Aeae ++ a+ +++ + +a+ + +a +++ +++
  MMETSP1137-20121227|10207_1  855 EREHMNAR-MRKLAEAEAAEEAEAAAAATAPRVRIV-YGKTASAKAAAKRAEAAA--ARKALNEAVERAAAASAAAAAASAAASA-AivevE-------------------RATAValraaddALEAEAEAQlhiAKAEAEAETESEAQDTQAGASRADTRMEA-DESHAAD 1001
                   22222221.222233333333333333322222222.222222233333333333..3444444433333333233333333333.123221...................22122221111112222222232332222223222222223322333333333.2222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1310 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       341  (0.0831302); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.84u 0.15s 00:00:00.99 Elapsed: 00:00:00.72
# Mc/sec: 2401.47
//
Query:       MMETSP1137-20121227|10208_1  [L=671]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (671 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       154  (0.0375427); expected 82.0 (0.02)
Passed bias filter:                      109  (0.0265724); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.18s 00:00:00.61 Elapsed: 00:00:00.56
# Mc/sec: 1553.77
//
Query:       MMETSP1137-20121227|10209_1  [L=343]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (343 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       126  (0.0307167); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.17s 00:00:00.44 Elapsed: 00:00:00.41
# Mc/sec: 1104.20
//
Query:       MMETSP1137-20121227|10211_1  [L=118]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (118 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        71  (0.0173086); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.18s 00:00:00.34 Elapsed: 00:00:00.37
# Mc/sec: 420.94
//
Query:       MMETSP1137-20121227|10212_1  [L=369]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   3.2e-126  418.8   0.1   3.7e-126  418.6   0.1    1.0  1  TIGR01534 GAPDH-I: glyceraldehyde-3-phosphate dehydrogenase, type I
    2.5e-76  254.8   0.0    2.9e-76  254.6   0.0    1.0  1  TIGR01532 E4PD_g-proteo: erythrose-4-phosphate dehydrogenase
    0.00028   17.9   0.0    0.00044   17.3   0.0    1.3  1  TIGR01296 asd_B: aspartate-semialdehyde dehydrogenase


Domain annotation for each model (and alignments):
>> TIGR01534  GAPDH-I: glyceraldehyde-3-phosphate dehydrogenase, type I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  418.6   0.1  2.7e-129  3.7e-126       1     330 []      27     350 ..      27     350 .. 0.97

  Alignments for each domain:
  == domain 1    score: 418.6 bits;  conditional E-value: 2.7e-129
    TIGR01534   1 kvginGfGRiGrlvlrallekkskdlevvaindltdleklayllkyDsvhGrfeeevtvsekkallvngkkvivlaserdpkdlpwkelgvdlvlectGafldkekalekhleagakkVllsaPskdeaaitlVygvNeeeldeseekiiSaASCTTnclapllkvleeefgiksglmtTvHayTadQkllDavhakdlrraRaaaeniiptstgaakavakvlpelagkltgeavRvPtpdvSlvdlvlnlekevtkeevnaalkeaseg.lkgvlgysedelVSsDiigspkssivdakatkvtelkeklvkvvaWYDNElgysnrlvd 330
                  k+g+nGfGRiGr v+r++++++s   ++ +in  ++ ++++yll++D+vhGrf+++++++ + +l++ng  +++l+++rdp+++pwk++gv++v e+tGaf+++e  ++khle+gakkV++saP+kde+++t+V+gvN +++d+++ +++S+ASCTTn lapl+k+++e+fgik+glmtTvHa+Ta+Q ++D+ +++d+r +Raa+ niip+stgaakavak  p ++gkltg+a+RvPt dvS+vdl+++le+++t++e++a +k ase+  kg++gy+ed +VSsD+ig++ s+++da a ++  l+ ++vk+v+WYDNE+gys+rlvd
  MMETSP1137-20121227|10212_1  27 KLGVNGFGRIGRQVVRIAVDRES--FSLKHINSPMTPDYMKYLLEHDTVHGRFPGTCEIKGD-SLVING-AEVSLSATRDPTEIPWKKAGVEYVCESTGAFTTTEG-CSKHLESGAKKVIISAPAKDEETPTIVVGVNTDDYDPKTMNVVSCASCTTNGLAPLVKTINEKFGIKQGLMTTVHAATASQLTVDGSMKGDWRAGRAASANIIPSSTGAAKAVAKCYPVMKGKLTGMAFRVPTVDVSVVDLTCELETPTTYDEIKAEVKLASETyAKGIVGYTEDAVVSSDFIGETCSTVFDAGAGIM--LTPTFVKLVSWYDNEWGYSTRLVD 350
                  789*****************966..8899********************************9.5****9.5899999*************************7766.8****************************************************************************************************************************************************************************************************9..5568******************97 PP

>> TIGR01532  E4PD_g-proteo: erythrose-4-phosphate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  254.6   0.0   2.1e-79   2.9e-76       3     325 .]      29     350 ..      27     350 .. 0.97

  Alignments for each domain:
  == domain 1    score: 254.6 bits;  conditional E-value: 2.1e-79
    TIGR01532   3 aingfgrigrnvlralyesgkraeievvalneladaaavayllkydtshgrfakevkvdrdqlyvnddairvlreselealdwrelgvdlvldctgvygsredgerfiaagakkvlfshpgaadldativygvnqedlsaee.kivsnascttncivplikllddaigiesgtittihsamndqqvidayhn.dlrrtraasqsiipvdtklakgierllpkladrleaiavrvptvnvtaldlsvtvkkdvkanevnrvlreaaesalrgivdytelplvsvdfnhdphsaivdgtqtrvsgarlvkllvwcdnewgfanrmld 325
                   +ngfgrigr v+r       r+ +++  +n    ++ ++yll++dt hgrf++  + ++d l +n+  + +  ++++  ++w++ gv+ v + tg +++ e + +++++gakkv++s p+  +   tiv gvn +d   +  ++vs ascttn   pl+k +++ +gi++g +tt+h+a   q  +d   + d r  raas  iip +t+ ak + + +p ++++l  +a rvptv+v+ +dl+ +++ ++  +e+   ++ a+e+  +giv yte   vs df  +  s++ d     + ++ +vkl+ w+dnewg++ r++d
  MMETSP1137-20121227|10212_1  29 GVNGFGRIGRQVVRIAV---DRESFSLKHINSPMTPDYMKYLLEHDTVHGRFPGTCEIKGDSLVINGAEVSLSATRDPTEIPWKKAGVEYVCESTGAFTTTEGCSKHLESGAKKVIISAPAKDEETPTIVVGVNTDDYDPKTmNVVSCASCTTNGLAPLVKTINEKFGIKQGLMTTVHAATASQLTVDGSMKgDWRAGRAASANIIPSSTGAAKAVAKCYPVMKGKLTGMAFRVPTVDVSVVDLTCELETPTTYDEIKAEVKLASETYAKGIVGYTEDAVVSSDFIGETCSTVFDAGAGIMLTPTFVKLVSWYDNEWGYSTRLVD 350
                  69************865...57899****************************************************************************************************************99775289*******************************************98877*********************************************************************************************************************************987 PP

>> TIGR01296  asd_B: aspartate-semialdehyde dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.0   3.2e-07   0.00044      93     157 ..     143     206 ..     107     245 .. 0.85

  Alignments for each domain:
  == domain 1    score: 17.3 bits;  conditional E-value: 3.2e-07
    TIGR01296  93 safrldedvPLvvpevnaeelkeakkkgiianPnCstiqlvvvLkplkdeaklkrvvvstYqavs 157
                  sa  +de++P +v  vn+++    k+ ++++   C+t  l +++k +++++++k+ ++ t  a  
  MMETSP1137-20121227|10212_1 143 SAPAKDEETPTIVVGVNTDDYD-PKTMNVVSCASCTTNGLAPLVKTINEKFGIKQGLMTTVHAAT 206
                  56679************98765.566*****************************9999988765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (369 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       126  (0.0307167); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.30u 0.13s 00:00:00.43 Elapsed: 00:00:00.43
# Mc/sec: 1132.65
//
Query:       MMETSP1137-20121227|10214_1  [L=81]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (81 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       102  (0.0248659); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.17s 00:00:00.32 Elapsed: 00:00:00.30
# Mc/sec: 356.37
//
Query:       MMETSP1137-20121227|10215_1  [L=129]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (129 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       136  (0.0331546); expected 82.0 (0.02)
Passed bias filter:                      131  (0.0319356); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.13s 00:00:00.30 Elapsed: 00:00:00.33
# Mc/sec: 515.96
//
Query:       MMETSP1137-20121227|10216_1  [L=618]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (618 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       115  (0.0280351); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.13s 00:00:00.51 Elapsed: 00:00:00.64
# Mc/sec: 1274.52
//
Query:       MMETSP1137-20121227|10218_1  [L=219]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (219 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        73  (0.0177962); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.15s 00:00:00.36 Elapsed: 00:00:00.33
# Mc/sec: 875.93
//
Query:       MMETSP1137-20121227|10219_1  [L=241]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (241 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       219  (0.0533886); expected 82.0 (0.02)
Passed bias filter:                      159  (0.0387616); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.17s 00:00:00.39 Elapsed: 00:00:00.43
# Mc/sec: 739.75
//
Query:       MMETSP1137-20121227|10220_1  [L=124]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0035   14.7   0.0     0.0045   14.3   0.0    1.0  1  TIGR03612 RutA: pyrimidine utilization protein A
     0.0085   13.8   0.4      0.016   13.0   0.2    1.4  1  TIGR01206 lysW: lysine biosynthesis protein LysW
  ------ inclusion threshold ------
          9    4.8  12.8       0.15   10.6   3.2    2.2  2  TIGR02419 C4_traR_proteo: phage/conjugal plasmid C-4 type zinc finger protein, TraR family


Domain annotation for each model (and alignments):
>> TIGR03612  RutA: pyrimidine utilization protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.0   3.3e-06    0.0045     197     257 ..      10      70 ..       2      75 .. 0.91

  Alignments for each domain:
  == domain 1    score: 14.3 bits;  conditional E-value: 3.3e-06
    TIGR03612 197 sakyadynfvlgkgvntptafaevaerlkeaaektgrdvkslvlfmviadetdeaarakwe 257
                   a++a  + ++g g+    a+  v ++l+  a+ +g +v+ + l   +a et+ aa   we
  MMETSP1137-20121227|10220_1  10 DAEFAAPARCIGDGLAPCSALEGVCRNLECVASAAGDNVGHCHLCSSLACETHRAAANWWE 70 
                  5999************************************************999988887 PP

>> TIGR01206  lysW: lysine biosynthesis protein LysW
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   0.2   1.2e-05     0.016       5      32 ..      81     108 ..      78     112 .. 0.95

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 1.2e-05
    TIGR01206   5 cPecGAeieLeNpELgelVvceecGaEl 32 
                  cP+c Ae + +  E   +V+ce+c +E+
  MMETSP1137-20121227|10220_1  81 CPVCHAEDRKKPAEDRFIVECEDCAVEI 108
                  **************************96 PP

>> TIGR02419  C4_traR_proteo: phage/conjugal plasmid C-4 type zinc finger protein, TraR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.3      0.49   6.7e+02      34      39 ..      50      55 ..      35      68 .. 0.63
   2 ?   10.6   3.2   0.00011      0.15      27      60 ..      93     123 ..      82     124 .] 0.78

  Alignments for each domain:
  == domain 1    score: -1.2 bits;  conditional E-value: 0.49
    TIGR02419 34 vCeeCg 39
                 +C+ C 
  MMETSP1137-20121227|10220_1 50 HCHLCS 55
                 344443 PP

  == domain 2    score: 10.6 bits;  conditional E-value: 0.00011
    TIGR02419  27 veaasllvCeeCgepIPeaRrealPgvtrCveCQ 60 
                  +e     +Ce+C  +I    realP +  C+ C 
  MMETSP1137-20121227|10220_1  93 AEDRFIVECEDCAVEIG---REALPYCDWCIICK 123
                  55555789********6...9************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (124 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       116  (0.0282789); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.16u 0.16s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 584.52
//
Query:       MMETSP1137-20121227|10221_1  [L=197]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (197 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        78  (0.0190151); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.17s 00:00:00.36 Elapsed: 00:00:00.27
# Mc/sec: 963.03
//
Query:       MMETSP1137-20121227|10222_1  [L=329]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (329 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       704  (0.171624); expected 82.0 (0.02)
Passed bias filter:                      139  (0.0338859); expected 82.0 (0.02)
Passed Vit filter:                        32  (0.00780107); expected 4.1 (0.001)
Passed Fwd filter:                        13  (0.00316919); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.64u 0.18s 00:00:00.82 Elapsed: 00:00:00.74
# Mc/sec: 586.82
//
Query:       MMETSP1137-20121227|10223_1  [L=185]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (185 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        87  (0.0212092); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.17s 00:00:00.37 Elapsed: 00:00:00.37
# Mc/sec: 659.95
//
Query:       MMETSP1137-20121227|10224_1  [L=961]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (961 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       145  (0.0353486); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.56u 0.16s 00:00:00.72 Elapsed: 00:00:00.46
# Mc/sec: 2757.42
//
Query:       MMETSP1137-20121227|10225_1  [L=168]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (168 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.15s 00:00:00.32 Elapsed: 00:00:00.36
# Mc/sec: 615.95
//
Query:       MMETSP1137-20121227|10226_1  [L=893]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (893 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        67  (0.0163335); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.52u 0.16s 00:00:00.68 Elapsed: 00:00:00.83
# Mc/sec: 1420.08
//
Query:       MMETSP1137-20121227|10227_1  [L=65]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (65 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        27  (0.00658216); expected 82.0 (0.02)
Passed bias filter:                       22  (0.00536324); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.14s 00:00:00.28 Elapsed: 00:00:00.24
# Mc/sec: 357.47
//
Query:       MMETSP1137-20121227|10228_1  [L=182]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (182 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        51  (0.012433); expected 82.0 (0.02)
Passed bias filter:                       44  (0.0107265); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.15s 00:00:00.32 Elapsed: 00:00:00.35
# Mc/sec: 686.34
//
Query:       MMETSP1137-20121227|10229_1  [L=68]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (68 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        27  (0.00658216); expected 82.0 (0.02)
Passed bias filter:                       23  (0.00560702); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.17s 00:00:00.29 Elapsed: 00:00:00.30
# Mc/sec: 299.18
//
Query:       MMETSP1137-20121227|10230_1  [L=153]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (153 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       194  (0.047294); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.12s 00:00:00.30 Elapsed: 00:00:00.31
# Mc/sec: 651.43
//
Query:       MMETSP1137-20121227|10231_1  [L=527]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.4e-96  319.4   0.0    7.1e-96  319.0   0.0    1.1  1  TIGR00501 met_pdase_II: methionine aminopeptidase, type II
    2.8e-34  116.2   0.0    2.8e-34  116.2   0.0    2.3  3  TIGR00495 crvDNA_42K: DNA-binding protein, 42 kDa
    1.7e-17   61.6   0.1    3.4e-16   57.3   0.1    2.1  2  TIGR00500 met_pdase_I: methionine aminopeptidase, type I


Domain annotation for each model (and alignments):
>> TIGR00501  met_pdase_II: methionine aminopeptidase, type II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  319.0   0.0   5.2e-99   7.1e-96      10     295 .]     220     523 ..     210     523 .. 0.94

  Alignments for each domain:
  == domain 1    score: 319.0 bits;  conditional E-value: 5.2e-99
    TIGR00501  10 kaGkilkkvrreaaekivpGlkllevaefvenrirelGaeP......afPanisinevaahftpkagdetvlkdedvvkldlGahvdGyiadtaitvdlddqykellkaakdaletaikeiradvevgeiGkvieevies.........ygvkPisnLtGhslaryrlhagksipnvkerdttkleeGevlaiepfatdGvGlvtdggeveiykllae...rpvrlksarklLkkieenyktLPfakrylekledeklllalnkLvregviqdypvLkeksgslvaqfehtilveedgaevvtk 295
                   a + +++vr+ ++  +vpG  + e+ e +e+  r+l  e       afP++ s+n+vaah+tp+ gd+tvl+++dv k+d+G+hv+G i+d+a tv++d++++ l +a+++++ +++  +++dv++g+iG++ +ev+es         y vk ++nL Ghs+ +y++hagks+p+vk +++t++eeGev aie+f+++G G+v++  e+++y    +    p+rl++a++lL  i++n++tL f++r+++++++ek+llal++L  +g++q+yp+L +++gs+vaq+eht++++  ++ev++k
  MMETSP1137-20121227|10231_1 220 TAAECHRQVRKYMQSVMVPGRLMTEICEELEDLNRQLVQENglkagiAFPTGCSLNHVAAHWTPNSGDKTVLQYGDVCKVDFGTHVNGRIIDSAWTVHFDPTFDTLAEAVRESTRAGVAAAGIDVRLGDIGEACQEVMESfeveingkvYPVKSVRNLNGHSIGPYQIHAGKSVPIVKGGEATRMEEGEVYAIETFGSTGKGYVKEDLECSHYMKNFDvghIPLRLPRAKQLLSFINKNFDTLAFCRRWIDRAGEEKYLLALRNLCDNGIVQPYPPLVDIKGSYVAQYEHTLILRPTQKEVLSK 523
                  45699**************************9887775553333466**********************************************************************************************************************************************************************8765544479******************************************************************************987 PP

>> TIGR00495  crvDNA_42K: DNA-binding protein, 42 kDa
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   1.1     0.019        26     359     378 ..      46      64 ..      17      73 .. 0.64
   2 ?   -8.7   3.8         3   4.1e+03     364     377 ..     105     118 ..     102     124 .. 0.47
   3 !  116.2   0.0     2e-37   2.8e-34      21     333 ..     216     522 ..     200     526 .. 0.87

  Alignments for each domain:
  == domain 1    score: 1.1 bits;  conditional E-value: 0.019
    TIGR00495 359 spikkkknkkkakkasaate 378
                  +++k+k +kkk+kk s a +
  MMETSP1137-20121227|10231_1  46 AAAKRK-KKKKSKKKSTAEN 64 
                  334444.5666666664443 PP

  == domain 2    score: -8.7 bits;  conditional E-value: 3
    TIGR00495 364 kknkkkakkasaat 377
                  + +kk++kk +aa+
  MMETSP1137-20121227|10231_1 105 ESQKKREKKKAAAA 118
                  44555544444333 PP

  == domain 3    score: 116.2 bits;  conditional E-value: 2e-37
    TIGR00495  21 tkykiageiankvlkkvvekcksgakvvdiCekGdelikeetakvykkkkelekGiafPtavsvnnvvghfsPlksdelvlkeGdvvkidlGvhidGfialvahtivig.aeesvtGrkadviaaaslaleaalrlvkPGkkntevtevie..kvaasydcksveGvlshqlkrevidGekvvlskpsdsqkkevdkvefeenevyavdilvstgeGkakeederttiykkdedk.tyklklkasrkviseikkrfsalPftlrnled..ekrarlGlvecvehkllqpyevlydkeGeivaqfkftvlllpnGsirlt 333
                  ++ ++a+e  ++v k + +  ++g  + +iCe+ ++l ++       ++  l+ GiafPt  s n v++h++P  +d++vl+ Gdv k+d+G+h++G i   a t+    + ++++  + +   a  +a+ +  rl   G+  +ev e +e     + y +ksv  +  h +  + i   k v  ++  +       + +ee+evya++   stg+G +ke  e    y k+ d+ +  l+l  ++++ s i+k+f++l f  r ++   e++  l l ++ + +++qpy+ l d +G+ vaq++ t++l p  ++ l+
  MMETSP1137-20121227|10231_1 216 QEIRTAAECHRQVRKYMQSVMVPGRLMTEICEELEDLNRQ-----LVQENGLKAGIAFPTGCSLNHVAAHWTPNSGDKTVLQYGDVCKVDFGTHVNGRIIDSAWTVHFDpTFDTLAEAVRESTRAGVAAAGIDVRLGDIGEACQEVMESFEveINGKVYPVKSVRNLNGHSIGPYQIHAGKSVPIVKGGE------ATRMEEGEVYAIETFGSTGKGYVKEDLE-CSHYMKNFDVgHIPLRLPRAKQLLSFINKNFDTLAFCRRWIDRagEEKYLLALRNLCDNGIVQPYPPLVDIKGSYVAQYEHTLILRPTQKEVLS 522
                  4567899999999999999999*********997776443.....3445899******************************************************99978999999999***************************98763145689**************999998888876665555......67899******************98655.66788888872567***************************964478888***********************************998777665 PP

>> TIGR00500  met_pdase_I: methionine aminopeptidase, type I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.3   0.1   2.5e-19   3.4e-16      10     208 ..     216     421 ..     210     428 .. 0.85
   2 ?    2.0   0.0      0.02        27     223     246 ..     500     523 ..     496     524 .. 0.86

  Alignments for each domain:
  == domain 1    score: 57.3 bits;  conditional E-value: 2.5e-19
    TIGR00500  10 eklrkagelvaevlellerevkpGvstkeldkiakdfiekkgAksafkgykgfpgsvCiSvNevviHGipd...kkvlkdgDivniDvgveldGyygDtaktllvgkvseeaeklleatkealkkaieeikvgkrikeiskaiektaeekgfsv.........vkeytGHGiG.rklHeepeilnyakketnvrlkeGmviaiEPmvnekte 208
                  +++r a+e  ++v++++++ + pG  ++e+ +  +d  ++       k    fp     S+N v +H  p+   k+vl+ gD+ ++D+g +++G   D+a t+     +++ + l ea++e+   +++ +    r+++i++a ++ +e+    +         v+++ GH iG  ++H   +++  +k  + +r+ eG v aiE + ++++ 
  MMETSP1137-20121227|10231_1 216 QEIRTAAECHRQVRKYMQSVMVPGRLMTEICEELEDLNRQLVQENGLKAGIAFPT--GCSLNHVAAHWTPNsgdKTVLQYGDVCKVDFGTHVNGRIIDSAWTVH---FDPTFDTLAEAVRESTRAGVAAAGIDVRLGDIGEACQEVMESFEVEIngkvypvksVRNLNGHSIGpYQIHAGKSVPI-VKGGEATRMEEGEVYAIETFGSTGKG 421
                  689*********************9998888888777777777777778889996..46***********777789*************************996...6899*********************************99987654322222222339*********5589**999995.788899************99877765 PP

  == domain 2    score: 2.0 bits;  conditional E-value: 0.02
    TIGR00500 223 dkklsaqfEhtvvvtengveiLte 246
                  +++++aq+Eht+++   + e+L++
  MMETSP1137-20121227|10231_1 500 KGSYVAQYEHTLILRPTQKEVLSK 523
                  6899*********99999998875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (527 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       239  (0.0582643); expected 82.0 (0.02)
Passed bias filter:                      134  (0.032667); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.45u 0.12s 00:00:00.57 Elapsed: 00:00:01.10
# Mc/sec: 632.35
//
Query:       MMETSP1137-20121227|10232_1  [L=326]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      1e-10   38.7   3.2    1.3e-10   38.3   2.2    1.1  1  TIGR00990 3a0801s09: mitochondrial precursor proteins import receptor
      1e-06   24.8   7.2    1.5e-06   24.2   5.0    1.2  1  TIGR02917 PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein
    9.6e-06   23.2   1.4    1.9e-05   22.3   1.0    1.5  1  TIGR02552 LcrH_SycD: type III secretion low calcium response chaperone LcrH/SycD
    0.00048   17.6   0.6    0.00048   17.6   0.4    1.9  2  TIGR02521 type_IV_pilW: type IV pilus biogenesis/stability protein PilW


Domain annotation for each model (and alignments):
>> TIGR00990  3a0801s09: mitochondrial precursor proteins import receptor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.3   2.2   1.3e-13   1.3e-10      95     247 ..      64     218 ..      43     234 .. 0.79

  Alignments for each domain:
  == domain 1    score: 38.3 bits;  conditional E-value: 1.3e-13
    TIGR00990  95 apkaaavesadel.peidessvvnlseeerkkyaaklkekGnkayrnkdfdkaielyskalllkedPvyysnraacynaladlekvvedttaaleldpdyvkalnrranaydqlgkyadalldltasslid.dfrdeqsaqaverllkkfaeska 247
                  + + + v + del pe    +  +   +   + a + k +   a  + +f+ ai  y  a+ l +  + y+nra  y  l +    ++d  aal+++pd  ka + r +a+  lg++  a  dl +   id d    + ++ ve + k  ae +a
  MMETSP1137-20121227|10232_1  64 EEQDPEVVAPDELsPEQVMGDASREPTDAEMEQASEAKMAASDAVAEGNFESAITHYGTAIKLMPSALVYANRANAYLKLQKPCAAIKDCDAALAINPDSAKAYKMRGKANRMLGRWEAAAKDLGTGQNIDyDDSLYELQKLVEEKAKHVAERRA 218
                  4445555555554256666666666677777889999999999*********************************************************************************8765443133334566777777777777665 PP

>> TIGR02917  PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.2   5.0   1.5e-09   1.5e-06     109     269 ..      81     237 ..      76     238 .. 0.81

  Alignments for each domain:
  == domain 1    score: 24.2 bits;  conditional E-value: 1.5e-09
    TIGR02917 109 vldelekksslddeeaaellalrglAaLglgeleeAqksleqAlaiapksl.eaklglAqlalaenkldearalvdevLtadpknvdAllLkgdlllssgnieeAlaayrkaielkpnaiaallalatilleegefeeAekkadallkkapnspkaaylkAl 269
                  v+  +  +  +++ e+a    +++  a ++g++e A   + +A +  p++l +a+ + A+l+l+  k   a +  d++L+++p+ ++A+ ++g+  +++g  e+A++++    +++ +++ ++l     l+ee+    Ae  a+ + k ap s+ aa + ++
  MMETSP1137-20121227|10232_1  81 VMGDASREPTDAEMEQASEAKMAASDAVAEGNFESAITHYGTAIKLMPSALvYANRANAYLKLQ--KPCAAIKDCDAALAINPDSAKAYKMRGKANRMLGRWEAAAKDLGTGQNIDYDDSLYELQ---KLVEEKAKHVAERRATRAGKGAPASSTAAAATGM 237
                  554444444466666666666666666889***************9998754999999999986..67899************************************999999999888766665...5789999999999999999999999999877766 PP

>> TIGR02552  LcrH_SycD: type III secretion low calcium response chaperone LcrH/SycD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.3   1.0   1.8e-08   1.9e-05      64     133 ..     109     177 ..     100     180 .. 0.92

  Alignments for each domain:
  == domain 1    score: 22.3 bits;  conditional E-value: 1.8e-08
    TIGR02552  64 alkeyeeAiaaYalaaaldlddprpvyhaaecllalgekeeAlkaLklaieiaeekeeyselkeraeaml 133
                  a +++e Ai  Y+ a +l + ++ ++  +a+ +l+l++++ A k+ ++a++i  ++++  +++ +a+ ml
  MMETSP1137-20121227|10232_1 109 AEGNFESAITHYGTAIKLMP-SALVYANRANAYLKLQKPCAAIKDCDAALAINPDSAKAYKMRGKANRML 177
                  66899*************87.5789999***************************************998 PP

>> TIGR02521  type_IV_pilW: type IV pilus biogenesis/stability protein PilW
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.4   4.7e-07   0.00048      32      86 ..     131     185 ..     122     198 .. 0.90
   2 ?   -3.8   0.3       1.6   1.7e+03      66      90 ..     298     322 ..     291     325 .. 0.57

  Alignments for each domain:
  == domain 1    score: 17.6 bits;  conditional E-value: 4.7e-07
    TIGR02521  32 kirvqLaleYleqgdlekAkenlekAleldpkdadanlalAlyyqqlgelekAee 86 
                   ++ + a +Yl+ ++  +A ++ + Al+++p++a+a+++++ +   lg+ e+A++
  MMETSP1137-20121227|10232_1 131 LVYANRANAYLKLQKPCAAIKDCDAALAINPDSAKAYKMRGKANRMLGRWEAAAK 185
                  5778899************************************999999999976 PP

  == domain 2    score: -3.8 bits;  conditional E-value: 1.6
    TIGR02521  66 danlalAlyyqqlgelekAeesfrk 90 
                   an a A  yq+  + ++  + f++
  MMETSP1137-20121227|10232_1 298 MANPAAAAKYQNDPDMQELFQIFQQ 322
                  4555555666666666666666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (326 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       192  (0.0468064); expected 82.0 (0.02)
Passed bias filter:                      119  (0.0290102); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.31u 0.17s 00:00:00.48 Elapsed: 00:00:00.70
# Mc/sec: 614.69
//
Query:       MMETSP1137-20121227|10233_1  [L=78]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (78 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        70  (0.0170648); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.15s 00:00:00.28 Elapsed: 00:00:00.35
# Mc/sec: 294.15
//
Query:       MMETSP1137-20121227|10234_1  [L=356]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (356 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       224  (0.0546075); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.14s 00:00:00.43 Elapsed: 00:00:00.62
# Mc/sec: 757.87
//
Query:       MMETSP1137-20121227|10235_1  [L=356]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (356 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        44  (0.0107265); expected 82.0 (0.02)
Passed bias filter:                       38  (0.00926377); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.16s 00:00:00.40 Elapsed: 00:00:00.40
# Mc/sec: 1174.70
//
Query:       MMETSP1137-20121227|10236_1  [L=524]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (524 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       178  (0.0433935); expected 82.0 (0.02)
Passed bias filter:                      173  (0.0421745); expected 82.0 (0.02)
Passed Vit filter:                        27  (0.00658216); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.17s 00:00:00.57 Elapsed: 00:00:00.59
# Mc/sec: 1172.24
//
Query:       MMETSP1137-20121227|10237_1  [L=291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (291 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       192  (0.0468064); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.16s 00:00:00.39 Elapsed: 00:00:00.48
# Mc/sec: 800.18
//
Query:       MMETSP1137-20121227|10238_1  [L=285]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (285 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.11s 00:00:00.34 Elapsed: 00:00:00.81
# Mc/sec: 464.41
//
Query:       MMETSP1137-20121227|10239_1  [L=648]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
          0 1321.0  37.4          0 1320.8  25.9    1.0  1  TIGR01336 psaB: photosystem I core protein PsaB
   5.6e-179  594.7  34.3   7.7e-179  594.2  23.8    1.0  1  TIGR01335 psaA: photosystem I core protein PsaA


Domain annotation for each model (and alignments):
>> TIGR01336  psaB: photosystem I core protein PsaB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ! 1320.8  25.9         0         0       1     648 [.       2     648 .]       2     648 .] 1.00

  Alignments for each domain:
  == domain 1    score: 1320.8 bits;  conditional E-value: 0
    TIGR01336   1 atkfpkfsqdlaqdpttrriwygiatahdfeshddvteenlyqkifashfghlaiiflwtsgnlfhvawqgnfeawikdplkvrpiahaiwdphfgkaaveaftrgganypvnisysgvyhwwytiglrtnedlyagalfllvlaalsllagrlhlqpkfkpslswfknaesrlnhhlsglfgvsslawaghlihvaipasrgqyvgwnnflstlphpaglkplftgnwsvyasnpdsashvfgtsqgsgtailtllggfhpqteslwltdlahhhlaiavifiiaghmyrtnfgighsikdlleakapptsgklglghkglydtinnslhfqlglalaalgvitslvaqhlyslpayafiakdfttqaalythhqyiagflmvgafahgaiffvrdydpeqnkdnvlarllehkeaiishlswvslflgfhtlglyvhndvvvafgtpekqiliepifaqfiqaahgkvlyglnvllssssssafqaarsvwlpgwleainensnslfltigpgdflvhhaialglhttvlilvkgaldargsklmpdkkdfgysfpcdgpgrggtcdisawdafylavfwalntigwvtfywhwkhitiwqgnvsqfnesstylmgwlrdylwlnssqlingynpygmnnlsvwaw 648
                  atkfpkfsq+laqdp+trriwygiatahd+eshd+++eenlyqkifashfghlaiiflwtsgnlfhvawqgnf++w+ +plkv+piahaiwdphfg++a++aftr g+ ypvni+ sgvyhwwytig+rtn+dly gal llvl++  l+ag+lhlqpkf+p lswfkn+esrlnhhlsglfgvsslaw+ghlihvaip+srgq++gw+nf stlphp+gl p+ftgnw++ya+npd+ +h+fgt +g+gtailt+lggfhpqt+s+wltd+ahhhlaiav+fi aghmyrtn+gighs+k++l+a++pp +g+lg gh+gl++ti++slh+qlglala+lgv tslvaqh+y+lp+yaf+akd++tqaalythhqyiagflmvgafahgaiffvrdydpe nkdnvlar+l+hkeaiishlswvslflgfhtlgly+hndv vafgtpekqil ep+faqfiqa++gk++yg++vllsss+s+a+ a+ ++wlpgwleain+++nslfltigpgdflvhhaialglhtt+lilvkgaldargsklmpdkkdfgysfpcdgpgrggtcdisawdafyla+fw+lntigwvtfywh+kh+tiw gn++ fnesstylmgwlrdylwlnss+lingyn +gmn+ +vwaw
  MMETSP1137-20121227|10239_1   2 ATKFPKFSQALAQDPATRRIWYGIATAHDLESHDGMSEENLYQKIFASHFGHLAIIFLWTSGNLFHVAWQGNFQQWVLNPLKVKPIAHAIWDPHFGQSAIKAFTRAGVSYPVNIATSGVYHWWYTIGMRTNNDLYFGALGLLVLSTALLFAGWLHLQPKFRPGLSWFKNNESRLNHHLSGLFGVSSLAWSGHLIHVAIPESRGQHIGWDNFTSTLPHPDGLTPFFTGNWGLYAENPDTVKHIFGTNEGAGTAILTFLGGFHPQTQSMWLTDIAHHHLAIAVLFIFAGHMYRTNWGIGHSMKEILDAHVPP-KGRLGAGHRGLFETITDSLHMQLGLALASLGVATSLVAQHMYALPSYAFMAKDYVTQAALYTHHQYIAGFLMVGAFAHGAIFFVRDYDPEVNKDNVLARMLQHKEAIISHLSWVSLFLGFHTLGLYIHNDVCVAFGTPEKQILFEPVFAQFIQASSGKAVYGFDVLLSSSTSAATVASSKIWLPGWLEAINSGKNSLFLTIGPGDFLVHHAIALGLHTTTLILVKGALDARGSKLMPDKKDFGYSFPCDGPGRGGTCDISAWDAFYLAMFWMLNTIGWVTFYWHFKHMTIWGGNAAAFNESSTYLMGWLRDYLWLNSSPLINGYNAFGMNAQAVWAW 648
                  79******************************************************************************************************************************************************************************************************************************************************************************************************************87.9************************************************************************************************************************************************************************************************************************************************************************************************************************************************ PP

>> TIGR01335  psaA: photosystem I core protein PsaA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  594.2  23.8  3.8e-182  7.7e-179      33     664 ..       6     637 ..       2     647 .. 0.92

  Alignments for each domain:
  == domain 1    score: 594.2 bits;  conditional E-value: 3.8e-182
    TIGR01335  33 ghfsrtlakgpktttwiwnlhadahdfdshts.dledisrkifsahfgqlsliflwlsgmyfhgarfsnyeawlsdpslikpsaqvvw.pivgqeilngdvggg.frgiqi.tsglfqiwrasgitnelelyvtaigglvlaglllfagwfhyh.kaapklewfqnvesmlnhhlagllglgslswaghqihvslpinklldagvdvkeiplphefilnrellaq..lypsfaegltpfftlnwgkysdfltfrgglnpvtgglwltdiahhhlaiavlfiiaghmyrtnwgighsikeileahkgpl..tgeghkglyealttswhaqlalnlallgsltiivahhmyamppypylaidyatqlslfthhlwiggflivgaaahaaifmvrdydpsqrynnvldrvirhrdaiishlnwvciflgfhsfglyihndtmralgrsqdmfsdtaiqlqpvfaqwiqn........lhtlapgstapnalastsyvfggevvavggkvallpiklgtadflvhhihaftihvtvlillkgvlfarnsrlipdkanlgfrfpcdgpgrggtcqvsawdhvflglfwmynaisvvifhfswkmqsdvwgtvsdagvvthivggnfaqsaitingwlrdflwaqasqviqsygs 664
                   +fs++la+ p t   iw   a ahd++sh   + e++ +kif++hfg+l++iflw sg +fh a   n++ w+ +p+++kp a+ +w p  gq  +++    g +  ++i tsg+++ w + g+ ++ +ly  a+g lvl++ llfagw+h + k  p l+wf+n es lnhhl+gl+g+ sl+w+gh+ihv++p  +  + g d  +  lph   l   +  +  ly    + +  +f  n g+ + +ltf gg++p t ++wltdiahhhlaiavlfi aghmyrtnwgighs+keil+ah  p    g gh+gl+e++t s h ql l la lg  t +va+hmya+p y ++a dy tq +l+thh +i gfl+vga ah+aif+vrdydp ++++nvl r+++h++aiishl wv +flgfh++glyihnd   a+g ++       i ++pvfaq+iq+          +l  +st+ +++as+ + + g + a+++    l +++g  dflvhh  a+ +h t lil+kg l ar s+l+pdk ++g+ fpcdgpgrggtc++sawd  +l +fwm n+i  v f++ +k    +wg               f +s+  + gwlrd+lw ++s +i+ y +
  MMETSP1137-20121227|10239_1   6 PKFSQALAQDPAT-RRIWYGIATAHDLESHDGmSEENLYQKIFASHFGHLAIIFLWTSGNLFHVAWQGNFQQWVLNPLKVKPIAHAIWdPHFGQSAIKAFTRAGvSYPVNIaTSGVYHWWYTIGMRTNNDLYFGALGLLVLSTALLFAGWLHLQpKFRPGLSWFKNNESRLNHHLSGLFGVSSLAWSGHLIHVAIPESRGQHIGWDNFTSTLPHPDGLTPFFTGNwgLYAENPDTVKHIFGTNEGAGTAILTFLGGFHPQTQSMWLTDIAHHHLAIAVLFIFAGHMYRTNWGIGHSMKEILDAHVPPKgrLGAGHRGLFETITDSLHMQLGLALASLGVATSLVAQHMYALPSYAFMAKDYVTQAALYTHHQYIAGFLMVGAFAHGAIFFVRDYDPEVNKDNVLARMLQHKEAIISHLSWVSLFLGFHTLGLYIHNDVCVAFGTPEK-----QILFEPVFAQFIQAssgkavygFDVLLSSSTSAATVASSKIWLPGWLEAINSGKNSLFLTIGPGDFLVHHAIALGLHTTTLILVKGALDARGSKLMPDKKDFGYSFPCDGPGRGGTCDISAWDAFYLAMFWMLNTIGWVTFYWHFKH-MTIWGGNA----------AAFNESSTYLMGWLRDYLWLNSSPLINGYNA 637
                  579********76.679*************86256789**************************************************889****999876555156777758***************************************874889********************************************************9988877665444999999***********************************************************************98862259***********************************************************************************************************************************9964.....688999999999972222211134566788888888888888899999*999889999***********************************************************************************999996.469*9743..........46999**********************9964 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (648 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       103  (0.0251097); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.13s 00:00:00.60 Elapsed: 00:00:00.71
# Mc/sec: 1204.63
//
Query:       MMETSP1137-20121227|10240_1  [L=62]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (62 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        33  (0.00804486); expected 82.0 (0.02)
Passed bias filter:                       33  (0.00804486); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.16s 00:00:00.27 Elapsed: 00:00:00.28
# Mc/sec: 292.26
//
Query:       MMETSP1137-20121227|10240_2  [L=62]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (62 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        68  (0.0165773); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.14s 00:00:00.27 Elapsed: 00:00:00.26
# Mc/sec: 314.74
//
Query:       MMETSP1137-20121227|10242_1  [L=343]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (343 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       431  (0.105071); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.12s 00:00:00.41 Elapsed: 00:00:00.59
# Mc/sec: 767.33
//
Query:       MMETSP1137-20121227|10243_1  [L=339]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (339 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        63  (0.0153584); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.14s 00:00:00.39 Elapsed: 00:00:00.43
# Mc/sec: 1040.57
//
Query:       MMETSP1137-20121227|10244_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       164  (0.0399805); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.15s 00:00:00.26 Elapsed: 00:00:00.39
# Mc/sec: 175.99
//
Query:       MMETSP1137-20121227|10246_1  [L=211]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (211 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        97  (0.023647); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.14s 00:00:00.33 Elapsed: 00:00:00.47
# Mc/sec: 592.55
//
Query:       MMETSP1137-20121227|10247_1  [L=530]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (530 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        88  (0.0214529); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.17s 00:00:00.53 Elapsed: 00:00:00.55
# Mc/sec: 1271.89
//
Query:       MMETSP1137-20121227|10248_1  [L=69]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (69 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        31  (0.00755729); expected 82.0 (0.02)
Passed bias filter:                       29  (0.00706972); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:00.31
# Mc/sec: 293.78
//
Query:       MMETSP1137-20121227|10249_1  [L=470]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (470 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        57  (0.0138957); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.15s 00:00:00.47 Elapsed: 00:00:00.41
# Mc/sec: 1513.05
//
Query:       MMETSP1137-20121227|10250_1  [L=559]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (559 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        92  (0.0224281); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.13s 00:00:00.49 Elapsed: 00:00:00.49
# Mc/sec: 1505.75
//
Query:       MMETSP1137-20121227|10252_1  [L=124]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (124 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        98  (0.0238908); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.15s 00:00:00.31 Elapsed: 00:00:00.28
# Mc/sec: 564.37
//
Query:       MMETSP1137-20121227|10253_1  [L=384]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (384 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        95  (0.0231594); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.14s 00:00:00.44 Elapsed: 00:00:00.45
# Mc/sec: 1126.31
//
Query:       MMETSP1137-20121227|10254_1  [L=313]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.4e-73  243.6  16.8      9e-73  243.3  11.6    1.1  1  TIGR00836 amt: ammonium transporter
    1.3e-44  150.4  14.5      3e-43  145.9  10.1    2.1  1  TIGR03644 marine_trans_1: probable ammonium transporter, marine subtype


Domain annotation for each model (and alignments):
>> TIGR00836  amt: ammonium transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  243.3  11.6   4.4e-76     9e-73     134     406 .]       1     291 [.       1     291 [. 0.92

  Alignments for each domain:
  == domain 1    score: 243.3 bits;  conditional E-value: 4.4e-76
    TIGR00836 134 vyppvahwvwgtgGwlal.........klgvlDFAGstvVHlvgGvagLvaalvlGpRigrf.....eseaikphnvplvvlGtflLwfGWfgFNaGSal..aang.laalaavnTtlaaaagaltallieylk......egkptvlgaingilaglvaitagagvvepwaalviGvvagvlvllavsklkkklkiDDpldvfavHgvaGiwGlilvglfaaekvvasagtagss....llggnakqllvqligilvilvysfvvtliillilkkvigLRvseeeEklGlDlaehgesay 406
                  +yp+v hwvw+  G+l++          +g++DFAGs+vVH++gG+a++v+a +lGpR+grf      +  +++h+++l+vlGtf+Lw+GW+gFN GS+l    ng +aa++ v+Ttla+ ++a + l i+++       +  +++ +++n +laglv++tag+++v + +         ++ + + s l++kl+iDDpld+favHgv+G+wG+i+vglf +e++ + + ++g++    ++gg +++l+ ql+g+++ +++++ + l+++l l+++++ Rv  e E++GlD+++hg say
  MMETSP1137-20121227|10254_1   1 IYPVVVHWVWDSAGFLSAnnsninerwGTGMIDFAGSGVVHMTGGMAAIVGAKILGPRRGRFapdgtAQPGFTGHSLALTVLGTFVLWIGWYGFNQGSTLklIGNGkTAARVGVTTTLAGGMAACVGLYIKRMLppalggTHVWDLGHTCNSLLAGLVGVTAGCATVGICS---------AFFYHGGSCLMRKLRIDDPLDAFAVHGVNGLWGVIAVGLFTKEEYSYVVDDDGNTaygcFTGGDGALLGTQLAGACIEITWVVSLSLVLFLGLHFTGMFRVPVEMEEAGLDVSKHGGSAY 291
                  7**********999999888999998899***********************************9988899*****************************7755557***********************9986333322458**********************986555.........5567777789************************************999888877999999*********************************************************99 PP

>> TIGR03644  marine_trans_1: probable ammonium transporter, marine subtype
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  145.9  10.1   1.5e-46     3e-43     141     403 ..       1     293 [.       1     294 [. 0.83

  Alignments for each domain:
  == domain 1    score: 145.9 bits;  conditional E-value: 1.5e-46
    TIGR03644 141 iyPvegswkwgg.Gll........se..lgfsdfaGsgivhlaGaaaalagvlllGarkGkygkdgevka.ipgsnlplatlGtfilwlGwfGfnGgsqlal.sdvedanavak.ifvntnaaaaaGaiaalllakllf..gkadltmvlnGalaGlvaitaePlaPsllaatliGavgGvlvvlsivlldklkiddpvGaisvhgvaGifGllvvpltn......................adasfvaqligvvaifvfvfvaslivwailkavlGirvseeeeleGldlaelGleaype 403
                  iyPv  +w w + G+l        ++  +g+ dfaGsg+vh++G++aa+ g+ +lG+r G++++dg+ ++ ++g +l+l+ lGtf+lw+Gw+Gfn gs l+l ++ + a+ v+    +   +aa+ G+    +l   l   +  dl  + n  laGlv +ta   +    +a +           +  l+ kl+iddp+ a +vhgv G++G+++v l +                      ++a + +ql+g+++ +++v+  sl+++  l+++   rv  e e  Gld+++ G +aype
  MMETSP1137-20121227|10254_1   1 IYPVVVHWVWDSaGFLsannsninERwgTGMIDFAGSGVVHMTGGMAAIVGAKILGPRRGRFAPDGTAQPgFTGHSLALTVLGTFVLWIGWYGFNQGSTLKLiGNGKTAARVGVtTTLAGGMAACVGLYIKRMLPPALGgtHVWDLGHTCNSLLAGLVGVTAGCATVGICSAFF--------YHGGSCLMRKLRIDDPLDAFAVHGVNGLWGVIAVGLFTkeeysyvvdddgntaygcftggDGALLGTQLAGACIEITWVVSLSLVLFLGLHFTGMFRVPVEMEEAGLDVSKHGGSAYPE 293
                  9*********9779986655433322335899***********************************997699***************************96245555555543133455677777765555555555411446******************987766555544........444456899*************************87666899999999999999999998889999***************************99***********************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (313 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       123  (0.0299854); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.27u 0.14s 00:00:00.41 Elapsed: 00:00:00.45
# Mc/sec: 918.06
//
Query:       MMETSP1137-20121227|10257_1  [L=82]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (82 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        48  (0.0117016); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.18s 00:00:00.32 Elapsed: 00:00:00.27
# Mc/sec: 400.86
//
Query:       MMETSP1137-20121227|10258_1  [L=220]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (220 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        60  (0.014627); expected 82.0 (0.02)
Passed bias filter:                       41  (0.00999512); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.11s 00:00:00.33 Elapsed: 00:00:00.33
# Mc/sec: 879.93
//
Query:       MMETSP1137-20121227|10259_1  [L=212]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (212 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       124  (0.0302292); expected 82.0 (0.02)
Passed bias filter:                      110  (0.0268162); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.16s 00:00:00.37 Elapsed: 00:00:00.37
# Mc/sec: 756.26
//
Query:       MMETSP1137-20121227|10260_1  [L=199]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (199 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        86  (0.0209654); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.15s 00:00:00.36 Elapsed: 00:00:00.86
# Mc/sec: 305.42
//
Query:       MMETSP1137-20121227|10261_1  [L=186]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.3e-17   60.7   2.1    3.5e-17   60.1   1.5    1.2  1  TIGR03635 S17_bact: 30S ribosomal protein S17
      1e-08   32.9   0.9    1.5e-08   32.4   0.7    1.2  1  TIGR03630 arch_S17P: archaeal ribosomal protein S17P


Domain annotation for each model (and alignments):
>> TIGR03635  S17_bact: 30S ribosomal protein S17
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.1   1.5   1.7e-20   3.5e-17       4      71 ..      18      85 ..      16      86 .. 0.97

  Alignments for each domain:
  == domain 1    score: 60.1 bits;  conditional E-value: 1.7e-20
    TIGR03635  4 lvGvVvsdkmdktvvVkverkvkhplYkKivkrtkkykaHDeeneakvGDvVeieetrPlSktKrwrl 71
                 +vG+Vvs++mdktv V++  k+++p+   +++r++k+ +HDe   ++ GD+Ve++ +r lSk+K++ l
  MMETSP1137-20121227|10261_1 18 MVGHVVSARMDKTVKVHIPYKYRDPKTMVYLRRRTKIFVHDEYSLCSPGDLVEVQKSRKLSKRKAHVL 85
                 79**************************************************************9977 PP

>> TIGR03630  arch_S17P: archaeal ribosomal protein S17P
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.4   0.7   7.5e-12   1.5e-08      30      98 ..      18      85 ..      15      89 .. 0.93

  Alignments for each domain:
  == domain 1    score: 32.4 bits;  conditional E-value: 7.5e-12
    TIGR03630 30 legkvvkkkmektvvvereylkyvkkyeryekrrskihahlPeCievkeGdkvliaetrplsktisfvv 98
                 + g+vv+++m+ktv v+  y + ++k   y +rr+ki +h    +   +Gd v +  +r+lsk +++v+
  MMETSP1137-20121227|10261_1 18 MVGHVVSARMDKTVKVHIPYKYRDPKTMVYLRRRTKIFVHDEYSL-CSPGDLVEVQKSRKLSKRKAHVL 85
                 6799************************************98877.68*****************9996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (186 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.17u 0.17s 00:00:00.34 Elapsed: 00:00:00.33
# Mc/sec: 743.94
//
Query:       MMETSP1137-20121227|10262_1  [L=114]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (114 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        45  (0.0109703); expected 82.0 (0.02)
Passed bias filter:                       41  (0.00999512); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.36
# Mc/sec: 417.97
//
Query:       MMETSP1137-20121227|10263_1  [L=114]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (114 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       101  (0.0246221); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.16s 00:00:00.32 Elapsed: 00:00:00.41
# Mc/sec: 366.99
//
Query:       MMETSP1137-20121227|10264_1  [L=300]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (300 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       107  (0.0260848); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.15s 00:00:00.37 Elapsed: 00:00:00.38
# Mc/sec: 1042.02
//
Query:       MMETSP1137-20121227|10265_1  [L=343]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0017   14.4   0.0     0.0021   14.1   0.0    1.1  1  TIGR04075 bacter_Pnkp: polynucleotide kinase-phosphatase
  ------ inclusion threshold ------
      0.028   11.7   0.0      0.048   10.9   0.0    1.3  1  TIGR00668 apaH: bis(5'-nucleosyl)-tetraphosphatase (symmetrical)


Domain annotation for each model (and alignments):
>> TIGR04075  bacter_Pnkp: polynucleotide kinase-phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.0     1e-06    0.0021     218     328 ..     103     215 ..      62     227 .. 0.60

  Alignments for each domain:
  == domain 1    score: 14.1 bits;  conditional E-value: 1e-06
    TIGR04075 218 thpegrkavflGdlvdrGpdspdvlrlvmsmvkagaa.....lcvpGnhee.kllrklrGrkvklthGlaetleqlaaeseefree..vkefldglvshyvlddGklvvahaGlkeeyq 328
                  + p+   +v  Gdl+drG+d+  v+ l++++ +  aa     + + Gnhe   ll  lr     ++     +     a++ +f+++  v ++l  + + +    Gk v  haGl+ +y 
  MMETSP1137-20121227|10265_1 103 HAPARTVLVQTGDLIDRGDDTQTVFALMQQLERDAAAagsrvVRLLGNHELmNLLGDLR----YVSSADTASYGGTHARQAAFAQDgsVGQWL--MKANICAIVGKTVFVHAGLHPKYA 215
                  34555556889***************998876655541211134579999413443333....333334444455555555555431144454..334445555777777777777665 PP

>> TIGR00668  apaH: bis(5'-nucleosyl)-tetraphosphatase (symmetrical)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   2.4e-05     0.048      26      73 ..     104     159 ..      92     222 .. 0.63

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 2.4e-05
    TIGR00668  26 dpakdtlyltgdlvargdkslevlryvksl.......gdavrlvlgnhdlh.llav 73 
                   pa+  l  tgdl+ rgd++  v+ +++ l       g  v  +lgnh+l  ll  
  MMETSP1137-20121227|10265_1 104 APARTVLVQTGDLIDRGDDTQTVFALMQQLerdaaaaGSRVVRLLGNHELMnLLGD 159
                  699999***************999999887333222244455679***97414443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (343 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        67  (0.0163335); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.26u 0.15s 00:00:00.41 Elapsed: 00:00:00.79
# Mc/sec: 573.07
//
Query:       MMETSP1137-20121227|10266_1  [L=230]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (230 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        66  (0.0160897); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.16s 00:00:00.38 Elapsed: 00:00:00.31
# Mc/sec: 979.27
//
Query:       MMETSP1137-20121227|10267_1  [L=448]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (448 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        57  (0.0138957); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.13s 00:00:00.43 Elapsed: 00:00:00.44
# Mc/sec: 1343.89
//
Query:       MMETSP1137-20121227|10268_1  [L=276]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.5e-17   60.1   0.0    2.6e-09   34.7   0.0    2.1  2  TIGR02427 protocat_pcaD: 3-oxoadipate enol-lactonase
    1.8e-12   45.3   0.0    3.1e-12   44.5   0.0    1.4  1  TIGR01738 bioH: putative pimeloyl-BioC--CoA transferase BioH
    1.8e-12   44.7   0.0    8.3e-10   36.0   0.0    2.1  2  TIGR03056 bchO_mg_che_rel: putative magnesium chelatase accessory protein
    1.2e-09   35.8   0.0      3e-06   24.7   0.0    2.1  2  TIGR03695 menH_SHCHC: 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase
    5.9e-07   26.9   0.0    1.4e-06   25.7   0.0    1.5  2  TIGR03611 RutD: pyrimidine utilization protein D
    2.4e-06   25.2   0.0     0.0014   16.1   0.0    2.1  2  TIGR01250 pro_imino_pep_2: proline-specific peptidases
    6.1e-06   23.5   0.0    2.3e-05   21.6   0.0    1.8  1  TIGR03343 biphenyl_bphD: 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase


Domain annotation for each model (and alignments):
>> TIGR02427  protocat_pcaD: 3-oxoadipate enol-lactonase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.7   0.0   4.4e-12   2.6e-09       1      92 [.      12     101 ..      12     132 .. 0.94
   2 !   23.7   0.0   9.9e-09   5.8e-06     181     249 ..     200     268 ..     173     270 .. 0.92

  Alignments for each domain:
  == domain 1    score: 34.7 bits;  conditional E-value: 4.4e-12
    TIGR02427   1 rlhyrlegaeadkpvlvlinSLGtdlrlwdkvlealtkdfrvlryDkrGHGlSdvpegpysiedladdvlallDalgiekaavcGlSlGGli 92 
                  rlhy  +g++   p +vl+     + r +d  leal++  rv + D r HG Sd p   + ++ la d+  ll a g+++ +v+G SlG ++
  MMETSP1137-20121227|10268_1  12 RLHYVQQGQD--GPSVVLLHGWSGSHRCFDLNLEALAQSCRVYAPDFRFHGDSDKPGWGFHVARLAMDLHDLLIAWGLDRPTVVGCSLGSAV 101
                  6999999988..8999999999999****************************************************************876 PP

  == domain 2    score: 23.7 bits;  conditional E-value: 9.9e-09
    TIGR02427 181 rdadlrerleeiavPtlviaGdeDgstPpelvreiadlvpgarfaeieeaaHlpnleqpeafaallrdf 249
                  ++ d r  l ++  P l + G++ g  P e   ++ +lvp  + +e++++ H   +e+p+ f++l++df
  MMETSP1137-20121227|10268_1 200 ATKDWRPILPRVVCPSLNLYGTHSGCFPVEGCAKVGELVPSCKSVEFNGCNHWLYMEEPARFNKLVADF 268
                  56788889999********************************************************99 PP

>> TIGR01738  bioH: putative pimeloyl-BioC--CoA transferase BioH
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.5   0.0   5.3e-15   3.1e-12       3     244 ..      21     268 ..      19     269 .. 0.80

  Alignments for each domain:
  == domain 1    score: 44.5 bits;  conditional E-value: 5.3e-15
    TIGR01738   3 gvkklvLihGWglnaevfadlveeLsahftlslvDL........PGyGdsaelralslaevaeailaqapakaiwlGWsLGGLva.lhlalthpdkvrsLvlvasspkfaaredwpegieadvltkfaeqlksdyqktierflaLqt...lgsesarqdvralkqallarptPnvqaLqagLellaevDlRralqkisvPvLrlyGqkDalvPakvvealdklapqsellvlekaahaPflshaeafaallref 244
                    +++vL+hGW+     f+   e+L +  ++++ D         PG+G +    a++l+++    +a   ++  ++G sLG  v   ++ l  +  + + v v  +p   +  dw+   +    ++  e+++s     +e f   ++   l  + + + +++lk + l++   n++ L + +   a+ D R  l ++  P+L lyG++ +  P +   ++ +l+p  +++ +++  h  ++ ++++f +l+ +f
  MMETSP1137-20121227|10268_1  21 DGPSVVLLHGWSGSHRCFDLNLEALAQSCRVYAPDFrfhgdsdkPGWGFHVARLAMDLHDLL---IAWGLDRPTVVGCSLGSAVIwCFVELFGTTMIGKCVFVDQAPSQWRMPDWKFCSKGIYDAASLEAINSALHGSMETFADGNAeccLSKPVSAELLGTLKAETLKC---NPDHLSKLMADHATKDWRPILPRVVCPSLNLYGTHSGCFPVEGCAKVGELVPSCKSVEFNGCNHWLYMEEPARFNKLVADF 268
                  4489****************************988722222222444444444555555544...3333344669******97762567788889999******************555555556778999999999999998665422378888888889999888887...4589999999999***************************************************************99998 PP

>> TIGR03056  bchO_mg_che_rel: putative magnesium chelatase accessory protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.0   0.0   1.4e-12   8.3e-10      15     113 ..      10     106 ..       2     118 .. 0.91
   2 !    6.8   0.0    0.0011      0.64     202     277 ..     194     269 ..     177     270 .. 0.89

  Alignments for each domain:
  == domain 1    score: 36.0 bits;  conditional E-value: 1.4e-12
    TIGR03056  15 pfdWlvrdeGpaaGPvllllhGagasshsfrklvpllaarfrvvapdlPGhGftratarfrfslkamaedlakllaaedlsPdaviGhsaGaaialrla 113
                  ++  +  ++G+ +GP ++llhG ++s   f   + +la++ rv apd+  hG +  +    f +  +a dl  ll a +l   +v+G s G+a++  ++
  MMETSP1137-20121227|10268_1  10 GIRLHYVQQGQ-DGPSVVLLHGWSGSHRCFDLNLEALAQSCRVYAPDFRFHGDSDKPGW-GFHVARLAMDLHDLLIAWGLDRPTVVGCSLGSAVIWCFV 106
                  56667778898.*******************99********************998876.9********************************987665 PP

  == domain 2    score: 6.8 bits;  conditional E-value: 0.0011
    TIGR03056 202 smmaqWelaplqralpriavPvlliageedkavppdvskeaatrlplatlrevpGlGhlvheedadgvaglildav 277
                  ++ma+   +  +  lpr+  P l + g + ++ p + ++++ + +p +  +e +G  h ++ e+++    l+ d++
  MMETSP1137-20121227|10268_1 194 KLMADHATKDWRPILPRVVCPSLNLYGTHSGCFPVEGCAKVGELVPSCKSVEFNGCNHWLYMEEPARFNKLVADFA 269
                  57888888888999****************************************************9999999886 PP

>> TIGR03695  menH_SHCHC: 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.7   0.0     5e-09     3e-06       3      84 ..      23     101 ..      21     116 .. 0.88
   2 !    9.3   0.0   0.00025      0.15     186     250 ..     203     268 ..     170     270 .. 0.76

  Alignments for each domain:
  == domain 1    score: 24.7 bits;  conditional E-value: 5e-09
    TIGR03695   3 pvlvlLHGflgskedwqalieeleekfsvlalDLpgHGkskslkekeakdfeeaaqellkelleklkiekviLvGYSlGGRi 84 
                  p +vlLHG  gs++ ++   e+l+++++v a D  +HG+s+++      ++++ a + l++ll + + ++ ++vG SlG  +
  MMETSP1137-20121227|10268_1  23 PSVVLLHGWSGSHRCFDLNLEALAQSCRVYAPDFRFHGDSDKP--GWGFHVARLAMD-LHDLLIAWGLDRPTVVGCSLGSAV 101
                  789**************************************99..455666777888.78888888************9866 PP

  == domain 2    score: 9.3 bits;  conditional E-value: 0.00025
    TIGR03695 186 slweklkelklpvlylvGekDekF.kkiakemqkllpalklevieeaGHnihlenpeafakileef 250
                  ++++ l ++ +p l l G +   F ++   ++ +l+p++k + ++ + H +++e+p++f+k +  f
  MMETSP1137-20121227|10268_1 203 DWRPILPRVVCPSLNLYGTHSGCFpVEGCAKVGELVPSCKSVEFNGCNHWLYMEEPARFNKLVADF 268
                  55666666666666677776666633445678889**************************99987 PP

>> TIGR03611  RutD: pyrimidine utilization protein D
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.7   0.0   2.4e-09   1.4e-06       8      93 ..      17     101 ..      12     122 .. 0.90
   2 ?   -2.6   0.0         1   6.1e+02     222     254 ..     236     268 ..     226     271 .. 0.72

  Alignments for each domain:
  == domain 1    score: 25.7 bits;  conditional E-value: 2.4e-09
    TIGR03611   8 ksdadaevvvlssGLGGsgsywapqlevleqefrvvvyDhrGtgrspeelaedysiaalaadvlelldaldiekahvvGhalGgli 93 
                  ++ +d++ vvl  G  Gs + +  +le+l+q+ rv   D r  g s +    ++ +a+la+d+++ll a ++++  vvG +lG+ +
  MMETSP1137-20121227|10268_1  17 QQGQDGPSVVLLHGWSGSHRCFDLNLEALAQSCRVYAPDFRFHGDSDK-PGWGFHVARLAMDLHDLLIAWGLDRPTVVGCSLGSAV 101
                  456799***********************************9887765.5789******************************876 PP

  == domain 2    score: -2.6 bits;  conditional E-value: 1
    TIGR03611 222 ekLPdaelklleyGghasnvtdpetfnellldf 254
                  e +P ++ +  +   h   + +p  fn+l+ df
  MMETSP1137-20121227|10268_1 236 ELVPSCKSVEFNGCNHWLYMEEPARFNKLVADF 268
                  556666666666677888899999999999888 PP

>> TIGR01250  pro_imino_pep_2: proline-specific peptidases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.3   0.0    0.0011      0.65       6      71 ..       5      67 ..       1     109 [. 0.66
   2 !   16.1   0.0   2.4e-06    0.0014     227     286 ..     208     268 ..     194     270 .. 0.89

  Alignments for each domain:
  == domain 1    score: 7.3 bits;  conditional E-value: 0.0011
    TIGR01250  6 iitldggyvlftkvkeegekikllvlHGGPgssheyleslkellkegvevilYDQLGsgkSdqPdd 71
                 i++ dg++  + + +++  +  +++lHG  gs      +l++l++   +v+  D    g Sd+P  
  MMETSP1137-20121227|10268_1  5 ITANDGIRLHYVQQGQD--GPSVVLLHGWSGSHRCFDLNLEALAQS-CRVYAPDFRFHGDSDKPGW 67
                 44555666666555544..699*****9988655555688888887.9999999888889998854 PP

  == domain 2    score: 16.1 bits;  conditional E-value: 2.4e-06
    TIGR01250 227 lkeIkvPtLltvgefdem.tpeaaremqekiaksrlvvfedgshltmieepeeylkllkdf 286
                  l  + +P+L   g++  + ++e   ++ e +++ + v f+ + h  ++eep++++kl++df
  MMETSP1137-20121227|10268_1 208 LPRVVCPSLNLYGTHSGCfPVEGCAKVGELVPSCKSVEFNGCNHWLYMEEPARFNKLVADF 268
                  67889*********998846688999**********************************9 PP

>> TIGR03343  biphenyl_bphD: 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.6   0.0   3.9e-08   2.3e-05      20     281 ..      11     270 ..       2     271 .. 0.78

  Alignments for each domain:
  == domain 1    score: 21.6 bits;  conditional E-value: 3.9e-08
    TIGR03343  20 frihyneage.geavimlhgggpgaggwsnyyrniealvdagyrvilkdapgfnksdevvmdeqrglvnar...avkglmdaldiekahlvgnsmggatalnfaleyp.drlgklilmgpgg....lgksllaampmegikllfklya..epsletlkemlnvflfdqsliteellqgrweniqrrpehlknfllsskkaplsawdvvdrlgeikaktlvtwgrddrfvpldhglklvanlpdaqlhvfsrcghwaqwehadafnrlvidflr 281
                  +r+hy + g+ g +v++lhg     g    +  n+eal+++  rv   d      sd+       g+  ar    ++ l+ a ++++  +vg s+g a    f   +    +gk +++  +     + +  + ++ + +   l  + +  + s+et+++        + + +e l   + e+++ +p+hl ++++       ++ d  + l ++   +l  +g      p++   k+   +p ++   f+ c hw   e    fn+lv df +
  MMETSP1137-20121227|10268_1  11 IRLHYVQQGQdGPSVVLLHGWS---GSHRCFDLNLEALAQS-CRVYAPDFRFHGDSDKPGW----GFHVARlamDLHDLLIAWGLDRPTVVGCSLGSAVIWCFVELFGtTMIGKCVFVDQAPsqwrMPDWKFCSKGIYDAASLEAINSalHGSMETFADGNAECCLSKPVSAELLGTLKAETLKCNPDHLSKLMADH-----ATKDWRPILPRVVCPSLNLYGTHSGCFPVEGCAKVGELVPSCKSVEFNGCNHWLYMEEPARFNKLVADFAK 270
                  699*999886489999999864...4566778899999986.6998888877778887554....5555551004566666779******************99877615789*999876541122455556666665555555554422578999999988888888888888889999**********9987654.....456677889999999******************************************************75 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (276 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        44  (0.0107265); expected 82.0 (0.02)
Passed bias filter:                       42  (0.0102389); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.29u 0.18s 00:00:00.47 Elapsed: 00:00:00.45
# Mc/sec: 809.53
//
Query:       MMETSP1137-20121227|10269_1  [L=915]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (915 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       133  (0.0324232); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.55u 0.16s 00:00:00.71 Elapsed: 00:00:00.53
# Mc/sec: 2278.68
//
Query:       MMETSP1137-20121227|10270_1  [L=305]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0032   15.4   2.8     0.0053   14.7   1.9    1.3  1  TIGR02499 HrpE_YscL_not: type III secretion apparatus protein, HrpE/YscL family
  ------ inclusion threshold ------
      0.023   12.8   6.0      0.034   12.3   4.1    1.2  1  TIGR02926 AhaH: ATP synthase archaeal, H subunit
       0.84    7.4   5.2        1.1    6.9   2.9    1.6  2  TIGR01144 ATP_synt_b: ATP synthase F0, B subunit


Domain annotation for each model (and alignments):
>> TIGR02499  HrpE_YscL_not: type III secretion apparatus protein, HrpE/YscL family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   1.9   3.9e-06    0.0053      17      69 ..      87     139 ..      73     155 .. 0.74

  Alignments for each domain:
  == domain 1    score: 14.7 bits;  conditional E-value: 3.9e-06
    TIGR02499  17 ailaaArqkaekliadaeeeaeasrqegyeqgleqawqeaaaqlvewlqeaeq 69 
                  + l++A+++ae+l+ da++eae+   ++ ++ +++a  + aa +++ ++++++
  MMETSP1137-20121227|10270_1  87 EALEDAKEHAEQLVNDAADEAEELLGDASQEVAATAAVDGAAATAAIATQEAD 139
                  67999*****************9666666665555555555555555555544 PP

>> TIGR02926  AhaH: ATP synthase archaeal, H subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   4.1   2.5e-05     0.034       4      44 ..      74     118 ..      71     144 .. 0.76

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 2.5e-05
    TIGR02926   4 ikkAEek....aeelieeAkeerkqriaeAreeAkelleeaeeeA 44 
                  i  AEe+     +e+ e+Ake+++q++++A  eA+ell +a +e 
  MMETSP1137-20121227|10270_1  74 IMSAEESpkfnPDEALEDAKEHAEQLVNDAADEAEELLGDASQEV 118
                  6666665222247999**********************9998873 PP

>> TIGR01144  ATP_synt_b: ATP synthase F0, B subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   2.9   0.00083       1.1      54     101 ..      87     134 ..      74     143 .. 0.66
   2 ?   -0.8   0.1      0.21   2.8e+02      35      65 ..     133     163 ..     127     168 .. 0.82

  Alignments for each domain:
  == domain 1    score: 6.9 bits;  conditional E-value: 0.00083
    TIGR01144  54 ellkeakeeaaeiienAnkrkseikeeikkeAeeerekilakaeaeie 101
                  e l++ake+a++++++A   ++e++ ++ +e  + ++   a+a a i+
  MMETSP1137-20121227|10270_1  87 EALEDAKEHAEQLVNDAADEAEELLGDASQEVAATAAVDGAAATAAIA 134
                  567777777777777777777777777777766655555555555555 PP

  == domain 2    score: -0.8 bits;  conditional E-value: 0.21
    TIGR01144  35 lasaekakkelalaqkkaqellkeakeeaae 65 
                  +a  e++  e++ +  k++  l++ k++aa 
  MMETSP1137-20121227|10270_1 133 IATQEADVGEQKGIMGKMRGFLRKNKAKAAG 163
                  677788888999999999******9999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (305 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       226  (0.0550951); expected 82.0 (0.02)
Passed bias filter:                      122  (0.0297416); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.25u 0.17s 00:00:00.42 Elapsed: 00:00:00.42
# Mc/sec: 958.49
//
Query:       MMETSP1137-20121227|10271_1  [L=336]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (336 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        71  (0.0173086); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.17s 00:00:00.46 Elapsed: 00:00:00.31
# Mc/sec: 1430.59
//
Query:       MMETSP1137-20121227|10273_1  [L=417]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (417 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        70  (0.0170648); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.13s 00:00:00.42 Elapsed: 00:00:00.41
# Mc/sec: 1342.43
//
Query:       MMETSP1137-20121227|10274_1  [L=329]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.1e-27   93.8   0.0    2.8e-27   93.4   0.0    1.2  1  TIGR00231 small_GTP: small GTP-binding protein domain
     0.0066   13.8   0.1       0.04   11.3   0.0    1.9  2  TIGR00157 TIGR00157: ribosome small subunit-dependent GTPase A
  ------ inclusion threshold ------
      0.044   10.7   0.5       0.13    9.1   0.3    1.8  1  TIGR00450 mnmE_trmE_thdF: tRNA modification GTPase TrmE


Domain annotation for each model (and alignments):
>> TIGR00231  small_GTP: small GTP-binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   93.4   0.0     2e-30   2.8e-27       4     162 ..      13     169 ..      10     171 .. 0.96

  Alignments for each domain:
  == domain 1    score: 93.4 bits;  conditional E-value: 2e-30
    TIGR00231   4 ikivivGhvdvGKstLlnsllknkisiteskpgvtrdyvteqieedGktykvnllDTaGqedfdairrlyvreverslevvdivilvldveeglekqtkeiiheakkkgvpiilvvnKiDlkd..dlktkvkslfaklnaepiielsaetgknidklfklv 162
                  +k++++G+++vGKs+Ll ++++n+   ++  ++++ d+  + i + G t+k++++D aGqe+f+ i++ y+r + +++ v+d+++  +++ ++  k+ +e+ ++   ++v+ ++v+nK+Dl+    + ++++++fa+  +  ++e+sa++  ++ ++f ++
  MMETSP1137-20121227|10274_1  13 FKLLLIGDSGVGKSSLLLRFSDNT-YTDSFISTIGVDFKVKTIDVGGRTVKLQIWDSAGQERFRTITSSYYRGAHGIIIVYDVTSN-ESYANVR-KWLQEVDRYGS-DSVVKLIVGNKCDLEAerVIAESDARDFAEQLGVLYVETSAKKALRVSDAFSML 169
                  799*********************.999999*******************************************************.*******.***********.*****************999999******99999*********99999999876 PP

>> TIGR00157  TIGR00157: ribosome small subunit-dependent GTPase A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.3   0.0     3e-05      0.04     126     142 ..      16      32 ..       8      41 .. 0.85
   2 ?    0.0   0.0     0.081   1.1e+02      67     123 ..     115     172 ..      60     174 .. 0.69

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 3e-05
    TIGR00157 126 vfaGqSGVGKSSLiNll 142
                  +++G SGVGKSSL+ + 
  MMETSP1137-20121227|10274_1  16 LLIGDSGVGKSSLLLRF 32 
                  689**********9765 PP

  == domain 2    score: 0.0 bits;  conditional E-value: 0.081
    TIGR00157  67 akniepiivlnkkdlleeedaekeqleel.knlgYkvllvsvkneegleelkeklkkr 123
                     + ++iv nk dl +e  ++++ + ++ ++lg   + +s+k++  +++ + +l+++
  MMETSP1137-20121227|10274_1 115 SDSVVKLIVGNKCDLEAERVIAESDARDFaEQLGVLYVETSAKKALRVSDAFSMLASK 172
                  3568889999999998888877555555426889888889998888888877777665 PP

>> TIGR00450  mnmE_trmE_thdF: tRNA modification GTPase TrmE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   0.3   9.5e-05      0.13     210     330 ..      13     132 ..       9     194 .. 0.64

  Alignments for each domain:
  == domain 1    score: 9.1 bits;  conditional E-value: 9.5e-05
    TIGR00450 210 lklaivGktNvGKSSLlNallkkdr..aiVsdikGttRDvvEedleleGilv..kllDtAGiReaadkvEklGiekslkaikeadlvlyvlDaskpltkdd..eliitlkkkkkdl...llvlNKiDLa.e 330
                  +kl ++G+  vGKSSLl  ++++    + +s i     D   + +++ G +v  ++ D AG            i  + +  + a  ++ v D+++++  ++  + ++++++  +d    l+v NK DL  e
  MMETSP1137-20121227|10274_1  13 FKLLLIGDSGVGKSSLLLRFSDNTYtdSFISTI---GVDFKVKTIDVGGRTVklQIWDSAGQERFR------TI--TSSYYRGAHGIIIVYDVTSNESYANvrKWLQEVDRYGSDSvvkLIVGNKCDLEaE 132
                  7999*************9998764311334433...456666667777655411456777632211......12..3344566666777777777766555446666666665554122456677777753 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (329 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       254  (0.061921); expected 82.0 (0.02)
Passed bias filter:                      226  (0.0550951); expected 82.0 (0.02)
Passed Vit filter:                        41  (0.00999512); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.34u 0.17s 00:00:00.51 Elapsed: 00:00:00.50
# Mc/sec: 868.49
//
Query:       MMETSP1137-20121227|10275_1  [L=257]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      6e-77  256.0   0.1    7.3e-77  255.7   0.0    1.0  1  TIGR03633 arc_protsome_A: proteasome endopeptidase complex, archaeal, alpha subunit
    2.2e-25   87.1   0.0    2.8e-25   86.8   0.0    1.1  1  TIGR03634 arc_protsome_B: proteasome endopeptidase complex, archaeal, beta subunit
    2.2e-09   35.2   0.1    3.8e-09   34.4   0.1    1.4  1  TIGR03690 20S_bact_beta: proteasome, beta subunit
    2.1e-05   21.9   0.0    3.6e-05   21.2   0.0    1.4  1  TIGR03691 20S_bact_alpha: proteasome, alpha subunit


Domain annotation for each model (and alignments):
>> TIGR03633  arc_protsome_A: proteasome endopeptidase complex, archaeal, alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  255.7   0.0   7.1e-80   7.3e-77       3     224 ..      13     238 ..      11     245 .. 0.95

  Alignments for each domain:
  == domain 1    score: 255.7 bits;  conditional E-value: 7.1e-80
    TIGR03633   3 YDraitvfsPdGrlyqveYareavkrgttavGiktkegvvlivdkritskllea.esiekifkiDdhvgaataGlvaDarvlidrarveaqvnrltYdepievevlakkvadlkqqytqvGGvrPfGvalliaGvddk.earlfetdPsGalleykavaiGagrekvlellekeyke.dlsldeaielalkalakale.eelkaeevevavveveekkfrklskee 224
                  YD   t+fsP+GrlyqveYa ea+ ++ ta+G+ +++gvvl+++k++tsklle+ +s ek++ iDdhv++a aG+ aDa +li++ar +aq++ + Y+ep  ve+l+++++d kq+ytq+GG rPfGv++l aG d++ + +l+++dPsG+++ +ka++iGa+++++++ll++eyke  + l +a++la+k l+k+++ ++l++++ ++a+v+ ++ k++  +  e
  MMETSP1137-20121227|10275_1  13 YDSRTTIFSPEGRLYQVEYAMEAISHAGTALGVLAEDGVVLAAEKKMTSKLLEPaKSSEKMYMIDDHVACAVAGITADANILINQARLHAQRYLYNYQEPQPVEQLVQRLCDEKQAYTQYGGLRPFGVSMLYAGWDKThGFQLYQSDPSGNYNGWKATCIGANEKAANSLLKQEYKEaTIPLAKALQLAIKVLTKTADsTALTPDKFDIATVTCKDGKVKYSQLSE 238
                  9***************************************************963799******************************************************************************98689**********************************983589***************986899**************9988766544 PP

>> TIGR03634  arc_protsome_B: proteasome endopeptidase complex, archaeal, beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.8   0.0   2.8e-28   2.8e-25       3     184 ..      41     229 ..      39     230 .. 0.92

  Alignments for each domain:
  == domain 1    score: 86.8 bits;  conditional E-value: 2.8e-28
    TIGR03634   3 TtvGikvkdgvvlAadkraslgnlvasknvkKvfkiddkialtiaGsvgdaqslvrllkaeaklyelrrkkkisvkalatllsnllkss....kflpflvqllvgGvde.egpklyslDplGsiiedkytatGsGspvalgvLedeYee.dlsleeakklavkaiksaieRDvasGdgidvvvit.kdg 184
                  T++G+ ++dgvvlAa+k+++   l   k+ +K++ idd++a ++aG+ +da+ l++  + +a+ y  + +++ +v++l + l    +++     + pf v++l +G d+ +g +ly+ Dp+G++   k t  G+  + a ++L +eY+e  + l +a +la+k ++ +++  + + d+ d++++t kdg
  MMETSP1137-20121227|10275_1  41 TALGVLAEDGVVLAAEKKMTSKLLEPAKSSEKMYMIDDHVACAVAGITADANILINQARLHAQRYLYNYQEPQPVEQLVQRLCDEKQAYtqygGLRPFGVSMLYAGWDKtHGFQLYQSDPSGNYNGWKATCIGANEKAANSLLKQEYKEaTIPLAKALQLAIKVLTKTADSTALTPDKFDIATVTcKDG 229
                  99***************************************************************9999999999999998876544441122578************9778***********************************973699*******************************96665 PP

>> TIGR03690  20S_bact_beta: proteasome, beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.4   0.1   3.7e-12   3.8e-09       2     207 ..      36     235 ..      35     247 .. 0.80

  Alignments for each domain:
  == domain 1    score: 34.4 bits;  conditional E-value: 3.7e-12
    TIGR03690   2 aphgttivalaykgGvllaGdrratqGnliasrdvekvfkadeysavgiaGtaglavelvklfqvelehyekieGvplslegkanrlaamvrsnlaa.alqGlavvpllvGydleaekGrifsydvvggkeeeeeyesvGsGsvfakgalkklyked.lseedavrvavealydaadddsatGGpdlvrkiypvvvvitedGarrvse 207
                  ++h+ t + +  ++Gv+la +++ t+  l   +  ek+++ d++ a ++aG+++ a  l++  ++  + y      p  +e  ++rl+   +       l+ + v  l++G+d++++  +++  d + g+++  + +++G+    a++ lk+ yke  +  ++a+++a++ l  +ad  +    pd     + +++v  +dG+ ++s+
  MMETSP1137-20121227|10275_1  36 ISHAGTALGVLAEDGVVLAAEKKMTSKLLEPAKSSEKMYMIDDHVACAVAGITADANILINQARLHAQRYLYNYQEPQPVEQLVQRLCDEKQAYTQYgGLRPFGVSMLYAGWDKTHG-FQLYQSDPS-GNYNGWKATCIGANEKAANSLLKQEYKEAtIPLAKALQLAIKVLTKTADSTAL--TPDK----FDIATVTCKDGKVKYSQ 235
                  58999*********************************************987766556655555566666666666778899999998766655432699999*********8654.467777765.678889999*****************98626789***********99986554..4664....66777777777776655 PP

>> TIGR03691  20S_bact_alpha: proteasome, alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.0   3.5e-08   3.6e-05      16     228 ..      28     245 ..      17     246 .. 0.79

  Alignments for each domain:
  == domain 1    score: 21.2 bits;  conditional E-value: 3.5e-08
    TIGR03691  16 raelarkGiargrsvvvlsyadGilfvaen........psaslhkiselydriafaavGkynefenlrraGvryadvrGysydrrdvtaralanvyaqtlGavfteqekPyevelvvaevgeeteedqlyrltfdGsivderefvvlGGtaeqiaaalkesyeee.lsladalrvavqalaaesekekrelkaaslevavldrsrprrafrritgeeleell 228
                  + e+a   i+ + +++ +  +dG+++ ae         p++s +k+  + d++a a +G   + + l +    +a    y+y       + +                +P+ v +  a   ++t+  qly+    G      +   +G + +  ++ lk++y+e  + la+al++a++ l++    +++ l+ +++++a++  + ++ ++ ++++   ++ll
  MMETSP1137-20121227|10275_1  28 QVEYAMEAISHAGTALGVLAEDGVVLAAEKkmtskllePAKSSEKMYMIDDHVACAVAGITADANILINQARLHAQRYLYNYQEPQPVEQLVQRLCDEKQAYTQYGGLRPFGVSMLYAGW-DKTHGFQLYQSDPSGNYNG-WKATCIGANEKAANSLLKQEYKEAtIPLAKALQLAIKVLTKT--ADSTALTPDKFDIATVTCKDGKVKYSQLSEAXSQALL 245
                  5799999***9999999999********9633222222566677888899**************99999999999999999987766555444444333333333478*******99976.667889****999998765.5567899999999999*****875279*************96..7788999999999999999999888888777666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (257 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       184  (0.0448562); expected 82.0 (0.02)
Passed bias filter:                      143  (0.034861); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.26u 0.16s 00:00:00.42 Elapsed: 00:00:00.43
# Mc/sec: 788.87
//
Query:       MMETSP1137-20121227|10277_1  [L=185]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (185 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        79  (0.0192589); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.15s 00:00:00.32 Elapsed: 00:00:00.31
# Mc/sec: 787.68
//
Query:       MMETSP1137-20121227|10278_1  [L=313]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.4e-56  187.7   2.9      5e-56  187.2   1.3    1.7  2  TIGR00401 msrA: peptide-methionine (S)-S-oxide reductase


Domain annotation for each model (and alignments):
>> TIGR00401  msrA: peptide-methionine (S)-S-oxide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  187.2   1.3   1.2e-59     5e-56       2     148 ..     105     254 ..     104     260 .. 0.92
   2 ?   -1.5   0.0      0.16   6.4e+02      67      80 ..     286     299 ..     277     302 .. 0.85

  Alignments for each domain:
  == domain 1    score: 187.2 bits;  conditional E-value: 1.2e-59
    TIGR00401   2 kitfalGCfWgveklfrkid.gvektkvGylngktenPtyeevCsgdtghaevvkveydpkvvsleeLldvffevidPttanrqgnDkGtqyrsgiyalsdedekaaeaskerlqesakykkkivteiekaen....fyeaeeyhqqylkkn 148
                   ++fa GCfWg ek  ++++ g+++t+vGy++g+t+nPtyeevCsg+tgh+e+v+v+ydp+++s+ +++  f+e++dP++++ qgnD+Gtqyrsg y+ +de+++++e+ske++++    +kki+tei++ ++    fy+ae+yhqqyl+k 
  MMETSP1137-20121227|10278_1 105 VAVFANGCFWGSEKGAWRLPfGIHSTAVGYAAGYTPNPTYEEVCSGQTGHTEAVQVVYDPSKISFVDIMRWFWESHDPSQGMGQGNDRGTQYRSGFYYFDDEQKELLERSKEAYEK--AIGKKITTEIKAXSDydqvFYYAEDYHQQYLAKP 254
                  789**********97765544***********************************************************************************************..8999*******987633347***********995 PP

  == domain 2    score: -1.5 bits;  conditional E-value: 0.16
    TIGR00401  67 eLldvffevidPtt 80 
                  +L ++f++++ Pt 
  MMETSP1137-20121227|10278_1 286 KLPKAFWDKHAPTP 299
                  67899*******95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (313 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        94  (0.0229157); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.26u 0.16s 00:00:00.42 Elapsed: 00:00:00.40
# Mc/sec: 1032.81
//
Query:       MMETSP1137-20121227|10279_1  [L=294]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.5e-27   92.6   0.0    1.8e-26   91.5   0.0    1.5  2  TIGR01130 ER_PDI_fam: protein disulfide isomerases
    6.6e-25   85.3   0.0    1.2e-24   84.5   0.0    1.4  1  TIGR01126 pdi_dom: protein disulfide-isomerase domain
    5.5e-15   53.2   0.0    1.1e-14   52.3   0.0    1.5  1  TIGR01068 thioredoxin: thioredoxin
    3.7e-07   26.9   0.0    5.3e-07   26.4   0.0    1.2  1  TIGR00424 APS_reduc: 5'-adenylylsulfate reductase, thioredoxin-independent
      2e-06   25.3   0.1    2.1e-05   22.0   0.0    2.2  2  TIGR00385 dsbE: periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily
    4.1e-06   24.4   0.4      3e-05   21.6   0.0    2.0  2  TIGR02738 TrbB: type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB
    0.00069   16.8   0.0    0.00069   16.8   0.0    2.1  2  TIGR02740 TraF-like: TraF-like protein
     0.0029   15.9   0.0       0.16   10.4   0.0    2.7  2  TIGR02196 GlrX_YruB: glutaredoxin-like protein, YruB-family
  ------ inclusion threshold ------
      0.024   12.0   4.2      0.032   11.6   2.9    1.1  1  TIGR03593 yidC_nterm: membrane protein insertase, YidC/Oxa1 family, N-terminal domain


Domain annotation for each model (and alignments):
>> TIGR01130  ER_PDI_fam: protein disulfide isomerases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0       1.1     5e+02     263     263 ..      68      68 ..      22     140 .. 0.53
   2 !   91.5   0.0   4.1e-29   1.8e-26       2     106 ..     157     259 ..     156     270 .. 0.92

  Alignments for each domain:
  == domain 1    score: -2.2 bits;  conditional E-value: 1.1
    TIGR01130 263 f 263
                   
  MMETSP1137-20121227|10279_1  68 T 68 
                  1 PP

  == domain 2    score: 91.5 bits;  conditional E-value: 4.1e-29
    TIGR01130   2 evleltkenfdd.likenelvLveFYAPWCGHCksLaPeYekAAeelkkkspkvklakvDateekelaqkygvsGyPtLkifrngesssdYnGpReaegivkylkk 106
                  +v +l + +f++ +i+ ++++Lv+F+APWCGHCk+ aPe++kAA  l+  +  v +  +D+ +  ++ +  g++G+Pt+++++ g+ s dY+GpR+a ++ ++ + 
  MMETSP1137-20121227|10279_1 157 AVEVLDEASFKKqIIEGEQAALVMFFAPWCGHCKAAAPEFKKAALRLRGGG--VRVIAIDGDQCPNVVRSLGIKGFPTIQYISRGK-SVDYTGPRSAIAMGQFAQT 259
                  68899999**862578899****************************9999..********************************7.79********998888765 PP

>> TIGR01126  pdi_dom: protein disulfide-isomerase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.5   0.0   2.6e-27   1.2e-24       3     103 ..     163     259 ..     161     261 .. 0.94

  Alignments for each domain:
  == domain 1    score: 84.5 bits;  conditional E-value: 2.6e-27
    TIGR01126   3 aenfdelvldenkdvlvefyaPWCGhCkklaPeyeklakelkkeeekvkiakvdataekelaskfkvsgfPtlkffkkgkkepvdyeGeReaeelvefvee 103
                  +++f++ +++ ++++lv f+aPWCGhCk+ aPe++k+a +l+     v +  +d ++  ++ ++++++gfPt++++++gk  +vdy+G R+a ++ +f + 
  MMETSP1137-20121227|10279_1 163 EASFKKQIIEGEQAALVMFFAPWCGHCKAAAPEFKKAALRLRGG--GVRVIAIDGDQCPNVVRSLGIKGFPTIQYISRGK--SVDYTGPRSAIAMGQFAQT 259
                  789**************************************985..59********************************..6*********999999875 PP

>> TIGR01068  thioredoxin: thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.3   0.0   2.3e-17   1.1e-14       2      82 ..     162     243 ..     161     258 .. 0.92

  Alignments for each domain:
  == domain 1    score: 52.3 bits;  conditional E-value: 2.3e-17
    TIGR01068   2 seenfeetvassdklvlvDfwAeWCgpCkmlaPvleelakele.ekvkvvKlnvdeeqeiaakygirsiPtlllfkngkevk 82 
                  +e++f++++ ++++++lv f+A+WCg Ck+ aP ++++a  l+ + v+v+ ++ d+ +++ ++ gi+  Pt+  +  gk+v+
  MMETSP1137-20121227|10279_1 162 DEASFKKQIIEGEQAALVMFFAPWCGHCKAAAPEFKKAALRLRgGGVRVIAIDGDQCPNVVRSLGIKGFPTIQYISRGKSVD 243
                  5789**********************************98876268*********************************997 PP

>> TIGR00424  APS_reduc: 5'-adenylylsulfate reductase, thioredoxin-independent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.4   0.0   1.2e-09   5.3e-07     372     438 ..     174     238 ..     146     251 .. 0.88

  Alignments for each domain:
  == domain 1    score: 26.4 bits;  conditional E-value: 1.2e-09
    TIGR00424 372 keawlvvlyapwcpfcqameasyvelaeklagsgvkvakfradgdqkefakqelqlgsfptillfpk 438
                  ++a lv+++apwc  c+a    +++ a +l g gv+v     dgdq     + l ++ fpti ++ +
  MMETSP1137-20121227|10279_1 174 EQAALVMFFAPWCGHCKAAAPEFKKAALRLRGGGVRVI--AIDGDQCPNVVRSLGIKGFPTIQYISR 238
                  57889******************************996..67********************88765 PP

>> TIGR00385  dsbE: periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.1      0.17        80       2      60 ..      14      70 ..      13      82 .. 0.72
   2 !   22.0   0.0   4.6e-08   2.1e-05      55     118 ..     166     232 ..     128     244 .. 0.77

  Alignments for each domain:
  == domain 1    score: 0.6 bits;  conditional E-value: 0.17
    TIGR00385  2 llplilflgiavalllllkrnaegedikelesaligkpvpaekeaelkekvqlltaevl 60
                 + +++l +++ +a  + +++++  + +++ +    ++  p++k+ ++ ++  ++++e +
  MMETSP1137-20121227|10279_1 14 ICYVALVAALCAAQDVSVQPQQ-QDTPQQAQTEQAQQASPSQKQDAKAARPATTSTE-A 70
                 6678888889888888888877.6788888888889999998888887775555544.3 PP

  == domain 2    score: 22.0 bits;  conditional E-value: 4.6e-08
    TIGR00385  55 ltaevlkkgklvLlnvwasWCptCraehplLkelake....glrivgvdykDesqkalkfLkelGnPy 118
                  +++++++  +  L+ ++a WC+ C+a  p  k+ a +    g+r++++d  D+ ++ ++ L+  G P 
  MMETSP1137-20121227|10279_1 166 FKKQIIEGEQAALVMFFAPWCGHCKAAAPEFKKAALRlrggGVRVIAID-GDQCPNVVRSLGIKGFPT 232
                  344677778899*****************9998775433336******9.599999999998888775 PP

>> TIGR02738  TrbB: type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.3       0.2        92       4      41 ..      12      51 ..       9      67 .. 0.45
   2 !   21.6   0.0   6.5e-08     3e-05      43      94 ..     151     219 ..     120     228 .. 0.66

  Alignments for each domain:
  == domain 1    score: 0.5 bits;  conditional E-value: 0.2
    TIGR02738  4 vllivllllagllqastldelkaLlae..eesltaaqdek 41
                 +l++ ++l+a+l++a+ +    +  +   +++++ aq+ +
  MMETSP1137-20121227|10279_1 12 KLICYVALVAALCAAQDVSVQPQQQDTpqQAQTEQAQQAS 51
                 6677777777763333322222222221122222222333 PP

  == domain 2    score: 21.6 bits;  conditional E-value: 6.5e-08
    TIGR02738  43 v................grkvlledyklvlfyqstCpyChqfapvLkqlsqqt.glevlayslDgkgla 94 
                                   ++ +  e+ +lv+f+   C +C+ +ap +k+ + +  g  v ++++Dg   +
  MMETSP1137-20121227|10279_1 151 SefddsavevldeasfkKQIIEGEQAALVMFFAPWCGHCKAAAPEFKKAALRLrGGGVRVIAIDGDQCP 219
                  233333334444445534456678999*********************998863567999999998765 PP

>> TIGR02740  TraF-like: TraF-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   1.1      0.53   2.4e+02      50      74 ..      35      59 ..      16      72 .. 0.55
   2 !   16.8   0.0   1.5e-06   0.00069     168     245 ..     173     239 ..     131     261 .. 0.76

  Alignments for each domain:
  == domain 1    score: -1.4 bits;  conditional E-value: 0.53
    TIGR02740 50 pkeeeeklepapepaaeaaaaepak 74
                 ++  +++ +++++ +a++++++ ak
  MMETSP1137-20121227|10279_1 35 QQDTPQQAQTEQAQQASPSQKQDAK 59
                 3334444444443344444444333 PP

  == domain 2    score: 16.8 bits;  conditional E-value: 1.5e-06
    TIGR02740 168 akkaglffffksdCklCeqqapilkaleer.ygievlpvSvDGkplpggkfpnvrvdagiaekLkirtvPavvlvdpkp 245
                  +++a+l +ff+  C +C+++ap  k  + r  g  v  +++DG   p+           ++ +L+i+  P++ +++  +
  MMETSP1137-20121227|10279_1 173 GEQAALVMFFAPWCGHCKAAAPEFKKAALRlRGGGVRVIAIDGDQCPN-----------VVRSLGIKGFPTIQYISR-G 239
                  6789*******************998876636899*********9999...........566667777777666665.5 PP

>> TIGR02196  GlrX_YruB: glutaredoxin-like protein, YruB-family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.1     0.094        43      35      53 ..      83     101 ..      81     117 .. 0.83
   2 !   10.4   0.0   0.00034      0.16       4      54 ..     180     233 ..     177     244 .. 0.70

  Alignments for each domain:
  == domain 1    score: 2.6 bits;  conditional E-value: 0.094
    TIGR02196  35 dsaaaeellkklgqrsvPv 53 
                  d a+ e+++ +  q++vP 
  MMETSP1137-20121227|10279_1  83 DDADPEQVVAVFAQMGVPD 101
                  788999************5 PP

  == domain 2    score: 10.4 bits;  conditional E-value: 0.00034
    TIGR02196   4 vYttpwCppCkkakeyLkskgiafeeidv...ekdsaaaeellkklgqrsvPvi 54 
                  ++  pwC++Ck+a   +k++ +  +   v   + d  +  ++++ lg ++ P+i
  MMETSP1137-20121227|10279_1 180 MFFAPWCGHCKAAAPEFKKAALRLRGGGVrviAIDGDQCPNVVRSLGIKGFPTI 233
                  7889*********99999998877765441113455666666777777777766 PP

>> TIGR03593  yidC_nterm: membrane protein insertase, YidC/Oxa1 family, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   2.9     7e-05     0.032       3      62 ..      12      69 ..      10      92 .. 0.48

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 7e-05
    TIGR03593  3 rlilavaLsfvilllwqawqkdpkpepqkppaaaqqaesqsaaaaaaasaaaaasadaps 62
                 +li +vaL++++  + +   ++++++ ++++a+++qa+++s++ ++++++aa ++++++ 
  MMETSP1137-20121227|10279_1 12 KLICYVALVAALCAAQDVSVQPQQQD-TPQQAQTEQAQQASPS-QKQDAKAARPATTSTE 69
                 66777777766666655544444443.3333333332222222.1222222222221111 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (294 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       245  (0.059727); expected 82.0 (0.02)
Passed bias filter:                      180  (0.043881); expected 82.0 (0.02)
Passed Vit filter:                        29  (0.00706972); expected 4.1 (0.001)
Passed Fwd filter:                         9  (0.00219405); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.23u 0.24s 00:00:00.47 Elapsed: 00:00:00.36
# Mc/sec: 1077.91
//
Query:       MMETSP1137-20121227|10280_1  [L=413]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (413 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        67  (0.0163335); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.14s 00:00:00.45 Elapsed: 00:00:00.36
# Mc/sec: 1514.21
//
Query:       MMETSP1137-20121227|10281_1  [L=56]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        8.1    2.5   9.2        7.6    2.6   6.4    1.0  1  TIGR02442 Cob-chelat-sub: cobaltochelatase subunit


Domain annotation for each model (and alignments):
>> TIGR02442  Cob-chelat-sub: cobaltochelatase subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   6.4    0.0019       7.6     315     343 ..      21      49 ..       5      56 .] 0.36

  Alignments for each domain:
  == domain 1    score: 2.6 bits;  conditional E-value: 0.0019
    TIGR02442 315 feeeqekeekkleekkeeakpdeekedes 343
                   +++q +++++++++++++++++ +++ +
  MMETSP1137-20121227|10281_1  21 HQHHQYQQQQQQQQQQQQQQQHQRQQQLK 49 
                  22222222222222222222222222221 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       782  (0.190639); expected 82.0 (0.02)
Passed bias filter:                      359  (0.0875183); expected 82.0 (0.02)
Passed Vit filter:                        51  (0.012433); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.19u 0.19s 00:00:00.38 Elapsed: 00:00:00.37
# Mc/sec: 199.77
//
Query:       MMETSP1137-20121227|10282_1  [L=317]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (317 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        78  (0.0190151); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.10s 00:00:00.35 Elapsed: 00:00:00.43
# Mc/sec: 973.04
//
Query:       MMETSP1137-20121227|10283_1  [L=255]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   1.3e-117  389.7   0.4   1.4e-117  389.6   0.3    1.0  1  TIGR00590 pcna: proliferating cell nuclear antigen (pcna)


Domain annotation for each model (and alignments):
>> TIGR00590  pcna: proliferating cell nuclear antigen (pcna)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  389.6   0.3  3.5e-121  1.4e-117       7     258 ..       2     254 ..       1     255 [] 0.99

  Alignments for each domain:
  == domain 1    score: 389.6 bits;  conditional E-value: 3.5e-121
    TIGR00590   7 kqasllkklleaikdlvndanfdcsesglslqalDsshvaLvslklraegfekyrCDrnlalgvnlaslskilkcannedsvvlkaedeadslalvfesekedkvsdyelklmdidvehLgipdleydavvelpskefarivrdlsqlsdsvvisitkegvkfsakGdiGsaevklkqesevd.keeeavtievkepvkltfaikYlnaftkassLsdrvtlslseevPlvveykikdvGflkffLaPkiede 258
                  + +++lkk+ +++kdlv++anfdcs +g+ +qa+Dsshv+Lv+l lra+gf++yrCDr ++lg+nl s+ k+lkc+nned+v+lk++d++d ++++fe++ +d++sd+elklmdid+ehLgipd+ey+++v++ps ef+r++rdl+ l+d+v+is++kegvkfs  G++Gs++++++q+++vd keee+v++e++epv+l+fa++Yln ftka++Ls +v l+ls++vPlvvey+i d G+++++LaPkied+
  MMETSP1137-20121227|10283_1   2 TSGGMLKKITDSMKDLVTEANFDCSTTGICVQAMDSSHVSLVALLLRADGFDHYRCDRGMSLGINLGSMGKVLKCCNNEDIVTLKSDDNGDAMTFMFENSTQDRISDFELKLMDIDSEHLGIPDTEYNCTVRMPSGEFQRMCRDLAILGDTVTISVSKEGVKFSVTGEMGSGNMTVRQNTSVDtKEEEQVHVEMDEPVSLNFALRYLNFFTKATPLSGQVILQLSKDVPLVVEYRIGDLGHIRYYLAPKIEDD 254
                  5789**********************************************************************************************************************************************************************************978999****************************************************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (255 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       133  (0.0324232); expected 82.0 (0.02)
Passed bias filter:                      116  (0.0282789); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.23u 0.17s 00:00:00.40 Elapsed: 00:00:00.35
# Mc/sec: 961.63
//
Query:       MMETSP1137-20121227|10284_1  [L=660]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.034   12.3   0.1      0.065   11.4   0.0    1.5  1  TIGR01557 myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class


Domain annotation for each model (and alignments):
>> TIGR01557  myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   1.6e-05     0.065       2      34 ..     447     475 ..     446     486 .. 0.87

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 1.6e-05
    TIGR01557   2 krvvWteelhrrFlqAvqklGgedkatPkkIle 34 
                  +r  Wt e++r  ++ v klGg ++   + I+ 
  MMETSP1137-20121227|10284_1 447 QRKEWTGEEDRIIIESVTKLGG-KW---RHIAH 475
                  6889******************.99...88854 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (660 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        89  (0.0216967); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.17s 00:00:00.57 Elapsed: 00:00:00.48
# Mc/sec: 1814.85
//
Query:       MMETSP1137-20121227|10285_1  [L=412]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00028   18.2   1.0       0.17    9.1   0.0    2.7  3  TIGR01978 sufC: FeS assembly ATPase SufC
     0.0062   14.0   0.0      0.013   13.0   0.0    1.5  1  TIGR03263 guanyl_kin: guanylate kinase
  ------ inclusion threshold ------
      0.034   11.7   0.5       0.11   10.0   0.1    1.9  2  TIGR00624 tag: DNA-3-methyladenine glycosylase I
      0.049    9.9   0.0       0.09    9.1   0.0    1.3  1  TIGR00602 rad24: checkpoint protein rad24


Domain annotation for each model (and alignments):
>> TIGR01978  sufC: FeS assembly ATPase SufC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.8   0.0   0.00081      0.83      29      52 ..     178     202 ..     155     212 .. 0.80
   2 !    9.1   0.0   0.00016      0.17     166     204 ..     249     290 ..     246     301 .. 0.72
   3 ?   -1.9   0.1      0.37   3.8e+02      98     142 ..     353     397 ..     350     400 .. 0.82

  Alignments for each domain:
  == domain 1    score: 6.8 bits;  conditional E-value: 0.00081
    TIGR01978  29 haimGpnGsGkstLsk.vlagheky 52 
                   +++Gp G Gkst+ k vla ++k+
  MMETSP1137-20121227|10285_1 178 LVVVGPRGGGKSTVIKkVLAERPKV 202
                  689**********865166666654 PP

  == domain 2    score: 9.1 bits;  conditional E-value: 0.00016
    TIGR01978 166 aiLDeiDsGlDvDalkivaegvnklree...ekalliithye 204
                  +++ e+Ds  DvDa+++ +++v+++  +    +++++++  +
  MMETSP1137-20121227|10285_1 249 VLVVEMDSTTDVDAIRTQSQQVKRVCVDqtlAHGIIVLSDAS 290
                  45669******************9865533456667666554 PP

  == domain 3    score: -1.9 bits;  conditional E-value: 0.37
    TIGR01978  98 lrsalnavrkargeeeldllefekllkeklelleldeelleRsln 142
                  lr++++a+rka +++   l++++++ ++++ + + ++++leR++ 
  MMETSP1137-20121227|10285_1 353 LRAVAQAARKAAEKAVAALHDHATEADRQAVADRAEQQVLEREIE 397
                  788899999888888888889999988888888888899999875 PP

>> TIGR03263  guanyl_kin: guanylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   0.0   1.3e-05     0.013       3      29 ..     177     203 ..     175     210 .. 0.86

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 1.3e-05
    TIGR03263   3 livisgpsGvGKstlvkklleekeelk 29 
                   +v++gp G GKst++kk+l+e++++ 
  MMETSP1137-20121227|10285_1 177 YLVVVGPRGGGKSTVIKKVLAERPKVV 203
                  689******************988865 PP

>> TIGR00624  tag: DNA-3-methyladenine glycosylase I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0      0.32   3.3e+02     115     142 ..     194     221 ..     186     236 .. 0.73
   2 ?   10.0   0.1   0.00011      0.11      69     155 ..     264     347 ..     253     371 .. 0.78

  Alignments for each domain:
  == domain 1    score: -1.3 bits;  conditional E-value: 0.32
    TIGR00624 115 sfvndkpqvrqrkadseipsvsseskal 142
                     +++p+v   + +s+ip+++ + ++ 
  MMETSP1137-20121227|10285_1 194 KVLAERPKVVYVELSSDIPTIAGKLRSR 221
                  556789999999999****998776554 PP

  == domain 2    score: 10.0 bits;  conditional E-value: 0.00011
    TIGR00624  69 rytdadverlllddgivrnrakieatianaraalelesed.lvellwsfvndkpqvrqrkadseipsvsseskalskelkkrgfrfvg 155
                  r + ++v+r+ +d+ +  +      ++++a aa +l+ +    ++lw    d+ +++ + +++ +     +++a s++l+kr f+ +g
  MMETSP1137-20121227|10285_1 264 RTQSQQVKRVCVDQTL-AHG---IIVLSDASAAFKLNPDRaRQDFLWVDDFDESEMQAFLDKTGVLPAQGKATATSRGLRKRFFNELG 347
                  5567778888888833.332...23567899999998665489****99999************999999************887666 PP

>> TIGR00602  rad24: checkpoint protein rad24
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   0.0   8.8e-05      0.09     103     131 ..     168     197 ..     157     211 .. 0.76

  Alignments for each domain:
  == domain 1    score: 9.1 bits;  conditional E-value: 8.8e-05
    TIGR00602 103 qvLeskkkriLLitGPsGCgKsTvik.iLs 131
                  +v + ++ + L + GP G gKsTvik +L+
  MMETSP1137-20121227|10285_1 168 HVSNDQPVKYLVVVGPRGGGKSTVIKkVLA 197
                  4556678889***************72555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (412 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       338  (0.0823988); expected 82.0 (0.02)
Passed bias filter:                      226  (0.0550951); expected 82.0 (0.02)
Passed Vit filter:                        44  (0.0107265); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.43u 0.17s 00:00:00.60 Elapsed: 00:00:00.60
# Mc/sec: 906.33
//
Query:       MMETSP1137-20121227|10288_1  [L=207]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0091   12.3   0.1      0.013   11.8   0.1    1.1  1  TIGR03098 ligase_PEP_1: acyl-CoA ligase (AMP-forming), exosortase A-associated
  ------ inclusion threshold ------
      0.027   12.1   0.0      0.032   11.9   0.0    1.4  1  TIGR03887 thiocyan_alph: thiocyanate hydrolase, gamma subunit


Domain annotation for each model (and alignments):
>> TIGR03098  ligase_PEP_1: acyl-CoA ligase (AMP-forming), exosortase A-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.8   0.1   6.2e-06     0.013      10      66 ..      55     111 ..      48     117 .. 0.92

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 6.2e-06
    TIGR03098  10 aerepdatalklkdrtltyaaLseevkalasglkalglkrgeRvaiylekrletvla 66 
                    r+p a a+k ++r++   +Lsee  +++++l  lgl+r+  v ++ +kr   +++
  MMETSP1137-20121227|10288_1  55 FVRSPRANAVKVRTRKVKRFTLSEEDAEIKRALCELGLTRSVHVPVHHQKRSTRLVS 111
                  5699***********************************************988765 PP

>> TIGR03887  thiocyan_alph: thiocyanate hydrolase, gamma subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   1.6e-05     0.032     140     194 ..      87     139 ..      16     145 .. 0.87

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 1.6e-05
    TIGR03887 140 laefglklpddvevrvedsnqktrflvlplrpegtegwseeqlaeivtrdtligv 194
                  l+e+g  l   v+v v+  ++ tr + lpl  eg ++  e  +   ++r++ i v
  MMETSP1137-20121227|10288_1  87 LCELG--LTRSVHVPVHHQKRSTRLVSLPLEAEGQDEAKESLVELGIAREVQISV 139
                  55655..567899***********************9988877777999988876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (207 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       153  (0.0372989); expected 82.0 (0.02)
Passed bias filter:                      109  (0.0265724); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.22u 0.18s 00:00:00.40 Elapsed: 00:00:00.54
# Mc/sec: 505.96
//
Query:       MMETSP1137-20121227|10289_1  [L=151]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.012   13.6   0.1      0.029   12.4   0.0    1.7  2  TIGR00264 TIGR00264: alpha-NAC homolog


Domain annotation for each model (and alignments):
>> TIGR00264  TIGR00264: alpha-NAC homolog
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0       0.2     8e+02       6      18 ..       1      13 [.       1      19 [. 0.79
   2 ?   12.4   0.0   7.2e-06     0.029      12      72 ..      37      95 ..      27     117 .. 0.77

  Alignments for each domain:
  == domain 1    score: -1.9 bits;  conditional E-value: 0.2
    TIGR00264  6 vnPkqlkkmqkmm 18
                 +nP +l km   +
  MMETSP1137-20121227|10289_1  1 MNPEKLAKMAAQV 13
                 8999999997655 PP

  == domain 2    score: 12.4 bits;  conditional E-value: 7.2e-06
    TIGR00264 12 kkmqkmmkqlGlemedld.veevii.klddeelifknPkvsvleilGvktyqitGkakkekve 72
                 k++q+ +k lG++   +  +eev + k +   + f nPkv+    +  +ty + G+a+ +k++
  MMETSP1137-20121227|10289_1 37 KRLQNTLKRLGVNN--IPaIEEVNLfKDNGTVIHFSNPKVQA--SIAANTYVVSGHAETKKLQ 95
                 8999*******975..44266665403333444588999986..56789*******9888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (151 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       137  (0.0333983); expected 82.0 (0.02)
Passed bias filter:                      122  (0.0297416); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.18u 0.14s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 687.25
//
Query:       MMETSP1137-20121227|10291_1  [L=96]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (96 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        56  (0.0136519); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.34
# Mc/sec: 372.68
//
Query:       MMETSP1137-20121227|10292_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        62  (0.0151146); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.28
# Mc/sec: 236.67
//
Query:       MMETSP1137-20121227|10293_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        28  (0.00682594); expected 82.0 (0.02)
Passed bias filter:                       28  (0.00682594); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.15s 00:00:00.27 Elapsed: 00:00:00.26
# Mc/sec: 263.98
//
Query:       MMETSP1137-20121227|10294_1  [L=37]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (37 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        36  (0.00877621); expected 82.0 (0.02)
Passed bias filter:                       35  (0.00853242); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:01.59
# Mc/sec: 30.71
//
Query:       MMETSP1137-20121227|10295_1  [L=395]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (395 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       177  (0.0431497); expected 82.0 (0.02)
Passed bias filter:                      103  (0.0251097); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.16s 00:00:00.50 Elapsed: 00:00:00.41
# Mc/sec: 1271.60
//
Query:       MMETSP1137-20121227|10297_1  [L=80]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (80 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        31  (0.00755729); expected 82.0 (0.02)
Passed bias filter:                       28  (0.00682594); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:00.38
# Mc/sec: 277.87
//
Query:       MMETSP1137-20121227|10298_1  [L=180]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (180 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        79  (0.0192589); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.15s 00:00:00.32 Elapsed: 00:00:00.33
# Mc/sec: 719.94
//
Query:       MMETSP1137-20121227|10299_1  [L=379]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (379 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       188  (0.0458313); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.16s 00:00:00.49 Elapsed: 00:00:00.47
# Mc/sec: 1064.34
//
Query:       MMETSP1137-20121227|10302_1  [L=251]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (251 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       185  (0.0451); expected 82.0 (0.02)
Passed bias filter:                      104  (0.0253535); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.16s 00:00:00.41 Elapsed: 00:00:00.35
# Mc/sec: 946.55
//
Query:       MMETSP1137-20121227|10303_1  [L=290]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (290 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       214  (0.0521697); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.18s 00:00:00.44 Elapsed: 00:00:00.27
# Mc/sec: 1417.66
//
Query:       MMETSP1137-20121227|10305_1  [L=142]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-28   96.9   1.1    1.4e-28   96.9   0.8    1.8  2  TIGR03636 L23_arch: archaeal ribosomal protein L23


Domain annotation for each model (and alignments):
>> TIGR03636  L23_arch: archaeal ribosomal protein L23
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.7      0.31   1.3e+03      55      69 ..       8      22 ..       4      28 .. 0.73
   2 !   96.9   0.8   3.4e-32   1.4e-28       1      77 []      66     142 .]      66     142 .] 0.98

  Alignments for each domain:
  == domain 1    score: -2.3 bits;  conditional E-value: 0.31
    TIGR03636 55 KkAyvkLkeekkAee 69
                 KkA   L++  kA++
  MMETSP1137-20121227|10305_1  8 KKAAKALAQGTKAKK 22
                 777777877777765 PP

  == domain 2    score: 96.9 bits;  conditional E-value: 3.4e-32
    TIGR03636   1 plvtEKalkliekenkltfiVdrkatKkdikeaveklfdvkVekvntlitpkgeKkAyvkLkeekkAeeiasrlGvl 77 
                  pl+tE a+k ie++n+l fiVd++a+K++i eav +++++k +kvntli p+g KkAyv+L+ +++A ++a+++G++
  MMETSP1137-20121227|10305_1  66 PLTTESAMKKIEENNTLVFIVDTRANKRQITEAVRRMYEIKTAKVNTLIRPDGLKKAYVRLTTDYDALDVANKIGII 142
                  789************************************************************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (142 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       218  (0.0531448); expected 82.0 (0.02)
Passed bias filter:                      123  (0.0299854); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.18u 0.18s 00:00:00.36 Elapsed: 00:00:00.33
# Mc/sec: 567.95
//
Query:       MMETSP1137-20121227|10306_1  [L=696]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (696 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        42  (0.0102389); expected 82.0 (0.02)
Passed bias filter:                       33  (0.00804486); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.16s 00:00:00.56 Elapsed: 00:00:00.56
# Mc/sec: 1640.44
//
Query:       MMETSP1137-20121227|10307_1  [L=666]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   2.6e-118  394.1   0.1     6e-118  392.9   0.0    1.5  2  TIGR00955 3a01204: pigment precursor permease
    5.2e-80  267.3  12.2    1.1e-61  206.7   0.2    2.6  2  TIGR00956 3a01205: pleiotropic drug resistance family protein
    8.7e-28   95.4   0.0    8.7e-28   95.4   0.0    2.0  2  TIGR02857 CydD: thiol reductant ABC exporter, CydD subunit
    3.2e-27   93.2   0.0      5e-27   92.5   0.0    1.3  1  TIGR03608 L_ocin_972_ABC: putative bacteriocin export ABC transporter, lactococcin 972 group
    1.1e-26   91.7   0.1    1.5e-26   91.2   0.1    1.2  1  TIGR01188 drrA: daunorubicin resistance ABC transporter, ATP-binding protein
    3.5e-26   90.0   0.1    5.4e-26   89.4   0.0    1.2  1  TIGR02982 heterocyst_DevA: ABC exporter ATP-binding subunit, DevA family
      3e-25   87.0   0.3    6.9e-24   82.5   0.0    2.1  2  TIGR02673 FtsE: cell division ATP-binding protein FtsE
    7.5e-25   85.6   0.0    2.7e-24   83.8   0.0    1.7  2  TIGR02315 ABC_phnC: phosphonate ABC transporter, ATP-binding protein
    7.7e-25   85.5   0.0    1.3e-24   84.8   0.0    1.3  1  TIGR03864 PQQ_ABC_ATP: ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system
    6.1e-24   82.5   0.0    9.4e-24   81.9   0.0    1.2  1  TIGR00972 3a0107s01c2: phosphate ABC transporter, ATP-binding protein
    7.5e-24   81.8   0.1    7.5e-24   81.8   0.1    1.7  1  TIGR03375 type_I_sec_LssB: type I secretion system ATPase
    1.5e-23   81.4   0.0    2.7e-23   80.5   0.0    1.3  1  TIGR00968 3a0106s01: sulfate ABC transporter, ATP-binding protein
    1.8e-22   78.0   0.1    5.4e-22   76.4   0.0    1.7  2  TIGR00960 3a0501s02: type II secretory pathway family protein
    7.7e-22   75.4   0.6    1.9e-21   74.2   0.2    1.7  2  TIGR02868 CydC: thiol reductant ABC exporter, CydC subunit
    5.7e-21   72.7   0.0      1e-20   71.9   0.0    1.4  1  TIGR03873 F420-0_ABC_ATP: proposed F420-0 ABC transporter, ATP-binding protein
    9.1e-21   72.2   0.0    1.5e-20   71.5   0.0    1.3  1  TIGR02211 LolD_lipo_ex: lipoprotein releasing system, ATP-binding protein
    1.3e-20   71.6   0.0    2.1e-20   70.9   0.0    1.2  1  TIGR03258 PhnT: 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT
    1.4e-20   71.8   0.1    5.1e-20   70.0   0.0    1.8  2  TIGR03771 anch_rpt_ABC: anchored repeat-type ABC transporter, ATP-binding subunit
    1.5e-20   71.5   0.2    3.8e-20   70.1   0.0    1.6  2  TIGR03410 urea_trans_UrtE: urea ABC transporter, ATP-binding protein UrtE
    1.5e-20   71.5   0.0    3.1e-20   70.5   0.0    1.4  1  TIGR01189 ccmA: heme ABC exporter, ATP-binding protein CcmA
    3.1e-20   70.3   0.5    6.8e-20   69.2   0.3    1.5  1  TIGR01166 cbiO: cobalt ABC transporter, ATP-binding protein
    3.9e-20   70.2   0.1    6.6e-20   69.4   0.1    1.3  1  TIGR03265 PhnT2: putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein
    3.9e-20   69.9   0.2    5.8e-20   69.3   0.1    1.2  1  TIGR01288 nodI: nodulation ABC transporter NodI
    1.3e-19   67.8   0.0    2.1e-19   67.1   0.0    1.2  1  TIGR00958 3a01208: antigen peptide transporter 2
    1.4e-19   68.5   0.0    2.7e-19   67.5   0.0    1.4  1  TIGR03740 galliderm_ABC: lantibiotic protection ABC transporter, ATP-binding subunit
    1.7e-19   67.9   0.0    2.4e-19   67.4   0.0    1.2  1  TIGR01187 potA: polyamine ABC transporter, ATP-binding protein
    1.8e-19   68.1   0.0    3.5e-19   67.1   0.0    1.4  1  TIGR02769 nickel_nikE: nickel import ATP-binding protein NikE
    4.3e-19   66.8   0.0    9.4e-19   65.7   0.0    1.5  2  TIGR02142 modC_ABC: molybdate ABC transporter, ATP-binding protein
    4.6e-19   66.1   0.0    9.4e-19   65.1   0.0    1.4  2  TIGR02203 MsbA_lipidA: lipid A export permease/ATP-binding protein MsbA
    5.1e-19   66.3   0.1    1.8e-18   64.5   0.1    1.7  1  TIGR03005 ectoine_ehuA: ectoine/hydroxyectoine ABC transporter, ATP-binding protein EhuA
    4.7e-18   63.2   0.0    7.3e-18   62.6   0.0    1.2  1  TIGR02770 nickel_nikD: nickel import ATP-binding protein NikD
    5.9e-18   63.2   0.0    9.7e-18   62.5   0.0    1.2  1  TIGR03522 GldA_ABC_ATP: gliding motility-associated ABC transporter ATP-binding subunit GldA
    8.4e-18   62.5   0.0    1.4e-17   61.7   0.0    1.3  1  TIGR02324 CP_lyasePhnL: phosphonate C-P lyase system protein PhnL
    9.7e-18   62.5   0.0    1.6e-17   61.8   0.0    1.2  1  TIGR03411 urea_trans_UrtD: urea ABC transporter, ATP-binding protein UrtD
    1.4e-17   61.8   0.0    4.4e-17   60.1   0.0    1.8  1  TIGR01978 sufC: FeS assembly ATPase SufC
    2.3e-17   60.7   0.0    3.5e-17   60.1   0.0    1.2  1  TIGR02204 MsbA_rel: ABC transporter, permease/ATP-binding protein
    2.5e-17   60.9   0.0    2.4e-16   57.6   0.0    1.9  2  TIGR01186 proV: glycine betaine/L-proline transport ATP binding subunit
    6.4e-17   59.1   0.0    2.1e-16   57.4   0.0    1.7  1  TIGR01842 type_I_sec_PrtD: type I secretion system ATPase
      1e-16   59.0   0.0    1.8e-16   58.2   0.0    1.3  1  TIGR01277 thiQ: thiamine ABC transporter, ATP-binding protein
    4.5e-16   56.3   0.1    8.3e-16   55.4   0.0    1.3  1  TIGR03797 NHLM_micro_ABC2: NHLM bacteriocin system ABC transporter, ATP-binding protein
    5.2e-16   56.0   0.0    1.3e-15   54.7   0.0    1.5  1  TIGR02633 xylG: D-xylose ABC transporter, ATP-binding protein
    5.8e-16   54.4   0.1    8.9e-16   53.8   0.1    1.2  1  TIGR01257 rim_protein: rim ABC transporter
    5.9e-16   55.6   0.0    8.3e-16   55.1   0.0    1.1  1  TIGR03796 NHLM_micro_ABC1: NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein
    2.4e-15   53.9   0.0    3.4e-15   53.4   0.0    1.1  1  TIGR01193 bacteriocin_ABC: ABC-type bacteriocin transporter
    2.6e-15   54.1   0.0    3.8e-15   53.5   0.0    1.1  1  TIGR02314 ABC_MetN: D-methionine ABC transporter, ATP-binding protein
    2.1e-14   51.5   0.0    3.4e-14   50.8   0.0    1.3  1  TIGR01184 ntrCD: nitrate ABC transporter, ATP-binding proteins C and D
    2.4e-14   50.4   0.0    6.2e-14   49.0   0.0    1.6  1  TIGR01846 type_I_sec_HlyB: type I secretion system ATPase
    5.3e-13   46.2   0.0    7.2e-07   25.9   0.0    2.1  2  TIGR03269 met_CoM_red_A2: methyl coenzyme M reductase system, component A2
    2.2e-10   37.9   0.0    4.6e-10   36.8   0.0    1.4  1  TIGR03415 ABC_choXWV_ATP: choline ABC transporter, ATP-binding protein
    2.2e-10   37.6   0.0    3.2e-10   37.1   0.0    1.2  1  TIGR01192 chvA: glucan exporter ATP-binding protein
    1.7e-09   35.4   0.1    6.5e-05   20.4   0.0    2.3  2  TIGR02323 CP_lyasePhnK: phosphonate C-P lyase system protein PhnK
    3.4e-08   30.3   0.1    0.00034   17.1   0.0    2.1  2  TIGR03719 ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family
    4.8e-06   23.2   0.8    5.2e-06   23.1   0.0    1.4  1  TIGR01194 cyc_pep_trnsptr: cyclic peptide transporter
    5.4e-05   19.4   0.4     0.0081   12.2   0.0    2.1  2  TIGR00630 uvra: excinuclease ABC subunit A
    0.00032   16.0   0.0    0.00046   15.5   0.0    1.1  1  TIGR01271 CFTR_protein: cystic fibrosis transmembrane conductor regulator (CFTR)
    0.00058   15.2   0.0    0.00094   14.5   0.0    1.3  1  TIGR00957 MRP_assoc_pro: multi drug resistance-associated protein (MRP)
  ------ inclusion threshold ------
      0.012   13.0   0.1      0.018   12.4   0.1    1.2  1  TIGR00157 TIGR00157: ribosome small subunit-dependent GTPase A
      0.013   13.0   0.1      0.022   12.3   0.0    1.4  1  TIGR02322 phosphon_PhnN: phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN
      0.014   11.4   0.2       0.02   10.9   0.1    1.1  1  TIGR00929 VirB4_CagE: type IV secretion/conjugal transfer ATPase, VirB4 family


Domain annotation for each model (and alignments):
>> TIGR00955  3a01204: pigment precursor permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0       3.1   2.1e+02     258     308 ..       4      57 ..       2      87 .. 0.69
   2 !  392.9   0.0  8.6e-120    6e-118      30     559 ..     112     637 ..      81     652 .. 0.89

  Alignments for each domain:
  == domain 1    score: -2.0 bits;  conditional E-value: 3.1
    TIGR00955 258 f.selglpcPenynpadFvlkvlavepgseee..sretiekicdaeaksklsre 308
                  f ++lg ++P+ +  ++F++++ a +++s  +  ++ ++e++  ++a+s+ ++ 
  MMETSP1137-20121227|10307_1   4 FeTSLGRQVPAGVSLPEFLVDLTAGSQSSVMQtfEVYSAEYLASQYADSEFGKT 57 
                  51468999*************999988887763333444555566666665554 PP

  == domain 2    score: 392.9 bits;  conditional E-value: 8.6e-120
    TIGR00955  30 alarkkpekellknvsGvaksGellAvlGsSGaGKtTLlnalafrsekglkvsgdvllnGekveakemraisayvqqddlfiptltvrehLmfsahlrlkrrltkkekrerveevleelgLrkcadtrigvpgrvkglSgGerkRlalaselltdPilLfcDEPTsGLDsfsaasvvkvLkklaqkgktviltiHQPsselfelfdkiillaeGrvvylGspeeavkffs.elglpcPenynpadFvlkvlavepgseee..sretiekicdaeaksklsreveentnlasgkekklvkdseneekikykasfltqflvllkRsllsvlrdplllkvrllqvivvavligliylg..qeltqkgvqningalFllltemtFqtvfavinvftaelpvflREtasglYrlsaYylaktlaelPlliilpllflsivYwmiglksgalkfltalllvvlvanvatsfglllscafestslalsvappvvipfllfgGfflnvdsvPvyfkwlsylSwfrYanEallinqwsdvkeie 559
                  +  +kk+  ++lkn +G ++ G+  A+lG+SG+GKtTL+++l++r++ g  ++g++l  G+  ++k++r+ ++yv+q+d +++ ltvr+ Lm++a+l+l  + tkk k+ rv+e le+lgL+ cadt+ig    ++g+SgG+ kR  +a  l+++P+++f+DEPTsGLDsf+a++v  vL++la+ g+t+++tiH P++  f+ fd +++l +G ++y+G  ++   ff+ +lg ++P  +  +++++++ + +++   +   + ++e++ +++a+s+ +++ ++      +++k+l++  +  e+  ++ + l+ +  +l   +l+  ++ + l  r++ + + ++li ++y+g   + + + +q++ + l+++++   +   +a ++ +t ++p+f RE+a+g+Y+   Yyl+k++ e  l +++++lf   v+ +  l+ ++  f++ + l+++    ++ +++ +++++ + + a +++p  v + + fgG+fl +d++P ++ w+s++S++rYa+ a++ nq+ d   +e
  MMETSP1137-20121227|10307_1 112 VPLKKKQSLTILKNLAGSFEAGKATALLGPSGSGKTTLMDVLSNRKTVGK-IEGEILFGGRTPTKKMLRRLCGYVEQFDTLVGELTVRQMLMYTAELKLTTNFTKKDKELRVQEALETLGLTACADTVIG-GTLKRGVSGGQLKRTNIALSLISQPPVIFLDEPTSGLDSFMANEVATVLRELARLGRTIVCTIHSPTAYAFSCFDAVMMLRDGMTIYEGPQDHIGAFFEtSLGRQVPPGVSLPEWLVDLTSGSQSAVMQtgAVYSAEELANQYANSEFGKKRMQLNI---EQAKTLQASPTPIERDGHHPGPLKALSTILSYRMLKHYKSGEYLGPRIGDKFIFGLLILTLYWGigSNTDVQSIQSTASLLYFIVALCGY-GAAAFVPSLTLDRPLFYREVADGCYHPLVYYLSKFIEEATLCVLTSFLFSLLVFFACKLQGSFFIFVLSYYLTTM---MGILIAYGVAAVVPTLEAANALLPTYVTLCMYFGGLFLLFDKIPDAWFWFSWTSFLRYAWGAMMNNQFGDSVPGE 637
                  234567899*************************************9995.5599***************************************************************************.66689*********************************************************************************************7368******************9999875554478889999999999999988766554...3456777777777888889999******************************************63445567888888888877776666.567899******************************************************998777777766655...577789999************************************************************998877 PP

>> TIGR00956  3a01205: pleiotropic drug resistance family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  206.7   0.2   1.5e-63   1.1e-61     754     986 ..      98     329 ..      64     329 .. 0.88
   2 !   72.9   4.3   3.6e-23   2.5e-21     274     614 ..     310     632 ..     307     642 .. 0.84

  Alignments for each domain:
  == domain 1    score: 206.7 bits;  conditional E-value: 1.5e-63
    TIGR00956 754 esgeeifewrdltyevkikk.ekrvlLdevdGwvkPGkltALmGasGAGkttLlnvLaeRvttGvitegdrlvngr.kldssFqRsiGYvqqqDlHletstvreaLrfsAylRqpkevskkekneyveevikllelesyadAvvGvpGe.GLnveqRkrltigveLvAkPklllFlDePtsGLDsqtawsivkllrkladaGqailCtiHqPsailleeFDrLLllqkGGktvYfG 986
                    g    ++rdl y v++kk +++++L+++ G ++ Gk tAL+G sG GkttL++vL++R+t+G i+ g++l +gr + ++  +R  GYv+q D  + + tvr  L ++A l+ + + +kk+k+  v+e ++ l+l+  ad v+G + + G++  q kr  i+  L+ +P  ++FlDePtsGLDs  a  +  +lr+la  G++i+CtiH P a  +  FD +++l+ G  t+Y G
  MMETSP1137-20121227|10307_1  98 SRG-LQISFRDLKYSVPLKKkQSLTILKNLAGSFEAGKATALLGPSGSGKTTLMDVLSNRKTVGKIE-GEILFGGRtPTKKMLRRLCGYVEQFDTLVGELTVRQMLMYTAELKLTTNFTKKDKELRVQEALETLGLTACADTVIGGTLKrGVSGGQLKRTNIALSLISQP-PVIFLDEPTSGLDSFMANEVATVLRELARLGRTIVCTIHSPTAYAFSCFDAVMMLRDG-MTIYEG 329
                  233.34579********98615689******************************************.777777762678889999**********************************************************977666********************.89****************************************************9887.999977 PP

  == domain 2    score: 72.9 bits;  conditional E-value: 3.6e-23
    TIGR00956 274 ayelFdkvvvlyeGkqiyfGkadkakeyFek.mGfkCpdRqttadFLtsltspkereikkgyekkvprtakefekywrnspeyae.lekeideylerveeekekeaikesavakkskrtrkkskytvsfsqqvkyilaRellrlkgdasvtlikvvgniimalilssvfynleknts..dfyvrggalffallfnafsslleiaslyearpivekhrkyalyhPsadalasilselPvkliesvvfniilyflvnlrreagrFffylLilflatlvmshlFrsigavtktlseAmtlaallllalslytgfviprkeilkWskWiayvnPlayafesllvnefha 614
                  a+  Fd v++l +G  iy G++d++ ++Fe+ +G + p+  + +++L +lts ++  + +        +a+e+ + + ns+ +++ ++ +i++ ++                 + s +  +   +     + +  il+  +l+ +++  +   ++  + i +l++ ++++ + +nt+  ++ + ++ l+f + ++ + + + + sl   rp+++++ +   yhP    l+ ++ e  + +++s +f+++++f  +l+   g+Ff + L   l+t++   +   ++av+ tl+ A++l    + + + ++g  +   +i+  + W ++ + l+ya+ ++++n f +
  MMETSP1137-20121227|10307_1 310 AFSCFDAVMMLRDGMTIYEGPQDHIGAFFETsLGRQVPPGVSLPEWLVDLTSGSQSAVMQ---TGAVYSAEELANQYANSEFGKKrMQLNIEQAKTL----------------QASPTPIERDGHHPGPLKALSTILSYRMLKHYKSGEYLGPRIGDKFIFGLLILTLYWGIGSNTDvqSIQSTASLLYFIVALCGYGAAAFVPSLTLDRPLFYREVADGCYHPLVYYLSKFIEEATLCVLTSFLFSLLVFFACKLQ---GSFFIFVLSYYLTTMMGILIAYGVAAVVPTLEAANALLPTYVTLCMYFGGLFLLFDKIPDAWFWFSWTSFLRYAWGAMMNNQFGD 632
                  7999*************************9648********************9887765...4456689**********98764144455444433................2222333333344444555666666667777778889999*******************9977522667778889*****************************************************************9985...89999888888877666666778**************99999999999**9999*****9999******************9965 PP

>> TIGR02857  CydD: thiol reductant ABC exporter, CydD subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.4   0.0   1.2e-29   8.7e-28     287     519 ..      69     308 ..      61     320 .. 0.80
   2 ?   -1.8   1.0       3.4   2.4e+02     117     169 ..     518     572 ..     512     601 .. 0.55

  Alignments for each domain:
  == domain 1    score: 95.4 bits;  conditional E-value: 1.2e-29
    TIGR02857 287 kaegvaaaealvevldaeeqpeaekapltaaassslelenvsvay...egrk.palkevsltvepgelvalvGaSGaGKstllklllg..fvepteGailvngaelaeldadswrkqiawvpQkPllfeg.tvaenirlarkdaseaevkealeragldelvkalp..qgleteiGer.gagLSgGqrqRlaLArallrdapllllDEPtahLDaeteaevlealrela.egrtvllvaHrlal 519
                  k++g+  ++++   ++ +   + +++ +++ +  ++++++++++    + ++  +lk++  ++e+g+ +al+G+SG+GK+tl+++l+   +v   eG+il +g+     +++ +r+ +++v Q  +l+ + tv++ +    +   +++  +  ++  ++e +++l+  +  +t iG    +g+SgGq +R  +A  l+++ p++ lDEPt+ LD+  ++ev   lrela  grt++   H++  
  MMETSP1137-20121227|10307_1  69 KTQGRMCVNEVKVQIE-KGSSTRKESTAKRSRGLQISFRDLKYSVplkKKQSlTILKNLAGSFEAGKATALLGPSGSGKTTLMDVLSNrkTVGKIEGEILFGGR---TPTKKMLRRLCGYVEQFDTLVGElTVRQMLMYTAELKLTTNFTKKDKELRVQEALETLGltACADTVIGGTlKRGVSGGQLKRTNIALSLISQPPVIFLDEPTSGLDSFMANEVATVLRELArLGRTIVCTIHSPTA 308
                  5677777888877777.55555666666666666********998432233467899*****************************9622566779********...4556789*********99998662666666655555566777777888888888877651145788887552789***********************************************679999999999765 PP

  == domain 2    score: -1.8 bits;  conditional E-value: 3.4
    TIGR02857 117 Yfarylpqlvlavivplvilaavltadwi..salillltlPlipiFmiLiGsaaq 169
                  Y+++++ + +l+v++  ++ + v++a  +  s  i +l+  l  +  iLi + ++
  MMETSP1137-20121227|10307_1 518 YLSKFIEEATLCVLTSFLFSLLVFFACKLqgSFFIFVLSYYLTTMMGILIAYGVA 572
                  6666666666666666666666655543311233444444444444444444333 PP

>> TIGR03608  L_ocin_972_ABC: putative bacteriocin export ABC transporter, lactococcin 972 group
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.5   0.0   7.2e-29     5e-27       6     196 ..     115     308 ..     112     320 .. 0.86

  Alignments for each domain:
  == domain 1    score: 92.5 bits;  conditional E-value: 7.2e-29
    TIGR03608   6 kkfkdkeilkklslkiekGelvaivGesGsGKstlLnilgllekkd..sgkvilegkekaklkskkaskllreklgylFqnfaLlenetveenlela..lklk.kkskkekekkkkevlekvglekklkkki.....yelsgGekqRvalarillkeselilADEPtgsLDkknreevlellkelkeegktiiivtHdpev 196
                  kk+++ +ilk+l  ++e+G+ +a++G sGsGK+tl+ +l++  ++   +g++++ g++        ++k+lr   gy+ q  +L+ + tv++ l+ +  lkl+ + +kk+ke +++e+le++gl+++ ++ i       +sgG+ +R  +a  l+ ++++i+ DEPt+ LD+   +ev ++l+el++ g+ti++  H+p+ 
  MMETSP1137-20121227|10307_1 115 KKKQSLTILKNLAGSFEAGKATALLGPSGSGKTTLMDVLSNRKTVGkiEGEILFGGRT-------PTKKMLRRLCGYVEQFDTLVGELTVRQMLMYTaeLKLTtNFTKKDKELRVQEALETLGLTACADTVIggtlkRGVSGGQLKRTNIALSLISQPPVIFLDEPTSGLDSFMANEVATVLRELARLGRTIVCTIHSPTA 308
                  6788899********************************9988765225888887777.......67899**********************99865224443156788999999***********99998843333468*********************************************************9865 PP

>> TIGR01188  drrA: daunorubicin resistance ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.2   0.1   2.2e-28   1.5e-26       9     207 ..     123     330 ..     115     394 .. 0.85

  Alignments for each domain:
  == domain 1    score: 91.2 bits;  conditional E-value: 2.2e-28
    TIGR01188   9 vdgvnlkveegevfglLGPnGAGKtttikmLttllk..PdsGtarvaGyDvvrepdevRrsigvvpqkasvdedLtarenlellgel...yglpkkeaeeraeellelvelkeaadkkvk.....tysgGmrrrlelaasliaqPevlfLDEPtiGLDprtrraiwdlieelkkegvtilltthylee.adkladrvaiidkGkiiaedt 207
                  ++++  + e+g+  +lLGP G GKtt++++L+   +    +G+    G   +   + +Rr  g v q  ++  +Lt r+ l+ ++el    ++ kk +e r++e le++ l+  ad  ++       sgG+ +r ++a sli+qP v+fLDEPt+GLD+  ++++  +++el + g ti+ t h     a +  d v +++ G  i e+ 
  MMETSP1137-20121227|10307_1 123 LKNLAGSFEAGKATALLGPSGSGKTTLMDVLSNRKTvgKIEGEILFGGR--TPTKKMLRRLCGYVEQFDTLVGELTVRQMLMYTAELkltTNFTKKDKELRVQEALETLGLTACADTVIGgtlkrGVSGGQLKRTNIALSLISQPPVIFLDEPTSGLDSFMANEVATVLRELARLGRTIVCTIHSPTAyAFSCFDAVMMLRDGMTIYEGP 330
                  5666667789999******************974330034555555554..4444689****************************944347889999******************99862222268*****************************************************999986541444558888888888877765 PP

>> TIGR02982  heterocyst_DevA: ABC exporter ATP-binding subunit, DevA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.4   0.0   7.7e-28   5.4e-26      19     201 ..     121     305 ..     103     325 .. 0.84

  Alignments for each domain:
  == domain 1    score: 89.4 bits;  conditional E-value: 7.7e-28
    TIGR02982  19 qvlfdinleiepgeiviltGpsGsGkttlltligglrsvqeGelkvlgkelkgasekelvqvrrkiGyifqahnllesltaeqnvrmalelk..eklsakeakakaeelleavglee.....rldykpedlsgGqkqrvaiaralvarPklvladePtaaldkksgrevvellqklareqgttillvthd 201
                   +l+++  + e+g    l GpsGsGkttl+ +++  ++v  G+  + g+ l g    + + +rr  Gy+ q   l+  lt++q +  ++elk  +++++k+++ +++e le++gl             + +sgGq +r  ia +l+++P +++ dePt+ ld+  ++ev ++l++lar  g ti+   h 
  MMETSP1137-20121227|10307_1 121 TILKNLAGSFEAGKATALLGPSGSGKTTLMDVLSNRKTV--GK--IEGEILFGGRTPTKKMLRRLCGYVEQFDTLVGELTVRQMLMYTAELKltTNFTKKDKELRVQEALETLGLTAcadtvIGGTLKRGVSGGQLKRTNIALSLISQPPVIFLDEPTSGLDSFMANEVATVLRELARL-GRTIVCTIHS 305
                  578888889999*********************998887..44..44788999999*****************************9998876226799999**************994443222356789***********************************************95.6666666665 PP

>> TIGR02673  FtsE: cell division ATP-binding protein FtsE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.0      0.28        20      37      87 ..      52     107 ..      36     112 .. 0.72
   2 !   82.5   0.0   9.9e-26   6.9e-24      11     201 ..     116     310 ..     107     324 .. 0.82

  Alignments for each domain:
  == domain 1    score: 2.6 bits;  conditional E-value: 0.28
    TIGR02673  37 sGaGkttllklllgaekpsrGevevagedva.....rlrerelpllRrkigvvfqD 87 
                  s  Gkt  ++l +  ++ ++G++ v+  +v+     + r++++++  r + + f D
  MMETSP1137-20121227|10307_1  52 SEFGKTDXVRLACRSLTKTQGRMCVNEVKVQiekgsSTRKESTAKRSRGLQISFRD 107
                  677******************98888777751111134445555555666666666 PP

  == domain 2    score: 82.5 bits;  conditional E-value: 9.9e-26
    TIGR02673  11 yaagveaLkdvslkiekgeflfltGasGaGkttllklllgaekpsrGevevagedvarlrerelpllRrkigvvfqDfkllkdrtvlenvalalevr...gkkeeeiqkrveevlelvgledkakal.....peelsgGeqqRvaiaRaivnkPelllaDePtGnlDdelserildllkelnkrGttvivathdeelve 201
                   +++ ++Lk++  ++e+g+ + l G+sG+Gkttl+ +l ++++   G+  ++ge +   r+ +  +lRr  g v q   l+ + tv + +  + e++   + ++++ + rv+e+le++gl+  a+++      + +sgG  +R+ ia +++++P+++  DePt  lD+ +++++ ++l+el + G t++ + h  + ++
  MMETSP1137-20121227|10307_1 116 KKQSLTILKNLAGSFEAGKATALLGPSGSGKTTLMDVLSNRKTV--GK--IEGEILFGGRTPTKKMLRRLCGYVEQFDTLVGELTVRQMLMYTAELKlttNFTKKDKELRVQEALETLGLTACADTViggtlKRGVSGGQLKRTNIALSLISQPPVIFLDEPTSGLDSFMANEVATVLRELARLGRTIVCTIHSPTAYA 310
                  5678899*******************************987764..43..4566666666777779*********************9987765554111345677889************999875222225779*********************************************************977655 PP

>> TIGR02315  ABC_phnC: phosphonate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0       4.3     3e+02      37      76 ..      52      91 ..      38     100 .. 0.82
   2 !   83.8   0.0   3.8e-26   2.7e-24      15     233 ..     120     334 ..     103     338 .. 0.83

  Alignments for each domain:
  == domain 1    score: -1.5 bits;  conditional E-value: 4.3
    TIGR02315 37 sGaGkstllrsinrlveissgsillegkevtklkkkelrk 76
                 s  Gk+  +r   r  ++++g++ +++ +v+ +k+++ rk
  MMETSP1137-20121227|10307_1 52 SEFGKTDXVRLACRSLTKTQGRMCVNEVKVQIEKGSSTRK 91
                 5668999999999999999999999999999888777665 PP

  == domain 2    score: 83.8 bits;  conditional E-value: 3.8e-26
    TIGR02315  15 kqalknvnleikkGelvaviGlsGaGkstllrsinrlve..issgsillegkevtklkkkelrklrkkigmifqeynlierltvlenvLsgrlgakstlksllglfseedke.kAlelLervglaelaakra.....dqLsGGqqqRvaiaRalaqqpklilaDEPiasLDpksskqvmdllkrinkekgitvivnlHq.vdlakkyadrivglkageivfdgassel 233
                   ++lkn+  +++ G+ +a++G+sG+Gk+tl+  +++ ++  + +g+il+ g++        +++lr+  g++ q   l+ +ltv +      l ++  lk l + f+++dke +  e+Le +gl++ a++         +sGGq +R  ia +l+ qp +i+ DEP++ LD   +++v  +l+++++  g t+++++H+   +a +  d ++ l++g  +++g+ +++
  MMETSP1137-20121227|10307_1 120 LTILKNLAGSFEAGKATALLGPSGSGKTTLMDVLSNRKTvgKIEGEILFGGRTP------TKKMLRRLCGYVEQFDTLVGELTVRQ-----MLMYTAELK-LTTNFTKKDKElRVQEALETLGLTACADTVIggtlkRGVSGGQLKRTNIALSLISQPPVIFLDEPTSGLDSFMANEVATVLRELAR-LGRTIVCTIHSpTAYAFSCFDAVMMLRDGMTIYEGPQDHI 334
                  56899***************************9986444225666666666554......5678999*******999***999865.....445666776.55667777776256789*******999876522222568*********************************************86.89********8467999999**************998765 PP

>> TIGR03864  PQQ_ABC_ATP: ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.8   0.0   1.8e-26   1.3e-24      16     221 ..     122     336 ..     111     345 .. 0.83

  Alignments for each domain:
  == domain 1    score: 84.8 bits;  conditional E-value: 1.8e-26
    TIGR03864  16 alddvsltvakgefvaLLGpnGaGkstLfslltrLyeak..egeikvaGldlrrapkealarl.GvvfqqstlDldlsveqnlryhaaLh...Glsraeaeerieealarlglaeraeekv.....reLnGGhrrrveiarallhePklLLlDeatvGLDiesraalveevrelvreeglsvLWathlvd..eveaedrlvvlhkGkvlaqGaaaelaa 221
                  +l++++ + + g+ +aLLGp G+Gk+tL+ +l+  ++    egei   G      +k++l+rl G v q  tl  +l+v+q l y a+L+    +++++ e r++eal+ lgl++ a++ +     r ++GG+ +r +ia +l+ +P ++ lDe+t GLD    +++ + +rel+ + g +++ + h       +  d +++l  G+   +G ++++ a
  MMETSP1137-20121227|10307_1 122 ILKNLAGSFEAGKATALLGPSGSGKTTLMDVLSNRKTVGkiEGEILFGGRT---PTKKMLRRLcGYVEQFDTLVGELTVRQMLMYTAELKlttNFTKKDKELRVQEALETLGLTACADTVIggtlkRGVSGGQLKRTNIALSLISQPPVIFLDEPTSGLDSFMANEVATVLRELA-RLGRTIVCTIHSPTayAFSCFDAVMMLRDGMTIYEGPQDHIGA 336
                  67778888999*********************9766543227777777754...44556666559************************8333567889999*************99987654445789*********************************************9.6677788888864411567789999999999999999888765 PP

>> TIGR00972  3a0107s01c2: phosphate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.9   0.0   1.4e-25   9.4e-24      15     230 ..     121     334 ..     109     341 .. 0.85

  Alignments for each domain:
  == domain 1    score: 81.9 bits;  conditional E-value: 1.4e-25
    TIGR00972  15 ealkdvnleikknkvtaliGpsGcGkstllrslnrlndlveevrieGkvllegkdiydkkldvvelrkkvGmvfqkpnpfp.msiydnvayg..lrlkgikdkkeldeiveesLkkaalwdevkdkl..kksalsLsGGqqqrlciaralavePevlLlDePtsaLDpiatekieeliqeLkkk.ytivivthn.mqqaarvsdktaffleGelveegeteqi 230
                  + lk++  ++++ k tal+GpsG+Gk+tl+  l          +ieG++l+ g+  ++k      lr+  G v q  +     ++ + ++y+  l+l+   +kk+ + +v+e+L+  +l     d +   +   ++sGGq +r  ia +l  +P v+ lDePts LD+ +++++  +++eL++   tiv   h+  ++a  + d ++++ +G  + eg+ ++i
  MMETSP1137-20121227|10307_1 121 TILKNLAGSFEAGKATALLGPSGSGKTTLMDVLSN---RKTVGKIEGEILFGGRTPTKK-----MLRRLCGYVEQFDTLVGeLTVRQMLMYTaeLKLTTNFTKKDKELRVQEALETLGLTA-CADTVigGTLKRGVSGGQLKRTNIALSLISQPPVIFLDEPTSGLDSFMANEVATVLRELARLgRTIVCTIHSpTAYAFSCFDAVMMLRDGMTIYEGPQDHI 334
                  4688999999*******************988765...444569*********987766.....89*******99999886589999999984456666678999999**********995.5555412345678**********************************************9876899999998467999************99999988766 PP

>> TIGR03375  type_I_sec_LssB: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.8   0.1   1.1e-25   7.5e-24     448     688 ..      85     334 ..      55     340 .. 0.79

  Alignments for each domain:
  == domain 1    score: 81.8 bits;  conditional E-value: 1.1e-25
    TIGR03375 448 vereeekrllsreklkGeielknvsfkYpeeekaa...LknvslkikpGekvaiiGriGsGKstllklllg..lyepteGsvlldgvdirqidpadlrrnigyvpqdvtLf.yGtlrdNialgap.......aaede..ellraaelaGvtefvkkhpkGldlqiger.GesLSgGQrqavalaRallkdppillLDEPtsalDnsseekllerLkella.dkTlvlvtHrts..lLelvdriivldkGrivadGpkdev 688
                  +  +++k+   +++   +i++++++++ p ++k++   Lkn+  + ++G   a++G  GsGK+tl+ +l++   +   eG++l+ g   r+  ++ lrr  gyv+q  tL    t+r+ +++ a+       + +d+  ++ +a+e+ G+t+ ++       + ig    +++SgGQ +   +a  l+++pp+++LDEPts lD+   +++ + L+el++ ++T+v + H  +    +  d +++l++G  + +Gp+d++
  MMETSP1137-20121227|10307_1  85 KGSSTRKESTAKRSRGLQISFRDLKYSVPLKKKQSltiLKNLAGSFEAGKATALLGPSGSGKTTLMDVLSNrkTVGKIEGEILFGG---RTPTKKMLRRLCGYVEQFDTLVgELTVRQMLMYTAElklttnfTKKDKelRVQEALETLGLTACAD-------TVIGGTlKRGVSGGQLKRTNIALSLISQPPVIFLDEPTSGLDSFMANEVATVLRELARlGRTIVCTIHSPTayAFSCFDAVMMLRDGMTIYEGPQDHI 334
                  4445555555566666699********988777761125677789************************9722567889****999...5566799**********9999834599**9999988333332222333113456666666665554.......55543214679**********************************************99*********8762257889*****************987 PP

>> TIGR00968  3a0106s01: sulfate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.5   0.0     4e-25   2.7e-23      11     210 ..     118     326 ..     112     336 .. 0.83

  Alignments for each domain:
  == domain 1    score: 80.5 bits;  conditional E-value: 4e-25
    TIGR00968  11 GdfqalddvdlevktGslvallGpsGsGkstllrviaGlek..pdsGrilleGrdvtrvkvrdreiGfvfqhyalfkhltvrdniafGleir...kkdkakikakveellelvqleklgdr.....ypsqlsGGqrqrvalaralavepqvllldepfgaldakvrkelrawlrklhdevkvttvfvthd.qeealevadrivvlekGkie 210
                   ++++l+++  + + G+ +allGpsGsGk+tl+ v++  +   + +G+il+ Gr  t+  + +r  G+v q  +l   ltvr+ + +  e++   + +k+ +  +v+e le ++l+  +d          +sGGq +r  +a +l  +p v++ldep + ld+ + +e+ + lr+l  ++  t v   h   + a    d +++l++G  +
  MMETSP1137-20121227|10307_1 118 QSLTILKNLAGSFEAGKATALLGPSGSGKTTLMDVLSNRKTvgKIEGEILFGGRTPTKKML-RRLCGYVEQFDTLVGELTVRQMLMYTAELKlttNFTKKDKELRVQEALETLGLTACADTviggtLKRGVSGGQLKRTNIALSLISQPPVIFLDEPTSGLDSFMANEVATVLRELA-RLGRTIVCTIHSpTAYAFSCFDAVMMLRDGMTI 326
                  5778999999999***********************988762256799******9998665.689**********************999984444455556679**********9988862111156789********************************************96.566677777775256788888888888888655 PP

>> TIGR00960  3a0501s02: type II secretory pathway family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0       4.8   3.4e+02      38      71 ..      52      85 ..      37     114 .. 0.78
   2 !   76.4   0.0   7.7e-24   5.4e-22      15     199 ..     120     307 ..     102     324 .. 0.83

  Alignments for each domain:
  == domain 1    score: -1.4 bits;  conditional E-value: 4.8
    TIGR00960 38 sGaGkstllklilgiekpsaGkirvsgqdltklr 71
                 s  Gk+  ++l +   + ++G++ v++ +++  +
  MMETSP1137-20121227|10307_1 52 SEFGKTDXVRLACRSLTKTQGRMCVNEVKVQIEK 85
                 6678888899999999999999988887775443 PP

  == domain 2    score: 76.4 bits;  conditional E-value: 7.7e-24
    TIGR00960  15 aelaldnvtvkiekGelvflvGhsGaGkstllklilgiekps..aGkirvsgqdltklrdrevpflrrqiGivfqdfkllsdrtvydnvala..lriiGv.kgreieervsaalekvGlkdkaka.....lPvqlsgGeqqrvaiaravvnkPallladePtgnlddelsrdilelleevnraGttvlvathden 199
                   +  l+n++ + e G+ + l G+sG+Gk+tl+ +++++++    +G+i++ g   tk       +lrr  G v q   l+ + tv + ++ +  l++    + ++ e rv++ale++Gl+  a +     l   +sgG+ +r +ia +++++P++++ dePt+ ld+ +++++  +l+e+ r+G t++ + h  +
  MMETSP1137-20121227|10307_1 120 LT-ILKNLAGSFEAGKATALLGPSGSGKTTLMDVLSNRKTVGkiEGEILFGGRTPTK------KMLRRLCGYVEQFDTLVGELTVRQMLMYTaeLKLTTNfTKKDKELRVQEALETLGLTACADTviggtLKRGVSGGQLKRTNIALSLISQPPVIFLDEPTSGLDSFMANEVATVLRELARLGRTIVCTIHSPT 307
                  34.799*****************************9988754225888888865554......68**********************998752266655415677888************998752222267889******************************************************999755 PP

>> TIGR02868  CydC: thiol reductant ABC exporter, CydC subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.2   0.2   2.7e-23   1.9e-21     309     529 ..      78     305 ..      54     306 .. 0.80
   2 ?   -1.5   0.0       2.3   1.6e+02     448     474 ..     350     376 ..     346     379 .. 0.91

  Alignments for each domain:
  == domain 1    score: 74.2 bits;  conditional E-value: 2.7e-23
    TIGR02868 309 evldakvevaeasapaaeaaasekptlelrdlsvsypgaee....vlkgvsldlepGervavvGasGaGKstLlalla..glldplkGevtldgvsvaslsesevrrvvsvlaq.daHlFdttvreNlrlarpdatdeellaaLervgLadwlra..LpdGldtklgeggar.lSGGerqRlalARaLladapvllLDEPtehLDaeteeelledLl.aaeegrtvvlvthr 529
                  ev  +  e++ ++ ++  a  s   ++ +rdl++s p +++    +lk++    e+G+ +a++G+sG+GK+tL+ +l   + +   +Ge++  g  +++   + +rr+  +++q d  + + tvr+ l+  ++     + ++  ++ + ++ l+   L   +dt++g++ +r +SGG+ +R  +A  L+++ pv+ LDEPt +LD   ++e+ + L+  a  grt+v   h+
  MMETSP1137-20121227|10307_1  78 EVKVQI-EKGSSTRKESTAKRSRGLQISFRDLKYSVPLKKKqsltILKNLAGSFEAGKATALLGPSGSGKTTLMDVLSnrKTVGKIEGEILFGGRTPTK---KMLRRLCGYVEQfDTLVGELTVRQMLMYTAELKLTTNFTKKDKELRVQEALETlgLTACADTVIGGTLKRgVSGGQLKRTNIALSLISQPPVIFLDEPTSGLDSFMANEVATVLReLARLGRTIVCTIHS 305
                  443333.3333344444444458999*******99874432224689999***************************7324677889*******66665...89**********66677789********9999999999999999999999998557889999**9987655*******************************************9667788888877776 PP

  == domain 2    score: -1.5 bits;  conditional E-value: 2.3
    TIGR02868 448 vgLadwlraLpdGldtklgeggarlSG 474
                  v L +wl +L +G ++ + ++ga  S+
  MMETSP1137-20121227|10307_1 350 VSLPEWLVDLTSGSQSAVMQTGAVYSA 376
                  7899******************99986 PP

>> TIGR03873  F420-0_ABC_ATP: proposed F420-0 ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.9   0.0   1.5e-22     1e-20      10     223 ..     116     333 ..     107     337 .. 0.83

  Alignments for each domain:
  == domain 1    score: 71.9 bits;  conditional E-value: 1.5e-22
    TIGR03873  10 raggrlivddvdvtaPaGaltgllGPnGsGkstllrllaG..llapdaGevdlagadlkalsrrararrvalveqdsdaevplsvrdvvalGriPhrslfaadsdedaev.vdralarvelssladrdl.....stlsGGerqrvhlaralaqePklllldePtnhldvsaqlellalvrelaaegvtvvvalhdln.laasvcdhvvvldgGrvvaaGppae 223
                  ++++ +i++++  ++ aG+ t+llGP GsGk+tl+ +l+    +   +Ge+ ++g      +++   r    veq  +   +l+vr++++   +  + l +  +++d+e+ v++al + +l++ ad  +       +sGG+ +r+++a +l  +P +++ldePt  ld     e+ +++rela  g t+v ++h  + +a s  d v++l  G  +  Gp  +
  MMETSP1137-20121227|10307_1 116 KKQSLTILKNLAGSFEAGKATALLGPSGSGKTTLMDVLSNrkTVGKIEGEILFGGRT---PTKKMLRRLCGYVEQFDTLVGELTVRQMLMY--TAELKLTTNFTKKDKELrVQEALETLGLTACADTVIggtlkRGVSGGQLKRTNIALSLISQPPVIFLDEPTSGLDSFMANEVATVLRELARLGRTIVCTIHSPTaYAFSCFDAVMMLRDGMTIYEGPQDH 333
                  5677899999999*************************9722455678999999964...444444456789****9999******98665..566667777777888875899***********987632222357*********************************************************9762677777*********9999998766 PP

>> TIGR02211  LolD_lipo_ex: lipoprotein releasing system, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.5   0.0   2.1e-22   1.5e-20      13     217 ..     115     323 ..     106     327 .. 0.81

  Alignments for each domain:
  == domain 1    score: 71.5 bits;  conditional E-value: 2.1e-22
    TIGR02211  13 egkleievlkgvsleiekgelvaivGssGsGkstllhllggldkpt..sGevllkGkelsklssneraklrnkklGfiyqfhhlladftalenvamPl...liskkskkeakerakellekvglekrinkkps.....elsGGerqrvaiaralvnkPklvladePtgnldkktakkifelllelnkekntallvvthdlela.kkldrvlelkdg 217
                  ++k+++++lk++  + e+g+ +a++G sGsGk+tl+ +l+   +    +Ge+l+ G++        +  lr +  G++ qf  l+ ++t+ + ++  +   l ++  kk+ + r +e le +gl   ++   +      +sGG+ +r  ia +l+++P +++ dePt+ ld+  a+++ ++l+el +  +t +  +   + +a  ++d v+ l+dg
  MMETSP1137-20121227|10307_1 115 KKKQSLTILKNLAGSFEAGKATALLGPSGSGKTTLMDVLSNRKTVGkiEGEILFGGRT------PTKKMLR-RLCGYVEQFDTLVGELTVRQMLMYTAelkLTTNFTKKDKELRVQEALETLGLTACADTVIGgtlkrGVSGGQLKRTNIALSLISQPPVIFLDEPTSGLDSFMANEVATVLRELARLGRTIVCTIHSPTAYAfSCFDAVMMLRDG 323
                  568899**********************************876543125666666664......4444555.678**************9988887643337889999****************9998876442222268*********************************************9987775544433333332678888888887 PP

>> TIGR03258  PhnT: 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.9   0.0     3e-22   2.1e-20      20     223 ..     119     330 ..     108     340 .. 0.82

  Alignments for each domain:
  == domain 1    score: 70.9 bits;  conditional E-value: 3e-22
    TIGR03258  20 arvvlddlsleieaGellallGksGsGkttllravaGfvkadG...GrllvadrdlthlppykrnlallvqnyalfphlkveenvafGlr...arkqskaliaervadalklvqlsdaaa.....rlpaqlsGGqqqrvalaralvvrpdvllldeplsaldaqlrasvveelkalhrelpel..tvlyvthdrde.alvladkillmkeGslialGe 223
                  + ++l++l+   eaG+  allG+sGsGkttl+ +++   k+ G   G +l ++r  t+    +r  + + q  +l   l+v + + +      + + +k + + rv +al +++l+  a       l   +sGGq +r  +a +l+ +p v++ldep s ld+ +     +e++++ rel  l  t+++  h  +  a+   d ++++++G  i  G 
  MMETSP1137-20121227|10307_1 119 SLTILKNLAGSFEAGKATALLGPSGSGKTTLMDVLSNR-KTVGkieGEILFGGRTPTKK-MLRRLCGYVEQFDTLVGELTVRQMLMYTAElklTTNFTKKDKELRVQEALETLGLTACADtviggTLKRGVSGGQLKRTNIALSLISQPPVIFLDEPTSGLDSFMA----NEVATVLRELARLgrTIVCTIHSPTAyAFSCFDAVMMLRDGMTIYEGP 330
                  5689***************************9988764.4555566********99875.568888999999***********999875411234678999999**********9876651112267899********************************8755....5555555555555449****99976439999**********9998875 PP

>> TIGR03771  anch_rpt_ABC: anchored repeat-type ABC transporter, ATP-binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0       5.7   3.9e+02     143     176 ..       9      42 ..       4      48 .. 0.84
   2 !   70.0   0.0   7.4e-22   5.1e-20       4     190 ..     131     324 ..     129     340 .. 0.81

  Alignments for each domain:
  == domain 1    score: -1.6 bits;  conditional E-value: 5.7
    TIGR03771 143 Gldlpsqellvelfeelagegtailmtthdlaea 176
                  G ++p+  +l e++ +l++  ++ +m t ++  a
  MMETSP1137-20121227|10307_1   9 GRQVPAGVSLPEFLVDLTAGSQSSVMQTFEVYSA 42 
                  66789999999****************9998766 PP

  == domain 2    score: 70.0 bits;  conditional E-value: 7.4e-22
    TIGR03771   4 dkGellgllGpnGaGkttllrailg..likvakGsvkvagkssrkg..rreiGyvpqrhefawdfpidveqtvlsGragliGllrrpkkadfaavadalervklteladrpvGe.....lsGGqrqrvlvaralavkpslllldepftGldlpsqellvelfeelagegtailmtthdl.aeavatcdrvvllngrv 190
                  ++G+  +llGp G+Gkttl+  +     + + +G++  +g++++k   rr  Gyv q   +  +  + v+q+++     ++     +kk+    v++ale+  lt  ad  +G      +sGGq +r  +a +l  +p +++ldep +Gld    ++++ +++ela  g++i+ t h   a a ++ d v++l   +
  MMETSP1137-20121227|10307_1 131 EAGKATALLGPSGSGKTTLMDVLSNrkTVGKIEGEILFGGRTPTKKmlRRLCGYVEQFDTLVGE--LTVRQMLMYTAELKLTT-NFTKKDKELRVQEALETLGLTACADTVIGGtlkrgVSGGQLKRTNIALSLISQPPVIFLDEPTSGLDSFMANEVATVLRELARLGRTIVCTIHSPtAYAFSCFDAVMMLRDGM 324
                  689999**************8775422577789********98876235779*****9998876..67899999765555543.4466777789******************95333447*********************************************************85155777778887775444 PP

>> TIGR03410  urea_trans_UrtE: urea ABC transporter, ATP-binding protein UrtE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0       9.1   6.3e+02      37      70 ..      54      87 ..      40     103 .. 0.77
   2 !   70.1   0.0   5.5e-22   3.8e-20      14     218 ..     121     333 ..     112     337 .. 0.85

  Alignments for each domain:
  == domain 1    score: -2.6 bits;  conditional E-value: 9.1
    TIGR03410 37 vGkttllkalvgllkvksGeielegeditklkpe 70
                  Gkt  ++ ++  l++++G++ +++ +++  k +
  MMETSP1137-20121227|10307_1 54 FGKTDXVRLACRSLTKTQGRMCVNEVKVQIEKGS 87
                 6888888888888889999988888877765544 PP

  == domain 2    score: 70.1 bits;  conditional E-value: 5.5e-22
    TIGR03410  14 evlrdvslevekgevvavlGrngvGkttllkalvgllk..vksGeielegeditklkpeervkaGiayvpqGreifpkltveenlelglealkkk......ekkipeeiyelFPvlkemlkRrgGdL....sGGqqqqlaiaRaLvtePklllLDePteGiqPsiikeiekvikelakekdlaillveqvldfaleladrylvlerGevvaegekee 218
                  ++l+++  + e+g+ +a+lG  g Gkttl+  l    +  + +Gei + g+    +++++  ++  +yv q  +++ +ltv+  l+ ++e + ++      ++   +e++e   +     +  gG L    sGGq +   ia +L+++P ++ LDePt G+   + +e+++v++ela+ +   +  +     +a ++ d +++l  G ++ eg +++
  MMETSP1137-20121227|10307_1 121 TILKNLAGSFEAGKATALLGPSGSGKTTLMDVLSNRKTvgKIEGEILFGGR----TPTKKMLRRLCGYVEQFDTLVGELTVRQMLMYTAELKLTTnftkkdKELRVQEALETLGLTACADTVIGGTLkrgvSGGQLKRTNIALSLISQPPVIFLDEPTSGLDSFMANEVATVLRELARLGRTIVCTIHSPTAYAFSCFDAVMMLRDGMTIYEGPQDH 333
                  69999999***********************99876541145677777775....6788899999*****************99887766543332332224445688888888888888999999777779**********************************************9999999999**********************9998876 PP

>> TIGR01189  ccmA: heme ABC exporter, ATP-binding protein CcmA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.5   0.0   4.5e-22   3.1e-20      10     187 ..     117     306 ..     111     311 .. 0.84

  Alignments for each domain:
  == domain 1    score: 70.5 bits;  conditional E-value: 4.5e-22
    TIGR01189  10 RgervlleglsfelaaGealvveGpnGiGKttLLRilaGLlk..pesGevelndkelaeqrdelaeellylgHldglKaeLsalEnLkfyaallq.......seqktveealekvgLsgledlpv.....aqLsAGqkrRlalarLllskaplWiLDEPttalDkegvellaellaaHlargGivllathqd 187
                  ++  ++l++l  ++ aG+a ++ Gp G+GKttL+ +l+   +    +Ge+ + +++ +++   l++ + y+   d+l +eL+++  L + a+l         ++++ v+eale++gL++++d+++     + +s Gq +R  +a  l+s+ p+  LDEPt  lD    + +a++l++ ++ g +++ + h +
  MMETSP1137-20121227|10307_1 117 KQSLTILKNLAGSFEAGKATALLGPSGSGKTTLMDVLSNRKTvgKIEGEILFGGRTPTKK--MLRRLCGYVEQFDTLVGELTVRQMLMYTAELKLttnftkkDKELRVQEALETLGLTACADTVIggtlkRGVSGGQLKRTNIALSLISQPPVIFLDEPTSGLDSFMANEVATVLRELARLGRTIVCTIHSP 306
                  567899********************************876522678*****97774443..5779*******************9999988755445554334449**************998732222568*******************************************9888888888888876 PP

>> TIGR01166  cbiO: cobalt ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.2   0.3   9.7e-22   6.8e-20       6     185 ..     121     304 ..     117     307 .. 0.77

  Alignments for each domain:
  == domain 1    score: 69.2 bits;  conditional E-value: 9.7e-22
    TIGR01166   6 evlkglnlavergevlallGanGaGkstlllhlnGllrPksGkvlldGeeldysrkgllelrkkvalvlqdpddqlfaadvdedvafgp.lnlG..lseaeverrvrealaavdisgleerpt.....hllsgGekkrvaiagavalrpdvllldePtagldpaGaeqlleilrklreeGktvvisth 185
                   +lk+l  ++e g+++allG+ G+Gk+tl+  l+   r + Gk+  +Ge l  +r    ++ +++   + + d  +   +v + + ++  l l    ++++ e rv+eal++++++  ++  +     + +sgG+ kr+ ia  ++ +p v++ldePt+gld+  a++++++lr+l   G+t+v + h
  MMETSP1137-20121227|10307_1 121 TILKNLAGSFEAGKATALLGPSGSGKTTLMDVLSN--RKTVGKI--EGEILFGGRTPTKKMLRRLCGYVEQFDTLVGELTVRQMLMYTAeLKLTtnFTKKDKELRVQEALETLGLTACADTVIggtlkRGVSGGQLKRTNIALSLISQPPVIFLDEPTSGLDSFMANEVATVLRELARLGRTIVCTIH 304
                  689999999************************96..4455543..45555555555555544444445556777777777777776532333311345556679************99986532222679*****************************************************9988 PP

>> TIGR03265  PhnT2: putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.4   0.1   9.4e-22   6.6e-20      12     194 ..     115     305 ..     106     333 .. 0.82

  Alignments for each domain:
  == domain 1    score: 69.4 bits;  conditional E-value: 9.4e-22
    TIGR03265  12 kefeaftalkdislsvkkgelvclLGPsGCGkttLLriiaGLek..qdaGaillggrditrlppqkrdyGivfqsYaLfPnltvaeniayGLk...nkklkreevaerveelLelvglsgseekyPg.....qlsGGqqqrvaLaralalsPglLLLDePlsaLDakvrekLreelkklqrklgvttimvthd 194
                  k+ ++ t+lk++  s ++g   +lLGPsG GkttL+ +++   +  + +G+il ggr  t+    +r  G v q  +L  +ltv++ + y  +   + + ++++ + rv+e+Le++gl+  ++   g      +sGGq +r  +a +l+ +P +++LDeP s LD+ + +++ + l++l  +lg t +   h 
  MMETSP1137-20121227|10307_1 115 KKKQSLTILKNLAGSFEAGKATALLGPSGSGKTTLMDVLSNRKTvgKIEGEILFGGRTPTKK-MLRRLCGYVEQFDTLVGELTVRQMLMYTAElklTTNFTKKDKELRVQEALETLGLTACADTVIGgtlkrGVSGGQLKRTNIALSLISQPPVIFLDEPTSGLDSFMANEVATVLRELA-RLGRTIVCTIHS 305
                  55567899999999**************************9887224579999***998876.56899**********************86521244567899999************988765432222268*******************************************996.688777776665 PP

>> TIGR01288  nodI: nodulation ABC transporter NodI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.3   0.1   8.4e-22   5.8e-20      19     220 ..     122     332 ..     112     346 .. 0.81

  Alignments for each domain:
  == domain 1    score: 69.3 bits;  conditional E-value: 8.4e-22
    TIGR01288  19 vvndlsftiaagecfgllgpngagkstiarlvlglispdegki...tvlgepvpararlarakigvvpqfdnldreftvrenllvfgryfglst....reieevipsllefarleskadvrva.....dlsggmkrrltlaralindpqllildepttgldpharhliwerlrsllargktilltthlmeeaerlc.drlcvleagrkiaegrpd 220
                  ++++l+ +  ag+   llgp g+gk+t+  ++    +  +gki    ++g + p++    r   g v qfd+l  e+tvr+  l++   ++l+t    ++ e  +   le   l + ad+ +       +sgg  +r  +a +li +p ++ ldept+gld      +   lr l  +g+ti+ t h        c d + +l  g+ i eg  d
  MMETSP1137-20121227|10307_1 122 ILKNLAGSFEAGKATALLGPSGSGKTTLMDVLSNRKT--VGKIegeILFGGRTPTKKM-LRRLCGYVEQFDTLVGELTVRQM-LMYTAELKLTTnftkKDKELRVQEALETLGLTACADTVIGgtlkrGVSGGQLKRTNIALSLISQPPVIFLDEPTSGLDSFMANEVATVLRELARLGRTIVCTIHSPTAYAFSCfDAVMMLRDGMTIYEGPQD 332
                  7788999999******************998876543..4444221256788888865.56679****************85.5677777776522225778899**************988532222589********************************************************977655555499999********99654 PP

>> TIGR00958  3a01208: antigen peptide transporter 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.1   0.0   3.1e-21   2.1e-19     475     672 ..      98     304 ..      86     333 .. 0.81

  Alignments for each domain:
  == domain 1    score: 67.1 bits;  conditional E-value: 3.1e-21
    TIGR00958 475 leG.kveFqdVsFsYPsrpdk..pvlkdLtftlepGevvalVGPsGsGKStvaallenlYq..PtgGqvllDgkplkeydhkylhrkvalVgqEPvlfsg.svreNiaYGltktedeevtaaakaanahdFise..lekgydtevgekGs.qlsgGqkqriAiARALvrkPrvLiLDeAtSALDa....eveqllqesksaksrtvlliah 672
                   +G ++ F+d ++s P + ++   +lk+L+ + e+G+++al GPsGsGK t + +l n       +G++l  g+  +    k l+r  + V+q   l +  +vr+ + Y  + +   + t   k+  +++ ++   l+   dt +g + +  +sgGq +r  iA  L+ +P v+ LDe tS LD+    ev ++l e   + +rt++   h
  MMETSP1137-20121227|10307_1  98 SRGlQISFRDLKYSVPLKKKQslTILKNLAGSFEAGKATALLGPSGSGKTTLMDVLSNRKTvgKIEGEILFGGRTPT---KKMLRRLCGYVEQFDTLVGElTVRQMLMYTAELKLTTNFTKKDKELRVQEALETlgLTACADTVIGGTLKrGVSGGQLKRTNIALSLISQPPVIFLDEPTSGLDSfmanEVATVLREL-ARLGRTIVCTIH 304
                  555369**********876652279*******************************986541156899999997654...589**********887776449*********9999**************999861156779****98754169********************************8765555555554.456778777666 PP

>> TIGR03740  galliderm_ABC: lantibiotic protection ABC transporter, ATP-binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.5   0.0     4e-21   2.7e-19      10     206 ..     117     329 ..     110     337 .. 0.80

  Alignments for each domain:
  == domain 1    score: 67.5 bits;  conditional E-value: 4e-21
    TIGR03740  10 fkkqavvnnvslkvkknsvygllGpnGaGkstllklltG..llrktsGeilldgrewtrkdlkkiGslies.Palyenltare......nlkvrtlllgl.pesrieevlkivdlentekkka.....kqfslGmkqrlGiaiallnkPkllildePtnGldPlGiqelreliksfpekGitvilsshilseve.lladhiGiiseGklkyek 206
                   +  ++++n++ + +  +  +llGp G+Gk+tl+ +l+    + k +Geil+ gr+ t+k+l+ +   +e+  +l ++lt r+      +lk++t   +  +e r++e l++++l+            +  s G  +r  ia++l+ +P ++ ldePt Gld +  +e+  +++ + + G t++ + h  +       d + ++++G+  ye+
  MMETSP1137-20121227|10307_1 117 KQSLTILKNLAGSFEAGKATALLGPSGSGKTTLMDVLSNrkTVGKIEGEILFGGRTPTKKMLRRLCGYVEQfDTLVGELTVRQmlmytaELKLTTNFTKKdKELRVQEALETLGLTACADTVIggtlkRGVSGGQLKRTNIALSLISQPPVIFLDEPTSGLDSFMANEVATVLRELARLGRTIVCTIHSPTAYAfSCFDAVMMLRDGMTIYEG 329
                  455678999999999**********************963378899*****************998888763567888888762111115566666554414679**********987665431111156789999************************************************99997655431567888888888888876 PP

>> TIGR01187  potA: polyamine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.4   0.0   3.5e-21   2.4e-19       1     180 [.     138     326 ..     138     342 .. 0.84

  Alignments for each domain:
  == domain 1    score: 67.4 bits;  conditional E-value: 3.5e-21
    TIGR01187   1 lLGpsGsGkttlLrllaGleeld..sGkilldgedvtevpaekrsvnvvfqsyaLfPhmtveenvafg..Lkmr.kvpkaeikervkeaLelvqleefakrkp.....sqlsGGqrqrvalaravvkkPkiLLlDeplsaLDkkLrdqmqlelkalqeklGitvvlvthDq.eealtmsdriavlrkGkia 180
                  lLGpsGsGkttl+ +l+  +++   +G+il++g   t+    +r  + v q   L   +tv + + +   Lk+  +  k++ + rv+eaLe+  l+  a+  +       +sGGq +r  +a +++ +P +++lDep s LD  + +++ + l++l  +lG t+v   h     a++  d + +lr+G  +
  MMETSP1137-20121227|10307_1 138 LLGPSGSGKTTLMDVLSNRKTVGkiEGEILFGGRTPTKK-MLRRLCGYVEQFDTLVGELTVRQMLMYTaeLKLTtNFTKKDKELRVQEALETLGLTACADTVIggtlkRGVSGGQLKRTNIALSLISQPPVIFLDEPTSGLDSFMANEVATVLRELA-RLGRTIVCTIHSPtAYAFSCFDAVMMLRDGMTI 326
                  8****************999986337*******988875.57899**********************73356542457788889*************99987633222579********************************99999999999986.6*******9998515689999999999999644 PP

>> TIGR02769  nickel_nikE: nickel import ATP-binding protein NikE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.1   0.0   5.1e-21   3.5e-19      18     233 ..     114     329 ..     102     351 .. 0.79

  Alignments for each domain:
  == domain 1    score: 67.1 bits;  conditional E-value: 5.1e-21
    TIGR02769  18 lgkkqrkavldnvslsleeGetvallGrsGaGkstlarlllGlekPakGevsfrGqdlakldrkqrkafrrdvqlvfqdsisavnprksvreii..gePlrhltsldeserkariaellelvelrs..evl..dklPrqlsGGqlqriniaralavePklivldeavsnldlvlqasilellkklkqefGlaylfithd.lrlvqkfaqrvlvldeGqiveei 233
                  l+kkq  ++l+n+  s e+G++ allG sG+Gk+tl  +l      + G++  +G+ l    + ++k +rr    v q    ++    +vr+++  +  l+  t++ + +++ r++e le+++l +  +++    l r +sGGql+r nia +l  +P +i lde  s ld  +  ++   l++l +  G +++   h     + +  + v++l +G  + e 
  MMETSP1137-20121227|10307_1 114 LKKKQSLTILKNLAGSFEAGKATALLGPSGSGKTTLMDVLSNR--KTVGKI--EGEILFGGRTPTKKMLRRLCGYVEQ--FDTLVGELTVRQMLmyTAELKLTTNFTKKDKELRVQEALETLGLTAcaDTVigGTLKRGVSGGQLKRTNIALSLISQPPVIFLDEPTSGLDSFMANEVATVLRELAR-LGRTIVCTIHSpTAYAFSCFDAVMMLRDGMTIYEG 329
                  6799**********************************99754..444544..3555555556677889999888866..556667778887762245699999********************862222222578999**********************************************65.56666655555144555666888899998877665 PP

>> TIGR02142  modC_ABC: molybdate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0       9.1   6.3e+02      29      62 ..      49      82 ..      37     109 .. 0.69
   2 !   65.7   0.0   1.4e-20   9.4e-19      17     219 ..     127     334 ..     110     349 .. 0.81

  Alignments for each domain:
  == domain 1    score: -2.8 bits;  conditional E-value: 9.1
    TIGR02142 29 FGrsGsGktslirliaGLtrpdegeivldgevlq 62
                 +  s  Gkt  +rl    ++ ++g++ +++  +q
  MMETSP1137-20121227|10307_1 49 YADSEFGKTDXVRLACRSLTKTQGRMCVNEVKVQ 82
                 5678889999999988888888899999886554 PP

  == domain 2    score: 65.7 bits;  conditional E-value: 1.4e-20
    TIGR02142  17 dlelpgkgvtalFGrsGsGktslirliaGLtrpdegeivldgevlqdsrkkiilppekRrvgyvFqeArLFpHlsvrenLrYGl.....kraraeerriseekvielLgiehLleR.....lpgkLsGGekqRvaigRAlLssPeLLlmDePLaaLDekrkkeilPyLerlsaelkiPilyvsHsldeva.rladrvvvledGrvkaagkleev 219
                  + + ++   tal G sGsGkt+l+ +++   r + g+i  +ge+l+ +r   +  + +R  gyv q  +L   l+vr+ L Y       ++ + ++++++ ++ +e Lg+    +      l + +sGG  +R  i+  l+s+P ++ +DeP + LD+   +e+   L++l++ l   i+   Hs +  a    d v++l+dG    +g+ +++
  MMETSP1137-20121227|10307_1 127 AGSFEAGKATALLGPSGSGKTTLMDVLS--NRKTVGKI--EGEILFGGRT-PTKKMLRRLCGYVEQFDTLVGELTVRQMLMYTAelkltTNFTKKDKELRVQEALETLGLTACADTviggtLKRGVSGGQLKRTNIALSLISQPPVIFLDEPTSGLDSFMANEVATVLRELAR-LGRTIVCTIHSPTAYAfSCFDAVMMLRDGMTIYEGPQDHI 334
                  456677789******************9..57788876..7*****9998.4556778999*********************8622222455678889999********98766541111145679*********************************************86.666788888999887625779*******998888887766 PP

>> TIGR02203  MsbA_lipidA: lipid A export permease/ATP-binding protein MsbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0       3.1   2.1e+02     369     398 ..      53      82 ..      50      92 .. 0.85
   2 !   65.1   0.0   1.4e-20   9.4e-19     324     551 ..      94     330 ..      63     335 .. 0.78

  Alignments for each domain:
  == domain 1    score: -2.1 bits;  conditional E-value: 3.1
    TIGR02203 369 GsGkstlvnllpRFyepdsGeillDgvdla 398
                    Gk+  v+l  R + +++G++++++v+++
  MMETSP1137-20121227|10307_1  53 EFGKTDXVRLACRSLTKTQGRMCVNEVKVQ 82 
                  569*********************999887 PP

  == domain 2    score: 65.1 bits;  conditional E-value: 1.4e-20
    TIGR02203 324 alervrG.kvefrnvtfrypgddr...ealdsislkveaGevvalvGrsGsGkstlvnllp..RFyepdsGeillDgvdladlkLasLRrqvalvsqdvvLF.ddtiaenvaYgeleevdeaeveealaaaylkdlvdkl..peGldtevGengsk.LsGGqRqRlaiaRallkdaPiLiLDeatsaLDneseRlvqaaLerlmk.gRttlviahRLst..iekaDrivvlddGkiverGt 551
                  + +r rG +++fr++++  p +++    +l+++  + eaG+ +al G+sGsGk+tl+++l+  + + + +Geil+ g        + LRr   +v q  +L  + t+ + + Y+++ +++++   +  ++  +++ +++l      dt +G    + +sGGq +R  ia +l+ + P++ LDe ts LD+    +v   L +l + gRt +   h  +       D +++l dG  + +G+
  MMETSP1137-20121227|10307_1  94 TAKRSRGlQISFRDLKYSVPLKKKqslTILKNLAGSFEAGKATALLGPSGSGKTTLMDVLSnrKTVGKIEGEILFGGRTPT---KKMLRRLCGYVEQFDTLVgELTVRQMLMYTAELKLTTN-FTKKDKELRVQEALETLglTACADTVIGGTLKRgVSGGQLKRTNIALSLISQPPVIFLDEPTSGLDSFMANEVATVLRELARlGRTIVCTIHSPTAyaFSCFDAVMMLRDGMTIYEGP 330
                  456788867******9999865551115678888999**********************97435788999*******8755...56788888999996666615699*******99666554.444455666677776651166789***98765549*********************************************98577777777876641145668888888888888876 PP

>> TIGR03005  ectoine_ehuA: ectoine/hydroxyectoine ABC transporter, ATP-binding protein EhuA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.5   0.1   2.6e-20   1.8e-18       8     234 ..     115     334 ..     108     341 .. 0.82

  Alignments for each domain:
  == domain 1    score: 64.5 bits;  conditional E-value: 2.6e-20
    TIGR03005   8 krfgeltvldglelevaaGekvaliGpsGsGkstilrilmtletideGsikvegeqlyhmkgrkGklvpadekhlrkvrekiGmvfqsfnlfphktvldnvte.apv.lvkGvaraeaekravelldmvGladkadal.....paqlsGGqkqrvaiaralalrpkvllfdevtsaldpelveevlnvlrrlasetdltmllvthemgfarefadrvlffdkGkiveeGkpdei 234
                  k+ ++lt+l++l  + +aG++ al+GpsGsGk+t++ +l   +t+     k+ege+l+  +          +k    +r   G v q   l    tv + ++  a + l+   ++ + e r  e l+ +Gl++ ad++        +sGGq +r  ia +l  +p v+++de+ts ld  + +ev +vlr+la      +  +     +a    d v+++  G  + eG  d+i
  MMETSP1137-20121227|10307_1 115 KKKQSLTILKNLAGSFEAGKATALLGPSGSGKTTLMDVLSNRKTVG----KIEGEILFGGRTP-------TKKM---LRRLCGYVEQFDTLVGELTVRQMLMYtAELkLTTNFTKKDKELRVQEALETLGLTACADTViggtlKRGVSGGQLKRTNIALSLISQPPVIFLDEPTSGLDSFMANEVATVLRELARLGRTIVCTIHSPTAYAFSCFDAVMMLRDGMTIYEGPQDHI 334
                  67789**********************************9877764....6899999865522.......2333...5666788888888888888888765414441466788999999************999975222115679**********************************************987766666666789999999****9999999988877765 PP

>> TIGR02770  nickel_nikD: nickel import ATP-binding protein NikD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.6   0.0   1.1e-19   7.3e-18       8     210 ..     129     331 ..     122     339 .. 0.77

  Alignments for each domain:
  == domain 1    score: 62.6 bits;  conditional E-value: 1.1e-19
    TIGR02770   8 slkrgkvlalvGesGsGksltalailglldkeltktsGeilldgkelaalalrgreialilqnPrsafnPlltikeqllet..lkalekls.kqakelivealeavgLeeaee.vl.kkypfelsGGmlqRvmialallleaplliaDePttdlDvvvqaevLklleelrekrglgillithDlgvvaeladevavmekGkivergtv 210
                  s   gk +al+G sGsGk++  + +l    k + k +Geil+ g+  ++  lr r ++++ q   +++   lt+++ l+ t  lk +++++ k+ + ++ eale  gL+  +  v+  +    +sGG l+R  ial+l++++p+++ DePt+ lD  ++ ev   l+el +   + +  i    +    + d v+++++G  + +g+ 
  MMETSP1137-20121227|10307_1 129 SFEAGKATALLGPSGSGKTTL-MDVLSNR-KTVGKIEGEILFGGRTPTKKMLR-RLCGYVEQ--FDTLVGELTVRQMLMYTaeLKLTTNFTkKDKELRVQEALETLGLTACADtVIgGTLKRGVSGGQLKRTNIALSLISQPPVIFLDEPTSGLDSFMANEVATVLRELARLGRTIVCTIHSPTAYAFSCFDAVMMLRDGMTIYEGPQ 331
                  67889*************864.4444433.367899********998877766.67888877..6777788888888887722455566663444556889*******987651552467788**********************************************987665555555555556689999999999988877765 PP

>> TIGR03522  GldA_ABC_ATP: gliding motility-associated ABC transporter ATP-binding subunit GldA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.5   0.0   1.4e-19   9.7e-18      18     206 ..     123     321 ..     112     340 .. 0.78

  Alignments for each domain:
  == domain 1    score: 62.5 bits;  conditional E-value: 1.4e-19
    TIGR03522  18 ldevsfeaekGeivGflGPnGaGkstlmkiltgy..lkadsGsvavagedvlknslevrkniGylPehnPlyldlyvreylefsaalyklkg...rklkkrveelielvGlkaeqhkkiga.....lskGyrqrvGlakallhdPkvlildePttGldPnqlveirevikeiak.dktvilsthimqevealc.drviiin 206
                  l++++ + e G+ + +lGP G+Gk+tlm +l+    +    G +   g   +   +  r+  Gy+ + + l  +l vr+ l ++a+l   ++   + ++ rv+e +e  Gl+a +   ig      +s G  +r  +a +l+ +P v+ ldePt+Gld     e+  v++e+a+  +t++ + h        c d v+++ 
  MMETSP1137-20121227|10307_1 123 LKNLAGSFEAGKATALLGPSGSGKTTLMDVLSNRktVGKIEGEILFGGRTPT--KKMLRRLCGYVEQFDTLVGELTVRQMLMYTAELKLTTNftkKDKELRVQEALETLGLTACADTVIGGtlkrgVSGGQLKRTNIALSLISQPPVIFLDEPTSGLDSFMANEVATVLRELARlGRTIVCTIHSPTAYAFSCfDAVMMLR 321
                  566666778999*******************975114455677777776555..46689***************************975554110455569***************99974322236778889***************************************98457888887865555544534455555 PP

>> TIGR02324  CP_lyasePhnL: phosphonate C-P lyase system protein PhnL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.7   0.0     2e-19   1.4e-17      11     209 ..     112     306 ..     102     319 .. 0.81

  Alignments for each domain:
  == domain 1    score: 61.7 bits;  conditional E-value: 2e-19
    TIGR02324  11 filhqqgGvklpvlkevsleveaGelvalsGksGaGkstllkslyanYlpesgrilvrhegeivdlvkaserevlevRrktigyvsqfLrviPRvsalevvaepl...lelGvereearakakellarlniperLWslaPatf....sGGekqRvniaraliadrPiLLLdePtasLdaanrkvvvelikeakargaaligifhde 209
                    l ++   +l +lk++  + eaG+ +al G+sG+Gk tl+ +l +       + + + egei+   +   +++l  R +  gyv qf   +  ++ +++++ ++   l++ ++++  + +++e+l+ l ++    ++   t     sGG  +R nia +li++ P++ LdePt+ Ld+   + v  +++e+ + g +++  +h  
  MMETSP1137-20121227|10307_1 112 VPLKKK--QSLTILKNLAGSFEAGKATALLGPSGSGKTTLMDVLSNR------KTVGKIEGEILFGGRTPTKKML--R-RLCGYVEQFDTLVGELTVRQMLMYTAelkLTTNFTKKDKELRVQEALETLGLTACADTVIGGTLkrgvSGGQLKRTNIALSLISQPPVIFLDEPTSGLDSFMANEVATVLRELARLGRTIVCTIHSP 306
                  555555..478999***************************988543......3344568999944444455554..4.689***************99987554212567788888999*********999887777766643333*******************************************************9975 PP

>> TIGR03411  urea_trans_UrtD: urea ABC transporter, ATP-binding protein UrtD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.8   0.0   2.3e-19   1.6e-17      15     229 ..     120     334 ..     114     340 .. 0.81

  Alignments for each domain:
  == domain 1    score: 61.8 bits;  conditional E-value: 2.3e-19
    TIGR03411  15 fkalndlslsveegelrviiGpnGaGkttllDvitGktr..pdeGsvlfkgkdltklkeaeiarlGigRkfqkpsvfeeltvlenlelalkadksvlallfarlskeekerieevleligLeekadkkag.lL....shGqkqwLeigmllvqepkllllDePvaGmtdeetektaellkelak.ersvvv.vehDmefvrelaekvtvlheGkvlaeGsldev 229
                  ++ l++l+ s e+g+  +++Gp G+Gkttl+Dv++ +      eG++lf g+     +++++ r   g   q  ++  eltv++ l+ +++   ++++++   ++k+++ r++e+le++gL++ ad+  g +L    s Gq ++ +i++ l+ +p +++lDeP++G+ +   +++a +l+ela+  r++v  +     +  +  + v +l +G ++ eG  d++
  MMETSP1137-20121227|10307_1 120 LTILKNLAGSFEAGKATALLGPSGSGKTTLMDVLSNRKTvgKIEGEILFGGRT----PTKKMLRRLCGYVEQFDTLVGELTVRQMLMYTAE--LKLTTNF---TKKDKELRVQEALETLGLTACADTVIGgTLkrgvSGGQLKRTNIALSLISQPPVIFLDEPTSGLDSFMANEVATVLRELARlGRTIVCtIHSPTAYAFSCFDAVMMLRDGMTIYEGPQDHI 334
                  5668888899999*********************9875411457999999975....4555666666777788899********8876654..4445555...5678889*************99986542543333889******************************************98445665514455788899999**************98887 PP

>> TIGR01978  sufC: FeS assembly ATPase SufC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.1   0.0   6.4e-19   4.4e-17      13     229 ..     120     331 ..     104     341 .. 0.84

  Alignments for each domain:
  == domain 1    score: 60.1 bits;  conditional E-value: 6.4e-19
    TIGR01978  13 keiLkglnlevkkGevhaimGpnGsGkstLskvlaghekyevtsGeiklkgqdlleleveeraraGlflafqapeeipGvsnkeflrsalnavrkargeeeldllefekllkeklellelde...elleRslneGfsGGekkrneilqlallePklaiLDeiDsGlDvDalkivaegvnklreeekalliithyerllelikPdvvhvlldGrivksGdv 229
                   +iLk+l  + ++G+  a++Gp GsGk tL++vl+ ++++   +Gei + g++ ++     r   G +   q  + +  ++++++l  +++ + +++ ++    ++ e  ++e+le+l l++   +++  +l  G sGG  kr++i   ++ +P ++ LDe  sGlD      va+++ +l++  ++++   h          d v++l dG  + +G  
  MMETSP1137-20121227|10307_1 120 LTILKNLAGSFEAGKATALLGPSGSGKTTLMDVLSNRKTVGKIEGEILFGGRTPTKKML--RRLCG-Y-VEQFDTLVGELTVRQMLMYTAELKLTTNFTK----KDKELRVQEALETLGLTAcadTVIGGTLKRGVSGGQLKRTNIALSLISQPPVIFLDEPTSGLDSFMANEVATVLRELARLGRTIVCTIHSPTAYAFSCFDAVMMLRDGMTIYEGPQ 331
                  479************************************************98655333..33333.4.4688889999999999988888777444444....3444455555555555443339999************************************************************************************9999965 PP

>> TIGR02204  MsbA_rel: ABC transporter, permease/ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.1   0.0   5.1e-19   3.5e-17     318     534 ..      80     305 ..      68     336 .. 0.76

  Alignments for each domain:
  == domain 1    score: 60.1 bits;  conditional E-value: 5.1e-19
    TIGR02204 318 ksdikaPaqpka..lpakvrg.eiefeevkfayParpdq..kaldgldltvrpGetvalvGPsGaGkstllelll..rfydPqsGailldGvdlreldpeelrerlalvpqdsalf.aasvleniryGrpdasdeeveaaakaaeadefisk..lpeGydtllGergv.tLsGGqkqriaiarailkdapiLLLdeatsaLdaeseqlvqqaleelmk.grttlviahr 534
                  k +i++ ++ ++   +++ rg +i+f ++k++ P + +q  + l++l  + ++G+  al GPsG+Gk+tl+++l   +     +G+il++G   r   ++ lr+    v+q  +l     v++ + y      + + ++  k+ + +e +++  l    dt +G      +sGGq +r  ia +++ + p+++Lde ts Ld+   + v + l el + grt +   h 
  MMETSP1137-20121227|10307_1  80 KVQIEKGSSTRKesTAKRSRGlQISFRDLKYSVPLKKKQslTILKNLAGSFEAGKATALLGPSGSGKTTLMDVLSnrKTVGKIEGEILFGG---RTPTKKMLRRLCGYVEQFDTLVgELTVRQMLMYTAELKLTTNFTKKDKELRVQEALETlgLTACADTVIGGTLKrGVSGGQLKRTNIALSLISQPPVIFLDEPTSGLDSFMANEVATVLRELARlGRTIVCTIHS 305
                  55555555444400445555557***********876552267999999***********************996313456679******9...5677899**********666651668999999998877778888888888888888762257899****97654169*******************************************998736666655564 PP

>> TIGR01186  proV: glycine betaine/L-proline transport ATP binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.0      0.67        46      13      58 ..      36      82 ..      26     103 .. 0.74
   2 !   57.6   0.0   3.4e-18   2.4e-16      16     216 ..     130     333 ..     116     336 .. 0.80

  Alignments for each domain:
  == domain 1    score: 0.8 bits;  conditional E-value: 0.67
    TIGR01186 13 dleieeGeiiv.iiGlsGsGkstlvrllnrliePtaGkilidGedia 58
                  +e++  e++      s  Gk+  vrl  r +  t+G++ ++ +++ 
  MMETSP1137-20121227|10307_1 36 TFEVYSAEYLAsQYADSEFGKTDXVRLACRSLTKTQGRMCVNEVKVQ 82
                 4777777776514567899******************9999877654 PP

  == domain 2    score: 57.6 bits;  conditional E-value: 3.4e-18
    TIGR01186  16 ieeGeiiviiGlsGsGkstlvrll.nr.liePtaGkilidGediaeisdaelrevrrkkiamviqkialfPhmtildnislglell...kideqerkekalealklvdleeyedr.....yPdelsGGmqqrvGlaralaaePdlllmdeafsaldPlirdelqdelvklqkklqktivfithd.ldealrlgdrivilkaGeivqvGtPde 216
                   e G    ++G+sGsGk+tl+ +l nr  +   +G+il  G + ++   + l    r+  ++v q  +l+   t+ + + ++ el+   ++ +++++ + +eal  ++l   +d+         +sGG+ +r  +a +l  +P+++++de+ s ld ++ +e+   l +l  +l +tiv   h     a+   d +++l++G  +  G  d+
  MMETSP1137-20121227|10307_1 130 FEAGKATALLGPSGSGKTTLMDVLsNRkTVGKIEGEILFGGRTPTK---KML----RRLCGYVEQFDTLVGELTVRQMLMYTAELKlttNFTKKDKELRVQEALETLGLTACADTviggtLKRGVSGGQLKRTNIALSLISQPPVIFLDEPTSGLDSFMANEVATVLRELA-RLGRTIVCTIHSpTAYAFSCFDAVMMLRDGMTIYEGPQDH 333
                  67899999*************9985552466677888877776543...344....899**********************99986222344455555667888888887777752111156789********************************************96.699****988873678999999999999998887776665 PP

>> TIGR01842  type_I_sec_PrtD: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.4   0.0     3e-18   2.1e-16     326     540 ..     112     334 ..      99     337 .. 0.81

  Alignments for each domain:
  == domain 1    score: 57.4 bits;  conditional E-value: 3e-18
    TIGR01842 326 ppeekk...ktlkgisfalkaGealaiiGpsgsGkssLarllvGvwl..pasGsvrlDgadlkqwdretlGksiGYlPqdveLf.eGtvaeniaRfeenadaekvieaaklagvheli..lrlpkGYdteigeg.GaaLsgGqrqRiaLaRalygdPklvvLDePnanLDeeGeqalakalkelkarkitvvvithrpsl..lelvdkilvlkdGalkafGereev 540
                   p +kk   ++lk++  + +aG+a a++GpsgsGk++L+ +l    +  + +G++ + g   +   ++ l +  GY+ q   L+ e tv + +    e   + +  +  k   v e +  l l    dt+ig +   ++sgGq +R  +a  l  +P ++ LDeP + LD+     +a+ l el + ++t+v   h p++   ++ d +++l+dG     G ++++
  MMETSP1137-20121227|10307_1 112 VPLKKKqslTILKNLAGSFEAGKATALLGPSGSGKTTLMDVLSNRKTvgKIEGEILFGG---RTPTKKMLRRLCGYVEQFDTLVgELTVRQMLMYTAELKLTTNFTKKDKELRVQEALetLGLTACADTVIGGTlKRGVSGGQLKRTNIALSLISQPPVIFLDEPTSGLDSFMANEVATVLRELARLGRTIVCTIHSPTAyaFSCFDAVMMLRDGMTIYEGPQDHI 334
                  444444345899****************************9976433114566666666...45567899999****9965555256999998888776667778888888888887623678999*****8662678******************************************************9999987522789**********99888888776 PP

>> TIGR01277  thiQ: thiamine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.2   0.0   2.6e-18   1.8e-16      20     205 ..     129     323 ..     114     329 .. 0.81

  Alignments for each domain:
  == domain 1    score: 58.2 bits;  conditional E-value: 2.6e-18
    TIGR01277  20 sveaGervailGesGaGkstllnliaGfle..pasGeikvndkdhtrsapyerpvsmlfqennlfahltvrqniglGlkpglklnavqkek...vedvarqvGiadyle.....rlpeelsGGqrqrvalarclvrekpillldepfsaldpklreemlalvkkladekkltlllvthslsd.aaaiasqvvvvedG 205
                  s eaG+  a+lG+sG+Gk+tl+++++   +   ++Gei   ++  t+    +r    + q + l   ltvrq +    +  l  n  +k+k   v+++ + +G++   +      l   +sGGq +r  +a  l+ + p+++ldep s ld  + +e+ +++++la    +t++   hs+   a +  + v+++ dG
  MMETSP1137-20121227|10307_1 129 SFEAGKATALLGPSGSGKTTLMDVLSNRKTvgKIEGEILFGGRTPTKK-MLRRLCGYVEQFDTLVGELTVRQMLMYTAELKLTTNFTKKDKelrVQEALETLGLTACADtviggTLKRGVSGGQLKRTNIALSLISQPPVIFLDEPTSGLDSFMANEVATVLRELAR-LGRTIVCTIHSPTAyAFSCFDAVMMLRDG 323
                  5789*********************9876522689***9999988765.5899999****************998876666666655555433388888999*98777622222477889**************************************999999986.56888888898876155667788888887 PP

>> TIGR03797  NHLM_micro_ABC2: NHLM bacteriocin system ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.4   0.0   1.2e-17   8.3e-16     463     644 ..     117     305 ..      99     340 .. 0.75

  Alignments for each domain:
  == domain 1    score: 55.4 bits;  conditional E-value: 1.2e-17
    TIGR03797 463 kdgplvLddvslkiepGefvaivGaSGsGKStllrlLLgFekPe..sGsvlyDGqdlekldvqavRrqlGvVLQngrllsg.sileniaggasltldeaw.eaarmagleeDikamPmg..lhTviseg.ggtlSGGQrQRlliAralvrkPrillfDEATSALDNrtQaiVs...esleklkvtRiviAHR 644
                  k++ ++L++++ + e+G+  a+ G+SGsGK tl+ +L    +    +G++l+ G+  +   ++ +Rr +G V Q   l+ + ++ + ++ +a+l l   + +  ++  ++e ++++ +     Tvi      ++SGGQ +R  iA +l+++P ++++DE TS LD  + + V      l++l  t +   H 
  MMETSP1137-20121227|10307_1 117 KQSLTILKNLAGSFEAGKATALLGPSGSGKTTLMDVLSNRKTVGkiEGEILFGGRTPT---KKMLRRLCGYVEQFDTLVGElTVRQMLMYTAELKLTTNFtKKDKELRVQEALETLGLTacADTVIGGTlKRGVSGGQLKRTNIALSLISQPPVIFLDEPTSGLDSFMANEVAtvlRELARLGRTIVCTIHS 305
                  67789********************************9998865236*******9754...699**********99888772566667777777666554145677889999999877522579995442468********************************988765550005555565555555554 PP

>> TIGR02633  xylG: D-xylose ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.7   0.0   1.9e-17   1.3e-15       9     220 ..     115     326 ..     108     334 .. 0.85

  Alignments for each domain:
  == domain 1    score: 54.7 bits;  conditional E-value: 1.9e-17
    TIGR02633   9 kkfggvkaldnidlklraGeivslcGenGaGkstlmkvlsgvyphGtydGeilfegeelkassirdterkGiviihqeltlvkelsvleniflGneitlkGglmdydamvlrakellrelkldasnvtrpvsdl....GlGqqqlveiakalnkqvrllildepsaslteketeilldiirdlkakgvacvyishkleevk.avsdtisvirdGqhv 220
                  kk ++++ l+n++   +aG+  +l G  G+Gk+tlm vls     G+ +Geilf g+    + +r         + q  tlv el+v + ++   e+ l    + ++   lr++e l+ l l a  +t   + l     +Gq +  +ia +l  q  ++ ldep++ l     + +  ++r+l + g + v   h     + +  d + ++rdG  +
  MMETSP1137-20121227|10307_1 115 KKKQSLTILKNLAGSFEAGKATALLGPSGSGKTTLMDVLSNRKTVGKIEGEILFGGRTPTKKMLRR----LCGYVEQFDTLVGELTVRQMLMYTAELKLTTNFT-KKDKELRVQEALETLGLTACADTVIGGTLkrgvSGGQLKRTNIALSLISQPPVIFLDEPTSGLDSFMANEVATVLRELARLGRTIVCTIHSPTAYAfSCFDAVMMLRDGMTI 326
                  677889999***********************************************9888777764....456789***********************99555.5566899*************999855544221156788889*************************9999********998877776666655544155699999***9876 PP

>> TIGR01257  rim_protein: rim ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.8   0.1   1.3e-17   8.9e-16    1958    2146 ..     126     322 ..     110     340 .. 0.82

  Alignments for each domain:
  == domain 1    score: 53.8 bits;  conditional E-value: 1.3e-17
    TIGR01257 1958 lcvgvrpgecfgllgvngagktttfkmltgdttvts..gdatvagksiltnisdvhqnmgycpqfdaiddlltgrehlylyarlr...gvpaeeiekvanwsikslglslyadrlag.t....ysggnkrklstaialigcpplvlldepttgmdpqarrmlwntivsiiregravvltshsmeecealctrlaimvkg 2146
                   l+     g++  llg  g+gktt + +l+   tv    g+    g++   +   + +  gy+ qfd++   lt r+ l   a l+       ++ e   + ++++lgl+  ad++ g t     sgg+ ++   a++li  pp+++ldept+g+d      +  ++  + r gr++v t hs       c    +m++ 
  MMETSP1137-20121227|10307_1  126 LAGSFEAGKATALLGPSGSGKTTLMDVLSNRKTVGKieGEILFGGRTP--TKKMLRRLCGYVEQFDTLVGELTVRQMLMYTAELKlttNFTKKDKELRVQEALETLGLTACADTVIGgTlkrgVSGGQLKRTNIALSLISQPPVIFLDEPTSGLDSFMANEVATVLRELARLGRTIVCTIHSPTAYAFSCFDAVMMLRD 322 
                   55566789999********************99976115555555544..445578899*******************999999822234567788788899***********976624333369*********************************999*********************98888888777777665 PP

>> TIGR03796  NHLM_micro_ABC1: NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.1   0.0   1.2e-17   8.3e-16     458     693 ..      83     329 ..      66     337 .. 0.73

  Alignments for each domain:
  == domain 1    score: 55.1 bits;  conditional E-value: 1.2e-17
    TIGR03796 458 leeeeekaaeseekekLsG.kvelrnvtfgysalea...pliedfslslkpGqrvAlvGgsGsGkstiaklvaG..lyepwsGeilfDgkpreeiprevlanslalvdq.divlfegtvrdnltlwdetipeedlvrAakDAaihdvilarpggyea.elaegg..anlsGGqrqRleiARaLvknPsiLilDEatsaLDaetEkaid...enlrrRgctciivaHRLst..iRdcdeiivlerGkvverG 693
                   e+  +++ +++++++ +G ++ +r+++++    ++    +++++  s + G+  Al G+sGsGk t+  +++      + +Geilf g++    ++++l+    +v+q d ++ e tvr+ l    e   ++++++  k+  +++++ ++     a +++ g   + +sGGq +R +iA +L+++P ++ lDE ts LD+   +++    ++l r g t++   H   +      d +++l  G  +  G
  MMETSP1137-20121227|10307_1  83 IEK-GSSTRKESTAKRSRGlQISFRDLKYSVPLKKKqslTILKNLAGSFEAGKATALLGPSGSGKTTLMDVLSNrkTVGKIEGEILFGGRTP---TKKMLRRLCGYVEQfDTLVGELTVRQMLMYTAELKLTTNFTKKDKELRVQEALETLGLTACAdTVIGGTlkRGVSGGQLKRTNIALSLISQPPVIFLDEPTSGLDSFMANEVAtvlRELARLGRTIVCTIHSPTAyaFSCFDAVMMLRDGMTIYEG 329
                  333.233333444467777569999***998544431126899*****************************9822456899*******875...56788888999**966777789999988666666668999999*********9998765544055555444679*******************************988776650115566778888777775443103334666666666666655 PP

>> TIGR01193  bacteriocin_ABC: ABC-type bacteriocin transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.4   0.0   4.9e-17   3.4e-15     448     692 ..      76     331 ..      66     337 .. 0.76

  Alignments for each domain:
  == domain 1    score: 53.4 bits;  conditional E-value: 4.9e-17
    TIGR01193 448 lnevyl.vdsefkekkkltelenlngdievndvsysyGygse....vledislkikknekitlvGlsGsGkstlakllvkff..qaesGeillngkslkdidkhelrqlinylPq.ePfifsGsilenlllgakenvsqeeikkaveiaeikddieklpl..Gyqtelsee.assisgGqkqrlalarallsdskvlildestsnldlltekkivenllklk..dktiifvahrlsva..kksdkiivldeGkiieqGsh 692
                  +nev + ++   +++k+ t++ +   +i++ d++ys  + ++    +l+++  + ++ + ++l+G sGsGk+tl+ +l +     + +Geil++g +     k++lr+l  y+ q + ++ + ++ + l+  a+ +++++  kk  e+  +++ +e l l    +t +       +sgGq +r  +a +l+s+  v+ lde ts ld  + + +   l +l    +ti+   h  +    +  d +++l +G  i +G  
  MMETSP1137-20121227|10307_1  76 VNEVKVqIEKGSSTRKESTAKRSRGLQISFRDLKYSVPLKKKqsltILKNLAGSFEAGKATALLGPSGSGKTTLMDVLSNRKtvGKIEGEILFGGRT---PTKKMLRRLCGYVEQfDTLVGELTVRQMLMYTAELKLTTNFTKKDKEL-RVQEALETLGLtaCADTVIGGTlKRGVSGGQLKRTNIALSLISQPPVIFLDEPTSGLDSFMANEVATVLRELArlGRTIVCTIHSPTAYafSCFDAVMMLRDGMTIYEGPQ 331
                  5777542455556667778888888899*******999876444449*******************************98653377899***99976...4689***********455566677777788888888888877777665.67888888766115677776442568********************************99988765555444311789999888765431145578888888877777755 PP

>> TIGR02314  ABC_MetN: D-methionine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.5   0.0   5.5e-17   3.8e-15      15     239 ..     117     345 ..     109     355 .. 0.84

  Alignments for each domain:
  == domain 1    score: 53.5 bits;  conditional E-value: 5.5e-17
    TIGR02314  15 dkkikaldnvslfvpkgqifgvigasgagkstlircvnllekptsgavivdgkdlttlsnaelvkarrqigmifqhfnllssrtvfgnvalplele...ntpkekikrkvtellalvglsdkkdsy.....psnlsggqkqrvaiaralasepkvllcdeatsaldpattqsilellkeinrrlgltillithemdvvkric.devavidkgeliekgtvseifshpktelakk 239
                  ++ ++ l+n++    +g+   ++g sg+gk+tl+  +   ++ t g+  ++g+ l   + +     rr  g + q   l+   tv + +    el+   n +k++ + +v+e l  +gl+   d+         +sggq +r  ia +l s+p v++ de ts ld   ++ + ++l+e+ r lg ti+   h        c d v ++ +g  i +g   +i +  +t+l ++
  MMETSP1137-20121227|10307_1 117 KQSLTILKNLAGSFEAGKATALLGPSGSGKTTLMDVL--SNRKTVGK--IEGEILFGGRTPTKKMLRRLCGYVEQFDTLVGELTVRQMLMYTAELKlttNFTKKDKELRVQEALETLGLTACADTViggtlKRGVSGGQLKRTNIALSLISQPPVIFLDEPTSGLDSFMANEVATVLRELAR-LGRTIVCTIHSPTAYAFSCfDAVMMLRDGMTIYEGPQDHIGAFFETSLGRQ 345
                  567999***************************9875..56777776..47888888888888899*********999999999999998888876223556888899*************99975221115679*********************************************87.999999999987776655548999999999999888888887777777665 PP

>> TIGR01184  ntrCD: nitrate ABC transporter, ATP-binding proteins C and D
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.8   0.0   4.9e-16   3.4e-14       2     206 ..     124     344 ..     123     347 .. 0.81

  Alignments for each domain:
  == domain 1    score: 50.8 bits;  conditional E-value: 4.9e-16
    TIGR01184   2 kdvdleikkgefislighsgcgkstllnliaglekp..tsgavilegkeitepgpdrmv..vfqnysllpwltvrenialavd.avlrdlskserreiveehielvglreaadkrpe.....qlsggmkqrvaiaralsirpklllldepfgaldaltreelqekllkiveearvtvlmvthdvdealllsdrvvmlt......ngpaakigeilevpler 206
                  k++  + + g+  +l+g sg gk+tl+++++  +     +g + + g+  t+    r+   v q  +l+  ltvr+ ++ + + + +++ +k++++  v+e +e +gl++ ad  ++      +sgg  +r  ia +l  +p +++ldep   ld++  +e+   l ++++  r+ v  +      a+   d v+ml       +gp+ +ig  +e  l r
  MMETSP1137-20121227|10307_1 124 KNLAGSFEAGKATALLGPSGSGKTTLMDVLSNRKTVgkIEGEILFGGRTPTKKMLRRLCgyVEQFDTLVGELTVRQMLMYTAElKLTTNFTKKDKELRVQEALETLGLTACADTVIGgtlkrGVSGGQLKRTNIALSLISQPPVIFLDEPTSGLDSFMANEVATVLRELARLGRTIVCTIHSPTAYAFSCFDAVMMLRdgmtiyEGPQDHIGAFFETSLGR 344
                  5666677889999******************98765115799***************9733668889*********988766626778899999*******************87642222269**************************************99999998887777777766777777778888887511112257889999888877665 PP

>> TIGR01846  type_I_sec_HlyB: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.0   0.0   8.9e-16   6.2e-14     454     676 ..     101     332 ..      70     336 .. 0.76

  Alignments for each domain:
  == domain 1    score: 49.0 bits;  conditional E-value: 8.9e-16
    TIGR01846 454 Gaiefenirfry...kedspevlsnlsldikaGeviGivGpsGsGkstltkllq.rlyvPe.kGrvlvdgvdlaladPawlrrqvgvvlqenvlf.srsirdnialakP.aiseekviaaakl..aGahdfiselkqGyetevgek.GaalsGGqrqrialaralvanPrilildeatsaldyeseavimrnlreick.grtviiiahrlst..vraadrilvlekGkivesGkhe 676
                   +i+f+++++     k++s ++l+nl+ + +aG+   + GpsGsGk+tl  +l  r  v + +G++l  g   +    ++lrr  g v q + l+ + ++r+ ++ +   ++ ++   +  +l    a +    l    +t +g      +sGGq +r  +a +l+++P ++ lde ts ld    + +   lre+++ grt+++  h  ++      d +++l +G  + +G  +
  MMETSP1137-20121227|10307_1 101 LQISFRDLKYSVplkKKQSLTILKNLAGSFEAGKATALLGPSGSGKTTLMDVLSnRKTVGKiEGEILFGGRTPT---KKMLRRLCGYVEQFDTLVgELTVRQMLMYTAElKLTTNFTKKDKELrvQEALE-TLGLTACADTVIGGTlKRGVSGGQLKRTNIALSLISQPPVIFLDEPTSGLDSFMANEVATVLRELARlGRTIVCTIHSPTAyaFSCFDAVMMLRDGMTIYEGPQD 332
                  468888888764332678889****************************9988615555444799**9998654...579**********7777625577877665443133333333333340044444.34688999999986525679*********************************9999*******99889********8765115566999*****9998888665 PP

>> TIGR03269  met_CoM_red_A2: methyl coenzyme M reductase system, component A2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.0   1.5e-06    0.0001      10      63 ..     117     170 ..     111     224 .. 0.77
   2 !   25.9   0.0     1e-08   7.2e-07     405     515 ..     224     334 ..     170     343 .. 0.59

  Alignments for each domain:
  == domain 1    score: 18.8 bits;  conditional E-value: 1.5e-06
    TIGR03269  10 fdglevlknisleleeGevlGilGksGaGksvllhllrGldeyeptsGkiiyhv 63 
                   + l++lkn+   +e G+   +lG sG+Gk+ l+++l   +   +++G+i++  
  MMETSP1137-20121227|10307_1 117 KQSLTILKNLAGSFEAGKATALLGPSGSGKTTLMDVLSNRKTVGKIEGEILFGG 170
                  567889********************************************9853 PP

  == domain 2    score: 25.9 bits;  conditional E-value: 1e-08
    TIGR03269 405 ivlkavGfdeekakeildklpdelseGerhrvalaqvlikeprivildeptGtmdpitkvkvaesilkareeleetfvivshd.mdfvlevcdraalmrdGkivkiGdpeei 515
                   +l + G++    + i   l   +s G+ +r  +a  li +p ++ ldept  +d    ++va  +l+    l++t v   h    +  +  d + ++rdG  +  G+ ++i
  MMETSP1137-20121227|10307_1 224 EALETLGLTACADTVIGGTLKRGVSGGQLKRTNIALSLISQPPVIFLDEPTSGLDSFMANEVAT-VLRELARLGRTIVCTIHSpTAYAFSCFDAVMMLRDGMTIYEGPQDHI 334
                  3455555555555555556666667777777777777777777777777777777766666654.45555666666666666523455555566666666666666655444 PP

>> TIGR03415  ABC_choXWV_ATP: choline ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.8   0.0   6.6e-12   4.6e-10      46     247 ..     129     329 ..     116     336 .. 0.79

  Alignments for each domain:
  == domain 1    score: 36.8 bits;  conditional E-value: 6.6e-12
    TIGR03415  46 dveeGeilvlmGlsGsGkssllravnglnpvsrGkvlvkdedkevdvakcdeatlrklrtkrvsmvfqkfallPWrtveenvafGlels...GvakaerrkrveeqlelvglaeWadkkvg.....elsGGmqqrvGlarafateadillmdePfsaldPliraklqdellelqkklkktivfvshd.ldealklGnriaimegGrivqlg 247
                  + e G  + l+G sGsGk++l+  +    +v + + ++  +          + t ++lr +    v q  +l+  +tv++ + +  el+     +k+++  rv+e le +gl++ ad+ +g      +sGG  +r  +a ++  + +++++deP s ld ++ +++   l el ++l +tiv   h     a+   + + ++++G  +  g
  MMETSP1137-20121227|10307_1 129 SFEAGKATALLGPSGSGKTTLMDVLSNRKTVGKIEGEILFGG--------RTPTKKMLR-RLCGYVEQFDTLVGELTVRQMLMYTAELKlttNFTKKDKELRVQEALETLGLTACADTVIGgtlkrGVSGGQLKRTNIALSLISQPPVIFLDEPTSGLDSFMANEVATVLREL-ARLGRTIVCTIHSpTAYAFSCFDAVMMLRDGMTIYEG 329
                  66889999**************99998888865544444333........334444454.3467787777999************99983224567888889***************98652222268**************************************9888877.68******99997245688888888888888877665 PP

>> TIGR01192  chvA: glucan exporter ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.1   0.0   4.6e-12   3.2e-10     334     528 ..     102     304 ..      41     336 .. 0.74

  Alignments for each domain:
  == domain 1    score: 37.1 bits;  conditional E-value: 4.6e-12
    TIGR01192 334 avefrdisfefanss.qg...vrdvsfeakagqtvaivgptgagkttlinllq..rvydpksgqilidgvdiatvtreslrksiatvfqdagll.nrsirenirlgredatdeevveaakaaaasdfiek..rlkgydtlvgergnr.lsggerqrlaiarailknapilvldeatsaldvetearvkdaidalrk.nrttfiiah 528
                  ++ frd+++  +  + q    +++++    ag++ a++gp+g+gkttl+++l   +     +g+il  g    t t++ lr+    v q   l+ + ++r+ +    e     +  +  k    ++ +e    +   dt++g   +r +sgg+ +r  ia +++ + p++ lde ts ld      v   +  l +  rt     h
  MMETSP1137-20121227|10307_1 102 QISFRDLKYSVPLKKkQSltiLKNLAGSFEAGKATALLGPSGSGKTTLMDVLSnrKTVGKIEGEILFGG---RTPTKKMLRRLCGYVEQFDTLVgELTVRQMLMYTAELKLTTNFTKKDKELRVQEALETlgLTACADTVIGGTLKRgVSGGQLKRTNIALSLISQPPVIFLDEPTSGLDSFMANEVATVLRELARlGRTIVCTIH 304
                  699******998654144222578888999********************9962134455678888887...6899***********99777763679999999988888888888888888777777752245678999998766549*******************************98888887777666541455444444 PP

>> TIGR02323  CP_lyasePhnK: phosphonate C-P lyase system protein PhnK
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.6   0.0   0.00022     0.015      26      68 ..     132     176 ..     117     183 .. 0.80
   2 !   20.4   0.0   9.4e-07   6.5e-05     140     217 ..     245     326 ..     236     334 .. 0.80

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 0.00022
    TIGR02323  26 pGevlgivGesGsGkstllkalaarlla..daGevtyesrsrele 68 
                   G+  +++G sGsGk+tl++ l++r +    +Ge+ +  r+ +++
  MMETSP1137-20121227|10307_1 132 AGKATALLGPSGSGKTTLMDVLSNRKTVgkIEGEILFGGRTPTKK 176
                  688899*****************9976511568888888776555 PP

  == domain 2    score: 20.4 bits;  conditional E-value: 9.4e-07
    TIGR02323 140 aafsGGmqqrlqiarnlvtrprlvfm.eptGGlvsvqarll..llrglvrelglaviivth..lavarllaqrllvmkqGrvv 217
                  +  sGG  +r +ia +l+++p ++f+ ept Gl s  a  +  +lr+l r lg +++   h   a a    + +++++ G  +
  MMETSP1137-20121227|10307_1 245 RGVSGGQLKRTNIALSLISQPPVIFLdEPTSGLDSFMANEVatVLRELAR-LGRTIVCTIHspTAYAFSCFDAVMMLRDGMTI 326
                  678******************************99999876679999999.88888888884444444445666666766665 PP

>> TIGR03719  ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.1   0.1   0.00033     0.023      17      90 ..     119     202 ..     107     228 .. 0.65
   2 !   17.1   0.0   4.9e-06   0.00034     160     216 ..     245     304 ..     205     311 .. 0.76

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 0.00033
    TIGR03719  17 kkeilkdislsffpgakiGvlGlnGaGkstllkimaGvdk..efeGeal......aaegik..vGyleqePkldeektvrenve 90 
                  + +ilk++  sf  g    +lG+ G+Gk+tl+ +++   +  ++eGe+l      +++ ++  +Gy+eq  +l  e tvr++++
  MMETSP1137-20121227|10307_1 119 SLTILKNLAGSFEAGKATALLGPSGSGKTTLMDVLSNRKTvgKIEGEILfggrtpTKKMLRrlCGYVEQFDTLVGELTVRQMLM 202
                  457899999999999999999999999999998887543322344443311100022222222577777777777777776665 PP

  == domain 2    score: 17.1 bits;  conditional E-value: 4.9e-06
    TIGR03719 160 eklsGGekrrvalcrlllekPdlllldePtnhld...aesvaWlekflkeykGtvvavth 216
                    +sGG+ +r  ++  l+++P +++ldePt  ld   a+ va + + l++   t+v+  h
  MMETSP1137-20121227|10307_1 245 RGVSGGQLKRTNIALSLISQPPVIFLDEPTSGLDsfmANEVATVLRELARLGRTIVCTIH 304
                  3589****************************9966667888888888888888887777 PP

>> TIGR01194  cyc_pep_trnsptr: cyclic peptide transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.1   0.0   7.5e-08   5.2e-06     336     548 ..     102     326 ..      59     330 .. 0.78

  Alignments for each domain:
  == domain 1    score: 23.1 bits;  conditional E-value: 7.5e-08
    TIGR01194 336 slelkdvrysykdvessegfalGpidlriasGelvyivGenGcGkstliklllGlyi..pqeGellldGeavsdes.r..ddyrdlfsavfadyylfddlvqpde.......kkqasldqattylsrleledkvk.vedlnystttdlstGqrkrlalvnayleerpvllldewaadqdpafkrvfyeellpdlkrrGktilvishddr.y.feladrlikladGkvv 548
                   + ++d++ys +  +  +   l  +    + G+   ++G  G Gk+tl+ +l         eGe+l+ G + +++  r    y + f ++  +  + + l+   e        k+    + ++ l++l+l    + v ++       +s Gq kr  +  + + + pv+ lde ++  d  f       +l +l r G+ti+   h    y f   d ++ l dG  +
  MMETSP1137-20121227|10307_1 102 QISFRDLKYSVPLKKKQSLTILKNLAGSFEAGKATALLGPSGSGKTTLMDVLSNRKTvgKIEGEILFGGRTPTKKMlRrlCGYVEQFDTLVGELTVRQMLMYTAElklttnfTKKDKELRVQEALETLGLTACADtVIGGTLK--RGVSGGQLKRTNIALSLISQPPVIFLDEPTSGLDS-FMANEVATVLRELARLGRTIVCTIHSPTaYaFSCFDAVMMLRDGMTI 326
                  47789999999999999999999999999***********************9865422579*******9988875232358***********99999998876621111112333334578889999998776514555554..899****************************9996.6666677899***********99997542347888999999999876 PP

>> TIGR00630  uvra: excinuclease ABC subunit A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   0.0     0.013      0.91     622     654 ..     122     153 ..     107     181 .. 0.86
   2 !   12.2   0.0   0.00012    0.0081     823     889 ..     241     304 ..     196     308 .. 0.78

  Alignments for each domain:
  == domain 1    score: 5.4 bits;  conditional E-value: 0.013
    TIGR00630 622 nlkdidvsiplglltvitGvsgsGkstLindiL 654
                   lk++  s+  g+ t++ G+sgsGk tL+ d+L
  MMETSP1137-20121227|10307_1 122 ILKNLAGSFEAGKATALLGPSGSGKTTLM-DVL 153
                  58999999*******************97.555 PP

  == domain 2    score: 12.2 bits;  conditional E-value: 0.00012
    TIGR00630 823 GqpattLsGGeaqrvkLakeLskrstgktlyilDePttGLhfdDikkLlevlqrlvdkGntvvvieh 889
                  G     +sGG  +r  +a  L  +     +  lDePt GL     +++ +vl++l+  G t+v   h
  MMETSP1137-20121227|10307_1 241 GTLKRGVSGGQLKRTNIALSLISQ---PPVIFLDEPTSGLDSFMANEVATVLRELARLGRTIVCTIH 304
                  44456789*******999999765...456779********9999****************998666 PP

>> TIGR01271  CFTR_protein: cystic fibrosis transmembrane conductor regulator (CFTR)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   6.6e-06   0.00046    1231    1392 ..     119     285 ..      94     338 .. 0.79

  Alignments for each domain:
  == domain 1    score: 15.5 bits;  conditional E-value: 6.6e-06
    TIGR01271 1231 gravlqdlsfsveagqrvgllgrtgsgkstllsallr...llstegeiqidgvswnsvtlqkwrkafgvipq.kvfilsgtfrknldpyeqys.deeiwkvaeevglksvieqfpdkldfvlvdggyv...lsnghkqlmclarsilskakillldepsafldpvtlqii 1392
                     ++l++l+ s eag+   llg +gsgk+tl+  l     + + egei   g    + t +  r+  g + q   ++   t r+ l   ++     ++ k  +e+ ++  +e +        v gg +   +s g  +   +a s++s+  +++ldep++ ld    + +
  MMETSP1137-20121227|10307_1  119 SLTILKNLAGSFEAGKATALLGPSGSGKTTLMDVLSNrktVGKIEGEILFGGR---TPTKKMLRRLCGYVEQfDTLVGELTVRQMLMYTAELKlTTNFTKKDKELRVQEALETLGLTACADTVIGGTLkrgVSGGQLKRTNIALSLISQPPVIFLDEPTSGLDSFMANEV 285 
                   5689**************************98776531114566777777775...4567778999999998345666678998887666654266788889999999999999888878888888774446888888899999**************999998765555 PP

>> TIGR00957  MRP_assoc_pro: multi drug resistance-associated protein (MRP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.0   1.4e-05   0.00094     652     799 ..     121     285 ..      74     334 .. 0.74

  Alignments for each domain:
  == domain 1    score: 14.5 bits;  conditional E-value: 1.4e-05
    TIGR00957 652 ptlngltlsipegalvavvgqvgcgkssllsalla..emdkvegkvalkgs..........vayvpq.qawiqndslrenilfgkale..ekyyk..avleacalladleilpsgdrteigekgvnlsggqkqrvslaravysdadiyllddplsavdahvakhi 799
                    l++l  s   g   a++g+ g gk++l+  l     + k+eg++ + g             yv q ++ + + ++r+ +++  +l+   ++ k  + l+    l  l +  + d    g     +sggq +r  +a ++ s+  + +ld+p s +d+ +a+ +
  MMETSP1137-20121227|10307_1 121 TILKNLAGSFEAGKATALLGPSGSGKTTLMDVLSNrkTVGKIEGEILFGGRtptkkmlrrlCGYVEQfDTLVGELTVRQMLMYTAELKltTNFTKkdKELRVQEALETLGLTACADTVIGGTLKRGVSGGQLKRTNIALSLISQPPVIFLDEPTSGLDSFMANEV 285
                  457788888999999***************9997622578****99766642222222222689*9944678899********99876213433311456666777777777777766666677789********************************999876 PP

>> TIGR00157  TIGR00157: ribosome small subunit-dependent GTPase A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.1   0.00026     0.018      90     167 ..     100     176 ..      75     185 .. 0.79

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 0.00026
    TIGR00157  90 eqleelknlgYkvllvsvkneegleelkeklk.krisvfaGqSGVGKSSLiNlldpevkqkvkevseklklGkhTTtsv 167
                       +++l Y+v l  +++   l++l   ++  + + + G+SG GK  L+  l+ +  ++v ++ ++  +G  T t+ 
  MMETSP1137-20121227|10307_1 100 GLQISFRDLKYSVPLKKKQSLTILKNLAGSFEaGKATALLGPSGSGKTTLMDVLSNR--KTVGKIEGEILFGGRTPTKK 176
                  455679999****999999999********97358899**************99865..56777888888887777665 PP

>> TIGR02322  phosphon_PhnN: phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   0.00032     0.022       2      25 ..     134     157 ..     133     175 .. 0.83

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 0.00032
    TIGR02322   2 rlilvvGpsGaGKDtlldlararl 25 
                  +  +++GpsG+GK tl+d++ +r 
  MMETSP1137-20121227|10307_1 134 KATALLGPSGSGKTTLMDVLSNRK 157
                  56789*************987765 PP

>> TIGR00929  VirB4_CagE: type IV secretion/conjugal transfer ATPase, VirB4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.1   0.00029      0.02     440     459 ..     136     155 ..     128     168 .. 0.89

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 0.00029
    TIGR00929 440 TlIfGptgsGKTvllnflla 459
                  T+++Gp+gsGKT+l+ +l +
  MMETSP1137-20121227|10307_1 136 TALLGPSGSGKTTLMDVLSN 155
                  99*************99865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (666 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       304  (0.0741102); expected 82.0 (0.02)
Passed bias filter:                      234  (0.0570453); expected 82.0 (0.02)
Passed Vit filter:                       107  (0.0260848); expected 4.1 (0.001)
Passed Fwd filter:                        59  (0.0143832); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              59  [number of targets reported over threshold]
# CPU time: 1.63u 0.23s 00:00:01.86 Elapsed: 00:00:01.30
# Mc/sec: 676.19
//
Query:       MMETSP1137-20121227|10310_1  [L=402]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.2e-62  210.3   0.0    1.6e-62  209.9   0.0    1.1  1  TIGR00308 TRM1: N2,N2-dimethylguanosine tRNA methyltransferase
    0.00048   17.5   0.0    0.00072   16.9   0.0    1.2  1  TIGR00406 prmA: ribosomal protein L11 methyltransferase
     0.0038   14.6   0.1     0.0066   13.8   0.0    1.5  1  TIGR03534 RF_mod_PrmC: protein-(glutamine-N5) methyltransferase, release factor-specific
     0.0089   13.0   0.1      0.023   11.6   0.0    1.6  2  TIGR00536 hemK_fam: methyltransferase, HemK family


Domain annotation for each model (and alignments):
>> TIGR00308  TRM1: N2,N2-dimethylguanosine tRNA methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  209.9   0.0   1.6e-65   1.6e-62       1     219 [.      84     401 ..      84     402 .] 0.96

  Alignments for each domain:
  == domain 1    score: 209.9 bits;  conditional E-value: 1.6e-65
    TIGR00308   1 vkeGkveikvPkkeevfYnPrmkfnRDlsvvvikafdnlygkeck.......................................................................................................ieildalsasGiRaiRyakeiegvkevianDinPkavesiknnvklnsveniev.in.eDaaavlrkr....nrkfeviDiDPfGtpaPfvdsairaiakrglllvtatDtsaLcGsykkkclrkYganavktesthevaLRllvgfvkreaakYkkalepllslsidhYvRvylkvkrs 219
                  v+eG +++ +P + +vfYnP +  nRDlsv++++ f++ + ke+                                                                                                        + ++dalsasG+Ra+Rya e++g  +++anD+ P ave++k n + n+++++ v +n +Da+a+l+        +fev+D+DP           ++a+a++g+l+vt+tD+++LcG y++ c +kYg++++k++++he+aLR+l+  +  +a +Y + ++plls  i++YvRv++++++s
  MMETSP1137-20121227|10310_1  84 VQEGAASLFFPSRSGVFYNPPQIPNRDLSVLCLQQFTEDFRKEASerhaagaarreareregdstgvasvaaqageeaasagakassdaadgaapfdsssgtegregggqsvaprdttddmegaagddggnrgadgddvgedkenavkVRVIDALSASGLRAMRYALEVPGLDQIVANDLDPSAVEVMKANFERNGLSEPLVvSNvGDASAILHAAkrpvRARFEVVDLDPT----------AQAVAEGGMLMVTCTDLAVLCGAYPEACAAKYGSFPIKGKYCHESALRVLLACIDTHANRYGRYITPLLSVYINFYVRVFVRINTS 401
                  79***********************************999999889*******************************************************************************************************************************************************98755145369999998876787889*******93..........45779******************************************************************************998 PP

>> TIGR00406  prmA: ribosomal protein L11 methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.0     7e-07   0.00072     162     217 ..     233     290 ..     224     310 .. 0.83

  Alignments for each domain:
  == domain 1    score: 16.9 bits;  conditional E-value: 7e-07
    TIGR00406 162 kviDvGcGSGiLsi..aalklgaakvvavDiDplavesarkNlelNqvsdllqvklen 217
                  +viD  + SG+ ++  a+   g +++va D+Dp ave  + N+e+N++s+ l v + +
  MMETSP1137-20121227|10310_1 233 RVIDALSASGLRAMryALEVPGLDQIVANDLDPSAVEVMKANFERNGLSEPLVVSNVG 290
                  688888889987654388889***************************9988777655 PP

>> TIGR03534  RF_mod_PrmC: protein-(glutamine-N5) methyltransferase, release factor-specific
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.0   6.4e-06    0.0066      86     143 ..     228     288 ..     220     336 .. 0.84

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 6.4e-06
    TIGR03534  86 kkeklkvlDlgtGsGaIalalakelpda.kviavDiseeAlkvarkNakrlglke..vefl 143
                  ++ k++v+D  + sG  a+  a e+p + +++a D++++A++v ++N++r+gl+e  v   
  MMETSP1137-20121227|10310_1 228 NAVKVRVIDALSASGLRAMRYALEVPGLdQIVANDLDPSAVEVMKANFERNGLSEplVVSN 288
                  344789********************99568899*******************96553333 PP

>> TIGR00536  hemK_fam: methyltransferase, HemK family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0      0.57   5.9e+02     189     201 ..     102     114 ..      99     128 .. 0.73
   2 !   11.6   0.0   2.3e-05     0.023     114     165 ..     230     282 ..     225     292 .. 0.87

  Alignments for each domain:
  == domain 1    score: -2.9 bits;  conditional E-value: 0.57
    TIGR00536 189 NPPYidkedladk 201
                  NPP i+++dl+ +
  MMETSP1137-20121227|10310_1 102 NPPQIPNRDLSVL 114
                  9*******99754 PP

  == domain 2    score: 11.6 bits;  conditional E-value: 2.3e-05
    TIGR00536 114 plkhilDlgtGsGcIalalAleipna.eviavDistdalavaeeNaeklklee 165
                   + +++D    sG  a+  Ale+p + ++ a D+ ++a++v ++N e+++l+e
  MMETSP1137-20121227|10310_1 230 VKVRVIDALSASGLRAMRYALEVPGLdQIVANDLDPSAVEVMKANFERNGLSE 282
                  557899999999************874799********************996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (402 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       113  (0.0275475); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.30u 0.15s 00:00:00.44 Elapsed: 00:00:00.42
# Mc/sec: 1263.32
//
Query:       MMETSP1137-20121227|10311_1  [L=38]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (38 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        15  (0.00365675); expected 82.0 (0.02)
Passed bias filter:                       15  (0.00365675); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.15s 00:00:00.26 Elapsed: 00:00:00.42
# Mc/sec: 119.42
//
Query:       MMETSP1137-20121227|10312_1  [L=136]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (136 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       100  (0.0243784); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.16s 00:00:00.31 Elapsed: 00:00:00.27
# Mc/sec: 664.83
//
Query:       MMETSP1137-20121227|10313_1  [L=336]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0022   13.6  37.9     0.0032   13.1  26.3    1.2  1  TIGR02168 SMC_prok_B: chromosome segregation protein SMC
     0.0071   11.9  30.9      0.014   10.9   6.7    2.0  2  TIGR02169 SMC_prok_A: chromosome segregation protein SMC


Domain annotation for each model (and alignments):
>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.1  26.3   1.6e-06    0.0032     213     513 ..       6     303 ..       3     329 .. 0.71

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 1.6e-06
    TIGR02168 213 ekykelkeelrelelallvlrleelkeeleeleeelkeaeeeleeleaelkeleeeleelrlekseleeeleelqkelqelkaeisrleqeieilkerleqlekeleeleeqleeleskkeeleeelaeleeeleelkeelesleaeleeaeaeleelesrleeleeeleelrsevaeleeqla...slnaelerleaeleqleerrerlkqeieelekkleeaeaelkelqeeleeleeeleeleeelerleealeeleeeleeaeqalqkaeeelaqlqarlesleslqenleglsegvkal 513
                  ++++ l++e++++ ++ ++ + e + +e +e+++++ +a++e+ +++++l++le++l+e+ +  +e++ +++++ +e + l++++++ eq+i++l+  l+++++  e+  ++ ++l++++  ++e   +  e   e  +  ++++a+ +e+  ++e+l s +++ e+el +++++ a+l+e+++     na+  r e    ql e  +r ++   +++     a+a l+e++  l++    ++ +++ +++ +  ++ l+ +l+eae a ++  + l +lqa ++sl + +e++++  +++ + 
  MMETSP1137-20121227|10313_1   6 KEFRHLEQEIESAVHNQSTPSAEPRPDEPAETKSAEPAAASERPKAQQQLRRLEAKLKEKIDLCAEKDLQIAAVLNEGEMLSKRQAEQEQTIKKLRVALREAQTAAEQHGDEAATLRAQLAAAAEGEGK--EGSREGGKGGANCSADGDEL-GAAEQLASVQAAFEAELSAAAEREAALSESVRelqLDNARRLRDEGLAAQLGELSARSDAAEAQAK---VLADAVLQETEPLLKQIASLQQGQQQMQAAWRSSEAALRGRLREAEAAATARGNALVKLQAHIDSLXAELEEQRSAARAAVES 303
                  6799999999999999999999999**************************************************************************999999999999998888886665554433..33444444445555555553.334444444555555555555444444444440004444443333333333333333333222222...22456667777777777777777777777777788888899************************999999998877655443 PP

>> TIGR02169  SMC_prok_A: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.9   6.7   6.9e-06     0.014     688     773 ..      45     130 ..      13     140 .. 0.89
   2 !    7.2   9.2   8.6e-05      0.18     271     425 ..     160     313 ..     145     335 .. 0.70

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 6.9e-06
    TIGR02169 688 ereleslqselrriekrldelssklsdaekkieeiekeleqleeeeeklkerleeleeklseleeeleekkeelkeleaeieelee 773
                   +e+ ++q++lrr+e +l+e+ +   +   +i ++ +e e+l+++++++++ +++l+  l+e + + e++ +e ++l+a++++  e
  MMETSP1137-20121227|10313_1  45 ASERPKAQQQLRRLEAKLKEKIDLCAEKDLQIAAVLNEGEMLSKRQAEQEQTIKKLRVALREAQTAAEQHGDEAATLRAQLAAAAE 130
                  56888999***********************************************************************9987655 PP

  == domain 2    score: 7.2 bits;  conditional E-value: 8.6e-05
    TIGR02169 271 iekkleelnkkieklgeeeqlavkekleelkaeieklera..iaekeee.ledaeerlakaeaeidklkeeieelereieeekkereklkeelkelkeeleelraeleevdkeaaelreelkelkekleklkeelnelkreldrlleelkrleeelae 425
                  ++++ ++ ++++++ + e+ +a+ e ++el+ + ++  r   +a++  e   ++++ +a+a++  d++ +e e l ++i++ ++ +++++++ +++++   +lr +l e +++a +  ++l +l+ ++++l  el+e +   +   e  + ++   +e
  MMETSP1137-20121227|10313_1 160 LASVQAAFEAELSA-AAEREAALSESVRELQLDNARRLRDegLAAQLGElSARSDAAEAQAKVLADAVLQETEPLLKQIASLQQGQQQMQAAWRSSEA---ALRGRLREAEAAATARGNALVKLQAHIDSLXAELEEQRSAARAAVESERAARVSAEE 313
                  44455566677777.55667789999999998876654441133333331457888899999999999999999999999999999999999887765...567788888888888889999999999999999999885555555544444333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (336 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       403  (0.0982448); expected 82.0 (0.02)
Passed bias filter:                      105  (0.0255973); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.33u 0.18s 00:00:00.51 Elapsed: 00:00:00.49
# Mc/sec: 905.07
//
Query:       MMETSP1137-20121227|10315_1  [L=287]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (287 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       335  (0.0816675); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.16s 00:00:00.40 Elapsed: 00:00:00.52
# Mc/sec: 728.48
//
Query:       MMETSP1137-20121227|10316_1  [L=145]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (145 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       105  (0.0255973); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.19s 00:00:00.38 Elapsed: 00:00:00.32
# Mc/sec: 598.08
//
Query:       MMETSP1137-20121227|10317_1  [L=377]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (377 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       136  (0.0331546); expected 82.0 (0.02)
Passed bias filter:                      101  (0.0246221); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.12s 00:00:00.40 Elapsed: 00:00:00.41
# Mc/sec: 1213.66
//
Query:       MMETSP1137-20121227|10318_1  [L=192]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.3e-10   36.8   0.0    1.1e-09   36.4   0.0    1.1  1  TIGR02933 nifM_nitrog: nitrogen fixation protein NifM


Domain annotation for each model (and alignments):
>> TIGR02933  nifM_nitrog: nitrogen fixation protein NifM
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.4   0.0   2.6e-13   1.1e-09     136     218 ..     108     187 ..      76     191 .. 0.83

  Alignments for each domain:
  == domain 1    score: 36.4 bits;  conditional E-value: 2.6e-13
    TIGR02933 136 ddreavrerieallrrlrakreafaelaerhseCPtalegGlLGwvsrGlLypeLdaaLfqlaegeLsavieselGwhlLlCe 218
                  d+ ++++++i +    l   +  f e a  hs CP+a  gG +G  ++G +  e ++  f+ + g++  +++++ G+hl+l +
  MMETSP1137-20121227|10318_1 108 DKCQSLKDQIATADGEL---PVVFGEFAAAHSSCPSAPRGGAIGPFGKGQMVNEFEKVAFREEIGQVHGPVKTKYGYHLVLIN 187
                  45556666666655554...5679999****************************************************9865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (192 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       111  (0.02706); expected 82.0 (0.02)
Passed bias filter:                      106  (0.0258411); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.20u 0.15s 00:00:00.35 Elapsed: 00:00:00.35
# Mc/sec: 724.05
//
Query:       MMETSP1137-20121227|10320_1  [L=392]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (392 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        24  (0.0058508); expected 82.0 (0.02)
Passed bias filter:                       21  (0.00511945); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.13s 00:00:00.38 Elapsed: 00:00:00.39
# Mc/sec: 1326.66
//
Query:       MMETSP1137-20121227|10321_1  [L=528]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (528 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       189  (0.0460751); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.16s 00:00:00.61 Elapsed: 00:00:00.42
# Mc/sec: 1659.29
//
Query:       MMETSP1137-20121227|10322_1  [L=395]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (395 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       329  (0.0802048); expected 82.0 (0.02)
Passed bias filter:                      140  (0.0341297); expected 82.0 (0.02)
Passed Vit filter:                        18  (0.0043881); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.16s 00:00:00.53 Elapsed: 00:00:00.42
# Mc/sec: 1241.33
//
Query:       MMETSP1137-20121227|10323_1  [L=265]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.035   11.4   0.1       0.22    8.8   0.1    2.1  1  TIGR03162 ribazole_cobC: alpha-ribazole phosphatase


Domain annotation for each model (and alignments):
>> TIGR03162  ribazole_cobC: alpha-ribazole phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   0.1   5.3e-05      0.22       1      37 [.     105     142 ..     105     198 .. 0.82

  Alignments for each domain:
  == domain 1    score: 8.8 bits;  conditional E-value: 5.3e-05
    TIGR03162   1 lyLiRHgevevnk.gkcYGqtDvpLaekgeeqaaalre 37 
                  +y++RHge ++n+  + +G+   ++ae+ + q      
  MMETSP1137-20121227|10323_1 105 VYFVRHGEAAHNAaAVEFGKKPAGIAEDSHGQHPYRDP 142
                  79*******988615788******99999888665555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (265 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       136  (0.0331546); expected 82.0 (0.02)
Passed bias filter:                      109  (0.0265724); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.25u 0.16s 00:00:00.41 Elapsed: 00:00:00.39
# Mc/sec: 896.85
//
Query:       MMETSP1137-20121227|10324_1  [L=677]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.1e-65  219.7   0.0    2.1e-65  218.8   0.0    1.4  1  TIGR01982 UbiB: 2-polyprenylphenol 6-hydroxylase
     0.0017   15.3   0.0     0.0085   13.1   0.0    1.8  2  TIGR02721 ycfN_thiK: thiamine kinase


Domain annotation for each model (and alignments):
>> TIGR01982  UbiB: 2-polyprenylphenol 6-hydroxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  218.8   0.0     1e-68   2.1e-65      42     426 ..     225     617 ..     196     626 .. 0.88

  Alignments for each domain:
  == domain 1    score: 218.8 bits;  conditional E-value: 1e-68
    TIGR01982  42 earkeslgerlrlaleelGPifiKlGQvlstRaDllpeeiaeeLslLqdkvppfdlkaarkvieaelgk.pveelF..aefeekPlAaASiaQvhkAvlvegkeVavKvlRPgiekkieadikllellaklvekllpeakrlrptevvkefektlkeEldlrlEaanaselkenfkndk...klivPevyweltservltlewidgipvsdleklkeaGldlkalaenlvesflkqvlrdgfFHaDlHpGNilvakdgkiialDfGivgrlseeerrylaeillgflerdykrvaevhleagyvpsdtdlaeleqairavgepiv.....gkplkeisigklLaklfkitekfe...levqpeLlLLqKtlltvEGvgrqldpdldlwkvaepvvkkli 426
                  +++ e+++++l++ l +lGP+fiK GQ  s R+Dllp+ +++ L+ Lqd+vppf++k+a +++++elg+   + lF  a +  +P+AaAS++Qv+k +l++g+ VavKv+RPg+ + i+ d++l++   + + kl+      +     +e +k   +Eld+++Eaana+++ e +k  +   k+  P v+ +  ++rvlt+ew+dg  ++          d  +l +  + + l+++l  g  H D+HpGN+l ++dgk+ +lD G+v ++ ++ +  l+e +  +  +dy++v   ++++g+vp   +     + +  +  + +     g  + ++ + +l+a++ +++++      +v+p ++ ++K++ ++EG+g q dp+ ++++ + p+v++ i
  MMETSP1137-20121227|10324_1 225 NSKAEQRAKQLTALLTALGPTFIKAGQSASIRSDLLPPTYITGLTALQDQVPPFSAKEAEAILDEELGEmARKRLFgsAGLPARPVAAASLGQVYKTKLLSGTPVAVKVQRPGMLDIIALDMHLIRDYGAPIGKLFGVPG--DLAGTAEEWAKGFVAELDYAREAANAAQFSEDLKGTPlegKVFAPPVVADASTKRVLTTEWVDGERLDKSSV----AADVPRLCSVAMITYLQMMLGSGTLHCDPHPGNLLRTSDGKLCILDWGLVTSIAPDLQLTLIEHVAHLTAEDYDKVPGDLVRLGFVPPGGESIVRDNGVADFLSYTYstwtsGGGAAKLDVPALFARVRELAAESPggiFQVPPYFAYIAKSFSVLEGIGLQADPNYSIVRETLPYVSQRI 617
                  23357899*************************************************************66667783355889****************************************************96666..667889**************************998654449***********************98865443....35889999999999*************************************************************************987766666666666665541111256799**************9986434489***********************************99866 PP

>> TIGR02721  ycfN_thiK: thiamine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.0     0.033        68      50      93 ..     404     450 ..     389     458 .. 0.75
   2 !   13.1   0.0   4.1e-06    0.0085     141     186 ..     453     499 ..     429     511 .. 0.79

  Alignments for each domain:
  == domain 1    score: 0.3 bits;  conditional E-value: 0.033
    TIGR02721  50 alklaPkvil..vneewllvewleGevitkd.efvaldellelaall 93 
                     +aP v++   +++ l  ew++Ge + k      ++ l+++a + 
  MMETSP1137-20121227|10324_1 404 GKVFAPPVVAdaSTKRVLTTEWVDGERLDKSsVAADVPRLCSVAMIT 450
                  55678877752256788999******998752445677888888765 PP

  == domain 2    score: 13.1 bits;  conditional E-value: 4.1e-06
    TIGR02721 141 paplklallHlDvhaeNlvkteqG.lklIDWEYAsdgDialeLaavl 186
                  + +l    lH D h +Nl++t++G l ++DW   +   + l+L+++ 
  MMETSP1137-20121227|10324_1 453 QMMLGSGTLHCDPHPGNLLRTSDGkLCILDWGLVTSIAPDLQLTLIE 499
                  556667789***************55678****99999999999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (677 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       229  (0.0558264); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.15s 00:00:00.65 Elapsed: 00:00:00.69
# Mc/sec: 1295.02
//
Query:       MMETSP1137-20121227|10325_1  [L=154]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-51  172.3   3.6    1.6e-51  172.2   2.5    1.0  1  TIGR03629 arch_S13P: archaeal ribosomal protein S13P
    8.7e-17   59.5   4.7    2.7e-08   32.1   0.0    2.1  2  TIGR03631 bact_S13: 30S ribosomal protein S13


Domain annotation for each model (and alignments):
>> TIGR03629  arch_S13P: archaeal ribosomal protein S13P
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  172.2   2.5   7.9e-55   1.6e-51       1     144 []       9     153 ..       9     153 .. 0.99

  Alignments for each domain:
  == domain 1    score: 172.2 bits;  conditional E-value: 7.9e-55
    TIGR03629   1 elkylvriadtDldGnkkvelaLteikGiglrlakaiveklgldkeaklGelsdeevekleeaven.aeeeiPsWllnrrkdyetGedkhlvgsdleltvkeDinrlkkirsyrGiRhelGlkvRGqRtkstgRkgstvGvsrkk 144
                  ++++++r+ +t+ldG+ kv++aLt+ikG+g+r++++ ++k+++d +++ Gel+ eeve+l ++v+n  + ++P+W+lnr+kd++ G+  + v++ l+++++eD++r+kkir++rG+Rh  Gl+vRGqRtk+tgRkg+tvGvs+kk
  MMETSP1137-20121227|10325_1   9 NFQHILRVLNTNLDGKVKVMFALTSIKGVGRRFSNVSCKKAEVDLNKRAGELTAEEVERLVTIVQNpRQFKVPDWMLNRKKDVKDGKFSQCVSNTLDMKLREDLERMKKIRAHRGLRHYWGLRVRGQRTKTTGRKGRTVGVSKKK 153
                  599***************************************************************99***************************************************************************97 PP

>> TIGR03631  bact_S13: 30S ribosomal protein S13
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.1   0.0   1.3e-11   2.7e-08       1      60 [.      15      74 ..      15      92 .. 0.92
   2 !   29.0   1.1   1.2e-10   2.5e-07      64     107 ..     100     143 ..      75     148 .. 0.84

  Alignments for each domain:
  == domain 1    score: 32.1 bits;  conditional E-value: 1.3e-11
    TIGR03631  1 RiagvdipknkrveiaLtyiyGigktrakkilekagidedkkvkdlteeelekireviee 60
                 R+ + ++  + +v +aLt+i G+g+  ++  ++ka++d +k++ +lt ee+e++ +++++
  MMETSP1137-20121227|10325_1 15 RVLNTNLDGKVKVMFALTSIKGVGRRFSNVSCKKAEVDLNKRAGELTAEEVERLVTIVQN 74
                 78889999999*********************************************9986 PP

  == domain 2    score: 29.0 bits;  conditional E-value: 1.2e-10
    TIGR03631  64 vegdlrrevslnikrlvdigcyrGlRhrkgLPvrGqrtktnart 107
                  v   l  +++ ++ r++ i+++rGlRh  gL vrGqrtkt  r 
  MMETSP1137-20121227|10325_1 100 VSNTLDMKLREDLERMKKIRAHRGLRHYWGLRVRGQRTKTTGRK 143
                  5566777888999***************************8774 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (154 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       166  (0.0404681); expected 82.0 (0.02)
Passed bias filter:                      148  (0.03608); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.19u 0.17s 00:00:00.36 Elapsed: 00:00:00.26
# Mc/sec: 781.78
//
Query:       MMETSP1137-20121227|10327_1  [L=98]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (98 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       106  (0.0258411); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.28
# Mc/sec: 461.96
//
Query:       MMETSP1137-20121227|10328_1  [L=246]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (246 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       140  (0.0341297); expected 82.0 (0.02)
Passed bias filter:                      112  (0.0273038); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.18s 00:00:00.42 Elapsed: 00:00:00.39
# Mc/sec: 832.55
//
Query:       MMETSP1137-20121227|10330_1  [L=424]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (424 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        85  (0.0207216); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.15s 00:00:00.44 Elapsed: 00:00:00.39
# Mc/sec: 1434.96
//
Query:       MMETSP1137-20121227|10331_1  [L=163]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (163 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        60  (0.014627); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.16s 00:00:00.33 Elapsed: 00:00:00.27
# Mc/sec: 796.82
//
Query:       MMETSP1137-20121227|10332_1  [L=179]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.4e-17   60.4   0.1    2.7e-17   60.2   0.0    1.0  1  TIGR01389 recQ: ATP-dependent DNA helicase RecQ
    1.8e-13   47.9   0.1    2.1e-13   47.7   0.0    1.0  1  TIGR00614 recQ_fam: ATP-dependent DNA helicase, RecQ family
    2.5e-08   30.5   0.0    2.8e-08   30.4   0.0    1.2  1  TIGR00580 mfd: transcription-repair coupling factor
    3.7e-08   29.4   0.0    4.2e-08   29.2   0.0    1.0  1  TIGR04121 DEXH_lig_assoc: DEXH box helicase, DNA ligase-associated
    4.1e-07   27.3   0.1    4.7e-07   27.1   0.1    1.1  1  TIGR01587 cas3_core: CRISPR-associated helicase Cas3
    7.4e-06   22.3   0.0    7.9e-06   22.2   0.0    1.1  1  TIGR03817 DECH_helic: helicase/secretion neighborhood putative DEAH-box helicase
    1.1e-05   22.2   0.0    1.2e-05   22.0   0.0    1.1  1  TIGR00643 recG: ATP-dependent DNA helicase RecG
     0.0011   15.1   0.1     0.0012   14.9   0.0    1.1  1  TIGR00631 uvrb: excinuclease ABC subunit B


Domain annotation for each model (and alignments):
>> TIGR01389  recQ: ATP-dependent DNA helicase RecQ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.2   0.0   5.3e-20   2.7e-17     201     335 ..      20     152 ..       2     168 .. 0.82

  Alignments for each domain:
  == domain 1    score: 60.2 bits;  conditional E-value: 5.3e-20
    TIGR01389 201 lafsvvkkenkkkqlleylkkereksGiiYassRkkveelaeaLeskgiealaYhaGlskkvRaeaqekFleddvkvvvatvaFGmGidksdvRfvihldlPknlesyyqeaGRaGRDGlkaeaillyse.aDlal 335
                  + +     ++k+++l e l   + +  +++ +s ++  +l + L++ +++++a h+ +++++R    ++F   + +++v+t  +G Gid   v  v+ +d+P + ++y   +GRaGR G k  ai++ s+ aD ++
  MMETSP1137-20121227|10332_1  20 VKLAE---NEKNRKLNELLDALEFNQVVVFVKSVARATQLDKLLQECNFPSVAIHGSMKQEERISMYQSFKDFKHRILVSTDIWGRGIDIERVNIVVNYDMPDSSDTYLHRVGRAGRFGTKGLAITFASSdADAKV 152
                  34444...44444555555555556789**********************************************************************************************99986543145554 PP

>> TIGR00614  recQ_fam: ATP-dependent DNA helicase, RecQ family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.7   0.0   4.1e-16   2.1e-13     191     331 ..      10     145 ..       2     163 .. 0.84

  Alignments for each domain:
  == domain 1    score: 47.7 bits;  conditional E-value: 4.1e-16
    TIGR00614 191 vtitsfdRpnlkyeveekkskiledllkfivkefkgksGiiYClsrkkveqvaaeLqkkglaaaaYhagleesarkevqkkflrdeiqvvvatvafGmGinkpdvRfvihyslpksiesYYqesGRaGRDglksecvlfya 331
                   t  + +++ +k+  +ek+    ++l++++  + + +  +++ +s +++ q+ + Lq+ +  + a h ++++++r ++ + f   + +++v+t  +G Gi+   v  v+ y++p s ++Y   +GRaGR g k  ++ f +
  MMETSP1137-20121227|10332_1  10 LTLHGLQQHYVKLAENEKN----RKLNELLD-ALEFNQVVVFVKSVARATQLDKLLQECNFPSVAIHGSMKQEERISMYQSFKDFKHRILVSTDIWGRGIDIERVNIVVNYDMPDSSDTYLHRVGRAGRFGTKGLAITFAS 145
                  5556666666666666666....44555555.55566779********************************************************************************************999988754 PP

>> TIGR00580  mfd: transcription-repair coupling factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.4   0.0   5.5e-11   2.8e-08     676     780 ..      54     161 ..      17     168 .. 0.79

  Alignments for each domain:
  == domain 1    score: 30.4 bits;  conditional E-value: 5.5e-11
    TIGR00580 676 eqlrelvPeari..aiaHgqmeeeeleevmleFlkkefdvLvcTtiiEsGidipnaNTiiierAdkfGlaqLyQLr.GRvGRskkkayayllvps..qkkltekalkRLe 780
                  +ql +l  e +   + +Hg m++ee  ++ ++F++ ++ +Lv+T i   Gidi ++N  i+ + d+   ++ y  r GR GR   k+ a     s  + k+ e+ + R e
  MMETSP1137-20121227|10332_1  54 TQLDKLLQECNFpsVAIHGSMKQEERISMYQSFKDFKHRILVSTDIWGRGIDIERVN--IVVNYDMPDSSDTYLHRvGRAGRFGTKGLAITFASSdaDAKVLEDVQSRFE 161
                  55666666554322567****************************************..666778888888887777*****9999988544433114566666666665 PP

>> TIGR04121  DEXH_lig_assoc: DEXH box helicase, DNA ligase-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.2   0.0   8.2e-11   4.2e-08     239     345 ..      32     133 ..      20     157 .. 0.80

  Alignments for each domain:
  == domain 1    score: 29.2 bits;  conditional E-value: 8.2e-11
    TIGR04121 239 eevleeikkarttlvFtNtRsqaEllfqaLleaneelaleialhHgsldkeqRekveaalkagklravvcTssLdLGvDfgdvdlviqvGspkgvaRllQRiGRsnH 345
                  +e+l++++ ++ ++vF+   ++a  l + L e n      +a+ Hgs+++e+R  + + +k+ k r++v+T     G+D ++v+ v++   p +    l R+GR++ 
  MMETSP1137-20121227|10332_1  32 NELLDALEFNQ-VVVFVKSVARATQLDKLLQECNFP---SVAI-HGSMKQEERISMYQSFKDFKHRILVSTDIWGRGIDIERVNIVVNYDMPDSSDTYLHRVGRAGR 133
                  55556655544.567777777776555555444443...5666.8************************************************************85 PP

>> TIGR01587  cas3_core: CRISPR-associated helicase Cas3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.1   0.1   9.1e-10   4.7e-07     203     322 ..      22     137 ..       2     163 .. 0.81

  Alignments for each domain:
  == domain 1    score: 27.1 bits;  conditional E-value: 9.1e-10
    TIGR01587 203 kdkleeisslerllealkkekkvliivNtVdrAqelyqklkekapeeeiiLlHsrftekdrekkEaellkelkknekfvivaTQviEvslDis.vdvlitelap..idsLiQRlGRlaRygrk 322
                   + +e+ + l++ll+a  ++++v+++v +V rA +l + l+e +     + +H+ +++++r+       +++k+++++++v T +   ++Di+ v++++    p   d    R+GR  R+g k
  MMETSP1137-20121227|10332_1  22 LAENEKNRKLNELLDA-LEFNQVVVFVKSVARATQLDKLLQECNFP--SVAIHGSMKQEERISM----YQSFKDFKHRILVSTDIWGRGIDIErVNIVVNYDMPdsSDTYLHRVGRAGRFGTK 137
                  3455566667777765.5799*******************987654..689********99988....699999999***************85677777666633577899*******9876 PP

>> TIGR03817  DECH_helic: helicase/secretion neighborhood putative DEAH-box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.2   0.0   1.5e-08   7.9e-06     307     387 ..      68     148 ..      28     167 .. 0.85

  Alignments for each domain:
  == domain 1    score: 22.2 bits;  conditional E-value: 1.5e-08
    TIGR03817 307 aayraGylaedrreleralkdGellgvaatnalelGvdisGldavviaGfPGtvaslwqqaGraGrrgqdalvvlvarddP 387
                   a  +   +e+r  + +++kd + + +++t+    G+di  ++ vv    P    ++  ++GraGr g + l++  a+ d 
  MMETSP1137-20121227|10332_1  68 VAIHGSMKQEERISMYQSFKDFKHRILVSTDIWGRGIDIERVNIVVNYDMPDSSDTYLHRVGRAGRFGTKGLAITFASSDA 148
                  4556667789*****************************************************************999885 PP

>> TIGR00643  recG: ATP-dependent DNA helicase RecG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.0   0.0   2.3e-08   1.2e-05     485     563 ..      67     144 ..      20     164 .. 0.81

  Alignments for each domain:
  == domain 1    score: 22.0 bits;  conditional E-value: 2.3e-08
    TIGR00643 485 vallhgrlksdekeevleeFrekevdiLvaTtviEvGvdvPnatvmviedaeRfGlsqLHQLRGRvgRgekksyclLva 563
                     +hg++k++e+ ++ ++F++ +  iLv+T +   G+d+ +++++v +d      + LH + GR gR  +k+ ++  a
  MMETSP1137-20121227|10332_1  67 SVAIHGSMKQEERISMYQSFKDFKHRILVSTDIWGRGIDIERVNIVVNYDMPDSSDTYLHRV-GRAGRFGTKGLAITFA 144
                  3468*******************************************999888888889987.8888888887776665 PP

>> TIGR00631  uvrb: excinuclease ABC subunit B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   2.4e-06    0.0012     445     562 ..      42     153 ..      17     166 .. 0.82

  Alignments for each domain:
  == domain 1    score: 14.9 bits;  conditional E-value: 2.4e-06
    TIGR00631 445 rvlvttltkkmaedltdylkelgikvkylhseidtlerveiirdLrkgefdvlvGinLLreGlDlPevslvailDadkeGflrsersLiqtiGraarn.veGkvilyadkitesmekai 562
                  +v+v +     a +l + l+e +     +h  ++  er+++ +++++ +  +lv  ++   G+D+  v +v   D     +  s+ + +  +Gra r  ++G +i +a +  ++  k++
  MMETSP1137-20121227|10332_1  42 QVVVFVKSVARATQLDKLLQECNFPSVAIHGSMKQEERISMYQSFKDFKHRILVSTDIWGRGIDIERVNIVVNYD-----MPDSSDTYLHRVGRAGRFgTKGLAITFASS--DADAKVL 153
                  56666667777999*********************************************************9887.....567888999999999995378999988864..3334455 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (179 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       183  (0.0446124); expected 82.0 (0.02)
Passed bias filter:                      147  (0.0358362); expected 82.0 (0.02)
Passed Vit filter:                        19  (0.00463189); expected 4.1 (0.001)
Passed Fwd filter:                         8  (0.00195027); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.29u 0.16s 00:00:00.44 Elapsed: 00:00:00.39
# Mc/sec: 605.80
//
Query:       MMETSP1137-20121227|10334_1  [L=72]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        2.9    5.9   9.1        3.1    5.8   6.3    1.1  1  TIGR02557 HpaP: type III secretion protein HpaP


Domain annotation for each model (and alignments):
>> TIGR02557  HpaP: type III secretion protein HpaP
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   6.3   0.00075       3.1      33      91 ..       3      58 ..       1      69 [. 0.79

  Alignments for each domain:
  == domain 1    score: 5.8 bits;  conditional E-value: 0.00075
    TIGR02557 33 avasappPrpepppscdedrPepaaetraseapaeapldadPalepdalkaeahesaia 91
                 +    ppP+p ppp+  + r ++ a t+       a+ + +P+ +p +   +a +++ a
  MMETSP1137-20121227|10334_1  3 RAITSPPPPPSPPPQLSDSRSAATAITPS---AMTANNNISPPTLPTTFASSATTNTSA 58
                 5556688889**********999999888...566777889999999988888777655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        43  (0.0104827); expected 82.0 (0.02)
Passed bias filter:                       39  (0.00950756); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.35
# Mc/sec: 271.52
//
Query:       MMETSP1137-20121227|10335_1  [L=150]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (150 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       141  (0.0343735); expected 82.0 (0.02)
Passed bias filter:                      116  (0.0282789); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.18s 00:00:00.37 Elapsed: 00:00:00.36
# Mc/sec: 549.95
//
Query:       MMETSP1137-20121227|10336_1  [L=1448]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00011   19.0   0.0    0.00019   18.2   0.0    1.3  1  TIGR02928 TIGR02928: orc1/cdc6 family replication initiation protein
  ------ inclusion threshold ------
      0.019   12.1  36.3      0.042   10.9  25.2    1.5  1  TIGR02794 tolA_full: protein TolA
        7.3    3.4  20.5         12    2.7  14.2    1.2  1  TIGR01554 major_cap_HK97: phage major capsid protein, HK97 family


Domain annotation for each model (and alignments):
>> TIGR02928  TIGR02928: orc1/cdc6 family replication initiation protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.0   1.4e-07   0.00019      29      76 ..     102     150 ..      98     176 .. 0.80

  Alignments for each domain:
  == domain 1    score: 18.2 bits;  conditional E-value: 1.4e-07
    TIGR02928  29 kalkpilrgsrpsnvliyGktGtGKtavtkkvlkeleeaaeekdvr.vs 76 
                  +a   +l++s++++v+i+G++G GKt ++k +l+ l+e ++ ++++ ++
  MMETSP1137-20121227|10336_1 102 SAYTGMLQNSHSQSVIISGESGAGKTETAKILLQYLAEVSSGSSNSdLH 150
                  567789****************************999987754333244 PP

>> TIGR02794  tolA_full: protein TolA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9  25.2   3.1e-05     0.042     150     253 ..     725     827 ..     711     882 .. 0.34

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 3.1e-05
    TIGR02794 150 ekkakeeAakkaEeeakakaaaeakkkaEaeeakkkaeaeakKakaeaeaKakae...eakaKaeae......AkaKAeaeAkaKaeaeakakakaeaerkaakqeaeladla 253
                  e++++ee+++ aE+++  ++++eak++aE+e+ + k +ae   +k+eae++ +++        a +        ++K+e+e +aK+    +a+a+ +  ++a   +a++ ++a
  MMETSP1137-20121227|10336_1 725 ERRRAEELKRLAEAKK--REEEEAKRRAEEEAEREKLAAEE-SKKKEAEEQDRQKrfqR----ARQLsferraGRKKREEE-EAKKGDGSAAAAAVATTAAA--VAADGSEVA 827
                  3333333333333333..33333333333211111222222.11112222221111111....111111122212222222.11111111111111112221..112222222 PP

>> TIGR01554  major_cap_HK97: phage major capsid protein, HK97 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7  14.2    0.0086        12      11     121 ..     728     832 ..     704     847 .. 0.45

  Alignments for each domain:
  == domain 1    score: 2.7 bits;  conditional E-value: 0.0086
    TIGR01554  11 lakelkkltedekeeeaeeekkekda.lkaeidkleaeierleea....aaeeeakeaasgeagkeeeeeeeakeeaaeafraylrrgddalaee...........akalstgtdsdgGylvPeels 121
                  +a+elk l+e++k+ee+e++++++++  ++++++ e++ +++ee+    + +++++   +++ag++++eeee                      +            ++ ++++++dg  ++P e+ 
  MMETSP1137-20121227|10336_1 728 RAEELKRLAEAKKREEEEAKRRAEEEaEREKLAAEESKKKEAEEQdrqkRFQRARQLSFERRAGRKKREEEE----------------------AkkgdgsaaaaaVATTAAAVAADGSEVAPSETY 832
                  344555555554444444444433221222222222222222222322222222222222222222222222......................123333322113333333444566666666654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1448 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       372  (0.0906875); expected 82.0 (0.02)
Passed bias filter:                      151  (0.0368113); expected 82.0 (0.02)
Passed Vit filter:                        37  (0.00901999); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.06u 0.18s 00:00:01.24 Elapsed: 00:00:01.18
# Mc/sec: 1619.66
//
Query:       MMETSP1137-20121227|10337_1  [L=326]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (326 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       291  (0.070941); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         8  (0.00195027); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.17s 00:00:00.59 Elapsed: 00:00:00.41
# Mc/sec: 1049.47
//
Query:       MMETSP1137-20121227|10338_1  [L=161]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (161 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        94  (0.0229157); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.15s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 732.77
//
Query:       MMETSP1137-20121227|10340_1  [L=142]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.2e-23   79.5   8.0    5.5e-23   79.2   5.5    1.1  1  TIGR00029 S20: ribosomal protein S20


Domain annotation for each model (and alignments):
>> TIGR00029  S20: ribosomal protein S20
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.2   5.5   1.3e-26   5.5e-23       6      85 ..      58     137 ..      54     139 .. 0.96

  Alignments for each domain:
  == domain 1    score: 79.2 bits;  conditional E-value: 1.3e-26
    TIGR00029   6 SaeKRirqnekrrlrNksyksklktliKkveasveagekdkakealkevakkidkaakkgiihkNkAarkksrlaaalkk 85 
                   a K +r+ne+rr  Nk yks++kt+iKkve sv+ g+ + a  al+ +++ idk +k  i+hkN+Aarkks+l+ ++k 
  MMETSP1137-20121227|10340_1  58 AATKPMRTNERRRAYNKMYKSEMKTMIKKVETSVATGDYAMAVPALSRAFSIIDKNVKRNIVHKNTAARKKSQLTLKVKA 137
                  6899***********************************************************************99986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (142 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       254  (0.061921); expected 82.0 (0.02)
Passed bias filter:                      137  (0.0333983); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.18u 0.17s 00:00:00.35 Elapsed: 00:00:00.30
# Mc/sec: 624.75
//
Query:       MMETSP1137-20121227|10341_1  [L=65]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (65 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        53  (0.0129205); expected 82.0 (0.02)
Passed bias filter:                       44  (0.0107265); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.12s 00:00:00.25 Elapsed: 00:00:00.26
# Mc/sec: 329.97
//
Query:       MMETSP1137-20121227|10343_1  [L=414]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (414 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       437  (0.106533); expected 82.0 (0.02)
Passed bias filter:                      133  (0.0324232); expected 82.0 (0.02)
Passed Vit filter:                        27  (0.00658216); expected 4.1 (0.001)
Passed Fwd filter:                        14  (0.00341297); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.54u 0.18s 00:00:00.72 Elapsed: 00:00:00.50
# Mc/sec: 1092.87
//
Query:       MMETSP1137-20121227|10344_1  [L=63]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (63 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        28  (0.00682594); expected 82.0 (0.02)
Passed bias filter:                       27  (0.00658216); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.13s 00:00:00.25 Elapsed: 00:00:00.34
# Mc/sec: 244.57
//
Query:       MMETSP1137-20121227|10345_1  [L=178]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (178 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        61  (0.0148708); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.14s 00:00:00.33 Elapsed: 00:00:00.34
# Mc/sec: 691.00
//
Query:       MMETSP1137-20121227|10347_1  [L=284]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (284 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       144  (0.0351048); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.14s 00:00:00.37 Elapsed: 00:00:00.45
# Mc/sec: 833.00
//
Query:       MMETSP1137-20121227|10349_1  [L=68]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (68 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        58  (0.0141394); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.13s 00:00:00.26 Elapsed: 00:00:00.26
# Mc/sec: 345.20
//
Query:       MMETSP1137-20121227|10351_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       349  (0.0850804); expected 82.0 (0.02)
Passed bias filter:                      164  (0.0399805); expected 82.0 (0.02)
Passed Vit filter:                        22  (0.00536324); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.32
# Mc/sec: 218.61
//
Query:       MMETSP1137-20121227|10352_1  [L=80]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (80 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        57  (0.0138957); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.12s 00:00:00.24 Elapsed: 00:00:00.28
# Mc/sec: 377.11
//
Query:       MMETSP1137-20121227|10353_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        27  (0.00658216); expected 82.0 (0.02)
Passed bias filter:                       26  (0.00633837); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.15s 00:00:00.26 Elapsed: 00:00:00.25
# Mc/sec: 279.82
//
Query:       MMETSP1137-20121227|10354_1  [L=91]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (91 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        71  (0.0173086); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.17s 00:00:00.33 Elapsed: 00:00:00.48
# Mc/sec: 250.23
//
Query:       MMETSP1137-20121227|10355_1  [L=260]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (260 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        62  (0.0151146); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.10s 00:00:00.32 Elapsed: 00:00:00.43
# Mc/sec: 798.07
//
Query:       MMETSP1137-20121227|10356_1  [L=214]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (214 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        44  (0.0107265); expected 82.0 (0.02)
Passed bias filter:                       40  (0.00975134); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.14s 00:00:00.33 Elapsed: 00:00:00.33
# Mc/sec: 855.93
//
Query:       MMETSP1137-20121227|10357_1  [L=168]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (168 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       168  (0.0409556); expected 82.0 (0.02)
Passed bias filter:                      139  (0.0338859); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.17s 00:00:00.38 Elapsed: 00:00:00.33
# Mc/sec: 671.94
//
Query:       MMETSP1137-20121227|10358_1  [L=328]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.8e-75  249.3   0.0    8.6e-75  249.0   0.0    1.0  1  TIGR03633 arc_protsome_A: proteasome endopeptidase complex, archaeal, alpha subunit
    1.2e-28   97.8   0.0    1.7e-28   97.3   0.0    1.1  1  TIGR03634 arc_protsome_B: proteasome endopeptidase complex, archaeal, beta subunit
    5.9e-07   27.3   0.0    9.5e-07   26.6   0.0    1.3  1  TIGR03690 20S_bact_beta: proteasome, beta subunit
    5.8e-05   20.5   0.0    0.00011   19.6   0.0    1.4  1  TIGR03691 20S_bact_alpha: proteasome, alpha subunit


Domain annotation for each model (and alignments):
>> TIGR03633  arc_protsome_A: proteasome endopeptidase complex, archaeal, alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  249.0   0.0   8.4e-78   8.6e-75       2     212 ..       7     221 ..       6     228 .. 0.97

  Alignments for each domain:
  == domain 1    score: 249.0 bits;  conditional E-value: 8.4e-78
    TIGR03633   2 aYDraitvfsPdGrlyqveYareavkrgttavGiktkegvvlivdkritsklleaesiekifkiDdhvgaataGlvaDarvlidrarveaqvnrltYdepievevlakkvadlkqqytqvGG....vrPfGvalliaGvddkearlfetdPsGalleykavaiGagrekvlellekeykedlsldeaielalkalakaleeelkaeevevavvev 212
                   YDr++  fsP+Grl+qveYa ea+k gtta+Gi t+egv+++v+kr  s+l e+ s+eki+++D+h+g+a++Gl aDar+l+d ar+eaq +r+t++ep+ ve+l+++v+dl  ++   G      rPfGvalliaG d+k++ lf+tdPsG+++ + a aiGag+e +++ l+++++++l+l+ea ++a+++l++++ee+l+a++veva+v+ 
  MMETSP1137-20121227|10358_1   7 EYDRGVNTFSPEGRLFQVEYAIEAIKIGTTAIGICTDEGVIIAVEKRLLSPLQEPGSVEKIYEVDSHIGVAMSGLSADARTLVDHARSEAQYHRFTFNEPMPVESLTQAVCDLALAFGESGEekamSRPFGVALLIAGWDHKGPCLFHTDPSGTFTRFDAKAIGAGSEGAQTALQEQFHKKLTLEEAETMAVSILKQVMEEKLDASNVEVACVKL 221
                  5*********************************************************************************************************************999644447*************************************************************************************986 PP

>> TIGR03634  arc_protsome_B: proteasome endopeptidase complex, archaeal, beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.3   0.0   1.6e-31   1.7e-28       1     167 [.      34     207 ..      34     221 .. 0.89

  Alignments for each domain:
  == domain 1    score: 97.3 bits;  conditional E-value: 1.6e-31
    TIGR03634   1 gtTtvGikvkdgvvlAadkraslgnlvasknvkKvfkiddkialtiaGsvgdaqslvrllkaeaklyelrrkkkisvkalatllsnll........ksskflpflvqllvgGvdeegpklyslDplGsiiedkytatGsGspvalgvLedeYeedlsleeakklavkaiksaieR 167
                  gtT++Gi +++gv++A +kr+ l  l +  +v+K++++d +i+++++G+ +da++lv+  + ea++ +++ +++++v++l++ +  l         ++    pf v ll++G d++gp l+  Dp+G ++  +  a G+Gs+ a + L+++++++l+leea+++av  +k  +e 
  MMETSP1137-20121227|10358_1  34 GTTAIGICTDEGVIIAVEKRL-LSPLQEPGSVEKIYEVDSHIGVAMSGLSADARTLVDHARSEAQYHRFTFNEPMPVESLTQAVCDLAlafgesgeEKAMSRPFGVALLIAGWDHKGPCLFHTDPSGTFTRFDAKAIGAGSEGAQTALQEQFHKKLTLEEAETMAVSILKQVMEE 207
                  8*******************8.778999***************************************************999998876233322211234579****************************************************************99988874 PP

>> TIGR03690  20S_bact_beta: proteasome, beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.6   0.0   9.3e-10   9.5e-07       4     171 ..      33     201 ..      30     216 .. 0.80

  Alignments for each domain:
  == domain 1    score: 26.6 bits;  conditional E-value: 9.3e-10
    TIGR03690   4 hgttivalaykgGvllaGdrratqGnliasrdvekvfkadeysavgiaGtaglavelvklfqvelehyeki..eGvpl.slegkanrlaamv.rsnlaaalq.GlavvpllvGydleaekGrifsydvvggkeeeeeyesvGsGsvfakgalkklykedlseedavrvaveal 171
                   gtt + +   +Gv++a ++r     l     vek+++ d +  v+++G ++ a  lv   + e +++     e +p+ sl+  +  la     s   +a+   + v  l++G+d++     +f  d  +g+  + + +++G+Gs  a++al+  ++++l+ e+a ++av  l
  MMETSP1137-20121227|10358_1  33 IGTTAIGICTDEGVIIAVEKRLL-SPLQEPGSVEKIYEVDSHIGVAMSGLSADARTLVDHARSEAQYHRFTfnEPMPVeSLTQAVCDLALAFgESGEEKAMSrPFGVALLIAGWDHKG--PCLFHTDP-SGTFTRFDAKAIGAGSEGAQTALQEQFHKKLTLEEAETMAVSIL 201
                  589*****************976.5788999***************************999988776554411555544566666777765524556778862577778899**9643..34666666.567889******************************99999877 PP

>> TIGR03691  20S_bact_alpha: proteasome, alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.0   1.1e-07   0.00011      18     207 ..      25     219 ..      15     225 .. 0.71

  Alignments for each domain:
  == domain 1    score: 19.6 bits;  conditional E-value: 1.1e-07
    TIGR03691  18 elarkGiargrsvvvlsyadGilfvaenp..sa.....slhkiselydriafaavGkynefenlrraGvryadvrGysydrrdvtaralanv...yaqtlGavfte..qekPyevelvvaevgeeteedqlyrltfdGsivderefvvlGGtaeqiaaalkesyeeelsladalrvavqalaaesekekrelkaaslevavl 207
                  e+a   i  g +++ + +++G+++  e    s+     s++ki e+  +i+ a  G   +  +l       a  + ++++   +   +l+++    a ++G    e   ++P+ v l +a  g +++ + l++    G+ +   +  ++G  +e  ++al+e+++++l+l++a  +av+ l++     +++l+a+++eva +
  MMETSP1137-20121227|10358_1  25 EYAIEAIKIGTTAIGICTDEGVIIAVEKRllSPlqepgSVEKIYEVDSHIGVAMSGLSADARTLVDHARSEAQYHRFTFNEP-MPVESLTQAvcdLALAFGESGEEkaMSRPFGVALLIA--GWDHKGPCLFHTDPSGTFT-RFDAKAIGAGSEGAQTALQEQFHKKLTLEEAETMAVSILKQV---MEEKLDASNVEVACV 219
                  6777777777777777777777766664311111122267777777788888888888888888777777777777777643.2223333321113555555555433568999999988..6678889999998888876.4567799********************************996...6778********986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (328 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       138  (0.0336421); expected 82.0 (0.02)
Passed bias filter:                      125  (0.0304729); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.30u 0.14s 00:00:00.44 Elapsed: 00:00:00.49
# Mc/sec: 883.52
//
Query:       MMETSP1137-20121227|10359_1  [L=419]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (419 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       125  (0.0304729); expected 82.0 (0.02)
Passed bias filter:                       99  (0.0241346); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.15s 00:00:00.44 Elapsed: 00:00:00.43
# Mc/sec: 1286.13
//
Query:       MMETSP1137-20121227|10360_1  [L=323]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.6e-21   72.7  10.5    1.1e-20   71.9   7.3    1.3  1  TIGR01622 SF-CC1: splicing factor, CC1-like family
    2.2e-12   44.7   0.1    2.2e-12   44.7   0.0    2.3  3  TIGR01628 PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family
    7.5e-09   32.7   0.0    7.5e-09   32.7   0.0    1.9  2  TIGR01645 half-pint: poly-U binding splicing factor, half-pint family
    1.9e-08   32.1   0.0    5.9e-06   23.9   0.0    2.1  2  TIGR01661 ELAV_HUD_SF: ELAV/HuD family splicing factor
    0.00012   19.7   0.0      0.049   11.1   0.0    2.2  2  TIGR01659 sex-lethal: sex-lethal family splicing factor


Domain annotation for each model (and alignments):
>> TIGR01622  SF-CC1: splicing factor, CC1-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.9   7.3   1.4e-23   1.1e-20      60     313 ..      54     302 ..      27     320 .. 0.73

  Alignments for each domain:
  == domain 1    score: 71.9 bits;  conditional E-value: 1.4e-23
    TIGR01622  60 rdrerrsrkrreserererekerrredevr....rkrkeredrrerrekeerlke.elteeeR.DartvfvlqlalklreRdlkEFFskvgkvrdvrlikDrnSrrSkGvaYvEFydvesvqlAlaltGqkllgvPvivqaseAEKNraakaatelsgdipnsiadlkLYvGnlhfnitEqeLrqiFepFGeielvqlqkDpetGrskGyGFiqFsdaeeakeAleklNG.lelAGReikvglasDvteesdaslaskfed 313
                  + r+ +++k+r+++  r+re   + e +      r++ ++ ++r  ++ke  l++ e ++ +R  +  vfv  la    e dl   F++ g+v +v ++     +r kG a+v F+  + v +Al+l+G +l g+ ++vq+ +      ++  +e+s +   + + + ++vGn+     E  Lr+ F   G+i+ v+l    ++ r     Fi F++a+ a +A  kl G + l G  ++vg++     + +  +  +++d
  MMETSP1137-20121227|10360_1  54 QKRKAKEKKERKRKERRQREAALKAEAKATgllpRQSAQEPSKRASKKKE-TLPNlEQAPFKRkGKNRVFVGHLAQSTSEDDL---FQHCGQVVEVDMLYRTSTGRFKGSAFVAFKSAKNVLAALKLNGTMLEGKQIVVQPEQHSAPESVAPHKEKSPTLA-AKSSRSVFVGNVPAGADERGLRNTFRECGPIQRVKLLPAVKGIRP---AFIDFREAKAAEDAV-KLDGkFALNGNALQVGYSMR---KAAPLSSRRSQD 302
                  33444444444444444443333222222211113444555556555553.44331444445515778********9999886...9********************************************************999998888888886555.678899******************************988877554...7********999996.79999************443...222222333443 PP

>> TIGR01628  PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   4.7      0.79   6.5e+02     448     502 ..      24      83 ..       2     113 .. 0.25
   2 !   15.7   6.5   1.7e-06    0.0014     251     359 ..      84     189 ..      25     194 .. 0.85
   3 !   44.7   0.0   2.7e-15   2.2e-12      82     275 ..     113     310 ..     105     318 .. 0.77

  Alignments for each domain:
  == domain 1    score: -3.0 bits;  conditional E-value: 0.79
    TIGR01628 448 qlaqqrlqaqgr...rnl.nnr..nrnvlgnmnkkqqnaaskanqanvkaqpqaqsknqmq 502
                    + + +q+++    r+l  n+  n+++ +++++k++++ +++ ++  + +   + +++ +
  MMETSP1137-20121227|10360_1  24 SAVCNASQSSDSxanRKLsSNGvpNESM-EIQKRKAKEKKERKRKERRQREAALKAEAKAT 83 
                  2222222222221111110111111111.11111111111111111111111111111111 PP

  == domain 2    score: 15.7 bits;  conditional E-value: 1.7e-06
    TIGR01628 251 kilyVgraqkraeReaelkakfeelkqerkekaqgvNlYvkNlddtvddekLrelFeefGeitSakvmld.ekekSkgFGFVcfssqeeAnkAvtelhgkilngkPLyva 359
                    l  + aq+ ++R    k+   +l+q  ++++  + ++v  l ++  + +   lF+++G+++ + ++    +++ kg  FV+f+s+++  +A++ l+g++l+gk + v 
  MMETSP1137-20121227|10360_1  84 GLLPRQSAQEPSKRASKKKETLPNLEQAPFKRKGKNRVFVGHLAQSTSEDD---LFQHCGQVVEVDMLYRtSTGRFKGSAFVAFKSAKNVLAALK-LNGTMLEGKQIVVQ 189
                  45666789999999999999999999999988888889**99999988876...5999****9999887658999*************9999986.9******9988875 PP

  == domain 3    score: 44.7 bits;  conditional E-value: 2.7e-15
    TIGR01628  82 slRksGvgNifvKnLdksidnkaLfdtFskfGnilsckvat.deeGkSkgYgfvhfedeesAkeAieklNgvllndkevyvgkfikksere.........atkekkftNlYvKnlddsvtedklrelFakfGeitSaivkkdeknrkrgfafvnyekaedAkkAveelngkkitlaatgkilyVgraqkra.....eReaelkakfeel 275
                   + + G+  +fv  L +s  +    d+F++ G+++ + +     +G+ kg +fv f+  +   +A+ klNg++l+ k+++v++ ++   +          +  +k    ++v n+++  +e  lr++F + G i  ++     k+     af+ + +a +A+ Av +l+gk      +g+ l Vg   ++a     +R +  +++++e+
  MMETSP1137-20121227|10360_1 113 FK-RKGKNRVFVGHLAQSTSE---DDLFQHCGQVVEVDMLYrTSTGRFKGSAFVAFKSAKNVLAAL-KLNGTMLEGKQIVVQPEQHSAPESvaphkekspTLAAKSSRSVFVGNVPAGADERGLRNTFRECGPIQRVKLLPAVKGIR--PAFIDFREAKAAEDAV-KLDGKFAL---NGNALQVGYSMRKAaplssRRSQDARKRRREK 310
                  44.56999*******999766...6899*********98752679***********9988888776.8*************9876655554555555555445556679**************************999998888876..8**************9.68888655...78888888776665122213333333333333 PP

>> TIGR01645  half-pint: poly-U binding splicing factor, half-pint family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   1.5      0.18   1.4e+02     420     471 ..      20      71 ..       2     110 .. 0.63
   2 !   32.7   0.0   9.1e-12   7.5e-09     109     284 ..     121     295 ..     118     303 .. 0.82

  Alignments for each domain:
  == domain 1    score: -1.3 bits;  conditional E-value: 0.18
    TIGR01645 420 galddtlalkepskeaasslalaaaakakeaaaalllenkkkkkekeeeelq 471
                   al+++++ +  s ++ +   l+++   +e    +  ++k kk+ k++e+ q
  MMETSP1137-20121227|10360_1  20 HALVSAVCNASQSSDSXANRKLSSNGVPNESMEIQKRKAKEKKERKRKERRQ 71 
                  4566666666666666666677766665555555444444444444444333 PP

  == domain 2    score: 32.7 bits;  conditional E-value: 9.1e-12
    TIGR01645 109 v.vGsisfelkedtlrrafdPfGPiksinmsWdpvtqkhkgfafveevPeaallaleqmngallGGrnlkvg.....rPsnlpqaqpiidevqeeakkfnri.vasvhpdlseedlksvfeafGeivkcklaraptlrkhkGfGflefenlqsqseaiasmnlfdlGGqllrvGkavtPPdal 284
                  v vG +     ed l   f+  G +  ++m + + t++ kg afv        la  ++ng++l G+ + v+      P+ ++  ++   ++   ak+   + v  v     e  l+  f   G+i++ kl   p+ ++ +   f++f ++++ ++a+     f l G  l+vG ++    +l
  MMETSP1137-20121227|10360_1 121 VfVGHLAQSTSEDDL---FQHCGQVVEVDMLYRTSTGRFKGSAFVAFKSAKNVLAALKLNGTMLEGKQIVVQpeqhsAPESVAPHKEKSPTL--AAKSSRSVfVGNVPAGADERGLRNTFRECGPIQRVKLL--PAVKGIRP-AFIDFREAKAAEDAVKLDGKFALNGNALQVGYSMRKAAPL 295
                  556666666666655...88899***********************9999999****************99866655555554444443333..3455444559***********************99986..77888898.9******************************998777766 PP

>> TIGR01661  ELAV_HUD_SF: ELAV/HuD family splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.9   0.0   7.2e-09   5.9e-06     212     342 ..      62     188 ..       5     197 .. 0.67
   2 !    6.5   0.0    0.0014       1.1     262     348 ..     209     291 ..     189     294 .. 0.76

  Alignments for each domain:
  == domain 1    score: 23.9 bits;  conditional E-value: 7.2e-09
    TIGR01661 212 aakfrlsaldflavlakrlqqhavaqqaaaqrasplaadgavaglaagaqiaasdgagycifvynlspdtdeavlqlfgpfGavqsvkiirdlttnkckGygfvsmtnydeaalailslnGytlgnrvlqv 342
                   ++ r +  +  a l  + +   + ++++aq+ s  a++ +  +l + +q + +      +fv  l+  t e    lf   G v++v ++   +t + kG +fv+    ++ +la l lnG+ l ++ + v
  MMETSP1137-20121227|10360_1  62 KERKRKERRQREAALKAEAKATGLLPRQSAQEPSKRASKKKE-TLPNLEQAPFKRKGKNRVFVGHLAQSTSED--DLFQHCGQVVEVDMLYRTSTGRFKGSAFVAFKSAKN-VLAALKLNGTMLEGKQIVV 188
                  223333333444444334444445555666666777666655.67777777777777889********99997..6899**************************998766.556667******9997655 PP

  == domain 2    score: 6.5 bits;  conditional E-value: 0.0014
    TIGR01661 262 iaasdgagycifvynlspdtdeavl.qlfgpfGavqsvkiirdlttnkckGygfvsmtnydeaalailslnGytlgnrvlqvsfktnk 348
                  +aa   +   +fv n+ + +de  l   f + G +q vk++  +   k    +f+   + + a  a++    + l +  lqv +   k
  MMETSP1137-20121227|10360_1 209 LAA--KSSRSVFVGNVPAGADERGLrNTFRECGPIQRVKLLPAV---KGIRPAFIDFREAKAAEDAVKLDGKFALNGNALQVGYSMRK 291
                  444..345789***********999789************9888...33445898888888888888755557899999999877666 PP

>> TIGR01659  sex-lethal: sex-lethal family splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.1   0.0   5.9e-05     0.049     197     262 ..     122     183 ..     116     199 .. 0.77
   2 !    6.4   0.0    0.0016       1.3     105     183 ..     212     287 ..     197     294 .. 0.80

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 5.9e-05
    TIGR01659 197 yvtnlprtitddqldtifgkygsivqknilrdkltgkprgvafvrfnkreeaqeaisalnnvipeg 262
                  +v  l+++ ++d    +f + g++v+ ++l    tg+ +g afv f   ++   a+  ln  + eg
  MMETSP1137-20121227|10360_1 122 FVGHLAQSTSED---DLFQHCGQVVEVDMLYRTSTGRFKGSAFVAFKSAKNVLAAL-KLNGTMLEG 183
                  566666666555...46999**************************8766655554.356666665 PP

  == domain 2    score: 6.4 bits;  conditional E-value: 0.0016
    TIGR01659 105 asgtnlivnylpqdmtdrelyalfrtigpintcrimrdyktgysfgyafvdfaseadsqraikslngitvrnkrlkvsy 183
                  +s+  + v  +p    +r l   fr  gpi+  +++   k       af+df     +  a+k     ++    l+v y
  MMETSP1137-20121227|10360_1 212 KSSRSVFVGNVPAGADERGLRNTFRECGPIQRVKLLPAVKG---IRPAFIDFREAKAAEDAVKLDGKFALNGNALQVGY 287
                  45667788999************************999885...56799999988888888885555555556666666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (323 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       212  (0.0516821); expected 82.0 (0.02)
Passed bias filter:                      115  (0.0280351); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.42u 0.14s 00:00:00.56 Elapsed: 00:00:00.56
# Mc/sec: 747.94
//
Query:       MMETSP1137-20121227|10361_1  [L=121]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00051   15.7   2.7    0.00051   15.7   1.9    1.0  1  TIGR02168 SMC_prok_B: chromosome segregation protein SMC
     0.0018   13.8   3.0     0.0022   13.5   2.1    1.0  1  TIGR02169 SMC_prok_A: chromosome segregation protein SMC
     0.0033   15.2   1.4      0.004   14.9   0.5    1.6  1  TIGR02209 ftsL_broad: cell division protein FtsL
  ------ inclusion threshold ------
      0.016   12.3   0.7      0.016   12.3   0.5    1.0  1  TIGR03752 conj_TIGR03752: integrating conjugative element protein, PFL_4705 family
      0.018   11.6   0.6      0.017   11.6   0.4    1.1  1  TIGR02231 TIGR02231: conserved hypothetical protein


Domain annotation for each model (and alignments):
>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   1.9   6.2e-07   0.00051     384     748 ..      45     116 ..      13     120 .. 0.50

  Alignments for each domain:
  == domain 1    score: 15.7 bits;  conditional E-value: 6.2e-07
    TIGR02168 384 lrsevaeleeqlaslnaelerleaeleqleerrerlkqeieelekkleeaeaelkelqeeleeleeeleeleeelerleealeeleeeleeaeqalqkaeeelaqlqarlesleslqenleglsegvkallknksklagilgvlselieveekyeaAieaalgerlqavvveneeaakkaiealkknelGrvtflpldvikgaeieaseaevlkseegvlgvakdlvkvdeklekalealLggvlvvddldsAlelakklraeerivtldGelvrrggvitggsektessilerkkeieeleeeieeleekiaelekelkelekeleeleeeleklrkeleelerklselkkelerlekeveqle 748
                  +  e+ael++q+++ + + ++l ++l  l ++re+l++e+ +l++ ++e++a +++++  le                                                                                                                                                                                                                                                                                                      l +++eqle
  MMETSP1137-20121227|10361_1  45 QHGELAELRQQVRAMERRHSQLISQLATLHAEREQLQAENGSLRAMASEFSAMREQHAIALEM-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LGEKEEQLE 116
                  333444444444444444444444444444444444444444444444444433333333333.....................................................................................................................................................................................................................................................................................................333333333 PP

>> TIGR02169  SMC_prok_A: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   2.1   2.7e-06    0.0022     855     930 ..      40     115 ..      28     119 .. 0.63

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 2.7e-06
    TIGR02169 855 keieelkakleeleeeleeleaavreLeeelkdLkkereeleaelrelekkkeeleaeiekkrkrlkelkakleal 930
                  ++ + ++++l+el+++++ +e +  +L ++l+ L++ere+l+ae   l+    e +a  e++   l+ l +k e+l
  MMETSP1137-20121227|10361_1  40 AADDPQHGELAELRQQVRAMERRHSQLISQLATLHAEREQLQAENGSLRAMASEFSAMREQHAIALEMLGEKEEQL 115
                  4455566677777777777777777777777777777777777777777777777666666655555555554443 PP

>> TIGR02209  ftsL_broad: cell division protein FtsL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.5   4.9e-06     0.004      25      57 ..      62      94 ..      56     111 .. 0.85

  Alignments for each domain:
  == domain 1    score: 14.9 bits;  conditional E-value: 4.9e-06
    TIGR02209 25 qtrqlnselqklqaeieklqkewndLqlEvael 57
                 +  ql+s+l++l ae+e+lq+e+++L++  +e 
  MMETSP1137-20121227|10361_1 62 RHSQLISQLATLHAEREQLQAENGSLRAMASEF 94
                 5579**********************9866665 PP

>> TIGR03752  conj_TIGR03752: integrating conjugative element protein, PFL_4705 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.5   1.9e-05     0.016      52     127 ..      40     114 ..       5     120 .. 0.70

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 1.9e-05
    TIGR03752  52 iegdtpedtlrtlvaelkelrkelaklekeNeklkkenerlkkreesvderiqqaleaekkelkkekeqlkeeqak 127
                  ++ d ++  l+ l  ++++++++ ++l+++  +l++e e+l++++ s++  ++++++a +++ + + e l e+ ++
  MMETSP1137-20121227|10361_1  40 AADDPQHGELAELRQQVRAMERRHSQLISQLATLHAEREQLQAENGSLRA-MASEFSAMREQHAIALEMLGEKEEQ 114
                  33455556899********************************9998875.5566777666666655555555554 PP

>> TIGR02231  TIGR02231: conserved hypothetical protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.4   2.1e-05     0.017     133     188 ..      43      97 ..       9     115 .. 0.79

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 2.1e-05
    TIGR02231 133 dfaeseieklleedreveakirelekklselenelralltekeqrskkvlvtleat 188
                  d ++ e+++l++++r +e+++ +l  +l+ l++e+++l+ e++ + + +  +++a+
  MMETSP1137-20121227|10361_1  43 DPQHGELAELRQQVRAMERRHSQLISQLATLHAEREQLQAENG-SLRAMASEFSAM 97 
                  557789999**************************99999443.333344455555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (121 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       239  (0.0582643); expected 82.0 (0.02)
Passed bias filter:                      169  (0.0411994); expected 82.0 (0.02)
Passed Vit filter:                        31  (0.00755729); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.22u 0.18s 00:00:00.40 Elapsed: 00:00:00.28
# Mc/sec: 550.71
//
Query:       MMETSP1137-20121227|10362_1  [L=232]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (232 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        69  (0.0168211); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.16s 00:00:00.35 Elapsed: 00:00:00.31
# Mc/sec: 987.79
//
Query:       MMETSP1137-20121227|10363_1  [L=424]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.2e-11   39.6   0.0    1.2e-10   38.9   0.0    1.3  1  TIGR01140 L_thr_O3P_dcar: threonine-phosphate decarboxylase
    1.9e-10   38.0   0.0    2.9e-10   37.4   0.0    1.2  1  TIGR01141 hisC: histidinol-phosphate transaminase
    6.6e-07   26.3   0.0    9.2e-07   25.9   0.0    1.1  1  TIGR03947 viomycin_VioD: capreomycidine synthase
    1.6e-06   25.2   0.0    1.9e-06   25.0   0.0    1.1  1  TIGR01265 tyr_nico_aTase: tyrosine/nicotianamine aminotransferases
     0.0002   18.2   0.0    0.00026   17.9   0.0    1.2  1  TIGR03542 DAPAT_plant: LL-diaminopimelate aminotransferase


Domain annotation for each model (and alignments):
>> TIGR01140  L_thr_O3P_dcar: threonine-phosphate decarboxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.9   0.0   1.4e-13   1.2e-10      63     207 ..     113     278 ..     101     295 .. 0.79

  Alignments for each domain:
  == domain 1    score: 38.9 bits;  conditional E-value: 1.4e-13
    TIGR01140  63 ldaesvlavnGaqeaiql.lprllapkrv.lvlaptyseyaralraagaevvels.........dleelaael....eeadllvvvnPnNPtGrllekeellalaerlkarggllvvDEAFidftpae.slaalaea.....lpglvVlrSltKffglaGlRlGfv 207
                  ++a + l + Ga  +      r l++++v  v  pt+ ++   +++ag+ev+++          d++ + a++    e    ++ +  +NPtG   ++e+ +++ e+l ar + ++vD A+  f   + ++ + a +      + l++ +S+ K fgl G R+G +
  MMETSP1137-20121227|10363_1 113 VAAVQTLSGTGACRIAAEfYSRFLPKGTVaYVSDPTWPNHIPIFQQAGFEVRKYRyldrktnrlDFDGMLADIadapEGSIFVMHACAHNPTGVDPTPEQWKKISEALTARDAKVLVDMAYQGFASGDaEADNAALRllvadGHPLLLAQSFAKNFGLYGERVGAL 278
                  5566777777877665543678899999978899*********************9******99666666666552255555555567*********************************9998876444444333556568899******************86 PP

>> TIGR01141  hisC: histidinol-phosphate transaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.4   0.0   3.5e-13   2.9e-10      70     224 ..     113     280 ..      96     309 .. 0.82

  Alignments for each domain:
  == domain 1    score: 37.4 bits;  conditional E-value: 3.5e-13
    TIGR01141  70 veeenillgnGsdelielliraflepgdavlvleptysmYevsakiagaevkevplked..gqedleavleaakekvk.lvfl..asPnnPtGnllkreeiekvleev.e.dalVVvDeAYieFsee......asvlellaeypnlvvlrTlSKafgLAglRvGyaia 224
                  v + + l g G+  +   +   fl +g+ ++v++pt+  +  + ++ag ev+++++ +   ++ d++ +l+++++ ++  +f+  a  +nPtG   + e+ +k+ e+  + da V+vD AY  F++       a    l+a+   l+  +++ K fgL g RvG + +
  MMETSP1137-20121227|10363_1 113 VAAVQTLSGTGACRIAAEFYSRFLPKGTVAYVSDPTWPNHIPIFQQAGFEVRKYRYLDRktNRLDFDGMLADIADAPEgSIFVmhACAHNPTGVDPTPEQWKKISEALtArDAKVLVDMAYQGFASGdaeadnAALRLLVADGHPLLLAQSFAKNFGLYGERVGALSV 280
                  55667778889988888999999999****************************98877787888888888555554434555224469*****************99767**************98888764444456788889*******************8644 PP

>> TIGR03947  viomycin_VioD: capreomycidine synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.9   0.0   1.1e-09   9.2e-07      96     244 ..     142     298 ..     116     321 .. 0.81

  Alignments for each domain:
  == domain 1    score: 25.9 bits;  conditional E-value: 1.1e-09
    TIGR03947  96 vvvvdpayhslselavalgakvrrwplaaerdfrpdlddlralvtdrtr...lvvvnfPhnPtGasvderelsellelaaesgavllWdaafadlv.....ydaeplpepsaaadrvisfgtlskafGlpGlrvGWcvaPkdllaelvrlrdyltls 244
                    v dp++ +   + + +g +vr+++ +  +  r d d + a ++d ++    v+    hnPtG+  ++++ +++ e  ++ +a +l d a++ ++      d+ +l    a+    +    ++k fGl G rvG   +  + +ae +r+  +l l 
  MMETSP1137-20121227|10363_1 142 AYVSDPTWPNHIPIFQQAGFEVRKYRYLDRKTNRLDFDGMLADIADAPEgsiFVMHACAHNPTGVDPTPEQWKKISEALTARDAKVLVDMAYQGFAsgdaeADNAALRLLVADGHPLLLAQSFAKNFGLYGERVGALSVVCEDAAEAARVSSQLKLI 298
                  568888888888899999**********9*********988877776643224555679******************************9987665211115667788888888889999***************8666666677888887777665 PP

>> TIGR01265  tyr_nico_aTase: tyrosine/nicotianamine aminotransferases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.0   0.0   2.3e-09   1.9e-06      61     305 ..      75     333 ..      27     390 .. 0.67

  Alignments for each domain:
  == domain 1    score: 25.0 bits;  conditional E-value: 2.3e-09
    TIGR01265  61 vrsgkfngYapsvGvlaareavaeylskeleakleaddvvl..tsG....csqaielviealanaganiLvPrPgfplYetlakalglevrkydllpekdweidldel.ealaDektvalvvinPs..nPcGsvfsrdHlekvvevaeklklliiaDEvYdklvfgd..atfvplakl.askvPvlslggiskrwlvPGWrlGWlivvdpkgiledtvlqglkkllqlildpatlvqgAl..pdilek..tpkeffekkik 305
                  ++ g+   Ya  +G++a  +   e+   + +a l ++ v    t      c  a e+  +    +g    v  P++p+   + ++ g evrky  l  k  ++d+d++ + +aD     + v+  +  nP+G   + +  +k+ e  +     ++ D  Y+ ++ gd  a   +l  l a+  P+l  ++ +k++   G r+G l vv +       v++ lk +++ +  +   + gAl   ++l++    ++++++  +
  MMETSP1137-20121227|10363_1  75 LERGEKKEYAGIAGIPAFVDRALEFAYGKDNAVLLEKRVAAvqTLSgtgaCRIAAEFYSR-FLPKGTVAYVSDPTWPNHIPIFQQAGFEVRKYRYLDRKTNRLDFDGMlADIADAPEGSIFVMHACahNPTGVDPTPEQWKKISEALTARDAKVLVDMAYQGFASGDaeADNAALRLLvADGHPLLLAQSFAKNFGLYGERVGALSVVCEDAAEAARVSSQLKLIIRXMYSSP-PIHGALlvAEVLNDpeLSAQYYKECES 333
                  556666666666666666666666665444444444444221122201113333333332.235677888999*********************************8637799998888888765444*****************99999999*************93333445544426788********************997776555555556777766665554443.344443224555431133566665544 PP

>> TIGR03542  DAPAT_plant: LL-diaminopimelate aminotransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.0   3.1e-07   0.00026     114     266 ..     134     287 ..      81     353 .. 0.76

  Alignments for each domain:
  == domain 1    score: 17.9 bits;  conditional E-value: 3.1e-07
    TIGR03542 114 lfgsdktva.vqdPvyPvyvdsavlaGragvldddgkykkivylp.ctkenefiPelpeekkvdiiyl.CsPnnPtGtvltkeqlkelvdyakendslilfdaayeafis.dpslPksiyeiegakeca.ieirsfsktlGftGvrlg.ytvvPkelkv 266
                   f ++ tva v+dP++P ++ + + aG      + +ky+ +   +  ++ ++++ ++++ ++  i+++     nPtG   t eq k++ +  +++d+ +l d ay+ f s d +  ++   +  a     +  +sf+k+ G+ G r+g ++vv ++   
  MMETSP1137-20121227|10363_1 134 RFLPKGTVAyVSDPTWPNHIPIFQQAGF-----EVRKYRYLDRKTnRLDFDGMLADIADAPEGSIFVMhACAHNPTGVDPTPEQWKKISEALTARDAKVLVDMAYQGFASgDAEADNAALRLLVADGHPlLLAQSFAKNFGLYGERVGaLSVVCEDAAE 287
                  4555555554889999988888887777.....55566665543303455667777777776666554233579**********************************98345667777777766654415569************9637888887654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (424 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       163  (0.0397367); expected 82.0 (0.02)
Passed bias filter:                      150  (0.0365675); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.36u 0.15s 00:00:00.51 Elapsed: 00:00:00.54
# Mc/sec: 1036.36
//
Query:       MMETSP1137-20121227|10364_1  [L=255]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (255 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        38  (0.00926377); expected 82.0 (0.02)
Passed bias filter:                       35  (0.00853242); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.15s 00:00:00.35 Elapsed: 00:00:00.35
# Mc/sec: 961.63
//
Query:       MMETSP1137-20121227|10365_1  [L=343]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (343 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       147  (0.0358362); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.15s 00:00:00.40 Elapsed: 00:00:00.31
# Mc/sec: 1460.40
//
Query:       MMETSP1137-20121227|10366_1  [L=203]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      6e-11   40.4   0.1    8.5e-11   39.9   0.1    1.2  1  TIGR01044 rplV_bact: ribosomal protein L22
    3.2e-05   21.8   0.3    7.3e-05   20.6   0.2    1.6  1  TIGR01038 L22_arch: ribosomal protein L22


Domain annotation for each model (and alignments):
>> TIGR01044  rplV_bact: ribosomal protein L22
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.9   0.1   4.1e-14   8.5e-11       4     103 .]      45     143 ..      42     143 .. 0.95

  Alignments for each domain:
  == domain 1    score: 39.9 bits;  conditional E-value: 4.1e-14
    TIGR01044   4 rtvrisprkarlvidlirGkevaealdiLeftpkkaaelvekvlksaianaehnneldadelvvakvfvdeGPtlkrirprakGrasrirkrtshitvvv 103
                  r  +i prk   +++l+      ea++ +ef  k+ a  v+  ++ a+  a  +n+ld + lvv ++ v++G  lk i  +akG++   +k  sh+++vv
  MMETSP1137-20121227|10366_1  45 RDLQIQPRKLLDLANLVPRLYWREAMAQMEFNRKTNAIYVKNCIEKAVKKA-IDNGLDKERLVVDQAIVGKGSHLKGIDIKAKGKTGIKKKYFSHLMIVV 143
                  677899999999*****999*******************************.6779*****************************9999999******98 PP

>> TIGR01038  L22_arch: ribosomal protein L22
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   0.2   3.6e-08   7.3e-05      82     147 ..      80     145 ..      66     146 .. 0.93

  Alignments for each domain:
  == domain 1    score: 20.6 bits;  conditional E-value: 3.6e-08
    TIGR01038  82 aakailklLknaeanAeakgLdvekLkiiHiqankgpvlrrympRAfGRatprnsstthielvvee 147
                   a ++++ +++a   A   gLd e+L++  + + kg  l++   +A G+   +++  +h+ +vv+e
  MMETSP1137-20121227|10366_1  80 NAIYVKNCIEKAVKKAIDNGLDKERLVVDQAIVGKGSHLKGIDIKAKGKTGIKKKYFSHLMIVVRE 145
                  477999**********************************************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (203 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       168  (0.0409556); expected 82.0 (0.02)
Passed bias filter:                      132  (0.0321794); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.21u 0.14s 00:00:00.35 Elapsed: 00:00:00.34
# Mc/sec: 788.05
//
Query:       MMETSP1137-20121227|10367_1  [L=168]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.2e-35  121.4   0.0    1.4e-35  121.2   0.0    1.1  1  TIGR02349 DnaJ_bact: chaperone protein DnaJ
      1e-22   78.2   2.5    1.3e-22   77.9   1.7    1.0  1  TIGR03835 termin_org_DnaJ: terminal organelle assembly protein TopJ
    2.8e-05   22.1   0.4    4.4e-05   21.5   0.3    1.2  1  TIGR00714 hscB: Fe-S protein assembly co-chaperone HscB


Domain annotation for each model (and alignments):
>> TIGR02349  DnaJ_bact: chaperone protein DnaJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  121.2   0.0   9.9e-39   1.4e-35       2     105 ..      37     140 ..      36     160 .. 0.82

  Alignments for each domain:
  == domain 1    score: 121.2 bits;  conditional E-value: 9.9e-39
    TIGR02349   2 YYeiLgvskdAseeeikkAYrklakkyHPDrnkg.ekeaeekfkeineAyevLsdeekraqYDqfghagleggaggggagfegfeasefgdigdifeeffggggg 105
                  YYe+Lgvsk+A+++e+kkAYrk+a k+HPD+n++ +++ae+kfke++eAyevLsd +kra YD+ g+agl++g+ggg +gf g  +    d +++f ++f++++g
  MMETSP1137-20121227|10367_1  37 YYEVLGVSKNADADELKKAYRKQAIKWHPDKNPDnREAAEKKFKEVAEAYEVLSDANKRAVYDRHGEAGLKRGGGGGPSGFGGGFNG-GVDPNELFAQMFSAAMG 140
                  *********************************944567899******************************999988887775442.33344556665555443 PP

>> TIGR03835  termin_org_DnaJ: terminal organelle assembly protein TopJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.9   1.7   9.3e-26   1.3e-22       4      74 ..      37     109 ..      34     112 .. 0.94

  Alignments for each domain:
  == domain 1    score: 77.9 bits;  conditional E-value: 9.3e-26
    TIGR03835   4 yyevLgidrDadeqeikkafrkLakkyhPDrnka..adaakifaeineandvLsnPkkraryDkyGhDGvDre 74 
                  yyevLg++++ad +e+kka+rk a k+hPD+n +    a+k f+e+ ea++vLs+ +kra yD++G  G+ r 
  MMETSP1137-20121227|10367_1  37 YYEVLGVSKNADADELKKAYRKQAIKWHPDKNPDnrEAAEKKFKEVAEAYEVLSDANKRAVYDRHGEAGLKRG 109
                  ********************************997567899****************************9875 PP

>> TIGR00714  hscB: Fe-S protein assembly co-chaperone HscB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.5   0.3   3.3e-08   4.4e-05       4      56 ..      48      98 ..      46      99 .. 0.93

  Alignments for each domain:
  == domain 1    score: 21.5 bits;  conditional E-value: 3.3e-08
    TIGR00714  4 DekaLrkryrklQkqyHPDvsksaqeqaaalqqStelNqAykTLkdplkRaey 56
                 D + L+k yrk   ++HPD  k+  ++ aa ++  e+ +Ay+ L d+ kRa y
  MMETSP1137-20121227|10367_1 48 DADELKKAYRKQAIKWHPD--KNPDNREAAEKKFKEVAEAYEVLSDANKRAVY 98
                 7889***************..8888888999*******************977 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (168 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       171  (0.041687); expected 82.0 (0.02)
Passed bias filter:                      145  (0.0353486); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.22u 0.16s 00:00:00.38 Elapsed: 00:00:00.41
# Mc/sec: 540.83
//
Query:       MMETSP1137-20121227|10368_1  [L=524]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (524 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       130  (0.0316919); expected 82.0 (0.02)
Passed bias filter:                       97  (0.023647); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.14s 00:00:00.49 Elapsed: 00:00:00.49
# Mc/sec: 1411.48
//
Query:       MMETSP1137-20121227|10369_1  [L=408]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (408 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       155  (0.0377864); expected 82.0 (0.02)
Passed bias filter:                      115  (0.0280351); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.15s 00:00:00.47 Elapsed: 00:00:00.45
# Mc/sec: 1196.70
//
Query:       MMETSP1137-20121227|10370_1  [L=230]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0002   18.8   0.1    0.00026   18.4   0.1    1.1  1  TIGR02069 cyanophycinase: cyanophycinase
  ------ inclusion threshold ------
       0.01   12.5   0.1      0.017   11.8   0.0    1.4  2  TIGR01373 soxB: sarcosine oxidase, beta subunit family


Domain annotation for each model (and alignments):
>> TIGR02069  cyanophycinase: cyanophycinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.1   1.3e-07   0.00026      39     131 ..      51     142 ..      18     160 .. 0.85

  Alignments for each domain:
  == domain 1    score: 18.4 bits;  conditional E-value: 1.3e-07
    TIGR02069  39 eepeevgeaykeifkrlgvkevkildvkeRedaskeeeiallskadgifftGGDqlRitsllkdtpllarlrkrvkeGiilgGtsaGaavmsd 131
                  ++++ v+ + k+i  r+++ +v+++d ++  +++ e ++a+l+  ++++   G+   +   l ++  ++ +++ ++ G++++G saG  v + 
  MMETSP1137-20121227|10370_1  51 ANSRVVASMSKQIADRFSISDVAVIDPEHVRHDELERQVAQLR-PNVVYAEMGNTYALRHHLRNSGGDTLVHNAMRAGALFVGSSAGSIVAGR 142
                  456788999999****************999999999999996.689****************************************988765 PP

>> TIGR01373  soxB: sarcosine oxidase, beta subunit family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   8.4e-06     0.017      48     111 ..      62     125 ..      50     146 .. 0.92
   2 ?   -4.0   0.0       0.5     1e+03      16      39 ..     193     216 ..     187     221 .. 0.71

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 8.4e-06
    TIGR01373  48 ylakehGitnvavlekgwlGgGnvgrnttivrsnylydesaelyelalklweGlskdlnynvml 111
                   +a+ + i++vav++ +++   +  r  + +r n +y e  + y l ++l +   + l +n+m 
  MMETSP1137-20121227|10370_1  62 QIADRFSISDVAVIDPEHVRHDELERQVAQLRPNVVYAEMGNTYALRHHLRNSGGDTLVHNAMR 125
                  57999*********************************************99999999999995 PP

  == domain 2    score: -4.0 bits;  conditional E-value: 0.5
    TIGR01373  16 kdwkeawrspepkpeydviivGgG 39 
                    w++a  + +  + ++vii+  G
  MMETSP1137-20121227|10370_1 193 ATWQKAQAERHGHTDHEVIILADG 216
                  568888888888888888887655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (230 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       119  (0.0290102); expected 82.0 (0.02)
Passed bias filter:                      108  (0.0263286); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.22u 0.19s 00:00:00.41 Elapsed: 00:00:00.35
# Mc/sec: 867.36
//
Query:       MMETSP1137-20121227|10371_1  [L=85]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (85 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        68  (0.0165773); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:00.49
# Mc/sec: 228.96
//
Query:       MMETSP1137-20121227|10372_1  [L=273]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.06    8.9   0.0      0.084    8.4   0.0    1.2  1  TIGR00845 caca: sodium/calcium exchanger 1


Domain annotation for each model (and alignments):
>> TIGR00845  caca: sodium/calcium exchanger 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   0.0     2e-05     0.084     684     744 ..      60     124 ..      57     146 .. 0.79

  Alignments for each domain:
  == domain 1    score: 8.4 bits;  conditional E-value: 2e-05
    TIGR00845 684 alvvGtsswreqfiealtvsagddddddedg..eekl...PscfdyvmhfltvfwkvlfafvPPtd 744
                  a vvG+s+w+ +   a+ + a++++ d +     +k+   Psc++ + h+  + + ++f ++ P +
  MMETSP1137-20121227|10372_1  60 AXVVGSSAWQSKSTGAVSLLAAEQQRDPDRLeySDKIilpPSCLEKLAHL-EISYPMMFEIINPRQ 124
                  679*******************9877776652333434559*******95.788899999998865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (273 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        74  (0.01804); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.23u 0.17s 00:00:00.40 Elapsed: 00:00:00.40
# Mc/sec: 900.83
//
Query:       MMETSP1137-20121227|10373_1  [L=260]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (260 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        78  (0.0190151); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.14s 00:00:00.36 Elapsed: 00:00:00.51
# Mc/sec: 672.89
//
Query:       MMETSP1137-20121227|10374_1  [L=489]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.2e-08   31.0   0.0    1.8e-08   30.5   0.0    1.2  1  TIGR03903 TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
  ------ inclusion threshold ------
      0.028   11.7   0.0      0.046   11.0   0.0    1.3  1  TIGR03724 arch_bud32: Kae1-associated kinase Bud32


Domain annotation for each model (and alignments):
>> TIGR03903  TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.5   0.0   8.7e-12   1.8e-08      97     233 ..     309     441 ..     292     445 .. 0.72

  Alignments for each domain:
  == domain 1    score: 30.5 bits;  conditional E-value: 8.7e-12
    TIGR03903  97 daGvvhRDLkPqnimvsaadveshakvLDFGigaLlpgvedadeatltrttevlGsPaYaaPeqLRgepvtaksDlYaWGLivleCLtGkrvvqGas.vaev..lykqLsPvdvsl.Ps...aiaghpLgevLRkalnkdvrqR 233
                  d  v+h DLkP+ni++ ++ ++s  k++DFG +      +d   +t      ++ s  Y +Pe L g +  +  D+++ G i++e  tG++   G     ++  +y  L+P +  +  s   +++    + vLR+ l  +++ R
  MMETSP1137-20121227|10374_1 309 DVAVIHCDLKPENILLKNS-KRSAIKLIDFGSSC----RRD---QT---VYSYIQSRFYRSPEVLLGCAYSPMIDMWSLGCILVEMHTGEPLFSGHDeYDQIikIYELLGPPPAHMiASgtkSLKYSAATYVLREGLAEQAKPR 441
                  6689***********9765.68899******765....334...22...346999****************************************7614566334788888765431330003333334456666666666655 PP

>> TIGR03724  arch_bud32: Kae1-associated kinase Bud32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   2.2e-05     0.046     106     140 ..     307     344 ..     279     350 .. 0.80

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 2.2e-05
    TIGR03724 106 lHkagivhgDlttsNiivk...ddklyliDfGLgkksk 140
                  l +  ++h Dl ++Ni++k    + + liDfG + +++
  MMETSP1137-20121227|10374_1 307 LDDVAVIHCDLKPENILLKnskRSAIKLIDFGSSCRRD 344
                  556789************733345688*****876655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (489 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       116  (0.0282789); expected 82.0 (0.02)
Passed bias filter:                      106  (0.0258411); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.37u 0.14s 00:00:00.51 Elapsed: 00:00:00.51
# Mc/sec: 1265.54
//
Query:       MMETSP1137-20121227|10375_1  [L=496]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.9e-12   44.0   1.2    8.2e-11   39.2   1.0    2.0  2  TIGR01679 bact_FAD_ox: FAD-linked oxidoreductase
    1.1e-11   42.2   0.2    3.5e-10   37.2   0.2    2.0  2  TIGR01678 FAD_lactone_ox: sugar 1,4-lactone oxidases
    3.5e-06   23.9   0.0      5e-06   23.4   0.0    1.1  1  TIGR01676 GLDHase: galactonolactone dehydrogenase
     0.0028   14.4   1.9      0.008   12.9   1.1    1.8  2  TIGR00387 glcD: glycolate oxidase, subunit GlcD


Domain annotation for each model (and alignments):
>> TIGR01679  bact_FAD_ox: FAD-linked oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.2   1.0     8e-14   8.2e-11      13     174 ..      70     232 ..      64     236 .. 0.79
   2 ?    2.4   0.0     0.012        12     356     414 ..     430     490 ..     419     495 .. 0.78

  Alignments for each domain:
  == domain 1    score: 39.2 bits;  conditional E-value: 8e-14
    TIGR01679  13 aaivaPkdegeladvvkvaakp...vravGsGhsftdlaktdGtlvsleklegvvdvdqqkdeatvkaGtrlgalgpllaekgrglenlgdidkqsigGalgtathGtGvklqalha.rvvslrlvtasGkvldlseaddqeiflaarvslGalGvisqvtlrtva 174
                  ++ v P+   ++   v+ a  +     +vG Gh    l  t G l+++ +l   v+vd   +++t ++G  +g++   la k  g+       +q   Ga+    +G+  k   l+  +vv+ ++vt +G++l++++  d e+f   r +   lGv++++t+r  +
  MMETSP1137-20121227|10375_1  70 TILVLPAIVEDVQVSVRYAYDQsldFGVVGGGHGVGGLGHTSGLLIDMSGLTA-VSVDTAAGLTTYQTGNNIGTVD--LASKESGVYSPNGNCPQVGVGAVLHGGYGAMTKTRGLSIdNVVAYQVVTRTGELLSVTAESDSELFWGLRGAASMLGVVTEITIRHFP 232
                  5556666666666666666665556789***********************86.79*****************986..66666666544444455555666666666666666665415899***************************************99865 PP

  == domain 2    score: 2.4 bits;  conditional E-value: 0.012
    TIGR01679 356 eslfraveeifrryeGrPh.WGklhslkaadlkelyP.rWddflavrddldPearflnpyl 414
                   +l ra+ee + + +  Ph +    + +aa++++ +  + +++l++++ ldP + f   y 
  MMETSP1137-20121227|10375_1 430 DALHRAIEEAVGEQDLSPHgYLNWGMNEAAHIRKAFGdNLERLLELKQALDPTNFFHRTYD 490
                  56789999999999999985233346789999999862689*************9988885 PP

>> TIGR01678  FAD_lactone_ox: sugar 1,4-lactone oxidases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.2   0.2   3.4e-13   3.5e-10      15     181 ..      69     233 ..      64     275 .. 0.92
   2 !    2.9   0.0    0.0088         9     385     436 ..     434     486 ..     424     488 .. 0.83

  Alignments for each domain:
  == domain 1    score: 37.2 bits;  conditional E-value: 3.4e-13
    TIGR01678  15 peryfqPksveevrellksareaekklkvvGsGhsPsdivvtdgylvsldklnkvlkfdeekaditveaGirlyqlneildekGyslsnlGsisevsvaGiistgthgsslkhgllssqvvaltivladGellelseerdkdvfkaarvslGalGiivsvtirvvPa 181
                  p  +  P  ve+v+  +  a  +     vvG+Gh    +  t+g l+++  l  v ++d      t ++G  +  ++   +e G   +n G   +v v  ++  g    +   gl   +vva ++v+  Gell + +e d+++f   r    +lG++ ++tir  P 
  MMETSP1137-20121227|10375_1  69 PTILVLPAIVEDVQVSVRYAYDQSLDFGVVGGGHGVGGLGHTSGLLIDMSGLTAV-SVDTAAGLTTYQTGNNIGTVDLASKESGVYSPN-GNCPQVGVGAVLHGGYGAMTKTRGLSIDNVVAYQVVTRTGELLSVTAESDSELFWGLRGAASMLGVVTEITIRHFPV 233
                  66788999********************************************976.799999999************9999*9987776.9***********999999999999999**********************************************9885 PP

  == domain 2    score: 2.9 bits;  conditional E-value: 0.0088
    TIGR01678 385 kafedimkkagGkPhWakefsvkkekdyeeey.edlkkflkirkkldPkgvfl 436
                  +a+e+ + + +  Ph   ++ + +   + + + ++l++ l++++ ldP++ f 
  MMETSP1137-20121227|10375_1 434 RAIEEAVGEQDLSPHGYLNWGMNEAAHIRKAFgDNLERLLELKQALDPTNFFH 486
                  6677777777778898888888888888888989****************996 PP

>> TIGR01676  GLDHase: galactonolactone dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.4   0.0   4.8e-09     5e-06      66     224 ..      73     229 ..      55     248 .. 0.88

  Alignments for each domain:
  == domain 1    score: 23.4 bits;  conditional E-value: 4.8e-09
    TIGR01676  66 lqpedleeleqvvktanekkarvrpvgsglspngiglsrlgmvnlalmdkvlevdkekkrvrvqagirvqqlvdaikeygltlqnfasireqqiggivqvgahgtgaklppid.eqviamklvtpakgtieiskekdpelfylarcglgglgvvaevtlq 224
                    p  +e+++  v+ a ++      vg g    g+g +   +++++ +  v  vd      + q+g  +  +  a ke g+   n     +  + g v  g +g+ +k   +  ++v+a ++vt +   + ++ e d elf+  r     lgvv+e+t++
  MMETSP1137-20121227|10375_1  73 VLPAIVEDVQVSVRYAYDQSLDFGVVGGGHGVGGLGHTSGLLIDMSGLTAV-SVDTAAGLTTYQTGNNIGTVDLASKESGVYSPNGNC-PQVGV-GAVLHGGYGAMTKTRGLSiDNVVAYQVVTRTGELLSVTAESDSELFWGLRGAASMLGVVTEITIR 229
                  5688899999999**************************99****999765.89***************99999*******9988654.33344.56667888988887765435799****************************************86 PP

>> TIGR00387  glcD: glycolate oxidase, subunit GlcD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.9   1.1   7.8e-06     0.008       2     171 ..      73     231 ..      72     251 .. 0.78
   2 ?   -0.9   0.0      0.12   1.2e+02     390     408 ..     466     484 ..     442     486 .. 0.80

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 7.8e-06
    TIGR00387   2 vlPknteqvarilklCserrikvvprGagtglsGgalpeegglvlvfkrlnkileideenltavvqPGvinkeleeaveeknlfyppDPssqkastiGGniaenaGGlrglkYGvtvdyvlglevvladGeilriggktvkdvaGydltkLlvgsEGtLgivteiilkll 171
                  vlP   e+v   +++ +++ + +   G g g+ G  l +  gl++ ++ l  +  +d+     + q G  + ++  a +e +  y+p+     +  +G  +  + G + +   G+  d+v++ +vv+  Ge+l      v   +  +l   l g+  +Lg+vtei+++  
  MMETSP1137-20121227|10375_1  73 VLPAIVEDVQVSVRYAYDQSLDFGVVGGGHGVGG--LGHTSGLLIDMSGLTAV-SVDTAAGLTTYQTGNNIGTVDLASKESGV-YSPNGN-CPQVGVGAVLHGGYGAM-TKTRGLSIDNVVAYQVVTRTGELLS-----VTAESDSELFWGLRGAASMLGVVTEITIRHF 231
                  7899999999999999999999999999988755..66777788778888765.7999999999****999998887766665.555543.34456665555555555.6667********************9.....344444567777889999*********9865 PP

  == domain 2    score: -0.9 bits;  conditional E-value: 0.12
    TIGR00387 390 ekeleimravkkafdPkni 408
                   ++le + ++k+a+dP n 
  MMETSP1137-20121227|10375_1 466 GDNLERLLELKQALDPTNF 484
                  4689999*********996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (496 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        92  (0.0224281); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.37u 0.14s 00:00:00.51 Elapsed: 00:00:00.69
# Mc/sec: 948.79
//
Query:       MMETSP1137-20121227|10376_1  [L=320]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (320 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       105  (0.0255973); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.15s 00:00:00.41 Elapsed: 00:00:00.38
# Mc/sec: 1111.49
//
Query:       MMETSP1137-20121227|10378_1  [L=400]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (400 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        94  (0.0229157); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.15s 00:00:00.44 Elapsed: 00:00:00.41
# Mc/sec: 1287.70
//
Query:       MMETSP1137-20121227|10379_1  [L=288]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.8e-87  288.2   0.1    1.1e-86  287.8   0.1    1.1  1  TIGR00628 ung: uracil-DNA glycosylase


Domain annotation for each model (and alignments):
>> TIGR00628  ung: uracil-DNA glycosylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  287.8   0.1   2.8e-90   1.1e-86       3     209 ..      70     276 ..      68     277 .. 0.99

  Alignments for each domain:
  == domain 1    score: 287.8 bits;  conditional E-value: 2.8e-90
    TIGR00628   3 sWkellkeelkkpylkellkelkeerkeeevyPkkedvfawtrltkpedvkvvilGQDPYhgpgqahGLaFsvkkevkippsLknifkelkkelpevespkhglLekWaeqGvLLLNtvLtvekgqaasHkklgWekftkavisllsekkeklvfllwgakaqkkkslidkkkhlvlksaHPSplsakrFlgckhFkkaneylekkg 209
                   W+++l +e+++py+++l++++++er+++ v+Pk++dvfa++++t+++dv+vvilGQDPYh+ gqahGL+Fsv+++v++ppsLkni+kelk+++p +  p+hg Le+Wa+qGvLLLN++Ltv++++a+sH+++gW++ft+a i++++++ +++vf+lwg  aqkk +++++++h+vlk+aHPSpls ++Flgc++F++an+yle kg
  MMETSP1137-20121227|10379_1  70 GWRAALASEFSRPYFTSLVSKVNAERSQASVFPKETDVFAAFNMTALSDVRVVILGQDPYHNVGQAHGLSFSVQHGVQVPPSLKNIYKELKTDIPGFIIPSHGNLESWARQGVLLLNATLTVRAHNANSHQDFGWQQFTDAAIRVINQNCKNVVFILWGGFAQKKGKIVAADRHCVLKAAHPSPLSVTKFLGCRVFSQANTYLEAKG 276
                  7**********************************************************************************************************************************************************************************************************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (288 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        97  (0.023647); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.22u 0.14s 00:00:00.36 Elapsed: 00:00:00.37
# Mc/sec: 1027.37
//
Query:       MMETSP1137-20121227|10380_1  [L=121]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (121 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        73  (0.0177962); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.13s 00:00:00.29 Elapsed: 00:00:00.31
# Mc/sec: 515.18
//
Query:       MMETSP1137-20121227|10381_1  [L=168]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.33    8.4   6.9       0.82    7.1   4.8    1.6  1  TIGR03363 VI_chp_8: type VI secretion-associated protein, ImpA family


Domain annotation for each model (and alignments):
>> TIGR03363  VI_chp_8: type VI secretion-associated protein, ImpA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   4.8    0.0002      0.82     192     285 ..      17     111 ..       1     132 [. 0.66

  Alignments for each domain:
  == domain 1    score: 7.1 bits;  conditional E-value: 0.0002
    TIGR03363 192 tskdflqakaealeaalealqalealvderlGsa.apslsplrkaLqallrlverlakdkgleaeeapaaaadaaedeetgeaataeasaepasa 285
                    +  ++++ae +  a++ l +++ ++++ l s+ ap++ +  +  qa   ++++   +k +e+++ap  a da + +++ +a+ ++a+a+p++a
  MMETSP1137-20121227|10381_1  17 LRAIVAAKTAEVAPFAARILAHVDGTLETNLSSKvAPKTTASFSFAQATGSSMSEACDEKQAEKQNAPSTADDARNSDVRAPASSSAAAAGPSTA 111
                  22233334444444455556667777777777777888888888888888888888888877788888888888888888888888887777554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (168 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       204  (0.0497318); expected 82.0 (0.02)
Passed bias filter:                      127  (0.0309605); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.21u 0.13s 00:00:00.34 Elapsed: 00:00:00.51
# Mc/sec: 434.79
//
Query:       MMETSP1137-20121227|10382_1  [L=394]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.9e-60  202.0   0.2    2.3e-60  201.7   0.1    1.1  1  TIGR03633 arc_protsome_A: proteasome endopeptidase complex, archaeal, alpha subunit
    7.2e-19   65.9   0.2    9.6e-19   65.5   0.1    1.1  1  TIGR03634 arc_protsome_B: proteasome endopeptidase complex, archaeal, beta subunit


Domain annotation for each model (and alignments):
>> TIGR03633  arc_protsome_A: proteasome endopeptidase complex, archaeal, alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  201.7   0.1   1.1e-63   2.3e-60       3     229 ..      47     274 ..      45     275 .. 0.95

  Alignments for each domain:
  == domain 1    score: 201.7 bits;  conditional E-value: 1.1e-63
    TIGR03633   3 YDraitvfsPdGrlyqveYareavkrgttavGiktkegvvlivdkritsklleaesiekifkiDdhvgaataGlvaDarvlidrarveaqvnrltYdepievevlakkvadlkqqytqvGGvrPfGvalliaGvddkearlfetdPsGalleykavaiGagrekvlellekeyke..dlsldeaielalkalakale..eelkaeevevavveveekkfrklskeevekll 229
                  YD     +sP Gr++q+eYa eavk+g++a+G+++++  ++++ kr ts+l + +  +kifkiD+h+g+a aGlvaDarvl  + r+e   +r++Y++p++v  l+ +vad  q  tq  G rP+Gv ll+aGvd+++++l+et+PsG+++e+   aiGa +++  ++lek++++  +lsld  ie al al ++l    el++++v va+v+v++  f+ l+++ ++ ++
  MMETSP1137-20121227|10382_1  47 YDTDCITWSPAGRIHQIEYAMEAVKQGSAAIGLRSNKYALVATLKRSTSELSSYQ--KKIFKIDEHIGIAIAGLVADARVLAKYMRTECINHRYVYEQPMQVGRLVTQVADKSQLGTQRIGSRPYGVGLLVAGVDQTGPHLYETQPSGQYFEFLGNAIGARSQAGRTYLEKHFESfaELSLDALIEHALLALRETLAtgVELTSNNVAVAYVSVDD-DFTILEDDLIKPYV 274
                  9999999*******************************************97665..7*******************************************************************************************************************95559****************997558999***********65.79999998888776 PP

>> TIGR03634  arc_protsome_B: proteasome endopeptidase complex, archaeal, beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.5   0.1   4.7e-22   9.6e-19       1     181 [.      73     257 ..      73     261 .. 0.84

  Alignments for each domain:
  == domain 1    score: 65.5 bits;  conditional E-value: 4.7e-22
    TIGR03634   1 gtTtvGikvkdgvvlAadkraslgnlvasknvkKvfkiddkialtiaGsvgdaqslvrllkaeaklyelrrkkkisvkalatll...snllkss.kflpflvqllvgGvdeegpklyslDplGsiiedkytatGsGspvalgvLedeYee..dlsleeakklavkaiksaieRDv.asGdgidvvvit 181
                  g+ ++G++ ++  ++A+ kr + +   +s   kK+fkid++i+++iaG+v+da+ l++++++e+   +   +++++v  l t +   s+l +++    p+ v llv+Gvd++gp+ly   p+G + e    a G+ s+   + Le+++e+  +lsl+  ++ a+ a++ +++  v  + +++ v+ ++
  MMETSP1137-20121227|10382_1  73 GSAAIGLRSNKYALVATLKRSTSE---LSSYQKKIFKIDEHIGIAIAGLVADARVLAKYMRTECINHRYVYEQPMQVGRLVTQVadkSQLGTQRiGSRPYGVGLLVAGVDQTGPHLYETQPSGQYFEFLGNAIGARSQAGRTYLEKHFESfaELSLDALIEHALLALRETLATGVeLTSNNVAVAYVS 257
                  5679****************9987...577889*******************************999999999**99888777622233433333568**************************************************9544899999999999999887766542466666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (394 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       115  (0.0280351); expected 82.0 (0.02)
Passed bias filter:                       99  (0.0241346); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.30u 0.18s 00:00:00.48 Elapsed: 00:00:00.54
# Mc/sec: 963.03
//
Query:       MMETSP1137-20121227|10384_1  [L=336]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (336 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       105  (0.0255973); expected 82.0 (0.02)
Passed bias filter:                      104  (0.0253535); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.13s 00:00:00.39 Elapsed: 00:00:00.46
# Mc/sec: 964.09
//
Query:       MMETSP1137-20121227|10385_1  [L=563]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (563 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       262  (0.0638713); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.15s 00:00:00.54 Elapsed: 00:00:00.60
# Mc/sec: 1238.50
//
Query:       MMETSP1137-20121227|10386_1  [L=275]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (275 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        37  (0.00901999); expected 82.0 (0.02)
Passed bias filter:                       37  (0.00901999); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.13s 00:00:00.34 Elapsed: 00:00:00.34
# Mc/sec: 1067.56
//
Query:       MMETSP1137-20121227|10387_1  [L=227]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.04   11.9   0.0      0.091   10.7   0.0    1.6  2  TIGR02802 Pal_lipo: peptidoglycan-associated lipoprotein


Domain annotation for each model (and alignments):
>> TIGR02802  Pal_lipo: peptidoglycan-associated lipoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0       0.6   2.5e+03      74      88 ..       9      23 ..       5      28 .. 0.69
   2 ?   10.7   0.0   2.2e-05     0.091      34      86 ..     129     183 ..     113     194 .. 0.82

  Alignments for each domain:
  == domain 1    score: -3.5 bits;  conditional E-value: 0.6
    TIGR02802 74 levvSyGkekPvalg 88
                 + +  y +++P++++
  MMETSP1137-20121227|10387_1  9 MATQTYSNKQPKCVQ 23
                 667778888887765 PP

  == domain 2    score: 10.7 bits;  conditional E-value: 2.2e-05
    TIGR02802  34 vlieGhaDerGtrEYNlaLGerR..akavkeylvakGvsasqlevvSyGkekPva 86 
                    +eGh Der  +E  +a+ +rR  +k+++  l++   ++  l++  + ++ P++
  MMETSP1137-20121227|10387_1 129 AAVEGHPDERLKQEVKIAIIQRRhfSKSIRPSLELLCLDNPTLKLDGWQEKMPAD 183
                  679********************55688999998888888888877777777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (227 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        65  (0.0158459); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.21u 0.17s 00:00:00.38 Elapsed: 00:00:00.49
# Mc/sec: 611.46
//
Query:       MMETSP1137-20121227|10388_1  [L=222]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (222 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       109  (0.0265724); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.12s 00:00:00.32 Elapsed: 00:00:00.33
# Mc/sec: 887.93
//
Query:       MMETSP1137-20121227|10389_1  [L=236]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00034   17.8   7.1    0.00055   17.1   4.9    1.3  1  TIGR00599 rad18: DNA repair protein rad18
  ------ inclusion threshold ------
       0.62    7.2   3.5       0.92    6.6   2.4    1.3  1  TIGR00570 cdk7: CDK-activating kinase assembly factor MAT1


Domain annotation for each model (and alignments):
>> TIGR00599  rad18: DNA repair protein rad18
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   4.9   2.7e-07   0.00055      41      67 ..      17      43 ..       4      48 .. 0.88

  Alignments for each domain:
  == domain 1    score: 17.1 bits;  conditional E-value: 2.7e-07
    TIGR00599 41 ltsCsHtFCslCiRrcLseepkCPlCr 67
                  t C+H FC  Ci r+  + p+CP+Cr
  MMETSP1137-20121227|10389_1 17 ATECGHKFCRACIERWTAVRPNCPMCR 43
                 599***********************9 PP

>> TIGR00570  cdk7: CDK-activating kinase assembly factor MAT1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   2.4   0.00045      0.92      24      51 ..      18      44 ..       1      55 [. 0.72

  Alignments for each domain:
  == domain 1    score: 6.6 bits;  conditional E-value: 0.00045
    TIGR00570 24 nvCghtlCesCvdllfvrGsgsCpeCdt 51
                  +Cgh++C +C+++       +Cp C +
  MMETSP1137-20121227|10389_1 18 TECGHKFCRACIERWTA-VRPNCPMCRR 44
                 59***********9654.5569999975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (236 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        68  (0.0165773); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.21u 0.11s 00:00:00.32 Elapsed: 00:00:00.38
# Mc/sec: 819.72
//
Query:       MMETSP1137-20121227|10390_1  [L=382]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.047   11.4   0.0       0.13   10.0   0.0    1.6  2  TIGR00324 endA: tRNA intron endonuclease


Domain annotation for each model (and alignments):
>> TIGR00324  endA: tRNA intron endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0      0.26   1.1e+03      29      59 ..     175     201 ..     168     219 .. 0.72
   2 ?   10.0   0.0   3.1e-05      0.13      80     106 ..     257     283 ..     237     284 .. 0.86

  Alignments for each domain:
  == domain 1    score: -2.8 bits;  conditional E-value: 0.26
    TIGR00324  29 gnledesldlsliEslylldlgamflklkll 59 
                  + +  + l lsl E+  ll  g     l+ll
  MMETSP1137-20121227|10390_1 175 QGEAADWLLLSLCEAYHLLAAG----RLRLL 201
                  5556677789999999999988....55554 PP

  == domain 2    score: 10.0 bits;  conditional E-value: 3.1e-05
    TIGR00324  80 derslvrkYlvYkdlrerGyvvktGik 106
                    +++  +Y  Y+ lr  G+ +++Gi+
  MMETSP1137-20121227|10390_1 257 ASQRFPFEYAAYRSLRGEGWLLRAGIQ 283
                  56788899*****************85 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (382 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       234  (0.0570453); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.31u 0.15s 00:00:00.46 Elapsed: 00:00:00.35
# Mc/sec: 1440.57
//
Query:       MMETSP1137-20121227|10391_1  [L=267]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (267 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        94  (0.0229157); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.12s 00:00:00.32 Elapsed: 00:00:00.38
# Mc/sec: 927.40
//
Query:       MMETSP1137-20121227|10392_1  [L=460]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.5e-17   61.6  17.0      2e-17   61.2  11.8    1.1  1  TIGR00813 sss: transporter, solute:sodium symporter (SSS) family
    5.3e-17   59.5  15.5    6.4e-17   59.2  10.7    1.0  1  TIGR02121 Na_Pro_sym: sodium/proline symporter
    1.8e-16   57.5  14.8    4.5e-10   36.4   0.4    2.2  2  TIGR03648 Na_symport_lg: probable sodium:solute symporter, VC_2705 subfamily
      1e-13   49.0   7.6    1.3e-13   48.7   5.2    1.1  1  TIGR02119 panF: sodium/pantothenate symporter


Domain annotation for each model (and alignments):
>> TIGR00813  sss: transporter, solute:sodium symporter (SSS) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.2  11.8     2e-20     2e-17      28     408 ..       2     368 ..       1     376 [. 0.79

  Alignments for each domain:
  == domain 1    score: 61.2 bits;  conditional E-value: 2e-20
    TIGR00813  28 lGlpgeayasG...laiiflelaalvllivlgllfvpvyikagvltmpeylekRFgkrilrilsvlililviflkisvdlfsgalllelvlGl..dlylsllllalitilYtviGGlkAvvwtDtlqavimivgvlilpvvafsevgglesvvekakqaaptvvs..vddllkleldpltsdlpwgalvfGliivallywcldqvivqRllaaksaksakkgvlisgvlkllpmllavlpGliaralytdvdpalagavqqasdqaypllvvellp....pglaglflav.llaAvlStlssilnsastvfteDlYkkiirkaaekekkivsrgrvavlvaiviaivvaaaqsgqvlqlvqsafgilgapllavfvLglfwkrvnakGAlvgl 408
                  +G+p ea+++G   l  i  +l +++ ++ ++     + + ++ ++  ++++ RF ++ lr+ +++il++ ++++++++ +     +++++Gl  +   + +++ ++++++  iGGl++v++tD+ q+++mi+++++++    +  gg +s +   k+  +  +s  +  +++ ++   +  l w   ++ l++             qR++a+ + ks+k +  +  +   l ml+ v+ G +++ l +           q++   +   v el++      +agl++ v  +aA++St++s+l+++  +++  + ++ +++a+   +++  +++v+ + ++++++v+a+   g + +l +  +g+   ++ ++++  +f +r +  + ++++
  MMETSP1137-20121227|10392_1   2 VGVPNEAFTDGykaLRWIPSKLFMAFGYMCTSPRLRRISLIRHYHSPLDFITDRFRSQFLRYSIFVILLVPSIIYLAAQPITLKGNFNDLFGLedNNVIAPVAICAFILVLEWIGGLNVVAYTDSAQGILMILAFVLMSSTLCHLYGGWGSDIFNPKTYPK--PSffQVPSTEDQVAMWSFSLQW-ISFAALPHF-----------QQRTYASGEFKSMKLAYFVISLAPWLTMLVGVFSGTLGVYLLQG----------QETSNPFTGVVAELMGasgfGYVAGLLILVgSVAAIISTADSLLIATTHMVMSEVVNPNMKNASH--ARVSFVSKVVSFTVMALGLVIALTDDGALSDLAAVQNGMCLQAVPTLLIGLFFAPRYTPHAWIIAV 368
                  899999999996665555555555556666666566666677888999*******************************9999999*******4435666788888999999************************************7776666666544..1122333444444444444444.444445555...........8*****************************************86..........233344555666777765556677776665268************************99988877..99999**********************************999876555544556888876655554 PP

>> TIGR02121  Na_Pro_sym: sodium/proline symporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.2  10.7   6.3e-20   6.4e-17      58     442 ..       2     389 ..       1     413 [. 0.81

  Alignments for each domain:
  == domain 1    score: 59.2 bits;  conditional E-value: 6.3e-20
    TIGR02121  58 lGlPGalyvtGlsel.wiaiGlliGayinwklvakrlrvytevakdaitlPdflekrledkskvlrivsaliilvfftlytssGlvaGgklfesafGldyklalligali..vviytflGGflavswtdlvqgllmlvalvlvPivallklggls.eileaveaidpekldllkgasviaiisl.laWGlGyfGqPhiivrfmaiksakelkkarligisWmilsllGavlvglvGiayvekvpgvevadk..ekifillskvlfnPliaGl.llaailaaimstissqllvsssalaedlykallkkeasekelvlvgrlsvlvvaiiaivlalnpdssvlelvsyaWaGfGaafgpvvllslywk.r......ltragalagmvigavtvivwkeakl 442
                  +G+P   ++ G ++l wi   l +     ++  ++rlr  + +++    l df+++r+   s++lr    +i+lv  ++y ++  ++    f+  fGl+ +  +  +a++  +++  ++GG   v++td  qg+lm++a+vl+     +  gg++ +i++  +  +p+ +++ +  + +a+ s  l W + +   Ph   r  a  + k++k a ++      l++l  v+ g +G+  ++ +   e++++    +  l+    f  ++aGl +l   +aai+st +s l+ ++  ++ ++    +k +as+  +  v+++  + v+ + +v+al+ d  + +l +    G+     p +l+ l++  r      +   galag+v++ v+   w+e + 
  MMETSP1137-20121227|10392_1   2 VGVPNEAFTDGYKALrWIPSKLFMA--FGYMCTSPRLRRISLIRHYHSPL-DFITDRFR--SQFLRYSIFVILLVPSIIYLAAQPITLKGNFNDLFGLEDNNVIAPVAICafILVLEWIGGLNVVAYTDSAQGILMILAFVLMSSTLCHLYGGWGsDIFNPKTYPKPSFFQVPSTEDQVAMWSFsLQW-ISFAALPHFQQRTYASGEFKSMKLAYFVISLAPWLTMLVGVFSGTLGVYLLQGQ---ETSNPftGVVAELMGASGFG-YVAGLlILVGSVAAIISTADSLLIATTHMVMSEVVNPNMK-NASHARVSFVSKVVSFTVMALGLVIALTDDGALSDLAAV-QNGMCLQAVPTLLIGLFFApRytphawIIAVGALAGFVTTVVINYTWNEKED 389
                  7999999999998865888887764..47999*********777665554.9******6..78999877777788899********9999********98877655554422566789***************************999999999725788888899********99999999852666.8999*********************998877778999999*******9888876...44444415555556666665.66775168899**********9999999999999887665.678888999*******************99999998765.6899999999999999975231222224567888888888888888877544 PP

>> TIGR03648  Na_symport_lg: probable sodium:solute symporter, VC_2705 subfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.4   0.4   4.4e-13   4.5e-10      95     192 ..      45     145 ..      25     154 .. 0.79
   2 !   25.1   5.5   1.1e-09   1.2e-06     361     482 ..     260     382 ..     247     410 .. 0.77

  Alignments for each domain:
  == domain 1    score: 36.4 bits;  conditional E-value: 4.4e-13
    TIGR03648  95 ftvp.dfvgdRyysktaRlvaviaailisftYvvgqirgvGvvfsrflevdielgv..liglavvlvyavlgGmkgvtytqvaqyvvlivaylvpvvflsl 192
                  +  p df+ dR+ s+  R    +++++ s++Y+++q   +   f  +++++ +  +  +   a +lv   +gG+  v+yt  aq +++i+a+++    l +
  MMETSP1137-20121227|10392_1  45 YHSPlDFITDRFRSQFLRYSIFVILLVPSIIYLAAQPITLKGNFNDLFGLEDNNVIapVAICAFILVLEWIGGLNVVAYTDSAQGILMILAFVLMSSTLCH 145
                  544449**************99**************888887888887775444331145556789999************************98877765 PP

  == domain 2    score: 25.1 bits;  conditional E-value: 1.1e-09
    TIGR03648 361 vvialvaAGglaAAlstaaGLllvissaisHDllkkllnpkasekkrllvarvallvviviaaylalnkpgfiaqvvalAFglaaaslFpalvlGifwk.rankegai..agmlaGllvtllyiv 482
                  v   l+  G++aA +sta+ Ll++ +  +  ++++  + ++as+++  +v++v+ ++v+++  ++al++ g ++++ a+  g+  +++ p+l++G+f   r + ++ i  +g laG+++t++  +
  MMETSP1137-20121227|10392_1 260 VAGLLILVGSVAAIISTADSLLIATTHMVMSEVVNPNM-KNASHARVSFVSKVVSFTVMALGLVIALTDDGALSDLAAVQNGMCLQAV-PTLLIGLFFApRYTPHAWIiaVGALAGFVTTVVINY 382
                  33346889***************887666666665554.456777777899********************************98875.9*****986437777765522578889888776433 PP

>> TIGR02119  panF: sodium/pantothenate symporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.7   5.2   1.2e-16   1.3e-13     110     394 ..      49     335 ..       6     405 .. 0.81

  Alignments for each domain:
  == domain 1    score: 48.7 bits;  conditional E-value: 1.2e-16
    TIGR02119 110 vdllkaryknkllvllsslsllvfllsaivaqfiGGarllesltGlsyltal..llfslsvliyvliGGfravvltdalqgivmllgtiilliavikaggGv.ekiveklkeidpnlvtpfgadgsldkafvasfwilvgiGvvglpqiavralsykdskalhraliigtivvgilmlgmhlvGvlgravlpdlkvsd...kvipllalkvlppilaGif.laaplaaimstvdsllllssstlikdlylnylekeakekkvkkisllitlllgllvllaalkppdliiwln 394
                   d++ +r+++++l +   ++llv  +  ++aq i     ++ l Gl  ++ +  +  ++ +l+   iGG+  v+ td+ qgi+m+l+ +++  ++ +  gG   +i +  +  +p++ +  ++++++++   +  wi       +lp+   r+ +  + k+++ a  + ++   + ml   + G lg  +l + + s+    v+  l+     +++aG++ l + +aai+st dsll+ ++ +++ ++ +n   k+a++ +v+ +s ++++ + +l l++al     +  l 
  MMETSP1137-20121227|10392_1  49 LDFITDRFRSQFLRYSIFVILLVPSIIYLAAQPITLKGNFNDLFGLEDNNVIapVAICAFILVLEWIGGLNVVAYTDSAQGILMILAFVLMSSTLCHLYGGWgSDIFNPKTYPKPSFFQVPSTEDQVAMWSFSLQWI----SFAALPHFQQRTYASGEFKSMKLAYFVISLAPWLTMLVGVFSGTLGVYLLQGQETSNpftGVVAELMGASGFGYVAGLLiLVGSVAAIISTADSLLIATTHMVMSEV-VNPNMKNASHARVSFVSKVVSFTVMALGLVIALTDDGALSDLA 335
                  699***********999999999999999*******99********98776611555666788889*********************99999888888888724677777888999988777766566544455555....6679*******************9988888877888888899*********9999873335889999999*******8527899***********999888777776.899999******************9999999998766555444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (460 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       170  (0.0414432); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.37u 0.16s 00:00:00.53 Elapsed: 00:00:00.67
# Mc/sec: 906.19
//
Query:       MMETSP1137-20121227|10393_1  [L=152]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.12   10.8   4.2       0.64    8.4   2.4    2.0  2  TIGR03601 B_an_ocin: probable heterocycle-containing bacteriocin, BA_2677 family


Domain annotation for each model (and alignments):
>> TIGR03601  B_an_ocin: probable heterocycle-containing bacteriocin, BA_2677 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.0     0.031   1.3e+02       7      30 ..      10      33 ..       5      52 .. 0.82
   2 ?    8.4   2.4   0.00016      0.64      23      66 ..     106     150 ..      97     152 .] 0.81

  Alignments for each domain:
  == domain 1    score: 1.0 bits;  conditional E-value: 0.031
    TIGR03601  7 elqslslndyqsgnvvywdqqnqy 30
                  l+ l+l+d  +g  + w +q ++
  MMETSP1137-20121227|10393_1 10 SLERLQLKDLAPGGGLLWGRQYEF 33
                 688899*******99999987655 PP

  == domain 2    score: 8.4 bits;  conditional E-value: 0.00016
    TIGR03601  23 ywdqqnqypyyyied.darrcggcggcggrgggrcggcagrcigc 66 
                  y  +++ +p y +   +ar   g gg gg+    c gc     gc
  MMETSP1137-20121227|10393_1 106 YCLRDTSWPVYCMATlEARVTSGEGGLGGAQAAACSGCRVVRRGC 150
                  5556778999988754899999****************9877777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (152 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        89  (0.0216967); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.18u 0.16s 00:00:00.34 Elapsed: 00:00:00.42
# Mc/sec: 477.67
//
Query:       MMETSP1137-20121227|10394_1  [L=316]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (316 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       147  (0.0358362); expected 82.0 (0.02)
Passed bias filter:                       98  (0.0238908); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.17s 00:00:00.44 Elapsed: 00:00:00.43
# Mc/sec: 969.97
//
Query:       MMETSP1137-20121227|10395_1  [L=791]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (791 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       261  (0.0636275); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.54u 0.18s 00:00:00.72 Elapsed: 00:00:00.47
# Mc/sec: 2221.35
//
Query:       MMETSP1137-20121227|10397_1  [L=149]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (149 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        73  (0.0177962); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.13s 00:00:00.30 Elapsed: 00:00:00.30
# Mc/sec: 655.55
//
Query:       MMETSP1137-20121227|10398_1  [L=140]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (140 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        82  (0.0199902); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.13s 00:00:00.29 Elapsed: 00:00:00.28
# Mc/sec: 637.19
//
Query:       MMETSP1137-20121227|10399_1  [L=365]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (365 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        44  (0.0107265); expected 82.0 (0.02)
Passed bias filter:                       39  (0.00950756); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.16s 00:00:00.41 Elapsed: 00:00:00.34
# Mc/sec: 1416.94
//
Query:       MMETSP1137-20121227|10401_1  [L=505]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        3.5    5.3   6.4       0.46    8.2   0.3    2.2  2  TIGR02869 spore_SleB: spore cortex-lytic enzyme


Domain annotation for each model (and alignments):
>> TIGR02869  spore_SleB: spore cortex-lytic enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   0.3   0.00011      0.46     164     186 ..     160     182 ..     137     190 .. 0.84
   2 ?   -1.0   0.7      0.07   2.9e+02     163     184 ..     451     472 ..     446     474 .. 0.93

  Alignments for each domain:
  == domain 1    score: 8.2 bits;  conditional E-value: 0.00011
    TIGR02869 164 GwdPsggalyyfnpakatssWiw 186
                   +dP+ +a y++n+++   +W  
  MMETSP1137-20121227|10401_1 160 CLDPASNAYYFWNTQTNEVRWSD 182
                  57**************9999965 PP

  == domain 2    score: -1.0 bits;  conditional E-value: 0.07
    TIGR02869 163 nGwdPsggalyyfnpakatssW 184
                  +Gw    ++ yy  pa+   sW
  MMETSP1137-20121227|10401_1 451 RGWHAESNSYYYAHPATGDASW 472
                  79***************99999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (505 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        74  (0.01804); expected 82.0 (0.02)
Passed bias filter:                       41  (0.00999512); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.15s 00:00:00.48 Elapsed: 00:00:00.46
# Mc/sec: 1449.01
//
Query:       MMETSP1137-20121227|10402_1  [L=388]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (388 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       108  (0.0263286); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.17s 00:00:00.47 Elapsed: 00:00:00.44
# Mc/sec: 1163.90
//
Query:       MMETSP1137-20121227|10403_1  [L=214]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (214 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        67  (0.0163335); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.16s 00:00:00.38 Elapsed: 00:00:00.26
# Mc/sec: 1086.37
//
Query:       MMETSP1137-20121227|10404_1  [L=318]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (318 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       258  (0.0628961); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.18s 00:00:00.44 Elapsed: 00:00:00.43
# Mc/sec: 976.11
//
Query:       MMETSP1137-20121227|10405_1  [L=314]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   2.3e-103  343.3   7.0   2.6e-103  343.2   4.8    1.0  1  TIGR01692 HIBADH: 3-hydroxyisobutyrate dehydrogenase
    7.1e-55  184.1   5.2    8.9e-55  183.8   3.6    1.1  1  TIGR01505 tartro_sem_red: 2-hydroxy-3-oxopropionate reductase
    3.3e-16   57.2   0.0    4.7e-16   56.7   0.0    1.2  1  TIGR00872 gnd_rel: 6-phosphogluconate dehydrogenase (decarboxylating)
    4.9e-07   26.7   0.0    6.9e-07   26.2   0.0    1.2  1  TIGR00873 gnd: 6-phosphogluconate dehydrogenase (decarboxylating)
    9.9e-05   19.1   0.1     0.0038   13.8   0.0    2.1  2  TIGR03026 NDP-sugDHase: nucleotide sugar dehydrogenase
    0.00049   17.6   0.1    0.00089   16.8   0.0    1.4  1  TIGR00112 proC: pyrroline-5-carboxylate reductase
     0.0044   14.0   0.0     0.0075   13.2   0.0    1.5  1  TIGR03911 pyrrolys_PylD: pyrrolysine biosynthesis protein PylD
  ------ inclusion threshold ------
      0.021   11.4   0.2      0.033   10.8   0.1    1.2  1  TIGR01327 PGDH: phosphoglycerate dehydrogenase


Domain annotation for each model (and alignments):
>> TIGR01692  HIBADH: 3-hydroxyisobutyrate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  343.2   4.8  5.1e-106  2.6e-103       1     287 [.      10     304 ..      10     305 .. 0.95

  Alignments for each domain:
  == domain 1    score: 343.2 bits;  conditional E-value: 5.1e-106
    TIGR01692   1 fiGlGnmGgpmaanllkaghavrvfdlsakaveelveaGaqaaasaaeav......eeadvvitmlPagkhvesvy.agdegilakvkkksllidsstidvdsarkvaeeaaakGavfldaPvsGGvggaraGtltfmvGge.aeefaraepvleamgknivhaGdaGaGqaakiCnnlllgismiGvaealalgeklGldpkvlaeilskssGrcWsldtynPvPGvveqaPasngykgGfatalmlkdlglaqeaaksvkasvllGalarelyslfaskgagkkdfsavikll 287
                  f+GlGnmG+ maanll++g +v ++d +  a+ +l++aGaq+ +s+a +       +e+ v+i+mlP  ++v++ y ++d+ il+ v+ ++ lid+sti++  ar++a++a+a+G  f+daPvsGGv ga+a tltfmvG+  a + +ra+pvle mg++++h+Gd+G+Gqaak+ nnl+l++smiGvae + lge+lG+d+kvla i + ss rcWs+dtynP PGv++++Pa ++y+gGfa++lm kdlgla +aa++ ++ +    +a   y   a+ g g+kdfsav++ll
  MMETSP1137-20121227|10405_1  10 FVGLGNMGSRMAANLLRKGCRVVAYDTQQGAMGRLRDAGAQTVESPALVSrvlaeqTESGVLISMLPGNAQVRDAYwLADDSILSSVAAGTRLIDCSTIAPAIAREIAAKAEAAGCEFVDAPVSGGVVGAEAATLTFMVGAAtAXAVERARPVLELMGQRVLHCGDVGSGQAAKLSNNLVLAVSMIGVAEGMLLGERLGVDKKVLASIFNSSSARCWSSDTYNPCPGVMDNVPAARDYQGGFAVNLMRKDLGLALDAATASETALRAARMALSTYDEAAATGLGDKDFSAVYRLL 304
                  9********************************************98653222222466799**********998846999***********************************************************8526789*************************************************************************************************************************************************997 PP

>> TIGR01505  tartro_sem_red: 2-hydroxy-3-oxopropionate reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  183.8   3.6   1.7e-57   8.9e-55       2     285 ..       8     306 ..       7     310 .. 0.89

  Alignments for each domain:
  == domain 1    score: 183.8 bits;  conditional E-value: 1.7e-57
    TIGR01505   2 vgfiGlGimGkPmsknllkaGyqlvvatleqealdellaaGaesaetakevve......dadvivtmvPdsPqveeva.lGenGileaakkGkvlvdmssiaPleskelakavkekGidvldaPvsGGeagaiegtlsimvGGdkav.fdkvkpllealgksivlvGenGaGqtvkvanqvivalnieavsealvlaekaGvdpkavlqalrGGlagstvleakk..erlld.....rdfkPGfridlhqkdlalaldaakavgaalPvtavvaellaalradGdgtldhsalvralek 285
                  vgf+GlG mG+ m+ nll+ G ++v+ + +q a+ +l  aGa+++e+ + v++      ++ v++ m+P   qv++   l ++ il +   G+ l+d s+iaP  ++e+a ++++ G +++daPvsGG +ga  +tl+ mvG   a   ++++p+le++g+ + ++G+ G+Gq++k++n +++a+ +  v+e ++l e+ Gvd k    +++   a     ++ +  + ++d     rd++ Gf ++l +kdl+laldaa a   al  + +     +  +a G g+ d sa+ r le 
  MMETSP1137-20121227|10405_1   8 VGFVGLGNMGSRMAANLLRKGCRVVAYDTQQGAMGRLRDAGAQTVESPALVSRvlaeqtESGVLISMLPGNAQVRDAYwLADDSILSSVAAGTRLIDCSTIAPAIAREIAAKAEAAGCEFVDAPVSGGVVGAEAATLTFMVGAATAXaVERARPVLELMGQRVLHCGDVGSGQAAKLSNNLVLAVSMIGVAEGMLLGERLGVDKKVLASIFNSSSARCWSSDTYNpcPGVMDnvpaaRDYQGGFAVNLMRKDLGLALDAATASETALRAARMALSTYDEAAATGLGDKDFSAVYRLLEE 306
                  8*********************************************9665543222222578************876527999***********************************************************9998538*********************************************************9999999988654444433113344333333********************************9999********************999985 PP

>> TIGR00872  gnd_rel: 6-phosphogluconate dehydrogenase (decarboxylating)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.7   0.0   9.2e-19   4.7e-16       1     210 [.       6     220 ..       6     231 .. 0.76

  Alignments for each domain:
  == domain 1    score: 56.7 bits;  conditional E-value: 9.2e-19
    TIGR00872   1 mklgliGlGrmGaniakrlakrghevvgydrdqdaveelkedraegvanlkellkrl...saprvvwvmvpag..ivdav.l..eelapllekGdividgGnsyykdslrrekelkekgihlldvGtsGGvlGkerG.yclmiGGde.eafkkaeplfkdvaveekGylylGeaGsGhfvkmvhnGieyGlmaalaeGlevlknsqfdfdleevarvyrr 210
                  m +g++GlG mG+ +a +l  +g  vv+yd++q a+ +l++ +a+ v +   +++ l   +   v+  m+p    + da  l  + + + + +G  +id+             +   +g +++d+ +sGGv+G+e    ++m+G     a ++a p+++ +    +  l++G+ GsG  +k+  n +    m  +aeG+ + +  +   d + +a +++ 
  MMETSP1137-20121227|10405_1   6 MTVGFVGLGNMGSRMAANLLRKGCRVVAYDTQQGAMGRLRDAGAQTVESPALVSRVLaeqTESGVLISMLPGNaqVRDAYwLadDSILSSVAAGTRLIDCSTIAPAIAREIAAKAEAAGCEFVDAPVSGGVVGAEAAtLTFMVGAATaXAVERARPVLELMG---QRVLHCGDVGSGQAAKLSNNLVLAVSMIGVAEGMLLGE--RLGVDKKVLASIFNS 220
                  789************************************999888887765555555111345688889997754566652322335566789******9765554444445667789***************9975279****865278999999987555...447*******************9999*******86554..445555666666665 PP

>> TIGR00873  gnd: 6-phosphogluconate dehydrogenase (decarboxylating)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.2   0.0   1.4e-09   6.9e-07       2     217 ..       8     220 ..       7     232 .. 0.79

  Alignments for each domain:
  == domain 1    score: 26.2 bits;  conditional E-value: 1.4e-09
    TIGR00873   2 iGliGlavmGknlvlniadkGfsvavynrtkektdellkeeakgkklvgaesieefvkslekPrkilllvkaGaav.davi...eellpllekgdiiidGGnslykdterrekelkekgilfvGvGvsGGeeGarkGP.slmpGG.skeayelvepilqkiaakvegepcceyiGedGaGhyvkmvhnGieygdmqliaeayellkealklsaeeiaevfee 217
                  +G++Gl+ mG+ ++ n+ +kG  v++y+ ++  + +l  + a  +++++   +  ++++  +   ++ ++   a v da     +++l  +  g  +id        +     + +++g +fv + vsGG  Ga     + m G  ++ a e  +p+l+ +  +v       + G+ G+G   k+  n +    m  +ae+  ll e+l+++++ +a++f+ 
  MMETSP1137-20121227|10405_1   8 VGFVGLGNMGSRMAANLLRKGCRVVAYDTQQGAMGRLR-D-AGAQTVESPALVSRVLAEQTESGVLISMLPGNAQVrDAYWladDSILSSVAAGTRLIDCSTIAPAIAREIAAKAEAAGCEFVDAPVSGGVVGAEAATlTFMVGAaTAXAVERARPVLELMGQRV------LHCGDVGSGQAAKLSNNLVLAVSMIGVAEG-MLLGERLGVDKKVLASIFNS 220
                  8***************************9999888864.4.455566666666666665555555555665555565554233489*************9877777777777888999****************976537888862467999******9987665......577999999999999999999999888887.57889999999999999975 PP

>> TIGR03026  NDP-sugDHase: nucleotide sugar dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.0   7.5e-06    0.0038       1      50 [.       6      56 ..       6      80 .. 0.79
   2 ?    3.4   0.0     0.011       5.7     172     260 ..     148     237 ..      89     237 .. 0.84

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 7.5e-06
    TIGR03026  1 mkiavvGlGYvGlplaallaekgheVvgvDidkekveklnkgkspi.kepg 50
                 m++  vGlG +G  +aa l +kg +Vv  D ++    +l+    +  + p 
  MMETSP1137-20121227|10405_1  6 MTVGFVGLGNMGSRMAANLLRKGCRVVAYDTQQGAMGRLRDAGAQTvESPA 56
                 8999********************************999865544404444 PP

  == domain 2    score: 3.4 bits;  conditional E-value: 0.011
    TIGR03026 172 viGeteeaseavaelYesiiekavvlvtsietAeliKlaeNtfravkiafiNelariceklgidvkevieaagldpr..igknflrpGlGv 260
                  v+++t+ a e ++ + e +  + v++  ++ + +++Kl +N  +av +  + e   + e+lg+d k ++ ++++      + + ++p +Gv
  MMETSP1137-20121227|10405_1 148 VGAATAXAVERARPVLELMG-QRVLHCGDVGSGQAAKLSNNLVLAVSMIGVAEGMLLGERLGVDKKVLASIFNSSSArcWSSDTYNPCPGV 237
                  55577777777777776664.688889999999*************9999999999*********99999999877655677777777775 PP

>> TIGR00112  proC: pyrroline-5-carboxylate reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0   1.7e-06   0.00089       1     107 [.       8     110 ..       8     123 .. 0.79

  Alignments for each domain:
  == domain 1    score: 16.8 bits;  conditional E-value: 1.7e-06
    TIGR00112   1 iaiiGaGnmgeallsgllkkgakakkeilvierseeklaalakelgvevtsdaeeavkeadvvllavKPqdleevlaelkseektkeklliSilAGvtiekleqlle 107
                  ++++G Gnmg+ +++ ll+kg +  +       +   ++a a+++++ +  +++ a++ ++ vl+++ P +++   a +     + +++l S++AG+++ + ++ ++
  MMETSP1137-20121227|10405_1   8 VGFVGLGNMGSRMAANLLRKGCRVVAYDTQQGAMGRLRDAGAQTVESPALVSRVLAEQTESGVLISMLPGNAQVRDA-YWL---ADDSILSSVAAGTRLIDCSTIAP 110
                  68******************9886555555566677777888888888888889999999*********99874433.333...36899*******99877766655 PP

>> TIGR03911  pyrrolys_PylD: pyrrolysine biosynthesis protein PylD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   0.0   1.5e-05    0.0075     148     184 ..       8      44 ..       2     121 .. 0.87

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 1.5e-05
    TIGR03911 148 vlviGlGkvGtaaavalvkkGakvyvydkekellekl 184
                  v  +GlG++G   a+ l+ kG +v +yd+++  + +l
  MMETSP1137-20121227|10405_1   8 VGFVGLGNMGSRMAANLLRKGCRVVAYDTQQGAMGRL 44 
                  6679*************************99888766 PP

>> TIGR01327  PGDH: phosphoglycerate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.1   6.4e-05     0.033     139     168 ..       6      35 ..       3      42 .. 0.94

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 6.4e-05
    TIGR01327 139 ktlGviGlGriGsevakrakalgmkvlayD 168
                   t+G +GlG++Gs++a      g +v+ayD
  MMETSP1137-20121227|10405_1   6 MTVGFVGLGNMGSRMAANLLRKGCRVVAYD 35 
                  599**************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (314 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       183  (0.0446124); expected 82.0 (0.02)
Passed bias filter:                      121  (0.0294978); expected 82.0 (0.02)
Passed Vit filter:                        24  (0.0058508); expected 4.1 (0.001)
Passed Fwd filter:                         8  (0.00195027); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.32u 0.13s 00:00:00.45 Elapsed: 00:00:00.46
# Mc/sec: 900.97
//
Query:       MMETSP1137-20121227|10406_1  [L=155]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (155 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       130  (0.0316919); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.15s 00:00:00.32 Elapsed: 00:00:00.31
# Mc/sec: 659.95
//
Query:       MMETSP1137-20121227|10407_1  [L=44]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (44 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        45  (0.0109703); expected 82.0 (0.02)
Passed bias filter:                       42  (0.0102389); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.13s 00:00:00.23 Elapsed: 00:00:00.23
# Mc/sec: 252.50
//
Query:       MMETSP1137-20121227|10408_1  [L=243]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (243 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       223  (0.0543637); expected 82.0 (0.02)
Passed bias filter:                      118  (0.0287665); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.15s 00:00:00.38 Elapsed: 00:00:00.37
# Mc/sec: 866.85
//
Query:       MMETSP1137-20121227|10410_1  [L=331]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (331 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       393  (0.0958069); expected 82.0 (0.02)
Passed bias filter:                      147  (0.0358362); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.16s 00:00:00.44 Elapsed: 00:00:00.45
# Mc/sec: 970.85
//
Query:       MMETSP1137-20121227|10411_1  [L=261]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (261 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       127  (0.0309605); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.14s 00:00:00.37 Elapsed: 00:00:00.40
# Mc/sec: 861.23
//
Query:       MMETSP1137-20121227|10412_1  [L=105]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (105 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        32  (0.00780107); expected 82.0 (0.02)
Passed bias filter:                       30  (0.00731351); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.17s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 494.96
//
Query:       MMETSP1137-20121227|10413_1  [L=261]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.2e-85  283.5   4.5    2.5e-85  283.3   3.1    1.0  1  TIGR00384 dhsB: succinate dehydrogenase and fumarate reductase iron-sulfur protein
    0.00059   15.8   0.2    0.00079   15.4   0.1    1.1  1  TIGR03311 Se_dep_Molyb_1: selenium-dependent molybdenum hydroxylase 1
     0.0039   14.5   0.5     0.0067   13.7   0.3    1.3  1  TIGR03198 pucE: xanthine dehydrogenase E subunit
  ------ inclusion threshold ------
       0.03   10.7   4.6      0.084    9.2   1.0    2.2  2  TIGR01945 rnfC: electron transport complex, RnfABCDGE type, C subunit
       0.09   10.6   9.5       0.76    7.6   6.6    2.3  1  TIGR03290 CoB_CoM_SS_C: CoB--CoM heterodisulfide reductase, subunit C
       0.17    9.3   8.0         11    3.5   5.6    3.0  2  TIGR01971 NuoI: NADH-quinone oxidoreductase, chain I


Domain annotation for each model (and alignments):
>> TIGR00384  dhsB: succinate dehydrogenase and fumarate reductase iron-sulfur protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  283.3   3.1   3.6e-88   2.5e-85       1     222 []      34     254 ..      34     254 .. 0.99

  Alignments for each domain:
  == domain 1    score: 283.3 bits;  conditional E-value: 3.6e-88
    TIGR00384   1 vlRfnpdvdekphlesyevevdektlsvLdaLeqikkeqdaslafRksCReaiCGscavkvngkpkLACktkvedleqllkliieplanlpvikDLvvdleefiekleaikpYlirkeqkeeeeellqtpeeleklkelseCieCglCyssCpakklnee.flGPaalakaarfllDsRDeatkeRlealndkkgvysCttvakCsevCPkevdpasaieklk 222
                  ++R+npd++e+p++++ye++++e+  +vLdaL +ik+e+d++l+fR+sCRe+iCGsc++++ng ++LAC +k++d ++++k  i+pl+++ v kDLv d+++f+e+++++kp+l+ +e   +++el q+ e+++kl+ l+eC++C++C +sCp++++n + +lGPa+l + +r+l+DsRD +++eRl+ l d+  vy+C+t+++Cs++CPk+++p +ai+++k
  MMETSP1137-20121227|10413_1  34 IYRWNPDTNERPRMQDYEIDLNECGPMVLDALIKIKNEEDPTLTFRRSCREGICGSCSMNINGTNTLACLCKISDVKETTK--IYPLPHMYVLKDLVPDMSHFYEQHKSVKPFLVVEEGADTSKELYQSKEDRAKLDGLYECVLCACCTTSCPSYWWNADkYLGPAVLLQSYRWLADSRDASKEERLKFLDDAFKVYRCHTIMNCSKTCPKHLNPGKAIAQIK 254
                  79*************************************************************************998777..***************************************************************************999***********************************************************998 PP

>> TIGR03311  Se_dep_Molyb_1: selenium-dependent molybdenum hydroxylase 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.1   1.2e-06   0.00079      28      62 ..      75     109 ..      58     119 .. 0.81

  Alignments for each domain:
  == domain 1    score: 15.4 bits;  conditional E-value: 1.2e-06
    TIGR03311  28 ltsvknGcaeGacGactvlvnGkavkaclftvekl 62 
                    + +  c eG cG+c + +nG  + acl+++  +
  MMETSP1137-20121227|10413_1  75 TLTFRRSCREGICGSCSMNINGTNTLACLCKISDV 109
                  3456789************************9876 PP

>> TIGR03198  pucE: xanthine dehydrogenase E subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   0.3   9.8e-06    0.0067      33      63 ..      76     105 ..      56     118 .. 0.80

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 9.8e-06
    TIGR03198  33 ltgtkvscgigrcgacavlvdgkvanacllm 63 
                  l   ++sc  g cg+c++ ++g  + acl  
  MMETSP1137-20121227|10413_1  76 L-TFRRSCREGICGSCSMNINGTNTLACLCK 105
                  3.3589**********************975 PP

>> TIGR01945  rnfC: electron transport complex, RnfABCDGE type, C subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   1.0   0.00012     0.084     392     417 ..     161     186 ..     151     194 .. 0.81
   2 ?    2.3   0.1     0.015        10     364     386 ..     229     251 ..     216     260 .. 0.79

  Alignments for each domain:
  == domain 1    score: 9.2 bits;  conditional E-value: 0.00012
    TIGR01945 392 eydeaeelnlmDCieCGsCayvCPsk 417
                  + d+a+  +l +C+ C +C+ +CPs 
  MMETSP1137-20121227|10413_1 161 KEDRAKLDGLYECVLCACCTTSCPSY 186
                  44677778999*************95 PP

  == domain 2    score: 2.3 bits;  conditional E-value: 0.015
    TIGR01945 364 aCirCgkCveaCPvsLlPqqlal 386
                   C    +C+++CP  L+P +  +
  MMETSP1137-20121227|10413_1 229 RCHTIMNCSKTCPKHLNPGKAIA 251
                  5777789**********987555 PP

>> TIGR03290  CoB_CoM_SS_C: CoB--CoM heterodisulfide reductase, subunit C
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   6.6    0.0011      0.76       3      72 ..     172     254 ..     170     261 .] 0.68

  Alignments for each domain:
  == domain 1    score: 7.6 bits;  conditional E-value: 0.0011
    TIGR03290   3 acyqcGtctGscPs.........grr...tayrirklirkaklglkdevlsdd.dlwlcttcyecqercPrdvkitdvvkalr 72 
                   c+ c  ct scPs         g+     +yr     r+a ++ + + l+d  +++ c t  +c + cP+++++ +++ +++
  MMETSP1137-20121227|10413_1 172 ECVLCACCTTSCPSywwnadkylGPAvllQSYRWLADSRDASKEERLKFLDDAfKVYRCHTIMNCSKTCPKHLNPGKAIAQIK 254
                  699**********954443333323311123444444466666666667776547999***************9999998876 PP

>> TIGR01971  NuoI: NADH-quinone oxidoreductase, chain I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.0      0.15     1e+02      60      83 ..      33      57 ..      20      59 .. 0.73
   2 ?    3.5   5.6     0.016        11      34      94 ..     163     241 ..     148     252 .. 0.61

  Alignments for each domain:
  == domain 1    score: 0.4 bits;  conditional E-value: 0.15
    TIGR01971 60 kvvkaeeekgkr.rlkkyeinlgrC 83
                 ++  ++ ++++r r++ yei+l +C
  MMETSP1137-20121227|10413_1 33 SIYRWNPDTNERpRMQDYEIDLNEC 57
                 55566655544438999*****999 PP

  == domain 2    score: 3.5 bits;  conditional E-value: 0.016
    TIGR01971  34 vlkrdpGeekCiaCelCakvCpaeaikvvkaee..................ekgkrrlkkyeinlgrCifCglCeevCP 94 
                     + +G  +C+ C  C++ Cp++  + +k+                    ++++ +       + rC    +C  +CP
  MMETSP1137-20121227|10413_1 163 DRAKLDGLYECVLCACCTTSCPSYWWNADKYLGpavllqsyrwladsrdasKEERLKFLDDAFKVYRCHTIMNCSKTCP 241
                  4455568899999999999999887666665555555555556665554221111122222345566666666666666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (261 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       129  (0.0314481); expected 82.0 (0.02)
Passed bias filter:                      107  (0.0260848); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.27u 0.18s 00:00:00.45 Elapsed: 00:00:00.48
# Mc/sec: 717.69
//
Query:       MMETSP1137-20121227|10414_1  [L=60]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       129  (0.0314481); expected 82.0 (0.02)
Passed bias filter:                      116  (0.0282789); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.18s 00:00:00.31 Elapsed: 00:00:00.72
# Mc/sec: 109.99
//
Query:       MMETSP1137-20121227|10415_1  [L=301]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0032   15.6   0.0     0.0059   14.8   0.0    1.4  1  TIGR00807 malonate_madL: malonate transporter, MadL subunit


Domain annotation for each model (and alignments):
>> TIGR00807  malonate_madL: malonate transporter, MadL subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   1.4e-06    0.0059      53     116 ..     213     276 ..     206     283 .. 0.81

  Alignments for each domain:
  == domain 1    score: 14.8 bits;  conditional E-value: 1.4e-06
    TIGR00807  53 kGklkkvsqfGvgfwsamyipivvamaakqnvvaaldGGllallaavaavvvsvlvialiskss 116
                  + ++k+  q+G+   +++++ ++ + aa   v +al+GG+l+ll + + +++  + i+l+ + +
  MMETSP1137-20121227|10415_1 213 RDEMKRARQQGLWEGATLWMLMLATAAAFALVQGALQGGFLGLLFGLCRILALPFSIPLLVRRH 276
                  5678888888876656667666666677777889************************998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (301 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       105  (0.0255973); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.24u 0.14s 00:00:00.38 Elapsed: 00:00:00.36
# Mc/sec: 1103.58
//
Query:       MMETSP1137-20121227|10417_1  [L=90]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (90 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       164  (0.0399805); expected 82.0 (0.02)
Passed bias filter:                      123  (0.0299854); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.18s 00:00:00.32 Elapsed: 00:00:00.36
# Mc/sec: 329.97
//
Query:       MMETSP1137-20121227|10418_1  [L=434]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (434 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        71  (0.0173086); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.15s 00:00:00.43 Elapsed: 00:00:00.48
# Mc/sec: 1193.40
//
Query:       MMETSP1137-20121227|10420_1  [L=201]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.1e-06   25.5   0.0    2.6e-06   25.1   0.0    1.1  1  TIGR03137 AhpC: peroxiredoxin


Domain annotation for each model (and alignments):
>> TIGR03137  AhpC: peroxiredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.1   0.0   6.3e-10   2.6e-06      23     140 ..      67     187 ..      52     199 .. 0.80

  Alignments for each domain:
  == domain 1    score: 25.1 bits;  conditional E-value: 6.3e-10
    TIGR03137  23 evtdedl.kGkwsvlvfypadftfvcp.teledladkyeelkelgv.evysvstdthfvhkawhdeseaigkikypllgdptkkltrnfdvlieeagl.a.erg.tf.vidpeGvikvvevtaeg 140
                  +vt  dl kGk  v+v  p++ft  c  t l  +a + + lk+ gv e+  vs++  fv +aw ++    g ++y  l+d  ++l+ +++ + + +g    +r   f ++  +Gv+ vv++++ g
  MMETSP1137-20121227|10420_1  67 TVTLTDLcKGKKVVIVGVPGAFTPTCSkTHLPGFAADSAALKAKGVdEIVCVSVNDPFVMQAWGQAI--GGDVRY--LADMKGELAAELGLVLDATGKlGnKRNvRFaLVAEDGVVTVVKIEEGG 187
                  566666549*****************6599***************9789**************8753..367887..79*********9998887764231333134368889999999988765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (201 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       190  (0.0463189); expected 82.0 (0.02)
Passed bias filter:                      153  (0.0372989); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.21u 0.14s 00:00:00.35 Elapsed: 00:00:00.34
# Mc/sec: 780.29
//
Query:       MMETSP1137-20121227|10421_1  [L=346]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (346 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        94  (0.0229157); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.17s 00:00:00.43 Elapsed: 00:00:00.48
# Mc/sec: 951.42
//
Query:       MMETSP1137-20121227|10422_1  [L=477]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (477 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        91  (0.0221843); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.13s 00:00:00.46 Elapsed: 00:00:00.46
# Mc/sec: 1368.67
//
Query:       MMETSP1137-20121227|10423_1  [L=266]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.8e-41  139.6   5.2    3.3e-41  139.4   3.6    1.0  1  TIGR01830 3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase
    2.6e-36  123.2   8.7      5e-35  118.9   6.0    2.0  1  TIGR02415 23BDH: acetoin reductases
    1.9e-33  113.8   3.4    2.4e-33  113.5   2.4    1.0  1  TIGR01832 kduD: 2-deoxy-D-gluconate 3-dehydrogenase
    1.7e-32  110.7   7.5    2.3e-31  107.0   5.2    2.1  1  TIGR03971 SDR_subfam_1: oxidoreductase, SDR family
    3.6e-32  109.8   4.0    4.1e-32  109.6   2.8    1.0  1  TIGR01829 AcAcCoA_reduct: acetoacetyl-CoA reductase
    2.4e-28   96.9  11.1    3.5e-26   89.8   7.7    2.0  1  TIGR01963 PHB_DH: 3-hydroxybutyrate dehydrogenase
    2.1e-25   87.3   6.9    2.6e-25   87.0   4.8    1.0  1  TIGR01831 fabG_rel: putative 3-oxoacyl-(acyl-carrier-protein) reductase
    8.1e-24   82.1   3.1    9.5e-24   81.9   2.1    1.1  1  TIGR03325 BphB_TodD: cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase
      3e-21   73.7   8.3    3.5e-21   73.5   5.8    1.0  1  TIGR03206 benzo_BadH: 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase
      1e-19   68.3   9.2    7.5e-19   65.4   6.4    1.9  1  TIGR02632 RhaD_aldol-ADH: rhamnulose-1-phosphate aldolase/alcohol dehydrogenase
    4.4e-18   63.4   0.5    6.3e-18   62.9   0.3    1.2  1  TIGR01500 sepiapter_red: sepiapterin reductase
    3.8e-13   47.0   5.4      9e-11   39.2   0.1    2.2  2  TIGR02685 pter_reduc_Leis: pteridine reductase
    0.00012   19.5   0.7    0.00022   18.7   0.5    1.4  1  TIGR01289 LPOR: light-dependent protochlorophyllide reductase


Domain annotation for each model (and alignments):
>> TIGR01830  3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  139.4   3.6     1e-43   3.3e-41       1     237 [.      27     261 ..      27     263 .. 0.93

  Alignments for each domain:
  == domain 1    score: 139.4 bits;  conditional E-value: 1e-43
    TIGR01830   1 alvtGasrgiGkaiakklakegakvviterskeekaeelaeelkeagvkaaavkldvsdeeevkelveeveeelg.eidilvnnAGitrDklllrmkeedwdevikvnLkgvfnvtkavlkkmikkrsGriinissvvgllGnagqan...YaasKaGligltkslakElasrnitvnavaPGfietdmteklsekvkkkileqiplkrlgkpeevaaavafLasdeasyitGqvlkvdGG 237
                  +++tG+srgiGka+a+++akega+vv+   + +++++++++e+++ g+ka++v++dvs+e++ k++vee+++++g ei      AG    + ++   ee+ d+++ vn+k+v    k  + +m     G+ii  ss +g +G a  a    Y+asK+ +  l k  a E a   +++n ++PG  +tdmt +++ +  +k ++ ip  r g+p+e+ ++v++Lasde++y+tG+ + +d G
  MMETSP1137-20121227|10423_1  27 VVITGSSRGIGKATALSFAKEGASVVLAA-RGADALAAVKSEIESLGAKAHTVVTDVSSEADNKKMVEEAKAAFGgEIHAAFLCAGAITMGAIVDTAEEQVDHIVGVNIKSVIFGLKYLVPAMKA--GGSIIVCSSTMGSTGRASCAGlglYSASKSMVDMLVKYAAVEAAP-TVRINGISPGVFSTDMTTAMNPDELTKSTNLIP--RPGNPDEIGHLVKYLASDESAYVTGSNMVIDAG 261
                  68**************************5.577889************************************99769***999***999999******************************976..9**************875553333********99***99999776.7**********************9999999999..99****************************998 PP

>> TIGR02415  23BDH: acetoin reductases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  118.9   6.0   1.6e-37     5e-35       1     251 [.      25     262 ..      25     265 .. 0.90

  Alignments for each domain:
  == domain 1    score: 118.9 bits;  conditional E-value: 1.6e-37
    TIGR02415   1 kvalvtGaaqGiGkaiaerLakdGfavavadlneetaketakelkekgtkavavkldvsdkseveeaveqaveklG.eldvlvnnaGvalvtpileiteeeleklynvnvkgvlfGiqaaaekfkklkhkGkiinaasiagveg...spelsaysstkfavrgltqtaakeLakkgitvnayaPGivktemreeideklaelagkeigekleefsseiklGresePedvaelvsflasedsdyitGqsilvdGGl 251
                  kv ++tG+++GiGka a  +ak+G +v++a    ++++++++e+++ g ka  v++dvs+ ++ +++ve+a++ +G e++     aG  ++ +i +  ee+++++  vn+k+v+fG++  + +   +k +G ii  +s  g +g    + l++ys++k  v  l + aa e a+  + +n+ +PG+  t+m+  ++ ++           l++ ++   + r  +P+++ +lv +las++s y+tG  +++d G 
  MMETSP1137-20121227|10423_1  25 KVVVITGSSRGIGKATALSFAKEGASVVLAARGADALAAVKSEIESLGAKAHTVVTDVSSEADNKKMVEEAKAAFGgEIHAAFLCAGAITMGAIVDTAEEQVDHIVGVNIKSVIFGLKYLVPA---MKAGGSIIVCSSTMGSTGrasCAGLGLYSASKSMVDMLVKYAAVEAAPT-VRINGISPGVFSTDMTTAMNPDE-----------LTKSTNL--IPRPGNPDEIGHLVKYLASDESAYVTGSNMVIDAGW 262
                  799************************************************************************6379**************************************988766...5689****999987776611156899*******************8875.789************98765433...........2233333..358******************************996 PP

>> TIGR01832  kduD: 2-deoxy-D-gluconate 3-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  113.5   2.4   7.6e-36   2.4e-33       3     245 ..      22     262 ..      21     265 .. 0.90

  Alignments for each domain:
  == domain 1    score: 113.5 bits;  conditional E-value: 7.6e-36
    TIGR01832   3 leGkvalvtGantGlGqgiavglaeaGadivgvg..iselsetqekvealGrkflslkadladeeaakalvdeaveeag.kidilvnnaGiirredavefsekdwddvlnvnlkavfllsqavakkllkqGrkgkiiniasllsfqGGirvps...ytasksavaGltkllanewakkginvnaiaPGyletnntealradekrnaaileriPagrwGepedlagaavflassasdyvnGailavdGGw 245
                  +eGkv+++tG+++G+G++ a+++a+ Ga +v ++    +l   ++++e+lG+k++++  d+++e++ k++v+ea +++g +i      aG i     v+ +e++ d+++ vn+k+v +  + +   ++k G  g ii  +s +   G    +    y+asks v  l k  a e  +  +++n i+PG ++t+ t a+  de  +   ++ iP  r G+p++++  + +las+ s yv+G  + +d Gw
  MMETSP1137-20121227|10423_1  22 FEGKVVVITGSSRGIGKATALSFAKEGASVVLAArgADALAAVKSEIESLGAKAHTVVTDVSSEADNKKMVEEAKAAFGgEIHAAFLCAGAITMGAIVDTAEEQVDHIVGVNIKSVIFGLKYLVP-AMKAG--GSIIVCSSTMGSTGRASCAGlglYSASKSMVDMLVKYAAVEA-APTVRINGISPGVFSTDMTTAMNPDELTKS--TNLIP--RPGNPDEIGHLVKYLASDESAYVTGSNMVIDAGW 262
                  59****************************98872256678899******************************9999779***********************************998888776.56777..79999999999998776653334**************99995.578********************9997655..45577..67******************************** PP

>> TIGR03971  SDR_subfam_1: oxidoreductase, SDR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  107.0   5.2   7.4e-34   2.3e-31       2     264 ..      23     262 ..      22     263 .. 0.87

  Alignments for each domain:
  == domain 1    score: 107.0 bits;  conditional E-value: 7.4e-34
    TIGR03971   2 eGkvalitGaarGqGraeavrlaaeGadiiaidlceplsdvvtypaatredldetaklvealGrkvlarkadvrkleelravveegveefG.rldvvvanaGvlsygrafelseeqWdtvldvnlkGvWktvkavvPalierknGGsiiivssvaglka...lpglahyaaakhGlvgltktlanelaeygirvnsihPtsvdtamiepeamrelfakreeaaraflpalpvsglvepedvadvvawlasdesryitGaqlavdaGa 264
                  eGkv +itG++rG G+a a+ +a+eGa ++               a   + l+   + +e+lG k+ + ++dv + ++ +++vee+ + fG  +      aG +++g++ +  eeq d+++ vn+k v   +k  vPa+   k GGsii+ ss+ g  +     gl+ y+a+k  +  l+k  a e+a+  +r+n i+P   +t m++  am      +++ + +  +  p +   +p+++ ++v +lasdes+y+tG+++ +daG+
  MMETSP1137-20121227|10423_1  23 EGKVVVITGSSRGIGKATALSFAKEGASVVLA-------------ARGADALAAVKSEIESLGAKAHTVVTDVSSEADNKKMVEEAKAAFGgEIHAAFLCAGAITMGAIVDTAEEQVDHIVGVNIKSVIFGLKYLVPAM---KAGGSIIVCSSTMGSTGrasCAGLGLYSASKSMVDMLVKYAAVEAAP-TVRINGISPGVFSTDMTT--AM------NPDELTKSTNLIPRP--GNPDEIGHLVKYLASDESAYVTGSNMVIDAGW 262
                  8**************************98742.............33345577778899******************************9648999999***************************************9...78*********987765111678899******************999.69**************99..33......333333333444444..57*****************************9 PP

>> TIGR01829  AcAcCoA_reduct: acetoacetyl-CoA reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  109.6   2.8   1.3e-34   4.1e-32       1     239 [.      25     261 ..      25     264 .. 0.88

  Alignments for each domain:
  == domain 1    score: 109.6 bits;  conditional E-value: 1.3e-34
    TIGR01829   1 rvalvtGglgGiGtaickrlakdGykvvanvapneerakewlqekevegfdvavvkadvssfeeakaavakveael.GpvdvlvnnaGitrdavfkkmtkeqWeevidtnlnsvfnvtrpviegmlergfGriinissvnGlkGqf...GqanysaakaGliGftkalaqegakkgvtvnviaPGyiatemvkavredvlkkivaqiPvkrlgkpeeiaaavaflaseeagyvtGatlsvnGG 239
                  +v ++tG+++GiG+a +  +ak+G  vv + ++ +++ ++++ e e  g + + v +dvss  + k++v++ +a+  G++     +aG      +    +eq ++++ +n++sv    + ++ +m+  + G ii  ss  G  G++   G   ysa+k+ +  + k  a  +a+  v +n i+PG  +t+m++a++ d l+k ++ iP  r g+p+ei+++v +las+e++yvtG+++ ++ G
  MMETSP1137-20121227|10423_1  25 KVVVITGSSRGIGKATALSFAKEGASVVLAARG-ADALAAVKSEIESLGAKAHTVVTDVSSEADNKKMVEEAKAAFgGEIHAAFLCAGAITMGAIVDTAEEQVDHIVGVNIKSVIFGLKYLVPAMK--AGGSIIVCSSTMGSTGRAscaGLGLYSASKSMVDMLVKYAAV-EAAPTVRINGISPGVFSTDMTTAMNPDELTKSTNLIP--RPGNPDEIGHLVKYLASDESAYVTGSNMVIDAG 261
                  7899************************99986.5556678889999999***********************998369***999*996666666677899*************9999******95..6789*********999862226778*****977766666555.56789******************************99..89***************************9988 PP

>> TIGR01963  PHB_DH: 3-hydroxybutyrate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.8   7.7   1.1e-28   3.5e-26       2     254 ..      25     264 ..      24     265 .. 0.91

  Alignments for each domain:
  == domain 1    score: 89.8 bits;  conditional E-value: 1.1e-28
    TIGR01963   2 kvalvtGaasGiglaiakelaaaGakvvvndleeeaaeaaakeleeaggevlalkadvtkeeeiadlieavaaefg.sldiLvnnAGiqhvapieefptekfekiiavnltsafhtiraalpimkkqgwGriiniasvhglvasafKsa...YvaaKHglvGltKvlAlEvAetgitanaicPgyvrtpLvekqiadqaktrgiseeqvvkevllkkqptkrfvtveevaelalflasdaaaqitGqalsldgGwta 254
                  kv+++tG++ Gig+a a ++a++Ga+vv+   +++a++a+++e+e+ g+++ ++++dv++e++ ++++e+++a+fg ++      AG  ++ +i + ++e+ ++i+ vn++s +   +  +p mk+   G ii  +s+ g  + a  +    Y a+K  +  l K +A+E A   ++ n i Pg   t +             ++ ++  k   l + p     +++e+++l+ +lasd++a +tG+++++d Gw  
  MMETSP1137-20121227|10423_1  25 KVVVITGSSRGIGKATALSFAKEGASVVLAARGADALAAVKSEIESLGAKAHTVVTDVSSEADNKKMVEEAKAAFGgEIHAAFLCAGAITMGAIVDTAEEQVDHIVGVNIKSVIFGLKYLVPAMKAG--GSIIVCSSTMGSTGRASCAGlglYSASKSMVDMLVKYAAVEAAP-TVRINGISPGVFSTDMTT----------AMNPDELTKSTNLIPRPG----NPDEIGHLVKYLASDESAYVTGSNMVIDAGWAL 264
                  99*************************************************************************7357888889***************************************986..79******999877665553333******************887.5***********999855..........466667777777777776....69*****************************75 PP

>> TIGR01831  fabG_rel: putative 3-oxoacyl-(acyl-carrier-protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.0   4.8   8.2e-28   2.6e-25       1     237 [.      27     261 ..      27     263 .. 0.86

  Alignments for each domain:
  == domain 1    score: 87.0 bits;  conditional E-value: 8.2e-28
    TIGR01831   1 vlvtgasrgigraialklaadgfeiavhyrsdradaeesvaairaqggnarllkfdvadrvavrevle.adiaehgayygvvlnagiardaafpalseedwdavietnldgfynvihplvmpmirarkggriitlasvsgvmgn...rgqvnysaakagligatkalavelakrkitvnciapglidtemv.aevekdlkealklvpmkrvgkaeevaalaaflmsddaayvtrqvisvngg 237
                  v++tg+srgig+a al +a +g  + +  r    +  ++ ++i++ g++a+ +  dv+     ++++e a+ a  g  +   l+ag     a+   +ee+ d ++  n+ +    ++ lv     ++ gg ii  +s  g  g     g   ysa+k+ +    k  ave a   + +n i+pg+  t+m  a+ +++l+++ +l+p  r g+++e+  l+ +l sd++ayvt   + ++ g
  MMETSP1137-20121227|10423_1  27 VVITGSSRGIGKATALSFAKEGASVVLAARGAD-ALAAVKSEIESLGAKAHTVVTDVSSEADNKKMVEeAKAAFGGEIHAAFLCAGAITMGAIVDTAEEQVDHIVGVNIKSVIFGLKYLVPA---MKAGGSIIVCSSTMGSTGRascAGLGLYSASKSMVDMLVKYAAVEAA-PTVRINGISPGVFSTDMTtAMNPDELTKSTNLIP--RPGNPDEIGHLVKYLASDESAYVTGSNMVIDAG 261
                  789**********************99876554.5567899****************999888877761556667789999******99********************9977777766544...478*********999888622257778********99********76.5799*************73567889999999999..89**********************987777766 PP

>> TIGR03325  BphB_TodD: cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.9   2.1     3e-26   9.5e-24       2     201 ..      21     221 ..      20     255 .. 0.86

  Alignments for each domain:
  == domain 1    score: 81.9 bits;  conditional E-value: 3e-26
    TIGR03325   2 klkdevvlvtggasglgralvdrfvaegarvavldksaagleeleaa...hgdkvvgvegdvrllddhkeavarcveafg.kldtlipnagiwdystalvdipddrideafdevfeinvkgyllavkaalpalvasrgsvif...tvsnagfypngggalytaakhavvglvkelayelapyvrvngvapgglstdlrglksldlad 201
                  +++++vv++tg + g+g+a    f  ega v +  + a+ l +++++    g+k  +v+ dv + +d+k+ v++  +afg  +++    ag      a+vd  ++++    d +  +n+k+ +++ k  +pa+ a  gs+i    t+  +g  +  g  ly+a+k  v  lvk  a e ap vr+ng++pg +std+      d   
  MMETSP1137-20121227|10423_1  21 RFEGKVVVITGSSRGIGKATALSFAKEGASVVLAARGADALAAVKSEiesLGAKAHTVVTDVSSEADNKKMVEEAKAAFGgEIHAAFLCAGAITM-GAIVDTAEEQV----DHIVGVNIKSVIFGLKYLVPAMKA-GGSIIVcssTMGSTGRASCAGLGLYSASKSMVDMLVKYAAVEAAPTVRINGISPGVFSTDMTTAMNPDELT 221
                  6789*************************************999975222699**************************6479999999998764.57888888776....67999***************9865.68888723355667778889999*************************************98766555555 PP

>> TIGR03206  benzo_BadH: 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.5   5.8   1.1e-23   3.5e-21       2     247 ..      23     261 ..      22     264 .. 0.88

  Alignments for each domain:
  == domain 1    score: 73.5 bits;  conditional E-value: 1.1e-23
    TIGR03206   2 kdkvaivtgggggiggaicrrfaeegakvavldlnaeaaekvaaairekggkaeavavditdrasvdaavaaaeealg.pvdvlvnnagwdvlkpflktekaewerliainltgalymhhavlkgmverkagrivniasd...aarvgssgeavyaackgglvafsktlarelarhgitvnvvcpgptdtalledvkseaekpeklieaftraiplgrlgkpddlagailflasddaafitgqvlsvsgg 247
                  ++kv+++tg + gig a+ + fa+ega v +    a+a   v ++i + g ka++v +d++++a  +  v  a+ a+g  +      ag   ++++++t + + ++++ +n++  ++  + +++ m     g i+  +s    ++r+  +g  +y+a k  +  + k  a e a   + +n + pg   t +     + a +p+ l+++ t+ ip  r g+pd++   + +lasd++a++tg  + +  g
  MMETSP1137-20121227|10423_1  23 EGKVVVITGSSRGIGKATALSFAKEGASVVLAARGADALAAVKSEIESLGAKAHTVVTDVSSEADNKKMVEEAKAAFGgEIHAAFLCAGAITMGAIVDTAEEQVDHIVGVNIKSVIFGLKYLVPAMK--AGGSIIVCSSTmgsTGRASCAGLGLYSASKSMVDMLVKYAAVEAA-PTVRINGISPGVFSTDM-----TTAMNPDELTKS-TNLIP--RPGNPDEIGHLVKYLASDESAYVTGSNMVIDAG 261
                  589***********************************************************************9997258888999*************************************995..567777666651115677788999******988888888777765.6899*******887754.....56899**99765.77777..99***********************99888776 PP

>> TIGR02632  RhaD_aldol-ADH: rhamnulose-1-phosphate aldolase/alcohol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.4   6.4   2.4e-21   7.5e-19     406     669 ..      16     261 ..      11     265 .. 0.80

  Alignments for each domain:
  == domain 1    score: 65.4 bits;  conditional E-value: 2.4e-21
    TIGR02632 406 mPkekelarrvalvtGgasGiGrevarrlvdeGahvvladldaeaaeavaaelvdkfGadkavalkldvtdeeavkaafaevalayGG.vdivvnnaGiavskpleeteleeWdlnldilatGyflvareaarllrkqglggnlvfiasknavvakknala....ysaakaaeahlvrllaielaelgirvntvaPdavlrGsgifagewrekraaaygieadkleefykkrsllkrevlpediaeavfllasdklekttGliitvdaG 669
                  m   k + ++v+++tG++ GiG+++a+ +++eGa vvla   a+a++av+ e+    Ga ka +++ dv +e   k++++e+  a+GG + +    aG  +   + +t +e+ d  + ++++   +  +  +  ++    gg+++  +s  + + + +  a    ysa+k++   lv+  a+e a++ +r+n++ P        +f+++ ++       ++ d+l    k   l+ r+  p++i + v +lasd+++  tG  + +daG
  MMETSP1137-20121227|10423_1  16 MVDTKRFEGKVVVITGSSRGIGKATALSFAKEGASVVLAARGADALAAVKSEIE-SLGA-KAHTVVTDVSSEADNKKMVEEAKAAFGGeIHAAFLCAGAITMGAIVDTAEEQVDHIVGVNIKSVIFGLKYLVPAMK---AGGSIIVCSSTMGSTGRAS-CAglglYSASKSMVDMLVKYAAVEAAPT-VRINGISPG-------VFSTDMTT------AMNPDELT---KSTNLIPRPGNPDEIGHLVKYLASDESAYVTGSNMVIDAG 261
                  667899***********************************************8.7887.678999*********************97889999************************99998777666655555...6999999988876543332.222334*********************9.*******94.......45554432......23455554...3455666666666666666666666666666666666666 PP

>> TIGR01500  sepiapter_red: sepiapterin reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.9   0.3     2e-20   6.3e-18       2     203 ..      26     214 ..      25     223 .. 0.86

  Alignments for each domain:
  == domain 1    score: 62.9 bits;  conditional E-value: 2e-20
    TIGR01500   2 lllvtGasrGfGrelaqelakrlkaegsvlvLlaRndeaLkeskaeieaevsalsvdlvsldleaakdvedllkaleesikkeeyerillinnaGtlgdvskrekelsDsknvqkyydsnvtslvvltsellkklkelqglektvvnlssLcai..kpfkswalYCaskaaRdmffqvLaleekedvkvLnYapGvlDtdmqsq 203
                  ++++tG+srG+G++ a  +ak    eg  +vL aR  +aL   k eie+   + + ++v  d+++++d +++++  ++  +  e + + l   a t+g +  +++     ++v++    n+ s++     l+ ++k   +   ++v +s++ +   ++  ++ lY ask++ dm+ +  a+e  + v++   +pGv+ tdm++ 
  MMETSP1137-20121227|10423_1  26 VVVITGSSRGIGKATALSFAK----EGASVVLAARGADALAAVKSEIES--LGAKAHTVVTDVSSEADNKKMVEEAKAAFGG-EIHAAFLCAGAITMGAIVDTAE-----EQVDHIVGVNIKSVIFGLKYLVPAMK---AGGSIIVCSSTMGSTgrASCAGLGLYSASKSMVDMLVKYAAVEAAPTVRINGISPGVFSTDMTTA 214
                  689******************....9**********************8..5666678888999998776666666665554.4566677777777777766666.....89999*********************...667899*****98763367889****************************************976 PP

>> TIGR02685  pter_reduc_Leis: pteridine reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.8   1.1   0.00027     0.085       3      49 ..      26      71 ..      24     130 .. 0.73
   2 !   39.2   0.1   2.8e-13     9e-11     165     264 ..     167     264 ..     145     266 .] 0.87

  Alignments for each domain:
  == domain 1    score: 9.8 bits;  conditional E-value: 0.00027
    TIGR02685  3 aalvtGaakriGrsiavklhqeGyrvvlhyrrsaeaasslaaelnae 49
                 + ++tG+++ iG++ a  + +eG  vvl  r +++ a ++ +e+++ 
  MMETSP1137-20121227|10423_1 26 VVVITGSSRGIGKATALSFAKEGASVVLAARGADALA-AVKSEIESL 71
                 689*************************987665433.333333332 PP

  == domain 2    score: 39.2 bits;  conditional E-value: 2.8e-13
    TIGR02685 165 qpllgfslytmakealeGltrsaalelaslqirvngvapGlsllpdampeevk.eeyrrkvplgqreasaeqiadvviflvskkakyitGtiikvdGGlsl 264
                    + g  ly+ +k  ++ l + aa+e a+  +r+ng++pG+  + ++m++ ++ +e  +   l  r    ++i   v +l s+++ y+tG+ + +d G++l
  MMETSP1137-20121227|10423_1 167 ASCAGLGLYSASKSMVDMLVKYAAVEAAP-TVRINGISPGV--FSTDMTTAMNpDELTKSTNLIPRPGNPDEIGHLVKYLASDESAYVTGSNMVIDAGWAL 264
                  468999********************998.59********7..6778877654288899999************************************988 PP

>> TIGR01289  LPOR: light-dependent protochlorophyllide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.5     7e-07   0.00022       5      96 ..      26     118 ..      22     140 .. 0.80

  Alignments for each domain:
  == domain 1    score: 18.7 bits;  conditional E-value: 7e-07
    TIGR01289   5 tviitgassglglaaakalvekgkwhvvmacrdlekaekaaksl.glpkdsytilkldlasldsvrkfveqfres..grsldalvcnaavylpll 96 
                   v+itg+s g+g a+a +++++g   vv+a r  +    +  ++  l ++++t++  d++s    +k+ve+ +++  g    a++c  a+ +  +
  MMETSP1137-20121227|10423_1  26 VVVITGSSRGIGKATALSFAKEG-ASVVLAARGADALAAVKSEIeSLGAKAHTVV-TDVSSEADNKKMVEEAKAAfgGEIHAAFLCAGAITMGAI 118
                  69*********************.99******99887777666624667777776.699999999****99997543556677899999988655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (266 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       289  (0.0704534); expected 82.0 (0.02)
Passed bias filter:                      156  (0.0380302); expected 82.0 (0.02)
Passed Vit filter:                        20  (0.00487567); expected 4.1 (0.001)
Passed Fwd filter:                        13  (0.00316919); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.39u 0.17s 00:00:00.56 Elapsed: 00:00:00.53
# Mc/sec: 662.44
//
Query:       MMETSP1137-20121227|10424_1  [L=358]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (358 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        48  (0.0117016); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.16s 00:00:00.43 Elapsed: 00:00:00.52
# Mc/sec: 908.69
//
Query:       MMETSP1137-20121227|10425_1  [L=597]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (597 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       230  (0.0560702); expected 82.0 (0.02)
Passed bias filter:                       98  (0.0238908); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.17s 00:00:00.57 Elapsed: 00:00:00.44
# Mc/sec: 1790.85
//
Query:       MMETSP1137-20121227|10426_1  [L=301]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.8e-10   36.8   0.0    1.9e-09   34.9   0.0    1.8  1  TIGR01214 rmlD: dTDP-4-dehydrorhamnose reductase
     0.0011   16.4   0.0     0.0018   15.7   0.0    1.3  1  TIGR03649 ergot_EASG: ergot alkaloid biosynthesis protein, AFUA_2G17970 family
     0.0048   13.8   0.0      0.077    9.9   0.0    2.2  1  TIGR01181 dTDP_gluc_dehyt: dTDP-glucose 4,6-dehydratase


Domain annotation for each model (and alignments):
>> TIGR01214  rmlD: dTDP-4-dehydrorhamnose reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.9   0.0   1.4e-12   1.9e-09     121     230 ..     108     219 ..      63     227 .. 0.89

  Alignments for each domain:
  == domain 1    score: 34.9 bits;  conditional E-value: 1.4e-12
    TIGR01214 121 lnvYgqsKlaGEvavraasekalivRtswlygasggrnFvktmlrlakereelkvvadQi..gsPTyakdlaevlaaller..eargvyHlanegqvSwyefaqaifevleeeg 230
                   + +++sK +GE+av++a+++a i+R + l+g +  + F++ + r  ++   l   +  +    P  a+d+a++++++l +  ++  +y la+e++  + e +  +f+ ++ e 
  MMETSP1137-20121227|10426_1 108 PSKWARSKALGEQAVLEAFPSATIMRCATLFGDE--DHFLRRIARISRHLPFLPLPDGGTakTQPVLAQDVAAAIMKALIDpaTKGKTYELAGEQVFTYKEVTDFVFKSIGDEN 219
                  45689****************************9..59**********9999999887652257************99998888889*********************998876 PP

>> TIGR03649  ergot_EASG: ergot alkaloid biosynthesis protein, AFUA_2G17970 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   1.3e-06    0.0018     170     217 ..     170     217 ..     163     236 .. 0.86

  Alignments for each domain:
  == domain 1    score: 15.7 bits;  conditional E-value: 1.3e-06
    TIGR03649 170 fvsaeDiArvAvkaLtdksaknteylvlGpeLltYddvAeiLsevlgR 217
                   v a+D+A+  +kaL+d ++k + y + G +++tY +v + + + +g 
  MMETSP1137-20121227|10426_1 170 PVLAQDVAAAIMKALIDPATKGKTYELAGEQVFTYKEVTDFVFKSIGD 217
                  5789**********************************9988777775 PP

>> TIGR01181  dTDP_gluc_dehyt: dTDP-glucose 4,6-dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.9   0.0   5.7e-05     0.077     174     269 ..     130     223 ..      15     233 .. 0.81

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 5.7e-05
    TIGR01181 174 litrcsnnyGpyqfpekliPllitnalagkklpvyGdGqqvrDwlyveDhcrai.elvlekgrvgevyniggeeertnlevvkiilelldkdedlie 269
                  +i rc+  +G  ++  + i +++++ l    lp+   G+     + ++D + ai +++++ +++g++y+++ge+  t +ev + + ++++++++ i+
  MMETSP1137-20121227|10426_1 130 TIMRCATLFGDEDHFLRRIARISRH-LPF--LPLPDGGTAKTQPVLAQDVAAAImKALIDPATKGKTYELAGEQVFTYKEVTDFVFKSIGDENNAIS 223
                  5556666666555555544443332.222..33333344444567788999997246778899**************************99888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (301 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       102  (0.0248659); expected 82.0 (0.02)
Passed bias filter:                       97  (0.023647); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.27u 0.14s 00:00:00.41 Elapsed: 00:00:00.41
# Mc/sec: 968.99
//
Query:       MMETSP1137-20121227|10427_1  [L=402]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (402 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        77  (0.0187713); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.14s 00:00:00.41 Elapsed: 00:00:00.49
# Mc/sec: 1082.85
//
Query:       MMETSP1137-20121227|10428_1  [L=209]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (209 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        50  (0.0121892); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.15s 00:00:00.34 Elapsed: 00:00:00.36
# Mc/sec: 766.27
//
Query:       MMETSP1137-20121227|10429_1  [L=231]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (231 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.12s 00:00:00.31 Elapsed: 00:00:00.31
# Mc/sec: 983.53
//
Query:       MMETSP1137-20121227|10430_1  [L=219]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0001   19.5   0.1    0.00019   18.7   0.0    1.5  2  TIGR03516 ppisom_GldI: peptidyl-prolyl isomerase, gliding motility-associated
  ------ inclusion threshold ------
      0.037   10.6   0.0      0.054   10.1   0.0    1.2  1  TIGR02845 spore_V_AD: stage V sporulation protein AD
        2.2    6.7  13.0       0.15   10.3   3.5    2.4  2  TIGR01409 TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence


Domain annotation for each model (and alignments):
>> TIGR03516  ppisom_GldI: peptidyl-prolyl isomerase, gliding motility-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.1      0.66   9.1e+02       5      18 ..      21      34 ..      18      36 .. 0.79
   2 !   18.7   0.0   1.4e-07   0.00019      61     172 ..      93     211 ..      87     215 .. 0.76

  Alignments for each domain:
  == domain 1    score: -3.1 bits;  conditional E-value: 0.66
    TIGR03516  5 iavlllvllllgCk 18
                  avl+ ++++lgC 
  MMETSP1137-20121227|10430_1 21 HAVLAALVVALGCV 34
                 5788999999***6 PP

  == domain 2    score: 18.7 bits;  conditional E-value: 1.4e-07
    TIGR03516  61 evkyetskkGfwyaykkkdttetktpetgDlvsfeyeikaldgdviyskeelg....pktykvdqedlisGlrdglklmkegeevtfllPsykayGyyG....dedk.igsnlpikstvtl 172
                   +k++++++G  y ++  ++++++ p  g +v ++y+    +g++  s    g    + tyk    ++++G  d +  mkeg + ++ +P   ayG  G    d +  + +n  ++ ++tl
  MMETSP1137-20121227|10430_1  93 VKKFYKTESGVKY-FD-LKEGKGYSPFPGQIVVLKYKAFLSNGQMFDSSSGPGrkalVATYKATPPQMLKGWEDVIGDMKEGGTRVIQVPPELAYGEKGvcigDGEClVPPNERLQFELTL 211
                  468999999*987.44.457899**************9999999888887666222256999999*******************************6541111555314456666666665 PP

>> TIGR02845  spore_V_AD: stage V sporulation protein AD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0   3.9e-05     0.054     180     224 ..      64     108 ..      53     123 .. 0.90

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 3.9e-05
    TIGR02845 180 atiGkvvdlGltdpldlGaamaPaavdtieahlkdtglsvddydl 224
                    iG+   lG+t +  +G    Pa +dt ++ + +t+  v+++dl
  MMETSP1137-20121227|10430_1  64 NQIGRRGVLGVTAAAAVGIGAGPANADTEVKKFYKTESGVKYFDL 108
                  56899999************************************9 PP

>> TIGR01409  TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.7      0.12   1.7e+02      11      20 ..      22      31 ..      13      38 .. 0.58
   2 ?   10.3   3.5   0.00011      0.15       2      29 .]      67      89 ..      66      89 .. 0.91

  Alignments for each domain:
  == domain 1    score: 0.8 bits;  conditional E-value: 0.12
    TIGR01409 11 aaagaaaglg 20
                 a+ +a++++ 
  MMETSP1137-20121227|10430_1 22 AVLAALVVAL 31
                 4444444432 PP

  == domain 2    score: 10.3 bits;  conditional E-value: 0.00011
    TIGR01409  2 sRRdFLkaaaaagaaaglglllpsparA 29
                  RR+ L+ +aaa+++ g+g     pa+A
  MMETSP1137-20121227|10430_1 67 GRRGVLGVTAAAAVGIGAG-----PANA 89
                 5*****************7.....8887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (219 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        88  (0.0214529); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.20u 0.16s 00:00:00.36 Elapsed: 00:00:00.27
# Mc/sec: 1070.58
//
Query:       MMETSP1137-20121227|10431_1  [L=119]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.4e-22   76.9  10.1    3.7e-22   76.8   7.0    1.0  1  TIGR01147 V_ATP_synt_G: V-type ATPase, G subunit
  ------ inclusion threshold ------
      0.022   11.2   0.6      0.024   11.1   0.4    1.0  1  TIGR01787 squalene_cyclas: squalene/oxidosqualene cyclases
      0.031   12.4  12.2      0.042   12.0   8.5    1.3  1  TIGR02926 AhaH: ATP synthase archaeal, H subunit
          2    6.4  14.7        7.3    4.5  10.2    1.8  1  TIGR02499 HrpE_YscL_not: type III secretion apparatus protein, HrpE/YscL family


Domain annotation for each model (and alignments):
>> TIGR01147  V_ATP_synt_G: V-type ATPase, G subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.8   7.0   3.6e-25   3.7e-22       6     105 ..      17     117 ..      11     119 .] 0.95

  Alignments for each domain:
  == domain 1    score: 76.8 bits;  conditional E-value: 3.6e-25
    TIGR01147   6 q.GiqqLLqAekrAaekvseARkrkakrlkqAkeeAqkevekYklqkekefkefeakalggkeeveekieaeteekiaelkkaveknkeevikdllelvid 105
                    Giq+LLqAe++Aae+v +A+  k  +lkqAkeeA +e  +Yk+q+e +f  f ++ +g  +  ++  +a t ++++ + k v+ nk  +++ ll+ v +
  MMETSP1137-20121227|10431_1  17 AlGIQKLLQAEHEAAEVVAKAKAEKVSKLKQAKEEADAEXAAYKQQREGQFAIFSKERTGXSGTHKTATDALTVKELDSIAKQVAANKSTMVEMLLKSVTT 117
                  24***********************************************************************************************9987 PP

>> TIGR01787  squalene_cyclas: squalene/oxidosqualene cyclases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.4   2.4e-05     0.024     299     387 ..      16     103 ..       3     117 .. 0.81

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 2.4e-05
    TIGR01787 299 TafavqaLlesgdlkdefkpalvKaleflkkkQikkdaygdwkvkranskpGgwa.FsfenkyypdVdDtavvalklvllkseeekvkre 387
                   a+ +q Ll++ ++  e   a +Ka +  k kQ k++a  + + ++++ + G +a Fs+e ++      ta+ al +  l s  ++v  +
  MMETSP1137-20121227|10431_1  16 AALGIQKLLQAEHEAAE-VVAKAKAEKVSKLKQAKEEADAEXAAYKQQRE-GQFAiFSKERTGXSGTHKTATDALTVKELDSIAKQVAAN 103
                  68999******766554.45568999***********9999999999999.99988999999*999999999999999988886666554 PP

>> TIGR02926  AhaH: ATP synthase archaeal, H subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   8.5   4.1e-05     0.042       1      69 [.      20      86 ..      20     104 .. 0.78

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 4.1e-05
    TIGR02926  1 leeikkAEekaeelieeAkeerkqriaeAreeAkelleeaeeeAeklkeeileeaeeeiekEaekIlee 69
                 +++  +AE++a e+++ Ak e+  ++++A+eeA+   e a  + +++++  + ++e  +    +k  ++
  MMETSP1137-20121227|10431_1 20 IQKLLQAEHEAAEVVAKAKAEKVSKLKQAKEEADA--EXAAYKQQREGQFAIFSKERTGXSGTHKTATD 86
                 578889***************************94..88888888888888888887777666665555 PP

>> TIGR02499  HrpE_YscL_not: type III secretion apparatus protein, HrpE/YscL family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5  10.2    0.0071       7.3      10      53 ..      24      67 ..      15     118 .. 0.82

  Alignments for each domain:
  == domain 1    score: 4.5 bits;  conditional E-value: 0.0071
    TIGR02499 10 aala.qAeailaaArqkaekliadaeeeaeasrqegyeqgleqaw 53
                  + + +A++++a+A+++    +++a+eea+a +  +y+q++e ++
  MMETSP1137-20121227|10431_1 24 LQAEhEAAEVVAKAKAEKVSKLKQAKEEADA-EXAAYKQQREGQF 67
                 44445**************************.5557777776655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (119 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       427  (0.104096); expected 82.0 (0.02)
Passed bias filter:                      175  (0.0426621); expected 82.0 (0.02)
Passed Vit filter:                        21  (0.00511945); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.18u 0.18s 00:00:00.36 Elapsed: 00:00:00.49
# Mc/sec: 320.54
//
Query:       MMETSP1137-20121227|10432_1  [L=34]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (34 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        35  (0.00853242); expected 82.0 (0.02)
Passed bias filter:                       32  (0.00780107); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.12s 00:00:00.22 Elapsed: 00:00:00.25
# Mc/sec: 179.51
//
Query:       MMETSP1137-20121227|10433_1  [L=695]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   1.2e-116  387.6   0.0   1.9e-115  383.7   0.0    2.5  1  TIGR00612 ispG_gcpE: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase


Domain annotation for each model (and alignments):
>> TIGR00612  ispG_gcpE: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  383.7   0.0  4.7e-119  1.9e-115       1     357 []      48     669 ..      48     669 .. 0.97

  Alignments for each domain:
  == domain 1    score: 383.7 bits;  conditional E-value: 4.7e-119
    TIGR00612   1 rrktrkvrvGnvkvGgdapikvqsmtntlttDidstveqikaLeeagcdivRvtvqdieeaealekikerlialklnvPlvaDihfalkkaallvadavdkvRinPGniidkrk...........s.......leekvadlvekakrlgkalRiGvnaGsLserllekygddtaealvqsaleyiavlekldfrdvvlslkasnvkelvaayrqlakrlD.....vpLhlGvteaGmgvkGiiksavgigtlLaegiGdtiRvsLteeptkeikva.....................................................................................................................................................................................................................................................................feiLqelGlRkvkvelvaCPsCgRtlfdleevvkrvrkrtqhlkgplkvavmGCivngpGeakdaDlGlvgsktgaialyvkgkkvkakiseedaaeelikliq 357
                  rrktr+v+ G++k G+++pi+ q+m              i + ++ g d+vR+tv ++++a+a++ ike l + + ++Pl aD+hf  +k al+vada +k+RinPGn+ d rk           +         e +++lvek+krl+ a+RiG n+GsLs r+l+ yg dt+ ++v+sa+e+++++   d++++v+s+kasn+ ++v+ayr+la +       +pLhlGvteaG+g++G++ksa+gig+lLa+g+GdtiRvsLte+p++e k +                                                                                                                                                                                                                                                                     f++Lq   +R++k+e+v+CPsCgRtlfdl+ev++++  rt hl+g +++a+mGCivngpGe++daD+G+vg+  g+++lyv    v++ i++e+a +eli+li+
  MMETSP1137-20121227|10433_1  48 RRKTRTVTAGKLKFGSEHPIVRQTME-------------IIKCADEGFDLVRLTVVGMKDAKACHGIKEGLLKKGYDIPLCADMHF-QPKVALEVADAFEKIRINPGNFADGRKtfeemvyetdeQyfaerdyFVEVFTPLVEKCKRLERAMRIGTNHGSLSARVLSFYG-DTPRGMVESAIEFADICRAEDYHNFVFSMKASNPLVMVQAYRLLAAEQYrlgwdYPLHLGVTEAGEGEDGRMKSAIGIGALLADGLGDTIRVSLTEDPEHEYKPCnrlaeiggmrmtpeaaeaqaavpaykdsrdifsfarragrlpeqkegdeldyrgllnrdgsvlsavtvemlrepqtlykqlgaktvvglpfkdistsdslllrtvpaeddavarqtlkrladvavhaivpaaalaetplpgavslytlpeakgaxisvrgdetkdelaalagishdfllldppaeisrlhasrrlfamlkeldidsavvhhfrpetypmtelalqmgaqiggllcdglgdgvlvepveptafaldsvrlasFGLLQGSRMRNTKTEFVSCPSCGRTLFDLQEVTAQISARTGHLPG-VSIAIMGCIVNGPGEMADADFGYVGGAPGKVDLYVV---VRRAIPNEQACDELIELIK 669
                  8***********************95.............6677889****************************************.8889999*****************9997877777666505556677899**********************************.********************************************9876444455*********************************************************************************************************************************************************************************************************************************************************************************************************************************************************************.**********************************96...6779************996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (695 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        78  (0.0190151); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.13s 00:00:00.60 Elapsed: 00:00:00.81
# Mc/sec: 1132.50
//
Query:       MMETSP1137-20121227|10435_1  [L=143]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (143 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       227  (0.0553389); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.13s 00:00:00.29 Elapsed: 00:00:00.35
# Mc/sec: 539.27
//
Query:       MMETSP1137-20121227|10436_1  [L=342]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (342 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       109  (0.0265724); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.15s 00:00:00.41 Elapsed: 00:00:00.35
# Mc/sec: 1289.72
//
Query:       MMETSP1137-20121227|10437_1  [L=304]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0013   14.3  22.0     0.0017   13.9  15.3    1.0  1  TIGR02169 SMC_prok_A: chromosome segregation protein SMC
     0.0099   11.4  29.1      0.012   11.2  20.2    1.1  1  TIGR02168 SMC_prok_B: chromosome segregation protein SMC
  ------ inclusion threshold ------
        0.9    6.2  34.0       0.14    8.9   8.9    2.1  2  TIGR01843 type_I_hlyD: type I secretion membrane fusion protein, HlyD family


Domain annotation for each model (and alignments):
>> TIGR02169  SMC_prok_A: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9  15.3   1.2e-06    0.0017     672     857 ..      71     257 ..      62     281 .. 0.84

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 1.2e-06
    TIGR02169 672 sekeklerlrerleeLereleslqselrriekrldelssklsdaekkieeiekeleqleeeee.klkerleeleeklseleeeleekkeelkeleaeieeleeklaklkealedleaelseekieeieeelekleeevsriearleeieaelnklelekelleeeiqelqeeieeleeqkkeiekei 857
                  s    + +l+ rl + e++l  ++++lr +  r  e  +++   ++++++++++ +++ ++   ++++r +++ ++l   + + +++++e+++l+a+++++ e+l ++++   +l ++l+ + +e+ +++  + +   ++  +   ++e  +++++ ++  l+ e q  q+++   e  +++ ++e 
  MMETSP1137-20121227|10437_1  71 STATLVSSLQSRLSKVEQQLRGVTEQLRXATAREAESAREAVSLRAELRQANADSQRVLRKCVlENQRREAASSAQLARAKGDNAAARDEVQRLRAQLKAKDEQLRAMQATSRELRRKLDAQTLEREQRRFLASHGLXEKEPHTPTHAETTVSREQRHRTRLRYETQRGQQQQPSQERAQRASQQEA 257
                  4555678899******************99999999999999999999999999998777655156666777889999*************************************************999999999999999999999999999998888888888887777665554444444333 PP

>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.2  20.2   8.5e-06     0.012     269     475 ..      76     253 ..      15     301 .. 0.36

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 8.5e-06
    TIGR02168 269 leelrlekseleeeleelqkelqelkaeisrleqeieilkerleqlekeleeleeq.leeleskkeeleeelaeleeeleelkeelesleaeleeaeaeleelesrleeleeeleelrsevaele.....eqlaslnaelerleaeleqleerrerlkqeieelekkleeaeaelkelqeeleeleeeleeleeelerleealeeleeeleea 475
                  ++ l+++ s++e++l+ ++++l  ++a+ ++  +e   l+++l+q++++++++ ++ + e+++++  ++++la+ + + + ++ e+++l+a+l+++ ++l++++++++el+++l+++  e  + +        ++   + + +e+++++ +++r+rl+                                    e +r ++++ ++e++ ++ 
  MMETSP1137-20121227|10437_1  76 VSSLQSRLSKVEQQLRGVTEQLRXATAREAESAREAVSLRAELRQANADSQRVLRKcVLENQRREAASSAQLARAKGDNAAARDEVQRLRAQLKAKDEQLRAMQATSRELRRKLDAQTLEREQRRflashGLXEKEPHTPTHAETTVSREQRHRTRLR-----------------------------------YETQRGQQQQPSQERAQRAS 253
                  22222222222222222222222222222222222222222222222222221111011112222222222222222222222222222222222222222222222222222211111111110000001111111111122222222222222222...................................11111111111111111111 PP

>> TIGR01843  type_I_hlyD: type I secretion membrane fusion protein, HlyD family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   8.9   0.00011      0.14     113     228 ..      41     164 ..       4     165 .. 0.70
   2 ?    2.1  17.9     0.012        16      96     239 ..     110     255 ..     104     282 .. 0.79

  Alignments for each domain:
  == domain 1    score: 8.9 bits;  conditional E-value: 0.00011
    TIGR01843 113 pdillsae.d..avaelvkeqeslfesrksalraql.esleaqikqleaeleglqaqlqalr.qqleliseelealrkL....kekglvsrlelLelereraelqgelaeleaeleklkaeldel 228
                  +  l++a+ d   +a+++  q++ +++r+s+  a+l  sl++++ + e++l+g+++ql+ ++ +++e + e +  + +L    ++++ v r  +Le +r +a+ +++la+++++ ++++ e+++l
  MMETSP1137-20121227|10437_1  41 S-GLTAARhDapTAAAVLLAQHAFLDARRSSSTATLvSSLQSRLSKVEQQLRGVTEQLRXATaREAESAREAVSLRAELrqanADSQRVLRKCVLENQRREAASSAQLARAKGDNAAARDEVQRL 164
                  3.34444445688889999999999999998888761567889999*********9998665134455555555555552222678889999************************999998876 PP

  == domain 2    score: 2.1 bits;  conditional E-value: 0.012
    TIGR01843  96 evarlraeanseeaiefpdillsae.d...avaelvkeqeslfesrksalraqlesleaqikqleaeleglqaqlqalrqqleliseelealrkLkekglvsrlelLelereraelqgelaeleaeleklkaeldeleeklqeleqkf 239
                  e+  lrae+++++a  +++ +l++      + +++   q +  +  ++a r+++++l aq+k + ++l+ +qa  ++lr++l++   e e +r L++ gl ++  +     e    +++  +++ + e ++ ++++  +++++  ++ 
  MMETSP1137-20121227|10437_1 110 EAVSLRAELRQANA--DSQRVLRKCvLenqRREAASSAQLARAKGDNAAARDEVQRLRAQLKAKDEQLRAMQATSRELRRKLDAQTLEREQRRFLASHGLXEKEPHTPTHAETTVSREQRHRTRLRYETQRGQQQQPSQERAQRASQQ 255
                  55556777666554..3444555443344455555666667778889999*****************************************************999999999988888888888888888888888888877765543 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (304 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       311  (0.0758167); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.37u 0.18s 00:00:00.55 Elapsed: 00:00:00.61
# Mc/sec: 657.78
//
Query:       MMETSP1137-20121227|10438_1  [L=238]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (238 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        65  (0.0158459); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.15s 00:00:00.38 Elapsed: 00:00:00.42
# Mc/sec: 747.94
//
Query:       MMETSP1137-20121227|10439_1  [L=523]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (523 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       147  (0.0358362); expected 82.0 (0.02)
Passed bias filter:                       98  (0.0238908); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.12s 00:00:00.46 Elapsed: 00:00:01.12
# Mc/sec: 616.34
//
Query:       MMETSP1137-20121227|10440_1  [L=484]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (484 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        70  (0.0170648); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.16s 00:00:00.54 Elapsed: 00:00:01.34
# Mc/sec: 476.74
//
Query:       MMETSP1137-20121227|10441_1  [L=159]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (159 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        99  (0.0241346); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.13s 00:00:00.31 Elapsed: 00:00:00.33
# Mc/sec: 635.95
//
Query:       MMETSP1137-20121227|10442_1  [L=161]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (161 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        78  (0.0190151); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.12s 00:00:00.29 Elapsed: 00:00:00.54
# Mc/sec: 393.52
//
Query:       MMETSP1137-20121227|10443_1  [L=296]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (296 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       114  (0.0277913); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.17s 00:00:00.42 Elapsed: 00:00:00.63
# Mc/sec: 620.14
//
Query:       MMETSP1137-20121227|10445_1  [L=485]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (485 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        87  (0.0212092); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.14s 00:00:00.47 Elapsed: 00:00:00.57
# Mc/sec: 1103.70
//
Query:       MMETSP1137-20121227|10446_1  [L=140]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (140 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        61  (0.0148708); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.15s 00:00:00.31 Elapsed: 00:00:00.25
# Mc/sec: 739.14
//
Query:       MMETSP1137-20121227|10447_1  [L=196]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (196 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       151  (0.0368113); expected 82.0 (0.02)
Passed bias filter:                      119  (0.0290102); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.15s 00:00:00.36 Elapsed: 00:00:00.57
# Mc/sec: 446.03
//
Query:       MMETSP1137-20121227|10448_1  [L=60]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        74  (0.01804); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:00.28
# Mc/sec: 282.83
//
Query:       MMETSP1137-20121227|10449_1  [L=87]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (87 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        32  (0.00780107); expected 82.0 (0.02)
Passed bias filter:                       29  (0.00706972); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.13s 00:00:00.27 Elapsed: 00:00:00.27
# Mc/sec: 425.30
//
Query:       MMETSP1137-20121227|10450_1  [L=235]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.023   11.4   0.0      0.032   11.0   0.0    1.1  1  TIGR01208 rmlA_long: glucose-1-phosphate thymidylyltransferase


Domain annotation for each model (and alignments):
>> TIGR01208  rmlA_long: glucose-1-phosphate thymidylyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   7.7e-06     0.032      72     111 ..      67     106 ..      56     125 .. 0.86

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 7.7e-06
    TIGR01208  72 vkityilqkeplGlahavlvardflgdedfvvylGdnlle 111
                  +++t+ + ++  G ah ++va d  + ++f+v  Gdn ++
  MMETSP1137-20121227|10450_1  67 INVTLTVFNKGPGKAHQIIVADDNWKSDKFIVVAGDNNFT 106
                  678888889999*************************775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (235 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       107  (0.0260848); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.22u 0.17s 00:00:00.39 Elapsed: 00:00:00.34
# Mc/sec: 912.28
//
Query:       MMETSP1137-20121227|10451_1  [L=145]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (145 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        65  (0.0158459); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.15s 00:00:00.30 Elapsed: 00:00:00.37
# Mc/sec: 517.25
//
Query:       MMETSP1137-20121227|10452_1  [L=172]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (172 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       155  (0.0377864); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.17s 00:00:00.38 Elapsed: 00:00:00.36
# Mc/sec: 630.61
//
Query:       MMETSP1137-20121227|10453_1  [L=183]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.8e-42  141.2  26.3    1.4e-39  132.5  14.3    2.1  2  TIGR01100 V_ATP_synt_C: V-type ATPase, C subunit
  ------ inclusion threshold ------
        1.2    7.1  20.2      0.075   11.0   4.8    2.8  2  TIGR01260 ATP_synt_c: ATP synthase F0, C subunit


Domain annotation for each model (and alignments):
>> TIGR01100  V_ATP_synt_C: V-type ATPase, C subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  132.5  14.3   6.6e-43   1.4e-39       2     108 .]      25     136 ..      24     136 .. 0.94
   2 !   12.2   0.2   1.7e-05     0.035      37      71 ..     143     177 ..     138     180 .. 0.85

  Alignments for each domain:
  == domain 1    score: 132.5 bits;  conditional E-value: 6.6e-43
    TIGR01100   2 fgvlGaaaalvfsalGaayGtaksgvGiaalgvlrpelilksiipvvmaGiiaiyGlvvavliagslkekek.....yslykgfihlgaGlavGlsglaaGlaiGivGdagv 108
                  +g++Gaa al+fs++G+ayGt k+++Gi+++gv +pe+++k+iipvvmaG+++iyGl++av+i +s+++ ++     ys y+gf+hl+aGl++G+sglaaG+aiGi+Gdagv
  MMETSP1137-20121227|10453_1  25 LGFMGAAGALIFSCVGSAYGTGKAAMGISSIGVAKPEIVMKNIIPVVMAGVLGIYGLIIAVIIGNSVQAISAagvvsYSSYSGFAHLSAGLTCGFSGLAAGIAIGIAGDAGV 136
                  69***************************************************************998764323345999******************************98 PP

  == domain 2    score: 12.2 bits;  conditional E-value: 1.7e-05
    TIGR01100  37 pelilksiipvvmaGiiaiyGlvvavliagslkek 71 
                  p++ +  ++ +++a  +++yGl++ +++a++++e+
  MMETSP1137-20121227|10453_1 143 PKVYVGMVLILIFAEALGLYGLIIGLIMASNVSES 177
                  666677788899*****************999875 PP

>> TIGR01260  ATP_synt_c: ATP synthase F0, C subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   3.7     0.044        90       5      55 ..      37      87 ..      33      88 .. 0.88
   2 ?   11.0   4.8   3.6e-05     0.075       2      55 ..     121     170 ..     120     172 .. 0.90

  Alignments for each domain:
  == domain 1    score: 1.1 bits;  conditional E-value: 0.044
    TIGR01260  5 aaiGigilggKflEsaARQPelagllrtkmfivaglvdaipiiavviaLll 55
                 + +G ++  gK+  ++     +++++  k +i + ++   +i+++ ia ++
  MMETSP1137-20121227|10453_1 37 SCVGSAYGTGKAAMGISSIGVAKPEIVMKNIIPVVMAGVLGIYGLIIAVII 87
                 5688889999999999999999999**********************9985 PP

  == domain 2    score: 11.0 bits;  conditional E-value: 3.6e-05
    TIGR01260   2 aiGaaiGigilggKflEsaARQPelagllrtkmfivaglvdaipiiavviaLll 55 
                  ++ a+i igi+g   + ++  QP     + + m+++   ++a +++++ i+L++
  MMETSP1137-20121227|10453_1 121 GLAAGIAIGIAGDAGVRAVSQQPK----VYVGMVLILIFAEALGLYGLIIGLIM 170
                  577899999999999999999996....5789*********************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (183 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       201  (0.0490005); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.18u 0.18s 00:00:00.36 Elapsed: 00:00:00.30
# Mc/sec: 805.13
//
Query:       MMETSP1137-20121227|10454_1  [L=879]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (879 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       122  (0.0297416); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.49u 0.22s 00:00:00.71 Elapsed: 00:00:00.43
# Mc/sec: 2698.10
//
Query:       MMETSP1137-20121227|10455_1  [L=192]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.5e-06   25.1   0.4    0.00057   17.5   0.1    2.2  2  TIGR02552 LcrH_SycD: type III secretion low calcium response chaperone LcrH/SycD
    3.5e-06   24.6   0.1    5.8e-05   20.6   0.0    2.0  2  TIGR02521 type_IV_pilW: type IV pilus biogenesis/stability protein PilW
    4.7e-06   22.6   0.3    5.2e-06   22.4   0.2    1.1  1  TIGR02917 PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein
  ------ inclusion threshold ------
      0.015   11.8   0.1       0.48    6.8   0.0    1.9  2  TIGR00990 3a0801s09: mitochondrial precursor proteins import receptor


Domain annotation for each model (and alignments):
>> TIGR02552  LcrH_SycD: type III secretion low calcium response chaperone LcrH/SycD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.1   5.6e-07   0.00057      55     108 ..      52     105 ..      43     115 .. 0.90
   2 !    6.5   0.1    0.0013       1.4      81     123 ..     112     153 ..     101     165 .. 0.67

  Alignments for each domain:
  == domain 1    score: 17.5 bits;  conditional E-value: 5.6e-07
    TIGR02552  55 wlgLaaclqalkeyeeAiaaYalaaaldlddprpvyhaaecllalgekeeAlka 108
                  ++ L+ cl + + + eA+ +++ a++  +d+ +++ ++a++ll+lg   +A  a
  MMETSP1137-20121227|10455_1  52 AMELGGCLAQSGYWREALRQFDKATQYAPDSSSAHEQRAQVLLELGSVFDAVLA 105
                  688*******************************************99888665 PP

  == domain 2    score: 6.5 bits;  conditional E-value: 0.0013
    TIGR02552  81 ldlddprpvyhaaecllalgekeeAlkaLklaieiaeekeeys 123
                   +++  ++++ +a c l+ ge + +l+ ++ a+ ++  ++  +
  MMETSP1137-20121227|10455_1 112 YSPEWGDAHLTLARCQLNYGELQLSLESFDKALSLSCTED-IA 153
                  4555556777888888888888888888888877765544.44 PP

>> TIGR02521  type_IV_pilW: type IV pilus biogenesis/stability protein PilW
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   0.0   5.6e-08   5.8e-05      20     101 ..      38     119 ..      27     120 .. 0.89
   2 !    5.6   0.0    0.0021       2.2      49      95 ..     101     147 ..      94     153 .. 0.85

  Alignments for each domain:
  == domain 1    score: 20.6 bits;  conditional E-value: 5.6e-08
    TIGR02521  20 esskkkdrekaakirvqLaleYleqgdlekAkenlekAleldpkdadanlalAlyyqqlgelekAeesfrkAltlkpnngdv 101
                  +++++ ++ +aa+  ++L+    ++g  ++A ++ +kA +++p++++a+  +A ++ +lg    A  + ++A   +p+ gd+
  MMETSP1137-20121227|10455_1  38 AAADDFGHGEAARKAMELGGCLAQSGYWREALRQFDKATQYAPDSSSAHEQRAQVLLELGSVFDAVLAAERACLYSPEWGDA 119
                  56788899999************************************************99999998888888888887776 PP

  == domain 2    score: 5.6 bits;  conditional E-value: 0.0021
    TIGR02521  49 kAkenlekAleldpkdadanlalAlyyqqlgelekAeesfrkAltlk 95 
                   A  + e A  + p+  da+l lA    + gel+   esf kAl+l+
  MMETSP1137-20121227|10455_1 101 DAVLAAERACLYSPEWGDAHLTLARCQLNYGELQLSLESFDKALSLS 147
                  56677888999999999**************************9986 PP

>> TIGR02917  PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.4   0.2     5e-09   5.2e-06     132     222 ..      56     146 ..      25     171 .. 0.68

  Alignments for each domain:
  == domain 1    score: 22.4 bits;  conditional E-value: 5e-09
    TIGR02917 132 glAaLglgeleeAqksleqAlaiapksleaklglAqlalaenkldearalvdevLtadpknvdAllLkgdlllssgnieeAlaayrkaiel 222
                  g   +++g   eA +++ +A + ap+s++a  + Aq++l+ + + +a  +++++   +p+  dA+l ++  +l  g+ ++ l++++ka+ l
  MMETSP1137-20121227|10455_1  56 GGCLAQSGYWREALRQFDKATQYAPDSSSAHEQRAQVLLELGSVFDAVLAAERACLYSPEWGDAHLTLARCQLNYGELQLSLESFDKALSL 146
                  4444555556666666666666666666666666666666666666666666666666666666666666666666666666666666665 PP

>> TIGR00990  3a0801s09: mitochondrial precursor proteins import receptor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   0.0   0.00089      0.91     524     568 ..      65     109 ..      51     111 .. 0.89
   2 ?    6.8   0.0   0.00047      0.48     531     576 ..     106     151 ..      99     172 .. 0.85

  Alignments for each domain:
  == domain 1    score: 5.9 bits;  conditional E-value: 0.00089
    TIGR00990 524 fieaekllekalildPesdiavitlaqlllqqekvdealklfera 568
                  + ea +  +ka++  P+s  a    aq+ll  + v +a+   era
  MMETSP1137-20121227|10455_1  65 WREALRQFDKATQYAPDSSSAHEQRAQVLLELGSVFDAVLAAERA 109
                  578999999**************************9999988887 PP

  == domain 2    score: 6.8 bits;  conditional E-value: 0.00047
    TIGR00990 531 lekalildPesdiavitlaqlllqqekvdealklferaaelartee 576
                   e+a    Pe   a  tla+ +l  ++++ +l+ f++a  l+ te+
  MMETSP1137-20121227|10455_1 106 AERACLYSPEWGDAHLTLARCQLNYGELQLSLESFDKALSLSCTED 151
                  6999999**********************************99986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (192 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        88  (0.0214529); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.25u 0.17s 00:00:00.42 Elapsed: 00:00:00.30
# Mc/sec: 844.73
//
Query:       MMETSP1137-20121227|10457_1  [L=743]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.011   13.7   0.0      0.034   12.1   0.0    1.8  1  TIGR02802 Pal_lipo: peptidoglycan-associ
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